18627 40 0 1 chr3 0 2422 -227522156 - L1P LINE L1 -1647 4499 2079 1723 94 0 0 chr3 2421 2665 -227521913 + L1P LINE L1 729 972 -5174 * 532 246 43 21 chr3 3767 3954 -227520624 - L1MC4a LINE L1 -1873 5935 5745 265 286 76 34 chr3 3990 4109 -227520469 - MIR SINE MIR -71 191 68 1332 175 21 79 chr3 4269 4560 -227520018 + AluJb SINE Alu 21 294 -18 17859 130 17 12 chr3 5041 8095 -227516483 - L1P LINE L1 -3067 3079 11 371 234 30 72 chr3 8116 8283 -227516295 - L1 LINE L1 -3763 2383 2224 692 217 136 77 chr3 8821 9023 -227515555 - MIR SINE MIR -12 250 31 1700 213 7 3 chr3 9023 9333 -227515245 - AluJb SINE Alu -1 311 1 692 217 136 77 chr3 9333 9365 -227515213 - MIR SINE MIR -231 31 2 202 234 172 0 chr3 9711 9775 -227514803 - MIR SINE MIR -30 232 158 260 343 19 28 chr3 10716 10824 -227513754 - MIR SINE MIR -76 132 26 2576 108 44 33 chr3 11347 11828 -227512750 + LTR21A LTR ERV1 1 486 -19 207 323 15 0 chr3 12130 12195 -227512383 + MIR3 SINE MIR 134 199 -9 468 265 81 27 chr3 12749 12934 -227511644 - MIR SINE MIR -28 234 40 237 326 93 29 chr3 12940 13284 -227511294 + L1MC4a LINE L1 4804 5169 -977 1576 162 3 73 chr3 13374 13689 -227510889 + AluJb SINE Alu 1 293 -19 1381 243 107 28 chr3 13710 14291 -227510287 + L1MC4a LINE L1 5298 5924 -1884 2450 203 15 48 chr3 14718 15369 -227509209 - LTR27 LTR ERV1 0 636 7 358 175 98 63 chr3 15593 15736 -227508842 - LTR23-int LTR ERV1 -337 4786 4639 7916 75 3 1 chr3 15751 16878 -227507700 - L1P LINE L1 -4055 2091 962 691 315 40 11 chr3 17078 17653 -227506925 - L1 LINE L1 -1076 5070 4474 1884 181 3 3 chr3 17653 17957 -227506621 - AluJb SINE Alu -8 304 1 691 315 40 11 chr3 17957 17968 -227506610 - L1 LINE L1 -1672 4474 4465 40012 53 7 3 chr3 18000 24048 -227500530 + L1PA3 LINE L1 9 6083 -72 5811 50 0 0 chr3 24148 24869 -227499709 + L1PA3 LINE L1 5435 6155 0 207 0 0 0 chr3 24873 24896 -227499682 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 4121 235 27 12 chr3 24897 26599 -227497979 - L1PA13 LINE L1 -3771 3026 1285 845 224 49 20 chr3 26713 26959 -227497619 - L1MB7 LINE L1 -105 7498 7246 426 188 60 0 chr3 26956 27073 -227497505 - L1MB7 LINE L1 -914 6651 6528 * 1115 218 74 4 chr3 27173 27402 -227497176 + AluJb SINE Alu 1 245 -67 6983 188 43 19 chr3 27413 30113 -227494465 - L1MB7 LINE L1 -2083 5482 2715 988 53 30 0 chr3 30134 30266 -227494312 - L1PA4 LINE L1 -3 6152 6017 2431 147 70 3 chr3 30266 30850 -227493728 - THE1C-int LTR MaLR -960 691 1 2404 143 8 0 chr3 30850 31222 -227493356 - THE1C LTR MaLR 0 375 1 556 83 21 10 chr3 31275 31371 -227493207 + (TCTA)n Simple_repeat Simple_repeat 3 99 0 24 67 0 0 chr3 31384 31429 -227493149 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr3 31556 31591 -227492987 + AT_rich Low_complexity Low_complexity 1 35 0 1341 147 0 0 chr3 31869 32101 -227492477 + L1PA11 LINE L1 2408 2639 -3507 13937 178 18 3 chr3 32202 35788 -227488790 + L1PA11 LINE L1 2596 6168 -6 2023 128 39 62 chr3 35789 36011 -227488567 + L1M1 LINE L1 3067 3293 -4272 6793 74 0 6 chr3 36011 37413 -227487165 - L1PA5 LINE L1 -3 6151 4752 2023 128 39 62 chr3 37413 37704 -227486874 + L1M1 LINE L1 3293 3568 -3997 39876 61 1 0 chr3 37704 43716 -227480862 + L1PA4 LINE L1 1 6019 -136 1518 56 0 0 chr3 43816 44014 -227480564 + L1P LINE L1 3456 3653 -2493 439 91 15 0 chr3 44013 44079 -227480499 - L1M1 LINE L1 -576 5726 5660 * 6172 148 15 6 chr3 44076 45305 -227479273 + L1MA1 LINE L1 5063 6302 0 1942 127 95 24 chr3 45317 45382 -227479196 + L1PA15 LINE L1 5769 5828 -337 2351 141 11 13 chr3 45382 45758 -227478820 + THE1C LTR MaLR 1 375 0 1942 127 95 24 chr3 45758 46062 -227478516 + L1PA15 LINE L1 5828 6164 -1 384 228 10 0 chr3 46066 46167 -227478411 + L1MB7 LINE L1 6065 6166 -18 1004 192 50 50 chr3 46187 46489 -227478089 + L1MB7 LINE L1 5883 6184 0 515 188 26 0 chr3 46489 46606 -227477972 - L1 LINE L1 -2749 3397 3278 * 586 203 15 0 chr3 46604 46737 -227477841 + L1 LINE L1 3415 3549 -2597 24962 52 2 2 chr3 46837 51865 -227472713 - L1P LINE L1 -988 5158 1 10171 229 27 13 chr3 51862 54947 -227469631 + L1P4 LINE L1 2358 5483 -682 * 12686 61 63 0 chr3 54949 57297 -227467281 + L1PA5 LINE L1 3752 6153 -1 1666 185 40 10 chr3 57635 57814 -227466764 - AluJo SINE Alu -5 307 114 186 43 0 0 chr3 57814 57837 -227466741 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1666 185 40 10 chr3 57837 57954 -227466624 - AluJo SINE Alu -198 114 2 330 215 15 0 chr3 58486 58551 -227466027 - MER5A DNA MER1_type -123 66 1 2439 47 40 3 chr3 59122 59421 -227465157 - AluY SINE Alu -1 310 1 2308 120 10 0 chr3 59822 60131 -227464447 - AluSx SINE Alu 0 312 1 441 219 80 29 chr3 60799 60936 -227463642 + MIR3 SINE MIR 54 197 -11 394 208 157 38 chr3 60936 61095 -227463483 + MER5B DNA MER1_type 1 178 0 2281 179 30 49 chr3 61169 61677 -227462901 - MLT1D LTR MaLR -7 498 1 501 201 63 13 chr3 61947 62106 -227462472 + MER53 DNA DNA 1 167 -22 216 223 43 129 chr3 62284 62423 -227462155 - MIR SINE MIR -50 212 86 267 284 181 17 chr3 62982 63098 -227461480 - MIR3 SINE MIR -60 148 14 1968 142 10 3 chr3 63264 63560 -227461018 - AluSq SINE Alu -15 298 1 1795 185 116 44 chr3 64084 64517 -227460061 - MER31B LTR ERV1 0 466 3 692 288 27 51 chr3 64839 64942 -227459636 - MIR SINE MIR 0 262 158 2324 179 63 32 chr3 64942 65434 -227459144 - LTR22 LTR ERVK -2 507 1 692 288 27 51 chr3 65434 65587 -227458991 - MIR SINE MIR -104 158 12 376 290 36 29 chr3 65572 65710 -227458868 - MIR3 SINE MIR -43 165 27 * 489 310 17 29 chr3 65767 65941 -227458637 + MIR SINE MIR 41 212 -50 183 365 149 0 chr3 67028 67135 -227457443 - MIR SINE MIR -66 142 20 204 324 0 14 chr3 67616 67687 -227456891 - MIR3 SINE MIR -24 184 115 414 271 113 26 chr3 68021 68172 -227456406 - MIR3 SINE MIR -11 197 34 250 271 146 10 chr3 68189 68285 -227456293 - MIR SINE MIR -55 153 45 1708 196 0 20 chr3 68308 68609 -227455969 - AluJb SINE Alu -17 295 1 445 276 178 6 chr3 68610 68773 -227455805 - MIR SINE MIR -64 198 8 349 203 212 25 chr3 68894 69012 -227455566 - L1ME4a LINE L1 -14 6107 5968 539 222 9 0 chr3 69532 69640 -227454938 + MER81 DNA DNA 1 109 -5 7315 44 33 1 chr3 69671 71342 -227453236 + L1PA4 LINE L1 4458 6154 -1 328 279 103 22 chr3 71375 71511 -227453067 - MIR SINE MIR -113 149 3 537 320 90 21 chr3 71773 72107 -227452471 + L2 LINE L2 1229 1585 -1729 328 287 0 23 chr3 72096 72183 -227452395 + L2 LINE L2 3229 3313 0 * 188 319 21 0 chr3 72194 72241 -227452337 + MIR SINE MIR 93 140 -68 22 0 0 0 chr3 72599 72621 -227451957 + AT_rich Low_complexity Low_complexity 1 22 0 439 326 74 107 chr3 72921 73286 -227451292 + L2 LINE L2 2918 3270 -2 643 269 90 12 chr3 73291 73547 -227451031 + L2 LINE L2 2999 3274 -39 182 275 0 0 chr3 73623 73663 -227450915 + MIR SINE MIR 159 198 -64 1193 136 14 0 chr3 73742 73962 -227450616 - L1MA6 LINE L1 -1 6299 6077 2932 48 19 3 chr3 74025 74401 -227450177 - L1PA6 LINE L1 -3 6151 5770 33751 108 6 9 chr3 74407 80571 -227444007 - L1PA6 LINE L1 0 6154 17 23 33 0 0 chr3 81097 81127 -227443451 + AT_rich Low_complexity Low_complexity 1 30 0 611 223 19 38 chr3 82445 82656 -227441922 + L1MA9 LINE L1 6068 6274 -38 2306 107 3 0 chr3 82685 82985 -227441593 + AluSp SINE Alu 3 303 -10 3083 47 0 0 chr3 83179 83561 -227441017 - L1PA4 LINE L1 -3 6152 5771 2291 39 0 0 chr3 83561 83845 -227440733 + L1P2 LINE L1 5439 5722 -433 559 140 11 0 chr3 84123 84216 -227440362 - L1PB4 LINE L1 -1 6155 6062 10443 176 29 35 chr3 86376 86581 -227437997 - L1M2 LINE L1 -743 5585 5380 1967 144 3 0 chr3 86581 86866 -227437712 - AluSx SINE Alu -26 286 1 10443 176 29 35 chr3 86866 87928 -227436650 - L1M2 LINE L1 -948 5380 4313 2359 92 0 0 chr3 87928 88232 -227436346 + AluY SINE Alu 1 304 -7 10443 176 29 35 chr3 88232 89538 -227435040 - L1M2 LINE L1 -2015 4313 3091 13044 32 0 15 chr3 89538 91918 -227432660 - L1PA3 LINE L1 0 6155 3798 5124 52 1 0 chr3 91918 92614 -227431964 + L1PA3 LINE L1 3104 3800 -2346 2480 182 24 42 chr3 92611 93232 -227431346 - L1M2 LINE L1 -3227 3101 2492 * 965 147 86 6 chr3 93233 93396 -227431182 - AluSp SINE Alu 0 313 138 3784 228 36 28 chr3 93397 94838 -227429740 - L1M2 LINE L1 -3819 2509 1054 808 213 0 37 chr3 94838 95002 -227429576 + FRAM SINE Alu 1 150 -26 408 111 0 49 chr3 95011 95092 -227429486 - L1M2 LINE L1 -4276 1052 976 501 280 0 8 chr3 95093 95225 -227429353 - L1M2 LINE L1 -5020 308 178 1692 203 41 19 chr3 95471 95994 -227428584 + L1M2c LINE L1 2234 2762 -4734 1519 272 79 31 chr3 97770 98946 -227425632 + L1M2c LINE L1 2558 3658 -3907 780 223 18 6 chr3 98951 99117 -227425461 - L1PA16 LINE L1 -6 6160 5993 2779 113 57 7 chr3 99124 99501 -227425077 + MLT2A1 LTR ERVL 1 403 -41 396 0 0 0 chr3 99501 99545 -227425033 + (TG)n Simple_repeat Simple_repeat 2 45 0 2779 113 57 7 chr3 99545 99590 -227424988 + MLT2A1 LTR ERVL 403 444 0 38215 90 15 9 chr3 99590 104664 -227419914 + HERVL-A1 LTR ERVL 1 5104 -550 2377 107 28 0 chr3 104663 105017 -227419561 + HERVL-A1 LTR ERVL 5291 5654 0 * 1637 118 35 8 chr3 105017 105272 -227419306 + MLT2A1 LTR ERVL 1 262 -182 249 214 71 0 chr3 105278 105362 -227419216 + L1MC4 LINE L1 6614 6703 -1339 231 195 26 13 chr3 105365 105442 -227419136 + (TA)n Simple_repeat Simple_repeat 1 78 0 366 75 0 19 chr3 105453 105506 -227419072 + MLT2A2 LTR ERVL 402 453 0 959 186 0 0 chr3 105516 105683 -227418895 - L1PA16 LINE L1 -188 5978 5812 325 91 18 0 chr3 105701 105756 -227418822 - L1MA2 LINE L1 -3 6301 6246 * 14294 54 5 0 chr3 105750 108233 -227416345 - L1PA3 LINE L1 -1 6154 3660 1892 47 9 0 chr3 108238 108470 -227416108 + L1PA3 LINE L1 3452 3685 -2461 * 5154 231 20 10 chr3 108467 110292 -227414286 - L1M1 LINE L1 -5036 2529 9 * 8845 248 70 27 chr3 110268 111648 -227412930 - L1PB4 LINE L1 -307 7268 5948 2178 136 60 26 chr3 111648 112000 -227412578 - THE1B LTR MaLR 0 364 1 8845 248 70 27 chr3 112000 114232 -227410346 - L1PB4 LINE L1 -1627 5948 3153 731 175 7 73 chr3 114232 114369 -227410209 - FLAM_C SINE Alu -5 128 1 8845 248 70 27 chr3 114369 115510 -227409068 - L1PB4 LINE L1 -4422 3153 2062 280 289 89 0 chr3 115502 115592 -227408986 - L1PB4 LINE L1 -5280 1569 1472 * 294 367 8 8 chr3 116311 116439 -227408139 - L1PB4 LINE L1 -5271 1568 1441 284 369 64 37 chr3 116643 116971 -227407607 - L1PB4 LINE L1 -6355 495 159 3901 225 41 19 chr3 116987 118813 -227405765 + L1MA9 LINE L1 4244 6111 -201 3104 235 35 25 chr3 118835 118858 -227405720 + L1 LINE L1 4360 4381 -1765 1820 164 144 31 chr3 118858 119241 -227405337 + MSTA LTR MaLR 3 428 0 9309 168 10 31 chr3 119245 120855 -227403723 + MSTA-int LTR MaLR 3 1578 -2 2168 153 140 11 chr3 120857 121236 -227403342 + MSTA LTR MaLR 1 428 0 3104 235 35 25 chr3 121236 122086 -227402492 + L1 LINE L1 4383 5250 -896 10756 25 1 0 chr3 122086 124052 -227400526 + L1PA4 LINE L1 4179 6154 -1 14980 105 6 16 chr3 124056 126276 -227398302 + HERVH LTR ERV1 1796 3993 -3720 2580 104 11 20 chr3 126259 126664 -227397914 + HERVH LTR ERV1 3994 5273 -1818 * 28073 54 1 2 chr3 126662 130127 -227394451 + HERVH LTR ERV1 4252 7713 0 2790 67 2 15 chr3 130128 130626 -227393952 + LTR7 LTR ERV1 2 448 -2 4165 122 8 0 chr3 130628 131257 -227393321 - L1P3 LINE L1 -2302 4159 3526 192 77 0 0 chr3 131300 131326 -227393252 + (T)n Simple_repeat Simple_repeat 1 26 0 6799 26 1 1 chr3 131329 132109 -227392469 - L1PA3 LINE L1 -3 6152 5373 * 15866 136 41 22 chr3 132103 135564 -227389014 - L1P3 LINE L1 -2919 3542 5 591 200 20 33 chr3 135574 135724 -227388854 + L1MA9 LINE L1 5798 5945 -367 446 329 38 29 chr3 135732 136045 -227388533 + L1PA12 LINE L1 7 322 -7259 975 124 103 0 chr3 137115 137260 -227387318 + THE1B LTR MaLR 1 160 -204 5036 238 25 28 chr3 137802 138244 -227386334 + L1PA12 LINE L1 2319 2761 -4823 2053 89 119 0 chr3 138244 138513 -227386065 + AluY SINE Alu 1 301 0 5036 238 25 28 chr3 138513 139035 -227385543 + L1PA12 LINE L1 2761 3283 -4301 1286 46 0 0 chr3 139035 139187 -227385391 - L1PA4 LINE L1 -3 6152 6001 5036 238 25 28 chr3 139187 140161 -227384417 + L1PA12 LINE L1 3283 4269 -3315 * 7750 48 23 0 chr3 140156 141138 -227383440 - L1PA3 LINE L1 -2223 3923 2919 12543 36 1 0 chr3 141138 143328 -227381250 + L1PA3 LINE L1 3953 6147 -8 25386 46 2 0 chr3 143428 147245 -227377333 + L1PA3 LINE L1 2344 6152 -3 21 36 0 0 chr3 147245 147273 -227377305 + AT_rich Low_complexity Low_complexity 1 28 0 1224 188 25 4 chr3 147608 147847 -227376731 + AluJb SINE Alu 38 281 -31 724 235 92 86 chr3 147878 147973 -227376605 - L1MEc LINE L1 -2098 4031 3938 1666 183 27 10 chr3 147973 148274 -227376304 - AluJb SINE Alu -6 306 1 724 235 92 86 chr3 148274 148592 -227375986 - L1MEc LINE L1 -2191 3938 3612 1728 166 3 26 chr3 148592 148894 -227375684 + AluJb SINE Alu 1 295 -17 724 235 92 86 chr3 148894 148934 -227375644 - L1MEc LINE L1 -2517 3612 3574 962 178 5 64 chr3 149215 149391 -227375187 - AluJb SINE Alu -13 299 135 2263 106 0 10 chr3 149391 149703 -227374875 - AluSx SINE Alu -3 309 1 962 178 5 64 chr3 149703 149728 -227374850 - AluJb SINE Alu -177 135 110 459 0 0 0 chr3 149841 149892 -227374686 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 1785 167 3 3 chr3 149894 150182 -227374396 - AluJb SINE Alu -16 296 9 532 276 97 15 chr3 150287 150627 -227373951 - L1MEc LINE L1 -3669 2460 2093 7516 36 0 0 chr3 150685 151618 -227372960 - L1PA3 LINE L1 -3 6152 5219 843 19 0 0 chr3 151619 151726 -227372852 + L1PA3 LINE L1 5122 5228 -918 207 0 0 0 chr3 151788 151811 -227372767 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4996 40 5 2 chr3 151882 152517 -227372061 + L1PA3 LINE L1 5538 6174 0 443 273 51 68 chr3 152738 153090 -227371488 - L1MEc LINE L1 -4640 1670 1325 327 260 71 8 chr3 153186 153313 -227371265 - L1MEc LINE L1 -4969 1150 1016 210 71 0 0 chr3 153398 153426 -227371152 + (TA)n Simple_repeat Simple_repeat 1 28 0 468 366 6 6 chr3 154439 154622 -227369956 - MIR SINE MIR 0 262 80 187 284 74 49 chr3 154853 154934 -227369644 + L2 LINE L2 3023 3105 -167 460 301 136 25 chr3 155632 155868 -227368710 - MIR SINE MIR 0 262 1 362 319 145 46 chr3 156287 156591 -227367987 - L2 LINE L2 -781 2533 2200 365 330 100 77 chr3 156640 157603 -227366975 - L2 LINE L2 -14 3258 2280 523 258 48 27 chr3 157747 157933 -227366645 + MLT2D LTR ERVL 79 268 -146 1346 214 4 4 chr3 158045 158320 -227366258 - MLT1A1 LTR MaLR -90 275 1 2075 183 49 43 chr3 158320 158850 -227365728 + L1MB8 LINE L1 5302 5834 -344 416 215 58 5 chr3 158853 158896 -227365682 - L1M4 LINE L1 -2848 3298 3259 308 24 24 0 chr3 158896 158937 -227365641 + (TC)n Simple_repeat Simple_repeat 1 42 0 213 39 0 0 chr3 158936 158962 -227365616 + (CA)n Simple_repeat Simple_repeat 1 26 0 * 416 215 58 5 chr3 158937 159128 -227365450 - L1M4 LINE L1 -2887 3259 3028 * 2218 282 36 50 chr3 159122 159781 -227364797 - L1PB1 LINE L1 0 6151 5502 1074 217 55 3 chr3 159780 160089 -227364489 - L1M4 LINE L1 -1925 4221 3897 * 1226 261 96 0 chr3 160089 160442 -227364136 - L2 LINE L2 -782 2532 2146 227 222 0 0 chr3 161749 161794 -227362784 + (TTA)n Simple_repeat Simple_repeat 1 45 0 527 211 0 0 chr3 162518 162613 -227361965 + FLAM_C SINE Alu 35 129 -14 10219 175 6 20 chr3 162773 165636 -227358942 - L1PA13 LINE L1 -9 6154 3321 2902 39 0 11 chr3 165811 166173 -227358405 - L1PA4 LINE L1 -2 6153 5796 3181 168 16 4 chr3 166174 166738 -227357840 + L1PA4 LINE L1 5209 5774 -381 190 273 11 91 chr3 166837 166925 -227357653 + MER5A DNA MER1_type 51 131 -58 225 132 0 0 chr3 168102 168140 -227356438 + (T)n Simple_repeat Simple_repeat 1 38 0 930 275 108 41 chr3 168394 168607 -227355971 - MLT1J LTR MaLR -18 493 296 2021 129 46 38 chr3 168607 168979 -227355599 - THE1C LTR MaLR 0 375 1 930 275 108 41 chr3 168979 169227 -227355351 - MLT1J LTR MaLR -215 296 1 629 215 56 93 chr3 169226 169440 -227355138 - MER102a DNA MER1_type -1 329 124 * 330 211 180 70 chr3 169618 169746 -227354832 + MER5A DNA MER1_type 48 189 0 700 164 32 4 chr3 169749 169938 -227354640 - MER58B DNA MER1_type -1 340 73 19126 35 0 1 chr3 169938 172397 -227352181 - L1PA2 LINE L1 -2109 4037 1580 11567 27 0 0 chr3 172397 174531 -227350047 + L1PA2 LINE L1 4022 6155 0 301 247 13 13 chr3 174534 174611 -227349967 - MER58B DNA MER1_type -260 81 5 809 233 35 0 chr3 175301 175473 -227349105 - MER5B DNA MER1_type 0 178 1 457 282 0 0 chr3 175528 175631 -227348947 - MER5A DNA MER1_type -83 106 4 183 172 0 0 chr3 175641 175670 -227348908 - MER5A DNA MER1_type -75 114 86 7847 108 3 1 chr3 175810 176971 -227347607 - L1P LINE L1 -4976 1170 7 * 10617 34 1 9 chr3 176970 178343 -227346235 + L1P LINE L1 3891 5253 -893 1855 52 0 0 chr3 178343 178571 -227346007 + L1PA3 LINE L1 5926 6155 0 670 168 87 0 chr3 178589 178762 -227345816 - LTR49-int LTR ERV1 -684 5647 5460 1345 117 75 4 chr3 178763 179003 -227345575 - LTR56 LTR ERV1 -188 257 1 213 172 17 69 chr3 179075 179133 -227345445 + MIR SINE MIR 16 70 -138 486 280 98 13 chr3 179218 179427 -227345151 - MIR SINE MIR -1 261 36 6774 88 44 0 chr3 180043 181808 -227342770 + L1PA7 LINE L1 4349 6151 -3 289 243 14 0 chr3 182354 182428 -227342150 + MER116 DNA Mariner 6 80 0 399 294 80 25 chr3 182762 182925 -227341653 - L2 LINE L2 -191 3081 2910 1122 121 0 0 chr3 183046 183195 -227341383 - AluSq SINE Alu -106 207 59 449 291 171 9 chr3 183435 183645 -227340933 + MIR SINE MIR 7 250 -12 1089 262 54 87 chr3 183736 183818 -227340760 + L2 LINE L2 2464 2547 -767 9061 52 3 0 chr3 183818 185732 -227338846 - L1PA4 LINE L1 0 6155 4239 1089 262 54 87 chr3 185732 186111 -227338467 + L2 LINE L2 2547 2910 -404 379 192 0 39 chr3 186246 186324 -227338254 + L2 LINE L2 3207 3281 -32 2445 62 3 0 chr3 186634 186926 -227337652 + AluY SINE Alu 1 293 -18 252 233 50 67 chr3 187060 187244 -227337334 - L1ME LINE L1 -644 5518 5341 1590 298 44 47 chr3 187278 188445 -227336133 - L1ME LINE L1 -813 5333 4168 396 0 0 0 chr3 188445 188489 -227336089 + (TG)n Simple_repeat Simple_repeat 2 45 0 1590 298 44 47 chr3 188489 188677 -227335901 - L1ME LINE L1 -1978 4168 3981 1544 226 3 7 chr3 188679 188988 -227335590 + AluJo SINE Alu 1 308 -4 596 219 77 146 chr3 189014 189237 -227335341 + MLT1J LTR MaLR 1 171 -340 1967 184 56 10 chr3 189237 189650 -227334928 - MSTB1 LTR MaLR 0 432 1 596 219 77 146 chr3 189650 189934 -227334644 + MLT1J LTR MaLR 171 473 -38 1911 228 32 24 chr3 189962 190413 -227334165 - L1ME1 LINE L1 -5 6161 5701 2274 95 0 0 chr3 190413 190744 -227333834 + AluSx SINE Alu 1 331 0 1911 228 32 24 chr3 190744 190880 -227333698 - L1ME1 LINE L1 -465 5701 5568 1516 176 21 52 chr3 190997 191313 -227333265 + AluJb SINE Alu 1 307 0 327 177 203 0 chr3 192926 193005 -227331573 - L1ME1 LINE L1 -577 5589 5495 800 194 36 12 chr3 193023 193188 -227331390 - AluJb SINE Alu -7 305 137 615 203 16 13 chr3 193191 193389 -227331189 - L1ME1 LINE L1 -730 5436 5242 1208 167 83 78 chr3 193528 193900 -227330678 - MLT1B LTR MaLR -16 374 1 502 208 17 0 chr3 193914 194034 -227330544 - L1ME1 LINE L1 -1098 5048 4927 2727 139 14 59 chr3 194071 194360 -227330218 - L1PA15 LINE L1 -3 6162 5862 1444 170 111 45 chr3 194360 194648 -227329930 - AluSx SINE Alu -2 310 4 2727 139 14 59 chr3 194648 194937 -227329641 - L1PA15 LINE L1 -303 5862 5495 2047 134 0 10 chr3 194937 195235 -227329343 - AluSx SINE Alu -17 295 1 2727 139 14 59 chr3 195235 195389 -227329189 - L1PA15 LINE L1 -670 5495 5336 1555 282 27 29 chr3 195398 195620 -227328958 - L1ME1 LINE L1 -2342 3804 3583 1457 211 16 26 chr3 195620 195928 -227328650 - AluJb SINE Alu -3 309 5 1555 282 27 29 chr3 195928 196023 -227328555 - L1ME1 LINE L1 -2563 3583 3489 730 218 0 0 chr3 196023 196147 -227328431 - FLAM_C SINE Alu -6 127 4 1555 282 27 29 chr3 196147 196561 -227328017 - L1ME1 LINE L1 -2657 3489 3073 6266 101 3 14 chr3 196555 197887 -227326691 - L1PA8 LINE L1 -5 6167 4837 587 234 0 0 chr3 197917 198045 -227326533 - AluJo SINE Alu -178 134 7 1153 199 72 13 chr3 198061 198099 -227326479 - L1M4 LINE L1 -581 5597 5563 3508 22 0 2 chr3 198099 198546 -227326032 + L1PA4 LINE L1 5732 6177 0 1153 199 72 13 chr3 198546 198812 -227325766 - L1M4 LINE L1 -615 5563 5274 1557 230 0 7 chr3 198820 199124 -227325454 - AluJo SINE Alu -2 310 9 3285 89 6 2 chr3 199273 199756 -227324822 - L1P LINE L1 -4933 1213 729 * 25180 46 0 1 chr3 199755 203251 -227321327 + L1PA3 LINE L1 2079 5570 -585 2104 42 0 4 chr3 203351 203612 -227320966 + L1PA3 LINE L1 5895 6154 -1 10061 205 18 6 chr3 203612 206576 -227318002 + L1PA15 LINE L1 2815 5818 -347 419 218 0 10 chr3 206584 206685 -227317893 + L1P LINE L1 4066 4165 -1981 * 1198 223 12 80 chr3 206675 206795 -227317783 + L1MA9 LINE L1 5817 5944 -368 1697 171 29 6 chr3 206795 207089 -227317489 + L1PA15 LINE L1 5831 6152 -13 1198 223 12 80 chr3 207089 207457 -227317121 + L1MA9 LINE L1 5944 6272 -40 8271 194 44 46 chr3 207519 208623 -227315955 + L1MB1 LINE L1 2823 3929 -2239 1761 188 3 0 chr3 208623 208915 -227315663 + AluJb SINE Alu 7 299 -13 8271 194 44 46 chr3 208915 210785 -227313793 + L1MB1 LINE L1 3929 5799 -369 1400 203 30 36 chr3 210785 211086 -227313492 + AluJo SINE Alu 1 299 -3 8271 194 44 46 chr3 211086 211454 -227313124 + L1MB1 LINE L1 5799 6167 -1 1630 199 0 13 chr3 211730 212041 -227312537 - AluJb SINE Alu -3 309 3 1710 192 13 16 chr3 212047 212360 -227312218 - AluJo SINE Alu 0 312 1 237 132 0 0 chr3 212695 212733 -227311845 + (TG)n Simple_repeat Simple_repeat 1 38 0 * 291 54 0 0 chr3 212732 212769 -227311809 + (GA)n Simple_repeat Simple_repeat 1 37 0 360 236 73 16 chr3 213001 213124 -227311454 + MIR SINE MIR 105 234 -28 423 330 124 57 chr3 214536 214972 -227309606 - L2 LINE L2 0 3272 2808 1820 161 16 3 chr3 215010 215315 -227309263 - MER1B DNA MER1_type 0 339 31 410 303 103 44 chr3 215363 215769 -227308809 - L2 LINE L2 -666 2648 2219 1052 323 89 19 chr3 216099 216570 -227308008 + L3 LINE CR1 1051 1554 -23 246 95 0 0 chr3 216644 216686 -227307892 + (T)n Simple_repeat Simple_repeat 1 42 0 1523 195 41 21 chr3 217267 217556 -227307022 + MSTB2 LTR MaLR 1 299 -158 2916 137 5 2 chr3 217556 218003 -227306575 + MER83 LTR ERV1 1 448 0 1523 195 41 21 chr3 218003 218051 -227306527 + MSTB2 LTR MaLR 299 345 -112 241 339 106 22 chr3 219061 219241 -227305337 + MIR SINE MIR 64 258 -4 2283 101 6 20 chr3 219933 220279 -227304299 + L1PA13 LINE L1 5822 6162 -1 32 43 0 0 chr3 220347 220393 -227304185 + AT_rich Low_complexity Low_complexity 1 46 0 224 231 31 0 chr3 220460 220525 -227304053 + (CAA)n Simple_repeat Simple_repeat 2 68 0 236 100 25 0 chr3 220781 220821 -227303757 + (TG)n Simple_repeat Simple_repeat 2 42 0 2047 173 69 6 chr3 221020 221458 -227303120 + MER31A LTR ERV1 3 531 -12 243 0 0 0 chr3 221460 221487 -227303091 + (T)n Simple_repeat Simple_repeat 1 27 0 25 0 0 0 chr3 222328 222353 -227302225 + AT_rich Low_complexity Low_complexity 1 25 0 408 279 149 13 chr3 222363 222517 -227302061 - MIR SINE MIR -42 220 46 577 146 0 176 chr3 222706 222871 -227301707 + AluJb SINE Alu 85 220 -92 23 0 0 0 chr3 222900 222923 -227301655 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 222952 222973 -227301605 + AT_rich Low_complexity Low_complexity 1 21 0 37682 67 22 1 chr3 223211 229221 -227295357 - L1PA5 LINE L1 -11 6143 3 541 177 31 0 chr3 229947 230043 -227294535 + FLAM_A SINE Alu 3 101 -41 2068 116 10 16 chr3 231830 232140 -227292438 - AluSq SINE Alu -5 308 1 2019 96 88 6 chr3 232142 232485 -227292093 - L1MA3 LINE L1 0 6305 5935 21219 171 28 23 chr3 232491 237680 -227286898 - L1PA10 LINE L1 -3 6480 1316 206 0 69 0 chr3 237680 237709 -227286869 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 21219 171 28 23 chr3 237709 237998 -227286580 - L1PA10 LINE L1 -5167 1316 1030 4059 149 18 73 chr3 237998 238829 -227285749 - LTR1 LTR ERV1 0 785 1 21219 171 28 23 chr3 238829 239729 -227284849 - L1PA10 LINE L1 -5453 1030 20 3995 125 0 2 chr3 239729 240369 -227284209 - L1MA3 LINE L1 -353 5952 5314 753 224 29 24 chr3 240914 241084 -227283494 + FRAM SINE Alu 1 164 -12 300 319 80 11 chr3 241452 241640 -227282938 + L2 LINE L2 2241 2441 -873 261 420 13 21 chr3 242047 242283 -227282295 - L2 LINE L2 -214 3058 2825 442 282 24 32 chr3 242451 242575 -227282003 - L2 LINE L2 -4 3268 3146 3307 207 32 10 chr3 242575 242822 -227281756 + L1MA7 LINE L1 5318 5558 -745 2022 215 99 72 chr3 242822 243626 -227280952 - LTR1B LTR ERV1 0 826 1 3307 207 32 10 chr3 243626 244275 -227280303 + L1MA7 LINE L1 5558 6293 -10 444 289 15 22 chr3 245209 245344 -227279234 + MIR3 SINE MIR 42 175 -33 1667 52 0 0 chr3 245766 245976 -227278602 - L1PA3 LINE L1 0 6155 5946 801 257 87 10 chr3 246131 246440 -227278138 - L1ME3A LINE L1 -315 5855 5523 13728 212 33 16 chr3 246776 247175 -227277403 + L1MA5 LINE L1 1747 2138 -5224 2001 155 0 0 chr3 247175 247466 -227277112 + AluSx SINE Alu 3 293 -19 13728 212 33 16 chr3 247466 248377 -227276201 + L1MA5 LINE L1 2138 3032 -4330 924 145 0 0 chr3 248377 248529 -227276049 + L1PA14 LINE L1 6009 6160 -1 13728 212 33 16 chr3 248529 252680 -227271898 + L1MA5 LINE L1 3032 7337 -25 22 88 0 0 chr3 252715 252772 -227271806 + AT_rich Low_complexity Low_complexity 1 57 0 1380 266 85 33 chr3 253690 254325 -227270253 - HAL1 LINE L1 0 2507 1840 * 1488 206 49 25 chr3 254320 254728 -227269850 - L1M4 LINE L1 -913 5233 4816 252 295 80 27 chr3 254863 254975 -227269603 + L2 LINE L2 3150 3267 -5 1650 184 14 102 chr3 255593 256093 -227268485 - L1M4 LINE L1 -1322 4824 4369 21 82 0 0 chr3 256148 256197 -227268381 + AT_rich Low_complexity Low_complexity 1 49 0 4433 245 73 15 chr3 256404 257239 -227267339 - L1M4 LINE L1 -1777 4369 3584 2256 54 7 0 chr3 257239 257567 -227267011 - AluY SINE Alu 0 332 3 4433 245 73 15 chr3 257567 258230 -227266348 - L1M4 LINE L1 -2562 3584 2783 989 270 42 46 chr3 258234 258760 -227265818 + L1ME3A LINE L1 4323 4846 -1300 521 178 51 0 chr3 258883 259001 -227265577 + L1MA8 LINE L1 6164 6287 -4 244 291 8 30 chr3 259030 259164 -227265414 + L1ME3A LINE L1 4963 5093 -1053 443 35 0 0 chr3 259175 259232 -227265346 - L1PA6 LINE L1 -5 6149 6093 228 222 0 0 chr3 260432 260504 -227264074 + T-rich Low_complexity Low_complexity 1 72 0 22827 189 14 28 chr3 260506 267048 -227257530 - L1PA10 LINE L1 0 6483 10 1365 294 48 53 chr3 267067 268148 -227256430 + L1ME3A LINE L1 5088 6162 -8 22 56 0 0 chr3 268303 268339 -227256239 + AT_rich Low_complexity Low_complexity 1 36 0 253 259 21 98 chr3 268377 268520 -227256058 + Charlie7 DNA MER1_type 463 594 -2018 2210 133 58 24 chr3 268573 268987 -227255591 - MSTA LTR MaLR 0 428 1 380 192 93 41 chr3 269118 269290 -227255288 + Charlie7 DNA MER1_type 2404 2584 -28 34 65 0 0 chr3 269398 269460 -227255118 + AT_rich Low_complexity Low_complexity 1 62 0 3493 159 53 9 chr3 269783 270476 -227254102 - L1MA8 LINE L1 -4 6287 5564 287 71 0 24 chr3 270476 270518 -227254060 - MLT2A1 LTR ERVL -2 451 411 304 193 50 25 chr3 270523 270684 -227253894 + (TTATA)n Simple_repeat Simple_repeat 4 168 0 2318 84 16 0 chr3 270684 270992 -227253586 - MLT2A1 LTR ERVL -131 313 1 41944 91 5 6 chr3 270992 276649 -227247929 - HERVL-A1 LTR ERVL 0 5654 1 2264 151 36 23 chr3 276649 277087 -227247491 - MLT2A1 LTR ERVL 0 444 1 2123 167 18 5 chr3 277090 277667 -227246911 - L1MA8 LINE L1 -725 5566 4981 21 36 0 0 chr3 277677 277705 -227246873 + AT_rich Low_complexity Low_complexity 1 28 0 12717 194 30 13 chr3 277705 280075 -227244503 - L1PB2 LINE L1 -7 6201 3740 2008 164 86 5 chr3 280075 280471 -227244107 - MSTA LTR MaLR 0 428 1 12717 194 30 13 chr3 280471 282144 -227242434 - L1PB2 LINE L1 -2468 3740 2096 1341 146 0 14 chr3 282149 282361 -227242217 + AluSq SINE Alu 89 297 -16 3071 175 40 3 chr3 282363 282970 -227241608 - L1PB2 LINE L1 -4157 2047 1419 2500 196 50 0 chr3 282980 283677 -227240901 - L1PB2 LINE L1 -4920 1284 551 453 364 12 0 chr3 283690 283852 -227240726 + MIR3 SINE MIR 45 208 0 1146 158 34 49 chr3 284628 284894 -227239684 + L1MA1 LINE L1 6037 6298 -4 189 295 21 32 chr3 285024 285119 -227239459 + L3b LINE CR1 1268 1361 -222 267 290 63 50 chr3 285468 285588 -227238990 + MIR3 SINE MIR 78 199 -9 453 171 0 0 chr3 286856 286932 -227237646 + L1P LINE L1 3525 3600 -2546 17190 170 32 14 chr3 286937 287406 -227237172 - L1M1 LINE L1 -4132 3433 2974 2147 128 0 0 chr3 287406 287704 -227236874 - AluSg SINE Alu -11 299 2 17190 170 32 14 chr3 287704 290451 -227234127 - L1M1 LINE L1 -4591 2974 37 562 387 6 0 chr3 290458 290773 -227233805 - L1MC4a LINE L1 -1979 5829 5513 1883 154 36 30 chr3 290818 291148 -227233430 + THE1B LTR MaLR 1 332 -32 1511 184 27 0 chr3 291306 291589 -227232989 + AluSx SINE Alu 15 304 0 591 196 108 6 chr3 291589 291755 -227232823 - L1MC2 LINE L1 -226 6118 5961 299 186 34 0 chr3 291774 291833 -227232745 - AluJ/FLAM SINE Alu -217 85 25 639 237 50 32 chr3 291850 292069 -227232509 - L1MC4 LINE L1 -13 8029 7807 14449 104 9 1 chr3 292305 294703 -227229875 - L1PA7 LINE L1 -3 6466 4088 336 64 0 0 chr3 294703 294750 -227229828 + (TTG)n Simple_repeat Simple_repeat 2 48 0 14449 104 9 1 chr3 294750 297059 -227227519 - L1PA7 LINE L1 -2381 4088 1671 24 32 0 0 chr3 297285 297316 -227227262 + AT_rich Low_complexity Low_complexity 1 31 0 457 318 24 16 chr3 297905 298157 -227226421 + L1ME LINE L1 4592 4845 -1301 364 272 127 13 chr3 298304 298462 -227226116 - L2 LINE L2 0 3313 3138 312 281 30 7 chr3 298521 298656 -227225922 + L1ME LINE L1 5691 5828 -334 435 327 42 0 chr3 298934 299099 -227225479 + MIR SINE MIR 20 191 -71 22 0 0 0 chr3 299139 299161 -227225417 + AT_rich Low_complexity Low_complexity 1 22 0 221 281 206 7 chr3 299161 299307 -227225271 + MIR SINE MIR 88 262 0 2089 123 7 3 chr3 300467 300760 -227223818 + AluSc SINE Alu 3 296 -13 2085 127 0 0 chr3 300767 301082 -227223496 + AluSx SINE Alu 1 315 0 1900 181 40 44 chr3 301164 301592 -227222986 + MSTB LTR MaLR 1 375 0 490 257 68 14 chr3 301842 301990 -227222588 + MIR3 SINE MIR 15 170 -38 251 73 0 0 chr3 301994 302035 -227222543 + L1PA6 LINE L1 6114 6154 0 208 286 189 51 chr3 302334 302509 -227222069 + L3 LINE CR1 1352 1550 -27 377 356 67 0 chr3 302994 303174 -227221404 + MIR SINE MIR 69 260 -2 208 139 0 0 chr3 303177 303213 -227221365 + (T)n Simple_repeat Simple_repeat 1 36 0 186 133 0 0 chr3 303233 303263 -227221315 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 26396 76 5 2 chr3 303268 307805 -227216773 - L1PA6 LINE L1 -1 6153 1608 4878 168 10 29 chr3 307860 309254 -227215324 + L1P LINE L1 8 1536 -4610 348 142 44 0 chr3 309288 309364 -227215214 - L1MA4A LINE L1 -185 6820 6738 985 47 0 0 chr3 309382 309510 -227215068 + L1P LINE L1 2918 3045 -3101 * 7265 81 2 2 chr3 309503 310560 -227214018 - L1P LINE L1 -3219 2927 1871 6665 234 55 9 chr3 310556 314458 -227210120 - L1MA4A LINE L1 -256 6749 2635 * 2439 171 13 19 chr3 314458 314919 -227209659 - LTR22A LTR ERVK 0 458 1 11441 135 2 5 chr3 314920 316883 -227207695 - HERVK22 LTR ERVK -1 6836 3188 9943 122 4 1 chr3 316889 318385 -227206193 - HERVK22 LTR ERVK -3193 3644 2144 5777 118 22 14 chr3 318385 318733 -227205845 - HERVK22 LTR ERVK -5902 935 591 2697 26 0 0 chr3 318733 319040 -227205538 - AluYb8 SINE Alu -11 307 1 5777 118 22 14 chr3 319040 319617 -227204961 - HERVK22 LTR ERVK -6246 591 3 2439 167 31 22 chr3 319619 320069 -227204509 - LTR22A LTR ERVK 0 458 5 3504 196 36 13 chr3 320072 320925 -227203653 - L1MA4A LINE L1 -4209 2640 1768 23 33 0 0 chr3 321019 321049 -227203529 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr3 321082 321114 -227203464 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr3 321184 321219 -227203359 + AT_rich Low_complexity Low_complexity 1 35 0 285 229 84 0 chr3 321308 321391 -227203187 - MIR SINE MIR -109 153 64 180 0 0 0 chr3 321731 321751 -227202827 + (CA)n Simple_repeat Simple_repeat 2 21 0 205 260 123 68 chr3 322269 322415 -227202163 - MER5A DNA MER1_type -1 188 35 543 354 14 7 chr3 322927 323071 -227201507 - MER91A DNA MER1_type -1 195 51 197 340 128 0 chr3 323196 323290 -227201288 - L2 LINE L2 -9 3263 3158 10429 150 35 5 chr3 323499 325351 -227199227 + Tigger1 DNA MER2_type 2 1907 -511 259 203 0 31 chr3 325360 325424 -227199154 + (CATA)n Simple_repeat Simple_repeat 2 63 0 435 163 0 0 chr3 325426 325506 -227199072 + Tigger1 DNA MER2_type 1896 1975 -443 10575 218 28 35 chr3 325506 330453 -227194125 + L1PA15-16 LINE L1 8 4692 -2157 5871 132 1 5 chr3 330454 331425 -227193153 + L1P LINE L1 3560 4526 -1620 1699 132 3 0 chr3 331423 331710 -227192868 + L1P LINE L1 4869 5156 -990 * 15789 133 7 8 chr3 331720 333552 -227191026 - L1P LINE L1 -1119 5027 3200 1526 97 9 44 chr3 333552 333779 -227190799 - AluY SINE Alu -9 302 84 15789 133 7 8 chr3 333779 334683 -227189895 - L1P LINE L1 -2946 3200 2296 625 261 61 6 chr3 334676 334856 -227189722 + L1M1 LINE L1 161 350 -7215 * 11492 196 35 9 chr3 334965 337285 -227187293 + L1M1 LINE L1 298 2677 -4888 7514 31 1 3 chr3 337286 338655 -227185923 + L1PA4 LINE L1 4789 6155 0 2388 155 32 0 chr3 338657 339095 -227185483 + Tigger1 DNA MER2_type 1966 2417 -1 1551 257 89 67 chr3 339752 340518 -227184060 - L2 LINE L2 0 3313 2513 642 154 83 6 chr3 340528 340684 -227183894 + L1M4 LINE L1 5180 5347 -799 2709 190 6 2 chr3 340698 341204 -227183374 + L1PA10 LINE L1 1 508 -5367 2324 183 15 28 chr3 341204 341742 -227182836 + L1PA10 LINE L1 717 1274 -4734 26400 74 5 1 chr3 341800 347925 -227176653 + L1PA5 LINE L1 11 6154 0 203 0 37 0 chr3 347972 347999 -227176579 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 23919 151 14 9 chr3 348013 348289 -227176289 + L1PA10 LINE L1 1311 1584 -4899 840 104 16 0 chr3 348289 348414 -227176164 + L1PA5 LINE L1 6020 6146 -8 23919 151 14 9 chr3 348414 350820 -227173758 + L1PA10 LINE L1 1584 3978 -2505 462 18 0 0 chr3 350820 350875 -227173703 + (CA)n Simple_repeat Simple_repeat 2 56 0 23919 151 14 9 chr3 350875 353339 -227171239 + L1PA10 LINE L1 3978 6473 -10 322 26 105 0 chr3 353339 353415 -227171163 + (TA)n Simple_repeat Simple_repeat 2 85 0 2429 222 65 9 chr3 353418 354184 -227170394 + L1ME1 LINE L1 5330 6160 -6 2177 254 35 5 chr3 354201 354779 -227169799 - L2 LINE L2 -793 2521 1927 1941 96 4 46 chr3 355283 355563 -227169015 + AluSc SINE Alu 3 270 -39 278 65 0 22 chr3 355575 355621 -227168957 + (TAAA)n Simple_repeat Simple_repeat 3 47 0 1930 184 0 48 chr3 355621 355997 -227168581 + MLT1B LTR MaLR 33 390 0 563 257 14 35 chr3 356507 356651 -227167927 - MIR3 SINE MIR -52 156 16 445 329 74 25 chr3 356721 356964 -227167614 - MIR SINE MIR 0 262 8 2668 215 77 10 chr3 357052 357674 -227166904 + L1MDa LINE L1 31 694 -5846 1455 164 0 33 chr3 357680 357984 -227166594 + L1 LINE L1 4317 4610 -1536 463 248 94 0 chr3 357987 358104 -227166474 + FLAM_C SINE Alu 1 128 -15 191 272 130 53 chr3 358422 358591 -227165987 + L2 LINE L2 3130 3311 -2 6468 68 4 71 chr3 359000 360154 -227164424 + L1PA8 LINE L1 5083 6170 -2 2970 246 22 22 chr3 360168 361211 -227163367 - L1MB7 LINE L1 -16 6168 5127 5601 25 28 0 chr3 361211 361889 -227162689 - L1PA4 LINE L1 -2 6153 5457 2970 246 22 22 chr3 361889 362451 -227162127 - L1MB7 LINE L1 -1057 5127 4566 396 189 0 0 chr3 362451 362525 -227162053 - L1MD3 LINE L1 -190 7805 7732 * 801 248 38 17 chr3 362522 362952 -227161626 - L1MEc LINE L1 -4259 2137 1655 442 218 0 0 chr3 362961 363048 -227161530 + MER54B LTR ERVL 701 787 -6 361 324 85 0 chr3 463089 463265 -227061313 - L1ME4a LINE L1 -206 5915 5725 297 301 130 21 chr3 466532 466771 -227057807 - MLT1J LTR MaLR -19 492 228 201 161 18 71 chr3 467327 467383 -227057195 + L2 LINE L2 2507 2559 -755 1104 289 43 109 chr3 467833 469046 -227055532 - L2 LINE L2 -2 3311 2176 1081 182 14 5 chr3 469046 469260 -227055318 - MER58A DNA MER1_type 0 224 9 190 294 119 16 chr3 469271 469397 -227055181 - L2 LINE L2 -1135 2179 2041 366 307 26 9 chr3 469462 469576 -227055002 - MIR3 SINE MIR -6 202 87 339 300 44 128 chr3 469718 469905 -227054673 - L2 LINE L2 -3 3269 3111 1508 186 95 23 chr3 469905 470254 -227054324 + MLT1A2 LTR MaLR 1 374 0 339 300 44 128 chr3 470254 470339 -227054239 - L2 LINE L2 -161 3111 3020 721 292 4 30 chr3 470771 471007 -227053571 - MIR SINE MIR -10 252 23 674 329 44 17 chr3 471226 471570 -227053008 - L2 LINE L2 -766 2548 2196 23 33 0 0 chr3 471811 471841 -227052737 + AT_rich Low_complexity Low_complexity 1 30 0 267 31 0 0 chr3 472509 472541 -227052037 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 2122 97 4 0 chr3 472547 472825 -227051753 - AluSg SINE Alu -31 279 1 233 326 0 0 chr3 473035 473127 -227051451 - MLT1H LTR MaLR -4 545 454 322 247 22 22 chr3 473265 473354 -227051224 - MLT1H LTR MaLR -325 224 136 2514 211 3 63 chr3 475388 475977 -227048601 + MLT2B3 LTR ERVL 1 554 0 798 264 111 97 chr3 476016 476708 -227047870 - MER21B LTR ERV1 -150 713 12 219 183 39 19 chr3 476730 476834 -227047744 + (TA)n Simple_repeat Simple_repeat 1 106 0 379 270 0 0 chr3 476894 476983 -227047595 - Tigger7 DNA MER2_type 0 2487 2399 315 119 15 30 chr3 477922 477989 -227046589 + Alu SINE Alu 235 300 0 1810 152 7 0 chr3 478074 478351 -227046227 - AluSx SINE Alu -33 279 1 429 318 68 36 chr3 478509 478729 -227045849 + MIR SINE MIR 22 248 -14 943 331 78 18 chr3 479765 480412 -227044166 - L2 LINE L2 -4 3309 2610 1363 210 57 20 chr3 480412 480764 -227043814 - MLT1A1 LTR MaLR 0 365 1 943 331 78 18 chr3 480764 480931 -227043647 - L2 LINE L2 -703 2610 2455 349 217 29 0 chr3 481127 481196 -227043382 - MER58 DNA MER1_type 0 2420 2350 242 348 34 0 chr3 482326 482444 -227042134 - MIR SINE MIR -2 260 139 683 288 23 0 chr3 482479 482656 -227041922 + MIR SINE MIR 56 236 -26 1350 176 146 5 chr3 483059 483428 -227041150 + MSTB1 LTR MaLR 8 428 -4 601 211 0 23 chr3 484561 484694 -227039884 + MER5A DNA MER1_type 1 130 -59 224 233 16 16 chr3 485183 485245 -227039333 + MIR SINE MIR 93 147 -61 784 248 70 33 chr3 485255 485497 -227039081 - MIR SINE MIR -10 252 2 1893 209 76 15 chr3 485679 486153 -227038425 - MLT1D LTR MaLR 0 505 3 825 200 0 0 chr3 487074 487214 -227037364 + FRAM SINE Alu 18 157 -19 370 357 7 29 chr3 487531 487671 -227036907 - L2 LINE L2 -2 3270 3134 273 293 113 0 chr3 487700 487806 -227036772 - MIR SINE MIR -2 260 143 426 267 14 34 chr3 489461 489607 -227034971 + Charlie8 DNA MER1_type 1 143 -2274 372 306 200 0 chr3 491440 491600 -227032978 + MIR3 SINE MIR 16 207 -1 679 254 20 5 chr3 492197 492398 -227032180 - MER3 DNA MER1_type 0 209 6 316 264 231 0 chr3 492548 492669 -227031909 - MIR SINE MIR -91 171 23 186 171 0 0 chr3 492742 492783 -227031795 + (CAT)n Simple_repeat Simple_repeat 2 42 0 256 287 35 61 chr3 493266 493381 -227031197 - L2 LINE L2 0 3272 3161 604 251 94 21 chr3 493435 493626 -227030952 + MER63A DNA MER1_type 1 205 -5 190 130 19 37 chr3 493628 493682 -227030896 + (TTATA)n Simple_repeat Simple_repeat 2 54 0 181 132 19 19 chr3 493708 493761 -227030817 + (TATAA)n Simple_repeat Simple_repeat 5 57 0 317 187 9 17 chr3 493811 494031 -227030547 + AluJo SINE Alu 16 295 -6 290 303 98 16 chr3 494136 494258 -227030320 + MIR SINE MIR 110 241 -21 329 380 25 13 chr3 494326 494484 -227030094 - L2 LINE L2 -177 3095 2936 617 343 58 29 chr3 496442 496818 -227027760 + L2 LINE L2 2841 3227 -86 1895 228 82 8 chr3 496875 497376 -227027202 + MLT1F LTR MaLR 3 540 -2 750 255 27 0 chr3 498871 499059 -227025519 - MER20 DNA MER1_type 0 219 27 2145 201 14 14 chr3 499149 499577 -227025001 - MSTA LTR MaLR 0 428 1 342 331 35 7 chr3 499603 499748 -227024830 - MIR3 SINE MIR -5 203 55 612 273 67 29 chr3 500132 500341 -227024237 + MIR SINE MIR 39 255 -7 23 54 0 0 chr3 501312 501349 -227023229 + AT_rich Low_complexity Low_complexity 1 37 0 217 256 133 44 chr3 501517 501607 -227022971 + MIR3 SINE MIR 3 100 -108 22 0 0 0 chr3 501930 501952 -227022626 + AT_rich Low_complexity Low_complexity 1 22 0 1092 182 47 14 chr3 502583 502941 -227021637 - MER61B LTR ERV1 -36 389 1 24 32 0 0 chr3 503084 503115 -227021463 + AT_rich Low_complexity Low_complexity 1 31 0 1521 168 29 59 chr3 503281 503656 -227020922 + MLT2D LTR ERVL 3 366 -48 388 104 13 13 chr3 503656 503704 -227020874 + (TC)n Simple_repeat Simple_repeat 1 51 -26 279 0 0 0 chr3 503704 503735 -227020843 + (TG)n Simple_repeat Simple_repeat 2 32 0 388 104 13 13 chr3 503735 503763 -227020815 + (TC)n Simple_repeat Simple_repeat 50 77 0 227 114 0 0 chr3 503769 503804 -227020774 + MLT2D LTR ERVL 430 464 0 1595 184 150 36 chr3 504017 504369 -227020209 - MLT1D LTR MaLR -8 497 82 4011 80 30 2 chr3 504369 504908 -227019670 + MER41A LTR ERV1 1 554 0 1595 184 150 36 chr3 504908 505001 -227019577 - MLT1D LTR MaLR -423 82 1 189 290 11 75 chr3 505224 505317 -227019261 - L2 LINE L2 -54 3259 3173 320 327 79 0 chr3 505327 505428 -227019150 - L2 LINE L2 -774 2540 2432 248 192 68 27 chr3 505544 505617 -227018961 + L1M3 LINE L1 5367 5442 -729 462 350 53 31 chr3 505714 506034 -227018544 + L1ME LINE L1 5477 5803 -318 768 345 75 18 chr3 506491 506891 -227017687 + L3 LINE CR1 904 1326 -251 354 301 44 65 chr3 507023 507408 -227017170 + MLT1J1 LTR MaLR 50 426 -20 351 335 197 0 chr3 507557 507775 -227016803 + L3 LINE CR1 1316 1576 -1 1061 314 133 13 chr3 508575 509325 -227015253 - L2 LINE L2 0 3313 2486 2550 291 95 34 chr3 509381 510035 -227014543 - L2 LINE L2 -2015 1299 686 2323 100 3 0 chr3 510035 510345 -227014233 + AluY SINE Alu 1 311 0 2550 291 95 34 chr3 510345 510883 -227013695 - L2 LINE L2 -2628 686 34 357 213 43 156 chr3 511484 511625 -227012953 - L2 LINE L2 -1 3312 3188 985 204 88 4 chr3 512005 512255 -227012323 - ORSL DNA AcHobo -3 272 2 186 189 0 0 chr3 514347 514384 -227010194 + (TCCA)n Simple_repeat Simple_repeat 1 37 0 311 285 74 104 chr3 514384 514710 -227009868 - L2 LINE L2 -2 3311 2996 232 237 66 26 chr3 515201 515277 -227009301 - MIR SINE MIR -16 246 168 517 205 192 26 chr3 515281 515432 -227009146 + MER5A DNA MER1_type 9 184 -5 355 354 9 0 chr3 515461 515574 -227009004 - MIR SINE MIR -116 146 33 1526 211 0 4 chr3 515600 515879 -227008699 - AluJb SINE Alu -29 283 6 1170 121 156 0 chr3 515943 516142 -227008436 - MER30 DNA MER1_type 0 230 1 1597 154 130 17 chr3 516625 516970 -227007608 + MLT1B LTR MaLR 5 388 -2 276 100 0 0 chr3 517125 517165 -227007413 + (TG)n Simple_repeat Simple_repeat 2 41 0 1526 214 128 49 chr3 518478 518604 -227005974 - L1MCb LINE L1 -4851 1194 1079 1969 144 0 10 chr3 518604 518759 -227005819 - AluSx SINE Alu -24 288 136 2095 119 20 3 chr3 518759 519054 -227005524 - AluSx SINE Alu -12 300 1 1969 144 0 10 chr3 519054 519189 -227005389 - AluSx SINE Alu -176 136 1 1526 214 128 49 chr3 519189 519846 -227004732 - L1MCb LINE L1 -4966 1079 619 198 91 0 0 chr3 519846 519879 -227004699 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 307 240 58 19 chr3 519884 519988 -227004590 - LTR19C LTR ERV1 0 779 672 915 93 0 0 chr3 519988 520106 -227004472 + AluSg1 SINE Alu 1 118 -191 1860 206 47 67 chr3 520136 520670 -227003908 - LTR9 LTR ERV1 -89 523 1 312 146 0 0 chr3 520670 520718 -227003860 - Alu SINE Alu -20 282 235 1034 296 25 46 chr3 520903 521160 -227003418 - L1MCb LINE L1 -5475 570 324 2130 52 0 0 chr3 521160 521429 -227003149 + AluY SINE Alu 37 305 -6 1034 296 25 46 chr3 521429 521610 -227002968 - L1MCb LINE L1 -5721 324 141 273 228 63 47 chr3 521610 521737 -227002841 - L1MCb LINE L1 -6296 268 140 658 243 17 65 chr3 522089 522443 -227002135 + MER34B LTR ERV1 4 381 -184 1355 173 9 0 chr3 522448 522673 -227001905 - AluJo SINE Alu -2 310 84 356 238 85 43 chr3 522688 522816 -227001762 + MER34B LTR ERV1 395 533 -32 1387 222 73 9 chr3 522816 523159 -227001419 - MLT1A1 LTR MaLR 0 365 1 356 238 85 43 chr3 523159 523194 -227001384 + MER34B LTR ERV1 533 565 0 192 276 92 72 chr3 523320 523472 -227001106 - MIR SINE MIR -77 185 31 1712 215 66 17 chr3 523595 524065 -227000513 - MLT1D LTR MaLR -8 497 5 321 47 0 0 chr3 524068 524111 -227000467 + (GA)n Simple_repeat Simple_repeat 2 44 0 340 171 14 0 chr3 524599 524669 -226999909 - MER116 DNA Mariner -9 71 1 236 302 23 0 chr3 525538 525624 -226998954 + (TATG)n Simple_repeat Simple_repeat 1 88 0 * 293 294 5 53 chr3 525561 525748 -226998830 + (TG)n Simple_repeat Simple_repeat 2 179 0 375 307 12 18 chr3 525797 525960 -226998618 + (TG)n Simple_repeat Simple_repeat 1 162 0 333 174 0 0 chr3 525996 526065 -226998513 + (TG)n Simple_repeat Simple_repeat 1 69 0 21 36 0 0 chr3 527110 527138 -226997440 + AT_rich Low_complexity Low_complexity 1 28 0 2572 108 3 18 chr3 530114 530495 -226994083 + THE1C LTR MaLR 1 375 0 759 284 102 0 chr3 531222 531458 -226993120 + MIR SINE MIR 3 262 0 230 421 86 17 chr3 531461 531694 -226992884 - L2 LINE L2 -15 3257 3009 757 136 116 61 chr3 531714 531912 -226992666 - L1MA6 LINE L1 -271 6029 5821 389 222 30 30 chr3 532124 532259 -226992319 + MER69 DNA AcHobo 2380 2514 -12 2478 56 3 0 chr3 532686 532989 -226991589 - AluY SINE Alu -7 304 1 4514 72 7 0 chr3 533017 533603 -226990975 + LTR10C LTR ERV1 1 590 -1 25 65 0 0 chr3 533840 533886 -226990692 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr3 534636 534660 -226989918 + AT_rich Low_complexity Low_complexity 1 24 0 34 84 0 0 chr3 534880 534963 -226989615 + AT_rich Low_complexity Low_complexity 1 83 0 2602 175 58 0 chr3 535877 536363 -226988215 + Tigger7 DNA MER2_type 1 514 -1973 541 140 0 56 chr3 536352 536459 -226988119 + Tigger7 DNA MER2_type 2391 2491 0 * 435 197 205 0 chr3 536540 536657 -226987921 + MIR SINE MIR 49 189 -73 229 256 68 105 chr3 536741 536874 -226987704 + MIR SINE MIR 103 230 -32 21 36 0 0 chr3 537061 537089 -226987489 + AT_rich Low_complexity Low_complexity 1 28 0 459 256 56 0 chr3 538232 538392 -226986186 + (CATATA)n Simple_repeat Simple_repeat 4 172 0 805 216 125 4 chr3 539082 539314 -226985264 - MIR SINE MIR -1 261 2 285 270 11 11 chr3 539456 539545 -226985033 + MIR SINE MIR 76 164 -98 1923 195 158 27 chr3 539545 540239 -226984339 + LTR48 LTR ERV1 1 707 0 423 274 0 0 chr3 540239 540341 -226984237 + MIR SINE MIR 161 262 0 331 297 86 38 chr3 540658 540971 -226983607 + L1ME4a LINE L1 5726 6053 -68 1530 158 75 0 chr3 541641 541919 -226982659 + MSTB1 LTR MaLR 134 432 0 358 312 85 0 chr3 541922 542063 -226982515 + MIR SINE MIR 108 260 -2 1385 233 34 79 chr3 542068 542597 -226981981 + MLT1D LTR MaLR 1 505 0 1671 163 3 14 chr3 542599 542906 -226981672 - AluJb SINE Alu 0 306 3 3386 222 11 50 chr3 542923 543815 -226980763 + MLT1D-int LTR MaLR 27 883 -488 1146 202 125 35 chr3 543902 544189 -226980389 + MLT1D-int LTR MaLR 880 1192 -179 1161 238 18 28 chr3 544279 544565 -226980013 + MLT1C LTR MaLR 185 467 0 261 368 30 30 chr3 545880 546013 -226978565 - MIR3 SINE MIR -70 138 6 303 299 64 45 chr3 546986 547067 -226977511 - L2 LINE L2 -7 3265 3187 2344 141 8 0 chr3 547067 547428 -226977150 + THE1B LTR MaLR 1 364 0 303 299 64 45 chr3 547428 547503 -226977075 - L2 LINE L2 -85 3187 3106 287 365 42 18 chr3 547547 547714 -226976864 - MIR SINE MIR -72 190 20 283 224 35 0 chr3 548295 548353 -226976225 + MER91C DNA MER1_type 64 123 -17 219 324 95 0 chr3 548438 548512 -226976066 + MIR3 SINE MIR 82 162 -46 750 161 0 60 chr3 548650 548799 -226975779 - FLAM_C SINE Alu -3 140 1 600 79 20 10 chr3 549359 549460 -226975118 + (GAA)n Simple_repeat Simple_repeat 1 102 0 889 211 0 0 chr3 549461 549627 -226974951 + FRAM SINE Alu 1 158 -18 283 338 63 24 chr3 549719 549926 -226974652 + MIR SINE MIR 20 234 -28 449 296 31 25 chr3 550503 550662 -226973916 + MIR SINE MIR 48 207 -55 1848 140 11 11 chr3 550677 550962 -226973616 - AluJb SINE Alu -27 285 1 21 57 0 0 chr3 551125 551160 -226973418 + AT_rich Low_complexity Low_complexity 1 35 0 293 256 144 38 chr3 552054 552214 -226972364 + MIR SINE MIR 60 236 -26 282 301 40 45 chr3 552294 552493 -226972085 - L1ME4a LINE L1 -192 5929 5732 189 271 235 0 chr3 552660 552745 -226971833 + MIR3 SINE MIR 100 204 -4 338 321 24 97 chr3 553038 553577 -226971001 + L2 LINE L2 2813 3312 -1 371 98 0 0 chr3 554252 554303 -226970275 + MADE1 DNA Mariner 1 51 -29 230 157 59 0 chr3 555409 555460 -226969118 - L1P LINE L1 -5516 630 577 822 147 0 0 chr3 555880 556009 -226968569 - FLAM_C SINE Alu -3 130 2 2972 131 9 6 chr3 556282 556748 -226967830 - MER41B LTR ERV1 0 635 169 1067 114 12 0 chr3 556850 557016 -226967562 - MER41B LTR ERV1 -467 168 1 240 283 87 0 chr3 557160 557252 -226967326 + MIR SINE MIR 71 170 -92 1800 161 0 3 chr3 558082 558368 -226966210 + MER49 LTR ERV1 1 285 -638 1159 236 56 25 chr3 558443 558727 -226965851 + MER4D LTR ERV1 555 847 -56 1570 149 11 48 chr3 558739 559079 -226965499 - MER61C LTR ERV1 -6 428 1 365 261 43 58 chr3 559553 559691 -226964887 - MLT1L LTR MaLR -42 573 438 192 234 16 121 chr3 560938 561062 -226963516 - MIR SINE MIR -11 251 141 5842 223 92 16 chr3 561242 563170 -226961408 - L1MDa LINE L1 -4277 2263 14 193 260 26 65 chr3 563171 563248 -226961330 - MER5A DNA MER1_type -114 75 2 * 261 261 22 97 chr3 563248 563378 -226961200 - MIR SINE MIR -69 139 20 204 327 45 36 chr3 564246 564356 -226960222 - L2 LINE L2 -6 3266 3156 261 349 0 0 chr3 564507 564590 -226959988 - L2 LINE L2 0 3272 3190 1972 114 14 21 chr3 565308 565598 -226958980 - AluSc SINE Alu -21 288 1 968 263 26 4 chr3 565804 566032 -226958546 + MIR SINE MIR 20 252 -10 232 289 12 60 chr3 566244 566327 -226958251 - MIR SINE MIR -109 99 21 233 355 13 0 chr3 566473 566549 -226958029 - L2 LINE L2 -14 3258 3182 22 0 0 0 chr3 566564 566586 -226957992 + AT_rich Low_complexity Low_complexity 1 22 0 1968 140 4 0 chr3 568948 569226 -226955352 + AluSx SINE Alu 1 279 -33 1467 224 7 0 chr3 569326 569607 -226954971 - Tigger7 DNA MER2_type -450 283 1 534 308 50 61 chr3 569761 570157 -226954421 - MER68 LTR ERV1 -20 542 151 471 366 98 17 chr3 570702 571050 -226953528 + L2 LINE L2 2804 3201 -112 261 0 0 0 chr3 571050 571079 -226953499 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 471 366 98 17 chr3 571079 571202 -226953376 + L2 LINE L2 3201 3313 0 201 381 48 24 chr3 571342 571510 -226953068 + MER5A DNA MER1_type 3 174 -15 1939 178 61 16 chr3 571618 572044 -226952534 - MER65A LTR ERV1 0 445 1 206 298 48 96 chr3 572131 572251 -226952327 + MIR SINE MIR 57 166 -96 5902 103 12 0 chr3 572251 573158 -226951420 - L1PA13 LINE L1 -3 6160 5230 206 298 48 96 chr3 573158 573225 -226951353 + MIR SINE MIR 166 235 -27 288 296 71 10 chr3 573587 573685 -226950893 + L2 LINE L2 3210 3313 0 233 329 0 47 chr3 573927 574012 -226950566 - L2 LINE L2 -42 3271 3191 1922 239 123 3 chr3 575386 575977 -226948601 - L1MC4 LINE L1 -143 7899 7238 2089 241 76 3 chr3 575986 576562 -226948016 - L1MC4 LINE L1 -966 7076 6459 207 204 0 41 chr3 576880 576929 -226947649 + GA-rich Low_complexity Low_complexity 5 51 0 25 0 0 0 chr3 577753 577778 -226946800 + AT_rich Low_complexity Low_complexity 1 25 0 1778 123 40 7 chr3 578215 578525 -226946053 - AluSx SINE Alu 0 319 1 254 273 225 23 chr3 579557 579667 -226944911 + MIR SINE MIR 36 171 -37 418 303 82 26 chr3 579757 579952 -226944626 + MIR SINE MIR 55 260 -2 29 0 0 0 chr3 580502 580531 -226944047 + AT_rich Low_complexity Low_complexity 1 29 0 566 289 142 0 chr3 580691 580888 -226943690 - MIR SINE MIR -8 254 30 580 292 53 19 chr3 582328 582537 -226942041 - MIR SINE MIR -1 261 46 201 347 31 10 chr3 583063 583161 -226941417 - L3 LINE CR1 -144 1433 1334 1918 233 93 14 chr3 583165 583650 -226940928 + MLT1E LTR MaLR 67 589 -4 227 129 0 0 chr3 583753 583784 -226940794 - L2 LINE L2 -20 3293 3263 4981 94 6 1 chr3 583827 584528 -226940050 - L1PA10 LINE L1 -12 6156 5453 346 314 96 13 chr3 584534 584690 -226939888 - MIR SINE MIR -48 214 46 679 258 0 12 chr3 584771 584934 -226939644 + AluJb SINE Alu 129 289 -23 627 235 37 31 chr3 585171 585333 -226939245 - AluJb SINE Alu -1 311 149 250 285 0 0 chr3 585358 585435 -226939143 - FRAM/FAM SINE Alu -94 81 14 234 206 0 0 chr3 586632 586695 -226937883 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 225 0 0 0 chr3 587156 587181 -226937397 + (CA)n Simple_repeat Simple_repeat 2 26 0 184 370 19 37 chr3 589236 589344 -226935234 + MIR SINE MIR 34 139 -123 21 57 0 0 chr3 589313 589348 -226935230 + AT_rich Low_complexity Low_complexity 1 35 0 * 22 0 0 0 chr3 589911 589933 -226934645 + AT_rich Low_complexity Low_complexity 1 22 0 2275 120 3 0 chr3 590245 590554 -226934024 - AluSx SINE Alu -2 310 1 533 261 72 26 chr3 592250 592556 -226932022 - L1ME4a LINE L1 -111 6010 5691 327 191 0 0 chr3 592853 592921 -226931657 + (TATG)n Simple_repeat Simple_repeat 2 69 0 189 200 67 50 chr3 593459 593519 -226931059 + L2 LINE L2 3252 3312 -1 213 39 0 0 chr3 593663 593689 -226930889 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1234 0 7 0 chr3 593693 593832 -226930746 - L1PA2 LINE L1 -13 6142 6003 602 198 39 82 chr3 593977 594159 -226930419 + MIR SINE MIR 78 251 -11 322 156 104 0 chr3 594873 594950 -226929628 - MIR SINE MIR -114 148 64 207 183 100 17 chr3 594952 595012 -226929566 - L2 LINE L2 0 3272 3208 221 333 48 67 chr3 595546 595711 -226928867 - MIR3 SINE MIR -9 199 38 1855 135 63 44 chr3 595760 596124 -226928454 + THE1C LTR MaLR 1 371 -4 304 393 61 9 chr3 596248 596477 -226928101 + MIR SINE MIR 14 254 -8 2190 107 9 25 chr3 597319 597637 -226926941 + AluSq SINE Alu 1 313 0 301 338 79 12 chr3 597890 598111 -226926467 - MIR SINE MIR -20 242 6 35 0 0 0 chr3 598262 598297 -226926281 + AT_rich Low_complexity Low_complexity 1 35 0 6036 140 14 5 chr3 598297 599682 -226924896 - L1PB1 LINE L1 -8 6143 4745 195 129 0 0 chr3 600854 600885 -226923693 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 2305 71 0 0 chr3 600993 601309 -226923269 + AluY SINE Alu 1 316 0 204 97 0 0 chr3 601346 601377 -226923201 + (CA)n Simple_repeat Simple_repeat 2 32 0 195 360 67 20 chr3 603981 604131 -226920447 + MIR SINE MIR 79 235 -27 783 172 30 24 chr3 607137 607306 -226917272 - L1MA10 LINE L1 -2 6332 6163 1110 248 22 101 chr3 608553 608653 -226915925 - MER34 LTR ERV1 -4 538 432 1751 159 11 0 chr3 608653 608923 -226915655 - AluJo SINE Alu -19 293 21 1110 248 22 101 chr3 608923 609406 -226915172 - MER34 LTR ERV1 -110 432 1 369 309 119 66 chr3 609581 609824 -226914754 - L2 LINE L2 -3 3269 3014 298 364 43 7 chr3 609991 610131 -226914447 + MIR SINE MIR 22 166 -96 524 248 16 23 chr3 610178 610307 -226914271 + MIR3 SINE MIR 74 201 -7 360 0 0 0 chr3 611041 611081 -226913497 + (TA)n Simple_repeat Simple_repeat 2 41 0 392 297 77 32 chr3 611666 611821 -226912757 + MIR SINE MIR 12 173 -89 371 284 76 56 chr3 612291 612488 -226912090 + L2 LINE L2 3113 3313 0 231 286 254 8 chr3 612584 612710 -226911868 - MIR SINE MIR -10 252 96 636 255 99 28 chr3 612720 612932 -226911646 + LTR16A LTR ERVL 16 242 -208 188 258 61 15 chr3 613187 613253 -226911325 - L2 LINE L2 -456 2858 2790 1160 196 57 75 chr3 613254 613626 -226910952 - MLT1A1 LTR MaLR 0 365 1 826 230 52 28 chr3 615142 615355 -226909223 + MER20 DNA MER1_type 2 219 0 211 363 39 0 chr3 615412 615514 -226909064 + L2 LINE L2 3167 3272 0 376 283 155 50 chr3 615807 616022 -226908556 - MER113 DNA MER1_type? 0 521 330 2223 113 7 0 chr3 616022 616331 -226908247 - AluSx SINE Alu -1 311 1 376 283 155 50 chr3 616331 616553 -226908025 - MER113 DNA MER1_type? -191 330 38 946 329 36 17 chr3 617122 617533 -226907045 - L3 LINE CR1 -213 1364 946 1607 178 52 0 chr3 617614 617900 -226906678 - AluJb SINE Alu -11 301 1 422 177 0 10 chr3 617922 618018 -226906560 + (TG)n Simple_repeat Simple_repeat 1 95 0 358 255 167 36 chr3 618219 618411 -226906167 + L2 LINE L2 3028 3244 -69 282 353 83 0 chr3 618462 618595 -226905983 + MER5A DNA MER1_type 46 189 0 1989 135 4 0 chr3 618663 618964 -226905614 + AluSx SINE Alu 1 302 0 229 216 14 14 chr3 619986 620060 -226904518 + GA-rich Low_complexity Low_complexity 2 75 0 243 364 54 27 chr3 620145 620329 -226904249 + MIR3 SINE MIR 19 207 -1 414 330 40 30 chr3 621263 621563 -226903015 - MER102b DNA MER1_type 0 341 39 182 255 0 43 chr3 623741 623788 -226900790 - L2 LINE L2 -11 3261 3217 660 294 89 5 chr3 623827 624041 -226900537 + MIR SINE MIR 14 245 -17 1920 146 0 4 chr3 626931 627212 -226897366 + AluSx SINE Alu 1 280 -32 362 21 21 0 chr3 627212 627259 -226897319 + (TAAAA)n Simple_repeat Simple_repeat 1 48 0 1920 144 3 3 chr3 628221 628505 -226896073 - AluSq SINE Alu -29 284 1 735 237 163 62 chr3 629269 629772 -226894806 - MLT1H1 LTR MaLR 0 555 2 263 288 25 0 chr3 629874 629965 -226894613 + MIR SINE MIR 84 147 -61 1066 124 0 0 chr3 629980 630125 -226894453 + FRAM SINE Alu 9 153 -23 505 304 196 22 chr3 631477 631839 -226892739 - L2 LINE L2 -2 3311 2887 333 325 88 53 chr3 632499 632782 -226891796 + L2 LINE L2 2623 2915 -399 280 297 68 27 chr3 633764 633912 -226890666 - MIR SINE MIR -73 189 36 21 0 0 0 chr3 634520 634541 -226890037 + AT_rich Low_complexity Low_complexity 1 21 0 222 250 33 0 chr3 634578 634638 -226889940 - MIR SINE MIR -27 235 174 33 56 0 0 chr3 634750 634804 -226889774 + AT_rich Low_complexity Low_complexity 1 54 0 186 267 0 67 chr3 634853 634898 -226889680 + L2 LINE L2 3164 3205 -67 2336 94 0 0 chr3 635287 635596 -226888982 + AluY SINE Alu 1 309 -2 803 243 66 22 chr3 635596 635822 -226888756 + MIR SINE MIR 22 257 -5 189 0 0 0 chr3 637952 637973 -226886605 + (TTTTC)n Simple_repeat Simple_repeat 5 25 0 400 77 31 0 chr3 639558 639623 -226884955 + (CA)n Simple_repeat Simple_repeat 2 68 0 703 270 47 9 chr3 639673 639884 -226884694 + MER20 DNA MER1_type 1 219 0 286 170 0 0 chr3 640168 640221 -226884357 - L1M4 LINE L1 -3779 2367 2315 2361 110 0 0 chr3 640239 640539 -226884039 - AluSx SINE Alu -12 300 1 280 322 34 34 chr3 640922 641071 -226883507 + L2 LINE L2 3164 3312 -1 1961 135 7 0 chr3 641125 641413 -226883165 - AluSx SINE Alu -22 290 1 2168 174 40 124 chr3 641496 641513 -226883065 + LTR8A LTR ERV1 34 51 -676 2022 183 53 12 chr3 641513 641924 -226882654 - MSTA LTR MaLR 0 428 1 2168 174 40 124 chr3 641924 642664 -226881914 + LTR8A LTR ERV1 51 727 0 208 250 29 15 chr3 642739 642807 -226881771 - MIR SINE MIR -64 198 130 792 233 26 48 chr3 643106 643376 -226881202 + MLT1D LTR MaLR 13 276 -229 258 284 69 9 chr3 643389 643505 -226881073 + MER34 LTR ERV1 11 133 -409 1001 227 108 31 chr3 643507 643945 -226880633 + LTR29 LTR ERV1 160 595 0 826 206 110 10 chr3 643945 644154 -226880424 + MLT1D LTR MaLR 276 505 0 2401 128 25 32 chr3 644952 645383 -226879195 - MER4E LTR ERV1 -8 771 344 344 344 50 17 chr3 645384 645564 -226879014 - L1ME LINE L1 -505 5616 5431 958 154 11 69 chr3 645569 645654 -226878924 - FAM SINE Alu -156 165 94 1111 94 5 80 chr3 645654 645855 -226878723 - MER30B DNA MER1_type -4 186 1 958 154 11 69 chr3 645855 645944 -226878634 - FAM SINE Alu -227 94 1 900 235 145 9 chr3 645970 646302 -226878276 - L1ME1 LINE L1 -8 6158 5782 248 246 40 48 chr3 646311 646406 -226878172 - L1M3 LINE L1 -729 5442 5347 4670 97 17 38 chr3 646406 647093 -226877485 - L1PA13 LINE L1 0 6163 5492 2266 71 7 23 chr3 647093 647401 -226877177 - AluY SINE Alu -8 303 1 4670 97 17 38 chr3 647401 647474 -226877104 - L1PA13 LINE L1 -671 5492 5419 248 246 40 48 chr3 647474 647504 -226877074 - L1M3 LINE L1 -824 5347 5318 350 303 212 32 chr3 648445 648947 -226875631 + L2 LINE L2 2703 3313 0 2878 153 70 23 chr3 650588 651203 -226873375 - L1MA6 LINE L1 -5 6295 5652 243 0 0 0 chr3 651282 651309 -226873269 + (TG)n Simple_repeat Simple_repeat 1 27 0 689 299 51 0 chr3 653040 653394 -226871184 - MER113 DNA MER1_type? -119 402 31 877 248 40 43 chr3 655691 656038 -226868540 + MLT1H1 LTR MaLR 208 553 -2 1524 84 14 0 chr3 656488 656701 -226867877 + L1PA5 LINE L1 5939 6154 0 27 0 0 0 chr3 656818 656845 -226867733 + AT_rich Low_complexity Low_complexity 1 27 0 296 252 19 37 chr3 658047 658154 -226866424 - MIR SINE MIR -46 216 112 1086 137 29 78 chr3 659580 659784 -226864794 - AluJo SINE Alu -83 229 36 2218 94 14 0 chr3 659794 660080 -226864498 - AluSx SINE Alu -21 291 2 349 270 67 79 chr3 660267 660443 -226864135 + MIR SINE MIR 12 185 -77 255 173 0 0 chr3 660587 660639 -226863939 + (CA)n Simple_repeat Simple_repeat 1 52 0 1755 184 0 34 chr3 660853 661174 -226863404 + AluJo SINE Alu 1 310 -2 195 294 73 46 chr3 661299 661408 -226863170 + MIR SINE MIR 95 206 -56 290 270 22 11 chr3 662390 662479 -226862099 + LTR33 LTR ERVL 27 116 -405 547 281 119 0 chr3 662535 662770 -226861808 + LTR33 LTR ERVL 222 484 -37 358 275 70 0 chr3 662891 663033 -226861545 - Charlie8 DNA MER1_type -2217 200 49 194 266 13 76 chr3 663307 663386 -226861192 + MIR SINE MIR 77 150 -112 442 257 88 70 chr3 663636 663807 -226860771 - MER5B DNA MER1_type -3 175 2 441 297 24 53 chr3 664035 664244 -226860334 - MIR SINE MIR -48 214 12 270 116 0 0 chr3 664734 664777 -226859801 + (CA)n Simple_repeat Simple_repeat 1 43 0 27 49 0 0 chr3 666637 666678 -226857900 + AT_rich Low_complexity Low_complexity 1 41 0 426 273 52 32 chr3 667648 667802 -226856776 - MIR SINE MIR -57 205 49 307 284 23 11 chr3 670960 671048 -226853530 - L2 LINE L2 -2 3311 3223 363 121 0 0 chr3 671325 671383 -226853195 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 29 0 0 0 chr3 672237 672266 -226852312 + AT_rich Low_complexity Low_complexity 1 29 0 261 330 113 19 chr3 672916 673022 -226851556 - MIR3 SINE MIR -27 181 66 21 0 0 0 chr3 673098 673119 -226851459 + AT_rich Low_complexity Low_complexity 1 21 0 1617 127 19 16 chr3 673364 673671 -226850907 - AluY SINE Alu -3 308 1 319 347 8 0 chr3 673688 673809 -226850769 + MLT1J LTR MaLR 77 198 -313 378 337 126 0 chr3 674246 674501 -226850077 + MLT1K LTR MaLR 151 437 -151 325 264 18 27 chr3 674730 674840 -226849738 + MER117 DNA MER1_type 6 114 -83 3744 143 17 6 chr3 675681 676316 -226848262 + L1PA16 LINE L1 5516 6157 -9 249 190 0 38 chr3 676840 676919 -226847659 + MER116 DNA Mariner 5 80 0 1920 160 0 0 chr3 677066 677374 -226847204 + AluSx SINE Alu 1 308 0 1664 267 67 45 chr3 677374 677721 -226846857 + L1ME LINE L1 66 404 -5676 1822 207 14 8 chr3 677721 678084 -226846494 + MLT1A1 LTR MaLR 1 365 0 1664 267 67 45 chr3 678084 678954 -226845624 + L1ME LINE L1 404 1309 -4771 2422 51 0 0 chr3 679017 679310 -226845268 - AluY SINE Alu -17 294 2 676 275 26 17 chr3 679310 679590 -226844988 + L1ME LINE L1 1413 1697 -4383 21 36 0 0 chr3 680675 680703 -226843875 + AT_rich Low_complexity Low_complexity 1 28 0 2248 85 10 7 chr3 683355 683660 -226840918 + AluY SINE Alu 1 306 -5 522 338 39 13 chr3 683966 684197 -226840381 - MIR SINE MIR -1 261 25 189 200 89 0 chr3 684296 684341 -226840237 + L2 LINE L2 3265 3313 0 236 320 119 21 chr3 684745 684939 -226839639 - L2 LINE L2 -1136 2178 1966 300 300 40 72 chr3 685062 685312 -226839266 - MIR SINE MIR 0 262 21 210 37 0 0 chr3 685678 685705 -226838873 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 1982 82 0 70 chr3 685778 685821 -226838757 - L1PA10 LINE L1 -11 6157 6113 180 0 0 0 chr3 685821 685841 -226838737 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1725 141 21 35 chr3 685841 686124 -226838454 - AluSg SINE Alu -31 279 1 1982 82 0 70 chr3 686124 686395 -226838183 - L1PA10 LINE L1 -53 6115 5864 916 243 13 26 chr3 686509 686735 -226837843 + MER58A DNA MER1_type 2 224 0 642 253 75 11 chr3 686941 687127 -226837451 + MLT1J2 LTR MaLR 39 236 -214 2149 155 13 28 chr3 687522 687916 -226836662 - MLT1B LTR MaLR -2 388 1 1752 182 18 3 chr3 688296 688636 -226835942 + MER7A DNA MER2_type 4 346 0 482 288 43 6 chr3 688872 689035 -226835543 - MIR SINE MIR -15 247 79 333 269 26 0 chr3 689368 689446 -226835132 - MER2 DNA MER2_type 0 345 266 2424 76 0 0 chr3 689461 689762 -226834816 - AluSc SINE Alu -8 301 1 1065 180 11 21 chr3 689762 689951 -226834627 - MER2 DNA MER2_type -158 187 1 470 234 11 4 chr3 692686 692963 -226831615 + (TA)n Simple_repeat Simple_repeat 1 279 0 2096 110 7 0 chr3 693959 694320 -226830258 + AluSq SINE Alu 1 363 0 1418 99 0 0 chr3 694320 694512 -226830066 + AluY SINE Alu 106 297 -14 283 271 59 42 chr3 694665 694783 -226829795 - MLT1K LTR MaLR -13 575 456 39 0 0 0 chr3 694828 694867 -226829711 + AT_rich Low_complexity Low_complexity 1 39 0 285 260 90 0 chr3 695032 695132 -226829446 - MIR SINE MIR -26 236 128 390 347 17 6 chr3 695720 695896 -226828682 - MIR SINE MIR -83 179 2 2171 162 7 55 chr3 696748 696911 -226827667 + Tigger2a DNA MER2_type 1 170 -2538 1886 147 0 42 chr3 696911 697224 -226827354 + AluSx SINE Alu 1 300 -12 2171 162 7 55 chr3 697224 697516 -226827062 + Tigger2a DNA MER2_type 170 434 0 257 262 0 0 chr3 698098 698193 -226826385 + (TG)n Simple_repeat Simple_repeat 1 95 0 1928 160 0 16 chr3 698309 698616 -226825962 + AluSx SINE Alu 1 302 -10 366 74 0 0 chr3 700228 700282 -226824296 + (TCCA)n Simple_repeat Simple_repeat 1 54 0 259 352 11 11 chr3 700287 700375 -226824203 - L2 LINE L2 -36 3277 3190 435 363 97 0 chr3 700628 700906 -226823672 - L2 LINE L2 -352 2962 2658 1005 280 53 51 chr3 701091 701866 -226822712 + L2 LINE L2 2542 3313 0 232 353 105 15 chr3 702023 702156 -226822422 - L2 LINE L2 0 3272 3128 1704 173 4 4 chr3 702492 702769 -226821809 + AluJo SINE Alu 2 278 -34 239 111 0 22 chr3 702773 702818 -226821760 + (GGAGAA)n Simple_repeat Simple_repeat 4 47 0 280 271 51 25 chr3 702949 703067 -226821511 + Charlie8 DNA MER1_type 368 488 -1929 1621 274 48 25 chr3 704043 704597 -226819981 + MLT1F1 LTR MaLR 1 567 0 212 317 20 20 chr3 704634 704735 -226819843 + MER5B DNA MER1_type 78 178 0 374 353 68 10 chr3 705375 705582 -226818996 + MIR SINE MIR 25 243 -19 234 329 40 79 chr3 706291 706519 -226818059 - L2 LINE L2 -48 3224 3006 339 255 98 0 chr3 707196 707298 -226817280 - MIR SINE MIR -136 126 15 568 187 90 15 chr3 708100 708234 -226816344 + L1MB2 LINE L1 6025 6168 -3 1496 207 18 3 chr3 708591 708876 -226815702 - AluJb SINE Alu -22 290 2 1723 155 14 47 chr3 709121 709417 -226815161 + AluJb SINE Alu 1 286 -26 201 94 0 0 chr3 709436 709468 -226815110 + (TAAAAA)n Simple_repeat Simple_repeat 4 35 0 686 307 77 25 chr3 710055 710420 -226814158 - LTR33 LTR ERVL -10 511 128 722 164 0 210 chr3 710425 710580 -226813998 - MER5A DNA MER1_type 0 189 100 897 143 0 8 chr3 710580 710713 -226813865 - FLAM_C SINE Alu 0 133 2 722 164 0 210 chr3 710713 710795 -226813783 - MER5A DNA MER1_type -89 100 2 259 273 16 62 chr3 710804 710932 -226813646 - LTR33 LTR ERVL -399 122 1 737 261 6 6 chr3 711432 711612 -226812966 + MER5A DNA MER1_type 10 189 0 330 247 31 31 chr3 711619 711716 -226812862 - MER5B DNA MER1_type 0 178 82 393 222 11 11 chr3 711765 711855 -226812723 + MLT1H LTR MaLR 73 162 -387 216 381 41 41 chr3 712012 712159 -226812419 + L2 LINE L2 3117 3263 -9 1198 130 0 0 chr3 713937 714114 -226810464 - AluSg/x SINE Alu -3 309 133 264 224 35 0 chr3 714274 714332 -226810246 + AluJ/FLAM SINE Alu 1 60 -242 377 278 17 9 chr3 715851 715966 -226808612 + L2 LINE L2 3190 3305 -8 479 351 52 12 chr3 716399 716647 -226807931 - MIR SINE MIR 0 262 5 201 242 15 30 chr3 717154 717220 -226807358 + GA-rich Low_complexity Low_complexity 4 68 0 831 186 6 27 chr3 718753 718936 -226805642 + MER96B DNA MER1_type? 1 179 -238 876 216 52 28 chr3 721019 721232 -226803346 + MER20 DNA MER1_type 2 219 0 232 353 39 0 chr3 721289 721391 -226803187 + L2 LINE L2 3167 3272 0 404 261 164 48 chr3 721792 721899 -226802679 - MER113 DNA MER1_type? -116 405 312 2202 117 7 0 chr3 721899 722208 -226802370 - AluSx SINE Alu -1 311 1 404 261 164 48 chr3 722208 722430 -226802148 - MER113 DNA MER1_type? -209 312 38 946 329 36 17 chr3 722999 723410 -226801168 - L3 LINE CR1 -213 1364 946 1615 178 52 0 chr3 723491 723778 -226800800 - AluJb SINE Alu -10 302 1 401 188 0 10 chr3 723800 723896 -226800682 + (TG)n Simple_repeat Simple_repeat 1 95 0 352 267 168 31 chr3 724097 724288 -226800290 + L2 LINE L2 3028 3244 -69 282 353 83 0 chr3 724339 724472 -226800106 + MER5A DNA MER1_type 46 189 0 1989 135 4 0 chr3 724540 724841 -226799737 + AluSx SINE Alu 1 302 0 23 78 0 0 chr3 727792 727843 -226796735 + AT_rich Low_complexity Low_complexity 1 51 0 362 326 23 0 chr3 727972 728101 -226796477 + MER103 DNA DNA 24 155 -11 272 400 22 22 chr3 729923 730058 -226794520 - L2 LINE L2 -4 3268 3134 195 322 164 0 chr3 730298 730450 -226794128 - L2 LINE L2 -400 2914 2738 26474 129 9 5 chr3 731125 736383 -226788195 - L1PA7 LINE L1 -1 6468 1189 988 155 23 5 chr3 736490 736681 -226787897 + AluSq SINE Alu 66 218 -95 1821 142 7 23 chr3 736965 737267 -226787311 - AluSx SINE Alu -15 297 1 1879 171 97 8 chr3 737515 737906 -226786672 + MSTB LTR MaLR 1 426 0 272 89 0 22 chr3 739016 739061 -226785517 + (GAAAA)n Simple_repeat Simple_repeat 2 45 0 22 0 0 0 chr3 739425 739447 -226785131 + AT_rich Low_complexity Low_complexity 1 22 0 1256 140 0 0 chr3 739523 739702 -226784876 - AluSg/x SINE Alu -2 310 132 270 294 76 11 chr3 739802 739894 -226784684 - L2 LINE L2 0 3272 3175 1799 252 21 14 chr3 740061 740493 -226784085 - MER82 DNA MER2_type -7 646 212 428 82 0 0 chr3 740494 740555 -226784023 + Alu SINE Alu 243 303 -9 900 215 19 10 chr3 740790 740999 -226783579 - MER82 DNA MER2_type -433 220 10 260 77 0 0 chr3 741059 741098 -226783480 + MADE1 DNA Mariner 42 80 0 2252 106 0 7 chr3 742419 742722 -226781856 + AluSx SINE Alu 1 301 -11 374 308 43 0 chr3 743130 743247 -226781331 - L2 LINE L2 -7 3265 3144 35 54 0 0 chr3 743247 743303 -226781275 + AT_rich Low_complexity Low_complexity 1 56 0 3630 99 25 2 chr3 743335 743851 -226780727 + MER41B LTR ERV1 1 528 -107 2011 154 0 0 chr3 743858 744156 -226780422 - AluSx SINE Alu -12 300 3 277 337 70 30 chr3 744421 744851 -226779727 + L1ME LINE L1 5370 5816 -346 243 0 0 0 chr3 745748 745775 -226778803 + (T)n Simple_repeat Simple_repeat 1 27 0 264 306 72 0 chr3 746249 746360 -226778218 - L2 LINE L2 -6 3307 3189 736 225 7 7 chr3 746575 746751 -226777827 - AluJb SINE Alu 0 310 135 1717 190 40 54 chr3 746753 746833 -226777745 - L1MB7 LINE L1 -10 6174 6094 718 217 0 0 chr3 746833 746962 -226777616 - FLAM_A SINE Alu -1 132 4 1717 190 40 54 chr3 746962 747360 -226777218 - L1MB7 LINE L1 -90 6094 5703 403 327 92 9 chr3 748549 748766 -226775812 - MIR SINE MIR -3 259 25 215 305 180 8 chr3 749220 749348 -226775230 + L2 LINE L2 3160 3309 -4 990 196 0 0 chr3 751148 751321 -226773257 - AluJb SINE Alu -5 307 135 243 264 36 82 chr3 752001 752111 -226772467 + MLT1K LTR MaLR 462 566 -22 194 152 0 22 chr3 753306 753352 -226771226 + GA-rich Low_complexity Low_complexity 2 46 0 336 154 0 0 chr3 753466 753518 -226771060 + L2 LINE L2 3261 3312 -1 1794 175 0 3 chr3 754071 754362 -226770216 - AluJb SINE Alu -22 290 1 22 35 0 0 chr3 755891 755920 -226768658 + AT_rich Low_complexity Low_complexity 1 29 0 234 150 0 0 chr3 755956 755996 -226768582 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 1563 241 43 108 chr3 756029 756587 -226767991 - MLT1F1 LTR MaLR 0 567 24 805 115 0 0 chr3 756603 756749 -226767829 + AluSg/x SINE Alu 177 322 0 237 180 20 0 chr3 757154 757204 -226767374 - MLT1I LTR MaLR -1 408 358 611 306 97 12 chr3 757257 757505 -226767073 - MLT1I LTR MaLR -140 269 1 2016 186 3 3 chr3 757971 758336 -226766242 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr3 759380 759402 -226765176 + AT_rich Low_complexity Low_complexity 1 22 0 242 312 37 37 chr3 761545 761654 -226762924 + MIR SINE MIR 59 167 -95 41 98 0 0 chr3 762676 762808 -226761770 + AT_rich Low_complexity Low_complexity 1 132 0 602 177 39 31 chr3 762998 763128 -226761450 + FLAM_C SINE Alu 1 131 -2 255 285 228 13 chr3 763132 763290 -226761288 - MIR SINE MIR -43 219 28 215 204 0 0 chr3 763570 763614 -226760964 + (TG)n Simple_repeat Simple_repeat 2 45 0 259 320 33 40 chr3 763875 764025 -226760553 + L2 LINE L2 3164 3312 -1 1737 174 7 0 chr3 764079 764367 -226760211 - AluSx SINE Alu -22 290 1 823 132 0 76 chr3 764370 764514 -226760064 - AluSq/x SINE Alu -179 133 1 214 132 38 0 chr3 764556 764609 -226759969 + (TA)n Simple_repeat Simple_repeat 1 55 0 24 0 0 0 chr3 764609 764633 -226759945 + AT_rich Low_complexity Low_complexity 1 24 0 2058 105 10 27 chr3 764633 764928 -226759650 - AluSx SINE Alu -22 290 1 234 206 0 0 chr3 766136 766199 -226758379 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 225 0 0 0 chr3 766660 766685 -226757893 + (CA)n Simple_repeat Simple_repeat 2 26 0 184 370 19 37 chr3 768740 768848 -226755730 + MIR SINE MIR 34 139 -123 22 0 0 0 chr3 769415 769437 -226755141 + AT_rich Low_complexity Low_complexity 1 22 0 2275 120 3 0 chr3 769749 770058 -226754520 - AluSx SINE Alu -2 310 1 533 261 72 26 chr3 771755 772061 -226752517 - L1ME4a LINE L1 -111 6010 5691 327 191 0 0 chr3 772358 772426 -226752152 + (TATG)n Simple_repeat Simple_repeat 2 69 0 189 200 67 50 chr3 772964 773024 -226751554 + L2 LINE L2 3252 3312 -1 213 39 0 0 chr3 773168 773194 -226751384 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1234 0 7 0 chr3 773198 773337 -226751241 - L1PA2 LINE L1 -13 6142 6003 602 198 39 82 chr3 773482 773664 -226750914 + MIR SINE MIR 78 251 -11 322 156 104 0 chr3 774378 774455 -226750123 - MIR SINE MIR -114 148 64 207 183 100 17 chr3 774457 774517 -226750061 - L2 LINE L2 0 3272 3208 221 333 48 67 chr3 775051 775216 -226749362 - MIR3 SINE MIR -9 199 38 1855 135 63 44 chr3 775265 775629 -226748949 + THE1C LTR MaLR 1 371 -4 304 393 61 9 chr3 775753 775982 -226748596 + MIR SINE MIR 14 254 -8 2190 107 9 25 chr3 776824 777142 -226747436 + AluSq SINE Alu 1 313 0 301 338 79 12 chr3 777395 777616 -226746962 - MIR SINE MIR -20 242 6 35 0 0 0 chr3 777767 777802 -226746776 + AT_rich Low_complexity Low_complexity 1 35 0 6036 140 14 5 chr3 777802 779187 -226745391 - L1PB1 LINE L1 -8 6143 4745 195 129 0 0 chr3 780357 780388 -226744190 + (TATATG)n Simple_repeat Simple_repeat 2 32 0 2305 71 0 0 chr3 780496 780812 -226743766 + AluY SINE Alu 1 316 0 204 97 0 0 chr3 780849 780880 -226743698 + (CA)n Simple_repeat Simple_repeat 2 32 0 195 360 67 20 chr3 783484 783634 -226740944 + MIR SINE MIR 79 235 -27 783 172 30 24 chr3 786640 786809 -226737769 - L1MA10 LINE L1 -2 6332 6163 1110 248 22 101 chr3 788056 788156 -226736422 - MER34 LTR ERV1 -4 538 432 1751 159 11 0 chr3 788156 788426 -226736152 - AluJo SINE Alu -19 293 21 1110 248 22 101 chr3 788426 788909 -226735669 - MER34 LTR ERV1 -110 432 1 369 309 119 66 chr3 789084 789327 -226735251 - L2 LINE L2 -3 3269 3014 298 364 43 7 chr3 789494 789634 -226734944 + MIR SINE MIR 22 166 -96 524 248 16 23 chr3 789681 789810 -226734768 + MIR3 SINE MIR 74 201 -7 360 0 0 0 chr3 790543 790583 -226733995 + (TA)n Simple_repeat Simple_repeat 2 41 0 392 297 77 32 chr3 791168 791323 -226733255 + MIR SINE MIR 12 173 -89 371 284 76 56 chr3 791793 791990 -226732588 + L2 LINE L2 3113 3313 0 231 286 254 8 chr3 792086 792212 -226732366 - MIR SINE MIR -10 252 96 636 255 99 28 chr3 792222 792434 -226732144 + LTR16A LTR ERVL 16 242 -208 188 258 61 15 chr3 792689 792755 -226731823 - L2 LINE L2 -456 2858 2790 1160 196 57 75 chr3 792756 793128 -226731450 - MLT1A1 LTR MaLR 0 365 1 826 230 52 28 chr3 794644 794857 -226729721 + MER20 DNA MER1_type 2 219 0 211 363 39 0 chr3 794914 795016 -226729562 + L2 LINE L2 3167 3272 0 376 283 155 50 chr3 795309 795524 -226729054 - MER113 DNA MER1_type? 0 521 330 2223 113 7 0 chr3 795524 795833 -226728745 - AluSx SINE Alu -1 311 1 376 283 155 50 chr3 795833 796055 -226728523 - MER113 DNA MER1_type? -191 330 38 946 329 36 17 chr3 796624 797035 -226727543 - L3 LINE CR1 -213 1364 946 1607 178 52 0 chr3 797116 797402 -226727176 - AluJb SINE Alu -11 301 1 422 177 0 10 chr3 797424 797520 -226727058 + (TG)n Simple_repeat Simple_repeat 1 95 0 352 267 168 31 chr3 797721 797912 -226726666 + L2 LINE L2 3028 3244 -69 282 353 83 0 chr3 797963 798096 -226726482 + MER5A DNA MER1_type 46 189 0 1989 135 4 0 chr3 798164 798465 -226726113 + AluSx SINE Alu 1 302 0 229 216 14 14 chr3 799487 799561 -226725017 + GA-rich Low_complexity Low_complexity 2 75 0 243 364 54 27 chr3 799646 799830 -226724748 + MIR3 SINE MIR 19 207 -1 414 330 40 30 chr3 800629 800929 -226723649 - MER102b DNA MER1_type 0 341 39 182 255 0 43 chr3 803108 803155 -226721423 - L2 LINE L2 -11 3261 3217 660 294 89 5 chr3 803194 803408 -226721170 + MIR SINE MIR 14 245 -17 1920 146 0 4 chr3 806298 806579 -226717999 + AluSx SINE Alu 1 280 -32 362 21 21 0 chr3 806579 806626 -226717952 + (TAAAA)n Simple_repeat Simple_repeat 1 48 0 1920 144 3 3 chr3 807588 807872 -226716706 - AluSq SINE Alu -29 284 1 735 237 163 62 chr3 808636 809139 -226715439 - MLT1H1 LTR MaLR 0 555 2 263 288 25 0 chr3 809241 809332 -226715246 + MIR SINE MIR 84 147 -61 1066 124 0 0 chr3 809347 809492 -226715086 + FRAM SINE Alu 9 153 -23 505 304 196 22 chr3 810844 811206 -226713372 - L2 LINE L2 -2 3311 2887 333 325 88 53 chr3 811866 812149 -226712429 + L2 LINE L2 2623 2915 -399 280 297 68 27 chr3 813131 813279 -226711299 - MIR SINE MIR -73 189 36 21 0 0 0 chr3 813887 813908 -226710670 + AT_rich Low_complexity Low_complexity 1 21 0 222 250 33 0 chr3 813945 814005 -226710573 - MIR SINE MIR -27 235 174 33 56 0 0 chr3 814117 814171 -226710407 + AT_rich Low_complexity Low_complexity 1 54 0 186 267 0 67 chr3 814220 814265 -226710313 + L2 LINE L2 3164 3205 -67 2336 94 0 0 chr3 814654 814963 -226709615 + AluY SINE Alu 1 309 -2 803 243 66 22 chr3 814963 815189 -226709389 + MIR SINE MIR 22 257 -5 189 0 0 0 chr3 817319 817340 -226707238 + (TTTTC)n Simple_repeat Simple_repeat 5 25 0 400 77 31 0 chr3 818925 818990 -226705588 + (CA)n Simple_repeat Simple_repeat 2 68 0 771 270 47 9 chr3 819040 819251 -226705327 + MER20 DNA MER1_type 1 219 0 931 282 78 54 chr3 819531 819606 -226704972 - L1MEc LINE L1 -3921 2475 2403 2318 113 0 0 chr3 819606 819906 -226704672 - AluSx SINE Alu -12 300 1 931 282 78 54 chr3 819906 820735 -226703843 - L1MEc LINE L1 -3993 2403 1549 527 221 29 0 chr3 820735 820839 -226703739 - U6 snRNA snRNA 0 107 1 201 147 0 0 chr3 821548 821582 -226702996 + (TCTA)n Simple_repeat Simple_repeat 2 35 0 525 229 52 81 chr3 821696 821906 -226702672 - MER20 DNA MER1_type -15 204 1 510 287 145 18 chr3 822059 822341 -226702237 - L2 LINE L2 0 3313 2996 505 278 126 36 chr3 823562 823785 -226700793 + MIR SINE MIR 7 249 -13 4283 105 21 10 chr3 824258 824375 -226700203 - MER41B LTR ERV1 0 635 521 2374 102 0 6 chr3 824375 824688 -226699890 + AluSx SINE Alu 1 311 -1 4283 105 21 10 chr3 824688 825198 -226699380 - MER41B LTR ERV1 -114 521 1 35 54 0 0 chr3 825230 825286 -226699292 + AT_rich Low_complexity Low_complexity 1 56 0 374 308 43 0 chr3 825286 825403 -226699175 + L2 LINE L2 3144 3265 -7 2252 106 0 7 chr3 825811 826114 -226698464 - AluSx SINE Alu -11 301 1 260 77 0 0 chr3 827435 827474 -226697104 - MADE1 DNA Mariner 0 80 42 1006 191 19 10 chr3 827534 827743 -226696835 + MER82 DNA MER2_type 10 220 -433 428 82 0 0 chr3 827978 828039 -226696539 - Alu SINE Alu -9 302 242 1805 254 21 14 chr3 828040 828477 -226696101 + MER82 DNA MER2_type 212 651 -2 270 294 76 11 chr3 828639 828731 -226695847 + L2 LINE L2 3175 3272 0 1256 140 0 0 chr3 828831 829010 -226695568 + AluSg/x SINE Alu 130 308 -2 22 0 0 0 chr3 829086 829108 -226695470 + AT_rich Low_complexity Low_complexity 1 22 0 272 89 0 22 chr3 829472 829517 -226695061 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 1879 171 97 8 chr3 830627 831018 -226693560 - MSTB LTR MaLR 0 426 1 1821 142 7 23 chr3 831266 831568 -226693010 + AluSx SINE Alu 1 297 -15 229 54 0 0 chr3 831852 831889 -226692689 - AluSq SINE Alu -4 295 259 1074 154 6 6 chr3 831890 832059 -226692519 - AluSq SINE Alu -95 218 50 1803 168 0 3 chr3 832083 832374 -226692204 + AluJb SINE Alu 1 290 -22 336 154 0 0 chr3 832927 832979 -226691599 - L2 LINE L2 -1 3312 3261 194 152 0 22 chr3 833093 833139 -226691439 + CT-rich Low_complexity Low_complexity 2 46 0 243 264 36 82 chr3 834334 834444 -226690134 - MLT1K LTR MaLR -22 566 462 990 196 0 0 chr3 835124 835297 -226689281 + AluJb SINE Alu 135 307 -5 220 295 209 8 chr3 837097 837226 -226687352 - L2 LINE L2 -4 3309 3155 271 400 22 22 chr3 838602 838737 -226685841 - L2 LINE L2 -4 3268 3134 192 322 164 0 chr3 838977 839129 -226685449 - L2 LINE L2 -400 2914 2738 16224 94 11 7 chr3 839798 842961 -226681617 - L1PA7 LINE L1 -1 6153 2978 220 189 44 22 chr3 843685 843775 -226680803 + (TA)n Simple_repeat Simple_repeat 2 93 0 24 67 0 0 chr3 843889 843934 -226680644 + AT_rich Low_complexity Low_complexity 1 45 0 283 210 65 0 chr3 846570 846708 -226677870 + (TA)n Simple_repeat Simple_repeat 2 148 0 1235 216 61 22 chr3 847414 847861 -226676717 - AluJo SINE Alu 0 458 1 871 206 79 14 chr3 848209 848423 -226676155 + AluJo SINE Alu 1 228 -84 3789 175 36 1 chr3 848623 849362 -226675216 - L1MC1 LINE L1 -9 6324 5560 482 261 36 12 chr3 849482 849647 -226674931 - MER20B DNA MER1_type -604 179 11 397 199 0 3 chr3 849772 849871 -226674707 + L1ME3 LINE L1 6066 6163 -1 213 39 0 0 chr3 852344 852370 -226672208 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 453 36 0 0 chr3 852369 852424 -226672154 + (TA)n Simple_repeat Simple_repeat 2 56 0 877 261 123 64 chr3 852480 852993 -226671585 - MLT1H LTR MaLR -6 543 1 192 277 213 19 chr3 853243 853398 -226671180 - MIR SINE MIR -65 197 13 3191 130 74 42 chr3 853809 854402 -226670176 - LTR9 LTR ERV1 0 612 1 386 103 176 0 chr3 854427 854495 -226670083 + MADE1 DNA Mariner 1 80 0 976 110 65 0 chr3 854688 854843 -226669735 + L1MA3 LINE L1 6141 6305 0 1215 148 10 5 chr3 857004 857206 -226667372 + L1PA16 LINE L1 5784 5986 -180 1146 171 9 14 chr3 857231 857447 -226667131 + L1PA16 LINE L1 5951 6165 -1 186 43 0 0 chr3 857645 857668 -226666910 + (A)n Simple_repeat Simple_repeat 1 23 0 930 231 0 0 chr3 858595 858768 -226665810 + FAM SINE Alu 1 173 -2 253 347 13 13 chr3 859065 859215 -226665363 + MER113 DNA MER1_type? 336 485 -36 193 347 137 0 chr3 859233 859328 -226665250 - L3 LINE CR1 -23 1554 1447 22 56 0 0 chr3 860351 860387 -226664191 + AT_rich Low_complexity Low_complexity 1 36 0 624 248 7 7 chr3 860433 860578 -226664000 + Charlie1a DNA MER1_type 9 153 -1302 1262 160 106 13 chr3 860580 860684 -226663894 + AluJo SINE Alu 1 94 -218 356 55 18 0 chr3 860684 860739 -226663839 + (TA)n Simple_repeat Simple_repeat 1 56 0 1262 160 106 13 chr3 860739 860871 -226663707 + AluJo SINE Alu 94 259 -53 2659 222 113 35 chr3 860871 861787 -226662791 + Charlie1a DNA MER1_type 191 1178 -277 760 188 0 14 chr3 861788 861932 -226662646 + FRAM SINE Alu 20 161 -15 794 197 89 37 chr3 861935 862204 -226662374 + Charlie1a DNA MER1_type 1168 1450 -5 241 250 83 0 chr3 862207 862279 -226662299 - MIR3 SINE MIR -46 162 85 279 0 0 0 chr3 862657 862688 -226661890 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 447 218 0 0 chr3 862692 862779 -226661799 - AluJ SINE Alu -26 286 200 762 196 0 14 chr3 862786 862929 -226661649 - AluJ SINE Alu -171 141 1 30 0 0 0 chr3 863689 863719 -226660859 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 864614 864642 -226659936 + AT_rich Low_complexity Low_complexity 1 28 0 323 310 115 19 chr3 865418 865731 -226658847 + L1ME4a LINE L1 5514 5856 -265 36 0 0 0 chr3 865941 865977 -226658601 + AT_rich Low_complexity Low_complexity 1 36 0 219 320 80 40 chr3 866538 866663 -226657915 + MIR SINE MIR 59 188 -74 450 254 0 51 chr3 866877 866995 -226657583 - MLT1I LTR MaLR -213 196 85 278 258 0 0 chr3 867600 867666 -226656912 + GA-rich Low_complexity Low_complexity 3 68 0 297 331 7 0 chr3 867727 867872 -226656706 + L1ME LINE L1 2217 2362 -3784 442 290 59 5 chr3 867918 868139 -226656439 + L1ME LINE L1 2473 2705 -3441 718 230 33 53 chr3 868183 868544 -226656034 + L1ME LINE L1 2795 3148 -2998 350 290 82 51 chr3 868543 868957 -226655621 + L1ME LINE L1 4419 4845 -1301 * 186 103 0 0 chr3 868992 869021 -226655557 + (TC)n Simple_repeat Simple_repeat 2 30 0 232 315 22 0 chr3 869041 869133 -226655445 + L1ME LINE L1 4918 5011 -1135 1512 174 0 78 chr3 869214 869248 -226655330 - AluJo SINE Alu -2 310 275 279 0 0 0 chr3 869248 869279 -226655299 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1512 174 0 78 chr3 869279 869578 -226655000 - AluJo SINE Alu -37 275 3 309 337 70 30 chr3 869843 870273 -226654305 + L1ME LINE L1 5370 5816 -346 23 0 0 0 chr3 871161 871184 -226653394 + AT_rich Low_complexity Low_complexity 1 23 0 265 306 72 0 chr3 871658 871769 -226652809 - L2 LINE L2 -6 3307 3189 198 0 0 0 chr3 871984 872006 -226652572 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 929 184 0 0 chr3 872009 872161 -226652417 - AluJb SINE Alu -26 286 135 1780 190 40 52 chr3 872163 872242 -226652336 - L1MB7 LINE L1 -10 6174 6096 710 217 0 0 chr3 872242 872371 -226652207 - FLAM_A SINE Alu -1 132 4 1780 190 40 52 chr3 872371 872769 -226651809 - L1MB7 LINE L1 -88 6096 5703 443 324 97 8 chr3 873963 874201 -226650377 - MIR SINE MIR -3 259 1 2135 49 0 28 chr3 875219 875418 -226649160 - AluY SINE Alu -2 309 119 5149 52 12 12 chr3 875418 876085 -226648493 - L1PA5 LINE L1 -13 6141 5475 2135 49 0 28 chr3 876085 876169 -226648409 - AluY SINE Alu -192 119 34 30 27 0 0 chr3 876360 876397 -226648181 + AT_rich Low_complexity Low_complexity 1 37 0 23 78 0 0 chr3 881247 881298 -226643280 + AT_rich Low_complexity Low_complexity 1 51 0 361 333 23 0 chr3 881427 881556 -226643022 + MER103 DNA DNA 24 155 -11 27 0 0 0 chr3 882377 882404 -226642174 + AT_rich Low_complexity Low_complexity 1 27 0 216 0 0 0 chr3 882505 882529 -226642049 + (CA)n Simple_repeat Simple_repeat 2 25 0 21 57 0 0 chr3 882836 882871 -226641707 + AT_rich Low_complexity Low_complexity 1 35 0 715 203 0 0 chr3 882902 883025 -226641553 + FRAM SINE Alu 22 144 -32 208 51 26 26 chr3 883025 883064 -226641514 + (TAAAA)n Simple_repeat Simple_repeat 1 39 0 1868 146 0 0 chr3 883480 883821 -226640757 - AluY SINE Alu 0 341 1 208 305 84 11 chr3 886247 886342 -226638236 + MIR SINE MIR 63 164 -98 21 57 0 0 chr3 887358 887393 -226637185 + AT_rich Low_complexity Low_complexity 1 35 0 189 350 41 16 chr3 887977 888100 -226636478 + MIR3 SINE MIR 75 200 -8 246 330 30 20 chr3 891057 891157 -226633421 + MIR3 SINE MIR 81 181 -27 27 29 0 0 chr3 892223 892257 -226632321 + AT_rich Low_complexity Low_complexity 1 34 0 252 59 0 0 chr3 892465 892499 -226632079 + (CA)n Simple_repeat Simple_repeat 2 35 0 29 47 0 0 chr3 893026 893069 -226631509 + AT_rich Low_complexity Low_complexity 1 43 0 226 328 0 0 chr3 893179 893246 -226631332 + Zaphod DNA AcHobo 1 67 -3964 509 286 128 17 chr3 893377 893667 -226630911 + MER115 DNA AcHobo 370 691 -2 230 352 28 0 chr3 893680 893788 -226630790 + MIR SINE MIR 40 150 -112 766 231 55 39 chr3 893850 894105 -226630473 + MIR SINE MIR 4 262 0 200 231 58 0 chr3 894381 894433 -226630145 - MIR SINE MIR -77 185 131 * 636 277 190 34 chr3 894431 895124 -226629454 - L2 LINE L2 0 3313 2498 212 351 72 9 chr3 895115 895226 -226629352 - MIR SINE MIR -68 140 23 * 321 309 123 25 chr3 895442 895604 -226628974 - MIR SINE MIR -54 208 31 1733 206 65 54 chr3 896085 896581 -226627997 - MLT1D LTR MaLR 0 505 5 286 331 32 16 chr3 896629 896753 -226627825 - L2 LINE L2 -6 3266 3141 379 115 57 8 chr3 896992 897114 -226627464 + (TA)n Simple_repeat Simple_repeat 1 128 0 225 359 58 6 chr3 897173 897329 -226627249 + MIR SINE MIR 99 262 0 1954 146 19 10 chr3 897332 897641 -226626937 - AluSx SINE Alu 0 312 1 4242 20 0 2 chr3 898629 899125 -226625453 - L1PA2 LINE L1 -1 6154 5660 3730 18 0 0 chr3 899125 899567 -226625011 + L1P LINE L1 4857 5298 -848 831 186 6 27 chr3 900442 900625 -226623953 - MER96B DNA MER1_type? -238 179 1 201 242 15 30 chr3 902158 902224 -226622354 + CT-rich Low_complexity Low_complexity 4 68 0 479 351 52 12 chr3 902731 902979 -226621599 + MIR SINE MIR 5 262 0 377 278 17 9 chr3 903412 903527 -226621051 - L2 LINE L2 -8 3305 3190 2212 121 0 0 chr3 904227 904524 -226620054 + AluSx SINE Alu 1 297 -15 527 298 13 77 chr3 905391 905626 -226618952 + MIR SINE MIR 15 234 -28 1275 142 0 10 chr3 905703 905907 -226618671 - L1PA8A LINE L1 -3 6443 6242 26104 138 9 17 chr3 905909 912092 -226612486 - L1PA8A LINE L1 -250 6196 2 475 299 137 10 chr3 913704 913901 -226610677 - MIR SINE MIR -10 252 31 328 327 9 0 chr3 914178 914288 -226610290 + MLT1I LTR MaLR 281 391 -18 277 348 106 12 chr3 914341 914502 -226610076 - MER5A DNA MER1_type -13 176 1 263 382 21 21 chr3 915382 915526 -226609052 - MER5A DNA MER1_type -44 145 2 303 306 104 22 chr3 916583 916717 -226607861 + LTR33 LTR ERVL 3 147 -374 22 0 0 0 chr3 917795 917817 -226606761 + AT_rich Low_complexity Low_complexity 1 22 0 353 345 76 29 chr3 919041 919212 -226605366 - MER5A DNA MER1_type -3 186 8 4494 155 20 27 chr3 919350 920135 -226604443 - LTR39 LTR ERV1 -2 781 2 26 0 0 0 chr3 921518 921544 -226603034 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr3 922184 922206 -226602372 + AT_rich Low_complexity Low_complexity 1 22 0 183 376 56 16 chr3 922361 922486 -226602092 - MIR SINE MIR -76 186 57 2226 124 0 0 chr3 923586 923884 -226600694 + AluSg SINE Alu 1 298 -12 1126 146 34 0 chr3 924859 925065 -226599513 + L1MA8 LINE L1 6067 6279 -12 25 0 0 0 chr3 925570 925595 -226598983 + AT_rich Low_complexity Low_complexity 1 25 0 2348 92 3 6 chr3 926304 926618 -226597960 + AluSp SINE Alu 1 313 0 180 244 133 33 chr3 927255 927345 -226597233 + L3 LINE CR1 1051 1149 -428 199 300 38 12 chr3 927575 927655 -226596923 - L2 LINE L2 -5 3308 3227 437 214 161 0 chr3 928283 928395 -226596183 + MIR SINE MIR 133 262 0 2038 132 10 16 chr3 929271 929574 -226595004 + AluSx SINE Alu 1 301 -11 22 0 0 0 chr3 929634 929656 -226594922 + AT_rich Low_complexity Low_complexity 1 22 0 868 270 23 0 chr3 929967 930182 -226594396 + MER58A DNA MER1_type 1 220 -4 271 353 131 18 chr3 930871 931029 -226593549 - MIR SINE MIR -10 252 61 2140 55 0 0 chr3 931029 931286 -226593292 + AluY SINE Alu 40 296 -15 271 353 131 18 chr3 931286 931348 -226593230 - MIR SINE MIR -201 61 7 32 0 0 0 chr3 931593 931625 -226592953 + AT_rich Low_complexity Low_complexity 1 32 0 309 322 29 41 chr3 931735 931906 -226592672 - L1 LINE L1 -1854 4292 4124 260 214 95 24 chr3 931969 932053 -226592525 + MIR SINE MIR 30 119 -89 195 387 13 0 chr3 932136 932211 -226592367 + L2 LINE L2 3182 3257 -15 376 267 112 64 chr3 932425 932612 -226591966 + MIR SINE MIR 2 197 -65 454 108 12 48 chr3 933730 933813 -226590765 - MADE1 DNA Mariner 0 80 1 24 0 0 0 chr3 935375 935399 -226589179 + AT_rich Low_complexity Low_complexity 1 24 0 2314 89 7 3 chr3 937399 937701 -226586877 + AluSq SINE Alu 2 304 -9 1155 126 11 0 chr3 938688 938862 -226585716 + AluSg/x SINE Alu 131 306 -6 1749 199 0 0 chr3 938939 939240 -226585338 - AluSx SINE Alu -11 301 1 22 35 0 0 chr3 940769 940798 -226583780 + AT_rich Low_complexity Low_complexity 1 29 0 255 125 0 0 chr3 940834 940874 -226583704 + (GAAA)n Simple_repeat Simple_repeat 4 43 0 1576 239 43 108 chr3 940907 941465 -226583113 - MLT1F1 LTR MaLR 0 567 24 822 113 0 0 chr3 941481 941587 -226582991 + AluSg/x SINE Alu 177 282 -28 195 114 0 0 chr3 941592 941627 -226582951 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 237 180 20 0 chr3 942032 942082 -226582496 - MLT1I LTR MaLR -1 408 358 600 311 97 12 chr3 942135 942383 -226582195 - MLT1I LTR MaLR -140 269 1 2004 189 3 3 chr3 942849 943214 -226581364 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr3 944258 944280 -226580298 + AT_rich Low_complexity Low_complexity 1 22 0 252 312 37 37 chr3 946424 946533 -226578045 + MIR SINE MIR 59 167 -95 54 84 0 0 chr3 947555 947686 -226576892 + AT_rich Low_complexity Low_complexity 1 131 0 615 177 39 23 chr3 947876 948006 -226576572 + FLAM_C SINE Alu 1 132 -1 251 316 221 6 chr3 948010 948168 -226576410 - MIR SINE MIR -43 219 28 792 354 116 27 chr3 949148 949854 -226574724 + L2 LINE L2 2112 2880 -434 279 282 68 61 chr3 950212 950375 -226574203 + LTR16C LTR ERVL 326 489 -2 355 383 19 13 chr3 950597 950751 -226573827 + L2 LINE L2 3118 3272 0 1050 293 137 19 chr3 950820 951666 -226572912 + L2 LINE L2 2355 3312 -1 21 57 0 0 chr3 952064 952099 -226572479 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 952176 952198 -226572380 + AT_rich Low_complexity Low_complexity 1 22 0 236 275 0 14 chr3 952786 952855 -226571723 + MIR SINE MIR 174 241 -21 574 274 104 0 chr3 953123 953287 -226571291 - MER5A DNA MER1_type -8 181 1 324 0 0 0 chr3 954845 954881 -226569697 + (CA)n Simple_repeat Simple_repeat 1 36 0 3262 159 17 22 chr3 955842 956426 -226568152 + L1PA16 LINE L1 5493 6073 -93 614 254 122 0 chr3 956822 957019 -226567559 + MER58A DNA MER1_type 2 222 -2 657 290 106 5 chr3 958251 958468 -226566110 + MIR SINE MIR 8 246 -16 306 258 68 79 chr3 958621 958811 -226565767 + MLT1L LTR MaLR 207 394 -221 23 54 0 0 chr3 959137 959174 -226565404 + AT_rich Low_complexity Low_complexity 1 37 0 1645 154 10 61 chr3 959401 959713 -226564865 + AluSq SINE Alu 1 296 -17 680 165 31 16 chr3 960151 960278 -226564300 + FLAM_C SINE Alu 1 129 -4 561 287 59 31 chr3 960887 961201 -226563377 + MLT1I LTR MaLR 56 405 -4 356 350 85 0 chr3 961228 961428 -226563150 + L2 LINE L2 1753 1969 -1345 566 310 78 52 chr3 961428 961815 -226562763 + L2 LINE L2 2576 2972 -342 1471 267 95 40 chr3 961863 962358 -226562220 + MLT1E LTR MaLR 35 556 -37 190 346 51 0 chr3 962419 962497 -226562081 + L2 LINE L2 2992 3073 -240 225 263 126 53 chr3 962555 962650 -226561928 + MLT1J LTR MaLR 1 102 -409 266 315 117 9 chr3 962650 962761 -226561817 + MIR SINE MIR 140 262 0 189 200 140 0 chr3 962941 962991 -226561587 - L2 LINE L2 -8 3264 3208 468 290 58 0 chr3 963473 963611 -226560967 - MIR SINE MIR -17 245 100 717 223 38 0 chr3 964711 964868 -226559710 + MER3 DNA MER1_type 37 199 -10 241 304 88 35 chr3 967474 967645 -226556933 - MLT1L LTR MaLR -229 386 207 449 302 23 0 chr3 967675 967804 -226556774 - MLT1L LTR MaLR -353 262 131 377 270 0 11 chr3 967911 968000 -226556578 - MER2 DNA MER2_type -250 95 8 893 313 79 25 chr3 969070 969502 -226555076 + LTR16B LTR ERVL 8 462 -2 21 0 0 0 chr3 969545 969566 -226555012 + AT_rich Low_complexity Low_complexity 1 21 0 551 321 71 35 chr3 969581 970032 -226554546 - L1MC4a LINE L1 -1969 5839 5373 193 246 98 0 chr3 971330 971391 -226553187 - MIR SINE MIR -27 235 169 856 262 81 89 chr3 971413 971806 -226552772 + LTR16B LTR ERVL 1 390 -74 421 101 0 38 chr3 971812 971891 -226552687 + (TTTC)n Simple_repeat Simple_repeat 1 76 0 314 285 16 41 chr3 971921 971958 -226552620 + LTR16B LTR ERVL 345 381 -83 1772 148 0 0 chr3 971958 972222 -226552356 - AluSx SINE Alu -44 268 5 314 285 16 41 chr3 972222 972307 -226552271 + LTR16B LTR ERVL 381 464 0 724 303 133 39 chr3 972647 973129 -226551449 + MLT1H LTR MaLR 18 544 -5 823 306 144 13 chr3 973157 973690 -226550888 + MLT1L LTR MaLR 1 603 -12 21 0 0 0 chr3 973968 973989 -226550589 + AT_rich Low_complexity Low_complexity 1 21 0 377 216 216 8 chr3 975562 975696 -226548882 + MLT1H LTR MaLR 1 162 -387 321 293 79 43 chr3 975868 976121 -226548457 + MLT1H LTR MaLR 294 555 0 4862 120 3 0 chr3 976959 977676 -226546902 + L1PA11 LINE L1 5455 6173 -1 323 67 0 0 chr3 977983 978028 -226546550 - MLT2A1 LTR ERVL -10 434 390 378 267 0 0 chr3 978029 978119 -226546459 - L1MC4 LINE L1 -1339 6703 6614 279 173 0 0 chr3 978121 978173 -226546405 + (CA)n Simple_repeat Simple_repeat 2 53 0 862 65 0 0 chr3 978174 978281 -226546297 - HERVL LTR ERVL -1239 4415 4309 319 86 69 26 chr3 978281 978397 -226546181 + (TA)n Simple_repeat Simple_repeat 1 121 0 2797 86 35 15 chr3 978397 978794 -226545784 - MLT2A1 LTR ERVL -39 405 1 33023 73 6 12 chr3 978794 984474 -226540104 - HERVL-A1-A1 LTR ERVL 0 5654 1 3240 71 40 0 chr3 984477 984902 -226539676 - MLT2A1 LTR ERVL -2 442 1 180 111 0 0 chr3 985003 985030 -226539548 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 1375 168 50 42 chr3 985562 985824 -226538754 + AluJb SINE Alu 1 264 -48 603 86 19 9 chr3 987130 987235 -226537343 + (TA)n Simple_repeat Simple_repeat 1 106 0 24 67 0 0 chr3 987264 987309 -226537269 + AT_rich Low_complexity Low_complexity 1 45 0 809 243 0 0 chr3 987309 987461 -226537117 + AluJb SINE Alu 129 280 -32 1969 149 39 3 chr3 987517 987852 -226536726 - MER7A DNA MER2_type 0 346 2 486 266 65 26 chr3 988505 988659 -226535919 - MIR SINE MIR 0 262 103 258 210 60 60 chr3 989708 989808 -226534770 + MIR SINE MIR 100 199 -63 230 295 162 0 chr3 990031 990136 -226534442 - MIR SINE MIR -101 161 40 387 152 27 18 chr3 990642 990754 -226533824 + MER96B DNA MER1_type? 66 178 -239 270 183 0 0 chr3 990886 990957 -226533621 + (TA)n Simple_repeat Simple_repeat 1 71 0 296 284 0 0 chr3 990965 991046 -226533532 + MER96B DNA MER1_type? 330 410 -7 562 306 38 16 chr3 991211 991397 -226533181 - MIR SINE MIR -69 193 4 1687 198 18 3 chr3 991850 992189 -226532389 - MER2 DNA MER2_type 0 344 1 2102 141 3 0 chr3 992189 992487 -226532091 - AluSx SINE Alu -13 299 1 218 281 83 0 chr3 993463 993559 -226531019 + MIR SINE MIR 110 213 -49 469 113 0 0 chr3 993685 993747 -226530831 + AluSg/x SINE Alu 217 278 -34 210 336 97 9 chr3 994125 994238 -226530340 + L2 LINE L2 3190 3312 -1 1612 162 0 35 chr3 995582 995866 -226528712 + AluJo SINE Alu 6 279 -33 22 0 0 0 chr3 998452 998474 -226526104 + AT_rich Low_complexity Low_complexity 1 22 0 592 271 52 29 chr3 998721 998931 -226525647 + LTR33 LTR ERVL 6 220 -301 1366 273 112 12 chr3 999023 999532 -226525046 - MLT1G1 LTR MaLR 0 595 36 274 270 11 11 chr3 999604 999693 -226524885 + LTR33 LTR ERVL 433 521 0 1058 240 78 18 chr3 1000768 1001152 -226523426 - LTR50 LTR ERVL -3 792 386 255 211 42 0 chr3 1001283 1001354 -226523224 + (TCTA)n Simple_repeat Simple_repeat 1 74 0 332 326 0 36 chr3 1001558 1001696 -226522882 - MIR SINE MIR -12 250 118 266 217 42 192 chr3 1001808 1001928 -226522650 - MER91A DNA MER1_type -5 191 90 621 339 12 0 chr3 1001935 1002100 -226522478 - MER91A DNA MER1_type -28 168 2 1064 244 94 77 chr3 1002250 1002656 -226521922 - MLT1F LTR MaLR -3 539 123 2161 109 0 32 chr3 1002656 1002967 -226521611 - AluSg SINE Alu -9 301 1 1064 244 94 77 chr3 1002967 1003015 -226521563 - MLT1F LTR MaLR -419 123 77 21 0 0 0 chr3 1003208 1003229 -226521349 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 1003852 1003873 -226520705 + AT_rich Low_complexity Low_complexity 1 21 0 300 91 0 0 chr3 1005388 1005432 -226519146 + (TTTA)n Simple_repeat Simple_repeat 1 44 0 334 274 37 44 chr3 1005463 1005598 -226518980 + MER117 DNA MER1_type 64 197 0 2002 153 132 5 chr3 1005626 1006004 -226518574 - MSTA LTR MaLR -1 427 2 228 359 11 22 chr3 1006066 1006158 -226518420 + MER5B DNA MER1_type 88 178 0 22 0 0 0 chr3 1006184 1006206 -226518372 + AT_rich Low_complexity Low_complexity 1 22 0 749 129 0 0 chr3 1006209 1006325 -226518253 - L1MA2 LINE L1 -9 6295 6180 750 165 8 0 chr3 1006890 1007011 -226517567 - FLAM_C SINE Alu -11 122 1 357 93 0 0 chr3 1007029 1007083 -226517495 + (TG)n Simple_repeat Simple_repeat 1 54 0 204 308 0 0 chr3 1007120 1007172 -226517406 + CT-rich Low_complexity Low_complexity 3 54 0 207 69 0 0 chr3 1007174 1007203 -226517375 + (CA)n Simple_repeat Simple_repeat 1 29 0 2158 169 54 7 chr3 1007938 1008346 -226516232 + MSTA LTR MaLR 1 427 -1 6375 186 132 9 chr3 1008351 1009754 -226514824 + MSTA-int LTR MaLR 5 1580 0 2137 152 53 22 chr3 1009754 1010129 -226514449 + MSTA LTR MaLR 1 392 -36 2003 131 0 29 chr3 1010129 1010443 -226514135 - AluSg SINE Alu -5 305 1 2137 152 53 22 chr3 1010443 1010482 -226514096 + MSTA LTR MaLR 392 428 0 1497 182 7 107 chr3 1010482 1010895 -226513683 - MLT1B LTR MaLR -16 374 3 2811 207 23 58 chr3 1011076 1011824 -226512754 - MER72 LTR ERV1 0 722 1 237 250 25 0 chr3 1011867 1011947 -226512631 - HsTC2 DNA Tc2 -2 1896 1815 329 335 30 6 chr3 1012094 1012261 -226512317 + L1MEd LINE L1 447 617 -5502 946 236 38 5 chr3 1012384 1012596 -226511982 + MER58A DNA MER1_type 6 224 0 573 278 25 6 chr3 1012601 1012763 -226511815 - MIR SINE MIR -56 206 42 243 87 87 22 chr3 1012818 1012864 -226511714 + L2 LINE L2 3265 3313 0 264 250 0 42 chr3 1012878 1012950 -226511628 - MIR SINE MIR -176 86 18 2331 64 0 32 chr3 1013412 1013725 -226510853 - AluY SINE Alu -8 303 1 351 206 14 14 chr3 1013933 1014006 -226510572 - MIR SINE MIR -188 74 2 282 369 27 0 chr3 1014455 1014604 -226509974 + L2 LINE L2 2053 2205 -1109 440 295 7 40 chr3 1014953 1015102 -226509476 - MER5B DNA MER1_type -34 144 1 592 199 46 8 chr3 1015528 1015659 -226508919 - MER20 DNA MER1_type -21 198 63 495 197 120 0 chr3 1015659 1015776 -226508802 + FLAM_A SINE Alu 11 141 -1 319 278 139 56 chr3 1015965 1016309 -226508269 + MLT1H LTR MaLR 108 491 -58 7267 121 9 10 chr3 1016309 1018211 -226506367 + L1PA8A LINE L1 4220 6129 -2 319 278 139 56 chr3 1018211 1018262 -226506316 + MLT1H LTR MaLR 491 536 -13 766 255 91 26 chr3 1018488 1018719 -226505859 - MIR SINE MIR -14 248 3 1174 203 28 46 chr3 1020124 1020450 -226504128 + MER33 DNA MER1_type 5 324 0 1028 178 26 4 chr3 1020652 1020916 -226503662 + AluSx SINE Alu 1 270 -42 286 161 69 0 chr3 1020918 1021005 -226503573 + AluSg/x SINE Alu 176 268 -32 286 161 69 0 chr3 1021007 1021094 -226503484 + AluSg/x SINE Alu 176 268 -32 290 149 69 0 chr3 1021096 1021183 -226503395 + AluSg/x SINE Alu 176 268 -32 340 138 69 0 chr3 1021185 1021272 -226503306 + AluSg/x SINE Alu 176 268 -32 290 149 69 0 chr3 1021274 1021361 -226503217 + AluSg/x SINE Alu 178 270 -32 329 138 69 0 chr3 1021363 1021450 -226503128 + AluSg/x SINE Alu 176 268 -32 290 149 69 0 chr3 1021452 1021539 -226503039 + AluSg/x SINE Alu 176 268 -32 329 149 64 0 chr3 1021541 1021635 -226502943 + AluSg/x SINE Alu 176 275 -25 23 0 0 0 chr3 1021654 1021677 -226502901 + GC_rich Low_complexity Low_complexity 1 23 0 356 288 83 51 chr3 1021854 1022093 -226502485 - MIR SINE MIR -6 256 8 523 320 115 4 chr3 1022746 1022980 -226501598 - MIR SINE MIR -2 260 1 2158 91 0 10 chr3 1023752 1024061 -226500517 - L1PA13 LINE L1 -2 6161 5856 319 247 213 20 chr3 1024612 1024762 -226499816 - MER5A DNA MER1_type 0 189 11 1139 330 52 7 chr3 1024792 1025379 -226499199 + L2 LINE L2 2459 3070 -243 705 270 107 67 chr3 1025381 1025966 -226498612 - MLT1G1 LTR MaLR 0 595 1 384 247 190 17 chr3 1025987 1026161 -226498417 + L2 LINE L2 3106 3309 -4 186 297 0 16 chr3 1026226 1026290 -226498288 + MIR SINE MIR 187 249 -13 403 267 0 0 chr3 1026578 1026668 -226497910 + MIR SINE MIR 101 190 -72 2049 181 8 3 chr3 1026717 1027088 -226497490 + MER93b LTR ERV1 1 373 0 213 160 217 19 chr3 1027524 1027630 -226496948 + MIR SINE MIR 125 251 -11 1530 157 91 49 chr3 1028019 1028369 -226496209 - MLT1A1 LTR MaLR 0 365 1 450 125 0 0 chr3 1029168 1029265 -226495313 + AluS SINE Alu 220 316 0 993 185 29 0 chr3 1029759 1029964 -226494614 + MER2 DNA MER2_type 1 211 -134 407 284 107 57 chr3 1031020 1031405 -226493173 + MLT1J1 LTR MaLR 1 417 -29 302 273 27 55 chr3 1031454 1031564 -226493014 - MIR SINE MIR -31 231 125 720 233 57 5 chr3 1032722 1032915 -226491663 - MER3 DNA MER1_type -2 207 5 1094 204 33 49 chr3 1032927 1033199 -226491379 + MER33 DNA MER1_type 1 269 -2316 2001 148 0 0 chr3 1033199 1033497 -226491081 - AluSx SINE Alu -14 298 1 1094 204 33 49 chr3 1033497 1033553 -226491025 + MER33 DNA MER1_type 269 324 0 1173 275 88 10 chr3 1033589 1033975 -226490603 - LTR65 LTR ERV1 -29 640 225 232 280 56 19 chr3 1034443 1034550 -226490028 + L2 LINE L2 3201 3311 -2 682 262 27 22 chr3 1035569 1035752 -226488826 - MER5A DNA MER1_type -3 186 3 307 237 237 0 chr3 1036012 1036105 -226488473 - L2 LINE L2 0 3313 3199 819 268 107 53 chr3 1036120 1036643 -226487935 - MLT1H1 LTR MaLR -2 553 3 699 250 109 0 chr3 1036880 1037064 -226487514 - MIR SINE MIR -1 261 58 29 70 0 0 chr3 1039217 1039274 -226485304 + AT_rich Low_complexity Low_complexity 1 57 0 180 152 0 0 chr3 1039338 1039371 -226485207 + (TAA)n Simple_repeat Simple_repeat 3 35 0 305 289 11 0 chr3 1039493 1039583 -226484995 - L1MC4 LINE L1 -1339 6703 6613 402 243 0 18 chr3 1089854 1089973 -226434605 - MER69 DNA AcHobo -57 2469 8 202 322 52 26 chr3 1089982 1090097 -226434481 - MIR3 SINE MIR -54 154 37 554 189 71 53 chr3 1090122 1090403 -226434175 + pTR5 LTR ERV1 743 1028 -1410 1768 108 7 54 chr3 1090482 1090778 -226433800 + LTR12 LTR ERV1 1 282 -432 257 274 0 0 chr3 1090780 1090853 -226433725 + LTR30 LTR ERV1 552 624 -98 700 179 14 4 chr3 1090853 1091013 -226433565 + pTR5 LTR ERV1 49 316 -2122 535 136 0 5 chr3 1091013 1091113 -226433465 - L1M3 LINE L1 -352 5816 5720 621 139 32 9 chr3 1091126 1091232 -226433346 + LTR12 LTR ERV1 410 651 -63 6743 147 46 2 chr3 1091665 1092384 -226432194 + Tigger3b DNA MER2_type 1 794 -2234 2127 124 3 0 chr3 1092384 1092682 -226431896 - AluSx SINE Alu -13 299 1 6743 147 46 2 chr3 1092682 1093141 -226431437 + Tigger3b DNA MER2_type 794 1231 0 21 0 0 0 chr3 1093141 1093162 -226431416 + AT_rich Low_complexity Low_complexity 1 21 0 759 247 70 29 chr3 1093274 1093599 -226430979 - LTR33A LTR ERVL 0 523 149 265 343 102 0 chr3 1093662 1093799 -226430779 + MARNA DNA Mariner 70 220 -366 234 336 58 19 chr3 1094148 1094252 -226430326 - MIR SINE MIR -8 254 147 1553 186 16 19 chr3 1094257 1094568 -226430010 - AluJb SINE Alu -2 310 1 588 21 105 0 chr3 1094610 1094753 -226429825 + (TA)n Simple_repeat Simple_repeat 2 159 0 231 271 104 0 chr3 1094947 1095043 -226429535 + L1ME3A LINE L1 6035 6140 -30 24 0 0 0 chr3 1095178 1095202 -226429376 + AT_rich Low_complexity Low_complexity 1 24 0 242 273 0 0 chr3 1095659 1095714 -226428864 + L2 LINE L2 3257 3311 -2 2144 105 3 3 chr3 1096751 1097047 -226427531 + AluSc SINE Alu 1 296 -13 22579 43 5 4 chr3 1097382 1100825 -226423753 - L1PA5 LINE L1 -140 6014 2570 8688 91 11 12 chr3 1101441 1101777 -226422801 - L1P3 LINE L1 -337 5817 5482 2336 102 7 0 chr3 1101777 1102082 -226422496 - AluSg SINE Alu -3 307 1 8688 91 11 12 chr3 1102082 1103452 -226421126 - L1P3 LINE L1 -672 5482 4110 362 251 117 64 chr3 1105019 1105190 -226419388 + L3 LINE CR1 1077 1256 -321 279 0 0 0 chr3 1105406 1105437 -226419141 + (CA)n Simple_repeat Simple_repeat 2 32 0 189 336 133 8 chr3 1105854 1105982 -226418596 + L2 LINE L2 3170 3313 0 239 203 29 14 chr3 1106000 1106069 -226418509 + GA-rich Low_complexity Low_complexity 3 72 0 313 318 16 8 chr3 1106206 1106335 -226418243 - MIR SINE MIR -10 252 123 239 202 0 43 chr3 1109058 1109152 -226415426 + CT-rich Low_complexity Low_complexity 4 93 0 2056 115 7 3 chr3 1109378 1109674 -226414904 + AluSq SINE Alu 1 297 -16 315 195 131 22 chr3 1110463 1110638 -226413940 + L1M4 LINE L1 5237 5426 -743 6120 214 48 16 chr3 1110667 1111421 -226413157 - L1MB3 LINE L1 -3 6416 5688 2754 88 3 0 chr3 1111421 1111784 -226412794 - THE1B LTR MaLR 0 364 1 6120 214 48 16 chr3 1111784 1113456 -226411122 - L1MB3 LINE L1 -731 5688 3909 4666 179 55 50 chr3 1113450 1114240 -226410338 - L1MB3 LINE L1 -5065 1319 535 * 2675 22 0 13 chr3 1114240 1114555 -226410023 + AluYa5 SINE Alu 1 311 0 4666 179 55 50 chr3 1114555 1114735 -226409843 - L1MB3 LINE L1 -5849 535 340 243 0 0 0 chr3 1114735 1114762 -226409816 + (TTG)n Simple_repeat Simple_repeat 2 28 0 4666 179 55 50 chr3 1114762 1114919 -226409659 - L1MB3 LINE L1 -6044 340 185 1873 147 31 0 chr3 1115190 1115476 -226409102 + AluSx SINE Alu 1 295 -17 315 71 0 0 chr3 1115479 1115521 -226409057 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 22 0 0 0 chr3 1116070 1116092 -226408486 + AT_rich Low_complexity Low_complexity 1 22 0 205 277 20 0 chr3 1116092 1116193 -226408385 + (TA)n Simple_repeat Simple_repeat 1 103 0 569 300 94 9 chr3 1116278 1116511 -226408067 + MIR SINE MIR 9 261 -1 355 244 13 0 chr3 1117471 1117549 -226407029 - MER117 DNA MER1_type -45 152 74 884 200 31 20 chr3 1118370 1118565 -226406013 - MER20 DNA MER1_type 0 219 23 228 333 0 0 chr3 1118569 1118629 -226405949 - MER20 DNA MER1_type -159 60 1 224 290 14 0 chr3 1118836 1118905 -226405673 + (TAG)n Simple_repeat Simple_repeat 1 70 0 255 250 0 42 chr3 1118918 1118990 -226405588 - MIR SINE MIR -76 186 118 203 204 19 0 chr3 1119896 1119950 -226404628 + (TA)n Simple_repeat Simple_repeat 1 55 0 336 306 57 0 chr3 1119997 1120121 -226404457 + MIR SINE MIR 100 230 -32 185 400 0 18 chr3 1122627 1122737 -226401841 + MIR3 SINE MIR 92 199 -9 544 209 52 33 chr3 1122918 1123071 -226401507 - MER103 DNA DNA -1 165 10 476 300 81 37 chr3 1123082 1123545 -226401033 + LTR33 LTR ERVL 8 521 0 225 333 11 33 chr3 1123855 1123945 -226400633 - L2 LINE L2 -10 3262 3175 619 315 22 26 chr3 1124017 1124249 -226400329 - MIR SINE MIR -1 261 31 1284 175 0 9 chr3 1124476 1124704 -226399874 + L1PA16 LINE L1 5683 5908 -258 979 182 35 5 chr3 1124805 1125008 -226399570 + L1PA16 LINE L1 5941 6149 -17 37 23 0 0 chr3 1125011 1125055 -226399523 + AT_rich Low_complexity Low_complexity 1 44 0 25 75 0 0 chr3 1126586 1126639 -226397939 + AT_rich Low_complexity Low_complexity 1 53 0 594 99 0 0 chr3 1126855 1126946 -226397632 + (TC)n Simple_repeat Simple_repeat 1 91 0 24 0 0 0 chr3 1127134 1127158 -226397420 + AT_rich Low_complexity Low_complexity 1 24 0 378 0 0 0 chr3 1127181 1127223 -226397355 + (CA)n Simple_repeat Simple_repeat 2 43 0 245 182 0 0 chr3 1127842 1127886 -226396692 - L2 LINE L2 0 3313 3270 238 269 9 46 chr3 1128563 1128671 -226395907 - MER103 DNA DNA -55 111 8 1020 239 31 82 chr3 1129040 1129429 -226395149 - MLT1A2 LTR MaLR -5 369 1 386 283 51 36 chr3 1129768 1129906 -226394672 - L2 LINE L2 0 3272 3133 330 355 106 43 chr3 1131485 1132151 -226392427 + L2 LINE L2 2560 3255 -17 208 239 11 34 chr3 1132153 1132241 -226392337 + (TA)n Simple_repeat Simple_repeat 2 87 0 317 261 0 33 chr3 1132243 1132335 -226392243 - L1MC4 LINE L1 -1340 6702 6614 36 77 0 0 chr3 1132335 1132413 -226392165 + AT_rich Low_complexity Low_complexity 1 78 0 2504 134 41 24 chr3 1132430 1132849 -226391729 + MSTB1 LTR MaLR 7 432 0 2007 110 3 14 chr3 1134372 1134679 -226389899 - AluSx SINE Alu 0 306 3 704 243 14 43 chr3 1135055 1135309 -226389269 + L1MC5 LINE L1 6573 6830 -1007 1426 174 9 0 chr3 1135312 1135536 -226389042 + AluSq SINE Alu 3 228 -85 404 230 101 14 chr3 1135711 1135859 -226388719 + L1MC5 LINE L1 7028 7188 -773 206 32 32 0 chr3 1135983 1136014 -226388564 + (CA)n Simple_repeat Simple_repeat 1 32 0 1006 248 56 55 chr3 1136081 1136173 -226388405 + L1MC5 LINE L1 7287 7377 -584 210 37 0 0 chr3 1136173 1136200 -226388378 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1006 248 56 55 chr3 1136200 1136471 -226388107 + L1MC5 LINE L1 7377 7646 -315 2284 89 14 0 chr3 1136471 1136763 -226387815 + AluSc SINE Alu 1 296 -13 1006 248 56 55 chr3 1136763 1137036 -226387542 + L1MC5 LINE L1 7646 7925 -36 1755 235 28 11 chr3 1137258 1137717 -226386861 - MLT1C LTR MaLR 0 467 1 273 29 0 0 chr3 1137867 1137901 -226386677 + (CAT)n Simple_repeat Simple_repeat 2 35 0 219 264 31 70 chr3 1138229 1138358 -226386220 + MIR SINE MIR 136 259 -3 25 0 0 0 chr3 1138650 1138675 -226385903 + AT_rich Low_complexity Low_complexity 1 25 0 325 313 223 18 chr3 1138749 1138915 -226385663 + MIR SINE MIR 15 214 -48 201 323 175 21 chr3 1139170 1139359 -226385219 + L2 LINE L2 2831 3048 -224 276 137 0 0 chr3 1139499 1139550 -226385028 + (TGAA)n Simple_repeat Simple_repeat 2 52 0 1786 260 46 8 chr3 1140953 1141538 -226383040 + L1 LINE L1 2273 2879 -3267 2463 152 7 7 chr3 1141538 1141972 -226382606 + L1MB1 LINE L1 5733 6166 -2 1955 131 7 0 chr3 1142036 1142353 -226382225 + AluSx SINE Alu 1 319 0 384 306 58 67 chr3 1144284 1144614 -226379964 + Charlie8 DNA MER1_type 211 537 -1880 354 294 108 37 chr3 1144895 1145134 -226379444 - MIR SINE MIR -3 259 6 505 222 0 0 chr3 1146139 1146229 -226378349 + MER45A DNA AcHobo 89 178 0 219 367 33 22 chr3 1146229 1146319 -226378259 + MER91A DNA MER1_type 103 193 -3 222 0 79 0 chr3 1149221 1149259 -226375319 + (TA)n Simple_repeat Simple_repeat 1 41 0 196 411 78 17 chr3 1149387 1149567 -226375011 + L2 LINE L2 2553 2743 -571 183 222 0 0 chr3 1149567 1149612 -226374966 + (TA)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr3 1149748 1149770 -226374808 + AT_rich Low_complexity Low_complexity 1 22 0 321 310 159 31 chr3 1149885 1150111 -226374467 + MIR SINE MIR 5 259 -3 1737 168 3 7 chr3 1150371 1150662 -226373916 - AluJb SINE Alu -16 296 7 265 301 12 0 chr3 1151483 1151566 -226373012 - L1MC4 LINE L1 -1340 6702 6619 1076 233 166 14 chr3 1151568 1151912 -226372666 + MSTD LTR MaLR 1 396 0 6554 239 62 20 chr3 1151918 1153578 -226371000 + MSTD-int LTR MaLR 6 1735 0 717 194 70 47 chr3 1153578 1153882 -226370696 + MSTD LTR MaLR 1 311 -54 1676 145 11 0 chr3 1153882 1154151 -226370427 + L1PA16 LINE L1 5886 6157 -9 245 238 0 16 chr3 1154178 1154241 -226370337 + MSTD LTR MaLR 304 365 0 674 236 72 24 chr3 1154817 1155025 -226369553 - MER20 DNA MER1_type -1 218 1 297 0 0 0 chr3 1156382 1156415 -226368163 + (TG)n Simple_repeat Simple_repeat 2 34 0 285 310 9 9 chr3 1157672 1157785 -226366793 + MLT1L LTR MaLR 503 615 0 400 182 10 10 chr3 1159743 1159842 -226364736 + CT-rich Low_complexity Low_complexity 2 100 0 446 181 14 199 chr3 1159959 1160251 -226364327 + LTR38B LTR ERV1 1 238 -372 365 219 35 84 chr3 1160380 1160658 -226363920 + LTR38B LTR ERV1 291 598 0 21 36 0 0 chr3 1161403 1161431 -226363147 + AT_rich Low_complexity Low_complexity 1 28 0 309 360 33 93 chr3 1162348 1162681 -226361897 + L2 LINE L2 2960 3272 0 249 250 104 0 chr3 1163047 1163143 -226361435 + MLT1I LTR MaLR 42 147 -262 390 42 0 0 chr3 1164529 1164577 -226360001 + (TG)n Simple_repeat Simple_repeat 1 48 0 1636 259 75 19 chr3 1164662 1165194 -226359384 + MLT1F1 LTR MaLR 3 564 -3 232 241 96 24 chr3 1165207 1165290 -226359288 - MIR SINE MIR -57 205 117 304 320 109 57 chr3 1165336 1165814 -226358764 - MLT1J LTR MaLR -6 505 3 287 324 150 19 chr3 1166938 1167151 -226357427 + HAL1 LINE L1 1684 1924 -583 287 240 58 58 chr3 1167464 1167618 -226356960 + HAL1b LINE L1 746 899 -449 274 328 44 59 chr3 1167766 1167901 -226356677 + L2 LINE L2 2880 3015 -298 1389 41 6 0 chr3 1167901 1168070 -226356508 - L1PA3 LINE L1 -1 6154 5985 274 328 44 59 chr3 1168070 1168275 -226356303 + L2 LINE L2 3015 3215 -98 24 0 0 0 chr3 1168328 1168352 -226356226 + AT_rich Low_complexity Low_complexity 1 24 0 1899 145 92 3 chr3 1168381 1168739 -226355839 + MLT1B LTR MaLR 1 390 0 222 37 0 0 chr3 1168851 1168878 -226355700 + (A)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr3 1169776 1169798 -226354780 + AT_rich Low_complexity Low_complexity 1 22 0 2484 144 64 7 chr3 1170040 1170476 -226354102 + LOR1b LTR ERV1 1 461 0 362 368 123 19 chr3 1170682 1171098 -226353480 + L2 LINE L2 2264 2722 -592 209 125 0 42 chr3 1171120 1171168 -226353410 + (TATG)n Simple_repeat Simple_repeat 3 48 0 229 342 26 0 chr3 1172048 1172124 -226352454 + L2 LINE L2 2993 3070 -202 225 341 49 0 chr3 1172238 1172320 -226352258 + L2 LINE L2 3227 3312 -1 364 230 34 32 chr3 1172416 1172524 -226352054 - MLT1H LTR MaLR 0 549 433 622 240 27 68 chr3 1172616 1172837 -226351741 - MLT1H LTR MaLR -243 306 95 1712 227 55 49 chr3 1174100 1174593 -226349985 + MLT1D LTR MaLR 5 500 -5 22 35 0 0 chr3 1174650 1174679 -226349899 + AT_rich Low_complexity Low_complexity 1 29 0 551 183 24 0 chr3 1174729 1174855 -226349723 - L1MC4 LINE L1 0 8042 7914 282 263 13 13 chr3 1175014 1175090 -226349488 - MER5C DNA MER1_type -248 76 1 953 112 149 0 chr3 1175127 1175288 -226349290 - MSTA LTR MaLR 0 428 244 424 167 42 0 chr3 1175283 1175355 -226349223 - MSTA LTR MaLR -353 75 1 * 232 309 85 0 chr3 1175483 1175577 -226349001 + L2 LINE L2 3200 3301 -12 2256 118 3 0 chr3 1177594 1177900 -226346678 - AluSq SINE Alu -6 307 1 513 280 60 30 chr3 1178410 1178642 -226345936 - MIR SINE MIR -8 254 16 183 250 0 0 chr3 1179494 1179530 -226345048 + MIR SINE MIR 226 261 -1 481 252 109 7 chr3 1180052 1180199 -226344379 + MIR SINE MIR 15 176 -86 241 296 0 37 chr3 1180703 1180784 -226343794 + MIR SINE MIR 180 257 -5 206 241 0 0 chr3 1180810 1180864 -226343714 + (TA)n Simple_repeat Simple_repeat 2 55 0 2233 77 0 10 chr3 1181466 1181786 -226342792 - AluY SINE Alu 0 311 1 26 30 0 0 chr3 1182025 1182058 -226342520 + AT_rich Low_complexity Low_complexity 1 33 0 345 47 0 0 chr3 1182199 1182242 -226342336 + (TCTG)n Simple_repeat Simple_repeat 2 44 0 23 33 0 0 chr3 1182413 1182443 -226342135 + AT_rich Low_complexity Low_complexity 1 30 0 17784 43 5 3 chr3 1183435 1185664 -226338914 - L1P LINE L1 -3386 2760 529 24 0 0 0 chr3 1185836 1185860 -226338718 + AT_rich Low_complexity Low_complexity 1 24 0 199 273 0 18 chr3 1187603 1187658 -226336920 - L2 LINE L2 -9 3263 3210 2186 92 0 32 chr3 1188632 1188947 -226335631 - AluSx SINE Alu -7 305 1 848 105 7 14 chr3 1189874 1190017 -226334561 - L1PA13 LINE L1 0 6163 6022 388 352 54 37 chr3 1191084 1191436 -226333142 + L2 LINE L2 2312 2669 -645 2899 236 50 4 chr3 1191532 1192248 -226332330 + L1MD2 LINE L1 5390 6138 -221 271 260 39 0 chr3 1192268 1192345 -226332233 + L1MD3 LINE L1 7786 7865 -130 435 332 143 28 chr3 1193682 1193984 -226330594 + L2 LINE L2 2737 3070 -243 742 254 55 15 chr3 1193995 1194196 -226330382 - MER63A DNA MER1_type -1 209 1 307 313 0 0 chr3 1194322 1194402 -226330176 + L2 LINE L2 3234 3313 0 247 229 184 23 chr3 1196736 1196955 -226327623 - Charlie7 DNA MER1_type 0 2612 6 180 152 0 0 chr3 1197388 1197421 -226327157 + (TTA)n Simple_repeat Simple_repeat 2 34 0 872 283 14 0 chr3 1197481 1197700 -226326878 - MER58A DNA MER1_type 0 224 3 1735 178 23 26 chr3 1197779 1198127 -226326451 + MER7A DNA MER2_type 1 345 -1 1255 190 107 33 chr3 1198270 1198607 -226325971 + MLT1A1 LTR MaLR 4 365 0 46 54 0 0 chr3 1199185 1199259 -226325319 + AT_rich Low_complexity Low_complexity 1 74 0 449 350 31 20 chr3 1199841 1200095 -226324483 + MLT1H1 LTR MaLR 1 257 -298 22 80 0 0 chr3 1200460 1200510 -226324068 + AT_rich Low_complexity Low_complexity 1 50 0 359 219 109 8 chr3 1201527 1201655 -226322923 + MER103 DNA DNA 11 151 -15 221 376 12 0 chr3 1201689 1201774 -226322804 + L2 LINE L2 3224 3309 -4 428 341 18 66 chr3 1202275 1202501 -226322077 - MIR SINE MIR -30 232 18 1128 275 28 19 chr3 1202986 1203346 -226321232 - L2 LINE L2 -9 3304 2942 700 287 37 0 chr3 1203447 1203635 -226320943 - MER58A DNA MER1_type 0 224 30 217 267 0 0 chr3 1203648 1203693 -226320885 - L2 LINE L2 -514 2800 2756 652 286 123 62 chr3 1203701 1204215 -226320363 + MLT1H1 LTR MaLR 4 548 -19 1634 306 114 13 chr3 1204223 1204917 -226319661 - L2 LINE L2 -548 2766 2003 2137 150 28 11 chr3 1205146 1205507 -226319071 + THE1C LTR MaLR 9 375 0 21 0 0 0 chr3 1206112 1206133 -226318445 + AT_rich Low_complexity Low_complexity 1 21 0 557 204 55 0 chr3 1206593 1206774 -226317804 - L1MCa LINE L1 -2889 3537 3347 6291 157 7 26 chr3 1206780 1209001 -226315577 - L1PB1 LINE L1 0 6151 3974 694 221 21 5 chr3 1208976 1209166 -226315412 - L1MCa LINE L1 -3092 3334 3142 * 2300 202 48 20 chr3 1209180 1210029 -226314549 - L1MCa LINE L1 -3495 2931 2033 465 120 100 0 chr3 1210124 1210224 -226314354 - L1MCa LINE L1 -4384 2042 1933 325 393 34 11 chr3 1210250 1210428 -226314150 + L3 LINE CR1 1331 1512 -65 232 247 82 0 chr3 1212419 1212504 -226312074 + L1ME4a LINE L1 5844 5935 -186 21 36 0 0 chr3 1214329 1214357 -226310221 + AT_rich Low_complexity Low_complexity 1 28 0 318 319 86 17 chr3 1216541 1216773 -226307805 - L1MC/D LINE L1 -2036 5772 5525 187 318 0 0 chr3 1216796 1216840 -226307738 - MIR SINE MIR -203 59 16 196 287 103 46 chr3 1216964 1217051 -226307527 + MIR SINE MIR 11 102 -160 2051 124 89 3 chr3 1217070 1217408 -226307170 - THE1C LTR MaLR -8 367 1 237 67 0 0 chr3 1217896 1217926 -226306652 + LTR6A LTR ERV1 73 102 -462 22 0 0 0 chr3 1218825 1218847 -226305731 + AT_rich Low_complexity Low_complexity 1 22 0 1800 158 51 67 chr3 1219033 1219424 -226305154 + MLT2D LTR ERVL 1 534 -20 257 196 0 0 chr3 1219449 1219500 -226305078 + MLT2C1 LTR ERVL 347 397 0 2420 54 3 0 chr3 1219660 1219956 -226304622 + AluY SINE Alu 1 297 -14 2911 76 76 2 chr3 1220122 1220544 -226304034 + MLT2A2 LTR ERVL 1 453 0 474 60 90 0 chr3 1220547 1220681 -226303897 + (TA)n Simple_repeat Simple_repeat 2 147 0 1201 179 35 16 chr3 1221023 1221280 -226303298 + L1PA7 LINE L1 5891 6152 -2 1460 245 78 21 chr3 1221824 1222261 -226302317 + MLT1C LTR MaLR 6 467 0 766 235 131 40 chr3 1222507 1222928 -226301650 + LTR37B LTR ERV1 1 459 -9 729 227 0 6 chr3 1222942 1223105 -226301473 - FRAM SINE Alu -23 153 1 205 97 16 81 chr3 1223487 1223549 -226301029 + (TTATA)n Simple_repeat Simple_repeat 1 58 0 207 69 0 0 chr3 1223761 1223790 -226300788 + (TG)n Simple_repeat Simple_repeat 2 30 0 209 297 193 28 chr3 1223901 1224046 -226300532 - MIR SINE MIR -73 189 21 349 303 9 9 chr3 1224197 1224306 -226300272 + MIR3 SINE MIR 54 162 -46 1279 218 49 35 chr3 1224404 1224831 -226299747 - HsTC2 DNA Tc2 -11 1887 1279 351 0 0 0 chr3 1225854 1225893 -226298685 + (CA)n Simple_repeat Simple_repeat 2 40 0 258 32 0 0 chr3 1225892 1225923 -226298655 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 927 233 43 9 chr3 1225966 1226198 -226298380 + MIR SINE MIR 1 240 -22 929 165 19 19 chr3 1226233 1226445 -226298133 - L1 LINE L1 -823 5323 5112 4760 169 25 6 chr3 1226450 1227348 -226297230 + L1MA8 LINE L1 5364 6278 -13 273 98 0 0 chr3 1227361 1227402 -226297176 + (CA)n Simple_repeat Simple_repeat 2 42 0 317 226 108 0 chr3 1228501 1228594 -226295984 + MER103 DNA DNA 57 159 -7 272 292 124 0 chr3 1229254 1229367 -226295211 + MER117 DNA MER1_type 6 132 -65 278 323 46 8 chr3 1229432 1229559 -226295019 - MIR SINE MIR -48 160 29 2343 83 0 0 chr3 1229582 1229883 -226294695 + AluSc SINE Alu 3 303 -6 2397 71 0 3 chr3 1230509 1230819 -226293759 + AluY SINE Alu 1 309 -2 228 315 77 49 chr3 1231123 1231266 -226293312 - MIR3 SINE MIR -4 204 58 685 259 129 9 chr3 1232707 1232939 -226291639 + MIR SINE MIR 2 261 -1 639 293 122 39 chr3 1234809 1235144 -226289434 - MLT1I LTR MaLR -5 404 42 234 204 0 19 chr3 1235246 1235300 -226289278 + (CA)n Simple_repeat Simple_repeat 2 54 0 276 100 0 0 chr3 1235300 1235340 -226289238 + (CCA)n Simple_repeat Simple_repeat 2 41 0 2116 249 42 41 chr3 1235552 1236376 -226288202 + L1MD2 LINE L1 3750 4574 -1572 893 216 0 39 chr3 1236399 1236631 -226287947 - AluJo SINE Alu -6 306 84 757 158 8 0 chr3 1236734 1236854 -226287724 - FLAM_C SINE Alu -22 121 1 331 277 52 78 chr3 1236892 1237123 -226287455 + L1MD2 LINE L1 4579 4803 -1343 24 85 0 0 chr3 1237140 1237199 -226287379 + AT_rich Low_complexity Low_complexity 1 59 0 3580 238 44 32 chr3 1237204 1238654 -226285924 + L1MD2 LINE L1 4793 6355 -4 * 5291 183 28 13 chr3 1238651 1238782 -226285796 + L1MA8 LINE L1 4195 4323 -1968 1910 132 3 56 chr3 1238782 1239101 -226285477 - AluSc SINE Alu -5 304 3 5291 183 28 13 chr3 1239101 1239843 -226284735 + L1MA8 LINE L1 4323 5052 -1239 2184 165 30 37 chr3 1239843 1240303 -226284275 + MSTB2 LTR MaLR 1 457 0 5291 183 28 13 chr3 1240303 1241498 -226283080 + L1MA8 LINE L1 5052 6291 0 22 0 0 0 chr3 1242185 1242207 -226282371 + AT_rich Low_complexity Low_complexity 1 22 0 200 327 0 0 chr3 1243448 1243503 -226281075 - MIR SINE MIR -150 112 58 366 303 53 53 chr3 1244541 1244729 -226279849 + L2 LINE L2 2584 2771 -543 3923 150 34 4 chr3 1245001 1245714 -226278864 - L1MA4 LINE L1 -6 6294 5561 322 287 60 47 chr3 1246173 1246323 -226278255 + L2 LINE L2 3162 3313 0 423 265 61 30 chr3 1246430 1246562 -226278016 - LTR16C LTR ERVL 0 491 356 1706 112 4 7 chr3 1247292 1247569 -226277009 - L1MA5A LINE L1 -1 6296 6021 187 296 37 19 chr3 1247893 1247947 -226276631 + L2 LINE L2 3134 3188 -84 354 322 22 0 chr3 1249021 1249111 -226275467 + MER5A DNA MER1_type 10 101 -88 525 366 50 9 chr3 1249198 1249515 -226275063 + MLT1J LTR MaLR 3 332 -179 25 0 0 0 chr3 1251374 1251399 -226273179 + AT_rich Low_complexity Low_complexity 1 25 0 31 0 0 24 chr3 1251878 1251907 -226272671 + AT_rich Low_complexity Low_complexity 1 30 -11 1184 15 0 0 chr3 1251907 1252044 -226272534 - L1PA4 LINE L1 -8 6147 6011 31 0 0 24 chr3 1252044 1252056 -226272522 + AT_rich Low_complexity Low_complexity 30 41 0 239 325 38 12 chr3 1252734 1252814 -226271764 + MIR SINE MIR 34 115 -147 285 29 0 0 chr3 1252852 1252886 -226271692 + (GA)n Simple_repeat Simple_repeat 1 34 0 2121 305 43 46 chr3 1252894 1254639 -226269939 - L1M4 LINE L1 -888 5258 3520 608 241 91 37 chr3 1254978 1255219 -226269359 + Charlie5 DNA MER1_type 2234 2487 -125 246 301 0 0 chr3 1255245 1255318 -226269260 - L1M4 LINE L1 -2056 4090 4018 721 359 31 29 chr3 1255332 1255912 -226268666 + L1PA13 LINE L1 788 1368 -6206 471 300 52 14 chr3 1255896 1256170 -226268408 + L1PA13 LINE L1 2069 2303 -5271 * 4287 231 35 18 chr3 1256408 1257625 -226266953 + L1PA13 LINE L1 2188 3439 -4145 2076 143 0 0 chr3 1257625 1257926 -226266652 + AluSx SINE Alu 3 303 -9 4287 231 35 18 chr3 1257926 1258109 -226266469 + L1PA13 LINE L1 3439 3617 -3967 24 0 0 0 chr3 1258309 1258333 -226266245 + AT_rich Low_complexity Low_complexity 1 24 0 2896 252 50 14 chr3 1258471 1259484 -226265094 + L1PA13 LINE L1 3599 4648 -2936 * 16282 191 32 37 chr3 1259477 1263162 -226261416 - L1PB1 LINE L1 0 6867 3167 7107 6 0 0 chr3 1263162 1263956 -226260622 + L1PA2 LINE L1 5344 6138 -17 16282 191 32 37 chr3 1263956 1266324 -226258254 - L1PB1 LINE L1 -3700 3167 993 273 29 0 0 chr3 1266324 1266358 -226258220 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 16282 191 32 37 chr3 1266358 1267346 -226257232 - L1PB1 LINE L1 -5874 993 2 246 356 130 14 chr3 1267402 1267618 -226256960 + L2 LINE L2 2830 3070 -202 271 311 75 112 chr3 1268214 1268784 -226255794 + LTR67 LTR ERVL 4 552 -5 445 305 41 35 chr3 1269031 1269228 -226255350 + MIR SINE MIR 65 262 0 230 363 50 45 chr3 1270060 1270239 -226254339 - L2 LINE L2 -522 2792 2613 22 0 0 0 chr3 1270628 1270650 -226253928 + AT_rich Low_complexity Low_complexity 1 22 0 2303 123 43 6 chr3 1270784 1271135 -226253443 + THE1B LTR MaLR 1 364 0 1345 215 49 89 chr3 1271912 1272438 -226252140 + MLT1D LTR MaLR 1 505 0 2166 109 3 0 chr3 1273905 1274199 -226250379 - AluSx SINE Alu -17 295 1 199 298 229 0 chr3 1274329 1274460 -226250118 - MIR SINE MIR -53 209 49 1039 105 62 0 chr3 1275184 1275346 -226249232 - L1PA16 LINE L1 -16 6150 5979 371 221 171 57 chr3 1275447 1275587 -226248991 - MER5B DNA MER1_type -22 156 1 348 228 38 13 chr3 1275657 1275736 -226248842 - MER94 DNA DNA -53 81 1 319 317 14 62 chr3 1275738 1275883 -226248695 - MER5A DNA MER1_type -24 165 28 4043 189 40 0 chr3 1275900 1276681 -226247897 - L1MC1 LINE L1 0 6333 5522 18728 30 0 0 chr3 1476681 1478954 -226045624 - L1P LINE L1 -840 5306 3034 246 266 31 0 chr3 1480551 1480615 -226043963 - MLT2D LTR ERVL -118 296 231 758 201 85 0 chr3 1484257 1484421 -226040157 - MER5B DNA MER1_type 0 178 1 243 200 50 62 chr3 1484438 1484518 -226040060 - Charlie8 DNA MER1_type 0 2417 2339 359 307 94 40 chr3 1484976 1485178 -226039400 + MIR SINE MIR 49 261 -1 523 233 39 0 chr3 1485580 1485709 -226038869 + MLT1C LTR MaLR 34 167 -300 7086 39 8 3 chr3 1485715 1486764 -226037814 + L1PA4 LINE L1 5139 6155 0 832 241 84 45 chr3 1486764 1487050 -226037528 + MLT1C LTR MaLR 171 467 0 311 183 14 0 chr3 1487574 1487645 -226036933 - L1MDa LINE L1 -4351 2189 2118 2174 203 51 75 chr3 1487749 1488572 -226036006 - L1MDa LINE L1 -4441 2099 1297 2617 255 50 22 chr3 1488587 1489261 -226035317 - L1MDa LINE L1 -5831 709 17 1634 178 3 28 chr3 1490234 1490520 -226034058 - AluJb SINE Alu -31 281 3 1869 179 42 8 chr3 1490849 1491202 -226033376 - MLT1A1 LTR MaLR 0 365 1 1870 142 64 0 chr3 1491408 1491689 -226032889 + AluSx SINE Alu 1 299 -13 24 32 0 0 chr3 1491838 1491869 -226032709 + AT_rich Low_complexity Low_complexity 1 31 0 228 167 0 0 chr3 1491902 1491950 -226032628 + LTR66 LTR ERVL 392 439 -171 264 122 0 0 chr3 1491952 1491993 -226032585 + (TA)n Simple_repeat Simple_repeat 1 41 0 237 164 164 0 chr3 1491995 1492056 -226032522 + MIR SINE MIR 70 140 -122 230 204 0 0 chr3 1492083 1492127 -226032451 + Tigger2 DNA MER2_type 26 69 -2649 * 2416 148 60 7 chr3 1492114 1492534 -226032044 + Tigger2 DNA MER2_type 2271 2712 -6 226 310 0 0 chr3 1492545 1492603 -226031975 + MIR SINE MIR 156 213 -49 2399 67 3 3 chr3 1492786 1493084 -226031494 - AluY SINE Alu -13 298 1 186 43 0 0 chr3 1493201 1493224 -226031354 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 435 239 9 18 chr3 1493644 1493757 -226030821 - MLT1E3 LTR MaLR -459 165 54 228 342 0 26 chr3 1496347 1496423 -226028155 + MIR SINE MIR 20 93 -115 458 296 23 8 chr3 1496523 1496655 -226027923 + MIR SINE MIR 127 260 -2 195 368 0 0 chr3 1496878 1496946 -226027632 + L2 LINE L2 3205 3272 0 418 321 93 19 chr3 1497200 1497362 -226027216 + MIR3 SINE MIR 20 193 -15 323 325 84 19 chr3 1497555 1497709 -226026869 + MIR SINE MIR 22 185 -77 185 339 36 36 chr3 1497899 1498011 -226026567 - L2 LINE L2 -3 3310 3199 28 61 0 0 chr3 1498131 1498180 -226026398 + AT_rich Low_complexity Low_complexity 1 49 0 829 307 107 58 chr3 1498315 1499213 -226025365 - L2 LINE L2 0 3313 2375 672 224 153 10 chr3 1499223 1499419 -226025159 - MER58A DNA MER1_type 0 224 1 1069 324 166 14 chr3 1499423 1500146 -226024432 - L2 LINE L2 -947 2367 1535 285 277 0 32 chr3 1500283 1500377 -226024201 - MER63 DNA MER1_type -312 750 34 299 206 0 0 chr3 1500526 1500589 -226023989 + MLT1E2 LTR MaLR 548 610 -16 733 277 0 21 chr3 1501067 1501255 -226023323 + MIR SINE MIR 2 185 -77 263 297 0 0 chr3 1501749 1501813 -226022765 + MIR SINE MIR 180 243 -19 3157 82 9 24 chr3 1502258 1502709 -226021869 + MLT2A1 LTR ERVL 1 444 0 231 36 0 0 chr3 1502785 1502813 -226021765 + (CA)n Simple_repeat Simple_repeat 1 28 0 192 77 0 0 chr3 1502839 1502865 -226021713 + (CA)n Simple_repeat Simple_repeat 1 26 0 186 301 126 10 chr3 1503789 1503892 -226020686 - L3 LINE CR1 -878 699 585 303 311 120 70 chr3 1504030 1504471 -226020107 + L2 LINE L2 2335 2797 -517 336 317 83 22 chr3 1504720 1504900 -226019678 + L2 LINE L2 3118 3308 -5 279 343 26 82 chr3 1504900 1505168 -226019410 - L3 LINE CR1 -259 1318 1066 282 287 33 16 chr3 1506255 1506377 -226018201 + GA-rich Low_complexity Low_complexity 3 126 0 265 333 61 10 chr3 1506976 1507075 -226017503 - L2 LINE L2 0 3272 3169 * 942 275 83 73 chr3 1507072 1507597 -226016981 - L2 LINE L2 -2 3311 2777 777 118 0 0 chr3 1507624 1507734 -226016844 - MSTB1 LTR MaLR -322 110 1 1343 293 124 15 chr3 1507780 1508448 -226016130 - L2 LINE L2 -629 2685 1945 207 419 26 21 chr3 1508618 1508809 -226015769 - L2 LINE L2 -212 3060 2869 2430 200 34 20 chr3 1509152 1509707 -226014871 + L1MB3 LINE L1 5615 6177 -6 338 260 42 21 chr3 1509864 1509960 -226014618 - MLT1L LTR MaLR -221 394 297 183 250 0 0 chr3 1510142 1510210 -226014368 + C-rich Low_complexity Low_complexity 1 68 0 661 303 31 12 chr3 1510343 1510597 -226013981 + L1PA12 LINE L1 1 259 -7322 6533 235 32 17 chr3 1510609 1513257 -226011321 + L1PA12 LINE L1 1924 4624 -2960 2754 22 0 0 chr3 1513257 1513568 -226011010 + AluYa5 SINE Alu 1 311 0 6533 235 32 17 chr3 1513568 1513743 -226010835 + L1PA12 LINE L1 4624 4795 -2789 632 157 0 17 chr3 1513843 1514015 -226010563 + G-rich Low_complexity Low_complexity 1 169 0 1881 155 0 7 chr3 1514348 1514639 -226009939 - AluSg SINE Alu -19 291 3 26 0 0 0 chr3 1515316 1515342 -226009236 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr3 1516002 1516025 -226008553 + AT_rich Low_complexity Low_complexity 1 23 0 383 327 107 58 chr3 1516470 1517057 -226007521 - L2 LINE L2 0 3313 2705 245 211 47 39 chr3 1517083 1517211 -226007367 + (CATATA)n Simple_repeat Simple_repeat 3 131 0 204 323 31 0 chr3 1517743 1517808 -226006770 + L2 LINE L2 3247 3313 0 453 280 40 13 chr3 1518090 1518240 -226006338 + L2 LINE L2 3154 3307 -6 1315 207 28 69 chr3 1518536 1518898 -226005680 - MER82 DNA MER2_type -305 348 2 206 257 46 9 chr3 1518899 1519008 -226005570 + (TA)n Simple_repeat Simple_repeat 2 114 0 339 25 0 0 chr3 1519246 1519286 -226005292 + (TA)n Simple_repeat Simple_repeat 1 40 0 962 77 0 8 chr3 1520210 1520340 -226004238 + L1PA10 LINE L1 6040 6168 0 228 35 0 0 chr3 1520425 1520454 -226004124 + (CA)n Simple_repeat Simple_repeat 2 30 0 2185 121 3 0 chr3 1520631 1520938 -226003640 + AluSx SINE Alu 1 308 -4 1817 119 159 68 chr3 1521150 1521520 -226003058 - MER4A LTR ERV1 0 664 261 638 121 0 10 chr3 1521520 1521619 -226002959 - MER4A LTR ERV1 -566 98 1 805 172 79 16 chr3 1521619 1521916 -226002662 + LTR54B LTR ERV1 54 405 -105 2396 102 83 137 chr3 1521930 1522507 -226002071 - LTR10A LTR ERV1 -63 546 1 581 150 9 9 chr3 1522507 1522620 -226001958 + LTR54 LTR ERV1 394 506 -4 520 296 51 5 chr3 1524470 1524666 -225999912 + L1ME LINE L1 5466 5670 -500 7295 97 15 2 chr3 1524764 1525837 -225998741 + L1P LINE L1 1850 2936 -3210 26 0 0 0 chr3 1526073 1526099 -225998479 + AT_rich Low_complexity Low_complexity 1 26 0 566 236 45 68 chr3 1526193 1526413 -225998165 + MIR SINE MIR 12 226 -36 2194 127 0 7 chr3 1526413 1526721 -225997857 + AluSx SINE Alu 1 306 -6 22 35 0 0 chr3 1527378 1527407 -225997171 + AT_rich Low_complexity Low_complexity 1 29 0 2189 95 3 0 chr3 1527999 1528293 -225996285 + AluSp SINE Alu 1 295 -18 909 93 0 0 chr3 1528295 1528424 -225996154 + (TA)n Simple_repeat Simple_repeat 2 130 0 1176 185 88 55 chr3 1528573 1528936 -225995642 - MER39 LTR ERV1 -25 682 308 246 242 30 61 chr3 1528909 1529008 -225995570 - LTR48B LTR ERV1 -544 100 5 * 219 302 70 12 chr3 1530293 1530379 -225994199 - L2 LINE L2 -458 2856 2766 2384 93 3 0 chr3 1530876 1531186 -225993392 - AluSp SINE Alu -1 312 2 14732 96 4 16 chr3 1531591 1533765 -225990813 + HERVH LTR ERV1 845 2992 -4721 897 142 20 0 chr3 1533751 1533899 -225990679 + HERVH LTR ERV1 3140 3290 -4423 * 3254 113 6 8 chr3 1533889 1534392 -225990186 + HERVH LTR ERV1 3492 3993 -3720 4406 138 0 1 chr3 1534396 1535057 -225989521 + HERVH LTR ERV1 4490 5149 -2564 1363 113 38 0 chr3 1535058 1535270 -225989308 + HERVH LTR ERV1 5600 5819 -1894 * 2342 103 48 13 chr3 1535268 1535647 -225988931 + HERVH LTR ERV1 7322 7713 0 2794 78 92 5 chr3 1535647 1536059 -225988519 + LTR7 LTR ERV1 1 448 -2 308 247 6 137 chr3 1536097 1536279 -225988299 - L1MEd LINE L1 -4481 1648 1491 268 302 70 43 chr3 1536396 1537016 -225987562 - L1MEd LINE L1 -4618 1511 889 504 205 117 23 chr3 1537027 1537198 -225987380 - MER53 DNA DNA -2 187 1 27 73 0 0 chr3 1537235 1537290 -225987288 + AT_rich Low_complexity Low_complexity 1 55 0 1226 235 88 122 chr3 1537384 1538006 -225986572 + MLT1E1 LTR MaLR 3 603 -51 555 243 108 47 chr3 1539160 1539456 -225985122 + HAL1 LINE L1 1251 1564 -943 573 136 17 8 chr3 1539469 1539587 -225984991 + GA-rich Low_complexity Low_complexity 2 120 0 259 304 38 0 chr3 1540582 1540661 -225983917 - L2 LINE L2 -37 3276 3195 2764 99 0 0 chr3 1541129 1541493 -225983085 + THE1B LTR MaLR 1 364 0 2713 87 3 3 chr3 1542141 1542511 -225982067 + L1PA8 LINE L1 5795 6164 -8 210 37 0 0 chr3 1542790 1542817 -225981761 + (CA)n Simple_repeat Simple_repeat 1 27 0 897 194 0 29 chr3 1544146 1544316 -225980262 - FRAM SINE Alu -12 164 1 3259 197 43 64 chr3 1544343 1544850 -225979728 + L1MC3 LINE L1 6893 7374 -411 1096 204 42 4 chr3 1544850 1545110 -225979468 + L1PB4 LINE L1 5887 6156 0 3259 197 43 64 chr3 1545110 1545494 -225979084 + L1MC3 LINE L1 7374 7765 -20 2456 84 3 0 chr3 1545628 1545937 -225978641 - AluSp SINE Alu -3 310 1 2237 104 3 0 chr3 1548448 1548746 -225975832 + AluY SINE Alu 1 299 -12 278 290 161 0 chr3 1549811 1549904 -225974674 + MIR SINE MIR 52 159 -103 904 237 50 80 chr3 1549908 1550284 -225974294 + MLT1C LTR MaLR 1 365 -102 458 241 0 18 chr3 1550627 1550739 -225973839 + MLT1C LTR MaLR 358 467 0 1048 92 7 0 chr3 1551386 1551528 -225973050 + L1P LINE L1 2 144 -6002 1057 30 0 23 chr3 1551534 1551665 -225972913 + L1P1 LINE L1 5517 5644 -511 2297 90 0 0 chr3 1551666 1551954 -225972624 + AluY SINE Alu 10 297 -14 1770 176 115 16 chr3 1551954 1552449 -225972129 - L1M4c LINE L1 -4334 2048 1374 312 27 0 0 chr3 1552461 1552498 -225972080 + (TG)n Simple_repeat Simple_repeat 2 38 0 1993 172 112 84 chr3 1552900 1553546 -225971032 + MER4A LTR ERV1 1 664 0 1604 186 28 34 chr3 1553735 1554062 -225970516 + MER21B LTR ERV1 1 325 -538 1809 238 49 10 chr3 1554123 1554531 -225970047 + MER21B LTR ERV1 425 848 -15 435 321 93 22 chr3 1555388 1555805 -225968773 + L1ME4a LINE L1 5673 6119 -2 255 152 0 0 chr3 1556689 1556735 -225967843 + A-rich Low_complexity Low_complexity 1 46 0 367 328 15 15 chr3 1556867 1556998 -225967580 - L2 LINE L2 0 3313 3183 1185 231 9 47 chr3 1557588 1557908 -225966670 + L1MD2 LINE L1 6023 6330 -29 23 33 0 0 chr3 1559647 1559677 -225964901 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr3 1559979 1560017 -225964561 + AT_rich Low_complexity Low_complexity 1 38 0 2078 92 7 0 chr3 1560622 1560895 -225963683 + AluSc SINE Alu 2 276 -33 180 0 0 0 chr3 1560937 1560957 -225963621 + (GA)n Simple_repeat Simple_repeat 2 21 0 3576 187 29 22 chr3 1561417 1562826 -225961752 + L1MA9 LINE L1 4642 6176 -136 210 37 0 0 chr3 1562826 1562853 -225961725 + (CA)n Simple_repeat Simple_repeat 2 28 0 3576 187 29 22 chr3 1562853 1562991 -225961587 + L1MA9 LINE L1 6176 6312 0 22 0 0 0 chr3 1564302 1564324 -225960254 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr3 1564682 1564719 -225959859 + AT_rich Low_complexity Low_complexity 1 37 0 803 182 127 0 chr3 1565069 1565216 -225959362 - MSTA LTR MaLR -1 427 260 995 175 11 6 chr3 1565216 1565399 -225959179 - LTR2 LTR ERV1 0 449 266 659 203 1 0 chr3 1565456 1565684 -225958894 - Harlequin LTR ERV1 -1 6895 6699 1457 67 5 10 chr3 1566428 1566636 -225957942 + LTR7 LTR ERV1 242 448 -2 519 272 69 6 chr3 1566715 1566888 -225957690 + MER5A DNA MER1_type 4 187 -2 1027 183 0 0 chr3 1567164 1567333 -225957245 + FRAM SINE Alu 1 169 -7 754 248 96 0 chr3 1567359 1567557 -225957021 + MIR SINE MIR 46 262 0 2091 160 77 15 chr3 1567785 1568186 -225956392 - MSTB LTR MaLR 0 426 1 1648 185 0 43 chr3 1568506 1568830 -225955748 - AluJb SINE Alu 0 312 3 3138 208 64 29 chr3 1569707 1570492 -225954086 + L1MC2 LINE L1 5416 6227 -117 3690 169 51 34 chr3 1570922 1571091 -225953487 - L1MA6 LINE L1 -10 7311 7147 2291 168 20 0 chr3 1571091 1571484 -225953094 - MER57A LTR ERV1 0 403 3 2149 120 3 7 chr3 1571487 1571796 -225952782 + AluSx SINE Alu 3 310 -2 3690 169 51 34 chr3 1571796 1572056 -225952522 - L1MA6 LINE L1 -175 7146 6892 2384 115 16 19 chr3 1572056 1572430 -225952148 + THE1C LTR MaLR 3 375 0 3690 169 51 34 chr3 1572430 1572831 -225951747 - L1MA6 LINE L1 -429 6892 6461 * 10441 230 45 29 chr3 1572822 1573395 -225951183 - L1MA6 LINE L1 -1400 5767 5204 189 0 0 0 chr3 1573395 1573416 -225951162 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 10441 230 45 29 chr3 1573416 1577387 -225947191 - L1MA6 LINE L1 -1963 5204 1472 1497 305 58 53 chr3 1577413 1578055 -225946523 - L1MA6 LINE L1 -6144 1024 1 196 307 51 117 chr3 1578194 1578331 -225946247 + MIR3 SINE MIR 30 157 -51 1115 36 0 0 chr3 1578701 1578838 -225945740 - L1PA4 LINE L1 -3 6152 6016 631 275 13 61 chr3 1579217 1579446 -225945132 - MER20 DNA MER1_type -1 218 1 1152 199 55 65 chr3 1579536 1579952 -225944626 - L1MB8 LINE L1 -9 6169 5758 408 289 79 3 chr3 1580054 1580383 -225944195 - L1MEc LINE L1 -3653 2562 2209 301 311 88 51 chr3 1580394 1580445 -225944133 - L1MEc LINE L1 -4159 2237 2189 7072 59 6 1 chr3 1580445 1581544 -225943034 + L1PA8 LINE L1 5070 6172 0 301 311 88 51 chr3 1581544 1581823 -225942755 - L1MEc LINE L1 -4207 2189 1895 2769 92 92 5 chr3 1581825 1582237 -225942341 + LTR7 LTR ERV1 1 448 -2 4411 87 42 5 chr3 1582239 1582903 -225941675 + HERVH LTR ERV1 1 689 -7024 32 26 0 0 chr3 1584014 1584053 -225940525 + AT_rich Low_complexity Low_complexity 1 39 0 663 295 92 4 chr3 1584165 1584426 -225940152 + MLT1F LTR MaLR 1 284 -258 303 193 45 23 chr3 1584420 1584508 -225940070 + MLT1F LTR MaLR 474 563 -4 * 333 269 0 42 chr3 1584593 1584712 -225939866 + MLT1-int LTR MaLR 437 550 -821 1682 64 0 0 chr3 1584924 1585127 -225939451 - AluY SINE Alu -11 300 98 804 211 36 135 chr3 1585177 1585598 -225938980 - MLT1B LTR MaLR -8 382 4 1605 230 44 80 chr3 1585605 1586469 -225938109 - MLT1C-int LTR MaLR -4 1705 557 1073 164 13 4 chr3 1586453 1586716 -225937862 - MLT1C-int LTR MaLR -988 383 1 * 1133 206 124 79 chr3 1586716 1587158 -225937420 - MLT1C LTR MaLR 0 467 6 27 49 0 0 chr3 1587219 1587260 -225937318 + AT_rich Low_complexity Low_complexity 1 41 0 328 304 14 40 chr3 1587302 1587450 -225937128 + L1ME LINE L1 3682 3825 -2321 246 276 71 8 chr3 1587454 1587581 -225936997 - MLT1J LTR MaLR -3 508 374 270 314 20 52 chr3 1587686 1587839 -225936739 - MLT1J LTR MaLR -312 199 52 304 289 60 24 chr3 1588546 1588712 -225935866 + L1ME LINE L1 4545 4716 -1430 8403 38 2 0 chr3 1588759 1589830 -225934748 - L1PA3 LINE L1 -1782 4364 3292 8660 23 0 0 chr3 1589830 1591618 -225932960 + L1PA3 LINE L1 4365 6153 -2 29 47 0 0 chr3 1591876 1591919 -225932659 + AT_rich Low_complexity Low_complexity 1 43 0 254 272 39 39 chr3 1593101 1593204 -225931374 + L1ME LINE L1 5727 5829 -333 1439 286 12 45 chr3 1593430 1593940 -225930638 + L1MA4A LINE L1 1 493 -6356 4231 208 24 35 chr3 1594002 1594783 -225929795 + L1MA4A LINE L1 1168 1935 -4914 2260 114 0 16 chr3 1594783 1595100 -225929478 + AluSx SINE Alu 1 312 0 4231 208 24 35 chr3 1595100 1595397 -225929181 + L1MA4A LINE L1 1935 2234 -4615 4825 141 6 4 chr3 1595440 1596263 -225928315 + L1PA16 LINE L1 5329 6153 -13 9020 180 45 10 chr3 1596287 1597424 -225927154 + L1MA4A LINE L1 3881 4976 -2029 2547 65 0 0 chr3 1597424 1597732 -225926846 + AluY SINE Alu 1 308 -3 9020 180 45 10 chr3 1597732 1598670 -225925908 + L1MA4A LINE L1 4976 5879 -1126 1467 118 5 0 chr3 1598670 1598873 -225925705 + AluSq SINE Alu 101 304 -9 9020 180 45 10 chr3 1598873 1599649 -225924929 + L1MA4A LINE L1 5879 6821 -184 403 177 10 42 chr3 1599650 1599746 -225924832 + L1MA4A LINE L1 6890 6982 -23 249 250 31 0 chr3 1600680 1600744 -225923834 - MLT2D LTR ERVL -118 296 231 237 192 39 0 chr3 1601052 1601104 -225923474 - MLT2D LTR ERVL -130 284 231 324 0 0 0 chr3 1601289 1601325 -225923253 + (GA)n Simple_repeat Simple_repeat 2 37 0 355 348 61 6 chr3 1602498 1602662 -225921916 - L1ME LINE L1 -348 5822 5650 1453 158 9 0 chr3 1603010 1603231 -225921347 - AluSg/x SINE Alu -25 287 65 6729 122 14 53 chr3 1603232 1604144 -225920434 - L1M1 LINE L1 -4670 2895 1949 1889 186 0 3 chr3 1604144 1604451 -225920127 - AluJb SINE Alu -6 306 1 6729 122 14 53 chr3 1604451 1604472 -225920106 - L1M1 LINE L1 -5616 1949 1929 2171 108 4 0 chr3 1604472 1604751 -225919827 - AluSp SINE Alu -33 280 1 6729 122 14 53 chr3 1604751 1605071 -225919507 - L1M1 LINE L1 -5636 1929 1690 823 234 6 33 chr3 1605071 1605428 -225919150 - LTR2 LTR ERV1 0 449 3 801 154 0 0 chr3 1605430 1605566 -225919012 - Harlequin LTR ERV1 0 6896 6761 29339 163 8 19 chr3 1605623 1610930 -225913648 - Harlequin LTR ERV1 -1297 6516 1266 2721 164 30 6 chr3 1610931 1611425 -225913153 - Harlequin LTR ERV1 -6796 1017 512 2095 170 3 13 chr3 1611506 1611894 -225912684 - Harlequin LTR ERV1 -6512 384 1 850 201 5 5 chr3 1611894 1612078 -225912500 - LTR2 LTR ERV1 0 449 266 1186 155 71 8 chr3 1612147 1612386 -225912192 - MSTA LTR MaLR -164 264 11 22 0 0 0 chr3 1612989 1613011 -225911567 + AT_rich Low_complexity Low_complexity 1 22 0 1749 117 79 10 chr3 1613303 1613594 -225910984 + L1PA10 LINE L1 5858 6168 0 2800 222 26 39 chr3 1615470 1615854 -225908724 + L1ME2 LINE L1 4867 5254 -910 2203 138 8 114 chr3 1615854 1615995 -225908583 - Tigger2a DNA MER2_type -2274 434 280 1385 184 54 22 chr3 1615995 1616272 -225908306 - AluJo SINE Alu -26 286 1 2203 138 8 114 chr3 1616272 1616614 -225907964 - Tigger2a DNA MER2_type -2428 280 2 2800 222 26 39 chr3 1616614 1616861 -225907717 + L1ME2 LINE L1 5254 5503 -661 1701 197 77 64 chr3 1616861 1617358 -225907220 - MLT1D LTR MaLR -2 503 1 2800 222 26 39 chr3 1617358 1618004 -225906574 + L1ME2 LINE L1 5503 6148 -16 21 0 0 0 chr3 1618426 1618447 -225906131 + AT_rich Low_complexity Low_complexity 1 21 0 1117 215 11 21 chr3 1620607 1620886 -225903692 - MLT1C LTR MaLR -6 461 186 647 183 82 67 chr3 1620901 1621109 -225903469 - MLT1C LTR MaLR -256 211 1 208 304 0 0 chr3 1621340 1621396 -225903182 + L2 LINE L2 3217 3272 0 1547 169 177 14 chr3 1621430 1621791 -225902787 + MSTA LTR MaLR 9 428 0 191 185 0 19 chr3 1622840 1622894 -225901684 + (TA)n Simple_repeat Simple_repeat 2 54 0 282 290 45 142 chr3 1623085 1623416 -225901162 + L2 LINE L2 2969 3267 -5 1870 125 3 10 chr3 1624629 1624917 -225899661 - L1PA11 LINE L1 -1 6173 5888 21 0 0 0 chr3 1625120 1625141 -225899437 + AT_rich Low_complexity Low_complexity 1 21 0 1135 248 95 24 chr3 1625180 1626113 -225898465 - L1ME1 LINE L1 -18 6148 5122 6348 133 17 8 chr3 1626158 1627457 -225897121 - L1MA1 LINE L1 -8 6294 4982 2007 141 26 32 chr3 1627481 1627858 -225896720 + THE1C LTR MaLR 1 375 0 8216 132 26 31 chr3 1627884 1629312 -225895266 + THE1C-int LTR MaLR 161 1580 0 1314 158 13 18 chr3 1629312 1629540 -225895038 + THE1C LTR MaLR 1 227 -148 658 130 10 0 chr3 1629542 1629642 -225894936 - LTR28 LTR ERV1 -919 101 1 18109 177 37 12 chr3 1629642 1633039 -225891539 - L1M1 LINE L1 -4077 3488 7 2434 262 56 40 chr3 1633037 1633618 -225890960 - L1ME1 LINE L1 -1080 5066 4496 * 1733 173 52 25 chr3 1633618 1633983 -225890595 - THE1C LTR MaLR 0 375 1 2434 262 56 40 chr3 1633983 1634610 -225889968 - L1ME1 LINE L1 -1650 4496 3839 1048 245 31 0 chr3 1634629 1634682 -225889896 - L1ME1 LINE L1 -3408 2738 2688 448 16 33 0 chr3 1634682 1634743 -225889835 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 1048 245 31 0 chr3 1634743 1634975 -225889603 - L1ME1 LINE L1 -3458 2688 2444 1150 235 93 55 chr3 1634988 1635342 -225889236 + L1ME1 LINE L1 4682 5021 -1145 1926 154 28 25 chr3 1635342 1635705 -225888873 - THE1B LTR MaLR 0 364 1 1150 235 93 55 chr3 1635705 1636380 -225888198 + L1ME1 LINE L1 5021 5735 -431 24321 107 14 2 chr3 1636388 1640856 -225883722 - L1PA7 LINE L1 -4 6465 1963 235 252 7 43 chr3 1640891 1641030 -225883548 + (CACCC)n Simple_repeat Simple_repeat 2 135 0 186 192 0 0 chr3 1641033 1641085 -225883493 + C-rich Low_complexity Low_complexity 1 52 0 11692 126 14 18 chr3 1641189 1643254 -225881324 - L1PA7 LINE L1 -4379 2082 5 1437 241 32 15 chr3 1643262 1643672 -225880906 + L1ME1 LINE L1 5736 6152 -14 198 286 55 22 chr3 1643750 1643841 -225880737 - L2 LINE L2 -534 2780 2687 180 0 0 0 chr3 1644041 1644061 -225880517 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 5776 22 1 0 chr3 1644061 1644731 -225879847 - L1PA3 LINE L1 -11 6144 5474 20663 50 51 4 chr3 1644831 1647499 -225877079 - L1P LINE L1 -3352 2794 2 6220 199 34 14 chr3 1647721 1648971 -225875607 - MSTB-int LTR MaLR -375 1276 1 1316 183 29 17 chr3 1648971 1649212 -225875366 - MSTB LTR MaLR 0 426 183 2131 175 51 24 chr3 1649212 1649703 -225874875 - MER75 DNA T2_type 0 514 11 428 172 0 0 chr3 1649685 1649749 -225874829 - MER75 DNA T2_type -443 71 8 * 1008 193 11 16 chr3 1649749 1649936 -225874642 - MSTB LTR MaLR -240 186 1 803 180 22 51 chr3 1650638 1650816 -225873762 + MER58A DNA MER1_type 45 217 -7 21 0 0 0 chr3 1651208 1651229 -225873349 + AT_rich Low_complexity Low_complexity 1 21 0 227 344 150 22 chr3 1651257 1651437 -225873141 + L3 LINE CR1 1374 1576 -1 280 276 200 5 chr3 1651884 1652094 -225872484 - L1ME4a LINE L1 -113 6008 5758 2185 171 55 0 chr3 1653559 1653957 -225870621 + MSTB LTR MaLR 1 420 -6 349 273 116 0 chr3 1654497 1654618 -225869960 + MIR SINE MIR 65 199 -63 185 397 0 0 chr3 1656222 1656290 -225868288 + L2 LINE L2 2794 2861 -453 190 373 15 0 chr3 1657800 1657867 -225866711 + MIR3 SINE MIR 89 156 -52 211 284 54 0 chr3 1657919 1657993 -225866585 - MIR SINE MIR -5 257 180 1322 206 16 38 chr3 1658037 1658352 -225866226 + AluJo SINE Alu 3 310 -2 514 296 22 22 chr3 1658657 1658836 -225865742 - MLT1J LTR MaLR -325 186 8 198 325 98 32 chr3 1658854 1658977 -225865601 - MIR SINE MIR -115 147 17 24 0 0 0 chr3 1659468 1659492 -225865086 + AT_rich Low_complexity Low_complexity 1 24 0 217 117 83 0 chr3 1659921 1659981 -225864597 + (TA)n Simple_repeat Simple_repeat 1 65 0 333 296 110 76 chr3 1660550 1660790 -225863788 - HAL1 LINE L1 -556 1951 1692 904 223 0 0 chr3 1660790 1660965 -225863613 - FAM SINE Alu 0 175 1 333 296 110 76 chr3 1660965 1661106 -225863472 - HAL1 LINE L1 -815 1692 1557 401 315 123 30 chr3 1661113 1661348 -225863230 - HAL1 LINE L1 -1090 1417 1161 1127 235 39 78 chr3 1661771 1662183 -225862395 - MSTD LTR MaLR 0 396 1 1848 152 3 7 chr3 1662480 1662769 -225861809 - AluSx SINE Alu -14 298 11 233 292 0 0 chr3 1662904 1662976 -225861602 + MER116 DNA Mariner 6 77 -3 222 37 0 0 chr3 1714455 1714482 -225810096 + (CA)n Simple_repeat Simple_repeat 2 28 0 230 162 0 0 chr3 1714853 1714890 -225809688 - MLT2C2 LTR ERVL -2 462 426 926 208 63 0 chr3 1714927 1715134 -225809444 - MLT2B1 LTR ERVL -300 220 1 21 36 0 0 chr3 1716013 1716041 -225808537 + AT_rich Low_complexity Low_complexity 1 28 0 1763 205 3 6 chr3 1716143 1716504 -225808074 - MER46B DNA MER2_type -1 235 1 21 57 0 0 chr3 1717813 1717848 -225806730 + AT_rich Low_complexity Low_complexity 1 35 0 672 252 26 52 chr3 1718832 1719062 -225805516 + MIR SINE MIR 13 236 -26 572 328 58 17 chr3 1719235 1719476 -225805102 - MIR SINE MIR 0 262 12 1718 237 92 13 chr3 1719485 1720020 -225804558 + MER119 DNA MER1_type 7 583 0 2256 204 60 30 chr3 1720160 1720698 -225803880 - MLT2B3 LTR ERVL 0 554 1 251 325 36 0 chr3 1720920 1721003 -225803575 - L2 LINE L2 -3 3269 3184 197 319 132 42 chr3 1722386 1722530 -225802048 - L2 LINE L2 0 3272 3116 313 321 142 37 chr3 1722792 1722954 -225801624 + HAL1 LINE L1 228 406 -2101 1996 123 0 14 chr3 1723402 1723714 -225800864 + AluSg SINE Alu 1 308 0 427 265 128 95 chr3 1723972 1724633 -225799945 + HAL1 LINE L1 1612 2310 -197 2075 128 0 19 chr3 1724633 1724945 -225799633 - AluSx SINE Alu -6 306 1 427 265 128 95 chr3 1724945 1725147 -225799431 + HAL1 LINE L1 2310 2504 -3 303 244 74 67 chr3 1725355 1725490 -225799088 + MIR SINE MIR 11 146 -116 601 331 79 64 chr3 1725593 1725986 -225798592 + LTR16C LTR ERVL 89 487 -4 192 111 0 0 chr3 1726789 1726825 -225797753 + (A)n Simple_repeat Simple_repeat 1 36 0 279 0 0 0 chr3 1727254 1727285 -225797293 + (TG)n Simple_repeat Simple_repeat 1 31 0 2652 245 126 13 chr3 1727657 1728825 -225795753 - L1ME2 LINE L1 -9 6155 4854 757 301 33 5 chr3 1729827 1730040 -225794538 + MIR SINE MIR 2 220 -42 21 0 0 0 chr3 1730097 1730118 -225794460 + AT_rich Low_complexity Low_complexity 1 21 0 378 159 35 7 chr3 1730189 1730334 -225794244 + GA-rich Low_complexity Low_complexity 1 149 0 2589 216 31 19 chr3 1730369 1730984 -225793594 - L1MB5 LINE L1 -8 6166 5545 * 2812 246 29 67 chr3 1730951 1732009 -225792569 - L1MB5 LINE L1 -1367 4779 3762 766 236 34 39 chr3 1732009 1732217 -225792361 + MER20 DNA MER1_type 13 219 0 1070 146 5 21 chr3 1732431 1732623 -225791955 + L1PB2 LINE L1 5956 6144 -7 242 298 0 0 chr3 1732873 1732930 -225791648 + L2 LINE L2 3230 3286 -27 22 35 0 0 chr3 1734221 1734250 -225790328 + AT_rich Low_complexity Low_complexity 1 29 0 375 267 74 93 chr3 1734349 1734619 -225789959 + L2 LINE L2 3043 3307 -6 261 220 57 14 chr3 1734899 1735040 -225789538 + (TA)n Simple_repeat Simple_repeat 2 148 0 1482 338 58 38 chr3 1736573 1737773 -225786805 + HERV16 LTR ERVL 1799 3021 -1975 897 328 77 32 chr3 1737898 1738572 -225786006 + HERV16 LTR ERVL 3735 4457 -1028 266 125 21 0 chr3 1738580 1738628 -225785950 + (TG)n Simple_repeat Simple_repeat 2 50 0 603 145 8 63 chr3 1738630 1739135 -225785443 + (TATATG)n Simple_repeat Simple_repeat 1 477 0 225 284 47 101 chr3 1740549 1740697 -225783881 + LTR16C LTR ERVL 352 491 0 310 277 0 80 chr3 1740722 1740859 -225783719 - MLT1H LTR MaLR 0 549 424 680 271 81 44 chr3 1740893 1741188 -225783390 - MLT1H LTR MaLR -243 306 1 327 288 220 11 chr3 1742525 1742716 -225781862 + MIR SINE MIR 13 243 -19 311 238 0 0 chr3 1743057 1743120 -225781458 - MER69 DNA AcHobo 0 2526 2464 252 0 0 0 chr3 1743262 1743290 -225781288 + (A)n Simple_repeat Simple_repeat 1 28 0 267 79 0 0 chr3 1743770 1743808 -225780770 + (TG)n Simple_repeat Simple_repeat 2 39 0 568 310 44 31 chr3 1743993 1744222 -225780356 + MIR SINE MIR 29 260 -2 1586 237 70 57 chr3 1744470 1745073 -225779505 - L1ME2 LINE L1 -5 6161 5567 203 0 0 36 chr3 1745073 1745101 -225779477 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 1484 201 3 3 chr3 1745111 1745395 -225779183 - AluJb SINE Alu -26 286 3 1586 237 70 57 chr3 1745395 1745760 -225778818 - L1ME2 LINE L1 -607 5559 5031 1915 76 29 11 chr3 1745760 1746036 -225778542 - L1PA11 LINE L1 0 6174 5894 1586 237 70 57 chr3 1746036 1746225 -225778353 - L1ME2 LINE L1 -1135 5031 4846 995 293 66 7 chr3 1746256 1746679 -225777899 - L1ME2 LINE L1 -1259 4887 4440 1956 327 64 1 chr3 1746707 1747454 -225777124 - L2 LINE L2 -1190 2124 1331 21 36 0 0 chr3 1747556 1747584 -225776994 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 1747606 1747630 -225776948 + AT_rich Low_complexity Low_complexity 1 24 0 185 170 21 43 chr3 1750483 1750530 -225774048 - MER5C DNA MER1_type 0 324 279 29 28 0 0 chr3 1751010 1751046 -225773532 + AT_rich Low_complexity Low_complexity 1 36 0 2128 90 0 4 chr3 1751113 1751421 -225773157 + AluSc SINE Alu 1 307 0 826 285 92 64 chr3 1751422 1752177 -225772401 - HAL1b LINE L1 -234 1114 323 210 91 0 0 chr3 1752177 1752210 -225772368 + (TG)n Simple_repeat Simple_repeat 2 34 0 826 285 92 64 chr3 1752210 1752429 -225772149 - HAL1b LINE L1 -1025 323 112 183 129 0 0 chr3 1753297 1753328 -225771250 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 635 331 20 36 chr3 1753463 1753711 -225770867 + MIR SINE MIR 16 259 -3 1269 27 0 0 chr3 1754018 1754167 -225770411 + L1PA3 LINE L1 6002 6150 -5 23 0 0 0 chr3 1754167 1754190 -225770388 + AT_rich Low_complexity Low_complexity 1 23 0 306 0 0 0 chr3 1754681 1754715 -225769863 + (CA)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chr3 1754714 1754743 -225769835 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 28 0 0 0 chr3 1754975 1755003 -225769575 + AT_rich Low_complexity Low_complexity 1 28 0 2327 56 0 0 chr3 1755095 1755381 -225769197 + AluY SINE Alu 2 287 -24 28 0 0 0 chr3 1755381 1755409 -225769169 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr3 1755963 1755991 -225768587 + AT_rich Low_complexity Low_complexity 1 28 0 2327 56 0 0 chr3 1756083 1756369 -225768209 + AluY SINE Alu 2 287 -24 28 0 0 0 chr3 1756369 1756397 -225768181 + AT_rich Low_complexity Low_complexity 1 28 0 254 228 60 75 chr3 1757316 1757540 -225767038 - L1MEd LINE L1 -4894 1225 1125 25 75 0 0 chr3 1757624 1757677 -225766901 + AT_rich Low_complexity Low_complexity 1 53 0 234 350 46 53 chr3 1757801 1758084 -225766494 - L1MEd LINE L1 -5343 776 496 2257 48 7 0 chr3 1759364 1759656 -225764922 + AluY SINE Alu 2 295 -16 2343 59 3 0 chr3 1759740 1760043 -225764535 + AluY SINE Alu 1 304 -7 1305 62 6 0 chr3 1760166 1760342 -225764236 + AluY SINE Alu 132 308 -3 22 56 0 0 chr3 1761180 1761216 -225763362 + AT_rich Low_complexity Low_complexity 1 36 0 404 371 9 0 chr3 1761222 1761338 -225763240 - L2 LINE L2 -8 3305 3189 226 209 15 15 chr3 1761834 1761901 -225762677 - L1ME4a LINE L1 -3 6118 6052 723 298 88 51 chr3 1761929 1762573 -225762005 - L1ME4a LINE L1 -139 5982 5315 208 338 27 0 chr3 1762959 1763033 -225761545 + L2 LINE L2 3194 3269 -3 2180 274 49 53 chr3 1763657 1764852 -225759726 + HAL1 LINE L1 1169 2359 -148 25 0 0 0 chr3 1764954 1764979 -225759599 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr3 1766044 1766072 -225758506 + AT_rich Low_complexity Low_complexity 1 28 0 248 319 11 32 chr3 1767528 1767622 -225756956 - MLT1K LTR MaLR -15 573 482 279 340 21 0 chr3 1768124 1768218 -225756360 + MIR SINE MIR 45 140 -68 349 303 328 5 chr3 1768331 1768526 -225756052 + MIR SINE MIR 2 259 -3 1482 163 0 105 chr3 1769007 1769339 -225755239 - AluJb SINE Alu -15 297 1 219 36 0 0 chr3 1769505 1769533 -225755045 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 193 324 6 6 chr3 1769747 1769836 -225754742 - MIR SINE MIR -100 108 19 21 57 0 0 chr3 1771787 1771822 -225752756 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr3 1772101 1772122 -225752456 + AT_rich Low_complexity Low_complexity 1 21 0 28695 121 76 9 chr3 1773765 1779523 -225745055 - L1PA7 LINE L1 -2 6152 12 218 105 26 0 chr3 1780137 1780175 -225744403 + (TAGA)n Simple_repeat Simple_repeat 2 40 0 283 264 72 64 chr3 1780307 1780432 -225744146 - MLT1K LTR MaLR -181 407 282 28 61 0 0 chr3 1781208 1781257 -225743321 + AT_rich Low_complexity Low_complexity 1 49 0 1528 211 13 3 chr3 1781449 1781753 -225742825 - 7SLRNA srpRNA srpRNA -13 307 1 299 332 45 10 chr3 1781760 1781962 -225742616 - L1MC4a LINE L1 -1923 5885 5677 6178 95 9 3 chr3 1782063 1783693 -225740885 + L1PA13 LINE L1 4516 6162 -1 246 278 133 0 chr3 1783813 1783903 -225740675 + MIR SINE MIR 110 211 -51 384 181 123 48 chr3 1785452 1785613 -225738965 + MER20 DNA MER1_type 2 219 0 29 28 0 0 chr3 1786181 1786217 -225738361 + AT_rich Low_complexity Low_complexity 1 36 0 387 0 0 0 chr3 1787194 1787237 -225737341 + (T)n Simple_repeat Simple_repeat 1 43 0 282 267 76 29 chr3 1787297 1787402 -225737176 + MIR SINE MIR 79 188 -74 24 0 0 0 chr3 1787677 1787701 -225736877 + AT_rich Low_complexity Low_complexity 1 24 0 1686 219 115 22 chr3 1787811 1788273 -225736305 + MLT1D LTR MaLR 1 505 0 2267 74 0 7 chr3 1788419 1788737 -225735841 - AluY SINE Alu 0 316 1 282 116 0 0 chr3 1790453 1790496 -225734082 + (TA)n Simple_repeat Simple_repeat 2 44 0 299 281 114 9 chr3 1790623 1790737 -225733841 - L2 LINE L2 0 3272 3147 600 260 201 43 chr3 1791344 1791736 -225732842 + LTR16A1 LTR ERVL 1 454 -3 291 292 28 0 chr3 1791741 1791813 -225732765 + L2 LINE L2 3196 3269 -3 22 35 0 0 chr3 1792109 1792138 -225732440 + AT_rich Low_complexity Low_complexity 1 29 0 210 143 0 0 chr3 1792968 1793003 -225731575 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 995 205 71 26 chr3 1793577 1793845 -225730733 + MER21B LTR ERV1 470 749 -114 401 300 202 5 chr3 1794256 1794623 -225729955 + HAL1 LINE L1 1373 1811 -696 24 32 0 0 chr3 1796759 1796790 -225727788 + AT_rich Low_complexity Low_complexity 1 31 0 196 333 0 13 chr3 1797435 1797510 -225727068 - MIR SINE MIR -21 241 168 181 323 15 0 chr3 1798164 1798229 -225726349 + L2 LINE L2 2171 2236 -1078 1915 139 4 0 chr3 1798234 1798507 -225726071 - MER1A DNA MER1_type -194 335 62 190 371 14 0 chr3 1798544 1798614 -225725964 + L2 LINE L2 2302 2372 -942 300 310 41 16 chr3 1799336 1799538 -225725040 - MLT1J LTR MaLR -1 510 241 310 252 126 17 chr3 1799658 1799777 -225724801 - MLT1J LTR MaLR -371 140 9 2188 132 0 3 chr3 1799953 1800264 -225724314 - AluSx SINE Alu 0 312 3 255 200 0 0 chr3 1800309 1800354 -225724224 - MIR SINE MIR -121 141 97 332 302 75 0 chr3 1800356 1800462 -225724116 + L3 LINE CR1 1463 1576 -1 369 336 69 18 chr3 1801348 1801492 -225723086 + MIR SINE MIR 10 170 -92 180 0 0 0 chr3 1801492 1801512 -225723066 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 369 336 69 18 chr3 1801512 1801584 -225722994 + MIR SINE MIR 170 237 -25 184 182 36 73 chr3 1801611 1801666 -225722912 - L3b LINE CR1 -115 1468 1416 641 293 5 40 chr3 1802026 1802248 -225722330 - MIR SINE MIR -40 222 9 21 43 0 0 chr3 1802823 1802846 -225721732 + AT_rich Low_complexity Low_complexity 1 23 0 2300 106 0 0 chr3 1803065 1803368 -225721210 - AluSx SINE Alu -7 305 3 974 258 57 8 chr3 1803409 1803657 -225720921 - MLT1E3 LTR MaLR -194 430 171 403 276 118 0 chr3 1803685 1803812 -225720766 - MLT1E3 LTR MaLR -505 149 8 2076 128 0 0 chr3 1804070 1804368 -225720210 - AluSg SINE Alu -12 298 1 1759 224 47 63 chr3 1805761 1806637 -225717941 - L1MCb LINE L1 -4852 844 333 679 266 5 18 chr3 1806636 1806854 -225717724 - L1MCb LINE L1 -5467 929 715 * 429 321 32 43 chr3 1807080 1807357 -225717221 - L1MCb LINE L1 -6031 365 92 281 297 31 78 chr3 1807369 1807497 -225717081 - MIR SINE MIR -124 138 17 322 311 87 6 chr3 1807579 1807740 -225716838 + L1ME4a LINE L1 5946 6119 -2 2005 114 20 7 chr3 1807745 1808043 -225716535 + AluSg SINE Alu 1 302 -8 8680 119 33 23 chr3 1808869 1810417 -225714161 - HERVH LTR ERV1 -5541 2172 460 481 99 0 0 chr3 1810397 1810468 -225714110 - HERVH LTR ERV1 -7642 71 1 * 1972 111 57 104 chr3 1810470 1810940 -225713638 - LTR7 LTR ERV1 -2 448 1 3162 95 32 2 chr3 1810940 1811043 -225713535 + L1PB1 LINE L1 5677 5775 -376 940 79 14 0 chr3 1811043 1811182 -225713396 + (TA)n Simple_repeat Simple_repeat 2 142 0 3162 95 32 2 chr3 1811182 1811539 -225713039 + L1PB1 LINE L1 5775 6151 0 1438 111 65 0 chr3 1811665 1811881 -225712697 + MER30 DNA MER1_type 1 230 0 1586 261 89 46 chr3 1811916 1812747 -225711831 - L1ME3A LINE L1 -16 6154 5288 283 296 70 12 chr3 1812794 1812966 -225711612 - L1ME3A LINE L1 -926 5220 5039 186 43 0 0 chr3 1813010 1813033 -225711545 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 420 262 40 24 chr3 1814279 1814405 -225710173 - MIR SINE MIR -74 188 61 1932 119 0 0 chr3 1814405 1814665 -225709913 + AluSq SINE Alu 21 280 -33 363 89 0 0 chr3 1814665 1814721 -225709857 + AluSp/q SINE Alu 245 300 -3 185 349 32 16 chr3 1814721 1814784 -225709794 - MIR SINE MIR -186 76 13 554 229 179 0 chr3 1814789 1814929 -225709649 - MER5A DNA MER1_type -1 188 24 210 190 177 76 chr3 1815125 1815204 -225709374 - L2 LINE L2 0 3313 3227 199 54 54 36 chr3 1815763 1815819 -225708759 + T-rich Low_complexity Low_complexity 6 62 0 23 0 0 0 chr3 1815961 1815984 -225708594 + AT_rich Low_complexity Low_complexity 1 23 0 258 237 51 17 chr3 1816029 1816088 -225708490 - MIR SINE MIR -161 101 41 1860 331 77 36 chr3 1816304 1817508 -225707070 + L2 LINE L2 11 1264 -2050 300 267 83 25 chr3 1818203 1818323 -225706255 - L1ME4a LINE L1 -48 6073 5947 1379 176 114 29 chr3 1819418 1819691 -225704887 - MER1B DNA MER1_type -43 296 1 21 36 0 0 chr3 1819855 1819883 -225704695 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr3 1819901 1819937 -225704641 + AT_rich Low_complexity Low_complexity 1 36 0 277 244 100 91 chr3 1820014 1820244 -225704334 - L1ME3A LINE L1 -154 6016 5785 299 333 37 9 chr3 1820357 1820465 -225704113 - L2 LINE L2 -20 3252 3142 986 262 136 40 chr3 1820699 1821149 -225703429 - MLT1H LTR MaLR -54 495 3 252 86 0 0 chr3 1821249 1821284 -225703294 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 865 195 6 18 chr3 1821507 1821676 -225702902 - FRAM SINE Alu -14 162 1 188 33 0 33 chr3 1821676 1821706 -225702872 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1491 213 0 11 chr3 1821711 1821997 -225702581 - AluJb SINE Alu -24 288 6 712 319 168 17 chr3 1822069 1822545 -225702033 - L2 LINE L2 -665 2649 2102 319 345 84 20 chr3 1822562 1823052 -225701526 - L1ME4a LINE L1 -297 5824 5304 746 216 155 0 chr3 1824727 1824921 -225699657 - MER58A DNA MER1_type 0 224 1 389 263 192 27 chr3 1824957 1825181 -225699397 - MIR SINE MIR 0 262 2 317 279 91 71 chr3 1825436 1825634 -225698944 + MIR SINE MIR 19 212 -50 202 182 0 0 chr3 1825684 1825717 -225698861 + (CA)n Simple_repeat Simple_repeat 2 34 0 206 336 173 0 chr3 1825839 1825943 -225698635 - L3b LINE CR1 -27 1556 1435 2605 103 16 0 chr3 1826418 1826787 -225697791 + THE1C LTR MaLR 1 375 0 313 286 24 0 chr3 1826928 1827012 -225697566 + L2 LINE L2 3222 3307 -6 508 361 47 29 chr3 1827043 1827384 -225697194 - LTR16C LTR ERVL -8 483 137 291 291 60 46 chr3 1828491 1828642 -225695936 + MIR SINE MIR 5 157 -105 229 218 11 35 chr3 1828704 1828791 -225695787 + (TAAA)n Simple_repeat Simple_repeat 1 85 0 384 308 63 6 chr3 1829198 1829357 -225695221 - MLT1F LTR MaLR -374 168 1 438 335 182 23 chr3 1829507 1829946 -225694632 - L2 LINE L2 -1 3312 2804 235 182 55 0 chr3 1830004 1830059 -225694519 - L2 LINE L2 -6 3307 3250 22 0 0 0 chr3 1830382 1830404 -225694174 + AT_rich Low_complexity Low_complexity 1 22 0 3518 142 39 29 chr3 1830404 1831092 -225693486 - L1MA7 LINE L1 0 6291 5597 324 283 75 12 chr3 1831655 1831828 -225692750 + MER113 DNA MER1_type? 34 217 -304 679 132 294 0 chr3 1832779 1832915 -225691663 - AluSc SINE Alu -7 302 127 291 301 0 32 chr3 1833178 1833271 -225691307 + MIR SINE MIR 78 167 -95 25 0 0 0 chr3 1833528 1833553 -225691025 + AT_rich Low_complexity Low_complexity 1 25 0 2532 64 0 0 chr3 1834153 1834451 -225690127 + AluY SINE Alu 1 298 -13 1038 163 0 37 chr3 1834651 1834841 -225689737 + FRAM SINE Alu 1 175 -1 544 305 58 36 chr3 1834912 1835135 -225689443 - MIR SINE MIR -27 235 8 197 286 0 0 chr3 1836656 1836705 -225687873 + MIR SINE MIR 2 50 -212 1396 167 116 25 chr3 1836728 1837004 -225687574 - AluSx SINE Alu -6 306 6 2433 135 3 3 chr3 1837727 1838090 -225686488 + THE1B LTR MaLR 2 364 0 231 239 149 30 chr3 1838157 1838224 -225686354 + MIR SINE MIR 112 186 -76 23 33 0 0 chr3 1839985 1840015 -225684563 + AT_rich Low_complexity Low_complexity 1 30 0 193 333 0 13 chr3 1840660 1840735 -225683843 - MIR SINE MIR -21 241 168 197 297 247 18 chr3 1840915 1841296 -225683282 + L2 LINE L2 1528 1995 -1319 180 323 15 0 chr3 1841389 1841454 -225683124 + L2 LINE L2 2171 2236 -1078 1793 143 4 0 chr3 1841459 1841732 -225682846 - MER1A DNA MER1_type -194 335 62 186 371 14 0 chr3 1841769 1841839 -225682739 + L2 LINE L2 2302 2372 -942 255 315 33 10 chr3 1842589 1842763 -225681815 - MLT1J1 LTR MaLR -30 481 241 268 252 126 17 chr3 1842883 1843002 -225681576 - MLT1J LTR MaLR -371 140 9 2161 139 0 3 chr3 1843172 1843481 -225681097 - AluSx SINE Alu -2 310 3 252 200 0 0 chr3 1843526 1843571 -225681007 - MIR SINE MIR -121 141 97 327 302 75 0 chr3 1843573 1843679 -225680899 + L3 LINE CR1 1463 1576 -1 367 336 69 18 chr3 1844565 1844709 -225679869 + MIR SINE MIR 10 170 -92 180 0 0 0 chr3 1844709 1844729 -225679849 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 367 336 69 18 chr3 1844729 1844801 -225679777 + MIR SINE MIR 170 237 -25 184 182 36 73 chr3 1844828 1844883 -225679695 - L3b LINE CR1 -115 1468 1416 641 293 5 40 chr3 1845247 1845469 -225679109 - MIR SINE MIR -40 222 9 23 0 0 0 chr3 1846044 1846067 -225678511 + AT_rich Low_complexity Low_complexity 1 23 0 2369 107 0 0 chr3 1846286 1846596 -225677982 - AluSx SINE Alu -2 310 1 872 263 38 8 chr3 1846647 1846883 -225677695 - MLT1E3 LTR MaLR -211 413 171 361 276 118 0 chr3 1846911 1847038 -225677540 - MLT1E3 LTR MaLR -505 149 8 1805 118 92 0 chr3 1847296 1847568 -225677010 - AluSg SINE Alu -12 298 2 243 0 0 0 chr3 1847815 1847842 -225676736 + (CA)n Simple_repeat Simple_repeat 2 28 0 1747 124 70 4 chr3 1848813 1849086 -225675492 - AluSx SINE Alu -21 291 1 21 36 0 0 chr3 1849094 1849122 -225675456 + AT_rich Low_complexity Low_complexity 1 28 0 2206 96 3 0 chr3 1849549 1849864 -225674714 + AluSq SINE Alu 1 313 0 1870 299 120 15 chr3 1850363 1851366 -225673212 - L2 LINE L2 -4 3309 2185 195 318 0 0 chr3 1851365 1851428 -225673150 - MIR SINE MIR -16 246 184 * 3250 86 8 72 chr3 1852014 1852029 -225672549 + L1M1 LINE L1 3535 3549 -4016 3096 57 0 86 chr3 1852029 1852507 -225672071 - L1PA7 LINE L1 0 6154 5718 3250 86 8 72 chr3 1852507 1853065 -225671513 + L1M1 LINE L1 3549 4073 -3492 726 260 29 6 chr3 1853068 1853241 -225671337 - MER20 DNA MER1_type -42 177 1 2046 169 57 33 chr3 1853400 1853856 -225670722 + MER41B LTR ERV1 113 579 -56 262 198 0 99 chr3 1853833 1853914 -225670664 + MER66A LTR ERV1 395 467 -11 * 2388 68 0 10 chr3 1855494 1855804 -225668774 - AluY SINE Alu -3 308 2 822 259 0 0 chr3 1855822 1856011 -225668567 + MER5A DNA MER1_type 1 189 0 692 134 0 0 chr3 1856346 1856458 -225668120 - MER41A LTR ERV1 0 554 443 993 74 0 15 chr3 1856564 1856699 -225667879 - AluSq/x SINE Alu -179 133 1 21 36 0 0 chr3 1857136 1857164 -225667414 + AT_rich Low_complexity Low_complexity 1 28 0 1747 124 70 4 chr3 1857172 1857445 -225667133 + AluSx SINE Alu 1 291 -21 1478 95 7 62 chr3 1858176 1858481 -225666097 - AluY SINE Alu -23 288 1 3215 126 35 14 chr3 1858481 1859507 -225665071 - L1PBa LINE L1 -5031 1832 636 980 159 20 0 chr3 1859509 1859704 -225664874 - L1PBa LINE L1 -6663 200 2 30 27 0 0 chr3 1859807 1859844 -225664734 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 1861061 1861083 -225663495 + AT_rich Low_complexity Low_complexity 1 22 0 278 340 60 0 chr3 1861108 1861208 -225663370 + MIR SINE MIR 57 162 -100 2219 124 0 3 chr3 1861521 1861828 -225662750 - AluSx SINE Alu -6 306 1 340 272 99 74 chr3 1862155 1862438 -225662140 + L1ME4a LINE L1 5611 5900 -221 247 130 0 0 chr3 1862725 1862771 -225661807 + MER45C DNA AcHobo 95 140 -813 4362 206 105 36 chr3 1862915 1864187 -225660391 + MER45R DNA AcHobo 222 1580 -1 236 356 22 11 chr3 1864640 1864730 -225659848 + L2 LINE L2 3223 3313 0 235 238 138 0 chr3 1865385 1865465 -225659113 - L1MC5 LINE L1 -397 7564 7474 360 42 0 0 chr3 1865483 1865531 -225659047 - L1PA3 LINE L1 -3 6152 6105 1120 47 0 0 chr3 1865531 1865679 -225658899 + L1PA4 LINE L1 5930 6077 -78 2017 149 10 0 chr3 1865814 1866122 -225658456 + AluSx SINE Alu 1 311 -1 31 82 0 0 chr3 1869035 1869108 -225655470 + AT_rich Low_complexity Low_complexity 1 73 0 270 306 189 0 chr3 1870198 1870309 -225654269 - MIR SINE MIR -57 151 20 181 333 30 20 chr3 1870335 1870434 -225654144 + MER5A DNA MER1_type 34 133 -56 226 273 0 0 chr3 1873752 1873807 -225650771 + L2 LINE L2 3254 3308 -5 263 344 164 0 chr3 1873865 1873987 -225650591 - MIR SINE MIR -14 248 107 282 239 182 115 chr3 1874479 1874633 -225649945 + MER58A DNA MER1_type 1 174 -2246 1120 129 31 26 chr3 1874633 1874827 -225649751 + L1PA16 LINE L1 5962 6156 -10 282 239 182 115 chr3 1874827 1874881 -225649697 + MER58A DNA MER1_type 174 223 -1 640 272 28 14 chr3 1875832 1876049 -225648529 - MER58A DNA MER1_type -3 221 2 22 0 0 0 chr3 1877341 1877363 -225647215 + AT_rich Low_complexity Low_complexity 1 22 0 2016 181 17 67 chr3 1878791 1879267 -225645311 - MER66A LTR ERV1 0 478 27 665 152 29 14 chr3 1879339 1879477 -225645101 + L1MB1 LINE L1 6023 6162 -6 316 316 0 50 chr3 1879866 1880005 -225644573 + L1MC4 LINE L1 6571 6702 -1340 * 338 310 20 0 chr3 1879984 1880084 -225644494 - L1MC4 LINE L1 -1339 6703 6602 334 291 122 35 chr3 1881276 1881506 -225643072 + MIR SINE MIR 1 250 -12 38553 34 30 2 chr3 1882806 1888817 -225635761 + L1PA2 LINE L1 1 6155 0 23 0 0 0 chr3 1889155 1889178 -225635400 + AT_rich Low_complexity Low_complexity 1 23 0 1759 203 30 86 chr3 1890483 1891006 -225633572 - MLT1D LTR MaLR -8 618 1 310 259 99 15 chr3 1891014 1891145 -225633433 - MIR SINE MIR -15 247 106 392 287 64 35 chr3 1891650 1891869 -225632709 + MIR SINE MIR 20 245 -17 270 339 68 41 chr3 1892331 1892552 -225632026 - L2 LINE L2 -2 3311 3085 189 277 21 0 chr3 1892617 1892664 -225631914 - L2 LINE L2 -342 2972 2925 406 289 87 0 chr3 1894974 1895078 -225629500 - L2 LINE L2 -2 3270 3158 216 350 82 0 chr3 1895571 1895668 -225628910 + MIR3 SINE MIR 56 160 -48 186 304 10 69 chr3 1898209 1898311 -225626267 - MIR3 SINE MIR -39 169 74 238 333 24 0 chr3 1899070 1899154 -225625424 - MER81 DNA DNA -22 92 7 326 297 84 19 chr3 1899216 1899371 -225625207 + MIR SINE MIR 24 188 -74 1313 258 58 8 chr3 1900126 1900502 -225624076 + LTR16C LTR ERVL 97 491 0 624 217 0 0 chr3 1902209 1902324 -225622254 + AluJo SINE Alu 1 115 -187 626 188 0 0 chr3 1902324 1902459 -225622119 + AluJo SINE Alu 184 318 0 729 316 25 8 chr3 1903119 1903356 -225621222 - MIR SINE MIR 0 262 22 184 379 11 0 chr3 1903847 1903934 -225620644 + MIR SINE MIR 20 107 -155 304 0 87 0 chr3 1904436 1904482 -225620096 + T-rich Low_complexity Low_complexity 2 51 0 238 164 16 16 chr3 1905343 1905404 -225619174 + (CATATA)n Simple_repeat Simple_repeat 5 65 0 2114 105 3 3 chr3 1905476 1905762 -225618816 + AluSx SINE Alu 1 286 -26 198 307 92 43 chr3 1905965 1906126 -225618452 - MIR SINE MIR -68 140 2 375 277 44 25 chr3 1906176 1906335 -225618243 - MER103 DNA DNA 0 166 5 580 291 20 35 chr3 1906527 1906726 -225617852 + MIR SINE MIR 10 205 -57 386 259 32 138 chr3 1906930 1907177 -225617401 - MER102b DNA MER1_type -18 323 103 257 360 93 0 chr3 1907252 1907391 -225617187 - L3 LINE CR1 -1 1576 1425 491 297 24 38 chr3 1907407 1907616 -225616962 - MIR SINE MIR -53 209 4 * 1761 281 8 58 chr3 1907616 1908251 -225616327 - L3 LINE CR1 -180 1397 795 226 210 32 0 chr3 1908582 1908644 -225615934 + (TA)n Simple_repeat Simple_repeat 1 64 0 504 267 72 59 chr3 1908802 1909023 -225615555 + MER58A DNA MER1_type 1 224 0 946 251 127 0 chr3 1909077 1909344 -225615234 + MER110 LTR ERV1 46 346 -145 2566 149 9 41 chr3 1909351 1909794 -225614784 - MER57B LTR ERV1 -5 429 1 421 300 15 0 chr3 1909808 1909938 -225614640 + MER110 LTR ERV1 360 491 0 332 321 9 0 chr3 1910230 1910342 -225614236 + MIR3 SINE MIR 95 207 -1 1057 220 5 5 chr3 1912375 1912575 -225612003 - MER58A DNA MER1_type -24 200 1 249 209 0 95 chr3 1912659 1912764 -225611814 + L1MC4 LINE L1 6609 6703 -1339 288 249 44 88 chr3 1912799 1913004 -225611574 - MER46C DNA MER2_type -142 196 1 489 325 5 26 chr3 1913610 1913804 -225610774 - MIR3 SINE MIR 0 208 19 2023 141 3 6 chr3 1914062 1914374 -225610204 + AluSq SINE Alu 3 313 0 1246 314 38 7 chr3 1914519 1914940 -225609638 - MER74C LTR ERVL -17 443 10 292 380 29 37 chr3 1915003 1915248 -225609330 - MLT1K LTR MaLR -306 282 40 283 298 58 8 chr3 1915295 1915416 -225609162 + MER94 DNA DNA 8 134 0 199 346 71 50 chr3 1915586 1915768 -225608810 - L2 LINE L2 -501 2813 2628 * 334 377 117 20 chr3 1915761 1916162 -225608416 + L2 LINE L2 2536 2975 -339 236 222 0 16 chr3 1916497 1916560 -225608018 + (TAAA)n Simple_repeat Simple_repeat 1 62 0 25 0 0 0 chr3 1916842 1916867 -225607711 + AT_rich Low_complexity Low_complexity 1 25 0 282 287 30 20 chr3 1916993 1917094 -225607484 - MLT1H LTR MaLR -447 102 1 25 31 0 0 chr3 1917588 1917620 -225606958 + AT_rich Low_complexity Low_complexity 1 32 0 29 84 0 0 chr3 1918082 1918153 -225606425 + AT_rich Low_complexity Low_complexity 1 71 0 23 0 0 0 chr3 1918201 1918224 -225606354 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3 1918332 1918360 -225606218 + AT_rich Low_complexity Low_complexity 1 28 0 1006 289 86 42 chr3 1918410 1918936 -225605642 - MLT1H LTR MaLR 0 549 1 1662 220 77 46 chr3 1920460 1920942 -225603636 + MLT1D LTR MaLR 3 499 -6 271 234 404 0 chr3 1920948 1921042 -225603536 + L2 LINE L2 3141 3272 0 264 242 200 11 chr3 1921243 1921338 -225603240 + L2 LINE L2 3200 3312 -1 261 277 69 54 chr3 1921348 1921478 -225603100 - L2 LINE L2 -1 3271 3140 1943 134 3 3 chr3 1921877 1922203 -225602375 - AluSx SINE Alu 0 328 3 24 0 0 0 chr3 1922208 1922232 -225602346 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr3 1922475 1922512 -225602066 + AT_rich Low_complexity Low_complexity 1 37 0 2350 96 3 0 chr3 1924197 1924509 -225600069 - AluSp SINE Alu 0 313 1 825 330 38 33 chr3 1924559 1925098 -225599480 + L2 LINE L2 2772 3311 -2 23 0 0 0 chr3 1925246 1925269 -225599309 + AT_rich Low_complexity Low_complexity 1 23 0 1682 170 26 13 chr3 1926358 1926782 -225597796 - AluJo SINE Alu 0 428 1 6715 105 13 35 chr3 1926803 1926959 -225597619 - L1MA2 LINE L1 0 6304 6146 392 36 0 18 chr3 1926959 1927014 -225597564 + (TTTA)n Simple_repeat Simple_repeat 3 56 0 1946 127 4 0 chr3 1927016 1927283 -225597295 - AluSx SINE Alu -44 268 1 6715 105 13 35 chr3 1927283 1928317 -225596261 - L1MA2 LINE L1 -159 6145 5137 813 217 0 30 chr3 1928344 1928510 -225596068 - FRAM SINE Alu -22 154 1 281 188 0 0 chr3 1928516 1928580 -225595998 + L1MC4 LINE L1 6640 6703 -1339 322 218 33 0 chr3 1928610 1928701 -225595877 - L1MC4 LINE L1 -1339 6983 1996 198 209 0 0 chr3 1928704 1928747 -225595831 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 296 250 181 0 chr3 1928747 1928819 -225595759 - FLAM_A SINE Alu -16 117 33 412 264 0 0 chr3 1928952 1929039 -225595539 - Tigger7 DNA MER2_type -12 2575 2489 * 1234 160 20 116 chr3 1929037 1929331 -225595247 - Tigger7 DNA MER2_type -2220 267 2 24 77 0 0 chr3 1929370 1929422 -225595156 + AT_rich Low_complexity Low_complexity 1 52 0 444 237 21 0 chr3 1929465 1929562 -225595016 - MER5B DNA MER1_type -3 175 77 2150 115 0 0 chr3 1929606 1929885 -225594693 - AluSg SINE Alu -31 279 1 1073 242 81 36 chr3 1929895 1930111 -225594467 - L1ME3A LINE L1 0 6170 5965 216 0 0 0 chr3 1930111 1930135 -225594443 + (TA)n Simple_repeat Simple_repeat 1 24 0 1073 242 81 36 chr3 1930135 1930336 -225594242 - L1ME3A LINE L1 -205 5965 5734 194 258 91 45 chr3 1930341 1930407 -225594171 + MER5B DNA MER1_type 108 176 -2 22 35 0 0 chr3 1930428 1930457 -225594121 + AT_rich Low_complexity Low_complexity 1 29 0 1647 198 68 3 chr3 1930561 1930929 -225593649 - MER63D DNA MER1_type -4 1056 665 658 201 201 73 chr3 1930948 1931015 -225593563 - MER63D DNA MER1_type -628 433 376 212 0 0 35 chr3 1931015 1931044 -225593534 + (TA)n Simple_repeat Simple_repeat 1 28 0 658 201 201 73 chr3 1931044 1931319 -225593259 - MER63D DNA MER1_type -685 376 47 300 27 0 0 chr3 1931516 1931536 -225593042 + (CA)n Simple_repeat Simple_repeat 1 57 0 300 27 0 0 chr3 1931536 1931573 -225593005 + (CA)n Simple_repeat Simple_repeat 2 38 0 1597 169 4 22 chr3 1933204 1933482 -225591096 - AluJo SINE Alu -38 274 2 735 288 113 14 chr3 1933747 1934265 -225590313 + MLT2E LTR ERVL 25 626 -2 414 321 81 43 chr3 1935375 1935584 -225588994 - MIR SINE MIR 0 262 46 291 290 43 73 chr3 1935994 1936133 -225588445 - MIR SINE MIR -28 180 45 2975 83 0 2 chr3 1936434 1936831 -225587747 + L1PA8 LINE L1 5777 6172 0 207 0 0 0 chr3 1936917 1936940 -225587638 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 217 221 118 0 chr3 1936944 1937012 -225587566 + MIR SINE MIR 47 122 -140 521 237 44 7 chr3 1937406 1937541 -225587037 - MIR SINE MIR -111 151 12 1976 134 16 3 chr3 1937667 1937974 -225586604 - AluSx SINE Alu -1 311 1 560 284 126 48 chr3 1937994 1938265 -225586313 - LTR16C LTR ERVL 0 491 200 300 254 24 79 chr3 1938375 1938501 -225586077 - MIR SINE MIR -99 163 45 206 310 43 70 chr3 1938785 1938972 -225585606 - L2 LINE L2 -407 2907 2726 2278 113 0 7 chr3 1939720 1940030 -225584548 + AluSx SINE Alu 2 309 -3 434 341 74 9 chr3 1940529 1940746 -225583832 + MIR SINE MIR 18 248 -14 634 209 130 6 chr3 1941197 1941374 -225583204 - MER20 DNA MER1_type -20 199 1 1728 176 3 0 chr3 1941384 1941673 -225582905 - AluJo SINE Alu -22 290 1 249 274 27 0 chr3 1942143 1942216 -225582362 - MIR SINE MIR -6 256 182 351 0 0 0 chr3 1942387 1942426 -225582152 + (TG)n Simple_repeat Simple_repeat 2 40 0 619 256 45 25 chr3 1943118 1943317 -225581261 - MIR SINE MIR -14 248 46 419 321 25 6 chr3 1943573 1943732 -225580846 + MIR3 SINE MIR 45 206 -2 229 257 86 29 chr3 1944468 1944538 -225580040 + L2 LINE L2 3232 3305 -8 249 316 89 0 chr3 1944540 1944619 -225579959 - L2 LINE L2 -37 3235 3150 1580 176 48 0 chr3 1944721 1945011 -225579567 + AluJb SINE Alu 1 304 -8 479 325 79 95 chr3 1945184 1945919 -225578659 - L2 LINE L2 -374 2940 2218 1685 118 33 0 chr3 1945940 1946185 -225578393 + AluSp SINE Alu 39 291 -22 667 276 98 33 chr3 1946588 1947188 -225577390 + L1MC4 LINE L1 7186 7681 -127 * 789 273 28 22 chr3 1947179 1947611 -225576967 - L1MCc LINE L1 -4463 2520 2138 2350 106 0 0 chr3 1947665 1947967 -225576611 - AluSx SINE Alu -10 302 1 1630 263 89 30 chr3 1948014 1948678 -225575900 - L1MCc LINE L1 -4894 1529 998 2120 184 26 26 chr3 1948678 1949102 -225575476 - MSTB LTR MaLR -2 424 1 1630 263 89 30 chr3 1949102 1949284 -225575294 - L1MCc LINE L1 -5425 998 828 388 266 132 60 chr3 1949534 1949898 -225574680 - L1MCc LINE L1 -6011 412 23 228 213 0 0 chr3 1949947 1950008 -225574570 + GA-rich Low_complexity Low_complexity 2 62 0 211 374 84 7 chr3 1950490 1950645 -225573933 + MIR SINE MIR 46 212 -50 26 30 0 0 chr3 1953131 1953164 -225571414 + AT_rich Low_complexity Low_complexity 1 33 0 1925 262 59 23 chr3 1953462 1954034 -225570544 - MLT1E LTR MaLR 0 593 1 27 29 0 0 chr3 1954666 1954700 -225569878 + AT_rich Low_complexity Low_complexity 1 34 0 236 366 0 0 chr3 1955163 1955245 -225569333 - Charlie1 DNA MER1_type -2679 82 1 196 231 0 19 chr3 1955360 1955412 -225569166 + MIR SINE MIR 180 230 -32 530 253 222 0 chr3 1955440 1955634 -225568944 + MIR SINE MIR 5 241 -21 394 267 298 0 chr3 1957421 1957552 -225567026 - MER45A DNA AcHobo -8 170 1 284 0 28 0 chr3 1958808 1958844 -225565734 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 382 237 21 0 chr3 1959461 1959554 -225565024 + MER117 DNA MER1_type 68 162 -35 273 373 55 39 chr3 1959602 1959721 -225564857 - MIR3 SINE MIR -53 155 31 1464 163 22 117 chr3 1959721 1960133 -225564445 - MLT1A2 LTR MaLR 0 374 2 273 373 55 39 chr3 1960133 1960165 -225564413 - MIR3 SINE MIR -177 31 1 320 235 20 71 chr3 1960818 1960916 -225563662 + MER21B LTR ERV1 12 104 -759 1900 250 120 56 chr3 1960917 1961665 -225562913 + MER21B LTR ERV1 20 815 -48 213 341 32 32 chr3 1962058 1962181 -225562397 + L2 LINE L2 2933 3055 -217 523 306 36 39 chr3 1963090 1963331 -225561247 + MIR SINE MIR 23 262 0 387 262 16 8 chr3 1963576 1963702 -225560876 - L1ME2 LINE L1 0 6164 6038 237 208 57 0 chr3 1963757 1963810 -225560768 - U6 snRNA snRNA -28 79 24 486 151 151 129 chr3 1964346 1964571 -225560007 - MER106A DNA MER1_type -6 230 1 2352 224 20 27 chr3 1964613 1965175 -225559403 + MER74A LTR ERVL 1 558 0 23 0 0 0 chr3 1965665 1965688 -225558890 + AT_rich Low_complexity Low_complexity 1 23 0 271 231 66 55 chr3 1966235 1966326 -225558252 + L2 LINE L2 3221 3312 -1 285 326 0 21 chr3 1966531 1966626 -225557952 - L2 LINE L2 -2 3311 3219 389 232 125 9 chr3 1967448 1967560 -225557018 + MIR SINE MIR 74 198 -64 249 244 58 35 chr3 1968004 1968090 -225556488 - MER103 DNA DNA -10 156 69 1999 149 10 0 chr3 1968206 1968514 -225556064 + AluSq SINE Alu 1 311 -2 1347 237 47 60 chr3 1968539 1968940 -225555638 + MLT1C LTR MaLR 6 402 -65 1880 173 0 3 chr3 1968940 1969246 -225555332 - AluJb SINE Alu -7 305 1 1347 237 47 60 chr3 1969246 1969312 -225555266 + MLT1C LTR MaLR 402 467 0 1551 174 87 0 chr3 1969835 1970100 -225554478 - AluSx SINE Alu -24 288 1 1679 168 30 16 chr3 1970689 1970866 -225553712 - AluJb SINE Alu -4 308 124 333 0 0 0 chr3 1970866 1970903 -225553675 + (TG)n Simple_repeat Simple_repeat 2 38 0 1679 168 30 16 chr3 1970903 1971029 -225553549 - AluJb SINE Alu -188 124 1 340 272 99 74 chr3 1971361 1971644 -225552934 + L1ME4a LINE L1 5611 5900 -221 2391 46 0 10 chr3 1972018 1972359 -225552219 + AluY SINE Alu 1 311 0 1914 147 47 26 chr3 1973534 1973875 -225550703 + MER7A DNA MER2_type 1 346 0 1708 215 52 48 chr3 1974619 1975122 -225549456 + MLT1D LTR MaLR 1 505 0 846 204 25 0 chr3 1975386 1975582 -225548996 - LTR37A LTR ERV1 -8 418 218 284 135 0 0 chr3 1975585 1975637 -225548941 + L1MB8 LINE L1 6127 6178 0 346 281 31 62 chr3 1975637 1975829 -225548749 - LTR37A LTR ERV1 -186 240 55 2326 291 105 32 chr3 1975909 1977550 -225547028 + L2 LINE L2 1266 3313 0 22 0 0 0 chr3 1977550 1977572 -225547006 + AT_rich Low_complexity Low_complexity 1 22 0 220 321 44 57 chr3 1978110 1978269 -225546309 + L2 LINE L2 2934 3090 -182 713 333 17 8 chr3 1978357 1978597 -225545981 + MIR SINE MIR 3 244 -18 280 100 0 50 chr3 1980110 1980170 -225544408 + (GGGAA)n Simple_repeat Simple_repeat 4 60 0 318 266 53 21 chr3 1980392 1980486 -225544092 + MIR SINE MIR 28 124 -138 1262 249 34 25 chr3 1980486 1980811 -225543767 - MER45C DNA AcHobo 0 953 626 540 141 12 0 chr3 1982028 1982113 -225542465 - AluJ/FLAM SINE Alu -226 86 1 313 301 49 42 chr3 1982148 1982291 -225542287 + L1MC4 LINE L1 6559 6702 -1340 1210 254 90 95 chr3 1983234 1984056 -225540522 - HAL1b LINE L1 0 1348 524 2483 81 0 3 chr3 1984056 1984365 -225540213 - AluSq SINE Alu -5 308 1 1210 254 90 95 chr3 1984365 1984529 -225540049 - HAL1b LINE L1 -824 524 361 1396 196 28 35 chr3 1984529 1984814 -225539764 - AluJo SINE Alu -19 283 1 1210 254 90 95 chr3 1984814 1985098 -225539480 - HAL1b LINE L1 -987 361 83 291 353 0 17 chr3 1986360 1986476 -225538102 - MIR SINE MIR -62 146 33 276 367 39 8 chr3 1986585 1986713 -225537865 + MIR3 SINE MIR 7 138 -70 200 83 0 28 chr3 1986713 1986749 -225537829 + (ATG)n Simple_repeat Simple_repeat 2 36 0 21 36 0 0 chr3 1986799 1986827 -225537751 + AT_rich Low_complexity Low_complexity 1 28 0 421 251 127 59 chr3 1987166 1987644 -225536934 - MER34B LTR ERV1 0 565 6 322 261 12 0 chr3 1988349 1988443 -225536135 + L1MC4 LINE L1 6443 6545 -1458 525 277 63 29 chr3 1988505 1988607 -225535971 + L1MC4 LINE L1 6716 6813 -1229 203 0 0 36 chr3 1988607 1988635 -225535943 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 525 277 63 29 chr3 1988635 1988770 -225535808 + L1MC4 LINE L1 6813 6961 -1081 480 258 42 42 chr3 1988894 1989084 -225535494 + L1MC4a LINE L1 7180 7369 -439 601 233 114 52 chr3 1989355 1989489 -225535089 + L1MC4 LINE L1 7426 7550 -324 1459 198 50 3 chr3 1989489 1989787 -225534791 + AluJb SINE Alu 1 312 0 601 233 114 52 chr3 1989787 1989829 -225534749 + L1MC4 LINE L1 7550 7588 -286 1592 177 69 0 chr3 1989829 1990117 -225534461 + AluJo SINE Alu 1 308 -4 601 233 114 52 chr3 1990117 1990344 -225534234 + L1MC4 LINE L1 7588 7873 -1 603 236 15 64 chr3 1990647 1990850 -225533728 - L1ME3 LINE L1 -30 6132 5940 210 67 67 0 chr3 1990904 1990949 -225533629 + GA-rich Low_complexity Low_complexity 1 48 0 247 111 19 19 chr3 1990977 1991031 -225533547 + (GAAAA)n Simple_repeat Simple_repeat 4 57 0 1305 99 42 0 chr3 1992459 1992651 -225531927 - L1PA13 LINE L1 -1 6162 5963 21 0 0 0 chr3 1992826 1992847 -225531731 + AT_rich Low_complexity Low_complexity 1 21 0 353 250 46 46 chr3 1992997 1993105 -225531473 + MIR3 SINE MIR 54 161 -47 209 393 14 48 chr3 1993639 1993784 -225530794 - MIR SINE MIR -73 189 50 237 209 233 12 chr3 1993803 1993889 -225530689 - MER5A DNA MER1_type -8 181 77 2274 151 0 34 chr3 1993890 1994327 -225530251 + L1MA6 LINE L1 5878 6299 -1 213 94 0 0 chr3 1994425 1994457 -225530121 + (CA)n Simple_repeat Simple_repeat 1 32 0 2153 122 7 7 chr3 1994499 1994803 -225529775 - AluSx SINE Alu -8 304 1 831 167 0 0 chr3 1995803 1995935 -225528643 - AluSq/x SINE Alu -180 132 1 1209 245 42 49 chr3 1996115 1996597 -225527981 + MER39 LTR ERV1 1 687 -20 263 203 14 0 chr3 1998766 1998835 -225525743 + (CATA)n Simple_repeat Simple_repeat 3 72 0 213 363 24 24 chr3 1999933 2000101 -225524477 + MIR SINE MIR 3 170 -92 403 344 42 47 chr3 2000340 2000532 -225524046 - MIR SINE MIR -52 210 20 889 197 57 0 chr3 2000759 2000952 -225523626 + LTR16A1 LTR ERVL 254 457 0 224 295 152 0 chr3 2001390 2001495 -225523083 + MIR3 SINE MIR 63 183 -25 768 256 67 0 chr3 2002257 2002452 -225522126 - MIR SINE MIR -27 235 28 2483 69 0 3 chr3 2003210 2003515 -225521063 + AluSg SINE Alu 1 304 -6 276 340 60 0 chr3 2003828 2003928 -225520650 - MIR SINE MIR -100 162 57 22 0 0 0 chr3 2003953 2003975 -225520603 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr3 2005192 2005229 -225519349 + AT_rich Low_complexity Low_complexity 1 37 0 1037 159 20 0 chr3 2005332 2005527 -225519051 + L1PB1 LINE L1 2 200 -6663 12330 130 86 15 chr3 2005529 2006557 -225518021 + L1PB1 LINE L1 636 1590 -5272 2357 87 0 3 chr3 2006557 2006855 -225517723 + AluY SINE Alu 3 299 -12 12330 130 86 15 chr3 2006855 2008600 -225515978 + L1PB1 LINE L1 1590 3605 -3257 1139 231 8 0 chr3 2008598 2008866 -225515712 + L1PB1 LINE L1 3907 4176 -2686 * 5570 187 3 5 chr3 2008854 2010470 -225514108 + L1PB1 LINE L1 4785 6397 -470 1704 110 54 156 chr3 2010495 2010994 -225513584 - LTR7 LTR ERV1 -2 448 1 4585 59 5 10 chr3 2010994 2011605 -225512973 - HERVH LTR ERV1 0 7713 7106 1027 136 6 12 chr3 2011597 2011759 -225512819 - HERVH LTR ERV1 -4061 3652 3492 * 964 127 7 0 chr3 2011749 2011899 -225512679 - HERVH LTR ERV1 -4423 3290 3140 * 13507 133 24 23 chr3 2011878 2014326 -225510252 - HERVH LTR ERV1 -4718 2995 437 505 84 0 0 chr3 2014306 2014377 -225510201 - HERVH LTR ERV1 -7642 71 1 * 1958 113 57 104 chr3 2014379 2014849 -225509729 - LTR7 LTR ERV1 -2 448 1 3094 101 28 7 chr3 2014849 2014952 -225509626 + L1PB1 LINE L1 6393 6492 -375 1038 39 29 15 chr3 2014952 2015161 -225509417 + (TA)n Simple_repeat Simple_repeat 1 212 0 3094 101 28 7 chr3 2015161 2015518 -225509060 + L1PB1 LINE L1 6492 6867 0 1438 111 65 0 chr3 2015644 2015860 -225508718 + MER30 DNA MER1_type 1 230 0 1567 262 89 46 chr3 2015895 2016726 -225507852 - L1ME3A LINE L1 -16 6154 5288 296 291 70 12 chr3 2016773 2016945 -225507633 - L1ME3A LINE L1 -926 5220 5039 186 43 0 0 chr3 2016989 2017012 -225507566 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 420 262 40 24 chr3 2018256 2018382 -225506196 - MIR SINE MIR -74 188 61 1964 115 0 0 chr3 2018382 2018642 -225505936 + AluSq SINE Alu 21 280 -33 363 89 0 0 chr3 2018642 2018698 -225505880 + AluSp/q SINE Alu 245 300 -3 185 349 32 16 chr3 2018698 2018761 -225505817 - MIR SINE MIR -186 76 13 554 229 179 0 chr3 2018766 2018906 -225505672 - MER5A DNA MER1_type -1 188 24 210 190 177 76 chr3 2019102 2019181 -225505397 - L2 LINE L2 0 3313 3227 199 54 54 36 chr3 2019738 2019794 -225504784 + T-rich Low_complexity Low_complexity 6 62 0 23 0 0 0 chr3 2019936 2019959 -225504619 + AT_rich Low_complexity Low_complexity 1 23 0 244 268 0 18 chr3 2020004 2020060 -225504518 - MIR SINE MIR -161 101 47 2048 332 60 34 chr3 2020279 2021502 -225503076 + L2 LINE L2 11 1264 -2050 300 267 83 25 chr3 2022197 2022317 -225502261 - L1ME4a LINE L1 -48 6073 5947 1379 176 114 29 chr3 2023412 2023685 -225500893 - MER1B DNA MER1_type -43 296 1 21 36 0 0 chr3 2023849 2023877 -225500701 + AT_rich Low_complexity Low_complexity 1 28 0 277 244 100 91 chr3 2024008 2024238 -225500340 - L1ME3A LINE L1 -154 6016 5785 297 359 31 8 chr3 2024331 2024459 -225500119 - L2 LINE L2 0 3272 3142 967 264 136 40 chr3 2024693 2025143 -225499435 - MLT1H LTR MaLR -54 495 3 261 83 0 0 chr3 2025241 2025277 -225499301 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 865 195 6 18 chr3 2025500 2025669 -225498909 - FRAM SINE Alu -14 162 1 188 33 0 33 chr3 2025669 2025699 -225498879 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 1485 213 0 11 chr3 2025704 2025990 -225498588 - AluJb SINE Alu -24 288 6 702 313 175 18 chr3 2026081 2026538 -225498040 - L2 LINE L2 -684 2630 2102 327 345 84 20 chr3 2026555 2027045 -225497533 - L1ME4a LINE L1 -297 5824 5304 764 211 155 0 chr3 2028720 2028914 -225495664 - MER58A DNA MER1_type 0 224 1 366 268 192 27 chr3 2028950 2029174 -225495404 - MIR SINE MIR 0 262 2 23 33 0 0 chr3 2029316 2029346 -225495232 + AT_rich Low_complexity Low_complexity 1 30 0 317 279 91 71 chr3 2029429 2029627 -225494951 + MIR SINE MIR 19 212 -50 202 182 0 0 chr3 2029677 2029710 -225494868 + (CA)n Simple_repeat Simple_repeat 2 34 0 194 352 114 0 chr3 2029832 2029920 -225494658 - L3b LINE CR1 -27 1556 1459 2605 103 16 0 chr3 2030411 2030780 -225493798 + THE1C LTR MaLR 1 375 0 313 286 24 0 chr3 2030921 2031005 -225493573 + L2 LINE L2 3222 3307 -6 508 361 47 29 chr3 2031036 2031377 -225493201 - LTR16C LTR ERVL -8 483 137 291 291 60 46 chr3 2032484 2032635 -225491943 + MIR SINE MIR 5 157 -105 229 218 11 35 chr3 2032697 2032784 -225491794 + (TAAA)n Simple_repeat Simple_repeat 1 85 0 409 302 63 6 chr3 2033191 2033350 -225491228 - MLT1F LTR MaLR -374 168 1 438 335 182 23 chr3 2033500 2033939 -225490639 - L2 LINE L2 -1 3312 2804 235 182 55 0 chr3 2033997 2034052 -225490526 - L2 LINE L2 -6 3307 3250 22 0 0 0 chr3 2034375 2034397 -225490181 + AT_rich Low_complexity Low_complexity 1 22 0 3506 142 39 32 chr3 2034397 2035087 -225489491 - L1MA7 LINE L1 0 6291 5597 324 283 75 12 chr3 2035650 2035823 -225488755 + MER113 DNA MER1_type? 34 217 -304 690 130 290 0 chr3 2036774 2036912 -225487666 - AluSc SINE Alu -5 304 127 289 301 0 32 chr3 2037175 2037268 -225487310 + MIR SINE MIR 78 167 -95 25 0 0 0 chr3 2037525 2037550 -225487028 + AT_rich Low_complexity Low_complexity 1 25 0 2575 50 0 0 chr3 2038150 2038449 -225486129 + AluY SINE Alu 1 299 -12 984 172 0 0 chr3 2038658 2038809 -225485769 + FRAM SINE Alu 1 150 -26 554 314 58 36 chr3 2038910 2039133 -225485445 - MIR SINE MIR -27 235 8 194 286 0 0 chr3 2040653 2040702 -225483876 + MIR SINE MIR 2 50 -212 1345 175 114 25 chr3 2040717 2040997 -225483581 - AluSx SINE Alu -2 310 6 2422 135 3 3 chr3 2041720 2042082 -225482496 + THE1B LTR MaLR 2 363 -1 229 239 149 30 chr3 2042150 2042217 -225482361 + MIR SINE MIR 112 186 -76 24 32 0 0 chr3 2043978 2044009 -225480569 + AT_rich Low_complexity Low_complexity 1 31 0 196 333 0 13 chr3 2044654 2044729 -225479849 - MIR SINE MIR -21 241 168 181 323 15 0 chr3 2045383 2045448 -225479130 + L2 LINE L2 2171 2236 -1078 1915 139 4 0 chr3 2045453 2045726 -225478852 - MER1A DNA MER1_type -194 335 62 190 371 14 0 chr3 2045763 2045833 -225478745 + L2 LINE L2 2302 2372 -942 300 310 41 16 chr3 2046555 2046757 -225477821 - MLT1J LTR MaLR -1 510 241 310 252 126 17 chr3 2046877 2046996 -225477582 - MLT1J LTR MaLR -371 140 9 2188 132 0 3 chr3 2047172 2047483 -225477095 - AluSx SINE Alu 0 312 3 255 200 0 0 chr3 2047528 2047573 -225477005 - MIR SINE MIR -121 141 97 332 302 75 0 chr3 2047575 2047681 -225476897 + L3 LINE CR1 1463 1576 -1 369 336 69 18 chr3 2048567 2048711 -225475867 + MIR SINE MIR 10 170 -92 180 0 0 0 chr3 2048711 2048731 -225475847 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 369 336 69 18 chr3 2048731 2048803 -225475775 + MIR SINE MIR 170 237 -25 184 182 36 73 chr3 2048830 2048885 -225475693 - L3b LINE CR1 -115 1468 1416 641 293 5 40 chr3 2049245 2049467 -225475111 - MIR SINE MIR -40 222 9 23 0 0 0 chr3 2050042 2050065 -225474513 + AT_rich Low_complexity Low_complexity 1 23 0 2300 106 0 0 chr3 2050284 2050587 -225473991 - AluSx SINE Alu -7 305 3 974 258 57 8 chr3 2050628 2050876 -225473702 - MLT1E3 LTR MaLR -194 430 171 403 276 118 0 chr3 2050904 2051031 -225473547 - MLT1E3 LTR MaLR -505 149 8 1801 118 92 0 chr3 2051289 2051561 -225473017 - AluSg SINE Alu -12 298 2 243 0 0 0 chr3 2051808 2051835 -225472743 + (CA)n Simple_repeat Simple_repeat 2 28 0 1743 124 70 4 chr3 2052806 2053079 -225471499 - AluSx SINE Alu -21 291 1 21 36 0 0 chr3 2053087 2053115 -225471463 + AT_rich Low_complexity Low_complexity 1 28 0 2175 102 3 0 chr3 2053542 2053857 -225470721 + AluSq SINE Alu 1 313 0 1869 299 120 15 chr3 2054356 2055359 -225469219 - L2 LINE L2 -4 3309 2185 205 318 0 0 chr3 2055358 2055421 -225469157 - MIR SINE MIR -16 246 184 * 3370 84 8 73 chr3 2056007 2056022 -225468556 + L1M1 LINE L1 3535 3549 -4016 3086 57 0 86 chr3 2056022 2056500 -225468078 - L1PA7 LINE L1 0 6154 5718 3370 84 8 73 chr3 2056500 2057047 -225467531 + L1M1 LINE L1 3549 4062 -3503 788 267 37 5 chr3 2057047 2057234 -225467344 - MER20 DNA MER1_type -26 193 1 2216 164 57 33 chr3 2057393 2057849 -225466729 + MER41B LTR ERV1 113 579 -56 286 198 0 99 chr3 2057826 2057907 -225466671 + MER66B LTR ERV1 403 475 -11 * 2372 74 0 10 chr3 2059486 2059797 -225464781 - AluY SINE Alu -2 309 2 821 259 0 0 chr3 2059815 2060004 -225464574 + MER5A DNA MER1_type 1 189 0 3678 119 15 0 chr3 2060339 2060885 -225463693 - MER41A LTR ERV1 0 554 1 610 324 86 47 chr3 2061782 2062270 -225462308 - L3 LINE CR1 -6 1571 1065 307 361 32 32 chr3 2062276 2062431 -225462147 + MER5A DNA MER1_type 35 189 0 190 197 45 0 chr3 2063041 2063107 -225461471 + CT-rich Low_complexity Low_complexity 4 72 0 1913 265 67 8 chr3 2063756 2064401 -225460177 + L1ME2 LINE L1 5465 6147 -17 825 142 8 15 chr3 2064796 2064930 -225459648 + FLAM_C SINE Alu 1 133 0 216 0 0 0 chr3 2065389 2065413 -225459165 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 21 0 0 0 chr3 2066789 2066810 -225457768 + AT_rich Low_complexity Low_complexity 1 21 0 24 67 0 0 chr3 2066953 2066998 -225457580 + AT_rich Low_complexity Low_complexity 1 45 0 316 283 50 8 chr3 2067290 2067410 -225457168 + MER46C DNA MER2_type 85 209 -129 186 43 0 0 chr3 2067455 2067478 -225457100 + (T)n Simple_repeat Simple_repeat 1 23 0 207 0 0 0 chr3 2067821 2067844 -225456734 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 22 0 0 0 chr3 2067853 2067875 -225456703 + AT_rich Low_complexity Low_complexity 1 22 0 289 346 163 0 chr3 2068510 2068663 -225455915 - MER5A DNA MER1_type -2 187 10 276 306 36 27 chr3 2069415 2069526 -225455052 - MIR SINE MIR -124 138 27 335 295 94 62 chr3 2069551 2069775 -225454803 + MIR SINE MIR 19 249 -13 2120 88 0 34 chr3 2069808 2070104 -225454474 - AluY SINE Alu -20 291 6 962 149 11 0 chr3 2070273 2070448 -225454130 + GA-rich Low_complexity Low_complexity 4 180 0 286 256 60 8 chr3 2070509 2070626 -225453952 - L1MC4 LINE L1 -2 8040 7918 21 0 0 0 chr3 2070730 2070751 -225453827 + AT_rich Low_complexity Low_complexity 1 21 0 2334 100 0 0 chr3 2070848 2071158 -225453420 - AluSg SINE Alu 0 310 1 1759 224 47 63 chr3 2072551 2073427 -225451151 - L1MCb LINE L1 -4852 844 333 679 266 5 18 chr3 2073426 2073644 -225450934 - L1MCb LINE L1 -5467 929 715 * 429 321 32 43 chr3 2073870 2074147 -225450431 - L1MCb LINE L1 -6031 365 92 281 297 31 78 chr3 2074159 2074287 -225450291 - MIR SINE MIR -124 138 17 322 311 87 6 chr3 2074369 2074530 -225450048 + L1ME4a LINE L1 5946 6119 -2 2005 114 20 7 chr3 2074535 2074833 -225449745 + AluSg SINE Alu 1 302 -8 184 206 0 0 chr3 2076781 2076815 -225447763 - L2 LINE L2 0 3313 3280 5703 194 38 15 chr3 2077233 2078112 -225446466 - L1MC3 LINE L1 -20 7765 6847 324 0 0 0 chr3 2078112 2078148 -225446430 + (TG)n Simple_repeat Simple_repeat 1 36 0 5703 194 38 15 chr3 2078148 2078541 -225446037 - L1MC3 LINE L1 -938 6847 6464 5650 243 28 20 chr3 2078534 2080505 -225444073 - L1MC3 LINE L1 -744 5402 3586 * 1849 113 4 0 chr3 2080545 2080792 -225443786 + AluSp SINE Alu 1 248 -65 187 213 25 0 chr3 2080939 2081019 -225443559 + (TA)n Simple_repeat Simple_repeat 1 82 0 610 197 9 4 chr3 2081043 2081285 -225443293 + (TA)n Simple_repeat Simple_repeat 1 243 0 438 271 76 70 chr3 2081483 2081811 -225442767 - L1ME4a LINE L1 -237 5884 5555 186 43 0 0 chr3 2082014 2082037 -225442541 + (TATATG)n Simple_repeat Simple_repeat 2 24 0 412 342 71 29 chr3 2082446 2082686 -225441892 + MIR SINE MIR 3 252 -10 25 0 0 0 chr3 2082874 2082899 -225441679 + AT_rich Low_complexity Low_complexity 1 25 0 259 226 130 75 chr3 2083104 2083250 -225441328 - MIR SINE MIR -13 249 96 1448 168 80 77 chr3 2083390 2083742 -225440836 - MLT1A1 LTR MaLR -2 363 11 271 255 0 0 chr3 2085253 2085304 -225439274 + L2 LINE L2 3212 3262 -10 25 31 0 0 chr3 2085732 2085764 -225438814 + AT_rich Low_complexity Low_complexity 1 32 0 377 250 37 9 chr3 2085781 2085889 -225438689 - MIR SINE MIR -24 238 128 2732 123 24 7 chr3 2085893 2086309 -225438269 - MSTA LTR MaLR -1 427 5 526 310 88 52 chr3 2087066 2087569 -225437009 - MLT1K LTR MaLR -2 586 66 469 88 25 12 chr3 2087761 2087841 -225436737 + (GAAA)n Simple_repeat Simple_repeat 4 84 0 654 315 63 48 chr3 2088192 2088655 -225435923 - LTR16C LTR ERVL -21 470 1 519 101 13 0 chr3 2088868 2088947 -225435631 + MADE1 DNA Mariner 1 80 0 396 0 0 0 chr3 2089527 2089571 -225435007 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 650 280 100 22 chr3 2090908 2091179 -225433399 + L2 LINE L2 3020 3311 -2 273 57 0 0 chr3 2092322 2092357 -225432221 + (TG)n Simple_repeat Simple_repeat 2 36 0 228 314 0 0 chr3 2092935 2093005 -225431573 - MIR SINE MIR -142 120 51 279 345 176 0 chr3 2095725 2095890 -225428688 - MIR SINE MIR -3 259 66 201 74 0 0 chr3 2095903 2095930 -225428648 + (CAT)n Simple_repeat Simple_repeat 2 28 0 702 324 8 32 chr3 2095939 2096186 -225428392 - MIR SINE MIR -10 252 12 329 297 141 64 chr3 2097568 2097945 -225426633 - MLT1L LTR MaLR -8 503 98 308 145 0 16 chr3 2098748 2098810 -225425768 + (TA)n Simple_repeat Simple_repeat 1 61 0 250 242 10 10 chr3 2098847 2098946 -225425632 + (TA)n Simple_repeat Simple_repeat 2 100 0 423 289 22 33 chr3 2099167 2099347 -225425231 - MIR SINE MIR 0 262 85 21 0 0 0 chr3 2099640 2099661 -225424917 + AT_rich Low_complexity Low_complexity 1 21 0 390 333 13 19 chr3 2100518 2100677 -225423901 - Charlie8 DNA MER1_type -2147 270 113 288 315 148 9 chr3 2100933 2101041 -225423537 + L2 LINE L2 3150 3272 0 591 213 0 0 chr3 2102161 2102297 -225422281 + GA-rich Low_complexity Low_complexity 3 138 0 190 398 54 0 chr3 2103483 2103576 -225421002 - MIR3 SINE MIR -96 112 15 237 326 12 12 chr3 2103961 2104047 -225420531 + MIR3 SINE MIR 13 98 -110 22 0 0 0 chr3 2104064 2104086 -225420492 + AT_rich Low_complexity Low_complexity 1 22 0 362 299 28 19 chr3 2104388 2104495 -225420083 + L2 LINE L2 3150 3257 -15 22 70 0 0 chr3 2104505 2104548 -225420030 + AT_rich Low_complexity Low_complexity 1 43 0 351 238 95 0 chr3 2104620 2104704 -225419874 - L2 LINE L2 -1 3271 3180 304 322 50 3 chr3 2104757 2104869 -225419709 + MIR SINE MIR 31 143 -73 1601 165 0 63 chr3 2105440 2105773 -225418805 + AluJo SINE Alu 1 312 0 206 32 32 0 chr3 2105855 2105886 -225418692 + (TAAAA)n Simple_repeat Simple_repeat 1 32 0 196 329 68 0 chr3 2105920 2105993 -225418585 - MIR SINE MIR -1 261 184 182 287 194 19 chr3 2106639 2106747 -225417831 + MIR SINE MIR 17 143 -65 287 333 95 0 chr3 2107977 2108103 -225416475 - MER5A DNA MER1_type 0 189 52 186 311 66 66 chr3 2107995 2108146 -225416432 + MER5A DNA MER1_type 37 187 -2 * 32 0 0 0 chr3 2108611 2108643 -225415935 + AT_rich Low_complexity Low_complexity 1 32 0 364 330 98 25 chr3 2109688 2109891 -225414687 - MIR SINE MIR -37 225 8 21 0 0 0 chr3 2110880 2110901 -225413677 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr3 2111818 2111843 -225412735 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1949 120 0 0 chr3 2111846 2112121 -225412457 - AluSg SINE Alu -35 275 1 347 182 13 39 chr3 2112550 2112627 -225411951 + Tigger2 DNA MER2_type 2 76 -2642 * 2466 157 25 11 chr3 2112606 2113045 -225411533 + Tigger2 DNA MER2_type 2273 2717 -1 386 299 92 51 chr3 2113375 2113592 -225410986 - MIR SINE MIR -18 244 19 182 296 0 0 chr3 2113704 2113748 -225410830 + MIR3 SINE MIR 8 51 -157 1986 142 3 0 chr3 2114813 2115109 -225409469 - AluSx SINE Alu -15 297 1 1498 160 52 119 chr3 2115962 2116425 -225408153 + MSTB1 LTR MaLR 1 432 0 484 339 37 45 chr3 2117740 2117982 -225406596 - MIR SINE MIR -16 246 7 204 179 0 0 chr3 2118271 2118310 -225406268 + (CATA)n Simple_repeat Simple_repeat 2 40 0 454 311 41 15 chr3 2118420 2118616 -225405962 + MIR SINE MIR 51 251 -11 25 75 0 0 chr3 2119700 2119753 -225404825 + AT_rich Low_complexity Low_complexity 1 53 0 474 248 33 62 chr3 2124176 2124386 -225400192 + L2 LINE L2 3109 3312 -1 547 322 22 6 chr3 2127108 2127291 -225397287 - MIR SINE MIR -13 249 64 469 248 132 45 chr3 2127566 2127832 -225396746 - L1ME2 LINE L1 -9 6155 5867 22 0 0 0 chr3 2127852 2127874 -225396704 + AT_rich Low_complexity Low_complexity 1 22 0 1645 187 42 3 chr3 2128481 2128765 -225395813 + AluJo SINE Alu 1 295 -17 260 240 80 0 chr3 2129586 2129661 -225394917 - HAL1 LINE L1 -477 2030 1950 969 313 93 8 chr3 2129669 2130151 -225394427 - HAL1 LINE L1 -726 1781 1259 180 210 37 0 chr3 2130208 2130289 -225394289 + (TA)n Simple_repeat Simple_repeat 1 84 0 951 279 114 30 chr3 2130320 2130758 -225393820 + L2 LINE L2 2150 2624 -690 423 184 26 0 chr3 2130767 2130843 -225393735 + MER20 DNA MER1_type 9 86 -133 241 364 0 0 chr3 2131004 2131081 -225393497 + L2 LINE L2 2681 2757 -557 524 311 97 25 chr3 2131945 2132780 -225391798 + L1MEc LINE L1 786 1680 -4716 4418 186 14 44 chr3 2132793 2133773 -225390805 - L1MA9 LINE L1 -30 6282 5332 696 236 42 23 chr3 2134765 2135028 -225389550 - L1MC5 LINE L1 -18 7943 7676 29 0 0 0 chr3 2135341 2135370 -225389208 + AT_rich Low_complexity Low_complexity 1 29 0 331 67 0 0 chr3 2135371 2135416 -225389162 + MADE1 DNA Mariner 36 80 0 315 303 91 51 chr3 2135689 2135864 -225388714 + MER5A DNA MER1_type 7 188 -1 1656 134 49 37 chr3 2136718 2137046 -225387532 - L1MA7 LINE L1 -4 6287 5956 4616 202 107 47 chr3 2137091 2138637 -225385941 + MER45R DNA AcHobo 1 1580 -1 238 349 0 23 chr3 2139095 2139181 -225385397 + L2 LINE L2 3229 3312 -1 254 238 138 0 chr3 2139831 2139911 -225384667 - L1MC5 LINE L1 -397 7564 7474 363 42 0 0 chr3 2139929 2139977 -225384601 - L1PA3 LINE L1 -3 6152 6105 1175 47 0 0 chr3 2139977 2140125 -225384453 + L1PA4 LINE L1 5930 6077 -78 1988 142 10 0 chr3 2140265 2140568 -225384010 + AluSx SINE Alu 6 311 -1 31 82 0 0 chr3 2143481 2143554 -225381024 + AT_rich Low_complexity Low_complexity 1 73 0 269 306 189 0 chr3 2144644 2144755 -225379823 - MIR SINE MIR -57 151 20 221 273 0 0 chr3 2148198 2148253 -225376325 + L2 LINE L2 3254 3308 -5 265 344 164 0 chr3 2148311 2148433 -225376145 - MIR SINE MIR -14 248 107 348 239 182 115 chr3 2148926 2149080 -225375498 + MER58A DNA MER1_type 1 174 -2246 1145 124 31 26 chr3 2149080 2149274 -225375304 + L1PA16 LINE L1 5962 6156 -10 348 239 182 115 chr3 2149274 2149328 -225375250 + MER58A DNA MER1_type 174 223 -1 645 295 18 5 chr3 2150279 2150496 -225374082 - MER58A DNA MER1_type -3 221 2 22 0 0 0 chr3 2151789 2151811 -225372767 + AT_rich Low_complexity Low_complexity 1 22 0 2173 181 17 67 chr3 2153239 2153715 -225370863 - MER66A LTR ERV1 0 478 27 676 152 29 14 chr3 2153787 2153925 -225370653 + L1MB1 LINE L1 6023 6162 -6 316 316 0 50 chr3 2154314 2154453 -225370125 + L1MC4 LINE L1 6571 6702 -1340 * 328 255 39 39 chr3 2154424 2154526 -225370052 - L1MC4 LINE L1 -1339 6703 6602 338 291 122 35 chr3 2155718 2155948 -225368630 + MIR SINE MIR 1 250 -12 42122 34 25 2 chr3 2157248 2163259 -225361319 + L1PA2 LINE L1 1 6155 0 23 0 0 0 chr3 2163597 2163620 -225360958 + AT_rich Low_complexity Low_complexity 1 23 0 1759 203 30 86 chr3 2164925 2165448 -225359130 - MLT1D LTR MaLR -8 618 1 310 259 99 15 chr3 2165456 2165587 -225358991 - MIR SINE MIR -15 247 106 392 287 64 35 chr3 2166092 2166311 -225358267 + MIR SINE MIR 20 245 -17 270 339 68 41 chr3 2166773 2166994 -225357584 - L2 LINE L2 -2 3311 3085 189 277 21 0 chr3 2167059 2167106 -225357472 - L2 LINE L2 -342 2971 2924 406 289 87 0 chr3 2169417 2169521 -225355057 - L2 LINE L2 -2 3270 3158 216 350 82 0 chr3 2170014 2170111 -225354467 + MIR3 SINE MIR 56 160 -48 450 323 30 6 chr3 2172501 2172665 -225351913 - MER117 DNA MER1_type 0 197 30 2379 132 3 19 chr3 2175824 2176194 -225348384 - THE1B LTR MaLR 0 364 1 1495 219 148 37 chr3 2176299 2176331 -225348247 - MLT2B1 LTR ERVL -8 512 485 300 27 0 0 chr3 2176331 2176368 -225348210 + (TG)n Simple_repeat Simple_repeat 1 37 0 1495 219 148 37 chr3 2176368 2176796 -225347782 - MLT2B1 LTR ERVL -35 485 1 22 0 0 0 chr3 2177424 2177446 -225347132 + AT_rich Low_complexity Low_complexity 1 22 0 193 210 40 0 chr3 2177604 2177704 -225346874 + (TTTA)n Simple_repeat Simple_repeat 4 107 0 1725 111 4 12 chr3 2178144 2178388 -225346190 + AluSx SINE Alu 1 242 -70 28 0 0 0 chr3 2178426 2178454 -225346124 + AT_rich Low_complexity Low_complexity 1 28 0 423 0 0 0 chr3 2179454 2179501 -225345077 + (TA)n Simple_repeat Simple_repeat 1 47 0 2211 121 3 6 chr3 2179501 2179814 -225344764 - AluSx SINE Alu 0 312 1 840 131 0 0 chr3 2179986 2180108 -225344470 + FRAM SINE Alu 35 156 -20 331 331 18 18 chr3 2180248 2180411 -225344167 + L2 LINE L2 3147 3309 -4 22 21 0 62 chr3 2180520 2180568 -225344010 + AT_rich Low_complexity Low_complexity 1 45 0 258 32 0 0 chr3 2180657 2180688 -225343890 + (TTTTA)n Simple_repeat Simple_repeat 1 31 0 2247 56 3 0 chr3 2180688 2180973 -225343605 - L1PA8 LINE L1 -24 6148 5863 25 0 0 0 chr3 2181021 2181046 -225343532 + AT_rich Low_complexity Low_complexity 1 25 0 320 296 68 31 chr3 2181666 2181828 -225342750 + MER102a DNA MER1_type 163 330 0 513 315 211 28 chr3 2182309 2182974 -225341604 - L2 LINE L2 -168 3104 2304 180 260 6 172 chr3 2182974 2183143 -225341435 + MIR3 SINE MIR 3 143 -65 2350 159 32 34 chr3 2183346 2183850 -225340728 + L1MA8 LINE L1 5785 6287 -4 346 308 147 53 chr3 2185843 2186278 -225338300 + L2 LINE L2 2826 3301 -12 30 69 0 0 chr3 2186302 2186360 -225338218 + AT_rich Low_complexity Low_complexity 1 58 0 2647 112 3 3 chr3 2186590 2186965 -225337613 - THE1C LTR MaLR 0 375 1 309 270 11 11 chr3 2187019 2187108 -225337470 - MER117 DNA MER1_type -107 90 2 1127 221 69 1 chr3 2187262 2187581 -225336997 + MLT1D LTR MaLR 128 505 0 271 217 11 11 chr3 2187718 2187810 -225336768 + (TA)n Simple_repeat Simple_repeat 2 93 0 397 310 48 7 chr3 2188392 2188537 -225336041 + MIR SINE MIR 66 216 -46 387 248 59 20 chr3 2189629 2189782 -225334796 - MER103 DNA DNA -2 164 6 198 103 0 0 chr3 2190609 2190638 -225333940 + (TA)n Simple_repeat Simple_repeat 2 30 0 429 274 48 43 chr3 2190640 2190826 -225333752 - MIR SINE MIR -70 192 6 621 287 18 0 chr3 2190836 2191000 -225333578 + LTR33 LTR ERVL 1 167 -354 899 301 57 57 chr3 2191123 2191672 -225332906 + MLT1H LTR MaLR 1 549 0 271 360 51 22 chr3 2191930 2192108 -225332470 - MIR SINE MIR -78 184 2 377 377 34 17 chr3 2192752 2192988 -225331590 + MIR SINE MIR 23 262 0 366 139 0 0 chr3 2193226 2193298 -225331280 + (TG)n Simple_repeat Simple_repeat 1 72 0 323 305 103 33 chr3 2194322 2194535 -225330043 - MIR SINE MIR -31 231 4 283 357 45 9 chr3 2194756 2194868 -225329710 - MIR SINE MIR -115 147 32 241 326 34 11 chr3 2195290 2195379 -225329199 - L2 LINE L2 -190 3082 2992 180 278 188 21 chr3 2195557 2195701 -225328877 - MIR SINE MIR -46 216 49 183 42 0 0 chr3 2196332 2196356 -225328222 + (TC)n Simple_repeat Simple_repeat 2 25 0 1751 181 7 13 chr3 2196356 2196655 -225327923 - AluJb SINE Alu -13 299 3 252 267 12 23 chr3 2196690 2196776 -225327802 - MIR SINE MIR 0 262 178 257 314 6 70 chr3 2196828 2196930 -225327648 + MIR SINE MIR 8 98 -164 3190 158 10 46 chr3 2196930 2197164 -225327414 - MER6A DNA MER2_type -260 605 364 1704 166 3 28 chr3 2197164 2197454 -225327124 + AluJo SINE Alu 1 283 -29 3190 158 10 46 chr3 2197454 2197846 -225326732 - MER6A DNA MER2_type -501 364 2 257 314 6 70 chr3 2197846 2197899 -225326679 + MIR SINE MIR 98 153 -109 281 378 66 42 chr3 2198400 2198641 -225325937 + L3b LINE CR1 1317 1563 -20 299 333 38 50 chr3 2200042 2200201 -225324377 - MIR3 SINE MIR -25 183 27 209 269 90 67 chr3 2200864 2200998 -225323580 + MIR SINE MIR 126 262 0 249 338 0 0 chr3 2201117 2201194 -225323384 + MIR3 SINE MIR 125 201 -7 2286 29 11 4 chr3 2202201 2202559 -225322019 - AluY SINE Alu 0 360 1 366 264 45 10 chr3 2202889 2203026 -225321552 + L1ME3 LINE L1 3524 3666 -2480 25 31 0 0 chr3 2203052 2203084 -225321494 + AT_rich Low_complexity Low_complexity 1 32 0 2330 268 73 46 chr3 2203118 2203399 -225321179 + L1ME3 LINE L1 3671 3943 -2219 1246 202 102 60 chr3 2203399 2203829 -225320749 + LTR47A LTR ERVL 5 452 0 2330 268 73 46 chr3 2203829 2205501 -225319077 + L1ME3 LINE L1 3943 5705 -457 1796 155 0 20 chr3 2205501 2205798 -225318780 + AluSx SINE Alu 1 291 -21 2330 268 73 46 chr3 2205798 2206269 -225318309 + L1ME3 LINE L1 5705 6162 0 30 27 0 0 chr3 2206618 2206655 -225317923 + AT_rich Low_complexity Low_complexity 1 37 0 193 381 12 0 chr3 2208021 2208105 -225316473 + L2 LINE L2 3188 3272 0 199 250 108 42 chr3 2208358 2208478 -225316100 + L2 LINE L2 2916 3043 -229 3707 192 40 34 chr3 2209876 2210734 -225313844 + MER21B LTR ERV1 1 863 0 311 296 85 63 chr3 2210808 2211207 -225313371 - L1 LINE L1 -2628 3518 3111 750 261 18 0 chr3 2211980 2212145 -225312433 - MER45A DNA AcHobo -10 168 1 546 276 83 11 chr3 2213757 2213938 -225310640 + MIR SINE MIR 36 229 -33 733 228 35 6 chr3 2213988 2214159 -225310419 - MER5B DNA MER1_type 0 178 3 294 303 148 68 chr3 2215291 2215453 -225309125 + MER5A DNA MER1_type 14 188 -1 432 0 0 0 chr3 2215886 2215934 -225308644 + (TG)n Simple_repeat Simple_repeat 2 49 0 1544 91 70 17 chr3 2218042 2218283 -225306295 + L1PA13 LINE L1 5909 6162 -1 23 0 10 0 chr3 2218283 2218352 -225306226 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr3 2218375 2218399 -225306179 + AT_rich Low_complexity Low_complexity 1 24 0 632 294 131 0 chr3 2219344 2219565 -225305013 + MIR SINE MIR 3 252 -10 196 337 24 24 chr3 2219579 2219662 -225304916 - MIR3 SINE MIR -33 175 93 273 298 12 36 chr3 2219735 2219819 -225304759 + MIR SINE MIR 43 124 -84 * 436 270 43 9 chr3 2219812 2219927 -225304651 - MIR SINE MIR -143 119 1 291 269 0 65 chr3 2220079 2220172 -225304406 + MER5B DNA MER1_type 1 87 -91 1111 180 23 59 chr3 2220935 2221220 -225303358 + AluJb SINE Alu 65 340 0 23 0 0 0 chr3 2221303 2221326 -225303252 + AT_rich Low_complexity Low_complexity 1 23 0 3284 135 19 17 chr3 2223615 2224141 -225300437 - MER1A DNA MER1_type 0 527 1 2508 112 99 7 chr3 2225012 2225471 -225299107 + LTR12 LTR ERV1 1 714 0 214 137 39 39 chr3 2225712 2225763 -225298815 + T-rich Low_complexity Low_complexity 2 52 0 1989 140 0 13 chr3 2225862 2226176 -225298402 + AluSx SINE Alu 3 312 0 39 22 0 0 chr3 2226177 2226223 -225298355 + AT_rich Low_complexity Low_complexity 1 46 0 349 318 88 7 chr3 2226280 2226428 -225298150 - MIR SINE MIR -16 246 87 279 193 9 23 chr3 2227505 2227624 -225296954 - MIR SINE MIR -1 261 86 26 0 0 0 chr3 2227700 2227726 -225296852 + AT_rich Low_complexity Low_complexity 1 26 0 540 260 80 35 chr3 2228224 2228424 -225296154 - MLT1K LTR MaLR -4 584 376 12019 55 2 0 chr3 2228751 2231053 -225293525 - L1PA5 LINE L1 -1 6153 3848 380 378 11 6 chr3 2231102 2231282 -225293296 + L2 LINE L2 2599 2779 -535 819 208 26 26 chr3 2231340 2231532 -225293046 - MER3 DNA MER1_type -17 192 1 312 334 93 64 chr3 2231621 2231965 -225292613 + L2 LINE L2 2919 3272 0 21 0 0 0 chr3 2233410 2233431 -225291147 + AT_rich Low_complexity Low_complexity 1 21 0 657 287 0 53 chr3 2233448 2233695 -225290883 - MIR SINE MIR -14 248 15 2285 122 0 0 chr3 2234679 2234991 -225289587 - AluSx SINE Alu 0 312 1 941 292 131 43 chr3 2235021 2235752 -225288826 + HAL1 LINE L1 641 1463 -1044 1392 210 62 25 chr3 2235752 2236109 -225288469 + MLT1A2 LTR MaLR 5 374 0 941 292 131 43 chr3 2236109 2236258 -225288320 + HAL1 LINE L1 1463 1598 -909 1373 188 68 4 chr3 2236708 2237005 -225287573 - AluJo SINE Alu 0 315 2 183 283 0 19 chr3 2237207 2237260 -225287318 + L2 LINE L2 3217 3268 -4 2090 128 0 0 chr3 2237270 2237566 -225287012 + AluSx SINE Alu 2 297 -15 21 0 0 0 chr3 2237890 2237911 -225286667 + AT_rich Low_complexity Low_complexity 1 21 0 444 96 0 60 chr3 2240005 2240088 -225284490 - L1PA13 LINE L1 -11 6152 6075 319 252 31 126 chr3 2240163 2240190 -225284388 - MER5B DNA MER1_type -16 162 134 1829 122 8 0 chr3 2240190 2240444 -225284134 + AluSx SINE Alu 36 291 -21 319 252 31 126 chr3 2240444 2240575 -225284003 - MER5B DNA MER1_type -44 134 19 205 300 10 40 chr3 2240858 2240958 -225283620 - L3b LINE CR1 -172 1411 1315 500 186 0 16 chr3 2242336 2242465 -225282113 + (TATATG)n Simple_repeat Simple_repeat 4 130 0 291 28 0 0 chr3 2242478 2242514 -225282064 + (CA)n Simple_repeat Simple_repeat 2 37 0 991 296 90 35 chr3 2242530 2242963 -225281615 - LTR16B LTR ERVL 0 464 8 2995 214 19 16 chr3 2244150 2244693 -225279885 + L1 LINE L1 4488 5035 -1111 207 0 0 0 chr3 2244693 2244716 -225279862 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 2995 214 19 16 chr3 2244716 2244915 -225279663 + L1 LINE L1 5035 5232 -914 339 344 46 0 chr3 2245947 2246098 -225278480 - MIR SINE MIR -3 259 102 1819 168 0 19 chr3 2246115 2246430 -225278148 + AluJb SINE Alu 1 309 -3 41645 61 2 0 chr3 2247180 2253314 -225271264 + L1PA5 LINE L1 11 6153 -1 233 113 28 28 chr3 2253592 2253657 -225270921 + (TA)n Simple_repeat Simple_repeat 2 67 0 1632 161 14 14 chr3 2253657 2253942 -225270636 - AluJo SINE Alu -27 285 1 330 143 0 14 chr3 2254278 2254348 -225270230 - L1MB7 LINE L1 -5 6179 6111 408 321 93 12 chr3 2254387 2254633 -225269945 - L1ME4a LINE L1 -257 5864 5599 222 37 0 0 chr3 2254721 2254748 -225269830 + (CA)n Simple_repeat Simple_repeat 2 28 0 482 46 15 0 chr3 2254750 2254815 -225269763 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 247 321 83 46 chr3 2254934 2255043 -225269535 + MIR3 SINE MIR 3 115 -93 626 251 79 100 chr3 2255056 2255447 -225269131 + MSTD LTR MaLR 1 383 -13 372 210 0 0 chr3 2255606 2255687 -225268891 + (TA)n Simple_repeat Simple_repeat 1 81 0 1826 149 17 3 chr3 2255687 2255988 -225268590 - AluJb SINE Alu -7 305 1 289 324 101 21 chr3 2256413 2256889 -225267689 - L1M4 LINE L1 -2412 3734 3221 321 221 72 171 chr3 2257202 2257457 -225267121 - L1M4 LINE L1 -3235 2911 2727 1917 125 3 14 chr3 2257457 2257753 -225266825 + AluSx SINE Alu 3 295 -17 321 221 72 171 chr3 2257753 2257994 -225266584 - L1M4 LINE L1 -3419 2727 2464 642 186 57 52 chr3 2258004 2258198 -225266380 - MER63 DNA MER1_type -1 1061 867 332 328 16 0 chr3 2258198 2258326 -225266252 + L1MC4 LINE L1 7307 7436 -606 600 228 11 97 chr3 2258430 2258760 -225265818 - L1ME4a LINE L1 -702 5464 5165 972 278 126 68 chr3 2258794 2259859 -225264719 - L1MC4a LINE L1 -1011 6797 5671 1670 238 106 14 chr3 2260546 2261058 -225263520 + MLT1F1 LTR MaLR 9 567 0 2288 236 75 38 chr3 2261155 2261840 -225262738 - MER21B LTR ERV1 -54 809 100 314 147 44 0 chr3 2261966 2262034 -225262544 + MER58 DNA MER1_type 2288 2358 -62 5345 133 10 0 chr3 2262041 2263298 -225261280 - L1PB3 LINE L1 0 6154 4887 29 28 0 0 chr3 2263518 2263554 -225261024 + AT_rich Low_complexity Low_complexity 1 36 0 393 290 96 28 chr3 2266212 2266608 -225257970 + L1ME4a LINE L1 5629 6051 -70 2925 195 40 15 chr3 2267443 2268124 -225256454 + L1MC2 LINE L1 5636 6333 -11 22 35 0 0 chr3 2268232 2268261 -225256317 + AT_rich Low_complexity Low_complexity 1 29 0 209 194 0 16 chr3 2268352 2268414 -225256164 + CT-rich Low_complexity Low_complexity 2 62 0 267 31 0 0 chr3 2269171 2269203 -225255375 + (GA)n Simple_repeat Simple_repeat 2 33 0 2015 197 15 5 chr3 2269324 2269714 -225254864 - MSTD LTR MaLR 0 396 3 412 222 134 8 chr3 2270823 2271025 -225253553 - MER67D LTR ERV1 0 514 233 2770 176 3 4 chr3 2271027 2271894 -225252684 + L1PB1 LINE L1 4806 5672 -479 734 113 0 0 chr3 2271905 2272020 -225252558 - L1P5 LINE L1 -362 5789 5675 281 98 49 0 chr3 2272025 2272066 -225252512 - L1P5 LINE L1 -425 5726 5684 180 0 0 0 chr3 2272066 2272086 -225252492 + (TA)n Simple_repeat Simple_repeat 1 20 0 2331 123 3 6 chr3 2272086 2272445 -225252133 + L1PB1 LINE L1 5794 6151 0 423 0 0 0 chr3 2272462 2272509 -225252069 + (CA)n Simple_repeat Simple_repeat 2 48 0 963 144 33 93 chr3 2272512 2272727 -225251851 - MER67D LTR ERV1 -312 202 1 21 36 0 0 chr3 2274714 2274742 -225249836 + AT_rich Low_complexity Low_complexity 1 28 0 297 164 0 36 chr3 2275860 2275915 -225248663 + MIR SINE MIR 1 53 -209 996 237 10 5 chr3 2275991 2276198 -225248380 + MER58A DNA MER1_type 17 224 0 238 150 0 0 chr3 2276354 2276394 -225248184 - L1MB7 LINE L1 -13 6171 6132 2045 247 59 22 chr3 2276489 2277214 -225247364 - L1MB7 LINE L1 -195 5989 5239 267 325 67 17 chr3 2277317 2277437 -225247141 + MIR SINE MIR 29 154 -108 1536 201 3 11 chr3 2279963 2280247 -225244331 - AluJo SINE Alu -30 282 1 500 352 109 24 chr3 2280805 2281452 -225243126 + L2 LINE L2 2516 3302 -11 180 225 42 42 chr3 2281844 2281915 -225242663 - L2 LINE L2 -2614 700 630 * 334 313 47 0 chr3 2281905 2282033 -225242545 + MIR3 SINE MIR 70 203 -5 21 0 0 0 chr3 2283049 2283070 -225241508 + AT_rich Low_complexity Low_complexity 1 21 0 1469 149 54 144 chr3 2283164 2283628 -225240950 + LTR49 LTR ERV1 4 425 -170 346 226 11 117 chr3 2283635 2283789 -225240789 + LTR48 LTR ERV1 521 614 -30 324 0 0 0 chr3 2283829 2283865 -225240713 + (CA)n Simple_repeat Simple_repeat 2 37 0 2062 112 0 7 chr3 2284728 2285015 -225239563 + AluSp SINE Alu 29 313 0 225 0 0 0 chr3 2286701 2286726 -225237852 + (TG)n Simple_repeat Simple_repeat 2 26 0 493 275 38 26 chr3 2287512 2287702 -225236876 - MIR3 SINE MIR -54 208 6 21 0 0 0 chr3 2289880 2289901 -225234677 + AT_rich Low_complexity Low_complexity 1 21 0 253 278 0 0 chr3 2292372 2292426 -225232152 - L2 LINE L2 -18 3295 3242 1812 178 30 35 chr3 2292427 2292825 -225231753 + MSTD LTR MaLR 1 396 0 3051 260 42 31 chr3 2292827 2293762 -225230816 + MSTD-int LTR MaLR 2 946 -789 886 242 57 0 chr3 2293764 2293975 -225230603 + MSTD LTR MaLR 163 385 -11 447 233 110 75 chr3 2294061 2294499 -225230079 - L1MC5 LINE L1 -20 7941 7489 529 278 53 74 chr3 2294796 2295080 -225229498 - L2 LINE L2 -111 3202 2925 1673 170 48 0 chr3 2295340 2295507 -225229071 - AluSg SINE Alu -2 308 120 405 39 0 0 chr3 2295507 2295558 -225229020 + (TG)n Simple_repeat Simple_repeat 2 52 0 1673 170 48 0 chr3 2295558 2295684 -225228894 - AluSg SINE Alu -190 120 1 1727 134 17 7 chr3 2295768 2296060 -225228518 - AluY SINE Alu -16 295 1 1280 275 59 45 chr3 2296062 2296574 -225228004 - LTR40a LTR ERVL 0 519 1 235 111 0 0 chr3 2296575 2296611 -225227967 + MER5C DNA MER1_type 289 324 0 1611 143 34 20 chr3 2296897 2297191 -225227387 - L1PA16 LINE L1 -3 6163 5866 393 264 62 92 chr3 2297230 2297525 -225227053 - L1M4c LINE L1 -4423 2140 1704 2245 194 21 8 chr3 2297531 2298010 -225226568 + L1MC3 LINE L1 7300 7784 -1 328 196 36 36 chr3 2298249 2298417 -225226161 + (CACAA)n Simple_repeat Simple_repeat 5 172 0 2157 237 49 35 chr3 2298540 2299442 -225225136 - L1M4c LINE L1 -2481 3901 2988 969 223 32 77 chr3 2299429 2299912 -225224666 - L1M4c LINE L1 -3698 2684 2223 * 21 36 0 0 chr3 2301315 2301343 -225223235 + AT_rich Low_complexity Low_complexity 1 28 0 221 200 10 30 chr3 2301969 2302069 -225222509 + A-rich Low_complexity Low_complexity 3 100 0 5474 36 3 1 chr3 2302267 2302929 -225221649 + L1PA5 LINE L1 5491 6153 -1 251 123 31 15 chr3 2303207 2303272 -225221306 + (TA)n Simple_repeat Simple_repeat 1 66 0 1599 158 14 14 chr3 2303272 2303557 -225221021 - AluJo SINE Alu -27 285 1 2348 44 3 0 chr3 2303641 2303935 -225220643 - AluY SINE Alu -16 295 1 2176 87 17 0 chr3 2304072 2304359 -225220219 - AluSc SINE Alu -15 294 3 21 0 0 0 chr3 2304375 2304396 -225220182 + AT_rich Low_complexity Low_complexity 1 21 0 920 67 0 0 chr3 2304398 2304518 -225220060 + L1PB3 LINE L1 6026 6145 -9 621 214 17 79 chr3 2304518 2304696 -225219882 - L1MA9 LINE L1 -3 6288 6122 318 286 211 6 chr3 2305687 2305848 -225218730 + L2 LINE L2 3096 3289 -24 466 322 44 6 chr3 2307185 2307365 -225217213 - MIR SINE MIR -56 206 20 390 260 188 26 chr3 2308668 2308822 -225215756 + MIR SINE MIR 33 211 -51 23 33 0 0 chr3 2308823 2308853 -225215725 + AT_rich Low_complexity Low_complexity 1 30 0 217 325 74 43 chr3 2310588 2310751 -225213827 + MIR SINE MIR 6 173 -89 316 109 0 0 chr3 2311079 2311125 -225213453 + MADE1 DNA Mariner 1 46 -34 602 331 57 75 chr3 2311375 2312461 -225212117 + L2 LINE L2 2228 3304 -9 693 312 44 30 chr3 2313342 2313640 -225210938 + LTR16A LTR ERVL 70 371 -79 4496 64 33 4 chr3 2314072 2315072 -225209506 + MER11A LTR ERVK 1 1266 0 368 240 39 0 chr3 2316040 2316144 -225208434 - MER105 DNA DNA -55 149 42 39 50 0 0 chr3 2321647 2321707 -225202871 + AT_rich Low_complexity Low_complexity 1 60 0 1857 187 107 3 chr3 2321861 2322252 -225202326 - MSTB1 LTR MaLR 0 432 1 205 333 86 0 chr3 2322403 2322496 -225202082 - MIR3 SINE MIR -31 177 77 1823 154 36 3 chr3 2322687 2322993 -225201585 + MER6A DNA MER2_type 1 316 -289 332 177 32 0 chr3 2322986 2323048 -225201530 - MSTB1 LTR MaLR -368 64 1 * 1764 122 7 0 chr3 2323098 2323377 -225201201 + MER6A DNA MER2_type 325 605 0 197 375 100 17 chr3 2323614 2323734 -225200844 - L2 LINE L2 0 3272 3143 1532 270 57 43 chr3 2323770 2324351 -225200227 - MLT1E LTR MaLR -4 589 1 344 115 0 186 chr3 2324354 2324426 -225200152 + MER5C DNA MER1_type 233 317 -7 1755 171 13 3 chr3 2324426 2324725 -225199853 - AluJb SINE Alu -10 302 1 1209 269 59 45 chr3 2324727 2325239 -225199339 - LTR40a LTR ERVL 0 519 1 344 115 0 186 chr3 2325239 2325276 -225199302 + MER5C DNA MER1_type 318 324 0 512 276 43 19 chr3 2326680 2326890 -225197688 + MER58C DNA MER1_type 1 215 0 781 236 113 5 chr3 2327503 2327595 -225196983 - MER46A DNA MER2_type -2496 235 154 1936 107 95 76 chr3 2327595 2328015 -225196563 + MSTA LTR MaLR 1 428 0 781 236 113 5 chr3 2328015 2328134 -225196444 - MER46A DNA MER2_type -2577 154 1 476 221 32 0 chr3 2328678 2328773 -225195805 - MER5A DNA MER1_type 0 189 92 602 234 22 0 chr3 2328773 2328910 -225195668 + MLT2F LTR ERVL 1 140 -523 501 192 10 29 chr3 2328920 2329024 -225195554 + MLT1E3 LTR MaLR 51 152 -472 3475 204 8 8 chr3 2329042 2329666 -225194912 + MLT1A1-int LTR MaLR 1108 1731 -4 780 193 183 63 chr3 2329670 2329955 -225194623 + MLT1A1 LTR MaLR 1 319 -46 321 181 33 45 chr3 2329967 2330085 -225194493 + MLT1E1 LTR MaLR 149 268 -359 299 154 15 0 chr3 2330087 2330152 -225194426 + GA-rich Low_complexity Low_complexity 1 66 0 190 212 30 0 chr3 2330266 2330299 -225194279 - MER5A DNA MER1_type -154 35 2 244 335 48 48 chr3 2330302 2330469 -225194109 + L3 LINE CR1 1308 1474 -103 289 243 78 39 chr3 2330556 2330674 -225193904 - MIR SINE MIR -90 118 2 22 0 0 0 chr3 2331341 2331363 -225193215 + AT_rich Low_complexity Low_complexity 1 22 0 503 347 73 32 chr3 2331999 2332371 -225192207 - MLT1J2 LTR MaLR -14 436 50 259 347 0 0 chr3 2333073 2333148 -225191430 + L3 LINE CR1 1307 1381 -196 243 338 0 13 chr3 2333234 2333311 -225191267 + MIR SINE MIR 75 150 -112 254 177 131 98 chr3 2333562 2333664 -225190914 - MIR3 SINE MIR -42 166 56 30 0 0 0 chr3 2334124 2334154 -225190424 + AT_rich Low_complexity Low_complexity 1 30 0 1993 99 46 3 chr3 2335776 2336060 -225188518 + AluSx SINE Alu 1 296 -16 25 0 0 0 chr3 2336438 2336463 -225188115 + AT_rich Low_complexity Low_complexity 1 25 0 1576 159 77 69 chr3 2336700 2337077 -225187501 + MLT1B LTR MaLR 11 390 0 2599 109 5 11 chr3 2337768 2338145 -225186433 + THE1C LTR MaLR 1 375 0 264 376 30 15 chr3 2338672 2338805 -225185773 - MIR3 SINE MIR -41 167 33 406 273 11 0 chr3 2338928 2339016 -225185562 - L2 LINE L2 -30 3283 3195 271 322 138 0 chr3 2341820 2341972 -225182606 - MIR SINE MIR -3 259 87 7651 17 1 0 chr3 2342442 2344096 -225180482 + L1PA3 LINE L1 4514 6168 0 202 39 0 0 chr3 2344070 2344152 -225180426 + (TAAA)n Simple_repeat Simple_repeat 3 84 0 285 294 0 24 chr3 2344611 2344737 -225179841 + CT-rich Low_complexity Low_complexity 4 126 0 391 381 11 16 chr3 2345107 2345296 -225179282 + L2 LINE L2 2875 3062 -251 1542 201 189 41 chr3 2345386 2345947 -225178631 + LTR48B LTR ERV1 1 644 0 398 336 17 0 chr3 2345952 2346071 -225178507 + L2 LINE L2 3193 3313 0 36 0 0 0 chr3 2346190 2346226 -225178352 + AT_rich Low_complexity Low_complexity 1 36 0 2821 240 54 40 chr3 2346286 2348047 -225176531 - L1ME1 LINE L1 -5 6161 4377 2067 263 86 18 chr3 2348069 2348370 -225176208 - L1ME1 LINE L1 -2905 3241 2962 1406 187 50 25 chr3 2348370 2348653 -225175925 - AluJo SINE Alu -22 290 1 2067 263 86 18 chr3 2348653 2349292 -225175286 - L1ME1 LINE L1 -3184 2962 2237 765 279 68 19 chr3 2349300 2349565 -225175013 + L1MEc LINE L1 37 314 -6082 2109 293 58 23 chr3 2349609 2350730 -225173848 + L1MEc LINE L1 1164 2323 -4073 471 250 0 0 chr3 2350746 2350833 -225173745 - MER7A DNA MER2_type 0 337 251 1112 214 0 0 chr3 2350833 2351039 -225173539 + MER2 DNA MER2_type 1 206 -139 1408 167 38 38 chr3 2351150 2351413 -225173165 - MER7A DNA MER2_type -85 261 1 380 327 75 39 chr3 2351631 2351885 -225172693 + L2 LINE L2 2812 3074 -198 238 369 92 14 chr3 2351932 2352073 -225172505 - MIR SINE MIR -70 192 41 225 229 72 12 chr3 2353203 2353286 -225171292 + L1MC4 LINE L1 6616 6703 -1339 21 0 0 0 chr3 2353332 2353353 -225171225 + AT_rich Low_complexity Low_complexity 1 21 0 1203 282 104 32 chr3 2354659 2355276 -225169302 - MLT2F LTR ERVL -2 661 1 297 128 0 0 chr3 2355496 2355543 -225169035 + (CA)n Simple_repeat Simple_repeat 2 48 0 442 284 115 6 chr3 2355558 2355741 -225168837 + MIR SINE MIR 2 204 -58 27 49 0 0 chr3 2357697 2357738 -225166840 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr3 2357903 2357933 -225166645 + AT_rich Low_complexity Low_complexity 1 30 0 382 359 12 12 chr3 2358315 2358482 -225166096 - MIR SINE MIR -88 174 8 222 37 0 0 chr3 2359008 2359035 -225165543 + (AATAG)n Simple_repeat Simple_repeat 5 31 0 232 266 76 0 chr3 2359079 2359158 -225165420 + MIR SINE MIR 117 201 -61 379 225 149 64 chr3 2359178 2359402 -225165176 + MLT1H1 LTR MaLR 22 309 -286 1016 234 57 4 chr3 2359554 2359802 -225164776 + L1M4 LINE L1 2 262 -6280 2159 91 0 7 chr3 2359871 2360184 -225164394 + AluSx SINE Alu 1 311 0 818 334 42 42 chr3 2360230 2360781 -225163797 + L1PA6 LINE L1 858 1408 -6166 255 304 49 33 chr3 2360752 2360936 -225163642 + L1PA6 LINE L1 2121 2307 -5267 * 1863 91 0 4 chr3 2361305 2361559 -225163019 + AluY SINE Alu 59 311 0 5455 251 24 21 chr3 2361947 2364279 -225160299 + L1PA6 LINE L1 2231 4524 -3060 837 215 5 46 chr3 2364282 2364501 -225160077 + L1 LINE L1 4589 4798 -1348 6188 83 108 19 chr3 2364501 2365565 -225159013 + MER11A LTR ERVK 1 1266 0 2086 188 68 60 chr3 2365570 2366871 -225157707 + L1PA6 LINE L1 6236 7592 0 4462 239 65 44 chr3 2366903 2368813 -225155765 + L1M4 LINE L1 307 2342 -4302 3371 162 24 7 chr3 2368813 2369405 -225155173 - LTR43 LTR ERV1 0 602 1 4462 239 65 44 chr3 2369405 2370023 -225154555 + L1M4 LINE L1 2342 2946 -3698 2873 227 45 18 chr3 2370010 2370979 -225153599 + L1M4 LINE L1 3250 4245 -2399 * 201 363 70 19 chr3 2371188 2371345 -225153233 - MIR SINE MIR -59 203 39 24 0 0 0 chr3 2371780 2371804 -225152774 + AT_rich Low_complexity Low_complexity 1 24 0 415 252 163 0 chr3 2371928 2372051 -225152527 - L2 LINE L2 0 3313 3171 29 98 0 0 chr3 2372757 2372849 -225151729 + AT_rich Low_complexity Low_complexity 1 92 0 5759 122 2 9 chr3 2374970 2376169 -225148409 - L1PA13 LINE L1 0 6163 4967 4686 181 48 73 chr3 2377660 2378817 -225145761 - MER52A LTR ERV1 0 1755 627 948 258 11 22 chr3 2378983 2379250 -225145328 + L1MCb LINE L1 1 264 -5781 805 243 52 33 chr3 2379254 2379665 -225144913 - L1MCa LINE L1 -1035 5347 4900 * 4354 257 54 17 chr3 2379659 2381278 -225143300 - L1MCa LINE L1 -1885 4497 2819 3903 209 56 15 chr3 2381264 2382307 -225142271 + L1MC3 LINE L1 5161 5400 -746 * 234 195 39 13 chr3 2382314 2382391 -225142187 - L1MCa LINE L1 -4001 2381 2303 337 301 83 74 chr3 2382403 2382699 -225141879 - L1MCa LINE L1 -4230 2333 2032 1662 140 34 17 chr3 2382699 2382992 -225141586 - L1PA16 LINE L1 -3 6163 5866 337 301 83 74 chr3 2382992 2383007 -225141571 - L1MCa LINE L1 -4531 2032 2019 393 293 98 6 chr3 2383151 2383325 -225141253 - L1MCa LINE L1 -4491 1893 1704 2245 194 21 8 chr3 2383331 2383810 -225140768 + L1MC3 LINE L1 7300 7784 -1 1735 290 128 43 chr3 2383851 2384874 -225139704 - L2 LINE L2 -338 2976 1867 482 358 6 6 chr3 2384989 2385168 -225139410 - L2 LINE L2 -1731 1583 1405 587 94 10 0 chr3 2385241 2385337 -225139241 + (TA)n Simple_repeat Simple_repeat 1 97 0 333 0 0 0 chr3 2385336 2385373 -225139205 + (GA)n Simple_repeat Simple_repeat 2 38 0 * 1565 192 4 4 chr3 2385375 2385523 -225139055 - AluSx SINE Alu -36 276 126 279 0 0 0 chr3 2385523 2385554 -225139024 + (TG)n Simple_repeat Simple_repeat 2 32 0 1565 192 4 4 chr3 2385554 2385681 -225138897 - AluSx SINE Alu -185 127 1 198 128 0 0 chr3 2387566 2387605 -225136973 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 231 247 33 73 chr3 2389163 2389313 -225135265 - MIR SINE MIR -2 260 117 28 71 0 0 chr3 2389821 2389877 -225134701 + AT_rich Low_complexity Low_complexity 1 56 0 180 0 0 0 chr3 2389902 2389922 -225134656 + (T)n Simple_repeat Simple_repeat 1 20 0 235 246 66 0 chr3 2390759 2390820 -225133758 + MIR SINE MIR 49 113 -149 326 311 57 31 chr3 2391281 2391474 -225133104 - L3 LINE CR1 -166 1411 1214 289 286 162 0 chr3 2393374 2393479 -225131099 + MIR3 SINE MIR 85 206 -2 1097 294 88 44 chr3 2394662 2395288 -225129290 - L2 LINE L2 -271 3042 2369 237 392 64 8 chr3 2395312 2395437 -225129141 + L2 LINE L2 2817 2948 -366 * 435 299 8 0 chr3 2395434 2395561 -225129017 - L2 LINE L2 -956 2358 2231 338 261 112 25 chr3 2395576 2395737 -225128841 - L2 LINE L2 -1231 2083 1909 25 31 0 0 chr3 2395954 2395986 -225128592 + AT_rich Low_complexity Low_complexity 1 32 0 806 71 8 0 chr3 2396016 2396143 -225128435 + (GGAA)n Simple_repeat Simple_repeat 1 128 0 263 28 28 0 chr3 2396363 2396399 -225128179 + (TTTA)n Simple_repeat Simple_repeat 1 37 0 727 179 0 0 chr3 2396404 2396521 -225128057 - FLAM_C SINE Alu -16 117 1 235 280 85 17 chr3 2397465 2397583 -225126995 + MER117 DNA MER1_type 7 132 -65 21 36 0 0 chr3 2397831 2397859 -225126719 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 2399339 2399361 -225125217 + AT_rich Low_complexity Low_complexity 1 22 0 202 93 23 23 chr3 2399554 2399597 -225124981 + (TA)n Simple_repeat Simple_repeat 1 43 0 396 0 0 0 chr3 2400898 2400942 -225123636 + (TG)n Simple_repeat Simple_repeat 2 45 0 342 0 0 0 chr3 2400941 2400979 -225123599 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 348 165 0 28 chr3 2401241 2401350 -225123228 + (TTA)n Simple_repeat Simple_repeat 1 106 0 187 349 0 24 chr3 2401412 2401495 -225123083 - L2 LINE L2 -2421 893 813 2308 58 0 3 chr3 2402060 2402368 -225122210 + AluY SINE Alu 1 307 -4 280 98 49 0 chr3 2402719 2402780 -225121798 + CT-rich Low_complexity Low_complexity 1 64 0 241 382 38 0 chr3 2403217 2403348 -225121230 + L3b LINE CR1 1327 1462 -121 353 243 99 40 chr3 2404854 2405006 -225119572 + LTR37B LTR ERV1 236 396 -72 1715 179 122 24 chr3 2406989 2407414 -225117164 + MLT1C LTR MaLR 1 467 0 210 280 194 32 chr3 2407613 2407706 -225116872 - L2 LINE L2 -24 3248 3141 918 277 93 34 chr3 2407794 2408115 -225116463 + LTR16C LTR ERVL 149 488 -3 395 333 62 25 chr3 2408173 2408416 -225116162 - L2 LINE L2 -174 3139 2888 272 403 93 5 chr3 2408463 2408679 -225115899 - L2 LINE L2 -529 2785 2551 26 0 0 0 chr3 2409113 2409139 -225115439 + AT_rich Low_complexity Low_complexity 1 26 0 287 265 24 0 chr3 2409734 2409817 -225114761 + (TGAA)n Simple_repeat Simple_repeat 1 85 0 231 320 29 10 chr3 2409874 2409977 -225114601 + MIR SINE MIR 3 107 -155 2943 160 29 60 chr3 2410023 2410655 -225113923 + LTR9 LTR ERV1 1 612 0 204 273 131 10 chr3 2410659 2410758 -225113820 + MIR SINE MIR 147 257 -5 463 237 23 45 chr3 2411644 2411821 -225112757 - Charlie7 DNA MER1_type 0 2612 2440 265 321 161 12 chr3 2411871 2412033 -225112545 + L2 LINE L2 2892 3077 -195 535 314 110 4 chr3 2412464 2412700 -225111878 + MIR SINE MIR 2 262 0 363 274 212 0 chr3 2413600 2413746 -225110832 - MER5B DNA MER1_type 0 178 2 1272 132 5 0 chr3 2414327 2414517 -225110061 + MER41B LTR ERV1 1 191 -444 1380 127 9 27 chr3 2414517 2414648 -225109930 + AluSq SINE Alu 1 128 -185 189 0 0 0 chr3 2414648 2414669 -225109909 + (TA)n Simple_repeat Simple_repeat 2 22 0 1380 127 9 27 chr3 2414669 2414758 -225109820 + AluSq SINE Alu 128 217 -96 2740 156 2 26 chr3 2414793 2415261 -225109317 + MER41B LTR ERV1 179 635 0 2413 118 22 3 chr3 2416768 2417125 -225107453 + THE1B LTR MaLR 1 364 0 312 316 22 7 chr3 2417821 2417960 -225106618 + L1M4 LINE L1 3168 3308 -2838 675 296 121 44 chr3 2418321 2419616 -225104962 + L1M4 LINE L1 3662 5055 -1091 280 313 12 18 chr3 2419815 2419981 -225104597 + (TATATG)n Simple_repeat Simple_repeat 3 167 0 2166 100 7 0 chr3 2420080 2420380 -225104198 + AluY SINE Alu 1 302 -9 198 310 127 35 chr3 2420637 2420779 -225103799 + L2 LINE L2 3150 3304 -9 761 253 42 28 chr3 2420824 2421113 -225103465 - L1M4 LINE L1 -985 5161 4869 1215 194 3 54 chr3 2421223 2421538 -225103040 - AluY SINE Alu 0 311 13 4792 161 17 25 chr3 2421942 2422904 -225101674 + L1P3 LINE L1 10 1069 -5392 6097 94 6 0 chr3 2422904 2423762 -225100816 + L1PA7 LINE L1 5277 6139 -15 419 92 92 6 chr3 2423764 2423927 -225100651 + (TA)n Simple_repeat Simple_repeat 2 178 0 25 31 0 0 chr3 2423927 2423959 -225100619 + AT_rich Low_complexity Low_complexity 1 32 0 455 44 117 0 chr3 2423959 2424096 -225100482 + (TA)n Simple_repeat Simple_repeat 1 153 0 300 228 0 109 chr3 2424097 2424198 -225100380 - L1MC4 LINE L1 -1339 6703 6614 613 130 5 38 chr3 2424212 2424397 -225100181 + (TA)n Simple_repeat Simple_repeat 2 180 0 318 336 0 25 chr3 2424411 2424530 -225100048 - L1MC4 LINE L1 -1339 6703 6588 438 130 28 0 chr3 2424530 2424638 -225099940 + (TA)n Simple_repeat Simple_repeat 1 111 0 10574 128 12 2 chr3 2424738 2426420 -225098158 + L1P3 LINE L1 1269 2968 -3178 7472 86 11 1 chr3 2426398 2427866 -225096712 + L1P3 LINE L1 4287 5764 -390 * 22 0 0 30 chr3 2428149 2428165 -225096413 + AT_rich Low_complexity Low_complexity 1 16 -16 2232 58 3 48 chr3 2428165 2428478 -225096100 - AluY SINE Alu 0 311 13 22 0 0 30 chr3 2428478 2428494 -225096084 + AT_rich Low_complexity Low_complexity 16 32 0 411 269 90 19 chr3 2428597 2428753 -225095825 + MIR SINE MIR 20 186 -76 26 0 0 0 chr3 2429956 2429982 -225094596 + AT_rich Low_complexity Low_complexity 1 26 0 312 172 0 16 chr3 2429989 2430053 -225094525 - L1MD2 LINE L1 -22 6337 6275 4977 212 44 20 chr3 2430061 2431541 -225093037 + L1MB7 LINE L1 3946 5450 -724 2855 203 50 14 chr3 2431545 2432072 -225092506 + L1MB7 LINE L1 5488 6045 -139 183 42 0 0 chr3 2432072 2432096 -225092482 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 2855 203 50 14 chr3 2432096 2432234 -225092344 + L1MB7 LINE L1 6045 6177 -7 23 54 0 0 chr3 2432534 2432571 -225092007 + AT_rich Low_complexity Low_complexity 1 37 0 2041 149 0 0 chr3 2432711 2433013 -225091565 + AluSq SINE Alu 1 302 -11 23111 32 7 0 chr3 2435096 2438307 -225086271 - L1P1 LINE L1 -383 5772 2544 3886 245 51 58 chr3 2438604 2440167 -225084411 - L1ME1 LINE L1 -246 5920 4390 1219 186 113 15 chr3 2440167 2440464 -225084114 + AluJb SINE Alu 1 312 0 3886 245 51 58 chr3 2440464 2441192 -225083386 - L1ME1 LINE L1 -1776 4390 3658 180 0 0 0 chr3 2441498 2441518 -225083060 + (CA)n Simple_repeat Simple_repeat 2 21 0 539 151 41 41 chr3 2443255 2443401 -225081177 + Charlie5 DNA MER1_type 2417 2562 -50 1107 30 0 0 chr3 2443452 2443586 -225080992 - L1PA4 LINE L1 -4 6151 6018 22 56 0 0 chr3 2443652 2443688 -225080890 + AT_rich Low_complexity Low_complexity 1 36 0 1503 176 36 39 chr3 2443837 2444144 -225080434 + AluJo SINE Alu 7 312 0 1970 154 81 8 chr3 2444712 2445081 -225079497 - MSTD LTR MaLR 0 396 1 42247 53 4 1 chr3 2445505 2451622 -225072956 + L1PA4 LINE L1 19 6155 0 1605 118 4 4 chr3 2452089 2452326 -225072252 - L1PA15 LINE L1 -3 6162 5926 1685 137 5 2 chr3 2452376 2452643 -225071935 - L1PA15 LINE L1 -237 5929 5654 216 326 119 26 chr3 2452651 2452844 -225071734 + MIR SINE MIR 52 262 0 577 321 33 23 chr3 2454006 2454399 -225070179 + L1MCc LINE L1 1140 1536 -4887 247 286 71 11 chr3 2454392 2454675 -225069903 + L1M4 LINE L1 3106 3405 -2741 * 8568 208 28 19 chr3 2454683 2456759 -225067819 - L1 LINE L1 -1763 5085 2987 4212 120 5 13 chr3 2456759 2457376 -225067202 + LTR9 LTR ERV1 1 612 0 8568 208 28 19 chr3 2457376 2457394 -225067184 - L1 LINE L1 -3861 2987 2971 579 217 1 35 chr3 2457518 2457745 -225066833 - L1 LINE L1 -3896 2952 2735 2487 269 61 71 chr3 2457745 2458829 -225065749 + L1M4 LINE L1 3535 4596 -1550 1233 175 55 7 chr3 2458829 2459138 -225065440 - MER33 DNA MER1_type 0 324 1 2487 269 61 71 chr3 2459138 2459785 -225064793 + L1M4 LINE L1 4596 5248 -898 824 199 70 25 chr3 2459805 2460006 -225064572 - LTR50 LTR ERVL -585 210 1 299 189 0 0 chr3 2460010 2460063 -225064515 + HsTC2 DNA Tc2 1841 1893 -5 1700 174 0 0 chr3 2461675 2461976 -225062602 - AluJb SINE Alu 0 301 1 26 30 0 0 chr3 2462131 2462164 -225062414 + AT_rich Low_complexity Low_complexity 1 33 0 562 302 62 18 chr3 2462442 2462783 -225061795 + HAL1 LINE L1 663 1018 -1489 4077 210 76 49 chr3 2463214 2464974 -225059604 + MER52A LTR ERV1 1 1743 -12 24 53 0 0 chr3 2466214 2466252 -225058326 + AT_rich Low_complexity Low_complexity 1 38 0 316 286 133 41 chr3 2466277 2466378 -225058200 - MIR SINE MIR -15 247 157 1550 222 25 73 chr3 2466378 2466909 -225057669 - MLT1D LTR MaLR 0 505 1 316 286 133 41 chr3 2466909 2467003 -225057575 - MIR SINE MIR -105 157 34 389 307 67 11 chr3 2467494 2467673 -225056905 + MIR SINE MIR 63 251 -11 1721 136 0 0 chr3 2468427 2468670 -225055908 - AluSq SINE Alu -16 297 55 470 181 0 43 chr3 2468790 2468978 -225055600 + (TA)n Simple_repeat Simple_repeat 1 180 0 974 225 36 0 chr3 2469130 2469352 -225055226 - LTR49 LTR ERV1 0 595 366 1211 145 86 23 chr3 2469369 2469590 -225054988 - AluJo SINE Alu -14 298 64 1171 141 20 0 chr3 2469590 2469789 -225054789 - LTR29 LTR ERV1 -230 392 190 396 108 95 14 chr3 2469794 2469868 -225054710 - LTR29 LTR ERV1 -392 230 151 366 271 9 0 chr3 2469884 2469991 -225054587 - MER34 LTR ERV1 -434 108 1 259 310 0 109 chr3 2470291 2470465 -225054113 + MIR SINE MIR 37 191 -71 1478 290 92 56 chr3 2470929 2471913 -225052665 - LTR28 LTR ERV1 0 1020 1 2446 65 3 7 chr3 2471963 2472272 -225052306 + AluY SINE Alu 1 308 -3 23 33 0 0 chr3 2472412 2472442 -225052136 + AT_rich Low_complexity Low_complexity 1 30 0 3491 130 14 40 chr3 2472481 2473106 -225051472 + MER4B LTR ERV1 2 610 0 1994 134 0 26 chr3 2473202 2473508 -225051070 - AluSq SINE Alu -15 298 1 275 59 0 0 chr3 2474229 2474263 -225050315 - MER21B LTR ERV1 -158 705 672 604 216 35 0 chr3 2474297 2474413 -225050165 - MER101B LTR ERV1 -450 120 1 386 234 79 106 chr3 2474479 2474782 -225049796 + L1ME4a LINE L1 5764 6058 -63 2150 106 3 3 chr3 2474854 2475138 -225049440 + AluSq SINE Alu 3 286 -27 1405 188 65 53 chr3 2475368 2475695 -225048883 - MER21B LTR ERV1 -1 862 529 2520 205 43 76 chr3 2475695 2475721 -225048857 + MER72 LTR ERV1 1 26 -696 2531 59 0 3 chr3 2475721 2476026 -225048552 + AluY SINE Alu 1 304 -7 2520 205 43 76 chr3 2476026 2476746 -225047832 + MER72 LTR ERV1 26 722 0 1405 188 65 53 chr3 2476746 2476774 -225047804 - MER21B LTR ERV1 -334 529 503 1137 163 0 100 chr3 2476782 2477033 -225047545 - MER21B LTR ERV1 -637 226 1 23 54 0 0 chr3 2477438 2477475 -225047103 + AT_rich Low_complexity Low_complexity 1 37 0 387 60 0 0 chr3 2478307 2478357 -225046221 + (GGGAA)n Simple_repeat Simple_repeat 1 50 0 332 349 48 26 chr3 2478781 2479010 -225045568 + L2 LINE L2 3077 3310 -3 562 286 65 35 chr3 2480390 2480589 -225043989 - MIR SINE MIR 0 262 58 220 304 0 18 chr3 2481033 2481089 -225043489 - L2 LINE L2 -97 3175 3121 207 0 0 0 chr3 2481134 2481157 -225043421 + (TG)n Simple_repeat Simple_repeat 1 23 0 515 344 29 16 chr3 2482178 2482422 -225042156 - MIR SINE MIR -10 252 6 1271 165 36 14 chr3 2482520 2482853 -225041725 - MER88 LTR ERVL 0 464 43 881 228 0 0 chr3 2482868 2483026 -225041552 - AluJb SINE Alu -18 294 137 276 204 41 10 chr3 2483061 2483159 -225041419 + (TA)n Simple_repeat Simple_repeat 1 101 0 947 286 34 67 chr3 2483536 2483907 -225040671 - HAL1b LINE L1 -450 898 549 1928 128 6 39 chr3 2483907 2484219 -225040359 - AluSx SINE Alu -10 302 1 947 286 34 67 chr3 2484219 2484400 -225040178 - HAL1b LINE L1 -799 549 364 27 0 0 0 chr3 2484414 2484441 -225040137 + AT_rich Low_complexity Low_complexity 1 27 0 1901 181 52 11 chr3 2484563 2485027 -225039551 + L1P LINE L1 1246 1728 -4418 887 83 0 8 chr3 2485009 2485142 -225039436 + L1P LINE L1 2380 2511 -3635 * 16457 37 1 1 chr3 2485136 2487172 -225037406 - L1PA2 LINE L1 -2134 4012 1978 11554 29 0 1 chr3 2487172 2489348 -225035230 + L1PA2 LINE L1 4001 6155 0 14901 99 14 6 chr3 2489350 2491544 -225033034 + L1P LINE L1 2500 4709 -1437 528 304 94 24 chr3 2491629 2492010 -225032568 - L1MC/D LINE L1 -2084 5724 5317 366 297 82 15 chr3 2492092 2492287 -225032291 - L1MC/D LINE L1 -917 5229 5022 369 268 41 24 chr3 2492287 2492410 -225032168 + MIR SINE MIR 82 206 -56 915 194 23 23 chr3 2492423 2492598 -225031980 + AluJo SINE Alu 1 175 -137 2201 74 0 0 chr3 2494123 2494440 -225030138 - AluY SINE Alu 0 317 1 2272 83 27 10 chr3 2494535 2494835 -225029743 + AluSx SINE Alu 1 305 -7 3894 150 21 3 chr3 2495293 2495966 -225028612 + MER6 DNA MER2_type 181 865 0 908 208 69 12 chr3 2495971 2496097 -225028481 - L1ME LINE L1 -349 5817 5700 2131 128 0 0 chr3 2496097 2496395 -225028183 - AluSq SINE Alu -15 298 1 908 208 69 12 chr3 2496395 2496513 -225028065 - L1ME LINE L1 -466 5700 5559 * 1948 147 0 3 chr3 2496497 2496811 -225027767 + L1P LINE L1 5 317 -5829 608 241 6 6 chr3 2498248 2498414 -225026164 - L1 LINE L1 -1222 4924 4759 1356 130 43 9 chr3 2498416 2498646 -225025932 - MSTA LTR MaLR 0 428 191 1994 121 7 7 chr3 2498646 2498944 -225025634 - AluSq SINE Alu -15 298 1 2390 118 25 3 chr3 2500923 2501279 -225023299 + THE1B LTR MaLR 1 364 0 264 322 138 0 chr3 2501812 2501964 -225022614 - MIR SINE MIR -3 259 87 3243 69 0 4 chr3 2502415 2502867 -225021711 + L1P LINE L1 4497 4946 -1200 503 152 11 22 chr3 2502969 2503061 -225021517 - MER77 LTR ERV1 -148 457 367 405 0 0 0 chr3 2503093 2503138 -225021440 + (TG)n Simple_repeat Simple_repeat 2 46 0 398 154 154 0 chr3 2503149 2503259 -225021319 - L1MC4a LINE L1 -1382 6426 6300 421 226 168 13 chr3 2503344 2503499 -225021079 - L1MC3 LINE L1 -1521 6264 6086 1908 145 16 3 chr3 2503500 2503804 -225020774 + AluJb SINE Alu 1 308 -4 338 206 0 0 chr3 2503807 2503875 -225020703 + L1MC4 LINE L1 6636 6703 -1339 577 225 85 84 chr3 2504058 2504449 -225020129 - MSTB2 LTR MaLR -13 444 1 220 336 82 55 chr3 2504462 2504572 -225020006 - MIR3 SINE MIR -93 115 3 6776 67 8 5 chr3 2504725 2506388 -225018190 - L1PA7 LINE L1 -16 6138 4475 211 197 45 0 chr3 2511709 2511775 -225012803 + (CCAA)n Simple_repeat Simple_repeat 2 70 0 25 0 0 0 chr3 2512284 2512309 -225012269 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr3 2516844 2516866 -225007712 + AT_rich Low_complexity Low_complexity 1 22 0 192 111 0 0 chr3 2516945 2516981 -225007597 + (TG)n Simple_repeat Simple_repeat 2 37 0 26 0 0 0 chr3 2517070 2517096 -225007482 + AT_rich Low_complexity Low_complexity 1 26 0 716 81 52 17 chr3 2517148 2517320 -225007258 + (CAAA)n Simple_repeat Simple_repeat 2 179 0 216 0 0 0 chr3 2517738 2517762 -225006816 + (T)n Simple_repeat Simple_repeat 1 24 0 183 42 0 0 chr3 2518398 2518422 -225006156 + (TTTTC)n Simple_repeat Simple_repeat 1 24 0 4456 143 191 16 chr3 2523393 2524273 -225000305 + L1PBa LINE L1 772 1862 -5001 2363 90 0 3 chr3 2524273 2524573 -225000005 + AluY SINE Alu 1 299 -12 4456 143 191 16 chr3 2524573 2524730 -224999848 + L1PBa LINE L1 1862 1990 -4873 246 192 0 0 chr3 2526737 2526789 -224997789 + A-rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr3 2526933 2526956 -224997622 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 2528516 2528538 -224996040 + AT_rich Low_complexity Low_complexity 1 22 0 322 297 0 0 chr3 2532718 2532809 -224991769 + L1MC4 LINE L1 6613 6703 -1339 198 0 0 0 chr3 2532862 2532884 -224991694 + (TA)n Simple_repeat Simple_repeat 2 23 0 811 84 0 19 chr3 2634256 2634363 -224890215 + FLAM_A SINE Alu 22 126 -16 3298 117 10 2 chr3 2634408 2634906 -224889672 + L1PB3 LINE L1 5650 6151 -3 212 342 13 0 chr3 2635245 2635324 -224889254 + MIR SINE MIR 70 149 -59 1894 128 16 26 chr3 2636145 2636451 -224888127 + AluSx SINE Alu 1 303 -9 533 218 247 6 chr3 2636451 2636621 -224887957 + MIR SINE MIR 51 261 -1 352 278 32 24 chr3 2637076 2637202 -224887376 + MIR SINE MIR 20 146 -116 279 284 0 0 chr3 2639014 2639088 -224885490 + G-rich Low_complexity Low_complexity 1 74 0 3359 134 107 6 chr3 2640567 2641201 -224883377 + Tigger1 DNA MER2_type 63 760 -1658 * 7667 128 30 8 chr3 2641192 2642504 -224882074 + Tigger1 DNA MER2_type 1079 2418 0 2365 123 5 32 chr3 2642833 2643207 -224881371 + THE1B LTR MaLR 1 364 0 1742 190 7 3 chr3 2646718 2647013 -224877565 - AluSx SINE Alu -16 296 1 28 0 0 0 chr3 2647061 2647089 -224877489 + AT_rich Low_complexity Low_complexity 1 28 0 372 363 57 6 chr3 2647197 2647354 -224877224 + MIR3 SINE MIR 20 184 -24 2162 112 3 0 chr3 2647542 2647837 -224876741 - AluSp SINE Alu -17 296 1 276 87 0 43 chr3 2648449 2648495 -224876083 - L2 LINE L2 -75 3238 3195 520 281 67 12 chr3 2649207 2649371 -224875207 + MER5B DNA MER1_type 6 178 0 2093 121 0 0 chr3 2649785 2650090 -224874488 - AluSx SINE Alu 0 305 1 2220 112 0 13 chr3 2651091 2651394 -224873184 + AluSx SINE Alu 1 299 -13 2180 187 74 71 chr3 2652182 2652777 -224871801 - L1MC3 LINE L1 0 7785 7189 291 262 24 12 chr3 2652778 2652862 -224871716 - MLT1F1 LTR MaLR -443 124 40 298 163 0 0 chr3 2652866 2652915 -224871663 - L1MC3 LINE L1 -692 7093 7045 315 365 0 0 chr3 2652915 2653030 -224871548 + MIR3 SINE MIR 71 185 -23 2289 112 0 0 chr3 2653186 2653489 -224871089 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr3 2653517 2653540 -224871038 + AT_rich Low_complexity Low_complexity 1 23 0 1002 146 189 5 chr3 2653703 2653888 -224870690 + MER20 DNA MER1_type 1 219 0 203 79 26 0 chr3 2654731 2654769 -224869809 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 376 303 141 15 chr3 2655787 2655985 -224868593 + MIR SINE MIR 40 262 0 186 293 35 0 chr3 2656692 2656750 -224867828 - MIR3 SINE MIR -37 171 112 222 338 13 0 chr3 2657479 2657556 -224867022 + MIR SINE MIR 68 145 -63 232 222 123 0 chr3 2658457 2658538 -224866040 - MIR3 SINE MIR -16 192 102 202 296 14 28 chr3 2658727 2658798 -224865780 - MIR SINE MIR -119 89 20 285 217 0 17 chr3 2659423 2659483 -224865095 + MER91 DNA MER1_type 2 60 -80 1881 72 103 4 chr3 2659837 2660099 -224864479 - AluSc SINE Alu -17 292 5 212 315 23 62 chr3 2660170 2660299 -224864279 + MIR SINE MIR 2 133 -75 22 0 0 0 chr3 2660334 2660356 -224864222 + AT_rich Low_complexity Low_complexity 1 22 0 2542 53 0 22 chr3 2660747 2661065 -224863513 - AluY SINE Alu 0 311 1 314 245 96 11 chr3 2661347 2661441 -224863137 - MER69A DNA AcHobo 0 177 76 1798 191 68 28 chr3 2661441 2661642 -224862936 + L1MD2 LINE L1 5944 6135 -224 2268 107 3 0 chr3 2661642 2661952 -224862626 + AluSx SINE Alu 1 311 -1 1798 191 68 28 chr3 2661952 2662149 -224862429 + L1MD2 LINE L1 6135 6358 -1 248 307 44 18 chr3 2662154 2662268 -224862310 - MER69A DNA AcHobo -60 117 1 253 348 38 52 chr3 2663093 2663303 -224861275 + L2 LINE L2 2564 2770 -544 545 268 87 70 chr3 2663495 2663794 -224860784 + MER5C DNA MER1_type 21 324 0 530 241 195 0 chr3 2664070 2664244 -224860334 + MIR SINE MIR 49 256 -6 3547 152 48 2 chr3 2664299 2664905 -224859673 - L1MB3 LINE L1 0 6183 5550 2130 116 3 16 chr3 2664906 2665216 -224859362 - AluSx SINE Alu -3 309 4 236 250 62 38 chr3 2666010 2666090 -224858488 + MIR SINE MIR 46 127 -81 2308 97 0 3 chr3 2666194 2666504 -224858074 + AluY SINE Alu 1 309 -2 206 310 113 0 chr3 2666639 2666710 -224857868 - MIR SINE MIR -155 107 29 760 222 102 9 chr3 2667059 2667275 -224857303 - MIR SINE MIR -13 249 14 981 195 20 20 chr3 2667715 2667915 -224856663 + MER20 DNA MER1_type 1 200 -19 210 333 0 43 chr3 2667974 2668043 -224856535 + L3 LINE CR1 1508 1573 -4 2003 140 10 0 chr3 2668618 2668911 -224855667 - AluSx SINE Alu -16 296 1 339 314 58 19 chr3 2669107 2669263 -224855315 + MIR3 SINE MIR 39 200 -8 939 117 7 15 chr3 2669421 2669558 -224855020 + AluJb SINE Alu 1 136 -176 1900 167 0 0 chr3 2669558 2669846 -224854732 + AluJb SINE Alu 6 293 -19 261 0 0 0 chr3 2669865 2669894 -224854684 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2169 100 7 0 chr3 2669896 2670176 -224854402 - AluSx SINE Alu -30 282 1 257 109 455 0 chr3 2670627 2670682 -224853896 - MADE1 DNA Mariner 0 80 1 1856 145 35 0 chr3 2671071 2671187 -224853391 + AluSx SINE Alu 1 112 -200 387 0 0 0 chr3 2671187 2671230 -224853348 + (TAA)n Simple_repeat Simple_repeat 2 44 0 1856 145 35 0 chr3 2671230 2671402 -224853176 + AluSx SINE Alu 112 299 -13 424 246 53 18 chr3 2672426 2672540 -224852038 - MIR3 SINE MIR -77 131 14 1263 124 0 43 chr3 2673203 2673389 -224851189 - AluSx SINE Alu -134 178 1 685 224 39 86 chr3 2673520 2673775 -224850803 - MER112 DNA MER1_type -12 248 6 299 269 86 30 chr3 2673862 2674096 -224850482 - L1ME4a LINE L1 -2 6119 5873 1029 186 9 24 chr3 2674190 2674258 -224850320 - MER3 DNA MER1_type -1 208 141 1936 143 7 7 chr3 2674258 2674545 -224850033 - AluSx SINE Alu -25 287 1 1029 186 9 24 chr3 2674545 2674686 -224849892 - MER3 DNA MER1_type -68 141 2 248 385 57 0 chr3 2676270 2676392 -224848186 - MIR SINE MIR -113 149 21 213 39 0 0 chr3 2677588 2677614 -224846964 + (CAA)n Simple_repeat Simple_repeat 2 27 0 276 284 0 68 chr3 2678800 2678888 -224845690 + L2 LINE L2 3168 3249 -23 2240 100 0 3 chr3 2681684 2681973 -224842605 - AluSx SINE Alu -24 288 1 209 173 154 19 chr3 2681993 2682045 -224842533 - L2 LINE L2 -3 3310 3252 185 0 0 39 chr3 2682132 2682158 -224842420 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2097 109 10 7 chr3 2682263 2682557 -224842021 - AluSq SINE Alu -18 295 1 376 249 115 91 chr3 2682804 2682998 -224841580 + L1ME4a LINE L1 5631 5834 -287 1887 135 7 0 chr3 2682998 2683279 -224841299 - AluSg SINE Alu -15 295 13 376 249 115 91 chr3 2683279 2683337 -224841241 + L1ME4a LINE L1 5834 5889 -232 277 180 16 141 chr3 2683425 2683553 -224841025 - MLT1H LTR MaLR 0 549 438 1148 198 105 0 chr3 2683974 2684232 -224840346 + L1MB8 LINE L1 4789 5073 -1073 1675 112 0 16 chr3 2684240 2684482 -224840096 - AluSg/x SINE Alu -2 308 71 611 264 7 14 chr3 2684666 2684835 -224839743 + AluY SINE Alu 134 301 0 641 133 23 8 chr3 2684835 2684963 -224839615 + L1MB8 LINE L1 5187 5316 -830 833 199 6 0 chr3 2684965 2685121 -224839457 + FRAM SINE Alu 1 40 0 4457 183 19 25 chr3 2685124 2686004 -224838574 + L1MB8 LINE L1 5304 6178 0 2004 114 0 24 chr3 2686291 2686600 -224837978 - AluSx SINE Alu 0 304 3 216 144 22 0 chr3 2686715 2686761 -224837817 - MIR SINE MIR -62 146 99 480 62 37 0 chr3 2687033 2687114 -224837464 + (TA)n Simple_repeat Simple_repeat 1 84 0 1835 158 18 0 chr3 2687124 2687408 -224837170 - AluJo SINE Alu -23 289 1 858 168 0 0 chr3 2688269 2688394 -224836184 - AluJb SINE Alu -187 125 1 1501 195 3 36 chr3 2688438 2688746 -224835832 - AluJo SINE Alu -14 298 1 2266 104 0 0 chr3 2688969 2689267 -224835311 + AluSx SINE Alu 12 309 -3 670 178 8 0 chr3 2689476 2689594 -224834984 + MLT1D LTR MaLR 387 505 0 546 278 131 0 chr3 2689934 2690110 -224834468 + MIR SINE MIR 32 230 -32 180 77 0 0 chr3 2690185 2690211 -224834367 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1738 139 58 41 chr3 2690550 2690845 -224833733 - AluSx SINE Alu -12 300 1 2812 231 45 80 chr3 2691311 2691360 -224833218 - L1ME1 LINE L1 -6 6160 6111 1953 143 153 42 chr3 2691360 2691671 -224832907 + MSTA LTR MaLR 1 365 -63 2437 52 0 29 chr3 2691671 2691977 -224832601 - AluY SINE Alu -14 297 1 1953 143 153 42 chr3 2691977 2692050 -224832528 + MSTA LTR MaLR 365 428 0 2812 231 45 80 chr3 2692050 2692233 -224832345 - L1ME1 LINE L1 -55 6111 5923 2187 113 0 0 chr3 2692233 2692526 -224832052 - AluSg SINE Alu -17 293 1 2812 231 45 80 chr3 2692526 2693029 -224831549 - L1ME1 LINE L1 -243 5923 5404 2046 131 7 0 chr3 2693029 2693320 -224831258 + AluSg SINE Alu 1 293 -17 2812 231 45 80 chr3 2693320 2693382 -224831196 - L1ME1 LINE L1 -762 5404 5411 1522 193 14 14 chr3 2693382 2693667 -224830911 - AluJb SINE Alu -27 285 1 2812 231 45 80 chr3 2693667 2693725 -224830853 - L1ME1 LINE L1 -754 5412 5353 3029 249 57 23 chr3 2693769 2694799 -224829779 - L1ME1 LINE L1 -1790 4356 3292 308 64 21 0 chr3 2694827 2694874 -224829704 + (TC)n Simple_repeat Simple_repeat 1 48 0 1022 210 189 7 chr3 2694874 2694950 -224829628 - MER2 DNA MER2_type 0 344 283 2314 92 0 0 chr3 2694950 2695245 -224829333 + AluSx SINE Alu 5 299 -13 1022 210 189 7 chr3 2695245 2695459 -224829119 - MER2 DNA MER2_type -61 283 1 1761 97 45 0 chr3 2696047 2696315 -224828263 + AluSq SINE Alu 25 304 -9 4246 91 21 21 chr3 2697923 2698382 -224826196 - PABL_A LTR ERV1 -9 651 190 2343 93 0 7 chr3 2698382 2698692 -224825886 + AluSx SINE Alu 1 308 -4 4246 91 21 21 chr3 2698692 2698883 -224825695 - PABL_A LTR ERV1 -469 191 1 23 0 0 0 chr3 2699354 2699377 -224825201 + AT_rich Low_complexity Low_complexity 1 23 0 583 99 148 10 chr3 2699382 2699483 -224825095 - FLAM_C SINE Alu -24 119 5 860 131 77 0 chr3 2699532 2699662 -224824916 + FRAM SINE Alu 20 159 -17 293 367 17 0 chr3 2699851 2699971 -224824607 - MIR SINE MIR -133 129 8 534 236 48 36 chr3 2700259 2700424 -224824154 + MER5B DNA MER1_type 11 177 -1 688 129 103 189 chr3 2700651 2700866 -224823712 - MER33 DNA MER1_type -2265 320 145 1752 171 20 3 chr3 2700866 2701159 -224823419 + AluJb SINE Alu 1 298 -14 688 129 103 189 chr3 2701159 2701293 -224823285 - MER33 DNA MER1_type -2440 145 1 7603 15 0 0 chr3 2701529 2702762 -224821816 + L1HS LINE L1 4923 6155 0 1683 161 17 30 chr3 2703334 2703633 -224820945 + AluJb SINE Alu 1 295 -17 474 204 160 18 chr3 2705018 2705243 -224819335 - MER112 DNA MER1_type 0 260 4 1474 206 109 43 chr3 2705850 2706356 -224818222 - MER90 LTR ERV1 -6 608 70 2125 141 13 0 chr3 2706709 2707015 -224817563 - AluJo SINE Alu -2 310 1 212 292 79 22 chr3 2707146 2707235 -224817343 + MIR3 SINE MIR 90 183 -25 1643 249 190 30 chr3 2707755 2708582 -224815996 - HAL1 LINE L1 -209 2298 1340 383 306 89 0 chr3 2708586 2708867 -224815711 - HAL1 LINE L1 -1218 1289 984 432 288 113 19 chr3 2709054 2709266 -224815312 - HAL1 LINE L1 -1842 665 434 206 342 57 19 chr3 2709608 2709766 -224814812 + L2 LINE L2 2917 3080 -192 1877 154 3 13 chr3 2709783 2710094 -224814484 - AluJb SINE Alu -4 308 1 2189 71 39 3 chr3 2710866 2711149 -224813429 + AluY SINE Alu 1 293 -18 487 227 302 0 chr3 2711151 2711323 -224813255 + MIR SINE MIR 29 252 -10 220 214 18 18 chr3 2711367 2711423 -224813155 + (CA)n Simple_repeat Simple_repeat 1 56 0 427 315 34 0 chr3 2711470 2711616 -224812962 - MER117 DNA MER1_type -36 161 11 388 352 49 6 chr3 2711918 2712080 -224812498 - MIR SINE MIR -13 249 81 714 254 215 0 chr3 2712348 2712553 -224812025 - MIR SINE MIR -8 254 6 462 306 0 0 chr3 2713272 2713383 -224811195 + MER81 DNA DNA 4 114 0 240 274 140 18 chr3 2713555 2713661 -224810917 - L1MC/D LINE L1 -2273 5535 5401 1682 152 72 4 chr3 2713661 2713938 -224810640 + AluSx SINE Alu 1 296 -16 240 274 140 18 chr3 2713938 2713995 -224810583 - L1MC/D LINE L1 -2407 5401 5352 265 368 60 8 chr3 2715062 2715179 -224809399 - L2 LINE L2 0 3313 3191 2430 69 3 0 chr3 2715289 2715593 -224808985 + AluY SINE Alu 1 305 -6 258 282 0 113 chr3 2716262 2716386 -224808192 + MIR3 SINE MIR 87 196 -12 428 255 135 20 chr3 2716896 2717096 -224807482 + MIR SINE MIR 31 253 -9 1055 130 0 34 chr3 2722217 2722394 -224802184 - AluSg/x SINE Alu -15 294 124 256 267 67 33 chr3 2725547 2725637 -224798941 - MIR SINE MIR -157 105 13 1890 151 18 0 chr3 2725877 2726162 -224798416 - AluJb SINE Alu -14 298 9 235 254 211 7 chr3 2727058 2727200 -224797378 + L1MC/D LINE L1 4531 4701 -1445 275 282 57 0 chr3 2727237 2727361 -224797217 + L1MC/D LINE L1 5695 5825 -1983 245 295 105 11 chr3 2727948 2728043 -224796535 + L3 LINE CR1 1196 1299 -278 1688 188 40 3 chr3 2728134 2728459 -224796119 - MER1B DNA MER1_type 0 337 1 563 280 13 13 chr3 2728712 2728862 -224795716 - MIR SINE MIR -79 183 34 360 232 36 94 chr3 2728866 2728895 -224795683 - L2 LINE L2 -2 3311 3282 2557 98 30 6 chr3 2728895 2729261 -224795317 + THE1C LTR MaLR 1 375 0 360 232 36 94 chr3 2729261 2729369 -224795209 - L2 LINE L2 -31 3282 3182 26 0 0 0 chr3 2730430 2730456 -224794122 + AT_rich Low_complexity Low_complexity 1 26 0 547 300 143 29 chr3 2730727 2731271 -224793307 + L1ME LINE L1 4633 5238 -908 348 236 183 21 chr3 2731307 2731498 -224793080 + L1ME LINE L1 5296 5517 -2291 1688 80 0 0 chr3 2731540 2731753 -224792825 - AluSg SINE Alu -97 213 1 292 211 273 19 chr3 2731888 2732049 -224792529 + L1MC4a LINE L1 5748 5949 -1859 22 0 0 0 chr3 2733430 2733452 -224791126 + AT_rich Low_complexity Low_complexity 1 22 0 1805 164 7 20 chr3 2733452 2733750 -224790828 - AluJb SINE Alu -18 294 1 1095 267 70 26 chr3 2733779 2734344 -224790234 + L2 LINE L2 2570 3154 -159 21 36 0 0 chr3 2734377 2734405 -224790173 + AT_rich Low_complexity Low_complexity 1 28 0 199 298 0 0 chr3 2734482 2734539 -224790039 + L2 LINE L2 3255 3311 -2 305 195 26 26 chr3 2734554 2734631 -224789947 + MLT1L LTR MaLR 3 79 -536 365 303 48 0 chr3 2735237 2735402 -224789176 + Charlie8 DNA MER1_type 85 257 -2160 468 0 0 0 chr3 2735416 2735468 -224789110 + (TG)n Simple_repeat Simple_repeat 2 53 0 210 296 59 89 chr3 2736649 2736784 -224787794 + MIR SINE MIR 17 147 -61 626 242 65 107 chr3 2736793 2737148 -224787430 - MLT1I LTR MaLR -7 402 63 201 237 0 0 chr3 2737240 2737299 -224787279 + (TA)n Simple_repeat Simple_repeat 1 59 0 300 290 30 53 chr3 2738027 2738158 -224786420 - L2 LINE L2 -4 3309 3182 293 235 43 17 chr3 2738690 2738805 -224785773 + L1ME LINE L1 5630 5747 -374 330 267 0 11 chr3 2738814 2738904 -224785674 + LTR67 LTR ERVL 460 548 -9 459 63 0 0 chr3 2738904 2738967 -224785611 + (CA)n Simple_repeat Simple_repeat 2 64 0 31 76 0 0 chr3 2739217 2739283 -224785295 + AT_rich Low_complexity Low_complexity 1 66 0 285 296 61 17 chr3 2739635 2739750 -224784828 - MIR SINE MIR -6 256 137 22 35 0 0 chr3 2740228 2740257 -224784321 + AT_rich Low_complexity Low_complexity 1 29 0 811 211 80 0 chr3 2741837 2742012 -224782566 + MLT1D LTR MaLR 4 192 -313 1256 191 17 39 chr3 2742012 2742243 -224782335 + AluJo SINE Alu 1 226 -86 648 222 63 16 chr3 2743150 2743339 -224781239 + MIR SINE MIR 44 241 -21 961 183 121 92 chr3 2743357 2743874 -224780704 + LTR36 LTR ERV1 1 611 0 730 236 220 0 chr3 2744036 2744494 -224780084 + LTR50 LTR ERVL 140 795 0 960 287 89 2 chr3 2744571 2744965 -224779613 + L1ME3A LINE L1 5291 5718 -452 422 78 16 0 chr3 2744965 2745029 -224779549 + MER41B LTR ERV1 481 545 -90 1061 242 66 44 chr3 2745075 2745503 -224779075 + L1ME3A LINE L1 5730 6162 -8 2221 129 3 0 chr3 2745602 2745912 -224778666 - AluSq SINE Alu -2 311 1 209 373 15 0 chr3 2746079 2746146 -224778432 + L2 LINE L2 3198 3265 -7 199 208 260 39 chr3 2746515 2746592 -224777986 + MIR3 SINE MIR 63 156 -52 387 256 53 0 chr3 2746648 2746781 -224777797 - MER117 DNA MER1_type -56 141 2 231 291 0 0 chr3 2746783 2746838 -224777740 + MIR3 SINE MIR 154 208 0 333 274 183 7 chr3 2747745 2747898 -224776680 + MIR3 SINE MIR 15 194 -14 186 283 170 28 chr3 2748274 2748380 -224776198 + MIR3 SINE MIR 84 204 -4 220 324 14 0 chr3 2748625 2748699 -224775879 + (TA)n Simple_repeat Simple_repeat 1 75 0 1889 197 16 101 chr3 2748879 2749426 -224775152 - MLT1D LTR MaLR -2 503 3 360 364 23 6 chr3 2749518 2749694 -224774884 - MIR3 SINE MIR -13 195 17 216 171 0 0 chr3 2750069 2750104 -224774474 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 216 210 65 32 chr3 2750132 2750194 -224774384 - L2 LINE L2 -42 3230 3167 298 347 200 7 chr3 2750214 2750364 -224774214 + MER5A DNA MER1_type 1 179 -10 2734 103 8 5 chr3 2751261 2751648 -224772930 - L1PB1 LINE L1 -1 6150 5763 23 0 0 0 chr3 2751707 2751730 -224772848 + AT_rich Low_complexity Low_complexity 1 23 0 438 333 0 0 chr3 2751738 2751849 -224772729 - L2 LINE L2 -5 3267 3157 959 138 0 7 chr3 2752968 2753113 -224771465 + AluSg/x SINE Alu 136 279 -30 395 259 114 32 chr3 2753508 2753666 -224770912 + MIR3 SINE MIR 38 208 0 3242 138 14 68 chr3 2753832 2754033 -224770545 + LTR26B LTR ERV1 4 214 -317 1604 174 19 47 chr3 2754033 2754350 -224770228 + AluJb SINE Alu 1 308 -4 3242 138 14 68 chr3 2754350 2754706 -224769872 + LTR26B LTR ERV1 214 531 0 817 258 33 16 chr3 2755007 2755189 -224769389 - MER5A DNA MER1_type -4 185 1 1154 164 116 58 chr3 2755274 2755585 -224768993 + MLT1D LTR MaLR 12 340 -165 261 119 48 0 chr3 2755561 2755603 -224768975 - MLT1D LTR MaLR -154 351 308 * 580 294 99 14 chr3 2756432 2756653 -224767925 - MIR SINE MIR -5 257 18 2255 99 3 10 chr3 2756828 2757142 -224767436 - AluSx SINE Alu 0 312 1 993 215 45 0 chr3 2757663 2757863 -224766715 - MER3 DNA MER1_type 0 209 1 311 301 68 20 chr3 2758109 2758255 -224766323 - MIR SINE MIR -61 201 49 337 258 13 0 chr3 2758256 2758343 -224766235 - MIR SINE MIR -92 116 40 442 306 25 13 chr3 2758524 2758681 -224765897 - MIR SINE MIR 0 262 104 5415 129 16 5 chr3 2759735 2760551 -224764027 + L1MC1 LINE L1 5509 6333 0 542 239 43 111 chr3 2760821 2760963 -224763615 + Charlie8 DNA MER1_type 2 123 -218 2145 109 0 50 chr3 2760963 2761284 -224763294 - AluSx SINE Alu -3 309 5 542 239 43 111 chr3 2761284 2761375 -224763203 + Charlie8 DNA MER1_type 123 219 -122 272 375 13 33 chr3 2761678 2761830 -224762748 + MIR3 SINE MIR 21 169 -39 345 232 72 65 chr3 2761886 2762024 -224762554 - MER103 DNA DNA -18 148 10 624 317 176 32 chr3 2763130 2763471 -224761107 + L3 LINE CR1 751 1140 -437 2433 121 22 25 chr3 2763474 2763839 -224760739 - THE1B LTR MaLR 0 364 1 189 288 225 0 chr3 2763931 2764011 -224760567 + L3 LINE CR1 1188 1285 -292 1274 177 42 103 chr3 2764083 2764394 -224760184 - AluJo SINE Alu -20 292 1 1721 170 10 10 chr3 2764409 2764709 -224759869 - AluJo SINE Alu -12 300 1 1928 147 3 13 chr3 2765643 2765956 -224758622 + AluJb SINE Alu 1 310 -2 254 336 70 31 chr3 2766191 2766319 -224758259 - L2 LINE L2 -8 3264 3132 2351 132 33 33 chr3 2767091 2767385 -224757193 + THE1B LTR MaLR 1 297 -67 1994 125 3 14 chr3 2767385 2767682 -224756896 - AluSx SINE Alu -18 294 1 2351 132 33 33 chr3 2767682 2767751 -224756827 + THE1B LTR MaLR 296 364 0 4922 172 27 34 chr3 2769275 2770661 -224753917 - L1MB3 LINE L1 -2 6181 4810 193 276 0 52 chr3 2770771 2770829 -224753749 - MIR3 SINE MIR -146 62 8 439 239 92 23 chr3 2771000 2771130 -224753448 + MLT1J2 LTR MaLR 37 175 -275 349 289 47 57 chr3 2771469 2771680 -224752898 - MLT1I LTR MaLR -26 383 175 2055 109 35 109 chr3 2771680 2772085 -224752493 - THE1C LTR MaLR 0 375 1 747 290 136 18 chr3 2772094 2772535 -224752043 + L2 LINE L2 2821 3313 0 407 300 110 11 chr3 2773853 2774054 -224750524 - MIR SINE MIR -25 237 19 2249 185 41 30 chr3 2775417 2775881 -224748697 + MLT2B1 LTR ERVL 1 469 -51 273 196 21 93 chr3 2775920 2776017 -224748561 - L1MC4 LINE L1 -1339 6703 6614 * 276 170 0 130 chr3 2775931 2776031 -224748547 + L1MC4 LINE L1 6617 6703 -1339 213 175 0 0 chr3 2776031 2776071 -224748507 + (TATG)n Simple_repeat Simple_repeat 4 43 0 422 16 0 109 chr3 2776074 2776138 -224748440 + MLT2B1 LTR ERVL 464 520 0 690 297 72 43 chr3 2776231 2776671 -224747907 - Charlie8 DNA MER1_type -2145 272 1 21 0 0 0 chr3 2777155 2777176 -224747402 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr3 2778497 2778524 -224746054 + (TG)n Simple_repeat Simple_repeat 1 27 0 1291 243 14 3 chr3 2778573 2778857 -224745721 - AluJb SINE Alu -15 287 1 27 49 0 0 chr3 2778857 2778898 -224745680 + AT_rich Low_complexity Low_complexity 1 41 0 798 188 17 104 chr3 2779316 2779556 -224745022 - MER20 DNA MER1_type 0 219 1 1335 215 87 36 chr3 2779677 2780083 -224744495 + MER113 DNA MER1_type? 3 440 -81 4294 139 67 10 chr3 2780083 2780771 -224743807 + LTR8A LTR ERV1 1 727 0 1335 215 87 36 chr3 2780771 2780857 -224743721 + MER113 DNA MER1_type? 440 520 -1 220 286 48 24 chr3 2781088 2781172 -224743406 + MIR SINE MIR 155 240 -22 1988 145 0 16 chr3 2781194 2781497 -224743081 - AluSx SINE Alu -14 298 1 28 0 0 0 chr3 2781497 2781525 -224743053 + AT_rich Low_complexity Low_complexity 1 28 0 577 277 141 5 chr3 2782041 2782247 -224742331 - MIR SINE MIR -6 256 23 1590 142 47 4 chr3 2782263 2782629 -224741949 + LTR47A LTR ERVL 1 436 -16 1953 169 156 5 chr3 2782629 2783001 -224741577 - MSTA LTR MaLR 0 428 1 1590 142 47 4 chr3 2783001 2783019 -224741559 + LTR47A LTR ERVL 436 452 0 307 293 75 34 chr3 2783033 2783180 -224741398 + LTR47A-int LTR ERVL 15 167 -5176 699 171 43 41 chr3 2783322 2783516 -224741062 + LTR49-int LTR ERV1 2009 2290 -2590 1570 181 4 0 chr3 2783533 2783814 -224740764 + MER41B LTR ERV1 1 282 -353 4759 221 82 41 chr3 2783817 2784038 -224740540 + LTR49-int LTR ERV1 891 1101 -3090 892 129 0 30 chr3 2784038 2784196 -224740382 + FLAM_C SINE Alu 1 154 0 4759 221 82 41 chr3 2784196 2785195 -224739383 + LTR49-int LTR ERV1 1101 2165 -2026 1819 116 41 7 chr3 2785195 2785489 -224739089 + MLT2A1 LTR ERVL 1 304 -140 261 0 0 0 chr3 2785509 2785538 -224739040 + (CA)n Simple_repeat Simple_repeat 2 30 0 394 36 18 18 chr3 2785542 2785597 -224738981 + MLT2A1 LTR ERVL 399 453 0 4812 142 47 58 chr3 2785598 2787079 -224737499 + LTR49-int LTR ERV1 4411 6064 -258 2338 148 133 2 chr3 2787091 2787491 -224737087 + LTR47A LTR ERVL 1 452 0 277 209 132 62 chr3 2788898 2789027 -224735551 + MLT1J2 LTR MaLR 3 140 -310 1714 174 98 113 chr3 2789295 2789509 -224735069 + MLT1D LTR MaLR 1 217 -288 3621 158 6 2 chr3 2789509 2790034 -224734544 + MER1A DNA MER1_type 1 527 0 1714 174 98 113 chr3 2790034 2790332 -224734246 + MLT1D LTR MaLR 217 505 0 302 291 122 17 chr3 2790422 2790594 -224733984 - MIR SINE MIR 0 262 73 4187 118 24 5 chr3 2790665 2791256 -224733322 + LTR43 LTR ERV1 1 602 0 214 308 55 62 chr3 2791879 2791951 -224732627 + MIR SINE MIR 72 143 -119 2289 83 48 0 chr3 2791951 2792240 -224732338 + AluSc SINE Alu 1 303 -6 214 308 55 62 chr3 2792240 2792313 -224732265 + MIR SINE MIR 143 216 -46 238 329 0 37 chr3 2792854 2792936 -224731642 + L2 LINE L2 3192 3270 -2 786 216 32 42 chr3 2793189 2793379 -224731199 + MIR SINE MIR 37 224 -38 237 143 24 24 chr3 2793396 2793438 -224731140 + MLT1D LTR MaLR 1 42 -463 1649 183 62 45 chr3 2793446 2793557 -224731021 + MLT2D LTR ERVL 1 109 -305 2393 60 0 13 chr3 2793557 2793856 -224730722 - AluY SINE Alu -16 295 1 1649 183 62 45 chr3 2793856 2793966 -224730612 + MLT2D LTR ERVL 109 216 -198 2775 195 22 68 chr3 2793966 2794608 -224729970 - LTR9 LTR ERV1 0 612 1 1649 183 62 45 chr3 2794608 2794789 -224729789 + MLT2D LTR ERVL 216 411 -3 1185 254 81 47 chr3 2794791 2795236 -224729342 + MLT1D LTR MaLR 46 505 0 234 222 139 28 chr3 2795918 2796026 -224728552 + MER113 DNA MER1_type? 1 120 -401 2076 128 6 10 chr3 2796627 2796971 -224727607 + AluSx SINE Alu 1 343 0 333 183 42 0 chr3 2798708 2798779 -224725799 - MER116 DNA Mariner -6 74 1 1445 258 11 8 chr3 2799205 2799561 -224725017 - MLT1A2 LTR MaLR -14 360 4 671 306 73 25 chr3 2799748 2800271 -224724307 - L1ME4a LINE L1 -224 5897 5350 352 262 69 48 chr3 2800483 2800628 -224723950 - MLT1K LTR MaLR -167 421 274 321 267 11 7 chr3 2800922 2801043 -224723535 + LTR43 LTR ERV1 223 472 -207 253 229 148 0 chr3 2801890 2801951 -224722627 + L2 LINE L2 3201 3270 -2 249 291 0 25 chr3 2801954 2802033 -224722545 + MIR3 SINE MIR 132 208 0 403 296 23 109 chr3 2802204 2802461 -224722117 + MIR SINE MIR 19 253 -9 30 0 0 0 chr3 2803173 2803203 -224721375 + AT_rich Low_complexity Low_complexity 1 30 0 1334 201 0 76 chr3 2803203 2803297 -224721281 - AluJo SINE Alu -32 280 180 1911 182 12 6 chr3 2803297 2803638 -224720940 - MER61A LTR ERV1 0 343 1 1334 201 0 76 chr3 2803638 2803846 -224720732 - AluJo SINE Alu -132 180 1 458 243 87 28 chr3 2804047 2804207 -224720371 + MIR3 SINE MIR 20 180 -48 304 264 110 110 chr3 2804335 2804562 -224720016 + MIR SINE MIR 4 230 -32 1337 155 4 52 chr3 2804563 2804815 -224719763 - THE1B LTR MaLR 0 364 125 4905 67 1 3 chr3 2804815 2805473 -224719105 - THE1B-int LTR MaLR -923 657 1 1997 115 81 32 chr3 2805473 2805820 -224718758 - THE1B LTR MaLR 0 364 1 188 235 0 0 chr3 2805880 2805914 -224718664 + MIR3 SINE MIR 151 184 -24 1904 147 0 13 chr3 2805914 2806214 -224718364 - AluSx SINE Alu -16 296 1 477 40 40 0 chr3 2806372 2806448 -224718130 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 1743 179 37 10 chr3 2806456 2806858 -224717720 - L1ME1 LINE L1 -7 6159 5747 548 228 8 0 chr3 2806902 2807029 -224717549 - L1ME1 LINE L1 -521 5645 5518 1165 239 84 16 chr3 2807039 2807407 -224717171 - MLT1D LTR MaLR 0 505 113 1122 154 58 92 chr3 2807419 2807753 -224716825 + AluJb SINE Alu 1 324 0 475 169 24 0 chr3 2807796 2807879 -224716699 - MLT1D LTR MaLR -417 88 4 1579 189 70 39 chr3 2807890 2808060 -224716518 - L1ME1 LINE L1 -662 5504 5341 2208 124 7 0 chr3 2808060 2808367 -224716211 - AluSx SINE Alu -3 309 1 1579 189 70 39 chr3 2808367 2808775 -224715803 - L1ME1 LINE L1 -825 5341 4902 8102 121 11 0 chr3 2909355 2911408 -224613170 + L1PA5 LINE L1 4092 6154 0 287 350 8 8 chr3 2912137 2912254 -224612324 + L2 LINE L2 3150 3266 -6 1371 172 196 0 chr3 2913415 2913561 -224611017 - AluJo SINE Alu -3 299 183 2123 102 16 7 chr3 2913561 2913864 -224610714 - AluY SINE Alu -5 306 1 1371 172 196 0 chr3 2913864 2913967 -224610611 - AluJo SINE Alu -119 183 1 2279 204 51 44 chr3 2913967 2914517 -224610061 + MLT2B3 LTR ERVL 1 554 0 856 215 82 0 chr3 2914527 2914746 -224609832 - L1ME1 LINE L1 -2929 3217 2981 990 120 0 0 chr3 2914779 2914912 -224609666 - AluSq/x SINE Alu -180 133 1 1010 189 28 35 chr3 2914939 2915087 -224609491 - L1ME1 LINE L1 -3170 2976 2829 1247 218 19 85 chr3 2915087 2915404 -224609174 - AluJb SINE Alu -5 297 2 1010 189 28 35 chr3 2915404 2915509 -224609069 - L1ME1 LINE L1 -3317 2829 2725 507 304 60 0 chr3 2915525 2915693 -224608885 + L1M4 LINE L1 3656 3833 -2313 2296 93 21 0 chr3 2915693 2915984 -224608594 - AluSg1 SINE Alu -12 297 1 1780 85 16 0 chr3 2915984 2916231 -224608347 - PABL_A-int LTR ERV1 -4546 469 219 449 255 10 0 chr3 2916349 2916447 -224608131 - MIR SINE MIR -154 108 10 906 143 0 0 chr3 2918543 2918676 -224605902 + FLAM_C SINE Alu 1 133 -10 2298 88 7 0 chr3 2918682 2918976 -224605602 + AluSp SINE Alu 1 296 -17 2543 40 3 0 chr3 2919406 2919703 -224604875 - AluY SINE Alu -13 298 1 312 27 0 0 chr3 2921737 2921774 -224602804 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 1046 190 56 93 chr3 2923231 2923288 -224601290 - L1M4 LINE L1 -1481 4665 4607 2274 96 3 10 chr3 2923288 2923589 -224600989 + AluSp SINE Alu 1 299 -14 1046 190 56 93 chr3 2923589 2923941 -224600637 - L1M4 LINE L1 -1539 4607 4271 425 316 40 11 chr3 2926583 2926757 -224597821 + MIR SINE MIR 48 226 -36 2607 160 35 56 chr3 2927173 2928052 -224596526 - L1M4 LINE L1 -439 5745 4856 1820 152 7 14 chr3 2928052 2928373 -224596205 - AluJb SINE Alu 0 319 1 249 313 119 0 chr3 2928752 2928819 -224595759 + MIR SINE MIR 15 89 -173 704 171 8 8 chr3 2928821 2928938 -224595640 + FLAM_C SINE Alu 2 118 -25 2235 39 0 4 chr3 2928945 2929204 -224595374 + AluY SINE Alu 40 297 -14 290 224 196 42 chr3 2929250 2929393 -224595185 - L2 LINE L2 -3 3310 3146 180 111 0 0 chr3 2930678 2930705 -224593873 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 217 377 57 0 chr3 2930898 2931020 -224593558 + MIR SINE MIR 39 167 -95 265 333 44 9 chr3 2931146 2931260 -224593318 - MIR3 SINE MIR -24 184 67 1190 242 79 0 chr3 2931295 2931638 -224592940 + L1MD3 LINE L1 3586 3955 -2191 670 193 28 7 chr3 2931667 2931812 -224592766 + MLT2D LTR ERVL 71 218 -196 1488 253 96 11 chr3 2931813 2932354 -224592224 + L1MD3 LINE L1 4774 5360 -786 1575 198 104 18 chr3 2932357 2933414 -224591164 + L1MD3 LINE L1 5464 6428 -1567 321 26 0 0 chr3 2933414 2933452 -224591126 + (CA)n Simple_repeat Simple_repeat 2 39 0 1575 198 104 18 chr3 2933452 2934454 -224590124 + L1MD3 LINE L1 6428 7995 0 313 247 216 6 chr3 2934467 2934629 -224589949 + MIR SINE MIR 67 262 0 287 350 8 8 chr3 2935583 2935700 -224588878 - L2 LINE L2 -6 3266 3150 16467 48 7 2 chr3 2936429 2939142 -224585436 - L1PA5 LINE L1 0 6154 3431 315 125 21 0 chr3 2939192 2939240 -224585338 - MADE1 DNA Mariner 0 80 32 204 318 20 80 chr3 2940188 2940339 -224584239 + MIR SINE MIR 10 151 -111 771 222 13 0 chr3 2940381 2940534 -224584044 + MER63A DNA MER1_type 50 204 -6 204 212 23 23 chr3 2943152 2943200 -224581378 - MIR SINE MIR -106 102 54 502 222 121 38 chr3 2944250 2944489 -224580089 - L1M4 LINE L1 -809 5337 5079 715 182 25 19 chr3 2944514 2944673 -224579905 + MER33 DNA MER1_type 15 174 -150 239 225 72 45 chr3 2944673 2944784 -224579794 - L1MCb LINE L1 -4904 1141 1028 2280 112 3 0 chr3 2944815 2945127 -224579451 - AluSq SINE Alu 0 313 1 1278 281 89 53 chr3 2945826 2945936 -224578642 + MLT1E3 LTR MaLR 1 106 -518 1599 163 96 39 chr3 2945936 2946291 -224578287 + THE1C LTR MaLR 1 375 0 1278 281 89 53 chr3 2946291 2946778 -224577800 + MLT1E3 LTR MaLR 106 619 -5 32 26 0 0 chr3 2946846 2946885 -224577693 + AT_rich Low_complexity Low_complexity 1 39 0 339 372 51 60 chr3 2947808 2948222 -224576356 - L2 LINE L2 -6 3266 2857 566 236 106 25 chr3 2948279 2948516 -224576062 + MER5C DNA MER1_type 1 256 -68 279 288 254 0 chr3 2949627 2949769 -224574809 + MIR SINE MIR 37 213 -49 334 254 56 16 chr3 2949861 2949987 -224574591 + MER104 DNA Tc2 26 156 -24 2302 113 0 3 chr3 2950163 2950472 -224574106 - AluSg SINE Alu -2 308 1 493 125 48 19 chr3 2950474 2950578 -224574000 - L1PA8 LINE L1 0 6172 6066 2084 142 3 0 chr3 2951792 2952103 -224572475 + AluSx SINE Alu 1 312 0 200 262 98 0 chr3 2952932 2952993 -224571585 + MIR SINE MIR 80 146 -116 8443 125 6 17 chr3 2953734 2955116 -224569462 - L1P LINE L1 -795 5351 3985 554 159 24 56 chr3 2955622 2955732 -224568846 + MER53 DNA DNA 1 108 -81 2322 189 38 6 chr3 2955732 2956228 -224568350 + MER67D LTR ERV1 1 512 -2 554 159 24 56 chr3 2956228 2956243 -224568335 + MER53 DNA DNA 108 122 -67 180 0 0 0 chr3 2956303 2956323 -224568255 + (T)n Simple_repeat Simple_repeat 1 20 0 357 333 50 6 chr3 2956363 2956522 -224568056 + MIR SINE MIR 85 250 -12 2820 13 0 0 chr3 2957379 2957689 -224566889 - AluY SINE Alu -1 310 1 257 265 73 15 chr3 2958055 2958123 -224566455 - MIR SINE MIR -108 100 29 26 50 0 0 chr3 2958138 2958178 -224566400 + AT_rich Low_complexity Low_complexity 1 40 0 1489 303 48 32 chr3 2958310 2958940 -224565638 - MLT2F LTR ERVL -6 657 18 1911 173 0 0 chr3 2958958 2959264 -224565314 + AluJo SINE Alu 2 307 -5 22 56 0 0 chr3 2959375 2959411 -224565167 + AT_rich Low_complexity Low_complexity 1 36 0 530 255 24 34 chr3 2961595 2961803 -224562775 + L1MC/D LINE L1 5614 5819 -1989 21 36 0 0 chr3 2961832 2961860 -224562718 + AT_rich Low_complexity Low_complexity 1 28 0 817 212 19 66 chr3 2962507 2962719 -224561859 - MLT1A2 LTR MaLR 0 374 173 414 0 0 0 chr3 2962744 2962790 -224561788 + (GA)n Simple_repeat Simple_repeat 1 46 0 693 191 79 20 chr3 2962811 2962963 -224561615 - MLT1A2 LTR MaLR -213 161 1 230 318 34 34 chr3 2962993 2963081 -224561497 - MIR SINE MIR -89 119 32 4212 144 30 7 chr3 2963134 2963871 -224560707 + Tigger3b DNA MER2_type 1 754 -477 551 248 83 0 chr3 2963887 2964032 -224560546 - FAM SINE Alu -18 157 1 291 139 18 4 chr3 2964035 2964092 -224560486 - AluJo SINE Alu -166 136 85 4475 148 7 44 chr3 2964115 2964933 -224559645 + L1PA16 LINE L1 5377 6164 -2 36 53 0 0 chr3 2965007 2965064 -224559514 + AT_rich Low_complexity Low_complexity 1 57 0 23 0 0 0 chr3 2965192 2965215 -224559363 + AT_rich Low_complexity Low_complexity 1 23 0 285 314 183 22 chr3 2966345 2966482 -224558096 - MLT1J2 LTR MaLR -38 412 254 357 338 7 28 chr3 2966670 2966812 -224557766 - MIR SINE MIR -116 146 8 25 90 0 0 chr3 2967261 2967328 -224557250 + AT_rich Low_complexity Low_complexity 1 67 0 1561 173 10 17 chr3 2967853 2967866 -224556712 - AluJo SINE Alu -9 303 291 186 43 0 0 chr3 2967866 2967889 -224556689 + (TC)n Simple_repeat Simple_repeat 2 24 0 1561 173 10 17 chr3 2967889 2968170 -224556408 - AluJo SINE Alu -21 291 11 180 246 35 0 chr3 2968315 2968372 -224556206 - MIR SINE MIR -10 252 194 333 335 112 28 chr3 2968395 2968610 -224555968 - MIR SINE MIR 0 262 30 730 252 50 12 chr3 2969295 2969671 -224554907 + MLT1J1 LTR MaLR 1 440 -10 407 244 12 0 chr3 2969728 2969814 -224554764 - MLT1J1 LTR MaLR -120 326 240 2380 69 13 3 chr3 2969894 2970197 -224554381 + AluSg SINE Alu 1 306 -4 2077 121 0 3 chr3 2970246 2970552 -224554026 + AluSx SINE Alu 3 307 0 3010 162 0 6 chr3 2970895 2971384 -224553194 - MER66B LTR ERV1 0 486 1 267 31 0 0 chr3 2971935 2971967 -224552611 + (TG)n Simple_repeat Simple_repeat 1 32 0 1337 274 47 24 chr3 2972192 2972616 -224551962 + MLT1J1 LTR MaLR 2 435 -11 24 0 0 0 chr3 2972646 2972670 -224551908 + AT_rich Low_complexity Low_complexity 1 24 0 260 374 39 39 chr3 2973306 2973662 -224550916 + L2 LINE L2 2364 2719 -595 322 292 63 66 chr3 2973768 2974134 -224550444 - HAL1b LINE L1 -6 2501 750 341 329 0 0 chr3 2974292 2974371 -224550207 + MER91A DNA MER1_type 2 80 -116 328 360 97 23 chr3 2974456 2974756 -224549822 - L2 LINE L2 -1258 2056 1735 1949 192 11 8 chr3 2974931 2975295 -224549283 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr3 2975945 2975967 -224548611 + AT_rich Low_complexity Low_complexity 1 22 0 1992 144 0 0 chr3 2976570 2976861 -224547717 + AluSx SINE Alu 11 301 -11 1436 210 39 3 chr3 2977487 2977773 -224546805 - AluJb SINE Alu -6 296 1 233 278 11 100 chr3 2978756 2978846 -224545732 + MIR SINE MIR 51 132 -130 207 356 7 68 chr3 2978926 2979072 -224545506 + MIR3 SINE MIR 59 195 -13 332 255 20 41 chr3 2979676 2979774 -224544804 + MIR3 SINE MIR 76 171 -37 449 339 27 27 chr3 2979795 2979978 -224544600 - MER5A DNA MER1_type -5 184 2 630 284 74 16 chr3 2980492 2980735 -224543843 + MIR SINE MIR 6 262 0 246 306 194 0 chr3 2981019 2981117 -224543461 - L2 LINE L2 0 3313 3197 342 67 0 0 chr3 2981276 2981321 -224543257 + (T)n Simple_repeat Simple_repeat 1 45 0 391 319 14 35 chr3 2981808 2981952 -224542626 - MER91A DNA MER1_type -54 142 2 295 247 13 13 chr3 2983611 2983688 -224540890 - MLT1I LTR MaLR -4 405 329 453 315 99 9 chr3 2984191 2984413 -224540165 + MIR SINE MIR 6 247 -15 28 0 0 0 chr3 2984988 2985016 -224539562 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr3 2985999 2986019 -224538559 + (A)n Simple_repeat Simple_repeat 1 20 0 967 116 0 0 chr3 2986942 2987071 -224537507 + AluSq SINE Alu 1 129 -183 1960 129 0 36 chr3 2987083 2987392 -224537186 + AluSx SINE Alu 1 298 -14 325 259 19 83 chr3 2987546 2987620 -224536958 + MER102b DNA MER1_type 229 295 -1133 2133 177 50 17 chr3 2987620 2988038 -224536540 - MSTB1 LTR MaLR 0 432 1 325 259 19 83 chr3 2988038 2988071 -224536507 + MER102b DNA MER1_type 295 329 -12 1749 152 0 71 chr3 2988206 2988529 -224536049 - AluJb SINE Alu -12 300 1 256 347 88 7 chr3 2988624 2988771 -224535807 - MIR3 SINE MIR -12 196 38 296 250 29 0 chr3 2988812 2988880 -224535698 + MIR SINE MIR 185 254 -8 208 343 14 0 chr3 2990746 2990816 -224533762 - L2 LINE L2 -2 3270 3200 387 251 106 67 chr3 2991107 2991286 -224533292 + MIR SINE MIR 77 262 0 682 295 70 7 chr3 2992213 2992668 -224531910 + MLT1K LTR MaLR 24 582 -6 21 0 0 0 chr3 2992952 2992973 -224531605 + AT_rich Low_complexity Low_complexity 1 21 0 1034 113 94 6 chr3 2993347 2993507 -224531071 + AluSq SINE Alu 129 302 -11 329 275 25 0 chr3 2993994 2994074 -224530504 + L2 LINE L2 3232 3313 0 237 196 0 0 chr3 2994571 2994627 -224529951 + (ATGGTG)n Simple_repeat Simple_repeat 4 59 0 25 31 0 0 chr3 2995296 2995328 -224529250 + AT_rich Low_complexity Low_complexity 1 32 0 53 30 0 0 chr3 2995707 2995774 -224528804 + AT_rich Low_complexity Low_complexity 1 67 0 39 50 0 0 chr3 2996739 2996799 -224527779 + AT_rich Low_complexity Low_complexity 1 60 0 2219 201 62 67 chr3 2996899 2997482 -224527096 - L1MDa LINE L1 -5935 605 26 2081 105 4 0 chr3 2997561 2997837 -224526741 + AluSq SINE Alu 1 277 -36 31 0 0 0 chr3 2997856 2997887 -224526691 + AT_rich Low_complexity Low_complexity 1 31 0 934 226 5 5 chr3 2998495 2998685 -224525893 + MER58A DNA MER1_type 34 223 -1 8050 12 0 0 chr3 2998996 3000598 -224523980 - L1HS LINE L1 0 6155 4554 453 330 76 21 chr3 3000666 3000957 -224523621 + L2 LINE L2 2159 2465 -849 618 291 180 26 chr3 3000957 3001389 -224523189 - L1MEd LINE L1 -4908 1211 838 1582 110 12 31 chr3 3001389 3001643 -224522935 - AluSq SINE Alu 0 313 65 618 291 180 26 chr3 3001643 3001714 -224522864 - L1MEd LINE L1 -5281 838 779 21 0 0 0 chr3 3001780 3001801 -224522777 + AT_rich Low_complexity Low_complexity 1 21 0 673 223 0 0 chr3 3001846 3001967 -224522611 - FLAM_A SINE Alu -12 121 1 425 306 123 56 chr3 3002039 3002554 -224522024 + L2 LINE L2 2683 3239 -74 647 183 8 16 chr3 3002554 3002680 -224521898 - FLAM_A SINE Alu -4 129 5 425 306 123 56 chr3 3002680 3002748 -224521830 + L2 LINE L2 3239 3301 -12 201 74 0 0 chr3 3003599 3003626 -224520952 + (TA)n Simple_repeat Simple_repeat 2 28 0 1062 139 41 0 chr3 3003626 3003798 -224520780 - AluSg/x SINE Alu 0 312 134 204 350 122 50 chr3 3003837 3004017 -224520561 - MIR SINE MIR -50 212 20 253 282 118 47 chr3 3004388 3004558 -224520020 + MER5A DNA MER1_type 7 188 -1 622 286 104 50 chr3 3006200 3006602 -224517976 + HAL1b LINE L1 344 574 -774 22 35 0 0 chr3 3007169 3007198 -224517380 + AT_rich Low_complexity Low_complexity 1 29 0 479 183 104 24 chr3 3007406 3007570 -224517008 - MER104 DNA MER2_type -3 177 1 318 185 8 100 chr3 3008238 3008368 -224516210 + L1ME4a LINE L1 5966 6083 -38 6700 126 20 53 chr3 3008414 3009686 -224514892 + Tigger3b DNA MER2_type 3 1231 0 302 240 0 94 chr3 3009686 3009782 -224514796 + L1MC4 LINE L1 6617 6703 -1339 243 0 0 0 chr3 3009782 3009809 -224514769 + (TA)n Simple_repeat Simple_repeat 1 27 0 696 183 72 20 chr3 3010340 3010493 -224514085 + MER5A DNA MER1_type 1 161 -28 369 75 0 0 chr3 3010613 3010666 -224513912 + (CA)n Simple_repeat Simple_repeat 2 54 0 312 71 0 0 chr3 3011028 3011070 -224513508 - L1MA10 LINE L1 -10 6324 6283 378 165 13 13 chr3 3011070 3011149 -224513429 + L1MB1 LINE L1 6004 6082 -107 677 159 0 0 chr3 3011213 3011320 -224513258 - AluJb SINE Alu -205 107 1 25 0 0 0 chr3 3011579 3011604 -224512974 + AT_rich Low_complexity Low_complexity 1 25 0 1482 122 215 4 chr3 3011640 3011886 -224512692 + AluSg1 SINE Alu 1 298 -11 549 326 73 55 chr3 3011911 3012294 -224512284 + L2 LINE L2 2919 3308 -5 899 203 115 5 chr3 3012319 3012511 -224512067 - MER58A DNA MER1_type -1 223 11 284 93 0 0 chr3 3012684 3012727 -224511851 - MADE1 DNA Mariner -37 43 1 1279 167 8 16 chr3 3012727 3012984 -224511594 - L1MC3 LINE L1 -24 7761 7507 195 358 20 54 chr3 3013185 3013333 -224511245 + MIR SINE MIR 70 212 -50 925 183 30 35 chr3 3014170 3014372 -224510206 + MER3 DNA MER1_type 9 209 0 448 281 191 20 chr3 3015010 3015209 -224509369 - MIR SINE MIR -6 256 24 528 286 5 77 chr3 3015655 3015919 -224508659 - MIR SINE MIR -8 254 13 195 250 0 0 chr3 3016092 3016132 -224508446 - MIR SINE MIR -73 135 96 438 20 0 0 chr3 3017736 3017787 -224506791 + (CA)n Simple_repeat Simple_repeat 2 52 0 398 309 172 0 chr3 3018565 3018769 -224505809 - MIR SINE MIR -6 256 18 2164 57 4 0 chr3 3019779 3020101 -224504477 - AluY SINE Alu 0 323 1 696 242 55 0 chr3 3020241 3020406 -224504172 + MER5A DNA MER1_type 15 188 -1 2435 52 10 0 chr3 3020635 3020943 -224503635 - AluY SINE Alu 0 311 1 190 265 0 20 chr3 3021404 3021453 -224503125 + L2 LINE L2 3209 3256 -16 323 57 0 22 chr3 3022148 3022201 -224502377 + MLT2A2 LTR ERVL 411 453 0 41160 70 12 5 chr3 3022201 3022669 -224501909 + HERVL-A2 LTR ERVL 1 465 -5189 2027 135 26 3 chr3 3022669 3022973 -224501605 - AluSq SINE Alu -2 311 1 41160 70 12 5 chr3 3022973 3027793 -224496785 + HERVL-A2 LTR ERVL 465 5323 -331 485 224 11 17 chr3 3027950 3028129 -224496449 + (TA)n Simple_repeat Simple_repeat 2 179 0 2688 108 23 8 chr3 3028140 3028538 -224496040 - MLT2A1 LTR ERVL -40 404 1 2640 72 0 0 chr3 3028538 3028883 -224495695 - HERVL-A1 LTR ERVL 0 5654 5310 369 158 0 0 chr3 3028885 3028967 -224495611 + (TA)n Simple_repeat Simple_repeat 2 83 0 239 62 125 21 chr3 3028968 3029016 -224495562 + MLT2A2 LTR ERVL 401 453 0 597 165 0 10 chr3 3029016 3029119 -224495459 - L1 LINE L1 -1174 4972 4871 1845 144 34 42 chr3 3029119 3029529 -224495049 + L1MA4 LINE L1 5894 6300 0 272 297 36 27 chr3 3030730 3030841 -224493737 + MIR SINE MIR 36 147 -61 3542 113 12 0 chr3 3030841 3031343 -224493235 + L1PA7 LINE L1 692 1199 -5262 23900 98 15 8 chr3 3031349 3035727 -224488851 + L1PA7 LINE L1 2067 6469 0 6746 112 8 2 chr3 3035728 3036768 -224487810 + L1PA7 LINE L1 2665 3710 -2751 10649 96 9 1 chr3 3036768 3039086 -224485492 + L1PA7 LINE L1 4130 6456 -13 214 267 120 13 chr3 3039391 3039466 -224485112 - MER5A DNA MER1_type -73 116 34 528 312 12 18 chr3 3040477 3040647 -224483931 + MIR SINE MIR 29 197 -65 297 356 0 0 chr3 3040800 3040887 -224483691 + L2 LINE L2 3227 3313 0 2002 117 3 36 chr3 3040907 3041216 -224483362 + AluSx SINE Alu 1 299 -13 395 303 30 30 chr3 3041413 3041578 -224483000 - MIR SINE MIR -89 173 9 3264 247 74 44 chr3 3042022 3042378 -224482200 - L1MC4 LINE L1 -327 7715 7371 1228 202 132 0 chr3 3042378 3042636 -224481942 + AluJo SINE Alu 4 295 -7 3264 247 74 44 chr3 3042636 3043500 -224481078 - L1MC4 LINE L1 -671 7371 6459 2602 125 0 0 chr3 3045933 3046308 -224478270 + THE1C LTR MaLR 1 375 0 27 0 0 0 chr3 3046609 3046636 -224477942 + AT_rich Low_complexity Low_complexity 1 27 0 225 368 123 0 chr3 3046656 3046770 -224477808 + L2 LINE L2 3137 3264 -8 280 230 27 0 chr3 3046939 3047013 -224477565 - MIR SINE MIR -3 259 184 367 225 0 0 chr3 3047268 3047339 -224477239 + MIR SINE MIR 77 147 -115 184 320 26 26 chr3 3047791 3047869 -224476709 + MIR SINE MIR 159 236 -26 1708 191 0 3 chr3 3048668 3048972 -224475606 + AluJo SINE Alu 1 303 -9 418 51 0 17 chr3 3049168 3049227 -224475351 + (TG)n Simple_repeat Simple_repeat 2 59 0 317 348 62 12 chr3 3049487 3049648 -224474930 + L1MEc LINE L1 426 594 -6013 1640 180 23 3 chr3 3049680 3049980 -224474598 + AluJb SINE Alu 1 306 -6 492 276 120 31 chr3 3050119 3050659 -224473919 + L1MEc LINE L1 1107 1694 -4732 728 211 65 60 chr3 3050725 3050862 -224473716 - MER58A DNA MER1_type -2198 222 82 1102 209 73 48 chr3 3050862 3051216 -224473362 - MLT1A1 LTR MaLR -2 363 1 728 211 65 60 chr3 3051216 3051263 -224473315 - MER58A DNA MER1_type -2338 82 37 399 315 51 30 chr3 3051288 3051523 -224473055 + L1MEc LINE L1 2091 2330 -4277 453 229 46 106 chr3 3051575 3051877 -224472701 - MLT1H LTR MaLR -38 511 228 30 27 0 0 chr3 3051934 3051971 -224472607 + AT_rich Low_complexity Low_complexity 1 37 0 467 221 116 53 chr3 3052016 3052319 -224472259 + L1MEc LINE L1 1304 1625 -4801 1163 158 51 111 chr3 3052476 3052833 -224471745 - MER21A LTR ERV1 -498 365 1 355 293 33 14 chr3 3052897 3053088 -224471490 + L1MEc LINE L1 3534 3729 -2697 464 356 25 22 chr3 3053123 3053440 -224471138 + L1MEc LINE L1 3887 4204 -2222 387 297 10 35 chr3 3053573 3053775 -224470803 + L1MEc LINE L1 4307 4503 -1923 303 121 11 17 chr3 3053781 3053849 -224470729 + L1MA7 LINE L1 6038 6104 -187 2904 147 36 8 chr3 3053849 3054352 -224470226 - Tigger3(Golem) DNA MER2_type 0 3029 2513 2036 207 22 12 chr3 3054358 3054764 -224469814 - MER47B DNA MER2_type -8 410 1 462 261 48 35 chr3 3054769 3055079 -224469499 + L1M4 LINE L1 3030 3343 -2803 539 276 0 6 chr3 3055093 3055249 -224469329 + L1ME3 LINE L1 6003 6157 -5 361 317 0 19 chr3 3056232 3056336 -224468242 - L2 LINE L2 -17 3255 3154 678 314 105 32 chr3 3057501 3057976 -224466602 - L2 LINE L2 0 3313 2804 613 179 0 8 chr3 3058015 3058132 -224466446 + Tigger2a DNA MER2_type 2 117 -317 7235 40 0 0 chr3 3058158 3059123 -224465455 - L1PA5 LINE L1 -2 6152 5175 1208 118 0 0 chr3 3059126 3059296 -224465282 - AluY SINE Alu -10 301 132 2102 138 21 0 chr3 3059338 3059663 -224464915 + Tigger2a DNA MER2_type 103 434 0 847 308 83 11 chr3 3059776 3060319 -224464259 - MLT2F LTR ERVL 0 663 1 744 296 9 5 chr3 3061284 3061500 -224463078 - MIR SINE MIR 0 262 46 791 233 91 25 chr3 3061779 3062286 -224462292 + MLT1G1 LTR MaLR 1 589 -1 535 288 23 28 chr3 3064047 3064224 -224460354 - MIR SINE MIR -8 254 79 491 218 73 8 chr3 3064229 3064353 -224460225 + MER39 LTR ERV1 1 132 -575 220 302 94 10 chr3 3065700 3065796 -224458782 - L2 LINE L2 -4 3309 3206 23 0 0 0 chr3 3066488 3066511 -224458067 + AT_rich Low_complexity Low_complexity 1 23 0 2029 106 0 0 chr3 3067227 3067491 -224457087 - AluY SINE Alu -16 295 32 260 174 0 0 chr3 3069636 3069682 -224454896 - L2 LINE L2 -4 3268 3223 811 212 0 32 chr3 3071013 3071130 -224453448 + MER3 DNA MER1_type 26 136 -73 1564 161 94 25 chr3 3071130 3071416 -224453162 - AluJb SINE Alu -6 306 1 811 212 0 32 chr3 3071416 3071487 -224453091 + MER3 DNA MER1_type 136 208 -1 277 277 0 0 chr3 3071434 3071499 -224453079 - MER3 DNA MER1_type -108 101 37 * 21 0 0 0 chr3 3071580 3071601 -224452977 + AT_rich Low_complexity Low_complexity 1 21 0 379 296 51 23 chr3 3071681 3071857 -224452721 - MIR SINE MIR -65 197 17 190 205 26 0 chr3 3071863 3071902 -224452676 - L2 LINE L2 -12 3260 3221 343 214 48 68 chr3 3072322 3072380 -224452198 + MER5A DNA MER1_type 12 69 -120 312 27 0 0 chr3 3072380 3072417 -224452161 + (CA)n Simple_repeat Simple_repeat 2 38 0 343 214 48 68 chr3 3072417 3072461 -224452117 + MER5A DNA MER1_type 69 112 -77 507 318 74 56 chr3 3072553 3073091 -224451487 + L1MEd LINE L1 266 813 -5306 24 53 0 0 chr3 3073092 3073130 -224451448 + AT_rich Low_complexity Low_complexity 1 38 0 3719 196 38 6 chr3 3073264 3073952 -224450626 + L1MA4 LINE L1 10 719 -4609 539 202 25 10 chr3 3073954 3074218 -224450360 + GA-rich Low_complexity Low_complexity 1 267 0 2665 143 56 78 chr3 3074219 3074592 -224449986 + L1MA4 LINE L1 680 1060 -4427 1622 196 0 19 chr3 3074592 3074909 -224449669 + AluJb SINE Alu 1 311 -1 2665 143 56 78 chr3 3074909 3075038 -224449540 + L1MA4 LINE L1 1060 1190 -4297 1728 176 4 4 chr3 3075038 3075317 -224449261 + AluJb SINE Alu 1 279 -33 225 0 48 48 chr3 3075318 3075360 -224449218 + (CAAA)n Simple_repeat Simple_repeat 2 43 0 2665 143 56 78 chr3 3075360 3075614 -224448964 + L1MA4 LINE L1 1189 1422 -4065 * 3955 171 24 13 chr3 3075600 3076440 -224448138 + L1MA4 LINE L1 3779 4627 -1701 7882 180 21 28 chr3 3076442 3078110 -224446468 + L1PA10 LINE L1 920 2575 -3571 9000 119 10 10 chr3 3078118 3080357 -224444221 + L1PA10 LINE L1 3942 6168 0 2098 121 0 0 chr3 3080365 3080666 -224443912 + AluSg SINE Alu 1 301 0 1716 162 22 22 chr3 3080668 3081038 -224443540 + L1MA4 LINE L1 4604 4973 -1355 657 151 0 0 chr3 3081063 3081182 -224443396 + GA-rich Low_complexity Low_complexity 4 122 0 5486 176 22 9 chr3 3081182 3082682 -224441896 + L1MA4 LINE L1 4967 6482 0 809 284 103 36 chr3 3082693 3083817 -224440761 + L1ME LINE L1 4487 5684 -486 1817 173 7 0 chr3 3084518 3084818 -224439760 + AluJb SINE Alu 1 302 -10 273 128 0 0 chr3 3085107 3085154 -224439424 + (GGAA)n Simple_repeat Simple_repeat 1 47 0 2435 52 10 0 chr3 3087425 3087733 -224436845 + AluY SINE Alu 1 311 0 696 242 55 0 chr3 3087962 3088127 -224436451 - MER5A DNA MER1_type -1 188 15 2165 57 4 0 chr3 3088267 3088589 -224435989 + AluY SINE Alu 1 323 0 398 309 172 0 chr3 3089599 3089803 -224434775 + MIR SINE MIR 18 256 -6 438 20 0 0 chr3 3090581 3090632 -224433946 + (TG)n Simple_repeat Simple_repeat 2 52 0 195 250 0 0 chr3 3092236 3092276 -224432302 + MIR SINE MIR 96 135 -73 528 286 5 77 chr3 3092449 3092713 -224431865 + MIR SINE MIR 13 254 -8 448 281 191 20 chr3 3093159 3093358 -224431220 + MIR SINE MIR 24 256 -6 925 183 30 35 chr3 3093996 3094198 -224430380 - MER3 DNA MER1_type 0 209 9 195 358 20 54 chr3 3095035 3095183 -224429395 - MIR SINE MIR -50 212 70 1279 167 8 16 chr3 3095384 3095641 -224428937 + L1MC3 LINE L1 7507 7761 -24 284 93 0 0 chr3 3095641 3095684 -224428894 + MADE1 DNA Mariner 1 43 -37 899 203 115 5 chr3 3095857 3096049 -224428529 + MER58A DNA MER1_type 11 223 -1 549 326 73 55 chr3 3096074 3096457 -224428121 - L2 LINE L2 -5 3308 2919 1482 122 215 4 chr3 3096482 3096728 -224427850 - AluSg1 SINE Alu -11 298 1 25 0 0 0 chr3 3096764 3096789 -224427789 + AT_rich Low_complexity Low_complexity 1 25 0 677 159 0 0 chr3 3097048 3097155 -224427423 + AluJb SINE Alu 1 107 -205 392 161 12 12 chr3 3097219 3097300 -224427278 - L1MB1 LINE L1 -107 6082 6002 312 71 0 0 chr3 3097300 3097340 -224427238 + L1MA10 LINE L1 6283 6324 -10 369 75 0 0 chr3 3097702 3097755 -224426823 + (TG)n Simple_repeat Simple_repeat 2 54 0 696 183 72 20 chr3 3097875 3098028 -224426550 - MER5A DNA MER1_type -28 161 1 243 0 0 0 chr3 3098559 3098586 -224425992 + (TA)n Simple_repeat Simple_repeat 2 28 0 302 240 0 94 chr3 3098586 3098682 -224425896 - L1MC4 LINE L1 -1339 6703 6617 6700 126 20 53 chr3 3098682 3099954 -224424624 - Tigger3b DNA MER2_type 0 1231 3 318 185 8 100 chr3 3100000 3100130 -224424448 - L1ME4a LINE L1 -38 6083 5966 479 183 104 24 chr3 3100798 3100962 -224423616 + MER104 DNA MER2_type 1 177 -3 22 35 0 0 chr3 3101170 3101199 -224423379 + AT_rich Low_complexity Low_complexity 1 29 0 622 286 104 50 chr3 3101766 3102168 -224422410 - HAL1b LINE L1 -774 574 344 253 282 118 47 chr3 3103810 3103980 -224420598 - MER5A DNA MER1_type -1 188 7 204 350 122 50 chr3 3104351 3104531 -224420047 + MIR SINE MIR 20 212 -50 1062 139 41 0 chr3 3104570 3104742 -224419836 + AluSg/x SINE Alu 134 312 0 201 74 0 0 chr3 3104742 3104769 -224419809 + (TA)n Simple_repeat Simple_repeat 2 28 0 398 305 123 57 chr3 3105622 3105690 -224418888 - L2 LINE L2 -12 3301 3239 647 183 8 16 chr3 3105690 3105816 -224418762 + FLAM_A SINE Alu 5 129 -4 398 305 123 57 chr3 3105816 3106332 -224418246 - L2 LINE L2 -74 3239 2683 673 223 0 0 chr3 3106404 3106525 -224418053 + FLAM_A SINE Alu 1 121 -12 21 0 0 0 chr3 3106570 3106591 -224417987 + AT_rich Low_complexity Low_complexity 1 21 0 618 291 180 26 chr3 3106657 3106728 -224417850 + L1MEd LINE L1 779 838 -5281 1582 110 12 31 chr3 3106728 3106982 -224417596 + AluSq SINE Alu 65 313 0 618 291 180 26 chr3 3106982 3107414 -224417164 + L1MEd LINE L1 838 1211 -4908 453 330 76 21 chr3 3107414 3107705 -224416873 - L2 LINE L2 -849 2465 2159 8009 13 0 0 chr3 3107773 3109375 -224415203 + L1HS LINE L1 4554 6155 0 896 230 5 5 chr3 3109688 3109875 -224414703 - MER58A DNA MER1_type -4 220 34 6991 51 11 7 chr3 3109923 3110883 -224413695 + L1PA6 LINE L1 5184 6147 -7 237 139 0 0 chr3 3111006 3111049 -224413529 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr3 3111302 3111323 -224413255 + AT_rich Low_complexity Low_complexity 1 21 0 225 296 21 63 chr3 3111646 3111788 -224412790 + L3b LINE CR1 1317 1452 -131 228 67 0 0 chr3 3112027 3112057 -224412521 + (TCCA)n Simple_repeat Simple_repeat 4 33 0 382 305 241 12 chr3 3112057 3112306 -224412272 - L2 LINE L2 -2 3311 3006 322 286 32 84 chr3 3113448 3113602 -224410976 - MIR3 SINE MIR -27 181 36 357 233 0 29 chr3 3115593 3115696 -224408882 + LTR67 LTR ERVL 452 551 -6 776 329 80 6 chr3 3117648 3118010 -224406568 - LTR16C LTR ERVL -7 484 96 206 291 0 0 chr3 3120030 3120085 -224404493 - L2 LINE L2 -15 3298 3244 228 226 19 0 chr3 3120396 3120449 -224404129 - L2 LINE L2 -2 3270 3217 497 292 49 15 chr3 3120486 3120753 -224403825 + L1MC5 LINE L1 7474 7749 -212 26 0 0 0 chr3 3120757 3120783 -224403795 + AT_rich Low_complexity Low_complexity 1 26 0 564 56 0 0 chr3 3122087 3122159 -224402419 + (TTCC)n Simple_repeat Simple_repeat 4 75 0 220 304 43 0 chr3 3122383 3122452 -224402126 + L2 LINE L2 3201 3272 0 270 306 41 10 chr3 3123672 3123770 -224400808 - MLT1L LTR MaLR -350 265 165 267 167 139 0 chr3 3125582 3125654 -224398924 + MIR SINE MIR 178 259 -3 425 355 84 12 chr3 3126055 3126543 -224398035 - L1MC4a LINE L1 -1978 5830 5308 316 288 62 0 chr3 3126723 3126883 -224397695 - L1MC4a LINE L1 -1087 5059 4890 498 114 0 0 chr3 3127676 3127746 -224396832 + AluJ/FRAM SINE Alu 226 295 -17 364 235 163 60 chr3 3128180 3128346 -224396232 + MER20 DNA MER1_type 10 192 -27 1995 154 3 0 chr3 3128616 3128927 -224395651 - AluSx SINE Alu 0 312 1 316 257 81 0 chr3 3130115 3130189 -224394389 + L2 LINE L2 3233 3312 -1 311 304 61 9 chr3 3130251 3130366 -224394212 + MIR3 SINE MIR 34 154 -54 4163 114 35 31 chr3 3130658 3130980 -224393598 - L1MA2 LINE L1 0 6304 5985 2090 125 26 0 chr3 3130980 3131284 -224393294 - AluSp SINE Alu -1 312 1 4163 114 35 31 chr3 3131284 3131681 -224392897 - L1MA2 LINE L1 -319 5985 5582 1608 205 14 7 chr3 3131681 3131969 -224392609 - LTR10B LTR ERV1 0 547 258 10369 244 19 32 chr3 3132044 3135286 -224389292 - LTR10B-int LTR ERV1 0 7769 4185 1049 249 89 4 chr3 3135282 3135551 -224389027 - LTR10B-int LTR ERV1 -6353 296 5 * 1753 168 14 0 chr3 3135551 3135837 -224388741 - LTR10B LTR ERV1 0 547 258 1973 158 24 3 chr3 3135912 3136418 -224388160 - L1M1 LINE L1 -720 5585 5072 1197 147 96 97 chr3 3136685 3137043 -224387535 - MER4A LTR ERV1 0 664 261 379 110 132 55 chr3 3137043 3137134 -224387444 - MER4A LTR ERV1 -566 98 1 2101 122 0 4 chr3 3137318 3137597 -224386981 + AluSx SINE Alu 5 282 -30 317 309 0 73 chr3 3137626 3137762 -224386816 - L2 LINE L2 -21 3292 3167 974 241 106 20 chr3 3137872 3138175 -224386403 + MLT2D LTR ERVL 78 406 -8 210 306 178 22 chr3 3138205 3138385 -224386193 - L2 LINE L2 -217 3096 2889 1669 138 160 9 chr3 3138425 3138743 -224385835 + MSTA LTR MaLR 63 428 0 441 229 10 0 chr3 3140314 3140410 -224384168 - MER5A DNA MER1_type -83 106 10 1253 295 45 14 chr3 3140732 3141173 -224383405 + L1ME LINE L1 27 481 -5589 1792 241 97 11 chr3 3141238 3141876 -224382702 + L1M4 LINE L1 4475 5167 -979 2854 204 60 48 chr3 3141941 3142823 -224381755 + L1MC4 LINE L1 6936 7828 -214 21 36 0 0 chr3 3142907 3142935 -224381643 + AT_rich Low_complexity Low_complexity 1 28 0 727 131 37 0 chr3 3143158 3143265 -224381313 + MER4B LTR ERV1 500 610 0 2360 71 3 0 chr3 3143912 3144220 -224380358 - AluY SINE Alu -2 309 1 2120 113 0 26 chr3 3144659 3144968 -224379610 + AluSx SINE Alu 1 301 -11 246 32 0 0 chr3 3145773 3145804 -224378774 + (TG)n Simple_repeat Simple_repeat 1 31 0 884 213 0 24 chr3 3245920 3246089 -224278489 - FAM SINE Alu -10 165 1 499 275 76 28 chr3 3246358 3246569 -224278009 - MLT1J2 LTR MaLR -171 279 59 190 213 85 0 chr3 3246595 3246642 -224277936 - MIR SINE MIR -101 161 111 471 297 60 78 chr3 3246923 3247206 -224277372 + MLT1I LTR MaLR 132 409 0 234 292 66 29 chr3 3247333 3247470 -224277108 + L1MC/D LINE L1 5762 5903 -1905 411 273 12 61 chr3 3247556 3247721 -224276857 + L2 LINE L2 2558 2714 -600 2326 140 75 10 chr3 3248167 3248567 -224276011 - MSTA LTR MaLR 0 428 3 22 0 0 0 chr3 3248849 3248871 -224275707 + AT_rich Low_complexity Low_complexity 1 22 0 1859 176 7 10 chr3 3249155 3249461 -224275117 - AluJo SINE Alu -7 305 1 1977 168 40 6 chr3 3249506 3249858 -224274720 - THE1B LTR MaLR 0 364 1 420 342 51 6 chr3 3249907 3250065 -224274513 - MER5B DNA MER1_type -6 172 8 445 304 112 6 chr3 3250338 3250499 -224274079 - MIR3 SINE MIR -15 193 16 25 31 0 0 chr3 3252102 3252134 -224272444 + AT_rich Low_complexity Low_complexity 1 32 0 651 275 94 17 chr3 3252496 3252783 -224271795 - L1ME3A LINE L1 -341 5829 5521 2168 112 0 7 chr3 3252787 3253091 -224271487 + AluY SINE Alu 1 302 -9 4676 76 8 2 chr3 3253103 3253735 -224270843 + L1PA14 LINE L1 5526 6161 0 254 103 103 17 chr3 3254907 3254965 -224269613 - L1ME4a LINE L1 -18 6103 6041 214 326 116 14 chr3 3255032 3255170 -224269408 - L2 LINE L2 -4 3309 3158 222 351 15 37 chr3 3255182 3255316 -224269262 - L2 LINE L2 -263 3050 2920 946 202 0 22 chr3 3255559 3255737 -224268841 + FAM SINE Alu 1 174 -1 21 0 0 0 chr3 3256823 3256844 -224267734 + AT_rich Low_complexity Low_complexity 1 21 0 466 272 72 31 chr3 3257765 3257960 -224266618 + MIR SINE MIR 59 261 -1 3676 197 37 26 chr3 3258556 3259711 -224264867 + L1MB7 LINE L1 4959 6127 -57 301 175 0 0 chr3 3259747 3259810 -224264768 + L1MB7 LINE L1 6112 6174 -10 2260 60 46 0 chr3 3260198 3260481 -224264097 + AluSg SINE Alu 1 296 -14 22 0 0 0 chr3 3260711 3260733 -224263845 + AT_rich Low_complexity Low_complexity 1 22 0 28 71 0 0 chr3 3260850 3260906 -224263672 + AT_rich Low_complexity Low_complexity 1 56 0 221 269 216 15 chr3 3261057 3261191 -224263387 - MIR SINE MIR -28 234 74 2349 64 7 10 chr3 3261347 3261645 -224262933 + AluSq SINE Alu 1 297 -16 314 379 0 0 chr3 3261778 3261881 -224262697 - L3 LINE CR1 -40 1537 1435 213 205 0 0 chr3 3261886 3261925 -224262653 + (ATG)n Simple_repeat Simple_repeat 1 39 0 579 275 71 6 chr3 3261964 3262146 -224262432 - MIR SINE MIR -63 199 6 474 161 44 21 chr3 3262166 3262396 -224262182 + CT-rich Low_complexity Low_complexity 1 235 0 296 305 34 17 chr3 3262630 3262748 -224261830 + MIR SINE MIR 142 261 -1 294 29 0 0 chr3 3263313 3263348 -224261230 + (TG)n Simple_repeat Simple_repeat 2 36 0 203 79 0 79 chr3 3263795 3263833 -224260745 + (TTTTTA)n Simple_repeat Simple_repeat 1 35 0 246 226 85 104 chr3 3263934 3264007 -224260571 + L2 LINE L2 3210 3282 -31 1652 207 81 29 chr3 3264007 3264451 -224260127 - MLT1C LTR MaLR 0 467 1 246 226 85 104 chr3 3264451 3264483 -224260095 + L2 LINE L2 3282 3313 0 1428 216 71 31 chr3 3266513 3266962 -224257616 - MLT1C LTR MaLR 0 467 1 1036 200 16 5 chr3 3267244 3267434 -224257144 + AluJb SINE Alu 89 280 -32 270 0 0 0 chr3 3267442 3267472 -224257106 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 342 0 0 0 chr3 3267471 3267509 -224257069 + (GA)n Simple_repeat Simple_repeat 2 39 0 419 242 167 0 chr3 3267579 3267699 -224256879 - MLT1H LTR MaLR -5 544 405 312 310 44 0 chr3 3268123 3268236 -224256342 + L2 LINE L2 3154 3271 -1 420 269 88 18 chr3 3268524 3268695 -224255883 + Charlie8 DNA MER1_type 85 267 -2150 206 209 90 45 chr3 3268942 3269009 -224255569 + MIR SINE MIR 105 174 -88 1665 171 32 20 chr3 3269149 3269247 -224255331 + L1MB7 LINE L1 5822 5917 -267 2471 105 19 8 chr3 3269247 3269618 -224254960 + THE1C LTR MaLR 1 375 0 1665 171 32 20 chr3 3269618 3269863 -224254715 + L1MB7 LINE L1 5917 6169 -15 3666 119 60 28 chr3 3269909 3270523 -224254055 + MER51A LTR ERV1 1 634 0 2114 183 47 10 chr3 3270542 3270947 -224253631 - MSTB LTR MaLR -6 420 1 2121 123 0 13 chr3 3271047 3271348 -224253230 - AluSg SINE Alu -13 297 1 229 380 71 5 chr3 3272311 3272495 -224252083 - L2 LINE L2 0 3313 3118 21 0 0 0 chr3 3273150 3273171 -224251407 + AT_rich Low_complexity Low_complexity 1 21 0 306 323 60 26 chr3 3273244 3273742 -224250836 - L1M4c LINE L1 -868 1875 1400 814 231 177 3 chr3 3273888 3274182 -224250396 - MLT1I LTR MaLR 0 409 65 2292 95 10 3 chr3 3274182 3274486 -224250092 - AluSq SINE Alu -7 306 1 457 343 122 34 chr3 3274631 3275098 -224249480 - L3 LINE CR1 -13 1564 1057 292 231 107 39 chr3 3275753 3276009 -224248569 + L1ME4a LINE L1 5536 5901 -220 2267 83 3 0 chr3 3278121 3278470 -224246108 - AluYb8 SINE Alu 0 350 1 189 0 0 0 chr3 3278640 3278661 -224245917 + (T)n Simple_repeat Simple_repeat 1 21 0 206 349 0 64 chr3 3278839 3278948 -224245630 + L2 LINE L2 2998 3099 -173 1967 138 14 0 chr3 3282297 3282580 -224241998 - AluSx SINE Alu -25 287 1 466 303 141 29 chr3 3283744 3284021 -224240557 - L2 LINE L2 -3 3310 3003 2160 98 3 3 chr3 3286122 3286409 -224238169 + AluSg SINE Alu 1 287 -23 2535 52 3 3 chr3 3287014 3287320 -224237258 + AluY SINE Alu 1 306 -5 1678 103 157 4 chr3 3287563 3287825 -224236753 + AluSq SINE Alu 2 303 0 2370 80 0 0 chr3 3288583 3288901 -224235677 - AluY SINE Alu 0 318 1 24 0 0 0 chr3 3289605 3289629 -224234949 + AT_rich Low_complexity Low_complexity 1 24 0 244 325 0 24 chr3 3291555 3291638 -224232940 + L3b LINE CR1 1250 1330 -253 239 304 173 52 chr3 3291665 3291856 -224232722 + MIR SINE MIR 1 214 -48 204 318 85 64 chr3 3291868 3292088 -224232490 + MIR SINE MIR 17 256 -6 315 333 21 21 chr3 3292797 3293034 -224231544 + HAL1 LINE L1 1424 1660 -847 2309 107 0 0 chr3 3293242 3293551 -224231027 + AluSq SINE Alu 1 309 -4 3757 154 20 70 chr3 3293569 3294434 -224230144 - L1MA9 LINE L1 0 6312 5492 446 80 0 93 chr3 3294436 3294511 -224230067 + L1MA9 LINE L1 5408 5475 -837 272 305 78 43 chr3 3294562 3294703 -224229875 - MER5B DNA MER1_type -28 150 5 21 36 0 0 chr3 3294721 3294749 -224229829 + AT_rich Low_complexity Low_complexity 1 28 0 385 178 100 0 chr3 3295165 3295255 -224229323 + L1MA9 LINE L1 6170 6268 -44 28 0 0 0 chr3 3295259 3295287 -224229291 + AT_rich Low_complexity Low_complexity 1 28 0 1178 206 95 27 chr3 3296077 3296339 -224228239 + AluJo SINE Alu 3 282 -30 857 327 107 52 chr3 3296345 3297615 -224226963 + L1M4 LINE L1 2652 3850 -2296 2272 39 32 0 chr3 3297615 3297898 -224226680 - AluY SINE Alu -19 292 1 857 327 107 52 chr3 3297898 3298239 -224226339 + L1M4 LINE L1 3850 4171 -1975 2492 55 0 0 chr3 3298239 3298547 -224226031 + AluY SINE Alu 1 308 -3 857 327 107 52 chr3 3298547 3298799 -224225779 + L1M4 LINE L1 4171 4619 -1527 249 248 50 40 chr3 3299322 3299423 -224225155 + L1M4 LINE L1 5675 5776 -408 605 203 144 20 chr3 3300099 3300252 -224224326 + MER5A DNA MER1_type 18 189 0 2884 88 2 0 chr3 3300363 3300759 -224223819 + L1PB2 LINE L1 5754 6150 -1 354 348 66 31 chr3 3300846 3301165 -224223413 - L2 LINE L2 -555 2759 2430 371 227 109 31 chr3 3301855 3301983 -224222595 + MIR SINE MIR 52 189 -73 23 0 0 0 chr3 3302043 3302066 -224222512 + AT_rich Low_complexity Low_complexity 1 23 0 1660 189 7 3 chr3 3302516 3302818 -224221760 - MLT1A1 LTR MaLR 0 365 63 2042 169 91 0 chr3 3302871 3303244 -224221334 - MSTA LTR MaLR -21 407 1 348 267 12 0 chr3 3303244 3303310 -224221268 - MLT1A1 LTR MaLR -305 69 3 332 299 28 28 chr3 3304235 3304379 -224220199 - L3 LINE CR1 -172 1405 1262 245 246 98 0 chr3 3304711 3304833 -224219745 - MER113 DNA MER1_type? -387 134 1 408 20 0 0 chr3 3305845 3305894 -224218684 + (TG)n Simple_repeat Simple_repeat 2 50 0 1292 161 0 5 chr3 3305895 3306112 -224218466 - MLT2C2 LTR ERVL -248 216 1 204 294 109 22 chr3 3306847 3306939 -224217639 + MIR SINE MIR 31 130 -78 1043 219 88 3 chr3 3307975 3308272 -224216306 - MER33 DNA MER1_type -1 323 2 286 269 157 60 chr3 3308442 3308658 -224215920 - MIR SINE MIR -6 256 20 196 308 117 25 chr3 3309673 3309793 -224214785 - MIR3 SINE MIR -74 134 4 224 100 25 0 chr3 3310467 3310507 -224214071 + (CA)n Simple_repeat Simple_repeat 2 42 0 283 239 30 0 chr3 3311263 3311330 -224213248 + L2 LINE L2 2481 2549 -765 448 169 48 32 chr3 3311330 3311454 -224213124 + LTR37A LTR ERV1 301 426 0 1745 158 3 52 chr3 3312172 3312482 -224212096 - AluJb SINE Alu -12 300 6 1087 237 71 40 chr3 3312745 3313099 -224211479 + MLT1A1 LTR MaLR 1 365 0 7448 36 7 1 chr3 3314135 3315623 -224208955 - L1PA5 LINE L1 -4 6150 4659 195 69 0 0 chr3 3318504 3318533 -224206045 + (TG)n Simple_repeat Simple_repeat 2 30 0 386 125 0 14 chr3 3319007 3319079 -224205499 + (CA)n Simple_repeat Simple_repeat 1 71 0 787 121 0 57 chr3 3319292 3319433 -224205145 - FLAM_A SINE Alu 0 133 1 207 235 0 0 chr3 3319891 3319942 -224204636 + (TA)n Simple_repeat Simple_repeat 1 51 0 5828 35 4 0 chr3 3319942 3320647 -224203931 - L1PA5 LINE L1 -11 6143 5436 1755 32 0 0 chr3 3320647 3320866 -224203712 + L1P LINE L1 5152 5370 -776 21 0 0 0 chr3 3321019 3321040 -224203538 + AT_rich Low_complexity Low_complexity 1 21 0 456 285 37 49 chr3 3321593 3321839 -224202739 + L1MC4 LINE L1 7549 7779 -216 401 208 0 26 chr3 3321839 3321916 -224202662 + MER7A DNA MER2_type 2 76 -272 * 1860 156 23 7 chr3 3321913 3322220 -224202358 + MER7A DNA MER2_type 36 345 -1 358 188 115 79 chr3 3322238 3322382 -224202196 + L1MC4 LINE L1 7780 7932 -110 1816 173 10 0 chr3 3322382 3322683 -224201895 + AluJb SINE Alu 1 304 -8 358 188 115 79 chr3 3322683 3322703 -224201875 + L1MC4 LINE L1 7932 7950 -92 2126 202 49 14 chr3 3322717 3323163 -224201415 + MLT1C LTR MaLR 1 462 -5 2814 167 6 28 chr3 3323178 3323717 -224200861 - L1MA7 LINE L1 -200 6091 5565 200 191 0 24 chr3 3324698 3324740 -224199838 - L2 LINE L2 -8 3305 3265 2294 96 3 10 chr3 3324963 3325277 -224199301 + AluSp SINE Alu 1 312 -1 351 318 59 42 chr3 3325620 3325859 -224198719 - MIR SINE MIR -13 249 7 1963 127 3 42 chr3 3325936 3326243 -224198335 + AluSx SINE Alu 3 297 -15 22 0 0 0 chr3 3326832 3326854 -224197724 + AT_rich Low_complexity Low_complexity 1 22 0 195 69 0 0 chr3 3327527 3327556 -224197022 + (TG)n Simple_repeat Simple_repeat 1 29 0 26 0 0 0 chr3 3327626 3327652 -224196926 + AT_rich Low_complexity Low_complexity 1 26 0 674 318 173 41 chr3 3327772 3328499 -224196079 - L2 LINE L2 -5 3308 2462 290 244 47 71 chr3 3328504 3328574 -224196004 + MIR SINE MIR 85 152 -110 865 191 30 78 chr3 3328574 3328804 -224195774 + MER20 DNA MER1_type 1 219 0 290 244 47 71 chr3 3328804 3328860 -224195718 + MIR SINE MIR 152 208 -54 25 0 0 0 chr3 3329946 3329971 -224194607 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr3 3330160 3330184 -224194394 + AT_rich Low_complexity Low_complexity 1 24 0 350 280 65 11 chr3 3330548 3330641 -224193937 + MIR SINE MIR 30 127 -81 305 389 0 16 chr3 3330826 3330952 -224193626 - MIR3 SINE MIR -51 157 34 1943 127 7 39 chr3 3331026 3331334 -224193244 - AluSx SINE Alu -14 298 1 21 0 0 0 chr3 3331342 3331363 -224193215 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr3 3333148 3333185 -224191393 + AT_rich Low_complexity Low_complexity 1 37 0 32 67 0 0 chr3 3333416 3333476 -224191102 + AT_rich Low_complexity Low_complexity 1 60 0 236 127 16 48 chr3 3333531 3333594 -224190984 + (TATAA)n Simple_repeat Simple_repeat 1 61 0 246 347 116 0 chr3 3333753 3333848 -224190730 + L2 LINE L2 3146 3251 -21 6446 134 54 14 chr3 3335025 3336139 -224188439 + Tigger1 DNA MER2_type 1 1158 -1260 6308 150 17 18 chr3 3336141 3337260 -224187318 + Tigger1 DNA MER2_type 1301 2418 0 283 214 14 14 chr3 3337260 3337330 -224187248 - MLT1J2 LTR MaLR -5 445 376 557 266 77 27 chr3 3337361 3337583 -224186995 - MLT1J2 LTR MaLR -159 291 59 190 213 85 0 chr3 3337609 3337656 -224186922 - MIR SINE MIR -101 161 111 471 297 60 78 chr3 3337937 3338220 -224186358 + MLT1I LTR MaLR 132 409 0 234 292 66 29 chr3 3338347 3338484 -224186094 + L1MC/D LINE L1 5762 5903 -1905 411 273 12 61 chr3 3338570 3338735 -224185843 + L2 LINE L2 2558 2714 -600 2326 140 75 10 chr3 3339181 3339581 -224184997 - MSTA LTR MaLR 0 428 3 22 0 0 0 chr3 3339863 3339885 -224184693 + AT_rich Low_complexity Low_complexity 1 22 0 1859 176 7 10 chr3 3340169 3340475 -224184103 - AluJo SINE Alu -7 305 1 1977 168 40 6 chr3 3340520 3340872 -224183706 - THE1B LTR MaLR 0 364 1 420 342 51 6 chr3 3340921 3341079 -224183499 - MER5B DNA MER1_type -6 172 8 445 304 112 6 chr3 3341352 3341513 -224183065 - MIR3 SINE MIR -15 193 16 25 31 0 0 chr3 3343116 3343148 -224181430 + AT_rich Low_complexity Low_complexity 1 32 0 651 275 94 17 chr3 3343510 3343797 -224180781 - L1ME3A LINE L1 -341 5829 5521 2219 108 0 7 chr3 3343801 3344108 -224180470 + AluY SINE Alu 1 305 -6 4658 78 8 2 chr3 3344120 3344752 -224179826 + L1PA14 LINE L1 5526 6161 0 254 103 103 17 chr3 3345922 3345980 -224178598 - L1ME4a LINE L1 -18 6103 6041 214 326 116 14 chr3 3346047 3346185 -224178393 - L2 LINE L2 -4 3309 3158 222 351 15 37 chr3 3346197 3346331 -224178247 - L2 LINE L2 -263 3050 2920 946 202 0 22 chr3 3346574 3346752 -224177826 + FAM SINE Alu 1 174 -1 189 292 0 21 chr3 3347371 3347419 -224177159 + MER5A DNA MER1_type 102 148 -41 21 0 0 0 chr3 3347838 3347859 -224176719 + AT_rich Low_complexity Low_complexity 1 21 0 466 272 72 31 chr3 3348780 3348975 -224175603 + MIR SINE MIR 59 261 -1 3748 193 40 29 chr3 3349571 3350728 -224173850 + L1MB7 LINE L1 4959 6127 -57 301 175 0 0 chr3 3350764 3350827 -224173751 + L1MB7 LINE L1 6112 6174 -10 380 292 84 78 chr3 3351332 3351654 -224172924 + LTR16C LTR ERVL 168 491 0 287 253 67 13 chr3 3351678 3351753 -224172825 + MIR SINE MIR 87 165 -97 998 175 74 23 chr3 3351754 3351971 -224172607 + MER68 LTR ERV1 1 228 -334 231 289 13 0 chr3 3352171 3352247 -224172331 - LTR48 LTR ERV1 -332 455 379 953 182 91 0 chr3 3352283 3352470 -224172108 - MER34C LTR ERV1 -381 204 1 791 225 41 118 chr3 3352471 3352836 -224171742 + MER68 LTR ERV1 226 562 0 291 265 36 0 chr3 3352841 3352924 -224171654 + MIR SINE MIR 167 252 -10 2240 59 3 40 chr3 3353069 3353373 -224171205 + AluY SINE Alu 1 293 -18 2045 109 0 7 chr3 3353434 3353753 -224170825 + AluSg1 SINE Alu 2 318 0 277 303 49 17 chr3 3354090 3354218 -224170360 + MIR SINE MIR 18 139 -69 709 286 35 17 chr3 3355041 3355272 -224169306 - MIR SINE MIR -26 236 2 1252 242 43 3 chr3 3356392 3356718 -224167860 + MER58B DNA MER1_type 2 340 -1 237 289 74 8 chr3 3356765 3356886 -224167692 - MIR SINE MIR -42 220 92 256 178 93 124 chr3 3357883 3358012 -224166566 - MIR SINE MIR -5 257 133 196 319 264 0 chr3 3358570 3358661 -224165917 - MIR SINE MIR -69 139 25 1906 153 0 10 chr3 3358907 3359214 -224165364 + AluJo SINE Alu 5 308 -4 643 189 31 20 chr3 3359214 3359410 -224165168 - MER33 DNA MER1_type -19 344 147 383 164 0 41 chr3 3359406 3359479 -224165099 - MER33 DNA MER1_type -250 74 5 * 21 36 0 0 chr3 3360437 3360465 -224164113 + AT_rich Low_complexity Low_complexity 1 28 0 243 240 60 40 chr3 3360634 3360734 -224163844 - MIR SINE MIR -7 255 154 463 287 67 22 chr3 3360777 3361000 -224163578 - L1ME LINE L1 -506 5615 5383 241 301 143 23 chr3 3361896 3362029 -224162549 - MIR3 SINE MIR -2 206 58 1820 105 35 0 chr3 3362335 3362592 -224161986 + AluSq SINE Alu 39 304 -9 25 0 0 0 chr3 3363613 3363638 -224160940 + AT_rich Low_complexity Low_complexity 1 25 0 252 293 96 3 chr3 3364433 3364588 -224159990 + MIR SINE MIR 21 190 -18 497 354 0 18 chr3 3365097 3365326 -224159252 - L2 LINE L2 -357 2957 2733 882 180 12 0 chr3 3365528 3365695 -224158883 + FRAM SINE Alu 1 168 -8 22 35 0 0 chr3 3366374 3366403 -224158175 + AT_rich Low_complexity Low_complexity 1 29 0 2360 31 7 0 chr3 3366936 3367225 -224157353 - AluY SINE Alu -20 291 1 248 313 70 0 chr3 3367713 3367828 -224156750 + MIR3 SINE MIR 62 184 -24 219 360 61 26 chr3 3368636 3368750 -224155828 + L3 LINE CR1 1459 1576 -1 274 260 26 0 chr3 3368763 3368840 -224155738 - MER116 DNA Mariner 0 80 2 22 0 0 0 chr3 3368967 3368989 -224155589 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr3 3369312 3369343 -224155235 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr3 3370419 3370443 -224154135 + AT_rich Low_complexity Low_complexity 1 24 0 438 72 87 14 chr3 3370638 3370707 -224153871 - L1PA11 LINE L1 -4 6170 6097 1200 87 174 0 chr3 3371625 3371821 -224152757 - MER30 DNA MER1_type 0 230 1 1707 139 49 69 chr3 3372222 3372568 -224152010 - MER44D DNA MER2_type 0 609 1 1219 200 69 7 chr3 3372582 3372887 -224151691 + MER33 DNA MER1_type 1 324 0 182 243 0 0 chr3 3373530 3373567 -224151011 - L2 LINE L2 -9 3263 3227 224 247 41 27 chr3 3376086 3376159 -224148419 + L2 LINE L2 2927 3000 -313 522 283 87 6 chr3 3376199 3376372 -224148206 + L2 LINE L2 3119 3305 -8 499 154 11 0 chr3 3377250 3377341 -224147237 + L1MA5A LINE L1 6204 6295 -2 263 329 12 24 chr3 3378459 3378544 -224146034 - MIR SINE MIR -109 99 16 207 258 32 16 chr3 3378612 3378674 -224145904 + MIR SINE MIR 95 157 -105 930 97 148 0 chr3 3378675 3378830 -224145748 + L1MA5A LINE L1 6075 6252 -45 220 220 0 0 chr3 3380179 3380229 -224144349 + (TTTAA)n Simple_repeat Simple_repeat 5 54 0 903 196 0 0 chr3 3381837 3382005 -224142573 - AluJb SINE Alu -7 305 138 6986 55 8 0 chr3 3382091 3383474 -224141104 - L1PA7 LINE L1 -1 6153 4766 9525 99 1 4 chr3 3383474 3384852 -224139726 + L1P3 LINE L1 2477 3849 -2297 7054 86 11 6 chr3 3384837 3385982 -224138596 + L1P3 LINE L1 4335 5473 -681 * 1983 120 3 7 chr3 3385982 3386265 -224138313 + AluSg SINE Alu 1 282 -28 189 0 0 0 chr3 3386265 3386286 -224138292 + (CAAT)n Simple_repeat Simple_repeat 2 22 0 7054 86 11 6 chr3 3386286 3386568 -224138010 + L1P3 LINE L1 5472 5766 -388 21 0 0 0 chr3 3386974 3386995 -224137583 + AT_rich Low_complexity Low_complexity 1 21 0 388 328 17 0 chr3 3386995 3387114 -224137464 + L2 LINE L2 3152 3272 -41 351 274 156 30 chr3 3387141 3387276 -224137302 - MIR SINE MIR -41 221 70 216 193 91 80 chr3 3387560 3387648 -224136930 - MIR SINE MIR -113 149 61 2128 119 39 33 chr3 3387648 3388010 -224136568 - THE1B LTR MaLR 0 364 1 781 196 78 44 chr3 3388390 3388594 -224135984 - MER20 DNA MER1_type -4 215 5 2009 123 0 19 chr3 3388894 3389231 -224135347 - AluSx SINE Alu 0 331 1 858 281 123 28 chr3 3390932 3391331 -224133247 - MLT1J LTR MaLR -4 507 71 184 359 123 0 chr3 3391422 3391528 -224133050 + L2 LINE L2 3151 3269 -3 6796 170 25 19 chr3 3391697 3393066 -224131512 - L1MA4 LINE L1 -11 6289 4903 3080 102 5 0 chr3 3393066 3393506 -224131072 - L1PB1 LINE L1 -1 6150 5709 6796 170 25 19 chr3 3393506 3394497 -224130081 - L1MA4 LINE L1 -1397 4903 3919 268 177 16 32 chr3 3394673 3394735 -224129843 + MARNA DNA Mariner 301 361 -225 195 253 67 80 chr3 3395785 3395860 -224128718 - L3b LINE CR1 0 1583 1510 355 227 113 78 chr3 3396130 3396271 -224128307 - L2 LINE L2 -731 2583 2438 185 306 54 54 chr3 3396280 3396391 -224128187 - MIR SINE MIR -7 255 145 200 287 230 0 chr3 3396654 3396741 -224127837 + L2 LINE L2 3188 3294 -19 260 158 18 0 chr3 3396834 3396891 -224127687 + (TCTA)n Simple_repeat Simple_repeat 3 60 0 2624 7 0 0 chr3 3398099 3398449 -224126129 - AluYb8 SINE Alu 0 350 1 859 130 7 0 chr3 3398455 3398593 -224125985 - L1PA15 LINE L1 -1 6164 6026 532 311 12 6 chr3 3399584 3399748 -224124830 + MIR SINE MIR 30 194 -68 309 214 36 71 chr3 3400135 3400247 -224124331 + L1ME4a LINE L1 5816 5923 -198 26 64 0 0 chr3 3400253 3400300 -224124278 + AT_rich Low_complexity Low_complexity 1 47 0 237 192 61 40 chr3 3400368 3400467 -224124111 - L1ME4a LINE L1 0 6121 6021 1971 132 0 0 chr3 3402301 3402581 -224121997 + AluSx SINE Alu 1 280 -32 270 0 0 0 chr3 3402583 3402613 -224121965 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 2299 107 0 0 chr3 3403840 3404148 -224120430 + AluSg SINE Alu 1 308 -2 2094 128 0 3 chr3 3404369 3404674 -224119904 - AluSx SINE Alu -8 304 1 1444 74 0 0 chr3 3404921 3405097 -224119481 + AluSg/x SINE Alu 86 261 -49 538 287 148 26 chr3 3406839 3407069 -224117509 + MIR SINE MIR 5 262 0 303 272 129 0 chr3 3407674 3407821 -224116757 + L1MC4 LINE L1 7505 7670 -372 224 135 0 19 chr3 3407941 3407993 -224116585 + (TA)n Simple_repeat Simple_repeat 2 52 0 407 257 6 6 chr3 3408065 3408240 -224116338 + (TA)n Simple_repeat Simple_repeat 1 175 0 878 141 0 21 chr3 3408316 3408458 -224116120 - FLAM_C SINE Alu -2 141 3 292 271 25 76 chr3 3408660 3408778 -224115800 - MIR SINE MIR -139 123 12 274 282 182 9 chr3 3409454 3409564 -224115014 + MIR SINE MIR 108 236 -26 2360 161 50 27 chr3 3410859 3411374 -224113204 + L1MB7 LINE L1 5655 6181 -3 296 253 111 52 chr3 3413890 3414256 -224110322 - L1ME4a LINE L1 -93 6028 5536 481 343 122 34 chr3 3414909 3415376 -224109202 + L3 LINE CR1 1057 1564 -13 1710 177 0 3 chr3 3415520 3415987 -224108591 + AluJo SINE Alu 1 466 0 1465 39 0 0 chr3 3415808 3416030 -224108548 + (GAA)n Simple_repeat Simple_repeat 2 223 0 2556 147 19 2 chr3 3416352 3416775 -224107803 - MSTB1 LTR MaLR -2 430 1 25 51 0 0 chr3 3417361 3417400 -224107178 + AT_rich Low_complexity Low_complexity 1 39 0 529 276 17 17 chr3 3417550 3417724 -224106854 + MIR SINE MIR 88 261 -1 696 282 18 26 chr3 3418269 3418496 -224106082 + L1MEc LINE L1 55 279 -6117 227 355 48 0 chr3 3418822 3418946 -224105632 - L2 LINE L2 -469 2845 2716 225 0 0 0 chr3 3419914 3419939 -224104639 + (TTTTA)n Simple_repeat Simple_repeat 3 27 0 2053 117 0 7 chr3 3419945 3420235 -224104343 - AluSx SINE Alu -23 289 2 198 317 35 103 chr3 3420447 3420592 -224103986 + L2 LINE L2 3179 3313 0 2215 253 67 13 chr3 3420632 3421321 -224103257 - L1ME3 LINE L1 -8 6154 5429 459 239 103 19 chr3 3421419 3421574 -224103004 + MIR SINE MIR 95 262 0 886 197 121 10 chr3 3421644 3421842 -224102736 + MIR SINE MIR 43 262 0 915 256 183 28 chr3 3422043 3422469 -224102109 - MLT1H LTR MaLR 0 549 58 1671 163 13 3 chr3 3422554 3422855 -224101723 + AluJb SINE Alu 6 309 -3 8112 39 2 0 chr3 3422876 3424642 -224099936 - L1PA4 LINE L1 -1 6154 4389 317 298 37 42 chr3 3425667 3425882 -224098696 + L2 LINE L2 3021 3234 -79 1790 158 3 10 chr3 3425920 3426230 -224098348 - AluJb SINE Alu -2 310 3 271 309 0 0 chr3 3426233 3426317 -224098261 + L2 LINE L2 3225 3308 -5 1002 171 32 3 chr3 3427529 3427731 -224096847 - L1PB3 LINE L1 -10 6141 5940 22 0 0 0 chr3 3427749 3427771 -224096807 + AT_rich Low_complexity Low_complexity 1 22 0 2242 91 7 3 chr3 3428761 3429069 -224095509 - AluSc SINE Alu 0 309 1 183 184 0 0 chr3 3430188 3430226 -224094352 + (TG)n Simple_repeat Simple_repeat 2 39 0 2070 119 3 0 chr3 3430349 3430642 -224093936 + AluSg SINE Alu 1 294 -16 206 254 55 0 chr3 3431033 3431088 -224093490 + L2 LINE L2 3252 3309 -4 287 360 71 20 chr3 3431202 3431399 -224093179 - MIR SINE MIR -26 236 30 1497 189 107 42 chr3 3431402 3431804 -224092774 - L1MB8 LINE L1 -7 6171 5744 4007 187 30 23 chr3 3433837 3434739 -224089839 - L1MB7 LINE L1 -21 6399 5492 6416 230 57 61 chr3 3434749 3435284 -224089294 - L1MB7 LINE L1 -1420 4962 4426 180 0 0 0 chr3 3435284 3435304 -224089274 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 6416 230 57 61 chr3 3435304 3435354 -224089224 - L1MB7 LINE L1 -1956 4426 4377 2433 57 0 0 chr3 3435354 3435652 -224088926 + AluY SINE Alu 1 298 -13 6416 230 57 61 chr3 3435652 3437723 -224086855 - L1MB7 LINE L1 -2005 4377 2310 338 308 45 0 chr3 3437818 3437951 -224086627 - Charlie8 DNA MER1_type -2207 210 72 379 302 101 13 chr3 3438391 3438540 -224086038 + MIR3 SINE MIR 38 199 -9 255 240 0 0 chr3 3440147 3440197 -224084381 + L2 LINE L2 3264 3313 0 747 165 41 0 chr3 3440265 3440386 -224084192 + AluJo SINE Alu 34 159 -153 318 301 55 55 chr3 3441083 3441481 -224083097 + L1M4 LINE L1 2900 3297 -2849 24 67 0 0 chr3 3442540 3442585 -224081993 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr3 3443228 3443250 -224081328 + AT_rich Low_complexity Low_complexity 1 22 0 728 241 29 0 chr3 3446266 3446436 -224078142 + FAM SINE Alu 1 175 0 1143 195 44 12 chr3 3446863 3447114 -224077464 - AluJo SINE Alu -26 286 28 236 262 0 0 chr3 3447142 3447184 -224077394 - AluJo SINE Alu -260 43 2 237 363 65 0 chr3 3447348 3447472 -224077106 - MIR SINE MIR 0 262 131 225 206 95 0 chr3 3447562 3447625 -224076953 + Tigger2 DNA MER2_type 1 69 -2649 * 2376 127 94 2 chr3 3447623 3448025 -224076553 + Tigger2 DNA MER2_type 2280 2718 0 183 316 53 79 chr3 3448256 3448446 -224076132 + MIR3 SINE MIR 6 190 -18 497 312 75 17 chr3 3449443 3449616 -224074962 + MIR SINE MIR 6 188 -74 2521 167 42 10 chr3 3450406 3450910 -224073668 + L1MB4 LINE L1 5659 6178 -2 1040 211 5 5 chr3 3452167 3452357 -224072221 - MER20 DNA MER1_type -1 218 29 1980 188 54 15 chr3 3453207 3453670 -224070908 + Charlie1b DNA MER1_type 2 482 -41 22 0 0 0 chr3 3453940 3453962 -224070616 + AT_rich Low_complexity Low_complexity 1 22 0 327 213 63 39 chr3 3453976 3454103 -224070475 + Charlie7 DNA MER1_type 2470 2599 -13 1918 202 42 77 chr3 3454190 3454686 -224069892 + MLT2B1 LTR ERVL 1 478 -42 387 0 0 0 chr3 3454686 3454729 -224069849 + (CA)n Simple_repeat Simple_repeat 2 44 0 1918 202 42 77 chr3 3454729 3454762 -224069816 + MLT2B1 LTR ERVL 478 511 -9 379 330 45 16 chr3 3454976 3455122 -224069456 - MIR SINE MIR -62 146 7 282 29 0 0 chr3 3455334 3455369 -224069209 + (TG)n Simple_repeat Simple_repeat 2 36 0 1234 235 66 28 chr3 3456114 3456337 -224068241 + MER39 LTR ERV1 300 544 -163 2282 35 45 3 chr3 3456337 3456627 -224067951 + AluY SINE Alu 1 302 -9 1234 235 66 28 chr3 3456627 3456765 -224067813 + MER39 LTR ERV1 544 675 -32 1310 177 170 0 chr3 3456796 3457090 -224067488 - MER2 DNA MER2_type 0 344 1 321 279 137 0 chr3 3457092 3457275 -224067303 + MER113 DNA MER1_type? 6 213 -308 227 280 13 30 chr3 3457848 3457933 -224066645 + MIR SINE MIR 85 145 -63 283 284 0 12 chr3 3457954 3458035 -224066543 - MIR SINE MIR -21 241 162 2355 211 78 47 chr3 3458057 3458777 -224065801 - MER21B LTR ERV1 -30 833 1 410 269 119 15 chr3 3458794 3458928 -224065650 - MIR SINE MIR -114 148 1 497 218 1 48 chr3 3459593 3459724 -224064854 - MER20 DNA MER1_type -64 155 32 2027 155 21 15 chr3 3459762 3460097 -224064481 + LTR32 LTR ERVL 15 351 -120 859 191 30 6 chr3 3460129 3460297 -224064281 + LTR32 LTR ERVL 300 471 0 2092 36 0 33 chr3 3460817 3461091 -224063487 + L1PA3 LINE L1 5888 6152 -3 412 336 80 29 chr3 3462302 3462374 -224062204 - MIR SINE MIR 0 262 195 2045 130 0 3 chr3 3462374 3462659 -224061919 - AluSx SINE Alu -28 284 1 412 336 80 29 chr3 3462659 3462824 -224061754 - MIR SINE MIR -67 195 13 296 283 107 6 chr3 3463514 3463673 -224060905 - MIR SINE MIR -1 261 87 263 280 32 21 chr3 3464110 3464203 -224060375 - L2 LINE L2 0 3272 3179 388 354 32 6 chr3 3465702 3465860 -224058718 - MIR SINE MIR -86 176 15 1428 216 71 31 chr3 3467958 3468407 -224056171 - MLT1C LTR MaLR 0 467 1 1036 200 16 5 chr3 3468688 3468878 -224055700 + AluJb SINE Alu 89 280 -32 234 0 0 0 chr3 3468886 3468912 -224055666 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 270 0 0 0 chr3 3468911 3468941 -224055637 + (GA)n Simple_repeat Simple_repeat 2 31 0 426 217 167 0 chr3 3469011 3469131 -224055447 - MLT1H LTR MaLR -5 544 405 312 310 44 0 chr3 3469555 3469668 -224054910 + L2 LINE L2 3154 3271 -1 420 269 88 18 chr3 3469956 3470127 -224054451 + Charlie8 DNA MER1_type 74 256 -2161 206 209 90 45 chr3 3470374 3470441 -224054137 + MIR SINE MIR 105 174 -88 1669 171 32 20 chr3 3470581 3470679 -224053899 + L1MB7 LINE L1 5822 5917 -267 2447 108 19 8 chr3 3470679 3471050 -224053528 + THE1C LTR MaLR 1 375 0 1669 171 32 20 chr3 3471050 3471295 -224053283 + L1MB7 LINE L1 5917 6169 -15 3618 124 60 28 chr3 3471341 3471955 -224052623 + MER51A LTR ERV1 1 634 0 2114 183 47 10 chr3 3471974 3472379 -224052199 - MSTB LTR MaLR -6 420 1 2117 120 0 13 chr3 3472479 3472778 -224051800 - AluSg SINE Alu -15 295 1 229 380 71 5 chr3 3473741 3473925 -224050653 - L2 LINE L2 0 3313 3118 21 0 0 0 chr3 3474580 3474601 -224049977 + AT_rich Low_complexity Low_complexity 1 21 0 340 322 50 26 chr3 3474677 3475171 -224049407 - L1MEc LINE L1 -868 1708 1284 870 231 126 40 chr3 3475313 3475611 -224048967 - MLT1I LTR MaLR 0 409 71 2266 104 7 0 chr3 3475611 3475910 -224048668 - AluSx SINE Alu -11 301 1 870 231 126 40 chr3 3475910 3475984 -224048594 - MLT1I LTR MaLR -338 71 5 309 307 12 37 chr3 3476188 3476351 -224048227 - L1MEc LINE L1 -5359 846 688 415 333 64 64 chr3 3476560 3476905 -224047673 - L1MEc LINE L1 -5771 434 90 311 360 27 0 chr3 3477033 3477144 -224047434 + MIR3 SINE MIR 48 161 -47 187 269 115 0 chr3 3478451 3478529 -224046049 - L2 LINE L2 -2489 825 739 267 233 60 69 chr3 3479444 3479560 -224045018 - MIR3 SINE MIR -11 197 83 916 179 25 0 chr3 3479790 3479952 -224044626 - Tigger7 DNA MER2_type -567 166 1 1540 137 92 30 chr3 3479954 3480289 -224044289 + L1MA7 LINE L1 5926 6281 -10 814 108 0 0 chr3 3480309 3480420 -224044158 + AluY SINE Alu 1 111 -200 4175 168 105 54 chr3 3480420 3481589 -224042989 + pTR5 LTR ERV1 743 2027 -411 280 274 11 0 chr3 3481592 3481687 -224042891 + LTR30 LTR ERV1 548 643 -79 1242 90 50 20 chr3 3481708 3481908 -224042670 + LTR12 LTR ERV1 486 691 -23 1543 62 0 19 chr3 3481915 3482126 -224042452 + AluY SINE Alu 102 308 -3 352 309 73 57 chr3 3482176 3482422 -224042156 - MIR SINE MIR -11 251 2 2116 116 0 0 chr3 3482449 3482742 -224041836 + AluSq SINE Alu 1 293 -20 206 373 0 27 chr3 3483454 3483529 -224041049 - MIR SINE MIR -109 99 27 229 188 59 71 chr3 3483592 3483677 -224040901 - LTR67 LTR ERVL -15 542 459 4370 105 14 0 chr3 3484331 3484957 -224039621 - MER41B LTR ERV1 0 635 1 407 279 162 13 chr3 3485239 3485393 -224039185 - MER5A DNA MER1_type 0 189 13 278 320 47 16 chr3 3485451 3485579 -224038999 - MIR3 SINE MIR -40 168 37 432 264 97 7 chr3 3486438 3486593 -224037985 + MIR SINE MIR 84 252 -10 2246 96 0 0 chr3 3487738 3488039 -224036539 - AluY SINE Alu -10 301 1 2369 116 11 21 chr3 3488706 3489085 -224035493 - THE1C LTR MaLR 0 375 1 1075 200 23 5 chr3 3489492 3489707 -224034871 + MER20 DNA MER1_type 1 219 0 31 26 0 0 chr3 3489864 3489902 -224034676 + AT_rich Low_complexity Low_complexity 1 38 0 294 284 167 59 chr3 3490001 3490423 -224034155 - L2 LINE L2 -52 3220 2764 204 318 85 64 chr3 3491458 3491678 -224032900 - MIR SINE MIR -6 256 17 239 304 173 52 chr3 3491690 3491881 -224032697 - MIR SINE MIR -48 214 1 244 325 0 24 chr3 3491908 3491991 -224032587 - L3b LINE CR1 -253 1330 1250 24 0 0 0 chr3 3493918 3493942 -224030636 + AT_rich Low_complexity Low_complexity 1 24 0 2419 75 0 0 chr3 3494646 3494964 -224029614 + AluY SINE Alu 1 318 0 1350 149 164 11 chr3 3495722 3495984 -224028594 - AluSq SINE Alu 0 303 2 2543 46 3 3 chr3 3496227 3496531 -224028047 - AluY SINE Alu -7 304 1 2174 94 3 3 chr3 3497135 3497422 -224027156 - AluSg SINE Alu -23 287 1 466 303 141 29 chr3 3499523 3499800 -224024778 + L2 LINE L2 3003 3310 -3 1967 138 14 0 chr3 3500964 3501247 -224023331 + AluSx SINE Alu 1 287 -25 206 349 0 64 chr3 3504597 3504706 -224019872 - L2 LINE L2 -173 3099 2998 2471 79 0 0 chr3 3505071 3505375 -224019203 + AluSc SINE Alu 1 304 -5 1464 131 36 0 chr3 3505862 3506084 -224018494 - MER30 DNA MER1_type 0 230 1 393 323 31 26 chr3 3506527 3506722 -224017856 - MLT1J1 LTR MaLR -249 197 2 183 250 89 0 chr3 3506738 3506794 -224017784 - L2 LINE L2 -5 3308 3248 204 198 20 40 chr3 3507380 3507481 -224017097 + T-rich Low_complexity Low_complexity 2 100 0 246 279 18 81 chr3 3507580 3507691 -224016887 + MIR SINE MIR 49 152 -56 369 302 6 52 chr3 3507829 3507968 -224016610 + MIR SINE MIR 32 163 -99 2303 96 0 7 chr3 3507968 3508271 -224016307 + AluSp SINE Alu 1 301 -12 369 302 6 52 chr3 3508271 3508303 -224016275 + MIR SINE MIR 163 195 -67 2437 74 0 3 chr3 3509192 3509502 -224015076 - AluY SINE Alu -2 309 1 221 269 216 15 chr3 3509658 3509792 -224014786 + MIR SINE MIR 74 234 -28 28 71 0 0 chr3 3509943 3509999 -224014579 + AT_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr3 3510116 3510140 -224014438 + AT_rich Low_complexity Low_complexity 1 24 0 2260 60 46 0 chr3 3510370 3510653 -224013925 - AluSg SINE Alu -14 296 1 2411 70 0 3 chr3 3510992 3511290 -224013288 + AluSq SINE Alu 1 297 -16 314 379 0 0 chr3 3511423 3511526 -224013052 - L3 LINE CR1 -40 1537 1435 213 205 0 0 chr3 3511531 3511570 -224013008 + (ATG)n Simple_repeat Simple_repeat 1 39 0 579 275 71 6 chr3 3511609 3511791 -224012787 - MIR SINE MIR -63 199 6 492 149 45 22 chr3 3511811 3512040 -224012538 + CT-rich Low_complexity Low_complexity 1 234 0 259 192 58 0 chr3 3512094 3512146 -224012432 - Tigger5 DNA MER2_type -2268 55 1 296 305 34 17 chr3 3512271 3512389 -224012189 + MIR SINE MIR 142 261 -1 294 29 0 0 chr3 3512954 3512989 -224011589 + (TG)n Simple_repeat Simple_repeat 2 36 0 202 50 0 100 chr3 3513434 3513474 -224011104 + (TTTTTA)n Simple_repeat Simple_repeat 1 36 0 236 293 38 57 chr3 3513574 3513647 -224010931 + L2 LINE L2 3169 3241 -31 1652 207 81 29 chr3 3513647 3514091 -224010487 - MLT1C LTR MaLR 0 467 1 236 293 38 57 chr3 3514091 3514123 -224010455 + L2 LINE L2 3241 3272 0 1847 164 0 0 chr3 3516762 3517070 -224007508 + AluSx SINE Alu 1 308 0 2361 75 0 10 chr3 3517075 3517370 -224007208 + AluSx SINE Alu 1 292 -20 206 300 135 38 chr3 3517531 3517768 -224006810 + L2 LINE L2 2933 3192 -121 260 351 0 0 chr3 3517811 3517888 -224006690 + L2 LINE L2 3180 3256 -57 2035 211 130 12 chr3 3517888 3518415 -224006163 + L1MC4 LINE L1 7306 7926 -116 324 0 0 0 chr3 3518415 3518451 -224006127 + (TG)n Simple_repeat Simple_repeat 2 37 0 2035 211 130 12 chr3 3518451 3518577 -224006001 + L1MC4 LINE L1 7926 8036 -6 1236 159 68 0 chr3 3520711 3520962 -224003616 - L1MA6 LINE L1 0 6300 6033 421 143 0 0 chr3 3520998 3521061 -224003517 - MLT1C LTR MaLR -2 465 403 258 136 0 0 chr3 3521061 3521105 -224003473 - L1MA6 LINE L1 -224 6076 6033 1938 196 58 18 chr3 3521138 3521587 -224002991 - MLT1C LTR MaLR 0 467 1 280 109 0 0 chr3 3522152 3522198 -224002380 + MADE1 DNA Mariner 1 46 -34 1789 271 86 31 chr3 3522651 3522984 -224001594 + L1ME2 LINE L1 5372 5685 -479 2123 129 7 0 chr3 3522984 3523286 -224001292 - AluSx SINE Alu -8 304 1 1789 271 86 31 chr3 3523286 3523639 -224000939 + L1ME2 LINE L1 5685 6104 -60 2038 153 25 11 chr3 3523639 3524005 -224000573 - L1PA16 LINE L1 -4 6162 5792 1789 271 86 31 chr3 3524005 3524060 -224000518 + L1ME2 LINE L1 6104 6155 -9 1413 203 53 4 chr3 3524243 3524524 -224000054 - AluJb SINE Alu -17 295 1 206 108 54 0 chr3 3527591 3527628 -223996950 + T-rich Low_complexity Low_complexity 6 44 0 554 280 52 28 chr3 3527665 3527876 -223996702 + MIR SINE MIR 34 249 -13 266 209 0 77 chr3 3528492 3528583 -223995995 + L1MC4 LINE L1 6612 6695 -1347 393 22 0 0 chr3 3528604 3528650 -223995928 + (TA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr3 3528882 3528904 -223995674 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr3 3529043 3529082 -223995496 + AT_rich Low_complexity Low_complexity 1 39 0 294 305 169 0 chr3 3529413 3529531 -223995047 - MIR3 SINE MIR -39 169 32 1307 167 25 21 chr3 3530615 3530897 -223993681 - L1MA4 LINE L1 -9 6291 6009 2272 147 78 40 chr3 3531118 3531568 -223993010 - MLT1C LTR MaLR 0 467 1 239 333 45 58 chr3 3531935 3532091 -223992487 - MIR3 SINE MIR -95 113 4 1818 220 44 80 chr3 3532329 3532981 -223991597 - MLT1E2 LTR MaLR 0 626 1 2974 218 189 21 chr3 3533432 3533786 -223990792 + L1MC4a LINE L1 6610 6903 -905 447 19 0 0 chr3 3533786 3533838 -223990740 + (TAGA)n Simple_repeat Simple_repeat 4 55 0 2974 218 189 21 chr3 3533838 3533940 -223990638 + L1MC4a LINE L1 6903 6987 -821 1735 190 0 28 chr3 3533940 3534261 -223990317 + AluJb SINE Alu 1 312 0 2974 218 189 21 chr3 3534261 3534820 -223989758 + L1MC4a LINE L1 6987 7797 -11 224 323 56 10 chr3 3534821 3534919 -223989659 + MIR SINE MIR 53 142 -66 223 363 105 0 chr3 3534957 3535081 -223989497 + MIR SINE MIR 1 137 -125 317 298 44 9 chr3 3536989 3537103 -223987475 - MIR3 SINE MIR -10 198 81 2359 94 0 0 chr3 3537439 3537746 -223986832 - AluY SINE Alu -4 307 1 244 226 32 11 chr3 3537977 3538070 -223986508 + (TA)n Simple_repeat Simple_repeat 2 96 0 1503 114 55 4 chr3 3539301 3539538 -223985040 + L1PA10 LINE L1 5914 6162 -6 205 51 51 0 chr3 3539827 3539866 -223984712 + (CCTG)n Simple_repeat Simple_repeat 4 44 0 1447 244 29 12 chr3 3540021 3540431 -223984147 - L1ME3 LINE L1 -1 6161 5745 2246 94 0 3 chr3 3540454 3540752 -223983826 - AluSq SINE Alu -16 297 1 515 323 106 0 chr3 3540964 3541199 -223983379 + MIR SINE MIR 3 262 0 2307 92 10 0 chr3 3541746 3542040 -223982538 - AluSx SINE Alu -15 297 1 24 32 0 0 chr3 3542044 3542075 -223982503 + AT_rich Low_complexity Low_complexity 1 31 0 240 285 46 15 chr3 3542945 3543075 -223981503 + L1P LINE L1 3604 3737 -2409 273 295 21 11 chr3 3544505 3544600 -223979978 + MIR SINE MIR 73 168 -94 186 318 45 0 chr3 3544649 3544715 -223979863 - MIR3 SINE MIR -51 157 89 2292 75 0 3 chr3 3544859 3545153 -223979425 - AluY SINE Alu -18 293 1 4477 123 13 20 chr3 3545781 3546526 -223978052 + L1MC1 LINE L1 5594 6333 0 191 383 66 48 chr3 3547226 3547453 -223977125 + L3 LINE CR1 1303 1533 -44 693 317 97 38 chr3 3548300 3548633 -223975945 + LTR16C LTR ERVL 1 368 -123 1932 148 13 0 chr3 3548633 3548931 -223975647 - AluSx SINE Alu -10 302 1 693 317 97 38 chr3 3548931 3549042 -223975536 + LTR16C LTR ERVL 368 471 -20 2136 128 3 0 chr3 3549447 3549751 -223974827 - AluSx SINE Alu -7 305 1 357 279 105 12 chr3 3549949 3550121 -223974457 - MIR SINE MIR -16 246 59 315 170 0 0 chr3 3552090 3552143 -223972435 + L1PA5 LINE L1 5951 6003 -151 40641 68 3 6 chr3 3552718 3558795 -223965783 - L1PA5 LINE L1 -2 6152 86 2451 62 3 3 chr3 3558795 3559100 -223965478 + AluY SINE Alu 1 305 -6 40641 68 3 6 chr3 3559100 3559185 -223965393 - L1PA5 LINE L1 -6068 86 2 225 0 0 0 chr3 3559270 3559295 -223965283 + (A)n Simple_repeat Simple_repeat 1 25 0 318 327 39 20 chr3 3559711 3559975 -223964603 + L1MC4a LINE L1 5637 5822 -299 347 297 0 9 chr3 3560245 3560356 -223964222 - L2 LINE L2 0 3272 3163 364 284 220 15 chr3 3560920 3561188 -223963390 - L2 LINE L2 0 3313 2991 244 175 0 53 chr3 3561190 3561247 -223963331 - L1M2 LINE L1 -455 5836 5783 413 187 0 11 chr3 3561247 3561338 -223963240 + (TG)n Simple_repeat Simple_repeat 2 91 0 2520 165 40 30 chr3 3561339 3561473 -223963105 - L1M2 LINE L1 -519 5793 5662 1367 184 79 11 chr3 3561473 3561632 -223962946 - AluJb SINE Alu -14 298 151 246 32 0 0 chr3 3561632 3561663 -223962915 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1367 184 79 11 chr3 3561663 3561781 -223962797 - AluJb SINE Alu -161 151 2 2520 165 40 30 chr3 3561781 3562521 -223962057 - L1M2 LINE L1 -650 5662 4915 2509 152 24 15 chr3 3562521 3562961 -223961617 + L1MA7 LINE L1 5828 6291 0 199 303 45 34 chr3 3563039 3563128 -223961450 - L2 LINE L2 -315 2957 2868 1812 152 27 3 chr3 3563870 3564166 -223960412 + MER2 DNA MER2_type 1 303 -42 507 231 13 45 chr3 3564219 3564375 -223960203 - MER105 DNA DNA 0 204 54 180 154 26 26 chr3 3564662 3564701 -223959877 + L2 LINE L2 3229 3267 -5 246 105 0 0 chr3 3564702 3564740 -223959838 + (AATTG)n Simple_repeat Simple_repeat 1 38 0 275 204 46 102 chr3 3564815 3564923 -223959655 - L2 LINE L2 -2 3311 3210 305 176 28 28 chr3 3565429 3565537 -223959041 + (TA)n Simple_repeat Simple_repeat 2 109 0 1985 128 0 7 chr3 3566898 3567186 -223957392 + AluSx SINE Alu 1 286 -26 189 171 0 0 chr3 3567209 3567244 -223957334 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 279 229 42 31 chr3 3567585 3567681 -223956897 + MER94 DNA DNA 37 133 -1 851 203 45 17 chr3 3567849 3568026 -223956552 + MER5A DNA MER1_type 8 189 0 198 171 0 0 chr3 3568281 3568322 -223956256 + (TG)n Simple_repeat Simple_repeat 2 42 0 544 13 0 64 chr3 3568798 3568876 -223955702 - L1PA3 LINE L1 0 6155 6083 381 80 0 2 chr3 3568877 3568933 -223955645 + L1PA5 LINE L1 5851 5899 -255 230 243 0 0 chr3 3569325 3569395 -223955183 + L1MC3 LINE L1 6579 6648 -1137 306 211 22 44 chr3 3569433 3569523 -223955055 - L1MC4 LINE L1 -1339 6703 6616 409 216 14 0 chr3 3569528 3569667 -223954911 + (TA)n Simple_repeat Simple_repeat 2 142 0 1133 109 0 0 chr3 3571647 3571812 -223952766 + L1PA14 LINE L1 5997 6161 0 800 311 108 28 chr3 3572762 3573300 -223951278 - L2 LINE L2 -5 3308 2734 279 0 0 0 chr3 3573383 3573414 -223951164 + (GCTG)n Simple_repeat Simple_repeat 4 34 0 255 31 0 0 chr3 3573664 3573696 -223950882 + (TCTA)n Simple_repeat Simple_repeat 2 33 0 23 0 0 0 chr3 3574305 3574328 -223950250 + AT_rich Low_complexity Low_complexity 1 23 0 235 329 75 41 chr3 3574548 3574694 -223949884 + L2 LINE L2 3121 3271 -1 21 0 0 0 chr3 3576132 3576153 -223948425 + AT_rich Low_complexity Low_complexity 1 21 0 249 279 44 6 chr3 3576247 3576405 -223948173 + (TA)n Simple_repeat Simple_repeat 1 164 0 592 349 4 24 chr3 3576427 3576679 -223947899 - MIR SINE MIR -13 249 3 856 138 0 103 chr3 3577898 3577984 -223946594 - L1M3 LINE L1 -572 5762 5701 2313 106 0 0 chr3 3577984 3578286 -223946292 + AluSx SINE Alu 1 302 -10 856 138 0 103 chr3 3578286 3578373 -223946205 - L1M3 LINE L1 -633 5701 5607 2041 169 8 0 chr3 3578375 3578736 -223945842 + L1MB1 LINE L1 5773 6136 -53 1896 158 3 3 chr3 3578736 3579058 -223945520 + AluJb SINE Alu 1 312 0 27 29 0 0 chr3 3580224 3580258 -223944320 + AT_rich Low_complexity Low_complexity 1 34 0 373 347 64 6 chr3 3580783 3580956 -223943622 + MIR3 SINE MIR 15 197 -11 226 341 0 22 chr3 3582169 3582260 -223942318 - MIR SINE MIR -119 143 55 375 330 82 16 chr3 3582637 3582819 -223941759 - MIR SINE MIR -46 216 23 375 330 82 16 chr3 3582910 3583092 -223941486 - MIR SINE MIR -46 216 23 375 330 82 16 chr3 3583183 3583365 -223941213 - MIR SINE MIR -46 216 23 330 346 90 14 chr3 3584616 3584827 -223939751 - MIR SINE MIR -16 246 20 184 217 0 43 chr3 3584847 3584893 -223939685 + L3 LINE CR1 1405 1448 -129 2741 184 4 13 chr3 3585004 3585527 -223939051 - L1MB5 LINE L1 -8 6166 5649 648 269 122 5 chr3 3585544 3585741 -223938837 - MIR SINE MIR -22 240 21 614 274 38 28 chr3 3586304 3586516 -223938062 - L3 LINE CR1 -655 922 709 435 323 15 26 chr3 3588506 3588701 -223935877 - MER117 DNA MER1_type 0 197 5 270 320 104 8 chr3 3589463 3589588 -223934990 - L2 LINE L2 -6 3307 3171 204 24 48 48 chr3 3589978 3590020 -223934558 + (TTAA)n Simple_repeat Simple_repeat 4 45 0 430 364 16 5 chr3 3590032 3590219 -223934359 - MIR SINE MIR -65 197 9 234 298 64 11 chr3 3590239 3590333 -223934245 - MIR3 SINE MIR -47 161 63 610 253 118 27 chr3 3590356 3590577 -223934001 - MIR SINE MIR 0 262 22 785 222 12 18 chr3 3590618 3590789 -223933789 + MER20 DNA MER1_type 31 200 -19 617 182 45 0 chr3 3591517 3591649 -223932929 - MER33 DNA MER1_type -131 193 56 2189 112 7 0 chr3 3592129 3592433 -223932145 + AluSq SINE Alu 1 306 -7 273 289 50 63 chr3 3593217 3593376 -223931202 - MER5A DNA MER1_type -3 186 30 766 138 86 0 chr3 3593636 3593788 -223930790 + L1MB4 LINE L1 6011 6175 -5 2261 93 3 13 chr3 3594048 3594361 -223930217 + AluSx SINE Alu 3 312 0 303 93 0 0 chr3 3595594 3595637 -223928941 + (TTTC)n Simple_repeat Simple_repeat 2 44 0 374 311 123 34 chr3 3596102 3596337 -223928241 + MIR SINE MIR 7 262 0 279 322 98 9 chr3 3596533 3596714 -223927864 - MIR3 SINE MIR -60 202 4 387 283 78 95 chr3 3597284 3597694 -223926884 - MLT1L LTR MaLR -93 522 120 2035 114 3 36 chr3 3598718 3599026 -223925552 - AluY SINE Alu -13 298 1 224 344 32 71 chr3 3599492 3599646 -223924932 - L2 LINE L2 -6 3266 3119 227 67 7 5 chr3 3600688 3600823 -223923755 + AluSg/x SINE Alu 102 301 -2 180 0 0 0 chr3 3600871 3600891 -223923687 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1784 166 7 0 chr3 3600901 3601190 -223923388 - AluSx SINE Alu -21 291 1 2317 100 10 0 chr3 3601603 3601904 -223922674 + AluSq SINE Alu 1 304 -9 187 329 25 0 chr3 3601907 3601986 -223922592 + L2 LINE L2 2590 2670 -644 791 229 0 61 chr3 3602090 3602304 -223922274 - MER3 DNA MER1_type -8 201 1 2255 94 3 7 chr3 3602382 3602680 -223921898 + AluSp SINE Alu 1 297 -16 181 341 24 24 chr3 3602932 3603017 -223921561 + L2 LINE L2 3188 3272 0 285 296 28 28 chr3 3603517 3603659 -223920919 - L1ME LINE L1 -298 5823 5682 378 224 224 0 chr3 3604418 3604525 -223920053 - MIR SINE MIR -128 134 4 274 331 103 14 chr3 3604696 3604841 -223919737 + L3 LINE CR1 324 481 -1096 1272 236 59 13 chr3 3605108 3605481 -223919097 + L1MB7 LINE L1 5779 6168 -16 634 266 108 9 chr3 3605557 3605779 -223918799 + L3 LINE CR1 589 832 -745 24 32 0 0 chr3 3606004 3606035 -223918543 + AT_rich Low_complexity Low_complexity 1 31 0 442 325 104 0 chr3 3606048 3606260 -223918318 - MIR SINE MIR -24 238 5 3545 94 0 0 chr3 3607069 3607550 -223917028 - L1PA11 LINE L1 0 6174 5694 28 48 0 0 chr3 3607558 3607600 -223916978 + AT_rich Low_complexity Low_complexity 1 42 0 4910 215 39 34 chr3 3608443 3609653 -223914925 + L1MC/D LINE L1 3659 4878 -1268 2200 113 0 10 chr3 3609653 3610096 -223914482 - AluSx SINE Alu 0 312 1 4910 215 39 34 chr3 3610096 3610283 -223914295 + L1MC/D LINE L1 4878 5063 -1083 1884 128 68 44 chr3 3610284 3610650 -223913928 + THE1C LTR MaLR 1 375 0 9788 123 37 4 chr3 3610650 3612171 -223912407 + THE1C-int LTR MaLR 1 1580 0 2191 123 53 8 chr3 3612171 3612529 -223912049 + THE1C LTR MaLR 1 374 -1 1040 208 42 23 chr3 3612537 3612955 -223911623 + L1MC/D LINE L1 5067 5490 -743 6728 125 135 91 chr3 3613385 3615011 -223909567 + pTR5 LTR ERV1 741 2437 -1 185 0 40 0 chr3 3616281 3616306 -223908272 + (TTTTG)n Simple_repeat Simple_repeat 5 30 0 2414 143 44 1 chr3 3616889 3617402 -223907176 + MER6A DNA MER2_type 1 605 0 180 200 0 0 chr3 3618434 3618474 -223906104 + CT-rich Low_complexity Low_complexity 1 40 0 201 283 17 33 chr3 3620798 3620858 -223903720 + L2 LINE L2 3206 3264 -8 1045 261 48 85 chr3 3622261 3622744 -223901834 + MLT1J LTR MaLR 3 467 -44 4545 133 41 13 chr3 3622768 3623517 -223901061 - MER4D LTR ERV1 0 903 134 2274 107 6 21 chr3 3624148 3624486 -223900092 + MER1B DNA MER1_type 5 337 0 1449 206 127 2 chr3 3625440 3625825 -223898753 - MLT2B2 LTR ERVL -7 508 2 748 203 7 0 chr3 3626937 3627080 -223897498 - L1MC/D LINE L1 -602 5640 5497 1813 149 0 32 chr3 3627097 3627429 -223897149 - AluJb SINE Alu 0 312 9 1071 194 60 39 chr3 3627429 3627453 -223897125 - L1MC/D LINE L1 -1013 5133 5111 2250 110 3 0 chr3 3627453 3627744 -223896834 - AluSx SINE Alu -20 292 1 1071 194 60 39 chr3 3627744 3628002 -223896576 - L1MC/D LINE L1 -1035 5111 4845 598 182 16 107 chr3 3627996 3628183 -223896395 + L1MB7 LINE L1 6010 6179 -5 * 1330 268 26 17 chr3 3628207 3628741 -223895837 - L1MC/D LINE L1 -1310 4836 4298 248 272 35 46 chr3 3629072 3629245 -223895333 - HAL1 LINE L1 -913 1594 1424 512 269 8 35 chr3 3629414 3629598 -223894980 - L1ME2 LINE L1 0 6166 5984 1651 206 72 60 chr3 3630003 3630436 -223894142 - MLT1D LTR MaLR 0 505 68 1800 153 0 15 chr3 3630448 3630801 -223893777 + Tigger4(Zombi) DNA MER2_type 34 2727 -4 331 162 59 15 chr3 3630800 3630868 -223893710 - MLT1D LTR MaLR -428 77 7 * 291 227 76 0 chr3 3631073 3631139 -223893439 + MER91C DNA MER1_type 36 106 -34 338 303 46 28 chr3 3631367 3631476 -223893102 - MIR SINE MIR -61 147 37 298 338 127 19 chr3 3631635 3631792 -223892786 - L2 LINE L2 0 3272 3099 1023 211 79 4 chr3 3632086 3632314 -223892264 - MIR SINE MIR -1 261 17 205 277 27 74 chr3 3632509 3632657 -223891921 - L2 LINE L2 -509 2805 2665 1034 245 112 99 chr3 3633196 3634044 -223890534 + L1MC4 LINE L1 7178 8036 -6 258 81 0 0 chr3 3635182 3635219 -223889359 + L2 LINE L2 3276 3312 -1 477 151 264 0 chr3 3635881 3635987 -223888591 - MER20 DNA MER1_type -24 195 62 2164 94 0 63 chr3 3636089 3636420 -223888158 + AluSg SINE Alu 1 310 0 311 254 35 122 chr3 3638920 3639117 -223885461 - MIR3 SINE MIR -13 195 16 229 315 22 11 chr3 3639298 3639390 -223885188 - MER102b DNA MER1_type -15 326 234 796 171 0 0 chr3 3643012 3643141 -223881437 + FLAM_A SINE Alu 1 129 -4 244 287 161 0 chr3 3643295 3643382 -223881196 + MIR3 SINE MIR 81 181 -27 180 164 66 0 chr3 3643512 3643573 -223881005 + CT-rich Low_complexity Low_complexity 1 65 0 222 193 23 23 chr3 3643589 3643677 -223880901 + CT-rich Low_complexity Low_complexity 6 93 0 200 276 0 0 chr3 3645572 3645630 -223878948 + GA-rich Low_complexity Low_complexity 3 60 0 180 0 0 0 chr3 3646871 3646891 -223877687 + (TG)n Simple_repeat Simple_repeat 1 20 0 1564 250 101 2 chr3 3647466 3647894 -223876684 - MER34 LTR ERV1 -47 495 26 237 258 103 52 chr3 3648234 3648389 -223876189 - MER102a DNA MER1_type -15 315 153 2092 141 3 3 chr3 3648916 3649229 -223875349 - AluSq SINE Alu 0 313 1 260 287 13 102 chr3 3649519 3649676 -223874902 - L2 LINE L2 0 3313 3171 378 0 0 0 chr3 3650805 3650847 -223873731 + (TG)n Simple_repeat Simple_repeat 1 42 0 364 280 40 0 chr3 3651325 3651425 -223873153 - MER5A DNA MER1_type -77 112 9 2192 197 83 10 chr3 3652647 3653155 -223871423 - L1MB8 LINE L1 -15 6163 5619 183 404 57 7 chr3 3655589 3655730 -223868848 + MIR3 SINE MIR 45 192 -16 300 111 0 0 chr3 3656065 3656110 -223868468 + (CTG)n Simple_repeat Simple_repeat 3 47 0 3582 163 16 5 chr3 3657476 3658146 -223866432 - L1MA5 LINE L1 -5 6295 5618 273 57 0 0 chr3 3658430 3658465 -223866113 + (GGA)n Simple_repeat Simple_repeat 2 36 0 2300 96 0 3 chr3 3658962 3659263 -223865315 - AluSc SINE Alu -9 300 1 891 200 0 11 chr3 3660905 3661080 -223863498 - AluJb SINE Alu -9 303 131 208 404 9 9 chr3 3661661 3661770 -223862808 + MIR SINE MIR 38 146 -116 6900 43 36 2 chr3 3661789 3663114 -223861464 - L1PA5 LINE L1 0 6154 4786 219 139 0 0 chr3 3663475 3663511 -223861067 + (CTG)n Simple_repeat Simple_repeat 3 38 0 743 168 0 0 chr3 3665243 3665368 -223859210 - FLAM_C SINE Alu -7 136 12 320 330 48 37 chr3 3665491 3665679 -223858899 + MIR SINE MIR 4 193 -69 225 244 0 0 chr3 3666396 3666441 -223858137 + (TCCA)n Simple_repeat Simple_repeat 3 47 0 1800 188 106 33 chr3 3666588 3667013 -223857565 + MLT1C LTR MaLR 4 459 -8 325 307 62 36 chr3 3667525 3667717 -223856861 - L1ME4a LINE L1 -223 5898 5702 243 0 0 0 chr3 3668725 3668752 -223855826 + (TG)n Simple_repeat Simple_repeat 2 28 0 209 280 14 140 chr3 3673076 3673219 -223851359 - L2 LINE L2 -10 3303 3179 4438 276 52 9 chr3 3673227 3674454 -223850124 - L1P LINE L1 -2695 3451 2172 4938 115 40 24 chr3 3674456 3675280 -223849298 + L1PA15 LINE L1 5329 6165 0 186 338 65 57 chr3 3675711 3675837 -223848741 - L2 LINE L2 -839 2475 2351 1802 165 3 7 chr3 3675837 3676171 -223848407 - AluSq SINE Alu 0 333 1 186 338 65 57 chr3 3676171 3676306 -223848272 - L2 LINE L2 -963 2351 2211 15424 95 3 22 chr3 3676568 3678900 -223845678 - L1PA7 LINE L1 -803 5343 3057 6599 50 0 2 chr3 3678900 3679718 -223844860 + L1PA7 LINE L1 5336 6151 -3 216 259 183 46 chr3 3681503 3681634 -223842944 + MIR3 SINE MIR 2 150 -58 665 241 26 101 chr3 3683170 3683398 -223841180 - MER58A DNA MER1_type -3 221 11 328 237 79 66 chr3 3683518 3683670 -223840908 - MER103 DNA DNA -12 154 1 225 215 101 0 chr3 3685232 3685311 -223839267 - L1MC4 LINE L1 -1339 6703 6617 2351 56 0 75 chr3 3686052 3686374 -223838204 + AluY SINE Alu 1 298 -13 1675 276 58 9 chr3 3686719 3687266 -223837312 - L1MC4a LINE L1 -2 7806 7233 353 293 64 0 chr3 3688040 3688180 -223836398 + MIR SINE MIR 100 248 -14 333 239 110 28 chr3 3688475 3688584 -223835994 + L2 LINE L2 3193 3310 -3 1987 164 0 6 chr3 3688737 3689048 -223835530 - AluJb SINE Alu -3 309 1 333 275 181 29 chr3 3689133 3689304 -223835274 - MIR SINE MIR -49 213 17 258 159 87 58 chr3 3689350 3689419 -223835159 + L2 LINE L2 3177 3247 -66 556 281 94 0 chr3 3690231 3690402 -223834176 - MIR SINE MIR -57 205 19 402 286 66 28 chr3 3690409 3690591 -223833987 + MER117 DNA MER1_type 2 190 -7 3735 143 22 14 chr3 3690838 3691320 -223833258 - L1PA16 LINE L1 -11 6155 5665 1769 181 0 13 chr3 3691320 3691634 -223832944 - AluJo SINE Alu -2 310 1 3735 143 22 14 chr3 3691634 3691782 -223832796 - L1PA16 LINE L1 -501 5665 5520 265 274 11 32 chr3 3691783 3691878 -223832700 + L1MB8 LINE L1 6028 6120 -58 194 350 100 0 chr3 3691970 3692090 -223832488 + MIR SINE MIR 131 262 0 237 304 88 0 chr3 3692384 3692565 -223832013 + HAL1 LINE L1 1918 2114 -393 234 198 111 0 chr3 3692665 3692746 -223831832 + HAL1 LINE L1 2244 2333 -174 270 313 240 7 chr3 3693140 3693290 -223831288 - MIR3 SINE MIR -3 205 21 356 354 18 18 chr3 3694868 3695030 -223829548 + MIR SINE MIR 32 192 -70 250 337 99 35 chr3 3695288 3695460 -223829118 - MIR SINE MIR -78 184 2 2249 99 3 7 chr3 3695688 3695992 -223828586 - AluY SINE Alu -8 303 1 214 295 67 19 chr3 3696131 3696236 -223828342 - MIR SINE MIR -23 239 130 326 269 42 152 chr3 3696393 3696702 -223827876 + L2 LINE L2 2994 3268 -4 207 0 0 0 chr3 3696924 3696947 -223827631 + (A)n Simple_repeat Simple_repeat 1 23 0 511 63 0 13 chr3 3698054 3698133 -223826445 + L1MA7 LINE L1 6212 6289 -2 261 333 13 0 chr3 3698284 3698359 -223826219 - MIR SINE MIR -97 111 36 230 347 51 10 chr3 3698525 3698623 -223825955 + L2 LINE L2 3144 3245 -27 489 267 48 59 chr3 3698756 3698783 -223825795 + Charlie8 DNA MER1_type 39 65 -1363 1971 143 0 10 chr3 3698783 3699083 -223825495 - AluJo SINE Alu -15 297 1 489 267 48 59 chr3 3699083 3699307 -223825271 + Charlie8 DNA MER1_type 65 1383 -45 2176 123 7 0 chr3 3700712 3701022 -223823556 + AluSx SINE Alu 1 312 0 359 295 27 9 chr3 3701299 3701411 -223823167 - L2 LINE L2 0 3272 3159 481 321 9 71 chr3 3701495 3701719 -223822859 - MIR SINE MIR -7 255 46 2179 118 3 6 chr3 3702541 3702855 -223821723 + AluSp SINE Alu 1 313 0 721 204 5 5 chr3 3703629 3703820 -223820758 + L1MA4 LINE L1 6104 6294 -6 1880 131 7 0 chr3 3703837 3704111 -223820467 + AluSx SINE Alu 1 276 -36 991 293 19 74 chr3 3704143 3704416 -223820162 + L2 LINE L2 2908 3150 -163 2293 86 0 43 chr3 3704416 3704741 -223819837 - AluY SINE Alu 0 311 1 991 293 19 74 chr3 3704741 3704897 -223819681 + L2 LINE L2 3150 3313 0 2146 136 0 0 chr3 3705150 3705452 -223819126 - AluSx SINE Alu -8 304 3 302 263 11 21 chr3 3705739 3705834 -223818744 + LTR16C LTR ERVL 393 486 -5 348 341 103 0 chr3 3706075 3706201 -223818377 + MIR3 SINE MIR 65 203 -5 429 320 92 44 chr3 3708035 3708285 -223816293 + MIR SINE MIR 1 262 0 227 255 0 0 chr3 3708438 3708489 -223816089 + (ATGGTG)n Simple_repeat Simple_repeat 1 51 0 237 65 0 0 chr3 3708640 3708671 -223815907 + (TG)n Simple_repeat Simple_repeat 2 32 0 395 330 139 14 chr3 3709361 3709576 -223815002 - MIR SINE MIR -15 247 6 681 255 34 0 chr3 3709642 3709791 -223814787 + MER5A DNA MER1_type 1 154 -35 251 284 126 11 chr3 3710008 3710103 -223814475 - MIR SINE MIR -96 166 61 2601 167 21 4 chr3 3710295 3710774 -223813804 + L1MB7 LINE L1 5682 6168 -16 214 281 211 47 chr3 3710905 3711033 -223813545 - MIR3 SINE MIR -50 158 10 274 297 117 39 chr3 3711886 3712014 -223812564 - MIR3 SINE MIR -11 197 60 221 297 102 47 chr3 3712332 3712460 -223812118 - L2 LINE L2 -1 3312 3178 254 282 17 60 chr3 3712564 3712681 -223811897 + MIR SINE MIR 4 115 -147 2187 123 23 0 chr3 3713029 3713331 -223811247 + AluSq SINE Alu 2 310 -3 410 132 13 0 chr3 3713475 3713551 -223811027 + (TAGG)n Simple_repeat Simple_repeat 3 79 0 5758 36 1 0 chr3 3713767 3714457 -223810121 + L1PA4 LINE L1 5464 6154 -1 235 279 64 79 chr3 3714624 3714764 -223809814 - MIR SINE MIR -43 219 82 199 0 31 31 chr3 3714865 3714897 -223809681 + (TTG)n Simple_repeat Simple_repeat 2 33 0 2118 108 7 0 chr3 3714903 3715189 -223809389 - AluSq SINE Alu -17 296 9 257 333 24 0 chr3 3716488 3716572 -223808006 + MIR3 SINE MIR 69 154 -54 25 31 0 0 chr3 3716659 3716691 -223807887 + AT_rich Low_complexity Low_complexity 1 32 0 686 251 63 58 chr3 3716712 3716965 -223807613 + MER113 DNA MER1_type? 172 430 -91 2048 124 3 3 chr3 3716965 3717271 -223807307 - AluSg SINE Alu 0 306 1 686 251 63 58 chr3 3717271 3717363 -223807215 + MER113 DNA MER1_type? 430 520 -1 198 0 0 0 chr3 3717392 3717414 -223807164 + (A)n Simple_repeat Simple_repeat 1 22 0 1747 221 86 8 chr3 3718194 3718670 -223805908 - MLT1F1 LTR MaLR -54 513 1 808 323 51 51 chr3 3718680 3718854 -223805724 + L2 LINE L2 2564 2737 -535 1958 111 0 0 chr3 3718854 3719116 -223805462 - AluSx SINE Alu -3 309 48 808 323 51 51 chr3 3719116 3719436 -223805142 + L2 LINE L2 2737 3053 -219 411 236 71 7 chr3 3719483 3719623 -223804955 - L1MA10 LINE L1 -7 6327 6179 282 317 146 0 chr3 3719731 3719854 -223804724 + L2 LINE L2 3132 3272 0 2868 6 0 0 chr3 3719959 3720270 -223804308 - AluYa5 SINE Alu 0 311 1 1675 181 3 13 chr3 3720472 3720787 -223803791 - AluJo SINE Alu 0 312 1 2236 130 16 32 chr3 3721004 3721374 -223803204 + THE1B LTR MaLR 1 364 0 343 271 66 60 chr3 3721926 3722092 -223802486 - MIR SINE MIR -44 218 52 2210 96 10 10 chr3 3723023 3723325 -223801253 - AluSx SINE Alu -10 302 1 195 114 0 0 chr3 3723371 3723406 -223801172 + (TG)n Simple_repeat Simple_repeat 2 36 0 333 295 65 29 chr3 3723652 3723791 -223800787 - L3 LINE CR1 -498 1079 936 469 298 82 33 chr3 3725134 3725379 -223799199 - MIR SINE MIR -4 258 2 21 36 0 0 chr3 3727540 3727568 -223797010 + AT_rich Low_complexity Low_complexity 1 28 0 504 311 13 0 chr3 3727835 3727986 -223796592 - MIR SINE MIR -100 162 10 255 61 0 0 chr3 3728609 3728642 -223795936 + (T)n Simple_repeat Simple_repeat 1 33 0 7166 45 2 8 chr3 3728818 3730356 -223794222 - L1PA5 LINE L1 -8 6146 4610 7339 52 4 0 chr3 3730356 3731321 -223793257 + L1PA5 LINE L1 3647 4615 -1531 578 260 148 51 chr3 3732420 3732793 -223791785 - MLT1I LTR MaLR 0 409 1 572 274 55 20 chr3 3732950 3733151 -223791427 - L2 LINE L2 -1 3312 3105 813 202 0 0 chr3 3733269 3733442 -223791136 - L1MA10 LINE L1 -1 6333 6161 523 195 0 18 chr3 3733488 3733601 -223790977 - L1MB1 LINE L1 -44 6145 6035 1280 188 90 0 chr3 3733622 3733888 -223790690 - AluJo SINE Alu -22 290 1 1359 231 65 39 chr3 3733901 3734317 -223790261 - L2 LINE L2 -407 2907 2481 377 329 150 28 chr3 3734349 3734901 -223789677 - L2 LINE L2 0 3313 2682 1511 90 9 9 chr3 3734901 3735112 -223789466 + L1PA10 LINE L1 5954 6164 -4 377 329 150 28 chr3 3735112 3735187 -223789391 - L2 LINE L2 -631 2682 2618 548 302 61 27 chr3 3735805 3736194 -223788384 + L1ME3A LINE L1 5551 5949 -217 360 0 0 0 chr3 3736216 3736256 -223788322 + (CA)n Simple_repeat Simple_repeat 1 40 0 29 28 0 0 chr3 3736494 3736530 -223788048 + AT_rich Low_complexity Low_complexity 1 36 0 999 182 0 17 chr3 3736943 3737119 -223787459 + FRAM SINE Alu 1 173 -3 1484 130 0 63 chr3 3737162 3737415 -223787163 - AluSg SINE Alu -73 237 1 1401 210 24 48 chr3 3737761 3738133 -223786445 + MLT1A1 LTR MaLR 1 363 -2 24 91 0 0 chr3 3738385 3738451 -223786127 + AT_rich Low_complexity Low_complexity 1 66 0 249 266 117 0 chr3 3738611 3738705 -223785873 + L2 LINE L2 3168 3272 0 21 0 0 0 chr3 3738811 3738832 -223785746 + AT_rich Low_complexity Low_complexity 1 21 0 265 316 0 0 chr3 3739665 3739744 -223784834 - MIR SINE MIR -54 208 130 288 137 0 0 chr3 3739930 3739981 -223784597 + (A)n Simple_repeat Simple_repeat 1 51 0 297 0 0 0 chr3 3740747 3740780 -223783798 + (CA)n Simple_repeat Simple_repeat 2 34 0 1724 147 7 7 chr3 3740788 3741094 -223783484 - MER47A DNA MER2_type -1 365 60 376 309 57 17 chr3 3741878 3742053 -223782525 - MLT1L LTR MaLR -345 270 89 1076 287 176 33 chr3 3742550 3743499 -223781079 - L2 LINE L2 -4 3309 2216 374 264 0 8 chr3 3744244 3744372 -223780206 - L1MB7 LINE L1 -5 6161 6043 4813 80 35 1 chr3 3744664 3745330 -223779248 - L1PA8A LINE L1 0 6131 5444 4396 106 10 0 chr3 3745330 3746059 -223778519 + L1P LINE L1 4690 5422 -743 2210 103 0 13 chr3 3746060 3746362 -223778216 - AluSc SINE Alu -11 298 1 208 176 0 0 chr3 3746656 3746690 -223777888 - MIR SINE MIR -23 239 206 180 205 26 0 chr3 3746782 3746821 -223777757 + MIR SINE MIR 200 239 -23 186 172 0 125 chr3 3746821 3746885 -223777693 + MIR SINE MIR 200 255 -7 378 201 35 7 chr3 3746886 3747030 -223777548 + (TATATG)n Simple_repeat Simple_repeat 3 150 0 560 244 60 50 chr3 3747139 3747340 -223777238 - MIR SINE MIR -58 204 2 285 309 56 32 chr3 3747712 3747838 -223776740 + L2 LINE L2 3167 3295 -18 1667 177 3 3 chr3 3748858 3749146 -223775432 + AluJo SINE Alu 1 288 -24 361 373 20 15 chr3 3749595 3749796 -223774782 + MIR SINE MIR 51 252 -10 2041 41 0 34 chr3 3750032 3750301 -223774277 + L1PA7 LINE L1 5894 6153 -1 1376 118 86 14 chr3 3750996 3751216 -223773362 - AluSx SINE Alu -76 236 1 561 311 50 25 chr3 3751282 3751520 -223773058 - MIR SINE MIR 0 262 19 757 247 174 12 chr3 3752566 3752910 -223771668 + Charlie4a DNA MER1_type 82 481 -27 2080 133 3 7 chr3 3753269 3753577 -223771001 - AluSx SINE Alu -5 307 1 541 303 76 5 chr3 3753578 3753763 -223770815 + MIR SINE MIR 48 245 -17 339 299 125 21 chr3 3754244 3754675 -223769903 - L1ME3A LINE L1 -275 5895 5420 325 293 30 15 chr3 3754692 3754890 -223769688 - L1ME3A LINE L1 -860 5286 5086 2183 55 0 15 chr3 3754899 3755171 -223769407 + AluY SINE Alu 44 311 0 433 284 46 0 chr3 3755720 3755829 -223768749 + MER81 DNA DNA 1 114 0 2596 53 0 0 chr3 3756137 3756439 -223768139 - AluY SINE Alu -9 302 1 1232 199 11 14 chr3 3757769 3758045 -223766533 + MLT1B LTR MaLR 116 390 0 583 279 7 13 chr3 3758619 3758773 -223765805 + MER58A DNA MER1_type 3 155 0 2021 124 0 14 chr3 3758805 3759096 -223765482 + AluSx SINE Alu 7 293 -19 234 0 0 0 chr3 3759348 3759374 -223765204 + (TG)n Simple_repeat Simple_repeat 2 27 0 24 32 0 0 chr3 3760257 3760288 -223764290 + AT_rich Low_complexity Low_complexity 1 31 0 1551 175 7 78 chr3 3760389 3760697 -223763881 + AluJo SINE Alu 1 286 -26 228 67 0 0 chr3 3760698 3760728 -223763850 + (CA)n Simple_repeat Simple_repeat 2 31 0 204 125 0 0 chr3 3760729 3760761 -223763817 + (TATG)n Simple_repeat Simple_repeat 3 34 0 465 337 57 26 chr3 3761333 3761526 -223763052 - MIR SINE MIR -11 251 53 204 122 73 0 chr3 3761600 3761682 -223762896 + (TA)n Simple_repeat Simple_repeat 1 88 0 2058 100 0 78 chr3 3763191 3763522 -223761056 + AluY SINE Alu 1 305 -6 3479 93 12 14 chr3 3764347 3764842 -223759736 + LOR1a LTR ERV1 1 494 -3 1893 167 0 19 chr3 3765539 3765884 -223758694 - AluJb SINE Alu 0 339 1 192 235 136 25 chr3 3765965 3766046 -223758532 - MIR SINE MIR -153 109 20 1372 272 79 88 chr3 3767295 3768319 -223756259 + L2 LINE L2 2289 3313 0 198 143 0 0 chr3 3769269 3769304 -223755274 + (TG)n Simple_repeat Simple_repeat 1 35 0 1865 176 66 15 chr3 3770621 3771122 -223753456 - MLT2A2 LTR ERVL -1 553 3 466 352 5 9 chr3 3771508 3771718 -223752860 + MIR SINE MIR 42 250 -12 1788 151 7 0 chr3 3771813 3772116 -223752462 - AluSx SINE Alu 0 305 1 402 234 110 28 chr3 3772211 3772356 -223752222 - L2 LINE L2 -48 3265 3109 182 327 0 0 chr3 3774702 3774757 -223749821 + MIR SINE MIR 87 141 -67 643 269 34 17 chr3 3775004 3775179 -223749399 + MIR SINE MIR 75 252 -10 1930 191 26 0 chr3 3775257 3775635 -223748943 - MLT1B LTR MaLR 0 390 3 2214 92 3 0 chr3 3775742 3776047 -223748531 + AluSq SINE Alu 1 306 0 239 282 13 13 chr3 3776258 3776336 -223748242 + MIR SINE MIR 71 148 -114 9384 133 15 8 chr3 3776900 3778475 -223746103 + Tigger1 DNA MER2_type 3 1589 -829 927 126 16 0 chr3 3778476 3778603 -223745975 + AluSq/x SINE Alu 3 131 -181 356 153 34 0 chr3 3778603 3778721 -223745857 + (TA)n Simple_repeat Simple_repeat 1 122 0 4472 144 33 9 chr3 3778742 3779553 -223745025 + Tigger1 DNA MER2_type 1577 2407 -11 828 129 0 23 chr3 3780196 3780319 -223744259 + AluJo/FLAM SINE Alu 1 122 -180 2202 120 0 13 chr3 3780319 3780635 -223743943 - AluSx SINE Alu 0 312 1 708 147 0 0 chr3 3780748 3780850 -223743728 + FRAM SINE Alu 45 146 -30 802 241 21 70 chr3 3781438 3781766 -223742812 - MARNA DNA Mariner -120 466 155 224 254 0 56 chr3 3782074 3782145 -223742433 - MIR SINE MIR -127 135 69 257 310 118 48 chr3 3784505 3784734 -223739844 + L3 LINE CR1 1253 1497 -80 484 284 44 29 chr3 3785026 3785230 -223739348 + L2 LINE L2 3107 3313 0 300 291 6 91 chr3 3786668 3786724 -223737854 - MIR SINE MIR -34 228 169 1820 138 71 15 chr3 3786724 3787049 -223737529 + MER61A LTR ERV1 1 343 0 300 291 6 91 chr3 3787049 3787157 -223737421 - MIR SINE MIR -93 169 78 254 223 66 0 chr3 3787325 3787408 -223737170 - MIR SINE MIR -65 143 90 504 45 0 0 chr3 3787572 3787639 -223736939 + (CA)n Simple_repeat Simple_repeat 2 68 0 2189 114 13 3 chr3 3787810 3788117 -223736461 + AluSx SINE Alu 1 310 -2 292 308 17 50 chr3 3789448 3789568 -223735010 - MIR3 SINE MIR -15 193 78 257 233 17 0 chr3 3789596 3789656 -223734922 - MIR SINE MIR -3 259 199 21 36 0 0 chr3 3790129 3790157 -223734421 + AT_rich Low_complexity Low_complexity 1 28 0 2331 92 13 0 chr3 3790160 3790463 -223734115 + AluSp SINE Alu 1 307 -6 276 343 153 7 chr3 3790651 3790788 -223733790 - L2 LINE L2 -5 3267 3111 850 326 86 10 chr3 3790869 3791265 -223733313 - MLT1J1 LTR MaLR -13 433 8 2161 128 0 28 chr3 3791440 3791761 -223732817 + AluSx SINE Alu 1 312 0 1792 171 26 61 chr3 3792363 3792819 -223731759 + L1MB8 LINE L1 5732 6171 -7 7261 47 3 0 chr3 3793329 3794401 -223730177 + L1PA5 LINE L1 5079 6153 -1 23181 59 7 9 chr3 3796573 3799749 -223724829 - L1P LINE L1 -2962 3184 14 202 281 167 21 chr3 3799872 3799968 -223724610 - L2 LINE L2 -42 3230 3121 216 372 74 8 chr3 3800142 3800263 -223724315 + MIR SINE MIR 21 149 -113 1092 216 124 63 chr3 3800364 3800549 -223724029 + MLT1H LTR MaLR 7 179 -370 2289 95 0 7 chr3 3800549 3800855 -223723723 - AluY SINE Alu -7 304 1 1092 216 124 63 chr3 3800855 3801177 -223723401 + MLT1H LTR MaLR 179 545 -4 1427 167 10 33 chr3 3801494 3801594 -223722984 - L1MA5 LINE L1 -107 6193 6092 2106 142 0 3 chr3 3801594 3801905 -223722673 + AluSx SINE Alu 3 312 0 1427 167 10 33 chr3 3801905 3802110 -223722468 - L1MA5 LINE L1 -208 6092 5895 619 193 29 0 chr3 3802093 3802233 -223722345 + L1 LINE L1 5065 5208 -938 * 1045 280 100 32 chr3 3802314 3802785 -223721793 + L2 LINE L2 2804 3306 -7 428 306 121 29 chr3 3802911 3803117 -223721461 - MIR SINE MIR -12 250 26 277 114 0 0 chr3 3803134 3803178 -223721400 + U5 snRNA snRNA 1 44 -72 1957 146 0 13 chr3 3803338 3803639 -223720939 - AluSx SINE Alu -15 297 1 309 284 32 0 chr3 3804244 3804339 -223720239 + L1MC4 LINE L1 6609 6706 -1336 240 211 0 0 chr3 3804339 3804396 -223720182 + (TA)n Simple_repeat Simple_repeat 2 58 0 271 145 0 65 chr3 3804447 3804509 -223720069 - Alu SINE Alu -3 298 241 500 43 29 0 chr3 3804571 3804641 -223719937 + (TCTA)n Simple_repeat Simple_repeat 2 73 0 271 366 54 71 chr3 3807149 3807499 -223717079 - L2 LINE L2 -22 3250 2907 404 313 162 14 chr3 3807499 3807850 -223716728 + L1ME4a LINE L1 5457 5859 -262 321 308 61 33 chr3 3807860 3808074 -223716504 + L1ME4a LINE L1 5899 6118 -3 186 143 0 0 chr3 3808812 3808847 -223715731 + (TA)n Simple_repeat Simple_repeat 2 36 0 258 105 0 0 chr3 3810435 3810473 -223714105 + (CA)n Simple_repeat Simple_repeat 1 38 0 259 260 27 0 chr3 3810610 3810683 -223713895 + MIR SINE MIR 178 252 -10 198 118 0 0 chr3 3810696 3810730 -223713848 + (ATG)n Simple_repeat Simple_repeat 2 35 0 409 333 16 38 chr3 3810911 3811097 -223713481 + MER5A DNA MER1_type 2 183 -6 206 181 0 56 chr3 3812757 3812829 -223711749 + T-rich Low_complexity Low_complexity 5 72 0 215 254 98 142 chr3 3813378 3813583 -223710995 - L3 LINE CR1 -204 1373 1178 475 146 171 8 chr3 3813637 3813760 -223710818 - L1MA9 LINE L1 -6 6306 6164 195 69 0 0 chr3 3813760 3813789 -223710789 + (TG)n Simple_repeat Simple_repeat 2 30 0 281 360 18 0 chr3 3814035 3814149 -223710429 - L2 LINE L2 -998 2316 2201 486 321 40 36 chr3 3814238 3814487 -223710091 + MER102a DNA MER1_type 81 330 0 1483 182 78 7 chr3 3814495 3814764 -223709814 + AluJb SINE Alu 1 288 -24 311 286 75 106 chr3 3814909 3815070 -223709508 - MIR3 SINE MIR -7 201 46 337 279 140 7 chr3 3817477 3817613 -223706965 + MIR SINE MIR 4 157 -105 1356 213 49 21 chr3 3817766 3818094 -223706484 + MER58B DNA MER1_type 4 340 -1 24 53 0 0 chr3 3820027 3820065 -223704513 + AT_rich Low_complexity Low_complexity 1 38 0 428 245 32 39 chr3 3820311 3820466 -223704112 - L1ME2 LINE L1 -10 6154 6001 378 222 25 12 chr3 3821373 3821454 -223703124 + L2 LINE L2 3226 3307 -6 1720 157 52 0 chr3 3821579 3821870 -223702708 + AluSx SINE Alu 1 305 0 446 331 43 27 chr3 3822348 3822605 -223701973 - L3 LINE CR1 -157 1420 1160 211 176 15 29 chr3 3823118 3823186 -223701392 + (TATG)n Simple_repeat Simple_repeat 3 69 0 1286 194 20 103 chr3 3823396 3823794 -223700784 + MLT1A1 LTR MaLR 1 365 0 423 331 24 24 chr3 3824530 3824699 -223699879 + MLT1K LTR MaLR 225 393 -195 1881 165 57 39 chr3 3824780 3825187 -223699391 - MLT2D LTR ERVL 0 414 1 2013 95 0 18 chr3 3825884 3826157 -223698421 + AluSq SINE Alu 31 298 -15 428 263 53 26 chr3 3827339 3827491 -223697087 - MIR3 SINE MIR -21 187 32 259 188 31 31 chr3 3828766 3828830 -223695748 - MIR3 SINE MIR -47 161 98 545 86 0 12 chr3 3828910 3828991 -223695587 - MADE1 DNA Mariner 0 80 1 284 258 61 30 chr3 3828992 3829124 -223695454 - LTR67 LTR ERVL -9 548 413 573 234 22 7 chr3 3830144 3830281 -223694297 - MIR SINE MIR -38 224 86 300 300 74 45 chr3 3830794 3831037 -223693541 + L1M4 LINE L1 2879 3128 -3018 2200 116 0 13 chr3 3831129 3831440 -223693138 + AluSx SINE Alu 1 307 -5 375 192 70 6 chr3 3831713 3831801 -223692777 - MER5A DNA MER1_type -1 188 86 189 196 0 0 chr3 3832125 3832171 -223692407 + (TA)n Simple_repeat Simple_repeat 2 47 0 2128 65 0 8 chr3 3832231 3832493 -223692085 + AluY SINE Alu 29 288 -23 721 138 3 20 chr3 3832549 3832896 -223691682 + (TA)n Simple_repeat Simple_repeat 1 341 0 307 203 72 0 chr3 3832899 3832968 -223691610 - L1MCa LINE L1 -4361 2065 1992 657 116 35 0 chr3 3832974 3833147 -223691431 + (TA)n Simple_repeat Simple_repeat 1 179 0 284 165 11 0 chr3 3833161 3833252 -223691326 + (TA)n Simple_repeat Simple_repeat 1 92 0 314 292 22 0 chr3 3833254 3833343 -223691235 + L1MC4 LINE L1 6613 6703 -1339 516 102 51 21 chr3 3833343 3833580 -223690998 + (TA)n Simple_repeat Simple_repeat 1 244 0 492 111 70 0 chr3 3833599 3833860 -223690718 + (TA)n Simple_repeat Simple_repeat 1 279 0 542 276 167 10 chr3 3834572 3834764 -223689814 + MIR SINE MIR 20 241 -21 201 74 0 0 chr3 3834770 3834797 -223689781 + (TG)n Simple_repeat Simple_repeat 2 28 0 1879 141 0 29 chr3 3834828 3835134 -223689444 + AluJb SINE Alu 12 308 -4 867 168 66 6 chr3 3835431 3835598 -223688980 - FRAM SINE Alu 0 176 1 369 0 0 0 chr3 3836527 3836568 -223688010 + (CA)n Simple_repeat Simple_repeat 1 41 0 726 237 23 6 chr3 3837100 3837273 -223687305 - MER5B DNA MER1_type -2 176 1 1901 138 47 0 chr3 3837431 3837729 -223686849 + AluSx SINE Alu 1 312 0 542 242 86 86 chr3 3838959 3839228 -223685350 - MER102b DNA MER1_type -3 338 70 1704 232 50 40 chr3 3840202 3840367 -223684211 - MER39 LTR ERV1 0 707 545 3502 189 104 23 chr3 3840367 3841164 -223683414 + MER21B LTR ERV1 1 862 -1 1704 232 50 40 chr3 3841164 3841512 -223683066 - MER39 LTR ERV1 -162 545 8 466 317 77 18 chr3 3841602 3841823 -223682755 + MIR SINE MIR 26 259 -3 337 286 58 94 chr3 3841916 3842140 -223682438 - MIR SINE MIR -15 247 32 848 199 6 0 chr3 3842539 3842700 -223681878 - FRAM SINE Alu -14 162 1 320 337 200 6 chr3 3843178 3843353 -223681225 + MIR SINE MIR 2 210 -52 1214 253 50 19 chr3 3843365 3843728 -223680850 - MLT1A2 LTR MaLR 0 374 1 1344 172 0 5 chr3 3843758 3843979 -223680599 - AluJb SINE Alu -7 305 86 252 320 0 0 chr3 3844147 3844225 -223680353 + MIR SINE MIR 146 223 -39 317 211 0 0 chr3 3844225 3844282 -223680296 - MLT1A1 LTR MaLR 0 365 309 3598 175 55 48 chr3 3844452 3844924 -223679654 - L1MB7 LINE L1 -54 6130 5649 2591 191 60 15 chr3 3844924 3845462 -223679116 + MER68 LTR ERV1 1 562 0 3598 175 55 48 chr3 3845462 3845907 -223678671 - L1MB7 LINE L1 -535 5649 5208 278 266 128 11 chr3 3846919 3847013 -223677565 + L2 LINE L2 3209 3313 0 2031 121 28 3 chr3 3847098 3847388 -223677190 - AluSx SINE Alu -15 297 1 1090 82 0 0 chr3 3847388 3847523 -223677055 - AluSq/x SINE Alu -177 135 1 579 246 175 6 chr3 3848561 3848732 -223675846 - MIR SINE MIR -26 236 37 2239 117 3 0 chr3 3848763 3849071 -223675507 - AluSx SINE Alu -3 309 1 216 167 0 0 chr3 3849365 3849401 -223675177 + (TG)n Simple_repeat Simple_repeat 1 36 0 903 306 77 31 chr3 3849426 3849589 -223674989 + L2 LINE L2 2903 3057 -256 1928 147 58 6 chr3 3849589 3849935 -223674643 + MLT1A1 LTR MaLR 1 364 -1 903 306 77 31 chr3 3849935 3850163 -223674415 + L2 LINE L2 3057 3312 -1 288 395 9 0 chr3 3850989 3851103 -223673475 + MIR SINE MIR 38 152 -56 1407 199 8 105 chr3 3851149 3851550 -223673028 - MLT1A1 LTR MaLR -1 364 3 244 268 42 92 chr3 3853073 3853215 -223671363 + MER5A DNA MER1_type 27 161 -28 958 291 86 35 chr3 3853721 3854126 -223670452 - MLT1K LTR MaLR -1 587 162 1426 162 62 16 chr3 3854497 3854805 -223669773 + L1MC2 LINE L1 6014 6335 -9 237 189 54 54 chr3 3854828 3854902 -223669676 + L2 LINE L2 3177 3250 -63 924 194 54 70 chr3 3854937 3855195 -223669383 - MER46C DNA MER2_type -5 333 80 2078 79 76 7 chr3 3857082 3857373 -223667205 + AluY SINE Alu 1 311 0 518 127 0 0 chr3 3857432 3857511 -223667067 + AluSg1 SINE Alu 1 79 -230 2523 49 0 0 chr3 3859566 3859870 -223664708 + AluY SINE Alu 7 310 -1 186 0 28 56 chr3 3860038 3860074 -223664504 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1945 207 15 67 chr3 3860182 3860400 -223664178 - L1 LINE L1 -904 5242 5014 1672 99 0 5 chr3 3860400 3860623 -223663955 - AluSg/x SINE Alu -18 294 73 1945 207 15 67 chr3 3860623 3861164 -223663414 - L1 LINE L1 -1132 5014 4562 1068 328 142 39 chr3 3861497 3862510 -223662068 - L3 LINE CR1 -66 1511 394 415 344 56 25 chr3 3862483 3862870 -223661708 + L2 LINE L2 2612 3104 -209 * 426 294 79 99 chr3 3863099 3863633 -223660945 - L2 LINE L2 -457 2857 2335 445 303 0 0 chr3 3863638 3863757 -223660821 + MER94 DNA DNA 16 134 0 422 279 146 84 chr3 3863772 3864368 -223660210 - L2 LINE L2 -1020 2294 1662 467 354 40 5 chr3 3864719 3864917 -223659661 - MIR SINE MIR -27 235 31 23 33 0 0 chr3 3866715 3866745 -223657833 + AT_rich Low_complexity Low_complexity 1 30 0 271 377 39 8 chr3 3868122 3868252 -223656326 + MIR3 SINE MIR 2 135 -73 901 220 10 0 chr3 3868258 3868458 -223656120 + MER3 DNA MER1_type 3 204 -5 1555 192 44 49 chr3 3869126 3869532 -223655046 - MER21B LTR ERV1 -57 806 403 384 278 61 0 chr3 3870016 3870131 -223654447 - MIR SINE MIR -59 203 82 2171 103 0 0 chr3 3871283 3871595 -223652983 + AluSg SINE Alu 1 312 0 559 200 42 18 chr3 3872062 3872227 -223652351 - MLT1A1 LTR MaLR -196 169 1 225 94 0 0 chr3 3873403 3873435 -223651143 + (CCA)n Simple_repeat Simple_repeat 1 32 0 183 80 0 0 chr3 3873655 3873680 -223650898 + (T)n Simple_repeat Simple_repeat 1 25 0 1716 167 0 33 chr3 3874062 3874367 -223650211 + AluJb SINE Alu 7 301 -11 674 306 51 4 chr3 3877914 3878149 -223646429 + MIR SINE MIR 9 254 -8 220 0 86 0 chr3 3878266 3878301 -223646277 + A-rich Low_complexity Low_complexity 2 39 0 1995 66 44 0 chr3 3878577 3878849 -223645729 - L1PA13 LINE L1 -19 6144 5861 2153 110 3 7 chr3 3878885 3879184 -223645394 + AluSx SINE Alu 1 298 -14 978 82 0 15 chr3 3879238 3879398 -223645180 + AluY SINE Alu 150 307 0 221 116 0 23 chr3 3881148 3881191 -223643387 + (TTCTCC)n Simple_repeat Simple_repeat 3 44 0 2490 46 7 0 chr3 3881205 3881512 -223643066 + AluY SINE Alu 1 309 -2 235 311 14 14 chr3 3881577 3881651 -223642927 + MIR SINE MIR 19 92 -116 210 343 126 40 chr3 3882852 3883050 -223641528 - L2 LINE L2 -509 2805 2591 2695 297 100 32 chr3 3883156 3884175 -223640403 + L2 LINE L2 1635 2769 -544 2148 154 83 8 chr3 3884175 3884572 -223640006 + MSTA LTR MaLR 2 428 0 2695 297 100 32 chr3 3884572 3884985 -223639593 + L2 LINE L2 2769 3153 -160 23 68 0 0 chr3 3885729 3885773 -223638805 + AT_rich Low_complexity Low_complexity 1 44 0 28 53 0 40 chr3 3886100 3886175 -223638403 + AT_rich Low_complexity Low_complexity 1 72 0 191 235 123 12 chr3 3886386 3886467 -223638111 - MIR SINE MIR -77 185 96 423 224 96 8 chr3 3886739 3886864 -223637714 - MER103 DNA DNA 0 166 31 1044 113 0 0 chr3 3886865 3887007 -223637571 + THE1C LTR MaLR 1 142 -233 1874 129 46 16 chr3 3888245 3888548 -223636030 - AluSx SINE Alu 0 312 1 568 234 22 7 chr3 3889396 3889533 -223635045 + MIR SINE MIR 86 224 -38 263 232 0 14 chr3 3890616 3890685 -223633893 + LTR67 LTR ERVL 481 548 -9 540 86 0 12 chr3 3890686 3890767 -223633811 + MADE1 DNA Mariner 1 80 0 262 188 31 31 chr3 3890847 3890911 -223633667 + MIR3 SINE MIR 98 161 -47 449 248 47 16 chr3 3891550 3891679 -223632899 - MER94 DNA DNA -1 133 1 2411 129 89 65 chr3 3892697 3892750 -223631828 + MER34 LTR ERV1 1 51 -491 1696 164 0 14 chr3 3892750 3893056 -223631522 - AluJo SINE Alu 0 302 1 2411 129 89 65 chr3 3893056 3893527 -223631051 + MER34 LTR ERV1 51 539 -3 349 293 67 7 chr3 3893570 3893720 -223630858 - L1ME3A LINE L1 -233 5920 5762 645 285 65 19 chr3 3893764 3894458 -223630120 - L1ME3A LINE L1 -536 5609 4884 522 278 109 24 chr3 3894571 3895218 -223629360 - L1MEd LINE L1 -4596 1714 971 314 363 64 58 chr3 3895293 3895670 -223628908 - L1MEd LINE L1 -5737 382 4 1990 146 0 0 chr3 3895750 3896044 -223628534 + AluSx SINE Alu 1 294 -18 565 196 0 0 chr3 3896047 3896139 -223628439 + AluS SINE Alu 1 92 -220 1500 120 43 0 chr3 3896240 3896488 -223628090 + AluSg/x SINE Alu 66 322 0 2288 91 3 0 chr3 3896498 3896783 -223627795 + AluSp SINE Alu 3 288 -25 226 0 59 0 chr3 3896792 3896826 -223627752 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 200 219 0 0 chr3 3897586 3897627 -223626951 - MER5C DNA MER1_type -6 318 278 323 224 37 112 chr3 3897772 3897906 -223626672 - MER5C DNA MER1_type -200 124 1 218 324 63 63 chr3 3898135 3898246 -223626332 + L2 LINE L2 3141 3251 -21 270 300 129 36 chr3 3898721 3898861 -223625717 + MIR3 SINE MIR 6 158 -50 1537 177 7 14 chr3 3898897 3899209 -223625369 + AluJo SINE Alu 1 310 0 2183 113 0 7 chr3 3899425 3899726 -223624852 + AluSg SINE Alu 1 299 -11 435 281 117 18 chr3 3900858 3901029 -223623549 + MER5A DNA MER1_type 1 188 -1 23 0 0 0 chr3 3902118 3902141 -223622437 + AT_rich Low_complexity Low_complexity 1 23 0 1712 122 90 41 chr3 3902818 3903161 -223621417 + MER46B DNA MER2_type 1 235 -1 305 279 108 18 chr3 3903182 3903293 -223621285 + MER5A DNA MER1_type 55 175 -14 1266 122 0 5 chr3 3903293 3903481 -223621097 - AluSg/x SINE Alu -10 302 116 356 258 139 40 chr3 3903584 3903735 -223620843 - MER21B LTR ERV1 -600 263 98 2261 121 16 0 chr3 3904024 3904330 -223620248 - AluSx SINE Alu -1 311 1 349 371 29 11 chr3 3905285 3905460 -223619118 + MIR3 SINE MIR 25 202 -6 576 228 168 0 chr3 3906920 3907069 -223617509 + MER5A DNA MER1_type 9 182 -7 197 301 12 60 chr3 3907138 3907221 -223617357 - MER5A DNA MER1_type -34 155 77 2045 119 16 10 chr3 3907250 3907560 -223617018 + AluSx SINE Alu 1 312 0 950 110 50 33 chr3 3907563 3907745 -223616833 + L1MA5 LINE L1 6108 6292 -8 25 0 0 0 chr3 3908110 3908135 -223616443 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 3908979 3909000 -223615578 + AT_rich Low_complexity Low_complexity 1 21 0 2194 104 3 7 chr3 3909014 3909303 -223615275 - AluSx SINE Alu -24 288 1 1620 178 16 48 chr3 3909440 3909563 -223615015 + AluJo SINE Alu 1 126 -186 2077 104 14 0 chr3 3909563 3909863 -223614715 - AluSx SINE Alu 0 304 1 1620 178 16 48 chr3 3909863 3910052 -223614526 + AluJo SINE Alu 126 304 -8 284 253 191 25 chr3 3910293 3910455 -223614123 - MIR SINE MIR -7 255 67 319 196 165 62 chr3 3910551 3910648 -223613930 + MER5B DNA MER1_type 67 173 -5 1669 97 9 0 chr3 3910933 3911149 -223613429 - AluSq SINE Alu -95 218 1 780 306 51 63 chr3 3912739 3913287 -223611291 + L2 LINE L2 2764 3303 -10 436 236 89 52 chr3 3915151 3915342 -223609236 - L2 LINE L2 -22 3291 3094 2335 66 3 7 chr3 3916166 3916470 -223608108 + AluY SINE Alu 5 307 -4 31 0 0 0 chr3 3916515 3916546 -223608032 + AT_rich Low_complexity Low_complexity 1 31 0 337 298 0 19 chr3 3916889 3916993 -223607585 - MIR SINE MIR -113 149 48 936 135 101 6 chr3 3918197 3918375 -223606203 + MLT1A1 LTR MaLR 170 364 -1 1052 226 73 20 chr3 3918399 3918786 -223605792 + MLT1C LTR MaLR 45 460 -7 1915 120 38 7 chr3 3920350 3920641 -223603937 - AluSx SINE Alu -12 300 1 2879 200 32 60 chr3 3920653 3920986 -223603592 - L1MB8 LINE L1 0 6178 5837 2292 75 34 0 chr3 3920986 3921278 -223603300 - AluSq SINE Alu -11 302 1 2879 200 32 60 chr3 3921278 3921520 -223603058 - L1MB8 LINE L1 -341 5837 5590 237 77 26 0 chr3 3921520 3921559 -223603019 + Alu SINE Alu 255 294 -7 2879 200 32 60 chr3 3921559 3922446 -223602132 - L1MB8 LINE L1 -588 5590 4726 261 325 0 0 chr3 3923126 3923203 -223601375 + MIR SINE MIR 84 160 -102 315 0 0 0 chr3 3923271 3923306 -223601272 + (TG)n Simple_repeat Simple_repeat 2 36 0 347 338 162 0 chr3 3923796 3923938 -223600640 - L2 LINE L2 -1 3271 3107 5594 91 20 5 chr3 3924047 3924770 -223599808 - L1PA13 LINE L1 -5 6158 5447 2352 81 0 13 chr3 3924770 3925077 -223599501 - AluY SINE Alu -8 303 1 5594 91 20 5 chr3 3925077 3925838 -223598740 - L1PA13 LINE L1 -716 5447 4631 457 332 150 31 chr3 3925922 3926341 -223598237 - L2 LINE L2 0 3313 2845 652 358 49 0 chr3 3926587 3926830 -223597748 - MIR SINE MIR -6 256 2 23 54 0 0 chr3 3927387 3927424 -223597154 + AT_rich Low_complexity Low_complexity 1 37 0 2695 112 2 10 chr3 3928168 3928586 -223595992 + L1PB1 LINE L1 5736 6150 -1 261 0 0 0 chr3 3929360 3929389 -223595189 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 225 326 112 0 chr3 3929596 3929694 -223594884 + L2 LINE L2 3156 3264 -8 443 280 26 53 chr3 3930614 3930803 -223593775 - MIR SINE MIR -50 212 29 2333 102 0 10 chr3 3931016 3931329 -223593249 + AluSg SINE Alu 1 310 0 1908 152 40 3 chr3 3932880 3933177 -223591401 - AluSx SINE Alu -4 308 1 499 286 17 28 chr3 3933227 3933405 -223591173 + L2 LINE L2 3133 3308 -5 855 189 11 194 chr3 3933491 3933953 -223590625 - LTR24 LTR ERV1 0 525 188 350 296 37 0 chr3 3934070 3934178 -223590400 + L2 LINE L2 3192 3303 -10 991 153 6 12 chr3 3934425 3934617 -223589961 - AluSq SINE Alu 0 313 123 2381 46 0 0 chr3 3935390 3935725 -223588853 + AluY SINE Alu 2 336 0 311 98 39 0 chr3 3936694 3936796 -223587782 - AluJb SINE Alu 0 331 228 1072 128 7 0 chr3 3936796 3936944 -223587634 - AluJb SINE Alu -152 160 12 465 320 53 44 chr3 3937006 3937231 -223587347 + MIR SINE MIR 13 239 -23 864 164 102 40 chr3 3937630 3937856 -223586722 - MER4B LTR ERV1 -370 240 1 459 0 0 0 chr3 3937995 3938046 -223586532 + (TG)n Simple_repeat Simple_repeat 2 52 0 238 225 42 133 chr3 3938477 3938532 -223586046 - MIR3 SINE MIR -32 176 136 1587 163 29 59 chr3 3938532 3938838 -223585740 + AluJb SINE Alu 7 303 -9 238 225 42 133 chr3 3938838 3938902 -223585676 - MIR3 SINE MIR -72 136 68 438 284 30 0 chr3 3939914 3940048 -223584530 - MIR SINE MIR -72 190 53 412 271 60 36 chr3 3940194 3940360 -223584218 + MIR SINE MIR 20 189 -73 225 0 0 0 chr3 3940644 3940669 -223583909 + (CA)n Simple_repeat Simple_repeat 2 26 0 207 0 0 0 chr3 3940676 3940699 -223583879 + (GA)n Simple_repeat Simple_repeat 2 24 0 1574 211 109 5 chr3 3940699 3941111 -223583467 - MLT2B1 LTR ERVL -65 455 1 1960 205 99 79 chr3 3941270 3942080 -223582498 + LTR1B LTR ERV1 1 826 0 2242 107 3 0 chr3 3942624 3942932 -223581646 + AluSx SINE Alu 1 309 -3 488 297 78 21 chr3 3943117 3943309 -223581269 + MIR SINE MIR 32 234 -28 2091 107 45 0 chr3 3943317 3943606 -223580972 - AluSx SINE Alu -10 302 1 281 259 0 0 chr3 3943681 3943735 -223580843 - MIR SINE MIR -3 259 206 370 305 76 8 chr3 3944678 3944809 -223579769 + MIR SINE MIR 8 147 -115 193 293 106 49 chr3 3945151 3945274 -223579304 - L3b LINE CR1 -30 1553 1424 1963 152 0 3 chr3 3946073 3946369 -223578209 + AluJb SINE Alu 1 295 -17 698 230 94 88 chr3 3946451 3946810 -223577768 - MLT1D LTR MaLR 0 467 124 697 58 58 19 chr3 3946810 3946914 -223577664 + L1PA10 LINE L1 6055 6162 -6 698 230 94 88 chr3 3946914 3947032 -223577546 - MLT1D LTR MaLR -343 124 8 266 322 148 0 chr3 3949378 3949493 -223575085 + MIR3 SINE MIR 46 177 -31 1148 224 28 6 chr3 3949512 3949802 -223574776 - MLT1A1 LTR MaLR -8 357 50 1449 97 4 18 chr3 3951221 3951448 -223573130 - MER4E LTR ERV1 -27 739 516 2508 56 3 0 chr3 3951448 3951754 -223572824 - AluY SINE Alu -4 307 1 1792 174 24 0 chr3 3952928 3953226 -223571352 - AluJo SINE Alu -5 307 3 2373 93 3 0 chr3 3953253 3953555 -223571023 + AluSq SINE Alu 3 305 -8 1899 156 34 6 chr3 3953859 3954217 -223570361 - L1PB4 LINE L1 0 6156 5789 238 167 0 28 chr3 3954228 3954300 -223570278 + (TA)n Simple_repeat Simple_repeat 1 70 0 363 23 0 0 chr3 3954301 3954345 -223570233 + (TCTA)n Simple_repeat Simple_repeat 2 45 0 2199 128 8 23 chr3 3954347 3954446 -223570132 - L1PB4 LINE L1 -378 5778 5679 1610 211 0 3 chr3 3954446 3954745 -223569833 - AluJb SINE Alu -14 298 1 2199 128 8 23 chr3 3954745 3955034 -223569544 - L1PB4 LINE L1 -477 5679 5396 942 281 88 38 chr3 3955354 3955951 -223568627 + L2 LINE L2 2702 3313 0 349 307 0 8 chr3 3956735 3956862 -223567716 + (TTA)n Simple_repeat Simple_repeat 3 128 0 2212 226 72 14 chr3 3956928 3957500 -223567078 - MER82 DNA MER2_type -48 605 1 228 306 38 12 chr3 3957543 3957703 -223566875 + L1ME2 LINE L1 4978 5141 -1005 495 286 97 49 chr3 3957806 3958291 -223566287 + L1ME2 LINE L1 5270 5793 -371 2279 89 3 7 chr3 3958291 3958595 -223565983 - AluSx SINE Alu -8 304 2 495 286 97 49 chr3 3958595 3958741 -223565837 + L1ME2 LINE L1 5793 5931 -233 297 0 0 0 chr3 3958801 3958834 -223565744 + (CA)n Simple_repeat Simple_repeat 1 33 0 797 258 18 35 chr3 3959080 3959309 -223565269 + MIR SINE MIR 32 256 -6 783 186 0 0 chr3 3959473 3959597 -223564981 - FLAM_A SINE Alu -9 124 1 2330 84 0 7 chr3 3959628 3959924 -223564654 + AluSq SINE Alu 1 294 -19 189 0 0 0 chr3 3961821 3961842 -223562736 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 276 77 0 0 chr3 3961841 3961880 -223562698 + (TG)n Simple_repeat Simple_repeat 2 40 0 1813 169 10 3 chr3 3962466 3962762 -223561816 - AluJo SINE Alu -10 302 5 290 296 148 7 chr3 3966194 3966336 -223558242 - L2 LINE L2 -191 3081 2920 23 0 0 0 chr3 3967339 3967362 -223557216 + AT_rich Low_complexity Low_complexity 1 23 0 2087 92 10 26 chr3 3967586 3967892 -223556686 + AluY SINE Alu 1 301 -10 2146 117 0 7 chr3 3968011 3968309 -223556269 + AluSx SINE Alu 1 296 -16 2406 59 0 3 chr3 3968626 3968931 -223555647 - AluY SINE Alu -6 305 2 1100 62 0 0 chr3 4069357 4069487 -223455091 + AluSg/x SINE Alu 171 300 -12 335 207 16 107 chr3 4069492 4069613 -223454965 - MIR SINE MIR -108 154 45 1429 159 96 7 chr3 4069613 4069884 -223454694 + AluJb SINE Alu 1 295 -17 338 363 55 31 chr3 4070879 4071204 -223453374 + LTR16C LTR ERVL 149 481 -10 566 283 11 11 chr3 4071228 4071412 -223453166 + Charlie7 DNA MER1_type 314 497 -2115 278 149 21 0 chr3 4071833 4071880 -223452698 - Charlie8 DNA MER1_type -1006 1411 1364 2135 123 3 0 chr3 4071952 4072252 -223452326 - AluSx SINE Alu -11 301 1 376 249 115 91 chr3 4072499 4072693 -223451885 + L1ME4a LINE L1 5631 5834 -287 1887 135 7 0 chr3 4072693 4072974 -223451604 - AluSg SINE Alu -15 295 13 376 249 115 91 chr3 4072974 4073032 -223451546 + L1ME4a LINE L1 5834 5889 -232 273 180 16 141 chr3 4073120 4073248 -223451330 - MLT1H LTR MaLR 0 549 438 1526 196 70 40 chr3 4073675 4073951 -223450627 + L1MC/D LINE L1 4789 5082 -1064 2267 110 0 10 chr3 4073951 4074260 -223450318 - AluSx SINE Alu -1 311 6 1526 196 70 40 chr3 4074260 4074385 -223450193 + L1MC/D LINE L1 5082 5202 -944 1038 209 60 18 chr3 4074385 4074667 -223449911 + AluSx SINE Alu 1 294 -8 431 236 183 21 chr3 4075022 4075213 -223449365 + L1MC/D LINE L1 5296 5517 -2291 1704 75 0 0 chr3 4075255 4075468 -223449110 - AluSg SINE Alu -97 213 1 257 109 455 0 chr3 4075919 4075974 -223448604 - MADE1 DNA Mariner 0 80 1 1838 149 35 0 chr3 4076363 4076479 -223448099 + AluSx SINE Alu 1 112 -200 414 0 0 0 chr3 4076479 4076525 -223448053 + (TAA)n Simple_repeat Simple_repeat 2 47 0 1838 149 35 0 chr3 4076525 4076696 -223447882 + AluSx SINE Alu 112 298 -14 865 233 106 24 chr3 4077025 4077317 -223447261 - L2 LINE L2 -429 2885 2570 1804 161 7 20 chr3 4077346 4077644 -223446934 + AluJb SINE Alu 1 294 -18 207 0 0 0 chr3 4077647 4077670 -223446908 + (TA)n Simple_repeat Simple_repeat 2 24 0 224 338 13 0 chr3 4078813 4078890 -223445688 - MIR SINE MIR -63 145 68 421 243 59 44 chr3 4079977 4080113 -223444465 - MIR3 SINE MIR -23 185 48 22 0 0 0 chr3 4080214 4080236 -223444342 + AT_rich Low_complexity Low_complexity 1 22 0 2030 63 0 0 chr3 4080521 4080760 -223443818 + AluY SINE Alu 72 310 -1 2002 94 91 0 chr3 4080766 4081041 -223443537 + AluSg SINE Alu 1 300 -10 24 0 0 0 chr3 4081502 4081526 -223443052 + AT_rich Low_complexity Low_complexity 1 24 0 285 293 113 7 chr3 4081532 4081682 -223442896 - L1ME4a LINE L1 0 6121 5956 448 246 36 27 chr3 4081944 4082054 -223442524 - AluSp SINE Alu -104 209 99 1205 222 122 47 chr3 4082054 4082502 -223442076 + L1M4 LINE L1 3051 3464 -2682 2152 113 0 0 chr3 4082502 4082810 -223441768 - AluSx SINE Alu 0 308 1 2219 106 0 0 chr3 4082816 4083130 -223441448 - AluSx SINE Alu 0 314 1 1205 222 122 47 chr3 4083130 4083245 -223441333 + L1M4 LINE L1 3468 3666 -2480 669 228 39 22 chr3 4085043 4085223 -223439355 + MER3 DNA MER1_type 1 183 -26 276 289 75 54 chr3 4085434 4085673 -223438905 + L2 LINE L2 2734 2977 -337 2399 58 0 3 chr3 4085742 4086034 -223438544 + AluY SINE Alu 1 291 -20 647 230 15 0 chr3 4087102 4087237 -223437341 + MER3 DNA MER1_type 2 138 -71 2137 129 0 19 chr3 4087243 4087554 -223437024 + AluSg SINE Alu 1 305 -5 202 358 0 0 chr3 4087823 4087890 -223436688 - L2 LINE L2 -1 3271 3205 311 327 58 13 chr3 4088027 4088183 -223436395 - MIR SINE MIR -88 174 12 213 121 0 0 chr3 4088224 4088257 -223436321 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 552 188 240 19 chr3 4088435 4088589 -223435989 - MER53 DNA DNA 0 189 2 2330 98 7 0 chr3 4088849 4089156 -223435422 - AluSp SINE Alu -4 309 1 325 246 144 8 chr3 4089426 4089544 -223435034 - L2 LINE L2 -10 3303 3170 2358 64 3 0 chr3 4090696 4090993 -223433585 - AluY SINE Alu -13 298 1 270 56 0 0 chr3 4091907 4091943 -223432635 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 221 222 79 32 chr3 4092250 4092313 -223432265 + MIR3 SINE MIR 129 194 -14 225 0 0 0 chr3 4092372 4092397 -223432181 + (TG)n Simple_repeat Simple_repeat 2 26 0 2034 121 0 0 chr3 4092402 4092684 -223431894 - AluSx SINE Alu -30 282 1 1920 122 15 0 chr3 4094945 4095216 -223429362 - AluSx SINE Alu -24 288 14 874 153 127 0 chr3 4095266 4095416 -223429162 + MER6B DNA MER2_type 37 205 -5 1818 192 68 21 chr3 4095699 4096127 -223428451 - MLT1C LTR MaLR -2 465 18 2156 125 0 3 chr3 4096356 4096660 -223427918 - AluSx SINE Alu -9 303 1 1152 149 123 0 chr3 4096951 4097146 -223427432 + MER20 DNA MER1_type 1 219 0 2227 103 7 0 chr3 4097586 4097886 -223426692 - AluSp SINE Alu -11 302 1 276 87 0 43 chr3 4098498 4098544 -223426034 - L2 LINE L2 -75 3238 3195 2009 138 6 6 chr3 4099379 4099691 -223424887 - AluSx SINE Alu 0 312 1 2139 95 18 7 chr3 4100004 4100307 -223424271 - AluSq SINE Alu 0 306 1 492 307 81 45 chr3 4101586 4101918 -223422660 - L2 LINE L2 -18 3295 2952 690 120 88 16 chr3 4101969 4102094 -223422484 + MER46A DNA MER2_type 103 236 0 2183 43 64 25 chr3 4102115 4102396 -223422182 + AluY SINE Alu 2 293 -18 854 192 48 12 chr3 4102674 4102841 -223421737 + L1MC4 LINE L1 6725 6897 -1145 10094 38 27 87 chr3 4102979 4104436 -223420142 + SVA Other Other 52 1595 -470 2028 151 0 3 chr3 4104436 4104748 -223419830 + AluSq SINE Alu 1 311 -2 2311 113 0 0 chr3 4104750 4105061 -223419517 + AluSx SINE Alu 1 311 -1 10094 38 27 87 chr3 4105061 4105078 -223419500 + SVA Other Other 1596 2065 0 893 81 16 0 chr3 4105081 4105204 -223419374 + FLAM_C SINE Alu 1 125 -18 1564 199 28 0 chr3 4105215 4105497 -223419081 - MER63B DNA MER1_type -146 290 1 22 0 0 0 chr3 4105528 4105550 -223419028 + AT_rich Low_complexity Low_complexity 1 22 0 1898 162 0 9 chr3 4105675 4105990 -223418588 - AluSx SINE Alu 0 312 1 697 233 43 0 chr3 4105995 4106158 -223418420 + MIR SINE MIR 61 230 -32 1382 144 0 19 chr3 4106160 4106375 -223418203 + AluSx SINE Alu 3 213 -99 31 0 0 0 chr3 4106865 4106896 -223417682 + AT_rich Low_complexity Low_complexity 1 31 0 1761 86 9 0 chr3 4106896 4107129 -223417449 - L1MA2 LINE L1 0 6304 6070 1916 144 0 34 chr3 4107218 4107538 -223417040 - AluJo SINE Alu -3 309 1 21 0 0 0 chr3 4108923 4108944 -223415634 + AT_rich Low_complexity Low_complexity 1 21 0 2392 71 7 3 chr3 4109606 4109902 -223414676 - AluSq SINE Alu -16 297 1 482 212 157 47 chr3 4110817 4111020 -223413558 + MIR SINE MIR 17 237 -25 2026 131 10 0 chr3 4111065 4111356 -223413222 + AluSx SINE Alu 1 294 -18 231 235 39 0 chr3 4111421 4111472 -223413106 + L1MC/D LINE L1 5451 5503 -2305 600 210 50 0 chr3 4111480 4111599 -223412979 + FAM SINE Alu 35 159 -26 841 189 211 32 chr3 4111680 4112078 -223412500 - LTR54B LTR ERV1 0 510 2 2025 124 14 0 chr3 4112091 4112382 -223412196 + AluSx SINE Alu 2 296 -16 2141 86 41 3 chr3 4112939 4113229 -223411349 + AluY SINE Alu 1 301 -10 371 266 107 35 chr3 4113625 4113794 -223410784 - MIR3 SINE MIR -6 202 22 22 35 0 0 chr3 4116439 4116468 -223408110 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr3 4117797 4117818 -223406760 + (A)n Simple_repeat Simple_repeat 1 21 0 769 144 23 0 chr3 4118518 4118650 -223405928 - L1MA7 LINE L1 -2 6289 6155 2263 105 0 0 chr3 4118713 4119009 -223405569 + AluSx SINE Alu 1 296 -16 554 273 126 25 chr3 4119269 4119507 -223405071 - MIR SINE MIR 0 262 1 1600 158 3 44 chr3 4119785 4120082 -223404496 + AluJo SINE Alu 18 302 -10 910 118 7 29 chr3 4120140 4120276 -223404302 + FLAM_C SINE Alu 1 133 0 1978 118 21 3 chr3 4120378 4120666 -223403912 + AluSx SINE Alu 1 293 -19 268 152 30 0 chr3 4122417 4122483 -223402095 + (TTCA)n Simple_repeat Simple_repeat 3 70 0 1278 228 59 62 chr3 4122592 4122901 -223401677 - MER49 LTR ERV1 0 923 614 2062 139 3 10 chr3 4122901 4123211 -223401367 + AluSx SINE Alu 1 308 -4 1278 228 59 62 chr3 4123211 4123305 -223401273 - MER49 LTR ERV1 -309 614 521 1061 86 0 7 chr3 4123307 4123446 -223401132 + AluYb8 SINE Alu 1 138 -180 2340 106 3 0 chr3 4123448 4123759 -223400819 + AluSx SINE Alu 1 312 0 1128 128 32 23 chr3 4123760 4124100 -223400478 - MER49 LTR ERV1 -389 534 152 2675 36 0 3 chr3 4124100 4124406 -223400172 - AluY SINE Alu -2 309 5 186 310 0 69 chr3 4124502 4124589 -223399989 + MIR SINE MIR 33 113 -149 22 0 0 0 chr3 4124641 4124663 -223399915 + AT_rich Low_complexity Low_complexity 1 22 0 1223 91 32 43 chr3 4125182 4125368 -223399210 - AluSc SINE Alu -125 184 1 309 245 96 11 chr3 4125650 4125744 -223398834 - MER69 DNA AcHobo 0 2526 2425 927 209 90 0 chr3 4125744 4125945 -223398633 + L1MD2 LINE L1 5944 6162 -197 1080 230 0 30 chr3 4125945 4126180 -223398398 + AluSq SINE Alu 1 228 -85 352 173 0 0 chr3 4126283 4126335 -223398243 - Alu SINE Alu -250 52 1 1875 115 6 74 chr3 4126343 4126509 -223398069 - AluSx SINE Alu -21 291 154 2412 79 0 0 chr3 4126509 4126801 -223397777 - AluSg SINE Alu -5 305 14 1875 115 6 74 chr3 4126801 4126946 -223397632 - AluSx SINE Alu -158 154 1 334 191 32 0 chr3 4126950 4127013 -223397565 + MER97b DNA MER1_type? 113 177 -876 861 212 4 100 chr3 4127132 4127373 -223397205 + MER20 DNA MER1_type 2 219 0 285 318 171 0 chr3 4127594 4127764 -223396814 - MIR SINE MIR -12 250 52 771 174 0 14 chr3 4127830 4127968 -223396610 + AluJ SINE Alu 2 137 -175 1075 146 6 0 chr3 4128019 4128190 -223396388 + AluJ SINE Alu 141 312 0 2054 119 24 10 chr3 4128486 4128781 -223395797 - AluSx SINE Alu -13 299 1 1804 171 4 4 chr3 4129021 4129302 -223395276 + AluJb SINE Alu 1 281 -31 22 0 0 0 chr3 4129351 4129373 -223395205 + AT_rich Low_complexity Low_complexity 1 22 0 1326 181 115 0 chr3 4129374 4129662 -223394916 + L1MC2 LINE L1 6002 6322 -22 1020 145 0 13 chr3 4129669 4129847 -223394731 - AluSg/x SINE Alu 0 307 132 2407 104 0 0 chr3 4129847 4130156 -223394422 - AluSx SINE Alu -3 309 1 1817 157 13 53 chr3 4130167 4130485 -223394093 - AluSx SINE Alu -7 305 1 406 257 40 5 chr3 4130583 4130707 -223393871 - MIR3 SINE MIR -21 187 59 2044 125 3 27 chr3 4130708 4131005 -223393573 - AluSx SINE Alu -22 290 1 687 172 0 16 chr3 4131214 4131336 -223393242 + FRAM SINE Alu 57 176 0 1937 131 52 3 chr3 4131341 4131631 -223392947 + AluSx SINE Alu 1 304 -8 2198 100 0 0 chr3 4132080 4132359 -223392219 + AluY SINE Alu 1 279 -32 180 0 0 0 chr3 4132361 4132381 -223392197 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 234 213 82 16 chr3 4132448 4132509 -223392069 + LTR8 LTR ERV1 238 302 -389 400 115 0 16 chr3 4132944 4133005 -223391573 + AluS SINE Alu 2 61 -257 2277 97 0 3 chr3 4134598 4134887 -223389691 - AluSx SINE Alu -24 288 1 185 0 0 39 chr3 4135046 4135072 -223389506 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2200 111 0 7 chr3 4135176 4135473 -223389105 - AluSq SINE Alu -18 295 1 375 229 99 15 chr3 4135858 4135989 -223388589 - LTR16A1 LTR ERVL -3 454 313 258 333 11 0 chr3 4136591 4136681 -223387897 + MLT1F1 LTR MaLR 5 95 -498 970 251 127 39 chr3 4136803 4137080 -223387498 + MLT1F1 LTR MaLR 104 415 -152 1672 122 80 0 chr3 4137080 4137317 -223387261 - AluSx SINE Alu -13 299 44 970 251 127 39 chr3 4137317 4137484 -223387094 + MLT1F1 LTR MaLR 415 566 -1 304 269 172 27 chr3 4137517 4137703 -223386875 - L1ME4a LINE L1 -227 5894 5682 2699 40 0 0 chr3 4137711 4138013 -223386565 + AluYb8 SINE Alu 1 302 -16 1269 96 0 0 chr3 4138013 4138179 -223386399 + AluYa5 SINE Alu 133 298 -13 2079 154 0 0 chr3 4138205 4138504 -223386074 + AluSx SINE Alu 1 299 -13 726 254 11 0 chr3 4138764 4138941 -223385637 - MER5A DNA MER1_type -8 181 3 287 263 25 12 chr3 4139314 4139394 -223385184 + MLT1K LTR MaLR 477 557 -31 239 200 38 113 chr3 4140221 4140301 -223384277 - L2 LINE L2 -40 3273 3200 318 26 0 0 chr3 4140306 4140345 -223384233 + (GA)n Simple_repeat Simple_repeat 2 40 0 937 238 75 77 chr3 4140402 4140855 -223383723 + MER110A LTR ERV1 3 454 -14 459 0 0 0 chr3 4140973 4141024 -223383554 + (TATG)n Simple_repeat Simple_repeat 2 52 0 2162 99 3 11 chr3 4141027 4141310 -223383268 - AluSx SINE Alu -30 282 2 503 81 0 0 chr3 4141319 4141393 -223383185 - Alu SINE Alu -10 301 228 425 175 0 25 chr3 4141394 4141474 -223383104 + MER65A LTR ERV1 35 112 -333 960 211 10 10 chr3 4141621 4141825 -223382753 - AluSx SINE Alu -108 204 1 2485 89 2 63 chr3 4141827 4142286 -223382292 - MER4A LTR ERV1 -271 393 1 2078 121 28 0 chr3 4143417 4143706 -223380872 - AluSx SINE Alu -13 299 3 271 268 97 48 chr3 4143834 4144103 -223380475 - L1ME4a LINE L1 -73 6048 5767 24 32 0 0 chr3 4144344 4144375 -223380203 + AT_rich Low_complexity Low_complexity 1 31 0 1135 138 29 0 chr3 4144375 4144549 -223380029 - AluJb SINE Alu -13 299 121 1503 181 42 21 chr3 4144639 4144926 -223379652 - AluJo SINE Alu -19 293 1 262 180 67 90 chr3 4147095 4147184 -223377394 - L1MC5 LINE L1 -44 7917 7831 1694 189 7 3 chr3 4147206 4147508 -223377070 - AluJb SINE Alu -9 303 1 21 57 0 0 chr3 4147703 4147738 -223376840 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 4147814 4147837 -223376741 + AT_rich Low_complexity Low_complexity 1 23 0 1796 158 0 55 chr3 4147838 4148168 -223376410 - AluJb SINE Alu 0 312 1 225 296 25 12 chr3 4148190 4148271 -223376307 - L1ME4a LINE L1 -463 5658 5577 1631 213 81 31 chr3 4148875 4149408 -223375170 - MLT1F1 LTR MaLR 0 567 2 2361 100 0 0 chr3 4149684 4149983 -223374595 - AluSg SINE Alu -11 299 1 2162 120 0 3 chr3 4150976 4151285 -223373293 - AluSx SINE Alu -4 308 1 354 23 0 0 chr3 4152356 4152399 -223372179 + (CA)n Simple_repeat Simple_repeat 1 43 0 965 160 209 13 chr3 4152402 4152627 -223371951 + L1MB3 LINE L1 5914 6182 -1 21 71 0 0 chr3 4152712 4152754 -223371824 + AT_rich Low_complexity Low_complexity 1 42 0 1476 186 13 68 chr3 4153329 4153636 -223370942 + AluJb SINE Alu 1 290 -22 476 264 21 7 chr3 4153969 4154109 -223370469 - MIR SINE MIR -48 214 73 1090 101 0 0 chr3 4154167 4154315 -223370263 - Tigger7 DNA MER2_type -1 2486 2339 344 171 100 0 chr3 4154334 4154404 -223370174 - Tigger7 DNA MER2_type -473 77 1 368 259 168 0 chr3 4154601 4154744 -223369834 + MIR3 SINE MIR 38 204 -4 1998 104 45 3 chr3 4155062 4155351 -223369227 + AluSx SINE Alu 1 301 -11 2300 105 0 0 chr3 4155362 4155657 -223368921 + AluSc SINE Alu 1 295 -14 1650 235 92 74 chr3 4156490 4157283 -223367295 + L1MC4 LINE L1 7235 8041 -1 1218 162 43 43 chr3 4157480 4157715 -223366863 - MER8 DNA MER2_type -1 238 4 2242 98 0 7 chr3 4157817 4158112 -223366466 - AluSx SINE Alu -18 294 2 1247 170 42 55 chr3 4158351 4158413 -223366165 + L1PA16 LINE L1 5875 5936 -230 2156 127 3 0 chr3 4158413 4158712 -223365866 + AluSx SINE Alu 1 300 -12 1247 170 42 55 chr3 4158712 4158938 -223365640 + L1PA16 LINE L1 5936 6159 -7 196 282 0 0 chr3 4159984 4160023 -223364555 + MIR SINE MIR 37 75 -133 1200 186 53 56 chr3 4160506 4160791 -223363787 + AluJo SINE Alu 6 289 -23 214 274 0 3 chr3 4161727 4161797 -223362781 - MIR SINE MIR -80 128 59 282 196 0 0 chr3 4161798 4161844 -223362734 - Alu SINE Alu -12 289 244 2503 90 3 0 chr3 4162089 4162400 -223362178 - AluSp SINE Alu 0 313 2 1183 152 11 11 chr3 4162400 4162583 -223361995 - AluJb SINE Alu -5 307 122 293 128 0 21 chr3 4162584 4162631 -223361947 + AluSp SINE Alu 117 162 -141 817 96 0 0 chr3 4162635 4162739 -223361839 - AluJb SINE Alu -202 110 7 622 315 17 9 chr3 4163089 4163321 -223361257 + MIR SINE MIR 12 245 -17 278 363 18 33 chr3 4163379 4163439 -223361139 + L1MDa LINE L1 49 108 -6432 1970 132 3 32 chr3 4163439 4163749 -223360829 + AluSx SINE Alu 1 301 -11 278 363 18 33 chr3 4163749 4163961 -223360617 + L1MDa LINE L1 108 317 -6223 239 327 18 30 chr3 4164512 4164680 -223359898 + L1MDa LINE L1 854 1019 -5511 1072 113 0 92 chr3 4164816 4165001 -223359577 + AluSx SINE Alu 1 168 -144 2119 118 3 37 chr3 4165006 4165329 -223359249 + AluSx SINE Alu 1 312 0 4816 156 35 41 chr3 4165332 4165519 -223359059 + L1M4c LINE L1 721 908 -5476 1968 154 0 0 chr3 4165519 4165812 -223358766 + AluSx SINE Alu 1 293 -19 4816 156 35 41 chr3 4165812 4166687 -223357891 + L1M4c LINE L1 908 1776 -4608 1680 127 0 80 chr3 4166687 4166986 -223357592 + AluSx SINE Alu 1 275 -37 870 143 63 11 chr3 4166988 4167163 -223357415 + L1MB3 LINE L1 5949 6132 -51 1390 134 5 9 chr3 4167168 4167384 -223357194 + AluSg/x SINE Alu 82 296 -16 2095 202 95 97 chr3 4167413 4168145 -223356433 + L1MDa LINE L1 1469 2201 -4339 2099 146 25 22 chr3 4168145 4168507 -223356071 - THE1B LTR MaLR -1 363 1 2095 202 95 97 chr3 4168507 4168941 -223355637 + L1MDa LINE L1 2201 2634 -3906 1583 187 4 4 chr3 4168941 4169209 -223355369 + AluJo SINE Alu 6 273 -39 2095 202 95 97 chr3 4169209 4169714 -223354864 + L1MDa LINE L1 2634 3139 -3401 1201 199 65 43 chr3 4169714 4169991 -223354587 + AluJb SINE Alu 3 285 -17 2095 202 95 97 chr3 4169991 4170272 -223354306 + L1MDa LINE L1 3139 3419 -3121 277 118 0 0 chr3 4170372 4170423 -223354155 + MER39B LTR ERV1 62 112 -541 583 340 20 8 chr3 4171127 4171377 -223353201 + HERVI LTR ERV1 718 970 -6815 5328 308 45 45 chr3 4171603 4172564 -223352014 + HERVI LTR ERV1 954 1914 -5871 2938 86 43 5 chr3 4172564 4172985 -223351593 + L1PA5 LINE L1 5717 6153 -1 5328 308 45 45 chr3 4172985 4176431 -223348147 + HERVI LTR ERV1 1914 5756 -2029 2179 304 39 43 chr3 4177323 4178551 -223346027 + HERVI LTR ERV1 6425 7647 -138 2290 136 5 35 chr3 4179458 4179833 -223344745 - THE1B LTR MaLR 0 364 1 685 83 0 0 chr3 4179929 4180025 -223344553 + AluY SINE Alu 208 303 -8 26 0 0 0 chr3 4180914 4180940 -223343638 + AT_rich Low_complexity Low_complexity 1 26 0 281 210 155 81 chr3 4181508 4181645 -223342933 - MIR SINE MIR -62 146 2 799 160 23 0 chr3 4182121 4182252 -223342326 + AluJo SINE Alu 2 135 -177 2155 115 3 10 chr3 4182270 4182584 -223341994 + AluSx SINE Alu 1 312 0 320 317 254 5 chr3 4182748 4182953 -223341625 - MIR SINE MIR -6 256 1 389 146 0 0 chr3 4183798 4183853 -223340725 + AluSg/x SINE Alu 194 248 -52 808 165 61 91 chr3 4183853 4183893 -223340685 + AluSg/x SINE Alu 83 123 -187 210 37 0 0 chr3 4183893 4183920 -223340658 + (TAA)n Simple_repeat Simple_repeat 3 29 0 1969 112 0 3 chr3 4183920 4184251 -223340327 + AluSx SINE Alu 1 330 0 2151 101 0 0 chr3 4184251 4184538 -223340040 + AluSg SINE Alu 1 287 -23 808 165 61 91 chr3 4184538 4184724 -223339854 + AluSg/x SINE Alu 120 305 -5 1891 139 0 3 chr3 4184859 4185153 -223339425 + AluSx SINE Alu 1 293 -19 1319 164 21 52 chr3 4186073 4186360 -223338218 - AluJb SINE Alu -30 282 5 335 328 156 16 chr3 4186887 4187015 -223337563 + L2 LINE L2 3126 3271 -1 189 0 0 0 chr3 4187297 4187318 -223337260 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 276 256 61 12 chr3 4187319 4187401 -223337177 - L2 LINE L2 -18 3295 3210 1913 83 65 7 chr3 4187469 4187746 -223336832 + AluSx SINE Alu 1 293 -19 1502 181 13 24 chr3 4187834 4188132 -223336446 + AluJo SINE Alu 14 308 -4 2333 81 0 0 chr3 4188317 4188613 -223335965 + AluSx SINE Alu 1 296 -16 1754 106 124 4 chr3 4188803 4189078 -223335500 + AluSg SINE Alu 1 308 -2 1477 145 67 32 chr3 4189191 4189474 -223335104 + AluSx SINE Alu 1 293 -19 787 154 0 8 chr3 4189684 4189814 -223334764 + AluJ SINE Alu 1 129 -173 2065 140 0 0 chr3 4189845 4190152 -223334426 + AluSx SINE Alu 1 307 -5 420 188 0 59 chr3 4190183 4190284 -223334294 - AluJ/FLAM SINE Alu -216 96 2 859 184 0 36 chr3 4190302 4190470 -223334108 + AluJ SINE Alu 129 290 -22 1177 130 0 0 chr3 4190678 4190855 -223333723 + AluSq SINE Alu 133 309 -4 303 171 239 34 chr3 4190872 4190989 -223333589 + L1ME LINE L1 5538 5678 -443 662 134 0 25 chr3 4191207 4191326 -223333252 - AluSq/x SINE Alu -196 117 2 21 0 0 0 chr3 4191586 4191607 -223332971 + AT_rich Low_complexity Low_complexity 1 21 0 1692 157 7 20 chr3 4192534 4192834 -223331744 + AluSx SINE Alu 1 296 -16 382 296 53 59 chr3 4193533 4193702 -223330876 + MER5A DNA MER1_type 22 189 0 1682 150 10 20 chr3 4194012 4194145 -223330433 + AluJo SINE Alu 1 134 -178 2045 106 0 64 chr3 4194145 4194475 -223330103 + AluSg SINE Alu 1 309 -1 1682 150 10 20 chr3 4194475 4194634 -223329944 + AluJo SINE Alu 134 290 -22 22 0 0 0 chr3 4195436 4195458 -223329120 + AT_rich Low_complexity Low_complexity 1 22 0 427 193 23 23 chr3 4195570 4195658 -223328920 + L2 LINE L2 3221 3308 -5 1776 136 52 0 chr3 4195737 4196024 -223328554 + AluJb SINE Alu 1 302 -10 1217 111 0 0 chr3 4196114 4196285 -223328293 + AluSp SINE Alu 132 302 -11 187 111 0 0 chr3 4196845 4196872 -223327706 - L2 LINE L2 -19 3294 3268 224 339 58 35 chr3 4197161 4197239 -223327339 + MIR SINE MIR 88 163 -99 1939 121 0 7 chr3 4197239 4197520 -223327058 + AluSg SINE Alu 1 279 -31 224 339 58 35 chr3 4197520 4197612 -223326966 + MIR SINE MIR 163 262 0 1229 134 113 79 chr3 4197812 4198104 -223326474 + AluJo SINE Alu 1 302 0 1536 110 4 25 chr3 4198116 4198361 -223326217 + AluSq SINE Alu 67 306 -7 242 303 121 0 chr3 4199090 4199189 -223325389 - L2 LINE L2 -1 3271 3161 1211 158 63 60 chr3 4199605 4199890 -223324688 + AluJo SINE Alu 23 308 -4 677 159 0 90 chr3 4200369 4200403 -223324175 - MER94 DNA DNA -1 133 98 2091 110 3 13 chr3 4200403 4200702 -223323876 - AluSx SINE Alu -16 296 1 677 159 0 90 chr3 4200702 4200812 -223323766 - MER94 DNA DNA -36 98 2 2198 157 60 35 chr3 4200851 4201303 -223323275 + MLT1C LTR MaLR 5 467 0 2339 107 22 19 chr3 4201426 4201792 -223322786 - L1PA16 LINE L1 0 6166 5800 2067 118 10 0 chr3 4201793 4202089 -223322489 - AluSq SINE Alu -14 299 1 2132 129 0 0 chr3 4202662 4202973 -223321605 + AluSx SINE Alu 1 311 -1 1989 135 0 3 chr3 4203162 4203466 -223321112 + AluSq SINE Alu 1 303 -10 2050 119 14 0 chr3 4203470 4203764 -223320814 + AluSx SINE Alu 1 298 -14 1789 127 3 67 chr3 4204349 4204664 -223319914 + AluSp SINE Alu 1 295 -18 1989 130 13 0 chr3 4204719 4205018 -223319560 + AluSg SINE Alu 1 303 -7 2496 135 46 14 chr3 4205511 4205911 -223318667 - MER65A LTR ERV1 0 445 29 1905 126 0 0 chr3 4205911 4206182 -223318396 - AluSx SINE Alu -41 271 1 2496 135 46 14 chr3 4206182 4206212 -223318366 - MER65A LTR ERV1 -416 29 1 770 170 7 22 chr3 4206247 4206382 -223318196 - FLAM_C SINE Alu 0 133 1 213 227 0 30 chr3 4206460 4206526 -223318052 + GA-rich Low_complexity Low_complexity 4 67 0 343 263 32 0 chr3 4206536 4206631 -223317947 + MER97c DNA MER1_type? 27 124 -966 242 140 0 20 chr3 4206658 4206708 -223317870 + (TCC)n Simple_repeat Simple_repeat 1 49 0 269 361 28 24 chr3 4207498 4207711 -223316867 - AluJo SINE Alu -57 245 32 * 836 155 39 19 chr3 4207706 4207861 -223316717 - MLT1D LTR MaLR -19 486 329 240 188 277 0 chr3 4207927 4208028 -223316550 + MER77 LTR ERV1 144 272 -333 2339 152 6 0 chr3 4208028 4208364 -223316214 + MER1B DNA MER1_type 1 338 -1 180 0 0 0 chr3 4208372 4208392 -223316186 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 730 292 142 14 chr3 4208393 4208674 -223315904 + MER77 LTR ERV1 278 594 -11 476 207 122 49 chr3 4208791 4208955 -223315623 + MIR SINE MIR 70 245 -17 402 216 43 126 chr3 4208955 4209105 -223315473 + MER106A DNA MER1_type 1 123 -113 691 228 0 0 chr3 4209105 4209228 -223315350 + FLAM_A SINE Alu 1 123 -10 402 216 43 126 chr3 4209228 4209332 -223315246 + MER106A DNA MER1_type 123 234 -2 798 267 89 71 chr3 4210370 4210435 -223314143 - MLT1K LTR MaLR -63 525 463 3517 128 4 28 chr3 4210435 4210975 -223313603 - MER1A DNA MER1_type 0 527 1 798 267 89 71 chr3 4210975 4211302 -223313276 - MLT1K LTR MaLR -125 463 126 261 225 0 0 chr3 4211520 4211609 -223312969 + (TTTA)n Simple_repeat Simple_repeat 2 90 0 292 225 113 0 chr3 4211624 4211695 -223312883 + L2 LINE L2 3194 3272 0 2654 123 31 2 chr3 4211712 4212128 -223312450 - MSTA LTR MaLR 0 428 1 520 171 202 0 chr3 4212368 4212497 -223312081 - MER5A DNA MER1_type -29 160 6 479 233 133 13 chr3 4213017 4213167 -223311411 - MIR SINE MIR -74 188 21 911 176 23 0 chr3 4213621 4213797 -223310781 - FRAM SINE Alu -1 175 1 2087 107 7 3 chr3 4213988 4214279 -223310299 + AluSq SINE Alu 1 292 -21 1211 140 45 0 chr3 4214427 4214627 -223309951 - L1MA5A LINE L1 -4 6293 6085 2634 80 33 145 chr3 4214902 4215161 -223309417 + MER39B LTR ERV1 1 287 -366 930 113 0 0 chr3 4215161 4215285 -223309293 + FLAM_C SINE Alu 1 124 -9 2634 80 33 145 chr3 4215285 4215330 -223309248 + MER39B LTR ERV1 287 335 -318 773 191 8 0 chr3 4215330 4215487 -223309091 + FLAM_C SINE Alu 1 158 0 2634 80 33 145 chr3 4215487 4215690 -223308888 + MER39B LTR ERV1 335 453 -200 801 250 35 0 chr3 4215685 4215885 -223308693 + Charlie2a DNA MER1_type 1520 1726 -1136 * 2140 153 103 7 chr3 4215885 4216310 -223308268 + Tigger2 DNA MER2_type 1 466 -2252 749 221 0 0 chr3 4216316 4216461 -223308117 + AluSg/x SINE Alu 135 279 -31 321 100 0 0 chr3 4216463 4216513 -223308065 + (CA)n Simple_repeat Simple_repeat 2 51 0 2335 124 48 3 chr3 4216519 4216890 -223307688 + Tigger2 DNA MER2_type 2331 2718 0 2018 213 164 41 chr3 4216893 4217302 -223307276 + Charlie2a DNA MER1_type 1727 2084 -778 2215 115 0 3 chr3 4217302 4217614 -223306964 + AluJo SINE Alu 1 311 -1 2018 213 164 41 chr3 4217614 4218087 -223306491 + Charlie2a DNA MER1_type 2084 2718 -144 3106 123 115 17 chr3 4218665 4219254 -223305324 + LTR24C LTR ERV1 2 466 -1 273 109 0 0 chr3 4219434 4219480 -223305098 + (CA)n Simple_repeat Simple_repeat 1 46 0 330 296 111 19 chr3 4219745 4219907 -223304671 - MIR SINE MIR -67 195 19 690 210 50 22 chr3 4219990 4220171 -223304407 - MIR SINE MIR -49 213 28 2111 109 0 3 chr3 4220495 4220799 -223303779 + AluSx SINE Alu 4 306 -6 21 0 0 0 chr3 4222467 4222488 -223302090 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 4222958 4222979 -223301599 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr3 4223566 4223591 -223300987 + AT_rich Low_complexity Low_complexity 1 25 0 568 229 41 0 chr3 4224901 4225023 -223299555 + FLAM_A SINE Alu 1 127 -6 23 0 0 0 chr3 4225023 4225046 -223299532 + AT_rich Low_complexity Low_complexity 1 23 0 857 200 62 19 chr3 4225580 4225790 -223298788 - MER20 DNA MER1_type 0 219 1 260 275 142 8 chr3 4226262 4226382 -223298196 + L2 LINE L2 2923 3058 -214 620 215 135 35 chr3 4226586 4226786 -223297792 + MIR SINE MIR 43 262 0 235 139 0 0 chr3 4227335 4227371 -223297207 + LTR33 LTR ERVL 3 38 -483 230 299 21 21 chr3 4227638 4227735 -223296843 + LTR33 LTR ERVL 411 507 -14 224 273 28 125 chr3 4228165 4228341 -223296237 + MER5B DNA MER1_type 3 161 -17 272 272 62 0 chr3 4228398 4228479 -223296099 + L2 LINE L2 3150 3235 -37 197 275 114 30 chr3 4228712 4228843 -223295735 - MIR3 SINE MIR -66 142 1 195 229 14 71 chr3 4229150 4229220 -223295358 - MER5A DNA MER1_type -36 153 88 358 280 42 52 chr3 4229442 4229635 -223294943 + MIR3 SINE MIR 3 193 -15 291 71 0 0 chr3 4229643 4229685 -223294893 + (CA)n Simple_repeat Simple_repeat 2 43 0 266 307 89 9 chr3 4230630 4230855 -223293723 + L1ME4a LINE L1 5879 6121 0 438 333 0 0 chr3 4333143 4333254 -223191324 + L2 LINE L2 3157 3267 -5 23 0 0 0 chr3 4333262 4333285 -223191293 + AT_rich Low_complexity Low_complexity 1 23 0 2734 103 8 5 chr3 4333344 4333731 -223190847 + L1PB1 LINE L1 5763 6150 -1 298 347 200 7 chr3 4334628 4334778 -223189800 - MER5A DNA MER1_type -10 179 1 598 172 0 0 chr3 4334913 4335000 -223189578 - AluJ/FLAM SINE Alu -224 88 2 3029 249 57 23 chr3 4335103 4336133 -223188445 - L1M4 LINE L1 -1790 4356 3292 308 64 21 0 chr3 4336162 4336209 -223188369 + (TC)n Simple_repeat Simple_repeat 1 48 0 1006 213 189 7 chr3 4336209 4336285 -223188293 - MER2 DNA MER2_type 0 344 283 2314 92 0 0 chr3 4336285 4336580 -223187998 + AluSx SINE Alu 5 299 -13 1006 213 189 7 chr3 4336580 4336794 -223187784 - MER2 DNA MER2_type -61 283 1 1828 97 37 23 chr3 4337352 4337652 -223186926 + AluSq SINE Alu 1 304 -9 530 172 83 6 chr3 4339259 4339416 -223185162 - PABL_B LTR ERV1 -9 658 490 466 269 304 0 chr3 4340222 4340393 -223184185 + MIR SINE MIR 39 261 -1 416 253 111 25 chr3 4340512 4340832 -223183746 + MLT1K LTR MaLR 158 553 -35 22 0 0 0 chr3 4340954 4340976 -223183602 + AT_rich Low_complexity Low_complexity 1 22 0 396 261 17 25 chr3 4341595 4341714 -223182864 + MLT1K LTR MaLR 132 249 -339 216 0 0 0 chr3 4341726 4341750 -223182828 + (T)n Simple_repeat Simple_repeat 1 24 0 270 265 43 13 chr3 4342010 4342114 -223182464 + L1MCa LINE L1 1 84 -5961 921 274 29 29 chr3 4342122 4342432 -223182146 + L1MCa LINE L1 277 586 -5459 555 190 76 63 chr3 4342491 4342649 -223181929 + L1MCa LINE L1 555 714 -5331 935 192 135 0 chr3 4342755 4342948 -223181630 - MSTA LTR MaLR -209 219 1 245 167 42 0 chr3 4342949 4342997 -223181581 + L1ME1 LINE L1 6111 6160 -6 1738 139 58 41 chr3 4343463 4343758 -223180820 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr3 4344097 4344123 -223180455 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 546 278 131 0 chr3 4344198 4344374 -223180204 - MIR SINE MIR -32 230 32 670 178 8 0 chr3 4344714 4344832 -223179746 - MLT1D LTR MaLR 0 505 387 2266 104 0 0 chr3 4345041 4345339 -223179239 - AluSx SINE Alu -3 309 12 1501 195 3 36 chr3 4345562 4345870 -223178708 + AluJo SINE Alu 1 298 -14 858 168 0 0 chr3 4345914 4346039 -223178539 + AluJb SINE Alu 1 125 -187 438 211 0 0 chr3 4346853 4346962 -223177616 + G-rich Low_complexity Low_complexity 1 109 0 222 278 19 0 chr3 4347300 4347354 -223177224 + L2 LINE L2 3237 3291 -22 266 316 121 17 chr3 4347383 4347614 -223176964 + MIR SINE MIR 8 262 0 1810 108 0 4 chr3 4347646 4347886 -223176692 - AluSc SINE Alu -70 239 1 293 95 0 0 chr3 4347910 4347952 -223176626 - L1MCb LINE L1 -4195 2369 2328 696 202 77 34 chr3 4347955 4348294 -223176284 - L1MB3 LINE L1 -3 6460 2049 1684 231 30 36 chr3 4348304 4348806 -223175772 - L1MA9 LINE L1 -32 6280 5782 283 136 0 0 chr3 4348858 4348902 -223175676 + L1M4 LINE L1 5731 5774 -400 * 1077 172 0 0 chr3 4348901 4349087 -223175491 - L1MA9 LINE L1 -552 5782 5597 * 3173 214 82 24 chr3 4349084 4350193 -223174385 - L1MCb LINE L1 -4508 2237 851 281 87 0 22 chr3 4350195 4350241 -223174337 + (TTTC)n Simple_repeat Simple_repeat 3 47 0 1226 90 6 0 chr3 4350254 4350432 -223174146 + (TTC)n Simple_repeat Simple_repeat 2 180 0 2232 115 0 0 chr3 4350946 4351234 -223173344 - AluSx SINE Alu -24 288 1 192 258 45 15 chr3 4352146 4352212 -223172366 - L2 LINE L2 -1 3312 3245 2685 164 7 20 chr3 4352695 4353134 -223171444 - Tigger2a DNA MER2_type 0 434 2 222 37 0 0 chr3 4353146 4353173 -223171405 + (TA)n Simple_repeat Simple_repeat 2 28 0 421 313 85 64 chr3 4353276 4353711 -223170867 + MLT1J1 LTR MaLR 3 446 0 244 361 189 19 chr3 4353907 4354273 -223170305 - L2 LINE L2 -344 2970 2543 1117 204 75 45 chr3 4354307 4354640 -223169938 + MER2 DNA MER2_type 1 343 -1 1812 139 41 24 chr3 4356614 4356908 -223167670 + THE1B LTR MaLR 1 299 -65 2274 106 7 0 chr3 4356908 4357200 -223167378 - AluSx SINE Alu -18 294 1 274 349 88 17 chr3 4358676 4358914 -223165664 + L2 LINE L2 1865 2119 -1195 588 245 86 7 chr3 4359121 4359272 -223165306 - MIR SINE MIR -71 191 29 3805 191 43 32 chr3 4359479 4360061 -223164517 + L1MB8 LINE L1 5309 5906 -272 2246 167 69 100 chr3 4360061 4360744 -223163834 - MER4A LTR ERV1 0 664 3 3805 191 43 32 chr3 4360744 4361016 -223163562 + L1MB8 LINE L1 5906 6173 -5 678 300 65 67 chr3 4361435 4361882 -223162696 - MLT1K LTR MaLR 0 588 143 260 324 0 0 chr3 4362098 4362172 -223162406 + MIR3 SINE MIR 112 185 -23 2289 112 0 0 chr3 4362328 4362631 -223161947 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr3 4362659 4362682 -223161896 + AT_rich Low_complexity Low_complexity 1 23 0 1002 146 189 5 chr3 4362845 4363030 -223161548 + MER20 DNA MER1_type 1 219 0 203 79 26 0 chr3 4363873 4363911 -223160667 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 370 301 153 14 chr3 4364908 4365124 -223159454 + MIR SINE MIR 13 258 -4 186 293 35 0 chr3 4365835 4365893 -223158685 - MIR3 SINE MIR -37 171 112 222 338 13 0 chr3 4366621 4366698 -223157880 + MIR SINE MIR 68 145 -63 944 147 7 0 chr3 4367754 4367897 -223156681 - AluJb SINE Alu -168 144 1 1721 170 10 10 chr3 4368831 4369131 -223155447 + AluJo SINE Alu 1 300 -12 1280 177 42 100 chr3 4369146 4369456 -223155122 + AluJo SINE Alu 1 292 -20 189 288 225 0 chr3 4369528 4369608 -223154970 - L3 LINE CR1 -292 1285 1188 2433 121 22 25 chr3 4369700 4370065 -223154513 + THE1B LTR MaLR 1 364 0 621 317 176 32 chr3 4370068 4370409 -223154169 - L3 LINE CR1 -437 1140 751 345 232 72 65 chr3 4371515 4371653 -223152925 + MER103 DNA DNA 10 148 -18 272 375 13 33 chr3 4371709 4371861 -223152717 - MIR3 SINE MIR -39 169 21 542 239 43 111 chr3 4372164 4372255 -223152323 - Charlie8 DNA MER1_type -122 219 123 2145 109 0 50 chr3 4372255 4372576 -223152002 + AluSx SINE Alu 5 309 -3 542 239 43 111 chr3 4372576 4372718 -223151860 - Charlie8 DNA MER1_type -218 123 2 1121 265 70 26 chr3 4373214 4373779 -223150799 + L2 LINE L2 2570 3154 -159 21 36 0 0 chr3 4373812 4373840 -223150738 + AT_rich Low_complexity Low_complexity 1 28 0 194 298 0 0 chr3 4373917 4373974 -223150604 + L2 LINE L2 3255 3311 -2 337 195 26 26 chr3 4373989 4374066 -223150512 + MLT1L LTR MaLR 3 79 -536 449 301 65 37 chr3 4374591 4374837 -223149741 + Charlie8 DNA MER1_type 5 257 -2160 468 0 0 0 chr3 4374851 4374903 -223149675 + (TG)n Simple_repeat Simple_repeat 2 53 0 209 296 59 89 chr3 4376084 4376219 -223148359 + MIR SINE MIR 17 147 -61 742 249 73 96 chr3 4376228 4376630 -223147948 - MLT1I LTR MaLR -7 402 1 201 237 0 0 chr3 4376675 4376734 -223147844 + (TA)n Simple_repeat Simple_repeat 2 60 0 294 290 30 53 chr3 4377462 4377593 -223146985 - L2 LINE L2 -4 3309 3182 329 232 40 24 chr3 4378125 4378250 -223146328 + L1ME LINE L1 5630 5756 -365 307 293 75 34 chr3 4378816 4378963 -223145615 - LTR47A-int LTR ERVL -5176 167 15 1590 142 47 4 chr3 4378977 4378995 -223145583 - LTR47A LTR ERVL 0 452 436 1953 169 156 5 chr3 4378995 4379367 -223145211 + MSTA LTR MaLR 1 428 0 1590 142 47 4 chr3 4379367 4379733 -223144845 - LTR47A LTR ERVL -16 436 1 577 277 141 5 chr3 4379749 4379955 -223144623 + MIR SINE MIR 23 256 -6 28 0 0 0 chr3 4380471 4380499 -223144079 + AT_rich Low_complexity Low_complexity 1 28 0 1988 145 0 16 chr3 4380499 4380802 -223143776 + AluSx SINE Alu 1 298 -14 220 286 48 24 chr3 4380824 4380908 -223143670 - MIR SINE MIR -22 240 155 1335 215 87 36 chr3 4381139 4381225 -223143353 - MER113 DNA MER1_type? -1 520 440 4294 139 67 10 chr3 4381225 4381913 -223142665 - LTR8A LTR ERV1 0 727 1 1335 215 87 36 chr3 4381913 4382319 -223142259 - MER113 DNA MER1_type? -81 440 3 798 188 17 104 chr3 4382440 4382680 -223141898 + MER20 DNA MER1_type 1 219 0 27 49 0 0 chr3 4383098 4383139 -223141439 + AT_rich Low_complexity Low_complexity 1 41 0 1815 174 7 0 chr3 4383139 4383438 -223141140 + AluJb SINE Alu 1 301 -11 1071 103 0 7 chr3 4384071 4384217 -223140361 + AluSg/x SINE Alu 135 279 -30 415 253 114 32 chr3 4384612 4384770 -223139808 + MIR3 SINE MIR 38 208 0 3242 138 14 68 chr3 4384936 4385137 -223139441 + LTR26B LTR ERV1 4 214 -317 1604 174 19 47 chr3 4385137 4385454 -223139124 + AluJb SINE Alu 1 308 -4 3242 138 14 68 chr3 4385454 4385810 -223138768 + LTR26B LTR ERV1 214 531 0 817 258 33 16 chr3 4386111 4386293 -223138285 - MER5A DNA MER1_type -4 185 1 1154 164 116 58 chr3 4386378 4386689 -223137889 + MLT1D LTR MaLR 12 340 -165 261 119 48 0 chr3 4386665 4386707 -223137871 - MLT1D LTR MaLR -154 351 308 * 580 294 99 14 chr3 4387536 4387757 -223136821 - MIR SINE MIR -5 257 18 2426 96 0 0 chr3 4387932 4388244 -223136334 - AluSx SINE Alu 0 312 1 993 215 45 0 chr3 4388765 4388965 -223135613 - MER3 DNA MER1_type 0 209 1 311 301 68 20 chr3 4389211 4389357 -223135221 - MIR SINE MIR -61 201 49 337 258 13 0 chr3 4389358 4389445 -223135133 - MIR SINE MIR -92 116 40 442 306 25 13 chr3 4389626 4389783 -223134795 - MIR SINE MIR 0 262 104 4812 152 20 9 chr3 4390837 4391641 -223132937 + L1MC1 LINE L1 5509 6321 -12 360 364 23 6 chr3 4392152 4392328 -223132250 + MIR3 SINE MIR 17 195 -13 1889 197 16 101 chr3 4392420 4392967 -223131611 + MLT1D LTR MaLR 3 503 -2 220 324 14 0 chr3 4393147 4393221 -223131357 + (TA)n Simple_repeat Simple_repeat 2 76 0 186 283 170 28 chr3 4393466 4393572 -223131006 - MIR3 SINE MIR -4 204 84 327 274 183 7 chr3 4393948 4394101 -223130477 - MIR3 SINE MIR -14 194 15 227 291 0 0 chr3 4395008 4395063 -223129515 - MIR3 SINE MIR 0 208 154 433 256 53 0 chr3 4395065 4395198 -223129380 + MER117 DNA MER1_type 2 141 -56 198 208 260 39 chr3 4395254 4395331 -223129247 - MIR3 SINE MIR -52 156 63 206 373 15 0 chr3 4395700 4395767 -223128811 - L2 LINE L2 -7 3265 3198 2214 124 3 0 chr3 4395934 4396241 -223128337 + AluSq SINE Alu 1 308 -5 1215 260 59 52 chr3 4396331 4396792 -223127786 - L1ME3A LINE L1 -1 6169 5706 457 78 16 0 chr3 4396814 4396878 -223127700 - MER41A LTR ERV1 -90 464 400 1108 287 89 2 chr3 4396878 4397272 -223127306 - L1ME3A LINE L1 -452 5718 5291 842 228 216 8 chr3 4397349 4397827 -223126751 - LTR50 LTR ERVL 0 795 124 1373 179 115 86 chr3 4397969 4398486 -223126092 - LTR36 LTR ERV1 0 611 1 643 187 66 30 chr3 4398504 4398691 -223125887 - MIR SINE MIR -21 241 47 1182 199 17 39 chr3 4399598 4399829 -223124749 - AluJo SINE Alu -86 226 1 819 207 92 6 chr3 4399829 4400003 -223124575 - MLT1D LTR MaLR -313 192 4 22 35 0 0 chr3 4401583 4401612 -223122966 + AT_rich Low_complexity Low_complexity 1 29 0 278 296 61 17 chr3 4402090 4402205 -223122373 + MIR SINE MIR 137 256 -6 31 76 0 0 chr3 4402557 4402623 -223121955 + AT_rich Low_complexity Low_complexity 1 66 0 459 63 0 0 chr3 4402873 4402936 -223121642 + (TG)n Simple_repeat Simple_repeat 2 64 0 348 297 10 10 chr3 4402936 4403037 -223121541 - LTR67 LTR ERVL -9 548 448 234 222 139 28 chr3 4403311 4403419 -223121159 - MER113 DNA MER1_type? -401 120 1 1185 254 81 47 chr3 4404101 4404546 -223120032 - MLT1D LTR MaLR 0 505 46 1679 184 62 42 chr3 4404548 4404729 -223119849 - MLT2D LTR ERVL -3 411 235 2775 195 22 68 chr3 4404729 4405371 -223119207 + LTR9 LTR ERV1 1 612 0 1679 184 62 42 chr3 4405371 4405481 -223119097 - MLT2D LTR ERVL -179 235 129 2393 60 0 13 chr3 4405481 4405780 -223118798 + AluY SINE Alu 1 295 -16 1679 184 62 42 chr3 4405780 4405890 -223118688 - MLT2D LTR ERVL -285 129 1 237 143 24 24 chr3 4405898 4405940 -223118638 - MLT1D LTR MaLR -463 42 1 786 216 32 42 chr3 4405957 4406147 -223118431 - MIR SINE MIR -38 224 37 238 329 0 37 chr3 4406400 4406482 -223118096 - L2 LINE L2 -2 3270 3192 2102 86 52 0 chr3 4407118 4407385 -223117193 - AluSc SINE Alu -28 281 1 4187 118 24 5 chr3 4408080 4408671 -223115907 - LTR43 LTR ERV1 0 602 1 302 291 122 17 chr3 4408742 4408914 -223115664 + MIR SINE MIR 73 262 0 1714 174 98 113 chr3 4409004 4409302 -223115276 - MLT1D LTR MaLR 0 505 217 3621 158 6 2 chr3 4409302 4409827 -223114751 - MER1A DNA MER1_type 0 527 1 1714 174 98 113 chr3 4409827 4410041 -223114537 - MLT1D LTR MaLR -288 217 1 277 209 132 62 chr3 4410309 4410438 -223114140 - MLT1J2 LTR MaLR -310 140 3 2338 148 133 2 chr3 4411845 4412245 -223112333 - LTR47A LTR ERVL 0 452 1 4812 146 51 51 chr3 4412257 4413738 -223110840 - MER21-int LTR ERV1 -258 5840 4411 394 36 18 18 chr3 4413739 4413794 -223110784 - MLT2A1 LTR ERVL 0 453 399 261 0 0 0 chr3 4413798 4413827 -223110751 + (TG)n Simple_repeat Simple_repeat 2 30 0 2202 64 37 7 chr3 4413847 4414142 -223110436 - MLT2A1 LTR ERVL -140 304 1 1768 220 19 6 chr3 4414142 4414505 -223110073 - MER21-int LTR ERV1 -2026 2165 1798 243 0 0 0 chr3 4414621 4414648 -223109930 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 252 0 0 0 chr3 4414647 4414675 -223109903 + (CA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr3 4415996 4416017 -223108561 + AT_rich Low_complexity Low_complexity 1 21 0 690 297 72 43 chr3 4416501 4416941 -223107637 + Charlie8 DNA MER1_type 1 440 -1977 422 16 0 109 chr3 4417034 4417098 -223107480 - MLT2B1 LTR ERVL 0 520 464 213 175 0 0 chr3 4417101 4417141 -223107437 + (CATA)n Simple_repeat Simple_repeat 4 43 0 276 170 0 130 chr3 4417141 4417241 -223107337 - L1MC4 LINE L1 -1339 6703 6617 273 196 21 93 chr3 4417155 4417252 -223107326 + L1MC4 LINE L1 6614 6703 -1339 * 2249 185 41 30 chr3 4417291 4417755 -223106823 - MLT2B1 LTR ERVL -51 469 1 407 300 110 11 chr3 4419119 4419320 -223105258 + MIR SINE MIR 19 237 -25 747 290 136 18 chr3 4420638 4421079 -223103499 - L2 LINE L2 0 3313 2821 2055 109 35 109 chr3 4421088 4421493 -223103085 + THE1C LTR MaLR 1 375 0 349 289 47 57 chr3 4421493 4421704 -223102874 + MLT1I LTR MaLR 175 383 -26 439 239 92 23 chr3 4422043 4422173 -223102405 - MLT1J2 LTR MaLR -275 175 37 193 276 0 52 chr3 4422344 4422402 -223102176 + MIR3 SINE MIR 8 62 -146 4843 171 30 36 chr3 4422512 4423898 -223100680 + L1MB3 LINE L1 4810 6181 -2 400 154 0 0 chr3 4425422 4425487 -223099091 - THE1B LTR MaLR 0 364 300 1103 146 5 22 chr3 4425491 4425676 -223098902 + AluSx SINE Alu 1 182 -130 6976 19 1 0 chr3 4425776 4426621 -223097957 + L1HS LINE L1 5310 6155 0 226 229 0 0 chr3 4426623 4426684 -223097894 + A-rich Low_complexity Low_complexity 1 61 0 1892 146 0 20 chr3 4427196 4427498 -223097080 + AluSx SINE Alu 1 296 -16 188 235 0 0 chr3 4427498 4427532 -223097046 - MIR3 SINE MIR -24 184 151 1997 115 81 32 chr3 4427592 4427939 -223096639 + THE1B LTR MaLR 1 364 0 4969 62 1 3 chr3 4427939 4428597 -223095981 + THE1B-int LTR MaLR 1 657 -923 1337 155 4 52 chr3 4428597 4428849 -223095729 + THE1B LTR MaLR 125 364 0 304 264 110 110 chr3 4428850 4429077 -223095501 - MIR SINE MIR -32 230 4 458 243 87 28 chr3 4429205 4429365 -223095213 - MIR3 SINE MIR -48 160 20 1281 211 0 76 chr3 4429566 4429774 -223094804 + AluJo SINE Alu 1 180 -132 1993 173 12 6 chr3 4429774 4430115 -223094463 + MER61A LTR ERV1 1 343 0 1281 211 0 76 chr3 4430115 4430209 -223094369 + AluJo SINE Alu 180 280 -32 30 0 0 0 chr3 4430209 4430239 -223094339 + AT_rich Low_complexity Low_complexity 1 30 0 403 296 23 109 chr3 4430951 4431208 -223093370 - MIR SINE MIR -9 253 19 249 291 0 25 chr3 4431379 4431458 -223093120 - MIR3 SINE MIR 0 208 132 253 229 148 0 chr3 4431461 4431522 -223093056 - L2 LINE L2 -2 3270 3201 321 267 11 7 chr3 4432369 4432490 -223092088 - LTR43 LTR ERV1 -207 472 223 352 262 69 48 chr3 4432784 4432929 -223091649 + MLT1K LTR MaLR 274 421 -167 671 305 75 25 chr3 4433141 4433663 -223090915 + L1ME4a LINE L1 5350 5897 -224 1445 258 11 8 chr3 4433850 4434206 -223090372 + MLT1A2 LTR MaLR 4 360 -14 296 183 42 0 chr3 4434632 4434703 -223089875 + MER116 DNA Mariner 1 74 -6 2067 144 0 0 chr3 4436440 4436784 -223087794 - AluSx SINE Alu 0 344 1 1460 208 109 43 chr3 4437657 4438163 -223086415 - MER90 LTR ERV1 -6 608 70 2125 141 13 0 chr3 4438516 4438822 -223085756 - AluJo SINE Alu -2 310 1 212 292 79 22 chr3 4438953 4439042 -223085536 + MIR3 SINE MIR 90 183 -25 1643 249 190 30 chr3 4439562 4440389 -223084189 - HAL1 LINE L1 -209 2298 1340 383 306 89 0 chr3 4440393 4440674 -223083904 - HAL1 LINE L1 -1218 1289 984 432 288 113 19 chr3 4440860 4441072 -223083506 - HAL1 LINE L1 -1842 665 434 206 342 57 19 chr3 4441414 4441572 -223083006 + L2 LINE L2 2917 3080 -192 1877 154 3 13 chr3 4441589 4441900 -223082678 - AluJb SINE Alu -4 308 1 2232 78 35 0 chr3 4442672 4442955 -223081623 + AluY SINE Alu 1 293 -18 491 221 302 0 chr3 4442957 4443129 -223081449 + MIR SINE MIR 29 252 -10 220 214 18 18 chr3 4443173 4443229 -223081349 + (CA)n Simple_repeat Simple_repeat 1 56 0 427 315 34 0 chr3 4443276 4443422 -223081156 - MER117 DNA MER1_type -36 161 11 388 352 49 6 chr3 4443724 4443886 -223080692 - MIR SINE MIR -13 249 81 714 254 215 0 chr3 4444154 4444359 -223080219 - MIR SINE MIR -8 254 6 462 306 0 0 chr3 4445078 4445189 -223079389 + MER81 DNA DNA 4 114 0 233 274 140 18 chr3 4445361 4445467 -223079111 - L1MC/D LINE L1 -2273 5535 5401 1743 149 72 0 chr3 4445467 4445743 -223078835 + AluSx SINE Alu 1 296 -16 233 274 140 18 chr3 4445743 4445800 -223078778 - L1MC/D LINE L1 -2407 5401 5352 261 376 64 0 chr3 4446867 4446976 -223077602 - L2 LINE L2 0 3313 3198 2430 69 3 0 chr3 4447094 4447398 -223077180 + AluY SINE Alu 1 305 -6 258 282 0 113 chr3 4448067 4448191 -223076387 + MIR3 SINE MIR 87 196 -12 428 255 135 20 chr3 4448701 4448901 -223075677 + MIR SINE MIR 31 253 -9 477 40 40 0 chr3 4450115 4450191 -223074387 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 1743 204 67 12 chr3 4450199 4450776 -223073802 - L1ME1 LINE L1 -7 6159 5517 975 255 87 19 chr3 4450782 4451150 -223073428 - MLT1D LTR MaLR 0 505 113 1182 151 58 92 chr3 4451162 4451496 -223073082 + AluJb SINE Alu 1 324 0 475 169 24 0 chr3 4451539 4451622 -223072956 - MLT1D LTR MaLR -417 88 4 1579 189 70 39 chr3 4451633 4451803 -223072775 - L1ME1 LINE L1 -662 5504 5341 2208 124 7 0 chr3 4451803 4452110 -223072468 - AluSx SINE Alu -3 309 1 1579 189 70 39 chr3 4452110 4452518 -223072060 - L1ME1 LINE L1 -825 5341 4902 1936 164 0 3 chr3 4453744 4454043 -223070535 - AluJo SINE Alu -14 298 1 232 332 158 21 chr3 4455111 4455301 -223069277 + L3 LINE CR1 1009 1224 -353 181 152 61 0 chr3 4455358 4455391 -223069187 + MER5B DNA MER1_type 11 45 -133 722 209 120 0 chr3 4455566 4455724 -223068854 + MER45A DNA AcHobo 2 178 0 2276 94 3 0 chr3 4457303 4457601 -223066977 - AluSx SINE Alu -13 299 1 581 183 0 48 chr3 4458193 4458319 -223066259 - Tigger2 DNA MER2_type 0 2718 2599 569 240 0 0 chr3 4458316 4458437 -223066141 + MER45A DNA AcHobo 57 177 -1 * 1774 117 78 3 chr3 4458645 4458952 -223065626 - Tigger2 DNA MER2_type -116 2602 2273 266 254 30 0 chr3 4458942 4459009 -223065569 - Tigger2 DNA MER2_type -2649 69 1 * 348 325 42 6 chr3 4459268 4459434 -223065144 + MIR3 SINE MIR 30 201 -7 256 269 30 0 chr3 4459941 4460008 -223064570 + Tigger2 DNA MER2_type 1 69 -2649 * 336 139 241 13 chr3 4459998 4460077 -223064501 + Tigger2 DNA MER2_type 2273 2369 -349 336 286 30 75 chr3 4460653 4460786 -223063792 + L2 LINE L2 2943 3069 -203 400 353 0 0 chr3 4461100 4461222 -223063356 + MIR3 SINE MIR 72 193 -15 3912 122 29 8 chr3 4461641 4462262 -223062316 + MER41B LTR ERV1 2 635 0 632 288 101 5 chr3 4462264 4462483 -223062095 - MIR SINE MIR 0 262 23 3447 210 51 36 chr3 4463051 4464140 -223060438 + L1MC4a LINE L1 6700 7805 -3 641 190 29 36 chr3 4464158 4464295 -223060283 - AluJo SINE Alu -176 136 1 1745 166 3 19 chr3 4464410 4464723 -223059855 + AluJb SINE Alu 5 312 0 230 245 0 0 chr3 4464845 4464898 -223059680 - L2 LINE L2 -4 3309 3257 1915 106 19 0 chr3 4465808 4466064 -223058514 + AluSq SINE Alu 49 309 -4 1264 78 21 21 chr3 4466064 4466255 -223058323 - PABL_A LTR ERV1 -469 191 1 23 0 0 0 chr3 4466726 4466749 -223057829 + AT_rich Low_complexity Low_complexity 1 23 0 583 99 148 10 chr3 4466754 4466855 -223057723 - FLAM_C SINE Alu -24 119 5 860 131 77 0 chr3 4466904 4467034 -223057544 + FRAM SINE Alu 20 159 -17 293 367 17 0 chr3 4467223 4467343 -223057235 - MIR SINE MIR -133 129 8 534 236 48 36 chr3 4467631 4467796 -223056782 + MER5B DNA MER1_type 11 177 -1 688 129 103 189 chr3 4468023 4468238 -223056340 - MER33 DNA MER1_type -2265 320 145 1734 167 20 7 chr3 4468238 4468532 -223056046 + AluJb SINE Alu 1 298 -14 688 129 103 189 chr3 4468532 4468666 -223055912 - MER33 DNA MER1_type -2440 145 1 3275 70 10 0 chr3 4468897 4469381 -223055197 + L1P LINE L1 4915 5403 -743 190 379 0 0 chr3 4469527 4469593 -223054985 - MIR SINE MIR -72 136 71 276 163 0 0 chr3 4469593 4469642 -223054936 + L1MC3 LINE L1 7045 7093 -692 258 262 24 12 chr3 4469646 4469730 -223054848 + MLT1F1 LTR MaLR 40 124 -443 1905 187 74 71 chr3 4469731 4470326 -223054252 + L1MC3 LINE L1 7189 7785 0 2223 112 0 13 chr3 4471113 4471416 -223053162 - AluSx SINE Alu -13 299 1 2087 121 0 0 chr3 4472417 4472722 -223051856 + AluSx SINE Alu 1 305 0 527 281 67 12 chr3 4473136 4473300 -223051278 - MER5B DNA MER1_type 0 178 6 275 87 0 43 chr3 4474012 4474058 -223050520 + L2 LINE L2 3195 3238 -75 2160 112 3 0 chr3 4474670 4474965 -223049613 + AluSp SINE Alu 1 296 -17 390 363 57 6 chr3 4475153 4475310 -223049268 - MIR3 SINE MIR -24 184 20 28 0 0 0 chr3 4475418 4475446 -223049132 + AT_rich Low_complexity Low_complexity 1 28 0 1771 190 7 3 chr3 4475494 4475789 -223048789 + AluSx SINE Alu 1 296 -16 2361 123 5 32 chr3 4479299 4479673 -223044905 - THE1B LTR MaLR 0 364 1 8116 128 30 8 chr3 4480004 4481316 -223043262 - Tigger1 DNA MER2_type 0 2418 1079 3581 135 107 6 chr3 4481305 4481941 -223042637 - Tigger1 DNA MER2_type -1656 762 63 * 341 211 273 19 chr3 4483793 4483954 -223040624 - L1MC4a LINE L1 -1859 5949 5748 243 346 0 0 chr3 4483993 4484071 -223040507 - L1MC4a LINE L1 -2144 5664 5587 1690 80 0 0 chr3 4484089 4484302 -223040276 + AluSg SINE Alu 1 213 -97 401 236 183 21 chr3 4484344 4484535 -223040043 - L1MC4a LINE L1 -2291 5517 5296 549 300 143 29 chr3 4484571 4485115 -223039463 - L1MC4a LINE L1 -908 5238 4633 26 0 0 0 chr3 4485386 4485412 -223039166 + AT_rich Low_complexity Low_complexity 1 26 0 363 232 36 94 chr3 4486473 4486581 -223037997 + L2 LINE L2 3182 3282 -31 2545 98 30 6 chr3 4486581 4486947 -223037631 - THE1C LTR MaLR 0 375 1 363 232 36 94 chr3 4486947 4486976 -223037602 + L2 LINE L2 3282 3311 -2 562 280 13 13 chr3 4486980 4487130 -223037448 + MIR SINE MIR 34 183 -79 1670 188 40 3 chr3 4487383 4487708 -223036870 + MER1B DNA MER1_type 1 337 0 244 295 105 11 chr3 4487799 4487894 -223036684 - L3 LINE CR1 -278 1299 1196 305 261 76 32 chr3 4488468 4488625 -223035953 - L1ME LINE L1 -283 5838 5675 269 254 211 7 chr3 4488642 4488784 -223035794 - L1ME LINE L1 -1445 4701 4531 1873 151 18 0 chr3 4489680 4489965 -223034613 + AluJb SINE Alu 9 298 -14 254 267 67 33 chr3 4490205 4490295 -223034283 + MIR SINE MIR 13 105 -157 1042 130 0 34 chr3 4493448 4493625 -223030953 + AluSg/x SINE Alu 124 294 -15 234 261 54 43 chr3 4598057 4598149 -222926429 + MIR SINE MIR 103 195 -67 1655 156 3 52 chr3 4599579 4599907 -222924671 - AluJb SINE Alu 0 312 1 187 200 0 60 chr3 4599925 4599975 -222924603 - MIR SINE MIR -106 156 110 1658 157 18 11 chr3 4600533 4600819 -222923759 + AluJo SINE Alu 1 288 -24 207 187 36 65 chr3 4602526 4602665 -222921913 + (CATAA)n Simple_repeat Simple_repeat 5 139 0 1132 297 88 26 chr3 4605131 4605331 -222919247 - L2 LINE L2 0 3313 3127 1727 128 75 11 chr3 4605331 4605618 -222918960 + AluSx SINE Alu 1 304 0 1132 297 88 26 chr3 4605618 4606179 -222918399 - L2 LINE L2 -186 3127 2502 277 307 45 11 chr3 4606196 4606284 -222918294 - MIR SINE MIR -119 143 53 785 189 5 121 chr3 4606293 4606499 -222918079 - MER5A DNA MER1_type -1 188 7 342 336 79 21 chr3 4606940 4607080 -222917498 - MIR3 SINE MIR -3 205 58 1622 189 40 15 chr3 4608010 4608411 -222916167 - Charlie1 DNA MER1_type -8 2753 2343 198 285 180 47 chr3 4608544 4608716 -222915862 + MIR SINE MIR 21 215 -47 1774 132 91 0 chr3 4609158 4609423 -222915155 - AluSx SINE Alu -21 291 3 2358 76 3 0 chr3 4609902 4610204 -222914374 + AluY SINE Alu 1 303 -8 206 215 0 46 chr3 4610849 4610914 -222913664 - L2 LINE L2 -1052 2262 2201 1873 133 95 24 chr3 4611669 4612006 -222912572 - MER46B DNA MER2_type 0 236 1 633 278 68 68 chr3 4614084 4614466 -222910112 - MLT1J1 LTR MaLR 0 446 65 2052 201 57 9 chr3 4615765 4616204 -222908374 - LOR1b LTR ERV1 0 461 2 443 327 67 73 chr3 4617583 4618048 -222906530 + L2 LINE L2 2808 3269 -3 1617 192 13 55 chr3 4619394 4619774 -222904804 - MLT1A1 LTR MaLR -1 364 1 2319 181 36 23 chr3 4620092 4620621 -222903957 + L1MA8 LINE L1 5752 6287 -4 27 0 0 0 chr3 4620622 4620649 -222903929 + AT_rich Low_complexity Low_complexity 1 27 0 2236 107 0 19 chr3 4620705 4621022 -222903556 + AluSq SINE Alu 1 311 -2 2142 125 7 0 chr3 4621440 4621735 -222902843 + AluSx SINE Alu 1 297 -15 779 268 57 13 chr3 4622541 4622769 -222901809 - LTR16A1 LTR ERVL -12 445 208 561 256 35 12 chr3 4623648 4623820 -222900758 + MER5B DNA MER1_type 3 178 0 879 225 16 0 chr3 4623866 4624048 -222900530 - MER5A DNA MER1_type -3 186 2 659 292 118 55 chr3 4624967 4625296 -222899282 + L1M3d LINE L1 413 762 -5541 4968 257 32 26 chr3 4625601 4627019 -222897559 + L1M3d LINE L1 777 2184 -4198 2169 126 0 7 chr3 4627019 4627329 -222897249 + AluSx SINE Alu 1 308 -4 4968 257 32 26 chr3 4627329 4629224 -222895354 + L1M3d LINE L1 2184 4170 -2212 2019 117 38 0 chr3 4629224 4629515 -222895063 - AluSx SINE Alu -10 302 1 4968 257 32 26 chr3 4629515 4629600 -222894978 + L1M3d LINE L1 4170 4253 -2129 876 131 11 60 chr3 4629598 4629781 -222894797 - L1 LINE L1 -1947 4199 4026 * 2436 186 58 9 chr3 4629797 4630336 -222894242 + L1MB2 LINE L1 5591 6155 -16 5096 66 21 27 chr3 4630344 4631504 -222893074 - SVA Other Other -955 1386 2 500 290 168 0 chr3 4631556 4631711 -222892867 - MER5A DNA MER1_type 0 189 9 822 174 28 90 chr3 4632652 4632864 -222891714 - MER63A DNA MER1_type -8 202 4 2214 114 3 29 chr3 4633210 4633526 -222891052 + AluSx SINE Alu 1 308 -4 300 328 61 15 chr3 4633553 4633684 -222890894 - L2 LINE L2 -1 3312 3176 645 231 20 138 chr3 4634382 4634729 -222889849 + L1MD1 LINE L1 5927 6232 -10 268 250 0 98 chr3 4634846 4634938 -222889640 - MIR SINE MIR -16 246 164 1663 188 11 7 chr3 4635198 4635485 -222889093 - AluJo SINE Alu -24 288 1 2257 103 7 0 chr3 4636757 4637059 -222887519 - AluSx SINE Alu -8 304 1 208 258 186 31 chr3 4638889 4638986 -222885592 - L2 LINE L2 -27 3286 3175 320 215 168 9 chr3 4639209 4639316 -222885262 + L1ME3 LINE L1 6031 6154 -8 2040 110 28 3 chr3 4639423 4639714 -222884864 + AluSc SINE Alu 2 299 -10 373 305 58 29 chr3 4640192 4640366 -222884212 - L3 LINE CR1 -190 1387 1209 968 229 129 25 chr3 4641357 4641720 -222882858 - MLT1I LTR MaLR -4 405 5 473 241 135 7 chr3 4642199 4642340 -222882238 - Charlie8 DNA MER1_type -2171 246 88 695 261 43 34 chr3 4643622 4643856 -222880722 - MLT1K LTR MaLR -11 577 342 518 277 40 0 chr3 4643901 4644049 -222880529 - MLT1K LTR MaLR -412 176 23 354 347 68 46 chr3 4645117 4645621 -222878957 - L2 LINE L2 -499 2815 2301 302 256 84 116 chr3 4645632 4645775 -222878803 + L2 LINE L2 3012 3147 -166 1587 195 30 10 chr3 4645775 4645946 -222878632 - AluJo SINE Alu -8 304 123 213 39 0 0 chr3 4645946 4645972 -222878606 + (TTTTG)n Simple_repeat Simple_repeat 4 29 0 1587 195 30 10 chr3 4645972 4646098 -222878480 - AluJo SINE Alu -189 123 1 302 256 84 116 chr3 4646098 4646169 -222878409 + L2 LINE L2 3147 3219 -94 2521 59 0 3 chr3 4646246 4646552 -222878026 + AluY SINE Alu 1 305 -6 914 173 62 6 chr3 4646557 4646736 -222877842 - MLT1D LTR MaLR -60 445 257 458 237 46 94 chr3 4646742 4646951 -222877627 - MER4C LTR ERV1 -8 685 468 2318 61 0 0 chr3 4646951 4647272 -222877306 - AluY SINE Alu 0 321 1 458 237 46 94 chr3 4647272 4647576 -222877002 - MER4C LTR ERV1 -225 468 125 513 126 54 18 chr3 4647634 4647745 -222876833 - MER4C LTR ERV1 -349 116 2 199 260 19 115 chr3 4649545 4649649 -222874929 + L2 LINE L2 2565 2658 -656 343 344 38 13 chr3 4650455 4650612 -222873966 + MER5A DNA MER1_type 24 184 -5 369 362 22 26 chr3 4650616 4650845 -222873733 + L2 LINE L2 2745 2972 -342 1434 208 20 35 chr3 4650848 4651194 -222873384 + MER58B DNA MER1_type 1 341 0 436 295 18 48 chr3 4652517 4652683 -222871895 - MIR SINE MIR -66 196 36 528 249 76 15 chr3 4653962 4654159 -222870419 - MER63A DNA MER1_type 0 210 2 634 314 206 31 chr3 4655321 4655907 -222868671 + L2 LINE L2 2037 2725 -589 368 277 69 31 chr3 4656188 4656318 -222868260 + L2 LINE L2 3137 3271 -1 276 194 250 8 chr3 4656869 4656993 -222867585 + MER103 DNA DNA 2 155 -11 279 71 0 0 chr3 4657740 4657782 -222866796 + (TA)n Simple_repeat Simple_repeat 2 43 0 1848 110 0 0 chr3 4657782 4658027 -222866551 - AluSc SINE Alu -19 290 46 684 333 40 17 chr3 4658896 4659247 -222865331 - LTR16A LTR ERVL -6 444 86 187 130 22 22 chr3 4659746 4659792 -222864786 + GA-rich Low_complexity Low_complexity 4 49 0 537 308 49 57 chr3 4660743 4660844 -222863734 + Charlie8 DNA MER1_type 71 171 -2246 1875 170 3 10 chr3 4660844 4661156 -222863422 - AluJo SINE Alu -2 310 1 537 308 49 57 chr3 4661156 4661440 -222863138 + Charlie8 DNA MER1_type 171 453 -1964 599 185 110 153 chr3 4662680 4663026 -222861552 + MER46C DNA MER2_type 2 332 -6 658 313 70 10 chr3 4663105 4663436 -222861142 + L2 LINE L2 2740 3095 -218 437 319 14 28 chr3 4664987 4665131 -222859447 + L2 LINE L2 3168 3309 -4 * 519 237 101 0 chr3 4665129 4665268 -222859310 + MIR SINE MIR 72 224 -38 2023 130 14 43 chr3 4665343 4665690 -222858888 - MER1B DNA MER1_type 0 337 1 180 194 194 0 chr3 4666499 4666535 -222858043 + MIR SINE MIR 64 106 -102 338 367 80 15 chr3 4667044 4667243 -222857335 - MIR SINE MIR -19 243 32 811 325 83 32 chr3 4667374 4667901 -222856677 + L2 LINE L2 1823 2376 -938 212 193 70 35 chr3 4668012 4668069 -222856509 - L2 LINE L2 0 3313 3255 595 339 68 24 chr3 4669555 4669924 -222854654 - MLT1K LTR MaLR -180 408 24 3319 172 30 6 chr3 4669966 4670623 -222853955 + L1MB3 LINE L1 5509 6181 -2 3959 153 27 6 chr3 4670768 4671586 -222852992 - L1MA9 LINE L1 -22 6290 5356 3195 167 13 0 chr3 4671586 4672138 -222852440 - L1PA16 LINE L1 -1 6165 5607 27 0 0 0 chr3 4673704 4673731 -222850847 + AT_rich Low_complexity Low_complexity 1 27 0 2661 33 0 0 chr3 4675099 4675400 -222849178 + AluY SINE Alu 2 302 -9 307 202 46 46 chr3 4675453 4675562 -222849016 + MLT1H LTR MaLR 441 549 0 255 284 20 20 chr3 4676551 4676653 -222847925 - LTR67 LTR ERVL -7 550 449 642 309 57 0 chr3 4677083 4677277 -222847301 - L3 LINE CR1 -459 1118 914 1006 277 80 58 chr3 4677573 4678071 -222846507 + L2 LINE L2 2805 3313 0 508 254 56 0 chr3 4678096 4678222 -222846356 + L2 LINE L2 3178 3310 -3 418 290 168 0 chr3 4678636 4678791 -222845787 - MER5A DNA MER1_type 0 189 9 187 367 17 0 chr3 4678921 4678981 -222845597 - MIR SINE MIR -70 138 78 213 296 159 0 chr3 4679056 4679144 -222845434 - L2 LINE L2 0 3313 3212 842 203 35 5 chr3 4679499 4679696 -222844882 + MER3 DNA MER1_type 3 205 -4 228 350 133 21 chr3 4679700 4679934 -222844644 + L2 LINE L2 2605 2864 -450 2099 177 37 0 chr3 4680522 4680924 -222843654 + L1MA3 LINE L1 5887 6303 -2 4073 113 5 70 chr3 4681090 4681828 -222842750 - LTR8 LTR ERV1 0 691 2 228 67 0 0 chr3 4682770 4682800 -222841778 + (CCA)n Simple_repeat Simple_repeat 1 30 0 444 174 0 83 chr3 4683039 4683104 -222841474 - MLT1K LTR MaLR 0 588 536 527 185 0 22 chr3 4683104 4683239 -222841339 - L1MB8 LINE L1 -1 6177 6046 444 174 0 83 chr3 4683239 4683294 -222841284 - MLT1K LTR MaLR -52 536 478 966 280 56 41 chr3 4683321 4683664 -222840914 - MLT1K LTR MaLR -187 401 50 216 0 0 0 chr3 4683664 4683688 -222840890 + (TTA)n Simple_repeat Simple_repeat 2 25 0 966 280 56 41 chr3 4683688 4683737 -222840841 - MLT1K LTR MaLR -538 50 3 212 313 0 38 chr3 4683770 4683850 -222840728 + L2 LINE L2 3189 3265 -7 304 148 49 37 chr3 4684080 4684111 -222840467 - L1MC4 LINE L1 -1345 6697 6668 1695 113 118 136 chr3 4684111 4684218 -222840360 - Tigger2a DNA MER2_type -2274 434 327 233 29 0 29 chr3 4684218 4684253 -222840325 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1596 183 7 18 chr3 4684259 4684538 -222840040 - AluJo SINE Alu -30 282 7 1695 113 118 136 chr3 4684538 4684597 -222839981 - Tigger2a DNA MER2_type -2386 322 263 1779 159 10 17 chr3 4684597 4684893 -222839685 - AluJb SINE Alu -18 294 1 1695 113 118 136 chr3 4684893 4684935 -222839643 - Tigger2a DNA MER2_type -2445 263 222 2175 117 3 0 chr3 4684935 4685234 -222839344 - AluSx SINE Alu -12 300 1 1695 113 118 136 chr3 4685234 4685458 -222839120 - Tigger2a DNA MER2_type -2486 222 1 304 148 49 37 chr3 4685458 4685507 -222839071 - L1MC4 LINE L1 -1374 6668 6616 243 175 0 0 chr3 4686448 4686505 -222838073 + (CA)n Simple_repeat Simple_repeat 1 57 0 777 266 92 17 chr3 4688074 4688431 -222836147 - MER113 DNA MER1_type? -2 519 136 454 273 66 50 chr3 4688538 4688736 -222835842 - MIR SINE MIR -21 241 41 534 325 73 17 chr3 4689463 4689697 -222834881 + MIR SINE MIR 2 248 -14 1513 205 58 54 chr3 4691882 4692345 -222832233 + MLT1C LTR MaLR 2 466 -1 481 315 35 0 chr3 4692509 4692741 -222831837 - MER102a DNA MER1_type 0 330 91 2619 153 109 27 chr3 4693023 4693584 -222830994 - LTR36 LTR ERV1 -4 607 1 336 333 8 0 chr3 4693611 4693734 -222830844 + Tigger8 DNA MER2_type 530 653 -13 3168 134 23 72 chr3 4694737 4695315 -222829263 - LTR9 LTR ERV1 0 612 67 2516 43 0 0 chr3 4695315 4695616 -222828962 + AluY SINE Alu 1 301 -10 3168 134 23 72 chr3 4695616 4695680 -222828898 - LTR9 LTR ERV1 -545 67 1 1792 152 28 3 chr3 4695915 4696204 -222828374 + AluSx SINE Alu 1 296 -16 694 291 135 35 chr3 4696545 4696892 -222827686 - MLT1K LTR MaLR -73 515 134 2619 45 3 0 chr3 4697087 4697395 -222827183 + AluY SINE Alu 2 310 -1 906 241 97 28 chr3 4697706 4697922 -222826656 - MIR SINE MIR -30 232 2 23 68 0 0 chr3 4698188 4698232 -222826346 + AT_rich Low_complexity Low_complexity 1 44 0 827 194 104 15 chr3 4698477 4698678 -222825900 + MER20 DNA MER1_type 1 219 0 233 351 26 0 chr3 4698692 4698769 -222825809 - MIR SINE MIR -156 106 28 2093 146 0 0 chr3 4700052 4700354 -222824224 - AluJb SINE Alu -10 302 1 340 398 29 5 chr3 4700390 4700596 -222823982 - MIR SINE MIR -24 238 28 786 313 75 30 chr3 4700937 4701613 -222822965 - L2 LINE L2 -7 3306 2601 254 240 280 27 chr3 4703343 4703493 -222821085 - MIR3 SINE MIR -11 197 10 515 271 202 10 chr3 4704097 4704300 -222820278 + MIR SINE MIR 11 252 -10 193 284 60 0 chr3 4704325 4704392 -222820186 + MIR SINE MIR 166 236 -26 21 0 0 0 chr3 4705014 4705035 -222819543 + AT_rich Low_complexity Low_complexity 1 21 0 331 224 112 43 chr3 4705068 4705229 -222819349 - MER113 DNA MER1_type? -346 175 4 335 308 23 39 chr3 4707030 4707160 -222817418 + MER5A DNA MER1_type 57 184 -5 1113 208 47 7 chr3 4707170 4707439 -222817139 + MER58 DNA MER1_type 1 281 -56 2260 95 0 7 chr3 4707439 4707735 -222816843 - AluSq SINE Alu -15 298 5 407 158 37 0 chr3 4707750 4707832 -222816746 + MER58 DNA MER1_type 2320 2404 -16 21 36 0 0 chr3 4708484 4708512 -222816066 + AT_rich Low_complexity Low_complexity 1 28 0 261 83 0 0 chr3 4708734 4708770 -222815808 + (TA)n Simple_repeat Simple_repeat 2 37 0 291 324 94 25 chr3 4709787 4710099 -222814479 + L1MC/D LINE L1 5395 5729 -392 202 232 24 24 chr3 4710117 4710199 -222814379 + (TATAA)n Simple_repeat Simple_repeat 2 83 0 575 310 6 18 chr3 4712463 4712634 -222811944 + MER5A DNA MER1_type 16 184 -5 247 364 19 31 chr3 4712710 4712872 -222811706 - L2 LINE L2 -216 3056 2897 760 298 188 51 chr3 4713450 4713546 -222811032 + L3 LINE CR1 461 543 -1034 1129 158 50 180 chr3 4713546 4713963 -222810615 - MLT1A1 LTR MaLR 0 365 3 760 298 188 51 chr3 4713963 4714687 -222809891 + L3 LINE CR1 543 1393 -184 192 354 21 42 chr3 4714720 4714816 -222809762 + L3 LINE CR1 1464 1557 -20 198 103 0 0 chr3 4715006 4715035 -222809543 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 209 171 0 0 chr3 4716563 4716598 -222807980 + GA-rich Low_complexity Low_complexity 2 36 0 274 277 36 24 chr3 4716763 4716846 -222807732 + MIR3 SINE MIR 122 205 -3 2423 136 4 87 chr3 4717416 4717890 -222806688 + L1MB7 LINE L1 5680 6107 -77 1975 142 0 32 chr3 4717890 4718199 -222806379 - AluJb SINE Alu -13 299 1 2423 136 4 87 chr3 4718199 4718254 -222806324 + L1MB7 LINE L1 6107 6165 -19 284 266 273 7 chr3 4718662 4718816 -222805762 + MIR SINE MIR 3 197 -65 314 179 0 0 chr3 4719111 4719167 -222805411 - MLT-int LTR MaLR -993 742 687 1576 190 11 39 chr3 4719287 4719676 -222804902 - MLT1A1-int LTR MaLR -664 707 316 1366 174 10 49 chr3 4719686 4719991 -222804587 - MLT1A1 LTR MaLR -60 305 13 2203 62 42 10 chr3 4720027 4720315 -222804263 - AluY SINE Alu -14 297 1 253 298 164 35 chr3 4720328 4720499 -222804079 + L2 LINE L2 3120 3312 -1 198 301 68 45 chr3 4720826 4720959 -222803619 + MIR SINE MIR 9 144 -118 449 88 25 38 chr3 4722890 4722970 -222801608 + MADE1 DNA Mariner 2 80 0 272 227 57 11 chr3 4723414 4723502 -222801076 - HAL1 LINE L1 -1415 1092 1001 2544 34 0 0 chr3 4723577 4723872 -222800706 - AluY SINE Alu -16 295 1 1225 280 154 29 chr3 4723876 4724611 -222799967 - HAL1 LINE L1 -1596 911 85 306 153 0 0 chr3 4726017 4726076 -222798502 + (ATG)n Simple_repeat Simple_repeat 2 60 0 341 336 36 9 chr3 4726151 4726261 -222798317 - MIR SINE MIR -137 125 13 294 250 0 0 chr3 4726423 4726491 -222798087 - L2 LINE L2 -499 2815 2748 221 260 0 0 chr3 4726513 4726563 -222798015 - MIR SINE MIR 0 262 213 1572 127 0 5 chr3 4726583 4726804 -222797774 - AluSg/x SINE Alu -6 306 87 2230 118 3 0 chr3 4726826 4727130 -222797448 + AluSq SINE Alu 1 305 -8 330 345 25 49 chr3 4727269 4727472 -222797106 - MIR SINE MIR -44 218 21 360 0 0 0 chr3 4728187 4728227 -222796351 + (CA)n Simple_repeat Simple_repeat 2 41 0 289 206 29 49 chr3 4731900 4732002 -222792576 + L1MEd LINE L1 666 765 -5354 2703 231 46 34 chr3 4732790 4733433 -222791145 + L1MC4 LINE L1 6638 7292 -750 1814 153 43 10 chr3 4733433 4733734 -222790844 - AluSx SINE Alu -1 311 1 2703 231 46 34 chr3 4733734 4733804 -222790774 + L1MC4 LINE L1 7292 7360 -682 252 200 0 0 chr3 4733812 4733872 -222790706 + (TG)n Simple_repeat Simple_repeat 1 60 0 239 109 0 0 chr3 4733891 4733937 -222790641 + LTR66 LTR ERVL 394 439 -171 * 246 111 0 0 chr3 4733931 4733976 -222790602 - LTR66 LTR ERVL -171 439 395 465 220 60 22 chr3 4733981 4734125 -222790453 + L1MC4 LINE L1 7880 7994 -1 1554 292 179 16 chr3 4734707 4735513 -222789065 - L3 LINE CR1 -89 1488 552 1379 186 50 47 chr3 4735937 4736081 -222788497 + AluJo SINE Alu 1 143 -169 1562 186 0 62 chr3 4736081 4736404 -222788174 + AluSx SINE Alu 1 303 -9 1379 186 50 47 chr3 4736404 4736560 -222788018 + AluJo SINE Alu 143 302 -10 423 168 140 19 chr3 4738071 4738178 -222786400 + MIR SINE MIR 103 222 -40 207 0 0 0 chr3 4738524 4738547 -222786031 + (A)n Simple_repeat Simple_repeat 1 23 0 206 238 16 0 chr3 4739084 4739147 -222785431 + (GTTTG)n Simple_repeat Simple_repeat 1 64 0 23 33 0 0 chr3 4739460 4739490 -222785088 + AT_rich Low_complexity Low_complexity 1 30 0 335 217 105 28 chr3 4739684 4739827 -222784751 + L1ME4a LINE L1 5967 6120 -1 225 327 71 9 chr3 4740618 4740752 -222783826 - MIR SINE MIR -70 138 37 825 211 35 30 chr3 4741334 4741533 -222783045 - MER105 DNA DNA -4 200 1 216 285 89 32 chr3 4742890 4742945 -222781633 - MIR SINE MIR -1 261 211 1420 186 0 36 chr3 4742945 4743193 -222781385 - MER8 DNA MER2_type 0 239 1 216 285 89 32 chr3 4743193 4743260 -222781318 - MIR SINE MIR -51 211 132 199 331 67 18 chr3 4743483 4743647 -222780931 - MIR SINE MIR -67 141 23 963 233 69 25 chr3 4743790 4744035 -222780543 + MIR SINE MIR 7 262 0 282 311 49 8 chr3 4748339 4748461 -222776117 + L2 LINE L2 3187 3313 0 418 353 39 7 chr3 4748509 4748662 -222775916 + L2 LINE L2 3115 3272 0 1968 144 7 0 chr3 4749167 4749466 -222775112 + AluJb SINE Alu 1 301 -11 24 32 0 0 chr3 4749506 4749537 -222775041 + AT_rich Low_complexity Low_complexity 1 31 0 1821 147 14 7 chr3 4749710 4749996 -222774582 - AluJo SINE Alu -24 288 1 180 200 0 60 chr3 4750554 4750604 -222773974 + MIR SINE MIR 110 156 -106 1824 150 0 43 chr3 4750622 4750948 -222773630 + AluJb SINE Alu 1 312 0 227 261 54 43 chr3 4752380 4752472 -222772106 - MIR SINE MIR -67 195 103 2240 91 3 3 chr3 4754797 4755084 -222769494 + AluSp SINE Alu 12 298 -15 293 347 41 0 chr3 4755591 4755712 -222768866 + MIR3 SINE MIR 31 156 -52 270 185 174 0 chr3 4755715 4755807 -222768771 + MER113 DNA MER1_type? 4 111 -410 1775 152 20 10 chr3 4755821 4756117 -222768461 + AluJo SINE Alu 1 299 -13 609 229 100 26 chr3 4758418 4758756 -222765822 - MLT1G LTR MaLR -2 593 153 25767 64 4 9 chr3 4758775 4762096 -222762482 + L1P LINE L1 11 3315 -2831 1225 222 108 7 chr3 4762326 4762623 -222761955 - MER2 DNA MER2_type -13 332 6 213 39 0 0 chr3 4762633 4762659 -222761919 + (TC)n Simple_repeat Simple_repeat 2 27 0 * 375 60 0 0 chr3 4762658 4762708 -222761870 + (TG)n Simple_repeat Simple_repeat 1 50 0 278 149 21 0 chr3 4763104 4763151 -222761427 - Charlie8 DNA MER1_type -6 2411 2364 606 252 63 15 chr3 4763188 4763223 -222761355 - MIR SINE MIR -34 228 196 2223 120 0 0 chr3 4763223 4763524 -222761054 - AluSx SINE Alu -11 301 1 606 252 63 15 chr3 4763524 4763694 -222760884 - MIR SINE MIR -66 196 13 298 280 156 53 chr3 4763715 4763940 -222760638 - L2 LINE L2 -150 3163 2916 277 126 24 0 chr3 4764105 4764166 -222760412 - MSTC LTR MaLR -26 431 308 * 540 208 53 52 chr3 4764165 4764341 -222760237 - MSTC LTR MaLR -185 180 1 620 248 62 6 chr3 4764342 4764503 -222760075 - Charlie8 DNA MER1_type -2237 180 11 181 286 71 51 chr3 4764537 4764623 -222759955 - MIR SINE MIR -136 126 36 2360 99 3 0 chr3 4764623 4764925 -222759653 + AluSq SINE Alu 1 303 -10 181 286 71 51 chr3 4764925 4764936 -222759642 - MIR SINE MIR -226 36 27 * 613 255 28 0 chr3 4764927 4765072 -222759506 + MIR SINE MIR 27 175 -87 1687 112 31 5 chr3 4765090 4765314 -222759264 - MER30 DNA MER1_type 0 230 1 1135 178 28 0 chr3 4766053 4766233 -222758345 + MER5A DNA MER1_type 3 187 -2 702 191 112 27 chr3 4766357 4766545 -222758033 - MER20 DNA MER1_type 0 219 16 245 246 33 0 chr3 4766582 4766643 -222757935 + MER5B DNA MER1_type 116 178 0 2038 140 7 0 chr3 4767176 4767476 -222757102 - AluSx SINE Alu -10 302 1 303 250 70 20 chr3 4767485 4767585 -222756993 - MIR SINE MIR -77 185 81 879 225 69 23 chr3 4768749 4769011 -222755567 + L1MB4 LINE L1 5907 6180 0 362 280 32 0 chr3 4769021 4769146 -222755432 - L2 LINE L2 -991 2323 2195 571 275 6 25 chr3 4769734 4769894 -222754684 + MIR SINE MIR 34 190 -72 2096 90 54 0 chr3 4772448 4772726 -222751852 - AluSq SINE Alu -20 293 1 499 222 104 22 chr3 4773093 4773228 -222751350 + L2 LINE L2 3122 3267 -5 197 363 12 25 chr3 4774757 4774837 -222749741 + MIR SINE MIR 2 80 -182 2255 128 0 0 chr3 4775976 4776281 -222748297 + AluSg SINE Alu 1 305 -5 202 358 0 0 chr3 4776550 4776617 -222747961 - L2 LINE L2 -1 3271 3205 311 327 58 13 chr3 4776754 4776910 -222747668 - MIR SINE MIR -88 174 12 213 121 0 0 chr3 4776948 4776981 -222747597 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 552 188 240 19 chr3 4777159 4777313 -222747265 - MER53 DNA DNA 0 189 2 2330 98 7 0 chr3 4777573 4777880 -222746698 - AluSp SINE Alu -4 309 1 325 246 144 8 chr3 4778150 4778268 -222746310 - L2 LINE L2 -10 3303 3170 848 223 36 16 chr3 4778519 4778712 -222745866 + MER58A DNA MER1_type 19 215 -9 1747 128 7 40 chr3 4778712 4779009 -222745569 + AluJb SINE Alu 13 299 -13 180 406 82 30 chr3 4779563 4779635 -222744943 - L2 LINE L2 -79 3193 3126 2138 101 0 3 chr3 4779635 4779931 -222744647 + AluSc SINE Alu 1 295 -14 180 406 82 30 chr3 4779931 4780225 -222744353 - L2 LINE L2 -146 3126 2808 212 302 52 10 chr3 4780310 4780406 -222744172 - L2 LINE L2 -652 2662 2563 412 292 93 83 chr3 4781533 4781834 -222742744 - L2 LINE L2 -9 3263 2960 821 209 12 6 chr3 4782234 4782397 -222742181 + MER5A DNA MER1_type 1 164 -25 1632 169 6 49 chr3 4782433 4782758 -222741820 + AluJo SINE Alu 1 311 -1 185 260 20 0 chr3 4782953 4783003 -222741575 + MIR SINE MIR 104 154 -108 270 0 0 0 chr3 4783774 4783804 -222740774 + (TC)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr3 4784536 4784558 -222740020 + AT_rich Low_complexity Low_complexity 1 22 0 2392 88 0 7 chr3 4784719 4785025 -222739553 - AluSg SINE Alu -6 304 1 262 267 150 0 chr3 4785087 4785207 -222739371 - L1ME LINE L1 -279 5842 5705 226 386 30 0 chr3 4785272 4785373 -222739205 - L2 LINE L2 0 3272 3169 718 158 79 0 chr3 4785487 4785601 -222738977 + FLAM_C SINE Alu 2 124 -19 270 0 0 0 chr3 4785697 4785727 -222738851 + (TG)n Simple_repeat Simple_repeat 2 31 0 1683 195 7 0 chr3 4785728 4786020 -222738558 - AluJb SINE Alu -18 294 1 2149 98 28 0 chr3 4786768 4787054 -222737524 + AluSx SINE Alu 1 294 -18 1298 181 42 0 chr3 4787482 4787697 -222736881 + MER58A DNA MER1_type 1 224 0 1984 221 47 10 chr3 4787715 4788222 -222736356 + L1M4 LINE L1 4413 4938 -1208 309 350 57 13 chr3 4788380 4788537 -222736041 - MIR3 SINE MIR 0 208 45 876 169 0 0 chr3 4788620 4788750 -222735828 + FLAM_A SINE Alu 3 132 -1 2208 114 23 0 chr3 4789334 4789633 -222734945 - AluJb SINE Alu -6 306 1 2069 130 0 3 chr3 4789735 4790028 -222734550 - AluSg SINE Alu -16 294 3 395 283 145 0 chr3 4790842 4790980 -222733598 + MIR SINE MIR 40 197 -65 930 37 0 0 chr3 4791434 4791542 -222733036 - L1PA4 LINE L1 -2 6153 6046 1883 143 4 4 chr3 4791616 4791896 -222732682 + AluSx SINE Alu 1 280 -32 358 306 73 8 chr3 4792072 4792196 -222732382 - L2 LINE L2 0 3272 3141 2331 103 0 3 chr3 4792682 4792984 -222731594 + AluSx SINE Alu 1 301 -11 340 315 109 25 chr3 4793331 4793569 -222731009 + L2 LINE L2 2232 2489 -825 280 226 252 9 chr3 4793670 4793785 -222730793 + MIR3 SINE MIR 40 182 -26 1978 140 13 0 chr3 4793884 4794191 -222730387 + AluSx SINE Alu 1 311 -1 642 250 152 10 chr3 4794312 4794516 -222730062 - MIR SINE MIR -14 248 16 1814 185 0 3 chr3 4794828 4795126 -222729452 - AluJo SINE Alu -15 297 1 283 237 140 18 chr3 4796793 4796907 -222727671 + MIR3 SINE MIR 1 128 -80 201 211 0 0 chr3 4797544 4797596 -222726982 + (TG)n Simple_repeat Simple_repeat 1 52 0 1873 131 16 26 chr3 4797897 4798203 -222726375 + AluSx SINE Alu 1 303 -9 557 212 247 6 chr3 4798203 4798373 -222726205 + MIR SINE MIR 51 261 -1 351 278 32 24 chr3 4798823 4798949 -222725629 + MIR SINE MIR 20 146 -116 812 84 0 19 chr3 4800703 4800810 -222723768 + FLAM_A SINE Alu 22 126 -16 3562 119 12 2 chr3 4800850 4801356 -222723222 + L1PB3 LINE L1 5644 6154 0 205 283 47 47 chr3 4801692 4801798 -222722780 + MIR SINE MIR 69 174 -88 232 222 123 0 chr3 4802397 4802478 -222722100 - MIR3 SINE MIR -16 192 102 194 300 14 29 chr3 4802668 4802738 -222721840 - MIR SINE MIR -120 88 20 285 217 0 17 chr3 4803363 4803423 -222721155 + MER91 DNA MER1_type 2 60 -80 1881 72 103 4 chr3 4803777 4804039 -222720539 - AluSc SINE Alu -17 292 5 212 315 23 62 chr3 4804110 4804239 -222720339 + MIR SINE MIR 2 133 -75 22 0 0 0 chr3 4804274 4804296 -222720282 + AT_rich Low_complexity Low_complexity 1 22 0 2531 57 0 22 chr3 4804685 4805003 -222719575 - AluY SINE Alu 0 311 1 314 245 96 11 chr3 4805285 4805379 -222719199 - MER69A DNA AcHobo 0 177 76 1798 191 68 28 chr3 4805379 4805580 -222718998 + L1MD2 LINE L1 5944 6135 -224 2225 113 3 0 chr3 4805580 4805890 -222718688 + AluSx SINE Alu 1 311 -1 1798 191 68 28 chr3 4805890 4806087 -222718491 + L1MD2 LINE L1 6135 6358 -1 248 307 44 18 chr3 4806092 4806206 -222718372 - MER69A DNA AcHobo -60 117 1 225 352 38 52 chr3 4807031 4807241 -222717337 + L2 LINE L2 2564 2770 -544 549 271 84 67 chr3 4807433 4807732 -222716846 + MER5C DNA MER1_type 21 324 0 530 241 195 0 chr3 4808008 4808182 -222716396 + MIR SINE MIR 49 256 -6 3547 152 48 2 chr3 4808237 4808843 -222715735 - L1MB3 LINE L1 0 6183 5550 2130 116 3 16 chr3 4808844 4809154 -222715424 - AluSx SINE Alu -3 309 4 242 253 24 60 chr3 4809940 4810023 -222714555 + MIR SINE MIR 48 127 -81 2442 77 0 3 chr3 4810127 4810437 -222714141 + AluY SINE Alu 1 309 -2 206 310 113 0 chr3 4810563 4810634 -222713944 - MIR SINE MIR -155 107 29 760 222 102 9 chr3 4810983 4811199 -222713379 - MIR SINE MIR -13 249 14 999 190 20 20 chr3 4811639 4811839 -222712739 + MER20 DNA MER1_type 1 200 -19 210 333 0 43 chr3 4811898 4811967 -222712611 + L3 LINE CR1 1508 1573 -4 2003 140 10 0 chr3 4812542 4812835 -222711743 - AluSx SINE Alu -16 296 1 339 314 58 19 chr3 4813031 4813187 -222711391 + MIR3 SINE MIR 39 200 -8 939 117 7 15 chr3 4813345 4813482 -222711096 + AluJb SINE Alu 1 136 -176 1915 163 0 0 chr3 4813482 4813770 -222710808 + AluJb SINE Alu 6 293 -19 261 0 0 0 chr3 4813789 4813818 -222710760 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2169 100 7 0 chr3 4813820 4814100 -222710478 - AluSx SINE Alu -30 282 1 257 109 455 0 chr3 4814551 4814606 -222709972 - MADE1 DNA Mariner 0 80 1 1848 146 35 0 chr3 4814995 4815111 -222709467 + AluSx SINE Alu 1 112 -200 414 0 0 0 chr3 4815111 4815157 -222709421 + (TAA)n Simple_repeat Simple_repeat 2 47 0 1848 146 35 0 chr3 4815157 4815328 -222709250 + AluSx SINE Alu 112 298 -14 424 246 53 18 chr3 4816352 4816466 -222708112 - MIR3 SINE MIR -77 131 14 1263 124 0 43 chr3 4817129 4817315 -222707263 - AluSx SINE Alu -134 178 1 685 224 39 86 chr3 4817446 4817701 -222706877 - MER112 DNA MER1_type -12 248 6 299 269 86 30 chr3 4817788 4818022 -222706556 - L1ME4a LINE L1 -2 6119 5873 1029 186 9 24 chr3 4818116 4818184 -222706394 - MER3 DNA MER1_type -1 208 141 1936 143 7 7 chr3 4818184 4818471 -222706107 - AluSx SINE Alu -25 287 1 1029 186 9 24 chr3 4818471 4818612 -222705966 - MER3 DNA MER1_type -68 141 2 227 393 57 0 chr3 4820202 4820324 -222704254 - MIR SINE MIR -113 149 21 261 0 0 0 chr3 4821521 4821550 -222703028 + (CAA)n Simple_repeat Simple_repeat 2 30 0 276 284 0 68 chr3 4822736 4822824 -222701754 + L2 LINE L2 3168 3249 -23 2256 97 0 3 chr3 4825619 4825908 -222698670 - AluSx SINE Alu -24 288 1 193 192 154 19 chr3 4825928 4825980 -222698598 - L2 LINE L2 -3 3310 3252 185 0 0 39 chr3 4826067 4826093 -222698485 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2196 108 0 7 chr3 4826197 4826494 -222698084 - AluSq SINE Alu -18 295 1 376 249 115 91 chr3 4826741 4826935 -222697643 + L1ME4a LINE L1 5631 5834 -287 1887 135 7 0 chr3 4826935 4827216 -222697362 - AluSg SINE Alu -15 295 13 376 249 115 91 chr3 4827216 4827274 -222697304 + L1ME4a LINE L1 5834 5889 -232 273 180 16 141 chr3 4827362 4827490 -222697088 - MLT1H LTR MaLR 0 549 438 2054 181 57 53 chr3 4827911 4828180 -222696398 + L1MB8 LINE L1 4789 5055 -1091 2267 110 0 10 chr3 4828180 4828489 -222696089 - AluSx SINE Alu -1 311 6 2054 181 57 53 chr3 4828489 4828614 -222695964 + L1MB8 LINE L1 5055 5178 -968 2055 121 4 4 chr3 4828614 4828916 -222695662 + AluSx SINE Alu 1 302 0 2054 181 57 53 chr3 4828916 4829044 -222695534 + L1MB8 LINE L1 5178 5316 -830 833 199 6 0 chr3 4829046 4829202 -222695376 + FRAM SINE Alu 1 40 0 4484 182 19 25 chr3 4829205 4830085 -222694493 + L1MB8 LINE L1 5304 6178 0 2004 137 0 22 chr3 4830366 4830681 -222693897 - AluSx SINE Alu -2 310 3 216 165 22 114 chr3 4830796 4830901 -222693677 - MIR SINE MIR -62 146 56 21 36 0 0 chr3 4831103 4831131 -222693447 + AT_rich Low_complexity Low_complexity 1 28 0 1857 158 18 0 chr3 4831135 4831419 -222693159 - AluJo SINE Alu -23 289 1 863 168 0 0 chr3 4832279 4832404 -222692174 - AluJb SINE Alu -187 125 1 1544 192 3 36 chr3 4832448 4832756 -222691822 - AluJo SINE Alu -14 298 1 2275 104 0 0 chr3 4832979 4833277 -222691301 + AluSx SINE Alu 12 309 -3 672 178 8 0 chr3 4833486 4833604 -222690974 + MLT1D LTR MaLR 387 505 0 499 258 141 0 chr3 4833944 4834107 -222690471 + MIR SINE MIR 32 217 -45 180 77 0 0 chr3 4834195 4834221 -222690357 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1752 139 58 41 chr3 4834560 4834855 -222689723 - AluSx SINE Alu -12 300 1 2761 229 23 76 chr3 4835321 4835370 -222689208 - L1ME1 LINE L1 -6 6160 6110 1870 135 153 42 chr3 4835370 4835681 -222688897 + MSTA LTR MaLR 1 365 -63 2467 49 0 30 chr3 4835681 4835986 -222688592 - AluY SINE Alu -15 296 1 1870 135 153 42 chr3 4835986 4836059 -222688519 + MSTA LTR MaLR 365 428 0 2761 229 23 76 chr3 4836059 4836242 -222688336 - L1ME1 LINE L1 -56 6110 5919 2217 112 0 0 chr3 4836242 4836536 -222688042 - AluSg SINE Alu -16 294 1 2761 229 23 76 chr3 4836536 4837039 -222687539 - L1ME1 LINE L1 -247 5919 5391 2077 131 7 0 chr3 4837039 4837330 -222687248 + AluSg SINE Alu 1 293 -17 2761 229 23 76 chr3 4837330 4837389 -222687189 - L1ME1 LINE L1 -775 5391 5408 1524 175 39 39 chr3 4837389 4837674 -222686904 - AluJb SINE Alu -27 285 1 2761 229 23 76 chr3 4837674 4837732 -222686846 - L1ME1 LINE L1 -757 5409 5350 2800 252 61 25 chr3 4837776 4838804 -222685774 - L1ME1 LINE L1 -1790 4356 3292 266 50 25 0 chr3 4838839 4838879 -222685699 + (TC)n Simple_repeat Simple_repeat 1 41 0 932 213 189 7 chr3 4838879 4838955 -222685623 - MER2 DNA MER2_type 0 344 283 2335 92 0 0 chr3 4838955 4839250 -222685328 + AluSx SINE Alu 5 299 -13 932 213 189 7 chr3 4839250 4839464 -222685114 - MER2 DNA MER2_type -61 283 1 1863 97 37 23 chr3 4840022 4840322 -222684256 + AluSq SINE Alu 1 304 -9 4588 91 21 21 chr3 4841929 4842388 -222682190 - PABL_A LTR ERV1 -9 651 190 2371 93 0 7 chr3 4842388 4842698 -222681880 + AluSx SINE Alu 1 308 -4 4588 91 21 21 chr3 4842698 4842889 -222681689 - PABL_A LTR ERV1 -469 191 1 23 0 0 0 chr3 4843360 4843383 -222681195 + AT_rich Low_complexity Low_complexity 1 23 0 580 99 148 10 chr3 4843388 4843489 -222681089 - FLAM_C SINE Alu -24 119 5 862 131 77 0 chr3 4843538 4843668 -222680910 + FRAM SINE Alu 20 159 -17 253 354 20 0 chr3 4843878 4843977 -222680601 - MIR SINE MIR -154 108 8 479 236 48 36 chr3 4844265 4844430 -222680148 + MER5B DNA MER1_type 11 177 -1 775 143 80 166 chr3 4844657 4844872 -222679706 - MER33 DNA MER1_type -2265 320 145 1735 167 20 7 chr3 4844872 4845166 -222679412 + AluJb SINE Alu 1 298 -14 775 143 80 166 chr3 4845166 4845300 -222679278 - MER33 DNA MER1_type -2440 145 1 8138 14 0 0 chr3 4845536 4846769 -222677809 + L1HS LINE L1 4923 6155 0 226 229 0 0 chr3 4846771 4846832 -222677746 + A-rich Low_complexity Low_complexity 1 61 0 1678 151 17 31 chr3 4847352 4847643 -222676935 + AluJb SINE Alu 9 295 -17 305 265 34 23 chr3 4848637 4848766 -222675812 - MIR SINE MIR -58 150 20 480 218 247 6 chr3 4849200 4849370 -222675208 - MIR SINE MIR -1 261 51 1747 137 17 30 chr3 4849370 4849669 -222674909 - AluSx SINE Alu -9 303 9 8206 61 2 2 chr3 4849979 4851026 -222673552 + L1P LINE L1 1098 2144 -4002 325 116 0 0 chr3 4851360 4851419 -222673159 + Alu SINE Alu 1 40 -261 654 125 0 0 chr3 4851419 4851515 -222673063 + AluSg/x SINE Alu 208 303 -9 180 152 0 0 chr3 4852080 4852113 -222672465 + (CAT)n Simple_repeat Simple_repeat 1 33 0 753 135 0 0 chr3 4852301 4852412 -222672166 + MLT2A1 LTR ERVL 288 398 -46 457 196 17 12 chr3 4852428 4852601 -222671977 + (TA)n Simple_repeat Simple_repeat 2 175 0 310 279 23 0 chr3 4852604 4852690 -222671888 - L1MC4 LINE L1 -1340 6702 6615 453 147 0 0 chr3 4852691 4852786 -222671792 + (TA)n Simple_repeat Simple_repeat 2 96 0 415 73 0 0 chr3 4852794 4852849 -222671729 + MLT2A2 LTR ERVL 399 453 0 3773 177 29 2 chr3 4852851 4853474 -222671104 + MER52-int LTR ERV1 2400 3039 -4052 21 71 0 0 chr3 4853626 4853668 -222670910 + AT_rich Low_complexity Low_complexity 1 42 0 2533 119 3 13 chr3 4853788 4854167 -222670411 + THE1C LTR MaLR 1 375 0 2924 93 82 102 chr3 4854167 4854694 -222669884 + THE1C-int LTR MaLR 1 516 -1064 9235 45 4 0 chr3 4854818 4855948 -222668630 - L1P LINE L1 -1184 4962 3828 26 30 0 0 chr3 4856697 4856730 -222667848 + AT_rich Low_complexity Low_complexity 1 33 0 1863 97 37 23 chr3 4857980 4858280 -222666298 - AluSq SINE Alu -9 304 1 930 213 189 7 chr3 4858838 4859052 -222665526 + MER2 DNA MER2_type 1 283 -61 2335 92 0 0 chr3 4859052 4859347 -222665231 - AluSx SINE Alu -13 299 5 930 213 189 7 chr3 4859347 4859423 -222665155 + MER2 DNA MER2_type 283 344 0 308 64 21 0 chr3 4859423 4859470 -222665108 + (GA)n Simple_repeat Simple_repeat 1 48 0 2948 249 57 23 chr3 4859498 4860528 -222664050 + L1ME1 LINE L1 3292 4356 -1790 2777 231 45 80 chr3 4860572 4860630 -222663948 + L1ME1 LINE L1 5353 5412 -754 1536 193 14 14 chr3 4860630 4860915 -222663663 + AluJb SINE Alu 1 285 -27 2777 231 45 80 chr3 4860915 4860977 -222663601 + L1ME1 LINE L1 5412 5475 -691 1812 165 7 0 chr3 4860977 4861268 -222663310 - AluSg SINE Alu -17 293 1 2777 231 45 80 chr3 4861268 4861771 -222662807 + L1ME1 LINE L1 5475 5994 -172 2215 113 0 0 chr3 4861771 4862064 -222662514 + AluSg SINE Alu 1 293 -17 2777 231 45 80 chr3 4862064 4862247 -222662331 + L1ME1 LINE L1 5994 6111 -55 1817 140 153 42 chr3 4862247 4862320 -222662258 - MSTA LTR MaLR 0 428 365 2463 52 0 29 chr3 4862320 4862626 -222661952 + AluY SINE Alu 1 297 -14 1817 140 153 42 chr3 4862626 4862937 -222661641 - MSTA LTR MaLR -63 365 1 2777 231 45 80 chr3 4862937 4862986 -222661592 + L1ME1 LINE L1 6111 6160 -6 1752 139 58 41 chr3 4863452 4863747 -222660831 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr3 4864086 4864112 -222660466 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 499 258 141 0 chr3 4864200 4864363 -222660215 - MIR SINE MIR -45 217 32 672 178 8 0 chr3 4864703 4864821 -222659757 - MLT1D LTR MaLR 0 505 387 2176 99 51 0 chr3 4865030 4865324 -222659254 - AluSx SINE Alu -3 309 1 426 230 104 22 chr3 4865692 4865827 -222658751 + L2 LINE L2 3122 3267 -5 2272 128 0 0 chr3 4868573 4868878 -222655700 + AluSg SINE Alu 1 305 -5 184 358 0 0 chr3 4869147 4869214 -222655364 - L2 LINE L2 -1 3271 3205 267 315 63 14 chr3 4869364 4869507 -222655071 - MIR SINE MIR -101 161 12 213 121 0 0 chr3 4869545 4869578 -222655000 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 537 188 240 19 chr3 4869756 4869910 -222654668 - MER53 DNA DNA 0 189 2 2330 101 7 0 chr3 4870170 4870478 -222654100 - AluSp SINE Alu -3 310 1 287 246 144 8 chr3 4870748 4870866 -222653712 - L2 LINE L2 -10 3303 3170 845 223 36 16 chr3 4871117 4871310 -222653268 + MER58A DNA MER1_type 19 215 -9 1759 128 7 40 chr3 4871310 4871607 -222652971 + AluJb SINE Alu 13 299 -13 2163 101 0 3 chr3 4872233 4872529 -222652049 + AluSc SINE Alu 1 295 -14 183 302 52 10 chr3 4872908 4873004 -222651574 - L2 LINE L2 -652 2662 2563 322 292 93 83 chr3 4874131 4874432 -222650146 - L2 LINE L2 -9 3263 2960 768 209 12 6 chr3 4874832 4874995 -222649583 + MER5A DNA MER1_type 1 164 -25 1493 182 10 42 chr3 4875031 4875344 -222649234 + AluJo SINE Alu 1 303 -9 1446 145 0 0 chr3 4876439 4876660 -222647918 + L1PB3 LINE L1 5934 6154 0 208 235 123 0 chr3 4877703 4877784 -222646794 - MIR3 SINE MIR -16 192 102 1899 72 103 4 chr3 4879082 4879344 -222645234 - AluSc SINE Alu -17 292 5 22 0 0 0 chr3 4879579 4879601 -222644977 + AT_rich Low_complexity Low_complexity 1 22 0 2350 72 6 28 chr3 4879991 4880309 -222644269 - AluY SINE Alu 0 311 1 240 234 261 0 chr3 4880412 4880523 -222644055 - MIR3 SINE MIR -29 179 40 279 315 109 25 chr3 4880624 4880862 -222643716 - L2 LINE L2 -825 2489 2232 2307 104 0 3 chr3 4881209 4881508 -222643070 - AluSx SINE Alu -14 298 1 320 316 18 9 chr3 4882004 4882118 -222642460 + L2 LINE L2 3158 3272 0 1875 149 3 3 chr3 4882292 4882574 -222642004 - AluSx SINE Alu -30 282 1 890 45 0 0 chr3 4882648 4882758 -222641820 + L1PA4 LINE L1 6046 6155 0 355 283 145 0 chr3 4883210 4883348 -222641230 - MIR SINE MIR -65 197 40 2090 130 0 3 chr3 4884160 4884453 -222640125 + AluSg SINE Alu 3 294 -16 2222 114 23 0 chr3 4884555 4884854 -222639724 + AluJb SINE Alu 1 306 -6 826 169 0 0 chr3 4885438 4885568 -222639010 - FLAM_A SINE Alu -1 132 3 264 350 57 13 chr3 4885651 4885808 -222638770 + MIR3 SINE MIR 45 208 0 1951 223 47 10 chr3 4885966 4886473 -222638105 - L1M4 LINE L1 -1208 4938 4413 1221 181 42 0 chr3 4886491 4886706 -222637872 - MER58A DNA MER1_type 0 224 1 1300 304 170 13 chr3 4886917 4887711 -222636867 - L3 LINE CR1 -107 1470 552 1387 186 50 47 chr3 4888135 4888279 -222636299 + AluJo SINE Alu 1 143 -169 1468 198 0 62 chr3 4888279 4888602 -222635976 + AluSx SINE Alu 1 303 -9 1387 186 50 47 chr3 4888602 4888758 -222635820 + AluJo SINE Alu 143 302 -10 373 157 157 0 chr3 4890287 4890376 -222634202 + MIR SINE MIR 120 222 -40 207 0 0 0 chr3 4890721 4890744 -222633834 + (A)n Simple_repeat Simple_repeat 1 23 0 206 238 16 0 chr3 4891282 4891345 -222633233 + (GTTTG)n Simple_repeat Simple_repeat 1 64 0 23 33 0 0 chr3 4891655 4891685 -222632893 + AT_rich Low_complexity Low_complexity 1 30 0 243 333 0 41 chr3 4892734 4892905 -222631673 + GA-rich Low_complexity Low_complexity 4 167 0 * 251 288 23 11 chr3 4892810 4892916 -222631662 + GA-rich Low_complexity Low_complexity 1 107 0 263 217 0 17 chr3 4893535 4893595 -222630983 - MER91 DNA MER1_type -1 139 81 1899 72 103 4 chr3 4893949 4894211 -222630367 - AluSc SINE Alu -17 292 5 186 310 0 69 chr3 4894307 4894394 -222630184 + MIR SINE MIR 33 113 -149 22 0 0 0 chr3 4894446 4894468 -222630110 + AT_rich Low_complexity Low_complexity 1 22 0 2568 53 0 22 chr3 4894858 4895176 -222629402 - AluY SINE Alu 0 311 1 309 245 96 11 chr3 4895458 4895552 -222629026 - MER69 DNA AcHobo 0 2526 2425 927 209 90 0 chr3 4895552 4895753 -222628825 + L1MD2 LINE L1 5944 6162 -197 2262 121 0 0 chr3 4895753 4896058 -222628520 + AluSp SINE Alu 1 305 -8 282 329 31 38 chr3 4896222 4896383 -222628195 - MIR SINE MIR -55 153 39 281 26 0 26 chr3 4897118 4897157 -222627421 + (CA)n Simple_repeat Simple_repeat 2 39 0 1543 113 0 18 chr3 4900540 4900761 -222623817 - AluSg SINE Alu -93 217 1 257 267 150 0 chr3 4900823 4900943 -222623635 - L1ME LINE L1 -279 5842 5705 189 346 30 20 chr3 4901006 4901107 -222623471 - L2 LINE L2 -2 3270 3169 657 167 79 0 chr3 4901221 4901335 -222623243 + FLAM_C SINE Alu 2 124 -19 396 0 0 0 chr3 4901431 4901475 -222623103 + (TG)n Simple_repeat Simple_repeat 2 45 0 1697 195 7 0 chr3 4901476 4901768 -222622810 - AluJb SINE Alu -18 294 1 2168 98 28 0 chr3 4902515 4902801 -222621777 + AluSx SINE Alu 1 294 -18 1221 181 42 0 chr3 4903229 4903444 -222621134 + MER58A DNA MER1_type 1 224 0 1960 221 47 10 chr3 4903462 4903969 -222620609 + L1M4 LINE L1 4413 4938 -1208 264 350 57 13 chr3 4904127 4904284 -222620294 - MIR3 SINE MIR 0 208 45 826 169 0 0 chr3 4904367 4904497 -222620081 + FLAM_A SINE Alu 3 132 -1 2222 114 23 0 chr3 4905081 4905380 -222619198 - AluJb SINE Alu -6 306 1 2206 106 7 0 chr3 4905484 4905777 -222618801 - AluSx SINE Alu -17 295 1 287 246 144 8 chr3 4906047 4906165 -222618413 - L2 LINE L2 -10 3303 3170 845 223 36 16 chr3 4906416 4906609 -222617969 + MER58A DNA MER1_type 19 215 -9 1759 128 7 40 chr3 4906609 4906906 -222617672 + AluJb SINE Alu 13 299 -13 2163 101 0 3 chr3 4907532 4907828 -222616750 + AluSc SINE Alu 1 295 -14 183 302 52 10 chr3 4908207 4908303 -222616275 - L2 LINE L2 -652 2662 2563 322 292 93 83 chr3 4909430 4909731 -222614847 - L2 LINE L2 -9 3263 2960 768 209 12 6 chr3 4910131 4910294 -222614284 + MER5A DNA MER1_type 1 164 -25 1636 169 6 49 chr3 4910330 4910655 -222613923 + AluJo SINE Alu 1 311 -1 270 0 0 0 chr3 4911671 4911701 -222612877 + (TC)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr3 4912433 4912455 -222612123 + AT_rich Low_complexity Low_complexity 1 22 0 2497 91 0 0 chr3 4912616 4912925 -222611653 - AluSg SINE Alu -1 309 1 257 267 150 0 chr3 4912987 4913107 -222611471 - L1ME LINE L1 -279 5842 5705 201 386 30 0 chr3 4913172 4913273 -222611305 - L2 LINE L2 0 3272 3169 680 149 79 0 chr3 4913387 4913501 -222611077 + FLAM_C SINE Alu 2 124 -19 216 0 0 0 chr3 4913597 4913621 -222610957 + (TG)n Simple_repeat Simple_repeat 2 25 0 1697 195 7 0 chr3 4913622 4913914 -222610664 - AluJb SINE Alu -18 294 1 2168 98 28 0 chr3 4914662 4914948 -222609630 + AluSx SINE Alu 1 294 -18 24 53 0 0 chr3 4915786 4915824 -222608754 + AT_rich Low_complexity Low_complexity 1 38 0 239 119 0 51 chr3 4917895 4917954 -222606624 + (CTA)n Simple_repeat Simple_repeat 1 56 0 383 246 53 18 chr3 4918577 4918691 -222605887 + MIR3 SINE MIR 14 131 -77 1871 146 35 0 chr3 4919715 4919886 -222604692 - AluSx SINE Alu -14 298 112 414 0 0 0 chr3 4919886 4919932 -222604646 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1871 146 35 0 chr3 4919932 4920048 -222604530 - AluSx SINE Alu -200 112 1 253 109 455 0 chr3 4920437 4920492 -222604086 + MADE1 DNA Mariner 1 80 0 2193 100 7 0 chr3 4920943 4921254 -222603324 + AluSx SINE Alu 1 313 0 1934 163 0 0 chr3 4921273 4921561 -222603017 - AluJb SINE Alu -19 293 6 986 124 0 7 chr3 4921561 4921698 -222602880 - AluJb SINE Alu -176 136 1 301 136 0 0 chr3 4921698 4921742 -222602836 - Alu SINE Alu -258 44 1 * 560 134 93 64 chr3 4921742 4921913 -222602665 + Charlie5 DNA MER1_type 2445 2620 0 479 236 48 36 chr3 4922140 4922305 -222602273 - MER5B DNA MER1_type -1 177 11 238 301 27 0 chr3 4922600 4922673 -222601905 + MIR SINE MIR 8 82 -180 862 131 77 0 chr3 4922909 4923039 -222601539 - FRAM SINE Alu -17 159 20 555 109 148 10 chr3 4923088 4923189 -222601389 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 4923194 4923217 -222601361 + AT_rich Low_complexity Low_complexity 1 23 0 4655 90 17 21 chr3 4923688 4923882 -222600696 + PABL_A LTR ERV1 1 194 -466 2261 94 0 7 chr3 4923882 4924179 -222600399 - AluSx SINE Alu -17 295 1 4655 90 17 21 chr3 4924179 4924638 -222599940 + PABL_A LTR ERV1 194 651 -9 1244 148 0 0 chr3 4926074 4926257 -222598321 - AluSg/x SINE Alu -16 296 114 195 298 48 24 chr3 4926426 4926510 -222598068 + MIR SINE MIR 155 240 -22 2004 145 0 16 chr3 4926532 4926835 -222597743 - AluSx SINE Alu -14 298 1 29 0 0 0 chr3 4926835 4926864 -222597714 + AT_rich Low_complexity Low_complexity 1 29 0 515 277 141 5 chr3 4927384 4927590 -222596988 - MIR SINE MIR -6 256 23 1595 142 47 4 chr3 4927606 4927972 -222596606 + LTR47A LTR ERVL 1 436 -16 1818 169 156 5 chr3 4927972 4928344 -222596234 - MSTA LTR MaLR 0 428 1 1595 142 47 4 chr3 4928344 4928362 -222596216 + LTR47A LTR ERVL 436 452 0 316 293 75 34 chr3 4928376 4928523 -222596055 + LTR47A-int LTR ERVL 15 167 -5176 685 171 43 41 chr3 4928665 4928859 -222595719 + LTR49-int LTR ERV1 2009 2290 -2590 1570 181 4 0 chr3 4928876 4929157 -222595421 + MER41B LTR ERV1 1 282 -353 4746 221 83 39 chr3 4929160 4929381 -222595197 + LTR49-int LTR ERV1 891 1101 -3090 836 134 0 30 chr3 4929381 4929539 -222595039 + FLAM_C SINE Alu 1 154 0 4746 221 83 39 chr3 4929539 4930538 -222594040 + LTR49-int LTR ERV1 1101 2165 -2026 2207 64 37 7 chr3 4930538 4930833 -222593745 + MLT2A1 LTR ERVL 1 304 -140 261 0 0 0 chr3 4930853 4930882 -222593696 + (CA)n Simple_repeat Simple_repeat 2 30 0 390 36 18 18 chr3 4930886 4930941 -222593637 + MLT2A1 LTR ERVL 399 453 0 4568 148 38 67 chr3 4930942 4932423 -222592155 + LTR49-int LTR ERV1 4411 6064 -258 2338 145 133 2 chr3 4932435 4932835 -222591743 + LTR47A LTR ERVL 1 452 0 244 206 72 52 chr3 4934274 4934371 -222590207 + MLT1J2 LTR MaLR 42 140 -310 1519 174 98 113 chr3 4934639 4934853 -222589725 + MLT1D LTR MaLR 1 217 -288 3356 160 6 2 chr3 4934853 4935378 -222589200 + MER1A DNA MER1_type 1 527 0 1519 174 98 113 chr3 4935378 4935676 -222588902 + MLT1D LTR MaLR 217 505 0 323 291 122 17 chr3 4935766 4935938 -222588640 - MIR SINE MIR 0 262 73 3887 113 24 5 chr3 4936009 4936600 -222587978 + LTR43 LTR ERV1 1 602 0 216 318 53 60 chr3 4937223 4937295 -222587283 + MIR SINE MIR 72 143 -119 2288 83 48 0 chr3 4937295 4937584 -222586994 + AluSc SINE Alu 1 303 -6 216 318 53 60 chr3 4937584 4937662 -222586916 + MIR SINE MIR 143 221 -41 239 329 0 37 chr3 4938197 4938279 -222586299 + L2 LINE L2 3192 3270 -2 795 233 30 40 chr3 4938532 4938734 -222585844 + MIR SINE MIR 37 236 -26 1509 199 57 37 chr3 4938789 4938899 -222585679 + MLT2D LTR ERVL 1 107 -307 2370 60 0 13 chr3 4938899 4939198 -222585380 - AluY SINE Alu -16 295 1 1509 199 57 37 chr3 4939198 4939308 -222585270 + MLT2D LTR ERVL 107 213 -201 2488 193 23 69 chr3 4939308 4939949 -222584629 - LTR9 LTR ERV1 0 612 1 1509 199 57 37 chr3 4939949 4940130 -222584448 + MLT2D LTR ERVL 213 411 -3 1016 254 81 47 chr3 4940132 4940577 -222584001 + MLT1D LTR MaLR 46 505 0 2286 110 3 0 chr3 4941968 4942278 -222582300 + AluSx SINE Alu 1 311 -1 844 183 56 5 chr3 4942278 4942475 -222582103 + L1MD2 LINE L1 6152 6358 -1 259 348 38 52 chr3 4943419 4943629 -222580949 + L2 LINE L2 2564 2770 -544 557 268 87 70 chr3 4943821 4944120 -222580458 + MER5C DNA MER1_type 21 324 0 525 247 195 0 chr3 4944396 4944570 -222580008 + MIR SINE MIR 49 256 -6 3241 160 30 3 chr3 4944625 4945231 -222579347 - L1MB2 LINE L1 0 6171 5550 2135 116 3 16 chr3 4945232 4945542 -222579036 - AluSx SINE Alu -3 309 4 251 253 24 60 chr3 4946330 4946413 -222578165 + MIR SINE MIR 48 127 -81 2428 77 0 3 chr3 4946517 4946827 -222577751 + AluY SINE Alu 1 309 -2 575 177 9 18 chr3 4947074 4947187 -222577391 - MER58A DNA MER1_type 0 112 1 2073 105 28 0 chr3 4947615 4947901 -222576677 - AluSx SINE Alu -18 294 1 1819 142 7 0 chr3 4948342 4948624 -222575954 - AluSg SINE Alu -15 295 12 1527 198 3 36 chr3 4948847 4949155 -222575423 + AluJb SINE Alu 1 298 -14 870 168 0 0 chr3 4949199 4949324 -222575254 + AluJb SINE Alu 1 125 -187 920 107 15 7 chr3 4949952 4950797 -222573781 + HSATII Satellite Satellite 1 851 0 869 74 17 51 chr3 4950823 4950998 -222573580 + HSATII Satellite Satellite 1 169 -1 965 116 12 14 chr3 4951024 4952573 -222572005 + HSATII Satellite Satellite 1 1545 0 986 114 14 16 chr3 4952599 4954287 -222570291 + HSATII Satellite Satellite 1 1685 -27 965 117 8 15 chr3 4954309 4955979 -222568599 + HSATII Satellite Satellite 1 1658 -18 1015 88 6 18 chr3 4956019 4956190 -222568388 + HSATII Satellite Satellite 1 169 -1 953 129 3 16 chr3 4956539 4956894 -222567684 + HSATII Satellite Satellite 1 350 -1 998 118 12 14 chr3 4956924 4960156 -222564422 + HSATII Satellite Satellite 1 3225 -1 932 102 16 13 chr3 4960186 4960694 -222563884 + HSATII Satellite Satellite 1 509 -47 793 110 0 24 chr3 4960803 4961017 -222563561 + HSATII Satellite Satellite 1 208 -18 959 110 10 18 chr3 4961057 4962641 -222561937 + HSATII Satellite Satellite 1 1572 -121 977 117 14 14 chr3 4962663 4965725 -222558853 + HSATII Satellite Satellite 1 3060 -23 932 126 18 20 chr3 4965747 4966339 -222558239 + HSATII Satellite Satellite 1 590 0 1036 110 11 15 chr3 4966362 4971349 -222553229 + HSATII Satellite Satellite 1 4967 -1 998 108 12 9 chr3 4971379 4974452 -222550126 + HSATII Satellite Satellite 1 3084 -2 967 110 15 17 chr3 4974486 4976217 -222548361 + HSATII Satellite Satellite 1 1726 -3 977 113 13 12 chr3 4976231 4976736 -222547842 + HSATII Satellite Satellite 1 505 -1 959 111 16 12 chr3 4976774 4978381 -222546197 + HSATII Satellite Satellite 1 1614 0 959 107 7 16 chr3 4978404 4979520 -222545058 + HSATII Satellite Satellite 1 1105 -121 953 121 16 15 chr3 4979542 4981442 -222543136 + HSATII Satellite Satellite 1 1901 0 959 110 5 14 chr3 4981465 4982127 -222542451 + HSATII Satellite Satellite 1 656 -9 783 117 18 23 chr3 4982158 4982329 -222542249 + HSATII Satellite Satellite 1 170 0 911 122 12 19 chr3 4982354 4983196 -222541382 + HSATII Satellite Satellite 1 836 0 998 115 15 13 chr3 4983379 4987034 -222537544 + HSATII Satellite Satellite 1 3663 0 998 115 12 12 chr3 4987057 4989847 -222534731 + HSATII Satellite Satellite 1 2788 -99 386 300 55 9 chr3 4990328 4990438 -222534140 + L2 LINE L2 3153 3267 -5 1805 132 69 0 chr3 4990561 4990850 -222533728 - AluSx SINE Alu -3 309 1 477 290 95 68 chr3 4991021 4991242 -222533336 - MIR SINE MIR -34 228 2 359 337 53 60 chr3 4991243 4991633 -222532945 + L2 LINE L2 2686 3074 -198 1105 184 120 5 chr3 4993072 4993289 -222531289 + AluJb SINE Alu 58 299 -13 1702 187 33 3 chr3 4993430 4993729 -222530849 + AluJo SINE Alu 1 308 -4 875 144 0 41 chr3 4998722 4998868 -222525710 + AluSg/x SINE Alu 137 276 -36 753 215 7 0 chr3 4999123 4999272 -222525306 - L1 LINE L1 -1063 5083 4934 943 227 20 49 chr3 5000152 5000399 -222524179 + MIR SINE MIR 2 241 -21 1096 157 8 44 chr3 5001449 5001697 -222522881 - AluJb SINE Alu -5 307 69 22 56 0 0 chr3 5002005 5002041 -222522537 + GC_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 5002083 5002104 -222522474 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 5002108 5002132 -222522446 + GC_rich Low_complexity Low_complexity 1 24 0 36 26 0 0 chr3 5002177 5002215 -222522363 + GC_rich Low_complexity Low_complexity 1 38 0 487 125 0 12 chr3 5003631 5003711 -222520867 + AluS SINE Alu 227 305 -6 22 0 0 0 chr3 5003872 5003894 -222520684 + AT_rich Low_complexity Low_complexity 1 22 0 320 122 3 0 chr3 5003995 5004053 -222520525 + Alu SINE Alu 251 298 -4 2022 121 4 4 chr3 5004153 5004455 -222520123 + AluSx SINE Alu 1 302 0 664 148 16 0 chr3 5004455 5004583 -222519995 + L1MB8 LINE L1 5187 5316 -830 833 199 6 0 chr3 5004585 5004741 -222519837 + FRAM SINE Alu 1 40 0 4484 182 19 25 chr3 5004744 5005624 -222518954 + L1MB8 LINE L1 5304 6178 0 2004 137 0 22 chr3 5005905 5006220 -222518358 - AluSx SINE Alu -2 310 3 216 165 22 114 chr3 5006335 5006440 -222518138 - MIR SINE MIR -62 146 56 21 36 0 0 chr3 5006642 5006670 -222517908 + AT_rich Low_complexity Low_complexity 1 28 0 1845 158 18 0 chr3 5006674 5006958 -222517620 - AluJo SINE Alu -23 289 1 858 168 0 0 chr3 5007818 5007943 -222516635 - AluJb SINE Alu -187 125 1 1523 192 3 36 chr3 5007987 5008295 -222516283 - AluJo SINE Alu -14 298 1 2266 104 0 0 chr3 5008518 5008816 -222515762 + AluSx SINE Alu 12 309 -3 670 178 8 0 chr3 5009025 5009143 -222515435 + MLT1D LTR MaLR 387 505 0 546 278 131 0 chr3 5009483 5009659 -222514919 + MIR SINE MIR 32 230 -32 180 77 0 0 chr3 5009734 5009760 -222514818 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 1738 139 58 41 chr3 5010099 5010394 -222514184 - AluSx SINE Alu -12 300 1 2799 229 23 76 chr3 5010860 5010909 -222513669 - L1ME1 LINE L1 -6 6160 6110 2008 138 153 42 chr3 5010909 5011220 -222513358 + MSTA LTR MaLR 1 365 -63 2441 49 0 30 chr3 5011220 5011525 -222513053 - AluY SINE Alu -15 296 1 2008 138 153 42 chr3 5011525 5011598 -222512980 + MSTA LTR MaLR 365 428 0 2799 229 23 76 chr3 5011598 5011781 -222512797 - L1ME1 LINE L1 -56 6110 5919 2196 112 0 0 chr3 5011781 5012075 -222512503 - AluSg SINE Alu -16 294 1 2799 229 23 76 chr3 5012075 5012578 -222512000 - L1ME1 LINE L1 -247 5919 5391 2060 131 7 0 chr3 5012578 5012869 -222511709 + AluSg SINE Alu 1 293 -17 2799 229 23 76 chr3 5012869 5012928 -222511650 - L1ME1 LINE L1 -775 5391 5408 1508 175 39 39 chr3 5012928 5013213 -222511365 - AluJb SINE Alu -27 285 1 2799 229 23 76 chr3 5013213 5013271 -222511307 - L1ME1 LINE L1 -757 5409 5350 3013 251 57 23 chr3 5013315 5014345 -222510233 - L1ME1 LINE L1 -1790 4356 3292 272 70 23 0 chr3 5014373 5014416 -222510162 + (TC)n Simple_repeat Simple_repeat 1 44 0 1022 210 189 7 chr3 5014416 5014492 -222510086 - MER2 DNA MER2_type 0 344 283 2327 94 0 0 chr3 5014492 5014791 -222509787 + AluSx SINE Alu 5 303 -9 1022 210 189 7 chr3 5014791 5015005 -222509573 - MER2 DNA MER2_type -61 283 1 1798 100 37 23 chr3 5015563 5015863 -222508715 + AluSq SINE Alu 1 304 -9 4654 90 17 21 chr3 5017470 5017929 -222506649 - PABL_A LTR ERV1 -9 651 194 2233 94 0 7 chr3 5017929 5018226 -222506352 + AluSx SINE Alu 1 295 -17 4654 90 17 21 chr3 5018226 5018420 -222506158 - PABL_A LTR ERV1 -466 194 1 23 0 0 0 chr3 5018891 5018914 -222505664 + AT_rich Low_complexity Low_complexity 1 23 0 598 109 148 10 chr3 5018919 5019020 -222505558 - FLAM_C SINE Alu -24 119 5 854 131 77 0 chr3 5019069 5019199 -222505379 + FRAM SINE Alu 20 159 -17 264 375 17 0 chr3 5019388 5019508 -222505070 - MIR SINE MIR -133 129 8 533 236 48 36 chr3 5019803 5019968 -222504610 + MER5B DNA MER1_type 11 177 -1 833 129 103 189 chr3 5020195 5020410 -222504168 - MER33 DNA MER1_type -2265 320 145 1720 167 20 7 chr3 5020410 5020704 -222503874 + AluJb SINE Alu 1 298 -14 833 129 103 189 chr3 5020704 5020838 -222503740 - MER33 DNA MER1_type -2440 145 1 8077 14 2 0 chr3 5021074 5022304 -222502274 + L1HS LINE L1 4923 6154 -1 201 39 0 0 chr3 5022340 5022366 -222502212 + (A)n Simple_repeat Simple_repeat 1 26 0 1702 144 17 31 chr3 5022886 5023177 -222501401 + AluJb SINE Alu 9 295 -17 575 204 160 18 chr3 5024562 5024787 -222499791 - MER112 DNA MER1_type 0 260 4 1676 209 107 43 chr3 5025388 5025900 -222498678 - MER90 LTR ERV1 0 614 70 2096 141 13 0 chr3 5026253 5026558 -222498020 - AluJo SINE Alu -3 309 1 206 292 79 22 chr3 5026689 5026778 -222497800 + MIR3 SINE MIR 90 183 -25 1917 233 175 50 chr3 5027206 5028125 -222496453 - HAL1 LINE L1 -134 2373 1340 469 321 77 9 chr3 5028127 5028466 -222496112 - HAL1 LINE L1 -1216 1291 930 492 288 113 19 chr3 5028596 5028808 -222495770 - HAL1 LINE L1 -1842 665 434 204 342 57 19 chr3 5029150 5029308 -222495270 + L2 LINE L2 2917 3080 -192 1871 154 3 13 chr3 5029325 5029636 -222494942 - AluJb SINE Alu -4 308 1 2317 67 35 0 chr3 5030409 5030692 -222493886 + AluY SINE Alu 1 293 -18 484 227 302 0 chr3 5030694 5030866 -222493712 + MIR SINE MIR 29 252 -10 220 214 18 18 chr3 5030910 5030966 -222493612 + (CA)n Simple_repeat Simple_repeat 1 56 0 477 288 41 7 chr3 5031013 5031159 -222493419 - MER117 DNA MER1_type -36 161 11 374 352 49 6 chr3 5031461 5031623 -222492955 - MIR SINE MIR -13 249 81 713 254 215 0 chr3 5031891 5032096 -222492482 - MIR SINE MIR -8 254 6 494 306 0 0 chr3 5032815 5032926 -222491652 + MER81 DNA DNA 4 114 0 273 249 239 23 chr3 5033088 5033204 -222491374 - L1ME LINE L1 -577 5544 5454 1731 149 72 0 chr3 5033204 5033480 -222491098 + AluSx SINE Alu 1 296 -16 273 249 239 23 chr3 5033480 5033603 -222490975 - L1ME LINE L1 -667 5454 5254 265 368 60 8 chr3 5034604 5034721 -222489857 - L2 LINE L2 0 3313 3191 2430 69 3 0 chr3 5034831 5035135 -222489443 + AluY SINE Alu 1 305 -6 258 282 0 113 chr3 5035804 5035928 -222488650 + MIR3 SINE MIR 87 196 -12 428 255 135 20 chr3 5036438 5036638 -222487940 + MIR SINE MIR 31 253 -9 24 32 0 0 chr3 5038412 5038443 -222486135 + AT_rich Low_complexity Low_complexity 1 31 0 186 43 0 0 chr3 5041464 5041487 -222483091 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1055 130 0 34 chr3 5041798 5041975 -222482603 - AluSg/x SINE Alu -15 294 124 256 267 67 33 chr3 5045128 5045218 -222479360 - MIR SINE MIR -157 105 13 1890 151 18 0 chr3 5045458 5045743 -222478835 - AluJb SINE Alu -14 298 9 235 254 211 7 chr3 5046639 5046781 -222477797 + L1MC/D LINE L1 4531 4701 -1445 275 282 57 0 chr3 5046818 5046942 -222477636 + L1MC/D LINE L1 5695 5825 -1983 245 295 105 11 chr3 5047529 5047624 -222476954 + L3 LINE CR1 1196 1299 -278 1688 188 40 3 chr3 5047715 5048040 -222476538 - MER1B DNA MER1_type 0 337 1 563 280 13 13 chr3 5048293 5048443 -222476135 - MIR SINE MIR -79 183 34 360 232 36 94 chr3 5048447 5048476 -222476102 - L2 LINE L2 -2 3311 3282 2557 98 30 6 chr3 5048476 5048842 -222475736 + THE1C LTR MaLR 1 375 0 360 232 36 94 chr3 5048842 5048950 -222475628 - L2 LINE L2 -31 3282 3182 26 0 0 0 chr3 5050011 5050037 -222474541 + AT_rich Low_complexity Low_complexity 1 26 0 547 300 143 29 chr3 5050308 5050852 -222473726 + L1MC4a LINE L1 4633 5238 -908 348 236 183 21 chr3 5050888 5051079 -222473499 + L1MC4a LINE L1 5296 5517 -2291 1688 80 0 0 chr3 5051121 5051334 -222473244 - AluSg SINE Alu -97 213 1 292 211 273 19 chr3 5051469 5051630 -222472948 + L1MC4a LINE L1 5748 5949 -1859 3374 133 107 6 chr3 5053482 5054116 -222470462 + Tigger1 DNA MER2_type 63 760 -1658 * 7682 127 30 8 chr3 5054107 5055419 -222469159 + Tigger1 DNA MER2_type 1079 2418 0 2365 123 5 32 chr3 5055748 5056122 -222468456 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr3 5059539 5059560 -222465018 + AT_rich Low_complexity Low_complexity 1 21 0 1771 190 7 3 chr3 5059637 5059932 -222464646 - AluSx SINE Alu -16 296 1 28 0 0 0 chr3 5059980 5060008 -222464570 + AT_rich Low_complexity Low_complexity 1 28 0 390 363 57 6 chr3 5060116 5060273 -222464305 + MIR3 SINE MIR 20 184 -24 2160 112 3 0 chr3 5060461 5060756 -222463822 - AluSp SINE Alu -17 296 1 275 87 0 43 chr3 5061368 5061414 -222463164 - L2 LINE L2 -75 3238 3195 527 281 67 12 chr3 5062126 5062290 -222462288 + MER5B DNA MER1_type 6 178 0 2086 121 0 0 chr3 5062704 5063009 -222461569 - AluSx SINE Alu 0 305 1 2223 112 0 13 chr3 5064010 5064313 -222460265 + AluSx SINE Alu 1 299 -13 1905 187 74 71 chr3 5065105 5065700 -222458878 - L1MC3 LINE L1 0 7785 7189 258 262 24 12 chr3 5065701 5065785 -222458793 - MLT1F1 LTR MaLR -443 124 40 276 163 0 0 chr3 5065789 5065838 -222458740 - L1MC3 LINE L1 -692 7093 7045 329 365 0 0 chr3 5065838 5065953 -222458625 + MIR3 SINE MIR 71 185 -23 2290 112 0 0 chr3 5066109 5066412 -222458166 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr3 5066440 5066463 -222458115 + AT_rich Low_complexity Low_complexity 1 23 0 920 146 189 5 chr3 5066626 5066811 -222457767 + MER20 DNA MER1_type 1 219 0 203 79 26 0 chr3 5067654 5067692 -222456886 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 383 301 155 14 chr3 5068689 5068908 -222455670 + MIR SINE MIR 13 262 0 192 293 35 0 chr3 5069621 5069679 -222454899 - MIR3 SINE MIR -37 171 112 231 368 42 0 chr3 5070407 5070502 -222454076 + MIR3 SINE MIR 68 166 -42 207 0 0 0 chr3 5071627 5071650 -222452928 + (TA)n Simple_repeat Simple_repeat 2 24 0 1805 164 7 20 chr3 5071653 5071951 -222452627 - AluJb SINE Alu -18 294 1 1108 265 70 26 chr3 5071980 5072545 -222452033 + L2 LINE L2 2570 3154 -159 21 36 0 0 chr3 5072578 5072606 -222451972 + AT_rich Low_complexity Low_complexity 1 28 0 199 298 0 0 chr3 5072683 5072740 -222451838 + L2 LINE L2 3255 3311 -2 305 195 26 26 chr3 5072755 5072832 -222451746 + MLT1L LTR MaLR 3 79 -536 365 303 48 0 chr3 5073438 5073603 -222450975 + Charlie8 DNA MER1_type 85 257 -2160 468 0 0 0 chr3 5073617 5073669 -222450909 + (TG)n Simple_repeat Simple_repeat 2 53 0 210 296 59 89 chr3 5074850 5074985 -222449593 + MIR SINE MIR 17 147 -61 626 242 65 107 chr3 5074994 5075349 -222449229 - MLT1I LTR MaLR -7 402 63 201 237 0 0 chr3 5075441 5075500 -222449078 + (TA)n Simple_repeat Simple_repeat 1 59 0 300 290 30 53 chr3 5076228 5076359 -222448219 - L2 LINE L2 -4 3309 3182 293 235 43 17 chr3 5076891 5077006 -222447572 + L1ME LINE L1 5630 5747 -374 330 267 0 11 chr3 5077015 5077105 -222447473 + LTR67 LTR ERVL 460 548 -9 459 63 0 0 chr3 5077105 5077168 -222447410 + (CA)n Simple_repeat Simple_repeat 2 64 0 31 76 0 0 chr3 5077418 5077484 -222447094 + AT_rich Low_complexity Low_complexity 1 66 0 285 296 61 17 chr3 5077836 5077951 -222446627 - MIR SINE MIR -6 256 137 22 35 0 0 chr3 5078429 5078458 -222446120 + AT_rich Low_complexity Low_complexity 1 29 0 811 211 80 0 chr3 5080038 5080213 -222444365 + MLT1D LTR MaLR 4 192 -313 1256 191 17 39 chr3 5080213 5080444 -222444134 + AluJo SINE Alu 1 226 -86 648 222 63 16 chr3 5081349 5081538 -222443040 + MIR SINE MIR 44 241 -21 1378 166 115 86 chr3 5081556 5082073 -222442505 + LTR36 LTR ERV1 1 611 0 730 236 220 0 chr3 5082235 5082693 -222441885 + LTR50 LTR ERVL 140 795 0 960 287 89 2 chr3 5082770 5083164 -222441414 + L1ME3A LINE L1 5291 5718 -452 422 78 16 0 chr3 5083164 5083228 -222441350 + MER41B LTR ERV1 481 545 -90 1061 242 66 44 chr3 5083274 5083702 -222440876 + L1ME3A LINE L1 5730 6162 -8 2243 123 3 0 chr3 5083801 5084110 -222440468 - AluSq SINE Alu -3 310 1 209 373 15 0 chr3 5084277 5084344 -222440234 + L2 LINE L2 3198 3265 -7 199 208 260 39 chr3 5084717 5084794 -222439784 + MIR3 SINE MIR 63 156 -52 387 256 53 0 chr3 5084850 5084983 -222439595 - MER117 DNA MER1_type -56 141 2 231 291 0 0 chr3 5084985 5085040 -222439538 + MIR3 SINE MIR 154 208 0 327 274 183 7 chr3 5085947 5086100 -222438478 + MIR3 SINE MIR 15 194 -14 186 283 170 28 chr3 5086476 5086582 -222437996 + MIR3 SINE MIR 84 204 -4 220 324 14 0 chr3 5086827 5086901 -222437677 + (TA)n Simple_repeat Simple_repeat 1 75 0 1889 197 16 101 chr3 5087081 5087628 -222436950 - MLT1D LTR MaLR -2 503 3 360 364 23 6 chr3 5087720 5087896 -222436682 - MIR3 SINE MIR -13 195 17 216 171 0 0 chr3 5088271 5088306 -222436272 + (TCCA)n Simple_repeat Simple_repeat 3 37 0 216 210 65 32 chr3 5088334 5088396 -222436182 - L2 LINE L2 -42 3230 3167 298 347 200 7 chr3 5088416 5088566 -222436012 + MER5A DNA MER1_type 1 179 -10 2738 103 8 5 chr3 5089463 5089850 -222434728 - L1PB1 LINE L1 -1 6150 5763 23 0 0 0 chr3 5089909 5089932 -222434646 + AT_rich Low_complexity Low_complexity 1 23 0 438 333 0 0 chr3 5089940 5090051 -222434527 - L2 LINE L2 -5 3267 3157 1071 103 0 7 chr3 5091168 5091314 -222433264 + AluSg/x SINE Alu 135 279 -30 415 253 114 32 chr3 5091709 5091867 -222432711 + MIR3 SINE MIR 38 208 0 3242 138 14 68 chr3 5092033 5092234 -222432344 + LTR26B LTR ERV1 4 214 -317 1604 174 19 47 chr3 5092234 5092551 -222432027 + AluJb SINE Alu 1 308 -4 3242 138 14 68 chr3 5092551 5092907 -222431671 + LTR26B LTR ERV1 214 531 0 817 258 33 16 chr3 5093208 5093390 -222431188 - MER5A DNA MER1_type -4 185 1 1154 164 116 58 chr3 5093475 5093786 -222430792 + MLT1D LTR MaLR 12 340 -165 261 119 48 0 chr3 5093762 5093804 -222430774 - MLT1D LTR MaLR -154 351 308 * 580 294 99 14 chr3 5094633 5094854 -222429724 - MIR SINE MIR -5 257 18 2426 96 0 0 chr3 5095029 5095341 -222429237 - AluSx SINE Alu 0 312 1 993 215 45 0 chr3 5095862 5096062 -222428516 - MER3 DNA MER1_type 0 209 1 311 301 68 20 chr3 5096308 5096454 -222428124 - MIR SINE MIR -61 201 49 337 258 13 0 chr3 5096455 5096542 -222428036 - MIR SINE MIR -92 116 40 442 306 25 13 chr3 5096723 5096880 -222427698 - MIR SINE MIR 0 262 104 5415 129 16 5 chr3 5097934 5098750 -222425828 + L1MC1 LINE L1 5509 6333 0 542 239 43 111 chr3 5099020 5099162 -222425416 + Charlie8 DNA MER1_type 2 123 -218 2145 109 0 50 chr3 5099162 5099483 -222425095 - AluSx SINE Alu -3 309 5 542 239 43 111 chr3 5099483 5099574 -222425004 + Charlie8 DNA MER1_type 123 219 -122 272 375 13 33 chr3 5099877 5100029 -222424549 + MIR3 SINE MIR 21 169 -39 345 232 72 65 chr3 5100085 5100223 -222424355 - MER103 DNA DNA -18 148 10 621 317 176 32 chr3 5101329 5101670 -222422908 + L3 LINE CR1 751 1140 -437 2433 121 22 25 chr3 5101673 5102038 -222422540 - THE1B LTR MaLR 0 364 1 189 288 225 0 chr3 5102130 5102210 -222422368 + L3 LINE CR1 1188 1285 -292 1274 177 42 103 chr3 5102282 5102593 -222421985 - AluJo SINE Alu -20 292 1 1721 170 10 10 chr3 5102608 5102908 -222421670 - AluJo SINE Alu -12 300 1 1928 147 3 13 chr3 5103842 5104155 -222420423 + AluJb SINE Alu 1 310 -2 297 320 70 31 chr3 5104390 5104518 -222420060 - L2 LINE L2 -8 3264 3132 2351 132 33 33 chr3 5105289 5105583 -222418995 + THE1B LTR MaLR 1 297 -67 1994 125 3 14 chr3 5105583 5105880 -222418698 - AluSx SINE Alu -18 294 1 2351 132 33 33 chr3 5105880 5105949 -222418629 + THE1B LTR MaLR 296 364 0 4922 172 27 34 chr3 5107473 5108859 -222415719 - L1MB3 LINE L1 -2 6181 4810 193 276 0 52 chr3 5108969 5109027 -222415551 - MIR3 SINE MIR -146 62 8 439 239 92 23 chr3 5109198 5109328 -222415250 + MLT1J2 LTR MaLR 37 175 -275 349 289 47 57 chr3 5109667 5109878 -222414700 - MLT1I LTR MaLR -26 383 175 2055 109 35 109 chr3 5109878 5110283 -222414295 - THE1C LTR MaLR 0 375 1 747 290 136 18 chr3 5110292 5110733 -222413845 + L2 LINE L2 2821 3313 0 407 300 110 11 chr3 5112051 5112252 -222412326 - MIR SINE MIR -25 237 19 2249 185 41 30 chr3 5113615 5114079 -222410499 + MLT2B1 LTR ERVL 1 469 -51 273 196 21 93 chr3 5114118 5114215 -222410363 - L1MC4 LINE L1 -1339 6703 6614 * 276 170 0 130 chr3 5114129 5114229 -222410349 + L1MC4 LINE L1 6617 6703 -1339 213 175 0 0 chr3 5114229 5114269 -222410309 + (TATG)n Simple_repeat Simple_repeat 4 43 0 422 16 0 109 chr3 5114272 5114336 -222410242 + MLT2B1 LTR ERVL 464 520 0 690 297 72 43 chr3 5114429 5114869 -222409709 - Charlie8 DNA MER1_type -2145 272 1 21 0 0 0 chr3 5115353 5115374 -222409204 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr3 5116695 5116723 -222407855 + (TG)n Simple_repeat Simple_repeat 2 29 0 243 0 0 0 chr3 5116722 5116749 -222407829 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 1883 169 7 0 chr3 5116749 5117056 -222407522 - AluJb SINE Alu -3 309 1 27 49 0 0 chr3 5117056 5117097 -222407481 + AT_rich Low_complexity Low_complexity 1 41 0 798 188 17 104 chr3 5117515 5117755 -222406823 - MER20 DNA MER1_type 0 219 1 1335 215 87 36 chr3 5117876 5118282 -222406296 + MER113 DNA MER1_type? 3 440 -81 4294 139 67 10 chr3 5118282 5118970 -222405608 + LTR8A LTR ERV1 1 727 0 1335 215 87 36 chr3 5118970 5119056 -222405522 + MER113 DNA MER1_type? 440 520 -1 220 286 48 24 chr3 5119287 5119371 -222405207 + MIR SINE MIR 155 240 -22 1988 145 0 16 chr3 5119393 5119696 -222404882 - AluSx SINE Alu -14 298 1 28 0 0 0 chr3 5119696 5119724 -222404854 + AT_rich Low_complexity Low_complexity 1 28 0 577 277 141 5 chr3 5120240 5120446 -222404132 - MIR SINE MIR -6 256 23 1590 142 47 4 chr3 5120462 5120828 -222403750 + LTR47A LTR ERVL 1 436 -16 1953 169 156 5 chr3 5120828 5121200 -222403378 - MSTA LTR MaLR 0 428 1 1590 142 47 4 chr3 5121200 5121218 -222403360 + LTR47A LTR ERVL 436 452 0 307 293 75 34 chr3 5121232 5121379 -222403199 + LTR47A-int LTR ERVL 15 167 -5176 699 171 43 41 chr3 5121521 5121715 -222402863 + LTR49-int LTR ERV1 2009 2290 -2590 1570 181 4 0 chr3 5121732 5122013 -222402565 + MER41B LTR ERV1 1 282 -353 4759 221 82 41 chr3 5122016 5122237 -222402341 + LTR49-int LTR ERV1 891 1101 -3090 892 129 0 30 chr3 5122237 5122395 -222402183 + FLAM_C SINE Alu 1 154 0 4759 221 82 41 chr3 5122395 5123394 -222401184 + LTR49-int LTR ERV1 1101 2165 -2026 2202 64 37 7 chr3 5123394 5123689 -222400889 + MLT2A1 LTR ERVL 1 304 -140 261 0 0 0 chr3 5123709 5123738 -222400840 + (CA)n Simple_repeat Simple_repeat 2 30 0 394 36 18 18 chr3 5123742 5123797 -222400781 + MLT2A1 LTR ERVL 399 453 0 4812 142 47 58 chr3 5123798 5125279 -222399299 + LTR49-int LTR ERV1 4411 6064 -258 2338 148 133 2 chr3 5125291 5125691 -222398887 + LTR47A LTR ERVL 1 452 0 277 209 132 62 chr3 5127098 5127227 -222397351 + MLT1J2 LTR MaLR 3 140 -310 1714 174 98 113 chr3 5127495 5127709 -222396869 + MLT1D LTR MaLR 1 217 -288 3621 158 6 2 chr3 5127709 5128234 -222396344 + MER1A DNA MER1_type 1 527 0 1714 174 98 113 chr3 5128234 5128532 -222396046 + MLT1D LTR MaLR 217 505 0 302 291 122 17 chr3 5128622 5128794 -222395784 - MIR SINE MIR 0 262 73 4187 118 24 5 chr3 5128865 5129456 -222395122 + LTR43 LTR ERV1 1 602 0 214 308 55 62 chr3 5130079 5130151 -222394427 + MIR SINE MIR 72 143 -119 2289 83 48 0 chr3 5130151 5130440 -222394138 + AluSc SINE Alu 1 303 -6 214 308 55 62 chr3 5130440 5130513 -222394065 + MIR SINE MIR 143 216 -46 238 329 0 37 chr3 5131054 5131136 -222393442 + L2 LINE L2 3192 3270 -2 786 216 32 42 chr3 5131389 5131579 -222392999 + MIR SINE MIR 37 224 -38 237 143 24 24 chr3 5131596 5131638 -222392940 + MLT1D LTR MaLR 1 42 -463 1679 184 62 42 chr3 5131646 5131756 -222392822 + MLT2D LTR ERVL 1 107 -307 2393 60 0 13 chr3 5131756 5132055 -222392523 - AluY SINE Alu -16 295 1 1679 184 62 42 chr3 5132055 5132165 -222392413 + MLT2D LTR ERVL 107 213 -201 2775 195 22 68 chr3 5132165 5132807 -222391771 - LTR9 LTR ERV1 0 612 1 1679 184 62 42 chr3 5132807 5132988 -222391590 + MLT2D LTR ERVL 213 411 -3 1185 254 81 47 chr3 5132990 5133435 -222391143 + MLT1D LTR MaLR 46 505 0 234 222 139 28 chr3 5134117 5134225 -222390353 + MER113 DNA MER1_type? 1 120 -401 2076 128 6 10 chr3 5134826 5135170 -222389408 + AluSx SINE Alu 1 343 0 296 183 42 0 chr3 5136907 5136978 -222387600 - MER116 DNA Mariner -6 74 1 1445 258 11 8 chr3 5137404 5137760 -222386818 - MLT1A2 LTR MaLR -14 360 4 671 306 73 25 chr3 5137947 5138470 -222386108 - L1ME4a LINE L1 -224 5897 5350 352 262 69 48 chr3 5138682 5138827 -222385751 - MLT1K LTR MaLR -167 421 274 321 267 11 7 chr3 5139121 5139242 -222385336 + LTR43 LTR ERV1 223 472 -207 253 229 148 0 chr3 5140089 5140150 -222384428 + L2 LINE L2 3201 3270 -2 249 291 0 25 chr3 5140153 5140232 -222384346 + MIR3 SINE MIR 132 208 0 403 296 23 109 chr3 5140403 5140660 -222383918 + MIR SINE MIR 19 253 -9 30 0 0 0 chr3 5141372 5141402 -222383176 + AT_rich Low_complexity Low_complexity 1 30 0 1334 201 0 76 chr3 5141402 5141496 -222383082 - AluJo SINE Alu -32 280 180 1993 173 12 6 chr3 5141496 5141837 -222382741 - MER61A LTR ERV1 0 343 1 1334 201 0 76 chr3 5141837 5142045 -222382533 - AluJo SINE Alu -132 180 1 458 243 87 28 chr3 5142246 5142406 -222382172 + MIR3 SINE MIR 20 180 -48 304 264 110 110 chr3 5142534 5142761 -222381817 + MIR SINE MIR 4 230 -32 1337 155 4 52 chr3 5142762 5143014 -222381564 - THE1B LTR MaLR 0 364 125 4969 62 1 3 chr3 5143014 5143672 -222380906 - THE1B-int LTR MaLR -923 657 1 1997 115 81 32 chr3 5143672 5144019 -222380559 - THE1B LTR MaLR 0 364 1 188 235 0 0 chr3 5144079 5144113 -222380465 + MIR3 SINE MIR 151 184 -24 1915 143 0 13 chr3 5144113 5144413 -222380165 - AluSx SINE Alu -16 296 1 477 40 40 0 chr3 5144571 5144647 -222379931 + (TCTA)n Simple_repeat Simple_repeat 3 81 0 1743 179 37 10 chr3 5144655 5145057 -222379521 - L1ME1 LINE L1 -7 6159 5747 548 228 8 0 chr3 5145101 5145228 -222379350 - L1ME1 LINE L1 -521 5645 5518 1165 239 84 16 chr3 5145238 5145606 -222378972 - MLT1D LTR MaLR 0 505 113 1182 151 58 92 chr3 5145618 5145952 -222378626 + AluJb SINE Alu 1 324 0 475 169 24 0 chr3 5145995 5146078 -222378500 - MLT1D LTR MaLR -417 88 4 1579 189 70 39 chr3 5146089 5146259 -222378319 - L1ME1 LINE L1 -662 5504 5341 2208 124 7 0 chr3 5146259 5146566 -222378012 - AluSx SINE Alu -3 309 1 1579 189 70 39 chr3 5146566 5146974 -222377604 - L1ME1 LINE L1 -825 5341 4902 1950 161 0 3 chr3 5148200 5148499 -222376079 - AluJo SINE Alu -14 298 1 232 332 158 21 chr3 5149567 5149757 -222374821 + L3 LINE CR1 1009 1224 -353 181 152 61 0 chr3 5149814 5149847 -222374731 + MER5B DNA MER1_type 11 45 -133 722 209 120 0 chr3 5150022 5150180 -222374398 + MER45A DNA AcHobo 2 178 0 2276 94 3 0 chr3 5151759 5152057 -222372521 - AluSx SINE Alu -13 299 1 581 183 0 48 chr3 5152649 5152775 -222371803 - Tigger2 DNA MER2_type 0 2718 2599 569 240 0 0 chr3 5152772 5152893 -222371685 + MER45A DNA AcHobo 57 177 -1 * 1774 117 78 3 chr3 5153101 5153408 -222371170 - Tigger2 DNA MER2_type -116 2602 2273 266 254 30 0 chr3 5153398 5153465 -222371113 - Tigger2 DNA MER2_type -2649 69 1 * 348 325 42 6 chr3 5153724 5153890 -222370688 + MIR3 SINE MIR 30 201 -7 266 254 30 0 chr3 5154397 5154464 -222370114 + Tigger2 DNA MER2_type 1 69 -2649 * 336 139 241 13 chr3 5154454 5154533 -222370045 + Tigger2 DNA MER2_type 2273 2369 -349 336 286 30 75 chr3 5155109 5155242 -222369336 + L2 LINE L2 2943 3069 -203 400 353 0 0 chr3 5155556 5155678 -222368900 + MIR3 SINE MIR 72 193 -15 3960 121 29 7 chr3 5156097 5156717 -222367861 + MER41B LTR ERV1 2 635 0 632 288 101 5 chr3 5156719 5156938 -222367640 - MIR SINE MIR 0 262 23 3452 211 51 36 chr3 5157506 5158595 -222365983 + L1MC4a LINE L1 6700 7805 -3 641 190 29 36 chr3 5158613 5158750 -222365828 - AluJo SINE Alu -176 136 1 1745 166 3 19 chr3 5158865 5159178 -222365400 + AluJb SINE Alu 5 312 0 230 245 0 0 chr3 5159300 5159353 -222365225 - L2 LINE L2 -4 3309 3257 1902 102 35 0 chr3 5160263 5160518 -222364060 + AluSq SINE Alu 49 312 -1 2234 127 0 0 chr3 5160919 5161219 -222363359 - AluSx SINE Alu -12 300 1 192 258 45 15 chr3 5162131 5162197 -222362381 - L2 LINE L2 -1 3312 3245 2473 162 7 20 chr3 5162680 5163119 -222361459 - Tigger2a DNA MER2_type 0 434 2 222 37 0 0 chr3 5163131 5163158 -222361420 + (TA)n Simple_repeat Simple_repeat 2 28 0 324 294 167 11 chr3 5163337 5163517 -222361061 + MLT1J1 LTR MaLR 68 275 -171 252 363 189 19 chr3 5163892 5164258 -222360320 - L2 LINE L2 -344 2970 2543 968 204 75 45 chr3 5164292 5164625 -222359953 + MER2 DNA MER2_type 1 343 -1 665 283 70 86 chr3 5166308 5166898 -222357680 + MLT1K LTR MaLR 9 588 0 3411 191 43 32 chr3 5167317 5167589 -222356989 - L1MB8 LINE L1 -5 6173 5906 1951 177 67 98 chr3 5167589 5168272 -222356306 + MER4A LTR ERV1 3 664 0 3411 191 43 32 chr3 5168272 5168854 -222355724 - L1MB8 LINE L1 -272 5906 5309 736 259 70 5 chr3 5169061 5169246 -222355332 + MIR SINE MIR 29 225 -37 289 349 88 17 chr3 5169418 5169656 -222354922 - L2 LINE L2 -1195 2119 1865 2338 112 7 0 chr3 5171132 5171437 -222353141 + AluSx SINE Alu 1 307 -5 222 278 19 0 chr3 5171573 5171627 -222352951 + L2 LINE L2 3237 3291 -22 354 325 117 13 chr3 5171656 5171887 -222352691 + MIR SINE MIR 8 262 0 1845 109 0 0 chr3 5171919 5172158 -222352420 - AluSc SINE Alu -70 239 1 271 95 0 0 chr3 5172182 5172224 -222352354 - L1MCa LINE L1 -4195 2231 2190 635 171 99 13 chr3 5172235 5172387 -222352191 - L1MB3 LINE L1 -8 6175 6011 429 247 64 16 chr3 5172380 5172566 -222352012 - L1MCb LINE L1 -4219 2263 2068 * 1501 228 30 37 chr3 5172585 5173076 -222351502 - L1MA9 LINE L1 -41 6271 5784 260 136 0 0 chr3 5173130 5173174 -222351404 + L1M4 LINE L1 5731 5774 -400 * 986 172 0 0 chr3 5173173 5173359 -222351219 - L1MA9 LINE L1 -552 5782 5597 * 2807 214 78 19 chr3 5173357 5174465 -222350113 - L1MCb LINE L1 -4434 2003 713 281 87 0 22 chr3 5174467 5174513 -222350065 + (TTTC)n Simple_repeat Simple_repeat 3 47 0 1226 90 6 0 chr3 5174526 5174704 -222349874 + (TTC)n Simple_repeat Simple_repeat 2 180 0 1030 228 47 37 chr3 5174734 5175032 -222349546 - L1MCb LINE L1 -5190 717 417 818 266 31 35 chr3 5175111 5175401 -222349177 - L1MCb LINE L1 -5480 427 139 237 258 45 11 chr3 5175422 5175511 -222349067 - L1MCb LINE L1 -6316 110 19 216 0 0 0 chr3 5175773 5175797 -222348781 + (A)n Simple_repeat Simple_repeat 1 24 0 364 261 17 25 chr3 5175809 5175928 -222348650 - MLT1K LTR MaLR -339 249 132 22 0 0 0 chr3 5176547 5176569 -222348009 + AT_rich Low_complexity Low_complexity 1 22 0 353 253 111 25 chr3 5176691 5177011 -222347567 - MLT1K LTR MaLR -35 553 158 478 269 304 0 chr3 5177130 5177301 -222347277 - MIR SINE MIR -1 261 39 1631 147 27 17 chr3 5178031 5178324 -222346254 + MSTA LTR MaLR 133 428 0 508 258 89 72 chr3 5178346 5178771 -222345807 - MLT1H LTR MaLR -1 592 3 203 328 0 0 chr3 5178894 5178961 -222345617 - MIR SINE MIR 0 262 196 398 35 0 18 chr3 5178987 5179044 -222345534 + (TA)n Simple_repeat Simple_repeat 2 57 0 610 261 133 11 chr3 5179062 5179090 -222345488 - MIR SINE MIR -44 218 195 279 0 0 0 chr3 5179090 5179121 -222345457 + (CA)n Simple_repeat Simple_repeat 2 32 0 610 261 133 11 chr3 5179121 5179280 -222345298 - MIR SINE MIR -67 195 8 1087 175 0 0 chr3 5179396 5179562 -222345016 + FRAM SINE Alu 1 166 -10 1258 245 28 3 chr3 5180089 5180416 -222344162 - MER58B DNA MER1_type -6 335 1 3552 113 72 26 chr3 5181006 5182084 -222342494 + MER11A LTR ERVK 1 1232 -4 11735 207 24 17 chr3 5182237 5186146 -222338432 + L1PA16 LINE L1 2234 6164 -2 260 244 154 0 chr3 5187488 5187611 -222336967 - L3 LINE CR1 -215 1362 1221 664 286 54 17 chr3 5187613 5187854 -222336724 + MIR SINE MIR 13 262 0 314 192 202 61 chr3 5187934 5188033 -222336545 - MER81 DNA DNA -1 113 1 292 289 195 27 chr3 5188583 5188732 -222335846 - L3 LINE CR1 -1127 450 277 313 267 69 15 chr3 5189880 5190011 -222334567 - MIR SINE MIR -90 172 35 523 348 42 42 chr3 5190123 5190309 -222334269 + L2 LINE L2 2465 2653 -661 1058 197 16 0 chr3 5190309 5190492 -222334086 - MER5A DNA MER1_type -3 186 1 523 348 42 42 chr3 5190492 5190618 -222333960 + L2 LINE L2 2652 2777 -537 621 234 105 0 chr3 5190626 5190750 -222333828 - FRAM SINE Alu -39 137 1 590 308 195 11 chr3 5190812 5191176 -222333402 + L2 LINE L2 2881 3311 -2 1713 182 0 20 chr3 5191653 5191955 -222332623 - AluJo SINE Alu -16 296 1 911 327 74 13 chr3 5191979 5192267 -222332311 + MLT1K LTR MaLR 94 422 -166 2302 122 73 14 chr3 5192267 5192621 -222331957 + THE1C LTR MaLR 1 375 0 911 327 74 13 chr3 5192621 5192791 -222331787 + MLT1K LTR MaLR 422 580 -8 195 325 98 16 chr3 5193083 5193206 -222331372 + MIR3 SINE MIR 73 205 -3 281 261 81 0 chr3 5194257 5194368 -222330210 + MER53 DNA DNA 70 189 0 1266 171 33 12 chr3 5194444 5194684 -222329894 - MIR SINE MIR -7 255 11 1148 208 5 18 chr3 5195869 5196090 -222328488 + MER20 DNA MER1_type 2 219 0 2168 180 64 10 chr3 5197218 5197624 -222326954 - MSTB1 LTR MaLR 0 432 5 279 272 110 73 chr3 5197847 5197928 -222326650 - MIR3 SINE MIR -34 174 85 927 239 159 44 chr3 5197928 5198292 -222326286 + MLT1I LTR MaLR 3 408 -1 279 272 110 73 chr3 5198292 5198346 -222326232 - MIR3 SINE MIR -123 85 34 3565 159 67 20 chr3 5198524 5199165 -222325413 - LTR51 LTR ERV1 0 671 1 321 211 0 0 chr3 5199940 5199997 -222324581 + L2 LINE L2 3216 3272 0 26 30 0 0 chr3 5200306 5200339 -222324239 + AT_rich Low_complexity Low_complexity 1 33 0 981 185 29 62 chr3 5200528 5200771 -222323807 + MER106A DNA MER1_type 1 235 -1 1740 169 3 14 chr3 5201314 5201635 -222322943 + AluJb SINE Alu 2 312 0 915 196 12 12 chr3 5202109 5202277 -222322301 - AluJo SINE Alu -24 288 121 319 313 92 35 chr3 5202306 5202708 -222321870 - L1M4 LINE L1 -2412 3734 3310 723 203 114 47 chr3 5202731 5202967 -222321611 - L1MB8 LINE L1 -2 6176 5925 850 131 0 22 chr3 5203773 5203910 -222320668 - L1MB8 LINE L1 -598 5693 5560 316 250 75 0 chr3 5203911 5203991 -222320587 - MIR SINE MIR -91 171 86 196 192 19 58 chr3 5204106 5204158 -222320420 - MIR3 SINE MIR -14 194 145 45 19 0 0 chr3 5204227 5204279 -222320299 + AT_rich Low_complexity Low_complexity 1 52 0 364 306 104 8 chr3 5204544 5204678 -222319900 - MLT1I LTR MaLR -244 165 19 568 179 32 0 chr3 5204771 5204894 -222319684 - MER53 DNA DNA 0 189 63 512 206 167 39 chr3 5204947 5205127 -222319451 + MER113 DNA MER1_type? 274 476 -45 246 239 28 42 chr3 5205199 5205270 -222319308 - MIR SINE MIR -62 146 77 1574 186 67 25 chr3 5206473 5206800 -222317778 - MER58B DNA MER1_type 0 341 1 2229 126 82 15 chr3 5207036 5207377 -222317201 - THE1B LTR MaLR 0 364 1 11951 86 6 3 chr3 5207382 5208947 -222315631 - THE1B-int LTR MaLR -9 1571 1 2261 131 76 15 chr3 5208947 5209290 -222315288 - THE1B LTR MaLR 0 364 1 25 0 0 0 chr3 5209442 5209467 -222315111 + AT_rich Low_complexity Low_complexity 1 25 0 424 309 210 22 chr3 5209605 5209929 -222314649 + L2 LINE L2 2887 3271 -1 391 279 202 6 chr3 5209931 5210114 -222314464 + MIR SINE MIR 20 238 -24 221 277 0 0 chr3 5210084 5210131 -222314447 + L2 LINE L2 3254 3300 -13 * 246 174 43 33 chr3 5210131 5210223 -222314355 + (TCTA)n Simple_repeat Simple_repeat 3 95 0 208 200 22 0 chr3 5211398 5211443 -222313135 + (TAAA)n Simple_repeat Simple_repeat 1 46 0 1961 206 80 49 chr3 5211926 5212415 -222312163 + MLT1D LTR MaLR 2 505 0 270 246 282 0 chr3 5212499 5212609 -222311969 + MER5A DNA MER1_type 49 189 0 1893 212 51 22 chr3 5213801 5214249 -222310329 + MLT1C LTR MaLR 6 466 -1 1886 151 18 0 chr3 5214254 5214533 -222310045 + AluSx SINE Alu 19 302 -10 324 322 0 0 chr3 5214556 5214671 -222309907 - MIR SINE MIR -6 256 142 2276 111 3 0 chr3 5214681 5214979 -222309599 - AluSx SINE Alu -13 299 1 367 338 8 8 chr3 5215497 5215630 -222308948 - MIR3 SINE MIR -65 143 11 270 254 0 0 chr3 5215666 5215776 -222308802 + (TCCA)n Simple_repeat Simple_repeat 3 112 0 22 56 0 0 chr3 5216145 5216181 -222308397 + AT_rich Low_complexity Low_complexity 1 36 0 273 360 26 0 chr3 5216567 5216681 -222307897 - MIR SINE MIR -44 218 102 344 266 53 44 chr3 5216954 5217067 -222307511 - MIR3 SINE MIR -25 183 70 381 293 94 17 chr3 5217147 5217242 -222307336 + MIR SINE MIR 30 116 -146 1653 167 0 61 chr3 5217242 5217401 -222307177 - AluJb SINE Alu -20 292 160 2183 99 0 0 chr3 5217401 5217673 -222306905 - AluSx SINE Alu -17 295 24 1653 167 0 61 chr3 5217673 5217824 -222306754 - AluJb SINE Alu -152 160 1 381 293 94 17 chr3 5217824 5217909 -222306669 + MIR SINE MIR 116 224 -38 1078 250 23 101 chr3 5218053 5218821 -222305757 - L2 LINE L2 0 3313 2624 884 286 118 32 chr3 5218836 5219210 -222305368 + MLT1J2 LTR MaLR 15 420 -30 841 294 38 55 chr3 5219270 5219617 -222304961 - L2 LINE L2 -685 2629 2289 806 197 84 64 chr3 5219632 5219835 -222304743 - MER63A DNA MER1_type -2 208 2 204 322 0 46 chr3 5220272 5220359 -222304219 + MIR SINE MIR 130 212 -50 21 0 0 0 chr3 5220928 5220949 -222303629 + AT_rich Low_complexity Low_complexity 1 21 0 288 307 88 0 chr3 5221571 5221708 -222302870 + L3 LINE CR1 716 864 -713 2781 66 43 3 chr3 5221926 5222276 -222302302 - THE1B LTR MaLR 0 364 1 201 381 44 17 chr3 5222869 5223050 -222301528 + L3 LINE CR1 1154 1339 -238 681 293 18 26 chr3 5223092 5223321 -222301257 - MIR SINE MIR -29 233 7 229 274 60 24 chr3 5223345 5223429 -222301149 + L3 LINE CR1 1358 1444 -133 190 274 55 14 chr3 5223843 5223916 -222300662 + L3 LINE CR1 1467 1542 -35 1827 173 141 3 chr3 5225045 5225421 -222299157 + MSTA LTR MaLR 1 428 0 254 281 26 61 chr3 5225564 5225678 -222298900 - MIR SINE MIR -122 140 31 247 299 149 65 chr3 5225734 5225935 -222298643 - MIR SINE MIR -17 245 28 348 279 35 87 chr3 5226237 5226282 -222298296 + MER5B DNA MER1_type 4 50 -128 1866 208 19 6 chr3 5226282 5226642 -222297936 + MLT1A1 LTR MaLR 1 365 0 348 279 35 87 chr3 5226642 5226768 -222297810 + MER5B DNA MER1_type 50 166 -12 851 206 22 27 chr3 5226939 5227123 -222297455 - MER5A DNA MER1_type -5 184 2 2110 249 48 60 chr3 5227919 5228210 -222296368 - L1ME3A LINE L1 -110 6060 5767 2001 121 0 7 chr3 5228210 5228490 -222296088 + AluSq SINE Alu 1 278 -35 216 0 0 0 chr3 5228492 5228516 -222296062 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 189 94 0 0 chr3 5228522 5228554 -222296024 + (TAAG)n Simple_repeat Simple_repeat 2 33 0 2110 249 48 60 chr3 5228554 5228805 -222295773 - L1ME3A LINE L1 -409 5761 5508 2014 141 37 3 chr3 5228805 5229132 -222295446 - MER44D DNA MER2_type -1 608 1 2110 249 48 60 chr3 5229132 5229482 -222295096 - L1ME3A LINE L1 -662 5508 5175 2264 121 0 7 chr3 5229601 5229907 -222294671 - AluSx SINE Alu -7 305 2 1940 168 12 0 chr3 5232470 5232798 -222291780 + L1MB2 LINE L1 5709 6040 -131 833 174 7 0 chr3 5232841 5232990 -222291588 + L1MB3 LINE L1 6034 6183 0 337 105 18 0 chr3 5233061 5233118 -222291460 + L1MB2 LINE L1 6114 6171 0 1348 314 59 58 chr3 5233225 5234332 -222290246 + L2 LINE L2 2201 3312 -1 198 288 61 15 chr3 5234524 5234590 -222289988 - MIR3 SINE MIR -25 183 115 772 157 9 0 chr3 5234692 5234807 -222289771 - FLAM_C SINE Alu -15 118 3 252 59 0 0 chr3 5236723 5236757 -222287821 + (CA)n Simple_repeat Simple_repeat 2 35 0 2034 185 33 31 chr3 5236811 5237367 -222287211 + MLT2A2 LTR ERVL 1 554 0 1677 186 0 7 chr3 5237857 5238149 -222286429 - AluJo SINE Alu -22 290 3 323 255 20 40 chr3 5238690 5238839 -222285739 - Charlie8 DNA MER1_type -2194 223 78 1160 189 43 13 chr3 5239041 5239274 -222285304 - L1ME1 LINE L1 -4 6162 5923 * 1928 200 113 20 chr3 5239268 5239355 -222285223 - L1MD3 LINE L1 -743 5403 5326 1577 172 46 40 chr3 5239355 5239728 -222284850 + THE1C LTR MaLR 1 375 0 1928 200 113 20 chr3 5239728 5240295 -222284283 - L1MD3 LINE L1 -820 5326 5105 297 0 0 0 chr3 5240295 5240328 -222284250 + (CA)n Simple_repeat Simple_repeat 2 34 0 1928 200 113 20 chr3 5240328 5240492 -222284086 - L1MD3 LINE L1 -1041 5105 4958 246 286 60 8 chr3 5241448 5241506 -222283072 - L2 LINE L2 -1436 1878 1825 2586 52 0 0 chr3 5241506 5241812 -222282766 + AluY SINE Alu 1 306 -5 246 286 60 8 chr3 5241812 5241886 -222282692 - L2 LINE L2 -1489 1825 1739 866 293 57 6 chr3 5242009 5242340 -222282238 + L2 LINE L2 1868 2215 -1099 706 152 0 118 chr3 5242341 5242519 -222282059 + MLT1E2 LTR MaLR 1 157 -469 * 1732 189 13 0 chr3 5242514 5242820 -222281758 + MLT1A1 LTR MaLR 56 365 0 6078 198 88 83 chr3 5242820 5243240 -222281338 + MLT1A1-int LTR MaLR 1 417 -1318 1419 206 16 23 chr3 5243240 5243546 -222281032 - AluJo SINE Alu -8 304 1 6078 198 88 83 chr3 5243546 5244851 -222279727 + MLT1A1-int LTR MaLR 417 1735 0 2060 178 8 11 chr3 5244851 5245217 -222279361 + MLT1A1 LTR MaLR 1 365 0 420 275 35 69 chr3 5245729 5245907 -222278671 + MIR SINE MIR 20 189 -50 465 19 0 0 chr3 5246428 5246482 -222278096 + (CA)n Simple_repeat Simple_repeat 1 54 0 1615 246 73 39 chr3 5247396 5247933 -222276645 + MLT1K LTR MaLR 28 582 -6 180 290 16 16 chr3 5247992 5248054 -222276524 + MIR SINE MIR 83 144 -64 27 0 0 0 chr3 5248436 5248463 -222276115 + AT_rich Low_complexity Low_complexity 1 27 0 211 254 45 0 chr3 5248650 5248717 -222275861 + MIR SINE MIR 182 251 -11 369 250 73 62 chr3 5249584 5249776 -222274802 + MIR SINE MIR 14 207 -55 419 287 61 24 chr3 5250378 5250542 -222274036 + MIR SINE MIR 84 253 -9 489 244 8 39 chr3 5251743 5251870 -222272708 - MLT1F LTR MaLR -332 210 88 297 135 0 0 chr3 5252396 5252448 -222272130 + (GA)n Simple_repeat Simple_repeat 1 52 0 255 350 36 7 chr3 5252501 5252639 -222271939 - MIR SINE MIR -65 143 21 711 289 24 45 chr3 5254552 5254798 -222269780 + MIR SINE MIR 15 255 -7 205 297 16 31 chr3 5254830 5254894 -222269684 - MIR SINE MIR -113 95 33 48 53 0 0 chr3 5255789 5255865 -222268713 + AT_rich Low_complexity Low_complexity 1 76 0 1447 238 3 3 chr3 5256723 5257005 -222267573 + AluJo SINE Alu 4 285 -27 345 47 0 0 chr3 5257035 5257078 -222267500 + (TG)n Simple_repeat Simple_repeat 2 44 0 302 294 18 9 chr3 5257167 5257276 -222267302 - MIR3 SINE MIR -2 206 97 195 129 0 0 chr3 5257338 5257369 -222267209 + (CA)n Simple_repeat Simple_repeat 2 32 0 334 264 35 0 chr3 5257388 5257475 -222267103 + MIR SINE MIR 166 255 -7 212 261 29 14 chr3 5258003 5258072 -222266506 + L3 LINE CR1 1503 1572 -5 264 243 57 86 chr3 5258240 5258380 -222266198 - MIR SINE MIR -3 259 124 261 274 43 26 chr3 5258435 5258552 -222266026 - MIR SINE MIR -59 203 85 191 326 167 0 chr3 5258736 5258957 -222265621 + L2 LINE L2 1441 1698 -1616 382 238 188 13 chr3 5258964 5259214 -222265364 - L1MC4a LINE L1 -224 5897 5602 309 274 11 11 chr3 5259437 5259532 -222265046 + L2 LINE L2 2994 3088 -225 21 36 0 0 chr3 5259539 5259567 -222265011 + AT_rich Low_complexity Low_complexity 1 28 0 2671 87 5 0 chr3 5259567 5259935 -222264643 - L1PB1 LINE L1 0 6151 5782 585 152 53 0 chr3 5259939 5260110 -222264468 + (TA)n Simple_repeat Simple_repeat 1 180 0 354 173 74 0 chr3 5260124 5260286 -222264292 + (TA)n Simple_repeat Simple_repeat 1 174 0 574 52 104 12 chr3 5260311 5260624 -222263954 + (TA)n Simple_repeat Simple_repeat 1 341 0 347 228 232 0 chr3 5260649 5260756 -222263822 + MER5A DNA MER1_type 60 178 0 502 54 27 0 chr3 5261170 5261244 -222263334 + (TCTA)n Simple_repeat Simple_repeat 3 78 0 351 335 107 52 chr3 5262723 5263189 -222261389 + MLT1K LTR MaLR 2 493 -95 527 287 129 30 chr3 5263944 5264855 -222259723 + L1ME3A LINE L1 593 1639 -4671 1297 236 70 90 chr3 5265085 5265870 -222258708 + L1ME3A LINE L1 4439 5207 -922 268 204 62 97 chr3 5265876 5265989 -222258589 + L1ME3A LINE L1 5837 5945 -208 335 270 130 55 chr3 5266029 5266229 -222258349 + L1ME3A LINE L1 5939 6153 0 417 268 149 30 chr3 5266284 5266452 -222258126 + MIR SINE MIR 25 212 -50 294 297 39 42 chr3 5266735 5266905 -222257673 - MIR SINE MIR -69 139 21 540 226 0 0 chr3 5267833 5267939 -222256639 - L2 LINE L2 -19 3294 3189 251 281 0 0 chr3 5267949 5268013 -222256565 + MIR SINE MIR 84 147 -115 2334 98 41 120 chr3 5268454 5268914 -222255664 - MSTC LTR MaLR 0 428 5 1769 109 12 12 chr3 5270603 5270859 -222253719 + AluSg SINE Alu 37 292 -18 1111 282 92 5 chr3 5271268 5271669 -222252909 + L1ME3A LINE L1 5735 6170 0 348 157 22 101 chr3 5271773 5271862 -222252716 + L1ME3A LINE L1 6077 6158 -12 2482 46 3 0 chr3 5274029 5274333 -222250245 + AluY SINE Alu 1 305 -6 231 188 0 0 chr3 5274346 5274394 -222250184 + (TG)n Simple_repeat Simple_repeat 1 48 0 184 246 33 16 chr3 5274446 5274507 -222250071 + L2 LINE L2 2219 2280 -1034 414 343 164 21 chr3 5274533 5274906 -222249672 + L2 LINE L2 2845 3270 -2 24 0 0 0 chr3 5276866 5276890 -222247688 + AT_rich Low_complexity Low_complexity 1 24 0 480 310 28 5 chr3 5277495 5277711 -222246867 + L1M4 LINE L1 3730 3950 -2196 2687 108 10 0 chr3 5278249 5278649 -222245929 - L1PA14 LINE L1 -1 6160 5757 2199 106 3 0 chr3 5279180 5279473 -222245105 + AluSg SINE Alu 1 294 -16 3424 283 97 45 chr3 5279885 5281828 -222242750 + L2 LINE L2 1276 3313 0 637 324 51 19 chr3 5281990 5282305 -222242273 + L1M3c LINE L1 649 973 -5806 231 270 90 10 chr3 5282574 5282674 -222241904 + L1M3c LINE L1 1364 1471 -5378 1769 225 52 85 chr3 5283193 5284061 -222240517 + L1M3c LINE L1 1596 2438 -4411 15449 200 14 16 chr3 5284105 5287461 -222237117 - L1PA15 LINE L1 -1 6815 3453 198 0 0 0 chr3 5287461 5287483 -222237095 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1612 128 4 4 chr3 5287484 5287718 -222236860 - AluSc SINE Alu -32 277 44 15449 200 14 16 chr3 5287718 5288870 -222235708 - L1PA15 LINE L1 -3362 3454 2315 257 231 0 0 chr3 5288907 5288959 -222235619 + L1PA15-16 LINE L1 2365 2416 -4433 369 237 11 0 chr3 5288974 5289067 -222235511 - L1PA15 LINE L1 -5129 1658 1565 * 5831 259 94 34 chr3 5289065 5291244 -222233334 - L1PA13 LINE L1 -4481 2316 2 2140 256 51 24 chr3 5291259 5292630 -222231948 + L1M1 LINE L1 2831 4243 -3322 1050 172 0 22 chr3 5292641 5292868 -222231710 + L1 LINE L1 5111 5332 -814 432 198 69 0 chr3 5292867 5292968 -222231610 + L1MA9 LINE L1 6167 6274 -38 * 300 318 74 7 chr3 5292971 5293119 -222231459 + L1M LINE L1 5272 5429 -2613 460 352 73 40 chr3 5293737 5294064 -222230514 + L1MEd LINE L1 458 795 -5324 7946 88 44 7 chr3 5294170 5296534 -222228044 + L1PB1 LINE L1 1 2614 -4249 2082 165 18 12 chr3 5296544 5297038 -222227540 + L1PB1 LINE L1 2803 3309 -3553 27679 109 48 44 chr3 5297049 5303167 -222221411 + L1PA7 LINE L1 12 6154 0 4127 226 18 5 chr3 5303169 5303739 -222220839 + L1PB1 LINE L1 3299 3893 -2969 216 0 0 0 chr3 5303739 5303763 -222220815 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 4127 226 18 5 chr3 5303763 5304281 -222220297 + L1PB1 LINE L1 3893 4402 -2460 6113 159 12 8 chr3 5304288 5306431 -222218147 + L1PB1 LINE L1 4719 6865 -2 300 291 181 0 chr3 5306524 5306651 -222217927 + L1ME LINE L1 5562 5711 -410 3184 121 20 69 chr3 5306709 5307263 -222217315 + MER1A DNA MER1_type 1 527 0 319 340 20 0 chr3 5307686 5307786 -222216792 - L2 LINE L2 -41 3272 3171 1620 177 17 9 chr3 5308097 5308447 -222216131 - L1MA5 LINE L1 -5 6295 5943 2892 166 5 6 chr3 5308447 5309097 -222215481 + L1MA5 LINE L1 5186 5834 -466 348 277 121 40 chr3 5309354 5309502 -222215076 - MIR3 SINE MIR -43 165 7 207 245 20 20 chr3 5311413 5311462 -222213116 - MER5A DNA MER1_type -31 158 110 1063 284 48 48 chr3 5311467 5311992 -222212586 - MLT1H1 LTR MaLR -6 549 25 429 289 55 77 chr3 5312011 5312322 -222212256 - MLT1H1-int LTR MaLR 0 1371 1068 1245 286 91 45 chr3 5313036 5313113 -222211465 + L1M4 LINE L1 992 1064 -5318 2155 109 10 0 chr3 5313113 5313406 -222211172 + AluSx SINE Alu 1 296 -16 1245 286 91 45 chr3 5313406 5315042 -222209536 + L1M4 LINE L1 1064 2623 -3759 1963 142 28 0 chr3 5315042 5315324 -222209254 - AluSx SINE Alu -22 290 1 1245 286 91 45 chr3 5315324 5315335 -222209243 + L1M4 LINE L1 2623 2632 -3750 186 43 0 0 chr3 5315335 5315358 -222209220 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 1245 286 91 45 chr3 5315358 5315648 -222208930 + L1M4 LINE L1 2632 3202 -3180 229 283 62 7 chr3 5315729 5315874 -222208704 + L1M4 LINE L1 5482 5634 -748 4874 121 7 5 chr3 5315883 5316627 -222207951 - L1PA13 LINE L1 -11 6152 5408 2288 250 56 34 chr3 5316627 5317470 -222207108 + L1ME3A LINE L1 5305 6165 -5 348 196 155 0 chr3 5317493 5317590 -222206988 - Tigger6 DNA MER2_type 0 1597 1486 2348 100 0 13 chr3 5317590 5317606 -222206972 - AluSx SINE Alu -5 307 292 189 0 0 0 chr3 5317606 5317627 -222206951 + (TTAA)n Simple_repeat Simple_repeat 1 21 0 2348 100 0 13 chr3 5317627 5317921 -222206657 - AluSx SINE Alu -20 292 1 528 231 67 0 chr3 5317948 5318082 -222206496 - Tigger6 DNA MER2_type -1453 144 2 335 264 14 0 chr3 5318175 5318247 -222206331 + L2 LINE L2 3198 3270 -2 229 293 98 12 chr3 5318427 5318509 -222206069 - L2 LINE L2 -41 3231 3143 1820 158 0 39 chr3 5318614 5318924 -222205654 + AluJb SINE Alu 1 298 -14 185 270 45 11 chr3 5319320 5319409 -222205169 + L2 LINE L2 3118 3209 -104 470 300 123 43 chr3 5319937 5320481 -222204097 + L2 LINE L2 2448 3029 -243 200 313 45 15 chr3 5320485 5320552 -222204026 - MIR SINE MIR -186 76 8 305 316 0 35 chr3 5320756 5320870 -222203708 + MIR3 SINE MIR 2 111 -97 338 293 22 50 chr3 5320893 5321074 -222203504 + L2 LINE L2 2857 3032 -240 674 263 6 0 chr3 5321086 5321265 -222203313 - LTR16B LTR ERVL 0 464 285 463 250 38 12 chr3 5321318 5321478 -222203100 - LTR16B LTR ERVL -285 179 16 230 325 12 0 chr3 5321488 5321571 -222203007 + MIR3 SINE MIR 118 201 -7 180 333 21 0 chr3 5322108 5322156 -222202422 - L2 LINE L2 -85 3187 3139 423 304 33 72 chr3 5322259 5322535 -222202043 - MER102b DNA MER1_type -34 307 43 288 304 6 17 chr3 5323208 5323345 -222201233 + GA-rich Low_complexity Low_complexity 1 135 0 447 336 61 42 chr3 5326113 5326538 -222198040 + MLT1K LTR MaLR 154 586 -2 539 208 60 140 chr3 5326837 5327102 -222197476 - L2 LINE L2 -15 3298 3055 1089 170 21 30 chr3 5327177 5327412 -222197166 + L1MB7 LINE L1 5587 5819 -365 1593 223 119 10 chr3 5327420 5327900 -222196678 + MER34 LTR ERV1 11 542 0 1498 163 14 3 chr3 5327900 5328182 -222196396 + L1MB7 LINE L1 5809 6093 -91 300 117 50 0 chr3 5328321 5328381 -222196197 + L1MB8 LINE L1 6115 6177 -1 1366 233 41 41 chr3 5328656 5329046 -222195532 - MLT1B LTR MaLR 0 390 1 252 385 24 12 chr3 5329757 5329923 -222194655 + MIR SINE MIR 11 178 -84 250 264 11 66 chr3 5329980 5330071 -222194507 + L2 LINE L2 3227 3312 -1 4311 180 42 13 chr3 5330171 5330915 -222193663 + L1MB3 LINE L1 5188 5974 -209 1737 157 52 0 chr3 5330915 5331201 -222193377 + AluJb SINE Alu 2 302 -10 4311 180 42 13 chr3 5331201 5331410 -222193168 + L1MB3 LINE L1 5974 6175 -8 213 271 17 0 chr3 5331671 5331730 -222192848 + (CA)n Simple_repeat Simple_repeat 2 61 0 1907 151 20 7 chr3 5331796 5332095 -222192483 - AluJb SINE Alu -8 304 2 25 0 0 0 chr3 5332104 5332129 -222192449 + AT_rich Low_complexity Low_complexity 1 25 0 556 187 174 0 chr3 5332942 5333097 -222191481 + L1MB7 LINE L1 5649 5830 -354 597 203 39 0 chr3 5333098 5333251 -222191327 + L1MB7 LINE L1 6010 6168 -16 220 345 60 0 chr3 5333288 5333404 -222191174 - L2 LINE L2 -398 2916 2794 269 330 43 0 chr3 5334211 5334326 -222190252 - L2 LINE L2 0 3313 3194 741 250 74 57 chr3 5334897 5335249 -222189329 - L1MD2 LINE L1 -65 6294 5937 2076 138 0 0 chr3 5336931 5337229 -222187349 + AluSx SINE Alu 1 298 -14 184 410 43 0 chr3 5337698 5337815 -222186763 - MIR3 SINE MIR -3 205 84 222 311 57 77 chr3 5338000 5338248 -222186330 + L2 LINE L2 2836 3078 -194 287 290 80 12 chr3 5338704 5338866 -222185712 - L1MD2 LINE L1 -343 5778 5606 249 341 0 12 chr3 5338999 5339084 -222185494 + L2 LINE L2 2965 3048 -224 969 266 60 43 chr3 5339361 5339729 -222184849 + MLT1K LTR MaLR 209 582 -6 1934 158 0 3 chr3 5340735 5341032 -222183546 - AluJb SINE Alu -16 296 1 392 302 68 63 chr3 5341108 5341505 -222183073 - L1MC4a LINE L1 -1903 5905 5507 312 330 102 19 chr3 5341768 5341983 -222182595 - L1MC4a LINE L1 -762 5384 5152 304 157 43 43 chr3 5342739 5342809 -222181769 + L1ME4a LINE L1 5978 6047 -74 22 0 0 0 chr3 5343438 5343460 -222181118 + AT_rich Low_complexity Low_complexity 1 22 0 344 200 27 91 chr3 5343752 5343844 -222180734 - MLT1K LTR MaLR -284 304 219 2549 104 64 7 chr3 5343844 5344249 -222180329 - MSTA LTR MaLR 0 428 1 344 200 27 91 chr3 5344249 5344266 -222180312 - MLT1K LTR MaLR -369 219 202 1941 239 21 23 chr3 5345577 5346095 -222178483 + L1MEc LINE L1 27 543 -5853 2169 108 0 3 chr3 5346806 5347101 -222177477 - AluSc SINE Alu 0 309 16 397 266 45 52 chr3 5347127 5347281 -222177297 + MLT1J2 LTR MaLR 275 427 -23 363 23 0 0 chr3 5347342 5347386 -222177192 + (TG)n Simple_repeat Simple_repeat 2 45 0 2587 39 0 0 chr3 5347865 5348170 -222176408 + AluYa5 SINE Alu 1 305 -6 438 317 12 30 chr3 5348627 5348794 -222175784 - L2 LINE L2 -3 3310 3147 283 304 7 15 chr3 5348820 5348955 -222175623 + (TA)n Simple_repeat Simple_repeat 1 134 0 234 150 0 0 chr3 5348963 5349003 -222175575 + (TG)n Simple_repeat Simple_repeat 2 41 0 518 251 163 38 chr3 5349007 5349246 -222175332 - L2 LINE L2 -182 3131 2863 409 301 30 54 chr3 5349618 5349821 -222174757 - MIR3 SINE MIR -3 205 8 1659 144 97 0 chr3 5350194 5350472 -222174106 + AluSx SINE Alu 1 305 -7 2247 174 42 3 chr3 5351301 5351685 -222172893 - MER47B DNA MER2_type 0 418 20 260 299 16 55 chr3 5353710 5353837 -222170741 - MLT1K LTR MaLR -248 340 219 433 316 29 37 chr3 5354029 5354222 -222170356 + MIR SINE MIR 3 191 -63 213 98 12 98 chr3 5354652 5354734 -222169844 + (GGGAGA)n Simple_repeat Simple_repeat 2 76 0 1449 108 5 0 chr3 5355185 5355397 -222169181 + L1PB1 LINE L1 5929 6141 -10 322 330 18 28 chr3 5355811 5356029 -222168549 + L1ME LINE L1 5360 5575 -546 2309 100 3 0 chr3 5356602 5356901 -222167677 - AluSg SINE Alu -10 300 1 37 69 0 0 chr3 5357624 5357696 -222166882 + AT_rich Low_complexity Low_complexity 1 72 0 208 267 0 80 chr3 5357702 5357777 -222166801 - MIR SINE MIR -116 146 78 2820 313 96 32 chr3 5359133 5360915 -222163663 + L2 LINE L2 1414 3313 0 212 271 14 29 chr3 5361183 5361253 -222163325 + L2 LINE L2 2923 2991 -322 722 245 76 43 chr3 5361385 5361718 -222162860 + L1ME LINE L1 5266 5610 -554 284 126 13 82 chr3 5361751 5361910 -222162668 + (TA)n Simple_repeat Simple_repeat 2 149 0 529 224 177 47 chr3 5361981 5362235 -222162343 + MLT1E LTR MaLR 304 590 -3 566 221 21 0 chr3 5362287 5362427 -222162151 - Charlie4 DNA MER1_type -9 1952 1810 330 228 13 0 chr3 5362616 5362695 -222161883 - L1M4 LINE L1 -1536 4610 4531 420 259 122 14 chr3 5362789 5362936 -222161642 - MIR SINE MIR -12 250 88 594 177 9 18 chr3 5363153 5363266 -222161312 + LTR52 LTR ERVL 6 117 -304 1341 211 53 12 chr3 5363296 5363619 -222160959 + LTR52 LTR ERVL 86 421 0 353 261 164 42 chr3 5364358 5364630 -222159948 - L1M4 LINE L1 -1630 4516 4278 189 0 0 0 chr3 5364630 5364651 -222159927 + (TAA)n Simple_repeat Simple_repeat 1 21 0 353 261 164 42 chr3 5364651 5364904 -222159674 - L1M4 LINE L1 -1868 4278 3927 428 343 71 23 chr3 5366125 5366559 -222158019 + L1M4 LINE L1 4779 5233 -913 581 274 62 6 chr3 5366608 5366787 -222157791 - MIR SINE MIR -9 253 65 471 263 70 22 chr3 5366791 5367054 -222157524 + L1M2 LINE L1 5266 5535 -658 26 50 0 0 chr3 5367522 5367562 -222157016 + AT_rich Low_complexity Low_complexity 1 40 0 15469 34 0 0 chr3 5369786 5372421 -222152157 + L1PA3 LINE L1 3519 6155 0 1654 138 0 0 chr3 5373936 5374167 -222150411 - AluJb SINE Alu -9 303 73 230 154 0 0 chr3 5374963 5375002 -222149576 - L2 LINE L2 -10 3262 3224 * 482 316 158 0 chr3 5374969 5375178 -222149400 - MIR SINE MIR -10 252 11 274 309 125 13 chr3 5376397 5376549 -222148029 - MLT1K LTR MaLR -8 580 412 390 253 20 33 chr3 5376602 5376752 -222147826 - L1ME1 LINE L1 -23 6143 5996 1375 246 73 45 chr3 5378229 5378802 -222145776 + L1MB4 LINE L1 4744 5332 -814 10287 199 47 15 chr3 5378802 5381930 -222142648 + L1MA4A LINE L1 2 3437 -3411 5814 142 45 27 chr3 5381955 5384107 -222140471 + L1MA4A LINE L1 4804 7000 -5 3911 185 30 19 chr3 5384097 5384386 -222140192 + L1MB4 LINE L1 5312 5596 -584 * 1691 182 16 0 chr3 5384386 5384693 -222139885 + AluJb SINE Alu 1 312 0 3911 185 30 19 chr3 5384693 5385226 -222139352 + L1MB4 LINE L1 5596 6143 -37 3382 176 16 3 chr3 5385249 5385886 -222138692 + L1MB1 LINE L1 5523 6167 -1 245 286 0 0 chr3 5386238 5386294 -222138284 - MIR SINE MIR -65 143 88 1966 112 13 49 chr3 5386626 5386930 -222137648 + AluSx SINE Alu 4 296 -16 290 235 0 108 chr3 5387044 5387100 -222137478 + MIR SINE MIR 102 144 -118 1620 185 56 3 chr3 5387100 5387424 -222137154 + MER2 DNA MER2_type 2 342 -2 290 235 0 108 chr3 5387424 5387469 -222137109 + MIR SINE MIR 144 192 -70 370 239 92 0 chr3 5388475 5388605 -222135973 - MLT1K LTR MaLR -66 522 381 523 208 104 27 chr3 5390114 5390297 -222134281 - MIR SINE MIR -1 261 65 331 252 22 50 chr3 5390342 5390481 -222134097 + L1ME4a LINE L1 5987 6121 0 429 319 63 95 chr3 5390562 5391101 -222133477 + L2 LINE L2 2294 2806 -508 2307 125 11 6 chr3 5391101 5391454 -222133124 + THE1A LTR MaLR 1 355 0 429 319 63 95 chr3 5391454 5391617 -222132961 + L2 LINE L2 2806 2973 -341 201 363 20 29 chr3 5391669 5391771 -222132807 - L2 LINE L2 0 3272 3172 367 229 28 18 chr3 5391773 5391882 -222132696 - MER81 DNA DNA -1 113 4 25 31 0 0 chr3 5392012 5392044 -222132534 + AT_rich Low_complexity Low_complexity 1 32 0 508 255 21 28 chr3 5392351 5392496 -222132082 + MIR SINE MIR 118 261 -1 205 308 15 0 chr3 5394531 5394596 -222129982 + L2 LINE L2 3248 3313 0 2177 95 64 14 chr3 5396643 5397000 -222127578 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr3 5397228 5397251 -222127327 + AT_rich Low_complexity Low_complexity 1 23 0 282 56 0 0 chr3 5397815 5397851 -222126727 + (GA)n Simple_repeat Simple_repeat 1 36 0 283 367 69 9 chr3 5398424 5398642 -222125936 + MIR SINE MIR 31 261 -1 240 389 20 20 chr3 5398694 5398843 -222125735 + L3 LINE CR1 1337 1485 -92 426 247 111 82 chr3 5400552 5400795 -222123783 - MIR SINE MIR -9 253 4 191 306 134 15 chr3 5401003 5401137 -222123441 - L3 LINE CR1 -27 1550 1401 406 368 41 59 chr3 5401513 5402005 -222122573 - L3 LINE CR1 -329 1248 766 2576 157 38 14 chr3 5402082 5402579 -222121999 + L1PA16 LINE L1 5654 6162 -4 517 322 102 82 chr3 5402957 5404080 -222120498 - L2 LINE L2 0 3272 2113 183 80 0 0 chr3 5404285 5404310 -222120268 + (TA)n Simple_repeat Simple_repeat 1 25 0 2474 83 0 0 chr3 5404368 5404670 -222119908 - AluSq SINE Alu -11 302 1 268 290 121 16 chr3 5404782 5404906 -222119672 - Charlie8 DNA MER1_type -2161 256 120 1029 122 6 0 chr3 5404947 5405103 -222119475 + L1PA10 LINE L1 6006 6162 -6 435 294 183 11 chr3 5406270 5406450 -222118128 - MIR SINE MIR -26 236 26 291 288 0 12 chr3 5406449 5406529 -222118049 + L2 LINE L2 3231 3309 -4 * 2095 202 52 2 chr3 5407026 5407432 -222117146 + MSTB LTR MaLR 1 426 0 297 173 39 0 chr3 5407643 5407695 -222116883 + L2 LINE L2 3219 3272 0 2236 88 10 3 chr3 5409602 5409896 -222114682 + AluSc SINE Alu 1 296 -13 470 344 14 19 chr3 5409955 5410170 -222114408 - MIR SINE MIR -3 259 46 322 338 25 25 chr3 5410931 5411088 -222113490 - MIR SINE MIR -94 168 12 3883 137 82 0 chr3 5411120 5411769 -222112809 - Tigger3(Golem) DNA MER2_type -1 3027 2318 405 0 0 0 chr3 5411769 5411814 -222112764 + (CA)n Simple_repeat Simple_repeat 2 46 0 3883 137 82 0 chr3 5411814 5411851 -222112727 - Tigger3(Golem) DNA MER2_type -710 2318 2285 551 192 30 0 chr3 5411859 5411958 -222112620 - Tigger3(Golem) DNA MER2_type -2926 103 2 854 140 0 35 chr3 5412237 5412380 -222112198 - FRAM SINE Alu -1 175 38 1236 227 18 21 chr3 5412789 5413075 -222111503 + MER58B DNA MER1_type 48 332 -9 246 287 122 26 chr3 5413115 5413230 -222111348 - MIR SINE MIR -20 242 117 736 243 86 19 chr3 5414099 5414309 -222110269 - MIR SINE MIR 0 262 39 603 235 176 6 chr3 5416542 5416712 -222107866 - MIR SINE MIR -6 256 58 265 277 57 69 chr3 5417655 5417814 -222106764 - L2 LINE L2 -3 3310 3154 524 289 7 0 chr3 5417957 5418106 -222106472 + MER5C DNA MER1_type 7 156 -168 27 0 0 0 chr3 5418108 5418135 -222106443 + AT_rich Low_complexity Low_complexity 1 27 0 381 266 0 18 chr3 5418480 5418589 -222105989 - L1ME1 LINE L1 -5 6161 6055 403 262 157 58 chr3 5418733 5418905 -222105673 - L1ME LINE L1 -5862 208 20 327 216 119 8 chr3 5418911 5419045 -222105533 + MER5C DNA MER1_type 173 321 -3 365 284 155 14 chr3 5419063 5419211 -222105367 + MER5B DNA MER1_type 7 175 -3 789 196 98 12 chr3 5419754 5419927 -222104651 + MER5A DNA MER1_type 1 188 -1 1269 127 0 0 chr3 5420529 5420732 -222103846 - AluSg/x SINE Alu 0 312 120 253 119 0 0 chr3 5420732 5420771 -222103807 - Alu SINE Alu -266 36 2 1691 177 3 20 chr3 5421760 5422059 -222102519 + AluJb SINE Alu 1 294 -18 1515 232 85 0 chr3 5422245 5422585 -222101993 - Cheshire DNA MER1_type -2051 369 1 1055 249 69 54 chr3 5422587 5423108 -222101470 - L1ME1 LINE L1 -2020 5788 5260 277 303 11 22 chr3 5423126 5423215 -222101363 + L2 LINE L2 3190 3277 -36 421 315 66 39 chr3 5423239 5423525 -222101053 - L1ME1 LINE L1 -913 5233 4940 301 87 0 0 chr3 5423788 5423834 -222100744 - L1MB7 LINE L1 -9 6175 6130 232 191 24 0 chr3 5423900 5423942 -222100636 - L1 LINE L1 -2029 4117 4075 249 330 9 9 chr3 5424618 5424724 -222099854 - MIR SINE MIR -4 258 153 215 292 246 8 chr3 5424742 5424872 -222099706 + MIR SINE MIR 15 175 -87 255 350 131 0 chr3 5424974 5425111 -222099467 - MIR SINE MIR -94 168 14 2488 167 24 17 chr3 5425111 5425572 -222099006 - MLT1C LTR MaLR 0 467 4 21 0 0 0 chr3 5425623 5425644 -222098934 + AT_rich Low_complexity Low_complexity 1 21 0 2906 109 17 45 chr3 5425644 5426110 -222098468 - LTR46 LTR ERV1 -7 453 1 346 282 53 23 chr3 5426133 5426264 -222098314 - MIR SINE MIR -21 241 107 190 340 92 13 chr3 5426546 5426699 -222097879 - L2 LINE L2 -410 2904 2740 703 34 0 0 chr3 5429573 5429661 -222094917 - L1PA3 LINE L1 -1 6154 6067 184 382 6 77 chr3 5430056 5430226 -222094352 + MIR3 SINE MIR 40 197 -11 180 349 0 48 chr3 5430268 5430351 -222094227 + L3 LINE CR1 1488 1566 -11 468 282 75 21 chr3 5431072 5431260 -222093318 - MIR SINE MIR -16 246 49 1433 221 86 45 chr3 5431288 5431732 -222092846 - MLT1C LTR MaLR 0 467 6 196 260 0 65 chr3 5432654 5432731 -222091847 - MIR SINE MIR -83 179 108 192 162 108 0 chr3 5433883 5433920 -222090658 - L2 LINE L2 -75 3238 3198 2401 56 0 3 chr3 5434169 5434471 -222090107 - AluY SINE Alu -10 301 1 2317 70 3 6 chr3 5434577 5434916 -222089662 + AluY SINE Alu 1 338 0 240 347 53 0 chr3 5434930 5435005 -222089573 - L2 LINE L2 -60 3212 3134 193 250 0 23 chr3 5435671 5435715 -222088863 + L2 LINE L2 3214 3256 -16 242 321 19 25 chr3 5435995 5436154 -222088424 - L1ME4a LINE L1 -165 5956 5799 193 242 65 16 chr3 5436555 5436617 -222087961 + L3b LINE CR1 1401 1465 -118 350 289 65 20 chr3 5436836 5437037 -222087541 - L1ME4a LINE L1 -1321 4825 4616 661 260 115 40 chr3 5437351 5437647 -222086931 - L1ME1 LINE L1 -9 6393 6076 520 142 150 0 chr3 5437650 5437770 -222086808 + L1ME LINE L1 5574 5711 -455 * 3249 238 74 3 chr3 5437764 5438696 -222085882 - L1ME1 LINE L1 -1198 5184 4187 * 12183 178 78 9 chr3 5438694 5441642 -222082936 - L1ME1 LINE L1 -3207 3175 5 459 314 66 43 chr3 5441737 5442040 -222082538 + L1ME LINE L1 5494 5803 -318 205 191 16 48 chr3 5442153 5442216 -222082362 + (CATATA)n Simple_repeat Simple_repeat 3 63 0 273 362 58 31 chr3 5442353 5442577 -222082001 - MIR SINE MIR 0 262 33 336 292 149 30 chr3 5444019 5444187 -222080391 - MIR3 SINE MIR -18 190 3 318 340 32 26 chr3 5444387 5444543 -222080035 - MIR3 SINE MIR -19 189 33 22 56 0 0 chr3 5445502 5445538 -222079040 + AT_rich Low_complexity Low_complexity 1 36 0 362 330 58 19 chr3 5446322 5446528 -222078050 + MLT1H LTR MaLR 40 253 -296 187 275 288 0 chr3 5446756 5446836 -222077742 + L2 LINE L2 3162 3264 -8 390 195 121 10 chr3 5446995 5447143 -222077435 - MER20 DNA MER1_type 0 219 1 401 309 46 29 chr3 5447709 5447884 -222076694 + MER5B DNA MER1_type 1 178 0 502 331 89 15 chr3 5447884 5448227 -222076351 + L2 LINE L2 2698 3062 -251 810 128 3 1 chr3 5448230 5448360 -222076218 - L1PA10 LINE L1 -637 5531 5397 4649 81 3 3 chr3 5448360 5448985 -222075593 + L1PA10 LINE L1 5541 6168 0 810 128 3 1 chr3 5448985 5448998 -222075580 - L1P4 LINE L1 -771 5397 5386 461 256 105 42 chr3 5449003 5449194 -222075384 + L2 LINE L2 3105 3307 -6 270 298 158 25 chr3 5449236 5449394 -222075184 - MIR SINE MIR -37 225 47 258 337 101 22 chr3 5449461 5449639 -222074939 + MIR3 SINE MIR 3 194 -14 411 320 130 8 chr3 5449652 5449905 -222074673 + L3 LINE CR1 1288 1571 -6 1209 267 73 9 chr3 5451093 5451434 -222073144 - MLT1E2 LTR MaLR 0 626 264 201 161 0 0 chr3 5452024 5452055 -222072523 + (TATATG)n Simple_repeat Simple_repeat 1 31 0 432 0 0 0 chr3 5452190 5452238 -222072340 + (CA)n Simple_repeat Simple_repeat 2 49 0 554 210 8 8 chr3 5452736 5452855 -222071723 - MLT1D LTR MaLR -65 440 322 1158 206 86 0 chr3 5453288 5453555 -222071023 - ERVL-B1 LTR ERVL -4785 979 690 1987 235 38 8 chr3 5453726 5454352 -222070226 - ERVL-B1 LTR ERVL -5030 624 1 267 109 0 43 chr3 5454356 5454402 -222070176 - MLT2B1 LTR ERVL -4 516 473 289 365 0 0 chr3 5454423 5454508 -222070070 - MIR SINE MIR -62 146 62 351 313 41 27 chr3 5455551 5455698 -222068880 + MIR SINE MIR 96 244 -18 2523 71 0 0 chr3 5455739 5456049 -222068529 - AluY SINE Alu -1 310 1 426 176 88 0 chr3 5456127 5456218 -222068360 + L2 LINE L2 3170 3268 -4 266 293 91 10 chr3 5456224 5456323 -222068255 + MIR SINE MIR 86 192 -70 4781 163 30 5 chr3 5457098 5458136 -222066442 - L1PA16 LINE L1 -3 6163 5102 835 192 123 78 chr3 5458666 5458810 -222065768 + MLT1A1 LTR MaLR 1 137 -228 2293 116 0 3 chr3 5458810 5459113 -222065465 + AluSg SINE Alu 1 302 -8 835 192 123 78 chr3 5459113 5459301 -222065277 + MLT1A1 LTR MaLR 137 348 -17 2657 158 16 28 chr3 5459361 5459862 -222064716 + Tigger1 DNA MER2_type 5 499 -1919 * 9960 138 29 1 chr3 5459860 5461534 -222063044 + Tigger1 DNA MER2_type 694 2414 -4 555 274 27 43 chr3 5461820 5462006 -222062572 + MER5A DNA MER1_type 7 189 0 653 194 47 29 chr3 5462013 5462183 -222062395 + MER5B DNA MER1_type 6 178 0 256 349 113 5 chr3 5462332 5462544 -222062034 + L2 LINE L2 3079 3313 0 536 262 0 0 chr3 5463565 5463706 -222060872 - L1MA10 LINE L1 -4 6330 6190 21 0 0 0 chr3 5464128 5464149 -222060429 + AT_rich Low_complexity Low_complexity 1 21 0 6158 129 83 24 chr3 5464206 5465368 -222059210 - Tigger3b DNA MER2_type 0 1231 1 542 215 18 6 chr3 5465710 5465867 -222058711 + L1M2 LINE L1 5468 5630 -536 189 0 0 0 chr3 5465969 5465990 -222058588 + (TATG)n Simple_repeat Simple_repeat 4 24 0 232 338 59 0 chr3 5466167 5466235 -222058343 + L2 LINE L2 3201 3272 0 309 248 88 40 chr3 5466488 5466613 -222057965 + L1ME LINE L1 5597 5727 -394 419 215 15 0 chr3 5468037 5468143 -222056435 + MER5A DNA MER1_type 4 111 -78 233 321 73 22 chr3 5468438 5468575 -222056003 - MIR SINE MIR -67 195 52 1776 230 113 33 chr3 5468669 5469247 -222055331 - MLT1E2 LTR MaLR 0 626 3 206 103 0 26 chr3 5470330 5470369 -222054209 + (GA)n Simple_repeat Simple_repeat 1 38 0 229 271 42 93 chr3 5471142 5471260 -222053318 - L2 LINE L2 -16 3256 3145 237 263 0 0 chr3 5471361 5471418 -222053160 - L2 LINE L2 -12 3260 3204 601 286 49 16 chr3 5471807 5471992 -222052586 - MIR SINE MIR -61 201 11 230 250 43 43 chr3 5472780 5472872 -222051706 + MIR SINE MIR 96 187 -75 183 283 54 22 chr3 5474179 5474271 -222050307 + MIR SINE MIR 168 262 0 330 303 189 0 chr3 5476527 5476659 -222047919 + MIR SINE MIR 98 254 -8 2561 52 0 0 chr3 5478601 5478909 -222045669 + AluY SINE Alu 1 308 -3 187 304 104 55 chr3 5478928 5479129 -222045449 + MIR3 SINE MIR 2 217 -45 274 299 28 9 chr3 5479450 5479557 -222045021 + MIR3 SINE MIR 90 198 -10 594 220 0 38 chr3 5479598 5479730 -222044848 + MIR3 SINE MIR 71 197 -11 1889 174 17 6 chr3 5479743 5480088 -222044490 + MER93b LTR ERV1 1 349 -24 7048 132 14 18 chr3 5480938 5483041 -222041537 + L1PA13 LINE L1 4052 6139 -24 3119 221 59 9 chr3 5483217 5484490 -222040088 - L1MB7 LINE L1 0 6184 4844 1077 168 16 16 chr3 5484503 5484693 -222039885 - AluJo SINE Alu -11 301 112 956 285 0 12 chr3 5484693 5484939 -222039639 + MIR SINE MIR 3 245 -17 3227 160 22 2 chr3 5485252 5485791 -222038787 + MER44D DNA MER2_type 1 605 0 286 332 103 23 chr3 5486074 5486288 -222038290 - MIR SINE MIR -2 260 30 1395 187 28 0 chr3 5486423 5486707 -222037871 + L1MA4A LINE L1 6001 6292 -11 2333 35 11 0 chr3 5487242 5487529 -222037049 + AluY SINE Alu 1 290 -21 549 80 0 0 chr3 5487544 5487619 -222036959 + (TG)n Simple_repeat Simple_repeat 2 76 0 294 257 109 0 chr3 5487672 5487773 -222036805 - MER103 DNA DNA -46 120 9 455 221 174 35 chr3 5487912 5488084 -222036494 + MER58C DNA MER1_type 1 196 -19 427 288 56 30 chr3 5488297 5488495 -222036083 - L3 LINE CR1 -332 1245 1043 1509 126 16 0 chr3 5488598 5488852 -222035726 - Tigger2 DNA MER2_type 0 2718 2461 3745 150 50 17 chr3 5488918 5489636 -222034942 - Tigger2 DNA MER2_type -1974 744 3 314 284 21 100 chr3 5489700 5489890 -222034688 + MER102a DNA MER1_type 152 326 -4 307 354 0 15 chr3 5490166 5490296 -222034282 + MIR3 SINE MIR 12 139 -69 218 268 0 18 chr3 5491515 5491571 -222033007 + MIR3 SINE MIR 131 185 -23 306 323 144 20 chr3 5491926 5492121 -222032457 - MIR SINE MIR -4 258 40 1605 176 3 24 chr3 5492851 5493181 -222031397 + AluJo SINE Alu 1 324 0 248 292 0 4 chr3 5493839 5493921 -222030657 - MLT1H LTR MaLR -2 550 474 675 234 61 61 chr3 5494019 5494280 -222030298 - MLT1H LTR MaLR -249 300 40 315 0 0 0 chr3 5494306 5494341 -222030237 + (TC)n Simple_repeat Simple_repeat 1 35 0 * 336 102 0 0 chr3 5494340 5494389 -222030189 + (CA)n Simple_repeat Simple_repeat 1 49 0 1315 303 47 45 chr3 5494407 5494935 -222029643 + MLT1K LTR MaLR 23 551 -37 195 42 0 0 chr3 5495063 5495087 -222029491 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 225 65 0 0 chr3 5495974 5496005 -222028573 + (TG)n Simple_repeat Simple_repeat 2 32 0 480 320 100 42 chr3 5496548 5496929 -222027649 - L2 LINE L2 -41 3231 2829 195 222 48 63 chr3 5497284 5497347 -222027231 + L2 LINE L2 3252 3313 0 3659 134 11 0 chr3 5497833 5498354 -222026224 + MER1A DNA MER1_type 1 527 -2 21 36 0 0 chr3 5498521 5498549 -222026029 + AT_rich Low_complexity Low_complexity 1 28 0 3429 168 26 22 chr3 5498737 5499358 -222025220 + L1MB5 LINE L1 5539 6161 -13 23 0 0 0 chr3 5499365 5499388 -222025190 + AT_rich Low_complexity Low_complexity 1 23 0 472 285 58 7 chr3 5499864 5500001 -222024577 - MIR SINE MIR -91 171 28 390 321 45 0 chr3 5500500 5500634 -222023944 + L2 LINE L2 3133 3272 0 417 291 71 0 chr3 5500832 5500959 -222023619 - L2 LINE L2 0 3272 3137 674 332 43 8 chr3 5502244 5502479 -222022099 + MIR SINE MIR 20 262 0 376 278 93 0 chr3 5502621 5502729 -222021849 - MIR3 SINE MIR 0 208 91 369 0 0 0 chr3 5503457 5503498 -222021080 + (T)n Simple_repeat Simple_repeat 1 41 0 328 264 60 39 chr3 5505057 5505239 -222019339 + MIR SINE MIR 77 262 0 254 306 83 0 chr3 5505982 5506090 -222018488 + MIR SINE MIR 73 189 -73 1907 202 58 32 chr3 5506387 5506818 -222017760 + MER74B LTR ERVL 55 496 -126 3951 147 31 38 chr3 5506821 5507537 -222017041 + MER50 LTR ERV1 1 711 -23 785 142 24 8 chr3 5507543 5507670 -222016908 + MER74B LTR ERVL 491 619 -3 29 28 0 0 chr3 5508109 5508145 -222016433 + AT_rich Low_complexity Low_complexity 1 36 0 540 309 124 0 chr3 5508728 5508945 -222015633 + MIR SINE MIR 16 259 -3 188 347 97 35 chr3 5509683 5509713 -222014865 - MER5B DNA MER1_type -1 177 150 1032 62 0 0 chr3 5509713 5509858 -222014720 + (CAT)n Simple_repeat Simple_repeat 1 145 0 553 217 35 0 chr3 5509858 5509973 -222014605 + MER5A DNA MER1_type 49 167 -22 709 297 122 30 chr3 5510843 5511318 -222013260 + L2 LINE L2 2763 3313 0 442 240 68 48 chr3 5511839 5511986 -222012592 + MIR3 SINE MIR 15 168 -63 301 231 106 48 chr3 5512052 5512156 -222012422 - MIR SINE MIR -131 131 22 217 243 63 12 chr3 5512567 5512652 -222011926 + MIR SINE MIR 70 154 -66 392 246 111 8 chr3 5512816 5512942 -222011636 + LTR16C LTR ERVL 353 491 0 2116 178 117 42 chr3 5512974 5513578 -222011000 + MLT1E2 LTR MaLR 1 626 0 256 100 80 0 chr3 5513712 5513762 -222010816 - L1MA9 LINE L1 -38 6274 6221 4488 176 49 59 chr3 5513798 5514845 -222009733 - L1MA9 LINE L1 -38 6274 5211 294 281 65 51 chr3 5515647 5515812 -222008766 - MIR3 SINE MIR -8 200 34 667 282 29 67 chr3 5515885 5516229 -222008349 + L2 LINE L2 2641 2971 -343 597 260 25 69 chr3 5516265 5516416 -222008162 + L2 LINE L2 3119 3260 -53 1645 145 0 11 chr3 5516416 5516678 -222007900 + AluJo SINE Alu 51 309 -3 597 260 25 69 chr3 5516678 5516730 -222007848 + L2 LINE L2 3260 3313 0 404 294 9 9 chr3 5517997 5518106 -222006472 - MIR SINE MIR 0 262 154 666 303 0 15 chr3 5518131 5518329 -222006249 + MIR SINE MIR 19 213 -49 1432 267 75 50 chr3 5518480 5519082 -222005496 - MER21B LTR ERV1 -149 714 98 2585 23 3 10 chr3 5519217 5519516 -222005062 - AluY SINE Alu -14 297 1 210 259 134 9 chr3 5519792 5519904 -222004674 - MIR3 SINE MIR -5 203 78 21 36 0 0 chr3 5520591 5520619 -222003959 + AT_rich Low_complexity Low_complexity 1 28 0 778 250 81 21 chr3 5521042 5521278 -222003300 + MIR SINE MIR 2 251 -11 298 189 0 0 chr3 5522020 5522073 -222002505 - MLT1K LTR MaLR -11 577 525 5842 157 22 24 chr3 5522075 5523152 -222001426 + L1MA9 LINE L1 5237 6312 0 653 270 76 45 chr3 5523157 5523512 -222001066 - MLT1K LTR MaLR -53 535 170 216 270 16 32 chr3 5524014 5524077 -222000501 - L2 LINE L2 0 3313 3252 312 288 135 24 chr3 5524670 5524840 -221999738 + LTR16A LTR ERVL 260 448 -2 296 243 71 48 chr3 5525064 5525206 -221999372 - L2 LINE L2 -4 3268 3011 1729 206 116 12 chr3 5525285 5525708 -221998870 - MLT1C LTR MaLR 0 467 1 218 284 65 110 chr3 5525748 5525903 -221998675 + MIR SINE MIR 10 157 -105 869 296 33 36 chr3 5525944 5526275 -221998303 + MLT1I LTR MaLR 80 409 0 333 318 9 0 chr3 5526276 5526383 -221998195 + MIR SINE MIR 154 261 -1 912 231 62 5 chr3 5526507 5526715 -221997863 - MIR SINE MIR -10 252 33 2579 139 10 5 chr3 5527365 5527753 -221996825 - MLT1B LTR MaLR 0 390 1 255 214 121 79 chr3 5528067 5528207 -221996371 - MIR SINE MIR -51 211 66 1715 126 4 12 chr3 5528217 5528472 -221996106 - AluJb SINE Alu -43 269 17 21 0 0 0 chr3 5528519 5528540 -221996038 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 5529213 5529248 -221995330 + AT_rich Low_complexity Low_complexity 1 35 0 500 297 106 29 chr3 5529323 5529512 -221995066 - L1ME4a LINE L1 -216 5905 5732 2109 100 7 0 chr3 5529512 5529821 -221994757 + AluSx SINE Alu 1 311 0 500 297 106 29 chr3 5529821 5529970 -221994608 - L1ME4a LINE L1 -389 5732 5540 6796 90 17 0 chr3 5530160 5531224 -221993354 - L1PA12 LINE L1 0 6168 5104 206 273 0 0 chr3 5532582 5532626 -221991952 - L2 LINE L2 -7 3306 3263 * 220 314 119 22 chr3 5532593 5532778 -221991800 - MIR SINE MIR -12 250 48 1500 133 0 0 chr3 5533116 5533341 -221991237 - L1P LINE L1 -1032 5114 4890 347 265 71 0 chr3 5533969 5534067 -221990511 - MIR3 SINE MIR -23 185 81 272 195 13 39 chr3 5534325 5534402 -221990176 + T-rich Low_complexity Low_complexity 4 78 0 2784 229 21 57 chr3 5534656 5535373 -221989205 - LTR8 LTR ERV1 0 691 1 439 244 15 69 chr3 5535686 5535817 -221988761 + MIR SINE MIR 47 170 -92 574 255 16 10 chr3 5536071 5536250 -221988328 - MLT1C LTR MaLR 0 467 323 508 62 0 0 chr3 5536259 5536323 -221988255 - MADE1 DNA Mariner 0 80 17 1894 199 26 46 chr3 5536325 5536783 -221987795 + LTR2 LTR ERV1 1 449 0 987 196 49 85 chr3 5536798 5537104 -221987474 - MLT1C LTR MaLR -172 295 1 189 49 24 49 chr3 5537148 5537189 -221987389 + (TTATA)n Simple_repeat Simple_repeat 3 42 0 1557 239 59 11 chr3 5537312 5537684 -221986894 - MLT1B LTR MaLR 0 390 1 271 270 36 36 chr3 5538701 5538812 -221985766 - L2 LINE L2 0 3313 3203 304 197 53 92 chr3 5540006 5540158 -221984420 - L1MC5 LINE L1 -166 7795 7650 267 337 163 0 chr3 5540224 5540390 -221984188 + MIR SINE MIR 69 261 -1 746 312 69 52 chr3 5540469 5540930 -221983648 + L2 LINE L2 1894 2362 -952 1416 279 22 16 chr3 5541052 5541421 -221983157 - MLT1G1 LTR MaLR -209 386 16 654 309 94 62 chr3 5541421 5542211 -221982367 + L2 LINE L2 2348 3170 -143 2947 204 65 24 chr3 5542211 5542837 -221981741 + MER82 DNA MER2_type 1 652 -1 654 309 94 62 chr3 5542837 5542936 -221981642 + L2 LINE L2 3170 3264 -49 2193 128 0 0 chr3 5543126 5543423 -221981155 + AluSx SINE Alu 6 302 -10 255 133 0 0 chr3 5545187 5545232 -221979346 + (CA)n Simple_repeat Simple_repeat 1 45 0 2505 134 59 20 chr3 5545566 5545975 -221978603 - MSTA LTR MaLR 0 428 4 918 236 90 55 chr3 5546026 5546369 -221978209 + LTR16C LTR ERVL 17 371 -120 1501 225 35 52 chr3 5546389 5546793 -221977785 - MER21B LTR ERV1 -107 756 360 1238 190 0 5 chr3 5546831 5547047 -221977531 + AluJo SINE Alu 84 298 -14 534 172 57 146 chr3 5547098 5547290 -221977288 - MER21B LTR ERV1 -676 187 13 439 195 80 9 chr3 5547306 5547419 -221977159 + LTR16C LTR ERVL 371 491 0 2483 63 0 3 chr3 5549306 5549627 -221974951 + AluY SINE Alu 11 330 0 2194 144 57 36 chr3 5549733 5550121 -221974457 - MSTD LTR MaLR 0 396 1 311 254 9 118 chr3 5550712 5550822 -221973756 + MER81 DNA DNA 1 98 -16 248 265 81 37 chr3 5550927 5551063 -221973515 + MER20B DNA MER1_type 495 636 -147 272 187 53 67 chr3 5553309 5553384 -221971194 + MIR SINE MIR 31 104 -104 1252 198 108 35 chr3 5553392 5553440 -221971138 - MLT2B1 LTR ERVL 0 414 371 2730 96 19 16 chr3 5553440 5553803 -221970775 + THE1B LTR MaLR 1 364 0 1252 198 108 35 chr3 5553803 5554184 -221970394 - MLT2B1 LTR ERVL -43 371 1 1942 141 18 0 chr3 5554279 5554563 -221970015 - AluSx SINE Alu -15 297 9 1311 219 15 8 chr3 5554563 5554828 -221969750 - MLT1H LTR MaLR -275 274 8 245 268 18 0 chr3 5555152 5555208 -221969370 - MER102b DNA MER1_type 0 330 274 1814 193 0 0 chr3 5555318 5555613 -221968965 + AluJo SINE Alu 1 295 -17 661 194 12 0 chr3 5555624 5555784 -221968794 + GA-rich Low_complexity Low_complexity 1 162 0 299 348 17 8 chr3 5555857 5555975 -221968603 - MIR3 SINE MIR -49 159 41 795 183 0 0 chr3 5556958 5557078 -221967500 + FLAM_A SINE Alu 1 120 -13 286 226 250 32 chr3 5557512 5557636 -221966942 + MIR3 SINE MIR 33 183 -25 437 259 64 64 chr3 5557692 5557958 -221966620 - L2 LINE L2 -1 3312 3047 231 250 0 0 chr3 5558001 5558049 -221966529 + MIR SINE MIR 69 116 -92 921 241 0 5 chr3 5558053 5558244 -221966334 - MLT1D LTR MaLR 0 505 316 1132 246 113 19 chr3 5558362 5558732 -221965846 - MLT1E2 LTR MaLR -221 405 1 2647 24 0 0 chr3 5558841 5559138 -221965440 - AluYb8 SINE Alu -3 315 19 1971 139 85 20 chr3 5559249 5559601 -221964977 - THE1C LTR MaLR 0 375 1 443 275 126 33 chr3 5560490 5560672 -221963906 + MIR SINE MIR 58 256 -6 369 319 35 0 chr3 5560809 5560922 -221963656 + L2 LINE L2 3155 3271 -1 8225 22 0 0 chr3 5561127 5562592 -221961986 - L1PA2 LINE L1 0 6155 4691 14488 37 1 3 chr3 5562592 5564337 -221960241 + L1PA2 LINE L1 2961 4702 -1444 627 242 56 25 chr3 5564341 5564502 -221960076 - MIR SINE MIR -73 189 24 189 0 0 0 chr3 5564519 5564540 -221960038 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 773 233 41 116 chr3 5565437 5565781 -221958797 + MER102b DNA MER1_type 2 319 -22 219 293 89 57 chr3 5565781 5565904 -221958674 - MIR3 SINE MIR -54 154 28 345 317 0 0 chr3 5566042 5566124 -221958454 - L2 LINE L2 0 3313 3232 322 293 95 0 chr3 5566262 5566378 -221958200 - MIR SINE MIR -71 191 65 323 263 61 44 chr3 5566508 5566622 -221957956 + MIR3 SINE MIR 47 162 -46 4526 28 4 0 chr3 5567641 5568143 -221956435 - L1PA4 LINE L1 -1 6154 5651 246 289 33 22 chr3 5568946 5569036 -221955542 - MER94 DNA DNA 0 134 44 1272 169 132 33 chr3 5569090 5569362 -221955216 - AluJb SINE Alu -13 299 1 22 0 0 0 chr3 5569809 5569831 -221954747 + AT_rich Low_complexity Low_complexity 1 22 0 3633 201 49 27 chr3 5570054 5570556 -221954022 + L1MB7 LINE L1 5227 5760 -424 1678 141 11 67 chr3 5570556 5570691 -221953887 + AluJb SINE Alu 11 123 -189 2312 91 7 0 chr3 5570691 5570987 -221953591 + AluY SINE Alu 1 298 -13 1678 141 11 67 chr3 5570987 5571135 -221953443 + AluJb SINE Alu 123 278 -34 3633 201 49 27 chr3 5571135 5571532 -221953046 + L1MB7 LINE L1 5760 6147 -37 1227 126 0 6 chr3 5571537 5571704 -221952874 + AluSg/x SINE Alu 131 296 -16 283 87 22 0 chr3 5571706 5571752 -221952826 + L1MB8 LINE L1 6132 6178 0 425 289 0 18 chr3 5571962 5572076 -221952502 + MIR SINE MIR 36 147 -61 1861 168 3 0 chr3 5572440 5572731 -221951847 + AluJb SINE Alu 1 292 -20 2126 135 0 0 chr3 5572741 5573037 -221951541 + AluSg SINE Alu 1 296 -14 671 183 56 7 chr3 5573795 5573937 -221950641 + MER20 DNA MER1_type 6 154 -65 * 1277 215 93 31 chr3 5573930 5574284 -221950294 - LTR52 LTR ERVL -42 379 4 441 195 12 0 chr3 5574286 5574368 -221950210 + MER20 DNA MER1_type 137 219 0 1030 258 28 60 chr3 5574505 5574858 -221949720 + LTR16A LTR ERVL 103 444 -6 432 204 60 156 chr3 5574860 5575129 -221949449 + MER112 DNA MER1_type 18 260 0 387 292 71 60 chr3 5575759 5575927 -221948651 - MIR3 SINE MIR -22 186 17 256 336 68 20 chr3 5576833 5576979 -221947599 + MIR3 SINE MIR 34 186 -22 390 265 121 8 chr3 5577256 5577388 -221947190 + MIR SINE MIR 104 250 -12 183 42 0 0 chr3 5577403 5577427 -221947151 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 5045 139 49 14 chr3 5577524 5578397 -221946181 - MER4D LTR ERV1 -2 869 1 2587 110 11 8 chr3 5578411 5578765 -221945813 + THE1A LTR MaLR 1 355 0 226 351 85 0 chr3 5579296 5579390 -221945188 - L2 LINE L2 -2 3270 3169 213 239 0 22 chr3 5579460 5579506 -221945072 - L2 LINE L2 -18 3254 3210 682 279 181 85 chr3 5579525 5580489 -221944089 - L3 LINE CR1 -90 1487 431 216 0 0 0 chr3 5582333 5582357 -221942221 + (TA)n Simple_repeat Simple_repeat 2 25 0 192 97 0 0 chr3 5584568 5584599 -221939979 + (CA)n Simple_repeat Simple_repeat 1 31 0 431 143 0 39 chr3 5584772 5584849 -221939729 + AluY SINE Alu 208 281 -30 452 308 104 11 chr3 5585749 5586009 -221938569 - L2 LINE L2 0 3313 3030 269 238 179 12 chr3 5586635 5586719 -221937859 - MER5A DNA MER1_type -83 106 9 550 250 57 6 chr3 5586735 5586910 -221937668 - Charlie2 DNA MER1_type 0 2862 2679 1208 205 8 63 chr3 5586910 5587290 -221937288 - THE1C LTR MaLR 0 375 17 1043 141 29 0 chr3 5587459 5587629 -221936949 - MLT1C LTR MaLR -285 182 8 1692 76 5 0 chr3 5587689 5587899 -221936679 + AluY SINE Alu 86 296 -15 12183 120 19 44 chr3 5587923 5588067 -221936511 + Tigger1 DNA MER2_type 1 147 -2271 1194 107 60 0 chr3 5588067 5588235 -221936343 - L1PB3 LINE L1 -1 6153 5976 12183 120 19 44 chr3 5588235 5588829 -221935749 + Tigger1 DNA MER2_type 147 755 -1663 2076 123 23 13 chr3 5588829 5589101 -221935477 + AluSq SINE Alu 1 278 -35 1113 71 24 0 chr3 5589101 5589269 -221935309 + (GAAA)n Simple_repeat Simple_repeat 2 173 0 2076 123 23 13 chr3 5589269 5589306 -221935272 + AluSq SINE Alu 278 313 0 12183 120 19 44 chr3 5589306 5590551 -221934027 + Tigger1 DNA MER2_type 755 1934 -484 2387 150 20 93 chr3 5590551 5591044 -221933534 - LTR32 LTR ERVL 0 471 15 3196 140 10 6 chr3 5591044 5591530 -221933048 + Tigger1 DNA MER2_type 1930 2417 -1 435 274 42 53 chr3 5591630 5591820 -221932758 - MIR SINE MIR -36 226 39 299 452 25 0 chr3 5592013 5592170 -221932408 - L2 LINE L2 -12 3260 3100 * 616 292 31 5 chr3 5592168 5592360 -221932218 - MIR SINE MIR -1 261 65 343 304 9 9 chr3 5592563 5592678 -221931900 + MIR SINE MIR 137 251 -11 240 289 22 44 chr3 5592974 5593064 -221931514 + L3 LINE CR1 1488 1575 -2 466 305 72 6 chr3 5594346 5594513 -221930065 + MIR SINE MIR 37 214 -48 859 73 47 80 chr3 5595113 5595128 -221929450 + L1MA5A LINE L1 6153 6167 -130 1996 148 40 35 chr3 5595128 5595501 -221929077 + THE1C LTR MaLR 1 375 0 859 73 47 80 chr3 5595501 5595609 -221928969 + L1MA5A LINE L1 6167 6273 -24 495 105 53 0 chr3 5595609 5595635 -221928943 + MADE1 DNA Mariner 1 24 -56 2284 88 19 10 chr3 5595635 5595943 -221928635 - AluY SINE Alu 0 311 1 495 105 53 0 chr3 5595943 5595992 -221928586 + MADE1 DNA Mariner 24 80 0 859 73 47 80 chr3 5595992 5596017 -221928561 + L1MA5A LINE L1 6273 6297 0 1264 195 20 28 chr3 5596731 5597062 -221927516 - MLT2B3 LTR ERVL 0 554 231 1539 155 39 0 chr3 5597074 5597332 -221927246 - MLT2A2 LTR ERVL -185 268 1 832 287 108 25 chr3 5597426 5597740 -221926838 + MER102b DNA MER1_type 2 341 0 205 288 82 0 chr3 5597842 5597915 -221926663 + L2 LINE L2 3235 3313 0 239 281 67 11 chr3 5597923 5598012 -221926566 - L3 LINE CR1 -522 1055 962 409 309 65 12 chr3 5599240 5599431 -221925147 - MIR SINE MIR -43 219 18 321 272 25 0 chr3 5599542 5599623 -221924955 - MER81 DNA DNA -5 109 27 280 184 0 20 chr3 5599646 5599695 -221924883 - MER81 DNA DNA -66 48 1 2554 124 5 22 chr3 5599874 5600244 -221924334 + THE1B LTR MaLR 1 364 0 335 320 49 0 chr3 5600502 5600624 -221923954 - MIR SINE MIR -32 230 103 405 263 75 0 chr3 5601551 5601684 -221922894 + LTR67 LTR ERVL 403 545 -12 1748 182 0 10 chr3 5601737 5602045 -221922533 - AluSx SINE Alu -7 305 1 181 263 288 12 chr3 5602131 5602211 -221922367 - MIR SINE MIR -63 145 44 2365 76 0 22 chr3 5602302 5602619 -221921959 + AluY SINE Alu 1 310 -1 321 318 77 43 chr3 5602955 5603188 -221921390 + MIR SINE MIR 5 245 -17 468 193 0 0 chr3 5603750 5603859 -221920719 + (TA)n Simple_repeat Simple_repeat 2 110 0 314 192 0 26 chr3 5603936 5604014 -221920564 + (CATA)n Simple_repeat Simple_repeat 2 77 0 261 276 35 0 chr3 5604014 5604101 -221920477 + L1MC4 LINE L1 6614 6703 -1339 231 272 0 22 chr3 5604093 5604185 -221920393 - L1MC4 LINE L1 -1339 6703 6614 * 357 208 0 0 chr3 5604186 5604263 -221920315 + (TA)n Simple_repeat Simple_repeat 1 77 0 316 283 0 22 chr3 5604263 5604355 -221920223 - L1MC4 LINE L1 -1339 6703 6614 239 267 47 0 chr3 5604365 5604451 -221920127 - L1MC4 LINE L1 -1339 6703 6614 435 211 0 0 chr3 5604452 5604547 -221920031 + (TA)n Simple_repeat Simple_repeat 2 96 0 229 261 0 22 chr3 5604547 5604639 -221919939 - L1MC4 LINE L1 -1339 6703 6614 252 214 0 0 chr3 5604640 5604696 -221919882 + (TA)n Simple_repeat Simple_repeat 1 56 0 1883 128 25 4 chr3 5605182 5605456 -221919122 - AluSc SINE Alu -29 280 1 6868 201 60 9 chr3 5606061 5608078 -221916500 + L1MB2 LINE L1 3678 5785 -386 2003 127 43 0 chr3 5608071 5608394 -221916184 - L1P LINE L1 -989 5157 4821 * 2844 67 6 11 chr3 5608394 5608751 -221915827 + L1PA10 LINE L1 5808 6164 -4 198 71 0 0 chr3 5609888 5609916 -221914662 + (CA)n Simple_repeat Simple_repeat 2 29 0 2122 132 90 3 chr3 5609917 5610282 -221914296 + L1MB2 LINE L1 5773 6169 -2 387 209 9 67 chr3 5610921 5610997 -221913581 + MIR SINE MIR 30 100 -162 2036 165 45 8 chr3 5610997 5611349 -221913229 + MER47A DNA MER2_type 2 366 0 387 209 9 67 chr3 5611349 5611377 -221913201 + MIR SINE MIR 100 128 -134 2901 94 20 5 chr3 5611472 5611864 -221912714 + MLT2A1 LTR ERVL 1 398 -46 26 64 0 0 chr3 5611864 5611911 -221912667 + AT_rich Low_complexity Low_complexity 1 47 0 232 154 0 19 chr3 5611911 5611963 -221912615 + LTR66 LTR ERVL 404 454 -156 * 249 62 167 21 chr3 5611933 5611981 -221912597 + MLT2A1 LTR ERVL 399 453 0 44384 65 17 11 chr3 5611981 5614622 -221909956 + HERVL-A1-A1 LTR ERVL 1 2623 -3031 2982 6 0 0 chr3 5614622 5614940 -221909638 - AluYb8 SINE Alu 0 318 1 44384 65 17 11 chr3 5614940 5617914 -221906664 + HERVL-A1-A1 LTR ERVL 2623 5654 0 2656 85 66 33 chr3 5617914 5618309 -221906269 + MLT2A1 LTR ERVL 1 412 -32 248 0 31 0 chr3 5618309 5618341 -221906237 + (TA)n Simple_repeat Simple_repeat 1 33 0 2656 85 66 33 chr3 5618341 5618368 -221906210 + MLT2A1 LTR ERVL 412 437 -7 243 214 71 0 chr3 5618832 5618888 -221905690 - MER101 LTR ERV1 -146 328 269 828 234 100 13 chr3 5619159 5619398 -221905180 + MIR SINE MIR 3 262 0 181 378 41 10 chr3 5619995 5620093 -221904485 + MIR3 SINE MIR 11 111 -97 225 170 64 0 chr3 5620225 5620272 -221904306 + CT-rich Low_complexity Low_complexity 4 53 0 258 198 143 66 chr3 5620428 5620519 -221904059 - Charlie8 DNA MER1_type -2319 98 1 208 191 117 117 chr3 5621519 5621613 -221902965 - MIR3 SINE MIR -15 193 100 585 249 127 5 chr3 5622706 5622911 -221901667 + MIR SINE MIR 20 249 -13 540 239 57 19 chr3 5623079 5623238 -221901340 - MIR SINE MIR -84 178 14 588 311 31 40 chr3 5624211 5624433 -221900145 - MIR SINE MIR -15 247 28 243 294 9 64 chr3 5624506 5624615 -221899963 + L2 LINE L2 3193 3295 -18 579 271 94 10 chr3 5625103 5625295 -221899283 + MER3 DNA MER1_type 2 209 0 317 262 82 47 chr3 5625306 5625463 -221899115 - MER5A DNA MER1_type -10 179 7 190 359 47 0 chr3 5625657 5625721 -221898857 + L2 LINE L2 3186 3252 -20 215 286 16 0 chr3 5626133 5626196 -221898382 + L2 LINE L2 3209 3272 0 189 0 0 0 chr3 5626400 5626421 -221898157 + (CAA)n Simple_repeat Simple_repeat 1 21 0 229 356 59 0 chr3 5626531 5626632 -221897946 + MIR SINE MIR 107 213 -49 2142 148 22 63 chr3 5626709 5627155 -221897423 + MLT1C LTR MaLR 36 463 -4 1754 166 28 7 chr3 5627187 5627476 -221897102 + AluJo SINE Alu 1 295 -17 24 0 0 0 chr3 5628757 5628781 -221895797 + AT_rich Low_complexity Low_complexity 1 24 0 658 191 0 48 chr3 5629399 5629500 -221895078 + MLT2B2 LTR ERVL 376 469 -46 180 0 0 0 chr3 5629500 5629520 -221895058 + (CAAT)n Simple_repeat Simple_repeat 3 22 0 658 191 0 48 chr3 5629520 5629565 -221895013 + MLT2B2 LTR ERVL 469 515 0 355 200 45 3 chr3 5631144 5631262 -221893316 - MER63A DNA MER1_type -37 173 14 373 280 0 51 chr3 5631446 5631529 -221893049 - LTR33 LTR ERVL -7 514 441 1115 208 76 90 chr3 5631529 5631961 -221892617 - MSTC LTR MaLR -2 426 1 373 280 0 51 chr3 5631961 5632034 -221892544 - LTR33 LTR ERVL -80 441 366 527 203 23 30 chr3 5632036 5632169 -221892409 - LTR33 LTR ERVL -389 132 1 258 371 44 46 chr3 5632181 5632569 -221892009 - L2 LINE L2 -558 2756 2370 350 233 56 0 chr3 5632599 5632689 -221891889 + LTR33 LTR ERVL 163 257 -264 258 301 102 18 chr3 5632782 5632948 -221891630 - L2 LINE L2 -1003 2311 2132 189 0 0 0 chr3 5633640 5633661 -221890917 + (T)n Simple_repeat Simple_repeat 1 21 0 548 310 144 53 chr3 5633968 5634384 -221890194 + L2 LINE L2 2857 3310 -3 431 305 147 10 chr3 5634387 5634584 -221889994 - MIR SINE MIR -19 243 20 236 333 66 105 chr3 5634999 5635227 -221889351 - L2 LINE L2 -6 3266 3048 308 242 121 0 chr3 5635254 5635345 -221889233 + MIR SINE MIR 73 174 -88 962 204 0 17 chr3 5635738 5635914 -221888664 - AluJb SINE Alu -3 309 137 204 300 0 0 chr3 5636078 5636128 -221888450 - MIR SINE MIR -14 248 199 417 277 97 35 chr3 5636616 5636808 -221887770 - MIR SINE MIR -12 250 57 2099 122 0 3 chr3 5637031 5637327 -221887251 + AluSx SINE Alu 1 295 -17 198 0 0 0 chr3 5638010 5638032 -221886546 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 533 296 69 0 chr3 5638057 5638216 -221886362 + MIR SINE MIR 76 245 -17 749 177 62 77 chr3 5640273 5640482 -221884096 - MER20 DNA MER1_type -13 206 1 255 255 0 0 chr3 5640617 5640668 -221883910 + L2 LINE L2 3263 3313 0 210 338 0 26 chr3 5642207 5642284 -221882294 - MIR SINE MIR -55 153 79 22 35 0 0 chr3 5642959 5642988 -221881590 + AT_rich Low_complexity Low_complexity 1 29 0 204 308 12 47 chr3 5646061 5646230 -221878348 + C-rich Low_complexity Low_complexity 5 167 0 231 88 0 0 chr3 5646641 5646675 -221877903 + (GGA)n Simple_repeat Simple_repeat 3 36 0 21 57 0 0 chr3 5647156 5647191 -221877387 + GC_rich Low_complexity Low_complexity 1 35 0 791 243 56 42 chr3 5648701 5648915 -221875663 + MIR SINE MIR 28 244 -18 207 0 0 0 chr3 5650265 5650288 -221874290 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 447 283 9 9 chr3 5650386 5650492 -221874086 - MER81 DNA DNA 0 114 9 2755 105 11 3 chr3 5650653 5651014 -221873564 - THE1B LTR MaLR 0 364 1 271 236 0 18 chr3 5651015 5651070 -221873508 - MIR3 SINE MIR -46 162 109 358 192 0 14 chr3 5651237 5651310 -221873268 - L1ME4a LINE L1 -249 5872 5801 22 0 0 0 chr3 5651497 5651519 -221873059 + AT_rich Low_complexity Low_complexity 1 22 0 329 327 62 0 chr3 5651698 5651811 -221872767 + MIR SINE MIR 1 120 -142 425 152 0 0 chr3 5651859 5651925 -221872653 + L1PA16 LINE L1 6095 6160 -6 4403 152 19 32 chr3 5651934 5652083 -221872495 + L1MB3 LINE L1 5386 5536 -647 2625 112 67 45 chr3 5652083 5652502 -221872076 + MSTA LTR MaLR 1 428 0 4403 152 19 32 chr3 5652502 5652772 -221871806 + L1MB3 LINE L1 5536 5808 -375 2506 111 36 30 chr3 5652772 5653134 -221871444 - THE1B LTR MaLR 0 364 1 4403 152 19 32 chr3 5653134 5653522 -221871056 + L1MB3 LINE L1 5808 6183 0 669 245 164 45 chr3 5653568 5653927 -221870651 - MLT1J1 LTR MaLR 0 446 45 377 323 0 0 chr3 5654952 5655045 -221869533 - MIR3 SINE MIR -7 201 109 291 274 16 0 chr3 5655099 5655161 -221869417 - MIR SINE MIR -108 100 38 1565 158 36 37 chr3 5655243 5655719 -221868859 + L1M2 LINE L1 5088 5562 -729 226 180 0 20 chr3 5655764 5655814 -221868764 + L1MCa LINE L1 2016 2064 -4362 * 278 261 23 0 chr3 5655801 5655889 -221868689 + L1MC4 LINE L1 6614 6703 -1339 2604 165 34 25 chr3 5656039 5656652 -221867926 - pTR5 LTR ERV1 -1075 1363 745 230 152 0 0 chr3 5656655 5656688 -221867890 - Alu SINE Alu -265 34 2 635 261 159 8 chr3 5656722 5656979 -221867599 - L1ME3A LINE L1 -191 5979 5684 1242 124 10 38 chr3 5657242 5657451 -221867127 + AluSg/x SINE Alu 105 307 -5 261 57 0 0 chr3 5659239 5659274 -221865304 + (CA)n Simple_repeat Simple_repeat 2 36 0 480 354 28 6 chr3 5660357 5660538 -221864040 + MIR SINE MIR 3 187 -75 2528 153 88 7 chr3 5662101 5662533 -221862045 - MLT1C LTR MaLR 0 467 1 1375 233 102 32 chr3 5663266 5663738 -221860840 - MLT1D LTR MaLR 0 505 1 1626 154 42 19 chr3 5664352 5664664 -221859914 + L1MB3 LINE L1 5863 6181 -2 299 229 60 78 chr3 5664890 5665056 -221859522 + LTR16A1 LTR ERVL 245 407 -50 2052 149 10 0 chr3 5665416 5665725 -221858853 + AluSx SINE Alu 1 312 0 951 208 137 35 chr3 5666003 5666316 -221858262 - LTR37A LTR ERV1 -4 422 78 890 201 0 18 chr3 5666317 5666481 -221858097 + FRAM SINE Alu 3 163 -3 1484 190 4 11 chr3 5666545 5666819 -221857759 + AluJo SINE Alu 40 311 -1 454 234 128 0 chr3 5666940 5667081 -221857497 + MER103 DNA DNA 8 166 0 518 350 16 40 chr3 5667696 5667946 -221856632 + MIR SINE MIR 9 250 -12 484 192 46 15 chr3 5668106 5668236 -221856342 - MER113 DNA MER1_type? -386 135 2 319 286 216 12 chr3 5668240 5668394 -221856184 + L3 LINE CR1 1288 1409 -168 2920 181 11 29 chr3 5668394 5668914 -221855664 + MLT2B2 LTR ERVL 1 511 -4 319 286 216 12 chr3 5668914 5669000 -221855578 + L3 LINE CR1 1409 1577 0 375 60 0 0 chr3 5669496 5669546 -221855032 + (CA)n Simple_repeat Simple_repeat 2 51 0 380 248 90 35 chr3 5669900 5670045 -221854533 - MIR SINE MIR -36 226 74 331 260 72 27 chr3 5670089 5670240 -221854338 - MIR3 SINE MIR -30 178 28 189 225 0 0 chr3 5670412 5670452 -221854126 - MIR SINE MIR -13 249 210 288 360 0 0 chr3 5670553 5670653 -221853925 - MIR SINE MIR -76 132 33 311 255 39 98 chr3 5670813 5670966 -221853612 + L1M2a LINE L1 610 753 -6415 245 270 27 14 chr3 5671531 5671605 -221852973 + MIR SINE MIR 81 155 -107 414 325 36 60 chr3 5671669 5671761 -221852817 + L2 LINE L2 3111 3199 -73 740 236 83 126 chr3 5671761 5672269 -221852309 - LTR16C LTR ERVL -3 488 3 414 325 36 60 chr3 5672269 5672342 -221852236 + L2 LINE L2 3199 3272 0 280 233 50 0 chr3 5672552 5672612 -221851966 + L2 LINE L2 3198 3260 -12 368 218 65 73 chr3 5672953 5673259 -221851319 + MLT1H LTR MaLR 206 549 0 21 36 0 0 chr3 5675041 5675069 -221849509 + AT_rich Low_complexity Low_complexity 1 28 0 516 266 50 50 chr3 5675125 5675186 -221849392 + MIR SINE MIR 41 101 -161 1636 210 83 38 chr3 5675186 5675629 -221848949 - MLT1C LTR MaLR 0 467 5 516 266 50 50 chr3 5675629 5675789 -221848789 + MIR SINE MIR 100 262 0 399 313 22 15 chr3 5676220 5676354 -221848224 + MIR SINE MIR 20 154 -108 2662 154 0 5 chr3 5676387 5676809 -221847769 + L1MB3 LINE L1 5757 6176 -7 25 0 0 0 chr3 5676809 5676834 -221847744 + AT_rich Low_complexity Low_complexity 1 25 0 484 299 41 7 chr3 5677062 5677209 -221847369 + MIR3 SINE MIR 14 165 -43 677 112 45 15 chr3 5677474 5677608 -221846970 + L1MB2 LINE L1 6034 6171 0 2097 145 0 0 chr3 5677908 5678218 -221846360 + AluJb SINE Alu 1 310 -2 500 346 121 32 chr3 5678510 5678857 -221845721 - L2 LINE L2 0 3272 2895 2346 100 0 3 chr3 5679129 5679439 -221845139 + AluSx SINE Alu 1 309 -3 2622 148 54 6 chr3 5680729 5681249 -221843329 - L1MC1 LINE L1 -18 6315 5727 283 346 60 39 chr3 5681325 5681507 -221843071 - L3 LINE CR1 -32 1545 1360 2143 87 52 16 chr3 5681595 5681801 -221842777 - L1PA12 LINE L1 -2 6166 5944 3201 119 2 5 chr3 5681801 5682236 -221842342 - MER57B LTR ERV1 0 434 1 2143 87 52 16 chr3 5682236 5682339 -221842239 - L1PA12 LINE L1 -224 5944 5846 375 331 192 23 chr3 5682504 5682894 -221841684 - L3 LINE CR1 -346 1231 776 546 300 95 71 chr3 5682985 5683481 -221841097 - L2 LINE L2 -1 3312 2805 24 32 0 0 chr3 5683873 5683904 -221840674 + AT_rich Low_complexity Low_complexity 1 31 0 213 250 77 0 chr3 5684194 5684246 -221840332 - L2 LINE L2 0 3272 3217 1069 211 5 0 chr3 5684252 5684446 -221840132 + MER63A DNA MER1_type 5 199 -11 410 324 53 79 chr3 5684461 5685051 -221839527 - L2 LINE L2 -51 3221 2661 570 90 13 0 chr3 5685180 5685258 -221839320 - MADE1 DNA Mariner -1 79 1 798 207 19 58 chr3 5685519 5685727 -221838851 + MER3 DNA MER1_type 1 200 -9 229 322 0 0 chr3 5686537 5686596 -221837982 - L2 LINE L2 -2 3311 3253 2144 117 0 0 chr3 5687255 5687545 -221837033 - AluSc SINE Alu -12 297 8 310 324 94 18 chr3 5687765 5687935 -221836643 - MIR SINE MIR -65 197 15 190 250 54 0 chr3 5688666 5688722 -221835856 - MIR SINE MIR -79 183 125 334 308 0 34 chr3 5690472 5690589 -221833989 - MIR3 SINE MIR -90 118 6 950 272 66 11 chr3 5690700 5690987 -221833591 + MER102b DNA MER1_type 21 323 -18 2337 179 10 0 chr3 5691166 5691563 -221833015 - MER57A LTR ERV1 0 403 3 424 91 0 26 chr3 5691756 5691833 -221832745 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 192 263 225 0 chr3 5691887 5691967 -221832611 - L2 LINE L2 -1 3312 3215 531 289 65 47 chr3 5692217 5692449 -221832129 - MIR SINE MIR -10 252 17 303 28 0 0 chr3 5692522 5692558 -221832020 + (CA)n Simple_repeat Simple_repeat 2 37 0 1154 86 0 0 chr3 5693061 5693213 -221831365 + AluY SINE Alu 160 311 0 471 304 104 11 chr3 5694087 5694347 -221830231 - L2 LINE L2 0 3313 3030 548 291 57 40 chr3 5694595 5694822 -221829756 + MIR SINE MIR 20 250 -12 22 0 0 0 chr3 5695234 5695256 -221829322 + AT_rich Low_complexity Low_complexity 1 22 0 252 266 0 0 chr3 5696210 5696274 -221828304 - MER117 DNA MER1_type -119 78 15 397 302 78 0 chr3 5698317 5698514 -221826064 - MIR SINE MIR 0 262 50 193 294 206 10 chr3 5698955 5699057 -221825521 - MIR SINE MIR -138 124 3 366 367 6 28 chr3 5699393 5699573 -221825005 - MIR3 SINE MIR -10 198 23 275 360 74 46 chr3 5699807 5699982 -221824596 + L3 LINE CR1 214 393 -1184 815 346 99 9 chr3 5700221 5700470 -221824108 + L3 LINE CR1 400 625 -952 210 37 0 0 chr3 5700470 5700497 -221824081 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 815 346 99 9 chr3 5700497 5700701 -221823877 + L3 LINE CR1 625 894 -683 1053 179 10 0 chr3 5701056 5701251 -221823327 - MER58 DNA MER1_type -2187 233 37 198 0 0 0 chr3 5701283 5701305 -221823273 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 331 44 0 0 chr3 5701735 5701800 -221822778 + AluY SINE Alu 237 301 0 1666 210 57 7 chr3 5702671 5703109 -221821469 - MLT1C LTR MaLR 0 467 8 1716 71 5 0 chr3 5703169 5703379 -221821199 + AluY SINE Alu 86 296 -15 11364 119 19 38 chr3 5703403 5703546 -221821032 + Tigger1 DNA MER2_type 1 145 -2273 1090 113 60 0 chr3 5703546 5703714 -221820864 - L1PB3 LINE L1 -1 6153 5976 11364 119 19 38 chr3 5703714 5704308 -221820270 + Tigger1 DNA MER2_type 145 749 -1669 2136 115 30 7 chr3 5704308 5704579 -221819999 + AluSq SINE Alu 1 281 -32 960 122 23 0 chr3 5704579 5704751 -221819827 + GA-rich Low_complexity Low_complexity 3 178 0 2136 115 30 7 chr3 5704751 5704783 -221819795 + AluSq SINE Alu 281 311 -2 11364 119 19 38 chr3 5704783 5706016 -221818562 + Tigger1 DNA MER2_type 749 1934 -484 2186 152 20 93 chr3 5706016 5706509 -221818069 - LTR32 LTR ERVL 0 471 15 2955 140 10 6 chr3 5706509 5706995 -221817583 + Tigger1 DNA MER2_type 1930 2417 -1 434 274 42 53 chr3 5707095 5707285 -221817293 - MIR SINE MIR -36 226 39 315 452 25 0 chr3 5707478 5707635 -221816943 - L2 LINE L2 -12 3260 3100 * 621 292 31 5 chr3 5707633 5707825 -221816753 - MIR SINE MIR -1 261 65 354 304 9 9 chr3 5708028 5708143 -221816435 + MIR SINE MIR 137 251 -11 245 289 22 44 chr3 5708439 5708529 -221816049 + L3 LINE CR1 1488 1575 -2 475 305 72 6 chr3 5709810 5709977 -221814601 + MIR SINE MIR 37 214 -48 783 73 47 80 chr3 5710577 5710592 -221813986 + L1MA5A LINE L1 6153 6167 -130 1827 153 40 35 chr3 5710592 5710965 -221813613 + THE1C LTR MaLR 1 375 0 783 73 47 80 chr3 5710965 5711073 -221813505 + L1MA5A LINE L1 6167 6273 -24 455 105 53 0 chr3 5711073 5711099 -221813479 + MADE1 DNA Mariner 1 24 -56 2312 84 19 10 chr3 5711099 5711407 -221813171 - AluY SINE Alu 0 311 1 455 105 53 0 chr3 5711407 5711456 -221813122 + MADE1 DNA Mariner 24 80 0 783 73 47 80 chr3 5711456 5711481 -221813097 + L1MA5A LINE L1 6273 6297 0 1161 195 20 28 chr3 5712195 5712526 -221812052 - MLT2B3 LTR ERVL 0 554 231 1401 159 39 0 chr3 5712538 5712796 -221811782 - MLT2A2 LTR ERVL -185 268 1 698 296 102 19 chr3 5712890 5713204 -221811374 + MER102b DNA MER1_type 2 341 0 210 288 82 0 chr3 5713306 5713379 -221811199 + L2 LINE L2 3235 3313 0 238 281 67 11 chr3 5713387 5713476 -221811102 - L3 LINE CR1 -522 1055 962 409 309 65 12 chr3 5714704 5714895 -221809683 - MIR SINE MIR -43 219 18 304 272 25 0 chr3 5715005 5715086 -221809492 - MER81 DNA DNA -5 109 27 260 184 0 20 chr3 5715109 5715158 -221809420 - MER81 DNA DNA -66 48 1 2377 124 5 22 chr3 5715337 5715707 -221808871 + THE1B LTR MaLR 1 364 0 294 320 56 8 chr3 5715961 5716086 -221808492 - MIR SINE MIR -29 233 103 355 271 75 0 chr3 5717014 5717147 -221807431 + LTR67 LTR ERVL 403 545 -12 2246 103 3 10 chr3 5717193 5717505 -221807073 - AluSg SINE Alu 0 310 1 1632 167 39 33 chr3 5717591 5717927 -221806651 - MER7A DNA MER2_type -9 337 2 21 0 0 0 chr3 5718083 5718104 -221806474 + AT_rich Low_complexity Low_complexity 1 21 0 205 353 35 12 chr3 5718276 5718361 -221806217 - MIR SINE MIR 0 262 176 496 286 31 26 chr3 5718749 5718941 -221805637 - MIR SINE MIR 0 262 70 1131 179 37 34 chr3 5719155 5719423 -221805155 - L1MB8 LINE L1 -75 6103 5835 186 191 0 0 chr3 5719712 5719754 -221804824 + (TG)n Simple_repeat Simple_repeat 2 43 0 217 89 44 0 chr3 5722697 5722742 -221801836 + (TTA)n Simple_repeat Simple_repeat 2 48 0 186 133 0 0 chr3 5723055 5723085 -221801493 + (T)n Simple_repeat Simple_repeat 1 30 0 286 339 106 21 chr3 5727022 5727211 -221797367 - MIR SINE MIR -21 241 37 419 234 81 16 chr3 5727526 5727650 -221796928 - MIR SINE MIR -18 244 113 584 292 80 56 chr3 5728393 5728732 -221795846 - L1ME4a LINE L1 0 6121 5775 252 268 0 0 chr3 5731767 5731823 -221792755 + L2 LINE L2 3176 3231 -41 2203 137 44 34 chr3 5732025 5732248 -221792330 - MLT1B LTR MaLR 0 390 160 2427 93 3 0 chr3 5732248 5732558 -221792020 - AluSq SINE Alu -2 311 1 2203 137 44 34 chr3 5732558 5732720 -221791858 - MLT1B LTR MaLR -230 160 1 514 343 0 0 chr3 5732881 5733024 -221791554 - MIR3 SINE MIR -23 185 43 213 321 0 0 chr3 5733736 5733792 -221790786 - L2 LINE L2 -5 3308 3253 843 233 110 8 chr3 5734199 5734435 -221790143 - MIR SINE MIR 0 262 3 242 289 47 39 chr3 5734436 5734564 -221790014 - L2 LINE L2 -494 2820 2692 1793 166 7 7 chr3 5735137 5735433 -221789145 + AluJo SINE Alu 5 300 -12 415 279 144 19 chr3 5735742 5735950 -221788628 - L2 LINE L2 -12 3301 3068 324 278 107 47 chr3 5736721 5736890 -221787688 - MIR3 SINE MIR -7 201 23 4720 184 57 16 chr3 5737086 5738172 -221786406 - L1MC4 LINE L1 -5 8037 6907 1000 288 88 22 chr3 5738223 5738467 -221786111 - LTR16C LTR ERVL -22 469 192 2182 165 93 27 chr3 5738467 5738941 -221785637 + MLT1D LTR MaLR 1 505 0 1000 288 88 22 chr3 5738941 5739061 -221785517 - LTR16C LTR ERVL -299 192 81 2690 80 11 16 chr3 5740003 5740379 -221784199 - THE1C LTR MaLR 0 375 2 180 324 25 88 chr3 5740444 5740728 -221783850 + L2 LINE L2 2711 2976 -338 244 295 16 0 chr3 5740890 5740951 -221783627 + L2 LINE L2 3206 3267 -5 448 303 68 19 chr3 5741034 5741120 -221783458 + MIR3 SINE MIR 33 113 -95 20476 58 1 18 chr3 5741120 5744577 -221780001 + L1PA5 LINE L1 2698 6145 -9 448 303 68 19 chr3 5744577 5744652 -221779926 + MIR3 SINE MIR 113 202 -6 562 266 128 21 chr3 5745195 5745383 -221779195 + MIR SINE MIR 18 225 -37 240 381 49 69 chr3 5745397 5745846 -221778732 - L2 LINE L2 -8 3264 2825 189 133 0 0 chr3 5745876 5745906 -221778672 - L2 LINE L2 -4 3309 3280 234 293 73 0 chr3 5745913 5745995 -221778583 - MIR SINE MIR -95 167 80 3042 144 26 0 chr3 5746015 5746515 -221778063 - L1PA16 LINE L1 -2 6164 5652 1339 107 9 0 chr3 5746515 5746731 -221777847 + L1P4 LINE L1 5377 5594 -572 293 328 49 16 chr3 5747059 5747181 -221777397 - MIR SINE MIR -105 157 32 6410 256 85 48 chr3 5747402 5749821 -221774757 + L2 LINE L2 450 2958 -356 858 176 4 106 chr3 5749822 5750049 -221774529 + MER3 DNA MER1_type 6 209 0 979 262 19 52 chr3 5750058 5750382 -221774196 + L2 LINE L2 2966 3278 -35 262 274 16 0 chr3 5750575 5750637 -221773941 + L2 LINE L2 3136 3198 -74 979 157 0 0 chr3 5752404 5752557 -221772021 + FRAM SINE Alu 21 173 -3 377 224 115 51 chr3 5753100 5753256 -221771322 + MIR3 SINE MIR 40 205 -3 762 289 62 55 chr3 5753751 5754204 -221770374 - MLT1K LTR MaLR -64 524 69 834 286 44 8 chr3 5754378 5754630 -221769948 + MIR SINE MIR 2 262 0 289 341 12 0 chr3 5754633 5754718 -221769860 - MIR SINE MIR -93 115 30 630 297 39 0 chr3 5755884 5756066 -221768512 - MIR SINE MIR -48 214 26 2645 171 92 14 chr3 5756129 5756639 -221767939 - MER44D DNA MER2_type 0 605 1 270 383 87 0 chr3 5756713 5756896 -221767682 - MIR SINE MIR 0 262 64 1197 252 20 17 chr3 5756906 5757208 -221767370 + LTR16C LTR ERVL 189 491 0 22 0 0 0 chr3 5758078 5758100 -221766478 + AT_rich Low_complexity Low_complexity 1 22 0 2186 107 3 7 chr3 5758189 5758479 -221766099 + AluSc SINE Alu 1 289 -20 189 0 0 0 chr3 5758881 5758902 -221765676 + (T)n Simple_repeat Simple_repeat 1 21 0 543 285 21 57 chr3 5760026 5760061 -221764517 + MIR3 SINE MIR 19 54 -154 1221 186 91 96 chr3 5760061 5760459 -221764119 + MSTD LTR MaLR 1 396 0 543 285 21 57 chr3 5760459 5760616 -221763962 + MIR3 SINE MIR 54 204 -4 43 47 0 0 chr3 5760631 5760695 -221763883 + AT_rich Low_complexity Low_complexity 1 64 0 29384 111 11 57 chr3 5761293 5767749 -221756829 - L1PA7 LINE L1 0 6154 12 24 32 0 0 chr3 5768324 5768355 -221756223 + AT_rich Low_complexity Low_complexity 1 31 0 564 295 84 40 chr3 5768457 5768708 -221755870 + MIR SINE MIR 1 262 0 372 273 23 34 chr3 5768833 5769009 -221755569 - MER104 DNA Tc2 0 180 7 269 272 65 33 chr3 5769258 5769350 -221755228 - L3 LINE CR1 -7 1570 1476 402 275 261 24 chr3 5769941 5770152 -221754426 - MIR SINE MIR 0 262 2 29 0 0 0 chr3 5770618 5770647 -221753931 + AT_rich Low_complexity Low_complexity 1 29 0 11466 35 19 3 chr3 5770647 5772829 -221751749 - L1PA3 LINE L1 -3 6152 3948 15301 34 1 0 chr3 5772829 5774795 -221749783 + L1PA3 LINE L1 1965 3932 -2214 525 111 0 22 chr3 5774911 5775001 -221749577 + MER53 DNA DNA 102 189 0 1819 196 123 5 chr3 5775001 5775399 -221749179 + MLT1F1 LTR MaLR 123 567 0 2059 111 26 65 chr3 5775539 5775926 -221748652 + THE1C LTR MaLR 1 372 -3 21 71 0 0 chr3 5776009 5776051 -221748527 + AT_rich Low_complexity Low_complexity 1 42 0 232 298 57 79 chr3 5776082 5776252 -221748326 - MIR SINE MIR -56 206 32 2192 123 0 3 chr3 5776394 5776695 -221747883 + AluSg SINE Alu 1 300 -10 2191 148 0 0 chr3 5779176 5779486 -221745092 - AluSx SINE Alu -2 310 1 317 261 114 34 chr3 5780143 5780317 -221744261 - MIR3 SINE MIR -6 202 13 * 541 327 128 0 chr3 5780265 5780476 -221744102 + MIR SINE MIR 23 260 -2 333 238 60 24 chr3 5781126 5781210 -221743368 - MIR SINE MIR -157 105 19 321 26 0 0 chr3 5781389 5781427 -221743151 + (CA)n Simple_repeat Simple_repeat 1 38 0 2386 81 35 3 chr3 5782121 5782465 -221742113 + THE1A LTR MaLR 1 355 0 705 316 50 11 chr3 5783332 5783693 -221740885 + LTR16A LTR ERVL 1 375 -75 658 291 100 9 chr3 5783904 5784124 -221740454 + MIR SINE MIR 23 262 0 1226 83 52 5 chr3 5784275 5784468 -221740110 + MLT2A1 LTR ERVL 3 204 -240 5093 83 0 0 chr3 5784468 5785163 -221739415 - L1PA4 LINE L1 -5450 696 2 * 36236 38 4 4 chr3 5785156 5790629 -221733949 + L1PA4 LINE L1 685 6152 -3 1490 97 26 4 chr3 5790666 5790892 -221733686 + MLT2A1 LTR ERVL 214 444 0 428 257 60 49 chr3 5791430 5791642 -221732936 + MLT1L LTR MaLR 366 605 -8 302 302 7 64 chr3 5791742 5791868 -221732710 - MIR3 SINE MIR -41 167 45 288 185 37 0 chr3 5791871 5791925 -221732653 - L2 LINE L2 0 3272 3217 269 313 86 31 chr3 5792783 5792911 -221731667 + MER5A DNA MER1_type 55 189 0 * 279 215 51 51 chr3 5792911 5792965 -221731613 - MIR3 SINE MIR -47 161 108 189 345 18 0 chr3 5793159 5793214 -221731364 - L2 LINE L2 -17 3296 3241 606 297 109 17 chr3 5795979 5796218 -221728360 + MIR SINE MIR 2 262 0 195 328 50 34 chr3 5796301 5796420 -221728158 - MIR SINE MIR -95 167 47 191 203 68 0 chr3 5797886 5797945 -221726633 + L2 LINE L2 1644 1706 -1608 688 279 66 44 chr3 5798059 5798378 -221726200 + MLT1I LTR MaLR 63 388 -21 1309 290 88 34 chr3 5798420 5799013 -221725565 + L2 LINE L2 1801 2425 -889 1341 203 25 0 chr3 5799027 5799268 -221725310 + MLT1C LTR MaLR 221 467 0 379 266 64 0 chr3 5801828 5801922 -221722656 - MIR SINE MIR -116 146 47 472 283 20 26 chr3 5802221 5802373 -221722205 - MIR3 SINE MIR -24 184 34 480 271 33 20 chr3 5803354 5803505 -221721073 - MIR3 SINE MIR -16 192 40 598 343 41 0 chr3 5803511 5803730 -221720848 - LTR16C LTR ERVL 0 491 264 2458 173 70 10 chr3 5804073 5804559 -221720019 - MLT2B2 LTR ERVL 0 515 1 2749 169 26 17 chr3 5804559 5805225 -221719353 - ERVL LTR ERVL 0 5654 5007 585 163 0 0 chr3 5805225 5805317 -221719261 - MLT2B1 LTR ERVL -428 92 1 637 284 80 49 chr3 5805450 5805774 -221718804 - MLT1K LTR MaLR 0 588 255 686 258 62 0 chr3 5805830 5806008 -221718570 - MER5A DNA MER1_type 0 189 1 457 141 16 132 chr3 5806032 5806153 -221718425 - MLT1K LTR MaLR -448 107 1 482 294 47 30 chr3 5806201 5806562 -221718016 + L1MEc LINE L1 1294 1660 -4736 3038 279 38 27 chr3 5806567 5807456 -221717122 + L1MEc LINE L1 3032 3946 -2269 1637 188 0 24 chr3 5807456 5807744 -221716834 + AluJo SINE Alu 11 291 -21 3038 279 38 27 chr3 5807744 5808350 -221716228 + L1MEc LINE L1 3946 4544 -1671 5245 227 42 16 chr3 5808352 5810199 -221714379 + L1MCa LINE L1 575 2662 -3945 1356 235 40 0 chr3 5810210 5810605 -221713973 + L1MCa LINE L1 3308 3718 -2708 1745 56 8 0 chr3 5810611 5810845 -221713733 + L1P LINE L1 4872 5107 -1039 213 136 45 0 chr3 5810845 5810911 -221713667 + (TA)n Simple_repeat Simple_repeat 2 70 0 6812 62 5 0 chr3 5810913 5812404 -221712174 - L1PA6 LINE L1 -13 6141 4643 5330 39 5 3 chr3 5812404 5813050 -221711528 - L1PA5 LINE L1 -2 6152 5506 31631 104 8 10 chr3 5813052 5817713 -221706865 - L1PA6 LINE L1 -1494 4652 1 320 248 0 0 chr3 5817752 5817840 -221706738 + L1PB4 LINE L1 6072 6149 -7 14183 159 29 8 chr3 5817855 5819913 -221704665 - L1MA1 LINE L1 0 7721 5557 1838 183 0 3 chr3 5819913 5820214 -221704364 - AluSx SINE Alu -12 300 1 14183 159 29 8 chr3 5820214 5821960 -221702618 - L1MA1 LINE L1 -2164 5557 3849 1859 209 57 90 chr3 5821961 5822526 -221702052 + MLT2B3 LTR ERVL 1 546 -8 10552 130 24 7 chr3 5822530 5824466 -221700112 - L1MA1 LINE L1 -3713 3852 1881 1761 163 14 20 chr3 5824467 5824811 -221699767 + L1MC1 LINE L1 5272 5613 -720 2296 169 11 13 chr3 5824814 5825263 -221699315 + L1MA7 LINE L1 5842 6289 -2 3822 153 28 36 chr3 5825280 5825703 -221698875 + L1MC1 LINE L1 5595 6011 -322 2046 145 0 7 chr3 5825703 5826007 -221698571 - AluSx SINE Alu -10 302 1 3822 153 28 36 chr3 5826007 5826328 -221698250 + L1MC1 LINE L1 6011 6333 0 634 241 42 87 chr3 5826333 5826735 -221697843 + L1ME3A LINE L1 4475 4858 -1288 244 300 85 0 chr3 5826742 5826872 -221697706 + L1ME3A LINE L1 5006 5146 -1000 4443 133 27 13 chr3 5826873 5827622 -221696956 + Tigger2 DNA MER2_type 1 759 -1959 1117 167 73 29 chr3 5827677 5827862 -221696716 + Tigger2 DNA MER2_type 2453 2653 -55 2262 116 0 0 chr3 5827862 5828164 -221696414 - AluSq SINE Alu -11 302 1 1117 167 73 29 chr3 5828164 5828223 -221696355 + Tigger2 DNA MER2_type 2653 2708 0 696 257 32 24 chr3 5828225 5828542 -221696036 + L1ME3A LINE L1 5148 5468 -694 313 236 67 0 chr3 5828550 5828639 -221695939 - L1MA9 LINE L1 -38 6274 6180 2074 123 0 10 chr3 5828639 5828931 -221695647 + AluSx SINE Alu 1 289 -23 1044 123 21 48 chr3 5828946 5829153 -221695425 + AluSq SINE Alu 132 313 0 2722 183 57 37 chr3 5829180 5829796 -221694782 - L1MA9 LINE L1 -181 6131 5504 1870 242 83 44 chr3 5829784 5830445 -221694133 + L1ME3A LINE L1 5448 6134 -36 * 23 54 0 0 chr3 5831034 5831071 -221693507 + AT_rich Low_complexity Low_complexity 1 37 0 188 208 75 0 chr3 5831106 5831159 -221693419 - MIR SINE MIR -107 155 99 328 277 149 0 chr3 5831161 5831255 -221693323 + MIR3 SINE MIR 89 196 -12 236 216 91 80 chr3 5832210 5832298 -221692280 - MIR SINE MIR -68 140 52 234 219 0 0 chr3 5832472 5832536 -221692042 + (TA)n Simple_repeat Simple_repeat 2 65 0 931 292 67 49 chr3 5833558 5834068 -221690510 - MLT1K LTR MaLR -60 528 10 26 74 0 0 chr3 5834345 5834399 -221690179 + AT_rich Low_complexity Low_complexity 1 54 0 30 0 0 0 chr3 5834727 5834757 -221689821 + AT_rich Low_complexity Low_complexity 1 30 0 2286 107 0 10 chr3 5834943 5835252 -221689326 - AluSx SINE Alu -6 306 1 194 283 110 55 chr3 5836852 5836997 -221687581 + MIR3 SINE MIR 44 196 -12 332 323 26 42 chr3 5837150 5837342 -221687236 + MIR SINE MIR 1 189 -73 2235 120 17 6 chr3 5837561 5837918 -221686660 + MER46B DNA MER2_type 1 236 0 207 306 10 31 chr3 5838642 5838740 -221685838 - MIR SINE MIR 0 262 167 42718 32 21 2 chr3 5838764 5844798 -221679780 + L1HS LINE L1 3 6155 0 266 268 85 12 chr3 5844803 5844885 -221679693 - MIR SINE MIR -133 129 42 936 300 129 12 chr3 5844955 5845445 -221679133 + MLT1H1 LTR MaLR 1 547 -8 258 200 0 33 chr3 5845673 5845733 -221678845 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 545 312 41 45 chr3 5846553 5846822 -221677756 + MLT1K LTR MaLR 317 584 -4 2399 43 13 0 chr3 5846902 5847201 -221677377 + L1PA3 LINE L1 5849 6179 0 232 36 0 0 chr3 5847201 5847229 -221677349 + (TAAAAA)n Simple_repeat Simple_repeat 5 180 0 2296 89 0 40 chr3 5847372 5847697 -221676881 - AluSx SINE Alu 0 312 1 342 0 0 0 chr3 5848620 5848658 -221675920 + (A)n Simple_repeat Simple_repeat 1 38 0 1170 266 110 39 chr3 5848977 5849639 -221674939 - L2 LINE L2 -6 3307 2608 998 214 57 21 chr3 5849644 5849975 -221674603 - L1MEc LINE L1 -4330 2066 1724 6721 26 0 0 chr3 5849978 5850790 -221673788 - L1PA3 LINE L1 0 6155 5344 2962 299 56 25 chr3 5850792 5852387 -221672191 - L1MEc LINE L1 -4675 1721 77 335 227 57 102 chr3 5852390 5852566 -221672012 - MIR3 SINE MIR -22 186 19 384 157 0 14 chr3 5852591 5852661 -221671917 - MLT1C LTR MaLR -1 466 398 1928 150 0 0 chr3 5852667 5852941 -221671637 + AluSx SINE Alu 1 274 -38 807 66 0 0 chr3 5852941 5853047 -221671531 + (GGAA)n Simple_repeat Simple_repeat 2 107 0 901 151 0 0 chr3 5853058 5853184 -221671394 + AluSg/x SINE Alu 148 273 -39 234 105 0 0 chr3 5853190 5853228 -221671350 + (GA)n Simple_repeat Simple_repeat 1 38 0 1294 228 27 49 chr3 5853232 5853640 -221670938 - MLT1C LTR MaLR -62 405 7 346 268 167 24 chr3 5855012 5855180 -221669398 - MIR3 SINE MIR -7 201 10 1214 295 164 15 chr3 5855203 5856043 -221668535 + L2 LINE L2 2116 3082 -231 2265 110 7 0 chr3 5856241 5856541 -221668037 - AluSq SINE Alu -11 302 1 1055 173 0 0 chr3 5856574 5856736 -221667842 - FAM SINE Alu -12 163 2 336 322 77 11 chr3 5860033 5860216 -221664362 + L2 LINE L2 3118 3312 -1 443 198 16 24 chr3 5863304 5863430 -221661148 + L1ME4a LINE L1 5993 6117 -4 21 0 0 0 chr3 5863976 5863997 -221660581 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 5864253 5864274 -221660304 + AT_rich Low_complexity Low_complexity 1 21 0 354 370 79 46 chr3 5864939 5865242 -221659336 - L2 LINE L2 -18 3254 2942 225 273 116 88 chr3 5865401 5865617 -221658961 + L2 LINE L2 2925 3146 -126 1084 215 66 78 chr3 5866624 5866645 -221657933 - MLT1B LTR MaLR 0 390 370 1942 185 25 3 chr3 5866645 5867002 -221657576 - MLT1A1 LTR MaLR 0 365 1 1084 215 66 78 chr3 5867002 5867375 -221657203 - MLT1B LTR MaLR -20 370 1 623 87 19 0 chr3 5867383 5867486 -221657092 + (TGGA)n Simple_repeat Simple_repeat 3 107 0 554 149 0 9 chr3 5867486 5867593 -221656985 + (GGGA)n Simple_repeat Simple_repeat 3 108 0 208 260 0 0 chr3 5867762 5867812 -221656766 - L2 LINE L2 -8 3305 3256 465 269 51 32 chr3 5867893 5868049 -221656529 - MER5B DNA MER1_type -1 177 19 1744 238 97 33 chr3 5869009 5869648 -221654930 + MER20B DNA MER1_type 96 775 -8 214 208 0 38 chr3 5869959 5870012 -221654566 - MIR SINE MIR -51 211 161 10018 86 13 1 chr3 5870034 5872200 -221652378 - L1PA7 LINE L1 -2 6152 3969 8740 98 30 9 chr3 5872200 5873588 -221650990 + L1PA7 LINE L1 2546 3963 -2183 212 348 102 0 chr3 5873592 5873710 -221650868 - MIR SINE MIR -108 154 25 499 257 22 15 chr3 5874386 5874522 -221650056 + MER117 DNA MER1_type 8 144 -53 275 297 0 0 chr3 5874607 5874671 -221649907 - MIR SINE MIR -64 144 81 2805 19 0 0 chr3 5874672 5874985 -221649593 + AluYb8 SINE Alu 1 313 -5 3808 90 8 4 chr3 5875016 5875548 -221649030 + L1PA14 LINE L1 5627 6160 -1 243 290 40 10 chr3 5875637 5875737 -221648841 - MIR SINE MIR -23 239 137 291 65 87 0 chr3 5877002 5877048 -221647530 + MADE1 DNA Mariner 4 53 -27 372 295 132 44 chr3 5877121 5877262 -221647316 - MIR SINE MIR -1 261 91 2387 106 3 0 chr3 5877262 5877573 -221647005 + AluSp SINE Alu 1 312 -1 372 295 132 44 chr3 5877573 5877658 -221646920 - MIR SINE MIR -171 91 15 192 77 0 0 chr3 5878022 5878048 -221646530 + (GAAAA)n Simple_repeat Simple_repeat 3 28 0 225 302 58 12 chr3 5878663 5878749 -221645829 + MIR SINE MIR 25 114 -148 364 325 98 0 chr3 5879009 5879172 -221645406 - MIR SINE MIR -1 261 83 415 126 11 23 chr3 5879599 5879686 -221644892 + (GGGA)n Simple_repeat Simple_repeat 1 86 0 1038 265 63 66 chr3 5879860 5880302 -221644276 + L2 LINE L2 2873 3313 0 215 224 17 17 chr3 5880307 5880365 -221644213 - MIR SINE MIR -123 139 82 283 306 231 27 chr3 5880391 5880685 -221643893 + L2 LINE L2 2910 3263 -50 217 368 0 0 chr3 5880710 5880786 -221643792 + MIR SINE MIR 185 260 -2 934 158 20 0 chr3 5881715 5881861 -221642717 - FAM SINE Alu -14 171 23 294 264 0 11 chr3 5882746 5882837 -221641741 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 486 0 0 0 chr3 5883155 5883209 -221641369 + (CA)n Simple_repeat Simple_repeat 2 55 0 228 35 0 0 chr3 5883525 5883554 -221641024 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1270 166 107 112 chr3 5883568 5883960 -221640618 + MLT1B LTR MaLR 1 390 0 209 290 108 21 chr3 5884564 5884657 -221639921 + L3 LINE CR1 1383 1483 -94 * 234 318 91 45 chr3 5884650 5884782 -221639796 - L2 LINE L2 0 3313 3176 2219 108 0 3 chr3 5885168 5885464 -221639114 + AluSc SINE Alu 2 296 -13 322 304 77 0 chr3 5886231 5886399 -221638179 + L1ME4a LINE L1 5636 5816 -305 414 275 133 38 chr3 5886486 5886726 -221637852 + L1ME4a LINE L1 5856 6118 -3 287 309 11 11 chr3 5886901 5886995 -221637583 + MIR3 SINE MIR 109 202 -6 315 281 22 50 chr3 5887169 5887308 -221637270 - MIR3 SINE MIR -20 188 54 5166 146 9 25 chr3 5887581 5888683 -221635895 + L1PA16 LINE L1 4686 5762 -404 2216 129 0 37 chr3 5888683 5889032 -221635546 - MER1B DNA MER1_type 0 337 2 5166 146 9 25 chr3 5889032 5889386 -221635192 + L1PA16 LINE L1 5762 6120 -46 7133 128 52 2 chr3 5889399 5890618 -221633960 - HSMAR2 DNA Mariner -22 1280 2 420 307 14 43 chr3 5890769 5890909 -221633669 + MIR3 SINE MIR 4 139 -69 331 328 0 73 chr3 5891045 5891222 -221633356 - L2 LINE L2 -227 3045 2882 215 200 122 78 chr3 5892158 5892248 -221632330 + L3 LINE CR1 295 388 -1189 3494 42 0 5 chr3 5892737 5893166 -221631412 - L1PA5 LINE L1 0 6154 5728 3621 35 29 3 chr3 5893168 5893804 -221630774 + L1PA5 LINE L1 5087 5735 -419 1556 201 223 2 chr3 5893855 5894267 -221630311 - MLT1F LTR MaLR 0 542 40 193 194 0 0 chr3 5894307 5894343 -221630235 - L2 LINE L2 -9 3304 3269 274 336 141 32 chr3 5894799 5895346 -221629232 - L2 LINE L2 -7 3306 2703 2162 113 0 7 chr3 5895899 5896201 -221628377 + AluSx SINE Alu 1 300 -12 631 293 96 29 chr3 5896639 5896984 -221627594 - LTR16C LTR ERVL -34 457 90 22 35 0 0 chr3 5897125 5897154 -221627424 + AT_rich Low_complexity Low_complexity 1 29 0 585 259 113 29 chr3 5897423 5897662 -221626916 + MIR SINE MIR 1 259 -3 444 314 182 0 chr3 5897869 5898089 -221626489 + MIR SINE MIR 3 262 0 364 222 99 0 chr3 5898096 5898177 -221626401 - L2 LINE L2 -4 3268 3180 204 216 0 0 chr3 5898311 5898362 -221626216 + GA-rich Low_complexity Low_complexity 4 54 0 382 327 80 12 chr3 5898913 5899075 -221625503 - MIR SINE MIR -56 206 34 781 165 0 24 chr3 5899233 5899351 -221625227 + FLAM_A SINE Alu 1 117 -185 294 73 0 0 chr3 5899351 5899392 -221625186 + (CA)n Simple_repeat Simple_repeat 2 42 0 964 222 46 62 chr3 5900252 5900333 -221624245 + MER33 DNA MER1_type 1 82 -2503 2059 173 42 58 chr3 5900333 5900783 -221623795 + LTR47B LTR ERVL 1 443 0 964 222 46 62 chr3 5900783 5901007 -221623571 + MER33 DNA MER1_type 82 301 -23 229 330 43 0 chr3 5901960 5902075 -221622503 + MIR3 SINE MIR 37 156 -52 588 274 18 50 chr3 5902629 5902848 -221621730 - MIR SINE MIR -20 242 31 215 363 127 0 chr3 5903888 5904045 -221620533 - MIR SINE MIR -2 260 84 228 314 108 29 chr3 5904130 5904232 -221620346 + MIR SINE MIR 34 143 -65 314 262 172 21 chr3 5904273 5904418 -221620160 + MIR SINE MIR 36 202 -60 424 56 0 0 chr3 5904423 5904477 -221620101 - MLT2A1 LTR ERVL 0 444 391 321 169 0 0 chr3 5904478 5904537 -221620041 + (TA)n Simple_repeat Simple_repeat 1 59 0 235 292 11 0 chr3 5904537 5904626 -221619952 + L1MC4 LINE L1 6614 6703 -1339 208 151 57 0 chr3 5904627 5904680 -221619898 + (TA)n Simple_repeat Simple_repeat 2 57 0 2256 145 5 30 chr3 5904693 5905066 -221619512 - THE1B LTR MaLR 0 364 1 233 238 71 36 chr3 5905350 5905434 -221619144 + MIR SINE MIR 96 182 -80 518 276 13 26 chr3 5905834 5905990 -221618588 + MIR SINE MIR 2 155 -107 2274 229 92 24 chr3 5906023 5906600 -221617978 + MLT1E2 LTR MaLR 1 616 -10 278 235 82 0 chr3 5906829 5906914 -221617664 - MIR SINE MIR -65 197 106 224 307 183 7 chr3 5907502 5907655 -221616923 + MER5A DNA MER1_type 9 188 -1 1015 281 139 22 chr3 5908210 5908662 -221615916 - MLT1D LTR MaLR 0 505 1 224 194 117 48 chr3 5908773 5908876 -221615702 + MIR SINE MIR 139 248 -14 216 0 0 0 chr3 5909889 5909913 -221614665 + (A)n Simple_repeat Simple_repeat 1 24 0 6069 200 45 9 chr3 5910529 5911836 -221612742 - L1PA12 LINE L1 -4827 2754 1688 4065 2 0 0 chr3 5912261 5912706 -221611872 - L1HS LINE L1 0 6155 5711 1311 106 4 65 chr3 5912749 5912778 -221611800 + L1MA9 LINE L1 6082 6111 -201 1552 194 31 17 chr3 5912778 5913067 -221611511 + AluJo SINE Alu 1 293 -19 1311 106 4 65 chr3 5913067 5913282 -221611296 + L1MA9 LINE L1 6111 6311 -1 645 291 131 43 chr3 5913477 5913852 -221610726 + L3 LINE CR1 623 1030 -547 227 333 0 0 chr3 5913907 5913964 -221610614 + L3 LINE CR1 1409 1465 -112 2223 126 3 0 chr3 5914101 5914411 -221610167 - AluSx SINE Alu -1 311 1 259 305 21 57 chr3 5915114 5915255 -221609323 + MIR SINE MIR 81 216 -46 291 284 35 71 chr3 5915290 5915321 -221609257 - MIR SINE MIR -58 204 173 2612 133 22 38 chr3 5915321 5915359 -221609219 + MER65A LTR ERV1 2 39 -406 204 97 0 0 chr3 5915359 5915390 -221609188 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2612 133 22 38 chr3 5915390 5915802 -221608776 + MER65A LTR ERV1 39 445 0 291 284 35 71 chr3 5915802 5915911 -221608667 - MIR SINE MIR -89 173 69 551 252 80 101 chr3 5916018 5916442 -221608136 + LTR33 LTR ERVL 93 507 -14 323 291 45 27 chr3 5918014 5918060 -221606518 + MIR SINE MIR 95 139 -123 1382 198 77 57 chr3 5918060 5918410 -221606168 + MLT2C1 LTR ERVL 1 361 -36 411 56 0 0 chr3 5918410 5918464 -221606114 + (TCCA)n Simple_repeat Simple_repeat 3 56 0 1382 198 77 57 chr3 5918464 5918502 -221606076 + MLT2C1 LTR ERVL 361 397 0 323 291 45 27 chr3 5918502 5918565 -221606013 + MIR SINE MIR 139 206 -56 809 224 0 12 chr3 5918943 5919108 -221605470 + FRAM SINE Alu 1 162 -14 562 253 93 0 chr3 5919356 5919506 -221605072 + MLT1J2 LTR MaLR 18 181 -269 962 293 96 48 chr3 5919518 5920386 -221604192 + L2 LINE L2 2357 3253 -60 601 298 46 21 chr3 5920900 5921138 -221603440 - MIR SINE MIR -16 246 3 198 317 17 17 chr3 5921198 5921258 -221603320 + L2 LINE L2 3002 3061 -211 279 326 12 12 chr3 5921435 5921521 -221603057 - MIR SINE MIR -149 113 28 216 363 124 0 chr3 5921839 5921952 -221602626 + L2 LINE L2 3183 3309 -4 868 293 162 25 chr3 5922115 5922474 -221602104 - MLT1I LTR MaLR 0 409 2 4602 165 47 6 chr3 5922509 5923299 -221601279 - LTR1B LTR ERV1 0 826 5 288 195 158 0 chr3 5923409 5923491 -221601087 + MIR SINE MIR 91 185 -77 2032 141 0 22 chr3 5923499 5923818 -221600760 + AluJb SINE Alu 1 312 0 197 239 22 0 chr3 5923865 5923911 -221600667 + L2 LINE L2 3210 3256 -16 1769 190 22 28 chr3 5925052 5925419 -221599159 - MLT1A1 LTR MaLR 0 467 1 442 141 256 0 chr3 5925766 5925844 -221598734 - Tigger1 DNA MER2_type 0 2418 2321 * 4912 135 7 0 chr3 5925842 5926569 -221598009 - Tigger1 DNA MER2_type -1659 759 28 526 287 23 6 chr3 5927823 5927997 -221596581 - MIR SINE MIR -10 252 76 229 344 10 0 chr3 5928318 5928414 -221596164 - MIR SINE MIR 0 262 166 2131 162 43 94 chr3 5928432 5928511 -221596067 - MLT1D LTR MaLR 0 505 424 1673 191 47 7 chr3 5928511 5928809 -221595769 - AluJo SINE Alu -2 310 1 2131 162 43 94 chr3 5928809 5929259 -221595319 - MLT1D LTR MaLR -81 424 3 27 29 0 0 chr3 5929398 5929432 -221595146 + AT_rich Low_complexity Low_complexity 1 34 0 1391 211 68 4 chr3 5929432 5929712 -221594866 + AluJo SINE Alu 1 298 -14 353 269 17 25 chr3 5929712 5929779 -221594799 + L1ME4a LINE L1 6001 6068 -53 2419 78 0 16 chr3 5929779 5930086 -221594492 - AluY SINE Alu -9 302 1 353 269 17 25 chr3 5930086 5930137 -221594441 + L1ME4a LINE L1 6068 6118 -3 356 325 33 25 chr3 5930520 5930681 -221593897 + MIR SINE MIR 19 189 -27 217 161 195 81 chr3 5930858 5930945 -221593633 - MIR SINE MIR -146 116 20 231 250 0 50 chr3 5930998 5931058 -221593520 - MIR SINE MIR -133 75 19 * 834 267 49 20 chr3 5931029 5931276 -221593302 - MIR SINE MIR -7 255 2 343 318 91 86 chr3 5932625 5933222 -221591356 - L2 LINE L2 -2 3270 2652 537 226 80 15 chr3 5933342 5933479 -221591099 + MIR SINE MIR 9 154 -108 1206 236 35 39 chr3 5933486 5933796 -221590782 - MER46C DNA MER2_type -20 318 10 361 177 63 0 chr3 5933805 5933884 -221590694 + MIR SINE MIR 153 236 -26 263 235 59 0 chr3 5933948 5934016 -221590562 + MIR3 SINE MIR 126 197 -11 1972 158 119 0 chr3 5934099 5934207 -221590371 - MER57A LTR ERV1 0 403 309 3594 131 2 2 chr3 5934207 5934704 -221589874 + LOR1a LTR ERV1 1 497 0 1972 158 119 0 chr3 5934704 5934955 -221589623 - MER57A LTR ERV1 -94 309 1 337 255 0 103 chr3 5935304 5935449 -221589129 + MIR SINE MIR 77 206 -56 3708 113 10 8 chr3 5935493 5935997 -221588581 - MER84 LTR ERV1 0 507 3 3489 138 123 7 chr3 5936139 5936740 -221587838 + LTR51 LTR ERV1 1 671 0 186 239 0 22 chr3 5936763 5936809 -221587769 - MIR SINE MIR -36 226 182 187 233 0 0 chr3 5937027 5937070 -221587508 - MIR SINE MIR -102 160 118 4221 139 16 3 chr3 5937085 5937712 -221586866 + MER41B LTR ERV1 1 635 0 266 119 0 0 chr3 5937721 5937763 -221586815 + AluY SINE Alu 187 228 -73 228 211 135 0 chr3 5937768 5937820 -221586758 - MIR SINE MIR -199 63 5 325 291 48 0 chr3 5938697 5938800 -221585778 - MIR SINE MIR 0 262 155 784 264 40 54 chr3 5938902 5939178 -221585400 - LTR33 LTR ERVL -249 272 1 2162 167 67 42 chr3 5939427 5939877 -221584701 + LOR1b LTR ERV1 1 461 0 758 319 63 21 chr3 5940233 5940612 -221583966 - ERVL LTR ERVL -898 4866 4472 366 294 103 7 chr3 5940961 5941097 -221583481 - MIR SINE MIR -108 154 6 1445 148 40 37 chr3 5941372 5941697 -221582881 - MER33 DNA MER1_type -5 319 1 180 0 0 0 chr3 5941797 5941817 -221582761 + (GAA)n Simple_repeat Simple_repeat 2 21 0 222 296 133 20 chr3 5941919 5942017 -221582561 - MIR SINE MIR -134 128 20 183 80 0 0 chr3 5942024 5942049 -221582529 + (TAA)n Simple_repeat Simple_repeat 2 26 0 3433 178 54 76 chr3 5942349 5942677 -221581901 + MER45B DNA AcHobo 2 336 -704 5732 80 27 1 chr3 5942677 5943424 -221581154 + MER4E LTR ERV1 1 766 0 3433 178 54 76 chr3 5943424 5943669 -221580909 + MER45B DNA AcHobo 336 554 -486 2220 109 13 0 chr3 5943669 5943971 -221580607 - AluY SINE Alu -5 306 1 3433 178 54 76 chr3 5943971 5944210 -221580368 + MER45B DNA AcHobo 554 797 -243 34921 93 7 34 chr3 5944211 5949758 -221574820 + L1PA6 LINE L1 4 5338 -816 2426 62 0 16 chr3 5949758 5950063 -221574515 + AluY SINE Alu 1 300 -11 34921 93 7 34 chr3 5950063 5950851 -221573727 + L1PA6 LINE L1 5338 6146 -8 1305 141 32 8 chr3 5950851 5951100 -221573478 + MER45B DNA AcHobo 786 1040 0 340 289 0 10 chr3 5951115 5951212 -221573366 - MER117 DNA MER1_type -34 163 68 768 230 57 97 chr3 5951567 5951651 -221572927 - MIR SINE MIR -7 255 169 674 140 0 113 chr3 5951651 5951801 -221572777 + FLAM_C SINE Alu 1 133 0 768 230 57 97 chr3 5951801 5951964 -221572614 - MIR SINE MIR -93 169 18 245 195 0 0 chr3 5952307 5952348 -221572230 - L3 LINE CR1 -10 1567 1527 343 253 142 37 chr3 5952349 5952511 -221572067 + MER117 DNA MER1_type 1 179 -18 568 343 55 17 chr3 5952518 5952754 -221571824 + MIR SINE MIR 2 246 -16 255 286 39 26 chr3 5952852 5952929 -221571649 - MIR3 SINE MIR -48 160 83 387 255 33 72 chr3 5952951 5953104 -221571474 + MIR3 SINE MIR 35 181 -27 303 276 0 13 chr3 5953795 5953871 -221570707 + tRNA-Thr-ACA tRNA tRNA 1 75 -1 752 261 71 14 chr3 5953888 5954099 -221570479 + MIR SINE MIR 3 225 -37 201 250 44 59 chr3 5954145 5954213 -221570365 + L2 LINE L2 1366 1432 -1882 * 370 253 0 141 chr3 5954169 5954339 -221570239 - MIR3 SINE MIR -60 148 3 206 319 160 25 chr3 5954370 5954489 -221570089 + L2 LINE L2 3171 3305 -8 488 294 86 12 chr3 5954575 5954738 -221569840 + MIR SINE MIR 1 175 -87 515 214 26 0 chr3 5954759 5954876 -221569702 + MLT2C1 LTR ERVL 1 120 -277 569 168 81 46 chr3 5955047 5955220 -221569358 + L1MC4 LINE L1 7858 8036 -6 1815 155 3 21 chr3 5955228 5955518 -221569060 + AluJb SINE Alu 3 287 -25 43 47 0 0 chr3 5955523 5955587 -221568991 + AT_rich Low_complexity Low_complexity 1 64 0 22 35 0 0 chr3 5955681 5955710 -221568868 + AT_rich Low_complexity Low_complexity 1 29 0 186 311 90 25 chr3 5956700 5956822 -221567756 - L2 LINE L2 -15 3298 3169 345 234 62 23 chr3 5956917 5957045 -221567533 + HAL1b LINE L1 1216 1348 0 413 193 48 0 chr3 5959377 5959460 -221565118 + MIR3 SINE MIR 82 168 -40 315 264 101 39 chr3 5959487 5959629 -221564949 + MIR SINE MIR 30 145 -63 2208 129 33 30 chr3 5959695 5960058 -221564520 + THE1B LTR MaLR 1 364 0 228 240 72 40 chr3 5960218 5960317 -221564261 + MIR SINE MIR 34 145 -73 399 282 215 19 chr3 5960328 5960537 -221564041 - MIR SINE MIR -1 261 12 228 93 233 0 chr3 5960539 5960582 -221563996 - Charlie1 DNA MER1_type 0 2761 2709 * 453 160 19 19 chr3 5960574 5960680 -221563898 - Charlie1 DNA MER1_type -208 2553 2448 548 279 37 81 chr3 5961456 5961753 -221562825 + L2 LINE L2 2994 3277 -36 226 143 41 20 chr3 5961929 5961978 -221562600 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 502 231 26 8 chr3 5963061 5963178 -221561400 + L2 LINE L2 3154 3272 0 4500 168 37 30 chr3 5963209 5963899 -221560679 + MER6 DNA MER2_type 1 700 -165 1455 119 92 12 chr3 5963899 5964150 -221560428 + AluSg SINE Alu 40 310 0 4500 168 37 30 chr3 5964150 5964318 -221560260 + MER6 DNA MER2_type 700 865 0 247 312 27 54 chr3 5965305 5965491 -221559087 + MIR3 SINE MIR 16 196 -12 612 322 45 25 chr3 5966059 5966304 -221558274 + MIR SINE MIR 13 262 0 271 377 29 58 chr3 5967295 5967571 -221557007 - L2 LINE L2 0 3272 3005 346 262 98 8 chr3 5967592 5967714 -221556864 - MER94 DNA DNA -1 133 1 473 305 145 15 chr3 5969779 5970041 -221554537 - MER102b DNA MER1_type -3 338 43 2338 90 0 7 chr3 5970310 5970620 -221553958 + AluSx SINE Alu 1 308 -4 7082 159 33 43 chr3 5972302 5974749 -221549829 + L1MA6 LINE L1 3791 6214 -86 2215 119 43 27 chr3 5974849 5975218 -221549360 - THE1C LTR MaLR 0 375 1 225 344 47 0 chr3 5975712 5975776 -221548802 + L2 LINE L2 3114 3180 -92 186 137 68 14 chr3 5975855 5975928 -221548650 + GA-rich Low_complexity Low_complexity 2 78 0 2309 112 0 7 chr3 5975960 5976263 -221548315 - AluSx SINE Alu -11 301 1 371 300 106 11 chr3 5976697 5976877 -221547701 - MIR SINE MIR 0 262 66 460 250 75 42 chr3 5977073 5977097 -221547481 + LTR33 LTR ERVL 3 25 -496 2001 142 44 33 chr3 5977097 5977457 -221547121 + THE1B LTR MaLR 1 364 0 460 250 75 42 chr3 5977457 5977644 -221546934 + LTR33 LTR ERVL 25 221 -300 270 56 0 0 chr3 5977707 5977743 -221546835 + (TC)n Simple_repeat Simple_repeat 1 36 0 2725 141 16 22 chr3 5977887 5978397 -221546181 + L1MA7 LINE L1 5613 6119 -172 316 317 178 26 chr3 5978984 5979214 -221545364 - L1MC4a LINE L1 -1928 5880 5616 10570 44 3 0 chr3 5980650 5982728 -221541850 + L1PA6 LINE L1 4066 6150 -4 1279 143 33 8 chr3 5982728 5982973 -221541605 + MER45B DNA AcHobo 790 1040 0 348 289 0 10 chr3 5982988 5983085 -221541493 - MER117 DNA MER1_type -34 163 68 334 390 45 35 chr3 5983900 5984303 -221540275 - L2 LINE L2 -585 2729 2323 742 234 6 12 chr3 5984374 5984541 -221540037 - MIR SINE MIR -23 239 74 10042 45 6 10 chr3 5984545 5985895 -221538683 - L1P LINE L1 -758 5388 4044 307 358 80 12 chr3 5986241 5986403 -221538175 - MIR SINE MIR -56 206 34 734 165 0 24 chr3 5986561 5986679 -221537899 + FLAM_A SINE Alu 1 117 -185 294 73 0 0 chr3 5986679 5986720 -221537858 + (CA)n Simple_repeat Simple_repeat 2 42 0 550 246 71 28 chr3 5987580 5987661 -221536917 + MER33 DNA MER1_type 1 77 -2508 1868 189 38 53 chr3 5987661 5988111 -221536467 + LTR47B LTR ERVL 1 443 0 550 246 71 28 chr3 5988111 5988240 -221536338 + MER33 DNA MER1_type 77 220 -104 432 0 0 0 chr3 5988244 5988292 -221536286 + (TA)n Simple_repeat Simple_repeat 2 49 0 7744 6 0 0 chr3 5988296 5989386 -221535192 - L1HS LINE L1 0 6155 5066 2083 26 0 8 chr3 5989382 5989646 -221534932 + L1P LINE L1 3581 3842 -2304 * 1371 221 3 3 chr3 5989788 5990073 -221534505 - AluSp SINE Alu -28 285 1 363 180 0 0 chr3 5991557 5991646 -221532932 - Charlie5 DNA MER1_type -50 2562 2474 13408 45 1 3 chr3 5991650 5993411 -221531167 - L1P LINE L1 -1075 5071 3316 232 206 38 0 chr3 5993553 5993684 -221530894 + C-rich Low_complexity Low_complexity 3 138 0 2020 213 59 6 chr3 5993692 5994231 -221530347 - L1MB7 LINE L1 -14 6170 5603 306 206 0 16 chr3 5994234 5994297 -221530281 + L1MCa LINE L1 2006 2067 -4359 1497 183 59 7 chr3 5994302 5994575 -221530003 - AluJo SINE Alu -25 287 1 333 159 95 0 chr3 5994575 5994638 -221529940 - L1MB7 LINE L1 -554 5620 5552 806 313 57 32 chr3 5994743 5995149 -221529429 + LTR16A LTR ERVL 1 416 -34 1512 159 12 12 chr3 5995577 5995828 -221528750 + AluJo SINE Alu 13 263 -49 495 0 0 0 chr3 5995845 5995900 -221528678 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 269 339 110 9 chr3 5995956 5996065 -221528513 - MIR3 SINE MIR -3 205 86 183 80 0 0 chr3 5996915 5996940 -221527638 + (TG)n Simple_repeat Simple_repeat 1 25 0 274 44 22 22 chr3 5996940 5996985 -221527593 + (GA)n Simple_repeat Simple_repeat 2 46 0 205 204 23 0 chr3 5996985 5997029 -221527549 + GA-rich Low_complexity Low_complexity 5 49 0 407 325 20 24 chr3 5997221 5997406 -221527172 + MIR SINE MIR 52 235 -27 1089 41 75 0 chr3 5998042 5998189 -221526389 + L1PA4 LINE L1 5992 6149 -6 186 43 0 0 chr3 5998467 5998490 -221526088 + (CA)n Simple_repeat Simple_repeat 2 24 0 253 376 86 4 chr3 5998575 5998766 -221525812 + MIR3 SINE MIR 2 204 -58 195 42 0 0 chr3 5998849 5998873 -221525705 + (A)n Simple_repeat Simple_repeat 1 24 0 6557 22 0 53 chr3 5998920 5999801 -221524777 - L1PA3 LINE L1 0 6155 5322 * 15777 32 3 0 chr3 5999798 6001782 -221522796 + L1PA3 LINE L1 3309 5298 -848 2237 106 3 13 chr3 6002204 6002515 -221522063 - AluSx SINE Alu -4 308 1 237 366 60 25 chr3 6003650 6003885 -221520693 - L2 LINE L2 -221 3051 2809 1144 242 104 41 chr3 6004441 6004929 -221519649 + MLT1K LTR MaLR 12 530 -58 957 195 91 0 chr3 6006304 6006525 -221518053 - MLT1D LTR MaLR -1 504 264 1001 156 25 0 chr3 6006614 6006774 -221517804 - AluSg/x SINE Alu -12 298 135 343 284 74 14 chr3 6006850 6006998 -221517580 + Charlie8 DNA MER1_type 5 161 -2256 23 33 0 0 chr3 6007595 6007625 -221516953 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr3 6008078 6008101 -221516477 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 40643 35 22 1 chr3 6008101 6014118 -221510460 - L1PA2 LINE L1 -11 6144 1 21 0 0 0 chr3 6014913 6014934 -221509644 + AT_rich Low_complexity Low_complexity 1 21 0 279 79 0 0 chr3 6014987 6015025 -221509553 + (TG)n Simple_repeat Simple_repeat 2 39 0 1459 156 44 10 chr3 6015307 6015602 -221508976 - Tigger1 DNA MER2_type 0 2418 2114 772 133 67 0 chr3 6015587 6015722 -221508856 + Tigger1 DNA MER2_type 941 1084 -1334 * 10438 139 46 38 chr3 6015732 6017197 -221507381 - Tigger1 DNA MER2_type -296 2122 632 1638 149 30 11 chr3 6017197 6017466 -221507112 - AluSx SINE Alu -38 274 1 10438 139 46 38 chr3 6017466 6018095 -221506483 - Tigger1 DNA MER2_type -1786 632 10 264 368 18 18 chr3 6019412 6019526 -221505052 - MIR SINE MIR -115 147 34 2282 112 7 0 chr3 6020667 6020972 -221503606 + AluSg SINE Alu 1 307 -3 26332 113 21 16 chr3 6020974 6025301 -221499277 + L1P LINE L1 11 4362 -1784 1469 213 68 24 chr3 6025331 6025712 -221498866 + LTR9 LTR ERV1 215 612 0 338 357 61 5 chr3 6025775 6025977 -221498601 - MIR SINE MIR -30 232 20 31 82 0 0 chr3 6026496 6026569 -221498009 + AT_rich Low_complexity Low_complexity 1 73 0 269 317 99 5 chr3 6026630 6026832 -221497746 - L1ME LINE L1 -289 5832 5612 13436 84 8 0 chr3 6026961 6029569 -221495009 + L1PA7 LINE L1 3509 6138 -16 2814 174 40 10 chr3 6029573 6030752 -221493826 + L1MC1 LINE L1 4992 6321 -12 195 42 0 0 chr3 6030752 6030776 -221493802 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 658 182 0 0 chr3 6030783 6030893 -221493685 - FLAM_A SINE Alu -32 110 1 1196 215 34 4 chr3 6031179 6031412 -221493166 + AluJb SINE Alu 50 289 -23 886 316 149 25 chr3 6031875 6032398 -221492180 + L2 LINE L2 2154 2741 -573 208 383 0 54 chr3 6032515 6032682 -221491896 + L2 LINE L2 2897 3054 -218 26 30 0 0 chr3 6033085 6033118 -221491460 + AT_rich Low_complexity Low_complexity 1 33 0 305 254 175 26 chr3 6033118 6033232 -221491346 - MIR3 SINE MIR -40 168 38 356 362 8 8 chr3 6036000 6036127 -221488451 - MIR3 SINE MIR -6 202 76 2644 219 95 37 chr3 6036474 6037229 -221487349 + MER21B LTR ERV1 13 811 -52 1909 167 10 6 chr3 6037323 6037634 -221486944 - AluJo SINE Alu 0 312 1 548 322 70 35 chr3 6037742 6037941 -221486637 - MIR SINE MIR -1 261 56 234 345 84 28 chr3 6038346 6038488 -221486090 + MIR SINE MIR 6 155 -107 407 269 156 19 chr3 6039226 6039438 -221485140 + L2 LINE L2 2804 3044 -228 494 261 106 6 chr3 6039953 6040133 -221484445 + L2 LINE L2 3114 3311 -2 840 217 33 5 chr3 6040285 6040469 -221484109 + MER5A DNA MER1_type 1 189 0 330 302 86 7 chr3 6040586 6040725 -221483853 + MIR SINE MIR 2 151 -111 2316 110 0 3 chr3 6040797 6041107 -221483471 + AluSc SINE Alu 1 309 0 265 321 46 9 chr3 6041128 6041237 -221483341 - MIR SINE MIR -2 260 148 266 202 95 24 chr3 6042351 6042435 -221482143 - MLT1K LTR MaLR -7 581 492 410 325 7 13 chr3 6043419 6043573 -221481005 - MIR SINE MIR -109 153 1 736 295 13 30 chr3 6043887 6044121 -221480457 - MIR SINE MIR -19 243 14 191 309 119 8 chr3 6044429 6044555 -221480023 + MIR SINE MIR 62 201 -7 241 243 121 43 chr3 6045119 6045259 -221479319 - L1ME4a LINE L1 -16 6105 5955 276 223 88 34 chr3 6045374 6045522 -221479056 - L1ME4a LINE L1 -1 6120 5965 484 259 0 36 chr3 6045635 6045747 -221478831 + L2 LINE L2 3165 3272 0 270 0 0 0 chr3 6045908 6045938 -221478640 + (CA)n Simple_repeat Simple_repeat 2 31 0 680 273 18 6 chr3 6046530 6046695 -221477883 - MIR3 SINE MIR -9 199 33 227 190 17 0 chr3 6046772 6046830 -221477748 + GA-rich Low_complexity Low_complexity 4 62 0 527 294 43 27 chr3 6047486 6047670 -221476908 - MER5A DNA MER1_type -2 187 1 478 267 47 34 chr3 6047902 6048113 -221476465 + MIR3 SINE MIR 10 223 -39 22 35 0 0 chr3 6049039 6049068 -221475510 + AT_rich Low_complexity Low_complexity 1 29 0 802 166 18 31 chr3 6049072 6049235 -221475343 - MLT1B LTR MaLR -45 345 185 40 0 0 0 chr3 6049623 6049663 -221474915 + AT_rich Low_complexity Low_complexity 1 40 0 366 0 56 0 chr3 6049812 6049866 -221474712 + (TA)n Simple_repeat Simple_repeat 1 57 0 29494 100 15 7 chr3 6049868 6055602 -221468976 - L1PA7 LINE L1 -16 6453 648 363 202 0 24 chr3 6055600 6055684 -221468894 - L1ME LINE L1 -654 5788 5707 * 428 281 17 6 chr3 6055717 6055895 -221468683 - L1ME LINE L1 -958 5468 5289 1396 83 10 0 chr3 6055906 6056111 -221468467 + L1PA13 LINE L1 5855 6061 -102 400 70 0 0 chr3 6056111 6056168 -221468410 - MLT2B1 LTR ERVL 0 520 464 326 183 42 0 chr3 6056173 6056244 -221468334 + L1MCa LINE L1 1995 2068 -4358 2750 111 15 0 chr3 6056257 6056664 -221467914 - MLT2A2 LTR ERVL -40 413 1 607 102 51 0 chr3 6056666 6056764 -221467814 + L1PA13 LINE L1 6059 6161 -2 1171 237 95 43 chr3 6056764 6057184 -221467394 - L1ME LINE L1 -1162 5264 4800 2367 97 0 0 chr3 6057184 6057474 -221467104 + AluSx SINE Alu 1 290 -22 1171 237 95 43 chr3 6057474 6057673 -221466905 - L1ME LINE L1 -1626 4800 4613 297 347 56 0 chr3 6057878 6058022 -221466556 - MIR3 SINE MIR -3 205 54 771 224 106 8 chr3 6058249 6058495 -221466083 + L1M4 LINE L1 3504 3773 -2373 * 5047 181 48 50 chr3 6058494 6059739 -221464839 - L1ME LINE L1 -5143 1283 41 2732 241 65 2 chr3 6059739 6060572 -221464006 + L1ME1 LINE L1 3819 4703 -1443 12479 170 29 10 chr3 6060575 6061934 -221462644 + L1MA3 LINE L1 13 1345 -6220 1229 167 121 74 chr3 6061934 6062364 -221462214 - LTR7 LTR ERV1 0 450 1 12479 170 29 10 chr3 6062364 6064640 -221459938 + L1MA3 LINE L1 1345 4405 -3160 5957 136 35 7 chr3 6064639 6066386 -221458192 + L1MA3 LINE L1 5939 7724 0 * 3321 214 64 36 chr3 6066388 6066594 -221457984 + L1ME1 LINE L1 4699 4898 -1268 3012 166 10 53 chr3 6066594 6067173 -221457405 - MLT2B3 LTR ERVL 0 554 1 3321 214 64 36 chr3 6067173 6068383 -221456195 + L1ME1 LINE L1 4898 6157 -9 1557 142 59 4 chr3 6069977 6070216 -221454362 + AluJb SINE Alu 3 254 -58 1682 264 64 38 chr3 6070439 6071076 -221453502 - MER76 LTR ERV -34 654 1 323 289 29 0 chr3 6072662 6072766 -221451812 - MIR SINE MIR 0 262 156 770 210 59 0 chr3 6073135 6073321 -221451257 - MER3 DNA MER1_type -12 197 1 619 322 58 37 chr3 6073426 6073667 -221450911 - MIR SINE MIR 0 262 18 22 0 0 0 chr3 6073771 6073793 -221450785 + AT_rich Low_complexity Low_complexity 1 22 0 727 240 84 51 chr3 6073805 6074101 -221450477 - MER21B LTR ERV1 -150 713 408 670 196 37 0 chr3 6074129 6074292 -221450286 - MER3 DNA MER1_type -87 122 1 651 264 94 58 chr3 6074473 6074833 -221449745 - MER21B LTR ERV1 -485 378 6 200 241 17 0 chr3 6074884 6074942 -221449636 + (TA)n Simple_repeat Simple_repeat 1 59 0 434 317 72 24 chr3 6074963 6075130 -221449448 - MIR3 SINE MIR -11 197 23 219 286 50 101 chr3 6075176 6075414 -221449164 + L2 LINE L2 2832 3057 -215 772 304 206 19 chr3 6075525 6075986 -221448592 + L2 LINE L2 2305 2851 -463 683 286 161 23 chr3 6076199 6076541 -221448037 + L2 LINE L2 2925 3313 0 297 301 150 0 chr3 6076546 6076659 -221447919 + L2 LINE L2 3137 3266 -6 257 178 0 0 chr3 6076689 6076734 -221447844 + MIR SINE MIR 81 125 -137 274 167 61 0 chr3 6078371 6078437 -221446141 - MER116 DNA Mariner -10 70 1 884 266 40 4 chr3 6078546 6078772 -221445806 - MIR SINE MIR -27 235 2 877 123 7 32 chr3 6078903 6079057 -221445521 + L1MC1 LINE L1 5979 6128 -205 1058 89 0 7 chr3 6079061 6079196 -221445382 + AluSc SINE Alu 155 288 -21 1220 130 28 14 chr3 6079196 6079411 -221445167 + L1MC1 LINE L1 6116 6333 0 391 279 131 25 chr3 6079820 6079942 -221444636 - L2 LINE L2 -1 3271 3137 1775 179 3 0 chr3 6079995 6080292 -221444286 - AluJo SINE Alu -14 298 1 2161 114 7 3 chr3 6082430 6082728 -221441850 + AluSx SINE Alu 1 299 -13 614 230 14 7 chr3 6083008 6083156 -221441422 + AluSc SINE Alu 132 280 -29 2144 152 0 0 chr3 6083338 6083648 -221440930 - AluSx SINE Alu 0 312 3 1553 160 4 30 chr3 6083659 6083928 -221440650 - AluSx SINE Alu -2 310 49 190 196 179 0 chr3 6084935 6084991 -221439587 + MIR SINE MIR 118 183 -79 240 87 43 58 chr3 6085384 6085453 -221439125 + (TATAA)n Simple_repeat Simple_repeat 3 70 0 626 290 127 35 chr3 6085717 6086031 -221438547 - MER115 DNA AcHobo -1 692 350 682 301 30 15 chr3 6086166 6086365 -221438213 - MIR3 SINE MIR -3 205 4 1090 184 0 0 chr3 6086949 6087123 -221437455 - AluJb SINE Alu -8 304 131 333 0 0 0 chr3 6087123 6087160 -221437418 + (TG)n Simple_repeat Simple_repeat 2 38 0 35346 91 8 7 chr3 6087160 6093285 -221431293 - L1PA6 LINE L1 -22 6132 1 727 153 0 58 chr3 6093292 6093429 -221431149 - AluSq/x SINE Alu -184 129 1 2482 76 0 0 chr3 6093466 6093769 -221430809 - AluY SINE Alu -8 303 1 5414 67 3 0 chr3 6093835 6094557 -221430021 - L1PA7 LINE L1 -32 6122 5399 3972 98 12 33 chr3 6094557 6095232 -221429346 + L1PA7 LINE L1 4728 5388 -758 742 234 6 12 chr3 6095236 6095403 -221429175 + MIR SINE MIR 74 239 -23 334 390 45 35 chr3 6095474 6095877 -221428701 + L2 LINE L2 2323 2729 -585 24 0 0 0 chr3 6096306 6096330 -221428248 + AT_rich Low_complexity Low_complexity 1 24 0 1103 201 20 24 chr3 6097019 6097312 -221427266 - L1M4 LINE L1 -1168 4978 4687 414 286 118 12 chr3 6097406 6097567 -221427011 - MER5B DNA MER1_type 0 178 1 1040 214 27 18 chr3 6097589 6097809 -221426769 - MER58A DNA MER1_type -1 223 2 1466 202 106 32 chr3 6098185 6098620 -221425958 - MLT1C LTR MaLR 0 467 1 596 286 94 5 chr3 6098996 6099209 -221425369 - MIR SINE MIR -5 257 26 1133 104 15 157 chr3 6100155 6100458 -221424120 + LTR12 LTR ERV1 1 1982 -456 337 75 0 0 chr3 6100519 6100572 -221424006 + LTR12 LTR ERV1 233 285 -429 335 194 0 0 chr3 6100573 6100645 -221423933 + LTR30 LTR ERV1 553 624 -98 710 142 64 79 chr3 6100645 6100809 -221423769 + LTR12 LTR ERV1 301 483 -231 * 17436 118 16 11 chr3 6100785 6103831 -221420747 + HERV9 LTR ERV1 55 3122 -5277 432 303 70 7 chr3 6104084 6104226 -221420352 + MIR3 SINE MIR 4 154 -54 2922 3 0 0 chr3 6104367 6104678 -221419900 - AluYa5 SINE Alu 0 311 1 471 155 0 0 chr3 6104720 6104804 -221419774 + CT-rich Low_complexity Low_complexity 3 86 0 23349 127 21 8 chr3 6105236 6107644 -221416934 + L1M1 LINE L1 13 2483 -5082 1935 128 0 0 chr3 6107644 6107901 -221416677 + AluSx SINE Alu 45 301 -11 23349 127 21 8 chr3 6107901 6108978 -221415600 + L1M1 LINE L1 2483 3544 -4021 1131 113 38 0 chr3 6108973 6109159 -221415419 + L1M1 LINE L1 3035 3227 -4338 * 3369 186 13 55 chr3 6109132 6109903 -221414675 + L1M1 LINE L1 3538 4276 -3289 278 303 34 84 chr3 6109949 6110068 -221414510 + L2 LINE L2 3134 3246 -26 22 35 0 0 chr3 6111284 6111313 -221413265 + AT_rich Low_complexity Low_complexity 1 29 0 372 301 24 0 chr3 6111661 6111744 -221412834 - L2 LINE L2 -38 3275 3191 284 295 78 66 chr3 6111808 6111974 -221412604 + MIR3 SINE MIR 19 186 -22 262 282 14 0 chr3 6112153 6112224 -221412354 - MLT1K LTR MaLR -349 239 168 492 280 126 6 chr3 6112390 6112565 -221412013 - LTR67 LTR ERVL -9 548 353 220 156 0 22 chr3 6113429 6113474 -221411104 + L2 LINE L2 3270 3313 0 637 301 59 35 chr3 6113476 6113719 -221410859 + MIR SINE MIR 3 258 -4 302 317 49 28 chr3 6113916 6114058 -221410520 + L2 LINE L2 2932 3076 -196 34 24 0 0 chr3 6114282 6114323 -221410255 + AT_rich Low_complexity Low_complexity 1 41 0 1676 193 7 16 chr3 6114625 6114931 -221409647 + AluJo SINE Alu 1 303 -9 369 78 0 0 chr3 6114983 6115034 -221409544 - L1MA8 LINE L1 -25 6266 6216 1651 177 0 16 chr3 6115548 6115858 -221408720 + AluJb SINE Alu 1 305 -7 1620 117 36 0 chr3 6116314 6116536 -221408042 - MER30 DNA MER1_type 0 230 1 297 0 0 0 chr3 6116540 6116551 -221408027 + (TG)n Simple_repeat Simple_repeat 1 44 0 297 0 0 0 chr3 6116551 6116584 -221407994 + (TG)n Simple_repeat Simple_repeat 2 34 0 321 311 0 0 chr3 6116614 6116704 -221407874 - L1MC4 LINE L1 -1339 6703 6614 273 269 99 14 chr3 6116710 6116851 -221407727 + L1MC4 LINE L1 6614 6766 -1276 340 276 16 0 chr3 6116851 6116974 -221407604 + (TA)n Simple_repeat Simple_repeat 1 125 0 1552 165 16 41 chr3 6117452 6117574 -221407004 + AluJo SINE Alu 1 125 -187 1891 120 49 7 chr3 6117574 6117858 -221406720 - AluSq SINE Alu -17 296 1 1552 165 16 41 chr3 6117858 6118051 -221406527 + AluJo SINE Alu 125 308 -4 247 300 65 47 chr3 6118527 6118697 -221405881 + L3 LINE CR1 1346 1518 -59 778 294 23 23 chr3 6119373 6119594 -221404984 + MER58A DNA MER1_type 4 224 0 193 289 26 53 chr3 6120634 6120710 -221403868 + MIR3 SINE MIR 103 176 -32 3809 9 12 5 chr3 6120727 6121158 -221403420 - L1PA4 LINE L1 -420 5735 5302 3905 40 0 0 chr3 6121158 6121602 -221402976 + L1PA4 LINE L1 5711 6155 0 245 314 95 0 chr3 6122576 6122745 -221401833 + L3 LINE CR1 1231 1415 -162 308 250 25 12 chr3 6122794 6122874 -221401704 - L2 LINE L2 0 3313 3233 2333 78 20 0 chr3 6122924 6123220 -221401358 - AluY SINE Alu -9 302 1 1624 160 87 3 chr3 6123871 6124158 -221400420 + AluJb SINE Alu 1 311 -1 383 312 153 0 chr3 6124195 6124352 -221400226 - MER5A DNA MER1_type 0 189 9 289 213 277 32 chr3 6124350 6124505 -221400073 + MIR3 SINE MIR 16 208 0 * 220 319 92 17 chr3 6125631 6125750 -221398828 - L2 LINE L2 -1 3271 3144 195 265 0 20 chr3 6126028 6126077 -221398501 + MER5B DNA MER1_type 2 49 -129 257 0 30 0 chr3 6126435 6126468 -221398110 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 869 183 0 0 chr3 6126472 6126609 -221397969 - FRAM SINE Alu -27 149 13 26 0 0 0 chr3 6127399 6127425 -221397153 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 6127547 6127568 -221397010 + AT_rich Low_complexity Low_complexity 1 21 0 241 117 83 83 chr3 6128485 6128545 -221396033 + MER63C DNA MER1_type 1 60 -870 3141 191 42 13 chr3 6128928 6129565 -221395013 + MER63C DNA MER1_type 68 723 -207 1465 256 43 104 chr3 6129585 6130164 -221394414 - MER77 LTR ERV1 -4 601 58 2489 216 43 13 chr3 6130190 6130815 -221393763 - L1M4 LINE L1 -1541 4605 3962 24542 41 2 2 chr3 6130815 6134446 -221390132 - L1PA5 LINE L1 0 6154 2524 657 232 21 0 chr3 6134447 6134589 -221389989 - ERVL LTR ERVL -5072 692 548 3607 83 0 7 chr3 6134589 6135036 -221389542 - MLT2A1 LTR ERVL 0 444 1 43708 82 5 9 chr3 6135036 6140714 -221383864 - HERVL-A1 LTR ERVL 0 5654 1 3601 89 0 11 chr3 6140714 6141163 -221383415 - MLT2A1 LTR ERVL 0 444 1 257 326 11 0 chr3 6141163 6141255 -221383323 - ERVL LTR ERVL -5123 531 439 254 260 177 21 chr3 6141293 6141485 -221383093 - L1MC4 LINE L1 -962 7080 6859 511 301 103 66 chr3 6142415 6142478 -221382100 + L3 LINE CR1 278 337 -1240 1647 205 0 7 chr3 6142478 6142776 -221381802 + AluJb SINE Alu 1 296 -16 511 301 103 66 chr3 6142776 6143031 -221381547 + L3 LINE CR1 337 608 -969 1103 182 35 5 chr3 6143095 6143298 -221381280 + MER3 DNA MER1_type 1 209 0 199 359 60 17 chr3 6143421 6143538 -221381040 - MIR SINE MIR -68 140 19 410 328 23 45 chr3 6144647 6144824 -221379754 - MIR3 SINE MIR -35 173 1 429 310 117 29 chr3 6145213 6145494 -221379084 + L2 LINE L2 3008 3313 0 1765 172 6 19 chr3 6145871 6146185 -221378393 - L1MB5 LINE L1 0 6174 5865 1069 154 22 66 chr3 6146189 6146288 -221378290 - L1MB5 LINE L1 -368 5806 5704 3257 100 22 2 chr3 6146288 6146736 -221377842 + L1PA13 LINE L1 5703 6163 0 1069 154 22 66 chr3 6146736 6146863 -221377715 - L1MB5 LINE L1 -470 5704 5590 211 329 12 12 chr3 6147123 6147205 -221377373 + MIR SINE MIR 59 140 -122 326 306 36 0 chr3 6147249 6147360 -221377218 - MIR3 SINE MIR -9 199 85 289 356 10 10 chr3 6147527 6147631 -221376947 - MIR SINE MIR -112 150 47 401 357 51 13 chr3 6148141 6148298 -221376280 - L2 LINE L2 -6 3266 3104 306 50 0 0 chr3 6148716 6148756 -221375822 + (TG)n Simple_repeat Simple_repeat 1 40 0 378 293 110 12 chr3 6148857 6149021 -221375557 - L2 LINE L2 -227 3045 2866 347 326 214 29 chr3 6149302 6149887 -221374691 - L2 LINE L2 -838 2476 1784 290 235 12 47 chr3 6149900 6149985 -221374593 - HAL1 LINE L1 -6 2501 2420 * 524 236 88 27 chr3 6149974 6150237 -221374341 - HAL1 LINE L1 -1254 1253 975 216 276 169 34 chr3 6150716 6150924 -221373654 - MIR SINE MIR -11 251 9 22 0 0 0 chr3 6151257 6151279 -221373299 + AT_rich Low_complexity Low_complexity 1 22 0 446 259 60 55 chr3 6152199 6152400 -221372178 + MIR SINE MIR 14 215 -47 3705 166 78 46 chr3 6152794 6153553 -221371025 - LTR1 LTR ERV1 -2 783 1 1312 77 4 170 chr3 6154841 6154929 -221369649 + L1MA4A LINE L1 6067 6168 -135 1540 186 18 7 chr3 6154929 6155204 -221369374 - AluJo SINE Alu -32 280 3 1312 77 4 170 chr3 6155204 6155374 -221369204 + L1MA4A LINE L1 6168 6282 -21 375 249 16 124 chr3 6156595 6156701 -221367877 + MER112 DNA MER1_type 1 78 -182 2046 88 0 76 chr3 6156701 6157018 -221367560 - AluSc SINE Alu -16 293 1 375 249 16 124 chr3 6157018 6157104 -221367474 + MER112 DNA MER1_type 78 172 -88 1285 194 8 25 chr3 6157109 6157346 -221367232 - MER8 DNA MER2_type 0 239 7 5556 32 0 2 chr3 6157449 6158064 -221366514 - L1PA5 LINE L1 0 6154 5541 18850 44 2 0 chr3 6158064 6160347 -221364231 + L1P LINE L1 683 2968 -3178 259 132 0 0 chr3 6160357 6160395 -221364183 + MER112 DNA MER1_type 223 260 0 618 250 0 15 chr3 6160665 6160797 -221363781 - FRAM SINE Alu -55 121 1 230 319 11 85 chr3 6160945 6161039 -221363539 + MIR3 SINE MIR 12 98 -110 307 317 178 26 chr3 6162284 6162514 -221362064 + L1MC4a LINE L1 5616 5880 -1928 2971 141 16 22 chr3 6163101 6163611 -221360967 - L1MA7 LINE L1 -172 6119 5613 270 56 0 0 chr3 6163755 6163791 -221360787 + (GA)n Simple_repeat Simple_repeat 1 36 0 527 250 75 42 chr3 6163854 6164041 -221360537 - LTR33 LTR ERVL -300 221 25 2169 142 44 33 chr3 6164041 6164401 -221360177 - THE1B LTR MaLR 0 364 1 527 250 75 42 chr3 6164401 6164425 -221360153 - LTR33 LTR ERVL -496 25 3 365 294 106 11 chr3 6164621 6164801 -221359777 + MIR SINE MIR 66 262 0 2274 116 0 7 chr3 6165235 6165538 -221359040 + AluSx SINE Alu 1 301 -11 186 137 68 14 chr3 6165570 6165643 -221358935 + CT-rich Low_complexity Low_complexity 2 78 0 224 344 47 0 chr3 6165722 6165786 -221358792 - L2 LINE L2 -92 3180 3114 2392 119 43 27 chr3 6166280 6166649 -221357929 + THE1C LTR MaLR 1 375 0 7818 158 33 43 chr3 6166749 6169196 -221355382 - L1MA6 LINE L1 -86 6214 3791 2345 90 0 7 chr3 6170879 6171189 -221353389 - AluSx SINE Alu -4 308 1 573 305 145 15 chr3 6171458 6171720 -221352858 + MER102b DNA MER1_type 43 338 -3 234 212 67 30 chr3 6173137 6173302 -221351276 + (CAAA)n Simple_repeat Simple_repeat 3 173 0 617 196 96 60 chr3 6173452 6173651 -221350927 - L1M4 LINE L1 -4871 1671 1466 1693 176 3 28 chr3 6173657 6173975 -221350603 - AluJo SINE Alu -2 310 1 198 0 0 0 chr3 6173976 6173998 -221350580 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 22 0 0 0 chr3 6173998 6174020 -221350558 + AT_rich Low_complexity Low_complexity 1 22 0 483 184 11 152 chr3 6174301 6174514 -221350064 + L1MC5 LINE L1 7545 7712 -249 1731 164 45 3 chr3 6174514 6174800 -221349778 - AluJb SINE Alu -14 298 1 483 184 11 152 chr3 6174800 6174863 -221349715 + L1MC5 LINE L1 7712 7782 -179 829 223 13 12 chr3 6174906 6175208 -221349370 + MLT2F LTR ERVL 8 376 -287 560 273 0 27 chr3 6175385 6175535 -221349043 - MIR SINE MIR -64 198 53 421 217 22 0 chr3 6176337 6176429 -221348149 + MER94 DNA DNA 10 103 -31 483 282 25 0 chr3 6176441 6176582 -221347996 - MIR SINE MIR -62 146 2 872 269 49 4 chr3 6178233 6178478 -221346100 - MIR SINE MIR -4 258 3 266 304 128 20 chr3 6178561 6178663 -221345915 + L2 LINE L2 3155 3267 -5 24 0 0 0 chr3 6178971 6178995 -221345583 + AT_rich Low_complexity Low_complexity 1 24 0 1925 140 61 3 chr3 6180088 6180381 -221344197 - AluSg SINE Alu 0 310 1 375 282 172 6 chr3 6180971 6181145 -221343433 - MIR SINE MIR -12 250 48 5216 56 0 2 chr3 6181160 6181768 -221342810 - L1PA6 LINE L1 -3 6151 5545 238 339 85 23 chr3 6181920 6182050 -221342528 - MIR3 SINE MIR -69 139 2 200 303 100 74 chr3 6182629 6182900 -221341678 + L2 LINE L2 2985 3262 -10 496 290 129 28 chr3 6182904 6183152 -221341426 + L3 LINE CR1 605 877 -700 236 315 65 0 chr3 6183210 6183318 -221341260 + L3 LINE CR1 842 956 -621 552 283 46 32 chr3 6183428 6183647 -221340931 - MIR SINE MIR -27 235 14 817 329 62 48 chr3 6183683 6184185 -221340393 + L3 LINE CR1 1019 1527 -50 1996 98 4 25 chr3 6184827 6185123 -221339455 + AluSp SINE Alu 21 310 0 194 227 0 23 chr3 6185178 6185222 -221339356 + L2 LINE L2 3262 3304 -9 1966 156 0 3 chr3 6185716 6186018 -221338560 - AluJb SINE Alu -10 302 2 2135 127 0 13 chr3 6186705 6187020 -221337558 + AluSx SINE Alu 1 311 -1 234 0 0 0 chr3 6187417 6187443 -221337135 + (CA)n Simple_repeat Simple_repeat 2 27 0 393 282 87 28 chr3 6188298 6188550 -221336028 + L1MCc LINE L1 1177 1443 -4980 225 333 0 0 chr3 6188560 6188641 -221335937 + L1MC/D LINE L1 5428 5508 -734 832 176 0 0 chr3 6188875 6189006 -221335572 + FLAM_C SINE Alu 1 131 -12 2043 110 36 7 chr3 6189018 6189319 -221335259 + AluSx SINE Alu 1 310 -2 492 310 123 0 chr3 6189349 6189536 -221335042 - L2 LINE L2 -541 2773 2564 21 57 0 0 chr3 6192149 6192184 -221332394 + AT_rich Low_complexity Low_complexity 1 35 0 1707 174 3 20 chr3 6192931 6193230 -221331348 + AluSx SINE Alu 1 294 -18 1980 125 59 0 chr3 6193849 6194136 -221330442 + AluSx SINE Alu 1 304 -8 230 132 26 0 chr3 6194145 6194183 -221330395 + MLT1B LTR MaLR 352 390 0 2855 141 7 16 chr3 6194425 6194865 -221329713 + L1PA15 LINE L1 5728 6163 -2 2378 84 7 0 chr3 6195456 6195765 -221328813 + L1PB1 LINE L1 5841 6151 0 606 230 57 63 chr3 6195881 6196033 -221328545 + L1MC5 LINE L1 7027 7178 -801 1839 150 0 14 chr3 6196033 6196320 -221328258 + AluJb SINE Alu 1 283 -29 183 42 0 0 chr3 6196323 6196347 -221328231 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 606 230 57 63 chr3 6196347 6196417 -221328161 + L1MC5 LINE L1 7180 7251 -728 285 98 0 0 chr3 6196586 6196627 -221327951 + (CA)n Simple_repeat Simple_repeat 2 42 0 431 218 44 118 chr3 6196636 6196777 -221327801 + L1MC5 LINE L1 7310 7460 -501 4795 68 0 3 chr3 6196777 6197355 -221327223 + L1PA7 LINE L1 5579 6154 0 431 218 44 118 chr3 6197355 6197366 -221327212 + L1MC5 LINE L1 7460 7470 -491 2227 129 0 0 chr3 6197366 6197677 -221326901 + AluSx SINE Alu 1 311 -1 431 218 44 118 chr3 6197677 6197752 -221326826 + L1MC5 LINE L1 7470 7521 -440 1520 213 216 17 chr3 6197780 6198188 -221326390 + LTR40a LTR ERVL 31 519 0 336 254 71 61 chr3 6198226 6198521 -221326057 - L1MCa LINE L1 -4387 2039 1742 * 5045 189 45 19 chr3 6198517 6199144 -221325434 - L1MD1 LINE L1 -1 6241 5632 2122 125 0 3 chr3 6199144 6199455 -221325123 - AluSx SINE Alu -2 310 1 5045 189 45 19 chr3 6199455 6200732 -221323846 - L1MD1 LINE L1 -610 5632 4288 2267 96 0 10 chr3 6202432 6202733 -221321845 + AluSg SINE Alu 1 298 -12 261 98 0 0 chr3 6209323 6209364 -221315214 + (TG)n Simple_repeat Simple_repeat 2 42 0 25 31 0 0 chr3 6209412 6209444 -221315134 + AT_rich Low_complexity Low_complexity 1 32 0 241 366 41 8 chr3 6210164 6210287 -221314291 - L2 LINE L2 -4 3268 3142 459 246 16 96 chr3 6210930 6211117 -221313461 + MIR SINE MIR 37 208 -54 1297 135 5 0 chr3 6212407 6212599 -221311979 - AluSg/x SINE Alu -6 306 114 629 201 14 21 chr3 6213860 6214004 -221310574 + Tigger3(Golem) DNA MER2_type 2886 3028 -1 1002 151 25 0 chr3 6214400 6214559 -221310019 + AluSg/x SINE Alu 120 282 -28 429 20 0 0 chr3 6214559 6214609 -221309969 + (CA)n Simple_repeat Simple_repeat 2 51 0 1538 156 101 0 chr3 6215083 6215397 -221309181 + MER2 DNA MER2_type 1 345 0 612 162 40 23 chr3 6221961 6222270 -221302308 + (TTAGGG)n Simple_repeat Simple_repeat 1 314 0 199 250 135 0 chr3 6222580 6222632 -221301946 + MIR SINE MIR 86 144 -118 2114 151 41 17 chr3 6223461 6223877 -221300701 - MSTB1 LTR MaLR -6 426 1 275 280 70 32 chr3 6224505 6224662 -221299916 - L1MC5 LINE L1 -91 7870 7708 2128 113 16 13 chr3 6225447 6225757 -221298821 + AluSx SINE Alu 2 312 0 216 323 0 15 chr3 6226176 6226241 -221298337 + MIR SINE MIR 186 249 -13 2410 97 0 0 chr3 6228409 6228719 -221295859 + AluSg SINE Alu 1 310 0 1299 185 37 54 chr3 6229257 6229555 -221295023 + AluJo SINE Alu 1 293 -19 271 315 61 42 chr3 6229764 6229929 -221294649 - L2 LINE L2 -17 3296 3129 253 244 0 13 chr3 6231065 6231143 -221293435 - MLT1B LTR MaLR -234 156 80 1907 120 0 7 chr3 6232365 6232639 -221291939 - AluSx SINE Alu -40 272 1 2370 113 49 0 chr3 6239413 6239759 -221284819 + THE1B LTR MaLR 2 364 0 565 99 0 55 chr3 6242346 6242437 -221282141 - AluSg/x SINE Alu -16 294 209 409 301 90 48 chr3 6242713 6243090 -221281488 + L1ME LINE L1 5259 5662 -459 2266 103 3 23 chr3 6243090 6243400 -221281178 + AluSx SINE Alu 3 306 -6 409 301 90 48 chr3 6243400 6243500 -221281078 + L1ME LINE L1 5662 5756 -365 363 303 113 33 chr3 6244292 6244479 -221280099 + MIR3 SINE MIR 2 203 -5 504 296 87 24 chr3 6246788 6246994 -221277584 - MIR SINE MIR 0 262 44 2165 119 6 16 chr3 6248363 6248536 -221276042 - AluSx SINE Alu -4 308 138 1932 124 72 0 chr3 6248536 6248707 -221275871 - AluSq SINE Alu -2 311 109 188 35 35 0 chr3 6248707 6248736 -221275842 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1932 124 72 0 chr3 6248736 6248854 -221275724 - AluSq SINE Alu -204 109 1 2165 119 6 16 chr3 6248854 6248991 -221275587 - AluSx SINE Alu -174 138 1 420 293 40 59 chr3 6248991 6249313 -221275265 - L1MCa LINE L1 -3863 2563 2242 520 271 50 14 chr3 6251584 6251768 -221272810 - MIR SINE MIR -6 256 68 191 253 36 96 chr3 6253374 6253457 -221271121 - L2 LINE L2 -2 3311 3234 438 220 47 27 chr3 6253996 6254146 -221270432 + CT-rich Low_complexity Low_complexity 5 157 0 905 83 61 8 chr3 6255983 6256115 -221268463 + MER85 DNA T2_type 1 139 0 922 76 8 23 chr3 6257209 6257341 -221267237 + AluY SINE Alu 56 185 -126 272 342 9 0 chr3 6257851 6257965 -221266613 + MIR3 SINE MIR 85 199 -9 21 0 0 0 chr3 6258732 6258753 -221265825 + GC_rich Low_complexity Low_complexity 1 21 0 505 231 12 0 chr3 6260646 6260819 -221263759 + (CAT)n Simple_repeat Simple_repeat 3 177 0 729 213 4 0 chr3 6260845 6261086 -221263492 + (CAT)n Simple_repeat Simple_repeat 1 242 0 33 0 0 0 chr3 6261737 6261770 -221262808 + AT_rich Low_complexity Low_complexity 1 33 0 584 203 8 17 chr3 6262930 6263048 -221261530 - FLAM_A SINE Alu -15 118 2 2121 111 4 0 chr3 6263193 6263509 -221261069 + AluSx SINE Alu 1 317 0 226 441 31 31 chr3 6263967 6264094 -221260484 + polypurine Low_complexity Low_complexity 5 131 0 403 138 25 25 chr3 6266855 6266935 -221257643 - AluS SINE Alu -223 80 1 332 43 22 0 chr3 6269278 6269324 -221255254 + (TAA)n Simple_repeat Simple_repeat 1 47 0 258 56 0 0 chr3 6269362 6269398 -221255180 + (TG)n Simple_repeat Simple_repeat 2 37 0 430 339 20 8 chr3 6271106 6271465 -221253113 + (TGGG)n Simple_repeat Simple_repeat 1 363 0 250 341 8 8 chr3 6271439 6271571 -221253007 + G-rich Low_complexity Low_complexity 5 136 0 * 652 204 97 62 chr3 6273037 6273213 -221251365 + AluJo SINE Alu 2 183 -129 2190 113 0 0 chr3 6274274 6274556 -221250022 - AluSq SINE Alu -31 282 1 16860 32 3 0 chr3 6275414 6277398 -221247180 - L1PA2 LINE L1 -848 5298 3309 7138 30 0 0 chr3 6277398 6278241 -221246337 + L1PA2 LINE L1 5322 6167 0 23 33 0 0 chr3 6278694 6278724 -221245854 + AT_rich Low_complexity Low_complexity 1 30 0 395 265 58 85 chr3 6279246 6279469 -221245109 - Charlie8 DNA MER1_type -2196 221 5 998 137 0 0 chr3 6279559 6279705 -221244873 + AluSg/x SINE Alu 155 300 -12 1053 195 91 0 chr3 6279794 6280015 -221244563 + MLT1D LTR MaLR 264 504 -1 1316 242 104 41 chr3 6281390 6281878 -221242700 - MLT1K LTR MaLR -58 530 12 2238 107 3 13 chr3 6283804 6284114 -221240464 + AluSx SINE Alu 1 307 -5 16860 32 3 0 chr3 6284536 6286520 -221238058 - L1PA8 LINE L1 -848 5298 3309 5901 95 0 34 chr3 6286520 6287398 -221237180 + L1PA8 LINE L1 5322 6172 0 195 42 0 0 chr3 6287445 6287469 -221237109 + (T)n Simple_repeat Simple_repeat 1 24 0 201 404 43 14 chr3 6287599 6287740 -221236838 - MIR3 SINE MIR -58 150 6 186 43 0 0 chr3 6287828 6287851 -221236727 + (TG)n Simple_repeat Simple_repeat 2 24 0 1109 41 75 0 chr3 6288129 6288276 -221236302 - L1PA4 LINE L1 -6 6149 5992 360 315 20 27 chr3 6288912 6289061 -221235517 - MIR SINE MIR -27 235 88 205 204 23 0 chr3 6289289 6289333 -221235245 + CT-rich Low_complexity Low_complexity 5 49 0 274 44 22 22 chr3 6289333 6289378 -221235200 + (TC)n Simple_repeat Simple_repeat 2 46 0 183 80 0 0 chr3 6289378 6289403 -221235175 + (CA)n Simple_repeat Simple_repeat 1 25 0 238 339 110 9 chr3 6290253 6290362 -221234216 + MIR3 SINE MIR 86 205 -3 423 0 0 0 chr3 6290418 6290465 -221234113 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 1515 159 12 12 chr3 6290482 6290733 -221233845 - AluJo SINE Alu -49 263 13 940 313 57 32 chr3 6291161 6291567 -221233011 - LTR16A LTR ERVL -34 416 1 355 155 84 28 chr3 6291664 6291735 -221232843 + L1MB7 LINE L1 5546 5620 -554 1491 183 59 7 chr3 6291735 6292008 -221232570 + AluJo SINE Alu 1 287 -25 369 162 0 0 chr3 6292008 6292076 -221232502 + (TA)n Simple_repeat Simple_repeat 1 68 0 2212 214 59 6 chr3 6292076 6292618 -221231960 + L1MB7 LINE L1 5600 6170 -14 622 176 16 0 chr3 6292626 6292937 -221231641 + G-rich Low_complexity Low_complexity 1 316 0 180 0 0 0 chr3 6293202 6293222 -221231356 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 256 324 124 0 chr3 6293463 6293608 -221230970 - MIR SINE MIR -14 248 86 332 322 91 15 chr3 6293924 6294123 -221230455 - LTR16A LTR ERVL -5 445 232 782 291 76 64 chr3 6294450 6294872 -221229706 - MLT1L LTR MaLR -188 427 1 191 299 15 15 chr3 6296242 6296309 -221228269 - MER5B DNA MER1_type -111 67 1 21 36 0 0 chr3 6296434 6296462 -221228116 + AT_rich Low_complexity Low_complexity 1 28 0 206 139 28 0 chr3 6296993 6297029 -221227549 + (CAT)n Simple_repeat Simple_repeat 2 38 0 476 215 38 51 chr3 6298056 6298214 -221226364 + MER5C DNA MER1_type 169 324 0 423 283 72 17 chr3 6298454 6298634 -221225944 + L1MC4a LINE L1 5710 5899 -1909 828 132 60 18 chr3 6299148 6299315 -221225263 + L1MA8 LINE L1 6113 6286 -5 1695 173 125 48 chr3 6299677 6299908 -221224670 - MLT1C LTR MaLR -1 466 254 360 0 0 0 chr3 6299908 6299948 -221224630 + (TG)n Simple_repeat Simple_repeat 2 41 0 1695 173 125 48 chr3 6299948 6300149 -221224429 - MLT1C LTR MaLR -213 254 1 214 351 9 27 chr3 6300292 6300403 -221224175 - L2 LINE L2 -613 2701 2593 416 264 88 0 chr3 6300501 6300626 -221223952 - MIR SINE MIR -66 196 61 2044 188 14 3 chr3 6302784 6303145 -221221433 - MLT1A1 LTR MaLR 0 365 1 1653 191 13 3 chr3 6303208 6303512 -221221066 + AluJb SINE Alu 1 307 -5 327 49 0 0 chr3 6303516 6303557 -221221021 + (GGA)n Simple_repeat Simple_repeat 3 43 0 260 231 132 25 chr3 6304433 6304554 -221220024 + L1ME4a LINE L1 5986 6119 -2 21 36 0 0 chr3 6304955 6304983 -221219595 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr3 6305280 6305314 -221219264 + AT_rich Low_complexity Low_complexity 1 34 0 929 172 84 0 chr3 6305998 6306201 -221218377 + Charlie1 DNA MER1_type 6 225 -2536 510 200 16 8 chr3 6306209 6306334 -221218244 + Charlie1 DNA MER1_type 2632 2757 -4 1795 203 120 0 chr3 6306404 6306822 -221217756 - MER119 DNA MER1_type -110 473 6 1802 111 0 24 chr3 6307630 6307883 -221216695 + AluSg SINE Alu 48 294 -16 297 262 171 37 chr3 6308388 6308552 -221216026 - MIR SINE MIR -70 192 7 190 253 191 43 chr3 6308637 6308799 -221215779 - L3b LINE CR1 -110 1473 1288 214 291 36 0 chr3 6308849 6308904 -221215674 + L2 LINE L2 3251 3307 -6 274 270 54 0 chr3 6309858 6309932 -221214646 - MER63 DNA MER1_type -5 1057 980 266 214 0 0 chr3 6309934 6309990 -221214588 - MER63 DNA MER1_type -311 750 695 334 303 40 59 chr3 6310037 6310189 -221214389 + MIR SINE MIR 104 252 -10 202 268 0 62 chr3 6310428 6310525 -221214053 + CT-rich Low_complexity Low_complexity 2 92 0 389 341 28 22 chr3 6313061 6313240 -221211338 + MIR SINE MIR 47 226 -36 453 216 20 0 chr3 6313254 6313356 -221211222 - MER3 DNA MER1_type -25 184 81 1273 181 3 100 chr3 6313357 6313677 -221210901 + AluJb SINE Alu 12 300 -12 2573 79 31 8 chr3 6315448 6315804 -221208774 - THE1B LTR MaLR 0 364 1 1250 212 24 44 chr3 6316478 6316775 -221207803 - AluJo SINE Alu -21 291 1 280 189 42 95 chr3 6318542 6318593 -221205985 + MIR SINE MIR 173 218 -44 1985 161 0 3 chr3 6318593 6318897 -221205681 + AluSx SINE Alu 1 303 -9 280 189 42 95 chr3 6318897 6318940 -221205638 + MIR SINE MIR 218 262 0 198 370 0 14 chr3 6318940 6319013 -221205565 - MIR SINE MIR -174 88 17 2304 157 0 42 chr3 6319055 6319489 -221205089 + MSTA LTR MaLR 1 416 -12 24 0 0 0 chr3 6320077 6320101 -221204477 + AT_rich Low_complexity Low_complexity 1 24 0 332 357 134 34 chr3 6320272 6321166 -221203412 - L2 LINE L2 -338 2976 1958 3598 117 43 23 chr3 6321166 6321764 -221202814 - MER4B LTR ERV1 0 610 1 332 357 134 34 chr3 6321764 6321926 -221202652 - L2 LINE L2 -1356 1958 1814 27 29 0 0 chr3 6322553 6322587 -221201991 + GC_rich Low_complexity Low_complexity 1 34 0 24 53 0 0 chr3 6322596 6322634 -221201944 + GC_rich Low_complexity Low_complexity 1 38 0 2377 55 7 0 chr3 6323218 6323510 -221201068 - AluSp SINE Alu -19 294 1 271 258 15 0 chr3 6323627 6323693 -221200885 + MIR SINE MIR 87 153 -109 4412 109 24 46 chr3 6323815 6324166 -221200412 - MER4E LTR ERV1 0 766 409 2142 118 7 0 chr3 6324166 6324455 -221200123 - AluSx SINE Alu -21 291 1 4412 109 24 46 chr3 6324455 6324886 -221199692 - MER4E LTR ERV1 -357 409 1 362 252 63 9 chr3 6325068 6325179 -221199399 - L2 LINE L2 0 3313 3197 28 0 0 0 chr3 6325345 6325373 -221199205 + AT_rich Low_complexity Low_complexity 1 28 0 1428 155 78 42 chr3 6326824 6327108 -221197470 + AluJo SINE Alu 1 294 -18 183 382 0 0 chr3 6327310 6327365 -221197213 - MIR SINE MIR -204 58 4 229 314 117 22 chr3 6327591 6327728 -221196850 - MIR SINE MIR -58 204 55 2704 125 82 31 chr3 6327894 6328479 -221196099 - MER4B LTR ERV1 0 779 1 627 257 82 44 chr3 6328530 6328849 -221195729 - MLT1K LTR MaLR 0 588 258 1617 165 43 25 chr3 6328937 6329264 -221195314 - MER7A DNA MER2_type -14 332 2 892 175 56 12 chr3 6331631 6331791 -221192787 + AluJb SINE Alu 134 300 -12 1136 230 143 31 chr3 6332931 6333379 -221191199 + MLT1J LTR MaLR 1 498 -13 372 121 0 0 chr3 6334030 6334088 -221190490 + L1MB8 LINE L1 6113 6170 -8 22 70 0 0 chr3 6334786 6334829 -221189749 + AT_rich Low_complexity Low_complexity 1 43 0 2266 132 0 0 chr3 6334834 6335138 -221189440 + AluSx SINE Alu 1 304 -8 9834 53 11 0 chr3 6335142 6336392 -221188186 + HSMAR1 DNA Mariner 24 1287 0 785 161 0 0 chr3 6336470 6336594 -221187984 + FLAM_C SINE Alu 1 124 -9 361 238 34 17 chr3 6336790 6336937 -221187641 + MIR SINE MIR 69 260 -2 372 284 20 0 chr3 6337063 6337165 -221187413 + Zaphod DNA AcHobo 12 115 -3916 1841 202 46 12 chr3 6337196 6337677 -221186901 + L1MC3 LINE L1 3657 4153 -1993 4414 168 66 16 chr3 6337678 6337695 -221186883 + L1MC3 LINE L1 5273 5288 -2497 1997 152 7 0 chr3 6337695 6337992 -221186586 + AluSx SINE Alu 1 299 -13 4414 168 66 16 chr3 6337992 6338321 -221186257 + L1MC3 LINE L1 5288 5599 -2186 1695 174 142 12 chr3 6338321 6338729 -221185849 - LOR1b LTR ERV1 0 461 1 4414 168 66 16 chr3 6338729 6339426 -221185152 + L1MC3 LINE L1 5599 6369 -1416 480 170 76 82 chr3 6339426 6339597 -221184981 - LTR48 LTR ERV1 -4 783 614 1479 187 132 46 chr3 6339626 6340065 -221184513 - LTR48 LTR ERV1 -310 477 1 5899 140 39 94 chr3 6340081 6341541 -221183037 + L1MC3 LINE L1 6380 7759 -26 896 174 6 45 chr3 6341575 6341753 -221182825 + FRAM SINE Alu 1 171 -5 782 192 53 70 chr3 6341753 6341948 -221182630 + L1M3 LINE L1 5481 5686 -485 259 149 0 21 chr3 6341948 6341995 -221182583 + Alu SINE Alu 245 290 -12 782 192 53 70 chr3 6341995 6342125 -221182453 + L1M3 LINE L1 5686 5817 -354 * 1932 171 49 63 chr3 6342118 6342626 -221181952 + L1MB7 LINE L1 5676 6176 -8 243 227 0 0 chr3 6342626 6342692 -221181886 + GA-rich Low_complexity Low_complexity 5 70 0 825 260 96 14 chr3 6342728 6343009 -221181569 + Zaphod DNA AcHobo 154 457 -3574 234 197 212 0 chr3 6343027 6343093 -221181485 + Zaphod DNA AcHobo 584 663 -3368 * 971 191 221 13 chr3 6343092 6343389 -221181189 + Zaphod DNA AcHobo 3282 3640 -391 927 197 25 142 chr3 6343389 6343916 -221180662 - MER4C LTR ERV1 0 465 1 2257 146 28 8 chr3 6343925 6344282 -221180296 - THE1B LTR MaLR 0 364 1 386 301 7 0 chr3 6344331 6344467 -221180111 - MER4C-int LTR ERV1 -79 6519 6383 262 237 30 69 chr3 6344464 6344595 -221179983 - MER4C-int LTR ERV1 -175 6423 6298 * 329 185 0 25 chr3 6344595 6344676 -221179902 + (TATG)n Simple_repeat Simple_repeat 4 82 0 207 0 0 0 chr3 6344678 6344701 -221179877 + (CA)n Simple_repeat Simple_repeat 2 24 0 8705 136 52 22 chr3 6344703 6344952 -221179626 - MER4C-int LTR ERV1 -491 5840 5600 1720 134 0 0 chr3 6344952 6345191 -221179387 - AluSx SINE Alu -73 239 1 8705 136 52 22 chr3 6345191 6345592 -221178986 - MER4C-int LTR ERV1 -731 5600 5212 1875 174 0 10 chr3 6345592 6345890 -221178688 - AluSx SINE Alu -17 295 1 8705 136 52 22 chr3 6345890 6347004 -221177574 - MER4C-int LTR ERV1 -1118 5213 4022 1409 213 7 23 chr3 6347017 6347318 -221177260 + AluJb SINE Alu 15 310 -2 25 0 0 0 chr3 6347320 6347345 -221177233 + AT_rich Low_complexity Low_complexity 1 25 0 3206 185 61 98 chr3 6347345 6347416 -221177162 - MER4C-int LTR ERV1 -1382 3498 3426 2151 127 71 3 chr3 6347416 6347756 -221176822 - THE1B LTR MaLR -1 363 1 11360 92 7 29 chr3 6347756 6349371 -221175207 - THE1B-int LTR MaLR 0 1580 1 2252 124 31 6 chr3 6349371 6349726 -221174852 - THE1B LTR MaLR 0 364 1 3206 185 61 98 chr3 6349726 6350615 -221173963 - MER4C-int LTR ERV1 -1452 3428 2409 2125 123 0 13 chr3 6350615 6350923 -221173655 + AluSx SINE Alu 1 304 -8 3206 185 61 98 chr3 6350923 6351480 -221173098 - MER4C-int LTR ERV1 -2471 2409 1833 240 222 69 14 chr3 6351622 6351694 -221172884 - MER34C LTR ERV1 -355 230 155 2238 161 34 8 chr3 6351780 6352472 -221172106 + LTR1B LTR ERV1 1 816 -10 840 182 0 155 chr3 6352480 6352776 -221171802 - MER4C-int LTR ERV1 -4143 3394 3145 1201 196 94 65 chr3 6352858 6352915 -221171663 - MER4C-int LTR ERV1 -4568 1763 1709 1548 219 7 3 chr3 6352915 6353207 -221171371 + AluJo SINE Alu 1 293 -19 1201 196 94 65 chr3 6353207 6353551 -221171027 - MER4C-int LTR ERV1 -4622 1709 1350 516 159 122 97 chr3 6353641 6353756 -221170822 - MER4C-int LTR ERV1 -4933 1398 1287 358 250 0 0 chr3 6353756 6353828 -221170750 - tRNA-Glu-GAG tRNA tRNA -1 74 3 516 159 122 97 chr3 6353828 6354023 -221170555 - MER4C-int LTR ERV1 -5044 1287 994 717 234 77 19 chr3 6354480 6354732 -221169846 - MER4C-int LTR ERV1 -6162 436 79 2124 113 0 55 chr3 6354732 6355059 -221169519 + AluSg SINE Alu 1 309 -1 717 234 77 19 chr3 6355059 6355143 -221169435 - MER4C-int LTR ERV1 -6519 79 1 1015 199 37 135 chr3 6355149 6355661 -221168917 - MER4C LTR ERV1 -3 462 1 1177 223 28 3 chr3 6355661 6355943 -221168635 + Zaphod DNA AcHobo 3637 3925 -106 459 155 0 0 chr3 6356253 6356337 -221168241 + CT-rich Low_complexity Low_complexity 1 84 0 749 189 6 89 chr3 6357187 6357367 -221167211 + FRAM SINE Alu 1 164 -12 241 317 0 12 chr3 6357950 6358032 -221166546 + L2 LINE L2 3134 3214 -58 860 276 85 39 chr3 6358377 6358787 -221165791 - LTR16A LTR ERVL -5 445 17 185 286 18 0 chr3 6358808 6358864 -221165714 - MER5A DNA MER1_type -6 183 127 1943 150 0 3 chr3 6358864 6359151 -221165427 + AluJb SINE Alu 1 286 -26 222 176 0 0 chr3 6359151 6359202 -221165376 + (CA)n Simple_repeat Simple_repeat 1 51 0 795 193 0 0 chr3 6359202 6359337 -221165241 - MER5A DNA MER1_type -53 136 2 576 331 48 51 chr3 6359464 6359899 -221164679 - L2 LINE L2 -504 2810 2377 2074 135 0 3 chr3 6361332 6361621 -221162957 + AluSx SINE Alu 1 288 -24 185 233 0 23 chr3 6362007 6362050 -221162528 - MIR SINE MIR -62 146 105 180 402 51 8 chr3 6362077 6362194 -221162384 + MER5A DNA MER1_type 49 170 -19 515 266 62 35 chr3 6362796 6363022 -221161556 + L1ME LINE L1 5547 5778 -343 1539 92 0 0 chr3 6363153 6363359 -221161219 + L1PA8A LINE L1 10 215 -5660 * 27940 128 12 13 chr3 6363356 6367665 -221156913 + L1PA8A LINE L1 1022 5362 -1084 2048 110 0 34 chr3 6367665 6367977 -221156601 + AluSp SINE Alu 1 302 0 27940 128 12 13 chr3 6367977 6369060 -221155518 + L1PA8A LINE L1 5362 6445 -1 1888 111 0 73 chr3 6369080 6369396 -221155182 - AluSg SINE Alu -9 301 9 306 169 0 0 chr3 6369400 6369465 -221155113 + (TG)n Simple_repeat Simple_repeat 2 66 0 23 0 0 0 chr3 6370246 6370269 -221154309 + AT_rich Low_complexity Low_complexity 1 23 0 613 226 0 0 chr3 6371009 6371124 -221153454 - MIR SINE MIR -136 126 12 272 290 102 62 chr3 6371283 6371459 -221153119 + MIR SINE MIR 56 238 -24 207 0 0 0 chr3 6371814 6371837 -221152741 + (A)n Simple_repeat Simple_repeat 1 23 0 305 311 48 0 chr3 6371931 6372034 -221152544 - L3b LINE CR1 -199 1384 1277 562 228 9 0 chr3 6372081 6372195 -221152383 - Charlie1 DNA MER1_type -1 2760 2646 657 212 8 8 chr3 6372202 6372320 -221152258 + FLAM_C SINE Alu 3 120 -23 2533 45 0 0 chr3 6372346 6372634 -221151944 - AluY SINE Alu -23 288 1 880 221 103 0 chr3 6372643 6372847 -221151731 - Charlie1 DNA MER1_type -2536 225 1 1641 179 43 13 chr3 6372935 6373237 -221151341 - AluJo SINE Alu -1 311 1 487 241 182 32 chr3 6373913 6374133 -221150445 - MIR SINE MIR -8 254 2 1765 170 0 23 chr3 6374151 6374457 -221150121 + AluJb SINE Alu 2 300 -12 537 273 23 102 chr3 6375717 6376021 -221148557 + Charlie8 DNA MER1_type 9 288 -2129 2158 99 3 0 chr3 6376660 6376990 -221147588 - AluSq SINE Alu 0 331 1 230 143 71 0 chr3 6377784 6377826 -221146752 + Tigger6b DNA MER2_type 818 862 -735 1836 144 0 47 chr3 6378372 6378575 -221146003 - AluJo SINE Alu -24 288 102 2372 103 71 8 chr3 6378575 6378926 -221145652 - THE1C LTR MaLR -2 373 1 1836 144 0 47 chr3 6378926 6379020 -221145558 - AluJo SINE Alu -210 102 5 207 69 0 0 chr3 6379281 6379310 -221145268 + (T)n Simple_repeat Simple_repeat 1 29 0 1988 151 6 22 chr3 6379407 6379718 -221144860 - AluSx SINE Alu -6 306 1 342 279 55 24 chr3 6380812 6380977 -221143601 - MIR3 SINE MIR -24 184 15 720 209 144 56 chr3 6381535 6381724 -221142854 + L1ME4a LINE L1 5667 5838 -283 1652 199 27 0 chr3 6381724 6382016 -221142562 + AluJo SINE Alu 1 300 -12 720 209 144 56 chr3 6382016 6382146 -221142432 + L1ME4a LINE L1 5838 6014 -107 33789 36 2 2 chr3 6382447 6386487 -221138091 - L1P LINE L1 -1633 4513 472 7124 36 0 0 chr3 6386482 6387734 -221136844 + L1P1 LINE L1 4554 5805 -350 * 23 0 0 0 chr3 6388131 6388154 -221136424 + AT_rich Low_complexity Low_complexity 1 23 0 781 253 21 11 chr3 6388730 6388916 -221135662 - MER5A DNA MER1_type 0 189 2 609 276 134 32 chr3 6388984 6389328 -221135250 - L2 LINE L2 -1 3312 2934 934 259 59 8 chr3 6390756 6390992 -221133586 - MIR SINE MIR 0 262 15 2070 122 25 0 chr3 6391109 6391395 -221133183 + AluSx SINE Alu 1 293 -19 21 95 0 0 chr3 6391450 6391513 -221133065 + AT_rich Low_complexity Low_complexity 1 63 0 786 274 34 1 chr3 6391646 6391865 -221132713 - MIR SINE MIR -6 256 30 859 219 72 0 chr3 6392153 6392432 -221132146 + L1MEc LINE L1 2020 2318 -4078 479 256 0 0 chr3 6392411 6392532 -221132046 + L1MEc LINE L1 3433 3553 -2662 * 525 217 19 9 chr3 6392535 6392641 -221131937 + AluJo SINE Alu 116 222 -90 2806 224 54 15 chr3 6392667 6393448 -221131130 + L1MEc LINE L1 3584 4394 -1821 1611 157 102 4 chr3 6393963 6394237 -221130341 + AluJo SINE Alu 1 301 -11 782 199 34 28 chr3 6394418 6394594 -221129984 + MER5B DNA MER1_type 2 178 0 211 333 121 0 chr3 6395537 6395702 -221128876 + L2 LINE L2 2864 3048 -224 1912 149 0 17 chr3 6395883 6396178 -221128400 - AluJo SINE Alu -22 290 1 711 153 0 8 chr3 6396280 6396398 -221128180 - L1ME1 LINE L1 -5 6161 6045 319 194 124 5 chr3 6396435 6396578 -221128000 - MIR SINE MIR -27 235 13 2298 154 3 16 chr3 6397129 6397500 -221127078 - MER47A DNA MER2_type 0 366 1 1317 219 108 23 chr3 6398259 6398648 -221125930 + MLT1C LTR MaLR 1 422 -45 1826 102 31 0 chr3 6398687 6398942 -221125636 + AluSc SINE Alu 42 304 -5 230 132 26 0 chr3 6398951 6398989 -221125589 + MLT1B LTR MaLR 352 390 0 2871 139 7 16 chr3 6399231 6399671 -221124907 + L1PA15 LINE L1 5728 6163 -2 2378 84 7 0 chr3 6400262 6400571 -221124007 + L1PB1 LINE L1 5841 6151 0 606 230 57 63 chr3 6400687 6400839 -221123739 + L1MC5 LINE L1 7027 7178 -801 1826 153 0 14 chr3 6400839 6401126 -221123452 + AluJb SINE Alu 1 283 -29 183 42 0 0 chr3 6401129 6401153 -221123425 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 606 230 57 63 chr3 6401153 6401223 -221123355 + L1MC5 LINE L1 7180 7251 -728 285 98 0 0 chr3 6401392 6401433 -221123145 + (CA)n Simple_repeat Simple_repeat 2 42 0 425 217 43 122 chr3 6401442 6401583 -221122995 + L1MC5 LINE L1 7310 7460 -501 4795 68 0 3 chr3 6401583 6402161 -221122417 + L1PA7 LINE L1 5579 6154 0 425 217 43 122 chr3 6402161 6402173 -221122405 + L1MC5 LINE L1 7460 7471 -490 2227 129 0 0 chr3 6402173 6402484 -221122094 + AluSx SINE Alu 1 311 -1 425 217 43 122 chr3 6402484 6402559 -221122019 + L1MC5 LINE L1 7471 7521 -440 1520 213 216 17 chr3 6402587 6402995 -221121583 + LTR40a LTR ERVL 31 519 0 336 254 71 61 chr3 6403033 6403328 -221121250 - L1MCa LINE L1 -4387 1995 1698 * 9888 210 48 22 chr3 6403324 6403950 -221120628 - L1MD1 LINE L1 -1 6635 6027 2175 125 0 0 chr3 6403950 6404262 -221120316 - AluSx SINE Alu 0 312 1 9888 210 48 22 chr3 6404262 6409672 -221114906 - L1MD1 LINE L1 -609 6027 202 1440 171 0 0 chr3 6409677 6409894 -221114684 - AluJb SINE Alu -30 282 66 603 259 63 0 chr3 6409900 6410043 -221114535 - L1MD1 LINE L1 -6358 182 31 1680 235 66 84 chr3 6410072 6410542 -221114036 - L1MCa LINE L1 -4727 1657 1180 1718 183 3 25 chr3 6410542 6410859 -221113719 - AluJb SINE Alu -2 310 1 1680 235 66 84 chr3 6410859 6410893 -221113685 - L1MCa LINE L1 -5204 1180 1147 1851 183 3 3 chr3 6410893 6411204 -221113374 - AluJb SINE Alu -1 311 1 1680 235 66 84 chr3 6411204 6411607 -221112971 - L1MCa LINE L1 -5237 1147 765 227 64 0 43 chr3 6411685 6411732 -221112846 + LTR66 LTR ERVL 394 438 -172 180 77 0 0 chr3 6411733 6411759 -221112819 + (GA)n Simple_repeat Simple_repeat 2 27 0 249 33 0 0 chr3 6411808 6411838 -221112740 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 1685 191 3 3 chr3 6412410 6412709 -221111869 - AluJo SINE Alu -13 299 1 198 0 0 0 chr3 6412710 6412732 -221111846 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 22 0 0 0 chr3 6412732 6412754 -221111824 + AT_rich Low_complexity Low_complexity 1 22 0 475 188 11 152 chr3 6413035 6413248 -221111330 + L1MC5 LINE L1 7545 7712 -249 1715 168 45 3 chr3 6413248 6413534 -221111044 - AluJb SINE Alu -14 298 1 475 188 11 152 chr3 6413534 6413597 -221110981 + L1MC5 LINE L1 7712 7782 -179 829 223 13 12 chr3 6413640 6413942 -221110636 + MLT2F LTR ERVL 8 376 -287 560 273 0 27 chr3 6414119 6414269 -221110309 - MIR SINE MIR -64 198 53 421 217 22 0 chr3 6415071 6415163 -221109415 + MER94 DNA DNA 10 103 -31 483 282 25 0 chr3 6415175 6415316 -221109262 - MIR SINE MIR -62 146 2 872 269 49 4 chr3 6416967 6417212 -221107366 - MIR SINE MIR -4 258 3 266 304 128 20 chr3 6417295 6417397 -221107181 + L2 LINE L2 3155 3267 -5 24 0 0 0 chr3 6417705 6417729 -221106849 + AT_rich Low_complexity Low_complexity 1 24 0 1895 143 61 3 chr3 6418822 6419115 -221105463 - AluSg SINE Alu 0 310 1 375 282 172 6 chr3 6419705 6419879 -221104699 - MIR SINE MIR -12 250 48 5246 56 0 0 chr3 6419894 6420501 -221104077 - L1PA6 LINE L1 -3 6151 5545 238 339 85 23 chr3 6420653 6420783 -221103795 - MIR3 SINE MIR -69 139 2 200 303 100 74 chr3 6421363 6421634 -221102944 + L2 LINE L2 2985 3262 -10 496 290 129 28 chr3 6421638 6421886 -221102692 + L3 LINE CR1 605 877 -700 209 312 64 9 chr3 6421944 6422053 -221102525 + L3 LINE CR1 842 956 -621 552 283 46 32 chr3 6422163 6422382 -221102196 - MIR SINE MIR -27 235 14 817 329 62 48 chr3 6422418 6422920 -221101658 + L3 LINE CR1 1019 1527 -50 2124 105 3 24 chr3 6423554 6423870 -221100708 + AluSp SINE Alu 1 310 0 194 227 0 23 chr3 6423925 6423969 -221100609 + L2 LINE L2 3262 3304 -9 1966 156 0 3 chr3 6424463 6424765 -221099813 - AluJb SINE Alu -10 302 2 2109 130 0 13 chr3 6425452 6425767 -221098811 + AluSx SINE Alu 1 311 -1 252 0 0 0 chr3 6426164 6426192 -221098386 + (CA)n Simple_repeat Simple_repeat 2 29 0 393 282 87 28 chr3 6427047 6427299 -221097279 + L1MCc LINE L1 1177 1443 -4980 225 333 0 0 chr3 6427309 6427390 -221097188 + L1ME LINE L1 5428 5508 -851 832 176 0 0 chr3 6427624 6427755 -221096823 + FLAM_C SINE Alu 1 131 -12 2043 110 36 7 chr3 6427767 6428068 -221096510 + AluSx SINE Alu 1 310 -2 492 310 123 0 chr3 6428098 6428285 -221096293 - L2 LINE L2 -541 2773 2564 21 57 0 0 chr3 6430898 6430933 -221093645 + AT_rich Low_complexity Low_complexity 1 35 0 2021 122 3 20 chr3 6431680 6431984 -221092594 + AluSx SINE Alu 1 299 -13 1784 183 0 3 chr3 6432092 6432382 -221092196 - AluJb SINE Alu -21 291 3 322 219 73 0 chr3 6432402 6432484 -221092094 + MIR SINE MIR 86 173 -89 1677 175 0 45 chr3 6432822 6432951 -221091627 + AluJo SINE Alu 1 134 -178 2091 127 0 3 chr3 6432951 6433243 -221091335 - AluSx SINE Alu -21 291 1 1677 175 0 45 chr3 6433243 6433421 -221091157 + AluJo SINE Alu 134 294 -18 1964 136 58 0 chr3 6434040 6434335 -221090243 + AluSx SINE Alu 1 312 0 330 299 49 37 chr3 6434444 6434608 -221089970 + L1ME LINE L1 5502 5667 -454 2132 130 0 0 chr3 6434609 6434920 -221089658 + AluSx SINE Alu 1 311 0 764 188 79 50 chr3 6434938 6435140 -221089438 + MLT1A1 LTR MaLR 157 364 -1 393 275 126 60 chr3 6435228 6435592 -221088986 + L1ME4a LINE L1 5557 5944 -177 1108 223 20 12 chr3 6435619 6435866 -221088712 + MIR SINE MIR 14 262 0 428 260 82 7 chr3 6435876 6436022 -221088556 + L1ME4a LINE L1 5960 6116 -5 26 0 0 0 chr3 6436436 6436462 -221088116 + AT_rich Low_complexity Low_complexity 1 26 0 491 271 100 24 chr3 6437580 6437831 -221086747 + LTR16A LTR ERVL 180 449 -1 321 170 0 0 chr3 6438076 6438129 -221086449 - L2 LINE L2 0 3272 3220 2281 87 0 3 chr3 6439476 6439774 -221084804 - AluY SINE Alu -14 297 1 323 269 81 44 chr3 6439964 6440151 -221084427 + MIR SINE MIR 40 229 -33 619 271 57 38 chr3 6440221 6440431 -221084147 + MIR SINE MIR 15 228 -34 1843 146 0 17 chr3 6440568 6440863 -221083715 - AluJb SINE Alu -22 290 1 26 0 0 0 chr3 6441445 6441471 -221083107 + AT_rich Low_complexity Low_complexity 1 26 0 881 229 47 74 chr3 6441492 6441787 -221082791 - L1MC3 LINE L1 -390 5780 5589 31 26 0 0 chr3 6441846 6441884 -221082694 + AT_rich Low_complexity Low_complexity 1 38 0 1994 86 67 0 chr3 6441885 6442153 -221082425 - L1PB1 LINE L1 -2 6149 5864 1888 92 62 0 chr3 6442153 6442358 -221082220 + L1PB1 LINE L1 5573 5801 -350 333 0 0 0 chr3 6442358 6442395 -221082183 + (CA)n Simple_repeat Simple_repeat 2 38 0 1888 92 62 0 chr3 6442395 6442462 -221082116 + L1PB1 LINE L1 5801 5862 -289 215 205 0 0 chr3 6442590 6442629 -221081949 - L2 LINE L2 -13 3300 3262 22 70 0 0 chr3 6442694 6442737 -221081841 + AT_rich Low_complexity Low_complexity 1 43 0 2446 150 43 26 chr3 6442737 6443156 -221081422 + MSTB LTR MaLR 1 426 0 1071 180 15 40 chr3 6443959 6444159 -221080419 - MER20 DNA MER1_type 0 219 25 973 260 4 13 chr3 6444229 6444460 -221080118 + MIR SINE MIR 7 235 -27 2450 94 10 104 chr3 6444800 6445202 -221079376 - THE1B LTR MaLR 0 364 1 366 268 85 68 chr3 6447193 6447438 -221077140 + L1ME4a LINE L1 5808 6060 -61 1935 163 0 0 chr3 6447438 6447732 -221076846 - AluJo SINE Alu -18 294 1 366 268 85 68 chr3 6447732 6447781 -221076797 + L1ME4a LINE L1 6060 6107 -14 403 253 103 79 chr3 6447989 6448242 -221076336 - L1ME4a LINE L1 -239 5882 5624 305 319 166 25 chr3 6449059 6449222 -221075356 - MIR3 SINE MIR -15 193 8 306 252 72 9 chr3 6449308 6449419 -221075159 + MER103 DNA DNA 18 135 -31 421 261 6 85 chr3 6449419 6449584 -221074994 + MIR SINE MIR 33 184 -78 251 246 15 0 chr3 6449677 6449742 -221074836 - L2 LINE L2 -7 3306 3241 183 420 37 0 chr3 6450047 6450128 -221074450 - L3 LINE CR1 -10 1567 1484 2593 201 14 20 chr3 6450199 6450839 -221073739 + LTR27 LTR ERV1 3 696 -134 229 220 102 17 chr3 6450830 6450889 -221073689 + LTR27 LTR ERV1 570 633 -3 * 375 244 37 0 chr3 6450896 6450978 -221073600 - MER94 DNA DNA -49 85 1 445 331 103 29 chr3 6450981 6451262 -221073316 - L3 LINE CR1 -95 1482 1181 296 254 328 53 chr3 6451270 6451663 -221072915 + L2 LINE L2 2400 2900 -414 * 484 294 70 56 chr3 6451661 6451947 -221072631 + L2 LINE L2 3008 3297 -16 2009 150 72 0 chr3 6453041 6453374 -221071204 + L1MB4 LINE L1 5816 6172 -8 309 311 10 19 chr3 6453633 6453736 -221070842 - MIR SINE MIR -12 250 149 1827 226 79 45 chr3 6453914 6454004 -221070574 + L1MDa LINE L1 669 755 -5374 2151 110 3 10 chr3 6454004 6454303 -221070275 - AluSx SINE Alu -13 299 3 1827 226 79 45 chr3 6454303 6455065 -221069513 + L1MDa LINE L1 755 1708 -4421 848 153 0 29 chr3 6455079 6455216 -221069362 + AluJb SINE Alu 2 134 -178 327 200 130 52 chr3 6455225 6455495 -221069083 + L1MDa LINE L1 1718 2008 -4121 427 231 30 60 chr3 6455526 6455660 -221068918 + L1MDa LINE L1 1063 1192 -4927 239 211 42 0 chr3 6455681 6455752 -221068826 + L1MEd LINE L1 2848 2921 -3208 391 248 97 52 chr3 6455789 6456157 -221068421 + L1MDa LINE L1 1231 1667 -823 503 251 71 51 chr3 6456491 6456734 -221067844 + L1MDa LINE L1 1997 2257 -3872 2239 123 7 0 chr3 6456734 6457044 -221067534 + AluSx SINE Alu 1 312 0 503 251 71 51 chr3 6457044 6457210 -221067368 + L1MDa LINE L1 2257 2418 -3711 21 100 0 0 chr3 6457221 6457291 -221067287 + AT_rich Low_complexity Low_complexity 1 70 0 1501 180 0 42 chr3 6457367 6457673 -221066905 + MER31B LTR ERV1 1 293 -173 895 300 84 18 chr3 6457675 6458305 -221066273 + L1MDa LINE L1 2409 3080 -3049 231 294 58 19 chr3 6458305 6458317 -221066261 - MIR SINE MIR -86 122 112 1908 135 0 10 chr3 6458317 6458613 -221065965 + AluJo SINE Alu 1 293 -19 231 294 58 19 chr3 6458613 6458699 -221065879 - MIR SINE MIR -96 112 22 603 183 87 32 chr3 6458803 6458929 -221065649 - FLAM_C SINE Alu 0 133 1 2397 73 0 29 chr3 6459028 6459341 -221065237 + AluSq SINE Alu 1 304 -9 3743 139 2 13 chr3 6460091 6460624 -221063954 + MER1A DNA MER1_type 1 527 0 2255 19 0 15 chr3 6461334 6461595 -221062983 - AluY SINE Alu -14 297 41 251 300 14 0 chr3 6461702 6461772 -221062806 + GA-rich Low_complexity Low_complexity 2 72 0 1909 141 3 16 chr3 6462070 6462374 -221062204 + AluSx SINE Alu 1 300 -12 681 320 47 36 chr3 6462475 6462558 -221062020 + HAL1b LINE L1 1 82 -1266 1817 173 3 6 chr3 6462558 6462871 -221061707 + AluJo SINE Alu 1 312 0 681 320 47 36 chr3 6462871 6463403 -221061175 + HAL1b LINE L1 82 623 -725 575 258 101 69 chr3 6463647 6464128 -221060450 + L1MC5 LINE L1 5975 6774 -1034 409 255 50 28 chr3 6464088 6464229 -221060349 + L1MB8 LINE L1 5975 6118 -60 * 353 183 37 0 chr3 6464256 6464338 -221060240 + L1MB7 LINE L1 6090 6174 -10 1781 165 0 38 chr3 6464405 6464721 -221059857 - AluJo SINE Alu -8 304 1 1792 191 55 92 chr3 6464721 6464769 -221059809 + L1MC5 LINE L1 6928 6976 -985 1367 192 7 19 chr3 6464769 6465040 -221059538 + L1MD2 LINE L1 6090 6357 -2 1792 191 55 92 chr3 6465040 6465231 -221059347 + L1MC5 LINE L1 6976 7173 -788 2774 110 6 3 chr3 6465231 6465594 -221058984 + THE1B LTR MaLR 1 364 0 1792 191 55 92 chr3 6465594 6465976 -221058602 + L1MC5 LINE L1 7173 7527 -434 503 250 28 65 chr3 6466062 6466278 -221058300 + L1ME3A LINE L1 5963 6170 0 755 208 95 41 chr3 6466301 6466595 -221057983 + MER113 DNA MER1_type? 175 484 -37 431 325 16 26 chr3 6469142 6469333 -221055245 - MER5A DNA MER1_type 0 189 1 775 333 71 50 chr3 6469588 6470026 -221054552 - L2 LINE L2 0 3272 2826 1691 204 109 12 chr3 6470071 6470149 -221054429 - Charlie4a DNA MER1_type -1458 503 434 205 27 81 0 chr3 6470149 6470186 -221054392 + A-rich Low_complexity Low_complexity 5 44 0 1691 204 109 12 chr3 6470186 6470498 -221054080 - Charlie4a DNA MER1_type -1527 434 65 628 89 0 0 chr3 6470498 6470577 -221054001 - MADE1 DNA Mariner 0 80 2 1691 204 109 12 chr3 6470577 6470617 -221053961 - Charlie4a DNA MER1_type -1896 65 30 2256 78 17 0 chr3 6470764 6471059 -221053519 - AluY SINE Alu -11 300 1 731 245 92 40 chr3 6471642 6471891 -221052687 + MIR SINE MIR 1 262 0 1533 174 41 27 chr3 6472447 6472610 -221051968 - AluJb SINE Alu -15 297 127 2461 70 0 3 chr3 6472610 6472910 -221051668 - AluSx SINE Alu -13 299 1 1533 174 41 27 chr3 6472910 6473039 -221051539 - AluJb SINE Alu -185 127 1 1249 293 57 14 chr3 6473334 6473928 -221050650 + L1PA4 LINE L1 5306 5925 -230 * 4657 148 26 1 chr3 6473408 6474163 -221050415 + L1MB7 LINE L1 5391 6164 -20 4572 177 22 10 chr3 6474321 6474510 -221050068 + L1 LINE L1 3317 3502 -2644 2170 106 0 3 chr3 6474510 6474818 -221049760 + AluSx SINE Alu 1 307 0 4572 177 22 10 chr3 6474818 6475521 -221049057 + L1 LINE L1 3502 4221 -1925 1363 97 0 0 chr3 6475521 6475696 -221048882 - AluY SINE Alu -5 306 132 402 147 0 0 chr3 6475696 6475764 -221048814 + (TA)n Simple_repeat Simple_repeat 2 69 0 225 103 0 0 chr3 6475764 6475803 -221048775 + LTR66 LTR ERVL 398 436 -174 231 333 0 0 chr3 6475826 6475916 -221048662 - L1MC4 LINE L1 -1339 6703 6614 * 241 269 0 43 chr3 6475839 6475932 -221048646 + L1MC4 LINE L1 6615 6703 -1339 659 209 9 8 chr3 6475933 6476170 -221048408 + (TATATG)n Simple_repeat Simple_repeat 1 237 0 975 112 0 0 chr3 6476193 6476318 -221048260 - AluSq/x SINE Alu -188 125 1 335 155 0 0 chr3 6476318 6476376 -221048202 + L1MA7 LINE L1 4326 4383 -1763 5828 136 28 18 chr3 6476419 6477650 -221046928 + L1MA7 LINE L1 4585 5836 -455 2349 79 0 3 chr3 6477650 6477954 -221046624 + AluY SINE Alu 1 303 -8 5828 136 28 18 chr3 6477954 6478415 -221046163 + L1MA7 LINE L1 5836 6291 0 517 248 17 102 chr3 6478989 6479286 -221045292 + L1MC4a LINE L1 5707 5822 -332 294 50 0 0 chr3 6479676 6479716 -221044862 + (TG)n Simple_repeat Simple_repeat 2 41 0 240 35 0 0 chr3 6479715 6479744 -221044834 + (TA)n Simple_repeat Simple_repeat 2 30 0 * 1464 184 14 14 chr3 6479744 6480027 -221044551 - AluJo SINE Alu -25 287 5 343 325 71 0 chr3 6480049 6480175 -221044403 + L2 LINE L2 3177 3311 -2 719 279 190 52 chr3 6481142 6481658 -221042920 + MLT1K LTR MaLR 2 588 0 23 0 0 0 chr3 6481769 6481792 -221042786 + AT_rich Low_complexity Low_complexity 1 23 0 297 253 96 12 chr3 6481973 6482056 -221042522 + MIR SINE MIR 98 187 -75 2239 85 0 4 chr3 6482286 6482591 -221041987 + AluSc SINE Alu 1 304 0 294 50 0 0 chr3 6483469 6483509 -221041069 + (TG)n Simple_repeat Simple_repeat 1 40 0 231 266 73 97 chr3 6483525 6483649 -221040929 + L2 LINE L2 3188 3308 -5 2278 109 0 13 chr3 6484271 6484583 -221039995 + AluSc SINE Alu 1 308 -1 199 255 0 21 chr3 6485072 6485119 -221039459 + MIR SINE MIR 19 64 -144 2550 42 0 7 chr3 6485182 6485488 -221039090 - AluSg SINE Alu -6 304 1 346 200 32 42 chr3 6486557 6486652 -221037926 - MIR SINE MIR 0 262 169 1105 82 0 7 chr3 6486659 6486806 -221037772 + AluSc SINE Alu 150 295 -14 506 219 0 0 chr3 6486811 6486907 -221037671 + MER5A DNA MER1_type 94 189 0 444 228 28 108 chr3 6486947 6486994 -221037584 + L1MC5 LINE L1 7476 7525 -436 2520 46 3 3 chr3 6486994 6487297 -221037281 + AluY SINE Alu 1 303 -8 444 228 28 108 chr3 6487297 6487499 -221037079 + L1MC5 LINE L1 7525 7705 -256 246 143 0 0 chr3 6487511 6487560 -221037018 + (CA)n Simple_repeat Simple_repeat 2 50 0 493 255 78 21 chr3 6487563 6487755 -221036823 + L1MC5 LINE L1 7731 7933 -28 1876 155 0 3 chr3 6487755 6488052 -221036526 + AluJo SINE Alu 1 296 -16 205 336 95 0 chr3 6488086 6488202 -221036376 - MIR SINE MIR -48 214 88 293 342 63 0 chr3 6488347 6488458 -221036120 + L2 LINE L2 3147 3264 -8 447 297 36 26 chr3 6488573 6488765 -221035813 + MIR SINE MIR 69 262 0 400 271 57 8 chr3 6489092 6489214 -221035364 - L2 LINE L2 -379 2934 2807 197 265 235 0 chr3 6489217 6489319 -221035259 - L2 LINE L2 -469 2845 2720 1249 306 55 26 chr3 6489362 6489943 -221034635 - HERV16 LTR ERVL -743 5021 4424 1187 117 42 124 chr3 6489955 6490143 -221034435 - L1M4 LINE L1 -408 5770 5611 1503 169 43 32 chr3 6490143 6490421 -221034157 - AluJb SINE Alu -31 281 1 1187 117 42 124 chr3 6490421 6490515 -221034063 - L1M4 LINE L1 -567 5611 5511 1419 298 72 50 chr3 6490533 6491251 -221033327 - HERV16 LTR ERVL -4136 860 127 227 288 0 0 chr3 6491367 6491426 -221033152 - LTR16B LTR ERVL 0 464 406 430 169 26 0 chr3 6491459 6491536 -221033042 + FLAM_C SINE Alu 65 143 0 426 204 0 0 chr3 6491540 6491633 -221032945 + A-rich Low_complexity Low_complexity 1 93 0 519 358 33 25 chr3 6491660 6492023 -221032555 - LTR16B LTR ERVL -65 399 34 1353 276 117 15 chr3 6492086 6492549 -221032029 + L2 LINE L2 2804 3313 0 501 221 8 33 chr3 6492769 6492891 -221031687 - L2 LINE L2 0 3313 3195 201 276 53 0 chr3 6492888 6492964 -221031614 + MIR SINE MIR 183 262 0 * 21 0 0 0 chr3 6493010 6493031 -221031547 + AT_rich Low_complexity Low_complexity 1 21 0 2589 45 3 0 chr3 6493274 6493584 -221030994 - AluY SINE Alu 0 311 1 578 223 159 19 chr3 6494224 6494381 -221030197 - MER5A DNA MER1_type -10 179 1 2041 183 21 50 chr3 6495582 6496047 -221028531 + MLT1D LTR MaLR 54 505 0 622 212 18 0 chr3 6496566 6496679 -221027899 - MER5A DNA MER1_type -3 186 72 524 186 0 21 chr3 6496679 6496776 -221027802 - AluJo SINE Alu -1 311 217 808 175 0 42 chr3 6496777 6496920 -221027658 - AluJo SINE Alu -167 145 9 407 190 0 25 chr3 6496923 6497002 -221027576 - MER5A DNA MER1_type -109 80 4 491 296 87 6 chr3 6497034 6497206 -221027372 + MIR SINE MIR 61 246 -16 24 0 0 0 chr3 6497986 6498010 -221026568 + AT_rich Low_complexity Low_complexity 1 24 0 1855 95 4 58 chr3 6498016 6498290 -221026288 + AluSx SINE Alu 1 259 -53 255 103 0 0 chr3 6498303 6498342 -221026236 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 248 282 137 30 chr3 6498415 6498546 -221026032 + MIR3 SINE MIR 16 160 -48 571 261 69 42 chr3 6498713 6498931 -221025647 - MIR SINE MIR 0 262 29 1310 158 5 23 chr3 6499392 6499613 -221024965 + AluJo SINE Alu 64 280 -32 306 0 0 0 chr3 6499613 6499647 -221024931 + (TAA)n Simple_repeat Simple_repeat 2 35 0 184 247 398 11 chr3 6499707 6499800 -221024778 - MIR SINE MIR -85 177 49 2794 130 28 77 chr3 6499810 6499842 -221024736 - L1MB8 LINE L1 0 6178 6146 1256 188 96 11 chr3 6499842 6500113 -221024465 + AluJo SINE Alu 1 294 -18 2794 130 28 77 chr3 6500113 6500411 -221024167 - L1MB8 LINE L1 -32 6146 5885 2263 63 40 27 chr3 6500411 6500712 -221023866 - AluSq SINE Alu -8 305 1 2794 130 28 77 chr3 6500712 6500955 -221023623 - L1MB8 LINE L1 -293 5885 5632 2007 151 13 0 chr3 6501061 6501360 -221023218 - AluJb SINE Alu -9 303 1 21 36 0 0 chr3 6501406 6501434 -221023144 + AT_rich Low_complexity Low_complexity 1 28 0 201 303 34 22 chr3 6501516 6501605 -221022973 - L2 LINE L2 -5 3308 3219 2209 111 0 3 chr3 6501875 6502182 -221022396 - AluSx SINE Alu -6 306 1 556 114 13 0 chr3 6502596 6502675 -221021903 - MADE1 DNA Mariner 0 80 1 2197 134 0 0 chr3 6502741 6503048 -221021530 - AluSx SINE Alu -5 307 1 970 191 182 22 chr3 6503128 6503353 -221021225 - AluJo SINE Alu -23 289 29 1840 153 0 4 chr3 6503541 6503838 -221020740 - AluSx SINE Alu 0 304 9 204 158 0 0 chr3 6503947 6503985 -221020593 + C-rich Low_complexity Low_complexity 1 38 0 1762 117 62 22 chr3 6503985 6504258 -221020320 - AluSx SINE Alu -17 295 12 207 100 0 0 chr3 6504337 6504367 -221020211 + (TCC)n Simple_repeat Simple_repeat 3 32 0 1921 139 3 3 chr3 6505325 6505613 -221018965 - AluSx SINE Alu -24 288 1 1140 123 0 0 chr3 6505980 6506135 -221018443 - AluSg/x SINE Alu -16 296 142 1602 249 83 54 chr3 6506142 6506395 -221018183 - L1MC4 LINE L1 -160 7882 7638 712 154 24 0 chr3 6506395 6506518 -221018060 - L1MA6 LINE L1 0 6300 6175 1602 249 83 54 chr3 6506518 6506926 -221017652 - L1MC4 LINE L1 -404 7638 7194 1989 155 0 3 chr3 6506926 6507230 -221017348 - AluJb SINE Alu -9 303 1 1602 249 83 54 chr3 6507230 6507326 -221017252 - L1MC4 LINE L1 -848 7194 7102 1045 73 66 20 chr3 6508533 6508684 -221015894 - L1MA1 LINE L1 0 6302 6145 1212 183 121 0 chr3 6509307 6509596 -221014982 - MER33 DNA MER1_type 0 324 1 362 244 139 45 chr3 6510578 6510786 -221013792 + MIR SINE MIR 20 261 -1 199 185 37 19 chr3 6510925 6510979 -221013599 - MIR SINE MIR -72 136 82 280 293 19 9 chr3 6511070 6511176 -221013402 + MIR SINE MIR 56 162 -100 198 103 0 0 chr3 6511251 6511280 -221013298 + (TTA)n Simple_repeat Simple_repeat 3 31 0 253 203 188 0 chr3 6511331 6511400 -221013178 + L2 LINE L2 3187 3268 -4 226 96 19 19 chr3 6512477 6512529 -221012049 + (GGA)n Simple_repeat Simple_repeat 1 52 0 245 280 86 0 chr3 6514788 6514881 -221009697 - MIR SINE MIR -125 137 37 1009 255 99 49 chr3 6516427 6516633 -221007945 - L2 LINE L2 0 3313 3119 3635 154 54 6 chr3 6516633 6517302 -221007276 + L1MB3 LINE L1 5481 6181 -2 1009 255 99 49 chr3 6517302 6517581 -221006997 - L2 LINE L2 -194 3119 2804 664 211 113 14 chr3 6518095 6518237 -221006341 + FAM SINE Alu 11 166 -19 21 82 0 0 chr3 6518557 6518606 -221005972 + AT_rich Low_complexity Low_complexity 1 49 0 708 221 129 40 chr3 6518606 6518878 -221005700 - L1MC5 LINE L1 -353 7608 7313 565 177 0 35 chr3 6518878 6518991 -221005587 - FLAM_A SINE Alu -12 130 22 228 237 17 0 chr3 6519035 6519094 -221005484 - L1MC5 LINE L1 -713 7248 7189 825 188 38 42 chr3 6519112 6519273 -221005305 - L1MC5 LINE L1 -1079 6882 6721 1709 193 0 7 chr3 6519273 6519578 -221005000 - AluJo SINE Alu -9 303 1 825 188 38 42 chr3 6519578 6519629 -221004949 - L1MC5 LINE L1 -1240 6721 6671 313 250 95 87 chr3 6519862 6519929 -221004649 - MER112 DNA MER1_type -2 254 189 1664 176 10 33 chr3 6519929 6520236 -221004342 - AluJo SINE Alu -12 300 1 313 250 95 87 chr3 6520236 6520420 -221004158 - MER112 DNA MER1_type -67 189 1 441 245 0 10 chr3 6520436 6520538 -221004040 + MER5A DNA MER1_type 9 109 -80 2305 99 0 0 chr3 6521521 6521813 -221002765 - AluSc SINE Alu -17 292 1 2210 114 0 13 chr3 6521874 6522181 -221002397 + AluSx SINE Alu 1 303 -9 240 197 45 45 chr3 6522449 6522515 -221002063 + MIR SINE MIR 112 177 -85 586 152 101 177 chr3 6522596 6522833 -221001745 + MER20 DNA MER1_type 1 219 0 264 329 71 14 chr3 6523017 6523157 -221001421 + MIR3 SINE MIR 21 168 -40 2114 137 3 0 chr3 6524269 6524568 -221000010 - AluSx SINE Alu -12 300 1 341 231 44 0 chr3 6525146 6525237 -220999341 - MIR SINE MIR -72 190 96 887 290 78 38 chr3 6525239 6525760 -220998818 + L2 LINE L2 2748 3296 -17 1764 194 61 33 chr3 6525935 6526393 -220998185 - Charlie1b DNA MER1_type 0 523 53 189 0 0 0 chr3 6527530 6527551 -220997027 + (T)n Simple_repeat Simple_repeat 1 21 0 576 314 8 47 chr3 6528159 6528392 -220996186 - MIR SINE MIR -35 227 5 1803 163 3 20 chr3 6528589 6528883 -220995695 + AluJb SINE Alu 6 294 -18 734 287 129 39 chr3 6528929 6529626 -220994952 - L2 LINE L2 -7 3265 2494 473 289 29 95 chr3 6529633 6530013 -220994565 - L2 LINE L2 0 3272 2918 686 326 9 0 chr3 6530630 6530857 -220993721 - MIR SINE MIR -24 238 10 1237 188 111 30 chr3 6531067 6531338 -220993240 - AluJo SINE Alu -17 295 3 247 303 26 0 chr3 6531424 6531500 -220993078 + L3 LINE CR1 1499 1576 -1 356 278 90 0 chr3 6531751 6531895 -220992683 - MIR SINE MIR 0 262 106 248 222 96 44 chr3 6532691 6532826 -220991752 - L1ME4a LINE L1 0 6121 5980 2050 141 0 3 chr3 6532873 6533170 -220991408 + AluSx SINE Alu 1 296 -16 535 284 37 46 chr3 6533180 6533398 -220991180 + MIR SINE MIR 47 262 0 185 380 133 0 chr3 6534781 6534894 -220989684 + MIR3 SINE MIR 44 171 -37 421 296 45 34 chr3 6536973 6537149 -220987429 - MIR SINE MIR -19 243 66 637 143 0 114 chr3 6537862 6538002 -220986576 + FLAM_A SINE Alu 5 128 -5 319 324 20 0 chr3 6538112 6538214 -220986364 - MIR3 SINE MIR -39 169 66 2284 110 0 0 chr3 6538293 6538594 -220985984 - AluSc SINE Alu -8 301 1 302 241 12 36 chr3 6539237 6539320 -220985258 + MIR SINE MIR 61 141 -121 1818 157 0 60 chr3 6540637 6540968 -220983610 + AluJb SINE Alu 1 311 -1 251 247 27 55 chr3 6541134 6541207 -220983371 - MER5B DNA MER1_type -1 177 107 23 0 0 0 chr3 6541247 6541270 -220983308 + AT_rich Low_complexity Low_complexity 1 23 0 206 191 0 0 chr3 6541831 6541873 -220982705 - MIR SINE MIR -32 230 189 730 196 124 0 chr3 6541970 6542123 -220982455 - MER5B DNA MER1_type -3 175 4 2664 126 62 5 chr3 6542383 6542821 -220981757 - L1MA8 LINE L1 0 6291 5829 243 0 0 0 chr3 6543371 6543398 -220981180 + (T)n Simple_repeat Simple_repeat 1 27 0 600 302 6 6 chr3 6543828 6544010 -220980568 + MIR SINE MIR 12 193 -69 195 212 0 0 chr3 6544074 6544107 -220980471 + L2 LINE L2 3201 3233 -39 21 36 0 0 chr3 6544135 6544163 -220980415 + AT_rich Low_complexity Low_complexity 1 28 0 252 381 138 0 chr3 6544208 6544397 -220980181 + MIR SINE MIR 46 260 -2 400 264 92 12 chr3 6545651 6545814 -220978764 - MIR SINE MIR -1 261 86 213 254 0 18 chr3 6545841 6545896 -220978682 - L2 LINE L2 -2 3270 3217 1577 178 11 3 chr3 6546257 6546544 -220978034 - AluJo SINE Alu -23 289 1 348 284 123 0 chr3 6547150 6547305 -220977273 + MIR3 SINE MIR 20 193 -15 710 226 62 5 chr3 6548892 6549087 -220975491 - MIR SINE MIR -55 207 2 1786 148 11 0 chr3 6549570 6549841 -220974737 + AluJo SINE Alu 1 274 -38 198 0 0 0 chr3 6549842 6549864 -220974714 + (CAA)n Simple_repeat Simple_repeat 1 22 0 227 209 30 15 chr3 6550116 6550183 -220974395 - MIR SINE MIR -90 172 105 420 267 86 97 chr3 6550413 6550891 -220973687 + L2 LINE L2 2591 3053 -219 825 292 5 0 chr3 6550924 6551140 -220973438 + MIR SINE MIR 24 240 -22 264 278 213 0 chr3 6551197 6551305 -220973273 + L2 LINE L2 3141 3271 -1 235 291 243 0 chr3 6551320 6551423 -220973155 - MER5A DNA MER1_type 0 189 62 2025 149 0 19 chr3 6551423 6551739 -220972839 - AluJb SINE Alu -2 310 1 320 254 150 68 chr3 6551786 6552066 -220972512 + L3 LINE CR1 1233 1535 -42 740 260 60 16 chr3 6552369 6552619 -220971959 + MIR SINE MIR 1 261 -1 1298 149 36 5 chr3 6553183 6553404 -220971174 - L1PB4 LINE L1 0 6156 5929 2574 57 0 16 chr3 6554496 6554812 -220969766 - AluY SINE Alu 0 311 1 624 274 87 20 chr3 6556172 6556471 -220968107 - L1MCa LINE L1 -2457 3672 3354 1828 188 169 2 chr3 6556516 6556941 -220967637 + MLT1D LTR MaLR 1 496 -9 397 273 71 24 chr3 6556955 6557252 -220967326 - L1MCa LINE L1 -2854 3275 2965 6386 82 28 8 chr3 6557252 6558120 -220966458 + L1PA10 LINE L1 5276 6160 -8 459 252 57 69 chr3 6558118 6558538 -220966040 - L1MCa LINE L1 -3116 3013 2599 * 368 195 73 0 chr3 6558568 6558650 -220965928 + L1ME1 LINE L1 6029 6116 -50 2187 142 87 25 chr3 6558652 6559053 -220965525 + MSTC LTR MaLR 1 426 -2 703 249 61 42 chr3 6559211 6559588 -220964990 - L1MCa LINE L1 -3649 2480 2097 249 108 0 0 chr3 6559641 6559678 -220964900 + (TG)n Simple_repeat Simple_repeat 2 38 0 1671 166 48 0 chr3 6559678 6559949 -220964629 - AluSx SINE Alu -28 284 1 274 257 117 11 chr3 6560522 6560701 -220963877 - L1MCa LINE L1 -4928 1201 1004 2269 107 0 0 chr3 6560705 6560996 -220963582 - AluSc SINE Alu -18 291 1 589 279 98 33 chr3 6561005 6561525 -220963053 - L1MCa LINE L1 -5029 1090 537 365 342 94 19 chr3 6561764 6562030 -220962548 - L1MCa LINE L1 -5776 343 58 1058 150 48 0 chr3 6562196 6562363 -220962215 + FRAM SINE Alu 2 176 0 256 23 0 47 chr3 6562503 6562546 -220962032 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 1619 102 0 0 chr3 6562609 6562814 -220961764 - AluSx SINE Alu -107 205 1 395 304 116 39 chr3 6562822 6563210 -220961368 - MLT1L LTR MaLR -3 612 195 1804 149 14 20 chr3 6563872 6564167 -220960411 - AluJo SINE Alu -19 293 1 1882 176 0 0 chr3 6564412 6564713 -220959865 + AluJb SINE Alu 1 301 -11 1979 145 3 0 chr3 6564763 6565052 -220959526 - AluJo SINE Alu -6 306 17 439 314 71 18 chr3 6565054 6565223 -220959355 + MIR SINE MIR 84 261 -1 343 344 75 0 chr3 6565405 6565565 -220959013 - MIR SINE MIR -71 191 20 21 0 0 0 chr3 6565832 6565853 -220958725 + AT_rich Low_complexity Low_complexity 1 21 0 446 338 20 7 chr3 6565984 6566135 -220958443 + MIR3 SINE MIR 7 159 -49 206 227 23 0 chr3 6566150 6566194 -220958384 - L2 LINE L2 -15 3257 3213 839 213 33 0 chr3 6566716 6566960 -220957618 + L1M1 LINE L1 3466 3717 -3848 942 55 16 8 chr3 6566960 6567088 -220957490 + AluY SINE Alu 181 309 -2 3964 206 25 16 chr3 6567088 6568088 -220956490 + L1M1 LINE L1 3711 4719 -2846 345 276 57 0 chr3 6568826 6568931 -220955647 - MIR SINE MIR -2 260 150 824 168 28 10 chr3 6568931 6569213 -220955365 - MLT1A1 LTR MaLR 0 365 3 483 198 83 0 chr3 6569214 6569310 -220955268 - MIR SINE MIR -107 155 52 2209 115 0 0 chr3 6569778 6570074 -220954504 - AluSx SINE Alu -16 296 1 2261 116 0 0 chr3 6570141 6570435 -220954143 - AluSx SINE Alu -18 294 1 1805 177 17 0 chr3 6570970 6571269 -220953309 - AluJb SINE Alu -8 304 1 2124 124 7 23 chr3 6571327 6571634 -220952944 + AluSx SINE Alu 1 302 -10 552 305 53 10 chr3 6571792 6572186 -220952392 + L1MEc LINE L1 1032 1442 -4954 554 308 108 71 chr3 6572441 6572931 -220951647 + L2 LINE L2 2805 3312 -1 2572 34 0 3 chr3 6573376 6573674 -220950904 - AluY SINE Alu -14 297 1 336 175 0 0 chr3 6576336 6576399 -220948179 + CT-rich Low_complexity Low_complexity 1 63 0 1531 176 0 22 chr3 6577502 6577769 -220946809 + AluJo SINE Alu 49 309 -3 193 292 14 69 chr3 6578484 6578556 -220946022 - L2 LINE L2 -5 3267 3200 2425 168 81 76 chr3 6578950 6579583 -220944995 - MER21B LTR ERV1 0 863 228 25 51 0 0 chr3 6579700 6579739 -220944839 + AT_rich Low_complexity Low_complexity 1 39 0 26 64 0 0 chr3 6580982 6581029 -220943549 + AT_rich Low_complexity Low_complexity 1 47 0 318 251 168 72 chr3 6581292 6581638 -220942940 - MLT1H LTR MaLR -148 401 23 197 108 27 0 chr3 6581690 6581727 -220942851 + CT-rich Low_complexity Low_complexity 3 40 0 1797 143 37 10 chr3 6581729 6582023 -220942555 - AluJo SINE Alu -10 302 1 1141 231 80 15 chr3 6582444 6582768 -220941810 + L2 LINE L2 2122 2466 -848 227 172 47 0 chr3 6582882 6582946 -220941632 - Charlie7 DNA MER1_type -1889 723 657 3548 173 6 6 chr3 6582962 6583626 -220940952 - L1MB2 LINE L1 -1 6170 5507 1452 295 142 10 chr3 6583631 6584378 -220940200 + L2 LINE L2 2447 3310 -3 375 283 29 7 chr3 6585356 6585494 -220939084 + L1ME3A LINE L1 6022 6162 -8 2045 153 3 0 chr3 6586128 6586429 -220938149 + AluJb SINE Alu 1 302 -10 343 248 94 16 chr3 6586691 6586819 -220937759 - MER5A DNA MER1_type -10 179 34 181 286 75 45 chr3 6586865 6586998 -220937580 - L2 LINE L2 -1689 1625 1489 200 254 28 56 chr3 6587156 6587227 -220937351 - MIR3 SINE MIR -14 194 126 329 309 29 37 chr3 6587304 6587440 -220937138 - L2 LINE L2 0 3272 3138 306 295 215 34 chr3 6587703 6587852 -220936726 - MER5A DNA MER1_type 0 189 14 213 209 0 23 chr3 6588870 6588913 -220935665 + (TG)n Simple_repeat Simple_repeat 1 42 0 413 287 149 37 chr3 6589478 6589666 -220934912 + MIR SINE MIR 27 235 -27 2457 64 0 0 chr3 6590318 6590616 -220933962 + AluY SINE Alu 1 298 -13 21 57 0 0 chr3 6592320 6592355 -220932223 + AT_rich Low_complexity Low_complexity 1 35 0 186 43 0 0 chr3 6594874 6594897 -220929681 + (GGAGA)n Simple_repeat Simple_repeat 1 23 0 2349 116 0 0 chr3 6595815 6596126 -220928452 - AluSx SINE Alu -1 311 1 2866 71 8 0 chr3 6596160 6596538 -220928040 - L1PA7 LINE L1 0 6154 5774 927 184 35 6 chr3 6596638 6596812 -220927766 - MER21B LTR ERV1 -684 179 1 214 318 135 56 chr3 6596827 6596953 -220927625 + L2 LINE L2 3134 3269 -3 1704 153 3 36 chr3 6597312 6597470 -220927108 - AluJb SINE Alu -21 291 146 2392 99 0 0 chr3 6597470 6597773 -220926805 - AluSq SINE Alu -10 303 1 1704 153 3 36 chr3 6597773 6597915 -220926663 - AluJb SINE Alu -166 146 1 362 219 58 2 chr3 6598005 6598108 -220926470 - MIR SINE MIR -56 152 42 183 200 0 0 chr3 6598177 6598207 -220926371 + L2 LINE L2 3258 3287 -26 228 94 19 57 chr3 6598351 6598404 -220926174 - L2 LINE L2 -30 3242 3192 299 228 44 88 chr3 6599092 6599206 -220925372 - MIR SINE MIR -60 148 40 577 157 9 0 chr3 6599385 6599493 -220925085 + L1MC1 LINE L1 5752 5860 -473 303 286 25 25 chr3 6599509 6599628 -220924950 - L1MC/D LINE L1 -1991 5817 5699 694 307 95 4 chr3 6599636 6599867 -220924711 - MIR SINE MIR -10 252 1 3530 154 10 56 chr3 6599978 6600707 -220923871 - L1MC1 LINE L1 -3 6330 5636 201 264 38 0 chr3 6600805 6600858 -220923720 - MIR SINE MIR -41 221 167 2851 74 0 6 chr3 6600978 6601344 -220923234 - THE1B LTR MaLR 0 364 1 246 250 70 35 chr3 6602093 6602265 -220922313 + HAL1 LINE L1 1974 2151 -356 252 322 84 0 chr3 6602616 6602855 -220921723 - L1MC5 LINE L1 -66 7895 7637 706 168 26 0 chr3 6602910 6603023 -220921555 - FLAM_A SINE Alu -14 119 4 451 274 160 9 chr3 6603534 6603753 -220920825 - MIR SINE MIR -6 256 5 947 207 84 0 chr3 6603806 6604009 -220920569 + MIR SINE MIR 12 231 -31 1017 99 215 11 chr3 6605864 6605960 -220918618 + MER30 DNA MER1_type 1 76 -154 225 0 0 0 chr3 6605960 6605985 -220918593 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1017 99 215 11 chr3 6605985 6606079 -220918499 + MER30 DNA MER1_type 76 230 0 23 0 0 0 chr3 6606268 6606291 -220918287 + AT_rich Low_complexity Low_complexity 1 23 0 969 280 37 47 chr3 6606594 6607023 -220917555 - L2 LINE L2 -3 3310 2886 1885 150 7 3 chr3 6607110 6607396 -220917182 + AluJb SINE Alu 11 297 -15 1373 198 95 29 chr3 6607705 6607806 -220916772 - MLT1C LTR MaLR -2 465 372 2389 88 3 0 chr3 6607806 6608113 -220916465 - AluSx SINE Alu -4 308 1 1373 198 95 29 chr3 6608113 6608389 -220916189 - MLT1C LTR MaLR -95 372 63 1204 180 214 0 chr3 6608385 6608679 -220915899 + MLT1A1 LTR MaLR 9 365 0 * 251 167 0 0 chr3 6608679 6608721 -220915857 - MLT1C LTR MaLR -321 69 28 263 0 0 0 chr3 6608740 6608771 -220915807 - U7 snRNA snRNA -31 32 2 270 319 14 21 chr3 6608949 6609090 -220915488 - MIR SINE MIR -10 252 113 372 43 0 0 chr3 6610470 6610516 -220914062 + (CA)n Simple_repeat Simple_repeat 2 47 0 741 251 64 0 chr3 6610850 6611053 -220913525 + MIR SINE MIR 41 256 -6 1803 159 14 7 chr3 6611476 6611772 -220912806 - AluJb SINE Alu -10 302 5 1547 137 115 46 chr3 6612657 6613001 -220911577 - MSTA LTR MaLR 0 428 3 2179 119 0 0 chr3 6613158 6613460 -220911118 + AluSx SINE Alu 3 304 -8 2923 103 2 10 chr3 6613495 6613902 -220910676 - MER4A LTR ERV1 0 664 261 670 102 0 10 chr3 6613902 6614000 -220910578 - MER4A LTR ERV1 -566 98 2 825 225 56 70 chr3 6614332 6614658 -220909920 - L1ME3 LINE L1 -2 6164 5858 1097 171 0 0 chr3 6614663 6614833 -220909745 + AluJb SINE Alu 129 298 -14 258 200 154 0 chr3 6614833 6614898 -220909680 - L1ME3 LINE L1 -293 5869 5795 559 329 27 4 chr3 6614949 6615174 -220909404 - MIR SINE MIR -1 261 32 416 208 40 94 chr3 6615490 6615639 -220908939 - LTR67 LTR ERVL -4 553 413 2383 97 3 3 chr3 6615917 6616228 -220908350 - AluSq SINE Alu -2 311 1 194 310 35 0 chr3 6616810 6616868 -220907710 - L2 LINE L2 -64 3249 3190 326 273 78 19 chr3 6617338 6617492 -220907086 + MLT1J2 LTR MaLR 1 163 -287 1162 204 25 116 chr3 6617762 6618160 -220906418 - MLT1A1 LTR MaLR 0 365 4 1568 205 0 16 chr3 6618253 6618556 -220906022 + AluJb SINE Alu 1 298 -14 1392 266 133 61 chr3 6618557 6618597 -220905981 - HAL1 LINE L1 -6 2501 2465 1038 137 28 11 chr3 6618597 6618779 -220905799 + L1MB5 LINE L1 5981 6165 -9 1392 266 133 61 chr3 6618779 6620024 -220904554 - HAL1 LINE L1 -42 2465 1123 231 234 9 27 chr3 6620039 6620150 -220904428 + C-rich Low_complexity Low_complexity 3 111 0 813 168 4 0 chr3 6620164 6620411 -220904167 + CT-rich Low_complexity Low_complexity 1 248 0 359 280 40 30 chr3 6620585 6620685 -220903893 - MER58 DNA MER1_type -228 113 13 412 309 129 36 chr3 6620685 6621073 -220903505 - HAL1 LINE L1 -1845 662 239 180 0 0 0 chr3 6621232 6621252 -220903326 + (T)n Simple_repeat Simple_repeat 1 20 0 287 256 31 70 chr3 6621542 6621671 -220902907 + L2 LINE L2 2287 2410 -904 2433 126 67 12 chr3 6621683 6622089 -220902489 - MSTA LTR MaLR 0 428 1 409 328 95 25 chr3 6622106 6622661 -220901917 + L2 LINE L2 2695 3210 -103 2448 82 0 3 chr3 6622661 6622964 -220901614 - AluSc SINE Alu -7 302 1 2067 89 33 0 chr3 6622969 6623264 -220901314 - AluSc SINE Alu 0 304 1 264 243 126 9 chr3 6623388 6623499 -220901079 - L2 LINE L2 -2 3311 3188 2414 89 0 3 chr3 6624943 6625245 -220899333 + AluSx SINE Alu 6 306 -6 2556 60 0 3 chr3 6626106 6626408 -220898170 - AluY SINE Alu -10 301 1 954 131 15 0 chr3 6626575 6626712 -220897866 + FAM SINE Alu 32 170 -15 225 0 0 0 chr3 6626736 6626761 -220897817 + (TG)n Simple_repeat Simple_repeat 2 26 0 860 248 148 18 chr3 6626863 6627254 -220897324 - Charlie7 DNA MER1_type -1896 716 275 2085 130 0 7 chr3 6627379 6627672 -220896906 - AluSx SINE Alu -21 291 1 1318 144 9 5 chr3 6627828 6628043 -220896535 + AluSg/x SINE Alu 95 310 -2 808 298 25 0 chr3 6628676 6628918 -220895660 + MIR SINE MIR 13 260 -2 203 288 38 0 chr3 6628963 6629043 -220895535 + MIR SINE MIR 66 148 -114 229 331 0 32 chr3 6629224 6629348 -220895230 + L2 LINE L2 3138 3257 -15 290 0 75 0 chr3 6629739 6629779 -220894799 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 701 304 77 23 chr3 6629779 6630170 -220894408 + L2 LINE L2 2902 3313 0 720 237 179 24 chr3 6630531 6630860 -220893718 - MER20B DNA MER1_type -6 777 398 544 187 19 0 chr3 6630867 6630974 -220893604 + Ricksha DNA DNA 11 119 -1927 4348 127 78 45 chr3 6631001 6631113 -220893465 + Ricksha DNA DNA 2350 2457 -789 2047 113 3 7 chr3 6631113 6631438 -220893140 - AluSx SINE Alu 0 324 1 4348 127 78 45 chr3 6631438 6632186 -220892392 + Ricksha DNA DNA 2457 3239 -7 453 294 5 33 chr3 6632192 6632376 -220892202 - MER20B DNA MER1_type -373 410 232 699 186 8 8 chr3 6632378 6632502 -220892076 - AluJb SINE Alu -52 260 137 422 360 23 6 chr3 6632513 6632685 -220891893 - MER20B DNA MER1_type -554 229 55 693 270 60 36 chr3 6632908 6633241 -220891337 - MER102b DNA MER1_type 0 341 1 2257 105 7 3 chr3 6633481 6633787 -220890791 - AluSc SINE Alu -2 307 1 1731 158 14 11 chr3 6634766 6635051 -220889527 - AluJb SINE Alu -14 298 13 2077 103 0 15 chr3 6635322 6635594 -220888984 - AluSq SINE Alu -45 268 1 334 261 98 83 chr3 6635598 6635862 -220888716 - L1MC/D LINE L1 -441 5680 5559 2347 69 0 16 chr3 6635893 6636196 -220888382 - AluY SINE Alu -13 298 1 219 125 0 0 chr3 6636413 6636453 -220888125 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 1896 82 58 0 chr3 6636455 6636698 -220887880 - AluSp SINE Alu -56 257 1 2207 92 14 0 chr3 6636997 6637280 -220887298 - AluSx SINE Alu -25 287 1 711 163 163 0 chr3 6637281 6637422 -220887156 - L1PA16 LINE L1 -127 6039 5876 252 308 158 0 chr3 6637906 6638039 -220886539 + MER5B DNA MER1_type 1 154 -24 308 209 15 0 chr3 6638134 6638201 -220886377 - MER5A DNA MER1_type -96 93 26 2203 114 10 0 chr3 6638214 6638513 -220886065 - AluSx SINE Alu -10 302 1 962 303 98 18 chr3 6639368 6639919 -220884659 + L2 LINE L2 2002 2596 -718 675 175 9 0 chr3 6639985 6640099 -220884479 + FLAM_A SINE Alu 1 115 -18 584 238 130 11 chr3 6640141 6640326 -220884252 + MER112 DNA MER1_type 54 260 0 355 259 18 36 chr3 6640342 6640454 -220884124 + MER5A DNA MER1_type 17 126 -63 230 257 18 62 chr3 6640483 6640596 -220883982 + L2 LINE L2 2599 2706 -608 244 262 16 0 chr3 6640735 6640796 -220883782 + MER5B DNA MER1_type 51 112 -66 945 292 41 62 chr3 6640865 6641331 -220883247 + L2 LINE L2 2856 3311 -2 565 181 124 0 chr3 6641451 6641642 -220882936 - FLAM_A SINE Alu 0 204 1 5934 73 11 14 chr3 6641662 6642456 -220882122 - L1PA14 LINE L1 -1 6160 5369 511 284 116 71 chr3 6643461 6643925 -220880653 - MLT1K LTR MaLR -99 489 5 764 278 48 44 chr3 6645117 6645387 -220879191 + LTR16A1 LTR ERVL 187 457 0 680 249 103 80 chr3 6645387 6645818 -220878760 - MLT1J LTR MaLR -70 441 1 374 280 99 33 chr3 6645874 6646056 -220878522 + MIR SINE MIR 3 196 -66 974 311 80 18 chr3 6646072 6646397 -220878181 - MSTA LTR MaLR 0 428 1 209 264 92 0 chr3 6646615 6646702 -220877876 - L2 LINE L2 -1366 1948 1854 534 306 17 69 chr3 6647870 6648158 -220876420 - Charlie8 DNA MER1_type -2144 273 1 1972 147 0 7 chr3 6649185 6649477 -220875101 + AluJb SINE Alu 1 290 -22 321 120 67 53 chr3 6649545 6649620 -220874958 - MER103 DNA DNA -76 90 15 215 301 137 0 chr3 6649776 6649849 -220874729 - L3 LINE CR1 -469 1108 1026 294 326 7 15 chr3 6649975 6650110 -220874468 - MIR SINE MIR -73 189 56 811 294 37 25 chr3 6650132 6650455 -220874123 + MER102b DNA MER1_type 9 335 -6 589 281 50 43 chr3 6650713 6651016 -220873562 - L1ME1 LINE L1 -53 6113 5809 267 93 0 0 chr3 6651332 6651375 -220873203 + (TG)n Simple_repeat Simple_repeat 2 44 0 4302 185 42 34 chr3 6651948 6652084 -220872494 + L1MB7 LINE L1 4825 4959 -1225 1923 125 68 0 chr3 6652084 6652363 -220872215 + AluJb SINE Alu 1 298 -14 4302 185 42 34 chr3 6652363 6653101 -220871477 + L1MB7 LINE L1 4959 5713 -471 1634 179 7 30 chr3 6653101 6653397 -220871181 + AluJb SINE Alu 17 305 -7 4302 185 42 34 chr3 6653397 6653857 -220870721 + L1MB7 LINE L1 5713 6168 -16 1037 96 32 26 chr3 6654075 6654231 -220870347 - L1PA16 LINE L1 0 6166 6010 2170 105 0 3 chr3 6654264 6654558 -220870020 - AluSc SINE Alu 0 309 17 2665 127 39 18 chr3 6654558 6655000 -220869578 - L1PA16 LINE L1 -381 5785 5335 1123 230 125 71 chr3 6655681 6655818 -220868760 + L1MC4 LINE L1 7385 7513 -529 1737 122 68 32 chr3 6655818 6656097 -220868481 - AluSg SINE Alu -21 289 1 1123 230 125 71 chr3 6656097 6656581 -220867997 + L1MC4 LINE L1 7513 8040 -2 2817 100 41 30 chr3 6657233 6657693 -220866885 - MER4C LTR ERV1 0 465 1 447 146 361 8 chr3 6658019 6658149 -220866429 + MER5A DNA MER1_type 14 189 0 301 307 0 0 chr3 6658176 6658264 -220866314 + MER5A DNA MER1_type 1 88 -101 3851 151 23 33 chr3 6658301 6659032 -220865546 - LTR8A LTR ERV1 -3 724 1 215 206 16 48 chr3 6659085 6659148 -220865430 + MER5B DNA MER1_type 116 176 -2 930 198 35 30 chr3 6659370 6659567 -220865011 + MER20 DNA MER1_type 4 201 -18 2243 110 7 7 chr3 6659567 6659877 -220864701 + AluSx SINE Alu 3 312 0 351 0 0 0 chr3 6659898 6659937 -220864641 + (TA)n Simple_repeat Simple_repeat 1 39 0 554 225 23 0 chr3 6661673 6661846 -220862732 + CT-rich Low_complexity Low_complexity 4 180 0 1797 108 116 0 chr3 6662198 6662456 -220862122 + AluSg SINE Alu 1 288 -22 222 274 0 0 chr3 6663661 6663712 -220860866 - MIR SINE MIR -17 245 195 1559 248 86 21 chr3 6663713 6664150 -220860428 + MLT1G1 LTR MaLR 13 436 -106 650 186 68 37 chr3 6664224 6664385 -220860193 - MIR SINE MIR -59 203 38 296 259 69 17 chr3 6664752 6664868 -220859710 - MIR SINE MIR -50 212 91 1013 198 23 14 chr3 6665963 6666180 -220858398 - MER20 DNA MER1_type 0 219 1 327 300 92 0 chr3 6666826 6666946 -220857632 + MIR SINE MIR 36 166 -96 608 253 104 0 chr3 6666957 6667139 -220857439 - L1MC4 LINE L1 -1323 6719 6519 30 0 0 0 chr3 6667356 6667386 -220857192 + AT_rich Low_complexity Low_complexity 1 30 0 433 278 124 27 chr3 6667740 6668039 -220856539 - L1ME LINE L1 -471 5699 5372 354 273 124 36 chr3 6668446 6668640 -220855938 - Tigger8 DNA MER2_type -399 267 57 2319 76 0 14 chr3 6669185 6669498 -220855080 - AluY SINE Alu 0 311 1 412 264 175 41 chr3 6669530 6669776 -220854802 - L2 LINE L2 -2 3311 3033 256 263 0 85 chr3 6670990 6671108 -220853470 - L1MC5 LINE L1 -48 7913 7806 237 191 59 29 chr3 6671527 6671595 -220852983 - MIR SINE MIR -113 149 80 1687 197 0 16 chr3 6671676 6671985 -220852593 + AluJo SINE Alu 1 304 -8 836 278 107 41 chr3 6672803 6673195 -220851383 - L2 LINE L2 -1 3312 2895 466 274 42 42 chr3 6673198 6673505 -220851073 - L2 LINE L2 -1474 1840 1534 180 125 0 0 chr3 6673904 6673936 -220850642 + (TTTTTA)n Simple_repeat Simple_repeat 4 35 0 195 330 174 0 chr3 6674090 6674199 -220850379 - L2 LINE L2 -2 3311 3184 2724 179 24 12 chr3 6674859 6675361 -220849217 - MLT2B2 LTR ERVL -7 508 1 237 33 0 0 chr3 6677209 6677239 -220847339 + (GA)n Simple_repeat Simple_repeat 1 30 0 306 0 0 0 chr3 6677241 6677275 -220847303 + (TG)n Simple_repeat Simple_repeat 2 35 0 468 266 122 53 chr3 6677663 6678102 -220846476 - MLT1H1 LTR MaLR -13 542 48 719 215 0 0 chr3 6678524 6678645 -220845933 + FLAM_A SINE Alu 1 121 -12 229 309 37 0 chr3 6680089 6680170 -220844408 + MIR SINE MIR 3 86 -176 234 259 71 0 chr3 6681444 6681529 -220843049 - MIR SINE MIR -69 193 103 397 283 29 35 chr3 6681618 6681791 -220842787 - MIR SINE MIR -12 250 79 501 248 55 3 chr3 6682699 6682893 -220841685 + MER58 DNA MER1_type 1 2418 -2 660 297 14 5 chr3 6682933 6683145 -220841433 - MIR SINE MIR -41 221 8 205 159 91 0 chr3 6683404 6683448 -220841130 - MIR SINE MIR -111 151 104 634 164 102 8 chr3 6683671 6683799 -220840779 - FLAM_C SINE Alu -2 141 2 504 325 35 4 chr3 6684696 6684927 -220839651 - L1MC4a LINE L1 -1888 5920 5683 1259 169 49 4 chr3 6684999 6685224 -220839354 + MER46A DNA MER2_type 2 236 0 1399 237 132 56 chr3 6685260 6685611 -220838967 + L1ME3 LINE L1 4943 5266 -896 2093 134 7 0 chr3 6685611 6685902 -220838676 + AluSx SINE Alu 1 293 -19 1399 237 132 56 chr3 6685902 6686589 -220837989 + L1ME3 LINE L1 5266 6162 0 1653 147 45 18 chr3 6687493 6687779 -220836799 + AluJo SINE Alu 8 301 -11 210 323 21 0 chr3 6687849 6687945 -220836633 + MIR SINE MIR 100 197 -65 495 331 18 0 chr3 6687953 6688122 -220836456 - MIR SINE MIR -2 260 89 2236 101 3 13 chr3 6688455 6688753 -220835825 + AluSp SINE Alu 1 295 -18 266 206 32 58 chr3 6689907 6690062 -220834516 + (TTATA)n Simple_repeat Simple_repeat 4 154 0 1823 173 49 0 chr3 6690088 6690418 -220834160 - MER7A DNA MER2_type 0 346 3 393 275 123 34 chr3 6690490 6690726 -220833852 - L1MC4a LINE L1 -1773 6035 5779 442 269 31 8 chr3 6690809 6690939 -220833639 - L1MC4a LINE L1 -2280 5528 5396 527 277 98 94 chr3 6691003 6691717 -220832861 - L1ME3 LINE L1 0 6170 5451 2437 179 37 16 chr3 6691717 6692226 -220832352 - L1MB8 LINE L1 -1 6177 5658 527 277 98 94 chr3 6692226 6692362 -220832216 - L1ME3 LINE L1 -719 5451 5317 303 250 214 31 chr3 6692413 6692609 -220831969 - L1ME3 LINE L1 -905 5241 5010 342 0 0 0 chr3 6692932 6692970 -220831608 + (TG)n Simple_repeat Simple_repeat 2 39 0 2265 132 0 0 chr3 6693064 6693368 -220831210 - AluSx SINE Alu -8 304 1 242 262 16 0 chr3 6693805 6693866 -220830712 - HsTC2 DNA Tc2 -1824 74 13 736 243 77 0 chr3 6694106 6694275 -220830303 - MER58A DNA MER1_type -16 208 27 1924 152 0 26 chr3 6694685 6694987 -220829591 + AluSx SINE Alu 1 294 -18 257 258 0 15 chr3 6695844 6695910 -220828668 + MIR SINE MIR 190 254 -8 215 291 104 97 chr3 6695916 6696050 -220828528 + L2 LINE L2 3138 3272 0 2375 132 31 14 chr3 6696329 6696686 -220827892 - THE1B LTR MaLR 0 364 2 282 275 99 0 chr3 6696897 6696988 -220827590 + MIR SINE MIR 142 241 -21 215 327 114 27 chr3 6697220 6697440 -220827138 + MIR SINE MIR 20 258 -4 21 57 0 0 chr3 6697468 6697503 -220827075 + AT_rich Low_complexity Low_complexity 1 35 0 508 260 68 40 chr3 6698011 6698188 -220826390 - MIR3 SINE MIR -13 195 14 196 347 0 32 chr3 6698656 6698751 -220825827 - MIR3 SINE MIR -107 101 10 345 198 146 0 chr3 6698832 6698928 -220825650 - MER103 DNA DNA -51 115 6 1372 162 81 56 chr3 6699607 6699749 -220824829 + L1PA16 LINE L1 5876 6013 -153 2422 77 3 0 chr3 6699749 6700046 -220824532 + AluSp SINE Alu 1 298 -15 1372 162 81 56 chr3 6700046 6700187 -220824391 + L1PA16 LINE L1 6013 6166 0 2056 211 2 29 chr3 6700852 6701297 -220823281 - L1MD3 LINE L1 -9 7986 7554 243 223 134 45 chr3 6702388 6702500 -220822078 + MER113 DNA MER1_type? 218 339 -182 692 201 71 33 chr3 6702622 6702806 -220821772 + MIR SINE MIR 13 203 -59 1571 246 86 21 chr3 6702880 6703317 -220821261 - MLT1G1 LTR MaLR -106 436 13 260 294 0 0 chr3 6703318 6703386 -220821192 + MIR SINE MIR 195 262 0 197 290 17 137 chr3 6703496 6703796 -220820782 - L2 LINE L2 -46 3226 2963 315 203 106 57 chr3 6703824 6703947 -220820631 + MER113 DNA MER1_type? 218 346 -175 321 219 73 57 chr3 6705414 6705537 -220819041 - L1ME4a LINE L1 -11 6110 5986 240 35 0 0 chr3 6706277 6706306 -220818272 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 2305 111 3 0 chr3 6706549 6706855 -220817723 + AluSx SINE Alu 1 307 -5 207 0 0 0 chr3 6707602 6707625 -220816953 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 653 277 72 44 chr3 6711404 6711653 -220812925 - MIR SINE MIR -1 261 6 2203 99 0 0 chr3 6712007 6712299 -220812279 + AluSx SINE Alu 1 292 -20 28 0 0 0 chr3 6712451 6712479 -220812099 + AT_rich Low_complexity Low_complexity 1 28 0 291 283 22 43 chr3 6714976 6715068 -220809510 - MIR SINE MIR -79 129 40 552 202 11 0 chr3 6716412 6716514 -220808064 - L1ME3 LINE L1 -55 6107 5998 357 275 191 0 chr3 6716550 6716681 -220807897 - L2 LINE L2 0 3272 3117 258 56 0 0 chr3 6717544 6717580 -220806998 + (TA)n Simple_repeat Simple_repeat 2 37 0 242 89 44 0 chr3 6717602 6717647 -220806931 + LTR66 LTR ERVL 394 440 -170 332 366 12 30 chr3 6719274 6719303 -220805275 - MIR3 SINE MIR -25 183 155 2082 120 3 0 chr3 6719303 6719612 -220804966 + AluSx SINE Alu 1 310 -2 332 366 12 30 chr3 6719612 6719746 -220804832 - MIR3 SINE MIR -53 155 23 30 59 0 0 chr3 6719877 6719928 -220804650 + AT_rich Low_complexity Low_complexity 1 51 0 21 57 0 0 chr3 6722386 6722421 -220802157 + AT_rich Low_complexity Low_complexity 1 35 0 1999 126 7 0 chr3 6722473 6722766 -220801812 - AluSx SINE Alu -17 295 1 26 0 0 0 chr3 6723930 6723956 -220800622 + AT_rich Low_complexity Low_complexity 1 26 0 1698 132 28 28 chr3 6724023 6724312 -220800266 - AluJo SINE Alu -23 289 1 364 300 111 37 chr3 6724316 6724506 -220800072 - L1ME3 LINE L1 -122 5999 5796 289 235 41 20 chr3 6724568 6724666 -220799912 - L1ME3 LINE L1 -466 5655 5556 236 350 12 0 chr3 6724750 6724830 -220799748 - MIR SINE MIR -113 149 69 2150 76 0 10 chr3 6724887 6725176 -220799402 - L1MA1 LINE L1 -1 6301 6016 619 242 124 0 chr3 6725621 6725774 -220798804 + MIR SINE MIR 66 237 -25 183 42 0 0 chr3 6726653 6726677 -220797901 + (A)n Simple_repeat Simple_repeat 1 24 0 186 43 0 0 chr3 6726712 6726735 -220797843 + (TG)n Simple_repeat Simple_repeat 2 24 0 441 0 0 0 chr3 6726808 6726857 -220797721 + (TG)n Simple_repeat Simple_repeat 2 50 0 436 241 20 79 chr3 6728714 6728917 -220795661 - L1MC5 LINE L1 -34 7927 7737 374 298 38 15 chr3 6730027 6730158 -220794420 - MIR SINE MIR -12 250 117 186 227 0 91 chr3 6730836 6730902 -220793676 - L2 LINE L2 -216 3056 2997 193 211 193 0 chr3 6731073 6731130 -220793448 + L2 LINE L2 3204 3271 -1 384 293 173 42 chr3 6731370 6731561 -220793017 + MIR SINE MIR 44 259 -3 311 259 0 0 chr3 6732041 6732099 -220792479 + L2 LINE L2 3215 3272 0 328 85 0 0 chr3 6732646 6732693 -220791885 - L1MB7 LINE L1 -8 6176 6130 537 323 12 6 chr3 6732767 6732934 -220791644 - MER91A DNA MER1_type -27 169 2 455 253 58 93 chr3 6734184 6734331 -220790247 + L1ME3 LINE L1 5946 6084 -78 2074 132 21 6 chr3 6734331 6734664 -220789914 + L1PA13 LINE L1 5826 6163 0 455 253 58 93 chr3 6734664 6734741 -220789837 + L1ME3 LINE L1 6084 6162 0 473 178 0 0 chr3 6735900 6735973 -220788605 - MER2 DNA MER2_type 0 345 273 185 294 39 0 chr3 6735992 6736043 -220788535 - MIR SINE MIR -133 129 77 1112 269 128 39 chr3 6736096 6736622 -220787956 - MLT1H1 LTR MaLR -5 548 1 408 247 33 60 chr3 6738611 6738761 -220785817 + MIR SINE MIR 28 173 -89 764 174 0 0 chr3 6739073 6739194 -220785384 - FLAM_A SINE Alu -11 122 2 31 0 0 0 chr3 6739197 6739228 -220785350 + AT_rich Low_complexity Low_complexity 1 31 0 369 43 0 0 chr3 6739442 6739489 -220785089 - MADE1 DNA Mariner 0 80 34 185 105 0 53 chr3 6739590 6739628 -220784950 + (TTTCC)n Simple_repeat Simple_repeat 5 40 0 2028 91 0 4 chr3 6740252 6740567 -220784011 - AluSx SINE Alu 0 320 7 818 250 18 14 chr3 6740875 6741095 -220783483 + MER58A DNA MER1_type 1 221 -3 792 181 11 27 chr3 6741298 6741649 -220782929 + CT-rich Low_complexity Low_complexity 1 345 0 396 316 100 40 chr3 6742007 6742406 -220782172 + L2 LINE L2 2107 2529 -785 259 341 12 0 chr3 6742463 6742548 -220782030 - MIR SINE MIR -169 93 8 184 222 44 0 chr3 6742595 6742640 -220781938 + L2 LINE L2 2601 2647 -667 216 267 78 43 chr3 6743038 6743154 -220781424 + L2 LINE L2 3150 3269 -3 203 304 11 76 chr3 6743162 6743254 -220781324 + MIR SINE MIR 158 243 -19 371 313 9 0 chr3 6743701 6743816 -220780762 - MIR SINE MIR -92 170 55 412 195 114 57 chr3 6744547 6744670 -220779908 - MIR3 SINE MIR -69 139 10 189 107 0 0 chr3 6747165 6747193 -220777385 + (TTTC)n Simple_repeat Simple_repeat 2 29 0 23 0 0 0 chr3 6748575 6748598 -220775980 + AT_rich Low_complexity Low_complexity 1 23 0 608 233 0 0 chr3 6749120 6749236 -220775342 - FLAM_A SINE Alu -17 116 1 531 282 62 66 chr3 6749254 6749559 -220775019 - L2 LINE L2 -19 3253 2950 240 289 72 40 chr3 6750247 6750399 -220774179 - MIR SINE MIR -34 228 72 189 0 0 0 chr3 6751608 6751629 -220772949 + (T)n Simple_repeat Simple_repeat 1 21 0 815 129 0 0 chr3 6751843 6751967 -220772611 - FLAM_C SINE Alu -9 134 11 2671 83 0 0 chr3 6752763 6753114 -220771464 - L1PA14 LINE L1 0 6161 5811 427 326 7 28 chr3 6753467 6753608 -220770970 - MIR3 SINE MIR -61 147 10 810 241 82 0 chr3 6753991 6754211 -220770367 + MIR SINE MIR 8 245 -17 471 298 7 28 chr3 6755158 6755299 -220769279 + MIR3 SINE MIR 10 147 -61 403 163 12 12 chr3 6755933 6756013 -220768565 + MIR3 SINE MIR 82 161 -47 229 277 11 96 chr3 6756556 6756650 -220767928 + MIR3 SINE MIR 79 167 -41 519 217 32 106 chr3 6756870 6756954 -220767624 - L1ME2 LINE L1 -9 6155 6066 1804 194 77 58 chr3 6756954 6757450 -220767128 - MLT1D LTR MaLR 0 505 1 519 217 32 106 chr3 6757450 6757571 -220767007 - L1ME2 LINE L1 -98 6066 5964 2342 132 71 0 chr3 6757571 6757964 -220766614 - L1PA16 LINE L1 -5 6161 5741 252 186 0 34 chr3 6758609 6758668 -220765910 - FLAM_A SINE Alu -2 131 75 588 224 109 21 chr3 6758754 6758946 -220765632 - MIR SINE MIR -53 209 1 357 339 0 0 chr3 6759088 6759197 -220765381 - MIR SINE MIR -147 115 7 4086 84 20 32 chr3 6759210 6759807 -220764771 + L1PA10 LINE L1 5576 6165 -3 513 331 118 10 chr3 6760816 6761130 -220763448 - L2 LINE L2 0 3313 2966 705 118 0 0 chr3 6761377 6761487 -220763091 + (TGGA)n Simple_repeat Simple_repeat 1 110 0 207 0 0 0 chr3 6761503 6761526 -220763052 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 918 155 94 75 chr3 6763657 6763870 -220760708 - MER20 DNA MER1_type -2 217 1 262 271 0 0 chr3 6763900 6763959 -220760619 - MIR SINE MIR 0 262 204 1205 168 72 50 chr3 6763983 6764245 -220760333 - AluJo SINE Alu -38 274 7 741 288 14 9 chr3 6764248 6764463 -220760115 - MIR SINE MIR -42 220 5 289 247 39 13 chr3 6764461 6764538 -220760040 + MIR SINE MIR 156 234 -28 * 234 162 0 0 chr3 6764629 6764666 -220759912 - MIR SINE MIR -59 149 113 2005 115 34 0 chr3 6765337 6765633 -220758945 - AluSx SINE Alu -1 311 6 187 209 0 0 chr3 6765894 6765937 -220758641 + L2 LINE L2 3270 3312 -1 358 219 289 0 chr3 6766098 6766212 -220758366 - MIR SINE MIR -108 154 8 256 284 68 0 chr3 6767701 6767775 -220756803 - L2 LINE L2 -186 3086 3008 185 319 0 0 chr3 6769435 6769504 -220755074 - L2 LINE L2 -9 3263 3195 570 279 132 6 chr3 6770602 6770886 -220753692 - L1MC4a LINE L1 -316 5805 5561 2032 99 31 7 chr3 6772516 6772808 -220751770 - AluSg SINE Alu -11 299 1 493 72 14 0 chr3 6776248 6776317 -220748261 + MADE1 DNA Mariner 1 70 -10 441 39 0 0 chr3 6776311 6776363 -220748215 - MADE1 DNA Mariner -27 53 2 * 630 262 126 19 chr3 6776456 6776670 -220747908 + MIR SINE MIR 14 250 -12 392 241 66 99 chr3 6778049 6778142 -220746436 + MIR SINE MIR 52 147 -115 1836 147 3 3 chr3 6778142 6778428 -220746150 + AluJb SINE Alu 4 289 -23 392 241 66 99 chr3 6778428 6778546 -220746032 + MIR SINE MIR 147 256 -6 300 230 40 14 chr3 6778873 6778947 -220745631 + MER117 DNA MER1_type 44 119 -78 366 302 82 80 chr3 6780438 6781002 -220743576 - L2 LINE L2 0 3272 2702 22 0 0 0 chr3 6781005 6781027 -220743551 + AT_rich Low_complexity Low_complexity 1 22 0 1977 106 10 51 chr3 6781037 6781348 -220743230 + AluSx SINE Alu 1 298 -14 343 250 92 58 chr3 6781595 6781715 -220742863 - MIR SINE MIR -114 148 25 378 327 31 25 chr3 6782099 6782258 -220742320 - MIR3 SINE MIR -13 195 36 751 237 72 10 chr3 6783423 6783617 -220740961 - MER3 DNA MER1_type -1 208 3 701 117 0 0 chr3 6783701 6783804 -220740774 + AluSg/x SINE Alu 208 310 -2 23 0 0 0 chr3 6783828 6783851 -220740727 + AT_rich Low_complexity Low_complexity 1 23 0 1862 123 6 43 chr3 6783851 6784175 -220740403 + AluSx SINE Alu 1 312 0 2225 110 0 0 chr3 6786046 6786356 -220738222 - AluSg SINE Alu 0 310 1 277 263 140 9 chr3 6786651 6786765 -220737813 + MIR3 SINE MIR 37 165 -43 2015 146 33 9 chr3 6787721 6788050 -220736528 - MER1B DNA MER1_type 0 337 1 1809 190 103 38 chr3 6788313 6788787 -220735791 - MLT1D LTR MaLR 0 505 1 2238 203 67 54 chr3 6788796 6789352 -220735226 - MLT1F1 LTR MaLR -4 563 1 285 216 135 0 chr3 6789842 6789916 -220734662 - L1MC5 LINE L1 -70 7891 7808 303 215 114 25 chr3 6790194 6790273 -220734305 + MIR3 SINE MIR 114 199 -9 491 329 7 0 chr3 6791874 6792011 -220732567 - MIR3 SINE MIR -41 167 30 223 309 0 37 chr3 6793162 6793243 -220731335 + MIR SINE MIR 31 108 -100 716 186 127 56 chr3 6794107 6794446 -220730132 - L1MC5 LINE L1 -34 7927 7565 3565 199 36 26 chr3 6794596 6795527 -220729051 + L1ME1 LINE L1 5196 6134 -32 233 304 180 12 chr3 6795528 6795666 -220728912 + MIR SINE MIR 7 164 -44 337 305 108 89 chr3 6796432 6796701 -220727877 - L2 LINE L2 -85 3187 2914 1946 141 0 20 chr3 6797920 6798247 -220726331 + AluSx SINE Alu 1 312 0 537 252 41 0 chr3 6798528 6798675 -220725903 + MER103 DNA DNA 2 154 -12 216 227 0 30 chr3 6798936 6798979 -220725599 + GA-rich Low_complexity Low_complexity 3 45 -21 1814 143 10 22 chr3 6798979 6799293 -220725285 + AluSx SINE Alu 1 310 -2 216 227 0 30 chr3 6799293 6799315 -220725263 + GA-rich Low_complexity Low_complexity 45 66 0 1707 142 184 6 chr3 6799383 6799742 -220724836 - MSTA LTR MaLR -2 426 4 2043 106 3 13 chr3 6800308 6800610 -220723968 - AluSx SINE Alu -13 299 1 898 289 100 22 chr3 6801504 6801913 -220722665 - MLT1K LTR MaLR -4 584 144 423 288 42 8 chr3 6803854 6803972 -220720606 + MIR SINE MIR 101 222 -40 263 247 56 34 chr3 6804498 6804587 -220719991 - L2 LINE L2 -29 3243 3153 487 262 48 12 chr3 6804646 6804817 -220719761 - MIR SINE MIR -69 139 10 820 335 67 23 chr3 6805384 6805859 -220718719 + L1ME4a LINE L1 5319 5814 -307 342 184 87 0 chr3 6805995 6806098 -220718480 + L1ME4a LINE L1 6008 6119 -2 517 269 60 7 chr3 6806482 6806631 -220717947 - MIR3 SINE MIR -15 193 37 524 251 134 67 chr3 6807033 6807256 -220717322 - MIR SINE MIR -1 261 24 384 273 132 57 chr3 6808138 6808365 -220716213 + L1ME LINE L1 5547 5790 -331 1708 171 10 3 chr3 6808478 6808776 -220715802 - AluJo SINE Alu -12 300 1 240 304 14 0 chr3 6809861 6809930 -220714648 - L2 LINE L2 -8 3264 3195 298 308 183 23 chr3 6810086 6810349 -220714229 - L2 LINE L2 -349 2965 2661 510 307 42 16 chr3 6811859 6812048 -220712530 + MIR SINE MIR 47 240 -22 1314 215 150 3 chr3 6812310 6812424 -220712154 - L1MC4 LINE L1 0 8042 7946 279 0 0 0 chr3 6812424 6812455 -220712123 + (CA)n Simple_repeat Simple_repeat 2 32 0 1314 215 150 3 chr3 6812455 6812888 -220711690 - L1MC4 LINE L1 -96 7946 7304 1436 159 4 17 chr3 6812888 6813127 -220711451 - AluSq SINE Alu -77 236 1 3541 217 114 31 chr3 6813127 6814093 -220710485 - L1MC4 LINE L1 -657 7385 6340 294 261 157 9 chr3 6814242 6814357 -220710221 - MIR SINE MIR -60 148 17 502 250 147 6 chr3 6815787 6815943 -220708635 - MER5A DNA MER1_type -3 186 9 309 260 114 16 chr3 6816311 6816434 -220708144 - MIR SINE MIR -113 149 15 297 230 135 48 chr3 6817894 6818020 -220706558 + MER117 DNA MER1_type 1 137 -60 264 282 19 19 chr3 6818465 6818568 -220706010 + MIR SINE MIR 36 138 -70 2153 141 34 44 chr3 6819814 6820225 -220704353 + L1MA4A LINE L1 5715 6121 -182 512 209 0 0 chr3 6820215 6820328 -220704250 + L1MA4A LINE L1 6044 6279 0 * 504 297 60 6 chr3 6820718 6820900 -220703678 - MIR SINE MIR -49 213 22 323 324 19 9 chr3 6824016 6824121 -220700457 + MIR3 SINE MIR 89 194 -14 1592 193 38 41 chr3 6825956 6826349 -220698229 - L1MC2 LINE L1 -5 6339 5948 2357 90 0 28 chr3 6826393 6826714 -220697864 - AluSx SINE Alu 0 312 1 357 132 0 0 chr3 6827531 6827570 -220697008 + (TC)n Simple_repeat Simple_repeat 1 42 -26 210 37 0 0 chr3 6827570 6827597 -220696981 + (CA)n Simple_repeat Simple_repeat 1 27 0 357 132 0 0 chr3 6827597 6827625 -220696953 + (TC)n Simple_repeat Simple_repeat 41 68 0 1471 118 113 17 chr3 6828846 6829084 -220695494 + AluSx SINE Alu 33 293 -19 274 333 42 33 chr3 6829469 6829589 -220694989 + L2 LINE L2 3151 3271 -1 1676 174 14 3 chr3 6830337 6830631 -220693947 - AluJo SINE Alu -15 297 1 202 267 0 0 chr3 6830658 6830703 -220693875 + L2 LINE L2 3182 3226 -87 183 245 20 0 chr3 6830742 6830791 -220693787 + L2 LINE L2 3204 3253 -60 740 225 116 0 chr3 6831789 6831962 -220692616 + MER58A DNA MER1_type 30 222 -2 1590 116 39 27 chr3 6832624 6832882 -220691696 + L1MB3 LINE L1 5923 6183 0 216 0 0 0 chr3 6833174 6833198 -220691380 + (T)n Simple_repeat Simple_repeat 1 24 0 408 303 8 16 chr3 6833841 6833963 -220690615 - L2 LINE L2 -1 3271 3151 2364 91 3 0 chr3 6835485 6835782 -220688796 + AluSp SINE Alu 2 299 -14 208 300 14 43 chr3 6835803 6835873 -220688705 - MIR3 SINE MIR -33 175 108 261 0 0 0 chr3 6836468 6836497 -220688081 + (T)n Simple_repeat Simple_repeat 1 29 0 428 302 37 135 chr3 6837898 6838246 -220686332 - L2 LINE L2 -1 3271 2958 2031 123 38 0 chr3 6838802 6839095 -220685483 - AluSx SINE Alu -8 304 1 189 0 0 0 chr3 6839513 6839534 -220685044 + (T)n Simple_repeat Simple_repeat 1 21 0 1096 174 56 0 chr3 6839869 6840047 -220684531 + MER5A DNA MER1_type 1 188 -1 1692 163 23 23 chr3 6840562 6840863 -220683715 - AluJb SINE Alu -11 301 1 271 279 123 0 chr3 6841444 6841566 -220683012 - MIR SINE MIR -27 235 99 23 0 0 0 chr3 6843903 6843926 -220680652 + AT_rich Low_complexity Low_complexity 1 23 0 270 185 46 46 chr3 6846272 6846337 -220678241 - MIR SINE MIR -63 145 81 251 397 64 14 chr3 6847838 6848057 -220676521 + MIR SINE MIR 2 231 -31 2126 148 0 0 chr3 6848403 6848706 -220675872 + AluSx SINE Alu 1 303 -9 4172 141 28 82 chr3 6848942 6849128 -220675450 + LTR39 LTR ERV1 1 195 -588 1709 138 0 4 chr3 6849128 6849454 -220675124 + AluJb SINE Alu 38 362 0 4172 141 28 82 chr3 6849454 6850083 -220674495 + LTR39 LTR ERV1 195 773 -10 193 305 51 76 chr3 6850676 6850728 -220673850 - MIR SINE MIR -58 150 98 2334 105 3 6 chr3 6850728 6851041 -220673537 + AluSp SINE Alu 1 312 -1 193 305 51 76 chr3 6851041 6851106 -220673472 - MIR SINE MIR -110 98 36 2706 134 38 14 chr3 6852040 6852458 -220672120 + MSTA LTR MaLR 1 428 0 881 233 61 5 chr3 6852458 6852733 -220671845 + L1MC/D LINE L1 5517 5810 -372 1798 149 41 17 chr3 6852996 6853440 -220671138 - MLT1D LTR MaLR 0 505 1 249 33 0 0 chr3 6853703 6853733 -220670845 + (CA)n Simple_repeat Simple_repeat 2 31 0 576 149 62 195 chr3 6853958 6854208 -220670370 - L1M4 LINE L1 -774 5372 5191 881 154 23 0 chr3 6854208 6854338 -220670240 - FLAM_C SINE Alu 0 133 1 576 149 62 195 chr3 6854338 6854476 -220670102 - L1M4 LINE L1 -955 5191 5036 933 184 0 26 chr3 6854476 6854666 -220669912 + MER3 DNA MER1_type 1 185 -24 1121 205 19 19 chr3 6854683 6854951 -220669627 - L1M4 LINE L1 -1103 5043 4776 810 208 0 0 chr3 6854958 6855107 -220669471 + L1MB1 LINE L1 4843 4991 -1155 312 140 0 0 chr3 6855107 6855157 -220669421 + FLAM_A SINE Alu 83 132 -1 708 173 0 0 chr3 6855159 6855269 -220669309 + AluJo/FRAM SINE Alu 201 310 -2 4940 146 26 57 chr3 6855271 6855629 -220668949 + L1MB1 LINE L1 4980 5347 -821 1868 164 0 16 chr3 6855629 6855934 -220668644 + AluJb SINE Alu 4 303 -9 4940 146 26 57 chr3 6855934 6856758 -220667820 + L1MB1 LINE L1 5347 6145 -23 8298 227 82 23 chr3 6856784 6857299 -220667279 - L1M4 LINE L1 -1379 4767 4283 2240 73 0 0 chr3 6857299 6857572 -220667006 - AluY SINE Alu -38 273 1 8298 227 82 23 chr3 6857572 6858204 -220666374 - L1M4 LINE L1 -1863 4283 3689 1673 180 3 40 chr3 6858204 6858526 -220666052 - AluJo SINE Alu -2 310 1 8298 227 82 23 chr3 6858526 6859816 -220664762 - L1M4 LINE L1 -2457 3689 2187 651 294 64 80 chr3 6860074 6860527 -220664051 + L2 LINE L2 2224 2669 -645 310 323 71 95 chr3 6860564 6860973 -220663605 + L2 LINE L2 2812 3210 -62 1488 131 57 4 chr3 6861849 6862093 -220662485 - Tigger2 DNA MER2_type 0 2718 2462 4203 108 49 88 chr3 6862136 6862910 -220661668 - Tigger2 DNA MER2_type -1974 744 1 360 244 94 131 chr3 6864791 6865196 -220659382 + L1M2 LINE L1 740 1129 -5720 2140 114 10 0 chr3 6865637 6865934 -220658644 - AluSx SINE Alu -12 300 1 1821 154 3 28 chr3 6865959 6866278 -220658300 - AluJo SINE Alu -1 311 1 2067 135 3 0 chr3 6867119 6867416 -220657162 - AluSx SINE Alu -14 298 1 275 326 122 7 chr3 6868473 6868620 -220655958 - MIR3 SINE MIR -21 187 24 388 241 169 42 chr3 6868706 6868872 -220655706 + MLT1H1 LTR MaLR 49 235 -320 1379 80 6 6 chr3 6868876 6869052 -220655526 + AluSp SINE Alu 1 176 -137 207 0 0 0 chr3 6869056 6869079 -220655499 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2297 115 0 0 chr3 6869173 6869485 -220655093 - AluSx SINE Alu 0 312 1 289 196 0 0 chr3 6869495 6869546 -220655032 + MLT1H1 LTR MaLR 430 480 -75 274 295 0 0 chr3 6869823 6869884 -220654694 - MLT1G1 LTR MaLR 0 555 495 792 126 79 8 chr3 6869884 6870011 -220654567 - AluJo SINE Alu -175 137 2 835 234 128 95 chr3 6870011 6870527 -220654051 - MLT1G1 LTR MaLR -59 536 4 228 263 38 100 chr3 6872632 6872792 -220651786 + MIR SINE MIR 100 249 -13 * 441 268 180 3 chr3 6872774 6872947 -220651631 - MIR SINE MIR -49 213 19 2299 77 0 0 chr3 6873067 6873340 -220651238 + AluSc SINE Alu 25 297 -12 5625 29 0 0 chr3 6874118 6874731 -220649847 + L1PA3 LINE L1 5540 6152 -3 664 117 19 19 chr3 6875038 6875141 -220649437 - U13 snRNA snRNA -1 103 1 2223 122 0 0 chr3 6875571 6875866 -220648712 + AluSx SINE Alu 1 295 -17 216 0 0 0 chr3 6876064 6876088 -220648490 + (A)n Simple_repeat Simple_repeat 1 24 0 690 90 34 0 chr3 6876483 6876572 -220648006 - FLAM_C SINE Alu -26 117 26 331 313 96 72 chr3 6878324 6878825 -220645753 + L1MC4a LINE L1 4810 5322 -824 1072 228 153 50 chr3 6878856 6879313 -220645265 + L1MC4a LINE L1 5437 5940 -1868 1820 175 6 19 chr3 6879411 6879725 -220644853 + AluJb SINE Alu 1 310 -2 273 253 82 123 chr3 6880648 6880794 -220643784 + L2 LINE L2 3133 3272 0 297 140 40 0 chr3 6882319 6882369 -220642209 + FLAM SINE Alu 78 129 -4 207 383 103 3 chr3 6882671 6882961 -220641617 + L2 LINE L2 2331 2649 -665 1891 149 20 0 chr3 6882985 6883281 -220641297 - AluJb SINE Alu -10 302 1 225 350 137 38 chr3 6883500 6883814 -220640764 + L2 LINE L2 2928 3272 0 27 62 0 0 chr3 6884149 6884197 -220640381 + AT_rich Low_complexity Low_complexity 1 48 0 1589 187 32 18 chr3 6884377 6884655 -220639923 + AluJo SINE Alu 1 282 -30 398 270 22 58 chr3 6884672 6884809 -220639769 - MER5A DNA MER1_type -49 140 9 208 234 0 43 chr3 6884804 6884851 -220639727 - L3 LINE CR1 -17 1560 1516 * 283 274 53 32 chr3 6884853 6884948 -220639630 + MER5A DNA MER1_type 74 170 -19 194 311 66 57 chr3 6884854 6884976 -220639602 - MER5A DNA MER1_type -63 126 4 * 2518 211 29 49 chr3 6885058 6885607 -220638971 + MLT1F LTR MaLR 5 542 0 587 288 27 68 chr3 6886987 6887169 -220637409 + MIR SINE MIR 14 187 -75 2174 111 16 7 chr3 6887169 6887476 -220637102 + AluSx SINE Alu 1 310 -2 587 288 27 68 chr3 6887476 6887515 -220637063 + MIR SINE MIR 187 226 -36 813 170 0 15 chr3 6888346 6888481 -220636097 + FLAM_C SINE Alu 1 133 0 483 281 98 41 chr3 6888816 6889304 -220635274 + L1M4 LINE L1 4487 5002 -1144 1866 117 38 0 chr3 6889424 6889690 -220634888 + AluSq SINE Alu 1 276 -37 5862 89 11 39 chr3 6889735 6890613 -220633965 + L1PA14 LINE L1 5308 6161 0 573 189 53 95 chr3 6890794 6890819 -220633759 + MER58B DNA MER1_type 180 204 -2216 2069 142 0 13 chr3 6890819 6891128 -220633450 + AluSx SINE Alu 2 306 -6 573 189 53 95 chr3 6891128 6891271 -220633307 + MER58B DNA MER1_type 204 341 0 1393 242 79 12 chr3 6891312 6891789 -220632789 + MLT1E LTR MaLR 55 593 0 1926 120 11 14 chr3 6891905 6892268 -220632310 + AluSx SINE Alu 2 363 0 622 252 68 68 chr3 6892315 6892543 -220632035 + MLT1L LTR MaLR 327 557 -58 917 229 88 5 chr3 6892543 6892748 -220631830 + MER58A DNA MER1_type 2 223 -1 622 252 68 68 chr3 6892748 6892797 -220631781 + MLT1L LTR MaLR 556 604 -11 2009 171 16 30 chr3 6892867 6893235 -220631343 - MLT1A1 LTR MaLR -2 363 1 1801 205 123 30 chr3 6893262 6893759 -220630819 - L1ME3A LINE L1 -10 6160 5618 2275 102 0 3 chr3 6893871 6894166 -220630412 + AluSx SINE Alu 1 294 -18 1920 140 48 0 chr3 6894175 6894468 -220630110 + AluSx SINE Alu 1 307 -5 210 143 0 0 chr3 6894468 6894503 -220630075 + (GA)n Simple_repeat Simple_repeat 1 35 0 288 111 0 0 chr3 6895397 6895442 -220629136 + (GA)n Simple_repeat Simple_repeat 2 46 0 439 280 21 21 chr3 6896145 6896288 -220628290 - MIR SINE MIR -82 180 38 618 163 162 23 chr3 6897035 6897194 -220627384 - MER58C DNA MER1_type 0 215 31 1705 136 41 14 chr3 6897596 6897890 -220626688 - AluJb SINE Alu -10 302 1 2191 93 21 0 chr3 6898048 6898328 -220626250 + AluSc SINE Alu 8 293 -16 1196 164 0 29 chr3 6899073 6899281 -220625297 + AluJo SINE Alu 83 284 -28 441 0 0 0 chr3 6899285 6899334 -220625244 + (GA)n Simple_repeat Simple_repeat 2 50 0 29 60 0 0 chr3 6899358 6899408 -220625170 + AT_rich Low_complexity Low_complexity 1 50 0 313 149 27 54 chr3 6899763 6899837 -220624741 - MER116 DNA Mariner 0 80 9 630 214 0 0 chr3 6900142 6900245 -220624333 - FLAM_A SINE Alu -36 106 4 343 259 37 44 chr3 6900333 6900352 -220624226 - MIR SINE MIR 0 262 244 1294 160 173 30 chr3 6900352 6900652 -220623926 + MER2 DNA MER2_type 2 344 0 343 259 37 44 chr3 6900652 6900767 -220623811 - MIR SINE MIR -18 244 129 233 296 68 0 chr3 6901003 6901091 -220623487 + MIR SINE MIR 84 177 -85 1880 170 0 3 chr3 6902136 6902447 -220622131 + AluJb SINE Alu 1 310 -2 254 288 0 0 chr3 6903214 6903280 -220621298 + (TA)n Simple_repeat Simple_repeat 1 66 0 1721 169 10 23 chr3 6903293 6903601 -220620977 - AluJo SINE Alu -8 304 1 214 313 40 30 chr3 6904464 6904563 -220620015 - MIR SINE MIR -64 144 45 472 291 86 29 chr3 6905075 6905250 -220619328 + MIR3 SINE MIR 16 200 -8 282 287 21 11 chr3 6905505 6905599 -220618979 - MLT1K LTR MaLR -36 552 458 257 270 108 0 chr3 6905744 6905855 -220618723 - MLT1L LTR MaLR -310 305 183 227 241 37 0 chr3 6905894 6905948 -220618630 - MLT1L LTR MaLR -418 197 142 195 42 0 0 chr3 6906135 6906159 -220618419 + (GAATG)n Simple_repeat Simple_repeat 2 25 0 182 246 311 16 chr3 6906987 6907048 -220617530 - L2 LINE L2 -87 3185 3107 1985 38 0 0 chr3 6907165 6907404 -220617174 - L1P LINE L1 -1626 4520 4282 242 303 53 13 chr3 6907448 6907524 -220617054 - L2 LINE L2 -200 3072 2994 2020 135 7 0 chr3 6908882 6909186 -220615392 + AluSx SINE Alu 5 310 -2 2078 117 85 70 chr3 6909480 6909519 -220615059 - MSTA LTR MaLR 0 428 391 2268 103 3 3 chr3 6909519 6909820 -220614758 + AluSx SINE Alu 1 301 -11 2078 117 85 70 chr3 6909820 6909854 -220614724 - MSTA LTR MaLR -37 391 359 2104 131 0 3 chr3 6909854 6910144 -220614434 + AluSx SINE Alu 1 289 -23 2078 117 85 70 chr3 6910144 6910481 -220614097 - MSTA LTR MaLR -69 359 11 856 257 10 10 chr3 6911353 6911559 -220613019 - MLT1A1 LTR MaLR 0 365 160 2224 121 0 0 chr3 6911579 6911877 -220612701 - AluSx SINE Alu -14 298 1 448 52 0 17 chr3 6911877 6911935 -220612643 - MSTC LTR MaLR -371 57 1 2566 115 54 79 chr3 6912068 6912344 -220612234 - MLT1C LTR MaLR 0 467 207 1549 178 3 53 chr3 6912344 6912665 -220611913 - AluJo SINE Alu -7 305 1 2566 115 54 79 chr3 6912665 6912867 -220611711 - MLT1C LTR MaLR -260 207 1 31593 29 12 1 chr3 6913079 6919112 -220605466 + L1HS LINE L1 1 6155 0 24 0 0 0 chr3 6919112 6919136 -220605442 + AT_rich Low_complexity Low_complexity 1 24 0 441 246 84 26 chr3 6919188 6919342 -220605236 - MIR3 SINE MIR -1 207 37 594 274 50 50 chr3 6919655 6920228 -220604350 + L1MC5 LINE L1 7249 7739 -222 441 137 0 0 chr3 6920245 6920318 -220604260 + L1PB4 LINE L1 6070 6142 -14 805 172 0 0 chr3 6920330 6920458 -220604120 + FLAM_C SINE Alu 1 128 -5 311 257 125 14 chr3 6920478 6920622 -220603956 + L1MC4 LINE L1 7878 8037 -5 279 0 0 0 chr3 6920712 6920743 -220603835 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2381 101 0 3 chr3 6920753 6921061 -220603517 - AluSg SINE Alu -3 307 1 351 249 26 74 chr3 6921191 6921380 -220603198 + L1MC4a LINE L1 5750 5929 -1879 2366 189 37 2 chr3 6921448 6921967 -220602611 + L1MB7 LINE L1 4012 4548 -1598 868 123 23 8 chr3 6921973 6922103 -220602475 - FLAM_C SINE Alu -11 132 1 3907 183 56 46 chr3 6922106 6923737 -220600841 + L1MB7 LINE L1 4542 6179 -5 360 0 0 0 chr3 6924309 6924349 -220600229 + (TG)n Simple_repeat Simple_repeat 1 40 0 216 97 0 0 chr3 6924349 6924380 -220600198 + (GA)n Simple_repeat Simple_repeat 2 32 0 423 192 135 16 chr3 6925002 6925168 -220599410 - MLT1H LTR MaLR -8 547 346 2173 109 10 0 chr3 6925293 6925596 -220598982 - AluY SINE Alu -5 306 1 2208 218 25 25 chr3 6926287 6926592 -220597986 - L1MB8 LINE L1 -9 6169 5862 1995 127 39 0 chr3 6926592 6926876 -220597702 - AluJb SINE Alu -17 295 1 2208 218 25 25 chr3 6926876 6927177 -220597401 - L1MB8 LINE L1 -315 5863 5563 1319 241 129 33 chr3 6928028 6928579 -220595999 + L1MC4 LINE L1 7160 7763 -279 733 194 0 15 chr3 6928586 6928720 -220595858 + FLAM_C SINE Alu 2 133 0 234 91 0 0 chr3 6928864 6928897 -220595681 + (A)n Simple_repeat Simple_repeat 1 33 0 348 202 106 0 chr3 6928898 6928992 -220595586 + L1MD3 LINE L1 7883 7986 -9 1482 144 53 46 chr3 6929008 6929292 -220595286 + AluJb SINE Alu 1 286 -26 270 115 0 0 chr3 6929292 6929344 -220595234 + (CATA)n Simple_repeat Simple_repeat 4 55 0 567 261 26 53 chr3 6929354 6929580 -220594998 + L1ME3 LINE L1 5936 6155 -7 2337 97 0 0 chr3 6929999 6930298 -220594280 + AluSc SINE Alu 1 299 -10 180 111 0 0 chr3 6930408 6930435 -220594143 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 565 174 147 0 chr3 6930563 6930672 -220593906 + FLAM_A SINE Alu 1 125 -8 611 258 32 81 chr3 6930732 6930980 -220593598 + MLT1J LTR MaLR 236 471 -40 2109 159 46 7 chr3 6931072 6931511 -220593067 + L1MB3 LINE L1 5725 6180 -3 40 0 0 0 chr3 6931512 6931552 -220593026 + AT_rich Low_complexity Low_complexity 1 40 0 2143 134 0 0 chr3 6931558 6931864 -220592714 + AluSx SINE Alu 1 306 -6 1126 261 90 23 chr3 6931872 6932437 -220592141 + L2 LINE L2 2712 3311 -2 294 293 116 56 chr3 6933343 6933575 -220591003 - L2 LINE L2 -882 2432 2187 805 309 91 40 chr3 6933624 6934268 -220590310 + L2 LINE L2 2606 3280 -33 27 62 0 0 chr3 6934281 6934329 -220590249 + AT_rich Low_complexity Low_complexity 1 48 0 568 328 76 4 chr3 6934419 6934681 -220589897 - L2 LINE L2 -1163 2151 1871 417 221 265 52 chr3 6934824 6934960 -220589618 - MLT1H LTR MaLR -17 532 361 799 251 5 10 chr3 6934964 6935159 -220589419 - MER58A DNA MER1_type 0 224 31 393 245 108 57 chr3 6935219 6935466 -220589112 - MLT1H LTR MaLR -217 332 31 2381 82 0 22 chr3 6935641 6935956 -220588622 + AluSq SINE Alu 1 308 -5 2257 130 0 9 chr3 6936564 6936879 -220587699 + AluSq SINE Alu 1 312 -1 943 172 18 0 chr3 6936892 6937055 -220587523 + FAM SINE Alu 1 166 -9 856 164 0 8 chr3 6937301 6937435 -220587143 + FLAM_A SINE Alu 1 133 0 1824 158 3 3 chr3 6937633 6937924 -220586654 + AluJb SINE Alu 1 291 -21 1273 321 60 23 chr3 6937938 6939560 -220585018 + L1M4 LINE L1 2938 4618 -1528 507 202 0 0 chr3 6939577 6939701 -220584877 + (CATATA)n Simple_repeat Simple_repeat 2 125 0 24 53 0 0 chr3 6939709 6939747 -220584831 + AT_rich Low_complexity Low_complexity 1 38 0 276 159 57 0 chr3 6939750 6939838 -220584740 + (TATATG)n Simple_repeat Simple_repeat 4 96 0 241 265 15 0 chr3 6939850 6939982 -220584596 + (TA)n Simple_repeat Simple_repeat 1 134 0 329 343 79 6 chr3 6940008 6940186 -220584392 + L1M4 LINE L1 4672 4862 -1284 1183 192 76 10 chr3 6940186 6940477 -220584101 - L1MC/D LINE L1 -2150 5658 5349 937 218 56 53 chr3 6940482 6940840 -220583738 - L1ME2 LINE L1 0 6164 5806 3238 230 100 72 chr3 6940886 6941967 -220582611 + L1MC4 LINE L1 6502 7551 -491 2002 127 7 13 chr3 6941967 6942267 -220582311 + AluJb SINE Alu 1 298 -14 3238 230 100 72 chr3 6942267 6942467 -220582111 + L1MC4 LINE L1 7551 7744 -298 2287 65 41 0 chr3 6942467 6942757 -220581821 - AluY SINE Alu -9 302 1 3238 230 100 72 chr3 6942757 6942973 -220581605 + L1MC4 LINE L1 7744 8042 0 1238 149 159 62 chr3 6942980 6943256 -220581322 - AluJo SINE Alu -9 303 1 513 249 60 55 chr3 6943495 6943696 -220580882 + MLT1K LTR MaLR 44 245 -343 423 0 0 0 chr3 6943736 6943783 -220580795 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 314 261 153 51 chr3 6944165 6944322 -220580256 - MER5A DNA MER1_type 0 189 17 1712 159 10 20 chr3 6944670 6944965 -220579613 - AluJo SINE Alu -20 292 1 489 51 20 41 chr3 6945009 6945107 -220579471 + (TG)n Simple_repeat Simple_repeat 2 97 0 427 299 25 25 chr3 6945255 6945412 -220579166 - MIR SINE MIR -1 261 105 264 246 65 58 chr3 6945518 6945656 -220578922 - L2 LINE L2 -4 3309 3171 1583 186 17 7 chr3 6945661 6945962 -220578616 + AluJo SINE Alu 1 304 -8 216 292 258 0 chr3 6946070 6946159 -220578419 + L2 LINE L2 3201 3312 -1 378 200 51 131 chr3 6946400 6946575 -220578003 + MER103 DNA DNA 3 163 -3 493 257 138 0 chr3 6946619 6946771 -220577807 - MER96 DNA MER1_type 0 175 3 2078 150 0 10 chr3 6947115 6947429 -220577149 - AluSx SINE Alu -1 311 1 196 254 153 0 chr3 6947478 6947537 -220577041 + L2 LINE L2 3246 3313 0 2108 101 4 0 chr3 6947892 6948169 -220576409 - AluSx SINE Alu -2 310 33 1507 46 10 15 chr3 6948214 6948411 -220576167 - MER107 DNA MER1_type 0 197 2 2344 84 0 0 chr3 6948489 6948785 -220575793 - AluSx SINE Alu -16 296 1 699 337 112 9 chr3 6950296 6950724 -220573854 + L2 LINE L2 2808 3287 -26 1478 199 56 11 chr3 6950724 6951081 -220573497 + MLT1A2 LTR MaLR 1 373 -1 699 337 112 9 chr3 6951081 6951109 -220573469 + L2 LINE L2 3287 3311 -2 253 116 23 0 chr3 6951504 6951547 -220573031 - MER4E LTR ERV1 -96 670 627 2193 89 0 3 chr3 6951564 6951868 -220572710 - L1PB1 LINE L1 -1 6150 5848 474 276 31 10 chr3 6952196 6952363 -220572215 - MIR SINE MIR -2 260 91 2317 113 0 0 chr3 6952375 6952677 -220571901 + AluSx SINE Alu 1 302 -10 226 207 17 52 chr3 6952953 6953011 -220571567 + L2 LINE L2 3217 3272 0 414 231 208 31 chr3 6953937 6954067 -220570511 + MER5A DNA MER1_type 36 188 -1 330 26 0 0 chr3 6954214 6954253 -220570325 + (TG)n Simple_repeat Simple_repeat 1 39 0 431 306 80 17 chr3 6954479 6954780 -220569798 + L1ME2 LINE L1 81 400 -6023 1577 244 58 87 chr3 6955141 6956120 -220568458 + L1ME2 LINE L1 1156 2162 -4779 2399 86 0 3 chr3 6956120 6956424 -220568154 + AluSg SINE Alu 1 303 -7 1577 244 58 87 chr3 6956424 6956601 -220567977 + L1ME2 LINE L1 2162 2343 -4598 2239 118 7 0 chr3 6956601 6956906 -220567672 + AluSx SINE Alu 1 307 -5 2435 99 0 0 chr3 6956906 6957219 -220567359 + AluSp SINE Alu 1 313 0 1577 244 58 87 chr3 6957219 6957513 -220567065 + L1ME2 LINE L1 2342 2643 -4298 847 257 5 0 chr3 6957513 6957700 -220566878 + MER5A DNA MER1_type 2 189 0 1577 244 58 87 chr3 6957700 6957785 -220566793 + L1ME2 LINE L1 2643 2729 -4212 1936 163 0 3 chr3 6957785 6958098 -220566480 + AluSx SINE Alu 1 312 0 823 159 0 0 chr3 6958108 6958234 -220566344 + FLAM_C SINE Alu 1 126 -7 1577 244 58 87 chr3 6958234 6958468 -220566110 + L1ME2 LINE L1 2738 2977 -3964 1681 157 82 0 chr3 6958468 6958748 -220565830 + AluJo SINE Alu 1 303 -9 1577 244 58 87 chr3 6958748 6958967 -220565611 + L1ME2 LINE L1 2977 3201 -3740 2342 112 3 0 chr3 6958967 6959279 -220565299 + AluSp SINE Alu 1 313 0 1577 244 58 87 chr3 6959279 6959326 -220565252 + L1ME2 LINE L1 3201 3248 -3693 1657 194 3 46 chr3 6959326 6959651 -220564927 + AluJo SINE Alu 1 311 -1 1577 244 58 87 chr3 6959651 6959925 -220564653 + L1ME2 LINE L1 3248 3569 -3372 333 191 4 2 chr3 6959927 6960184 -220564394 + AluJo SINE Alu 1 300 -2 547 188 8 29 chr3 6960224 6960390 -220564188 + L1MD2 LINE L1 5423 5573 -610 186 43 0 0 chr3 6960824 6960847 -220563731 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 1693 198 21 5 chr3 6960847 6961221 -220563357 + L1MD2 LINE L1 5556 5935 -307 720 157 22 22 chr3 6961240 6961374 -220563204 - AluJo SINE Alu -178 134 1 1710 189 28 46 chr3 6961374 6961781 -220562797 + L1MD2 LINE L1 5922 6322 -37 1777 171 7 11 chr3 6961781 6962067 -220562511 - AluJb SINE Alu -27 285 1 1710 189 28 46 chr3 6962067 6962092 -220562486 + L1MD2 LINE L1 6322 6346 -13 510 240 21 10 chr3 6962095 6962287 -220562291 + L1ME2 LINE L1 3633 3826 -3115 26924 62 4 6 chr3 6962307 6968464 -220556114 + L1PA4 LINE L1 11 6155 0 1293 279 95 2 chr3 6968470 6969048 -220555530 + L1ME2 LINE L1 3824 4455 -2486 3358 235 73 29 chr3 6969054 6969557 -220555021 + L1ME2 LINE L1 4940 5419 -1540 1760 114 38 0 chr3 6969557 6969821 -220554757 - AluSx SINE Alu -21 291 18 3358 235 73 29 chr3 6969821 6971250 -220553328 + L1ME2 LINE L1 5419 6959 0 186 291 236 31 chr3 6971310 6971437 -220553141 + L3 LINE CR1 554 706 -871 1141 121 0 0 chr3 6971496 6971662 -220552916 - AluSg/x SINE Alu -9 303 138 534 111 12 12 chr3 6971762 6971843 -220552735 - AluY SINE Alu -233 85 5 517 260 52 19 chr3 6971853 6972007 -220552571 - MER112 DNA MER1_type -12 248 90 2008 135 0 16 chr3 6972025 6972337 -220552241 - AluSq SINE Alu -6 307 1 282 222 16 0 chr3 6972505 6972568 -220552010 - MER112 DNA MER1_type -187 73 10 402 252 53 8 chr3 6972835 6972966 -220551612 - MER91C DNA MER1_type 0 140 4 409 267 79 43 chr3 6972969 6973138 -220551440 + MIR SINE MIR 8 191 -17 207 302 79 0 chr3 6973104 6973167 -220551411 + L2 LINE L2 3242 3309 -4 * 231 277 12 48 chr3 6973155 6973238 -220551340 + MIR SINE MIR 134 213 -49 200 292 219 10 chr3 6974623 6974719 -220549859 + L2 LINE L2 3155 3270 -2 274 181 74 44 chr3 6975712 6975815 -220548763 - MIR SINE MIR -61 147 63 187 315 81 54 chr3 6975968 6976079 -220548499 + L2 LINE L2 3150 3263 -9 553 220 91 102 chr3 6976083 6976218 -220548360 - MIR SINE MIR 0 262 130 1629 129 70 22 chr3 6976218 6976489 -220548089 - AluJo SINE Alu -28 284 1 553 220 91 102 chr3 6976489 6976617 -220547961 - MIR SINE MIR -132 130 2 779 178 0 30 chr3 6977690 6977825 -220546753 - FLAM_C SINE Alu -2 131 1 769 231 98 31 chr3 6977855 6978080 -220546498 - MIR SINE MIR -20 242 3 517 225 0 45 chr3 6978130 6978241 -220546337 - L2 LINE L2 0 3313 3208 260 238 0 165 chr3 6978146 6978310 -220546268 - MIR SINE MIR -10 252 116 * 474 300 0 0 chr3 6978375 6978485 -220546093 - L2 LINE L2 -10 3262 3153 823 164 7 26 chr3 6978749 6978901 -220545677 + AluJb SINE Alu 140 288 -24 306 291 74 3 chr3 6978920 6979035 -220545543 + MIR3 SINE MIR 75 194 -54 384 152 15 0 chr3 6979261 6979327 -220545251 + L1MEc LINE L1 37 103 -6293 * 414 265 8 17 chr3 6979326 6979443 -220545135 + L1MEc LINE L1 706 821 -5575 644 203 0 31 chr3 6979457 6979585 -220544993 + L2 LINE L2 3190 3313 0 644 221 177 6 chr3 6980258 6980439 -220544139 + MIR SINE MIR 14 225 -37 391 290 60 0 chr3 6980507 6980607 -220543971 + MIR SINE MIR 39 144 -64 368 270 34 0 chr3 6980610 6980699 -220543879 + L2 LINE L2 3195 3286 -27 886 172 5 106 chr3 6980710 6980787 -220543791 - MER45A DNA AcHobo -1403 178 95 2356 85 3 0 chr3 6980787 6981093 -220543485 + AluSg SINE Alu 1 307 -3 886 172 5 106 chr3 6981093 6981107 -220543471 - MER45A DNA AcHobo -1486 95 81 2162 106 7 3 chr3 6981107 6981410 -220543168 + AluSp SINE Alu 1 304 -9 886 172 5 106 chr3 6981410 6981515 -220543063 - MER45A DNA AcHobo -1500 81 1 300 289 26 26 chr3 6981515 6981629 -220542949 + MIR SINE MIR 149 262 0 204 225 99 84 chr3 6981627 6981698 -220542880 - MIR SINE MIR -66 196 125 * 916 98 0 0 chr3 6981714 6981837 -220542741 + FLAM_C SINE Alu 1 123 -20 361 281 114 23 chr3 6982299 6982556 -220542022 + L2 LINE L2 2774 3052 -261 879 134 0 0 chr3 6982557 6982684 -220541894 + FLAM_C SINE Alu 1 127 -16 226 358 0 0 chr3 6982887 6982954 -220541624 + L2 LINE L2 3204 3270 -2 220 311 68 0 chr3 6982963 6983037 -220541541 + MIR SINE MIR 75 153 -55 2110 107 0 0 chr3 6983049 6983338 -220541240 - AluSx SINE Alu -6 306 18 240 209 0 0 chr3 6983391 6983434 -220541144 - L2 LINE L2 -19 3294 3252 2017 144 0 0 chr3 6983659 6983971 -220540607 + AluJb SINE Alu 1 312 0 782 154 0 29 chr3 6984535 6984671 -220539907 - FLAM_C SINE Alu 0 133 2 1833 153 3 19 chr3 6984749 6985056 -220539522 + AluJb SINE Alu 1 302 -10 22 0 0 0 chr3 6985061 6985083 -220539495 + AT_rich Low_complexity Low_complexity 1 22 0 1993 115 28 0 chr3 6985193 6985481 -220539097 + AluSx SINE Alu 1 296 -16 1962 144 100 19 chr3 6985750 6986111 -220538467 - MLT1B LTR MaLR 0 390 1 264 261 59 34 chr3 6986203 6986322 -220538256 + L2 LINE L2 3173 3294 -19 1971 98 41 10 chr3 6986413 6986708 -220537870 - AluSg SINE Alu -6 304 1 384 234 36 7 chr3 6986787 6986924 -220537654 + L1MC4 LINE L1 7902 8042 0 1213 149 160 62 chr3 6986932 6987207 -220537371 - AluJo SINE Alu 0 302 1 605 249 60 55 chr3 6987446 6987647 -220536931 + MLT1K LTR MaLR 44 245 -343 423 0 0 0 chr3 6987687 6987734 -220536844 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 328 261 153 51 chr3 6988116 6988273 -220536305 - MER5A DNA MER1_type 0 189 17 1606 159 10 20 chr3 6988621 6988916 -220535662 - AluJo SINE Alu -20 292 1 489 51 20 41 chr3 6988960 6989058 -220535520 + (TG)n Simple_repeat Simple_repeat 2 97 0 441 294 31 25 chr3 6989206 6989366 -220535212 - MIR SINE MIR -1 261 101 263 246 65 58 chr3 6989469 6989607 -220534971 - L2 LINE L2 -4 3309 3171 1475 186 17 7 chr3 6989612 6989913 -220534665 + AluJo SINE Alu 1 304 -8 224 292 258 0 chr3 6990021 6990110 -220534468 + L2 LINE L2 3201 3312 -1 422 200 51 131 chr3 6990351 6990526 -220534052 + MER103 DNA DNA 3 163 -3 512 257 138 0 chr3 6990570 6990722 -220533856 - MER96 DNA MER1_type 0 175 3 1960 150 0 10 chr3 6991066 6991380 -220533198 - AluSx SINE Alu -1 311 1 196 254 153 0 chr3 6991429 6991488 -220533090 + L2 LINE L2 3246 3313 0 2006 101 4 0 chr3 6991843 6992120 -220532458 - AluSx SINE Alu -2 310 33 1537 46 10 15 chr3 6992165 6992362 -220532216 - MER107 DNA MER1_type 0 197 2 2250 84 0 0 chr3 6992440 6992736 -220531842 - AluSx SINE Alu -16 296 1 743 324 107 9 chr3 6994235 6994675 -220529903 + L2 LINE L2 2797 3287 -26 1540 202 56 11 chr3 6994675 6995032 -220529546 + MLT1A2 LTR MaLR 1 373 -1 743 324 107 9 chr3 6995032 6995060 -220529518 + L2 LINE L2 3287 3311 -2 279 116 23 0 chr3 6995455 6995498 -220529080 - MER4E LTR ERV1 -96 670 627 2240 89 0 3 chr3 6995515 6995819 -220528759 - L1PB1 LINE L1 -1 6150 5848 483 281 31 10 chr3 6996147 6996314 -220528264 - MIR SINE MIR -2 260 91 2198 113 0 0 chr3 6996326 6996628 -220527950 + AluSx SINE Alu 1 302 -10 224 207 17 52 chr3 6996904 6996962 -220527616 + L2 LINE L2 3217 3272 0 414 231 208 31 chr3 6997888 6998018 -220526560 + MER5A DNA MER1_type 36 188 -1 330 26 0 0 chr3 6998165 6998204 -220526374 + (TG)n Simple_repeat Simple_repeat 1 39 0 505 307 83 17 chr3 6998430 6998730 -220525848 + L1MCc LINE L1 81 400 -6023 1564 248 63 99 chr3 6999051 7000070 -220524508 + L1MCc LINE L1 1114 2167 -4774 2292 86 0 3 chr3 7000070 7000374 -220524204 + AluSg SINE Alu 1 303 -7 1564 248 63 99 chr3 7000374 7000551 -220524027 + L1MCc LINE L1 2167 2349 -4592 2114 118 7 0 chr3 7000551 7000856 -220523722 + AluSx SINE Alu 1 307 -5 2319 99 0 0 chr3 7000856 7001169 -220523409 + AluSp SINE Alu 1 313 0 1564 248 63 99 chr3 7001169 7001463 -220523115 + L1MCc LINE L1 2348 2651 -4290 839 257 5 0 chr3 7001463 7001650 -220522928 + MER5A DNA MER1_type 2 189 0 1564 248 63 99 chr3 7001650 7001735 -220522843 + L1MCc LINE L1 2651 2737 -4204 1816 163 0 3 chr3 7001735 7002048 -220522530 + AluSx SINE Alu 1 312 0 827 159 0 0 chr3 7002058 7002184 -220522394 + FLAM_C SINE Alu 1 126 -7 1564 248 63 99 chr3 7002184 7002418 -220522160 + L1MCc LINE L1 2746 2987 -3954 1572 157 82 0 chr3 7002418 7002698 -220521880 + AluJo SINE Alu 1 303 -9 1564 248 63 99 chr3 7002698 7002917 -220521661 + L1MCc LINE L1 2987 3257 -3684 2221 107 3 0 chr3 7002917 7003225 -220521353 + AluSp SINE Alu 1 309 -4 1564 248 63 99 chr3 7003225 7003265 -220521313 + L1MCc LINE L1 3257 3297 -3644 577 205 9 18 chr3 7003278 7003390 -220521188 + FLAM_C SINE Alu 3 113 -30 185 0 40 0 chr3 7005222 7005247 -220519331 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 297 0 0 0 chr3 7005246 7005279 -220519299 + (CA)n Simple_repeat Simple_repeat 2 34 0 273 234 9 72 chr3 7006575 7006686 -220517892 + L1ME LINE L1 5725 5828 -293 318 167 0 0 chr3 7007891 7007951 -220516627 + (TG)n Simple_repeat Simple_repeat 2 61 0 33 0 0 0 chr3 7008972 7009005 -220515573 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr3 7009827 7009853 -220514725 + AT_rich Low_complexity Low_complexity 1 26 0 390 229 0 0 chr3 7011419 7011502 -220513076 - MIR SINE MIR -101 161 79 791 261 81 5 chr3 7011664 7011886 -220512692 - MIR SINE MIR -22 240 2 208 304 128 16 chr3 7011929 7012054 -220512524 - MIR SINE MIR 0 262 124 363 284 0 0 chr3 7012066 7012147 -220512431 - MIR SINE MIR -63 145 65 316 301 62 9 chr3 7012200 7012313 -220512265 - MIR SINE MIR -54 208 90 2034 109 10 0 chr3 7012503 7012796 -220511782 + AluJb SINE Alu 1 296 -16 183 80 0 0 chr3 7012911 7012936 -220511642 + (GGGA)n Simple_repeat Simple_repeat 2 26 0 22 35 0 0 chr3 7014062 7014091 -220510487 + AT_rich Low_complexity Low_complexity 1 29 0 4073 175 32 28 chr3 7014119 7014965 -220509613 + L1MB5 LINE L1 5314 6166 -8 987 148 37 70 chr3 7014977 7015221 -220509357 - L1MC5 LINE L1 -68 7893 7658 2229 87 7 0 chr3 7015313 7015612 -220508966 + AluSg SINE Alu 1 301 -9 1607 171 32 4 chr3 7015730 7016010 -220508568 + AluJo SINE Alu 1 288 -24 1054 291 74 3 chr3 7016075 7016412 -220508166 - L1MC4a LINE L1 -1865 5943 5583 291 242 55 11 chr3 7016459 7016550 -220508028 + L1MC4a LINE L1 5560 5654 -467 33 0 0 0 chr3 7016555 7016588 -220507990 + AT_rich Low_complexity Low_complexity 1 33 0 750 171 0 0 chr3 7016588 7016705 -220507873 - FLAM_C SINE Alu -25 118 2 215 267 0 0 chr3 7016782 7016827 -220507751 + polypurine Low_complexity Low_complexity 4 48 0 306 303 127 42 chr3 7016846 7017011 -220507567 + L1MC4a LINE L1 5755 5933 -1875 458 211 65 16 chr3 7017033 7017156 -220507422 + MIR SINE MIR 110 238 -24 235 223 72 72 chr3 7017204 7017370 -220507208 + L1ME4a LINE L1 5943 6108 -13 228 356 104 0 chr3 7017675 7017790 -220506788 + L2 LINE L2 3146 3272 0 417 245 61 49 chr3 7017803 7017966 -220506612 + MIR SINE MIR 80 244 -18 974 167 88 21 chr3 7017993 7018185 -220506393 + AluJo SINE Alu 87 291 -21 34 24 0 0 chr3 7018186 7018227 -220506351 + AT_rich Low_complexity Low_complexity 1 41 0 291 114 0 0 chr3 7018337 7018381 -220506197 + (CA)n Simple_repeat Simple_repeat 1 44 0 195 237 0 0 chr3 7018433 7018471 -220506107 - L2 LINE L2 -34 3279 3242 462 236 24 8 chr3 7018483 7018606 -220505972 - MIR SINE MIR -115 147 23 339 290 46 100 chr3 7020065 7020324 -220504254 - L2 LINE L2 0 3272 3028 1985 183 41 31 chr3 7020355 7020771 -220503807 + MLT1C LTR MaLR 44 463 -4 228 263 71 30 chr3 7020774 7020873 -220503705 - L2 LINE L2 -345 2969 2867 2486 49 0 16 chr3 7021469 7021776 -220502802 - AluY SINE Alu -9 302 1 229 136 0 169 chr3 7021828 7021887 -220502691 + MLT1K LTR MaLR 201 249 -339 1476 186 13 68 chr3 7022698 7023005 -220501573 + AluJb SINE Alu 1 290 -22 476 264 21 7 chr3 7023338 7023478 -220501100 - MIR SINE MIR -48 214 73 1090 101 0 0 chr3 7023536 7023684 -220500894 - Tigger7 DNA MER2_type -1 2486 2339 344 171 100 0 chr3 7023703 7023773 -220500805 - Tigger7 DNA MER2_type -473 77 1 368 259 168 0 chr3 7023970 7024113 -220500465 + MIR3 SINE MIR 38 204 -4 1998 104 45 3 chr3 7024431 7024720 -220499858 + AluSx SINE Alu 1 301 -11 2196 107 0 7 chr3 7024731 7025020 -220499558 + AluSc SINE Alu 1 287 -22 281 241 143 53 chr3 7025029 7025162 -220499416 + L3 LINE CR1 1206 1350 -227 356 264 38 9 chr3 7025167 7025273 -220499305 + LTR16A1 LTR ERVL 11 119 -338 234 0 0 0 chr3 7025473 7025499 -220499079 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 2116 127 23 10 chr3 7027430 7027738 -220496840 + AluSx SINE Alu 1 312 0 33 25 0 0 chr3 7027738 7027778 -220496800 + AT_rich Low_complexity Low_complexity 1 40 0 3793 55 13 0 chr3 7028697 7029173 -220495405 - L1PA6 LINE L1 -199 5955 5474 * 6587 54 22 2 chr3 7029172 7030041 -220494537 + L1P LINE L1 3694 4579 -1567 216 214 41 31 chr3 7030181 7030279 -220494299 + (CAAA)n Simple_repeat Simple_repeat 3 101 0 404 263 17 31 chr3 7030286 7030515 -220494063 + GA-rich Low_complexity Low_complexity 1 225 0 297 244 29 52 chr3 7030648 7030820 -220493758 + CT-rich Low_complexity Low_complexity 5 172 0 274 125 31 42 chr3 7030820 7030916 -220493662 + T-rich Low_complexity Low_complexity 2 96 0 532 215 15 8 chr3 7030993 7031123 -220493455 - AluSq/x SINE Alu -180 133 3 644 233 43 0 chr3 7031125 7031288 -220493290 - MIR SINE MIR -32 230 61 1913 162 0 9 chr3 7031293 7031608 -220492970 + AluSx SINE Alu 1 312 0 22 0 0 0 chr3 7031733 7031755 -220492823 + AT_rich Low_complexity Low_complexity 1 22 0 1552 199 28 0 chr3 7031786 7032068 -220492510 + MER63B DNA MER1_type 1 290 -146 902 81 16 0 chr3 7032079 7032202 -220492376 - FLAM_C SINE Alu -18 125 1 2313 116 0 0 chr3 7032205 7032533 -220492045 - AluSx SINE Alu 0 328 1 2074 147 0 3 chr3 7032535 7032847 -220491731 - AluSq SINE Alu -2 311 1 10220 39 27 94 chr3 7032887 7034370 -220490208 - SVA Other Other -3 1383 1 414 246 0 51 chr3 7034508 7034626 -220489952 + FLAM_A SINE Alu 27 138 -4 2274 109 0 0 chr3 7034629 7034922 -220489656 + AluSg SINE Alu 3 295 -15 1189 185 0 4 chr3 7034937 7035164 -220489414 + AluJo SINE Alu 87 312 0 1928 209 30 26 chr3 7035185 7035615 -220488963 - MLT1C LTR MaLR 0 467 36 585 144 40 0 chr3 7035619 7035744 -220488834 + CT-rich Low_complexity Low_complexity 1 130 0 2449 102 12 86 chr3 7035926 7036036 -220488542 - MER4A LTR ERV1 -172 492 375 2053 128 3 13 chr3 7036036 7036342 -220488236 - AluSx SINE Alu -9 303 1 2449 102 12 86 chr3 7036342 7036803 -220487775 - MER4A LTR ERV1 -289 375 1 2078 121 28 0 chr3 7037934 7038223 -220486355 - AluSx SINE Alu -13 299 3 271 268 97 48 chr3 7038351 7038620 -220485958 - L1ME4a LINE L1 -73 6048 5767 24 32 0 0 chr3 7038861 7038892 -220485686 + AT_rich Low_complexity Low_complexity 1 31 0 1135 138 29 0 chr3 7038892 7039066 -220485512 - AluJb SINE Alu -13 299 121 1492 181 42 21 chr3 7039156 7039443 -220485135 - AluJo SINE Alu -19 293 1 262 180 67 90 chr3 7041612 7041701 -220482877 - L1MC5 LINE L1 -44 7917 7831 1694 189 7 3 chr3 7041723 7042025 -220482553 - AluJb SINE Alu -9 303 1 21 57 0 0 chr3 7042220 7042255 -220482323 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 7042331 7042354 -220482224 + AT_rich Low_complexity Low_complexity 1 23 0 1796 158 0 55 chr3 7042355 7042685 -220481893 - AluJb SINE Alu 0 312 1 225 296 25 12 chr3 7042707 7042788 -220481790 - L1ME4a LINE L1 -463 5658 5577 1647 214 81 29 chr3 7043392 7043924 -220480654 - MLT1F1 LTR MaLR 0 567 2 2366 97 0 0 chr3 7044200 7044499 -220480079 - AluSg SINE Alu -11 299 1 2128 123 0 3 chr3 7045492 7045801 -220478777 - AluSx SINE Alu -4 308 1 1650 235 92 74 chr3 7048297 7049090 -220475488 + L1MC4 LINE L1 7235 8041 -1 1218 162 43 43 chr3 7049287 7049522 -220475056 - MER8 DNA MER2_type -1 238 4 2242 98 0 7 chr3 7049624 7049919 -220474659 - AluSx SINE Alu -18 294 2 1283 182 42 42 chr3 7050158 7050220 -220474358 + L1PA16 LINE L1 5875 5936 -230 2180 124 3 0 chr3 7050220 7050519 -220474059 + AluSx SINE Alu 1 300 -12 1283 182 42 42 chr3 7050519 7050742 -220473836 + L1PA16 LINE L1 5935 6160 -6 196 282 0 0 chr3 7051785 7051824 -220472754 + MIR SINE MIR 37 75 -133 1200 186 53 56 chr3 7052306 7052591 -220471987 + AluJo SINE Alu 6 289 -23 2503 90 3 0 chr3 7053873 7054184 -220470394 - AluSp SINE Alu 0 313 2 1200 147 11 11 chr3 7054184 7054367 -220470211 - AluJb SINE Alu -5 307 122 293 128 0 21 chr3 7054368 7054415 -220470163 + AluSp SINE Alu 117 162 -141 817 96 0 0 chr3 7054419 7054523 -220470055 - AluJb SINE Alu -202 110 7 622 315 17 9 chr3 7054873 7055105 -220469473 + MIR SINE MIR 12 245 -17 278 363 18 33 chr3 7055163 7055223 -220469355 + L1MDa LINE L1 49 108 -6432 1970 132 3 32 chr3 7055223 7055533 -220469045 + AluSx SINE Alu 1 301 -11 278 363 18 33 chr3 7055533 7055745 -220468833 + L1MDa LINE L1 108 317 -6223 239 327 18 30 chr3 7056296 7056464 -220468114 + L1MDa LINE L1 854 1019 -5511 1072 113 0 92 chr3 7056600 7056785 -220467793 + AluSx SINE Alu 1 168 -144 2119 118 3 37 chr3 7056790 7057113 -220467465 + AluSx SINE Alu 1 312 0 4816 156 35 41 chr3 7057116 7057303 -220467275 + L1M4c LINE L1 721 908 -5476 1968 154 0 0 chr3 7057303 7057596 -220466982 + AluSx SINE Alu 1 293 -19 4816 156 35 41 chr3 7057596 7058471 -220466107 + L1M4c LINE L1 908 1776 -4608 1680 127 0 80 chr3 7058471 7058770 -220465808 + AluSx SINE Alu 1 275 -37 870 143 63 11 chr3 7058772 7058947 -220465631 + L1MB3 LINE L1 5949 6132 -51 1390 134 5 9 chr3 7058952 7059168 -220465410 + AluSg/x SINE Alu 82 296 -16 2091 203 95 97 chr3 7059197 7059929 -220464649 + L1MDa LINE L1 1469 2201 -4339 2099 146 25 22 chr3 7059929 7060291 -220464287 - THE1B LTR MaLR -1 363 1 2091 203 95 97 chr3 7060291 7060725 -220463853 + L1MDa LINE L1 2201 2634 -3906 1583 187 4 4 chr3 7060725 7060993 -220463585 + AluJo SINE Alu 6 273 -39 2091 203 95 97 chr3 7060993 7061498 -220463080 + L1MDa LINE L1 2634 3139 -3401 1170 206 65 43 chr3 7061498 7061775 -220462803 + AluJb SINE Alu 3 285 -17 2091 203 95 97 chr3 7061775 7062057 -220462521 + L1MDa LINE L1 3139 3420 -3120 1060 158 0 0 chr3 7062058 7062210 -220462368 - FRAM SINE Alu -25 151 1 1356 217 114 46 chr3 7062210 7062697 -220461881 + L1MDa LINE L1 3407 3859 -2681 2171 113 0 0 chr3 7062697 7063005 -220461573 - AluSx SINE Alu 0 308 1 2230 106 0 0 chr3 7063011 7063325 -220461253 - AluSx SINE Alu 0 314 1 1356 217 114 46 chr3 7063325 7063440 -220461138 + L1MDa LINE L1 3863 4060 -2480 564 311 11 11 chr3 7064693 7064876 -220459702 + HERVI LTR ERV1 788 970 -6815 2481 303 51 36 chr3 7065102 7066064 -220458514 + HERVI LTR ERV1 954 1900 -5885 3215 55 43 5 chr3 7066064 7066485 -220458093 + L1PA5 LINE L1 5717 6153 -1 2481 303 51 36 chr3 7066485 7068223 -220456355 + HERVI LTR ERV1 1900 4112 -3673 2729 325 35 31 chr3 7068305 7069931 -220454647 + HERVI LTR ERV1 4124 5756 -2029 2141 301 41 45 chr3 7070823 7072051 -220452527 + HERVI LTR ERV1 6425 7647 -138 2287 136 5 35 chr3 7072958 7073333 -220451245 - THE1B LTR MaLR 0 364 1 682 83 0 0 chr3 7073429 7073525 -220451053 + AluY SINE Alu 208 303 -8 26 0 0 0 chr3 7074414 7074440 -220450138 + AT_rich Low_complexity Low_complexity 1 26 0 251 202 160 75 chr3 7075008 7075102 -220449476 - MIR SINE MIR -62 146 45 792 160 23 0 chr3 7075621 7075752 -220448826 + AluJo SINE Alu 2 135 -177 2286 115 3 10 chr3 7075770 7076084 -220448494 + AluSx SINE Alu 1 312 0 249 321 274 0 chr3 7076263 7076453 -220448125 - MIR SINE MIR -20 242 1 570 144 11 0 chr3 7077298 7077388 -220447190 + AluSc SINE Alu 194 284 -25 210 37 0 0 chr3 7077393 7077420 -220447158 + (TAA)n Simple_repeat Simple_repeat 3 29 0 2089 112 0 3 chr3 7077420 7077751 -220446827 + AluSx SINE Alu 1 330 0 2279 101 0 0 chr3 7077751 7078038 -220446540 + AluSg SINE Alu 1 287 -23 812 170 69 6 chr3 7078063 7078222 -220446356 + AluSg/x SINE Alu 134 302 -7 2006 139 0 3 chr3 7078359 7078653 -220445925 + AluSx SINE Alu 1 293 -19 1422 164 21 52 chr3 7079573 7079860 -220444718 - AluJb SINE Alu -30 282 5 233 324 184 7 chr3 7080105 7080241 -220444337 + L2 LINE L2 2599 2758 -556 289 366 0 18 chr3 7080387 7080499 -220444079 + L2 LINE L2 3126 3235 -37 189 0 0 0 chr3 7080797 7080818 -220443760 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 246 256 61 12 chr3 7080819 7080901 -220443677 - L2 LINE L2 -18 3295 3210 2035 83 65 7 chr3 7080969 7081246 -220443332 + AluSx SINE Alu 1 293 -19 1604 181 13 32 chr3 7081323 7081632 -220442946 + AluJo SINE Alu 6 308 -4 2467 81 0 0 chr3 7081817 7082113 -220442465 + AluSx SINE Alu 1 296 -16 1865 106 124 4 chr3 7082303 7082578 -220442000 + AluSg SINE Alu 1 308 -2 1712 135 67 28 chr3 7082691 7082973 -220441605 + AluSx SINE Alu 1 293 -19 765 154 0 8 chr3 7083183 7083313 -220441265 + AluJ SINE Alu 1 129 -173 2165 125 0 3 chr3 7083344 7083639 -220440939 + AluSx SINE Alu 1 294 -18 710 175 0 8 chr3 7083652 7083772 -220440806 - FLAM_C SINE Alu -23 120 2 926 184 0 36 chr3 7083790 7083958 -220440620 + AluJ SINE Alu 129 290 -22 1242 130 0 0 chr3 7084166 7084343 -220440235 + AluSq SINE Alu 133 309 -4 303 170 136 78 chr3 7084360 7084602 -220439976 + L1ME4a LINE L1 5538 5835 -286 272 293 113 7 chr3 7084684 7084834 -220439744 + L1ME4a LINE L1 5956 6121 0 24 0 0 0 chr3 7084840 7084864 -220439714 + AT_rich Low_complexity Low_complexity 1 24 0 2021 94 91 0 chr3 7085325 7085601 -220438977 - AluSg SINE Alu -9 301 1 2344 97 3 0 chr3 7085607 7085917 -220438661 - AluSx SINE Alu -1 311 1 21 0 0 0 chr3 7086176 7086197 -220438381 + AT_rich Low_complexity Low_complexity 1 21 0 1805 157 7 20 chr3 7087124 7087424 -220437154 + AluSx SINE Alu 1 296 -16 329 296 53 59 chr3 7088123 7088292 -220436286 + MER5A DNA MER1_type 22 189 0 1802 150 10 20 chr3 7088602 7088735 -220435843 + AluJo SINE Alu 1 134 -178 2209 94 0 70 chr3 7088735 7089066 -220435512 + AluSg SINE Alu 1 308 -2 1802 150 10 20 chr3 7089066 7089225 -220435353 + AluJo SINE Alu 134 290 -22 22 0 0 0 chr3 7090027 7090049 -220434529 + AT_rich Low_complexity Low_complexity 1 22 0 389 193 23 23 chr3 7090161 7090249 -220434329 + L2 LINE L2 3221 3308 -5 1869 137 53 0 chr3 7090328 7090612 -220433966 + AluJb SINE Alu 1 299 -13 1321 104 0 0 chr3 7090702 7090875 -220433703 + AluSp SINE Alu 132 304 -9 2055 121 0 7 chr3 7091829 7092110 -220432468 + AluSg SINE Alu 1 279 -31 1133 148 9 70 chr3 7092402 7092631 -220431947 + AluJo SINE Alu 1 215 -97 283 151 19 0 chr3 7092633 7092686 -220431892 + AluJo SINE Alu 83 136 -166 1615 111 4 25 chr3 7092708 7092952 -220431626 + AluSq SINE Alu 68 306 -7 203 303 121 0 chr3 7093681 7093780 -220430798 - L2 LINE L2 -1 3271 3161 1308 158 63 60 chr3 7094196 7094481 -220430097 + AluJo SINE Alu 23 308 -4 678 159 0 90 chr3 7094960 7094994 -220429584 - MER94 DNA DNA -1 133 98 2216 110 3 13 chr3 7094994 7095293 -220429285 - AluSx SINE Alu -16 296 1 678 159 0 90 chr3 7095293 7095403 -220429175 - MER94 DNA DNA -36 98 2 2196 157 60 35 chr3 7095442 7095894 -220428684 + MLT1C LTR MaLR 5 467 0 2341 107 22 19 chr3 7096017 7096383 -220428195 - L1PA16 LINE L1 0 6166 5800 2192 118 10 0 chr3 7096384 7096680 -220427898 - AluSq SINE Alu -14 299 1 2255 129 0 0 chr3 7097253 7097564 -220427014 + AluSx SINE Alu 1 311 -1 2108 135 0 3 chr3 7097753 7098057 -220426521 + AluSq SINE Alu 1 303 -10 2177 119 14 0 chr3 7098061 7098355 -220426223 + AluSx SINE Alu 1 298 -14 1910 127 3 67 chr3 7098940 7099255 -220425323 + AluSp SINE Alu 1 295 -18 2108 130 13 0 chr3 7099310 7099609 -220424969 + AluSg SINE Alu 1 303 -7 2513 135 46 14 chr3 7100102 7100502 -220424076 - MER65A LTR ERV1 0 445 29 2024 126 0 0 chr3 7100502 7100773 -220423805 - AluSx SINE Alu -41 271 1 2513 135 46 14 chr3 7100773 7100803 -220423775 - MER65A LTR ERV1 -416 29 1 766 170 7 22 chr3 7100838 7100973 -220423605 - FLAM_C SINE Alu 0 133 1 213 227 0 30 chr3 7101051 7101117 -220423461 + GA-rich Low_complexity Low_complexity 4 67 0 342 263 32 0 chr3 7101127 7101222 -220423356 + MER97c DNA MER1_type? 27 124 -966 222 118 0 0 chr3 7101249 7101283 -220423295 + (TTCTCC)n Simple_repeat Simple_repeat 4 37 0 222 279 9 63 chr3 7101492 7101603 -220422975 + GA-rich Low_complexity Low_complexity 4 108 0 433 69 0 0 chr3 7101735 7101793 -220422785 - L1P LINE L1 -2392 3754 3697 5738 41 0 3 chr3 7101795 7102477 -220422101 + L1PA5 LINE L1 5474 6153 -1 306 219 41 0 chr3 7102784 7102857 -220421721 + MER63 DNA MER1_type 7 708 -128 346 143 0 0 chr3 7102876 7102932 -220421646 + MER63 DNA MER1_type 970 1025 -36 299 258 31 69 chr3 7103016 7103175 -220421403 - MIR SINE MIR -1 261 109 4120 84 14 9 chr3 7103217 7103788 -220420790 - L1PA10 LINE L1 -3 6165 5592 1397 235 102 40 chr3 7104242 7104314 -220420264 - LTR16A1 LTR ERVL 0 457 391 1998 163 10 61 chr3 7104314 7104725 -220419853 - MLT1B LTR MaLR 0 390 1 1397 235 102 40 chr3 7104725 7105082 -220419496 - LTR16A1 LTR ERVL -66 391 1 338 289 44 0 chr3 7105321 7105411 -220419167 + L2 LINE L2 3162 3255 -17 511 272 0 0 chr3 7105444 7105558 -220419020 - MER81 DNA DNA 0 114 1 1882 172 0 10 chr3 7105660 7105974 -220418604 + AluSx SINE Alu 1 311 -1 250 293 211 48 chr3 7106500 7106647 -220417931 - MLT1K LTR MaLR -68 520 350 477 0 0 0 chr3 7106920 7106973 -220417605 + (TG)n Simple_repeat Simple_repeat 2 54 0 271 211 67 96 chr3 7107218 7107405 -220417173 + LOR1a LTR ERV1 310 603 0 1281 264 124 30 chr3 7108196 7108722 -220415856 - MLT1L LTR MaLR 0 615 41 1203 206 258 76 chr3 7108922 7109423 -220415155 + MLT1G1 LTR MaLR 3 594 -1 412 291 15 65 chr3 7109732 7109931 -220414647 + MLT1I LTR MaLR 80 268 -141 678 167 25 0 chr3 7109973 7110093 -220414485 - FAM SINE Alu -9 40 1 1226 213 30 4 chr3 7110097 7110459 -220414119 + MER74A LTR ERVL 14 468 -90 381 298 35 0 chr3 7110547 7110661 -220413917 + MLT1I LTR MaLR 288 405 -4 295 345 67 8 chr3 7110693 7110812 -220413766 + MLT1K LTR MaLR 62 187 -401 1297 258 73 35 chr3 7110815 7111164 -220413414 + L2 LINE L2 2526 2860 -453 1558 188 27 48 chr3 7111164 7111537 -220413041 - MLT1A1 LTR MaLR 0 365 1 1297 258 73 35 chr3 7111537 7111936 -220412642 + L2 LINE L2 2860 3311 -2 245 323 0 0 chr3 7111952 7112014 -220412564 + MLT1K LTR MaLR 180 241 -347 257 265 47 82 chr3 7112307 7112477 -220412101 + MLT1J2 LTR MaLR 287 450 0 626 246 82 75 chr3 7112481 7112762 -220411816 + MLT1K LTR MaLR 304 586 -2 270 279 130 0 chr3 7113308 7113469 -220411109 + MIR SINE MIR 81 262 0 255 310 58 35 chr3 7113575 7113662 -220410916 - L2 LINE L2 -43 3270 3182 233 357 9 0 chr3 7114960 7115072 -220409506 + MIR SINE MIR 140 252 -10 624 266 89 10 chr3 7115087 7115290 -220409288 - MIR SINE MIR -5 257 39 842 318 130 16 chr3 7115588 7116079 -220408499 + L3 LINE CR1 843 1389 -188 188 354 36 16 chr3 7116157 7116349 -220408229 + L2 LINE L2 2779 2974 -340 2355 93 3 0 chr3 7116415 7116706 -220407872 + AluSx SINE Alu 1 292 -20 180 125 0 0 chr3 7116835 7116867 -220407711 + (CA)n Simple_repeat Simple_repeat 2 33 0 295 233 155 19 chr3 7116867 7116970 -220407608 + L2 LINE L2 3196 3312 -1 861 256 106 57 chr3 7118031 7118420 -220406158 + LTR33A LTR ERVL 2 421 -102 1954 146 3 0 chr3 7118420 7118714 -220405864 - AluSx SINE Alu -17 295 1 861 256 106 57 chr3 7118714 7118816 -220405762 + LTR33A LTR ERVL 421 517 -6 678 264 73 67 chr3 7119095 7119191 -220405387 + L2 LINE L2 2621 2715 -599 1496 190 48 7 chr3 7119191 7119481 -220405097 + AluJo SINE Alu 1 302 -10 678 264 73 67 chr3 7119481 7119728 -220404850 + L2 LINE L2 2715 2966 -348 239 197 211 14 chr3 7119926 7119997 -220404581 + L2 LINE L2 3227 3311 -2 210 313 0 0 chr3 7120001 7120068 -220404510 - MIR SINE MIR -115 147 81 2108 115 7 23 chr3 7121127 7121432 -220403146 + AluSx SINE Alu 3 302 -10 467 273 60 105 chr3 7121560 7121912 -220402666 - MLT1I LTR MaLR 0 409 74 773 292 33 17 chr3 7122000 7122240 -220402338 + MIR SINE MIR 18 261 -1 201 304 14 87 chr3 7122330 7122399 -220402179 + L2 LINE L2 3200 3263 -9 1606 190 16 29 chr3 7122523 7122839 -220401739 - AluJb SINE Alu 0 312 1 288 263 79 94 chr3 7123086 7123136 -220401442 - MIR SINE MIR 0 262 213 953 92 0 241 chr3 7123136 7123201 -220401377 - MER5A DNA MER1_type 0 189 110 2171 120 0 3 chr3 7123201 7123500 -220401078 + AluSx SINE Alu 1 298 -14 348 24 0 0 chr3 7123505 7123546 -220401032 + (CA)n Simple_repeat Simple_repeat 2 42 0 953 92 0 241 chr3 7123546 7123723 -220400855 - MER5A DNA MER1_type -83 106 1 288 263 79 94 chr3 7123723 7123938 -220400640 - MIR SINE MIR -49 213 1 309 289 86 16 chr3 7124735 7124863 -220399715 + L3 LINE CR1 1134 1270 -307 389 313 0 0 chr3 7125366 7125465 -220399113 - MIR SINE MIR -76 132 34 289 0 148 0 chr3 7125474 7125535 -220399043 + T-rich Low_complexity Low_complexity 6 75 0 419 257 13 72 chr3 7125631 7125783 -220398795 - MIR SINE MIR -43 219 77 2092 158 29 8 chr3 7126560 7126940 -220397638 - MLT1B LTR MaLR 0 390 3 377 245 133 10 chr3 7126948 7127046 -220397532 - L2 LINE L2 -16 3297 3188 393 308 60 8 chr3 7127436 7127569 -220397009 + MIR3 SINE MIR 21 160 -48 234 261 45 81 chr3 7128400 7128511 -220396067 - L2 LINE L2 -8 3305 3199 2093 141 3 0 chr3 7128522 7128819 -220395759 + AluJb SINE Alu 1 298 -14 3127 186 25 21 chr3 7129183 7129743 -220394835 + MER68 LTR ERV1 1 562 0 840 133 7 53 chr3 7129922 7130073 -220394505 - MLT1B LTR MaLR -8 382 239 1984 154 52 12 chr3 7130120 7130450 -220394128 + MER61A LTR ERV1 1 343 0 281 80 0 60 chr3 7132477 7132527 -220392051 + Alu SINE Alu 1 47 -255 973 141 19 0 chr3 7132527 7132683 -220391895 + AluSg/x SINE Alu 141 299 -11 361 298 92 26 chr3 7132718 7132946 -220391632 + MIR SINE MIR 14 256 -6 458 273 0 0 chr3 7133079 7133189 -220391389 - MER94 DNA DNA 0 134 25 266 321 171 0 chr3 7133574 7133714 -220390864 - MER117 DNA MER1_type -15 182 19 1046 251 58 69 chr3 7134013 7134589 -220389989 + L2 LINE L2 2760 3306 -7 21 36 0 0 chr3 7135817 7135845 -220388733 + AT_rich Low_complexity Low_complexity 1 28 0 1794 101 8 0 chr3 7135860 7136108 -220388470 - AluSq SINE Alu -63 250 1 191 362 133 0 chr3 7136233 7136338 -220388240 - L2 LINE L2 -1 3312 3194 282 315 11 0 chr3 7136696 7136788 -220387790 - MIR3 SINE MIR -25 183 91 1579 189 28 18 chr3 7137751 7138037 -220386541 - AluJo SINE Alu -23 289 1 692 279 47 63 chr3 7138133 7138434 -220386144 - L2 LINE L2 -13 3300 3005 510 298 12 6 chr3 7138614 7138782 -220385796 - MIR SINE MIR -22 240 72 187 284 74 53 chr3 7138887 7138982 -220385596 + MIR SINE MIR 70 144 -64 402 336 17 0 chr3 7139655 7139834 -220384744 - MIR SINE MIR -44 218 36 332 180 0 0 chr3 7140699 7140760 -220383818 - MLT2B1 LTR ERVL -4 516 456 * 1570 206 81 22 chr3 7140759 7141131 -220383447 - MLT2D LTR ERVL -20 534 1 5495 167 23 13 chr3 7141582 7143045 -220381533 + L1P5 LINE L1 4129 5608 -543 2430 77 0 3 chr3 7143045 7143344 -220381234 + AluY SINE Alu 1 298 -13 5495 167 23 13 chr3 7143344 7143508 -220381070 + L1P5 LINE L1 5608 5769 -382 991 337 33 19 chr3 7143916 7143969 -220380609 + L1M3c LINE L1 959 1010 -6088 198 0 0 0 chr3 7143969 7143991 -220380587 + (CA)n Simple_repeat Simple_repeat 1 22 0 991 337 33 19 chr3 7143991 7144364 -220380214 + L1M3c LINE L1 1010 1391 -5707 225 283 92 33 chr3 7144524 7144644 -220379934 + L1M3c LINE L1 1681 1807 -5361 3270 247 110 22 chr3 7145173 7145629 -220378949 + L1M3c LINE L1 1902 2316 -4851 7800 51 6 10 chr3 7145629 7147170 -220377408 + SVA Other Other 7 1385 -1 3270 247 110 22 chr3 7147170 7148975 -220375603 + L1M3c LINE L1 2316 3990 -3177 1809 162 3 17 chr3 7148975 7149265 -220375313 + AluJb SINE Alu 5 290 -22 3270 247 110 22 chr3 7149265 7149425 -220375153 + L1M3c LINE L1 3990 4134 -3033 1164 197 92 4 chr3 7149425 7149664 -220374914 + AluJo SINE Alu 1 260 -52 449 117 57 0 chr3 7149720 7149803 -220374775 - L1M2 LINE L1 -4352 1683 1346 6194 177 29 7 chr3 7149841 7151065 -220373513 + L1M3c LINE L1 4125 5375 -1792 1793 285 18 7 chr3 7151097 7151616 -220372962 - L1M2 LINE L1 -5251 704 1 227 317 45 22 chr3 7151718 7151942 -220372636 - L1M4 LINE L1 -3065 3081 2853 371 262 0 48 chr3 7152306 7152409 -220372169 + MIR SINE MIR 44 141 -67 282 253 121 96 chr3 7152647 7152845 -220371733 + MIR SINE MIR 19 221 -41 1137 130 6 0 chr3 7153576 7153745 -220370833 + AluSg/x SINE Alu 131 300 -10 1083 256 108 42 chr3 7154261 7154694 -220369884 + MLT1C LTR MaLR 5 466 -1 384 132 40 53 chr3 7154763 7154839 -220369739 - LTR65 LTR ERV1 -256 413 339 381 312 85 0 chr3 7155564 7155705 -220368873 + Charlie8 DNA MER1_type 113 265 -2152 2188 186 9 30 chr3 7155841 7156270 -220368308 - MLT1E2 LTR MaLR 0 626 207 3497 98 11 7 chr3 7156339 7156789 -220367789 - MLT2A2 LTR ERVL 0 453 2 1251 238 19 7 chr3 7156796 7157103 -220367475 + L1ME2 LINE L1 5840 6150 -14 195 42 0 0 chr3 7157130 7157154 -220367424 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1607 192 6 41 chr3 7157207 7157524 -220367054 + AluJo SINE Alu 1 306 -6 22 0 0 0 chr3 7158153 7158175 -220366403 + AT_rich Low_complexity Low_complexity 1 22 0 293 324 22 7 chr3 7158238 7158374 -220366204 + MIR3 SINE MIR 57 194 -14 1292 212 33 29 chr3 7158459 7158765 -220365813 - MER58B DNA MER1_type 0 341 35 340 290 145 32 chr3 7159011 7159259 -220365319 + MLT1J LTR MaLR 1 276 -273 1533 286 82 8 chr3 7159372 7159848 -220364730 + MLT1E LTR MaLR 3 513 -80 470 216 22 65 chr3 7159896 7160035 -220364543 + MLT1J LTR MaLR 379 511 0 1797 147 3 20 chr3 7160390 7160683 -220363895 + AluSx SINE Alu 13 300 -12 281 275 57 9 chr3 7162018 7162132 -220362446 + MIR SINE MIR 36 154 -59 721 205 98 48 chr3 7162133 7162453 -220362125 - LTR37B LTR ERV1 0 468 125 796 220 43 0 chr3 7162543 7162757 -220361821 + MER58C DNA MER1_type 12 215 0 321 284 22 37 chr3 7163768 7163902 -220360676 + Charlie8 DNA MER1_type 61 192 -2225 291 215 11 108 chr3 7163918 7163984 -220360594 + MER5A DNA MER1_type 9 65 -124 2132 124 3 10 chr3 7163984 7164290 -220360288 + AluSx SINE Alu 1 304 -8 291 215 11 108 chr3 7164290 7164316 -220360262 + MER5A DNA MER1_type 65 92 -97 185 302 0 0 chr3 7164694 7164737 -220359841 + L2 LINE L2 3218 3260 -12 266 234 13 78 chr3 7164810 7164887 -220359691 + L2 LINE L2 3175 3246 -26 181 325 149 9 chr3 7164970 7165084 -220359494 - L2 LINE L2 -14 3299 3170 261 161 77 51 chr3 7165155 7165247 -220359331 - MLT1H LTR MaLR -18 572 281 346 192 51 0 chr3 7165311 7165389 -220359189 - MLT1H LTR MaLR -229 320 239 2239 111 16 3 chr3 7165422 7165729 -220358849 + AluSx SINE Alu 1 311 -1 531 288 18 12 chr3 7166066 7166229 -220358349 - MLT1H LTR MaLR -374 175 12 491 274 39 17 chr3 7166401 7166580 -220357998 - MIR SINE MIR -3 259 77 246 250 0 0 chr3 7167479 7167539 -220357039 + A-rich Low_complexity Low_complexity 1 60 0 448 290 33 49 chr3 7167560 7167743 -220356835 + MER117 DNA MER1_type 2 181 -16 1564 164 53 37 chr3 7167884 7168183 -220356395 + AluJo SINE Alu 1 304 -8 1554 196 39 0 chr3 7168204 7168490 -220356088 + AluJo SINE Alu 11 307 -5 233 169 0 84 chr3 7169121 7169192 -220355386 + T-rich Low_complexity Low_complexity 3 67 0 267 114 0 0 chr3 7169194 7169238 -220355340 + (TTCC)n Simple_repeat Simple_repeat 4 47 0 1737 153 33 0 chr3 7169238 7169559 -220355019 - AluJb SINE Alu 0 331 1 884 208 133 123 chr3 7169916 7170487 -220354091 - LTR8A LTR ERV1 -150 577 1 1926 115 11 0 chr3 7170603 7170962 -220353616 + AluSg SINE Alu 1 362 0 2118 121 3 0 chr3 7171026 7171324 -220353254 + AluSx SINE Alu 1 299 -13 1589 159 41 14 chr3 7172011 7172301 -220352277 + AluJo SINE Alu 1 298 -14 2260 64 0 3 chr3 7172404 7172713 -220351865 + AluY SINE Alu 1 308 0 1692 174 0 17 chr3 7172717 7173015 -220351563 + AluJb SINE Alu 1 293 -19 1019 114 27 0 chr3 7173230 7173379 -220351199 - AluSg/x SINE Alu -16 294 142 1107 263 58 0 chr3 7173379 7173687 -220350891 - MLT1B LTR MaLR -63 327 2 1014 275 136 21 chr3 7174153 7174528 -220350050 - L2 LINE L2 0 3313 2896 511 267 0 8 chr3 7174543 7174674 -220349904 - AluJb SINE Alu -1 311 182 230 229 0 0 chr3 7174674 7174722 -220349856 + MLT1E1 LTR MaLR 4 51 -603 * 2127 226 66 57 chr3 7174689 7175299 -220349279 + MLT1E2 LTR MaLR 10 624 -2 536 273 50 0 chr3 7175331 7175492 -220349086 - L2 LINE L2 -420 2894 2726 290 318 95 0 chr3 7176830 7176956 -220347622 + MIR SINE MIR 117 254 -8 1832 168 10 0 chr3 7177167 7177477 -220347101 + 7SLRNA srpRNA srpRNA 1 313 -7 418 240 275 43 chr3 7177601 7177859 -220346719 - L2 LINE L2 -4 3309 2992 371 321 37 0 chr3 7178214 7178348 -220346230 - MIR SINE MIR 0 262 124 368 267 91 82 chr3 7178428 7178519 -220346059 + L3 LINE CR1 1115 1204 -373 1964 134 0 0 chr3 7178519 7178809 -220345769 + AluSx SINE Alu 1 290 -22 368 267 91 82 chr3 7178809 7178949 -220345629 + L3 LINE CR1 1204 1348 -229 366 274 35 9 chr3 7178949 7179062 -220345516 + LTR16A1 LTR ERVL 4 119 -338 234 0 0 0 chr3 7179262 7179288 -220345290 + (CAGG)n Simple_repeat Simple_repeat 1 26 0 2408 43 7 0 chr3 7180380 7180685 -220343893 - AluY SINE Alu -4 307 1 269 157 0 0 chr3 7180754 7180805 -220343773 - L1MB8 LINE L1 -4 6174 6124 1344 171 144 4 chr3 7180819 7181082 -220343496 - AluSg SINE Alu 0 300 1 22 0 0 0 chr3 7181082 7181104 -220343474 + AT_rich Low_complexity Low_complexity 1 22 0 2252 147 34 0 chr3 7181104 7181457 -220343121 - L1PA16 LINE L1 -9 6157 5793 315 132 38 0 chr3 7181457 7181510 -220343068 - L1MB8 LINE L1 -41 6137 6083 213 39 0 0 chr3 7182034 7182060 -220342518 + (CA)n Simple_repeat Simple_repeat 2 27 0 304 216 88 49 chr3 7182177 7182279 -220342299 + MER5A DNA MER1_type 81 186 -3 238 115 39 0 chr3 7182669 7182721 -220341857 + (CA)n Simple_repeat Simple_repeat 1 54 0 285 191 44 3 chr3 7182812 7182954 -220341624 + MER53 DNA DNA 3 186 -3 1696 128 139 0 chr3 7183162 7183436 -220341142 - AluSx SINE Alu 0 312 1 24 0 0 0 chr3 7183442 7183466 -220341112 + AT_rich Low_complexity Low_complexity 1 24 0 200 267 0 0 chr3 7183708 7183753 -220340825 + MER91 DNA MER1_type 1 45 -151 1513 243 132 50 chr3 7184069 7184608 -220339970 + MLT1G LTR MaLR 8 590 0 7209 58 3 3 chr3 7185095 7186583 -220337995 - L1PA7 LINE L1 0 6154 4668 4597 79 10 22 chr3 7186848 7188016 -220336562 + SVA Other Other 1 1386 0 22 70 0 0 chr3 7188403 7188446 -220336132 + AT_rich Low_complexity Low_complexity 1 43 0 657 219 8 0 chr3 7188515 7188634 -220335944 + FLAM_A SINE Alu 1 120 -13 297 282 39 19 chr3 7189173 7189276 -220335302 + MIR3 SINE MIR 54 158 -50 595 247 14 0 chr3 7189380 7189526 -220335052 - MER103 DNA DNA 0 166 19 2231 107 0 0 chr3 7189862 7190161 -220334417 + AluSx SINE Alu 1 299 -13 355 222 25 0 chr3 7190464 7190545 -220334033 + MER117 DNA MER1_type 75 157 -40 992 60 26 27 chr3 7190694 7191207 -220333371 + (TG)n Simple_repeat Simple_repeat 1 512 0 661 228 39 22 chr3 7191835 7192015 -220332563 + MER3 DNA MER1_type 1 183 -26 283 301 67 46 chr3 7192226 7192465 -220332113 + L2 LINE L2 2734 2977 -337 2401 59 0 3 chr3 7192534 7192838 -220331740 + AluY SINE Alu 1 303 -8 2083 100 4 0 chr3 7192847 7193127 -220331451 + AluSx SINE Alu 2 282 -30 459 0 0 0 chr3 7193130 7193181 -220331397 + (CATA)n Simple_repeat Simple_repeat 2 52 0 948 236 75 77 chr3 7193299 7193752 -220330826 - MER110A LTR ERV1 -14 454 3 278 301 68 62 chr3 7193781 7193809 -220330769 + L2 LINE L2 3166 3192 -121 354 23 0 0 chr3 7193809 7193852 -220330726 + (TC)n Simple_repeat Simple_repeat 2 44 0 278 301 68 62 chr3 7193852 7193969 -220330609 + L2 LINE L2 3192 3312 -1 333 295 19 9 chr3 7194740 7194845 -220329733 - MLT1K LTR MaLR -6 582 477 794 254 11 0 chr3 7195218 7195395 -220329183 + MER5A DNA MER1_type 3 181 -8 1960 154 0 0 chr3 7195655 7195954 -220328624 - AluSx SINE Alu -13 299 1 1172 98 0 0 chr3 7195980 7196143 -220328435 - AluYa5 SINE Alu -16 295 133 2563 40 0 0 chr3 7196143 7196445 -220328133 - AluYb8 SINE Alu -16 302 1 299 269 172 27 chr3 7196453 7196639 -220327939 + L1ME4a LINE L1 5682 5894 -227 1011 243 109 76 chr3 7196672 7196839 -220327739 - MLT1F1 LTR MaLR -1 566 406 1506 136 81 0 chr3 7196839 7197075 -220327503 + AluSx SINE Alu 44 298 -14 1011 243 109 76 chr3 7197075 7197352 -220327226 - MLT1F1 LTR MaLR -161 406 104 266 333 11 0 chr3 7197473 7197563 -220327015 - MLT1F1 LTR MaLR -498 95 5 669 227 0 0 chr3 7198133 7198252 -220326326 + FLAM_A SINE Alu 5 123 -10 798 267 89 71 chr3 7199394 7199459 -220325119 - MLT1K LTR MaLR -63 525 463 3531 126 4 28 chr3 7199459 7199999 -220324579 - MER1A DNA MER1_type 0 527 1 798 267 89 71 chr3 7199999 7200326 -220324252 - MLT1K LTR MaLR -125 463 126 287 204 21 0 chr3 7200545 7200638 -220323940 + (TTCA)n Simple_repeat Simple_repeat 3 97 0 292 225 113 0 chr3 7200670 7200741 -220323837 + L2 LINE L2 3194 3272 0 2670 120 31 2 chr3 7200758 7201174 -220323404 - MSTA LTR MaLR 0 428 1 520 171 202 0 chr3 7201414 7201543 -220323035 - MER5A DNA MER1_type -29 160 6 479 233 133 13 chr3 7202063 7202213 -220322365 - MIR SINE MIR -74 188 21 880 175 23 0 chr3 7202667 7202838 -220321740 - FRAM SINE Alu -1 175 1 2009 123 0 3 chr3 7203832 7204141 -220320437 - AluSx SINE Alu -4 308 1 213 189 0 0 chr3 7205068 7205105 -220319473 + (TG)n Simple_repeat Simple_repeat 2 38 0 446 271 7 52 chr3 7205407 7205562 -220319016 + MER103 DNA DNA 19 166 0 292 219 110 24 chr3 7205621 7205703 -220318875 - L2 LINE L2 0 3272 3184 201 171 0 0 chr3 7205725 7205760 -220318818 + A-rich Low_complexity Low_complexity 1 35 0 787 110 17 0 chr3 7205761 7205879 -220318699 + AluSc SINE Alu 164 283 -26 228 222 79 32 chr3 7206217 7206280 -220318298 + MIR3 SINE MIR 129 194 -14 207 0 0 0 chr3 7206339 7206362 -220318216 + (TG)n Simple_repeat Simple_repeat 2 24 0 1931 121 0 0 chr3 7206368 7206649 -220317929 - AluSx SINE Alu -31 281 1 2339 84 0 0 chr3 7208926 7209223 -220315355 + AluSq SINE Alu 1 297 -16 21 0 0 0 chr3 7209885 7209906 -220314672 + AT_rich Low_complexity Low_complexity 1 21 0 1808 147 0 34 chr3 7211291 7211611 -220312967 + AluJo SINE Alu 1 309 -3 1669 86 9 0 chr3 7211700 7211933 -220312645 + L1MA2 LINE L1 6070 6304 0 31 0 0 0 chr3 7211933 7211964 -220312614 + AT_rich Low_complexity Low_complexity 1 31 0 2237 67 3 0 chr3 7212922 7213219 -220311359 + AluY SINE Alu 1 298 -13 27 0 0 0 chr3 7214472 7214499 -220310079 + GC_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr3 7214681 7214704 -220309874 + GC_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr3 7215221 7215257 -220309321 + GC_rich Low_complexity Low_complexity 1 36 0 504 220 197 34 chr3 7217499 7217702 -220306876 + MIR SINE MIR 17 237 -25 1839 134 10 3 chr3 7217747 7218039 -220306539 + AluSx SINE Alu 1 294 -18 231 254 34 0 chr3 7218097 7218156 -220306422 + L1MC/D LINE L1 5443 5503 -2305 387 263 59 0 chr3 7218164 7218282 -220306296 + FAM SINE Alu 35 159 -16 818 188 211 32 chr3 7218363 7218761 -220305817 - LTR54B LTR ERV1 0 510 2 1931 124 14 0 chr3 7218774 7219065 -220305513 + AluSx SINE Alu 2 296 -16 2141 86 41 3 chr3 7219622 7219912 -220304666 + AluY SINE Alu 1 301 -10 371 266 107 35 chr3 7220308 7220477 -220304101 - MIR3 SINE MIR -6 202 22 22 35 0 0 chr3 7223092 7223121 -220301457 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr3 7224449 7224470 -220300108 + (A)n Simple_repeat Simple_repeat 1 21 0 2344 70 13 0 chr3 7225067 7225365 -220299213 + AluSq SINE Alu 1 302 -11 1152 149 123 0 chr3 7225803 7225998 -220298580 - MER20 DNA MER1_type 0 219 1 2156 125 0 3 chr3 7226289 7226593 -220297985 + AluSx SINE Alu 1 303 -9 1818 192 68 21 chr3 7226822 7227250 -220297328 + MLT1C LTR MaLR 18 465 -2 874 153 127 0 chr3 7227533 7227683 -220296895 - MER6B DNA MER2_type -5 205 37 1920 122 15 0 chr3 7227733 7228004 -220296574 + AluSx SINE Alu 14 288 -24 539 74 98 0 chr3 7228008 7228171 -220296407 + (TA)n Simple_repeat Simple_repeat 2 180 0 238 274 0 0 chr3 7228191 7228242 -220296336 - MER6B DNA MER2_type -224 52 2 1941 58 81 0 chr3 7229075 7229365 -220295213 - AluY SINE Alu 0 312 2 690 120 88 16 chr3 7229386 7229511 -220295067 - MER46A DNA MER2_type 0 236 103 492 307 81 45 chr3 7229562 7229894 -220294684 + L2 LINE L2 2952 3295 -18 2140 95 18 7 chr3 7231179 7231482 -220293096 + AluSq SINE Alu 1 306 0 2009 138 6 6 chr3 7231795 7232107 -220292471 + AluSx SINE Alu 1 312 0 1605 184 41 17 chr3 7233115 7233475 -220291103 + L1MB3 LINE L1 5350 5914 -257 393 39 0 0 chr3 7233475 7233526 -220291052 + (CA)n Simple_repeat Simple_repeat 1 51 0 1605 184 41 17 chr3 7233526 7233581 -220290997 + L1MB3 LINE L1 5914 5966 -205 827 176 42 18 chr3 7233587 7233752 -220290826 + L1MB3 LINE L1 6014 6182 -1 21 71 0 0 chr3 7233837 7233879 -220290699 + AT_rich Low_complexity Low_complexity 1 42 0 191 303 61 15 chr3 7234103 7234169 -220290409 + MIR3 SINE MIR 111 179 -29 1461 186 13 68 chr3 7234453 7234760 -220289818 + AluJb SINE Alu 1 290 -22 516 264 21 7 chr3 7235093 7235233 -220289345 - MIR SINE MIR -48 214 73 1092 101 0 0 chr3 7235291 7235439 -220289139 - Tigger7 DNA MER2_type -1 2486 2339 346 171 100 0 chr3 7235458 7235528 -220289050 - Tigger7 DNA MER2_type -473 77 1 417 264 162 0 chr3 7235720 7235868 -220288710 + MIR3 SINE MIR 33 204 -4 1983 104 45 3 chr3 7236186 7236475 -220288103 + AluSx SINE Alu 1 301 -11 2279 105 0 0 chr3 7236486 7236781 -220287797 + AluSc SINE Alu 1 295 -14 1697 235 92 74 chr3 7237614 7238407 -220286171 + L1MC4 LINE L1 7235 8041 -1 1306 162 43 43 chr3 7238604 7238839 -220285739 - MER8 DNA MER2_type -1 238 4 2216 98 0 7 chr3 7238941 7239236 -220285342 - AluSx SINE Alu -18 294 2 1234 175 45 65 chr3 7239475 7239543 -220285035 + L1PA16 LINE L1 5875 5943 -223 2141 119 3 0 chr3 7239543 7239836 -220284742 + AluSx SINE Alu 7 300 -12 1234 175 45 65 chr3 7239836 7240059 -220284519 + L1PA16 LINE L1 5943 6160 -6 185 306 69 14 chr3 7240949 7241021 -220283557 - L2 LINE L2 -219 3094 3019 210 282 0 0 chr3 7241100 7241139 -220283439 + MIR SINE MIR 37 75 -133 1184 186 53 56 chr3 7241622 7241907 -220282671 + AluJo SINE Alu 6 289 -23 2489 90 3 0 chr3 7243189 7243500 -220281078 - AluSp SINE Alu 0 313 2 1174 152 11 11 chr3 7243500 7243683 -220280895 - AluJb SINE Alu -5 307 122 291 128 0 21 chr3 7243684 7243731 -220280847 + AluSp SINE Alu 117 162 -141 805 96 0 0 chr3 7243735 7243839 -220280739 - AluJb SINE Alu -202 110 7 690 315 17 9 chr3 7244189 7244421 -220280157 + MIR SINE MIR 12 245 -17 284 363 18 33 chr3 7244479 7244539 -220280039 + L1MDa LINE L1 49 108 -6432 1954 132 3 32 chr3 7244539 7244849 -220279729 + AluSx SINE Alu 1 301 -11 284 363 18 33 chr3 7244849 7245061 -220279517 + L1MDa LINE L1 108 317 -6223 244 327 18 30 chr3 7245612 7245780 -220278798 + L1MDa LINE L1 854 1019 -5511 1059 119 0 92 chr3 7245916 7246101 -220278477 + AluSx SINE Alu 1 168 -144 2104 118 3 37 chr3 7246106 7246429 -220278149 + AluSx SINE Alu 1 312 0 4866 156 35 41 chr3 7246432 7246619 -220277959 + L1M4c LINE L1 721 908 -5476 1949 154 0 0 chr3 7246619 7246912 -220277666 + AluSx SINE Alu 1 293 -19 4866 156 35 41 chr3 7246912 7247787 -220276791 + L1M4c LINE L1 908 1776 -4608 1658 127 0 80 chr3 7247787 7248086 -220276492 + AluSx SINE Alu 1 275 -37 859 149 63 11 chr3 7248088 7248263 -220276315 + L1MB3 LINE L1 5949 6132 -51 1384 134 5 9 chr3 7248268 7248484 -220276094 + AluSg/x SINE Alu 82 296 -16 2131 203 95 98 chr3 7248513 7249249 -220275329 + L1MDa LINE L1 1469 2206 -4334 2183 147 28 22 chr3 7249249 7249610 -220274968 - THE1B LTR MaLR -1 363 1 2131 203 95 98 chr3 7249610 7250044 -220274534 + L1MDa LINE L1 2206 2640 -3900 1569 187 4 4 chr3 7250044 7250312 -220274266 + AluJo SINE Alu 6 273 -39 2131 203 95 98 chr3 7250312 7250817 -220273761 + L1MDa LINE L1 2640 3138 -3402 1296 199 65 43 chr3 7250817 7251094 -220273484 + AluJb SINE Alu 3 285 -17 2131 203 95 98 chr3 7251094 7251376 -220273202 + L1MDa LINE L1 3138 3420 -3120 1049 158 0 0 chr3 7251377 7251529 -220273049 - FRAM SINE Alu -25 151 1 1402 222 113 44 chr3 7251529 7252016 -220272562 + L1MDa LINE L1 3407 3859 -2681 2152 113 0 0 chr3 7252016 7252324 -220272254 - AluSx SINE Alu 0 308 1 2208 106 0 0 chr3 7252330 7252644 -220271934 - AluSx SINE Alu 0 314 1 1402 222 113 44 chr3 7252644 7252759 -220271819 + L1MDa LINE L1 3863 4060 -2480 576 340 20 8 chr3 7253944 7254194 -220270384 + HERVI LTR ERV1 718 970 -6815 5324 309 44 45 chr3 7254420 7255381 -220269197 + HERVI LTR ERV1 954 1914 -5871 3370 55 43 5 chr3 7255381 7255802 -220268776 + L1PA5 LINE L1 5717 6153 -1 5324 309 44 45 chr3 7255802 7259248 -220265330 + HERVI LTR ERV1 1914 5756 -2029 2147 300 41 45 chr3 7260140 7261368 -220263210 + HERVI LTR ERV1 6425 7647 -138 2417 136 5 35 chr3 7262276 7262651 -220261927 - THE1B LTR MaLR 0 364 1 720 83 0 0 chr3 7262747 7262843 -220261735 + AluY SINE Alu 208 303 -8 26 0 0 0 chr3 7263732 7263758 -220260820 + AT_rich Low_complexity Low_complexity 1 26 0 284 202 160 75 chr3 7264326 7264420 -220260158 - MIR SINE MIR -62 146 45 838 160 23 0 chr3 7264942 7265073 -220259505 + AluJo SINE Alu 2 135 -177 2276 115 3 10 chr3 7265091 7265405 -220259173 + AluSx SINE Alu 1 312 0 304 321 274 0 chr3 7265584 7265774 -220258804 - MIR SINE MIR -20 242 1 377 146 0 0 chr3 7266619 7266674 -220257904 + AluSg/x SINE Alu 196 250 -52 887 162 61 92 chr3 7266674 7266714 -220257864 + AluSg/x SINE Alu 83 123 -187 210 37 0 0 chr3 7266714 7266741 -220257837 + (TAA)n Simple_repeat Simple_repeat 3 29 0 2038 109 3 3 chr3 7266741 7267072 -220257506 + AluSx SINE Alu 1 331 0 2258 101 0 0 chr3 7267072 7267359 -220257219 + AluSg SINE Alu 1 287 -23 887 162 61 92 chr3 7267359 7267543 -220257035 + AluSg/x SINE Alu 120 303 -7 1980 139 0 3 chr3 7267680 7267974 -220256604 + AluSx SINE Alu 1 293 -19 1401 164 21 52 chr3 7268894 7269181 -220255397 - AluJb SINE Alu -30 282 5 224 333 216 6 chr3 7269391 7269562 -220255016 + L2 LINE L2 2552 2758 -556 334 328 156 16 chr3 7269708 7269836 -220254742 + L2 LINE L2 3126 3271 -1 189 0 0 0 chr3 7270118 7270139 -220254439 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 274 256 61 12 chr3 7270140 7270222 -220254356 - L2 LINE L2 -18 3295 3210 2013 83 65 7 chr3 7270290 7270567 -220254011 + AluSx SINE Alu 1 293 -19 1581 181 13 32 chr3 7270644 7270953 -220253625 + AluJo SINE Alu 6 308 -4 2333 81 0 0 chr3 7271138 7271434 -220253144 + AluSx SINE Alu 1 296 -16 1754 106 124 4 chr3 7271624 7271899 -220252679 + AluSg SINE Alu 1 308 -2 1599 135 67 28 chr3 7272012 7272294 -220252284 + AluSx SINE Alu 1 293 -19 787 154 0 8 chr3 7272504 7272634 -220251944 + AluJ SINE Alu 1 129 -173 2092 137 0 0 chr3 7272665 7272972 -220251606 + AluSx SINE Alu 1 307 -5 717 175 0 8 chr3 7272972 7273092 -220251486 - AluJo/FLAM SINE Alu -192 120 2 865 184 0 36 chr3 7273110 7273278 -220251300 + AluJ SINE Alu 129 290 -22 1177 130 0 0 chr3 7273486 7273663 -220250915 + AluSq SINE Alu 133 309 -4 303 170 136 78 chr3 7273680 7273922 -220250656 + L1ME4a LINE L1 5538 5835 -286 264 293 113 7 chr3 7274004 7274154 -220250424 + L1ME4a LINE L1 5956 6121 0 24 0 0 0 chr3 7274160 7274184 -220250394 + AT_rich Low_complexity Low_complexity 1 24 0 1902 94 91 0 chr3 7274645 7274921 -220249657 - AluSg SINE Alu -9 301 1 1937 63 0 0 chr3 7274927 7275166 -220249412 - AluY SINE Alu -1 310 72 22 0 0 0 chr3 7275451 7275473 -220249105 + AT_rich Low_complexity Low_complexity 1 22 0 422 229 83 57 chr3 7275574 7275731 -220248847 + MIR3 SINE MIR 48 208 0 732 144 23 0 chr3 7276801 7276933 -220247645 - L1MA7 LINE L1 -2 6289 6155 2154 105 0 0 chr3 7276996 7277292 -220247286 + AluSx SINE Alu 1 296 -16 587 273 126 25 chr3 7277552 7277790 -220246788 - MIR SINE MIR 0 262 1 1493 158 3 44 chr3 7278068 7278365 -220246213 + AluJo SINE Alu 18 302 -10 865 118 7 29 chr3 7278423 7278559 -220246019 + FLAM_C SINE Alu 1 133 0 1859 118 21 3 chr3 7278661 7278949 -220245629 + AluSx SINE Alu 1 293 -19 268 152 30 0 chr3 7280698 7280764 -220243814 + (TTCA)n Simple_repeat Simple_repeat 3 70 0 1274 228 59 62 chr3 7280873 7281182 -220243396 - MER49 LTR ERV1 0 923 614 1993 139 3 3 chr3 7281182 7281492 -220243086 + AluSx SINE Alu 1 310 -2 1274 228 59 62 chr3 7281492 7281586 -220242992 - MER49 LTR ERV1 -309 614 521 1005 86 0 7 chr3 7281588 7281727 -220242851 + AluYb8 SINE Alu 1 138 -180 2218 106 3 0 chr3 7281729 7282040 -220242538 + AluSx SINE Alu 1 312 0 1130 126 32 24 chr3 7282041 7282381 -220242197 - MER49 LTR ERV1 -389 534 160 2451 52 0 3 chr3 7282381 7282691 -220241887 - AluY SINE Alu -2 309 1 251 295 67 0 chr3 7282867 7282972 -220241606 - L1ME4a LINE L1 0 6121 6010 580 343 18 14 chr3 7283030 7283249 -220241329 - MIR SINE MIR -1 261 42 1947 113 15 95 chr3 7283467 7283529 -220241049 + L1PBa LINE L1 1552 1617 -5246 2048 115 0 29 chr3 7283529 7283842 -220240736 + AluSx SINE Alu 1 304 -8 1947 113 15 95 chr3 7283842 7284188 -220240390 + L1PBa LINE L1 1617 1927 -4936 274 171 157 14 chr3 7284339 7284409 -220240169 + L2 LINE L2 3229 3308 -5 827 213 38 85 chr3 7284514 7284622 -220239956 - MIR SINE MIR -10 252 159 1901 117 40 0 chr3 7284622 7284920 -220239658 + AluSx SINE Alu 1 310 -2 827 213 38 85 chr3 7284920 7285046 -220239532 - MIR SINE MIR -103 159 29 592 326 84 45 chr3 7285754 7286273 -220238305 - L2 LINE L2 -12 3260 2684 222 37 0 0 chr3 7286390 7286417 -220238161 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 1958 126 0 3 chr3 7286417 7286702 -220237876 - AluSx SINE Alu -28 284 1 1306 194 0 68 chr3 7286704 7287028 -220237550 - AluJo SINE Alu -10 302 1 359 203 100 144 chr3 7287157 7287428 -220237150 + MLT1K LTR MaLR 330 588 0 288 0 0 0 chr3 7287511 7287543 -220237035 + (A)n Simple_repeat Simple_repeat 1 32 0 891 266 129 6 chr3 7287696 7288030 -220236548 - L3 LINE CR1 -42 1535 1161 242 116 23 0 chr3 7288130 7288173 -220236405 + (CA)n Simple_repeat Simple_repeat 2 45 0 399 293 73 44 chr3 7288232 7288437 -220236141 - MIR SINE MIR -21 241 31 282 297 14 109 chr3 7289108 7289246 -220235332 - MIR SINE MIR -106 156 32 503 259 45 58 chr3 7289289 7289532 -220235046 + L1MD2 LINE L1 5788 6027 -139 1887 137 14 0 chr3 7289532 7289824 -220234754 - AluJo SINE Alu -16 296 1 624 219 14 0 chr3 7289825 7289971 -220234607 + L1MA10 LINE L1 6174 6321 -13 702 75 0 0 chr3 7289997 7290091 -220234487 + L1PA5 LINE L1 6061 6154 0 29 0 0 0 chr3 7290120 7290149 -220234429 + AT_rich Low_complexity Low_complexity 1 29 0 373 217 43 7 chr3 7290185 7290323 -220234255 + (TA)n Simple_repeat Simple_repeat 1 143 0 254 324 102 25 chr3 7290330 7290561 -220234017 + L2 LINE L2 2791 3037 -276 231 307 86 57 chr3 7290597 7290737 -220233841 + L2 LINE L2 3168 3311 -2 1067 201 0 4 chr3 7290753 7290982 -220233596 - AluSg/x SINE Alu 0 312 85 315 207 0 73 chr3 7290987 7291069 -220233509 - AluSp/q SINE Alu -57 246 171 488 239 33 10 chr3 7291177 7291669 -220232909 + GA-rich Low_complexity Low_complexity 1 503 0 324 294 33 11 chr3 7291673 7291765 -220232813 + polypurine Low_complexity Low_complexity 5 98 0 741 165 8 30 chr3 7291810 7291943 -220232635 - FLAM_C SINE Alu -12 131 2 619 307 99 27 chr3 7292109 7292480 -220232098 + L2 LINE L2 2739 3155 -158 1633 157 31 7 chr3 7292480 7292774 -220231804 - AluJo SINE Alu -6 306 6 619 307 99 27 chr3 7292774 7292858 -220231720 + L2 LINE L2 3155 3232 -81 2213 105 0 0 chr3 7292905 7293200 -220231378 + AluSx SINE Alu 1 295 -17 2140 121 0 6 chr3 7293288 7293602 -220230976 + AluSx SINE Alu 1 312 0 304 205 250 58 chr3 7293633 7293789 -220230789 - L1MC4a LINE L1 -1675 6133 5948 * 319 276 0 61 chr3 7293777 7293875 -220230703 - L1MC4 LINE L1 -1339 6703 6612 2104 81 0 32 chr3 7293929 7294238 -220230340 - AluY SINE Alu -1 310 12 204 268 52 31 chr3 7294350 7294447 -220230131 + MIR SINE MIR 85 183 -79 233 213 82 16 chr3 7294685 7294746 -220229832 - LTR8 LTR ERV1 -389 302 238 180 0 0 0 chr3 7294813 7294833 -220229745 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2070 100 0 0 chr3 7294835 7295114 -220229464 - AluY SINE Alu -32 279 1 1831 131 52 3 chr3 7295564 7295854 -220228724 - AluSx SINE Alu -8 304 1 627 197 0 16 chr3 7295859 7295981 -220228597 - FRAM SINE Alu 0 176 57 1922 125 3 27 chr3 7296190 7296487 -220228091 + AluSx SINE Alu 1 290 -22 449 274 37 22 chr3 7296487 7296612 -220227966 + MIR3 SINE MIR 58 187 -21 1691 157 13 53 chr3 7296710 7297028 -220227550 + AluSx SINE Alu 1 305 -7 2254 108 0 0 chr3 7297039 7297346 -220227232 + AluSx SINE Alu 1 307 -5 955 145 0 13 chr3 7297346 7297524 -220227054 + AluSg/x SINE Alu 132 307 0 1318 181 115 0 chr3 7297531 7297819 -220226759 - L1MC2 LINE L1 -22 6322 6002 22 0 0 0 chr3 7297820 7297842 -220226736 + AT_rich Low_complexity Low_complexity 1 22 0 1690 171 4 4 chr3 7297891 7298172 -220226406 - AluJb SINE Alu -31 281 1 1941 118 24 10 chr3 7298412 7298708 -220225870 + AluSx SINE Alu 1 300 -12 1014 146 6 0 chr3 7299004 7299175 -220225403 - AluJ SINE Alu 0 312 141 803 167 0 14 chr3 7299226 7299364 -220225214 - AluJ SINE Alu -175 137 2 363 324 171 0 chr3 7299430 7299600 -220224978 + MIR SINE MIR 52 250 -12 877 212 4 100 chr3 7299821 7300062 -220224516 - MER20 DNA MER1_type 0 219 2 334 191 32 0 chr3 7300181 7300244 -220224334 - MER97a DNA MER1_type? -717 177 113 1767 112 6 74 chr3 7300248 7300393 -220224185 + AluSx SINE Alu 1 115 -197 2160 78 28 0 chr3 7300393 7300677 -220223901 + AluSg SINE Alu 14 305 -5 1767 112 6 74 chr3 7300677 7300843 -220223735 + AluSx SINE Alu 115 291 -21 750 138 9 0 chr3 7300852 7300961 -220223617 + FLAM_C SINE Alu 2 111 -32 504 130 6 62 chr3 7300967 7301128 -220223450 + (GGA)n Simple_repeat Simple_repeat 3 154 0 345 263 32 0 chr3 7301155 7301250 -220223328 - MER97c DNA MER1_type? -966 124 27 213 227 0 30 chr3 7301260 7301326 -220223252 + CT-rich Low_complexity Low_complexity 4 67 0 787 163 7 22 chr3 7301404 7301539 -220223039 + FLAM_C SINE Alu 1 133 0 2496 135 46 14 chr3 7301574 7301604 -220222974 + MER65A LTR ERV1 1 29 -416 1905 126 0 0 chr3 7301604 7301875 -220222703 + AluSx SINE Alu 1 271 -41 2496 135 46 14 chr3 7301875 7302275 -220222303 + MER65A LTR ERV1 29 445 0 2012 127 13 0 chr3 7302768 7303067 -220221511 - AluSg SINE Alu -7 303 1 1801 128 3 61 chr3 7303122 7303435 -220221143 - AluSp SINE Alu -18 295 1 2016 123 14 0 chr3 7304020 7304313 -220220265 - AluSx SINE Alu -15 297 1 1989 135 0 3 chr3 7304317 7304621 -220219957 - AluSq SINE Alu -10 303 1 2132 129 0 0 chr3 7304810 7305121 -220219457 - AluSx SINE Alu -1 311 1 2067 118 10 0 chr3 7305694 7305990 -220218588 + AluSq SINE Alu 1 299 -14 2339 107 22 19 chr3 7305991 7306357 -220218221 + L1PA16 LINE L1 5800 6166 0 2198 157 60 35 chr3 7306480 7306932 -220217646 - MLT1C LTR MaLR 0 467 5 677 159 0 90 chr3 7306971 7307081 -220217497 + MER94 DNA DNA 2 98 -36 2091 110 3 13 chr3 7307081 7307380 -220217198 + AluSx SINE Alu 1 296 -16 677 159 0 90 chr3 7307380 7307414 -220217164 + MER94 DNA DNA 98 133 -1 1211 158 63 60 chr3 7307893 7308178 -220216400 - AluJo SINE Alu -4 308 23 242 303 121 0 chr3 7308594 7308693 -220215885 + L2 LINE L2 3161 3271 -1 1536 110 4 25 chr3 7309422 7309667 -220214911 - AluSq SINE Alu -7 306 67 1229 134 113 79 chr3 7309679 7309971 -220214607 - AluJo SINE Alu 0 302 1 224 339 58 35 chr3 7310171 7310263 -220214315 - MIR SINE MIR 0 262 163 1939 121 0 7 chr3 7310263 7310544 -220214034 - AluSg SINE Alu -31 279 1 224 339 58 35 chr3 7310544 7310622 -220213956 - MIR SINE MIR -99 163 88 187 111 0 0 chr3 7310911 7310938 -220213640 + L2 LINE L2 3268 3294 -19 1248 104 0 0 chr3 7311498 7311671 -220212907 - AluSp SINE Alu -9 304 132 1752 137 53 0 chr3 7311761 7312045 -220212533 - AluJb SINE Alu -13 299 1 427 193 23 23 chr3 7312124 7312212 -220212366 - L2 LINE L2 -5 3308 3221 22 0 0 0 chr3 7312324 7312346 -220212232 + AT_rich Low_complexity Low_complexity 1 22 0 1682 150 10 20 chr3 7313148 7313307 -220211271 - AluJo SINE Alu -22 290 134 2067 103 0 63 chr3 7313307 7313638 -220210940 - AluSg SINE Alu 0 310 1 1682 150 10 20 chr3 7313638 7313771 -220210807 - AluJo SINE Alu -178 134 1 382 296 53 59 chr3 7314081 7314250 -220210328 - MER5A DNA MER1_type 0 189 22 1692 157 7 20 chr3 7314949 7315249 -220209329 - AluSx SINE Alu -16 296 1 21 0 0 0 chr3 7316176 7316197 -220208381 + AT_rich Low_complexity Low_complexity 1 21 0 2094 109 3 0 chr3 7316456 7316760 -220207818 + AluSx SINE Alu 1 305 -7 292 357 62 37 chr3 7317745 7318070 -220206508 + LTR16C LTR ERVL 149 481 -10 516 239 93 71 chr3 7318094 7318413 -220206165 + Charlie7 DNA MER1_type 314 624 -1988 1668 192 13 0 chr3 7318413 7318721 -220205857 + AluJo SINE Alu 1 312 0 516 239 93 71 chr3 7318721 7318834 -220205744 + Charlie7 DNA MER1_type 624 2583 -29 774 90 0 0 chr3 7318854 7318954 -220205624 + HY3 scRNA scRNA 1 100 -1 36 23 0 0 chr3 7318959 7319002 -220205576 + AT_rich Low_complexity Low_complexity 1 43 0 457 152 0 43 chr3 7319185 7319277 -220205301 + AluJ/FRAM SINE Alu 223 310 -2 941 202 86 73 chr3 7319323 7319500 -220205078 + L1M4 LINE L1 5016 5189 -957 2021 136 13 0 chr3 7319500 7319808 -220204770 + AluSx SINE Alu 1 312 0 941 202 86 73 chr3 7319808 7319979 -220204599 + L1M4 LINE L1 5189 5372 -774 1813 129 3 45 chr3 7319979 7320290 -220204288 + AluSx SINE Alu 4 301 -11 941 202 86 73 chr3 7320290 7320312 -220204266 + L1M4 LINE L1 5372 5392 -754 242 188 83 0 chr3 7320322 7320370 -220204208 - L2 LINE L2 0 3272 3221 1399 187 16 50 chr3 7320927 7321248 -220203330 - AluJo SINE Alu -2 310 1 1845 147 3 7 chr3 7321710 7322002 -220202576 - AluJb SINE Alu -21 291 1 189 0 0 0 chr3 7322093 7322114 -220202464 + (A)n Simple_repeat Simple_repeat 1 21 0 6293 94 47 10 chr3 7322573 7323507 -220201071 + LTR5 LTR ERVK 1 969 0 1129 123 6 0 chr3 7324599 7324762 -220199816 - AluJ SINE Alu -14 298 135 201 74 0 0 chr3 7325030 7325057 -220199521 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 378 0 0 0 chr3 7325559 7325601 -220198977 + (TA)n Simple_repeat Simple_repeat 1 42 0 234 0 0 0 chr3 7325600 7325626 -220198952 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 280 238 71 0 chr3 7325626 7325710 -220198868 + L1MC4 LINE L1 6614 6703 -1339 288 0 0 0 chr3 7325719 7325751 -220198827 + (TA)n Simple_repeat Simple_repeat 1 32 0 2064 128 0 10 chr3 7325938 7326250 -220198328 - AluSg SINE Alu -1 309 1 1613 169 7 23 chr3 7326253 7326555 -220198023 - AluJb SINE Alu -15 297 1 444 277 98 27 chr3 7326857 7327041 -220197537 + MIR SINE MIR 66 262 0 802 141 8 0 chr3 7327147 7327275 -220197303 - AluJ SINE Alu -173 129 1 1504 106 78 78 chr3 7327355 7327648 -220196930 - AluSx SINE Alu -18 294 2 435 271 21 14 chr3 7328289 7328433 -220196145 - MIR SINE MIR 0 262 118 2284 80 0 7 chr3 7328433 7328733 -220195845 - AluSx SINE Alu -13 299 2 328 209 60 11 chr3 7328745 7328835 -220195743 + MLT1J LTR MaLR 416 615 0 2238 148 50 5 chr3 7329029 7329429 -220195149 - L1MC1 LINE L1 -5 6328 5911 2165 115 0 0 chr3 7329439 7329743 -220194835 - AluSx SINE Alu -8 304 1 860 272 158 14 chr3 7329757 7330125 -220194453 - LTR33 LTR ERVL -52 469 49 1012 167 9 79 chr3 7330132 7330359 -220194219 - AluJo SINE Alu -101 211 1 2029 113 3 3 chr3 7330550 7330842 -220193736 - AluSg SINE Alu -18 292 1 1395 168 40 37 chr3 7331203 7331500 -220193078 - AluJo SINE Alu -14 298 1 697 318 55 4 chr3 7331511 7331747 -220192831 - MIR SINE MIR -2 260 13 27 62 0 0 chr3 7332222 7332270 -220192308 + AT_rich Low_complexity Low_complexity 1 48 0 284 250 261 11 chr3 7332552 7332640 -220191938 - MIR SINE MIR -61 147 38 1192 253 48 24 chr3 7332729 7333065 -220191513 - ERVL LTR ERVL -2323 3441 3098 443 267 0 0 chr3 7333129 7333234 -220191344 + HERVL LTR ERVL 5269 5373 -281 593 181 0 0 chr3 7333235 7333329 -220191249 + AluJb SINE Alu 177 270 -42 2267 92 3 10 chr3 7334408 7334722 -220189856 + AluSp SINE Alu 2 313 0 1022 262 148 10 chr3 7334826 7335250 -220189328 + MLT1J2 LTR MaLR 1 450 0 722 266 28 28 chr3 7335373 7335587 -220188991 + MIR SINE MIR 1 214 -48 1253 102 43 132 chr3 7336711 7336854 -220187724 - L1MA5A LINE L1 -2 6301 6147 1965 134 0 0 chr3 7336854 7337144 -220187434 - AluSq SINE Alu -23 290 1 1253 102 43 132 chr3 7337144 7337189 -220187389 - L1MA5A LINE L1 -156 6147 6100 1911 121 3 16 chr3 7337189 7337496 -220187082 + AluSg SINE Alu 2 304 -6 2246 107 0 0 chr3 7337498 7337808 -220186770 + AluSx SINE Alu 3 312 0 1253 102 43 132 chr3 7337808 7337942 -220186636 - L1MA5A LINE L1 -204 6099 5991 638 193 25 0 chr3 7338095 7338214 -220186364 - AluJb SINE Alu -190 122 1 337 263 150 0 chr3 7338340 7338473 -220186105 - L3 LINE CR1 -153 1424 1272 1349 151 117 30 chr3 7339262 7339527 -220185051 - AluJo SINE Alu -14 298 11 1012 229 162 75 chr3 7339530 7339901 -220184677 + MLT1K LTR MaLR 27 429 -159 2137 104 0 10 chr3 7339946 7340254 -220184324 - AluSx SINE Alu -7 305 1 2231 179 35 31 chr3 7340254 7340333 -220184245 - Charlie1 DNA MER1_type -11 2750 2673 1907 153 0 0 chr3 7340333 7340633 -220183945 - AluSx SINE Alu -12 300 1 2231 179 35 31 chr3 7340633 7341095 -220183483 - Charlie1 DNA MER1_type -88 2673 2207 661 250 14 7 chr3 7341091 7341231 -220183347 - Charlie1 DNA MER1_type -2620 141 1 * 593 27 13 0 chr3 7341324 7341399 -220183179 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 1601 175 14 0 chr3 7341399 7341677 -220182901 - AluJb SINE Alu -27 285 1 298 342 46 97 chr3 7341745 7341812 -220182766 - L2 LINE L2 -2 3270 3201 3113 173 39 22 chr3 7341812 7342253 -220182325 + MER6A DNA MER2_type 1 433 -432 2180 86 0 3 chr3 7342253 7342545 -220182033 - AluSc SINE Alu -18 291 1 2134 105 3 0 chr3 7342546 7342841 -220181737 - AluSx SINE Alu -16 296 1 3113 173 39 22 chr3 7342841 7342992 -220181586 + MER6A DNA MER2_type 432 605 0 298 342 46 97 chr3 7342992 7343357 -220181221 - L2 LINE L2 -71 3201 2860 2117 114 3 0 chr3 7343582 7343879 -220180699 + AluSg SINE Alu 3 300 -10 1504 253 30 39 chr3 7343998 7344214 -220180364 - LTR16A LTR ERVL 0 450 238 2064 123 0 0 chr3 7344214 7344507 -220180071 + AluSx SINE Alu 1 293 -19 1504 253 30 39 chr3 7344507 7344725 -220179853 - LTR16A LTR ERVL -212 238 20 247 356 9 0 chr3 7344895 7345010 -220179568 + L2 LINE L2 2829 2944 -370 1510 153 142 54 chr3 7345168 7345521 -220179057 - MLT1B LTR MaLR -6 384 1 626 283 76 22 chr3 7345616 7345799 -220178779 - MIR SINE MIR -14 248 49 2257 103 0 0 chr3 7345799 7346110 -220178468 + AluSx SINE Alu 1 311 -1 626 283 76 22 chr3 7346110 7346149 -220178429 - MIR SINE MIR -213 49 14 1718 126 0 37 chr3 7346920 7347214 -220177364 - AluJb SINE Alu -18 294 12 974 243 46 102 chr3 7347533 7348015 -220176563 + L2 LINE L2 2196 2650 -664 444 111 0 0 chr3 7348097 7348169 -220176409 - Alu SINE Alu -2 310 239 326 194 97 0 chr3 7348185 7348257 -220176321 - MER20B DNA MER1_type -498 285 207 2112 104 40 0 chr3 7348334 7348632 -220175946 - AluSx SINE Alu -2 310 1 849 205 21 38 chr3 7348635 7348874 -220175704 - MER20B DNA MER1_type -34 749 515 1054 267 140 32 chr3 7348980 7349444 -220175134 - MER20B DNA MER1_type -268 515 2 818 146 0 8 chr3 7349947 7350070 -220174508 + FLAM_C SINE Alu 6 127 -16 578 254 9 111 chr3 7350097 7350192 -220174386 + MIR SINE MIR 20 82 -180 1870 136 0 17 chr3 7350192 7350486 -220174092 - AluSx SINE Alu -23 289 1 578 254 9 111 chr3 7350486 7350607 -220173971 + MIR SINE MIR 82 214 -48 223 316 143 0 chr3 7350618 7350716 -220173862 + L2 LINE L2 3197 3308 -5 1873 113 57 0 chr3 7351173 7351456 -220173122 + AluSx SINE Alu 5 303 -9 649 298 102 80 chr3 7351499 7351939 -220172639 + L2 LINE L2 2814 3263 -9 185 108 27 0 chr3 7352358 7352395 -220172183 + (CCA)n Simple_repeat Simple_repeat 3 40 0 480 295 95 20 chr3 7352694 7352894 -220171684 - MIR SINE MIR -1 261 47 333 239 14 34 chr3 7353737 7353843 -220170735 + MIR SINE MIR 14 116 -92 457 304 125 18 chr3 7353933 7354157 -220170421 + MIR SINE MIR 3 250 -12 716 201 0 29 chr3 7354215 7354354 -220170224 - FLAM_C SINE Alu -3 140 6 2060 123 0 3 chr3 7354615 7354916 -220169662 - AluSx SINE Alu -12 300 1 254 259 111 0 chr3 7355395 7355476 -220169102 + MIR SINE MIR 114 203 -59 502 281 75 48 chr3 7355519 7355814 -220168764 + MLT1L LTR MaLR 3 305 -310 1921 136 0 28 chr3 7355817 7356134 -220168444 + AluJb SINE Alu 1 308 -4 4731 136 16 6 chr3 7356184 7356888 -220167690 - MER50 LTR ERV1 -23 711 1 711 261 96 5 chr3 7356912 7357130 -220167448 + MLT1L LTR MaLR 368 605 -10 2626 97 28 14 chr3 7357192 7357553 -220167025 - THE1C LTR MaLR 0 375 10 529 262 66 20 chr3 7357556 7357855 -220166723 + MLT1I LTR MaLR 61 409 0 793 147 0 29 chr3 7358018 7358154 -220166424 - FLAM_C SINE Alu 0 133 2 1833 153 3 19 chr3 7358232 7358539 -220166039 + AluJb SINE Alu 1 302 -10 22 0 0 0 chr3 7358544 7358566 -220166012 + AT_rich Low_complexity Low_complexity 1 22 0 1993 115 28 0 chr3 7358676 7358964 -220165614 + AluSx SINE Alu 1 296 -16 1988 144 100 17 chr3 7359232 7359592 -220164986 - MLT1B LTR MaLR 0 390 1 264 261 59 34 chr3 7359684 7359803 -220164775 + L2 LINE L2 3173 3294 -19 2214 101 3 7 chr3 7359894 7360201 -220164377 - AluSx SINE Alu -6 306 1 2185 166 69 51 chr3 7360229 7360723 -220163855 - MLT1D LTR MaLR -2 503 1 206 286 0 0 chr3 7360723 7360772 -220163806 + MIR SINE MIR 159 207 -55 292 323 21 0 chr3 7360961 7361054 -220163524 - MIR3 SINE MIR -6 202 108 278 283 76 0 chr3 7361421 7361513 -220163065 + MLT1K LTR MaLR 210 308 -280 1882 124 9 25 chr3 7361895 7362210 -220162368 - AluSx SINE Alu -2 310 1 251 295 67 0 chr3 7362385 7362490 -220162088 - L1ME4a LINE L1 0 6121 6010 593 338 18 14 chr3 7362548 7362767 -220161811 - MIR SINE MIR -1 261 42 1993 110 12 95 chr3 7362985 7363047 -220161531 + L1PBa LINE L1 1552 1618 -5245 2105 108 0 29 chr3 7363047 7363361 -220161217 + AluSx SINE Alu 1 305 -7 1993 110 12 95 chr3 7363361 7363708 -220160870 + L1PBa LINE L1 1618 1927 -4936 274 171 157 14 chr3 7363859 7363929 -220160649 + L2 LINE L2 3229 3308 -5 817 213 38 85 chr3 7364034 7364142 -220160436 - MIR SINE MIR -10 252 159 1862 122 40 0 chr3 7364142 7364438 -220160140 + AluSx SINE Alu 1 308 -4 817 213 38 85 chr3 7364438 7364564 -220160014 - MIR SINE MIR -103 159 29 592 326 84 45 chr3 7365272 7365791 -220158787 - L2 LINE L2 -12 3260 2684 222 37 0 0 chr3 7365908 7365935 -220158643 + (TTGG)n Simple_repeat Simple_repeat 2 28 0 1958 126 0 3 chr3 7365935 7366220 -220158358 - AluSx SINE Alu -28 284 1 1306 194 0 68 chr3 7366222 7366546 -220158032 - AluJo SINE Alu -10 302 1 359 203 100 144 chr3 7366675 7366946 -220157632 + MLT1K LTR MaLR 330 588 0 360 0 0 0 chr3 7367029 7367069 -220157509 + (A)n Simple_repeat Simple_repeat 1 40 0 874 269 129 6 chr3 7367222 7367556 -220157022 - L3 LINE CR1 -42 1535 1161 263 93 23 0 chr3 7367656 7367699 -220156879 + (CA)n Simple_repeat Simple_repeat 2 45 0 399 293 73 44 chr3 7367758 7367963 -220156615 - MIR SINE MIR -21 241 31 268 304 14 109 chr3 7368634 7368772 -220155806 - MIR SINE MIR -106 156 32 503 259 45 58 chr3 7368815 7369058 -220155520 + L1MD2 LINE L1 5788 6027 -139 1887 137 14 0 chr3 7369058 7369350 -220155228 - AluJo SINE Alu -16 296 1 624 219 14 0 chr3 7369351 7369497 -220155081 + L1MA10 LINE L1 6174 6321 -13 702 75 0 0 chr3 7369523 7369617 -220154961 + L1PA5 LINE L1 6061 6154 0 29 0 0 0 chr3 7369646 7369675 -220154903 + AT_rich Low_complexity Low_complexity 1 29 0 373 217 43 7 chr3 7369711 7369849 -220154729 + (TA)n Simple_repeat Simple_repeat 2 144 0 254 324 102 25 chr3 7369856 7370087 -220154491 + L2 LINE L2 2791 3037 -276 231 307 86 57 chr3 7370123 7370263 -220154315 + L2 LINE L2 3168 3311 -2 1800 150 0 25 chr3 7370279 7370459 -220154119 - AluSx SINE Alu 0 312 142 2262 81 3 7 chr3 7370459 7370756 -220153822 - AluSg SINE Alu -13 297 2 1800 150 0 25 chr3 7370756 7370895 -220153683 - AluSx SINE Alu -170 142 1 186 43 0 0 chr3 7370960 7370983 -220153595 + (TA)n Simple_repeat Simple_repeat 1 23 0 1598 153 20 20 chr3 7370983 7371277 -220153301 - AluJb SINE Alu -14 298 5 252 100 0 0 chr3 7371287 7371327 -220153251 + (TG)n Simple_repeat Simple_repeat 1 40 0 1626 177 7 11 chr3 7371327 7371475 -220153103 - AluJo SINE Alu -31 281 133 2292 61 0 52 chr3 7371475 7371801 -220152777 - AluY SINE Alu -2 309 1 863 150 15 0 chr3 7371801 7371934 -220152644 - AluJo SINE Alu -177 135 1 435 301 58 13 chr3 7372033 7372189 -220152389 + MIR SINE MIR 61 223 -39 334 281 47 64 chr3 7372287 7372458 -220152120 - MIR SINE MIR -50 212 45 1517 179 0 32 chr3 7372662 7372974 -220151604 - AluJo SINE Alu 0 312 11 2054 106 10 0 chr3 7373127 7373419 -220151159 - AluSq SINE Alu -18 295 1 468 0 0 0 chr3 7373760 7373812 -220150766 + (TG)n Simple_repeat Simple_repeat 2 53 0 521 208 31 6 chr3 7373877 7373892 -220150686 + CT-rich Low_complexity Low_complexity 1 14 -149 1817 111 47 11 chr3 7373892 7374171 -220150407 - AluSx SINE Alu -23 289 1 521 208 31 6 chr3 7374171 7374314 -220150264 + CT-rich Low_complexity Low_complexity 14 163 0 2253 99 0 0 chr3 7374314 7374617 -220149961 - AluSx SINE Alu -9 303 1 730 157 0 57 chr3 7374617 7374757 -220149821 - AluJo/FLAM SINE Alu -170 132 1 356 259 61 83 chr3 7374807 7375035 -220149543 + MER102b DNA MER1_type 118 340 -1 579 230 182 7 chr3 7375719 7375867 -220148711 + MER5A DNA MER1_type 1 174 -15 782 172 0 8 chr3 7375881 7376015 -220148563 + FLAM_C SINE Alu 1 133 0 327 65 0 0 chr3 7376015 7376061 -220148517 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 1936 117 17 17 chr3 7376113 7376412 -220148166 + AluSx SINE Alu 1 299 -13 1564 180 79 75 chr3 7376461 7376532 -220148046 - Charlie1b DNA MER1_type -2238 523 454 2075 117 0 3 chr3 7376532 7376831 -220147747 + AluSx SINE Alu 1 298 -14 1564 180 79 75 chr3 7376831 7377280 -220147298 - Charlie1b DNA MER1_type -2307 454 1 2071 110 10 0 chr3 7377383 7377682 -220146896 + AluSq SINE Alu 2 303 -10 236 302 15 65 chr3 7377702 7377820 -220146758 + MIR SINE MIR 46 157 -51 2208 65 0 29 chr3 7377820 7378126 -220146452 + AluY SINE Alu 1 297 -14 236 302 15 65 chr3 7378126 7378145 -220146433 + MIR SINE MIR 157 175 -33 189 94 0 0 chr3 7379170 7379202 -220145376 + (GGTTG)n Simple_repeat Simple_repeat 2 33 0 1758 149 0 34 chr3 7379290 7379613 -220144965 - AluSx SINE Alu 0 312 1 271 167 111 0 chr3 7379748 7379802 -220144776 - MIR SINE MIR -80 182 123 646 208 60 24 chr3 7380053 7380221 -220144357 - MIR SINE MIR -17 245 72 280 231 0 0 chr3 7380485 7380537 -220144041 - 5S rRNA rRNA -69 52 1 2184 153 46 57 chr3 7380719 7381147 -220143431 + L1MB4 LINE L1 5709 6133 -47 1599 175 3 3 chr3 7381147 7381432 -220143146 + AluJb SINE Alu 11 295 -17 2184 153 46 57 chr3 7381432 7381480 -220143098 + L1MB4 LINE L1 6133 6180 0 181 200 25 0 chr3 7382123 7382163 -220142415 + L2 LINE L2 3227 3267 -5 2138 117 3 0 chr3 7382240 7382548 -220142030 + AluSq SINE Alu 1 309 -4 676 260 250 32 chr3 7382920 7383232 -220141346 - MLT1K LTR MaLR -3 585 206 275 262 0 0 chr3 7383252 7383313 -220141265 - MLT1K LTR MaLR -523 65 5 336 255 92 10 chr3 7383398 7383496 -220141082 + MIR SINE MIR 2 107 -155 557 245 182 10 chr3 7383511 7383703 -220140875 - MIR SINE MIR -5 257 33 342 76 0 45 chr3 7383930 7383996 -220140582 + (TTCC)n Simple_repeat Simple_repeat 1 63 0 2006 110 3 3 chr3 7384008 7384299 -220140279 - AluSx SINE Alu -21 291 1 222 224 129 12 chr3 7385360 7385445 -220139133 - MIR SINE MIR -69 193 99 336 198 143 11 chr3 7385592 7385683 -220138895 - MER5A DNA MER1_type -83 106 4 1040 148 61 13 chr3 7385780 7386010 -220138568 + MER33 DNA MER1_type 60 300 -24 1563 164 7 14 chr3 7386010 7386296 -220138282 - AluJo SINE Alu -15 297 14 1002 196 23 46 chr3 7386358 7386577 -220138001 + MER20 DNA MER1_type 1 214 -5 333 284 129 32 chr3 7386597 7386752 -220137826 + L2 LINE L2 3137 3306 -7 216 175 175 0 chr3 7387442 7387499 -220137079 + MIR SINE MIR 34 100 -108 2050 116 0 0 chr3 7387545 7387829 -220136749 - AluSc SINE Alu -25 284 1 707 283 0 12 chr3 7388165 7388338 -220136240 + MIR SINE MIR 68 238 -24 230 256 14 145 chr3 7388394 7388601 -220135977 + L2 LINE L2 3001 3180 -92 418 258 144 6 chr3 7388716 7388883 -220135695 + MER102b DNA MER1_type 103 292 -49 277 267 0 27 chr3 7388900 7388975 -220135603 + MER94 DNA DNA 1 73 -61 1244 136 117 0 chr3 7389139 7389227 -220135351 - MER30 DNA MER1_type 0 230 154 2385 52 0 0 chr3 7389227 7389516 -220135062 + AluSc SINE Alu 1 289 -20 1244 136 117 0 chr3 7389516 7389633 -220134945 - MER30 DNA MER1_type -76 154 1 534 225 113 31 chr3 7389638 7389798 -220134780 - MIR SINE MIR -61 201 29 382 283 5 43 chr3 7389906 7390090 -220134488 + CT-rich Low_complexity Low_complexity 2 178 0 1812 142 14 7 chr3 7390097 7390392 -220134186 - AluJb SINE Alu -15 297 1 183 217 0 0 chr3 7390477 7390537 -220134041 + CT-rich Low_complexity Low_complexity 2 61 0 1710 172 3 3 chr3 7391043 7391339 -220133239 + AluJb SINE Alu 1 296 -16 427 118 24 0 chr3 7391502 7391587 -220132991 + GA-rich Low_complexity Low_complexity 2 88 0 2250 100 0 0 chr3 7392187 7392488 -220132090 + AluSx SINE Alu 1 301 -11 193 313 205 0 chr3 7392530 7392613 -220131965 + L2 LINE L2 3155 3254 -18 268 234 0 0 chr3 7392643 7392707 -220131871 + MIR SINE MIR 67 130 -132 440 280 213 14 chr3 7392925 7393132 -220131446 + MIR SINE MIR 14 261 -1 305 276 83 0 chr3 7393849 7393967 -220130611 + MIR SINE MIR 24 152 -56 308 330 144 0 chr3 7394311 7394484 -220130094 - MIR SINE MIR -30 232 35 23 54 0 0 chr3 7394527 7394564 -220130014 + AT_rich Low_complexity Low_complexity 1 37 0 2023 124 0 16 chr3 7394564 7394878 -220129700 + AluSx SINE Alu 2 310 -2 329 244 47 0 chr3 7395001 7395087 -220129491 + L1MC5 LINE L1 7797 7886 -75 33 0 0 0 chr3 7395117 7395150 -220129428 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr3 7395767 7395796 -220128782 + AT_rich Low_complexity Low_complexity 1 29 0 313 269 37 105 chr3 7395882 7396176 -220128402 - L2 LINE L2 0 3313 3040 949 198 40 0 chr3 7396178 7396380 -220128198 + AluJb SINE Alu 87 296 -16 349 273 77 67 chr3 7396380 7396646 -220127932 - L2 LINE L2 -219 3053 2782 643 233 91 6 chr3 7396765 7396941 -220127637 - MER91A DNA MER1_type -2 194 4 198 283 233 33 chr3 7396978 7397098 -220127480 + L2 LINE L2 3125 3268 -4 1916 146 0 3 chr3 7397219 7397514 -220127064 - AluSx SINE Alu -18 294 1 428 268 141 0 chr3 7397698 7397840 -220126738 - MIR3 SINE MIR -8 200 39 277 255 87 47 chr3 7398105 7398254 -220126324 - L2 LINE L2 -421 2893 2739 717 173 8 30 chr3 7398419 7398552 -220126026 + FLAM_C SINE Alu 2 131 -12 339 167 0 0 chr3 7398557 7398623 -220125955 + G-rich Low_complexity Low_complexity 4 69 0 427 363 87 5 chr3 7398635 7398897 -220125681 - L1MDa LINE L1 -2875 3665 2357 253 391 0 0 chr3 7399007 7399168 -220125410 + T-rich Low_complexity Low_complexity 2 162 0 340 313 119 66 chr3 7400917 7401160 -220123418 + L2 LINE L2 3014 3269 -3 848 259 23 100 chr3 7401335 7401817 -220122761 + MER34 LTR ERV1 1 445 -97 726 124 0 0 chr3 7401818 7401915 -220122663 + FLAM_C SINE Alu 21 117 -26 257 77 0 0 chr3 7402182 7402221 -220122357 - MADE1 DNA Mariner 0 80 42 1006 191 19 10 chr3 7402281 7402490 -220122088 + MER82 DNA MER2_type 10 220 -433 431 95 0 0 chr3 7402723 7402786 -220121792 - Alu SINE Alu -7 303 241 1498 264 19 16 chr3 7402787 7403155 -220121423 + MER82 DNA MER2_type 212 580 -73 1000 251 127 39 chr3 7404961 7405128 -220119450 - MLT1F1 LTR MaLR -1 566 415 1573 122 80 0 chr3 7405128 7405365 -220119213 + AluSx SINE Alu 44 299 -13 1000 251 127 39 chr3 7405365 7405642 -220118936 - MLT1F1 LTR MaLR -152 415 104 234 220 20 140 chr3 7406241 7406341 -220118237 + LTR16A1 LTR ERVL 20 107 -350 385 229 99 15 chr3 7406456 7406587 -220117991 + LTR16A1 LTR ERVL 313 454 -3 2103 104 3 0 chr3 7406972 7407259 -220117319 + AluSq SINE Alu 1 288 -25 281 358 9 18 chr3 7407340 7407449 -220117129 + MIR SINE MIR 14 121 -141 1653 158 0 0 chr3 7407499 7407759 -220116819 - AluJo SINE Alu -21 291 32 781 160 40 20 chr3 7407759 7407909 -220116669 - MLT1D LTR MaLR -24 481 329 239 184 118 0 chr3 7407975 7408051 -220116527 + MER77 LTR ERV1 144 228 -377 919 56 17 39 chr3 7408235 7408493 -220116085 + (TG)n Simple_repeat Simple_repeat 1 252 0 661 228 39 22 chr3 7409119 7409299 -220115279 + MER3 DNA MER1_type 1 183 -26 283 301 67 46 chr3 7409510 7409749 -220114829 + L2 LINE L2 2734 2977 -337 2401 59 0 3 chr3 7409818 7410122 -220114456 + AluY SINE Alu 1 303 -8 2083 100 4 0 chr3 7410131 7410411 -220114167 + AluSx SINE Alu 2 282 -30 459 0 0 0 chr3 7410414 7410465 -220114113 + (CATA)n Simple_repeat Simple_repeat 2 52 0 948 236 75 77 chr3 7410583 7411036 -220113542 - MER110A LTR ERV1 -14 454 3 278 301 68 62 chr3 7411065 7411093 -220113485 + L2 LINE L2 3166 3192 -121 354 23 0 0 chr3 7411093 7411136 -220113442 + (TC)n Simple_repeat Simple_repeat 2 44 0 278 301 68 62 chr3 7411136 7411253 -220113325 + L2 LINE L2 3192 3312 -1 333 295 19 9 chr3 7412024 7412129 -220112449 - MLT1K LTR MaLR -6 582 477 794 254 11 0 chr3 7412502 7412679 -220111899 + MER5A DNA MER1_type 3 181 -8 1960 154 0 0 chr3 7412939 7413238 -220111340 - AluSx SINE Alu -13 299 1 1172 98 0 0 chr3 7413264 7413427 -220111151 - AluYa5 SINE Alu -16 295 133 2563 40 0 0 chr3 7413427 7413729 -220110849 - AluYb8 SINE Alu -16 302 1 299 269 172 27 chr3 7413737 7413923 -220110655 + L1ME4a LINE L1 5682 5894 -227 1011 243 109 76 chr3 7413956 7414123 -220110455 - MLT1F1 LTR MaLR -1 566 406 1506 136 81 0 chr3 7414123 7414359 -220110219 + AluSx SINE Alu 44 298 -14 1011 243 109 76 chr3 7414359 7414636 -220109942 - MLT1F1 LTR MaLR -161 406 104 266 333 11 0 chr3 7414758 7414848 -220109730 - MLT1F1 LTR MaLR -498 95 5 669 227 0 0 chr3 7415418 7415537 -220109041 + FLAM_A SINE Alu 5 123 -10 798 267 89 71 chr3 7416679 7416744 -220107834 - MLT1K LTR MaLR -63 525 463 3531 126 4 28 chr3 7416744 7417284 -220107294 - MER1A DNA MER1_type 0 527 1 798 267 89 71 chr3 7417284 7417611 -220106967 - MLT1K LTR MaLR -125 463 126 290 216 0 18 chr3 7417829 7417940 -220106638 + (TTTA)n Simple_repeat Simple_repeat 2 110 0 292 225 113 0 chr3 7417955 7418026 -220106552 + L2 LINE L2 3194 3272 0 2670 120 31 2 chr3 7418043 7418459 -220106119 - MSTA LTR MaLR 0 428 1 520 171 202 0 chr3 7418699 7418828 -220105750 - MER5A DNA MER1_type -29 160 6 479 233 133 13 chr3 7419348 7419498 -220105080 - MIR SINE MIR -74 188 21 911 176 23 0 chr3 7419952 7420128 -220104450 - FRAM SINE Alu -1 175 1 2057 113 7 3 chr3 7420319 7420610 -220103968 + AluSq SINE Alu 1 292 -21 1224 135 45 0 chr3 7420758 7420958 -220103620 - L1MA5A LINE L1 -4 6293 6085 2892 90 37 62 chr3 7421233 7421492 -220103086 + MER39B LTR ERV1 1 246 -407 959 194 105 112 chr3 7421492 7421823 -220102755 + AluSx SINE Alu 1 329 0 2892 90 37 62 chr3 7421823 7422026 -220102552 + MER39B LTR ERV1 246 453 -200 802 238 31 36 chr3 7421998 7422221 -220102357 + Charlie2a DNA MER1_type 1505 1726 -1136 * 2157 156 104 5 chr3 7422221 7422645 -220101933 + Tigger2 DNA MER2_type 1 466 -2252 766 216 0 0 chr3 7422651 7422799 -220101779 + AluSg/x SINE Alu 137 284 -28 228 35 0 0 chr3 7422809 7422838 -220101740 + (CA)n Simple_repeat Simple_repeat 1 29 0 2344 124 48 3 chr3 7422844 7423215 -220101363 + Tigger2 DNA MER2_type 2331 2718 0 2018 213 171 41 chr3 7423218 7423627 -220100951 + Charlie2a DNA MER1_type 1727 2082 -780 2351 113 0 3 chr3 7423627 7423937 -220100641 + AluJo SINE Alu 1 309 -3 2018 213 171 41 chr3 7423937 7424405 -220100173 + Charlie2a DNA MER1_type 2082 2718 -144 3121 124 115 17 chr3 7424983 7425572 -220099006 + LTR24C LTR ERV1 2 466 -1 345 93 0 0 chr3 7425752 7425806 -220098772 + (CA)n Simple_repeat Simple_repeat 1 54 0 260 296 111 19 chr3 7426071 7426233 -220098345 - MIR SINE MIR -67 195 19 600 210 50 22 chr3 7426316 7426497 -220098081 - MIR SINE MIR -49 213 28 2231 107 0 3 chr3 7426821 7427120 -220097458 + AluSx SINE Alu 4 301 -11 21 0 0 0 chr3 7428788 7428809 -220095769 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr3 7429885 7429910 -220094668 + AT_rich Low_complexity Low_complexity 1 25 0 568 229 41 0 chr3 7431219 7431341 -220093237 + FLAM_A SINE Alu 1 127 -6 23 0 0 0 chr3 7431341 7431364 -220093214 + AT_rich Low_complexity Low_complexity 1 23 0 857 200 62 19 chr3 7431898 7432108 -220092470 - MER20 DNA MER1_type 0 219 1 260 275 142 8 chr3 7432580 7432700 -220091878 + L2 LINE L2 2923 3058 -214 609 217 141 30 chr3 7432904 7433102 -220091476 + MIR SINE MIR 43 262 0 235 139 0 0 chr3 7433651 7433687 -220090891 + LTR33 LTR ERVL 3 38 -483 230 299 21 21 chr3 7433954 7434051 -220090527 + LTR33 LTR ERVL 411 507 -14 243 267 28 125 chr3 7434481 7434657 -220089921 + MER5B DNA MER1_type 3 161 -17 272 272 62 0 chr3 7434714 7434795 -220089783 + L2 LINE L2 3150 3235 -37 197 275 114 30 chr3 7435028 7435159 -220089419 - MIR3 SINE MIR -66 142 1 195 229 14 71 chr3 7435466 7435536 -220089042 - MER5A DNA MER1_type -36 153 88 354 259 47 57 chr3 7435757 7435950 -220088628 + MIR3 SINE MIR 3 193 -15 330 45 0 0 chr3 7435958 7436002 -220088576 + (CA)n Simple_repeat Simple_repeat 2 45 0 27 0 0 0 chr3 7439068 7439095 -220085483 + GC_rich Low_complexity Low_complexity 1 27 0 2288 64 4 0 chr3 7440363 7440644 -220083934 - AluY SINE Alu -29 282 1 31 0 0 0 chr3 7441602 7441633 -220082945 + AT_rich Low_complexity Low_complexity 1 31 0 1689 86 9 0 chr3 7441633 7441866 -220082712 - L1MA2 LINE L1 0 6304 6070 1932 144 0 34 chr3 7441955 7442275 -220082303 - AluJo SINE Alu -3 309 1 21 0 0 0 chr3 7443660 7443681 -220080897 + AT_rich Low_complexity Low_complexity 1 21 0 2470 84 0 0 chr3 7444343 7444640 -220079938 - AluSq SINE Alu -16 297 1 2057 121 0 0 chr3 7446919 7447201 -220077377 + AluSx SINE Alu 1 282 -30 207 0 0 0 chr3 7447206 7447229 -220077349 + (CA)n Simple_repeat Simple_repeat 2 24 0 202 222 79 32 chr3 7447288 7447351 -220077227 - MIR3 SINE MIR -14 194 129 961 105 14 0 chr3 7447665 7447808 -220076770 - AluSc SINE Alu -1 308 164 255 219 110 24 chr3 7447866 7447948 -220076630 + L2 LINE L2 3184 3272 0 443 271 7 52 chr3 7448007 7448162 -220076416 - MER103 DNA DNA 0 166 19 337 288 87 62 chr3 7448714 7449082 -220075496 + L2 LINE L2 2919 3295 -18 2163 95 18 7 chr3 7450365 7450668 -220073910 + AluSq SINE Alu 1 306 0 1937 143 7 7 chr3 7450982 7451283 -220073295 + AluSx SINE Alu 1 301 -11 1591 184 41 17 chr3 7452302 7452662 -220071916 + L1MB3 LINE L1 5350 5914 -257 393 39 0 0 chr3 7452662 7452713 -220071865 + (CA)n Simple_repeat Simple_repeat 1 51 0 1591 184 41 17 chr3 7452713 7452768 -220071810 + L1MB3 LINE L1 5914 5966 -205 866 174 30 18 chr3 7452774 7452941 -220071637 + L1MB3 LINE L1 6014 6182 -1 21 71 0 0 chr3 7453026 7453068 -220071510 + AT_rich Low_complexity Low_complexity 1 42 0 1476 186 13 68 chr3 7453643 7453950 -220070628 + AluJb SINE Alu 1 290 -22 476 264 21 7 chr3 7454283 7454423 -220070155 - MIR SINE MIR -48 214 73 1090 101 0 0 chr3 7454481 7454629 -220069949 - Tigger7 DNA MER2_type -1 2490 2343 344 171 100 0 chr3 7454648 7454718 -220069860 - Tigger7 DNA MER2_type -473 77 1 368 259 168 0 chr3 7454915 7455058 -220069520 + MIR3 SINE MIR 38 204 -4 1998 104 45 3 chr3 7455376 7455665 -220068913 + AluSx SINE Alu 1 301 -11 2312 78 7 0 chr3 7455676 7455972 -220068606 + AluY SINE Alu 1 298 -13 842 102 0 121 chr3 7455973 7456139 -220068439 + THE1C LTR MaLR 230 375 0 188 359 60 17 chr3 7456642 7456759 -220067819 - L2 LINE L2 -10 3262 3141 191 297 55 22 chr3 7456785 7456876 -220067702 - MIR3 SINE MIR -14 194 101 6616 33 0 0 chr3 7457028 7457911 -220066667 - L1P2 LINE L1 -669 5485 4603 2345 87 0 3 chr3 7557983 7558283 -219966295 + AluY SINE Alu 1 299 -12 2173 104 3 3 chr3 7558436 7558724 -219965854 + AluSq SINE Alu 1 288 -25 278 358 9 18 chr3 7558805 7558914 -219965664 + MIR SINE MIR 14 121 -141 1762 164 21 3 chr3 7558964 7559250 -219965328 - AluJb SINE Alu -21 291 1 1314 149 0 0 chr3 7559250 7559451 -219965127 - LTR26B LTR ERV1 -327 204 4 415 253 114 32 chr3 7559617 7559775 -219964803 - MIR3 SINE MIR 0 208 38 1071 103 0 7 chr3 7560170 7560316 -219964262 - AluSg/x SINE Alu -30 279 135 412 351 0 0 chr3 7561433 7561544 -219963034 + L2 LINE L2 3157 3267 -5 23 0 0 0 chr3 7561552 7561575 -219963003 + AT_rich Low_complexity Low_complexity 1 23 0 2737 103 8 5 chr3 7561634 7562021 -219962557 + L1PB1 LINE L1 5763 6150 -1 298 347 200 7 chr3 7562915 7563065 -219961513 - MER5A DNA MER1_type -10 179 1 216 210 65 32 chr3 7563085 7563147 -219961431 + L2 LINE L2 3167 3230 -42 216 171 0 0 chr3 7563175 7563210 -219961368 + (TGGA)n Simple_repeat Simple_repeat 3 37 0 377 358 23 6 chr3 7563585 7563761 -219960817 + MIR3 SINE MIR 17 195 -13 1862 199 16 101 chr3 7563853 7564400 -219960178 + MLT1D LTR MaLR 3 503 -2 220 324 14 0 chr3 7564580 7564654 -219959924 + (TA)n Simple_repeat Simple_repeat 1 75 0 208 274 170 28 chr3 7564899 7565005 -219959573 - MIR3 SINE MIR -4 204 84 315 281 183 7 chr3 7565381 7565534 -219959044 - MIR3 SINE MIR -14 194 15 227 291 0 0 chr3 7566441 7566496 -219958082 - MIR3 SINE MIR 0 208 154 412 263 53 0 chr3 7566498 7566631 -219957947 + MER117 DNA MER1_type 2 141 -56 198 208 260 39 chr3 7566687 7566764 -219957814 - MIR3 SINE MIR -52 156 63 206 373 15 0 chr3 7567137 7567204 -219957374 - L2 LINE L2 -7 3265 3198 2230 123 3 0 chr3 7567371 7567680 -219956898 + AluSq SINE Alu 1 310 -3 1215 260 59 52 chr3 7567770 7568231 -219956347 - L1ME3A LINE L1 -1 6169 5706 457 78 16 0 chr3 7568253 7568317 -219956261 - MER41B LTR ERV1 -90 545 481 1108 287 89 2 chr3 7568317 7568711 -219955867 - L1ME3A LINE L1 -452 5718 5291 842 228 216 8 chr3 7568788 7569266 -219955312 - LTR50 LTR ERVL 0 795 124 1521 164 115 86 chr3 7569408 7569925 -219954653 - LTR36 LTR ERV1 0 611 1 643 187 66 30 chr3 7569943 7570130 -219954448 - MIR SINE MIR -21 241 47 1313 178 24 0 chr3 7571037 7571250 -219953328 - AluJo SINE Alu -86 226 9 357 301 56 109 chr3 7571291 7571666 -219952912 + L2 LINE L2 2918 3272 0 2098 196 107 11 chr3 7572068 7572350 -219952228 - MLT1D LTR MaLR 0 505 161 1774 174 13 30 chr3 7572350 7572649 -219951929 - AluJo SINE Alu -18 294 1 2098 196 107 11 chr3 7572649 7572824 -219951754 - MLT1D LTR MaLR -344 161 4 22 35 0 0 chr3 7574404 7574433 -219950145 + AT_rich Low_complexity Low_complexity 1 29 0 278 296 61 17 chr3 7574911 7575026 -219949552 + MIR SINE MIR 137 256 -6 31 76 0 0 chr3 7575378 7575444 -219949134 + AT_rich Low_complexity Low_complexity 1 66 0 351 78 0 0 chr3 7575693 7575744 -219948834 + (TG)n Simple_repeat Simple_repeat 2 52 0 337 276 0 11 chr3 7575746 7575833 -219948745 - LTR67 LTR ERVL -12 545 460 345 235 43 17 chr3 7575842 7575957 -219948621 - L1ME LINE L1 -374 5747 5630 298 290 30 53 chr3 7576489 7576620 -219947958 + L2 LINE L2 3182 3309 -4 201 237 0 0 chr3 7577348 7577407 -219947171 + (TA)n Simple_repeat Simple_repeat 2 60 0 721 251 55 90 chr3 7577473 7577854 -219946724 + MLT1I LTR MaLR 31 402 -7 203 296 59 89 chr3 7577863 7577998 -219946580 - MIR SINE MIR -61 147 17 448 305 68 34 chr3 7579141 7579179 -219945399 - Charlie8 DNA MER1_type -4 1413 1378 393 22 0 0 chr3 7579179 7579225 -219945353 + (CA)n Simple_repeat Simple_repeat 2 47 0 448 305 68 34 chr3 7579225 7579485 -219945093 - Charlie8 DNA MER1_type -39 1378 5 331 195 26 26 chr3 7580010 7580087 -219944491 - MLT1L LTR MaLR -536 79 3 200 298 0 0 chr3 7580102 7580159 -219944419 - L2 LINE L2 -2 3311 3255 21 36 0 0 chr3 7580236 7580264 -219944314 + AT_rich Low_complexity Low_complexity 1 28 0 1061 267 70 26 chr3 7580297 7580862 -219943716 - L2 LINE L2 -159 3154 2570 1794 161 7 20 chr3 7580891 7581189 -219943389 + AluJb SINE Alu 1 294 -18 207 0 0 0 chr3 7581192 7581215 -219943363 + (TA)n Simple_repeat Simple_repeat 2 24 0 223 338 13 0 chr3 7582358 7582435 -219942143 - MIR SINE MIR -63 145 68 192 293 35 0 chr3 7583163 7583221 -219941357 + MIR3 SINE MIR 112 171 -37 375 301 155 14 chr3 7583934 7584153 -219940425 - MIR SINE MIR 0 262 13 203 79 26 0 chr3 7585150 7585188 -219939390 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 911 146 189 5 chr3 7586031 7586216 -219938362 - MER20 DNA MER1_type 0 219 1 23 0 0 0 chr3 7586379 7586402 -219938176 + AT_rich Low_complexity Low_complexity 1 23 0 2270 112 0 0 chr3 7586430 7586733 -219937845 - AluSx SINE Alu -9 303 1 330 365 0 0 chr3 7586889 7587004 -219937574 - MIR3 SINE MIR -23 185 71 291 163 0 0 chr3 7587004 7587053 -219937525 + L1MC3 LINE L1 7045 7093 -692 283 262 24 12 chr3 7587057 7587141 -219937437 + MLT1F1 LTR MaLR 40 124 -443 2087 191 66 58 chr3 7587147 7587737 -219936841 + L1MC3 LINE L1 7191 7785 0 2202 112 0 13 chr3 7588524 7588827 -219935751 - AluSx SINE Alu -13 299 1 2071 124 0 0 chr3 7589828 7590133 -219934445 + AluSx SINE Alu 1 305 0 522 281 67 12 chr3 7590547 7590711 -219933867 - MER5B DNA MER1_type 0 178 6 273 87 0 43 chr3 7591423 7591469 -219933109 + L2 LINE L2 3195 3238 -75 2165 108 3 0 chr3 7592081 7592376 -219932202 + AluSp SINE Alu 1 296 -17 388 363 57 6 chr3 7592564 7592721 -219931857 - MIR3 SINE MIR -24 184 20 28 0 0 0 chr3 7592829 7592857 -219931721 + AT_rich Low_complexity Low_complexity 1 28 0 1734 190 7 3 chr3 7592905 7593200 -219931378 + AluSx SINE Alu 1 296 -16 21 0 0 0 chr3 7593277 7593298 -219931280 + AT_rich Low_complexity Low_complexity 1 21 0 2361 123 5 32 chr3 7596714 7597088 -219927490 - THE1B LTR MaLR 0 364 1 8147 127 30 8 chr3 7597417 7598729 -219925849 - Tigger1 DNA MER2_type 0 2418 1079 3596 134 107 6 chr3 7598718 7599354 -219925224 - Tigger1 DNA MER2_type -1656 762 63 * 341 211 273 19 chr3 7601206 7601367 -219923211 - L1MC4a LINE L1 -1859 5949 5748 1690 80 0 0 chr3 7601502 7601715 -219922863 + AluSg SINE Alu 1 213 -97 401 236 183 21 chr3 7601757 7601948 -219922630 - L1MC4a LINE L1 -2291 5517 5296 549 300 143 29 chr3 7601984 7602528 -219922050 - L1MC4a LINE L1 -908 5238 4633 26 0 0 0 chr3 7602799 7602825 -219921753 + AT_rich Low_complexity Low_complexity 1 26 0 385 225 36 94 chr3 7603886 7603994 -219920584 + L2 LINE L2 3182 3282 -31 2533 92 30 11 chr3 7603994 7604362 -219920216 - THE1C LTR MaLR 0 375 1 385 225 36 94 chr3 7604362 7604391 -219920187 + L2 LINE L2 3282 3311 -2 562 280 13 13 chr3 7604395 7604545 -219920033 + MIR SINE MIR 34 183 -79 1659 191 40 3 chr3 7604798 7605123 -219919455 + MER1B DNA MER1_type 1 337 0 266 284 105 11 chr3 7605214 7605309 -219919269 - L3 LINE CR1 -278 1299 1196 305 261 76 32 chr3 7605883 7606040 -219918538 - L1ME LINE L1 -283 5838 5675 269 254 211 7 chr3 7606057 7606199 -219918379 - L1ME LINE L1 -1445 4701 4531 1896 147 18 0 chr3 7607095 7607380 -219917198 + AluJb SINE Alu 9 298 -14 254 267 67 33 chr3 7607620 7607710 -219916868 + MIR SINE MIR 13 105 -157 1088 122 0 33 chr3 7610864 7611044 -219913534 + AluSg/x SINE Alu 124 297 -12 186 43 0 0 chr3 7611355 7611378 -219913200 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 24 32 0 0 chr3 7614399 7614430 -219910148 + AT_rich Low_complexity Low_complexity 1 31 0 427 255 135 20 chr3 7616204 7616404 -219908174 - MIR SINE MIR -9 253 31 256 282 0 113 chr3 7616914 7617038 -219907540 - MIR3 SINE MIR -12 196 87 2463 66 0 0 chr3 7617707 7618010 -219906568 - AluY SINE Alu -8 303 1 244 376 60 8 chr3 7618120 7618237 -219906341 + L2 LINE L2 3191 3313 0 276 274 140 18 chr3 7619304 7619361 -219905217 + L1MC/D LINE L1 5352 5401 -2407 1709 149 72 0 chr3 7619361 7619637 -219904941 - AluSx SINE Alu -16 296 1 276 274 140 18 chr3 7619637 7619743 -219904835 + L1MC/D LINE L1 5401 5535 -2273 515 297 0 0 chr3 7619915 7620026 -219904552 - MER81 DNA DNA 0 114 4 709 254 215 0 chr3 7620745 7620950 -219903628 + MIR SINE MIR 6 254 -8 391 352 49 6 chr3 7621218 7621380 -219903198 + MIR SINE MIR 81 249 -13 474 315 34 0 chr3 7621682 7621828 -219902750 + MER117 DNA MER1_type 11 161 -36 220 214 18 18 chr3 7621875 7621931 -219902647 + (TG)n Simple_repeat Simple_repeat 1 56 0 475 233 302 0 chr3 7621975 7622147 -219902431 - MIR SINE MIR -10 252 29 2306 67 35 0 chr3 7622149 7622432 -219902146 - AluY SINE Alu -18 293 1 1852 156 3 7 chr3 7623205 7623506 -219901072 + AluJb SINE Alu 1 300 -12 505 288 113 19 chr3 7624033 7624245 -219900333 + HAL1 LINE L1 434 665 -1842 442 300 88 0 chr3 7624431 7624714 -219899864 + HAL1 LINE L1 984 1291 -1216 1837 238 175 50 chr3 7624716 7625635 -219898943 + HAL1 LINE L1 1340 2373 -134 212 292 79 22 chr3 7626063 7626152 -219898426 - MIR3 SINE MIR -25 183 90 2104 141 13 0 chr3 7626283 7626589 -219897989 + AluJo SINE Alu 1 310 -2 1676 209 107 43 chr3 7626942 7627454 -219897124 + MER90 LTR ERV1 70 614 0 575 204 160 18 chr3 7628055 7628280 -219896298 + MER112 DNA MER1_type 4 260 0 1688 148 17 31 chr3 7629665 7629956 -219894622 - AluJb SINE Alu -17 295 9 226 229 0 0 chr3 7630476 7630537 -219894041 + T-rich Low_complexity Low_complexity 1 61 0 8156 14 0 0 chr3 7630539 7631772 -219892806 - L1HS LINE L1 0 6155 4923 833 129 103 189 chr3 7632008 7632142 -219892436 + MER33 DNA MER1_type 1 145 -2440 1720 167 20 7 chr3 7632142 7632436 -219892142 - AluJb SINE Alu -14 298 1 833 129 103 189 chr3 7632436 7632651 -219891927 + MER33 DNA MER1_type 145 320 -4 533 236 48 36 chr3 7632878 7633043 -219891535 - MER5B DNA MER1_type -1 177 11 264 375 17 0 chr3 7633338 7633458 -219891120 + MIR SINE MIR 8 129 -133 854 131 77 0 chr3 7633647 7633777 -219890801 - FRAM SINE Alu -17 159 20 598 109 148 10 chr3 7633826 7633927 -219890651 + FLAM_C SINE Alu 5 119 -24 23 0 0 0 chr3 7633932 7633955 -219890623 + AT_rich Low_complexity Low_complexity 1 23 0 4654 90 17 21 chr3 7634426 7634620 -219889958 + PABL_A LTR ERV1 1 194 -466 2233 94 0 7 chr3 7634620 7634917 -219889661 - AluSx SINE Alu -17 295 1 4654 90 17 21 chr3 7634917 7635376 -219889202 + PABL_A LTR ERV1 194 651 -9 1798 100 37 23 chr3 7636983 7637283 -219887295 - AluSq SINE Alu -9 304 1 1022 210 189 7 chr3 7637841 7638055 -219886523 + MER2 DNA MER2_type 1 283 -61 2327 94 0 0 chr3 7638055 7638354 -219886224 - AluSx SINE Alu -9 303 5 1022 210 189 7 chr3 7638354 7638430 -219886148 + MER2 DNA MER2_type 283 344 0 272 70 23 0 chr3 7638430 7638473 -219886105 + (GA)n Simple_repeat Simple_repeat 1 44 0 3013 251 57 23 chr3 7638501 7639531 -219885047 + L1ME1 LINE L1 3292 4356 -1790 2794 233 45 80 chr3 7639575 7639633 -219884945 + L1ME1 LINE L1 5353 5412 -754 1522 193 14 14 chr3 7639633 7639918 -219884660 + AluJb SINE Alu 1 285 -27 2794 233 45 80 chr3 7639918 7639980 -219884598 + L1ME1 LINE L1 5412 5475 -691 2060 131 7 0 chr3 7639980 7640271 -219884307 - AluSg SINE Alu -17 293 1 2794 233 45 80 chr3 7640271 7640774 -219883804 + L1ME1 LINE L1 5475 5994 -172 2196 112 0 0 chr3 7640774 7641068 -219883510 + AluSg SINE Alu 1 294 -16 2794 233 45 80 chr3 7641068 7641251 -219883327 + L1ME1 LINE L1 5994 6111 -55 2008 138 153 42 chr3 7641251 7641324 -219883254 - MSTA LTR MaLR 0 428 365 2441 49 0 30 chr3 7641324 7641629 -219882949 + AluY SINE Alu 1 296 -15 2008 138 153 42 chr3 7641629 7641940 -219882638 - MSTA LTR MaLR -63 365 1 2794 233 45 80 chr3 7641940 7641989 -219882589 + L1ME1 LINE L1 6111 6160 -6 1738 139 58 41 chr3 7642455 7642750 -219881828 + AluSx SINE Alu 1 300 -12 180 77 0 0 chr3 7643089 7643115 -219881463 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 546 278 131 0 chr3 7643190 7643366 -219881212 - MIR SINE MIR -32 230 32 670 178 8 0 chr3 7643706 7643824 -219880754 - MLT1D LTR MaLR 0 505 387 2266 104 0 0 chr3 7644033 7644331 -219880247 - AluSx SINE Alu -3 309 12 1523 192 3 36 chr3 7644554 7644862 -219879716 + AluJo SINE Alu 1 298 -14 858 168 0 0 chr3 7644906 7645031 -219879547 + AluJb SINE Alu 1 125 -187 1845 158 18 0 chr3 7645892 7646176 -219878402 + AluJo SINE Alu 1 289 -23 480 62 37 0 chr3 7646186 7646267 -219878311 + (TA)n Simple_repeat Simple_repeat 1 84 0 216 144 22 0 chr3 7646538 7646584 -219877994 + MIR SINE MIR 99 146 -62 2004 137 0 22 chr3 7646699 7647014 -219877564 + AluSx SINE Alu 3 310 -2 4460 183 19 25 chr3 7647295 7648175 -219876403 - L1MB8 LINE L1 0 6178 5304 833 199 6 0 chr3 7648178 7648334 -219876244 - FRAM SINE Alu 0 40 1 2054 181 57 53 chr3 7648336 7648464 -219876114 - L1MB8 LINE L1 -830 5316 5190 2039 125 4 4 chr3 7648464 7648766 -219875812 - AluSx SINE Alu 0 302 1 2054 181 57 53 chr3 7648766 7648891 -219875687 - L1MB8 LINE L1 -956 5190 5067 2267 110 0 10 chr3 7648891 7649200 -219875378 + AluSx SINE Alu 6 311 -1 2054 181 57 53 chr3 7649200 7649469 -219875109 - L1MB8 LINE L1 -1079 5067 4789 297 172 16 141 chr3 7649890 7650018 -219874560 + MLT1H LTR MaLR 438 549 0 376 249 115 91 chr3 7650106 7650164 -219874414 - L1ME4a LINE L1 -232 5889 5834 1887 135 7 0 chr3 7650164 7650445 -219874133 + AluSg SINE Alu 13 295 -15 376 249 115 91 chr3 7650445 7650639 -219873939 - L1ME4a LINE L1 -287 5834 5631 2154 102 10 7 chr3 7650886 7651180 -219873398 + AluSq SINE Alu 1 295 -18 185 0 0 39 chr3 7651285 7651311 -219873267 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 209 173 154 19 chr3 7651398 7651450 -219873128 + L2 LINE L2 3252 3310 -3 2240 100 0 3 chr3 7651470 7651759 -219872819 + AluSx SINE Alu 1 288 -24 276 284 0 68 chr3 7654554 7654642 -219869936 - L2 LINE L2 -23 3249 3168 213 39 0 0 chr3 7655828 7655854 -219868724 + (TTG)n Simple_repeat Simple_repeat 2 27 0 248 385 57 0 chr3 7657051 7657173 -219867405 + MIR SINE MIR 21 149 -113 1029 186 9 24 chr3 7658760 7658901 -219865677 + MER3 DNA MER1_type 2 141 -68 1936 143 7 7 chr3 7658901 7659188 -219865390 + AluSx SINE Alu 1 287 -25 1029 186 9 24 chr3 7659188 7659256 -219865322 + MER3 DNA MER1_type 141 208 -1 299 269 86 30 chr3 7659350 7659584 -219864994 + L1ME4a LINE L1 5873 6119 -2 685 224 39 86 chr3 7659671 7659926 -219864652 + MER112 DNA MER1_type 6 248 -12 1263 124 0 43 chr3 7660057 7660243 -219864335 + AluSx SINE Alu 1 178 -134 424 246 53 18 chr3 7660906 7661020 -219863558 + MIR3 SINE MIR 14 131 -77 1848 146 35 0 chr3 7662044 7662215 -219862363 - AluSx SINE Alu -14 298 112 414 0 0 0 chr3 7662215 7662261 -219862317 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1848 146 35 0 chr3 7662261 7662377 -219862201 - AluSx SINE Alu -200 112 1 257 109 455 0 chr3 7662766 7662821 -219861757 + MADE1 DNA Mariner 1 80 0 2170 100 7 0 chr3 7663272 7663583 -219860995 + AluSx SINE Alu 1 313 0 1900 167 0 0 chr3 7663602 7663890 -219860688 - AluJb SINE Alu -19 293 6 939 117 7 15 chr3 7663890 7664027 -219860551 - AluJb SINE Alu -176 136 1 339 314 58 19 chr3 7664185 7664341 -219860237 - MIR3 SINE MIR -8 200 39 2003 140 10 0 chr3 7664537 7664830 -219859748 + AluSx SINE Alu 1 296 -16 210 333 0 43 chr3 7665405 7665474 -219859104 - L3 LINE CR1 -4 1573 1508 1005 190 20 20 chr3 7665533 7665733 -219858845 - MER20 DNA MER1_type -19 200 1 760 222 102 9 chr3 7666173 7666389 -219858189 + MIR SINE MIR 14 249 -13 206 310 113 0 chr3 7666738 7666809 -219857769 + MIR SINE MIR 29 107 -155 2442 77 0 3 chr3 7666944 7667254 -219857324 - AluY SINE Alu -2 309 1 242 253 24 60 chr3 7667358 7667441 -219857137 - MIR SINE MIR -81 127 48 2130 116 3 16 chr3 7668229 7668539 -219856039 + AluSx SINE Alu 4 309 -3 3547 152 48 2 chr3 7668540 7669146 -219855432 + L1MB3 LINE L1 5550 6183 0 530 241 195 0 chr3 7669201 7669375 -219855203 - MIR SINE MIR -6 256 49 545 268 87 70 chr3 7669651 7669950 -219854628 - MER5C DNA MER1_type 0 324 21 253 348 38 52 chr3 7670142 7670352 -219854226 - L2 LINE L2 -544 2770 2564 248 307 44 18 chr3 7671177 7671291 -219853287 + MER69A DNA AcHobo 1 117 -60 1798 191 68 28 chr3 7671296 7671493 -219853085 - L1MD2 LINE L1 -1 6358 6170 2253 110 3 0 chr3 7671493 7671803 -219852775 - AluSx SINE Alu -1 311 1 1798 191 68 28 chr3 7671803 7672004 -219852574 - L1MD2 LINE L1 -189 6170 5944 314 245 96 11 chr3 7672004 7672098 -219852480 + MER69A DNA AcHobo 76 177 0 2531 57 0 22 chr3 7672380 7672698 -219851880 + AluY SINE Alu 1 311 0 22 0 0 0 chr3 7673087 7673109 -219851469 + AT_rich Low_complexity Low_complexity 1 22 0 212 315 23 62 chr3 7673144 7673273 -219851305 - MIR SINE MIR -75 133 2 1881 72 103 4 chr3 7673344 7673606 -219850972 + AluSc SINE Alu 5 292 -17 285 217 0 17 chr3 7673960 7674020 -219850558 - MER91 DNA MER1_type -80 60 2 202 296 14 28 chr3 7674645 7674716 -219849862 + MIR SINE MIR 20 89 -119 232 222 123 0 chr3 7674905 7674986 -219849592 + MIR3 SINE MIR 102 192 -16 204 278 46 65 chr3 7675585 7675693 -219848885 - MIR SINE MIR -59 149 69 3562 119 12 2 chr3 7676029 7676535 -219848043 - L1PB3 LINE L1 0 6154 5644 812 84 0 19 chr3 7676575 7676682 -219847896 - FLAM_A SINE Alu -16 126 22 305 265 34 23 chr3 7678433 7678562 -219846016 - MIR SINE MIR -58 150 20 480 218 247 6 chr3 7679012 7679182 -219845396 - MIR SINE MIR -1 261 51 1904 128 16 26 chr3 7679182 7679488 -219845090 - AluSx SINE Alu -9 303 1 201 211 0 0 chr3 7679789 7679841 -219844737 + (CA)n Simple_repeat Simple_repeat 1 52 0 231 254 140 18 chr3 7680478 7680592 -219843986 - MIR3 SINE MIR -80 128 1 1824 185 0 3 chr3 7682259 7682557 -219842021 + AluJo SINE Alu 1 297 -15 582 250 152 10 chr3 7682869 7683073 -219841505 + MIR SINE MIR 16 248 -14 1991 140 13 0 chr3 7683194 7683501 -219841077 - AluSx SINE Alu -1 311 1 240 234 261 0 chr3 7683604 7683715 -219840863 - MIR3 SINE MIR -29 179 40 279 315 109 25 chr3 7683816 7684054 -219840524 - L2 LINE L2 -825 2489 2232 2320 106 0 3 chr3 7684401 7684703 -219839875 - AluSx SINE Alu -11 301 1 320 316 18 9 chr3 7685199 7685313 -219839265 + L2 LINE L2 3158 3272 0 1903 145 3 3 chr3 7685487 7685769 -219838809 - AluSx SINE Alu -30 282 1 890 45 0 0 chr3 7685843 7685953 -219838625 + L1PA4 LINE L1 6046 6155 0 355 283 145 0 chr3 7686405 7686543 -219838035 - MIR SINE MIR -65 197 40 2090 130 0 3 chr3 7687357 7687650 -219836928 + AluSg SINE Alu 3 294 -16 2222 114 23 0 chr3 7687752 7688051 -219836527 + AluJb SINE Alu 1 306 -6 826 169 0 0 chr3 7688635 7688765 -219835813 - FLAM_A SINE Alu -1 132 3 264 350 57 13 chr3 7688848 7689005 -219835573 + MIR3 SINE MIR 45 208 0 1951 223 47 10 chr3 7689163 7689670 -219834908 - L1M4 LINE L1 -1208 4938 4413 1221 181 42 0 chr3 7689688 7689903 -219834675 - MER58A DNA MER1_type 0 224 1 2168 98 28 0 chr3 7690331 7690617 -219833961 - AluSx SINE Alu -18 294 1 1697 195 7 0 chr3 7691365 7691657 -219832921 + AluJb SINE Alu 1 294 -18 216 0 0 0 chr3 7691658 7691682 -219832896 + (CA)n Simple_repeat Simple_repeat 2 25 0 680 149 79 0 chr3 7691778 7691892 -219832686 - FLAM_C SINE Alu -19 124 2 201 386 30 0 chr3 7692006 7692107 -219832471 + L2 LINE L2 3169 3272 0 257 267 150 0 chr3 7692172 7692292 -219832286 + L1ME LINE L1 5705 5842 -279 2520 87 0 0 chr3 7692354 7692663 -219831915 + AluSg SINE Alu 1 309 -1 22 0 0 0 chr3 7692824 7692846 -219831732 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr3 7693578 7693608 -219830970 + (GA)n Simple_repeat Simple_repeat 1 30 0 1636 169 6 49 chr3 7694624 7694949 -219829629 - AluJo SINE Alu -1 311 1 768 209 12 6 chr3 7694985 7695148 -219829430 - MER5A DNA MER1_type -25 164 1 322 292 93 83 chr3 7695548 7695849 -219828729 + L2 LINE L2 2960 3263 -9 183 302 52 10 chr3 7696976 7697072 -219827506 + L2 LINE L2 2563 2662 -652 2163 101 0 3 chr3 7697451 7697747 -219826831 - AluSc SINE Alu -14 295 1 1759 128 7 40 chr3 7698373 7698670 -219825908 - AluJb SINE Alu -13 299 13 845 223 36 16 chr3 7698670 7698863 -219825715 - MER58A DNA MER1_type -9 215 19 287 246 144 8 chr3 7699114 7699232 -219825346 + L2 LINE L2 3170 3303 -10 2349 98 7 0 chr3 7699502 7699809 -219824769 + AluSp SINE Alu 1 309 -4 537 188 240 19 chr3 7700069 7700223 -219824355 + MER53 DNA DNA 2 189 0 213 121 0 0 chr3 7700401 7700434 -219824144 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 267 315 63 14 chr3 7700472 7700615 -219823963 + MIR SINE MIR 12 161 -101 184 358 0 0 chr3 7700765 7700832 -219823746 + L2 LINE L2 3205 3271 -1 2272 128 0 0 chr3 7701101 7701406 -219823172 - AluSg SINE Alu -5 305 1 449 222 104 22 chr3 7704154 7704289 -219820289 - L2 LINE L2 -5 3267 3122 2119 90 54 0 chr3 7704656 7704934 -219819644 + AluSq SINE Alu 1 293 -20 24 96 0 0 chr3 7706678 7706751 -219817827 + AT_rich Low_complexity Low_complexity 1 73 0 521 275 6 25 chr3 7707486 7707646 -219816932 - MIR SINE MIR -72 190 34 322 295 25 0 chr3 7708241 7708363 -219816215 + L2 LINE L2 2199 2323 -991 872 225 69 23 chr3 7708373 7708635 -219815943 - L1MB4 LINE L1 0 6180 5907 275 250 70 20 chr3 7709800 7709900 -219814678 + MIR SINE MIR 81 185 -77 2058 140 7 0 chr3 7709909 7710209 -219814369 + AluSx SINE Alu 1 302 -10 226 246 33 0 chr3 7710742 7710803 -219813775 - MER5B DNA MER1_type 0 178 116 709 191 112 27 chr3 7710840 7711028 -219813550 + MER20 DNA MER1_type 16 219 0 1071 178 28 0 chr3 7711152 7711332 -219813246 - MER5A DNA MER1_type -2 187 3 1602 112 31 5 chr3 7712071 7712295 -219812283 + MER30 DNA MER1_type 1 230 0 566 255 28 0 chr3 7712313 7712458 -219812120 - MIR SINE MIR -87 175 27 2379 99 3 0 chr3 7712460 7712762 -219811816 - AluSq SINE Alu -10 303 1 608 248 62 6 chr3 7712882 7713043 -219811535 + Charlie8 DNA MER1_type 11 180 -2237 538 208 53 52 chr3 7713044 7713220 -219811358 + MSTC LTR MaLR 1 180 -185 274 126 24 0 chr3 7713219 7713280 -219811298 + MSTB2 LTR MaLR 308 431 -26 * 235 280 156 53 chr3 7713445 7713670 -219810908 + L2 LINE L2 2916 3163 -150 538 252 63 15 chr3 7713691 7713861 -219810717 + MIR SINE MIR 13 196 -66 2242 120 0 0 chr3 7713861 7714162 -219810416 + AluSx SINE Alu 1 301 -11 538 252 63 15 chr3 7714162 7714197 -219810381 + MIR SINE MIR 196 228 -34 278 149 21 0 chr3 7714234 7714281 -219810297 + Charlie8 DNA MER1_type 2364 2411 -6 357 62 0 0 chr3 7714677 7714725 -219809853 + (CA)n Simple_repeat Simple_repeat 1 48 0 213 39 0 0 chr3 7714724 7714750 -219809828 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 1203 222 108 7 chr3 7714760 7715057 -219809521 + MER2 DNA MER2_type 6 332 -13 25810 64 4 9 chr3 7715287 7718608 -219805970 - L1P LINE L1 -2831 3315 11 616 239 119 26 chr3 7718627 7718965 -219805613 + MLT1G LTR MaLR 153 588 -2 1791 152 20 10 chr3 7721266 7721562 -219803016 - AluJo SINE Alu -13 299 1 265 185 174 0 chr3 7721576 7721668 -219802910 - MER113 DNA MER1_type? -410 111 4 257 347 41 0 chr3 7721671 7721792 -219802786 - MIR3 SINE MIR -52 156 31 2255 91 3 3 chr3 7722299 7722586 -219801992 - AluSp SINE Alu -15 298 12 201 261 54 43 chr3 7724911 7725003 -219799575 + MIR SINE MIR 103 195 -67 1837 150 0 43 chr3 7726435 7726761 -219797817 - AluJb SINE Alu 0 312 1 1840 147 14 7 chr3 7727386 7727672 -219796906 + AluJo SINE Alu 1 288 -24 11323 113 19 10 chr3 7827864 7830647 -219693931 + L1PA7 LINE L1 54 2871 -3590 * 16093 95 33 7 chr3 7830643 7833624 -219690954 + L1PA7 LINE L1 3162 6223 -246 1093 214 173 55 chr3 7834314 7834613 -219689965 - MER77 LTR ERV1 -4 601 339 1493 201 116 14 chr3 7834613 7835035 -219689543 - MLT1C LTR MaLR 0 467 3 1093 214 173 55 chr3 7835035 7835244 -219689334 - MER77 LTR ERV1 -266 339 55 1359 193 12 105 chr3 7836198 7836597 -219687981 - MLT1A1 LTR MaLR -3 362 1 499 138 0 12 chr3 7836942 7837022 -219687556 + AluSq SINE Alu 142 220 -93 598 110 28 9 chr3 7837060 7837169 -219687409 + A-rich Low_complexity Low_complexity 4 114 0 492 314 0 0 chr3 7837177 7837298 -219687280 + L2 LINE L2 3150 3270 -2 527 146 21 0 chr3 7837340 7837436 -219687142 + L1MD3 LINE L1 7889 7986 -9 317 271 153 0 chr3 7838434 7838552 -219686026 - MIR SINE MIR -70 192 57 313 269 10 0 chr3 7838986 7839090 -219685488 + L1MD1 LINE L1 6128 6232 -10 183 290 65 0 chr3 7839146 7839208 -219685370 - MIR SINE MIR -78 184 119 586 199 61 15 chr3 7839222 7839353 -219685225 + MIR SINE MIR 12 148 -114 279 284 45 11 chr3 7839426 7839514 -219685064 - MIR SINE MIR -170 92 2 460 220 83 0 chr3 7839623 7839732 -219684846 - MLT1C LTR MaLR 0 467 350 1991 142 9 19 chr3 7839732 7840048 -219684530 + AluSq SINE Alu 1 313 0 388 296 79 4 chr3 7840201 7840649 -219683929 - L1ME4a LINE L1 -32 6089 5572 196 277 0 0 chr3 7840727 7840774 -219683804 - L2 LINE L2 0 3313 3267 590 237 194 0 chr3 7841142 7841328 -219683250 + MIR SINE MIR 11 232 -30 411 281 72 72 chr3 7842632 7842853 -219681725 + MIR SINE MIR 8 228 -34 452 232 18 89 chr3 7843035 7843185 -219681393 - MIR SINE MIR -62 146 22 1980 114 10 7 chr3 7843185 7843475 -219681103 - AluSp SINE Alu -22 291 1 452 232 18 89 chr3 7843475 7843496 -219681082 - MIR SINE MIR -186 22 1 1998 186 3 6 chr3 7844311 7844677 -219679901 - MLT1A1 LTR MaLR 0 365 1 2034 141 0 0 chr3 7844761 7845052 -219679526 - AluSx SINE Alu -19 293 3 802 232 44 6 chr3 7845058 7845239 -219679339 + MER5A DNA MER1_type 2 189 0 325 188 128 77 chr3 7845676 7845793 -219678785 + MIR3 SINE MIR 32 154 -54 2044 113 33 7 chr3 7846899 7847201 -219677377 + AluSg SINE Alu 1 310 0 266 114 0 125 chr3 7847517 7847605 -219676973 + MER113 DNA MER1_type? 59 135 -386 364 325 26 26 chr3 7847885 7848079 -219676499 + MLT1J2 LTR MaLR 247 440 -10 1546 156 9 98 chr3 7848096 7848423 -219676155 + AluJo SINE Alu 5 302 -10 294 320 68 0 chr3 7849256 7849359 -219675219 + L2 LINE L2 3197 3306 -7 542 319 29 10 chr3 7850226 7850433 -219674145 + MIR SINE MIR 7 217 -45 966 194 63 93 chr3 7850439 7850707 -219673871 + AluSg SINE Alu 5 264 -46 542 133 48 0 chr3 7851545 7851650 -219672928 + L1 LINE L1 4727 4836 -1310 181 338 0 14 chr3 7852462 7852533 -219672045 + L2 LINE L2 2847 2916 -397 196 263 0 75 chr3 7852998 7853078 -219671500 + L2 LINE L2 2922 2995 -277 1506 211 42 70 chr3 7853096 7853637 -219670941 + L1M4 LINE L1 14 539 -6003 401 258 39 39 chr3 7853796 7853978 -219670600 - L1ME3A LINE L1 -10 6160 5979 500 287 43 38 chr3 7854001 7854210 -219670368 - L1ME3A LINE L1 -291 5879 5667 1356 205 72 5 chr3 7854229 7854260 -219670318 - MLT2D LTR ERVL -7 457 430 237 33 0 0 chr3 7854260 7854290 -219670288 + (TG)n Simple_repeat Simple_repeat 2 31 0 1356 205 72 5 chr3 7854290 7854627 -219669951 - MLT2D LTR ERVL -34 430 1 1587 191 125 33 chr3 7854740 7854796 -219669782 - MER74A LTR ERVL -30 528 479 2052 125 0 7 chr3 7854796 7855092 -219669486 + AluSx SINE Alu 1 294 -18 1587 191 125 33 chr3 7855092 7855484 -219669094 - MER74A LTR ERVL -79 479 39 1685 133 85 14 chr3 7855484 7855838 -219668740 + L1PA11 LINE L1 5793 6171 -3 180 243 184 29 chr3 7856977 7857080 -219667498 - MIR SINE MIR -73 135 17 1366 230 21 7 chr3 7857196 7857483 -219667095 + AluJo SINE Alu 1 291 -21 420 257 10 20 chr3 7857504 7857605 -219666973 + L2 LINE L2 3195 3294 -19 440 235 98 20 chr3 7857616 7857697 -219666881 - MIR SINE MIR -13 249 176 1410 190 67 32 chr3 7857697 7858071 -219666507 + MLT1B LTR MaLR 4 390 0 440 235 98 20 chr3 7858071 7858142 -219666436 - MIR SINE MIR -86 176 85 1583 121 21 31 chr3 7858241 7858531 -219666047 + L1PA15-16 LINE L1 2641 2927 -3922 933 116 0 34 chr3 7858531 7858678 -219665900 + AluSq SINE Alu 107 248 -65 3489 200 48 14 chr3 7858779 7859608 -219664970 - L1P LINE L1 -5275 871 15 3352 196 2 32 chr3 7859608 7860449 -219664129 + L1P LINE L1 952 1767 -4379 463 293 131 57 chr3 7861625 7862151 -219662427 + L1M4 LINE L1 2944 3515 -2631 344 351 68 11 chr3 7862179 7862370 -219662208 + L1M4 LINE L1 3637 3838 -2308 329 235 12 0 chr3 7862443 7862524 -219662054 - MER46C DNA MER2_type -1 337 256 17227 85 17 10 chr3 7863450 7865529 -219659049 + L1P LINE L1 1586 3689 -2457 204 40 0 0 chr3 7865529 7865554 -219659024 + (TAA)n Simple_repeat Simple_repeat 3 27 0 17227 85 17 10 chr3 7865554 7866097 -219658481 + L1P LINE L1 3689 4227 -1919 698 126 19 101 chr3 7866208 7866367 -219658211 - MLT1C LTR MaLR -315 152 7 314 312 176 16 chr3 7867496 7867621 -219656957 + MIR SINE MIR 2 146 -116 2166 132 3 0 chr3 7867627 7867931 -219656647 + AluSg SINE Alu 1 305 -5 659 256 20 20 chr3 7867934 7868129 -219656449 - MLT1F1 LTR MaLR -370 197 3 2208 75 20 3 chr3 7868935 7869240 -219655338 + AluY SINE Alu 1 310 -1 231 341 71 24 chr3 7869249 7869375 -219655203 + MIR SINE MIR 83 214 -48 467 175 0 0 chr3 7869546 7869626 -219654952 + MER5A DNA MER1_type 30 109 -80 227 228 248 20 chr3 7869552 7869653 -219654925 - MER5A DNA MER1_type -24 165 42 * 266 272 26 35 chr3 7870011 7870125 -219654453 + MER5A DNA MER1_type 7 119 -70 354 294 85 47 chr3 7870685 7870896 -219653682 - MLT1K LTR MaLR -346 242 24 1006 248 17 0 chr3 7870915 7871149 -219653429 - MER8 DNA MER2_type -1 238 1 923 261 79 32 chr3 7872289 7872736 -219651842 + L1MC/D LINE L1 4861 5363 -965 1965 102 6 58 chr3 7872736 7873049 -219651529 - AluSc SINE Alu -12 297 1 923 261 79 32 chr3 7873049 7873270 -219651308 + L1MC/D LINE L1 5363 5572 -756 393 115 37 0 chr3 7873265 7873343 -219651235 + L1MD3 LINE L1 6244 7984 -11 * 205 302 137 29 chr3 7873706 7873845 -219650733 - L3 LINE CR1 -441 1136 983 3454 219 58 41 chr3 7875269 7875394 -219649184 - L1M4c LINE L1 -4666 1980 1859 2080 137 0 0 chr3 7875394 7875678 -219648900 + AluSg SINE Alu 1 284 -26 3454 219 58 41 chr3 7875678 7875877 -219648701 - L1M4c LINE L1 -4787 1859 1665 517 198 0 24 chr3 7875877 7876003 -219648575 - L1PA7 LINE L1 0 6154 6032 3454 219 58 41 chr3 7876003 7877042 -219647536 - L1M4c LINE L1 -4981 1665 644 3846 63 8 0 chr3 7877185 7877677 -219646901 + L1PA6 LINE L1 5656 6151 -3 2244 214 24 75 chr3 7877702 7878010 -219646568 + L1MA10 LINE L1 5653 5975 -359 1965 164 0 7 chr3 7878010 7878315 -219646263 + AluSx SINE Alu 2 304 -8 2244 214 24 75 chr3 7878315 7878721 -219645857 + L1MA10 LINE L1 5975 6330 -4 201 39 0 0 chr3 7879867 7879893 -219644685 + (A)n Simple_repeat Simple_repeat 1 26 0 7203 103 15 15 chr3 7880689 7880755 -219643823 + L1P LINE L1 1771 1836 -4310 2060 150 0 0 chr3 7880755 7881048 -219643530 - AluSg SINE Alu -17 293 1 7203 103 15 15 chr3 7881048 7882042 -219642536 + L1P LINE L1 1835 2831 -3315 180 360 84 56 chr3 7882490 7882776 -219641802 - L2 LINE L2 -17 3255 2962 318 236 0 38 chr3 7883333 7883439 -219641139 - MER117 DNA MER1_type -26 171 70 342 270 102 15 chr3 7883730 7883867 -219640711 + MIR SINE MIR 1 149 -113 214 298 43 0 chr3 7883936 7883983 -219640595 - L2 LINE L2 -86 3186 3138 1684 149 79 6 chr3 7885925 7886240 -219638338 + L1MB8 LINE L1 5839 6176 -2 1858 91 6 91 chr3 7886581 7886911 -219637667 + AluSc SINE Alu 1 302 -7 700 209 76 6 chr3 7886945 7887103 -219637475 + MER3 DNA MER1_type 41 209 0 550 245 66 7 chr3 7887111 7887262 -219637316 + MIR SINE MIR 67 226 -36 199 369 56 20 chr3 7887294 7887489 -219637089 + L2 LINE L2 2546 2747 -567 950 233 25 82 chr3 7887493 7887811 -219636767 + AluJb SINE Alu 1 300 -2 207 269 0 15 chr3 7888720 7888787 -219635791 + CT-rich Low_complexity Low_complexity 3 68 0 403 272 29 0 chr3 7889180 7889283 -219635295 + L2 LINE L2 3153 3258 -14 1538 112 5 0 chr3 7891434 7891640 -219632938 - AluSg/x SINE Alu -38 272 66 293 303 13 0 chr3 7891801 7891877 -219632701 + L2 LINE L2 3192 3268 -4 239 319 96 0 chr3 7891978 7892072 -219632506 - L3 LINE CR1 -393 1184 1082 231 227 252 34 chr3 7893504 7893623 -219630955 + MER5A DNA MER1_type 30 185 -4 578 223 141 0 chr3 7893639 7893799 -219630779 - MER5A DNA MER1_type 0 189 4 238 207 132 0 chr3 7894049 7894170 -219630408 + AluSg SINE Alu 2 138 -162 520 201 60 148 chr3 7896340 7896658 -219627920 + MER102a DNA MER1_type 41 330 0 310 380 0 0 chr3 7898220 7898357 -219626221 + LTR16A1 LTR ERVL 3 139 -318 3951 200 65 14 chr3 7898907 7900110 -219624468 - L1M4 LINE L1 -641 5533 4275 7128 76 2 7 chr3 7900250 7901634 -219622944 + L1PA6 LINE L1 4777 6153 -1 291 308 88 31 chr3 7902099 7902258 -219622320 - MIR SINE MIR -48 214 47 745 211 13 7 chr3 7902368 7902520 -219622058 + MER58B DNA MER1_type 185 337 -4 1978 140 3 22 chr3 7902754 7903068 -219621510 + AluSx SINE Alu 1 308 -4 313 305 85 28 chr3 7904137 7904314 -219620264 + MER5A DNA MER1_type 1 187 -2 196 265 44 44 chr3 7905056 7905124 -219619454 - L2 LINE L2 -4 3268 3201 244 303 25 42 chr3 7905729 7905848 -219618730 - MIR3 SINE MIR -3 205 89 284 340 14 0 chr3 7905858 7905999 -219618579 + MER117 DNA MER1_type 18 160 -37 346 381 0 8 chr3 7906123 7906249 -219618329 - MIR SINE MIR -133 129 5 579 96 12 0 chr3 7907227 7907310 -219617268 + MSTB1 LTR MaLR 349 432 0 230 239 0 0 chr3 7907855 7907901 -219616677 + L2 LINE L2 2706 2751 -563 576 322 57 13 chr3 7907910 7908140 -219616438 - L2 LINE L2 -352 2962 2723 6542 75 7 2 chr3 7908375 7909199 -219615379 + L1PA7 LINE L1 5327 6154 0 584 239 8 8 chr3 7909857 7909991 -219614587 + MER20 DNA MER1_type 86 219 0 267 157 20 0 chr3 7910096 7910147 -219614431 - L2 LINE L2 0 3272 3221 1122 189 33 54 chr3 7912407 7912741 -219611837 - MER44D DNA MER2_type -12 597 1 335 227 0 0 chr3 7912742 7912808 -219611770 - MER91B DNA MER1_type -89 101 36 207 350 72 0 chr3 7913261 7913358 -219611220 + L3 LINE CR1 401 504 -1073 271 317 112 0 chr3 7914248 7914409 -219610169 - L2 LINE L2 0 3313 3135 1194 161 9 19 chr3 7914531 7914742 -219609836 + L1MB3 LINE L1 5975 6183 0 247 273 45 23 chr3 7915395 7915527 -219609051 + MER4A LTR ERV1 116 250 -414 22 0 0 0 chr3 7915621 7915643 -219608935 + AT_rich Low_complexity Low_complexity 1 22 0 423 171 225 39 chr3 7915722 7915851 -219608727 + MER4C LTR ERV1 294 446 -19 594 289 138 23 chr3 7915875 7916179 -219608399 - L2 LINE L2 -47 3266 2928 183 200 40 107 chr3 7916427 7916502 -219608076 - L3 LINE CR1 -832 745 676 317 216 75 30 chr3 7916957 7917091 -219607487 + LTR16C LTR ERVL 352 491 0 4979 181 49 26 chr3 7918618 7919905 -219604673 + L1MA9 LINE L1 4848 6311 -1 201 74 0 0 chr3 7920086 7920113 -219604465 + (A)n Simple_repeat Simple_repeat 1 27 0 289 247 81 86 chr3 7921783 7921969 -219602609 + L1ME LINE L1 5634 5818 -303 382 288 18 9 chr3 7922216 7922327 -219602251 - MIR SINE MIR -90 172 61 190 348 158 19 chr3 7922367 7922525 -219602053 + MIR3 SINE MIR 16 195 -13 221 398 0 0 chr3 7923223 7923311 -219601267 - MIR SINE MIR -55 153 66 217 334 88 0 chr3 7923986 7924122 -219600456 - MIR SINE MIR -63 145 45 381 253 22 0 chr3 7924185 7924276 -219600302 - MER5A DNA MER1_type -88 101 9 457 308 14 20 chr3 7925057 7925203 -219599375 + MIR3 SINE MIR 40 184 -24 342 270 41 0 chr3 7926060 7926186 -219598392 + MLT1J2 LTR MaLR 65 233 -278 320 275 102 23 chr3 7926864 7927070 -219597508 + MIR SINE MIR 9 225 -37 260 253 48 48 chr3 7927139 7927222 -219597356 + L2 LINE L2 3231 3313 0 843 271 76 15 chr3 7927313 7927739 -219596839 - MARNA DNA Mariner -33 553 70 328 264 174 0 chr3 7928277 7928398 -219596180 - MIR SINE MIR -62 200 59 653 345 47 14 chr3 7931081 7931377 -219593201 + L2 LINE L2 2654 2959 -355 1918 139 34 28 chr3 7932072 7932424 -219592154 - MSTB1 LTR MaLR 0 432 79 364 293 91 54 chr3 7932730 7932972 -219591606 + L1ME4a LINE L1 5778 6028 -93 1525 181 0 40 chr3 7933038 7933315 -219591263 - AluJo SINE Alu -17 295 30 1202 94 0 50 chr3 7934277 7934457 -219590121 + AluSq SINE Alu 143 313 0 388 296 79 4 chr3 7934607 7935055 -219589523 - L1ME4a LINE L1 -32 6089 5572 196 277 0 0 chr3 7935133 7935180 -219589398 - L2 LINE L2 0 3313 3267 590 237 194 0 chr3 7935548 7935734 -219588844 + MIR SINE MIR 11 232 -30 485 278 17 56 chr3 7936371 7936551 -219588027 - MER5B DNA MER1_type -2 176 4 350 258 0 22 chr3 7936551 7936638 -219587940 - MER5B DNA MER1_type -93 85 1 794 187 66 28 chr3 7937288 7937470 -219587108 - MER5A DNA MER1_type 0 189 1 972 245 44 24 chr3 7938303 7938601 -219585977 + LTR40b LTR ERVL 1 304 -158 2081 123 20 0 chr3 7938614 7938914 -219585664 + AluSx SINE Alu 1 306 -6 339 159 16 0 chr3 7938917 7938980 -219585598 + LTR40b LTR ERVL 394 457 -5 261 281 148 39 chr3 7939122 7939250 -219585328 + L2 LINE L2 3171 3312 -1 872 274 109 35 chr3 7939277 7939682 -219584896 - LTR16A LTR ERVL 0 450 16 2000 186 3 6 chr3 7939748 7940114 -219584464 - MLT1A1 LTR MaLR 0 365 1 2002 139 0 0 chr3 7940198 7940479 -219584099 - AluSx SINE Alu -19 293 13 3732 155 22 24 chr3 7940619 7941342 -219583236 + L1MA10 LINE L1 5602 6323 -11 410 353 73 71 chr3 7941419 7941805 -219582773 + L2 LINE L2 2838 3227 -45 1335 226 57 28 chr3 7941805 7942229 -219582349 - MER63B DNA MER1_type 0 436 1 410 353 73 71 chr3 7942229 7942267 -219582311 + L2 LINE L2 3227 3263 -9 2180 126 10 0 chr3 7943167 7943476 -219581102 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 7943626 7943647 -219580931 + AT_rich Low_complexity Low_complexity 1 21 0 217 222 111 0 chr3 7943893 7943938 -219580640 - L2 LINE L2 -3 3269 3220 470 298 80 48 chr3 7944168 7944480 -219580098 - MLT1K LTR MaLR -126 462 141 186 344 16 0 chr3 7944587 7944651 -219579927 - L2 LINE L2 -237 3035 2971 475 280 126 6 chr3 7946909 7947084 -219577494 + L2 LINE L2 3112 3307 -6 241 347 74 34 chr3 7947110 7947286 -219577292 - MIR SINE MIR -20 242 60 455 337 63 0 chr3 7947489 7947664 -219576914 - MIR SINE MIR -41 221 36 467 360 35 19 chr3 7947742 7948003 -219576575 + L3 LINE CR1 967 1231 -346 683 298 37 16 chr3 7948098 7948343 -219576235 + MIR SINE MIR 13 262 0 190 292 188 21 chr3 7948543 7948639 -219575939 - MIR SINE MIR -67 141 30 990 316 104 23 chr3 7948826 7949549 -219575029 + L2 LINE L2 2499 3308 -5 2380 88 0 28 chr3 7950352 7950670 -219573908 + AluY SINE Alu 1 309 -2 22 56 0 0 chr3 7950935 7950971 -219573607 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr3 7950981 7951004 -219573574 + AT_rich Low_complexity Low_complexity 1 23 0 270 231 0 0 chr3 7951822 7951887 -219572691 + (TA)n Simple_repeat Simple_repeat 1 65 0 190 355 0 0 chr3 7951887 7951949 -219572629 + L2 LINE L2 2920 2981 -291 329 223 117 21 chr3 7951996 7952090 -219572488 + MER5A DNA MER1_type 31 133 -56 258 213 0 0 chr3 7952443 7952490 -219572088 + L2 LINE L2 3257 3303 -10 2177 146 8 11 chr3 7952594 7952956 -219571622 + MLT1A1 LTR MaLR 5 365 0 398 286 0 0 chr3 7953020 7953118 -219571460 + L2 LINE L2 3173 3270 -2 323 283 43 11 chr3 7953664 7953756 -219570822 + MIR SINE MIR 118 212 -50 24 0 0 0 chr3 7955291 7955315 -219569263 + AT_rich Low_complexity Low_complexity 1 24 0 266 244 26 0 chr3 7955445 7955523 -219569055 + (TATATG)n Simple_repeat Simple_repeat 3 82 0 777 211 93 45 chr3 7956026 7956272 -219568306 + MIR SINE MIR 5 262 0 823 195 23 45 chr3 7957662 7957883 -219566695 + MER20 DNA MER1_type 2 217 -2 249 258 305 0 chr3 7958696 7958824 -219565754 - MIR SINE MIR -45 217 51 2582 238 30 20 chr3 7959020 7959664 -219564914 + MER82 DNA MER2_type 1 650 -3 687 178 103 23 chr3 7960067 7960241 -219564337 + MER5A DNA MER1_type 2 189 0 3882 168 14 3 chr3 7960773 7961469 -219563109 + MER50 LTR ERV1 7 710 -24 210 294 147 29 chr3 7961477 7961579 -219562999 - L2 LINE L2 -40 3273 3160 283 319 120 15 chr3 7962961 7963209 -219561369 - L3 LINE CR1 -15 1562 1238 2059 131 0 7 chr3 7963569 7963866 -219560712 - AluSx SINE Alu -17 295 1 991 204 125 14 chr3 7964222 7964501 -219560077 - LTR2 LTR ERV1 0 449 140 244 298 145 8 chr3 7964532 7964663 -219559915 - LTR2 LTR ERV1 -298 151 3 387 309 19 47 chr3 7964702 7964958 -219559620 - L2 LINE L2 -1037 2277 2029 280 258 34 34 chr3 7965049 7965138 -219559440 - L2 LINE L2 -1359 1955 1867 304 330 73 31 chr3 7965615 7965653 -219558925 + MIR SINE MIR 48 83 -179 2178 154 43 25 chr3 7965653 7966095 -219558483 - LTR7 LTR ERV1 0 450 1 304 330 73 31 chr3 7966095 7966247 -219558331 + MIR SINE MIR 83 246 -16 4952 214 18 33 chr3 7966971 7968998 -219555580 + L1PA8A LINE L1 3 2163 -4298 940 117 0 6 chr3 7969003 7969166 -219555412 + L1PA8A LINE L1 3634 3795 -2666 12574 110 5 7 chr3 7969213 7970012 -219554566 + L1PA8A LINE L1 3756 4555 -1891 2034 143 26 10 chr3 7970012 7970319 -219554259 + AluSx SINE Alu 1 312 0 12574 110 5 7 chr3 7970319 7972200 -219552378 + L1PA8A LINE L1 4555 6445 -1 1415 183 54 0 chr3 7972214 7972509 -219552069 + L1M2 LINE L1 5476 5786 -526 8343 54 7 0 chr3 7972694 7974526 -219550052 - L1PA5 LINE L1 -3 6151 4304 5958 90 2 15 chr3 7974791 7975677 -219548901 + L1PA10 LINE L1 5291 6165 -3 1494 174 14 88 chr3 7975761 7976185 -219548393 + MLT2D LTR ERVL 5 377 -20 256 259 0 0 chr3 7976192 7976250 -219548328 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 258 100 50 0 chr3 7976254 7976294 -219548284 + MLT2D LTR ERVL 367 408 -6 649 278 40 48 chr3 7976299 7976547 -219548031 - MIR SINE MIR -10 252 7 290 146 0 18 chr3 7977123 7977178 -219547400 - L1ME LINE L1 -476 5645 5592 381 238 42 35 chr3 7977295 7977554 -219547024 + MLT1I LTR MaLR 95 399 -10 956 287 89 0 chr3 7977789 7978204 -219546374 - L1MC4a LINE L1 -1862 5946 5495 508 272 101 68 chr3 7978221 7978698 -219545880 - L1MC4a LINE L1 -1684 4462 3947 8036 214 17 7 chr3 7979079 7981031 -219543547 - L1P LINE L1 -1361 4785 2814 7444 32 16 1 chr3 7981042 7984421 -219540157 - L1PA4 LINE L1 -6 6149 2719 2536 37 0 0 chr3 7984419 7984741 -219539837 - L1P LINE L1 -1001 5145 4824 * 7811 102 29 6 chr3 7984745 7986728 -219537850 - L1PA7 LINE L1 -3 6466 4451 10397 98 7 0 chr3 7986731 7988226 -219536352 - L1PA7 LINE L1 -4812 1649 145 3342 203 20 12 chr3 7988224 7988972 -219535606 - L1PA13 LINE L1 -4803 1984 1231 * 227 321 9 0 chr3 7989010 7989119 -219535459 - L1PA12 LINE L1 -5279 2302 2193 227 335 29 61 chr3 7989965 7990210 -219534368 - L1PA12 LINE L1 -7202 379 143 724 286 152 47 chr3 7990241 7990927 -219533651 - L1M4 LINE L1 -3113 3033 2276 2329 104 3 0 chr3 7990928 7991226 -219533352 - AluSx SINE Alu -13 299 1 214 264 28 14 chr3 7991371 7991443 -219533135 + (CTA)n Simple_repeat Simple_repeat 2 74 0 341 366 42 0 chr3 7992935 7993077 -219531501 + MIR SINE MIR 86 233 -29 512 260 0 0 chr3 7993092 7993215 -219531363 + Tigger3(Golem) DNA MER2_type 3 125 -2904 288 103 39 39 chr3 7993212 7993290 -219531288 + Tigger3(Golem) DNA MER2_type 2483 2560 -469 * 711 176 11 102 chr3 7993297 7993484 -219531094 + FRAM SINE Alu 2 171 -5 2784 131 7 13 chr3 7993484 7993935 -219530643 + Tigger3(Golem) DNA MER2_type 2581 3028 -1 27 49 0 0 chr3 7994055 7994096 -219530482 + AT_rich Low_complexity Low_complexity 1 41 0 540 45 0 0 chr3 7994840 7994907 -219529671 + (TA)n Simple_repeat Simple_repeat 2 68 0 696 184 0 17 chr3 7994955 7995180 -219529398 - AluJb SINE Alu -1 311 1 2089 147 81 18 chr3 7995333 7995728 -219528850 - MSTA LTR MaLR -4 424 5 231 294 172 12 chr3 7995841 7996004 -219528574 - MIR SINE MIR -11 251 63 2192 126 3 0 chr3 7996087 7996388 -219528190 + AluSx SINE Alu 1 302 -10 21 36 0 0 chr3 7996648 7996676 -219527902 + AT_rich Low_complexity Low_complexity 1 28 0 568 148 56 0 chr3 7996812 7996920 -219527658 - L1MA9 LINE L1 -4 6308 6195 2050 178 76 4 chr3 7996922 7997394 -219527184 - L1MA8 LINE L1 -5 6286 5781 348 262 0 0 chr3 7997394 7997497 -219527081 + (TA)n Simple_repeat Simple_repeat 2 104 0 226 211 0 0 chr3 7997498 7997550 -219527028 - L1MC4 LINE L1 -1339 6703 6652 286 342 0 0 chr3 7997550 7997629 -219526949 + (CATA)n Simple_repeat Simple_repeat 2 80 0 359 315 0 11 chr3 7997634 7997815 -219526763 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 591 293 0 0 chr3 7997831 7998159 -219526419 + (TA)n Simple_repeat Simple_repeat 1 328 0 183 366 0 0 chr3 7998185 7998360 -219526218 + (CATATA)n Simple_repeat Simple_repeat 2 176 0 * 279 161 0 0 chr3 7998333 7998389 -219526189 + (CA)n Simple_repeat Simple_repeat 2 57 0 556 159 90 141 chr3 7998391 7998647 -219525931 - L1MA8 LINE L1 -513 5778 5543 10191 225 59 66 chr3 7998789 8003127 -219521451 - L1M2 LINE L1 -602 6710 2343 2343 164 50 7 chr3 8003127 8003565 -219521013 - MSTB2 LTR MaLR 0 457 1 960 203 31 22 chr3 8003565 8003792 -219520786 - MER46A DNA MER2_type -7 229 1 10191 225 59 66 chr3 8003792 8005100 -219519478 - L1M2 LINE L1 -4967 2345 1193 266 269 92 43 chr3 8005648 8005789 -219518789 - L2 LINE L2 -1 3312 3165 257 233 79 55 chr3 8006239 8006441 -219518137 - LTR33 LTR ERVL -16 505 299 292 303 42 7 chr3 8006552 8006694 -219517884 - LTR33 LTR ERVL -366 155 9 593 129 0 0 chr3 8006869 8006954 -219517624 - FLAM SINE Alu -19 124 40 259 225 0 38 chr3 8007060 8007140 -219517438 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 801 258 45 1 chr3 8009477 8009684 -219514894 - MIR SINE MIR -47 215 3 848 181 117 0 chr3 8010160 8010348 -219514230 - MER20 DNA MER1_type -2 217 8 264 200 0 0 chr3 8010671 8010756 -219513822 + CT-rich Low_complexity Low_complexity 1 85 0 3902 118 3 0 chr3 8011504 8012091 -219512487 + L1PA13 LINE L1 5562 6150 -13 1320 170 64 70 chr3 8012237 8012596 -219511982 + MLT1A1 LTR MaLR 1 357 -8 484 321 51 10 chr3 8012613 8012906 -219511672 + MLT1K LTR MaLR 262 566 -22 493 262 41 21 chr3 8013040 8013185 -219511393 + MIR SINE MIR 41 188 -74 340 293 118 7 chr3 8013366 8013537 -219511041 - MIR SINE MIR -62 146 1 187 246 35 35 chr3 8015502 8015559 -219509019 + MIR SINE MIR 96 152 -56 364 291 87 76 chr3 8015848 8016205 -219508373 - MLT1K LTR MaLR -87 501 141 192 40 0 0 chr3 8017435 8017460 -219507118 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 775 155 9 0 chr3 8017461 8017577 -219507001 - AluJb SINE Alu -193 119 3 782 226 59 44 chr3 8017691 8017895 -219506683 + MER63A DNA MER1_type 4 210 0 896 233 77 85 chr3 8018065 8018627 -219505951 - L1ME3A LINE L1 -5 6165 5609 297 244 111 84 chr3 8019226 8019451 -219505127 - L2 LINE L2 -218 3054 2824 934 187 16 5 chr3 8019929 8020116 -219504462 - MER5A DNA MER1_type 0 189 1 838 255 25 103 chr3 8020383 8020779 -219503799 + MLT1A1 LTR MaLR 1 365 0 565 231 28 66 chr3 8021314 8021354 -219503224 + MER5B DNA MER1_type 1 41 -137 2205 133 0 0 chr3 8021354 8021663 -219502915 + AluSg SINE Alu 1 309 -1 565 231 28 66 chr3 8021663 8021804 -219502774 + MER5B DNA MER1_type 41 175 -3 984 180 16 0 chr3 8021813 8021996 -219502582 + MER5A DNA MER1_type 1 186 -3 374 357 16 11 chr3 8022010 8022195 -219502383 - MER5A DNA MER1_type -3 186 1 257 338 101 36 chr3 8022231 8022370 -219502208 - MER5B DNA MER1_type -16 162 15 477 273 45 45 chr3 8023026 8023180 -219501398 - MIR3 SINE MIR -39 169 16 2113 236 50 12 chr3 8024117 8024635 -219499943 + MLT1F LTR MaLR 5 542 0 327 289 0 0 chr3 8024645 8024735 -219499843 + L2 LINE L2 3224 3313 0 740 267 61 17 chr3 8025026 8025468 -219499110 - LTR33 LTR ERVL -25 496 3 414 138 0 0 chr3 8025750 8025815 -219498763 + AluSc SINE Alu 236 300 -9 1293 165 117 26 chr3 8025819 8026128 -219498450 - THE1C LTR MaLR -38 337 1 538 320 46 25 chr3 8026287 8026484 -219498094 - L3 LINE CR1 -8 1569 1369 968 226 22 2 chr3 8026508 8026781 -219497797 - L1ME1 LINE L1 -177 5989 5712 271 246 67 15 chr3 8027220 8027354 -219497224 - L1MEd LINE L1 -5973 146 6 181 284 40 27 chr3 8028617 8028691 -219495887 - MIR3 SINE MIR -47 161 87 222 255 0 0 chr3 8028835 8028886 -219495692 - MIR SINE MIR -108 154 104 495 264 9 88 chr3 8028991 8029207 -219495371 - MIR SINE MIR -44 218 20 2432 198 49 12 chr3 8029220 8029811 -219494767 - MER90 LTR ERV1 -1 613 1 249 311 106 12 chr3 8029836 8029997 -219494581 - L2 LINE L2 -618 2696 2521 379 283 122 24 chr3 8031846 8032051 -219492527 - LTR16A LTR ERVL -6 444 220 848 237 45 0 chr3 8032507 8032705 -219491873 - MIR SINE MIR -40 222 16 685 278 34 1 chr3 8032733 8032961 -219491617 - MIR SINE MIR -13 249 16 854 136 220 5 chr3 8034462 8034653 -219489925 + MER46A DNA MER2_type 1 232 -4 1911 178 3 45 chr3 8034669 8034808 -219489770 + MLT1A1 LTR MaLR 3 146 -219 2149 26 56 4 chr3 8034808 8035112 -219489466 - AluY SINE Alu 0 318 1 1911 178 3 45 chr3 8035112 8035348 -219489230 + MLT1A1 LTR MaLR 146 363 -2 1826 177 20 3 chr3 8035830 8036135 -219488443 - AluSx SINE Alu -2 310 1 346 157 14 0 chr3 8036357 8036427 -219488151 + MLT2B3 LTR ERVL 1 71 -483 1587 189 129 55 chr3 8036520 8036971 -219487607 + MLT2B3 LTR ERVL 71 554 0 521 296 119 51 chr3 8037228 8037776 -219486802 - MLT1K LTR MaLR 0 588 4 720 284 92 42 chr3 8037990 8038447 -219486131 + LTR33 LTR ERVL 34 513 -8 246 295 52 75 chr3 8039273 8039446 -219485132 + MIR SINE MIR 14 182 -80 1162 204 8 17 chr3 8039561 8039796 -219484782 + MER8 DNA MER2_type 7 239 0 341 202 18 53 chr3 8040199 8040313 -219484265 - MER103 DNA DNA -49 117 8 484 243 110 12 chr3 8040679 8040852 -219483726 - MIR SINE MIR -1 261 72 993 258 57 6 chr3 8040864 8041178 -219483400 + MER58B DNA MER1_type 12 341 0 204 322 56 94 chr3 8042290 8042632 -219481946 - L2 LINE L2 -4 3268 2940 189 258 30 45 chr3 8042938 8043004 -219481574 + MIR SINE MIR 87 151 -57 10906 41 7 0 chr3 8043005 8045109 -219479469 + L1PA5 LINE L1 4027 6147 -7 512 208 16 0 chr3 8045111 8045236 -219479342 + (TATG)n Simple_repeat Simple_repeat 2 128 0 206 245 19 0 chr3 8045352 8045405 -219479173 + L2 LINE L2 3217 3270 -2 539 262 104 0 chr3 8046543 8046707 -219477871 + MIR SINE MIR 44 224 -38 616 241 6 6 chr3 8047899 8048057 -219476521 + MER20 DNA MER1_type 33 190 -29 40651 51 4 3 chr3 8048109 8054255 -219470323 - L1PA5 LINE L1 0 6154 7 756 98 91 0 chr3 8054255 8054387 -219470191 - L1P5 LINE L1 -543 5608 5465 873 133 0 67 chr3 8054387 8054567 -219470011 - MLT1B LTR MaLR -222 168 1 187 342 45 0 chr3 8054821 8054932 -219469646 + MIR SINE MIR 92 207 -55 2321 112 3 0 chr3 8055519 8055824 -219468754 + AluSq SINE Alu 1 306 -7 383 244 133 22 chr3 8056781 8056865 -219467713 - MIR SINE MIR -15 247 149 513 274 71 18 chr3 8056865 8057033 -219467545 - MER5B DNA MER1_type -1 177 1 15142 215 24 6 chr3 8058016 8063369 -219461209 + L1PA15 LINE L1 1357 6816 0 338 159 23 102 chr3 8063715 8063803 -219460775 - MIR3 SINE MIR -14 194 114 301 294 12 0 chr3 8064338 8064423 -219460155 + MIR SINE MIR 68 153 -109 527 374 29 3 chr3 8064772 8065112 -219459466 + L1MEc LINE L1 35 383 -6013 638 259 77 66 chr3 8065144 8065843 -219458735 + L1MEc LINE L1 942 1648 -4748 * 2659 247 84 15 chr3 8065833 8066341 -219458237 + L1MEc LINE L1 2244 2716 -3499 2470 99 42 11 chr3 8066341 8066694 -219457884 - THE1B LTR MaLR 0 364 1 2659 247 84 15 chr3 8066694 8067425 -219457153 + L1MEc LINE L1 2716 3568 -2647 590 125 38 109 chr3 8067435 8067570 -219457008 + L1MD3 LINE L1 7729 7849 -146 2421 97 0 0 chr3 8067570 8067878 -219456700 - AluY SINE Alu -3 308 1 590 125 38 109 chr3 8067878 8067926 -219456652 + L1MD3 LINE L1 7849 7899 -96 754 278 28 5 chr3 8067926 8068138 -219456440 + MER20 DNA MER1_type 1 217 -2 321 125 16 0 chr3 8068175 8068239 -219456339 + L1MD3 LINE L1 7931 7995 0 * 423 268 63 0 chr3 8068233 8068375 -219456203 + L1MEc LINE L1 3563 3713 -2502 241 65 87 0 chr3 8069424 8069470 -219455108 + CT-rich Low_complexity Low_complexity 1 50 0 1619 192 4 0 chr3 8069470 8069746 -219454832 - AluJb SINE Alu -1 311 35 665 247 26 115 chr3 8070696 8071044 -219453534 + MLT1A1 LTR MaLR 5 321 -44 481 236 214 25 chr3 8071103 8071379 -219453199 + MER41B LTR ERV1 100 297 -189 477 254 70 22 chr3 8071465 8071650 -219452928 + MER66A LTR ERV1 285 478 0 376 235 15 30 chr3 8072540 8072672 -219451906 + LTR16A1 LTR ERVL 307 436 -21 1867 146 21 0 chr3 8072821 8073109 -219451469 - AluSq SINE Alu -19 294 1 484 335 60 9 chr3 8073827 8074060 -219450518 - MIR SINE MIR -6 256 12 377 302 71 10 chr3 8074768 8075076 -219449502 + L1ME4a LINE L1 5594 5920 -201 309 261 15 97 chr3 8075093 8075178 -219449400 + L1ME4a LINE L1 5977 6049 -72 1670 149 40 7 chr3 8075178 8075453 -219449125 + AluJb SINE Alu 1 284 -28 309 261 15 97 chr3 8075453 8075501 -219449077 + L1ME4a LINE L1 6049 6099 -22 24 0 0 0 chr3 8075553 8075577 -219449001 + AT_rich Low_complexity Low_complexity 1 24 0 807 201 113 15 chr3 8075613 8075817 -219448761 + MER58A DNA MER1_type 1 224 0 299 237 52 0 chr3 8076139 8076236 -219448342 - HAL1b LINE L1 -502 846 745 573 266 75 90 chr3 8076247 8076623 -219447955 - HAL1b LINE L1 -912 436 67 2363 151 60 2 chr3 8077429 8077832 -219446746 + MSTB LTR MaLR 1 426 0 356 182 55 18 chr3 8078267 8078377 -219446201 - L1MC3 LINE L1 0 7785 7672 1694 218 8 3 chr3 8078385 8078739 -219445839 - MLT1A1 LTR MaLR 0 365 10 2765 217 41 18 chr3 8078748 8079820 -219444758 - L1MC3 LINE L1 -486 7299 6180 1473 183 87 67 chr3 8079827 8080274 -219444304 - MER31B LTR ERV1 -10 456 1 3588 186 25 30 chr3 8080274 8080487 -219444091 - L1MC3 LINE L1 -1611 6174 5962 2149 125 0 3 chr3 8080487 8080782 -219443796 - AluSc SINE Alu -10 299 6 3588 186 25 30 chr3 8080782 8081445 -219443133 - L1MC3 LINE L1 -1823 5962 5302 1197 244 178 11 chr3 8081442 8082070 -219442508 - L1MC3 LINE L1 -1306 4840 4108 * 1753 178 24 3 chr3 8082095 8082427 -219442151 + MLT1A1 LTR MaLR 1 341 -24 1172 214 67 17 chr3 8082442 8082798 -219441780 - L1MC3 LINE L1 -2065 4081 3708 4652 148 35 23 chr3 8082809 8083904 -219440674 - L1MA8 LINE L1 -73 6218 5111 3454 249 51 9 chr3 8083959 8085317 -219439261 - L1MC3 LINE L1 -2466 3680 2266 21 36 0 0 chr3 8085360 8085388 -219439190 + AT_rich Low_complexity Low_complexity 1 28 0 920 287 73 37 chr3 8085573 8085966 -219438612 - L1MC4a LINE L1 -1896 5912 5488 1719 197 7 0 chr3 8085966 8086266 -219438312 + AluJo SINE Alu 1 302 -10 920 287 73 37 chr3 8086266 8086472 -219438106 - L1MC4a LINE L1 -2320 5488 5291 527 327 78 27 chr3 8086496 8086943 -219437635 - L1MC4a LINE L1 -892 5254 4785 28 86 0 0 chr3 8086952 8087022 -219437556 + AT_rich Low_complexity Low_complexity 1 70 0 22 35 0 0 chr3 8089922 8089951 -219434627 + AT_rich Low_complexity Low_complexity 1 29 0 185 263 0 0 chr3 8090228 8090266 -219434312 + MIR SINE MIR 113 150 -58 3059 206 73 16 chr3 8090781 8092418 -219432160 - L1PBa LINE L1 -4875 1988 115 199 350 52 0 chr3 8092462 8092559 -219432019 - MIR3 SINE MIR -9 199 98 370 275 17 40 chr3 8093220 8093396 -219431182 + MIR SINE MIR 50 220 -42 189 147 0 0 chr3 8093642 8093676 -219430902 + (TC)n Simple_repeat Simple_repeat 1 34 0 1699 211 108 0 chr3 8093959 8094357 -219430221 + MER31B LTR ERV1 4 444 -22 1190 192 20 119 chr3 8094375 8094770 -219429808 - MLT1A1 LTR MaLR -2 363 8 2369 192 58 13 chr3 8095987 8096518 -219428060 - MER89 LTR ERV1 0 559 5 750 210 18 32 chr3 8096526 8096745 -219427833 - L1ME1 LINE L1 -19 6147 5932 233 259 56 9 chr3 8096800 8096908 -219427670 - L1MCc LINE L1 -5485 938 826 696 222 70 59 chr3 8097015 8097285 -219427293 - ORSL DNA AcHobo 0 275 3 436 277 18 45 chr3 8097452 8097684 -219426894 - L1MCc LINE L1 -5708 714 258 3286 92 2 38 chr3 8097901 8098371 -219426207 + MLT2A2 LTR ERVL 1 453 0 29 0 0 0 chr3 8099361 8099390 -219425188 + AT_rich Low_complexity Low_complexity 1 29 0 204 167 19 74 chr3 8099443 8099497 -219425081 + L2 LINE L2 3263 3313 0 1015 267 100 10 chr3 8099795 8100185 -219424393 - MER110 LTR ERV1 -22 469 45 231 146 21 0 chr3 8100342 8100390 -219424188 + (CAT)n Simple_repeat Simple_repeat 3 51 0 2061 194 5 3 chr3 8100419 8100811 -219423767 - LTR39 LTR ERV1 0 783 391 1433 185 34 84 chr3 8100924 8101078 -219423500 - LTR39 LTR ERV1 -388 395 235 6166 100 11 5 chr3 8101078 8102243 -219422335 + L1PA10 LINE L1 4982 6152 -16 1433 185 34 84 chr3 8102243 8102504 -219422074 - LTR39 LTR ERV1 -548 235 1 412 275 25 17 chr3 8102508 8102628 -219421950 + MIR SINE MIR 33 153 -55 229 345 78 5 chr3 8102993 8103132 -219421446 + MIR SINE MIR 1 154 -65 360 303 8 41 chr3 8103202 8103324 -219421254 - L2 LINE L2 -7 3306 3189 4655 95 23 0 chr3 8103441 8104093 -219420485 + PABL_B LTR ERV1 1 667 0 338 279 162 0 chr3 8104102 8104238 -219420340 - MIR SINE MIR -16 246 89 21 36 0 0 chr3 8105360 8105388 -219419190 + AT_rich Low_complexity Low_complexity 1 28 0 348 313 71 28 chr3 8105406 8105758 -219418820 + HAL1 LINE L1 1168 1534 -973 25 51 0 0 chr3 8105891 8105930 -219418648 + AT_rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr3 8106027 8106047 -219418531 + (T)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr3 8106047 8106070 -219418508 + (TG)n Simple_repeat Simple_repeat 2 24 0 180 0 0 0 chr3 8106936 8106956 -219417622 + (T)n Simple_repeat Simple_repeat 1 20 0 207 0 0 0 chr3 8106956 8106979 -219417599 + (TG)n Simple_repeat Simple_repeat 2 24 0 2757 181 42 42 chr3 8107402 8107996 -219416582 + L1MB8 LINE L1 5514 6110 -68 1748 154 68 0 chr3 8107996 8108276 -219416302 - AluSg SINE Alu -11 299 1 2757 181 42 42 chr3 8108276 8108340 -219416238 + L1MB8 LINE L1 6109 6172 -6 25 0 0 0 chr3 8108403 8108428 -219416150 + AT_rich Low_complexity Low_complexity 1 25 0 239 316 0 0 chr3 8108855 8108934 -219415644 + T-rich Low_complexity Low_complexity 1 79 0 1742 219 38 22 chr3 8109515 8109966 -219414612 - MER31A LTR ERV1 -27 458 1 191 262 0 24 chr3 8110284 8110326 -219414252 - L2 LINE L2 -92 3180 3140 288 289 48 64 chr3 8110399 8110586 -219413992 + L2 LINE L2 2650 2833 -481 25 0 0 0 chr3 8112308 8112333 -219412245 + AT_rich Low_complexity Low_complexity 1 25 0 187 273 55 18 chr3 8113599 8113654 -219410924 - MIR SINE MIR -186 76 20 537 207 59 0 chr3 8114016 8114153 -219410425 + MIR SINE MIR 98 242 -20 217 152 22 43 chr3 8114124 8114170 -219410408 + L2 LINE L2 3218 3262 -10 * 354 299 64 141 chr3 8114795 8115142 -219409436 - L2 LINE L2 -12 3260 2959 3260 157 50 10 chr3 8115142 8115722 -219408856 - LTR26 LTR ERV1 0 603 1 354 299 64 141 chr3 8115722 8115856 -219408722 - L2 LINE L2 -313 2959 2816 225 0 0 0 chr3 8116104 8116129 -219408449 + (TA)n Simple_repeat Simple_repeat 2 26 0 1281 199 45 6 chr3 8116364 8116788 -219407790 - MLT1D LTR MaLR 0 505 1 3824 69 54 163 chr3 8116870 8117642 -219406936 - LTR12 LTR ERV1 0 688 1 289 274 228 25 chr3 8117710 8117907 -219406671 + L2 LINE L2 2841 3077 -195 205 125 0 0 chr3 8117961 8117993 -219406585 - L2 LINE L2 0 3313 3282 523 287 140 37 chr3 8117993 8118394 -219406184 - LTR16A LTR ERVL 0 450 9 814 291 88 39 chr3 8118405 8118957 -219405621 - L2 LINE L2 -28 3285 2699 180 0 0 0 chr3 8119307 8119327 -219405251 + (CTTTG)n Simple_repeat Simple_repeat 3 22 0 216 307 45 23 chr3 8119573 8119661 -219404917 - L2 LINE L2 -33 3239 3150 761 177 35 0 chr3 8119665 8119806 -219404772 + MER5A DNA MER1_type 3 148 -41 2120 173 19 35 chr3 8120068 8120313 -219404265 - MSTB LTR MaLR 0 426 189 1830 92 3 76 chr3 8120313 8120629 -219403949 - L1PA10 LINE L1 -9 6159 5867 2120 173 19 35 chr3 8120629 8120812 -219403766 - MSTB LTR MaLR -237 189 5 4256 250 95 32 chr3 8122117 8122576 -219402002 + L1MB7 LINE L1 5 434 -6525 1870 191 89 0 chr3 8122576 8122969 -219401609 - MSTA LTR MaLR 0 428 1 4256 250 95 32 chr3 8122969 8124470 -219400108 + L1MB7 LINE L1 434 2107 -4852 1570 205 80 27 chr3 8124470 8124846 -219399732 - MSTD LTR MaLR 0 396 1 4256 250 95 32 chr3 8124846 8125233 -219399345 + L1MB7 LINE L1 2107 2468 -4491 444 243 84 61 chr3 8125352 8125686 -219398892 + L1MB7 LINE L1 2476 2820 -4318 6093 88 34 0 chr3 8125686 8126666 -219397912 + L1PA13 LINE L1 5152 6161 -2 444 243 84 61 chr3 8126666 8126677 -219397901 + L1MB7 LINE L1 2820 2829 -4309 2940 204 31 0 chr3 8126702 8127339 -219397239 + L1MB7 LINE L1 6328 6984 -11 344 320 0 33 chr3 8127443 8127596 -219396982 - MIR SINE MIR -95 167 20 608 288 149 10 chr3 8127700 8128117 -219396461 - L1ME4a LINE L1 -99 6022 5548 207 333 0 0 chr3 8128163 8128214 -219396364 + MIR SINE MIR 36 86 -176 273 111 89 0 chr3 8128216 8128261 -219396317 - MLT2D LTR ERVL 0 414 366 1141 219 84 43 chr3 8128346 8128693 -219395885 - MLT2D LTR ERVL -53 361 1 382 228 150 16 chr3 8128715 8128842 -219395736 + MIR SINE MIR 111 254 -8 32 86 0 0 chr3 8129024 8129105 -219395473 + AT_rich Low_complexity Low_complexity 1 81 0 1414 216 20 26 chr3 8129179 8129530 -219395048 + MLT1A1 LTR MaLR 1 349 -16 182 351 60 45 chr3 8129869 8130003 -219394575 - L2 LINE L2 -183 3089 2954 237 178 0 0 chr3 8131282 8131327 -219393251 - MER5A DNA MER1_type -137 52 8 28 29 0 0 chr3 8131504 8131539 -219393039 + AT_rich Low_complexity Low_complexity 1 35 0 226 244 0 49 chr3 8131631 8131713 -219392865 - HAL1b LINE L1 -519 829 752 2640 113 3 0 chr3 8132124 8132487 -219392091 - THE1B LTR MaLR 0 364 1 187 54 54 27 chr3 8132594 8132631 -219391947 + (TATG)n Simple_repeat Simple_repeat 2 39 0 363 336 52 8 chr3 8133036 8133170 -219391408 - MIR3 SINE MIR -63 145 6 2482 140 36 10 chr3 8133292 8133707 -219390871 - MSTA LTR MaLR 0 428 3 1827 169 13 3 chr3 8133849 8134151 -219390427 - AluJb SINE Alu -7 305 1 200 288 14 27 chr3 8134185 8134258 -219390320 + L2 LINE L2 2323 2394 -920 698 324 106 23 chr3 8134283 8134908 -219389670 + L2 LINE L2 2565 3243 -70 2340 168 24 0 chr3 8134909 8135327 -219389251 + MSTA LTR MaLR 1 428 0 1791 140 66 41 chr3 8137459 8137823 -219386755 + THE1C LTR MaLR 1 373 -2 22 0 0 0 chr3 8138193 8138215 -219386363 + AT_rich Low_complexity Low_complexity 1 22 0 569 276 75 10 chr3 8138509 8138916 -219385662 - L1 LINE L1 -2597 3549 3112 1369 176 82 34 chr3 8139091 8139536 -219385042 - LTR10A LTR ERV1 -79 530 1 189 303 13 26 chr3 8139676 8139752 -219384826 + MIR SINE MIR 188 262 0 4786 136 2 67 chr3 8140227 8141058 -219383520 - THE1C-int LTR MaLR -726 854 86 5644 75 13 1 chr3 8141058 8141815 -219382763 - MER4E LTR ERV1 0 766 1 4786 136 2 67 chr3 8141815 8141894 -219382684 - THE1C-int LTR MaLR -1494 86 3 1852 152 76 22 chr3 8141896 8142252 -219382326 - THE1C LTR MaLR 0 375 1 395 247 7 41 chr3 8142264 8142410 -219382168 + MER104 DNA Tc2 39 179 -1 297 309 166 7 chr3 8142571 8142710 -219381868 + MER91A DNA MER1_type 1 161 -35 432 337 96 33 chr3 8142969 8143458 -219381120 + MLT1K LTR MaLR 16 535 -53 264 314 0 10 chr3 8143582 8143684 -219380894 + CT-rich Low_complexity Low_complexity 2 102 0 208 280 178 37 chr3 8144092 8144199 -219380379 + L2 LINE L2 3192 3313 0 2534 140 24 2 chr3 8144544 8144957 -219379621 + MSTB LTR MaLR 3 424 -2 8137 185 44 9 chr3 8144959 8146554 -219378024 + MSTB-int LTR MaLR 1 1651 0 1971 170 78 18 chr3 8146556 8146956 -219377622 + MSTB LTR MaLR 3 426 0 3076 90 28 0 chr3 8147002 8147435 -219377143 - L1PA11 LINE L1 0 6174 5730 259 266 67 8 chr3 8149094 8149192 -219375386 + MIR SINE MIR 74 175 -68 1995 154 0 0 chr3 8149693 8149985 -219374593 + AluSx SINE Alu 1 292 -20 3434 48 0 0 chr3 8150319 8150734 -219373844 + L1PA7 LINE L1 5733 6147 -7 2099 119 30 0 chr3 8152530 8152833 -219371745 + AluSx SINE Alu 1 312 0 501 288 85 29 chr3 8153067 8153572 -219371006 + L1MC4a LINE L1 3877 4421 -1725 477 317 61 66 chr3 8153793 8153950 -219370628 + L1MC4a LINE L1 4733 4889 -1257 2270 99 3 0 chr3 8153950 8154244 -219370334 - AluSp SINE Alu -18 295 1 477 317 61 66 chr3 8154244 8154480 -219370098 + L1MC4a LINE L1 4889 5124 -1022 1067 273 90 56 chr3 8154627 8155286 -219369292 + L1MC4a LINE L1 5265 5819 -302 210 315 72 9 chr3 8156229 8156340 -219368238 - MIR SINE MIR 0 262 145 324 0 0 0 chr3 8156743 8156779 -219367799 + (A)n Simple_repeat Simple_repeat 1 36 0 3588 120 0 0 chr3 8156970 8157502 -219367076 + L1PA8 LINE L1 5635 6166 -6 2988 224 48 8 chr3 8157916 8158280 -219366298 + MER21B LTR ERV1 4 352 -511 2418 168 26 5 chr3 8158280 8158697 -219365881 - MSTB LTR MaLR 0 426 1 2988 224 48 8 chr3 8158697 8159054 -219365524 + MER21B LTR ERV1 352 754 -109 359 150 75 0 chr3 8159343 8159423 -219365155 - MER53 DNA DNA -81 108 23 355 145 43 0 chr3 8159364 8159433 -219365145 + MER53 DNA DNA 116 187 -2 * 228 182 0 0 chr3 8161290 8161334 -219363244 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 1543 208 7 11 chr3 8161335 8161619 -219362959 - AluJo SINE Alu -21 291 9 233 309 72 31 chr3 8161976 8162073 -219362505 - MIR SINE MIR -66 142 42 273 119 0 0 chr3 8162239 8162281 -219362297 + (CATA)n Simple_repeat Simple_repeat 2 43 0 2456 203 17 67 chr3 8162690 8163334 -219361244 - LTR9 LTR ERV1 0 612 1 1188 177 20 13 chr3 8163339 8163591 -219360987 - HUERS-P3 LTR ERV1 -6 8913 7163 225 263 18 0 chr3 8164507 8164564 -219360014 - L2 LINE L2 -5 3308 3251 555 336 85 24 chr3 8164690 8165068 -219359510 + LTR16C LTR ERVL 76 476 -15 499 270 0 0 chr3 8165082 8165193 -219359385 - MIR SINE MIR -115 147 37 1160 152 5 5 chr3 8165371 8165575 -219359003 + L1MB1 LINE L1 5960 6163 -5 595 238 161 9 chr3 8165609 8165832 -219358746 + MIR SINE MIR 6 262 0 926 216 82 5 chr3 8167308 8167516 -219357062 + MER58A DNA MER1_type 1 224 0 2824 123 82 14 chr3 8167710 8168222 -219356356 - LTR10A LTR ERV1 -62 547 1 12457 207 16 20 chr3 8168271 8171349 -219353229 - LTR10A-int LTR ERV1 0 7784 4065 4571 81 33 0 chr3 8171320 8172038 -219352540 - Harlequin LTR ERV1 -4320 2576 1835 * 329 191 167 0 chr3 8172053 8172137 -219352441 + LTR8 LTR ERV1 156 253 -438 1324 91 5 5 chr3 8172141 8172339 -219352239 - LTR10A-int LTR ERV1 -2805 2781 2584 * 4213 239 14 23 chr3 8172335 8173539 -219351039 - LTR10A-int LTR ERV1 -3034 4112 2686 2893 187 6 6 chr3 8173519 8174239 -219350339 - LTR10A-int LTR ERV1 -3963 2686 2202 * 314 157 79 0 chr3 8174227 8174316 -219350262 - LTR10A-int LTR ERV1 -4705 1944 1849 * 365 198 10 0 chr3 8174319 8174420 -219350158 + CT-rich Low_complexity Low_complexity 2 103 0 3997 114 5 3 chr3 8174452 8175084 -219349494 - LTR10A-int LTR ERV1 -4783 1866 1234 2533 141 53 4 chr3 8175068 8175522 -219349056 - LTR10A-int LTR ERV1 -5628 1021 546 * 1456 180 21 7 chr3 8175636 8175920 -219348658 - LTR10A-int LTR ERV1 -6359 290 3 2858 126 78 17 chr3 8175933 8176449 -219348129 - LTR10A LTR ERV1 -62 547 1 307 241 41 76 chr3 8176975 8177120 -219347458 - L2 LINE L2 -2 3311 3172 453 277 124 10 chr3 8177130 8177332 -219347246 + MIR SINE MIR 31 255 -7 1661 181 107 60 chr3 8177553 8178066 -219346512 - LTR10A LTR ERV1 -61 548 12 16234 102 29 51 chr3 8178077 8180925 -219343653 - Harlequin LTR ERV1 -4 6645 1906 11519 56 1 3 chr3 8180925 8183164 -219341414 - L1PA5 LINE L1 -13 6141 3906 16234 102 29 51 chr3 8183164 8184164 -219340414 - Harlequin LTR ERV1 -4743 1906 886 488 288 71 91 chr3 8184542 8184882 -219339696 - L2 LINE L2 -1 3271 2939 334 253 0 0 chr3 8184882 8184961 -219339617 - MER116 DNA Mariner 0 80 2 3005 165 25 77 chr3 8185563 8186292 -219338286 - LTR8 LTR ERV1 0 691 1 545 286 33 15 chr3 8187174 8187376 -219337202 - MIR SINE MIR -19 243 33 676 206 32 0 chr3 8187384 8187510 -219337068 - FLAM_A SINE Alu -12 130 1 341 385 37 7 chr3 8187544 8187679 -219336899 + MER5A DNA MER1_type 14 152 -37 346 197 215 5 chr3 8188198 8188307 -219336271 - MER5A DNA MER1_type 0 189 48 * 416 208 146 8 chr3 8188296 8188426 -219336152 - MER5A DNA MER1_type -41 148 1 255 248 9 124 chr3 8188657 8188770 -219335808 + MIR SINE MIR 82 181 -81 376 333 85 30 chr3 8188824 8189154 -219335424 + LTR33 LTR ERVL 105 452 -69 365 278 37 25 chr3 8189643 8189805 -219334773 + MLT1J LTR MaLR 347 510 -1 359 325 0 0 chr3 8189958 8190038 -219334540 + L2 LINE L2 3174 3253 -19 21 36 0 0 chr3 8190387 8190415 -219334163 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 8191207 8191228 -219333350 + AT_rich Low_complexity Low_complexity 1 21 0 395 339 41 67 chr3 8191338 8191927 -219332651 - L2 LINE L2 -2 3311 2741 1662 229 25 15 chr3 8192014 8192416 -219332162 + MLT2D LTR ERVL 1 406 -8 905 216 114 24 chr3 8193090 8193387 -219331191 + MER5C DNA MER1_type 1 324 0 23 0 0 0 chr3 8194151 8194174 -219330404 + AT_rich Low_complexity Low_complexity 1 23 0 475 195 27 87 chr3 8194738 8194887 -219329691 - MER5A DNA MER1_type -46 143 4 2116 148 0 7 chr3 8195433 8195743 -219328835 + AluSq SINE Alu 1 308 -5 424 190 153 21 chr3 8195759 8195937 -219328641 - MER58 DNA MER1_type -1 2419 1 2309 114 0 0 chr3 8196014 8196311 -219328267 - AluSc SINE Alu -12 297 1 2159 77 46 3 chr3 8196313 8196598 -219327980 - AluSx SINE Alu -15 297 1 21 0 0 0 chr3 8196598 8196619 -219327959 + AT_rich Low_complexity Low_complexity 1 21 0 428 286 160 28 chr3 8197128 8197341 -219327237 - MIR SINE MIR -11 251 11 189 107 0 0 chr3 8197519 8197547 -219327031 + (TCCCC)n Simple_repeat Simple_repeat 3 30 0 346 108 31 0 chr3 8197670 8197735 -219326843 + C-rich Low_complexity Low_complexity 4 70 0 1048 199 28 5 chr3 8197999 8198210 -219326368 - MER58A DNA MER1_type -3 221 6 577 306 41 30 chr3 8198470 8198741 -219325837 + MLT1G1 LTR MaLR 11 284 -311 354 23 0 0 chr3 8198944 8198987 -219325591 + (CA)n Simple_repeat Simple_repeat 1 43 0 782 236 15 10 chr3 8199162 8199357 -219325221 + MER58A DNA MER1_type 21 216 -8 441 281 84 0 chr3 8199363 8199530 -219325048 + MLT1G1 LTR MaLR 410 590 0 621 269 31 62 chr3 8200833 8201090 -219323488 + MIR SINE MIR 7 255 -7 2005 136 48 57 chr3 8201783 8202260 -219322318 + ERVL-B1 LTR ERVL 5285 5757 -7 1091 228 31 49 chr3 8202260 8202697 -219321881 + MLT2B1 LTR ERVL 1 434 -30 456 51 0 0 chr3 8202697 8202756 -219321822 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1091 228 31 49 chr3 8202756 8202787 -219321791 + MLT2B1 LTR ERVL 434 464 0 444 180 0 22 chr3 8202962 8203051 -219321527 + LTR16A1 LTR ERVL 371 457 0 196 152 0 0 chr3 8204243 8204276 -219320302 + MIR SINE MIR 157 189 -73 304 294 101 0 chr3 8204712 8204831 -219319747 - MER117 DNA MER1_type -65 132 2 526 162 48 0 chr3 8204913 8205018 -219319560 - L1PA11 LINE L1 0 6174 6065 1226 198 42 6 chr3 8205231 8205544 -219319034 + MER33 DNA MER1_type 1 324 0 225 288 45 30 chr3 8205872 8205938 -219318640 + L2 LINE L2 3166 3232 -40 591 293 164 8 chr3 8206082 8206338 -219318240 - LTR16C LTR ERVL -10 481 186 275 322 71 31 chr3 8207686 8207915 -219316663 + L2 LINE L2 2772 3009 -263 209 181 193 48 chr3 8208381 8208464 -219316114 + L2 LINE L2 3219 3313 0 529 272 26 79 chr3 8209354 8209755 -219314823 + L2 LINE L2 2569 3029 -243 1679 215 28 50 chr3 8209773 8210238 -219314340 + MLT2B1 LTR ERVL 6 460 -60 258 280 57 64 chr3 8210307 8210464 -219314114 + L2 LINE L2 3122 3277 -36 2206 101 0 14 chr3 8211091 8211377 -219313201 - AluSc SINE Alu -8 301 20 2038 138 7 0 chr3 8211850 8212139 -219312439 - AluSx SINE Alu -19 293 3 180 0 0 0 chr3 8212236 8212256 -219312322 + (A)n Simple_repeat Simple_repeat 1 20 0 257 248 40 40 chr3 8212351 8212452 -219312126 - Charlie7 DNA MER1_type -2506 106 6 433 188 38 47 chr3 8212805 8213005 -219311573 + MER5C DNA MER1_type 3 280 -44 956 244 58 46 chr3 8213008 8213402 -219311176 + L1MA9 LINE L1 5876 6274 -38 202 189 0 0 chr3 8213446 8213483 -219311095 + MER5C DNA MER1_type 288 324 0 1770 72 0 32 chr3 8213693 8213944 -219310634 + L1PA6 LINE L1 5912 6154 0 323 278 38 15 chr3 8214220 8214353 -219310225 + MIR SINE MIR 79 214 -48 185 402 43 0 chr3 8214408 8214525 -219310053 - L2 LINE L2 -1 3312 3191 235 390 41 8 chr3 8214561 8214684 -219309894 + L2 LINE L2 3143 3269 -3 435 280 148 7 chr3 8214710 8215044 -219309534 - LTR16C LTR ERVL -31 460 50 25 0 0 0 chr3 8215265 8215290 -219309288 + AT_rich Low_complexity Low_complexity 1 25 0 463 300 176 5 chr3 8215624 8215834 -219308744 - MIR SINE MIR -12 250 5 362 264 50 41 chr3 8218565 8218686 -219305892 - L2 LINE L2 -1 3312 3191 2160 127 3 3 chr3 8218692 8218992 -219305586 - AluSx SINE Alu -12 300 1 235 361 31 0 chr3 8219058 8219188 -219305390 - MIR SINE MIR -6 256 123 389 289 49 14 chr3 8219207 8219349 -219305229 - MIR SINE MIR 0 262 116 356 213 53 43 chr3 8219761 8219855 -219304723 - MIR3 SINE MIR -15 193 99 701 235 42 0 chr3 8220126 8220292 -219304286 - MER5B DNA MER1_type -5 173 1 463 344 46 15 chr3 8220348 8220543 -219304035 - MIR SINE MIR -4 258 58 246 225 25 12 chr3 8220964 8221044 -219303534 + MLT1L LTR MaLR 181 261 -354 247 244 122 0 chr3 8221621 8221703 -219302875 + MLT1L LTR MaLR 517 608 -7 639 311 6 0 chr3 8221719 8221896 -219302682 - MER45A DNA AcHobo 0 178 1 180 326 54 71 chr3 8223205 8223389 -219301189 + L2 LINE L2 2873 3053 -219 1526 120 6 28 chr3 8223619 8223894 -219300684 - L1PA16 LINE L1 -457 5727 5462 1450 123 27 116 chr3 8223910 8224412 -219300166 + L1PA16 LINE L1 5719 6129 -2 222 313 104 0 chr3 8224564 8224631 -219299947 + L2 LINE L2 3240 3313 0 660 233 29 71 chr3 8225703 8226018 -219298560 - MLT1E2 LTR MaLR -304 201 2 394 313 46 0 chr3 8227039 8227170 -219297408 + L2 LINE L2 2670 2806 -508 192 206 143 32 chr3 8227174 8227237 -219297341 + MER5C DNA MER1_type 1 70 -254 272 288 25 0 chr3 8227347 8227427 -219297151 + (TATATG)n Simple_repeat Simple_repeat 6 87 0 426 256 22 112 chr3 8227476 8227788 -219296790 + L2 LINE L2 3020 3303 -10 219 186 0 0 chr3 8227831 8227874 -219296704 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 213 39 0 0 chr3 8227874 8227900 -219296678 + (CA)n Simple_repeat Simple_repeat 2 27 0 3828 148 43 40 chr3 8227903 8228676 -219295902 - LTR1 LTR ERV1 0 785 11 229 247 82 24 chr3 8229561 8229646 -219294932 - MIR SINE MIR -70 192 103 889 230 25 0 chr3 8229755 8229990 -219294588 + L1MA9 LINE L1 6035 6275 -37 531 261 84 104 chr3 8230091 8230239 -219294339 - L1MC4 LINE L1 -1 8041 7892 486 0 0 0 chr3 8230239 8230293 -219294285 + (CA)n Simple_repeat Simple_repeat 2 55 0 1110 195 125 35 chr3 8230295 8230608 -219293970 - MER2 DNA MER2_type -3 341 1 531 261 84 104 chr3 8230608 8231215 -219293363 - L1MC4 LINE L1 -151 7891 7298 613 268 93 34 chr3 8231228 8231616 -219292962 - L1M4 LINE L1 -3042 3104 2694 1100 200 17 13 chr3 8231725 8232025 -219292553 - L1MEc LINE L1 -1388 4692 4392 2126 224 48 64 chr3 8232037 8232312 -219292266 - L1MEc LINE L1 -2701 3379 3101 3123 127 8 0 chr3 8232312 8232794 -219291784 + LTR19A LTR ERV1 1 486 0 2126 224 48 64 chr3 8232794 8232960 -219291618 - L1MEc LINE L1 -2979 3101 2934 7107 57 18 3 chr3 8232960 8234479 -219290099 - L1PA6 LINE L1 -8 6146 4616 2126 224 48 64 chr3 8234479 8234937 -219289641 - L1MEc LINE L1 -3146 2934 2494 512 277 90 30 chr3 8235061 8235592 -219288986 - L1MEc LINE L1 -4574 1687 1125 2710 194 39 28 chr3 8235659 8236349 -219288229 - L1MA9 LINE L1 -108 6204 5507 226 281 117 10 chr3 8236383 8236682 -219287896 - L1MEc LINE L1 -5056 1014 684 272 150 33 0 chr3 8236682 8236742 -219287836 + (CTATT)n Simple_repeat Simple_repeat 1 62 0 257 239 60 26 chr3 8237053 8237170 -219287408 - L1MC4 LINE L1 -820 7222 7102 904 279 106 19 chr3 8237184 8237717 -219286861 - L1MC4 LINE L1 -886 6993 6346 355 167 0 0 chr3 8237720 8237786 -219286792 - L1ME2 LINE L1 -11 6153 6088 873 165 16 5 chr3 8238873 8239061 -219285517 - L1MC3 LINE L1 -1 7784 7595 1892 221 51 26 chr3 8239116 8239583 -219284995 - MLT2B1 LTR ERVL -41 479 1 1528 232 41 14 chr3 8239583 8240070 -219284508 + L1MC4 LINE L1 7542 8041 -1 2482 84 0 0 chr3 8240102 8240413 -219284165 - AluY SINE Alu 0 311 1 300 267 44 11 chr3 8240519 8240609 -219283969 - L2 LINE L2 -10 3303 3211 300 359 56 26 chr3 8240683 8240878 -219283700 - L2 LINE L2 -671 2643 2443 2445 61 0 0 chr3 8241453 8241750 -219282828 - AluY SINE Alu -10 301 5 230 253 44 33 chr3 8241788 8241879 -219282699 + HAL1 LINE L1 151 242 -2265 395 303 44 26 chr3 8241956 8242227 -219282351 + HAL1 LINE L1 2229 2504 -3 493 215 74 60 chr3 8242591 8242740 -219281838 - MER5B DNA MER1_type 0 178 28 400 296 8 0 chr3 8242842 8242974 -219281604 + MER117 DNA MER1_type 5 137 -60 23 0 0 0 chr3 8243063 8243086 -219281492 + AT_rich Low_complexity Low_complexity 1 23 0 248 325 105 44 chr3 8243261 8243375 -219281203 + L2 LINE L2 3144 3264 -8 426 283 46 16 chr3 8244028 8244339 -219280239 + MLT1G1 LTR MaLR 1 292 -298 577 286 68 32 chr3 8244697 8244917 -219279661 + MIR SINE MIR 32 259 -3 2303 62 7 36 chr3 8245550 8245855 -219278723 + AluY SINE Alu 1 296 -15 3208 70 14 0 chr3 8247020 8247575 -219277003 + L1P3 LINE L1 5137 5700 -454 366 235 137 10 chr3 8247729 8247831 -219276747 + LTR33 LTR ERVL 78 192 -329 26 0 0 0 chr3 8248306 8248332 -219276246 + AT_rich Low_complexity Low_complexity 1 26 0 1228 205 15 11 chr3 8248417 8248743 -219275835 + MSTD LTR MaLR 13 396 0 183 129 0 0 chr3 8249981 8250012 -219274566 + (A)n Simple_repeat Simple_repeat 1 31 0 21 36 0 0 chr3 8250065 8250093 -219274485 + AT_rich Low_complexity Low_complexity 1 28 0 1170 50 0 38 chr3 8250495 8250654 -219273924 - AluY SINE Alu -1 310 158 198 304 63 13 chr3 8251880 8251959 -219272619 + MIR3 SINE MIR 118 200 -8 473 287 0 17 chr3 8253101 8253216 -219271362 - L2 LINE L2 -1 3271 3159 1501 250 108 14 chr3 8253241 8253733 -219270845 - MLT1F LTR MaLR -2 540 3 317 371 5 27 chr3 8253877 8254063 -219270515 - L2 LINE L2 -237 3035 2854 229 122 0 0 chr3 8254210 8254251 -219270327 - L1MB3 LINE L1 -7 6176 6136 1989 213 6 15 chr3 8254257 8254726 -219269852 - L1MB4 LINE L1 -114 6066 5602 443 111 10 61 chr3 8254750 8254849 -219269729 - L1MA5 LINE L1 0 6300 6207 2433 90 0 13 chr3 8254863 8255174 -219269404 - AluSg SINE Alu -3 307 1 1895 126 7 32 chr3 8256072 8256381 -219268197 + AluSx SINE Alu 1 301 -11 413 165 10 0 chr3 8257679 8257776 -219266802 + CT-rich Low_complexity Low_complexity 3 100 0 1096 306 126 61 chr3 8259276 8260355 -219264223 + L2 LINE L2 1986 3168 -145 1985 127 7 0 chr3 8260355 8260646 -219263932 + AluY SINE Alu 1 293 -18 1096 306 126 61 chr3 8260646 8260803 -219263775 + L2 LINE L2 3168 3313 0 198 420 23 0 chr3 8260968 8261099 -219263479 - L2 LINE L2 -345 2968 2835 1189 195 125 8 chr3 8261149 8261405 -219263173 - AluJb SINE Alu -19 293 8 185 237 32 75 chr3 8261955 8262048 -219262530 + MIR SINE MIR 174 262 0 991 171 28 32 chr3 8262117 8262333 -219262245 + MER20 DNA MER1_type 1 215 -4 233 289 36 12 chr3 8262417 8262500 -219262078 + L2 LINE L2 3185 3269 -3 478 316 23 6 chr3 8263003 8263174 -219261404 + MER5B DNA MER1_type 3 176 -2 217 278 42 14 chr3 8263530 8263602 -219260976 - L2 LINE L2 -2 3270 3197 726 212 7 0 chr3 8264567 8264704 -219259874 + MER5A DNA MER1_type 2 139 -50 482 168 147 7 chr3 8264722 8264865 -219259713 - L1MC3 LINE L1 -187 7598 7436 266 197 42 0 chr3 8264874 8264945 -219259633 - L1ME2 LINE L1 -1 6163 6090 292 210 0 0 chr3 8264947 8265009 -219259569 + MER5A DNA MER1_type 127 188 -1 198 286 48 0 chr3 8265226 8265289 -219259289 - MIR SINE MIR 0 262 197 12665 135 32 10 chr3 8265297 8267475 -219257103 + Tigger1 DNA MER2_type 24 2249 -169 317 127 82 9 chr3 8267486 8267596 -219256982 + (TA)n Simple_repeat Simple_repeat 2 119 0 263 60 15 104 chr3 8267596 8267663 -219256915 + LTR66 LTR ERVL 379 439 -171 1566 197 50 9 chr3 8267711 8268031 -219256547 + LTR32 LTR ERVL 15 347 -124 666 232 0 19 chr3 8268131 8268286 -219256292 + LTR32 LTR ERVL 320 471 0 922 113 0 33 chr3 8268286 8268436 -219256142 + Tigger1 DNA MER2_type 2274 2418 0 246 358 20 47 chr3 8268960 8269108 -219255470 + MER5A DNA MER1_type 31 174 -15 718 233 28 128 chr3 8270320 8270363 -219254215 - MLT2D LTR ERVL -1 413 367 321 26 0 0 chr3 8270363 8270401 -219254177 + (TG)n Simple_repeat Simple_repeat 2 39 0 718 233 28 128 chr3 8270401 8270816 -219253762 - MLT2D LTR ERVL -47 367 1 3342 155 16 75 chr3 8271241 8271975 -219252603 + LTR8 LTR ERV1 1 691 0 604 290 6 0 chr3 8274160 8274322 -219250256 - MIR SINE MIR -8 254 92 465 256 80 8 chr3 8274375 8274500 -219250078 - MER45A DNA AcHobo -44 134 1 180 111 0 0 chr3 8274581 8274608 -219249970 + (T)n Simple_repeat Simple_repeat 1 27 0 1105 93 3 2 chr3 8274651 8274948 -219249630 + THE1A LTR MaLR 1 355 0 187 326 0 0 chr3 8277547 8277590 -219246988 - MIR SINE MIR -10 252 210 451 312 145 14 chr3 8278641 8278862 -219245716 - MIR SINE MIR 0 262 13 183 372 88 9 chr3 8278918 8279031 -219245547 + L2 LINE L2 3147 3268 -4 1147 209 83 55 chr3 8279119 8279555 -219245023 + LTR37B LTR ERV1 21 468 0 23 0 0 0 chr3 8279574 8279597 -219244981 + AT_rich Low_complexity Low_complexity 1 23 0 504 313 55 20 chr3 8279647 8279848 -219244730 - MIR SINE MIR -46 216 9 704 291 58 21 chr3 8279968 8280209 -219244369 - MIR SINE MIR 0 262 13 1770 128 89 13 chr3 8280730 8281034 -219243544 - MER1B DNA MER1_type 0 339 13 390 288 6 106 chr3 8281219 8281389 -219243189 - MER5A DNA MER1_type -36 153 1 207 222 0 48 chr3 8281631 8281694 -219242884 + GA-rich Low_complexity Low_complexity 1 60 0 1354 195 91 21 chr3 8281849 8281978 -219242600 + MLT1A1 LTR MaLR 3 121 -244 2345 84 7 0 chr3 8281978 8282276 -219242302 + AluY SINE Alu 6 305 -6 1354 195 91 21 chr3 8282276 8282485 -219242093 + MLT1A1 LTR MaLR 121 365 0 267 295 71 27 chr3 8282798 8282910 -219241668 + L2 LINE L2 3153 3269 -3 321 241 19 46 chr3 8283956 8284064 -219240514 - MLT1G1 LTR MaLR -25 570 466 510 289 50 5 chr3 8284141 8284382 -219240196 - MLT1H1 LTR MaLR -291 264 8 727 272 110 4 chr3 8284382 8284610 -219239968 + MIR SINE MIR 11 262 0 2556 61 0 0 chr3 8286458 8286769 -219237809 + AluY SINE Alu 1 311 0 22 0 0 0 chr3 8286863 8286885 -219237693 + AT_rich Low_complexity Low_complexity 1 22 0 219 209 12 23 chr3 8287000 8287086 -219237492 + (TTA)n Simple_repeat Simple_repeat 3 87 0 211 203 31 0 chr3 8287354 8287418 -219237160 + CT-rich Low_complexity Low_complexity 3 68 0 852 202 52 15 chr3 8287604 8287871 -219236707 + Charlie1b DNA MER1_type 149 425 -98 10022 38 4 1 chr3 8287874 8289874 -219234704 - L1PA4 LINE L1 -2 6153 4144 2755 40 0 0 chr3 8289874 8290228 -219234350 + L1P LINE L1 3831 4184 -1962 251 222 62 37 chr3 8290239 8290320 -219234258 + Charlie1b DNA MER1_type 435 517 -6 472 309 101 53 chr3 8290475 8291153 -219233425 - L1M4 LINE L1 -1085 5061 4356 279 185 31 15 chr3 8291442 8291507 -219233071 - MSTB2 LTR MaLR -391 66 1 1159 174 28 0 chr3 8292567 8292779 -219231799 - MER20 DNA MER1_type -1 218 1 27 62 0 0 chr3 8294013 8294061 -219230517 + AT_rich Low_complexity Low_complexity 1 48 0 2167 118 0 3 chr3 8294140 8294437 -219230141 + AluSg SINE Alu 1 296 -14 243 329 27 7 chr3 8294548 8294694 -219229884 - L1ME LINE L1 -233 5888 5740 1715 200 115 16 chr3 8294826 8295251 -219229327 + MLT1C LTR MaLR 1 467 0 182 197 15 76 chr3 8295505 8295571 -219229007 - MIR SINE MIR -16 246 185 410 269 15 54 chr3 8297239 8297369 -219227209 - L2 LINE L2 0 3272 3148 2381 67 0 0 chr3 8298878 8299189 -219225389 - AluY SINE Alu 0 311 1 442 316 58 12 chr3 8299582 8299753 -219224825 + MER5A DNA MER1_type 3 181 -8 509 304 40 13 chr3 8300374 8300598 -219223980 + MIR SINE MIR 33 262 0 241 222 74 28 chr3 8300958 8301066 -219223512 + LTR67 LTR ERVL 442 554 -3 276 303 23 8 chr3 8301201 8301333 -219223245 - L1ME LINE L1 -278 5843 5710 2241 185 58 28 chr3 8302628 8303245 -219221333 - Charlie1b DNA MER1_type -35 488 2091 972 183 33 15 chr3 8303245 8303591 -219220987 - MER31B LTR ERV1 -72 394 1 2719 214 67 30 chr3 8303593 8304350 -219220228 - Charlie1a DNA MER1_type -669 786 2 330 26 0 0 chr3 8304466 8304505 -219220073 + (TG)n Simple_repeat Simple_repeat 2 40 0 356 265 0 10 chr3 8304505 8304607 -219219971 + GA-rich Low_complexity Low_complexity 2 102 0 878 101 62 0 chr3 8305566 8305695 -219218883 + AluSc SINE Alu 165 301 -8 515 329 102 12 chr3 8305825 8306150 -219218428 + L1ME4a LINE L1 5590 5943 -178 2563 20 0 0 chr3 8307513 8307805 -219216773 + AluY SINE Alu 1 292 -19 561 355 22 16 chr3 8308365 8308548 -219216030 - MER91A DNA MER1_type -12 184 1 912 262 32 26 chr3 8309220 8309533 -219215045 - MER110 LTR ERV1 0 491 177 196 244 22 0 chr3 8310112 8310157 -219214421 + MIR SINE MIR 100 145 -63 592 259 49 11 chr3 8310202 8310387 -219214191 - MIR SINE MIR -13 249 58 333 320 28 118 chr3 8310633 8310989 -219213589 - L3 LINE CR1 -208 1369 1046 444 330 14 46 chr3 8311247 8311465 -219213113 + MIR SINE MIR 26 236 -26 2068 148 3 0 chr3 8311936 8312234 -219212344 - AluSx SINE Alu -13 299 1 219 258 54 54 chr3 8313346 8313439 -219211139 - MIR SINE MIR -94 168 76 1202 264 41 90 chr3 8313607 8314504 -219210074 - L1ME LINE L1 -5182 888 36 706 238 16 21 chr3 8314756 8314945 -219209633 - MER58A DNA MER1_type 0 224 37 4270 150 29 37 chr3 8316017 8316478 -219208100 - Tigger1 DNA MER2_type -9 2409 1957 3581 87 8 0 chr3 8316478 8316972 -219207606 + L1PA14 LINE L1 5664 6161 0 4270 150 29 37 chr3 8316972 8317351 -219207227 - Tigger1 DNA MER2_type -461 1957 1576 14219 167 18 24 chr3 8317357 8323365 -219201213 - L1MA3 LINE L1 0 7724 1091 333 0 0 0 chr3 8323365 8323402 -219201176 + (TG)n Simple_repeat Simple_repeat 2 38 0 14219 167 18 24 chr3 8323402 8324473 -219200105 - L1MA3 LINE L1 -6633 1091 16 9290 130 30 1 chr3 8324479 8325997 -219198581 - Tigger1 DNA MER2_type -834 1584 24 364 258 13 71 chr3 8326933 8326947 -219197631 + MER5A DNA MER1_type 1 5 -184 292 238 62 94 chr3 8326947 8327107 -219197471 - MER5A DNA MER1_type -2 187 33 554 327 115 4 chr3 8328092 8328318 -219196260 - MIR SINE MIR -10 252 2 187 292 0 31 chr3 8328526 8328591 -219195987 - MIR3 SINE MIR -13 195 133 261 0 0 0 chr3 8328750 8328779 -219195799 + (T)n Simple_repeat Simple_repeat 1 29 0 465 260 78 32 chr3 8328889 8329043 -219195535 - MIR SINE MIR 0 262 102 198 0 0 0 chr3 8329103 8329125 -219195453 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 7828 117 17 33 chr3 8330227 8331522 -219193056 - THE1B-int LTR MaLR -300 1280 7 2002 146 30 0 chr3 8331535 8331870 -219192708 - THE1B LTR MaLR -12 352 8 512 212 48 7 chr3 8331912 8332058 -219192520 - L1MD2 LINE L1 -13 6582 6431 3044 205 28 20 chr3 8332059 8332921 -219191657 - L1MD1 LINE L1 -208 6270 5515 2577 188 21 0 chr3 8332922 8333391 -219191187 - LTR42 LTR ERVL 0 495 17 255 273 0 15 chr3 8333409 8333475 -219191103 - PABL_B-int LTR ERV1 -696 6062 5998 401 302 0 0 chr3 8333723 8333829 -219190749 - PABL_B-int LTR ERV1 -450 6672 6567 207 0 0 0 chr3 8333980 8334003 -219190575 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 207 69 0 0 chr3 8334788 8334817 -219189761 + (A)n Simple_repeat Simple_repeat 1 29 0 656 319 58 47 chr3 8336785 8337292 -219187286 - LTR57-int LTR ERVL -3177 2870 2370 2082 169 53 19 chr3 8337292 8337707 -219186871 + MSTB1 LTR MaLR 4 432 0 656 319 58 47 chr3 8337707 8338188 -219186390 - LTR57-int LTR ERVL -3677 2370 1718 2564 175 50 8 chr3 8339978 8340453 -219184125 - LTR42 LTR ERVL 0 495 1 1549 253 6 37 chr3 8340453 8340962 -219183616 - L1MD1 LINE L1 -866 5516 5024 452 284 50 44 chr3 8340969 8341242 -219183336 - L1MD1 LINE L1 -3686 2696 2414 1700 189 0 0 chr3 8341242 8341539 -219183039 - AluJb SINE Alu -15 297 1 452 284 50 44 chr3 8341539 8341684 -219182894 - L1MD1 LINE L1 -3968 2414 2271 445 318 61 20 chr3 8341982 8342466 -219182112 - L1MD1 LINE L1 -4512 1870 1266 393 365 66 5 chr3 8342754 8342965 -219181613 - L1MD1 LINE L1 -5451 921 698 847 163 94 0 chr3 8343285 8343445 -219181133 + FRAM SINE Alu 1 174 -2 2746 84 25 5 chr3 8343512 8343906 -219180672 - L1PA13 LINE L1 0 6163 5762 1416 211 33 86 chr3 8343915 8344394 -219180184 + L1ME3 LINE L1 5709 6162 0 334 226 24 36 chr3 8345193 8345277 -219179301 + L2 LINE L2 3189 3271 -1 236 264 38 0 chr3 8345539 8345592 -219178986 - L2 LINE L2 -11 3261 3207 211 258 21 62 chr3 8346078 8346175 -219178403 + MIR SINE MIR 170 262 0 481 332 35 26 chr3 8346205 8346437 -219178141 + MIR SINE MIR 12 245 -17 247 310 0 0 chr3 8348013 8348071 -219176507 + polypyrimidine Low_complexity Low_complexity 3 60 0 25 0 0 0 chr3 8351297 8351322 -219173256 + AT_rich Low_complexity Low_complexity 1 25 0 710 261 86 27 chr3 8401528 8402049 -219122529 - HAL1b LINE L1 0 1348 797 243 61 0 0 chr3 8402671 8402704 -219121874 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2059 108 0 31 chr3 8402706 8402994 -219121584 - AluSx SINE Alu -33 279 1 208 256 179 96 chr3 8404014 8404170 -219120408 - MIR3 SINE MIR -38 170 2 340 266 190 32 chr3 8404558 8404782 -219119796 + L1ME4a LINE L1 5701 5959 -162 744 237 41 46 chr3 8404847 8405066 -219119512 + MER20 DNA MER1_type 2 219 0 2590 123 5 2 chr3 8405619 8406019 -219118559 + L1PB1 LINE L1 5751 6151 0 23 54 0 0 chr3 8406019 8406056 -219118522 + AT_rich Low_complexity Low_complexity 1 37 0 359 295 100 53 chr3 8406060 8406545 -219118033 - L1MC/D LINE L1 -747 5938 5783 1880 217 61 68 chr3 8406566 8407124 -219117454 + MLT2B3 LTR ERVL 1 554 0 2217 287 76 24 chr3 8407175 8409121 -219115457 - L1MC/D LINE L1 -1007 5533 3467 * 10331 204 24 32 chr3 8409118 8412837 -219111741 - L1PA16 LINE L1 -2 6164 2475 3506 281 86 15 chr3 8412833 8413123 -219111455 - L1MC/D LINE L1 -5149 1391 1123 * 9262 34 1 19 chr3 8413123 8415056 -219109522 - L1PA3 LINE L1 0 6155 4243 3506 281 86 15 chr3 8415056 8416039 -219108539 - L1MC/D LINE L1 -5417 1123 27 1895 286 100 38 chr3 8416042 8418401 -219106177 - L1ME LINE L1 -2295 3785 1302 498 251 107 2 chr3 8418403 8418585 -219105993 + MER58A DNA MER1_type 9 213 0 462 95 0 0 chr3 8418558 8418621 -219105957 + MADE1 DNA Mariner 1 63 -17 * 268 258 51 73 chr3 8418630 8418808 -219105770 - L1ME LINE L1 -4929 1151 978 334 268 176 35 chr3 8418873 8418982 -219105596 - L1ME LINE L1 -5148 934 842 2382 80 6 6 chr3 8418982 8419295 -219105283 - AluSq SINE Alu 0 313 1 334 268 176 35 chr3 8419295 8419505 -219105073 - L1ME LINE L1 -5240 842 677 2319 45 28 0 chr3 8420304 8420593 -219103985 + AluY SINE Alu 1 297 -14 242 216 54 40 chr3 8420593 8420667 -219103911 - MER72 LTR ERV1 -643 79 5 804 155 14 20 chr3 8420669 8420817 -219103761 - FRAM SINE Alu -26 150 4 2325 78 10 0 chr3 8420833 8421128 -219103450 - AluSc SINE Alu -11 298 1 421 211 41 88 chr3 8421154 8421325 -219103253 + L1MC4a LINE L1 5730 5892 -1916 1833 151 18 0 chr3 8421326 8421605 -219102973 + AluSx SINE Alu 1 284 -28 2434 57 0 0 chr3 8421605 8421901 -219102677 + AluY SINE Alu 1 296 -15 347 281 34 0 chr3 8422402 8422491 -219102087 - L2 LINE L2 0 3313 3222 207 100 0 0 chr3 8422594 8422624 -219101954 + (CATA)n Simple_repeat Simple_repeat 2 31 0 862 303 85 8 chr3 8423966 8424329 -219100249 - MLT1I LTR MaLR 0 409 19 572 283 72 0 chr3 8424573 8424753 -219099825 - LTR16C LTR ERVL -2 489 297 317 272 19 19 chr3 8424766 8424869 -219099709 - LTR16B LTR ERVL 0 464 362 494 326 80 5 chr3 8424937 8425124 -219099454 - LTR16B LTR ERVL -263 201 1 348 326 96 17 chr3 8425131 8425309 -219099269 - LTR16C LTR ERVL -210 281 90 2260 109 0 6 chr3 8425494 8425805 -219098773 + AluSq SINE Alu 1 309 -4 388 217 12 12 chr3 8425937 8426020 -219098558 + MIR SINE MIR 86 168 -94 358 274 44 9 chr3 8426034 8426147 -219098431 + MIR SINE MIR 94 210 -52 399 313 94 40 chr3 8426393 8426668 -219097910 + MLT1J LTR MaLR 218 507 -4 203 260 41 55 chr3 8426943 8427016 -219097562 - MIR SINE MIR 0 262 191 389 97 14 0 chr3 8427635 8427707 -219096871 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 2062 131 86 0 chr3 8427724 8428060 -219096518 + Tigger2 DNA MER2_type 2353 2717 -1 234 81 0 0 chr3 8428060 8428097 -219096481 + (TG)n Simple_repeat Simple_repeat 2 38 0 316 179 208 38 chr3 8428785 8428891 -219095687 - L3 LINE CR1 -116 1461 1338 185 108 27 0 chr3 8429170 8429207 -219095371 + A-rich Low_complexity Low_complexity 1 38 0 709 224 0 34 chr3 8429381 8429528 -219095050 + Tigger3(Golem) DNA MER2_type 1 142 -2887 * 1382 177 4 38 chr3 8429526 8429679 -219094899 + Tigger3(Golem) DNA MER2_type 2782 2924 -114 1702 225 80 104 chr3 8429679 8430525 -219094053 + LTR1B LTR ERV1 1 826 0 1382 177 4 38 chr3 8430525 8430637 -219093941 + Tigger3(Golem) DNA MER2_type 2924 3038 0 586 264 52 26 chr3 8431087 8431356 -219093222 - MER97c DNA MER1_type? -1 1089 814 875 259 95 15 chr3 8431634 8431896 -219092682 - MER97a DNA MER1_type? -288 606 324 574 273 65 96 chr3 8432032 8432081 -219092497 + MLT1J LTR MaLR 166 215 -296 1793 116 0 4 chr3 8432081 8432331 -219092247 + AluSg SINE Alu 47 295 -15 574 273 65 96 chr3 8432331 8432603 -219091975 + MLT1J LTR MaLR 215 477 -34 181 214 309 0 chr3 8432768 8432852 -219091726 + MIR SINE MIR 142 251 -11 659 230 105 0 chr3 8433133 8433285 -219091293 + MER96 DNA MER1_type? 8 175 0 545 272 11 88 chr3 8433534 8433817 -219090761 - L1ME3 LINE L1 0 6162 5902 * 1121 246 62 22 chr3 8433814 8434278 -219090300 - L1M4 LINE L1 -1715 4431 3949 2277 229 35 63 chr3 8434362 8434664 -219089914 - L1ME1 LINE L1 -44 6122 5813 1702 163 3 10 chr3 8434664 8434952 -219089626 - AluSx SINE Alu -26 286 1 2277 229 35 63 chr3 8434952 8435444 -219089134 - L1ME1 LINE L1 -353 5813 5350 6709 75 2 5 chr3 8435501 8436812 -219087766 - L1PA6 LINE L1 0 6154 4843 25792 38 3 0 chr3 8436814 8440887 -219083691 + L1PA4 LINE L1 2013 6092 -63 1802 218 46 3 chr3 8441386 8441776 -219082802 - ERVL LTR ERVL -4169 1595 1189 3015 243 73 4 chr3 8441776 8442575 -219082003 - ERVL LTR ERVL -4735 1029 176 539 271 65 72 chr3 8442849 8443373 -219081205 - L1MC4a LINE L1 -820 7222 6618 611 201 7 0 chr3 8443381 8443520 -219081058 - L1MA4A LINE L1 0 6303 6164 2141 185 33 2 chr3 8443520 8444001 -219080577 - L1 LINE L1 -1118 5028 4533 1253 230 84 44 chr3 8444206 8444549 -219080029 - LTR18A LTR ERVL 0 357 1 1902 123 0 32 chr3 8444550 8444859 -219079719 - HERVL18 LTR ERVL 0 6047 5749 1535 151 4 4 chr3 8444860 8445112 -219079466 - HERVL18 LTR ERVL -262 5785 5534 1631 290 39 31 chr3 8445427 8446013 -219078565 + MLT1E LTR MaLR 3 593 0 283 193 0 0 chr3 8446194 8446251 -219078327 - Charlie5 DNA MER1_type -27 2585 2529 276 277 15 42 chr3 8446589 8446828 -219077750 + CT-rich Low_complexity Low_complexity 1 232 0 220 149 19 56 chr3 8446829 8446936 -219077642 + T-rich Low_complexity Low_complexity 5 107 0 6197 35 2 1 chr3 8447028 8448422 -219076156 - L1PA2 LINE L1 -156 5999 4605 36079 88 5 6 chr3 8448523 8454383 -219070195 - L1PA4 LINE L1 -292 5863 11 1950 261 79 19 chr3 8454390 8455287 -219069291 - L1M4 LINE L1 -789 5357 4407 603 224 90 52 chr3 8455329 8455478 -219069100 - L1MCc LINE L1 -6130 293 128 2075 148 0 3 chr3 8455478 8455496 -219069082 - AluSq SINE Alu -9 304 287 333 0 0 0 chr3 8455496 8455533 -219069045 + (TG)n Simple_repeat Simple_repeat 2 38 0 2075 148 0 3 chr3 8455533 8455818 -219068760 - AluSq SINE Alu -26 287 2 603 224 90 52 chr3 8455818 8455936 -219068642 - L1MCc LINE L1 -6295 128 16 479 270 96 17 chr3 8455941 8456296 -219068282 - L1M4 LINE L1 -3177 2969 2587 2016 121 7 33 chr3 8456307 8456613 -219067965 + AluSx SINE Alu 1 298 -14 527 291 24 12 chr3 8456623 8456874 -219067704 - L1M4 LINE L1 -3625 2521 2268 184 294 0 20 chr3 8457019 8457070 -219067508 - L2 LINE L2 -1 3312 3263 271 228 0 18 chr3 8458283 8458340 -219066238 - L2 LINE L2 -94 3219 3164 298 313 91 20 chr3 8459632 8459731 -219064847 + MIR SINE MIR 41 146 -62 294 29 0 0 chr3 8460058 8460093 -219064485 + (TG)n Simple_repeat Simple_repeat 1 35 0 189 373 59 0 chr3 8460131 8460233 -219064345 + L2 LINE L2 3151 3258 -14 1976 133 0 29 chr3 8460357 8460665 -219063913 - AluSx SINE Alu -13 299 1 350 228 60 92 chr3 8461367 8461551 -219063027 + MER5B DNA MER1_type 1 178 0 4236 158 44 31 chr3 8462886 8463798 -219060780 - L1MA9 LINE L1 -2 6310 5387 1092 132 114 9 chr3 8463796 8464023 -219060555 - L1PA15 LINE L1 0 6165 5915 * 557 198 0 16 chr3 8464021 8464142 -219060436 + L1P LINE L1 4527 4645 -1501 * 4127 151 20 35 chr3 8464155 8464873 -219059705 - L1PA15 LINE L1 -257 5908 5181 228 35 0 0 chr3 8464873 8464902 -219059676 + (TG)n Simple_repeat Simple_repeat 1 29 0 4127 151 20 35 chr3 8464902 8465714 -219058864 - L1PA15 LINE L1 -984 5181 4410 4896 214 20 7 chr3 8465724 8466887 -219057691 + L1P LINE L1 2995 4172 -1974 2158 147 57 22 chr3 8466888 8467401 -219057177 + MLT2A2 LTR ERVL 1 554 0 968 193 23 0 chr3 8467403 8467621 -219056957 + L1P LINE L1 4171 4393 -1753 * 3555 242 39 45 chr3 8467618 8468503 -219056075 - L1MA9 LINE L1 -748 5398 4509 1196 129 0 0 chr3 8468503 8468673 -219055905 - AluSq SINE Alu -11 302 133 3555 242 39 45 chr3 8468673 8468803 -219055775 - L1MA9 LINE L1 -1637 4509 4380 189 0 0 0 chr3 8468803 8468824 -219055754 + (TG)n Simple_repeat Simple_repeat 2 22 0 3555 242 39 45 chr3 8468824 8469851 -219054727 - L1MA9 LINE L1 -1766 4380 3293 1104 211 32 12 chr3 8469873 8470119 -219054459 + AluJo SINE Alu 61 311 -1 22 0 0 0 chr3 8470171 8470193 -219054385 + AT_rich Low_complexity Low_complexity 1 22 0 2427 76 0 0 chr3 8470193 8470496 -219054082 - AluY SINE Alu -8 303 1 384 235 53 8 chr3 8470728 8470860 -219053718 + MER113 DNA MER1_type? 1 138 -383 23 54 0 0 chr3 8470890 8470927 -219053651 + AT_rich Low_complexity Low_complexity 1 37 0 206 232 36 18 chr3 8474342 8474398 -219050180 - MIR SINE MIR -154 108 52 254 273 121 0 chr3 8474872 8474971 -219049607 - MLT1K LTR MaLR -106 482 372 1422 113 85 0 chr3 8475448 8475660 -219048918 + MER30 DNA MER1_type 1 230 0 436 299 17 69 chr3 8476787 8477018 -219047560 + MLT1G1 LTR MaLR 60 278 -317 920 112 11 28 chr3 8477154 8477332 -219047246 + (TTCC)n Simple_repeat Simple_repeat 2 176 0 475 306 121 94 chr3 8477903 8478081 -219046497 - L2 LINE L2 0 3272 3100 1659 86 18 0 chr3 8478081 8478303 -219046275 + MER30 DNA MER1_type 5 230 0 475 306 121 94 chr3 8478303 8478907 -219045671 - L2 LINE L2 -172 3100 2430 2167 121 0 0 chr3 8478907 8479212 -219045366 + AluSc SINE Alu 1 305 0 475 306 121 94 chr3 8479212 8479501 -219045077 - L2 LINE L2 -842 2430 2150 21 36 0 0 chr3 8479593 8479621 -219044957 + AT_rich Low_complexity Low_complexity 1 28 0 204 125 0 0 chr3 8480278 8480310 -219044268 + (TTCC)n Simple_repeat Simple_repeat 2 33 0 2522 74 0 0 chr3 8481058 8481370 -219043208 - AluSx SINE Alu 0 312 1 225 0 0 0 chr3 8481702 8481727 -219042851 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 246 105 0 0 chr3 8481757 8481795 -219042783 + (A)n Simple_repeat Simple_repeat 1 38 0 186 103 0 0 chr3 8482045 8482074 -219042504 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 291 235 92 50 chr3 8482136 8482255 -219042323 - L2 LINE L2 -61 3252 3129 1313 287 85 29 chr3 8482300 8482729 -219041849 + L2 LINE L2 2462 2929 -384 2464 213 25 46 chr3 8482729 8483364 -219041214 + MLT1E3 LTR MaLR 1 622 -2 1313 287 85 29 chr3 8483364 8483499 -219041079 + L2 LINE L2 2929 3055 -258 1971 153 155 23 chr3 8483568 8484000 -219040578 - LTR45B LTR ERV1 0 489 1 336 309 9 36 chr3 8484190 8484300 -219040278 + L2 LINE L2 3173 3279 -34 348 387 61 21 chr3 8484322 8484610 -219039968 - L2 LINE L2 -219 3094 2785 1674 212 111 3 chr3 8484610 8484996 -219039582 + MSTA LTR MaLR 1 428 0 348 387 61 21 chr3 8484996 8485063 -219039515 - L2 LINE L2 -528 2785 2722 223 295 49 0 chr3 8485371 8485432 -219039146 + L2 LINE L2 3228 3291 -22 281 325 145 30 chr3 8485501 8485701 -219038877 + MIR SINE MIR 40 262 0 2854 65 17 12 chr3 8485818 8486220 -219038358 - MLT2A1 LTR ERVL -40 404 1 2377 67 0 7 chr3 8486232 8486530 -219038048 - AluY SINE Alu -15 296 1 24 0 0 0 chr3 8487608 8487632 -219036946 + AT_rich Low_complexity Low_complexity 1 24 0 288 319 115 44 chr3 8487904 8488086 -219036492 - LTR16C LTR ERVL -9 482 288 272 164 0 36 chr3 8488975 8489030 -219035548 - MIR SINE MIR -98 164 112 838 179 48 42 chr3 8489039 8489207 -219035371 - MER5A DNA MER1_type -20 169 1 201 292 186 9 chr3 8489259 8489372 -219035206 + L2 LINE L2 3134 3266 -6 282 244 108 114 chr3 8489983 8490159 -219034419 + MER5B DNA MER1_type 4 178 0 1097 181 67 99 chr3 8490167 8490321 -219034257 - MER58B DNA MER1_type -2079 341 184 1852 156 54 23 chr3 8490321 8490674 -219033904 - THE1B LTR MaLR 0 364 1 10896 103 35 0 chr3 8490674 8492201 -219032377 - THE1B-int LTR MaLR 0 1580 1 1879 154 78 23 chr3 8492201 8492546 -219032032 - THE1B LTR MaLR 0 364 1 1097 181 67 99 chr3 8492546 8492731 -219031847 - MER58B DNA MER1_type -2233 187 11 1140 164 37 85 chr3 8494128 8494518 -219030060 - MLT1A1 LTR MaLR -4 392 1 1637 212 113 42 chr3 8495389 8495893 -219028685 - MLT1F LTR MaLR 0 542 3 341 277 63 19 chr3 8496235 8496394 -219028184 - L1ME LINE L1 -570 5551 5386 22 0 0 0 chr3 8496507 8496529 -219028049 + AT_rich Low_complexity Low_complexity 1 22 0 1948 158 43 3 chr3 8497740 8498087 -219026491 + MER46B DNA MER2_type 1 236 0 187 237 68 93 chr3 8498595 8498713 -219025865 + MIR SINE MIR 147 261 -1 234 105 0 0 chr3 8499434 8499472 -219025106 + (CA)n Simple_repeat Simple_repeat 2 39 0 249 261 11 11 chr3 8499802 8499894 -219024684 - MLT1I LTR MaLR -8 401 310 248 181 28 17 chr3 8500625 8500697 -219023881 - MLT1J1 LTR MaLR -328 118 45 566 134 0 0 chr3 8500798 8500895 -219023683 - L1P LINE L1 -1389 4757 4661 3490 65 0 0 chr3 8500895 8501378 -219023200 + L1PA8 LINE L1 5691 6173 0 560 255 108 28 chr3 8501880 8502092 -219022486 + MIR SINE MIR 34 262 0 180 111 0 0 chr3 8502249 8502276 -219022302 + (CCA)n Simple_repeat Simple_repeat 1 27 0 349 121 69 0 chr3 8502289 8502347 -219022231 + ERVL LTR ERVL 4862 4923 -841 309 26 0 0 chr3 8502352 8502390 -219022188 + (CA)n Simple_repeat Simple_repeat 2 39 0 257 75 25 0 chr3 8502517 8502557 -219022021 + (TG)n Simple_repeat Simple_repeat 2 42 0 251 282 9 0 chr3 8502703 8502813 -219021765 + (TA)n Simple_repeat Simple_repeat 1 111 0 1591 231 5 21 chr3 8502815 8503192 -219021386 - MLT2D LTR ERVL -43 371 1 760 192 0 30 chr3 8503192 8503359 -219021219 - ERVL-D LTR ERVL -7 5757 5596 288 158 0 0 chr3 8503359 8503416 -219021162 + (TA)n Simple_repeat Simple_repeat 1 57 0 180 158 0 0 chr3 8503466 8503504 -219021074 + (TA)n Simple_repeat Simple_repeat 1 38 0 271 255 108 20 chr3 8503615 8503717 -219020861 - MIR SINE MIR -60 202 92 210 71 0 0 chr3 8503811 8503839 -219020739 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 1977 173 32 28 chr3 8505809 8506357 -219018221 - MLT2A2 LTR ERVL 0 554 2 1949 91 22 0 chr3 8507051 8507326 -219017252 + L1PA10 LINE L1 5879 6159 -9 396 0 0 0 chr3 8507327 8507371 -219017207 + (TA)n Simple_repeat Simple_repeat 2 45 0 23 33 0 0 chr3 8507399 8507429 -219017149 + AT_rich Low_complexity Low_complexity 1 30 0 738 243 117 73 chr3 8507507 8507900 -219016678 + MLT1D LTR MaLR 2 421 -84 2110 141 33 25 chr3 8507900 8508261 -219016317 + THE1B LTR MaLR 1 364 0 738 243 117 73 chr3 8508261 8508345 -219016233 + MLT1D LTR MaLR 421 500 -5 245 376 9 9 chr3 8508504 8508613 -219015965 - L2 LINE L2 -15 3298 3190 31 26 0 0 chr3 8509253 8509291 -219015287 + AT_rich Low_complexity Low_complexity 1 38 0 2409 46 0 3 chr3 8509784 8510101 -219014477 - AluY SINE Alu 0 316 1 216 308 13 13 chr3 8511624 8511702 -219012876 + CT-rich Low_complexity Low_complexity 2 79 0 498 254 65 72 chr3 8511796 8512335 -219012243 + L1ME3 LINE L1 4456 4990 -1156 354 281 102 10 chr3 8512434 8512630 -219011948 + L1ME3 LINE L1 5119 5332 -814 2120 138 3 3 chr3 8512677 8512989 -219011589 + AluSx SINE Alu 1 312 0 3292 165 78 44 chr3 8513047 8513888 -219010690 + L1MC3 LINE L1 6908 7777 -8 412 265 137 24 chr3 8514016 8514314 -219010264 + L1ME3 LINE L1 5560 5894 -276 608 191 0 17 chr3 8514660 8514775 -219009803 - FLAM_A SINE Alu -19 114 2 206 226 129 43 chr3 8515994 8516087 -219008491 - L2 LINE L2 -5 3308 3208 523 299 114 0 chr3 8516130 8516297 -219008281 + MIR SINE MIR 49 234 -28 199 188 0 0 chr3 8516397 8516429 -219008149 - MIR SINE MIR -16 246 215 2155 159 55 26 chr3 8517523 8517939 -219006639 - MSTC LTR MaLR 0 428 1 568 279 128 11 chr3 8517939 8518118 -219006460 - MIR SINE MIR -4 258 59 2614 108 59 16 chr3 8518287 8518645 -219005933 + MLT2A1 LTR ERVL 1 342 -102 321 26 0 0 chr3 8518645 8518683 -219005895 + (TC)n Simple_repeat Simple_repeat 2 39 0 189 0 0 0 chr3 8518682 8518703 -219005875 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 2614 108 59 16 chr3 8518683 8518770 -219005808 + MLT2A1 LTR ERVL 342 444 0 305 23 0 23 chr3 8518783 8518826 -219005752 + (TA)n Simple_repeat Simple_repeat 2 43 0 314 88 18 18 chr3 8518873 8518930 -219005648 + MLT2B1 LTR ERVL 464 520 0 27641 70 11 5 chr3 8518930 8522639 -219001939 + HERVL-B1-A1 LTR ERVL 1 3731 -1923 3949 134 176 28 chr3 8522639 8523626 -219000952 + MER11B LTR ERVK 1 1232 -4 14487 69 7 4 chr3 8523631 8525554 -218999024 + HERVL-B1-A1 LTR ERVL 3726 5654 0 1255 110 46 5 chr3 8525554 8525773 -218998805 + MLT2A1 LTR ERVL 1 228 -216 508 90 13 0 chr3 8525773 8525851 -218998727 + L1PA16 LINE L1 6079 6157 -9 323 291 57 19 chr3 8526757 8526915 -218997663 + MLT1K LTR MaLR 354 517 -71 22 70 0 0 chr3 8527413 8527456 -218997122 + AT_rich Low_complexity Low_complexity 1 43 0 394 241 143 0 chr3 8527504 8527637 -218996941 + MER103 DNA DNA 13 164 -2 213 291 121 21 chr3 8527758 8527899 -218996679 + MIR SINE MIR 72 226 -36 417 54 0 0 chr3 8528042 8528098 -218996480 + (CA)n Simple_repeat Simple_repeat 1 56 0 420 306 65 18 chr3 8529319 8529493 -218995085 - MIR SINE MIR -62 146 3 189 0 0 0 chr3 8530948 8530969 -218993609 + (CA)n Simple_repeat Simple_repeat 1 21 0 27 29 0 0 chr3 8531546 8531580 -218992998 + AT_rich Low_complexity Low_complexity 1 34 0 6479 48 0 0 chr3 8531580 8532400 -218992178 - L1PA5 LINE L1 -6 6148 5329 372 316 90 11 chr3 8533857 8534034 -218990544 - MIR SINE MIR -56 206 16 1227 217 126 7 chr3 8534247 8534556 -218990022 - MSTD LTR MaLR -50 346 1 723 251 108 35 chr3 8534925 8535267 -218989311 + MER110A LTR ERV1 40 406 -62 23595 134 52 50 chr3 8535305 8540161 -218984417 - L1P LINE L1 -1268 4878 12 1083 146 25 33 chr3 8540297 8540537 -218984041 - THE1C LTR MaLR -2 373 136 29333 132 17 55 chr3 8540537 8546520 -218978058 - L1P3 LINE L1 -401 5753 13 9280 142 24 27 chr3 8546516 8548052 -218976526 - THE1C-int LTR MaLR -51 1684 1 * 1697 160 26 50 chr3 8548054 8548436 -218976142 - THE1C LTR MaLR -2 373 1 495 0 0 0 chr3 8548692 8548747 -218975831 + (CA)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr3 8548809 8548830 -218975748 + AT_rich Low_complexity Low_complexity 1 21 0 1018 253 0 0 chr3 8549044 8549265 -218975313 + MER58A DNA MER1_type 1 221 -3 238 243 157 0 chr3 8549278 8549369 -218975209 + MER5A DNA MER1_type 4 112 -77 276 250 11 11 chr3 8551367 8551455 -218973123 + MLT1J1 LTR MaLR 341 428 -18 191 188 83 0 chr3 8551793 8551841 -218972737 + L2 LINE L2 3221 3272 0 208 254 0 70 chr3 8552750 8552821 -218971757 + MIR SINE MIR 197 262 0 635 318 102 27 chr3 8553207 8553751 -218970827 - L2 LINE L2 0 3313 2730 517 304 44 0 chr3 8554700 8554881 -218969697 - MER5A DNA MER1_type 0 189 1 1848 263 33 44 chr3 8555802 8555855 -218968723 + L1MA8 LINE L1 466 518 -6971 180 0 0 0 chr3 8555855 8555875 -218968703 + (CA)n Simple_repeat Simple_repeat 1 20 0 1848 263 33 44 chr3 8555875 8556423 -218968155 + L1MA8 LINE L1 518 2068 -5421 1856 244 31 30 chr3 8556477 8557254 -218967324 + L1MA8 LINE L1 2018 2763 -4802 * 2840 208 48 37 chr3 8557246 8557435 -218967143 + L1MA8 LINE L1 3636 3821 -3744 2621 163 45 60 chr3 8557435 8558056 -218966522 + LTR9 LTR ERV1 1 612 0 2840 208 48 37 chr3 8558056 8558696 -218965882 + L1MA8 LINE L1 3821 4474 -3091 3320 174 17 8 chr3 8558699 8559298 -218965280 - MER50 LTR ERV1 -20 714 111 960 187 38 8 chr3 8559309 8559571 -218965007 - L1 LINE L1 -2813 3333 3064 317 238 0 40 chr3 8559572 8559673 -218964905 + MER50 LTR ERV1 1 97 -637 10123 173 24 27 chr3 8559682 8562747 -218961831 + L1MA8 LINE L1 4657 7709 -1 268 219 0 184 chr3 8562860 8562974 -218961604 + MER63 DNA MER1_type 2 720 -342 617 234 83 5 chr3 8563036 8563228 -218961350 + MER63 DNA MER1_type 836 1042 -18 912 306 62 12 chr3 8563228 8563646 -218960932 - LTR16B LTR ERVL -23 441 3 1955 185 55 47 chr3 8563906 8564328 -218960250 - MSTB LTR MaLR 0 426 2 938 279 20 8 chr3 8564922 8565173 -218959405 + MIR SINE MIR 1 254 -8 273 57 0 0 chr3 8565174 8565209 -218959369 + (CAT)n Simple_repeat Simple_repeat 1 35 0 222 329 24 24 chr3 8566472 8566554 -218958024 + MIR SINE MIR 11 92 -170 246 216 196 41 chr3 8567141 8567238 -218957340 - MLT1K LTR MaLR -326 262 151 23 0 0 0 chr3 8567992 8568015 -218956563 + AT_rich Low_complexity Low_complexity 1 23 0 240 344 96 24 chr3 8569329 8569454 -218955124 + MER5A DNA MER1_type 34 167 -22 494 299 123 25 chr3 8570140 8570668 -218953910 + HAL1 LINE L1 735 1314 -1193 1139 292 73 41 chr3 8570847 8571669 -218952909 + HAL1 LINE L1 1627 2474 -33 2289 214 49 43 chr3 8572278 8572833 -218951745 - MER74A LTR ERVL 0 558 1 288 303 115 8 chr3 8573304 8573426 -218951152 - MER117 DNA MER1_type -29 168 34 249 336 79 58 chr3 8573474 8573715 -218950863 - L2 LINE L2 -202 3070 2825 371 240 41 18 chr3 8573724 8573895 -218950683 + (TA)n Simple_repeat Simple_repeat 1 175 0 27 73 0 0 chr3 8573900 8573955 -218950623 + AT_rich Low_complexity Low_complexity 1 55 0 566 289 27 0 chr3 8574008 8574157 -218950421 - MIR SINE MIR -108 154 2 350 300 64 27 chr3 8575478 8575588 -218948990 + L2 LINE L2 3139 3252 -20 200 182 0 0 chr3 8575806 8575839 -218948739 + (CAAAG)n Simple_repeat Simple_repeat 4 36 0 386 167 77 13 chr3 8576047 8576125 -218948453 - LTR54 LTR ERV1 -427 83 1 658 235 109 53 chr3 8576363 8576418 -218948160 + MER5C DNA MER1_type 6 56 -268 5393 48 31 3 chr3 8576418 8577119 -218947459 + LTR30 LTR ERV1 1 721 -1 658 235 109 53 chr3 8577119 8577365 -218947213 + MER5C DNA MER1_type 56 324 0 248 0 31 0 chr3 8577417 8577449 -218947129 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 2100 79 0 0 chr3 8577785 8578092 -218946486 - AluY SINE Alu 0 307 1 265 341 53 8 chr3 8578389 8578521 -218946057 - MIR SINE MIR -6 256 119 25 65 0 0 chr3 8578774 8578820 -218945758 + AT_rich Low_complexity Low_complexity 1 46 0 595 213 0 31 chr3 8578820 8578947 -218945631 - AluJb SINE Alu -189 123 1 964 246 5 5 chr3 8578949 8579160 -218945418 - MER58A DNA MER1_type -10 214 4 1295 153 60 0 chr3 8581079 8581294 -218943284 + MER30 DNA MER1_type 3 230 0 287 395 0 0 chr3 8581308 8581442 -218943136 + MIR SINE MIR 31 164 -98 246 243 90 54 chr3 8581941 8582052 -218942526 - MLT1J2 LTR MaLR -302 148 34 761 163 0 0 chr3 8582101 8582224 -218942354 + FLAM_C SINE Alu 1 123 -20 903 229 25 4 chr3 8583055 8583295 -218941283 - L1MA4 LINE L1 -5 6295 6051 198 338 38 0 chr3 8583351 8583431 -218941147 + L2 LINE L2 3231 3313 0 709 260 105 47 chr3 8583545 8583841 -218940737 - MLT1I LTR MaLR -95 314 2 242 262 0 39 chr3 8584503 8584606 -218939972 + CT-rich Low_complexity Low_complexity 3 101 0 188 282 39 64 chr3 8584646 8584724 -218939854 - L2 LINE L2 -19 3294 3219 280 336 69 30 chr3 8585249 8585380 -218939198 - L2 LINE L2 0 3272 3137 1454 141 0 4 chr3 8585595 8585836 -218938742 - L1MA4 LINE L1 -5 6295 6056 1018 276 22 63 chr3 8585939 8586065 -218938513 - L1ME3A LINE L1 -5 6165 6035 2311 41 7 3 chr3 8586065 8586357 -218938221 + AluY SINE Alu 1 293 -18 1018 276 22 63 chr3 8586357 8586675 -218937903 - L1ME3A LINE L1 -135 6035 5739 368 232 108 77 chr3 8586707 8586966 -218937612 - MER113 DNA MER1_type? -236 285 19 283 306 194 11 chr3 8587444 8587528 -218937050 - MIR SINE MIR -18 244 177 1373 207 107 52 chr3 8587528 8588007 -218936571 + MLT1D LTR MaLR 1 505 0 283 306 194 11 chr3 8588007 8588108 -218936470 - MIR SINE MIR -85 177 25 488 264 54 86 chr3 8588319 8588633 -218935945 - MLT1K LTR MaLR -24 564 261 304 304 0 49 chr3 8589748 8589850 -218934728 - MIR3 SINE MIR -45 163 67 391 336 17 0 chr3 8589946 8590065 -218934513 + L2 LINE L2 3184 3304 -9 438 324 105 5 chr3 8591262 8591481 -218933097 + MIR SINE MIR 16 256 -6 295 309 9 45 chr3 8592149 8592259 -218932319 - L2 LINE L2 -5 3308 3203 * 694 290 42 9 chr3 8592238 8592455 -218932123 - MIR SINE MIR -2 260 37 209 336 112 14 chr3 8592715 8592858 -218931720 + MIR SINE MIR 100 256 -6 21 36 0 0 chr3 8594680 8594708 -218929870 + AT_rich Low_complexity Low_complexity 1 28 0 2605 39 0 3 chr3 8594800 8595105 -218929473 + AluY SINE Alu 1 304 -7 327 49 0 0 chr3 8595597 8595638 -218928940 + (TG)n Simple_repeat Simple_repeat 2 42 0 1071 207 9 26 chr3 8596272 8596499 -218928079 + MER58A DNA MER1_type 1 223 -1 216 291 13 25 chr3 8596961 8597040 -218927538 + MIR3 SINE MIR 122 199 -9 818 201 4 107 chr3 8598205 8598449 -218926129 + MER20 DNA MER1_type 1 219 0 332 268 108 56 chr3 8599746 8599910 -218924668 - MIR3 SINE MIR -15 193 20 395 173 12 0 chr3 8599978 8600059 -218924519 + MER53 DNA DNA 101 182 -7 489 223 236 0 chr3 8600874 8601031 -218923547 + MIR SINE MIR 14 207 -55 2319 83 0 10 chr3 8601332 8601632 -218922946 + AluSc SINE Alu 1 297 -12 261 329 12 0 chr3 8601641 8601726 -218922852 + L2 LINE L2 3182 3267 -5 1041 256 78 43 chr3 8602853 8603224 -218921354 + MLT1I LTR MaLR 26 409 0 249 384 0 0 chr3 8603938 8604037 -218920541 + MIR SINE MIR 52 150 -112 191 349 39 29 chr3 8605300 8605410 -218919168 + MIR SINE MIR 16 127 -81 998 217 109 29 chr3 8605476 8605789 -218918789 - MER58B DNA MER1_type -3 338 1 398 284 71 13 chr3 8605819 8605974 -218918604 + MLT1J2 LTR MaLR 287 450 0 285 338 40 15 chr3 8606850 8607046 -218917532 + MIR SINE MIR 7 206 -56 272 155 14 0 chr3 8607173 8607244 -218917334 + CT-rich Low_complexity Low_complexity 1 72 0 375 73 0 0 chr3 8607248 8607303 -218917275 + (CA)n Simple_repeat Simple_repeat 2 56 0 2390 257 51 16 chr3 8608251 8609001 -218915577 + MER20B DNA MER1_type 8 783 0 425 367 87 31 chr3 8609257 8609546 -218915032 - L3 LINE CR1 -7 1570 1266 376 374 92 18 chr3 8610049 8610439 -218914139 + L2 LINE L2 2892 3310 -3 184 291 255 7 chr3 8610528 8610669 -218913909 - L3 LINE CR1 -330 1247 1072 7651 23 0 4 chr3 8610824 8611850 -218912728 - L1PA4 LINE L1 -2 6153 5128 234 333 0 0 chr3 8612454 8612520 -218912058 - MER117 DNA MER1_type -8 189 124 272 326 109 42 chr3 8613588 8613781 -218910797 - MIR SINE MIR -14 248 43 264 380 78 14 chr3 8614040 8614182 -218910396 - L2 LINE L2 -5 3267 3117 1027 81 5 38 chr3 8614735 8614741 -218909837 + (TTTC)n Simple_repeat Simple_repeat 1 185 0 1027 81 5 38 chr3 8614741 8614927 -218909651 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1909 164 10 6 chr3 8615334 8615645 -218908933 + AluSx SINE Alu 1 312 0 394 195 46 0 chr3 8615721 8615808 -218908770 - MLT1H LTR MaLR -1 548 458 687 282 29 31 chr3 8615885 8616169 -218908409 - MLT1H LTR MaLR -222 327 1 290 163 24 171 chr3 8617215 8617338 -218907240 - L2 LINE L2 -5 3308 3204 296 53 0 0 chr3 8617992 8618030 -218906548 + U3 snRNA snRNA 1 38 -179 537 308 51 40 chr3 8618205 8618458 -218906120 - MIR SINE MIR -5 257 2 225 179 0 89 chr3 8618523 8618579 -218905999 + MIR SINE MIR 103 153 -109 210 71 0 0 chr3 8618971 8618999 -218905579 + (TG)n Simple_repeat Simple_repeat 1 28 0 800 134 12 18 chr3 8619065 8619229 -218905349 + CT-rich Low_complexity Low_complexity 4 166 0 1544 169 19 8 chr3 8619233 8619493 -218905085 - AluJb SINE Alu -38 274 12 911 288 58 27 chr3 8619892 8620184 -218904394 + L3 LINE CR1 1166 1466 -111 566 335 162 34 chr3 8620445 8620511 -218904067 + L2 LINE L2 2054 2110 -1204 1847 187 12 0 chr3 8620511 8620854 -218903724 - MER7A DNA MER2_type -1 345 1 566 335 162 34 chr3 8620854 8621342 -218903236 + L2 LINE L2 2110 2679 -635 223 379 92 15 chr3 8621467 8621856 -218902722 + L2 LINE L2 2687 3142 -171 359 322 94 35 chr3 8622022 8622224 -218902354 + MIR SINE MIR 13 226 -36 349 294 22 0 chr3 8622396 8622488 -218902090 + L1M4 LINE L1 707 800 -5742 4986 227 81 53 chr3 8622887 8624537 -218900041 + L1MB7 LINE L1 -248 1447 -4833 731 250 66 19 chr3 8624561 8624796 -218899782 + L1MB7 LINE L1 1594 1813 -4571 4284 222 42 11 chr3 8624888 8625933 -218898645 + L1MB7 LINE L1 4387 5519 -901 2529 145 33 9 chr3 8625933 8626354 -218898224 - Tigger2a DNA MER2_type -3 431 1 4284 222 42 11 chr3 8626354 8627155 -218897423 + L1MB7 LINE L1 5519 6293 -127 572 270 104 26 chr3 8627592 8627822 -218896756 - MLT1L LTR MaLR 0 615 368 426 20 0 0 chr3 8627979 8628030 -218896548 + (TG)n Simple_repeat Simple_repeat 2 52 0 219 273 0 0 chr3 8629814 8629869 -218894709 + (TA)n Simple_repeat Simple_repeat 1 55 0 1476 211 19 14 chr3 8629931 8630296 -218894282 + L1MB8 LINE L1 5811 6177 -1 252 0 0 0 chr3 8631098 8631126 -218893452 + (T)n Simple_repeat Simple_repeat 1 28 0 331 332 109 31 chr3 8631145 8631338 -218893240 - MER102b DNA MER1_type -6 335 128 234 311 133 0 chr3 8632010 8632100 -218892478 - MIR3 SINE MIR -93 115 14 3800 117 21 54 chr3 8635604 8636305 -218888273 + L1MA5A LINE L1 5619 6296 -1 4443 80 173 49 chr3 8636474 8637209 -218887369 - LTR12 LTR ERV1 0 826 1 442 0 0 33 chr3 8637380 8637440 -218887138 + (TA)n Simple_repeat Simple_repeat 2 59 0 1614 196 0 16 chr3 8637728 8638040 -218886538 + AluJo SINE Alu 1 307 -5 602 131 0 0 chr3 8638191 8638275 -218886303 - LTR12 LTR ERV1 -151 563 480 313 297 17 0 chr3 8638275 8638393 -218886185 - LTR30 LTR ERV1 -79 643 524 850 57 205 0 chr3 8638393 8638515 -218886063 - LTR12 LTR ERV1 -456 258 112 329 299 18 18 chr3 8638515 8638719 -218885859 + (TA)n Simple_repeat Simple_repeat 1 204 0 4392 32 2 2 chr3 8638815 8639310 -218885268 - SVA Other Other -17 1369 875 575 255 134 89 chr3 8639321 8639574 -218885004 + L1MC5 LINE L1 6711 6951 -1010 360 0 0 0 chr3 8639574 8639614 -218884964 + (TG)n Simple_repeat Simple_repeat 1 40 0 575 255 134 89 chr3 8639614 8639866 -218884712 + L1MC5 LINE L1 6951 7239 -722 2366 172 73 36 chr3 8639914 8640501 -218884077 - L1MB7 LINE L1 -20 6164 5556 741 241 42 31 chr3 8640489 8640750 -218883828 + L1MC5 LINE L1 7268 7531 -430 * 1648 141 84 0 chr3 8640755 8640944 -218883634 - AluSx SINE Alu 0 333 110 216 0 0 0 chr3 8640944 8640968 -218883610 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1648 141 84 0 chr3 8640968 8641089 -218883489 - AluSx SINE Alu -223 110 1 2644 153 47 10 chr3 8641404 8641889 -218882689 - L1MC1 LINE L1 -9 6324 5822 23 33 0 0 chr3 8642143 8642173 -218882405 + AT_rich Low_complexity Low_complexity 1 30 0 276 316 153 20 chr3 8642940 8643241 -218881337 + MLT1H LTR MaLR 22 362 -187 249 229 0 0 chr3 8643289 8643337 -218881241 + MLT1H LTR MaLR 501 548 -1 253 369 34 45 chr3 8643359 8643535 -218881043 + L2 LINE L2 2931 3104 -168 210 215 141 89 chr3 8643667 8643802 -218880776 + MIR SINE MIR 121 262 0 895 225 63 106 chr3 8643859 8644380 -218880198 - L1MC5 LINE L1 -838 7123 6625 3712 180 12 8 chr3 8644381 8645114 -218879464 - L1MA8 LINE L1 -3 6288 5553 1085 207 152 30 chr3 8645479 8645953 -218878625 - L1MC5 LINE L1 -302 7659 7128 266 167 167 67 chr3 8645978 8646068 -218878510 + L1MC5 LINE L1 6930 7028 -933 182 307 132 44 chr3 8646299 8646413 -218878165 + L2 LINE L2 3172 3295 -18 252 130 0 0 chr3 8647253 8647299 -218877279 + (TATG)n Simple_repeat Simple_repeat 1 46 0 293 306 131 45 chr3 8649124 8649323 -218875255 + MIR SINE MIR 2 217 -45 295 150 340 0 chr3 8649890 8649990 -218874588 + MER103 DNA DNA 18 151 -15 513 267 22 15 chr3 8650010 8650145 -218874433 - MIR SINE MIR -5 257 122 306 68 0 0 chr3 8651300 8651344 -218873234 - L1PA8 LINE L1 -4 6168 6125 306 167 22 11 chr3 8652208 8652298 -218872280 + (TA)n Simple_repeat Simple_repeat 2 92 0 3598 181 16 68 chr3 8654105 8654954 -218869624 + Tigger6a DNA MER2_type 1 805 -278 3374 191 37 4 chr3 8654970 8655678 -218868900 - L1MD1 LINE L1 -7 6629 5899 3027 254 24 41 chr3 8655685 8656340 -218868238 - L1MD1 LINE L1 -1602 4938 4312 5445 18 0 2 chr3 8656340 8656963 -218867615 - L1PA3 LINE L1 0 6155 5534 3027 254 24 41 chr3 8656963 8657545 -218867033 - L1MD1 LINE L1 -2228 4312 3722 * 5805 218 63 31 chr3 8657540 8659758 -218864820 - L1MD1 LINE L1 -4009 2531 18 1065 177 55 19 chr3 8659761 8660032 -218864546 + Tigger6a DNA MER2_type 803 1083 0 196 368 58 0 chr3 8660115 8660202 -218864376 - L2 LINE L2 -33 3280 3189 286 321 18 0 chr3 8660462 8660571 -218864007 - MIR SINE MIR -58 204 94 362 365 207 22 chr3 8660965 8661327 -218863251 + L2 LINE L2 2836 3264 -8 373 288 54 9 chr3 8662896 8663007 -218861571 + L2 LINE L2 3193 3308 -5 206 62 31 0 chr3 8663010 8663042 -218861536 + (TGGA)n Simple_repeat Simple_repeat 4 36 0 299 318 80 66 chr3 8663325 8663674 -218860904 + L3 LINE CR1 1199 1552 -25 300 91 0 0 chr3 8664137 8664181 -218860397 + (TC)n Simple_repeat Simple_repeat 1 44 0 243 306 0 14 chr3 8664181 8664253 -218860325 + MIR SINE MIR 189 259 -3 299 322 43 9 chr3 8665160 8665275 -218859303 + MIR3 SINE MIR 82 200 -8 225 94 0 0 chr3 8666608 8666640 -218857938 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 432 151 226 0 chr3 8666640 8666746 -218857832 - L1MB4 LINE L1 -95 6085 5956 192 443 0 0 chr3 8666912 8667000 -218857578 + L2 LINE L2 3162 3249 -23 24 0 0 0 chr3 8668179 8668203 -218856375 + AT_rich Low_complexity Low_complexity 1 24 0 216 267 0 0 chr3 8668570 8668615 -218855963 + MIR SINE MIR 29 73 -135 1586 241 28 19 chr3 8669540 8669972 -218854606 - MER110 LTR ERV1 -4 487 52 860 181 7 7 chr3 8670796 8670945 -218853633 - FRAM SINE Alu -30 146 1 539 282 6 28 chr3 8671889 8672070 -218852508 - MER5B DNA MER1_type -1 177 1 360 320 53 8 chr3 8672240 8672374 -218852204 - MIR SINE MIR -66 142 34 2050 139 53 11 chr3 8674055 8674415 -218850163 + THE1C LTR MaLR 1 375 0 203 387 43 0 chr3 8675726 8675819 -218848759 + MIR3 SINE MIR 63 159 -49 309 341 73 8 chr3 8675903 8676071 -218848507 - MIR SINE MIR -61 147 10 3327 110 47 4 chr3 8676438 8676928 -218847650 - MER9 LTR ERVK 0 511 1 680 314 65 14 chr3 8676935 8677225 -218847353 - MLT1K LTR MaLR -15 573 269 2208 123 16 21 chr3 8677961 8678334 -218846244 + THE1C LTR MaLR 1 371 -4 212 304 14 0 chr3 8678363 8678432 -218846146 - L2 LINE L2 -1 3271 3202 509 307 46 55 chr3 8679011 8679229 -218845349 - MIR SINE MIR -29 233 18 1650 193 24 24 chr3 8679666 8680075 -218844503 + L1MA10 LINE L1 5924 6332 -2 1857 86 0 0 chr3 8680107 8680365 -218844213 + AluY SINE Alu 50 307 0 1036 198 231 41 chr3 8680918 8681307 -218843271 + MLT2B1 LTR ERVL 6 534 -20 189 0 0 0 chr3 8681354 8681375 -218843203 + (TG)n Simple_repeat Simple_repeat 2 22 0 233 343 0 27 chr3 8682566 8682639 -218841939 + MIR SINE MIR 33 103 -105 180 0 0 0 chr3 8683208 8683228 -218841350 + (T)n Simple_repeat Simple_repeat 1 20 0 276 179 119 15 chr3 8683349 8683416 -218841162 + MLT1I LTR MaLR 336 409 0 230 282 0 137 chr3 8683739 8683863 -218840715 - MER5B DNA MER1_type -3 175 69 584 292 12 6 chr3 8683901 8684069 -218840509 + MIR SINE MIR 93 261 -1 187 270 43 61 chr3 8684174 8684289 -218840289 + L2 LINE L2 3184 3296 -17 4306 36 0 2 chr3 8684976 8685498 -218839080 - L1PA4 LINE L1 -6 6149 5629 10891 31 1 1 chr3 8685498 8686821 -218837757 + L1P LINE L1 4035 5358 -788 540 226 123 7 chr3 8687170 8687316 -218837262 - MER58B DNA MER1_type -4 337 175 25 31 0 0 chr3 8687925 8687957 -218836621 + AT_rich Low_complexity Low_complexity 1 32 0 366 226 0 43 chr3 8688106 8688199 -218836379 - L1MC4 LINE L1 -1340 6702 6614 530 303 142 43 chr3 8689876 8690597 -218833981 - L2 LINE L2 -111 3202 2360 675 296 186 31 chr3 8691422 8691841 -218832737 - MLT1G1 LTR MaLR -36 559 76 1629 148 21 4 chr3 8691914 8692328 -218832250 + L1PA16 LINE L1 5117 5539 -627 1793 133 81 27 chr3 8692328 8692660 -218831918 + L1PA16 LINE L1 5807 6156 -10 269 377 15 8 chr3 8693723 8693853 -218830725 + L2 LINE L2 2238 2368 -946 1027 277 65 34 chr3 8693888 8694332 -218830246 + MLT1C LTR MaLR 10 467 0 451 355 77 31 chr3 8694386 8694738 -218829840 + L2 LINE L2 2480 2847 -467 4988 204 43 19 chr3 8694741 8696741 -218827837 - L1MC2 LINE L1 -10 6334 4295 610 162 8 0 chr3 8696845 8696962 -218827616 - L1MB3 LINE L1 -19 6164 6047 2573 52 0 0 chr3 8696963 8697272 -218827306 - AluY SINE Alu -2 309 1 2027 182 84 25 chr3 8697281 8697759 -218826819 - L1MB3 LINE L1 -1 6182 5677 188 314 20 0 chr3 8698135 8698186 -218826392 + L2 LINE L2 2541 2592 -722 554 154 103 45 chr3 8698356 8698462 -218826116 - L1MCb LINE L1 -4103 2461 2342 1002 211 63 89 chr3 8698462 8698845 -218825733 + MLT1A2 LTR MaLR 1 373 -1 554 154 103 45 chr3 8698845 8698894 -218825684 - L1MCb LINE L1 -4222 2342 2297 5164 179 31 10 chr3 8698904 8700227 -218824351 - L1PA16 LINE L1 0 6166 4810 2307 155 22 89 chr3 8700229 8700821 -218823757 + L1PA16 LINE L1 4265 4816 -1330 * 2832 216 101 56 chr3 8700811 8701001 -218823577 - L1MCb LINE L1 -4260 2304 2124 1860 136 25 0 chr3 8701001 8701309 -218823269 + AluSq SINE Alu 1 315 0 2832 216 101 56 chr3 8701309 8701543 -218823035 - L1MCb LINE L1 -4440 2124 1902 637 54 0 21 chr3 8701543 8701636 -218822942 - L1PA8 LINE L1 0 6172 6082 2832 216 101 56 chr3 8701636 8703337 -218821241 - L1MCb LINE L1 -4662 1902 3 223 345 0 62 chr3 8703390 8703478 -218821100 + L2 LINE L2 2868 2949 -364 3199 138 53 0 chr3 8703478 8704029 -218820549 + LTR19B LTR ERV1 1 580 0 223 345 0 62 chr3 8704029 8704053 -218820525 + L2 LINE L2 2949 2973 -340 184 295 156 8 chr3 8704168 8704290 -218820288 + L2 LINE L2 3144 3283 -30 27 29 0 0 chr3 8705846 8705880 -218818698 + AT_rich Low_complexity Low_complexity 1 34 0 195 129 0 0 chr3 8706400 8706431 -218818147 + (CATA)n Simple_repeat Simple_repeat 4 34 0 1635 57 0 0 chr3 8706503 8706696 -218817882 + AluY SINE Alu 110 302 -9 1057 224 23 0 chr3 8707017 8707236 -218817342 - MER58A DNA MER1_type 0 224 1 638 214 53 78 chr3 8707246 8707452 -218817126 - MER3 DNA MER1_type -1 208 8 281 224 0 53 chr3 8707660 8707736 -218816842 + MIR SINE MIR 112 183 -79 470 362 25 5 chr3 8707836 8708035 -218816543 + MIR SINE MIR 42 244 -18 21 0 0 0 chr3 8708150 8708171 -218816407 + AT_rich Low_complexity Low_complexity 1 21 0 270 267 22 44 chr3 8708634 8708724 -218815854 + MER81 DNA DNA 27 114 0 1552 175 22 56 chr3 8708889 8709209 -218815369 + AluJo SINE Alu 1 309 -3 268 163 82 0 chr3 8709647 8709696 -218814882 - MER5B DNA MER1_type -3 175 123 2575 102 66 31 chr3 8709704 8709871 -218814707 + L1PA10 LINE L1 5730 5890 -278 2243 114 0 3 chr3 8709871 8710177 -218814401 + AluSg SINE Alu 1 305 -5 2575 102 66 31 chr3 8710177 8710432 -218814146 + L1PA10 LINE L1 5890 6167 -1 331 357 16 8 chr3 8710514 8710643 -218813935 - MER5B DNA MER1_type -48 130 1 264 30 0 0 chr3 8710675 8710708 -218813870 + (CA)n Simple_repeat Simple_repeat 1 33 0 226 275 116 0 chr3 8710716 8710785 -218813793 + MIR SINE MIR 39 115 -93 1837 151 48 12 chr3 8712276 8712607 -218811971 + MER2 DNA MER2_type 2 344 0 543 194 73 0 chr3 8714867 8714991 -218809587 - L1MA9 LINE L1 0 6312 6180 2293 102 0 0 chr3 8715017 8715320 -218809258 + AluSc SINE Alu 1 303 -6 263 317 41 8 chr3 8715348 8715471 -218809107 + MIR SINE MIR 136 262 0 2123 70 0 3 chr3 8716336 8716623 -218807955 - L1PA5 LINE L1 0 6154 5869 576 221 8 31 chr3 8717809 8717936 -218806642 + MER21B LTR ERV1 343 466 -397 29 28 0 0 chr3 8718486 8718522 -218806056 + AT_rich Low_complexity Low_complexity 1 36 0 2399 253 42 39 chr3 8719712 8721544 -218803034 + L1MCc LINE L1 807 2906 -4035 2240 98 3 0 chr3 8721544 8721849 -218802729 - AluSp SINE Alu -5 308 3 2399 253 42 39 chr3 8721849 8722885 -218801693 + L1MCc LINE L1 2906 3937 -3004 2264 97 20 0 chr3 8722891 8723189 -218801389 + AluSx SINE Alu 3 306 -6 3486 159 65 11 chr3 8723191 8723853 -218800725 + L1MC1 LINE L1 5635 6332 -1 374 341 33 76 chr3 8723887 8724007 -218800571 + L2 LINE L2 2876 2985 -328 2560 45 0 3 chr3 8724007 8724316 -218800262 - AluY SINE Alu -3 308 1 374 341 33 76 chr3 8724316 8724406 -218800172 + L2 LINE L2 2985 3077 -236 23 0 0 0 chr3 8724539 8724562 -218800016 + AT_rich Low_complexity Low_complexity 1 23 0 186 43 0 0 chr3 8724563 8724586 -218799992 + (T)n Simple_repeat Simple_repeat 1 23 0 801 192 7 0 chr3 8724592 8724738 -218799840 + L1ME2 LINE L1 5452 5598 -735 647 165 0 0 chr3 8724750 8724871 -218799707 - L1MC/D LINE L1 -2542 5453 5333 369 262 197 35 chr3 8726056 8726514 -218798064 - MLT1H1 LTR MaLR -6 588 1 22 0 0 0 chr3 8726861 8726883 -218797695 + AT_rich Low_complexity Low_complexity 1 22 0 1901 64 0 49 chr3 8726935 8727199 -218797379 - AluY SINE Alu -13 298 48 515 253 123 30 chr3 8727370 8727639 -218796939 + MER46C DNA MER2_type 1 294 -44 243 227 149 58 chr3 8727671 8727825 -218796753 - MIR SINE MIR 0 262 95 26 0 0 0 chr3 8729136 8729162 -218795416 + AT_rich Low_complexity Low_complexity 1 26 0 3535 225 45 24 chr3 8729774 8730680 -218793898 - MER45B DNA AcHobo -27 1013 89 430 314 31 63 chr3 8732336 8732559 -218792019 - MIR SINE MIR -31 231 16 270 253 21 84 chr3 8733327 8733422 -218791156 - L2 LINE L2 -2 3311 3223 773 204 25 6 chr3 8733461 8733618 -218790960 + MER97c DNA MER1_type? 20 179 -911 976 261 65 36 chr3 8733656 8734104 -218790474 + L1ME2 LINE L1 5685 6145 -19 438 108 0 0 chr3 8734362 8734427 -218790151 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 2350 105 0 0 chr3 8734590 8734895 -218789683 - AluSc SINE Alu -4 305 1 180 0 0 0 chr3 8735622 8735642 -218788936 + (A)n Simple_repeat Simple_repeat 1 20 0 2277 90 3 3 chr3 8735733 8736033 -218788545 - AluSx SINE Alu -2 310 11 22 35 0 0 chr3 8736301 8736330 -218788248 + AT_rich Low_complexity Low_complexity 1 29 0 1593 213 101 0 chr3 8736457 8736823 -218787755 + MLT1A1-int LTR MaLR 1333 1735 0 233 212 197 0 chr3 8736823 8736889 -218787689 + MLT1A1 LTR MaLR 1 79 -295 340 309 0 0 chr3 8736929 8737026 -218787552 + MLT1A1 LTR MaLR 60 156 -218 756 184 21 154 chr3 8737057 8737291 -218787287 + MLT1A1 LTR MaLR 162 365 0 407 335 6 29 chr3 8737335 8737505 -218787073 - MER5A DNA MER1_type -23 166 1 442 327 17 14 chr3 8737556 8737742 -218786836 + MIR SINE MIR 25 209 -53 293 331 182 7 chr3 8737914 8738068 -218786510 - MIR SINE MIR -15 247 67 528 284 91 33 chr3 8739174 8739417 -218785161 - MIR SINE MIR -4 258 2 210 274 19 57 chr3 8740112 8740218 -218784360 - MIR SINE MIR -54 208 107 216 224 17 17 chr3 8740744 8740802 -218783776 + CT-rich Low_complexity Low_complexity 2 59 0 1654 142 54 85 chr3 8741067 8741454 -218783124 - THE1C LTR MaLR 0 375 1 1926 175 0 0 chr3 8741850 8742158 -218782420 - AluSx SINE Alu -4 308 1 2201 105 0 32 chr3 8742578 8742893 -218781685 + AluSg1 SINE Alu 1 305 -4 1488 214 61 12 chr3 8743937 8744279 -218780299 + MLT1A1 LTR MaLR 1 359 -6 679 273 16 0 chr3 8744840 8745023 -218779555 + MER58A DNA MER1_type 1 186 -38 774 201 17 6 chr3 8745038 8745217 -218779361 - L1MD1 LINE L1 -8 6234 6054 2657 188 35 25 chr3 8745228 8745320 -218779258 - L1MD1 LINE L1 -252 5990 5900 2412 123 17 3 chr3 8745320 8745679 -218778899 + THE1B LTR MaLR 1 364 0 2657 188 35 25 chr3 8745679 8746252 -218778326 - L1MD1 LINE L1 -342 5900 5319 1905 178 73 8 chr3 8746451 8746821 -218777757 + MSTD LTR MaLR 1 394 -2 4989 262 68 38 chr3 8746823 8748508 -218776070 + MSTD-int LTR MaLR 1 1735 0 1863 176 92 0 chr3 8748508 8748867 -218775711 + MSTD LTR MaLR 1 392 -4 22 56 0 0 chr3 8749210 8749246 -218775332 + AT_rich Low_complexity Low_complexity 1 36 0 461 281 103 50 chr3 8749944 8750186 -218774392 + MIR SINE MIR 5 259 -3 343 152 38 13 chr3 8750370 8750449 -218774129 + LTR56 LTR ERV1 349 429 -16 264 154 0 0 chr3 8751291 8751343 -218773235 + (TG)n Simple_repeat Simple_repeat 1 52 0 316 360 71 22 chr3 8751370 8751595 -218772983 - L3 LINE CR1 -159 1418 1183 425 314 41 41 chr3 8751751 8751971 -218772607 - MIR SINE MIR -37 225 6 327 49 0 0 chr3 8752412 8752453 -218772125 + (CA)n Simple_repeat Simple_repeat 2 42 0 185 0 40 0 chr3 8752521 8752546 -218772032 + (TTA)n Simple_repeat Simple_repeat 2 27 0 674 198 152 5 chr3 8752546 8752743 -218771835 - MER5C DNA MER1_type -47 277 52 1744 186 3 0 chr3 8753049 8753345 -218771233 - AluJo SINE Alu -11 301 5 301 268 86 86 chr3 8753794 8754003 -218770575 - L1ME3A LINE L1 -283 5887 5679 299 292 64 21 chr3 8754116 8754349 -218770229 - L1ME3A LINE L1 -651 5513 5271 325 284 35 103 chr3 8755878 8756110 -218768468 - L3 LINE CR1 -518 1059 844 189 363 55 11 chr3 8756273 8756364 -218768214 - L3 LINE CR1 -11 1566 1472 198 264 114 36 chr3 8756450 8756590 -218767988 + MIR SINE MIR 46 196 -66 2024 108 0 81 chr3 8756820 8757154 -218767424 + AluSx SINE Alu 1 307 -5 407 250 167 14 chr3 8757669 8757813 -218766765 + MER5A DNA MER1_type 4 169 -20 200 375 0 0 chr3 8757839 8757911 -218766667 - MER5B DNA MER1_type -60 118 47 290 388 50 0 chr3 8758765 8758925 -218765653 - MIR3 SINE MIR -1 207 40 210 356 46 11 chr3 8758932 8759019 -218765559 + L2 LINE L2 2443 2532 -782 350 235 118 78 chr3 8759051 8759255 -218765323 + L2 LINE L2 2833 3044 -228 414 200 12 0 chr3 8759395 8759480 -218765098 + MER94 DNA DNA 1 86 -48 836 144 51 20 chr3 8759711 8759906 -218764672 + L1MA5 LINE L1 6100 6300 0 48 18 0 0 chr3 8759909 8759964 -218764614 + AT_rich Low_complexity Low_complexity 1 55 0 279 230 23 46 chr3 8760660 8760747 -218763831 + MER112 DNA MER1_type 1 85 -175 189 250 0 0 chr3 8760749 8760809 -218763769 + (CATA)n Simple_repeat Simple_repeat 1 60 0 192 355 47 12 chr3 8761002 8761174 -218763404 - L2 LINE L2 -1108 2206 2029 225 287 126 35 chr3 8761245 8761332 -218763246 + L2 LINE L2 3193 3287 -26 1827 223 122 56 chr3 8761535 8762270 -218762308 + LTR50 LTR ERVL 10 793 -2 4350 86 12 80 chr3 8762443 8763093 -218761485 + L1PB1 LINE L1 5193 5776 -375 189 0 0 0 chr3 8763093 8763114 -218761464 + (CA)n Simple_repeat Simple_repeat 1 21 0 4350 86 12 80 chr3 8763114 8763312 -218761266 + L1PB1 LINE L1 5776 5986 -165 753 293 26 7 chr3 8763320 8763627 -218760951 + L1M4 LINE L1 2272 2584 -3562 5023 144 17 5 chr3 8763680 8764674 -218759904 + L1PA16 LINE L1 5128 6133 -33 3262 138 24 29 chr3 8764814 8765403 -218759175 - LTR60 LTR ERV1 0 586 1 248 184 126 0 chr3 8765465 8765568 -218759010 + HAL1b LINE L1 746 861 -487 2693 16 3 3 chr3 8765797 8766102 -218758476 + AluY SINE Alu 1 305 -6 445 253 123 0 chr3 8766208 8766362 -218758216 + MLT1F1 LTR MaLR 9 181 -386 3080 101 41 0 chr3 8766420 8766855 -218757723 + MLT2A2 LTR ERVL 1 453 0 1116 159 19 9 chr3 8766855 8767069 -218757509 - Tigger1 DNA MER2_type -9 2409 2194 295 296 0 0 chr3 8767109 8767207 -218757371 + L1M4 LINE L1 2592 2689 -3457 462 258 85 25 chr3 8767222 8767657 -218756921 - L1MEc LINE L1 -3923 2473 2013 409 233 85 51 chr3 8767809 8767985 -218756593 - MLT1K LTR MaLR -34 554 373 24 0 0 0 chr3 8768007 8768031 -218756547 + AT_rich Low_complexity Low_complexity 1 24 0 1916 201 25 81 chr3 8768035 8768606 -218755972 - LTR8 LTR ERV1 0 691 153 5132 132 24 5 chr3 8768628 8769818 -218754760 - L1PA16 LINE L1 -11 6155 4981 1683 112 73 0 chr3 8769819 8770105 -218754473 - LTR49 LTR ERV1 -288 307 1 343 250 85 51 chr3 8770387 8770563 -218754015 + MLT1K LTR MaLR 373 554 -34 319 243 29 10 chr3 8772415 8772518 -218752060 + MER103 DNA DNA 55 159 -7 291 316 51 0 chr3 8773213 8773292 -218751286 + MIR SINE MIR 44 126 -82 351 231 51 0 chr3 8773543 8773621 -218750957 - MIR SINE MIR -16 246 165 210 278 122 11 chr3 8774167 8774257 -218750321 - L2 LINE L2 -35 3237 3138 12042 151 35 14 chr3 8774395 8776597 -218747981 + Tigger4(Zombi) DNA MER2_type 1 2248 -483 41771 35 9 3 chr3 8776597 8782712 -218741866 - L1PA3 LINE L1 -5 6150 7 2525 115 33 102 chr3 8782712 8783259 -218741319 + Tigger4(Zombi) DNA MER2_type 2222 2730 -1 331 348 11 50 chr3 8783352 8783548 -218741030 + MIR SINE MIR 1 191 -17 204 125 0 0 chr3 8784305 8784337 -218740241 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1726 217 24 78 chr3 8784657 8785192 -218739386 - MLT2B3 LTR ERVL -48 506 1 1293 158 74 74 chr3 8785402 8785700 -218738878 + AluJb SINE Alu 1 298 -14 2467 86 0 0 chr3 8785792 8786094 -218738484 + AluY SINE Alu 1 302 -9 545 194 37 0 chr3 8786611 8786719 -218737859 - MLT2B3 LTR ERVL -72 482 371 341 82 0 0 chr3 8786791 8786840 -218737738 - MLT2B1 LTR ERVL 0 520 472 207 266 16 16 chr3 8786850 8786914 -218737664 + L2 LINE L2 3246 3309 -4 236 309 53 63 chr3 8787594 8787801 -218736777 - L2 LINE L2 0 3313 3109 362 331 105 6 chr3 8787834 8788015 -218736563 - L2 LINE L2 -358 2956 2758 2550 293 103 115 chr3 8788025 8789131 -218735447 - L2 LINE L2 -840 2474 1356 708 218 51 60 chr3 8789131 8789347 -218735231 - MER58A DNA MER1_type -1 223 10 2550 293 103 115 chr3 8789347 8789389 -218735189 - L2 LINE L2 -1958 1356 1315 1590 213 45 8 chr3 8789389 8789741 -218734837 + MLT1A1 LTR MaLR 1 365 0 2550 293 103 115 chr3 8789741 8790853 -218733725 - L2 LINE L2 -1999 1315 28 301 286 0 0 chr3 8791487 8791571 -218733007 + MER94 DNA DNA 5 88 -46 1139 343 40 17 chr3 8792631 8793205 -218731373 + L1PA16 LINE L1 788 1374 -6200 277 246 127 18 chr3 8793261 8793371 -218731207 + L1PA16 LINE L1 2176 2297 -5277 260 346 0 0 chr3 8793350 8793428 -218731150 + L1PA16 LINE L1 2104 2181 -5400 * 13260 232 29 16 chr3 8794087 8799428 -218725150 + L1PA16 LINE L1 2225 7602 -2 719 296 83 53 chr3 8799525 8799900 -218724678 + MLT1I LTR MaLR 4 389 -20 557 168 16 16 chr3 8799982 8800107 -218724471 + L1MA10 LINE L1 6209 6333 -1 279 0 0 0 chr3 8800471 8800502 -218724076 + (CA)n Simple_repeat Simple_repeat 2 32 0 1992 173 11 6 chr3 8800559 8800912 -218723666 - THE1A LTR MaLR 0 355 1 11089 103 17 2 chr3 8800912 8802468 -218722110 - THE1A-int LTR MaLR 0 1580 2 2184 138 23 6 chr3 8802469 8802818 -218721760 - THE1A LTR MaLR 0 355 1 264 370 55 0 chr3 8803118 8803264 -218721314 - MIR3 SINE MIR -1 207 54 266 215 15 31 chr3 8804431 8804496 -218720082 - L1PB4 LINE L1 -90 6066 6003 27 49 0 0 chr3 8804515 8804556 -218720022 + AT_rich Low_complexity Low_complexity 1 41 0 2427 62 0 10 chr3 8804924 8805233 -218719345 + AluY SINE Alu 1 306 -5 395 261 80 29 chr3 8805912 8806050 -218718528 - L1PB4 LINE L1 0 6156 6012 892 135 10 91 chr3 8806633 8806841 -218717737 - L1MA10 LINE L1 -2 6332 6142 4072 189 52 26 chr3 8806848 8808513 -218716065 - L1MB1 LINE L1 -135 6033 4316 221 130 43 58 chr3 8809158 8809227 -218715351 + (TATAG)n Simple_repeat Simple_repeat 3 70 0 28 29 0 0 chr3 8810450 8810485 -218714093 + AT_rich Low_complexity Low_complexity 1 35 0 196 29 29 29 chr3 8811378 8811412 -218713166 + (TTTTTG)n Simple_repeat Simple_repeat 2 35 0 186 43 0 0 chr3 8811960 8811983 -218712595 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr3 8812018 8812039 -218712539 + AT_rich Low_complexity Low_complexity 1 21 0 24 85 0 0 chr3 8812140 8812199 -218712379 + AT_rich Low_complexity Low_complexity 1 59 0 263 125 42 52 chr3 8812241 8812337 -218712241 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 222 374 53 15 chr3 8812404 8812535 -218712043 + MER5A DNA MER1_type 54 189 0 278 368 114 14 chr3 8812575 8812795 -218711783 + L2 LINE L2 2805 3046 -226 360 326 19 49 chr3 8812814 8813051 -218711527 - MIR SINE MIR 0 262 35 11470 203 55 25 chr3 8813072 8816612 -218707966 + L1PA16 LINE L1 806 4240 -2629 6925 61 26 1 chr3 8816612 8817487 -218707091 - MER11D LTR ERVK 0 897 1 11470 203 55 25 chr3 8817487 8818006 -218706572 + L1PA16 LINE L1 4240 4742 -2127 234 0 0 0 chr3 8818006 8818032 -218706546 + (CA)n Simple_repeat Simple_repeat 1 26 0 11470 203 55 25 chr3 8818032 8819780 -218704798 + L1PA16 LINE L1 4742 6860 -9 21 0 0 0 chr3 8819784 8819805 -218704773 + AT_rich Low_complexity Low_complexity 1 21 0 372 322 11 72 chr3 8821305 8821485 -218703093 + MIR SINE MIR 23 191 -71 254 203 0 38 chr3 8821588 8821667 -218702911 + (CATATA)n Simple_repeat Simple_repeat 2 77 0 1589 237 68 45 chr3 8821823 8822592 -218701986 + Charlie7 DNA MER1_type 1723 2508 -104 1750 211 35 28 chr3 8822836 8823295 -218701283 - MLT1C LTR MaLR 0 467 6 506 241 165 24 chr3 8825484 8825696 -218698882 + MIR SINE MIR 21 262 0 1894 128 10 7 chr3 8825809 8826105 -218698473 - AluSp SINE Alu -16 297 1 21 0 0 0 chr3 8826211 8826232 -218698346 + AT_rich Low_complexity Low_complexity 1 21 0 204 243 0 0 chr3 8826289 8826363 -218698215 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 483 328 102 11 chr3 8827176 8827353 -218697225 + MIR SINE MIR 6 198 -64 4205 45 0 0 chr3 8827470 8828000 -218696578 - L1P LINE L1 -2438 3708 3179 2909 23 0 0 chr3 8827993 8828337 -218696241 + L1P LINE L1 3708 4051 -2095 * 228 65 0 0 chr3 8828331 8828362 -218696216 - L1P LINE L1 -2937 3209 3179 * 1253 21 0 0 chr3 8828359 8828504 -218696074 + L1PA3 LINE L1 3712 3856 -2290 11246 24 6 0 chr3 8828504 8830591 -218693987 + L1PA3 LINE L1 4061 6152 -3 21 0 0 0 chr3 8830591 8830612 -218693966 + AT_rich Low_complexity Low_complexity 1 21 0 292 327 63 25 chr3 8831042 8831201 -218693377 + MIR3 SINE MIR 35 199 -9 2011 118 6 43 chr3 8831311 8831633 -218692945 + AluSg SINE Alu 1 310 0 1939 194 24 5 chr3 8831657 8832034 -218692544 - MER44D DNA MER2_type -166 439 1 344 288 149 40 chr3 8832807 8833029 -218691549 - MIR SINE MIR -13 249 4 2318 64 0 10 chr3 8833216 8833511 -218691067 + AluY SINE Alu 1 292 -19 32 43 0 0 chr3 8834412 8834458 -218690120 + AT_rich Low_complexity Low_complexity 1 46 0 379 342 103 40 chr3 8835122 8835394 -218689184 - L3 LINE CR1 -17 1560 1272 192 308 202 30 chr3 8835904 8836102 -218688476 - L3 LINE CR1 -910 667 436 779 299 33 11 chr3 8836522 8836907 -218687671 + LTR16A LTR ERVL 16 450 0 567 105 0 12 chr3 8837536 8837622 -218686956 - AluSg/x SINE Alu -13 297 213 208 322 98 49 chr3 8837803 8837946 -218686632 + MIR SINE MIR 34 183 -79 29 0 0 0 chr3 8838037 8838066 -218686512 + AT_rich Low_complexity Low_complexity 1 29 0 31 76 0 0 chr3 8839208 8839274 -218685304 + AT_rich Low_complexity Low_complexity 1 66 0 241 111 86 19 chr3 8839286 8839448 -218685130 + (TA)n Simple_repeat Simple_repeat 1 173 0 25 31 0 0 chr3 8839448 8839480 -218685098 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr3 8839570 8839612 -218684966 + AT_rich Low_complexity Low_complexity 1 42 0 2427 122 28 0 chr3 8840148 8840501 -218684077 + THE1B LTR MaLR 1 363 -1 11283 100 4 5 chr3 8840502 8840993 -218683585 + THE1B-int LTR MaLR 1 491 -1089 2170 100 0 28 chr3 8840993 8841313 -218683265 + AluSx SINE Alu 1 311 -1 11283 100 4 5 chr3 8841313 8842402 -218682176 + THE1B-int LTR MaLR 491 1580 0 2166 146 36 14 chr3 8842402 8842758 -218681820 + THE1B LTR MaLR 1 364 0 27 49 0 0 chr3 8842942 8842983 -218681595 + AT_rich Low_complexity Low_complexity 1 41 0 208 139 0 0 chr3 8843506 8843542 -218681036 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 334 409 53 28 chr3 8843606 8844163 -218680415 - L2 LINE L2 -1 3271 2703 684 237 71 62 chr3 8844351 8844562 -218680016 - MER20 DNA MER1_type -5 214 2 473 254 30 45 chr3 8844917 8845051 -218679527 - L2 LINE L2 0 3313 3182 270 403 56 7 chr3 8845046 8845190 -218679388 - MER5A DNA MER1_type -38 151 1 * 299 243 19 0 chr3 8845275 8845363 -218679215 + (TA)n Simple_repeat Simple_repeat 1 93 -12 270 81 0 0 chr3 8845363 8845400 -218679178 + (CA)n Simple_repeat Simple_repeat 2 38 0 299 243 19 0 chr3 8845400 8845414 -218679164 + (TA)n Simple_repeat Simple_repeat 93 105 0 257 289 242 7 chr3 8845931 8846080 -218678498 - MER5A DNA MER1_type 0 189 6 439 231 172 11 chr3 8846224 8846410 -218678168 - L1MC/D LINE L1 -2336 5472 5257 489 264 83 7 chr3 8846680 8846956 -218677622 - MER113 DNA MER1_type? -213 308 12 279 299 0 11 chr3 8847144 8847231 -218677347 + GA-rich Low_complexity Low_complexity 2 87 0 2161 91 31 0 chr3 8847390 8847676 -218676902 - AluSg SINE Alu -15 295 1 468 276 61 33 chr3 8847711 8847892 -218676686 - MIR SINE MIR -61 201 16 21 57 0 0 chr3 8848534 8848569 -218676009 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr3 8848751 8848771 -218675807 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 807 204 65 27 chr3 8848787 8848973 -218675605 - AluJo SINE Alu -78 234 42 276 236 16 49 chr3 8849188 8849311 -218675267 + (TATATG)n Simple_repeat Simple_repeat 2 120 0 223 241 7 51 chr3 8849258 8849395 -218675183 + (TTTA)n Simple_repeat Simple_repeat 4 134 0 * 265 321 71 36 chr3 8849395 8849507 -218675071 - MIR SINE MIR -116 146 31 308 333 84 33 chr3 8849791 8850004 -218674574 - MIR SINE MIR -31 231 8 2373 35 42 0 chr3 8850118 8850405 -218674173 + AluY SINE Alu 1 299 -12 43783 43 7 0 chr3 8850497 8856613 -218667965 + L1PA3 LINE L1 1 6152 -3 246 174 0 0 chr3 8857563 8857609 -218666969 + (TATG)n Simple_repeat Simple_repeat 2 47 0 198 0 0 0 chr3 8857676 8857698 -218666880 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 345 47 0 0 chr3 8857697 8857740 -218666838 + (TA)n Simple_repeat Simple_repeat 2 44 0 2387 207 31 66 chr3 8857905 8858479 -218666099 - MLT2B3 LTR ERVL 0 554 1 765 249 42 73 chr3 8859269 8859530 -218665048 - MIR SINE MIR -4 258 6 24 77 0 0 chr3 8860608 8860660 -218663918 + AT_rich Low_complexity Low_complexity 1 52 0 193 322 119 25 chr3 8860854 8860972 -218663606 + L2 LINE L2 3180 3308 -5 466 72 14 0 chr3 8860980 8861049 -218663529 + L1MB1 LINE L1 6098 6167 -1 683 317 20 37 chr3 8861885 8862131 -218662447 + MIR SINE MIR 16 257 -5 222 37 0 0 chr3 8862531 8862558 -218662020 + (CATTT)n Simple_repeat Simple_repeat 4 30 0 2150 116 0 0 chr3 8862558 8862842 -218661736 - AluSx SINE Alu -28 284 1 22 0 0 0 chr3 8862844 8862866 -218661712 + AT_rich Low_complexity Low_complexity 1 22 0 285 274 144 14 chr3 8863642 8863788 -218660790 - MIR SINE MIR 0 262 98 1107 268 155 9 chr3 8864159 8864614 -218659964 - MLT1F1 LTR MaLR -40 527 1 2394 157 36 19 chr3 8865373 8865794 -218658784 - MSTC LTR MaLR 0 428 1 288 0 0 0 chr3 8866367 8866399 -218658179 + (T)n Simple_repeat Simple_repeat 1 32 0 524 289 88 21 chr3 8867102 8867341 -218657237 - MLT1L LTR MaLR -211 404 150 1824 156 3 0 chr3 8867547 8867830 -218656748 + AluSg SINE Alu 27 310 0 209 235 0 12 chr3 8868321 8868402 -218656176 + CT-rich Low_complexity Low_complexity 3 82 0 259 292 39 15 chr3 8868479 8868609 -218655969 + LTR67 LTR ERVL 411 543 -14 1731 134 4 19 chr3 8869047 8869315 -218655263 + AluY SINE Alu 43 306 -5 193 239 0 22 chr3 8870477 8870523 -218654055 + L2 LINE L2 3267 3311 -2 4948 191 19 14 chr3 8870685 8870982 -218653596 + L1PA16 LINE L1 4125 4419 -1747 2238 116 3 0 chr3 8870982 8871293 -218653285 - AluSx SINE Alu 0 312 1 4948 191 19 14 chr3 8871293 8872475 -218652103 + L1PA16 LINE L1 4419 5607 -559 1522 103 4 0 chr3 8872474 8872707 -218651871 - L1PA8 LINE L1 -1642 4504 4271 * 6395 101 1 1 chr3 8872707 8873360 -218651218 + L1PA8 LINE L1 4522 5174 -998 337 48 0 48 chr3 8873360 8873422 -218651156 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 6395 101 1 1 chr3 8873422 8874414 -218650164 + L1PA8 LINE L1 5173 6172 0 2664 154 0 0 chr3 8874416 8874838 -218649740 + L1PA16 LINE L1 5601 6022 -144 972 96 7 0 chr3 8874893 8875028 -218649550 + L1PA16 LINE L1 6022 6157 -9 359 310 37 61 chr3 8875704 8875949 -218648629 - MIR SINE MIR 0 262 24 204 292 0 0 chr3 8876397 8876445 -218648133 + L2 LINE L2 2679 2726 -588 1521 241 34 0 chr3 8876476 8876829 -218647749 + MLT1A1 LTR MaLR 1 365 0 2410 284 159 40 chr3 8876894 8878071 -218646507 - L2 LINE L2 -339 2975 1622 2113 126 0 0 chr3 8878071 8878365 -218646213 + AluSx SINE Alu 1 294 -18 2410 284 159 40 chr3 8878365 8878505 -218646073 - L2 LINE L2 -1692 1622 1500 306 337 11 0 chr3 8878563 8878658 -218645920 + L2 LINE L2 3168 3263 -9 216 0 0 0 chr3 8879369 8879393 -218645185 + (CA)n Simple_repeat Simple_repeat 2 25 0 6476 153 39 18 chr3 8879710 8879975 -218644603 - Tigger3b DNA MER2_type -1797 1231 973 3538 144 0 0 chr3 8879975 8880497 -218644081 + MER1A DNA MER1_type 2 523 -4 6476 153 39 18 chr3 8880497 8881434 -218643144 - Tigger3b DNA MER2_type -2055 973 4 268 284 28 6 chr3 8881873 8882049 -218642529 + (TA)n Simple_repeat Simple_repeat 1 180 0 29 0 0 0 chr3 8882496 8882525 -218642053 + AT_rich Low_complexity Low_complexity 1 29 0 4724 51 0 0 chr3 8882759 8883329 -218641249 + L1PA5 LINE L1 5572 6141 -13 229 208 0 21 chr3 8884359 8884407 -218640171 + (CA)n Simple_repeat Simple_repeat 2 48 0 312 264 10 101 chr3 8884506 8884714 -218639864 + MIR SINE MIR 61 249 -13 501 263 157 80 chr3 8885210 8885624 -218638954 - MLT1H LTR MaLR 0 549 104 2029 155 0 0 chr3 8886695 8886999 -218637579 + AluSx SINE Alu 1 304 -8 639 240 84 0 chr3 8887004 8887158 -218637420 - MER96 DNA MER1_type? -7 168 2 565 269 92 50 chr3 8887404 8887642 -218636936 + MIR SINE MIR 15 262 0 527 165 12 0 chr3 8887743 8887828 -218636750 + HUERS-P3 LTR ERV1 8830 8915 -4 2591 197 55 8 chr3 8887836 8888365 -218636213 + LTR9B LTR ERV1 7 560 -84 207 0 0 0 chr3 8888365 8888388 -218636190 + (A)n Simple_repeat Simple_repeat 1 23 0 23 78 0 0 chr3 8888587 8888638 -218635940 + AT_rich Low_complexity Low_complexity 1 51 0 1614 163 0 0 chr3 8889509 8889761 -218634817 - AluJb SINE Alu -60 252 1 283 363 88 18 chr3 8889804 8890030 -218634548 + MIR SINE MIR 4 245 -17 329 271 211 31 chr3 8890209 8890551 -218634027 - L2 LINE L2 -181 3091 2690 1414 191 3 53 chr3 8891480 8891762 -218632816 + Tigger7 DNA MER2_type 1 268 -2219 517 178 0 11 chr3 8891764 8891854 -218632724 + Tigger7 DNA MER2_type 2395 2483 -4 183 371 81 32 chr3 8891925 8892049 -218632529 - L2 LINE L2 -20 3252 3123 291 357 68 61 chr3 8892373 8892947 -218631631 - L2 LINE L2 -339 2975 2398 2112 174 22 25 chr3 8892951 8893399 -218631179 + L1MC2 LINE L1 5890 6336 -8 443 297 30 36 chr3 8893454 8893619 -218630959 - L2 LINE L2 -1286 2028 1865 1880 301 28 0 chr3 8894284 8894960 -218629618 + L1MEc LINE L1 40 771 -5625 316 314 51 0 chr3 8895199 8895317 -218629261 + MER5C DNA MER1_type 1 124 -200 246 150 117 0 chr3 8895439 8895499 -218629079 + MER5C DNA MER1_type 257 323 -1 213 39 0 0 chr3 8896055 8896081 -218628497 + (T)n Simple_repeat Simple_repeat 1 26 0 2194 125 0 0 chr3 8897115 8897418 -218627160 - AluSx SINE Alu -9 303 1 2522 87 0 0 chr3 8897646 8897957 -218626621 - AluY SINE Alu 0 311 1 226 0 59 0 chr3 8898736 8898770 -218625808 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 3364 90 25 0 chr3 8898772 8899218 -218625360 - LTR22A LTR ERVK 0 458 2 965 226 5 5 chr3 8901886 8902090 -218622488 - MER20 DNA MER1_type 0 219 16 299 279 64 47 chr3 8903000 8903172 -218621406 + MLT1K LTR MaLR 412 586 -2 244 164 75 0 chr3 8904496 8904563 -218620015 - L1M4 LINE L1 -1438 4708 4637 391 297 21 7 chr3 8904850 8904995 -218619583 - ERVL LTR ERVL -4096 1668 1522 299 317 40 71 chr3 8905384 8905709 -218618869 - ERVL LTR ERVL -4618 1036 722 1184 300 90 7 chr3 8906271 8906714 -218617864 - MLT2E LTR ERVL -7 621 142 343 349 40 20 chr3 8906870 8907019 -218617559 + MIR SINE MIR 11 162 -100 475 261 25 6 chr3 8907020 8907181 -218617397 + L1MCa LINE L1 156 319 -6245 3271 53 24 40 chr3 8907264 8907719 -218616859 + LTR7 LTR ERV1 1 448 -2 19619 83 9 27 chr3 8907721 8910761 -218613817 + HERVH LTR ERV1 1 2987 -4726 858 135 20 0 chr3 8910755 8910903 -218613675 + HERVH LTR ERV1 3140 3290 -4423 * 2964 133 4 6 chr3 8910893 8911396 -218613182 + HERVH LTR ERV1 3492 3993 -3720 10066 60 7 3 chr3 8911398 8912754 -218611824 + HERVH LTR ERV1 4488 5848 -1865 253 233 101 39 chr3 8912791 8912920 -218611658 + L1MCa LINE L1 744 880 -5165 1936 105 94 0 chr3 8912931 8913208 -218611370 + AluY SINE Alu 1 303 -8 3231 230 76 41 chr3 8913213 8913422 -218611156 + L1MCa LINE L1 969 1169 -5395 2491 76 0 13 chr3 8913422 8913737 -218610841 + AluY SINE Alu 1 311 0 3231 230 76 41 chr3 8913737 8916636 -218607942 + L1MCa LINE L1 1169 4289 -2275 241 231 0 0 chr3 8916639 8916691 -218607887 + LTR30 LTR ERV1 1 52 -670 1079 165 134 27 chr3 8916691 8916952 -218607626 + pTR5 LTR ERV1 1395 1683 -755 1235 191 52 30 chr3 8916964 8917293 -218607285 + L1MC2 LINE L1 5999 6334 -10 186 103 0 0 chr3 8917421 8917450 -218607128 + (TTA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr3 8918354 8918384 -218606194 + AT_rich Low_complexity Low_complexity 1 30 0 180 304 25 25 chr3 8919121 8919200 -218605378 + MIR SINE MIR 16 94 -114 315 63 0 127 chr3 8919257 8919320 -218605258 - MLT2D LTR ERVL -11 403 349 7390 61 4 0 chr3 8919441 8920450 -218604128 + L1P LINE L1 4391 5403 -743 1742 169 63 23 chr3 8920461 8920811 -218603767 - MLT2D LTR ERVL -50 364 1 196 336 25 8 chr3 8920813 8920935 -218603643 + MIR SINE MIR 139 262 0 25 51 0 0 chr3 8921700 8921739 -218602839 + AT_rich Low_complexity Low_complexity 1 39 0 2149 181 60 2 chr3 8922136 8922572 -218602006 + LOR1b LTR ERV1 1 461 0 21 0 0 0 chr3 8922750 8922771 -218601807 + AT_rich Low_complexity Low_complexity 1 21 0 233 239 90 15 chr3 8923611 8923678 -218600900 + MIR SINE MIR 68 139 -123 600 293 54 16 chr3 8924035 8924277 -218600301 - MIR SINE MIR -6 256 6 488 249 106 67 chr3 8924351 8924819 -218599759 + MLT1H LTR MaLR 29 549 0 346 198 86 43 chr3 8924841 8924957 -218599621 - L1ME4a LINE L1 -1 6120 6000 231 244 0 0 chr3 8924984 8925029 -218599549 - MIR SINE MIR -23 239 195 454 329 87 0 chr3 8925269 8925430 -218599148 - MIR SINE MIR -87 175 1 646 213 0 8 chr3 8925701 8925823 -218598755 + FLAM_A SINE Alu 5 125 -8 329 208 83 104 chr3 8927079 8927142 -218597436 + MER5B DNA MER1_type 1 64 -114 2328 119 0 0 chr3 8927142 8927454 -218597124 + AluSx SINE Alu 1 312 0 329 208 83 104 chr3 8927454 8927534 -218597044 + MER5B DNA MER1_type 64 141 -37 413 296 88 39 chr3 8927722 8927982 -218596596 + MLT1L LTR MaLR 123 395 -220 273 273 76 8 chr3 8928028 8928160 -218596418 + MLT1L LTR MaLR 466 606 -9 22 0 0 0 chr3 8928636 8928658 -218595920 + AT_rich Low_complexity Low_complexity 1 22 0 433 235 0 12 chr3 8928789 8928874 -218595704 + L2 LINE L2 3230 3313 0 182 268 155 0 chr3 8929251 8929322 -218595256 - L2 LINE L2 -10 3303 3222 628 309 18 0 chr3 8929808 8929976 -218594602 - MER5B DNA MER1_type 0 178 8 27 0 0 0 chr3 8930336 8930363 -218594215 + AT_rich Low_complexity Low_complexity 1 27 0 282 194 60 0 chr3 8931068 8931135 -218593443 - MER58 DNA MER1_type -13 2407 2337 623 259 115 8 chr3 8932015 8932258 -218592320 + MER5C DNA MER1_type 1 269 -55 3199 111 31 0 chr3 8932422 8932898 -218591680 + PABL_A LTR ERV1 1 491 -169 1957 115 36 91 chr3 8932898 8933102 -218591476 - THE1B LTR MaLR -1 363 188 2235 131 0 0 chr3 8933102 8933414 -218591164 - AluSx SINE Alu 0 312 1 1957 115 36 91 chr3 8933414 8933593 -218590985 - THE1B LTR MaLR -176 188 1 11396 101 12 3 chr3 8933593 8935159 -218589419 - THE1B-int LTR MaLR 0 1580 1 2242 138 8 24 chr3 8935159 8935529 -218589049 - THE1B LTR MaLR 0 364 1 1156 87 29 6 chr3 8935529 8935701 -218588877 + PABL_A LTR ERV1 485 660 0 269 241 72 0 chr3 8935740 8935823 -218588755 - MIR SINE MIR -70 192 104 438 236 26 47 chr3 8935823 8935960 -218588618 - LTR37B LTR ERV1 0 468 335 4067 122 19 2 chr3 8935960 8936584 -218587994 - MER41B LTR ERV1 0 635 1 438 236 26 47 chr3 8936584 8936637 -218587941 - LTR37B LTR ERV1 -133 335 282 740 164 111 58 chr3 8936669 8936858 -218587720 + MER93b LTR ERV1 27 225 -148 1653 194 83 35 chr3 8937056 8937683 -218586895 + MER39 LTR ERV1 8 707 0 574 226 59 23 chr3 8937690 8937909 -218586669 - MER39 LTR ERV1 -426 227 6 347 56 42 14 chr3 8938115 8938187 -218586391 + (TTTA)n Simple_repeat Simple_repeat 2 75 0 7240 30 0 0 chr3 8938187 8939083 -218585495 - L1PA3 LINE L1 -6 6149 5254 512 264 21 0 chr3 8939092 8939232 -218585346 + MIR SINE MIR 86 228 -34 430 220 83 15 chr3 8941477 8941609 -218582969 - MER104 DNA Tc2 -18 162 22 38 0 0 0 chr3 8941758 8941796 -218582782 + AT_rich Low_complexity Low_complexity 1 38 0 572 113 0 0 chr3 8942245 8942325 -218582253 + AluS SINE Alu 1 80 -233 2063 128 38 0 chr3 8942327 8942616 -218581962 + AluSq SINE Alu 14 313 0 260 262 99 29 chr3 8942617 8942789 -218581789 + MLT1K LTR MaLR 405 588 0 200 326 78 54 chr3 8942874 8943003 -218581575 + L2 LINE L2 3182 3313 0 185 333 0 48 chr3 8943191 8943254 -218581324 + L2 LINE L2 3200 3259 -13 1640 113 254 29 chr3 8943933 8944279 -218580299 - MSTA LTR MaLR -2 426 3 301 344 76 18 chr3 8945033 8945257 -218579321 - MIR SINE MIR -14 248 12 336 318 40 27 chr3 8946033 8946181 -218578397 - MIR SINE MIR -12 250 101 192 431 29 0 chr3 8946305 8946407 -218578171 - MIR SINE MIR -97 165 61 455 0 18 0 chr3 8947734 8947789 -218576789 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 250 330 40 10 chr3 8947800 8947900 -218576678 + L2 LINE L2 3210 3312 -1 527 260 130 6 chr3 8948178 8948347 -218576231 - L3 LINE CR1 -76 1501 1312 1986 224 41 64 chr3 8949895 8950461 -218574117 + MLT2B3 LTR ERVL 2 554 0 230 224 15 15 chr3 8951512 8951579 -218572999 + (TA)n Simple_repeat Simple_repeat 2 68 0 717 252 13 8 chr3 8951579 8951740 -218572838 - MIR SINE MIR -67 141 23 1361 222 11 40 chr3 8951740 8952091 -218572487 - MER58B DNA MER1_type 0 341 1 717 252 13 8 chr3 8952091 8952109 -218572469 - MIR SINE MIR -185 23 7 328 246 339 0 chr3 8952120 8952250 -218572328 + MER5A DNA MER1_type 16 189 0 413 201 132 35 chr3 8952443 8952587 -218571991 - MER103 DNA DNA -7 159 2 334 246 0 154 chr3 8952837 8953012 -218571566 + MIR SINE MIR 96 243 -19 894 224 16 0 chr3 8953099 8953291 -218571287 + MER3 DNA MER1_type 15 209 0 206 391 126 11 chr3 8954160 8954510 -218570068 + L2 LINE L2 2369 2758 -556 2271 206 57 7 chr3 8954944 8955380 -218569198 - LTR32 LTR ERVL 0 471 14 284 310 65 60 chr3 8955380 8955564 -218569014 + L2 LINE L2 3087 3271 -1 182 156 0 0 chr3 8956547 8956579 -218567999 - L2 LINE L2 -1 3271 3240 361 309 55 36 chr3 8956688 8956908 -218567670 - MLT1K LTR MaLR -2 586 363 1957 221 54 74 chr3 8957026 8957805 -218566773 - LTR28 LTR ERV1 0 1020 109 397 241 207 13 chr3 8957806 8957967 -218566611 - LTR28 LTR ERV1 -286 178 1 1285 190 146 24 chr3 8958701 8959127 -218565451 - LTR54B LTR ERV1 -2 496 19 191 263 25 38 chr3 8959283 8959363 -218565215 + L2 LINE L2 3150 3228 -44 1993 139 11 0 chr3 8959424 8959711 -218564867 + AluSq SINE Alu 1 290 -23 1094 194 18 14 chr3 8959712 8959929 -218564649 + MER20 DNA MER1_type 2 219 0 246 333 9 9 chr3 8959943 8960048 -218564530 - MIR SINE MIR -111 151 47 2134 92 26 36 chr3 8961975 8962280 -218562298 - AluSp SINE Alu -11 302 1 2102 190 19 12 chr3 8962529 8962940 -218561638 - MLT2D LTR ERVL 0 414 1 1553 155 107 0 chr3 8963662 8963951 -218560627 - AluSx SINE Alu 0 320 5 195 357 18 65 chr3 8964135 8964303 -218560275 - L2 LINE L2 -225 3047 2888 2206 99 27 0 chr3 8965142 8965434 -218559144 - AluSg1 SINE Alu -9 300 1 1768 190 116 9 chr3 8965775 8966196 -218558382 - MLT1C LTR MaLR -1 466 1 329 373 42 0 chr3 8967099 8967241 -218557337 - MIR3 SINE MIR -25 183 36 572 237 0 0 chr3 8967420 8967534 -218557044 - Charlie1 DNA MER1_type 0 2761 2648 2395 197 52 41 chr3 8967538 8968147 -218556431 - L1MB8 LINE L1 -2 6245 5630 2781 265 27 7 chr3 8968154 8969081 -218555497 - L1MB8 LINE L1 -2516 3699 2751 1805 201 18 0 chr3 8969081 8969419 -218555159 + MER2 DNA MER2_type 1 344 0 2781 265 27 7 chr3 8969419 8969453 -218555125 - L1MB8 LINE L1 -3464 2751 2719 2055 132 0 10 chr3 8969460 8969771 -218554807 - MER50 LTR ERV1 -30 704 397 1565 117 8 25 chr3 8969804 8970044 -218554534 - MER50 LTR ERV1 -498 236 1 1108 258 87 15 chr3 8970044 8970855 -218553723 - L1MB8 LINE L1 -3493 2722 1868 351 203 0 0 chr3 8970990 8971064 -218553514 + (TA)n Simple_repeat Simple_repeat 1 74 0 4633 252 57 51 chr3 8971081 8971925 -218552653 - L1M4 LINE L1 -4467 2565 1727 2535 71 0 0 chr3 8971925 8972236 -218552342 - AluY SINE Alu 0 311 1 4633 252 57 51 chr3 8972236 8973487 -218551091 - L1M4 LINE L1 -5305 1727 2 871 201 22 93 chr3 8973488 8973756 -218550822 - Charlie1 DNA MER1_type -2512 249 1 260 51 0 26 chr3 8974033 8974072 -218550506 + (CA)n Simple_repeat Simple_repeat 1 38 0 180 182 0 0 chr3 8975674 8975718 -218548860 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 570 347 60 8 chr3 8976543 8976791 -218547787 - MIR SINE MIR -1 261 1 255 308 0 0 chr3 8976808 8976873 -218547705 + A-rich Low_complexity Low_complexity 4 68 0 315 271 134 53 chr3 8976878 8977125 -218547453 + HAL1 LINE L1 1011 1277 -1230 443 308 8 0 chr3 8977129 8977262 -218547316 + GA-rich Low_complexity Low_complexity 3 136 0 21 36 0 0 chr3 8977289 8977317 -218547261 + AT_rich Low_complexity Low_complexity 1 28 0 520 253 148 13 chr3 8977344 8977573 -218547005 + MIR SINE MIR 1 260 -2 238 330 0 0 chr3 8978473 8978561 -218546017 + (TG)n Simple_repeat Simple_repeat 1 88 0 997 206 123 83 chr3 8978806 8979156 -218545422 + MLT1A1 LTR MaLR 1 364 -1 464 298 115 34 chr3 8979662 8979897 -218544681 - MIR SINE MIR 0 262 9 2256 115 0 0 chr3 8979901 8980205 -218544373 - AluSx SINE Alu -8 304 1 2176 109 7 0 chr3 8980504 8980797 -218543781 - AluSx SINE Alu -13 299 5 2123 110 0 7 chr3 8981968 8982267 -218542311 - AluSx SINE Alu -15 297 1 216 185 0 0 chr3 8982725 8982779 -218541799 + T-rich Low_complexity Low_complexity 1 54 0 512 277 36 0 chr3 8983006 8983143 -218541435 - MER45B DNA AcHobo -786 254 113 410 268 93 22 chr3 8983315 8983498 -218541080 + MER117 DNA MER1_type 2 197 0 26 30 0 0 chr3 8985175 8985208 -218539370 + AT_rich Low_complexity Low_complexity 1 33 0 183 246 49 16 chr3 8985304 8985365 -218539213 + MIR3 SINE MIR 118 180 -28 21 36 0 0 chr3 8986369 8986397 -218538181 + AT_rich Low_complexity Low_complexity 1 28 0 302 345 48 12 chr3 8986578 8986746 -218537832 - HAL1b LINE L1 -438 910 737 2474 52 0 0 chr3 8987394 8987708 -218536870 - AluY SINE Alu 0 314 1 249 323 16 16 chr3 8987727 8987854 -218536724 - HAL1 LINE L1 -837 1670 1544 1712 126 100 0 chr3 8988128 8988397 -218536181 + AluJb SINE Alu 1 296 -16 2096 109 0 0 chr3 8988586 8988861 -218535717 - AluSc SINE Alu -18 291 17 423 274 36 48 chr3 8989118 8989286 -218535292 - L1ME3A LINE L1 -9 6161 5996 860 250 59 10 chr3 8990999 8991403 -218533175 - L1ME LINE L1 -2884 3760 3337 1624 179 188 8 chr3 8991659 8992016 -218532562 + MSTC LTR MaLR 8 428 0 777 271 163 18 chr3 8992020 8992070 -218532508 + MLT1E1 LTR MaLR 89 130 -463 3087 86 32 5 chr3 8992070 8992107 -218532471 - MLT2A1 LTR ERVL 0 444 410 333 0 0 0 chr3 8992107 8992144 -218532434 + (CA)n Simple_repeat Simple_repeat 2 38 0 3087 86 32 5 chr3 8992144 8992538 -218532040 - MLT2A1 LTR ERVL -34 410 1 777 271 163 18 chr3 8992538 8992764 -218531814 + MLT1E1 LTR MaLR 130 405 -188 800 257 6 6 chr3 8992888 8993067 -218531511 + MLT1E1 LTR MaLR 476 654 0 345 280 36 44 chr3 8993085 8993335 -218531243 - L1ME LINE L1 -3744 2900 2653 2355 92 0 3 chr3 8993936 8994242 -218530336 - AluY SINE Alu -6 305 1 242 255 38 84 chr3 8994273 8994536 -218530042 - L1ME LINE L1 -4904 1638 1516 30532 34 15 1 chr3 8994586 9000604 -218523974 - L1PA2 LINE L1 -2 6153 4 385 258 76 59 chr3 9000612 9000954 -218523624 - L1ME LINE L1 -5075 1559 1271 341 324 90 37 chr3 9001822 9002066 -218522512 - HAL1 LINE L1 -1426 1081 825 414 0 0 0 chr3 9002687 9002733 -218521845 + (TG)n Simple_repeat Simple_repeat 2 47 0 216 273 71 40 chr3 9003563 9003662 -218520916 - L2 LINE L2 -4 3309 3208 1949 123 7 3 chr3 9003978 9004301 -218520277 - AluSq SINE Alu 0 324 1 794 292 75 35 chr3 9004399 9004800 -218519778 - MLT2F LTR ERVL -10 653 237 375 285 152 19 chr3 9004814 9005077 -218519501 - MLT2F LTR ERVL -353 310 13 619 341 35 0 chr3 9005225 9005454 -218519124 + MIR SINE MIR 19 255 -7 1880 204 25 46 chr3 9006135 9006615 -218517963 - L1MA9 LINE L1 -35 6277 5808 12212 38 1 1 chr3 9006922 9009163 -218515415 + L1PA4 LINE L1 3907 6153 -2 226 386 48 24 chr3 9009204 9009499 -218515079 + L2 LINE L2 2045 2346 -968 499 295 68 91 chr3 9009788 9010270 -218514308 + L2 LINE L2 1606 2076 -1238 21 0 0 0 chr3 9011473 9011494 -218513084 + AT_rich Low_complexity Low_complexity 1 21 0 908 327 51 57 chr3 9011507 9012073 -218512505 + MLT1K LTR MaLR 10 572 -16 264 77 0 0 chr3 9012885 9012924 -218511654 + (CA)n Simple_repeat Simple_repeat 2 40 0 651 214 0 0 chr3 9012924 9013069 -218511509 + L1MA9 LINE L1 6168 6312 0 2477 69 0 0 chr3 9013333 9013637 -218510941 - AluY SINE Alu -7 304 1 213 324 14 27 chr3 9013904 9013978 -218510600 - L2 LINE L2 -9 3263 3191 4831 106 11 3 chr3 9014857 9015565 -218509013 + L1PA13 LINE L1 5448 6161 -2 237 265 119 92 chr3 9015744 9015863 -218508715 + MIR SINE MIR 48 175 -87 2261 105 3 0 chr3 9015863 9016168 -218508410 + AluY SINE Alu 1 306 -5 237 265 119 92 chr3 9016168 9016233 -218508345 + MIR SINE MIR 175 237 -25 253 295 0 0 chr3 9016835 9016913 -218507665 + L1MC/D LINE L1 5722 5799 -2009 2238 55 10 3 chr3 9017330 9017620 -218506958 - AluY SINE Alu -19 292 1 238 164 0 30 chr3 9017944 9018011 -218506567 + T-rich Low_complexity Low_complexity 4 68 0 1575 158 16 16 chr3 9021095 9021398 -218503180 - L1MA4 LINE L1 -1 6299 5997 291 93 0 0 chr3 9022842 9022885 -218501693 + (CA)n Simple_repeat Simple_repeat 2 44 0 2156 123 10 0 chr3 9023007 9023332 -218501246 - AluSc SINE Alu 0 328 1 1548 173 40 4 chr3 9023344 9023622 -218500956 - AluJb SINE Alu -24 288 1 433 319 122 55 chr3 9023983 9024222 -218500356 - L3 LINE CR1 -751 826 604 1817 207 89 20 chr3 9024222 9024729 -218499849 + MER34 LTR ERV1 1 542 0 433 319 122 55 chr3 9024729 9024877 -218499701 - L3 LINE CR1 -973 604 404 2316 60 3 33 chr3 9024877 9025179 -218499399 - AluY SINE Alu -18 293 1 433 319 122 55 chr3 9025179 9025226 -218499352 - L3 LINE CR1 -1173 404 362 216 297 90 9 chr3 9027095 9027206 -218497372 + MIR SINE MIR 58 177 -85 26 0 0 0 chr3 9027925 9027951 -218496627 + AT_rich Low_complexity Low_complexity 1 26 0 3235 98 20 2 chr3 9028426 9028864 -218495714 + LTR10B LTR ERV1 1 446 -59 1217 205 17 8 chr3 9028868 9029107 -218495471 - MLT1A1 LTR MaLR -124 241 1 5699 236 75 37 chr3 9029113 9030777 -218493801 - MLT1A1-int LTR MaLR -7 1728 2 845 170 24 5 chr3 9030779 9031079 -218493499 - MLT1A1 LTR MaLR 0 365 1 290 298 101 63 chr3 9031170 9031328 -218493250 + MIR SINE MIR 36 199 -63 374 351 93 7 chr3 9031523 9031674 -218492904 + MIR SINE MIR 82 245 -17 216 276 81 41 chr3 9033824 9033947 -218490631 - L2 LINE L2 -1 3312 3185 30 27 0 0 chr3 9034183 9034220 -218490358 + AT_rich Low_complexity Low_complexity 1 37 0 208 366 55 24 chr3 9034244 9034408 -218490170 + L3b LINE CR1 1391 1559 -24 2309 113 0 0 chr3 9036279 9036588 -218487990 + AluSx SINE Alu 1 309 -3 627 228 24 87 chr3 9037044 9037250 -218487328 - MER58C DNA MER1_type -21 194 2 341 256 0 0 chr3 9037852 9037927 -218486651 + MER45 DNA AcHobo 1507 1581 0 707 247 7 0 chr3 9037941 9038091 -218486487 - MER45A DNA AcHobo -6 172 22 27 29 0 0 chr3 9039104 9039138 -218485440 + AT_rich Low_complexity Low_complexity 1 34 0 37 39 0 0 chr3 9039996 9040047 -218484531 + AT_rich Low_complexity Low_complexity 1 51 0 2127 117 23 10 chr3 9040052 9040360 -218484218 + AluSq SINE Alu 1 312 -1 296 322 67 13 chr3 9040972 9041121 -218483457 - L2 LINE L2 -213 3059 2903 1399 177 12 4 chr3 9041193 9041447 -218483131 - MER83 LTR ERV1 0 448 193 228 35 0 0 chr3 9041683 9041712 -218482866 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 299 326 112 66 chr3 9042735 9042977 -218481601 - L2 LINE L2 -16 3256 3004 714 225 0 80 chr3 9043938 9044125 -218480453 + FAM SINE Alu 2 173 -2 279 0 0 0 chr3 9044518 9044549 -218480029 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7223 77 19 0 chr3 9044560 9046317 -218478261 - L1PA7 LINE L1 -11 6143 4369 25610 96 6 21 chr3 9046317 9051619 -218472959 - L1P3 LINE L1 -1164 5297 1 1649 195 3 3 chr3 9051947 9052244 -218472334 - AluJb SINE Alu -13 299 3 299 319 174 7 chr3 9052307 9052445 -218472133 - MER5A DNA MER1_type -3 186 26 271 287 101 23 chr3 9053120 9053249 -218471329 - MIR SINE MIR 0 262 124 * 316 347 143 40 chr3 9053229 9053723 -218470855 + L2 LINE L2 2672 3227 -86 2149 114 7 0 chr3 9054290 9054580 -218469998 + AluSc SINE Alu 1 292 -17 352 321 141 13 chr3 9055734 9056006 -218468572 - MLT1L LTR MaLR 0 615 229 776 183 7 0 chr3 9056095 9056232 -218468346 + AluJo SINE Alu 1 138 -174 7783 18 0 0 chr3 9056283 9057646 -218466932 - L1PA2 LINE L1 0 6155 4792 3590 19 0 0 chr3 9057646 9058068 -218466510 + L1PA2 LINE L1 4369 4790 -1356 342 294 228 28 chr3 9058072 9058252 -218466326 - MIR SINE MIR -46 216 1 567 278 81 45 chr3 9058584 9058849 -218465729 - L1MC4 LINE L1 -527 7515 7261 2032 193 119 104 chr3 9058849 9059663 -218464915 + LTR1B LTR ERV1 1 826 0 567 278 81 45 chr3 9059663 9059916 -218464662 - L1MC4 LINE L1 -781 7261 6976 204 113 0 94 chr3 9059921 9059974 -218464604 + (TTTTTG)n Simple_repeat Simple_repeat 2 49 0 336 316 66 7 chr3 9060073 9060225 -218464353 + L1MC4 LINE L1 7498 7658 -384 450 303 59 47 chr3 9060243 9060563 -218464015 + L1MC4 LINE L1 7712 8035 -7 723 268 6 11 chr3 9060896 9061075 -218463503 - MER58A DNA MER1_type -22 202 25 225 393 13 20 chr3 9061134 9061284 -218463294 + L2 LINE L2 2907 3055 -217 209 205 205 26 chr3 9061472 9061550 -218463028 + L2 LINE L2 3218 3309 -4 2251 135 0 0 chr3 9061807 9062118 -218462460 + AluSx SINE Alu 1 311 -1 22 35 0 0 chr3 9062547 9062576 -218462002 + AT_rich Low_complexity Low_complexity 1 29 0 4154 125 24 5 chr3 9062737 9063369 -218461209 + LTR9B LTR ERV1 1 644 0 30 27 0 0 chr3 9063456 9063493 -218461085 + AT_rich Low_complexity Low_complexity 1 37 0 1772 171 15 73 chr3 9065479 9065888 -218458690 - MLT1B LTR MaLR 0 390 6 413 194 0 0 chr3 9066306 9066373 -218458205 + Tigger2 DNA MER2_type 1 67 -2651 * 2579 169 11 5 chr3 9066359 9066808 -218457770 + Tigger2 DNA MER2_type 2267 2718 0 6534 147 37 36 chr3 9067466 9068063 -218456515 + Tigger3b DNA MER2_type 1 596 -2432 2261 109 0 7 chr3 9068063 9068365 -218456213 + AluSc SINE Alu 1 300 -9 6534 147 37 36 chr3 9068365 9068997 -218455581 + Tigger3b DNA MER2_type 596 1231 0 224 29 0 29 chr3 9069510 9069544 -218455034 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 1315 232 30 55 chr3 9069760 9069801 -218454777 - MLT2C2 LTR ERVL -3 461 420 315 71 0 0 chr3 9069801 9069843 -218454735 + (TG)n Simple_repeat Simple_repeat 2 43 0 1315 232 30 55 chr3 9069843 9070270 -218454308 - MLT2C2 LTR ERVL -44 420 5 2544 99 17 11 chr3 9070590 9070952 -218453626 - THE1B LTR MaLR 0 364 1 2128 122 0 16 chr3 9073546 9073858 -218450720 + AluSx SINE Alu 1 307 -5 396 103 0 0 chr3 9073858 9073916 -218450662 + (GGAA)n Simple_repeat Simple_repeat 1 58 0 2387 64 3 0 chr3 9074546 9074842 -218449736 + AluY SINE Alu 1 297 -14 2121 96 24 3 chr3 9076608 9076900 -218447678 + AluSp SINE Alu 1 298 -15 23 33 0 0 chr3 9078537 9078567 -218446011 + AT_rich Low_complexity Low_complexity 1 30 0 706 293 28 23 chr3 9078898 9079113 -218445465 - MIR SINE MIR -46 216 1 2384 61 14 0 chr3 9080211 9080508 -218444070 - AluY SINE Alu -10 301 1 507 279 14 7 chr3 9080610 9080750 -218443828 - MLT1G1 LTR MaLR -440 155 15 468 344 26 31 chr3 9080795 9080990 -218443588 - MIR SINE MIR -41 221 28 381 289 78 67 chr3 9081029 9081475 -218443103 + HAL1b LINE L1 224 674 -674 27 0 0 0 chr3 9081791 9081818 -218442760 + AT_rich Low_complexity Low_complexity 1 27 0 333 0 0 0 chr3 9082103 9082140 -218442438 + (TG)n Simple_repeat Simple_repeat 2 38 0 346 283 23 58 chr3 9082390 9082563 -218442015 - L1M4 LINE L1 -1446 4700 4534 2078 124 3 0 chr3 9082755 9083037 -218441541 - AluSp SINE Alu -30 283 1 21 36 0 0 chr3 9083215 9083243 -218441335 + AT_rich Low_complexity Low_complexity 1 28 0 1014 287 44 75 chr3 9083838 9084426 -218440152 + L1MC2 LINE L1 13 582 -5463 1814 161 3 17 chr3 9085033 9085332 -218439246 - AluJo SINE Alu -17 295 1 292 194 16 0 chr3 9085348 9085410 -218439168 + L1MC2 LINE L1 762 824 -5742 4289 228 90 52 chr3 9085438 9085784 -218438794 + L1M3e LINE L1 781 1112 -5451 2046 161 0 0 chr3 9085784 9086094 -218438484 + AluSx SINE Alu 1 310 -2 4289 228 90 52 chr3 9086094 9087379 -218437199 + L1M3e LINE L1 1112 2449 -4114 2614 188 27 21 chr3 9087379 9087852 -218436726 + MLT2B2 LTR ERVL 1 479 -36 261 98 0 0 chr3 9087852 9087893 -218436685 + (TG)n Simple_repeat Simple_repeat 2 42 0 2614 188 27 21 chr3 9087893 9087931 -218436647 + MLT2B2 LTR ERVL 479 515 0 4289 228 90 52 chr3 9087931 9088183 -218436395 + L1M3e LINE L1 2449 2690 -3873 1299 225 11 11 chr3 9088219 9088486 -218436092 + Tigger7 DNA MER2_type 1 267 -466 306 225 14 14 chr3 9088484 9088555 -218436023 + Tigger7 DNA MER2_type 2389 2459 -28 * 309 222 14 14 chr3 9088576 9088648 -218435930 + Tigger7 DNA MER2_type 2393 2464 -27 334 197 0 28 chr3 9088669 9088740 -218435838 + Tigger7 DNA MER2_type 2396 2464 -27 279 236 14 14 chr3 9088760 9088832 -218435746 + Tigger7 DNA MER2_type 2389 2460 -27 471 223 0 21 chr3 9088853 9088947 -218435631 + Tigger7 DNA MER2_type 2392 2483 -4 6744 231 71 55 chr3 9088949 9089855 -218434723 + L1MC2 LINE L1 2866 3756 -3006 294 29 0 0 chr3 9089855 9089890 -218434688 + (TC)n Simple_repeat Simple_repeat 2 36 0 6744 231 71 55 chr3 9089890 9090872 -218433706 + L1MC2 LINE L1 3756 4720 -2042 1242 169 4 8 chr3 9090872 9091120 -218433458 + L1MA4 LINE L1 6053 6299 -1 6744 231 71 55 chr3 9091120 9093059 -218431519 + L1MC2 LINE L1 4720 6754 -8 5179 248 74 61 chr3 9093423 9094959 -218429619 - L1M4 LINE L1 -1145 5001 3409 2146 102 0 0 chr3 9094959 9095269 -218429309 - AluSq SINE Alu 0 310 1 5179 248 74 61 chr3 9095269 9096576 -218428002 - L1M4 LINE L1 -2737 3409 2120 3706 177 31 20 chr3 9096578 9097514 -218427064 + L1PA16 LINE L1 4964 5914 -252 896 148 13 19 chr3 9097528 9097683 -218426895 + L1PA16 LINE L1 6001 6154 -12 583 249 105 30 chr3 9097694 9098007 -218426571 + L1ME LINE L1 5191 5521 -645 * 20481 55 10 2 chr3 9097976 9102573 -218422005 + L1PA5 LINE L1 1524 6153 -1 5862 196 42 37 chr3 9103332 9105690 -218418888 - L1MA7 LINE L1 -10 7700 5325 3921 240 57 26 chr3 9105673 9106789 -218417789 - L1MA7 LINE L1 -2689 4876 3687 * 2484 135 3 3 chr3 9106789 9107152 -218417426 - THE1B LTR MaLR -1 363 1 3921 240 57 26 chr3 9107152 9107552 -218417026 - L1MA7 LINE L1 -3878 3687 3301 1975 254 41 25 chr3 9107749 9108305 -218416273 - L1MA7 LINE L1 -5715 1781 1217 335 241 116 9 chr3 9109037 9109149 -218415429 + MLT1J2 LTR MaLR 324 447 -3 488 323 64 59 chr3 9109166 9109621 -218414957 - L2 LINE L2 -6 3307 2851 1579 163 0 7 chr3 9109733 9110003 -218414575 + AluJb SINE Alu 1 268 -44 204 143 0 0 chr3 9110007 9110049 -218414529 + (GAAA)n Simple_repeat Simple_repeat 4 45 0 607 184 11 34 chr3 9110057 9110236 -218414342 + GA-rich Low_complexity Low_complexity 2 176 0 695 361 92 24 chr3 9110408 9110954 -218413624 - L2 LINE L2 -650 2664 2082 251 248 29 88 chr3 9113425 9113562 -218411016 - L1MC4 LINE L1 0 8042 7914 1019 273 74 71 chr3 9113589 9114308 -218410270 - L1MC4 LINE L1 -120 7922 7202 1558 211 31 0 chr3 9114364 9114724 -218409854 - L1MD1 LINE L1 -8 6628 6258 2815 230 15 20 chr3 9114725 9115555 -218409023 - L1MD1 LINE L1 -428 6208 5376 1387 189 20 20 chr3 9115555 9115856 -218408722 - L1MB2 LINE L1 -8 6163 5863 2815 230 15 20 chr3 9115856 9115907 -218408671 - L1MD1 LINE L1 -1260 5376 5326 189 74 0 0 chr3 9115907 9115934 -218408644 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 2815 230 15 20 chr3 9115934 9116057 -218408521 - L1MD1 LINE L1 -1310 5326 5213 1040 269 85 13 chr3 9116054 9116725 -218407853 - L1MD1 LINE L1 -2405 4135 3397 * 416 170 7 54 chr3 9116738 9116830 -218407748 - L1MD1 LINE L1 -3962 2578 2494 2303 88 0 3 chr3 9116830 9117136 -218407442 - AluSx SINE Alu -7 305 1 416 170 7 54 chr3 9117136 9117190 -218407388 - L1MD1 LINE L1 -4046 2494 2439 1601 229 72 105 chr3 9117240 9117820 -218406758 + MER77 LTR ERV1 41 601 -4 3274 235 170 50 chr3 9117850 9117977 -218406601 - L1MD1 LINE L1 -5137 1403 1293 1734 156 0 11 chr3 9117977 9118259 -218406319 - AluSg SINE Alu -31 279 1 3274 235 170 50 chr3 9118259 9119370 -218405208 - L1MD1 LINE L1 -5247 1293 16 302 326 11 0 chr3 9119555 9119644 -218404934 + L2 LINE L2 3199 3288 -25 322 298 109 32 chr3 9121300 9121548 -218403030 + L1ME4a LINE L1 5842 6108 -13 492 190 84 42 chr3 9122322 9122464 -218402114 + MIR SINE MIR 102 249 -13 198 263 0 0 chr3 9122512 9122550 -218402028 + L2 LINE L2 3251 3288 -25 374 139 14 0 chr3 9122559 9122631 -218401947 + (ATG)n Simple_repeat Simple_repeat 1 73 0 293 368 8 45 chr3 9122679 9122812 -218401766 + MER91A DNA MER1_type 47 174 -22 3639 125 49 16 chr3 9123144 9123776 -218400802 + MER39B LTR ERV1 1 653 0 2302 103 0 0 chr3 9123855 9124156 -218400422 - AluSc SINE Alu -8 301 1 267 304 44 44 chr3 9125639 9125774 -218398804 + MER5C DNA MER1_type 1 135 -189 229 279 66 41 chr3 9126095 9126217 -218398361 - MIR SINE MIR -25 237 113 221 308 56 19 chr3 9126427 9126534 -218398044 + MIR SINE MIR 46 156 -106 265 276 0 13 chr3 9126963 9127039 -218397539 + MIR SINE MIR 172 246 -16 192 360 101 36 chr3 9127212 9127351 -218397227 + MIR3 SINE MIR 16 163 -45 1104 143 32 0 chr3 9127592 9127781 -218396797 - Tigger4(Zombi) DNA MER2_type 0 2731 2537 1557 214 62 10 chr3 9127786 9128090 -218396488 - Tigger4(Zombi) DNA MER2_type -2410 321 2 817 189 60 78 chr3 9129334 9129551 -218395027 + MER20 DNA MER1_type 7 219 0 2323 184 19 17 chr3 9129775 9130243 -218394335 - MER39 LTR ERV1 -6 701 233 253 122 22 89 chr3 9130342 9130432 -218394146 + (ATATG)n Simple_repeat Simple_repeat 2 85 0 771 278 94 74 chr3 9130645 9131185 -218393393 + LTR1B LTR ERV1 39 589 -237 1905 206 43 5 chr3 9132026 9132424 -218392154 + MER34C LTR ERV1 172 584 -1 503 240 25 8 chr3 9132425 9132546 -218392032 + MIR SINE MIR 116 238 -24 214 343 0 0 chr3 9132554 9132624 -218391954 + MIR SINE MIR 193 262 0 1374 134 44 19 chr3 9133285 9133720 -218390858 + LTR54 LTR ERV1 2 508 -2 189 395 98 14 chr3 9134159 9134506 -218390072 - L2 LINE L2 -4 3309 2934 406 322 94 55 chr3 9134561 9134597 -218389981 - L2 LINE L2 -465 2849 2816 225 0 0 0 chr3 9134597 9134622 -218389956 + (CAGAGA)n Simple_repeat Simple_repeat 3 27 0 406 322 94 55 chr3 9134622 9135054 -218389524 - L2 LINE L2 -498 2816 2363 517 375 11 23 chr3 9135084 9135231 -218389347 - L3 LINE CR1 -473 1104 960 869 228 105 40 chr3 9135231 9135631 -218388947 + LTR37A LTR ERV1 1 426 0 517 375 11 23 chr3 9135631 9135747 -218388831 - L3 LINE CR1 -617 960 844 835 114 16 0 chr3 9135859 9135982 -218388596 + AluSp/q SINE Alu 177 301 -12 301 283 40 0 chr3 9136532 9136626 -218387952 - MER34 LTR ERV1 0 542 445 338 222 0 28 chr3 9136626 9136698 -218387880 - Tigger5 DNA MER2_type 0 2323 2254 236 213 0 98 chr3 9136707 9136768 -218387810 - Tigger5 DNA MER2_type -2268 55 1 266 146 107 117 chr3 9136768 9136855 -218387723 - LTR49 LTR ERV1 -90 505 420 2219 187 69 16 chr3 9136855 9137449 -218387129 + MER39 LTR ERV1 1 707 0 548 250 57 39 chr3 9137449 9137815 -218386763 - LTR48B LTR ERV1 -179 608 1 21 0 0 0 chr3 9137959 9137980 -218386598 + AT_rich Low_complexity Low_complexity 1 21 0 1707 180 7 7 chr3 9138489 9138795 -218385783 + AluJo SINE Alu 1 306 -6 200 85 21 43 chr3 9140216 9140263 -218384315 + (TAA)n Simple_repeat Simple_repeat 2 47 0 615 179 15 45 chr3 9140595 9140729 -218383849 - FLAM_A SINE Alu -3 130 1 1773 232 73 13 chr3 9140913 9141508 -218383070 + MER39 LTR ERV1 1 707 0 24 53 0 0 chr3 9141774 9141812 -218382766 + AT_rich Low_complexity Low_complexity 1 38 0 2235 109 0 3 chr3 9142780 9143092 -218381486 - AluSx SINE Alu -1 311 1 627 225 55 69 chr3 9143752 9143970 -218380608 + MER58C DNA MER1_type 1 215 0 232 250 89 0 chr3 9144333 9144389 -218380189 - L2 LINE L2 -73 3240 3180 1024 206 5 0 chr3 9144978 9145182 -218379396 - MER3 DNA MER1_type -4 205 1 277 257 128 0 chr3 9145423 9145532 -218379046 - L1ME3A LINE L1 -8 6162 6040 2346 75 0 0 chr3 9146801 9147094 -218377484 + AluY SINE Alu 1 293 -18 234 0 0 0 chr3 9147413 9147439 -218377139 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 237 33 0 0 chr3 9147438 9147468 -218377110 + (GA)n Simple_repeat Simple_repeat 1 30 0 309 322 66 16 chr3 9147469 9147590 -218376988 + L2 LINE L2 3187 3313 0 185 333 43 21 chr3 9147897 9147990 -218376588 + MIR SINE MIR 73 167 -95 3042 197 22 35 chr3 9148168 9149089 -218375489 + L1MA6 LINE L1 4654 5585 -715 2057 67 0 4 chr3 9149089 9149358 -218375220 - AluY SINE Alu -7 304 37 3042 197 22 35 chr3 9149358 9149633 -218374945 + L1MA6 LINE L1 5585 5862 -438 216 0 0 0 chr3 9149633 9149657 -218374921 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 300 27 0 0 chr3 9149656 9149693 -218374885 + (CA)n Simple_repeat Simple_repeat 1 37 0 3042 197 22 35 chr3 9149657 9150198 -218374380 + L1MA6 LINE L1 5862 6300 0 460 299 199 19 chr3 9151223 9151434 -218373144 + MIR SINE MIR 13 261 -1 222 325 136 26 chr3 9151801 9151955 -218372623 + MIR3 SINE MIR 29 199 -9 1120 245 66 23 chr3 9152406 9152753 -218371825 - MLT1A1 LTR MaLR -3 362 1 2259 110 7 0 chr3 9153219 9153528 -218371050 + AluSq SINE Alu 1 311 -2 1376 162 78 60 chr3 9153539 9153872 -218370706 - MER44D DNA MER2_type 0 609 1 1504 196 25 71 chr3 9154252 9154644 -218369934 + MLT1A2 LTR MaLR 1 374 0 1057 203 5 5 chr3 9155034 9155231 -218369347 + AluJo SINE Alu 104 300 -12 451 292 37 33 chr3 9155269 9155696 -218368882 + L1ME LINE L1 5204 5636 -534 1509 167 0 116 chr3 9156063 9156416 -218368162 + AluJo SINE Alu 1 312 0 474 242 75 17 chr3 9157628 9157748 -218366830 - L2 LINE L2 0 3313 3187 236 324 56 19 chr3 9158342 9158450 -218366128 - L2 LINE L2 -206 3066 2955 200 205 0 0 chr3 9158515 9158554 -218366024 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 21 36 0 0 chr3 9159146 9159174 -218365404 + AT_rich Low_complexity Low_complexity 1 28 0 2296 104 0 0 chr3 9159974 9160272 -218364306 - AluSx SINE Alu -14 298 1 606 256 102 76 chr3 9160279 9160700 -218363878 - L1ME2 LINE L1 -1 6163 5732 388 242 40 32 chr3 9161821 9161945 -218362633 + MIR SINE MIR 94 218 -44 371 356 94 32 chr3 9162445 9162998 -218361580 + L2 LINE L2 1818 2404 -910 2102 148 85 10 chr3 9163506 9163904 -218360674 - MSTA LTR MaLR 0 428 1 9133 154 6 35 chr3 9163904 9165529 -218359049 - MSTA-int LTR MaLR 0 1580 3 2181 131 79 22 chr3 9165531 9165936 -218358642 - MSTA LTR MaLR 0 428 1 258 116 0 0 chr3 9166620 9166663 -218357915 + (GA)n Simple_repeat Simple_repeat 2 44 0 273 314 12 12 chr3 9166720 9166806 -218357772 - L2 LINE L2 -8 3264 3179 280 365 19 0 chr3 9167254 9167361 -218357217 + MIR SINE MIR 30 138 -70 193 267 133 13 chr3 9168178 9168253 -218356325 - MIR SINE MIR -11 251 168 433 224 97 30 chr3 9168674 9168911 -218355667 + HAL1b LINE L1 909 1161 -187 352 341 65 14 chr3 9169690 9169907 -218354671 - MIR SINE MIR -15 247 20 1706 219 88 17 chr3 9169959 9170346 -218354232 + MLT2C2 LTR ERVL 11 432 -32 303 28 0 0 chr3 9170346 9170382 -218354196 + (CA)n Simple_repeat Simple_repeat 2 37 0 1706 219 88 17 chr3 9170382 9170415 -218354163 + MLT2C2 LTR ERVL 432 461 -3 2224 115 51 28 chr3 9170751 9171107 -218353471 - THE1B LTR MaLR 0 364 1 11219 108 4 4 chr3 9171108 9172686 -218351892 - THE1B-int LTR MaLR -1 1579 1 2195 133 0 0 chr3 9172715 9173024 -218351554 - AluSc SINE Alu 0 309 1 2048 135 51 31 chr3 9173024 9173380 -218351198 - THE1B LTR MaLR -1 363 1 914 249 72 16 chr3 9173510 9173594 -218350984 + MER113 DNA MER1_type? 2 80 -441 1922 190 115 26 chr3 9173594 9174099 -218350479 - MER44D DNA MER2_type 0 605 1 914 249 72 16 chr3 9174099 9174388 -218350190 + MER113 DNA MER1_type? 80 396 -125 450 296 101 5 chr3 9175009 9175198 -218349380 - L3 LINE CR1 -97 1480 1274 225 192 19 19 chr3 9175934 9175986 -218348592 + GA-rich Low_complexity Low_complexity 1 52 0 2276 161 57 0 chr3 9176197 9176602 -218347976 + MSTA LTR MaLR 1 428 0 7899 183 71 7 chr3 9176602 9178140 -218346438 + MSTA-int LTR MaLR 1 1637 -14 2316 170 39 0 chr3 9178164 9178576 -218346002 + MSTA LTR MaLR 1 428 0 537 317 31 9 chr3 9179245 9179469 -218345109 - MER110 LTR ERV1 -93 398 170 241 282 42 0 chr3 9179559 9179630 -218344948 - MER110 LTR ERV1 -317 174 101 985 86 43 0 chr3 9180037 9180177 -218344401 - AluY SINE Alu 0 311 166 447 267 26 10 chr3 9180208 9180396 -218344182 - MER5B DNA MER1_type 0 178 12 267 368 63 45 chr3 9180537 9181134 -218343444 - L2 LINE L2 -167 3105 2489 1616 171 0 0 chr3 9182062 9182337 -218342241 + L1MC1 LINE L1 6058 6332 -1 233 372 47 17 chr3 9182706 9182841 -218341737 + MIR SINE MIR 13 156 -106 9082 108 12 2 chr3 9182841 9184115 -218340463 + HSMAR1 DNA Mariner 1 1287 0 233 372 47 17 chr3 9184115 9184151 -218340427 + MIR SINE MIR 156 189 -73 270 308 98 35 chr3 9184181 9184324 -218340254 + MIR3 SINE MIR 50 201 -7 2337 90 0 0 chr3 9184658 9184946 -218339632 + AluSc SINE Alu 5 292 -17 639 158 48 24 chr3 9184953 9185118 -218339460 - MER53 DNA DNA -19 170 2 294 300 25 56 chr3 9186209 9186369 -218338209 + MIR SINE MIR 64 218 -44 530 284 88 77 chr3 9187611 9187963 -218336615 - L2 LINE L2 -14 3299 2944 26 0 0 0 chr3 9189069 9189095 -218335483 + AT_rich Low_complexity Low_complexity 1 26 0 481 309 104 54 chr3 9189187 9189611 -218334967 - MLT1K LTR MaLR -43 545 101 384 298 19 10 chr3 9189761 9189897 -218334681 - MIR SINE MIR -68 140 6 2697 26 3 0 chr3 9190609 9190919 -218333659 - AluY SINE Alu 0 311 1 345 272 173 25 chr3 9191002 9191164 -218333414 - MER5A DNA MER1_type 0 189 4 199 322 132 16 chr3 9192654 9192775 -218331803 - MIR SINE MIR -109 153 19 217 304 0 14 chr3 9192944 9193013 -218331565 + GA-rich Low_complexity Low_complexity 3 70 0 7415 32 2 0 chr3 9193307 9194496 -218330082 - L1PA4 LINE L1 -6 6149 4960 243 200 24 12 chr3 9194663 9194748 -218329830 + CT-rich Low_complexity Low_complexity 3 88 0 1931 132 60 0 chr3 9195058 9195339 -218329239 + AluSx SINE Alu 1 298 -14 27 29 0 0 chr3 9195792 9195826 -218328752 + AT_rich Low_complexity Low_complexity 1 34 0 387 0 0 0 chr3 9195841 9195884 -218328694 + (TA)n Simple_repeat Simple_repeat 1 43 0 214 244 0 0 chr3 9196006 9196047 -218328531 - L2 LINE L2 -48 3265 3225 206 160 20 0 chr3 9196105 9196155 -218328423 + (TA)n Simple_repeat Simple_repeat 1 51 0 1522 174 144 17 chr3 9196436 9196797 -218327781 - MLT1D LTR MaLR -2 503 97 203 203 16 0 chr3 9197110 9197174 -218327404 + (TA)n Simple_repeat Simple_repeat 2 66 0 21 57 0 0 chr3 9197683 9197718 -218326860 + AT_rich Low_complexity Low_complexity 1 35 0 1583 266 53 21 chr3 9197718 9197758 -218326820 + L1MDb LINE L1 61 98 -6311 1585 210 48 11 chr3 9197758 9198110 -218326468 - MLT1A1 LTR MaLR 0 365 1 1583 266 53 21 chr3 9198110 9198634 -218325944 + L1MDb LINE L1 98 643 -5766 352 327 22 54 chr3 9198621 9198849 -218325729 + L1MDb LINE L1 406 650 -5759 * 590 279 21 37 chr3 9198880 9199070 -218325508 + L1MDb LINE L1 661 847 -5562 1647 224 72 93 chr3 9199074 9199931 -218324647 + L1MDb LINE L1 914 1752 -4654 490 275 25 63 chr3 9199976 9200260 -218324318 - L1MDa LINE L1 -4369 2171 1899 3518 234 31 75 chr3 9200272 9201899 -218322679 + L1MDb LINE L1 2560 4114 -2292 2234 119 3 0 chr3 9202334 9202644 -218321934 - AluSp SINE Alu -2 311 1 73 32 0 0 chr3 9203414 9203508 -218321070 + AT_rich Low_complexity Low_complexity 1 94 0 1424 239 58 3 chr3 9203519 9203899 -218320679 + L1MDb LINE L1 4099 4499 -1907 880 281 4 28 chr3 9204134 9204383 -218320195 + MLT1E LTR MaLR 351 593 0 210 71 0 0 chr3 9204786 9204814 -218319764 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 315 0 0 0 chr3 9204875 9204910 -218319668 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1157 101 6 24 chr3 9204916 9205085 -218319493 - AluY SINE Alu -145 166 1 21 36 0 0 chr3 9206590 9206618 -218317960 + AT_rich Low_complexity Low_complexity 1 28 0 419 242 74 0 chr3 9207614 9207709 -218316869 - MLT1H LTR MaLR -315 234 133 27 0 0 0 chr3 9208193 9208220 -218316358 + AT_rich Low_complexity Low_complexity 1 27 0 731 289 7 49 chr3 9209099 9209403 -218315175 + L1PA15 LINE L1 1280 1570 -5217 293 259 12 0 chr3 9209401 9209482 -218315096 + L1PA15 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 9209480 9209561 -218315017 + L1PA15 LINE L1 1489 1570 -5217 * 269 272 12 0 chr3 9209559 9209640 -218314938 + L1PA15 LINE L1 1489 1570 -5217 269 272 12 0 chr3 9209638 9209719 -218314859 + L1PA15 LINE L1 1489 1570 -5217 269 272 12 0 chr3 9209717 9209798 -218314780 + L1PA15 LINE L1 1489 1570 -5217 * 15280 210 21 16 chr3 9209796 9214282 -218310296 + L1PA15 LINE L1 1489 6012 -804 2105 126 3 0 chr3 9214282 9214576 -218310002 + AluSg SINE Alu 2 296 -14 15280 210 21 16 chr3 9214576 9215383 -218309195 + L1PA15 LINE L1 6012 6813 -3 32 43 0 0 chr3 9215407 9215453 -218309125 + AT_rich Low_complexity Low_complexity 1 46 0 386 286 57 65 chr3 9216378 9216623 -218307955 + MLT1L LTR MaLR 129 371 -244 409 129 0 0 chr3 9217649 9217719 -218306859 - L1PB3 LINE L1 -2 6152 6083 4309 138 6 6 chr3 9217950 9218623 -218305955 - L1PB3 LINE L1 -45 6109 5437 1490 214 20 23 chr3 9218616 9219008 -218305570 + L1P LINE L1 4958 5348 -798 * 574 131 0 0 chr3 9219009 9219093 -218305485 - AluS SINE Alu -228 84 1 506 338 46 9 chr3 9219355 9219574 -218305004 - MIR SINE MIR -27 235 9 189 0 0 0 chr3 9219829 9219850 -218304728 + (TG)n Simple_repeat Simple_repeat 2 22 0 358 265 29 37 chr3 9220529 9220665 -218303913 - MLT1K LTR MaLR -8 580 446 499 275 70 31 chr3 9221504 9221733 -218302845 - L2 LINE L2 -4 3309 3072 180 394 16 37 chr3 9221905 9222093 -218302485 + L2 LINE L2 2988 3171 -142 412 173 71 0 chr3 9222099 9222267 -218302311 + (TA)n Simple_repeat Simple_repeat 1 180 0 * 414 127 58 58 chr3 9222229 9222402 -218302176 + (TATAA)n Simple_repeat Simple_repeat 5 177 0 430 287 31 8 chr3 9222591 9222720 -218301858 + L2 LINE L2 3173 3304 -9 201 328 172 40 chr3 9222750 9222924 -218301654 + MIR SINE MIR 4 200 -62 208 219 0 62 chr3 9223009 9223073 -218301505 - L2 LINE L2 0 3313 3254 21 36 0 0 chr3 9224017 9224045 -218300533 + AT_rich Low_complexity Low_complexity 1 28 0 305 24 24 0 chr3 9224045 9224087 -218300491 + (TC)n Simple_repeat Simple_repeat 2 44 0 826 227 13 40 chr3 9224984 9225209 -218299369 + MER20 DNA MER1_type 1 219 0 189 0 0 0 chr3 9225358 9225379 -218299199 + (TA)n Simple_repeat Simple_repeat 2 22 0 1761 184 7 3 chr3 9225379 9225673 -218298905 - AluJb SINE Alu -17 295 1 750 201 84 11 chr3 9226463 9226642 -218297936 + LTR47A LTR ERVL 261 452 0 521 173 18 125 chr3 9227041 9227068 -218297510 - MER5B DNA MER1_type -1 177 149 1468 191 71 31 chr3 9227068 9227419 -218297159 + MLT1A1 LTR MaLR 1 365 0 521 173 18 125 chr3 9227419 9227559 -218297019 - MER5B DNA MER1_type -29 149 28 225 65 0 0 chr3 9227624 9227655 -218296923 + (TC)n Simple_repeat Simple_repeat 2 32 0 335 282 116 39 chr3 9227726 9227907 -218296671 - MIR SINE MIR 0 262 68 216 298 0 0 chr3 9227982 9228039 -218296539 + MER5B DNA MER1_type 2 58 -120 7600 201 41 13 chr3 9228046 9228615 -218295963 + L1MC3 LINE L1 6059 6610 -1175 3660 68 0 6 chr3 9228615 9229098 -218295480 - L1PA8 LINE L1 0 6172 5693 7600 201 41 13 chr3 9229098 9230196 -218294382 + L1MC3 LINE L1 6610 7773 -12 341 250 29 58 chr3 9230245 9230349 -218294229 - MER5B DNA MER1_type -71 107 7 2539 49 7 0 chr3 9230589 9230896 -218293682 + AluY SINE Alu 2 310 -1 300 91 0 0 chr3 9231870 9231914 -218292664 + (TG)n Simple_repeat Simple_repeat 1 44 0 1974 169 31 6 chr3 9231916 9232271 -218292307 - THE1B LTR MaLR 0 364 1 247 281 0 0 chr3 9232355 9232412 -218292166 - MIR3 SINE MIR -50 158 102 771 312 0 14 chr3 9233789 9234010 -218290568 + MIR SINE MIR 45 262 0 21 57 0 0 chr3 9234441 9234476 -218290102 + AT_rich Low_complexity Low_complexity 1 35 0 2089 148 14 6 chr3 9237002 9237361 -218287217 - L1MA5 LINE L1 -478 5822 5461 2376 172 9 13 chr3 9237365 9237825 -218286753 + L1MA5 LINE L1 5843 6300 0 1033 301 32 60 chr3 9238011 9238508 -218286070 + MLT1H LTR MaLR 1 549 0 3721 169 4 7 chr3 9238913 9239605 -218284973 + L1MB1 LINE L1 5479 6168 0 869 179 104 112 chr3 9239680 9239843 -218284735 - MER2 DNA MER2_type -1 344 181 2228 133 128 8 chr3 9239843 9240225 -218284353 - MSTA LTR MaLR 0 428 1 869 179 104 112 chr3 9240225 9240408 -218284170 - MER2 DNA MER2_type -164 181 1 195 311 14 0 chr3 9240438 9240512 -218284066 - MIR3 SINE MIR -12 196 122 223 308 0 15 chr3 9240881 9240946 -218283632 + L3b LINE CR1 1206 1269 -314 333 305 178 5 chr3 9242921 9243118 -218281460 + MIR SINE MIR 29 259 -3 1611 186 21 0 chr3 9243174 9243454 -218281124 + AluJo SINE Alu 1 286 -26 243 0 0 0 chr3 9243454 9243481 -218281097 + (TTAA)n Simple_repeat Simple_repeat 4 30 0 2331 106 0 0 chr3 9244815 9245127 -218279451 + AluSx SINE Alu 1 312 0 1939 130 0 23 chr3 9245763 9246063 -218278515 - MER4A LTR ERV1 0 664 372 586 133 0 10 chr3 9246116 9246214 -218278364 - MER4A LTR ERV1 -566 98 2 475 244 1 22 chr3 9247157 9247267 -218277311 + MLT1E LTR MaLR 58 163 -404 214 181 0 24 chr3 9247267 9247350 -218277228 + (TA)n Simple_repeat Simple_repeat 1 81 0 1746 224 38 33 chr3 9247374 9247767 -218276811 + MLT1E LTR MaLR 199 593 0 1803 131 60 0 chr3 9247964 9248253 -218276325 - AluSx SINE Alu 0 305 1 566 261 48 52 chr3 9249214 9249463 -218275115 + LTR16A1 LTR ERVL 209 456 -1 21 0 0 0 chr3 9249834 9249855 -218274723 + AT_rich Low_complexity Low_complexity 1 21 0 232 286 0 0 chr3 9250004 9250067 -218274511 + (CA)n Simple_repeat Simple_repeat 2 64 0 207 100 0 0 chr3 9251002 9251032 -218273546 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 764 160 8 8 chr3 9251780 9251911 -218272667 - FLAM_C SINE Alu 0 133 3 353 295 38 0 chr3 9253064 9253169 -218271409 - MIR SINE MIR -104 158 50 321 277 52 59 chr3 9254495 9254769 -218269809 + L1ME4a LINE L1 5634 5908 -213 2012 141 10 0 chr3 9254769 9255066 -218269512 + AluSx SINE Alu 1 300 -12 321 277 52 59 chr3 9255066 9255108 -218269470 + L1ME4a LINE L1 5908 5949 -172 3134 167 86 28 chr3 9255108 9255795 -218268783 - LTR8A LTR ERV1 0 727 1 321 277 52 59 chr3 9255795 9255899 -218268679 + L1ME4a LINE L1 5949 6052 -69 439 349 108 4 chr3 9256503 9256781 -218267797 + L2 LINE L2 211 517 -2797 615 340 199 16 chr3 9256875 9257648 -218266930 + L2 LINE L2 982 1896 -1418 36 77 0 0 chr3 9258019 9258097 -218266481 + AT_rich Low_complexity Low_complexity 1 78 0 353 195 0 11 chr3 9258286 9258373 -218266205 + CT-rich Low_complexity Low_complexity 2 87 0 2448 63 0 0 chr3 9258885 9259187 -218265391 + AluY SINE Alu 1 302 -9 2287 83 0 13 chr3 9259584 9259884 -218264694 + AluSq SINE Alu 1 296 -17 220 211 42 28 chr3 9261250 9261321 -218263257 + (CAGAGA)n Simple_repeat Simple_repeat 4 75 0 23 33 0 0 chr3 9261479 9261509 -218263069 + AT_rich Low_complexity Low_complexity 1 30 0 311 313 99 15 chr3 9261803 9261934 -218262644 - MER5A DNA MER1_type -1 188 47 280 283 132 9 chr3 9261848 9261954 -218262624 + MER5A DNA MER1_type 68 186 -3 * 334 310 35 35 chr3 9261984 9262100 -218262478 + MIR SINE MIR 30 145 -63 471 143 36 0 chr3 9262108 9262192 -218262386 + L1MA5 LINE L1 6209 6295 -5 31 58 0 0 chr3 9262313 9262365 -218262213 + AT_rich Low_complexity Low_complexity 1 52 0 1912 178 3 23 chr3 9263832 9264186 -218260392 + MER7A DNA MER2_type 2 346 0 21 57 0 0 chr3 9264317 9264352 -218260226 + AT_rich Low_complexity Low_complexity 1 35 0 4752 182 26 40 chr3 9264662 9265553 -218259025 + L1MA4 LINE L1 4422 5325 -975 1944 131 40 0 chr3 9265553 9265850 -218258728 + AluSx SINE Alu 1 309 -3 4752 182 26 40 chr3 9265850 9266633 -218257945 + L1MA4 LINE L1 5325 6081 -219 2184 102 7 3 chr3 9266633 9266927 -218257651 + AluSx SINE Alu 1 295 -17 4752 182 26 40 chr3 9266927 9267138 -218257440 + L1MA4 LINE L1 6081 6294 -6 771 314 89 14 chr3 9267153 9267637 -218256941 + HAL1b LINE L1 305 824 -524 251 324 57 27 chr3 9268122 9268600 -218255978 + L1ME4a LINE L1 4168 4659 -1487 306 290 41 14 chr3 9268707 9268852 -218255726 + L1ME4a LINE L1 4804 4952 -1194 302 239 67 110 chr3 9269066 9269275 -218255303 + L1ME4a LINE L1 5259 5458 -2350 318 310 57 78 chr3 9269286 9269567 -218255011 + L1ME4a LINE L1 5509 5783 -2025 419 264 183 10 chr3 9270695 9270899 -218253679 + MIR SINE MIR 11 248 -14 198 0 0 0 chr3 9270918 9270940 -218253638 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2921 86 8 0 chr3 9270940 9271337 -218253241 - L1PA10 LINE L1 -20 6148 5749 219 69 0 0 chr3 9273018 9273047 -218251531 + (A)n Simple_repeat Simple_repeat 1 29 0 405 293 20 7 chr3 9273076 9273223 -218251355 - MER113 DNA MER1_type? -4 517 369 1114 66 7 0 chr3 9273225 9273377 -218251201 + L1PA13 LINE L1 6011 6163 0 481 301 71 0 chr3 9273380 9273576 -218251002 - MER63A DNA MER1_type 0 210 1 41706 39 23 1 chr3 9273817 9279779 -218244799 - L1PA3 LINE L1 0 6155 64 21 0 0 0 chr3 9279817 9279838 -218244740 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr3 9281355 9281380 -218243198 + (GA)n Simple_repeat Simple_repeat 2 26 0 379 292 50 8 chr3 9281492 9281612 -218242966 - MIR SINE MIR -57 151 27 273 330 0 0 chr3 9283845 9283939 -218240639 - MIR SINE MIR 0 262 169 1069 187 38 14 chr3 9284525 9284734 -218239844 - MER20 DNA MER1_type 0 219 6 402 266 21 63 chr3 9284849 9284992 -218239586 - MER5A DNA MER1_type 0 189 53 246 116 0 0 chr3 9284992 9285035 -218239543 + (T)n Simple_repeat Simple_repeat 1 43 0 2458 60 0 0 chr3 9285242 9285544 -218239034 - AluY SINE Alu -9 302 1 1405 111 0 44 chr3 9285820 9286045 -218238533 - L1PA16 LINE L1 -2 6164 5950 230 277 60 60 chr3 9287969 9288004 -218236574 + L1ME4a LINE L1 5955 5989 -132 2134 126 7 3 chr3 9288004 9288314 -218236264 + AluSx SINE Alu 2 312 0 230 277 60 60 chr3 9288314 9288444 -218236134 + L1ME4a LINE L1 5988 6120 -1 745 289 82 40 chr3 9288721 9289340 -218235238 - L2 LINE L2 -39 3274 2630 536 211 80 44 chr3 9289363 9289563 -218235015 + MER58 DNA MER1_type 1 2420 0 813 253 39 52 chr3 9289652 9289960 -218234618 - L2 LINE L2 -710 2604 2301 188 167 0 19 chr3 9290059 9290113 -218234465 + (TAA)n Simple_repeat Simple_repeat 3 55 0 944 265 89 29 chr3 9290171 9290552 -218234026 + LTR16B LTR ERVL 27 430 -34 271 301 11 32 chr3 9290612 9290705 -218233873 - MIR SINE MIR -70 192 102 933 213 32 19 chr3 9290846 9291062 -218233516 + MER20 DNA MER1_type 1 219 0 21 36 0 0 chr3 9291831 9291859 -218232719 + AT_rich Low_complexity Low_complexity 1 28 0 495 252 99 0 chr3 9292662 9292793 -218231785 - MIR SINE MIR -87 175 32 212 376 0 12 chr3 9292979 9293064 -218231514 + MIR3 SINE MIR 94 177 -31 804 139 115 171 chr3 9293096 9293383 -218231195 + AluJb SINE Alu 42 312 0 1275 97 20 5 chr3 9293445 9293641 -218230937 - L1MA3 LINE L1 0 6305 6107 2297 147 16 8 chr3 9294246 9294634 -218229944 + L1MC1 LINE L1 5943 6333 0 33 0 0 0 chr3 9297065 9297098 -218227480 + AT_rich Low_complexity Low_complexity 1 33 0 383 231 78 111 chr3 9297129 9297372 -218227206 - MLT1K LTR MaLR 0 588 354 4347 188 36 4 chr3 9297459 9298359 -218226219 - L1MC2 LINE L1 -9 6335 5408 213 65 0 0 chr3 9301222 9301253 -218223325 + (T)n Simple_repeat Simple_repeat 1 31 0 1962 192 31 17 chr3 9302020 9302442 -218222136 + MSTA LTR MaLR 1 428 0 273 335 115 0 chr3 9302500 9302718 -218221860 + L1ME LINE L1 5549 5791 -330 3721 151 55 8 chr3 9302857 9303609 -218220969 - L1MA4 LINE L1 -323 5977 5190 599 245 45 39 chr3 9303624 9303680 -218220898 - MLT1H LTR MaLR -379 170 116 2016 108 21 10 chr3 9303680 9303968 -218220610 + AluSq SINE Alu 8 298 -15 599 245 45 39 chr3 9303968 9304066 -218220512 - MLT1H LTR MaLR -433 116 15 225 225 0 0 chr3 9304576 9304616 -218219962 + MIR SINE MIR 82 121 -87 24 32 0 0 chr3 9304999 9305030 -218219548 + AT_rich Low_complexity Low_complexity 1 31 0 1398 124 0 5 chr3 9305533 9305734 -218218844 - AluSc SINE Alu 0 309 110 24 0 0 0 chr3 9305994 9306018 -218218560 + AT_rich Low_complexity Low_complexity 1 24 0 752 355 60 48 chr3 9306479 9307366 -218217212 - L2 LINE L2 -219 3053 2158 386 335 22 54 chr3 9307366 9307551 -218217027 - MER5A DNA MER1_type -1 188 10 397 338 87 27 chr3 9307559 9308009 -218216569 - L2 LINE L2 -1158 2156 1680 2125 241 27 46 chr3 9308068 9308137 -218216441 - L1MB7 LINE L1 0 6184 6115 1943 75 113 0 chr3 9308137 9308403 -218216175 - AluSg SINE Alu -13 297 2 2125 241 27 46 chr3 9308403 9308989 -218215589 - L1MB7 LINE L1 -69 6115 5541 384 256 65 60 chr3 9309436 9309604 -218214974 + MIR SINE MIR 80 248 -14 415 285 85 60 chr3 9311486 9311686 -218212892 - MIR SINE MIR -1 261 57 1769 137 22 4 chr3 9311785 9312063 -218212515 + AluSx SINE Alu 15 297 -15 21 0 0 0 chr3 9312113 9312134 -218212444 + AT_rich Low_complexity Low_complexity 1 21 0 2152 106 0 48 chr3 9312743 9313055 -218211523 - AluSq SINE Alu -16 297 1 453 282 60 46 chr3 9314597 9314766 -218209812 + MLT1J2 LTR MaLR 58 234 -212 663 123 123 0 chr3 9314766 9314896 -218209682 - L1PB2 LINE L1 0 6151 6006 453 282 60 46 chr3 9314896 9314981 -218209597 + MLT1J2 LTR MaLR 234 316 -130 194 304 72 0 chr3 9315123 9315192 -218209386 - L2 LINE L2 -13 3259 3186 2092 138 3 3 chr3 9315594 9315898 -218208680 + AluSx SINE Alu 1 304 -8 245 271 43 57 chr3 9316029 9316169 -218208409 - L1ME3A LINE L1 -6 6164 6027 398 231 133 6 chr3 9316302 9316475 -218208103 - L1ME3A LINE L1 -232 5938 5744 351 284 134 83 chr3 9316965 9317350 -218207228 + L2 LINE L2 2906 3312 -1 282 119 30 15 chr3 9317357 9317424 -218207154 + GA-rich Low_complexity Low_complexity 3 70 0 329 291 27 27 chr3 9319311 9319421 -218205157 - MIR3 SINE MIR -1 207 98 217 235 76 101 chr3 9319439 9319558 -218205020 - L2 LINE L2 0 3313 3198 495 342 82 0 chr3 9319628 9319859 -218204719 + MIR SINE MIR 1 250 -12 288 153 124 146 chr3 9320089 9320226 -218204352 + MER91B DNA MER1_type 31 164 -26 1037 274 125 63 chr3 9320344 9320855 -218203723 - MLT1G1 LTR MaLR -5 590 48 205 299 0 15 chr3 9320901 9320968 -218203610 + L2 LINE L2 3248 3313 0 1431 183 70 8 chr3 9322359 9322616 -218201962 - AluJb SINE Alu -39 273 1 2157 124 0 3 chr3 9323198 9323496 -218201082 - AluSg SINE Alu -13 297 1 210 303 13 13 chr3 9323551 9323627 -218200951 + L2 LINE L2 3188 3263 -9 2458 151 2 28 chr3 9323706 9324129 -218200449 - MSTB1 LTR MaLR -20 412 1 252 0 0 0 chr3 9325393 9325421 -218199157 + (A)n Simple_repeat Simple_repeat 1 28 0 1479 144 0 132 chr3 9326771 9327098 -218197480 + AluJo SINE Alu 11 294 -18 643 291 119 61 chr3 9327102 9327151 -218197427 - MLT1I LTR MaLR -45 364 319 2192 129 3 0 chr3 9327151 9327462 -218197116 - AluSx SINE Alu 0 312 1 643 291 119 61 chr3 9327462 9327756 -218196822 - MLT1I LTR MaLR -90 319 1 2053 188 62 7 chr3 9327778 9328182 -218196396 - MSTB LTR MaLR 0 426 1 302 311 39 10 chr3 9328650 9328753 -218195825 + L2 LINE L2 3196 3301 -12 360 125 0 0 chr3 9330408 9330472 -218194106 + (CA)n Simple_repeat Simple_repeat 2 65 0 294 200 0 0 chr3 9330687 9330742 -218193836 - L2 LINE L2 0 3313 3259 208 309 11 32 chr3 9331084 9331178 -218193400 - MIR3 SINE MIR -7 201 110 449 70 0 14 chr3 9332247 9332318 -218192260 + (TAGA)n Simple_repeat Simple_repeat 4 73 0 2158 126 0 3 chr3 9332452 9332753 -218191825 - AluSx SINE Alu -12 300 1 22 70 0 0 chr3 9332799 9332842 -218191736 + AT_rich Low_complexity Low_complexity 1 43 0 383 360 29 6 chr3 9332995 9333170 -218191408 + MER5A DNA MER1_type 8 186 -3 283 271 90 71 chr3 9333276 9333431 -218191147 + MIR SINE MIR 41 198 -64 710 134 11 213 chr3 9334482 9334759 -218189819 - L1MA9 LINE L1 0 6312 6092 2124 102 3 3 chr3 9336443 9336728 -218187850 + AluSc SINE Alu 3 287 -22 367 218 0 32 chr3 9337461 9337585 -218186993 + CT-rich Low_complexity Low_complexity 1 120 0 181 275 120 93 chr3 9337601 9337859 -218186719 + L2 LINE L2 2995 3259 -54 6090 14 0 0 chr3 9338475 9339175 -218185403 - L1PA4 LINE L1 -202 5953 5254 1605 57 9 0 chr3 9339183 9339395 -218185183 + L1PA4 LINE L1 5942 6155 0 2101 121 3 3 chr3 9339794 9340092 -218184486 + AluSx SINE Alu 1 298 -14 185 310 17 17 chr3 9342365 9342423 -218182155 - L2 LINE L2 -26 3246 3189 190 296 19 0 chr3 9343330 9343384 -218181194 + L2 LINE L2 3210 3264 -8 36 62 0 0 chr3 9343434 9343498 -218181080 + AT_rich Low_complexity Low_complexity 1 64 0 289 281 31 31 chr3 9343508 9343604 -218180974 - MIR3 SINE MIR -26 182 87 1764 150 0 11 chr3 9343755 9344029 -218180549 + AluJb SINE Alu 1 271 -41 291 182 23 11 chr3 9344035 9344123 -218180455 + GA-rich Low_complexity Low_complexity 3 91 0 299 303 33 40 chr3 9344185 9344337 -218180241 - L2 LINE L2 -1034 2280 2130 2000 166 63 19 chr3 9344363 9344773 -218179805 - MSTC LTR MaLR 0 428 1 200 188 0 0 chr3 9345365 9345397 -218179181 + polypurine Low_complexity Low_complexity 4 35 0 1926 127 0 38 chr3 9345405 9345771 -218178807 + AluSx SINE Alu 11 365 0 950 288 82 63 chr3 9345879 9345996 -218178582 - MER34 LTR ERV1 0 542 429 1885 173 0 10 chr3 9345996 9346302 -218178276 - AluJb SINE Alu -7 305 3 950 288 82 63 chr3 9346302 9346711 -218177867 - MER34 LTR ERV1 -113 429 6 1435 193 62 94 chr3 9346905 9347130 -218177448 - MER34-int LTR ERV1 -165 6040 5809 2148 201 36 2 chr3 9347130 9347548 -218177030 - MSTB1 LTR MaLR 0 432 1 1435 193 62 94 chr3 9347548 9347940 -218176638 - MER34-int LTR ERV1 -396 5809 4190 1666 187 45 93 chr3 9347950 9348017 -218176561 - MER31-int LTR ERV1 -3609 1327 1258 2233 135 10 39 chr3 9348017 9348401 -218176177 + MER83C LTR ERV1 1 373 0 1666 187 45 93 chr3 9348401 9348905 -218175673 - MER31-int LTR ERV1 -3678 1258 783 2390 53 0 3 chr3 9349070 9349354 -218175224 + AluY SINE Alu 13 295 -16 207 0 0 0 chr3 9349901 9349924 -218174654 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1834 131 7 7 chr3 9349925 9350199 -218174379 - AluSx SINE Alu -36 276 3 613 264 51 43 chr3 9350281 9350481 -218174097 - MER34 LTR ERV1 0 542 338 2848 177 91 56 chr3 9350481 9351183 -218173395 + LTR8A LTR ERV1 1 727 0 613 264 51 43 chr3 9351183 9351217 -218173361 - MER34 LTR ERV1 -204 338 306 488 259 76 19 chr3 9351266 9351424 -218173154 - MER34 LTR ERV1 -375 167 1 1817 215 60 115 chr3 9352164 9352954 -218171624 + LTR1B LTR ERV1 1 746 -80 23 54 0 0 chr3 9353331 9353368 -218171210 + AT_rich Low_complexity Low_complexity 1 37 0 658 254 78 15 chr3 9353742 9353947 -218170631 - MER20 DNA MER1_type 0 219 2 510 302 15 25 chr3 9354798 9355000 -218169578 + MLT1K LTR MaLR 380 579 -9 2384 107 0 3 chr3 9355323 9355632 -218168946 - AluSc SINE Alu -1 308 1 300 361 106 18 chr3 9355635 9355862 -218168716 - MLT1K LTR MaLR -158 430 184 409 253 140 27 chr3 9356242 9356428 -218168150 - MIR SINE MIR -13 249 43 251 194 113 0 chr3 9356504 9356566 -218168012 - MER94 DNA DNA -65 69 1 2458 184 38 35 chr3 9356632 9356966 -218167612 - L1MC2 LINE L1 -11 7770 7439 1922 160 0 26 chr3 9356966 9357279 -218167299 - AluSx SINE Alu -7 305 1 2458 184 38 35 chr3 9357279 9357534 -218167044 - L1MC2 LINE L1 -342 7439 6137 425 275 8 8 chr3 9357555 9357686 -218166892 - L1ME2 LINE L1 -12 6152 6022 715 184 0 27 chr3 9357968 9358115 -218166463 + FLAM_C SINE Alu 1 143 0 2128 234 74 34 chr3 9358744 9359518 -218165060 - L1ME1 LINE L1 -4 6231 5427 515 182 0 0 chr3 9359669 9359757 -218164821 + AluJ/FLAM SINE Alu 1 88 -224 27 0 0 0 chr3 9359823 9359850 -218164728 + AT_rich Low_complexity Low_complexity 1 27 0 661 231 30 10 chr3 9359854 9360053 -218164525 - L1MB8 LINE L1 -1 6177 5975 799 281 90 19 chr3 9360141 9360237 -218164341 - L1ME1 LINE L1 -2701 3514 3426 1697 180 7 3 chr3 9360237 9360531 -218164047 - AluSx SINE Alu -14 298 4 799 281 90 19 chr3 9360531 9361131 -218163447 - L1ME1 LINE L1 -2789 3426 2768 480 222 11 43 chr3 9361129 9361314 -218163264 - L1ME1 LINE L1 -5265 1131 953 * 239 133 67 0 chr3 9361338 9361383 -218163195 - MLT1E2 LTR MaLR -42 584 537 621 210 122 39 chr3 9361398 9361579 -218162999 - MLT1E2 LTR MaLR -369 257 62 434 322 95 57 chr3 9361674 9362450 -218162128 - L1ME1 LINE L1 -5554 842 37 251 289 12 0 chr3 9362852 9362935 -218161643 + MARNA DNA Mariner 448 531 -55 627 272 38 22 chr3 9363495 9363679 -218160899 + MIR SINE MIR 8 194 -68 187 382 11 0 chr3 9363685 9363774 -218160804 + MIR SINE MIR 172 261 -1 285 360 0 9 chr3 9363792 9363906 -218160672 + MIR SINE MIR 136 248 -14 789 95 0 0 chr3 9364142 9364258 -218160320 + (TCCCC)n Simple_repeat Simple_repeat 4 119 0 988 183 17 6 chr3 9364258 9364433 -218160145 - AluJb SINE Alu -20 292 116 366 330 98 71 chr3 9364764 9364936 -218159642 - MLT1K LTR MaLR -34 554 388 2295 115 0 0 chr3 9364936 9365232 -218159346 - AluSx SINE Alu -12 300 5 366 330 98 71 chr3 9365232 9365568 -218159010 - MLT1K LTR MaLR -200 388 32 214 345 0 35 chr3 9366177 9366264 -218158314 + MIR SINE MIR 104 187 -75 34 42 0 0 chr3 9366343 9366391 -218158187 + AT_rich Low_complexity Low_complexity 1 48 0 251 282 12 0 chr3 9366408 9366493 -218158085 - MLT1L LTR MaLR -13 602 517 280 333 89 37 chr3 9367807 9367942 -218156636 - L2 LINE L2 -6 3266 3125 299 301 63 63 chr3 9368454 9368660 -218155918 - MLT1K LTR MaLR -90 498 293 346 290 21 21 chr3 9368838 9368931 -218155647 + MER91B DNA MER1_type 97 189 -1 297 339 17 0 chr3 9368951 9369069 -218155509 - MLT1K LTR MaLR -319 269 150 252 0 0 0 chr3 9369126 9369154 -218155424 + (A)n Simple_repeat Simple_repeat 1 28 0 183 100 0 0 chr3 9369179 9369209 -218155369 + (CAA)n Simple_repeat Simple_repeat 2 31 0 404 319 8 0 chr3 9369349 9369468 -218155110 - MIR3 SINE MIR -23 185 66 181 161 0 54 chr3 9370708 9370764 -218153814 + GA-rich Low_complexity Low_complexity 1 53 0 277 318 16 8 chr3 9372754 9372880 -218151698 + CT-rich Low_complexity Low_complexity 2 128 0 353 310 0 0 chr3 9375945 9376032 -218148546 + MIR SINE MIR 50 136 -72 388 347 43 20 chr3 9376519 9376819 -218147759 + MLT1K LTR MaLR 200 506 -82 508 270 157 22 chr3 9377735 9377965 -218146613 - MIR SINE MIR 0 262 2 605 254 42 31 chr3 9378862 9379055 -218145523 + MIR SINE MIR 12 206 -56 285 29 0 0 chr3 9379261 9379295 -218145283 + (TCTA)n Simple_repeat Simple_repeat 4 37 0 248 174 0 14 chr3 9379296 9379365 -218145213 + GA-rich Low_complexity Low_complexity 1 68 0 210 288 76 68 chr3 9379482 9379600 -218144978 + MIR SINE MIR 16 134 -128 207 300 125 0 chr3 9379614 9379694 -218144884 - L2 LINE L2 -15 3298 3209 266 247 41 0 chr3 9379694 9379767 -218144811 + CT-rich Low_complexity Low_complexity 4 79 0 1431 271 106 37 chr3 9379771 9380638 -218143940 - L2 LINE L2 -94 3219 2295 197 288 0 0 chr3 9380648 9380707 -218143871 + MIR SINE MIR 134 192 -70 24 32 0 0 chr3 9381016 9381047 -218143531 + AT_rich Low_complexity Low_complexity 1 31 0 223 284 0 0 chr3 9382039 9382106 -218142472 + CT-rich Low_complexity Low_complexity 1 67 0 4967 44 7 2 chr3 9382160 9382774 -218141804 - L1PA7 LINE L1 -2 6152 5536 1987 107 10 17 chr3 9382774 9383065 -218141513 - AluSx SINE Alu -23 289 1 728 280 58 4 chr3 9383091 9383316 -218141262 + MIR SINE MIR 1 237 -25 630 292 67 17 chr3 9383677 9383917 -218140661 + MIR SINE MIR 5 256 -6 448 269 126 40 chr3 9384164 9384387 -218140191 - MIR SINE MIR -16 246 5 2354 109 22 11 chr3 9384975 9385332 -218139246 + THE1B LTR MaLR 1 361 -3 22 35 0 0 chr3 9385540 9385569 -218139009 + AT_rich Low_complexity Low_complexity 1 29 0 2158 122 0 0 chr3 9385678 9385974 -218138604 + AluSx SINE Alu 1 296 -16 2264 116 0 0 chr3 9386292 9386594 -218137984 - AluSx SINE Alu -10 302 1 234 172 103 17 chr3 9386797 9386855 -218137723 - L2 LINE L2 0 3313 3251 396 0 0 0 chr3 9387502 9387546 -218137032 + (CA)n Simple_repeat Simple_repeat 1 44 0 369 43 0 0 chr3 9388062 9388109 -218136469 + (TG)n Simple_repeat Simple_repeat 2 48 0 249 340 156 21 chr3 9388335 9388476 -218136102 - MER5A DNA MER1_type 0 189 30 735 211 149 0 chr3 9388480 9388641 -218135937 - MER5A DNA MER1_type 0 189 5 449 290 158 6 chr3 9388775 9388958 -218135620 - MIR SINE MIR -32 230 20 592 169 128 12 chr3 9388969 9389141 -218135437 - L1MA7 LINE L1 -2 6289 6098 196 267 0 33 chr3 9389208 9389268 -218135310 - L2 LINE L2 -218 3054 2997 26 74 0 0 chr3 9390584 9390638 -218133940 + AT_rich Low_complexity Low_complexity 1 54 0 3179 71 7 0 chr3 9390822 9391247 -218133331 - L1PA10 LINE L1 0 6168 5741 989 93 42 3 chr3 9391248 9391440 -218133138 + L1P4 LINE L1 5254 5430 -738 297 0 0 0 chr3 9391614 9391647 -218132931 + (TG)n Simple_repeat Simple_repeat 2 34 0 800 230 0 0 chr3 9392091 9392256 -218132322 + FRAM SINE Alu 1 164 -12 351 298 132 38 chr3 9392384 9392931 -218131647 - L1ME4a LINE L1 -204 5917 5320 35 78 0 0 chr3 9392953 9393030 -218131548 + AT_rich Low_complexity Low_complexity 1 77 0 374 253 24 0 chr3 9393964 9394047 -218130531 + L3 LINE CR1 1393 1477 -100 218 262 0 0 chr3 9394236 9394278 -218130300 + MIR SINE MIR 78 119 -89 2270 120 0 0 chr3 9394282 9394590 -218129988 - AluSg SINE Alu -2 308 1 2542 198 2 10 chr3 9394795 9395285 -218129293 - MER66B LTR ERV1 0 486 1 1158 161 55 0 chr3 9395642 9395788 -218128790 - L1MA9 LINE L1 -2 6310 6145 234 62 0 0 chr3 9395788 9395820 -218128758 + (TG)n Simple_repeat Simple_repeat 1 32 0 1158 161 55 0 chr3 9395820 9395909 -218128669 - L1MA9 LINE L1 -167 6145 6062 1675 93 4 39 chr3 9395945 9396202 -218128376 + L1PA6 LINE L1 5907 6154 0 249 33 0 0 chr3 9396463 9396493 -218128085 + (TAA)n Simple_repeat Simple_repeat 1 30 0 285 258 89 57 chr3 9396516 9396640 -218127938 - MIR SINE MIR -44 218 91 32510 38 0 0 chr3 9396925 9401837 -218122741 - L1PA3 LINE L1 -3 6152 1239 313 354 31 15 chr3 9401837 9401967 -218122611 + LTR67 LTR ERVL 110 241 -316 315 284 9 0 chr3 9402098 9402207 -218122371 + LTR67 LTR ERVL 435 544 -13 318 50 0 0 chr3 9402673 9402713 -218121865 + (ATG)n Simple_repeat Simple_repeat 2 41 0 206 338 188 6 chr3 9402722 9402882 -218121696 - MIR SINE MIR -10 252 64 336 200 0 0 chr3 9404225 9404305 -218120273 + (TA)n Simple_repeat Simple_repeat 2 81 0 441 287 54 0 chr3 9405154 9405283 -218119295 - MIR SINE MIR -68 194 59 802 209 70 0 chr3 9406940 9407112 -218117466 + MER5A DNA MER1_type 4 187 -2 300 258 281 6 chr3 9407143 9407321 -218117257 + MIR SINE MIR 34 260 -2 722 304 25 21 chr3 9407596 9407833 -218116745 - LTR33 LTR ERVL -239 282 45 625 179 172 13 chr3 9408391 9408542 -218116036 + FRAM SINE Alu 2 176 0 291 317 63 0 chr3 9408635 9408777 -218115801 + MIR SINE MIR 55 205 -57 267 336 69 8 chr3 9408839 9408970 -218115608 - MIR SINE MIR 0 262 124 206 360 0 20 chr3 9409510 9409610 -218114968 - MIR SINE MIR -66 142 45 2405 82 0 28 chr3 9411010 9411328 -218113250 + AluSc SINE Alu 1 309 0 235 258 45 0 chr3 9411444 9411533 -218113045 + T-rich Low_complexity Low_complexity 4 96 0 288 0 0 0 chr3 9412543 9412575 -218112003 + (CA)n Simple_repeat Simple_repeat 2 33 0 469 305 97 26 chr3 9413212 9413707 -218110871 - L1ME LINE L1 -378 5784 5255 510 298 94 12 chr3 9414003 9414174 -218110404 + MIR SINE MIR 11 195 -67 368 314 66 62 chr3 9414319 9414416 -218110162 - L1ME LINE L1 -1306 4840 4745 1388 227 14 7 chr3 9414416 9414711 -218109867 - AluJo SINE Alu -15 297 1 368 314 66 62 chr3 9414711 9415647 -218108931 - L1ME LINE L1 -1401 4745 3803 338 275 169 38 chr3 9415666 9415826 -218108752 - MLT1A1 LTR MaLR 0 549 369 21 0 0 0 chr3 9416512 9416533 -218108045 + AT_rich Low_complexity Low_complexity 1 21 0 877 163 0 6 chr3 9416544 9416710 -218107868 - L1MA10 LINE L1 -3 6331 6167 710 199 8 0 chr3 9416766 9416897 -218107681 - FLAM_C SINE Alu -1 132 1 207 350 48 10 chr3 9417168 9417271 -218107307 - MIR3 SINE MIR -1 207 101 322 336 28 28 chr3 9418152 9418295 -218106283 - MIR3 SINE MIR -61 147 5 260 363 44 0 chr3 9419130 9419243 -218105335 + L2 LINE L2 3155 3272 0 396 298 29 41 chr3 9419941 9420112 -218104466 - MLT1J2 LTR MaLR -3 447 279 474 252 9 0 chr3 9420313 9420424 -218104154 + FLAM_A SINE Alu 16 127 -15 217 299 13 0 chr3 9420916 9420993 -218103585 - L3b LINE CR1 -325 1258 1181 442 244 25 44 chr3 9421890 9422050 -218102528 + MER103 DNA DNA 8 164 -2 263 378 61 6 chr3 9422133 9422313 -218102265 - L3 LINE CR1 -13 1564 1375 2213 101 3 0 chr3 9424105 9424393 -218100185 - AluSg SINE Alu -21 289 1 314 308 140 0 chr3 9425810 9425917 -218098661 - L2 LINE L2 -1 3312 3191 1685 191 62 0 chr3 9426146 9426471 -218098107 - MLT1A1 LTR MaLR -20 345 1 602 262 107 5 chr3 9426737 9426924 -218097654 + MIR SINE MIR 56 261 -1 242 284 30 0 chr3 9427839 9427906 -218096672 - MIR SINE MIR -66 142 74 419 248 17 26 chr3 9428149 9428266 -218096312 + MIR SINE MIR 45 160 -102 264 305 0 0 chr3 9428279 9428338 -218096240 - L2 LINE L2 0 3272 3214 264 250 89 27 chr3 9428516 9428628 -218095950 + MIR SINE MIR 84 202 -60 1985 116 0 31 chr3 9428878 9429200 -218095378 - AluSx SINE Alu 0 313 1 24 32 0 0 chr3 9429453 9429484 -218095094 + AT_rich Low_complexity Low_complexity 1 31 0 1952 131 7 10 chr3 9429965 9430263 -218094315 + AluSx SINE Alu 1 297 -15 200 262 98 0 chr3 9431806 9431867 -218092711 - MIR SINE MIR -116 146 80 2084 142 3 0 chr3 9432696 9433007 -218091571 - AluSx SINE Alu 0 312 1 192 194 0 0 chr3 9433034 9433065 -218091513 + MIR SINE MIR 120 150 -58 281 339 34 17 chr3 9433686 9433804 -218090774 + MIR SINE MIR 34 143 -65 710 254 0 44 chr3 9434069 9434250 -218090328 + MER5B DNA MER1_type 1 173 -5 237 98 0 0 chr3 9435002 9435043 -218089535 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 826 337 78 20 chr3 9435241 9435731 -218088847 - L3 LINE CR1 -3 1574 1057 21 57 0 0 chr3 9435823 9435858 -218088720 + AT_rich Low_complexity Low_complexity 1 35 0 320 284 35 30 chr3 9436425 9436594 -218087984 - L1ME LINE L1 -295 5826 5657 2079 127 0 0 chr3 9436838 9437114 -218087464 + AluSx SINE Alu 1 276 -36 752 18 9 28 chr3 9437122 9437231 -218087347 + (GAAA)n Simple_repeat Simple_repeat 2 108 0 616 284 60 18 chr3 9437354 9437685 -218086893 - L1ME4a LINE L1 -157 5964 5620 26 30 0 0 chr3 9438169 9438202 -218086376 + AT_rich Low_complexity Low_complexity 1 33 0 388 337 61 6 chr3 9439760 9439941 -218084637 + MIR SINE MIR 32 222 -40 274 294 25 68 chr3 9440856 9441019 -218083559 + MER117 DNA MER1_type 1 156 -41 342 302 40 16 chr3 9441397 9441523 -218083055 + L2 LINE L2 3158 3286 -27 210 300 0 0 chr3 9441563 9441613 -218082965 - L2 LINE L2 -82 3231 3182 2270 119 0 0 chr3 9442436 9442747 -218081831 - AluSx SINE Alu -1 311 1 211 302 157 34 chr3 9444305 9444573 -218080005 - L2 LINE L2 -630 2684 2384 281 278 26 26 chr3 9444628 9444743 -218079835 - MER103 DNA DNA -46 120 6 1932 232 58 109 chr3 9445181 9445350 -218079228 + LTR41 LTR ERVL 1 177 -596 2062 108 0 51 chr3 9445350 9445701 -218078877 - AluSx SINE Alu 0 312 1 1932 232 58 109 chr3 9445701 9446337 -218078241 + LTR41 LTR ERVL 177 765 -8 328 223 28 137 chr3 9446431 9446642 -218077936 - L1ME LINE L1 -296 5825 5638 471 332 55 14 chr3 9447546 9447766 -218076812 - MIR SINE MIR 0 262 34 24 32 0 0 chr3 9449768 9449799 -218074779 + AT_rich Low_complexity Low_complexity 1 31 0 2177 103 0 0 chr3 9449800 9450082 -218074496 - AluSc SINE Alu -27 282 1 269 246 0 0 chr3 9451407 9451476 -218073102 + (TTCA)n Simple_repeat Simple_repeat 4 72 0 216 269 58 39 chr3 9451867 9451971 -218072607 + MIR SINE MIR 108 213 -49 408 200 36 9 chr3 9451971 9452081 -218072497 - L1MA10 LINE L1 -3 6331 6219 5108 250 63 21 chr3 9452192 9454768 -218069810 - L1ME1 LINE L1 -281 5954 3277 * 41320 44 5 2 chr3 9454747 9460883 -218063695 - L1PA4 LINE L1 0 6224 70 2197 219 139 16 chr3 9460882 9461714 -218062864 - L1ME1 LINE L1 -2897 3318 2384 * 340 113 0 0 chr3 9461720 9461782 -218062796 - L1ME1 LINE L1 -4143 2253 2192 1886 262 74 15 chr3 9461788 9462395 -218062183 - L1ME1 LINE L1 -5649 747 96 188 0 0 69 chr3 9462395 9462424 -218062154 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1886 262 74 15 chr3 9462424 9462480 -218062098 - L1ME1 LINE L1 -6300 96 45 425 350 48 27 chr3 9462701 9463032 -218061546 - MLT1J2 LTR MaLR 0 450 113 288 250 0 24 chr3 9463547 9463631 -218060947 + MIR SINE MIR 166 247 -15 1065 144 18 1 chr3 9463831 9464081 -218060497 - L1MA4A LINE L1 -56 6247 6014 412 308 151 0 chr3 9464341 9464526 -218060052 + MIR SINE MIR 50 262 0 239 250 65 28 chr3 9464627 9464735 -218059843 + MIR SINE MIR 113 224 -38 186 43 0 0 chr3 9464861 9464884 -218059694 + (CAAAA)n Simple_repeat Simple_repeat 1 23 0 2117 111 7 3 chr3 9464946 9465244 -218059334 + AluSx SINE Alu 1 299 -13 1885 171 3 0 chr3 9465255 9465548 -218059030 + AluSg SINE Alu 1 294 -16 191 365 24 0 chr3 9467457 9467542 -218057036 - L2 LINE L2 -47 3225 3139 225 287 98 0 chr3 9467689 9467704 -218056874 - L1MA10 LINE L1 -3 6331 6317 911 233 93 85 chr3 9467704 9467760 -218056818 - L1ME2 LINE L1 -8 6154 6100 198 103 0 0 chr3 9467760 9467789 -218056789 + (TG)n Simple_repeat Simple_repeat 2 30 0 911 233 93 85 chr3 9467789 9468259 -218056319 - L1ME2 LINE L1 -62 6100 5617 446 284 57 7 chr3 9468785 9468926 -218055652 - MIR SINE MIR -18 244 97 24 0 0 0 chr3 9469015 9469039 -218055539 + AT_rich Low_complexity Low_complexity 1 24 0 2356 320 127 25 chr3 9470105 9471757 -218052821 + L2 LINE L2 47 1865 -1449 190 289 134 35 chr3 9471845 9471987 -218052591 + L2 LINE L2 3158 3313 0 423 250 62 0 chr3 9472334 9472446 -218052132 - MIR SINE MIR -142 120 2 608 197 142 0 chr3 9473173 9473300 -218051278 + FRAM SINE Alu 2 146 -30 403 211 65 16 chr3 9473361 9473484 -218051094 + MER104 DNA Tc2 40 168 -12 1064 190 23 31 chr3 9473857 9474115 -218050463 - MLT1A1 LTR MaLR 0 365 110 1968 138 0 52 chr3 9475002 9475327 -218049251 - AluJb SINE Alu -4 308 1 195 379 35 0 chr3 9475718 9475805 -218048773 + L3 LINE CR1 1468 1557 -20 438 298 61 33 chr3 9476500 9476681 -218047897 + MIR SINE MIR 12 197 -65 246 83 0 0 chr3 9476744 9476780 -218047798 - Alu SINE Alu -94 81 46 1769 173 3 22 chr3 9476869 9477187 -218047391 - AluJo SINE Alu 0 312 1 220 167 0 0 chr3 9477508 9477550 -218047028 + MER5B DNA MER1_type 1 42 -136 1401 211 82 39 chr3 9477715 9478155 -218046423 - MLT1C LTR MaLR -8 459 1 283 272 37 0 chr3 9478166 9478247 -218046331 + MIR SINE MIR 130 213 -49 375 248 20 0 chr3 9478568 9478669 -218045909 - Charlie8 DNA MER1_type -2227 190 88 535 262 0 14 chr3 9478686 9478831 -218045747 - MER63 DNA MER1_type -289 773 5 310 294 54 76 chr3 9479010 9479212 -218045366 - MIR SINE MIR -56 206 5 250 185 0 0 chr3 9480081 9480135 -218044443 + L1MC4 LINE L1 7986 8039 -3 23 54 0 0 chr3 9480170 9480207 -218044371 + AT_rich Low_complexity Low_complexity 1 37 0 659 326 83 42 chr3 9480213 9480390 -218044188 - L2 LINE L2 -511 2803 2635 2384 42 0 11 chr3 9480390 9480707 -218043871 + AluY SINE Alu 1 314 0 659 326 83 42 chr3 9480707 9480865 -218043713 - L2 LINE L2 -679 2635 2453 23 0 0 0 chr3 9480866 9480889 -218043689 + AT_rich Low_complexity Low_complexity 1 23 0 235 204 0 0 chr3 9481006 9481060 -218043518 - L1MC4 LINE L1 -3 8039 7986 559 289 17 8 chr3 9481061 9481296 -218043282 - L1MC4 LINE L1 -141 7901 7665 367 340 102 12 chr3 9482295 9482627 -218041951 - LTR16A LTR ERVL -88 362 1 259 359 90 12 chr3 9482662 9482829 -218041749 + MIR SINE MIR 22 201 -61 309 135 0 0 chr3 9482883 9482935 -218041643 + (TTA)n Simple_repeat Simple_repeat 3 54 0 291 291 60 82 chr3 9482971 9483105 -218041473 - L2 LINE L2 -1 3312 3182 234 189 0 84 chr3 9483107 9483202 -218041376 - L1MC4 LINE L1 -1347 6695 6609 2984 310 76 32 chr3 9483203 9484971 -218039607 - L2 LINE L2 -149 3164 1307 242 333 51 51 chr3 9485074 9485191 -218039387 + MIR3 SINE MIR 44 160 -48 260 157 8 164 chr3 9485230 9485364 -218039214 + MER112 DNA MER1_type 45 157 -103 239 274 95 0 chr3 9485676 9485771 -218038807 + MER102b DNA MER1_type 80 183 -158 238 276 0 31 chr3 9485771 9485869 -218038709 + MER102b DNA MER1_type 247 341 0 300 111 0 0 chr3 9487043 9487097 -218037481 + (TG)n Simple_repeat Simple_repeat 2 55 0 744 249 57 75 chr3 9487671 9488145 -218036433 + MLT1C LTR MaLR 6 626 0 468 118 13 0 chr3 9489419 9489495 -218035083 + MADE1 DNA Mariner 4 80 0 213 180 0 0 chr3 9489808 9489858 -218034720 + CT-rich Low_complexity Low_complexity 3 52 0 4138 142 7 7 chr3 9491387 9492086 -218032492 + L1PA16 LINE L1 5392 6090 -76 1333 272 49 32 chr3 9492210 9492703 -218031875 - L1ME1 LINE L1 -44 6122 5622 2536 96 53 2 chr3 9494771 9495165 -218029413 - L1MA1 LINE L1 0 6302 5889 352 317 49 28 chr3 9495257 9495399 -218029179 - MIR3 SINE MIR -63 145 1 610 187 0 0 chr3 9495628 9495751 -218028827 - L1M3 LINE L1 -677 5491 5369 1422 138 6 99 chr3 9495751 9496085 -218028493 + L1MA10 LINE L1 6018 6320 -14 304 311 82 8 chr3 9496517 9496639 -218027939 + L2 LINE L2 3141 3271 -1 230 317 20 20 chr3 9496744 9496845 -218027733 + CT-rich Low_complexity Low_complexity 3 103 0 752 290 143 35 chr3 9496928 9497569 -218027009 - L2 LINE L2 -32 3281 2563 2367 61 0 42 chr3 9497688 9498001 -218026577 - AluY SINE Alu -11 300 1 241 254 56 0 chr3 9498680 9498751 -218025827 + MER103 DNA DNA 26 100 -66 184 333 51 26 chr3 9499042 9499120 -218025458 - MIR SINE MIR -113 149 70 393 315 112 44 chr3 9499338 9499589 -218024989 + L3 LINE CR1 787 1054 -523 835 196 0 0 chr3 9500615 9500763 -218023815 + FRAM SINE Alu 1 148 -28 249 108 0 0 chr3 9500765 9500802 -218023776 + (CATA)n Simple_repeat Simple_repeat 1 37 0 1621 140 42 30 chr3 9501313 9501649 -218022929 - L1MA9 LINE L1 0 6312 5973 829 309 64 40 chr3 9502154 9502655 -218021923 - LTR33 LTR ERVL -2 519 7 * 2218 112 27 25 chr3 9502652 9503018 -218021560 - THE1C LTR MaLR -8 367 1 324 339 97 27 chr3 9503321 9503507 -218021071 - L2 LINE L2 -643 2671 2473 227 333 43 0 chr3 9504635 9504728 -218019850 + MLT1I LTR MaLR 55 151 -258 831 250 4 44 chr3 9504900 9505128 -218019450 - MER58A DNA MER1_type -5 219 1 268 161 81 16 chr3 9505128 9505188 -218019390 + MLT1I LTR MaLR 342 405 -4 1977 141 0 0 chr3 9505750 9506040 -218018538 - AluY SINE Alu -21 290 1 2536 121 5 3 chr3 9506985 9507357 -218017221 - THE1C LTR MaLR 0 375 3 9413 119 40 48 chr3 9507359 9507550 -218017028 - THE1C-int LTR MaLR 0 1580 1389 2055 121 3 0 chr3 9507550 9507832 -218016746 + AluSq SINE Alu 21 303 -10 9413 119 40 48 chr3 9507832 9509234 -218015344 - THE1C-int LTR MaLR -191 1389 1 2506 106 3 5 chr3 9509237 9509606 -218014972 - THE1C LTR MaLR -7 368 1 1983 144 34 0 chr3 9509861 9510031 -218014547 - AluSx SINE Alu -9 303 117 201 39 0 0 chr3 9510031 9510057 -218014521 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1983 144 34 0 chr3 9510057 9510177 -218014401 - AluSx SINE Alu -195 117 3 451 309 121 12 chr3 9510305 9510554 -218014024 - MLT1I LTR MaLR -28 381 106 1321 167 0 26 chr3 9510842 9511069 -218013509 + AluJb SINE Alu 87 307 -5 312 273 11 23 chr3 9512198 9512286 -218012292 - L2 LINE L2 -21 3292 3206 3687 165 14 26 chr3 9512315 9513085 -218011493 + L1MA7 LINE L1 5530 6290 -1 1669 275 29 13 chr3 9513437 9513961 -218010617 - MLT1F LTR MaLR -10 532 1 350 302 213 22 chr3 9515538 9515763 -218008815 - MLT1K LTR MaLR -287 301 34 320 329 27 32 chr3 9516811 9517001 -218007577 + MIR SINE MIR 2 190 -55 215 259 49 25 chr3 9518602 9518683 -218005895 + MIR SINE MIR 124 206 -56 247 258 75 33 chr3 9518746 9518866 -218005712 - L3b LINE CR1 -171 1412 1288 408 258 158 0 chr3 9518970 9519134 -218005444 - MIR SINE MIR -10 252 63 959 174 14 126 chr3 9519743 9519861 -218004717 - MER31A LTR ERV1 -135 350 220 1781 161 0 20 chr3 9519861 9520159 -218004419 + AluSx SINE Alu 1 292 -20 959 174 14 126 chr3 9520159 9520436 -218004142 - MER31A LTR ERV1 -265 220 11 438 332 24 67 chr3 9520690 9520943 -218003635 + MIR SINE MIR 6 247 -15 595 210 93 122 chr3 9522130 9522442 -218002136 + MER39 LTR ERV1 1 272 -293 1490 228 7 0 chr3 9522442 9522732 -218001846 - AluJo SINE Alu -20 292 1 595 210 93 122 chr3 9522732 9523013 -218001565 + MER39 LTR ERV1 272 560 -5 457 200 104 7 chr3 9523017 9523152 -218001426 - L1MC5 LINE L1 -102 7859 7712 23 0 0 0 chr3 9523196 9523219 -218001359 + AT_rich Low_complexity Low_complexity 1 23 0 530 145 8 113 chr3 9523332 9523456 -218001122 + FLAM_A SINE Alu 6 116 -26 280 231 53 91 chr3 9523486 9523750 -218000828 - L1MC5 LINE L1 -419 7542 7289 182 36 0 36 chr3 9524009 9524037 -218000541 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1733 137 99 4 chr3 9524045 9524308 -218000270 - AluSx SINE Alu -24 288 1 274 326 139 0 chr3 9524388 9524474 -218000104 + L2 LINE L2 3121 3218 -54 1555 95 110 215 chr3 9524497 9525033 -217999545 + LTR12 LTR ERV1 1 480 -234 247 270 0 0 chr3 9525056 9525119 -217999459 + (TGAA)n Simple_repeat Simple_repeat 4 66 0 2199 226 78 4 chr3 9525173 9525700 -217998878 - MLT1F1 LTR MaLR -1 566 1 281 343 0 40 chr3 9525816 9525915 -217998663 + MIR SINE MIR 47 141 -67 1732 193 88 19 chr3 9525916 9526347 -217998231 - LOR1b LTR ERV1 0 461 1 411 268 168 11 chr3 9526389 9526579 -217997999 - MIR SINE MIR 0 262 43 381 311 155 0 chr3 9526613 9526774 -217997804 + MER5A DNA MER1_type 4 189 0 492 254 34 40 chr3 9527302 9527479 -217997099 - MER5B DNA MER1_type -2 176 1 867 172 63 34 chr3 9527714 9527982 -217996596 - MER33 DNA MER1_type -1 323 48 2054 127 0 3 chr3 9528507 9528799 -217995779 + AluSx SINE Alu 1 291 -21 1386 160 43 0 chr3 9528913 9529169 -217995409 - L1MC1 LINE L1 -92 6241 5975 1160 102 25 0 chr3 9529682 9529839 -217994739 - AluSc SINE Alu -148 161 1 1050 148 0 6 chr3 9529913 9530096 -217994482 + L1MC1 LINE L1 5860 6041 -292 194 276 150 39 chr3 9530155 9530282 -217994296 - MER5A DNA MER1_type 0 189 49 202 369 15 0 chr3 9531463 9531528 -217993050 - L2 LINE L2 0 3272 3207 1819 170 10 0 chr3 9531738 9532038 -217992540 + AluJb SINE Alu 1 303 -9 228 67 0 0 chr3 9532049 9532079 -217992499 + (CA)n Simple_repeat Simple_repeat 2 31 0 756 175 37 78 chr3 9532200 9532417 -217992161 - ORSL DNA AcHobo -44 231 24 2072 200 138 30 chr3 9532472 9533182 -217991396 - LTR48 LTR ERV1 0 787 1 600 257 137 8 chr3 9533202 9533500 -217991078 - MLT1C LTR MaLR -6 461 59 1623 205 58 60 chr3 9534543 9535045 -217989533 - MLT1D LTR MaLR -2 503 3 200 375 81 21 chr3 9536560 9536795 -217987783 + L2 LINE L2 2806 3054 -218 261 325 66 13 chr3 9536983 9537134 -217987444 + Charlie8 DNA MER1_type 96 254 -2163 294 255 142 9 chr3 9537765 9537871 -217986707 + L2 LINE L2 3138 3257 -15 595 207 67 56 chr3 9538193 9538372 -217986206 + L1MEc LINE L1 44 224 -6172 1761 239 27 35 chr3 9538375 9538603 -217985975 + L1ME1 LINE L1 5371 5599 -579 3238 163 28 36 chr3 9538603 9538714 -217985864 + L1MB3 LINE L1 5513 5623 -560 2223 136 7 0 chr3 9538714 9539024 -217985554 + AluSx SINE Alu 1 312 0 3238 163 28 36 chr3 9539024 9539586 -217984992 + L1MB3 LINE L1 5623 6181 -2 1761 239 27 35 chr3 9539586 9540208 -217984370 + L1ME1 LINE L1 5599 6177 -1 1682 46 0 41 chr3 9541079 9541323 -217983255 - AluY SINE Alu 0 311 87 284 237 40 26 chr3 9541476 9541552 -217983026 + L2 LINE L2 3179 3255 -17 328 253 61 0 chr3 9542066 9542165 -217982413 + MIR SINE MIR 158 262 0 189 294 199 41 chr3 9542430 9542576 -217982002 - MIR3 SINE MIR -10 198 30 1412 219 68 21 chr3 9542619 9543002 -217981576 - MLT1C LTR MaLR -2 465 65 26 50 0 0 chr3 9543052 9543092 -217981486 + AT_rich Low_complexity Low_complexity 1 40 0 484 252 18 0 chr3 9543401 9543512 -217981066 - MER81 DNA DNA -1 113 1 277 303 50 82 chr3 9543881 9544071 -217980507 - MER5B DNA MER1_type -5 173 1 221 100 50 0 chr3 9544213 9544253 -217980325 + (CATA)n Simple_repeat Simple_repeat 2 43 0 556 280 42 26 chr3 9545597 9545790 -217978788 - MIR SINE MIR -8 254 59 22 0 0 0 chr3 9546389 9546411 -217978167 + AT_rich Low_complexity Low_complexity 1 22 0 273 152 0 0 chr3 9546952 9546998 -217977580 + MADE1 DNA Mariner 1 46 -34 690 266 138 9 chr3 9547017 9547235 -217977343 + MIR SINE MIR 17 262 0 237 224 12 106 chr3 9548419 9548504 -217976074 - MIR SINE MIR -97 165 89 21 0 0 0 chr3 9548548 9548569 -217976009 + AT_rich Low_complexity Low_complexity 1 21 0 814 218 63 11 chr3 9548599 9548773 -217975805 + MER5A DNA MER1_type 7 189 0 21 0 0 0 chr3 9549040 9549061 -217975517 + AT_rich Low_complexity Low_complexity 1 21 0 183 340 0 0 chr3 9549660 9549707 -217974871 + L2 LINE L2 3223 3269 -3 2214 105 0 3 chr3 9550001 9550295 -217974283 - AluY SINE Alu -18 293 1 332 283 22 0 chr3 9550375 9550467 -217974111 + MER5A DNA MER1_type 13 106 -83 1978 140 13 3 chr3 9550493 9550793 -217973785 + AluJb SINE Alu 1 303 -9 1213 244 53 28 chr3 9550911 9551345 -217973233 - L1ME1 LINE L1 -96 6070 5626 2627 204 51 45 chr3 9551352 9552111 -217972467 + MER21B LTR ERV1 1 857 -6 2864 250 72 35 chr3 9552170 9553312 -217971266 - L1MEc LINE L1 -5176 1220 37 255 293 27 0 chr3 9553454 9553529 -217971049 - L3 LINE CR1 -681 896 820 646 176 9 0 chr3 9553561 9553669 -217970909 - FLAM_A SINE Alu -32 110 2 472 313 178 29 chr3 9553671 9554019 -217970559 - L3 LINE CR1 -747 830 431 3233 210 35 26 chr3 9555130 9555964 -217968614 - L1MA9 LINE L1 -208 6104 5264 648 230 51 55 chr3 9556777 9556994 -217967584 + MER58A DNA MER1_type 1 216 -8 418 347 7 0 chr3 9557125 9557272 -217967306 - MIR3 SINE MIR -40 168 21 21 36 0 0 chr3 9557987 9558015 -217966563 + AT_rich Low_complexity Low_complexity 1 28 0 1340 139 139 46 chr3 9558285 9558608 -217965970 - L1MA8 LINE L1 -1 6290 5938 190 231 0 0 chr3 9558803 9558842 -217965736 - L2 LINE L2 -5 3308 3270 1957 158 49 6 chr3 9558906 9559255 -217965323 - THE1B LTR MaLR 0 364 1 194 264 14 111 chr3 9559443 9559587 -217964991 - L2 LINE L2 -287 3026 2897 278 306 75 50 chr3 9559644 9559804 -217964774 - L2 LINE L2 -527 2787 2624 212 300 125 17 chr3 9560046 9560174 -217964404 - MIR SINE MIR -63 145 11 29 70 0 0 chr3 9560702 9560759 -217963819 + AT_rich Low_complexity Low_complexity 1 57 0 25 31 0 0 chr3 9561631 9561663 -217962915 + AT_rich Low_complexity Low_complexity 1 32 0 2536 239 85 27 chr3 9562086 9563853 -217960725 - L1ME1 LINE L1 -4 6231 4367 286 169 68 40 chr3 9563943 9564091 -217960487 + (ATATG)n Simple_repeat Simple_repeat 3 154 0 608 234 92 35 chr3 9564114 9564396 -217960182 - L1ME1 LINE L1 -1968 4247 3950 293 80 0 20 chr3 9564405 9564455 -217960123 + (TC)n Simple_repeat Simple_repeat 2 50 0 400 307 28 39 chr3 9564488 9564667 -217959911 - L1ME1 LINE L1 -6040 356 180 276 30 0 0 chr3 9565147 9565170 -217959408 + (TG)n Simple_repeat Simple_repeat 1 56 0 276 30 0 0 chr3 9565170 9565203 -217959375 + (TG)n Simple_repeat Simple_repeat 2 34 0 1786 175 0 0 chr3 9565228 9565513 -217959065 - AluSx SINE Alu -27 285 1 4562 62 10 0 chr3 9568275 9568860 -217955718 - LTR10C LTR ERV1 0 591 1 1674 209 11 15 chr3 9569283 9569658 -217954920 + MLT1A1 LTR MaLR 3 359 -6 382 320 128 45 chr3 9570032 9570369 -217954209 + MLT1J2 LTR MaLR 80 444 -6 573 244 124 10 chr3 9570989 9571190 -217953388 - MIR SINE MIR -2 260 37 300 308 75 38 chr3 9571423 9571582 -217952996 - MIR SINE MIR -51 211 47 752 134 0 47 chr3 9571654 9571781 -217952797 + HERVK LTR ERVK 5384 5504 -1739 310 109 36 18 chr3 9571771 9571826 -217952752 + Harlequin LTR ERV1 557 612 -6284 * 21 0 0 0 chr3 9573165 9573186 -217951392 + AT_rich Low_complexity Low_complexity 1 21 0 475 289 69 23 chr3 9573564 9573737 -217950841 - MLT1J1 LTR MaLR -2 444 264 230 28 0 56 chr3 9573750 9573786 -217950792 + (TTTTA)n Simple_repeat Simple_repeat 5 38 0 2007 143 19 19 chr3 9573793 9574156 -217950422 - L1PB1 LINE L1 -8 6143 5781 310 308 0 11 chr3 9574160 9574251 -217950327 - L1MC4 LINE L1 -1339 6703 6614 4165 158 8 1 chr3 9574252 9575513 -217949065 - L1P5 LINE L1 -360 5791 4523 7741 207 12 6 chr3 9575513 9577242 -217947336 + L1P5 LINE L1 2777 4514 -1632 644 348 43 3 chr3 9577242 9577524 -217947054 - MLT1J1 LTR MaLR -153 293 1 351 335 48 44 chr3 9578467 9578715 -217945863 - MLT1K LTR MaLR -14 574 326 26 30 0 0 chr3 9578745 9578778 -217945800 + AT_rich Low_complexity Low_complexity 1 33 0 1293 269 81 9 chr3 9578790 9579225 -217945353 - LTR33 LTR ERVL -19 502 37 183 366 0 14 chr3 9579767 9579838 -217944740 + L2 LINE L2 3201 3270 -2 22 35 0 0 chr3 9581461 9581490 -217943088 + AT_rich Low_complexity Low_complexity 1 29 0 1731 156 3 26 chr3 9582092 9582399 -217942179 + AluJb SINE Alu 1 300 -12 23 33 0 0 chr3 9583767 9583797 -217940781 + AT_rich Low_complexity Low_complexity 1 30 0 400 287 147 7 chr3 9583832 9583982 -217940596 - MIR SINE MIR -44 218 48 838 246 88 24 chr3 9584136 9584433 -217940145 + MER5C DNA MER1_type 7 322 -2 441 0 0 0 chr3 9585189 9585238 -217939340 + (TG)n Simple_repeat Simple_repeat 2 50 0 2075 98 18 0 chr3 9585241 9585518 -217939060 - AluSx SINE Alu -30 282 1 219 211 19 0 chr3 9585751 9585803 -217938775 - L2 LINE L2 -15 3257 3205 316 226 29 78 chr3 9585921 9585960 -217938618 - Charlie7 DNA MER1_type -2515 97 58 1695 154 49 35 chr3 9585960 9586330 -217938248 + THE1C LTR MaLR 1 375 0 316 226 29 78 chr3 9586330 9586392 -217938186 - Charlie7 DNA MER1_type -2554 58 1 6953 56 11 0 chr3 9586448 9587427 -217937151 + L1PA7 LINE L1 5166 6154 0 726 179 12 49 chr3 9587608 9587770 -217936808 - MER58B DNA MER1_type 0 341 186 390 286 191 0 chr3 9587933 9588080 -217936498 + MER5A DNA MER1_type 13 187 -2 189 308 103 0 chr3 9588966 9589044 -217935534 + MIR SINE MIR 98 183 -79 23 0 0 0 chr3 9589207 9589230 -217935348 + AT_rich Low_complexity Low_complexity 1 23 0 246 289 0 0 chr3 9589555 9589607 -217934971 + L2 LINE L2 3209 3260 -12 188 424 11 5 chr3 9590053 9590237 -217934341 + L2 LINE L2 2177 2361 -953 307 268 22 94 chr3 9590291 9590429 -217934149 - L1MC4 LINE L1 -1307 6735 6608 196 368 40 0 chr3 9590524 9590600 -217933978 + L2 LINE L2 3235 3313 0 13829 143 36 16 chr3 9590830 9593198 -217931380 + Tigger1 DNA MER2_type 1 2417 -1 694 321 178 33 chr3 9593300 9593945 -217930633 - L2 LINE L2 -1 3312 2575 536 244 179 26 chr3 9593948 9594104 -217930474 + MER5A DNA MER1_type 7 186 -3 696 315 68 0 chr3 9594127 9594406 -217930172 - L2 LINE L2 -747 2567 2270 21 36 0 0 chr3 9596010 9596038 -217928540 + AT_rich Low_complexity Low_complexity 1 28 0 207 256 61 37 chr3 9597454 9597536 -217927042 + MIR SINE MIR 120 203 -59 326 282 107 10 chr3 9597654 9597757 -217926821 + MIR SINE MIR 37 149 -113 26 52 0 17 chr3 9599517 9599549 -217925029 + AT_rich Low_complexity Low_complexity 1 33 -24 2074 126 0 0 chr3 9599549 9599835 -217924743 - AluSx SINE Alu -26 286 1 26 52 0 17 chr3 9599835 9599860 -217924718 + AT_rich Low_complexity Low_complexity 33 57 0 192 77 0 0 chr3 9600904 9600930 -217923648 + (A)n Simple_repeat Simple_repeat 1 26 0 194 0 39 0 chr3 9601684 9601710 -217922868 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 866 173 0 0 chr3 9601715 9601854 -217922724 - AluY SINE Alu -26 285 147 292 309 49 16 chr3 9602038 9602161 -217922417 + MIR SINE MIR 17 143 -119 1531 169 81 0 chr3 9602496 9602757 -217921821 + AluJo SINE Alu 3 284 -28 186 143 0 0 chr3 9602761 9602796 -217921782 + (CAA)n Simple_repeat Simple_repeat 2 36 0 231 228 35 0 chr3 9602904 9602961 -217921617 - MIR SINE MIR -66 142 84 201 39 0 0 chr3 9603012 9603038 -217921540 + (TG)n Simple_repeat Simple_repeat 1 26 0 2240 110 3 0 chr3 9603090 9603399 -217921179 + AluSg SINE Alu 1 310 0 599 287 74 10 chr3 9603721 9603923 -217920655 - L2 LINE L2 -1 3312 3098 193 381 31 21 chr3 9604150 9604247 -217920331 - MIR SINE MIR -90 118 21 646 324 42 0 chr3 9604339 9604552 -217920026 + MIR SINE MIR 28 249 -13 1664 279 107 34 chr3 9605888 9606562 -217918016 - MER21B LTR ERV1 -124 739 17 194 350 43 14 chr3 9607405 9607545 -217917033 + L2 LINE L2 1876 2019 -1295 579 195 47 0 chr3 9608876 9609178 -217915400 + (TA)n Simple_repeat Simple_repeat 1 316 0 515 235 24 0 chr3 9609191 9609357 -217915221 + (TATATG)n Simple_repeat Simple_repeat 5 174 0 391 266 29 0 chr3 9609413 9609586 -217914992 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 * 479 129 51 39 chr3 9609574 9609752 -217914826 + (TA)n Simple_repeat Simple_repeat 1 180 0 2627 229 61 20 chr3 9610325 9611034 -217913544 - L1ME2 LINE L1 -8 6090 5353 421 257 132 21 chr3 9611055 9611363 -217913215 - L1ME2 LINE L1 -3773 2325 2001 209 184 0 13 chr3 9611468 9611544 -217913034 + (TA)n Simple_repeat Simple_repeat 2 76 0 1207 278 78 76 chr3 9611547 9612946 -217911632 - L1ME2 LINE L1 -4319 1942 494 913 99 13 13 chr3 9613413 9613565 -217911013 + (TTTC)n Simple_repeat Simple_repeat 1 152 0 878 198 0 64 chr3 9613679 9613881 -217910697 + MLT1A2 LTR MaLR 21 209 -165 189 74 0 0 chr3 9613916 9613943 -217910635 + (TTTTC)n Simple_repeat Simple_repeat 5 31 0 497 275 39 11 chr3 9613953 9614131 -217910447 + MLT1B LTR MaLR 192 374 0 400 325 27 32 chr3 9614418 9614606 -217909972 - MIR SINE MIR -75 187 1 23 33 0 0 chr3 9615574 9615604 -217908974 + AT_rich Low_complexity Low_complexity 1 30 0 415 38 0 0 chr3 9615964 9616017 -217908561 - L1PA6 LINE L1 0 6154 6102 371 287 8 54 chr3 9616822 9616951 -217907627 - L2 LINE L2 -1 3271 3149 210 261 0 0 chr3 9616971 9617017 -217907561 + L2 LINE L2 3264 3309 -4 235 307 53 18 chr3 9617430 9617544 -217907034 - L2 LINE L2 -1307 2007 1890 1937 132 22 0 chr3 9620011 9620284 -217904294 + AluSx SINE Alu 1 279 -33 231 36 0 0 chr3 9620284 9620312 -217904266 + (CA)n Simple_repeat Simple_repeat 1 28 0 358 265 29 37 chr3 9621449 9621585 -217902993 + MLT1K LTR MaLR 446 580 -8 381 269 11 0 chr3 9622752 9622845 -217901733 + MSTA LTR MaLR 335 428 0 9057 156 6 35 chr3 9622847 9624473 -217900105 + MSTA-int LTR MaLR 3 1580 0 1737 173 93 18 chr3 9624473 9624871 -217899707 + MSTA LTR MaLR 1 428 0 339 356 96 36 chr3 9625379 9625933 -217898645 - L2 LINE L2 -910 2404 1818 388 242 40 32 chr3 9626433 9626557 -217898021 - MIR SINE MIR -44 218 94 584 233 95 98 chr3 9627678 9628099 -217896479 + L1ME1 LINE L1 5729 6163 -1 2023 130 0 0 chr3 9628106 9628411 -217896167 + AluSx SINE Alu 1 305 0 1746 224 38 33 chr3 9628608 9629001 -217895577 - MLT1E LTR MaLR 0 593 199 214 181 0 24 chr3 9629025 9629108 -217895470 + (TA)n Simple_repeat Simple_repeat 2 82 0 475 244 1 22 chr3 9629108 9629218 -217895360 - MLT1E LTR MaLR -404 163 58 21 36 0 0 chr3 9629429 9629457 -217895121 + AT_rich Low_complexity Low_complexity 1 28 0 1014 287 44 75 chr3 9630052 9630640 -217893938 + L1MCb LINE L1 13 582 -5463 1737 186 0 7 chr3 9631247 9631542 -217893036 - AluJo SINE Alu -17 295 3 353 295 38 0 chr3 9632695 9632800 -217891778 - MIR SINE MIR -104 158 50 315 274 49 74 chr3 9634126 9634408 -217890170 + L1ME4a LINE L1 5634 5922 -199 1902 156 10 0 chr3 9634408 9634697 -217889881 + AluJb SINE Alu 9 300 -12 315 274 49 74 chr3 9634697 9634739 -217889839 + L1ME4a LINE L1 5922 5964 -157 3060 169 87 29 chr3 9634739 9635426 -217889152 - LTR8A LTR ERV1 0 727 1 315 274 49 74 chr3 9635426 9635530 -217889048 + L1ME4a LINE L1 5964 6052 -69 17935 181 11 12 chr3 9636327 9641481 -217883097 - L1PA4 LINE L1 -151 6655 1489 269 272 12 0 chr3 9641479 9641560 -217883018 - L1PA4 LINE L1 -5217 1570 1489 * 269 272 12 0 chr3 9641558 9641639 -217882939 - L1PA4 LINE L1 -5217 1570 1489 269 272 12 0 chr3 9641637 9641718 -217882860 - L1PA4 LINE L1 -5217 1570 1489 * 293 259 12 0 chr3 9641716 9641797 -217882781 - L1PA4 LINE L1 -5217 1570 1489 * 731 289 7 49 chr3 9641795 9642099 -217882479 - L1PA4 LINE L1 -5217 1570 1280 27 0 0 0 chr3 9642978 9643005 -217881573 + AT_rich Low_complexity Low_complexity 1 27 0 419 242 74 0 chr3 9643489 9643584 -217880994 + MLT1H LTR MaLR 133 234 -315 566 261 48 52 chr3 9645379 9645628 -217878950 + LTR16A1 LTR ERVL 209 456 -1 21 0 0 0 chr3 9645999 9646020 -217878558 + AT_rich Low_complexity Low_complexity 1 21 0 232 286 0 0 chr3 9646169 9646232 -217878346 + (CA)n Simple_repeat Simple_repeat 2 64 0 207 100 0 0 chr3 9647167 9647197 -217877381 + (TAGA)n Simple_repeat Simple_repeat 4 33 0 764 167 8 8 chr3 9647945 9648077 -217876501 - FLAM_C SINE Alu 0 133 2 21 0 0 0 chr3 9648587 9648608 -217875970 + AT_rich Low_complexity Low_complexity 1 21 0 540 248 61 41 chr3 9648752 9649118 -217875460 + LTR48B LTR ERV1 1 608 -179 2169 192 69 16 chr3 9649118 9649712 -217874866 - MER39 LTR ERV1 0 707 1 267 146 107 117 chr3 9649712 9649799 -217874779 + LTR49 LTR ERV1 420 505 -90 236 213 0 98 chr3 9649799 9649860 -217874718 + Tigger5 DNA MER2_type 1 55 -2268 339 217 0 0 chr3 9649881 9649941 -217874637 + Tigger5 DNA MER2_type 2264 2323 0 300 283 40 0 chr3 9649941 9650035 -217874543 + MER34 LTR ERV1 445 542 0 844 114 16 0 chr3 9650585 9650708 -217873870 - AluSp/q SINE Alu -12 301 177 496 374 11 26 chr3 9650820 9650936 -217873642 + L3 LINE CR1 844 960 -617 845 228 105 40 chr3 9650936 9651335 -217873243 - LTR37A LTR ERV1 0 426 2 496 374 11 26 chr3 9651335 9651483 -217873095 + L3 LINE CR1 960 1104 -473 398 322 94 55 chr3 9651513 9651945 -217872633 + L2 LINE L2 2363 2816 -498 225 0 0 0 chr3 9651945 9651970 -217872608 + (TCTCTG)n Simple_repeat Simple_repeat 3 27 0 398 322 94 55 chr3 9651970 9652006 -217872572 + L2 LINE L2 2816 2849 -465 25 0 0 0 chr3 9652243 9652268 -217872310 + AT_rich Low_complexity Low_complexity 1 25 0 1368 134 44 19 chr3 9652848 9653283 -217871295 - LTR54 LTR ERV1 -2 508 2 267 336 69 8 chr3 9654078 9654209 -217870369 + MIR SINE MIR 124 262 0 291 317 63 0 chr3 9654271 9654413 -217870165 - MIR SINE MIR -57 205 55 625 179 172 13 chr3 9654506 9654657 -217869921 - FRAM SINE Alu 0 176 2 722 304 25 21 chr3 9655214 9655451 -217869127 + LTR33 LTR ERVL 45 282 -239 300 258 281 6 chr3 9655726 9655904 -217868674 - MIR SINE MIR -2 260 34 802 209 70 0 chr3 9655935 9656107 -217868471 - MER5A DNA MER1_type -2 187 4 441 287 54 0 chr3 9657764 9657893 -217866685 + MIR SINE MIR 59 194 -68 336 200 0 0 chr3 9658742 9658822 -217865756 + (TA)n Simple_repeat Simple_repeat 2 81 0 214 338 188 6 chr3 9660164 9660324 -217864254 + MIR SINE MIR 64 252 -10 318 50 0 0 chr3 9660333 9660373 -217864205 + (CAT)n Simple_repeat Simple_repeat 2 41 0 351 276 24 8 chr3 9660839 9660962 -217863616 - LTR67 LTR ERVL -13 544 420 351 354 31 15 chr3 9661080 9661210 -217863368 - LTR67 LTR ERVL -316 241 110 33437 38 4 0 chr3 9661210 9665912 -217858666 + L1PA3 LINE L1 1239 5953 -202 181 275 120 93 chr3 9666528 9666786 -217857792 - L2 LINE L2 -54 3259 2995 367 218 0 32 chr3 9666802 9666926 -217857652 + GA-rich Low_complexity Low_complexity 1 120 0 2095 105 3 3 chr3 9667659 9667944 -217856634 - AluSc SINE Alu -22 287 3 2429 154 2 28 chr3 9669889 9670312 -217854266 + MSTB1 LTR MaLR 1 412 -20 210 303 13 13 chr3 9670391 9670467 -217854111 - L2 LINE L2 -9 3263 3188 2172 120 0 0 chr3 9670522 9670822 -217853756 + AluY SINE Alu 1 300 -11 727 289 143 35 chr3 9670941 9671582 -217852996 + L2 LINE L2 2563 3281 -32 230 317 20 20 chr3 9671665 9671766 -217852812 + GA-rich Low_complexity Low_complexity 3 103 0 300 311 82 8 chr3 9671871 9671993 -217852585 - L2 LINE L2 -1 3271 3141 1450 138 6 99 chr3 9672425 9672759 -217851819 - L1MA10 LINE L1 -14 6320 6018 599 195 0 0 chr3 9672759 9672882 -217851696 + L1M3 LINE L1 5369 5491 -677 7855 67 22 4 chr3 9673302 9674418 -217850160 + L1P LINE L1 966 2102 -4044 390 222 56 93 chr3 9674423 9674585 -217849993 - MER31-int LTR ERV1 -216 4720 4565 714 130 19 0 chr3 9674601 9674709 -217849869 - MSTB1 LTR MaLR 0 432 323 22 0 0 0 chr3 9674821 9674843 -217849735 + AT_rich Low_complexity Low_complexity 1 22 0 185 358 76 52 chr3 9675432 9675762 -217848816 - L2 LINE L2 -571 2743 2406 335 172 0 31 chr3 9676043 9676107 -217848471 - L1ME3A LINE L1 -78 6092 6031 2229 116 0 0 chr3 9676432 9676726 -217847852 - AluY SINE Alu -17 294 1 404 251 52 76 chr3 9676730 9676941 -217847637 + HsTC2 DNA Tc2 13 218 -1680 759 257 60 0 chr3 9676944 9677162 -217847416 + HsTC2 DNA Tc2 500 730 -1168 707 179 26 13 chr3 9677470 9677621 -217846957 - L1MC1 LINE L1 0 6333 6181 629 198 0 0 chr3 9677625 9677736 -217846842 - AluJb SINE Alu -185 127 17 647 126 0 10 chr3 9677739 9677842 -217846736 - L1MC1 LINE L1 -152 6181 6080 279 179 30 15 chr3 9677880 9677947 -217846631 + HsTC2 DNA Tc2 1831 1898 0 196 266 92 92 chr3 9678138 9678247 -217846331 - MIR SINE MIR -152 110 2 330 355 82 14 chr3 9679209 9679429 -217845149 - MIR SINE MIR -25 237 3 233 136 114 0 chr3 9680588 9680632 -217843946 - MIR SINE MIR -107 155 107 308 335 55 6 chr3 9681860 9682024 -217842554 + MIR SINE MIR 20 191 -71 1667 183 3 17 chr3 9682306 9682596 -217841982 + AluJb SINE Alu 1 286 -26 240 301 36 36 chr3 9685236 9685319 -217839259 + L2 LINE L2 3189 3271 -1 498 61 0 0 chr3 9685515 9685581 -217838997 + (TCCA)n Simple_repeat Simple_repeat 2 67 0 1759 184 58 18 chr3 9685971 9686352 -217838226 + MSTD LTR MaLR 1 396 0 31 0 0 0 chr3 9686671 9686702 -217837876 + AT_rich Low_complexity Low_complexity 1 31 0 2282 110 7 0 chr3 9687535 9687835 -217836743 + AluSx SINE Alu 1 302 -10 1056 125 0 0 chr3 9688537 9688681 -217835897 + AluSp SINE Alu 116 259 -54 2072 115 3 3 chr3 9689141 9689437 -217835141 - AluSx SINE Alu -16 296 1 405 250 10 0 chr3 9689468 9689568 -217835010 + FLAM_A SINE Alu 25 125 -17 29 78 0 0 chr3 9692257 9692321 -217832257 + AT_rich Low_complexity Low_complexity 1 64 0 2060 134 3 3 chr3 9692707 9693006 -217831572 - AluSx SINE Alu -13 299 1 687 244 68 94 chr3 9693686 9694068 -217830510 + MLT1J LTR MaLR 123 494 -17 310 293 107 27 chr3 9694183 9694333 -217830245 + MIR3 SINE MIR 27 188 -20 2063 134 0 7 chr3 9694464 9694770 -217829808 + AluSg SINE Alu 5 308 -2 246 81 0 0 chr3 9695130 9695167 -217829411 + (CA)n Simple_repeat Simple_repeat 1 37 0 2141 111 0 26 chr3 9695674 9695981 -217828597 - AluSc SINE Alu -8 301 3 596 208 84 45 chr3 9697570 9697748 -217826830 + MER20 DNA MER1_type 35 219 0 366 23 0 0 chr3 9698616 9698659 -217825919 + (CAT)n Simple_repeat Simple_repeat 2 44 0 284 373 63 6 chr3 9698814 9698972 -217825606 - MLT1K LTR MaLR -408 180 14 24 0 0 0 chr3 9699352 9699376 -217825202 + AT_rich Low_complexity Low_complexity 1 24 0 226 321 0 9 chr3 9699844 9699956 -217824622 + A-rich Low_complexity Low_complexity 5 115 0 22 80 0 0 chr3 9700009 9700059 -217824519 + AT_rich Low_complexity Low_complexity 1 50 0 28 48 0 0 chr3 9700361 9700403 -217824175 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr3 9702884 9702905 -217821673 + AT_rich Low_complexity Low_complexity 1 21 0 235 158 13 26 chr3 9703402 9703478 -217821100 + (TTATA)n Simple_repeat Simple_repeat 5 79 0 1519 185 42 1 chr3 9704081 9704537 -217820041 + L1M2 LINE L1 5057 5530 -743 505 305 84 18 chr3 9704775 9705001 -217819577 + MIR SINE MIR 5 245 -17 180 271 0 42 chr3 9705226 9705274 -217819304 + L3 LINE CR1 1517 1562 -15 271 309 75 23 chr3 9705562 9705911 -217818667 + L1ME LINE L1 4256 4622 -1524 303 271 78 78 chr3 9706347 9706513 -217818065 + L1ME LINE L1 5647 5812 -309 221 238 0 0 chr3 9706513 9706555 -217818023 + polypurine Low_complexity Low_complexity 1 42 0 28 0 0 0 chr3 9706570 9706598 -217817980 + AT_rich Low_complexity Low_complexity 1 28 0 1893 155 24 39 chr3 9706628 9707009 -217817569 - THE1C LTR MaLR 0 375 1 211 217 22 0 chr3 9708225 9708271 -217816307 + CT-rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr3 9708513 9708541 -217816037 + AT_rich Low_complexity Low_complexity 1 28 0 340 241 15 138 chr3 9708570 9708765 -217815813 + MIR SINE MIR 78 248 -14 234 369 37 42 chr3 9713970 9714184 -217810394 + MIR SINE MIR 19 231 -31 195 184 0 0 chr3 9714397 9714435 -217810143 + (TG)n Simple_repeat Simple_repeat 1 38 0 186 103 0 0 chr3 9714434 9714463 -217810115 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 1296 112 0 0 chr3 9715585 9715793 -217808785 + AluSg/x SINE Alu 114 321 0 317 322 119 0 chr3 9715899 9716017 -217808561 + L2 LINE L2 3181 3312 -1 183 324 103 15 chr3 9716457 9716525 -217808053 + L2 LINE L2 3149 3222 -50 252 347 85 17 chr3 9716663 9716839 -217807739 + L2 LINE L2 2659 2846 -468 414 320 42 82 chr3 9717197 9717650 -217806928 + LTR67 LTR ERVL 100 534 -23 271 291 94 43 chr3 9717763 9717880 -217806698 + L2 LINE L2 3142 3264 -8 215 288 38 83 chr3 9718244 9718376 -217806202 - L2 LINE L2 -220 3052 2927 26 0 0 0 chr3 9723114 9723140 -217801438 + AT_rich Low_complexity Low_complexity 1 26 0 193 260 52 65 chr3 9723973 9724050 -217800528 + MIR SINE MIR 12 87 -175 355 246 88 35 chr3 9725212 9725326 -217799252 + L2 LINE L2 3194 3313 0 273 376 29 29 chr3 9725792 9725962 -217798616 + MIR SINE MIR 92 261 -1 403 223 177 15 chr3 9726049 9726179 -217798399 - L2 LINE L2 -2 3311 3161 1235 299 164 22 chr3 9726255 9727040 -217797538 - L2 LINE L2 -720 2594 1698 2256 125 0 0 chr3 9727095 9727407 -217797171 - AluSx SINE Alu 0 312 1 741 300 182 17 chr3 9727794 9728151 -217796427 - L2 LINE L2 0 3313 2898 2236 108 0 7 chr3 9728424 9728729 -217795849 + AluSx SINE Alu 1 303 -9 205 286 29 0 chr3 9730930 9731000 -217793578 - MIR SINE MIR -185 77 6 2492 63 0 16 chr3 9732035 9732351 -217792227 + AluY SINE Alu 1 311 0 202 277 21 0 chr3 9732537 9732584 -217791994 + L2 LINE L2 3210 3257 -15 1559 226 46 6 chr3 9732642 9732992 -217791586 + MLT1A2 LTR MaLR 3 366 -8 251 290 35 48 chr3 9733630 9733775 -217790803 - ERVL LTR ERVL -671 5093 4951 925 243 0 0 chr3 9734277 9734466 -217790112 - MER5A DNA MER1_type 0 189 1 237 224 238 41 chr3 9734540 9734687 -217789891 - LTR67 LTR ERVL -7 550 375 184 339 90 51 chr3 9735165 9735342 -217789236 + L2 LINE L2 2794 2977 -337 1525 173 5 126 chr3 9735409 9735831 -217788747 - MLT1B LTR MaLR -18 372 2 262 190 70 10 chr3 9737248 9737348 -217787230 + (TA)n Simple_repeat Simple_repeat 2 107 0 594 265 97 22 chr3 9737350 9737535 -217787043 - MIR SINE MIR -55 207 9 600 334 64 53 chr3 9737575 9738312 -217786266 + L2 LINE L2 2489 3235 -78 289 234 81 36 chr3 9738840 9738951 -217785627 - MLT1J2 LTR MaLR 0 450 335 258 350 17 0 chr3 9739234 9739354 -217785224 + MIR SINE MIR 111 232 -30 24 0 0 0 chr3 9739668 9739692 -217784886 + AT_rich Low_complexity Low_complexity 1 24 0 2184 125 0 0 chr3 9739884 9740181 -217784397 - AluSx SINE Alu -11 301 5 1202 160 4 110 chr3 9740494 9740775 -217783803 + AluJo SINE Alu 44 294 -18 24 0 0 0 chr3 9742154 9742178 -217782400 + AT_rich Low_complexity Low_complexity 1 24 0 2001 118 0 78 chr3 9743081 9743402 -217781176 + AluSx SINE Alu 1 296 -16 292 273 65 0 chr3 9744174 9744313 -217780265 - MER103 DNA DNA -16 150 3 262 361 54 23 chr3 9744441 9744571 -217780007 - L3 LINE CR1 -1210 367 234 1722 157 11 18 chr3 9745886 9746193 -217778385 - AluJb SINE Alu 0 305 1 210 212 0 30 chr3 9747603 9747627 -217776951 + (TAA)n Simple_repeat Simple_repeat 1 24 -40 2168 102 7 0 chr3 9747627 9747912 -217776666 + AluSx SINE Alu 1 287 -25 210 212 0 30 chr3 9747912 9747953 -217776625 + (TAA)n Simple_repeat Simple_repeat 24 64 0 229 306 0 0 chr3 9748353 9748425 -217776153 + GA-rich Low_complexity Low_complexity 2 73 0 23 54 0 0 chr3 9748663 9748700 -217775878 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr3 9748718 9748756 -217775822 + AT_rich Low_complexity Low_complexity 1 38 0 377 291 90 45 chr3 9748860 9749083 -217775495 - L1ME4a LINE L1 -224 5897 5665 441 314 93 42 chr3 9749227 9749463 -217775115 - MIR SINE MIR -14 248 1 574 266 57 11 chr3 9749908 9750085 -217774493 + MER5A DNA MER1_type 2 186 -3 206 118 0 29 chr3 9750898 9750932 -217773646 + (TCTG)n Simple_repeat Simple_repeat 2 34 0 883 158 0 62 chr3 9751220 9751397 -217773181 + FAM SINE Alu 1 166 -9 225 0 0 0 chr3 9751483 9751508 -217773070 + (CA)n Simple_repeat Simple_repeat 2 26 0 2505 150 26 42 chr3 9751712 9752206 -217772372 - MER66B LTR ERV1 0 486 1 389 281 130 16 chr3 9752658 9752850 -217771728 + MER58C DNA MER1_type 2 215 0 280 317 122 18 chr3 9752972 9753136 -217771442 - MLT1J2 LTR MaLR -70 380 200 248 264 0 8 chr3 9753414 9753535 -217771043 + (TA)n Simple_repeat Simple_repeat 2 121 0 444 276 121 40 chr3 9753583 9753782 -217770796 + MIR SINE MIR 34 248 -14 247 250 15 0 chr3 9754201 9754269 -217770309 + (CA)n Simple_repeat Simple_repeat 2 70 0 180 0 0 0 chr3 9754275 9754295 -217770283 + (CATA)n Simple_repeat Simple_repeat 1 20 0 22 35 0 0 chr3 9754977 9755006 -217769572 + AT_rich Low_complexity Low_complexity 1 29 0 183 250 0 0 chr3 9755264 9755308 -217769270 - L2 LINE L2 -1 3312 3269 1349 246 79 4 chr3 9755647 9756134 -217768444 + L1MD2 LINE L1 5586 6115 -51 28 0 0 0 chr3 9756152 9756180 -217768398 + AT_rich Low_complexity Low_complexity 1 28 0 227 350 0 41 chr3 9756482 9756579 -217767999 - MER5A DNA MER1_type -95 94 2 278 383 55 22 chr3 9756891 9757202 -217767376 + L2 LINE L2 1607 1927 -1387 206 176 20 0 chr3 9757940 9757991 -217766587 + CT-rich Low_complexity Low_complexity 1 52 0 249 354 49 21 chr3 9758529 9758673 -217765905 + MIR SINE MIR 86 233 -29 738 270 73 43 chr3 9758890 9759123 -217765455 + MIR SINE MIR 2 241 -21 185 329 13 51 chr3 9759266 9759345 -217765233 + L2 LINE L2 3231 3306 -7 348 123 18 0 chr3 9760182 9760239 -217764339 - MLT2D LTR ERVL 0 414 357 210 150 0 0 chr3 9760296 9760336 -217764242 + (CCTA)n Simple_repeat Simple_repeat 4 43 0 1511 248 17 8 chr3 9760340 9760699 -217763879 - MLT2D LTR ERVL -48 366 5 543 304 75 20 chr3 9760723 9760976 -217763602 + L2 LINE L2 2812 3078 -194 199 268 0 85 chr3 9761372 9761454 -217763124 - MER5A DNA MER1_type -87 102 28 871 230 171 12 chr3 9762506 9762755 -217761823 + L1ME3 LINE L1 5833 6125 -37 2150 144 14 3 chr3 9762755 9763117 -217761461 - MER47A DNA MER2_type 0 366 1 698 290 83 39 chr3 9763349 9763799 -217760779 + MLT1H1 LTR MaLR 80 555 0 791 184 119 0 chr3 9763860 9764028 -217760550 + MER20 DNA MER1_type 32 219 0 1532 198 87 37 chr3 9764166 9764601 -217759977 - MSTB2 LTR MaLR 0 457 1 366 322 164 0 chr3 9764687 9764839 -217759739 - MER5A DNA MER1_type 0 189 13 753 239 74 0 chr3 9764849 9765025 -217759553 - MER5A DNA MER1_type 0 189 1 2242 64 0 0 chr3 9765247 9765514 -217759064 - AluY SINE Alu -7 304 38 507 321 26 16 chr3 9765861 9766054 -217758524 - MIR SINE MIR -18 244 50 2105 127 0 0 chr3 9766596 9766913 -217757665 - AluSx SINE Alu 0 317 1 190 333 0 0 chr3 9767024 9767078 -217757500 + MER5A DNA MER1_type 86 139 -50 3971 147 15 48 chr3 9767207 9768004 -217756574 - L1MA4A LINE L1 -4 6299 5529 293 253 94 79 chr3 9769883 9770085 -217754493 - MARNA DNA Mariner -220 366 162 411 353 0 0 chr3 9771488 9771638 -217752940 - MER5B DNA MER1_type 0 178 29 249 108 0 0 chr3 9772454 9772491 -217752087 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 301 308 23 18 chr3 9772645 9772791 -217751787 + MIR3 SINE MIR 32 178 -30 * 306 302 0 12 chr3 9772758 9772844 -217751734 - L2 LINE L2 -4 3309 3225 263 317 16 41 chr3 9773184 9773221 -217751357 + L2 LINE L2 3194 3230 -83 1768 187 22 14 chr3 9773221 9773584 -217750994 - MER47A DNA MER2_type 0 366 1 263 317 16 41 chr3 9773584 9773669 -217750909 + L2 LINE L2 3230 3313 0 218 354 80 34 chr3 9775536 9775711 -217748867 - MER5A DNA MER1_type -6 183 1 317 93 19 0 chr3 9776618 9776672 -217747906 + (TTCA)n Simple_repeat Simple_repeat 4 58 0 194 213 64 0 chr3 9777017 9777064 -217747514 - L2 LINE L2 -7 3306 3257 418 286 0 17 chr3 9777658 9777777 -217746801 - MIR3 SINE MIR -9 199 83 653 288 214 16 chr3 9777803 9778181 -217746397 - LTR16A LTR ERVL 0 457 5 390 230 56 56 chr3 9778601 9778727 -217745851 - L2 LINE L2 0 3313 3188 186 326 211 11 chr3 9778751 9778846 -217745732 + L2 LINE L2 3154 3267 -5 303 350 0 34 chr3 9779378 9779495 -217745083 - MER5A DNA MER1_type -15 174 62 203 375 83 0 chr3 9779538 9779634 -217744944 + MIR SINE MIR 34 137 -71 2281 64 0 3 chr3 9779665 9779979 -217744599 + AluY SINE Alu 1 313 0 21 57 0 0 chr3 9781800 9781835 -217742743 + AT_rich Low_complexity Low_complexity 1 35 0 62 26 0 0 chr3 9781965 9782041 -217742537 + AT_rich Low_complexity Low_complexity 1 76 0 225 185 31 0 chr3 9782067 9782132 -217742446 + L1MC4 LINE L1 6626 6692 -1350 29 28 0 0 chr3 9782710 9782746 -217741832 + AT_rich Low_complexity Low_complexity 1 36 0 321 127 0 0 chr3 9783144 9783199 -217741379 - L1PB3 LINE L1 -2 6152 6098 303 271 188 12 chr3 9783562 9783732 -217740846 - L1MC4a LINE L1 -1930 5878 5679 6010 192 35 16 chr3 9783789 9785088 -217739490 + L1MC3 LINE L1 6463 7785 0 1485 192 26 13 chr3 9785099 9785407 -217739171 + AluSx SINE Alu 1 312 0 407 306 100 11 chr3 9785453 9785724 -217738854 - L1MC4a LINE L1 -2236 5572 5278 204 305 7 28 chr3 9785868 9786009 -217738569 + T-rich Low_complexity Low_complexity 2 139 0 2244 112 0 7 chr3 9786087 9786391 -217738187 - AluSx SINE Alu -10 302 1 310 155 214 68 chr3 9786498 9786601 -217737977 + MLT1E2 LTR MaLR 1 118 -506 1663 230 10 38 chr3 9786601 9786992 -217737586 + MLT1E2 LTR MaLR 228 607 -19 2439 148 26 7 chr3 9788354 9788773 -217735805 - MSTA LTR MaLR -1 427 1 338 333 82 41 chr3 9789294 9789609 -217734969 - L1MC/D LINE L1 -1993 5815 5488 216 216 45 9 chr3 9789665 9789776 -217734802 + (TA)n Simple_repeat Simple_repeat 2 116 0 58 74 0 0 chr3 9789807 9789928 -217734650 + AT_rich Low_complexity Low_complexity 1 121 0 23 68 0 0 chr3 9790314 9790358 -217734220 + AT_rich Low_complexity Low_complexity 1 44 0 1684 257 138 4 chr3 9790430 9790951 -217733627 - MLT1E LTR MaLR -2 591 1 34 0 0 0 chr3 9791356 9791390 -217733188 + AT_rich Low_complexity Low_complexity 1 34 0 371 327 45 6 chr3 9791795 9791951 -217732627 + MIR SINE MIR 89 250 -12 272 331 49 22 chr3 9792067 9792251 -217732327 - MLT1K LTR MaLR 0 588 400 233 325 103 8 chr3 9792993 9793119 -217731459 + MIR SINE MIR 32 169 -93 631 274 68 0 chr3 9793563 9793753 -217730825 - MIR SINE MIR -13 249 47 306 0 0 0 chr3 9794011 9794045 -217730533 + (TA)n Simple_repeat Simple_repeat 2 35 0 2494 63 0 0 chr3 9794121 9794423 -217730155 - AluY SINE Alu -9 302 1 745 280 52 13 chr3 9795883 9796115 -217728463 - MIR SINE MIR -3 259 19 354 291 129 89 chr3 9796145 9796447 -217728131 - L2 LINE L2 -16 3256 2943 358 230 251 40 chr3 9796926 9797105 -217727473 - MIR SINE MIR -11 251 37 376 315 171 20 chr3 9798175 9798321 -217726257 - L3 LINE CR1 -98 1479 1312 414 302 86 14 chr3 9798598 9798820 -217725758 + MIR SINE MIR 11 248 -14 1630 205 19 35 chr3 9800175 9800546 -217724032 - MLT1A1 LTR MaLR 0 365 1 270 344 23 16 chr3 9800552 9800680 -217723898 - MIR SINE MIR -10 252 124 1102 251 111 60 chr3 9800680 9801201 -217723377 + MLT1H LTR MaLR 2 549 0 341 308 139 29 chr3 9801288 9801496 -217723082 - MIR SINE MIR -16 246 16 3991 62 318 0 chr3 9801711 9802337 -217722241 - LTR12 LTR ERV1 -1 825 1 582 333 155 16 chr3 9802473 9802906 -217721672 + L2 LINE L2 2817 3309 -4 621 204 23 11 chr3 9803014 9803190 -217721388 + CT-rich Low_complexity Low_complexity 3 180 0 212 123 0 68 chr3 9803190 9803263 -217721315 + (TTTTC)n Simple_repeat Simple_repeat 1 68 0 1569 199 6 28 chr3 9803266 9803583 -217720995 - AluJb SINE Alu 0 312 3 211 321 37 12 chr3 9803687 9803768 -217720810 + MIR SINE MIR 111 193 -69 724 189 101 0 chr3 9803787 9803956 -217720622 + MLT2B1 LTR ERVL 1 186 -334 216 0 0 0 chr3 9804405 9804429 -217720149 + (T)n Simple_repeat Simple_repeat 1 24 0 321 215 103 28 chr3 9804493 9804600 -217719978 - MER69A DNA AcHobo -19 158 44 187 81 135 27 chr3 9805017 9805054 -217719524 + MIR SINE MIR 211 251 -11 1807 179 52 0 chr3 9805054 9805379 -217719199 + MER7A DNA MER2_type 2 341 -5 25 0 0 0 chr3 9805744 9805769 -217718809 + AT_rich Low_complexity Low_complexity 1 25 0 211 286 0 0 chr3 9806656 9806712 -217717866 + MIR3 SINE MIR 126 181 -27 592 287 32 57 chr3 9807658 9807937 -217716641 - MLT1K LTR MaLR -176 412 141 3575 137 20 18 chr3 9807957 9808554 -217716024 - Tigger3(Golem) DNA MER2_type -1 3028 2431 415 267 64 56 chr3 9808968 9809361 -217715217 + L1ME2 LINE L1 672 1067 -5138 314 268 78 39 chr3 9809444 9809649 -217714929 + L1ME2 LINE L1 1061 1273 -4840 586 297 66 34 chr3 9809822 9810142 -217714436 + L1ME2 LINE L1 1576 1905 -4491 459 285 6 0 chr3 9810175 9810347 -217714231 + L1ME2 LINE L1 4447 4619 -1596 2318 254 78 40 chr3 9811000 9811574 -217713004 + L1ME2 LINE L1 4621 5172 -1061 1470 158 18 108 chr3 9811574 9811915 -217712663 + AluJo SINE Alu 1 310 -2 2318 254 78 40 chr3 9811915 9812898 -217711680 + L1ME2 LINE L1 5172 6233 0 611 252 103 13 chr3 9814195 9814429 -217710149 - MLT1J LTR MaLR -239 272 18 23 54 0 0 chr3 9814649 9814686 -217709892 + AT_rich Low_complexity Low_complexity 1 37 0 207 219 0 0 chr3 9814734 9814775 -217709803 + (TA)n Simple_repeat Simple_repeat 1 41 0 212 31 62 0 chr3 9814776 9814808 -217709770 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1873 131 0 0 chr3 9814844 9815103 -217709475 - AluSq SINE Alu -54 259 1 22 0 0 0 chr3 9815103 9815125 -217709453 + AT_rich Low_complexity Low_complexity 1 22 0 346 214 11 11 chr3 9816816 9816905 -217707673 + Charlie8 DNA MER1_type 42 130 -2287 192 77 0 0 chr3 9816905 9816931 -217707647 + (GCTTG)n Simple_repeat Simple_repeat 2 27 0 2067 127 0 22 chr3 9816953 9817269 -217707309 - AluSc SINE Alu 0 309 1 225 0 0 0 chr3 9817292 9817317 -217707261 + (A)n Simple_repeat Simple_repeat 1 25 0 754 283 8 53 chr3 9817570 9817631 -217706947 - MIR SINE MIR -22 240 178 2197 94 0 7 chr3 9817631 9817919 -217706659 + AluSq SINE Alu 20 305 -8 754 283 8 53 chr3 9817919 9818101 -217706477 - MIR SINE MIR -84 178 8 727 210 23 17 chr3 9818426 9818602 -217705976 + MER45A DNA AcHobo 1 177 -1 357 263 111 10 chr3 9818631 9818730 -217705848 + L2 LINE L2 3202 3310 -3 * 717 274 42 34 chr3 9818729 9818748 -217705830 + MIR SINE MIR 17 34 -228 747 237 32 27 chr3 9818748 9818967 -217705611 - MER58A DNA MER1_type -4 220 1 717 274 42 34 chr3 9818967 9819184 -217705394 + MIR SINE MIR 34 255 -7 264 180 80 0 chr3 9819453 9819503 -217705075 + MIR3 SINE MIR 106 159 -49 342 294 164 36 chr3 9820095 9820645 -217703933 + L2 LINE L2 2602 3313 0 315 71 0 0 chr3 9820897 9820939 -217703639 + (CA)n Simple_repeat Simple_repeat 1 42 0 280 370 106 68 chr3 9820981 9821303 -217703275 - L2 LINE L2 -19 3253 2920 213 278 43 52 chr3 9822277 9822392 -217702186 - MIR SINE MIR -69 193 80 408 323 107 15 chr3 9822721 9822984 -217701594 - Charlie8 DNA MER1_type -2130 287 1 204 191 24 0 chr3 9823487 9823529 -217701049 + MIR SINE MIR 105 147 -61 5577 122 28 0 chr3 9823567 9824683 -217699895 - L1PA13 LINE L1 -12 6151 5036 3638 238 125 23 chr3 9824683 9824953 -217699625 - L1P LINE L1 -2695 3451 3210 297 0 0 0 chr3 9824953 9824986 -217699592 + (TG)n Simple_repeat Simple_repeat 2 34 0 3638 238 125 23 chr3 9824986 9826168 -217698410 - L1P LINE L1 -2936 3210 1851 239 153 0 68 chr3 9826168 9826227 -217698351 + CT-rich Low_complexity Low_complexity 4 58 0 22 0 0 0 chr3 9827960 9827982 -217696596 + AT_rich Low_complexity Low_complexity 1 22 0 198 265 0 20 chr3 9828628 9828677 -217695901 + L3b LINE CR1 1535 1582 -1 246 347 153 6 chr3 9829916 9830092 -217694486 + MIR SINE MIR 28 229 -33 * 637 265 28 84 chr3 9830072 9830321 -217694257 + MIR SINE MIR 18 252 -10 465 213 32 0 chr3 9831338 9831432 -217693146 + MER5A DNA MER1_type 9 105 -84 1973 126 3 10 chr3 9831449 9831751 -217692827 + AluSx SINE Alu 1 300 -12 1540 236 79 34 chr3 9831871 9832312 -217692266 - MLT1D LTR MaLR -44 461 1 758 296 17 17 chr3 9832795 9833035 -217691543 + MIR SINE MIR 13 252 -10 189 0 0 0 chr3 9833051 9833072 -217691506 + (TTA)n Simple_repeat Simple_repeat 1 21 0 252 0 0 0 chr3 9833936 9833964 -217690614 + (TG)n Simple_repeat Simple_repeat 2 29 0 27 0 0 0 chr3 9834291 9834318 -217690260 + AT_rich Low_complexity Low_complexity 1 27 0 298 175 0 0 chr3 9834440 9834503 -217690075 - MER97c DNA MER1_type? -37 1053 991 716 158 15 8 chr3 9834511 9834644 -217689934 - MER97a DNA MER1_type? -561 333 200 681 256 63 29 chr3 9834656 9834863 -217689715 + MER58A DNA MER1_type 10 223 -1 612 235 60 0 chr3 9834863 9835012 -217689566 - MER97b DNA MER1_type? -848 205 48 198 67 0 0 chr3 9839054 9839065 -217685513 + (TAAAAA)n Simple_repeat Simple_repeat 1 11 -19 5011 45 0 0 chr3 9839065 9839669 -217684909 + L1PA5 LINE L1 5549 6152 -2 198 67 0 0 chr3 9839669 9839687 -217684891 + (TAAAAA)n Simple_repeat Simple_repeat 10 30 0 278 276 0 51 chr3 9839703 9839801 -217684777 + L2 LINE L2 3221 3313 0 256 364 119 7 chr3 9839847 9839990 -217684588 + MIR3 SINE MIR 16 174 -34 233 330 43 0 chr3 9840493 9840587 -217683991 - MIR SINE MIR -91 117 20 585 0 0 0 chr3 9841140 9841205 -217683373 + (TC)n Simple_repeat Simple_repeat 1 65 0 2102 124 36 30 chr3 9841444 9841806 -217682772 + THE1B LTR MaLR 1 364 0 289 308 226 0 chr3 9842090 9842236 -217682342 + MIR SINE MIR 65 243 -19 235 286 65 13 chr3 9842280 9842357 -217682221 + MIR3 SINE MIR 110 190 -18 24 32 0 0 chr3 9842357 9842388 -217682190 + AT_rich Low_complexity Low_complexity 1 31 0 2236 92 0 13 chr3 9842399 9842702 -217681876 + AluSx SINE Alu 1 299 -13 520 252 58 22 chr3 9844354 9844493 -217680085 + MER5A DNA MER1_type 14 157 -32 3702 261 96 38 chr3 9844493 9845164 -217679414 - L1M LINE L1 -840 5306 4675 180 0 0 0 chr3 9845164 9845184 -217679394 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 3702 261 96 38 chr3 9845184 9846482 -217678096 - L1M LINE L1 -1471 4675 3137 457 287 9 0 chr3 9846482 9846597 -217677981 - FLAM_A SINE Alu -17 116 1 3702 261 96 38 chr3 9846597 9847154 -217677424 - L1M LINE L1 -3009 3137 2614 229 237 17 17 chr3 9847159 9847218 -217677360 + MER5A DNA MER1_type 130 188 -1 465 271 52 42 chr3 9847611 9847803 -217676775 + MIR SINE MIR 68 261 -1 481 292 55 24 chr3 9849297 9849551 -217675027 - L1MC4a LINE L1 -321 5800 5670 332 301 134 29 chr3 9849584 9849875 -217674703 - L1ME LINE L1 -394 5727 5391 302 325 53 33 chr3 9850461 9850612 -217673966 + L2 LINE L2 3160 3313 0 237 94 57 57 chr3 9851677 9851730 -217672848 - L1ME4a LINE L1 -2 6119 6067 23 78 0 0 chr3 9852301 9852352 -217672226 + AT_rich Low_complexity Low_complexity 1 51 0 2511 75 0 0 chr3 9852582 9852890 -217671688 - AluY SINE Alu -3 308 1 290 274 102 47 chr3 9852895 9853110 -217671468 - HAL1 LINE L1 0 2507 2281 269 256 26 17 chr3 9853175 9853292 -217671286 - HAL1 LINE L1 -347 2160 2043 345 285 34 53 chr3 9853478 9853685 -217670893 - HAL1 LINE L1 -710 1797 1595 697 257 171 71 chr3 9853896 9854444 -217670134 - HAL1 LINE L1 -916 1591 989 274 309 141 28 chr3 9854535 9854784 -217669794 - HAL1 LINE L1 -1632 875 599 2532 27 0 0 chr3 9854997 9855294 -217669284 - L1HS LINE L1 0 6155 5859 250 256 158 0 chr3 9855692 9855774 -217668804 - L1ME LINE L1 -519 5602 5508 335 219 126 60 chr3 9855894 9856045 -217668533 - L1ME LINE L1 -767 5379 5219 2188 121 0 3 chr3 9861248 9861545 -217663033 - AluSx SINE Alu -16 296 1 253 241 0 17 chr3 9862309 9862367 -217662211 + MLT1J LTR MaLR 113 169 -342 2229 108 23 0 chr3 9862574 9862879 -217661699 - AluSx SINE Alu 0 312 1 585 288 100 39 chr3 9862879 9863149 -217661429 + MLT1L LTR MaLR 316 605 -10 287 298 12 0 chr3 9863160 9863244 -217661334 + L2 LINE L2 3185 3269 -3 198 0 0 0 chr3 9863566 9863588 -217660990 + (GA)n Simple_repeat Simple_repeat 1 22 0 248 251 96 107 chr3 9864072 9864259 -217660319 - L2 LINE L2 0 3313 3129 2858 268 66 40 chr3 9864259 9864742 -217659836 - L1M4 LINE L1 -5245 1297 828 229 25 0 50 chr3 9864742 9864782 -217659796 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2858 268 66 40 chr3 9864782 9865561 -217659017 - L1M4 LINE L1 -5714 828 2 2174 298 80 58 chr3 9865564 9866865 -217657713 - L2 LINE L2 -175 3138 1824 242 340 35 42 chr3 9868902 9869046 -217655532 - L2 LINE L2 -237 3035 2893 632 245 57 38 chr3 9869490 9869780 -217654798 - L1ME3 LINE L1 -5 6165 5861 203 147 0 0 chr3 9869799 9869833 -217654745 + (TG)n Simple_repeat Simple_repeat 1 34 0 1477 212 36 34 chr3 9869837 9870223 -217654355 - MER39 LTR ERV1 -1 706 320 296 222 46 65 chr3 9870213 9870321 -217654257 - LTR48B LTR ERV1 -538 106 1 * 351 0 0 0 chr3 9870332 9870371 -217654207 + (TG)n Simple_repeat Simple_repeat 1 39 0 564 207 42 0 chr3 9870374 9870512 -217654066 - L1ME2 LINE L1 -279 5885 5739 200 308 64 0 chr3 9871887 9871965 -217652613 - MIR SINE MIR -98 164 82 2185 112 37 31 chr3 9872058 9872441 -217652137 - L1PB1 LINE L1 -5 6146 5762 564 284 73 32 chr3 9872575 9872904 -217651674 - LTR16A1 LTR ERVL 0 457 80 307 344 23 0 chr3 9873057 9873185 -217651393 - MERVL LTR ERVL -2634 2851 2721 287 256 49 77 chr3 9873228 9873398 -217651180 - MERVL LTR ERVL -2372 2624 2461 316 289 22 0 chr3 9873608 9873698 -217650880 - MERVL LTR ERVL -2639 2357 2266 844 283 129 37 chr3 9873699 9874102 -217650476 - MERVL LTR ERVL -2865 2131 1692 744 339 55 31 chr3 9874305 9874721 -217649857 - MERVL LTR ERVL -3835 1161 736 821 158 49 54 chr3 9875001 9875185 -217649393 - MER5A DNA MER1_type -6 183 1 419 248 20 10 chr3 9875185 9875286 -217649292 - LTR16A1 LTR ERVL -341 116 15 2047 109 49 0 chr3 9876217 9876501 -217648077 + AluSx SINE Alu 1 298 -14 362 294 112 18 chr3 9876560 9876730 -217647848 + L2 LINE L2 3112 3297 -16 191 170 21 0 chr3 9877013 9877060 -217647518 + GA-rich Low_complexity Low_complexity 4 51 0 230 349 63 32 chr3 9877347 9877473 -217647105 + MER5A DNA MER1_type 51 180 -9 406 353 47 26 chr3 9877495 9877727 -217646851 - MIR SINE MIR -6 256 20 21 36 0 0 chr3 9879264 9879292 -217645286 + AT_rich Low_complexity Low_complexity 1 28 0 200 300 8 42 chr3 9879373 9879493 -217645085 + (TATG)n Simple_repeat Simple_repeat 3 118 0 320 319 7 0 chr3 9879493 9879634 -217644944 - MER113 DNA MER1_type? -378 143 2 738 327 57 71 chr3 9879941 9880103 -217644475 + L2 LINE L2 2729 2892 -421 1984 145 42 31 chr3 9880103 9880462 -217644116 + THE1B LTR MaLR 1 363 -1 738 327 57 71 chr3 9880462 9880874 -217643704 + L2 LINE L2 2892 3313 0 215 376 0 0 chr3 9881613 9881714 -217642864 - L2 LINE L2 -706 2608 2508 1255 128 0 5 chr3 9882250 9882445 -217642133 + L1PB1 LINE L1 1 194 -6669 13014 163 69 6 chr3 9882447 9887710 -217636868 + L1PB1 LINE L1 905 6507 -360 252 0 0 0 chr3 9887776 9887804 -217636774 + (CA)n Simple_repeat Simple_repeat 2 29 0 2366 126 6 0 chr3 9887805 9888161 -217636417 + L1PB1 LINE L1 6508 6865 -2 22 0 0 0 chr3 9888161 9888183 -217636395 + AT_rich Low_complexity Low_complexity 1 22 0 2017 161 41 19 chr3 9889901 9890268 -217634310 - THE1C LTR MaLR 0 375 1 327 268 263 24 chr3 9891364 9891569 -217633009 - MIR SINE MIR -3 259 6 363 298 0 0 chr3 9892050 9892144 -217632434 - MER117 DNA MER1_type -35 162 69 700 273 11 32 chr3 9892245 9892432 -217632146 - MER5A DNA MER1_type -6 183 1 643 290 40 24 chr3 9892444 9892696 -217631882 + MIR SINE MIR 7 262 0 1817 146 69 0 chr3 9892886 9893174 -217631404 - AluJo SINE Alu -4 308 1 2821 112 17 0 chr3 9893751 9894170 -217630408 - L1PA13 LINE L1 0 6163 5738 21 36 0 0 chr3 9894170 9894198 -217630380 + AT_rich Low_complexity Low_complexity 1 28 0 2574 150 31 10 chr3 9894239 9894726 -217629852 + L1MA5 LINE L1 5802 6298 -2 1995 126 0 29 chr3 9894934 9895243 -217629335 - AluSx SINE Alu -12 300 1 311 276 181 29 chr3 9897564 9897774 -217626804 - MIR SINE MIR -5 257 16 303 273 201 19 chr3 9898156 9898310 -217626268 - MLT1J2 LTR MaLR -4 446 265 915 217 0 48 chr3 9898310 9898499 -217626079 + MER5A DNA MER1_type 9 188 -1 2499 111 67 7 chr3 9899895 9900299 -217624279 + MSTA LTR MaLR 1 428 0 216 0 0 0 chr3 9900998 9901022 -217623556 + (A)n Simple_repeat Simple_repeat 1 24 0 1711 179 43 156 chr3 9901118 9901699 -217622879 + MLT2B3 LTR ERVL 1 509 -45 500 0 17 0 chr3 9901699 9901759 -217622819 + (CA)n Simple_repeat Simple_repeat 1 61 0 1711 179 43 156 chr3 9901759 9901799 -217622779 + MLT2B3 LTR ERVL 509 552 -2 2917 247 26 1 chr3 9901799 9902488 -217622090 + HERVL-B3 LTR ERVL 64 769 -4885 1205 248 8 0 chr3 9902488 9902734 -217621844 - ERVL LTR ERVL -5116 648 401 18710 174 20 14 chr3 9902736 9905956 -217618622 + HERVL-B3 LTR ERVL 811 4054 -1710 1993 154 0 3 chr3 9905956 9906261 -217618317 - AluJb SINE Alu -8 304 1 18710 174 20 14 chr3 9906261 9906349 -217618229 + HERVL-B3 LTR ERVL 4054 4140 -1624 695 232 0 96 chr3 9906363 9906573 -217618005 + MLT2B3 LTR ERVL 282 359 -94 396 0 0 0 chr3 9906579 9906623 -217617955 + (CA)n Simple_repeat Simple_repeat 1 44 0 31 58 0 0 chr3 9906651 9906703 -217617875 + AT_rich Low_complexity Low_complexity 1 52 0 259 167 0 0 chr3 9906713 9906761 -217617817 + MLT2B3 LTR ERVL 473 520 0 487 293 94 69 chr3 9907119 9907525 -217617053 + Charlie8 DNA MER1_type 3 418 -1999 262 204 0 0 chr3 9907603 9907657 -217616921 + Charlie8 DNA MER1_type 1360 1413 -1004 450 268 58 0 chr3 9908153 9908291 -217616287 - MER103 DNA DNA -4 162 17 2002 136 23 3 chr3 9908497 9908798 -217615780 + AluSx SINE Alu 4 310 -2 348 43 0 0 chr3 9908868 9908914 -217615664 + (TG)n Simple_repeat Simple_repeat 2 47 0 2141 102 7 16 chr3 9908992 9909295 -217615283 - AluSx SINE Alu -10 302 3 200 292 0 0 chr3 9909401 9909449 -217615129 + L2 LINE L2 3217 3264 -8 324 0 0 0 chr3 9909796 9909832 -217614746 + (TG)n Simple_repeat Simple_repeat 1 36 0 208 171 0 24 chr3 9910497 9910538 -217614040 + CT-rich Low_complexity Low_complexity 3 42 0 302 191 75 21 chr3 9911288 9911382 -217613196 - LTR67 LTR ERVL 0 557 459 180 0 0 0 chr3 9912000 9912020 -217612558 + (CA)n Simple_repeat Simple_repeat 2 21 0 1535 175 45 31 chr3 9912504 9912796 -217611782 + AluJo SINE Alu 1 296 -16 40 49 0 0 chr3 9912796 9912857 -217611721 + AT_rich Low_complexity Low_complexity 1 61 0 255 289 164 38 chr3 9913258 9913521 -217611057 - L1ME LINE L1 -451 5713 5418 23 68 0 0 chr3 9914155 9914199 -217610379 + AT_rich Low_complexity Low_complexity 1 44 0 317 330 117 61 chr3 9914514 9914904 -217609674 - L1MEc LINE L1 -745 1745 1326 286 276 109 38 chr3 9914959 9915169 -217609409 - L1MEc LINE L1 -4930 1189 965 261 243 0 0 chr3 9915306 9915376 -217609202 + (TA)n Simple_repeat Simple_repeat 1 70 0 306 389 25 33 chr3 9915440 9915684 -217608894 - L1MEc LINE L1 -5389 730 489 344 307 62 64 chr3 9915746 9916104 -217608474 - L1MEc LINE L1 -5758 361 5 220 264 0 0 chr3 9917596 9917668 -217606910 + A-rich Low_complexity Low_complexity 1 72 0 277 366 0 11 chr3 9918451 9918544 -217606034 + L2 LINE L2 3173 3264 -8 1172 209 21 8 chr3 9918717 9918956 -217605622 - AluJo SINE Alu -14 298 57 587 303 34 0 chr3 9919102 9919277 -217605301 - MLT1J LTR MaLR -330 181 1 354 378 31 0 chr3 9919344 9919471 -217605107 + L2 LINE L2 3141 3271 -1 549 157 0 0 chr3 9920017 9920100 -217604478 + THE1B LTR MaLR 2 84 -280 994 141 59 29 chr3 9920104 9920274 -217604304 + THE1B LTR MaLR 190 364 0 285 241 157 19 chr3 9920879 9920987 -217603591 - MER5C DNA MER1_type -200 124 2 240 303 9 28 chr3 9921186 9921295 -217603283 - MIR SINE MIR -4 258 152 206 313 16 16 chr3 9921374 9921438 -217603140 - MIR SINE MIR -186 76 13 250 329 36 21 chr3 9921794 9921934 -217602644 - L2 LINE L2 -871 2443 2302 21 0 0 0 chr3 9923014 9923035 -217601543 + AT_rich Low_complexity Low_complexity 1 21 0 806 222 45 15 chr3 9923438 9923636 -217600942 + MER3 DNA MER1_type 6 209 0 194 349 85 21 chr3 9923696 9923885 -217600693 + MIR SINE MIR 57 257 -5 22 0 0 0 chr3 9923902 9923924 -217600654 + AT_rich Low_complexity Low_complexity 1 22 0 815 241 11 0 chr3 9923934 9924125 -217600453 - AluJo SINE Alu -107 205 13 2203 84 0 40 chr3 9924126 9924449 -217600129 - AluSq SINE Alu 0 311 1 198 304 29 0 chr3 9924510 9924579 -217599999 + MIR SINE MIR 83 153 -109 209 293 17 0 chr3 9924678 9924736 -217599842 + L2 LINE L2 2596 2654 -660 2258 102 0 7 chr3 9924873 9925176 -217599402 - AluSg SINE Alu -9 301 1 675 229 102 54 chr3 9926240 9926445 -217598133 + MER58A DNA MER1_type 10 224 0 902 189 14 78 chr3 9926453 9926670 -217597908 - MER20 DNA MER1_type -16 203 1 26 50 0 0 chr3 9928345 9928385 -217596193 + AT_rich Low_complexity Low_complexity 1 40 0 358 309 58 29 chr3 9928401 9928644 -217595934 - L1MC5 LINE L1 -83 7878 7629 1696 149 3 68 chr3 9928728 9929049 -217595529 - AluSx SINE Alu -10 302 3 23 33 0 0 chr3 9930844 9930874 -217593704 + AT_rich Low_complexity Low_complexity 1 30 0 260 329 21 35 chr3 9931007 9931150 -217593428 - L2 LINE L2 0 3313 3173 607 250 0 0 chr3 9931274 9931422 -217593156 + MIR SINE MIR 100 247 -15 241 366 46 15 chr3 9932161 9932292 -217592286 + L2 LINE L2 3133 3267 -5 1925 164 0 0 chr3 9933688 9933987 -217590591 - AluSx SINE Alu -13 299 1 1420 190 29 3 chr3 9934093 9934409 -217590169 - MER33 DNA MER1_type 0 324 1 25 0 0 0 chr3 9934862 9934887 -217589691 + AT_rich Low_complexity Low_complexity 1 25 0 2432 90 0 0 chr3 9934948 9935258 -217589320 - AluY SINE Alu -1 310 1 503 330 22 22 chr3 9935393 9935666 -217588912 + L1ME3A LINE L1 5659 5931 -239 189 0 0 0 chr3 9935723 9935744 -217588834 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 9008 232 93 21 chr3 9935943 9940911 -217583667 - L1PA16 LINE L1 -20 6849 1438 3708 53 0 0 chr3 9940921 9941377 -217583201 + L1PA5 LINE L1 5696 6151 -3 1325 216 49 54 chr3 9941783 9942153 -217582425 - L1PA16 LINE L1 -6038 811 444 393 341 71 66 chr3 9942175 9942386 -217582192 - L1M2 LINE L1 -6064 785 574 1245 311 35 14 chr3 9942896 9943327 -217581251 - L1M2 LINE L1 -6399 450 11 221 327 120 33 chr3 9943412 9943562 -217581016 - L3 LINE CR1 -834 743 581 407 280 38 71 chr3 9943627 9943838 -217580740 - MIR SINE MIR -38 224 21 2283 114 0 0 chr3 9944416 9944714 -217579864 + AluSq SINE Alu 4 301 -12 1263 148 8 25 chr3 9945107 9945141 -217579437 + L1MA5A LINE L1 6049 6082 -215 2350 135 25 0 chr3 9945141 9945496 -217579082 + THE1B LTR MaLR 1 364 0 1263 148 8 25 chr3 9945496 9945704 -217578874 + L1MA5A LINE L1 6082 6287 -10 1419 188 35 22 chr3 9947046 9947365 -217577213 + L1MA3 LINE L1 5983 6305 0 847 190 66 28 chr3 9947381 9947592 -217576986 + MER20 DNA MER1_type 1 219 0 188 234 125 31 chr3 9947879 9947943 -217576635 - L2 LINE L2 -12 3301 3232 414 296 63 25 chr3 9948016 9948175 -217576403 + L3 LINE CR1 1286 1450 -127 189 107 0 0 chr3 9948283 9948311 -217576267 + (TA)n Simple_repeat Simple_repeat 1 28 0 567 222 31 43 chr3 9948337 9948499 -217576079 - MER45A DNA AcHobo -18 160 1 327 85 0 0 chr3 9948825 9948872 -217575706 + (TAA)n Simple_repeat Simple_repeat 2 48 0 515 254 122 24 chr3 9949071 9949190 -217575388 + MIR SINE MIR 22 128 -134 1984 160 41 55 chr3 9949190 9949628 -217574950 + MSTB1 LTR MaLR 1 432 0 515 254 122 24 chr3 9949628 9949713 -217574865 + MIR SINE MIR 128 246 -16 263 379 49 10 chr3 9949751 9949954 -217574624 + MIR SINE MIR 13 223 -39 457 312 83 0 chr3 9950435 9950592 -217573986 + MIR SINE MIR 32 201 -61 24 32 0 0 chr3 9952985 9953016 -217571562 + AT_rich Low_complexity Low_complexity 1 31 0 528 241 0 0 chr3 9953280 9953454 -217571124 + (TA)n Simple_repeat Simple_repeat 2 175 0 282 56 0 0 chr3 9953491 9953527 -217571051 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 506 345 24 0 chr3 9953642 9953810 -217570768 - MER5B DNA MER1_type -6 172 1 24 0 0 0 chr3 9954458 9954482 -217570096 + AT_rich Low_complexity Low_complexity 1 24 0 832 112 28 0 chr3 9955016 9955159 -217569419 - L1MA5A LINE L1 -3 6294 6148 24 32 0 0 chr3 9955624 9955655 -217568923 + AT_rich Low_complexity Low_complexity 1 31 0 2384 72 0 0 chr3 9955886 9956176 -217568402 + AluY SINE Alu 1 290 -21 367 264 72 52 chr3 9956180 9956373 -217568205 - L1MC5 LINE L1 -49 7912 7716 248 214 45 45 chr3 9956458 9956547 -217568031 - L1ME LINE L1 -462 5659 5571 258 283 0 16 chr3 9957432 9957513 -217567065 - MIR SINE MIR -121 87 8 791 297 68 0 chr3 9957604 9957840 -217566738 - MIR SINE MIR -5 257 6 309 274 35 138 chr3 9958694 9959012 -217565566 - L1ME LINE L1 -1310 4836 4552 2142 103 0 0 chr3 9959233 9959562 -217565016 - AluY SINE Alu 0 329 1 367 301 133 25 chr3 9959727 9959929 -217564649 - Charlie8 DNA MER1_type -2141 276 93 1871 156 3 7 chr3 9959951 9960246 -217564332 + AluJb SINE Alu 1 294 -18 459 81 35 0 chr3 9960261 9960347 -217564231 + (CA)n Simple_repeat Simple_repeat 2 90 0 1065 236 129 63 chr3 9960499 9960957 -217563621 - MLT1D LTR MaLR 0 505 18 306 231 91 8 chr3 9961226 9961347 -217563231 - L1ME3A LINE L1 -208 5962 5832 608 325 44 0 chr3 9961363 9961612 -217562966 - L1ME3A LINE L1 -415 5755 5496 216 222 32 16 chr3 9961614 9961677 -217562901 + CT-rich Low_complexity Low_complexity 3 66 0 256 48 48 0 chr3 9961682 9961724 -217562854 + (TC)n Simple_repeat Simple_repeat 2 45 0 207 0 0 0 chr3 9962648 9962671 -217561907 + (CA)n Simple_repeat Simple_repeat 2 24 0 194 337 40 0 chr3 9963669 9963770 -217560808 + MIR SINE MIR 108 212 -50 231 340 14 62 chr3 9963965 9964109 -217560469 - MIR SINE MIR -116 146 10 279 240 53 0 chr3 9964404 9964479 -217560099 + MIR SINE MIR 86 164 -98 497 250 15 38 chr3 9965367 9965499 -217559079 - L2 LINE L2 0 3272 3144 232 354 67 45 chr3 9965729 9965952 -217558626 - L2 LINE L2 -373 2941 2714 432 300 42 55 chr3 9968439 9968676 -217555902 + MIR SINE MIR 1 234 -28 1086 137 5 105 chr3 9971541 9971760 -217552818 + AluJo SINE Alu 89 285 -27 448 240 85 0 chr3 9971818 9971947 -217552631 - MER58B DNA MER1_type 0 341 202 318 206 16 0 chr3 9972024 9972087 -217552491 + MER3 DNA MER1_type 83 146 -63 256 218 0 0 chr3 9972077 9972132 -217552446 + MER3 DNA MER1_type 151 205 -4 * 22 35 0 0 chr3 9972393 9972422 -217552156 + AT_rich Low_complexity Low_complexity 1 29 0 530 272 23 40 chr3 9973689 9973862 -217550716 + MIR SINE MIR 33 202 -60 201 171 0 0 chr3 9973954 9973989 -217550589 + A-rich Low_complexity Low_complexity 1 35 0 322 302 88 44 chr3 9974318 9974523 -217550055 - L2 LINE L2 0 3313 3100 228 204 161 86 chr3 9974569 9974662 -217549916 - MIR SINE MIR -82 180 81 30 45 0 0 chr3 9975395 9975439 -217549139 + AT_rich Low_complexity Low_complexity 1 44 0 1722 88 4 0 chr3 9975773 9975999 -217548579 - AluSp SINE Alu 0 313 87 413 310 44 96 chr3 9976049 9976478 -217548100 + L2 LINE L2 2856 3262 -10 26 0 0 0 chr3 9977189 9977215 -217547363 + AT_rich Low_complexity Low_complexity 1 26 0 304 312 11 0 chr3 9977419 9977512 -217547066 - MIR SINE MIR -109 153 60 197 242 32 74 chr3 9977500 9977595 -217546983 - MIR SINE MIR -134 128 38 * 687 284 38 30 chr3 9978704 9978856 -217545722 + MIR SINE MIR 13 169 -93 192 40 0 0 chr3 9978856 9978881 -217545697 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 687 284 38 30 chr3 9978881 9978964 -217545614 + MIR SINE MIR 169 250 -12 228 250 69 0 chr3 9979096 9979168 -217545410 - L1P4 LINE L1 -714 5452 5376 319 304 6 82 chr3 9979234 9979405 -217545173 - MIR SINE MIR -71 191 34 565 216 35 9 chr3 9979676 9979792 -217544786 + FLAM_A SINE Alu 4 122 -11 968 248 98 15 chr3 9980015 9980350 -217544228 + L1ME2 LINE L1 5362 5724 -440 1433 266 93 30 chr3 9980356 9980795 -217543783 + LTR40a LTR ERVL 5 471 -48 1027 250 146 8 chr3 9980808 9981192 -217543386 + L1ME2 LINE L1 5727 6163 -1 545 332 30 17 chr3 9981204 9981436 -217543142 + MIR SINE MIR 28 262 0 23 0 0 0 chr3 9981853 9981876 -217542702 + AT_rich Low_complexity Low_complexity 1 23 0 2138 126 0 3 chr3 9981986 9982288 -217542290 - AluSx SINE Alu -11 301 1 21 36 0 0 chr3 9982298 9982326 -217542252 + AT_rich Low_complexity Low_complexity 1 28 0 392 227 117 63 chr3 9982406 9982706 -217541872 + L1MEd LINE L1 941 1256 -4863 1053 258 95 58 chr3 9982807 9983303 -217541275 - ERVL LTR ERVL -783 4981 4468 2959 248 75 44 chr3 9983552 9984826 -217539752 - L1M4 LINE L1 -1544 4602 3370 1580 172 34 27 chr3 9984826 9985122 -217539456 - AluJb SINE Alu -14 298 1 2959 248 75 44 chr3 9985122 9985178 -217539400 - L1M4 LINE L1 -2776 3370 3317 2121 112 0 41 chr3 9985178 9985346 -217539232 - AluSq SINE Alu -12 301 150 2155 99 0 47 chr3 9985346 9985668 -217538910 - AluY SINE Alu -4 307 1 2121 112 0 41 chr3 9985668 9985813 -217538765 - AluSq SINE Alu -163 150 1 2959 248 75 44 chr3 9985813 9985967 -217538611 - L1M4 LINE L1 -2829 3317 3070 580 239 89 28 chr3 9985981 9986161 -217538417 - MER58C DNA MER1_type -1 214 24 418 269 96 90 chr3 9986270 9986582 -217537996 - L1ME LINE L1 -5480 590 277 180 0 0 0 chr3 9986586 9986606 -217537972 + (CAT)n Simple_repeat Simple_repeat 2 21 0 222 261 185 0 chr3 9986773 9986838 -217537740 - MIR SINE MIR -173 89 13 198 309 73 29 chr3 9986836 9986972 -217537606 + MIR SINE MIR 111 252 -10 * 182 361 21 10 chr3 9987103 9987200 -217537378 + L2 LINE L2 2562 2659 -655 26 0 0 0 chr3 9987200 9987226 -217537352 + AT_rich Low_complexity Low_complexity 1 26 0 692 359 51 19 chr3 9987666 9988078 -217536500 - L2 LINE L2 -461 2853 2429 533 273 98 30 chr3 9988078 9988514 -217536064 - LTR33 LTR ERVL 0 521 1 505 332 118 19 chr3 9988514 9988785 -217535793 - L2 LINE L2 -891 2423 2126 1555 246 47 13 chr3 9988807 9989254 -217535324 + LTR40b LTR ERVL 1 462 0 288 320 176 35 chr3 9989305 9989561 -217535017 - L2 LINE L2 -2791 523 232 279 325 119 6 chr3 9989570 9989730 -217534848 - L2 LINE L2 -2905 409 232 5419 198 35 9 chr3 9990165 9992150 -217532428 - L1PA15 LINE L1 -4 6161 4127 218 253 0 21 chr3 9992667 9992762 -217531816 + CT-rich Low_complexity Low_complexity 3 95 0 622 274 153 21 chr3 9992803 9993321 -217531257 - L1MC5 LINE L1 -64 7897 7312 326 244 17 52 chr3 9995032 9995147 -217529431 + MIR SINE MIR 138 248 -14 2257 100 7 3 chr3 9996118 9996427 -217528151 - AluSx SINE Alu -2 310 1 5005 35 0 3 chr3 9997414 9998009 -217526569 - L1PA3 LINE L1 0 6155 5563 556 238 103 33 chr3 9998009 9998223 -217526355 - MLT1L LTR MaLR -368 247 19 334 253 12 0 chr3 9998373 9998456 -217526122 + MER103 DNA DNA 65 148 -18 21 36 0 0 chr3 9998456 9998484 -217526094 + AT_rich Low_complexity Low_complexity 1 28 0 247 329 76 40 chr3 9998883 9999715 -217524863 + L1MC4a LINE L1 4372 5233 -913 1211 236 22 31 chr3 9999804 10000164 -217524414 + L1MC4a LINE L1 5342 5698 -2110 265 360 11 11 chr3 10000195 10000373 -217524205 + L1MC4a LINE L1 6414 6591 -1217 327 208 104 10 chr3 10000542 10000638 -217523940 - MER103 DNA DNA -10 156 52 188 389 44 0 chr3 10000888 10000978 -217523600 - L2 LINE L2 -5 3308 3215 190 333 0 49 chr3 10001083 10001164 -217523414 - L2 LINE L2 -262 3010 2934 388 310 117 28 chr3 10001230 10001472 -217523106 + MIR SINE MIR 3 262 0 261 0 0 0 chr3 10002228 10002257 -217522321 + (TG)n Simple_repeat Simple_repeat 2 30 0 242 211 0 0 chr3 10002600 10002652 -217521926 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 2909 196 63 114 chr3 10002823 10003752 -217520826 - MER21A LTR ERV1 -28 903 22 459 0 0 0 chr3 10003762 10003813 -217520765 + (TC)n Simple_repeat Simple_repeat 1 51 0 4653 246 74 25 chr3 10003927 10005542 -217519036 + L1MC4a LINE L1 6012 7705 -103 417 272 28 72 chr3 10006030 10006210 -217518368 - MIR SINE MIR -14 248 77 303 413 39 7 chr3 10006611 10006766 -217517812 - MIR3 SINE MIR -21 187 28 736 293 175 3 chr3 10007263 10007723 -217516855 + MLT1G1 LTR MaLR 5 594 -1 448 203 30 66 chr3 10009036 10009109 -217515469 + MER54A LTR ERVL 262 336 -489 1933 148 32 51 chr3 10009109 10009480 -217515098 - THE1B LTR MaLR 0 364 1 448 203 30 66 chr3 10009480 10009534 -217515044 + MER54A LTR ERVL 336 566 -259 270 0 0 0 chr3 10009803 10009833 -217514745 + (A)n Simple_repeat Simple_repeat 1 30 0 840 211 92 13 chr3 10011966 10012193 -217512385 - MLT2B1 LTR ERVL -275 245 1 410 287 73 90 chr3 10013441 10013728 -217510850 - L2 LINE L2 -440 2874 2595 563 222 102 40 chr3 10013728 10013904 -217510674 - MER5A DNA MER1_type -2 187 1 410 287 73 90 chr3 10013904 10014038 -217510540 - L2 LINE L2 -719 2595 2460 2441 67 10 3 chr3 10014252 10014550 -217510028 + AluY SINE Alu 1 300 -11 1269 161 0 9 chr3 10014499 10014710 -217509868 + AluSg/x SINE Alu 85 293 -19 211 322 61 17 chr3 10015850 10015965 -217508613 - L2 LINE L2 -8 3264 3145 215 372 80 9 chr3 10016589 10016702 -217507876 + L2 LINE L2 3151 3271 -1 2162 108 7 0 chr3 10016792 10017089 -217507489 - AluY SINE Alu -11 300 2 462 261 13 78 chr3 10018095 10018248 -217506330 + MIR SINE MIR 112 254 -8 1701 152 56 58 chr3 10018301 10018677 -217505901 + THE1C LTR MaLR 1 375 0 222 231 0 0 chr3 10019394 10019433 -217505145 - L2 LINE L2 -263 3050 3012 483 253 78 29 chr3 10019615 10019855 -217504723 + Charlie8 DNA MER1_type 63 1412 -1005 21 0 0 0 chr3 10020231 10020252 -217504326 + AT_rich Low_complexity Low_complexity 1 21 0 236 336 93 19 chr3 10020672 10020779 -217503799 + MIR SINE MIR 38 152 -110 1718 229 43 87 chr3 10020887 10021507 -217503071 - MLT1E2 LTR MaLR 0 626 1 2034 172 50 35 chr3 10021590 10022014 -217502564 + MSTB1 LTR MaLR 1 430 -2 377 176 0 0 chr3 10022656 10022724 -217501854 + L1M4 LINE L1 5585 5652 -532 803 229 76 36 chr3 10022798 10022889 -217501689 - MER110A LTR ERV1 0 468 382 1646 172 3 37 chr3 10022889 10023186 -217501392 + AluJo SINE Alu 1 287 -25 411 21 0 0 chr3 10023187 10023235 -217501343 + (GA)n Simple_repeat Simple_repeat 1 48 0 803 229 76 36 chr3 10023235 10023453 -217501125 - MER110A LTR ERV1 -85 383 170 376 226 59 0 chr3 10023536 10023638 -217500940 - MER110A LTR ERV1 -291 177 70 625 245 71 61 chr3 10025782 10025969 -217498609 + MIR SINE MIR 17 208 -54 2162 122 0 13 chr3 10025969 10026280 -217498298 + AluSc SINE Alu 1 307 -2 625 245 71 61 chr3 10026280 10026304 -217498274 + MIR SINE MIR 208 230 -32 201 268 63 35 chr3 10028655 10028778 -217495800 + MIR SINE MIR 23 154 -62 586 298 67 25 chr3 10029305 10029543 -217495035 - MIR SINE MIR -13 249 2 186 288 123 49 chr3 10029743 10029906 -217494672 - L2 LINE L2 -2 3270 3096 191 366 11 54 chr3 10030430 10030523 -217494055 - MER5A DNA MER1_type -3 186 98 1810 156 13 57 chr3 10030781 10031096 -217493482 - AluJb SINE Alu -11 301 1 434 297 58 0 chr3 10031189 10031327 -217493251 + MIR SINE MIR 46 191 -71 2360 97 0 3 chr3 10031609 10031919 -217492659 + AluY SINE Alu 1 309 -2 220 366 20 0 chr3 10032667 10032768 -217491810 - MIR SINE MIR -57 205 103 438 312 115 58 chr3 10032878 10033456 -217491122 - L2 LINE L2 -87 3226 2598 239 214 29 0 chr3 10033458 10033528 -217491050 + (TA)n Simple_repeat Simple_repeat 2 73 0 569 222 30 0 chr3 10033666 10033833 -217490745 - Charlie7 DNA MER1_type -253 2359 2188 310 268 65 14 chr3 10033996 10034134 -217490444 - Charlie7 DNA MER1_type -2120 492 348 214 211 19 106 chr3 10034192 10034296 -217490282 - MIR3 SINE MIR -17 191 97 245 226 19 0 chr3 10034328 10034381 -217490197 - L2 LINE L2 -38 3275 3222 1220 288 63 31 chr3 10034442 10034980 -217489598 + MLT1F1 LTR MaLR 11 565 -2 200 206 0 0 chr3 10035975 10036009 -217488569 + (ATG)n Simple_repeat Simple_repeat 3 36 0 1206 205 92 68 chr3 10036043 10036487 -217488091 + MSTB2 LTR MaLR 1 455 -2 4259 247 158 44 chr3 10036487 10038043 -217486535 + MLT1F1-int LTR MaLR 2 1735 0 1097 225 132 48 chr3 10038043 10038461 -217486117 + MSTB2 LTR MaLR 1 453 -4 270 0 0 0 chr3 10038562 10038592 -217485986 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 192 304 101 0 chr3 10038733 10038802 -217485776 - MIR SINE MIR -32 230 155 250 250 0 16 chr3 10038852 10038916 -217485662 + MER112 DNA MER1_type 12 74 -186 257 291 133 12 chr3 10039028 10039193 -217485385 - MIR SINE MIR -44 218 34 22 0 0 0 chr3 10039555 10039577 -217485001 + AT_rich Low_complexity Low_complexity 1 22 0 336 352 81 12 chr3 10040448 10040695 -217483883 + L1ME LINE L1 5485 5748 -373 21 57 0 0 chr3 10040773 10040808 -217483770 + AT_rich Low_complexity Low_complexity 1 35 0 257 375 27 9 chr3 10040819 10040931 -217483647 + L2 LINE L2 3199 3312 -1 180 0 0 0 chr3 10041116 10041136 -217483442 + (TA)n Simple_repeat Simple_repeat 1 20 0 298 337 189 0 chr3 10041372 10041541 -217483037 + MIR SINE MIR 49 249 -13 4347 249 61 27 chr3 10041668 10045679 -217478899 - L1MDb LINE L1 -2249 4157 17 941 239 79 98 chr3 10045882 10046664 -217477914 + L1MC4 LINE L1 7276 8042 0 566 290 49 27 chr3 10047416 10047599 -217476979 + MIR SINE MIR 20 206 -56 255 381 0 0 chr3 10048200 10048284 -217476294 + MIR SINE MIR 12 95 -167 430 315 147 23 chr3 10048631 10049113 -217475465 - MLT1H1 LTR MaLR -3 552 11 451 228 125 27 chr3 10049198 10049400 -217475178 - MIR SINE MIR 0 262 34 2328 80 3 0 chr3 10049479 10049766 -217474812 - AluY SINE Alu -13 298 11 409 250 17 26 chr3 10050811 10050927 -217473651 - MIR SINE MIR -15 247 133 355 329 21 14 chr3 10051175 10051318 -217473260 - MIR SINE MIR -72 190 47 254 376 62 1 chr3 10051708 10051929 -217472649 + MIR SINE MIR 17 249 -13 238 356 19 25 chr3 10051939 10052099 -217472479 - L3 LINE CR1 -387 1190 1032 223 303 45 34 chr3 10052106 10052195 -217472383 + MIR3 SINE MIR 98 187 -21 204 40 0 0 chr3 10052275 10052300 -217472278 + (TG)n Simple_repeat Simple_repeat 1 25 0 182 177 139 51 chr3 10052533 10052612 -217471966 - MIR SINE MIR -56 206 121 233 370 44 7 chr3 10053968 10054103 -217470475 + L2 LINE L2 2898 3037 -276 1393 240 61 16 chr3 10054132 10054511 -217470067 - MSTD LTR MaLR 0 396 1 5629 234 57 48 chr3 10054511 10056224 -217468354 - MSTD-int LTR MaLR 0 1735 9 1097 248 54 54 chr3 10056232 10056623 -217467955 - MSTD LTR MaLR 0 396 6 220 320 0 27 chr3 10056741 10056816 -217467762 + L2 LINE L2 3238 3310 -3 21 36 0 0 chr3 10058094 10058122 -217466456 + AT_rich Low_complexity Low_complexity 1 28 0 1227 198 115 114 chr3 10058642 10059188 -217465390 + MER44D DNA MER2_type 1 602 -3 181 333 51 62 chr3 10059343 10059520 -217465058 + L3b LINE CR1 1209 1383 -200 369 353 7 26 chr3 10060032 10060185 -217464393 + L2 LINE L2 3122 3271 -1 1446 203 33 0 chr3 10060368 10060674 -217463904 + MER58B DNA MER1_type 25 340 -1 1606 168 14 25 chr3 10061563 10061848 -217462730 + AluJo SINE Alu 1 282 -30 207 0 0 0 chr3 10061857 10061880 -217462698 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 219 150 0 0 chr3 10062266 10062306 -217462272 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 1246 203 21 0 chr3 10063179 10063460 -217461118 + L1MA4 LINE L1 6014 6300 0 321 324 145 6 chr3 10063682 10063861 -217460717 + MIR SINE MIR 57 260 -2 460 226 39 0 chr3 10064713 10064815 -217459763 + MIR SINE MIR 81 186 -76 744 181 44 93 chr3 10064958 10065184 -217459394 - MER20 DNA MER1_type -4 215 1 1560 174 9 76 chr3 10065564 10065892 -217458686 + AluJb SINE Alu 1 306 -6 2453 76 0 19 chr3 10065893 10066209 -217458369 + AluY SINE Alu 1 310 -1 1903 140 4 4 chr3 10067060 10067390 -217457188 - AluSx SINE Alu 0 336 7 250 286 0 0 chr3 10067536 10067592 -217456986 - MIR SINE MIR -155 107 52 412 228 100 74 chr3 10068656 10068857 -217455721 - MIR SINE MIR -47 215 14 1070 161 0 0 chr3 10068917 10069078 -217455500 + AluSg/x SINE Alu 135 295 -17 1161 260 91 61 chr3 10069418 10069926 -217454652 - MLT1G1 LTR MaLR -41 554 32 1812 188 46 6 chr3 10070998 10071349 -217453229 + MLT1A1 LTR MaLR 1 365 0 197 153 125 56 chr3 10072356 10072428 -217452150 - MIR SINE MIR -120 142 66 1046 216 35 109 chr3 10072447 10072850 -217451728 + MLT1A2 LTR MaLR 2 374 0 7696 23 0 0 chr3 10073819 10074979 -217449599 + L1PA3 LINE L1 4993 6152 -3 273 340 53 0 chr3 10074999 10075093 -217449485 + MER5A DNA MER1_type 35 133 -56 607 252 0 0 chr3 10075094 10075221 -217449357 - FLAM_A SINE Alu -6 127 1 9730 217 27 7 chr3 10075276 10078817 -217445761 - L1PA16 LINE L1 -27 6139 2542 245 297 16 0 chr3 10078958 10079022 -217445556 + L2 LINE L2 3204 3268 -4 227 247 34 45 chr3 10079182 10079271 -217445307 - L1ME LINE L1 -459 5662 5575 198 0 0 0 chr3 10079558 10079580 -217444998 + (TTG)n Simple_repeat Simple_repeat 2 23 0 6746 64 14 12 chr3 10079647 10081062 -217443516 - L1PA7 LINE L1 -3 6151 4739 8394 89 140 3 chr3 10081063 10082471 -217442107 - L1PA7 LINE L1 -1541 4605 3005 4308 107 5 32 chr3 10082467 10083212 -217441366 + L1PA7 LINE L1 2275 2999 -3147 * 2136 139 3 0 chr3 10083716 10084017 -217440561 - AluSx SINE Alu -10 302 1 652 257 89 25 chr3 10084021 10084223 -217440355 - MIR SINE MIR -45 217 3 232 250 117 0 chr3 10084223 10084280 -217440298 - MIR SINE MIR -61 147 84 216 97 0 0 chr3 10084989 10085020 -217439558 + (A)n Simple_repeat Simple_repeat 1 31 0 208 364 0 0 chr3 10085250 10085327 -217439251 + MIR SINE MIR 53 129 -133 344 351 0 0 chr3 10085501 10085578 -217439000 + MER91A DNA MER1_type 67 143 -53 198 364 0 11 chr3 10085811 10085899 -217438679 + MIR SINE MIR 9 95 -167 401 334 124 29 chr3 10085929 10086146 -217438432 - LTR16C LTR ERVL -63 428 170 1486 247 87 35 chr3 10086146 10086661 -217437917 + MLT1F LTR MaLR 1 542 0 401 334 124 29 chr3 10086661 10086757 -217437821 - LTR16C LTR ERVL -321 170 85 2160 137 0 6 chr3 10087802 10088115 -217436463 - AluSq SINE Alu -2 311 1 2403 86 0 3 chr3 10089098 10089400 -217435178 + AluSg1 SINE Alu 1 301 -8 2894 194 37 6 chr3 10089763 10090437 -217434141 + L1MB7 LINE L1 5471 6165 -19 447 248 4 26 chr3 10090504 10090705 -217433873 + L1ME3A LINE L1 5745 5940 -230 1676 229 31 11 chr3 10091482 10091940 -217432638 - MLT1C LTR MaLR 0 467 1 327 344 33 41 chr3 10091984 10092254 -217432324 + L2 LINE L2 2864 3131 -182 2231 109 7 0 chr3 10092255 10092549 -217432029 - AluSc SINE Alu -13 296 1 23 33 0 0 chr3 10092559 10092589 -217431989 + AT_rich Low_complexity Low_complexity 1 30 0 190 300 125 12 chr3 10092655 10092735 -217431843 + L2 LINE L2 3191 3279 -34 249 108 0 0 chr3 10092758 10092795 -217431783 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 272 292 56 0 chr3 10092906 10092995 -217431583 + MIR SINE MIR 66 159 -103 1434 183 44 7 chr3 10093862 10094136 -217430442 - AluJo SINE Alu -5 307 24 202 252 84 42 chr3 10094147 10094266 -217430312 + MIR SINE MIR 16 139 -123 196 308 112 95 chr3 10094366 10094429 -217430149 + L2 LINE L2 3099 3159 -113 681 237 25 30 chr3 10094429 10094665 -217429913 - MER106A DNA MER1_type -1 235 1 196 308 112 95 chr3 10094665 10094770 -217429808 + L2 LINE L2 3159 3270 -2 546 268 21 16 chr3 10095350 10095544 -217429034 + L1ME3A LINE L1 5942 6136 -34 371 253 133 19 chr3 10095602 10095760 -217428818 + MIR SINE MIR 87 262 0 231 265 41 20 chr3 10095896 10095994 -217428584 - L1MC4 LINE L1 -17 8025 7926 2630 43 0 0 chr3 10096898 10097201 -217427377 - AluY SINE Alu 0 311 9 592 256 6 36 chr3 10097234 10097402 -217427176 + MER5B DNA MER1_type 6 168 -10 2259 176 26 14 chr3 10097780 10098207 -217426371 + MSTB1 LTR MaLR 1 432 0 1280 227 68 49 chr3 10098763 10099191 -217425387 - MER63B DNA MER1_type 0 436 1 307 288 72 85 chr3 10099634 10099870 -217424708 - L1MC4a LINE L1 -1761 6047 5815 532 194 12 31 chr3 10099952 10100281 -217424297 + CT-rich Low_complexity Low_complexity 1 322 0 369 0 0 0 chr3 10100281 10100322 -217424256 + (TG)n Simple_repeat Simple_repeat 2 42 0 211 316 52 73 chr3 10100482 10100618 -217423960 + MIR SINE MIR 14 146 -116 244 399 21 7 chr3 10100620 10100763 -217423815 + MIR SINE MIR 2 146 -116 1470 259 42 24 chr3 10100764 10101263 -217423315 + LTR40a LTR ERVL 12 519 0 45 19 0 0 chr3 10101283 10101335 -217423243 + AT_rich Low_complexity Low_complexity 1 52 0 180 148 0 0 chr3 10101471 10101498 -217423080 + L2 LINE L2 3216 3242 -30 1578 148 26 26 chr3 10101501 10101812 -217422766 - THE1C LTR MaLR 0 375 65 8371 125 12 29 chr3 10101814 10103169 -217421409 - THE1C-int LTR MaLR -247 1333 2 2006 146 10 51 chr3 10103170 10103561 -217421017 - THE1C LTR MaLR 0 375 1 324 357 35 15 chr3 10104045 10104244 -217420334 - L2 LINE L2 -3 3310 3108 316 162 0 81 chr3 10104267 10104341 -217420237 - MLT1J2 LTR MaLR -38 412 345 505 274 22 15 chr3 10104704 10104839 -217419739 + MIR SINE MIR 16 151 -111 1686 205 55 3 chr3 10105705 10106052 -217418526 - MLT1A1 LTR MaLR 0 365 1 227 308 30 38 chr3 10106052 10106185 -217418393 + MIR SINE MIR 107 238 -24 397 310 51 112 chr3 10106245 10106619 -217417959 - L2 LINE L2 -4 3268 2918 182 365 49 71 chr3 10106672 10107039 -217417539 - L2 LINE L2 -510 2804 2446 26 30 0 0 chr3 10107441 10107474 -217417104 + AT_rich Low_complexity Low_complexity 1 33 0 184 169 14 141 chr3 10107611 10107682 -217416896 - L3b LINE CR1 -224 1359 1298 220 246 129 76 chr3 10107851 10108022 -217416556 + MIR SINE MIR 73 252 -10 480 304 19 19 chr3 10109136 10109297 -217415281 + MER5B DNA MER1_type 1 161 -17 1351 202 79 20 chr3 10109436 10109792 -217414786 - MLT1B LTR MaLR -11 379 3 475 227 213 13 chr3 10110208 10110358 -217414220 + MER5A DNA MER1_type 10 189 0 25 51 0 0 chr3 10110542 10110581 -217413997 + AT_rich Low_complexity Low_complexity 1 39 0 241 294 88 0 chr3 10111084 10111152 -217413426 + L2 LINE L2 3181 3254 -18 184 167 19 93 chr3 10111110 10111164 -217413414 + MIR SINE MIR 209 258 -4 * 23 33 0 0 chr3 10112048 10112078 -217412500 + AT_rich Low_complexity Low_complexity 1 30 0 207 284 45 34 chr3 10113560 10113648 -217410930 - L2 LINE L2 -40 3273 3185 469 309 176 5 chr3 10113927 10114137 -217410441 - MIR SINE MIR -2 260 15 27 0 0 0 chr3 10114347 10114374 -217410204 + AT_rich Low_complexity Low_complexity 1 27 0 261 343 25 29 chr3 10114426 10114572 -217410006 - MIR SINE MIR -46 162 16 211 293 40 27 chr3 10115009 10115084 -217409494 - L2 LINE L2 -68 3245 3170 237 360 20 39 chr3 10115346 10115499 -217409079 - L2 LINE L2 -548 2766 2617 200 369 72 18 chr3 10115658 10115769 -217408809 - L2 LINE L2 -793 2521 2405 198 0 0 0 chr3 10115807 10115829 -217408749 + (T)n Simple_repeat Simple_repeat 1 22 0 840 231 44 15 chr3 10115829 10116032 -217408546 - MER58A DNA MER1_type -15 209 1 22 35 0 0 chr3 10116059 10116088 -217408490 + AT_rich Low_complexity Low_complexity 1 29 0 541 196 40 111 chr3 10117028 10117169 -217407409 - LTR39 LTR ERV1 0 783 658 2256 112 3 3 chr3 10117169 10117481 -217407097 + AluSx SINE Alu 1 312 0 541 196 40 111 chr3 10117481 10117538 -217407040 - LTR39 LTR ERV1 -125 658 599 1197 176 43 79 chr3 10117590 10117919 -217406659 - LTR39 LTR ERV1 -456 327 11 816 153 13 38 chr3 10117964 10118121 -217406457 - THE1B LTR MaLR 0 364 212 6287 112 177 79 chr3 10118128 10119671 -217404907 + pTR5 LTR ERV1 743 2436 -2 1398 126 0 14 chr3 10119677 10119891 -217404687 - THE1B LTR MaLR -153 211 1 11499 96 9 2 chr3 10119891 10121461 -217403117 - THE1B-int LTR MaLR 0 1580 1 2328 133 3 35 chr3 10121461 10121837 -217402741 - THE1B LTR MaLR 0 364 1 789 253 6 6 chr3 10121921 10122099 -217402479 - MER5B DNA MER1_type 0 178 1 2167 94 0 11 chr3 10122241 10122527 -217402051 + AluY SINE Alu 1 283 -28 516 16 0 0 chr3 10122527 10122588 -217401990 + (TA)n Simple_repeat Simple_repeat 1 61 0 28 0 0 0 chr3 10123796 10123824 -217400754 + AT_rich Low_complexity Low_complexity 1 28 0 328 271 0 85 chr3 10123824 10123865 -217400713 - MLT1L LTR MaLR -181 434 391 2191 116 0 0 chr3 10123865 10124159 -217400419 - AluSg SINE Alu -14 296 3 328 271 0 85 chr3 10124159 10124235 -217400343 - MLT1L LTR MaLR -224 391 327 501 276 65 5 chr3 10126522 10126721 -217397857 - MLT1K LTR MaLR 0 588 378 679 222 99 0 chr3 10126907 10127078 -217397500 + MER5A DNA MER1_type 1 188 -1 229 316 0 13 chr3 10127086 10127162 -217397416 - MLT1K LTR MaLR -412 176 102 217 361 83 18 chr3 10127763 10127932 -217396646 - MER5A DNA MER1_type 0 189 10 * 238 340 110 0 chr3 10127929 10128029 -217396549 + MIR SINE MIR 12 122 -140 260 300 60 56 chr3 10132476 10132652 -217391926 - MER5B DNA MER1_type 0 178 12 363 299 31 0 chr3 10133097 10133224 -217391354 - MER117 DNA MER1_type -35 162 32 193 401 80 0 chr3 10133525 10133662 -217390916 - L2 LINE L2 -2 3270 3123 1955 238 31 53 chr3 10135858 10136229 -217388349 + L1ME1 LINE L1 5468 5817 -349 2121 128 0 0 chr3 10136229 10136518 -217388060 + AluSx SINE Alu 1 289 -23 1955 238 31 53 chr3 10136518 10136856 -217387722 + L1ME1 LINE L1 5817 6161 -5 213 283 17 0 chr3 10137021 10137081 -217387497 + MIR SINE MIR 202 262 0 207 361 84 40 chr3 10137167 10137416 -217387162 - L2 LINE L2 -410 2904 2645 834 257 10 5 chr3 10140022 10140228 -217384350 + MER58A DNA MER1_type 11 217 -7 611 325 94 35 chr3 10140237 10140717 -217383861 + L2 LINE L2 2805 3312 -1 411 344 0 21 chr3 10141052 10141293 -217383285 + L1ME LINE L1 5467 5702 -419 519 328 21 5 chr3 10141400 10141586 -217382992 - MIR SINE MIR -9 253 65 596 237 0 0 chr3 10141656 10141770 -217382808 + MIR SINE MIR 88 201 -61 917 300 132 26 chr3 10141796 10142338 -217382240 - L2 LINE L2 -14 3299 2687 227 309 0 15 chr3 10142346 10142414 -217382164 + MIR SINE MIR 186 252 -10 577 292 242 11 chr3 10143026 10143582 -217380996 - L2 LINE L2 0 3313 2625 366 261 59 59 chr3 10144006 10144125 -217380453 - MER91C DNA MER1_type -21 119 1 219 114 0 0 chr3 10144642 10144677 -217379901 + (TG)n Simple_repeat Simple_repeat 2 36 0 606 285 126 22 chr3 10144769 10145039 -217379539 - L2 LINE L2 0 3313 3016 1838 284 127 51 chr3 10145294 10146689 -217377889 - L2 LINE L2 -218 3095 1586 2167 169 70 5 chr3 10146724 10147126 -217377452 - MSTA LTR MaLR 0 428 1 437 211 78 0 chr3 10147126 10147216 -217377362 - MER58 DNA MER1_type -118 97 1 262 330 61 9 chr3 10148730 10148845 -217375733 - MIR3 SINE MIR -25 183 63 257 320 39 0 chr3 10150240 10150343 -217374235 + MIR SINE MIR 37 143 -65 205 290 65 43 chr3 10150657 10150750 -217373828 + L2 LINE L2 2852 2946 -326 1047 196 66 35 chr3 10150750 10151067 -217373511 + Charlie4a DNA MER1_type 181 507 -1 236 292 91 13 chr3 10151278 10151432 -217373146 - MLT1L LTR MaLR 0 615 450 189 0 0 0 chr3 10151784 10151805 -217372773 + (A)n Simple_repeat Simple_repeat 1 21 0 1021 215 11 76 chr3 10153490 10153872 -217370706 - LTR37A LTR ERV1 -52 374 18 1798 238 68 100 chr3 10153908 10155075 -217369503 - MER31-int LTR ERV1 -692 4244 3116 211 361 41 10 chr3 10155290 10155387 -217369191 - MER5B DNA MER1_type -78 100 1 853 235 27 23 chr3 10155480 10155701 -217368877 - MER58A DNA MER1_type -2 222 1 2106 116 0 20 chr3 10156234 10156537 -217368041 - AluSx SINE Alu -14 298 2 248 298 43 0 chr3 10157012 10157106 -217367472 + Charlie1 DNA MER1_type 2635 2732 -29 5831 107 19 0 chr3 10157436 10158828 -217365750 - L1PA14 LINE L1 0 6161 4744 1151 285 101 32 chr3 10158987 10159520 -217365058 - L2 LINE L2 -1547 1767 1198 562 273 12 6 chr3 10160815 10160980 -217363598 + MIR SINE MIR 87 252 -10 196 337 12 12 chr3 10161253 10161336 -217363242 - MIR3 SINE MIR -11 197 115 245 232 253 0 chr3 10161384 10161483 -217363095 - MER5A DNA MER1_type -22 167 44 524 289 80 30 chr3 10161852 10162053 -217362525 + MIR SINE MIR 7 217 -45 182 246 33 16 chr3 10162073 10162134 -217362444 - L2 LINE L2 -49 3223 3162 392 250 56 21 chr3 10162244 10162388 -217362190 + L3 LINE CR1 1192 1340 -237 1985 134 0 3 chr3 10163685 10163989 -217360589 + AluSx SINE Alu 1 303 0 233 222 37 25 chr3 10164002 10164083 -217360495 - L1ME3A LINE L1 -97 6073 5992 270 275 19 62 chr3 10164880 10165040 -217359538 - L1M4c LINE L1 -4966 1418 1266 371 267 20 14 chr3 10165562 10165708 -217358870 + (TA)n Simple_repeat Simple_repeat 1 147 0 376 316 86 48 chr3 10166590 10166799 -217357779 + L1M4 LINE L1 4563 4762 -1384 939 90 45 0 chr3 10166799 10166932 -217357646 + MER85 DNA T2_type 1 139 0 376 316 86 48 chr3 10166932 10167176 -217357402 + L1M4 LINE L1 4762 5033 -1113 265 303 97 36 chr3 10167670 10167835 -217356743 + MIR SINE MIR 87 261 -1 396 263 69 46 chr3 10167903 10168078 -217356500 + MIR SINE MIR 79 257 -5 375 206 63 16 chr3 10169914 10170040 -217354538 + MER53 DNA DNA 55 186 -3 290 77 0 0 chr3 10170584 10170623 -217353955 - MADE1 DNA Mariner -41 39 1 243 321 32 22 chr3 10171696 10171818 -217352760 - MIR SINE MIR -46 216 91 214 253 160 27 chr3 10171905 10171980 -217352598 - L2 LINE L2 -1 3271 3187 204 338 29 0 chr3 10172127 10172195 -217352383 - L2 LINE L2 -65 3207 3138 1146 219 302 16 chr3 10172385 10172829 -217351749 - MLT2F LTR ERVL -88 575 5 188 283 98 22 chr3 10173748 10173840 -217350738 + MIR SINE MIR 91 189 -73 261 270 230 0 chr3 10173886 10174038 -217350540 - L2 LINE L2 -154 3159 2973 279 320 48 10 chr3 10174336 10174439 -217350139 + MIR SINE MIR 150 256 -6 213 310 0 0 chr3 10174601 10174659 -217349919 - L2 LINE L2 -225 3047 2990 186 349 106 0 chr3 10175143 10175209 -217349369 - MIR SINE MIR -63 145 73 886 191 12 0 chr3 10175209 10175371 -217349207 + AluJo SINE Alu 119 282 -30 2015 196 76 5 chr3 10176109 10176543 -217348035 - MLT1C LTR MaLR 0 467 3 1923 166 27 14 chr3 10177326 10177694 -217346884 - MLT1B LTR MaLR 0 390 18 194 287 178 10 chr3 10177928 10178029 -217346549 - L2 LINE L2 -4 3309 3192 181 286 18 36 chr3 10178076 10178132 -217346446 + L2 LINE L2 3188 3242 -30 236 250 31 16 chr3 10178262 10178326 -217346252 + MIR3 SINE MIR 120 184 -24 246 333 12 12 chr3 10178336 10178420 -217346158 - L2 LINE L2 -198 3074 2991 1205 227 69 40 chr3 10178968 10179347 -217345231 - MLT1B LTR MaLR 0 390 1 191 374 0 30 chr3 10181205 10181304 -217343274 - L2 LINE L2 -49 3264 3169 874 211 0 63 chr3 10181304 10181527 -217343051 - MER20 DNA MER1_type -1 218 10 398 331 150 30 chr3 10181607 10182019 -217342559 - L2 LINE L2 -200 3113 2647 808 239 109 13 chr3 10182920 10183158 -217341420 - MIR SINE MIR 0 262 2 207 0 0 0 chr3 10184183 10184206 -217340372 + (A)n Simple_repeat Simple_repeat 1 23 0 2355 78 0 28 chr3 10184207 10184527 -217340051 + AluY SINE Alu 1 311 0 796 227 77 0 chr3 10184696 10184890 -217339688 + MER3 DNA MER1_type 1 209 0 1701 173 7 26 chr3 10185373 10185679 -217338899 - AluJo SINE Alu -12 300 1 219 340 60 50 chr3 10185877 10185977 -217338601 + L2 LINE L2 2988 3088 -184 700 267 0 12 chr3 10186836 10187008 -217337570 - FRAM SINE Alu -3 173 4 1077 209 51 13 chr3 10189435 10189743 -217334835 - L1ME2 LINE L1 -29 6135 5818 324 274 32 95 chr3 10191191 10191381 -217333197 - MER5B DNA MER1_type 0 178 1 268 338 0 0 chr3 10191882 10191959 -217332619 - MER5A DNA MER1_type -109 80 4 231 314 14 0 chr3 10192443 10192513 -217332065 + L2 LINE L2 3239 3309 -4 257 300 32 12 chr3 10192868 10192976 -217331602 + MIR SINE MIR 6 118 -90 296 300 18 0 chr3 10193140 10193250 -217331328 - Charlie8 DNA MER1_type -2253 164 53 214 203 14 14 chr3 10193707 10193781 -217330797 + (TA)n Simple_repeat Simple_repeat 2 75 0 224 217 22 0 chr3 10193815 10193861 -217330717 + (TG)n Simple_repeat Simple_repeat 2 48 0 300 322 0 0 chr3 10193861 10193951 -217330627 - L1MC4 LINE L1 -1339 6703 6614 2423 97 0 0 chr3 10194970 10195280 -217329298 + AluSg SINE Alu 1 310 0 2105 113 0 7 chr3 10195882 10196195 -217328383 - AluSg SINE Alu 0 311 1 195 333 228 21 chr3 10197100 10197565 -217327013 - L2 LINE L2 -349 2923 2372 24 67 0 0 chr3 10197943 10197988 -217326590 + AT_rich Low_complexity Low_complexity 1 45 0 2329 102 0 7 chr3 10198068 10198371 -217326207 + AluSx SINE Alu 1 301 -11 2402 47 0 60 chr3 10198773 10199091 -217325487 - AluY SINE Alu -12 299 1 350 330 18 41 chr3 10199911 10200132 -217324446 + MIR SINE MIR 19 234 -28 1085 153 0 0 chr3 10200416 10200586 -217323992 - AluSg/x SINE Alu -7 303 134 505 237 15 0 chr3 10201859 10201990 -217322588 + MER94 DNA DNA 2 134 0 308 264 104 35 chr3 10202141 10202285 -217322293 + MIR SINE MIR 28 181 -81 253 297 73 70 chr3 10202633 10202906 -217321672 + L2 LINE L2 2907 3180 -133 224 292 67 58 chr3 10203481 10203601 -217320977 - MIR SINE MIR -51 211 91 303 297 11 11 chr3 10204267 10204358 -217320220 + MIR SINE MIR 2 92 -170 227 170 57 0 chr3 10205163 10205216 -217319362 - MLT1D LTR MaLR -401 104 49 324 293 153 19 chr3 10205622 10205779 -217318799 + MIR SINE MIR 58 235 -27 2163 120 3 22 chr3 10205911 10206227 -217318351 + AluSx SINE Alu 1 310 -2 270 0 0 0 chr3 10206251 10206281 -217318297 + (CA)n Simple_repeat Simple_repeat 1 30 0 186 231 0 0 chr3 10209185 10209224 -217315354 + L2 LINE L2 3258 3296 -17 538 326 19 25 chr3 10209829 10210151 -217314427 + L1MC4 LINE L1 7271 7590 -452 * 2570 237 66 22 chr3 10210144 10211216 -217313362 + L1ME1 LINE L1 4428 5601 -565 2441 62 0 3 chr3 10211216 10211524 -217313054 + AluY SINE Alu 1 307 -4 2570 237 66 22 chr3 10211524 10212071 -217312507 + L1ME1 LINE L1 5601 6122 -44 424 203 122 14 chr3 10211967 10212115 -217312463 + L1MA10 LINE L1 6169 6332 -2 * 467 284 130 17 chr3 10212117 10212526 -217312052 + L1MC4 LINE L1 7588 8042 0 896 250 43 20 chr3 10212844 10213144 -217311434 - LTR16A LTR ERVL -49 401 95 185 324 28 39 chr3 10213503 10213619 -217310959 - MIR SINE MIR -119 89 7 1141 68 7 0 chr3 10214221 10214369 -217310209 - L1PA7 LINE L1 -7 6147 5999 28 29 0 0 chr3 10214657 10214692 -217309886 + AT_rich Low_complexity Low_complexity 1 35 0 2610 36 0 13 chr3 10214869 10215178 -217309400 - AluY SINE Alu -6 305 1 203 321 75 38 chr3 10215395 10215501 -217309077 + MIR3 SINE MIR 7 116 -92 197 162 0 27 chr3 10215695 10215732 -217308846 - L2 LINE L2 -95 3218 3183 374 300 29 43 chr3 10216112 10216252 -217308326 - L2 LINE L2 -556 2758 2621 27 62 0 0 chr3 10216439 10216487 -217308091 + AT_rich Low_complexity Low_complexity 1 48 0 1265 170 9 27 chr3 10216761 10216985 -217307593 + AluJo SINE Alu 75 294 -18 263 355 11 0 chr3 10218033 10218126 -217306452 - L2 LINE L2 -6 3266 3173 208 162 27 0 chr3 10218143 10218180 -217306398 + CT-rich Low_complexity Low_complexity 2 39 0 311 378 28 11 chr3 10218258 10218438 -217306140 - L2 LINE L2 -256 3057 2875 249 290 21 21 chr3 10218695 10218788 -217305790 - MIR SINE MIR -136 126 34 521 313 47 5 chr3 10218949 10219141 -217305437 - L2 LINE L2 -191 3081 2882 197 279 49 0 chr3 10221662 10221723 -217302855 - MIR SINE MIR -151 111 48 2319 55 41 10 chr3 10222314 10222607 -217301971 - AluY SINE Alu -9 302 1 443 284 40 27 chr3 10222783 10222931 -217301647 - MIR SINE MIR -3 259 110 2243 126 0 0 chr3 10223901 10224202 -217300376 - AluSq SINE Alu -10 303 3 906 137 167 18 chr3 10224209 10224436 -217300142 - L1MA8 LINE L1 0 6291 6031 465 292 19 19 chr3 10225527 10225681 -217298897 - MIR SINE MIR 0 262 109 425 84 0 84 chr3 10225721 10225792 -217298786 - AluY SINE Alu -45 266 202 1320 171 54 0 chr3 10226095 10226151 -217298427 + Tigger3(Golem) DNA MER2_type 2 54 -2975 207 0 0 0 chr3 10226160 10226183 -217298395 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 1597 135 96 4 chr3 10226183 10226433 -217298145 - AluSx SINE Alu -22 290 14 1320 171 54 0 chr3 10226433 10226675 -217297903 + Tigger3(Golem) DNA MER2_type 54 3029 0 2358 93 0 3 chr3 10226692 10227004 -217297574 + AluY SINE Alu 1 311 0 915 196 127 18 chr3 10227017 10227237 -217297341 - MIR SINE MIR -13 249 6 2444 131 120 0 chr3 10227471 10227945 -217296633 + L1PA16 LINE L1 5635 6165 -1 27 0 0 0 chr3 10227989 10228016 -217296562 + AT_rich Low_complexity Low_complexity 1 27 0 305 353 75 8 chr3 10231434 10231567 -217293011 + MIR SINE MIR 29 170 -92 2542 67 3 3 chr3 10231766 10232079 -217292499 + AluSp SINE Alu 1 313 0 297 0 0 0 chr3 10232252 10232285 -217292293 + (CA)n Simple_repeat Simple_repeat 2 34 0 498 350 51 5 chr3 10232553 10232767 -217291811 - MIR SINE MIR -38 224 1 722 192 13 98 chr3 10233322 10233546 -217291032 + MER3 DNA MER1_type 5 209 0 205 191 0 0 chr3 10240097 10240139 -217284439 + (TAA)n Simple_repeat Simple_repeat 1 42 0 211 326 141 0 chr3 10241142 10241234 -217283344 + MIR SINE MIR 45 149 -113 2199 123 0 0 chr3 10241361 10241671 -217282907 - AluSg SINE Alu 0 310 1 306 302 63 0 chr3 10242351 10242474 -217282104 - MIR SINE MIR -68 140 39 186 133 0 0 chr3 10242678 10242708 -217281870 + (T)n Simple_repeat Simple_repeat 1 30 0 392 240 232 0 chr3 10243894 10244019 -217280559 + MIR SINE MIR 107 260 -2 204 243 27 95 chr3 10244601 10244675 -217279903 - MER5A DNA MER1_type -103 86 18 783 275 25 21 chr3 10245311 10245551 -217279027 + MIR SINE MIR 16 256 -6 793 220 59 0 chr3 10245593 10245779 -217278799 - MER3 DNA MER1_type -12 197 1 279 240 175 39 chr3 10247037 10247171 -217277407 - MIR SINE MIR -62 146 36 881 276 35 0 chr3 10248029 10248261 -217276317 - MIR SINE MIR -16 246 7 486 220 9 0 chr3 10248327 10248436 -217276142 - MER20 DNA MER1_type 0 219 110 2338 86 3 10 chr3 10251011 10251314 -217273264 - AluY SINE Alu -10 301 1 183 370 74 0 chr3 10251556 10251637 -217272941 + L2 LINE L2 3151 3237 -35 330 276 234 0 chr3 10251930 10252075 -217272503 - MER5A DNA MER1_type 0 189 11 440 244 40 45 chr3 10252695 10252871 -217271707 - MER5B DNA MER1_type -3 175 1 863 230 6 0 chr3 10252894 10253059 -217271519 + MER5A DNA MER1_type 6 171 -18 277 313 0 12 chr3 10253295 10253378 -217271200 - L3 LINE CR1 -92 1485 1404 375 327 46 0 chr3 10253378 10253531 -217271047 - MIR SINE MIR -24 238 79 417 307 153 70 chr3 10255337 10255780 -217268798 - L2 LINE L2 -338 2976 2497 975 264 105 24 chr3 10256171 10256553 -217268025 - MER77 LTR ERV1 -15 590 178 216 0 0 0 chr3 10257643 10257667 -217266911 + (T)n Simple_repeat Simple_repeat 1 24 0 292 279 27 27 chr3 10258125 10258236 -217266342 - L2 LINE L2 -184 3088 2978 211 200 43 0 chr3 10258554 10258624 -217265954 + (TA)n Simple_repeat Simple_repeat 1 73 0 22 80 0 0 chr3 10258942 10258992 -217265586 + AT_rich Low_complexity Low_complexity 1 50 0 198 286 69 57 chr3 10260559 10260734 -217263844 + L2 LINE L2 2937 3113 -159 617 251 108 71 chr3 10260880 10261285 -217263293 - L2 LINE L2 -185 3128 2712 246 281 108 19 chr3 10261858 10261974 -217262604 + MIR SINE MIR 51 172 -67 185 154 26 0 chr3 10262119 10262158 -217262420 + CT-rich Low_complexity Low_complexity 2 41 0 344 207 0 0 chr3 10262352 10262434 -217262144 - L1MB1 LINE L1 -4 6185 6104 1103 221 58 68 chr3 10262488 10262837 -217261741 - MLT1C LTR MaLR -75 392 46 2222 109 10 19 chr3 10262837 10263150 -217261428 - AluSx SINE Alu -2 310 1 1103 221 58 68 chr3 10263150 10263194 -217261384 - MLT1C LTR MaLR -421 46 3 381 265 105 25 chr3 10263217 10263379 -217261199 + MIR SINE MIR 12 186 -76 276 30 0 0 chr3 10263504 10263537 -217261041 + (T)n Simple_repeat Simple_repeat 1 33 0 414 266 219 0 chr3 10264199 10264327 -217260251 + MER5A DNA MER1_type 27 182 -7 1569 177 23 43 chr3 10264890 10265190 -217259388 + AluJo SINE Alu 1 294 -18 505 279 110 50 chr3 10265239 10265458 -217259120 - MIR SINE MIR -2 260 29 546 253 188 10 chr3 10267755 10267957 -217256621 + MIR SINE MIR 25 262 0 1989 82 0 0 chr3 10269243 10269488 -217255090 + AluY SINE Alu 1 245 -66 423 0 0 0 chr3 10269492 10269539 -217255039 + (CA)n Simple_repeat Simple_repeat 2 48 0 214 313 0 24 chr3 10269648 10269731 -217254847 + (ATG)n Simple_repeat Simple_repeat 3 83 0 314 337 112 5 chr3 10269746 10269951 -217254627 - MIR SINE MIR -34 228 2 238 191 43 0 chr3 10270481 10270528 -217254050 + L2 LINE L2 3224 3272 0 618 273 12 12 chr3 10270624 10270785 -217253793 + MIR SINE MIR 92 252 -10 609 250 20 46 chr3 10271954 10272150 -217252428 - MIR SINE MIR -4 258 69 2052 126 17 0 chr3 10272161 10272454 -217252124 - AluSx SINE Alu -14 298 1 342 67 0 0 chr3 10272520 10272565 -217252013 - Alu SINE Alu -20 282 238 294 266 184 5 chr3 10272712 10272919 -217251659 - L1MC4 LINE L1 -18 8024 7781 1548 174 11 14 chr3 10273291 10273567 -217251011 + AluJo SINE Alu 13 287 -25 1244 158 4 79 chr3 10274468 10274733 -217249845 - AluJo SINE Alu -8 304 60 368 320 56 32 chr3 10274775 10275025 -217249553 - L2 LINE L2 -104 3209 2954 468 0 0 0 chr3 10276326 10276378 -217248200 + (TA)n Simple_repeat Simple_repeat 1 52 0 531 259 99 28 chr3 10276402 10276726 -217247852 - L1MC4 LINE L1 -163 7879 7533 313 276 69 83 chr3 10276824 10277041 -217247537 - L1ME4a LINE L1 -246 5875 5662 220 330 140 10 chr3 10277404 10277504 -217247074 + L2 LINE L2 3150 3262 -10 1267 252 119 50 chr3 10277907 10278531 -217246047 - PABL_B LTR ERV1 0 667 1 2187 253 88 10 chr3 10278807 10279413 -217245165 - MER82 DNA MER2_type 0 653 1 2337 91 0 0 chr3 10279420 10279582 -217244996 - AluSc SINE Alu -13 296 132 2274 119 0 0 chr3 10279582 10279885 -217244693 - AluSg SINE Alu -7 303 1 2337 91 0 0 chr3 10279885 10280018 -217244560 - AluSc SINE Alu -176 133 1 228 35 0 0 chr3 10280018 10280047 -217244531 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 514 291 0 8 chr3 10280054 10280181 -217244397 + L2 LINE L2 3180 3305 -8 228 258 30 98 chr3 10280184 10280316 -217244262 + L2 LINE L2 3149 3271 -1 2733 173 61 34 chr3 10281123 10281764 -217242814 + LTR8A LTR ERV1 1 658 -69 1006 50 0 0 chr3 10281764 10281884 -217242694 - AluY SINE Alu -18 293 174 329 175 0 0 chr3 10281885 10281942 -217242636 + LTR8A LTR ERV1 652 708 -19 2634 102 56 0 chr3 10282469 10282882 -217241696 - MER41A LTR ERV1 -18 536 101 1647 154 145 10 chr3 10282904 10283301 -217241277 - MER61C LTR ERV1 0 434 1 726 96 0 0 chr3 10283301 10283405 -217241173 - MER41B LTR ERV1 -531 104 1 314 325 0 0 chr3 10285232 10285309 -217239269 + L2 LINE L2 3237 3313 0 543 258 94 21 chr3 10285571 10285941 -217238637 - L1ME4a LINE L1 -473 5648 5293 2356 98 0 3 chr3 10287556 10287861 -217236717 - AluSq SINE Alu -9 304 1 231 211 35 0 chr3 10287910 10287967 -217236611 - MIR SINE MIR -114 94 36 239 217 17 17 chr3 10288052 10288112 -217236466 + MIR SINE MIR 111 170 -92 256 278 124 10 chr3 10289309 10289406 -217235172 + L2 LINE L2 3206 3313 0 22 35 0 0 chr3 10290613 10290642 -217233936 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 10290958 10290979 -217233599 + AT_rich Low_complexity Low_complexity 1 21 0 508 286 59 20 chr3 10292139 10292342 -217232236 + MIR SINE MIR 51 261 -1 779 313 94 23 chr3 10292932 10293316 -217231262 + L2 LINE L2 2863 3273 -40 1808 240 93 39 chr3 10293318 10294006 -217230572 - MER50 LTR ERV1 0 734 10 238 333 70 26 chr3 10294389 10294545 -217230033 + MIR3 SINE MIR 16 178 -30 * 437 343 152 49 chr3 10294521 10295416 -217229162 - L3 LINE CR1 -400 1177 191 352 295 195 0 chr3 10295867 10296014 -217228564 - MER5A DNA MER1_type -1 188 13 646 281 30 0 chr3 10296014 10296181 -217228397 - MER5B DNA MER1_type -3 175 4 810 207 39 22 chr3 10296193 10296372 -217228206 - MER5A DNA MER1_type -1 188 7 381 279 25 16 chr3 10296991 10297113 -217227465 - L2 LINE L2 -4 3309 3187 485 273 107 34 chr3 10297786 10297991 -217226587 - MIR SINE MIR -31 231 12 2049 145 35 30 chr3 10298431 10298804 -217225774 + THE1C LTR MaLR 1 375 0 305 197 14 0 chr3 10298899 10298970 -217225608 + (TG)n Simple_repeat Simple_repeat 2 73 0 1041 224 121 35 chr3 10298975 10299315 -217225263 + MLT1A2 LTR MaLR 4 372 -2 849 295 78 12 chr3 10299401 10299610 -217224968 + L1ME LINE L1 5280 5474 -688 1688 175 20 20 chr3 10299610 10299907 -217224671 + AluSx SINE Alu 1 297 -15 849 295 78 12 chr3 10299907 10300196 -217224382 + L1ME LINE L1 5474 5811 -351 308 310 17 43 chr3 10300707 10300861 -217223717 - MIR SINE MIR -48 160 7 4197 120 23 2 chr3 10301170 10301813 -217222765 + L1PA13 LINE L1 5504 6160 -3 346 288 27 9 chr3 10301938 10302049 -217222529 - MER81 DNA DNA -1 113 1 325 149 15 0 chr3 10302083 10302150 -217222428 + MADE1 DNA Mariner 1 68 -12 249 108 0 0 chr3 10302200 10302237 -217222341 + MADE1 DNA Mariner 44 80 0 1845 192 6 6 chr3 10303069 10303423 -217221155 + MLT1A1 LTR MaLR 12 365 0 550 212 73 15 chr3 10303423 10303560 -217221018 - MER5A DNA MER1_type -39 150 6 411 298 87 36 chr3 10304212 10304464 -217220114 - MLT1J LTR MaLR 0 511 247 338 290 42 23 chr3 10305933 10306195 -217218383 + L1MEc LINE L1 2128 2394 -4002 704 190 40 17 chr3 10306196 10306370 -217218208 + MLT1D LTR MaLR 1 178 -327 341 143 0 0 chr3 10306371 10306427 -217218151 - THE1B LTR MaLR -1 363 308 1575 169 115 36 chr3 10306468 10306887 -217217691 + LTR10A LTR ERV1 97 548 -61 1511 138 44 60 chr3 10306899 10307217 -217217361 - THE1B LTR MaLR -51 313 1 855 232 107 12 chr3 10307234 10307553 -217217025 + MLT1D LTR MaLR 157 505 0 230 179 18 0 chr3 10307553 10307609 -217216969 + L1MEc LINE L1 2351 2407 -3808 182 219 24 0 chr3 10308977 10309018 -217215560 + L2 LINE L2 3270 3311 -2 186 229 33 49 chr3 10309102 10309163 -217215415 - MIR3 SINE MIR -1 207 148 466 341 11 37 chr3 10310202 10310475 -217214103 - L3 LINE CR1 -653 924 659 198 206 0 0 chr3 10310684 10310718 -217213860 + L2 LINE L2 3204 3237 -35 6747 102 30 34 chr3 10310869 10311945 -217212633 + MER11C LTR ERVK 1 1071 0 191 309 155 0 chr3 10312743 10312827 -217211751 - MIR SINE MIR -3 259 163 1350 255 60 11 chr3 10312855 10313290 -217211288 + MLT1C LTR MaLR 12 467 0 240 314 22 100 chr3 10313301 10313530 -217211048 + MIR SINE MIR 40 250 -12 229 280 168 19 chr3 10313559 10313666 -217210912 - MIR SINE MIR -108 154 32 187 293 40 27 chr3 10314488 10314563 -217210015 - MIR SINE MIR -111 97 22 207 0 0 0 chr3 10315136 10315159 -217209419 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 209 309 57 24 chr3 10315756 10315879 -217208699 + MIR SINE MIR 20 146 -116 1888 274 20 36 chr3 10316480 10317116 -217207462 + MLT1E2 LTR MaLR 1 626 0 2616 100 17 3 chr3 10317119 10317478 -217207100 + THE1B LTR MaLR 1 364 0 2431 110 0 0 chr3 10318049 10318358 -217206220 - AluSc SINE Alu 0 309 1 666 356 95 11 chr3 10318358 10318821 -217205757 + L2 LINE L2 1982 2483 -831 241 242 16 16 chr3 10319248 10319310 -217205268 + L3 LINE CR1 1515 1576 -1 766 297 90 30 chr3 10319821 10320222 -217204356 - LTR16C LTR ERVL 0 491 67 1914 174 35 30 chr3 10320234 10320782 -217203796 - MLT2A2 LTR ERVL 0 554 1 190 333 144 0 chr3 10322361 10322472 -217202106 - L2 LINE L2 -4 3268 3142 295 276 66 33 chr3 10322514 10322666 -217201912 - MIR SINE MIR -4 258 102 254 343 80 34 chr3 10322757 10322932 -217201646 - L2 LINE L2 -210 3062 2880 417 261 20 7 chr3 10323676 10323873 -217200705 - MLT1H1 LTR MaLR -13 542 300 354 252 0 34 chr3 10323913 10324032 -217200546 - L1MA9 LINE L1 -38 6274 6160 287 254 55 27 chr3 10324047 10324157 -217200421 + L1MA9 LINE L1 5933 6045 -267 388 261 92 7 chr3 10324257 10324399 -217200179 - MLT1H1 LTR MaLR -364 191 38 293 294 0 0 chr3 10324624 10324692 -217199886 - MER58 DNA MER1_type -2350 70 3 585 276 84 28 chr3 10325561 10325775 -217198803 + MIR SINE MIR 36 261 -1 481 272 126 50 chr3 10325907 10326146 -217198432 - MIR SINE MIR 0 262 6 260 67 0 67 chr3 10326589 10326649 -217197929 + (TA)n Simple_repeat Simple_repeat 1 56 0 1039 157 0 0 chr3 10326653 10326806 -217197772 - FRAM SINE Alu -24 152 1 417 303 0 0 chr3 10326958 10327057 -217197521 - L2 LINE L2 0 3272 3174 2359 84 10 0 chr3 10327188 10327485 -217197093 + AluSx SINE Alu 1 300 -12 468 311 39 22 chr3 10327695 10327875 -217196703 - MER5A DNA MER1_type -6 183 1 2358 95 0 3 chr3 10328161 10328457 -217196121 - AluSg SINE Alu -15 295 1 846 116 0 0 chr3 10328502 10328631 -217195947 + (TA)n Simple_repeat Simple_repeat 1 129 0 243 294 158 20 chr3 10329135 10329281 -217195297 + MIR SINE MIR 26 191 -71 2132 193 31 5 chr3 10329444 10329859 -217194719 + MSTB LTR MaLR 1 426 0 678 249 21 21 chr3 10330464 10330653 -217193925 + MER5A DNA MER1_type 1 189 0 243 240 19 67 chr3 10331018 10331122 -217193456 + LTR67 LTR ERVL 442 540 -17 3266 149 22 77 chr3 10331473 10332202 -217192376 - LTR8 LTR ERV1 -2 689 1 4925 50 6 0 chr3 10332514 10333177 -217191401 - L1PA4 LINE L1 -2238 3908 3242 12088 35 1 1 chr3 10333177 10335413 -217189165 + L1PA4 LINE L1 3916 6154 -1 1455 117 40 18 chr3 10335569 10335792 -217188786 - MER30 DNA MER1_type -1 229 2 885 271 23 0 chr3 10335925 10336143 -217188435 - MER58A DNA MER1_type -1 223 1 326 286 121 16 chr3 10337313 10337495 -217187083 + L2 LINE L2 2565 2765 -549 299 331 54 15 chr3 10337499 10337629 -217186949 + MER5B DNA MER1_type 1 135 -43 463 241 25 25 chr3 10337629 10337787 -217186791 - L1MD2 LINE L1 -173 6186 6029 191 361 0 14 chr3 10337839 10337911 -217186667 + MER5A DNA MER1_type 118 188 -1 289 208 57 0 chr3 10338085 10338138 -217186440 + L2 LINE L2 3202 3257 -15 192 97 0 0 chr3 10338174 10338205 -217186373 + (CA)n Simple_repeat Simple_repeat 2 32 0 185 371 29 9 chr3 10338247 10338352 -217186226 - MIR SINE MIR -154 108 2 790 222 5 31 chr3 10339109 10339303 -217185275 - MER5A DNA MER1_type 0 189 1 404 287 19 0 chr3 10339562 10339670 -217184908 + MER5B DNA MER1_type 3 112 -66 191 225 0 0 chr3 10339697 10339737 -217184841 + MIR SINE MIR 159 198 -64 286 253 40 0 chr3 10339756 10339831 -217184747 - MIR SINE MIR -8 254 177 2570 145 61 10 chr3 10339987 10340564 -217184014 - LTR12 LTR ERV1 -226 2212 55 343 219 73 21 chr3 10340574 10340670 -217183908 + MIR SINE MIR 88 188 -74 839 293 11 15 chr3 10340699 10340965 -217183613 + L1MCb LINE L1 1 265 -5780 397 212 126 27 chr3 10340969 10341008 -217183570 - L1 LINE L1 -2486 3660 3626 2169 118 0 17 chr3 10341008 10341305 -217183273 + AluSx SINE Alu 1 292 -20 397 212 126 27 chr3 10341305 10341430 -217183148 - L1 LINE L1 -2520 3626 3495 492 312 95 9 chr3 10341475 10341706 -217182872 + L1MCb LINE L1 312 562 -5483 1279 246 82 29 chr3 10341780 10342292 -217182286 + L1MCb LINE L1 554 1092 -4953 1119 195 36 115 chr3 10342299 10342689 -217181889 + MLT1A1 LTR MaLR 7 365 0 304 216 23 0 chr3 10342689 10342777 -217181801 + L1MCb LINE L1 1090 1179 -5385 1217 142 176 31 chr3 10342777 10343038 -217181540 + AluSg SINE Alu 2 300 0 1557 190 70 24 chr3 10343302 10343675 -217180903 + MLT1B LTR MaLR 1 390 0 1820 150 13 29 chr3 10344010 10344316 -217180262 + AluSx SINE Alu 6 306 -6 2472 257 51 7 chr3 10344374 10345595 -217178983 - L1M4 LINE L1 -1537 4609 3280 2855 174 19 4 chr3 10345930 10346465 -217178113 + MER74A LTR ERVL 16 558 0 647 202 0 0 chr3 10346667 10346776 -217177802 + FLAM_A SINE Alu 15 123 -19 366 23 0 0 chr3 10346992 10347035 -217177543 + (TG)n Simple_repeat Simple_repeat 2 44 0 248 289 116 26 chr3 10347779 10347969 -217176609 + L1MC/D LINE L1 5569 5775 -2033 1453 118 32 0 chr3 10347996 10348216 -217176362 + MER30 DNA MER1_type 2 228 -2 218 82 0 61 chr3 10349626 10349675 -217174903 + (CAAAA)n Simple_repeat Simple_repeat 4 49 0 231 314 42 25 chr3 10349840 10349958 -217174620 - L2 LINE L2 -1 3312 3193 193 281 104 30 chr3 10350791 10350926 -217173652 - MIR SINE MIR -43 219 75 795 266 78 33 chr3 10351232 10351723 -217172855 + L2 LINE L2 2794 3313 0 284 163 0 0 chr3 10351899 10351948 -217172630 + MER39 LTR ERV1 1 49 -658 2388 186 48 18 chr3 10352034 10352605 -217171973 + MER39 LTR ERV1 69 707 0 378 315 0 0 chr3 10352894 10353002 -217171576 - MIR SINE MIR -41 221 114 1479 192 20 30 chr3 10353297 10353703 -217170875 + LTR37A LTR ERV1 23 424 -2 313 0 21310 0 chr3 10354534 10354647 -217169931 + L1MC4a LINE L1 7425 5125 -2683 412 291 17 62 chr3 10354647 10354698 -217169880 - MER5B DNA MER1_type -4 174 122 1871 107 4 4 chr3 10354698 10355047 -217169531 + AluSx SINE Alu 30 378 0 412 291 17 62 chr3 10355047 10355171 -217169407 - MER5B DNA MER1_type -56 122 4 313 0 21310 0 chr3 10355171 10355185 -217169393 + L1MC4a LINE L1 5125 4858 -2950 978 169 38 6 chr3 10355185 10355368 -217169210 - MER5A DNA MER1_type 0 189 1 313 0 21310 0 chr3 10355368 10355589 -217168989 + L1MC4a LINE L1 4857 7699 -109 180 260 104 52 chr3 10356290 10356367 -217168211 + L2 LINE L2 2624 2704 -610 856 221 44 58 chr3 10356368 10356594 -217167984 + MER58A DNA MER1_type 1 223 -1 433 264 0 0 chr3 10356615 10356706 -217167872 + MER5A DNA MER1_type 12 102 -87 1612 183 131 3 chr3 10357192 10357575 -217167003 + MSTB1 LTR MaLR 1 432 0 1071 198 102 23 chr3 10357959 10358303 -217166275 - LTR37A LTR ERV1 0 426 56 627 228 21 32 chr3 10359532 10359771 -217164807 - MER39 LTR ERV1 -3 680 422 443 311 24 67 chr3 10359897 10360106 -217164472 - MIR SINE MIR -14 248 49 196 306 32 0 chr3 10360849 10360911 -217163667 - L2 LINE L2 0 3272 3209 265 286 0 14 chr3 10360914 10360984 -217163594 - L2 LINE L2 -4 3309 3241 591 260 86 83 chr3 10361099 10361696 -217162882 + MER77 LTR ERV1 87 601 -4 356 275 118 22 chr3 10361725 10361954 -217162624 - L2 LINE L2 -68 3245 2995 587 236 188 0 chr3 10362293 10362437 -217162141 - MER5A DNA MER1_type 0 189 19 815 215 83 31 chr3 10362497 10362785 -217161793 - MER33 DNA MER1_type -21 303 1 182 208 21 0 chr3 10362976 10363024 -217161554 + (TA)n Simple_repeat Simple_repeat 1 49 0 450 0 0 0 chr3 10363028 10363078 -217161500 + (CA)n Simple_repeat Simple_repeat 2 51 0 21 36 0 0 chr3 10363598 10363626 -217160952 + AT_rich Low_complexity Low_complexity 1 28 0 412 280 136 19 chr3 10363957 10364171 -217160407 - MIR SINE MIR -15 247 9 294 378 82 30 chr3 10364180 10364447 -217160131 - L3 LINE CR1 -163 1414 1134 1640 257 61 18 chr3 10364762 10365253 -217159325 + MLT1H LTR MaLR 15 526 -23 595 274 30 25 chr3 10366197 10366394 -217158184 + MIR SINE MIR 4 201 -61 246 250 159 11 chr3 10366657 10366745 -217157833 + MIR SINE MIR 39 139 -69 267 105 26 0 chr3 10366967 10367005 -217157573 + L2 LINE L2 3215 3253 -19 397 325 86 0 chr3 10367343 10367506 -217157072 - MIR SINE MIR -62 200 24 339 335 112 6 chr3 10367997 10368167 -217156411 - MIR SINE MIR -12 250 63 1224 121 185 0 chr3 10368169 10368418 -217156160 + L1MA5A LINE L1 5993 6287 -10 270 206 79 0 chr3 10368577 10368640 -217155938 + MER103 DNA DNA 18 85 -81 317 317 65 4 chr3 10369137 10369367 -217155211 + L1ME3A LINE L1 5628 5871 -299 23 54 0 0 chr3 10369496 10369533 -217155045 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr3 10369715 10369739 -217154839 + AT_rich Low_complexity Low_complexity 1 24 0 1481 174 81 3 chr3 10369915 10370225 -217154353 - MLT1A1 LTR MaLR 0 365 32 24 32 0 0 chr3 10370302 10370333 -217154245 + AT_rich Low_complexity Low_complexity 1 31 0 24 53 0 0 chr3 10371479 10371517 -217153061 + AT_rich Low_complexity Low_complexity 1 38 0 266 221 13 0 chr3 10371668 10371745 -217152833 + L1MDb LINE L1 1271 1348 -5195 365 298 14 106 chr3 10371950 10372242 -217152336 + L1MDb LINE L1 1656 1920 -4620 10314 205 89 25 chr3 10372249 10375338 -217149240 + L1MA4A LINE L1 8 2899 -4046 1741 178 0 24 chr3 10375338 10375667 -217148911 - AluJb SINE Alu 0 322 1 10314 205 89 25 chr3 10375667 10375690 -217148888 + L1MA4A LINE L1 2899 2919 -4026 1771 144 0 50 chr3 10375690 10375989 -217148589 - AluSg SINE Alu -26 284 1 10314 205 89 25 chr3 10375989 10379413 -217145165 + L1MA4A LINE L1 2919 6945 0 800 219 0 12 chr3 10379777 10379937 -217144641 - FRAM SINE Alu -18 158 1 1980 247 93 53 chr3 10380352 10381389 -217143189 + L1MC4 LINE L1 6965 8042 0 1213 269 143 22 chr3 10381670 10382972 -217141606 + L1ME3A LINE L1 4465 5936 -234 2039 120 3 20 chr3 10383191 10383491 -217141087 + AluSx SINE Alu 1 295 -17 363 272 9 26 chr3 10383562 10383797 -217140781 - MLT1I LTR MaLR -6 403 101 277 296 0 96 chr3 10383964 10384079 -217140499 + L2 LINE L2 2919 3022 -250 548 306 35 39 chr3 10385455 10385502 -217139076 - MIR SINE MIR -1 261 215 2215 172 16 21 chr3 10385502 10385932 -217138646 + MSTA LTR MaLR 1 428 0 548 306 35 39 chr3 10385932 10386142 -217138436 - MIR SINE MIR -47 215 5 188 266 127 13 chr3 10386829 10386908 -217137670 - MIR SINE MIR -29 233 146 197 404 0 0 chr3 10386925 10387034 -217137544 - L3 LINE CR1 -731 846 738 343 308 151 6 chr3 10387999 10388171 -217136407 - MIR SINE MIR -10 252 56 188 262 0 0 chr3 10388198 10388240 -217136338 + MER5B DNA MER1_type 12 53 -125 29 28 0 0 chr3 10388374 10388410 -217136168 + AT_rich Low_complexity Low_complexity 1 36 0 396 310 99 34 chr3 10388626 10388764 -217135814 + L1M4 LINE L1 3352 3480 -2666 180 0 0 0 chr3 10388764 10388784 -217135794 + (CA)n Simple_repeat Simple_repeat 2 21 0 396 310 99 34 chr3 10388784 10389037 -217135541 + L1M4 LINE L1 3480 3715 -2431 2170 105 14 3 chr3 10389037 10389332 -217135246 + AluSg SINE Alu 1 298 -12 396 310 99 34 chr3 10389332 10389506 -217135072 + L1M4 LINE L1 3715 3955 -2191 258 156 94 0 chr3 10389700 10389764 -217134814 + FRAM SINE Alu 37 106 -60 614 203 86 49 chr3 10389870 10390079 -217134499 + MLT1C LTR MaLR 8 234 -233 819 136 0 0 chr3 10390129 10390239 -217134339 - FLAM_C SINE Alu -25 118 9 353 283 133 33 chr3 10390489 10390910 -217133668 + L1M4 LINE L1 4382 4844 -1302 271 115 0 19 chr3 10390916 10390968 -217133610 + MER5C DNA MER1_type 74 124 -200 230 200 0 86 chr3 10390992 10391062 -217133516 + MER5C DNA MER1_type 240 303 -21 337 273 35 87 chr3 10391455 10391627 -217132951 - MIR3 SINE MIR -6 202 40 2190 101 7 3 chr3 10392096 10392393 -217132185 - AluSx SINE Alu -14 298 1 289 316 23 18 chr3 10392425 10392596 -217131982 - L1ME4a LINE L1 -220 5901 5730 2186 125 0 13 chr3 10392848 10393159 -217131419 + AluSx SINE Alu 1 307 -5 244 308 64 39 chr3 10393618 10393774 -217130804 + MER5A DNA MER1_type 27 186 -3 447 258 174 13 chr3 10393845 10394000 -217130578 - MER5A DNA MER1_type -1 188 9 305 344 51 62 chr3 10394115 10394310 -217130268 + MIR3 SINE MIR 16 208 0 966 261 111 2 chr3 10395036 10395442 -217129136 + MER113 DNA MER1_type? 9 458 -63 2203 138 0 0 chr3 10395808 10396120 -217128458 + AluSx SINE Alu 1 312 0 361 354 46 11 chr3 10397077 10397252 -217127326 + MIR SINE MIR 21 201 -61 264 277 71 0 chr3 10397972 10398113 -217126465 - L1ME4a LINE L1 -4 6117 5967 23 0 0 0 chr3 10398159 10398182 -217126396 + AT_rich Low_complexity Low_complexity 1 23 0 443 311 60 48 chr3 10399270 10399521 -217125057 + MIR SINE MIR 8 261 -1 192 162 88 88 chr3 10399515 10399583 -217124995 - MIR SINE MIR -111 151 84 * 359 299 68 7 chr3 10399819 10399966 -217124612 - L3 LINE CR1 -794 783 628 22 56 0 0 chr3 10400867 10400903 -217123675 + AT_rich Low_complexity Low_complexity 1 36 0 1216 57 13 0 chr3 10400982 10401140 -217123438 - L1PA4 LINE L1 -1 6154 5995 34 53 0 0 chr3 10401152 10401190 -217123388 + GC_rich Low_complexity Low_complexity 1 38 0 369 300 29 43 chr3 10401739 10401879 -217122699 + L2 LINE L2 2621 2758 -556 194 162 0 27 chr3 10402259 10402296 -217122282 + L2 LINE L2 3183 3218 -95 198 321 75 38 chr3 10402490 10402596 -217121982 - MIR3 SINE MIR -92 116 7 2396 58 3 16 chr3 10402813 10403123 -217121455 + AluY SINE Alu 1 306 -5 243 312 26 26 chr3 10403163 10403240 -217121338 + MER5A DNA MER1_type 4 80 -109 332 274 32 95 chr3 10403741 10403931 -217120647 + MER5B DNA MER1_type 1 178 0 1029 242 43 10 chr3 10405379 10405687 -217118891 + L1ME2 LINE L1 5818 6134 -30 189 374 0 30 chr3 10407439 10407538 -217117040 - L2 LINE L2 -49 3264 3169 945 206 0 63 chr3 10407538 10407761 -217116817 - MER20 DNA MER1_type -1 218 10 387 331 150 30 chr3 10407842 10408254 -217116324 - L2 LINE L2 -200 3113 2647 807 239 109 13 chr3 10409155 10409393 -217115185 - MIR SINE MIR 0 262 2 207 0 0 0 chr3 10410418 10410441 -217114137 + (A)n Simple_repeat Simple_repeat 1 23 0 2282 91 0 28 chr3 10410442 10410762 -217113816 + AluY SINE Alu 1 311 0 255 265 41 20 chr3 10411666 10411764 -217112814 + L1MC4 LINE L1 7926 8025 -17 380 253 133 19 chr3 10411900 10412058 -217112520 - MIR SINE MIR 0 262 87 626 263 21 16 chr3 10412116 10412310 -217112268 - L1ME3A LINE L1 -34 6136 5942 700 237 25 30 chr3 10412994 10413230 -217111348 + MER106A DNA MER1_type 1 235 -1 199 361 84 40 chr3 10415454 10415703 -217108875 + L2 LINE L2 2645 2904 -410 215 283 17 0 chr3 10415789 10415849 -217108729 - MIR SINE MIR 0 262 202 886 246 60 30 chr3 10416014 10416348 -217108230 - L1ME1 LINE L1 -5 6161 5818 2064 125 0 3 chr3 10416352 10416639 -217107939 - AluSc SINE Alu -23 286 1 228 35 0 0 chr3 10416639 10416668 -217107910 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 511 291 0 8 chr3 10416675 10416802 -217107776 + L2 LINE L2 3180 3305 -8 228 258 30 98 chr3 10416805 10416937 -217107641 + L2 LINE L2 3149 3271 -1 2920 176 59 34 chr3 10417744 10418386 -217106192 + LTR8A LTR ERV1 1 658 -69 2185 56 42 11 chr3 10418386 10418670 -217105908 - AluYa5 SINE Alu -18 293 1 443 284 40 27 chr3 10418846 10418994 -217105584 - MIR SINE MIR -3 259 110 2222 126 0 0 chr3 10419964 10420265 -217104313 - AluSq SINE Alu -10 303 3 972 137 167 18 chr3 10420272 10420499 -217104079 - L1MA8 LINE L1 0 6291 6031 215 222 146 94 chr3 10421527 10421698 -217102880 + MIR SINE MIR 73 252 -10 480 304 19 19 chr3 10422811 10422972 -217101606 + MER5B DNA MER1_type 1 161 -17 1351 202 79 20 chr3 10423111 10423467 -217101111 - MLT1B LTR MaLR -11 379 3 392 240 232 0 chr3 10424611 10424736 -217099842 + MIR SINE MIR 107 260 -2 204 243 27 95 chr3 10425318 10425392 -217099186 - MER5A DNA MER1_type -103 86 18 783 275 25 21 chr3 10426028 10426268 -217098310 + MIR SINE MIR 16 256 -6 793 220 59 0 chr3 10426310 10426496 -217098082 - MER3 DNA MER1_type -12 197 1 279 240 175 39 chr3 10427754 10427888 -217096690 - MIR SINE MIR -62 146 36 881 276 35 0 chr3 10428746 10428978 -217095600 - MIR SINE MIR -16 246 7 486 220 9 0 chr3 10429044 10429153 -217095425 - MER20 DNA MER1_type 0 219 110 219 340 60 50 chr3 10429796 10429896 -217094682 - L2 LINE L2 -184 3088 2988 1687 176 7 26 chr3 10430094 10430400 -217094178 + AluJo SINE Alu 1 300 -12 796 227 77 0 chr3 10430883 10431077 -217093501 - MER3 DNA MER1_type 0 209 1 2485 48 0 58 chr3 10431246 10431576 -217093002 - AluY SINE Alu 0 311 1 361 335 18 41 chr3 10432396 10432617 -217091961 + MIR SINE MIR 19 234 -28 1085 153 0 0 chr3 10432900 10433070 -217091508 - AluSg/x SINE Alu -7 305 136 505 237 15 0 chr3 10434343 10434474 -217090104 + MER94 DNA DNA 2 134 0 295 273 105 35 chr3 10434626 10434769 -217089809 + MIR SINE MIR 29 181 -81 253 297 73 70 chr3 10435117 10435390 -217089188 + L2 LINE L2 2907 3180 -133 224 292 67 58 chr3 10435965 10436085 -217088493 - MIR SINE MIR -51 211 91 303 297 11 11 chr3 10436751 10436842 -217087736 + MIR SINE MIR 2 92 -170 227 170 57 0 chr3 10437647 10437700 -217086878 - MLT1D LTR MaLR -401 104 49 324 293 153 19 chr3 10438106 10438263 -217086315 + MIR SINE MIR 58 235 -27 2163 120 3 22 chr3 10438395 10438711 -217085867 + AluSx SINE Alu 1 310 -2 270 0 0 0 chr3 10438735 10438765 -217085813 + (CA)n Simple_repeat Simple_repeat 1 30 0 307 288 72 85 chr3 10439354 10439590 -217084988 + L1MC4a LINE L1 5815 6047 -1761 1228 227 91 50 chr3 10440033 10440452 -217084126 + MER63B DNA MER1_type 1 436 0 194 338 93 0 chr3 10440558 10440697 -217083881 - MIR SINE MIR 0 262 111 2055 206 26 14 chr3 10441009 10441436 -217083142 - MSTB1 LTR MaLR 0 432 1 592 256 6 36 chr3 10441814 10441982 -217082596 - MER5B DNA MER1_type -10 168 6 2207 76 0 13 chr3 10442015 10442316 -217082262 + AluY SINE Alu 9 305 -6 28 29 0 0 chr3 10442493 10442528 -217082050 + AT_rich Low_complexity Low_complexity 1 35 0 1141 68 7 0 chr3 10442816 10442964 -217081614 + L1PA7 LINE L1 5999 6147 -7 185 324 28 39 chr3 10443566 10443682 -217080896 + MIR SINE MIR 7 89 -119 896 250 43 20 chr3 10444041 10444341 -217080237 + LTR16A LTR ERVL 95 401 -49 467 284 130 17 chr3 10444659 10445068 -217079510 - L1MC4 LINE L1 0 8042 7588 424 203 122 14 chr3 10445070 10445114 -217079464 - L1MA10 LINE L1 -2 6332 6289 2570 237 66 22 chr3 10445114 10445661 -217078917 - L1ME1 LINE L1 -44 6122 5601 2495 65 0 0 chr3 10445661 10445968 -217078610 - AluY SINE Alu -4 307 1 2570 237 66 22 chr3 10445968 10447040 -217077538 - L1ME1 LINE L1 -565 5601 4428 538 326 19 25 chr3 10447033 10447355 -217077223 - L1MC4 LINE L1 -452 7590 7271 * 186 231 0 0 chr3 10447960 10447999 -217076579 - L2 LINE L2 -17 3296 3258 1070 141 9 61 chr3 10452013 10452226 -217072352 - MLT2A2 LTR ERVL -251 202 1 216 289 144 10 chr3 10452226 10452330 -217072248 + MIR SINE MIR 90 207 -55 438 243 21 36 chr3 10453563 10453703 -217070875 - L2 LINE L2 -1 3312 3175 292 319 44 0 chr3 10455352 10455465 -217069113 + MIR SINE MIR 49 166 -96 23 0 0 0 chr3 10455608 10455631 -217068947 + AT_rich Low_complexity Low_complexity 1 23 0 59 88 0 0 chr3 10456173 10456275 -217068303 + AT_rich Low_complexity Low_complexity 1 102 0 2561 43 0 0 chr3 10456275 10456597 -217067981 - L1PA4 LINE L1 -134 6021 5700 719 34 0 0 chr3 10456597 10456685 -217067893 + L1PA4 LINE L1 5618 5705 -450 380 285 70 55 chr3 10457678 10457878 -217066700 - MER63A DNA MER1_type -3 207 5 252 0 0 0 chr3 10458053 10458081 -217066497 + (CAT)n Simple_repeat Simple_repeat 2 29 0 296 289 125 13 chr3 10458308 10458460 -217066118 + MIR SINE MIR 72 240 -22 241 291 9 55 chr3 10458663 10458773 -217065805 - L2 LINE L2 -873 2441 2337 684 216 30 82 chr3 10459166 10459397 -217065181 - MER58A DNA MER1_type 0 224 6 217 319 80 26 chr3 10459419 10459532 -217065046 + L2 LINE L2 3189 3307 -6 297 172 0 0 chr3 10461038 10461102 -217063476 + (TGGA)n Simple_repeat Simple_repeat 1 64 0 248 315 0 9 chr3 10461297 10461405 -217063173 - MER103 DNA DNA -48 118 12 314 209 0 30 chr3 10462422 10462489 -217062089 + L3 LINE CR1 1227 1291 -286 347 263 74 0 chr3 10463285 10463380 -217061198 + L2 LINE L2 3195 3296 -17 236 186 17 0 chr3 10463462 10463521 -217061057 + (TA)n Simple_repeat Simple_repeat 1 60 0 3467 78 13 0 chr3 10464027 10464474 -217060104 + MLT2A2 LTR ERVL 1 453 0 527 189 184 31 chr3 10464486 10464601 -217059977 + L1MA9 LINE L1 6019 6115 -197 2229 105 36 33 chr3 10464601 10464964 -217059614 - THE1B LTR MaLR 0 364 1 527 189 184 31 chr3 10464964 10465076 -217059502 + L1MA9 LINE L1 6115 6281 -31 4319 63 2 4 chr3 10465278 10465835 -217058743 + L1PA8A LINE L1 5563 6118 -13 432 234 98 103 chr3 10467183 10467589 -217056989 - LTR33A LTR ERVL 0 523 120 2049 139 0 26 chr3 10468358 10468660 -217055918 - AluSx SINE Alu -18 294 1 231 246 78 70 chr3 10469119 10469161 -217055417 + MIR SINE MIR 118 158 -104 1995 178 78 10 chr3 10469161 10469560 -217055018 + MSTB LTR MaLR 1 426 0 231 246 78 70 chr3 10469560 10469659 -217054919 + MIR SINE MIR 158 260 -2 189 371 73 8 chr3 10470048 10470172 -217054406 + MIR SINE MIR 118 249 -13 2289 102 0 41 chr3 10470207 10470522 -217054056 + AluSq SINE Alu 1 302 -11 203 171 0 0 chr3 10471006 10471047 -217053531 + (TA)n Simple_repeat Simple_repeat 1 41 0 232 203 109 70 chr3 10471111 10471239 -217053339 + MER113 DNA MER1_type? 3 135 -386 32 57 0 0 chr3 10471239 10471292 -217053286 + AT_rich Low_complexity Low_complexity 1 53 0 279 333 85 23 chr3 10471593 10471722 -217052856 + MIR3 SINE MIR 10 146 -62 30 0 0 0 chr3 10472516 10472546 -217052032 + AT_rich Low_complexity Low_complexity 1 30 0 2114 108 3 0 chr3 10472866 10473153 -217051425 - AluSq SINE Alu -25 288 1 346 202 36 0 chr3 10473476 10473560 -217051018 - MLT1I LTR MaLR -4 405 319 319 309 52 58 chr3 10473843 10474134 -217050444 + MLT1K LTR MaLR 138 426 -162 184 348 65 39 chr3 10474421 10474576 -217050002 + L2 LINE L2 2820 2978 -294 275 288 45 9 chr3 10475477 10475588 -217048990 + LTR67 LTR ERVL 409 523 -34 368 302 0 35 chr3 10476946 10477062 -217047516 + L2 LINE L2 3202 3313 0 1366 183 51 36 chr3 10477097 10477453 -217047125 + MLT1B LTR MaLR 30 390 0 271 296 84 0 chr3 10477455 10477597 -217046981 + L2 LINE L2 2749 2902 -412 220 318 83 30 chr3 10477705 10477837 -217046741 + L2 LINE L2 3134 3272 0 582 311 57 38 chr3 10477929 10478062 -217046516 + L1ME3A LINE L1 5465 5594 -576 879 210 23 27 chr3 10478062 10478281 -217046297 + MER20 DNA MER1_type 2 219 0 582 311 57 38 chr3 10478281 10478568 -217046010 + L1ME3A LINE L1 5594 5893 -277 1595 236 141 19 chr3 10479559 10480147 -217044431 + L1MC4 LINE L1 6485 7144 -898 341 206 0 0 chr3 10480147 10480220 -217044358 + L1MC4a LINE L1 7137 7209 -599 1478 211 17 34 chr3 10480224 10480464 -217044114 - MER2 DNA MER2_type 0 345 111 1147 122 117 0 chr3 10480464 10480669 -217043909 + MER30 DNA MER1_type 1 229 -1 1478 211 17 34 chr3 10480669 10480779 -217043799 - MER2 DNA MER2_type -234 111 1 1477 223 132 29 chr3 10480779 10481326 -217043252 + L1MC4 LINE L1 7295 7897 -145 1687 167 60 33 chr3 10481549 10481914 -217042664 - THE1C LTR MaLR 0 375 1 1817 183 6 10 chr3 10482371 10482683 -217041895 + AluSx SINE Alu 1 311 -1 487 336 82 66 chr3 10482712 10483152 -217041426 + L1M2 LINE L1 1 447 -6402 209 83 28 0 chr3 10483810 10483846 -217040732 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 12090 223 37 14 chr3 10483948 10487764 -217036814 + L1PA15 LINE L1 1664 5567 -1282 4428 128 30 3 chr3 10487765 10488491 -217036087 + L1PA15 LINE L1 6116 6861 -7 23 0 0 0 chr3 10488586 10488609 -217035969 + AT_rich Low_complexity Low_complexity 1 23 0 929 199 10 0 chr3 10488711 10488912 -217035666 + L1PB1 LINE L1 2 204 -6659 * 11724 184 88 13 chr3 10488885 10493028 -217031550 + L1PB1 LINE L1 601 5337 -1530 2298 122 0 0 chr3 10493028 10493340 -217031238 + AluSx SINE Alu 1 312 0 11724 184 88 13 chr3 10493340 10494994 -217029584 + L1PB1 LINE L1 5337 6865 -2 186 125 0 0 chr3 10495296 10495307 -217029271 + (TAA)n Simple_repeat Simple_repeat 1 11 -21 2123 78 7 3 chr3 10495307 10495590 -217028988 + AluY SINE Alu 1 284 -27 186 125 0 0 chr3 10495590 10495610 -217028968 + (TAA)n Simple_repeat Simple_repeat 10 32 0 260 310 89 6 chr3 10495649 10495807 -217028771 - MIR SINE MIR -50 212 42 26 64 0 0 chr3 10495807 10495854 -217028724 + AT_rich Low_complexity Low_complexity 1 47 0 239 346 144 19 chr3 10496595 10496699 -217027879 + L2 LINE L2 3175 3291 -22 279 351 0 0 chr3 10497612 10497689 -217026889 - L2 LINE L2 -2 3311 3235 22637 72 15 1 chr3 10497705 10501508 -217023070 - L1PA6 LINE L1 -1 6153 2305 181 57 57 0 chr3 10501508 10501543 -217023035 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 22637 72 15 1 chr3 10501543 10501609 -217022969 - L1PA6 LINE L1 -3849 2305 2241 509 316 60 23 chr3 10501632 10501847 -217022731 + MIR SINE MIR 33 255 -7 1449 312 30 11 chr3 10502025 10502582 -217021996 + L1M1 LINE L1 19 586 -6623 298 155 121 0 chr3 10502585 10502643 -217021935 + Charlie3 DNA MER1_type 6 70 -2640 * 1335 162 57 142 chr3 10502629 10502981 -217021597 + Charlie3 DNA MER1_type 17 2711 0 322 248 77 43 chr3 10503050 10503167 -217021411 + L1M1 LINE L1 677 797 -6412 3074 234 70 2 chr3 10503319 10504147 -217020431 + L1M1 LINE L1 1439 2322 -4887 4922 204 26 11 chr3 10504153 10505395 -217019183 + L1M1 LINE L1 5106 6366 -842 1653 144 81 17 chr3 10505411 10505757 -217018821 + L1M1 LINE L1 6448 6815 -550 1210 56 12 0 chr3 10505782 10505943 -217018635 - L1P3 LINE L1 -459 5713 5551 * 27532 119 16 72 chr3 10505940 10508074 -217016504 - L1P3 LINE L1 -1007 5139 2887 2117 120 0 3 chr3 10508074 10508365 -217016213 + AluY SINE Alu 5 294 -17 27532 119 16 72 chr3 10508365 10511661 -217012917 - L1P3 LINE L1 -3259 2887 12 255 252 52 17 chr3 10511792 10511907 -217012671 + L1MC4 LINE L1 7924 8042 0 375 316 64 23 chr3 10513168 10513386 -217011192 - MIR SINE MIR -34 228 2 180 0 0 0 chr3 10514465 10514485 -217010093 + (A)n Simple_repeat Simple_repeat 1 20 0 336 274 113 8 chr3 10514530 10514654 -217009924 - MIR3 SINE MIR -50 158 22 203 179 0 0 chr3 10514983 10515022 -217009556 + A-rich Low_complexity Low_complexity 4 42 0 460 183 208 0 chr3 10515566 10515686 -217008892 - MIR SINE MIR -90 172 28 369 285 73 36 chr3 10516244 10516409 -217008169 - MIR SINE MIR -71 191 21 2208 204 33 70 chr3 10516732 10517364 -217007214 + LTR9 LTR ERV1 1 609 -3 606 242 35 37 chr3 10517648 10517842 -217006736 + MIR SINE MIR 59 254 -8 1786 254 33 80 chr3 10518201 10518964 -217005614 + MER21B LTR ERV1 13 739 -124 222 372 68 7 chr3 10519352 10519500 -217005078 + MIR3 SINE MIR 25 181 -27 * 331 328 69 17 chr3 10519481 10519655 -217004923 + MER5A DNA MER1_type 7 189 0 3548 141 77 10 chr3 10519798 10520506 -217004072 + LTR1B LTR ERV1 1 785 0 407 262 299 0 chr3 10521560 10521804 -217002774 + MER5C DNA MER1_type 2 318 -6 1434 208 45 20 chr3 10523874 10524273 -217000305 + LTR37B LTR ERV1 60 468 0 218 56 28 0 chr3 10524445 10524481 -217000097 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 230 290 221 0 chr3 10524519 10524650 -216999928 + MIR3 SINE MIR 33 192 -16 21 0 0 0 chr3 10525110 10525131 -216999447 + AT_rich Low_complexity Low_complexity 1 21 0 593 263 41 12 chr3 10526436 10526607 -216997971 - MIR SINE MIR -3 259 84 231 312 0 0 chr3 10526895 10526972 -216997606 - MLT1I LTR MaLR -254 155 79 2284 110 3 3 chr3 10527202 10527503 -216997075 - AluSc SINE Alu -8 301 1 288 188 27 98 chr3 10527694 10527806 -216996772 - Charlie8 DNA MER1_type -2237 180 77 2099 116 0 14 chr3 10527910 10528204 -216996374 - AluSg SINE Alu -20 290 1 228 211 18 18 chr3 10529049 10529106 -216995472 + LTR40b LTR ERVL 329 385 -77 870 244 73 0 chr3 10529133 10529367 -216995211 - MER5C DNA MER1_type -73 251 1 203 250 40 40 chr3 10529426 10529502 -216995076 + MIR SINE MIR 187 262 0 1947 134 42 0 chr3 10531220 10531504 -216993074 + AluSx SINE Alu 3 298 -14 947 209 134 11 chr3 10532476 10532753 -216991825 - MLT1D LTR MaLR -29 476 166 1326 164 108 16 chr3 10532753 10533268 -216991310 + LTR36 LTR ERV1 1 611 0 843 194 6 12 chr3 10533268 10533438 -216991140 - MLT1D LTR MaLR -336 169 1 905 110 0 14 chr3 10533454 10533600 -216990978 + (GAAA)n Simple_repeat Simple_repeat 1 144 0 1411 256 152 16 chr3 10535118 10535626 -216988952 + MLT1G LTR MaLR 14 590 0 206 265 20 0 chr3 10536257 10536306 -216988272 + L2 LINE L2 2708 2757 -557 269 244 277 38 chr3 10536399 10536612 -216987966 - L2 LINE L2 -16 3297 3034 22 0 0 0 chr3 10536692 10536714 -216987864 + AT_rich Low_complexity Low_complexity 1 22 0 382 265 54 0 chr3 10537002 10537149 -216987429 - L1MC5 LINE L1 -546 7415 7261 289 308 5 56 chr3 10537275 10537364 -216987214 - L1MC4 LINE L1 -743 7299 7224 1958 154 3 10 chr3 10537364 10537675 -216986903 - AluSc SINE Alu 0 309 1 289 308 5 56 chr3 10537675 10537780 -216986798 - L1MC4 LINE L1 -818 7224 7115 1616 141 8 0 chr3 10537930 10538171 -216986407 - AluY SINE Alu 0 311 69 522 326 54 15 chr3 10538218 10538246 -216986332 - L1MC4a LINE L1 -911 6897 6872 1132 172 84 116 chr3 10538246 10538711 -216985867 - LTR7 LTR ERV1 0 450 1 522 326 54 15 chr3 10538711 10539014 -216985564 - L1MC4a LINE L1 -936 6872 6633 34407 94 16 14 chr3 10539064 10542767 -216981811 + L1PA6 LINE L1 11 3733 -2421 441 0 0 0 chr3 10542767 10542816 -216981762 + (CA)n Simple_repeat Simple_repeat 2 50 0 34407 94 16 14 chr3 10542816 10545244 -216979334 + L1PA6 LINE L1 3733 6154 0 338 288 86 74 chr3 10545306 10545549 -216979029 - L1MC4a LINE L1 -1283 6525 6280 381 250 62 81 chr3 10545992 10546119 -216978459 - L1ME1 LINE L1 -315 5851 5723 303 71 0 0 chr3 10546119 10546161 -216978417 + (TG)n Simple_repeat Simple_repeat 2 43 0 381 250 62 81 chr3 10546161 10546305 -216978273 - L1ME1 LINE L1 -443 5723 5585 5422 86 33 10 chr3 10546320 10546546 -216978032 + L1PA10 LINE L1 5332 5551 -617 3709 199 24 75 chr3 10546546 10547568 -216977010 + LTR5 LTR ERVK 1 969 0 5422 86 33 10 chr3 10547568 10548159 -216976419 + L1PA10 LINE L1 5551 6168 0 260 250 114 23 chr3 10548177 10548265 -216976313 - L1ME1 LINE L1 -2471 5571 5476 1326 223 59 48 chr3 10548288 10548819 -216975759 - L1ME1 LINE L1 -105 6061 5593 288 314 29 6 chr3 10548818 10548990 -216975588 - L1MEc LINE L1 -5411 985 810 * 547 206 0 87 chr3 10548997 10549062 -216975516 - FLAM_A SINE Alu -187 115 65 1412 229 17 7 chr3 10549062 10549359 -216975219 + AluJb SINE Alu 1 300 -12 547 206 0 87 chr3 10549359 10549419 -216975159 - FLAM_A SINE Alu -237 65 1 598 287 84 28 chr3 10549427 10550077 -216974501 - L1MEc LINE L1 -5634 762 36 900 332 115 37 chr3 10550509 10551316 -216973262 - L2 LINE L2 -477 2837 1968 259 298 96 56 chr3 10551701 10551899 -216972679 - MIR SINE MIR -29 233 28 207 258 25 126 chr3 10552388 10552550 -216972028 - MIR SINE MIR -56 152 5 343 320 33 8 chr3 10553241 10553363 -216971215 + MIR SINE MIR 27 151 -57 924 238 111 23 chr3 10553437 10553907 -216970671 + L1M4 LINE L1 2211 2721 -3425 328 272 121 91 chr3 10553921 10554129 -216970449 + L1M4c LINE L1 1349 1572 -4812 1915 129 44 35 chr3 10554129 10554469 -216970109 + MER61A LTR ERV1 1 343 0 328 272 121 91 chr3 10554469 10554591 -216969987 + L1M4c LINE L1 1572 1689 -4695 348 330 75 5 chr3 10554988 10555188 -216969390 + L1M4c LINE L1 2470 2683 -3699 245 360 7 14 chr3 10556426 10556565 -216968013 - L3 LINE CR1 -191 1386 1249 444 37 0 0 chr3 10556701 10556755 -216967823 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 222 240 70 50 chr3 10557178 10557278 -216967300 + MER5B DNA MER1_type 76 177 -1 301 244 70 23 chr3 10557472 10557558 -216967020 + MER5A DNA MER1_type 14 103 -86 1851 189 83 41 chr3 10557627 10558087 -216966491 - MLT2B3 LTR ERVL -1 553 75 362 104 60 0 chr3 10558184 10558251 -216966327 - MLT2B3 LTR ERVL -483 71 1 283 296 93 9 chr3 10558570 10558678 -216965900 + MIR SINE MIR 94 210 -52 646 329 40 4 chr3 10559142 10559370 -216965208 - MIR SINE MIR -7 255 20 236 360 67 0 chr3 10559390 10559465 -216965113 - L2 LINE L2 -50 3222 3143 239 284 103 17 chr3 10560932 10561048 -216963530 - MER117 DNA MER1_type -54 143 18 539 314 114 36 chr3 10561326 10561528 -216963050 - L2 LINE L2 -503 2811 2626 1210 196 38 92 chr3 10561528 10561920 -216962658 - MLT1A2 LTR MaLR -3 371 1 539 314 114 36 chr3 10561920 10562102 -216962476 - L2 LINE L2 -688 2626 2397 391 283 38 38 chr3 10562232 10562391 -216962187 - MIR SINE MIR 0 262 104 455 304 84 56 chr3 10562432 10562791 -216961787 + MLT1I LTR MaLR 40 408 -1 3348 121 26 31 chr3 10563577 10564163 -216960415 - LTR1 LTR ERV1 0 785 203 1191 138 11 46 chr3 10564157 10564418 -216960160 - LTR1 LTR ERV1 -533 252 1 * 305 308 15 23 chr3 10564606 10564736 -216959842 - MLT1K LTR MaLR -18 570 442 216 0 0 0 chr3 10564880 10564904 -216959674 + (A)n Simple_repeat Simple_repeat 1 24 0 492 317 114 51 chr3 10565347 10565945 -216958633 - L2 LINE L2 -15 3257 2629 237 65 0 0 chr3 10566228 10566259 -216958319 + (T)n Simple_repeat Simple_repeat 1 31 0 342 327 154 3 chr3 10568121 10568348 -216956230 - MIR SINE MIR -1 261 8 279 0 0 0 chr3 10569368 10569399 -216955179 + (CA)n Simple_repeat Simple_repeat 2 32 0 221 57 29 0 chr3 10569399 10569434 -216955144 + (GA)n Simple_repeat Simple_repeat 1 36 0 506 208 28 56 chr3 10569551 10569695 -216954883 + MLT1J LTR MaLR 3 142 -369 867 252 100 29 chr3 10569809 10570150 -216954428 + LTR16C LTR ERVL 127 491 0 580 294 65 26 chr3 10570321 10570552 -216954026 + MIR SINE MIR 17 256 -6 225 257 40 14 chr3 10571075 10571149 -216953429 + L2 LINE L2 2686 2761 -553 241 390 48 7 chr3 10571271 10571417 -216953161 + L2 LINE L2 2922 3073 -199 529 274 37 0 chr3 10571835 10571999 -216952579 + MIR SINE MIR 93 262 0 302 391 36 0 chr3 10572209 10572319 -216952259 + L2 LINE L2 3147 3260 -12 296 146 0 36 chr3 10572626 10572681 -216951897 + L2 LINE L2 3257 3309 -4 1796 172 3 25 chr3 10572836 10573187 -216951391 - AluJo SINE Alu 0 344 1 183 328 246 0 chr3 10573831 10573953 -216950625 + MIR SINE MIR 40 191 -71 226 314 64 64 chr3 10574200 10574356 -216950222 - MIR SINE MIR -87 175 20 297 253 0 38 chr3 10574427 10574506 -216950072 - MIR SINE MIR -61 201 126 339 259 44 15 chr3 10574588 10574723 -216949855 - MLT1K LTR MaLR -76 512 374 235 262 0 16 chr3 10576747 10576808 -216947770 + MLT1K LTR MaLR 187 246 -342 369 324 3 40 chr3 10578513 10578831 -216945747 + GA-rich Low_complexity Low_complexity 1 306 0 805 264 116 60 chr3 10579587 10579721 -216944857 + LTR16A1 LTR ERVL 3 128 -329 1976 147 3 26 chr3 10579721 10580027 -216944551 + AluSx SINE Alu 3 301 -11 805 264 116 60 chr3 10580027 10580323 -216944255 + LTR16A1 LTR ERVL 128 457 0 3854 167 34 47 chr3 10581220 10582015 -216942563 + LTR1 LTR ERV1 1 785 0 198 258 8 142 chr3 10582029 10582149 -216942429 + L2 LINE L2 3168 3271 -1 464 179 42 32 chr3 10582502 10582597 -216941981 + MER5A DNA MER1_type 4 99 -90 414 306 127 44 chr3 10582713 10582953 -216941625 + LTR16C LTR ERVL 72 357 -134 2849 228 80 18 chr3 10582953 10583731 -216940847 - LTR1B LTR ERV1 0 826 1 414 306 127 44 chr3 10583731 10583876 -216940702 + LTR16C LTR ERVL 357 489 -2 370 310 62 0 chr3 10583975 10584120 -216940458 + MER63A DNA MER1_type 57 210 0 987 307 63 65 chr3 10584276 10584654 -216939924 - L2 LINE L2 0 3272 2895 2150 137 0 3 chr3 10584654 10584967 -216939611 + AluSq SINE Alu 1 312 -1 987 307 63 65 chr3 10584967 10585412 -216939166 - L2 LINE L2 -377 2895 2432 207 0 0 0 chr3 10585437 10585460 -216939118 + (T)n Simple_repeat Simple_repeat 1 23 0 982 148 0 67 chr3 10585782 10585992 -216938586 + MER44D DNA MER2_type 29 494 -115 5998 98 9 7 chr3 10585996 10586889 -216937689 - L1PA10 LINE L1 -12 6156 5262 353 328 19 58 chr3 10587438 10587627 -216936951 - MIR3 SINE MIR -36 172 27 239 257 216 16 chr3 10588083 10588231 -216936347 + MIR SINE MIR 13 184 -55 380 358 57 0 chr3 10588245 10588368 -216936210 - L2 LINE L2 -6 3266 3137 2214 104 10 3 chr3 10588434 10588731 -216935847 + AluSx SINE Alu 1 299 -13 336 318 36 26 chr3 10589863 10590055 -216934523 + MLT1K LTR MaLR 395 588 0 1806 142 48 43 chr3 10590058 10590431 -216934147 + THE1C LTR MaLR 1 375 0 420 185 11 0 chr3 10590529 10590621 -216933957 - MER58B DNA MER1_type -9 332 240 2545 164 31 7 chr3 10592302 10592752 -216931826 - LOR1b LTR ERV1 0 461 1 227 266 0 0 chr3 10593271 10593335 -216931243 - MER117 DNA MER1_type -133 64 1 232 407 0 0 chr3 10593548 10593634 -216930944 + L2 LINE L2 2939 3024 -248 197 279 115 0 chr3 10594318 10594379 -216930199 + MIR SINE MIR 81 148 -114 514 266 41 35 chr3 10594508 10594677 -216929901 - MIR SINE MIR -58 204 35 617 267 46 63 chr3 10594885 10595170 -216929408 + MLT1J LTR MaLR 232 511 0 203 313 12 12 chr3 10595600 10595683 -216928895 - MIR SINE MIR -16 246 164 314 308 163 0 chr3 10596304 10596476 -216928102 + LTR33 LTR ERVL 1 200 -321 282 324 21 7 chr3 10596614 10596756 -216927822 + LTR33 LTR ERVL 374 517 -4 230 266 16 0 chr3 10597354 10597418 -216927160 + (TTCA)n Simple_repeat Simple_repeat 1 65 0 1007 149 0 6 chr3 10597587 10597768 -216926810 + L1 LINE L1 3389 3568 -2578 13389 144 36 20 chr3 10598893 10601273 -216923305 + Tigger1 DNA MER2_type 1 2418 0 2302 116 0 0 chr3 10601317 10601619 -216922959 - AluSx SINE Alu -10 302 1 191 122 0 24 chr3 10601805 10601846 -216922732 + (TA)n Simple_repeat Simple_repeat 2 41 0 775 245 66 9 chr3 10602345 10602557 -216922021 - MER58A DNA MER1_type 0 224 1 2371 188 47 2 chr3 10602753 10603200 -216921378 + LTR24 LTR ERV1 1 467 0 497 222 22 89 chr3 10603264 10603444 -216921134 + MIR3 SINE MIR 20 187 -21 201 348 111 39 chr3 10603770 10603977 -216920601 + L3 LINE CR1 1356 1577 0 312 177 0 152 chr3 10604133 10604212 -216920366 + L2 LINE L2 3246 3312 -1 266 307 94 19 chr3 10605894 10606106 -216918472 + L2 LINE L2 2749 2976 -338 327 188 38 38 chr3 10606261 10606421 -216918157 + (TTGTG)n Simple_repeat Simple_repeat 1 160 0 191 122 0 24 chr3 10606926 10606967 -216917611 + (TA)n Simple_repeat Simple_repeat 2 41 0 775 245 66 9 chr3 10607473 10607685 -216916893 - MER58A DNA MER1_type 0 224 1 1327 196 62 9 chr3 10607881 10608202 -216916376 + LTR24 LTR ERV1 1 338 -129 6029 38 0 1 chr3 10608571 10609340 -216915238 - L1P LINE L1 -1931 4215 3448 8990 39 1 1 chr3 10609342 10610537 -216914041 + L1P LINE L1 2251 3445 -2701 * 9612 63 10 2 chr3 10610531 10611881 -216912697 + L1P LINE L1 3996 5356 -790 1156 74 27 3 chr3 10611876 10612062 -216912516 - L1P2 LINE L1 -623 5531 5343 * 2222 184 45 45 chr3 10612982 10613492 -216911086 + MER67D LTR ERV1 1 510 -4 952 219 40 48 chr3 10613570 10613821 -216910757 + L2 LINE L2 2446 2694 -620 703 249 16 21 chr3 10613908 10614097 -216910481 + MER5A DNA MER1_type 1 188 -1 579 301 87 51 chr3 10614111 10614446 -216910132 + L2 LINE L2 2953 3299 -14 433 253 60 86 chr3 10614483 10614740 -216909838 - MER113 DNA MER1_type? -182 339 92 2146 108 0 14 chr3 10614740 10615027 -216909551 + AluSg SINE Alu 1 283 -27 433 253 60 86 chr3 10615027 10615117 -216909461 - MER113 DNA MER1_type? -429 92 1 584 341 85 23 chr3 10615976 10616413 -216908165 + LTR16C LTR ERVL 2 465 -26 887 136 31 0 chr3 10617504 10617666 -216906912 - L1MC1 LINE L1 -223 6110 5944 290 322 35 9 chr3 10617667 10617782 -216906796 - MIR SINE MIR -98 164 47 212 271 0 0 chr3 10618047 10618106 -216906472 - L2 LINE L2 0 3272 3214 418 260 43 117 chr3 10618795 10618903 -216905675 - MIR SINE MIR -12 250 166 1583 206 39 0 chr3 10618903 10619185 -216905393 + AluJb SINE Alu 1 293 -19 418 260 43 117 chr3 10619185 10619307 -216905271 - MIR SINE MIR -96 166 37 504 298 36 58 chr3 10619372 10619597 -216904981 + L2 LINE L2 3053 3272 0 721 214 71 0 chr3 10619697 10619851 -216904727 + MER63B DNA MER1_type 1 165 -271 197 306 153 0 chr3 10619905 10620003 -216904575 + MIR3 SINE MIR 91 203 -5 198 404 28 0 chr3 10620937 10621046 -216903532 - L2 LINE L2 -7 3265 3154 763 254 105 13 chr3 10621143 10621371 -216903207 + MIR SINE MIR 14 262 0 1703 141 45 14 chr3 10622459 10622749 -216901829 + AluSq SINE Alu 1 299 -14 1922 100 4 0 chr3 10623371 10623620 -216900958 - AluSp SINE Alu -17 296 47 2108 142 9 0 chr3 10624435 10624780 -216899798 - L1PB1 LINE L1 -8 6143 5796 342 131 0 0 chr3 10624790 10624904 -216899674 + (TA)n Simple_repeat Simple_repeat 1 114 0 343 298 9 18 chr3 10624905 10625019 -216899559 + L1MC4 LINE L1 6616 6728 -1314 12698 199 59 11 chr3 10625025 10631070 -216893508 - L1P5 LINE L1 -361 6506 16 643 304 143 36 chr3 10631318 10631845 -216892733 + L2 LINE L2 2723 3312 -1 298 328 23 46 chr3 10631859 10632033 -216892545 - MIR SINE MIR 0 262 93 2199 157 67 10 chr3 10632119 10632520 -216892058 + MSTB LTR MaLR 1 424 -2 181 339 53 53 chr3 10633688 10633859 -216890719 - L2 LINE L2 0 3272 3102 182 350 82 25 chr3 10634356 10634710 -216889868 - L2 LINE L2 -897 2417 2044 440 293 127 29 chr3 10635246 10635451 -216889127 - L2 LINE L2 0 3313 3089 1635 192 3 23 chr3 10635996 10636298 -216888280 - AluJo SINE Alu -16 296 1 12918 148 25 42 chr3 10636885 10637229 -216887349 + Tigger1 DNA MER2_type 1 349 -2069 180 0 0 0 chr3 10637229 10637249 -216887329 + (TC)n Simple_repeat Simple_repeat 1 20 0 12918 148 25 42 chr3 10637249 10637927 -216886651 + Tigger1 DNA MER2_type 349 1037 -1381 2233 114 3 0 chr3 10637927 10638235 -216886343 + AluSq SINE Alu 1 309 -4 12918 148 25 42 chr3 10638235 10638680 -216885898 + Tigger1 DNA MER2_type 1037 1488 -930 2566 33 0 3 chr3 10638680 10638981 -216885597 - AluY SINE Alu -11 300 1 12918 148 25 42 chr3 10638981 10639970 -216884608 + Tigger1 DNA MER2_type 1488 2418 0 509 214 209 8 chr3 10639984 10640218 -216884360 + MER113 DNA MER1_type? 121 401 -120 904 312 74 17 chr3 10640264 10640671 -216883907 + LTR16A LTR ERVL 16 445 -5 1590 119 0 21 chr3 10640680 10640916 -216883662 - AluSg/x SINE Alu -3 307 77 1030 39 0 0 chr3 10640998 10641127 -216883451 + L1PA5 LINE L1 6026 6154 0 1091 181 50 23 chr3 10641355 10641659 -216882919 - MER33 DNA MER1_type -22 302 1 591 317 116 0 chr3 10642260 10642484 -216882094 - MIR SINE MIR -3 259 10 216 194 0 0 chr3 10642652 10642688 -216881890 - MIR SINE MIR -59 149 114 273 185 0 0 chr3 10643593 10643647 -216880931 + MER116 DNA Mariner 7 60 -20 195 100 0 0 chr3 10643880 10643910 -216880668 + (TTA)n Simple_repeat Simple_repeat 1 30 0 5098 251 54 25 chr3 10644301 10645064 -216879514 + L1MB7 LINE L1 19 758 -5886 342 0 0 0 chr3 10645064 10645102 -216879476 + (CA)n Simple_repeat Simple_repeat 1 38 0 5098 251 54 25 chr3 10645102 10646123 -216878455 + L1MB7 LINE L1 758 1748 -4896 2176 92 0 44 chr3 10646123 10646438 -216878140 - AluY SINE Alu -10 301 1 5098 251 54 25 chr3 10646438 10648086 -216876492 + L1MB7 LINE L1 1748 3655 -2989 1457 130 31 0 chr3 10648133 10648356 -216876222 - MER30 DNA MER1_type 0 230 1 3415 219 29 16 chr3 10648449 10649232 -216875346 + L1MB7 LINE L1 5089 5893 -789 366 79 40 0 chr3 10649232 10649308 -216875270 + (TA)n Simple_repeat Simple_repeat 1 79 0 3415 219 29 16 chr3 10649308 10650012 -216874566 + L1MB7 LINE L1 5893 6587 -95 1836 182 18 12 chr3 10650013 10650354 -216874224 + MER61A LTR ERV1 1 343 0 2187 158 53 11 chr3 10650678 10651162 -216873416 + MER61A-int LTR ERV1 240 777 -4440 268 93 0 0 chr3 10651155 10651198 -216873380 + MER61A-int LTR ERV1 1320 1362 -3855 * 18976 120 31 19 chr3 10651200 10653509 -216871069 + MER61A-int LTR ERV1 2226 3510 -1707 2407 83 3 3 chr3 10653509 10653810 -216870768 + AluY SINE Alu 1 301 -10 18976 120 31 19 chr3 10653810 10655540 -216869038 + MER61A-int LTR ERV1 3510 5217 0 2112 155 9 6 chr3 10655540 10655882 -216868696 + MER61A LTR ERV1 1 343 0 387 125 56 0 chr3 10655888 10655960 -216868618 + L1MB7 LINE L1 6591 6666 -16 294 179 0 0 chr3 10656025 10656081 -216868497 + (TATATG)n Simple_repeat Simple_repeat 2 57 0 198 143 0 0 chr3 10656081 10656116 -216868462 + (CA)n Simple_repeat Simple_repeat 2 36 0 2720 202 59 12 chr3 10656485 10657079 -216867499 - LTR26E LTR ERV1 0 622 1 299 275 75 0 chr3 10657081 10657161 -216867417 - MIR SINE MIR -87 175 90 580 235 66 0 chr3 10657180 10657346 -216867232 + MLT1E LTR MaLR 1 177 -416 2771 173 92 25 chr3 10657354 10657965 -216866613 + LTR51 LTR ERV1 1 657 -14 5787 66 31 28 chr3 10657965 10658743 -216865835 + LTR17 LTR ERV1 1 780 0 2771 173 92 25 chr3 10658743 10658760 -216865818 + LTR51 LTR ERV1 657 671 0 1056 196 51 126 chr3 10658810 10658971 -216865607 + MLT1E LTR MaLR 210 329 -264 2718 180 73 49 chr3 10658971 10659681 -216864897 - LTR8A LTR ERV1 0 727 1 1056 196 51 126 chr3 10659681 10659891 -216864687 + MLT1E LTR MaLR 329 553 -40 2350 138 35 45 chr3 10659900 10660499 -216864079 + MER4B LTR ERV1 4 766 0 340 222 56 116 chr3 10660574 10660753 -216863825 - MER3 DNA MER1_type 0 209 44 2908 196 53 6 chr3 10660753 10660942 -216863636 + MER82 DNA MER2_type 1 180 -473 819 80 0 0 chr3 10660942 10661054 -216863524 + (TA)n Simple_repeat Simple_repeat 1 112 0 2908 196 53 6 chr3 10661054 10661485 -216863093 + MER82 DNA MER2_type 180 650 -3 340 222 56 116 chr3 10661485 10661521 -216863057 - MER3 DNA MER1_type -165 44 7 399 331 47 12 chr3 10661964 10662136 -216862442 - MER5A DNA MER1_type -5 184 7 222 118 0 0 chr3 10663085 10663119 -216861459 + (T)n Simple_repeat Simple_repeat 1 34 0 378 0 0 0 chr3 10663504 10663546 -216861032 + (TG)n Simple_repeat Simple_repeat 2 43 0 298 355 48 28 chr3 10663747 10663995 -216860583 + L2 LINE L2 2827 3079 -193 507 306 56 26 chr3 10664081 10664313 -216860265 + L2 LINE L2 3075 3313 0 190 301 49 49 chr3 10664314 10664437 -216860141 + MIR SINE MIR 140 262 0 2399 103 0 0 chr3 10665735 10666045 -216858533 + AluSq SINE Alu 1 310 -3 439 294 62 6 chr3 10666304 10666464 -216858114 - Charlie8 DNA MER1_type -2152 265 97 533 266 84 35 chr3 10666952 10667210 -216857368 - HAL1 LINE L1 -1133 1374 1089 2234 97 3 3 chr3 10667210 10667508 -216857070 - AluSx SINE Alu -14 298 1 533 266 84 35 chr3 10667508 10667643 -216856935 - HAL1 LINE L1 -1418 1089 962 2350 78 0 7 chr3 10667690 10667996 -216856582 - AluY SINE Alu -7 304 1 2511 260 39 25 chr3 10668000 10669644 -216854934 + L1MEc LINE L1 1599 3226 -2989 1457 130 31 0 chr3 10669691 10669914 -216854664 - MER30 DNA MER1_type 0 230 1 3415 219 29 17 chr3 10670007 10670791 -216853787 + L1MB7 LINE L1 4591 5395 -789 366 79 40 0 chr3 10670791 10670867 -216853711 + (TA)n Simple_repeat Simple_repeat 1 79 0 3415 219 29 17 chr3 10670867 10671571 -216853007 + L1MB7 LINE L1 5395 6089 -95 1836 182 18 12 chr3 10671572 10671913 -216852665 + MER61A LTR ERV1 1 343 0 2067 165 53 13 chr3 10672240 10672722 -216851856 + MER61A-int LTR ERV1 243 777 -4440 * 3903 103 12 5 chr3 10672715 10673375 -216851203 + MER61A-int LTR ERV1 1320 2030 -3187 439 294 62 6 chr3 10673947 10674107 -216850471 - Charlie8 DNA MER1_type -2152 265 97 677 268 77 87 chr3 10674595 10674853 -216849725 - HAL1 LINE L1 -1133 1374 1115 2234 97 3 3 chr3 10674853 10675151 -216849427 - AluSx SINE Alu -14 298 1 318 182 0 15 chr3 10675104 10675170 -216849408 - AluSg/x SINE Alu -120 180 116 * 677 268 77 87 chr3 10675151 10675333 -216849245 - HAL1 LINE L1 -1392 1115 933 2421 65 0 7 chr3 10675333 10675639 -216848939 - AluY SINE Alu -7 304 1 677 268 77 87 chr3 10675639 10675872 -216848706 - HAL1 LINE L1 -1574 933 704 2045 141 0 0 chr3 10675984 10676281 -216848297 + AluSx SINE Alu 1 297 -15 375 194 21 11 chr3 10676438 10676531 -216848047 - MER53 DNA DNA -8 181 88 281 111 74 0 chr3 10676516 10676570 -216848008 + MER53 DNA DNA 126 183 -6 * 378 292 48 84 chr3 10676582 10676830 -216847748 - HAL1 LINE L1 -2075 432 205 659 224 6 33 chr3 10676830 10677013 -216847565 - MER104 DNA MER2_type -1 179 2 378 292 48 84 chr3 10677013 10677202 -216847376 - HAL1 LINE L1 -2302 205 11 1026 259 52 32 chr3 10677725 10678251 -216846327 - L2 LINE L2 -34 3279 2749 313 177 0 152 chr3 10679930 10680009 -216844569 - L2 LINE L2 -1 3312 3246 208 348 111 39 chr3 10680165 10680372 -216844206 - L3 LINE CR1 0 1577 1356 487 222 22 89 chr3 10680698 10680878 -216843700 - MIR3 SINE MIR -21 187 20 2371 190 47 2 chr3 10680942 10681389 -216843189 - LTR24 LTR ERV1 0 467 1 788 245 66 9 chr3 10681585 10681797 -216842781 + MER58A DNA MER1_type 1 224 0 191 122 0 24 chr3 10682296 10682337 -216842241 + (TA)n Simple_repeat Simple_repeat 2 41 0 2084 136 0 0 chr3 10682523 10682825 -216841753 + AluSx SINE Alu 1 302 -10 5566 232 88 33 chr3 10682860 10683846 -216840732 - L1M4c LINE L1 -4794 1852 738 342 0 0 0 chr3 10683846 10683884 -216840694 + (TG)n Simple_repeat Simple_repeat 1 38 0 5566 232 88 33 chr3 10683884 10684647 -216839931 - L1M4c LINE L1 -5908 738 19 195 100 0 0 chr3 10685039 10685069 -216839509 + (TAA)n Simple_repeat Simple_repeat 1 30 0 288 185 0 0 chr3 10685303 10685357 -216839221 - MER116 DNA Mariner -20 60 7 239 242 0 0 chr3 10685464 10685526 -216839052 - MER103 DNA DNA -50 116 55 215 194 0 0 chr3 10686263 10686299 -216838279 + MIR SINE MIR 114 149 -59 593 317 116 0 chr3 10686467 10686691 -216837887 + MIR SINE MIR 10 259 -3 1177 181 50 23 chr3 10687292 10687596 -216836982 + MER33 DNA MER1_type 1 302 -22 1033 39 0 0 chr3 10687824 10687953 -216836625 - L1PA5 LINE L1 0 6154 6026 1572 119 0 21 chr3 10688035 10688271 -216836307 + AluSg/x SINE Alu 79 309 -3 1012 314 74 17 chr3 10688280 10688687 -216835891 - LTR16A LTR ERVL -5 445 16 559 224 71 11 chr3 10688784 10688967 -216835611 - MER113 DNA MER1_type? -207 314 121 796 168 37 6 chr3 10688981 10689142 -216835436 - Tigger1 DNA MER2_type 0 2418 2253 259 278 56 8 chr3 10689467 10689593 -216834985 + L1MD3 LINE L1 7807 7938 -57 315 322 0 0 chr3 10689845 10689935 -216834643 - L1MC4 LINE L1 -1339 6703 6614 418 314 74 26 chr3 10689987 10690216 -216834362 - MIR SINE MIR -11 251 12 1754 228 89 9 chr3 10690279 10690727 -216833851 - MLT1E3 LTR MaLR -2 622 139 285 83 0 0 chr3 10690789 10690825 -216833753 - MLT1E3 LTR MaLR -584 40 5 2262 107 13 0 chr3 10690876 10691175 -216833403 + AluSx SINE Alu 1 303 -9 5997 55 16 0 chr3 10691451 10692222 -216832356 - L1P LINE L1 -1368 4778 3996 * 9363 42 0 2 chr3 10692216 10693413 -216831165 - L1PA4 LINE L1 -2701 3445 2251 16114 33 1 0 chr3 10693415 10696123 -216828455 + L1PA4 LINE L1 3448 6155 0 28790 89 9 3 chr3 10696135 10700120 -216824458 - L1P LINE L1 -2135 4011 4 219 114 0 0 chr3 10700371 10700406 -216824172 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 636 330 44 0 chr3 10700629 10700856 -216823722 + MIR SINE MIR 2 238 -24 386 257 31 29 chr3 10702141 10702272 -216822306 + MIR SINE MIR 36 168 -40 900 256 91 20 chr3 10702555 10702950 -216821628 + LTR37A LTR ERV1 4 426 0 709 250 105 15 chr3 10703212 10703412 -216821166 + MLT1J LTR MaLR 294 511 0 207 277 26 142 chr3 10704679 10704834 -216819744 - MER5A DNA MER1_type -49 140 4 317 210 0 0 chr3 10704938 10705000 -216819578 - MSTD LTR MaLR 0 396 335 238 179 18 18 chr3 10705016 10705072 -216819506 + (TA)n Simple_repeat Simple_repeat 2 57 0 309 202 119 0 chr3 10705072 10705156 -216819422 - L1MC4 LINE L1 -1337 6705 6612 318 255 0 43 chr3 10705171 10705265 -216819313 + L1MC4 LINE L1 6616 6705 -1337 366 147 52 15 chr3 10705293 10705429 -216819149 + (TA)n Simple_repeat Simple_repeat 2 142 0 203 303 7 123 chr3 10706629 10706784 -216817794 - MER5A DNA MER1_type -49 140 4 389 161 0 0 chr3 10706887 10706949 -216817629 - MSTD LTR MaLR 0 396 335 562 196 6 6 chr3 10706965 10707138 -216817440 + (TA)n Simple_repeat Simple_repeat 2 174 0 310 286 0 22 chr3 10707145 10707236 -216817342 - L1MC4 LINE L1 -1339 6703 6615 * 337 258 22 0 chr3 10707156 10707245 -216817333 + L1MC4 LINE L1 6615 6705 -1337 229 142 57 19 chr3 10707273 10707379 -216817199 + (TA)n Simple_repeat Simple_repeat 1 110 0 241 270 0 11 chr3 10707380 10707469 -216817109 - L1MC4 LINE L1 -1341 6701 6614 203 188 21 0 chr3 10707475 10707523 -216817055 + (TA)n Simple_repeat Simple_repeat 1 49 0 330 235 59 12 chr3 10707524 10707609 -216816969 - L1MC4 LINE L1 -1340 6702 6614 508 101 58 18 chr3 10707615 10707899 -216816679 + (TA)n Simple_repeat Simple_repeat 1 295 0 344 156 33 39 chr3 10707920 10708100 -216816478 + (TA)n Simple_repeat Simple_repeat 1 179 0 26 0 0 0 chr3 10708112 10708138 -216816440 + AT_rich Low_complexity Low_complexity 1 26 0 323 199 39 19 chr3 10708138 10708254 -216816324 + (TA)n Simple_repeat Simple_repeat 1 122 -37 2326 88 0 3 chr3 10708254 10708549 -216816029 - AluSp SINE Alu -19 294 1 323 199 39 19 chr3 10708549 10708588 -216815990 + (TA)n Simple_repeat Simple_repeat 122 159 0 2087 222 35 48 chr3 10708614 10709136 -216815442 - MLT2B3 LTR ERVL -39 515 1 956 312 88 33 chr3 10710504 10711014 -216813564 + L3 LINE CR1 966 1503 -74 1853 158 61 28 chr3 10711091 10711145 -216813433 - THE1C LTR MaLR -1 374 323 2589 118 3 0 chr3 10711145 10711508 -216813070 + THE1B LTR MaLR 1 364 0 1853 158 61 28 chr3 10711508 10711815 -216812763 - THE1C LTR MaLR -52 323 1 202 276 0 17 chr3 10711958 10712016 -216812562 + GA-rich Low_complexity Low_complexity 6 62 0 255 79 0 0 chr3 10712119 10712157 -216812421 + (TG)n Simple_repeat Simple_repeat 1 38 0 336 244 35 12 chr3 10712565 10712651 -216811927 - L1MC4 LINE L1 -1340 6702 6615 511 121 50 18 chr3 10712656 10712942 -216811636 + (TA)n Simple_repeat Simple_repeat 1 295 0 415 178 43 21 chr3 10712963 10713289 -216811289 + (TA)n Simple_repeat Simple_repeat 1 333 0 2243 87 3 3 chr3 10713302 10713590 -216810988 - AluSp SINE Alu -25 288 1 28 0 0 0 chr3 10713597 10713625 -216810953 + AT_rich Low_complexity Low_complexity 1 28 0 1535 240 47 36 chr3 10713655 10714042 -216810536 - MLT2B3 LTR ERVL -39 515 125 334 155 127 28 chr3 10714850 10714921 -216809657 - THE1B LTR MaLR -286 78 1 202 276 0 17 chr3 10715064 10715122 -216809456 + GA-rich Low_complexity Low_complexity 6 62 0 255 79 0 0 chr3 10715225 10715263 -216809315 + (TG)n Simple_repeat Simple_repeat 1 38 0 695 187 84 0 chr3 10715489 10715557 -216809021 - MER104 DNA Tc2 -1718 180 119 747 61 10 0 chr3 10715557 10715656 -216808922 + L1PA5 LINE L1 6049 6148 -6 695 187 84 0 chr3 10715656 10715753 -216808825 - MER104 DNA Tc2 -1779 119 1 2388 180 95 15 chr3 10716001 10716529 -216808049 - L1MA4 LINE L1 -4 6478 5909 232 220 22 22 chr3 10716578 10716669 -216807909 - L1MC4 LINE L1 -1336 6706 6616 9108 166 25 18 chr3 10716705 10717135 -216807443 - L1MA4 LINE L1 -559 5923 5498 189 0 0 0 chr3 10717135 10717156 -216807422 + (TTA)n Simple_repeat Simple_repeat 2 22 0 9108 166 25 18 chr3 10717156 10718958 -216805620 - L1MA4 LINE L1 -984 5498 3690 4098 211 29 27 chr3 10718966 10721456 -216803122 - L1MA4 LINE L1 -3282 3046 380 843 233 48 29 chr3 10721904 10722110 -216802468 - MER63A DNA MER1_type 0 210 1 194 207 17 0 chr3 10722390 10722448 -216802130 + (TA)n Simple_repeat Simple_repeat 2 60 0 * 435 92 0 0 chr3 10722447 10722512 -216802066 + (GA)n Simple_repeat Simple_repeat 2 66 0 256 184 20 0 chr3 10722838 10722887 -216801691 + L2 LINE L2 3258 3307 -6 286 253 23 11 chr3 10723021 10723108 -216801470 + MIR SINE MIR 76 163 -99 202 308 46 0 chr3 10724389 10724454 -216800124 - L2 LINE L2 -8 3305 3238 191 268 205 16 chr3 10724464 10724591 -216799987 + MIR SINE MIR 111 261 -1 200 250 0 0 chr3 10724995 10725035 -216799543 + (TA)n Simple_repeat Simple_repeat 1 40 0 241 254 0 36 chr3 10725248 10725303 -216799275 - L2 LINE L2 -84 3188 3136 681 294 37 60 chr3 10725423 10725722 -216798856 - L2 LINE L2 -186 3127 2836 2106 141 30 28 chr3 10725729 10726092 -216798486 + THE1B LTR MaLR 1 364 0 396 295 172 37 chr3 10726165 10726625 -216797953 + MLT1G1 LTR MaLR 26 505 -50 2027 86 0 4 chr3 10726650 10726918 -216797660 - L1PA13 LINE L1 -3 6160 5894 226 325 97 18 chr3 10726980 10727094 -216797484 - MIR SINE MIR -77 185 63 189 176 20 78 chr3 10727782 10727833 -216796745 + L2 LINE L2 3257 3304 -9 206 222 0 22 chr3 10727839 10727884 -216796694 + MIR SINE MIR 109 152 -56 254 283 0 17 chr3 10728768 10728828 -216795750 + L2 LINE L2 3200 3258 -14 257 303 143 8 chr3 10729620 10729739 -216794839 + L2 LINE L2 3137 3271 -1 426 96 0 0 chr3 10730230 10730303 -216794275 + (TA)n Simple_repeat Simple_repeat 2 74 0 213 39 0 0 chr3 10730302 10730328 -216794250 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 439 315 104 71 chr3 10730816 10731406 -216793172 - L2 LINE L2 0 3272 2658 182 339 10 128 chr3 10731669 10731864 -216792714 - L2 LINE L2 -86 3186 3015 27 87 0 0 chr3 10731880 10731949 -216792629 + AT_rich Low_complexity Low_complexity 1 69 0 187 320 58 10 chr3 10731971 10732074 -216792504 - MIR SINE MIR -56 206 99 203 178 0 22 chr3 10732757 10732802 -216791776 + (TG)n Simple_repeat Simple_repeat 2 45 0 3671 184 15 32 chr3 10733877 10734589 -216789989 - L1MB3 LINE L1 -8 6175 5476 985 191 5 0 chr3 10734608 10734807 -216789771 - L1MA4 LINE L1 -5 6295 6096 1079 173 13 4 chr3 10734808 10735033 -216789545 - L1MB3 LINE L1 -683 5495 5269 840 221 35 0 chr3 10735101 10735273 -216789305 + MER58A DNA MER1_type 47 224 0 374 178 56 11 chr3 10735411 10735501 -216789077 + MER53 DNA DNA 95 188 -1 641 308 110 11 chr3 10736397 10736841 -216787737 + LTR33A LTR ERVL 16 521 -2 2212 115 3 0 chr3 10737912 10738217 -216786361 - AluSc SINE Alu -3 306 1 192 358 9 46 chr3 10738293 10738402 -216786176 - MIR3 SINE MIR -21 187 83 265 256 22 61 chr3 10738529 10738709 -216785869 + (CATATA)n Simple_repeat Simple_repeat 6 178 0 323 200 40 0 chr3 10740056 10740131 -216784447 - MLT1K LTR MaLR -25 563 486 289 418 0 0 chr3 10741440 10741543 -216783035 + L2 LINE L2 3137 3239 -33 621 319 21 21 chr3 10741560 10741795 -216782783 - MIR SINE MIR -6 256 22 2144 107 3 10 chr3 10741901 10742200 -216782378 + AluSq SINE Alu 3 299 -14 23 33 0 0 chr3 10742315 10742345 -216782233 + AT_rich Low_complexity Low_complexity 1 30 0 338 164 0 16 chr3 10742821 10742882 -216781696 + MLT2B1 LTR ERVL 4 63 -351 800 130 0 0 chr3 10742884 10742992 -216781586 + AluSq/x SINE Alu 28 135 -178 2286 125 0 0 chr3 10742992 10743304 -216781274 + AluSx SINE Alu 1 312 0 1889 189 115 22 chr3 10743314 10743692 -216780886 + MLT2B1 LTR ERVL 65 487 -33 204 40 0 0 chr3 10743692 10743717 -216780861 + (TG)n Simple_repeat Simple_repeat 2 26 0 1889 189 115 22 chr3 10743717 10743755 -216780823 + MLT2B1 LTR ERVL 487 520 0 31 26 0 0 chr3 10743800 10743838 -216780740 + AT_rich Low_complexity Low_complexity 1 38 0 353 274 37 79 chr3 10743976 10744066 -216780512 - HAL1 LINE L1 -694 1813 1734 1271 269 96 5 chr3 10744066 10744441 -216780137 - MLT1I LTR MaLR 0 409 1 353 274 37 79 chr3 10744441 10744540 -216780038 - HAL1 LINE L1 -773 1734 1632 611 227 0 16 chr3 10744818 10744946 -216779632 + MER3 DNA MER1_type 2 127 -82 232 222 6 136 chr3 10745772 10745864 -216778714 - L1MC4a LINE L1 -1842 5966 5906 1962 130 33 7 chr3 10745864 10746163 -216778415 - AluSg SINE Alu -3 307 1 232 222 6 136 chr3 10746163 10746246 -216778332 - L1MC4a LINE L1 -1902 5906 5814 830 171 94 22 chr3 10746286 10746467 -216778111 + MIR SINE MIR 42 235 -27 190 227 0 0 chr3 10746481 10746525 -216778053 - MER5A DNA MER1_type -139 50 7 288 369 31 15 chr3 10747386 10747516 -216777062 - MIR SINE MIR -81 181 50 625 273 64 64 chr3 10748336 10748480 -216776098 - LTR16C LTR ERVL 0 491 348 1937 191 43 5 chr3 10748480 10748852 -216775726 + MLT1B LTR MaLR 5 390 0 625 273 64 64 chr3 10748852 10749099 -216775479 - LTR16C LTR ERVL -142 349 100 184 350 60 10 chr3 10749277 10749377 -216775201 + L2 LINE L2 2950 3054 -218 216 311 19 19 chr3 10749802 10749908 -216774670 - MIR SINE MIR -60 148 43 2764 89 92 10 chr3 10750316 10750730 -216773848 + LTR7 LTR ERV1 1 448 -2 877 243 55 80 chr3 10750752 10751132 -216773446 + L2 LINE L2 2673 3049 -264 203 218 253 58 chr3 10751136 10751223 -216773355 + L2 LINE L2 3210 3313 0 351 44 0 0 chr3 10751228 10751273 -216773305 + (CA)n Simple_repeat Simple_repeat 2 46 0 723 281 23 0 chr3 10751682 10751903 -216772675 - LTR16C LTR ERVL 0 491 266 264 91 0 0 chr3 10752182 10752215 -216772363 + U2 snRNA snRNA 1 33 -155 1808 211 26 5 chr3 10752351 10752730 -216771848 + MLT2D LTR ERVL 9 395 -19 5080 161 21 35 chr3 10753052 10753325 -216771253 - L1MA7 LINE L1 0 6291 6016 2066 109 25 0 chr3 10753325 10753609 -216770969 - AluSx SINE Alu -21 291 1 5080 161 21 35 chr3 10753609 10754541 -216770037 - L1MA7 LINE L1 -275 6016 5106 215 182 13 0 chr3 10755511 10755588 -216768990 + (TA)n Simple_repeat Simple_repeat 2 79 0 26 30 0 0 chr3 10755872 10755905 -216768673 + AT_rich Low_complexity Low_complexity 1 33 0 1702 164 17 24 chr3 10756656 10756948 -216767630 + AluJb SINE Alu 1 290 -22 188 245 118 29 chr3 10756992 10757094 -216767484 + MIR SINE MIR 96 206 -56 1100 227 114 70 chr3 10757225 10757656 -216766922 - LTR16A1 LTR ERVL -3 454 5 338 253 6 114 chr3 10757904 10758070 -216766508 - MIR SINE MIR -8 254 107 314 400 8 0 chr3 10758352 10758472 -216766106 - L2 LINE L2 -4 3268 3148 1096 200 95 27 chr3 10759065 10759380 -216765198 - MSTD LTR MaLR 0 396 4 4712 243 39 41 chr3 10759383 10760629 -216763949 - MSTD-int LTR MaLR 0 1735 492 5137 160 17 40 chr3 10760636 10761223 -216763355 - MER49 LTR ERV1 -11 912 352 983 28 0 0 chr3 10761223 10761332 -216763246 + L1PA5 LINE L1 6046 6154 0 5137 160 17 40 chr3 10761332 10761677 -216762901 - MER49 LTR ERV1 -571 352 1 1879 230 20 49 chr3 10761677 10761940 -216762638 - MSTD-int LTR MaLR -1240 495 253 2105 146 0 0 chr3 10761940 10762241 -216762337 - AluSx SINE Alu -11 301 1 1879 230 20 49 chr3 10762241 10762486 -216762092 - MSTD-int LTR MaLR -1482 253 2 1626 235 25 38 chr3 10762489 10762889 -216761689 - MSTD LTR MaLR -1 395 1 977 311 115 21 chr3 10763458 10763970 -216760608 + MLT1K LTR MaLR 14 573 -15 383 265 91 8 chr3 10764354 10764486 -216760092 + LTR16C LTR ERVL 345 487 -4 236 333 87 40 chr3 10764688 10764814 -216759764 + MIR SINE MIR 20 151 -111 297 317 67 0 chr3 10765779 10765883 -216758695 + MER91C DNA MER1_type 1 111 -29 354 322 94 43 chr3 10766304 10766559 -216758019 + L1ME LINE L1 5556 5823 -298 635 268 93 66 chr3 10766761 10766980 -216757598 - HAL1 LINE L1 -5 2502 2290 1905 173 3 0 chr3 10766980 10767286 -216757292 + AluSx SINE Alu 3 309 -3 635 268 93 66 chr3 10767286 10767551 -216757027 - HAL1 LINE L1 -217 2290 2005 360 256 241 0 chr3 10767635 10767772 -216756806 - MIR SINE MIR -91 171 2 1814 266 58 40 chr3 10767857 10768439 -216756139 + MLT1E LTR MaLR 1 593 0 488 258 10 78 chr3 10770025 10770235 -216754343 - MIR SINE MIR -44 218 25 733 280 144 46 chr3 10770511 10770694 -216753884 - L2 LINE L2 0 3313 3149 2651 146 23 34 chr3 10770694 10771133 -216753445 + Tigger2a DNA MER2_type 1 434 0 733 280 144 46 chr3 10771133 10771494 -216753084 - L2 LINE L2 -164 3149 2715 207 313 134 42 chr3 10771837 10772054 -216752524 - L2 LINE L2 -193 3079 2843 1173 191 50 0 chr3 10772231 10772451 -216752127 - MER46A DNA MER2_type -5 231 1 803 268 45 0 chr3 10772451 10772675 -216751903 - MIR SINE MIR -27 235 2 370 348 14 29 chr3 10772817 10772955 -216751623 - L2 LINE L2 0 3272 3137 732 351 77 26 chr3 10773582 10774049 -216750529 - LTR16C LTR ERVL 0 491 1 220 231 19 0 chr3 10774051 10774103 -216750475 + MIR SINE MIR 102 154 -108 671 224 73 54 chr3 10774229 10774434 -216750144 - MER63A DNA MER1_type -1 209 1 2075 154 0 0 chr3 10774768 10775080 -216749498 + AluJb SINE Alu 1 312 0 435 152 0 0 chr3 10775104 10775183 -216749395 + G-rich Low_complexity Low_complexity 3 81 0 296 100 0 20 chr3 10775179 10775229 -216749349 + (GAAAA)n Simple_repeat Simple_repeat 1 49 0 * 952 212 97 81 chr3 10775299 10775679 -216748899 - LTR25 LTR ERV1 -330 464 36 4639 166 44 9 chr3 10775722 10776477 -216748101 - LTR39 LTR ERV1 -2 781 1 257 357 23 16 chr3 10776993 10777122 -216747456 - L3 LINE CR1 -31 1546 1417 538 375 8 8 chr3 10777128 10777373 -216747205 - MIR SINE MIR 0 262 18 194 350 39 19 chr3 10777480 10777583 -216746995 - L3 LINE CR1 -376 1201 1097 2532 174 19 5 chr3 10777689 10778109 -216746469 + MSTA LTR MaLR 1 426 -2 201 395 8 15 chr3 10778660 10778794 -216745784 - L3 LINE CR1 -1015 562 430 504 48 0 0 chr3 10778866 10778929 -216745649 + (TAGA)n Simple_repeat Simple_repeat 4 66 0 245 218 0 51 chr3 10778929 10779002 -216745576 + L1MC4 LINE L1 6622 6690 -1352 199 357 24 32 chr3 10779425 10779551 -216745027 + MIR3 SINE MIR 6 130 -78 490 331 18 0 chr3 10779777 10779940 -216744638 - MIR SINE MIR -96 166 1 201 74 0 0 chr3 10780606 10780633 -216743945 + (CA)n Simple_repeat Simple_repeat 2 28 0 373 264 246 0 chr3 10780875 10781042 -216743536 + L2 LINE L2 2579 2786 -528 284 319 128 84 chr3 10781119 10781454 -216743124 + L2 LINE L2 2918 3267 -5 2700 42 0 0 chr3 10782536 10782843 -216741735 - AluY SINE Alu -4 307 1 504 335 5 11 chr3 10785595 10785783 -216738795 - MER5A DNA MER1_type -2 187 1 180 0 0 0 chr3 10785884 10785904 -216738674 + (A)n Simple_repeat Simple_repeat 1 20 0 1727 182 3 25 chr3 10786738 10787056 -216737522 - AluJb SINE Alu -1 311 1 227 291 116 12 chr3 10787568 10787654 -216736924 - MIR SINE MIR -80 128 34 221 224 20 0 chr3 10787735 10787784 -216736794 - L2 LINE L2 0 3313 3264 216 286 0 16 chr3 10787834 10787897 -216736681 + MIR3 SINE MIR 116 177 -31 297 169 0 0 chr3 10788312 10788371 -216736207 + (TG)n Simple_repeat Simple_repeat 2 60 0 253 286 257 7 chr3 10792046 10792186 -216732392 - MER117 DNA MER1_type -6 191 17 638 307 47 14 chr3 10792284 10792499 -216732079 + MIR SINE MIR 35 256 -6 300 293 101 20 chr3 10792943 10793141 -216731437 + L2 LINE L2 2764 2977 -337 273 282 38 92 chr3 10793353 10793484 -216731094 + L2 LINE L2 3149 3272 0 2117 123 0 32 chr3 10793638 10793954 -216730624 + AluSx SINE Alu 1 306 -6 207 313 36 24 chr3 10794647 10794730 -216729848 - L2 LINE L2 0 3272 3189 4617 173 54 26 chr3 10795647 10796541 -216728037 - MER21A LTR ERV1 0 931 13 217 125 62 23 chr3 10796547 10796675 -216727903 + (TA)n Simple_repeat Simple_repeat 1 133 0 879 172 46 0 chr3 10797342 10797516 -216727062 + L1MD3 LINE L1 7804 7985 -10 318 180 0 0 chr3 10797704 10797765 -216726813 + (CA)n Simple_repeat Simple_repeat 2 62 0 227 184 26 79 chr3 10797770 10797846 -216726732 + L1MCa LINE L1 1995 2066 -4360 393 301 87 39 chr3 10797864 10798093 -216726485 - MIR SINE MIR -11 251 12 1991 201 158 26 chr3 10798156 10798702 -216725876 - MLT1E3 LTR MaLR -2 622 5 2286 107 13 0 chr3 10798753 10799052 -216725526 + AluSx SINE Alu 1 303 -9 1733 233 96 20 chr3 10800434 10800852 -216723726 + MLT1F LTR MaLR 16 478 -64 276 30 0 0 chr3 10800852 10800885 -216723693 + (CA)n Simple_repeat Simple_repeat 2 34 0 1733 233 96 20 chr3 10800885 10800956 -216723622 + MLT1F LTR MaLR 478 542 0 1816 182 0 3 chr3 10802009 10802322 -216722256 - AluJb SINE Alu 0 312 1 690 225 128 31 chr3 10802490 10802869 -216721709 + MLT1H LTR MaLR 76 548 -1 271 304 33 0 chr3 10802882 10802974 -216721604 - MIR SINE MIR -54 208 114 484 276 101 65 chr3 10802975 10803311 -216721267 - MLT1K LTR MaLR -58 530 120 222 344 0 0 chr3 10803848 10803909 -216720669 + MIR3 SINE MIR 145 205 -3 637 273 73 36 chr3 10803913 10804133 -216720445 + MIR SINE MIR 5 232 -30 415 287 44 33 chr3 10804152 10804333 -216720245 + L2 LINE L2 2641 2823 -491 504 270 11 39 chr3 10804364 10804542 -216720036 + L2 LINE L2 1653 1825 -1489 1179 22 0 7 chr3 10804584 10804723 -216719855 - AluY SINE Alu -14 297 160 403 304 122 21 chr3 10804740 10805026 -216719552 + L2 LINE L2 2340 2654 -660 1539 226 6 12 chr3 10805061 10805406 -216719172 - MER4D LTR ERV1 -7 896 554 1319 201 60 28 chr3 10805441 10805512 -216719066 - MER49 LTR ERV1 -630 293 226 1893 149 0 0 chr3 10805512 10805830 -216718748 - AluSx SINE Alu 0 318 1 1319 201 60 28 chr3 10805830 10806041 -216718537 - MER49 LTR ERV1 -697 226 1 1115 265 76 18 chr3 10806041 10806634 -216717944 + L2 LINE L2 2682 3307 -6 416 301 92 60 chr3 10806681 10806930 -216717648 + L2 LINE L2 3016 3272 0 1366 184 130 12 chr3 10808605 10808944 -216715634 + MLT2D LTR ERVL 8 486 -34 2089 104 0 7 chr3 10809071 10809377 -216715201 + AluSx SINE Alu 9 312 0 254 313 0 0 chr3 10810709 10810773 -216713805 + MIR SINE MIR 54 117 -91 240 328 39 23 chr3 10810981 10811109 -216713469 + MIR3 SINE MIR 51 180 -28 405 290 82 29 chr3 10811586 10811793 -216712785 - MIR SINE MIR 0 262 45 260 383 7 7 chr3 10813005 10813159 -216711419 - MIR SINE MIR -12 250 97 2894 85 95 5 chr3 10813457 10813868 -216710710 + LTR7 LTR ERV1 1 448 -2 20629 84 24 18 chr3 10813870 10816840 -216707738 + HERVH LTR ERV1 1 2987 -4726 903 142 20 0 chr3 10816834 10816982 -216707596 + HERVH LTR ERV1 3140 3290 -4423 * 3410 111 4 6 chr3 10816972 10817475 -216707103 + HERVH LTR ERV1 3492 3993 -3720 4464 139 1 1 chr3 10817477 10818139 -216706439 + HERVH LTR ERV1 4488 5149 -2564 1432 124 18 5 chr3 10818140 10818357 -216706221 + HERVH LTR ERV1 5600 5819 -1894 * 2422 98 53 13 chr3 10818355 10818732 -216705846 + HERVH LTR ERV1 7322 7713 0 2957 75 95 5 chr3 10818732 10819143 -216705435 + LTR7 LTR ERV1 1 448 -2 189 263 113 0 chr3 10819738 10819818 -216704760 - MIR SINE MIR -95 167 79 209 357 10 10 chr3 10819996 10820094 -216704484 - MIR SINE MIR -149 113 16 1549 249 60 29 chr3 10820550 10821079 -216703499 - L1MD2 LINE L1 -397 5962 5616 2300 117 42 36 chr3 10821079 10821439 -216703139 + THE1B LTR MaLR 3 364 0 1549 249 60 29 chr3 10821439 10821493 -216703085 - L1MD2 LINE L1 -743 5616 5565 286 284 37 0 chr3 10821643 10821724 -216702854 + LTR33A LTR ERVL 71 154 -369 353 309 148 38 chr3 10821880 10822072 -216702506 - MIR SINE MIR -40 222 5 3913 120 66 66 chr3 10822099 10822873 -216701705 - LTR1 LTR ERV1 0 785 12 24 53 0 0 chr3 10823248 10823286 -216701292 + AT_rich Low_complexity Low_complexity 1 38 0 527 198 10 10 chr3 10823644 10823740 -216700838 + MER81 DNA DNA 2 97 -17 350 104 0 0 chr3 10823822 10823874 -216700704 - MLT2B1 LTR ERVL -3 517 399 614 133 9 0 chr3 10823874 10823987 -216700591 + (CA)n Simple_repeat Simple_repeat 1 114 0 244 167 30 30 chr3 10825080 10825146 -216699432 + (CAGAGA)n Simple_repeat Simple_repeat 5 70 0 599 240 39 29 chr3 10825240 10825448 -216699130 - Charlie1 DNA MER1_type -2 2759 2550 1928 208 44 20 chr3 10825462 10825915 -216698663 - Charlie1a DNA MER1_type -747 708 245 2311 181 46 46 chr3 10826151 10826647 -216697931 - MER67D LTR ERV1 -18 496 1 1241 74 27 3 chr3 10827590 10827776 -216696802 + L1P2 LINE L1 5343 5531 -623 * 14348 49 4 1 chr3 10827771 10829674 -216694904 - L1P LINE L1 -790 5356 3448 7962 37 0 1 chr3 10829676 10830722 -216693856 + L1P LINE L1 2251 3295 -2851 387 259 26 43 chr3 10830879 10830995 -216693583 + L2 LINE L2 3200 3313 0 1219 188 135 9 chr3 10832669 10832988 -216691590 + MLT2D LTR ERVL 8 366 -48 2093 120 0 32 chr3 10833135 10833443 -216691135 + AluSx SINE Alu 9 306 -6 206 313 36 24 chr3 10834139 10834222 -216690356 - L2 LINE L2 0 3272 3189 4165 175 54 27 chr3 10835139 10836034 -216688544 - MER21A LTR ERV1 0 931 13 217 125 62 23 chr3 10836040 10836168 -216688410 + (TA)n Simple_repeat Simple_repeat 2 134 0 738 184 46 0 chr3 10836835 10837009 -216687569 + L1MD3 LINE L1 7804 7985 -10 290 197 13 13 chr3 10837339 10837415 -216687163 - Charlie1a DNA MER1_type -1135 320 245 22013 172 21 36 chr3 10837419 10839545 -216685033 - L1MA3 LINE L1 -13 7711 5554 947 117 0 22 chr3 10839545 10839725 -216684853 + (TTC)n Simple_repeat Simple_repeat 2 177 0 22013 172 21 36 chr3 10839725 10839745 -216684833 - L1MA3 LINE L1 -2170 5554 5535 1848 179 7 3 chr3 10839745 10840047 -216684531 - AluSx SINE Alu -9 303 1 22013 172 21 36 chr3 10840047 10845802 -216678776 - L1MA3 LINE L1 -2189 5535 16 1032 217 43 27 chr3 10845805 10846063 -216678515 - Charlie1a DNA MER1_type -1193 262 1 230 93 0 23 chr3 10846574 10846617 -216677961 + (GGA)n Simple_repeat Simple_repeat 1 42 0 403 244 117 84 chr3 10846823 10847097 -216677481 - MLT1I LTR MaLR -53 356 74 2564 64 0 0 chr3 10847913 10848224 -216676354 - AluY SINE Alu 0 311 1 297 0 0 0 chr3 10848905 10848938 -216675640 + (TG)n Simple_repeat Simple_repeat 2 34 0 408 230 9 0 chr3 10848978 10849091 -216675487 - L1ME LINE L1 -5259 811 698 1653 191 30 1 chr3 10849123 10849503 -216675075 - L1MB5 LINE L1 -2 6178 5787 3041 233 109 23 chr3 10849518 10850098 -216674480 - L1M4 LINE L1 -3850 2532 2003 2093 143 187 9 chr3 10850098 10850537 -216674041 + LTR44 LTR ERV1 1 517 -2 3041 233 109 23 chr3 10850537 10851148 -216673430 - L1M4 LINE L1 -4379 2003 1237 1644 191 34 8 chr3 10851154 10851676 -216672902 - L1MC/D LINE L1 -743 5403 4902 731 272 67 70 chr3 10853284 10853700 -216670878 - MLT1J2 LTR MaLR -14 436 22 221 355 0 13 chr3 10853735 10853811 -216670767 - L2 LINE L2 -14 3258 3184 214 388 54 0 chr3 10853822 10853969 -216670609 - L2 LINE L2 -852 2462 2308 204 286 78 0 chr3 10854143 10854220 -216670358 - L2 LINE L2 -1651 1663 1581 240 227 0 0 chr3 10854468 10854512 -216670066 + L2 LINE L2 3221 3264 -8 302 250 150 25 chr3 10854523 10854723 -216669855 - L1MC4a LINE L1 -1876 5932 5708 581 49 12 0 chr3 10854729 10854810 -216669768 + (TAGA)n Simple_repeat Simple_repeat 3 84 0 1963 158 0 16 chr3 10854877 10855193 -216669385 + AluSx SINE Alu 1 311 -1 302 242 48 0 chr3 10855773 10855835 -216668743 - L2 LINE L2 -1 3271 3207 302 311 9 9 chr3 10856100 10856206 -216668372 + MIR SINE MIR 111 216 -46 246 278 247 0 chr3 10856755 10856852 -216667726 - L2 LINE L2 -993 2321 2201 25 0 0 0 chr3 10857104 10857129 -216667449 + AT_rich Low_complexity Low_complexity 1 25 0 313 250 0 34 chr3 10857968 10858056 -216666522 + MLT2E LTR ERVL 32 116 -512 573 246 94 6 chr3 10858141 10858312 -216666266 - MER5A DNA MER1_type -2 187 2 1264 247 82 5 chr3 10858659 10859064 -216665514 + L1ME1 LINE L1 5724 6159 -7 2367 97 10 0 chr3 10859140 10859449 -216665129 + AluSx SINE Alu 1 312 0 197 252 178 28 chr3 10859449 10859556 -216665022 - MIR3 SINE MIR -1 207 85 460 218 171 18 chr3 10860700 10860870 -216663708 + MER3 DNA MER1_type 7 202 -7 519 216 16 24 chr3 10861136 10861285 -216663293 - MLT1I LTR MaLR 0 409 280 408 272 105 37 chr3 10861311 10861502 -216663076 - MLT1I LTR MaLR -205 204 1 503 268 100 67 chr3 10861628 10861867 -216662711 - MIR SINE MIR -13 249 3 393 211 88 26 chr3 10863444 10863558 -216661020 + L1ME1 LINE L1 5996 6116 -50 30 0 0 0 chr3 10863581 10863611 -216660967 + AT_rich Low_complexity Low_complexity 1 30 0 847 93 0 0 chr3 10863639 10863747 -216660831 + FRAM SINE Alu 39 146 -30 27 0 0 0 chr3 10863750 10863777 -216660801 + AT_rich Low_complexity Low_complexity 1 27 0 334 272 192 8 chr3 10864283 10864408 -216660170 - MIR SINE MIR -75 187 40 326 306 6 45 chr3 10864822 10864979 -216659599 - MIR SINE MIR -92 170 20 230 257 36 0 chr3 10865063 10865203 -216659375 + (TA)n Simple_repeat Simple_repeat 2 146 0 23 0 0 0 chr3 10865412 10865435 -216659143 + AT_rich Low_complexity Low_complexity 1 23 0 438 338 6 12 chr3 10865585 10865745 -216658833 - MIR SINE MIR -32 230 72 349 190 51 15 chr3 10865857 10865994 -216658584 + (TA)n Simple_repeat Simple_repeat 1 142 0 705 71 0 10 chr3 10866129 10866228 -216658350 + MER4A LTR ERV1 1 98 -566 1560 117 163 85 chr3 10866228 10866603 -216657975 + MER4A LTR ERV1 261 664 0 269 247 41 10 chr3 10866603 10866695 -216657883 - MER117 DNA MER1_type -67 130 36 180 161 0 0 chr3 10867363 10867394 -216657184 - L2 LINE L2 -20 3293 3263 188 316 0 18 chr3 10867439 10867496 -216657082 - MIR SINE MIR -63 145 90 1462 157 141 0 chr3 10867498 10867746 -216656832 + AluSg SINE Alu 1 283 -27 435 342 87 27 chr3 10867781 10868114 -216656464 - LTR16C LTR ERVL -9 482 130 247 253 6 118 chr3 10868247 10868417 -216656161 + LTR16A LTR ERVL 112 262 -188 473 324 112 27 chr3 10869976 10870306 -216654272 + MLT1J2 LTR MaLR 72 429 -21 247 273 65 0 chr3 10870315 10870392 -216654186 + MIR SINE MIR 178 259 -3 265 228 41 76 chr3 10871006 10871151 -216653427 - MLT1K LTR MaLR -20 568 429 472 234 19 91 chr3 10871236 10871390 -216653188 + L2 LINE L2 3169 3311 -2 211 333 103 0 chr3 10872850 10872967 -216651611 - L2 LINE L2 -3 3310 3182 24 0 0 0 chr3 10873897 10873921 -216650657 + AT_rich Low_complexity Low_complexity 1 24 0 321 211 0 28 chr3 10874055 10874126 -216650452 + Tigger2 DNA MER2_type 1 69 -2649 * 1267 132 5 5 chr3 10874124 10874336 -216650242 + Tigger2 DNA MER2_type 2280 2491 -227 608 213 0 0 chr3 10874336 10874444 -216650134 + AluSc SINE Alu 132 239 -70 2412 128 18 3 chr3 10874444 10874826 -216649752 + Tigger2 DNA MER2_type 2331 2718 0 937 247 14 0 chr3 10875592 10875811 -216648767 - MER58A DNA MER1_type -2 222 1 382 254 111 8 chr3 10875845 10875899 -216648679 - MER5A DNA MER1_type -30 159 112 2224 117 0 0 chr3 10875899 10876198 -216648380 + AluSq SINE Alu 1 299 -14 382 254 111 8 chr3 10876198 10876269 -216648309 - MER5A DNA MER1_type -77 112 21 2042 165 63 18 chr3 10876460 10876859 -216647719 - MSTB LTR MaLR 0 426 10 320 271 54 39 chr3 10877012 10877141 -216647437 + L2 LINE L2 3183 3313 0 244 221 103 73 chr3 10877350 10877486 -216647092 + MER3 DNA MER1_type 7 146 -63 1847 243 60 33 chr3 10877503 10878107 -216646471 - L1M4 LINE L1 -5921 621 2 182 333 78 33 chr3 10878116 10878206 -216646372 + L2 LINE L2 3002 3095 -177 336 307 88 9 chr3 10878299 10878413 -216646165 + L2 LINE L2 3137 3259 -13 1879 134 10 14 chr3 10878757 10879048 -216645530 - AluSx SINE Alu -2 310 21 268 312 52 75 chr3 10879199 10879372 -216645206 + MIR3 SINE MIR 7 175 -33 192 309 59 0 chr3 10879512 10879580 -216644998 - L2 LINE L2 -5 3267 3196 1811 165 54 14 chr3 10879864 10880215 -216644363 - MLT1A1 LTR MaLR 0 365 1 298 331 29 44 chr3 10880231 10880353 -216644225 + MIR SINE MIR 113 234 -28 1728 171 86 9 chr3 10880353 10880692 -216643886 - MLT1A1 LTR MaLR 0 365 1 298 331 29 44 chr3 10880692 10880705 -216643873 + MIR SINE MIR 234 246 -16 904 204 18 44 chr3 10880715 10880940 -216643638 + MER20 DNA MER1_type 1 219 0 201 167 0 42 chr3 10881099 10881117 -216643461 + CT-rich Low_complexity Low_complexity 2 19 -51 1762 153 52 30 chr3 10881117 10881484 -216643094 + THE1C LTR MaLR 1 375 0 201 167 0 42 chr3 10881484 10881537 -216643041 + CT-rich Low_complexity Low_complexity 19 70 0 261 365 24 42 chr3 10882162 10882272 -216642306 - L2 LINE L2 -177 3095 2987 1681 232 20 22 chr3 10882272 10882780 -216641798 + Charlie4a DNA MER1_type 2 508 0 261 365 24 42 chr3 10882780 10882836 -216641742 - L2 LINE L2 -285 2987 2932 510 274 174 19 chr3 10882881 10883093 -216641485 - MIR SINE MIR -7 255 11 493 347 87 4 chr3 10883139 10883381 -216641197 - MIR SINE MIR 0 262 1 451 370 8 33 chr3 10883428 10883671 -216640907 - L2 LINE L2 -488 2826 2590 216 307 50 84 chr3 10884115 10884294 -216640284 + L3b LINE CR1 1405 1577 -6 273 182 61 0 chr3 10885219 10885285 -216639293 + L1MA3 LINE L1 6236 6305 0 748 318 39 26 chr3 10885428 10885815 -216638763 - MLT1K LTR MaLR -136 452 61 211 361 41 0 chr3 10885873 10885970 -216638608 - L3b LINE CR1 -182 1401 1301 291 45 23 0 chr3 10887331 10887375 -216637203 - MADE1 DNA Mariner -35 45 1 373 294 49 14 chr3 10887412 10887555 -216637023 - MIR SINE MIR -113 149 2 1413 183 183 67 chr3 10888335 10888353 -216636225 + MLT1F1 LTR MaLR 1 16 -551 6430 132 21 70 chr3 10888353 10889647 -216634931 - Tigger3b DNA MER2_type 0 1231 1 1413 183 183 67 chr3 10889647 10889814 -216634764 + MLT1F1 LTR MaLR 16 162 -405 1632 116 0 21 chr3 10889814 10890055 -216634523 - AluSq SINE Alu -77 236 1 1413 183 183 67 chr3 10890055 10890376 -216634202 + MLT1F1 LTR MaLR 162 567 0 253 370 131 24 chr3 10891510 10891790 -216632788 - L2 LINE L2 -269 3003 2695 228 210 48 0 chr3 10892094 10892156 -216632422 - MLT1I LTR MaLR -22 387 323 2361 80 0 46 chr3 10893677 10894002 -216630576 - AluSg SINE Alu 0 310 1 4133 196 31 5 chr3 10894796 10894994 -216629584 - L1MD2 LINE L1 -9 6350 6159 288 0 0 0 chr3 10894994 10895026 -216629552 + (TG)n Simple_repeat Simple_repeat 2 33 0 4133 196 31 5 chr3 10895026 10895717 -216628861 - L1MD2 LINE L1 -200 6159 5437 209 158 23 53 chr3 10895793 10895926 -216628652 + (TA)n Simple_repeat Simple_repeat 2 130 0 223 135 0 39 chr3 10896035 10896087 -216628491 + (TA)n Simple_repeat Simple_repeat 2 51 0 225 221 323 0 chr3 10896152 10896279 -216628299 - L1MDb LINE L1 -4244 2162 1995 621 191 104 22 chr3 10896291 10896503 -216628075 + L1MDb LINE L1 1398 1585 -4957 4425 246 61 36 chr3 10896504 10897645 -216626933 - L1MDb LINE L1 -4425 1981 827 2021 148 6 6 chr3 10897645 10897956 -216626622 - AluSx SINE Alu -1 311 1 4425 246 61 36 chr3 10897956 10898797 -216625781 - L1MDb LINE L1 -5579 827 8 29 28 0 0 chr3 10899341 10899377 -216625201 + AT_rich Low_complexity Low_complexity 1 36 0 383 250 37 28 chr3 10900473 10900581 -216623997 - L2 LINE L2 -6 3266 3158 244 333 85 0 chr3 10900611 10900740 -216623838 - L3 LINE CR1 -258 1319 1180 735 161 27 27 chr3 10900744 10900893 -216623685 - AluJo SINE Alu -163 149 1 1058 213 10 0 chr3 10900998 10901200 -216623378 - MER20 DNA MER1_type 0 219 16 503 221 139 67 chr3 10901351 10901559 -216623019 + MIR SINE MIR 40 262 0 345 82 0 0 chr3 10902019 10902068 -216622510 + (CA)n Simple_repeat Simple_repeat 1 49 0 265 345 16 54 chr3 10902799 10902984 -216621594 - MIR SINE MIR -51 211 34 1812 224 67 14 chr3 10903073 10903653 -216620925 + L1MCa LINE L1 982 1592 -4834 658 203 42 36 chr3 10903651 10903843 -216620735 + L1MC3 LINE L1 6911 7103 -682 * 262 286 0 0 chr3 10903843 10903927 -216620651 + MLT1F1 LTR MaLR 42 125 -442 477 206 0 103 chr3 10903927 10904082 -216620496 + L1MC3 LINE L1 7189 7327 -458 2204 128 0 0 chr3 10904114 10904412 -216620166 + AluSx SINE Alu 1 298 -14 29 28 0 0 chr3 10904412 10904448 -216620130 + AT_rich Low_complexity Low_complexity 1 36 0 1368 180 30 51 chr3 10904448 10904821 -216619757 + L1MC3 LINE L1 7317 7681 -104 380 146 182 55 chr3 10904891 10905018 -216619560 + L1MC3 LINE L1 7643 7995 0 2269 86 0 38 chr3 10905031 10905375 -216619203 + AluY SINE Alu 1 332 0 896 286 49 9 chr3 10905404 10905753 -216618825 + L1MCa LINE L1 1887 2249 -4358 219 216 0 0 chr3 10906871 10906908 -216617670 + polypyrimidine Low_complexity Low_complexity 1 37 0 207 0 0 0 chr3 10906908 10906931 -216617647 + (T)n Simple_repeat Simple_repeat 1 23 0 345 327 33 20 chr3 10908155 10908305 -216616273 - MIR3 SINE MIR -10 198 47 3342 175 17 128 chr3 10909257 10909587 -216614991 + L1MC3 LINE L1 5338 5703 -2292 1207 63 0 0 chr3 10909587 10909745 -216614833 + L1PA5 LINE L1 5997 6154 0 3342 175 17 128 chr3 10909745 10910830 -216613748 + L1MC3 LINE L1 5703 6535 -1460 552 215 35 47 chr3 10910844 10911016 -216613562 + L1MC3 LINE L1 7125 7294 -491 983 217 105 43 chr3 10911026 10911330 -216613248 + MER2 DNA MER2_type 13 335 -10 220 389 22 0 chr3 10911541 10911631 -216612947 - L2 LINE L2 -45 3227 3136 814 152 8 37 chr3 10911773 10912013 -216612565 + MLT1A1 LTR MaLR 1 324 -41 834 239 143 71 chr3 10912365 10912813 -216611765 + MLT1J LTR MaLR 1 480 -31 2395 182 13 0 chr3 10913300 10913766 -216610812 - L1MC3 LINE L1 -10 7775 7304 1704 218 14 6 chr3 10914489 10914851 -216609727 + MLT1A1 LTR MaLR 1 365 0 621 263 33 16 chr3 10916430 10916772 -216607806 - LTR16A LTR ERVL -34 416 33 231 61 0 0 chr3 10917475 10917508 -216607070 + (TG)n Simple_repeat Simple_repeat 2 34 0 453 294 8 0 chr3 10918079 10918198 -216606380 + MLT1J2 LTR MaLR 65 184 -266 285 254 32 13 chr3 10918235 10918336 -216606242 + MLT1J2 LTR MaLR 302 450 0 654 332 46 11 chr3 10918351 10918631 -216605947 - L2 LINE L2 -1314 2000 1711 197 299 21 0 chr3 10918670 10918767 -216605811 + A-rich Low_complexity Low_complexity 6 104 0 237 300 10 0 chr3 10918768 10918868 -216605710 + (ATGGTG)n Simple_repeat Simple_repeat 4 104 0 239 326 7 0 chr3 10918879 10919026 -216605552 + (CAGAGA)n Simple_repeat Simple_repeat 3 150 0 2822 119 0 14 chr3 10919580 10919775 -216604803 - L1PA14 LINE L1 -239 5922 5726 1980 154 30 16 chr3 10919775 10920145 -216604433 - THE1C LTR MaLR 0 375 1 2822 119 0 14 chr3 10920145 10920384 -216604194 - L1PA14 LINE L1 -435 5726 5494 1288 142 9 4 chr3 10920384 10920607 -216603971 + L1PA14 LINE L1 5934 6159 -2 416 273 136 6 chr3 10920749 10920925 -216603653 - L2 LINE L2 -101 3212 3014 1728 194 3 7 chr3 10920928 10921237 -216603341 + AluJb SINE Alu 1 308 -4 23 0 0 0 chr3 10921247 10921270 -216603308 + AT_rich Low_complexity Low_complexity 1 23 0 1583 213 83 53 chr3 10921322 10921793 -216602785 - L1MC5 LINE L1 -304 7657 7159 909 188 21 11 chr3 10921793 10921979 -216602599 + MER5A DNA MER1_type 1 188 -1 1583 213 83 53 chr3 10921979 10922168 -216602410 - L1MC5 LINE L1 -802 7159 6977 446 258 73 13 chr3 10923144 10923424 -216601154 + LTR16A1 LTR ERVL 4 344 -113 344 205 0 24 chr3 10923568 10923651 -216600927 + MLT1K LTR MaLR 170 250 -338 794 178 74 35 chr3 10923721 10923952 -216600626 + MER96B DNA MER1_type? 1 240 -177 229 180 33 0 chr3 10923954 10924015 -216600563 + MLT1K LTR MaLR 353 415 -173 646 284 32 5 chr3 10925266 10925456 -216599122 + MIR SINE MIR 58 252 -10 226 311 107 0 chr3 10925501 10925604 -216598974 - L2 LINE L2 0 3272 3159 252 234 43 43 chr3 10926137 10926231 -216598347 - L2 LINE L2 -92 3221 3128 596 51 58 15 chr3 10926232 10926369 -216598209 + (TA)n Simple_repeat Simple_repeat 2 144 0 185 0 40 0 chr3 10926841 10926866 -216597712 + (TA)n Simple_repeat Simple_repeat 2 27 0 342 363 49 8 chr3 10926958 10927225 -216597353 - L2 LINE L2 -339 2975 2698 467 191 91 18 chr3 10928351 10928461 -216596117 - L2 LINE L2 0 3313 3196 331 245 98 10 chr3 10928506 10928608 -216595970 - MIR3 SINE MIR -31 177 67 498 342 101 17 chr3 10928630 10928867 -216595711 - MIR SINE MIR -4 258 2 243 300 14 71 chr3 10929228 10929368 -216595210 + MER69 DNA AcHobo 46 2526 0 280 291 19 16 chr3 10929394 10929514 -216595064 + MIR SINE MIR 27 144 -64 268 298 48 16 chr3 10929731 10929855 -216594723 - MLT1J LTR MaLR -147 364 237 854 193 133 0 chr3 10930127 10930293 -216594285 - MER5A DNA MER1_type 0 189 2 227 79 26 0 chr3 10930463 10930501 -216594077 + (TG)n Simple_repeat Simple_repeat 1 39 0 686 262 44 62 chr3 10931007 10931347 -216593231 + MER46C DNA MER2_type 1 334 -4 513 177 85 0 chr3 10931844 10931984 -216592594 - MER45A DNA AcHobo -17 161 1 212 326 34 22 chr3 10932812 10932901 -216591677 - MIR3 SINE MIR -7 201 112 257 153 0 17 chr3 10933390 10933449 -216591129 + (TAGG)n Simple_repeat Simple_repeat 1 58 0 1004 149 7 7 chr3 10933535 10933689 -216590889 + AluSq SINE Alu 140 293 -20 368 241 92 35 chr3 10934188 10934329 -216590249 + MIR3 SINE MIR 60 208 0 943 130 0 29 chr3 10934963 10935247 -216589331 + (GGAA)n Simple_repeat Simple_repeat 1 275 0 8739 20 0 2 chr3 10985559 10987264 -216537314 - L1PA3 LINE L1 -150 6005 4305 * 8786 31 4 0 chr3 10987261 10988366 -216536212 + L1PA3 LINE L1 3226 4334 -1812 859 228 6 6 chr3 10988491 10988662 -216535916 - MER5A DNA MER1_type -18 171 1 825 155 33 77 chr3 10988701 10988882 -216535696 - MER58A DNA MER1_type -4 220 48 228 316 38 30 chr3 10988926 10989059 -216535519 + L2 LINE L2 2930 3063 -209 277 293 67 71 chr3 10989079 10989318 -216535260 - L2 LINE L2 0 3313 3076 230 359 104 0 chr3 10989388 10989494 -216535084 + L2 LINE L2 3182 3298 -15 979 260 55 68 chr3 10989605 10990059 -216534519 - L2 LINE L2 0 3313 2866 1218 286 37 45 chr3 10990184 10990697 -216533881 + MLT1J LTR MaLR 3 511 0 267 235 66 52 chr3 10990896 10991032 -216533546 + LTR33 LTR ERVL 381 518 -3 206 71 0 71 chr3 10992080 10992122 -216532456 + (CAGAGA)n Simple_repeat Simple_repeat 2 40 0 228 349 124 24 chr3 10992206 10992375 -216532203 + MIR SINE MIR 20 205 -57 2237 173 143 15 chr3 10992403 10992947 -216531631 - MER90 LTR ERV1 0 614 1 327 85 0 0 chr3 10993013 10993060 -216531518 + (TG)n Simple_repeat Simple_repeat 2 48 0 307 330 62 0 chr3 10993700 10993812 -216530766 - MIR3 SINE MIR -17 191 73 276 304 0 0 chr3 10993915 10993994 -216530584 + MIR SINE MIR 172 250 -12 208 275 46 10 chr3 10994269 10994368 -216530210 - MIR SINE MIR -62 146 47 30 83 0 0 chr3 10995244 10995316 -216529262 + AT_rich Low_complexity Low_complexity 1 72 0 1970 107 28 3 chr3 10995688 10996015 -216528563 - SVA Other Other -339 1047 713 219 69 0 0 chr3 10996584 10996613 -216527965 + (A)n Simple_repeat Simple_repeat 1 29 0 675 312 66 21 chr3 10996631 10997009 -216527569 + LTR67 LTR ERVL 7 401 -156 21 0 0 0 chr3 10997246 10997267 -216527311 + AT_rich Low_complexity Low_complexity 1 21 0 2465 219 43 25 chr3 10998544 10999328 -216525250 + L1ME1 LINE L1 5236 6031 -135 616 211 124 5 chr3 10999970 11000133 -216524445 - MER5A DNA MER1_type -1 188 4 239 216 201 43 chr3 11000442 11000581 -216523997 + MLT1H LTR MaLR 2 162 -387 1770 156 58 22 chr3 11000966 11001326 -216523252 + THE1C LTR MaLR 1 373 -2 1261 322 173 20 chr3 11002027 11003042 -216521536 - L2 LINE L2 -339 2975 1805 234 333 28 0 chr3 11003461 11003533 -216521045 + L2 LINE L2 3240 3313 0 944 271 0 5 chr3 11004959 11005180 -216519398 - MER58A DNA MER1_type -4 220 1 654 287 60 32 chr3 11005344 11005550 -216519028 + L2 LINE L2 2788 2998 -315 2407 84 0 7 chr3 11005550 11005858 -216518720 - AluY SINE Alu -5 306 1 654 287 60 32 chr3 11005858 11005909 -216518669 + L2 LINE L2 2998 3046 -267 328 233 233 6 chr3 11005920 11006092 -216518486 - LTR33A LTR ERVL -13 510 300 679 293 116 0 chr3 11006492 11006734 -216517844 + L2 LINE L2 3044 3313 0 1963 198 8 3 chr3 11007044 11007427 -216517151 - MLT1B LTR MaLR 0 390 6 459 0 0 0 chr3 11008341 11008392 -216516186 + (CA)n Simple_repeat Simple_repeat 1 51 0 557 205 43 109 chr3 11008451 11008661 -216515917 - MIR3 SINE MIR -9 199 4 311 339 24 8 chr3 11008755 11008879 -216515699 + MIR SINE MIR 18 143 -65 1315 199 19 69 chr3 11009104 11009481 -216515097 - MLT2D LTR ERVL 0 414 57 389 20 0 20 chr3 11010305 11010356 -216514222 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 419 296 124 70 chr3 11010367 11010836 -216513742 - L2 LINE L2 -2 3311 2818 6042 167 20 20 chr3 11011377 11013660 -216510918 - L1MA9 LINE L1 0 6312 4018 581 350 29 48 chr3 11013671 11013985 -216510593 - L2 LINE L2 -1 3271 2964 376 229 147 0 chr3 11014025 11014134 -216510444 + MER20 DNA MER1_type 1 125 -94 * 776 180 42 0 chr3 11014131 11014298 -216510280 + MER20 DNA MER1_type 46 219 0 771 176 42 185 chr3 11014541 11014996 -216509582 - MLT1B LTR MaLR 0 390 1 313 320 23 100 chr3 11015125 11015384 -216509194 + L2 LINE L2 2991 3229 -43 414 320 0 31 chr3 11016114 11016242 -216508336 - MER5A DNA MER1_type 0 189 66 317 257 40 10 chr3 11016392 11016493 -216508085 - MER5A DNA MER1_type -77 112 9 453 242 97 32 chr3 11017287 11017411 -216507167 + MIR SINE MIR 1 132 -130 363 315 130 9 chr3 11018306 11018522 -216506056 + MIR SINE MIR 15 256 -6 307 308 150 28 chr3 11019201 11019448 -216505130 + L2 LINE L2 2986 3262 -10 334 287 93 9 chr3 11019831 11019939 -216504639 - L3 LINE CR1 -2 1575 1459 225 189 0 0 chr3 11019989 11020026 -216504552 - L2 LINE L2 -15 3298 3262 188 258 17 166 chr3 11020077 11020180 -216504398 - L3 LINE CR1 -108 1469 1352 814 158 0 0 chr3 11020180 11020307 -216504271 - FLAM_C SINE Alu -6 127 1 188 258 17 166 chr3 11020307 11020498 -216504080 - L3 LINE CR1 -225 1352 1219 182 147 44 132 chr3 11020948 11021016 -216503562 + L2 LINE L2 3211 3272 0 434 284 102 0 chr3 11021286 11021462 -216503116 + MER117 DNA MER1_type 4 197 0 181 326 169 11 chr3 11021493 11021582 -216502996 - MIR3 SINE MIR -103 105 3 711 216 74 17 chr3 11022298 11022466 -216502112 + MIR SINE MIR 77 257 -5 768 126 69 25 chr3 11022466 11022594 -216501984 - L1MA8 LINE L1 -4 6287 6149 291 28 0 0 chr3 11022594 11022630 -216501948 + (TG)n Simple_repeat Simple_repeat 1 36 0 768 126 69 25 chr3 11022630 11022660 -216501918 - L1MA8 LINE L1 -142 6149 6122 1450 198 68 52 chr3 11024107 11024475 -216500103 + MLT1A2 LTR MaLR 1 374 0 21 0 0 0 chr3 11024697 11024718 -216499860 + AT_rich Low_complexity Low_complexity 1 21 0 1250 266 71 63 chr3 11025314 11026026 -216498552 + L2 LINE L2 2464 3186 -127 2379 97 0 0 chr3 11026026 11026326 -216498252 + AluSc SINE Alu 1 300 -9 1250 266 71 63 chr3 11026326 11026454 -216498124 + L2 LINE L2 3186 3312 -1 1252 206 0 0 chr3 11026529 11026747 -216497831 + AluJo SINE Alu 1 218 -94 28 29 0 0 chr3 11026889 11026924 -216497654 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr3 11027334 11027364 -216497214 + AT_rich Low_complexity Low_complexity 1 30 0 5885 138 14 33 chr3 11029222 11030563 -216494015 - L1MA5A LINE L1 -5 6292 4960 1992 259 62 72 chr3 11030570 11031460 -216493118 + L1ME1 LINE L1 752 1649 -4566 201 39 0 0 chr3 11031460 11031486 -216493092 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 1992 259 62 72 chr3 11031486 11031953 -216492625 + L1ME1 LINE L1 1649 2119 -4096 2494 153 31 18 chr3 11031953 11032404 -216492174 - MSTB2 LTR MaLR 0 457 1 1992 259 62 72 chr3 11032404 11032989 -216491589 + L1ME1 LINE L1 2119 2710 -3505 257 293 0 0 chr3 11033058 11033140 -216491438 - L1ME1 LINE L1 -1200 5015 4934 2405 245 46 18 chr3 11033141 11034233 -216490345 + L1ME1 LINE L1 5039 6158 -77 186 206 0 0 chr3 11034296 11034364 -216490214 + A-rich Low_complexity Low_complexity 1 68 0 293 321 30 23 chr3 11034838 11034969 -216489609 - MLT1K LTR MaLR -285 303 172 2125 170 6 3 chr3 11035108 11035472 -216489106 + MLT1A1 LTR MaLR 1 365 0 2535 132 125 2 chr3 11035524 11035957 -216488621 - LTR12 LTR ERV1 -228 486 1 1022 284 78 50 chr3 11036207 11036729 -216487849 + MLT1K LTR MaLR 32 568 -20 258 251 120 41 chr3 11037157 11037302 -216487276 + MIR SINE MIR 17 172 -64 * 269 289 102 59 chr3 11037298 11037486 -216487092 + MIR3 SINE MIR 13 202 -60 231 318 11 11 chr3 11037686 11037774 -216486804 + MIR SINE MIR 20 107 -155 338 327 42 24 chr3 11037875 11038040 -216486538 - MIR SINE MIR -64 198 31 631 259 150 9 chr3 11038126 11038346 -216486232 - MIR SINE MIR -10 252 2 256 169 17 34 chr3 11038703 11038762 -216485816 + CT-rich Low_complexity Low_complexity 1 58 0 218 287 139 25 chr3 11039025 11039147 -216485431 - MIR SINE MIR -70 192 57 515 199 125 0 chr3 11039396 11039516 -216485062 + MIR SINE MIR 34 166 -62 695 269 30 15 chr3 11039604 11039805 -216484773 - MIR SINE MIR -55 207 4 928 160 43 5 chr3 11039820 11040007 -216484571 - MER20 DNA MER1_type 0 219 26 516 257 0 27 chr3 11040306 11040454 -216484124 + MER104 DNA Tc2 30 173 -7 422 233 275 0 chr3 11040586 11040706 -216483872 - MER91A DNA MER1_type -43 153 1 204 40 0 0 chr3 11040931 11040956 -216483622 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 702 235 37 0 chr3 11041607 11041769 -216482809 + MER58A DNA MER1_type 1 168 0 2054 139 72 31 chr3 11041772 11042260 -216482318 + MLT2A2 LTR ERVL 22 554 0 269 217 17 0 chr3 11042260 11042320 -216482258 + MER58A DNA MER1_type 164 224 0 2155 114 0 26 chr3 11042584 11042892 -216481686 + AluSx SINE Alu 1 300 -12 1560 242 79 23 chr3 11042935 11043414 -216481164 + MER41E LTR ERV1 7 512 0 1058 272 55 35 chr3 11043604 11044038 -216480540 - LTR16C LTR ERVL -5 486 44 633 322 74 27 chr3 11044755 11045162 -216479416 + MLT1K LTR MaLR 21 446 -142 535 316 105 39 chr3 11045302 11045634 -216478944 + L3 LINE CR1 911 1264 -313 371 82 14 0 chr3 11046137 11046200 -216478378 + Alu SINE Alu 243 297 -5 616 263 6 0 chr3 11046323 11046483 -216478095 - MER117 DNA MER1_type -36 161 1 2564 112 5 8 chr3 11047058 11047433 -216477145 - THE1C LTR MaLR 0 375 2 230 282 26 84 chr3 11047968 11048195 -216476383 - L2 LINE L2 0 3313 3100 296 24 24 0 chr3 11048248 11048289 -216476289 + (TGGA)n Simple_repeat Simple_repeat 3 44 0 249 289 40 40 chr3 11048787 11048939 -216475639 + MLT1I LTR MaLR 83 234 -175 21 57 0 0 chr3 11049275 11049310 -216475268 + AT_rich Low_complexity Low_complexity 1 35 0 203 194 0 0 chr3 11049709 11049745 -216474833 + A-rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr3 11050092 11050118 -216474460 + AT_rich Low_complexity Low_complexity 1 26 0 202 194 28 0 chr3 11050292 11050364 -216474214 + (TCCA)n Simple_repeat Simple_repeat 1 74 0 265 305 94 16 chr3 11054970 11055098 -216469480 + MIR3 SINE MIR 5 142 -66 577 235 148 31 chr3 11055344 11055540 -216469038 + MER58A DNA MER1_type 1 219 -5 214 369 45 36 chr3 11057012 11057123 -216467455 + L2 LINE L2 3153 3264 -8 277 271 187 19 chr3 11057178 11057285 -216467293 + L2 LINE L2 3147 3271 -1 264 274 0 0 chr3 11057364 11057437 -216467141 - MER58A DNA MER1_type -1 223 151 31117 108 14 28 chr3 11057437 11063650 -216460928 + L1PA7 LINE L1 26 6151 -3 465 290 43 32 chr3 11063650 11063718 -216460860 - MER58A DNA MER1_type -2232 188 122 3078 69 8 78 chr3 11063718 11064195 -216460383 + MLT2A1 LTR ERVL 1 444 0 465 290 43 32 chr3 11064195 11064312 -216460266 - MER58A DNA MER1_type -2298 122 1 228 111 0 0 chr3 11064560 11064596 -216459982 + (CA)n Simple_repeat Simple_repeat 1 36 0 1181 269 100 36 chr3 11064719 11065518 -216459060 + L1ME3A LINE L1 5291 6140 -30 868 247 119 39 chr3 11065679 11066116 -216458462 + MLT1G LTR MaLR 119 590 0 208 355 116 14 chr3 11066153 11066291 -216458287 - MIR SINE MIR -90 172 21 1623 211 14 14 chr3 11066300 11066665 -216457913 + MLT1A1 LTR MaLR 1 365 0 566 144 0 0 chr3 11066666 11066763 -216457815 + MLT1A1-int LTR MaLR 1 97 -1638 * 936 168 67 5 chr3 11066759 11066967 -216457611 + MLT-int LTR MaLR 1515 1735 0 192 361 107 8 chr3 11068621 11068743 -216455835 - L2 LINE L2 -47 3225 3092 524 242 97 98 chr3 11068801 11069168 -216455410 + MLT1J1 LTR MaLR 66 427 -19 270 0 0 0 chr3 11069207 11069237 -216455341 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 230 313 30 0 chr3 11069237 11069304 -216455274 - L2 LINE L2 -2 3311 3243 512 330 22 16 chr3 11069400 11069582 -216454996 - L2 LINE L2 -252 3061 2879 212 333 127 0 chr3 11070584 11070710 -216453868 + MIR3 SINE MIR 3 144 -64 1315 129 55 0 chr3 11070748 11070965 -216453613 + MER30 DNA MER1_type 2 230 0 1766 164 56 43 chr3 11070998 11071350 -216453228 + MLT2D LTR ERVL 1 347 -67 1679 192 75 21 chr3 11071350 11071725 -216452853 + MSTD LTR MaLR 1 395 -1 354 98 0 0 chr3 11071725 11071776 -216452802 + (CATA)n Simple_repeat Simple_repeat 4 54 0 1766 164 56 43 chr3 11071776 11071818 -216452760 + MLT2D LTR ERVL 346 401 -13 265 326 0 11 chr3 11071827 11071916 -216452662 - L2 LINE L2 -27 3286 3199 2587 213 19 57 chr3 11071927 11072556 -216452022 + MER77 LTR ERV1 1 605 0 273 297 27 27 chr3 11072557 11072668 -216451910 - L2 LINE L2 -10 3303 3193 358 332 41 71 chr3 11072846 11073042 -216451536 + L3 LINE CR1 1020 1209 -368 1078 186 34 0 chr3 11073051 11073255 -216451323 + MER20 DNA MER1_type 3 213 -6 181 414 36 0 chr3 11073297 11073408 -216451170 + L3 LINE CR1 1392 1506 -71 22 56 0 0 chr3 11073653 11073689 -216450889 + AT_rich Low_complexity Low_complexity 1 36 0 544 255 28 49 chr3 11073781 11073843 -216450735 - MIR SINE MIR -61 147 85 1312 183 137 105 chr3 11073843 11074347 -216450231 - MLT2B1 LTR ERVL 0 520 1 544 255 28 49 chr3 11074347 11074468 -216450110 - MIR SINE MIR -123 85 9 504 299 148 2 chr3 11074752 11075170 -216449408 - LTR33 LTR ERVL -2 519 41 514 328 107 10 chr3 11075292 11075771 -216448807 + L1ME4a LINE L1 5503 6027 -94 10998 25 0 0 chr3 11076046 11078102 -216446476 + L1PA3 LINE L1 4097 6152 -3 25 0 0 0 chr3 11078103 11078128 -216446450 + AT_rich Low_complexity Low_complexity 1 25 0 241 287 128 0 chr3 11078509 11078603 -216445975 - MIR SINE MIR -63 145 40 2231 160 68 2 chr3 11078672 11079072 -216445506 + MSTB LTR MaLR 1 426 0 803 191 42 18 chr3 11079672 11079840 -216444738 - FRAM SINE Alu -5 171 1 4906 149 13 11 chr3 11079936 11080968 -216443610 + L1PB2 LINE L1 5118 6151 0 396 200 105 0 chr3 11081222 11081317 -216443261 + Tigger3(Golem) DNA MER2_type 3 107 -2922 269 116 0 0 chr3 11081320 11081363 -216443215 + Tigger3(Golem) DNA MER2_type 2286 2328 -701 2865 100 7 7 chr3 11081365 11081775 -216442803 + L1PB3 LINE L1 5745 6154 0 34 55 0 0 chr3 11082290 11082345 -216442233 + AT_rich Low_complexity Low_complexity 1 55 0 3879 111 65 2 chr3 11082345 11082956 -216441622 + Tigger3(Golem) DNA MER2_type 2378 3027 -2 503 54 68 0 chr3 11083222 11083296 -216441282 + L1PA13 LINE L1 6084 6162 -1 523 296 15 0 chr3 11083567 11083699 -216440879 - L2 LINE L2 0 3272 3139 229 183 100 17 chr3 11083793 11083853 -216440725 + LTR16A LTR ERVL 21 85 -365 1118 283 46 11 chr3 11083866 11084233 -216440345 + LTR16A LTR ERVL 57 436 -14 396 365 37 10 chr3 11084242 11084576 -216440002 - L2 LINE L2 -292 3021 2681 191 279 54 45 chr3 11084775 11084849 -216439729 - MIR SINE MIR -61 147 70 303 83 317 0 chr3 11084849 11084909 -216439669 + MADE1 DNA Mariner 2 80 0 191 279 54 45 chr3 11084909 11084945 -216439633 - MIR SINE MIR -138 70 36 297 0 0 0 chr3 11085785 11085818 -216438760 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1783 267 75 21 chr3 11086262 11086866 -216437712 - L1ME3A LINE L1 -18 6152 5517 3527 259 110 45 chr3 11086898 11088765 -216435813 - HAL1 LINE L1 -4 2503 514 226 236 121 86 chr3 11088926 11089027 -216435551 - LTR67 LTR ERVL -13 544 435 2209 61 0 4 chr3 11089027 11089289 -216435289 + AluSq SINE Alu 39 299 -14 226 236 121 86 chr3 11089289 11089327 -216435251 - LTR67 LTR ERVL -122 435 400 723 237 48 71 chr3 11089745 11090040 -216434538 - HAL1 LINE L1 -2186 321 34 1188 263 73 16 chr3 11090645 11091026 -216433552 + MLT1D LTR MaLR 1 403 -102 355 166 69 18 chr3 11091058 11091383 -216433195 + (TA)n Simple_repeat Simple_repeat 1 341 0 300 204 4 4 chr3 11091385 11091472 -216433106 + MLT1D LTR MaLR 447 505 0 3723 219 129 87 chr3 11091472 11092787 -216431791 + MLT1D-int LTR MaLR 1 1371 0 1289 208 52 117 chr3 11092787 11093325 -216431253 + MLT1D LTR MaLR 1 503 -2 236 250 80 71 chr3 11093431 11093543 -216431035 + MIR SINE MIR 54 166 -96 583 325 66 26 chr3 11093956 11094335 -216430243 + MARNA DNA Mariner 94 487 -99 446 270 8 24 chr3 11094392 11094518 -216430060 + MIR SINE MIR 28 151 -111 253 246 15 0 chr3 11094523 11094588 -216429990 + MER94 DNA DNA 4 69 -65 4001 150 18 10 chr3 11094590 11095415 -216429163 + Tigger3b DNA MER2_type 1 934 -297 1215 134 0 31 chr3 11095406 11095600 -216428978 + Tigger3b DNA MER2_type 1044 1231 -1 * 967 236 82 40 chr3 11096306 11096704 -216427874 - MER21B LTR ERV1 -123 808 407 428 256 97 102 chr3 11096715 11096888 -216427690 + L2 LINE L2 2368 2540 -774 1593 206 0 0 chr3 11096888 11097170 -216427408 + AluJo SINE Alu 6 287 -25 428 256 97 102 chr3 11097170 11097407 -216427171 + L2 LINE L2 2540 2776 -538 697 281 166 11 chr3 11097871 11098348 -216426230 + L2 LINE L2 2740 3304 -9 191 111 0 28 chr3 11098359 11098395 -216426183 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 2278 115 0 0 chr3 11099044 11099349 -216425229 + AluY SINE Alu 1 305 -6 22 0 0 0 chr3 11099587 11099609 -216424969 + AT_rich Low_complexity Low_complexity 1 22 0 624 268 137 65 chr3 11101010 11101521 -216423057 + MLT1H1 LTR MaLR 5 552 -3 467 281 54 18 chr3 11101556 11101723 -216422855 + L2 LINE L2 2898 3070 -243 2054 164 53 14 chr3 11101996 11102412 -216422166 - MSTB1 LTR MaLR 0 432 1 1448 165 63 14 chr3 11102768 11102947 -216421631 - AluJo SINE Alu -8 304 104 2167 109 12 38 chr3 11102947 11103267 -216421311 - AluSp SINE Alu -1 312 1 1448 165 63 14 chr3 11103267 11103372 -216421206 - AluJo SINE Alu -208 104 6 280 189 14 81 chr3 11103857 11103888 -216420690 - L2 LINE L2 -1 3271 3239 2633 153 26 0 chr3 11103888 11104305 -216420273 + MSTA LTR MaLR 1 428 0 280 189 14 81 chr3 11104305 11104347 -216420231 - L2 LINE L2 -33 3239 3203 195 42 0 0 chr3 11104472 11104496 -216420082 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 212 233 0 70 chr3 11104528 11104614 -216419964 - L2 LINE L2 -75 3238 3159 221 247 37 0 chr3 11104756 11104837 -216419741 - L2 LINE L2 -265 3007 2924 569 182 147 65 chr3 11105902 11106072 -216418506 + LTR41 LTR ERVL 1 184 -589 365 267 127 76 chr3 11106352 11106527 -216418051 + LTR41 LTR ERVL 520 711 -62 918 195 13 49 chr3 11106527 11106753 -216417825 + MER20 DNA MER1_type 1 218 -1 365 267 127 76 chr3 11106753 11106813 -216417765 + LTR41 LTR ERVL 711 767 -6 249 77 77 0 chr3 11106781 11106820 -216417758 + LTR50 LTR ERVL 754 795 0 * 2419 83 3 6 chr3 11107254 11107568 -216417010 + AluSq SINE Alu 1 313 0 181 250 0 42 chr3 11107621 11107669 -216416909 + MER5A DNA MER1_type 44 89 -100 730 193 136 23 chr3 11107723 11107899 -216416679 - MER91A DNA MER1_type 0 196 1 220 287 183 17 chr3 11107981 11108096 -216416482 - L2 LINE L2 0 3272 3139 280 280 134 34 chr3 11108147 11108318 -216416260 - MIR SINE MIR -62 146 17 434 253 104 6 chr3 11108620 11108802 -216415776 + L2 LINE L2 3114 3313 0 234 336 0 19 chr3 11109218 11109325 -216415253 - MIR SINE MIR -64 144 40 833 224 39 24 chr3 11109521 11109726 -216414852 - MLT1H LTR MaLR 0 549 342 194 206 0 0 chr3 11109808 11109842 -216414736 + MIR SINE MIR 111 144 -64 764 282 53 0 chr3 11111103 11111330 -216413248 - MIR SINE MIR -22 240 2 300 312 0 0 chr3 11111552 11111645 -216412933 + MIR SINE MIR 170 262 0 396 40 0 0 chr3 11112418 11112468 -216412110 + (TTTA)n Simple_repeat Simple_repeat 4 53 0 1909 172 0 0 chr3 11112572 11112875 -216411703 - AluSx SINE Alu -7 305 3 305 203 51 38 chr3 11113121 11113200 -216411378 + MER116 DNA Mariner 1 80 0 213 324 0 15 chr3 11113202 11113270 -216411308 - MER5A DNA MER1_type -88 101 35 235 260 178 58 chr3 11113408 11113616 -216410962 + MLT1I LTR MaLR 171 403 -6 1884 253 29 35 chr3 11114245 11114795 -216409783 + MER74B LTR ERVL 76 622 0 234 143 0 79 chr3 11115481 11115544 -216409034 + L1MC4 LINE L1 6897 6954 -1088 649 193 17 0 chr3 11115545 11115664 -216408914 + MLT1D LTR MaLR 9 129 -376 1547 230 8 54 chr3 11115664 11116056 -216408522 + MLT1A2 LTR MaLR 1 374 0 * 1827 167 55 47 chr3 11116056 11116433 -216408145 + MLT1D LTR MaLR 125 504 -1 2176 206 129 24 chr3 11116435 11117072 -216407506 + L1MC3 LINE L1 6897 7600 -185 394 273 16 48 chr3 11117957 11118144 -216406434 + GA-rich Low_complexity Low_complexity 1 181 0 1931 172 27 6 chr3 11118674 11119011 -216405567 - MLT1A1 LTR MaLR 0 365 22 346 339 98 6 chr3 11119209 11119383 -216405195 - MIR SINE MIR -22 240 51 249 341 45 7 chr3 11119397 11119593 -216404985 + MIR SINE MIR 49 253 -9 242 200 0 0 chr3 11120386 11120431 -216404147 - MIR SINE MIR -108 154 110 226 347 0 0 chr3 11120457 11120532 -216404046 - MIR SINE MIR -1 261 187 1288 190 26 15 chr3 11120623 11121051 -216403527 + MLT1C LTR MaLR 1 462 -5 223 287 126 11 chr3 11121174 11121261 -216403317 - MIR SINE MIR -112 150 54 2455 84 0 0 chr3 11121290 11121588 -216402990 + AluY SINE Alu 1 298 -13 234 150 0 0 chr3 11121648 11121688 -216402890 + (CA)n Simple_repeat Simple_repeat 1 40 0 339 250 60 0 chr3 11122330 11122430 -216402148 + L2 LINE L2 3206 3311 -2 243 237 17 0 chr3 11122657 11122716 -216401862 + Charlie7 DNA MER1_type 46 105 -2507 2299 99 0 0 chr3 11122904 11123228 -216401350 - AluSx SINE Alu 0 312 1 1564 156 136 161 chr3 11123942 11124177 -216400401 + LTR64 LTR ERVK 1 240 -318 6118 91 18 21 chr3 11124177 11125377 -216399201 + SVA Other Other 1 868 -592 1564 156 136 161 chr3 11125377 11125390 -216399188 + LTR64 LTR ERVK 240 252 -306 6926 58 6 67 chr3 11125390 11126406 -216398172 + SVA Other Other 433 1386 0 1564 156 136 161 chr3 11126406 11126692 -216397886 + LTR64 LTR ERVK 252 525 -33 2036 118 3 36 chr3 11126692 11126998 -216397580 + AluSx SINE Alu 1 296 -16 1564 156 136 161 chr3 11126998 11127032 -216397546 + LTR64 LTR ERVK 525 558 0 430 284 44 22 chr3 11127580 11127763 -216396815 - MIR SINE MIR -70 192 6 1482 176 31 0 chr3 11128742 11129031 -216395547 + MER33 DNA MER1_type 27 324 0 742 199 239 2 chr3 11129922 11130190 -216394388 - MER2 DNA MER2_type -6 339 10 211 210 0 48 chr3 11130267 11130329 -216394249 + MIR SINE MIR 92 150 -112 352 368 56 7 chr3 11130490 11130759 -216393819 - L3 LINE CR1 -561 1016 735 604 296 39 17 chr3 11130779 11130958 -216393620 + MER5A DNA MER1_type 1 183 -6 352 305 117 0 chr3 11130993 11131147 -216393431 + MER5A DNA MER1_type 18 189 0 782 229 6 28 chr3 11131171 11131350 -216393228 - MER5A DNA MER1_type -6 183 9 4494 187 45 13 chr3 11131482 11132397 -216392181 - L1MB5 LINE L1 -10 6164 5221 127 57 0 0 chr3 11132397 11132608 -216391970 + AT_rich Low_complexity Low_complexity 1 211 0 207 262 20 27 chr3 11132613 11132762 -216391816 + (TTTAA)n Simple_repeat Simple_repeat 1 148 0 22 80 0 0 chr3 11132768 11132818 -216391760 + AT_rich Low_complexity Low_complexity 1 50 0 2982 15 0 6 chr3 11133499 11133837 -216390741 + L1PA3 LINE L1 5819 6154 -1 24 32 0 0 chr3 11133837 11133868 -216390710 + AT_rich Low_complexity Low_complexity 1 31 0 2857 80 6 0 chr3 11135035 11135396 -216389182 - THE1B LTR MaLR -1 363 1 857 204 104 15 chr3 11135953 11136154 -216388424 + MER20 DNA MER1_type 1 219 0 832 223 97 17 chr3 11136420 11136658 -216387920 + LTR16A1 LTR ERVL 201 457 0 380 183 12 12 chr3 11137462 11137544 -216387034 - MER3 DNA MER1_type -5 204 123 235 259 141 15 chr3 11137544 11137679 -216386899 + MIR3 SINE MIR 53 204 -4 891 257 147 7 chr3 11137844 11138136 -216386442 + LTR16A LTR ERVL 118 450 0 428 301 97 5 chr3 11138231 11138437 -216386141 - MIR SINE MIR -2 260 36 225 192 39 0 chr3 11138757 11138809 -216385769 + (CA)n Simple_repeat Simple_repeat 1 54 0 441 242 258 0 chr3 11138839 11139021 -216385557 - MIR SINE MIR -21 241 13 280 293 13 0 chr3 11139145 11139220 -216385358 + GA-rich Low_complexity Low_complexity 4 79 0 455 264 121 0 chr3 11139416 11139556 -216385022 - MIR SINE MIR -34 228 72 203 304 0 18 chr3 11139655 11139711 -216384867 + MIR3 SINE MIR 15 69 -139 238 237 9 18 chr3 11139815 11139929 -216384649 + (TAG)n Simple_repeat Simple_repeat 2 114 0 286 156 31 0 chr3 11139981 11140045 -216384533 + GA-rich Low_complexity Low_complexity 3 68 0 530 298 0 6 chr3 11140047 11140228 -216384350 + (TAG)n Simple_repeat Simple_repeat 1 180 0 288 306 69 14 chr3 11140311 11140455 -216384123 - MIR SINE MIR -7 255 104 449 309 22 22 chr3 11141033 11141214 -216383364 - MIR SINE MIR -50 212 32 440 327 35 80 chr3 11141425 11141826 -216382752 - L2 LINE L2 0 3272 2890 282 233 14 27 chr3 11142348 11142421 -216382157 - MLT1L LTR MaLR -115 500 429 2023 93 0 0 chr3 11142745 11143004 -216381574 + AluY SINE Alu 42 300 -11 212 209 0 0 chr3 11143019 11143062 -216381516 + L2 LINE L2 3265 3307 -6 231 325 8 48 chr3 11143136 11143262 -216381316 - MLT1K LTR MaLR -13 575 455 442 284 0 0 chr3 11144263 11144379 -216380199 + L2 LINE L2 2932 3047 -266 572 254 89 24 chr3 11144799 11145012 -216379566 + MIR SINE MIR 3 229 -33 209 361 57 0 chr3 11145063 11145185 -216379393 + L2 LINE L2 3139 3267 -5 242 200 0 0 chr3 11146857 11146907 -216377671 + (CA)n Simple_repeat Simple_repeat 1 50 0 293 324 37 9 chr3 11147374 11147482 -216377096 + L2 LINE L2 2937 3047 -225 489 181 0 11 chr3 11147815 11147909 -216376669 - MIR SINE MIR -44 218 126 934 285 90 0 chr3 11148000 11148288 -216376290 + MLT1I LTR MaLR 93 406 -3 185 352 76 52 chr3 11148291 11148745 -216375833 + L2 LINE L2 2370 2843 -471 2026 97 10 28 chr3 11148745 11149035 -216375543 - AluSg SINE Alu -22 288 4 185 352 76 52 chr3 11149035 11149174 -216375404 + L2 LINE L2 2843 2977 -337 198 392 58 0 chr3 11149359 11149479 -216375099 + L2 LINE L2 3146 3272 0 389 269 13 12 chr3 11150186 11150327 -216374251 + MIR SINE MIR 2 147 -61 356 294 7 20 chr3 11150692 11150838 -216373740 + MIR SINE MIR 107 250 -12 768 154 14 1 chr3 11150879 11151027 -216373551 - L1P4 LINE L1 -526 5635 5483 851 247 16 6 chr3 11151027 11151209 -216373369 - MER63A DNA MER1_type -25 185 2 345 361 0 15 chr3 11151212 11151345 -216373233 - MIR SINE MIR -113 149 19 744 260 100 9 chr3 11151472 11151703 -216372875 - MIR SINE MIR -10 252 1 961 272 79 14 chr3 11152148 11152869 -216371709 + L2 LINE L2 2546 3313 0 598 148 61 43 chr3 11153135 11153250 -216371328 + MLT1E LTR MaLR 40 156 -437 635 167 0 18 chr3 11153250 11153364 -216371214 + MLT1E LTR MaLR 482 593 0 972 228 11 0 chr3 11154686 11154870 -216369708 + MER5A DNA MER1_type 3 188 -1 469 274 73 40 chr3 11155080 11155448 -216369130 + MLT1H LTR MaLR 25 376 -33 572 273 75 11 chr3 11156586 11156773 -216367805 - MIR SINE MIR -18 244 46 545 272 126 5 chr3 11156890 11157081 -216367497 - MIR SINE MIR -43 219 6 228 35 0 0 chr3 11157467 11157496 -216367082 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 554 285 40 64 chr3 11157665 11157963 -216366615 + MLT1K LTR MaLR 10 300 -288 1749 175 31 3 chr3 11158596 11158882 -216365696 + AluJo SINE Alu 1 294 -18 767 273 13 4 chr3 11159066 11159293 -216365285 + MIR SINE MIR 34 262 0 497 248 5 74 chr3 11159497 11159590 -216364988 - MIR SINE MIR -21 241 143 2817 170 8 0 chr3 11159590 11160079 -216364499 + L1MB3 LINE L1 5690 6182 -1 497 248 5 74 chr3 11160079 11160204 -216364374 - MIR SINE MIR -119 143 39 251 337 0 0 chr3 11160972 11161058 -216363520 - L2 LINE L2 -35 3237 3152 287 276 23 0 chr3 11161078 11161165 -216363413 + MIR SINE MIR 117 205 -57 545 308 89 0 chr3 11161192 11161406 -216363172 - MIR SINE MIR -26 236 4 741 253 138 39 chr3 11162339 11162852 -216361726 - MLT1G1 LTR MaLR 0 595 8 368 213 33 18 chr3 11162862 11162992 -216361586 - MIR SINE MIR -61 147 13 281 163 0 0 chr3 11162993 11163042 -216361536 + L2 LINE L2 3264 3312 -1 2986 6 0 0 chr3 11163067 11163383 -216361195 - AluYb8 SINE Alu -2 316 1 485 30 167 0 chr3 11163514 11163580 -216360998 + MADE1 DNA Mariner 4 80 0 219 298 53 26 chr3 11163985 11164099 -216360479 + MIR SINE MIR 37 153 -109 521 236 91 55 chr3 11164114 11164157 -216360421 + L1ME3A LINE L1 5257 5297 -865 2700 102 8 0 chr3 11164157 11164518 -216360060 - THE1B LTR MaLR 0 364 1 521 236 91 55 chr3 11164518 11164783 -216359795 + L1ME3A LINE L1 5297 5576 -586 437 270 18 108 chr3 11164787 11165065 -216359513 + L1ME3A LINE L1 5685 5937 -233 2322 105 53 14 chr3 11166203 11166564 -216358014 - THE1C LTR MaLR 0 375 1 206 211 56 70 chr3 11166683 11166754 -216357824 + L3 LINE CR1 1370 1439 -138 491 246 8 24 chr3 11167113 11167239 -216357339 + L2 LINE L2 3190 3313 0 521 258 160 24 chr3 11167970 11168183 -216356395 - MIR SINE MIR -19 243 2 442 222 50 4 chr3 11168855 11168995 -216355583 + MER5A DNA MER1_type 4 178 0 203 327 20 20 chr3 11168996 11169097 -216355481 + MER5A DNA MER1_type 86 186 -3 360 0 0 0 chr3 11169451 11169491 -216355087 + (CA)n Simple_repeat Simple_repeat 2 41 0 779 288 105 27 chr3 11169544 11169778 -216354800 + L2 LINE L2 2496 2710 -604 1733 204 101 40 chr3 11169778 11170253 -216354325 - MLT1D LTR MaLR 0 505 2 779 288 105 27 chr3 11170253 11170456 -216354122 + L2 LINE L2 2710 2967 -347 532 203 17 51 chr3 11171134 11171252 -216353326 - MER81 DNA DNA 0 114 1 887 282 80 26 chr3 11171262 11171736 -216352842 - MER115 DNA AcHobo -4 689 148 231 155 52 52 chr3 11172299 11172357 -216352221 - MER113 DNA MER1_type? -432 89 32 381 290 23 78 chr3 11172386 11172542 -216352036 + MIR SINE MIR 48 190 -72 2375 82 7 0 chr3 11172542 11172835 -216351743 + AluY SINE Alu 1 295 -16 381 290 23 78 chr3 11172835 11172895 -216351683 + MIR SINE MIR 190 252 -10 207 233 33 0 chr3 11172903 11172963 -216351615 + (TAG)n Simple_repeat Simple_repeat 3 64 0 2815 86 6 0 chr3 11173019 11173381 -216351197 + THE1B LTR MaLR 1 364 0 727 253 18 22 chr3 11174444 11174673 -216349905 + MIR SINE MIR 35 262 0 188 311 87 19 chr3 11174871 11174974 -216349604 + L2 LINE L2 3203 3312 -1 2139 25 0 0 chr3 11175888 11176126 -216348452 - AluY SINE Alu -13 298 61 180 354 142 0 chr3 11176221 11176334 -216348244 - MIR SINE MIR -16 246 118 425 249 33 106 chr3 11176577 11176822 -216347756 + L3 LINE CR1 1271 1497 -80 286 392 54 5 chr3 11177113 11177317 -216347261 - MIR SINE MIR -29 233 20 487 282 45 6 chr3 11178190 11178346 -216346232 + MIR SINE MIR 30 191 -71 191 195 218 0 chr3 11179242 11179329 -216345249 - MIR SINE MIR -122 140 35 615 228 98 31 chr3 11179665 11179977 -216344601 - LTR33 LTR ERVL -142 379 5 358 245 66 0 chr3 11180085 11180191 -216344387 + MIR SINE MIR 76 188 -74 1145 224 84 45 chr3 11180620 11181192 -216343386 - MLT1E1 LTR MaLR 0 654 1 255 274 0 60 chr3 11182142 11182226 -216342352 + MIR SINE MIR 36 114 -94 292 170 0 0 chr3 11182411 11182458 -216342120 + MER3 DNA MER1_type 41 87 -122 1238 210 33 16 chr3 11182470 11182775 -216341803 + MER33 DNA MER1_type 15 324 0 622 305 103 42 chr3 11182790 11183307 -216341271 + L2 LINE L2 2755 3301 -12 334 339 26 2 chr3 11183469 11183596 -216340982 + MIR SINE MIR 2 131 -77 264 375 0 0 chr3 11183695 11183783 -216340795 + L2 LINE L2 3185 3272 0 1635 144 56 32 chr3 11184690 11184881 -216339697 + L1MA4 LINE L1 5950 6154 -146 2140 129 0 0 chr3 11184881 11185190 -216339388 + AluSx SINE Alu 1 309 -3 1635 144 56 32 chr3 11185190 11185338 -216339240 + L1MA4 LINE L1 6154 6297 -3 210 272 148 12 chr3 11185357 11185438 -216339140 - L2 LINE L2 -1 3312 3221 300 253 44 82 chr3 11187378 11187536 -216337042 + L1MCa LINE L1 1947 2098 -4328 221 22 87 0 chr3 11187540 11187586 -216336992 + (TA)n Simple_repeat Simple_repeat 2 51 0 363 44 0 0 chr3 11187730 11187775 -216336803 + (CA)n Simple_repeat Simple_repeat 2 46 0 209 291 196 7 chr3 11187989 11188137 -216336441 - MIR3 SINE MIR -7 201 26 * 296 259 59 85 chr3 11188096 11188267 -216336311 + MIR SINE MIR 31 197 -53 211 203 203 13 chr3 11188717 11188796 -216335782 + L2 LINE L2 3158 3251 -21 211 259 290 0 chr3 11189698 11189829 -216334749 - MIR3 SINE MIR -4 204 36 677 266 55 37 chr3 11190045 11190263 -216334315 + MIR SINE MIR 17 238 -24 336 319 106 50 chr3 11190537 11190697 -216333881 - MIR3 SINE MIR -6 202 34 374 285 81 24 chr3 11192859 11192982 -216331596 - MIR3 SINE MIR -67 141 12 189 321 18 0 chr3 11193725 11193781 -216330797 - MIR3 SINE MIR -23 185 129 390 341 101 14 chr3 11194092 11194309 -216330269 + MIR SINE MIR 17 252 -10 401 343 0 0 chr3 11194634 11194736 -216329842 - L2 LINE L2 0 3272 3171 1420 225 78 0 chr3 11195604 11196013 -216328565 + Charlie4a DNA MER1_type 8 448 -60 201 300 17 0 chr3 11196089 11196149 -216328429 + (CA)n Simple_repeat Simple_repeat 2 62 0 380 289 38 44 chr3 11196149 11196308 -216328270 + MIR SINE MIR 5 162 -100 370 296 9 26 chr3 11196650 11196765 -216327813 - L2 LINE L2 -171 3101 2989 597 274 16 12 chr3 11197941 11198124 -216326454 - MIR3 SINE MIR -23 185 6 413 319 48 16 chr3 11198127 11198315 -216326263 - L3 LINE CR1 -72 1505 1312 268 149 106 53 chr3 11198990 11199084 -216325494 + L1ME2 LINE L1 5148 5246 -900 217 245 0 0 chr3 11199199 11199248 -216325330 + (TATATG)n Simple_repeat Simple_repeat 2 50 0 213 65 0 0 chr3 11199257 11199288 -216325290 + (CATA)n Simple_repeat Simple_repeat 2 32 0 3085 256 40 9 chr3 11199300 11200164 -216324414 + L1ME2 LINE L1 5255 6145 -19 190 222 0 0 chr3 11202105 11202141 -216322437 - L2 LINE L2 -21 3251 3216 328 317 92 0 chr3 11202165 11202285 -216322293 - MIR SINE MIR -112 150 20 1776 146 78 7 chr3 11202317 11202626 -216321952 + MER46B DNA MER2_type 31 236 0 936 244 69 19 chr3 11202657 11202977 -216321601 - MER113 DNA MER1_type? 0 521 186 403 279 34 78 chr3 11203128 11203307 -216321271 - MIR SINE MIR -46 216 46 628 187 32 16 chr3 11204198 11204321 -216320257 - L2 LINE L2 -13 3300 3176 210 71 0 0 chr3 11204904 11204932 -216319646 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 210 105 0 0 chr3 11205070 11205108 -216319470 + (TG)n Simple_repeat Simple_repeat 2 39 0 33 0 0 0 chr3 11207958 11207991 -216316587 + AT_rich Low_complexity Low_complexity 1 33 0 249 182 0 0 chr3 11208495 11208550 -216316028 + (CA)n Simple_repeat Simple_repeat 2 56 0 225 32 0 0 chr3 11209252 11209283 -216315295 - L1MA3 LINE L1 -1 6304 6274 180 0 0 0 chr3 11209363 11209383 -216315195 + (A)n Simple_repeat Simple_repeat 1 20 0 4265 115 78 29 chr3 11209766 11209844 -216314734 - L1MA9 LINE L1 0 6312 6239 186 43 0 0 chr3 11209844 11209867 -216314711 + (TTG)n Simple_repeat Simple_repeat 1 23 0 1643 175 4 0 chr3 11209867 11210147 -216314431 - AluJo SINE Alu -31 281 1 4265 115 78 29 chr3 11210147 11210561 -216314017 - L1MA9 LINE L1 -73 6239 5767 249 119 0 0 chr3 11210561 11210603 -216313975 + (TG)n Simple_repeat Simple_repeat 1 42 0 4265 115 78 29 chr3 11210603 11210862 -216313716 - L1MA9 LINE L1 -545 5767 5522 681 254 6 6 chr3 11210942 11211119 -216313459 - MER5B DNA MER1_type -1 177 1 313 292 52 0 chr3 11211131 11211227 -216313351 + MER5A DNA MER1_type 5 105 -84 195 284 27 68 chr3 11211465 11211539 -216313039 + MIR SINE MIR 5 75 -187 201 281 129 76 chr3 11211644 11211712 -216312866 + MIR SINE MIR 83 146 -116 853 183 56 6 chr3 11211712 11211892 -216312686 - MER5A DNA MER1_type 0 189 1 201 281 129 76 chr3 11211892 11211994 -216312584 + MIR SINE MIR 146 262 0 778 208 62 6 chr3 11212195 11212373 -216312205 + MIR SINE MIR 74 261 -1 233 264 7 81 chr3 11212488 11212636 -216311942 + MIR SINE MIR 92 228 -34 1079 263 80 65 chr3 11212928 11213376 -216311202 - LTR37B LTR ERV1 -4 464 10 1414 163 0 27 chr3 11213393 11213650 -216310928 - AluJo SINE Alu -54 258 9 186 338 0 27 chr3 11213783 11213857 -216310721 - MIR SINE MIR -118 90 19 305 332 73 44 chr3 11215021 11215226 -216309352 - MIR SINE MIR -20 242 32 268 336 17 42 chr3 11215422 11215541 -216309037 - MIR3 SINE MIR -50 158 43 183 42 0 0 chr3 11215555 11215579 -216308999 + (CTCTG)n Simple_repeat Simple_repeat 4 27 0 198 331 121 0 chr3 11216397 11216521 -216308057 + L2 LINE L2 2905 3043 -229 359 236 111 76 chr3 11216647 11216791 -216307787 - MIR SINE MIR -105 157 9 245 248 220 46 chr3 11216860 11216969 -216307609 + L2 LINE L2 3139 3266 -6 338 293 229 7 chr3 11217122 11217262 -216307316 - MER5A DNA MER1_type -6 183 13 229 250 83 0 chr3 11218572 11218656 -216305922 + MER91C DNA MER1_type 50 140 0 342 296 167 6 chr3 11218841 11219003 -216305575 - MIR SINE MIR -71 191 4 243 323 0 0 chr3 11219093 11219158 -216305420 - L3 LINE CR1 -22 1555 1491 197 325 267 8 chr3 11219210 11219330 -216305248 - L3 LINE CR1 -197 1380 1230 518 226 43 24 chr3 11219392 11219556 -216305022 - L1MEc LINE L1 -6210 186 20 30 0 0 0 chr3 11220464 11220494 -216304084 + AT_rich Low_complexity Low_complexity 1 30 0 304 253 40 30 chr3 11220658 11220757 -216303821 - MER103 DNA DNA -59 107 8 1109 176 23 19 chr3 11220969 11221185 -216303393 - MER20 DNA MER1_type -1 218 2 1145 210 5 0 chr3 11221813 11222018 -216302560 - MER58A DNA MER1_type 0 224 19 252 328 70 23 chr3 11222725 11222853 -216301725 + MIR3 SINE MIR 52 185 -23 184 238 89 59 chr3 11223145 11223246 -216301332 - MIR SINE MIR -72 136 33 * 290 348 63 13 chr3 11223193 11223351 -216301227 + MER5B DNA MER1_type 13 178 0 274 307 13 0 chr3 11223416 11223491 -216301087 - MER5A DNA MER1_type -88 101 26 270 284 60 82 chr3 11223618 11223862 -216300716 + L2 LINE L2 2789 3032 -240 185 364 13 0 chr3 11223945 11224022 -216300556 + L2 LINE L2 3207 3284 -29 268 289 29 19 chr3 11224055 11224159 -216300419 + MER5C DNA MER1_type 1 105 -219 497 288 6 34 chr3 11224358 11224574 -216300004 + G-rich Low_complexity Low_complexity 1 209 0 5725 87 20 26 chr3 11224633 11225950 -216298628 + SVA Other Other 1 868 -520 6600 64 9 63 chr3 11225997 11227364 -216297214 + SVA Other Other 433 1386 0 1079 171 243 59 chr3 11227364 11227650 -216296928 + LTR64 LTR ERVK 179 532 -26 1915 118 3 36 chr3 11227650 11227956 -216296622 + AluSx SINE Alu 1 296 -16 1079 171 243 59 chr3 11227956 11227990 -216296588 + LTR64 LTR ERVK 532 558 0 509 262 49 27 chr3 11228537 11228720 -216295858 - MIR SINE MIR -70 192 6 1477 176 31 0 chr3 11229699 11229988 -216294590 + MER33 DNA MER1_type 27 324 0 1542 109 5 0 chr3 11230219 11230439 -216294139 - AluSg SINE Alu -89 221 1 399 21 0 0 chr3 11232208 11232256 -216292322 + (TTA)n Simple_repeat Simple_repeat 2 49 0 1675 44 5 0 chr3 11232257 11232461 -216292117 - L1PA5 LINE L1 -17 6137 5933 1142 44 0 0 chr3 11232461 11232597 -216291981 + L1PA5 LINE L1 5806 5941 -213 801 268 20 45 chr3 11232742 11232988 -216291590 - MIR SINE MIR -11 251 12 240 269 65 11 chr3 11233165 11233258 -216291320 - MIR SINE MIR -48 214 117 508 281 70 5 chr3 11233274 11233459 -216291119 - MER117 DNA MER1_type 0 197 1 2307 81 3 0 chr3 11233684 11233980 -216290598 + AluSq SINE Alu 1 297 -16 251 122 0 0 chr3 11234240 11234281 -216290297 + MER117 DNA MER1_type 50 90 -107 1664 144 47 23 chr3 11234419 11234718 -216289860 - AluSx SINE Alu -6 306 1 1016 209 62 0 chr3 11235121 11235346 -216289232 + MIR SINE MIR 21 259 -3 887 85 8 0 chr3 11235795 11235925 -216288653 + (TAGA)n Simple_repeat Simple_repeat 3 133 0 1258 180 117 8 chr3 11235925 11236181 -216288397 - AluJo SINE Alu -17 285 2 420 210 100 0 chr3 11236194 11236294 -216288284 + MER5A DNA MER1_type 72 181 -8 416 303 66 20 chr3 11236618 11236770 -216287808 - MIR3 SINE MIR -34 174 16 400 281 42 62 chr3 11237998 11238190 -216286388 + MER5A DNA MER1_type 1 188 -1 1839 113 25 21 chr3 11238270 11238576 -216286002 + AluSg SINE Alu 1 307 0 1257 104 95 54 chr3 11238599 11238820 -216285758 + MER30 DNA MER1_type 1 230 0 391 265 102 18 chr3 11238843 11239009 -216285569 - MIR SINE MIR -76 186 7 346 334 0 6 chr3 11239917 11239933 -216284645 - L1ME3 LINE L1 -1 6163 6148 2029 156 3 44 chr3 11239933 11240027 -216284551 - MER7A DNA MER2_type -2692 346 250 2206 68 24 3 chr3 11240027 11240320 -216284258 + AluY SINE Alu 1 299 -12 2029 156 3 44 chr3 11240320 11240585 -216283993 - MER7A DNA MER2_type -2788 250 4 346 334 0 6 chr3 11240585 11240699 -216283879 - L1ME3 LINE L1 -16 6148 6038 454 333 155 34 chr3 11241429 11241841 -216282737 - L2 LINE L2 0 3272 2811 2649 129 39 5 chr3 11242056 11242468 -216282110 - MSTC LTR MaLR 0 428 3 441 274 108 21 chr3 11243773 11243959 -216280619 - MIR SINE MIR -11 251 50 301 263 0 26 chr3 11244780 11244856 -216279722 + MER103 DNA DNA 24 97 -69 690 204 99 0 chr3 11244866 11245018 -216279560 - MER5A DNA MER1_type -22 167 1 200 83 28 0 chr3 11245140 11245154 -216279424 + (TATG)n Simple_repeat Simple_repeat 4 16 -24 2014 68 0 0 chr3 11245154 11245404 -216279174 - AluY SINE Alu -26 285 36 200 83 28 0 chr3 11245404 11245425 -216279153 + (TATG)n Simple_repeat Simple_repeat 16 40 0 759 163 0 7 chr3 11246456 11246591 -216277987 - FRAM SINE Alu -8 168 35 278 277 11 21 chr3 11246591 11246685 -216277893 - MIR SINE MIR -65 197 105 216 0 0 0 chr3 11248133 11248157 -216276421 + (T)n Simple_repeat Simple_repeat 1 24 0 1158 199 4 13 chr3 11248189 11248415 -216276163 - MER58A DNA MER1_type 0 224 1 383 285 69 49 chr3 11248531 11248675 -216275903 - MIR SINE MIR -12 250 104 363 213 27 0 chr3 11248676 11248751 -216275827 - MER112 DNA MER1_type -6 254 178 213 39 0 0 chr3 11248820 11248846 -216275732 + (TG)n Simple_repeat Simple_repeat 2 27 0 194 361 36 12 chr3 11248911 11248994 -216275584 - MIR SINE MIR -95 113 29 266 296 112 24 chr3 11249428 11249553 -216275025 - MIR3 SINE MIR -70 138 3 705 286 143 36 chr3 11250136 11250660 -216273918 - MLT1G LTR MaLR 0 590 11 749 147 92 65 chr3 11251257 11251441 -216273137 + MER5A DNA MER1_type 1 189 0 226 350 42 33 chr3 11251652 11251772 -216272806 + MIR3 SINE MIR 42 162 -46 651 235 136 0 chr3 11251818 11251980 -216272598 - MIR SINE MIR -65 197 14 845 154 0 0 chr3 11252539 11252669 -216271909 + AluJo SINE Alu 6 135 -177 1081 210 147 52 chr3 11253629 11253977 -216270601 - MER58D DNA MER1_type -3 383 3 437 329 0 22 chr3 11254005 11254142 -216270436 + MIR SINE MIR 20 153 -109 309 288 34 68 chr3 11254878 11255024 -216269554 + MIR SINE MIR 52 192 -70 667 233 71 60 chr3 11255048 11255314 -216269264 + L2 LINE L2 3028 3296 -17 428 359 114 19 chr3 11255510 11255825 -216268753 - L2 LINE L2 -14 3258 2914 264 359 55 7 chr3 11255825 11255970 -216268608 - L2 LINE L2 0 3272 3121 3371 164 84 0 chr3 11256047 11256681 -216267897 + L1MC3 LINE L1 7080 7766 -19 1701 166 0 4 chr3 11256696 11256974 -216267604 - AluJo SINE Alu -27 285 9 31 0 0 0 chr3 11256982 11257013 -216267565 + AT_rich Low_complexity Low_complexity 1 31 0 2835 176 30 23 chr3 11257017 11257626 -216266952 + Charlie1 DNA MER1_type 2149 2761 0 634 194 2 70 chr3 11257637 11257810 -216266768 - MIR SINE MIR -64 144 35 298 271 85 29 chr3 11258185 11258319 -216266259 + MIR SINE MIR 101 243 -19 517 275 77 47 chr3 11258328 11258561 -216266017 + MIR SINE MIR 23 262 0 246 169 0 51 chr3 11258570 11258629 -216265949 + (TATAA)n Simple_repeat Simple_repeat 2 57 0 242 353 139 0 chr3 11258729 11258851 -216265727 - L3 LINE CR1 -114 1463 1325 321 307 31 55 chr3 11258980 11259143 -216265435 - MIR SINE MIR 0 262 104 791 293 4 25 chr3 11259155 11259394 -216265184 - MIR SINE MIR -21 241 8 21 57 0 0 chr3 11260986 11261021 -216263557 + AT_rich Low_complexity Low_complexity 1 35 0 445 317 18 115 chr3 11261824 11262125 -216262453 - L2 LINE L2 0 3272 3016 1616 157 57 0 chr3 11262125 11262406 -216262172 + AluJb SINE Alu 2 298 -14 445 317 18 115 chr3 11262406 11262495 -216262083 - L2 LINE L2 -256 3016 2920 180 103 35 0 chr3 11262522 11262551 -216262027 - L2 LINE L2 -52 3220 3191 4334 225 43 9 chr3 11264246 11265300 -216259278 - L1MC4 LINE L1 -151 7891 6803 998 109 48 0 chr3 11265665 11265830 -216258748 - L1MA8 LINE L1 -6 6285 6113 787 241 50 146 chr3 11266227 11266763 -216257815 - MLT1K LTR MaLR -2 586 102 563 301 7 7 chr3 11267862 11268008 -216256570 - L2 LINE L2 0 3313 3168 655 273 121 4 chr3 11268146 11268377 -216256201 + MIR SINE MIR 2 259 -3 234 81 0 0 chr3 11268608 11268645 -216255933 + (CA)n Simple_repeat Simple_repeat 2 38 0 252 327 27 36 chr3 11268976 11269086 -216255492 - MER5A DNA MER1_type -7 182 74 343 338 34 14 chr3 11269093 11269241 -216255337 - MIR3 SINE MIR -24 184 34 1131 208 0 0 chr3 11269456 11269653 -216254925 - MER58A DNA MER1_type 0 224 28 538 125 0 62 chr3 11270022 11270118 -216254460 + FRAM SINE Alu 72 161 -15 1544 186 40 3 chr3 11270124 11270420 -216254158 + AluJb SINE Alu 6 312 0 2225 116 0 0 chr3 11272737 11273048 -216251530 + AluSx SINE Alu 1 311 -1 826 174 8 0 chr3 11273550 11273682 -216250896 + FLAM_A SINE Alu 1 133 0 215 184 214 61 chr3 11273789 11273887 -216250691 - MIR SINE MIR -92 170 58 394 316 30 8 chr3 11273929 11274062 -216250516 - MIR3 SINE MIR -66 142 7 1410 257 78 36 chr3 11274877 11275586 -216248992 + L2 LINE L2 2554 3313 0 2482 177 47 40 chr3 11275734 11276288 -216248290 + MER74A LTR ERVL 1 558 0 473 276 0 0 chr3 11276344 11276449 -216248129 + L2 LINE L2 3168 3272 0 216 250 58 0 chr3 11276452 11276504 -216248074 - L2 LINE L2 -20 3293 3239 467 350 35 15 chr3 11276511 11276708 -216247870 + MIR SINE MIR 34 234 -28 378 242 0 32 chr3 11276770 11276865 -216247713 - MIR SINE MIR -109 153 62 254 269 158 41 chr3 11277181 11277352 -216247226 + Charlie8 DNA MER1_type 67 257 -2160 238 160 40 0 chr3 11277467 11277517 -216247061 + HSMAR1 DNA Mariner 1236 1287 0 592 194 8 0 chr3 11277528 11277654 -216246924 - L1 LINE L1 -1514 4632 4502 334 267 117 39 chr3 11277819 11277999 -216246579 - L2 LINE L2 -112 3201 3008 716 245 32 0 chr3 11278055 11278210 -216246368 + MLT1H LTR MaLR 2 161 -388 2014 201 61 38 chr3 11278211 11278798 -216245780 - L1M4 LINE L1 -1243 4903 4303 963 264 48 29 chr3 11278815 11279194 -216245384 - L1ME LINE L1 -5632 438 53 3174 82 59 0 chr3 11279198 11279622 -216244956 - MLT2A2 LTR ERVL -4 449 1 2049 139 39 22 chr3 11279671 11280031 -216244547 + L1MB4 LINE L1 5475 5840 -340 1608 191 42 35 chr3 11280031 11280408 -216244170 - MLT1B LTR MaLR -7 383 4 1684 176 17 37 chr3 11280408 11280761 -216243817 + L1MB4 LINE L1 5834 6179 -1 264 341 8 56 chr3 11281556 11281682 -216242896 + MIR SINE MIR 53 172 -90 198 214 24 0 chr3 11281660 11281702 -216242876 + L2 LINE L2 3257 3299 -14 * 315 315 46 0 chr3 11281827 11281935 -216242643 - MIR SINE MIR -62 200 88 186 147 0 29 chr3 11282062 11282096 -216242482 + MIR SINE MIR 117 149 -113 319 303 0 10 chr3 11282213 11282312 -216242266 + L2 LINE L2 3171 3268 -4 386 286 71 0 chr3 11283220 11283346 -216241232 + MIR SINE MIR 51 185 -77 267 333 75 25 chr3 11283540 11283699 -216240879 + MIR SINE MIR 45 211 -51 442 220 121 40 chr3 11284066 11284239 -216240339 - MIR SINE MIR -29 233 47 1248 229 111 60 chr3 11284389 11284822 -216239756 - MER77 LTR ERV1 -7 598 144 347 254 109 57 chr3 11284932 11285080 -216239498 + L1ME4a LINE L1 5897 6036 -85 253 0 0 0 chr3 11285080 11285108 -216239470 + (TTTA)n Simple_repeat Simple_repeat 1 176 0 1879 157 4 0 chr3 11285108 11285389 -216239189 - AluJo SINE Alu -31 281 1 347 254 109 57 chr3 11285389 11285431 -216239147 + L1ME4a LINE L1 6035 6099 -22 483 304 83 12 chr3 11286450 11286618 -216237960 - MIR SINE MIR -62 200 21 2361 105 36 28 chr3 11287112 11287473 -216237105 + THE1B LTR MaLR 1 364 0 241 157 39 20 chr3 11287525 11287576 -216237002 + GA-rich Low_complexity Low_complexity 1 52 0 1494 313 148 19 chr3 11287988 11288947 -216235631 + L3 LINE CR1 418 1500 -77 335 224 82 12 chr3 11289752 11289837 -216234741 - MIR SINE MIR -76 132 42 1236 202 0 13 chr3 11290092 11290325 -216234253 + Tigger7 DNA MER2_type 1 230 -2257 2241 124 0 0 chr3 11290349 11290648 -216233930 + AluSx SINE Alu 1 299 -13 623 158 0 0 chr3 11290674 11290769 -216233809 + Tigger7 DNA MER2_type 2393 2487 0 431 217 63 72 chr3 11290969 11291176 -216233402 + L1MC5 LINE L1 7719 7923 -38 731 241 92 57 chr3 11291886 11292034 -216232544 - MER113 DNA MER1_type? -25 496 355 1664 187 42 3 chr3 11292034 11292317 -216232261 + AluJb SINE Alu 1 294 -18 731 241 92 57 chr3 11292317 11292484 -216232094 - MER113 DNA MER1_type? -166 355 170 348 318 30 0 chr3 11292658 11292790 -216231788 - MER69 DNA AcHobo -2297 229 94 780 213 0 3 chr3 11292912 11293257 -216231321 + (CAT)n Simple_repeat Simple_repeat 1 344 0 679 305 64 16 chr3 11293259 11293508 -216231070 - MIR SINE MIR 0 262 2 1853 182 0 3 chr3 11294071 11294368 -216230210 + AluSx SINE Alu 1 296 -16 347 383 0 0 chr3 11294428 11294556 -216230022 + MIR SINE MIR 16 143 -65 192 77 0 0 chr3 11294911 11294937 -216229641 + (TG)n Simple_repeat Simple_repeat 1 26 0 188 143 0 0 chr3 11295009 11295044 -216229534 - MIR SINE MIR -126 136 102 2545 88 11 6 chr3 11295136 11295488 -216229090 + THE1A LTR MaLR 2 355 0 4841 159 37 4 chr3 11296027 11296864 -216227714 - MER6 DNA MER2_type 0 865 1 542 245 155 101 chr3 11296864 11297399 -216227179 + L1ME4a LINE L1 5555 6118 -3 200 260 178 14 chr3 11297527 11297600 -216226978 + MIR SINE MIR 59 143 -119 1032 88 7 0 chr3 11297771 11297919 -216226659 - L1PA6 LINE L1 -1 6153 6005 522 303 131 17 chr3 11298128 11298488 -216226090 - LTR33 LTR ERVL -4 517 117 1435 196 55 35 chr3 11298493 11298839 -216225739 - MLT1A1 LTR MaLR -3 362 10 409 176 130 30 chr3 11298845 11298976 -216225602 - LTR33 LTR ERVL -372 149 6 357 298 76 41 chr3 11300289 11300671 -216223907 + MLT1K LTR MaLR 156 580 -8 353 299 60 9 chr3 11301198 11301377 -216223201 + MIR SINE MIR 32 221 -41 1516 188 78 20 chr3 11301388 11301733 -216222845 - MLT1A1 LTR MaLR 0 365 1 183 411 6 24 chr3 11301855 11302023 -216222555 + MIR SINE MIR 28 192 -70 1025 150 20 0 chr3 11302176 11302329 -216222249 + FRAM SINE Alu 1 153 -23 467 229 9 67 chr3 11302335 11302368 -216222210 - MIR SINE MIR 0 262 229 2321 120 28 11 chr3 11302368 11302726 -216221852 + THE1B LTR MaLR 1 364 0 467 229 9 67 chr3 11302726 11302865 -216221713 - MIR SINE MIR -33 229 102 610 164 66 0 chr3 11303158 11303280 -216221298 - THE1C LTR MaLR -245 130 1 406 197 0 0 chr3 11303315 11303381 -216221197 - AluJ/FRAM SINE Alu -15 297 232 824 264 15 5 chr3 11303697 11303898 -216220680 + MIR SINE MIR 60 262 0 41090 33 25 2 chr3 11303934 11309944 -216214634 + L1PA3 LINE L1 1 6154 -1 309 250 30 20 chr3 11310207 11310307 -216214271 - MER20B DNA MER1_type -639 144 44 1016 216 116 9 chr3 11311528 11311844 -216212734 + MLT1G3 LTR MaLR 182 571 -19 243 325 35 98 chr3 11312445 11312546 -216212032 + L2 LINE L2 2702 2785 -529 2380 124 22 28 chr3 11312546 11312910 -216211668 + THE1B LTR MaLR 3 364 0 243 325 35 98 chr3 11312910 11313011 -216211567 + L2 LINE L2 2785 2891 -423 394 266 127 3 chr3 11313924 11314092 -216210486 + MIR SINE MIR 3 192 -63 575 194 67 37 chr3 11314733 11314867 -216209711 + MIR3 SINE MIR 5 142 -66 180 250 0 0 chr3 11315030 11315070 -216209508 + MIR3 SINE MIR 151 190 -18 205 345 24 0 chr3 11316279 11316363 -216208215 - L2 LINE L2 -24 3248 3163 232 286 19 48 chr3 11316403 11316508 -216208070 - L2 LINE L2 -4 3309 3208 681 270 34 0 chr3 11317013 11317191 -216207387 - MER58A DNA MER1_type -11 213 30 681 240 191 34 chr3 11317236 11317624 -216206954 + L2 LINE L2 2863 3311 -2 218 256 13 0 chr3 11317630 11317708 -216206870 + GA-rich Low_complexity Low_complexity 3 81 0 508 246 78 7 chr3 11318088 11318230 -216206348 + MIR SINE MIR 1 152 -110 1777 230 62 45 chr3 11318841 11319393 -216205185 + MLT1K LTR MaLR 13 573 -15 241 286 223 0 chr3 11319944 11320056 -216204522 - L2 LINE L2 -2 3311 3175 269 225 56 56 chr3 11320285 11320374 -216204204 + MIR3 SINE MIR 104 192 -16 1219 242 62 47 chr3 11320872 11321261 -216203317 + MLT1C LTR MaLR 6 404 -63 2412 75 0 13 chr3 11321261 11321567 -216203011 - AluY SINE Alu -9 302 1 1219 242 62 47 chr3 11321567 11321628 -216202950 + MLT1C LTR MaLR 404 463 -4 435 298 33 8 chr3 11321853 11321974 -216202604 - MIR3 SINE MIR -6 202 79 230 213 62 50 chr3 11323391 11323471 -216201107 - L2 LINE L2 -1 3271 3191 804 301 4 9 chr3 11323492 11323718 -216200860 + MIR SINE MIR 13 237 -25 185 108 27 0 chr3 11323738 11323775 -216200803 + (CACCAT)n Simple_repeat Simple_repeat 6 43 0 247 322 26 52 chr3 11323925 11324040 -216200538 - L2 LINE L2 -213 3059 2948 203 264 69 42 chr3 11324276 11324348 -216200230 - MIR3 SINE MIR -23 185 112 564 231 50 0 chr3 11324916 11325037 -216199541 - MIR3 SINE MIR -12 196 70 508 391 29 0 chr3 11325314 11325521 -216199057 + MIR SINE MIR 19 231 -31 2263 82 6 57 chr3 11325551 11325868 -216198710 - AluSq SINE Alu -12 301 1 241 264 191 18 chr3 11326505 11326615 -216197963 - MIR SINE MIR -119 143 15 920 228 73 0 chr3 11327280 11327486 -216197092 - MER58A DNA MER1_type -3 221 1 412 296 138 13 chr3 11327496 11327648 -216196930 - MER5A DNA MER1_type -3 186 5 1266 214 177 21 chr3 11328605 11328989 -216195589 + MLT1H1 LTR MaLR 95 538 -17 832 253 92 4 chr3 11328990 11329239 -216195339 + LTR16B LTR ERVL 194 464 0 648 203 16 31 chr3 11329250 11329378 -216195200 - MIR SINE MIR -117 145 20 303 143 0 18 chr3 11329386 11329442 -216195136 + Tigger5 DNA MER2_type 1 55 -2268 687 299 79 0 chr3 11329808 11329985 -216194593 - MIR3 SINE MIR -10 198 8 198 288 86 61 chr3 11330118 11330281 -216194297 + L2 LINE L2 2872 3038 -234 * 232 340 108 44 chr3 11330273 11330523 -216194055 + L2 LINE L2 2624 2889 -425 306 250 12 12 chr3 11330783 11330863 -216193715 + L2 LINE L2 3193 3272 0 189 195 0 0 chr3 11330921 11330962 -216193616 + (TGAA)n Simple_repeat Simple_repeat 4 44 0 181 241 56 19 chr3 11331065 11331119 -216193459 + L2 LINE L2 3197 3252 -20 240 268 56 14 chr3 11331625 11331696 -216192882 - L2 LINE L2 -8 3264 3191 1747 284 99 33 chr3 11331838 11332805 -216191773 + L1M4 LINE L1 3879 4952 -1194 955 233 78 91 chr3 11332805 11333333 -216191245 + LTR33 LTR ERVL 1 521 0 1747 284 99 33 chr3 11333333 11333653 -216190925 + L1M4 LINE L1 4952 5250 -896 1765 158 0 46 chr3 11333723 11334046 -216190532 + AluSx SINE Alu 1 308 -4 227 111 0 22 chr3 11334215 11334260 -216190318 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 230 271 73 42 chr3 11334427 11334523 -216190055 + MIR SINE MIR 56 154 -108 221 248 50 99 chr3 11335209 11335330 -216189248 + MIR SINE MIR 16 130 -78 2349 89 16 0 chr3 11336077 11336381 -216188197 + AluY SINE Alu 1 309 -2 471 221 131 8 chr3 11336577 11336699 -216187879 + MER5A DNA MER1_type 9 145 -44 397 250 12 0 chr3 11337108 11337192 -216187386 + L2 LINE L2 3186 3270 -2 689 235 0 15 chr3 11337266 11337402 -216187176 - MLT1A1 LTR MaLR 0 365 232 2035 130 2 60 chr3 11337404 11337804 -216186774 - MER4B LTR ERV1 0 610 234 1595 256 156 29 chr3 11339111 11339972 -216184606 - L1M4 LINE L1 -880 5266 4297 1302 234 11 34 chr3 11340000 11340354 -216184224 - L1ME1 LINE L1 -3 6163 5818 2071 109 0 3 chr3 11340358 11340675 -216183903 - AluSc SINE Alu 0 316 1 12682 199 37 38 chr3 11340828 11343282 -216181296 - L1MB7 LINE L1 0 6995 4540 1850 135 7 3 chr3 11343282 11343603 -216180975 - AluSx SINE Alu 0 322 1 12682 199 37 38 chr3 11343603 11345413 -216179165 - L1MB7 LINE L1 -2455 4540 2761 1733 172 28 8 chr3 11345413 11345773 -216178805 - L1MA6 LINE L1 0 6300 5934 12682 199 37 38 chr3 11345773 11345863 -216178715 - L1MB7 LINE L1 -4234 2761 2672 3692 262 61 18 chr3 11345865 11346979 -216177599 - L1MB7 LINE L1 -5687 1172 11 438 234 177 40 chr3 11347859 11348034 -216176544 + MIR SINE MIR 47 245 -17 426 296 48 0 chr3 11348037 11348162 -216176416 - L2 LINE L2 -1 3312 3182 378 171 0 0 chr3 11348185 11348255 -216176323 + (TATATG)n Simple_repeat Simple_repeat 3 72 0 557 267 18 120 chr3 11348273 11348606 -216175972 - L2 LINE L2 -129 3184 2886 1816 145 0 26 chr3 11348611 11348922 -216175656 + AluJo SINE Alu 1 303 -9 340 343 39 34 chr3 11348924 11349128 -216175450 + L1MC4 LINE L1 7821 8025 -17 522 275 225 39 chr3 11349137 11349595 -216174983 - L2 LINE L2 -399 2915 2373 902 198 0 23 chr3 11350582 11350759 -216173819 - MIR SINE MIR -27 235 63 1759 148 16 30 chr3 11351307 11351610 -216172968 - AluJb SINE Alu -13 299 1 596 172 101 65 chr3 11351610 11351779 -216172799 - MLT1B LTR MaLR -215 175 1 300 262 24 0 chr3 11352481 11352565 -216172013 + MER117 DNA MER1_type 112 197 0 24 0 0 0 chr3 11354133 11354157 -216170421 + AT_rich Low_complexity Low_complexity 1 24 0 210 150 0 0 chr3 11356601 11356641 -216167937 + (TTCA)n Simple_repeat Simple_repeat 4 43 0 600 293 105 39 chr3 11356643 11356977 -216167601 - L2 LINE L2 0 3313 2958 444 256 39 32 chr3 11357719 11357801 -216166777 + MER103 DNA DNA 2 87 -79 1970 135 40 6 chr3 11357801 11358127 -216166451 + MER1B DNA MER1_type 1 337 0 444 256 39 32 chr3 11358127 11358200 -216166378 + MER103 DNA DNA 87 158 -8 268 273 30 0 chr3 11359694 11359760 -216164818 - MIR SINE MIR -126 136 69 727 226 34 34 chr3 11360165 11360342 -216164236 + MIR SINE MIR 22 198 -64 224 313 12 0 chr3 11360344 11360424 -216164154 + MIR SINE MIR 169 249 -13 748 241 29 0 chr3 11360606 11360780 -216163798 - MSTD LTR MaLR -212 184 6 264 280 64 88 chr3 11360877 11361002 -216163576 - L2 LINE L2 -2 3270 3149 431 291 81 63 chr3 11361165 11361517 -216163061 - MLT1K LTR MaLR -8 580 180 400 210 0 0 chr3 11361624 11361705 -216162873 + MLT1H LTR MaLR 469 549 0 271 262 0 0 chr3 11362739 11362800 -216161778 - MER20 DNA MER1_type -5 214 154 1471 169 75 52 chr3 11362834 11363183 -216161395 + MLT1B LTR MaLR 34 390 0 548 171 55 75 chr3 11363188 11363334 -216161244 - MER20 DNA MER1_type -76 143 1 255 200 143 14 chr3 11363346 11363416 -216161162 + L2 LINE L2 3230 3308 -5 204 40 0 0 chr3 11364657 11364682 -216159896 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 339 138 0 35 chr3 11365317 11365375 -216159203 + Alu SINE Alu 1 56 -246 212 349 23 23 chr3 11365380 11365466 -216159112 + L2 LINE L2 3186 3271 -1 430 320 110 29 chr3 11365534 11365815 -216158763 - MER102b DNA MER1_type -4 337 34 756 125 35 49 chr3 11365871 11366015 -216158563 + MER20 DNA MER1_type 16 157 -62 219 302 60 17 chr3 11366534 11366650 -216157928 - L2 LINE L2 -16 3256 3136 332 315 54 23 chr3 11367212 11367342 -216157236 - MIR SINE MIR -32 230 97 354 214 67 34 chr3 11367388 11367477 -216157101 - L1MC4 LINE L1 -1339 6703 6612 303 286 22 22 chr3 11367637 11367728 -216156850 + L1MC4 LINE L1 6612 6702 -1340 231 185 111 0 chr3 11367741 11367822 -216156756 + L1MC4 LINE L1 6614 6703 -1339 310 264 7 7 chr3 11367825 11367965 -216156613 + (TA)n Simple_repeat Simple_repeat 2 141 0 1718 156 30 3 chr3 11367967 11368262 -216156316 - AluJb SINE Alu -9 303 1 185 259 69 35 chr3 11368270 11368328 -216156250 - L2 LINE L2 -17 3296 3237 851 282 58 47 chr3 11368340 11368519 -216156059 - LTR16A LTR ERVL 0 450 274 4636 92 5 3 chr3 11368519 11369161 -216155417 - L1PA12 LINE L1 -1 6167 5525 851 282 58 47 chr3 11369161 11369346 -216155232 - LTR16A LTR ERVL -176 274 82 273 200 0 80 chr3 11369363 11369438 -216155140 - L2 LINE L2 -86 3227 3159 414 113 0 16 chr3 11369863 11369925 -216154653 - MLT1L LTR MaLR -8 607 547 680 291 66 21 chr3 11370793 11371082 -216153496 + L1MC4a LINE L1 5666 5967 -1841 2378 138 8 22 chr3 11371923 11372152 -216152426 - MLT1A1 LTR MaLR 0 365 141 2022 146 152 19 chr3 11372152 11372528 -216152050 - MSTB LTR MaLR 0 426 1 2378 138 8 22 chr3 11372528 11372668 -216151910 - MLT1A1 LTR MaLR -224 141 1 422 248 17 8 chr3 11372833 11372950 -216151628 - MER103 DNA DNA -29 137 20 399 261 116 36 chr3 11373035 11373173 -216151405 - MIR3 SINE MIR -49 159 11 2968 119 111 15 chr3 11373435 11373913 -216150665 - MER1A DNA MER1_type 0 527 4 245 323 30 0 chr3 11374109 11374208 -216150370 + MER103 DNA DNA 63 164 -2 199 296 43 24 chr3 11374634 11374738 -216149840 - MER5B DNA MER1_type -64 118 22 237 369 27 0 chr3 11374821 11374932 -216149646 + MIR SINE MIR 32 145 -117 325 300 169 25 chr3 11375506 11375666 -216148912 + MIR3 SINE MIR 20 202 -6 244 279 34 32 chr3 11375781 11375928 -216148650 + MIR SINE MIR 2 218 -44 220 177 177 32 chr3 11376591 11376653 -216147925 + MIR SINE MIR 77 147 -115 204 232 98 24 chr3 11376701 11376783 -216147795 + L2 LINE L2 3159 3246 -26 1281 63 0 46 chr3 11377356 11377531 -216147047 + L1PA6 LINE L1 5977 6143 -11 200 245 113 38 chr3 11377645 11377751 -216146827 + L2 LINE L2 3149 3262 -10 180 0 0 0 chr3 11377787 11377807 -216146771 + (GGGA)n Simple_repeat Simple_repeat 2 21 0 304 269 104 52 chr3 11377976 11378110 -216146468 + MIR SINE MIR 40 180 -82 237 256 77 39 chr3 11378138 11378216 -216146362 - MIR3 SINE MIR -40 168 88 628 203 17 0 chr3 11378218 11378336 -216146242 - MLT1K LTR MaLR 0 555 436 333 253 158 51 chr3 11378388 11378546 -216146032 - MLT1H LTR MaLR -319 230 56 189 107 0 0 chr3 11378974 11379002 -216145576 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 239 403 8 0 chr3 11379107 11379236 -216145342 + (CA)n Simple_repeat Simple_repeat 1 130 0 284 260 13 13 chr3 11379823 11379900 -216144678 + MIR SINE MIR 17 93 -115 23 33 0 0 chr3 11380433 11380463 -216144115 + AT_rich Low_complexity Low_complexity 1 30 0 321 307 69 55 chr3 11380543 11380761 -216143817 - L1MC4a LINE L1 -1747 6061 5841 667 301 9 19 chr3 11380777 11380988 -216143590 - MIR SINE MIR -8 254 47 1708 161 0 4 chr3 11381072 11381351 -216143227 + AluJb SINE Alu 13 290 -22 316 276 197 0 chr3 11382447 11382574 -216142004 - MLT1K LTR MaLR -18 570 419 245 289 115 39 chr3 11382586 11382690 -216141888 + L2 LINE L2 3197 3308 -5 194 61 0 30 chr3 11382765 11382798 -216141780 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 441 0 0 0 chr3 11382810 11382859 -216141719 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 1197 245 78 59 chr3 11382866 11383290 -216141288 - MLT1K LTR MaLR -155 433 2 678 320 92 31 chr3 11383379 11383738 -216140840 + L2 LINE L2 2886 3266 -6 357 216 0 0 chr3 11383845 11383933 -216140645 + (TCCA)n Simple_repeat Simple_repeat 4 91 0 293 274 132 9 chr3 11383984 11384090 -216140488 - L2 LINE L2 -2 3311 3193 295 292 57 94 chr3 11384418 11384528 -216140050 + MIR3 SINE MIR 3 106 -102 2175 85 0 0 chr3 11384528 11384833 -216139745 - AluSg SINE Alu 0 305 1 295 292 57 94 chr3 11384833 11384913 -216139665 + MIR3 SINE MIR 106 187 -21 1014 258 21 0 chr3 11385388 11385621 -216138957 + MIR SINE MIR 24 261 -1 1307 112 21 0 chr3 11386682 11386870 -216137708 - L1PA10 LINE L1 -1 6167 5976 189 107 0 0 chr3 11387338 11387366 -216137212 + (TGG)n Simple_repeat Simple_repeat 1 28 0 942 232 77 0 chr3 11387389 11387609 -216136969 - MIR SINE MIR -22 240 4 2278 112 3 0 chr3 11387703 11387999 -216136579 + AluSq SINE Alu 3 299 -14 904 122 0 38 chr3 11388401 11388532 -216136046 + AluJb SINE Alu 1 126 -186 1862 232 35 14 chr3 11388593 11389085 -216135493 + L1ME1 LINE L1 5584 6085 -81 366 283 0 33 chr3 11389108 11389200 -216135378 + MIR3 SINE MIR 103 191 -17 261 0 0 0 chr3 11389609 11389638 -216134940 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 217 231 0 0 chr3 11389691 11389743 -216134835 + (ATG)n Simple_repeat Simple_repeat 2 53 0 300 287 120 0 chr3 11390751 11390859 -216133719 + MER117 DNA MER1_type 2 122 -75 877 142 0 22 chr3 11390861 11390995 -216133583 + FLAM_C SINE Alu 1 131 -2 3755 187 30 21 chr3 11390995 11391071 -216133507 + L1MB7 LINE L1 5325 5399 -785 2152 141 13 0 chr3 11391071 11391375 -216133203 + AluJb SINE Alu 1 308 -4 3755 187 30 21 chr3 11391375 11392074 -216132504 + L1MB7 LINE L1 5399 6107 -77 23 0 0 0 chr3 11392074 11392097 -216132481 + AT_rich Low_complexity Low_complexity 1 23 0 557 298 26 37 chr3 11392142 11392333 -216132245 + MIR3 SINE MIR 17 205 -3 509 269 248 38 chr3 11392803 11393248 -216131330 - L2 LINE L2 -38 3275 2727 1894 143 21 4 chr3 11393265 11393544 -216131034 - AluSx SINE Alu -28 284 1 1998 131 6 44 chr3 11393761 11394082 -216130496 + AluJo SINE Alu 1 309 -3 241 350 41 0 chr3 11394544 11394641 -216129937 - L2 LINE L2 -31 3241 3141 448 237 148 106 chr3 11395177 11395460 -216129118 - L2 LINE L2 0 3272 2978 256 260 39 52 chr3 11395621 11395698 -216128880 - MIR SINE MIR -182 80 5 292 298 0 12 chr3 11396066 11396150 -216128428 + MLT1K LTR MaLR 182 264 -324 233 219 12 49 chr3 11396266 11396348 -216128230 + MLT1K LTR MaLR 454 532 -56 2297 122 0 0 chr3 11396900 11397204 -216127374 - AluSx SINE Alu -8 304 1 219 69 0 0 chr3 11397346 11397375 -216127203 + (CA)n Simple_repeat Simple_repeat 1 29 0 216 0 0 0 chr3 11397645 11397669 -216126909 + (CAA)n Simple_repeat Simple_repeat 1 24 0 627 311 0 5 chr3 11398662 11398855 -216125723 - MIR SINE MIR 0 262 71 189 0 0 0 chr3 11399229 11399250 -216125328 + (TC)n Simple_repeat Simple_repeat 2 22 0 282 324 0 0 chr3 11399600 11399671 -216124907 + (CCCA)n Simple_repeat Simple_repeat 2 72 0 801 194 0 0 chr3 11399671 11399851 -216124727 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 1027 278 64 82 chr3 11400461 11401024 -216123554 - L1ME3A LINE L1 -214 5956 5384 1863 151 0 20 chr3 11401024 11401316 -216123262 - AluJo SINE Alu -13 299 14 1027 278 64 82 chr3 11401316 11402030 -216122548 - L1ME3A LINE L1 -786 5384 4708 1989 134 6 26 chr3 11402058 11402371 -216122207 + AluJo SINE Alu 6 312 0 345 241 50 60 chr3 11402397 11402596 -216121982 + L1M4 LINE L1 2788 2984 -3162 251 267 79 0 chr3 11402743 11402844 -216121734 - L1M4 LINE L1 -2097 4049 3941 * 262 310 172 0 chr3 11402840 11402985 -216121593 + L1M4 LINE L1 4039 4208 -1938 36 0 0 0 chr3 11403140 11403176 -216121402 + AT_rich Low_complexity Low_complexity 1 36 0 1731 185 0 17 chr3 11403188 11403205 -216121373 - AluJo SINE Alu -15 297 281 426 85 0 0 chr3 11403205 11403264 -216121314 + (TA)n Simple_repeat Simple_repeat 1 59 0 1731 185 0 17 chr3 11403264 11403548 -216121030 - AluJo SINE Alu -31 281 1 624 264 165 0 chr3 11403564 11403776 -216120802 - MIR SINE MIR -13 249 3 1113 289 74 5 chr3 11403891 11404285 -216120293 + LTR16A LTR ERVL 19 439 -11 1683 153 51 0 chr3 11404547 11404822 -216119756 - AluJo SINE Alu -23 289 1 516 257 90 0 chr3 11404895 11405039 -216119539 + MIR SINE MIR 102 258 -4 353 68 0 0 chr3 11405866 11405910 -216118668 + MIR3 SINE MIR 115 158 -50 1130 178 5 0 chr3 11405911 11406096 -216118482 + MER5A DNA MER1_type 2 187 -2 503 295 52 52 chr3 11406127 11406456 -216118122 - MER102b DNA MER1_type -12 329 1 906 355 115 15 chr3 11406833 11407484 -216117094 + L3 LINE CR1 786 1501 -76 924 269 97 71 chr3 11407521 11408057 -216116521 + MLT1K LTR MaLR 37 586 -2 395 333 92 19 chr3 11408434 11408641 -216115937 - MIR SINE MIR -6 256 35 621 269 26 52 chr3 11409606 11409874 -216114704 - MIR SINE MIR 0 262 2 206 283 0 0 chr3 11409978 11410024 -216114554 - MIR SINE MIR -57 151 106 310 219 0 0 chr3 11410030 11410094 -216114484 - L2 LINE L2 -9 3263 3200 901 246 79 61 chr3 11410108 11410680 -216113898 + L1ME4a LINE L1 5522 6103 -18 284 263 124 25 chr3 11411174 11411337 -216113241 - MIR3 SINE MIR -37 171 21 1074 158 16 0 chr3 11411763 11411947 -216112631 + MER5A DNA MER1_type 1 187 -2 2128 160 11 3 chr3 11412019 11412382 -216112196 - MER47A DNA MER2_type 0 366 1 2420 90 63 0 chr3 11412757 11413091 -216111487 + THE1A LTR MaLR 1 355 0 201 158 26 0 chr3 11413164 11413202 -216111376 + (CACCC)n Simple_repeat Simple_repeat 3 41 0 261 307 33 65 chr3 11413683 11413836 -216110742 + L2 LINE L2 2911 3058 -255 907 171 50 11 chr3 11413845 11414026 -216110552 + MER5A DNA MER1_type 1 188 -1 367 273 61 0 chr3 11414047 11414146 -216110432 + L2 LINE L2 3141 3245 -27 219 255 10 71 chr3 11414175 11414273 -216110305 - L2 LINE L2 -246 3026 2935 747 219 43 12 chr3 11414419 11414583 -216109995 + MER5B DNA MER1_type 4 172 -6 1916 166 7 0 chr3 11414594 11414889 -216109689 + AluJo SINE Alu 1 297 -15 225 296 0 0 chr3 11414975 11415029 -216109549 + (TGGG)n Simple_repeat Simple_repeat 1 54 0 224 294 123 70 chr3 11415801 11416199 -216108379 - L2 LINE L2 -38 3234 2816 311 335 50 29 chr3 11416426 11416668 -216107910 - L2 LINE L2 -810 2504 2258 185 167 148 102 chr3 11417138 11417246 -216107332 + MIR SINE MIR 8 120 -142 587 280 50 121 chr3 11417316 11417795 -216106783 - L2 LINE L2 -1 3271 2827 416 251 140 39 chr3 11418661 11418840 -216105738 - L2 LINE L2 -2 3311 3115 276 258 67 34 chr3 11419089 11419178 -216105400 + L2 LINE L2 3180 3271 -1 2409 151 38 16 chr3 11419407 11419857 -216104721 - MLT1C LTR MaLR -1 466 7 1938 87 68 13 chr3 11419857 11420167 -216104411 + THE1C LTR MaLR 1 327 -48 389 335 82 26 chr3 11420370 11420564 -216104014 + MIR SINE MIR 31 235 -27 416 352 28 56 chr3 11421128 11421341 -216103237 - MIR SINE MIR -26 236 30 488 208 129 16 chr3 11421977 11422301 -216102277 + MER113 DNA MER1_type? 19 413 -108 637 280 28 11 chr3 11422381 11422563 -216102015 - L3 LINE CR1 -105 1472 1288 492 341 23 56 chr3 11423012 11423226 -216101352 + MIR SINE MIR 30 236 -26 1672 166 14 54 chr3 11424095 11424420 -216100158 + AluJo SINE Alu 1 313 0 192 77 0 0 chr3 11424499 11424525 -216100053 + (TCC)n Simple_repeat Simple_repeat 2 27 0 620 275 12 6 chr3 11424885 11425045 -216099533 - MER5A DNA MER1_type -3 186 26 413 276 40 63 chr3 11425231 11425405 -216099173 - L2 LINE L2 0 3272 3103 197 314 88 0 chr3 11425707 11425809 -216098769 + L2 LINE L2 2964 3074 -198 1179 248 93 20 chr3 11425811 11426250 -216098328 + MLT1H1 LTR MaLR 18 488 -67 448 269 115 0 chr3 11426380 11426484 -216098094 + L2 LINE L2 3157 3272 0 189 240 160 0 chr3 11426492 11426567 -216098011 - L2 LINE L2 -167 3105 3019 183 402 12 0 chr3 11426703 11426785 -216097793 + L2 LINE L2 3189 3271 -1 217 291 103 51 chr3 11426804 11426921 -216097657 + MIR SINE MIR 19 141 -67 398 344 52 7 chr3 11427255 11427409 -216097169 + MIR3 SINE MIR 19 179 -29 243 266 83 37 chr3 11428271 11428380 -216096198 + MIR SINE MIR 51 164 -98 368 226 150 8 chr3 11428430 11428563 -216096015 + L1ME4a LINE L1 5968 6119 -2 2501 70 0 0 chr3 11428684 11428983 -216095595 + AluY SINE Alu 1 299 -12 2580 156 16 9 chr3 11429176 11429626 -216094952 + L1MB3 LINE L1 5727 6179 -4 192 77 0 0 chr3 11429626 11429652 -216094926 + (CATA)n Simple_repeat Simple_repeat 2 27 0 2210 113 7 0 chr3 11429657 11429941 -216094637 + AluSx SINE Alu 1 286 -26 330 222 0 0 chr3 11429941 11430004 -216094574 + L1MC4 LINE L1 6641 6703 -1339 207 0 0 0 chr3 11430020 11430043 -216094535 + (GA)n Simple_repeat Simple_repeat 2 24 0 403 252 94 38 chr3 11430667 11430826 -216093752 - MIR SINE MIR 0 262 95 890 277 126 25 chr3 11431364 11431834 -216092744 + MER113 DNA MER1_type? 5 521 0 674 255 101 49 chr3 11432276 11432582 -216091996 + Charlie2 DNA MER1_type 2 323 -2539 1942 112 52 0 chr3 11432582 11432851 -216091727 + AluSg SINE Alu 1 283 -27 318 80 0 0 chr3 11432851 11432901 -216091677 + (CTAA)n Simple_repeat Simple_repeat 3 52 0 1325 198 0 8 chr3 11432919 11433166 -216091412 + L1PB4 LINE L1 5908 6152 -4 206 0 0 0 chr3 11433262 11433285 -216091293 + MER5C DNA MER1_type 4 26 -298 1628 151 0 53 chr3 11433289 11433574 -216091004 + AluJo SINE Alu 18 287 -25 385 97 32 32 chr3 11433576 11433638 -216090940 + MER5A DNA MER1_type 10 71 -118 828 182 0 82 chr3 11433639 11433676 -216090902 + AluJo SINE Alu 88 126 -186 2313 99 0 3 chr3 11433676 11433979 -216090599 - AluSc SINE Alu -7 302 1 828 182 0 82 chr3 11433979 11434111 -216090467 + AluJo SINE Alu 126 243 -69 207 0 0 0 chr3 11434137 11434160 -216090418 + (GAAAA)n Simple_repeat Simple_repeat 1 23 0 255 103 0 0 chr3 11434161 11434200 -216090378 + (GGGGA)n Simple_repeat Simple_repeat 5 43 0 268 150 62 38 chr3 11434218 11434298 -216090280 + L1MA10 LINE L1 6253 6334 0 276 250 230 20 chr3 11434310 11434410 -216090168 + MER5A DNA MER1_type 69 189 0 731 208 156 34 chr3 11434421 11434800 -216089778 + Charlie2 DNA MER1_type 2231 2655 -207 800 271 34 7 chr3 11434801 11435070 -216089508 + L1ME3 LINE L1 5615 5890 -272 591 273 78 0 chr3 11435084 11435289 -216089289 + L1ME3 LINE L1 5942 6162 0 705 165 16 8 chr3 11435337 11435458 -216089120 - FLAM_C SINE Alu -17 126 5 397 160 4 208 chr3 11435475 11435706 -216088872 + Charlie2 DNA MER1_type 2663 2846 -16 2320 105 0 0 chr3 11436000 11436294 -216088284 - AluSx SINE Alu -18 294 1 339 167 65 9 chr3 11436362 11436470 -216088108 + (CA)n Simple_repeat Simple_repeat 1 114 0 271 282 46 81 chr3 11436680 11436854 -216087724 - MIR SINE MIR -93 169 2 183 80 0 0 chr3 11437399 11437424 -216087154 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 193 295 64 13 chr3 11437579 11437657 -216086921 - MIR3 SINE MIR -23 185 104 2428 99 0 10 chr3 11437663 11437975 -216086603 - AluSx SINE Alu -3 309 1 210 350 58 0 chr3 11438001 11438104 -216086474 + L2 LINE L2 2697 2805 -509 3554 150 60 19 chr3 11438328 11438996 -216085582 - L1MC2 LINE L1 -9 6335 5641 260 94 57 0 chr3 11438997 11439050 -216085528 - L1MC2 LINE L1 0 6344 6289 299 128 73 18 chr3 11439227 11439336 -216085242 + (TA)n Simple_repeat Simple_repeat 2 116 0 752 219 56 85 chr3 11439350 11439436 -216085142 - L1MC2 LINE L1 -1865 5943 5856 2097 131 0 7 chr3 11439436 11439727 -216084851 + AluSx SINE Alu 1 289 -23 752 219 56 85 chr3 11439727 11439959 -216084619 - L1MC2 LINE L1 -1952 5856 5634 479 203 23 73 chr3 11440073 11440250 -216084328 + L1MC5 LINE L1 7758 7925 -36 504 297 36 0 chr3 11440709 11440847 -216083731 - MIR SINE MIR -72 190 48 593 223 192 16 chr3 11441081 11441274 -216083304 + MIR SINE MIR 6 232 -30 648 133 285 0 chr3 11441286 11441444 -216083134 - MER3 DNA MER1_type -6 203 1 426 298 48 37 chr3 11441760 11441948 -216082630 + MIR SINE MIR 21 210 -52 353 267 134 31 chr3 11441991 11442216 -216082362 + MIR SINE MIR 2 250 -12 204 79 0 53 chr3 11442631 11442669 -216081909 + (CCCCG)n Simple_repeat Simple_repeat 1 36 0 273 227 96 18 chr3 11442903 11443002 -216081576 - MIR SINE MIR -60 148 28 568 270 15 7 chr3 11443102 11443239 -216081339 + MIR SINE MIR 20 157 -105 490 274 8 0 chr3 11443267 11443391 -216081187 - MIR SINE MIR -65 197 73 1115 214 114 80 chr3 11444388 11444845 -216079733 + MER113 DNA MER1_type? 6 483 -38 2012 118 74 6 chr3 11444845 11445183 -216079395 + MER46B DNA MER2_type 1 236 0 1115 214 114 80 chr3 11445183 11445224 -216079354 + MER113 DNA MER1_type? 483 521 0 199 254 48 16 chr3 11445390 11445453 -216079125 + L2 LINE L2 3249 3313 0 2089 209 47 10 chr3 11445464 11445951 -216078627 + MLT1D LTR MaLR 1 505 0 206 278 102 46 chr3 11446176 11446284 -216078294 - L2 LINE L2 -11 3261 3148 333 68 0 0 chr3 11446359 11446403 -216078175 + (CA)n Simple_repeat Simple_repeat 1 44 0 715 303 84 9 chr3 11446404 11446737 -216077841 + L1ME4a LINE L1 5681 6038 -83 949 239 41 18 chr3 11446779 11446997 -216077581 - MER58A DNA MER1_type 0 224 2 450 0 0 0 chr3 11447796 11447846 -216076732 + (TG)n Simple_repeat Simple_repeat 2 51 0 244 191 138 64 chr3 11448349 11448443 -216076135 + MIR SINE MIR 104 204 -58 287 229 29 0 chr3 11448862 11448932 -216075646 + MIR SINE MIR 54 125 -83 1998 152 0 16 chr3 11449067 11449382 -216075196 - AluJb SINE Alu -2 310 1 645 277 36 111 chr3 11450007 11450691 -216073887 + L2 LINE L2 2367 2984 -288 2747 82 6 3 chr3 11450691 11451045 -216073533 + THE1A LTR MaLR 1 355 0 645 277 36 111 chr3 11451045 11451066 -216073512 + L2 LINE L2 2984 3005 -267 375 200 120 0 chr3 11451088 11451188 -216073390 + MIR SINE MIR 141 252 -10 2135 130 0 10 chr3 11451314 11451638 -216072940 - AluSx SINE Alu 0 312 1 265 332 58 63 chr3 11451781 11452281 -216072297 - L2 LINE L2 0 3272 2772 255 200 20 0 chr3 11452784 11452834 -216071744 + L2 LINE L2 2978 3028 -244 377 275 87 29 chr3 11453270 11453408 -216071170 - MIR SINE MIR -34 228 83 216 67 0 0 chr3 11454396 11454426 -216070152 + (GGA)n Simple_repeat Simple_repeat 1 30 0 2345 97 3 3 chr3 11455176 11455486 -216069092 + AluSg SINE Alu 1 310 0 908 278 50 42 chr3 11455622 11456022 -216068556 + MLT1H LTR MaLR 1 403 -146 489 260 84 101 chr3 11456161 11456615 -216067963 - L2 LINE L2 0 3272 2827 228 67 0 0 chr3 11457036 11457066 -216067512 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 646 179 32 8 chr3 11458300 11458423 -216066155 + L2 LINE L2 3181 3306 -7 234 81 0 0 chr3 11458630 11458667 -216065911 + (TC)n Simple_repeat Simple_repeat 2 38 0 988 248 48 22 chr3 11458965 11459341 -216065237 + LTR16A LTR ERVL 26 450 0 604 187 134 53 chr3 11459518 11459689 -216064889 - MIR SINE MIR 0 262 78 435 267 93 0 chr3 11460952 11461113 -216063465 + Charlie8 DNA MER1_type 64 239 -2178 863 266 67 57 chr3 11461244 11462056 -216062522 - L1MEd LINE L1 -856 1634 845 2546 51 0 0 chr3 11462073 11462366 -216062212 - AluY SINE Alu -18 293 1 1992 120 157 19 chr3 11463321 11463697 -216060881 - MSTA LTR MaLR 0 428 1 622 254 225 0 chr3 11463725 11463934 -216060644 - MIR SINE MIR 0 262 7 292 229 156 21 chr3 11464786 11464882 -216059696 - MIR SINE MIR -103 159 51 435 101 14 0 chr3 11465852 11465921 -216058657 + L1PA15 LINE L1 6087 6156 -9 608 201 255 0 chr3 11466274 11466423 -216058155 + MIR SINE MIR 12 198 -64 2423 183 82 19 chr3 11466438 11466963 -216057615 + MLT1F1 LTR MaLR 1 558 -9 195 209 0 149 chr3 11466976 11467043 -216057535 + MIR SINE MIR 190 246 -16 1574 161 92 69 chr3 11467116 11467563 -216057015 + L1MC4 LINE L1 6985 7441 -601 284 258 27 30 chr3 11467644 11467799 -216056779 - MIR SINE MIR -27 235 34 2487 147 70 2 chr3 11468128 11468571 -216056007 + L1MB3 LINE L1 5704 6176 -7 510 179 51 26 chr3 11468987 11469104 -216055474 + MIR SINE MIR 87 206 -56 821 290 67 0 chr3 11469149 11469373 -216055205 + MIR SINE MIR 13 251 -11 246 274 24 12 chr3 11470151 11470235 -216054343 - MIR SINE MIR -12 250 166 1853 71 5 0 chr3 11470237 11470461 -216054117 - AluSp SINE Alu -2 311 87 206 295 16 0 chr3 11470461 11470522 -216054056 - MIR SINE MIR -114 94 33 1981 145 3 0 chr3 11470527 11470856 -216053722 - AluSx SINE Alu 0 330 1 189 224 259 35 chr3 11471121 11471237 -216053341 - MIR3 SINE MIR -62 146 5 476 308 162 32 chr3 11471817 11472328 -216052250 + L2 LINE L2 2712 3272 0 465 257 142 0 chr3 11472477 11472590 -216051988 + L2 LINE L2 3142 3270 -2 484 232 92 30 chr3 11472619 11472783 -216051795 + MLT1J LTR MaLR 11 184 -327 306 252 148 26 chr3 11472798 11472953 -216051625 + MLT1J LTR MaLR 303 476 -35 313 385 65 6 chr3 11472972 11473323 -216051255 + L2 LINE L2 582 953 -2361 461 253 41 41 chr3 11474253 11474399 -216050179 - MIR SINE MIR -50 212 67 246 182 45 0 chr3 11475133 11475177 -216049401 + MIR SINE MIR 5 50 -212 * 547 287 126 12 chr3 11475166 11475333 -216049245 - MER91A DNA MER1_type -10 186 1 * 709 282 44 5 chr3 11475333 11475536 -216049042 + MIR SINE MIR 51 261 -1 299 313 188 16 chr3 11475547 11475803 -216048775 - L2 LINE L2 -86 3186 2887 335 207 283 24 chr3 11476107 11476242 -216048336 + MIR3 SINE MIR 12 183 -25 202 239 30 0 chr3 11476952 11477039 -216047539 - MIR SINE MIR -84 124 82 442 260 192 23 chr3 11477574 11477746 -216046832 + MIR SINE MIR 21 212 -50 26 74 0 0 chr3 11477854 11477908 -216046670 + AT_rich Low_complexity Low_complexity 1 54 0 1430 204 95 41 chr3 11478031 11478349 -216046229 - MLT1C LTR MaLR 0 467 117 2155 138 0 28 chr3 11478349 11478669 -216045909 - AluJb SINE Alu -1 311 1 1430 204 95 41 chr3 11478669 11478792 -216045786 - MLT1C LTR MaLR -350 117 2 236 370 65 5 chr3 11479699 11479883 -216044695 - L2 LINE L2 -79 3193 2999 192 276 114 9 chr3 11479882 11479987 -216044591 + L2 LINE L2 2897 3012 -260 * 1699 157 134 3 chr3 11480254 11480604 -216043974 + L1MB3 LINE L1 5788 6183 0 281 228 0 38 chr3 11480642 11480721 -216043857 + GA-rich Low_complexity Low_complexity 4 79 0 182 384 0 0 chr3 11480757 11480830 -216043748 - MIR SINE MIR -7 255 183 210 215 161 43 chr3 11480997 11481090 -216043488 - MIR SINE MIR -50 212 109 409 321 60 30 chr3 11481500 11481668 -216042910 + L2 LINE L2 3097 3269 -3 414 348 41 37 chr3 11482073 11482154 -216042424 + MIR SINE MIR 13 92 -170 2227 122 0 0 chr3 11482154 11482449 -216042129 - AluSg SINE Alu -15 295 1 414 348 41 37 chr3 11482449 11482611 -216041967 + MIR SINE MIR 92 257 -5 265 301 14 0 chr3 11482643 11482716 -216041862 + MER103 DNA DNA 90 163 -3 2308 152 56 12 chr3 11482748 11483156 -216041422 - MSTB LTR MaLR 0 426 1 486 291 66 22 chr3 11483366 11483548 -216041030 - L2 LINE L2 -3 3310 3121 262 210 51 65 chr3 11483569 11483707 -216040871 - L2 LINE L2 -331 2982 2847 1182 289 57 28 chr3 11483999 11484215 -216040363 + MLT1K LTR MaLR 4 212 -264 2068 146 3 0 chr3 11484215 11484523 -216040055 + AluJb SINE Alu 1 309 -3 1182 289 57 28 chr3 11484523 11484766 -216039812 + MLT1K LTR MaLR 212 476 0 273 279 125 10 chr3 11484793 11484897 -216039681 - MIR SINE MIR -69 139 24 629 269 203 9 chr3 11485506 11485718 -216038860 + MIR SINE MIR 7 259 -3 269 238 159 0 chr3 11486036 11486131 -216038447 - MIR SINE MIR -95 113 13 209 361 0 14 chr3 11486110 11486182 -216038396 + L2 LINE L2 3219 3289 -24 * 207 321 69 50 chr3 11487021 11487180 -216037398 - L3 LINE CR1 -20 1557 1396 416 281 81 24 chr3 11487240 11487414 -216037164 + MIR SINE MIR 19 209 -53 1477 226 118 19 chr3 11487557 11488025 -216036553 - MLT1E2 LTR MaLR -1 625 112 260 253 53 21 chr3 11488025 11488120 -216036458 + MLT1C LTR MaLR 1 98 -369 2274 129 0 3 chr3 11488122 11488432 -216036146 + AluSx SINE Alu 1 309 -3 27 0 0 0 chr3 11488461 11488488 -216036090 + AT_rich Low_complexity Low_complexity 1 27 0 1069 195 104 44 chr3 11488488 11488852 -216035726 + MLT1C LTR MaLR 82 467 0 2074 128 0 28 chr3 11488868 11489188 -216035390 - AluJo SINE Alu -1 311 1 329 205 205 12 chr3 11489196 11489279 -216035299 - MLT1E2 LTR MaLR -399 106 8 303 244 23 122 chr3 11489530 11489702 -216034876 + MIR SINE MIR 107 261 -1 257 234 129 53 chr3 11489729 11489900 -216034678 + L1ME4a LINE L1 5932 6115 -6 288 0 0 0 chr3 11489998 11490030 -216034548 + (CA)n Simple_repeat Simple_repeat 2 33 0 437 253 99 31 chr3 11490528 11490690 -216033888 + MIR SINE MIR 1 173 -89 400 69 48 18 chr3 11491241 11491309 -216033269 + AluSg/x SINE Alu 74 135 -165 1643 147 22 56 chr3 11491744 11492064 -216032514 - AluJo SINE Alu 0 312 4 191 374 148 30 chr3 11492330 11492696 -216031882 + L2 LINE L2 2853 3261 -11 287 365 41 14 chr3 11492718 11492863 -216031715 - MIR SINE MIR -15 247 99 2264 48 0 0 chr3 11493198 11493471 -216031107 - L1PA7 LINE L1 -5 6149 5877 291 207 0 0 chr3 11494318 11494376 -216030202 + L1ME3A LINE L1 6102 6159 -11 355 254 105 0 chr3 11494614 11494728 -216029850 - MIR3 SINE MIR -4 204 79 265 186 0 0 chr3 11495739 11495782 -216028796 - MSTA LTR MaLR -385 43 1 418 250 26 9 chr3 11495821 11495937 -216028641 + MER117 DNA MER1_type 1 118 -79 238 298 123 18 chr3 11495982 11496096 -216028482 - MIR3 SINE MIR -48 160 35 652 263 72 16 chr3 11496150 11496344 -216028234 - MIR SINE MIR -1 261 57 258 308 39 10 chr3 11497147 11497251 -216027327 + L2 LINE L2 2951 3057 -215 240 149 0 21 chr3 11497526 11497573 -216027005 + L1ME4a LINE L1 6073 6118 -3 529 289 114 59 chr3 11497726 11497916 -216026662 - L2 LINE L2 -191 3081 2903 2574 157 31 2 chr3 11497916 11498331 -216026247 + MSTA LTR MaLR 1 427 -1 529 289 114 59 chr3 11498331 11498354 -216026224 - L2 LINE L2 -369 2903 2883 2972 176 25 68 chr3 11498354 11498986 -216025592 + MER77 LTR ERV1 1 605 0 529 289 114 59 chr3 11498986 11499448 -216025130 - L2 LINE L2 -389 2883 2370 637 262 140 4 chr3 11500455 11500684 -216023894 + MIR SINE MIR 3 262 0 467 276 115 13 chr3 11500823 11500979 -216023599 - MIR3 SINE MIR -22 186 15 508 202 19 0 chr3 11501055 11501159 -216023419 + LTR16A1 LTR ERVL 18 123 -334 1681 200 17 3 chr3 11501202 11501547 -216023031 + MER63B DNA MER1_type 1 350 -86 744 262 56 25 chr3 11501619 11501905 -216022673 + LTR16A1 LTR ERVL 158 452 -5 1880 162 0 0 chr3 11501905 11502214 -216022364 + AluJo SINE Alu 1 309 -3 222 194 32 16 chr3 11502699 11502761 -216021817 + T-rich Low_complexity Low_complexity 2 64 0 245 176 0 0 chr3 11502763 11502814 -216021764 - L1MB3 LINE L1 -1 6182 6132 238 335 68 0 chr3 11502826 11503017 -216021561 - MER113 DNA MER1_type? -313 208 5 470 293 29 7 chr3 11503017 11503157 -216021421 - MIR3 SINE MIR -51 157 15 245 333 37 9 chr3 11503591 11503699 -216020879 + MIR SINE MIR 43 153 -109 207 263 200 27 chr3 11503778 11503926 -216020652 - MIR SINE MIR -62 200 22 289 150 50 0 chr3 11504087 11504147 -216020431 + MER103 DNA DNA 93 155 -11 519 245 148 0 chr3 11504690 11504845 -216019733 + MER45A DNA AcHobo 1 178 0 322 205 167 39 chr3 11504850 11504928 -216019650 + L2 LINE L2 3147 3234 -38 397 310 136 11 chr3 11505696 11505880 -216018698 - L1ME4a LINE L1 -225 5896 5690 199 316 84 21 chr3 11506573 11506668 -216017910 - L2 LINE L2 -1 3312 3212 556 287 75 11 chr3 11506945 11507119 -216017459 + MER5A DNA MER1_type 2 186 -3 478 224 48 40 chr3 11508060 11508185 -216016393 - MIR SINE MIR -7 255 130 480 290 148 14 chr3 11509035 11509369 -216015209 + LTR16A LTR ERVL 55 445 -12 375 226 54 0 chr3 11509519 11509612 -216014966 + MIR SINE MIR 47 144 -64 529 258 65 97 chr3 11509713 11509992 -216014586 + L2 LINE L2 3002 3271 -1 217 222 0 0 chr3 11510083 11510119 -216014459 - MIR SINE MIR -71 191 156 1578 174 32 9 chr3 11511370 11511686 -216012892 - MER33 DNA MER1_type 0 324 2 2592 143 22 4 chr3 11511921 11512375 -216012203 + L1MB3 LINE L1 5707 6168 -15 579 298 76 25 chr3 11512436 11512634 -216011944 - MIR SINE MIR -37 225 18 1458 273 48 36 chr3 11512646 11513234 -216011344 + L2 LINE L2 2718 3311 -2 267 257 48 67 chr3 11513238 11513265 -216011313 - MIR SINE MIR -61 201 175 498 243 27 0 chr3 11513265 11513376 -216011202 + MER81 DNA DNA 1 114 0 267 257 48 67 chr3 11513376 11513453 -216011125 - MIR SINE MIR -87 175 99 243 365 139 0 chr3 11513545 11513703 -216010875 + MIR SINE MIR 8 180 -62 1110 249 10 21 chr3 11513712 11514113 -216010465 - LTR16A LTR ERVL 0 450 16 351 283 115 37 chr3 11514965 11515156 -216009422 + MIR SINE MIR 23 228 -34 326 313 55 50 chr3 11515431 11515632 -216008946 + L1MC4a LINE L1 5135 5336 -810 562 313 55 30 chr3 11515645 11516062 -216008516 + L1MC4a LINE L1 5394 5824 -297 * 2249 215 19 24 chr3 11516019 11516554 -216008024 + L1MB7 LINE L1 5639 6170 -14 911 169 28 17 chr3 11516561 11516739 -216007839 + AluJo SINE Alu 121 300 -12 1899 133 0 16 chr3 11516774 11517082 -216007496 + AluSx SINE Alu 1 303 -9 1827 157 0 25 chr3 11517888 11518207 -216006371 - AluJo SINE Alu -1 311 1 2121 96 17 0 chr3 11518671 11518964 -216005614 + AluSc SINE Alu 1 298 -11 348 319 124 9 chr3 11518974 11519087 -216005491 + L2 LINE L2 3144 3269 -3 516 337 37 0 chr3 11519168 11519355 -216005223 - MER91A DNA MER1_type -1 195 2 717 283 95 65 chr3 11519765 11520310 -216004268 + L2 LINE L2 2594 3181 -132 327 49 0 0 chr3 11520348 11520389 -216004189 + (CA)n Simple_repeat Simple_repeat 2 42 0 479 275 58 18 chr3 11520513 11520684 -216003894 - MIR SINE MIR -57 205 28 321 285 133 30 chr3 11521525 11521690 -216002888 - MIR3 SINE MIR -9 199 18 3050 163 16 12 chr3 11521717 11522220 -216002358 + MLT2B3 LTR ERVL 3 507 -47 252 279 0 0 chr3 11522222 11522283 -216002295 + (CA)n Simple_repeat Simple_repeat 2 62 0 261 125 71 54 chr3 11522283 11522339 -216002239 + MLT2B3 LTR ERVL 464 520 0 436 306 29 18 chr3 11522481 11522651 -216001927 + MER20B DNA MER1_type 8 179 -604 252 300 38 0 chr3 11522883 11522963 -216001615 - MIR SINE MIR -118 144 62 2138 208 22 7 chr3 11522966 11523428 -216001150 + L1MB3 LINE L1 5715 6183 0 180 0 0 0 chr3 11523843 11523863 -216000715 + (CACAC)n Simple_repeat Simple_repeat 1 20 0 402 281 103 27 chr3 11524223 11524369 -216000209 + L3 LINE CR1 967 1123 -454 249 233 23 70 chr3 11524443 11524529 -216000049 - 7SK RNA RNA -105 88 7 420 207 27 0 chr3 11524695 11524806 -215999772 - MER117 DNA MER1_type -83 114 1 186 193 0 0 chr3 11524830 11524887 -215999691 + T-rich Low_complexity Low_complexity 3 59 0 2098 119 0 16 chr3 11524891 11525202 -215999376 - AluSx SINE Alu -6 306 1 278 49 0 24 chr3 11525202 11525243 -215999335 + (TTTTA)n Simple_repeat Simple_repeat 3 42 0 817 144 0 0 chr3 11525246 11525364 -215999214 - FLAM_C SINE Alu -15 118 1 416 300 232 9 chr3 11525367 11525600 -215998978 + L3 LINE CR1 1244 1528 -49 3060 135 4 21 chr3 11525750 11525799 -215998779 + L1MA4 LINE L1 5784 5832 -468 1964 103 41 3 chr3 11525799 11526091 -215998487 + AluY SINE Alu 1 303 -8 3060 135 4 21 chr3 11526091 11526560 -215998018 + L1MA4 LINE L1 5832 6293 -7 187 266 47 16 chr3 11526914 11526978 -215997600 + L3 LINE CR1 650 715 -862 1522 165 0 22 chr3 11527492 11527765 -215996813 + AluJo SINE Alu 15 281 -31 26 30 0 0 chr3 11527774 11527807 -215996771 + AT_rich Low_complexity Low_complexity 1 33 0 298 257 124 26 chr3 11528235 11528348 -215996230 + MLT1K LTR MaLR 128 251 -337 228 291 18 45 chr3 11528642 11528752 -215995826 + LTR67 LTR ERVL 447 553 -4 1128 229 5 0 chr3 11529330 11529535 -215995043 + MER58A DNA MER1_type 1 206 -18 377 279 118 0 chr3 11529596 11529732 -215994846 + MER103 DNA DNA 14 165 -1 305 258 129 8 chr3 11531561 11531693 -215992885 + L3 LINE CR1 1230 1377 -200 936 265 73 34 chr3 11531955 11532283 -215992295 - MER102b DNA MER1_type 0 341 1 450 248 71 71 chr3 11532549 11532747 -215991831 - L3 LINE CR1 -5 1572 1375 688 240 67 19 chr3 11532747 11532955 -215991623 - L3 LINE CR1 -561 1016 799 947 252 75 69 chr3 11533221 11533539 -215991039 - MER102b DNA MER1_type -10 331 12 672 265 112 19 chr3 11533600 11533815 -215990763 - MIR SINE MIR 0 262 28 560 273 13 27 chr3 11534444 11534594 -215989984 - Charlie8 DNA MER1_type -2174 243 96 2727 13 0 3 chr3 11535009 11535320 -215989258 + AluYb8 SINE Alu 1 310 -8 467 274 233 5 chr3 11536124 11536320 -215988258 - MIR SINE MIR 0 262 23 830 271 54 4 chr3 11536333 11536573 -215988005 - MIR SINE MIR -2 260 9 389 269 167 21 chr3 11536576 11536762 -215987816 - L3 LINE CR1 -858 719 507 1547 161 57 10 chr3 11536818 11537116 -215987462 + AluJo SINE Alu 1 312 0 237 319 149 35 chr3 11537837 11537978 -215986600 - L2 LINE L2 -25 3247 3091 323 260 102 68 chr3 11538040 11538217 -215986361 - MIR SINE MIR -70 192 10 231 88 0 0 chr3 11538752 11538786 -215985792 + (CA)n Simple_repeat Simple_repeat 2 35 0 557 172 11 132 chr3 11538923 11539097 -215985481 - MER5A DNA MER1_type -34 155 3 533 250 88 29 chr3 11539324 11539528 -215985050 - MIR SINE MIR -8 254 39 217 213 0 24 chr3 11540052 11540132 -215984446 + L2 LINE L2 3137 3309 -4 1265 83 0 0 chr3 11541505 11541674 -215982904 + AluSg/x SINE Alu 136 304 -8 1869 98 10 48 chr3 11543169 11543302 -215981276 + AluSx SINE Alu 9 145 -167 202 56 56 0 chr3 11543302 11543338 -215981240 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 1869 98 10 48 chr3 11543338 11543499 -215981079 + AluSx SINE Alu 145 292 -20 421 253 25 74 chr3 11543833 11543995 -215980583 + MIR SINE MIR 13 166 -96 757 164 0 8 chr3 11544364 11544512 -215980066 + AluSg/x SINE Alu 176 312 0 438 220 106 0 chr3 11544559 11544691 -215979887 + L1ME4a LINE L1 5946 6091 -30 210 327 40 30 chr3 11545069 11545170 -215979408 + L3b LINE CR1 1231 1332 -251 379 263 38 30 chr3 11545533 11545666 -215978912 - L2 LINE L2 -4 3309 3176 3252 128 44 11 chr3 11545676 11546268 -215978310 - MER4B LTR ERV1 0 779 3 182 262 0 0 chr3 11546362 11546404 -215978174 - L2 LINE L2 -277 3036 2995 1455 330 169 30 chr3 11547891 11548372 -215976206 - L3 LINE CR1 -8 1569 1156 2170 98 7 3 chr3 11548372 11548678 -215975900 + AluSx SINE Alu 1 307 -5 1455 330 169 30 chr3 11548678 11549076 -215975502 - L3 LINE CR1 -421 1156 815 1524 170 76 10 chr3 11549076 11549365 -215975213 + AluJb SINE Alu 1 308 -4 1455 330 169 30 chr3 11549365 11549614 -215974964 - L3 LINE CR1 -762 815 283 255 265 48 48 chr3 11550178 11550244 -215974334 + MER5B DNA MER1_type 1 69 -109 1297 136 3 183 chr3 11550244 11550605 -215973973 + AluJb SINE Alu 1 296 -16 255 265 48 48 chr3 11550605 11550621 -215973957 + MER5B DNA MER1_type 68 83 -95 202 118 20 98 chr3 11550659 11550710 -215973868 + MIR3 SINE MIR 113 159 -49 229 290 43 32 chr3 11550784 11550877 -215973701 - MIR3 SINE MIR -38 170 77 693 271 94 36 chr3 11551384 11551541 -215973037 + L2 LINE L2 2927 3108 -205 1441 198 7 16 chr3 11551541 11551844 -215972734 - AluJo SINE Alu -12 300 1 693 271 94 36 chr3 11551844 11551963 -215972615 + L2 LINE L2 3108 3219 -94 211 276 35 0 chr3 11551962 11552020 -215972558 - L2 LINE L2 -8 3305 3246 * 352 272 65 19 chr3 11552232 11552387 -215972191 + MIR SINE MIR 21 146 -62 2365 42 0 7 chr3 11553251 11553561 -215971017 + AluY SINE Alu 1 308 0 411 374 25 5 chr3 11553800 11554003 -215970575 + L2 LINE L2 2732 2938 -376 228 288 12 12 chr3 11554003 11554016 -215970562 - L1MA10 LINE L1 -86 6248 6236 597 215 44 0 chr3 11554016 11554151 -215970427 - L1ME2 LINE L1 -91 6073 5933 410 160 20 60 chr3 11554156 11554256 -215970322 + L1ME2 LINE L1 6009 6104 -60 332 43 0 21 chr3 11554835 11554882 -215969696 + (CAT)n Simple_repeat Simple_repeat 3 48 0 913 155 40 0 chr3 11555185 11555359 -215969219 - L1MC3 LINE L1 0 7785 7605 1347 174 0 107 chr3 11555772 11556071 -215968507 + Tigger7 DNA MER2_type 1 267 -2220 678 152 0 0 chr3 11556069 11556168 -215968410 + Tigger7 DNA MER2_type 2489 2587 0 * 21 0 0 0 chr3 11556671 11556692 -215967886 + AT_rich Low_complexity Low_complexity 1 21 0 274 263 97 79 chr3 11556944 11557058 -215967520 - L2 LINE L2 -43 3270 3155 931 133 13 6 chr3 11557061 11557219 -215967359 + AluSg/x SINE Alu 132 290 -22 418 308 55 52 chr3 11557240 11557568 -215967010 - L2 LINE L2 -171 3142 2814 1159 188 94 42 chr3 11558020 11558250 -215966328 + MER33 DNA MER1_type 1 252 -2333 1935 150 0 6 chr3 11558250 11558564 -215966014 - AluSx SINE Alu 0 312 1 1159 188 94 42 chr3 11558564 11558641 -215965937 + MER33 DNA MER1_type 252 324 0 264 280 187 13 chr3 11558645 11558795 -215965783 + MER20B DNA MER1_type 1 176 -43 402 324 0 10 chr3 11558800 11558902 -215965676 - MIR SINE MIR -76 132 32 315 276 92 0 chr3 11559134 11559232 -215965346 + MIR SINE MIR 31 137 -71 505 306 43 39 chr3 11559350 11559605 -215964973 - L2 LINE L2 0 3313 3058 1093 138 28 22 chr3 11559610 11559791 -215964787 + AluJo SINE Alu 87 268 -44 301 74 19 19 chr3 11559793 11559847 -215964731 + (TAAAA)n Simple_repeat Simple_repeat 1 54 0 2220 278 153 37 chr3 11559857 11560500 -215964078 - L2 LINE L2 -261 3052 2485 1910 208 29 9 chr3 11560500 11560919 -215963659 + L1MB7 LINE L1 5757 6183 -1 2220 278 153 37 chr3 11560919 11561646 -215962932 - L2 LINE L2 -828 2485 1536 222 195 0 0 chr3 11561811 11561852 -215962726 + L2 LINE L2 3221 3261 -11 511 275 21 42 chr3 11561865 11562058 -215962520 - MER5A DNA MER1_type 0 189 1 297 0 0 0 chr3 11563788 11563821 -215960757 + (TTTTG)n Simple_repeat Simple_repeat 5 37 0 187 197 0 42 chr3 11564705 11564776 -215959802 + CT-rich Low_complexity Low_complexity 3 70 0 368 293 7 22 chr3 11565271 11565423 -215959155 + MIR SINE MIR 34 182 -64 232 275 247 18 chr3 11566473 11566641 -215957937 + MIR SINE MIR 9 212 -50 2181 113 0 3 chr3 11566660 11566970 -215957608 + AluSg SINE Alu 1 309 -1 286 226 58 123 chr3 11567030 11567185 -215957393 + MIR SINE MIR 87 231 -31 810 185 45 13 chr3 11569273 11569430 -215955148 + FRAM SINE Alu 5 166 0 500 277 82 31 chr3 11569706 11569901 -215954677 - MARNA DNA Mariner -1 585 381 377 234 48 106 chr3 11570035 11570187 -215954391 - MARNA DNA Mariner -393 193 34 393 22 0 0 chr3 11570187 11570233 -215954345 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 1609 148 3 39 chr3 11570239 11570523 -215954055 - AluJb SINE Alu -38 274 1 377 234 48 106 chr3 11570523 11570551 -215954027 - MARNA DNA Mariner -557 29 17 465 259 19 0 chr3 11571076 11571184 -215953394 + MIR SINE MIR 132 241 -21 612 62 0 12 chr3 11573790 11573871 -215950707 + MADE1 DNA Mariner 1 80 0 756 258 191 34 chr3 11573934 11574352 -215950226 - L2 LINE L2 -1 3312 2829 708 276 40 0 chr3 11575195 11575394 -215949184 - MER63A DNA MER1_type 0 210 4 270 193 0 0 chr3 11575414 11575471 -215949107 + (CTA)n Simple_repeat Simple_repeat 2 58 0 717 236 130 88 chr3 11576641 11576980 -215947598 - L2 LINE L2 0 3272 2920 2079 92 0 3 chr3 11578054 11578336 -215946242 - AluSc SINE Alu -28 281 1 804 168 105 53 chr3 11578366 11578575 -215946003 - AluJo SINE Alu -92 220 1 21 0 0 0 chr3 11578581 11578602 -215945976 + AT_rich Low_complexity Low_complexity 1 21 0 180 77 0 0 chr3 11580086 11580112 -215944466 + (GGAA)n Simple_repeat Simple_repeat 3 28 0 244 333 11 68 chr3 11580202 11580386 -215944192 + MIR SINE MIR 36 212 -50 522 318 121 0 chr3 11580537 11580710 -215943868 + MER91A DNA MER1_type 3 196 0 1668 256 90 29 chr3 11580955 11581533 -215943045 + L1MC4a LINE L1 5428 6040 -1768 953 151 29 92 chr3 11581732 11581795 -215942783 - L1MB8 LINE L1 -1 6177 6112 5502 125 21 3 chr3 11581795 11582665 -215941913 + L1MA4A LINE L1 5419 6303 0 953 151 29 92 chr3 11582665 11582839 -215941739 - L1MB8 LINE L1 -66 6112 5955 3350 252 63 57 chr3 11582990 11584478 -215940100 + L1MC4 LINE L1 6431 8039 -3 275 232 74 42 chr3 11585945 11586040 -215938538 - L2 LINE L2 -4 3268 3171 734 283 192 19 chr3 11586040 11586467 -215938111 - MLT1K LTR MaLR 0 588 88 1563 291 38 15 chr3 11587237 11587714 -215936864 - MLT1K LTR MaLR -3 585 98 431 278 198 55 chr3 11588610 11589024 -215935554 - L2 LINE L2 0 3272 2736 516 288 75 57 chr3 11589042 11589323 -215935255 + L2 LINE L2 3005 3290 -23 189 317 33 0 chr3 11589552 11589612 -215934966 + MIR3 SINE MIR 101 162 -46 227 232 0 0 chr3 11590294 11590350 -215934228 + Charlie8 DNA MER1_type 1345 1400 -1017 288 193 145 0 chr3 11590419 11590502 -215934076 - L2 LINE L2 -25 3247 3153 1253 152 115 12 chr3 11590764 11591008 -215933570 - ORSL DNA AcHobo -4 271 3 1250 246 73 27 chr3 11591206 11591617 -215932961 - MLT1K LTR MaLR -5 583 154 189 0 0 0 chr3 11591919 11591940 -215932638 + (TC)n Simple_repeat Simple_repeat 1 21 0 473 257 54 65 chr3 11592503 11592735 -215931843 + MIR SINE MIR 2 230 -32 2044 128 0 29 chr3 11593115 11593428 -215931150 + AluJb SINE Alu 3 306 -6 477 209 18 0 chr3 11593766 11593876 -215930702 - L1ME2 LINE L1 -218 5946 5835 2190 104 0 3 chr3 11593958 11594265 -215930313 - AluSc SINE Alu -3 306 1 12735 198 37 38 chr3 11594419 11596873 -215927705 - L1MB7 LINE L1 0 6995 4540 1850 135 7 3 chr3 11596873 11597194 -215927384 - AluSx SINE Alu 0 322 1 12735 198 37 38 chr3 11597194 11599004 -215925574 - L1MB7 LINE L1 -2455 4540 2761 1733 172 28 8 chr3 11599004 11599364 -215925214 - L1MA6 LINE L1 0 6300 5934 12735 198 37 38 chr3 11599364 11599454 -215925124 - L1MB7 LINE L1 -4234 2761 2672 3692 262 61 18 chr3 11599456 11600570 -215924008 - L1MB7 LINE L1 -5687 1172 11 438 234 177 40 chr3 11601450 11601625 -215922953 + MIR SINE MIR 47 245 -17 426 296 48 0 chr3 11601628 11601753 -215922825 - L2 LINE L2 -1 3312 3182 229 196 0 0 chr3 11601785 11601836 -215922742 + L1MC4 LINE L1 6652 6702 -1340 557 267 18 120 chr3 11601865 11602198 -215922380 - L2 LINE L2 -129 3184 2886 1816 145 0 26 chr3 11602203 11602514 -215922064 + AluJo SINE Alu 1 303 -9 340 343 39 34 chr3 11602516 11602720 -215921858 + L1MC4 LINE L1 7821 8025 -17 522 275 225 39 chr3 11602729 11603187 -215921391 - L2 LINE L2 -399 2915 2373 902 198 0 23 chr3 11604175 11604352 -215920226 - MIR SINE MIR -27 235 63 1759 148 16 30 chr3 11604900 11605203 -215919375 - AluJb SINE Alu -13 299 1 596 172 101 65 chr3 11605203 11605372 -215919206 - MLT1B LTR MaLR -215 175 1 300 262 24 0 chr3 11606074 11606158 -215918420 + MER117 DNA MER1_type 112 197 0 24 0 0 0 chr3 11607726 11607750 -215916828 + AT_rich Low_complexity Low_complexity 1 24 0 210 150 0 0 chr3 11610194 11610234 -215914344 + (TTCA)n Simple_repeat Simple_repeat 4 43 0 600 293 105 39 chr3 11610236 11610570 -215914008 - L2 LINE L2 0 3313 2958 444 256 39 32 chr3 11611312 11611394 -215913184 + MER103 DNA DNA 2 87 -79 1970 135 40 6 chr3 11611394 11611720 -215912858 + MER1B DNA MER1_type 1 337 0 444 256 39 32 chr3 11611720 11611793 -215912785 + MER103 DNA DNA 87 158 -8 268 273 30 0 chr3 11613287 11613353 -215911225 - MIR SINE MIR -126 136 69 763 225 28 34 chr3 11613758 11613936 -215910642 + MIR SINE MIR 22 198 -64 916 255 8 13 chr3 11613998 11614237 -215910341 - MIR SINE MIR -13 249 12 302 352 0 0 chr3 11615215 11615303 -215909275 + L1MC4 LINE L1 6614 6701 -1341 347 318 8 16 chr3 11616501 11616627 -215907951 + MIR SINE MIR 28 152 -110 261 299 127 22 chr3 11617128 11617262 -215907316 - MIR SINE MIR -65 143 1 972 262 20 8 chr3 11620236 11620480 -215904098 - MIR SINE MIR -14 248 2 1933 176 89 0 chr3 11620816 11621175 -215903403 - MSTD LTR MaLR 0 396 6 264 280 64 88 chr3 11621272 11621397 -215903181 - L2 LINE L2 -2 3270 3149 501 288 72 65 chr3 11621560 11621916 -215902662 - MLT1K LTR MaLR -8 580 180 420 176 2 0 chr3 11622023 11622104 -215902474 + MLT1H LTR MaLR 474 549 0 319 310 33 12 chr3 11622596 11622775 -215901803 - MIR3 SINE MIR -64 144 3 427 307 39 7 chr3 11622851 11623004 -215901574 + MIR SINE MIR 19 176 -86 530 293 84 0 chr3 11623161 11623328 -215901250 + MIR3 SINE MIR 7 187 -21 1965 129 0 0 chr3 11623929 11624215 -215900363 + AluSx SINE Alu 14 299 -13 664 247 88 42 chr3 11624227 11624467 -215900111 - MIR SINE MIR -1 261 19 767 248 172 35 chr3 11625227 11625541 -215899037 + L2 LINE L2 2957 3313 0 385 321 172 20 chr3 11625622 11626122 -215898456 - L2 LINE L2 0 3272 2692 1668 160 0 24 chr3 11626124 11626411 -215898167 + AluJo SINE Alu 1 280 -32 204 40 0 0 chr3 11626411 11626436 -215898142 + (TAA)n Simple_repeat Simple_repeat 1 25 0 1976 125 0 3 chr3 11626596 11626914 -215897664 - AluSx SINE Alu 0 317 1 1136 240 79 31 chr3 11627280 11627734 -215896844 - MLT1K LTR MaLR 0 476 1 1414 168 52 18 chr3 11627806 11627922 -215896656 + AluJo SINE Alu 1 111 -201 498 17 0 0 chr3 11627922 11627981 -215896597 + (CA)n Simple_repeat Simple_repeat 2 60 0 1414 168 52 18 chr3 11627981 11628150 -215896428 + AluJo SINE Alu 111 296 -16 502 299 96 0 chr3 11628356 11628513 -215896065 + MIR SINE MIR 12 183 -79 578 211 149 19 chr3 11628654 11628815 -215895763 - MIR SINE MIR -18 244 63 369 265 117 41 chr3 11629268 11629611 -215894967 - L1MC5 LINE L1 -35 7926 7558 269 253 73 72 chr3 11629674 11629760 -215894818 - L1MC5 LINE L1 -519 7495 7411 1398 168 37 78 chr3 11629760 11630081 -215894497 - AluJb SINE Alu -1 311 4 269 253 73 72 chr3 11630081 11630900 -215893678 - L1MC5 LINE L1 -603 7411 6697 407 200 53 0 chr3 11630902 11630977 -215893601 - MIR SINE MIR -175 87 9 586 299 47 14 chr3 11631050 11631261 -215893317 - MIR SINE MIR -23 239 22 193 241 41 152 chr3 11631398 11631543 -215893035 - L2 LINE L2 -4 3268 3140 530 252 106 57 chr3 11632041 11632512 -215892066 - MLT1H LTR MaLR 0 549 12 1372 218 27 66 chr3 11632616 11632855 -215891723 + MLT1K LTR MaLR 196 414 -174 2098 108 13 7 chr3 11632855 11633162 -215891416 + AluSg SINE Alu 1 309 -1 1372 218 27 66 chr3 11633162 11633331 -215891247 + MLT1K LTR MaLR 414 588 0 219 240 0 20 chr3 11633434 11633484 -215891094 + L2 LINE L2 3265 3313 0 235 302 103 48 chr3 11633810 11633936 -215890642 + L2 LINE L2 2640 2772 -542 706 254 52 0 chr3 11633945 11634118 -215890460 - MIR SINE MIR 0 262 81 619 278 69 81 chr3 11634143 11634503 -215890075 + L2 LINE L2 2957 3312 -1 530 167 0 9 chr3 11634503 11634617 -215889961 + GA-rich Low_complexity Low_complexity 1 113 0 847 173 38 16 chr3 11634799 11634984 -215889594 + MER53 DNA DNA 1 189 0 261 227 34 23 chr3 11635529 11635617 -215888961 + CT-rich Low_complexity Low_complexity 1 89 0 2652 122 78 7 chr3 11635925 11636376 -215888202 - MER31A LTR ERV1 -2 483 1 228 354 42 0 chr3 11636537 11636633 -215887945 + MIR SINE MIR 107 206 -56 504 238 108 90 chr3 11637414 11637746 -215886832 - MER113 DNA MER1_type? -34 487 150 193 257 73 83 chr3 11637857 11637966 -215886612 + MIR SINE MIR 105 212 -50 570 239 102 11 chr3 11638098 11638274 -215886304 + MIR SINE MIR 13 204 -58 261 260 0 26 chr3 11638288 11638365 -215886213 + L2 LINE L2 3238 3312 -1 292 304 265 6 chr3 11638693 11638874 -215885704 - L3 LINE CR1 -2 1575 1348 429 196 65 36 chr3 11639490 11639628 -215884950 - L1ME4a LINE L1 -11 6110 5969 232 306 0 0 chr3 11639702 11639764 -215884814 + MIR SINE MIR 127 188 -74 415 155 0 0 chr3 11639818 11639889 -215884689 - L1ME4a LINE L1 -265 5856 5786 1733 158 34 0 chr3 11640075 11640372 -215884206 - AluJo SINE Alu -5 307 1 301 212 85 51 chr3 11640379 11640497 -215884081 - L1MC4a LINE L1 -1857 5951 5830 673 176 17 0 chr3 11640499 11640618 -215883960 - AluSg/x SINE Alu -6 306 186 185 279 202 0 chr3 11642289 11642393 -215882185 + MIR SINE MIR 132 256 -6 458 194 32 95 chr3 11642455 11642623 -215881955 - L1MB7 LINE L1 -1 6183 6018 1398 192 77 15 chr3 11642927 11643265 -215881313 - L1M4 LINE L1 -1349 4621 4263 1456 211 62 59 chr3 11643268 11643756 -215880822 - L1M4 LINE L1 -1812 4158 3670 2423 170 70 66 chr3 11643827 11644549 -215880029 + Tigger7 DNA MER2_type 3 2485 -2 415 266 176 63 chr3 11644762 11645172 -215879406 - L1M4 LINE L1 -5234 657 202 440 194 46 23 chr3 11647130 11647305 -215877273 + (TA)n Simple_repeat Simple_repeat 1 179 0 944 112 22 0 chr3 11647305 11647439 -215877139 + Tigger5 DNA MER2_type 2 138 -2185 601 121 11 0 chr3 11647431 11647522 -215877056 + Tigger5 DNA MER2_type 2232 2323 0 * 21 0 0 0 chr3 11647522 11647543 -215877035 + AT_rich Low_complexity Low_complexity 1 21 0 720 198 167 5 chr3 11647543 11647735 -215876843 + MIR SINE MIR 18 240 -22 441 130 0 26 chr3 11647744 11647821 -215876757 + MER116 DNA Mariner 6 80 0 1253 136 5 5 chr3 11648080 11648279 -215876299 + MLT1A2-int LTR MaLR 1537 1735 0 1525 215 25 25 chr3 11648283 11648641 -215875937 + MLT1A2 LTR MaLR 6 363 -11 7976 145 68 37 chr3 11648646 11650074 -215874504 - L1MCa LINE L1 -4315 2111 730 2045 100 4 18 chr3 11650074 11650353 -215874225 + AluSx SINE Alu 7 281 -31 185 0 40 0 chr3 11650363 11650388 -215874190 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 7976 145 68 37 chr3 11650388 11650876 -215873702 - L1MCa LINE L1 -5704 722 32 25 75 0 0 chr3 11651443 11651496 -215873082 + AT_rich Low_complexity Low_complexity 1 53 0 1373 143 90 23 chr3 11653413 11653691 -215870887 - L1MD3 LINE L1 -1114 6881 6616 4241 118 49 22 chr3 11653961 11654632 -215869946 - Tigger3(Golem) DNA MER2_type -1 3027 2333 2523 72 0 0 chr3 11654632 11654939 -215869639 + AluSc SINE Alu 1 307 -2 4241 118 49 22 chr3 11654939 11654998 -215869580 - Tigger3(Golem) DNA MER2_type -695 2333 2277 433 284 0 0 chr3 11654975 11655077 -215869501 - Tigger3(Golem) DNA MER2_type -2907 122 21 * 1221 177 148 23 chr3 11655192 11655497 -215869081 + MER2 DNA MER2_type 1 343 -1 516 203 7 20 chr3 11655713 11655866 -215868712 + CT-rich Low_complexity Low_complexity 4 154 0 860 179 0 0 chr3 11655878 11656012 -215868566 - FRAM SINE Alu -39 137 4 1453 243 69 6 chr3 11656033 11656540 -215868038 - L1MEc LINE L1 -2578 3637 3099 375 164 72 53 chr3 11656576 11656728 -215867850 - L1MEc LINE L1 -3197 3018 2864 489 282 145 31 chr3 11656729 11657307 -215867271 - L1MEc LINE L1 -5044 1352 709 419 350 32 59 chr3 11657631 11657904 -215866674 - L1MEc LINE L1 -6011 385 123 2304 157 55 0 chr3 11657904 11658306 -215866272 - MSTA LTR MaLR -4 424 1 419 350 32 59 chr3 11658306 11658406 -215866172 - L1MEc LINE L1 -6273 123 22 811 236 121 0 chr3 11659418 11659617 -215864961 + MER58A DNA MER1_type 2 224 0 23 97 0 0 chr3 11661250 11661322 -215863256 + AT_rich Low_complexity Low_complexity 1 72 0 334 256 12 0 chr3 11662606 11662692 -215861886 - MER103 DNA DNA -71 95 9 405 320 0 56 chr3 11663484 11663662 -215860916 + MER5A DNA MER1_type 15 182 -7 193 421 69 0 chr3 11664063 11664265 -215860313 + L2 LINE L2 2227 2442 -872 748 268 49 16 chr3 11664791 11665034 -215859544 + MIR SINE MIR 12 262 0 2082 261 118 29 chr3 11665189 11666892 -215857686 - L1ME3A LINE L1 -14 6156 4297 3283 201 65 49 chr3 11666920 11667278 -215857300 - L1ME1 LINE L1 -3 6557 6206 2298 89 0 0 chr3 11667278 11667595 -215856983 - AluSg SINE Alu 0 317 1 3283 201 65 49 chr3 11667595 11668757 -215855821 - L1ME1 LINE L1 -354 6206 5027 1356 251 73 27 chr3 11668951 11669469 -215855109 - L1ME1 LINE L1 -1537 5003 4462 588 207 152 0 chr3 11669618 11669816 -215854762 - L1ME1 LINE L1 -2070 4470 4243 3146 163 65 45 chr3 11669818 11670465 -215854113 - L1MB8 LINE L1 -2 6176 5512 2252 86 0 17 chr3 11670465 11670766 -215853812 + AluSx SINE Alu 2 297 -15 3146 163 65 45 chr3 11670766 11670830 -215853748 - L1MB8 LINE L1 -666 5512 5451 2133 245 99 27 chr3 11670889 11672329 -215852249 - L1ME1 LINE L1 -2737 3803 2302 43488 45 6 0 chr3 11672341 11678456 -215846122 - L1PA4 LINE L1 -1 6154 2 706 225 70 41 chr3 11678459 11678703 -215845875 - L1ME1 LINE L1 -4444 2277 2027 1544 166 61 14 chr3 11678759 11679036 -215845542 - AluJo SINE Alu -20 292 3 396 194 28 28 chr3 11679040 11679148 -215845430 - L1ME1 LINE L1 -4681 2040 1933 * 2756 264 76 60 chr3 11679136 11680100 -215844478 - L1MC4 LINE L1 0 8042 7046 2502 65 10 0 chr3 11680100 11680408 -215844170 - AluY SINE Alu 0 311 1 2756 264 76 60 chr3 11680408 11680860 -215843718 - L1MC4 LINE L1 -996 7046 6603 1648 202 30 8 chr3 11680908 11681274 -215843304 - L1ME1 LINE L1 -5279 1264 891 1087 277 72 57 chr3 11681444 11681969 -215842609 - L1ME1 LINE L1 -5573 967 19 2380 253 187 27 chr3 11681974 11682066 -215842512 - L1MCa LINE L1 -3660 3281 3205 2361 95 0 0 chr3 11682066 11682371 -215842207 - AluSq SINE Alu -8 305 1 2380 253 187 27 chr3 11682371 11683852 -215840726 - L1MCa LINE L1 -3736 3205 1447 881 276 14 14 chr3 11683964 11684185 -215840393 - L1MCa LINE L1 -5395 1028 808 726 295 54 76 chr3 11684290 11684524 -215840054 - L1MCa LINE L1 -5824 599 361 2553 59 0 0 chr3 11684524 11684827 -215839751 + AluY SINE Alu 1 303 -8 726 295 54 76 chr3 11684827 11685186 -215839392 - L1MCa LINE L1 -6062 361 19 2302 70 3 35 chr3 11685237 11685550 -215839028 - AluY SINE Alu -8 303 1 563 190 52 40 chr3 11685872 11686046 -215838532 - L1MC5 LINE L1 -53 7908 7733 590 212 15 0 chr3 11686513 11686650 -215837928 - L1MD3 LINE L1 -10 7985 7847 229 208 19 19 chr3 11687088 11687141 -215837437 + MIR3 SINE MIR 155 207 -1 28 61 0 0 chr3 11687749 11687798 -215836780 + AT_rich Low_complexity Low_complexity 1 49 0 185 302 0 0 chr3 11688636 11688679 -215835899 + L2 LINE L2 3263 3305 -8 1389 261 84 58 chr3 11689342 11689764 -215834814 - HAL1 LINE L1 -6 2501 2091 2271 57 23 27 chr3 11689764 11690064 -215834514 - AluY SINE Alu -12 299 1 1389 261 84 58 chr3 11690064 11690453 -215834125 - HAL1 LINE L1 -416 2091 1669 1165 68 125 6 chr3 11690464 11690640 -215833938 - MER30 DNA MER1_type -33 197 1 433 299 0 12 chr3 11690703 11690870 -215833708 - HAL1 LINE L1 -893 1614 1450 236 314 177 65 chr3 11690870 11691414 -215833164 + L2 LINE L2 2488 3087 -185 551 291 26 32 chr3 11691451 11691640 -215832938 - L2 LINE L2 0 3313 3126 1104 180 108 57 chr3 11691691 11692024 -215832554 - MLT1C LTR MaLR -2 465 116 687 253 37 60 chr3 11692024 11692353 -215832225 - HUERS-P2 LTR ERV1 -2258 830 4 406 212 68 48 chr3 11692549 11692695 -215831883 - LTR28 LTR ERV1 -465 555 407 497 257 123 12 chr3 11692793 11692964 -215831614 - LTR1 LTR ERV1 -568 217 28 439 164 0 0 chr3 11692967 11693040 -215831538 - Charlie1 DNA MER1_type -56 2705 2633 945 212 187 15 chr3 11693045 11693371 -215831207 + L1MEc LINE L1 40 421 -5975 735 139 16 0 chr3 11693378 11693500 -215831078 + L1M4 LINE L1 2777 2900 -3246 345 106 224 0 chr3 11693500 11693585 -215830993 - Charlie1 DNA MER1_type -112 2649 2546 399 272 37 31 chr3 11693618 11693780 -215830798 + L1MEc LINE L1 29 191 -6205 623 242 53 44 chr3 11693846 11694073 -215830505 - L2 LINE L2 -1392 1922 1694 850 237 42 19 chr3 11694103 11694318 -215830260 + MER112 DNA MER1_type 1 220 -40 722 319 68 11 chr3 11694360 11694711 -215829867 - L2 LINE L2 -1743 1571 1201 1736 174 82 27 chr3 11696073 11696476 -215828102 - LTR37A LTR ERV1 -1 425 1 2079 140 10 7 chr3 11697333 11697640 -215826938 - AluSx SINE Alu -4 308 1 883 135 24 0 chr3 11697645 11697771 -215826807 - AluSq/x SINE Alu -179 133 5 3466 190 61 23 chr3 11698548 11699299 -215825279 - L1MB4 LINE L1 0 6180 5401 27 29 0 0 chr3 11701097 11701131 -215823447 + AT_rich Low_complexity Low_complexity 1 34 0 366 80 0 0 chr3 11701971 11702021 -215822557 + (CA)n Simple_repeat Simple_repeat 2 51 0 2223 108 0 20 chr3 11702295 11702601 -215821977 - AluSx SINE Alu -12 300 1 190 248 55 128 chr3 11703826 11703935 -215820643 - MIR SINE MIR -117 145 45 334 303 163 20 chr3 11704490 11704741 -215819837 + L1MC4a LINE L1 5888 6174 -1634 2231 98 20 0 chr3 11705330 11705625 -215818953 + AluSx SINE Alu 1 301 -11 187 271 0 0 chr3 11705857 11705905 -215818673 + MIR SINE MIR 104 151 -111 1829 153 26 19 chr3 11706391 11706699 -215817879 + AluJo SINE Alu 1 310 -2 624 317 45 18 chr3 11707335 11707559 -215817019 - MIR SINE MIR -6 256 27 184 314 0 0 chr3 11708684 11708754 -215815824 - L2 LINE L2 -2526 788 719 242 29 29 0 chr3 11709287 11709322 -215815256 + (TA)n Simple_repeat Simple_repeat 2 37 0 460 205 116 0 chr3 11709351 11709463 -215815115 + MER106B DNA MER1_type 932 1056 -3 381 203 60 40 chr3 11709774 11709906 -215814672 - L1ME1 LINE L1 -141 6023 5884 1427 121 157 0 chr3 11710251 11710499 -215814079 - MER7A DNA MER2_type 0 346 62 655 335 102 18 chr3 11710512 11710947 -215813631 + L2 LINE L2 2682 3163 -109 587 229 117 32 chr3 11710992 11711180 -215813398 - MIR SINE MIR -58 204 1 559 301 7 13 chr3 11711572 11711725 -215812853 - MIR3 SINE MIR -21 187 36 1409 245 47 53 chr3 11712112 11712619 -215811959 - MER74B LTR ERVL -45 577 74 832 281 25 0 chr3 11712633 11712829 -215811749 + L1M4 LINE L1 347 547 -5995 184 277 0 21 chr3 11712892 11712939 -215811639 + MIR SINE MIR 100 145 -63 295 314 20 33 chr3 11712970 11713123 -215811455 + L2 LINE L2 2366 2516 -798 674 233 82 0 chr3 11713128 11713274 -215811304 - MER5A DNA MER1_type -1 188 31 201 297 16 0 chr3 11713591 11713655 -215810923 + L2 LINE L2 2921 2985 -287 334 114 43 57 chr3 11713760 11713830 -215810748 + L2 LINE L2 3245 3313 0 5747 147 13 16 chr3 11713942 11714868 -215809710 + MER49 LTR ERV1 1 923 0 1652 210 54 39 chr3 11715992 11716382 -215808196 + L1M4 LINE L1 10 405 -6137 * 2897 224 27 38 chr3 11716381 11717045 -215807533 + L1M4 LINE L1 341 997 -5545 594 259 48 48 chr3 11717051 11717402 -215807176 - L1MCa LINE L1 -5008 1933 1583 * 3008 247 98 48 chr3 11717398 11718690 -215805888 - L1MCa LINE L1 -5051 1372 17 216 0 0 0 chr3 11719318 11719342 -215805236 + (GTTTG)n Simple_repeat Simple_repeat 1 24 0 245 246 130 0 chr3 11720578 11720647 -215803931 - L2 LINE L2 -5 3267 3190 522 171 55 75 chr3 11720660 11720806 -215803772 + MER20 DNA MER1_type 1 143 -76 1450 169 75 52 chr3 11720811 11721160 -215803418 - MLT1B LTR MaLR 0 390 34 341 222 0 0 chr3 11721194 11721257 -215803321 + MER20 DNA MER1_type 154 216 -3 303 243 0 72 chr3 11722504 11722615 -215801963 + CT-rich Low_complexity Low_complexity 4 106 0 256 353 0 0 chr3 11722636 11722704 -215801874 - L2 LINE L2 -71 3201 3134 1352 172 57 102 chr3 11722878 11723232 -215801346 + MLT1A1 LTR MaLR 21 358 -7 405 70 0 0 chr3 11723414 11723471 -215801107 + (CA)n Simple_repeat Simple_repeat 2 58 0 481 271 58 16 chr3 11723519 11723707 -215800871 - L1ME LINE L1 -304 5817 5622 1434 140 68 5 chr3 11724023 11724244 -215800334 + MER46A DNA MER2_type 2 236 0 226 244 126 0 chr3 11725568 11725687 -215798891 + L1M4 LINE L1 2525 2658 -3986 261 259 333 0 chr3 11725701 11725848 -215798730 - MIR SINE MIR 0 262 67 192 224 66 79 chr3 11726452 11726528 -215798050 + MIR3 SINE MIR 94 168 -40 * 325 253 35 11 chr3 11726519 11726606 -215797972 - MIR3 SINE MIR -6 202 114 342 222 146 58 chr3 11727164 11727198 -215797380 + L2 LINE L2 708 738 -2576 1046 184 0 0 chr3 11727198 11727366 -215797212 - FAM SINE Alu -7 168 1 342 222 146 58 chr3 11727366 11727673 -215796905 + L2 LINE L2 738 1079 -2235 602 303 21 30 chr3 11727678 11727912 -215796666 + L2 LINE L2 2036 2267 -1047 239 182 57 102 chr3 11727942 11728030 -215796548 + LTR48B LTR ERV1 387 470 -174 605 207 106 28 chr3 11728047 11728226 -215796352 + L2 LINE L2 2258 2450 -864 183 42 0 0 chr3 11728383 11728407 -215796171 + (CAA)n Simple_repeat Simple_repeat 2 25 0 1886 104 41 11 chr3 11728905 11729008 -215795570 - L1M3 LINE L1 -588 5583 5485 291 28 0 0 chr3 11729008 11729044 -215795534 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1886 104 41 11 chr3 11729044 11729237 -215795341 - L1M3 LINE L1 -686 5485 5273 1208 297 55 27 chr3 11729237 11729482 -215795096 + L2 LINE L2 2462 2699 -614 2374 46 0 3 chr3 11729482 11729794 -215794784 + AluY SINE Alu 1 311 0 1208 297 55 27 chr3 11729794 11730374 -215794204 + L2 LINE L2 2699 3308 -5 345 303 38 15 chr3 11730401 11730533 -215794045 + L2 LINE L2 3134 3268 -4 364 291 48 0 chr3 11731347 11731450 -215793128 - MIR3 SINE MIR -18 190 83 221 342 40 13 chr3 11731527 11731603 -215792975 + MIR SINE MIR 68 145 -63 737 278 134 35 chr3 11731748 11732181 -215792397 - L1MC4a LINE L1 -188 5933 5660 333 62 0 0 chr3 11732181 11732229 -215792349 + (TG)n Simple_repeat Simple_repeat 1 48 0 737 278 134 35 chr3 11732229 11732350 -215792228 - L1MC4a LINE L1 -461 5660 5552 253 254 0 0 chr3 11732731 11732786 -215791792 - MIR3 SINE MIR -3 205 151 475 327 117 30 chr3 11732936 11733303 -215791275 + L3 LINE CR1 1174 1572 -5 670 185 123 0 chr3 11733387 11733517 -215791061 - Tigger5 DNA MER2_type 0 2323 2178 1910 205 82 23 chr3 11733563 11734037 -215790541 - MLT1D LTR MaLR 0 505 4 747 144 0 0 chr3 11734414 11734539 -215790039 + (CA)n Simple_repeat Simple_repeat 2 126 0 2190 117 7 7 chr3 11734707 11735016 -215789562 + AluSx SINE Alu 1 309 -3 630 311 34 8 chr3 11736000 11736238 -215788340 - LTR16B LTR ERVL 0 464 221 190 274 137 39 chr3 11736704 11736806 -215787772 - L2 LINE L2 -38 3234 3123 185 365 37 19 chr3 11737493 11737600 -215786978 + MIR3 SINE MIR 88 196 -12 2089 106 0 0 chr3 11737998 11738271 -215786307 - AluSg SINE Alu -37 273 1 2372 251 29 40 chr3 11738274 11738990 -215785588 - L1MEc LINE L1 -5579 817 110 334 119 0 90 chr3 11739026 11739093 -215785485 - MLT2B2 LTR ERVL -2 552 458 437 97 14 0 chr3 11739093 11739165 -215785413 + (TAGA)n Simple_repeat Simple_repeat 1 73 0 1953 189 109 22 chr3 11739168 11739580 -215784998 - MLT2B2 LTR ERVL -61 454 7 21667 150 20 9 chr3 11739582 11741241 -215783337 - ERVL-B2 LTR ERVL -3 5761 4122 2241 114 0 10 chr3 11741241 11741548 -215783030 + AluSx SINE Alu 1 304 -8 21667 150 20 9 chr3 11741548 11743994 -215780584 - ERVL-B2 LTR ERVL -1642 4122 1627 402 159 0 0 chr3 11744369 11744432 -215780146 - FLAM SINE Alu -7 126 64 234 278 287 0 chr3 11744659 11744774 -215779804 - MIR SINE MIR 0 262 115 331 277 0 0 chr3 11744774 11744857 -215779721 + L1MD3 LINE L1 7126 7208 -787 472 285 74 53 chr3 11744917 11745201 -215779377 + L3 LINE CR1 1251 1540 -37 976 268 57 69 chr3 11745544 11746036 -215778542 + MLT2F LTR ERVL 17 502 -161 495 190 0 30 chr3 11746098 11746198 -215778380 - FLAM_A SINE Alu -6 136 40 456 243 0 0 chr3 11746199 11746306 -215778272 + MLT2F LTR ERVL 547 653 -10 330 267 40 0 chr3 11746503 11746604 -215777974 + MIR SINE MIR 39 143 -119 1622 271 96 7 chr3 11746724 11747266 -215777312 - MLT1E LTR MaLR -3 590 1 193 294 44 44 chr3 11748188 11748324 -215776254 + MIR3 SINE MIR 56 191 -17 311 333 0 19 chr3 11748696 11748801 -215775777 - MER5B DNA MER1_type -45 133 31 569 262 17 29 chr3 11749025 11749197 -215775381 - MIR SINE MIR -73 189 20 468 104 0 39 chr3 11749352 11749429 -215775149 + MER31B LTR ERV1 1 74 -392 2194 110 20 0 chr3 11749480 11749781 -215774797 + AluSg SINE Alu 1 307 -3 300 111 0 0 chr3 11749783 11749828 -215774750 + (GGAA)n Simple_repeat Simple_repeat 2 46 0 2729 138 0 45 chr3 11749828 11750198 -215774380 + L1MA7 LINE L1 5772 6116 -175 1620 146 8 19 chr3 11750198 11750459 -215774119 + AluJo SINE Alu 42 299 -13 2729 138 0 45 chr3 11750459 11750579 -215773999 + L1MA7 LINE L1 6116 6240 -51 1050 191 14 9 chr3 11750579 11750794 -215773784 + AluJo SINE Alu 87 302 -10 389 95 0 0 chr3 11750795 11750858 -215773720 + L1MA7 LINE L1 6229 6291 0 1233 207 68 54 chr3 11750861 11751213 -215773365 + MER31B LTR ERV1 110 466 0 181 329 80 36 chr3 11751820 11751957 -215772621 - L2 LINE L2 -9 3263 3121 1077 251 109 29 chr3 11752359 11752773 -215771805 + MLT1L LTR MaLR 160 606 -9 21 36 0 0 chr3 11753769 11753797 -215770781 + AT_rich Low_complexity Low_complexity 1 28 0 659 281 107 8 chr3 11753979 11754232 -215770346 + MLT1L LTR MaLR 98 375 -240 181 383 49 0 chr3 11755033 11755114 -215769464 - L2 LINE L2 -50 3222 3138 1224 180 38 119 chr3 11755195 11755589 -215768989 - MLT1A1 LTR MaLR 0 365 4 579 265 7 7 chr3 11756516 11756652 -215767926 - L2 LINE L2 0 3313 3178 241 233 17 0 chr3 11756961 11757021 -215767557 + MER5B DNA MER1_type 7 67 -111 388 291 0 27 chr3 11757024 11757172 -215767406 - MER5B DNA MER1_type -34 144 1 2179 113 65 14 chr3 11757252 11757606 -215766972 - THE1C LTR MaLR -3 372 1 222 238 112 31 chr3 11757608 11757768 -215766810 + MER5A DNA MER1_type 1 189 0 457 228 198 25 chr3 11757885 11758047 -215766531 - MIR SINE MIR -41 221 32 2253 209 122 0 chr3 11759520 11760022 -215764556 + MER119 DNA MER1_type 3 565 -18 487 252 8 8 chr3 11760885 11761008 -215763570 + MIR SINE MIR 32 154 -108 362 202 109 59 chr3 11761137 11761256 -215763322 - MIR SINE MIR -41 167 43 1755 151 49 3 chr3 11761462 11761746 -215762832 + AluJo SINE Alu 1 297 -15 988 258 135 43 chr3 11762189 11762356 -215762222 - MLT1H LTR MaLR -15 534 384 2736 196 29 7 chr3 11762356 11762902 -215761676 + MER74A LTR ERVL 1 558 0 988 258 135 43 chr3 11762902 11763223 -215761355 - MLT1H LTR MaLR -165 384 1 228 311 39 19 chr3 11763235 11763338 -215761240 + MIR SINE MIR 84 188 -74 1369 139 42 0 chr3 11763470 11763685 -215760893 + AluJb SINE Alu 85 308 -4 348 280 128 45 chr3 11764601 11765001 -215759577 + LTR67 LTR ERVL 101 533 -24 217 254 51 0 chr3 11765130 11765189 -215759389 - MIR SINE MIR -73 189 128 872 271 58 27 chr3 11765198 11765526 -215759052 - L1ME LINE L1 -446 5724 5387 2165 101 37 17 chr3 11765540 11765838 -215758740 + AluSx SINE Alu 2 305 -7 4998 173 44 33 chr3 11765839 11767350 -215757228 - L1MC2 LINE L1 -55 6289 4761 1741 163 61 0 chr3 11767350 11767644 -215756934 - AluJb SINE Alu 0 312 1 4998 173 44 33 chr3 11767644 11767857 -215756721 - L1MC2 LINE L1 -1583 4761 4552 1695 247 125 72 chr3 11767857 11768187 -215756391 - L1ME LINE L1 -746 5400 5089 1109 176 88 0 chr3 11768187 11768391 -215756187 - MER58A DNA MER1_type -2 222 1 1695 247 125 72 chr3 11768391 11768403 -215756175 - L1ME LINE L1 -1057 5089 5079 914 150 56 94 chr3 11768403 11768616 -215755962 + MER3 DNA MER1_type 5 209 0 1695 247 125 72 chr3 11768616 11768992 -215755586 - L1ME LINE L1 -1067 5079 4724 417 39 0 0 chr3 11768992 11769043 -215755535 + (CA)n Simple_repeat Simple_repeat 1 51 0 1695 247 125 72 chr3 11769043 11769186 -215755392 - L1ME LINE L1 -1422 4724 4590 213 39 0 0 chr3 11769186 11769212 -215755366 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1526 159 46 32 chr3 11769214 11769497 -215755081 - AluJb SINE Alu -25 287 1 1695 247 125 72 chr3 11769497 11769759 -215754819 - L1ME LINE L1 -1556 4590 4343 1738 158 29 35 chr3 11769759 11770070 -215754508 - AluSx SINE Alu -3 309 1 1695 247 125 72 chr3 11770070 11770221 -215754357 - L1ME LINE L1 -1803 4343 4052 948 271 165 12 chr3 11770265 11770918 -215753660 - L1ME LINE L1 -2299 3847 3095 * 3189 230 75 18 chr3 11770915 11772021 -215752557 - L1ME3A LINE L1 0 6170 5003 2170 137 8 42 chr3 11772021 11772400 -215752178 - MER47A DNA MER2_type 0 366 1 841 163 105 77 chr3 11772436 11772645 -215751933 - MER20 DNA MER1_type -1 218 4 772 167 0 0 chr3 11772711 11772843 -215751735 - AluSq/x SINE Alu -180 133 2 720 232 110 57 chr3 11772855 11773209 -215751369 - L1ME3A LINE L1 -1949 4197 3825 35 0 0 0 chr3 11773437 11773472 -215751106 + AT_rich Low_complexity Low_complexity 1 35 0 892 66 0 25 chr3 11773715 11773837 -215750741 + AluY SINE Alu 193 311 0 524 288 139 24 chr3 11774055 11774472 -215750106 - L1ME2 LINE L1 -213 5951 5487 1948 266 96 54 chr3 11774578 11774632 -215749946 - L1ME2 LINE L1 -786 5360 5310 2324 177 115 13 chr3 11774632 11775100 -215749478 - MLT2B1 LTR ERVL 0 520 5 1948 266 96 54 chr3 11775100 11775158 -215749420 - L1ME2 LINE L1 -836 5310 5256 904 143 52 81 chr3 11775158 11775317 -215749261 + MER3 DNA MER1_type 2 155 -54 2043 127 3 7 chr3 11775317 11775609 -215748969 - AluSq SINE Alu -22 291 1 904 143 52 81 chr3 11775609 11775659 -215748919 + MER3 DNA MER1_type 155 205 -4 1948 266 96 54 chr3 11775659 11775999 -215748579 - L1ME2 LINE L1 -890 5256 4932 975 256 96 37 chr3 11775999 11776491 -215748087 - LTR33 LTR ERVL 0 521 1 1948 266 96 54 chr3 11776491 11777458 -215747120 - L1ME2 LINE L1 -1214 4932 3879 214 268 56 14 chr3 11777600 11777671 -215746907 + L2 LINE L2 3191 3264 -8 189 195 0 0 chr3 11778334 11778375 -215746203 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 275 250 12 12 chr3 11778433 11778513 -215746065 - L2 LINE L2 0 3272 3193 237 345 90 23 chr3 11778773 11778950 -215745628 - L2 LINE L2 -425 2889 2701 183 272 65 33 chr3 11779015 11779107 -215745471 - L2 LINE L2 -234 3038 2944 627 291 13 0 chr3 11779311 11779462 -215745116 + MIR3 SINE MIR 8 160 -48 729 232 221 79 chr3 11779792 11780087 -215744491 - MLT1H LTR MaLR 0 549 297 1569 182 67 12 chr3 11780087 11780433 -215744145 + MLT1A1 LTR MaLR 1 365 0 729 232 221 79 chr3 11780433 11780603 -215743975 - MLT1H LTR MaLR -252 297 18 329 311 75 66 chr3 11780641 11780975 -215743603 - MLT1H-int LTR MaLR -24 1347 1011 340 218 160 58 chr3 11781964 11782170 -215742408 - L2 LINE L2 -5 3308 3082 294 331 0 14 chr3 11782393 11782541 -215742037 + MIR3 SINE MIR 24 169 -39 201 292 223 0 chr3 11782909 11783039 -215741539 - MIR SINE MIR 0 262 104 233 287 11 11 chr3 11784492 11784579 -215739999 + MER5A DNA MER1_type 89 175 -14 1599 226 110 26 chr3 11784993 11785458 -215739120 - MLT1D LTR MaLR 0 505 2 285 310 55 14 chr3 11786003 11786148 -215738430 - L2 LINE L2 -965 2349 2199 2499 59 7 3 chr3 11786950 11787254 -215737324 - AluY SINE Alu -6 305 1 279 264 46 0 chr3 11789085 11789172 -215735406 - MIR SINE MIR -80 182 92 386 224 245 14 chr3 11789503 11789650 -215734928 - MIR SINE MIR -70 192 12 1857 158 20 3 chr3 11789783 11790087 -215734491 - AluSx SINE Alu -3 309 1 257 276 97 37 chr3 11790415 11790549 -215734029 - MIR SINE MIR -67 195 54 786 212 22 36 chr3 11792163 11792385 -215732193 - L1ME3 LINE L1 0 6162 5944 1148 236 25 55 chr3 11792406 11792576 -215732002 - L1ME2 LINE L1 -1 6958 6784 1831 107 7 77 chr3 11792576 11792875 -215731703 - AluSx SINE Alu -20 292 15 1148 236 25 55 chr3 11792875 11793065 -215731513 - L1ME2 LINE L1 -175 6784 6609 2085 239 23 18 chr3 11793366 11793969 -215730609 - L1ME2 LINE L1 -1305 5636 5031 2991 164 91 112 chr3 11793973 11795077 -215729501 - L1MB8 LINE L1 -6 6172 5089 943 249 72 0 chr3 11795079 11795344 -215729234 - L1ME2 LINE L1 -1904 5037 4754 6074 160 29 20 chr3 11795360 11796982 -215727596 - L1MC1 LINE L1 0 6333 4697 875 9 37 0 chr3 11797238 11797346 -215727232 + L1P LINE L1 5212 5323 -823 237 125 42 0 chr3 11797366 11797414 -215727164 - L1ME2 LINE L1 -2201 4740 4691 952 183 65 5 chr3 11797414 11797600 -215726978 - MER20 DNA MER1_type -22 197 1 2488 206 62 9 chr3 11797621 11798151 -215726427 + MLT1F1 LTR MaLR 10 567 0 400 207 0 58 chr3 11798152 11798239 -215726339 - L1ME2 LINE L1 -2290 4651 4570 402 21 0 0 chr3 11798256 11798303 -215726275 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 2328 272 58 51 chr3 11798309 11798408 -215726170 - L1ME2 LINE L1 -4153 2969 2872 315 0 0 0 chr3 11798408 11798443 -215726135 + (TG)n Simple_repeat Simple_repeat 2 36 0 2328 272 58 51 chr3 11798443 11799943 -215724635 - L1ME2 LINE L1 -4250 2872 1128 720 265 124 8 chr3 11799976 11800210 -215724368 - MER21B LTR ERV1 -586 277 17 634 326 16 22 chr3 11800369 11800685 -215723893 - L1ME2 LINE L1 -6015 408 95 270 0 0 0 chr3 11800721 11800751 -215723827 + (CA)n Simple_repeat Simple_repeat 1 30 0 2338 74 10 7 chr3 11800849 11801146 -215723432 - AluY SINE Alu -13 298 1 405 0 0 0 chr3 11801352 11801397 -215723181 + (CA)n Simple_repeat Simple_repeat 1 45 0 265 289 111 22 chr3 11801402 11801537 -215723041 - MER117 DNA MER1_type -50 147 1 607 193 36 153 chr3 11802050 11802299 -215722279 - L1MC5 LINE L1 -814 7147 6928 2252 110 3 0 chr3 11802349 11802648 -215721930 + AluSg SINE Alu 1 300 -10 389 316 24 52 chr3 11802746 11802958 -215721620 - MIR SINE MIR 0 262 57 3467 109 17 49 chr3 11803356 11803751 -215720827 - L1PB1 LINE L1 0 6151 5780 480 77 0 0 chr3 11803751 11803816 -215720762 + (TA)n Simple_repeat Simple_repeat 2 66 0 3467 109 17 49 chr3 11803816 11804015 -215720563 - L1PB1 LINE L1 -371 5780 5576 443 266 199 23 chr3 11804191 11804533 -215720045 + L2 LINE L2 1301 1702 -1612 894 284 129 41 chr3 11804546 11805236 -215719342 + L2 LINE L2 1971 2721 -593 293 270 116 7 chr3 11805334 11805500 -215719078 + MLT1G LTR MaLR 322 545 -45 395 318 177 23 chr3 11805621 11806011 -215718567 + L2 LINE L2 2844 3293 -20 478 272 101 6 chr3 11806075 11806233 -215718345 - MER5A DNA MER1_type -8 181 9 2319 82 16 7 chr3 11806429 11806733 -215717845 - AluY SINE Alu -4 307 1 184 306 14 0 chr3 11807480 11807552 -215717026 - MIR SINE MIR -78 130 58 199 261 42 31 chr3 11808229 11808383 -215716195 - MIR SINE MIR -10 252 56 227 111 0 22 chr3 11808550 11808595 -215715983 + (TTCC)n Simple_repeat Simple_repeat 2 45 0 2245 110 3 0 chr3 11808764 11808778 -215715800 - AluSx SINE Alu -11 301 289 198 0 0 0 chr3 11808778 11808800 -215715778 + (TTAAA)n Simple_repeat Simple_repeat 1 22 0 2245 110 3 0 chr3 11808800 11809085 -215715493 - AluSx SINE Alu -23 289 1 187 271 129 0 chr3 11809437 11809522 -215715056 + L2 LINE L2 2563 2658 -656 458 207 18 9 chr3 11809905 11810016 -215714562 + Charlie1a DNA MER1_type 45 156 -1299 13225 181 48 22 chr3 11810019 11810175 -215714403 + L1MB7 LINE L1 2197 2348 -3836 1440 221 14 0 chr3 11810175 11810460 -215714118 - AluJo SINE Alu -23 289 1 13225 181 48 22 chr3 11810460 11812034 -215712544 + L1MB7 LINE L1 2348 3881 -2303 275 71 24 0 chr3 11812034 11812076 -215712502 + (CA)n Simple_repeat Simple_repeat 2 44 0 13225 181 48 22 chr3 11812076 11814115 -215710463 + L1MB7 LINE L1 3881 6064 -120 1408 170 111 23 chr3 11814170 11814476 -215710102 - MLT1D LTR MaLR -46 459 127 467 93 0 53 chr3 11814477 11814552 -215710026 + AluSq/x SINE Alu 63 133 -180 1128 95 0 44 chr3 11814556 11814714 -215709864 - AluSq/x SINE Alu -162 151 1 436 303 142 0 chr3 11814714 11814876 -215709702 + MIR SINE MIR 63 247 -15 276 259 0 56 chr3 11814907 11815015 -215709563 + MIR SINE MIR 110 211 -51 188 288 45 30 chr3 11816103 11816169 -215708409 - L2 LINE L2 -39 3233 3167 215 301 161 42 chr3 11816388 11816624 -215707954 - L2 LINE L2 -496 2818 2555 295 192 151 0 chr3 11816705 11816778 -215707800 + MER45 DNA AcHobo 1 84 -956 6067 178 79 12 chr3 11816814 11817772 -215706806 - L1MA9 LINE L1 -10 6302 5409 333 0 0 0 chr3 11817772 11817809 -215706769 + (TG)n Simple_repeat Simple_repeat 2 38 0 6067 178 79 12 chr3 11817809 11818892 -215705686 - L1MA9 LINE L1 -903 5409 4127 308 218 81 35 chr3 11818908 11818995 -215705583 + L1MC4 LINE L1 6616 6706 -1336 192 185 19 37 chr3 11818997 11819105 -215705473 + (TA)n Simple_repeat Simple_repeat 1 106 0 2299 228 30 33 chr3 11819114 11819755 -215704823 - L1MA9 LINE L1 -3129 3017 2379 186 256 0 23 chr3 11820182 11820225 -215704353 - MIR SINE MIR -1 261 220 932 228 70 180 chr3 11820271 11820926 -215703652 + MLT1G1 LTR MaLR 11 593 -2 227 283 72 47 chr3 11820952 11821069 -215703509 - MIR SINE MIR -82 126 35 245 245 304 0 chr3 11821311 11821413 -215703165 + MIR3 SINE MIR 11 143 -65 296 260 24 81 chr3 11822729 11822852 -215701726 - L1MC/D LINE L1 -2171 5637 5522 236 261 29 0 chr3 11822975 11823044 -215701534 - L2 LINE L2 0 3313 3243 518 198 50 0 chr3 11823100 11823221 -215701357 - MIR3 SINE MIR 0 208 82 2229 104 0 3 chr3 11824060 11824348 -215700230 - AluSc SINE Alu -16 293 7 430 222 19 9 chr3 11824563 11824671 -215699907 + MIR SINE MIR 74 182 -80 190 121 30 0 chr3 11825346 11825379 -215699199 - L2 LINE L2 -252 3061 3028 3647 86 8 6 chr3 11826530 11827031 -215697547 + L1P4 LINE L1 5290 5791 -377 600 297 33 18 chr3 11827051 11827088 -215697490 + L1MA5 LINE L1 5751 5786 -514 840 85 23 11 chr3 11827088 11827265 -215697313 + (TA)n Simple_repeat Simple_repeat 2 180 0 600 297 33 18 chr3 11827265 11827503 -215697075 + L1MA5 LINE L1 5786 6030 -270 * 2749 71 33 0 chr3 11827267 11827632 -215696946 + L1PA10 LINE L1 5792 6168 0 2032 167 51 20 chr3 11827694 11828084 -215696494 + MLT2D LTR ERVL 1 402 -12 914 210 122 44 chr3 11828530 11828849 -215695729 + MER2 DNA MER2_type 1 344 0 623 75 0 0 chr3 11829096 11829176 -215695402 + MADE1 DNA Mariner 1 80 0 444 208 42 33 chr3 11829698 11829818 -215694760 - MIR3 SINE MIR -2 206 86 341 309 42 24 chr3 11833230 11833398 -215691180 + MIR SINE MIR 56 226 -36 283 197 13 0 chr3 11834548 11834624 -215689954 - MIR SINE MIR -69 139 63 185 320 39 39 chr3 11834828 11834931 -215689647 + MIR SINE MIR 44 146 -62 192 97 0 0 chr3 11836472 11836503 -215688075 + (TAA)n Simple_repeat Simple_repeat 2 32 0 304 279 29 10 chr3 11836993 11837097 -215687481 + MIR SINE MIR 85 190 -72 194 294 0 0 chr3 11837236 11837287 -215687291 + L2 LINE L2 3151 3201 -71 443 193 55 9 chr3 11838729 11838838 -215685740 - MIR SINE MIR -122 140 27 1017 200 4 74 chr3 11839211 11839441 -215685137 - MER20 DNA MER1_type -5 214 1 407 256 40 8 chr3 11839665 11839790 -215684788 + MER91C DNA MER1_type 9 137 -3 300 207 9 99 chr3 11841300 11841411 -215683167 - MER5A DNA MER1_type -80 109 9 24 32 0 0 chr3 11843055 11843086 -215681492 + AT_rich Low_complexity Low_complexity 1 31 0 222 258 124 77 chr3 11843160 11843341 -215681237 - MIR SINE MIR -61 147 1 320 267 19 16 chr3 11843513 11843714 -215680864 - LTR16A LTR ERVL -167 283 51 395 208 0 0 chr3 11843975 11844047 -215680531 + MIR SINE MIR 75 146 -62 192 312 56 69 chr3 11844288 11844519 -215680059 + L2 LINE L2 2721 2948 -366 652 169 214 0 chr3 11845543 11845697 -215678881 - MER5A DNA MER1_type -1 188 2 282 348 67 6 chr3 11846332 11846510 -215678068 + L2 LINE L2 2904 3092 -180 366 250 207 36 chr3 11846576 11846716 -215677862 - MIR SINE MIR -1 261 98 5357 177 39 3 chr3 11848009 11848105 -215676473 + L1MB7 LINE L1 4148 4239 -1945 267 31 0 0 chr3 11848105 11848137 -215676441 + (CA)n Simple_repeat Simple_repeat 1 32 0 5357 177 39 3 chr3 11848137 11849947 -215674631 + L1MB7 LINE L1 4239 6130 -54 181 292 69 14 chr3 11850960 11851032 -215673546 + MER5A DNA MER1_type 9 84 -105 306 311 95 20 chr3 11852106 11852254 -215672324 + MER5A DNA MER1_type 2 160 -29 294 293 143 34 chr3 11852682 11852829 -215671749 + MIR3 SINE MIR 1 163 -45 181 345 0 83 chr3 11853114 11853198 -215671380 - MIR3 SINE MIR -129 79 3 438 189 148 8 chr3 11853324 11853446 -215671132 + MER103 DNA DNA 9 147 -19 180 0 0 0 chr3 11853551 11853571 -215671007 + (TG)n Simple_repeat Simple_repeat 1 20 0 529 250 12 50 chr3 11854916 11854970 -215669608 - MER5A DNA MER1_type -19 170 116 2148 175 61 19 chr3 11854970 11855381 -215669197 - MSTA LTR MaLR 0 428 1 529 250 12 50 chr3 11855381 11855486 -215669092 - MER5A DNA MER1_type -73 116 17 226 196 43 0 chr3 11855519 11855565 -215669013 - MIR SINE MIR -97 111 64 305 307 53 9 chr3 11855731 11855845 -215668733 + MIR SINE MIR 73 191 -71 1537 84 0 80 chr3 11855870 11856095 -215668483 + AluY SINE Alu 96 302 -9 2729 118 47 2 chr3 11857126 11857533 -215667045 + MSTB LTR MaLR 1 425 -1 479 202 9 0 chr3 11857536 11857650 -215666928 + (TCCA)n Simple_repeat Simple_repeat 1 115 0 204 125 0 0 chr3 11857978 11858010 -215666568 + (TTC)n Simple_repeat Simple_repeat 2 33 0 203 360 12 12 chr3 11858730 11858816 -215665762 + MIR SINE MIR 52 137 -71 874 175 186 15 chr3 11858950 11859224 -215665354 + MER5C DNA MER1_type 4 324 0 530 227 57 17 chr3 11860023 11860223 -215664355 + MLT1F LTR MaLR 18 234 -321 750 210 81 56 chr3 11860360 11860629 -215663949 + MLT1F LTR MaLR 294 542 0 2147 121 0 23 chr3 11860734 11861040 -215663538 - AluSq SINE Alu -14 299 1 257 284 0 15 chr3 11861085 11861152 -215663426 + MER5A DNA MER1_type 87 152 -37 259 189 19 0 chr3 11861550 11861603 -215662975 + MER117 DNA MER1_type 115 168 -29 586 43 60 9 chr3 11862281 11862397 -215662181 + GA-rich Low_complexity Low_complexity 2 123 0 255 323 21 0 chr3 11862608 11862704 -215661874 + L2 LINE L2 3172 3269 -3 355 300 25 33 chr3 11863006 11863126 -215661452 - MIR3 SINE MIR -83 125 7 232 287 1 22 chr3 11863209 11863289 -215661289 + CT-rich Low_complexity Low_complexity 1 60 0 203 279 0 16 chr3 11863976 11864037 -215660541 - MIR SINE MIR -25 237 178 241 330 71 4 chr3 11864105 11864238 -215660340 - MIR SINE MIR -63 145 16 502 238 38 31 chr3 11864454 11864614 -215659964 - L2 LINE L2 -174 3098 2938 357 188 208 0 chr3 11864757 11864853 -215659725 + MER3 DNA MER1_type 53 168 -41 1476 203 51 8 chr3 11864854 11865224 -215659354 + MER3 DNA MER1_type 2239 2624 0 223 308 44 11 chr3 11865242 11865333 -215659245 - MER5A DNA MER1_type -89 100 7 1820 152 28 0 chr3 11865358 11865648 -215658930 + AluJb SINE Alu 1 298 -14 455 186 41 0 chr3 11866914 11867011 -215657567 + MIR SINE MIR 50 150 -58 229 276 56 140 chr3 11867540 11867790 -215656788 - L2 LINE L2 -52 3220 2992 247 342 60 48 chr3 11867867 11868136 -215656442 - L2 LINE L2 -432 2882 2611 417 294 83 73 chr3 11868144 11868471 -215656107 - MLT1J LTR MaLR -26 485 156 929 251 147 15 chr3 11868934 11869324 -215655254 + MLT1G3 LTR MaLR 75 530 0 238 247 233 14 chr3 11870398 11870471 -215654107 - MIR3 SINE MIR -9 199 111 215 288 61 0 chr3 11870511 11870577 -215654001 + MIR SINE MIR 76 145 -63 750 281 139 29 chr3 11870627 11870972 -215653606 + L3 LINE CR1 958 1340 -237 194 400 67 0 chr3 11871056 11871146 -215653432 + L3 LINE CR1 1371 1466 -111 815 174 5 102 chr3 11871361 11871557 -215653021 - MER58A DNA MER1_type -44 180 4 300 301 140 0 chr3 11872565 11872701 -215651877 - L2 LINE L2 -9 3263 3109 1346 178 157 78 chr3 11873047 11873263 -215651315 + MLT1C LTR MaLR 1 199 -268 405 39 0 0 chr3 11873263 11873314 -215651264 + (CA)n Simple_repeat Simple_repeat 2 52 0 1346 178 157 78 chr3 11873314 11873530 -215651048 + MLT1C LTR MaLR 199 467 0 991 178 213 0 chr3 11873555 11873785 -215650793 - MLT1D LTR MaLR 0 505 227 275 239 294 9 chr3 11874213 11874322 -215650256 + MIR SINE MIR 18 157 -105 2475 83 0 22 chr3 11874512 11874825 -215649753 + AluSx SINE Alu 1 306 -6 577 207 82 15 chr3 11874990 11875125 -215649453 + MER5B DNA MER1_type 35 178 0 1783 158 0 73 chr3 11876137 11876454 -215648124 - AluJb SINE Alu -18 294 1 272 320 0 0 chr3 11876971 11877046 -215647532 + L2 LINE L2 3239 3313 0 601 231 77 24 chr3 11877569 11877738 -215646840 + MIR SINE MIR 49 226 -36 2183 121 81 14 chr3 11877763 11878134 -215646444 - MSTA LTR MaLR -2 426 31 278 67 156 0 chr3 11878179 11878224 -215646354 - MSTA LTR MaLR -374 54 3 198 91 0 0 chr3 11878240 11878273 -215646305 + (T)n Simple_repeat Simple_repeat 1 33 0 40890 37 23 1 chr3 11878273 11884295 -215640283 - L1PA3 LINE L1 0 6155 1 1406 195 23 36 chr3 11884297 11884600 -215639978 - AluJo SINE Alu -13 299 1 236 324 0 0 chr3 11884779 11884850 -215639728 - MIR SINE MIR -138 124 54 331 281 42 0 chr3 11885479 11885575 -215639003 - MIR SINE MIR -99 163 64 967 249 127 44 chr3 11886001 11886451 -215638127 + LTR16C LTR ERVL 3 489 -2 933 195 123 0 chr3 11886660 11886855 -215637723 + MER20 DNA MER1_type 1 219 0 234 211 84 42 chr3 11887693 11887764 -215636814 - MER5A DNA MER1_type -76 113 40 1261 215 113 26 chr3 11888242 11888586 -215635992 - MLT1A2 LTR MaLR 0 374 1 994 251 39 4 chr3 11889047 11889278 -215635300 - MIR SINE MIR -3 259 21 304 302 65 14 chr3 11889299 11889438 -215635140 - MIR SINE MIR -97 165 20 216 260 0 0 chr3 11890084 11890134 -215634444 + L2 LINE L2 3261 3310 -3 887 199 35 0 chr3 11890840 11891011 -215633567 + MER5A DNA MER1_type 7 183 -6 290 320 45 22 chr3 11891143 11891321 -215633257 + MIR SINE MIR 21 202 -60 210 289 0 19 chr3 11891719 11891771 -215632807 + G-rich Low_complexity Low_complexity 5 55 0 321 298 114 44 chr3 11891939 11892483 -215632095 - L1ME4a LINE L1 -236 5885 5303 218 309 85 32 chr3 11893785 11893879 -215630699 + MIR SINE MIR 36 134 -74 224 282 27 64 chr3 11894368 11894478 -215630100 - MIR SINE MIR -66 196 91 214 367 25 17 chr3 11894683 11894803 -215629775 + MIR3 SINE MIR 4 124 -84 317 287 221 11 chr3 11895715 11895896 -215628682 + L1ME4a LINE L1 5769 5987 -134 462 271 188 1 chr3 11895973 11896207 -215628371 - Charlie8 DNA MER1_type -2246 171 1 360 353 29 0 chr3 11896207 11896343 -215628235 + L1ME4a LINE L1 5982 6121 0 246 236 37 143 chr3 11896450 11896611 -215627967 + MIR SINE MIR 109 252 -10 210 260 13 39 chr3 11896667 11896744 -215627834 + MIR SINE MIR 20 94 -168 271 346 13 0 chr3 11897439 11897517 -215627061 - MIR SINE MIR -30 232 154 595 262 64 0 chr3 11897612 11897784 -215626794 + LTR16C LTR ERVL 273 455 -36 466 198 129 106 chr3 11898097 11898314 -215626264 + SATR1 Satellite Satellite 143 364 -106 513 268 298 7 chr3 11898388 11898660 -215625918 + SATR1 Satellite Satellite 25 375 -95 1046 219 258 11 chr3 11898689 11899814 -215624764 + SATR1 Satellite Satellite 1 1402 -95 1195 220 228 25 chr3 11899851 11902073 -215622505 + SATR1 Satellite Satellite 1 2670 -4 740 240 318 3 chr3 11902104 11902450 -215622128 + SATR1 Satellite Satellite 12 466 -4 933 223 256 48 chr3 11902479 11903147 -215621431 + SATR1 Satellite Satellite 1 807 -1 1117 233 209 44 chr3 11903171 11904087 -215620491 + SATR1 Satellite Satellite 1 1067 -1 261 214 48 71 chr3 11904115 11904199 -215620379 + SATR1 Satellite Satellite 342 423 -47 247 266 174 60 chr3 11904216 11904618 -215619960 - SATR1 Satellite Satellite -10 460 13 * 1229 197 264 15 chr3 11904264 11904787 -215619791 + SATR1 Satellite Satellite 1 652 -1 957 227 330 9 chr3 11904872 11905541 -215619037 + SATR1 Satellite Satellite 1 883 -3 977 213 215 82 chr3 11905580 11906383 -215618195 + SATR1 Satellite Satellite 1 910 -8 3011 232 25 44 chr3 11906745 11906995 -215617583 - L1MB3 LINE L1 -30 6153 5900 1937 145 0 0 chr3 11906995 11907299 -215617279 - AluSx SINE Alu -8 304 1 3011 232 25 44 chr3 11907299 11907404 -215617174 - L1MB3 LINE L1 -283 5900 5795 192 111 0 0 chr3 11907404 11907440 -215617138 + (TTTTG)n Simple_repeat Simple_repeat 5 40 0 1778 139 0 4 chr3 11907446 11907720 -215616858 - AluSx SINE Alu -33 279 7 3011 232 25 44 chr3 11907720 11908717 -215615861 - L1MB3 LINE L1 -393 5790 4818 1996 120 3 3 chr3 11908755 11909063 -215615515 + AluSp SINE Alu 1 308 -5 1378 202 3 82 chr3 11909143 11909350 -215615228 - L1MA4 LINE L1 -170 6130 5967 1624 167 0 4 chr3 11909350 11909631 -215614947 - AluSx SINE Alu -32 280 1 1378 202 3 82 chr3 11909631 11909814 -215614764 - L1MA4 LINE L1 -333 5967 5771 283 210 133 63 chr3 11909856 11909999 -215614579 + HsTC2 DNA Tc2 1633 1785 -113 1672 127 6 83 chr3 11910004 11910343 -215614235 + AluSp SINE Alu 1 313 0 180 0 0 0 chr3 11910517 11910537 -215614041 + (A)n Simple_repeat Simple_repeat 1 20 0 389 228 97 9 chr3 11910537 11910651 -215613927 + MER5B DNA MER1_type 50 173 -5 771 227 40 0 chr3 11910755 11910953 -215613625 - MER6B DNA MER2_type 0 210 5 1410 104 23 14 chr3 11912847 11913067 -215611511 + AluSq SINE Alu 1 222 -91 1007 197 289 22 chr3 11913071 11913529 -215611049 + SATR1 Satellite Satellite 1 580 -1 1352 176 239 24 chr3 11913552 11913932 -215610646 + SATR1 Satellite Satellite 7 468 -2 547 262 169 62 chr3 11913946 11914236 -215610342 + SATR1 Satellite Satellite 148 468 -2 1902 175 96 75 chr3 11914273 11914915 -215609663 + SATR1 Satellite Satellite 1 655 -1 2385 183 115 10 chr3 11914948 11916560 -215608018 + SATR1 Satellite Satellite 1 1781 -27 13787 94 12 19 chr3 11916560 11918497 -215606081 - HERVE LTR ERV1 -2641 5172 3249 1418 229 98 53 chr3 11919124 11920018 -215604560 + SATR1 Satellite Satellite 1 934 -19 4392 92 3 8 chr3 11920082 11920683 -215603895 - HERVE LTR ERV1 -3967 3846 3249 1462 229 112 39 chr3 11920747 11921630 -215602948 + SATR1 Satellite Satellite 1 947 -112 4521 79 2 13 chr3 11921701 11922306 -215602272 - HERVE LTR ERV1 -3967 3846 3249 1497 207 104 48 chr3 11922755 11923414 -215601164 + SATR1 Satellite Satellite 1 696 -131 19349 102 13 9 chr3 11923425 11926154 -215598424 - HERVE LTR ERV1 -3967 3846 1108 23 0 0 0 chr3 11926387 11926410 -215598168 + AT_rich Low_complexity Low_complexity 1 23 0 2254 231 178 47 chr3 11926501 11929261 -215595317 + SATR1 Satellite Satellite 1 3120 -125 1678 122 0 0 chr3 11929261 11929499 -215595079 - HERVE LTR ERV1 -6589 1224 987 2585 225 76 25 chr3 11929502 11930308 -215594270 - L1MC4a LINE L1 -118 7690 6844 370 202 10 19 chr3 11930474 11930578 -215594000 + CT-rich Low_complexity Low_complexity 4 106 0 29 47 0 0 chr3 11931439 11931482 -215593096 + AT_rich Low_complexity Low_complexity 1 43 0 237 152 0 22 chr3 11931482 11931528 -215593050 - Alu SINE Alu -13 307 263 1691 181 131 0 chr3 11931613 11931950 -215592628 + MER21B LTR ERV1 1 381 -482 235 167 48 0 chr3 11931950 11931992 -215592586 + MER41B LTR ERV1 1 44 -591 2656 170 18 13 chr3 11932019 11932520 -215592058 + MER41B LTR ERV1 100 466 -12 2290 166 19 26 chr3 11932549 11932966 -215591612 + MER21A LTR ERV1 515 928 -3 235 258 137 16 chr3 11932991 11933115 -215591463 + LTR16A1 LTR ERVL 319 457 0 410 276 14 35 chr3 11934185 11934330 -215590248 + CT-rich Low_complexity Low_complexity 2 143 0 310 326 56 14 chr3 11934785 11934929 -215589649 + MIR3 SINE MIR 3 152 -56 350 312 81 41 chr3 11936198 11936419 -215588159 + MIR SINE MIR 2 231 -31 308 287 11 0 chr3 11936977 11937064 -215587514 - MIR SINE MIR -48 214 127 1935 190 72 27 chr3 11937229 11937379 -215587199 + LTR40b LTR ERVL 1 143 -319 1918 171 48 14 chr3 11937379 11937730 -215586848 - THE1B LTR MaLR 0 364 2 1935 190 72 27 chr3 11937730 11938021 -215586557 + LTR40b LTR ERVL 143 462 0 191 277 34 74 chr3 11938185 11938333 -215586245 - L2 LINE L2 -237 3035 2894 464 294 134 24 chr3 11938540 11938598 -215585980 + LTR33 LTR ERVL 106 156 -365 3490 105 85 11 chr3 11938598 11939152 -215585426 - LTR61 LTR ERV1 0 595 1 464 294 134 24 chr3 11939152 11939385 -215585193 + LTR33 LTR ERVL 156 429 -92 216 368 47 0 chr3 11939542 11939648 -215584930 + L2 LINE L2 2954 3064 -208 187 133 44 0 chr3 11939786 11939831 -215584747 + (TGGA)n Simple_repeat Simple_repeat 4 50 0 218 241 55 76 chr3 11940009 11940154 -215584424 - L2 LINE L2 -165 3107 2966 703 283 64 21 chr3 11940387 11940620 -215583958 + MIR SINE MIR 20 262 0 180 0 0 0 chr3 11940647 11940667 -215583911 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 469 271 119 19 chr3 11941277 11941487 -215583091 - MIR SINE MIR -12 250 20 213 216 0 0 chr3 11941769 11941806 -215582772 + polypyrimidine Low_complexity Low_complexity 2 38 0 230 241 98 60 chr3 11941867 11942000 -215582578 + L2 LINE L2 2966 3103 -169 189 247 0 82 chr3 11942060 11942145 -215582433 + L2 LINE L2 3128 3205 -67 1871 137 0 17 chr3 11942337 11942658 -215581920 + AluSx SINE Alu 1 312 0 754 235 12 6 chr3 11942705 11942867 -215581711 + MIR SINE MIR 35 197 -65 241 278 134 0 chr3 11942891 11942988 -215581590 + L2 LINE L2 3156 3265 -7 198 143 0 0 chr3 11943379 11943414 -215581164 + (TC)n Simple_repeat Simple_repeat 2 36 0 511 269 96 40 chr3 11944969 11945218 -215579360 + L1MC4a LINE L1 5627 5889 -1919 1546 202 35 26 chr3 11945228 11945570 -215579008 + MLT1A2 LTR MaLR 30 374 0 668 241 28 77 chr3 11945570 11945856 -215578722 + L1ME3A LINE L1 5899 6170 0 230 227 15 45 chr3 11946306 11946372 -215578206 + L3 LINE CR1 1509 1572 -5 484 298 32 50 chr3 11946649 11946867 -215577711 - L2 LINE L2 -124 3148 2935 200 175 50 0 chr3 11948020 11948060 -215576518 + MIR SINE MIR 83 124 -84 449 272 72 8 chr3 11948090 11948215 -215576363 + MIR3 SINE MIR 43 175 -33 1386 281 132 36 chr3 11949122 11950215 -215574363 - L2 LINE L2 0 3313 2087 545 271 31 35 chr3 11950327 11950556 -215574022 - LTR16A LTR ERVL 0 450 223 544 259 96 18 chr3 11951281 11951447 -215573131 + MIR SINE MIR 28 206 -56 581 152 29 0 chr3 11951979 11952084 -215572494 - ERVL LTR ERVL -1937 3827 3720 202 281 47 31 chr3 11952332 11952396 -215572182 - L3 LINE CR1 -294 1283 1219 183 286 0 0 chr3 11952599 11952641 -215571937 - L2 LINE L2 -8 3305 3264 220 271 43 0 chr3 11954497 11954567 -215570011 + MIR SINE MIR 126 198 -64 610 290 0 7 chr3 11955566 11955711 -215568867 + MIR3 SINE MIR 2 145 -63 348 333 122 24 chr3 11956210 11956423 -215568155 + MIR SINE MIR 23 256 -6 436 303 236 12 chr3 11957012 11957266 -215567312 - L3 LINE CR1 -80 1497 1187 226 350 82 21 chr3 11958229 11958326 -215566252 - L2 LINE L2 -46 3226 3124 267 239 14 14 chr3 11958890 11958961 -215565617 + CT-rich Low_complexity Low_complexity 4 74 0 211 324 54 27 chr3 11959075 11959223 -215565355 - L2 LINE L2 -485 2829 2678 1087 188 43 4 chr3 11959306 11959540 -215565038 - L1MB3 LINE L1 -2 6181 5939 277 287 52 59 chr3 11960075 11960211 -215564367 + MIR3 SINE MIR 12 146 -62 322 256 0 12 chr3 11961506 11961588 -215562990 + MER58A DNA MER1_type 1 81 -26 315 0 0 0 chr3 11961696 11961731 -215562847 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 249 186 57 145 chr3 11961943 11962067 -215562511 + MIR SINE MIR 33 145 -117 417 209 0 11 chr3 11962298 11962389 -215562189 - Tigger5 DNA MER2_type 0 2323 2234 230 236 0 0 chr3 11962394 11962449 -215562129 - Tigger5 DNA MER2_type -2130 193 139 222 323 129 0 chr3 11971094 11971218 -215553360 + MIR SINE MIR 2 141 -121 511 227 8 59 chr3 11971241 11971360 -215553218 - L2 LINE L2 0 3313 3201 212 152 0 0 chr3 11971447 11971480 -215553098 - MER91B DNA MER1_type -127 63 31 234 296 0 26 chr3 11971487 11971602 -215552976 - L2 LINE L2 -119 3194 3083 * 262 221 78 39 chr3 11971599 11971676 -215552902 + MIR SINE MIR 169 248 -14 321 281 53 9 chr3 11971689 11971803 -215552775 - MIR SINE MIR -64 198 80 250 351 54 12 chr3 11972105 11972273 -215552305 - L2 LINE L2 -225 3047 2873 261 244 67 22 chr3 11973744 11973834 -215550744 - MER20B DNA MER1_type -604 179 86 357 371 84 6 chr3 11974608 11974775 -215549803 + L2 LINE L2 3078 3257 -15 2370 110 7 0 chr3 11974781 11975089 -215549489 + AluSg SINE Alu 1 310 0 1526 234 8 19 chr3 11975250 11975617 -215548961 - MLT1A2 LTR MaLR -11 363 1 357 233 123 0 chr3 11975800 11975873 -215548705 - MIR SINE MIR -158 104 23 540 270 45 50 chr3 11976758 11976958 -215547620 + MIR SINE MIR 14 212 -50 935 279 75 19 chr3 11977053 11977466 -215547112 + MLT1K LTR MaLR 39 474 -114 492 184 0 44 chr3 11977607 11977721 -215546857 - L1MB8 LINE L1 0 6178 6070 744 137 22 38 chr3 11977744 11977927 -215546651 + CT-rich Low_complexity Low_complexity 1 180 0 202 182 0 0 chr3 11977927 11977960 -215546618 + polypyrimidine Low_complexity Low_complexity 4 36 0 1511 203 47 40 chr3 11977960 11977973 -215546605 - L1MB5 LINE L1 -101 6073 6062 1824 160 13 26 chr3 11977973 11978280 -215546298 - AluJo SINE Alu -9 303 1 1511 203 47 40 chr3 11978280 11978691 -215545887 - L1MB5 LINE L1 -112 6062 5650 521 358 23 23 chr3 11979536 11979796 -215544782 + MIR SINE MIR 1 260 -2 434 90 45 0 chr3 11980309 11980376 -215544202 - MSTB LTR MaLR -5 427 358 564 175 132 9 chr3 11980376 11980490 -215544088 + FLAM_C SINE Alu 2 129 -14 1429 171 122 0 chr3 11980492 11980779 -215543799 - MSTB LTR MaLR -68 358 37 279 333 101 32 chr3 11980813 11981002 -215543576 - MIR SINE MIR -40 222 21 204 194 0 90 chr3 11981185 11981252 -215543326 - MIR SINE MIR -143 119 59 266 233 83 30 chr3 11981643 11981776 -215542802 + L1ME4a LINE L1 5910 6049 -72 * 969 180 29 57 chr3 11981773 11981852 -215542726 + L1MB2 LINE L1 5933 6013 -158 2538 74 0 3 chr3 11981852 11982164 -215542414 - AluY SINE Alu 0 311 1 969 180 29 57 chr3 11982164 11982329 -215542249 + L1MB2 LINE L1 6013 6170 -1 433 360 47 38 chr3 11982354 11982688 -215541890 + L2 LINE L2 2772 3110 -162 2963 110 17 5 chr3 11982745 11983163 -215541415 + MSTA LTR MaLR 5 427 -1 857 77 8 0 chr3 11983610 11983727 -215540851 + MER20 DNA MER1_type 30 147 -72 922 280 93 51 chr3 11983727 11984306 -215540272 - L2 LINE L2 -50 3263 2639 1268 158 38 0 chr3 11984306 11984515 -215540063 + MER20 DNA MER1_type 3 219 0 922 280 93 51 chr3 11984515 11984633 -215539945 - L2 LINE L2 -674 2639 2527 2176 133 0 0 chr3 11985459 11985753 -215538825 + AluSx SINE Alu 1 294 -18 252 331 88 0 chr3 11986334 11986482 -215538096 - MER103 DNA DNA -5 161 1 284 223 138 43 chr3 11986916 11987010 -215537568 - L2 LINE L2 -8 3305 3203 240 313 0 12 chr3 11987032 11987112 -215537466 + MIR3 SINE MIR 98 176 -32 389 319 40 12 chr3 11987416 11987582 -215536996 + MIR SINE MIR 35 204 -58 1628 169 27 113 chr3 11987985 11988159 -215536419 + MLT1A2 LTR MaLR 1 122 -252 1868 151 10 13 chr3 11988159 11988463 -215536115 + AluJb SINE Alu 3 305 -7 1628 169 27 113 chr3 11988463 11988695 -215535883 + MLT1A2 LTR MaLR 122 372 -2 2108 113 0 0 chr3 11988722 11989025 -215535553 + AluSx SINE Alu 7 309 0 2051 160 7 0 chr3 11989055 11989348 -215535230 - AluJo SINE Alu -17 295 1 266 300 110 52 chr3 11989385 11989717 -215534861 - L2 LINE L2 -42 3230 2874 2393 105 0 0 chr3 11989717 11990012 -215534566 + AluSx SINE Alu 2 296 -16 266 300 110 52 chr3 11990012 11990042 -215534536 - L2 LINE L2 -398 2874 2847 680 241 113 55 chr3 11990154 11990428 -215534150 + Charlie8 DNA MER1_type 1 275 -2142 640 391 36 16 chr3 11990932 11991295 -215533283 + L3 LINE CR1 66 435 -1142 407 296 70 14 chr3 11991319 11991461 -215533117 + L3 LINE CR1 968 1117 -460 585 224 46 33 chr3 11991502 11991654 -215532924 + Charlie8 DNA MER1_type 123 276 -2141 551 220 58 94 chr3 11991885 11992005 -215532573 + L3 LINE CR1 1265 1375 -202 2132 143 0 0 chr3 11992005 11992305 -215532273 + AluSx SINE Alu 1 300 -12 551 220 58 94 chr3 11992305 11992407 -215532171 + L3 LINE CR1 1375 1479 -98 361 247 75 58 chr3 11992899 11993073 -215531505 + MIR SINE MIR 84 260 -2 26 0 0 0 chr3 11993505 11993531 -215531047 + AT_rich Low_complexity Low_complexity 1 26 0 233 262 0 8 chr3 11995642 11995764 -215528814 + (CA)n Simple_repeat Simple_repeat 1 121 0 687 306 43 25 chr3 11996497 11996821 -215527757 - MLT1K LTR MaLR -220 368 39 540 271 43 50 chr3 11996916 11997127 -215527451 - MIR SINE MIR -50 212 1 328 214 129 0 chr3 11998002 11998072 -215526506 + MIR SINE MIR 23 101 -161 1625 232 8 19 chr3 11998258 11998625 -215525953 + MLT1A2 LTR MaLR 1 363 -11 2321 114 7 0 chr3 11998786 11999094 -215525484 - AluSg SINE Alu 0 310 1 511 362 46 40 chr3 11999100 11999423 -215525155 - L2 LINE L2 -15 3257 2933 238 352 58 28 chr3 11999854 12000215 -215524363 + L2 LINE L2 2566 2937 -377 1507 149 6 94 chr3 12000372 12000700 -215523878 - AluJo SINE Alu -13 299 1 806 224 6 0 chr3 12000767 12000932 -215523646 + MER3 DNA MER1_type 7 125 -84 32527 102 9 67 chr3 12000940 12007482 -215517096 + L1PA7 LINE L1 1 6154 0 399 274 80 0 chr3 12007532 12007645 -215516933 + L2 LINE L2 3191 3312 -1 203 125 21 21 chr3 12007727 12007775 -215516803 + T-rich Low_complexity Low_complexity 1 48 0 180 0 0 0 chr3 12008010 12008030 -215516548 + (TCC)n Simple_repeat Simple_repeat 2 21 0 181 342 39 32 chr3 12008931 12009086 -215515492 - MIR SINE MIR -13 249 94 386 217 17 43 chr3 12009108 12009223 -215515355 + MLT1E LTR MaLR 283 394 -199 1009 174 73 108 chr3 12009223 12009646 -215514932 + MLT1A2 LTR MaLR 1 390 0 858 204 0 58 chr3 12009654 12009860 -215514718 + MLT1E LTR MaLR 400 593 0 326 227 59 59 chr3 12010095 12010214 -215514364 + MIR3 SINE MIR 5 123 -85 376 150 25 0 chr3 12010969 12011049 -215513529 + GA-rich Low_complexity Low_complexity 3 84 0 750 207 95 0 chr3 12011062 12011231 -215513347 - MER5A DNA MER1_type -4 185 1 1181 217 34 0 chr3 12011420 12011683 -215512895 + L1ME2 LINE L1 5893 6164 0 221 148 19 37 chr3 12011717 12011771 -215512807 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 2021 133 3 3 chr3 12012156 12012457 -215512121 + AluSx SINE Alu 1 301 -11 452 279 97 20 chr3 12012457 12012775 -215511803 + LTR16A LTR ERVL 75 444 -6 3774 153 29 43 chr3 12013341 12014103 -215510475 - L1MB3 LINE L1 -2 6181 5431 1979 129 3 17 chr3 12014103 12014397 -215510181 - MER1B DNA MER1_type -4 335 46 2922 183 16 11 chr3 12014410 12015070 -215509508 - L1MB3 LINE L1 -736 5444 4779 332 349 39 0 chr3 12015144 12015273 -215509305 + L2 LINE L2 3125 3258 -14 333 259 0 23 chr3 12015453 12015566 -215509012 - LTR1B LTR ERV1 -37 983 675 1206 119 0 23 chr3 12015671 12015716 -215508862 - AluSq SINE Alu -136 177 133 2325 93 16 7 chr3 12015716 12016026 -215508552 - AluSq SINE Alu 0 313 1 1206 119 0 23 chr3 12016026 12016157 -215508421 - AluSq SINE Alu -180 133 5 25 0 0 0 chr3 12016220 12016245 -215508333 + AT_rich Low_complexity Low_complexity 1 25 0 1469 160 95 0 chr3 12016253 12016516 -215508062 + AluJb SINE Alu 1 288 -24 194 305 62 23 chr3 12017623 12017751 -215506827 - L2 LINE L2 -1293 2021 1889 2249 121 0 0 chr3 12017822 12018129 -215506449 - AluSx SINE Alu -5 307 1 244 164 36 0 chr3 12019074 12019129 -215505449 + G-rich Low_complexity Low_complexity 1 57 0 239 85 17 51 chr3 12019277 12019336 -215505242 + (TTC)n Simple_repeat Simple_repeat 1 57 0 770 196 0 0 chr3 12019355 12019488 -215505090 - FLAM_C SINE Alu 0 133 1 1023 236 115 55 chr3 12019610 12019754 -215504824 - L2 LINE L2 0 3313 3179 2142 109 7 0 chr3 12019754 12020039 -215504539 - AluSx SINE Alu -15 297 11 1023 236 115 55 chr3 12020039 12020060 -215504518 - L2 LINE L2 -134 3179 3161 2000 119 48 14 chr3 12020060 12020355 -215504223 - AluSx SINE Alu -7 305 1 1023 236 115 55 chr3 12020355 12020740 -215503838 - L2 LINE L2 -152 3161 2707 1831 169 0 22 chr3 12020740 12021059 -215503519 - AluJo SINE Alu 0 312 1 1023 236 115 55 chr3 12021059 12021106 -215503472 - L2 LINE L2 -606 2707 2664 2290 90 0 13 chr3 12021305 12021638 -215502940 + AluSx SINE Alu 1 312 0 1599 231 12 6 chr3 12022000 12022338 -215502240 + MER58B DNA MER1_type 1 340 -1 2308 112 0 0 chr3 12022578 12022874 -215501704 - AluSx SINE Alu -16 296 1 513 306 92 54 chr3 12022881 12023437 -215501141 - MLT1L LTR MaLR 0 615 39 302 324 29 0 chr3 12023589 12023694 -215500884 + MIR SINE MIR 42 149 -59 234 240 0 0 chr3 12023802 12023852 -215500726 + L2 LINE L2 3264 3313 0 1820 159 14 0 chr3 12023888 12024183 -215500395 - AluJb SINE Alu -13 299 1 313 235 79 107 chr3 12024441 12024848 -215499730 - MLT1H LTR MaLR -14 535 11 308 286 38 23 chr3 12025403 12025570 -215499008 - HAL1b LINE L1 -2 6119 1222 2287 108 0 0 chr3 12025601 12025889 -215498689 - AluSx SINE Alu -24 288 1 228 235 86 0 chr3 12025910 12025991 -215498587 - L1ME LINE L1 -365 5797 5710 702 174 0 0 chr3 12026490 12026599 -215497979 + FLAM_C SINE Alu 2 110 -33 222 274 47 105 chr3 12026679 12026869 -215497709 + MIR SINE MIR 76 254 -8 1218 181 185 8 chr3 12027792 12028051 -215496527 - AluSg1 SINE Alu -4 305 1 198 0 0 0 chr3 12028307 12028329 -215496249 + (TTA)n Simple_repeat Simple_repeat 2 23 0 2296 114 0 0 chr3 12028331 12028637 -215495941 - AluSx SINE Alu -6 306 1 728 142 40 114 chr3 12029495 12029577 -215495001 - MER46A DNA MER2_type -2522 209 145 2336 96 3 0 chr3 12029577 12029880 -215494698 - AluSg SINE Alu -6 304 1 728 142 40 114 chr3 12029880 12029973 -215494605 - MER46A DNA MER2_type -2586 145 47 374 220 50 40 chr3 12030290 12030390 -215494188 + L2 LINE L2 3168 3268 -4 358 303 86 13 chr3 12030398 12030550 -215494028 - MIR SINE MIR -50 212 50 285 266 64 37 chr3 12031795 12031904 -215492674 - MIR3 SINE MIR -92 116 5 2000 132 0 4 chr3 12032143 12032424 -215492154 + AluJb SINE Alu 18 297 -15 7455 50 0 3 chr3 12032650 12033990 -215490588 + L1PA6 LINE L1 4820 6154 0 191 0 0 94 chr3 12034004 12034036 -215490542 + (A)n Simple_repeat Simple_repeat 1 29 0 715 273 32 10 chr3 12034085 12034364 -215490214 + LTR16B LTR ERVL 88 462 -2 224 271 24 0 chr3 12034405 12034490 -215490088 + MIR SINE MIR 161 247 -15 242 297 68 8 chr3 12035132 12035250 -215489328 - L2 LINE L2 -5 3267 3143 235 271 82 0 chr3 12035548 12035633 -215488945 + MIR SINE MIR 118 209 -53 382 260 20 0 chr3 12035722 12035822 -215488756 + MIR SINE MIR 156 257 -5 291 264 0 0 chr3 12035969 12036041 -215488537 - MER34 LTR ERV1 -469 73 2 * 1492 159 172 99 chr3 12036041 12036406 -215488172 - MER21A LTR ERV1 -530 401 9 917 148 10 91 chr3 12036406 12036557 -215488021 - L1MB7 LINE L1 -354 5830 5699 1707 188 3 0 chr3 12036557 12036849 -215487729 - AluJo SINE Alu -17 295 3 917 148 10 91 chr3 12036849 12036906 -215487672 - L1MB7 LINE L1 -485 5699 5639 484 198 0 0 chr3 12036909 12036990 -215487588 - Tigger5 DNA MER2_type 0 2323 2243 340 182 0 0 chr3 12037003 12037058 -215487520 - Tigger5 DNA MER2_type -2268 55 1 1185 169 59 72 chr3 12037059 12037130 -215487448 - L1MB7 LINE L1 -538 5636 5566 1997 161 14 30 chr3 12037130 12037491 -215487087 - THE1A LTR MaLR 0 355 1 1185 169 59 72 chr3 12037491 12037726 -215486852 - L1MB7 LINE L1 -608 5566 5327 1796 183 3 7 chr3 12037726 12038026 -215486552 - AluJb SINE Alu -13 299 1 1185 169 59 72 chr3 12038026 12038091 -215486487 - L1MB7 LINE L1 -847 5327 5263 4037 169 20 6 chr3 12038132 12038785 -215485793 + MER72 LTR ERV1 1 662 -60 2066 146 20 0 chr3 12038785 12039086 -215485492 - AluSx SINE Alu -5 307 1 2330 107 0 0 chr3 12039113 12039411 -215485167 - AluSg SINE Alu -12 298 1 232 250 0 0 chr3 12039635 12039691 -215484887 - L1MC/D LINE L1 -1876 5932 5877 1371 168 71 27 chr3 12039699 12039780 -215484798 - Tigger4(Zombi) DNA MER2_type 0 2731 2655 2142 139 0 0 chr3 12039780 12040089 -215484489 + AluSg SINE Alu 1 309 -1 1371 168 71 27 chr3 12040089 12040344 -215484234 - Tigger4(Zombi) DNA MER2_type -76 2655 2 347 229 122 15 chr3 12040380 12040511 -215484067 - L1MC/D LINE L1 -309 5812 5668 235 231 31 31 chr3 12040751 12040816 -215483762 - HAL1b LINE L1 -444 904 840 354 241 27 9 chr3 12040943 12041055 -215483523 - HAL1b LINE L1 -552 796 683 320 277 54 0 chr3 12041085 12041197 -215483381 - HAL1b LINE L1 -787 561 444 1893 181 0 3 chr3 12041204 12041497 -215483081 - AluJb SINE Alu -20 292 1 1400 137 4 26 chr3 12041497 12041730 -215482848 - MER2 DNA MER2_type -107 238 11 531 273 148 14 chr3 12042395 12042604 -215481974 + MIR SINE MIR 14 250 -12 1861 132 15 4 chr3 12042629 12042901 -215481677 - AluSg SINE Alu -13 297 23 510 120 0 13 chr3 12043143 12043218 -215481360 + MER39B LTR ERV1 557 630 -23 2551 146 27 50 chr3 12043229 12043673 -215480905 + MER21A LTR ERV1 495 928 -3 1263 200 20 84 chr3 12043673 12043989 -215480589 + L1MB7 LINE L1 5827 6119 -65 1743 114 0 0 chr3 12043989 12044217 -215480361 + AluSg/x SINE Alu 75 302 -10 1263 200 20 84 chr3 12044217 12044255 -215480323 + L1MB7 LINE L1 6119 6158 -26 478 181 11 0 chr3 12044358 12044452 -215480126 + MER113 DNA MER1_type? 188 282 -239 509 209 0 0 chr3 12044549 12044635 -215479943 + FLAM_A SINE Alu 1 86 -56 563 110 37 209 chr3 12044638 12044801 -215479777 + L1MB5 LINE L1 5832 5966 -208 1742 142 67 0 chr3 12044841 12045109 -215479469 - AluJb SINE Alu -26 286 1 915 221 69 86 chr3 12045178 12045325 -215479253 - MER39 LTR ERV1 -19 688 540 513 0 0 0 chr3 12045325 12045382 -215479196 + (TG)n Simple_repeat Simple_repeat 2 58 0 1575 184 14 28 chr3 12045382 12045670 -215478908 - AluJo SINE Alu -28 284 1 915 221 69 86 chr3 12045670 12045711 -215478867 - MER39 LTR ERV1 -166 541 501 730 179 0 30 chr3 12045711 12045845 -215478733 - FLAM_A SINE Alu -2 131 2 915 221 69 86 chr3 12045845 12046188 -215478390 - MER39 LTR ERV1 -206 501 1 274 306 12 0 chr3 12046308 12046393 -215478185 - MER97b DNA MER1_type? -874 179 94 5472 147 41 50 chr3 12046567 12046643 -215477935 + Charlie1 DNA MER1_type 1 76 -2685 1910 171 3 10 chr3 12046643 12046948 -215477630 - AluJb SINE Alu -9 303 1 5472 147 41 50 chr3 12046948 12047412 -215477166 + Charlie1 DNA MER1_type 76 542 -2219 1628 183 78 46 chr3 12047412 12047822 -215476756 + LTR37A LTR ERV1 4 426 0 5472 147 41 50 chr3 12047822 12048255 -215476323 + Charlie1 DNA MER1_type 542 977 -1784 1992 120 3 19 chr3 12048255 12048563 -215476015 + AluSx SINE Alu 1 303 -9 5472 147 41 50 chr3 12048563 12048715 -215475863 + Charlie1 DNA MER1_type 977 1129 -1632 2262 103 30 0 chr3 12048715 12049015 -215475563 + AluSx SINE Alu 1 309 -3 5472 147 41 50 chr3 12049015 12049364 -215475214 + Charlie1 DNA MER1_type 1129 2757 -4 226 319 92 50 chr3 12049512 12049531 -215475047 - MIR SINE MIR 0 262 245 1931 135 25 0 chr3 12049531 12049829 -215474749 + AluSx SINE Alu 1 305 0 226 319 92 50 chr3 12049829 12049923 -215474655 - MIR SINE MIR -17 245 156 258 32 0 0 chr3 12049923 12049954 -215474624 + (TAA)n Simple_repeat Simple_repeat 3 33 0 226 319 92 50 chr3 12049954 12050076 -215474502 - MIR SINE MIR -106 156 15 190 304 72 14 chr3 12050099 12050168 -215474410 + MIR3 SINE MIR 82 154 -54 2355 89 0 3 chr3 12051684 12051987 -215472591 + AluSg SINE Alu 1 302 -8 455 250 93 63 chr3 12052162 12052371 -215472207 + MLT1K LTR MaLR 40 326 -262 734 148 139 0 chr3 12052389 12052504 -215472074 - AluSp SINE Alu -46 267 137 463 180 180 23 chr3 12052566 12052738 -215471840 + MLT1K LTR MaLR 378 576 -12 275 258 186 16 chr3 12052744 12052868 -215471710 - MIR3 SINE MIR -75 133 3 185 235 222 0 chr3 12053008 12053089 -215471489 - MIR SINE MIR -108 154 56 1945 180 11 22 chr3 12053336 12053691 -215470887 - MLT1A1 LTR MaLR 0 365 15 1042 177 0 6 chr3 12053691 12053866 -215470712 - AluSg/x SINE Alu -5 305 132 2241 109 0 26 chr3 12053866 12054179 -215470399 - AluSx SINE Alu -7 305 1 322 234 57 81 chr3 12054206 12054330 -215470248 + MIR SINE MIR 85 205 -57 718 239 56 0 chr3 12054372 12054552 -215470026 - MIR SINE MIR -59 203 14 2254 114 0 3 chr3 12054772 12055071 -215469507 + AluSg SINE Alu 1 298 -12 777 189 0 0 chr3 12055450 12055577 -215469001 - FLAM_C SINE Alu -5 128 2 2268 137 30 35 chr3 12055658 12056024 -215468554 - THE1B LTR MaLR 0 364 1 821 137 0 8 chr3 12057500 12057624 -215466954 + AluJo SINE Alu 12 134 -178 434 287 171 5 chr3 12057675 12057735 -215466843 + MIR SINE MIR 7 56 -206 1755 170 3 10 chr3 12057735 12058024 -215466554 + AluJo SINE Alu 1 287 -25 434 287 171 5 chr3 12058024 12058179 -215466399 + MIR SINE MIR 56 258 -4 919 181 0 0 chr3 12058252 12058401 -215466177 - AluJb SINE Alu -26 286 138 1012 217 58 4 chr3 12058444 12058702 -215465876 - L1ME3 LINE L1 -1 6161 5890 1054 79 0 0 chr3 12058847 12058974 -215465604 + 7SLRNA srpRNA srpRNA 75 201 -119 2198 104 13 7 chr3 12059381 12059679 -215464899 - AluSx SINE Alu -10 302 3 203 239 0 70 chr3 12060065 12060136 -215464442 + MIR SINE MIR 163 228 -34 1960 175 68 0 chr3 12060154 12060480 -215464098 - MER7A DNA MER2_type 0 346 1 230 222 143 0 chr3 12060576 12060639 -215463939 - L2 LINE L2 -1 3312 3241 628 286 38 5 chr3 12061325 12061510 -215463068 + MIR SINE MIR 54 244 -18 180 0 0 0 chr3 12061728 12061748 -215462830 + (TG)n Simple_repeat Simple_repeat 2 21 0 1848 135 18 7 chr3 12061895 12062199 -215462379 - AluSx SINE Alu 0 307 1 22 0 0 0 chr3 12063658 12063680 -215460898 + AT_rich Low_complexity Low_complexity 1 22 0 1757 157 11 0 chr3 12064228 12064514 -215460064 - AluJb SINE Alu -23 289 1 312 326 73 59 chr3 12064617 12064905 -215459673 - L2 LINE L2 -38 3234 2943 28 61 0 0 chr3 12065276 12065325 -215459253 + AT_rich Low_complexity Low_complexity 1 49 0 1639 183 7 10 chr3 12065457 12065752 -215458826 - AluJo SINE Alu -16 296 3 536 240 185 7 chr3 12065883 12066029 -215458549 - MER5A DNA MER1_type 0 189 18 21 0 0 0 chr3 12066175 12066196 -215458382 + AT_rich Low_complexity Low_complexity 1 21 0 2602 57 0 13 chr3 12066282 12066597 -215457981 - AluY SINE Alu 0 311 1 1520 189 23 27 chr3 12067239 12067540 -215457038 - AluJo SINE Alu -12 300 1 2139 117 7 10 chr3 12068138 12068438 -215456140 - AluSx SINE Alu -13 299 1 2071 113 21 0 chr3 12069377 12069659 -215454919 + AluSq SINE Alu 1 288 -25 252 145 133 121 chr3 12071628 12071711 -215452867 + MLT1B LTR MaLR 1 84 -306 182 313 0 62 chr3 12071979 12072043 -215452535 + MIR SINE MIR 36 95 -113 399 184 61 41 chr3 12073053 12073151 -215451427 - Charlie1 DNA MER1_type -255 2506 2407 853 172 77 107 chr3 12073159 12073264 -215451314 - Charlie1 DNA MER1_type -613 2148 2041 1644 126 22 0 chr3 12073264 12073495 -215451083 + AluSx SINE Alu 1 236 -76 853 172 77 107 chr3 12073495 12073650 -215450928 - Charlie1 DNA MER1_type -720 2041 1896 1308 241 100 47 chr3 12073652 12074124 -215450454 - Charlie1 DNA MER1_type -977 1784 1228 1059 198 171 0 chr3 12074124 12074382 -215450196 - MER2 DNA MER2_type 0 345 44 2289 188 202 59 chr3 12074437 12074845 -215449733 - Charlie1 DNA MER1_type -1524 1237 889 1209 208 36 46 chr3 12074845 12075148 -215449430 + AluJo SINE Alu 1 300 -12 2289 188 202 59 chr3 12075148 12075772 -215448806 - Charlie1 DNA MER1_type -1872 889 57 180 278 103 52 chr3 12075999 12076096 -215448482 + L2 LINE L2 2538 2639 -675 249 253 76 13 chr3 12076098 12076177 -215448401 + MIR SINE MIR 62 145 -117 3494 118 135 38 chr3 12076206 12076587 -215447991 - Tigger1 DNA MER2_type 0 2418 2075 1945 133 43 7 chr3 12076587 12076888 -215447690 - AluSx SINE Alu 0 312 1 3494 118 135 38 chr3 12076888 12077164 -215447414 - Tigger1 DNA MER2_type -343 2075 1697 191 167 0 48 chr3 12078419 12078461 -215446117 - MIR SINE MIR -6 256 217 1600 157 34 27 chr3 12078932 12079226 -215445352 + AluJb SINE Alu 1 296 -16 339 164 0 15 chr3 12079791 12079858 -215444720 - Charlie5 DNA MER1_type -2505 107 42 1153 90 131 95 chr3 12080390 12080612 -215443966 + MER30 DNA MER1_type 1 230 0 22 56 0 0 chr3 12084596 12084632 -215439946 + AT_rich Low_complexity Low_complexity 1 36 0 29 0 0 0 chr3 12085734 12085763 -215438815 + AT_rich Low_complexity Low_complexity 1 29 0 280 331 61 25 chr3 12086358 12086521 -215438057 - MIR SINE MIR -91 171 3 837 172 16 123 chr3 12087301 12087545 -215437033 - MER20 DNA MER1_type 0 219 2 335 326 157 54 chr3 12087582 12087971 -215436607 - L2 LINE L2 -16 3256 2828 315 203 0 0 chr3 12087986 12088060 -215436518 + (ATG)n Simple_repeat Simple_repeat 1 74 0 697 257 34 0 chr3 12088061 12088236 -215436342 - MIR SINE MIR -8 254 74 2167 107 17 0 chr3 12088284 12088574 -215436004 - AluSx SINE Alu -17 295 1 446 226 196 98 chr3 12088611 12088812 -215435766 - MLT1H LTR MaLR 0 549 369 2249 110 3 3 chr3 12088812 12089121 -215435457 - AluSc SINE Alu 0 309 1 2325 114 0 0 chr3 12089126 12089432 -215435146 - AluSx SINE Alu -6 306 1 446 226 196 98 chr3 12089432 12089724 -215434854 - MLT1H LTR MaLR -183 366 1 480 305 106 4 chr3 12089926 12090057 -215434521 - MIR SINE MIR -2 260 144 2221 157 12 54 chr3 12090057 12090287 -215434291 - MLT1B LTR MaLR 0 390 183 2248 113 0 0 chr3 12090287 12090588 -215433990 - AluSx SINE Alu -11 301 1 2221 157 12 54 chr3 12090588 12090764 -215433814 - MLT1B LTR MaLR -207 183 1 480 305 106 4 chr3 12090764 12090868 -215433710 - MIR SINE MIR -118 144 1 1624 157 0 0 chr3 12091080 12091322 -215433256 + AluJb SINE Alu 64 305 -7 870 273 66 12 chr3 12091379 12091621 -215432957 - MIR SINE MIR 0 262 8 4748 161 15 6 chr3 12091772 12092585 -215431993 + L1MB3 LINE L1 5364 6183 0 353 211 122 0 chr3 12092632 12092722 -215431856 - HAL1 LINE L1 -2390 117 17 450 0 0 0 chr3 12093460 12093510 -215431068 + (CA)n Simple_repeat Simple_repeat 2 51 0 215 31 31 0 chr3 12093644 12093676 -215430902 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 6629 73 20 0 chr3 12093676 12094716 -215429862 - L1PA13 LINE L1 -12 6151 5143 270 160 0 0 chr3 12095149 12095199 -215429379 + T-rich Low_complexity Low_complexity 1 50 0 1072 181 51 0 chr3 12095862 12096039 -215428539 + MER5A DNA MER1_type 1 186 -3 1051 253 78 38 chr3 12096050 12096548 -215428030 - MER113 DNA MER1_type? 0 521 4 357 24 0 0 chr3 12096564 12096606 -215427972 + (TG)n Simple_repeat Simple_repeat 1 42 0 382 274 30 85 chr3 12097194 12097358 -215427220 + MER112 DNA MER1_type 15 169 -91 348 274 15 99 chr3 12097422 12097623 -215426955 - MER5A DNA MER1_type -4 185 2 425 269 45 6 chr3 12097867 12098023 -215426555 + L1MEd LINE L1 2 163 -5956 2151 119 0 10 chr3 12098088 12098383 -215426195 - AluSx SINE Alu -20 292 1 800 280 121 74 chr3 12098428 12098995 -215425583 + L1MEd LINE L1 265 804 -5325 296 185 0 17 chr3 12098995 12099010 -215425568 + AluSg/x SINE Alu 129 133 -167 2022 138 0 7 chr3 12099010 12099308 -215425270 + AluSx SINE Alu 1 296 -16 800 280 121 74 chr3 12099061 12099333 -215425245 + L1MEd LINE L1 804 1062 -5067 1975 146 7 7 chr3 12099333 12099634 -215424944 + AluJo SINE Alu 1 301 -11 800 280 121 74 chr3 12099634 12099772 -215424806 + L1MEd LINE L1 1062 1192 -4937 2208 129 3 3 chr3 12099772 12100082 -215424496 + AluSq SINE Alu 1 310 -3 800 280 121 74 chr3 12100082 12100448 -215424130 + L1MEd LINE L1 1192 1433 -4696 1392 188 4 0 chr3 12100448 12100687 -215423891 - L1PB4 LINE L1 -7 6149 5910 800 280 121 74 chr3 12100687 12100894 -215423684 + L1MEd LINE L1 1433 1629 -4500 1912 152 0 3 chr3 12100921 12101223 -215423355 + AluJb SINE Alu 5 305 -7 2408 50 0 0 chr3 12101313 12101594 -215422984 + AluY SINE Alu 6 286 -25 664 171 267 0 chr3 12102715 12102861 -215421717 - MER5A DNA MER1_type -4 185 1 1783 181 3 16 chr3 12103638 12103953 -215420625 + AluJb SINE Alu 1 311 -1 445 261 43 9 chr3 12104157 12104272 -215420306 - MIR SINE MIR -62 200 82 999 266 84 68 chr3 12105089 12105328 -215419250 + MLT1K LTR MaLR 189 438 -150 2982 116 19 7 chr3 12105328 12105749 -215418829 + MSTA LTR MaLR 3 428 0 999 266 84 68 chr3 12105749 12105903 -215418675 + MLT1K LTR MaLR 438 588 0 1276 216 150 41 chr3 12106003 12106460 -215418118 + MLT1G3 LTR MaLR 21 593 0 427 201 223 14 chr3 12106473 12106612 -215417966 + MER117 DNA MER1_type 4 171 -26 2385 117 44 0 chr3 12106678 12107044 -215417534 + L1PA13 LINE L1 5799 6179 0 548 217 255 27 chr3 12107096 12107280 -215417298 + MIR SINE MIR 23 248 -14 2248 117 9 20 chr3 12107475 12107816 -215416762 + MER1B DNA MER1_type 1 337 -2 1926 214 87 37 chr3 12107851 12108389 -215416189 + L1ME1 LINE L1 5600 6164 -2 492 205 73 40 chr3 12108397 12108548 -215416030 + MER103 DNA DNA 11 166 0 234 0 0 0 chr3 12108844 12108870 -215415708 + (CA)n Simple_repeat Simple_repeat 2 27 0 3193 105 16 2 chr3 12108911 12109339 -215415239 - MER57B LTR ERV1 0 434 1 12840 106 91 59 chr3 12109339 12109716 -215414862 - MER57B-int LTR ERV1 0 7537 7174 2421 68 0 3 chr3 12109716 12110011 -215414567 + AluY SINE Alu 1 294 -17 12840 106 91 59 chr3 12110011 12111795 -215412783 - MER57B-int LTR ERV1 -363 7174 5307 6073 130 57 28 chr3 12111786 12113446 -215411132 - MER57B-int LTR ERV1 -1702 4273 2186 * 331 78 59 0 chr3 12113442 12113493 -215411085 - MER57B-int LTR ERV1 -3726 2220 2167 * 4767 150 55 21 chr3 12113469 12114984 -215409594 - MER57B-int LTR ERV1 -4159 2371 288 4346 140 29 6 chr3 12114981 12115638 -215408940 - MER57B-int LTR ERV1 -6865 672 1 * 3043 120 21 2 chr3 12115638 12116064 -215408514 - MER57B LTR ERV1 0 434 1 389 266 0 39 chr3 12116079 12116207 -215408371 + L1ME4a LINE L1 5987 6109 -12 477 237 50 36 chr3 12116260 12116399 -215408179 - MIR SINE MIR -5 257 117 578 235 150 43 chr3 12116604 12117044 -215407534 + MLT1H LTR MaLR 3 555 0 2085 131 3 0 chr3 12117157 12117460 -215407118 - AluSx SINE Alu 0 304 1 22 0 0 0 chr3 12118147 12118169 -215406409 + AT_rich Low_complexity Low_complexity 1 22 0 228 184 0 0 chr3 12118699 12118748 -215405830 + CT-rich Low_complexity Low_complexity 2 50 0 190 301 118 11 chr3 12118873 12118966 -215405612 - L2 LINE L2 -8 3264 3162 32 0 0 0 chr3 12119079 12119111 -215405467 + AT_rich Low_complexity Low_complexity 1 32 0 230 140 53 0 chr3 12119198 12119255 -215405323 + L1MD3 LINE L1 7936 7995 0 342 250 93 9 chr3 12119834 12119942 -215404636 + MIR SINE MIR 64 180 -82 291 194 16 0 chr3 12120012 12120074 -215404504 - Charlie8 DNA MER1_type -1008 1409 1347 533 214 219 16 chr3 12120075 12120262 -215404316 - MLT1A2 LTR MaLR 0 549 325 397 220 83 133 chr3 12120263 12120504 -215404074 - Charlie8 DNA MER1_type -2186 231 3 724 173 0 8 chr3 12120621 12120748 -215403830 + MER5A DNA MER1_type 1 126 -63 664 240 0 0 chr3 12120765 12120894 -215403684 - MER5B DNA MER1_type 0 178 50 183 80 0 0 chr3 12121235 12121260 -215403318 + (TCTCCC)n Simple_repeat Simple_repeat 3 27 0 251 89 67 0 chr3 12122052 12122097 -215402481 + CT-rich Low_complexity Low_complexity 3 50 0 1542 201 7 0 chr3 12122097 12122371 -215402207 - AluJo SINE Alu -36 276 1 211 327 78 65 chr3 12122455 12122608 -215401970 - L2 LINE L2 -292 2980 2826 392 157 135 22 chr3 12122654 12122743 -215401835 - MLT2D LTR ERVL -1 396 298 801 144 0 8 chr3 12122757 12122875 -215401703 - FLAM_C SINE Alu -13 130 14 1297 174 64 77 chr3 12122880 12123207 -215401371 - MLT2D LTR ERVL -91 323 1 1596 216 92 22 chr3 12123248 12123618 -215400960 + MSTD LTR MaLR 1 396 0 286 315 164 25 chr3 12123980 12124383 -215400195 - L2 LINE L2 -665 2649 2191 300 281 48 68 chr3 12124937 12125083 -215399495 + MIR SINE MIR 25 167 -95 216 325 68 34 chr3 12125106 12125223 -215399355 - L2 LINE L2 -5 3308 3188 772 240 168 41 chr3 12125322 12125614 -215398964 - MER102a DNA MER1_type 0 330 2 1219 217 53 53 chr3 12126744 12127103 -215397475 - MLT1A2 LTR MaLR -15 359 1 180 0 0 0 chr3 12127511 12127531 -215397047 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 903 110 0 0 chr3 12127536 12127654 -215396924 - AluSq/x SINE Alu -195 118 1 832 286 67 0 chr3 12177822 12178046 -215346532 + MIR SINE MIR 13 251 -11 246 274 24 12 chr3 12178824 12178908 -215345670 - MIR SINE MIR -12 250 166 1846 72 5 0 chr3 12178911 12179134 -215345444 - AluSp SINE Alu -3 310 87 206 295 16 0 chr3 12179134 12179195 -215345383 - MIR SINE MIR -114 94 33 1990 145 3 0 chr3 12179200 12179513 -215345065 - AluSx SINE Alu 0 314 1 189 224 259 35 chr3 12179778 12179894 -215344684 - MIR3 SINE MIR -62 146 5 196 330 73 43 chr3 12180316 12180549 -215344029 + L2 LINE L2 2546 2785 -529 246 279 34 32 chr3 12180698 12180845 -215343733 - MIR SINE MIR -44 218 2 330 300 169 25 chr3 12180960 12181120 -215343458 - MIR3 SINE MIR -6 202 20 238 349 46 0 chr3 12181695 12181804 -215342774 - MIR SINE MIR -117 145 32 234 333 30 0 chr3 12182419 12182518 -215342060 - MER103 DNA DNA -2 164 63 1062 169 62 5 chr3 12182714 12182909 -215341669 + MER1B DNA MER1_type 4 209 -88 332 228 69 50 chr3 12183009 12183110 -215341468 + L2 LINE L2 3173 3275 -38 557 298 26 37 chr3 12183579 12183770 -215340808 - MIR3 SINE MIR -3 205 17 23 0 0 0 chr3 12183815 12183838 -215340740 + AT_rich Low_complexity Low_complexity 1 23 0 3749 187 30 21 chr3 12183838 12184537 -215340041 - L1MB7 LINE L1 -77 6107 5399 2152 141 13 0 chr3 12184537 12184841 -215339737 - AluJb SINE Alu -4 308 1 3749 187 30 21 chr3 12184841 12184917 -215339661 - L1MB7 LINE L1 -785 5399 5325 846 135 8 23 chr3 12184917 12185050 -215339528 - FLAM_C SINE Alu -2 131 1 413 276 40 63 chr3 12185384 12185558 -215339020 - L2 LINE L2 0 3272 3103 233 274 281 38 chr3 12185583 12185846 -215338732 + L2 LINE L2 2425 2751 -563 189 324 88 0 chr3 12185860 12185962 -215338616 + L2 LINE L2 2964 3074 -198 1159 234 100 30 chr3 12185964 12186404 -215338174 + MLT1H1 LTR MaLR 18 488 -67 448 269 115 0 chr3 12186534 12186638 -215337940 + L2 LINE L2 3157 3272 0 189 240 160 0 chr3 12186646 12186721 -215337857 - L2 LINE L2 -167 3105 3019 183 402 12 0 chr3 12186857 12186939 -215337639 + L2 LINE L2 3189 3271 -1 217 291 103 51 chr3 12186958 12187075 -215337503 + MIR SINE MIR 19 141 -67 435 267 93 0 chr3 12188295 12188456 -215336122 + Charlie8 DNA MER1_type 53 228 -2189 851 269 68 56 chr3 12188587 12189398 -215335180 - L1MEd LINE L1 -858 1632 845 2604 44 0 0 chr3 12189415 12189708 -215334870 - AluY SINE Alu -18 293 1 2420 90 63 0 chr3 12190488 12190822 -215333756 + THE1A LTR MaLR 1 355 0 201 158 26 0 chr3 12190895 12190933 -215333645 + (CACCC)n Simple_repeat Simple_repeat 3 41 0 219 320 33 65 chr3 12191414 12191567 -215333011 + L2 LINE L2 2911 3058 -255 907 171 50 11 chr3 12191576 12191757 -215332821 + MER5A DNA MER1_type 1 188 -1 367 273 61 0 chr3 12191778 12191877 -215332701 + L2 LINE L2 3141 3245 -27 205 229 53 135 chr3 12191906 12192076 -215332502 - L2 LINE L2 -246 3026 2871 747 219 43 12 chr3 12192150 12192314 -215332264 + MER5B DNA MER1_type 4 172 -6 1916 166 7 0 chr3 12192325 12192620 -215331958 + AluJo SINE Alu 1 297 -15 206 308 70 92 chr3 12192636 12193039 -215331539 - L2 LINE L2 -557 2757 2364 1064 163 16 0 chr3 12193856 12194040 -215330538 - MER5A DNA MER1_type -2 187 1 284 263 124 25 chr3 12194466 12194629 -215329949 + MIR3 SINE MIR 21 171 -37 876 239 84 66 chr3 12195125 12195697 -215328881 - L1ME4a LINE L1 -18 6103 5522 310 219 0 0 chr3 12195711 12195775 -215328803 + L2 LINE L2 3200 3263 -9 206 283 0 0 chr3 12195781 12195827 -215328751 + MIR SINE MIR 106 151 -57 621 269 26 52 chr3 12195931 12196199 -215328379 + MIR SINE MIR 2 262 0 2074 211 47 10 chr3 12196827 12197314 -215327264 - MLT1D LTR MaLR 0 505 1 199 254 48 16 chr3 12197325 12197388 -215327190 - L2 LINE L2 0 3313 3249 1084 222 110 76 chr3 12197554 12197595 -215326983 - MER113 DNA MER1_type? 0 521 483 1961 121 74 9 chr3 12197595 12197934 -215326644 - MER46B DNA MER2_type 0 236 1 1084 222 110 76 chr3 12197934 12198391 -215326187 - MER113 DNA MER1_type? -38 483 6 490 274 8 0 chr3 12199387 12199511 -215325067 + MIR SINE MIR 73 197 -65 568 270 15 7 chr3 12199539 12199676 -215324902 - MIR SINE MIR -105 157 20 273 227 96 18 chr3 12199776 12199875 -215324703 + MIR SINE MIR 28 148 -60 36 116 0 0 chr3 12200347 12200511 -215324067 + AT_rich Low_complexity Low_complexity 1 164 0 22 89 0 0 chr3 12200545 12200590 -215323988 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr3 12200635 12200663 -215323915 + AT_rich Low_complexity Low_complexity 1 28 0 59 46 0 0 chr3 12200696 12200783 -215323795 + AT_rich Low_complexity Low_complexity 1 87 0 351 295 103 6 chr3 12201182 12201338 -215323240 + LTR16A LTR ERVL 167 337 -113 375 226 54 0 chr3 12201570 12201663 -215322915 + MIR SINE MIR 47 144 -64 529 258 65 97 chr3 12201764 12202043 -215322535 + L2 LINE L2 3002 3271 -1 217 222 0 0 chr3 12202134 12202170 -215322408 - MIR SINE MIR -71 191 156 1592 174 28 9 chr3 12203421 12203738 -215320840 - MER33 DNA MER1_type 0 324 2 2609 141 22 4 chr3 12203973 12204427 -215320151 + L1MB3 LINE L1 5707 6168 -15 513 295 78 26 chr3 12204488 12204681 -215319897 - MIR SINE MIR -37 225 23 1443 276 48 36 chr3 12204697 12205284 -215319294 + L2 LINE L2 2718 3311 -2 267 257 48 67 chr3 12205288 12205315 -215319263 - MIR SINE MIR -61 201 175 498 243 27 0 chr3 12205315 12205426 -215319152 + MER81 DNA DNA 1 114 0 267 257 48 67 chr3 12205426 12205503 -215319075 - MIR SINE MIR -87 175 99 243 365 139 0 chr3 12205595 12205753 -215318825 + MIR SINE MIR 8 180 -62 652 352 0 8 chr3 12205762 12206009 -215318569 - LTR16A LTR ERVL 0 450 206 838 323 114 28 chr3 12207718 12208155 -215316423 - L3 LINE CR1 -8 1569 1095 1978 120 3 7 chr3 12208199 12208498 -215316080 + AluSx SINE Alu 1 298 -14 837 127 0 0 chr3 12208900 12209018 -215315560 + AluJb SINE Alu 1 118 -194 1907 232 38 15 chr3 12209104 12209583 -215314995 + L1ME1 LINE L1 5596 6085 -81 368 283 0 33 chr3 12209606 12209698 -215314880 + MIR3 SINE MIR 103 191 -17 186 71 0 0 chr3 12210109 12210137 -215314441 + (TTAA)n Simple_repeat Simple_repeat 2 29 0 334 305 184 12 chr3 12210644 12210900 -215313678 + L2 LINE L2 2887 3186 -86 711 282 44 5 chr3 12210911 12211114 -215313464 - MIR SINE MIR -1 261 51 534 287 126 12 chr3 12211114 12211281 -215313297 + MER91A DNA MER1_type 1 186 -10 244 182 45 0 chr3 12211270 12211314 -215313264 - MIR SINE MIR -212 50 5 * 431 260 41 41 chr3 12212049 12212195 -215312383 + MIR SINE MIR 67 212 -50 290 385 65 6 chr3 12213124 12213475 -215311103 - L2 LINE L2 -2361 953 582 514 220 147 39 chr3 12213494 12213826 -215310752 - MLT1J LTR MaLR -35 476 11 462 257 142 0 chr3 12213855 12213968 -215310610 - L2 LINE L2 -2 3270 3142 249 313 131 28 chr3 12214117 12214293 -215310285 - L2 LINE L2 0 3313 3120 222 194 32 16 chr3 12215164 12215226 -215309352 + T-rich Low_complexity Low_complexity 2 64 0 245 176 0 0 chr3 12215228 12215279 -215309299 - L1MB3 LINE L1 -1 6182 6132 238 335 68 0 chr3 12215291 12215482 -215309096 - MER113 DNA MER1_type? -313 208 5 470 293 29 7 chr3 12215482 12215622 -215308956 - MIR3 SINE MIR -51 157 15 245 333 37 9 chr3 12216056 12216164 -215308414 + MIR SINE MIR 43 153 -109 207 263 200 27 chr3 12216243 12216391 -215308187 - MIR SINE MIR -62 200 22 289 150 50 0 chr3 12216552 12216612 -215307966 + MER103 DNA DNA 93 155 -11 519 245 148 0 chr3 12217155 12217310 -215307268 + MER45A DNA AcHobo 1 178 0 329 192 167 39 chr3 12217315 12217393 -215307185 + L2 LINE L2 3147 3234 -38 2476 147 70 2 chr3 12218509 12218952 -215305626 - L1MB3 LINE L1 -7 6176 5704 279 258 27 30 chr3 12219281 12219436 -215305142 + MIR SINE MIR 34 235 -27 959 189 115 86 chr3 12219514 12219958 -215304620 - L1MC4 LINE L1 -601 7441 6985 180 224 0 149 chr3 12220031 12220098 -215304480 - MIR SINE MIR -16 246 190 2593 184 80 19 chr3 12220111 12220637 -215303941 - MLT1F1 LTR MaLR -9 558 1 607 201 255 0 chr3 12220652 12220801 -215303777 - MIR SINE MIR -64 198 12 477 100 0 0 chr3 12221154 12221224 -215303354 - L1PA15 LINE L1 -9 6156 6087 928 264 97 36 chr3 12221964 12222294 -215302284 + MLT1K LTR MaLR 84 433 -155 477 0 0 0 chr3 12222301 12222354 -215302224 + (TGGA)n Simple_repeat Simple_repeat 1 53 0 219 289 115 39 chr3 12222474 12222578 -215302000 - L2 LINE L2 -5 3308 3197 272 284 197 0 chr3 12222590 12222717 -215301861 + MLT1K LTR MaLR 419 570 -18 1692 165 0 4 chr3 12223815 12224094 -215300484 - AluJb SINE Alu -22 290 13 667 301 9 19 chr3 12224178 12224389 -215300189 + MIR SINE MIR 47 254 -8 321 307 69 55 chr3 12224405 12224623 -215299955 + L1MC4a LINE L1 5841 6061 -1747 23 33 0 0 chr3 12224703 12224733 -215299845 + AT_rich Low_complexity Low_complexity 1 30 0 284 260 13 13 chr3 12225267 12225344 -215299234 - MIR SINE MIR -115 93 17 278 401 7 0 chr3 12225931 12226068 -215298510 + (TG)n Simple_repeat Simple_repeat 1 138 0 189 107 0 0 chr3 12226163 12226191 -215298387 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 309 259 158 51 chr3 12226619 12226777 -215297801 + MLT1H LTR MaLR 56 230 -319 628 203 17 0 chr3 12226829 12226947 -215297631 + MLT1K LTR MaLR 436 555 0 237 256 77 39 chr3 12226949 12227027 -215297551 + MIR3 SINE MIR 88 168 -40 180 286 24 71 chr3 12227055 12227139 -215297439 - MIR SINE MIR -82 180 101 1820 157 0 25 chr3 12227397 12227715 -215296863 + AluJo SINE Alu 1 310 -2 193 310 103 0 chr3 12227987 12228045 -215296533 - L3 LINE CR1 -934 643 580 1899 133 0 16 chr3 12228520 12228828 -215295750 - AluSx SINE Alu -9 303 1 911 169 28 17 chr3 12228863 12229041 -215295537 - AluJo SINE Alu -12 300 121 2249 215 19 24 chr3 12229048 12229540 -215295038 - L1MB7 LINE L1 -14 6170 5679 535 313 57 32 chr3 12229540 12229957 -215294621 - L1MC4a LINE L1 -297 5824 5394 351 283 115 37 chr3 12230446 12230637 -215293941 - MIR SINE MIR -34 228 23 529 233 200 33 chr3 12231489 12231699 -215292879 + LTR16A LTR ERVL 16 260 -190 1548 153 51 0 chr3 12232165 12232440 -215292138 - AluJo SINE Alu -23 289 1 474 228 102 0 chr3 12232513 12232640 -215291938 + MIR SINE MIR 102 241 -21 352 68 0 0 chr3 12233484 12233528 -215291050 + MIR3 SINE MIR 115 158 -50 1110 178 5 0 chr3 12233529 12233714 -215290864 + MER5A DNA MER1_type 2 187 -2 588 274 58 58 chr3 12233745 12234074 -215290504 - MER102b DNA MER1_type -12 329 1 891 352 115 15 chr3 12234451 12235102 -215289476 + L3 LINE CR1 786 1501 -76 1047 269 97 71 chr3 12235139 12235675 -215288903 + MLT1K LTR MaLR 37 586 -2 354 319 101 29 chr3 12236052 12236259 -215288319 - MIR SINE MIR -6 256 35 246 360 0 0 chr3 12236639 12236714 -215287864 + MER5A DNA MER1_type 112 186 -3 478 224 48 40 chr3 12237655 12237780 -215286798 - MIR SINE MIR -7 255 130 2524 175 60 28 chr3 12237894 12238430 -215286148 - L1MC2 LINE L1 -151 6193 5641 258 113 57 0 chr3 12238431 12238484 -215286094 - L1MC2 LINE L1 0 6344 6289 281 128 64 28 chr3 12238658 12238767 -215285811 + (TA)n Simple_repeat Simple_repeat 1 113 0 810 219 56 85 chr3 12238781 12238867 -215285711 - L1MC2 LINE L1 -1865 5943 5856 1912 138 0 7 chr3 12238867 12239158 -215285420 + AluSx SINE Alu 1 289 -23 810 219 56 85 chr3 12239158 12239390 -215285188 - L1MC2 LINE L1 -1952 5856 5634 511 203 23 73 chr3 12239504 12239681 -215284897 + L1MC5 LINE L1 7758 7925 -36 498 297 36 0 chr3 12240140 12240278 -215284300 - MIR SINE MIR -72 190 48 587 223 192 16 chr3 12240512 12240705 -215283873 + MIR SINE MIR 6 232 -30 699 133 285 0 chr3 12240717 12240875 -215283703 - MER3 DNA MER1_type -6 203 1 408 303 48 37 chr3 12241191 12241379 -215283199 + MIR SINE MIR 21 210 -52 351 275 176 14 chr3 12241454 12241596 -215282982 + MIR SINE MIR 20 184 -78 367 283 87 29 chr3 12243069 12243207 -215281371 + MIR SINE MIR 83 228 -34 253 200 20 0 chr3 12243643 12243693 -215280885 - L2 LINE L2 -244 3028 2978 204 255 123 47 chr3 12244591 12244697 -215279881 + L2 LINE L2 3159 3272 0 1988 125 0 0 chr3 12244840 12245149 -215279429 + AluSx SINE Alu 1 309 0 379 180 140 20 chr3 12245290 12245390 -215279188 - MIR SINE MIR -10 252 141 624 277 36 111 chr3 12245412 12245433 -215279145 - L2 LINE L2 -267 3005 2984 2730 82 6 3 chr3 12245433 12245787 -215278791 - THE1A LTR MaLR 0 355 1 624 277 36 111 chr3 12245787 12246471 -215278107 - L2 LINE L2 -288 2984 2367 191 339 89 9 chr3 12247315 12247427 -215277151 - MIR SINE MIR -113 149 29 402 324 0 10 chr3 12247659 12247761 -215276817 + MIR SINE MIR 32 132 -76 264 280 187 13 chr3 12247766 12247916 -215276662 - MER20B DNA MER1_type -43 176 1 1178 185 94 42 chr3 12247920 12247997 -215276581 - MER33 DNA MER1_type -2261 324 252 1988 141 0 6 chr3 12247997 12248309 -215276269 + AluSx SINE Alu 1 310 -2 1178 185 94 42 chr3 12248309 12248539 -215276039 - MER33 DNA MER1_type -2333 252 1 418 308 55 52 chr3 12248989 12249317 -215275261 + L2 LINE L2 2814 3142 -171 917 139 13 6 chr3 12249338 12249496 -215275082 - AluSg/x SINE Alu -22 290 132 274 263 97 79 chr3 12249499 12249613 -215274965 + L2 LINE L2 3155 3270 -43 21 0 0 0 chr3 12249865 12249886 -215274692 + AT_rich Low_complexity Low_complexity 1 21 0 678 152 0 0 chr3 12250389 12250488 -215274090 - Tigger7 DNA MER2_type 0 2487 2389 * 1292 184 0 107 chr3 12250486 12250785 -215273793 - Tigger7 DNA MER2_type -2220 267 1 892 172 40 0 chr3 12251192 12251366 -215273212 + L1MC3 LINE L1 7605 7785 0 222 91 0 0 chr3 12251669 12251702 -215272876 + (ATG)n Simple_repeat Simple_repeat 1 33 0 500 276 135 5 chr3 12251916 12252108 -215272470 + MIR SINE MIR 33 249 -13 1587 191 0 0 chr3 12252124 12252406 -215272172 + AluJo SINE Alu 1 282 -30 513 84 0 0 chr3 12252408 12252479 -215272099 + (TA)n Simple_repeat Simple_repeat 1 71 0 42 48 0 0 chr3 12252483 12252546 -215272032 + AT_rich Low_complexity Low_complexity 1 63 0 260 212 41 53 chr3 12252701 12252804 -215271774 - L1M4 LINE L1 -1938 4208 4101 264 257 79 0 chr3 12252842 12252943 -215271635 + L1M4 LINE L1 3941 4049 -2097 364 226 55 65 chr3 12253090 12253289 -215271289 - L1M4 LINE L1 -3162 2984 2788 1844 138 7 16 chr3 12253323 12253628 -215270950 - AluJo SINE Alu -5 307 6 385 279 56 101 chr3 12253656 12254298 -215270280 + L1ME4a LINE L1 4708 5320 -826 1146 166 50 22 chr3 12254370 12254648 -215269930 + AluJo SINE Alu 14 299 -13 847 318 61 25 chr3 12254659 12255168 -215269410 + L1ME4a LINE L1 5368 5894 -276 440 115 0 13 chr3 12255796 12255874 -215268704 + (TGGA)n Simple_repeat Simple_repeat 3 79 0 29 28 0 0 chr3 12256045 12256081 -215268497 + AT_rich Low_complexity Low_complexity 1 36 0 21 98 0 0 chr3 12256108 12256159 -215268419 + AT_rich Low_complexity Low_complexity 1 51 0 312 323 54 23 chr3 12256619 12256749 -215267829 - MIR SINE MIR -32 230 97 328 225 67 34 chr3 12256795 12256884 -215267694 - L1MC4 LINE L1 -1339 6703 6612 301 260 10 67 chr3 12256800 12256904 -215267674 + L1MC4 LINE L1 6611 6708 -1334 * 303 286 22 22 chr3 12257044 12257135 -215267443 + L1MC4 LINE L1 6612 6702 -1340 231 185 111 0 chr3 12257148 12257229 -215267349 + L1MC4 LINE L1 6614 6703 -1339 310 264 7 7 chr3 12257232 12257372 -215267206 + (TA)n Simple_repeat Simple_repeat 2 141 0 1718 156 30 3 chr3 12257374 12257669 -215266909 - AluJb SINE Alu -9 303 1 185 259 69 35 chr3 12257677 12257735 -215266843 - L2 LINE L2 -17 3296 3237 851 282 58 47 chr3 12257747 12257926 -215266652 - LTR16A LTR ERVL 0 450 274 4552 95 5 5 chr3 12257926 12258569 -215266009 - L1PA12 LINE L1 -1 6167 5525 851 282 58 47 chr3 12258569 12258754 -215265824 - LTR16A LTR ERVL -176 274 82 273 200 0 80 chr3 12258771 12258846 -215265732 - L2 LINE L2 -86 3227 3159 395 129 0 16 chr3 12259271 12259333 -215265245 - MLT1L LTR MaLR -8 607 547 680 291 66 21 chr3 12260201 12260490 -215264088 + L1MC4a LINE L1 5666 5967 -1841 1421 174 13 0 chr3 12261332 12261561 -215263017 - MLT1A1 LTR MaLR 0 365 134 1157 96 39 0 chr3 12261561 12261717 -215262861 - MSTB LTR MaLR 0 426 265 240 227 121 0 chr3 12262085 12262151 -215262427 + MIR SINE MIR 91 164 -98 389 218 150 8 chr3 12262201 12262334 -215262244 + L1ME4a LINE L1 5968 6119 -2 2343 76 3 0 chr3 12262455 12262758 -215261820 + AluY SINE Alu 1 304 -7 508 339 213 26 chr3 12262762 12263156 -215261422 - L3 LINE CR1 -539 1038 719 1573 167 72 10 chr3 12263156 12263449 -215261129 + AluJb SINE Alu 1 311 -1 508 339 213 26 chr3 12263449 12263659 -215260919 - L3 LINE CR1 -858 719 321 255 265 48 48 chr3 12264261 12264327 -215260251 + MER5B DNA MER1_type 1 69 -109 1297 136 3 183 chr3 12264327 12264688 -215259890 + AluJb SINE Alu 1 296 -16 255 265 48 48 chr3 12264688 12264704 -215259874 + MER5B DNA MER1_type 68 83 -95 202 118 20 98 chr3 12264742 12264793 -215259785 + MIR3 SINE MIR 113 159 -49 229 290 43 32 chr3 12264867 12264960 -215259618 - MIR3 SINE MIR -38 170 77 710 267 94 36 chr3 12265467 12265624 -215258954 + L2 LINE L2 2927 3108 -205 1441 198 7 16 chr3 12265624 12265927 -215258651 - AluJo SINE Alu -12 300 1 710 267 94 36 chr3 12265927 12266046 -215258532 + L2 LINE L2 3108 3219 -94 184 271 34 17 chr3 12266045 12266104 -215258474 - L2 LINE L2 -8 3305 3246 * 352 272 65 19 chr3 12266317 12266472 -215258106 + MIR SINE MIR 21 146 -62 2530 48 0 6 chr3 12267337 12267648 -215256930 + AluY SINE Alu 1 309 -2 378 355 39 20 chr3 12267887 12268090 -215256488 + L2 LINE L2 2732 2938 -376 228 288 12 12 chr3 12268090 12268103 -215256475 - L1MA10 LINE L1 -86 6248 6236 581 222 44 0 chr3 12268103 12268238 -215256340 - L1ME2 LINE L1 -91 6073 5933 410 160 20 60 chr3 12268243 12268343 -215256235 + L1ME2 LINE L1 6009 6104 -60 203 308 125 10 chr3 12269112 12269216 -215255362 + MIR SINE MIR 24 139 -69 1101 281 56 35 chr3 12269243 12269489 -215255089 - MLT1K LTR MaLR 0 476 214 1917 144 3 0 chr3 12269489 12269794 -215254784 - AluJb SINE Alu -6 306 1 1101 281 56 35 chr3 12269794 12270010 -215254568 - MLT1K LTR MaLR -262 214 4 248 242 61 30 chr3 12270341 12270440 -215254138 + L2 LINE L2 2881 2982 -331 464 313 62 0 chr3 12270515 12270643 -215253935 + L2 LINE L2 3134 3269 -3 2201 157 56 12 chr3 12270854 12271262 -215253316 + MSTB LTR MaLR 1 426 0 280 288 14 0 chr3 12271294 12271367 -215253211 - MER103 DNA DNA -3 163 90 381 347 41 41 chr3 12271399 12271562 -215253016 - MIR SINE MIR -5 257 92 2085 122 0 0 chr3 12271562 12271857 -215252721 + AluSg SINE Alu 1 295 -15 381 347 41 41 chr3 12271857 12271938 -215252640 - MIR SINE MIR -169 93 13 344 339 54 24 chr3 12272343 12272511 -215252067 - L2 LINE L2 -3 3269 3097 234 215 13 51 chr3 12273292 12273371 -215251207 + CT-rich Low_complexity Low_complexity 4 79 0 1987 165 120 2 chr3 12273409 12273802 -215250776 - L1MB3 LINE L1 0 6183 5745 201 352 80 23 chr3 12274175 12274351 -215250227 + L2 LINE L2 3008 3193 -79 604 156 41 16 chr3 12275259 12275381 -215249197 + MLT1B LTR MaLR 2 126 -264 1760 125 0 46 chr3 12275382 12275663 -215248915 + AluJb SINE Alu 1 268 -44 301 74 19 19 chr3 12275665 12275719 -215248859 + (TAAAA)n Simple_repeat Simple_repeat 1 54 0 726 308 205 25 chr3 12275729 12276372 -215248206 - L2 LINE L2 -261 3052 2281 1845 216 29 5 chr3 12276372 12276789 -215247789 + L1MB7 LINE L1 5757 6183 -1 726 308 205 25 chr3 12276789 12276854 -215247724 - L2 LINE L2 -1032 2281 2229 400 69 48 18 chr3 12277206 12277274 -215247304 - AluSq/x SINE Alu -166 137 76 437 253 99 31 chr3 12277825 12277987 -215246591 - MIR SINE MIR -89 173 1 252 0 0 0 chr3 12278485 12278513 -215246065 + (TG)n Simple_repeat Simple_repeat 2 29 0 257 234 129 53 chr3 12278611 12278782 -215245796 - L1ME4a LINE L1 -6 6115 5932 303 244 23 122 chr3 12278809 12278981 -215245597 - MIR SINE MIR -1 261 107 329 205 205 12 chr3 12279232 12279315 -215245263 + MLT1D LTR MaLR 8 106 -399 1904 131 0 25 chr3 12279323 12279643 -215244935 + AluJo SINE Alu 1 312 0 1017 215 116 59 chr3 12279659 12280013 -215244565 - MLT1C LTR MaLR 0 467 94 27 0 0 0 chr3 12280022 12280049 -215244529 + AT_rich Low_complexity Low_complexity 1 27 0 1121 158 0 6 chr3 12280079 12280256 -215244322 - AluSg/x SINE Alu -5 307 132 1871 131 0 10 chr3 12280276 12280581 -215243997 + AluSc SINE Alu 1 302 -7 385 155 28 28 chr3 12280610 12280681 -215243897 - MER5A DNA MER1_type -109 80 10 1503 155 0 49 chr3 12280683 12280967 -215243611 - AluJo SINE Alu -25 287 18 205 0 0 0 chr3 12280971 12280994 -215243584 - MER5C DNA MER1_type -298 26 4 1292 202 0 8 chr3 12281090 12281337 -215243241 - L1PB4 LINE L1 -4 6152 5908 1823 107 55 0 chr3 12281355 12281666 -215242912 - AluY SINE Alu 0 326 1 748 255 101 49 chr3 12281666 12281972 -215242606 - Charlie2 DNA MER1_type -2539 323 2 895 277 126 28 chr3 12282414 12282883 -215241695 - MER113 DNA MER1_type? 0 521 7 403 252 94 38 chr3 12283423 12283582 -215240996 + MIR SINE MIR 95 262 0 652 263 72 16 chr3 12284058 12284252 -215240326 + MIR SINE MIR 57 261 -1 238 298 123 18 chr3 12284306 12284420 -215240158 + MIR3 SINE MIR 35 160 -48 418 250 26 9 chr3 12284465 12284581 -215239997 - MER117 DNA MER1_type -79 118 1 265 186 0 0 chr3 12284620 12284663 -215239915 + MSTA LTR MaLR 1 43 -385 291 207 0 0 chr3 12286026 12286084 -215238494 - L1ME3A LINE L1 -11 6159 6102 1938 98 0 4 chr3 12286931 12287205 -215237373 + L1PA7 LINE L1 5877 6149 -5 269 372 41 14 chr3 12287540 12287685 -215236893 + MIR SINE MIR 99 247 -15 191 374 148 30 chr3 12287707 12288073 -215236505 - L2 LINE L2 -11 3261 2853 1737 144 22 39 chr3 12288339 12288651 -215235927 + AluJo SINE Alu 4 310 -2 282 229 29 0 chr3 12288795 12288865 -215235713 - MIR SINE MIR -83 125 54 251 191 138 64 chr3 12289284 12289378 -215235200 - MIR SINE MIR -58 204 104 450 0 0 0 chr3 12289881 12289931 -215234647 + (CA)n Simple_repeat Simple_repeat 2 51 0 911 239 41 18 chr3 12290730 12290948 -215233630 + MER58A DNA MER1_type 2 224 0 765 300 84 9 chr3 12290990 12291323 -215233255 - L1ME4a LINE L1 -83 6038 5681 297 75 0 0 chr3 12291324 12291364 -215233214 + (TG)n Simple_repeat Simple_repeat 1 40 0 1724 143 21 7 chr3 12291886 12292166 -215232412 - AluSx SINE Alu -28 284 1 816 121 9 0 chr3 12292384 12292500 -215232078 + FLAM_C SINE Alu 2 118 -25 269 50 0 25 chr3 12292503 12292543 -215232035 + (TAAAA)n Simple_repeat Simple_repeat 3 41 0 2102 119 0 16 chr3 12292544 12292856 -215231722 + AluSx SINE Alu 1 307 -5 186 193 0 0 chr3 12292860 12292917 -215231661 + A-rich Low_complexity Low_complexity 3 59 0 420 207 27 0 chr3 12292941 12293052 -215231526 + MER117 DNA MER1_type 1 114 -83 249 233 23 70 chr3 12293218 12293304 -215231274 + 7SK RNA RNA 7 88 -105 382 280 93 47 chr3 12293378 12293528 -215231050 - L3 LINE CR1 -454 1123 967 180 0 0 0 chr3 12293888 12293908 -215230670 + (GTGTG)n Simple_repeat Simple_repeat 1 20 0 2087 212 22 7 chr3 12294324 12294786 -215229792 - L1MB3 LINE L1 0 6183 5715 252 300 38 0 chr3 12294789 12294869 -215229709 + MIR SINE MIR 62 144 -118 510 266 47 30 chr3 12295101 12295270 -215229308 - MER20B DNA MER1_type -604 179 8 247 143 71 54 chr3 12295410 12295466 -215229112 - MLT2B3 LTR ERVL 0 520 464 230 283 0 0 chr3 12295466 12295519 -215229059 + (TG)n Simple_repeat Simple_repeat 2 54 0 2836 183 16 12 chr3 12295529 12296032 -215228546 - MLT2B3 LTR ERVL -47 507 3 319 315 127 24 chr3 12296059 12296224 -215228354 + MIR3 SINE MIR 18 199 -9 469 281 58 18 chr3 12297065 12297236 -215227342 + MIR SINE MIR 28 205 -57 327 49 0 0 chr3 12297360 12297401 -215227177 + (TG)n Simple_repeat Simple_repeat 2 42 0 702 278 68 63 chr3 12297603 12297984 -215226594 - L2 LINE L2 -338 2976 2594 516 337 37 0 chr3 12298395 12298582 -215225996 + MER91A DNA MER1_type 2 195 -1 348 319 124 9 chr3 12298663 12298776 -215225802 - L2 LINE L2 -3 3269 3144 2120 104 3 0 chr3 12298786 12299084 -215225494 - AluSg SINE Alu -11 299 1 1014 258 21 0 chr3 12299639 12299872 -215224706 + MIR SINE MIR 24 261 -1 1134 116 24 0 chr3 12301049 12301213 -215223365 + L1PA10 LINE L1 5976 6143 -25 211 296 28 46 chr3 12501566 12501674 -215022904 + L2 LINE L2 332 437 -2877 2209 116 17 0 chr3 12501775 12502077 -215022501 - AluSx SINE Alu -5 307 1 259 267 57 48 chr3 12502559 12502588 -215021990 + L2 LINE L2 1326 1353 -1961 2102 115 13 29 chr3 12502588 12502901 -215021677 - AluSx SINE Alu -4 308 1 259 267 57 48 chr3 12502901 12502976 -215021602 + L2 LINE L2 1353 1431 -1883 585 314 173 26 chr3 12503346 12504056 -215020522 + L2 LINE L2 1805 2409 -905 2340 147 18 61 chr3 12504056 12504441 -215020137 + MSTB LTR MaLR 1 401 -25 1760 162 17 26 chr3 12504441 12504578 -215020000 + AluJo SINE Alu 1 138 -174 2310 100 0 0 chr3 12504578 12504868 -215019710 + AluSc SINE Alu 1 290 -19 1760 162 17 26 chr3 12504868 12505032 -215019546 + AluJo SINE Alu 138 299 -13 2244 122 0 0 chr3 12505039 12505342 -215019236 + AluSx SINE Alu 1 303 -9 2340 147 18 61 chr3 12505342 12505391 -215019187 + MSTB LTR MaLR 407 424 -2 585 314 173 26 chr3 12505391 12505686 -215018892 + L2 LINE L2 2409 2958 -356 552 194 81 122 chr3 12506210 12506269 -215018309 + MLT1J LTR MaLR 5 65 -446 2314 104 0 0 chr3 12506269 12506566 -215018012 - AluSx SINE Alu -15 297 1 552 194 81 122 chr3 12506566 12506949 -215017629 + MLT1J LTR MaLR 65 500 -11 263 344 0 25 chr3 12508477 12508637 -215015941 + C-rich Low_complexity Low_complexity 4 159 0 350 113 0 42 chr3 12509595 12509666 -215014912 + (CA)n Simple_repeat Simple_repeat 2 69 0 237 65 0 0 chr3 12510970 12511001 -215013577 + (GA)n Simple_repeat Simple_repeat 2 32 0 1974 134 22 0 chr3 12511078 12511355 -215013223 + AluSx SINE Alu 3 285 -27 3730 178 20 18 chr3 12511375 12512039 -215012539 - MER72 LTR ERV1 -57 665 1 1185 169 59 72 chr3 12512080 12512145 -215012433 + L1MB7 LINE L1 5263 5327 -847 1796 183 3 7 chr3 12512145 12512445 -215012133 + AluJb SINE Alu 1 299 -13 1185 169 59 72 chr3 12512445 12512680 -215011898 + L1MB7 LINE L1 5327 5566 -608 1997 161 14 30 chr3 12512680 12513041 -215011537 + THE1A LTR MaLR 1 355 0 1185 169 59 72 chr3 12513041 12513112 -215011466 + L1MB7 LINE L1 5566 5636 -538 340 182 0 0 chr3 12513113 12513168 -215011410 + Tigger5 DNA MER2_type 1 55 -2268 484 198 0 0 chr3 12513181 12513262 -215011316 + Tigger5 DNA MER2_type 2243 2323 0 917 148 10 91 chr3 12513265 12513322 -215011256 + L1MB7 LINE L1 5639 5699 -485 1707 188 3 0 chr3 12513322 12513614 -215010964 + AluJo SINE Alu 3 295 -17 917 148 10 91 chr3 12513614 12513765 -215010813 + L1MB7 LINE L1 5699 5830 -354 1492 159 172 99 chr3 12513765 12514130 -215010448 + MER21A LTR ERV1 9 401 -530 291 264 0 0 chr3 12514130 12514202 -215010376 + MER34 LTR ERV1 2 73 -469 2500 145 61 18 chr3 12514225 12514681 -215009897 + LTR29 LTR ERV1 137 612 -10 2551 146 27 50 chr3 12514688 12515132 -215009446 + MER21A LTR ERV1 495 928 -3 1263 200 20 84 chr3 12515132 12515448 -215009130 + L1MB7 LINE L1 5827 6119 -65 1743 114 0 0 chr3 12515448 12515676 -215008902 + AluSg/x SINE Alu 75 302 -10 1263 200 20 84 chr3 12515676 12515714 -215008864 + L1MB7 LINE L1 6119 6158 -26 478 181 11 0 chr3 12515817 12515911 -215008667 + MER113 DNA MER1_type? 188 282 -239 509 209 0 0 chr3 12516008 12516094 -215008484 + FLAM_A SINE Alu 1 86 -56 563 110 37 209 chr3 12516097 12516260 -215008318 + L1MB5 LINE L1 5832 5966 -208 1149 151 97 0 chr3 12516300 12516485 -215008093 - AluSg/x SINE Alu -26 286 84 491 185 0 0 chr3 12516762 12516843 -215007735 + FLAM_C SINE Alu 30 110 -33 222 274 47 105 chr3 12516923 12517113 -215007465 + MIR SINE MIR 76 254 -8 1264 170 185 8 chr3 12518035 12518294 -215006284 - AluSg1 SINE Alu -4 305 1 198 0 0 0 chr3 12518550 12518572 -215006006 + (TTA)n Simple_repeat Simple_repeat 2 23 0 2296 114 0 0 chr3 12518574 12518880 -215005698 - AluSx SINE Alu -6 306 1 728 142 40 114 chr3 12519738 12519820 -215004758 - MER46A DNA MER2_type -2522 209 145 2336 96 3 0 chr3 12519820 12520123 -215004455 - AluSg SINE Alu -6 304 1 728 142 40 114 chr3 12520123 12520216 -215004362 - MER46A DNA MER2_type -2586 145 47 374 220 50 40 chr3 12520533 12520633 -215003945 + L2 LINE L2 3168 3268 -4 358 303 86 13 chr3 12520641 12520793 -215003785 - MIR SINE MIR -50 212 50 2562 48 0 0 chr3 12522015 12522306 -215002272 + AluY SINE Alu 1 291 -20 860 129 0 0 chr3 12522451 12522567 -215002011 - FLAM_C SINE Alu -17 116 1 2335 107 0 0 chr3 12522594 12522892 -215001686 - AluSg SINE Alu -12 298 1 232 250 0 0 chr3 12523116 12523172 -215001406 - L1MC/D LINE L1 -1876 5932 5877 1371 168 71 27 chr3 12523180 12523261 -215001317 - Tigger4(Zombi) DNA MER2_type 0 2731 2655 2369 110 0 0 chr3 12523261 12523571 -215001007 + AluSg SINE Alu 1 310 0 1371 168 71 27 chr3 12523571 12523826 -215000752 - Tigger4(Zombi) DNA MER2_type -76 2655 2 347 248 120 0 chr3 12523864 12523997 -215000581 - L1MC/D LINE L1 -2000 5808 5660 235 231 31 31 chr3 12524233 12524298 -215000280 - HAL1b LINE L1 -444 904 840 354 241 27 9 chr3 12524425 12524537 -215000041 - HAL1b LINE L1 -552 796 683 320 277 54 0 chr3 12524567 12524679 -214999899 - HAL1b LINE L1 -787 561 444 1893 181 0 3 chr3 12524686 12524979 -214999599 - AluJb SINE Alu -20 292 1 1400 137 4 26 chr3 12524979 12525212 -214999366 - MER2 DNA MER2_type -107 238 11 531 273 148 14 chr3 12525877 12526086 -214998492 + MIR SINE MIR 14 250 -12 1861 132 15 4 chr3 12526111 12526383 -214998195 - AluSg SINE Alu -13 297 23 2205 110 0 13 chr3 12526527 12526827 -214997751 + AluSx SINE Alu 1 296 -16 827 137 0 8 chr3 12527209 12527333 -214997245 + AluJo SINE Alu 12 134 -178 185 268 36 0 chr3 12527384 12527440 -214997138 + MIR SINE MIR 7 64 -198 1765 170 3 10 chr3 12527444 12527733 -214996845 + AluJo SINE Alu 1 287 -25 400 257 96 0 chr3 12527752 12527888 -214996690 + MIR SINE MIR 110 258 -4 939 181 0 0 chr3 12527961 12528110 -214996468 - AluJb SINE Alu -26 286 138 993 217 58 4 chr3 12528153 12528411 -214996167 - L1ME3 LINE L1 -1 6161 5890 1065 79 0 0 chr3 12528556 12528683 -214995895 + 7SLRNA srpRNA srpRNA 75 201 -119 2212 104 13 7 chr3 12529090 12529388 -214995190 - AluSx SINE Alu -10 302 3 183 239 0 70 chr3 12529774 12529845 -214994733 + MIR SINE MIR 163 228 -34 1861 175 68 0 chr3 12529863 12530189 -214994389 - MER7A DNA MER2_type 0 346 1 211 222 143 0 chr3 12530285 12530348 -214994230 - L2 LINE L2 -1 3312 3241 575 286 38 5 chr3 12531034 12531219 -214993359 + MIR SINE MIR 54 244 -18 180 0 0 0 chr3 12531437 12531457 -214993121 + (TG)n Simple_repeat Simple_repeat 2 21 0 1867 135 18 7 chr3 12531604 12531908 -214992670 - AluSx SINE Alu 0 307 1 22 0 0 0 chr3 12533367 12533389 -214991189 + AT_rich Low_complexity Low_complexity 1 22 0 1780 157 11 0 chr3 12533937 12534223 -214990355 - AluJb SINE Alu -23 289 1 230 326 73 59 chr3 12534326 12534614 -214989964 - L2 LINE L2 -38 3234 2943 28 61 0 0 chr3 12534985 12535034 -214989544 + AT_rich Low_complexity Low_complexity 1 49 0 1655 183 7 10 chr3 12535166 12535461 -214989117 - AluJo SINE Alu -16 296 3 486 240 185 7 chr3 12535592 12535738 -214988840 - MER5A DNA MER1_type 0 189 18 21 0 0 0 chr3 12535884 12535905 -214988673 + AT_rich Low_complexity Low_complexity 1 21 0 2622 57 0 13 chr3 12535991 12536306 -214988272 - AluY SINE Alu 0 311 1 1537 189 23 27 chr3 12536949 12537250 -214987328 - AluJo SINE Alu -12 300 1 2155 117 7 10 chr3 12537848 12538148 -214986430 - AluSx SINE Alu -13 299 1 2091 113 21 0 chr3 12539087 12539369 -214985209 + AluSq SINE Alu 1 288 -25 392 184 61 41 chr3 12541946 12542044 -214982534 - Charlie1 DNA MER1_type -255 2506 2407 834 172 77 107 chr3 12542052 12542157 -214982421 - Charlie1 DNA MER1_type -613 2148 2041 1658 126 22 0 chr3 12542157 12542388 -214982190 + AluSx SINE Alu 1 236 -76 834 172 77 107 chr3 12542388 12542543 -214982035 - Charlie1 DNA MER1_type -720 2041 1896 1289 241 100 47 chr3 12542545 12543017 -214981561 - Charlie1 DNA MER1_type -977 1784 1228 1043 198 171 0 chr3 12543017 12543275 -214981303 - MER2 DNA MER2_type 0 345 44 2212 187 202 59 chr3 12543330 12543738 -214980840 - Charlie1 DNA MER1_type -1524 1237 889 1216 208 36 46 chr3 12543738 12544041 -214980537 + AluJo SINE Alu 1 300 -12 2212 187 202 59 chr3 12544041 12544665 -214979913 - Charlie1 DNA MER1_type -1872 889 57 227 226 32 16 chr3 12545008 12545070 -214979508 + MIR SINE MIR 83 145 -117 3477 118 135 38 chr3 12545099 12545480 -214979098 - Tigger1 DNA MER2_type 0 2418 2075 1964 133 43 7 chr3 12545480 12545781 -214978797 - AluSx SINE Alu 0 312 1 3477 118 135 38 chr3 12545781 12546057 -214978521 - Tigger1 DNA MER2_type -343 2075 1697 191 167 0 48 chr3 12547312 12547354 -214977224 - MIR SINE MIR -6 256 217 1624 160 34 27 chr3 12547825 12548119 -214976459 + AluJb SINE Alu 1 296 -16 307 164 0 15 chr3 12548684 12548751 -214975827 - Charlie5 DNA MER1_type -2505 107 42 1048 90 131 95 chr3 12549283 12549505 -214975073 + MER30 DNA MER1_type 1 230 0 22 56 0 0 chr3 12554637 12554673 -214969905 + AT_rich Low_complexity Low_complexity 1 36 0 29 0 0 0 chr3 12555775 12555804 -214968774 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 12557307 12557328 -214967250 + AT_rich Low_complexity Low_complexity 1 21 0 1354 66 6 6 chr3 12560498 12560679 -214963899 + AluYa5 SINE Alu 118 298 -13 2176 129 0 0 chr3 12561100 12561403 -214963175 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr3 12561747 12561768 -214962810 + AT_rich Low_complexity Low_complexity 1 21 0 2230 109 3 0 chr3 12561773 12562067 -214962511 + AluSp SINE Alu 1 295 -18 655 189 24 0 chr3 12562084 12562211 -214962367 - MER94 DNA DNA -4 130 1 30 0 0 0 chr3 12562411 12562441 -214962137 + AT_rich Low_complexity Low_complexity 1 30 0 285 185 266 81 chr3 12562509 12562817 -214961761 - L1MC5 LINE L1 -399 7562 7198 1292 157 114 12 chr3 12562828 12563171 -214961407 - Charlie1 DNA MER1_type -41 2720 2343 1528 240 53 32 chr3 12563286 12563811 -214960767 - L1MC5 LINE L1 -813 7148 6613 1564 133 92 19 chr3 12564078 12564433 -214960145 - Tigger3(Golem) DNA MER2_type -2 3027 3 1842 124 4 4 chr3 12564932 12565199 -214959379 - AluSx SINE Alu -1 311 45 21 36 0 0 chr3 12565409 12565437 -214959141 + AT_rich Low_complexity Low_complexity 1 28 0 365 274 26 26 chr3 12565653 12565770 -214958808 + MIR SINE MIR 146 262 0 21 57 0 0 chr3 12565979 12566014 -214958564 + AT_rich Low_complexity Low_complexity 1 35 0 1677 183 3 37 chr3 12566442 12566765 -214957813 - AluJo SINE Alu 0 312 1 490 213 127 27 chr3 12566771 12566960 -214957618 + L1MC5 LINE L1 7687 7902 -59 707 189 8 0 chr3 12566960 12567082 -214957496 - FLAM_C SINE Alu -10 123 1 490 213 127 27 chr3 12567082 12567113 -214957465 + L1MC5 LINE L1 7902 7929 -32 324 0 0 0 chr3 12567704 12567740 -214956838 + (TG)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr3 12567740 12567761 -214956817 + AT_rich Low_complexity Low_complexity 1 21 0 2111 104 4 0 chr3 12567815 12568129 -214956449 - AluSg SINE Alu 0 315 1 22 0 0 0 chr3 12568869 12568891 -214955687 + AT_rich Low_complexity Low_complexity 1 22 0 1264 166 107 45 chr3 12569627 12569917 -214954661 - AluJo SINE Alu -4 308 1 1034 147 16 27 chr3 12569932 12570116 -214954462 - AluJb SINE Alu -15 297 116 342 206 162 29 chr3 12570848 12570984 -214953594 + L1MC5 LINE L1 7760 7913 -48 21 36 0 0 chr3 12570993 12571021 -214953557 + AT_rich Low_complexity Low_complexity 1 28 0 2401 76 0 0 chr3 12571538 12571839 -214952739 - AluY SINE Alu -10 301 1 30 27 0 0 chr3 12571844 12571881 -214952697 + AT_rich Low_complexity Low_complexity 1 37 0 2216 53 0 28 chr3 12571992 12572274 -214952304 - AluY SINE Alu -9 302 29 1991 99 0 0 chr3 12572618 12572871 -214951707 + AluSq SINE Alu 44 296 -17 2018 102 0 0 chr3 12572927 12573181 -214951397 - AluSq SINE Alu -59 254 1 957 178 38 0 chr3 12573474 12573631 -214950947 + AluJb SINE Alu 137 299 -13 287 302 94 0 chr3 12575108 12575204 -214949374 - MIR SINE MIR -102 160 56 280 301 115 18 chr3 12575239 12575352 -214949226 - MIR SINE MIR -66 142 19 942 106 8 8 chr3 12575360 12575492 -214949086 - FLAM_C SINE Alu -1 132 1 23 33 0 0 chr3 12576091 12576121 -214948457 + AT_rich Low_complexity Low_complexity 1 30 0 271 239 0 37 chr3 12577564 12577673 -214946905 + CT-rich Low_complexity Low_complexity 4 108 0 476 269 94 29 chr3 12578672 12578843 -214945735 - L2 LINE L2 -4 3309 3128 2328 115 0 6 chr3 12579106 12579418 -214945160 - AluSq SINE Alu -3 310 1 1357 148 15 0 chr3 12579630 12579833 -214944745 - AluSq SINE Alu -10 303 98 1925 149 3 34 chr3 12580278 12580453 -214944125 - AluJb SINE Alu 0 312 150 2312 92 14 0 chr3 12580453 12580746 -214943832 - AluSx SINE Alu -14 298 2 1925 149 3 34 chr3 12580746 12580892 -214943686 - AluJb SINE Alu -162 150 1 1501 199 7 14 chr3 12580963 12581240 -214943338 - AluJb SINE Alu -37 275 1 2099 130 10 7 chr3 12581321 12581620 -214942958 + AluSq SINE Alu 1 300 -13 632 137 0 0 chr3 12582117 12582212 -214942366 - L1MC1 LINE L1 -17 6316 6222 189 132 0 0 chr3 12584474 12584512 -214940066 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 21 36 0 0 chr3 12585496 12585524 -214939054 + AT_rich Low_complexity Low_complexity 1 28 0 525 283 107 30 chr3 12586976 12587209 -214937369 + MIR SINE MIR 12 262 0 2393 85 7 0 chr3 12589017 12589323 -214935255 + AluSp SINE Alu 1 308 -5 252 0 0 0 chr3 12591572 12591600 -214932978 + (TG)n Simple_repeat Simple_repeat 2 29 0 2354 98 0 0 chr3 12591770 12592067 -214932511 + AluSx SINE Alu 1 297 -15 1219 185 19 9 chr3 12592765 12592981 -214931597 - MER20 DNA MER1_type 0 219 2 376 319 71 24 chr3 12594216 12594385 -214930193 - MIR3 SINE MIR -11 197 21 1419 178 29 25 chr3 12594983 12595258 -214929320 + AluJo SINE Alu 7 282 -30 26 0 0 0 chr3 12595400 12595426 -214929152 + AT_rich Low_complexity Low_complexity 1 26 0 2131 106 0 14 chr3 12596805 12597097 -214927481 + AluSg SINE Alu 1 288 -22 2131 114 7 7 chr3 12597831 12598128 -214926450 + AluSc SINE Alu 1 297 -12 1801 147 52 0 chr3 12598659 12598945 -214925633 + AluJb SINE Alu 2 302 -10 30 27 0 0 chr3 12599920 12599957 -214924621 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr3 12600015 12600038 -214924540 + (T)n Simple_repeat Simple_repeat 1 23 0 2338 87 3 0 chr3 12600056 12600356 -214924222 + AluY SINE Alu 2 302 -9 180 176 0 0 chr3 12600367 12600401 -214924177 + GA-rich Low_complexity Low_complexity 3 36 0 2276 91 3 0 chr3 12600567 12600853 -214923725 + AluY SINE Alu 1 287 -24 21 36 0 0 chr3 12600853 12600881 -214923697 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr3 12600909 12600956 -214923622 + AT_rich Low_complexity Low_complexity 1 47 0 23 54 0 0 chr3 12601275 12601312 -214923266 + AT_rich Low_complexity Low_complexity 1 37 0 715 211 8 8 chr3 12601502 12601625 -214922953 + FLAM_A SINE Alu 1 123 -10 22 0 0 0 chr3 12601664 12601686 -214922892 + AT_rich Low_complexity Low_complexity 1 22 0 1489 181 38 14 chr3 12601694 12601987 -214922591 + AluJo SINE Alu 1 300 -12 268 274 32 65 chr3 12602103 12602227 -214922351 + L1ME LINE L1 5572 5691 -430 2383 108 12 0 chr3 12602227 12602551 -214922027 - HSMAR1 DNA Mariner -2 1285 958 372 61 16 55 chr3 12602849 12603095 -214921483 + AluY SINE Alu 1 301 0 10994 96 6 12 chr3 12603410 12605005 -214919573 + L1P LINE L1 2119 3703 -2443 12159 97 9 32 chr3 12605109 12607019 -214917559 - L1P3 LINE L1 -4547 1914 51 480 305 106 4 chr3 12607309 12607440 -214917138 - MIR SINE MIR -2 260 144 2240 155 12 54 chr3 12607440 12607670 -214916908 - MLT1B LTR MaLR 0 390 183 2259 113 0 0 chr3 12607670 12607971 -214916607 - AluSx SINE Alu -11 301 1 2240 155 12 54 chr3 12607971 12608147 -214916431 - MLT1B LTR MaLR -207 183 1 480 305 106 4 chr3 12608147 12608251 -214916327 - MIR SINE MIR -118 144 1 713 177 0 54 chr3 12608430 12608560 -214916018 + AluJo SINE Alu 38 160 -152 513 235 84 47 chr3 12608827 12609040 -214915538 + MIR SINE MIR 34 254 -8 507 184 11 132 chr3 12609267 12609441 -214915137 + MER5A DNA MER1_type 3 155 -34 231 88 0 0 chr3 12609578 12609612 -214914966 + (TG)n Simple_repeat Simple_repeat 2 35 0 1423 174 38 50 chr3 12610169 12610508 -214914070 + LTR37A LTR ERV1 92 426 0 2823 129 60 19 chr3 12610527 12610941 -214913637 + Charlie1 DNA MER1_type 1835 2273 -488 1992 120 3 19 chr3 12610941 12611249 -214913329 + AluSx SINE Alu 1 303 -9 2823 129 60 19 chr3 12611249 12611316 -214913262 + Charlie1 DNA MER1_type 2273 2336 -425 344 147 15 15 chr3 12611423 12611491 -214913087 - L1MB2 LINE L1 -98 6073 6006 2246 81 0 3 chr3 12611493 12611777 -214912801 + AluY SINE Alu 1 283 -28 441 0 0 0 chr3 12611777 12611826 -214912752 + (CA)n Simple_repeat Simple_repeat 2 50 0 617 231 20 7 chr3 12611826 12611973 -214912605 + MER39 LTR ERV1 540 688 -19 2122 136 0 0 chr3 12612042 12612336 -214912242 + AluSx SINE Alu 1 294 -18 459 365 23 23 chr3 12613389 12613649 -214910929 - MIR SINE MIR -2 260 1 1026 154 0 6 chr3 12614686 12614848 -214909730 + MLT1A2 LTR MaLR 1 161 -213 663 225 8 0 chr3 12614860 12614989 -214909589 + FLAM_C SINE Alu 3 132 -11 1264 185 5 14 chr3 12615004 12615226 -214909352 - AluJo SINE Alu -92 220 1 204 268 36 0 chr3 12615230 12615286 -214909292 - MIR SINE MIR -198 64 7 821 137 0 8 chr3 12615337 12615461 -214909117 - AluJo SINE Alu -178 134 12 2293 94 0 7 chr3 12615843 12616141 -214908437 - AluSx SINE Alu -16 296 1 563 358 46 43 chr3 12617027 12617351 -214907227 + L2 LINE L2 2933 3257 -15 2035 154 0 0 chr3 12617357 12617663 -214906915 + AluSx SINE Alu 1 306 -6 2250 121 0 0 chr3 12617668 12617998 -214906580 + AluSx SINE Alu 1 330 0 339 181 4 2 chr3 12618254 12618503 -214906075 + AluJo SINE Alu 1 298 -4 434 265 77 8 chr3 12619402 12619519 -214905059 - L2 LINE L2 -1 3312 3188 6268 100 20 0 chr3 12619565 12620610 -214903968 - L1PA7 LINE L1 0 6154 5143 718 239 56 0 chr3 12621243 12621423 -214903155 - MIR SINE MIR -59 203 14 2142 110 17 3 chr3 12621643 12621934 -214902644 + AluSg SINE Alu 1 295 -15 664 171 267 0 chr3 12622934 12623080 -214901498 - MER5A DNA MER1_type -4 185 1 321 148 0 0 chr3 12623528 12623582 -214900996 + Alu SINE Alu 249 302 0 445 261 43 9 chr3 12623795 12623910 -214900668 - MIR SINE MIR -62 200 82 999 266 84 68 chr3 12624727 12624966 -214899612 + MLT1K LTR MaLR 189 438 -150 2982 116 19 7 chr3 12624966 12625387 -214899191 + MSTA LTR MaLR 3 428 0 999 266 84 68 chr3 12625387 12625541 -214899037 + MLT1K LTR MaLR 438 588 0 1276 216 150 41 chr3 12625641 12626098 -214898480 + MLT1G3 LTR MaLR 21 593 0 427 201 223 14 chr3 12626111 12626250 -214898328 + MER117 DNA MER1_type 4 171 -26 2385 117 44 0 chr3 12626316 12626682 -214897896 + L1PA13 LINE L1 5799 6179 0 548 217 255 27 chr3 12626734 12626918 -214897660 + MIR SINE MIR 23 248 -14 2248 117 9 20 chr3 12627113 12627454 -214897124 + MER1B DNA MER1_type 1 337 -2 1926 214 87 37 chr3 12627489 12628027 -214896551 + L1ME1 LINE L1 5600 6164 -2 492 205 73 40 chr3 12628035 12628186 -214896392 + MER103 DNA DNA 11 166 0 234 0 0 0 chr3 12628482 12628508 -214896070 + (CA)n Simple_repeat Simple_repeat 2 27 0 3193 105 16 2 chr3 12628549 12628977 -214895601 - MER57B LTR ERV1 0 434 1 12919 104 91 59 chr3 12628977 12629354 -214895224 - MER57B-int LTR ERV1 0 7537 7173 2421 68 0 3 chr3 12629354 12629649 -214894929 + AluY SINE Alu 1 294 -17 12919 104 91 59 chr3 12629649 12631433 -214893145 - MER57B-int LTR ERV1 -364 7173 5307 6014 131 57 29 chr3 12631424 12633086 -214891492 - MER57B-int LTR ERV1 -1702 4273 2186 * 331 78 59 0 chr3 12633082 12633133 -214891445 - MER57B-int LTR ERV1 -3726 2220 2167 * 4767 150 55 21 chr3 12633109 12634624 -214889954 - MER57B-int LTR ERV1 -4159 2371 288 4346 140 29 6 chr3 12634621 12635278 -214889300 - MER57B-int LTR ERV1 -6865 672 1 * 3043 120 21 2 chr3 12635278 12635704 -214888874 - MER57B LTR ERV1 0 434 1 389 266 0 39 chr3 12635719 12635847 -214888731 + L1ME4a LINE L1 5987 6109 -12 477 237 50 36 chr3 12635900 12636039 -214888539 - MIR SINE MIR -5 257 117 578 235 150 43 chr3 12636244 12636684 -214887894 + MLT1H LTR MaLR 3 555 0 181 0 0 0 chr3 12636797 12636817 -214887761 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2085 131 3 0 chr3 12636817 12637100 -214887478 - AluSx SINE Alu -1 303 1 22 0 0 0 chr3 12637787 12637809 -214886769 + AT_rich Low_complexity Low_complexity 1 22 0 228 184 0 0 chr3 12638339 12638388 -214886190 + CT-rich Low_complexity Low_complexity 2 50 0 190 301 118 11 chr3 12638513 12638606 -214885972 - L2 LINE L2 -8 3264 3162 32 0 0 0 chr3 12638719 12638751 -214885827 + AT_rich Low_complexity Low_complexity 1 32 0 230 140 53 0 chr3 12638838 12638895 -214885683 + L1MD3 LINE L1 7936 7995 0 342 250 93 9 chr3 12639474 12639582 -214884996 + MIR SINE MIR 64 180 -82 291 194 16 0 chr3 12639652 12639714 -214884864 - Charlie8 DNA MER1_type -1008 1409 1347 533 214 219 16 chr3 12639715 12639902 -214884676 - MLT1A2 LTR MaLR 0 549 325 397 220 83 133 chr3 12639903 12640144 -214884434 - Charlie8 DNA MER1_type -2186 231 3 724 173 0 8 chr3 12640261 12640388 -214884190 + MER5A DNA MER1_type 1 126 -63 664 240 0 0 chr3 12640405 12640534 -214884044 - MER5B DNA MER1_type 0 178 50 260 87 65 0 chr3 12640875 12640921 -214883657 + CT-rich Low_complexity Low_complexity 3 51 0 1542 201 7 0 chr3 12640921 12641195 -214883383 - AluJo SINE Alu -36 276 1 211 327 78 65 chr3 12641279 12641432 -214883146 - L2 LINE L2 -292 2980 2826 392 157 135 22 chr3 12641478 12641567 -214883011 - MLT2D LTR ERVL -1 396 298 801 144 0 8 chr3 12641581 12641699 -214882879 - FLAM_C SINE Alu -13 130 14 1297 174 64 77 chr3 12641704 12642031 -214882547 - MLT2D LTR ERVL -91 323 1 1596 216 92 22 chr3 12642072 12642442 -214882136 + MSTD LTR MaLR 1 396 0 286 315 164 25 chr3 12642805 12643208 -214881370 - L2 LINE L2 -665 2649 2191 300 281 48 68 chr3 12643762 12643908 -214880670 + MIR SINE MIR 25 167 -95 216 325 68 34 chr3 12643931 12644048 -214880530 - L2 LINE L2 -5 3308 3188 772 240 168 41 chr3 12644147 12644439 -214880139 - MER102a DNA MER1_type 0 330 2 1219 217 53 53 chr3 12645569 12645928 -214878650 - MLT1A2 LTR MaLR -15 359 1 180 0 0 0 chr3 12646336 12646356 -214878222 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 934 102 0 0 chr3 12646361 12646479 -214878099 - AluSq/x SINE Alu -194 118 1 2229 121 0 0 chr3 12646749 12647056 -214877522 + AluSx SINE Alu 1 307 -5 227 305 62 23 chr3 12647127 12647255 -214877323 + L2 LINE L2 1889 2021 -1293 1456 160 95 0 chr3 12648362 12648625 -214875953 - AluJb SINE Alu -24 288 1 25 0 0 0 chr3 12648633 12648658 -214875920 + AT_rich Low_complexity Low_complexity 1 25 0 2154 116 0 13 chr3 12648721 12648852 -214875726 + AluSx SINE Alu 5 136 -176 2308 93 16 7 chr3 12648852 12649162 -214875416 + AluSq SINE Alu 1 313 0 2154 116 0 13 chr3 12649162 12649341 -214875237 + AluSx SINE Alu 136 311 -1 2413 75 0 7 chr3 12649433 12649725 -214874853 + AluSc SINE Alu 1 290 -19 242 250 69 0 chr3 12649737 12649809 -214874769 - L1ME LINE L1 -513 5608 5532 1422 176 55 24 chr3 12649887 12650177 -214874401 + AluJo SINE Alu 1 299 -13 2244 114 0 9 chr3 12650179 12650494 -214874084 + AluSx SINE Alu 1 312 0 1053 163 11 0 chr3 12650918 12651102 -214873476 - AluJo SINE Alu -6 306 121 1936 98 0 4 chr3 12651426 12651680 -214872898 - AluSq SINE Alu -7 306 54 718 89 0 0 chr3 12651680 12651770 -214872808 - AluS SINE Alu -221 91 2 889 196 31 0 chr3 12651840 12652003 -214872575 - AluJb SINE Alu -9 303 136 26 30 0 0 chr3 12652025 12652058 -214872520 + AT_rich Low_complexity Low_complexity 1 33 0 260 237 0 26 chr3 12652969 12653045 -214871533 + GA-rich Low_complexity Low_complexity 3 76 0 23 68 0 0 chr3 12654374 12654418 -214870160 + AT_rich Low_complexity Low_complexity 1 44 0 298 190 0 52 chr3 12654808 12654866 -214869712 - MIR SINE MIR -11 251 197 478 248 39 31 chr3 12654870 12654999 -214869579 - L2 LINE L2 -1 3312 3183 245 245 21 21 chr3 12655020 12655114 -214869464 + GA-rich Low_complexity Low_complexity 3 96 0 584 270 155 9 chr3 12655541 12655879 -214868699 - MLT1H LTR MaLR -15 534 122 238 304 43 0 chr3 12655985 12656077 -214868501 - MIR SINE MIR -66 196 101 1437 142 52 4 chr3 12656254 12656473 -214868105 + MER7A DNA MER2_type 1 228 -118 661 243 83 69 chr3 12656473 12656761 -214867817 + MER101B LTR ERV1 1 292 -278 258 206 40 103 chr3 12656808 12656934 -214867644 + MER101 LTR ERV1 328 445 -29 2309 110 0 0 chr3 12656949 12657250 -214867328 - AluSx SINE Alu -11 301 1 411 213 12 0 chr3 12657281 12657361 -214867217 + MER7A DNA MER2_type 257 337 0 507 264 153 32 chr3 12657361 12657577 -214867001 + MIR SINE MIR 15 256 -6 387 222 37 74 chr3 12658848 12659010 -214865568 + HAL1 LINE L1 2263 2418 -89 2473 62 0 10 chr3 12659071 12659379 -214865199 + AluY SINE Alu 1 305 -6 251 54 27 0 chr3 12659984 12660021 -214864557 + (TTTC)n Simple_repeat Simple_repeat 3 40 0 1072 181 51 0 chr3 12660684 12660861 -214863717 + MER5A DNA MER1_type 1 186 -3 1051 253 78 38 chr3 12660872 12661370 -214863208 - MER113 DNA MER1_type? 0 521 4 357 24 0 0 chr3 12661386 12661428 -214863150 + (TG)n Simple_repeat Simple_repeat 1 42 0 256 282 113 0 chr3 12662041 12662165 -214862413 - MIR SINE MIR -15 247 110 702 270 32 10 chr3 12662167 12662446 -214862132 - LTR16B LTR ERVL -2 462 88 191 0 0 94 chr3 12662495 12662527 -214862051 + (T)n Simple_repeat Simple_repeat 1 29 0 7535 58 0 5 chr3 12662541 12663884 -214860694 - L1PA6 LINE L1 0 6154 4820 2097 134 0 3 chr3 12664110 12664408 -214860170 - AluJb SINE Alu -15 297 1 282 267 59 0 chr3 12664889 12664990 -214859588 - HAL1b LINE L1 -798 550 444 1896 178 0 3 chr3 12664997 12665290 -214859288 - AluJb SINE Alu -20 292 1 1407 137 4 26 chr3 12665290 12665523 -214859055 - MER2 DNA MER2_type -107 238 11 596 273 148 14 chr3 12666188 12666397 -214858181 + MIR SINE MIR 14 250 -12 2261 76 3 23 chr3 12666422 12666725 -214857853 - AluY SINE Alu -14 297 1 2258 117 0 3 chr3 12667368 12667668 -214856910 - AluSx SINE Alu -12 300 2 316 286 38 23 chr3 12668293 12668460 -214856118 - HAL1b LINE L1 -2 6119 1222 2205 115 0 0 chr3 12668491 12668779 -214855799 - AluSx SINE Alu -24 288 1 22 0 0 0 chr3 12670238 12670260 -214854318 + AT_rich Low_complexity Low_complexity 1 22 0 1570 216 92 24 chr3 12670927 12671298 -214853280 - MSTD LTR MaLR 0 396 1 1297 174 64 77 chr3 12671339 12671666 -214852912 + MLT2D LTR ERVL 1 323 -91 897 123 0 0 chr3 12671671 12671793 -214852785 + AluJb SINE Alu 14 135 -177 2185 109 7 0 chr3 12671793 12672087 -214852491 + AluSx SINE Alu 1 296 -16 1975 146 7 7 chr3 12672112 12672413 -214852165 + AluJo SINE Alu 1 301 -11 2153 134 3 7 chr3 12672551 12672857 -214851721 + AluSx SINE Alu 1 305 -7 2095 107 7 0 chr3 12672878 12673158 -214851420 + AluSx SINE Alu 11 292 -20 772 240 168 41 chr3 12674124 12674416 -214850162 + MER102a DNA MER1_type 2 330 0 216 325 68 34 chr3 12674515 12674632 -214849946 + L2 LINE L2 3188 3308 -5 300 281 48 68 chr3 12674655 12674801 -214849777 - MIR SINE MIR -95 167 25 286 315 164 25 chr3 12675355 12675758 -214848820 + L2 LINE L2 2191 2649 -665 1596 216 92 22 chr3 12676121 12676491 -214848087 - MSTD LTR MaLR 0 396 1 1297 174 64 77 chr3 12676532 12676859 -214847719 + MLT2D LTR ERVL 1 323 -91 801 144 0 8 chr3 12676864 12676982 -214847596 + FLAM_C SINE Alu 14 130 -13 392 157 135 22 chr3 12676996 12677085 -214847493 + MLT2D LTR ERVL 298 396 -1 211 327 78 65 chr3 12677131 12677284 -214847294 + L2 LINE L2 2826 2980 -292 1542 201 7 0 chr3 12677368 12677642 -214846936 + AluJo SINE Alu 1 276 -36 260 87 65 0 chr3 12677642 12677688 -214846890 + GA-rich Low_complexity Low_complexity 3 51 0 664 240 0 0 chr3 12678029 12678158 -214846420 + MER5B DNA MER1_type 50 178 0 724 173 0 8 chr3 12678175 12678302 -214846276 - MER5A DNA MER1_type -63 126 1 397 220 83 133 chr3 12678419 12678660 -214845918 + MER102a DNA MER1_type 3 231 -99 533 214 219 16 chr3 12678661 12678848 -214845730 + MLT1H LTR MaLR 325 549 0 291 194 16 0 chr3 12678849 12678911 -214845667 + MER102a DNA MER1_type 249 311 -19 342 250 93 9 chr3 12678981 12679089 -214845489 - MIR SINE MIR -82 180 64 230 140 53 0 chr3 12679668 12679725 -214844853 - L1MD3 LINE L1 0 7995 7936 32 0 0 0 chr3 12679812 12679844 -214844734 + AT_rich Low_complexity Low_complexity 1 32 0 190 301 118 11 chr3 12679957 12680050 -214844528 + L2 LINE L2 3162 3264 -8 228 184 0 0 chr3 12680175 12680224 -214844354 + GA-rich Low_complexity Low_complexity 2 50 0 22 0 0 0 chr3 12680754 12680776 -214843802 + AT_rich Low_complexity Low_complexity 1 22 0 2104 131 3 0 chr3 12681463 12681746 -214842832 + AluSx SINE Alu 1 284 -28 181 0 0 0 chr3 12681746 12681766 -214842812 + (TAA)n Simple_repeat Simple_repeat 2 180 0 578 244 128 47 chr3 12681879 12682319 -214842259 - MLT1H LTR MaLR 0 549 3 438 237 50 36 chr3 12682524 12682663 -214841915 + MIR SINE MIR 117 257 -5 379 266 0 39 chr3 12682716 12682844 -214841734 - L1ME4a LINE L1 -12 6109 5987 2891 124 19 0 chr3 12682859 12683285 -214841293 + MER57B LTR ERV1 1 434 0 4345 140 29 6 chr3 12683285 12683942 -214840636 + MER57B-int LTR ERV1 1 672 -6865 * 4769 146 59 21 chr3 12683939 12685481 -214839097 + PABL_A-int LTR ERV1 288 2220 -3726 * 5986 132 57 21 chr3 12685477 12687137 -214837441 + PABL_A-int LTR ERV1 2186 4041 -1702 * 12739 109 32 3 chr3 12687128 12688912 -214835666 + PABL_A-int LTR ERV1 5307 7143 -394 2279 86 3 0 chr3 12688912 12689204 -214835374 - AluSg SINE Alu -17 293 1 22 0 0 0 chr3 12689944 12689966 -214834612 + AT_rich Low_complexity Low_complexity 1 22 0 1259 166 107 45 chr3 12690702 12690992 -214833586 - AluJo SINE Alu -4 308 1 1036 147 16 27 chr3 12691007 12691191 -214833387 - AluJb SINE Alu -15 297 116 240 170 21 0 chr3 12691743 12691790 -214832788 - L1M2 LINE L1 -5088 1761 1714 398 176 162 29 chr3 12691923 12692059 -214832519 + L1MC5 LINE L1 7760 7913 -48 21 36 0 0 chr3 12692068 12692096 -214832482 + AT_rich Low_complexity Low_complexity 1 28 0 1681 86 0 26 chr3 12692613 12692845 -214831733 - AluSc SINE Alu -16 293 68 492 283 80 32 chr3 12693167 12693418 -214831160 - L2 LINE L2 -619 2695 2433 2497 62 0 10 chr3 12693823 12694131 -214830447 - AluY SINE Alu -6 305 1 422 237 34 62 chr3 12694191 12694368 -214830210 - HAL1 LINE L1 -89 2418 2247 1155 169 59 75 chr3 12695379 12695451 -214829127 - L1M4 LINE L1 -538 5636 5564 1997 161 14 30 chr3 12695451 12695812 -214828766 - THE1A LTR MaLR 0 355 1 1155 169 59 75 chr3 12695812 12696047 -214828531 - L1M4 LINE L1 -610 5564 5327 1796 183 3 7 chr3 12696047 12696347 -214828231 - AluJb SINE Alu -13 299 1 1155 169 59 75 chr3 12696347 12696412 -214828166 - L1M4 LINE L1 -847 5327 5263 3969 173 20 6 chr3 12696453 12697106 -214827472 + MER72 LTR ERV1 1 662 -60 2074 143 20 0 chr3 12697106 12697407 -214827171 - AluSx SINE Alu -5 307 1 2578 68 0 0 chr3 12697420 12697727 -214826851 - AluY SINE Alu -4 307 1 200 162 0 0 chr3 12698328 12698365 -214826213 - L2 LINE L2 -3 3310 3274 25 31 0 0 chr3 12699160 12699192 -214825386 + AT_rich Low_complexity Low_complexity 1 32 0 481 260 10 0 chr3 12699990 12700094 -214824484 + FLAM_C SINE Alu 7 111 -32 605 228 46 85 chr3 12700534 12700600 -214823978 - MLT1J LTR MaLR -5 506 439 1428 165 9 91 chr3 12700600 12700940 -214823638 + AluJo SINE Alu 1 312 0 605 228 46 85 chr3 12700940 12700980 -214823598 - MLT1J LTR MaLR -72 439 399 2402 49 0 7 chr3 12700980 12701298 -214823280 + AluY SINE Alu 1 316 0 605 228 46 85 chr3 12701298 12701470 -214823108 - MLT1J LTR MaLR -112 399 237 2326 97 0 3 chr3 12702184 12702484 -214822094 + AluSx SINE Alu 1 299 -13 869 163 44 12 chr3 12703031 12703191 -214821387 - AluJb SINE Alu -146 166 2 2213 68 64 20 chr3 12703244 12703540 -214821038 - AluY SINE Alu -2 309 1 2182 111 0 55 chr3 12703555 12703880 -214820698 - AluSg SINE Alu -1 309 3 2200 114 7 3 chr3 12703917 12704225 -214820353 - AluY SINE Alu -2 309 1 325 161 32 0 chr3 12704469 12704531 -214820047 + MLT1K LTR MaLR 508 571 -17 2100 119 19 10 chr3 12704623 12705118 -214819460 + AluSq SINE Alu 1 313 0 387 331 22 11 chr3 12705150 12705328 -214819250 + MIR SINE MIR 33 212 -50 848 217 61 35 chr3 12705700 12705783 -214818795 - MIR SINE MIR -21 241 162 1957 162 39 21 chr3 12705783 12706166 -214818412 + MLT1B LTR MaLR 1 390 0 848 217 61 35 chr3 12706166 12706312 -214818266 - MIR SINE MIR -100 162 6 1936 173 0 0 chr3 12707113 12707425 -214817153 + AluJo SINE Alu 1 312 0 400 331 66 36 chr3 12707849 12708154 -214816424 + HUERS-P1 LTR ERV1 5946 6259 -4 375 96 0 0 chr3 12708156 12708208 -214816370 + LTR26 LTR ERV1 1 52 -551 600 144 19 0 chr3 12708332 12708436 -214816142 - L1M4 LINE L1 -1366 4780 4675 968 188 6 0 chr3 12708436 12708606 -214815972 - MLT1F1 LTR MaLR -392 175 5 1495 278 94 10 chr3 12708610 12709219 -214815359 - L1MC4a LINE L1 -1889 5919 5260 1459 144 8 27 chr3 12709852 12710115 -214814463 + AluSx SINE Alu 28 285 -27 210 292 0 0 chr3 12710322 12710370 -214814208 + polypyrimidine Low_complexity Low_complexity 4 51 0 1149 144 5 51 chr3 12710856 12710991 -214813587 + AluJb SINE Alu 1 126 -186 2015 68 114 11 chr3 12710991 12711272 -214813306 + AluY SINE Alu 1 310 -1 1149 144 5 51 chr3 12711272 12711331 -214813247 + AluJb SINE Alu 126 186 -126 201 162 0 0 chr3 12711549 12711586 -214812992 + A-rich Low_complexity Low_complexity 1 37 0 255 31 0 0 chr3 12711729 12711761 -214812817 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 234 150 0 0 chr3 12712072 12712112 -214812466 + (A)n Simple_repeat Simple_repeat 1 40 0 209 203 34 34 chr3 12712953 12713012 -214811566 + G-rich Low_complexity Low_complexity 3 61 0 286 198 40 28 chr3 12713015 12713270 -214811308 + GA-rich Low_complexity Low_complexity 1 258 0 1109 190 19 9 chr3 12714407 12714623 -214809955 + MER20 DNA MER1_type 2 219 0 8142 51 57 1 chr3 12715273 12716295 -214808283 + SVA Other Other 330 1406 0 817 163 80 21 chr3 12716312 12716510 -214808068 - L1ME LINE L1 -723 5443 5236 677 103 62 0 chr3 12716513 12716631 -214807947 - LTR49 LTR ERV1 -3 592 486 616 190 10 0 chr3 12716637 12716737 -214807841 + LTR49-int LTR ERV1 1 101 -6230 2112 134 0 7 chr3 12716738 12717043 -214807535 - AluSx SINE Alu -9 303 1 406 255 6 56 chr3 12717406 12717435 -214807143 + MIR SINE MIR 12 41 -221 1910 163 0 3 chr3 12717435 12717730 -214806848 + AluJo SINE Alu 4 297 -15 406 255 6 56 chr3 12717730 12717861 -214806717 + MIR SINE MIR 41 164 -98 301 218 150 54 chr3 12718025 12718172 -214806406 - MIR3 SINE MIR -12 196 36 230 288 123 0 chr3 12718194 12718267 -214806311 - L2 LINE L2 -3 3310 3229 2337 94 0 3 chr3 12718396 12718693 -214805885 - AluSx SINE Alu -16 296 1 1084 214 23 9 chr3 12718791 12718965 -214805613 - AluJo SINE Alu -5 307 128 258 32 0 0 chr3 12718965 12718996 -214805582 + (TTTTA)n Simple_repeat Simple_repeat 3 33 0 1084 214 23 9 chr3 12718996 12719041 -214805537 - AluJo SINE Alu -184 128 85 393 138 17 0 chr3 12719041 12719099 -214805479 - AluSx SINE Alu -52 248 190 679 74 11 11 chr3 12719100 12719195 -214805383 - AluSx SINE Alu -174 138 44 667 167 32 8 chr3 12719198 12719324 -214805254 - AluJo/FLAM SINE Alu -172 130 2 26 64 0 0 chr3 12720033 12720080 -214804498 + AT_rich Low_complexity Low_complexity 1 47 0 27 29 0 0 chr3 12720108 12720142 -214804436 + AT_rich Low_complexity Low_complexity 1 34 0 1103 222 64 53 chr3 12721450 12721749 -214802829 - L1M4 LINE L1 -1898 4248 3943 2340 89 0 13 chr3 12721749 12722053 -214802525 - AluSc SINE Alu -9 300 1 1103 222 64 53 chr3 12722053 12722113 -214802465 - L1M4 LINE L1 -2203 3943 3885 1100 225 99 48 chr3 12722113 12722581 -214801997 - LTR8A LTR ERV1 0 727 117 1772 150 21 0 chr3 12723578 12723858 -214800720 + AluJo SINE Alu 1 286 -26 2199 107 0 10 chr3 12723884 12724173 -214800405 + AluSx SINE Alu 1 286 -26 239 83 83 48 chr3 12724482 12724566 -214800012 + (TTGTG)n Simple_repeat Simple_repeat 2 88 0 2097 123 0 7 chr3 12724898 12725225 -214799353 - AluJb SINE Alu 0 312 1 626 262 22 22 chr3 12725232 12725415 -214799163 + MIR SINE MIR 29 211 -51 1560 260 135 39 chr3 12725762 12726296 -214798282 + MLT1K LTR MaLR 4 588 0 2346 87 0 13 chr3 12726533 12726833 -214797745 + AluSq SINE Alu 1 296 -17 2369 145 15 3 chr3 12727146 12727278 -214797300 + L1P5 LINE L1 5012 5141 -1013 2038 119 0 14 chr3 12727278 12727588 -214796990 + AluSx SINE Alu 1 306 0 2369 145 15 3 chr3 12727588 12728028 -214796550 + L1P5 LINE L1 5141 5590 -564 1969 131 3 10 chr3 12728045 12728342 -214796236 - AluSx SINE Alu -17 295 1 264 81 0 0 chr3 12728342 12728379 -214796199 + MLT1F1 LTR MaLR 530 566 -1 25 31 0 0 chr3 12728592 12728624 -214795954 + AT_rich Low_complexity Low_complexity 1 32 0 2076 130 3 0 chr3 12728663 12728978 -214795600 + AluSx SINE Alu 1 312 0 584 249 64 118 chr3 12729098 12729411 -214795167 + L2 LINE L2 2966 3261 -11 282 303 13 34 chr3 12729422 12729581 -214794997 + GA-rich Low_complexity Low_complexity 1 155 0 183 194 0 0 chr3 12730583 12730619 -214793959 + MIR SINE MIR 109 144 -118 934 187 0 0 chr3 12730738 12730893 -214793685 + FRAM SINE Alu 1 155 -11 189 0 0 0 chr3 12730921 12730942 -214793636 + (A)n Simple_repeat Simple_repeat 1 21 0 211 275 46 46 chr3 12731305 12731414 -214793164 - MIR3 SINE MIR -10 198 90 442 204 34 109 chr3 12731463 12731610 -214792968 - L2 LINE L2 0 3272 3137 258 32 0 0 chr3 12731996 12732027 -214792551 + (TC)n Simple_repeat Simple_repeat 2 32 0 225 0 0 0 chr3 12732029 12732054 -214792524 + (CA)n Simple_repeat Simple_repeat 1 25 0 652 266 91 36 chr3 12732065 12732339 -214792239 + MLT1K LTR MaLR 138 426 -162 2194 112 3 0 chr3 12732339 12732634 -214791944 + AluSx SINE Alu 1 296 -16 2129 98 4 4 chr3 12732764 12733039 -214791539 + AluSx SINE Alu 14 288 -24 266 119 0 24 chr3 12733057 12733099 -214791479 + Tigger1 DNA MER2_type 1579 1619 -799 828 229 0 0 chr3 12733396 12733540 -214791038 + FRAM SINE Alu 9 152 -24 4738 137 37 18 chr3 12733718 12734537 -214790041 - L1MB4 LINE L1 -10 6170 5337 2133 103 31 0 chr3 12734539 12734829 -214789749 + AluSx SINE Alu 1 299 -13 1746 218 8 8 chr3 12734853 12735243 -214789335 - L1MB4 LINE L1 -940 5206 4817 1157 127 12 0 chr3 12735245 12735411 -214789167 - AluSg/x SINE Alu -14 296 129 681 198 41 8 chr3 12735566 12735687 -214788891 - FLAM_C SINE Alu -17 126 2 2568 212 26 46 chr3 12735879 12736529 -214788049 - L1ME1 LINE L1 -5 6161 5525 504 262 116 39 chr3 12737369 12737602 -214786976 + MIR SINE MIR 12 262 0 2320 99 7 0 chr3 12739411 12739715 -214784863 + AluSx SINE Alu 1 306 -6 586 288 101 10 chr3 12739715 12739913 -214784665 + MIR SINE MIR 47 262 0 445 307 163 34 chr3 12739971 12740770 -214783808 - L2 LINE L2 -425 2889 1988 246 227 194 34 chr3 12741115 12741299 -214783279 - L2 LINE L2 -340 2932 2725 1146 121 10 66 chr3 12741303 12741501 -214783077 - AluJo SINE Alu -14 298 112 248 154 11 149 chr3 12741624 12741799 -214782779 - AluJo SINE Alu -147 155 5 459 280 48 11 chr3 12741803 12741992 -214782586 - L2 LINE L2 -593 2721 2526 482 249 23 81 chr3 12742160 12742251 -214782327 + MIR SINE MIR 81 159 -103 2315 95 0 0 chr3 12742251 12742546 -214782032 - AluY SINE Alu -16 295 1 482 249 23 81 chr3 12742546 12742627 -214781951 + MIR SINE MIR 159 243 -19 2087 119 0 7 chr3 12742634 12742962 -214781616 - AluSx SINE Alu 0 326 1 1960 154 77 100 chr3 12742964 12743432 -214781146 + LTR49-int LTR ERV1 734 1190 -5141 339 257 0 14 chr3 12743459 12743529 -214781049 + tRNA-Glu-GAG tRNA tRNA 7 75 0 550 115 67 5 chr3 12743583 12743687 -214780891 + LTR49-int LTR ERV1 1290 1934 -2946 2231 98 11 0 chr3 12743782 12744069 -214780509 + AluY SINE Alu 10 299 -12 3778 158 16 52 chr3 12744103 12744386 -214780192 + LTR49-int LTR ERV1 1372 1663 -4668 2248 90 0 7 chr3 12744386 12744674 -214779904 + AluSg1 SINE Alu 5 290 -19 3778 158 16 52 chr3 12744674 12745125 -214779453 + LTR49-int LTR ERV1 1663 2080 -4251 2860 197 18 42 chr3 12745130 12745748 -214778830 - LTR26 LTR ERV1 0 603 1 1453 178 7 7 chr3 12745955 12746236 -214778342 + AluSg SINE Alu 10 290 -20 1592 335 38 46 chr3 12746577 12746612 -214777966 - MER66-int LTR ERV1 -2813 4309 4275 1805 188 0 0 chr3 12746612 12746905 -214777673 + AluJo SINE Alu 3 295 -17 1592 335 38 46 chr3 12746905 12747987 -214776591 - MER66-int LTR ERV1 -2847 4275 3201 490 352 18 26 chr3 12748054 12748327 -214776251 - MER66-int LTR ERV1 -4020 3102 2832 429 100 0 0 chr3 12748399 12748459 -214776119 + Alu SINE Alu 249 308 -4 760 339 47 50 chr3 12748526 12749167 -214775411 - MER66-int LTR ERV1 -5568 1554 916 357 277 11 0 chr3 12749350 12749444 -214775134 - MER66-int LTR ERV1 -5067 1609 1515 693 237 23 92 chr3 12749783 12750045 -214774533 - MER66-int LTR ERV1 -5462 801 558 2019 61 0 8 chr3 12750224 12750471 -214774107 + AluY SINE Alu 1 245 -66 540 214 71 57 chr3 12750642 12750911 -214773667 - LTR48B LTR ERV1 -21 732 382 271 167 45 15 chr3 12750974 12751040 -214773538 - LTR48B LTR ERV1 -449 195 128 261 274 104 19 chr3 12751012 12751118 -214773460 - MER39 LTR ERV1 -582 125 11 * 1107 170 131 0 chr3 12751151 12751357 -214773221 - MER34C LTR ERV1 -352 233 1 2314 181 14 0 chr3 12751359 12751785 -214772793 + L1MB7 LINE L1 5752 6183 -1 1921 112 7 4 chr3 12751804 12752073 -214772505 + AluSp SINE Alu 11 280 -33 345 132 38 0 chr3 12752097 12752150 -214772428 + LTR49 LTR ERV1 535 589 -6 1377 197 19 104 chr3 12752152 12752205 -214772373 - L1M4 LINE L1 -904 5242 5186 2428 66 7 3 chr3 12752205 12752506 -214772072 - AluY SINE Alu -9 302 1 1377 197 19 104 chr3 12752506 12752603 -214771975 - L1M4 LINE L1 -960 5186 5082 1899 159 10 16 chr3 12752603 12752917 -214771661 - AluJo SINE Alu 0 312 1 1377 197 19 104 chr3 12752917 12753197 -214771381 - L1M4 LINE L1 -1064 5082 4848 794 216 13 0 chr3 12753184 12753337 -214771241 + L1ME LINE L1 5425 5579 -587 * 1864 176 6 6 chr3 12753337 12753649 -214770929 + AluJb SINE Alu 1 312 0 2209 132 57 75 chr3 12753731 12754169 -214770409 + LTR2B LTR ERV1 1 430 -60 30 27 0 0 chr3 12755103 12755140 -214769438 + AT_rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr3 12755198 12755221 -214769357 + (T)n Simple_repeat Simple_repeat 1 23 0 2504 46 0 36 chr3 12755239 12755545 -214769033 + AluY SINE Alu 2 296 -15 292 300 85 2 chr3 12755801 12756044 -214768534 + L1MDa LINE L1 2444 2715 -3825 580 223 12 54 chr3 12756460 12756626 -214767952 - L1ME2 LINE L1 -10 6154 5996 564 274 17 58 chr3 12756614 12756784 -214767794 + L1MDa LINE L1 2918 3073 -3467 * 1638 173 0 64 chr3 12756784 12757113 -214767465 - AluJo SINE Alu -4 308 1 564 274 17 58 chr3 12757113 12757234 -214767344 + L1MDa LINE L1 3073 3197 -3343 1091 170 0 11 chr3 12757519 12757701 -214766877 + AluJb SINE Alu 122 301 -11 23 0 0 0 chr3 12757716 12757739 -214766839 + AT_rich Low_complexity Low_complexity 1 23 0 201 266 31 62 chr3 12757796 12757860 -214766718 - MIR SINE MIR -62 146 85 368 256 115 39 chr3 12757901 12758057 -214766521 + L2 LINE L2 3136 3303 -10 328 134 119 15 chr3 12758081 12758148 -214766430 - MLT1B LTR MaLR 0 390 317 1137 125 11 11 chr3 12758155 12758331 -214766247 - AluY SINE Alu 0 311 136 527 91 91 11 chr3 12758331 12758419 -214766159 - MLT1B LTR MaLR -58 332 238 920 141 0 15 chr3 12758682 12758817 -214765761 + FLAM_A SINE Alu 1 133 0 408 71 0 0 chr3 12758965 12759021 -214765557 + (TC)n Simple_repeat Simple_repeat 1 56 0 801 165 0 0 chr3 12759214 12759335 -214765243 + FLAM_C SINE Alu 1 121 -22 2410 60 0 10 chr3 12759345 12759643 -214764935 + AluY SINE Alu 1 295 -16 974 186 11 11 chr3 12760273 12760461 -214764117 + L1PB4 LINE L1 5949 6136 -20 997 116 0 0 chr3 12760468 12760606 -214763972 - AluSg/x SINE Alu -10 300 163 2020 133 3 3 chr3 12760800 12761093 -214763485 - AluSc SINE Alu -12 297 5 21 36 0 0 chr3 12761187 12761215 -214763363 + AT_rich Low_complexity Low_complexity 1 28 0 182 136 23 0 chr3 12762937 12762981 -214761597 + (TG)n Simple_repeat Simple_repeat 1 45 0 22 35 0 0 chr3 12765175 12765204 -214759374 + AT_rich Low_complexity Low_complexity 1 29 0 373 299 85 24 chr3 12765587 12765751 -214758827 - MIR SINE MIR -33 229 56 1494 196 14 4 chr3 12765776 12766052 -214758526 - AluJb SINE Alu -33 279 1 331 235 71 10 chr3 12766625 12766723 -214757855 + MIR3 SINE MIR 105 208 0 225 0 0 0 chr3 12766966 12766991 -214757587 + (T)n Simple_repeat Simple_repeat 1 25 0 2353 92 0 10 chr3 12768643 12768957 -214755621 + AluSq SINE Alu 1 311 -2 300 53 0 0 chr3 12769459 12769497 -214755081 + (T)n Simple_repeat Simple_repeat 1 38 0 1592 73 0 10 chr3 12769508 12769713 -214754865 - AluSq SINE Alu -110 203 1 366 279 137 37 chr3 12770446 12770500 -214754078 + MIR SINE MIR 54 101 -161 2252 95 10 13 chr3 12770500 12770805 -214753773 + AluSx SINE Alu 1 304 -8 366 279 137 37 chr3 12770805 12770940 -214753638 + MIR SINE MIR 101 262 0 2304 106 0 10 chr3 12771000 12771303 -214753275 + AluSc SINE Alu 1 300 -9 180 176 0 0 chr3 12771314 12771348 -214753230 + GA-rich Low_complexity Low_complexity 3 36 0 2276 91 3 0 chr3 12771514 12771800 -214752778 + AluY SINE Alu 1 287 -24 21 36 0 0 chr3 12771800 12771828 -214752750 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr3 12771856 12771903 -214752675 + AT_rich Low_complexity Low_complexity 1 47 0 23 54 0 0 chr3 12772222 12772259 -214752319 + AT_rich Low_complexity Low_complexity 1 37 0 715 211 8 8 chr3 12772449 12772572 -214752006 + FLAM_A SINE Alu 1 123 -10 22 0 0 0 chr3 12772611 12772633 -214751945 + AT_rich Low_complexity Low_complexity 1 22 0 1489 181 38 14 chr3 12772641 12772934 -214751644 + AluJo SINE Alu 1 300 -12 268 274 32 65 chr3 12773050 12773174 -214751404 + L1ME LINE L1 5572 5691 -430 2383 108 12 0 chr3 12773174 12773498 -214751080 - HSMAR1 DNA Mariner -2 1285 958 372 61 16 55 chr3 12773796 12774042 -214750536 + AluY SINE Alu 1 300 0 25 31 0 0 chr3 12775148 12775180 -214749398 + AT_rich Low_complexity Low_complexity 1 32 0 238 267 322 0 chr3 12775922 12776012 -214748566 + L2 LINE L2 3151 3269 -3 2555 68 0 0 chr3 12776613 12776920 -214747658 + AluY SINE Alu 1 307 -4 941 102 71 0 chr3 12776933 12777060 -214747518 + AluSq/x SINE Alu 1 136 -177 328 307 51 22 chr3 12777100 12777237 -214747341 + MIR SINE MIR 109 249 -13 1770 171 9 19 chr3 12777314 12777629 -214746949 - AluSx SINE Alu 0 312 1 1924 139 0 0 chr3 12778161 12778460 -214746118 + AluSx SINE Alu 9 307 0 2642 55 0 0 chr3 12780314 12780622 -214743956 + AluY SINE Alu 1 308 -3 188 33 0 33 chr3 12780726 12780756 -214743822 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1743 179 7 14 chr3 12781050 12781340 -214743238 + AluJo SINE Alu 1 288 -24 989 169 35 0 chr3 12781360 12781532 -214743046 + AluYb8 SINE Alu 136 313 -5 242 29 29 0 chr3 12783095 12783130 -214741448 + (TG)n Simple_repeat Simple_repeat 2 37 0 202 247 96 41 chr3 12785413 12785486 -214739092 - L2 LINE L2 -8 3264 3188 703 219 124 0 chr3 12785497 12785675 -214738903 - MIR SINE MIR -15 247 48 299 227 61 0 chr3 12786077 12786143 -214738435 + MER20B DNA MER1_type 96 165 -618 280 393 56 0 chr3 12786542 12786631 -214737947 - L2 LINE L2 -37 3235 3142 267 120 53 27 chr3 12786992 12787067 -214737511 + CT-rich Low_complexity Low_complexity 6 82 0 30 0 0 0 chr3 12790756 12790786 -214733792 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr3 12791987 12792009 -214732569 + (T)n Simple_repeat Simple_repeat 1 22 0 1845 127 53 0 chr3 12793070 12793353 -214731225 - MER7A DNA MER2_type -48 298 3 304 306 57 49 chr3 12793381 12793450 -214731128 + HAL1b LINE L1 383 450 -898 2179 106 3 0 chr3 12793450 12793743 -214730835 + AluSg SINE Alu 1 294 -16 304 306 57 49 chr3 12793743 12793918 -214730660 + HAL1b LINE L1 450 629 -719 2193 105 3 10 chr3 12793919 12794225 -214730353 + AluSg1 SINE Alu 1 304 -5 188 33 0 33 chr3 12794330 12794360 -214730218 + (TTTTG)n Simple_repeat Simple_repeat 3 31 0 1743 179 7 14 chr3 12794654 12794944 -214729634 + AluJo SINE Alu 1 288 -24 989 169 35 0 chr3 12794964 12795136 -214729442 + AluYb8 SINE Alu 136 313 -5 242 29 29 0 chr3 12796700 12796735 -214727843 + (TG)n Simple_repeat Simple_repeat 2 37 0 202 247 96 41 chr3 12799018 12799091 -214725487 - L2 LINE L2 -8 3264 3188 703 219 124 0 chr3 12799102 12799280 -214725298 - MIR SINE MIR -15 247 48 299 227 61 0 chr3 12799682 12799748 -214724830 + MER20B DNA MER1_type 96 165 -618 280 393 56 0 chr3 12800147 12800236 -214724342 - L2 LINE L2 -37 3235 3142 267 120 53 27 chr3 12800596 12800671 -214723907 + CT-rich Low_complexity Low_complexity 6 82 0 30 0 0 0 chr3 12804361 12804391 -214720187 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr3 12805593 12805615 -214718963 + (T)n Simple_repeat Simple_repeat 1 22 0 705 291 110 63 chr3 12806303 12806764 -214717814 - L2 LINE L2 -2 3311 2796 1168 153 65 92 chr3 12806764 12806859 -214717719 - MER58A DNA MER1_type -2196 224 128 2184 119 17 0 chr3 12806859 12807161 -214717417 + AluSx SINE Alu 1 307 -5 1168 153 65 92 chr3 12807161 12807294 -214717284 - MER58A DNA MER1_type -2292 128 2 705 291 110 63 chr3 12807294 12807617 -214716961 - L2 LINE L2 -517 2796 2489 2320 92 0 0 chr3 12807742 12808037 -214716541 + AluSg SINE Alu 1 295 -15 269 326 92 0 chr3 12808345 12808443 -214716135 - L2 LINE L2 -9 3263 3157 1044 121 221 11 chr3 12808509 12808699 -214715879 + MER30 DNA MER1_type 1 230 0 1322 146 219 12 chr3 12809215 12809461 -214715117 - AluJo SINE Alu -5 297 1 2293 36 88 0 chr3 12809846 12810120 -214714458 + AluY SINE Alu 1 298 -13 2060 117 3 52 chr3 12810781 12811089 -214713489 + AluSx SINE Alu 1 293 -19 1281 224 116 28 chr3 12811115 12811503 -214713075 + L1MC2 LINE L1 3957 4378 -1768 1046 165 0 0 chr3 12811503 12811661 -214712917 + FRAM SINE Alu 1 157 -19 2221 99 0 0 chr3 12811689 12812024 -214712554 + AluSx SINE Alu 1 335 0 2820 200 101 14 chr3 12812047 12812288 -214712290 + L1MC2 LINE L1 4404 4623 -1721 1918 166 7 0 chr3 12812288 12812584 -214711994 - AluSx SINE Alu -14 298 1 2820 200 101 14 chr3 12812584 12812820 -214711758 + L1MC2 LINE L1 4623 4837 -1507 351 0 0 0 chr3 12812820 12812859 -214711719 + (TG)n Simple_repeat Simple_repeat 2 40 0 2820 200 101 14 chr3 12812859 12813692 -214710886 + L1MC2 LINE L1 4837 5831 -513 1236 240 124 20 chr3 12813694 12814185 -214710393 + L1M1 LINE L1 3100 3641 -3924 718 112 37 67 chr3 12814201 12814335 -214710243 + L1M2 LINE L1 5665 5794 -518 508 91 0 80 chr3 12814335 12814423 -214710155 + L1MA9 LINE L1 5383 5463 -849 2454 154 47 55 chr3 12814513 12814873 -214709705 + L1MA9 LINE L1 5782 6138 -174 1925 149 3 13 chr3 12814873 12815175 -214709403 + AluJb SINE Alu 1 299 -13 2454 154 47 55 chr3 12815175 12815346 -214709232 + L1MA9 LINE L1 6138 6309 -3 3182 111 21 38 chr3 12815354 12815848 -214708730 + L1MC1 LINE L1 5818 6304 -29 2141 102 10 33 chr3 12815848 12816151 -214708427 + AluSx SINE Alu 5 300 -12 3182 111 21 38 chr3 12816151 12816178 -214708400 + L1MC1 LINE L1 6304 6330 -3 587 137 23 122 chr3 12816178 12816259 -214708319 + AluJo/FLAM SINE Alu 1 66 -236 2266 85 0 13 chr3 12816259 12816564 -214708014 - AluY SINE Alu -10 301 1 587 137 23 122 chr3 12816564 12816613 -214707965 + AluJo/FLAM SINE Alu 66 118 -184 24 0 0 0 chr3 12816613 12816637 -214707941 + AT_rich Low_complexity Low_complexity 1 24 0 629 318 92 25 chr3 12816639 12816774 -214707804 + HAL1b LINE L1 64 188 -1160 1634 166 17 10 chr3 12816774 12817069 -214707509 + AluSx SINE Alu 1 297 -15 629 318 92 25 chr3 12817069 12817216 -214707362 + HAL1b LINE L1 188 365 -983 1923 153 48 0 chr3 12817251 12817564 -214707014 - MER7A DNA MER2_type -18 328 3 274 306 57 49 chr3 12817592 12817661 -214706917 + HAL1b LINE L1 383 450 -898 2071 106 3 0 chr3 12817661 12817954 -214706624 + AluSg SINE Alu 1 294 -16 274 306 57 49 chr3 12817954 12818129 -214706449 + HAL1b LINE L1 450 629 -719 2241 92 3 0 chr3 12818130 12818436 -214706142 + AluSg1 SINE Alu 1 307 -2 1776 223 32 73 chr3 12818852 12819508 -214705070 + L1MC5 LINE L1 6732 7360 -601 1023 256 61 59 chr3 12819645 12820168 -214704410 + L1MC5 LINE L1 6962 7485 -476 475 135 292 0 chr3 12820212 12820308 -214704270 + FLAM_A SINE Alu 6 129 -13 1798 153 7 0 chr3 12820311 12820612 -214703966 + AluSx SINE Alu 1 303 -9 260 256 81 23 chr3 12820931 12821017 -214703561 + L2 LINE L2 3223 3313 0 191 336 130 40 chr3 12821363 12821572 -214703006 + L2 LINE L2 332 573 -2741 2086 116 17 0 chr3 12821572 12821874 -214702704 - AluSx SINE Alu -5 307 1 191 336 130 40 chr3 12821874 12821941 -214702637 + L2 LINE L2 573 633 -2681 839 327 151 42 chr3 12822332 12822384 -214702194 + L2 LINE L2 1301 1346 -1926 2173 88 13 28 chr3 12822384 12822701 -214701877 - AluSx SINE Alu 0 312 1 839 327 151 42 chr3 12822701 12823856 -214700722 + L2 LINE L2 1346 2374 -898 2355 147 18 61 chr3 12823856 12824241 -214700337 + MSTB LTR MaLR 1 401 -25 1783 142 17 26 chr3 12824241 12824378 -214700200 + AluJo SINE Alu 1 138 -174 2238 93 0 0 chr3 12824378 12824668 -214699910 + AluSc SINE Alu 1 290 -19 1783 142 17 26 chr3 12824668 12824832 -214699746 + AluJo SINE Alu 138 299 -13 2118 122 0 0 chr3 12824839 12825142 -214699436 + AluSx SINE Alu 1 303 -9 2355 147 18 61 chr3 12825142 12825191 -214699387 + MSTB LTR MaLR 407 424 -2 839 327 151 42 chr3 12825191 12825741 -214698837 + L2 LINE L2 2374 3266 -6 238 325 61 18 chr3 12825777 12825940 -214698638 - MIR SINE MIR -16 246 77 620 195 81 109 chr3 12826010 12826069 -214698509 + MLT1J LTR MaLR 5 64 -447 2203 104 0 0 chr3 12826069 12826368 -214698210 - AluSx SINE Alu -13 299 1 620 195 81 109 chr3 12826368 12826745 -214697833 + MLT1J LTR MaLR 64 500 -11 203 333 0 53 chr3 12828272 12828422 -214696156 + C-rich Low_complexity Low_complexity 3 144 0 225 297 0 25 chr3 12828448 12828566 -214696012 + CT-rich Low_complexity Low_complexity 2 116 0 206 292 0 66 chr3 12828524 12828661 -214695917 + C-rich Low_complexity Low_complexity 2 129 0 * 350 113 0 42 chr3 12829383 12829454 -214695124 + (CA)n Simple_repeat Simple_repeat 2 69 0 237 65 0 0 chr3 12830757 12830788 -214693790 + (GA)n Simple_repeat Simple_repeat 2 32 0 2159 107 0 3 chr3 12830862 12831160 -214693418 + AluSq SINE Alu 1 297 -16 551 265 55 45 chr3 12831179 12831379 -214693199 + MIR SINE MIR 40 241 -21 664 155 43 17 chr3 12831449 12831565 -214693013 - FLAM_A SINE Alu -12 130 12 329 261 109 0 chr3 12831994 12832086 -214692492 + MIR SINE MIR 11 112 -150 1999 116 0 0 chr3 12832187 12832462 -214692116 + AluJo SINE Alu 2 276 -36 1892 137 0 23 chr3 12832531 12832838 -214691740 + AluSx SINE Alu 1 300 -12 2347 71 0 0 chr3 12832986 12833281 -214691297 + AluY SINE Alu 1 295 -16 387 297 139 46 chr3 12833314 12833681 -214690897 - L1ME3 LINE L1 -205 5957 5557 1904 136 3 37 chr3 12833699 12833886 -214690692 - AluJb SINE Alu 0 312 139 1966 64 114 4 chr3 12833886 12834166 -214690412 - AluY SINE Alu 0 311 1 1904 136 3 37 chr3 12834166 12834301 -214690277 - AluJb SINE Alu -173 139 1 210 292 0 0 chr3 12834783 12834831 -214689747 + polypurine Low_complexity Low_complexity 4 51 0 2045 116 3 0 chr3 12835029 12835322 -214689256 - AluSx SINE Alu -18 294 1 513 271 114 33 chr3 12835434 12835644 -214688934 + MIR SINE MIR 17 243 -19 233 336 115 9 chr3 12835627 12835718 -214688860 - L2 LINE L2 -7 3265 3163 735 229 91 13 chr3 12835718 12835963 -214688615 + MIR SINE MIR 1 261 -1 242 305 12 0 chr3 12836850 12836932 -214687646 - L2 LINE L2 -339 2974 2892 329 292 152 6 chr3 12836940 12837118 -214687460 - L2 LINE L2 -1035 2279 2076 297 306 10 0 chr3 12837605 12837703 -214686875 + CT-rich Low_complexity Low_complexity 2 100 0 210 360 0 0 chr3 12837797 12837872 -214686706 + CT-rich Low_complexity Low_complexity 2 76 0 282 278 139 50 chr3 12837874 12838054 -214686524 - L2 LINE L2 -1 3312 3117 180 229 83 21 chr3 12838309 12838357 -214686221 - MIR SINE MIR -95 167 117 605 253 104 20 chr3 12838453 12838614 -214685964 - MER20 DNA MER1_type 0 219 36 1537 174 53 7 chr3 12838614 12838895 -214685683 + AluJb SINE Alu 5 298 -4 605 253 104 20 chr3 12838895 12838935 -214685643 - MER20 DNA MER1_type -183 36 1 2162 95 0 0 chr3 12839098 12839424 -214685154 + AluSx SINE Alu 1 326 0 642 261 19 66 chr3 12839431 12839512 -214685066 - MIR SINE MIR -19 243 160 2202 95 0 0 chr3 12839512 12839807 -214684771 + AluY SINE Alu 1 295 -16 642 261 19 66 chr3 12839807 12839936 -214684642 - MIR SINE MIR -102 160 43 1392 203 44 3 chr3 12839939 12840260 -214684318 + MER113 DNA MER1_type? 79 412 -109 2262 64 7 0 chr3 12840377 12840672 -214683906 - AluY SINE Alu -14 297 1 382 283 9 53 chr3 12840678 12840791 -214683787 + MIR SINE MIR 85 192 -70 1001 251 55 98 chr3 12840962 12841384 -214683194 + MLT1J LTR MaLR 3 406 -105 2271 49 0 7 chr3 12841384 12841702 -214682876 - AluY SINE Alu 0 316 1 1001 251 55 98 chr3 12841702 12841736 -214682842 + MLT1J LTR MaLR 406 440 -71 210 71 0 0 chr3 12841742 12841770 -214682808 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1513 169 18 15 chr3 12841800 12842073 -214682505 - AluJo SINE Alu -38 274 1 294 172 0 17 chr3 12842081 12842139 -214682439 + MLT1J LTR MaLR 450 506 -5 182 200 0 0 chr3 12842198 12842233 -214682345 + MIR SINE MIR 79 113 -95 667 134 84 25 chr3 12842608 12842727 -214681851 + AluJo SINE Alu 9 134 -178 6539 168 30 33 chr3 12842774 12843813 -214680765 - L1MC1 LINE L1 0 6613 5572 1978 137 7 0 chr3 12843813 12844112 -214680466 - AluSx SINE Alu -11 301 1 6539 168 30 33 chr3 12844112 12844161 -214680417 - L1MC1 LINE L1 -1041 5572 5524 1919 133 20 0 chr3 12844161 12844455 -214680123 - AluSx SINE Alu -12 300 1 6539 168 30 33 chr3 12844455 12844913 -214679665 - L1MC1 LINE L1 -1089 5524 5066 2166 106 0 10 chr3 12844913 12845214 -214679364 - AluSx SINE Alu -14 298 1 1957 110 23 7 chr3 12845222 12845521 -214679057 - AluSq SINE Alu -9 304 1 6539 168 30 33 chr3 12845521 12845943 -214678635 - L1MC1 LINE L1 -1554 5059 4638 941 168 84 5 chr3 12845945 12846147 -214678431 + AluJo SINE Alu 85 302 -10 4280 231 32 19 chr3 12846152 12847188 -214677390 - L1MC1 LINE L1 -1793 4633 3612 1901 115 39 39 chr3 12847188 12847362 -214677216 - AluSx SINE Alu 0 312 139 267 31 0 0 chr3 12847362 12847394 -214677184 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1945 112 0 7 chr3 12847394 12847679 -214676899 - AluSq SINE Alu -30 283 1 1901 115 39 39 chr3 12847679 12847815 -214676763 - AluSx SINE Alu -171 141 1 4280 231 32 19 chr3 12847815 12847998 -214676580 - L1MC1 LINE L1 -2814 3612 3398 1254 196 32 4 chr3 12848000 12848250 -214676328 - AluJo SINE Alu -12 300 44 876 123 15 8 chr3 12848259 12848389 -214676189 - AluJb SINE Alu -171 141 11 915 202 0 0 chr3 12848396 12848614 -214675964 - L1MC1 LINE L1 -3006 3420 3203 554 225 0 39 chr3 12848618 12848747 -214675831 + FLAM_C SINE Alu 7 130 -13 180 0 0 0 chr3 12848782 12848802 -214675776 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1855 128 29 4 chr3 12848804 12849085 -214675493 - AluSg SINE Alu -22 288 1 1875 249 58 3 chr3 12849090 12849657 -214674921 - L1MC1 LINE L1 -3234 3192 2595 994 162 23 0 chr3 12849659 12849832 -214674746 - AluJo/FRAM SINE Alu -2 310 134 2145 103 3 10 chr3 12849832 12850143 -214674435 - AluY SINE Alu -2 309 1 1617 150 80 12 chr3 12850143 12850585 -214673993 - L1MC1 LINE L1 -3947 2479 2140 356 200 16 49 chr3 12850650 12850835 -214673743 + C-rich Low_complexity Low_complexity 2 180 0 388 257 9 18 chr3 12850835 12850948 -214673630 + CT-rich Low_complexity Low_complexity 1 112 0 457 134 0 0 chr3 12851052 12851119 -214673459 - AluS SINE Alu -212 101 35 9064 135 39 42 chr3 12851121 12851583 -214672995 - L1MC1 LINE L1 -4493 1933 1471 192 97 0 0 chr3 12851583 12851614 -214672964 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 9064 135 39 42 chr3 12851614 12852999 -214671579 - L1MC1 LINE L1 -4955 1471 1 247 222 0 0 chr3 12853170 12853215 -214671363 - MIR SINE MIR -31 231 187 2430 140 5 10 chr3 12853391 12853797 -214670781 + L1MB3 LINE L1 5779 6182 -1 1288 205 129 37 chr3 12853939 12854319 -214670259 + MLT1C LTR MaLR 1 415 -52 257 87 29 58 chr3 12854379 12854448 -214670130 + (GGAA)n Simple_repeat Simple_repeat 3 69 0 812 165 0 8 chr3 12854669 12854802 -214669776 + AluJb SINE Alu 3 134 -178 1415 189 35 3 chr3 12854818 12855103 -214669475 + AluJb SINE Alu 5 298 -14 372 22 0 0 chr3 12855186 12855231 -214669347 + (CA)n Simple_repeat Simple_repeat 2 46 0 14249 102 44 85 chr3 12855232 12856008 -214668570 - Tigger1 DNA MER2_type -1 2417 1610 2131 104 3 0 chr3 12856008 12856295 -214668283 - AluSx SINE Alu -24 288 1 722 112 0 0 chr3 12856302 12856400 -214668178 - AluSg/x SINE Alu -16 294 197 14249 102 44 85 chr3 12856400 12856413 -214668165 - Tigger1 DNA MER2_type -814 1604 1592 2289 88 0 0 chr3 12856413 12856707 -214667871 - AluSg SINE Alu -16 294 1 14249 102 44 85 chr3 12856707 12857006 -214667572 - Tigger1 DNA MER2_type -826 1592 1282 2058 121 3 0 chr3 12857006 12857311 -214667267 - AluSg1 SINE Alu -3 306 1 14249 102 44 85 chr3 12857311 12858146 -214666432 - Tigger1 DNA MER2_type -1136 1282 509 840 150 0 15 chr3 12858146 12858279 -214666299 - FLAM_C SINE Alu -2 131 1 14249 102 44 85 chr3 12858279 12858768 -214665810 - Tigger1 DNA MER2_type -1909 509 1 200 182 0 0 chr3 12858848 12858881 -214665697 + GA-rich Low_complexity Low_complexity 3 35 0 1521 138 20 30 chr3 12858902 12859207 -214665371 + AluSx SINE Alu 1 302 -10 2218 169 51 5 chr3 12859639 12860048 -214664530 - MSTA LTR MaLR 0 428 1 1058 232 0 36 chr3 12860144 12860394 -214664184 + L1M3e LINE L1 1 241 -6789 705 327 9 0 chr3 13060788 13060999 -214463579 - MIR SINE MIR -12 250 38 312 229 46 76 chr3 13061029 13061160 -214463418 + MIR SINE MIR 64 190 -72 335 329 79 6 chr3 13062150 13062314 -214462264 + MIR SINE MIR 87 262 0 2216 73 19 32 chr3 13062746 13063060 -214461518 - AluSg SINE Alu 0 310 1 1021 204 0 4 chr3 13064195 13064426 -214460152 - AluY SINE Alu -81 230 1 1197 178 82 10 chr3 13064426 13064729 -214459849 - L1MB8 LINE L1 -211 5967 5643 228 182 0 0 chr3 13064733 13064777 -214459801 + (TA)n Simple_repeat Simple_repeat 1 44 0 623 200 0 23 chr3 13064788 13064918 -214459660 - FLAM_A SINE Alu 0 142 16 205 71 24 48 chr3 13065056 13065098 -214459480 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 2347 101 0 3 chr3 13065155 13065461 -214459117 - AluSg SINE Alu -3 307 3 2397 105 0 0 chr3 13065463 13065767 -214458811 - AluSx SINE Alu -6 306 3 790 155 0 0 chr3 13065798 13065927 -214458651 - FLAM_C SINE Alu 0 133 5 419 277 55 21 chr3 13065927 13066110 -214458468 - MIR SINE MIR -55 207 16 275 82 0 7 chr3 13066450 13066497 -214458081 - AluYa8 SINE Alu -106 194 156 774 210 0 89 chr3 13066997 13067087 -214457491 - MER3 DNA MER1_type -8 201 105 2064 87 23 65 chr3 13067087 13067396 -214457182 + AluSq SINE Alu 2 297 -16 774 210 0 89 chr3 13067396 13067519 -214457059 - MER3 DNA MER1_type -104 105 7 458 223 192 8 chr3 13068182 13068312 -214456266 - MER5A DNA MER1_type -6 183 30 450 326 67 5 chr3 13068347 13068540 -214456038 - MIR SINE MIR -38 224 20 421 259 184 14 chr3 13068708 13068855 -214455723 + MER5A DNA MER1_type 18 189 0 1926 137 16 19 chr3 13068866 13069179 -214455399 - AluSx SINE Alu 0 312 1 2199 115 3 7 chr3 13069773 13070068 -214454510 - AluSx SINE Alu -18 294 1 2022 146 0 0 chr3 13070070 13070351 -214454227 - AluSx SINE Alu -31 281 1 1342 211 73 35 chr3 13070760 13071129 -214453449 - L1MC4 LINE L1 -144 7898 7516 2475 80 0 6 chr3 13071138 13071449 -214453129 - AluY SINE Alu -2 309 1 542 303 118 26 chr3 13071468 13071815 -214452763 + L1MC/D LINE L1 5445 5823 -1985 2425 98 0 13 chr3 13071815 13072122 -214452456 + AluSx SINE Alu 1 303 -9 2517 59 0 0 chr3 13072123 13072412 -214452166 + AluY SINE Alu 2 290 -21 611 137 0 0 chr3 13073389 13073484 -214451094 + AluJo/FLAM SINE Alu 35 129 -183 2356 68 0 0 chr3 13073486 13073804 -214450774 + AluY SINE Alu 1 318 0 2387 76 14 0 chr3 13073856 13074147 -214450431 + AluY SINE Alu 1 295 -16 2471 83 3 10 chr3 13074327 13074639 -214449939 - AluSg SINE Alu 0 310 1 633 283 62 52 chr3 13075237 13075357 -214449221 - MER113 DNA MER1_type? -5 516 399 2557 93 0 0 chr3 13075357 13075669 -214448909 - AluSx SINE Alu 0 312 1 633 283 62 52 chr3 13075669 13075873 -214448705 - MER113 DNA MER1_type? -122 399 189 2142 130 0 0 chr3 13075873 13076165 -214448413 + AluSq SINE Alu 1 292 -21 463 304 120 14 chr3 13076579 13076796 -214447782 + MIR SINE MIR 20 259 -3 1023 137 137 19 chr3 13076806 13076855 -214447723 + MER46A DNA MER2_type 1 43 -2688 2190 138 0 0 chr3 13076855 13077152 -214447426 + AluSx SINE Alu 1 297 -15 1023 137 137 19 chr3 13077152 13077313 -214447265 + MER46A DNA MER2_type 43 236 0 25 0 0 0 chr3 13077609 13077634 -214446944 + AT_rich Low_complexity Low_complexity 1 25 0 2312 93 0 0 chr3 13077689 13078004 -214446574 - AluSc SINE Alu 0 315 1 1677 159 35 14 chr3 13078006 13078296 -214446282 - AluJb SINE Alu -16 296 1 186 43 0 0 chr3 13078459 13078482 -214446096 + (A)n Simple_repeat Simple_repeat 1 23 0 349 164 33 0 chr3 13079111 13079172 -214445406 + MER20 DNA MER1_type 3 65 -154 448 213 176 15 chr3 13079215 13079351 -214445227 + MER20 DNA MER1_type 57 214 -5 218 307 139 0 chr3 13079391 13079492 -214445086 - L2 LINE L2 0 3272 3158 2473 79 0 3 chr3 13079635 13079939 -214444639 - AluY SINE Alu -8 303 1 2188 110 0 3 chr3 13080195 13080487 -214444091 - AluSx SINE Alu -21 291 1 2194 141 0 0 chr3 13080487 13080785 -214443793 - AluSx SINE Alu -14 298 1 293 275 42 49 chr3 13080796 13080938 -214443640 + L2 LINE L2 3171 3311 -2 220 376 24 0 chr3 13081042 13081167 -214443411 - L2 LINE L2 -470 2844 2717 2162 99 25 3 chr3 13081312 13081596 -214442982 + AluSx SINE Alu 14 303 -9 1318 213 56 39 chr3 13081604 13081905 -214442673 + L1ME1 LINE L1 5767 6061 -105 1035 182 0 0 chr3 13081905 13082075 -214442503 - FAM SINE Alu -5 170 1 1318 213 56 39 chr3 13082075 13082090 -214442488 + L1ME1 LINE L1 6061 6074 -92 2435 76 0 0 chr3 13082090 13082381 -214442197 - AluY SINE Alu -20 291 1 1318 213 56 39 chr3 13082381 13082420 -214442158 + L1ME1 LINE L1 6074 6129 -37 215 261 57 11 chr3 13082699 13082787 -214441791 - L2 LINE L2 -1077 2237 2146 464 194 20 0 chr3 13084317 13084415 -214440163 - MIR SINE MIR -32 230 131 574 293 0 7 chr3 13084444 13084591 -214439987 - MIR SINE MIR -106 156 11 393 312 130 9 chr3 13084752 13084967 -214439611 + MIR SINE MIR 2 242 -20 660 267 21 69 chr3 13085709 13085949 -214438629 + MIR SINE MIR 30 259 -3 247 336 80 8 chr3 13085964 13086089 -214438489 - L2 LINE L2 -1 3312 3179 214 246 46 31 chr3 13086472 13086537 -214438041 - L2 LINE L2 -250 3022 2957 2211 121 3 3 chr3 13087463 13087769 -214436809 + AluSx SINE Alu 1 306 -6 2024 132 0 7 chr3 13087774 13088055 -214436523 + AluSx SINE Alu 16 294 -18 2578 63 0 0 chr3 13088055 13088357 -214436221 + AluY SINE Alu 1 303 -8 217 299 19 58 chr3 13088662 13088816 -214435762 + L2 LINE L2 2944 3091 -181 424 257 118 0 chr3 13089774 13089918 -214434660 - L1ME3A LINE L1 -32 6138 5978 241 299 259 6 chr3 13089929 13090103 -214434475 - MIR SINE MIR -26 236 19 187 274 53 80 chr3 13090059 13090172 -214434406 + MIR SINE MIR 27 136 -72 * 540 284 83 61 chr3 13090235 13090360 -214434218 - MLT1J1 LTR MaLR -112 334 213 2531 71 0 10 chr3 13090360 13090669 -214433909 + AluY SINE Alu 1 306 -5 540 284 83 61 chr3 13090669 13090870 -214433708 - MLT1J1 LTR MaLR -233 213 1 191 286 0 0 chr3 13090874 13090923 -214433655 + L2 LINE L2 3213 3261 -11 258 303 53 75 chr3 13091453 13091704 -214432874 + L1ME4a LINE L1 5687 5931 -190 2352 109 3 0 chr3 13091704 13092016 -214432562 - AluSq SINE Alu 0 313 1 258 303 53 75 chr3 13092016 13092084 -214432494 + L1ME4a LINE L1 5931 5999 -122 24 32 0 0 chr3 13092108 13092139 -214432439 + AT_rich Low_complexity Low_complexity 1 31 0 230 267 50 75 chr3 13092658 13092778 -214431800 + MER5B DNA MER1_type 7 123 -55 2561 65 0 3 chr3 13092797 13093103 -214431475 - AluY SINE Alu -6 305 1 973 102 0 0 chr3 13093154 13093282 -214431296 + AluSp/q SINE Alu 176 303 -10 344 182 23 11 chr3 13093282 13093370 -214431208 - L1MB2 LINE L1 -36 6135 6047 247 280 10 0 chr3 13093395 13093495 -214431083 - L1MC4 LINE L1 -1 8041 7941 1300 102 0 0 chr3 13093792 13093958 -214430620 - AluSg/x SINE Alu -14 298 133 510 320 93 0 chr3 13094113 13094307 -214430271 - MIR SINE MIR 0 262 51 1938 147 19 10 chr3 13094461 13094768 -214429810 + AluJo SINE Alu 1 310 -2 234 347 75 0 chr3 13094800 13094947 -214429631 + MIR3 SINE MIR 40 197 -11 422 250 191 0 chr3 13095094 13095246 -214429332 + MIR SINE MIR 11 191 -71 219 125 0 0 chr3 13095262 13095302 -214429276 + (TG)n Simple_repeat Simple_repeat 2 41 0 700 175 8 0 chr3 13095315 13095435 -214429143 - FLAM_C SINE Alu -12 121 1 1742 168 35 3 chr3 13095457 13095742 -214428836 - AluJo SINE Alu -18 294 1 711 123 9 9 chr3 13095743 13095857 -214428721 - L1MC1 LINE L1 -9 6324 6211 364 309 80 55 chr3 13096781 13096934 -214427644 - MLT1L LTR MaLR -10 605 457 1162 33 26 0 chr3 13096934 13097086 -214427492 - L1PA5 LINE L1 0 6154 5999 364 309 80 55 chr3 13097086 13097362 -214427216 - MLT1L LTR MaLR -158 457 176 878 294 104 30 chr3 13097787 13098192 -214426386 + MLT1K LTR MaLR 144 578 -10 497 201 148 58 chr3 13098420 13098609 -214425969 - MIR SINE MIR -26 236 31 407 235 41 0 chr3 13098623 13098721 -214425857 + MER91C DNA MER1_type 39 140 0 252 369 76 0 chr3 13098991 13099148 -214425430 - MIR SINE MIR -14 248 80 2727 48 0 0 chr3 13099910 13100221 -214424357 + AluY SINE Alu 1 311 0 301 285 180 48 chr3 13100239 13100545 -214424033 - L2 LINE L2 -159 3113 2763 716 181 30 91 chr3 13100545 13100659 -214423919 + MER5A DNA MER1_type 1 99 -90 2336 95 7 0 chr3 13100659 13100954 -214423624 + AluSx SINE Alu 1 297 -15 716 181 30 91 chr3 13100954 13101038 -214423540 + MER5A DNA MER1_type 99 187 -2 301 285 180 48 chr3 13101038 13101079 -214423499 - L2 LINE L2 -509 2763 2729 2040 108 38 14 chr3 13101330 13101618 -214422960 - AluSx SINE Alu -4 308 14 578 314 33 17 chr3 13101646 13101934 -214422644 - L1ME LINE L1 -422 5699 5395 300 256 174 12 chr3 13101961 13102133 -214422445 - L1ME LINE L1 -801 5345 5146 2297 114 3 0 chr3 13102165 13102471 -214422107 - AluSx SINE Alu -5 307 1 1553 166 3 48 chr3 13102605 13102918 -214421660 + AluJb SINE Alu 13 312 0 2318 79 0 52 chr3 13103023 13103351 -214421227 - AluY SINE Alu 0 311 1 1943 131 0 0 chr3 13103353 13103612 -214420966 - AluSx SINE Alu -13 299 41 304 192 26 13 chr3 13103685 13103763 -214420815 + L1ME4a LINE L1 5946 6024 -97 238 228 38 25 chr3 13104212 13104291 -214420287 + MLT1K LTR MaLR 497 576 -12 2427 90 7 3 chr3 13104481 13104791 -214419787 + AluSx SINE Alu 1 311 -1 310 313 90 0 chr3 13105068 13105202 -214419376 - MIR SINE MIR -31 231 86 2126 139 13 3 chr3 13105274 13105624 -214418954 + AluJo SINE Alu 1 353 0 245 299 93 0 chr3 13106341 13106448 -214418130 + MIR SINE MIR 27 143 -119 227 250 0 0 chr3 13107638 13107702 -214416876 + (TG)n Simple_repeat Simple_repeat 2 65 0 180 77 0 0 chr3 13108878 13108904 -214415674 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 224 220 44 11 chr3 13108967 13109058 -214415520 + (TGAA)n Simple_repeat Simple_repeat 1 94 0 547 279 118 60 chr3 13109548 13110128 -214414450 - L2 LINE L2 -45 3227 2612 300 289 240 0 chr3 13110306 13110410 -214414168 - MER5A DNA MER1_type 0 189 61 252 247 68 14 chr3 13110423 13110496 -214414082 - MER5A DNA MER1_type -82 107 31 1310 217 173 8 chr3 13110528 13110892 -214413686 - MLT1K LTR MaLR -43 545 122 325 299 31 0 chr3 13111221 13111318 -214413260 + MIR SINE MIR 89 188 -74 2191 80 28 0 chr3 13111666 13111952 -214412626 - AluSx SINE Alu -14 298 5 269 261 15 0 chr3 13111975 13112040 -214412538 - MIR SINE MIR -85 123 58 1617 78 4 26 chr3 13112064 13112295 -214412283 + AluSp SINE Alu 88 313 0 2040 108 3 54 chr3 13112297 13112613 -214411965 + AluSp SINE Alu 2 301 -12 736 221 7 0 chr3 13112632 13112777 -214411801 - MIR SINE MIR -12 250 105 328 259 46 56 chr3 13112797 13112905 -214411673 - L2 LINE L2 -49 3223 3117 2111 120 0 0 chr3 13112913 13113204 -214411374 - AluSq SINE Alu -22 291 1 1021 152 11 43 chr3 13113485 13113669 -214410909 - FAM SINE Alu -7 42 1 228 266 16 0 chr3 13114055 13114119 -214410459 + MIR SINE MIR 79 143 -119 259 248 25 93 chr3 13114214 13114243 -214410335 - L1ME4a LINE L1 -1 6120 6091 1819 115 38 54 chr3 13114243 13114557 -214410021 + AluSq SINE Alu 1 309 -4 259 248 25 93 chr3 13114557 13114688 -214409890 - L1ME4a LINE L1 -30 6091 5971 189 438 0 0 chr3 13115450 13115530 -214409048 - L2 LINE L2 -82 3190 3111 234 303 73 18 chr3 13115604 13115670 -214408908 - L2 LINE L2 -212 3060 2984 2365 71 0 0 chr3 13115670 13115967 -214408611 + AluY SINE Alu 1 297 -14 234 303 73 18 chr3 13115967 13115981 -214408597 - L2 LINE L2 -288 2984 2974 203 184 0 161 chr3 13115981 13116068 -214408510 + MIR3 SINE MIR 3 75 -133 2106 111 0 19 chr3 13116144 13116460 -214408118 + AluSx SINE Alu 1 310 -2 2165 114 0 7 chr3 13116460 13116768 -214407810 + AluSx SINE Alu 1 306 -6 1061 130 0 30 chr3 13116768 13116937 -214407641 + AluSg/x SINE Alu 132 295 -15 737 287 50 0 chr3 13116961 13117025 -214407553 + MIR SINE MIR 17 76 -186 330 179 0 119 chr3 13117025 13117052 -214407526 - MER116 DNA Mariner -4 76 47 2117 93 0 13 chr3 13117052 13117352 -214407226 + AluSx SINE Alu 1 296 -16 330 179 0 119 chr3 13117352 13117408 -214407170 - MER116 DNA Mariner -33 47 3 737 287 50 0 chr3 13117408 13117545 -214407033 + MIR SINE MIR 76 228 -34 220 303 30 15 chr3 13117990 13118056 -214406522 + MER91A DNA MER1_type 130 196 0 412 215 42 40 chr3 13118577 13118616 -214405962 + MIR SINE MIR 42 79 -171 1790 123 76 4 chr3 13118616 13118893 -214405685 - AluSx SINE Alu -15 297 1 412 215 42 40 chr3 13118893 13119001 -214405577 + MIR SINE MIR 79 187 -63 863 136 0 50 chr3 13119069 13119209 -214405369 - FLAM_C SINE Alu 0 133 1 2336 75 0 0 chr3 13119239 13119534 -214405044 + AluY SINE Alu 1 295 -16 2415 61 0 0 chr3 13120468 13120764 -214403814 - AluY SINE Alu -15 296 1 317 340 10 0 chr3 13121036 13121136 -214403442 + (CCCA)n Simple_repeat Simple_repeat 2 102 0 311 250 9 0 chr3 13121149 13121265 -214403313 + (TCCA)n Simple_repeat Simple_repeat 2 118 0 330 349 15 0 chr3 13121326 13121458 -214403120 + (TCCA)n Simple_repeat Simple_repeat 2 135 0 182 250 0 0 chr3 13123023 13123063 -214401515 + MIR SINE MIR 4 43 -219 245 264 0 0 chr3 13123459 13123512 -214401066 - L2 LINE L2 -11 3261 3209 2362 89 0 0 chr3 13123817 13124119 -214400459 + AluSx SINE Alu 1 302 -10 2334 76 0 10 chr3 13124159 13124463 -214400115 - AluSg SINE Alu -9 301 1 1120 166 0 0 chr3 13124621 13124796 -214399782 - AluSg/x SINE Alu -13 299 125 297 115 69 0 chr3 13124797 13124884 -214399694 + (TA)n Simple_repeat Simple_repeat 1 93 0 321 306 113 0 chr3 13125187 13125347 -214399231 + MIR SINE MIR 78 255 -7 744 200 0 0 chr3 13125557 13125722 -214398856 + CT-rich Low_complexity Low_complexity 4 168 0 2424 60 0 0 chr3 13125912 13126211 -214398367 + AluY SINE Alu 1 299 -12 1282 195 161 4 chr3 13126220 13126481 -214398097 + AluJo SINE Alu 1 302 0 2024 139 7 0 chr3 13126738 13127039 -214397539 + AluSx SINE Alu 3 305 -7 2102 117 3 10 chr3 13127039 13127346 -214397232 + AluSx SINE Alu 1 306 -6 233 240 58 58 chr3 13127396 13127500 -214397078 + MIR SINE MIR 86 189 -73 2149 111 7 0 chr3 13127812 13128119 -214396459 + AluSg SINE Alu 1 309 -1 235 283 58 50 chr3 13129628 13129748 -214394830 + MIR SINE MIR 7 127 -135 318 305 21 0 chr3 13129987 13130082 -214394496 - MIR SINE MIR -118 144 48 2084 105 0 7 chr3 13130617 13130913 -214393665 + AluSq SINE Alu 1 294 -19 1996 151 0 3 chr3 13130926 13131237 -214393341 + AluJo SINE Alu 1 310 -2 1829 180 7 0 chr3 13131288 13131594 -214392984 + AluJb SINE Alu 1 308 -4 258 116 0 0 chr3 13131595 13131638 -214392940 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 2168 101 0 0 chr3 13131658 13131955 -214392623 + AluY SINE Alu 6 302 -9 2182 90 3 3 chr3 13132095 13132395 -214392183 + AluSp SINE Alu 14 313 0 221 319 111 63 chr3 13132636 13132794 -214391784 - MIR SINE MIR -70 192 29 291 200 17 0 chr3 13133271 13133331 -214391247 - MIR SINE MIR -60 148 88 735 191 0 0 chr3 13133375 13133490 -214391088 + FLAM_C SINE Alu 6 120 -23 207 88 0 0 chr3 13133490 13133524 -214391054 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 262 272 88 68 chr3 13133978 13134125 -214390453 + MIR SINE MIR 99 248 -14 225 94 0 0 chr3 13135457 13135489 -214389089 + (CA)n Simple_repeat Simple_repeat 2 33 0 246 301 125 7 chr3 13135719 13135855 -214388723 + MIR SINE MIR 108 259 -3 259 302 19 19 chr3 13135996 13136102 -214388476 - L2 LINE L2 -220 3052 2947 2154 127 0 3 chr3 13136198 13136505 -214388073 + AluSx SINE Alu 1 306 -6 1928 124 29 33 chr3 13136518 13136825 -214387753 + AluSg SINE Alu 1 306 -4 776 42 0 0 chr3 13137905 13138000 -214386578 - AluY SINE Alu -1 310 216 2048 142 20 41 chr3 13138092 13138436 -214386142 + MER1B DNA MER1_type 1 337 0 742 199 88 0 chr3 13138856 13138992 -214385586 + FRAM SINE Alu 8 155 -21 251 317 14 115 chr3 13139154 13139237 -214385341 - MIR SINE MIR -56 206 116 2118 114 3 7 chr3 13139237 13139578 -214385000 + AluSx SINE Alu 1 312 0 251 317 14 115 chr3 13139578 13139702 -214384876 - MIR SINE MIR -146 116 20 825 285 76 3 chr3 13140212 13140500 -214384078 + MER102b DNA MER1_type 33 341 0 415 277 103 0 chr3 13141065 13141220 -214383358 + MER91A DNA MER1_type 20 190 -6 9645 53 14 3 chr3 13141957 13143196 -214381382 + SVA Other Other 135 1386 0 356 271 75 28 chr3 13143223 13143330 -214381248 - L1ME4a LINE L1 -272 5849 5738 423 0 0 0 chr3 13143340 13143387 -214381191 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1304 148 92 8 chr3 13143392 13143642 -214380936 - AluJo SINE Alu -32 280 10 2313 74 0 3 chr3 13143651 13143950 -214380628 - AluY SINE Alu -13 298 1 327 274 47 9 chr3 13144274 13144380 -214380198 - MIR SINE MIR -55 153 44 265 248 106 44 chr3 13144626 13144739 -214379839 - MIR3 SINE MIR -35 173 54 458 212 145 45 chr3 13145080 13145259 -214379319 + MIR SINE MIR 9 205 -57 3245 171 72 14 chr3 13145260 13145951 -214378627 + L1MB5 LINE L1 5435 6165 -9 337 237 0 41 chr3 13145955 13146066 -214378512 - L1MC4 LINE L1 -1339 6983 1996 224 218 55 0 chr3 13146085 13146140 -214378438 + L2 LINE L2 3186 3243 -29 302 279 19 19 chr3 13146172 13146276 -214378302 - MIR3 SINE MIR -22 186 83 365 196 0 72 chr3 13146305 13146402 -214378176 - MIR SINE MIR -70 192 103 1576 271 175 17 chr3 13146580 13147485 -214377093 + L2 LINE L2 2196 3245 -68 453 307 39 20 chr3 13147732 13147885 -214376693 - MIR SINE MIR -99 163 8 2120 71 0 14 chr3 13149998 13150278 -214374300 + AluY SINE Alu 1 276 -35 225 0 0 0 chr3 13150281 13150306 -214374272 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 439 250 125 7 chr3 13150385 13150521 -214374057 + MIR SINE MIR 89 240 -22 2216 90 0 3 chr3 13150723 13151023 -214373555 + AluSg1 SINE Alu 1 299 -10 297 0 0 0 chr3 13151024 13151057 -214373521 + (TA)n Simple_repeat Simple_repeat 2 34 0 473 245 198 40 chr3 13152929 13153182 -214371396 + L2 LINE L2 3020 3312 -1 2231 61 0 58 chr3 13153182 13153495 -214371083 - AluY SINE Alu -16 295 1 579 213 51 56 chr3 13153577 13153774 -214370804 - MIR SINE MIR 0 262 67 2127 109 0 26 chr3 13154565 13154869 -214369709 - AluSx SINE Alu -16 296 1 198 286 0 32 chr3 13154869 13154932 -214369646 - L2 LINE L2 -7 3265 3205 2199 116 0 0 chr3 13154947 13155248 -214369330 - AluSg SINE Alu -7 303 3 304 268 0 0 chr3 13155261 13155332 -214369246 - L2 LINE L2 -1 3271 3201 297 271 0 0 chr3 13155335 13155405 -214369173 - L2 LINE L2 0 3272 3203 251 257 0 43 chr3 13155409 13155479 -214369099 - L2 LINE L2 0 3272 3206 2327 91 3 0 chr3 13155606 13155914 -214368664 + AluSc SINE Alu 1 309 0 21 0 0 0 chr3 13156036 13156057 -214368521 + AT_rich Low_complexity Low_complexity 1 21 0 977 166 16 21 chr3 13156180 13156194 -214368384 + AluJb SINE Alu 120 133 -179 2279 101 7 0 chr3 13156194 13156502 -214368076 + AluSg SINE Alu 1 310 0 977 166 16 21 chr3 13156502 13156680 -214367898 + AluJb SINE Alu 133 311 -1 2203 103 0 0 chr3 13157110 13157410 -214367168 + AluY SINE Alu 1 300 -11 1705 158 3 14 chr3 13157427 13157719 -214366859 + AluJo SINE Alu 8 296 -16 772 185 51 6 chr3 13157771 13157928 -214366650 - MIR SINE MIR -78 184 21 2039 113 10 3 chr3 13158964 13159256 -214365322 - AluSx SINE Alu -18 294 1 486 141 0 0 chr3 13159319 13159404 -214365174 - AluS SINE Alu -1 311 227 1267 120 5 0 chr3 13160232 13160416 -214364162 - AluSx SINE Alu -127 185 1 198 0 0 0 chr3 13160420 13160442 -214364136 + (T)n Simple_repeat Simple_repeat 1 22 0 2354 94 0 0 chr3 13161691 13161977 -214362601 + AluSx SINE Alu 10 295 -17 548 278 57 44 chr3 13162639 13162866 -214361712 + MIR SINE MIR 33 262 0 285 240 184 22 chr3 13162914 13163017 -214361561 - MIR SINE MIR -94 114 44 4003 195 71 38 chr3 13163593 13163645 -214360933 + L1MB7 LINE L1 3925 3974 -2172 2140 132 0 10 chr3 13163645 13163780 -214360798 + AluSx SINE Alu 1 136 -176 2246 105 10 29 chr3 13163780 13164093 -214360485 + AluSq SINE Alu 1 307 -6 2140 132 0 10 chr3 13164093 13164261 -214360317 + AluSx SINE Alu 136 301 -11 4003 195 71 38 chr3 13164261 13164685 -214359893 + L1MB7 LINE L1 3974 4383 -1763 2302 106 0 0 chr3 13164685 13164977 -214359601 + AluSc SINE Alu 1 292 -17 4003 195 71 38 chr3 13164977 13165543 -214359035 + L1MB7 LINE L1 4383 5002 -1144 718 186 164 0 chr3 13165583 13165723 -214358855 + FRAM SINE Alu 1 157 -19 969 214 37 7 chr3 13165750 13166021 -214358557 + L1MB4 LINE L1 5902 6180 0 1893 99 3 128 chr3 13166031 13166375 -214358203 + AluSg1 SINE Alu 1 301 -8 2439 88 0 0 chr3 13166384 13166679 -214357899 + AluSg SINE Alu 1 295 -15 2726 179 74 59 chr3 13166680 13167397 -214357181 + L1MB7 LINE L1 5440 6167 -17 414 0 0 0 chr3 13167442 13167488 -214357090 + (TCTA)n Simple_repeat Simple_repeat 3 48 0 279 206 118 15 chr3 13167489 13167557 -214357021 - FRAM SINE Alu -25 141 67 321 213 32 32 chr3 13168642 13168736 -214355842 + MIR SINE MIR 50 143 -119 394 234 140 9 chr3 13169512 13169619 -214354959 - MIR SINE MIR -96 166 46 2321 110 0 0 chr3 13169700 13169990 -214354588 + AluSx SINE Alu 1 290 -22 254 280 47 19 chr3 13170116 13170223 -214354355 - L2 LINE L2 -508 2806 2697 1055 163 28 0 chr3 13171995 13172173 -214352405 + AluJb SINE Alu 120 302 -10 185 256 0 0 chr3 13172216 13172259 -214352319 - MER5B DNA MER1_type -135 43 1 371 256 234 0 chr3 13172292 13172429 -214352149 - MIR SINE MIR 0 262 94 1937 87 3 130 chr3 13174369 13174714 -214349864 + AluSg1 SINE Alu 1 301 -8 2439 88 0 0 chr3 13174723 13175018 -214349560 + AluSg SINE Alu 1 295 -15 2726 179 74 59 chr3 13175019 13175736 -214348842 + L1MB7 LINE L1 5440 6167 -17 486 0 0 0 chr3 13175781 13175835 -214348743 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 1655 156 0 50 chr3 13175836 13176119 -214348459 - AluJo SINE Alu -35 277 9 532 254 67 6 chr3 13176130 13176295 -214348283 - AluJo SINE Alu -1 311 137 493 293 28 83 chr3 13176743 13176996 -214347582 + MIR SINE MIR 16 254 -8 2257 101 0 14 chr3 13177476 13177773 -214346805 + AluSg1 SINE Alu 1 293 -16 219 36 0 0 chr3 13177773 13177801 -214346777 + (TA)n Simple_repeat Simple_repeat 2 29 0 843 150 0 0 chr3 13178724 13178857 -214345721 - AluJo SINE Alu -169 133 1 1794 79 0 0 chr3 13179371 13179586 -214344992 + AluSq SINE Alu 83 297 -16 1237 107 122 0 chr3 13179860 13180065 -214344513 + MER30 DNA MER1_type 1 230 0 465 260 80 0 chr3 13180258 13180408 -214344170 - MLT1K LTR MaLR -8 580 419 1741 83 0 9 chr3 13180905 13181133 -214343445 + AluY SINE Alu 80 305 -6 386 358 43 47 chr3 13181136 13181390 -214343188 - L2 LINE L2 -144 3128 2876 303 232 0 12 chr3 13181404 13181486 -214343092 + L1MB8 LINE L1 6089 6169 -9 280 333 54 0 chr3 13181687 13181816 -214342762 + MIR3 SINE MIR 2 137 -71 600 136 18 36 chr3 13181822 13181932 -214342646 + L1MB8 LINE L1 5562 5669 -509 2459 90 0 0 chr3 13181934 13182234 -214342344 + AluSg SINE Alu 1 300 -10 1077 117 0 60 chr3 13182244 13182480 -214342098 + AluSc SINE Alu 1 309 0 708 156 117 7 chr3 13182482 13182636 -214341942 + L1MB8 LINE L1 5661 5831 -347 1860 160 14 10 chr3 13182636 13182930 -214341648 + AluJo SINE Alu 1 295 -17 1726 176 20 16 chr3 13182932 13183238 -214341340 + AluJb SINE Alu 1 307 -5 2420 91 0 0 chr3 13183262 13183559 -214341019 - AluSx SINE Alu -15 297 1 565 284 43 34 chr3 13183621 13183973 -214340605 - L1MC5 LINE L1 -179 7782 7428 586 249 147 62 chr3 13184037 13184459 -214340119 + HAL1 LINE L1 1978 2435 -72 2205 127 0 0 chr3 13184509 13184808 -214339770 + AluSx SINE Alu 1 299 -13 1031 114 0 0 chr3 13185354 13185486 -214339092 + AluSq/x SINE Alu 1 132 -180 460 287 174 0 chr3 13185507 13185702 -214338876 + MIR SINE MIR 20 248 -14 692 295 189 19 chr3 13186331 13186813 -214337765 + L3 LINE CR1 723 1286 -291 1721 149 3 57 chr3 13187027 13187343 -214337235 - AluJo SINE Alu -1 311 13 207 0 0 0 chr3 13187359 13187382 -214337196 + (TTC)n Simple_repeat Simple_repeat 2 24 0 309 86 69 0 chr3 13187384 13187442 -214337136 - AluJb SINE Alu 0 302 241 1298 169 31 63 chr3 13187509 13187763 -214336815 - AluJb SINE Alu -66 246 1 331 257 81 62 chr3 13188020 13188208 -214336370 + L1MC4a LINE L1 5719 5917 -204 2135 69 87 0 chr3 13188208 13188483 -214336095 + AluSx SINE Alu 1 299 -13 331 257 81 62 chr3 13188483 13188566 -214336012 + L1MC4a LINE L1 5917 5997 -124 401 236 0 0 chr3 13188600 13188689 -214335889 + L3 LINE CR1 1423 1511 -66 758 148 31 0 chr3 13189663 13189791 -214334787 + FLAM_C SINE Alu 2 133 0 1397 203 23 36 chr3 13189799 13189930 -214334648 + AluJo SINE Alu 7 138 -174 189 0 0 0 chr3 13189930 13189951 -214334627 + (CA)n Simple_repeat Simple_repeat 2 22 0 1397 203 23 36 chr3 13189951 13190120 -214334458 + AluJo SINE Alu 138 303 -9 208 233 50 17 chr3 13190120 13190180 -214334398 + MIR SINE MIR 105 166 -96 1884 113 4 4 chr3 13191287 13191543 -214333035 + AluSg SINE Alu 38 293 -17 2267 112 0 0 chr3 13191552 13191847 -214332731 + AluSx SINE Alu 1 295 -17 402 292 15 8 chr3 13192534 13192664 -214331914 + MIR3 SINE MIR 71 201 -7 793 213 109 10 chr3 13192710 13193050 -214331528 - MLT1J2 LTR MaLR -19 427 1 440 281 134 6 chr3 13193454 13193618 -214330960 + MIR SINE MIR 19 203 -59 1927 119 8 4 chr3 13193649 13193917 -214330661 + AluJb SINE Alu 21 289 -23 341 241 181 23 chr3 13193954 13194087 -214330491 - L1MC4 LINE L1 -642 7400 7247 1696 168 18 18 chr3 13194102 13194425 -214330153 - AluJo SINE Alu 0 323 1 204 40 0 0 chr3 13194425 13194450 -214330128 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1033 182 166 11 chr3 13194501 13194777 -214329801 - L1MC4 LINE L1 -884 6901 6639 186 327 144 0 chr3 13194870 13194974 -214329604 - MIR SINE MIR -25 237 119 2410 56 3 43 chr3 13195024 13195329 -214329249 - AluY SINE Alu -18 293 1 540 193 107 7 chr3 13195413 13195596 -214328982 + L1M4 LINE L1 4981 5185 -961 939 154 46 36 chr3 13195605 13195662 -214328916 + L1MB7 LINE L1 5107 5162 -1012 2189 117 0 3 chr3 13195662 13195953 -214328625 - AluSx SINE Alu -22 290 1 939 154 46 36 chr3 13195953 13196184 -214328394 + L1MB7 LINE L1 5162 5393 -781 1913 174 0 3 chr3 13196184 13196477 -214328101 + AluJb SINE Alu 1 292 -20 939 154 46 36 chr3 13196477 13196521 -214328057 + L1MB7 LINE L1 5393 5435 -739 875 144 0 27 chr3 13196546 13196692 -214327886 + FLAM_C SINE Alu 1 142 -1 2201 122 3 3 chr3 13196729 13197032 -214327546 + AluSp SINE Alu 1 303 -10 1666 168 14 50 chr3 13197044 13197180 -214327398 + L1MB7 LINE L1 5477 5616 -568 1729 180 3 26 chr3 13197180 13197485 -214327093 + AluJo SINE Alu 9 306 -6 1666 168 14 50 chr3 13197485 13197711 -214326867 + L1MB7 LINE L1 5616 5826 -358 1476 186 4 8 chr3 13197721 13197973 -214326605 + AluJo SINE Alu 3 253 -59 581 159 0 0 chr3 13198029 13198136 -214326442 + L1MB7 LINE L1 6062 6168 -16 2118 137 10 0 chr3 13199109 13199408 -214325170 + AluSx SINE Alu 1 302 -10 682 221 30 43 chr3 13199409 13199530 -214325048 - LTR37A LTR ERV1 -60 366 248 1295 191 47 85 chr3 13199530 13199849 -214324729 + AluJo SINE Alu 1 307 -5 682 221 30 43 chr3 13199849 13199958 -214324620 - LTR37A LTR ERV1 -178 248 139 340 271 143 15 chr3 13200110 13200275 -214324303 - MIR SINE MIR -53 155 10 2179 134 0 6 chr3 13200699 13201013 -214323565 - AluSx SINE Alu 0 312 1 2009 149 3 0 chr3 13201018 13201320 -214323258 - AluSx SINE Alu -9 303 1 571 206 0 30 chr3 13202098 13202229 -214322349 + FLAM_A SINE Alu 1 127 -6 2172 125 3 0 chr3 13202625 13202922 -214321656 + AluSx SINE Alu 1 298 -14 1858 135 24 17 chr3 13202988 13203284 -214321294 + AluJo SINE Alu 1 298 -14 2266 115 0 10 chr3 13203306 13203619 -214320959 + AluSg SINE Alu 1 310 0 2569 54 0 0 chr3 13204515 13204809 -214319769 - AluY SINE Alu -17 294 1 200 265 36 48 chr3 13206465 13206548 -214318030 - L2 LINE L2 -208 3105 3024 1967 132 51 0 chr3 13207482 13207778 -214316800 + AluSx SINE Alu 1 311 -1 1141 61 0 0 chr3 13207778 13207910 -214316668 + AluY SINE Alu 1 132 -179 236 261 161 28 chr3 13209197 13209317 -214315261 - L2 LINE L2 -171 3142 2989 2519 96 6 0 chr3 13209317 13209670 -214314908 - THE1A LTR MaLR 0 355 1 236 261 161 28 chr3 13209670 13209729 -214314849 - L2 LINE L2 -324 2989 2939 1317 208 7 24 chr3 13210392 13210681 -214313897 + AluSx SINE Alu 1 284 -28 937 242 7 26 chr3 13210425 13210698 -214313880 + AluSx SINE Alu 34 301 -11 2304 122 0 0 chr3 13210845 13211148 -214313430 - AluSg SINE Alu -7 303 1 2486 68 0 0 chr3 13211155 13211466 -214313112 - AluY SINE Alu 0 311 1 740 242 11 78 chr3 13212201 13212470 -214312108 - L1MA7 LINE L1 -148 6143 5893 438 274 0 0 chr3 13212468 13212581 -214311997 + L1MA7 LINE L1 6173 6285 -6 * 1107 267 44 0 chr3 13213763 13214104 -214310474 - L1M4b LINE L1 -5910 949 594 469 71 43 0 chr3 13214105 13214175 -214310403 + LTR5 LTR ERVK 1 73 -896 6498 82 11 2 chr3 13214175 13215023 -214309555 + LTR5 LTR ERVK 115 969 0 21056 62 2 3 chr3 13215023 13217741 -214306837 + HERVK LTR ERVK 1 2715 -4528 17519 43 2 1 chr3 13217719 13219915 -214304663 + HERVK LTR ERVK 4951 7147 -96 * 417 95 11 168 chr3 13219918 13220013 -214304565 + SVA Other Other 857 936 -450 7664 59 7 21 chr3 13220013 13220996 -214303582 + LTR5 LTR ERVK 1 969 0 259 234 0 0 chr3 13221056 13221120 -214303458 - Charlie5 DNA MER1_type -119 2493 2430 1863 173 29 0 chr3 13221155 13221497 -214303081 - MLT1A1 LTR MaLR -1 364 13 1924 154 0 0 chr3 13221684 13221983 -214302595 + AluSx SINE Alu 1 299 -13 189 0 0 0 chr3 13222048 13222069 -214302509 + (GCCTG)n Simple_repeat Simple_repeat 5 25 0 2101 122 0 7 chr3 13222557 13222860 -214301718 + AluSx SINE Alu 1 301 -11 366 136 0 61 chr3 13222883 13222949 -214301629 + AluJb SINE Alu 21 82 -220 25 31 0 0 chr3 13222949 13222981 -214301597 + AT_rich Low_complexity Low_complexity 1 32 0 1281 142 40 36 chr3 13222986 13223211 -214301367 + AluJb SINE Alu 64 289 -23 1968 101 14 20 chr3 13223220 13223517 -214301061 + AluSx SINE Alu 1 295 -17 2023 32 4 4 chr3 13223746 13223993 -214300585 - AluY SINE Alu -1 310 64 2241 148 56 30 chr3 13223994 13224426 -214300152 - LTR8A LTR ERV1 -284 443 1 209 275 100 12 chr3 13224868 13224948 -214299630 + MIR3 SINE MIR 105 191 -17 180 333 17 0 chr3 13225273 13225333 -214299245 + MIR SINE MIR 50 110 -152 2009 98 0 4 chr3 13225470 13225747 -214298831 + AluSx SINE Alu 5 280 -32 207 0 0 0 chr3 13225747 13225770 -214298808 + (TAAA)n Simple_repeat Simple_repeat 1 23 0 278 313 125 10 chr3 13225789 13225885 -214298693 + MIR SINE MIR 21 127 -135 611 284 169 31 chr3 13225894 13226285 -214298293 - L2 LINE L2 0 3313 2869 807 148 31 0 chr3 13226890 13227018 -214297560 + FLAM_C SINE Alu 2 133 0 1200 216 23 36 chr3 13227026 13227157 -214297421 + AluJb SINE Alu 7 138 -174 189 0 0 0 chr3 13227157 13227178 -214297400 + (CA)n Simple_repeat Simple_repeat 2 22 0 1200 216 23 36 chr3 13227178 13227347 -214297231 + AluJb SINE Alu 138 303 -9 208 233 50 17 chr3 13227347 13227407 -214297171 + MIR SINE MIR 105 166 -96 1750 117 4 4 chr3 13228515 13228771 -214295807 + AluSg SINE Alu 38 293 -17 2134 112 0 0 chr3 13228780 13229075 -214295503 + AluSx SINE Alu 1 295 -17 267 320 40 24 chr3 13229286 13229411 -214295167 - MLT1K LTR MaLR -393 195 69 411 287 16 42 chr3 13229715 13229892 -214294686 + MIR3 SINE MIR 28 201 -7 815 213 109 10 chr3 13229938 13230278 -214294300 - MLT1J2 LTR MaLR -19 427 1 452 281 134 6 chr3 13230682 13230846 -214293732 + MIR SINE MIR 19 203 -59 1809 93 66 0 chr3 13230877 13231135 -214293443 + AluSg SINE Alu 21 295 -15 1918 144 7 13 chr3 13231149 13231454 -214293124 + AluJb SINE Alu 1 303 -9 666 176 16 102 chr3 13231489 13231676 -214292902 - AluJo SINE Alu -100 212 42 964 159 74 101 chr3 13231676 13231934 -214292644 - AluJo SINE Alu -17 295 45 2171 102 7 3 chr3 13231934 13232238 -214292340 - AluSx SINE Alu -3 309 5 380 227 92 87 chr3 13232244 13232342 -214292236 - MLT1D LTR MaLR -319 186 85 1631 163 38 7 chr3 13232342 13232630 -214291948 - AluJb SINE Alu -15 297 1 380 227 92 87 chr3 13232630 13232716 -214291862 - MLT1D LTR MaLR -420 85 1 342 256 35 0 chr3 13232966 13233052 -214291526 + MIR SINE MIR 59 147 -61 550 279 114 13 chr3 13234114 13234344 -214290234 + MIR SINE MIR 5 259 -3 259 162 73 88 chr3 13234453 13234521 -214290057 + MARNA DNA Mariner 450 516 -70 2125 77 0 4 chr3 13234523 13234797 -214289781 - AluSq SINE Alu -8 305 33 995 154 22 22 chr3 13234797 13234979 -214289599 - AluJb SINE Alu -10 302 121 2109 118 3 7 chr3 13236270 13236576 -214288002 + AluSq SINE Alu 1 305 -8 1841 84 95 7 chr3 13236586 13236871 -214287707 + AluSx SINE Alu 2 311 -1 429 291 59 13 chr3 13236908 13237475 -214287103 + L1MC4 LINE L1 7098 7629 -413 2132 96 3 0 chr3 13237556 13237848 -214286730 + AluY SINE Alu 1 293 -18 250 315 8 62 chr3 13237848 13237971 -214286607 + MER5B DNA MER1_type 32 149 -29 792 199 80 95 chr3 13238452 13238514 -214286064 - MIR SINE MIR 0 262 201 2255 95 0 0 chr3 13238514 13238809 -214285769 + AluSx SINE Alu 1 295 -17 792 199 80 95 chr3 13238809 13239008 -214285570 - MIR SINE MIR -61 201 5 418 238 165 61 chr3 13239031 13239195 -214285383 - MIR SINE MIR -60 202 22 414 259 122 27 chr3 13239985 13240132 -214284446 + MIR SINE MIR 6 166 -96 298 344 42 33 chr3 13240163 13240375 -214284203 - MIR SINE MIR -3 259 46 2228 108 0 0 chr3 13240492 13240797 -214283781 - AluSx SINE Alu -7 305 1 578 234 48 30 chr3 13240800 13240967 -214283611 + L2 LINE L2 3135 3304 -9 1488 155 26 37 chr3 13240981 13241252 -214283326 + AluJb SINE Alu 24 291 -21 2189 97 24 0 chr3 13241908 13242206 -214282372 - AluSx SINE Alu -7 305 1 719 238 48 29 chr3 13242451 13242657 -214281921 - MIR SINE MIR -51 211 2 308 217 23 205 chr3 13243188 13243302 -214281276 - MIR SINE MIR -17 245 112 1609 165 53 3 chr3 13243302 13243587 -214280991 - AluJo SINE Alu -13 299 1 308 217 23 205 chr3 13243587 13243616 -214280962 - MIR SINE MIR -150 112 79 2376 90 0 0 chr3 13243616 13243928 -214280650 + AluSx SINE Alu 1 312 0 308 217 23 205 chr3 13243928 13243948 -214280630 - MIR SINE MIR -183 79 57 2061 124 0 3 chr3 13243948 13244247 -214280331 + AluSc SINE Alu 1 298 -11 308 217 23 205 chr3 13244247 13244339 -214280239 - MIR SINE MIR -205 57 35 544 268 53 53 chr3 13244418 13244646 -214279932 + L2 LINE L2 3085 3312 -1 189 0 0 0 chr3 13245233 13245254 -214279324 + (A)n Simple_repeat Simple_repeat 1 21 0 2360 58 7 3 chr3 13245261 13245555 -214279023 - AluY SINE Alu -16 295 1 1112 66 0 0 chr3 13245557 13245693 -214278885 - AluSg SINE Alu -174 136 1 697 277 149 54 chr3 13245694 13246084 -214278494 + L2 LINE L2 2887 3313 0 255 211 0 0 chr3 13246279 13246331 -214278247 + L1ME3 LINE L1 6046 6097 -65 2223 100 7 0 chr3 13246336 13246637 -214277941 + AluSg SINE Alu 1 303 -7 2479 56 0 3 chr3 13246662 13246967 -214277611 + AluY SINE Alu 1 304 -7 1802 166 0 0 chr3 13247100 13247419 -214277159 - AluJb SINE Alu 0 319 1 264 59 0 0 chr3 13247474 13247508 -214277070 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 322 244 74 25 chr3 13248746 13248867 -214275711 + MIR SINE MIR 103 228 -34 * 348 260 39 10 chr3 13248830 13248934 -214275644 - MIR SINE MIR -3 259 153 2304 68 0 7 chr3 13248934 13249229 -214275349 - AluY SINE Alu -18 293 1 683 209 52 119 chr3 13249252 13249435 -214275143 + L1ME LINE L1 5289 5440 -722 654 179 0 0 chr3 13249435 13249541 -214275037 + U6 snRNA snRNA 2 107 0 683 209 52 119 chr3 13249541 13249701 -214274877 + L1ME LINE L1 5440 5609 -553 304 264 14 0 chr3 13249701 13249773 -214274805 - MIR SINE MIR -98 164 92 388 259 37 0 chr3 13249792 13249900 -214274678 + MIR SINE MIR 148 259 -3 299 282 113 8 chr3 13253670 13253794 -214270784 - MIR SINE MIR -85 177 41 590 222 19 61 chr3 13253828 13254040 -214270538 + MER3 DNA MER1_type 2 204 -5 223 301 97 44 chr3 13254051 13254164 -214270414 + MIR3 SINE MIR 66 184 -24 207 69 0 0 chr3 13254972 13255001 -214269577 + (A)n Simple_repeat Simple_repeat 1 29 0 462 300 246 29 chr3 13255806 13256086 -214268492 + MER102b DNA MER1_type 1 341 0 414 303 86 0 chr3 13256112 13256274 -214268304 + MIR SINE MIR 31 206 -56 545 281 112 31 chr3 13256445 13256669 -214267909 - MIR SINE MIR -20 242 1 513 320 115 24 chr3 13257933 13258264 -214266314 + L3 LINE CR1 1145 1505 -72 2225 61 0 58 chr3 13258327 13258640 -214265938 + AluY SINE Alu 1 295 -16 473 245 198 40 chr3 13258640 13258893 -214265685 - L2 LINE L2 -1 3312 3020 718 332 9 0 chr3 13259955 13260166 -214264412 + MIR SINE MIR 38 250 -12 739 240 29 124 chr3 13261314 13261736 -214262842 + MLT1J LTR MaLR 1 447 -64 2348 87 7 7 chr3 13261741 13262041 -214262537 - AluSq SINE Alu -13 300 1 699 92 0 23 chr3 13262052 13262204 -214262374 - AluSg/x SINE Alu 0 310 118 1828 63 0 9 chr3 13262205 13262427 -214262151 - AluSq SINE Alu -93 220 1 192 77 0 0 chr3 13262430 13262456 -214262122 + (T)n Simple_repeat Simple_repeat 1 26 0 497 89 129 20 chr3 13262480 13262581 -214261997 + L1MB7 LINE L1 6073 6184 0 823 193 27 16 chr3 13262609 13262796 -214261782 - MER5A DNA MER1_type 0 189 1 396 293 114 0 chr3 13262804 13262971 -214261607 + MIR SINE MIR 77 262 0 708 247 163 45 chr3 13263017 13263373 -214261205 - L2 LINE L2 0 3313 2916 957 97 0 0 chr3 13263760 13263884 -214260694 - FLAM_C SINE Alu -1 142 19 275 307 91 0 chr3 13263898 13263986 -214260592 - L2 LINE L2 -38 3234 3139 181 237 0 0 chr3 13263997 13264035 -214260543 + MER5B DNA MER1_type 4 41 -137 2445 66 7 10 chr3 13264264 13264568 -214260010 + AluY SINE Alu 3 305 -6 2404 81 0 7 chr3 13264573 13264871 -214259707 + AluSq SINE Alu 1 296 -17 1788 163 53 0 chr3 13264953 13265236 -214259342 + AluJo SINE Alu 5 302 -10 1935 157 6 10 chr3 13265236 13265548 -214259030 + AluJo SINE Alu 1 311 -1 322 233 68 0 chr3 13265549 13265622 -214258956 + Charlie4 DNA MER1_type 1884 1961 0 1749 177 25 0 chr3 13265674 13265957 -214258621 - AluJo SINE Alu -20 292 3 653 185 0 0 chr3 13265957 13266065 -214258513 - FLAM_A SINE Alu -34 108 1 252 272 68 68 chr3 13266070 13266217 -214258361 + MER5A DNA MER1_type 15 161 -28 252 352 40 8 chr3 13266118 13266243 -214258335 - MER5A DNA MER1_type -48 141 13 597 318 76 14 chr3 13266477 13266700 -214257878 + MIR SINE MIR 23 259 -3 2163 96 0 4 chr3 13266707 13266979 -214257599 - AluSg SINE Alu -39 271 1 2122 112 13 23 chr3 13266979 13267284 -214257294 - AluSx SINE Alu -10 302 1 784 305 146 32 chr3 13267428 13267555 -214257023 + L2 LINE L2 2565 2676 -596 1444 159 94 32 chr3 13267555 13267832 -214256746 - AluJo SINE Alu -14 298 5 784 305 146 32 chr3 13267832 13268330 -214256248 + L2 LINE L2 2676 3260 -12 1263 134 9 22 chr3 13268389 13268620 -214255958 - L1MB3 LINE L1 -4 6179 5952 1041 239 46 0 chr3 13268644 13268924 -214255654 - L1MC4 LINE L1 -456 7586 7294 1994 104 11 25 chr3 13268931 13269209 -214255369 - AluSx SINE Alu -23 289 16 357 240 96 27 chr3 13269971 13270117 -214254461 + MIR SINE MIR 80 235 -27 200 315 112 11 chr3 13270244 13270333 -214254245 - L2 LINE L2 -2 3270 3173 36 0 0 0 chr3 13270455 13270491 -214254087 + AT_rich Low_complexity Low_complexity 1 36 0 2458 50 3 7 chr3 13270894 13271193 -214253385 - AluY SINE Alu -13 298 1 697 151 8 0 chr3 13271213 13271339 -214253239 - FLAM_C SINE Alu -3 140 14 242 309 149 52 chr3 13271358 13271760 -214252818 + L2 LINE L2 2818 3258 -14 2513 66 13 0 chr3 13273394 13273696 -214250882 - AluY SINE Alu -5 306 1 760 212 35 6 chr3 13273696 13273866 -214250712 - AluSg/x SINE Alu -2 308 134 207 299 11 11 chr3 13273887 13273974 -214250604 + L2 LINE L2 2302 2388 -926 1313 108 0 0 chr3 13274403 13274579 -214249999 - AluSg/x SINE Alu 0 312 137 2033 153 3 0 chr3 13274583 13274877 -214249701 - AluSx SINE Alu -17 295 1 1339 105 41 0 chr3 13275414 13275586 -214248992 + AluSq SINE Alu 1 179 -134 398 343 11 17 chr3 13275895 13276214 -214248364 + G-rich Low_complexity Low_complexity 1 317 0 186 143 0 0 chr3 13276939 13276974 -214247604 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 1006 295 167 16 chr3 13277068 13278041 -214246537 + L2 LINE L2 1879 3009 -263 589 341 57 0 chr3 13278079 13278238 -214246340 + MIR SINE MIR 18 195 -67 1952 137 0 44 chr3 13278238 13278383 -214246195 + AluSx SINE Alu 1 151 -161 2133 91 31 11 chr3 13278383 13278669 -214245909 + AluSx SINE Alu 3 294 -18 1952 137 0 44 chr3 13278669 13278838 -214245740 + AluSx SINE Alu 151 301 -11 589 341 57 0 chr3 13278838 13278907 -214245671 + MIR SINE MIR 195 259 -3 261 271 54 47 chr3 13278917 13279046 -214245532 + L2 LINE L2 3133 3262 -51 287 217 17 0 chr3 13279555 13279615 -214244963 + MIR SINE MIR 78 138 -70 1838 173 0 17 chr3 13279645 13279946 -214244632 + AluJo SINE Alu 1 296 -16 2122 122 0 16 chr3 13280167 13280285 -214244293 + AluSx SINE Alu 5 123 -189 198 118 0 0 chr3 13280285 13280319 -214244259 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2122 122 0 16 chr3 13280319 13280511 -214244067 + AluSx SINE Alu 123 310 -2 2289 117 0 7 chr3 13280511 13280819 -214243759 + AluSx SINE Alu 1 306 -6 1130 130 0 30 chr3 13280819 13280988 -214243590 + AluSg/x SINE Alu 134 297 -15 304 179 0 119 chr3 13281076 13281103 -214243475 - MER116 DNA Mariner -4 76 47 2243 96 0 13 chr3 13281103 13281405 -214243173 + AluSx SINE Alu 1 298 -14 304 179 0 119 chr3 13281405 13281461 -214243117 - MER116 DNA Mariner -33 47 3 618 200 77 0 chr3 13281468 13281598 -214242980 + MIR SINE MIR 89 228 -34 219 303 30 15 chr3 13282044 13282110 -214242468 + MER91A DNA MER1_type 130 196 0 2026 117 72 3 chr3 13282670 13282961 -214241617 - AluSx SINE Alu -1 311 1 353 255 38 0 chr3 13282962 13283068 -214241510 + MIR SINE MIR 78 187 -75 1268 206 32 21 chr3 13283405 13283687 -214240891 - AluSg SINE Alu -25 285 1 1723 149 3 77 chr3 13283886 13284209 -214240369 - AluJo SINE Alu -13 299 1 2160 126 7 13 chr3 13285829 13286139 -214238439 + AluSx SINE Alu 1 308 -4 2248 89 10 17 chr3 13286144 13286446 -214238132 + AluSq SINE Alu 1 300 -13 2481 77 7 0 chr3 13286446 13286746 -214237832 + AluY SINE Alu 1 302 -9 616 161 0 73 chr3 13286748 13286872 -214237706 - AluJo/FLAM SINE Alu -196 116 2 407 141 12 47 chr3 13286889 13286974 -214237604 - FLAM_A SINE Alu -20 122 41 2159 142 0 3 chr3 13286974 13287270 -214237308 - AluSx SINE Alu -17 295 1 263 293 19 19 chr3 13287366 13287472 -214237106 + L2 LINE L2 2947 3052 -220 239 301 125 7 chr3 13287613 13287749 -214236829 - MIR SINE MIR -3 259 108 225 94 0 0 chr3 13287979 13288011 -214236567 + (TG)n Simple_repeat Simple_repeat 2 33 0 245 299 75 54 chr3 13289343 13289490 -214235088 - MIR SINE MIR -14 248 99 682 193 0 0 chr3 13289947 13290093 -214234485 - FLAM_C SINE Alu 0 151 6 288 200 17 0 chr3 13290137 13290197 -214234381 + MIR SINE MIR 88 148 -60 215 313 111 63 chr3 13290674 13290832 -214233746 + MIR SINE MIR 29 192 -70 2350 83 3 3 chr3 13291074 13291374 -214233204 - AluSp SINE Alu 0 313 14 2295 101 0 0 chr3 13291514 13291811 -214232767 - AluY SINE Alu -9 302 6 447 100 0 0 chr3 13291831 13291901 -214232677 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 1967 157 0 0 chr3 13291901 13292181 -214232397 - AluJb SINE Alu -32 280 1 2131 151 0 3 chr3 13292232 13292544 -214232034 - AluJo SINE Alu -1 311 1 2257 98 0 7 chr3 13292557 13292853 -214231725 - AluSq SINE Alu -19 294 1 542 303 118 26 chr3 13292873 13293220 -214231358 + L1MC/D LINE L1 5445 5823 -1985 1190 113 40 28 chr3 13293220 13293397 -214231181 + AluSq SINE Alu 1 179 -134 945 98 8 0 chr3 13293613 13293736 -214230842 + AluSg/x SINE Alu 170 293 -17 197 163 0 0 chr3 13293969 13294012 -214230566 + L2 LINE L2 2929 2971 -301 1871 148 50 0 chr3 13294265 13294562 -214230016 + AluSx SINE Alu 1 312 0 1129 68 0 0 chr3 13294562 13294694 -214229884 + AluY SINE Alu 1 132 -179 1982 121 29 36 chr3 13296600 13296906 -214227672 - AluSg SINE Alu -4 306 3 2397 105 0 0 chr3 13296908 13297212 -214227366 - AluSx SINE Alu -6 306 3 790 155 0 0 chr3 13297243 13297372 -214227206 - FLAM_C SINE Alu 0 133 5 419 277 55 21 chr3 13297372 13297555 -214227023 - MIR SINE MIR -55 207 16 275 82 0 7 chr3 13297895 13297942 -214226636 - AluYa8 SINE Alu -106 194 156 774 210 0 89 chr3 13298442 13298532 -214226046 - MER3 DNA MER1_type -8 201 105 2124 85 22 63 chr3 13298532 13298848 -214225730 + AluSq SINE Alu 2 304 -9 774 210 0 89 chr3 13298848 13298971 -214225607 - MER3 DNA MER1_type -104 105 7 390 231 46 9 chr3 13300457 13300565 -214224013 - MIR SINE MIR -3 259 148 299 208 28 14 chr3 13300584 13300656 -214223922 + MIR SINE MIR 92 164 -98 683 209 52 119 chr3 13300656 13300816 -214223762 - L1ME LINE L1 -553 5609 5483 560 198 0 0 chr3 13300816 13300922 -214223656 - U6 snRNA snRNA 0 107 2 683 209 52 119 chr3 13300922 13301105 -214223473 - L1ME LINE L1 -679 5483 5289 2445 68 0 7 chr3 13301127 13301422 -214223156 + AluY SINE Alu 1 293 -18 353 260 39 10 chr3 13301422 13301526 -214223052 + MIR SINE MIR 153 259 -3 325 244 74 25 chr3 13301489 13301610 -214222968 - MIR SINE MIR -34 228 103 * 228 67 0 0 chr3 13302847 13302877 -214221701 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 2182 141 0 0 chr3 13302932 13303237 -214221341 + AluSx SINE Alu 1 305 -7 196 286 0 32 chr3 13303252 13303315 -214221263 + L2 LINE L2 3205 3265 -7 2265 109 0 26 chr3 13303315 13303619 -214220959 + AluSx SINE Alu 1 296 -16 240 253 33 22 chr3 13304409 13304500 -214220078 + MIR SINE MIR 67 158 -104 2308 93 3 3 chr3 13304814 13305116 -214219462 - AluSx SINE Alu -10 302 1 332 296 21 21 chr3 13305118 13305304 -214219274 - L1MC4a LINE L1 -1904 5904 5719 2442 87 0 6 chr3 13305561 13305873 -214218705 + AluY SINE Alu 1 310 -1 1342 211 73 35 chr3 13305882 13306251 -214218327 + L1MC4 LINE L1 7516 7898 -144 2022 146 0 0 chr3 13306660 13306941 -214217637 + AluSx SINE Alu 1 281 -31 2130 140 3 3 chr3 13306943 13307250 -214217328 + AluJb SINE Alu 1 307 -5 2420 91 0 0 chr3 13307274 13307571 -214217007 - AluSx SINE Alu -15 297 1 513 286 42 37 chr3 13307633 13307986 -214216592 - L1MC5 LINE L1 -179 7782 7428 586 249 147 62 chr3 13308050 13308472 -214216106 + HAL1 LINE L1 1978 2435 -72 2231 124 0 0 chr3 13308522 13308821 -214215757 + AluSx SINE Alu 1 299 -13 1031 114 0 0 chr3 13309367 13309499 -214215079 + AluSq/x SINE Alu 1 132 -180 460 287 174 0 chr3 13309520 13309715 -214214863 + MIR SINE MIR 20 248 -14 692 295 189 19 chr3 13310344 13310826 -214213752 + L3 LINE CR1 723 1286 -291 206 234 0 0 chr3 13310997 13311044 -214213534 + L3 LINE CR1 1336 1382 -195 2664 40 0 0 chr3 13311503 13311799 -214212779 + AluY SINE Alu 1 296 -15 2345 82 7 3 chr3 13312733 13313025 -214211553 - AluSx SINE Alu -15 297 5 373 227 92 87 chr3 13313031 13313129 -214211449 - MLT1D LTR MaLR -319 186 85 1751 163 38 7 chr3 13313129 13313417 -214211161 - AluJb SINE Alu -15 297 1 373 227 92 87 chr3 13313417 13313503 -214211075 - MLT1D LTR MaLR -420 85 1 335 256 35 0 chr3 13313753 13313839 -214210739 + MIR SINE MIR 59 147 -61 537 256 81 11 chr3 13314900 13315076 -214209502 + MIR SINE MIR 5 194 -62 259 162 73 88 chr3 13315239 13315307 -214209271 + MARNA DNA Mariner 450 516 -70 2281 73 0 4 chr3 13315309 13315583 -214208995 - AluSq SINE Alu -8 305 33 1118 137 22 22 chr3 13315583 13315765 -214208813 - AluJb SINE Alu -10 302 121 180 88 59 29 chr3 13317019 13317053 -214207525 - MER5A DNA MER1_type -24 165 131 2278 113 3 7 chr3 13317058 13317367 -214207211 + AluSq SINE Alu 1 308 -5 1956 92 95 0 chr3 13317377 13317660 -214206918 + AluSx SINE Alu 2 311 -1 447 239 97 18 chr3 13317697 13317923 -214206655 + L1MC4 LINE L1 7098 7341 -701 324 214 7 29 chr3 13318080 13318220 -214206358 + CT-rich Low_complexity Low_complexity 2 138 0 2516 67 0 0 chr3 13318386 13318685 -214205893 + AluY SINE Alu 1 299 -12 1158 195 163 4 chr3 13318697 13318954 -214205624 + AluJo SINE Alu 4 301 -1 2133 141 7 0 chr3 13319213 13319510 -214205068 + AluSx SINE Alu 3 301 -11 2187 120 3 7 chr3 13319510 13319809 -214204769 + AluSx SINE Alu 1 298 -14 2187 110 0 3 chr3 13319809 13320101 -214204477 + AluSx SINE Alu 1 291 -21 260 288 167 15 chr3 13320192 13320324 -214204254 - L2 LINE L2 -249 3023 2872 2535 78 0 0 chr3 13320357 13320663 -214203915 + AluY SINE Alu 1 306 -5 218 307 139 0 chr3 13320804 13320905 -214203673 + L2 LINE L2 3158 3272 0 448 213 176 15 chr3 13320945 13321081 -214203497 - MER20 DNA MER1_type -5 214 57 349 164 33 0 chr3 13321124 13321185 -214203393 - MER20 DNA MER1_type -154 65 3 1677 159 35 14 chr3 13321998 13322288 -214202290 + AluJb SINE Alu 1 296 -16 2245 104 0 0 chr3 13322290 13322600 -214201978 + AluSc SINE Alu 1 310 0 25 0 0 0 chr3 13322655 13322680 -214201898 + AT_rich Low_complexity Low_complexity 1 25 0 1010 133 143 19 chr3 13322976 13323136 -214201442 - MER46A DNA MER2_type -2495 236 43 2190 138 0 0 chr3 13323136 13323433 -214201145 - AluSx SINE Alu -15 297 1 1010 133 143 19 chr3 13323433 13323482 -214201096 - MER46A DNA MER2_type -2688 43 1 463 304 120 14 chr3 13323492 13323709 -214200869 - MIR SINE MIR -3 259 20 2142 130 0 0 chr3 13324123 13324415 -214200163 - AluSq SINE Alu -21 292 1 627 284 43 43 chr3 13324415 13324619 -214199959 + MER113 DNA MER1_type? 189 395 -126 2578 87 0 0 chr3 13324619 13324929 -214199649 + AluSx SINE Alu 1 310 -2 627 284 43 43 chr3 13324929 13325052 -214199526 + MER113 DNA MER1_type? 394 516 -5 2463 84 3 10 chr3 13325650 13325961 -214198617 + AluSg SINE Alu 1 309 -1 2118 137 10 0 chr3 13326316 13326615 -214197963 + AluSx SINE Alu 1 302 -10 682 221 30 43 chr3 13326616 13326737 -214197841 - LTR37A LTR ERV1 -60 366 248 1295 191 47 85 chr3 13326737 13327056 -214197522 + AluJo SINE Alu 1 307 -5 682 221 30 43 chr3 13327056 13327165 -214197413 - LTR37A LTR ERV1 -178 248 139 340 271 143 15 chr3 13327317 13327482 -214197096 - MIR SINE MIR -53 155 10 2179 134 0 6 chr3 13327903 13328217 -214196361 - AluSx SINE Alu 0 312 1 2009 149 3 0 chr3 13328222 13328524 -214196054 - AluSx SINE Alu -9 303 1 571 206 0 30 chr3 13329302 13329433 -214195145 + FLAM_A SINE Alu 1 127 -6 2190 124 3 0 chr3 13329829 13330128 -214194450 + AluSx SINE Alu 1 300 -12 1888 132 24 17 chr3 13330194 13330490 -214194088 + AluJo SINE Alu 1 298 -14 2448 62 7 3 chr3 13330512 13330802 -214193776 + AluY SINE Alu 1 291 -20 207 0 0 0 chr3 13330813 13330836 -214193742 + (T)n Simple_repeat Simple_repeat 1 23 0 533 268 53 53 chr3 13331421 13331649 -214192929 - L2 LINE L2 -1 3312 3085 274 272 11 43 chr3 13331728 13331820 -214192758 + MIR SINE MIR 35 123 -139 2174 127 0 3 chr3 13331820 13332119 -214192459 - AluSc SINE Alu -11 298 1 621 146 0 9 chr3 13332127 13332139 -214192439 - FLAM_C SINE Alu -169 143 132 2472 87 0 0 chr3 13332139 13332450 -214192128 - AluY SINE Alu 0 311 1 621 146 0 9 chr3 13332450 13332547 -214192031 - FLAM_C SINE Alu -180 132 35 2543 55 0 0 chr3 13333524 13333814 -214190764 - AluY SINE Alu -21 290 1 248 308 0 0 chr3 13333815 13333880 -214190698 + L2 LINE L2 2996 3060 -212 203 430 0 0 chr3 13333954 13334040 -214190538 + L2 LINE L2 3111 3196 -76 272 350 0 0 chr3 13334534 13334653 -214189925 + T-rich Low_complexity Low_complexity 1 119 0 515 191 84 71 chr3 13384665 13384890 -214139688 - AluY SINE Alu -80 231 4 746 187 7 7 chr3 13384986 13385136 -214139442 + L1MB3 LINE L1 5948 6097 -86 1654 119 4 45 chr3 13385152 13385421 -214139157 - LTR8 LTR ERV1 -433 258 1 497 236 49 0 chr3 13385421 13385544 -214139034 - L1ME LINE L1 -401 5763 5635 395 114 48 59 chr3 13385745 13385777 -214138801 - L1ME LINE L1 -518 5647 5616 2525 136 50 68 chr3 13385777 13386276 -214138302 - LTR2B LTR ERV1 0 490 1 395 114 48 59 chr3 13386276 13386339 -214138239 - L1ME LINE L1 -549 5616 5552 1873 176 6 6 chr3 13386358 13386670 -214137908 - AluJb SINE Alu 0 312 1 786 216 13 0 chr3 13386670 13386823 -214137755 - L1ME LINE L1 -587 5579 5425 * 1205 212 21 82 chr3 13386810 13387090 -214137488 + L1M4 LINE L1 4848 5101 -1045 1980 150 10 16 chr3 13387090 13387404 -214137174 + AluJo SINE Alu 1 312 0 1205 212 21 82 chr3 13387404 13387500 -214137078 + L1M4 LINE L1 5101 5201 -945 2503 49 0 3 chr3 13387500 13387788 -214136790 + AluY SINE Alu 1 287 -24 3658 110 24 17 chr3 13387806 13388418 -214136160 + Tigger1 DNA MER2_type 1579 2263 -155 1338 243 36 13 chr3 13388552 13388817 -214135761 - L1MCa LINE L1 -2570 3856 3598 2026 115 39 39 chr3 13388817 13388991 -214135587 - AluSx SINE Alu 0 312 139 390 42 0 0 chr3 13388991 13389039 -214135539 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 2023 113 3 11 chr3 13389039 13389323 -214135255 - AluSx SINE Alu -30 282 1 2026 115 39 39 chr3 13389323 13389459 -214135119 - AluSx SINE Alu -171 141 1 1338 243 36 13 chr3 13389459 13389642 -214134936 - L1MCa LINE L1 -2828 3598 3398 1392 196 28 0 chr3 13389644 13389894 -214134684 - AluJo SINE Alu -12 300 44 873 123 15 8 chr3 13389903 13390033 -214134545 - AluJb SINE Alu -171 141 11 937 202 0 0 chr3 13390040 13390258 -214134320 - L1MCa LINE L1 -3006 3420 3203 553 225 0 39 chr3 13390262 13390391 -214134187 + FLAM_C SINE Alu 7 130 -13 180 0 0 0 chr3 13390426 13390446 -214134132 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2067 121 29 0 chr3 13390448 13390728 -214133850 - AluSg SINE Alu -22 288 1 1963 250 55 2 chr3 13390733 13391301 -214133277 - L1MCa LINE L1 -3234 3192 2595 1055 157 35 0 chr3 13391303 13391475 -214133103 - AluJo/FRAM SINE Alu -1 311 134 2295 99 3 10 chr3 13391475 13391787 -214132791 - AluY SINE Alu -1 310 1 1760 146 76 12 chr3 13391787 13392244 -214132334 - L1MCa LINE L1 -3947 2479 2126 1067 57 0 0 chr3 13392256 13392379 -214132199 - AluSc SINE Alu -186 123 1 631 138 288 0 chr3 13392379 13392539 -214132039 - L1MCa LINE L1 -4287 2139 1934 2025 144 0 0 chr3 13392796 13393087 -214131491 + AluSx SINE Alu 1 291 -21 2536 56 0 13 chr3 13393260 13393564 -214131014 + AluY SINE Alu 1 300 -11 1805 141 31 10 chr3 13393603 13393893 -214130685 + AluJo SINE Alu 5 300 -12 438 297 198 4 chr3 13394140 13394372 -214130206 + MLT1L LTR MaLR 216 492 -123 2279 110 0 3 chr3 13394754 13395054 -214129524 + AluSq SINE Alu 1 299 -14 290 243 14 14 chr3 13395141 13395211 -214129367 - Tigger2 DNA MER2_type 0 2718 2649 1776 164 0 30 chr3 13395211 13395515 -214129063 - AluJo SINE Alu -15 297 3 933 41 0 0 chr3 13395517 13395638 -214128940 - Tigger2 DNA MER2_type -162 2556 2436 1982 108 37 27 chr3 13395638 13395934 -214128644 + THE1B LTR MaLR 1 299 -65 2206 108 6 25 chr3 13395934 13396250 -214128328 - AluSg SINE Alu 0 310 1 2287 101 20 0 chr3 13396250 13396547 -214128031 - AluSg SINE Alu -6 304 2 2724 148 87 8 chr3 13396550 13396962 -214127616 + HUERS-P1 LTR ERV1 3914 4379 -1567 2223 80 0 0 chr3 13396962 13397237 -214127341 + AluSq SINE Alu 25 299 -14 2724 148 87 8 chr3 13397237 13397352 -214127226 + HUERS-P1 LTR ERV1 4379 4483 -1463 1090 54 0 8 chr3 13397353 13397483 -214127095 + AluY SINE Alu 98 226 -85 2132 104 13 13 chr3 13397489 13397798 -214126780 + AluSc SINE Alu 1 309 0 1926 129 0 44 chr3 13397819 13398147 -214126431 + AluSx SINE Alu 1 315 0 8094 98 16 33 chr3 13398147 13398425 -214126153 + HUERS-P1 LTR ERV1 5065 5346 -917 2365 78 3 3 chr3 13398425 13398719 -214125859 + AluSp SINE Alu 2 295 -18 8094 98 16 33 chr3 13398719 13399022 -214125556 + HUERS-P1 LTR ERV1 5346 5653 -610 1854 125 31 48 chr3 13399022 13399343 -214125235 - AluSx SINE Alu 0 316 1 8094 98 16 33 chr3 13399343 13399370 -214125208 + HUERS-P1 LTR ERV1 5653 5679 -584 2449 75 0 0 chr3 13399370 13399664 -214124914 + AluY SINE Alu 1 294 -17 8094 98 16 33 chr3 13399664 13400301 -214124277 + HUERS-P1 LTR ERV1 5679 6263 0 4661 104 6 56 chr3 13400301 13401029 -214123549 + LTR8 LTR ERV1 1 691 0 334 255 50 21 chr3 13401034 13401175 -214123403 - L1M4 LINE L1 -899 5247 5103 359 235 53 38 chr3 13401213 13401345 -214123233 - L1M4 LINE L1 -1014 5132 4999 202 239 0 0 chr3 13401358 13401404 -214123174 + T-rich Low_complexity Low_complexity 1 46 0 423 207 24 0 chr3 13401467 13401549 -214123029 - FLAM SINE Alu -20 123 40 416 200 139 133 chr3 13401579 13401692 -214122886 - MER5A DNA MER1_type 0 189 73 1857 141 3 17 chr3 13401692 13401983 -214122595 - AluJo SINE Alu -25 287 1 416 200 139 133 chr3 13401983 13402049 -214122529 - MER5A DNA MER1_type -116 73 9 2253 100 6 16 chr3 13402090 13402401 -214122177 + AluSp SINE Alu 2 309 -4 2217 126 0 0 chr3 13402409 13402711 -214121867 + AluSx SINE Alu 1 302 -10 377 242 0 22 chr3 13402925 13403016 -214121562 + MLT1F LTR MaLR 47 135 -407 603 122 28 37 chr3 13403019 13403126 -214121452 + L1MB8 LINE L1 6035 6140 -38 704 229 44 84 chr3 13403172 13403231 -214121347 + L1ME3 LINE L1 5919 5979 -183 2048 133 0 25 chr3 13403231 13403546 -214121032 + AluSx SINE Alu 1 307 -5 704 229 44 84 chr3 13403546 13403735 -214120843 + L1ME3 LINE L1 5979 6155 -7 1548 179 7 24 chr3 13403737 13404027 -214120551 - AluSp SINE Alu -17 296 12 2398 81 10 0 chr3 13404631 13404928 -214119650 - AluSg SINE Alu -10 300 1 452 341 25 47 chr3 13404932 13405296 -214119282 - HERV30 LTR ERV1 -2093 5029 4674 21 0 0 0 chr3 13405369 13405390 -214119188 + AT_rich Low_complexity Low_complexity 1 21 0 2345 76 0 3 chr3 13405395 13405686 -214118892 + AluSg SINE Alu 1 290 -20 1562 336 38 46 chr3 13406027 13406062 -214118516 - HERV30 LTR ERV1 -2813 4309 4275 1818 188 0 0 chr3 13406062 13406355 -214118223 + AluJo SINE Alu 3 295 -17 1562 336 38 46 chr3 13406355 13407437 -214117141 - HERV30 LTR ERV1 -2847 4275 3201 507 348 18 26 chr3 13407504 13407777 -214116801 - HERV30 LTR ERV1 -4020 3102 2832 413 100 0 0 chr3 13407849 13407909 -214116669 + Alu SINE Alu 246 305 -4 761 339 47 50 chr3 13407976 13408617 -214115961 - HERV30 LTR ERV1 -5568 1554 916 399 298 57 19 chr3 13408810 13408968 -214115610 - HERV30 LTR ERV1 -6646 1611 1448 * 1714 258 47 59 chr3 13408945 13409557 -214115021 - HERV30 LTR ERV1 -5188 1075 471 2463 77 0 7 chr3 13409674 13409984 -214114594 + AluY SINE Alu 1 308 -3 275 377 45 13 chr3 13409996 13410150 -214114428 - HERV30 LTR ERV1 -6080 183 25 3406 136 30 76 chr3 13410174 13410806 -214113772 - LTR26 LTR ERV1 0 603 1 371 88 29 88 chr3 13410808 13410830 -214113748 + LTR49-int LTR ERV1 2084 2106 -4225 2015 143 74 36 chr3 13410830 13411018 -214113560 - LTR23 LTR ERV1 0 437 258 2344 87 3 13 chr3 13411018 13411328 -214113250 + AluSx SINE Alu 1 307 -5 2015 143 74 36 chr3 13411328 13411560 -214113018 - LTR23 LTR ERV1 -179 258 1 371 88 29 88 chr3 13411560 13411605 -214112973 + LTR49-int LTR ERV1 2106 2147 -4184 2071 121 3 33 chr3 13411610 13411729 -214112849 - L1PB3 LINE L1 -7 6147 6026 363 23 0 0 chr3 13411729 13411773 -214112805 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2233 64 11 0 chr3 13411773 13412054 -214112524 - AluSp SINE Alu -29 284 1 2071 121 3 33 chr3 13412054 13412263 -214112315 - L1PB3 LINE L1 -126 6028 5828 1839 128 37 3 chr3 13412263 13412560 -214112018 - AluSx SINE Alu -3 309 3 2250 91 7 3 chr3 13412597 13412905 -214111673 - AluY SINE Alu -2 309 1 1400 220 58 47 chr3 13412916 13413305 -214111273 - L1M4 LINE L1 -1807 4339 3943 2213 89 0 13 chr3 13413305 13413609 -214110969 - AluSc SINE Alu -9 300 1 1400 220 58 47 chr3 13413609 13413669 -214110909 - L1M4 LINE L1 -2203 3943 3885 1446 204 72 135 chr3 13413669 13414394 -214110184 - LTR8A LTR ERV1 0 727 49 976 153 10 61 chr3 13414396 13414592 -214109986 - LTR8 LTR ERV1 -503 188 3 5038 69 14 43 chr3 13414592 13415172 -214109406 - LTR8 LTR ERV1 0 691 134 2169 29 39 59 chr3 13415172 13415479 -214109099 + AluY SINE Alu 1 301 -10 5038 69 14 43 chr3 13415479 13415610 -214108968 - LTR8 LTR ERV1 -557 134 1 519 138 0 12 chr3 13415672 13415752 -214108826 - AluJ/FLAM SINE Alu -225 87 9 552 238 67 54 chr3 13415763 13415986 -214108592 - L1M4 LINE L1 -2368 3778 3553 22 35 0 0 chr3 13416002 13416031 -214108547 + GC_rich Low_complexity Low_complexity 1 29 0 2008 103 3 0 chr3 13416436 13416726 -214107852 + AluSx SINE Alu 1 291 -21 1812 157 0 0 chr3 13416741 13417040 -214107538 + AluJo SINE Alu 1 299 -13 1736 130 44 0 chr3 13417304 13417597 -214106981 + AluSq SINE Alu 1 306 -7 216 0 0 0 chr3 13417600 13417624 -214106954 + (TA)n Simple_repeat Simple_repeat 2 25 0 2141 65 25 0 chr3 13418683 13418983 -214105595 - AluSp SINE Alu 0 307 1 694 263 28 49 chr3 13419459 13419503 -214105075 - L1M4 LINE L1 -2585 3561 3518 2345 74 0 10 chr3 13419503 13419812 -214104766 - AluY SINE Alu -5 306 1 694 263 28 49 chr3 13419812 13419852 -214104726 - L1M4 LINE L1 -2628 3518 3479 1597 161 39 7 chr3 13419852 13420137 -214104441 + AluJb SINE Alu 1 294 -18 694 263 28 49 chr3 13420137 13420336 -214104242 - L1M4 LINE L1 -2667 3479 3283 236 185 62 0 chr3 13420341 13420406 -214104172 - L1MB5 LINE L1 -6 6168 6100 1789 175 59 71 chr3 13420406 13420845 -214103733 - LTR8A LTR ERV1 0 727 294 291 260 68 0 chr3 13420843 13420916 -214103662 - LTR8 LTR ERV1 -613 78 1 * 814 191 48 33 chr3 13420919 13421129 -214103449 - L1MB5 LINE L1 -74 6100 5888 807 173 0 33 chr3 13421129 13421279 -214103299 - AluJb SINE Alu -82 230 86 860 145 0 0 chr3 13421300 13421424 -214103154 - FLAM_C SINE Alu -8 125 2 23 0 0 0 chr3 13421433 13421456 -214103122 + AT_rich Low_complexity Low_complexity 1 23 0 393 284 36 4 chr3 13421556 13421736 -214102842 - L1MEd LINE L1 -1231 1259 983 22 0 0 0 chr3 13421741 13421763 -214102815 + AT_rich Low_complexity Low_complexity 1 22 0 1911 130 7 20 chr3 13421770 13421906 -214102672 + AluSx SINE Alu 1 137 -175 2228 105 3 0 chr3 13421906 13422210 -214102368 + AluSp SINE Alu 2 306 -7 1911 130 7 20 chr3 13422210 13422373 -214102205 + AluSx SINE Alu 137 296 -16 786 161 0 0 chr3 13422400 13422518 -214102060 - FLAM_C SINE Alu -15 118 1 1949 138 0 3 chr3 13422583 13422874 -214101704 - AluSx SINE Alu -20 292 3 991 193 0 6 chr3 13422891 13423062 -214101516 - FAM SINE Alu -1 174 5 864 144 0 98 chr3 13423117 13423267 -214101311 + Tigger2a DNA MER2_type 1 133 -2575 2205 88 0 0 chr3 13423267 13423561 -214101017 + AluY SINE Alu 1 294 -17 864 144 0 98 chr3 13423561 13423583 -214100995 + Tigger2a DNA MER2_type 133 156 -278 363 122 0 0 chr3 13423583 13423632 -214100946 - THE1A LTR MaLR 0 355 307 2016 117 0 0 chr3 13423635 13423926 -214100652 - AluSg1 SINE Alu -18 291 1 664 158 44 0 chr3 13423946 13424060 -214100518 - FLAM_C SINE Alu -19 124 6 1054 209 72 19 chr3 13424065 13424372 -214100206 - L1M4 LINE L1 -1440 4706 4384 1609 161 3 30 chr3 13424378 13424432 -214100146 - AluJb SINE Alu -21 291 237 2190 158 12 6 chr3 13424432 13424773 -214099805 + MER61A LTR ERV1 1 343 0 1609 161 3 30 chr3 13424773 13425016 -214099562 - AluJb SINE Alu -75 237 2 2089 68 64 20 chr3 13425069 13425365 -214099213 - AluY SINE Alu -2 309 1 2028 113 6 49 chr3 13425380 13425706 -214098872 - AluSx SINE Alu 0 312 1 740 147 0 0 chr3 13425711 13425820 -214098758 - MER50 LTR ERV1 -556 178 70 674 173 0 0 chr3 13425821 13425931 -214098647 + FLAM_C SINE Alu 19 128 -15 2304 80 0 3 chr3 13425936 13426247 -214098331 + AluY SINE Alu 1 310 -1 3961 168 11 18 chr3 13426247 13426910 -214097668 + L1P5 LINE L1 4484 5150 -1004 1999 121 0 14 chr3 13426910 13427207 -214097371 + AluSx SINE Alu 1 293 -19 3961 168 11 18 chr3 13427207 13427667 -214096911 + L1P5 LINE L1 5150 5595 -559 2124 108 3 7 chr3 13427667 13427974 -214096604 - AluSx SINE Alu -6 306 1 3961 168 11 18 chr3 13427974 13427987 -214096591 + L1P5 LINE L1 5595 5607 -547 1824 173 0 0 chr3 13428805 13429117 -214095461 + AluJo SINE Alu 1 312 0 412 334 66 36 chr3 13429541 13429846 -214094732 + HUERS-P1 LTR ERV1 5946 6259 -4 * 3818 164 13 50 chr3 13429833 13429848 -214094730 - LTR49-int LTR ERV1 -4230 2101 2087 3853 128 13 37 chr3 13429848 13430466 -214094112 + LTR26 LTR ERV1 1 603 0 3818 164 13 50 chr3 13430466 13430922 -214093656 - LTR49-int LTR ERV1 -4244 2087 1666 2064 82 0 17 chr3 13430922 13431213 -214093365 - AluSg1 SINE Alu -19 290 5 3818 164 13 50 chr3 13431213 13431498 -214093080 - LTR49-int LTR ERV1 -4665 1666 1372 2114 98 11 0 chr3 13431533 13431819 -214092759 - AluY SINE Alu -13 298 10 549 115 67 5 chr3 13431914 13432018 -214092560 - LTR49-int LTR ERV1 -2946 1934 1290 336 257 0 14 chr3 13432072 13432142 -214092436 - tRNA-Glu-GAG tRNA tRNA 0 75 7 1914 154 77 100 chr3 13432169 13432637 -214091941 - LTR49-int LTR ERV1 -5141 1190 734 2030 133 0 7 chr3 13432639 13432948 -214091630 + AluSx SINE Alu 1 307 -5 606 188 10 0 chr3 13432949 13433045 -214091533 - LTR49-int LTR ERV1 -6234 97 1 672 103 62 0 chr3 13433051 13433169 -214091409 + LTR49 LTR ERV1 486 592 -3 3605 195 53 51 chr3 13433172 13433387 -214091191 + L1ME1 LINE L1 5236 5449 -717 261 57 0 0 chr3 13433387 13433422 -214091156 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 9924 41 73 5 chr3 13433422 13434697 -214089881 - SVA Other Other -19 1367 6 3605 195 53 51 chr3 13434697 13435406 -214089172 + L1ME1 LINE L1 5448 6161 -5 641 198 41 8 chr3 13435598 13435719 -214088859 + FLAM_C SINE Alu 2 126 -17 1097 127 12 0 chr3 13435874 13436040 -214088538 + AluSg/x SINE Alu 131 298 -14 1734 217 5 8 chr3 13436042 13436433 -214088145 + L1MB4 LINE L1 4817 5206 -940 2026 103 31 0 chr3 13436457 13436747 -214087831 - AluSx SINE Alu -13 299 1 4635 137 37 18 chr3 13436749 13437568 -214087010 + L1MB4 LINE L1 5337 6170 -10 769 237 0 0 chr3 13437746 13437898 -214086680 - FRAM SINE Alu -14 152 1 2440 42 0 33 chr3 13437973 13438279 -214086299 + AluY SINE Alu 1 296 -15 265 282 53 0 chr3 13438535 13438666 -214085912 + L1MDa LINE L1 2444 2581 -3959 552 223 12 54 chr3 13439194 13439360 -214085218 - L1ME2 LINE L1 -10 6154 5996 * 580 274 17 45 chr3 13439348 13439514 -214085064 + L1MDa LINE L1 2918 3074 -3466 1562 171 0 63 chr3 13439514 13439847 -214084731 - AluJo SINE Alu 0 312 1 580 274 17 45 chr3 13439847 13439968 -214084610 + L1MDa LINE L1 3074 3197 -3343 1041 169 0 11 chr3 13440253 13440436 -214084142 + AluJb SINE Alu 122 302 -10 23 0 0 0 chr3 13440451 13440474 -214084104 + AT_rich Low_complexity Low_complexity 1 23 0 203 266 31 62 chr3 13440531 13440595 -214083983 - MIR SINE MIR -62 146 85 392 256 115 39 chr3 13440636 13440792 -214083786 + L2 LINE L2 3136 3303 -10 329 134 119 15 chr3 13440816 13440883 -214083695 - MLT1B LTR MaLR 0 390 317 1080 125 11 11 chr3 13440890 13441066 -214083512 - AluY SINE Alu 0 311 136 541 80 91 11 chr3 13441066 13441154 -214083424 - MLT1B LTR MaLR -58 332 238 874 141 0 15 chr3 13441417 13441552 -214083026 + FLAM_A SINE Alu 1 133 0 423 83 0 0 chr3 13441700 13441760 -214082818 + (TC)n Simple_repeat Simple_repeat 1 60 0 757 165 0 0 chr3 13441953 13442074 -214082504 + FLAM_C SINE Alu 1 121 -22 2286 64 0 10 chr3 13442084 13442381 -214082197 + AluY SINE Alu 1 294 -17 977 196 10 10 chr3 13443011 13443205 -214081373 + L1PB4 LINE L1 5949 6142 -14 2027 128 0 13 chr3 13443206 13443511 -214081067 - AluSx SINE Alu -11 301 1 5341 38 8 159 chr3 13443769 13444792 -214079786 - SVA Other Other -518 868 1 466 270 209 23 chr3 13444803 13445018 -214079560 - MIR SINE MIR -2 260 6 2013 116 13 16 chr3 13445061 13445372 -214079206 + AluSx SINE Alu 1 310 -2 945 221 61 35 chr3 13445393 13445540 -214079038 + MIR SINE MIR 5 162 -100 2031 160 39 16 chr3 13445540 13445921 -214078657 - MLT1B LTR MaLR 0 390 1 945 221 61 35 chr3 13445921 13446004 -214078574 + MIR SINE MIR 162 241 -21 437 318 79 9 chr3 13446340 13446554 -214078024 - MIR SINE MIR -1 261 33 1300 35 12 6 chr3 13446584 13446754 -214077824 + (TTTC)n Simple_repeat Simple_repeat 4 174 0 2025 121 19 0 chr3 13446786 13447093 -214077485 - AluSq SINE Alu 0 313 1 617 216 54 11 chr3 13447186 13447371 -214077207 - MLT1K LTR MaLR -17 571 379 351 150 0 0 chr3 13447372 13447432 -214077146 + (TC)n Simple_repeat Simple_repeat 1 60 0 2153 116 3 0 chr3 13447432 13447742 -214076836 - AluSx SINE Alu -1 311 1 740 262 87 36 chr3 13447742 13448017 -214076561 - MLT1K LTR MaLR -162 426 138 225 0 0 0 chr3 13448028 13448053 -214076525 + (TG)n Simple_repeat Simple_repeat 1 25 0 258 32 0 0 chr3 13448055 13448086 -214076492 + (GA)n Simple_repeat Simple_repeat 2 32 0 450 204 34 109 chr3 13448472 13448619 -214075959 + L2 LINE L2 3137 3272 0 227 294 42 42 chr3 13448668 13448787 -214075791 + MIR3 SINE MIR 90 208 0 883 187 0 0 chr3 13449187 13449342 -214075236 - AluJ SINE Alu -11 291 137 270 234 56 56 chr3 13449461 13449568 -214075010 - MIR SINE MIR -63 145 39 292 301 0 0 chr3 13449689 13449782 -214074796 - L2 LINE L2 -10 3303 3211 1335 198 36 4 chr3 13450401 13450679 -214073899 - AluJb SINE Alu -21 291 5 812 165 0 8 chr3 13450695 13450828 -214073750 - AluJ SINE Alu -178 134 3 257 87 29 58 chr3 13451049 13451118 -214073460 + (TTCC)n Simple_repeat Simple_repeat 3 69 0 1304 202 126 37 chr3 13451178 13451559 -214073019 - MLT1C LTR MaLR -52 415 1 2430 140 5 10 chr3 13451701 13452107 -214072471 - L1MB3 LINE L1 -1 6182 5779 247 222 0 0 chr3 13452283 13452328 -214072250 + MIR SINE MIR 187 231 -31 9457 135 89 43 chr3 13452499 13453882 -214070696 + L1MCa LINE L1 1 1492 -4934 215 30 0 30 chr3 13453882 13453915 -214070663 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 9457 135 89 43 chr3 13453915 13454379 -214070199 + L1MCa LINE L1 1492 1933 -4493 1888 96 0 0 chr3 13454381 13454669 -214069909 + AluSx SINE Alu 35 322 0 1772 95 137 0 chr3 13454719 13454982 -214069596 - AluSg SINE Alu 0 300 2 243 0 0 0 chr3 13454984 13455011 -214069567 + (CTTG)n Simple_repeat Simple_repeat 3 29 0 10942 117 98 42 chr3 13455011 13455049 -214069529 - HUERS-P1 LTR ERV1 -2206 4057 4023 2422 74 0 0 chr3 13455049 13455360 -214069218 - AluY SINE Alu 0 311 1 2094 103 0 10 chr3 13455360 13455662 -214068916 - AluSq SINE Alu -14 299 1 10942 117 98 42 chr3 13455662 13455754 -214068824 - HUERS-P1 LTR ERV1 -2240 4023 3938 2364 68 7 0 chr3 13455754 13456062 -214068516 - AluY SINE Alu 0 311 2 10942 117 98 42 chr3 13456062 13456747 -214067831 - HUERS-P1 LTR ERV1 -2325 3938 3293 1390 143 20 143 chr3 13456747 13456962 -214067616 - AluYb8 SINE Alu 0 308 151 2276 66 3 0 chr3 13456962 13457249 -214067329 - AluY SINE Alu -23 288 1 1390 143 20 143 chr3 13457249 13457383 -214067195 - AluYb8 SINE Alu -157 151 2 10942 117 98 42 chr3 13457383 13457585 -214066993 - HUERS-P1 LTR ERV1 -2970 3293 3104 2202 108 0 0 chr3 13457585 13457891 -214066687 + AluSx SINE Alu 3 308 -4 10942 117 98 42 chr3 13457891 13458928 -214065650 - HUERS-P1 LTR ERV1 -3159 3104 874 637 149 19 19 chr3 13458929 13459083 -214065495 + CT-rich Low_complexity Low_complexity 1 154 0 9950 103 65 59 chr3 13459083 13459366 -214065212 - HUERS-P1 LTR ERV1 -4355 1908 1628 1659 111 111 0 chr3 13459366 13459636 -214064942 - AluSx SINE Alu -12 300 1 9950 103 65 59 chr3 13459636 13459786 -214064792 - HUERS-P1 LTR ERV1 -4635 1628 1480 2235 96 0 0 chr3 13459786 13460088 -214064490 - AluSx SINE Alu -10 302 1 9950 103 65 59 chr3 13460088 13460391 -214064187 - HUERS-P1 LTR ERV1 -4783 1480 1180 333 0 0 0 chr3 13460391 13460428 -214064150 + (GA)n Simple_repeat Simple_repeat 2 38 0 9950 103 65 59 chr3 13460428 13461427 -214063151 - HUERS-P1 LTR ERV1 -5083 1180 173 2397 69 0 23 chr3 13461427 13461731 -214062847 + AluY SINE Alu 1 297 -14 9950 103 65 59 chr3 13461731 13461906 -214062672 - HUERS-P1 LTR ERV1 -6090 173 1 3894 101 17 124 chr3 13461906 13461972 -214062606 - LTR8 LTR ERV1 0 691 620 2273 83 4 0 chr3 13461972 13462249 -214062329 + AluSp SINE Alu 3 280 -33 2611 49 0 10 chr3 13462250 13462555 -214062023 + AluY SINE Alu 1 302 -9 3894 101 17 124 chr3 13462555 13463173 -214061405 - LTR8 LTR ERV1 -71 620 95 6688 60 5 1 chr3 13463173 13464243 -214060335 + L1PA6 LINE L1 5079 6151 -3 3894 101 17 124 chr3 13464243 13464329 -214060249 - LTR8 LTR ERV1 -596 95 1 622 246 27 0 chr3 13464335 13464522 -214060056 + L1MC/D LINE L1 5254 5445 -725 * 856 213 127 8 chr3 13464513 13464781 -214059797 + L1ME1 LINE L1 5863 6162 -4 1694 184 4 0 chr3 13464836 13465142 -214059436 + AluJb SINE Alu 9 315 0 282 247 120 10 chr3 13465197 13465349 -214059229 + L1MC/D LINE L1 5428 5588 -609 2128 120 0 10 chr3 13465389 13465568 -214059010 - AluSx SINE Alu 0 312 136 2288 106 0 0 chr3 13465568 13465860 -214058718 - AluSq SINE Alu -21 292 1 2128 120 0 10 chr3 13465860 13465988 -214058590 - AluSx SINE Alu -176 136 8 1426 151 42 101 chr3 13465988 13466043 -214058535 - LTR54 LTR ERV1 -134 376 319 2399 77 0 26 chr3 13466043 13466354 -214058224 - AluY SINE Alu -8 303 1 1426 151 42 101 chr3 13466354 13466429 -214058149 - LTR54 LTR ERV1 -191 319 241 2149 126 0 40 chr3 13466429 13466754 -214057824 + AluSx SINE Alu 1 312 0 1426 151 42 101 chr3 13466754 13467001 -214057577 - LTR54 LTR ERV1 -269 241 19 1721 156 39 39 chr3 13467001 13467309 -214057269 - AluJb SINE Alu -4 308 1 1426 151 42 101 chr3 13467309 13467327 -214057251 - LTR54 LTR ERV1 -491 19 1 1947 154 0 7 chr3 13467402 13467707 -214056871 + AluJo SINE Alu 1 303 -9 632 224 51 67 chr3 13467919 13468232 -214056346 + L1MC5 LINE L1 7624 7931 -30 278 239 11 57 chr3 13468260 13468348 -214056230 + MIR SINE MIR 98 181 -81 2269 89 17 0 chr3 13468383 13468675 -214055903 - AluSg SINE Alu -13 297 1 2196 115 3 0 chr3 13468763 13469059 -214055519 - AluSx SINE Alu -15 297 1 293 263 13 13 chr3 13470571 13470647 -214053931 + MER5A DNA MER1_type 49 124 -65 2254 104 3 7 chr3 13470652 13470960 -214053618 - AluSx SINE Alu -5 307 1 1956 173 0 3 chr3 13470961 13471274 -214053304 - AluJo SINE Alu 0 312 1 420 106 91 0 chr3 13471469 13471535 -214053043 - HY1 scRNA scRNA -39 73 2 2060 118 3 20 chr3 13471546 13471704 -214052874 - AluSx SINE Alu -21 291 139 2337 94 0 3 chr3 13471704 13472001 -214052577 - AluSc SINE Alu -13 296 1 2060 118 3 20 chr3 13472001 13472138 -214052440 - AluSx SINE Alu -173 139 1 1039 162 241 9 chr3 13472354 13472582 -214051996 + AluSg1 SINE Alu 13 293 -16 1174 126 283 0 chr3 13472595 13472825 -214051753 + AluSx SINE Alu 1 295 -7 1546 174 11 4 chr3 13472825 13473106 -214051472 + AluSx SINE Alu 1 283 -29 2105 99 7 23 chr3 13474940 13475242 -214049336 + AluSg SINE Alu 1 297 -13 333 301 8 15 chr3 13475311 13475444 -214049134 - AluSg/x SINE Alu 0 302 171 27 62 0 0 chr3 13475473 13475521 -214049057 + AT_rich Low_complexity Low_complexity 1 48 0 1915 125 0 8 chr3 13476152 13476416 -214048162 - AluSx SINE Alu -50 262 1 185 189 0 0 chr3 13476424 13476461 -214048117 + L2 LINE L2 1750 1786 -1528 27 0 0 0 chr3 13477170 13477197 -214047381 + GC_rich Low_complexity Low_complexity 1 27 0 41 21 0 0 chr3 13477443 13477491 -214047087 + GC_rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr3 13477906 13477935 -214046643 + GC_rich Low_complexity Low_complexity 1 29 0 871 76 0 0 chr3 13478269 13478374 -214046204 - AluJb SINE Alu -207 105 1 22 35 0 0 chr3 13478397 13478426 -214046152 + AT_rich Low_complexity Low_complexity 1 29 0 2353 88 3 16 chr3 13478524 13478832 -214045746 + AluSg SINE Alu 1 304 -6 889 97 16 8 chr3 13479698 13479822 -214044756 + AluSg SINE Alu 12 136 -174 2301 60 7 20 chr3 13479825 13480124 -214044454 + AluY SINE Alu 1 295 -16 189 0 0 0 chr3 13480131 13480152 -214044426 + (T)n Simple_repeat Simple_repeat 1 21 0 407 298 60 44 chr3 13480739 13480987 -214043591 - L2 LINE L2 -1 3312 3061 254 237 0 58 chr3 13481132 13481271 -214043307 + (CAAA)n Simple_repeat Simple_repeat 3 133 0 2274 97 7 0 chr3 13481899 13482199 -214042379 + AluSx SINE Alu 1 302 -10 1343 154 15 133 chr3 13482395 13482733 -214041845 - AluJb SINE Alu -4 298 1 338 309 62 27 chr3 13482927 13483073 -214041505 - MIR SINE MIR -46 162 11 362 249 92 31 chr3 13483683 13483792 -214040786 + MIR SINE MIR 37 138 -124 2250 90 0 23 chr3 13483792 13484093 -214040485 + AluSg SINE Alu 1 294 -16 362 249 92 31 chr3 13484093 13484193 -214040385 + MIR SINE MIR 138 256 -6 283 236 14 28 chr3 13484297 13484369 -214040209 + MER5A DNA MER1_type 32 102 -87 1244 211 86 11 chr3 13484433 13484713 -214039865 + AluJo SINE Alu 2 302 0 1889 154 14 0 chr3 13484922 13485215 -214039363 + AluSx SINE Alu 1 297 -15 2233 97 28 0 chr3 13485428 13485717 -214038861 - AluSc SINE Alu -12 297 1 276 164 0 55 chr3 13485718 13485773 -214038805 - MIR SINE MIR -98 164 113 2339 52 7 14 chr3 13485879 13486170 -214038408 + AluY SINE Alu 1 289 -22 1473 227 121 145 chr3 13486201 13486562 -214038016 + L2 LINE L2 1852 2220 -1093 1613 192 0 42 chr3 13486562 13486875 -214037703 + AluJo SINE Alu 1 300 -12 1473 227 121 145 chr3 13486875 13487005 -214037573 + L2 LINE L2 2220 2352 -961 746 183 43 32 chr3 13487005 13487191 -214037387 - AluJo SINE Alu -4 308 121 1473 227 121 145 chr3 13487191 13487431 -214037147 + L2 LINE L2 2352 2596 -717 2620 77 0 0 chr3 13487431 13487742 -214036836 - AluY SINE Alu 0 311 1 1473 227 121 145 chr3 13487742 13488337 -214036241 + L2 LINE L2 2596 3312 -1 201 318 16 0 chr3 13488338 13488401 -214036177 + L2 LINE L2 3247 3310 -3 245 109 22 0 chr3 13488492 13488538 -214036040 + GA-rich Low_complexity Low_complexity 2 48 0 189 107 0 0 chr3 13488533 13488561 -214036017 + (GAAAA)n Simple_repeat Simple_repeat 5 32 0 * 982 200 0 0 chr3 13490331 13490491 -214034087 - AluSg/x SINE Alu 0 312 153 347 217 47 28 chr3 13491247 13491353 -214033225 + MER103 DNA DNA 50 157 -9 333 68 0 0 chr3 13491483 13491527 -214033051 + Alu SINE Alu 1 44 -257 192 97 0 0 chr3 13491727 13491758 -214032820 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 296 265 53 69 chr3 13493873 13494062 -214030516 - MER20B DNA MER1_type -597 186 1 603 272 136 0 chr3 13494062 13494253 -214030325 + MLT1K LTR MaLR 133 349 -239 25 0 0 0 chr3 13495160 13495185 -214029393 + GC_rich Low_complexity Low_complexity 1 25 0 211 284 149 14 chr3 13496263 13496337 -214028241 - MIR SINE MIR -168 94 11 234 0 0 0 chr3 13496419 13496445 -214028133 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 197 309 117 11 chr3 13496514 13496608 -214027970 + L2 LINE L2 2932 3035 -237 258 32 0 0 chr3 13496919 13496950 -214027628 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 207 288 243 0 chr3 13497134 13497245 -214027333 - L2 LINE L2 -213 3059 2922 2293 52 29 0 chr3 13497254 13497554 -214027024 - AluY SINE Alu 0 308 1 292 274 18 35 chr3 13497585 13497698 -214026880 - L2 LINE L2 -488 2826 2716 267 280 54 42 chr3 13499384 13499552 -214025026 - L2 LINE L2 -213 3059 2890 281 323 57 16 chr3 13501200 13501324 -214023254 + MIR SINE MIR 125 253 -9 297 274 263 11 chr3 13501432 13501611 -214022967 + MIR SINE MIR 21 244 -18 2432 96 3 0 chr3 13502976 13503288 -214021290 - AluSp SINE Alu 0 313 1 904 122 23 0 chr3 13503481 13503612 -214020966 - AluJo SINE Alu -178 134 1 257 304 135 30 chr3 13503628 13503858 -214020720 - L1ME LINE L1 -308 5813 5560 359 67 0 33 chr3 13504140 13504200 -214020378 + (CAT)n Simple_repeat Simple_repeat 1 58 0 316 291 107 0 chr3 13504315 13504418 -214020160 - MIR SINE MIR -93 169 56 185 250 0 23 chr3 13505072 13505116 -214019462 - MIR SINE MIR -76 132 90 1445 143 0 9 chr3 13505654 13505870 -214018708 + AluSg/x SINE Alu 77 290 -20 564 233 30 8 chr3 13506467 13506600 -214017978 + FLAM_C SINE Alu 3 138 -5 444 293 79 6 chr3 13506715 13506879 -214017699 + MIR SINE MIR 71 246 -16 230 247 13 52 chr3 13508272 13508349 -214016229 - MER5B DNA MER1_type -3 175 102 206 362 0 0 chr3 13508323 13508381 -214016197 + MER5A DNA MER1_type 63 120 -69 * 2378 86 0 7 chr3 13508958 13509259 -214015319 - AluSg SINE Alu -11 299 1 310 292 78 62 chr3 13509653 13509884 -214014694 - MIR SINE MIR -15 247 18 555 172 106 0 chr3 13511526 13511677 -214012901 - Charlie5 DNA MER1_type -92 2520 2354 2047 143 10 0 chr3 13511684 13511991 -214012587 + AluSx SINE Alu 1 310 -2 248 217 47 47 chr3 13512026 13512090 -214012488 - Charlie5 DNA MER1_type -2461 163 97 2448 65 13 3 chr3 13512090 13512397 -214012181 + AluY SINE Alu 1 310 -1 248 217 47 47 chr3 13512397 13512438 -214012140 - Charlie5 DNA MER1_type -2526 98 58 1269 173 32 22 chr3 13512475 13512753 -214011825 - L1PA16 LINE L1 0 6166 5886 3445 85 42 24 chr3 13512774 13512817 -214011761 - L1MA3 LINE L1 -5 6300 6259 2392 87 7 0 chr3 13512817 13513115 -214011463 - AluSg SINE Alu -10 300 1 3445 85 42 24 chr3 13513115 13513625 -214010953 - L1MA3 LINE L1 -46 6259 5737 365 208 47 28 chr3 13513792 13513898 -214010680 + MER103 DNA DNA 50 157 -9 2135 87 7 4 chr3 13514028 13514304 -214010274 + AluSx SINE Alu 1 277 -35 2548 57 0 16 chr3 13514305 13514621 -214009957 + AluY SINE Alu 1 311 0 522 228 103 0 chr3 13514666 13514811 -214009767 + Charlie2 DNA MER1_type 36 195 -2587 214 254 0 0 chr3 13515123 13515178 -214009400 + MIR SINE MIR 90 144 -118 389 273 45 9 chr3 13515251 13515361 -214009217 + L2 LINE L2 3192 3305 -8 319 243 215 35 chr3 13515387 13515531 -214009047 - MIR SINE MIR -61 201 32 2091 109 0 4 chr3 13516028 13516304 -214008274 - AluSq SINE Alu -23 290 16 1802 145 84 10 chr3 13516600 13516911 -214007667 + MER1B DNA MER1_type 6 339 0 2190 105 0 7 chr3 13517580 13517875 -214006703 + AluSg SINE Alu 16 308 -2 2415 88 3 0 chr3 13517936 13518233 -214006345 - AluSg SINE Alu -12 298 1 633 283 62 52 chr3 13518831 13518951 -214005627 - MER113 DNA MER1_type? -5 516 399 2288 125 0 0 chr3 13518951 13519263 -214005315 - AluSx SINE Alu 0 312 1 633 283 62 52 chr3 13519263 13519467 -214005111 - MER113 DNA MER1_type? -122 399 189 2142 130 0 0 chr3 13519467 13519759 -214004819 + AluSq SINE Alu 1 292 -21 439 303 119 18 chr3 13520173 13520391 -214004187 + MIR SINE MIR 20 259 -3 1023 137 137 19 chr3 13520401 13520450 -214004128 + MER46A DNA MER2_type 1 43 -2688 2190 138 0 0 chr3 13520450 13520747 -214003831 + AluSx SINE Alu 1 297 -15 1023 137 137 19 chr3 13520747 13520908 -214003670 + MER46A DNA MER2_type 43 236 0 25 0 0 0 chr3 13521204 13521229 -214003349 + AT_rich Low_complexity Low_complexity 1 25 0 2312 93 0 0 chr3 13521284 13521599 -214002979 - AluSc SINE Alu 0 315 1 1677 159 35 14 chr3 13521601 13521891 -214002687 - AluJb SINE Alu -16 296 1 186 43 0 0 chr3 13522054 13522077 -214002501 + (A)n Simple_repeat Simple_repeat 1 23 0 349 164 33 0 chr3 13522706 13522767 -214001811 + MER20 DNA MER1_type 3 65 -154 448 213 176 15 chr3 13522810 13522946 -214001632 + MER20 DNA MER1_type 57 214 -5 218 307 139 0 chr3 13522986 13523087 -214001491 - L2 LINE L2 0 3272 3158 2508 79 0 0 chr3 13523230 13523533 -214001045 - AluY SINE Alu -8 303 1 2153 109 0 7 chr3 13523789 13524082 -214000496 - AluSx SINE Alu -21 291 1 2194 141 0 0 chr3 13524082 13524380 -214000198 - AluSx SINE Alu -14 298 1 293 275 42 49 chr3 13524391 13524533 -214000045 + L2 LINE L2 3171 3311 -2 220 376 24 0 chr3 13524637 13524762 -213999816 - L2 LINE L2 -470 2844 2717 2162 99 25 3 chr3 13524907 13525191 -213999387 + AluSx SINE Alu 14 303 -9 1318 213 56 39 chr3 13525199 13525500 -213999078 + L1ME1 LINE L1 5767 6061 -105 1035 182 0 0 chr3 13525500 13525670 -213998908 - FAM SINE Alu -5 170 1 1318 213 56 39 chr3 13525670 13525685 -213998893 + L1ME1 LINE L1 6061 6074 -92 2435 76 0 0 chr3 13525685 13525976 -213998602 - AluY SINE Alu -20 291 1 1318 213 56 39 chr3 13525976 13526015 -213998563 + L1ME1 LINE L1 6074 6129 -37 215 261 57 11 chr3 13526294 13526382 -213998196 - L2 LINE L2 -1077 2237 2146 464 194 20 0 chr3 13527912 13528010 -213996568 - MIR SINE MIR -32 230 131 574 293 0 7 chr3 13528039 13528186 -213996392 - MIR SINE MIR -106 156 11 393 312 130 9 chr3 13528347 13528562 -213996016 + MIR SINE MIR 2 242 -20 660 267 21 69 chr3 13529304 13529544 -213995034 + MIR SINE MIR 30 259 -3 247 336 80 8 chr3 13529559 13529684 -213994894 - L2 LINE L2 -1 3312 3179 214 246 46 31 chr3 13530067 13530132 -213994446 - L2 LINE L2 -250 3022 2957 2211 121 3 3 chr3 13531058 13531364 -213993214 + AluSx SINE Alu 1 306 -6 2024 132 0 7 chr3 13531369 13531650 -213992928 + AluSx SINE Alu 16 294 -18 2578 63 0 0 chr3 13531650 13531952 -213992626 + AluY SINE Alu 1 303 -8 217 299 19 58 chr3 13532257 13532411 -213992167 + L2 LINE L2 2944 3091 -181 424 257 118 0 chr3 13533369 13533513 -213991065 - L1ME3A LINE L1 -32 6138 5978 241 299 259 6 chr3 13533524 13533698 -213990880 - MIR SINE MIR -26 236 19 187 274 53 80 chr3 13533654 13533767 -213990811 + MIR SINE MIR 27 136 -72 * 510 284 82 64 chr3 13533830 13533956 -213990622 - MLT1J1 LTR MaLR -112 334 212 2512 68 0 13 chr3 13533956 13534266 -213990312 + AluY SINE Alu 1 306 -5 510 284 82 64 chr3 13534266 13534467 -213990111 - MLT1J1 LTR MaLR -234 212 1 191 286 0 0 chr3 13534471 13534520 -213990058 + L2 LINE L2 3213 3261 -11 258 303 53 75 chr3 13535050 13535301 -213989277 + L1ME4a LINE L1 5687 5931 -190 2352 109 3 0 chr3 13535301 13535613 -213988965 - AluSq SINE Alu 0 313 1 258 303 53 75 chr3 13535613 13535681 -213988897 + L1ME4a LINE L1 5931 5999 -122 24 32 0 0 chr3 13535705 13535736 -213988842 + AT_rich Low_complexity Low_complexity 1 31 0 230 267 50 75 chr3 13536255 13536375 -213988203 + MER5B DNA MER1_type 7 123 -55 2561 65 0 3 chr3 13536394 13536700 -213987878 - AluY SINE Alu -6 305 1 973 102 0 0 chr3 13536751 13536879 -213987699 + AluSp/q SINE Alu 176 303 -10 344 182 23 11 chr3 13536879 13536967 -213987611 - L1MB2 LINE L1 -36 6135 6047 247 280 10 0 chr3 13536992 13537092 -213987486 - L1MC4 LINE L1 -1 8041 7941 1300 102 0 0 chr3 13537389 13537555 -213987023 - AluSg/x SINE Alu -14 296 131 510 320 93 0 chr3 13537710 13537904 -213986674 - MIR SINE MIR 0 262 51 1895 156 19 10 chr3 13538058 13538365 -213986213 + AluJo SINE Alu 1 310 -2 234 347 75 0 chr3 13538397 13538544 -213986034 + MIR3 SINE MIR 40 197 -11 422 250 191 0 chr3 13538691 13538843 -213985735 + MIR SINE MIR 11 191 -71 219 125 0 0 chr3 13538859 13538899 -213985679 + (TG)n Simple_repeat Simple_repeat 2 41 0 700 175 8 0 chr3 13538912 13539032 -213985546 - FLAM_C SINE Alu -12 121 1 1742 168 35 3 chr3 13539054 13539339 -213985239 - AluJo SINE Alu -18 294 1 711 123 9 9 chr3 13539340 13539454 -213985124 - L1MC1 LINE L1 -9 6324 6211 364 309 80 55 chr3 13540378 13540531 -213984047 - MLT1L LTR MaLR -10 605 457 1162 33 26 0 chr3 13540531 13540683 -213983895 - L1PA5 LINE L1 0 6154 5999 364 309 80 55 chr3 13540683 13540959 -213983619 - MLT1L LTR MaLR -158 457 176 878 294 104 30 chr3 13541384 13541789 -213982789 + MLT1K LTR MaLR 144 578 -10 497 201 148 58 chr3 13542017 13542206 -213982372 - MIR SINE MIR -26 236 31 407 235 41 0 chr3 13542220 13542318 -213982260 - MER91C DNA MER1_type -38 102 1 252 369 76 0 chr3 13542588 13542745 -213981833 - MIR SINE MIR -14 248 80 2727 48 0 0 chr3 13543507 13543818 -213980760 + AluY SINE Alu 1 311 0 301 285 180 48 chr3 13543836 13544142 -213980436 - L2 LINE L2 -159 3113 2763 716 181 30 91 chr3 13544142 13544256 -213980322 + MER5A DNA MER1_type 1 99 -90 2336 95 7 0 chr3 13544256 13544551 -213980027 + AluSx SINE Alu 1 297 -15 716 181 30 91 chr3 13544551 13544635 -213979943 + MER5A DNA MER1_type 99 187 -2 301 285 180 48 chr3 13544635 13544676 -213979902 - L2 LINE L2 -509 2763 2729 1810 159 36 13 chr3 13544927 13545228 -213979350 - AluSx SINE Alu -4 308 1 705 83 0 10 chr3 13545228 13545324 -213979254 - AluSq/x SINE Alu -177 135 41 304 192 26 13 chr3 13545397 13545475 -213979103 + L1ME4a LINE L1 5946 6024 -97 238 228 38 25 chr3 13545924 13546003 -213978575 + MLT1K LTR MaLR 497 576 -12 2436 87 7 3 chr3 13546193 13546503 -213978075 + AluSx SINE Alu 1 311 -1 310 313 90 0 chr3 13546780 13546914 -213977664 - MIR SINE MIR -31 231 86 2126 139 13 3 chr3 13546986 13547336 -213977242 + AluJo SINE Alu 1 353 0 264 290 93 0 chr3 13548053 13548160 -213976418 + MIR SINE MIR 27 143 -119 227 250 0 0 chr3 13549040 13549104 -213975474 + (TG)n Simple_repeat Simple_repeat 2 65 0 180 77 0 0 chr3 13550280 13550306 -213974272 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 224 220 44 11 chr3 13550369 13550460 -213974118 + (TGAA)n Simple_repeat Simple_repeat 1 94 0 547 279 118 60 chr3 13550950 13551530 -213973048 - L2 LINE L2 -45 3227 2612 300 289 240 0 chr3 13551708 13551812 -213972766 - MER5A DNA MER1_type 0 189 61 252 247 68 14 chr3 13551825 13551898 -213972680 - MER5A DNA MER1_type -82 107 31 1286 217 173 8 chr3 13551930 13552294 -213972284 - MLT1K LTR MaLR -43 545 122 321 299 31 0 chr3 13552623 13552720 -213971858 + MIR SINE MIR 89 188 -74 2262 85 27 10 chr3 13553068 13553361 -213971217 - AluSx SINE Alu -14 298 1 264 261 15 0 chr3 13553380 13553445 -213971133 - MIR SINE MIR -85 123 58 1736 83 4 18 chr3 13553470 13553699 -213970879 + AluSp SINE Alu 88 313 0 2178 108 3 54 chr3 13553703 13554019 -213970559 + AluSp SINE Alu 2 301 -12 663 229 14 0 chr3 13554038 13554182 -213970396 - MIR SINE MIR -12 250 105 311 267 50 40 chr3 13554202 13554303 -213970275 - L2 LINE L2 -49 3223 3122 2211 120 0 3 chr3 13554318 13554610 -213969968 - AluSq SINE Alu -22 291 1 928 180 0 44 chr3 13554892 13555075 -213969503 - FAM SINE Alu 0 175 1 219 262 16 0 chr3 13555463 13555524 -213969054 + MIR SINE MIR 82 143 -65 245 232 29 94 chr3 13555620 13555649 -213968929 - L1ME4a LINE L1 -1 6120 6091 1942 115 38 54 chr3 13555649 13555963 -213968615 + AluSq SINE Alu 1 309 -4 245 232 29 94 chr3 13555963 13556071 -213968507 - L1ME4a LINE L1 -30 6091 5992 522 290 65 9 chr3 13556093 13556307 -213968271 + MIR SINE MIR 19 244 -18 192 164 0 49 chr3 13556911 13556972 -213967606 + CT-rich Low_complexity Low_complexity 1 58 0 1084 226 91 47 chr3 13556994 13557424 -213967154 - L2 LINE L2 -20 3293 2845 2443 88 0 10 chr3 13558046 13558353 -213966225 - AluSg1 SINE Alu -5 304 1 709 340 76 18 chr3 13559204 13559384 -213965194 - L2 LINE L2 -433 2881 2713 2288 118 0 0 chr3 13559384 13559680 -213964898 + AluSx SINE Alu 1 296 -16 709 340 76 18 chr3 13559680 13560054 -213964524 - L2 LINE L2 -601 2713 2295 732 143 110 0 chr3 13560061 13560215 -213964363 + MIR SINE MIR 90 260 -2 225 292 22 0 chr3 13560216 13560305 -213964273 + (TA)n Simple_repeat Simple_repeat 1 91 0 1834 146 52 7 chr3 13561995 13562283 -213962295 - AluJo SINE Alu -11 301 1 185 283 33 75 chr3 13562290 13562410 -213962168 - MIR SINE MIR -44 218 104 451 302 43 0 chr3 13562576 13562715 -213961863 + MIR SINE MIR 26 170 -92 2133 108 52 0 chr3 13562787 13563073 -213961505 + AluSx SINE Alu 1 301 -11 216 293 13 0 chr3 13564763 13564838 -213959740 + (TA)n Simple_repeat Simple_repeat 1 76 0 732 143 110 0 chr3 13564853 13565007 -213959571 - MIR SINE MIR -2 260 90 672 297 56 25 chr3 13565014 13565374 -213959204 + L2 LINE L2 2295 2665 -649 2458 84 3 0 chr3 13565386 13565682 -213958896 - AluSp SINE Alu -16 297 1 690 187 0 22 chr3 13565682 13565816 -213958762 - AluJo/FLAM SINE Alu -169 133 3 934 312 130 24 chr3 13565818 13566633 -213957945 + L2 LINE L2 2248 3214 -99 305 221 39 39 chr3 13567092 13567196 -213957382 - MIR SINE MIR -78 184 81 2195 189 35 36 chr3 13567415 13567935 -213956643 + LTR40a LTR ERVL 1 519 0 387 267 0 11 chr3 13568235 13568325 -213956253 - L1MC4 LINE L1 -1339 6703 6615 * 392 286 0 11 chr3 13568281 13568372 -213956206 + L1MC4 LINE L1 6614 6703 -1339 * 398 300 0 0 chr3 13568332 13568422 -213956156 - L1MC4 LINE L1 -1339 6703 6614 2299 125 0 0 chr3 13568445 13568749 -213955829 - AluSx SINE Alu -8 304 1 294 309 196 33 chr3 13568753 13568945 -213955633 - L2 LINE L2 -9 3304 3145 2246 102 0 0 chr3 13568945 13569228 -213955350 + AluSq SINE Alu 1 283 -30 450 0 0 0 chr3 13569228 13569278 -213955300 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 294 309 196 33 chr3 13569278 13569566 -213955012 - L2 LINE L2 -167 3146 2738 253 309 228 0 chr3 13569740 13569863 -213954715 - MIR3 SINE MIR -27 181 31 936 166 96 0 chr3 13569899 13570086 -213954492 - MER3 DNA MER1_type -4 205 1 1712 163 54 0 chr3 13570154 13570448 -213954130 + AluJo SINE Alu 1 310 -2 2440 93 0 0 chr3 13570507 13570808 -213953770 - AluSx SINE Alu -11 301 1 290 342 0 0 chr3 13570892 13570968 -213953610 - L2 LINE L2 0 3313 3238 270 250 24 113 chr3 13571025 13571149 -213953429 - L2 LINE L2 -225 3047 2935 1793 175 3 16 chr3 13571183 13571486 -213953092 + AluJo SINE Alu 1 299 -13 382 197 7 132 chr3 13571697 13571773 -213952805 - MIR SINE MIR -53 209 160 2265 98 6 31 chr3 13571773 13572090 -213952488 + AluSx SINE Alu 1 309 -3 382 197 7 132 chr3 13572090 13572165 -213952413 - MIR SINE MIR -102 160 77 198 349 94 7 chr3 13572271 13572420 -213952158 + L2 LINE L2 2871 3032 -240 327 353 41 8 chr3 13572785 13572907 -213951671 + L2 LINE L2 3119 3244 -28 1085 235 30 0 chr3 13572940 13573174 -213951404 - MIR SINE MIR 0 262 22 741 47 16 70 chr3 13573500 13573628 -213950950 + L1PA13 LINE L1 6042 6162 -1 411 285 44 61 chr3 13573704 13573932 -213950646 - L1MEc LINE L1 -4000 2396 2173 231 36 0 0 chr3 13573974 13574002 -213950576 + (TA)n Simple_repeat Simple_repeat 2 29 0 2299 80 0 10 chr3 13574002 13574291 -213950287 - AluSg SINE Alu -24 286 1 276 164 0 55 chr3 13574397 13574452 -213950126 + MIR SINE MIR 113 164 -98 2233 97 28 0 chr3 13574453 13574742 -213949836 + AluSc SINE Alu 1 297 -12 1889 154 14 0 chr3 13574955 13575248 -213949330 - AluSx SINE Alu -15 297 1 200 35 35 0 chr3 13575299 13575328 -213949250 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1356 207 74 14 chr3 13575450 13575735 -213948843 - AluJo SINE Alu -6 306 5 283 236 14 28 chr3 13575802 13575874 -213948704 - MER5A DNA MER1_type -87 102 32 362 249 92 31 chr3 13575978 13576078 -213948500 - MIR SINE MIR -6 256 164 2250 90 0 23 chr3 13576078 13576379 -213948199 - AluSg SINE Alu -16 294 1 362 249 92 31 chr3 13576379 13576488 -213948090 - MIR SINE MIR -98 164 37 338 309 62 27 chr3 13577098 13577244 -213947334 + MIR SINE MIR 11 162 -46 1343 154 15 133 chr3 13577438 13577776 -213946802 + AluJb SINE Alu 1 298 -4 2274 97 7 0 chr3 13577972 13578272 -213946306 - AluSx SINE Alu -10 302 1 2292 105 3 7 chr3 13578787 13579091 -213945487 - AluSx SINE Alu -9 303 1 1802 145 84 10 chr3 13579743 13580054 -213944524 - MER1B DNA MER1_type 0 339 6 2091 109 0 4 chr3 13580350 13580626 -213943952 + AluSq SINE Alu 16 290 -23 319 243 215 35 chr3 13581123 13581267 -213943311 + MIR SINE MIR 32 201 -61 389 273 45 9 chr3 13581293 13581403 -213943175 - L2 LINE L2 -8 3305 3192 214 254 0 0 chr3 13581476 13581531 -213943047 - MIR SINE MIR -118 144 90 522 228 103 0 chr3 13581843 13581988 -213942590 - Charlie2 DNA MER1_type -2667 195 36 2583 57 0 13 chr3 13582033 13582348 -213942230 - AluY SINE Alu 0 311 1 2170 87 7 0 chr3 13582349 13582624 -213941954 - AluSx SINE Alu -35 277 1 365 208 47 28 chr3 13582754 13582860 -213941718 - MER103 DNA DNA -9 157 50 3417 87 42 24 chr3 13583027 13583537 -213941041 + L1MA3 LINE L1 5737 6259 -46 1540 165 20 10 chr3 13583537 13583834 -213940744 + AluSg SINE Alu 1 300 -10 3417 87 42 24 chr3 13583834 13583877 -213940701 + L1MA3 LINE L1 6259 6300 -5 1253 176 32 22 chr3 13583898 13584176 -213940402 + L1PA16 LINE L1 5886 6166 0 248 217 47 47 chr3 13584213 13584254 -213940324 + Charlie5 DNA MER1_type 58 98 -2526 2448 65 13 3 chr3 13584254 13584561 -213940017 - AluY SINE Alu -1 310 1 248 217 47 47 chr3 13584561 13584625 -213939953 + Charlie5 DNA MER1_type 97 163 -2461 2047 143 10 0 chr3 13584660 13584967 -213939611 - AluSx SINE Alu -2 310 1 555 172 106 0 chr3 13584974 13585125 -213939453 + Charlie5 DNA MER1_type 2354 2520 -92 310 292 78 62 chr3 13586767 13586998 -213937580 + MIR SINE MIR 18 247 -15 2378 86 0 7 chr3 13587392 13587693 -213936885 + AluSg SINE Alu 1 299 -11 206 362 0 0 chr3 13588270 13588328 -213936250 - MER5A DNA MER1_type -69 120 63 * 230 247 13 52 chr3 13588302 13588379 -213936199 + MER5B DNA MER1_type 102 175 -3 444 293 79 6 chr3 13589772 13589936 -213934642 - MIR SINE MIR -16 246 71 564 233 30 8 chr3 13590051 13590184 -213934394 - FLAM_C SINE Alu -5 138 3 1445 143 0 9 chr3 13590781 13590997 -213933581 - AluSg/x SINE Alu -20 292 79 185 250 0 23 chr3 13591536 13591580 -213932998 + MIR SINE MIR 90 132 -76 316 291 107 0 chr3 13592234 13592337 -213932241 + MIR SINE MIR 56 169 -93 432 82 0 0 chr3 13592452 13592513 -213932065 + (ATG)n Simple_repeat Simple_repeat 1 61 0 257 304 135 30 chr3 13592795 13593025 -213931553 + L1ME LINE L1 5560 5813 -308 904 122 23 0 chr3 13593041 13593172 -213931406 + AluJo SINE Alu 1 134 -178 2432 96 3 0 chr3 13593365 13593677 -213930901 + AluSp SINE Alu 1 313 0 297 274 263 11 chr3 13595041 13595220 -213929358 - MIR SINE MIR -18 244 21 281 323 57 16 chr3 13595328 13595452 -213929126 - MIR SINE MIR -9 253 125 267 280 54 42 chr3 13597100 13597268 -213927310 + L2 LINE L2 2890 3059 -213 292 274 18 35 chr3 13598955 13599068 -213925510 + L2 LINE L2 2716 2826 -488 2294 52 29 0 chr3 13599099 13599399 -213925179 + AluY SINE Alu 1 308 0 207 288 243 0 chr3 13599408 13599519 -213925059 + L2 LINE L2 2922 3059 -213 258 32 0 0 chr3 13599703 13599734 -213924844 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 197 309 117 11 chr3 13600045 13600139 -213924439 - L2 LINE L2 -237 3035 2932 234 0 0 0 chr3 13600208 13600234 -213924344 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 211 284 149 14 chr3 13600316 13600390 -213924188 + MIR SINE MIR 11 94 -168 25 0 0 0 chr3 13601468 13601493 -213923085 + GC_rich Low_complexity Low_complexity 1 25 0 603 272 136 0 chr3 13602400 13602591 -213921987 - MLT1K LTR MaLR -239 349 133 304 265 53 69 chr3 13602591 13602780 -213921798 + MER20B DNA MER1_type 1 186 -597 309 214 36 71 chr3 13605113 13605225 -213919353 - MER103 DNA DNA -50 116 9 2364 94 0 0 chr3 13605809 13606108 -213918470 + AluY SINE Alu 1 299 -12 808 156 0 0 chr3 13608090 13608199 -213916379 + FLAM_C SINE Alu 9 117 -26 379 291 60 15 chr3 13611456 13611590 -213912988 + MIR3 SINE MIR 44 183 -25 880 172 156 98 chr3 13611693 13611897 -213912681 - MER2 DNA MER2_type 0 345 114 1534 184 124 10 chr3 13611897 13612283 -213912295 - Tigger2a DNA MER2_type -4 430 1 880 172 156 98 chr3 13612283 13612404 -213912174 - MER2 DNA MER2_type -231 114 1 320 260 57 51 chr3 13612449 13612687 -213911891 - MLT1K LTR MaLR -149 466 198 302 275 99 47 chr3 13612724 13612895 -213911683 + MIR SINE MIR 18 197 -65 683 208 8 0 chr3 13612897 13613022 -213911556 + FLAM_C SINE Alu 2 127 -16 305 55 0 96 chr3 13613027 13613100 -213911478 + (TGGA)n Simple_repeat Simple_repeat 3 68 0 2067 74 0 49 chr3 13614751 13615035 -213909543 + AluSq SINE Alu 1 270 -43 2421 66 10 13 chr3 13617422 13617724 -213906854 + AluSp SINE Alu 1 301 -12 245 362 53 32 chr3 13618022 13618210 -213906368 + MIR SINE MIR 4 195 -67 1937 116 47 4 chr3 13619343 13619618 -213904960 - AluSg SINE Alu -1 309 23 1545 148 168 0 chr3 13619818 13620074 -213904504 + AluJb SINE Alu 1 299 -13 187 269 19 163 chr3 13621123 13621258 -213903320 - MER5A DNA MER1_type -1 188 78 1957 132 35 14 chr3 13621258 13621547 -213903031 - AluSx SINE Alu -17 295 1 187 269 19 163 chr3 13621547 13621571 -213903007 - MER5A DNA MER1_type -111 78 52 456 270 109 17 chr3 13621876 13622050 -213902528 - MIR SINE MIR 0 262 73 26 30 0 0 chr3 13622300 13622333 -213902245 + GC_rich Low_complexity Low_complexity 1 33 0 223 186 0 34 chr3 13622415 13622474 -213902104 + (CCG)n Simple_repeat Simple_repeat 2 58 0 189 107 0 0 chr3 13624787 13624815 -213899763 + (TTTTC)n Simple_repeat Simple_repeat 5 32 0 * 245 109 22 0 chr3 13624810 13624856 -213899722 + CT-rich Low_complexity Low_complexity 2 48 0 201 318 16 0 chr3 13624947 13625010 -213899568 - L2 LINE L2 -3 3310 3247 1510 229 129 139 chr3 13625011 13625606 -213898972 - L2 LINE L2 -1 3312 2713 2620 77 0 0 chr3 13625606 13625917 -213898661 + AluY SINE Alu 1 311 0 1510 229 129 139 chr3 13625917 13626157 -213898421 - L2 LINE L2 -600 2713 2472 746 183 43 32 chr3 13626157 13626343 -213898235 + AluJo SINE Alu 121 308 -4 1510 229 129 139 chr3 13626343 13626473 -213898105 - L2 LINE L2 -841 2472 2342 1613 192 0 42 chr3 13626473 13626786 -213897792 - AluJo SINE Alu -12 300 1 1510 229 129 139 chr3 13626786 13627178 -213897400 - L2 LINE L2 -971 2342 1799 2506 38 3 7 chr3 13627178 13627468 -213897110 - AluY SINE Alu -22 289 1 1510 229 129 139 chr3 13627468 13627518 -213897060 - L2 LINE L2 -1514 1799 1750 2113 111 27 24 chr3 13627526 13627824 -213896754 + AluSq SINE Alu 1 299 -14 2584 57 0 7 chr3 13627827 13628128 -213896450 + AluY SINE Alu 1 299 -12 265 307 40 62 chr3 13628128 13628278 -213896300 + MIR SINE MIR 47 192 -70 383 249 93 78 chr3 13628278 13628311 -213896267 + MIR SINE MIR 2 33 -229 2005 141 0 10 chr3 13628311 13628609 -213895969 + AluJo SINE Alu 1 295 -17 383 249 93 78 chr3 13628609 13628832 -213895746 + MIR SINE MIR 33 262 0 638 224 0 7 chr3 13629676 13629819 -213894759 - FLAM_C SINE Alu 0 143 2 2478 82 3 0 chr3 13629916 13630220 -213894358 - AluSx SINE Alu -7 305 1 406 35 0 0 chr3 13630436 13630493 -213894085 - AluY SINE Alu -7 305 249 715 233 86 65 chr3 13630564 13630796 -213893782 - MIR SINE MIR -25 237 1 413 188 178 10 chr3 13631432 13631533 -213893045 + L2 LINE L2 3195 3312 -1 655 201 82 0 chr3 13631605 13631764 -213892814 - MIR SINE MIR -1 261 90 1075 124 162 5 chr3 13632162 13632347 -213892231 + AluJb SINE Alu 85 298 -14 407 174 14 0 chr3 13633331 13633400 -213891178 - AluS SINE Alu -229 74 5 721 93 0 0 chr3 13633411 13633508 -213891070 - AluSg/x SINE Alu -17 292 196 2407 95 0 0 chr3 13633521 13633815 -213890763 - AluSg SINE Alu -16 294 1 10078 108 12 35 chr3 13633815 13634114 -213890464 - Tigger1 DNA MER2_type -823 1595 1291 2216 121 3 0 chr3 13634114 13634419 -213890159 - AluSg1 SINE Alu -3 306 1 10078 108 12 35 chr3 13634419 13635232 -213889346 - Tigger1 DNA MER2_type -1127 1291 461 2902 16 0 3 chr3 13635232 13635548 -213889030 - AluYb8 SINE Alu -3 315 1 10078 108 12 35 chr3 13635548 13635577 -213889001 - Tigger1 DNA MER2_type -1957 461 433 802 150 0 15 chr3 13635577 13635710 -213888868 - FLAM_C SINE Alu -2 131 1 10078 108 12 35 chr3 13635710 13636199 -213888379 - Tigger1 DNA MER2_type -1985 433 1 200 182 0 0 chr3 13636279 13636312 -213888266 + GA-rich Low_complexity Low_complexity 3 35 0 1993 114 14 14 chr3 13636333 13636646 -213887932 + AluSx SINE Alu 1 312 0 2228 121 0 10 chr3 13636830 13637135 -213887443 - AluSx SINE Alu -10 302 1 1800 150 21 0 chr3 13637161 13637441 -213887137 - AluJo SINE Alu -26 286 1 1211 248 128 20 chr3 13637944 13638307 -213886271 + L1ME3A LINE L1 5572 5985 -185 2457 82 0 0 chr3 13638307 13638601 -213885977 + AluY SINE Alu 1 294 -17 1211 248 128 20 chr3 13638601 13638644 -213885934 + L1ME3A LINE L1 5985 6022 -148 1826 154 20 30 chr3 13638738 13639036 -213885542 + AluJb SINE Alu 1 295 -17 535 265 47 41 chr3 13639053 13639260 -213885318 + L1MC4a LINE L1 5706 5915 -253 254 325 8 16 chr3 13639624 13639750 -213884828 + L1ME4a LINE L1 5603 5727 -394 245 229 36 24 chr3 13639751 13639834 -213884744 + GA-rich Low_complexity Low_complexity 1 84 0 349 316 75 8 chr3 13639867 13640000 -213884578 + L1ME4a LINE L1 5777 5918 -203 856 264 53 24 chr3 13640022 13640268 -213884310 - MIR SINE MIR 0 262 10 195 42 0 0 chr3 13640567 13640591 -213883987 + (CTTG)n Simple_repeat Simple_repeat 2 25 0 2059 144 16 0 chr3 13640598 13640903 -213883675 - AluSq SINE Alu -3 310 1 877 267 18 14 chr3 13641198 13641475 -213883103 + L2 LINE L2 2430 2707 -607 1003 155 202 19 chr3 13641486 13641693 -213882885 + AluSg1 SINE Alu 1 247 -57 1496 135 0 5 chr3 13641693 13641908 -213882670 + AluJo SINE Alu 85 298 -14 239 227 177 35 chr3 13641929 13642070 -213882508 + L2 LINE L2 2751 2911 -403 594 329 156 18 chr3 13642499 13643237 -213881341 + L2 LINE L2 2040 2879 -435 568 296 137 17 chr3 13643302 13643500 -213881078 - MIR SINE MIR 0 262 31 2365 108 0 3 chr3 13643500 13643805 -213880773 - AluSx SINE Alu -8 304 1 568 296 137 17 chr3 13643805 13643839 -213880739 - MIR SINE MIR -231 31 2 216 191 64 0 chr3 13643887 13643934 -213880644 - L2 LINE L2 0 3272 3223 2247 116 7 3 chr3 13643978 13644279 -213880299 + AluSq SINE Alu 1 302 -11 1395 284 89 5 chr3 13644545 13645154 -213879424 + L1MC4a LINE L1 5260 5919 -1889 910 194 6 0 chr3 13645158 13645328 -213879250 + MLT1F1 LTR MaLR 5 175 -392 1437 164 32 147 chr3 13645328 13645425 -213879153 + L1MB8 LINE L1 4675 4782 -1364 1651 182 36 26 chr3 13645425 13645733 -213878845 + AluJo SINE Alu 1 311 -1 1437 164 32 147 chr3 13645733 13645760 -213878818 + L1MB8 LINE L1 4782 4810 -1336 2328 82 3 14 chr3 13645760 13646053 -213878525 - AluSg SINE Alu -19 291 2 1437 164 32 147 chr3 13646053 13646302 -213878276 + L1MB8 LINE L1 4810 4989 -1157 2148 135 0 0 chr3 13646302 13646598 -213877980 + AluSx SINE Alu 1 296 -16 1437 164 32 147 chr3 13646598 13646684 -213877894 + L1MB8 LINE L1 4989 5083 -1063 2894 165 9 55 chr3 13646684 13646816 -213877762 + L1MB8 LINE L1 5561 5697 -481 2240 123 0 0 chr3 13646816 13647116 -213877462 + AluSx SINE Alu 1 300 -12 2894 165 9 55 chr3 13647116 13647339 -213877239 + L1MB8 LINE L1 5697 5929 -249 2055 143 7 7 chr3 13647339 13647639 -213876939 + AluJo SINE Alu 3 302 -10 2894 165 9 55 chr3 13647639 13647920 -213876658 + L1MB8 LINE L1 5929 6169 -9 855 195 42 83 chr3 13647982 13648032 -213876546 + MLT1F1 LTR MaLR 313 364 -203 2549 66 3 0 chr3 13648032 13648337 -213876241 + AluY SINE Alu 1 306 -5 855 195 42 83 chr3 13648337 13648527 -213876051 + MLT1F1 LTR MaLR 364 543 -24 1946 155 30 3 chr3 13648542 13648838 -213875740 - AluJb SINE Alu -8 304 1 243 81 0 0 chr3 13648838 13648875 -213875703 + MLT1F1 LTR MaLR 530 566 -1 24 32 0 0 chr3 13649088 13649119 -213875459 + AT_rich Low_complexity Low_complexity 1 31 0 2131 130 3 0 chr3 13649158 13649473 -213875105 + AluSx SINE Alu 1 312 0 521 265 51 95 chr3 13649612 13649906 -213874672 + L2 LINE L2 2981 3261 -11 385 301 16 38 chr3 13649933 13650116 -213874462 + GA-rich Low_complexity Low_complexity 2 180 0 733 163 23 0 chr3 13650212 13650341 -213874237 + AluJo/FLAM SINE Alu 2 133 -169 418 96 0 10 chr3 13650341 13650498 -213874080 + AluSx SINE Alu 44 247 -62 1170 204 23 9 chr3 13650498 13650543 -213874035 + AluJo SINE Alu 85 128 -184 258 32 0 0 chr3 13650543 13650574 -213874004 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 1170 204 23 9 chr3 13650574 13650748 -213873830 + AluJo SINE Alu 128 307 -5 2455 96 0 3 chr3 13650846 13651159 -213873419 + AluSx SINE Alu 1 312 0 248 288 123 0 chr3 13651264 13651337 -213873241 + L2 LINE L2 3229 3310 -3 348 211 150 54 chr3 13651361 13651508 -213873070 + MIR3 SINE MIR 36 196 -12 472 307 104 25 chr3 13651600 13651805 -213872773 - MIR SINE MIR 0 262 34 2063 155 0 0 chr3 13651805 13652102 -213872476 - AluJo SINE Alu -15 297 1 472 307 104 25 chr3 13652102 13652137 -213872441 - MIR SINE MIR -228 34 3 247 276 21 22 chr3 13652303 13652464 -213872114 + MIR SINE MIR 26 250 -12 2125 130 0 0 chr3 13652592 13652909 -213871669 - AluJb SINE Alu 0 312 1 652 254 27 22 chr3 13652916 13653101 -213871477 + MIR SINE MIR 29 214 -48 1484 266 133 38 chr3 13653446 13653980 -213870598 + MLT1K LTR MaLR 4 588 0 2404 83 0 13 chr3 13654217 13654517 -213870061 + AluSq SINE Alu 1 296 -17 943 129 0 14 chr3 13654696 13654835 -213869743 - AluJo SINE Alu -175 137 1 193 381 48 8 chr3 13654869 13654995 -213869583 - MIR SINE MIR -55 153 23 418 220 73 84 chr3 13655137 13655328 -213869250 + MIR3 SINE MIR 16 204 -4 702 324 139 19 chr3 13655597 13656079 -213868499 + MARNA DNA Mariner 34 573 -13 386 282 81 24 chr3 13656591 13656715 -213867863 - MIR SINE MIR -59 149 19 237 252 0 73 chr3 13657489 13657640 -213866938 + G-rich Low_complexity Low_complexity 1 140 0 21 89 0 0 chr3 13658411 13658467 -213866111 + GC_rich Low_complexity Low_complexity 1 56 0 23 86 0 0 chr3 13658657 13658715 -213865863 + GC_rich Low_complexity Low_complexity 1 58 0 287 301 0 0 chr3 13659189 13659282 -213865296 + L2 LINE L2 3211 3303 -10 240 224 69 13 chr3 13659415 13659510 -213865068 + MIR SINE MIR 49 145 -63 847 187 0 0 chr3 13659629 13659784 -213864794 + FRAM SINE Alu 1 155 -11 211 294 42 42 chr3 13660184 13660303 -213864275 - MIR3 SINE MIR 0 208 90 420 224 27 102 chr3 13660352 13660499 -213864079 - L2 LINE L2 0 3272 3137 258 32 0 0 chr3 13660885 13660916 -213863662 + (TC)n Simple_repeat Simple_repeat 2 32 0 369 0 0 0 chr3 13660918 13660959 -213863619 + (CA)n Simple_repeat Simple_repeat 1 41 0 740 262 87 36 chr3 13660970 13661245 -213863333 + MLT1K LTR MaLR 138 426 -162 2153 102 0 0 chr3 13661245 13661620 -213862958 + AluSx SINE Alu 1 311 -1 599 222 54 11 chr3 13661620 13661805 -213862773 + MLT1K LTR MaLR 379 571 -17 1984 122 20 0 chr3 13661898 13662384 -213862194 + AluSq SINE Alu 1 313 0 437 318 79 9 chr3 13662416 13662630 -213861948 + MIR SINE MIR 33 261 -1 945 221 61 35 chr3 13662966 13663049 -213861529 - MIR SINE MIR -21 241 162 2055 158 39 16 chr3 13663049 13663430 -213861148 + MLT1B LTR MaLR 1 390 0 945 221 61 35 chr3 13663430 13663577 -213861001 - MIR SINE MIR -100 162 5 2005 116 13 16 chr3 13663598 13663908 -213860670 - AluSx SINE Alu -3 309 1 466 270 209 23 chr3 13663951 13664166 -213860412 + MIR SINE MIR 6 260 -2 5390 36 8 159 chr3 13664177 13665200 -213859378 + SVA Other Other 1 868 -518 2027 128 0 13 chr3 13665458 13665763 -213858815 + AluSx SINE Alu 1 301 -11 977 196 10 10 chr3 13665764 13665958 -213858620 - L1PB4 LINE L1 -14 6142 5949 2300 61 0 10 chr3 13666588 13666885 -213857693 - AluY SINE Alu -17 294 1 757 165 0 0 chr3 13666895 13667016 -213857562 - FLAM_C SINE Alu -22 121 1 462 65 0 0 chr3 13667209 13667271 -213857307 + (GA)n Simple_repeat Simple_repeat 1 62 0 874 141 0 15 chr3 13667419 13667554 -213857024 - FLAM_A SINE Alu 0 133 1 541 80 91 11 chr3 13667817 13667905 -213856673 + MLT1B LTR MaLR 238 332 -58 1080 125 11 11 chr3 13667905 13668081 -213856497 + AluY SINE Alu 136 311 0 329 134 119 15 chr3 13668088 13668155 -213856423 + MLT1B LTR MaLR 317 390 0 392 256 115 39 chr3 13668179 13668335 -213856243 - L2 LINE L2 -10 3303 3136 203 266 31 62 chr3 13668376 13668440 -213856138 + MIR SINE MIR 85 146 -62 23 0 0 0 chr3 13668496 13668519 -213856059 + AT_rich Low_complexity Low_complexity 1 23 0 1034 170 0 11 chr3 13668534 13668716 -213855862 - AluJb SINE Alu -11 301 122 580 274 17 45 chr3 13669001 13669122 -213855456 - L1MDa LINE L1 -3343 3197 3074 1562 171 0 63 chr3 13669122 13669455 -213855123 + AluJo SINE Alu 1 312 0 580 274 17 45 chr3 13669455 13669621 -213854957 - L1MDa LINE L1 -3466 3074 2918 538 229 12 54 chr3 13669609 13669775 -213854803 + L1ME2 LINE L1 5996 6154 -10 * 265 282 53 0 chr3 13670303 13670434 -213854144 - L1MDa LINE L1 -3959 2581 2444 2426 46 0 33 chr3 13670690 13670996 -213853582 - AluY SINE Alu -15 296 1 796 230 0 0 chr3 13671071 13671223 -213853355 + FRAM SINE Alu 1 152 -14 4635 137 37 18 chr3 13671401 13672220 -213852358 - L1MB4 LINE L1 -10 6170 5337 2026 103 31 0 chr3 13672222 13672512 -213852066 + AluSx SINE Alu 1 299 -13 1734 217 5 8 chr3 13672536 13672927 -213851651 - L1MB4 LINE L1 -940 5206 4817 1105 126 12 0 chr3 13672929 13673096 -213851482 - AluSg/x SINE Alu -13 297 129 661 190 41 8 chr3 13673251 13673372 -213851206 - FLAM_C SINE Alu -17 126 2 3603 194 53 52 chr3 13673564 13674274 -213850304 - L1ME1 LINE L1 -5 6161 5449 9946 41 73 5 chr3 13674274 13675589 -213848989 + SVA Other Other 1 1402 0 3603 194 53 52 chr3 13675589 13675804 -213848774 - L1ME1 LINE L1 -717 5449 5236 672 103 62 0 chr3 13675807 13675925 -213848653 - LTR49 LTR ERV1 -3 592 486 580 208 10 0 chr3 13675931 13676027 -213848551 + LTR49-int LTR ERV1 1 97 -6234 2016 134 0 7 chr3 13676028 13676335 -213848243 - AluSx SINE Alu -7 305 1 1914 154 77 100 chr3 13676337 13676805 -213847773 + LTR49-int LTR ERV1 734 1190 -5141 336 257 0 14 chr3 13676832 13676902 -213847676 + tRNA-Glu-GAG tRNA tRNA 7 75 0 549 115 67 5 chr3 13676956 13677060 -213847518 + LTR49-int LTR ERV1 1290 1934 -2946 2122 98 11 0 chr3 13677155 13677442 -213847136 + AluY SINE Alu 10 299 -12 3852 157 13 51 chr3 13677477 13677762 -213846816 + LTR49-int LTR ERV1 1372 1666 -4665 2153 90 0 7 chr3 13677762 13678051 -213846527 + AluSg1 SINE Alu 5 291 -18 3852 157 13 51 chr3 13678051 13678510 -213846068 + LTR49-int LTR ERV1 1666 2088 -4243 3878 128 10 38 chr3 13678516 13679125 -213845453 - LTR26 LTR ERV1 -11 592 1 438 331 66 36 chr3 13679127 13679432 -213845146 - HUERS-P1 LTR ERV1 -4 6259 5946 335 286 81 49 chr3 13679509 13679694 -213844884 - HERV30 LTR ERV1 -488 4466 4276 1808 176 0 0 chr3 13679856 13680168 -213844410 - AluJo SINE Alu 0 312 1 2222 115 0 0 chr3 13680999 13681311 -213843267 + AluSx SINE Alu 1 312 0 1900 131 37 0 chr3 13681430 13681727 -213842851 + AluSx SINE Alu 1 308 -4 639 283 45 82 chr3 13681957 13682228 -213842350 - HERV30 LTR ERV1 -517 7603 7323 1660 160 3 13 chr3 13682228 13682528 -213842050 + AluJb SINE Alu 1 297 -15 639 283 45 82 chr3 13682528 13682739 -213841839 - HERV30 LTR ERV1 -797 7323 5010 2231 81 10 0 chr3 13682739 13683034 -213841544 - AluSg SINE Alu -12 298 1 447 343 25 47 chr3 13683038 13683402 -213841176 - HERV30 LTR ERV1 -2093 5029 4674 2167 82 0 3 chr3 13683501 13683792 -213840786 + AluSg SINE Alu 1 290 -20 1626 338 42 44 chr3 13684133 13684168 -213840410 - HERV30 LTR ERV1 -2813 4756 4722 1708 188 0 0 chr3 13684168 13684461 -213840117 + AluJo SINE Alu 3 295 -17 1626 338 42 44 chr3 13684461 13685883 -213838695 - HERV30 LTR ERV1 -2847 4722 2832 411 100 0 0 chr3 13685955 13686015 -213838563 + Alu SINE Alu 249 308 -4 793 340 47 50 chr3 13686082 13686723 -213837855 - HERV30 LTR ERV1 -5568 1554 916 401 286 31 8 chr3 13686906 13687074 -213837504 - HERV30 LTR ERV1 -5067 1611 1448 * 1721 258 47 59 chr3 13687051 13687663 -213836915 - HERV30 LTR ERV1 -5188 1075 471 2375 68 0 7 chr3 13687780 13688090 -213836488 + AluY SINE Alu 1 308 -3 310 364 45 13 chr3 13688102 13688256 -213836322 - HERV30 LTR ERV1 -6080 183 25 3415 136 30 76 chr3 13688280 13688912 -213835666 - LTR26 LTR ERV1 0 603 1 371 88 29 88 chr3 13688914 13688936 -213835642 + LTR49-int LTR ERV1 2084 2106 -4225 2015 143 74 36 chr3 13688936 13689124 -213835454 - LTR23 LTR ERV1 0 437 258 2183 90 3 13 chr3 13689124 13689434 -213835144 + AluSx SINE Alu 1 307 -5 2015 143 74 36 chr3 13689434 13689666 -213834912 - LTR23 LTR ERV1 -179 258 1 371 88 29 88 chr3 13689666 13689711 -213834867 + LTR49-int LTR ERV1 2106 2147 -4184 2063 121 3 33 chr3 13689716 13689835 -213834743 - L1PB3 LINE L1 -7 6147 6026 363 23 0 0 chr3 13689835 13689879 -213834699 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 2218 68 11 0 chr3 13689879 13690160 -213834418 - AluSp SINE Alu -29 284 1 2063 121 3 33 chr3 13690160 13690369 -213834209 - L1PB3 LINE L1 -126 6028 5828 1874 127 37 3 chr3 13690369 13690668 -213833910 - AluSx SINE Alu -3 309 1 3991 166 13 22 chr3 13690671 13690780 -213833798 - L1PB3 LINE L1 -464 5690 5582 2073 112 3 7 chr3 13690780 13691084 -213833494 + AluSx SINE Alu 4 306 -6 3991 166 13 22 chr3 13691084 13691531 -213833047 - L1PB3 LINE L1 -572 5582 5132 1932 119 0 14 chr3 13691531 13691841 -213832737 - AluSx SINE Alu 0 306 1 3991 166 13 22 chr3 13691841 13692504 -213832074 - L1PB3 LINE L1 -1022 5132 4484 2163 69 13 7 chr3 13692504 13692810 -213831768 - AluY SINE Alu -3 308 1 674 173 0 0 chr3 13692815 13692925 -213831653 - FLAM_C SINE Alu -15 128 19 740 147 0 0 chr3 13692926 13693035 -213831543 + MER50 LTR ERV1 70 178 -556 1894 136 17 0 chr3 13693040 13693334 -213831244 + AluSp SINE Alu 1 299 -14 345 132 38 0 chr3 13693342 13693395 -213831183 + LTR49 LTR ERV1 535 589 -6 1313 197 19 104 chr3 13693397 13693450 -213831128 - L1M4 LINE L1 -904 5242 5186 2322 66 7 3 chr3 13693450 13693751 -213830827 - AluY SINE Alu -9 302 1 1313 197 19 104 chr3 13693751 13693848 -213830730 - L1M4 LINE L1 -960 5186 5082 1858 150 10 16 chr3 13693848 13694162 -213830416 - AluJo SINE Alu 0 312 1 1313 197 19 104 chr3 13694162 13694442 -213830136 - L1M4 LINE L1 -1064 5082 4848 776 216 13 0 chr3 13694429 13694582 -213829996 + L1MB8 LINE L1 5425 5579 -587 * 1754 176 6 6 chr3 13694582 13694894 -213829684 + AluJb SINE Alu 1 312 0 389 114 48 59 chr3 13694913 13694976 -213829602 + L1MB8 LINE L1 5552 5616 -549 2570 132 50 68 chr3 13694976 13695475 -213829103 + LTR2B LTR ERV1 1 490 0 389 114 48 59 chr3 13695475 13695507 -213829071 + L1MB8 LINE L1 5616 5647 -518 496 236 49 0 chr3 13695708 13695831 -213828747 + L1MB8 LINE L1 5635 5763 -401 1667 112 4 45 chr3 13695831 13696098 -213828480 + LTR8 LTR ERV1 1 256 -435 7304 44 7 99 chr3 13696098 13697245 -213827333 + SVA Other Other 7 1047 -339 473 196 50 33 chr3 13697291 13697441 -213827137 + L1MC5 LINE L1 7786 7995 0 2731 91 16 139 chr3 13697462 13697783 -213826795 + LTR8 LTR ERV1 240 475 -216 1705 178 20 0 chr3 13697783 13698086 -213826492 + AluJb SINE Alu 1 309 -3 2731 91 16 139 chr3 13698086 13698280 -213826298 + LTR8 LTR ERV1 475 691 0 614 204 69 61 chr3 13698282 13698567 -213826011 - LTR48B LTR ERV1 -10 729 382 273 167 45 15 chr3 13698630 13698696 -213825882 - LTR48B LTR ERV1 -449 195 128 268 274 104 19 chr3 13698668 13698774 -213825804 - MER39 LTR ERV1 -582 125 11 * 1102 170 131 0 chr3 13698807 13699013 -213825565 - MER34C LTR ERV1 -352 233 1 2278 157 9 14 chr3 13699015 13699443 -213825135 + L1MB8 LINE L1 5752 6177 -1 2209 88 3 3 chr3 13699453 13699749 -213824829 + AluSx SINE Alu 1 296 -16 617 215 28 0 chr3 13699749 13699893 -213824685 - L1M4 LINE L1 -1291 4855 4708 242 28 0 28 chr3 13699893 13699929 -213824649 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 990 157 20 108 chr3 13699930 13700044 -213824534 - AluJo SINE Alu -80 232 150 1683 101 0 4 chr3 13700044 13700272 -213824306 - AluSc SINE Alu -82 227 1 990 157 20 108 chr3 13700272 13700406 -213824172 - AluJo SINE Alu -162 150 6 1083 202 72 19 chr3 13700411 13700718 -213823860 - L1M4 LINE L1 -1440 4706 4384 1623 158 3 30 chr3 13700724 13700778 -213823800 - AluJb SINE Alu -21 291 237 2190 158 12 6 chr3 13700778 13701119 -213823459 + MER61A LTR ERV1 1 343 0 1623 158 3 30 chr3 13701119 13701362 -213823216 - AluJb SINE Alu -75 237 2 2089 68 64 20 chr3 13701415 13701711 -213822867 - AluY SINE Alu -2 309 1 2059 111 0 55 chr3 13701726 13702051 -213822527 - AluSg SINE Alu -1 309 3 2250 91 7 3 chr3 13702088 13702396 -213822182 - AluY SINE Alu -2 309 1 1400 220 58 47 chr3 13702407 13702796 -213821782 - L1M4 LINE L1 -1807 4339 3943 2213 89 0 13 chr3 13702796 13703100 -213821478 - AluSc SINE Alu -9 300 1 1400 220 58 47 chr3 13703100 13703160 -213821418 - L1M4 LINE L1 -2203 3943 3885 1446 204 72 135 chr3 13703160 13703885 -213820693 - LTR8A LTR ERV1 0 727 49 976 153 10 61 chr3 13703887 13704083 -213820495 - LTR8 LTR ERV1 -503 188 3 5048 70 14 43 chr3 13704083 13704663 -213819915 - LTR8 LTR ERV1 0 691 134 2169 29 39 59 chr3 13704663 13704970 -213819608 + AluY SINE Alu 1 301 -10 5048 70 14 43 chr3 13704970 13705101 -213819477 - LTR8 LTR ERV1 -557 134 1 519 138 0 12 chr3 13705163 13705243 -213819335 - AluJ/FLAM SINE Alu -225 87 9 552 238 67 54 chr3 13705254 13705477 -213819101 - L1M4 LINE L1 -2368 3778 3553 22 35 0 0 chr3 13705493 13705522 -213819056 + GC_rich Low_complexity Low_complexity 1 29 0 2008 103 3 0 chr3 13705927 13706217 -213818361 + AluSx SINE Alu 1 291 -21 1812 157 0 0 chr3 13706232 13706531 -213818047 + AluJo SINE Alu 1 299 -13 1909 115 41 0 chr3 13706795 13707090 -213817488 + AluSq SINE Alu 1 307 -6 180 0 0 0 chr3 13707090 13707110 -213817468 + (TA)n Simple_repeat Simple_repeat 2 21 0 2141 65 25 0 chr3 13708198 13708498 -213816080 - AluSp SINE Alu 0 307 1 694 263 28 49 chr3 13708975 13709019 -213815559 - L1M4 LINE L1 -2585 3561 3518 2319 78 0 10 chr3 13709019 13709328 -213815250 - AluY SINE Alu -5 306 1 694 263 28 49 chr3 13709328 13709368 -213815210 - L1M4 LINE L1 -2628 3518 3479 1626 158 39 7 chr3 13709368 13709653 -213814925 + AluJb SINE Alu 1 294 -18 694 263 28 49 chr3 13709653 13709852 -213814726 - L1M4 LINE L1 -2667 3479 3283 236 185 62 0 chr3 13709857 13709922 -213814656 - L1MB5 LINE L1 -6 6168 6100 1799 180 59 71 chr3 13709922 13710361 -213814217 - LTR8A LTR ERV1 0 727 294 291 260 68 0 chr3 13710359 13710432 -213814146 - LTR8 LTR ERV1 -613 78 1 * 795 191 48 33 chr3 13710435 13710645 -213813933 - L1MB5 LINE L1 -74 6100 5888 807 173 0 33 chr3 13710645 13710795 -213813783 - AluJb SINE Alu -82 230 86 860 145 0 0 chr3 13710816 13710940 -213813638 - FLAM_C SINE Alu -8 125 2 23 0 0 0 chr3 13710949 13710972 -213813606 + AT_rich Low_complexity Low_complexity 1 23 0 393 284 36 4 chr3 13711072 13711252 -213813326 - L1MEd LINE L1 -1231 1259 983 22 0 0 0 chr3 13711257 13711279 -213813299 + AT_rich Low_complexity Low_complexity 1 22 0 1892 133 7 20 chr3 13711286 13711422 -213813156 + AluSx SINE Alu 1 137 -175 2236 102 3 0 chr3 13711422 13711725 -213812853 + AluSp SINE Alu 2 305 -8 1892 133 7 20 chr3 13711725 13711879 -213812699 + AluSx SINE Alu 137 289 -23 249 57 0 0 chr3 13711879 13711914 -213812664 + (CATA)n Simple_repeat Simple_repeat 2 36 0 786 161 0 0 chr3 13711923 13712041 -213812537 - FLAM_C SINE Alu -15 118 1 1930 141 0 3 chr3 13712106 13712397 -213812181 - AluSx SINE Alu -20 292 3 991 193 0 6 chr3 13712414 13712585 -213811993 - FAM SINE Alu -1 174 5 783 173 0 67 chr3 13712640 13712790 -213811788 + Tigger2a DNA MER2_type 1 140 -294 2116 104 20 0 chr3 13712790 13713088 -213811490 + AluY SINE Alu 1 304 -7 2079 108 6 25 chr3 13713088 13713404 -213811174 + AluSg SINE Alu 1 310 0 1979 112 37 27 chr3 13713404 13713700 -213810878 - THE1B LTR MaLR -65 299 1 918 41 0 0 chr3 13713700 13713821 -213810757 + Tigger2a DNA MER2_type 162 282 -162 1680 168 0 23 chr3 13713823 13714127 -213810451 + AluJo SINE Alu 3 299 -13 292 243 14 14 chr3 13714127 13714197 -213810381 + Tigger2a DNA MER2_type 375 444 0 2169 110 0 3 chr3 13714284 13714585 -213809993 - AluSq SINE Alu -13 300 1 446 297 198 4 chr3 13714967 13715199 -213809379 - MLT1L LTR MaLR -123 492 216 1690 141 31 10 chr3 13715446 13715736 -213808842 - AluJo SINE Alu -12 300 5 2416 53 0 13 chr3 13715775 13716078 -213808500 - AluY SINE Alu -12 299 1 1906 144 0 0 chr3 13716251 13716542 -213808036 - AluSx SINE Alu -21 291 1 617 212 74 20 chr3 13716575 13716629 -213807949 - MIR3 SINE MIR -55 153 103 2230 132 72 46 chr3 13716629 13717046 -213807532 + MSTA LTR MaLR 1 428 0 617 212 74 20 chr3 13717046 13717192 -213807386 - MIR3 SINE MIR -105 103 3 1627 240 45 35 chr3 13718009 13718235 -213806343 + Zaphod DNA AcHobo 1 234 -3797 1751 180 3 0 chr3 13718235 13718546 -213806032 + AluJb SINE Alu 1 312 0 1627 240 45 35 chr3 13718546 13718744 -213805834 + Zaphod DNA AcHobo 234 429 -3602 1362 116 55 116 chr3 13718746 13718965 -213805613 - L1PA15 LINE L1 -4 6161 5963 1888 103 82 10 chr3 13718965 13719256 -213805322 - AluSx SINE Alu 0 312 1 1362 116 55 116 chr3 13719256 13719328 -213805250 - L1PA15 LINE L1 -202 5963 5888 1645 176 27 117 chr3 13719330 13719635 -213804943 + Zaphod DNA AcHobo 422 753 -3278 976 207 0 11 chr3 13719635 13719809 -213804769 + FAM SINE Alu 1 172 -3 1806 174 0 0 chr3 13719813 13720112 -213804466 + AluJo SINE Alu 1 299 -13 1645 176 27 117 chr3 13720112 13720397 -213804181 + Zaphod DNA AcHobo 756 963 -3068 777 202 82 16 chr3 13720411 13720654 -213803924 + Zaphod DNA AcHobo 3595 3853 -178 1948 147 0 3 chr3 13720655 13720962 -213803616 + AluSx SINE Alu 1 306 -6 433 252 55 0 chr3 13721039 13721166 -213803412 + L2 LINE L2 2919 3052 -261 413 58 0 0 chr3 13721294 13721346 -213803232 + L1MA7 LINE L1 5857 5908 -383 366 312 132 10 chr3 13721353 13721558 -213803020 + L2 LINE L2 3084 3313 0 528 227 63 48 chr3 13721622 13721829 -213802749 + L1MC5 LINE L1 7705 7914 -47 250 354 39 22 chr3 13721988 13722166 -213802412 - L2 LINE L2 -188 3084 2904 698 269 77 21 chr3 13722185 13722613 -213801965 - MLT1L LTR MaLR -42 573 89 297 307 13 33 chr3 13722701 13722851 -213801727 - L2 LINE L2 -575 2739 2593 743 288 5 5 chr3 13722856 13723061 -213801517 + LTR33 LTR ERVL 9 213 -308 3159 203 63 16 chr3 13723164 13723848 -213800730 + LTR28 LTR ERV1 1 716 -304 818 214 3 124 chr3 13723823 13724122 -213800456 + MER52A LTR ERV1 1208 1470 -285 * 343 219 81 31 chr3 13724134 13724265 -213800313 + MER52A LTR ERV1 587 635 -1 295 264 52 97 chr3 13724276 13724373 -213800205 + LTR33 LTR ERVL 374 464 -57 2166 89 0 0 chr3 13724373 13724698 -213799880 - AluSc SINE Alu 0 325 1 295 264 52 97 chr3 13724698 13724754 -213799824 + LTR33 LTR ERVL 464 521 0 1868 147 0 7 chr3 13724999 13725299 -213799279 + AluSx SINE Alu 1 298 -14 871 133 37 0 chr3 13725486 13725621 -213798957 - LTR23 LTR ERV1 0 437 298 1816 146 4 4 chr3 13725624 13725944 -213798634 - AluJb SINE Alu 0 320 1 1180 166 4 57 chr3 13725944 13726191 -213798387 - LTR23 LTR ERV1 -203 234 1 1353 195 37 104 chr3 13726191 13726683 -213797895 + MLT1C LTR MaLR 9 467 0 1246 181 116 32 chr3 13726837 13727114 -213797464 + AluJo SINE Alu 1 300 -12 1100 238 52 82 chr3 13727169 13727562 -213797016 - L1MC5 LINE L1 -99 7862 7492 1965 149 7 0 chr3 13727562 13727863 -213796715 - AluSx SINE Alu -9 303 1 1100 238 52 82 chr3 13727863 13728082 -213796496 - L1MC5 LINE L1 -469 7492 7268 457 202 12 0 chr3 13728265 13728349 -213796229 - AluS SINE Alu -222 90 6 538 199 160 6 chr3 13728354 13728510 -213796068 - L1MEc LINE L1 -3746 2469 2290 1870 172 60 109 chr3 13728545 13728912 -213795666 - L1ME2 LINE L1 -185 5979 5650 2237 110 7 0 chr3 13728912 13729222 -213795356 - AluSx SINE Alu 0 312 1 1870 172 60 109 chr3 13729222 13729442 -213795136 - L1ME2 LINE L1 -514 5650 5421 1329 152 119 30 chr3 13729470 13729545 -213795033 - AluJo SINE Alu -19 293 226 2092 189 41 41 chr3 13729545 13730031 -213794547 - MER66B LTR ERV1 0 486 1 1329 152 119 30 chr3 13730031 13730224 -213794354 - AluJo SINE Alu -86 226 1 342 0 0 0 chr3 13730226 13730264 -213794314 + (TA)n Simple_repeat Simple_repeat 1 38 0 1979 127 3 0 chr3 13730265 13730556 -213794022 - AluSx SINE Alu -20 292 1 364 304 44 13 chr3 13730582 13730740 -213793838 - L1MEc LINE L1 -4595 1801 1639 352 42 0 0 chr3 13730748 13730796 -213793782 - AluY SINE Alu 0 300 253 1504 168 0 25 chr3 13730796 13731076 -213793502 + AluJb SINE Alu 23 295 -17 697 229 44 84 chr3 13731078 13731267 -213793311 - L1ME3 LINE L1 -7 6155 5979 1927 133 0 25 chr3 13731267 13731582 -213792996 - AluSx SINE Alu -5 307 1 697 229 44 84 chr3 13731582 13731641 -213792937 - L1ME3 LINE L1 -183 5979 5919 593 122 28 37 chr3 13731687 13731794 -213792784 - L1MB8 LINE L1 -38 6140 6035 380 242 0 22 chr3 13731797 13731888 -213792690 - MLT1F LTR MaLR -407 135 47 2094 126 0 0 chr3 13732102 13732404 -213792174 - AluSx SINE Alu -10 302 1 2128 100 6 16 chr3 13732412 13732723 -213791855 - AluSp SINE Alu -4 309 2 480 200 139 133 chr3 13732764 13732830 -213791748 + MER5A DNA MER1_type 9 73 -116 1744 141 3 17 chr3 13732830 13733121 -213791457 + AluJo SINE Alu 1 287 -25 480 200 139 133 chr3 13733121 13733234 -213791344 + MER5A DNA MER1_type 73 189 0 426 207 24 0 chr3 13733264 13733346 -213791232 + FLAM SINE Alu 40 123 -20 202 239 0 0 chr3 13733409 13733455 -213791123 + A-rich Low_complexity Low_complexity 1 46 0 350 235 53 38 chr3 13733468 13733600 -213790978 + L1M4 LINE L1 4999 5132 -1014 327 262 50 21 chr3 13733638 13733779 -213790799 + L1M4 LINE L1 5103 5247 -899 4669 104 6 56 chr3 13733784 13734512 -213790066 - LTR8 LTR ERV1 0 691 1 27818 104 103 120 chr3 13734512 13735149 -213789429 - HUERS-P1 LTR ERV1 0 6263 5617 2316 75 0 0 chr3 13735149 13735443 -213789135 - AluY SINE Alu -17 294 1 27818 104 103 120 chr3 13735443 13735470 -213789108 - HUERS-P1 LTR ERV1 -646 5617 5591 1738 125 31 48 chr3 13735470 13735791 -213788787 + AluSx SINE Alu 1 316 0 27818 104 103 120 chr3 13735791 13736094 -213788484 - HUERS-P1 LTR ERV1 -672 5591 5284 2235 78 3 3 chr3 13736094 13736388 -213788190 - AluSp SINE Alu -18 295 2 27818 104 103 120 chr3 13736388 13736666 -213787912 - HUERS-P1 LTR ERV1 -979 5284 5003 1812 122 0 42 chr3 13736666 13736987 -213787591 - AluSx SINE Alu 0 315 7 27818 104 103 120 chr3 13736987 13737015 -213787563 - HUERS-P1 LTR ERV1 -1260 5003 4976 2009 104 13 13 chr3 13737015 13737324 -213787254 - AluSc SINE Alu 0 309 1 1031 54 0 8 chr3 13737330 13737460 -213787118 - AluY SINE Alu -85 226 98 27818 104 103 120 chr3 13737460 13737576 -213787002 - HUERS-P1 LTR ERV1 -1292 4971 4855 2111 80 0 0 chr3 13737576 13737851 -213786727 - AluSq SINE Alu -14 299 25 27818 104 103 120 chr3 13737851 13738266 -213786312 - HUERS-P1 LTR ERV1 -1408 4855 4435 2377 77 0 0 chr3 13738266 13738576 -213786002 + AluY SINE Alu 2 311 0 27818 104 103 120 chr3 13738576 13738617 -213785961 - HUERS-P1 LTR ERV1 -1828 4435 4395 690 180 262 0 chr3 13738617 13738789 -213785789 + AluJb SINE Alu 82 298 -14 27818 104 103 120 chr3 13738789 13738911 -213785667 - HUERS-P1 LTR ERV1 -1868 4395 4272 2090 121 0 0 chr3 13738911 13739208 -213785370 - AluSx SINE Alu -15 297 1 27818 104 103 120 chr3 13739208 13739300 -213785278 - HUERS-P1 LTR ERV1 -1991 4272 4180 2364 68 7 0 chr3 13739300 13739608 -213784970 - AluY SINE Alu 0 311 2 27818 104 103 120 chr3 13739608 13740288 -213784290 - HUERS-P1 LTR ERV1 -2083 4180 3490 2059 125 0 10 chr3 13740288 13740466 -213784112 - AluSx SINE Alu -1 311 136 2244 80 3 0 chr3 13740466 13740795 -213783783 - AluY SINE Alu 0 311 1 2059 125 0 10 chr3 13740795 13740929 -213783649 - AluSx SINE Alu -176 136 2 27818 104 103 120 chr3 13740929 13741129 -213783449 - HUERS-P1 LTR ERV1 -2773 3490 3288 2219 107 0 0 chr3 13741129 13741437 -213783141 + AluSx SINE Alu 1 308 -4 27818 104 103 120 chr3 13741437 13742915 -213781663 - HUERS-P1 LTR ERV1 -2975 3288 1787 1659 111 111 0 chr3 13742915 13743185 -213781393 - AluSx SINE Alu -12 300 1 27818 104 103 120 chr3 13743185 13743335 -213781243 - HUERS-P1 LTR ERV1 -4476 1787 1636 2235 96 0 0 chr3 13743335 13743637 -213780941 - AluSx SINE Alu -10 302 1 27818 104 103 120 chr3 13743637 13743940 -213780638 - HUERS-P1 LTR ERV1 -4627 1636 1329 441 0 0 0 chr3 13743940 13743989 -213780589 + (GA)n Simple_repeat Simple_repeat 2 50 0 27818 104 103 120 chr3 13743989 13744988 -213779590 - HUERS-P1 LTR ERV1 -4934 1329 177 2239 69 0 23 chr3 13744988 13745292 -213779286 + AluY SINE Alu 1 297 -14 27818 104 103 120 chr3 13745292 13745467 -213779111 - HUERS-P1 LTR ERV1 -6086 177 1 4113 101 17 124 chr3 13745467 13745533 -213779045 - LTR8 LTR ERV1 0 691 620 2126 83 4 0 chr3 13745533 13745810 -213778768 + AluSp SINE Alu 3 280 -33 2452 49 0 10 chr3 13745811 13746116 -213778462 + AluY SINE Alu 1 302 -9 4113 101 17 124 chr3 13746116 13746734 -213777844 - LTR8 LTR ERV1 -71 620 95 7174 58 3 0 chr3 13746734 13747804 -213776774 + L1PA6 LINE L1 5079 6151 -3 4113 101 17 124 chr3 13747804 13747890 -213776688 - LTR8 LTR ERV1 -596 95 1 643 246 27 0 chr3 13747896 13748083 -213776495 + L1ME LINE L1 5254 5445 -725 * 906 213 127 8 chr3 13748074 13748342 -213776236 + L1ME1 LINE L1 5863 6162 -4 1550 184 4 0 chr3 13748397 13748709 -213775869 + AluJb SINE Alu 9 321 0 297 241 125 0 chr3 13748764 13748876 -213775702 + L1ME LINE L1 5428 5553 -609 240 93 209 0 chr3 13748915 13748958 -213775620 - LTR54 LTR ERV1 0 510 459 1973 118 0 10 chr3 13748959 13749135 -213775443 - AluSx SINE Alu -3 309 136 2134 106 0 0 chr3 13749135 13749427 -213775151 - AluSq SINE Alu -21 292 1 1973 118 0 10 chr3 13749427 13749555 -213775023 - AluSx SINE Alu -176 136 8 1525 151 43 98 chr3 13749555 13749610 -213774968 - LTR54 LTR ERV1 -134 376 320 2240 77 0 26 chr3 13749610 13749921 -213774657 - AluY SINE Alu -8 303 1 1525 151 43 98 chr3 13749921 13749996 -213774582 - LTR54 LTR ERV1 -190 320 242 1987 126 0 40 chr3 13749996 13750321 -213774257 + AluSx SINE Alu 1 312 0 1525 151 43 98 chr3 13750321 13750568 -213774010 - LTR54 LTR ERV1 -268 242 18 1567 156 39 39 chr3 13750568 13750876 -213773702 - AluJb SINE Alu -4 308 1 1525 151 43 98 chr3 13750876 13750894 -213773684 - LTR54 LTR ERV1 -492 18 1 1795 154 0 7 chr3 13750969 13751274 -213773304 + AluJo SINE Alu 1 303 -9 687 211 54 70 chr3 13751486 13751799 -213772779 + L1MC5 LINE L1 7624 7931 -30 289 239 11 57 chr3 13751827 13751915 -213772663 + MIR SINE MIR 98 181 -81 2128 86 17 0 chr3 13751950 13752242 -213772336 - AluSg SINE Alu -13 297 1 2046 115 3 0 chr3 13752330 13752626 -213771952 - AluSx SINE Alu -15 297 1 333 271 12 12 chr3 13754134 13754219 -213770359 + MER5A DNA MER1_type 49 133 -56 2095 99 3 7 chr3 13754220 13754523 -213770055 - AluSx SINE Alu -10 302 1 1788 173 0 3 chr3 13754524 13754837 -213769741 - AluJo SINE Alu 0 312 1 442 106 91 0 chr3 13755032 13755098 -213769480 - HY1 scRNA scRNA -39 73 2 1909 118 3 20 chr3 13755109 13755267 -213769311 - AluSx SINE Alu -21 291 139 2181 94 0 3 chr3 13755267 13755564 -213769014 - AluSc SINE Alu -13 296 1 1909 118 3 20 chr3 13755564 13755701 -213768877 - AluSx SINE Alu -173 139 1 915 140 263 31 chr3 13755917 13756145 -213768433 + AluSg1 SINE Alu 13 293 -16 1256 117 277 9 chr3 13756158 13756389 -213768189 + AluSx SINE Alu 1 293 -9 2067 97 10 3 chr3 13756389 13756687 -213767891 + AluSx SINE Alu 1 300 -12 223 313 53 69 chr3 13757359 13757490 -213767088 + MIR3 SINE MIR 1 129 -79 480 239 22 45 chr3 13757567 13757701 -213766877 + MIR SINE MIR 8 138 -124 280 241 269 0 chr3 13758195 13758303 -213766275 + MER5A DNA MER1_type 53 189 0 1954 97 49 7 chr3 13758530 13758818 -213765760 + AluSx SINE Alu 1 300 -12 1735 154 14 0 chr3 13759031 13759324 -213765254 - AluSx SINE Alu -15 297 1 200 35 35 0 chr3 13759375 13759404 -213765174 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1358 195 87 14 chr3 13759534 13759811 -213764767 - AluJo SINE Alu -1 301 5 304 236 14 28 chr3 13759878 13759950 -213764628 - MER5A DNA MER1_type -87 102 32 399 240 98 44 chr3 13760054 13760154 -213764424 - MIR SINE MIR -6 256 163 2097 90 0 23 chr3 13760154 13760455 -213764123 - AluSg SINE Alu -16 294 1 399 240 98 44 chr3 13760455 13760592 -213763986 - MIR SINE MIR -99 163 9 358 302 62 27 chr3 13761174 13761320 -213763258 + MIR SINE MIR 11 162 -46 1343 154 15 133 chr3 13761514 13761852 -213762726 + AluJb SINE Alu 1 298 -4 2282 96 7 0 chr3 13762048 13762349 -213762229 - AluSx SINE Alu -9 303 1 2292 105 3 7 chr3 13762864 13763168 -213761410 - AluSx SINE Alu -9 303 1 1802 145 84 10 chr3 13763820 13764131 -213760447 - MER1B DNA MER1_type 0 339 6 2091 109 0 4 chr3 13764427 13764703 -213759875 + AluSq SINE Alu 16 290 -23 319 243 215 35 chr3 13765200 13765344 -213759234 + MIR SINE MIR 32 201 -61 389 273 45 9 chr3 13765370 13765480 -213759098 - L2 LINE L2 -8 3305 3192 214 254 0 0 chr3 13765553 13765608 -213758970 - MIR SINE MIR -118 144 90 522 228 103 0 chr3 13765920 13766065 -213758513 - Charlie2 DNA MER1_type -2587 195 36 2549 58 0 13 chr3 13766109 13766420 -213758158 - AluY SINE Alu -4 307 1 2170 87 7 0 chr3 13766421 13766696 -213757882 - AluSx SINE Alu -35 277 1 365 208 47 28 chr3 13766826 13766932 -213757646 - MER103 DNA DNA -9 157 50 3445 85 42 24 chr3 13767099 13767609 -213756969 + L1MA3 LINE L1 5737 6259 -46 2392 87 7 0 chr3 13767609 13767907 -213756671 + AluSg SINE Alu 1 300 -10 3445 85 42 24 chr3 13767907 13767950 -213756628 + L1MA3 LINE L1 6259 6300 -5 1269 173 32 22 chr3 13767971 13768249 -213756329 + L1PA16 LINE L1 5886 6166 0 248 217 47 47 chr3 13768286 13768327 -213756251 + Charlie5 DNA MER1_type 58 98 -2526 2448 65 13 3 chr3 13768327 13768634 -213755944 - AluY SINE Alu -1 310 1 248 217 47 47 chr3 13768634 13768698 -213755880 + Charlie5 DNA MER1_type 97 163 -2461 2047 143 10 0 chr3 13768733 13769040 -213755538 - AluSx SINE Alu -2 310 1 555 172 106 0 chr3 13769047 13769198 -213755380 + Charlie5 DNA MER1_type 2354 2520 -92 310 292 78 62 chr3 13770840 13771071 -213753507 + MIR SINE MIR 18 247 -15 2378 86 0 7 chr3 13771465 13771766 -213752812 + AluSg SINE Alu 1 299 -11 206 362 0 0 chr3 13772343 13772401 -213752177 - MER5A DNA MER1_type -69 120 63 * 230 247 13 52 chr3 13772375 13772452 -213752126 + MER5B DNA MER1_type 102 175 -3 444 293 79 6 chr3 13773845 13774009 -213750569 - MIR SINE MIR -16 246 71 564 233 30 8 chr3 13774124 13774257 -213750321 - FLAM_C SINE Alu -5 138 3 1445 143 0 9 chr3 13774854 13775070 -213749508 - AluSg/x SINE Alu -20 292 79 185 250 0 23 chr3 13775608 13775652 -213748926 + MIR SINE MIR 90 132 -76 316 291 107 0 chr3 13776306 13776409 -213748169 + MIR SINE MIR 56 169 -93 432 82 0 0 chr3 13776524 13776585 -213747993 + (ATG)n Simple_repeat Simple_repeat 1 61 0 257 304 135 30 chr3 13776867 13777097 -213747481 + L1ME LINE L1 5560 5813 -308 904 122 23 0 chr3 13777113 13777244 -213747334 + AluJo SINE Alu 1 134 -178 2432 96 3 0 chr3 13777437 13777749 -213746829 + AluSp SINE Alu 1 313 0 297 274 263 11 chr3 13779113 13779292 -213745286 - MIR SINE MIR -18 244 21 281 323 57 16 chr3 13779400 13779524 -213745054 - MIR SINE MIR -9 253 125 267 280 54 42 chr3 13781172 13781340 -213743238 + L2 LINE L2 2890 3059 -213 292 274 18 35 chr3 13783027 13783140 -213741438 + L2 LINE L2 2716 2826 -488 2294 52 29 0 chr3 13783171 13783471 -213741107 + AluY SINE Alu 1 308 0 207 288 243 0 chr3 13783480 13783591 -213740987 + L2 LINE L2 2922 3059 -213 258 32 0 0 chr3 13783775 13783806 -213740772 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 197 309 117 11 chr3 13784117 13784211 -213740367 - L2 LINE L2 -237 3035 2932 234 0 0 0 chr3 13784280 13784306 -213740272 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 211 284 149 14 chr3 13784388 13784462 -213740116 + MIR SINE MIR 11 94 -168 25 0 0 0 chr3 13785540 13785565 -213739013 + GC_rich Low_complexity Low_complexity 1 25 0 603 272 136 0 chr3 13786472 13786663 -213737915 - MLT1K LTR MaLR -239 349 133 304 265 53 69 chr3 13786663 13786852 -213737726 + MER20B DNA MER1_type 1 186 -597 309 214 36 71 chr3 13789185 13789297 -213735281 - MER103 DNA DNA -50 116 9 2364 94 0 0 chr3 13789881 13790180 -213734398 + AluY SINE Alu 1 299 -12 808 156 0 0 chr3 13792162 13792271 -213732307 + FLAM_C SINE Alu 9 117 -26 354 298 61 15 chr3 13795525 13795656 -213728922 + MIR3 SINE MIR 44 180 -28 358 250 0 44 chr3 13795887 13796023 -213728555 - AluSq/x SINE Alu -153 150 21 531 257 15 7 chr3 13796077 13796213 -213728365 - MER2 DNA MER2_type -208 137 1 625 280 48 48 chr3 13796317 13796567 -213728011 + MIR SINE MIR 8 257 -5 2367 88 0 0 chr3 13796618 13796903 -213727675 + AluSg1 SINE Alu 1 285 -24 231 36 0 0 chr3 13796903 13796931 -213727647 + (TA)n Simple_repeat Simple_repeat 2 29 0 425 318 79 28 chr3 13796950 13797202 -213727376 + L1MEc LINE L1 2133 2397 -3999 743 54 8 70 chr3 13797277 13797406 -213727172 - L1PA13 LINE L1 -1 6162 6042 1085 235 30 0 chr3 13797732 13797966 -213726612 + MIR SINE MIR 22 262 0 327 353 41 8 chr3 13797999 13798121 -213726457 - L2 LINE L2 -28 3244 3119 198 349 94 7 chr3 13798486 13798635 -213725943 - L2 LINE L2 -240 3032 2871 234 236 14 42 chr3 13798741 13798813 -213725765 + MIR SINE MIR 77 146 -116 2078 103 7 27 chr3 13798839 13799131 -213725447 - AluSx SINE Alu -26 286 1 245 301 0 0 chr3 13799134 13799207 -213725371 + MIR SINE MIR 137 209 -53 1762 178 3 16 chr3 13799418 13799721 -213724857 - AluJo SINE Alu -13 299 1 270 250 24 113 chr3 13799755 13799879 -213724699 + L2 LINE L2 2935 3047 -225 290 342 0 0 chr3 13799936 13800012 -213724566 + L2 LINE L2 3238 3313 0 2292 87 3 7 chr3 13800107 13800396 -213724182 + AluSg SINE Alu 12 299 -11 1712 163 54 0 chr3 13800455 13800749 -213723829 - AluJo SINE Alu -2 310 1 951 160 96 0 chr3 13800817 13801004 -213723574 + MER3 DNA MER1_type 1 205 -4 253 309 228 0 chr3 13801040 13801163 -213723415 + MIR3 SINE MIR 31 181 -27 192 325 172 23 chr3 13801337 13801622 -213722956 + L2 LINE L2 2738 3072 -200 486 0 0 0 chr3 13801625 13801679 -213722899 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 2017 117 7 7 chr3 13801679 13801962 -213722616 - AluSq SINE Alu -30 283 1 2281 98 0 52 chr3 13801985 13802311 -213722267 + AluSx SINE Alu 1 309 -3 678 147 28 0 chr3 13802351 13802460 -213722118 + FLAM_A SINE Alu 23 134 -8 2349 267 53 14 chr3 13802462 13803042 -213721536 - L2 LINE L2 -1633 1681 1066 1733 166 16 26 chr3 13803042 13803349 -213721229 + AluJo SINE Alu 5 308 -4 2349 267 53 14 chr3 13803349 13803484 -213721094 - L2 LINE L2 -2248 1066 938 2238 93 0 42 chr3 13803497 13803810 -213720768 - AluSx SINE Alu -12 300 1 257 164 179 30 chr3 13803917 13803984 -213720594 - MIR SINE MIR -115 93 17 396 292 41 10 chr3 13804453 13804601 -213719977 - MIR SINE MIR -63 145 45 309 320 27 0 chr3 13805565 13805899 -213718679 + (TGGA)n Simple_repeat Simple_repeat 1 343 0 200 135 0 58 chr3 13805938 13805990 -213718588 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 2453 53 0 7 chr3 13806083 13806391 -213718187 + AluY SINE Alu 1 306 0 358 320 17 22 chr3 13806395 13806573 -213718005 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 * 372 336 0 0 chr3 13806549 13806686 -213717892 + (TAGA)n Simple_repeat Simple_repeat 4 140 0 799 267 30 13 chr3 13806695 13806927 -213717651 + MIR SINE MIR 9 244 -18 243 0 0 0 chr3 13806933 13806960 -213717618 + (A)n Simple_repeat Simple_repeat 1 27 0 338 240 113 53 chr3 13808706 13808766 -213715812 + MIR SINE MIR 87 142 -120 2428 71 7 3 chr3 13808766 13809061 -213715517 - AluSp SINE Alu -17 296 1 338 240 113 53 chr3 13809061 13809150 -213715428 + MIR SINE MIR 142 245 -17 415 236 286 0 chr3 13809152 13809292 -213715286 + MER5A DNA MER1_type 4 183 -6 271 339 11 23 chr3 13809551 13809728 -213714850 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 365 264 0 9 chr3 13809958 13810182 -213714396 + (TGGA)n Simple_repeat Simple_repeat 1 221 0 781 164 0 0 chr3 13811010 13811126 -213713452 + AluJo/FLAM SINE Alu 1 116 -186 2276 119 3 0 chr3 13811126 13811428 -213713150 - AluSx SINE Alu -9 303 1 38 0 0 0 chr3 13811429 13811467 -213713111 + AT_rich Low_complexity Low_complexity 1 38 0 * 852 170 50 0 chr3 13811439 13811598 -213712980 - MER2 DNA MER2_type -178 167 1 649 277 47 47 chr3 13811699 13811952 -213712626 + MIR SINE MIR 5 257 -5 2367 88 0 0 chr3 13812003 13812288 -213712290 + AluSg1 SINE Alu 1 285 -24 231 36 0 0 chr3 13812288 13812316 -213712262 + (TA)n Simple_repeat Simple_repeat 2 29 0 425 318 79 28 chr3 13812335 13812587 -213711991 + L1MEc LINE L1 2133 2397 -3999 743 54 8 70 chr3 13812662 13812791 -213711787 - L1PA13 LINE L1 -1 6162 6042 1085 235 30 0 chr3 13813117 13813351 -213711227 + MIR SINE MIR 22 262 0 327 353 41 8 chr3 13813384 13813506 -213711072 - L2 LINE L2 -28 3244 3119 198 349 94 7 chr3 13813871 13814020 -213710558 - L2 LINE L2 -240 3032 2871 382 197 7 132 chr3 13814126 13814201 -213710377 + MIR SINE MIR 77 125 -137 2262 102 6 25 chr3 13814201 13814516 -213710062 - AluSx SINE Alu -3 309 1 382 197 7 132 chr3 13814516 13814592 -213709986 + MIR SINE MIR 125 209 -53 1793 175 3 16 chr3 13814803 13815106 -213709472 - AluJo SINE Alu -13 299 1 270 250 24 113 chr3 13815140 13815264 -213709314 + L2 LINE L2 2935 3047 -225 290 342 0 0 chr3 13815321 13815397 -213709181 + L2 LINE L2 3238 3313 0 2440 93 0 0 chr3 13815481 13815782 -213708796 + AluSx SINE Alu 1 301 -11 1712 163 54 0 chr3 13815841 13816135 -213708443 - AluJo SINE Alu -2 310 1 951 160 96 0 chr3 13816203 13816390 -213708188 + MER3 DNA MER1_type 1 205 -4 253 309 228 0 chr3 13816426 13816549 -213708029 + MIR3 SINE MIR 31 181 -27 294 309 196 33 chr3 13816723 13817011 -213707567 + L2 LINE L2 2738 2978 -335 450 0 0 0 chr3 13817011 13817061 -213707517 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 2246 102 0 0 chr3 13817061 13817344 -213707234 - AluSq SINE Alu -30 283 1 294 309 196 33 chr3 13817344 13817536 -213707042 + L2 LINE L2 2977 3304 -9 2299 125 0 0 chr3 13817540 13817844 -213706734 + AluSx SINE Alu 1 304 -8 398 300 0 0 chr3 13817867 13817957 -213706621 + L1MC4 LINE L1 6614 6703 -1339 392 286 0 11 chr3 13817917 13818008 -213706570 - L1MC4 LINE L1 -1339 6703 6614 * 387 267 0 11 chr3 13817964 13818054 -213706524 + L1MC4 LINE L1 6615 6703 -1339 * 2195 189 35 36 chr3 13818354 13818874 -213705704 - LTR40a LTR ERVL 0 519 1 305 221 39 39 chr3 13819093 13819197 -213705381 + MIR SINE MIR 81 184 -78 939 311 128 28 chr3 13819656 13820473 -213704105 - L2 LINE L2 -99 3214 2480 690 187 0 22 chr3 13820473 13820607 -213703971 + AluJo/FLAM SINE Alu 3 133 -169 2556 83 3 0 chr3 13820607 13820919 -213703659 + AluSp SINE Alu 1 313 0 939 311 128 28 chr3 13820919 13820930 -213703648 - L2 LINE L2 -832 2481 2236 203 364 0 43 chr3 13821014 13821201 -213703377 + C-rich Low_complexity Low_complexity 1 179 0 * 209 343 6 40 chr3 13821066 13821241 -213703337 + CT-rich Low_complexity Low_complexity 2 170 0 496 278 163 47 chr3 13821252 13821701 -213702877 - L2 LINE L2 -1104 2210 1710 672 244 6 18 chr3 13822521 13822689 -213701889 - MIR SINE MIR 0 262 97 212 273 167 0 chr3 13822982 13823048 -213701530 - MIR SINE MIR -117 145 69 211 301 0 58 chr3 13823490 13823646 -213700932 + C-rich Low_complexity Low_complexity 3 149 0 273 197 0 0 chr3 13824012 13824078 -213700500 + (CCG)n Simple_repeat Simple_repeat 3 68 0 22 0 0 0 chr3 13824358 13824380 -213700198 + GC_rich Low_complexity Low_complexity 1 22 0 440 271 167 21 chr3 13825639 13825920 -213698658 - L2 LINE L2 0 3272 2951 212 323 173 19 chr3 13826039 13826299 -213698279 - L2 LINE L2 -512 2802 2503 491 263 78 39 chr3 13827163 13827276 -213697302 - MIR SINE MIR -40 222 96 1928 146 36 3 chr3 13827276 13827578 -213697000 - AluJb SINE Alu 0 312 1 491 263 78 39 chr3 13827578 13827669 -213696909 - MIR SINE MIR -166 96 10 2484 77 13 0 chr3 13828270 13828570 -213696008 - AluSc SINE Alu -5 304 1 858 206 126 23 chr3 13829603 13829817 -213694761 - MIR SINE MIR -2 260 25 221 333 111 15 chr3 13830148 13830283 -213694295 - MIR SINE MIR -67 195 48 593 249 134 9 chr3 13830454 13830671 -213693907 + MIR SINE MIR 18 261 -1 653 255 74 35 chr3 13830967 13831198 -213693380 + MIR SINE MIR 11 250 -12 203 162 0 0 chr3 13832050 13832087 -213692491 + GA-rich Low_complexity Low_complexity 2 38 0 183 280 40 0 chr3 13833381 13833431 -213691147 - L2 LINE L2 0 3272 3221 1532 61 0 0 chr3 13833739 13833920 -213690658 + AluY SINE Alu 120 300 -11 184 261 43 43 chr3 13833950 13834019 -213690559 - MIR SINE MIR -124 84 16 503 248 45 13 chr3 13834912 13835080 -213689498 - MIR3 SINE MIR -48 160 25 393 247 17 0 chr3 13836859 13836968 -213687610 - MIR3 SINE MIR -12 196 84 453 258 97 46 chr3 13840439 13840656 -213683922 - MIR SINE MIR -33 229 2 2466 62 0 3 chr3 13841092 13841384 -213683194 + AluSc SINE Alu 1 291 -18 1075 124 162 5 chr3 13842905 13843090 -213681488 - AluJb SINE Alu -14 298 85 655 201 82 0 chr3 13843488 13843647 -213680931 + MIR SINE MIR 90 261 -1 413 188 178 10 chr3 13843719 13843820 -213680758 - L2 LINE L2 -1 3312 3195 715 233 86 65 chr3 13844456 13844688 -213679890 + MIR SINE MIR 1 237 -25 406 35 0 0 chr3 13844759 13844816 -213679762 + AluY SINE Alu 249 305 -7 2178 114 10 0 chr3 13845032 13845329 -213679249 + AluSx SINE Alu 1 300 -12 2128 111 27 24 chr3 13845333 13845631 -213678947 + AluSq SINE Alu 1 299 -14 2584 57 0 7 chr3 13845635 13845936 -213678642 + AluY SINE Alu 1 299 -12 265 307 40 62 chr3 13845936 13846086 -213678492 + MIR SINE MIR 47 192 -70 383 249 93 78 chr3 13846086 13846119 -213678459 + MIR SINE MIR 2 33 -229 2005 141 0 10 chr3 13846119 13846417 -213678161 + AluJo SINE Alu 1 295 -17 383 249 93 78 chr3 13846417 13846640 -213677938 + MIR SINE MIR 33 262 0 638 224 0 7 chr3 13847485 13847628 -213676950 - FLAM_C SINE Alu 0 143 2 2349 90 10 3 chr3 13847725 13848025 -213676553 - AluSc SINE Alu -7 302 1 451 302 43 0 chr3 13848089 13848228 -213676350 + MIR SINE MIR 26 170 -92 2343 88 10 0 chr3 13848299 13848596 -213675982 + AluSg SINE Alu 1 300 -10 1283 173 32 22 chr3 13848660 13848938 -213675640 + L1PA16 LINE L1 5886 6166 0 248 217 47 47 chr3 13848975 13849016 -213675562 + Charlie5 DNA MER1_type 58 98 -2526 2448 65 13 3 chr3 13849016 13849323 -213675255 - AluY SINE Alu -1 310 1 248 217 47 47 chr3 13849323 13849387 -213675191 + Charlie5 DNA MER1_type 97 163 -2461 2012 143 10 3 chr3 13849422 13849730 -213674848 - AluSx SINE Alu -2 310 1 555 172 106 0 chr3 13849737 13849888 -213674690 + Charlie5 DNA MER1_type 2354 2520 -92 310 292 78 62 chr3 13851530 13851761 -213672817 + MIR SINE MIR 18 247 -15 2378 86 0 7 chr3 13852155 13852456 -213672122 + AluSg SINE Alu 1 299 -11 206 362 0 0 chr3 13853033 13853091 -213671487 - MER5A DNA MER1_type -69 120 63 * 230 247 13 52 chr3 13853065 13853142 -213671436 + MER5B DNA MER1_type 102 175 -3 444 293 79 6 chr3 13854535 13854699 -213669879 - MIR SINE MIR -16 246 71 564 233 30 8 chr3 13854814 13854947 -213669631 - FLAM_C SINE Alu -5 138 3 1445 143 0 9 chr3 13855544 13855760 -213668818 - AluSg/x SINE Alu -20 292 79 185 250 0 23 chr3 13856298 13856342 -213668236 + MIR SINE MIR 90 132 -76 316 291 107 0 chr3 13856996 13857099 -213667479 + MIR SINE MIR 56 169 -93 432 82 0 0 chr3 13857214 13857275 -213667303 + (ATG)n Simple_repeat Simple_repeat 1 61 0 257 304 135 30 chr3 13857557 13857787 -213666791 + L1ME LINE L1 5560 5813 -308 904 122 23 0 chr3 13857803 13857934 -213666644 + AluJo SINE Alu 1 134 -178 2432 96 3 0 chr3 13858127 13858439 -213666139 + AluSp SINE Alu 1 313 0 296 313 78 9 chr3 13859867 13859982 -213664596 - MIR SINE MIR -119 143 21 281 323 57 16 chr3 13860090 13860214 -213664364 - MIR SINE MIR -9 253 125 267 280 54 42 chr3 13861862 13862030 -213662548 + L2 LINE L2 2890 3059 -213 292 274 18 35 chr3 13863717 13863830 -213660748 + L2 LINE L2 2716 2826 -488 2264 55 29 0 chr3 13863861 13864161 -213660417 + AluY SINE Alu 1 308 0 207 288 243 0 chr3 13864170 13864281 -213660297 + L2 LINE L2 2922 3059 -213 258 32 0 0 chr3 13864465 13864496 -213660082 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 197 309 117 11 chr3 13864807 13864901 -213659677 - L2 LINE L2 -237 3035 2932 234 0 0 0 chr3 13864970 13864996 -213659582 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 211 284 149 14 chr3 13865078 13865152 -213659426 + MIR SINE MIR 11 94 -168 25 0 0 0 chr3 13866231 13866256 -213658322 + GC_rich Low_complexity Low_complexity 1 25 0 579 278 136 0 chr3 13867163 13867354 -213657224 - MLT1K LTR MaLR -239 349 133 304 265 53 69 chr3 13867354 13867543 -213657035 + MER20B DNA MER1_type 1 186 -597 309 214 36 71 chr3 13869876 13869988 -213654590 - MER103 DNA DNA -50 116 9 2364 94 0 0 chr3 13870572 13870871 -213653707 + AluY SINE Alu 1 299 -12 808 156 0 0 chr3 13872855 13872964 -213651614 + FLAM_C SINE Alu 9 117 -26 2350 110 0 0 chr3 13873967 13874275 -213650303 + AluSx SINE Alu 1 308 -4 5577 166 45 12 chr3 13874275 13875310 -213649268 - MER57-int LTR ERV1 -4063 3474 2405 673 146 19 19 chr3 13875312 13875470 -213649108 + CT-rich Low_complexity Low_complexity 1 158 0 2066 122 29 52 chr3 13875470 13875753 -213648825 - MER57-int LTR ERV1 -4355 1908 1635 1800 111 111 0 chr3 13875753 13876023 -213648555 - AluSx SINE Alu -12 300 1 2066 122 29 52 chr3 13876023 13876124 -213648454 - MER57-int LTR ERV1 -4628 1635 1533 302 0 0 0 chr3 13876139 13876173 -213648405 - MER57-int LTR ERV1 -4695 1568 1535 2205 87 45 7 chr3 13876173 13876462 -213648116 - AluSx SINE Alu -12 300 1 263 250 269 0 chr3 13876689 13876797 -213647781 - MER5A DNA MER1_type 0 189 53 441 239 22 45 chr3 13877291 13877425 -213647153 - MIR SINE MIR -124 138 8 196 329 52 58 chr3 13877478 13877633 -213646945 - MIR3 SINE MIR -54 154 1 2226 97 10 3 chr3 13878305 13878603 -213645975 - AluSx SINE Alu -12 300 1 1187 126 277 0 chr3 13878603 13878834 -213645744 - AluSx SINE Alu -7 295 1 1039 162 241 9 chr3 13878847 13879075 -213645503 - AluSg1 SINE Alu -16 293 13 2060 118 3 20 chr3 13879291 13879428 -213645150 + AluSx SINE Alu 1 139 -173 2337 94 0 3 chr3 13879428 13879725 -213644853 + AluSc SINE Alu 1 296 -13 2060 118 3 20 chr3 13879725 13879883 -213644695 + AluSx SINE Alu 139 291 -21 420 106 91 0 chr3 13879894 13879960 -213644618 + HY1 scRNA scRNA 2 73 -39 1956 173 0 3 chr3 13880155 13880468 -213644110 + AluJo SINE Alu 1 312 0 2245 104 3 7 chr3 13880469 13880776 -213643802 + AluSx SINE Alu 1 306 -6 293 263 13 13 chr3 13880781 13880857 -213643721 - MER5A DNA MER1_type -65 124 49 2196 115 3 0 chr3 13882365 13882661 -213641917 + AluSx SINE Alu 1 297 -15 2284 86 17 0 chr3 13882749 13883041 -213641537 + AluSg SINE Alu 1 297 -13 278 239 11 57 chr3 13883076 13883164 -213641414 - MIR SINE MIR -81 181 98 632 224 51 67 chr3 13883192 13883505 -213641073 - L1MC5 LINE L1 -30 7931 7624 1931 157 0 7 chr3 13883717 13884022 -213640556 - AluJo SINE Alu -9 303 1 1440 148 42 101 chr3 13884097 13884115 -213640463 + LTR54 LTR ERV1 1 19 -491 1721 156 39 39 chr3 13884115 13884423 -213640155 + AluJb SINE Alu 1 308 -4 1440 148 42 101 chr3 13884423 13884670 -213639908 + LTR54 LTR ERV1 19 279 -231 2149 126 0 40 chr3 13884670 13884995 -213639583 - AluSx SINE Alu 0 312 1 1440 148 42 101 chr3 13884995 13885070 -213639508 + LTR54 LTR ERV1 279 357 -153 2399 77 0 26 chr3 13885070 13885381 -213639197 + AluY SINE Alu 1 303 -8 1440 148 42 101 chr3 13885381 13885436 -213639142 + LTR54 LTR ERV1 357 376 -134 2128 120 0 10 chr3 13885436 13885564 -213639014 + AluSx SINE Alu 8 136 -176 2249 113 0 0 chr3 13885564 13885856 -213638722 + AluSq SINE Alu 1 292 -21 2128 120 0 10 chr3 13885856 13886035 -213638543 + AluSx SINE Alu 136 312 0 282 247 120 10 chr3 13886075 13886227 -213638351 - L1MC/D LINE L1 -609 5553 5428 1700 184 4 0 chr3 13886282 13886588 -213637990 - AluJo SINE Alu 0 315 9 856 213 127 8 chr3 13886643 13886911 -213637667 - L1ME1 LINE L1 -4 6162 5863 622 246 27 0 chr3 13886902 13887089 -213637489 - L1MC/D LINE L1 -725 5445 5254 * 3894 101 17 124 chr3 13887095 13887181 -213637397 + LTR8 LTR ERV1 1 95 -596 6806 58 6 0 chr3 13887181 13888251 -213636327 - L1PA6 LINE L1 -3 6151 5079 3894 101 17 124 chr3 13888251 13888869 -213635709 + LTR8 LTR ERV1 95 778 87 2611 49 0 10 chr3 13888869 13889174 -213635404 - AluY SINE Alu -9 302 1 2273 83 4 0 chr3 13889175 13889452 -213635126 - AluSp SINE Alu -33 280 3 3894 101 17 124 chr3 13889452 13889518 -213635060 + LTR8 LTR ERV1 620 691 0 8752 107 73 27 chr3 13889518 13889693 -213634885 + HUERS-P1 LTR ERV1 1 166 -6097 2397 69 0 23 chr3 13889693 13889997 -213634581 - AluY SINE Alu -14 297 1 8752 107 73 27 chr3 13889997 13890996 -213633582 + HUERS-P1 LTR ERV1 166 1259 -5004 495 0 0 0 chr3 13890996 13891051 -213633527 + (TC)n Simple_repeat Simple_repeat 2 56 0 8752 107 73 27 chr3 13891051 13891353 -213633225 + HUERS-P1 LTR ERV1 1259 1546 -4717 2345 105 0 0 chr3 13891354 13891658 -213632920 + AluSx SINE Alu 1 304 -8 336 238 0 0 chr3 13891666 13891729 -213632849 + L1MC4 LINE L1 6641 6703 -1339 * 369 326 0 0 chr3 13891700 13891789 -213632789 - L1MC4 LINE L1 -1340 6702 6614 * 387 277 40 0 chr3 13891748 13891849 -213632729 + L1MC4 LINE L1 6615 6719 -1323 311 152 76 15 chr3 13891823 13891889 -213632689 + L1MCa LINE L1 1995 2064 -4362 * 2195 189 35 36 chr3 13892190 13892710 -213631868 - LTR40a LTR ERVL 0 519 1 305 221 39 39 chr3 13892929 13893033 -213631545 + MIR SINE MIR 81 184 -78 939 311 128 28 chr3 13893492 13894309 -213630269 - L2 LINE L2 -99 3214 2480 690 187 0 22 chr3 13894309 13894443 -213630135 + AluJo/FLAM SINE Alu 3 133 -169 2556 83 3 0 chr3 13894443 13894755 -213629823 + AluSp SINE Alu 1 313 0 939 311 128 28 chr3 13894755 13894766 -213629812 - L2 LINE L2 -832 2481 2236 203 364 0 43 chr3 13894850 13895037 -213629541 + C-rich Low_complexity Low_complexity 1 179 0 * 209 343 6 40 chr3 13894902 13895077 -213629501 + CT-rich Low_complexity Low_complexity 2 170 0 496 278 163 47 chr3 13895088 13895537 -213629041 - L2 LINE L2 -1104 2210 1710 655 250 6 18 chr3 13896357 13896525 -213628053 - MIR SINE MIR 0 262 97 212 273 167 0 chr3 13896818 13896884 -213627694 - MIR SINE MIR -117 145 69 211 301 0 58 chr3 13897326 13897482 -213627096 + C-rich Low_complexity Low_complexity 3 149 0 273 197 0 0 chr3 13897848 13897914 -213626664 + (CCG)n Simple_repeat Simple_repeat 3 68 0 22 0 0 0 chr3 13898194 13898216 -213626362 + GC_rich Low_complexity Low_complexity 1 22 0 440 271 167 21 chr3 13899475 13899756 -213624822 - L2 LINE L2 0 3272 2951 212 323 173 19 chr3 13899875 13900135 -213624443 - L2 LINE L2 -512 2802 2503 491 263 78 39 chr3 13900999 13901112 -213623466 - MIR SINE MIR -40 222 96 1928 146 36 3 chr3 13901112 13901414 -213623164 - AluJb SINE Alu 0 312 1 491 263 78 39 chr3 13901414 13901505 -213623073 - MIR SINE MIR -166 96 10 2475 77 13 0 chr3 13902106 13902405 -213622173 - AluSc SINE Alu -6 303 1 858 206 126 23 chr3 13903438 13903652 -213620926 - MIR SINE MIR -2 260 25 221 333 111 15 chr3 13903983 13904118 -213620460 - MIR SINE MIR -67 195 48 593 249 134 9 chr3 13904289 13904506 -213620072 + MIR SINE MIR 18 261 -1 653 255 74 35 chr3 13904802 13905033 -213619545 + MIR SINE MIR 11 250 -12 203 162 0 0 chr3 13905885 13905922 -213618656 + GA-rich Low_complexity Low_complexity 2 38 0 183 280 40 0 chr3 13907216 13907266 -213617312 - L2 LINE L2 0 3272 3221 1532 61 0 0 chr3 13907574 13907755 -213616823 + AluY SINE Alu 120 300 -11 184 261 43 43 chr3 13907785 13907854 -213616724 - MIR SINE MIR -124 84 16 503 248 45 13 chr3 13908747 13908915 -213615663 - MIR3 SINE MIR -48 160 25 397 247 17 0 chr3 13910694 13910803 -213613775 - MIR3 SINE MIR -12 196 84 462 313 65 14 chr3 13914274 13914491 -213610087 - MIR SINE MIR -33 229 2 2329 62 0 3 chr3 13914927 13915219 -213609359 + AluSc SINE Alu 1 291 -18 998 124 162 5 chr3 13916740 13916925 -213607653 - AluJb SINE Alu -14 298 85 646 201 82 0 chr3 13917323 13917482 -213607096 + MIR SINE MIR 90 261 -1 414 188 178 10 chr3 13917554 13917655 -213606923 - L2 LINE L2 -1 3312 3195 716 233 86 65 chr3 13918291 13918523 -213606055 + MIR SINE MIR 1 237 -25 428 35 0 0 chr3 13918594 13918651 -213605927 + AluY SINE Alu 249 305 -7 2051 114 10 0 chr3 13918867 13919164 -213605414 + AluSx SINE Alu 1 300 -12 1998 111 27 24 chr3 13919168 13919466 -213605112 + AluSq SINE Alu 1 299 -14 2437 57 0 7 chr3 13919469 13919770 -213604808 + AluY SINE Alu 1 299 -12 270 326 75 14 chr3 13919770 13919917 -213604661 + MIR SINE MIR 47 202 -60 359 245 93 78 chr3 13919920 13919953 -213604625 + MIR SINE MIR 2 33 -229 1880 141 0 10 chr3 13919953 13920251 -213604327 + AluJo SINE Alu 1 295 -17 359 245 93 78 chr3 13920251 13920474 -213604104 + MIR SINE MIR 33 262 0 696 224 0 7 chr3 13921318 13921461 -213603117 - FLAM_C SINE Alu 0 143 2 2211 90 10 3 chr3 13921558 13921858 -213602720 - AluSc SINE Alu -7 302 1 455 318 47 0 chr3 13921922 13922070 -213602508 + MIR SINE MIR 26 180 -82 2004 108 52 0 chr3 13922133 13922419 -213602159 + AluSx SINE Alu 1 301 -11 216 293 13 0 chr3 13924109 13924184 -213600394 + (TA)n Simple_repeat Simple_repeat 1 76 0 725 143 110 0 chr3 13924199 13924353 -213600225 - MIR SINE MIR -2 260 90 852 335 82 17 chr3 13924360 13924730 -213599848 + L2 LINE L2 2295 2717 -597 2155 121 0 0 chr3 13924730 13925028 -213599550 - AluSx SINE Alu -14 298 1 852 335 82 17 chr3 13925028 13925233 -213599345 + L2 LINE L2 2717 2907 -407 2305 88 0 10 chr3 13926059 13926366 -213598212 + AluSg1 SINE Alu 1 304 -5 1056 235 81 46 chr3 13926990 13927424 -213597154 + L2 LINE L2 2845 3293 -20 181 194 16 16 chr3 13927446 13927508 -213597070 + GA-rich Low_complexity Low_complexity 1 62 0 541 293 87 5 chr3 13928112 13928320 -213596258 - MIR SINE MIR -18 244 20 259 248 25 93 chr3 13928325 13928456 -213596122 + L1ME4a LINE L1 5971 6091 -30 1819 115 38 54 chr3 13928456 13928770 -213595808 - AluSq SINE Alu -4 309 1 259 248 25 93 chr3 13928770 13928799 -213595779 + L1ME4a LINE L1 6091 6120 -1 228 266 16 0 chr3 13928894 13928958 -213595620 - MIR SINE MIR -119 143 79 1021 152 11 43 chr3 13929344 13929528 -213595050 + FAM SINE Alu 1 42 -7 2111 120 0 0 chr3 13929809 13930100 -213594478 + AluSq SINE Alu 1 291 -22 328 259 46 56 chr3 13930108 13930216 -213594362 + L2 LINE L2 3117 3223 -49 736 221 7 0 chr3 13930236 13930381 -213594197 + MIR SINE MIR 105 250 -12 2040 108 3 54 chr3 13930400 13930716 -213593862 - AluSp SINE Alu -12 301 2 1636 83 4 18 chr3 13930720 13930949 -213593629 - AluSp SINE Alu 0 313 88 269 261 15 0 chr3 13930973 13931038 -213593540 + MIR SINE MIR 58 123 -85 2191 80 28 0 chr3 13931061 13931347 -213593231 + AluSx SINE Alu 5 298 -14 325 299 31 0 chr3 13931695 13931792 -213592786 - MIR SINE MIR -74 188 89 1310 217 173 8 chr3 13932121 13932485 -213592093 + MLT1K LTR MaLR 122 545 -43 250 247 68 14 chr3 13932517 13932590 -213591988 + MER5A DNA MER1_type 31 107 -82 298 289 240 0 chr3 13932603 13932707 -213591871 + MER5A DNA MER1_type 61 189 0 573 279 118 60 chr3 13932885 13933465 -213591113 + L2 LINE L2 2612 3227 -45 224 220 44 11 chr3 13933955 13934046 -213590532 + (TTCA)n Simple_repeat Simple_repeat 1 94 0 180 77 0 0 chr3 13934109 13934135 -213590443 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 227 250 0 0 chr3 13935312 13935376 -213589202 + (CA)n Simple_repeat Simple_repeat 2 65 0 278 290 93 0 chr3 13936260 13936367 -213588211 - MIR SINE MIR -119 143 27 2000 139 13 3 chr3 13937083 13937433 -213587145 - AluJo SINE Alu 0 353 1 313 313 90 0 chr3 13937505 13937639 -213586939 + MIR SINE MIR 86 231 -31 2297 87 7 3 chr3 13937916 13938226 -213586352 - AluSx SINE Alu -1 311 1 244 228 38 25 chr3 13938416 13938495 -213586083 - MLT1K LTR MaLR -12 576 497 305 192 26 13 chr3 13938944 13939022 -213585556 - L1ME4a LINE L1 -97 6024 5946 1830 131 0 0 chr3 13939095 13939354 -213585224 + AluSx SINE Alu 41 299 -13 2179 79 0 52 chr3 13939356 13939684 -213584894 + AluY SINE Alu 1 311 0 1456 166 3 48 chr3 13939790 13940103 -213584475 - AluJb SINE Alu 0 312 13 2154 115 3 0 chr3 13940237 13940542 -213584036 + AluSx SINE Alu 1 306 -6 318 256 174 12 chr3 13940574 13940746 -213583832 + L1ME LINE L1 5146 5345 -801 599 317 37 17 chr3 13940754 13941061 -213583517 + L1ME LINE L1 5373 5699 -422 1918 108 38 14 chr3 13941089 13941377 -213583201 + AluSx SINE Alu 14 308 -4 318 285 180 48 chr3 13941628 13941669 -213582909 + L2 LINE L2 2729 2763 -509 791 181 30 91 chr3 13941669 13941753 -213582825 - MER5A DNA MER1_type -2 187 99 2198 95 7 0 chr3 13941753 13942048 -213582530 - AluSx SINE Alu -15 297 1 791 181 30 91 chr3 13942048 13942162 -213582416 - MER5A DNA MER1_type -90 99 1 318 285 180 48 chr3 13942162 13942468 -213582110 + L2 LINE L2 2763 3113 -159 2579 48 0 0 chr3 13942487 13942798 -213581780 - AluY SINE Alu 0 311 1 276 369 76 0 chr3 13943560 13943717 -213580861 + MIR SINE MIR 80 248 -14 416 235 41 0 chr3 13943987 13944085 -213580493 - MER91C DNA MER1_type 0 140 39 499 201 148 58 chr3 13944099 13944288 -213580290 + MIR SINE MIR 31 236 -26 913 303 133 25 chr3 13944516 13944988 -213579590 - MLT1K LTR MaLR -10 578 56 187 311 0 14 chr3 13945003 13945077 -213579501 + L2 LINE L2 2987 3059 -213 443 317 76 51 chr3 13945346 13945622 -213578956 + MLT1L LTR MaLR 176 457 -158 1236 33 26 0 chr3 13945622 13945774 -213578804 + L1PA5 LINE L1 5999 6154 0 443 317 76 51 chr3 13945774 13945927 -213578651 + MLT1L LTR MaLR 457 605 -10 755 118 8 39 chr3 13946851 13946966 -213577612 + L1MC1 LINE L1 6211 6323 -10 1622 168 35 3 chr3 13946966 13947251 -213577327 + AluJo SINE Alu 1 294 -18 755 118 8 39 chr3 13947251 13947262 -213577316 + L1MC1 LINE L1 6323 6333 0 746 175 8 0 chr3 13947273 13947393 -213577185 + FLAM_C SINE Alu 1 121 -12 219 125 0 0 chr3 13947406 13947446 -213577132 + (CA)n Simple_repeat Simple_repeat 2 41 0 429 250 191 0 chr3 13947462 13947614 -213576964 - MIR SINE MIR -71 191 11 256 347 75 0 chr3 13947761 13947908 -213576670 - MIR3 SINE MIR -11 197 40 1797 148 20 10 chr3 13947940 13948245 -213576333 - AluJo SINE Alu -4 308 1 508 325 93 0 chr3 13948399 13948593 -213575985 + MIR SINE MIR 51 262 0 1225 102 0 0 chr3 13948748 13948914 -213575664 + AluSg/x SINE Alu 133 298 -14 240 280 10 0 chr3 13949211 13949311 -213575267 + L1MC4 LINE L1 7941 8041 -1 406 196 28 9 chr3 13949336 13949443 -213575135 + L1MB2 LINE L1 6047 6155 -16 811 110 0 0 chr3 13949443 13949552 -213575026 - AluSp/q SINE Alu -29 284 176 2380 65 0 7 chr3 13949603 13949910 -213574668 + AluY SINE Alu 1 305 -6 242 267 50 75 chr3 13949929 13950049 -213574529 - MER5B DNA MER1_type -55 123 7 24 32 0 0 chr3 13950568 13950599 -213573979 + AT_rich Low_complexity Low_complexity 1 31 0 283 313 54 71 chr3 13950623 13950691 -213573887 - L1ME4a LINE L1 -122 5999 5931 2221 109 3 0 chr3 13950691 13951003 -213573575 + AluSq SINE Alu 1 313 0 283 313 54 71 chr3 13951003 13951270 -213573308 - L1ME4a LINE L1 -190 5931 5670 198 286 0 0 chr3 13951784 13951833 -213572745 - L2 LINE L2 -11 3261 3213 593 297 73 52 chr3 13951837 13952038 -213572540 + MLT1J1 LTR MaLR 1 213 -233 2373 74 0 10 chr3 13952038 13952348 -213572230 - AluY SINE Alu -4 307 1 593 297 73 52 chr3 13952348 13952473 -213572105 + MLT1J1 LTR MaLR 213 334 -112 195 292 46 85 chr3 13952519 13952649 -213571929 - MIR SINE MIR -57 151 27 * 257 299 259 6 chr3 13952605 13952779 -213571799 + MIR SINE MIR 19 236 -26 427 257 118 0 chr3 13952790 13952934 -213571644 + L1ME3A LINE L1 5978 6138 -32 2409 66 0 0 chr3 13954351 13954654 -213569924 - AluY SINE Alu -8 303 1 1904 132 0 7 chr3 13954654 13954934 -213569644 - AluSx SINE Alu -18 294 16 2084 121 3 3 chr3 13954939 13955245 -213569333 - AluSx SINE Alu -6 306 1 211 246 46 31 chr3 13956171 13956236 -213568342 + L2 LINE L2 2957 3022 -250 249 336 80 8 chr3 13956619 13956744 -213567834 + L2 LINE L2 3179 3312 -1 661 267 21 69 chr3 13956759 13956999 -213567579 - MIR SINE MIR -3 259 30 384 316 130 9 chr3 13957741 13957956 -213566622 - MIR SINE MIR -20 242 2 580 293 0 7 chr3 13958117 13958264 -213566314 + MIR SINE MIR 11 156 -106 472 194 20 0 chr3 13958293 13958391 -213566187 + MIR SINE MIR 131 230 -32 219 261 57 11 chr3 13959921 13960009 -213564569 + L2 LINE L2 2146 2237 -1077 1333 213 56 39 chr3 13960288 13960327 -213564251 - L1ME1 LINE L1 -37 6129 6092 2295 76 0 0 chr3 13960327 13960618 -213563960 + AluY SINE Alu 1 291 -20 1333 213 56 39 chr3 13960618 13960633 -213563945 - L1ME1 LINE L1 -74 6092 6079 1149 171 0 0 chr3 13960633 13960803 -213563775 + FAM SINE Alu 1 170 -15 1333 213 56 39 chr3 13960803 13961104 -213563474 - L1ME1 LINE L1 -87 6079 5767 340 113 0 0 chr3 13961113 13961166 -213563412 - Alu SINE Alu 0 300 248 375 272 29 0 chr3 13961711 13961814 -213562764 + MIR SINE MIR 97 202 -60 680 187 88 103 chr3 13961837 13962036 -213562542 + MIR SINE MIR 5 201 -61 2395 95 0 0 chr3 13962036 13962331 -213562247 - AluSx SINE Alu -17 295 1 680 187 88 103 chr3 13962331 13962393 -213562185 + MIR SINE MIR 201 262 0 236 287 25 82 chr3 13962874 13962996 -213561582 - MER5B DNA MER1_type -29 149 35 2265 93 3 0 chr3 13962999 13963289 -213561289 - AluY SINE Alu -20 291 1 411 272 72 21 chr3 13963370 13963937 -213560641 - L1MC4 LINE L1 -413 7629 7098 1962 84 95 7 chr3 13963974 13964259 -213560319 - AluSx SINE Alu -1 311 2 2241 118 3 7 chr3 13964269 13964575 -213560003 - AluSq SINE Alu -8 305 1 180 88 59 29 chr3 13964580 13964614 -213559964 + MER5A DNA MER1_type 131 165 -24 1062 154 22 22 chr3 13965870 13966052 -213558526 + AluJb SINE Alu 121 302 -10 2252 77 0 4 chr3 13966052 13966326 -213558252 + AluSq SINE Alu 33 305 -8 259 162 73 88 chr3 13966328 13966396 -213558182 - MARNA DNA Mariner -70 516 450 537 256 81 11 chr3 13966559 13966735 -213557843 - MIR SINE MIR -62 146 5 335 256 35 0 chr3 13967797 13967883 -213556695 - MIR SINE MIR -61 147 59 373 227 92 87 chr3 13968133 13968219 -213556359 + MLT1D LTR MaLR 1 85 -420 1751 163 38 7 chr3 13968219 13968507 -213556071 + AluJb SINE Alu 1 297 -15 373 227 92 87 chr3 13968507 13968605 -213555973 + MLT1D LTR MaLR 85 186 -319 2305 102 7 3 chr3 13968611 13968915 -213555663 + AluSx SINE Alu 5 309 -3 1050 159 74 101 chr3 13968915 13969173 -213555405 + AluJo SINE Alu 45 295 -17 596 176 16 102 chr3 13969173 13969360 -213555218 + AluJo SINE Alu 42 212 -100 2046 144 7 13 chr3 13969395 13969700 -213554878 - AluJb SINE Alu -9 303 1 1931 93 66 0 chr3 13969714 13969972 -213554606 - AluSg SINE Alu -15 295 21 440 281 134 6 chr3 13970003 13970167 -213554411 - MIR SINE MIR -59 203 19 793 212 115 12 chr3 13970571 13970911 -213553667 + MLT1J2 LTR MaLR 1 427 -19 402 292 15 8 chr3 13970957 13971087 -213553491 - MIR3 SINE MIR -7 201 71 254 320 40 24 chr3 13971438 13971563 -213553015 + MLT1K LTR MaLR 69 195 -393 2267 112 0 0 chr3 13971774 13972069 -213552509 - AluSx SINE Alu -17 295 1 1864 117 4 4 chr3 13972078 13972334 -213552244 - AluSg SINE Alu -17 293 38 208 233 50 17 chr3 13973442 13973502 -213551076 - MIR SINE MIR -96 166 105 1357 209 23 36 chr3 13973502 13973671 -213550907 - AluJo SINE Alu -9 303 138 189 0 0 0 chr3 13973671 13973692 -213550886 + (TG)n Simple_repeat Simple_repeat 2 22 0 1357 209 23 36 chr3 13973692 13973823 -213550755 - AluJo SINE Alu -174 138 7 758 148 31 0 chr3 13973831 13973959 -213550619 - FLAM_C SINE Alu 0 133 2 599 261 186 36 chr3 13974564 13974951 -213549627 + L2 LINE L2 2869 3313 0 273 313 125 10 chr3 13974964 13975060 -213549518 - MIR SINE MIR -135 127 21 207 0 0 0 chr3 13975079 13975102 -213549476 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2130 98 0 4 chr3 13975102 13975379 -213549199 - AluSx SINE Alu -32 280 5 201 263 105 13 chr3 13975901 13975977 -213548601 - MIR3 SINE MIR -17 191 109 2208 146 56 30 chr3 13976423 13976855 -213547723 + LTR8A LTR ERV1 1 443 -284 687 169 12 31 chr3 13976856 13977016 -213547562 + AluY SINE Alu 64 220 -91 257 164 179 30 chr3 13977033 13977100 -213547478 - MIR SINE MIR -115 93 17 396 292 41 10 chr3 13977569 13977717 -213546861 - MIR SINE MIR -63 145 45 309 320 27 0 chr3 13978681 13979015 -213545563 + (TGGA)n Simple_repeat Simple_repeat 1 343 0 200 135 0 58 chr3 13979054 13979106 -213545472 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 2453 53 0 7 chr3 13979199 13979507 -213545071 + AluY SINE Alu 1 306 0 358 320 17 22 chr3 13979511 13979689 -213544889 + (TGGA)n Simple_repeat Simple_repeat 3 179 0 * 372 336 0 0 chr3 13979665 13979802 -213544776 + (TAGA)n Simple_repeat Simple_repeat 4 140 0 799 267 30 13 chr3 13979811 13980043 -213544535 + MIR SINE MIR 9 244 -18 261 0 0 0 chr3 13980049 13980078 -213544500 + (A)n Simple_repeat Simple_repeat 1 29 0 338 240 113 53 chr3 13981824 13981884 -213542694 + MIR SINE MIR 87 142 -120 2428 71 7 3 chr3 13981884 13982179 -213542399 - AluSp SINE Alu -17 296 1 338 240 113 53 chr3 13982179 13982268 -213542310 + MIR SINE MIR 142 245 -17 415 236 286 0 chr3 13982270 13982410 -213542168 + MER5A DNA MER1_type 4 183 -6 271 339 11 23 chr3 13982669 13982846 -213541732 + (TGGA)n Simple_repeat Simple_repeat 4 178 0 808 143 12 42 chr3 13983065 13983233 -213541345 + AluSg/x SINE Alu 133 295 -15 295 229 12 48 chr3 13983234 13983317 -213541261 + MER5A DNA MER1_type 108 187 -2 2040 108 38 14 chr3 13983609 13983897 -213540681 - AluSx SINE Alu -4 308 14 578 312 79 19 chr3 13983925 13984320 -213540258 - L1ME LINE L1 -422 5699 5255 2297 114 3 0 chr3 13984444 13984750 -213539828 - AluSx SINE Alu -5 307 1 1553 166 3 48 chr3 13984884 13985197 -213539381 + AluJb SINE Alu 13 312 0 2383 69 0 25 chr3 13985302 13985619 -213538959 - AluY SINE Alu 0 311 3 181 237 0 0 chr3 13985848 13985886 -213538692 - MER5B DNA MER1_type -137 41 4 275 307 91 0 chr3 13985897 13985985 -213538593 + L2 LINE L2 3139 3234 -38 957 97 0 0 chr3 13985999 13986123 -213538455 + FLAM_C SINE Alu 19 142 -1 708 247 163 45 chr3 13986510 13986866 -213537712 + L2 LINE L2 2916 3313 0 396 293 114 0 chr3 13986912 13987079 -213537499 - MIR SINE MIR 0 262 77 823 193 27 16 chr3 13987087 13987274 -213537304 + MER5A DNA MER1_type 1 189 0 497 89 129 20 chr3 13987302 13987403 -213537175 - L1MB7 LINE L1 0 6184 6073 192 77 0 0 chr3 13987427 13987453 -213537125 + (A)n Simple_repeat Simple_repeat 1 26 0 1828 63 0 9 chr3 13987456 13987678 -213536900 + AluSq SINE Alu 1 220 -93 699 92 0 23 chr3 13987679 13987831 -213536747 + AluSg/x SINE Alu 118 310 0 1227 30 0 0 chr3 13987837 13987969 -213536609 + AluY SINE Alu 1 132 -179 2341 88 7 10 chr3 13988760 13989067 -213535511 + AluY SINE Alu 1 306 -5 1730 77 0 9 chr3 13989072 13989294 -213535284 + AluSq SINE Alu 1 220 -93 325 114 0 0 chr3 13989295 13989339 -213535239 + AluSc SINE Alu 116 159 -140 699 83 0 28 chr3 13989339 13989447 -213535131 + AluSg/x SINE Alu 206 310 0 2569 68 0 3 chr3 13989458 13989767 -213534811 + AluY SINE Alu 1 308 -3 2484 80 0 6 chr3 13989774 13990086 -213534492 + AluY SINE Alu 1 310 -1 1342 211 73 35 chr3 13990095 13990464 -213534114 + L1MC4 LINE L1 7516 7898 -144 2022 146 0 0 chr3 13990873 13991154 -213533424 + AluSx SINE Alu 1 281 -31 2186 122 10 6 chr3 13991156 13991467 -213533111 + AluSx SINE Alu 1 312 0 242 304 69 65 chr3 13991471 13991718 -213532860 - L1ME4a LINE L1 -187 5934 5687 191 286 0 0 chr3 13992248 13992297 -213532281 - L2 LINE L2 -11 3261 3213 540 284 83 61 chr3 13992301 13992502 -213532076 + MLT1J1 LTR MaLR 1 213 -233 2522 74 0 10 chr3 13992502 13992812 -213531766 - AluY SINE Alu -4 307 1 540 284 83 61 chr3 13992812 13992937 -213531641 + MLT1J1 LTR MaLR 213 334 -112 187 274 53 80 chr3 13993000 13993113 -213531465 - MIR SINE MIR -72 136 27 * 241 299 259 6 chr3 13993069 13993243 -213531335 + MIR SINE MIR 19 236 -26 424 257 118 0 chr3 13993254 13993398 -213531180 + L1ME3A LINE L1 5978 6138 -32 217 299 19 58 chr3 13994356 13994510 -213530068 - L2 LINE L2 -181 3091 2944 2626 56 0 0 chr3 13994815 13995118 -213529460 - AluY SINE Alu -8 303 1 1197 178 82 10 chr3 13995118 13995421 -213529157 - L1MB8 LINE L1 -211 5967 5643 228 182 0 0 chr3 13995425 13995469 -213529109 + (TA)n Simple_repeat Simple_repeat 1 44 0 623 200 0 23 chr3 13995480 13995610 -213528968 - FLAM_A SINE Alu 0 142 16 205 71 24 48 chr3 13995748 13995790 -213528788 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 2432 97 0 3 chr3 13995847 13996157 -213528421 - AluSx SINE Alu -3 309 1 242 264 0 0 chr3 13996462 13996515 -213528063 + L2 LINE L2 3209 3261 -11 330 349 15 0 chr3 13998516 13998648 -213525930 + (TGGA)n Simple_repeat Simple_repeat 2 135 0 311 250 9 0 chr3 13998709 13998825 -213525753 + (TGGA)n Simple_repeat Simple_repeat 2 118 0 317 340 10 0 chr3 13998838 13998938 -213525640 + (TGGG)n Simple_repeat Simple_repeat 2 102 0 2558 61 0 0 chr3 13999210 13999506 -213525072 + AluY SINE Alu 1 296 -15 2476 75 0 0 chr3 14000442 14000737 -213523841 - AluY SINE Alu -16 295 1 808 129 0 50 chr3 14000767 14000907 -213523671 + FLAM_C SINE Alu 1 133 0 404 252 28 0 chr3 14000975 14001082 -213523496 - MIR SINE MIR -75 187 78 1912 123 76 4 chr3 14001083 14001360 -213523218 + AluSx SINE Alu 1 297 -15 219 303 30 15 chr3 14001920 14001986 -213522592 - MER91A DNA MER1_type 0 196 130 618 200 77 0 chr3 14002431 14002561 -213522017 - MIR SINE MIR -34 228 89 304 179 0 119 chr3 14002568 14002624 -213521954 + MER116 DNA Mariner 3 47 -33 2214 93 0 17 chr3 14002624 14002925 -213521653 - AluSx SINE Alu -16 296 1 304 179 0 119 chr3 14002925 14002952 -213521626 + MER116 DNA Mariner 47 76 -4 1130 130 0 30 chr3 14003040 14003209 -213521369 - AluSg/x SINE Alu -15 297 134 2304 114 0 7 chr3 14003209 14003517 -213521061 - AluSx SINE Alu -6 306 1 2135 119 0 16 chr3 14003517 14003709 -213520869 - AluSx SINE Alu -2 310 123 198 118 0 0 chr3 14003709 14003743 -213520835 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2135 119 0 16 chr3 14003743 14003861 -213520717 - AluSx SINE Alu -189 123 5 1838 173 0 17 chr3 14004082 14004383 -213520195 - AluJo SINE Alu -16 296 1 287 217 17 0 chr3 14004413 14004473 -213520105 - MIR SINE MIR -70 138 78 261 271 54 47 chr3 14004982 14005111 -213519467 - L2 LINE L2 -51 3262 3133 589 341 57 0 chr3 14005121 14005190 -213519388 - MIR SINE MIR -3 259 195 1952 137 0 44 chr3 14005190 14005359 -213519219 - AluSx SINE Alu -11 301 151 2133 91 31 11 chr3 14005359 14005645 -213518933 - AluSx SINE Alu -18 294 3 1952 137 0 44 chr3 14005645 14005790 -213518788 - AluSx SINE Alu -161 151 1 589 341 57 0 chr3 14005790 14005949 -213518629 - MIR SINE MIR -67 195 18 1006 295 167 16 chr3 14005987 14006960 -213517618 - L2 LINE L2 -263 3009 1879 186 143 0 0 chr3 14007054 14007089 -213517489 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 284 284 62 52 chr3 14008375 14008569 -213516009 - L2 LINE L2 -215 3057 2862 353 234 156 16 chr3 14008793 14008921 -213515657 - MIR SINE MIR -111 151 6 929 149 106 72 chr3 14009414 14009622 -213514956 + AluJb SINE Alu 33 247 -65 304 282 113 8 chr3 14010042 14010166 -213514412 - MIR SINE MIR -85 177 41 591 208 28 71 chr3 14010200 14010412 -213514166 + MER3 DNA MER1_type 2 204 -5 220 301 97 44 chr3 14010423 14010536 -213514042 + MIR3 SINE MIR 66 184 -24 207 69 0 0 chr3 14011342 14011371 -213513207 + (A)n Simple_repeat Simple_repeat 1 29 0 427 300 246 29 chr3 14012176 14012456 -213512122 + MER102b DNA MER1_type 1 341 0 406 303 86 0 chr3 14012482 14012644 -213511934 + MIR SINE MIR 31 206 -56 532 264 120 37 chr3 14012815 14013031 -213511547 - MIR SINE MIR -20 242 9 488 320 115 24 chr3 14014302 14014633 -213509945 + L3 LINE CR1 1145 1505 -72 2101 50 0 0 chr3 14014696 14014934 -213509644 + AluY SINE Alu 1 238 -73 1778 89 46 19 chr3 14014945 14015204 -213509374 + AluSq SINE Alu 35 300 -13 2610 54 0 0 chr3 14015204 14015499 -213509079 + AluY SINE Alu 1 295 -16 2558 61 0 0 chr3 14016433 14016729 -213507849 - AluY SINE Alu -15 296 1 317 340 10 0 chr3 14017001 14017101 -213507477 + (CCCA)n Simple_repeat Simple_repeat 2 102 0 311 250 9 0 chr3 14017114 14017230 -213507348 + (TCCA)n Simple_repeat Simple_repeat 2 118 0 330 349 15 0 chr3 14017291 14017423 -213507155 + (TCCA)n Simple_repeat Simple_repeat 2 135 0 242 264 0 0 chr3 14019424 14019477 -213505101 - L2 LINE L2 -11 3261 3209 2503 89 0 0 chr3 14019782 14020084 -213504494 + AluSx SINE Alu 1 302 -10 459 161 0 0 chr3 14020124 14020205 -213504373 - AluJ/FRAM SINE Alu -7 305 225 189 107 0 0 chr3 14021922 14021950 -213502628 + (TTTTC)n Simple_repeat Simple_repeat 5 32 0 * 245 109 22 0 chr3 14021945 14021991 -213502587 + CT-rich Low_complexity Low_complexity 2 48 0 201 318 16 0 chr3 14022082 14022145 -213502433 - L2 LINE L2 -3 3310 3247 1522 251 142 25 chr3 14022146 14022741 -213501837 - L2 LINE L2 -1 3312 2607 2574 84 0 0 chr3 14022741 14023052 -213501526 + AluY SINE Alu 1 311 0 1522 251 142 25 chr3 14023052 14023287 -213501291 - L2 LINE L2 -706 2607 2401 746 183 43 32 chr3 14023292 14023478 -213501100 + AluJo SINE Alu 121 308 -4 289 200 24 136 chr3 14023480 14023605 -213500973 - L2 LINE L2 -921 2393 2283 1572 198 0 42 chr3 14023608 14023921 -213500657 - AluJo SINE Alu -12 300 1 706 233 12 81 chr3 14024667 14024925 -213499653 - L1MA7 LINE L1 -159 6132 5893 432 274 0 0 chr3 14024923 14025036 -213499542 + L1MA7 LINE L1 6173 6285 -6 * 1054 267 44 0 chr3 14026218 14026559 -213498019 - L1M4b LINE L1 -5910 949 594 438 71 43 0 chr3 14026560 14026630 -213497948 + LTR5 LTR ERVK 1 73 -896 6804 82 11 3 chr3 14026630 14027479 -213497099 + LTR5 LTR ERVK 115 969 0 20954 64 2 3 chr3 14027479 14030198 -213494380 + HERVK LTR ERVK 1 2715 -4528 18418 43 2 2 chr3 14030176 14032470 -213492108 + HERVK LTR ERVK 4951 7243 0 * 8072 59 7 21 chr3 14032470 14033453 -213491125 + LTR5 LTR ERVK 1 969 0 256 234 0 0 chr3 14033513 14033577 -213491001 - Charlie5 DNA MER1_type -119 2493 2430 1820 173 29 0 chr3 14033612 14033954 -213490624 - MLT1A1 LTR MaLR -1 364 13 2019 157 0 0 chr3 14034141 14034440 -213490138 + AluSx SINE Alu 1 299 -13 189 0 0 0 chr3 14034505 14034526 -213490052 + (GCCTG)n Simple_repeat Simple_repeat 5 25 0 2232 122 0 7 chr3 14035014 14035317 -213489261 + AluSx SINE Alu 1 301 -11 362 136 0 61 chr3 14035340 14035406 -213489172 + AluJb SINE Alu 21 82 -220 25 31 0 0 chr3 14035406 14035438 -213489140 + AT_rich Low_complexity Low_complexity 1 32 0 1375 142 40 36 chr3 14035443 14035668 -213488910 + AluJb SINE Alu 64 289 -23 2110 116 13 20 chr3 14035677 14035978 -213488600 + AluSx SINE Alu 1 299 -13 1898 79 0 8 chr3 14036136 14036376 -213488202 + AluY SINE Alu 1 238 -73 1778 89 46 19 chr3 14036387 14036646 -213487932 + AluSq SINE Alu 35 300 -13 2547 58 0 0 chr3 14036646 14036940 -213487638 + AluY SINE Alu 1 294 -17 2471 83 3 10 chr3 14037050 14037362 -213487216 - AluSg SINE Alu 0 310 1 2521 96 0 0 chr3 14038080 14038392 -213486186 - AluSx SINE Alu 0 312 1 1793 175 3 16 chr3 14038679 14038982 -213485596 - AluJo SINE Alu -13 299 1 270 250 24 113 chr3 14039016 14039140 -213485438 + L2 LINE L2 2935 3047 -225 290 342 0 0 chr3 14039197 14039273 -213485305 + L2 LINE L2 3238 3313 0 2403 96 0 13 chr3 14039357 14039669 -213484909 + AluSx SINE Alu 1 308 -4 651 193 42 94 chr3 14039961 14040045 -213484533 - MER5A DNA MER1_type -2 187 100 2336 95 7 0 chr3 14040045 14040340 -213484238 - AluSx SINE Alu -15 297 1 651 193 42 94 chr3 14040340 14040447 -213484131 - MER5A DNA MER1_type -89 100 6 283 274 207 40 chr3 14040456 14040756 -213483822 + L2 LINE L2 2766 3113 -159 2574 52 10 0 chr3 14040775 14041083 -213483495 - AluY SINE Alu 0 311 1 2244 90 33 20 chr3 14041668 14041969 -213482609 + AluSq SINE Alu 7 311 -2 2178 108 3 54 chr3 14041976 14042292 -213482286 + AluSp SINE Alu 2 301 -12 732 221 7 0 chr3 14042311 14042456 -213482122 - MIR SINE MIR -12 250 105 326 259 46 56 chr3 14042476 14042584 -213481994 - L2 LINE L2 -49 3223 3117 2246 120 0 0 chr3 14042592 14042883 -213481695 - AluSq SINE Alu -22 291 1 1091 152 11 43 chr3 14043164 14043348 -213481230 - FAM SINE Alu -7 42 1 219 262 16 0 chr3 14043736 14043797 -213480781 + MIR SINE MIR 82 143 -65 245 232 29 94 chr3 14043893 14043922 -213480656 - L1ME4a LINE L1 -1 6120 6091 1942 115 38 54 chr3 14043922 14044236 -213480342 + AluSq SINE Alu 1 309 -4 245 232 29 94 chr3 14044236 14044344 -213480234 - L1ME4a LINE L1 -30 6091 5992 522 290 65 9 chr3 14044366 14044580 -213479998 + MIR SINE MIR 19 244 -18 192 164 0 49 chr3 14045184 14045245 -213479333 + CT-rich Low_complexity Low_complexity 1 58 0 1084 226 91 47 chr3 14045267 14045697 -213478881 - L2 LINE L2 -20 3293 2845 2437 88 0 13 chr3 14046319 14046627 -213477951 - AluSg1 SINE Alu -5 304 1 1192 162 0 0 chr3 14046785 14046958 -213477620 - AluSg/x SINE Alu -13 297 125 303 96 72 0 chr3 14046961 14047044 -213477534 + (TA)n Simple_repeat Simple_repeat 1 89 0 292 48 48 0 chr3 14047044 14047086 -213477492 - AluSg/x SINE Alu -173 127 84 992 165 4 115 chr3 14047086 14047329 -213477249 - AluJo SINE Alu -92 220 5 419 277 55 21 chr3 14047329 14047512 -213477066 - MIR SINE MIR -55 207 16 774 210 0 89 chr3 14048406 14048496 -213476082 - MER3 DNA MER1_type -8 201 105 2124 85 22 63 chr3 14048496 14048812 -213475766 + AluSq SINE Alu 2 304 -9 774 210 0 89 chr3 14048812 14048935 -213475643 - MER3 DNA MER1_type -104 105 7 458 223 192 8 chr3 14049598 14049728 -213474850 - MER5A DNA MER1_type -6 183 30 450 326 67 5 chr3 14049763 14049956 -213474622 - MIR SINE MIR -38 224 20 328 266 13 0 chr3 14050124 14050203 -213474375 + MER5A DNA MER1_type 18 97 -92 2213 104 10 13 chr3 14050785 14051083 -213473495 - AluSg SINE Alu -13 297 1 242 264 0 0 chr3 14051388 14051441 -213473137 + L2 LINE L2 3209 3261 -11 330 349 15 0 chr3 14053442 14053574 -213471004 + (TGGA)n Simple_repeat Simple_repeat 2 135 0 311 250 9 0 chr3 14053635 14053751 -213470827 + (TGGA)n Simple_repeat Simple_repeat 2 118 0 317 340 10 0 chr3 14053764 14053864 -213470714 + (TGGG)n Simple_repeat Simple_repeat 2 102 0 2553 78 0 0 chr3 14054136 14054444 -213470134 + AluY SINE Alu 1 308 -3 250 222 14 42 chr3 14054447 14054519 -213470059 - MIR SINE MIR -116 146 77 198 349 94 7 chr3 14054625 14054774 -213469804 + L2 LINE L2 2871 3032 -240 307 374 32 8 chr3 14055139 14055262 -213469316 + L2 LINE L2 3119 3244 -28 1085 235 30 0 chr3 14055295 14055529 -213469049 - MIR SINE MIR 0 262 22 741 47 16 70 chr3 14055855 14055983 -213468595 + L1PA13 LINE L1 6042 6162 -1 425 318 79 28 chr3 14056058 14056310 -213468268 - L1MEc LINE L1 -3999 2397 2133 231 36 0 0 chr3 14056329 14056357 -213468221 + (TA)n Simple_repeat Simple_repeat 2 29 0 2195 112 0 0 chr3 14056357 14056642 -213467936 - AluSg1 SINE Alu -24 285 1 649 277 47 47 chr3 14056693 14056946 -213467632 - MIR SINE MIR -5 257 5 852 170 50 0 chr3 14057047 14057206 -213467372 + MER2 DNA MER2_type 1 167 -178 1906 132 24 17 chr3 14057217 14057513 -213467065 + AluJo SINE Alu 1 298 -14 2266 115 0 10 chr3 14057535 14057848 -213466730 + AluSg SINE Alu 1 310 0 641 91 0 55 chr3 14058259 14058369 -213466209 - AluSg SINE Alu -205 105 2 457 88 0 55 chr3 14059991 14060082 -213464496 + Alu SINE Alu 224 309 0 1552 166 3 48 chr3 14060187 14060500 -213464078 - AluJb SINE Alu 0 312 13 2448 68 7 3 chr3 14060634 14060928 -213463650 + AluY SINE Alu 1 295 -16 189 0 0 0 chr3 14060935 14060956 -213463622 + (T)n Simple_repeat Simple_repeat 1 21 0 533 268 53 53 chr3 14061543 14061771 -213462807 - L2 LINE L2 -1 3312 3085 293 202 27 209 chr3 14061850 14061942 -213462636 + MIR SINE MIR 35 142 -120 2188 124 0 3 chr3 14061942 14062241 -213462337 - AluSc SINE Alu -11 298 1 293 202 27 209 chr3 14062241 14062261 -213462317 + MIR SINE MIR 142 164 -98 2515 90 0 0 chr3 14062261 14062573 -213462005 - AluSx SINE Alu 0 312 1 293 202 27 209 chr3 14062573 14062602 -213461976 + MIR SINE MIR 164 197 -65 1724 165 53 3 chr3 14062602 14062887 -213461691 + AluJo SINE Alu 1 299 -13 293 202 27 209 chr3 14062887 14063001 -213461577 + MIR SINE MIR 197 245 -17 708 238 48 29 chr3 14063532 14063738 -213460840 + MIR SINE MIR 2 211 -51 2322 97 24 0 chr3 14063983 14064281 -213460297 + AluSx SINE Alu 1 305 -7 1594 155 26 37 chr3 14064937 14065208 -213459370 - AluJb SINE Alu -21 291 24 577 234 48 30 chr3 14065222 14065389 -213459189 - L2 LINE L2 -9 3304 3135 2388 102 0 0 chr3 14065392 14065695 -213458883 + AluSx SINE Alu 1 303 -9 342 308 19 0 chr3 14065814 14065921 -213458657 + MIR SINE MIR 46 154 -108 217 275 125 0 chr3 14065929 14066009 -213458569 - MIR SINE MIR -4 258 169 403 259 122 27 chr3 14066057 14066204 -213458374 - MIR SINE MIR -96 166 6 413 238 165 61 chr3 14066994 14067158 -213457420 + MIR SINE MIR 22 202 -60 680 187 88 103 chr3 14067181 14067380 -213457198 + MIR SINE MIR 5 201 -61 2395 95 0 0 chr3 14067380 14067675 -213456903 - AluSx SINE Alu -17 295 1 680 187 88 103 chr3 14067675 14067737 -213456841 + MIR SINE MIR 201 262 0 236 287 25 82 chr3 14068218 14068340 -213456238 - MER5B DNA MER1_type -29 149 35 2265 93 3 0 chr3 14068343 14068633 -213455945 - AluY SINE Alu -20 291 1 411 272 72 21 chr3 14068714 14069281 -213455297 - L1MC4 LINE L1 -413 7629 7098 1962 84 95 7 chr3 14069318 14069603 -213454975 - AluSx SINE Alu -1 311 2 1959 141 10 13 chr3 14069613 14069919 -213454659 - AluSq SINE Alu -8 305 1 304 282 113 8 chr3 14070278 14070402 -213454176 - MIR SINE MIR -85 177 41 591 208 28 71 chr3 14070436 14070648 -213453930 + MER3 DNA MER1_type 2 204 -5 220 301 97 44 chr3 14070659 14070772 -213453806 + MIR3 SINE MIR 66 184 -24 207 69 0 0 chr3 14071580 14071609 -213452969 + (A)n Simple_repeat Simple_repeat 1 29 0 427 300 246 29 chr3 14072414 14072694 -213451884 + MER102b DNA MER1_type 1 341 0 406 303 86 0 chr3 14072720 14072882 -213451696 + MIR SINE MIR 31 206 -56 532 264 120 37 chr3 14073053 14073269 -213451309 - MIR SINE MIR -20 242 9 488 320 115 24 chr3 14074541 14074872 -213449706 + L3 LINE CR1 1145 1505 -72 2101 50 0 0 chr3 14074935 14075173 -213449405 + AluY SINE Alu 1 238 -73 1778 89 46 19 chr3 14075184 14075443 -213449135 + AluSq SINE Alu 35 300 -13 2661 44 0 0 chr3 14075443 14075739 -213448839 + AluY SINE Alu 1 296 -15 2471 83 3 10 chr3 14075847 14076159 -213448419 - AluSg SINE Alu 0 310 1 633 283 62 52 chr3 14076757 14076877 -213447701 - MER113 DNA MER1_type? -5 516 399 2557 93 0 0 chr3 14076877 14077189 -213447389 - AluSx SINE Alu 0 312 1 633 283 62 52 chr3 14077189 14077393 -213447185 - MER113 DNA MER1_type? -122 399 189 2207 116 0 0 chr3 14077393 14077685 -213446893 + AluSq SINE Alu 1 292 -21 463 304 120 14 chr3 14078099 14078316 -213446262 + MIR SINE MIR 20 259 -3 1023 137 137 19 chr3 14078326 14078375 -213446203 + MER46A DNA MER2_type 1 43 -2688 2190 138 0 0 chr3 14078375 14078672 -213445906 + AluSx SINE Alu 1 297 -15 1023 137 137 19 chr3 14078672 14078833 -213445745 + MER46A DNA MER2_type 43 236 0 25 0 0 0 chr3 14079129 14079154 -213445424 + AT_rich Low_complexity Low_complexity 1 25 0 2060 108 3 21 chr3 14079209 14079532 -213445046 - AluSx SINE Alu 0 318 1 199 139 13 177 chr3 14079608 14079687 -213444891 - MIR3 SINE MIR -133 75 10 * 237 223 11 106 chr3 14079671 14079698 -213444880 + L2 LINE L2 2976 3004 -268 2647 62 0 0 chr3 14079698 14080006 -213444572 - AluY SINE Alu -3 308 1 237 223 11 106 chr3 14080006 14080072 -213444506 + L2 LINE L2 3004 3060 -212 203 430 0 0 chr3 14080146 14080232 -213444346 + L2 LINE L2 3111 3196 -76 240 143 0 0 chr3 14080728 14080770 -213443808 + (TCTCCC)n Simple_repeat Simple_repeat 1 42 0 224 30 30 0 chr3 14080798 14080831 -213443747 + (CAAAAA)n Simple_repeat Simple_repeat 1 34 0 329 43 0 0 chr3 14080942 14080988 -213443590 + AluY SINE Alu 255 300 -1 2304 122 0 0 chr3 14081135 14081438 -213443140 - AluSg SINE Alu -7 303 1 2630 65 0 0 chr3 14081447 14081756 -213442822 - AluY SINE Alu -2 309 1 706 233 12 81 chr3 14082502 14082760 -213441818 - L1MA7 LINE L1 -159 6132 5893 432 274 0 0 chr3 14082758 14082871 -213441707 + L1MA7 LINE L1 6173 6285 -6 * 1054 267 44 0 chr3 14084053 14084394 -213440184 - L1M4b LINE L1 -5910 949 594 438 71 43 0 chr3 14084395 14084465 -213440113 + LTR5 LTR ERVK 1 73 -896 6839 82 11 2 chr3 14084465 14085313 -213439265 + LTR5 LTR ERVK 115 969 0 20502 69 2 4 chr3 14085313 14088009 -213436569 + HERVK LTR ERVK 1 2691 -4552 1218 199 8 13 chr3 14088043 14088279 -213436299 + AluJb SINE Alu 58 292 -20 312 93 0 0 chr3 14088280 14088323 -213436255 + L1MB7 LINE L1 5390 5432 -734 875 144 0 27 chr3 14088348 14088494 -213436084 + FLAM_C SINE Alu 1 142 -1 2201 122 3 3 chr3 14088531 14088834 -213435744 + AluSp SINE Alu 1 303 -10 1666 168 14 50 chr3 14088846 14088982 -213435596 + L1MB7 LINE L1 5477 5616 -568 1729 180 3 26 chr3 14088982 14089287 -213435291 + AluJo SINE Alu 9 306 -6 1666 168 14 50 chr3 14089287 14089513 -213435065 + L1MB7 LINE L1 5616 5826 -358 1476 186 4 8 chr3 14089523 14089775 -213434803 + AluJo SINE Alu 3 253 -59 581 159 0 0 chr3 14089831 14089938 -213434640 + L1MB7 LINE L1 6062 6168 -16 2118 137 10 0 chr3 14090911 14091210 -213433368 + AluSx SINE Alu 1 302 -10 682 221 30 43 chr3 14091211 14091332 -213433246 - LTR37A LTR ERV1 -60 366 248 1295 191 47 85 chr3 14091332 14091651 -213432927 + AluJo SINE Alu 1 307 -5 682 221 30 43 chr3 14091651 14091760 -213432818 - LTR37A LTR ERV1 -178 248 139 340 271 143 15 chr3 14091912 14092077 -213432501 - MIR SINE MIR -53 155 10 2179 134 0 6 chr3 14092501 14092815 -213431763 - AluSx SINE Alu 0 312 1 2009 149 3 0 chr3 14092820 14093122 -213431456 - AluSx SINE Alu -9 303 1 571 206 0 30 chr3 14093900 14094031 -213430547 + FLAM_A SINE Alu 1 127 -6 2172 125 3 0 chr3 14094427 14094724 -213429854 + AluSx SINE Alu 1 298 -14 1858 135 24 17 chr3 14094790 14095086 -213429492 + AluJo SINE Alu 1 298 -14 2266 115 0 10 chr3 14095108 14095421 -213429157 + AluSg SINE Alu 1 310 0 2569 54 0 0 chr3 14096317 14096611 -213427967 - AluY SINE Alu -17 294 1 200 265 36 48 chr3 14098267 14098350 -213426228 - L2 LINE L2 -208 3105 3024 1967 132 51 0 chr3 14099284 14099580 -213424998 + AluSx SINE Alu 1 311 -1 1094 69 0 0 chr3 14099582 14099712 -213424866 + AluY SINE Alu 3 132 -179 270 257 101 9 chr3 14100999 14101108 -213423470 - L2 LINE L2 -171 3142 3024 2325 122 6 0 chr3 14101119 14101472 -213423106 - THE1A LTR MaLR 0 355 1 2132 124 3 22 chr3 14102194 14102508 -213422070 + AluSx SINE Alu 1 308 -4 2304 122 0 0 chr3 14102648 14102951 -213421627 - AluSg SINE Alu -7 303 1 2641 62 0 0 chr3 14102960 14103269 -213421309 - AluY SINE Alu -2 309 1 1197 178 82 10 chr3 14103269 14103572 -213421006 - L1MB8 LINE L1 -211 5967 5643 228 182 0 0 chr3 14103576 14103620 -213420958 + (TA)n Simple_repeat Simple_repeat 1 44 0 623 200 0 23 chr3 14103631 14103761 -213420817 - FLAM_A SINE Alu 0 142 16 205 71 24 48 chr3 14103899 14103941 -213420637 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 2347 101 0 3 chr3 14103998 14104304 -213420274 - AluSg SINE Alu -3 307 3 2484 86 0 3 chr3 14104306 14104610 -213419968 - AluSc SINE Alu -6 303 1 1677 159 35 14 chr3 14104612 14104902 -213419676 - AluJb SINE Alu -16 296 1 186 43 0 0 chr3 14105065 14105088 -213419490 + (A)n Simple_repeat Simple_repeat 1 23 0 349 164 33 0 chr3 14105717 14105778 -213418800 + MER20 DNA MER1_type 3 65 -154 236 207 138 58 chr3 14105821 14105908 -213418670 + MER20 DNA MER1_type 57 150 -69 191 289 156 0 chr3 14106007 14106097 -213418481 - L2 LINE L2 -11 3261 3158 2508 79 0 0 chr3 14106240 14106543 -213418035 - AluY SINE Alu -8 303 1 267 252 176 15 chr3 14106576 14106707 -213417871 + L2 LINE L2 2872 3023 -249 703 177 8 0 chr3 14107059 14107183 -213417395 - FLAM_C SINE Alu -6 127 3 1666 168 14 50 chr3 14107193 14107419 -213417159 - L1MB7 LINE L1 -358 5826 5616 1730 180 3 26 chr3 14107419 14107724 -213416854 - AluJo SINE Alu -6 306 9 1666 168 14 50 chr3 14107724 14107860 -213416718 - L1MB7 LINE L1 -568 5616 5477 2232 116 3 3 chr3 14107872 14108175 -213416403 - AluSp SINE Alu -10 303 1 875 144 0 27 chr3 14108212 14108358 -213416220 - FLAM_C SINE Alu -1 142 1 939 154 46 36 chr3 14108383 14108427 -213416151 - L1MB7 LINE L1 -739 5435 5393 1913 174 0 3 chr3 14108427 14108720 -213415858 - AluJb SINE Alu -20 292 1 939 154 46 36 chr3 14108720 14108951 -213415627 - L1MB7 LINE L1 -781 5393 5162 2189 117 0 3 chr3 14108951 14109242 -213415336 + AluSx SINE Alu 1 290 -22 939 154 46 36 chr3 14109242 14109299 -213415279 - L1MB7 LINE L1 -1012 5162 5107 540 193 107 7 chr3 14109308 14109491 -213415087 - L1 LINE L1 -961 5185 4981 2423 52 3 43 chr3 14109575 14109880 -213414698 + AluY SINE Alu 1 293 -18 186 327 144 0 chr3 14109930 14110034 -213414544 + MIR SINE MIR 119 237 -25 1033 176 176 8 chr3 14110158 14110403 -213414175 + L1MC4 LINE L1 6725 7010 -1032 204 40 0 0 chr3 14110454 14110479 -213414099 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1711 165 18 18 chr3 14110479 14110764 -213413814 + AluJo SINE Alu 1 285 -27 1302 167 20 20 chr3 14110515 14110764 -213413814 + AluJo SINE Alu 37 314 0 262 0 0 0 chr3 14110764 14110793 -213413785 + (TAA)n Simple_repeat Simple_repeat 2 180 0 341 241 181 23 chr3 14110808 14110941 -213413637 + L1MC4 LINE L1 7247 7400 -642 1986 142 3 0 chr3 14110978 14111266 -213413312 - AluSx SINE Alu -23 289 1 598 206 0 30 chr3 14111662 14111793 -213412785 - FLAM_A SINE Alu -6 127 1 1851 149 3 0 chr3 14112571 14112873 -213411705 + AluSx SINE Alu 1 303 -9 2016 134 0 6 chr3 14112878 14113192 -213411386 + AluSx SINE Alu 1 312 0 366 271 143 15 chr3 14113616 14113781 -213410797 + MIR SINE MIR 10 189 -53 694 215 30 68 chr3 14113933 14114048 -213410530 + LTR37A LTR ERV1 139 242 -184 1262 192 48 86 chr3 14114048 14114361 -213410217 - AluJo SINE Alu -1 301 1 694 215 30 68 chr3 14114361 14114482 -213410096 + LTR37A LTR ERV1 242 366 -60 1962 137 10 0 chr3 14114483 14114782 -213409796 - AluSx SINE Alu -10 302 1 583 164 0 0 chr3 14115758 14115862 -213408716 - L1MB7 LINE L1 -19 6165 6062 1475 145 0 0 chr3 14115942 14116170 -213408408 - AluSc SINE Alu -81 228 1 1532 153 35 14 chr3 14116180 14116462 -213408116 - AluJb SINE Alu -24 288 1 186 43 0 0 chr3 14116625 14116648 -213407930 + (A)n Simple_repeat Simple_repeat 1 23 0 368 164 33 0 chr3 14117277 14117338 -213407240 + MER20 DNA MER1_type 3 65 -154 476 213 176 15 chr3 14117381 14117517 -213407061 + MER20 DNA MER1_type 57 214 -5 235 278 156 0 chr3 14117568 14117658 -213406920 - L2 LINE L2 -11 3261 3158 2374 78 0 0 chr3 14117799 14118105 -213406473 - AluY SINE Alu -5 306 1 2062 106 0 3 chr3 14118361 14118653 -213405925 - AluSx SINE Alu -21 291 1 2035 141 0 0 chr3 14118653 14118951 -213405627 - AluSx SINE Alu -14 298 1 325 275 42 49 chr3 14118962 14119104 -213405474 + L2 LINE L2 3171 3311 -2 1253 104 22 6 chr3 14119758 14119941 -213404637 + AluSg/x SINE Alu 115 300 -10 255 321 10 14 chr3 14119943 14120233 -213404345 + AluYa5 SINE Alu 3 291 -10 1410 214 146 71 chr3 14120950 14121596 -213402982 + L1MC5 LINE L1 6837 7530 -431 328 287 46 40 chr3 14121679 14121853 -213402725 + L1ME3A LINE L1 5987 6161 -9 209 262 19 37 chr3 14121857 14121964 -213402614 + (TATG)n Simple_repeat Simple_repeat 4 108 0 * 222 298 12 12 chr3 14121884 14121968 -213402610 + (TCTG)n Simple_repeat Simple_repeat 4 87 0 508 202 0 25 chr3 14122579 14122698 -213401880 - FLAM_A SINE Alu -17 116 1 2080 138 0 0 chr3 14123467 14123779 -213400799 + AluSx SINE Alu 1 312 0 1961 111 27 10 chr3 14123812 14124109 -213400469 + AluSx SINE Alu 1 302 -10 330 284 149 14 chr3 14124544 14124692 -213399886 + MIR SINE MIR 22 189 -73 1280 180 103 4 chr3 14124792 14125064 -213399514 + AluJo SINE Alu 1 299 -13 2509 58 3 0 chr3 14125414 14125725 -213398853 + AluSx SINE Alu 1 312 0 1736 148 7 7 chr3 14125735 14126033 -213398545 + AluSx SINE Alu 1 298 -14 225 222 0 0 chr3 14126035 14126089 -213398489 - MER20B DNA MER1_type -726 57 4 1657 173 10 7 chr3 14126273 14126568 -213398010 - AluJb SINE Alu -7 305 10 1982 109 3 7 chr3 14126629 14126923 -213397655 + AluSg SINE Alu 1 293 -17 1996 107 3 17 chr3 14126935 14127233 -213397345 + AluSx SINE Alu 3 296 -16 808 165 0 0 chr3 14127449 14127570 -213397008 + AluJb SINE Alu 2 122 -190 207 0 0 0 chr3 14127570 14127593 -213396985 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 816 112 15 175 chr3 14127925 14128131 -213396447 - AluJb SINE Alu -10 302 130 490 88 0 15 chr3 14129089 14129179 -213395399 - Alu SINE Alu 0 310 222 815 108 8 8 chr3 14129179 14129308 -213395270 - AluSq/x SINE Alu -184 129 1 2156 102 3 3 chr3 14129623 14129926 -213394652 + AluSx SINE Alu 1 303 -9 441 0 0 0 chr3 14129927 14129976 -213394602 + (TA)n Simple_repeat Simple_repeat 2 50 0 639 227 35 0 chr3 14129981 14130122 -213394456 + MER5A DNA MER1_type 5 150 -39 2012 104 31 0 chr3 14130786 14131073 -213393505 + AluSx SINE Alu 1 296 -16 2388 52 7 3 chr3 14131433 14131738 -213392840 - AluY SINE Alu -3 308 3 522 96 0 0 chr3 14131825 14131898 -213392680 + AluS SINE Alu 6 78 -235 626 183 0 40 chr3 14132974 14133100 -213391478 + FLAM_A SINE Alu 21 141 -1 2124 95 3 0 chr3 14133658 14133952 -213390626 - AluSg SINE Alu -9 301 7 2180 82 3 3 chr3 14133983 14134274 -213390304 - AluY SINE Alu -20 291 1 612 157 18 39 chr3 14134276 14134398 -213390180 - L1M4 LINE L1 -488 5663 5553 278 333 57 0 chr3 14134398 14134521 -213390057 - MIR3 SINE MIR -77 131 2 463 321 154 55 chr3 14134660 14134722 -213389856 + L2 LINE L2 2791 2846 -426 306 209 0 0 chr3 14134722 14134789 -213389789 - L1MB8 LINE L1 -9 6169 6103 463 321 154 55 chr3 14134789 14135075 -213389503 + L2 LINE L2 2846 3192 -80 1620 83 0 9 chr3 14135075 14135303 -213389275 - AluY SINE Alu -6 305 80 463 321 154 55 chr3 14135303 14135388 -213389190 + L2 LINE L2 3192 3267 -5 483 243 79 13 chr3 14135798 14135950 -213388628 + MLT1K LTR MaLR 419 580 -8 1307 107 122 0 chr3 14136143 14136348 -213388230 - MER30 DNA MER1_type 0 230 1 1682 79 0 0 chr3 14136622 14136837 -213387741 - AluSq SINE Alu -16 297 83 186 240 0 20 chr3 14137056 14137106 -213387472 + L2 LINE L2 2931 2979 -334 732 157 16 0 chr3 14137351 14137472 -213387106 + FLAM_C SINE Alu 1 123 -10 219 36 0 0 chr3 14138401 14138429 -213386149 + (TA)n Simple_repeat Simple_repeat 2 29 0 2101 101 0 14 chr3 14138429 14138726 -213385852 - AluSg1 SINE Alu -16 293 1 531 293 28 83 chr3 14139206 14139459 -213385119 - MIR SINE MIR -8 254 16 562 210 86 37 chr3 14139910 14140072 -213384506 + FRAM SINE Alu 4 173 -3 1498 156 0 50 chr3 14140083 14140366 -213384212 + AluJo SINE Alu 9 277 -35 486 0 0 0 chr3 14140367 14140421 -213384157 + (TAGA)n Simple_repeat Simple_repeat 3 56 0 2887 174 77 61 chr3 14140466 14141183 -213383395 - L1MB7 LINE L1 -17 6167 5440 2280 88 0 0 chr3 14141184 14141479 -213383099 - AluSg SINE Alu -15 295 1 1733 99 3 128 chr3 14141488 14141832 -213382746 - AluSg1 SINE Alu -8 301 1 1019 214 37 7 chr3 14141842 14142113 -213382465 - L1MB4 LINE L1 0 6180 5902 755 186 164 0 chr3 14142140 14142280 -213382298 - FRAM SINE Alu -19 157 1 4176 195 62 34 chr3 14142320 14142886 -213381692 - L1MB4 LINE L1 -1144 5002 4396 2148 106 0 0 chr3 14142886 14143178 -213381400 - AluSc SINE Alu -17 292 1 4176 195 62 34 chr3 14143178 14143602 -213380976 - L1MB4 LINE L1 -1750 4396 3985 1069 151 0 0 chr3 14143602 14143768 -213380810 - AluSg/x SINE Alu -11 299 134 2274 94 3 0 chr3 14143770 14144077 -213380501 - AluSp SINE Alu -5 308 1 2210 92 0 3 chr3 14144251 14144546 -213380032 - AluSc SINE Alu -15 294 1 22 35 0 0 chr3 14144587 14144616 -213379962 + AT_rich Low_complexity Low_complexity 1 29 0 438 251 131 0 chr3 14144675 14144866 -213379712 - L1ME LINE L1 -303 5818 5603 710 139 42 69 chr3 14144879 14144999 -213379579 + FLAM_C SINE Alu 2 124 -83 2138 108 7 0 chr3 14144999 14145294 -213379284 + AluSp SINE Alu 1 297 -16 2435 55 0 6 chr3 14145297 14145609 -213378969 + AluY SINE Alu 1 310 -1 710 139 42 69 chr3 14145609 14145694 -213378884 + FLAM_C SINE Alu 126 207 0 755 139 14 83 chr3 14145695 14145839 -213378739 + AluJo SINE Alu 2 135 -177 1985 122 20 3 chr3 14145841 14146144 -213378434 + AluSx SINE Alu 1 308 -4 780 135 23 23 chr3 14146211 14146344 -213378234 - FLAM_C SINE Alu 0 133 1 1549 132 115 65 chr3 14146611 14146736 -213377842 + THE1C LTR MaLR 1 118 -257 2300 93 0 0 chr3 14146736 14147038 -213377540 - AluSg1 SINE Alu -7 302 1 1549 132 115 65 chr3 14147038 14147268 -213377310 + THE1C LTR MaLR 118 374 -1 927 133 21 0 chr3 14147877 14148020 -213376558 - MER46B DNA MER2_type 0 236 91 1646 178 75 42 chr3 14148020 14148380 -213376198 - MER21A LTR ERV1 0 931 560 350 58 0 39 chr3 14148374 14148426 -213376152 - AluJo SINE Alu -8 294 245 * 813 212 41 0 chr3 14148428 14148598 -213375980 - AluJo SINE Alu -135 177 1 1038 137 71 18 chr3 14148598 14148839 -213375739 - MER21B LTR ERV1 -376 487 214 899 141 7 0 chr3 14148847 14148989 -213375589 + AluJo SINE Alu 20 162 -150 346 113 65 0 chr3 14148989 14149051 -213375527 - MER21A LTR ERV1 -863 68 3 770 186 170 0 chr3 14149051 14149239 -213375339 - MER46B DNA MER2_type -141 95 1 2241 100 7 0 chr3 14149433 14149734 -213374844 - AluSq SINE Alu -10 303 1 207 0 0 0 chr3 14150122 14150145 -213374433 + (A)n Simple_repeat Simple_repeat 1 23 0 1786 126 75 10 chr3 14150288 14150445 -213374133 - AluSq SINE Alu -1 312 167 2131 91 0 10 chr3 14150445 14150752 -213373826 - AluY SINE Alu -6 305 2 1786 126 75 10 chr3 14150752 14150887 -213373691 - AluSq SINE Alu -146 167 1 2053 136 0 7 chr3 14151271 14151581 -213372997 - AluSx SINE Alu -4 308 1 751 237 6 17 chr3 14151605 14151782 -213372796 + MER5B DNA MER1_type 4 178 0 449 226 182 17 chr3 14151953 14152010 -213372568 + MIR SINE MIR 2 48 -214 2310 173 88 11 chr3 14152010 14152454 -213372124 - MER66A LTR ERV1 0 478 1 449 226 182 17 chr3 14152454 14152577 -213372001 + MIR SINE MIR 48 212 -50 430 304 22 77 chr3 14153396 14153669 -213370909 - MIR SINE MIR 0 262 5 290 294 125 22 chr3 14153696 14153832 -213370746 + MIR SINE MIR 61 210 -52 760 215 101 0 chr3 14153921 14154079 -213370499 + MIR SINE MIR 86 259 -3 350 115 16 0 chr3 14154080 14154141 -213370437 + (TA)n Simple_repeat Simple_repeat 1 62 0 1771 138 39 0 chr3 14154173 14154456 -213370122 - AluSx SINE Alu -18 294 1 2130 122 0 3 chr3 14154584 14154887 -213369691 - AluSx SINE Alu -10 302 1 2346 82 0 0 chr3 14155413 14155716 -213368862 - AluSx SINE Alu -9 303 1 2318 69 3 3 chr3 14155874 14156178 -213368400 + AluY SINE Alu 1 304 -7 1519 153 34 27 chr3 14156346 14156608 -213367970 - AluJo SINE Alu -48 264 1 240 197 115 0 chr3 14157166 14157227 -213367351 + L2 LINE L2 2792 2859 -455 185 290 129 32 chr3 14157328 14157452 -213367126 - L2 LINE L2 -554 2760 2625 2327 78 0 7 chr3 14158332 14158640 -213365938 - AluSx SINE Alu -6 306 1 182 33 67 0 chr3 14158641 14158671 -213365907 + T-rich Low_complexity Low_complexity 2 33 0 834 167 0 0 chr3 14158674 14158806 -213365772 + AluJb SINE Alu 157 288 -24 674 226 27 21 chr3 14158808 14158994 -213365584 + ORSL DNA AcHobo 89 275 0 788 153 0 0 chr3 14159026 14159144 -213365434 + FLAM_A SINE Alu 2 119 -14 259 214 36 0 chr3 14159174 14159230 -213365348 + AluJ/FLAM SINE Alu 26 83 -219 2078 117 0 7 chr3 14159363 14159662 -213364916 - AluSx SINE Alu -15 297 1 2227 103 0 0 chr3 14159860 14160162 -213364416 - AluSx SINE Alu -10 302 1 309 184 118 0 chr3 14160177 14160284 -213364294 - L1M LINE L1 -802 5344 5226 239 269 104 0 chr3 14160532 14160599 -213363979 + L2 LINE L2 3149 3222 -50 1570 203 7 7 chr3 14160698 14160999 -213363579 - AluJo SINE Alu -6 306 6 22 0 0 0 chr3 14161004 14161026 -213363552 + AT_rich Low_complexity Low_complexity 1 22 0 408 307 129 6 chr3 14161282 14161445 -213363133 + MIR3 SINE MIR 26 208 0 456 128 0 53 chr3 14161492 14161587 -213362991 - FLAM_A SINE Alu 0 143 54 928 115 0 0 chr3 14161616 14161746 -213362832 + FLAM_C SINE Alu 2 131 -2 1602 140 0 0 chr3 14161779 14162007 -213362571 + AluSg/x SINE Alu 85 312 0 2185 46 0 77 chr3 14162196 14162505 -213362073 + AluY SINE Alu 19 305 0 1435 184 4 16 chr3 14162855 14163105 -213361473 - AluJo SINE Alu -63 249 3 770 139 0 51 chr3 14163115 14163252 -213361326 - FLAM_C SINE Alu -2 131 2 2249 107 7 3 chr3 14163290 14163581 -213360997 - AluSx SINE Alu -20 292 1 370 103 0 0 chr3 14163818 14163876 -213360702 + Tigger2 DNA MER2_type 2430 2487 -231 420 94 62 0 chr3 14163876 14163973 -213360605 - AluSc SINE Alu 0 311 211 462 73 0 0 chr3 14163975 14164043 -213360535 + Alu SINE Alu 235 302 -9 2114 130 3 16 chr3 14164053 14164368 -213360210 + AluSx SINE Alu 1 311 -1 636 198 9 0 chr3 14164390 14164506 -213360072 - FLAM_A SINE Alu -16 117 1 2208 120 0 10 chr3 14164571 14164870 -213359708 - AluSq SINE Alu -17 296 1 415 216 23 89 chr3 14165108 14165367 -213359211 - AluSx SINE Alu -17 295 54 1898 90 22 109 chr3 14165629 14165950 -213358628 + AluSx SINE Alu 1 293 -19 21 0 0 0 chr3 14166553 14166574 -213358004 + AT_rich Low_complexity Low_complexity 1 21 0 185 244 22 0 chr3 14166581 14166626 -213357952 - L2 LINE L2 0 3313 3268 1041 166 16 21 chr3 14166697 14166711 -213357867 + AluJb SINE Alu 120 133 -179 2419 101 7 0 chr3 14166711 14167019 -213357559 + AluSg SINE Alu 1 310 0 1041 166 16 21 chr3 14167019 14167197 -213357381 + AluJb SINE Alu 133 311 -1 2336 103 0 0 chr3 14167627 14167927 -213356651 + AluY SINE Alu 1 300 -11 1823 158 3 14 chr3 14167944 14168236 -213356342 + AluJo SINE Alu 8 296 -16 774 185 51 6 chr3 14168288 14168445 -213356133 - MIR SINE MIR -78 184 21 2168 113 10 3 chr3 14169480 14169772 -213354806 - AluSx SINE Alu -18 294 1 2470 91 0 0 chr3 14169839 14170146 -213354432 - AluSx SINE Alu -5 307 1 586 106 0 0 chr3 14170179 14170264 -213354314 - AluSg1 SINE Alu -204 105 21 440 281 134 6 chr3 14170295 14170459 -213354119 - MIR SINE MIR -59 203 19 793 212 115 12 chr3 14170863 14171203 -213353375 + MLT1J2 LTR MaLR 1 427 -19 402 292 15 8 chr3 14171249 14171379 -213353199 - MIR3 SINE MIR -7 201 71 254 320 40 24 chr3 14171730 14171855 -213352723 + MLT1K LTR MaLR 69 195 -393 2267 112 0 0 chr3 14172066 14172361 -213352217 - AluSx SINE Alu -17 295 1 1864 117 4 4 chr3 14172370 14172626 -213351952 - AluSg SINE Alu -17 293 38 208 233 50 17 chr3 14173734 14173794 -213350784 - MIR SINE MIR -96 166 105 1357 209 23 36 chr3 14173794 14173963 -213350615 - AluJo SINE Alu -9 303 138 189 0 0 0 chr3 14173963 14173984 -213350594 + (TG)n Simple_repeat Simple_repeat 2 22 0 1357 209 23 36 chr3 14173984 14174115 -213350463 - AluJo SINE Alu -174 138 7 758 148 31 0 chr3 14174123 14174251 -213350327 - FLAM_C SINE Alu 0 133 2 599 261 186 36 chr3 14174856 14175243 -213349335 + L2 LINE L2 2869 3313 0 273 313 125 10 chr3 14175256 14175352 -213349226 - MIR SINE MIR -135 127 21 207 0 0 0 chr3 14175371 14175394 -213349184 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2130 98 0 4 chr3 14175394 14175671 -213348907 - AluSx SINE Alu -32 280 5 201 263 105 13 chr3 14176193 14176269 -213348309 - MIR3 SINE MIR -17 191 109 2208 146 56 30 chr3 14176715 14177147 -213347431 + LTR8A LTR ERV1 1 443 -284 2136 32 4 4 chr3 14177148 14177395 -213347183 + AluY SINE Alu 64 310 -1 2189 96 13 20 chr3 14177618 14177921 -213346657 - AluSx SINE Alu -11 301 1 1375 142 40 36 chr3 14177930 14178155 -213346423 - AluJb SINE Alu -23 289 64 25 31 0 0 chr3 14178160 14178192 -213346386 + AT_rich Low_complexity Low_complexity 1 32 0 362 136 0 61 chr3 14178192 14178258 -213346320 - AluJb SINE Alu -220 82 21 2232 122 0 7 chr3 14178281 14178584 -213345994 - AluSx SINE Alu -11 301 1 189 0 0 0 chr3 14179072 14179093 -213345485 + (CAGGC)n Simple_repeat Simple_repeat 5 25 0 2049 154 0 0 chr3 14179158 14179457 -213345121 - AluSx SINE Alu -13 299 1 1820 173 29 0 chr3 14179644 14179986 -213344592 + MLT1A1 LTR MaLR 13 364 -1 256 234 0 0 chr3 14180021 14180085 -213344493 + Charlie5 DNA MER1_type 2430 2493 -119 8072 59 7 21 chr3 14180145 14181128 -213343450 - LTR5 LTR ERVK 0 969 1 18418 43 2 2 chr3 14181128 14183422 -213341156 - HERVK LTR ERVK 0 7243 4951 * 21084 62 2 3 chr3 14183400 14186118 -213338460 - HERVK LTR ERVK -4528 2715 1 6839 82 11 2 chr3 14186118 14186966 -213337612 - LTR5 LTR ERVK 0 969 115 438 71 43 0 chr3 14186966 14187036 -213337542 - LTR5 LTR ERVK -896 73 1 1054 267 44 0 chr3 14187037 14187378 -213337200 + L1M4b LINE L1 594 949 -5910 432 274 0 0 chr3 14188560 14188673 -213335905 - L1MA7 LINE L1 -6 6285 6173 * 706 233 12 81 chr3 14188671 14188929 -213335649 + L1MA7 LINE L1 5893 6132 -159 2630 65 0 0 chr3 14189675 14189984 -213334594 + AluY SINE Alu 1 309 -2 2304 122 0 0 chr3 14189993 14190296 -213334282 + AluSg SINE Alu 1 303 -7 2132 124 3 22 chr3 14190435 14190749 -213333829 - AluSx SINE Alu -4 308 1 236 261 161 28 chr3 14191412 14191471 -213333107 + L2 LINE L2 2939 2989 -324 2519 96 6 0 chr3 14191471 14191824 -213332754 + THE1A LTR MaLR 1 355 0 236 261 161 28 chr3 14191824 14191944 -213332634 + L2 LINE L2 2989 3142 -171 1141 61 0 0 chr3 14193231 14193363 -213331215 - AluY SINE Alu -179 132 1 1967 132 51 0 chr3 14193363 14193659 -213330919 - AluSx SINE Alu -1 311 1 200 265 36 48 chr3 14194593 14194676 -213329902 + L2 LINE L2 3024 3105 -208 2569 54 0 0 chr3 14196332 14196626 -213327952 + AluY SINE Alu 1 294 -17 2266 115 0 10 chr3 14197522 14197835 -213326743 - AluSg SINE Alu 0 310 1 1888 132 24 17 chr3 14197857 14198153 -213326425 - AluJo SINE Alu -14 298 1 2190 124 3 0 chr3 14198219 14198518 -213326060 - AluSx SINE Alu -12 300 1 571 206 0 30 chr3 14198914 14199045 -213325533 - FLAM_A SINE Alu -6 127 1 2009 149 3 0 chr3 14199823 14200125 -213324453 + AluSx SINE Alu 1 303 -9 2179 134 0 6 chr3 14200130 14200444 -213324134 + AluSx SINE Alu 1 312 0 340 271 143 15 chr3 14200868 14201033 -213323545 + MIR SINE MIR 10 189 -53 682 221 30 43 chr3 14201185 14201294 -213323284 + LTR37A LTR ERV1 139 248 -178 1295 191 47 85 chr3 14201294 14201613 -213322965 - AluJo SINE Alu -5 307 1 682 221 30 43 chr3 14201613 14201734 -213322844 + LTR37A LTR ERV1 248 366 -60 2118 137 10 0 chr3 14201735 14202034 -213322544 - AluSx SINE Alu -10 302 1 581 159 0 0 chr3 14203007 14203114 -213321464 - L1MB7 LINE L1 -16 6168 6062 1476 186 4 8 chr3 14203170 14203422 -213321156 - AluJo SINE Alu -59 253 3 1666 168 14 50 chr3 14203432 14203658 -213320920 - L1MB7 LINE L1 -358 5826 5616 1730 180 3 26 chr3 14203658 14203963 -213320615 - AluJo SINE Alu -6 306 9 1666 168 14 50 chr3 14203963 14204099 -213320479 - L1MB7 LINE L1 -568 5616 5477 2232 116 3 3 chr3 14204111 14204414 -213320164 - AluSp SINE Alu -10 303 1 875 144 0 27 chr3 14204451 14204597 -213319981 - FLAM_C SINE Alu -1 142 1 939 154 46 36 chr3 14204622 14204666 -213319912 - L1MB7 LINE L1 -739 5435 5393 1913 174 0 3 chr3 14204666 14204959 -213319619 - AluJb SINE Alu -20 292 1 939 154 46 36 chr3 14204959 14205190 -213319388 - L1MB7 LINE L1 -781 5393 5162 2189 117 0 3 chr3 14205190 14205481 -213319097 + AluSx SINE Alu 1 290 -22 939 154 46 36 chr3 14205481 14205538 -213319040 - L1MB7 LINE L1 -1012 5162 5107 540 193 107 7 chr3 14205547 14205730 -213318848 - L1 LINE L1 -961 5185 4981 2423 52 3 43 chr3 14205814 14206119 -213318459 + AluY SINE Alu 1 293 -18 186 327 144 0 chr3 14206169 14206273 -213318305 + MIR SINE MIR 119 237 -25 1663 211 308 39 chr3 14206397 14206693 -213317885 + L1MC4 LINE L1 6725 6940 -1102 204 40 0 0 chr3 14206693 14206718 -213317860 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1712 165 18 18 chr3 14206718 14207032 -213317546 + AluJo SINE Alu 1 314 0 1663 211 308 39 chr3 14207032 14207217 -213317361 + L1MC4 LINE L1 6940 7074 -968 2031 144 0 7 chr3 14207217 14207508 -213317070 - AluJo SINE Alu -23 289 1 1663 211 308 39 chr3 14207508 14207569 -213317009 + L1MC4 LINE L1 7074 7117 -925 2484 80 0 6 chr3 14207569 14207881 -213316697 + AluY SINE Alu 1 310 -1 1663 211 308 39 chr3 14207881 14208259 -213316319 + L1MC4 LINE L1 7117 7898 -144 2022 146 0 0 chr3 14208668 14208949 -213315629 + AluSx SINE Alu 1 281 -31 2338 110 3 7 chr3 14208951 14209261 -213315317 + AluSx SINE Alu 1 309 -3 1908 141 16 19 chr3 14209855 14210168 -213314410 + AluSx SINE Alu 1 312 0 421 259 184 14 chr3 14210179 14210326 -213314252 - MER5A DNA MER1_type 0 189 18 450 326 67 5 chr3 14210494 14210687 -213313891 + MIR SINE MIR 20 224 -38 458 223 192 8 chr3 14210722 14210852 -213313726 + MER5A DNA MER1_type 30 183 -6 774 210 0 89 chr3 14211515 14211638 -213312940 + MER3 DNA MER1_type 7 105 -104 2124 85 22 63 chr3 14211638 14211954 -213312624 - AluSq SINE Alu -9 304 2 774 210 0 89 chr3 14211954 14212044 -213312534 + MER3 DNA MER1_type 105 201 -8 275 82 0 7 chr3 14212544 14212591 -213311987 + AluYa8 SINE Alu 156 194 -106 419 277 55 21 chr3 14212931 14213114 -213311464 + MIR SINE MIR 16 207 -55 790 155 0 0 chr3 14213114 14213243 -213311335 + FLAM_C SINE Alu 5 133 0 2397 105 0 0 chr3 14213274 14213578 -213311000 + AluSx SINE Alu 3 306 -6 2347 101 0 3 chr3 14213580 14213886 -213310692 + AluSg SINE Alu 3 307 -3 205 71 24 48 chr3 14213943 14213985 -213310593 + (TTTTTA)n Simple_repeat Simple_repeat 2 42 0 623 200 0 23 chr3 14214123 14214253 -213310325 + FLAM_A SINE Alu 16 142 0 228 182 0 0 chr3 14214264 14214308 -213310270 + (TA)n Simple_repeat Simple_repeat 1 44 0 1621 164 64 39 chr3 14214312 14214615 -213309963 + L1MB8 LINE L1 5643 5960 -218 2724 39 0 3 chr3 14214615 14214927 -213309651 + AluY SINE Alu 1 311 0 1621 164 64 39 chr3 14214927 14215013 -213309565 + L1MB8 LINE L1 5960 6042 -136 2473 84 0 0 chr3 14215018 14215329 -213309249 - AluY SINE Alu 0 311 1 2602 64 0 3 chr3 14215334 14215645 -213308933 - AluY SINE Alu -1 310 1 699 92 0 23 chr3 14215655 14215807 -213308771 - AluSg/x SINE Alu 0 309 118 1815 68 0 9 chr3 14215808 14216030 -213308548 - AluSq SINE Alu -93 220 1 183 80 0 0 chr3 14216033 14216058 -213308520 + (T)n Simple_repeat Simple_repeat 1 25 0 497 89 129 20 chr3 14216082 14216183 -213308395 + L1MB7 LINE L1 6073 6184 0 823 193 27 16 chr3 14216211 14216398 -213308180 - MER5A DNA MER1_type 0 189 1 396 293 114 0 chr3 14216406 14216573 -213308005 + MIR SINE MIR 77 262 0 708 247 163 45 chr3 14216619 14216975 -213307603 - L2 LINE L2 0 3313 2916 957 97 0 0 chr3 14217362 14217486 -213307092 - FLAM_C SINE Alu -1 142 19 275 307 91 0 chr3 14217500 14217588 -213306990 - L2 LINE L2 -38 3234 3139 181 237 0 0 chr3 14217599 14217637 -213306941 + MER5B DNA MER1_type 4 41 -137 2460 66 7 10 chr3 14217866 14218171 -213306407 + AluY SINE Alu 3 306 -5 2404 81 0 7 chr3 14218176 14218474 -213306104 + AluSq SINE Alu 1 296 -17 1788 163 53 0 chr3 14218556 14218839 -213305739 + AluJo SINE Alu 5 302 -10 1950 154 6 10 chr3 14218839 14219151 -213305427 + AluJo SINE Alu 1 311 -1 322 233 68 0 chr3 14219152 14219225 -213305353 + Charlie4 DNA MER1_type 1884 1961 0 1887 159 25 0 chr3 14219277 14219560 -213305018 - AluJo SINE Alu -20 292 3 653 185 0 0 chr3 14219560 14219668 -213304910 - FLAM_A SINE Alu -34 108 1 252 272 68 68 chr3 14219673 14219820 -213304758 + MER5A DNA MER1_type 15 161 -28 252 352 40 8 chr3 14219721 14219846 -213304732 - MER5A DNA MER1_type -48 141 13 597 318 76 14 chr3 14220080 14220303 -213304275 + MIR SINE MIR 23 259 -3 2163 96 0 4 chr3 14220310 14220582 -213303996 - AluSg SINE Alu -39 271 1 2122 112 13 23 chr3 14220582 14220887 -213303691 - AluSx SINE Alu -10 302 1 784 305 146 32 chr3 14221031 14221158 -213303420 + L2 LINE L2 2565 2676 -596 1444 159 94 32 chr3 14221158 14221435 -213303143 - AluJo SINE Alu -14 298 5 784 305 146 32 chr3 14221435 14221933 -213302645 + L2 LINE L2 2676 3260 -12 1263 134 9 22 chr3 14221992 14222223 -213302355 - L1MB3 LINE L1 -4 6179 5952 1041 239 46 0 chr3 14222247 14222527 -213302051 - L1MC4 LINE L1 -456 7586 7294 1994 104 11 25 chr3 14222534 14222812 -213301766 - AluSx SINE Alu -23 289 16 357 240 96 27 chr3 14223574 14223720 -213300858 + MIR SINE MIR 80 235 -27 200 315 112 11 chr3 14223847 14223936 -213300642 - L2 LINE L2 -2 3270 3173 36 0 0 0 chr3 14224058 14224094 -213300484 + AT_rich Low_complexity Low_complexity 1 36 0 2419 57 3 7 chr3 14224497 14224796 -213299782 - AluY SINE Alu -13 298 1 807 127 8 15 chr3 14224822 14224956 -213299622 - FLAM_C SINE Alu 0 133 1 242 309 149 52 chr3 14224970 14225372 -213299206 + L2 LINE L2 2818 3258 -14 2442 67 23 0 chr3 14227005 14227304 -213297274 - AluY SINE Alu -5 306 1 742 216 36 6 chr3 14227304 14227471 -213297107 - AluSg/x SINE Alu -5 307 136 207 299 11 11 chr3 14227492 14227579 -213296999 + L2 LINE L2 2302 2388 -926 1313 108 0 0 chr3 14228008 14228184 -213296394 - AluSg/x SINE Alu 0 312 137 2033 153 3 0 chr3 14228188 14228482 -213296096 - AluSx SINE Alu -17 295 1 1324 111 41 0 chr3 14229019 14229191 -213295387 + AluSq SINE Alu 1 179 -134 973 105 0 0 chr3 14229402 14229526 -213295052 + AluSg/x SINE Alu 172 295 -17 261 0 0 0 chr3 14229693 14229722 -213294856 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 426 141 0 0 chr3 14229723 14229787 -213294791 - AluSx SINE Alu -36 274 211 1121 85 35 0 chr3 14229788 14229929 -213294649 - AluSx SINE Alu -167 146 1 226 250 223 0 chr3 14230007 14230119 -213294459 + MIR SINE MIR 113 249 -13 203 152 0 0 chr3 14231188 14231221 -213293357 + (TG)n Simple_repeat Simple_repeat 1 33 0 328 306 113 0 chr3 14231560 14231720 -213292858 + MIR SINE MIR 78 255 -7 816 191 0 0 chr3 14231930 14232103 -213292475 + CT-rich Low_complexity Low_complexity 4 176 0 2543 63 0 0 chr3 14232294 14232593 -213291985 + AluY SINE Alu 1 299 -12 1192 192 161 4 chr3 14232602 14232862 -213291716 + AluJo SINE Alu 1 301 -1 2133 141 7 0 chr3 14233121 14233419 -213291159 + AluSx SINE Alu 3 302 -10 2258 109 3 10 chr3 14233419 14233722 -213290856 + AluSx SINE Alu 1 302 -10 236 240 67 67 chr3 14233778 14233882 -213290696 + MIR SINE MIR 86 189 -73 2333 102 7 0 chr3 14234194 14234499 -213290079 + AluSg SINE Alu 1 307 -3 226 283 58 50 chr3 14236010 14236130 -213288448 + MIR SINE MIR 7 127 -135 309 305 21 0 chr3 14236369 14236464 -213288114 - MIR SINE MIR -118 144 48 2257 98 0 7 chr3 14237000 14237296 -213287282 + AluSq SINE Alu 1 294 -19 2131 151 0 3 chr3 14237309 14237621 -213286957 + AluJo SINE Alu 1 311 -1 1967 157 0 0 chr3 14237672 14237952 -213286626 + AluJb SINE Alu 1 280 -32 447 100 0 0 chr3 14237952 14238022 -213286556 + (GGAA)n Simple_repeat Simple_repeat 3 72 0 2295 101 0 0 chr3 14238042 14238339 -213286239 + AluY SINE Alu 6 302 -9 2350 83 3 3 chr3 14238479 14238779 -213285799 + AluSp SINE Alu 14 313 0 215 313 111 63 chr3 14239020 14239178 -213285400 - MIR SINE MIR -70 192 29 288 200 17 0 chr3 14239655 14239715 -213284863 - MIR SINE MIR -60 148 88 683 193 0 0 chr3 14239759 14239905 -213284673 + FLAM_C SINE Alu 6 151 0 245 299 75 54 chr3 14240362 14240509 -213284069 + MIR SINE MIR 99 248 -14 225 94 0 0 chr3 14241841 14241873 -213282705 + (CA)n Simple_repeat Simple_repeat 2 33 0 239 301 125 7 chr3 14242103 14242239 -213282339 + MIR SINE MIR 108 259 -3 263 293 19 19 chr3 14242380 14242486 -213282092 - L2 LINE L2 -220 3052 2947 2260 134 0 3 chr3 14242582 14242889 -213281689 + AluSx SINE Alu 1 306 -6 2054 124 29 33 chr3 14242902 14243209 -213281369 + AluSg SINE Alu 1 306 -4 811 42 0 0 chr3 14244289 14244384 -213280194 - AluY SINE Alu -1 310 216 1925 139 20 41 chr3 14244476 14244820 -213279758 + MER1B DNA MER1_type 1 337 0 693 199 88 0 chr3 14245240 14245376 -213279202 + FRAM SINE Alu 8 155 -21 260 294 16 114 chr3 14245538 14245621 -213278957 - MIR SINE MIR -56 206 149 2241 114 3 7 chr3 14245621 14245962 -213278616 + AluSx SINE Alu 1 312 0 260 294 16 114 chr3 14245962 14246062 -213278516 - MIR SINE MIR -113 149 41 802 285 76 3 chr3 14246596 14246884 -213277694 + MER102b DNA MER1_type 33 341 0 399 273 107 0 chr3 14247449 14247599 -213276979 + MER91A DNA MER1_type 20 185 -11 214 193 18 18 chr3 14248007 14248064 -213276514 + (CCCCG)n Simple_repeat Simple_repeat 5 61 0 390 231 46 9 chr3 14251191 14251299 -213273279 - MIR SINE MIR -3 259 148 299 208 28 14 chr3 14251318 14251390 -213273188 + MIR SINE MIR 92 164 -98 683 209 52 119 chr3 14251390 14251550 -213273028 - L1ME LINE L1 -553 5609 5483 599 179 0 0 chr3 14251550 14251656 -213272922 - U6 snRNA snRNA 0 107 2 683 209 52 119 chr3 14251656 14251839 -213272739 - L1ME LINE L1 -679 5483 5289 2445 68 0 7 chr3 14251861 14252156 -213272422 + AluY SINE Alu 1 293 -18 353 260 39 10 chr3 14252156 14252260 -213272318 + MIR SINE MIR 153 259 -3 325 244 74 25 chr3 14252223 14252344 -213272234 - MIR SINE MIR -34 228 103 * 228 67 0 0 chr3 14253581 14253611 -213270967 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 1909 169 0 0 chr3 14253666 14253980 -213270598 + AluJb SINE Alu 1 314 0 2598 59 0 3 chr3 14254113 14254417 -213270161 - AluY SINE Alu -8 303 1 2366 99 7 0 chr3 14254442 14254744 -213269834 - AluSg SINE Alu -6 304 1 259 211 0 0 chr3 14254749 14254801 -213269777 - L1ME3 LINE L1 -65 6097 6046 670 272 154 59 chr3 14254996 14255386 -213269192 - L2 LINE L2 0 3313 2887 2524 58 0 7 chr3 14255387 14255695 -213268883 + AluY SINE Alu 1 306 -5 2168 113 10 3 chr3 14255762 14256054 -213268524 + AluSx SINE Alu 1 294 -18 774 185 51 6 chr3 14257090 14257247 -213267331 + MIR SINE MIR 21 184 -78 1823 158 3 14 chr3 14257299 14257591 -213266987 - AluJo SINE Alu -16 296 8 2336 103 0 0 chr3 14257608 14257908 -213266670 - AluY SINE Alu -11 300 1 1041 166 16 21 chr3 14258338 14258516 -213266062 - AluJb SINE Alu -1 311 133 2410 101 7 0 chr3 14258516 14258823 -213265755 - AluSg SINE Alu -1 309 1 1041 166 16 21 chr3 14258823 14258837 -213265741 - AluJb SINE Alu -179 133 120 185 244 22 0 chr3 14258908 14258953 -213265625 + L2 LINE L2 3268 3313 0 21 0 0 0 chr3 14258960 14258981 -213265597 + AT_rich Low_complexity Low_complexity 1 21 0 2467 91 3 0 chr3 14259103 14259411 -213265167 - AluSc SINE Alu 0 309 1 248 257 0 43 chr3 14259539 14259609 -213264969 + L2 LINE L2 3206 3272 0 299 271 0 0 chr3 14259613 14259683 -213264895 + L2 LINE L2 3203 3272 0 304 268 0 0 chr3 14259686 14259757 -213264821 + L2 LINE L2 3201 3271 -1 2337 116 0 0 chr3 14259770 14260071 -213264507 + AluSg SINE Alu 3 303 -7 196 286 0 32 chr3 14260086 14260149 -213264429 + L2 LINE L2 3205 3265 -7 2265 109 0 26 chr3 14260149 14260453 -213264125 + AluSx SINE Alu 1 296 -16 562 222 49 69 chr3 14261247 14261450 -213263128 + MIR SINE MIR 64 262 0 2342 64 0 58 chr3 14261532 14261845 -213262733 + AluY SINE Alu 1 295 -16 476 242 202 40 chr3 14261845 14262093 -213262485 - L2 LINE L2 -1 3312 3025 2350 90 0 3 chr3 14263982 14264282 -213260296 - AluSg1 SINE Alu -10 299 1 451 243 125 7 chr3 14264484 14264620 -213259958 - MIR SINE MIR -22 240 89 225 0 0 0 chr3 14264699 14264724 -213259854 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2251 71 0 14 chr3 14264727 14265007 -213259571 - AluY SINE Alu -35 276 1 448 307 39 20 chr3 14267120 14267273 -213257305 + MIR SINE MIR 8 163 -99 1549 271 175 17 chr3 14267520 14268425 -213256153 - L2 LINE L2 -68 3245 2196 362 196 0 72 chr3 14268603 14268700 -213255878 + MIR SINE MIR 103 192 -70 294 279 19 19 chr3 14268729 14268833 -213255745 + MIR3 SINE MIR 83 186 -22 224 218 55 0 chr3 14268865 14268920 -213255658 - L2 LINE L2 -29 3243 3186 330 237 0 41 chr3 14268939 14269050 -213255528 + L1MC4 LINE L1 1996 6983 -1339 3166 156 70 15 chr3 14269054 14269709 -213254869 - L1MB5 LINE L1 -9 6165 5475 397 208 140 56 chr3 14269751 14269929 -213254649 - MIR SINE MIR -61 201 9 252 248 106 44 chr3 14270270 14270383 -213254195 + MIR3 SINE MIR 54 173 -35 327 250 0 12 chr3 14270629 14270713 -213253865 + MIR SINE MIR 44 126 -82 2453 74 0 3 chr3 14271059 14271358 -213253220 + AluY SINE Alu 1 298 -13 1412 148 92 8 chr3 14271367 14271617 -213252961 + AluJo SINE Alu 10 280 -32 423 0 0 0 chr3 14271622 14271669 -213252909 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 348 271 75 28 chr3 14271679 14271786 -213252792 + L1ME4a LINE L1 5738 5849 -272 11860 45 6 11 chr3 14271813 14273206 -213251372 - SVA Other Other 0 1386 1 298 98 16 33 chr3 14273207 14273268 -213251310 + (GGGAGA)n Simple_repeat Simple_repeat 1 60 0 203 430 0 0 chr3 14273764 14273850 -213250728 - L2 LINE L2 -76 3196 3111 237 223 11 106 chr3 14273924 14273990 -213250588 - L2 LINE L2 -212 3060 3004 2653 62 0 0 chr3 14273990 14274298 -213250280 + AluY SINE Alu 1 308 -3 237 223 11 106 chr3 14274298 14274325 -213250253 - L2 LINE L2 -268 3004 2976 199 139 13 177 chr3 14274309 14274388 -213250190 + MIR3 SINE MIR 10 75 -133 * 775 224 30 145 chr3 14274388 14274464 -213250114 - MLT1J LTR MaLR 0 495 412 2264 105 0 20 chr3 14274464 14274770 -213249808 + AluSq SINE Alu 1 300 -13 775 224 30 145 chr3 14274770 14275197 -213249381 - MLT1J LTR MaLR -83 412 1 705 327 9 0 chr3 14276345 14276556 -213248022 - MIR SINE MIR -12 250 38 312 229 46 76 chr3 14276586 14276717 -213247861 + MIR SINE MIR 64 190 -72 335 329 79 6 chr3 14277707 14277871 -213246707 + MIR SINE MIR 87 262 0 2199 74 19 32 chr3 14278303 14278615 -213245963 - AluSg SINE Alu -2 308 1 371 256 234 0 chr3 14280553 14280690 -213243888 + MIR SINE MIR 94 262 0 185 256 0 0 chr3 14280723 14280766 -213243812 + MER5B DNA MER1_type 1 43 -135 1055 163 28 0 chr3 14280809 14280987 -213243591 - AluJb SINE Alu -10 302 120 254 280 47 19 chr3 14282759 14282866 -213241712 + L2 LINE L2 2697 2806 -508 2321 110 0 0 chr3 14282992 14283282 -213241296 - AluSx SINE Alu -22 290 1 394 234 140 9 chr3 14283363 14283470 -213241108 + MIR SINE MIR 46 166 -96 321 213 32 32 chr3 14284246 14284340 -213240238 - MIR SINE MIR -119 143 50 243 61 0 0 chr3 14284623 14284656 -213239922 + (TCC)n Simple_repeat Simple_repeat 2 34 0 401 236 0 0 chr3 14285042 14285131 -213239447 - L3 LINE CR1 -66 1511 1423 331 257 81 62 chr3 14285165 14285248 -213239330 - L1MC4a LINE L1 -124 5997 5917 2135 69 87 0 chr3 14285248 14285523 -213239055 - AluSx SINE Alu -13 299 1 331 257 81 62 chr3 14285523 14285711 -213238867 - L1MC4a LINE L1 -204 5917 5719 1298 169 31 63 chr3 14285968 14286222 -213238356 + AluJb SINE Alu 1 246 -66 310 86 69 0 chr3 14286289 14286372 -213238206 + AluJb SINE Alu 241 327 0 1721 149 3 57 chr3 14286388 14286704 -213237874 + AluJo SINE Alu 13 311 -1 692 295 189 19 chr3 14286918 14287400 -213237178 - L3 LINE CR1 -291 1286 723 460 287 174 0 chr3 14288029 14288224 -213236354 - MIR SINE MIR -14 248 20 1031 114 0 0 chr3 14288245 14288377 -213236201 - AluSq/x SINE Alu -180 132 1 2231 124 0 0 chr3 14288923 14289222 -213235356 - AluSx SINE Alu -13 299 1 586 249 147 62 chr3 14289272 14289694 -213234884 - HAL1 LINE L1 -72 2435 1978 565 284 43 34 chr3 14289758 14290110 -213234468 + L1MC5 LINE L1 7428 7782 -179 2420 91 0 0 chr3 14290172 14290469 -213234109 + AluSx SINE Alu 1 297 -15 1726 176 20 16 chr3 14290493 14290799 -213233779 - AluJb SINE Alu -5 307 1 1860 160 14 10 chr3 14290801 14291095 -213233483 - AluJo SINE Alu -17 295 1 708 156 117 7 chr3 14291095 14291249 -213233329 - L1MB8 LINE L1 -347 5831 5661 1077 117 0 60 chr3 14291251 14291487 -213233091 - AluSc SINE Alu 0 309 1 2459 90 0 0 chr3 14291497 14291797 -213232781 - AluSg SINE Alu -10 300 1 600 136 18 36 chr3 14291799 14291909 -213232669 - L1MB8 LINE L1 -509 5669 5562 280 333 54 0 chr3 14291915 14292044 -213232534 - MIR3 SINE MIR -71 137 2 303 232 0 12 chr3 14292245 14292327 -213232251 - L1MB8 LINE L1 -9 6169 6089 386 358 43 47 chr3 14292341 14292595 -213231983 + L2 LINE L2 2876 3128 -144 1741 83 0 9 chr3 14292598 14292826 -213231752 - AluY SINE Alu -6 305 80 465 260 80 0 chr3 14293323 14293473 -213231105 + MLT1K LTR MaLR 419 580 -8 1237 107 122 0 chr3 14293666 14293871 -213230707 - MER30 DNA MER1_type 0 230 1 1794 79 0 0 chr3 14294145 14294360 -213230218 - AluSq SINE Alu -16 297 83 843 150 0 0 chr3 14294874 14295007 -213229571 + AluJo SINE Alu 1 133 -169 255 31 0 0 chr3 14295930 14295962 -213228616 + (TA)n Simple_repeat Simple_repeat 2 33 0 2293 100 0 13 chr3 14295962 14296263 -213228315 - AluSg1 SINE Alu -12 297 1 493 293 28 83 chr3 14296743 14296996 -213227582 - MIR SINE MIR -8 254 16 532 254 67 6 chr3 14297444 14297609 -213226969 + AluJo SINE Alu 137 311 -1 1655 156 0 50 chr3 14297620 14297903 -213226675 + AluJo SINE Alu 9 277 -35 341 0 45 0 chr3 14297904 14297948 -213226630 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 2726 179 74 59 chr3 14297993 14298710 -213225868 - L1MB7 LINE L1 -17 6167 5440 2439 88 0 0 chr3 14298711 14299006 -213225572 - AluSg SINE Alu -15 295 1 1893 99 3 128 chr3 14299015 14299359 -213225219 - AluSg1 SINE Alu -8 301 1 969 214 37 7 chr3 14299369 14299640 -213224938 - L1MB4 LINE L1 0 6180 5902 718 186 164 0 chr3 14299667 14299807 -213224771 - FRAM SINE Alu -19 157 1 4003 195 71 38 chr3 14299847 14300413 -213224165 - L1MB4 LINE L1 -1144 5002 4456 2302 106 0 0 chr3 14300413 14300705 -213223873 - AluSc SINE Alu -17 292 1 4003 195 71 38 chr3 14300705 14301129 -213223449 - L1MB4 LINE L1 -1690 4456 3974 2140 132 0 10 chr3 14301129 14301297 -213223281 - AluSx SINE Alu -11 301 136 2246 105 10 29 chr3 14301297 14301610 -213222968 - AluSq SINE Alu -6 307 1 2140 132 0 10 chr3 14301610 14301745 -213222833 - AluSx SINE Alu -176 136 1 4003 195 71 38 chr3 14301745 14301797 -213222781 - L1MB4 LINE L1 -2172 3974 3925 285 240 184 22 chr3 14302373 14302476 -213222102 + MIR SINE MIR 44 157 -94 548 278 57 44 chr3 14302524 14302751 -213221827 - MIR SINE MIR 0 262 33 2354 94 0 0 chr3 14303413 14303699 -213220879 - AluSx SINE Alu -17 295 10 198 0 0 0 chr3 14304948 14304970 -213219608 + (A)n Simple_repeat Simple_repeat 1 22 0 2088 115 20 10 chr3 14304974 14305270 -213219308 + AluSx SINE Alu 1 299 -13 2387 76 14 0 chr3 14305318 14305609 -213218969 - AluY SINE Alu -16 295 1 211 0 28 56 chr3 14305661 14305697 -213218881 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2355 68 0 0 chr3 14305699 14305979 -213218599 - AluY SINE Alu -31 280 1 611 137 0 0 chr3 14305981 14306076 -213218502 - AluJo/FLAM SINE Alu -183 129 35 2487 62 0 0 chr3 14307053 14307342 -213217236 - AluY SINE Alu -21 290 2 2425 98 0 13 chr3 14307343 14307650 -213216928 - AluSx SINE Alu -9 303 1 646 289 100 48 chr3 14307650 14308016 -213216562 - L1MC/D LINE L1 -1985 5823 5427 2446 92 0 0 chr3 14308016 14308322 -213216256 + AluY SINE Alu 1 306 -5 646 289 100 48 chr3 14308322 14308415 -213216163 - L1MC/D LINE L1 -2381 5427 5340 2101 135 6 13 chr3 14308582 14308894 -213215684 - AluSx SINE Alu -2 310 1 1691 150 6 72 chr3 14310514 14310834 -213213744 + AluJo SINE Alu 1 299 -13 2166 104 24 3 chr3 14311033 14311321 -213213257 + AluSg SINE Alu 1 293 -17 198 33 33 0 chr3 14311321 14311351 -213213227 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 383 167 83 93 chr3 14311650 14311758 -213212820 + MER5C DNA MER1_type 18 124 -200 475 115 0 73 chr3 14311788 14311884 -213212694 + MER5C DNA MER1_type 236 324 0 536 285 22 0 chr3 14311885 14312022 -213212556 + MIR SINE MIR 4 143 -119 299 326 129 85 chr3 14312029 14312477 -213212101 - L2 LINE L2 0 3272 2805 2132 120 0 0 chr3 14312498 14312797 -213211781 - AluSx SINE Alu -13 299 1 1746 148 0 69 chr3 14312852 14313170 -213211408 - AluJb SINE Alu -16 296 1 290 281 91 16 chr3 14313259 14313380 -213211198 + L2 LINE L2 3160 3289 -24 1493 125 9 133 chr3 14313395 14313740 -213210838 + AluJo SINE Alu 1 302 -10 207 0 0 0 chr3 14314072 14314095 -213210483 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 808 165 0 0 chr3 14314095 14314216 -213210362 - AluJb SINE Alu -190 122 2 1996 107 3 17 chr3 14314432 14314730 -213209848 - AluSx SINE Alu -16 296 3 1982 109 3 7 chr3 14314742 14315036 -213209542 - AluSg SINE Alu -17 293 1 1657 173 10 7 chr3 14315097 14315392 -213209186 + AluJb SINE Alu 10 305 -7 225 222 0 0 chr3 14315576 14315630 -213208948 + MER20B DNA MER1_type 4 57 -726 1808 164 0 0 chr3 14315632 14315930 -213208648 - AluSx SINE Alu -14 298 1 1141 129 16 5 chr3 14315979 14316165 -213208413 + AluSg/x SINE Alu 105 292 -18 240 318 119 28 chr3 14316299 14316475 -213208103 + MIR SINE MIR 1 192 -70 2383 67 0 10 chr3 14316563 14316862 -213207716 - AluSc SINE Alu -13 296 1 2269 80 0 7 chr3 14316873 14317173 -213207405 - AluY SINE Alu -13 298 1 361 265 120 8 chr3 14317388 14317505 -213207073 + MIR SINE MIR 117 246 -16 1140 228 100 6 chr3 14317550 14317910 -213206668 + MER113 DNA MER1_type? 2 395 -126 460 139 163 0 chr3 14317915 14318001 -213206577 - FLAM_A SINE Alu -15 127 28 2038 99 7 0 chr3 14318096 14318412 -213206166 + AluSq SINE Alu 1 318 0 546 292 109 10 chr3 14318728 14318920 -213205658 - MIR SINE MIR -14 248 38 2248 69 7 3 chr3 14319418 14319724 -213204854 + AluY SINE Alu 3 309 -2 374 88 0 27 chr3 14321751 14321966 -213202612 + AluSx SINE Alu 1 292 -8 24 0 0 0 chr3 14322241 14322265 -213202313 + AT_rich Low_complexity Low_complexity 1 24 0 224 241 0 0 chr3 14322407 14322461 -213202117 + T-rich Low_complexity Low_complexity 1 54 0 256 105 53 0 chr3 14322461 14322499 -213202079 - LTR23 LTR ERV1 -78 359 320 2168 91 24 0 chr3 14322504 14322802 -213201776 - AluYb8 SINE Alu -13 305 1 1631 176 0 52 chr3 14322803 14322988 -213201590 - AluJo SINE Alu 0 312 119 180 0 0 0 chr3 14322988 14323008 -213201570 + (TTAG)n Simple_repeat Simple_repeat 2 21 0 1852 112 18 14 chr3 14323008 14323294 -213201284 - AluSq SINE Alu -26 287 1 2311 46 7 0 chr3 14323300 14323609 -213200969 - AluY SINE Alu 0 311 1 1631 176 0 52 chr3 14323609 14323743 -213200835 - AluJo SINE Alu -197 115 1 809 153 21 7 chr3 14324016 14324160 -213200418 - FRAM SINE Alu -30 146 1 2080 133 42 21 chr3 14324241 14324571 -213200007 - MER1B DNA MER1_type 0 337 1 1804 131 0 55 chr3 14324578 14324907 -213199671 - AluSx SINE Alu -1 311 1 517 271 74 63 chr3 14325454 14325723 -213198855 - L3 LINE CR1 -682 895 624 198 355 32 21 chr3 14326362 14326455 -213198123 + MIR SINE MIR 32 125 -83 189 283 0 33 chr3 14326889 14326949 -213197629 + MIR3 SINE MIR 13 70 -138 2095 112 0 3 chr3 14327057 14327353 -213197225 - AluSq SINE Alu -18 295 1 1105 133 0 6 chr3 14328130 14328303 -213196275 - AluSg/x SINE Alu -24 288 117 227 191 85 0 chr3 14328417 14328464 -213196114 - L2 LINE L2 -1 3271 3221 1787 139 0 20 chr3 14328665 14328960 -213195618 + AluJb SINE Alu 23 311 -1 24 0 0 0 chr3 14329107 14329131 -213195447 + AT_rich Low_complexity Low_complexity 1 24 0 315 329 12 0 chr3 14329317 14329399 -213195179 - L1MC4a LINE L1 -1911 5897 5815 1501 161 38 3 chr3 14329413 14329704 -213194874 - L1MB4 LINE L1 -21 6159 5859 961 83 0 0 chr3 14329719 14329851 -213194727 - AluY SINE Alu -179 132 1 1923 180 40 59 chr3 14329851 14329929 -213194649 - L1MB4 LINE L1 -308 5872 5794 1979 113 0 0 chr3 14329929 14330241 -213194337 - AluSx SINE Alu 0 312 1 1923 180 40 59 chr3 14330241 14330564 -213194014 - L1MB4 LINE L1 -386 5794 5466 2239 71 0 0 chr3 14330564 14330888 -213193690 + AluY SINE Alu 1 324 0 1923 180 40 59 chr3 14330888 14330915 -213193663 - L1MB4 LINE L1 -714 5466 5440 928 171 0 6 chr3 14330915 14331073 -213193505 - FRAM SINE Alu -9 157 1 1923 180 40 59 chr3 14331073 14331232 -213193346 - L1MB4 LINE L1 -740 5440 5280 1423 229 0 3 chr3 14331232 14331537 -213193041 - AluJb SINE Alu -8 304 1 1923 180 40 59 chr3 14331537 14331718 -213192860 - L1MB4 LINE L1 -900 5280 5148 1990 133 3 0 chr3 14331718 14332018 -213192560 - AluSc SINE Alu -8 301 1 1923 180 40 59 chr3 14332018 14332061 -213192517 - L1MB4 LINE L1 -1032 5148 5106 2055 101 9 28 chr3 14332502 14332819 -213191759 - AluSx SINE Alu -1 311 1 2278 188 77 62 chr3 14333499 14333759 -213190819 - L1MB4 LINE L1 -1015 5131 4876 2246 64 0 55 chr3 14333759 14334071 -213190507 + AluY SINE Alu 1 295 -16 2278 188 77 62 chr3 14334071 14334195 -213190383 - L1MB4 LINE L1 -1270 4876 4755 2089 103 0 7 chr3 14334195 14334485 -213190093 + AluY SINE Alu 1 288 -23 2278 188 77 62 chr3 14334485 14334749 -213189829 - L1MB4 LINE L1 -1391 4755 4472 1597 188 11 0 chr3 14334750 14335065 -213189513 - AluJb SINE Alu 0 312 1 264 182 15 30 chr3 14335928 14335994 -213188584 + AluS SINE Alu 5 69 -234 1175 169 31 63 chr3 14336436 14336690 -213187888 + AluJb SINE Alu 1 246 -66 329 86 69 0 chr3 14336757 14336840 -213187738 + AluJb SINE Alu 241 327 0 1575 149 3 57 chr3 14336856 14337172 -213187406 + AluJo SINE Alu 13 311 -1 784 282 196 19 chr3 14337403 14337868 -213186710 - L3 LINE CR1 -308 1269 723 505 261 179 5 chr3 14338497 14338692 -213185886 - MIR SINE MIR -14 248 20 961 114 0 0 chr3 14338713 14338845 -213185733 - AluSq/x SINE Alu -181 132 1 2071 124 0 0 chr3 14339391 14339690 -213184888 - AluSx SINE Alu -13 299 1 637 230 152 66 chr3 14339740 14340162 -213184416 - HAL1 LINE L1 -72 2435 1978 555 276 45 37 chr3 14340226 14340578 -213184000 + L1MC5 LINE L1 7428 7782 -179 2261 91 0 0 chr3 14340640 14340937 -213183641 + AluSx SINE Alu 1 297 -15 1567 157 21 18 chr3 14340982 14341262 -213183316 - AluJb SINE Alu -26 286 6 1704 154 14 11 chr3 14341277 14341563 -213183015 - AluJo SINE Alu -25 287 1 747 156 117 7 chr3 14341563 14341717 -213182861 - L1MB8 LINE L1 -347 5831 5661 1001 110 0 61 chr3 14341719 14341952 -213182626 - AluSc SINE Alu 0 309 4 2074 108 3 13 chr3 14341965 14342270 -213182308 - AluSx SINE Alu -10 302 1 2132 113 0 0 chr3 14342280 14342580 -213181998 - AluSq SINE Alu -13 300 1 307 102 0 20 chr3 14342581 14342630 -213181948 - L1PB1 LINE L1 -178 5973 5926 2169 92 3 3 chr3 14342801 14343093 -213181485 + AluSx SINE Alu 1 292 -20 2226 75 0 0 chr3 14343403 14343727 -213180851 + AluY SINE Alu 1 324 0 928 171 0 6 chr3 14343754 14343912 -213180666 - FRAM SINE Alu -9 157 1 1111 157 48 56 chr3 14343916 14344071 -213180507 - L1MB8 LINE L1 -699 5481 5326 1423 229 0 3 chr3 14344071 14344376 -213180202 - AluJb SINE Alu -8 304 1 1111 157 48 56 chr3 14344376 14344557 -213180021 - L1MB8 LINE L1 -854 5326 5148 1990 133 3 0 chr3 14344557 14344857 -213179721 - AluSc SINE Alu -8 301 1 1111 157 48 56 chr3 14344857 14344900 -213179678 - L1MB8 LINE L1 -1032 5148 5106 2055 101 9 28 chr3 14345341 14345658 -213178920 - AluSx SINE Alu -1 311 1 2278 188 77 62 chr3 14346338 14346598 -213177980 - L1MB8 LINE L1 -1015 5131 4876 2246 64 0 55 chr3 14346598 14346910 -213177668 + AluY SINE Alu 1 295 -16 2278 188 77 62 chr3 14346910 14347034 -213177544 - L1MB8 LINE L1 -1270 4876 4755 2089 103 0 7 chr3 14347034 14347324 -213177254 + AluY SINE Alu 1 288 -23 2278 188 77 62 chr3 14347324 14347588 -213176990 - L1MB8 LINE L1 -1391 4755 4472 1597 188 11 0 chr3 14347589 14347904 -213176674 - AluJb SINE Alu 0 312 1 854 116 148 19 chr3 14348346 14348501 -213176077 + AluSg/x SINE Alu 119 293 -16 1858 154 0 10 chr3 14348509 14348807 -213175771 + AluSx SINE Alu 7 301 -11 1982 83 3 73 chr3 14348856 14349169 -213175409 - AluSg SINE Alu -19 291 1 2222 110 0 0 chr3 14349448 14349756 -213174822 - AluSc SINE Alu 0 309 2 1273 160 5 0 chr3 14349791 14349991 -213174587 - AluJb SINE Alu -25 287 87 1791 175 0 0 chr3 14350033 14350325 -213174253 + AluJo SINE Alu 1 292 -20 817 289 174 60 chr3 14351547 14352432 -213172146 + L2 LINE L2 2233 3232 -40 1831 163 0 0 chr3 14352489 14352784 -213171794 + AluJb SINE Alu 1 295 -17 261 174 0 0 chr3 14352784 14352830 -213171748 - MLT2D LTR ERVL -365 49 4 1481 216 24 0 chr3 14352854 14353150 -213171428 + L1ME LINE L1 5374 5676 -488 2299 89 0 0 chr3 14353151 14353454 -213171124 + AluSx SINE Alu 1 303 -9 2130 122 0 3 chr3 14353981 14354284 -213170294 + AluSx SINE Alu 1 302 -10 2296 65 3 19 chr3 14354412 14354722 -213169856 + AluSp SINE Alu 1 305 -8 384 313 27 34 chr3 14355005 14355152 -213169426 - MIR SINE MIR -19 243 98 2039 104 0 38 chr3 14355194 14355512 -213169066 - AluSp SINE Alu -7 306 1 2228 74 0 17 chr3 14355688 14355987 -213168591 + AluSp SINE Alu 1 294 -19 1286 137 19 5 chr3 14356317 14356522 -213168056 - AluJb SINE Alu -11 301 94 331 273 244 13 chr3 14357241 14357549 -213167029 - L2 LINE L2 -9 3304 2926 2091 145 69 57 chr3 14358263 14358322 -213166256 + MER65A LTR ERV1 1 58 -387 1877 104 46 7 chr3 14358322 14358602 -213165976 + AluSx SINE Alu 1 291 -21 2091 145 69 57 chr3 14358602 14358949 -213165629 + MER65A LTR ERV1 58 412 -33 2279 99 0 3 chr3 14358950 14359263 -213165315 - AluSx SINE Alu 0 312 1 2414 56 3 0 chr3 14359269 14359575 -213165003 - AluY SINE Alu -4 307 1 1012 70 8 0 chr3 14359575 14359704 -213164874 - AluSq/x SINE Alu -182 130 1 25 0 0 0 chr3 14359705 14359730 -213164848 + AT_rich Low_complexity Low_complexity 1 25 0 1905 150 0 3 chr3 14359766 14360066 -213164512 - AluSx SINE Alu -13 299 1 2061 70 3 14 chr3 14360430 14360715 -213163863 + AluY SINE Alu 1 282 -29 1268 69 6 23 chr3 14360541 14360715 -213163863 + AluY SINE Alu 112 308 0 235 0 0 0 chr3 14360715 14360741 -213163837 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 1191 287 76 12 chr3 14360911 14361343 -213163235 - MLT1J LTR MaLR -50 461 2 2493 39 19 26 chr3 14361718 14362025 -213162553 - AluY SINE Alu -6 305 1 965 168 38 32 chr3 14362082 14362267 -213162311 + MER5A DNA MER1_type 4 189 0 2492 75 3 3 chr3 14362270 14362577 -213162001 + AluSp SINE Alu 1 307 -6 2236 112 3 6 chr3 14362587 14362899 -213161679 + AluSx SINE Alu 1 311 -1 953 122 0 98 chr3 14362899 14363087 -213161491 + AluSg/x SINE Alu 132 303 0 1018 175 0 63 chr3 14363769 14363975 -213160603 - AluJo SINE Alu 0 312 120 823 148 65 13 chr3 14363975 14364130 -213160448 - MER46A DNA MER2_type -61 175 13 512 223 76 38 chr3 14364573 14364730 -213159848 - MER103 DNA DNA -3 163 1 2020 120 7 48 chr3 14365333 14365505 -213159073 - AluSx SINE Alu -16 296 118 246 32 0 0 chr3 14365505 14365536 -213159042 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2365 74 3 0 chr3 14365536 14365820 -213158758 - AluSp SINE Alu -28 285 1 2020 120 7 48 chr3 14365820 14365955 -213158623 - AluSx SINE Alu -192 120 1 596 310 101 39 chr3 14365962 14366415 -213158163 - L2 LINE L2 -17 3296 2737 204 365 56 24 chr3 14366928 14367054 -213157524 + MIR SINE MIR 23 152 -56 * 523 224 35 9 chr3 14367018 14367134 -213157444 - MIR SINE MIR -106 156 38 1235 140 0 0 chr3 14367263 14367441 -213157137 - AluSg/x SINE Alu 0 310 133 356 241 12 18 chr3 14367734 14367845 -213156733 - MLT1I LTR MaLR 0 409 318 2502 51 0 3 chr3 14368007 14368302 -213156276 + AluY SINE Alu 1 294 -17 589 250 36 30 chr3 14368441 14368727 -213155851 + L2 LINE L2 2783 3063 -250 189 0 0 0 chr3 14368873 14368894 -213155684 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 400 48 32 0 chr3 14369018 14369081 -213155497 + (TG)n Simple_repeat Simple_repeat 1 65 0 1892 98 0 0 chr3 14369670 14369906 -213154672 + AluSx SINE Alu 40 275 -37 1887 147 0 60 chr3 14370316 14370635 -213153943 + AluJb SINE Alu 1 300 -12 1844 146 28 0 chr3 14372269 14372557 -213152021 + AluJo SINE Alu 1 296 -16 199 263 0 35 chr3 14372586 14372643 -213151935 - MIR SINE MIR -100 162 108 2349 103 0 3 chr3 14373105 14373407 -213151171 - AluSc SINE Alu -8 301 1 1930 168 26 8 chr3 14373410 14373791 -213150787 + L1MB4 LINE L1 5792 6179 -1 23 0 0 0 chr3 14374074 14374097 -213150481 + AT_rich Low_complexity Low_complexity 1 23 0 1780 125 4 7 chr3 14374155 14374434 -213150144 + AluY SINE Alu 1 278 -33 2402 60 0 3 chr3 14375058 14375341 -213149237 + AluY SINE Alu 22 303 -8 267 313 114 30 chr3 14375365 14375531 -213149047 + MIR SINE MIR 48 227 -35 2180 118 0 7 chr3 14375543 14375840 -213148738 - AluSg SINE Alu -15 295 1 2131 108 3 7 chr3 14376380 14376676 -213147902 - AluSc SINE Alu -14 295 1 2235 118 7 0 chr3 14376726 14377031 -213147547 - AluSx SINE Alu -5 307 1 1733 169 0 24 chr3 14377192 14377488 -213147090 + AluJo SINE Alu 17 305 -7 2880 3 0 0 chr3 14377677 14377980 -213146598 - AluYa5 SINE Alu -8 303 1 454 220 232 24 chr3 14378025 14378049 -213146529 - MLT1H LTR MaLR -29 520 502 2025 110 35 14 chr3 14378049 14378339 -213146239 - AluSx SINE Alu -16 296 1 454 220 232 24 chr3 14378339 14378467 -213146111 - MLT1H LTR MaLR -47 502 402 2019 157 3 3 chr3 14378467 14378779 -213145799 - AluJo SINE Alu 0 312 1 454 220 232 24 chr3 14378779 14378998 -213145580 - MLT1H LTR MaLR -147 402 20 204 314 157 33 chr3 14379740 14379861 -213144717 + L2 LINE L2 3136 3271 -1 1963 106 50 14 chr3 14380238 14380548 -213144030 - AluSq SINE Alu 0 313 1 481 259 113 8 chr3 14380802 14381041 -213143537 - L1ME4a LINE L1 -38 6083 5820 1765 176 20 7 chr3 14381154 14381449 -213143129 + AluJo SINE Alu 6 304 -8 2327 101 0 7 chr3 14381452 14381750 -213142828 + AluSx SINE Alu 1 296 -16 239 200 0 0 chr3 14381861 14381906 -213142672 - Alu SINE Alu -3 130 86 1185 106 0 0 chr3 14382358 14382450 -213142128 + (TGGG)n Simple_repeat Simple_repeat 1 272 0 1185 106 0 0 chr3 14382450 14382630 -213141948 + (TGGG)n Simple_repeat Simple_repeat 1 180 0 291 196 65 33 chr3 14382879 14382971 -213141607 - MIR SINE MIR -108 154 60 2322 120 0 0 chr3 14382993 14383302 -213141276 - AluSx SINE Alu -3 309 1 433 181 81 128 chr3 14383670 14383819 -213140759 - MER103 DNA DNA -1 165 24 274 219 78 0 chr3 14383916 14383980 -213140598 + L2 LINE L2 3153 3221 -51 223 316 10 41 chr3 14384044 14384142 -213140436 + (TGGA)n Simple_repeat Simple_repeat 1 95 0 679 261 101 20 chr3 14384211 14384410 -213140168 - MER58C DNA MER1_type 0 215 1 1900 102 98 0 chr3 14385169 14385433 -213139145 + AluSx SINE Alu 1 290 -22 1567 147 105 11 chr3 14385530 14385796 -213138782 + AluJb SINE Alu 1 291 -21 2594 66 0 0 chr3 14385804 14386109 -213138469 + AluY SINE Alu 1 305 -6 1169 45 0 0 chr3 14386115 14386247 -213138331 - AluY SINE Alu -179 132 1 2287 94 10 0 chr3 14386618 14386915 -213137663 + AluSq SINE Alu 1 300 -13 2426 90 0 0 chr3 14387740 14388050 -213136528 + AluY SINE Alu 1 310 -1 1841 171 26 0 chr3 14388137 14388441 -213136137 - AluJo SINE Alu 0 312 1 710 328 26 9 chr3 14388448 14388680 -213135898 + MIR SINE MIR 26 261 -1 2473 103 0 0 chr3 14388906 14389218 -213135360 - AluSx SINE Alu 0 312 1 433 380 54 0 chr3 14389313 14389518 -213135060 + MIR SINE MIR 33 248 -14 337 318 59 6 chr3 14389818 14389988 -213134590 - L1M4 LINE L1 -1913 4233 4055 553 115 0 0 chr3 14390070 14390148 -213134430 - U6 snRNA snRNA -29 78 1 387 264 28 9 chr3 14390676 14390782 -213133796 - MIR SINE MIR -135 127 20 276 303 94 59 chr3 14391210 14391464 -213133114 + L2 LINE L2 2969 3231 -41 312 70 0 0 chr3 14391565 14391608 -213132970 + (TG)n Simple_repeat Simple_repeat 2 44 0 782 186 0 0 chr3 14391675 14391799 -213132779 + FLAM_C SINE Alu 2 125 -18 25 83 0 0 chr3 14391885 14391945 -213132633 + AT_rich Low_complexity Low_complexity 1 60 0 2230 117 0 23 chr3 14391945 14392253 -213132325 - AluSx SINE Alu -11 301 1 1994 147 10 0 chr3 14392253 14392545 -213132033 - AluJb SINE Alu -17 295 1 764 164 16 23 chr3 14392563 14392691 -213131887 - FLAM_C SINE Alu -14 129 3 23 0 0 0 chr3 14392794 14392817 -213131761 + AT_rich Low_complexity Low_complexity 1 23 0 1505 162 36 56 chr3 14392827 14393130 -213131448 + AluJo SINE Alu 1 297 -15 2302 122 0 0 chr3 14393130 14393441 -213131137 + AluSx SINE Alu 1 312 0 1224 213 8 12 chr3 14393540 14393784 -213130794 + MIR SINE MIR 20 262 0 568 266 24 16 chr3 14394272 14394290 -213130288 + MIR SINE MIR 17 33 -215 2647 30 0 13 chr3 14394290 14394594 -213129984 + AluY SINE Alu 1 300 -11 568 266 24 16 chr3 14394594 14394746 -213129832 + MIR SINE MIR 33 187 -61 219 243 122 27 chr3 14394787 14394861 -213129717 - MIR SINE MIR -64 144 64 1510 109 41 0 chr3 14394943 14395164 -213129414 + MER30 DNA MER1_type 1 230 0 2398 80 0 10 chr3 14395265 14395566 -213129012 - AluY SINE Alu -13 298 1 2254 108 7 3 chr3 14395569 14395865 -213128713 - AluSp SINE Alu -16 297 1 690 175 50 8 chr3 14395865 14395985 -213128593 - AluJo/FLAM SINE Alu -186 126 2 405 251 131 0 chr3 14395998 14396189 -213128389 + L1ME LINE L1 5603 5818 -303 502 232 10 0 chr3 14396578 14396677 -213127901 + FLAM_A SINE Alu 1 100 -42 27 0 0 0 chr3 14396712 14396739 -213127839 + AT_rich Low_complexity Low_complexity 1 27 0 1645 156 0 50 chr3 14396750 14397033 -213127545 + AluJo SINE Alu 9 277 -35 414 0 0 0 chr3 14397034 14397080 -213127498 + (TAGA)n Simple_repeat Simple_repeat 3 48 0 2697 179 74 59 chr3 14397125 14397842 -213126736 - L1MB7 LINE L1 -17 6167 5440 2371 95 0 0 chr3 14397844 14398138 -213126440 - AluSg SINE Alu -16 294 1 564 96 0 36 chr3 14398162 14398245 -213126333 - AluSg/x SINE Alu -23 287 208 1855 118 8 0 chr3 14398245 14398491 -213126087 - AluSx SINE Alu -64 248 1 959 214 37 7 chr3 14398501 14398772 -213125806 - L1MB4 LINE L1 0 6180 5902 778 186 164 0 chr3 14398799 14398939 -213125639 - FRAM SINE Alu -19 157 1 4002 197 71 38 chr3 14398979 14399545 -213125033 - L1MB4 LINE L1 -1144 5002 4456 2292 106 0 0 chr3 14399545 14399837 -213124741 - AluSc SINE Alu -17 292 1 4002 197 71 38 chr3 14399837 14400261 -213124317 - L1MB4 LINE L1 -1690 4456 3974 2126 132 0 10 chr3 14400261 14400429 -213124149 - AluSx SINE Alu -11 301 136 2242 105 10 29 chr3 14400429 14400742 -213123836 - AluSq SINE Alu -6 307 1 2126 132 0 10 chr3 14400742 14400877 -213123701 - AluSx SINE Alu -176 136 1 4002 197 71 38 chr3 14400877 14400929 -213123649 - L1MB4 LINE L1 -2172 3974 3925 302 313 188 0 chr3 14401496 14401608 -213122970 + MIR SINE MIR 25 157 -105 587 278 57 44 chr3 14401656 14401883 -213122695 - MIR SINE MIR 0 262 33 2346 94 0 0 chr3 14402545 14402831 -213121747 - AluSx SINE Alu -17 295 10 198 0 0 0 chr3 14404080 14404102 -213120476 + (A)n Simple_repeat Simple_repeat 1 22 0 1406 150 5 0 chr3 14404106 14404319 -213120259 + AluSx SINE Alu 1 214 -98 2498 59 0 0 chr3 14404385 14404674 -213119904 + AluY SINE Alu 2 290 -21 648 137 0 0 chr3 14405651 14405746 -213118832 + AluJo/FLAM SINE Alu 35 129 -183 2336 68 0 0 chr3 14405748 14406066 -213118512 + AluY SINE Alu 1 318 0 2145 136 0 7 chr3 14406658 14406960 -213117618 - AluSx SINE Alu -12 300 1 2235 97 0 10 chr3 14407356 14407656 -213116922 - AluSx SINE Alu -14 298 2 900 128 15 0 chr3 14408131 14408264 -213116314 + AluSg/x SINE Alu 170 304 -6 497 172 90 46 chr3 14408297 14408449 -213116129 - MIR SINE MIR -51 211 43 2432 94 0 0 chr3 14408781 14409079 -213115499 + AluSq SINE Alu 1 298 -15 1424 160 86 26 chr3 14409220 14409488 -213115090 + AluJo SINE Alu 1 284 -28 1748 180 20 7 chr3 14409700 14409995 -213114583 + AluJo SINE Alu 6 304 -8 2029 129 7 3 chr3 14409998 14410301 -213114277 + AluSx SINE Alu 1 304 -8 1813 213 101 17 chr3 14410309 14410826 -213113752 + L1ME1 LINE L1 5480 6039 -127 640 76 0 0 chr3 14410839 14410918 -213113660 - AluSg/x SINE Alu -14 295 217 1458 154 0 51 chr3 14411090 14411402 -213113176 - AluY SINE Alu -1 300 5 1008 175 0 63 chr3 14413260 14413466 -213111112 - AluJo SINE Alu 0 312 120 843 168 60 12 chr3 14413466 14413633 -213110945 - MER46A DNA MER2_type -61 175 1 474 223 76 38 chr3 14414064 14414221 -213110357 - MER103 DNA DNA -3 163 1 2034 120 7 48 chr3 14414824 14414996 -213109582 - AluSx SINE Alu -16 296 118 246 32 0 0 chr3 14414996 14415027 -213109551 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2380 74 3 0 chr3 14415027 14415311 -213109267 - AluSp SINE Alu -28 285 1 2034 120 7 48 chr3 14415311 14415446 -213109132 - AluSx SINE Alu -192 120 1 540 301 112 45 chr3 14415448 14415804 -213108774 - L2 LINE L2 -12 3301 2922 184 289 0 0 chr3 14416419 14416464 -213108114 + MIR SINE MIR 23 67 -141 488 224 35 9 chr3 14416509 14416625 -213107953 - MIR SINE MIR -106 156 38 1242 140 0 0 chr3 14416754 14416932 -213107646 - AluSg/x SINE Alu 0 310 133 362 241 12 18 chr3 14417225 14417336 -213107242 - MLT1I LTR MaLR 0 409 318 2518 51 0 3 chr3 14417498 14417793 -213106785 + AluY SINE Alu 1 294 -17 535 243 43 37 chr3 14417932 14418218 -213106360 + L2 LINE L2 2783 3063 -250 189 0 0 0 chr3 14418364 14418385 -213106193 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 400 48 32 0 chr3 14418509 14418572 -213106006 + (TG)n Simple_repeat Simple_repeat 1 65 0 1901 98 0 0 chr3 14419161 14419397 -213105181 + AluSx SINE Alu 40 275 -37 1895 147 0 60 chr3 14419807 14420126 -213104452 + AluJb SINE Alu 1 300 -12 185 386 51 0 chr3 14420575 14420733 -213103845 - MIR SINE MIR -53 209 44 1856 146 28 0 chr3 14421760 14422048 -213102530 + AluJo SINE Alu 1 296 -16 189 250 0 39 chr3 14422077 14422129 -213102449 - MIR SINE MIR -100 162 113 2323 115 0 0 chr3 14422596 14422900 -213101678 - AluSx SINE Alu -8 304 1 2403 103 0 22 chr3 14423581 14423900 -213100678 + AluSx SINE Alu 1 312 0 2581 64 0 0 chr3 14424056 14424352 -213100226 + AluY SINE Alu 1 296 -15 2396 64 0 0 chr3 14424403 14424715 -213099863 + AluY SINE Alu 1 312 0 323 295 65 9 chr3 14424963 14425121 -213099457 + MIR SINE MIR 34 202 -60 180 363 26 9 chr3 14425502 14425615 -213098963 - L2 LINE L2 -527 2787 2673 317 172 184 11 chr3 14425840 14425927 -213098651 + MIR SINE MIR 84 185 -77 308 290 28 55 chr3 14426222 14426367 -213098211 - MIR3 SINE MIR -60 148 8 2491 89 0 0 chr3 14426371 14426674 -213097904 - AluSx SINE Alu -9 303 1 373 235 68 53 chr3 14426676 14426808 -213097770 - MIR SINE MIR -62 146 12 340 288 144 44 chr3 14427049 14427103 -213097475 + L1ME4a LINE L1 5675 5722 -399 1865 158 10 13 chr3 14427103 14427401 -213097177 + AluJo SINE Alu 1 297 -15 340 288 144 44 chr3 14427401 14427575 -213097003 + L1ME4a LINE L1 5722 5926 -195 1759 131 15 19 chr3 14427623 14427891 -213096687 - AluJb SINE Alu -45 267 1 248 219 0 2 chr3 14427950 14427999 -213096579 + MIR SINE MIR 43 90 -118 2030 140 7 3 chr3 14428237 14428529 -213096049 + AluSx SINE Alu 1 293 -19 435 215 19 166 chr3 14428577 14428745 -213095833 + L2 LINE L2 3087 3204 -109 1741 172 0 39 chr3 14428745 14429053 -213095525 - AluJb SINE Alu -16 296 1 435 215 19 166 chr3 14429053 14429149 -213095429 + L2 LINE L2 3204 3312 -1 375 291 64 7 chr3 14429158 14429299 -213095279 + Charlie8 DNA MER1_type 117 265 -2152 1781 132 68 32 chr3 14429590 14429871 -213094707 + AluSx SINE Alu 1 291 -21 983 120 0 120 chr3 14429908 14429926 -213094652 + AluSg/x SINE Alu 121 140 -165 2217 114 10 0 chr3 14429926 14430234 -213094344 + AluSx SINE Alu 1 311 -1 983 120 0 120 chr3 14430234 14430422 -213094156 + AluSg/x SINE Alu 140 305 0 1008 175 0 63 chr3 14431104 14431310 -213093268 - AluJo SINE Alu 0 312 120 843 168 60 12 chr3 14431310 14431477 -213093101 - MER46A DNA MER2_type -61 175 1 2324 102 7 0 chr3 14432206 14432499 -213092079 - AluSq SINE Alu -18 295 1 820 89 0 0 chr3 14432614 14432715 -213091863 - AluSg SINE Alu -209 101 1 799 263 31 24 chr3 14432764 14433019 -213091559 - MIR SINE MIR -4 258 2 306 216 142 68 chr3 14433032 14433194 -213091384 + L1ME4a LINE L1 5946 6119 -2 2066 142 0 10 chr3 14433276 14433586 -213090992 + AluSx SINE Alu 1 307 -5 230 265 41 61 chr3 14433633 14433731 -213090847 - MIR3 SINE MIR -3 205 110 2142 109 7 3 chr3 14434252 14434560 -213090018 - AluSx SINE Alu 0 309 1 999 167 29 17 chr3 14434667 14434841 -213089737 + AluJb SINE Alu 119 294 -18 2261 109 13 10 chr3 14434851 14435162 -213089416 - AluSx SINE Alu 0 312 1 813 155 0 16 chr3 14435212 14435341 -213089237 + AluJo/FLAM SINE Alu 6 132 -180 2502 74 0 6 chr3 14435343 14435654 -213088924 + AluY SINE Alu 1 309 -2 216 0 0 0 chr3 14435801 14435825 -213088753 + (T)n Simple_repeat Simple_repeat 1 24 0 1684 146 9 110 chr3 14436035 14436203 -213088375 - AluJo SINE Alu -11 301 118 222 37 0 0 chr3 14436203 14436230 -213088348 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2338 82 0 0 chr3 14436230 14436512 -213088066 - AluY SINE Alu -29 282 1 1684 146 9 110 chr3 14436512 14436543 -213088035 - AluJo SINE Alu -193 119 86 2517 61 3 0 chr3 14436543 14436836 -213087742 - AluY SINE Alu -17 294 1 1684 146 9 110 chr3 14436836 14436969 -213087609 - AluJo SINE Alu -226 86 1 499 230 138 0 chr3 14436995 14437147 -213087431 + MER96 DNA MER1_type 1 173 -2 388 282 0 10 chr3 14437152 14437255 -213087323 - L2 LINE L2 -32 3281 3180 2375 104 10 0 chr3 14437911 14438220 -213086358 + AluSx SINE Alu 1 312 0 23 33 0 0 chr3 14438339 14438369 -213086209 + AT_rich Low_complexity Low_complexity 1 30 0 1711 154 70 0 chr3 14438547 14438819 -213085759 - AluJo SINE Alu -21 291 1 237 296 99 59 chr3 14438867 14439000 -213085578 - L1MC/D LINE L1 -1926 5882 5756 2152 138 0 13 chr3 14439000 14439174 -213085404 - AluSx SINE Alu -5 307 137 2187 132 0 0 chr3 14439174 14439469 -213085109 - AluSx SINE Alu -17 295 1 2152 138 0 13 chr3 14439469 14439605 -213084973 - AluSx SINE Alu -175 137 1 237 296 99 59 chr3 14439605 14439775 -213084803 - L1MC/D LINE L1 -2052 5756 5567 315 289 240 10 chr3 14439982 14440290 -213084288 - L2 LINE L2 -9 3304 2926 2013 146 69 50 chr3 14441004 14441063 -213083515 + MER65A LTR ERV1 1 57 -388 2024 106 46 7 chr3 14441063 14441346 -213083232 + AluSx SINE Alu 1 294 -18 2013 146 69 50 chr3 14441346 14441690 -213082888 + MER65A LTR ERV1 57 412 -33 2442 99 0 3 chr3 14441691 14442004 -213082574 - AluSx SINE Alu 0 312 1 2575 56 3 0 chr3 14442010 14442316 -213082262 - AluY SINE Alu -4 307 1 1081 70 8 0 chr3 14442316 14442445 -213082133 - AluSq/x SINE Alu -183 130 1 25 0 0 0 chr3 14442446 14442471 -213082107 + AT_rich Low_complexity Low_complexity 1 25 0 2059 150 0 3 chr3 14442507 14442807 -213081771 - AluSx SINE Alu -13 299 1 2211 70 3 14 chr3 14443171 14443482 -213081096 + AluY SINE Alu 1 308 0 1179 287 76 12 chr3 14443652 14444084 -213080494 - MLT1J LTR MaLR -50 461 2 2527 36 19 26 chr3 14444459 14444766 -213079812 - AluY SINE Alu -6 305 1 895 168 38 32 chr3 14444823 14445008 -213079570 + MER5A DNA MER1_type 4 189 0 2553 68 3 3 chr3 14445011 14445319 -213079259 + AluSp SINE Alu 1 308 -5 2243 112 3 6 chr3 14445329 14445641 -213078937 + AluSx SINE Alu 1 311 -1 961 122 0 98 chr3 14445641 14445829 -213078749 + AluSg/x SINE Alu 134 305 0 1018 171 0 63 chr3 14446515 14446720 -213077858 - AluJo SINE Alu -1 311 120 843 168 60 12 chr3 14446720 14446887 -213077691 - MER46A DNA MER2_type -61 175 1 474 223 76 38 chr3 14447318 14447475 -213077103 - MER103 DNA DNA -3 163 1 2046 117 7 48 chr3 14448078 14448250 -213076328 - AluSx SINE Alu -16 296 118 246 32 0 0 chr3 14448250 14448281 -213076297 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2380 74 3 0 chr3 14448281 14448565 -213076013 - AluSp SINE Alu -28 285 1 2046 117 7 48 chr3 14448565 14448700 -213075878 - AluSx SINE Alu -192 120 1 514 303 112 45 chr3 14448702 14449058 -213075520 - L2 LINE L2 -12 3301 2922 184 289 0 0 chr3 14449673 14449718 -213074860 + MIR SINE MIR 23 67 -141 488 224 35 9 chr3 14449763 14449879 -213074699 - MIR SINE MIR -106 156 38 1216 134 0 11 chr3 14450006 14450185 -213074393 - AluSg/x SINE Alu -1 311 135 362 241 12 18 chr3 14450478 14450589 -213073989 - MLT1I LTR MaLR 0 409 318 2537 50 0 3 chr3 14450751 14451048 -213073530 + AluY SINE Alu 1 296 -15 535 243 43 37 chr3 14451187 14451473 -213073105 + L2 LINE L2 2783 3063 -250 189 0 0 0 chr3 14451619 14451640 -213072938 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 382 49 33 0 chr3 14451764 14451825 -213072753 + (TG)n Simple_repeat Simple_repeat 1 63 0 1901 98 0 0 chr3 14452414 14452650 -213071928 + AluSx SINE Alu 40 275 -37 1895 147 0 60 chr3 14453060 14453379 -213071199 + AluJb SINE Alu 1 300 -12 185 386 51 0 chr3 14453828 14453986 -213070592 - MIR SINE MIR -53 209 44 1856 146 28 0 chr3 14455013 14455301 -213069277 + AluJo SINE Alu 1 296 -16 200 231 0 39 chr3 14455330 14455382 -213069196 - MIR SINE MIR -100 162 113 2323 115 0 0 chr3 14455849 14456153 -213068425 - AluSx SINE Alu -8 304 1 2403 103 0 22 chr3 14456834 14457153 -213067425 + AluSx SINE Alu 1 312 0 2581 64 0 0 chr3 14457309 14457605 -213066973 + AluY SINE Alu 1 296 -15 2396 64 0 0 chr3 14457656 14457968 -213066610 + AluY SINE Alu 1 312 0 323 295 65 9 chr3 14458216 14458374 -213066204 + MIR SINE MIR 34 202 -60 180 363 26 9 chr3 14458755 14458868 -213065710 - L2 LINE L2 -527 2787 2673 317 172 184 11 chr3 14459093 14459180 -213065398 + MIR SINE MIR 84 185 -77 308 285 28 56 chr3 14459475 14459619 -213064959 - MIR3 SINE MIR -61 147 8 2491 89 0 0 chr3 14459623 14459926 -213064652 - AluSx SINE Alu -9 303 1 395 242 40 16 chr3 14459928 14460052 -213064526 - MIR SINE MIR -62 146 20 377 262 172 47 chr3 14460297 14460355 -213064223 + L1ME4a LINE L1 5665 5714 -407 1865 158 10 13 chr3 14460355 14460653 -213063925 + AluJo SINE Alu 1 297 -15 377 262 172 47 chr3 14460653 14460827 -213063751 + L1ME4a LINE L1 5714 5926 -195 713 217 25 31 chr3 14460851 14461012 -213063566 - MIR SINE MIR -17 245 86 271 208 0 65 chr3 14461210 14461287 -213063291 - MIR SINE MIR -139 123 52 371 304 138 7 chr3 14461612 14461750 -213062828 + MIR SINE MIR 28 183 -79 2342 105 0 0 chr3 14462080 14462386 -213062192 + AluY SINE Alu 1 306 -5 2011 142 13 3 chr3 14462420 14462723 -213061855 - AluJo SINE Alu 0 312 7 1994 139 14 17 chr3 14462741 14463036 -213061542 - AluJb SINE Alu -18 294 1 2300 76 31 3 chr3 14463371 14463661 -213060917 - AluSc SINE Alu -11 298 1 242 349 112 18 chr3 14463870 14464039 -213060539 - MIR SINE MIR -27 235 51 1998 106 0 22 chr3 14464249 14464524 -213060054 + AluSx SINE Alu 44 312 0 359 226 69 0 chr3 14464751 14464853 -213059725 - L1MC5 LINE L1 -35 7926 7818 183 229 86 57 chr3 14465380 14465450 -213059128 + MER5A DNA MER1_type 1 72 -117 240 295 32 0 chr3 14465524 14465619 -213058959 - MER113 DNA MER1_type? -415 106 9 322 206 52 81 chr3 14465739 14465875 -213058703 - LTR16B LTR ERVL -4 460 329 2322 108 0 0 chr3 14466288 14466584 -213057994 - AluSx SINE Alu -10 302 7 1583 101 18 0 chr3 14466597 14466814 -213057764 - AluSg/x SINE Alu -19 293 73 210 37 0 0 chr3 14466814 14466841 -213057737 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 731 238 21 0 chr3 14466841 14466984 -213057594 - FRAM SINE Alu -19 147 2 2328 112 3 0 chr3 14467444 14467748 -213056830 + AluSx SINE Alu 1 305 -7 540 225 7 80 chr3 14467918 14468045 -213056533 + MIR SINE MIR 89 205 -57 1598 157 25 46 chr3 14468045 14468215 -213056363 - AluJo SINE Alu -22 290 127 2583 70 0 0 chr3 14468215 14468517 -213056061 + AluY SINE Alu 1 302 -9 1598 157 25 46 chr3 14468517 14468626 -213055952 - AluJo SINE Alu -185 127 17 540 225 7 80 chr3 14468626 14468649 -213055929 + MIR SINE MIR 205 228 -34 321 328 81 15 chr3 14469007 14469205 -213055373 + MIR SINE MIR 40 250 -12 2358 103 0 3 chr3 14469642 14469954 -213054624 - AluSx SINE Alu -1 311 1 182 33 67 0 chr3 14469955 14469985 -213054593 + T-rich Low_complexity Low_complexity 2 33 0 854 167 0 0 chr3 14469988 14470120 -213054458 + AluJb SINE Alu 157 288 -24 639 226 27 21 chr3 14470122 14470308 -213054270 + ORSL DNA AcHobo 89 275 0 809 153 0 0 chr3 14470340 14470458 -213054120 + FLAM_A SINE Alu 2 119 -23 586 190 0 0 chr3 14470488 14470588 -213053990 + AluJb SINE Alu 26 125 -187 2135 117 13 13 chr3 14470589 14470896 -213053682 - AluSx SINE Alu -5 307 1 727 172 52 0 chr3 14471096 14471230 -213053348 - FLAM_C SINE Alu -1 142 2 1915 149 3 7 chr3 14471242 14471530 -213053048 - AluJo SINE Alu -25 287 1 1125 111 81 77 chr3 14471558 14471793 -213052785 - MER46A DNA MER2_type 0 236 1 937 29 0 0 chr3 14471933 14472038 -213052540 - AluSc SINE Alu -204 105 1 1299 163 10 63 chr3 14472688 14472989 -213051589 - AluSq SINE Alu -28 285 1 1944 127 0 17 chr3 14473165 14473457 -213051121 + AluSx SINE Alu 1 287 -25 645 145 40 24 chr3 14473509 14473633 -213050945 + AluY SINE Alu 182 307 -4 320 256 26 83 chr3 14473743 14473811 -213050767 + MIR SINE MIR 114 184 -78 875 165 0 88 chr3 14473811 14473993 -213050585 - FRAM SINE Alu 0 166 1 320 256 26 83 chr3 14473993 14474080 -213050498 + MIR SINE MIR 184 260 -2 1036 191 23 56 chr3 14474089 14474248 -213050330 - AluJo SINE Alu -21 291 139 2112 131 3 13 chr3 14474248 14474562 -213050016 - AluSx SINE Alu -1 311 1 1036 191 23 56 chr3 14474562 14474617 -213049961 - AluJo SINE Alu -173 139 84 22 35 0 0 chr3 14474650 14474679 -213049899 + AT_rich Low_complexity Low_complexity 1 29 0 2044 148 0 3 chr3 14474801 14475099 -213049479 - AluSx SINE Alu -15 297 1 759 179 8 0 chr3 14475196 14475319 -213049259 - FLAM_C SINE Alu -17 126 3 2539 50 0 3 chr3 14475351 14475650 -213048928 + AluY SINE Alu 1 298 -13 1566 207 4 0 chr3 14476286 14476542 -213048036 + AluJb SINE Alu 1 257 -55 2112 134 0 6 chr3 14476543 14476856 -213047722 - AluSx SINE Alu -1 311 1 24 85 0 0 chr3 14476933 14476992 -213047586 + AT_rich Low_complexity Low_complexity 1 59 0 295 335 26 79 chr3 14477272 14477358 -213047220 - MIR SINE MIR -16 246 170 2001 117 10 45 chr3 14477358 14477666 -213046912 - AluSx SINE Alu -15 297 1 295 335 26 79 chr3 14477666 14477731 -213046847 - MIR SINE MIR -92 170 103 970 142 58 0 chr3 14478811 14478966 -213045612 - AluSg/x SINE Alu -12 298 135 184 148 0 0 chr3 14479002 14479029 -213045549 - MIR3 SINE MIR -27 181 155 285 261 194 45 chr3 14479204 14479338 -213045240 - MIR3 SINE MIR -25 183 30 543 311 83 19 chr3 14479641 14479847 -213044731 - L2 LINE L2 -341 2973 2745 2329 118 7 0 chr3 14479847 14480152 -213044426 - AluSx SINE Alu -5 307 1 543 311 83 19 chr3 14480152 14480209 -213044369 - L2 LINE L2 -569 2745 2693 1411 234 55 18 chr3 14480278 14480676 -213043902 - MLT1J LTR MaLR 0 511 99 247 326 45 11 chr3 14480707 14480796 -213043782 - L2 LINE L2 -224 3048 2957 311 333 0 60 chr3 14480846 14480996 -213043582 + MIR3 SINE MIR 1 141 -67 2547 68 3 0 chr3 14481030 14481338 -213043240 + AluY SINE Alu 1 309 -2 362 56 0 19 chr3 14481418 14481472 -213043106 + (TG)n Simple_repeat Simple_repeat 1 53 0 198 143 0 0 chr3 14481598 14481633 -213042945 + (CA)n Simple_repeat Simple_repeat 2 36 0 411 247 131 73 chr3 14481796 14482055 -213042523 - MLT1K LTR MaLR -162 426 153 337 302 102 50 chr3 14482584 14482931 -213041647 + L2 LINE L2 2344 2714 -600 2322 75 0 56 chr3 14482931 14483252 -213041326 + AluSx SINE Alu 1 303 -9 337 302 102 50 chr3 14483252 14483288 -213041290 + L2 LINE L2 2714 2747 -567 2319 110 0 3 chr3 14483369 14483669 -213040909 + AluSx SINE Alu 1 299 -13 2222 108 7 7 chr3 14483679 14483985 -213040593 + AluSq SINE Alu 1 306 -7 382 313 27 34 chr3 14484027 14484174 -213040404 + MIR SINE MIR 98 243 -19 2416 68 3 19 chr3 14484457 14484767 -213039811 - AluSp SINE Alu -8 305 1 2282 127 0 3 chr3 14484890 14485198 -213039380 - AluSx SINE Alu -5 307 1 2493 82 0 0 chr3 14485725 14486028 -213038550 - AluSx SINE Alu -9 303 1 1254 184 0 21 chr3 14486900 14487133 -213037445 - AluJb SINE Alu 0 312 85 893 146 0 33 chr3 14487137 14487288 -213037290 - AluSq/x SINE Alu -166 146 1 234 0 0 0 chr3 14487310 14487336 -213037242 + (TTTA)n Simple_repeat Simple_repeat 4 29 0 2287 98 0 0 chr3 14487338 14487625 -213036953 - AluY SINE Alu -24 287 1 736 203 0 8 chr3 14487641 14487774 -213036804 - FLAM_C SINE Alu 0 133 2 2329 107 3 0 chr3 14488044 14488344 -213036234 + AluSp SINE Alu 1 301 -12 1742 91 5 0 chr3 14488639 14488858 -213035720 - AluSg SINE Alu -90 220 1 1329 95 6 0 chr3 14488858 14489027 -213035551 - AluSp SINE Alu -10 303 134 2298 96 10 3 chr3 14489027 14489328 -213035250 - AluY SINE Alu -8 303 1 1853 149 10 36 chr3 14489328 14489636 -213034942 - AluJb SINE Alu -11 301 1 212 234 0 0 chr3 14489711 14489758 -213034820 + L2 LINE L2 3267 3313 0 210 375 68 17 chr3 14489861 14490037 -213034541 - L2 LINE L2 -558 2756 2572 366 264 66 9 chr3 14490557 14490663 -213033915 + MER5A DNA MER1_type 78 189 0 2431 85 3 3 chr3 14490666 14490973 -213033605 + AluSp SINE Alu 1 307 -6 2114 126 0 7 chr3 14490983 14491277 -213033301 + AluSx SINE Alu 1 292 -20 838 131 0 51 chr3 14491315 14491452 -213033126 + FLAM_C SINE Alu 2 131 -2 1432 184 4 16 chr3 14491462 14491712 -213032866 + AluJo SINE Alu 3 249 -63 2497 39 0 0 chr3 14492061 14492366 -213032212 - AluY SINE Alu 0 305 1 1075 70 8 0 chr3 14492366 14492495 -213032083 - AluSq/x SINE Alu -183 130 1 25 0 0 0 chr3 14492496 14492521 -213032057 + AT_rich Low_complexity Low_complexity 1 25 0 2054 150 0 3 chr3 14492557 14492857 -213031721 - AluSx SINE Alu -13 299 1 1398 157 0 15 chr3 14493221 14493482 -213031096 + AluY SINE Alu 1 257 -54 244 288 116 30 chr3 14493804 14494037 -213030541 + L2 LINE L2 2605 2857 -457 217 289 175 57 chr3 14494093 14494287 -213030291 + L2 LINE L2 2893 3109 -163 369 330 0 10 chr3 14494600 14494703 -213029875 + MIR SINE MIR 21 122 -140 1885 124 10 42 chr3 14495220 14495364 -213029214 + AluJo SINE Alu 1 148 -164 2496 70 0 3 chr3 14495364 14495665 -213028913 + AluY SINE Alu 1 300 -11 1885 124 10 42 chr3 14495665 14495827 -213028751 + AluJo SINE Alu 148 297 -15 739 155 23 16 chr3 14496226 14496355 -213028223 + AluJo SINE Alu 6 135 -177 1732 84 5 0 chr3 14496513 14496728 -213027850 - AluSp SINE Alu -97 216 1 2390 88 0 3 chr3 14496902 14497198 -213027380 - AluSc SINE Alu -14 295 1 634 206 177 0 chr3 14497214 14497355 -213027223 + AluJo SINE Alu 132 297 -15 2025 153 0 0 chr3 14497379 14497673 -213026905 + AluSx SINE Alu 1 294 -18 405 250 56 0 chr3 14498644 14498752 -213025826 + L2 LINE L2 3191 3304 -9 204 40 0 0 chr3 14498871 14498896 -213025682 + (A)n Simple_repeat Simple_repeat 1 25 0 718 225 23 6 chr3 14499080 14499253 -213025325 + MER5B DNA MER1_type 1 176 -2 505 139 0 0 chr3 14499813 14499885 -213024693 - AluS SINE Alu -239 73 2 1918 161 0 7 chr3 14499986 14500284 -213024294 - AluJb SINE Alu -12 300 5 799 160 8 0 chr3 14500285 14500410 -213024168 - AluJo/FLAM SINE Alu -184 128 3 283 228 22 22 chr3 14500828 14500920 -213023658 + MIR3 SINE MIR 90 181 -27 524 292 65 34 chr3 14502010 14502392 -213022186 - MLT1J LTR MaLR -7 504 73 2371 104 3 0 chr3 14502476 14502784 -213021794 - AluSg SINE Alu -1 309 1 1553 255 106 38 chr3 14502811 14503576 -213021002 - HAL1 LINE L1 -96 2411 1595 2265 94 3 16 chr3 14504066 14504374 -213020204 - AluSg SINE Alu 0 310 7 2224 99 0 7 chr3 14504405 14504698 -213019880 - AluY SINE Alu -20 291 1 219 320 70 39 chr3 14504774 14504902 -213019676 + MIR SINE MIR 91 222 -40 24 0 0 0 chr3 14505077 14505101 -213019477 + AT_rich Low_complexity Low_complexity 1 24 0 443 232 0 65 chr3 14505191 14505329 -213019249 + MIR SINE MIR 50 178 -84 2405 153 108 6 chr3 14505974 14506379 -213018199 + L1MB7 LINE L1 5390 5863 -315 4669 49 26 0 chr3 14506379 14506955 -213017623 + LTR10C LTR ERV1 1 591 0 2405 153 108 6 chr3 14506955 14507077 -213017501 + L1MB7 LINE L1 5863 5971 -207 2149 132 0 13 chr3 14507131 14507435 -213017143 - AluSg SINE Alu -7 303 4 316 93 56 0 chr3 14507442 14507496 -213017082 + L1MB7 LINE L1 6119 6175 -9 349 261 91 53 chr3 14507603 14507872 -213016706 - L1MC4a LINE L1 -549 5572 5487 2426 68 0 36 chr3 14507872 14508179 -213016399 - AluY SINE Alu -15 296 1 349 261 91 53 chr3 14508179 14508256 -213016322 - L1MC4a LINE L1 -634 5487 5414 2408 59 24 0 chr3 14508266 14508553 -213016025 - AluY SINE Alu -17 294 1 866 160 0 13 chr3 14508645 14508795 -213015783 - AluJb SINE Alu -11 301 154 2272 82 0 7 chr3 14508956 14509248 -213015330 - AluY SINE Alu -21 290 1 808 155 0 16 chr3 14509250 14509379 -213015199 - AluJo/FLAM SINE Alu -180 132 6 2261 109 13 10 chr3 14509429 14509740 -213014838 + AluSx SINE Alu 1 312 0 994 167 29 17 chr3 14509750 14509924 -213014654 - AluJb SINE Alu -18 294 119 2343 115 0 0 chr3 14510031 14510335 -213014243 + AluSx SINE Alu 1 304 -8 183 270 80 90 chr3 14511332 14511432 -213013146 - L2 LINE L2 0 3272 3174 2432 57 0 20 chr3 14511527 14511828 -213012750 + AluY SINE Alu 1 295 -16 1933 110 57 11 chr3 14512020 14512301 -213012277 + AluSx SINE Alu 1 294 -18 2177 121 0 10 chr3 14512538 14512836 -213011742 + AluSq SINE Alu 1 295 -18 655 198 9 0 chr3 14512901 14513017 -213011561 + FLAM_A SINE Alu 1 117 -16 23 33 0 0 chr3 14513017 14513047 -213011531 + AT_rich Low_complexity Low_complexity 1 30 0 2257 100 7 3 chr3 14513053 14513352 -213011226 - AluSx SINE Alu -12 300 1 851 146 14 0 chr3 14513352 14513496 -213011082 - L1M4 LINE L1 -686 5492 5347 408 161 210 0 chr3 14513582 14513706 -213010872 + L2 LINE L2 2827 2976 -337 1648 211 113 43 chr3 14513734 14513772 -213010806 - MLT1D LTR MaLR -2 503 469 4352 149 75 92 chr3 14513772 14514861 -213009717 - MER11C LTR ERVK 0 1071 1 1648 211 113 43 chr3 14514861 14515292 -213009286 - MLT1D LTR MaLR -36 469 1 389 218 0 36 chr3 14515437 14515547 -213009031 + L2 LINE L2 3180 3285 -28 283 251 62 11 chr3 14516097 14516220 -213008358 + MIR SINE MIR 46 140 -68 859 189 38 32 chr3 14517003 14517188 -213007390 - MER5A DNA MER1_type 0 189 4 2472 36 19 26 chr3 14517245 14517552 -213007026 + AluY SINE Alu 1 305 -6 1160 287 76 12 chr3 14517927 14518359 -213006219 + MLT1J LTR MaLR 2 461 -50 234 0 0 0 chr3 14518529 14518555 -213006023 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1759 148 3 11 chr3 14518650 14518934 -213005644 - AluSx SINE Alu -30 282 1 24 85 0 0 chr3 14519011 14519070 -213005508 + AT_rich Low_complexity Low_complexity 1 59 0 1972 117 10 45 chr3 14519436 14519744 -213004834 - AluSx SINE Alu -15 297 1 2180 103 14 0 chr3 14520026 14520318 -213004260 + AluSx SINE Alu 6 301 -11 280 190 0 127 chr3 14520487 14520542 -213004036 + Tigger2 DNA MER2_type 1 31 -403 1989 150 3 3 chr3 14520542 14520835 -213003743 - AluSx SINE Alu -19 293 1 280 190 0 127 chr3 14520835 14520858 -213003720 + Tigger2 DNA MER2_type 31 55 -379 * 1234 118 98 10 chr3 14520842 14521045 -213003533 + Tigger2 DNA MER2_type 2267 2487 -231 427 99 56 14 chr3 14521045 14521149 -213003429 - AluSc SINE Alu 0 311 205 * 485 73 0 0 chr3 14521144 14521212 -213003366 + Alu SINE Alu 236 303 -9 2131 132 0 3 chr3 14521222 14521517 -213003061 + AluSx SINE Alu 1 294 -18 1392 73 0 0 chr3 14522079 14522244 -213002334 - AluSg/x SINE Alu -14 298 134 2189 134 0 0 chr3 14522244 14522542 -213002036 - AluSx SINE Alu -14 298 1 1059 159 43 19 chr3 14523159 14523367 -213001211 + L1MB7 LINE L1 5925 6137 -47 198 277 0 21 chr3 14523510 14523557 -213001021 + MIR3 SINE MIR 114 159 -49 765 186 117 0 chr3 14523784 14523929 -213000649 - AluSp SINE Alu -17 296 135 2138 79 6 103 chr3 14523930 14524270 -213000308 - AluSx SINE Alu -5 307 1 1658 153 0 62 chr3 14524476 14524783 -212999795 + AluJo SINE Alu 6 293 -19 2319 96 3 0 chr3 14525477 14525779 -212998799 - AluSg1 SINE Alu -6 303 1 2408 93 3 0 chr3 14525779 14526081 -212998497 - AluSx SINE Alu -9 303 1 227 213 16 16 chr3 14526230 14526291 -212998287 + AluS SINE Alu 12 72 -227 467 183 0 0 chr3 14526500 14526582 -212997996 + AluSp/q SINE Alu 226 307 -6 180 0 0 0 chr3 14526741 14526761 -212997817 + (CTA)n Simple_repeat Simple_repeat 1 20 0 2193 93 3 10 chr3 14527008 14527308 -212997270 - AluY SINE Alu -13 298 1 2474 76 0 3 chr3 14527555 14527858 -212996720 - AluYa5 SINE Alu -9 302 1 1006 155 0 42 chr3 14528375 14528543 -212996035 - FRAM SINE Alu -17 159 1 189 74 0 0 chr3 14528543 14528570 -212996008 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 1902 101 0 88 chr3 14528571 14528877 -212995701 - AluSc SINE Alu -30 279 1 1655 165 49 0 chr3 14529680 14529965 -212994613 - AluSx SINE Alu -13 299 1 22 0 0 0 chr3 14530469 14530491 -212994087 + AT_rich Low_complexity Low_complexity 1 22 0 2352 98 0 3 chr3 14530838 14531134 -212993444 - AluSg SINE Alu -15 295 1 2227 93 0 27 chr3 14532188 14532489 -212992089 + AluSx SINE Alu 1 293 -19 264 154 0 0 chr3 14532490 14532529 -212992049 - AluJo/FLAM SINE Alu -177 125 87 360 233 158 14 chr3 14532532 14532678 -212991900 + L2 LINE L2 3131 3297 -16 400 260 13 89 chr3 14532760 14532906 -212991672 + L2 LINE L2 3095 3218 -95 2421 85 3 0 chr3 14532906 14533211 -212991367 - AluSg SINE Alu -4 306 1 400 260 13 89 chr3 14533211 14533299 -212991279 + L2 LINE L2 3218 3311 -2 203 0 37 0 chr3 14534066 14534093 -212990485 + (TG)n Simple_repeat Simple_repeat 2 29 0 1649 81 5 5 chr3 14534144 14534354 -212990224 - AluSq SINE Alu -28 285 76 2593 49 7 3 chr3 14534355 14534662 -212989916 - AluY SINE Alu -3 308 1 591 114 0 0 chr3 14534666 14534745 -212989833 - AluSq SINE Alu -232 80 2 441 167 76 53 chr3 14535098 14535230 -212989348 + MIR SINE MIR 77 211 -51 2187 113 10 0 chr3 14535274 14535575 -212989003 - AluSx SINE Alu -6 306 3 2056 170 109 13 chr3 14535742 14536048 -212988530 - L1MB8 LINE L1 -9 6169 5805 2421 83 0 3 chr3 14536048 14536348 -212988230 - AluY SINE Alu -12 299 1 2056 170 109 13 chr3 14536348 14536489 -212988089 - L1MB8 LINE L1 -373 5805 5679 1383 195 33 0 chr3 14536489 14536730 -212987848 - AluJb SINE Alu -63 249 1 513 148 168 0 chr3 14536731 14536832 -212987746 - L1MB8 LINE L1 -571 5607 5490 2391 106 3 0 chr3 14536832 14537143 -212987435 - AluSx SINE Alu 0 312 1 1576 101 18 0 chr3 14537151 14537369 -212987209 - AluSg/x SINE Alu -18 292 71 210 37 0 0 chr3 14537369 14537396 -212987182 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 656 248 21 7 chr3 14537396 14537541 -212987037 - FRAM SINE Alu -19 147 1 370 275 101 28 chr3 14537655 14537838 -212986740 - MIR SINE MIR -50 212 20 2413 87 3 16 chr3 14538218 14538530 -212986048 - AluSg SINE Alu 0 310 3 418 290 70 55 chr3 14539287 14539487 -212985091 - MER63A DNA MER1_type -3 207 5 244 289 125 13 chr3 14539915 14540067 -212984511 + MIR SINE MIR 72 240 -22 289 209 0 30 chr3 14540611 14540678 -212983900 + L3 LINE CR1 1227 1291 -286 316 263 74 0 chr3 14541474 14541569 -212983009 + L2 LINE L2 3195 3296 -17 260 250 15 0 chr3 14541651 14541719 -212982859 + (TA)n Simple_repeat Simple_repeat 2 70 0 210 202 0 56 chr3 14542008 14542097 -212982481 + A-rich Low_complexity Low_complexity 1 84 0 4653 238 32 7 chr3 14542214 14543404 -212981174 - L1P LINE L1 -3497 2649 1430 356 313 17 0 chr3 14543523 14543638 -212980940 + L1ME3A LINE L1 5777 5893 -277 1750 234 140 20 chr3 14544629 14545223 -212979355 + L1MC4 LINE L1 6485 7149 -893 300 186 0 0 chr3 14545217 14545276 -212979302 + L1MC4a LINE L1 7137 7195 -613 * 14544 71 19 7 chr3 14545376 14546341 -212978237 + L1P LINE L1 2706 3658 -2488 366 23 0 0 chr3 14546341 14546384 -212978194 + (CA)n Simple_repeat Simple_repeat 2 44 0 14544 71 19 7 chr3 14546384 14547398 -212977180 + L1P LINE L1 3658 4708 -1438 32 57 0 0 chr3 14547971 14548024 -212976554 + AT_rich Low_complexity Low_complexity 1 53 0 277 195 109 70 chr3 14548024 14548152 -212976426 - MER113 DNA MER1_type? -386 135 3 203 171 0 0 chr3 14548216 14548257 -212976321 + (TA)n Simple_repeat Simple_repeat 2 42 0 334 269 0 48 chr3 14549054 14549240 -212975338 + T-rich Low_complexity Low_complexity 2 178 0 3789 90 52 0 chr3 14549399 14549954 -212974624 + L1PA10 LINE L1 5585 6168 0 288 239 109 22 chr3 14549968 14550060 -212974518 - L1ME LINE L1 -594 5572 5473 1533 228 78 38 chr3 14550087 14550614 -212973964 - L1ME1 LINE L1 -26 6140 5593 1032 163 28 0 chr3 14551109 14551287 -212973291 + AluJb SINE Alu 120 302 -10 199 288 198 9 chr3 14551407 14551518 -212973060 - MIR SINE MIR 0 262 131 12202 80 13 2 chr3 14552106 14553774 -212970804 - L1P LINE L1 -812 5334 3649 326 280 60 0 chr3 14553923 14554023 -212970555 + MIR SINE MIR 86 191 -71 397 192 208 0 chr3 14554581 14554701 -212969877 + MIR SINE MIR 28 172 -90 367 312 60 44 chr3 14555259 14555509 -212969069 + MIR SINE MIR 8 261 -1 277 314 64 7 chr3 14555807 14555947 -212968631 - L3 LINE CR1 -794 783 636 7726 100 17 2 chr3 14556379 14557416 -212967162 - L1P3 LINE L1 -5408 1053 1 335 279 103 0 chr3 14558424 14558560 -212966018 - MER5C DNA MER1_type -173 151 2 2712 159 98 12 chr3 14559614 14560178 -212964400 - LTR1B LTR ERV1 0 785 145 401 264 43 14 chr3 14560625 14560765 -212963813 + MLT1K LTR MaLR 374 517 -71 257 275 0 38 chr3 14560842 14560922 -212963656 + MIR SINE MIR 125 201 -61 209 360 67 0 chr3 14562566 14562641 -212961937 + L2 LINE L2 3143 3222 -50 533 338 40 4 chr3 14562661 14562889 -212961689 + MIR SINE MIR 20 255 -7 251 296 93 9 chr3 14563353 14563461 -212961117 - MIR SINE MIR -52 210 94 383 211 0 0 chr3 14563749 14563820 -212960758 + AluJ/FRAM SINE Alu 232 302 0 278 250 0 56 chr3 14563821 14563893 -212960685 - AluYb8 SINE Alu -116 192 125 728 279 88 30 chr3 14563893 14564536 -212960042 - L1MEc LINE L1 -5640 756 36 560 344 106 34 chr3 14564966 14565672 -212958906 - L2 LINE L2 -475 2839 2083 8513 143 37 20 chr3 14566314 14567735 -212956843 + Tigger1 DNA MER2_type 1 1444 -974 1245 253 103 54 chr3 14567835 14568535 -212956043 + L1MC4 LINE L1 7309 8042 0 485 276 158 33 chr3 14568816 14569710 -212954868 + L1ME LINE L1 4465 5477 -685 2724 67 56 0 chr3 14569810 14570116 -212954462 - L1P LINE L1 -3512 2634 2302 181 57 57 0 chr3 14570116 14570151 -212954427 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2724 67 56 0 chr3 14570151 14570217 -212954361 - L1P LINE L1 -3844 2302 2241 430 316 60 23 chr3 14570240 14570455 -212954123 + MIR SINE MIR 33 255 -7 1715 302 32 13 chr3 14570633 14571190 -212953388 + L1M2b LINE L1 19 586 -6623 323 155 121 0 chr3 14571193 14571251 -212953327 + Charlie3 DNA MER1_type 6 70 -2640 * 1442 162 57 142 chr3 14571237 14571589 -212952989 + Charlie3 DNA MER1_type 17 2711 0 362 248 77 43 chr3 14571658 14571775 -212952803 + L1M2b LINE L1 677 797 -6412 1820 189 20 3 chr3 14572116 14572466 -212952112 - L1PA13 LINE L1 -4900 2674 2319 209 83 28 0 chr3 14572515 14572551 -212952027 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 251 339 38 34 chr3 14573406 14573645 -212950933 - L1PA13 LINE L1 -7341 240 1 1800 183 6 10 chr3 14573678 14573990 -212950588 - AluSx SINE Alu -1 311 1 1709 178 58 30 chr3 14574447 14574812 -212949766 + THE1C LTR MaLR 1 375 0 2260 105 0 0 chr3 14575187 14575481 -212949097 - AluY SINE Alu -17 294 1 1024 161 17 17 chr3 14575911 14576091 -212948487 - AluJb SINE Alu -1 311 132 2077 147 10 0 chr3 14576092 14576398 -212948180 - AluSx SINE Alu -3 309 1 1323 105 41 0 chr3 14576935 14577107 -212947471 + AluSq SINE Alu 1 179 -134 1339 134 9 22 chr3 14577406 14577637 -212946941 - L1MB3 LINE L1 -4 6179 5952 1090 239 46 0 chr3 14577661 14577941 -212946637 - L1MC4 LINE L1 -456 7586 7294 2094 116 0 20 chr3 14577951 14578244 -212946334 - AluSq SINE Alu -26 287 1 251 213 16 16 chr3 14578245 14578306 -212946272 + MIR SINE MIR 202 262 0 208 287 25 82 chr3 14578787 14578909 -212945669 - MER5B DNA MER1_type -29 149 35 2017 108 7 10 chr3 14578912 14579200 -212945378 - AluY SINE Alu -20 291 5 426 293 28 83 chr3 14579452 14579705 -212944873 + MIR SINE MIR 16 254 -8 2226 101 0 14 chr3 14580185 14580482 -212944096 + AluSg1 SINE Alu 1 293 -16 219 36 0 0 chr3 14580482 14580510 -212944068 + (TA)n Simple_repeat Simple_repeat 2 29 0 878 150 0 0 chr3 14581435 14581568 -212943010 - FLAM_C SINE Alu 0 133 1 1773 79 0 0 chr3 14582082 14582297 -212942281 + AluSq SINE Alu 83 297 -16 1304 107 122 0 chr3 14582571 14582776 -212941802 + MER30 DNA MER1_type 1 230 0 479 243 79 13 chr3 14582969 14583121 -212941457 - MLT1K LTR MaLR -8 580 419 1711 83 0 9 chr3 14583616 14583844 -212940734 + AluY SINE Alu 80 305 -6 381 358 49 32 chr3 14583909 14584130 -212940448 - L2 LINE L2 -194 3078 2850 308 209 0 0 chr3 14584130 14584197 -212940381 + L1MB8 LINE L1 6103 6169 -9 381 358 49 32 chr3 14584197 14584259 -212940319 - L2 LINE L2 -422 2850 2791 231 291 25 0 chr3 14584448 14584527 -212940051 + MIR SINE MIR 57 137 -71 636 136 18 36 chr3 14584533 14584643 -212939935 + L1M4 LINE L1 5562 5669 -509 2274 106 0 3 chr3 14584645 14584946 -212939632 + AluSg SINE Alu 1 300 -10 412 153 0 0 chr3 14584959 14585018 -212939560 + AluS SINE Alu 4 62 -256 1089 122 0 0 chr3 14585024 14585180 -212939398 + AluSg/x SINE Alu 155 310 0 5925 163 17 4 chr3 14585183 14586833 -212937745 + L1PB1 LINE L1 4477 6144 -7 402 288 50 87 chr3 14587285 14587474 -212937104 + HAL1 LINE L1 11 205 -2302 675 224 6 33 chr3 14587474 14587657 -212936921 + MER104 DNA MER2_type 2 179 -1 402 288 50 87 chr3 14587657 14587905 -212936673 + HAL1 LINE L1 205 432 -2075 268 130 74 0 chr3 14587917 14587971 -212936607 - MER53 DNA DNA -6 183 126 * 392 194 21 11 chr3 14587956 14588049 -212936529 + MER53 DNA DNA 88 181 -8 2139 119 0 31 chr3 14588193 14588511 -212936067 - AluSg SINE Alu -2 308 1 2250 127 0 3 chr3 14588524 14588831 -212935747 - AluSx SINE Alu -6 306 1 242 302 19 19 chr3 14588927 14589033 -212935545 + L2 LINE L2 2947 3052 -220 219 88 0 0 chr3 14589276 14589310 -212935268 - MIR SINE MIR -66 142 109 233 118 0 0 chr3 14589538 14589572 -212935006 + (TG)n Simple_repeat Simple_repeat 2 35 0 218 216 21 103 chr3 14590904 14591001 -212933577 - MIR SINE MIR -14 248 160 207 88 0 0 chr3 14591505 14591539 -212933039 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 711 191 0 0 chr3 14591539 14591654 -212932924 - FLAM_C SINE Alu -23 120 6 278 200 17 0 chr3 14591698 14591758 -212932820 + MIR SINE MIR 88 148 -60 199 345 81 0 chr3 14592235 14592322 -212932256 + MIR SINE MIR 29 122 -86 2279 90 3 3 chr3 14592634 14592934 -212931644 - AluSp SINE Alu 0 313 14 2258 93 0 0 chr3 14593082 14593371 -212931207 - AluY SINE Alu -17 294 6 447 100 0 0 chr3 14593391 14593461 -212931117 + (TTCC)n Simple_repeat Simple_repeat 3 72 0 1934 157 0 0 chr3 14593461 14593741 -212930837 - AluJb SINE Alu -32 280 1 2082 151 0 3 chr3 14593792 14594103 -212930475 - AluJo SINE Alu -2 310 1 2163 108 0 7 chr3 14594116 14594412 -212930166 - AluSq SINE Alu -19 294 1 614 203 112 56 chr3 14594594 14594791 -212929787 - MIR SINE MIR -50 212 5 385 238 165 61 chr3 14594814 14594978 -212929600 - MIR SINE MIR -60 202 22 364 245 129 29 chr3 14595778 14595917 -212928661 + MIR SINE MIR 14 166 -96 201 275 125 0 chr3 14595965 14596045 -212928533 + MIR SINE MIR 169 258 -4 317 308 19 0 chr3 14596053 14596160 -212928418 - MIR SINE MIR -108 154 46 2361 102 0 0 chr3 14596279 14596582 -212927996 - AluSx SINE Alu -9 303 1 534 234 48 30 chr3 14596585 14596752 -212927826 + L2 LINE L2 3135 3304 -9 1629 144 3 59 chr3 14596766 14597071 -212927507 + AluJo SINE Alu 24 311 -1 598 279 201 20 chr3 14597302 14597750 -212926828 - L3 LINE CR1 -308 1269 741 424 277 174 0 chr3 14598396 14598591 -212925987 - MIR SINE MIR -14 248 20 1018 114 0 0 chr3 14598612 14598744 -212925834 - AluSq/x SINE Alu -180 132 1 2165 127 0 0 chr3 14599290 14599589 -212924989 - AluSx SINE Alu -13 299 1 649 228 152 66 chr3 14599639 14600061 -212924517 - HAL1 LINE L1 -72 2435 1978 551 267 48 40 chr3 14600125 14600477 -212924101 + L1MC5 LINE L1 7428 7782 -179 2086 132 0 7 chr3 14600539 14600835 -212923743 + AluSx SINE Alu 1 294 -18 2547 63 0 0 chr3 14600835 14601137 -212923441 + AluY SINE Alu 1 303 -8 194 299 19 58 chr3 14601442 14601596 -212922982 + L2 LINE L2 2944 3091 -181 700 192 116 6 chr3 14602540 14602712 -212921866 - L1 LINE L1 -763 5383 5193 540 194 0 0 chr3 14602733 14602831 -212921747 - U13 snRNA snRNA -2 102 5 333 168 107 15 chr3 14602845 14602862 -212921716 - L1M LINE L1 -801 5345 5331 2030 126 54 0 chr3 14602862 14603156 -212921422 - AluSx SINE Alu -2 310 1 333 168 107 15 chr3 14603156 14603278 -212921300 - L1M LINE L1 -815 5331 5226 218 269 104 0 chr3 14603526 14603593 -212920985 + L2 LINE L2 3149 3222 -50 1529 191 7 7 chr3 14603710 14603993 -212920585 - AluJo SINE Alu -24 288 6 22 0 0 0 chr3 14603998 14604020 -212920558 + AT_rich Low_complexity Low_complexity 1 22 0 336 324 83 0 chr3 14604294 14604439 -212920139 + MIR3 SINE MIR 52 208 0 535 87 0 33 chr3 14604491 14604583 -212919995 - FLAM_C SINE Alu 0 143 55 886 125 8 0 chr3 14604612 14604740 -212919838 + FLAM_C SINE Alu 2 130 -3 1368 162 0 26 chr3 14604774 14605003 -212919575 + AluJb SINE Alu 85 307 -5 301 188 145 34 chr3 14605120 14605237 -212919341 + L1ME4a LINE L1 5976 6105 -16 2111 114 3 0 chr3 14605679 14605969 -212918609 - AluSg SINE Alu -19 291 1 372 89 0 18 chr3 14608156 14608369 -212916209 + AluSx SINE Alu 1 292 -8 278 205 169 0 chr3 14608958 14609041 -212915537 - MIR SINE MIR -49 213 117 2336 87 0 7 chr3 14609256 14609556 -212915022 + AluY SINE Alu 1 298 -13 2430 70 3 10 chr3 14609567 14609865 -212914713 + AluSc SINE Alu 1 296 -13 188 305 142 21 chr3 14609953 14610094 -212914484 - MIR SINE MIR -70 192 35 1214 129 16 5 chr3 14610263 14610449 -212914129 - AluSg/x SINE Alu -18 292 105 1922 164 0 0 chr3 14610498 14610796 -212913782 + AluSx SINE Alu 1 298 -14 225 222 0 0 chr3 14610798 14610852 -212913726 - MER20B DNA MER1_type -726 57 4 1766 173 10 7 chr3 14611036 14611331 -212913247 - AluJb SINE Alu -7 305 10 1982 109 3 7 chr3 14611392 14611686 -212912892 + AluSg SINE Alu 1 293 -17 2027 109 3 16 chr3 14611698 14612001 -212912577 + AluSx SINE Alu 3 301 -11 827 143 8 0 chr3 14612212 14612338 -212912240 + FLAM_C SINE Alu 1 127 -16 21 36 0 0 chr3 14612413 14612441 -212912137 + AT_rich Low_complexity Low_complexity 1 28 0 1693 121 0 112 chr3 14612662 14613002 -212911576 - AluJo SINE Alu -10 302 1 298 237 130 46 chr3 14613005 14613136 -212911442 - L2 LINE L2 -12 3301 3160 195 42 0 0 chr3 14613179 14613203 -212911375 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 610 261 112 11 chr3 14613530 14613718 -212910860 - MIR SINE MIR -18 244 38 183 280 192 48 chr3 14614548 14614673 -212909905 + MIR SINE MIR 119 261 -1 373 217 26 11 chr3 14614683 14614839 -212909739 + MIR SINE MIR 3 225 -37 335 332 175 15 chr3 14614905 14615173 -212909405 - L2 LINE L2 -38 3234 2924 264 204 19 0 chr3 14616126 14616186 -212908392 - MIR SINE MIR -58 150 93 1638 128 85 3 chr3 14616282 14616564 -212908014 + AluJb SINE Alu 1 305 -7 1519 153 34 27 chr3 14616732 14616994 -212907584 - AluJo SINE Alu -48 264 1 240 197 115 0 chr3 14617552 14617613 -212906965 + L2 LINE L2 2792 2859 -455 185 290 129 32 chr3 14617714 14617838 -212906740 - L2 LINE L2 -554 2760 2625 2364 71 0 7 chr3 14618718 14619026 -212905552 - AluSx SINE Alu -6 306 1 1668 114 28 48 chr3 14619026 14619315 -212905263 - AluJb SINE Alu -29 283 1 180 111 0 0 chr3 14619397 14619424 -212905154 + (TCCC)n Simple_repeat Simple_repeat 1 27 0 2135 112 0 3 chr3 14619424 14619728 -212904850 - AluSq SINE Alu -10 303 1 1870 122 17 7 chr3 14619885 14620172 -212904406 - AluSx SINE Alu -22 290 1 1830 144 13 7 chr3 14620212 14620511 -212904067 + AluJb SINE Alu 1 301 -11 2228 74 0 17 chr3 14620841 14621140 -212903438 - AluSp SINE Alu -19 294 1 1941 116 0 41 chr3 14621316 14621635 -212902943 + AluSq SINE Alu 1 306 -7 384 313 27 34 chr3 14621677 14621824 -212902754 + MIR SINE MIR 98 243 -19 2296 65 3 19 chr3 14622107 14622417 -212902161 - AluSp SINE Alu -8 305 1 2130 122 0 3 chr3 14622545 14622848 -212901730 - AluSx SINE Alu -10 302 1 2410 63 0 0 chr3 14623375 14623676 -212900902 - AluSg SINE Alu -9 301 1 231 36 0 0 chr3 14623834 14623862 -212900716 + (CA)n Simple_repeat Simple_repeat 1 28 0 26 74 0 0 chr3 14623902 14623956 -212900622 + AT_rich Low_complexity Low_complexity 1 54 0 406 233 86 55 chr3 14623958 14624141 -212900437 + L1ME1 LINE L1 5905 6164 -2 1657 128 34 60 chr3 14624178 14624476 -212900102 + AluSx SINE Alu 1 290 -22 2188 113 0 0 chr3 14624494 14624796 -212899782 + AluSq SINE Alu 1 302 -11 2011 135 3 3 chr3 14625704 14626016 -212898562 - AluSx SINE Alu 0 312 1 2177 52 41 17 chr3 14626412 14626702 -212897876 - AluY SINE Alu -14 297 1 1362 31 0 0 chr3 14626714 14626877 -212897701 - L1PA2 LINE L1 0 6155 5993 632 191 0 30 chr3 14626882 14627013 -212897565 - FLAM_A SINE Alu -6 127 1 2080 138 0 0 chr3 14627782 14628094 -212896484 + AluSx SINE Alu 1 312 0 1961 111 27 10 chr3 14628127 14628424 -212896154 + AluSx SINE Alu 1 302 -10 330 284 149 14 chr3 14628864 14629012 -212895566 + MIR SINE MIR 22 189 -73 1280 180 103 4 chr3 14629112 14629384 -212895194 + AluJo SINE Alu 1 299 -13 2486 65 0 0 chr3 14629734 14630043 -212894535 + AluSc SINE Alu 1 309 0 1839 84 81 15 chr3 14630053 14630326 -212894252 + AluSg1 SINE Alu 1 291 -18 1418 211 65 0 chr3 14630326 14630667 -212893911 + L1MB4 LINE L1 5818 6180 0 2009 122 0 3 chr3 14630774 14631069 -212893509 - AluSx SINE Alu -18 294 1 254 235 235 0 chr3 14631413 14631511 -212893067 - L2 LINE L2 -1 3312 3192 * 287 226 49 78 chr3 14631495 14631597 -212892981 + L2 LINE L2 3214 3312 -1 206 362 43 0 chr3 14631624 14631718 -212892860 + MIR SINE MIR 49 146 -116 851 186 162 25 chr3 14631976 14632180 -212892398 - AluJo SINE Alu -5 307 76 434 155 10 0 chr3 14632180 14632277 -212892301 + (TG)n Simple_repeat Simple_repeat 2 99 0 434 88 0 0 chr3 14632284 14632341 -212892237 - FLAM SINE Alu -36 107 51 648 154 19 0 chr3 14632378 14632482 -212892096 - FLAM_C SINE Alu -36 107 2 547 159 7 80 chr3 14632484 14632605 -212891973 + LTR37A LTR ERV1 247 358 -68 1771 149 45 0 chr3 14632605 14632894 -212891684 - AluSx SINE Alu -10 302 1 547 159 7 80 chr3 14632894 14632910 -212891668 + LTR37A LTR ERV1 358 374 -52 471 114 0 0 chr3 14633516 14633586 -212890992 + L1MB7 LINE L1 6063 6132 -52 317 115 0 0 chr3 14633868 14633920 -212890658 + Alu SINE Alu 249 300 -2 827 143 8 0 chr3 14634132 14634258 -212890320 + FLAM_C SINE Alu 1 127 -16 21 36 0 0 chr3 14634333 14634361 -212890217 + AT_rich Low_complexity Low_complexity 1 28 0 1650 121 3 112 chr3 14634582 14634921 -212889657 - AluJo SINE Alu -10 302 1 298 237 130 46 chr3 14634924 14635055 -212889523 - L2 LINE L2 -12 3301 3160 195 42 0 0 chr3 14635098 14635122 -212889456 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 610 261 112 11 chr3 14635449 14635637 -212888941 - MIR SINE MIR -18 244 38 183 280 192 48 chr3 14636467 14636592 -212887986 + MIR SINE MIR 119 261 -1 373 217 26 11 chr3 14636602 14636758 -212887820 + MIR SINE MIR 3 225 -37 335 332 175 15 chr3 14636824 14637092 -212887486 - L2 LINE L2 -38 3234 2924 196 315 11 22 chr3 14637198 14637287 -212887291 + L2 LINE L2 2949 3036 -236 2426 60 0 3 chr3 14637288 14637590 -212886988 + AluY SINE Alu 1 301 -10 953 78 39 0 chr3 14637601 14637729 -212886849 + AluSq/x SINE Alu 1 133 -180 481 233 0 0 chr3 14637887 14637973 -212886605 + L2 LINE L2 3154 3239 -33 231 337 87 0 chr3 14638525 14638617 -212885961 + MIR SINE MIR 45 144 -64 1498 167 17 38 chr3 14638882 14639175 -212885403 + AluJo SINE Alu 1 287 -25 1292 111 0 115 chr3 14639252 14639442 -212885136 - L1PB1 LINE L1 -2 6149 5939 207 0 0 0 chr3 14639442 14639465 -212885113 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1963 91 7 14 chr3 14639465 14639750 -212884828 - AluSx SINE Alu -29 283 1 2132 113 0 0 chr3 14639760 14640060 -212884518 - AluSq SINE Alu -13 300 1 1292 111 0 115 chr3 14640060 14640110 -212884468 - L1PB1 LINE L1 -171 5980 5926 2137 99 3 3 chr3 14640281 14640573 -212884005 + AluSx SINE Alu 1 292 -20 2441 57 3 0 chr3 14640884 14641184 -212883394 + AluY SINE Alu 1 301 -10 469 245 29 103 chr3 14641391 14641514 -212883064 - MER5A DNA MER1_type 0 189 85 2102 94 7 0 chr3 14641514 14641801 -212882777 - AluSx SINE Alu -17 295 7 469 245 29 103 chr3 14641801 14641881 -212882697 - MER5A DNA MER1_type -104 85 1 1226 181 3 84 chr3 14641948 14642268 -212882310 - AluJo SINE Alu -18 294 1 1773 130 40 10 chr3 14642791 14643090 -212881488 + AluSx SINE Alu 1 308 -4 28 29 0 0 chr3 14643143 14643178 -212881400 + AT_rich Low_complexity Low_complexity 1 35 0 2513 56 0 0 chr3 14643361 14643663 -212880915 - AluY SINE Alu -9 302 1 1736 155 3 13 chr3 14643709 14644012 -212880566 + AluSc SINE Alu 1 300 -9 28 48 0 0 chr3 14644310 14644352 -212880226 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr3 14645546 14645568 -212879010 + AT_rich Low_complexity Low_complexity 1 22 0 927 115 7 14 chr3 14645749 14645897 -212878681 - AluSg/x SINE Alu -7 303 157 757 168 0 24 chr3 14646220 14646345 -212878233 + FLAM_C SINE Alu 2 123 -20 1345 174 0 38 chr3 14646521 14646785 -212877793 - AluJb SINE Alu -31 281 28 424 275 76 65 chr3 14646819 14647201 -212877377 + L1ME LINE L1 5297 5682 -439 680 130 30 0 chr3 14647218 14647318 -212877260 + U6 snRNA snRNA 1 103 -4 274 70 70 0 chr3 14647473 14647516 -212877062 - MADE1 DNA Mariner 0 80 35 2055 109 0 3 chr3 14647671 14647954 -212876624 - AluSx SINE Alu -26 286 5 2221 103 0 3 chr3 14648246 14648547 -212876031 - AluSx SINE Alu -12 300 1 257 311 0 0 chr3 14648804 14648865 -212875713 + L2 LINE L2 3211 3271 -1 24 0 0 0 chr3 14649224 14649248 -212875330 + AT_rich Low_complexity Low_complexity 1 24 0 2302 72 7 7 chr3 14649696 14650002 -212874576 - AluY SINE Alu -5 306 1 305 170 0 19 chr3 14650130 14650183 -212874395 + MER5B DNA MER1_type 5 56 -122 1703 162 3 23 chr3 14650582 14650891 -212873687 + AluJb SINE Alu 5 307 -5 310 229 107 15 chr3 14651008 14651139 -212873439 + L1ME4a LINE L1 5976 6118 -3 1986 114 3 0 chr3 14651572 14651862 -212872716 - AluSg SINE Alu -19 291 1 374 89 0 18 chr3 14654052 14654265 -212870313 + AluSx SINE Alu 1 292 -8 210 259 0 0 chr3 14654711 14654769 -212869809 + T-rich Low_complexity Low_complexity 1 58 0 275 119 24 0 chr3 14654769 14654811 -212869767 - LTR23 LTR ERV1 -78 359 317 2229 107 0 0 chr3 14654824 14655134 -212869444 - AluY SINE Alu 0 311 2 2140 115 0 0 chr3 14655263 14655567 -212869011 - AluSg SINE Alu -6 304 1 2273 83 0 3 chr3 14655720 14656020 -212868558 - AluY SINE Alu -12 299 1 597 255 75 64 chr3 14656352 14656619 -212867959 - L3 LINE CR1 -682 895 626 187 289 0 19 chr3 14657811 14657863 -212866715 + MIR SINE MIR 20 70 -138 2077 113 0 3 chr3 14657970 14658272 -212866306 - AluSq SINE Alu -12 301 1 324 370 55 28 chr3 14659462 14659877 -212864701 - L2 LINE L2 -188 3084 2661 2348 70 3 0 chr3 14660012 14660311 -212864267 + AluY SINE Alu 3 302 -9 1997 111 17 0 chr3 14660472 14660760 -212863818 + AluSp SINE Alu 1 293 -20 2759 10 0 3 chr3 14660766 14661078 -212863500 + AluYa5 SINE Alu 1 311 0 310 327 175 6 chr3 14661078 14661393 -212863185 - L2 LINE L2 -1317 1997 1630 21 0 0 0 chr3 14661394 14661415 -212863163 + AT_rich Low_complexity Low_complexity 1 21 0 311 183 158 58 chr3 14661416 14661536 -212863042 - MIR SINE MIR -56 206 75 1247 104 0 6 chr3 14662186 14662359 -212862219 - AluSg/x SINE Alu -17 293 122 7465 18 1 0 chr3 14662359 14663233 -212861345 + L1PA3 LINE L1 5310 6184 0 200 213 85 0 chr3 14663366 14663413 -212861165 - L2 LINE L2 -1 3271 3221 1669 145 0 4 chr3 14663614 14663899 -212860679 + AluJb SINE Alu 23 306 0 534 103 0 0 chr3 14664000 14664078 -212860500 + (TA)n Simple_repeat Simple_repeat 2 79 0 2497 55 0 0 chr3 14664078 14664387 -212860191 - AluY SINE Alu -2 309 1 23 0 0 0 chr3 14664445 14664468 -212860110 + AT_rich Low_complexity Low_complexity 1 23 0 230 313 12 0 chr3 14664662 14664745 -212859833 - L1MC/D LINE L1 -1911 5897 5814 3698 147 17 44 chr3 14664751 14665135 -212859443 - L1MB4 LINE L1 -1 6179 5786 2355 69 0 0 chr3 14665135 14665426 -212859152 + AluY SINE Alu 1 291 -20 225 0 0 0 chr3 14665430 14665455 -212859123 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 3698 147 17 44 chr3 14665455 14665468 -212859110 - L1MB4 LINE L1 -397 5783 5771 2087 106 0 0 chr3 14665468 14665783 -212858795 - AluSx SINE Alu 0 315 1 3698 147 17 44 chr3 14665783 14666100 -212858478 - L1MB4 LINE L1 -409 5771 5478 36 0 0 0 chr3 14666114 14666150 -212858428 + AT_rich Low_complexity Low_complexity 1 36 0 852 194 0 12 chr3 14666150 14666310 -212858268 - FRAM SINE Alu -26 150 1 1172 136 58 43 chr3 14666311 14666457 -212858121 - L1MB4 LINE L1 -706 5474 5332 1564 201 0 3 chr3 14666457 14666760 -212857818 - AluJb SINE Alu -10 302 1 1172 136 58 43 chr3 14666760 14666957 -212857621 - L1MB4 LINE L1 -848 5332 5123 2166 123 0 0 chr3 14666958 14667267 -212857311 - AluSc SINE Alu 0 309 1 2491 205 57 29 chr3 14667957 14668610 -212855968 - L1MB4 LINE L1 -1007 5139 4469 1664 204 0 0 chr3 14668610 14668918 -212855660 - AluJb SINE Alu -4 308 1 524 272 98 53 chr3 14669023 14669127 -212855451 - MIR SINE MIR 0 262 164 2188 73 7 13 chr3 14669127 14669427 -212855151 + AluY SINE Alu 1 298 -13 524 272 98 53 chr3 14669427 14669493 -212855085 - MIR SINE MIR -98 164 102 2128 102 14 0 chr3 14669493 14669787 -212854791 + AluSq SINE Alu 1 298 -15 524 272 98 53 chr3 14669787 14669861 -212854717 - MIR SINE MIR -160 102 6 2136 119 128 44 chr3 14670573 14670986 -212853592 + MER83 LTR ERV1 1 448 0 697 281 95 18 chr3 14671025 14671246 -212853332 + MIR SINE MIR 15 252 -10 2151 23 4 12 chr3 14671481 14671740 -212852838 + L1PA4 LINE L1 5899 6155 0 2087 110 7 3 chr3 14671837 14672146 -212852432 - AluSx SINE Alu -2 310 1 1564 116 86 60 chr3 14672304 14672606 -212851972 - AluSx SINE Alu -2 310 1 1997 139 0 7 chr3 14672757 14673059 -212851519 + AluSx SINE Alu 1 300 -12 228 322 54 47 chr3 14673136 14673285 -212851293 - L2 LINE L2 -567 2747 2598 512 301 44 22 chr3 14673738 14673921 -212850657 - MIR SINE MIR -1 261 75 1477 108 0 0 chr3 14674700 14674903 -212849675 + AluSg/x SINE Alu 88 290 -20 181 283 75 57 chr3 14676126 14676232 -212848346 - MER5C DNA MER1_type -213 111 4 * 204 211 158 0 chr3 14676176 14676233 -212848345 - MIR SINE MIR -130 132 67 2118 117 0 0 chr3 14676329 14676629 -212847949 - AluSx SINE Alu -12 300 1 8487 122 49 53 chr3 14676989 14677118 -212847460 + L1MA3 LINE L1 3653 3781 -2524 2163 99 0 10 chr3 14677118 14677421 -212847157 + AluSx SINE Alu 1 300 -12 8487 122 49 53 chr3 14677421 14679064 -212845514 + L1MA3 LINE L1 3781 5428 -877 5873 65 33 5 chr3 14679064 14679892 -212844686 + SVA Other Other 18 868 -518 8487 122 49 53 chr3 14679892 14679941 -212844637 + L1MA3 LINE L1 5428 5476 -829 6584 58 6 70 chr3 14679941 14680963 -212843615 + SVA Other Other 430 1386 0 8487 122 49 53 chr3 14680963 14681579 -212842999 + L1MA3 LINE L1 5476 6067 -238 1985 134 0 0 chr3 14681579 14681877 -212842701 - AluSx SINE Alu -14 298 1 8487 122 49 53 chr3 14681877 14682088 -212842490 + L1MA3 LINE L1 6067 6277 -28 2040 117 0 3 chr3 14682099 14682397 -212842181 - AluSx SINE Alu -15 297 1 574 252 8 8 chr3 14683624 14683751 -212840827 - MIR SINE MIR -108 154 28 2271 101 0 0 chr3 14683755 14684061 -212840517 - AluSg SINE Alu -4 306 1 180 0 0 0 chr3 14684734 14684754 -212839824 + (CTA)n Simple_repeat Simple_repeat 1 20 0 2183 89 3 10 chr3 14684988 14685301 -212839277 - AluY SINE Alu 0 311 1 1826 139 10 10 chr3 14685546 14685849 -212838729 - AluSx SINE Alu -9 303 1 431 217 67 21 chr3 14685876 14686068 -212838510 - MLT1H LTR MaLR -307 242 20 192 314 157 33 chr3 14686810 14686931 -212837647 + L2 LINE L2 3136 3271 -1 1828 106 50 14 chr3 14687308 14687618 -212836960 - AluSq SINE Alu 0 313 1 517 259 113 8 chr3 14687872 14688111 -212836467 - L1ME4a LINE L1 -38 6083 5820 1613 176 20 7 chr3 14688224 14688519 -212836059 + AluJo SINE Alu 6 304 -8 2393 51 3 13 chr3 14688522 14688836 -212835742 + AluY SINE Alu 1 311 0 2091 145 69 57 chr3 14688837 14689184 -212835394 - MER65A LTR ERV1 -33 412 58 1877 104 46 7 chr3 14689184 14689464 -212835114 - AluSx SINE Alu -21 291 1 2091 145 69 57 chr3 14689464 14689523 -212835055 - MER65A LTR ERV1 -387 58 1 331 273 244 13 chr3 14690237 14690545 -212834033 + L2 LINE L2 2926 3304 -9 424 233 158 14 chr3 14691228 14691374 -212833204 - L2 LINE L2 -16 3297 3131 262 154 0 0 chr3 14691377 14691416 -212833162 + AluJo/FLAM SINE Alu 87 125 -177 2201 77 0 24 chr3 14691417 14691714 -212832864 - AluSc SINE Alu -19 290 1 1915 135 13 7 chr3 14691832 14692136 -212832442 - AluJb SINE Alu -6 306 1 2054 112 7 3 chr3 14692372 14692676 -212831902 - AluSx SINE Alu -7 305 1 1856 137 4 0 chr3 14692952 14693230 -212831348 - AluJb SINE Alu -15 297 19 195 279 0 0 chr3 14693303 14693346 -212831232 + MIR SINE MIR 193 235 -27 1869 132 11 0 chr3 14693379 14693666 -212830912 + AluSx SINE Alu 1 290 -22 1371 65 0 0 chr3 14693848 14694016 -212830562 - AluSg/x SINE Alu -11 301 134 2064 134 0 0 chr3 14694016 14694314 -212830264 - AluSx SINE Alu -14 298 1 1053 159 43 19 chr3 14694931 14695139 -212829439 + L1MB7 LINE L1 5925 6137 -47 214 281 0 53 chr3 14695282 14695339 -212829239 + MIR3 SINE MIR 114 167 -41 773 186 117 0 chr3 14695556 14695701 -212828877 - AluSp SINE Alu -17 296 135 2005 79 6 103 chr3 14695702 14696042 -212828536 - AluSx SINE Alu -5 307 1 186 291 38 63 chr3 14696123 14696202 -212828376 - L3b LINE CR1 -80 1503 1427 1531 153 0 62 chr3 14696248 14696555 -212828023 + AluJo SINE Alu 6 293 -19 2029 131 0 3 chr3 14697249 14697555 -212827023 - AluSx SINE Alu -6 306 2 2197 115 0 0 chr3 14697960 14698264 -212826314 + AluSx SINE Alu 1 304 -8 195 100 0 0 chr3 14699345 14699375 -212825203 + (TTTCC)n Simple_repeat Simple_repeat 2 31 0 426 103 0 15 chr3 14699800 14699868 -212824710 + Alu SINE Alu 2 68 -241 * 442 253 0 11 chr3 14699865 14699956 -212824622 - AluJ/FLAM SINE Alu -221 91 2 332 276 131 14 chr3 14700171 14700316 -212824262 - MIR SINE MIR -55 207 46 459 225 0 42 chr3 14700856 14700976 -212823602 - L2 LINE L2 -19 3294 3180 1586 214 112 47 chr3 14701121 14701554 -212823024 + MLT1D LTR MaLR 1 469 -36 4351 149 75 92 chr3 14701554 14702643 -212821935 + MER11C LTR ERVK 1 1071 0 1586 214 112 47 chr3 14702643 14702681 -212821897 + MLT1D LTR MaLR 469 503 -2 446 167 205 1 chr3 14702685 14702833 -212821745 - L2 LINE L2 -313 3000 2827 1310 146 77 16 chr3 14702919 14703063 -212821515 + L1MB8 LINE L1 5347 5514 -664 2244 106 3 0 chr3 14703063 14703374 -212821204 + AluSx SINE Alu 1 312 0 1310 146 77 16 chr3 14703374 14703475 -212821103 + L1MB8 LINE L1 5514 5607 -571 1289 195 33 0 chr3 14703476 14703717 -212820861 + AluJb SINE Alu 1 249 -63 2065 167 109 13 chr3 14703717 14703858 -212820720 + L1MB8 LINE L1 5679 5805 -373 2290 83 0 3 chr3 14703858 14704158 -212820420 + AluY SINE Alu 1 299 -12 2065 167 109 13 chr3 14704158 14704464 -212820114 + L1MB8 LINE L1 5805 6169 -9 2063 113 10 0 chr3 14704631 14704932 -212819646 + AluSx SINE Alu 3 306 -6 499 172 90 46 chr3 14704976 14705128 -212819450 - MIR SINE MIR -51 211 43 599 114 0 0 chr3 14705461 14705540 -212819038 + AluSq SINE Alu 2 80 -233 2467 46 7 3 chr3 14705544 14705851 -212818727 + AluY SINE Alu 1 308 -3 1558 81 5 5 chr3 14705852 14706062 -212818516 + AluSq SINE Alu 76 285 -28 203 0 37 0 chr3 14706113 14706140 -212818438 + (CA)n Simple_repeat Simple_repeat 2 29 0 482 267 12 121 chr3 14706906 14706994 -212817584 - L2 LINE L2 -2 3311 3215 2291 85 3 0 chr3 14706994 14707299 -212817279 + AluSg SINE Alu 1 306 -4 482 267 12 121 chr3 14707299 14707532 -212817046 - L2 LINE L2 -98 3215 3025 424 233 158 14 chr3 14707527 14707673 -212816905 - L2 LINE L2 -16 3297 3131 * 1152 140 36 59 chr3 14707676 14707716 -212816862 + AluJo SINE Alu 87 126 -186 2280 71 0 20 chr3 14707716 14708013 -212816565 - AluSg SINE Alu -19 291 1 1152 140 36 59 chr3 14708013 14708194 -212816384 + AluJo SINE Alu 126 303 -9 823 157 30 139 chr3 14708343 14708675 -212815903 + AluSx SINE Alu 1 296 -6 350 115 16 0 chr3 14708705 14708766 -212815812 + (TA)n Simple_repeat Simple_repeat 1 62 0 760 215 101 0 chr3 14708767 14708925 -212815653 - MIR SINE MIR -3 259 86 290 294 125 22 chr3 14709014 14709150 -212815428 - MIR SINE MIR -52 210 61 430 304 22 77 chr3 14709177 14709450 -212815128 + MIR SINE MIR 5 262 0 449 226 182 17 chr3 14710269 14710392 -212814186 - MIR SINE MIR -50 212 111 2335 171 88 11 chr3 14710392 14710836 -212813742 + MER66A LTR ERV1 1 478 0 449 226 182 17 chr3 14710836 14710893 -212813685 - MIR SINE MIR -151 111 2 751 237 6 17 chr3 14711064 14711241 -212813337 - MER5B DNA MER1_type 0 178 4 2091 126 0 7 chr3 14711265 14711575 -212813003 + AluSx SINE Alu 1 308 -4 2261 98 3 0 chr3 14711640 14711947 -212812631 - AluSp SINE Alu -5 308 1 2218 91 0 3 chr3 14712121 14712417 -212812161 - AluSc SINE Alu -14 295 1 22 35 0 0 chr3 14712458 14712487 -212812091 + AT_rich Low_complexity Low_complexity 1 29 0 438 251 131 0 chr3 14712546 14712737 -212811841 - L1ME LINE L1 -303 5818 5603 710 139 42 69 chr3 14712750 14712870 -212811708 + FLAM_C SINE Alu 2 124 -83 2110 112 7 0 chr3 14712870 14713165 -212811413 + AluSp SINE Alu 1 297 -16 2444 54 0 6 chr3 14713168 14713481 -212811097 + AluY SINE Alu 1 311 0 710 139 42 69 chr3 14713481 14713566 -212811012 + FLAM_C SINE Alu 126 207 0 755 139 14 83 chr3 14713567 14713711 -212810867 + AluJo SINE Alu 2 135 -177 2010 119 20 3 chr3 14713713 14714016 -212810562 + AluSx SINE Alu 1 308 -4 780 135 23 23 chr3 14714084 14714217 -212810361 - FLAM_C SINE Alu 0 133 1 1549 132 115 65 chr3 14714484 14714609 -212809969 + THE1C LTR MaLR 1 118 -257 2300 93 0 0 chr3 14714609 14714911 -212809667 - AluSg1 SINE Alu -7 302 1 1549 132 115 65 chr3 14714911 14715141 -212809437 + THE1C LTR MaLR 118 374 -1 927 133 21 0 chr3 14715750 14715893 -212808685 - MER46B DNA MER2_type 0 236 91 1646 178 75 42 chr3 14715893 14716253 -212808325 - MER21A LTR ERV1 0 931 560 350 58 0 39 chr3 14716247 14716299 -212808279 - AluJo SINE Alu -8 294 245 * 813 212 41 0 chr3 14716301 14716471 -212808107 - AluJo SINE Alu -135 177 1 1038 137 71 18 chr3 14716471 14716712 -212807866 - MER21B LTR ERV1 -376 487 214 899 141 7 0 chr3 14716720 14716862 -212807716 + AluJo SINE Alu 20 162 -150 346 113 65 0 chr3 14716862 14716924 -212807654 - MER21A LTR ERV1 -863 68 3 770 186 170 0 chr3 14716924 14717112 -212807466 - MER46B DNA MER2_type -141 95 1 2249 99 7 0 chr3 14717304 14717606 -212806972 - AluSq SINE Alu -9 304 1 207 0 0 0 chr3 14717994 14718017 -212806561 + (A)n Simple_repeat Simple_repeat 1 23 0 1795 109 75 31 chr3 14718160 14718317 -212806261 - AluSq SINE Alu -7 306 157 2232 82 0 7 chr3 14718317 14718623 -212805955 - AluY SINE Alu -6 305 2 1795 109 75 31 chr3 14718623 14718758 -212805820 - AluSq SINE Alu -156 157 1 2062 120 0 10 chr3 14718829 14719129 -212805449 + AluSc SINE Alu 1 297 -12 228 322 54 47 chr3 14719206 14719355 -212805223 - L2 LINE L2 -567 2747 2598 482 301 44 22 chr3 14719808 14719991 -212804587 - MIR SINE MIR -1 261 75 1477 108 0 0 chr3 14720770 14720973 -212803605 + AluSg/x SINE Alu 90 292 -20 181 283 75 57 chr3 14722196 14722302 -212802276 - MER5C DNA MER1_type -213 111 4 * 204 211 158 0 chr3 14722246 14722303 -212802275 - MIR SINE MIR -130 132 67 2118 117 0 0 chr3 14722399 14722699 -212801879 - AluSx SINE Alu -12 300 1 8487 144 62 29 chr3 14723059 14723188 -212801390 + L1MA3 LINE L1 3653 3776 -2433 2163 99 0 10 chr3 14723188 14723491 -212801087 + AluSx SINE Alu 1 300 -12 8487 144 62 29 chr3 14723491 14725134 -212799444 + L1MA3 LINE L1 3776 5466 -743 1828 37 37 0 chr3 14725134 14725377 -212799201 + SVA Other Other 18 269 -1117 6313 47 18 24 chr3 14726291 14727134 -212797444 + SVA Other Other 549 1386 0 5699 82 25 22 chr3 14727147 14727750 -212796828 + L1MA3 LINE L1 5461 6068 -237 1985 134 0 0 chr3 14727750 14728048 -212796530 - AluSx SINE Alu -14 298 1 5699 82 25 22 chr3 14728048 14728259 -212796319 + L1MA3 LINE L1 6068 6277 -28 2074 114 0 3 chr3 14728269 14728568 -212796010 - AluSx SINE Alu -14 298 1 574 252 8 8 chr3 14729795 14729922 -212794656 - MIR SINE MIR -108 154 28 2271 101 0 0 chr3 14729926 14730232 -212794346 - AluSg SINE Alu -4 306 1 180 0 0 0 chr3 14730905 14730925 -212793653 + (CTA)n Simple_repeat Simple_repeat 1 20 0 2183 89 3 10 chr3 14731159 14731472 -212793106 - AluY SINE Alu 0 311 1 2342 76 0 3 chr3 14731717 14732020 -212792558 - AluYa5 SINE Alu -9 302 1 943 155 0 42 chr3 14732537 14732705 -212791873 - FRAM SINE Alu -17 159 1 189 74 0 0 chr3 14732705 14732732 -212791846 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 1513 125 4 93 chr3 14732733 14733012 -212791566 - AluSx SINE Alu -30 282 29 1160 182 4 21 chr3 14733012 14733248 -212791330 + AluJo SINE Alu 77 308 -4 1908 128 10 3 chr3 14733265 14733554 -212791024 + AluSx SINE Alu 2 292 -20 819 131 0 51 chr3 14733592 14733729 -212790849 + FLAM_C SINE Alu 2 131 -2 1307 184 4 16 chr3 14733739 14733989 -212790589 + AluJo SINE Alu 3 249 -63 2331 53 0 0 chr3 14734338 14734643 -212789935 - AluY SINE Alu 0 305 1 1441 147 105 11 chr3 14734651 14734917 -212789661 - AluJo SINE Alu -21 291 1 1772 102 98 0 chr3 14735014 14735278 -212789300 - AluSx SINE Alu -22 290 1 653 261 101 20 chr3 14736037 14736236 -212788342 + MER58C DNA MER1_type 1 215 0 223 316 10 41 chr3 14736305 14736403 -212788175 + (TCCA)n Simple_repeat Simple_repeat 1 95 0 271 219 78 0 chr3 14736467 14736531 -212788047 - L2 LINE L2 -51 3221 3153 466 174 81 128 chr3 14736628 14736777 -212787801 + MER103 DNA DNA 24 165 -1 2170 117 0 0 chr3 14737145 14737452 -212787126 + AluSx SINE Alu 1 307 -5 285 196 65 33 chr3 14737474 14737566 -212787012 + MIR SINE MIR 60 154 -108 785 144 7 0 chr3 14737759 14737905 -212786673 + (TCCA)n Simple_repeat Simple_repeat 4 150 0 484 222 95 16 chr3 14738390 14738516 -212786062 - MIR SINE MIR -116 146 11 2258 85 0 3 chr3 14738790 14739096 -212785482 - AluY SINE Alu -6 305 1 222 305 12 0 chr3 14739136 14739218 -212785360 + (TA)n Simple_repeat Simple_repeat 2 84 0 1927 105 3 86 chr3 14739734 14740059 -212784519 + AluSx SINE Alu 1 298 -14 2126 110 0 7 chr3 14740259 14740558 -212784020 + AluSx SINE Alu 1 297 -15 265 313 114 30 chr3 14740570 14740736 -212783842 - MIR SINE MIR -35 227 48 2313 56 0 3 chr3 14740760 14741046 -212783532 - AluY SINE Alu -5 306 22 343 270 63 48 chr3 14741096 14741222 -212783356 - MIR SINE MIR -88 174 47 27 0 0 0 chr3 14741324 14741351 -212783227 + AT_rich Low_complexity Low_complexity 1 27 0 247 353 85 0 chr3 14741872 14742025 -212782553 + L1ME LINE L1 5534 5699 -422 2123 92 0 26 chr3 14742035 14742339 -212782239 - AluSx SINE Alu -16 296 1 827 206 0 0 chr3 14742371 14742512 -212782066 - FRAM SINE Alu -35 141 1 1873 188 101 3 chr3 14742516 14742894 -212781684 - L1ME1 LINE L1 -62 6104 5690 2050 106 10 0 chr3 14742917 14743210 -212781368 + AluSx SINE Alu 1 296 -16 341 250 32 90 chr3 14743335 14743403 -212781175 + MIR SINE MIR 114 184 -78 849 165 0 88 chr3 14743403 14743585 -212780993 - FRAM SINE Alu 0 166 1 341 250 32 90 chr3 14743585 14743672 -212780906 + MIR SINE MIR 184 260 -2 934 187 24 57 chr3 14743687 14743840 -212780738 - AluJo SINE Alu -27 285 139 1956 131 3 13 chr3 14743840 14744154 -212780424 - AluSx SINE Alu -1 311 1 934 187 24 57 chr3 14744154 14744209 -212780369 - AluJo SINE Alu -173 139 84 22 35 0 0 chr3 14744242 14744271 -212780307 + AT_rich Low_complexity Low_complexity 1 29 0 1879 147 0 3 chr3 14744399 14744691 -212779887 - AluSx SINE Alu -21 291 1 715 187 8 0 chr3 14744788 14744911 -212779667 - FLAM_C SINE Alu -17 126 3 1360 137 26 13 chr3 14745276 14745509 -212779069 + AluJb SINE Alu 66 301 -11 2228 74 0 17 chr3 14745839 14746138 -212778440 - AluSp SINE Alu -19 294 1 2047 103 0 41 chr3 14746314 14746633 -212777945 + AluSq SINE Alu 1 306 -7 384 313 27 34 chr3 14746675 14746822 -212777756 + MIR SINE MIR 98 243 -19 2296 65 3 19 chr3 14747105 14747415 -212777163 - AluSp SINE Alu -8 305 1 2130 122 0 3 chr3 14747543 14747846 -212776732 - AluSx SINE Alu -10 302 1 2346 82 0 0 chr3 14748373 14748676 -212775902 - AluSx SINE Alu -9 303 1 505 215 237 30 chr3 14748677 14748804 -212775774 - MLT1H LTR MaLR -61 488 389 1865 157 3 3 chr3 14748804 14749116 -212775462 - AluJo SINE Alu 0 312 1 505 215 237 30 chr3 14749116 14749335 -212775243 - MLT1H LTR MaLR -160 389 20 192 314 157 33 chr3 14750077 14750198 -212774380 + L2 LINE L2 3136 3271 -1 1828 106 50 14 chr3 14750575 14750885 -212773693 - AluSq SINE Alu 0 313 1 517 259 113 8 chr3 14751139 14751378 -212773200 - L1ME4a LINE L1 -38 6083 5820 1595 180 20 7 chr3 14751491 14751786 -212772792 + AluJo SINE Alu 6 304 -8 2216 97 0 7 chr3 14751789 14752088 -212772490 + AluSx SINE Alu 1 297 -15 1976 130 3 0 chr3 14752185 14752493 -212772085 - AluSg SINE Alu -1 309 1 1837 119 75 10 chr3 14752564 14752699 -212771879 + AluSq SINE Alu 1 126 -187 2232 82 0 7 chr3 14752699 14753005 -212771573 + AluY SINE Alu 2 305 -6 1837 119 75 10 chr3 14753005 14753162 -212771416 + AluSq SINE Alu 126 312 -1 207 0 0 0 chr3 14753305 14753328 -212771250 + (T)n Simple_repeat Simple_repeat 1 23 0 2241 100 7 0 chr3 14753716 14754017 -212770561 + AluSq SINE Alu 1 303 -10 770 186 170 0 chr3 14754211 14754399 -212770179 + MER46B DNA MER2_type 1 95 -141 346 113 65 0 chr3 14754399 14754461 -212770117 + MER21B LTR ERV1 3 68 -863 899 141 7 0 chr3 14754461 14754603 -212769975 - AluJo SINE Alu -150 162 20 1038 137 71 18 chr3 14754611 14754852 -212769726 + MER21B LTR ERV1 214 487 -376 350 176 32 12 chr3 14754852 14755076 -212769502 + AluJo SINE Alu 1 294 -8 * 1646 178 75 42 chr3 14755070 14755430 -212769148 + MER21A LTR ERV1 560 931 0 927 133 21 0 chr3 14755430 14755573 -212769005 + MER46B DNA MER2_type 91 236 0 1549 132 115 65 chr3 14756182 14756412 -212768166 - THE1C LTR MaLR -1 374 118 2300 93 0 0 chr3 14756412 14756714 -212767864 + AluSg1 SINE Alu 1 302 -7 1549 132 115 65 chr3 14756714 14756839 -212767739 - THE1C LTR MaLR -257 118 1 780 135 23 23 chr3 14757106 14757239 -212767339 + FLAM_C SINE Alu 1 133 0 2010 119 20 3 chr3 14757306 14757609 -212766969 - AluSx SINE Alu -4 308 1 755 139 14 83 chr3 14757611 14757755 -212766823 - AluJo SINE Alu -177 135 2 222 219 0 16 chr3 14757756 14757820 -212766758 + T-rich Low_complexity Low_complexity 1 63 0 709 139 42 69 chr3 14757822 14757841 -212766737 - FLAM_C SINE Alu -171 141 123 2435 55 0 6 chr3 14757841 14758153 -212766425 - AluY SINE Alu -1 310 1 2138 108 7 0 chr3 14758156 14758451 -212766127 - AluSp SINE Alu -16 297 1 709 139 42 69 chr3 14758451 14758571 -212766007 - FLAM_C SINE Alu -191 121 2 438 251 131 0 chr3 14758584 14758775 -212765803 + L1ME LINE L1 5603 5818 -303 22 35 0 0 chr3 14758834 14758863 -212765715 + AT_rich Low_complexity Low_complexity 1 29 0 2210 92 0 3 chr3 14758904 14759199 -212765379 + AluSc SINE Alu 1 294 -15 2274 94 3 0 chr3 14759373 14759680 -212764898 + AluSp SINE Alu 1 308 -5 2099 125 0 6 chr3 14759745 14760056 -212764522 - AluSx SINE Alu -3 309 1 751 237 6 17 chr3 14760080 14760257 -212764321 + MER5B DNA MER1_type 4 178 0 449 226 182 17 chr3 14760428 14760485 -212764093 + MIR SINE MIR 2 48 -214 2336 171 88 11 chr3 14760485 14760929 -212763649 - MER66A LTR ERV1 0 478 1 449 226 182 17 chr3 14760929 14761052 -212763526 + MIR SINE MIR 48 212 -50 449 300 22 77 chr3 14761871 14762144 -212762434 - MIR SINE MIR 0 262 5 286 294 125 22 chr3 14762171 14762307 -212762271 + MIR SINE MIR 61 210 -52 752 215 101 0 chr3 14762396 14762554 -212762024 + MIR SINE MIR 86 259 -3 368 111 16 0 chr3 14762555 14762618 -212761960 + (TA)n Simple_repeat Simple_repeat 1 64 0 1855 141 39 0 chr3 14762650 14762933 -212761645 - AluJo SINE Alu -18 294 1 1275 147 35 56 chr3 14763073 14763263 -212761315 - AluJo SINE Alu 0 312 126 2432 67 0 20 chr3 14763263 14763560 -212761018 + AluSg SINE Alu 1 291 -19 1275 147 35 56 chr3 14763560 14763600 -212760978 - AluJo SINE Alu -186 126 87 424 233 158 14 chr3 14763603 14763749 -212760829 + L2 LINE L2 3131 3297 -16 * 468 274 12 118 chr3 14763744 14763976 -212760602 + L2 LINE L2 3025 3215 -98 2376 92 3 0 chr3 14763976 14764279 -212760299 - AluSg SINE Alu -6 304 1 468 274 12 118 chr3 14764279 14764367 -212760211 + L2 LINE L2 3215 3311 -2 203 0 37 0 chr3 14765133 14765160 -212759418 + (TG)n Simple_repeat Simple_repeat 2 29 0 1661 81 5 5 chr3 14765211 14765421 -212759157 - AluSq SINE Alu -28 285 76 2592 46 7 3 chr3 14765422 14765727 -212758851 - AluY SINE Alu -5 306 1 614 114 0 0 chr3 14765731 14765810 -212758768 - AluSq SINE Alu -233 80 2 497 172 90 46 chr3 14766143 14766295 -212758283 + MIR SINE MIR 43 211 -51 2211 113 10 0 chr3 14766339 14766640 -212757938 - AluSx SINE Alu -6 306 3 1957 174 107 11 chr3 14766807 14767113 -212757465 - L1MB8 LINE L1 -9 6169 5805 2406 87 0 3 chr3 14767113 14767413 -212757165 - AluY SINE Alu -12 299 1 1957 174 107 11 chr3 14767413 14767554 -212757024 - L1MB8 LINE L1 -373 5805 5679 1411 195 33 0 chr3 14767554 14767795 -212756783 - AluJb SINE Alu -63 249 1 1236 146 77 16 chr3 14767796 14767897 -212756681 - L1MB8 LINE L1 -571 5607 5514 2411 103 3 0 chr3 14767897 14768208 -212756370 - AluSx SINE Alu 0 312 1 1236 146 77 16 chr3 14768208 14768352 -212756226 - L1MB8 LINE L1 -664 5514 5347 461 167 205 1 chr3 14768438 14768586 -212755992 + L2 LINE L2 2827 3000 -313 1618 211 113 43 chr3 14768590 14768628 -212755950 - MLT1D LTR MaLR -2 503 469 4425 148 75 92 chr3 14768628 14769717 -212754861 - MER11C LTR ERVK 0 1071 1 1618 211 113 43 chr3 14769717 14770148 -212754430 - MLT1D LTR MaLR -36 469 1 455 222 24 32 chr3 14770292 14770418 -212754160 + L2 LINE L2 3138 3262 -10 344 276 131 14 chr3 14770953 14771098 -212753480 + MIR SINE MIR 46 207 -55 582 189 0 0 chr3 14771313 14771403 -212753175 + AluJ/FLAM SINE Alu 2 91 -221 519 90 0 0 chr3 14771400 14771467 -212753111 - Alu SINE Alu -243 68 2 * 1414 113 0 0 chr3 14771468 14771654 -212752924 - AluSg/x SINE Alu -16 296 111 2153 112 13 16 chr3 14771654 14771787 -212752791 + AluSq SINE Alu 1 133 -180 2442 83 10 0 chr3 14771787 14772087 -212752491 + AluY SINE Alu 1 303 -8 2153 112 13 16 chr3 14772087 14772262 -212752316 + AluSq SINE Alu 129 309 0 2311 102 7 0 chr3 14772262 14772566 -212752012 + AluSg SINE Alu 5 310 0 1224 213 8 12 chr3 14772665 14772909 -212751669 + MIR SINE MIR 20 262 0 568 266 24 16 chr3 14773397 14773415 -212751163 + MIR SINE MIR 17 33 -215 2647 30 0 13 chr3 14773415 14773719 -212750859 + AluY SINE Alu 1 300 -11 568 266 24 16 chr3 14773719 14773871 -212750707 + MIR SINE MIR 33 187 -61 219 243 122 27 chr3 14773912 14773986 -212750592 - MIR SINE MIR -64 144 64 1434 111 55 0 chr3 14774070 14774287 -212750291 + MER30 DNA MER1_type 2 230 0 2448 73 0 10 chr3 14774388 14774688 -212749890 - AluY SINE Alu -14 297 1 371 304 138 7 chr3 14775018 14775156 -212749422 - MIR SINE MIR -79 183 28 593 214 0 30 chr3 14775747 14775878 -212748700 + FLAM_A SINE Alu 1 127 -6 1343 37 0 0 chr3 14775883 14776046 -212748532 + L1PA2 LINE L1 5993 6155 0 2284 58 44 14 chr3 14776058 14776351 -212748227 + AluY SINE Alu 1 302 -9 2006 142 3 7 chr3 14776361 14776656 -212747922 + AluSx SINE Alu 1 294 -18 1399 73 0 0 chr3 14777218 14777383 -212747195 - AluSg/x SINE Alu -14 298 134 2150 137 0 3 chr3 14777383 14777682 -212746896 - AluSx SINE Alu -14 298 1 984 159 43 19 chr3 14778299 14778507 -212746071 + L1MB7 LINE L1 5925 6137 -47 212 281 0 53 chr3 14778650 14778707 -212745871 + MIR3 SINE MIR 114 167 -41 797 186 117 0 chr3 14778924 14779069 -212745509 - AluSp SINE Alu -17 296 135 2390 72 16 16 chr3 14779070 14779377 -212745201 - AluSp SINE Alu -5 308 2 1788 136 30 3 chr3 14779378 14779727 -212744851 - L1M2 LINE L1 -532 5780 5312 2044 47 4 12 chr3 14779991 14780249 -212744329 + L1PA4 LINE L1 5899 6154 -1 2256 101 10 3 chr3 14780348 14780654 -212743924 - AluY SINE Alu -3 308 1 435 62 10 82 chr3 14780830 14780868 -212743710 - L1MB3 LINE L1 0 6183 6144 1800 123 0 12 chr3 14780868 14781121 -212743457 - AluSx SINE Alu -14 298 49 435 62 10 82 chr3 14781121 14781179 -212743399 - L1MB3 LINE L1 -39 6144 6094 744 41 16 73 chr3 14781201 14781324 -212743254 + L1PA4 LINE L1 6040 6155 0 1019 159 12 114 chr3 14781338 14781583 -212742995 + AluJo SINE Alu 86 305 -7 1511 154 17 80 chr3 14781589 14781888 -212742690 - AluJo SINE Alu -30 282 3 335 377 84 0 chr3 14782154 14782321 -212742257 + L2 LINE L2 2568 2748 -566 2203 95 0 3 chr3 14782345 14782628 -212741950 + AluSg SINE Alu 18 299 -11 2426 100 0 3 chr3 14783536 14783845 -212740733 - AluSc SINE Alu 0 309 2 1280 176 10 0 chr3 14783880 14784079 -212740499 - AluJb SINE Alu -25 287 87 1934 175 0 0 chr3 14784121 14784413 -212740165 + AluJo SINE Alu 1 292 -20 313 318 17 26 chr3 14785352 14785802 -212738776 + CT-rich Low_complexity Low_complexity 1 445 0 2239 138 0 0 chr3 14786556 14786868 -212737710 + AluSx SINE Alu 1 312 0 2106 111 27 10 chr3 14786901 14787198 -212737380 + AluSx SINE Alu 1 302 -10 335 284 149 14 chr3 14787638 14787786 -212736792 + MIR SINE MIR 22 189 -73 1420 180 103 4 chr3 14787886 14788158 -212736420 + AluJo SINE Alu 1 299 -13 1255 184 67 67 chr3 14788477 14788508 -212736070 + L1MB4 LINE L1 5806 5836 -344 2636 65 0 0 chr3 14788508 14788817 -212735761 + AluSc SINE Alu 1 309 0 1950 99 78 14 chr3 14788827 14789109 -212735469 + AluSg1 SINE Alu 1 300 -9 1255 184 67 67 chr3 14789109 14789441 -212735137 + L1MB4 LINE L1 5844 6180 0 2153 122 0 3 chr3 14789548 14789843 -212734735 - AluSx SINE Alu -18 294 1 254 235 235 0 chr3 14790187 14790285 -212734293 - L2 LINE L2 -1 3312 3192 * 289 226 49 78 chr3 14790269 14790371 -212734207 + L2 LINE L2 3214 3312 -1 213 362 43 0 chr3 14790398 14790492 -212734086 + MIR SINE MIR 49 146 -116 843 196 162 25 chr3 14790750 14790954 -212733624 - AluJo SINE Alu -5 307 76 452 152 10 0 chr3 14790954 14791053 -212733525 + (TG)n Simple_repeat Simple_repeat 2 101 0 441 88 0 0 chr3 14791060 14791117 -212733461 - FLAM SINE Alu -36 107 51 665 154 19 0 chr3 14791154 14791258 -212733320 - FLAM_C SINE Alu -36 107 2 518 167 7 80 chr3 14791260 14791381 -212733197 + LTR37A LTR ERV1 247 358 -68 1916 149 45 0 chr3 14791381 14791670 -212732908 - AluSx SINE Alu -10 302 1 518 167 7 80 chr3 14791670 14791686 -212732892 + LTR37A LTR ERV1 358 374 -52 449 114 0 0 chr3 14792292 14792362 -212732216 + L1MB7 LINE L1 6063 6132 -52 303 113 0 0 chr3 14792644 14792697 -212731881 + Alu SINE Alu 249 301 -1 890 143 8 0 chr3 14792908 14793034 -212731544 + FLAM_C SINE Alu 1 127 -16 21 36 0 0 chr3 14793109 14793137 -212731441 + AT_rich Low_complexity Low_complexity 1 28 0 1841 121 0 112 chr3 14793358 14793698 -212730880 - AluJo SINE Alu -10 302 1 301 267 99 15 chr3 14793701 14793832 -212730746 - L2 LINE L2 -12 3301 3160 195 42 0 0 chr3 14793875 14793899 -212730679 + (TTAAA)n Simple_repeat Simple_repeat 3 26 0 615 277 106 2 chr3 14794226 14794445 -212730133 - MIR SINE MIR -18 244 9 366 217 26 11 chr3 14795379 14795535 -212729043 + MIR SINE MIR 3 225 -37 363 344 166 13 chr3 14795567 14795869 -212728709 - L2 LINE L2 -1 3271 2924 202 315 11 22 chr3 14795975 14796064 -212728514 + L2 LINE L2 2949 3036 -236 2442 81 0 3 chr3 14796065 14796372 -212728206 + AluY SINE Alu 1 306 -5 576 188 7 69 chr3 14796462 14796606 -212727972 + FLAM_C SINE Alu 2 136 -7 1929 148 20 3 chr3 14796610 14796913 -212727665 + AluSx SINE Alu 1 308 -4 793 135 23 23 chr3 14796980 14797113 -212727465 - FLAM_C SINE Alu 0 133 1 1571 132 115 65 chr3 14797380 14797505 -212727073 + THE1C LTR MaLR 1 118 -257 2449 93 0 0 chr3 14797505 14797807 -212726771 - AluSg1 SINE Alu -7 302 1 1571 132 115 65 chr3 14797807 14798037 -212726541 + THE1C LTR MaLR 118 374 -1 884 133 21 0 chr3 14798646 14798789 -212725789 - MER46B DNA MER2_type 0 236 91 1522 178 75 42 chr3 14798789 14799149 -212725429 - MER21A LTR ERV1 0 931 560 330 58 0 39 chr3 14799143 14799195 -212725383 - AluJo SINE Alu -8 294 245 * 896 212 41 0 chr3 14799197 14799367 -212725211 - AluJo SINE Alu -135 177 1 970 137 71 18 chr3 14799367 14799608 -212724970 - MER21B LTR ERV1 -376 487 214 976 145 7 0 chr3 14799613 14799758 -212724820 + AluJo SINE Alu 17 162 -150 328 113 65 0 chr3 14799758 14799820 -212724758 - MER21A LTR ERV1 -863 68 3 725 191 170 0 chr3 14799820 14800008 -212724570 - MER46B DNA MER2_type -141 95 1 2392 100 7 0 chr3 14800202 14800503 -212724075 - AluSq SINE Alu -10 303 1 207 0 0 0 chr3 14800891 14800914 -212723664 + (A)n Simple_repeat Simple_repeat 1 23 0 1930 122 75 14 chr3 14801057 14801214 -212723364 - AluSq SINE Alu -1 312 166 2380 82 0 7 chr3 14801214 14801520 -212723058 - AluY SINE Alu -6 305 2 1930 122 75 14 chr3 14801520 14801656 -212722922 - AluSq SINE Alu -147 166 1 2480 50 0 0 chr3 14801728 14802033 -212722545 + AluY SINE Alu 1 305 0 1432 184 4 16 chr3 14802382 14802632 -212721946 - AluJo SINE Alu -63 249 3 838 131 0 51 chr3 14802642 14802779 -212721799 - FLAM_C SINE Alu -2 131 2 2028 132 10 3 chr3 14802817 14803106 -212721472 - AluSx SINE Alu -20 292 2 597 138 21 0 chr3 14803293 14803387 -212721191 - AluY SINE Alu -214 97 2 1553 194 75 23 chr3 14803387 14803512 -212721066 + L1M3 LINE L1 4726 4843 -1303 2388 64 0 55 chr3 14803512 14803824 -212720754 - AluY SINE Alu -16 295 1 1553 194 75 23 chr3 14803824 14804084 -212720494 + L1M3 LINE L1 4843 5131 -1015 2210 101 9 28 chr3 14804764 14805081 -212719497 + AluSx SINE Alu 1 311 -1 1832 161 44 48 chr3 14805520 14805563 -212719015 + L1M3 LINE L1 5106 5148 -1032 2140 133 3 0 chr3 14805563 14805863 -212718715 + AluSc SINE Alu 1 301 -8 1832 161 44 48 chr3 14805863 14806043 -212718535 + L1M3 LINE L1 5148 5327 -853 1716 201 0 3 chr3 14806043 14806346 -212718232 + AluJb SINE Alu 1 302 -10 1832 161 44 48 chr3 14806346 14806503 -212718075 + L1M3 LINE L1 5327 5483 -697 879 208 0 0 chr3 14806503 14806662 -212717916 + FRAM SINE Alu 1 159 -7 1832 161 44 48 chr3 14806662 14807019 -212717559 + L1M3 LINE L1 5483 5796 -384 2223 113 0 0 chr3 14807020 14807343 -212717235 + AluSx SINE Alu 1 312 0 28 0 0 0 chr3 14807346 14807374 -212717204 + AT_rich Low_complexity Low_complexity 1 28 0 515 246 87 56 chr3 14807499 14807522 -212717056 + MIR SINE MIR 62 83 -179 2277 102 14 0 chr3 14807522 14807816 -212716762 - AluSq SINE Alu -15 298 1 515 246 87 56 chr3 14807816 14807882 -212716696 + MIR SINE MIR 83 145 -117 2330 73 7 13 chr3 14807882 14808182 -212716396 - AluY SINE Alu -13 298 1 515 246 87 56 chr3 14808182 14808286 -212716292 + MIR SINE MIR 145 262 0 2150 104 31 0 chr3 14808391 14808678 -212715900 + AluSx SINE Alu 1 296 -16 2449 68 7 10 chr3 14809039 14809348 -212715230 - AluY SINE Alu -3 308 1 2448 83 0 0 chr3 14809753 14810055 -212714523 + AluSx SINE Alu 2 303 -9 299 210 75 28 chr3 14810577 14810733 -212713845 - MLT1H LTR MaLR -326 223 20 192 314 157 33 chr3 14811478 14811599 -212712979 + L2 LINE L2 3136 3271 -1 2238 88 13 0 chr3 14811987 14812292 -212712286 - AluY SINE Alu -2 309 1 2022 116 0 28 chr3 14812342 14812661 -212711917 - AluSg SINE Alu 0 310 1 305 170 0 19 chr3 14812789 14812842 -212711736 + MER5B DNA MER1_type 5 56 -122 650 245 11 5 chr3 14813242 14813430 -212711148 + AluSx SINE Alu 5 193 -119 2088 105 0 32 chr3 14813910 14814225 -212710353 - AluSx SINE Alu -7 305 1 708 172 52 0 chr3 14814422 14814556 -212710022 - FLAM_C SINE Alu -1 142 2 1705 153 7 7 chr3 14814568 14814855 -212709723 - AluJo SINE Alu -25 287 1 921 116 7 14 chr3 14815176 14815323 -212709255 + AluSg/x SINE Alu 157 302 -8 22 0 0 0 chr3 14815505 14815527 -212709051 + AT_rich Low_complexity Low_complexity 1 22 0 717 218 0 0 chr3 14816993 14817126 -212707452 + FLAM_C SINE Alu 6 138 -5 2146 91 7 0 chr3 14817127 14817412 -212707166 + AluSg SINE Alu 3 289 -21 331 228 13 19 chr3 14818530 14818688 -212705890 + C-rich Low_complexity Low_complexity 3 159 0 374 280 37 0 chr3 14818706 14818813 -212705765 - L1M4 LINE L1 -2963 3183 3073 7094 45 9 48 chr3 14818819 14820356 -212704222 + SVA Other Other 29 1386 0 5699 82 25 22 chr3 14820369 14820972 -212703606 + L1MA3 LINE L1 5461 6068 -237 1985 134 0 0 chr3 14820972 14821270 -212703308 - AluSx SINE Alu -14 298 1 5699 82 25 22 chr3 14821270 14821481 -212703097 + L1MA3 LINE L1 6068 6277 -28 2074 114 0 3 chr3 14821491 14821790 -212702788 - AluSx SINE Alu -14 298 1 574 252 8 8 chr3 14823017 14823144 -212701434 - MIR SINE MIR -108 154 28 2271 101 0 0 chr3 14823148 14823454 -212701124 - AluSg SINE Alu -4 306 1 180 0 0 0 chr3 14824127 14824147 -212700431 + (CTA)n Simple_repeat Simple_repeat 1 20 0 2183 89 3 10 chr3 14824381 14824694 -212699884 - AluY SINE Alu 0 311 1 2342 76 0 3 chr3 14824939 14825242 -212699336 - AluYa5 SINE Alu -9 302 1 943 155 0 42 chr3 14825759 14825927 -212698651 - FRAM SINE Alu -17 159 1 189 74 0 0 chr3 14825927 14825954 -212698624 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 1525 125 4 93 chr3 14825955 14826234 -212698344 - AluSx SINE Alu -30 282 29 1193 178 4 21 chr3 14826234 14826470 -212698108 + AluJo SINE Alu 77 308 -4 1908 128 10 3 chr3 14826487 14826776 -212697802 + AluSx SINE Alu 2 292 -20 819 131 0 51 chr3 14826814 14826951 -212697627 + FLAM_C SINE Alu 2 131 -2 1307 184 4 16 chr3 14826961 14827211 -212697367 + AluJo SINE Alu 3 249 -63 2323 53 0 0 chr3 14827560 14827865 -212696713 - AluY SINE Alu 0 305 1 1705 109 87 11 chr3 14827893 14828168 -212696410 + AluSx SINE Alu 1 296 -16 1858 154 0 10 chr3 14828176 14828474 -212696104 + AluSx SINE Alu 7 301 -11 1982 83 3 73 chr3 14828523 14828836 -212695742 - AluSg SINE Alu -19 291 1 2222 110 0 0 chr3 14829115 14829423 -212695155 - AluSc SINE Alu 0 309 2 1273 160 5 0 chr3 14829458 14829658 -212694920 - AluJb SINE Alu -25 287 87 1791 175 0 0 chr3 14829700 14829992 -212694586 + AluJo SINE Alu 1 292 -20 817 289 174 60 chr3 14831214 14832099 -212692479 + L2 LINE L2 2233 3232 -40 1831 163 0 0 chr3 14832156 14832451 -212692127 + AluJb SINE Alu 1 295 -17 261 174 0 0 chr3 14832451 14832497 -212692081 - MLT2D LTR ERVL -365 49 4 1481 216 24 0 chr3 14832521 14832817 -212691761 + L1ME LINE L1 5374 5676 -488 2413 63 0 0 chr3 14832818 14833119 -212691459 + AluY SINE Alu 1 301 -10 2059 111 0 0 chr3 14833223 14833503 -212691075 - AluSg SINE Alu -30 280 1 1707 149 10 36 chr3 14833503 14833811 -212690767 - AluJb SINE Alu -11 301 1 210 234 0 0 chr3 14833886 14833933 -212690645 + L2 LINE L2 3267 3313 0 204 375 68 17 chr3 14834036 14834212 -212690366 - L2 LINE L2 -558 2756 2572 2265 97 0 0 chr3 14834592 14834901 -212689677 - AluSc SINE Alu 0 309 1 1545 165 49 0 chr3 14835704 14835989 -212688589 - AluSx SINE Alu -13 299 1 22 0 0 0 chr3 14836493 14836515 -212688063 + AT_rich Low_complexity Low_complexity 1 22 0 2223 98 0 3 chr3 14836862 14837158 -212687420 - AluSg SINE Alu -15 295 1 2167 94 0 7 chr3 14838212 14838511 -212686067 + AluSq SINE Alu 1 297 -16 228 35 0 0 chr3 14838677 14838706 -212685872 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1903 121 8 0 chr3 14838714 14838979 -212685599 - AluSq SINE Alu -46 267 1 426 283 96 26 chr3 14839092 14839275 -212685303 - MIR SINE MIR -50 212 20 2271 87 3 16 chr3 14839656 14839967 -212684611 - AluSg SINE Alu -1 309 3 1831 174 0 0 chr3 14840287 14840591 -212683987 - AluJb SINE Alu -7 305 2 562 184 0 0 chr3 14840603 14840706 -212683872 + AluJb SINE Alu 203 305 -7 756 101 0 0 chr3 14841026 14841125 -212683453 + AluSg SINE Alu 3 101 -209 1888 160 3 0 chr3 14841896 14842203 -212682375 - AluJb SINE Alu -4 308 1 23 33 0 0 chr3 14843383 14843413 -212681165 + AT_rich Low_complexity Low_complexity 1 30 0 204 240 20 0 chr3 14844115 14844165 -212680413 - MIR SINE MIR -99 163 113 756 71 0 0 chr3 14845090 14845188 -212679390 - AluY SINE Alu -9 302 205 9164 42 2 1 chr3 14846097 14847167 -212677411 - MER11C LTR ERVK 0 1071 1 668 270 81 16 chr3 14847366 14847551 -212677027 - MIR SINE MIR -65 197 1 717 218 0 0 chr3 14848557 14848690 -212675888 + FLAM_C SINE Alu 6 138 -5 2187 106 0 0 chr3 14848691 14848984 -212675594 + AluSg SINE Alu 3 295 -15 1362 159 83 25 chr3 14849125 14849402 -212675176 + AluJo SINE Alu 1 293 -19 1907 130 7 7 chr3 14849593 14849885 -212674693 - AluSx SINE Alu -20 292 1 2140 92 14 0 chr3 14849999 14850291 -212674287 + AluSx SINE Alu 1 296 -16 2087 115 3 3 chr3 14850589 14850894 -212673684 - AluSc SINE Alu -4 305 1 2152 121 0 3 chr3 14851347 14851654 -212672924 - AluSg SINE Alu -4 306 1 2319 54 0 63 chr3 14851754 14852085 -212672493 + AluY SINE Alu 1 310 -1 1589 160 0 47 chr3 14852197 14852332 -212672246 + AluJb SINE Alu 12 152 -160 2190 98 3 0 chr3 14852332 14852637 -212671941 + AluSp SINE Alu 1 306 -7 1589 160 0 47 chr3 14852637 14852801 -212671777 + AluJb SINE Alu 152 297 -15 490 88 0 15 chr3 14854144 14854234 -212670344 - Alu SINE Alu 0 310 222 815 108 8 8 chr3 14854234 14854363 -212670215 - AluSq/x SINE Alu -184 129 1 191 257 86 76 chr3 14854405 14854510 -212670068 - MIR SINE MIR -37 225 120 2156 102 3 3 chr3 14854680 14854983 -212669595 + AluSx SINE Alu 1 303 -9 441 0 0 0 chr3 14854984 14855033 -212669545 + (TA)n Simple_repeat Simple_repeat 1 49 0 639 227 35 0 chr3 14855038 14855179 -212669399 + MER5A DNA MER1_type 5 150 -39 2012 104 31 0 chr3 14855843 14856130 -212668448 + AluSx SINE Alu 1 296 -16 2388 52 7 3 chr3 14856490 14856795 -212667783 - AluY SINE Alu -3 308 3 522 96 0 0 chr3 14856882 14856955 -212667623 + AluS SINE Alu 6 78 -234 626 183 0 40 chr3 14858031 14858157 -212666421 + FLAM_A SINE Alu 21 141 -1 2124 95 3 0 chr3 14858714 14859008 -212665570 - AluSg SINE Alu -9 301 7 2224 69 3 3 chr3 14859039 14859330 -212665248 - AluY SINE Alu -20 291 1 2346 82 0 0 chr3 14859488 14859791 -212664787 + AluSx SINE Alu 1 303 -9 2131 122 0 3 chr3 14860318 14860621 -212663957 + AluSx SINE Alu 1 312 0 2296 65 3 19 chr3 14860749 14861059 -212663519 + AluSp SINE Alu 1 305 -8 384 313 27 34 chr3 14861342 14861489 -212663089 - MIR SINE MIR -19 243 98 2047 103 0 41 chr3 14861531 14861850 -212662728 - AluSq SINE Alu -7 306 1 2228 74 0 17 chr3 14862026 14862325 -212662253 + AluSp SINE Alu 1 294 -19 1786 144 17 7 chr3 14862655 14862953 -212661625 - AluJb SINE Alu -11 301 1 1905 118 17 7 chr3 14862993 14863280 -212661298 + AluSx SINE Alu 1 290 -22 2135 112 0 3 chr3 14863437 14863741 -212660837 + AluSq SINE Alu 1 303 -10 180 111 0 0 chr3 14863741 14863768 -212660810 + (GGGA)n Simple_repeat Simple_repeat 1 27 0 1668 114 28 48 chr3 14863850 14864139 -212660439 + AluJb SINE Alu 1 283 -29 2364 71 0 7 chr3 14864139 14864447 -212660131 + AluSx SINE Alu 1 306 -6 185 290 129 32 chr3 14865327 14865451 -212659127 + L2 LINE L2 2625 2760 -554 240 197 115 0 chr3 14865552 14865613 -212658965 - L2 LINE L2 -455 2859 2792 1519 153 34 27 chr3 14866171 14866433 -212658145 + AluJo SINE Alu 1 264 -48 1736 151 13 10 chr3 14866601 14866905 -212657673 - AluSx SINE Alu -7 305 1 2055 103 14 0 chr3 14867187 14867479 -212657099 + AluSx SINE Alu 6 301 -11 278 190 0 127 chr3 14867648 14867703 -212656875 + Tigger2 DNA MER2_type 1 31 -403 1865 150 3 3 chr3 14867703 14867996 -212656582 - AluSx SINE Alu -19 293 1 278 190 0 127 chr3 14867996 14868019 -212656559 + Tigger2 DNA MER2_type 31 55 -379 * 1236 118 98 10 chr3 14868003 14868206 -212656372 + Tigger2 DNA MER2_type 2267 2487 -231 434 99 56 14 chr3 14868206 14868310 -212656268 - AluSc SINE Alu 0 311 205 * 486 73 0 0 chr3 14868305 14868373 -212656205 + Alu SINE Alu 236 303 -9 2005 132 0 3 chr3 14868383 14868678 -212655900 + AluSx SINE Alu 1 294 -18 1319 73 0 0 chr3 14869240 14869405 -212655173 - AluSg/x SINE Alu -14 296 132 2064 134 0 0 chr3 14869405 14869703 -212654875 - AluSx SINE Alu -14 298 1 1053 159 43 19 chr3 14870320 14870528 -212654050 + L1MB7 LINE L1 5925 6137 -47 214 281 0 53 chr3 14870671 14870728 -212653850 + MIR3 SINE MIR 114 167 -41 773 186 117 0 chr3 14870945 14871090 -212653488 - AluSp SINE Alu -17 296 135 2005 79 6 103 chr3 14871091 14871431 -212653147 - AluSx SINE Alu -5 307 1 186 291 38 63 chr3 14871512 14871591 -212652987 - L3b LINE CR1 -80 1503 1427 1541 153 0 62 chr3 14871637 14871944 -212652634 + AluJo SINE Alu 6 293 -19 2194 96 3 0 chr3 14872638 14872940 -212651638 - AluSg1 SINE Alu -6 303 1 2277 93 3 0 chr3 14872940 14873242 -212651336 - AluSx SINE Alu -9 303 1 313 198 40 87 chr3 14873339 14873380 -212651198 - MLT1D LTR MaLR 0 505 464 2182 93 0 23 chr3 14873380 14873690 -212650888 + AluSc SINE Alu 1 303 -6 313 198 40 87 chr3 14873690 14873774 -212650804 - MLT1D LTR MaLR -41 464 386 341 263 26 0 chr3 14873783 14873859 -212650719 - AluJ/FLAM SINE Alu -224 78 1 * 1632 250 36 50 chr3 14873859 14874320 -212650258 - MLT1E2 LTR MaLR -132 494 39 1922 127 0 7 chr3 14874320 14874611 -212649967 - AluSx SINE Alu -22 290 2 1632 250 36 50 chr3 14874611 14874638 -212649940 - MLT1E2 LTR MaLR -587 39 13 2272 102 0 0 chr3 14875016 14875320 -212649258 + AluSx SINE Alu 1 304 -8 192 270 80 90 chr3 14876317 14876417 -212648161 - L2 LINE L2 0 3272 3174 2299 57 0 20 chr3 14876512 14876813 -212647765 + AluY SINE Alu 1 295 -16 1813 110 57 11 chr3 14877005 14877286 -212647292 + AluSx SINE Alu 1 294 -18 2057 120 0 10 chr3 14877523 14877822 -212646756 + AluSq SINE Alu 1 296 -17 663 198 9 0 chr3 14877887 14878003 -212646575 + FLAM_A SINE Alu 1 117 -16 23 33 0 0 chr3 14878003 14878033 -212646545 + AT_rich Low_complexity Low_complexity 1 30 0 2216 94 0 3 chr3 14878039 14878336 -212646242 - AluSc SINE Alu -12 297 2 29 0 0 0 chr3 14878372 14878401 -212646177 + AT_rich Low_complexity Low_complexity 1 29 0 1206 156 13 36 chr3 14878421 14878646 -212645932 + AluJo SINE Alu 75 294 -18 892 29 0 0 chr3 14878885 14878990 -212645588 + AluSc SINE Alu 1 105 -204 1122 111 81 77 chr3 14879130 14879365 -212645213 + MER46A DNA MER2_type 1 236 0 1775 149 3 7 chr3 14879393 14879681 -212644897 + AluJo SINE Alu 1 287 -25 708 172 52 0 chr3 14879693 14879827 -212644751 + FLAM_C SINE Alu 2 142 -1 1822 143 0 31 chr3 14880024 14880344 -212644234 + AluSx SINE Alu 1 311 0 1497 136 0 0 chr3 14880424 14880652 -212643926 - AluSg/x SINE Alu 0 310 83 969 115 0 0 chr3 14880685 14880815 -212643763 - FLAM_C SINE Alu -2 131 2 533 87 0 33 chr3 14880844 14880936 -212643642 + FLAM_C SINE Alu 55 143 0 405 307 129 6 chr3 14880986 14881149 -212643429 - MIR3 SINE MIR 0 208 26 22 0 0 0 chr3 14881405 14881427 -212643151 + AT_rich Low_complexity Low_complexity 1 22 0 1426 191 7 7 chr3 14881432 14881715 -212642863 + AluJo SINE Alu 6 288 -24 239 269 104 0 chr3 14881832 14881899 -212642679 - L2 LINE L2 -50 3222 3149 278 192 112 36 chr3 14882147 14882269 -212642309 + L1ME1 LINE L1 5226 5365 -814 1918 125 54 0 chr3 14882269 14882564 -212642014 + AluSx SINE Alu 1 311 -1 278 192 112 36 chr3 14882564 14882580 -212641998 + L1ME1 LINE L1 5365 5378 -801 539 194 0 0 chr3 14882594 14882692 -212641886 + U13 snRNA snRNA 5 102 -2 1892 142 55 2 chr3 14882713 14883165 -212641413 + L1MA9 LINE L1 5193 5780 -532 2144 92 3 0 chr3 14883166 14883449 -212641129 + AluSp SINE Alu 2 285 -28 851 190 25 25 chr3 14883465 14883665 -212640913 + L1MA9 LINE L1 5935 6134 -178 988 196 56 82 chr3 14883665 14883759 -212640819 - AluJb SINE Alu -14 298 203 3440 109 77 38 chr3 14883759 14884317 -212640261 + LTR19B LTR ERV1 1 580 0 1567 101 0 0 chr3 14884317 14884526 -212640052 - AluSq SINE Alu -104 209 1 988 196 56 82 chr3 14884526 14884736 -212639842 - AluJb SINE Alu -107 205 1 358 148 0 0 chr3 14884753 14884807 -212639771 + L1ME1 LINE L1 5365 5418 -748 6193 133 291 14 chr3 14884808 14886136 -212638442 - pTR5 LTR ERV1 0 2438 743 2179 189 85 62 chr3 14886136 14886222 -212638356 + L1ME1 LINE L1 5413 5496 -670 2335 70 7 0 chr3 14886222 14886523 -212638055 + AluY SINE Alu 1 303 -8 2179 189 85 62 chr3 14886523 14887049 -212637529 + L1ME1 LINE L1 5496 6039 -127 635 76 0 0 chr3 14887062 14887141 -212637437 - AluSg/x SINE Alu -14 296 218 2120 94 0 13 chr3 14887318 14887617 -212636961 - AluY SINE Alu -16 295 1 1915 135 13 7 chr3 14887735 14888039 -212636539 - AluJb SINE Alu -6 306 1 2054 112 7 3 chr3 14888275 14888579 -212635999 - AluSx SINE Alu -7 305 1 1856 137 4 0 chr3 14888855 14889133 -212635445 - AluJb SINE Alu -15 297 19 195 279 0 0 chr3 14889206 14889249 -212635329 + MIR SINE MIR 193 235 -27 1878 132 7 3 chr3 14889282 14889571 -212635007 + AluSx SINE Alu 1 290 -22 367 325 69 65 chr3 14889665 14889752 -212634826 + L2 LINE L2 3066 3151 -162 2265 91 3 0 chr3 14889752 14890050 -212634528 - AluSg SINE Alu -11 299 1 367 325 69 65 chr3 14890050 14890208 -212634370 + L2 LINE L2 3151 3312 -1 546 115 73 10 chr3 14890357 14890453 -212634125 + U13 snRNA snRNA 3 104 0 1915 122 0 7 chr3 14890481 14890777 -212633801 + AluJb SINE Alu 3 296 -16 206 263 53 0 chr3 14891467 14891543 -212633035 - MIR SINE MIR -119 143 64 2455 52 0 0 chr3 14891544 14891849 -212632729 - AluSg SINE Alu -5 305 1 258 330 21 0 chr3 14891996 14892093 -212632485 - L2 LINE L2 -89 3183 3085 1865 103 10 55 chr3 14892323 14892634 -212631944 - AluSx SINE Alu -15 297 1 1826 116 0 4 chr3 14892667 14892935 -212631643 - AluSc SINE Alu -25 284 18 327 377 84 0 chr3 14892959 14893126 -212631452 - L2 LINE L2 -566 2748 2568 1376 154 17 80 chr3 14893392 14893691 -212630887 + AluJo SINE Alu 3 282 -30 917 154 12 117 chr3 14893702 14893942 -212630636 - AluJo SINE Alu -12 300 86 835 9 0 38 chr3 14893961 14894066 -212630512 - L1PA5 LINE L1 0 6154 6054 449 62 10 82 chr3 14894104 14894162 -212630416 + L1MB3 LINE L1 6094 6144 -39 1673 123 0 12 chr3 14894162 14894415 -212630163 + AluSx SINE Alu 49 298 -14 449 62 10 82 chr3 14894415 14894453 -212630125 + L1MB3 LINE L1 6144 6183 0 2384 80 0 3 chr3 14894629 14894941 -212629637 + AluY SINE Alu 1 311 0 358 58 115 0 chr3 14894945 14894997 -212629581 - L1ME3 LINE L1 -12 6150 6093 260 211 202 0 chr3 14895135 14895239 -212629339 + MIR SINE MIR 16 140 -68 2360 70 0 3 chr3 14895379 14895679 -212628899 - AluY SINE Alu -12 299 1 1989 108 3 7 chr3 14896219 14896515 -212628063 - AluSc SINE Alu -14 295 1 2144 115 7 0 chr3 14896565 14896870 -212627708 - AluSx SINE Alu -5 307 1 1309 192 21 31 chr3 14897031 14897318 -212627260 + AluJo SINE Alu 17 300 -12 2614 23 3 0 chr3 14897515 14897817 -212626761 - AluYa5 SINE Alu -8 303 1 231 36 0 0 chr3 14897975 14898003 -212626575 + (CA)n Simple_repeat Simple_repeat 1 28 0 26 74 0 0 chr3 14898043 14898097 -212626481 + AT_rich Low_complexity Low_complexity 1 54 0 406 233 86 55 chr3 14898099 14898282 -212626296 + L1ME1 LINE L1 5905 6164 -2 1657 128 34 60 chr3 14898319 14898617 -212625961 + AluSx SINE Alu 1 290 -22 2188 113 0 0 chr3 14898635 14898937 -212625641 + AluSq SINE Alu 1 302 -11 5850 32 17 10 chr3 14899452 14900161 -212624417 + SVA Other Other 673 1386 0 5699 82 25 22 chr3 14900174 14900777 -212623801 + L1MA3 LINE L1 5461 6068 -237 1985 134 0 0 chr3 14900777 14901075 -212623503 - AluSx SINE Alu -14 298 1 5699 82 25 22 chr3 14901075 14901286 -212623292 + L1MA3 LINE L1 6068 6277 -28 2074 114 0 3 chr3 14901296 14901595 -212622983 - AluSx SINE Alu -14 298 1 574 252 8 8 chr3 14902822 14902949 -212621629 - MIR SINE MIR -108 154 28 2271 101 0 0 chr3 14902953 14903259 -212621319 - AluSg SINE Alu -4 306 1 180 0 0 0 chr3 14903932 14903952 -212620626 + (CTA)n Simple_repeat Simple_repeat 1 20 0 2183 89 3 10 chr3 14904186 14904499 -212620079 - AluY SINE Alu 0 311 1 2334 76 0 3 chr3 14904744 14905046 -212619532 - AluYa5 SINE Alu -10 301 1 943 155 0 42 chr3 14905563 14905731 -212618847 - FRAM SINE Alu -17 159 1 189 74 0 0 chr3 14905731 14905758 -212618820 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 1525 125 4 93 chr3 14905759 14906038 -212618540 - AluSx SINE Alu -30 282 29 1193 178 4 21 chr3 14906038 14906274 -212618304 + AluJo SINE Alu 77 308 -4 1908 128 10 3 chr3 14906291 14906580 -212617998 + AluSx SINE Alu 2 292 -20 819 131 0 51 chr3 14906618 14906755 -212617823 + FLAM_C SINE Alu 2 131 -2 1307 184 4 16 chr3 14906765 14907015 -212617563 + AluJo SINE Alu 3 249 -63 2323 53 0 0 chr3 14907364 14907669 -212616909 - AluY SINE Alu 0 305 1 1705 109 87 11 chr3 14907697 14907972 -212616606 + AluSx SINE Alu 1 296 -16 1858 154 0 10 chr3 14907980 14908278 -212616300 + AluSx SINE Alu 7 301 -11 1982 83 3 73 chr3 14908327 14908640 -212615938 - AluSg SINE Alu -19 291 1 2222 110 0 0 chr3 14908919 14909227 -212615351 - AluSc SINE Alu 0 309 2 1273 160 5 0 chr3 14909262 14909462 -212615116 - AluJb SINE Alu -25 287 87 1791 175 0 0 chr3 14909504 14909796 -212614782 + AluJo SINE Alu 1 292 -20 864 276 163 64 chr3 14911018 14911903 -212612675 + L2 LINE L2 2233 3232 -40 1831 163 0 0 chr3 14911960 14912255 -212612323 + AluJb SINE Alu 1 295 -17 261 174 0 0 chr3 14912255 14912301 -212612277 - MLT2D LTR ERVL -365 49 4 1481 216 24 0 chr3 14912325 14912621 -212611957 + L1ME LINE L1 5374 5676 -488 2392 70 0 0 chr3 14912622 14912923 -212611655 + AluY SINE Alu 1 301 -10 469 245 29 103 chr3 14913130 14913253 -212611325 - MER5A DNA MER1_type 0 189 85 2102 94 7 0 chr3 14913253 14913540 -212611038 - AluSx SINE Alu -17 295 7 469 245 29 103 chr3 14913540 14913620 -212610958 - MER5A DNA MER1_type -104 85 1 1231 169 19 100 chr3 14913687 14914007 -212610571 - AluJo SINE Alu -18 294 1 1773 130 40 10 chr3 14914530 14914829 -212609749 + AluSx SINE Alu 1 308 -4 28 29 0 0 chr3 14914882 14914917 -212609661 + AT_rich Low_complexity Low_complexity 1 35 0 180 0 0 0 chr3 14915100 14915120 -212609458 + (T)n Simple_repeat Simple_repeat 1 20 0 849 197 26 21 chr3 14915592 14915785 -212608793 + AluSx SINE Alu 2 195 -117 2101 112 0 0 chr3 14915938 14916225 -212608353 - AluSg SINE Alu -23 287 1 1707 149 10 36 chr3 14916225 14916533 -212608045 - AluJb SINE Alu -12 300 1 210 234 0 0 chr3 14916608 14916655 -212607923 + L2 LINE L2 3267 3313 0 204 375 68 17 chr3 14916758 14916934 -212607644 - L2 LINE L2 -558 2756 2572 2265 97 0 0 chr3 14917314 14917623 -212606955 - AluSc SINE Alu 0 309 1 1545 165 49 0 chr3 14918425 14918710 -212605868 - AluSx SINE Alu -13 299 1 22 0 0 0 chr3 14919214 14919236 -212605342 + AT_rich Low_complexity Low_complexity 1 22 0 2223 98 0 3 chr3 14919583 14919879 -212604699 - AluSg SINE Alu -15 295 1 2075 102 10 7 chr3 14920933 14921228 -212603350 + AluSx SINE Alu 1 296 -16 206 263 53 0 chr3 14921587 14921663 -212602915 - MIR SINE MIR -119 143 64 2455 52 0 0 chr3 14921664 14921969 -212602609 - AluSg SINE Alu -5 305 1 258 330 21 0 chr3 14922116 14922213 -212602365 - L2 LINE L2 -89 3183 3085 1865 103 10 55 chr3 14922443 14922754 -212601824 - AluSx SINE Alu -15 297 1 1826 116 0 4 chr3 14922787 14923055 -212601523 - AluSc SINE Alu -25 284 18 327 377 84 0 chr3 14923079 14923246 -212601332 - L2 LINE L2 -566 2748 2568 1376 154 17 80 chr3 14923512 14923811 -212600767 + AluJo SINE Alu 3 282 -30 917 154 12 117 chr3 14923822 14924062 -212600516 - AluJo SINE Alu -12 300 86 835 9 0 38 chr3 14924081 14924186 -212600392 - L1PA5 LINE L1 0 6154 6054 449 62 10 82 chr3 14924224 14924282 -212600296 + L1MB3 LINE L1 6094 6144 -39 1673 123 0 12 chr3 14924282 14924535 -212600043 + AluSx SINE Alu 49 298 -14 449 62 10 82 chr3 14924535 14924573 -212600005 + L1MB3 LINE L1 6144 6183 0 2384 80 0 3 chr3 14924749 14925061 -212599517 + AluY SINE Alu 1 311 0 358 58 115 0 chr3 14925065 14925117 -212599461 - L1ME2 LINE L1 -14 6150 6093 260 211 202 0 chr3 14925255 14925359 -212599219 + MIR SINE MIR 16 140 -68 2360 70 0 3 chr3 14925499 14925799 -212598779 - AluY SINE Alu -12 299 1 1989 108 3 7 chr3 14926340 14926636 -212597942 - AluSc SINE Alu -14 295 1 2144 115 7 0 chr3 14926686 14926991 -212597587 - AluSx SINE Alu -5 307 1 1463 170 17 35 chr3 14927152 14927441 -212597137 + AluJo SINE Alu 17 300 -12 2741 3 0 0 chr3 14927638 14927941 -212596637 - AluYa5 SINE Alu -8 303 1 555 215 233 34 chr3 14927965 14928010 -212596568 - MLT1H LTR MaLR -8 541 506 1892 110 34 14 chr3 14928010 14928301 -212596277 - AluSx SINE Alu -15 297 1 555 215 233 34 chr3 14928301 14928429 -212596149 - MLT1H LTR MaLR -43 506 405 1865 157 3 3 chr3 14928429 14928741 -212595837 - AluJo SINE Alu 0 312 1 555 215 233 34 chr3 14928741 14928960 -212595618 - MLT1H LTR MaLR -144 405 20 192 314 157 33 chr3 14929702 14929823 -212594755 + L2 LINE L2 3136 3271 -1 189 0 0 0 chr3 14930217 14930238 -212594340 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1762 114 52 7 chr3 14930241 14930512 -212594066 - AluSq SINE Alu -30 283 1 517 259 113 8 chr3 14930769 14931008 -212593570 - L1ME4a LINE L1 -38 6083 5820 1595 180 20 7 chr3 14931121 14931416 -212593162 + AluJo SINE Alu 6 304 -8 2216 97 0 7 chr3 14931419 14931718 -212592860 + AluSx SINE Alu 1 297 -15 330 62 0 0 chr3 14931824 14931872 -212592706 - Alu SINE Alu 0 301 254 * 370 147 39 25 chr3 14931867 14931996 -212592582 - MER21A LTR ERV1 -499 364 214 899 141 7 0 chr3 14932004 14932146 -212592432 + AluJo SINE Alu 20 162 -150 346 113 65 0 chr3 14932146 14932208 -212592370 - MER21A LTR ERV1 -863 68 3 262 184 23 46 chr3 14932208 14932295 -212592283 - Tigger4(Zombi) DNA MER2_type -141 2590 2506 198 283 0 17 chr3 14932424 14932484 -212592094 + L2 LINE L2 3189 3247 -25 1471 128 9 133 chr3 14932500 14932845 -212591733 + AluJo SINE Alu 1 302 -10 207 0 0 0 chr3 14933177 14933200 -212591378 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 808 165 0 0 chr3 14933200 14933321 -212591257 - AluJb SINE Alu -190 122 2 2114 96 0 17 chr3 14933537 14933829 -212590749 - AluSx SINE Alu -16 296 10 22 0 0 0 chr3 14934608 14934630 -212589948 + AT_rich Low_complexity Low_complexity 1 22 0 1595 180 20 7 chr3 14935124 14935419 -212589159 + AluJo SINE Alu 6 304 -8 2168 88 0 38 chr3 14935422 14935740 -212588838 + AluSq SINE Alu 1 306 -7 384 313 27 34 chr3 14935782 14935929 -212588649 + MIR SINE MIR 98 243 -19 311 183 158 58 chr3 14936666 14936786 -212587792 + MIR SINE MIR 75 206 -56 21 0 0 0 chr3 14936787 14936808 -212587770 + AT_rich Low_complexity Low_complexity 1 21 0 310 327 175 6 chr3 14936809 14937124 -212587454 + L2 LINE L2 1630 1997 -1317 2748 13 0 3 chr3 14937125 14937437 -212587141 - AluYa5 SINE Alu 0 311 1 1900 100 14 10 chr3 14937443 14937732 -212586846 - AluY SINE Alu -20 291 2 873 110 0 22 chr3 14937732 14937868 -212586710 - AluSq/x SINE Alu -178 135 3 794 176 7 0 chr3 14937874 14938010 -212586568 - FRAM SINE Alu -8 168 32 1362 159 83 25 chr3 14938297 14938574 -212586004 - AluJo SINE Alu -19 293 1 2225 88 0 3 chr3 14938715 14939010 -212585568 - AluSc SINE Alu -15 294 1 1656 156 0 20 chr3 14939602 14939897 -212584681 + AluJb SINE Alu 23 311 -1 23 0 0 0 chr3 14940044 14940067 -212584511 + AT_rich Low_complexity Low_complexity 1 23 0 229 313 12 0 chr3 14940254 14940337 -212584241 - L1MC/D LINE L1 -1911 5897 5814 1913 174 26 5 chr3 14940343 14940722 -212583856 - L1MB4 LINE L1 -1 6179 5793 2116 53 3 73 chr3 14940948 14941274 -212583304 - AluY SINE Alu 0 305 1 2038 143 3 3 chr3 14992041 14992335 -212532243 - AluSx SINE Alu -18 294 1 492 102 136 34 chr3 14992391 14992512 -212532066 + AluY SINE Alu 184 313 0 1163 118 98 10 chr3 14992512 14992715 -212531863 - Tigger2 DNA MER2_type -231 2487 2267 262 190 0 127 chr3 14992699 14992722 -212531856 - Tigger2 DNA MER2_type -379 55 31 * 2013 150 3 3 chr3 14992722 14993015 -212531563 + AluSx SINE Alu 1 293 -19 262 190 0 127 chr3 14993015 14993070 -212531508 - Tigger2 DNA MER2_type -403 31 1 2200 103 14 0 chr3 14993239 14993531 -212531047 - AluSx SINE Alu -11 301 6 2038 141 7 10 chr3 14993813 14994119 -212530459 + AluSx SINE Alu 1 305 -7 1649 155 34 26 chr3 14994284 14994549 -212530029 - AluJo SINE Alu -45 267 1 245 197 115 0 chr3 14995107 14995168 -212529410 + L2 LINE L2 2792 2859 -455 193 290 129 32 chr3 14995269 14995393 -212529185 - L2 LINE L2 -554 2760 2625 2510 71 0 7 chr3 14996273 14996581 -212527997 - AluSx SINE Alu -6 306 1 1800 114 28 48 chr3 14996581 14996870 -212527708 - AluJb SINE Alu -29 283 1 180 111 0 0 chr3 14996952 14996979 -212527599 + (TCCC)n Simple_repeat Simple_repeat 1 27 0 2288 112 0 3 chr3 14996979 14997283 -212527295 - AluSq SINE Alu -10 303 1 2052 119 18 3 chr3 14997440 14997726 -212526852 - AluSx SINE Alu -22 290 1 1977 144 13 7 chr3 14997766 14998065 -212526513 + AluJb SINE Alu 1 301 -11 2360 70 0 20 chr3 14998395 14998695 -212525883 - AluSp SINE Alu -19 294 1 2199 103 0 41 chr3 14998872 14999191 -212525387 + AluSq SINE Alu 1 306 -7 382 313 27 34 chr3 14999233 14999380 -212525198 + MIR SINE MIR 98 243 -19 2454 64 3 19 chr3 14999663 14999974 -212524604 - AluSp SINE Alu -7 306 1 2282 127 0 3 chr3 15000097 15000405 -212524173 - AluSx SINE Alu -5 307 1 1858 131 38 14 chr3 15000673 15000963 -212523615 + AluSx SINE Alu 1 297 -15 2890 3 0 0 chr3 15001032 15001336 -212523242 + AluYa5 SINE Alu 1 304 -7 1733 169 0 24 chr3 15001525 15001821 -212522757 - AluJo SINE Alu -7 305 17 1004 109 132 23 chr3 15001966 15001982 -212522596 + AluSq SINE Alu 120 133 -180 2367 81 0 13 chr3 15001982 15002291 -212522287 + AluY SINE Alu 1 305 -6 1004 109 132 23 chr3 15002291 15002448 -212522130 + AluSq SINE Alu 133 312 -1 988 84 0 0 chr3 15002649 15002768 -212521810 - AluY SINE Alu -192 119 1 532 87 0 33 chr3 15002796 15002888 -212521690 + FLAM_A SINE Alu 54 142 0 24 0 0 0 chr3 15002968 15002992 -212521586 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 15003359 15003380 -212521198 + AT_rich Low_complexity Low_complexity 1 21 0 294 170 0 0 chr3 15003804 15003857 -212520721 + Alu SINE Alu 241 293 -7 2204 123 0 23 chr3 15003857 15004166 -212520412 + AluSx SINE Alu 1 302 -10 25 0 0 0 chr3 15004212 15004237 -212520341 + AT_rich Low_complexity Low_complexity 1 25 0 254 0 0 77 chr3 15004504 15004543 -212520035 + (C)n Simple_repeat Simple_repeat 1 36 0 29 28 0 0 chr3 15005278 15005314 -212519264 + AT_rich Low_complexity Low_complexity 1 36 0 184 148 0 0 chr3 15005662 15005689 -212518889 + MIR3 SINE MIR 155 181 -27 970 142 58 0 chr3 15005725 15005880 -212518698 + AluSg/x SINE Alu 137 300 -12 1949 144 0 63 chr3 15006091 15006424 -212518154 + AluJb SINE Alu 1 312 0 763 132 0 0 chr3 15006579 15006685 -212517893 - AluSq/x SINE Alu -206 107 2 1987 126 7 0 chr3 15006719 15007004 -212517574 - AluSx SINE Alu -25 287 1 951 181 0 0 chr3 15007023 15007205 -212517373 + AluSg/x SINE Alu 130 311 -1 516 283 107 0 chr3 15008110 15008269 -212516309 - AluSp SINE Alu -17 296 121 26 30 0 0 chr3 15008434 15008467 -212516111 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr3 15008975 15009011 -212515567 + AT_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr3 15009011 15009038 -212515540 + GC_rich Low_complexity Low_complexity 1 27 0 656 165 0 0 chr3 15009250 15009347 -212515231 + AluJb SINE Alu 194 290 -22 435 248 8 56 chr3 15009349 15009474 -212515104 - MIR SINE MIR -55 207 89 2531 66 0 3 chr3 15009644 15009949 -212514629 - AluY SINE Alu -7 304 1 5065 83 7 34 chr3 15010496 15011254 -212513324 - L1PA6 LINE L1 -5 6149 5413 1162 82 7 0 chr3 15011637 15011783 -212512795 + AluY SINE Alu 158 304 -7 983 77 0 0 chr3 15011784 15011901 -212512677 - AluSg SINE Alu -193 117 1 881 285 21 16 chr3 15011950 15012192 -212512386 - MIR SINE MIR -4 258 16 22 0 0 0 chr3 15012762 15012784 -212511794 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 15013099 15013127 -212511451 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 15013332 15013356 -212511222 + GC_rich Low_complexity Low_complexity 1 24 0 180 0 0 0 chr3 15013590 15013610 -212510968 + (T)n Simple_repeat Simple_repeat 1 20 0 1277 196 21 14 chr3 15014218 15014503 -212510075 + AluJb SINE Alu 11 297 -15 2397 80 0 10 chr3 15014665 15014965 -212509613 + AluY SINE Alu 1 297 -14 1357 110 55 0 chr3 15015066 15015284 -212509294 - MER30 DNA MER1_type 0 230 1 200 243 122 27 chr3 15015366 15015440 -212509138 + MIR SINE MIR 64 144 -64 537 257 29 14 chr3 15015481 15015621 -212508957 - MIR SINE MIR -75 187 46 714 44 0 0 chr3 15015633 15015724 -212508854 - AluY SINE Alu -11 300 210 2150 99 0 4 chr3 15015724 15015997 -212508581 - AluSc SINE Alu -36 273 2 29 0 0 0 chr3 15016033 15016062 -212508516 + AT_rich Low_complexity Low_complexity 1 29 0 1279 150 13 44 chr3 15016082 15016309 -212508269 + AluJo SINE Alu 75 294 -18 946 29 0 0 chr3 15016549 15016654 -212507924 + AluSc SINE Alu 1 105 -204 1049 115 81 77 chr3 15016794 15017029 -212507549 + MER46A DNA MER2_type 1 236 0 1926 149 3 7 chr3 15017057 15017345 -212507233 + AluJo SINE Alu 1 287 -25 676 172 52 0 chr3 15017357 15017491 -212507087 + FLAM_C SINE Alu 2 142 -1 1968 143 0 31 chr3 15017688 15018008 -212506570 + AluSx SINE Alu 1 311 0 1618 136 0 0 chr3 15018088 15018316 -212506262 - AluSg/x SINE Alu 0 310 83 928 115 0 0 chr3 15018349 15018479 -212506099 - FLAM_C SINE Alu -2 131 2 496 98 0 33 chr3 15018508 15018600 -212505978 + FLAM_C SINE Alu 55 143 0 362 324 83 0 chr3 15018652 15018797 -212505781 - MIR3 SINE MIR 0 208 52 22 0 0 0 chr3 15019071 15019093 -212505485 + AT_rich Low_complexity Low_complexity 1 22 0 1570 203 7 7 chr3 15019098 15019399 -212505179 + AluJo SINE Alu 6 306 -6 211 313 104 0 chr3 15019498 15019565 -212505013 - L2 LINE L2 -50 3222 3149 253 182 100 55 chr3 15019843 15019935 -212504643 + L1ME1 LINE L1 5264 5363 -981 2047 129 54 0 chr3 15019935 15020229 -212504349 + AluSx SINE Alu 1 310 -2 253 182 100 55 chr3 15020229 15020246 -212504332 + L1ME1 LINE L1 5363 5378 -966 514 194 0 0 chr3 15020260 15020358 -212504220 + U13 snRNA snRNA 5 102 -2 1806 142 55 2 chr3 15020379 15020831 -212503747 + L1MA9 LINE L1 5193 5780 -532 2259 92 7 0 chr3 15020832 15021114 -212503464 + AluSq SINE Alu 2 285 -28 814 190 25 25 chr3 15021130 15021330 -212503248 + L1MA9 LINE L1 5935 6134 -178 1132 196 56 82 chr3 15021330 15021424 -212503154 - AluJb SINE Alu -14 298 203 3255 109 77 38 chr3 15021424 15021982 -212502596 + LTR19B LTR ERV1 1 580 0 1681 101 0 0 chr3 15021982 15022191 -212502387 - AluSq SINE Alu -104 209 1 1132 196 56 82 chr3 15022191 15022401 -212502177 - AluJb SINE Alu -107 205 1 344 148 0 0 chr3 15022418 15022472 -212502106 + L1ME1 LINE L1 5365 5418 -748 5884 136 291 14 chr3 15022473 15023801 -212500777 - pTR5 LTR ERV1 0 2438 743 2058 189 85 62 chr3 15023801 15023887 -212500691 + L1ME1 LINE L1 5413 5496 -670 2496 70 7 0 chr3 15023887 15024188 -212500390 + AluY SINE Alu 1 303 -8 2058 189 85 62 chr3 15024188 15024714 -212499864 + L1ME1 LINE L1 5496 6039 -127 605 76 0 0 chr3 15024727 15024806 -212499772 - AluSg/x SINE Alu -14 296 218 2276 99 0 13 chr3 15024978 15025282 -212499296 - AluY SINE Alu -11 300 1 2074 135 13 7 chr3 15025400 15025704 -212498874 - AluJb SINE Alu -6 306 1 2212 114 7 3 chr3 15025937 15026244 -212498334 - AluSx SINE Alu -4 308 1 2012 136 4 0 chr3 15026520 15026799 -212497779 - AluJb SINE Alu -14 298 19 189 279 0 0 chr3 15026872 15026915 -212497663 + MIR SINE MIR 193 235 -27 2062 132 7 0 chr3 15026948 15027236 -212497342 + AluSx SINE Alu 1 290 -22 325 350 53 49 chr3 15027331 15027418 -212497160 + L2 LINE L2 3066 3151 -162 2391 92 3 0 chr3 15027418 15027713 -212496865 - AluSg SINE Alu -14 296 1 325 350 53 49 chr3 15027713 15027871 -212496707 + L2 LINE L2 3151 3312 -1 518 146 62 0 chr3 15028020 15028116 -212496462 + U13 snRNA snRNA 3 104 0 2086 121 0 7 chr3 15028144 15028442 -212496136 + AluJb SINE Alu 3 298 -14 205 263 53 0 chr3 15029133 15029209 -212495369 - MIR SINE MIR -119 143 64 2431 50 0 0 chr3 15029214 15029518 -212495060 - AluSg SINE Alu 0 304 1 252 330 21 0 chr3 15029665 15029762 -212494816 - L2 LINE L2 -89 3183 3085 1974 109 10 55 chr3 15029992 15030303 -212494275 - AluSx SINE Alu -15 297 1 1977 112 0 4 chr3 15030336 15030604 -212493974 - AluSc SINE Alu -25 284 18 311 377 84 0 chr3 15030628 15030795 -212493783 - L2 LINE L2 -566 2748 2568 1513 153 17 83 chr3 15031061 15031361 -212493217 + AluJo SINE Alu 3 282 -30 1026 158 12 114 chr3 15031367 15031613 -212492965 - AluJo SINE Alu -6 306 86 775 19 0 29 chr3 15031633 15031737 -212492841 - L1PA5 LINE L1 0 6154 6054 413 62 10 82 chr3 15031775 15031833 -212492745 + L1MB3 LINE L1 6094 6144 -39 1807 123 0 12 chr3 15031833 15032086 -212492492 + AluSx SINE Alu 49 298 -14 413 62 10 82 chr3 15032086 15032124 -212492454 + L1MB3 LINE L1 6144 6183 0 2591 70 0 3 chr3 15032300 15032612 -212491966 + AluY SINE Alu 1 311 0 336 58 115 0 chr3 15032617 15032669 -212491909 - L1ME2 LINE L1 -14 6150 6093 265 234 168 0 chr3 15032807 15032914 -212491664 + MIR SINE MIR 16 140 -68 2478 70 3 3 chr3 15033054 15033353 -212491225 - AluY SINE Alu -12 299 1 2113 105 7 7 chr3 15033893 15034188 -212490390 - AluSc SINE Alu -14 295 1 28 0 0 0 chr3 15034238 15034266 -212490312 + AT_rich Low_complexity Low_complexity 1 28 0 242 278 0 42 chr3 15034412 15034484 -212490094 - AluS SINE Alu -235 73 5 1234 229 7 10 chr3 15034679 15034980 -212489598 + AluY SINE Alu 10 309 -2 216 0 0 0 chr3 15035126 15035150 -212489428 + (T)n Simple_repeat Simple_repeat 1 24 0 1684 146 9 110 chr3 15035360 15035528 -212489050 - AluJo SINE Alu -11 301 118 222 37 0 0 chr3 15035528 15035555 -212489023 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2338 82 0 0 chr3 15035555 15035837 -212488741 - AluY SINE Alu -29 282 1 1684 146 9 110 chr3 15035837 15035868 -212488710 - AluJo SINE Alu -193 119 86 2517 61 3 0 chr3 15035868 15036161 -212488417 - AluY SINE Alu -17 294 1 1684 146 9 110 chr3 15036161 15036294 -212488284 - AluJo SINE Alu -226 86 1 499 230 138 0 chr3 15036320 15036472 -212488106 + MER96 DNA MER1_type 1 173 -2 388 282 0 10 chr3 15036477 15036580 -212487998 - L2 LINE L2 -32 3281 3180 2375 104 10 0 chr3 15037236 15037545 -212487033 + AluSx SINE Alu 1 312 0 23 33 0 0 chr3 15037664 15037694 -212486884 + AT_rich Low_complexity Low_complexity 1 30 0 1711 154 70 0 chr3 15037872 15038144 -212486434 - AluJo SINE Alu -21 291 1 228 303 50 69 chr3 15038235 15038325 -212486253 - L1MC/D LINE L1 -1986 5822 5732 2152 138 0 13 chr3 15038325 15038499 -212486079 - AluSx SINE Alu -5 307 137 2187 132 0 0 chr3 15038499 15038794 -212485784 - AluSx SINE Alu -17 295 1 2152 138 0 13 chr3 15038794 15038930 -212485648 - AluSx SINE Alu -175 137 1 228 303 50 69 chr3 15038930 15039100 -212485478 - L1MC/D LINE L1 -2076 5732 5567 315 289 240 10 chr3 15039307 15039615 -212484963 - L2 LINE L2 -9 3304 2926 2013 146 69 50 chr3 15040329 15040388 -212484190 + MER65A LTR ERV1 1 57 -388 2024 106 46 7 chr3 15040388 15040671 -212483907 + AluSx SINE Alu 1 294 -18 2013 146 69 50 chr3 15040671 15041015 -212483563 + MER65A LTR ERV1 57 412 -33 2442 99 0 3 chr3 15041016 15041329 -212483249 - AluSx SINE Alu 0 312 1 2575 56 3 0 chr3 15041335 15041641 -212482937 - AluY SINE Alu -4 307 1 1081 70 8 0 chr3 15041641 15041770 -212482808 - AluSq/x SINE Alu -182 130 1 25 0 0 0 chr3 15041771 15041796 -212482782 + AT_rich Low_complexity Low_complexity 1 25 0 2059 150 0 3 chr3 15041832 15042132 -212482446 - AluSx SINE Alu -13 299 1 2197 74 3 14 chr3 15042496 15042807 -212481771 + AluY SINE Alu 1 308 0 1179 287 76 12 chr3 15042977 15043409 -212481169 - MLT1J LTR MaLR -50 461 2 2527 36 19 26 chr3 15043784 15044091 -212480487 - AluY SINE Alu -6 305 1 895 168 38 32 chr3 15044148 15044333 -212480245 + MER5A DNA MER1_type 4 189 0 2503 75 3 3 chr3 15044336 15044643 -212479935 + AluSp SINE Alu 1 307 -6 2243 112 3 6 chr3 15044653 15044965 -212479613 + AluSx SINE Alu 1 311 -1 961 122 0 98 chr3 15044965 15045153 -212479425 + AluSg/x SINE Alu 132 303 0 1008 175 0 63 chr3 15045835 15046041 -212478537 - AluJo SINE Alu 0 312 120 843 168 60 12 chr3 15046041 15046208 -212478370 - MER46A DNA MER2_type -61 175 1 474 223 76 38 chr3 15046639 15046796 -212477782 - MER103 DNA DNA -3 163 1 2046 117 7 48 chr3 15047399 15047571 -212477007 - AluSx SINE Alu -16 296 118 246 32 0 0 chr3 15047571 15047602 -212476976 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2407 70 3 0 chr3 15047602 15047886 -212476692 - AluSp SINE Alu -28 285 1 2046 117 7 48 chr3 15047886 15048021 -212476557 - AluSx SINE Alu -192 120 1 514 303 112 45 chr3 15048023 15048379 -212476199 - L2 LINE L2 -12 3301 2922 184 289 0 0 chr3 15048994 15049039 -212475539 + MIR SINE MIR 23 67 -141 488 224 35 9 chr3 15049084 15049200 -212475378 - MIR SINE MIR -106 156 38 1242 140 0 0 chr3 15049329 15049507 -212475071 - AluSg/x SINE Alu 0 310 133 362 241 12 18 chr3 15049800 15049911 -212474667 - MLT1I LTR MaLR 0 409 318 2518 51 0 3 chr3 15050073 15050368 -212474210 + AluY SINE Alu 1 294 -17 535 243 43 37 chr3 15050507 15050793 -212473785 + L2 LINE L2 2783 3063 -250 189 0 0 0 chr3 15050939 15050960 -212473618 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 400 48 32 0 chr3 15051084 15051147 -212473431 + (TG)n Simple_repeat Simple_repeat 1 65 0 1901 98 0 0 chr3 15051736 15051972 -212472606 + AluSx SINE Alu 40 275 -37 1874 150 0 62 chr3 15052382 15052702 -212471876 + AluJb SINE Alu 1 300 -12 185 386 51 0 chr3 15053151 15053309 -212471269 - MIR SINE MIR -53 209 44 1856 146 28 0 chr3 15054336 15054624 -212469954 + AluJo SINE Alu 1 296 -16 200 231 0 39 chr3 15054653 15054705 -212469873 - MIR SINE MIR -100 162 113 2323 115 0 0 chr3 15055172 15055476 -212469102 - AluSx SINE Alu -8 304 1 2403 103 0 22 chr3 15056157 15056476 -212468102 + AluSx SINE Alu 1 312 0 2581 64 0 0 chr3 15056632 15056928 -212467650 + AluY SINE Alu 1 296 -15 2369 67 0 0 chr3 15056979 15057291 -212467287 + AluY SINE Alu 1 312 0 323 295 65 9 chr3 15057539 15057697 -212466881 + MIR SINE MIR 34 202 -60 180 363 26 9 chr3 15058078 15058191 -212466387 - L2 LINE L2 -527 2787 2673 317 172 184 11 chr3 15058416 15058503 -212466075 + MIR SINE MIR 84 185 -77 308 285 28 56 chr3 15058798 15058942 -212465636 - MIR3 SINE MIR -61 147 8 2491 89 0 0 chr3 15058946 15059249 -212465329 - AluSx SINE Alu -9 303 1 386 225 70 54 chr3 15059254 15059383 -212465195 - MIR SINE MIR -65 143 12 340 288 144 44 chr3 15059624 15059678 -212464900 + L1ME4a LINE L1 5675 5722 -399 1865 158 10 13 chr3 15059678 15059976 -212464602 + AluJo SINE Alu 1 297 -15 340 288 144 44 chr3 15059976 15060150 -212464428 + L1ME4a LINE L1 5722 5926 -195 673 217 25 31 chr3 15060174 15060335 -212464243 - MIR SINE MIR -17 245 86 255 221 0 65 chr3 15060533 15060610 -212463968 - MIR SINE MIR -139 123 52 358 238 24 0 chr3 15060989 15061073 -212463505 + MIR SINE MIR 98 183 -79 2353 105 0 0 chr3 15061403 15061709 -212462869 + AluY SINE Alu 1 306 -5 2013 142 13 3 chr3 15061742 15062045 -212462533 - AluJo SINE Alu 0 312 7 2004 139 14 17 chr3 15062063 15062358 -212462220 - AluJb SINE Alu -18 294 1 2316 76 31 3 chr3 15062693 15062983 -212461595 - AluSc SINE Alu -11 298 1 222 349 112 18 chr3 15063192 15063361 -212461217 - MIR SINE MIR -27 235 51 2002 106 0 22 chr3 15063571 15063846 -212460732 + AluSx SINE Alu 44 312 0 364 226 69 0 chr3 15064073 15064175 -212460403 - L1MC5 LINE L1 -35 7926 7818 254 295 32 0 chr3 15064846 15064941 -212459637 - MER113 DNA MER1_type? -415 106 9 402 206 14 78 chr3 15065061 15065202 -212459376 - LTR16B LTR ERVL -4 460 329 231 323 31 23 chr3 15065327 15065457 -212459121 - LTR16B LTR ERVL -331 133 3 2348 105 0 0 chr3 15065615 15065911 -212458667 - AluSx SINE Alu -10 302 7 1587 101 18 0 chr3 15065924 15066141 -212458437 - AluSg/x SINE Alu -19 293 73 210 37 0 0 chr3 15066141 15066168 -212458410 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 672 238 21 0 chr3 15066168 15066311 -212458267 - FRAM SINE Alu -19 147 2 2333 112 3 0 chr3 15066771 15067075 -212457503 + AluSx SINE Alu 1 305 -7 512 225 7 80 chr3 15067245 15067372 -212457206 + MIR SINE MIR 89 205 -57 1601 157 25 46 chr3 15067372 15067542 -212457036 - AluJo SINE Alu -22 290 127 2593 70 0 0 chr3 15067542 15067844 -212456734 + AluY SINE Alu 1 302 -9 1601 157 25 46 chr3 15067844 15067953 -212456625 - AluJo SINE Alu -185 127 17 512 225 7 80 chr3 15067953 15067976 -212456602 + MIR SINE MIR 205 228 -34 297 328 81 15 chr3 15068334 15068532 -212456046 + MIR SINE MIR 40 250 -12 2361 98 0 9 chr3 15068966 15069281 -212455297 - AluSx SINE Alu 0 312 1 182 33 67 0 chr3 15069282 15069312 -212455266 + T-rich Low_complexity Low_complexity 2 33 0 863 167 0 0 chr3 15069315 15069447 -212455131 + AluJb SINE Alu 157 288 -24 652 226 27 21 chr3 15069449 15069635 -212454943 + ORSL DNA AcHobo 89 275 0 833 250 48 0 chr3 15069667 15069875 -212454703 + AluJo SINE Alu 3 220 -92 235 175 0 0 chr3 15069875 15069915 -212454663 + Alu SINE Alu 86 125 -177 2181 111 13 13 chr3 15069916 15070223 -212454355 - AluSx SINE Alu -5 307 1 1905 124 59 0 chr3 15070229 15070502 -212454076 - AluSx SINE Alu -23 289 1 1159 213 8 12 chr3 15071008 15071252 -212453326 - MIR SINE MIR 0 262 20 2306 122 0 0 chr3 15071351 15071663 -212452915 - AluSx SINE Alu 0 312 1 1491 165 36 56 chr3 15071663 15071965 -212452613 - AluJo SINE Alu -15 297 1 23 0 0 0 chr3 15071975 15071998 -212452580 + AT_rich Low_complexity Low_complexity 1 23 0 711 164 16 23 chr3 15072101 15072229 -212452349 + FLAM_C SINE Alu 3 129 -14 2001 147 10 0 chr3 15072247 15072539 -212452039 + AluJb SINE Alu 1 295 -17 2269 113 0 23 chr3 15072539 15072849 -212451729 + AluSx SINE Alu 1 303 -9 25 83 0 0 chr3 15072849 15072909 -212451669 + AT_rich Low_complexity Low_complexity 1 60 0 730 186 0 0 chr3 15072995 15073119 -212451459 - FLAM_C SINE Alu -18 125 2 312 70 0 0 chr3 15073186 15073229 -212451349 + (CA)n Simple_repeat Simple_repeat 2 44 0 262 289 57 63 chr3 15073330 15073489 -212451089 - L2 LINE L2 -41 3231 3074 360 264 28 9 chr3 15074012 15074118 -212450460 + MIR SINE MIR 20 127 -135 557 115 0 0 chr3 15074646 15074724 -212449854 + U6 snRNA snRNA 1 78 -29 354 318 59 6 chr3 15074806 15074976 -212449602 + L1M4 LINE L1 4055 4233 -1913 411 385 50 5 chr3 15075276 15075497 -212449081 - MIR SINE MIR -14 248 18 2437 107 0 0 chr3 15075576 15075886 -212448692 + AluSx SINE Alu 1 310 -2 665 328 26 9 chr3 15076112 15076344 -212448234 - MIR SINE MIR -1 261 26 1855 171 26 0 chr3 15076351 15076655 -212447923 + AluJo SINE Alu 1 312 0 2438 90 0 0 chr3 15076742 15077052 -212447526 - AluY SINE Alu -1 310 1 2282 98 10 0 chr3 15077877 15078174 -212446404 - AluSq SINE Alu -13 300 1 1177 45 0 0 chr3 15078545 15078677 -212445901 + AluY SINE Alu 1 132 -179 2604 66 0 0 chr3 15078683 15078988 -212445590 - AluY SINE Alu -6 305 1 1578 147 105 11 chr3 15078996 15079262 -212445316 - AluJb SINE Alu -21 291 1 1912 102 98 0 chr3 15079359 15079623 -212444955 - AluSx SINE Alu -22 290 1 617 261 101 20 chr3 15080382 15080581 -212443997 + MER58C DNA MER1_type 1 215 0 223 316 10 41 chr3 15080650 15080748 -212443830 + (TCCA)n Simple_repeat Simple_repeat 1 95 0 252 219 78 0 chr3 15080812 15080876 -212443702 - L2 LINE L2 -51 3221 3153 443 174 81 128 chr3 15080973 15081122 -212443456 + MER103 DNA DNA 24 165 -1 2327 117 0 0 chr3 15081490 15081797 -212442781 + AluSx SINE Alu 1 307 -5 275 239 43 11 chr3 15081819 15081911 -212442667 + MIR SINE MIR 60 154 -108 1161 108 0 0 chr3 15082123 15082152 -212442426 + (CCCA)n Simple_repeat Simple_repeat 1 205 0 1161 108 0 0 chr3 15082152 15082328 -212442250 + (CCCA)n Simple_repeat Simple_repeat 3 178 0 448 222 95 16 chr3 15082959 15083085 -212441493 - MIR SINE MIR -116 146 11 2422 85 0 3 chr3 15083359 15083665 -212440913 - AluY SINE Alu -6 305 1 222 305 12 0 chr3 15083705 15083787 -212440791 + (TA)n Simple_repeat Simple_repeat 2 84 0 2080 105 3 86 chr3 15084303 15084628 -212439950 + AluSx SINE Alu 1 298 -14 2285 110 0 7 chr3 15084828 15085127 -212439451 + AluSx SINE Alu 1 297 -15 239 313 114 30 chr3 15085139 15085305 -212439273 - MIR SINE MIR -35 227 48 2463 56 0 3 chr3 15085329 15085615 -212438963 - AluY SINE Alu -5 306 22 316 264 46 47 chr3 15085665 15085798 -212438780 - MIR SINE MIR -68 140 41 27 0 0 0 chr3 15085893 15085920 -212438658 + AT_rich Low_complexity Low_complexity 1 27 0 262 353 85 0 chr3 15086441 15086594 -212437984 + L1ME LINE L1 5534 5699 -422 2279 92 0 26 chr3 15086604 15086908 -212437670 - AluSx SINE Alu -16 296 1 848 206 0 0 chr3 15086940 15087081 -212437497 - FRAM SINE Alu -35 141 1 1796 188 101 3 chr3 15087085 15087463 -212437115 - L1ME1 LINE L1 -62 6104 5690 2201 108 10 10 chr3 15087486 15087792 -212436786 + AluSx SINE Alu 1 306 -6 306 250 32 90 chr3 15087904 15087972 -212436606 + MIR SINE MIR 114 184 -78 811 165 0 88 chr3 15087972 15088154 -212436424 - FRAM SINE Alu 0 166 1 306 250 32 90 chr3 15088154 15088241 -212436337 + MIR SINE MIR 184 260 -2 1037 191 23 56 chr3 15088250 15088409 -212436169 - AluJo SINE Alu -21 291 139 2116 131 3 13 chr3 15088409 15088723 -212435855 - AluSx SINE Alu -1 311 1 1037 191 23 56 chr3 15088723 15088778 -212435800 - AluJo SINE Alu -173 139 84 22 35 0 0 chr3 15088811 15088840 -212435738 + AT_rich Low_complexity Low_complexity 1 29 0 2033 151 0 3 chr3 15088962 15089260 -212435318 - AluSx SINE Alu -15 297 1 708 179 8 0 chr3 15089357 15089480 -212435098 - FLAM_C SINE Alu -17 126 3 2561 50 0 3 chr3 15089512 15089811 -212434767 + AluY SINE Alu 1 298 -13 1567 207 4 0 chr3 15090447 15090703 -212433875 + AluJb SINE Alu 1 257 -55 2123 134 0 6 chr3 15090704 15091017 -212433561 - AluSx SINE Alu -1 311 1 24 85 0 0 chr3 15091094 15091153 -212433425 + AT_rich Low_complexity Low_complexity 1 59 0 281 335 26 79 chr3 15091433 15091519 -212433059 - MIR SINE MIR -16 246 170 2014 117 10 45 chr3 15091519 15091827 -212432751 - AluSx SINE Alu -15 297 1 281 335 26 79 chr3 15091827 15091892 -212432686 - MIR SINE MIR -92 170 103 974 142 58 0 chr3 15092972 15093127 -212431451 - AluSg/x SINE Alu -12 298 135 250 274 77 51 chr3 15093365 15093482 -212431096 - MIR3 SINE MIR -25 183 64 487 316 84 15 chr3 15093802 15094007 -212430571 - L2 LINE L2 -341 2973 2745 2352 117 7 0 chr3 15094007 15094315 -212430263 - AluSx SINE Alu -2 310 1 487 316 84 15 chr3 15094315 15094372 -212430206 - L2 LINE L2 -569 2745 2693 1451 239 55 18 chr3 15094441 15094839 -212429739 - MLT1J LTR MaLR 0 511 99 224 326 45 11 chr3 15094870 15094959 -212429619 - L2 LINE L2 -224 3048 2957 281 333 0 60 chr3 15095009 15095159 -212429419 + MIR3 SINE MIR 1 141 -67 2541 71 3 0 chr3 15095193 15095501 -212429077 + AluY SINE Alu 1 309 -2 398 52 0 17 chr3 15095581 15095639 -212428939 + (TG)n Simple_repeat Simple_repeat 1 57 0 198 143 0 0 chr3 15095765 15095800 -212428778 + (CA)n Simple_repeat Simple_repeat 2 36 0 434 251 131 73 chr3 15095963 15096222 -212428356 - MLT1K LTR MaLR -162 426 153 272 313 102 50 chr3 15096751 15097098 -212427480 + L2 LINE L2 2344 2714 -600 2323 78 0 56 chr3 15097098 15097419 -212427159 + AluSx SINE Alu 1 303 -9 272 313 102 50 chr3 15097419 15097455 -212427123 + L2 LINE L2 2714 2747 -567 2326 110 0 3 chr3 15097536 15097837 -212426741 + AluSx SINE Alu 1 300 -12 1425 142 0 9 chr3 15097847 15098059 -212426519 + AluSg SINE Alu 1 210 -100 376 125 0 0 chr3 15098059 15098115 -212426463 + AluSq/x SINE Alu 78 133 -169 2270 104 7 7 chr3 15098129 15098437 -212426141 + AluSq SINE Alu 1 308 -5 225 0 0 0 chr3 15098502 15098527 -212426051 + (T)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chr3 15098671 15098701 -212425877 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr3 15098701 15098729 -212425849 + GC_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 15098929 15098952 -212425626 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 15099107 15099130 -212425448 + GC_rich Low_complexity Low_complexity 1 23 0 2386 83 0 7 chr3 15099782 15100082 -212424496 - AluY SINE Alu -13 298 1 813 155 0 16 chr3 15100084 15100213 -212424365 - AluJo/FLAM SINE Alu -180 132 6 2261 109 13 10 chr3 15100263 15100574 -212424004 + AluSx SINE Alu 1 312 0 999 167 29 17 chr3 15100584 15100758 -212423820 - AluJb SINE Alu -18 294 119 2280 102 0 0 chr3 15100865 15101174 -212423404 + AluSx SINE Alu 1 309 0 230 265 41 61 chr3 15101695 15101793 -212422785 + MIR3 SINE MIR 110 205 -3 2066 142 0 10 chr3 15101840 15102150 -212422428 - AluSx SINE Alu -5 307 1 306 216 142 68 chr3 15102232 15102394 -212422184 - L1ME4a LINE L1 -2 6119 5946 799 263 31 24 chr3 15102407 15102662 -212421916 + MIR SINE MIR 2 258 -4 496 75 0 0 chr3 15102712 15102779 -212421799 + Alu SINE Alu 2 68 -241 * 542 189 0 0 chr3 15102776 15102866 -212421712 - AluJ/FLAM SINE Alu -221 91 2 320 276 131 14 chr3 15103081 15103226 -212421352 - MIR SINE MIR -55 207 46 442 225 0 42 chr3 15103766 15103886 -212420692 - L2 LINE L2 -19 3294 3180 1679 211 113 43 chr3 15104031 15104462 -212420116 + MLT1D LTR MaLR 1 469 -36 4068 150 75 92 chr3 15104462 15105551 -212419027 + MER11C LTR ERVK 1 1071 0 1679 211 113 43 chr3 15105551 15105589 -212418989 + MLT1D LTR MaLR 469 503 -2 420 209 176 0 chr3 15105593 15105741 -212418837 - L2 LINE L2 -313 3000 2827 1249 146 77 16 chr3 15105827 15105971 -212418607 + L1MB8 LINE L1 5347 5514 -664 2407 106 3 0 chr3 15105971 15106282 -212418296 + AluSx SINE Alu 1 312 0 1249 146 77 16 chr3 15106282 15106383 -212418195 + L1MB8 LINE L1 5514 5607 -571 1418 195 33 0 chr3 15106384 15106625 -212417953 + AluJb SINE Alu 1 249 -63 1968 190 105 9 chr3 15106625 15106766 -212417812 + L1MB8 LINE L1 5679 5805 -373 2447 83 0 3 chr3 15106766 15107066 -212417512 + AluY SINE Alu 1 299 -12 1968 190 105 9 chr3 15107066 15107372 -212417206 + L1MB8 LINE L1 5805 6169 -9 2218 113 10 0 chr3 15107539 15107840 -212416738 + AluSx SINE Alu 3 306 -6 456 167 76 53 chr3 15107884 15108016 -212416562 - MIR SINE MIR -51 211 77 575 114 0 0 chr3 15108369 15108448 -212416130 + AluSq SINE Alu 2 80 -232 2594 49 7 3 chr3 15108452 15108757 -212415821 + AluY SINE Alu 1 306 -5 1670 81 5 5 chr3 15108758 15108968 -212415610 + AluSq SINE Alu 76 285 -28 203 0 37 0 chr3 15109019 15109046 -212415532 + (CA)n Simple_repeat Simple_repeat 2 29 0 418 274 12 118 chr3 15109812 15109900 -212414678 - L2 LINE L2 -2 3311 3215 2388 92 3 0 chr3 15109900 15110203 -212414375 + AluSg SINE Alu 1 304 -6 418 274 12 118 chr3 15110203 15110435 -212414143 - L2 LINE L2 -98 3215 3025 392 233 158 14 chr3 15110430 15110576 -212414002 - L2 LINE L2 -16 3297 3131 * 1269 147 35 56 chr3 15110579 15110619 -212413959 + AluJo SINE Alu 87 126 -186 2456 67 0 20 chr3 15110619 15110917 -212413661 - AluSg SINE Alu -18 292 1 1269 147 35 56 chr3 15110917 15111107 -212413471 + AluJo SINE Alu 126 312 0 1875 141 39 0 chr3 15111247 15111530 -212413048 + AluJo SINE Alu 1 294 -18 278 132 19 0 chr3 15111562 15111615 -212412963 + (TA)n Simple_repeat Simple_repeat 1 54 0 752 215 101 0 chr3 15111616 15111774 -212412804 - MIR SINE MIR -3 259 86 286 294 125 22 chr3 15111863 15111999 -212412579 - MIR SINE MIR -52 210 61 449 300 22 77 chr3 15112026 15112299 -212412279 + MIR SINE MIR 5 262 0 187 303 139 55 chr3 15112298 15112463 -212412115 + MIR SINE MIR 12 190 -72 * 447 226 182 17 chr3 15113118 15113241 -212411337 - MIR SINE MIR -50 212 111 2399 171 88 11 chr3 15113241 15113685 -212410893 + MER66A LTR ERV1 1 478 0 447 226 182 17 chr3 15113685 15113742 -212410836 - MIR SINE MIR -151 111 2 799 232 6 17 chr3 15113913 15114090 -212410488 - MER5B DNA MER1_type 0 178 4 2260 125 0 6 chr3 15114114 15114426 -212410152 + AluSx SINE Alu 1 310 -2 2423 94 3 0 chr3 15114491 15114798 -212409780 - AluSp SINE Alu -5 308 1 2361 91 0 3 chr3 15114972 15115268 -212409310 - AluSc SINE Alu -14 295 1 22 35 0 0 chr3 15115309 15115338 -212409240 + AT_rich Low_complexity Low_complexity 1 29 0 405 251 131 0 chr3 15115397 15115588 -212408990 - L1ME LINE L1 -303 5818 5603 700 146 42 69 chr3 15115601 15115721 -212408857 + FLAM_C SINE Alu 2 124 -83 2289 108 7 0 chr3 15115721 15116016 -212408562 + AluSp SINE Alu 1 297 -16 2561 58 0 6 chr3 15116019 15116330 -212408248 + AluY SINE Alu 1 309 -2 700 146 42 69 chr3 15116330 15116415 -212408163 + FLAM_C SINE Alu 126 207 0 775 153 0 69 chr3 15116416 15116560 -212408018 + AluJo SINE Alu 2 135 -177 2119 125 20 3 chr3 15116562 15116865 -212407713 + AluSx SINE Alu 1 308 -4 793 135 23 23 chr3 15116934 15117067 -212407511 - FLAM_C SINE Alu 0 133 1 1596 129 115 65 chr3 15117334 15117459 -212407119 + THE1C LTR MaLR 1 118 -257 2454 90 0 0 chr3 15117459 15117760 -212406818 - AluSg1 SINE Alu -8 301 1 1596 129 115 65 chr3 15117760 15117990 -212406588 + THE1C LTR MaLR 118 374 -1 884 133 21 0 chr3 15118599 15118742 -212405836 - MER46B DNA MER2_type 0 236 91 1522 178 75 42 chr3 15118742 15119102 -212405476 - MER21A LTR ERV1 0 931 560 330 58 0 39 chr3 15119096 15119148 -212405430 - AluJo SINE Alu -8 294 245 * 923 206 41 0 chr3 15119150 15119320 -212405258 - AluJo SINE Alu -135 177 1 970 137 71 18 chr3 15119320 15119561 -212405017 - MER21B LTR ERV1 -376 487 214 976 145 7 0 chr3 15119566 15119711 -212404867 + AluJo SINE Alu 17 162 -150 328 113 65 0 chr3 15119711 15119773 -212404805 - MER21A LTR ERV1 -863 68 3 736 186 170 0 chr3 15119773 15119961 -212404617 - MER46B DNA MER2_type -141 95 1 2318 102 7 0 chr3 15120153 15120446 -212404132 - AluSq SINE Alu -18 295 1 1922 116 75 17 chr3 15121001 15121158 -212403420 - AluSq SINE Alu -1 312 166 2380 82 0 7 chr3 15121158 15121464 -212403114 - AluY SINE Alu -6 305 2 1922 116 75 17 chr3 15121464 15121599 -212402979 - AluSq SINE Alu -147 166 3 2227 116 7 0 chr3 15121672 15121974 -212402604 + AluY SINE Alu 1 304 -7 2366 97 0 7 chr3 15122071 15122370 -212402208 - AluSx SINE Alu -15 297 1 1727 180 20 7 chr3 15122373 15122667 -212401911 - AluJo SINE Alu -9 303 6 481 259 113 8 chr3 15122780 15123019 -212401559 + L1ME4a LINE L1 5820 6083 -38 1951 109 50 14 chr3 15123273 15123583 -212400995 + AluSq SINE Alu 1 313 0 204 314 157 33 chr3 15123960 15124081 -212400497 - L2 LINE L2 -1 3271 3136 417 222 241 31 chr3 15124823 15125042 -212399536 + MLT1H LTR MaLR 20 192 -357 2019 157 3 3 chr3 15125042 15125354 -212399224 + AluJo SINE Alu 1 312 0 417 222 241 31 chr3 15125354 15125482 -212399096 + MLT1H LTR MaLR 192 292 -257 2007 117 34 14 chr3 15125482 15125773 -212398805 + AluSx SINE Alu 1 297 -15 417 222 241 31 chr3 15125773 15125797 -212398781 + MLT1H LTR MaLR 292 520 -29 1458 204 7 7 chr3 15125842 15126146 -212398432 + AluYa5 SINE Alu 1 304 -7 1733 169 0 24 chr3 15126335 15126631 -212397947 - AluJo SINE Alu -7 305 17 2246 121 7 0 chr3 15126792 15127097 -212397481 + AluSx SINE Alu 1 307 -5 2131 108 3 7 chr3 15127147 15127443 -212397135 + AluSc SINE Alu 1 295 -14 2244 109 0 3 chr3 15127983 15128286 -212396292 + AluY SINE Alu 1 302 -9 604 169 0 0 chr3 15128286 15128375 -212396203 - AluJo/FLAM SINE Alu -187 125 37 508 100 133 33 chr3 15128956 15129046 -212395532 - AluY SINE Alu -29 282 184 240 89 0 0 chr3 15129046 15129091 -212395487 + Alu SINE Alu 256 300 0 2132 136 0 3 chr3 15129102 15129397 -212395181 + AluSx SINE Alu 1 294 -18 1399 73 0 0 chr3 15129959 15130124 -212394454 - AluSg/x SINE Alu -14 298 134 2216 134 0 0 chr3 15130124 15130422 -212394156 - AluSx SINE Alu -14 298 1 984 159 43 19 chr3 15131039 15131247 -212393331 + L1MB7 LINE L1 5925 6137 -47 212 281 0 53 chr3 15131390 15131447 -212393131 + MIR3 SINE MIR 114 167 -41 797 186 117 0 chr3 15131664 15131809 -212392769 - AluSp SINE Alu -17 296 135 2155 79 6 103 chr3 15131810 15132150 -212392428 - AluSx SINE Alu -5 307 1 181 291 38 63 chr3 15132231 15132310 -212392268 - L3b LINE CR1 -80 1503 1427 1685 153 0 62 chr3 15132356 15132663 -212391915 + AluJo SINE Alu 6 293 -19 180 344 49 0 chr3 15132715 15132776 -212391802 - L2 LINE L2 -259 3054 2991 2340 96 3 0 chr3 15133357 15133659 -212390919 - AluSg1 SINE Alu -6 303 1 2437 92 3 0 chr3 15133659 15133962 -212390616 - AluSx SINE Alu -8 304 1 283 198 40 87 chr3 15134059 15134100 -212390478 - MLT1D LTR MaLR 0 505 464 2296 93 0 26 chr3 15134100 15134411 -212390167 + AluSc SINE Alu 1 303 -6 283 198 40 87 chr3 15134411 15134495 -212390083 - MLT1D LTR MaLR -41 464 386 345 246 0 0 chr3 15134515 15134580 -212389998 - AluJ/FLAM SINE Alu -237 65 1 * 1510 241 33 50 chr3 15134580 15135041 -212389537 - MLT1E2 LTR MaLR -133 521 39 2064 127 0 7 chr3 15135041 15135332 -212389246 - AluSx SINE Alu -22 290 2 1510 241 33 50 chr3 15135332 15135359 -212389219 - MLT1E2 LTR MaLR -615 39 13 2423 102 0 0 chr3 15135737 15136041 -212388537 + AluSx SINE Alu 1 304 -8 183 270 80 90 chr3 15137038 15137138 -212387440 - L2 LINE L2 0 3272 3174 2438 57 0 20 chr3 15137233 15137534 -212387044 + AluY SINE Alu 1 295 -16 1953 110 57 11 chr3 15137726 15138007 -212386571 + AluSx SINE Alu 1 294 -18 2205 120 0 10 chr3 15138244 15138543 -212386035 + AluSq SINE Alu 1 296 -17 675 207 9 0 chr3 15138608 15138724 -212385854 + FLAM_A SINE Alu 1 117 -16 1997 142 7 3 chr3 15138885 15139181 -212385397 + AluSx SINE Alu 1 297 -15 2208 99 10 7 chr3 15139194 15139487 -212385091 + AluSg SINE Alu 1 294 -16 2429 89 3 3 chr3 15139577 15139880 -212384698 - AluSp SINE Alu -10 303 1 1256 185 104 57 chr3 15140149 15140446 -212384132 + AluJo SINE Alu 1 311 -1 2323 91 0 0 chr3 15140446 15140777 -212383801 + AluY SINE Alu 1 331 0 893 146 0 33 chr3 15140799 15140950 -212383628 + AluSq/x SINE Alu 1 146 -167 1328 179 9 0 chr3 15140954 15141178 -212383400 + AluJb SINE Alu 85 310 -2 510 158 246 0 chr3 15141870 15141984 -212382594 - FLAM_C SINE Alu 0 143 2 2228 126 0 0 chr3 15142209 15142511 -212382067 - AluSg SINE Alu -8 302 1 219 320 70 39 chr3 15142587 15142715 -212381863 + MIR SINE MIR 91 222 -40 24 0 0 0 chr3 15142890 15142914 -212381664 + AT_rich Low_complexity Low_complexity 1 24 0 443 232 0 65 chr3 15143004 15143142 -212381436 + MIR SINE MIR 50 178 -84 2627 132 110 9 chr3 15143787 15144193 -212380385 + L1MB7 LINE L1 5390 5863 -315 4668 49 26 0 chr3 15144193 15144769 -212379809 + LTR10C LTR ERV1 1 591 0 2627 132 110 9 chr3 15144769 15144891 -212379687 + L1MB7 LINE L1 5863 5971 -207 2187 125 0 13 chr3 15144945 15145249 -212379329 - AluSg SINE Alu -7 303 4 316 93 56 0 chr3 15145256 15145310 -212379268 + L1MB7 LINE L1 6119 6175 -9 364 261 91 53 chr3 15145413 15145682 -212378896 - L1MC4a LINE L1 -549 5572 5487 2417 69 0 36 chr3 15145682 15145988 -212378590 - AluY SINE Alu -16 295 1 364 261 91 53 chr3 15145988 15146065 -212378513 - L1MC4a LINE L1 -634 5487 5414 2392 59 24 0 chr3 15146075 15146362 -212378216 - AluY SINE Alu -17 294 1 1938 139 3 7 chr3 15146454 15146757 -212377821 - AluJb SINE Alu -10 302 1 305 219 211 18 chr3 15146757 15146871 -212377707 - L1MC4a LINE L1 -813 5333 5198 1855 105 80 4 chr3 15146873 15147149 -212377429 - AluJb SINE Alu -15 297 1 264 204 19 0 chr3 15147244 15147304 -212377274 + MIR SINE MIR 93 153 -58 22 0 0 0 chr3 15147925 15147947 -212376631 + GC_rich Low_complexity Low_complexity 1 22 0 718 225 23 6 chr3 15148986 15149159 -212375419 - MER5B DNA MER1_type -2 176 1 204 40 0 0 chr3 15149343 15149368 -212375210 + (T)n Simple_repeat Simple_repeat 1 25 0 405 250 56 0 chr3 15149487 15149595 -212374983 - L2 LINE L2 -9 3304 3191 2025 153 0 0 chr3 15150566 15150860 -212373718 - AluSx SINE Alu -18 294 1 1355 155 88 60 chr3 15150884 15151041 -212373537 - AluJo SINE Alu -15 297 127 2496 80 0 0 chr3 15151041 15151343 -212373235 + AluY SINE Alu 1 302 -9 1355 155 88 60 chr3 15151343 15151469 -212373109 - AluJo SINE Alu -185 127 6 1885 124 10 42 chr3 15151868 15152030 -212372548 - AluJo SINE Alu -15 297 148 2496 70 0 3 chr3 15152030 15152331 -212372247 - AluY SINE Alu -11 300 1 1885 124 10 42 chr3 15152331 15152475 -212372103 - AluJo SINE Alu -164 148 1 379 327 0 10 chr3 15152992 15153096 -212371482 - MIR SINE MIR -140 122 20 247 243 214 64 chr3 15153461 15153601 -212370977 - L2 LINE L2 -219 3053 2893 261 286 114 28 chr3 15153657 15153912 -212370666 - L2 LINE L2 -457 2857 2581 219 36 0 0 chr3 15154181 15154209 -212370369 + (CCCCCT)n Simple_repeat Simple_repeat 4 31 0 1727 134 15 22 chr3 15154219 15154488 -212370090 - AluJb SINE Alu -45 267 1 263 219 0 2 chr3 15154547 15154596 -212369982 + MIR SINE MIR 43 90 -118 2019 140 7 3 chr3 15154833 15155125 -212369453 + AluSx SINE Alu 1 293 -19 461 248 26 128 chr3 15155172 15155341 -212369237 + L2 LINE L2 3074 3208 -105 1760 169 0 39 chr3 15155341 15155649 -212368929 - AluJb SINE Alu -16 296 1 461 248 26 128 chr3 15155649 15155745 -212368833 + L2 LINE L2 3208 3312 -1 347 291 64 7 chr3 15155754 15155895 -212368683 + Charlie8 DNA MER1_type 117 265 -2152 1819 125 68 29 chr3 15156186 15156466 -212368112 + AluSx SINE Alu 1 291 -21 225 0 0 0 chr3 15156467 15156492 -212368086 + (TA)n Simple_repeat Simple_repeat 2 26 0 249 146 0 0 chr3 15156507 15156527 -212368051 + (A)n Simple_repeat Simple_repeat 1 20 -35 1909 100 12 0 chr3 15156527 15156777 -212367801 + AluSx SINE Alu 1 253 -59 249 146 0 0 chr3 15156777 15156811 -212367767 + (A)n Simple_repeat Simple_repeat 19 55 0 2420 51 54 0 chr3 15157022 15157317 -212367261 - AluY SINE Alu 0 311 1 1232 123 0 0 chr3 15157450 15157632 -212366946 - AluSg/x SINE Alu 0 299 118 2085 126 10 3 chr3 15157632 15157941 -212366637 - AluSq SINE Alu -2 311 1 1898 164 0 7 chr3 15158041 15158339 -212366239 - AluJb SINE Alu -12 300 5 776 168 8 0 chr3 15158340 15158465 -212366113 - AluJo/FLAM SINE Alu -184 128 3 283 228 22 22 chr3 15158883 15158975 -212365603 + MIR3 SINE MIR 90 181 -27 524 292 65 34 chr3 15160065 15160447 -212364131 - MLT1J LTR MaLR -7 504 73 2362 104 3 0 chr3 15160531 15160838 -212363740 - AluSg SINE Alu -2 308 1 3408 243 125 45 chr3 15160865 15161698 -212362880 - HAL1 LINE L1 -96 2411 1646 2229 114 3 7 chr3 15161698 15161996 -212362582 - AluSx SINE Alu -15 297 1 3408 243 125 45 chr3 15161996 15162052 -212362526 - HAL1 LINE L1 -861 1646 1596 2346 114 0 0 chr3 15162052 15162360 -212362218 - AluSg SINE Alu -2 308 1 3408 243 125 45 chr3 15162360 15163291 -212361287 - HAL1 LINE L1 -911 1596 444 489 255 105 79 chr3 15163294 15163675 -212360903 - HAL1 LINE L1 -2109 398 8 404 298 156 25 chr3 15163681 15163836 -212360742 - HAL1 LINE L1 -1193 1314 1181 2175 123 10 0 chr3 15163836 15164137 -212360441 - AluSx SINE Alu -8 304 1 404 298 156 25 chr3 15164137 15164219 -212360359 - HAL1 LINE L1 -1326 1181 1046 2312 127 0 0 chr3 15164232 15164539 -212360039 - AluSx SINE Alu -5 307 1 21 0 0 0 chr3 15164544 15164565 -212360013 + AT_rich Low_complexity Low_complexity 1 21 0 2243 79 3 76 chr3 15164565 15164893 -212359685 + AluY SINE Alu 1 304 -7 306 170 0 0 chr3 15164896 15164943 -212359635 - AluJ/FRAM SINE Alu -35 267 221 662 263 94 69 chr3 15164961 15165395 -212359183 - HAL1 LINE L1 -2029 478 34 463 246 87 43 chr3 15165605 15165743 -212358835 + MIR SINE MIR 1 144 -118 512 241 80 0 chr3 15165805 15165917 -212358661 - MER58A DNA MER1_type 0 161 41 279 203 51 0 chr3 15165922 15165981 -212358597 - HAL1 LINE L1 -2438 69 8 200 241 86 0 chr3 15166017 15166075 -212358503 + MIR SINE MIR 189 251 -11 1975 138 37 3 chr3 15166119 15166417 -212358161 - AluSx SINE Alu -4 308 1 236 234 144 54 chr3 15166625 15166792 -212357786 - L1MC5 LINE L1 -329 7632 7451 318 206 11 43 chr3 15167219 15167311 -212357267 - L1MC5 LINE L1 -36 7925 7837 456 259 40 46 chr3 15167752 15167926 -212356652 + MER5A DNA MER1_type 16 188 -1 559 213 16 16 chr3 15167936 15168058 -212356520 - L2 LINE L2 -4 3309 3188 1166 235 66 54 chr3 15168108 15168606 -212355972 - MLT1H1 LTR MaLR -42 513 10 1884 159 28 0 chr3 15168619 15168902 -212355676 + AluJo SINE Alu 1 291 -21 2091 113 34 7 chr3 15170503 15170796 -212353782 - AluSx SINE Alu -11 301 1 1997 125 0 59 chr3 15170901 15171222 -212353356 - AluSx SINE Alu -10 302 1 1102 156 24 0 chr3 15171299 15171466 -212353112 - AluJb SINE Alu -10 302 132 1330 173 9 101 chr3 15171477 15171795 -212352783 - AluSx SINE Alu -23 289 1 1058 85 0 0 chr3 15171812 15171941 -212352637 + AluSq/x SINE Alu 14 142 -170 1933 129 28 14 chr3 15171944 15172231 -212352347 + AluJb SINE Alu 1 291 -21 839 124 7 51 chr3 15172664 15172801 -212351777 + FLAM_C SINE Alu 1 131 -2 22 35 0 0 chr3 15173151 15173180 -212351398 + AT_rich Low_complexity Low_complexity 1 29 0 262 240 83 0 chr3 15173617 15173713 -212350865 - L1ME LINE L1 -257 5864 5761 2091 108 42 0 chr3 15174174 15174462 -212350116 - AluSx SINE Alu -10 302 3 2002 124 11 3 chr3 15174651 15174963 -212349615 + AluSx SINE Alu 1 314 0 223 226 161 0 chr3 15174989 15175051 -212349527 - L2 LINE L2 0 3313 3242 354 279 215 23 chr3 15175205 15175424 -212349154 + MIR SINE MIR 2 262 0 2348 104 0 0 chr3 15175772 15176070 -212348508 - AluSg SINE Alu -12 298 1 2557 74 0 0 chr3 15180502 15180811 -212343767 - AluY SINE Alu -2 309 1 2117 125 0 0 chr3 15180883 15181164 -212343414 + AluSx SINE Alu 1 281 -31 189 121 0 0 chr3 15181284 15181317 -212343261 + (T)n Simple_repeat Simple_repeat 1 33 0 339 220 189 38 chr3 15181584 15181875 -212342703 - Tigger8 DNA MER2_type -145 521 187 1672 160 0 25 chr3 15181936 15182218 -212342360 - AluSx SINE Alu 0 312 38 360 266 168 53 chr3 15182715 15182924 -212341654 + MIR SINE MIR 1 232 -30 316 297 157 22 chr3 15182960 15183143 -212341435 - MIR SINE MIR -17 245 45 187 208 0 62 chr3 15183176 15183224 -212341354 + L2 LINE L2 3263 3307 -6 284 239 261 0 chr3 15183669 15183761 -212340817 - MER5A DNA MER1_type -35 154 39 212 197 0 33 chr3 15184617 15184678 -212339900 + CT-rich Low_complexity Low_complexity 2 60 0 27 62 0 0 chr3 15184832 15184880 -212339698 + AT_rich Low_complexity Low_complexity 1 48 0 231 279 153 9 chr3 15185169 15185280 -212339298 + MIR SINE MIR 20 146 -62 196 200 0 0 chr3 15185595 15185630 -212338948 - MIR SINE MIR -114 148 114 185 277 210 34 chr3 15185598 15185717 -212338861 - MIR3 SINE MIR -62 146 7 * 321 247 26 0 chr3 15186919 15186996 -212337582 - MIR SINE MIR -79 183 105 243 0 0 0 chr3 15187085 15187112 -212337466 + (T)n Simple_repeat Simple_repeat 1 27 0 240 200 150 0 chr3 15187316 15187396 -212337182 + MIR3 SINE MIR 110 201 -7 368 248 96 41 chr3 15187997 15188163 -212336415 + MIR SINE MIR 14 183 -61 261 203 40 54 chr3 15189139 15189213 -212335365 - MIR SINE MIR -77 131 59 189 250 197 76 chr3 15190172 15190304 -212334274 + MIR3 SINE MIR 35 182 -26 472 289 67 26 chr3 15191273 15191467 -212333111 - MIR3 SINE MIR -2 206 5 684 157 170 7 chr3 15192803 15192956 -212331622 - Tigger1 DNA MER2_type 0 2418 2241 1824 144 7 4 chr3 15192960 15193231 -212331347 - AluJb SINE Alu -23 289 18 522 153 59 0 chr3 15193232 15193317 -212331261 - MER33 DNA MER1_type -208 116 27 300 277 62 54 chr3 15193810 15193940 -212330638 - MER5A DNA MER1_type -22 167 37 399 241 98 0 chr3 15194043 15194176 -212330402 - L1MD3 LINE L1 -86 7909 7764 * 968 290 84 7 chr3 15194154 15194571 -212330007 - L1MEc LINE L1 -4189 2207 1759 704 192 0 0 chr3 15194571 15194696 -212329882 - AluJb SINE Alu -9 303 179 2397 116 0 0 chr3 15194765 15195075 -212329503 - AluSx SINE Alu -2 310 1 909 150 0 21 chr3 15195095 15195235 -212329343 - AluJo SINE Alu -175 137 1 496 213 92 67 chr3 15195238 15195477 -212329101 - L1MEc LINE L1 -4640 1756 1512 2273 96 31 0 chr3 15195485 15195777 -212328801 - AluSg SINE Alu -9 301 1 627 268 174 41 chr3 15195825 15196014 -212328564 - L1MEc LINE L1 -5842 554 391 2416 94 0 0 chr3 15196014 15196321 -212328257 - AluSx SINE Alu -5 307 1 627 268 174 41 chr3 15196321 15196523 -212328055 - L1MEc LINE L1 -6005 391 111 198 0 0 0 chr3 15196560 15196582 -212327996 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 7789 22 9 11 chr3 15196583 15197777 -212326801 - L1PA3 LINE L1 0 6155 4963 630 151 126 17 chr3 15197779 15197898 -212326680 - FLAM_C SINE Alu -1 132 1 1801 146 21 7 chr3 15197905 15198185 -212326393 - AluSx SINE Alu -18 294 11 180 294 189 7 chr3 15199430 15199573 -212325005 + MIR SINE MIR 90 258 -4 647 176 146 24 chr3 15200834 15200999 -212323579 + MER5A DNA MER1_type 5 189 0 1980 82 56 43 chr3 15201129 15201434 -212323144 + AluSx SINE Alu 1 309 -3 236 280 0 0 chr3 15201760 15201810 -212322768 + MIR SINE MIR 47 96 -112 1750 170 45 28 chr3 15201881 15202280 -212322298 + L1MB2 LINE L1 5667 6072 -99 505 233 60 0 chr3 15202585 15202718 -212321860 - L1MB2 LINE L1 -3 6168 6028 351 228 114 42 chr3 15202917 15203084 -212321494 + MIR SINE MIR 49 227 -35 244 202 18 83 chr3 15205179 15205288 -212319290 - L1ME3A LINE L1 -109 6061 5960 898 240 106 37 chr3 15205446 15205770 -212318808 - L1MC5 LINE L1 -534 7427 7068 2199 130 51 23 chr3 15205770 15206124 -212318454 + THE1B LTR MaLR 1 364 0 898 240 106 37 chr3 15206124 15206203 -212318375 - L1MC5 LINE L1 -893 7068 6996 861 139 19 51 chr3 15206224 15206382 -212318196 - AluJo/FRAM SINE Alu -16 296 144 2181 106 0 20 chr3 15206383 15206571 -212318007 - AluSx SINE Alu -17 295 114 2115 124 59 31 chr3 15206571 15206925 -212317653 - THE1B LTR MaLR 0 364 1 2181 106 0 20 chr3 15206925 15207037 -212317541 - AluSx SINE Alu -198 114 1 271 287 78 0 chr3 15207098 15207227 -212317351 - HAL1b LINE L1 -684 664 526 418 238 66 33 chr3 15207233 15207255 -212317323 - L1MA10 LINE L1 -1 6333 6312 1189 243 82 50 chr3 15207255 15207964 -212316614 - HAL1b LINE L1 -14 6152 282 851 122 30 15 chr3 15207965 15208096 -212316482 - FLAM_C SINE Alu 0 133 1 2349 96 7 0 chr3 15208100 15208401 -212316177 - AluSx SINE Alu -9 303 1 2697 154 50 21 chr3 15209317 15209373 -212315205 + L1MB7 LINE L1 5386 5439 -745 2306 115 0 10 chr3 15209373 15209685 -212314893 + AluSx SINE Alu 1 309 -3 2697 154 50 21 chr3 15209685 15210153 -212314425 + L1MB7 LINE L1 5439 5925 -259 3136 183 41 17 chr3 15210161 15210799 -212313779 + MER6 DNA MER2_type 30 682 -183 240 306 71 0 chr3 15212047 15212145 -212312433 - MIR SINE MIR -63 145 41 209 280 199 15 chr3 15212505 15212642 -212311936 + MIR SINE MIR 3 173 -89 1727 184 97 35 chr3 15213167 15213287 -212311291 - Charlie4a DNA MER1_type -1457 504 393 920 178 6 6 chr3 15213287 15213444 -212311134 - FRAM SINE Alu -9 157 1 1727 184 97 35 chr3 15213444 15213779 -212310799 - Charlie4a DNA MER1_type -1568 393 21 319 289 194 55 chr3 15214100 15214301 -212310277 - MIR SINE MIR -17 245 17 180 0 0 0 chr3 15214636 15214656 -212309922 + (TGGG)n Simple_repeat Simple_repeat 1 20 0 214 316 25 0 chr3 15215711 15215790 -212308788 + MIR SINE MIR 58 138 -70 451 276 31 31 chr3 15215790 15215899 -212308679 + MIR SINE MIR 100 211 -51 2255 78 3 0 chr3 15215899 15216192 -212308386 + AluSp SINE Alu 16 309 -4 451 276 31 31 chr3 15216192 15216245 -212308333 + MIR SINE MIR 210 262 0 207 261 43 65 chr3 15216252 15216344 -212308234 - MIR SINE MIR -70 192 103 434 325 175 38 chr3 15217355 15217697 -212306881 - L2 LINE L2 0 3272 2884 358 276 48 35 chr3 15218046 15218191 -212306387 + L2 LINE L2 3167 3313 0 308 241 19 37 chr3 15218602 15218710 -212305868 - MIR SINE MIR -71 137 32 302 215 13 0 chr3 15218926 15219005 -212305573 + GA-rich Low_complexity Low_complexity 1 80 0 671 137 30 18 chr3 15219021 15219189 -212305389 + GA-rich Low_complexity Low_complexity 5 174 0 417 213 82 41 chr3 15219747 15219869 -212304709 + MIR SINE MIR 50 176 -86 2064 82 24 10 chr3 15220563 15220854 -212303724 + AluSx SINE Alu 1 295 -17 527 0 16 0 chr3 15220854 15220917 -212303661 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 2185 114 0 0 chr3 15221761 15222069 -212302509 - AluSx SINE Alu -4 308 1 289 261 81 36 chr3 15222099 15222210 -212302368 + MIR3 SINE MIR 46 161 -47 443 333 68 5 chr3 15222358 15222550 -212302028 + MIR SINE MIR 5 208 -54 198 135 19 39 chr3 15223059 15223111 -212301467 + MIR SINE MIR 81 131 -77 269 342 68 27 chr3 15224406 15224669 -212299909 + L1M4 LINE L1 4641 4914 -1232 186 43 0 0 chr3 15225420 15225443 -212299135 + (TG)n Simple_repeat Simple_repeat 1 23 0 267 146 0 0 chr3 15227261 15227316 -212297262 + (TA)n Simple_repeat Simple_repeat 2 56 0 201 227 30 45 chr3 15229343 15229409 -212295169 + MIR3 SINE MIR 107 171 -37 * 297 253 24 48 chr3 15229407 15229533 -212295045 + MIR3 SINE MIR 11 131 -91 390 258 89 8 chr3 15235844 15235968 -212288610 + MIR SINE MIR 48 181 -81 478 31 0 0 chr3 15237688 15237753 -212286825 - AluSp/q SINE Alu -6 307 243 345 280 61 30 chr3 15237787 15237919 -212286659 + MIR SINE MIR 10 145 -117 183 189 0 0 chr3 15238754 15238791 -212285787 - MIR3 SINE MIR -22 186 150 841 271 74 13 chr3 15238952 15239251 -212285327 - MER113 DNA MER1_type? -197 324 8 2087 103 7 0 chr3 15240467 15240772 -212283806 - AluSx SINE Alu 0 307 1 252 266 0 0 chr3 15241159 15241238 -212283340 + MIR SINE MIR 68 146 -62 440 218 12 11 chr3 15241297 15241432 -212283146 + MIR SINE MIR 37 149 -59 445 248 6 64 chr3 15241681 15241838 -212282740 + MIR3 SINE MIR 16 163 -45 245 338 55 7 chr3 15242625 15242770 -212281808 - L1ME4a LINE L1 -9 6112 5961 345 195 18 0 chr3 15243856 15243939 -212280639 + MIR SINE MIR 100 183 -62 289 181 66 0 chr3 15244273 15244355 -212280223 + MIR SINE MIR 36 131 -77 1599 153 0 28 chr3 15246937 15247219 -212277359 + AluSx SINE Alu 38 311 -1 357 250 175 27 chr3 15247291 15247583 -212276995 + Tigger8 DNA MER2_type 187 521 -145 198 118 0 0 chr3 15247851 15247885 -212276693 + (A)n Simple_repeat Simple_repeat 1 34 0 945 157 0 0 chr3 15248005 15248158 -212276420 - AluSg/x SINE Alu -31 281 129 2256 100 7 0 chr3 15248844 15249145 -212275433 - AluSq SINE Alu -10 303 1 207 0 0 0 chr3 15249533 15249556 -212275022 + (A)n Simple_repeat Simple_repeat 1 23 0 981 112 129 6 chr3 15249699 15249869 -212274709 - AluSq SINE Alu -1 312 122 671 203 0 0 chr3 15251032 15251155 -212273423 - AluSc SINE Alu -185 124 2 2146 98 10 0 chr3 15251527 15251824 -212272754 + AluSq SINE Alu 1 300 -13 2301 90 0 0 chr3 15252646 15252956 -212271622 + AluY SINE Alu 1 310 -1 1295 222 3 7 chr3 15253142 15253426 -212271152 - AluJo SINE Alu -29 283 1 1154 115 81 77 chr3 15253454 15253689 -212270889 - MER46A DNA MER2_type 0 236 1 893 29 0 0 chr3 15253829 15253934 -212270644 - AluSc SINE Alu -204 105 1 1138 178 13 36 chr3 15254173 15254398 -212270180 - AluJo SINE Alu -18 294 75 29 0 0 0 chr3 15254418 15254447 -212270131 + AT_rich Low_complexity Low_complexity 1 29 0 2237 97 0 13 chr3 15254483 15254794 -212269784 + AluSc SINE Alu 2 308 -1 1263 165 0 5 chr3 15255167 15255391 -212269187 - AluY SINE Alu -88 223 1 809 155 0 16 chr3 15255393 15255522 -212269056 - AluJo/FLAM SINE Alu -180 132 6 2121 109 13 10 chr3 15255572 15255883 -212268695 + AluSx SINE Alu 1 312 0 929 171 28 17 chr3 15255891 15256067 -212268511 - AluJb SINE Alu -16 296 119 2153 122 0 0 chr3 15256174 15256485 -212268093 + AluSx SINE Alu 1 311 -1 1460 207 4 0 chr3 15256486 15256742 -212267836 - AluJb SINE Alu -55 257 1 693 260 22 22 chr3 15257316 15257497 -212267081 - AluJo SINE Alu -130 182 2 524 243 138 0 chr3 15257525 15257677 -212266901 + MER96 DNA MER1_type 1 173 -2 397 282 0 10 chr3 15257682 15257785 -212266793 - L2 LINE L2 -32 3281 3180 2191 110 10 0 chr3 15258441 15258750 -212265828 + AluSx SINE Alu 1 312 0 329 300 77 109 chr3 15258861 15259077 -212265501 - L1ME4a LINE L1 -7 6114 5915 1594 154 70 0 chr3 15259077 15259349 -212265229 - AluJo SINE Alu -21 291 1 329 300 77 109 chr3 15259349 15259535 -212265043 - L1ME4a LINE L1 -206 5915 5725 2005 138 0 7 chr3 15259541 15259839 -212264739 - AluSx SINE Alu -16 296 1 802 237 6 17 chr3 15259863 15260040 -212264538 + MER5B DNA MER1_type 4 178 0 1535 142 0 0 chr3 15260268 15260493 -212264085 - MER66A LTR ERV1 0 478 254 680 220 23 8 chr3 15260860 15260992 -212263586 + AluJb SINE Alu 134 267 -45 219 36 0 0 chr3 15261002 15261030 -212263548 + (AGGGGG)n Simple_repeat Simple_repeat 4 31 0 261 286 114 28 chr3 15261299 15261554 -212263024 + L2 LINE L2 2581 2857 -457 217 289 175 57 chr3 15261610 15261804 -212262774 + L2 LINE L2 2893 3109 -163 294 323 58 53 chr3 15262117 15262306 -212262272 + MIR SINE MIR 21 210 -52 895 154 7 7 chr3 15262736 15262879 -212261699 + AluJo SINE Alu 1 143 -169 2456 88 0 3 chr3 15262880 15263186 -212261392 + AluY SINE Alu 1 305 -6 306 170 0 0 chr3 15263189 15263236 -212261342 - AluJ/FRAM SINE Alu -35 267 221 680 260 94 69 chr3 15263254 15263688 -212260890 - HAL1 LINE L1 -2029 478 34 955 118 0 0 chr3 15263826 15263953 -212260625 - AluSq/x SINE Alu -185 127 1 308 156 104 0 chr3 15263968 15264045 -212260533 - L1M LINE L1 -996 5348 5264 235 269 104 0 chr3 15264323 15264390 -212260188 + L2 LINE L2 3149 3222 -50 1561 203 7 7 chr3 15264489 15264790 -212259788 - AluJo SINE Alu -6 306 6 22 0 0 0 chr3 15264795 15264817 -212259761 + AT_rich Low_complexity Low_complexity 1 22 0 404 307 129 6 chr3 15265073 15265236 -212259342 + MIR3 SINE MIR 26 208 0 500 101 0 45 chr3 15265289 15265378 -212259200 - FLAM_C SINE Alu -4 139 55 840 143 0 8 chr3 15265410 15265536 -212259042 + AluJo/FLAM SINE Alu 6 130 -182 2402 86 0 0 chr3 15265536 15265838 -212258740 - AluY SINE Alu -9 302 1 270 330 21 0 chr3 15265985 15266082 -212258496 - L2 LINE L2 -89 3183 3085 2007 103 10 55 chr3 15266312 15266623 -212257955 - AluSx SINE Alu -15 297 1 1932 119 0 4 chr3 15266656 15266924 -212257654 - AluSc SINE Alu -25 284 18 335 377 84 0 chr3 15266948 15267115 -212257463 - L2 LINE L2 -566 2748 2568 1511 154 17 80 chr3 15267381 15267680 -212256898 + AluJo SINE Alu 3 282 -30 772 178 14 115 chr3 15267684 15267892 -212256686 - AluJb SINE Alu -5 307 121 38 0 0 0 chr3 15267941 15267979 -212256599 + AT_rich Low_complexity Low_complexity 1 38 0 1750 170 45 28 chr3 15268131 15268530 -212256048 + L1MB2 LINE L1 5667 6072 -99 513 233 60 0 chr3 15268835 15268968 -212255610 - L1MB2 LINE L1 -3 6168 6028 351 228 114 42 chr3 15269167 15269334 -212255244 + MIR SINE MIR 49 227 -35 255 220 9 73 chr3 15271428 15271537 -212253041 - L1ME3A LINE L1 -109 6061 5960 898 240 106 37 chr3 15271695 15272019 -212252559 - L1MC5 LINE L1 -534 7427 7068 2199 130 51 23 chr3 15272019 15272373 -212252205 + THE1B LTR MaLR 1 364 0 898 240 106 37 chr3 15272373 15272452 -212252126 - L1MC5 LINE L1 -893 7068 6996 846 139 19 57 chr3 15272473 15272631 -212251947 - AluJo/FRAM SINE Alu -17 295 144 2185 106 0 20 chr3 15272632 15272821 -212251757 - AluSx SINE Alu -16 296 114 2124 130 56 31 chr3 15272821 15273176 -212251402 - THE1B LTR MaLR 0 364 1 2185 106 0 20 chr3 15273176 15273288 -212251290 - AluSx SINE Alu -198 114 1 271 287 78 0 chr3 15273349 15273478 -212251100 - HAL1b LINE L1 -684 664 526 418 238 66 33 chr3 15273484 15273506 -212251072 - L1MA10 LINE L1 -1 6333 6312 1189 240 85 51 chr3 15273506 15274204 -212250374 - HAL1b LINE L1 -14 6152 292 1050 87 14 0 chr3 15274211 15274349 -212250229 - FLAM_C SINE Alu -3 140 1 2229 106 10 10 chr3 15274349 15274518 -212250060 - AluSq SINE Alu -10 303 132 2423 83 10 0 chr3 15274518 15274818 -212249760 - AluY SINE Alu -8 303 1 2229 106 10 10 chr3 15274818 15274951 -212249627 - AluSq SINE Alu -180 133 1 1414 113 0 0 chr3 15274951 15275137 -212249441 + AluSg/x SINE Alu 109 294 -16 1920 160 76 78 chr3 15275148 15275647 -212248931 - MER11A LTR ERVK -738 528 31 1884 159 28 0 chr3 15276390 15276673 -212247905 - AluJo SINE Alu -21 291 1 1166 235 66 54 chr3 15276686 15277184 -212247394 + MLT1H1 LTR MaLR 10 513 -42 559 213 16 16 chr3 15277234 15277356 -212247222 + L2 LINE L2 3188 3309 -4 455 259 40 46 chr3 15277366 15277540 -212247038 - MER5A DNA MER1_type -1 188 16 330 196 11 43 chr3 15277981 15278073 -212246505 + L1MC5 LINE L1 7837 7925 -36 396 240 123 58 chr3 15278500 15278671 -212245907 + L1MC5 LINE L1 7451 7632 -329 1902 142 38 3 chr3 15278879 15279168 -212245410 + AluSx SINE Alu 1 299 -13 200 241 86 0 chr3 15279212 15279270 -212245308 - MIR SINE MIR -11 251 189 279 203 51 0 chr3 15279306 15279365 -212245213 + HAL1 LINE L1 8 69 -2438 512 241 80 0 chr3 15279370 15279482 -212245096 + MER58A DNA MER1_type 41 161 0 463 246 87 43 chr3 15279544 15279682 -212244896 - MIR SINE MIR -118 144 1 636 257 96 76 chr3 15279892 15280328 -212244250 + HAL1 LINE L1 34 478 -2029 277 200 20 0 chr3 15280343 15280393 -212244185 + AluJ/FRAM SINE Alu 217 267 -35 2104 148 0 0 chr3 15280396 15280699 -212243879 - AluSx SINE Alu -9 303 1 433 380 54 0 chr3 15280794 15280999 -212243579 + MIR SINE MIR 33 248 -14 337 318 59 6 chr3 15281299 15281469 -212243109 - L1M4 LINE L1 -1913 4233 4055 553 115 0 0 chr3 15281551 15281629 -212242949 - U6 snRNA snRNA -29 78 1 387 264 28 9 chr3 15282157 15282263 -212242315 - MIR SINE MIR -135 127 20 276 303 94 59 chr3 15282691 15282945 -212241633 + L2 LINE L2 2969 3231 -41 312 70 0 0 chr3 15283046 15283089 -212241489 + (TG)n Simple_repeat Simple_repeat 2 44 0 782 186 0 0 chr3 15283156 15283280 -212241298 + FLAM_C SINE Alu 2 125 -18 25 83 0 0 chr3 15283366 15283426 -212241152 + AT_rich Low_complexity Low_complexity 1 60 0 2263 113 0 23 chr3 15283426 15283736 -212240842 - AluSx SINE Alu -9 303 1 1994 147 10 0 chr3 15283736 15284028 -212240550 - AluJb SINE Alu -17 295 1 764 164 16 23 chr3 15284046 15284174 -212240404 - FLAM_C SINE Alu -14 129 3 23 0 0 0 chr3 15284277 15284300 -212240278 + AT_rich Low_complexity Low_complexity 1 23 0 1487 165 36 56 chr3 15284310 15284613 -212239965 + AluJo SINE Alu 1 297 -15 2302 122 0 0 chr3 15284613 15284924 -212239654 + AluSx SINE Alu 1 312 0 1224 213 8 12 chr3 15285023 15285267 -212239311 + MIR SINE MIR 20 262 0 568 266 24 16 chr3 15285755 15285773 -212238805 + MIR SINE MIR 17 33 -215 2647 30 0 13 chr3 15285773 15286077 -212238501 + AluY SINE Alu 1 300 -11 568 266 24 16 chr3 15286077 15286229 -212238349 + MIR SINE MIR 33 187 -61 219 243 122 27 chr3 15286270 15286344 -212238234 - MIR SINE MIR -64 144 64 416 70 18 0 chr3 15286426 15286483 -212238095 + MER30B DNA MER1_type 1 58 -132 1963 115 0 0 chr3 15286604 15286857 -212237721 - AluSg SINE Alu -57 253 1 1518 239 152 43 chr3 15286869 15287788 -212236790 - HAL1 LINE L1 -1045 1462 444 489 255 105 79 chr3 15287791 15288172 -212236406 - HAL1 LINE L1 -2109 398 8 301 257 202 0 chr3 15288178 15288287 -212236291 - HAL1 LINE L1 -1193 1314 1184 2160 126 10 0 chr3 15288333 15288634 -212235944 - AluSx SINE Alu -8 304 1 679 261 101 20 chr3 15289394 15289593 -212234985 + MER58C DNA MER1_type 1 215 0 223 316 10 41 chr3 15289662 15289760 -212234818 + (TCCA)n Simple_repeat Simple_repeat 1 95 0 274 219 78 0 chr3 15289824 15289888 -212234690 - L2 LINE L2 -51 3221 3153 433 181 81 128 chr3 15289985 15290134 -212234444 + MER103 DNA DNA 24 165 -1 2239 120 0 0 chr3 15290502 15290802 -212233776 + AluSx SINE Alu 1 300 -12 262 232 229 3 chr3 15290871 15291046 -212233532 - MIR SINE MIR -25 237 16 340 58 115 0 chr3 15291184 15291236 -212233342 + L1ME2 LINE L1 6093 6150 -14 2548 77 0 3 chr3 15291240 15291552 -212233026 - AluY SINE Alu 0 311 1 2264 113 0 7 chr3 15291766 15292066 -212232512 - AluSx SINE Alu -14 298 1 246 214 0 0 chr3 15292066 15292122 -212232456 - L1M3 LINE L1 -739 5441 5386 1044 78 8 0 chr3 15293038 15293167 -212231411 + AluSq/x SINE Alu 1 130 -182 2557 56 3 0 chr3 15293167 15293473 -212231105 + AluY SINE Alu 1 307 -4 2413 97 0 3 chr3 15293479 15293790 -212230788 + AluSx SINE Alu 1 310 -2 216 0 0 0 chr3 15293937 15293961 -212230617 + (T)n Simple_repeat Simple_repeat 1 24 0 1192 164 0 25 chr3 15294171 15294339 -212230239 - AluJo SINE Alu -11 301 130 222 37 0 0 chr3 15294339 15294366 -212230212 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2323 82 0 0 chr3 15294366 15294648 -212229930 - AluY SINE Alu -29 282 1 1192 164 0 25 chr3 15294648 15294679 -212229899 - AluJo SINE Alu -180 132 106 2242 54 58 0 chr3 15294679 15294957 -212229621 - AluY SINE Alu -17 294 1 1232 123 0 0 chr3 15295090 15295272 -212229306 - AluSg/x SINE Alu 0 299 118 2137 125 6 3 chr3 15295272 15295583 -212228995 - AluSq SINE Alu -1 312 1 1918 161 0 7 chr3 15295683 15295981 -212228597 - AluJb SINE Alu -12 300 5 799 160 8 0 chr3 15295982 15296107 -212228471 - AluJo/FLAM SINE Alu -184 128 3 283 228 22 22 chr3 15296525 15296617 -212227961 + MIR3 SINE MIR 90 181 -27 524 292 65 34 chr3 15297707 15298089 -212226489 - MLT1J LTR MaLR -7 504 73 909 144 0 0 chr3 15298335 15298474 -212226104 + AluSg/x SINE Alu 172 310 0 1918 149 0 30 chr3 15298579 15298874 -212225704 - AluSx SINE Alu -26 286 1 1031 118 7 0 chr3 15298874 15299009 -212225569 - AluSq/x SINE Alu -176 136 1 596 310 101 39 chr3 15299016 15299469 -212225109 - L2 LINE L2 -17 3296 2737 204 365 56 24 chr3 15299982 15300108 -212224470 + MIR SINE MIR 23 152 -56 * 523 224 35 9 chr3 15300072 15300188 -212224390 - MIR SINE MIR -106 156 38 1235 140 0 0 chr3 15300317 15300495 -212224083 - AluSg/x SINE Alu 0 310 133 356 241 12 18 chr3 15300788 15300899 -212223679 - MLT1I LTR MaLR 0 409 318 2380 93 0 10 chr3 15301061 15301372 -212223206 + AluY SINE Alu 1 308 -3 2607 150 56 0 chr3 15301373 15301840 -212222738 + L1MB7 LINE L1 5433 5925 -259 3084 185 41 19 chr3 15301848 15302487 -212222091 + MER6 DNA MER2_type 30 682 -183 245 259 86 0 chr3 15303735 15303816 -212220762 - MIR SINE MIR -63 145 58 233 285 197 15 chr3 15304193 15304330 -212220248 + MIR SINE MIR 3 173 -89 1720 184 97 35 chr3 15304855 15304975 -212219603 - Charlie4a DNA MER1_type -1457 504 393 924 178 6 6 chr3 15304975 15305132 -212219446 - FRAM SINE Alu -9 157 1 1720 184 97 35 chr3 15305132 15305467 -212219111 - Charlie4a DNA MER1_type -1568 393 21 346 249 214 75 chr3 15305788 15305989 -212218589 - MIR SINE MIR -17 245 17 180 0 0 0 chr3 15306324 15306344 -212218234 + (TGGG)n Simple_repeat Simple_repeat 1 20 0 225 301 24 12 chr3 15307395 15307478 -212217100 + MIR SINE MIR 55 138 -70 482 276 31 31 chr3 15307478 15307587 -212216991 + MIR SINE MIR 100 211 -51 2378 78 3 0 chr3 15307587 15307880 -212216698 + AluSp SINE Alu 16 309 -4 482 276 31 31 chr3 15307880 15307933 -212216645 + MIR SINE MIR 210 262 0 230 257 57 67 chr3 15307940 15308045 -212216533 - MIR SINE MIR -70 192 89 532 282 196 49 chr3 15309043 15309390 -212215188 - L2 LINE L2 0 3272 2875 381 270 51 51 chr3 15309742 15309879 -212214699 + L2 LINE L2 3136 3272 0 333 241 19 37 chr3 15310290 15310398 -212214180 - MIR SINE MIR -71 137 32 396 240 123 58 chr3 15510670 15510841 -212013737 - L1MC5 LINE L1 -329 7632 7451 330 196 11 43 chr3 15511268 15511360 -212013218 - L1MC5 LINE L1 -36 7925 7837 455 259 40 46 chr3 15511801 15511975 -212012603 + MER5A DNA MER1_type 16 188 -1 559 213 16 16 chr3 15511985 15512107 -212012471 - L2 LINE L2 -4 3309 3188 1166 235 66 54 chr3 15512157 15512655 -212011923 - MLT1H1 LTR MaLR -42 513 10 1884 159 28 0 chr3 15512668 15512951 -212011627 + AluJo SINE Alu 1 291 -21 2067 104 36 7 chr3 15514565 15514845 -212009733 - AluSx SINE Alu -24 288 1 2052 125 0 29 chr3 15514950 15515261 -212009317 - AluSx SINE Alu -10 302 1 1102 156 24 0 chr3 15515338 15515505 -212009073 - AluJb SINE Alu -10 302 132 1308 176 9 101 chr3 15515516 15515834 -212008744 - AluSx SINE Alu -23 289 1 1058 85 0 0 chr3 15515851 15515980 -212008598 + AluSq/x SINE Alu 14 142 -170 1933 129 28 14 chr3 15515983 15516270 -212008308 + AluJb SINE Alu 1 291 -21 839 124 7 51 chr3 15516703 15516840 -212007738 + FLAM_C SINE Alu 1 131 -2 22 35 0 0 chr3 15517190 15517219 -212007359 + AT_rich Low_complexity Low_complexity 1 29 0 238 241 81 0 chr3 15517664 15517751 -212006827 - L1ME LINE L1 -267 5854 5761 2091 108 42 0 chr3 15518213 15518501 -212006077 - AluSx SINE Alu -10 302 3 228 35 0 0 chr3 15518819 15518848 -212005730 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 223 226 161 0 chr3 15518874 15518936 -212005642 - L2 LINE L2 0 3313 3242 333 283 215 23 chr3 15519090 15519309 -212005269 + MIR SINE MIR 2 262 0 2353 102 0 0 chr3 15519661 15519956 -212004622 - AluSg SINE Alu -15 295 1 2291 130 0 0 chr3 15524054 15524361 -212000217 + AluSx SINE Alu 1 307 -5 394 275 163 42 chr3 15524372 15524456 -212000122 + HAL1 LINE L1 1046 1118 -1389 2077 133 10 0 chr3 15524456 15524757 -211999821 + AluSx SINE Alu 1 304 -8 394 275 163 42 chr3 15524757 15524912 -211999666 + HAL1 LINE L1 1118 1314 -1193 962 264 174 50 chr3 15524918 15525701 -211998877 + HAL1 LINE L1 8 887 -1620 602 208 121 65 chr3 15525901 15526109 -211998469 + HAL1 LINE L1 1243 1438 -1069 2334 117 0 0 chr3 15526109 15526417 -211998161 + AluSg SINE Alu 1 308 -2 602 208 121 65 chr3 15526417 15526473 -211998105 + HAL1 LINE L1 1438 1489 -1018 2280 114 3 7 chr3 15526473 15526780 -211997798 + AluSx SINE Alu 1 306 -6 602 208 121 65 chr3 15526780 15526836 -211997742 + HAL1 LINE L1 1489 1582 -925 339 220 189 38 chr3 15527127 15527418 -211997160 - Tigger8 DNA MER2_type -145 521 187 1626 159 0 28 chr3 15527479 15527762 -211996816 - AluSx SINE Alu 0 312 38 1935 145 37 3 chr3 15528244 15528541 -211996037 + AluSx SINE Alu 1 307 -5 214 224 86 0 chr3 15528586 15528644 -211995934 - MIR SINE MIR -11 251 189 279 203 51 0 chr3 15528680 15528739 -211995839 + HAL1 LINE L1 8 69 -2438 498 250 80 0 chr3 15528744 15528856 -211995722 + MER58A DNA MER1_type 41 161 0 463 246 87 43 chr3 15528918 15529056 -211995522 - MIR SINE MIR -118 144 1 360 266 168 53 chr3 15529647 15529856 -211994722 + MIR SINE MIR 1 232 -30 316 297 157 22 chr3 15529892 15530075 -211994503 - MIR SINE MIR -17 245 45 187 208 0 62 chr3 15530108 15530156 -211994422 + L2 LINE L2 3263 3307 -6 284 239 261 0 chr3 15530601 15530693 -211993885 - MER5A DNA MER1_type -35 154 39 212 197 0 33 chr3 15531549 15531610 -211992968 + CT-rich Low_complexity Low_complexity 2 60 0 27 62 0 0 chr3 15531764 15531812 -211992766 + AT_rich Low_complexity Low_complexity 1 48 0 231 279 153 9 chr3 15532101 15532212 -211992366 + MIR SINE MIR 20 146 -62 196 200 0 0 chr3 15532527 15532562 -211992016 - MIR SINE MIR -114 148 114 185 277 210 34 chr3 15532530 15532649 -211991929 - MIR3 SINE MIR -62 146 7 * 321 247 26 0 chr3 15533853 15533930 -211990648 - MIR SINE MIR -79 183 105 243 0 0 0 chr3 15534019 15534046 -211990532 + (T)n Simple_repeat Simple_repeat 1 27 0 240 200 150 0 chr3 15534250 15534330 -211990248 + MIR3 SINE MIR 110 201 -7 384 241 96 41 chr3 15534931 15535097 -211989481 + MIR SINE MIR 14 183 -61 261 203 40 54 chr3 15536073 15536147 -211988431 - MIR SINE MIR -77 131 59 189 250 197 76 chr3 15537106 15537238 -211987340 + MIR3 SINE MIR 35 182 -26 472 289 67 26 chr3 15538207 15538401 -211986177 - MIR3 SINE MIR -2 206 5 684 157 170 7 chr3 15539737 15539890 -211984688 - Tigger1 DNA MER2_type 0 2418 2241 1824 144 7 4 chr3 15539894 15540165 -211984413 - AluJb SINE Alu -23 289 18 522 153 59 0 chr3 15540166 15540251 -211984327 - MER33 DNA MER1_type -208 116 27 300 277 62 54 chr3 15540745 15540875 -211983703 - MER5A DNA MER1_type -22 167 37 399 241 98 0 chr3 15540978 15541111 -211983467 - L1MD3 LINE L1 -86 7909 7764 * 968 290 84 7 chr3 15541089 15541506 -211983072 - L1MEc LINE L1 -4189 2207 1759 704 192 0 0 chr3 15541506 15541631 -211982947 - AluJb SINE Alu -9 303 179 2384 119 0 0 chr3 15541700 15542010 -211982568 - AluSx SINE Alu -2 310 1 909 150 0 21 chr3 15542030 15542170 -211982408 - AluJo SINE Alu -175 137 1 496 213 92 67 chr3 15542173 15542412 -211982166 - L1MEc LINE L1 -4640 1756 1512 2268 89 31 3 chr3 15542420 15542712 -211981866 - AluSg1 SINE Alu -9 300 1 627 268 174 41 chr3 15542760 15542949 -211981629 - L1MEc LINE L1 -5842 554 391 2416 94 0 0 chr3 15542949 15543256 -211981322 - AluSx SINE Alu -5 307 1 627 268 174 41 chr3 15543256 15543458 -211981120 - L1MEc LINE L1 -6005 391 111 198 0 0 0 chr3 15543495 15543517 -211981061 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 7789 22 9 11 chr3 15543518 15544712 -211979866 - L1PA3 LINE L1 0 6155 4963 630 151 126 17 chr3 15544714 15544833 -211979745 - FLAM_C SINE Alu -1 132 1 1801 146 21 7 chr3 15544840 15545120 -211979458 - AluSx SINE Alu -18 294 11 180 294 189 7 chr3 15546365 15546508 -211978070 + MIR SINE MIR 90 258 -4 647 176 146 24 chr3 15547769 15547934 -211976644 + MER5A DNA MER1_type 5 189 0 1980 82 56 43 chr3 15548064 15548369 -211976209 + AluSx SINE Alu 1 309 -3 236 280 0 0 chr3 15548695 15548745 -211975833 + MIR SINE MIR 47 96 -112 1615 186 40 32 chr3 15548816 15549219 -211975359 + L1MB2 LINE L1 5667 6072 -99 505 233 60 0 chr3 15549524 15549657 -211974921 - L1MB2 LINE L1 -3 6168 6028 351 228 114 42 chr3 15549856 15550023 -211974555 + MIR SINE MIR 49 227 -35 244 202 18 83 chr3 15552118 15552227 -211972351 - L1ME3A LINE L1 -109 6061 5960 898 240 106 37 chr3 15552385 15552709 -211971869 - L1MC5 LINE L1 -534 7427 7068 2199 130 51 23 chr3 15552709 15553063 -211971515 + THE1B LTR MaLR 1 364 0 898 240 106 37 chr3 15553063 15553142 -211971436 - L1MC5 LINE L1 -893 7068 6996 861 139 19 51 chr3 15553163 15553321 -211971257 - AluJo/FRAM SINE Alu -16 296 144 2086 120 0 20 chr3 15553322 15553510 -211971068 - AluSx SINE Alu -17 295 114 1957 147 59 31 chr3 15553510 15553864 -211970714 - THE1B LTR MaLR 0 364 1 2086 120 0 20 chr3 15553864 15553976 -211970602 - AluSx SINE Alu -198 114 1 257 281 86 0 chr3 15554038 15554166 -211970412 - HAL1b LINE L1 -684 664 526 418 238 66 33 chr3 15554172 15554194 -211970384 - L1MA10 LINE L1 -1 6333 6312 1189 243 82 50 chr3 15554194 15554903 -211969675 - HAL1b LINE L1 -14 6152 282 851 122 30 15 chr3 15554904 15555035 -211969543 - FLAM_C SINE Alu 0 133 1 2349 96 7 0 chr3 15555039 15555340 -211969238 - AluSx SINE Alu -9 303 1 2697 154 50 21 chr3 15556256 15556312 -211968266 + L1MB7 LINE L1 5386 5439 -745 2306 115 0 10 chr3 15556312 15556624 -211967954 + AluSx SINE Alu 1 309 -3 2697 154 50 21 chr3 15556624 15557092 -211967486 + L1MB7 LINE L1 5439 5925 -259 3136 183 41 17 chr3 15557100 15557738 -211966840 + MER6 DNA MER2_type 30 682 -183 245 259 86 0 chr3 15558986 15559067 -211965511 - MIR SINE MIR -63 145 58 233 285 197 15 chr3 15559444 15559581 -211964997 + MIR SINE MIR 3 173 -89 1707 184 97 35 chr3 15560106 15560226 -211964352 - Charlie4a DNA MER1_type -1457 504 393 924 178 6 6 chr3 15560226 15560383 -211964195 - FRAM SINE Alu -9 157 1 1707 184 97 35 chr3 15560383 15560718 -211963860 - Charlie4a DNA MER1_type -1568 393 21 332 289 194 55 chr3 15561039 15561240 -211963338 - MIR SINE MIR -17 245 17 180 0 0 0 chr3 15561575 15561595 -211962983 + (TGGG)n Simple_repeat Simple_repeat 1 20 0 211 316 25 0 chr3 15562650 15562729 -211961849 + MIR SINE MIR 58 138 -70 474 308 31 6 chr3 15562733 15562838 -211961740 + MIR SINE MIR 100 212 -50 2271 78 3 0 chr3 15562838 15563131 -211961447 + AluSp SINE Alu 16 309 -4 474 308 31 6 chr3 15563131 15563184 -211961394 + MIR SINE MIR 212 262 0 211 276 48 57 chr3 15563191 15563296 -211961282 - MIR SINE MIR -70 192 89 470 325 175 38 chr3 15564294 15564636 -211959942 - L2 LINE L2 0 3272 2884 373 276 48 35 chr3 15564985 15565130 -211959448 + L2 LINE L2 3167 3313 0 313 241 19 37 chr3 15565541 15565649 -211958929 - MIR SINE MIR -71 137 32 326 195 13 0 chr3 15565865 15565942 -211958636 + GA-rich Low_complexity Low_complexity 1 78 0 671 137 30 18 chr3 15565958 15566126 -211958452 + GA-rich Low_complexity Low_complexity 5 174 0 434 281 47 8 chr3 15566684 15566812 -211957766 + MIR SINE MIR 50 182 -80 2090 82 24 10 chr3 15567500 15567791 -211956787 + AluSx SINE Alu 1 295 -17 527 0 16 0 chr3 15567791 15567854 -211956724 + (TCTA)n Simple_repeat Simple_repeat 2 65 0 182 180 220 0 chr3 15568373 15568423 -211956155 + MIR SINE MIR 89 149 -113 2211 114 0 0 chr3 15568698 15569006 -211955572 - AluSx SINE Alu -4 308 1 296 261 81 36 chr3 15569036 15569147 -211955431 + MIR3 SINE MIR 46 161 -47 464 333 68 5 chr3 15569295 15569487 -211955091 + MIR SINE MIR 5 208 -54 205 135 19 39 chr3 15569996 15570048 -211954530 + MIR SINE MIR 81 131 -77 233 342 68 27 chr3 15571343 15571606 -211952972 + L1M4 LINE L1 4641 4914 -1232 186 43 0 0 chr3 15572356 15572379 -211952199 + (TG)n Simple_repeat Simple_repeat 1 23 0 303 307 44 92 chr3 15574107 15574335 -211950243 + L1MCa LINE L1 1923 2139 -4287 306 323 0 42 chr3 15574198 15574294 -211950284 - L1MC4 LINE L1 -1363 6679 6588 217 243 29 43 chr3 15576274 15576344 -211948234 + MIR3 SINE MIR 103 171 -37 * 312 253 24 48 chr3 15576342 15576468 -211948110 + MIR3 SINE MIR 11 131 -91 185 257 0 0 chr3 15577405 15577440 -211947138 + MIR SINE MIR 117 151 -111 405 239 76 52 chr3 15582745 15582903 -211941675 + MIR SINE MIR 21 181 -63 467 31 0 0 chr3 15584622 15584687 -211939891 - AluSp/q SINE Alu -6 307 243 365 281 65 29 chr3 15584714 15584853 -211939725 + MIR SINE MIR 2 145 -117 188 189 0 0 chr3 15585688 15585725 -211938853 - MIR3 SINE MIR -22 186 150 784 271 74 13 chr3 15585886 15586185 -211938393 - MER113 DNA MER1_type? -197 324 8 2130 100 7 0 chr3 15587401 15587706 -211936872 - AluSx SINE Alu 0 307 1 272 266 0 0 chr3 15588093 15588172 -211936406 + MIR SINE MIR 68 146 -62 457 218 12 11 chr3 15588231 15588366 -211936212 + MIR SINE MIR 37 149 -59 465 248 6 64 chr3 15588615 15588772 -211935806 + MIR3 SINE MIR 16 163 -45 230 338 55 7 chr3 15589559 15589704 -211934874 - L1ME4a LINE L1 -9 6112 5961 354 195 18 0 chr3 15590790 15590873 -211933705 + MIR SINE MIR 100 183 -62 296 204 61 0 chr3 15591207 15591293 -211933285 + MIR SINE MIR 36 135 -73 192 311 173 33 chr3 15592947 15593374 -211931204 + L2 LINE L2 2478 2964 -350 377 340 15 0 chr3 15593937 15594134 -211930444 + L2 LINE L2 1893 2092 -1222 184 283 0 0 chr3 15594943 15594989 -211929589 + L2 LINE L2 3268 3313 0 434 161 74 0 chr3 15595163 15595244 -211929334 - MIR SINE MIR -65 143 57 1995 153 0 6 chr3 15595267 15595581 -211928997 + AluJo SINE Alu 1 312 0 220 261 31 0 chr3 15596341 15596406 -211928172 - MIR SINE MIR -80 128 62 362 277 115 0 chr3 15596812 15596942 -211927636 - MER117 DNA MER1_type -14 183 39 1866 194 87 27 chr3 15597686 15598124 -211926454 + MLT1C LTR MaLR 4 467 0 296 303 91 8 chr3 15598526 15598658 -211925920 + L3 LINE CR1 1336 1478 -99 371 386 29 6 chr3 15599011 15599182 -211925396 - L3 LINE CR1 -16 1561 1387 232 248 101 28 chr3 15599458 15599567 -211925011 - L2 LINE L2 -23 3249 3133 268 269 45 0 chr3 15599941 15600008 -211924570 + MIR SINE MIR 114 183 -79 215 358 60 7 chr3 15600108 15600259 -211924319 + L2 LINE L2 2899 3057 -215 21 0 0 0 chr3 15600452 15600473 -211924105 + AT_rich Low_complexity Low_complexity 1 21 0 212 289 333 0 chr3 15601331 15601421 -211923157 - MIR3 SINE MIR -52 156 37 374 261 111 20 chr3 15601589 15601742 -211922836 - MIR3 SINE MIR -16 192 26 339 25 0 0 chr3 15601888 15601928 -211922650 + (TG)n Simple_repeat Simple_repeat 1 40 0 285 294 137 0 chr3 15601949 15602051 -211922527 + MIR SINE MIR 31 146 -62 653 238 119 18 chr3 15602073 15602300 -211922278 - MER112 DNA MER1_type 0 260 11 279 0 0 0 chr3 15602704 15602735 -211921843 + (GA)n Simple_repeat Simple_repeat 1 31 0 227 281 16 16 chr3 15602785 15602849 -211921729 - L2 LINE L2 0 3272 3209 493 300 87 43 chr3 15602907 15603137 -211921441 - MIR SINE MIR -7 255 16 402 313 45 0 chr3 15603201 15603335 -211921243 - MIR3 SINE MIR -7 201 62 298 149 0 0 chr3 15604320 15604367 -211920211 - MIR SINE MIR -76 132 86 758 233 11 28 chr3 15604948 15605128 -211919450 - MER5B DNA MER1_type -1 177 1 297 225 28 0 chr3 15605132 15605203 -211919375 - MIR3 SINE MIR -50 158 86 1857 234 51 18 chr3 15606326 15606873 -211917705 - L1MD2 LINE L1 -9 6350 5786 438 150 12 12 chr3 15606896 15606976 -211917602 - MER116 DNA Mariner 0 80 1 566 128 0 0 chr3 15606980 15607058 -211917520 - AluS SINE Alu -235 78 1 251 242 81 10 chr3 15607081 15607180 -211917398 - L1ME LINE L1 -304 5866 5761 326 341 45 11 chr3 15607329 15607505 -211917073 + L2 LINE L2 2871 3052 -220 275 345 12 0 chr3 15607538 15607622 -211916956 + L2 LINE L2 3188 3272 0 275 226 0 0 chr3 15608222 15608275 -211916303 + MIR3 SINE MIR 116 168 -40 384 279 6 62 chr3 15608533 15608690 -211915888 - L1MCa LINE L1 -1339 6983 2001 196 369 31 56 chr3 15609051 15609211 -211915367 - MIR SINE MIR -74 188 33 3786 169 31 12 chr3 15609425 15610143 -211914435 + L1MB3 LINE L1 5453 6183 0 2058 136 0 13 chr3 15610169 15610485 -211914093 + AluSx SINE Alu 1 312 0 353 365 79 20 chr3 15610698 15610901 -211913677 - MIR SINE MIR -21 241 27 423 127 63 35 chr3 15611330 15611845 -211912733 + (TG)n Simple_repeat Simple_repeat 1 529 0 258 189 21 32 chr3 15611853 15611948 -211912630 + (TTGTG)n Simple_repeat Simple_repeat 1 94 0 198 118 0 0 chr3 15612148 15612182 -211912396 + (T)n Simple_repeat Simple_repeat 1 34 0 404 276 174 36 chr3 15612320 15612740 -211911838 - Tigger8 DNA MER2_type -2 664 187 1429 164 0 45 chr3 15612812 15613099 -211911479 - AluSx SINE Alu -1 311 38 2100 100 7 0 chr3 15613922 15614227 -211910351 - AluSx SINE Alu 0 307 1 253 260 0 0 chr3 15614620 15614693 -211909885 + MIR SINE MIR 74 146 -62 440 218 12 11 chr3 15614752 15614887 -211909691 + MIR SINE MIR 37 149 -59 445 248 6 64 chr3 15615136 15615293 -211909285 + MIR3 SINE MIR 16 163 -45 245 338 55 7 chr3 15616080 15616225 -211908353 - L1ME4a LINE L1 -9 6112 5961 345 195 18 0 chr3 15617311 15617394 -211907184 + MIR SINE MIR 100 183 -62 289 181 66 0 chr3 15617728 15617810 -211906768 + MIR SINE MIR 36 131 -77 323 325 20 5 chr3 15620459 15620656 -211903922 + L2 LINE L2 1893 2092 -1222 188 274 295 0 chr3 15621416 15621511 -211903067 + L2 LINE L2 3150 3272 0 429 161 74 0 chr3 15621685 15621766 -211902812 - MIR SINE MIR -65 143 57 1963 153 0 6 chr3 15621789 15622103 -211902475 + AluJo SINE Alu 1 312 0 207 261 31 0 chr3 15622863 15622928 -211901650 - MIR SINE MIR -80 128 62 403 277 115 0 chr3 15623334 15623464 -211901114 - MER117 DNA MER1_type -14 183 39 1865 203 80 20 chr3 15624208 15624646 -211899932 + MLT1C LTR MaLR 4 467 0 270 296 98 15 chr3 15625048 15625180 -211899398 + L3 LINE CR1 1336 1478 -99 346 373 26 31 chr3 15625533 15625726 -211898852 - L3 LINE CR1 -16 1561 1370 223 259 0 0 chr3 15625935 15625989 -211898589 - L2 LINE L2 -213 3059 3006 222 248 101 28 chr3 15625982 15626091 -211898487 - L2 LINE L2 -23 3249 3133 * 256 269 45 0 chr3 15626465 15626532 -211898046 + MIR SINE MIR 114 183 -79 198 358 60 7 chr3 15626632 15626783 -211897795 + L2 LINE L2 2899 3057 -215 21 0 0 0 chr3 15626976 15626997 -211897581 + AT_rich Low_complexity Low_complexity 1 21 0 201 289 333 0 chr3 15627855 15627945 -211896633 - MIR3 SINE MIR -52 156 37 352 263 70 7 chr3 15628113 15628266 -211896312 - MIR3 SINE MIR -16 192 24 2708 19 0 6 chr3 15628410 15628723 -211895855 + AluY SINE Alu 1 311 0 372 43 0 0 chr3 15628761 15628807 -211895771 + (TG)n Simple_repeat Simple_repeat 1 46 0 268 286 143 0 chr3 15628832 15628930 -211895648 + MIR SINE MIR 35 146 -62 711 238 119 18 chr3 15628952 15629179 -211895399 - MER112 DNA MER1_type 0 260 11 297 0 0 0 chr3 15629583 15629616 -211894962 + (GA)n Simple_repeat Simple_repeat 1 33 0 220 281 16 16 chr3 15629666 15629730 -211894848 - L2 LINE L2 0 3272 3209 467 296 87 43 chr3 15629788 15630018 -211894560 - MIR SINE MIR -7 255 16 383 313 45 0 chr3 15630082 15630216 -211894362 - MIR3 SINE MIR -7 201 62 305 146 0 0 chr3 15631200 15631248 -211893330 - MIR SINE MIR -75 133 86 746 189 33 50 chr3 15631828 15632008 -211892570 + MER5B DNA MER1_type 2 178 0 293 225 28 0 chr3 15632012 15632083 -211892495 - MIR3 SINE MIR -50 158 86 2084 229 51 15 chr3 15633206 15633751 -211890827 - L1MD2 LINE L1 -9 6350 5786 441 150 12 12 chr3 15633774 15633854 -211890724 - MER116 DNA Mariner 0 80 1 562 128 0 0 chr3 15633858 15633936 -211890642 - AluS SINE Alu -234 78 1 274 233 87 10 chr3 15633959 15634062 -211890516 - L1ME LINE L1 -296 5866 5756 325 331 55 0 chr3 15634238 15634383 -211890195 + L2 LINE L2 2900 3052 -220 264 345 12 0 chr3 15634416 15634500 -211890078 + L2 LINE L2 3188 3272 0 270 226 0 0 chr3 15635100 15635153 -211889425 + MIR3 SINE MIR 116 168 -40 365 245 37 43 chr3 15635411 15635545 -211889033 - L1MCa LINE L1 -1339 6983 2001 3969 155 31 12 chr3 15636304 15637022 -211887556 + L1MB3 LINE L1 5453 6183 0 2029 136 0 13 chr3 15637048 15637364 -211887214 + AluSx SINE Alu 1 312 0 293 361 62 5 chr3 15638602 15638810 -211885768 + L2 LINE L2 2813 3032 -240 180 360 11 22 chr3 15638794 15638883 -211885695 + MIR SINE MIR 60 147 -115 * 281 316 10 41 chr3 15638994 15639092 -211885486 - MIR SINE MIR 0 262 168 276 366 68 14 chr3 15639136 15639359 -211885219 + MIR SINE MIR 17 247 -15 * 548 313 0 0 chr3 15639348 15639498 -211885080 - MIR SINE MIR -100 162 13 330 288 212 0 chr3 15639505 15639623 -211884955 + MIR3 SINE MIR 30 172 -36 472 191 6 24 chr3 15639906 15640074 -211884504 + (TCCA)n Simple_repeat Simple_repeat 2 166 0 941 209 11 7 chr3 15640113 15640405 -211884173 + (TCCA)n Simple_repeat Simple_repeat 1 293 0 196 322 0 0 chr3 15640965 15641024 -211883554 + MIR SINE MIR 63 121 -87 629 227 213 0 chr3 15641103 15641310 -211883268 - MIR SINE MIR 0 262 12 2406 201 87 14 chr3 15642508 15643016 -211881562 + MLT1H LTR MaLR 2 546 -3 320 316 105 0 chr3 15644002 15644135 -211880443 + HAL1b LINE L1 1202 1348 0 246 318 96 44 chr3 15644603 15644844 -211879734 - MIR3 SINE MIR -3 259 11 976 160 16 94 chr3 15644907 15645224 -211879354 + MER33 DNA MER1_type 6 297 -2327 843 146 8 8 chr3 15645224 15645354 -211879224 - FLAM_C SINE Alu -2 131 2 976 160 16 94 chr3 15645354 15645417 -211879161 + MER33 DNA MER1_type 297 363 0 852 241 20 5 chr3 15646533 15646732 -211877846 + Charlie8 DNA MER1_type 61 262 -2155 626 237 39 56 chr3 15647205 15647437 -211877141 + MIR SINE MIR 28 255 -7 222 255 0 0 chr3 15647417 15647464 -211877114 + L2 LINE L2 3264 3310 -3 * 1013 241 70 70 chr3 15647535 15647909 -211876669 - L2 LINE L2 0 3313 2940 299 211 0 0 chr3 15647913 15647970 -211876608 - MIR SINE MIR -67 141 85 358 267 107 7 chr3 15648354 15648504 -211876074 + LTR16A1 LTR ERVL 263 427 -30 312 325 18 0 chr3 15649164 15649278 -211875300 + L2 LINE L2 2658 2773 -541 553 240 91 11 chr3 15649335 15649510 -211875068 - MIR SINE MIR -45 217 29 251 321 0 0 chr3 15649619 15649700 -211874878 - MIR3 SINE MIR -50 158 78 307 89 36 0 chr3 15651230 15651286 -211873292 + GA-rich Low_complexity Low_complexity 2 59 0 371 270 92 25 chr3 15651919 15652082 -211872496 - MIR SINE MIR -28 234 61 341 266 0 81 chr3 15652368 15652492 -211872086 - MIR SINE MIR -46 216 103 22 35 0 0 chr3 15652799 15652828 -211871750 + AT_rich Low_complexity Low_complexity 1 29 0 249 306 0 0 chr3 15653390 15653462 -211871116 + MIR SINE MIR 76 147 -115 1504 178 0 36 chr3 15653542 15653817 -211870761 - AluJo SINE Alu -47 265 1 2052 117 0 32 chr3 15653829 15654138 -211870440 - AluSx SINE Alu -13 299 1 281 160 264 66 chr3 15654425 15654531 -211870047 - MER5A DNA MER1_type -2 187 61 32 31 0 46 chr3 15654531 15654558 -211870020 + AT_rich Low_complexity Low_complexity 1 28 -34 322 44 0 0 chr3 15654558 15654603 -211869975 - L1PA3 LINE L1 0 6155 6111 32 31 0 46 chr3 15654603 15654640 -211869938 + AT_rich Low_complexity Low_complexity 28 62 0 318 256 0 0 chr3 15654640 15654718 -211869860 - MER5A DNA MER1_type -111 78 1 279 227 18 118 chr3 15654838 15654948 -211869630 - MER103 DNA DNA -65 101 3 1009 229 13 34 chr3 15655030 15655266 -211869312 + MIR SINE MIR 20 250 -12 224 291 0 0 chr3 15658051 15658106 -211866472 + (CA)n Simple_repeat Simple_repeat 1 55 0 227 214 18 18 chr3 15659640 15659696 -211864882 + L2 LINE L2 3258 3313 0 952 229 80 82 chr3 15660199 15660588 -211863990 + Charlie4a DNA MER1_type 120 507 -1 2377 147 17 17 chr3 15660862 15661269 -211863309 + L1MB3 LINE L1 5774 6180 -3 390 121 0 0 chr3 15661940 15662006 -211862572 + (TG)n Simple_repeat Simple_repeat 1 66 0 327 266 57 16 chr3 15662674 15662798 -211861780 - MIR3 SINE MIR -77 131 3 398 226 66 44 chr3 15664188 15664325 -211860253 + MIR3 SINE MIR 19 158 -50 232 129 0 113 chr3 15664571 15664633 -211859945 - L2 LINE L2 -93 3179 3125 194 316 218 10 chr3 15664865 15665058 -211859520 - MIR SINE MIR -10 252 20 358 232 36 72 chr3 15665836 15665974 -211858604 - MIR SINE MIR -80 182 50 275 266 124 0 chr3 15666466 15666579 -211857999 + MIR3 SINE MIR 45 171 -37 1167 278 124 2 chr3 15666709 15667127 -211857451 + L1MC4 LINE L1 7574 8042 0 383 295 66 12 chr3 15667172 15667338 -211857240 + Charlie8 DNA MER1_type 43 217 -2200 194 281 207 2 chr3 15667566 15667685 -211856893 - MIR SINE MIR -61 147 9 330 290 0 69 chr3 15667723 15667854 -211856724 - MIR SINE MIR -57 205 84 212 344 52 0 chr3 15668327 15668423 -211856155 - MIR SINE MIR -147 115 15 274 236 251 5 chr3 15668438 15668634 -211855944 - MIR3 SINE MIR -6 256 7 233 329 52 45 chr3 15669239 15669394 -211855184 - L3 LINE CR1 -58 1519 1364 253 325 196 0 chr3 15669658 15669821 -211854757 - L3 LINE CR1 -952 625 431 587 267 198 42 chr3 15670801 15671134 -211853444 + L2 LINE L2 2926 3310 -3 545 324 89 29 chr3 15671155 15671470 -211853108 + L2 LINE L2 2854 3187 -85 364 256 284 4 chr3 15671654 15671921 -211852657 + L2 LINE L2 2682 3023 -290 288 324 37 0 chr3 15672000 15672108 -211852470 + L2 LINE L2 3200 3311 -2 376 248 46 18 chr3 15672166 15672275 -211852303 + L2 LINE L2 3189 3300 -13 799 192 99 16 chr3 15673190 15673372 -211851206 + MER117 DNA MER1_type 1 197 0 548 267 161 14 chr3 15673941 15674158 -211850420 - MIR SINE MIR -1 261 13 311 286 111 8 chr3 15674177 15674303 -211850275 + MIR SINE MIR 77 215 -47 320 268 118 1 chr3 15674524 15674648 -211849930 + MIR SINE MIR 29 163 -62 190 272 40 96 chr3 15675262 15675387 -211849191 - MIR3 SINE MIR -89 119 2 501 276 79 39 chr3 15675856 15676059 -211848519 + MIR SINE MIR 52 262 0 365 270 108 0 chr3 15676507 15676618 -211847960 + MIR SINE MIR 27 149 -113 341 276 45 30 chr3 15677379 15677513 -211847065 + MIR3 SINE MIR 27 162 -46 250 249 58 45 chr3 15677579 15677683 -211846895 - MIR SINE MIR -96 112 7 1773 194 71 0 chr3 15677865 15678189 -211846389 + MER7A DNA MER2_type 2 346 0 243 284 147 43 chr3 15678190 15678412 -211846166 - MIR SINE MIR -13 249 13 206 214 0 14 chr3 15678864 15678934 -211845644 + CT-rich Low_complexity Low_complexity 2 70 0 372 247 43 0 chr3 15679303 15679396 -211845182 - MIR SINE MIR -49 213 117 207 0 0 0 chr3 15679814 15679837 -211844741 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 361 257 9 28 chr3 15680079 15680188 -211844390 + MIR SINE MIR 37 143 -65 545 240 105 1 chr3 15680371 15680536 -211844042 + MIR SINE MIR 16 197 -65 220 121 0 86 chr3 15680822 15680880 -211843698 + (TTTTTA)n Simple_repeat Simple_repeat 2 54 0 220 331 55 24 chr3 15681431 15681558 -211843020 + MER5A DNA MER1_type 33 163 -26 336 207 140 140 chr3 15681565 15681635 -211842943 + MIR SINE MIR 74 143 -119 860 118 0 0 chr3 15681635 15681754 -211842824 - L1PB1 LINE L1 -1 6150 6032 336 207 140 140 chr3 15681754 15681862 -211842716 + MIR SINE MIR 142 252 -10 1188 244 94 39 chr3 15682481 15682919 -211841659 + MLT1C LTR MaLR 6 467 0 379 223 248 6 chr3 15682978 15683135 -211841443 + MIR SINE MIR 9 203 -59 332 309 10 0 chr3 15683127 15683224 -211841354 - L2 LINE L2 0 3313 3216 * 267 331 50 8 chr3 15684577 15684698 -211839880 - L2 LINE L2 0 3272 3147 272 289 13 0 chr3 15685439 15685515 -211839063 + MIR3 SINE MIR 85 161 -47 744 236 63 80 chr3 15685872 15686109 -211838469 - MER102a DNA MER1_type 0 330 98 443 327 138 18 chr3 15686561 15686778 -211837800 + MIR SINE MIR 20 262 0 335 291 39 0 chr3 15686907 15687010 -211837568 + MIR3 SINE MIR 85 191 -17 454 234 135 21 chr3 15687370 15687511 -211837067 + MIR3 SINE MIR 14 170 -38 205 306 45 54 chr3 15687777 15687888 -211836690 + L2 LINE L2 2893 3002 -270 305 309 41 8 chr3 15687890 15688013 -211836565 + Charlie8 DNA MER1_type 9 135 -2282 194 267 22 56 chr3 15688145 15688235 -211836343 + L3 LINE CR1 1298 1384 -193 183 80 0 0 chr3 15688235 15688260 -211836318 + (T)n Simple_repeat Simple_repeat 1 25 0 1648 150 32 35 chr3 15688353 15688861 -211835717 - SVA Other Other -518 868 462 349 284 0 0 chr3 15689116 15689204 -211835374 - L2 LINE L2 0 3313 3226 354 233 29 29 chr3 15690489 15690592 -211833986 + MIR SINE MIR 47 149 -113 328 291 120 75 chr3 15691732 15691843 -211832735 + MIR SINE MIR 19 124 -138 2260 90 0 0 chr3 15691843 15692142 -211832436 - AluSq SINE Alu -14 299 1 328 291 120 75 chr3 15692142 15692264 -211832314 + MIR SINE MIR 124 262 0 718 243 24 0 chr3 15692294 15692463 -211832115 - MER5B DNA MER1_type 0 178 6 648 219 69 0 chr3 15692466 15692626 -211831952 + MER5A DNA MER1_type 17 187 -2 318 209 203 57 chr3 15694571 15694729 -211829849 + MER53 DNA DNA 9 189 0 276 272 128 24 chr3 15694778 15694903 -211829675 - MIR3 SINE MIR -54 154 17 292 330 80 8 chr3 15695217 15695406 -211829172 + MIR3 SINE MIR 37 243 -19 430 315 90 22 chr3 15695647 15695825 -211828753 - MIR SINE MIR -72 190 1 531 287 29 103 chr3 15696123 15696417 -211828161 + L1MC4a LINE L1 5746 6017 -104 2008 116 25 0 chr3 15696489 15696612 -211827966 + AluSx SINE Alu 1 119 -193 219 69 0 0 chr3 15696612 15696641 -211827937 + (TA)n Simple_repeat Simple_repeat 2 30 0 2008 116 25 0 chr3 15696641 15696802 -211827776 + AluSx SINE Alu 119 292 -20 402 283 206 17 chr3 15696914 15697094 -211827484 + MIR SINE MIR 32 245 -17 984 261 96 26 chr3 15697198 15697616 -211826962 + L2 LINE L2 2531 2977 -337 22 35 0 0 chr3 15697718 15697747 -211826831 + AT_rich Low_complexity Low_complexity 1 29 0 277 285 0 26 chr3 15698523 15698647 -211825931 - MIR SINE MIR -72 136 19 214 296 99 0 chr3 15698691 15698772 -211825806 + L2 LINE L2 2306 2394 -920 548 216 41 72 chr3 15699574 15699768 -211824810 + MIR SINE MIR 48 235 -27 216 352 37 28 chr3 15700348 15700456 -211824122 + MIR SINE MIR 93 201 -61 6452 184 74 89 chr3 15700764 15702979 -211821599 + Tigger1 DNA MER2_type 29 2210 -208 407 107 67 27 chr3 15702985 15703060 -211821518 + Tigger1 DNA MER2_type 2340 2417 -1 575 177 0 65 chr3 15703104 15703228 -211821350 + L2 LINE L2 3196 3311 -2 398 239 137 8 chr3 15703589 15703706 -211820872 + MIR SINE MIR 20 151 -111 424 248 71 18 chr3 15704945 15705058 -211819520 + MIR SINE MIR 30 148 -60 514 300 161 15 chr3 15705255 15705515 -211819063 + L2 LINE L2 3015 3312 -1 442 241 73 22 chr3 15705829 15705966 -211818612 - L2 LINE L2 -486 2828 2685 542 260 65 0 chr3 15706005 15706159 -211818419 - MIR SINE MIR -58 204 41 433 243 143 7 chr3 15706522 15706662 -211817916 + MIR SINE MIR 13 171 -91 1862 199 67 0 chr3 15707586 15707989 -211816589 - MER63B DNA MER1_type 0 436 7 399 291 32 51 chr3 15708584 15708742 -211815836 + MIR SINE MIR 3 144 -64 408 289 107 9 chr3 15708793 15708991 -211815587 - MIR SINE MIR -36 226 2 186 338 0 0 chr3 15709091 15709158 -211815420 - MIR SINE MIR -62 146 92 1146 143 12 76 chr3 15709166 15709497 -211815081 + MLT1B LTR MaLR 1 370 -20 365 295 59 7 chr3 15709574 15709712 -211814866 + MIR3 SINE MIR 65 208 0 243 191 0 0 chr3 15710338 15710385 -211814193 - MIR SINE MIR -63 145 99 325 281 11 35 chr3 15710716 15710851 -211813727 - MIR3 SINE MIR -14 194 60 677 120 0 0 chr3 15711214 15711306 -211813272 + AluJb SINE Alu 2 93 -219 * 722 144 10 0 chr3 15711301 15711405 -211813173 - AluSg/x SINE Alu -78 234 130 1402 117 19 0 chr3 15711405 15711611 -211812967 + AluJb SINE Alu 103 312 0 218 349 113 20 chr3 15711990 15712185 -211812393 + L2 LINE L2 2870 3082 -190 569 294 124 5 chr3 15712255 15712473 -211812105 + MIR SINE MIR 16 259 -3 2018 113 51 0 chr3 15712728 15713020 -211811558 - AluSx SINE Alu -4 308 2 197 213 21 0 chr3 15713194 15713241 -211811337 + L2 LINE L2 3266 3313 0 217 257 168 23 chr3 15713302 15713430 -211811148 - MIR SINE MIR -68 140 36 783 225 75 15 chr3 15714278 15714478 -211810100 - MIR SINE MIR 0 262 51 1428 244 68 35 chr3 15714791 15715250 -211809328 + MLT1K LTR MaLR 85 558 -30 377 295 0 0 chr3 15715346 15715454 -211809124 - MIR SINE MIR -63 145 52 217 322 161 0 chr3 15716377 15716464 -211808114 - L2 LINE L2 -1 3271 3171 472 292 29 23 chr3 15716682 15716853 -211807725 - MIR SINE MIR -66 196 25 824 237 106 0 chr3 15717902 15718109 -211806469 - MIR SINE MIR -32 230 2 205 254 0 15 chr3 15718266 15718333 -211806245 - MIR SINE MIR -133 129 64 220 214 0 0 chr3 15718338 15718380 -211806198 - MIR SINE MIR -102 160 119 188 331 61 39 chr3 15718489 15718670 -211805908 + L2 LINE L2 3004 3188 -84 183 303 49 57 chr3 15722583 15722705 -211801873 - MIR SINE MIR -64 144 24 346 305 133 8 chr3 15722782 15722910 -211801668 + MIR SINE MIR 17 160 -102 217 147 0 0 chr3 15723372 15723406 -211801172 - L2 LINE L2 -19 3294 3261 190 345 0 0 chr3 15723454 15723512 -211801066 + L2 LINE L2 3256 3313 0 490 307 61 12 chr3 15723550 15723713 -211800865 - MIR SINE MIR -87 175 5 241 326 15 45 chr3 15724436 15724568 -211800010 + MIR SINE MIR 84 211 -51 * 268 200 55 0 chr3 15724527 15724582 -211799996 - MIR SINE MIR -4 258 201 565 276 86 23 chr3 15724622 15724843 -211799735 + MIR SINE MIR 28 262 0 637 257 63 0 chr3 15724844 15725019 -211799559 - MIR SINE MIR -75 187 2 183 262 0 82 chr3 15725032 15725093 -211799485 + MIR SINE MIR 157 212 -50 713 205 5 0 chr3 15725317 15725542 -211799036 + (TCCA)n Simple_repeat Simple_repeat 1 226 0 185 330 144 8 chr3 15725542 15725660 -211798918 - L2 LINE L2 0 3272 3139 375 323 110 48 chr3 15726276 15726567 -211798011 + L2 LINE L2 2953 3261 -11 210 227 212 0 chr3 15726590 15726656 -211797922 + MIR SINE MIR 84 163 -99 310 234 133 9 chr3 15726889 15726998 -211797580 + MIR SINE MIR 73 192 -62 511 232 19 3 chr3 15727271 15727403 -211797175 + MIR3 SINE MIR 59 194 -14 523 276 111 0 chr3 15727878 15728059 -211796519 + MIR SINE MIR 56 256 -6 359 256 8 0 chr3 15729532 15729665 -211794913 + (TCCA)n Simple_repeat Simple_repeat 1 134 0 260 327 40 0 chr3 15730207 15730308 -211794270 - MIR SINE MIR -93 169 65 211 279 23 78 chr3 15730359 15730488 -211794090 + MIR3 SINE MIR 87 208 0 319 302 151 17 chr3 15731200 15731372 -211793206 - MIR SINE MIR -7 255 61 253 269 32 54 chr3 15733023 15733036 -211791542 + MER5A DNA MER1_type 1 11 -178 249 283 80 18 chr3 15733036 15733149 -211791429 - MER5A DNA MER1_type -1 188 69 696 253 72 27 chr3 15733971 15734192 -211790386 - MIR SINE MIR -1 261 31 192 379 11 0 chr3 15734433 15734520 -211790058 + L2 LINE L2 2890 2977 -337 620 319 75 0 chr3 15734897 15735138 -211789440 - MIR SINE MIR -3 259 1 424 269 8 30 chr3 15736137 15736271 -211788307 + MIR SINE MIR 97 227 -35 211 312 21 0 chr3 15736305 15736398 -211788180 - MIR SINE MIR -68 140 46 385 281 117 82 chr3 15737495 15737776 -211786802 - L3 LINE CR1 -12 1565 1275 326 272 10 19 chr3 15738490 15738593 -211785985 + MIR3 SINE MIR 104 205 -3 276 339 35 0 chr3 15739406 15739521 -211785057 - MIR SINE MIR -136 126 8 247 235 0 59 chr3 15740107 15740175 -211784403 - MIR SINE MIR -63 145 82 260 306 12 0 chr3 15740180 15740265 -211784313 + MER96 DNA MER1_type? 5 90 -85 752 242 79 5 chr3 15740685 15740875 -211783703 - MIR SINE MIR -1 261 58 227 320 126 0 chr3 15741512 15741615 -211782963 - MIR3 SINE MIR -18 190 75 775 254 21 5 chr3 15741741 15741930 -211782648 - MIR SINE MIR -70 192 1 396 169 0 0 chr3 15742845 15742922 -211781656 + (TG)n Simple_repeat Simple_repeat 2 78 0 294 286 27 34 chr3 15742941 15743088 -211781490 + GA-rich Low_complexity Low_complexity 5 150 0 675 191 7 41 chr3 15743112 15743259 -211781319 + L1MA7 LINE L1 6148 6289 -2 21 36 0 0 chr3 15743259 15743287 -211781291 + AT_rich Low_complexity Low_complexity 1 28 0 2353 32 0 3 chr3 15743292 15743574 -211781004 + AluY SINE Alu 26 306 -5 299 321 179 15 chr3 15744092 15744288 -211780290 + L2 LINE L2 3020 3247 -25 307 313 193 6 chr3 15744332 15744508 -211780070 - MIR SINE MIR -50 212 4 256 242 0 30 chr3 15744704 15744770 -211779808 - L2 LINE L2 0 3272 3209 1990 134 3 0 chr3 15744818 15745108 -211779470 + AluSx SINE Alu 1 291 -21 1719 289 98 12 chr3 15745184 15745998 -211778580 - L2 LINE L2 -338 2976 2093 212 129 0 0 chr3 15746914 15746945 -211777633 - L2 LINE L2 -19 3294 3264 462 264 52 14 chr3 15746953 15747118 -211777460 + MIR SINE MIR 15 147 -61 225 242 152 20 chr3 15747116 15747215 -211777363 - MIR SINE MIR -89 173 62 * 409 305 6 40 chr3 15748657 15748831 -211775747 - L1M4 LINE L1 -999 5147 4980 4511 182 34 3 chr3 15748841 15749949 -211774629 - L1MB3 LINE L1 0 6183 5043 404 315 105 33 chr3 15749980 15750265 -211774313 + L2 LINE L2 2324 2634 -680 1895 123 86 42 chr3 15750265 15750624 -211773954 + THE1C LTR MaLR 1 375 0 404 315 105 33 chr3 15750624 15750643 -211773935 + L2 LINE L2 2634 2650 -664 400 272 15 15 chr3 15750801 15750937 -211773641 + L2 LINE L2 2921 3056 -216 1792 133 18 25 chr3 15751282 15751567 -211773011 + AluJo SINE Alu 1 283 -29 372 242 153 0 chr3 15751700 15751824 -211772754 + MIR SINE MIR 108 250 -12 646 311 56 11 chr3 15752182 15752452 -211772126 + L2 LINE L2 2590 2871 -443 802 207 96 15 chr3 15752554 15752752 -211771826 + MLT1K LTR MaLR 375 588 0 1096 265 70 39 chr3 15752762 15753003 -211771575 + L2 LINE L2 2858 3090 -223 2130 100 0 0 chr3 15753003 15753318 -211771260 - AluSx SINE Alu 0 319 5 1096 265 70 39 chr3 15753318 15753430 -211771148 + L2 LINE L2 3090 3197 -116 753 167 0 0 chr3 15753430 15753544 -211771034 + MER81 DNA DNA 1 114 0 1096 265 70 39 chr3 15753544 15753630 -211770948 + L2 LINE L2 3197 3313 0 359 318 91 15 chr3 15753635 15753833 -211770745 - MIR SINE MIR -37 225 13 556 256 7 7 chr3 15754401 15754538 -211770040 - MIR SINE MIR -70 192 56 212 262 33 0 chr3 15754706 15754767 -211769811 - MIR SINE MIR -116 146 84 251 290 105 0 chr3 15755460 15755584 -211768994 + MIR3 SINE MIR 37 173 -35 240 261 14 5 chr3 15756296 15756391 -211768187 + MIR SINE MIR 49 145 -63 412 253 188 0 chr3 15756665 15756819 -211767759 - MIR SINE MIR -21 241 59 235 325 39 0 chr3 15757677 15757754 -211766824 + MIR SINE MIR 119 198 -64 495 48 0 0 chr3 15757778 15757840 -211766738 + (TG)n Simple_repeat Simple_repeat 2 63 0 575 330 149 3 chr3 15757867 15758193 -211766385 + L2 LINE L2 2764 3041 -272 240 35 0 0 chr3 15758193 15758222 -211766356 + (ATG)n Simple_repeat Simple_repeat 2 30 0 2077 88 0 28 chr3 15758223 15758507 -211766071 - AluSx SINE Alu -36 276 1 575 330 149 3 chr3 15758507 15758635 -211765943 + L2 LINE L2 3040 3313 0 264 175 0 0 chr3 15758722 15758785 -211765793 + (CA)n Simple_repeat Simple_repeat 1 63 0 349 248 152 0 chr3 15759046 15759151 -211765427 + L2 LINE L2 3193 3313 0 1206 171 0 8 chr3 15759456 15759931 -211764647 + (TCCA)n Simple_repeat Simple_repeat 1 471 0 842 19 0 9 chr3 15759943 15760048 -211764530 + (TTCC)n Simple_repeat Simple_repeat 1 104 0 1238 241 138 18 chr3 15760169 15760883 -211763695 + L2 LINE L2 2506 3312 -1 411 265 118 0 chr3 15761735 15761871 -211762707 + MIR SINE MIR 77 228 -34 1803 149 23 7 chr3 15761881 15762183 -211762395 - AluSx SINE Alu -4 308 2 2137 116 0 0 chr3 15762710 15763011 -211761567 - AluSq SINE Alu -12 301 1 797 208 28 17 chr3 15763286 15763464 -211761114 - MER104 DNA MER2_type 0 180 1 282 56 0 0 chr3 15764500 15764536 -211760042 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 745 287 103 22 chr3 15764561 15765154 -211759424 - L2 LINE L2 -49 3264 2624 992 239 45 4 chr3 15765737 15765984 -211758594 - MIR SINE MIR -2 260 4 227 312 72 0 chr3 15766143 15766236 -211758342 + MIR SINE MIR 64 118 -90 322 306 0 20 chr3 15766353 15766451 -211758127 - MIR SINE MIR -71 137 42 223 231 19 0 chr3 15766873 15766925 -211757653 + MIR SINE MIR 88 140 -68 217 196 0 22 chr3 15767259 15767305 -211757273 - MIR SINE MIR -117 145 101 757 236 138 38 chr3 15767733 15768080 -211756498 + LTR16A1 LTR ERVL 4 385 -72 324 279 49 8 chr3 15768245 15768367 -211756211 - MIR3 SINE MIR -47 161 35 357 282 30 23 chr3 15768770 15768901 -211755677 + MIR3 SINE MIR 14 145 -63 844 226 47 14 chr3 15768991 15769203 -211755375 - MIR SINE MIR -16 246 28 453 277 113 13 chr3 15769644 15769803 -211754775 - MIR SINE MIR -83 179 5 352 323 38 1 chr3 15770472 15770609 -211753969 - MIR SINE MIR -59 149 36 198 264 45 91 chr3 15770639 15770749 -211753829 - MIR SINE MIR -35 227 123 197 344 115 13 chr3 15770746 15770903 -211753675 - MIR SINE MIR -10 252 80 * 399 167 8 125 chr3 15771362 15771414 -211753164 + MIR SINE MIR 47 79 -183 2149 113 3 10 chr3 15771414 15771723 -211752855 - AluSx SINE Alu -5 307 1 399 167 8 125 chr3 15771723 15771790 -211752788 + MIR SINE MIR 79 152 -110 1677 235 51 27 chr3 15771856 15772307 -211752271 + MLT1C LTR MaLR 6 467 0 229 313 85 8 chr3 15772402 15772555 -211752023 - MIR SINE MIR -60 148 20 1407 114 0 0 chr3 15772859 15773052 -211751526 - AluJb SINE Alu -15 297 105 192 342 13 0 chr3 15773245 15773324 -211751254 + MIR3 SINE MIR 117 196 -12 413 262 9 9 chr3 15773818 15773925 -211750653 - MIR SINE MIR -71 137 31 296 284 71 16 chr3 15774002 15774129 -211750449 + MIR3 SINE MIR 61 194 -14 354 262 126 14 chr3 15774340 15774516 -211750062 + MIR SINE MIR 18 214 -48 201 133 0 0 chr3 15776842 15776872 -211747706 + (AAATG)n Simple_repeat Simple_repeat 1 30 0 24 32 0 0 chr3 15777092 15777123 -211747455 + GC_rich Low_complexity Low_complexity 1 31 0 183 100 0 0 chr3 15777214 15777244 -211747334 + (GGGA)n Simple_repeat Simple_repeat 2 31 0 284 323 36 30 chr3 15779234 15779401 -211745177 - MIR SINE MIR -67 195 28 232 265 112 10 chr3 15779639 15779737 -211744841 - L3 LINE CR1 -102 1475 1368 425 261 115 13 chr3 15779755 15779912 -211744666 + L2 LINE L2 2988 3160 -112 286 247 34 45 chr3 15779996 15780085 -211744493 - MIR3 SINE MIR -34 174 87 239 365 56 8 chr3 15780969 15781095 -211743483 - MIR SINE MIR -60 148 17 195 281 0 18 chr3 15781290 15781347 -211743231 + MIR SINE MIR 22 77 -185 1973 130 0 10 chr3 15783825 15784117 -211740461 - AluJb SINE Alu -23 289 1 384 287 132 12 chr3 15784271 15784438 -211740140 - MIR SINE MIR -64 198 12 7571 44 0 2 chr3 15784498 15785760 -211738818 + L1PA5 LINE L1 4894 6153 -1 2563 261 14 13 chr3 15785760 15786592 -211737986 - L1M4 LINE L1 -2613 3533 2701 622 242 20 20 chr3 15786721 15786874 -211737704 + MIR SINE MIR 22 174 -88 579 238 119 16 chr3 15787147 15787332 -211737246 - MIR SINE MIR -6 256 53 605 316 136 23 chr3 15787799 15788358 -211736220 + L2 LINE L2 2625 3272 0 211 298 0 0 chr3 15788717 15788774 -211735804 - L2 LINE L2 -2 3311 3255 288 252 148 40 chr3 15788916 15789112 -211735466 - MIR SINE MIR -11 251 18 477 0 0 0 chr3 15789381 15789434 -211735144 + (CA)n Simple_repeat Simple_repeat 1 53 0 258 311 0 22 chr3 15789472 15789562 -211735016 - MIR SINE MIR -61 147 60 492 261 14 14 chr3 15789730 15789868 -211734710 + MIR SINE MIR 13 150 -112 836 322 90 26 chr3 15789894 15790399 -211734179 - L2 LINE L2 0 3272 2733 787 263 17 38 chr3 15790908 15791144 -211733434 - MIR SINE MIR -27 235 5 225 199 0 36 chr3 15791458 15791514 -211733064 - MIR3 SINE MIR -49 159 105 628 237 95 38 chr3 15792009 15792220 -211732358 + MIR SINE MIR 21 243 -19 652 305 63 9 chr3 15792561 15792784 -211731794 + MIR SINE MIR 22 256 -6 795 219 137 0 chr3 15792869 15793052 -211731526 - MER63A DNA MER1_type 0 210 3 184 378 20 0 chr3 15793537 15793635 -211730943 + MIR SINE MIR 25 124 -138 250 279 63 45 chr3 15793658 15793769 -211730809 + MIR SINE MIR 63 175 -87 207 0 0 0 chr3 15793879 15793902 -211730676 + (TG)n Simple_repeat Simple_repeat 2 24 0 201 268 14 56 chr3 15794310 15794381 -211730197 + MIR3 SINE MIR 115 182 -26 304 310 57 45 chr3 15794501 15794746 -211729832 - MIR SINE MIR -6 256 9 181 306 125 0 chr3 15794715 15794787 -211729791 - L2 LINE L2 -24 3248 3168 * 260 308 84 9 chr3 15795767 15795874 -211728704 + MIR SINE MIR 81 195 -67 913 228 100 21 chr3 15795891 15796132 -211728446 - MIR SINE MIR 0 262 3 212 259 121 0 chr3 15796641 15796699 -211727879 - L2 LINE L2 -12 3301 3237 1947 117 52 0 chr3 15797382 15797672 -211726906 - AluSx SINE Alu -7 305 1 192 77 0 0 chr3 15797674 15797700 -211726878 + (T)n Simple_repeat Simple_repeat 1 26 0 194 321 0 0 chr3 15797973 15798029 -211726549 + L3 LINE CR1 422 477 -1100 533 319 74 5 chr3 15798715 15798931 -211725647 - MIR SINE MIR -12 250 20 21 0 0 0 chr3 15799022 15799043 -211725535 + AT_rich Low_complexity Low_complexity 1 21 0 401 269 0 10 chr3 15799229 15799333 -211725245 - MIR SINE MIR -140 122 20 416 228 57 16 chr3 15799618 15799741 -211724837 - MIR SINE MIR -52 210 83 390 347 24 6 chr3 15799753 15799920 -211724658 + MIR SINE MIR 85 254 -8 288 302 52 17 chr3 15800059 15800175 -211724403 - MIR SINE MIR -42 220 101 394 250 9 0 chr3 15800854 15800962 -211723616 + Charlie8 DNA MER1_type 41 149 -2268 849 268 13 34 chr3 15801217 15801452 -211723126 - MIR SINE MIR -31 231 2 599 212 94 18 chr3 15801581 15801751 -211722827 - MIR SINE MIR -60 202 20 299 295 21 0 chr3 15802172 15802267 -211722311 + MIR SINE MIR 46 142 -66 1566 211 0 3 chr3 15802268 15802580 -211721998 - L1MC3 LINE L1 -2 7783 7473 420 219 86 18 chr3 15802612 15802751 -211721827 + L1ME3 LINE L1 6016 6162 0 550 244 16 0 chr3 15802873 15803000 -211721578 + MIR SINE MIR 121 249 -13 365 327 24 7 chr3 15803628 15803765 -211720813 + MIR3 SINE MIR 13 157 -75 183 156 0 0 chr3 15803769 15803801 -211720777 + (TGG)n Simple_repeat Simple_repeat 1 32 0 397 323 26 15 chr3 15803817 15804012 -211720566 - MIR SINE MIR -30 232 36 614 244 71 18 chr3 15804195 15804363 -211720215 - MIR SINE MIR -66 196 20 1860 207 68 22 chr3 15806572 15807016 -211717562 + MLT1C LTR MaLR 4 467 0 295 359 60 18 chr3 15807137 15807304 -211717274 - MIR SINE MIR -9 253 80 708 237 119 23 chr3 15808286 15808505 -211716073 + MIR SINE MIR 19 258 -4 369 265 185 20 chr3 15808564 15808715 -211715863 + MIR SINE MIR 68 243 -19 189 309 149 11 chr3 15808988 15809082 -211715496 + L2 LINE L2 2689 2795 -519 217 160 80 0 chr3 15809823 15809873 -211714705 + MIR SINE MIR 97 150 -112 306 230 349 0 chr3 15810261 15810413 -211714165 - MIR SINE MIR -10 252 48 287 289 158 9 chr3 15811387 15811501 -211713077 - MIR SINE MIR -2 260 130 424 255 103 7 chr3 15811581 15811726 -211712852 + MIR SINE MIR 90 248 -14 1992 131 6 13 chr3 15811806 15812120 -211712458 - AluSx SINE Alu 0 312 1 4519 210 84 39 chr3 15812128 15812302 -211712276 - L1MD2 LINE L1 -13 6346 6181 297 0 0 0 chr3 15812302 15812335 -211712243 + (TG)n Simple_repeat Simple_repeat 2 34 0 4519 210 84 39 chr3 15812335 15813437 -211711141 - L1MD2 LINE L1 -178 6181 5130 2015 146 0 3 chr3 15813437 15813745 -211710833 - AluJo SINE Alu -5 307 1 4519 210 84 39 chr3 15813745 15815185 -211709393 - L1MD2 LINE L1 -1229 5130 3521 14918 52 7 0 chr3 15815175 15817776 -211706802 + L1PA5 LINE L1 3520 6136 -18 3037 58 0 0 chr3 15817776 15817798 -211706780 + L1P LINE L1 3520 6142 -743 195 274 20 0 chr3 15817802 15817853 -211706725 + MIR SINE MIR 97 148 -114 258 339 71 22 chr3 15818553 15818736 -211705842 - MIR SINE MIR -50 212 21 447 305 131 56 chr3 15819359 15820164 -211704414 + L2 LINE L2 2362 3271 -1 254 299 142 30 chr3 15821573 15821707 -211702871 + MIR3 SINE MIR 32 180 -28 466 275 69 0 chr3 15821740 15821871 -211702707 - MIR SINE MIR -77 185 46 531 284 99 6 chr3 15822756 15822918 -211701660 - MIR SINE MIR -72 190 14 794 236 109 60 chr3 15823049 15823397 -211701181 + L2 LINE L2 2911 3275 -38 238 310 180 0 chr3 15823460 15823560 -211701018 - MIR SINE MIR -81 181 64 424 255 71 35 chr3 15824049 15824190 -211700388 - MER5A DNA MER1_type -9 180 35 1372 314 59 67 chr3 15824416 15824959 -211699619 + L3 LINE CR1 709 1244 -333 2103 101 0 10 chr3 15824959 15825267 -211699311 - AluSq SINE Alu -8 305 1 1372 314 59 67 chr3 15825267 15825588 -211698990 + L3 LINE CR1 1244 1566 -11 253 222 283 0 chr3 15825790 15825889 -211698689 + MIR3 SINE MIR 3 129 -79 446 197 13 0 chr3 15826006 15826082 -211698496 - MER81 DNA DNA -37 77 1 313 216 0 102 chr3 15826082 15826170 -211698408 - MER5A DNA MER1_type -102 87 9 421 237 47 81 chr3 15827487 15827698 -211696880 + MIR SINE MIR 21 224 -38 577 217 6 6 chr3 15827930 15828064 -211696514 + GA-rich Low_complexity Low_complexity 2 138 -29 1877 151 0 22 chr3 15828064 15828383 -211696195 + AluJb SINE Alu 1 312 0 577 217 6 6 chr3 15828383 15828414 -211696164 + GA-rich Low_complexity Low_complexity 137 167 0 193 272 86 37 chr3 15828567 15828648 -211695930 + MIR SINE MIR 31 115 -147 480 312 85 0 chr3 15828804 15828993 -211695585 + MLT1K LTR MaLR 361 565 -23 979 271 164 14 chr3 15829141 15829661 -211694917 - L1MC4 LINE L1 0 8042 7445 583 254 12 12 chr3 15829825 15829998 -211694580 - L1ME2 LINE L1 -194 5970 5798 631 265 39 94 chr3 15830298 15830673 -211693905 + L2 LINE L2 2888 3232 -40 222 222 0 0 chr3 15830691 15830745 -211693833 + GA-rich Low_complexity Low_complexity 2 55 0 189 0 0 0 chr3 15831071 15831092 -211693486 + (CA)n Simple_repeat Simple_repeat 1 21 0 457 266 82 58 chr3 15831201 15831408 -211693170 + L1ME4a LINE L1 5614 5825 -296 5399 124 34 6 chr3 15831413 15832259 -211692319 + L1MC1 LINE L1 5449 6318 -15 902 254 40 0 chr3 15832419 15832647 -211691931 - MIR SINE MIR -24 238 2 242 244 130 32 chr3 15832658 15832781 -211691797 + L1ME4a LINE L1 5986 6120 -1 371 252 171 8 chr3 15833184 15833307 -211691271 + MIR SINE MIR 21 163 -99 1325 188 104 3 chr3 15833307 15833850 -211690728 + MLT1E1 LTR MaLR 1 653 -1 295 203 0 0 chr3 15834197 15834256 -211690322 + L1ME LINE L1 5753 5811 -351 667 168 35 0 chr3 15834523 15834636 -211689942 + L2 LINE L2 3197 3313 0 200 313 38 12 chr3 15835033 15835113 -211689465 + MIR SINE MIR 63 144 -64 2231 177 34 10 chr3 15835376 15835794 -211688784 + MSTA LTR MaLR 1 428 0 186 43 0 0 chr3 15836049 15836072 -211688506 + (CTCA)n Simple_repeat Simple_repeat 4 26 0 305 241 38 13 chr3 15836075 15836154 -211688424 - L2 LINE L2 -9 3263 3183 695 267 65 36 chr3 15836157 15836404 -211688174 - MIR SINE MIR -1 261 8 363 322 19 53 chr3 15836404 15836612 -211687966 - L2 LINE L2 -87 3185 2985 476 299 89 11 chr3 15836932 15837132 -211687446 + MIR SINE MIR 46 260 -2 28 48 0 0 chr3 15837667 15837709 -211686869 + AT_rich Low_complexity Low_complexity 1 42 0 265 263 220 34 chr3 15837709 15837827 -211686751 - MIR SINE MIR -109 153 14 391 255 0 66 chr3 15838216 15838322 -211686256 - L1MC4 LINE L1 -1330 6712 6614 * 395 236 35 0 chr3 15838249 15838357 -211686221 + L1MC4 LINE L1 1996 6983 -1339 816 101 0 62 chr3 15838357 15838486 -211686092 - FRAM SINE Alu -30 146 26 1065 249 111 31 chr3 15838629 15839054 -211685524 + MLT1K LTR MaLR 126 584 -4 268 281 21 21 chr3 15839160 15839256 -211685322 + MARNA DNA Mariner 348 443 -143 289 162 27 95 chr3 15839658 15839732 -211684846 + MIR SINE MIR 124 192 -70 222 37 0 0 chr3 15840062 15840089 -211684489 + (TG)n Simple_repeat Simple_repeat 1 27 0 464 278 107 0 chr3 15840091 15840260 -211684318 + MER91A DNA MER1_type 10 196 0 225 154 0 0 chr3 15840574 15840613 -211683965 + T-rich Low_complexity Low_complexity 1 39 0 2335 72 0 0 chr3 15840919 15841212 -211683366 + AluY SINE Alu 1 293 -18 263 235 62 12 chr3 15841217 15841298 -211683280 - MIR SINE MIR -12 250 166 243 204 0 0 chr3 15841459 15841503 -211683075 - MIR SINE MIR -111 151 108 649 284 37 9 chr3 15841685 15841905 -211682673 + MIR SINE MIR 35 258 -4 1918 155 0 0 chr3 15842127 15842430 -211682148 + AluSx SINE Alu 3 305 -7 188 138 0 0 chr3 15842448 15842477 -211682101 + MIR SINE MIR 66 94 -168 320 253 0 53 chr3 15842573 15842668 -211681910 - MIR SINE MIR -55 207 118 255 354 121 0 chr3 15843857 15843956 -211680622 + MIR SINE MIR 89 199 -63 453 62 0 0 chr3 15844967 15845032 -211679546 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 313 240 27 0 chr3 15845053 15845128 -211679450 - MIR SINE MIR -108 154 78 394 233 0 0 chr3 15845463 15845536 -211679042 + L2 LINE L2 3230 3302 -11 333 343 9 0 chr3 15845682 15845790 -211678788 + MIR SINE MIR 57 165 -97 261 234 141 0 chr3 15846487 15846573 -211678005 - MIR SINE MIR -51 157 49 413 233 60 9 chr3 15847912 15848028 -211676550 - L2 LINE L2 -12 3301 3180 658 248 0 0 chr3 15848256 15848381 -211676197 + L2 LINE L2 3189 3313 0 2356 191 63 39 chr3 15848525 15849092 -211675486 - L1MD2 LINE L1 -13 6346 5766 338 312 55 30 chr3 15849094 15849296 -211675282 - L1MD2 LINE L1 -509 5612 5406 1596 229 68 82 chr3 15849481 15849616 -211674962 + MLT1H LTR MaLR 45 180 -369 2060 96 43 127 chr3 15849616 15850011 -211674567 - THE1B LTR MaLR 0 364 3 1596 229 68 82 chr3 15850011 15850387 -211674191 + MLT1H LTR MaLR 180 549 0 498 269 39 8 chr3 15851531 15851661 -211672917 - MIR SINE MIR -109 153 20 457 274 97 10 chr3 15851854 15852045 -211672533 + MIR SINE MIR 40 248 -14 189 107 0 0 chr3 15852373 15852401 -211672177 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 234 360 45 9 chr3 15852409 15852520 -211672058 - L2 LINE L2 -20 3252 3138 500 224 48 8 chr3 15852675 15852800 -211671778 + MLT1L LTR MaLR 169 298 -317 356 273 125 0 chr3 15852873 15853001 -211671577 + MLT1L LTR MaLR 420 563 -52 330 262 57 33 chr3 15853352 15853474 -211671104 + MIR SINE MIR 108 232 -30 655 287 20 15 chr3 15853733 15853928 -211670650 + L1ME LINE L1 5614 5809 -312 315 301 26 7 chr3 15853995 15854148 -211670430 + HAL1b LINE L1 1179 1334 -14 2057 173 34 8 chr3 15854172 15854554 -211670024 + MSTD LTR MaLR 5 396 0 259 222 246 48 chr3 15854707 15854874 -211669704 - L3 LINE CR1 -104 1473 1274 1236 263 59 28 chr3 15855229 15855620 -211668958 - MLT1I LTR MaLR -1 408 6 235 271 0 0 chr3 15855644 15855692 -211668886 + polypurine Low_complexity Low_complexity 3 50 0 216 195 0 0 chr3 15856104 15856145 -211668433 - L2 LINE L2 -3 3310 3270 673 264 35 22 chr3 15856860 15857087 -211667491 - MIR SINE MIR -2 260 31 476 266 50 65 chr3 15858146 15858236 -211666342 + MIR SINE MIR 61 151 -111 2633 206 39 0 chr3 15858236 15858771 -211665807 + MER74A LTR ERVL 1 556 -2 476 266 50 65 chr3 15858771 15858879 -211665699 + MIR SINE MIR 151 256 -6 717 209 127 6 chr3 15858961 15859119 -211665459 - MER45A DNA AcHobo -1 177 1 278 305 67 19 chr3 15859930 15860035 -211664543 + L2 LINE L2 2957 3066 -206 335 263 23 4 chr3 15860176 15860312 -211664266 + MIR SINE MIR 57 252 -10 427 285 0 83 chr3 15860318 15860356 -211664222 + L2 LINE L2 3182 3222 -91 493 258 15 8 chr3 15860356 15860488 -211664090 - MER94 DNA DNA -1 133 1 427 285 0 83 chr3 15860488 15860593 -211663985 + L2 LINE L2 3222 3313 0 258 105 0 0 chr3 15860722 15860760 -211663818 + (TGAA)n Simple_repeat Simple_repeat 2 39 0 353 299 174 43 chr3 15861205 15861389 -211663189 - MIR SINE MIR -5 257 50 215 104 83 42 chr3 15861471 15861519 -211663059 + MIR SINE MIR 81 130 -78 7095 67 0 0 chr3 15862288 15863181 -211661397 + L1PA5 LINE L1 5261 6153 -1 4819 229 28 13 chr3 15863181 15864610 -211659968 - L1MDa LINE L1 -2613 3927 2478 3715 170 60 30 chr3 15864604 15865426 -211659152 - L1MDa LINE L1 -4332 2208 1363 * 728 104 0 0 chr3 15865504 15865600 -211658978 + MLT1B LTR MaLR 284 379 -11 1807 164 49 31 chr3 15865614 15866041 -211658537 + Charlie1 DNA MER1_type 2276 2703 -58 2310 117 0 0 chr3 15866041 15866339 -211658239 - AluSx SINE Alu -14 298 1 1807 164 49 31 chr3 15866339 15866400 -211658178 + Charlie1 DNA MER1_type 2703 2761 0 807 291 98 29 chr3 15866408 15866889 -211657689 + MER113 DNA MER1_type? 1 514 -7 620 248 26 63 chr3 15867230 15867500 -211657078 + L1ME3A LINE L1 5692 5951 -219 2277 123 3 0 chr3 15867548 15867858 -211656720 + AluSx SINE Alu 1 311 -1 538 262 40 15 chr3 15868041 15868243 -211656335 + L1ME4a LINE L1 5716 5922 -199 377 252 35 63 chr3 15869026 15869169 -211655409 - MIR SINE MIR -95 167 29 397 201 147 49 chr3 15869483 15869667 -211654911 + MIR3 SINE MIR 5 206 -2 400 240 50 0 chr3 15869890 15869990 -211654588 - MIR SINE MIR -63 145 41 250 309 0 64 chr3 15870494 15870604 -211653974 - MIR SINE MIR -12 250 148 243 100 0 140 chr3 15870716 15870766 -211653812 + LTR16C LTR ERVL 188 230 -261 1026 157 136 79 chr3 15870792 15871072 -211653506 + LTR16C LTR ERVL 193 488 -3 362 308 91 14 chr3 15871073 15871216 -211653362 - MIR SINE MIR -97 165 12 226 338 14 0 chr3 15871280 15871351 -211653227 - L2 LINE L2 0 3313 3242 * 274 290 90 24 chr3 15871346 15871513 -211653065 + MIR SINE MIR 9 190 -18 256 265 121 99 chr3 15871493 15871716 -211652862 + L2 LINE L2 3044 3271 -1 * 241 364 0 0 chr3 15871933 15872010 -211652568 + CT-rich Low_complexity Low_complexity 1 77 0 283 196 0 0 chr3 15872239 15872290 -211652288 - MIR SINE MIR -143 119 69 361 272 161 33 chr3 15874845 15875025 -211649553 - MIR SINE MIR -12 250 48 330 326 108 0 chr3 15875176 15875305 -211649273 - MIR SINE MIR -41 221 79 244 286 41 20 chr3 15875327 15875425 -211649153 + MIR SINE MIR 117 216 -46 326 298 79 0 chr3 15875560 15875674 -211648904 + L2 LINE L2 3141 3263 -9 192 268 89 0 chr3 15875875 15875931 -211648647 - MIR3 SINE MIR -39 169 109 231 264 14 28 chr3 15876500 15876572 -211648006 - MIR SINE MIR -56 152 82 813 205 51 52 chr3 15876591 15877022 -211647556 + MLT1D LTR MaLR 1 505 0 321 267 92 42 chr3 15877029 15877149 -211647429 - MIR3 SINE MIR -6 202 77 181 304 185 0 chr3 15877408 15877500 -211647078 + MIR SINE MIR 117 225 -37 379 258 11 0 chr3 15877686 15877775 -211646803 + L2 LINE L2 2970 3059 -213 2272 108 0 3 chr3 15878204 15878500 -211646078 - AluSx SINE Alu -17 295 1 908 264 101 43 chr3 15878588 15878986 -211645592 - L2 LINE L2 -14 3299 2879 727 245 38 22 chr3 15879115 15879299 -211645279 - MIR SINE MIR -56 206 20 184 309 53 21 chr3 15880035 15880129 -211644449 - MIR SINE MIR -164 98 2 1024 249 31 90 chr3 15880433 15880942 -211643636 + MLT1K LTR MaLR 39 517 -71 197 143 0 41 chr3 15881145 15881194 -211643384 + (GGAGA)n Simple_repeat Simple_repeat 5 51 0 1944 136 82 0 chr3 15881502 15881832 -211642746 + L1MA5 LINE L1 5944 6300 0 296 284 147 0 chr3 15881873 15881982 -211642596 - MIR SINE MIR -63 145 21 545 328 187 28 chr3 15882752 15883577 -211641001 + L2 LINE L2 2320 3270 -2 660 138 49 49 chr3 15883767 15883841 -211640737 - MIR SINE MIR -104 158 82 2369 105 39 30 chr3 15883841 15884202 -211640376 + THE1B LTR MaLR 1 364 0 660 138 49 49 chr3 15884202 15884250 -211640328 - MIR SINE MIR -179 83 36 465 219 47 0 chr3 15885001 15885129 -211639449 + L1ME LINE L1 5657 5790 -331 748 309 28 12 chr3 15885417 15885669 -211638909 - MIR SINE MIR -4 258 3 548 231 27 20 chr3 15886022 15886169 -211638409 - MIR SINE MIR -36 226 79 611 154 114 20 chr3 15886519 15886668 -211637910 + LTR33A LTR ERVL 352 514 -9 733 253 85 86 chr3 15887146 15887601 -211636977 + MLT1J LTR MaLR 19 450 0 319 343 21 29 chr3 15887701 15887841 -211636737 + L2 LINE L2 2503 2641 -673 296 232 29 14 chr3 15888007 15888076 -211636502 + MIR SINE MIR 36 105 -157 526 206 84 0 chr3 15888085 15888192 -211636386 + MIR SINE MIR 7 122 -140 204 289 0 0 chr3 15888212 15888302 -211636276 + (CCCA)n Simple_repeat Simple_repeat 3 92 0 180 152 0 0 chr3 15888421 15888454 -211636124 + (TCCA)n Simple_repeat Simple_repeat 1 33 0 532 204 15 0 chr3 15888699 15888831 -211635747 - MER20B DNA MER1_type -69 714 581 736 309 113 0 chr3 15888983 15889310 -211635268 - MER20B DNA MER1_type -267 516 153 188 240 67 67 chr3 15889599 15889674 -211634904 + MIR SINE MIR 79 153 -109 758 284 43 17 chr3 15889758 15889990 -211634588 + MIR SINE MIR 22 259 -3 361 333 87 0 chr3 15891327 15891477 -211633101 - MIR SINE MIR -78 184 22 505 276 32 60 chr3 15891529 15891748 -211632830 - MIR SINE MIR -14 248 36 303 262 10 48 chr3 15892336 15892439 -211632139 + LTR67 LTR ERVL 4 102 -455 263 352 106 7 chr3 15892476 15892618 -211631960 + MIR3 SINE MIR 52 207 -1 618 282 94 4 chr3 15894175 15894409 -211630169 + MLT1H LTR MaLR 3 257 -292 374 248 0 80 chr3 15894615 15894686 -211629892 + MIR SINE MIR 148 206 -56 1023 110 0 0 chr3 15894686 15894841 -211629737 + L1MB3 LINE L1 6028 6182 -1 374 248 0 80 chr3 15894841 15894894 -211629684 + MIR SINE MIR 206 262 0 532 305 98 11 chr3 15895062 15895236 -211629342 - MIR3 SINE MIR -10 198 10 302 250 161 24 chr3 15895805 15895929 -211628649 - MER5A DNA MER1_type -1 188 48 489 255 142 66 chr3 15896296 15896767 -211627811 - HAL1 LINE L1 -1399 1108 602 263 160 20 20 chr3 15897614 15897664 -211626914 - MIR SINE MIR -110 152 103 198 268 0 18 chr3 15897704 15897760 -211626818 + MIR SINE MIR 161 215 -47 632 130 0 0 chr3 15897762 15897862 -211626716 + L1MB3 LINE L1 6028 6127 -56 305 318 104 55 chr3 15898286 15898487 -211626091 - MIR SINE MIR -50 212 2 1786 179 7 3 chr3 15898673 15898981 -211625597 - AluJb SINE Alu -3 309 1 2379 71 37 0 chr3 15899084 15899378 -211625200 + AluSg SINE Alu 1 305 -5 429 295 0 0 chr3 15899387 15899482 -211625096 + MER5A DNA MER1_type 15 109 -80 270 261 192 31 chr3 15899634 15899764 -211624814 - MIR3 SINE MIR -46 162 12 285 295 13 94 chr3 15900272 15900421 -211624157 + MIR SINE MIR 14 150 -112 2437 224 38 46 chr3 15900423 15900634 -211623944 + L1ME3 LINE L1 5451 5662 -500 1737 105 0 13 chr3 15900634 15900872 -211623706 + AluY SINE Alu 71 305 -6 2437 224 38 46 chr3 15900872 15901352 -211623226 + L1ME3 LINE L1 5662 6136 -26 242 207 16 8 chr3 15901517 15901580 -211622998 + MIR SINE MIR 93 152 -63 1058 88 0 7 chr3 15901692 15901828 -211622750 + AluSq/x SINE Alu 1 135 -178 2131 117 0 3 chr3 15901828 15902150 -211622428 + AluSx SINE Alu 1 321 0 541 260 9 24 chr3 15902588 15902759 -211621819 + L2 LINE L2 3108 3312 -1 734 257 65 19 chr3 15903070 15903284 -211621294 + MER58A DNA MER1_type 1 224 0 709 256 12 19 chr3 15903310 15903470 -211621108 - MIR SINE MIR -55 207 49 656 218 103 0 chr3 15904052 15904208 -211620370 + MIR SINE MIR 86 257 -5 577 261 110 57 chr3 15904741 15905124 -211619454 - L2 LINE L2 -102 3211 2809 268 245 0 0 chr3 15905221 15905270 -211619308 + L2 LINE L2 3214 3262 -10 256 258 163 0 chr3 15905937 15906085 -211618493 - MIR SINE MIR -55 207 32 278 337 10 0 chr3 15906273 15906374 -211618204 - L2 LINE L2 -25 3247 3146 1403 274 117 36 chr3 15907008 15907517 -211617061 + L2 LINE L2 2221 2687 -626 2457 66 10 0 chr3 15907517 15907819 -211616759 + AluY SINE Alu 1 305 -6 1403 274 117 36 chr3 15907819 15908299 -211616279 + L2 LINE L2 2687 3292 -21 592 267 36 0 chr3 15908631 15908796 -211615782 - MIR SINE MIR -33 229 59 247 261 101 43 chr3 15909177 15909315 -211615263 + L2 LINE L2 3009 3154 -159 1481 182 4 44 chr3 15909333 15909608 -211614970 + AluJb SINE Alu 21 284 -28 198 150 0 0 chr3 15909608 15909648 -211614930 + (TA)n Simple_repeat Simple_repeat 1 40 0 425 277 65 19 chr3 15909673 15909684 -211614894 + L2 LINE L2 3152 3161 -152 2079 135 30 0 chr3 15909684 15909981 -211614597 - AluSx SINE Alu -6 306 1 425 277 65 19 chr3 15909981 15910044 -211614534 + L2 LINE L2 3161 3220 -93 291 28 0 0 chr3 15910044 15910080 -211614498 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 425 277 65 19 chr3 15910080 15910159 -211614419 + L2 LINE L2 3220 3313 0 233 349 0 0 chr3 15910384 15910450 -211614128 - L2 LINE L2 0 3313 3248 498 179 216 56 chr3 15910464 15910626 -211613952 - MER20B DNA MER1_type -24 195 8 472 303 26 13 chr3 15910967 15911122 -211613456 - MIR SINE MIR -8 254 98 190 302 0 0 chr3 15911976 15912019 -211612559 + L2 LINE L2 3210 3252 -20 2168 211 69 66 chr3 15912026 15912740 -211611838 + L1ME1 LINE L1 5449 6164 -2 2095 130 0 10 chr3 15915095 15915387 -211609191 - AluJb SINE Alu -23 289 1 412 239 156 36 chr3 15915541 15915708 -211608870 - MIR SINE MIR -64 198 12 7225 33 0 3 chr3 15915768 15917044 -211607534 + L1PA5 LINE L1 4894 6167 0 340 216 139 9 chr3 15917057 15917215 -211607363 - MIR SINE MIR -13 249 71 493 283 53 13 chr3 15917760 15917912 -211606666 - MIR SINE MIR -63 199 42 739 321 17 0 chr3 15918108 15918405 -211606173 + L2 LINE L2 2767 3067 -246 381 303 92 7 chr3 15918569 15918711 -211605867 + L2 LINE L2 3159 3312 -1 597 217 0 0 chr3 15919294 15919474 -211605104 + (CA)n Simple_repeat Simple_repeat 1 180 0 510 217 0 0 chr3 15919519 15919685 -211604893 + (CA)n Simple_repeat Simple_repeat 1 166 0 542 280 13 19 chr3 15919916 15920073 -211604505 + MIR SINE MIR 13 168 -94 689 225 30 55 chr3 15920537 15920737 -211603841 + MIR SINE MIR 10 204 -58 235 232 158 0 chr3 15923722 15923817 -211600761 + MIR SINE MIR 37 146 -62 511 269 163 29 chr3 15924727 15925076 -211599502 - MER113 DNA MER1_type? -125 396 1 267 319 130 32 chr3 15925397 15925613 -211598965 + MIR SINE MIR 20 256 -6 433 302 133 44 chr3 15926226 15926729 -211597849 + L2 LINE L2 2240 2787 -527 581 284 147 4 chr3 15926885 15927110 -211597468 + Charlie8 DNA MER1_type 9 265 -2152 346 316 26 0 chr3 15927550 15927664 -211596914 - MIR SINE MIR -29 233 117 1357 212 3 35 chr3 15927865 15927954 -211596624 + AluJo SINE Alu 33 123 -189 2375 105 0 0 chr3 15927954 15928249 -211596329 - AluSx SINE Alu -17 295 1 1357 212 3 35 chr3 15928249 15928447 -211596131 + AluJo SINE Alu 123 311 -1 423 245 46 58 chr3 15928477 15928653 -211595925 + MIR SINE MIR 42 214 -48 267 237 158 0 chr3 15929095 15929171 -211595407 + L2 LINE L2 3179 3266 -6 297 0 0 0 chr3 15929181 15929214 -211595364 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 741 93 0 0 chr3 15929213 15929320 -211595258 + (GA)n Simple_repeat Simple_repeat 2 108 0 185 178 22 0 chr3 15929466 15929511 -211595067 + MIR SINE MIR 70 115 -147 1090 141 0 12 chr3 15930579 15930742 -211593836 + FRAM SINE Alu 2 162 -14 301 398 47 21 chr3 15930951 15931230 -211593348 + L2 LINE L2 2985 3270 -2 375 280 47 23 chr3 15932308 15932457 -211592121 - L1MC4 LINE L1 -1306 7016 1995 471 311 89 26 chr3 15934054 15934244 -211590334 + MIR SINE MIR 59 260 -2 1303 288 104 18 chr3 15934523 15935121 -211589457 + L2 LINE L2 1792 2440 -874 1577 272 71 53 chr3 15935147 15935849 -211588729 + MER21B LTR ERV1 25 739 -124 1021 262 192 8 chr3 15935862 15936572 -211588006 + L2 LINE L2 2458 3313 0 449 271 15 41 chr3 15936843 15937024 -211587554 + MIR SINE MIR 19 192 -62 456 299 85 24 chr3 15937345 15937639 -211586939 - L2 LINE L2 -419 2895 2584 196 208 42 0 chr3 15937693 15937741 -211586837 - L2 LINE L2 -831 2483 2434 1962 168 54 0 chr3 15938440 15938810 -211585768 + MLT1B LTR MaLR 1 390 0 719 289 61 48 chr3 15939041 15939563 -211585015 - L1ME4a LINE L1 -3 6118 5590 378 262 14 64 chr3 15939832 15939973 -211584605 - MIR SINE MIR -118 144 11 624 276 113 0 chr3 15940448 15940669 -211583909 + MIR SINE MIR 11 256 -6 1101 259 71 25 chr3 15942764 15943212 -211581366 - LTR33 LTR ERVL -52 469 1 259 250 48 29 chr3 15943756 15943860 -211580718 - MIR3 SINE MIR -41 167 62 433 217 22 0 chr3 15944032 15944124 -211580454 - MIR SINE MIR -58 150 100 574 304 31 5 chr3 15945162 15945353 -211579225 + MIR SINE MIR 43 238 -24 1875 148 34 17 chr3 15945355 15945653 -211578925 - AluJo SINE Alu -4 308 6 405 304 17 0 chr3 15946180 15946295 -211578283 + MIR3 SINE MIR 42 158 -50 437 214 62 9 chr3 15946361 15946473 -211578105 - MER103 DNA DNA -46 120 3 196 276 0 0 chr3 15946523 15946581 -211577997 + MIR3 SINE MIR 151 208 0 347 67 0 33 chr3 15946986 15947046 -211577532 + (TGAA)n Simple_repeat Simple_repeat 2 59 0 983 217 70 60 chr3 15948085 15948454 -211576124 - MER113 DNA MER1_type? -147 374 2 290 273 40 0 chr3 15948454 15948553 -211576025 - MIR3 SINE MIR -47 161 59 594 234 0 0 chr3 15948788 15949006 -211575572 + (TGGA)n Simple_repeat Simple_repeat 1 218 0 468 0 0 0 chr3 15949166 15949218 -211575360 + (CA)n Simple_repeat Simple_repeat 2 53 0 315 350 56 12 chr3 15949247 15949407 -211575171 + MIR3 SINE MIR 16 182 -26 385 298 63 13 chr3 15949778 15949936 -211574642 + MIR SINE MIR 37 202 -60 641 315 106 17 chr3 15949999 15950672 -211573906 - L2 LINE L2 0 3313 2572 2615 216 17 25 chr3 15951058 15951646 -211572932 + MER82 DNA MER2_type 1 583 -70 290 253 94 6 chr3 15951835 15951993 -211572585 - MIR SINE MIR -70 192 14 3152 71 11 13 chr3 15952463 15952911 -211571667 - L1PA13 LINE L1 0 6163 5717 258 200 83 0 chr3 15952919 15952979 -211571599 + MIR SINE MIR 79 143 -119 242 257 71 82 chr3 15953037 15953221 -211571357 - MIR SINE MIR -50 212 32 642 262 112 5 chr3 15953319 15953533 -211571045 + MIR SINE MIR 13 249 -13 557 241 83 7 chr3 15953673 15953818 -211570760 - MIR SINE MIR -92 170 15 208 322 111 0 chr3 15954299 15954389 -211570189 + MIR SINE MIR 25 124 -84 453 267 154 39 chr3 15954406 15954691 -211569887 + MER102b DNA MER1_type 22 339 -2 180 237 0 0 chr3 15954811 15954849 -211569729 + L2 LINE L2 3267 3304 -9 704 267 26 10 chr3 15955370 15955565 -211569013 + MIR SINE MIR 15 212 -50 331 215 0 0 chr3 15956360 15956425 -211568153 + MLT1L LTR MaLR 327 391 -224 399 267 48 0 chr3 15957461 15957566 -211567012 - Charlie8 DNA MER1_type -2246 171 62 8032 232 65 13 chr3 15958821 15961355 -211563223 + L1MEc LINE L1 35 2657 -3558 625 226 0 30 chr3 15961353 15961517 -211563061 + L1M4 LINE L1 5046 5204 -942 * 1864 179 38 3 chr3 15961596 15961942 -211562636 - MLT1A1 LTR MaLR -7 358 1 749 266 20 23 chr3 15961949 15962255 -211562323 - LTR33 LTR ERVL -125 396 29 310 298 0 39 chr3 15962277 15962381 -211562197 - MER81 DNA DNA -14 100 1 240 289 13 13 chr3 15962411 15962487 -211562091 - MIR SINE MIR -101 161 86 382 335 109 22 chr3 15963076 15963306 -211561272 + L3 LINE CR1 442 691 -886 197 336 10 29 chr3 15963486 15963590 -211560988 + L3 LINE CR1 915 1016 -561 581 306 73 37 chr3 15963593 15963920 -211560658 - MER102b DNA MER1_type -2 339 1 251 296 0 0 chr3 15964124 15964178 -211560400 + (CCCA)n Simple_repeat Simple_repeat 4 57 0 696 164 11 38 chr3 15964178 15964361 -211560217 + (TCCA)n Simple_repeat Simple_repeat 2 179 0 898 244 68 0 chr3 15964389 15964610 -211559968 + MIR SINE MIR 5 240 -22 422 318 54 14 chr3 15964643 15964791 -211559787 - L2 LINE L2 -5 3267 3114 2680 245 81 39 chr3 15965193 15965366 -211559212 + L1MC4 LINE L1 6757 6921 -1121 231 36 0 0 chr3 15965366 15965394 -211559184 + (CAA)n Simple_repeat Simple_repeat 3 30 0 2680 245 81 39 chr3 15965394 15966178 -211558400 + L1MC4 LINE L1 6921 7755 -287 4683 167 38 3 chr3 15966184 15967213 -211557365 + L1MB5 LINE L1 5100 6165 -9 542 215 47 130 chr3 15967222 15967542 -211557036 + L1MC4 LINE L1 7749 8042 0 709 291 52 3 chr3 15967595 15967901 -211556677 + L1MC4 LINE L1 7689 8009 -33 936 302 86 62 chr3 15970453 15971324 -211553254 + L2 LINE L2 1880 2771 -543 309 143 20 0 chr3 15971329 15971378 -211553200 - MER3 DNA MER1_type 0 209 160 683 198 41 0 chr3 15971387 15971508 -211553070 - FLAM_C SINE Alu -16 127 2 684 208 84 7 chr3 15971509 15971663 -211552915 - MER3 DNA MER1_type -43 166 1 270 328 148 15 chr3 15971663 15971891 -211552687 + L2 LINE L2 2769 3023 -249 331 109 0 31 chr3 15971900 15971964 -211552614 + (TGGA)n Simple_repeat Simple_repeat 2 63 0 2039 122 71 40 chr3 15971964 15972317 -211552261 + THE1B LTR MaLR 1 364 0 5195 77 20 10 chr3 15972317 15973010 -211551568 + THE1B-int LTR MaLR 1 700 -880 4323 96 2 0 chr3 15972996 15973558 -211551020 + THE1B-int LTR MaLR 1018 1580 0 * 2103 135 72 29 chr3 15973558 15973907 -211550671 + THE1B LTR MaLR 1 364 0 913 131 17 0 chr3 15973921 15974096 -211550482 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 3267 173 41 0 chr3 15974836 15975421 -211549157 + L1MB3 LINE L1 5573 6181 -2 309 314 73 0 chr3 15975940 15976064 -211548514 - MIR SINE MIR -21 241 109 731 315 14 0 chr3 15976320 15976542 -211548036 - MIR SINE MIR -15 247 23 403 269 106 14 chr3 15976551 15976692 -211547886 + L2 LINE L2 3116 3269 -3 291 259 159 59 chr3 15977040 15977210 -211547368 - MER5A DNA MER1_type -1 188 2 559 291 42 12 chr3 15977620 15977785 -211546793 + MER5A DNA MER1_type 20 189 0 375 243 29 0 chr3 15977806 15977918 -211546660 + MER5A DNA MER1_type 4 119 -70 745 233 157 80 chr3 15978882 15979489 -211545089 - L2 LINE L2 -26 3287 2625 324 279 27 0 chr3 15979523 15979634 -211544944 + L2 LINE L2 2896 3009 -263 40233 52 3 1 chr3 15979809 15985552 -211539026 + L1PA5 LINE L1 399 6158 0 195 274 20 0 chr3 15985556 15985607 -211538971 + MIR SINE MIR 97 148 -114 28 29 0 0 chr3 15985965 15986000 -211538578 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr3 15986131 15986155 -211538423 + AT_rich Low_complexity Low_complexity 1 24 0 284 226 11 32 chr3 15988870 15988963 -211535615 + T-rich Low_complexity Low_complexity 3 93 0 23 0 0 0 chr3 15989485 15989508 -211535070 + GC_rich Low_complexity Low_complexity 1 23 0 225 94 0 0 chr3 15989741 15989773 -211534805 + (CCG)n Simple_repeat Simple_repeat 3 34 0 279 241 43 0 chr3 15989793 15989909 -211534669 + (CCG)n Simple_repeat Simple_repeat 3 123 0 * 308 270 26 26 chr3 15989831 15989983 -211534595 + C-rich Low_complexity Low_complexity 4 155 0 591 299 57 13 chr3 15991991 15992299 -211532279 - Charlie8 DNA MER1_type -2142 275 41 260 303 17 42 chr3 15992517 15992636 -211531942 + MIR SINE MIR 34 149 -59 213 39 0 0 chr3 15992639 15992665 -211531913 + (TG)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr3 15993745 15993767 -211530811 + AT_rich Low_complexity Low_complexity 1 22 0 210 362 53 0 chr3 15993893 15993987 -211530591 - MIR SINE MIR -10 252 154 722 263 61 0 chr3 15994124 15994322 -211530256 + LTR16A1 LTR ERVL 246 455 -2 229 210 175 0 chr3 15994322 15994406 -211530172 - MIR SINE MIR -46 162 60 279 355 43 48 chr3 15994914 15995145 -211529433 + L3 LINE CR1 760 989 -588 1398 253 80 6 chr3 15995549 15995913 -211528665 + LTR16C LTR ERVL 88 478 -13 1318 280 77 47 chr3 15996003 15997127 -211527451 + L1MC4a LINE L1 4741 5873 -248 761 171 20 0 chr3 15997127 15997279 -211527299 - L1MB7 LINE L1 0 6184 6030 1318 280 77 47 chr3 15997279 15997321 -211527257 + L1MC4a LINE L1 5873 5912 -209 258 116 0 0 chr3 15997328 15997371 -211527207 + (CA)n Simple_repeat Simple_repeat 2 44 0 359 279 113 60 chr3 15997494 15997620 -211526958 - L2 LINE L2 -435 2879 2761 1126 179 20 0 chr3 15997620 15997821 -211526757 + MER3 DNA MER1_type 5 209 0 359 279 113 60 chr3 15997821 15998127 -211526451 - L2 LINE L2 -553 2761 2424 209 206 29 0 chr3 15998125 15998193 -211526385 + L2 LINE L2 2840 2909 -404 * 349 267 30 10 chr3 15998486 15998587 -211525991 + L2 LINE L2 3211 3313 0 1041 63 0 14 chr3 15999107 15999249 -211525329 + L1PA5 LINE L1 6015 6154 0 609 192 120 48 chr3 15999421 15999588 -211524990 - MIR SINE MIR -1 261 83 354 303 127 7 chr3 15999834 15999976 -211524602 + MIR SINE MIR 92 250 -12 1578 120 25 104 chr3 16000280 16000606 -211523972 + AluYb8 SINE Alu 1 300 -18 2001 182 14 6 chr3 16001025 16001387 -211523191 - MLT1A1 LTR MaLR 0 365 1 315 224 0 0 chr3 16001402 16001478 -211523100 + (TG)n Simple_repeat Simple_repeat 1 76 0 381 280 27 54 chr3 16002867 16003088 -211521490 + MIR SINE MIR 18 232 -30 394 290 94 37 chr3 16003198 16003495 -211521083 + MLT1I LTR MaLR 68 428 -18 332 267 0 13 chr3 16003516 16003591 -211520987 - L2 LINE L2 -15 3298 3225 214 346 25 12 chr3 16004073 16004154 -211520424 - L2 LINE L2 -2 3311 3230 332 323 87 0 chr3 16005012 16005139 -211519439 - MIR SINE MIR -55 153 16 180 313 0 0 chr3 16005781 16005829 -211518749 - L2 LINE L2 0 3313 3266 243 320 54 14 chr3 16005846 16005993 -211518585 - MIR3 SINE MIR -17 191 39 204 236 0 36 chr3 16006410 16006465 -211518113 + GA-rich Low_complexity Low_complexity 4 56 0 249 33 0 0 chr3 16006594 16006624 -211517954 + (GGAGA)n Simple_repeat Simple_repeat 3 32 0 292 256 12 23 chr3 16006819 16006905 -211517673 + MIR3 SINE MIR 92 176 -32 326 253 75 124 chr3 16007061 16007247 -211517331 - MER5A DNA MER1_type -6 183 7 208 305 0 0 chr3 16007724 16007806 -211516772 + MIR SINE MIR 130 211 -51 279 224 60 0 chr3 16007951 16008018 -211516560 + L2 LINE L2 2917 2987 -285 1180 163 38 14 chr3 16008140 16008349 -211516229 - MER20 DNA MER1_type 0 219 6 346 392 20 7 chr3 16008370 16008518 -211516060 + L2 LINE L2 3123 3272 0 389 281 10 10 chr3 16008531 16008627 -211515951 - MIR3 SINE MIR -98 110 15 232 291 223 0 chr3 16008759 16008862 -211515716 - MIR SINE MIR -77 185 60 314 321 53 49 chr3 16009087 16009498 -211515080 + L1MEd LINE L1 511 923 -5196 * 404 227 55 0 chr3 16009487 16009597 -211514981 - L1MD3 LINE L1 -1 7994 7879 891 240 0 6 chr3 16010120 16010295 -211514283 + MLT1G1 LTR MaLR 1 174 -421 1197 153 0 30 chr3 16010300 16010503 -211514075 + Tigger2a DNA MER2_type 1 197 -237 1195 98 0 6 chr3 16010506 16010670 -211513908 - AluSg/x SINE Alu -17 295 133 1402 113 86 0 chr3 16010670 16010891 -211513687 + Tigger2a DNA MER2_type 195 434 0 772 230 20 33 chr3 16010895 16011257 -211513321 + MLT1G1 LTR MaLR 140 593 0 802 234 83 5 chr3 16011690 16011882 -211512696 - MIR SINE MIR -40 222 16 1936 189 25 27 chr3 16012113 16012283 -211512295 - MLT1A1 LTR MaLR 0 365 196 2727 90 98 5 chr3 16012283 16012693 -211511885 + LTR7 LTR ERV1 1 448 -2 1936 189 25 27 chr3 16012693 16012888 -211511690 - MLT1A1 LTR MaLR -169 196 1 427 250 8 16 chr3 16012938 16013062 -211511516 + L1ME3A LINE L1 4904 5026 -1120 1723 209 74 19 chr3 16013081 16013502 -211511076 + L1ME3A LINE L1 5718 6161 -9 365 223 96 81 chr3 16013558 16013755 -211510823 + L1MB7 LINE L1 5264 5463 -2345 6147 249 54 41 chr3 16013757 16013852 -211510726 + L1MEc LINE L1 10 102 -6113 291 85 0 0 chr3 16013852 16013899 -211510679 + (CA)n Simple_repeat Simple_repeat 2 48 0 6147 249 54 41 chr3 16013899 16015399 -211509179 + L1MEc LINE L1 102 1608 -4607 3334 184 37 18 chr3 16015399 16015699 -211508879 + L1MB7 LINE L1 5493 5786 -398 2484 162 18 0 chr3 16015699 16016088 -211508490 + MSTD LTR MaLR 1 396 0 3334 184 37 18 chr3 16016088 16016465 -211508113 + L1MB7 LINE L1 5786 6183 -1 6147 249 54 41 chr3 16016465 16017282 -211507296 + L1MEc LINE L1 1608 2413 -3802 1648 180 78 30 chr3 16017867 16018239 -211506339 + MLT1B LTR MaLR 1 390 0 445 226 146 33 chr3 16018472 16018684 -211505894 - MIR SINE MIR -19 243 8 2660 43 0 0 chr3 16019425 16019724 -211504854 + AluY SINE Alu 1 299 -12 495 287 91 48 chr3 16021063 16021293 -211503285 - MIR SINE MIR -2 260 21 568 265 100 22 chr3 16022250 16022480 -211502098 + LTR16C LTR ERVL 244 491 0 271 288 47 34 chr3 16022925 16023084 -211501494 + MIR SINE MIR 34 190 -18 540 221 101 27 chr3 16023296 16023445 -211501133 + MLT1J2 LTR MaLR 291 450 0 691 216 226 19 chr3 16023497 16023705 -211500873 - MIR SINE MIR -11 251 1 208 289 0 0 chr3 16023726 16023771 -211500807 + MIR SINE MIR 206 250 -12 222 274 81 0 chr3 16024921 16024983 -211499595 - MIR SINE MIR -112 150 84 213 308 31 0 chr3 16025026 16025091 -211499487 + MER5B DNA MER1_type 1 67 -111 302 321 28 18 chr3 16025291 16025400 -211499178 - MIR3 SINE MIR -16 192 83 202 258 70 27 chr3 16026014 16026139 -211498439 + MIR SINE MIR 19 147 -61 620 230 86 86 chr3 16026514 16026818 -211497760 - L1ME3A LINE L1 -8 6162 5859 594 215 98 0 chr3 16026815 16026978 -211497600 - L1ME3A LINE L1 -727 5435 5257 * 1098 262 19 22 chr3 16028451 16028764 -211495814 - MLT1I LTR MaLR 0 409 98 473 144 144 0 chr3 16029030 16029134 -211495444 + MER103 DNA DNA 2 120 -46 624 204 32 81 chr3 16029171 16029357 -211495221 + MER5B DNA MER1_type 1 177 -1 290 309 43 21 chr3 16029737 16029831 -211494747 + L2 LINE L2 3161 3256 -16 219 284 46 55 chr3 16030409 16030518 -211494060 - MER5A DNA MER1_type 0 189 82 1678 219 73 2 chr3 16030606 16031057 -211493521 + LTR16C LTR ERVL 1 483 -8 393 271 16 25 chr3 16031489 16031611 -211492967 + Charlie8 DNA MER1_type 92 212 -2205 418 322 82 28 chr3 16032896 16033151 -211491427 - L2 LINE L2 -168 3104 2836 254 198 139 0 chr3 16033374 16033460 -211491118 - MIR SINE MIR -71 137 40 225 224 35 138 chr3 16033886 16034002 -211490576 - MIR3 SINE MIR -47 161 58 192 224 0 0 chr3 16034273 16034340 -211490238 + A-rich Low_complexity Low_complexity 1 67 0 456 280 63 21 chr3 16034471 16034660 -211489918 - MER117 DNA MER1_type 0 197 1 406 242 105 17 chr3 16034710 16034839 -211489739 - MIR SINE MIR -62 146 22 685 306 23 31 chr3 16035883 16036144 -211488434 - MIR SINE MIR -2 260 2 279 345 17 11 chr3 16036322 16036496 -211488082 + MER117 DNA MER1_type 6 180 -17 266 179 291 0 chr3 16036859 16036977 -211487601 - MIR SINE MIR -80 182 23 267 182 0 18 chr3 16037020 16037075 -211487503 + MER5B DNA MER1_type 119 172 -6 428 302 102 8 chr3 16037085 16037349 -211487229 - MIR SINE MIR -19 243 8 293 226 104 43 chr3 16037354 16037469 -211487109 + L1ME2 LINE L1 6041 6162 -2 484 229 49 33 chr3 16037711 16037833 -211486745 + L2 LINE L2 3147 3270 -2 1009 166 13 0 chr3 16038276 16038433 -211486145 + FRAM SINE Alu 2 160 -6 428 221 55 19 chr3 16038887 16039015 -211485563 + MIR SINE MIR 60 191 -62 336 271 35 12 chr3 16039135 16039220 -211485358 + MIR SINE MIR 12 98 -164 233 213 0 21 chr3 16039270 16039317 -211485261 + L2 LINE L2 3217 3262 -10 382 250 30 0 chr3 16039825 16039925 -211484653 - MER5A DNA MER1_type -83 106 4 643 253 110 0 chr3 16040636 16040790 -211483788 - MER5B DNA MER1_type -6 172 2 2603 180 5 0 chr3 16041806 16042228 -211482350 - MSTB LTR MaLR 0 426 3 190 183 49 12 chr3 16042966 16043048 -211481530 + CT-rich Low_complexity Low_complexity 2 86 0 468 265 15 22 chr3 16043331 16043467 -211481111 - L2 LINE L2 0 3272 3138 471 345 113 14 chr3 16044004 16044279 -211480299 + L1ME LINE L1 5517 5818 -303 290 250 217 0 chr3 16044299 16044391 -211480187 - MIR3 SINE MIR -8 200 89 668 213 45 93 chr3 16044677 16044894 -211479684 - MER113 DNA MER1_type? -191 330 104 1786 123 77 0 chr3 16044894 16045154 -211479424 + AluJb SINE Alu 1 280 -32 306 0 0 0 chr3 16045154 16045188 -211479390 + (TAA)n Simple_repeat Simple_repeat 2 35 0 668 213 45 93 chr3 16045188 16045303 -211479275 - MER113 DNA MER1_type? -415 106 13 1143 264 140 5 chr3 16045690 16046354 -211478224 - L2 LINE L2 0 3313 2565 411 296 22 15 chr3 16046671 16046806 -211477772 + L2 LINE L2 3137 3272 0 228 247 0 0 chr3 16046821 16046906 -211477672 + (TGGA)n Simple_repeat Simple_repeat 4 88 0 1362 134 11 22 chr3 16046942 16046969 -211477609 - L1MA9 LINE L1 -17 6161 6135 634 153 9 0 chr3 16046969 16047080 -211477498 - L1MA9 LINE L1 -5 6307 6196 1362 134 11 22 chr3 16047080 16047318 -211477260 - L1MA9 LINE L1 -43 6135 5893 208 328 0 0 chr3 16047769 16047827 -211476751 - MIR SINE MIR -59 149 92 376 246 70 18 chr3 16047844 16047958 -211476620 - L2 LINE L2 -218 3054 2935 218 336 44 26 chr3 16048008 16048121 -211476457 - L2 LINE L2 -468 2846 2732 827 231 99 18 chr3 16048157 16048378 -211476200 + MIR SINE MIR 4 242 -20 206 320 39 39 chr3 16048446 16048549 -211476029 - L2 LINE L2 -606 2708 2606 1036 209 33 9 chr3 16048549 16048759 -211475819 + MER58A DNA MER1_type 8 222 -2 222 227 187 13 chr3 16049538 16049613 -211474965 + MIR SINE MIR 58 145 -117 569 206 44 37 chr3 16049924 16050060 -211474518 - MIR SINE MIR -56 152 16 493 326 62 6 chr3 16050363 16050541 -211474037 + MIR SINE MIR 15 202 -60 201 286 18 0 chr3 16050594 16050650 -211473928 + C-rich Low_complexity Low_complexity 5 61 0 670 261 22 6 chr3 16051024 16051204 -211473374 + MIR SINE MIR 5 187 -75 23 33 0 0 chr3 16051204 16051234 -211473344 + AT_rich Low_complexity Low_complexity 1 30 0 254 229 31 0 chr3 16051266 16051362 -211473216 + (TA)n Simple_repeat Simple_repeat 2 100 0 281 172 40 17 chr3 16051381 16051555 -211473023 + (TA)n Simple_repeat Simple_repeat 2 179 0 303 166 61 31 chr3 16051572 16051735 -211472843 + (TA)n Simple_repeat Simple_repeat 2 169 0 * 334 166 39 72 chr3 16051642 16051823 -211472755 + (TTATA)n Simple_repeat Simple_repeat 4 178 0 217 193 45 45 chr3 16051756 16051932 -211472646 + (TTA)n Simple_repeat Simple_repeat 3 178 0 * 341 195 27 60 chr3 16051878 16051990 -211472588 + (TATAA)n Simple_repeat Simple_repeat 2 107 -73 211 71 48 0 chr3 16051990 16052032 -211472546 + (TTATA)n Simple_repeat Simple_repeat 5 48 0 341 195 27 60 chr3 16052032 16052104 -211472474 + (TATAA)n Simple_repeat Simple_repeat 107 180 0 192 268 109 36 chr3 16053382 16053520 -211471058 + MIR SINE MIR 40 187 -75 219 88 0 0 chr3 16053568 16053602 -211470976 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 807 284 126 25 chr3 16053627 16054138 -211470440 - L2 LINE L2 -58 3255 2677 336 189 0 0 chr3 16054565 16054639 -211469939 + GA-rich Low_complexity Low_complexity 1 74 0 899 199 58 6 chr3 16055237 16055408 -211469170 + MER5A DNA MER1_type 1 180 -9 501 275 14 7 chr3 16055439 16055577 -211469001 + MIR SINE MIR 11 149 -113 537 44 0 0 chr3 16055651 16055719 -211468859 + (ATG)n Simple_repeat Simple_repeat 1 68 0 807 271 152 27 chr3 16055904 16056306 -211468272 - L2 LINE L2 -1 3312 2861 193 304 240 0 chr3 16056321 16056446 -211468132 + MIR SINE MIR 97 251 -11 559 288 6 6 chr3 16056970 16057130 -211467448 + MIR SINE MIR 103 262 0 211 381 82 17 chr3 16057391 16057622 -211466956 + L2 LINE L2 3026 3271 -1 3233 236 53 52 chr3 16058298 16059006 -211465572 - L1MC4 LINE L1 -161 7881 7170 1842 139 10 33 chr3 16059006 16059307 -211465271 - AluJo SINE Alu -18 294 1 3233 236 53 52 chr3 16059307 16059620 -211464958 - L1MC4 LINE L1 -872 7170 6859 348 244 168 8 chr3 16059726 16059845 -211464733 + MIR SINE MIR 10 147 -115 358 64 0 0 chr3 16060098 16060145 -211464433 - L1PA5 LINE L1 -408 5746 5700 3301 36 0 0 chr3 16060145 16060532 -211464046 + L1PA5 LINE L1 5759 6147 -7 230 299 41 52 chr3 16060785 16060882 -211463696 + L2 LINE L2 3161 3256 -16 493 326 62 6 chr3 16061529 16061707 -211462871 - MIR SINE MIR -60 202 15 569 206 44 37 chr3 16062010 16062146 -211462432 + MIR SINE MIR 16 152 -56 222 227 187 13 chr3 16062457 16062532 -211462046 - MIR SINE MIR -117 145 58 1036 209 33 9 chr3 16063311 16063521 -211461057 - MER58A DNA MER1_type -2 222 8 206 320 39 39 chr3 16063521 16063624 -211460954 + L2 LINE L2 2606 2708 -606 827 231 99 18 chr3 16063692 16063913 -211460665 - MIR SINE MIR -20 242 4 218 336 44 26 chr3 16063949 16064062 -211460516 + L2 LINE L2 2732 2846 -468 376 246 70 18 chr3 16064112 16064226 -211460352 + L2 LINE L2 2935 3054 -218 208 328 0 0 chr3 16064243 16064301 -211460277 + MIR SINE MIR 92 149 -59 1362 133 12 23 chr3 16064752 16064990 -211459588 + L1MA9 LINE L1 5893 6281 -31 634 153 9 0 chr3 16064990 16065101 -211459477 + L1MA9 LINE L1 6196 6307 -5 1362 133 12 23 chr3 16065101 16065128 -211459450 + L1MA9 LINE L1 6281 6307 -5 228 247 0 0 chr3 16065164 16065249 -211459329 + (TCCA)n Simple_repeat Simple_repeat 4 88 0 411 296 22 15 chr3 16065264 16065399 -211459179 - L2 LINE L2 0 3272 3137 1143 264 140 5 chr3 16065716 16066380 -211458198 + L2 LINE L2 2565 3313 0 668 213 45 93 chr3 16066767 16066882 -211457696 + MER113 DNA MER1_type? 13 132 -389 306 0 0 0 chr3 16066882 16066916 -211457662 + (TTA)n Simple_repeat Simple_repeat 2 35 0 1786 123 77 0 chr3 16066916 16067176 -211457402 - AluJb SINE Alu -32 280 1 668 213 45 93 chr3 16067176 16067393 -211457185 + MER113 DNA MER1_type? 130 330 -191 290 250 217 0 chr3 16067679 16067771 -211456807 + MIR3 SINE MIR 89 200 -8 471 345 113 14 chr3 16067791 16068066 -211456512 - L1ME LINE L1 -303 5818 5517 468 265 15 22 chr3 16068601 16068737 -211455841 + L2 LINE L2 3138 3272 0 190 183 49 12 chr3 16069020 16069102 -211455476 + GA-rich Low_complexity Low_complexity 2 86 0 2557 180 5 0 chr3 16069840 16070262 -211454316 + MSTB LTR MaLR 3 426 0 640 253 110 0 chr3 16071278 16071432 -211453146 + MER5B DNA MER1_type 2 172 -6 375 250 30 0 chr3 16072143 16072243 -211452335 + MER5A DNA MER1_type 4 106 -83 334 297 70 14 chr3 16072753 16072933 -211451645 - MIR SINE MIR -6 256 12 426 221 55 19 chr3 16073053 16073181 -211451397 - MIR SINE MIR -62 146 60 982 166 13 0 chr3 16073635 16073792 -211450786 - FRAM SINE Alu -6 160 2 480 229 49 33 chr3 16074235 16074357 -211450221 - L2 LINE L2 -2 3270 3147 314 200 104 43 chr3 16074599 16074714 -211449864 - L1ME2 LINE L1 -2 6162 6041 421 301 68 11 chr3 16074719 16074983 -211449595 + MIR SINE MIR 8 243 -19 269 182 0 18 chr3 16074993 16075048 -211449530 - MER5B DNA MER1_type -6 172 119 266 179 291 0 chr3 16075091 16075209 -211449369 + MIR SINE MIR 23 182 -80 313 345 17 11 chr3 16075572 16075746 -211448832 - MER117 DNA MER1_type -17 180 6 677 306 23 31 chr3 16075924 16076185 -211448393 + MIR SINE MIR 2 260 -2 403 242 105 17 chr3 16077229 16077358 -211447220 + MIR SINE MIR 22 146 -62 426 280 63 21 chr3 16077408 16077597 -211446981 + MER117 DNA MER1_type 1 197 0 192 224 0 0 chr3 16077728 16077795 -211446783 + T-rich Low_complexity Low_complexity 1 67 0 215 224 35 138 chr3 16078066 16078182 -211446396 + MIR3 SINE MIR 58 161 -47 241 198 139 0 chr3 16078608 16078694 -211445884 + MIR SINE MIR 40 137 -71 397 322 82 28 chr3 16078917 16079172 -211445406 + L2 LINE L2 2836 3104 -168 419 271 16 25 chr3 16080468 16080590 -211443988 - Charlie8 DNA MER1_type -2194 223 103 1822 217 73 2 chr3 16081022 16081473 -211443105 - LTR16C LTR ERVL -8 483 1 203 299 31 52 chr3 16081561 16081658 -211442920 + MER5A DNA MER1_type 82 176 -13 285 305 49 0 chr3 16082248 16082330 -211442248 - L2 LINE L2 -16 3256 3171 609 204 32 81 chr3 16082722 16082908 -211441670 - MER5B DNA MER1_type -1 177 1 462 146 173 0 chr3 16082938 16083048 -211441530 - MER103 DNA DNA -36 130 2 1181 262 19 22 chr3 16083314 16083627 -211440951 + MLT1I LTR MaLR 98 409 0 625 215 98 0 chr3 16085100 16085263 -211439315 + L1ME3A LINE L1 5257 5435 -729 * 678 230 86 86 chr3 16085260 16085564 -211439014 + L1ME3A LINE L1 5859 6162 -8 186 252 72 27 chr3 16085943 16086054 -211438524 - MIR SINE MIR -120 142 27 300 321 28 18 chr3 16086678 16086787 -211437791 + MIR3 SINE MIR 83 192 -16 216 277 46 15 chr3 16086987 16087052 -211437526 - MER5B DNA MER1_type -111 67 1 220 274 81 0 chr3 16087095 16087157 -211437421 + MIR SINE MIR 84 150 -112 206 289 0 0 chr3 16088307 16088352 -211436226 - MIR SINE MIR -12 250 206 695 216 226 19 chr3 16088373 16088581 -211435997 + MIR SINE MIR 1 251 -11 586 253 81 75 chr3 16088633 16089043 -211435535 - MLT1J2 LTR MaLR 0 450 2 264 257 57 24 chr3 16089046 16089153 -211435425 - MIR SINE MIR -64 144 34 623 265 100 22 chr3 16089598 16089828 -211434750 - LTR16C LTR ERVL 0 491 244 488 287 91 48 chr3 16090787 16091017 -211433561 + MIR SINE MIR 21 260 -2 2519 43 0 0 chr3 16092356 16092655 -211431923 - AluY SINE Alu -12 299 1 439 226 146 33 chr3 16093396 16093608 -211430970 + MIR SINE MIR 8 243 -19 1710 175 78 27 chr3 16093841 16094212 -211430366 - MLT1B LTR MaLR 0 390 1 208 341 126 35 chr3 16095419 16095958 -211428620 + L2 LINE L2 2149 2736 -578 1219 266 119 7 chr3 16096013 16096475 -211428103 - LTR33 LTR ERVL -7 514 1 271 301 153 68 chr3 16096635 16096871 -211427707 + L2 LINE L2 2997 3252 -20 192 262 0 24 chr3 16096839 16096881 -211427697 + MIR SINE MIR 217 257 -5 * 1276 146 87 80 chr3 16097928 16098216 -211426362 + AluJo SINE Alu 1 290 -22 181 214 0 43 chr3 16099571 16099641 -211424937 + GA-rich Low_complexity Low_complexity 2 68 0 1354 231 77 39 chr3 16100583 16101090 -211423488 + L1ME3 LINE L1 3567 4092 -2054 7922 213 67 41 chr3 16101185 16104205 -211420373 + L1ME1 LINE L1 2750 5845 -321 498 196 68 42 chr3 16104213 16104387 -211420191 + L1MA10 LINE L1 5990 6332 -2 2686 270 62 26 chr3 16104445 16105360 -211419218 + L1ME3 LINE L1 4321 5202 -960 180 0 0 0 chr3 16105360 16105380 -211419198 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2425 34 0 59 chr3 16105386 16105706 -211418872 - AluY SINE Alu -10 301 1 2686 270 62 26 chr3 16105706 16105730 -211418848 + L1ME3 LINE L1 5206 5228 -934 1635 78 0 5 chr3 16105730 16105949 -211418629 + AluY SINE Alu 76 293 -18 2686 270 62 26 chr3 16105949 16106777 -211417801 + L1ME3 LINE L1 5228 6162 0 331 294 18 18 chr3 16106835 16106998 -211417580 - L2 LINE L2 -190 3082 2920 417 264 129 18 chr3 16107009 16107172 -211417406 - MER63A DNA MER1_type 0 210 30 850 213 112 0 chr3 16107386 16107583 -211416995 + MER58A DNA MER1_type 6 224 0 269 211 147 21 chr3 16107850 16107945 -211416633 - LTR16A LTR ERVL 0 450 344 307 291 92 21 chr3 16108051 16108192 -211416386 - LTR16A LTR ERVL -284 166 16 278 270 34 22 chr3 16108402 16108491 -211416087 - MIR SINE MIR -117 145 56 458 296 86 7 chr3 16108675 16108827 -211415751 - MIR SINE MIR -17 245 82 639 270 75 4 chr3 16109243 16109469 -211415109 + MIR SINE MIR 15 256 -6 692 324 36 12 chr3 16109660 16109910 -211414668 + MIR SINE MIR 6 261 -1 236 369 0 45 chr3 16110070 16110181 -211414397 - L2 LINE L2 -65 3207 3102 535 325 0 6 chr3 16110181 16110338 -211414240 - MIR SINE MIR -58 204 49 290 242 16 0 chr3 16110603 16110665 -211413913 - MLT1K LTR MaLR -339 249 187 600 279 130 22 chr3 16110764 16111040 -211413538 + L2 LINE L2 3008 3313 0 5437 190 17 13 chr3 16111044 16112339 -211412239 + L1MA10 LINE L1 4866 6175 -159 5838 132 2 1 chr3 16112339 16113483 -211411095 + L1PA15 LINE L1 5025 6165 0 5437 190 17 13 chr3 16113483 16113644 -211410934 + L1MA10 LINE L1 6175 6334 0 310 344 55 8 chr3 16113852 16113980 -211410598 + L2 LINE L2 3137 3270 -2 743 199 160 0 chr3 16114007 16114163 -211410415 - MER5A DNA MER1_type -6 183 3 274 301 24 0 chr3 16114258 16114341 -211410237 + MIR SINE MIR 35 119 -89 321 68 0 0 chr3 16114368 16114412 -211410166 + (CCCTG)n Simple_repeat Simple_repeat 2 45 0 189 243 29 43 chr3 16114830 16114900 -211409678 - MIR SINE MIR 0 262 194 331 168 103 58 chr3 16114958 16115082 -211409496 - MER113 DNA MER1_type? -289 232 98 3637 163 31 55 chr3 16115082 16115867 -211408711 + L1MB8 LINE L1 5413 6178 0 331 168 103 58 chr3 16115867 16115897 -211408681 - MER113 DNA MER1_type? -423 98 71 8573 133 37 37 chr3 16115906 16116054 -211408524 - Ricksha DNA DNA -7 3239 3092 2228 94 0 3 chr3 16116054 16116361 -211408217 + AluY SINE Alu 1 306 -5 8573 133 37 37 chr3 16116361 16117441 -211407137 - Ricksha DNA DNA -154 3092 2009 2539 7 0 0 chr3 16117441 16117758 -211406820 - AluY SINE Alu 0 317 1 8573 133 37 37 chr3 16117758 16118078 -211406500 - Ricksha DNA DNA -1237 2009 1690 306 186 34 0 chr3 16118072 16118131 -211406447 - ERVL LTR ERVL -61 5703 5643 * 817 170 20 0 chr3 16118116 16118269 -211406309 - Ricksha_a DNA DNA -1025 156 1 21 0 0 0 chr3 16118285 16118306 -211406272 + AT_rich Low_complexity Low_complexity 1 21 0 1826 102 48 31 chr3 16118311 16118605 -211405973 + AluY SINE Alu 1 299 -12 451 289 108 0 chr3 16118655 16118821 -211405757 - MIR SINE MIR -77 185 2 295 227 11 141 chr3 16119078 16119203 -211405375 + MLT1J2 LTR MaLR 1 97 -350 2529 182 124 8 chr3 16119203 16119687 -211404891 + MLT1F LTR MaLR 2 541 -1 295 227 11 141 chr3 16119687 16119746 -211404832 + MLT1J2 LTR MaLR 97 162 -285 3201 142 8 8 chr3 16119794 16120303 -211404275 + L1MB3 LINE L1 5673 6181 -2 351 185 49 12 chr3 16120458 16120539 -211404039 - MLT1J LTR MaLR 0 511 428 512 299 87 29 chr3 16120555 16120796 -211403782 - MLT1J LTR MaLR -52 459 205 588 243 53 34 chr3 16120884 16121090 -211403488 + MLT1J1 LTR MaLR 237 446 0 366 294 106 25 chr3 16121153 16121313 -211403265 + MIR SINE MIR 20 192 -70 847 176 68 50 chr3 16121982 16122018 -211402560 - MER33 DNA MER1_type -2272 313 279 1977 175 48 16 chr3 16122018 16122389 -211402189 - MLT1B LTR MaLR -4 386 4 847 176 68 50 chr3 16122389 16122630 -211401948 - MER33 DNA MER1_type -2306 279 31 370 336 141 37 chr3 16122638 16122873 -211401705 + L2 LINE L2 2890 3170 -102 445 44 0 44 chr3 16122873 16122941 -211401637 - L1PA2 LINE L1 0 6155 6091 370 336 141 37 chr3 16122941 16123032 -211401546 + L2 LINE L2 3170 3250 -22 525 16 0 0 chr3 16123123 16123185 -211401393 + (TG)n Simple_repeat Simple_repeat 1 62 0 257 309 117 0 chr3 16123494 16123588 -211400990 + MER91C DNA MER1_type 36 140 0 716 128 0 28 chr3 16123878 16123987 -211400591 - AluJb SINE Alu -205 107 2 378 228 195 0 chr3 16124173 16124290 -211400288 + MIR SINE MIR 38 175 -68 255 248 205 26 chr3 16124342 16124459 -211400119 - MLT1I LTR MaLR 0 409 272 438 226 184 42 chr3 16125527 16125695 -211398883 - MLT1H LTR MaLR -355 194 3 342 306 122 58 chr3 16126122 16126517 -211398061 + L2 LINE L2 2448 2867 -447 448 270 68 27 chr3 16126700 16126848 -211397730 + MER63A DNA MER1_type 57 210 0 1057 105 0 0 chr3 16126923 16127056 -211397522 + AluSq/x SINE Alu 1 133 -180 799 270 85 0 chr3 16127250 16127461 -211397117 - MIR SINE MIR -32 230 2 226 382 15 23 chr3 16127873 16128004 -211396574 - MIR SINE MIR -63 145 16 2576 61 0 0 chr3 16128189 16128484 -211396094 - AluY SINE Alu -16 295 1 994 179 0 71 chr3 16128786 16129010 -211395568 - AluJo SINE Alu -13 299 92 2393 110 0 0 chr3 16129083 16129392 -211395186 + AluSx SINE Alu 1 309 -3 319 309 62 62 chr3 16129393 16129603 -211394975 - MIR SINE MIR -38 224 15 345 335 44 46 chr3 16129622 16130055 -211394523 - L2 LINE L2 -1172 2142 1711 222 224 0 20 chr3 16130287 16130336 -211394242 + CT-rich Low_complexity Low_complexity 4 51 0 318 308 0 33 chr3 16130340 16130431 -211394147 - L2 LINE L2 -13 3259 3172 394 297 43 49 chr3 16130503 16130688 -211393890 - MIR SINE MIR 0 262 79 394 263 178 13 chr3 16130826 16130978 -211393600 + MER5A DNA MER1_type 7 183 -6 26 30 0 0 chr3 16131489 16131522 -211393056 + GC_rich Low_complexity Low_complexity 1 33 0 344 264 157 14 chr3 16132052 16132192 -211392386 - MIR SINE MIR -12 250 91 25 0 0 0 chr3 16133203 16133228 -211391350 + AT_rich Low_complexity Low_complexity 1 25 0 245 251 28 70 chr3 16134315 16134434 -211390144 - MIR SINE MIR -56 206 95 595 314 44 20 chr3 16135444 16135696 -211388882 + MER102a DNA MER1_type 63 320 -10 441 331 7 0 chr3 16135849 16135994 -211388584 - MER117 DNA MER1_type -47 150 5 23 0 0 0 chr3 16136802 16136825 -211387753 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 16136892 16136914 -211387664 + AT_rich Low_complexity Low_complexity 1 22 0 203 313 30 10 chr3 16137358 16137457 -211387121 - L2 LINE L2 -24 3248 3148 204 311 19 47 chr3 16137615 16137721 -211386857 + MIR3 SINE MIR 100 202 -6 205 282 65 73 chr3 16137922 16138046 -211386532 - MIR SINE MIR -55 207 85 451 283 186 20 chr3 16138866 16139113 -211385465 + L3 LINE CR1 1204 1491 -86 516 291 102 0 chr3 16139213 16139340 -211385238 - MER91C DNA MER1_type 0 140 1 263 371 41 0 chr3 16139357 16139454 -211385124 + L3 LINE CR1 1462 1562 -15 672 275 121 46 chr3 16139677 16140033 -211384545 - L1ME3A LINE L1 -223 5947 5619 2322 95 14 3 chr3 16140033 16140329 -211384249 + AluSx SINE Alu 1 299 -13 672 275 121 46 chr3 16140329 16140620 -211383958 - L1ME3A LINE L1 -551 5619 5258 1291 247 119 43 chr3 16140621 16141318 -211383260 - L1ME3A LINE L1 -920 5226 4477 235 207 329 0 chr3 16141325 16141407 -211383171 + MER5A DNA MER1_type 2 110 -79 247 224 30 0 chr3 16142329 16142396 -211382182 - MER103 DNA DNA -95 71 3 204 326 92 31 chr3 16142528 16142626 -211381952 - L3 LINE CR1 -260 1317 1214 223 341 40 40 chr3 16143398 16143524 -211381054 - L2 LINE L2 -5 3308 3183 1001 259 101 36 chr3 16143644 16144091 -211380487 + L2 LINE L2 2828 3303 -10 207 114 0 0 chr3 16144091 16144126 -211380452 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 238 270 20 90 chr3 16144127 16144227 -211380351 + MIR SINE MIR 100 192 -70 274 231 0 99 chr3 16144301 16144392 -211380186 + MIR SINE MIR 120 201 -61 371 288 130 33 chr3 16144734 16144918 -211379660 + MIR SINE MIR 61 262 0 352 331 97 23 chr3 16145252 16145427 -211379151 - L2 LINE L2 -166 3106 2919 877 284 174 3 chr3 16145527 16145918 -211378660 - L2 LINE L2 0 3313 2856 453 314 222 33 chr3 16146351 16146873 -211377705 + L1MC4a LINE L1 5574 6194 -1614 219 250 0 0 chr3 16147151 16147211 -211377367 + (TTTA)n Simple_repeat Simple_repeat 1 60 0 2371 111 0 0 chr3 16148195 16148493 -211376085 - AluSq SINE Alu -15 298 1 396 276 73 16 chr3 16148743 16148866 -211375712 + MIR SINE MIR 21 150 -112 275 296 46 83 chr3 16149121 16149337 -211375241 - MIR SINE MIR -15 247 40 218 261 153 36 chr3 16149838 16149949 -211374629 + MIR SINE MIR 38 161 -101 363 238 67 28 chr3 16150741 16150872 -211373706 + MIR3 SINE MIR 5 143 -77 3479 179 68 3 chr3 16150998 16151720 -211372858 - L1MB7 LINE L1 0 6184 5416 401 273 30 8 chr3 16151737 16151869 -211372709 + MER103 DNA DNA 14 148 -18 1030 224 47 0 chr3 16151940 16152154 -211372424 + MER58A DNA MER1_type 1 224 0 322 302 57 0 chr3 16152636 16152742 -211371836 + MIR SINE MIR 92 203 -59 211 241 74 0 chr3 16152799 16152853 -211371725 + L2 LINE L2 3147 3204 -68 351 272 87 3 chr3 16153564 16153597 -211370981 + MIR SINE MIR 40 69 -185 2082 139 0 3 chr3 16153597 16153884 -211370694 + AluSx SINE Alu 1 286 -26 351 272 87 3 chr3 16153884 16153993 -211370585 + MIR SINE MIR 69 191 -63 204 292 15 15 chr3 16155630 16155695 -211368883 + L2 LINE L2 3245 3309 -4 755 292 5 0 chr3 16155843 16156035 -211368543 + MIR SINE MIR 16 208 -54 543 209 27 0 chr3 16156041 16156151 -211368427 - MIR SINE MIR -98 164 52 240 235 0 0 chr3 16156223 16156274 -211368304 + L2 LINE L2 3263 3313 0 291 140 0 0 chr3 16156931 16156981 -211367597 + (TG)n Simple_repeat Simple_repeat 1 50 0 325 344 13 33 chr3 16157427 16157578 -211367000 - MER5A DNA MER1_type -2 187 40 306 309 43 11 chr3 16157779 16157873 -211366705 + L2 LINE L2 3168 3264 -8 373 270 116 37 chr3 16158463 16158678 -211365900 + L2 LINE L2 2827 3058 -214 550 263 127 51 chr3 16158678 16158994 -211365584 - MLT1I LTR MaLR 0 409 70 216 308 106 71 chr3 16159584 16159782 -211364796 + MIR SINE MIR 17 221 -41 271 251 68 13 chr3 16159997 16160128 -211364450 - MLT1J LTR MaLR -233 213 70 599 198 88 44 chr3 16160262 16160444 -211364134 + Charlie8 DNA MER1_type 76 265 -2152 651 254 25 51 chr3 16161058 16161295 -211363283 + MIR SINE MIR 33 260 -2 594 285 20 0 chr3 16162186 16162337 -211362241 - MIR SINE MIR -52 210 57 211 147 0 0 chr3 16162461 16162495 -211362083 + L2 LINE L2 3269 3302 -11 624 299 6 18 chr3 16162632 16162796 -211361782 - MIR3 SINE MIR -19 189 28 216 333 15 0 chr3 16163674 16163740 -211360838 + L2 LINE L2 3206 3272 0 392 335 102 0 chr3 16163935 16164111 -211360467 - MIR3 SINE MIR 0 208 15 288 53 0 0 chr3 16164927 16164965 -211359613 + (A)n Simple_repeat Simple_repeat 1 38 0 910 279 0 14 chr3 16165021 16165243 -211359335 + MER58A DNA MER1_type 1 219 -5 21 0 0 0 chr3 16165251 16165272 -211359306 + AT_rich Low_complexity Low_complexity 1 21 0 310 252 189 42 chr3 16165490 16165633 -211358945 - L2 LINE L2 0 3313 3150 264 319 150 13 chr3 16165781 16166007 -211358571 - L2 LINE L2 -430 2884 2628 442 191 106 0 chr3 16166739 16166833 -211357745 - MIR SINE MIR -36 226 123 349 209 132 78 chr3 16168066 16168195 -211356383 + MIR3 SINE MIR 2 137 -71 892 260 78 9 chr3 16168649 16168995 -211355583 - MLT2C1 LTR ERVL -27 370 1 2346 87 0 3 chr3 16169252 16169540 -211355038 + AluSq SINE Alu 15 301 -12 265 260 81 94 chr3 16169657 16169880 -211354698 + L1MC4a LINE L1 5700 5919 -1889 235 0 0 0 chr3 16170114 16170140 -211354438 + (TTA)n Simple_repeat Simple_repeat 2 180 0 1725 148 42 0 chr3 16170140 16170404 -211354174 - AluSx SINE Alu -26 286 12 1449 185 43 26 chr3 16170419 16170722 -211353856 - AluJo SINE Alu -4 308 1 189 175 0 0 chr3 16170826 16170866 -211353712 + G-rich Low_complexity Low_complexity 4 43 0 1699 248 42 10 chr3 16171693 16172101 -211352477 + LTR16C LTR ERVL 64 484 -7 388 275 56 14 chr3 16172413 16172555 -211352023 + MIR SINE MIR 81 228 -34 1042 281 121 23 chr3 16172563 16172993 -211351585 + MLT1K LTR MaLR 104 575 -13 269 246 0 15 chr3 16173339 16173404 -211351174 - LTR16C LTR ERVL -136 355 292 272 184 123 105 chr3 16173525 16173639 -211350939 - MIR SINE MIR -72 136 21 1531 239 47 32 chr3 16173685 16174178 -211350400 + MER113 DNA MER1_type? 22 521 0 448 247 161 25 chr3 16174186 16174348 -211350230 - MER5A DNA MER1_type 0 189 6 907 233 51 19 chr3 16174357 16174572 -211350006 + MER58A DNA MER1_type 1 222 -2 261 164 36 0 chr3 16175049 16175104 -211349474 + L1ME3 LINE L1 5589 5645 -517 1677 257 63 20 chr3 16175191 16175681 -211348897 + L1ME3 LINE L1 5652 6162 0 183 222 42 56 chr3 16176056 16176128 -211348450 - MIR SINE MIR -135 127 57 324 188 0 0 chr3 16176134 16176203 -211348375 + CT-rich Low_complexity Low_complexity 3 71 0 738 193 0 15 chr3 16176217 16176352 -211348226 - FLAM_C SINE Alu 0 133 1 820 205 140 9 chr3 16176477 16176706 -211347872 + MIR SINE MIR 1 259 -3 199 308 42 50 chr3 16176797 16176917 -211347661 - MIR SINE MIR -107 155 37 * 360 261 118 25 chr3 16176856 16176951 -211347627 + MIR SINE MIR 13 98 -160 724 113 0 0 chr3 16176951 16177057 -211347521 - L1PA5 LINE L1 -3 6151 6046 360 261 118 25 chr3 16177057 16177136 -211347442 + MIR SINE MIR 98 197 -61 2102 119 0 0 chr3 16177687 16177981 -211346597 + AluSx SINE Alu 1 294 -18 475 259 98 52 chr3 16177998 16178191 -211346387 - L2 LINE L2 -218 3054 2853 214 365 21 10 chr3 16178389 16178485 -211346093 - L2 LINE L2 -216 3056 2960 486 259 177 0 chr3 16178501 16178648 -211345930 - MIR SINE MIR -3 259 87 303 259 33 50 chr3 16179347 16179495 -211345083 + MIR SINE MIR 1 140 -68 468 285 89 6 chr3 16179526 16179684 -211344894 + MIR3 SINE MIR 38 208 0 207 261 29 72 chr3 16179730 16179799 -211344779 - L2 LINE L2 0 3272 3207 * 253 314 91 45 chr3 16179794 16180036 -211344542 + L2 LINE L2 2585 2837 -477 298 152 0 0 chr3 16180071 16180117 -211344461 + L2 LINE L2 3267 3312 -1 1326 204 93 18 chr3 16180150 16180538 -211344040 + MER113 DNA MER1_type? 9 425 -96 871 251 173 15 chr3 16181194 16181605 -211342973 - MLT1K LTR MaLR 0 476 1 825 275 26 70 chr3 16181731 16182044 -211342534 + L2 LINE L2 2962 3260 -12 1663 240 29 44 chr3 16183222 16183988 -211340590 - L1M4c LINE L1 -4586 2373 1281 2447 71 0 0 chr3 16183988 16184299 -211340279 - AluY SINE Alu 0 311 1 1663 240 29 44 chr3 16184299 16184351 -211340227 - L1M4c LINE L1 -5678 1281 1230 1552 279 23 17 chr3 16184422 16184903 -211339675 - L1M4c LINE L1 -5771 1088 605 408 345 47 29 chr3 16184966 16185241 -211339337 - L1M4c LINE L1 -6283 576 297 4820 82 18 86 chr3 16185387 16186405 -211338173 - L1P LINE L1 -829 5317 4369 * 8267 43 0 1 chr3 16186404 16187401 -211337177 - L1P LINE L1 -1163 4983 3988 2059 113 7 0 chr3 16188349 16188642 -211335936 + AluSx SINE Alu 5 299 -13 2161 115 0 0 chr3 16188941 16189245 -211335333 + AluSx SINE Alu 1 304 -8 436 298 115 34 chr3 16189249 16189484 -211335094 + MIR SINE MIR 9 262 0 1013 206 123 83 chr3 16189990 16190340 -211334238 - MLT1A1 LTR MaLR -1 364 1 30 27 0 0 chr3 16192162 16192199 -211332379 + AT_rich Low_complexity Low_complexity 1 37 0 2998 134 0 7 chr3 16192286 16192726 -211331852 - LTR9B LTR ERV1 0 644 208 556 261 60 10 chr3 16192926 16193125 -211331453 + L1ME LINE L1 5313 5521 -645 * 30857 46 2 3 chr3 16193094 16197469 -211327109 + L1PA3 LINE L1 1524 5892 -263 845 255 60 12 chr3 16198677 16199096 -211325482 - L1MEc LINE L1 -2869 3346 2908 1683 179 188 8 chr3 16199352 16199709 -211324869 + MSTC LTR MaLR 8 428 0 743 278 163 18 chr3 16199713 16199763 -211324815 + MLT1E1 LTR MaLR 89 130 -463 3152 86 32 5 chr3 16199763 16199800 -211324778 - MLT2A1 LTR ERVL 0 444 410 333 0 0 0 chr3 16199800 16199837 -211324741 + (CA)n Simple_repeat Simple_repeat 2 38 0 3152 86 32 5 chr3 16199837 16200231 -211324347 - MLT2A1 LTR ERVL -34 410 1 743 278 163 18 chr3 16200231 16200457 -211324121 + MLT1E1 LTR MaLR 130 405 -188 795 257 6 6 chr3 16200581 16200760 -211323818 + MLT1E1 LTR MaLR 476 654 0 361 280 36 44 chr3 16200778 16201028 -211323550 - L1MEc LINE L1 -3744 2471 2224 412 311 154 26 chr3 16201061 16201334 -211323244 - L1MEc LINE L1 -4214 2182 1875 2260 92 0 3 chr3 16201629 16201935 -211322643 - AluY SINE Alu -6 305 1 254 231 31 0 chr3 16202083 16202148 -211322430 - L1MEc LINE L1 -5016 1380 1314 2113 102 3 0 chr3 16202314 16202655 -211321923 + AluSq SINE Alu 2 313 0 3254 116 53 2 chr3 16202822 16203312 -211321266 + L1PB4 LINE L1 5536 6050 -106 2203 86 3 3 chr3 16203313 16203605 -211320973 + AluSg SINE Alu 2 293 -17 494 305 102 5 chr3 16205271 16205458 -211319120 - MIR SINE MIR -21 241 37 2004 132 51 25 chr3 16205799 16206154 -211318424 - THE1B LTR MaLR 0 364 1 367 188 75 25 chr3 16206986 16207066 -211317512 + MER117 DNA MER1_type 112 195 -2 239 286 36 57 chr3 16207081 16207221 -211317357 - MIR3 SINE MIR -61 147 11 504 227 71 32 chr3 16207298 16207452 -211317126 - L2 LINE L2 -13 3300 3141 444 249 69 52 chr3 16207843 16208016 -211316562 + MER20B DNA MER1_type 1 176 -607 330 80 0 0 chr3 16209021 16209071 -211315507 + (TG)n Simple_repeat Simple_repeat 1 50 0 488 319 14 7 chr3 16209524 16209662 -211314916 - MIR3 SINE MIR -62 146 8 460 269 81 50 chr3 16209843 16210003 -211314575 + MIR SINE MIR 92 256 -6 427 313 0 21 chr3 16210433 16210577 -211314001 + L2 LINE L2 3160 3300 -13 290 231 209 22 chr3 16211760 16211894 -211312684 + MIR SINE MIR 34 192 -70 680 236 93 0 chr3 16212940 16213101 -211311477 - MIR SINE MIR -66 196 21 216 204 0 0 chr3 16213116 16213160 -211311418 + L2 LINE L2 3208 3251 -21 305 312 75 27 chr3 16213754 16213940 -211310638 - MIR SINE MIR -35 227 33 448 285 23 41 chr3 16214692 16214864 -211309714 + MIR3 SINE MIR 9 177 -31 498 271 7 21 chr3 16215360 16215500 -211309078 - MIR SINE MIR -124 138 1 265 86 0 0 chr3 16215685 16215720 -211308858 + MIR SINE MIR 117 151 -111 219 171 24 0 chr3 16216877 16216918 -211307660 - MIR SINE MIR -78 130 89 532 288 86 58 chr3 16217219 16217462 -211307116 - MIR SINE MIR 0 262 13 750 167 16 0 chr3 16217596 16217722 -211306856 - AluJb SINE Alu -84 228 101 573 281 65 23 chr3 16217906 16218123 -211306455 - MIR SINE MIR -17 245 20 2317 169 141 13 chr3 16218136 16218597 -211305981 - MLT2B1 LTR ERVL 0 520 1 455 265 163 33 chr3 16219668 16219883 -211304695 - MIR SINE MIR -13 249 7 456 284 58 26 chr3 16220282 16220437 -211304141 + MIR SINE MIR 59 218 -44 393 285 91 0 chr3 16220502 16220648 -211303930 + MIR SINE MIR 36 192 -65 542 243 11 37 chr3 16220928 16221117 -211303461 + L1ME4a LINE L1 5934 6117 -4 296 229 9 64 chr3 16221487 16221596 -211302982 - MIR SINE MIR -44 218 116 * 297 329 41 24 chr3 16221588 16221758 -211302820 + L2 LINE L2 2266 2438 -876 1056 266 154 7 chr3 16221793 16222468 -211302110 - L2 LINE L2 -95 3218 2441 188 314 94 19 chr3 16222491 16222650 -211301928 + L2 LINE L2 2481 2651 -663 456 269 0 22 chr3 16222968 16223102 -211301476 + MIR SINE MIR 23 153 -109 337 242 131 0 chr3 16223220 16223319 -211301259 + MIR SINE MIR 34 145 -117 183 278 0 19 chr3 16223822 16223876 -211300702 + MIR SINE MIR 90 142 -66 6388 109 45 16 chr3 16224505 16225546 -211299032 + MER11C LTR ERVK 1 1071 0 680 262 89 13 chr3 16225616 16225841 -211298737 + MIR SINE MIR 3 244 -18 356 243 117 9 chr3 16227190 16227301 -211297277 + L2 LINE L2 3191 3313 0 583 282 119 36 chr3 16227500 16227911 -211296667 - L1ME LINE L1 -303 5818 5374 217 363 8 32 chr3 16228038 16228162 -211296416 + MIR SINE MIR 19 139 -69 284 333 12 0 chr3 16228239 16228320 -211296258 + L2 LINE L2 3187 3268 -4 721 259 60 5 chr3 16228427 16228628 -211295950 - MIR SINE MIR -1 261 50 648 286 24 14 chr3 16229194 16229404 -211295174 - MIR SINE MIR -45 217 6 226 306 71 20 chr3 16229415 16229513 -211295065 + L2 LINE L2 3161 3263 -9 495 297 0 7 chr3 16229581 16229729 -211294849 - MIR SINE MIR -25 237 91 417 306 96 9 chr3 16230184 16230403 -211294175 + L2 LINE L2 2569 2806 -508 246 224 60 15 chr3 16230639 16230706 -211293872 + L2 LINE L2 3200 3269 -3 807 236 96 16 chr3 16231184 16231434 -211293144 + LTR33 LTR ERVL 1 270 -251 292 198 74 33 chr3 16231481 16231531 -211293047 + LTR33 LTR ERVL 394 440 -81 2047 158 18 0 chr3 16231531 16231872 -211292706 - MER7A DNA MER2_type -1 345 1 292 198 74 33 chr3 16231872 16231942 -211292636 + LTR33 LTR ERVL 440 519 -2 459 255 114 0 chr3 16232203 16232334 -211292244 - MIR SINE MIR -80 182 38 415 215 32 0 chr3 16232435 16232528 -211292050 - MIR SINE MIR -10 252 157 330 222 56 0 chr3 16232549 16232639 -211291939 - L1MB2 LINE L1 -1 6170 6076 266 229 0 0 chr3 16232672 16232720 -211291858 - Tigger3(Golem) DNA MER2_type 0 3029 2982 2860 139 18 2 chr3 16232724 16233213 -211291365 - L1MB2 LINE L1 -89 6082 5586 615 248 0 0 chr3 16233213 16233346 -211291232 - MIR SINE MIR -96 166 34 191 298 191 0 chr3 16233346 16233440 -211291138 + MIR SINE MIR 134 245 -17 249 250 58 37 chr3 16233814 16233917 -211290661 - MIR SINE MIR -76 132 39 2165 118 21 0 chr3 16235698 16235987 -211288591 - AluSx SINE Alu -17 295 1 229 233 12 12 chr3 16236150 16236236 -211288342 + (TCCA)n Simple_repeat Simple_repeat 4 89 0 228 163 0 0 chr3 16236354 16236397 -211288181 + (TCCA)n Simple_repeat Simple_repeat 1 43 0 719 191 6 0 chr3 16236417 16236579 -211287999 + (TCCA)n Simple_repeat Simple_repeat 1 163 0 198 143 0 0 chr3 16236609 16236644 -211287934 + (TCCA)n Simple_repeat Simple_repeat 2 36 0 387 232 13 7 chr3 16236679 16236830 -211287748 + (TCCA)n Simple_repeat Simple_repeat 1 152 0 348 302 66 130 chr3 16236856 16237309 -211287269 - L2 LINE L2 0 3272 2849 233 294 19 31 chr3 16237532 16237692 -211286886 - L1M4 LINE L1 -433 5741 5584 384 325 8 0 chr3 16237697 16237823 -211286755 - MIR SINE MIR -102 160 34 216 287 191 0 chr3 16237823 16237917 -211286661 + MIR SINE MIR 134 245 -17 249 250 58 37 chr3 16238291 16238394 -211286184 - MIR SINE MIR -76 132 39 1007 253 83 46 chr3 16240322 16240817 -211283761 + L2 LINE L2 2488 2999 -314 261 0 0 0 chr3 16240830 16240859 -211283719 + (T)n Simple_repeat Simple_repeat 1 29 0 604 315 47 67 chr3 16241279 16241622 -211282956 + L2 LINE L2 2933 3268 -4 245 150 0 0 chr3 16241722 16241762 -211282816 + L2 LINE L2 3230 3269 -3 658 257 124 0 chr3 16242801 16243003 -211281575 - MIR SINE MIR 0 262 36 23 33 0 0 chr3 16244289 16244319 -211280259 + AT_rich Low_complexity Low_complexity 1 30 0 212 276 43 141 chr3 16245079 16245242 -211279336 - MIR SINE MIR -112 150 4 378 263 88 39 chr3 16245428 16245532 -211279046 - MIR SINE MIR -62 146 69 2248 55 42 28 chr3 16245532 16245821 -211278757 + AluY SINE Alu 1 293 -18 378 263 88 39 chr3 16245821 16245890 -211278688 - MIR SINE MIR -139 69 5 249 250 58 37 chr3 16247602 16247705 -211276873 + MIR SINE MIR 39 132 -76 216 287 191 0 chr3 16248079 16248173 -211276405 - MIR SINE MIR -17 245 134 590 256 0 0 chr3 16248173 16248306 -211276272 + MIR SINE MIR 34 166 -96 2798 140 25 2 chr3 16248306 16248792 -211275786 + L1MB2 LINE L1 5586 6082 -89 266 229 0 0 chr3 16248796 16248844 -211275734 + Tigger3(Golem) DNA MER2_type 2981 3028 -1 355 211 56 0 chr3 16248877 16248967 -211275611 + L1MB2 LINE L1 6076 6170 -1 415 215 32 0 chr3 16248988 16249081 -211275497 + MIR SINE MIR 157 252 -10 449 263 114 0 chr3 16249182 16249313 -211275265 + MIR SINE MIR 38 182 -80 292 198 74 33 chr3 16249574 16249644 -211274934 - LTR33 LTR ERVL -2 519 440 2047 158 18 0 chr3 16249644 16249985 -211274593 + MER7A DNA MER2_type 1 345 -1 292 198 74 33 chr3 16249985 16250035 -211274543 - LTR33 LTR ERVL -81 440 394 830 232 96 16 chr3 16250082 16250332 -211274246 - LTR33 LTR ERVL -251 270 1 246 224 60 15 chr3 16250810 16250877 -211273701 - L2 LINE L2 -3 3310 3241 417 306 96 9 chr3 16251113 16251332 -211273246 - L2 LINE L2 -508 2806 2569 495 297 0 7 chr3 16251787 16251935 -211272643 + MIR SINE MIR 91 237 -25 226 306 71 20 chr3 16252003 16252101 -211272477 - L2 LINE L2 -9 3263 3161 648 286 24 14 chr3 16252112 16252322 -211272256 + MIR SINE MIR 6 217 -45 721 259 60 5 chr3 16252888 16253089 -211271489 + MIR SINE MIR 50 261 -1 284 333 12 0 chr3 16253196 16253277 -211271301 - L2 LINE L2 -4 3268 3187 217 363 8 32 chr3 16253354 16253478 -211271100 - MIR SINE MIR -69 139 19 583 282 119 36 chr3 16253605 16254016 -211270562 + L1ME LINE L1 5374 5818 -303 356 243 117 9 chr3 16254215 16254326 -211270252 - L2 LINE L2 0 3313 3191 680 262 89 13 chr3 16255675 16255900 -211268678 - MIR SINE MIR -18 244 3 6492 108 45 17 chr3 16255970 16257012 -211267566 - MER11C LTR ERVK 0 1071 1 327 318 70 16 chr3 16257499 16257757 -211266821 + L2 LINE L2 2376 2647 -667 215 322 35 49 chr3 16257733 16257876 -211266702 + MIR SINE MIR 69 209 -53 * 456 305 32 7 chr3 16258182 16258336 -211266242 - MIR3 SINE MIR -14 194 37 387 304 149 10 chr3 16258679 16258873 -211265705 - L2 LINE L2 -49 3223 3003 2250 91 0 77 chr3 16258881 16259220 -211265358 + AluSq SINE Alu 1 313 0 820 298 147 47 chr3 16259499 16259965 -211264613 - L2 LINE L2 0 3313 2784 411 68 0 0 chr3 16259965 16260024 -211264554 + (GGATG)n Simple_repeat Simple_repeat 2 60 0 820 298 147 47 chr3 16260024 16260135 -211264443 - L2 LINE L2 -529 2784 2686 210 71 0 0 chr3 16260517 16260545 -211264033 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 3483 118 43 42 chr3 16261019 16261147 -211263431 - L1PB4 LINE L1 0 6156 6030 2164 124 10 3 chr3 16261147 16261453 -211263125 - AluSc SINE Alu 0 309 2 3483 118 43 42 chr3 16261453 16261944 -211262634 - L1PB4 LINE L1 -126 6030 5536 2409 88 0 0 chr3 16262111 16262449 -211262129 - AluSq SINE Alu 0 313 2 499 215 0 9 chr3 16262702 16262809 -211261769 - MIR SINE MIR -112 150 45 301 246 160 46 chr3 16263090 16263265 -211261313 - MIR SINE MIR -27 235 41 254 305 195 0 chr3 16263379 16263497 -211261081 + MER91A DNA MER1_type 20 160 -36 274 227 45 0 chr3 16263530 16263596 -211260982 + MER91A DNA MER1_type 128 196 0 183 80 0 0 chr3 16263704 16263729 -211260849 + (TCCCC)n Simple_repeat Simple_repeat 3 27 0 444 266 43 103 chr3 16263958 16264459 -211260119 - L2 LINE L2 -85 3187 2725 1150 267 71 37 chr3 16265206 16265971 -211258607 - L2 LINE L2 -1 3312 2510 318 287 28 0 chr3 16268774 16268882 -211255696 - L1MC4 LINE L1 -4 8038 7928 387 259 45 0 chr3 16268893 16269005 -211255573 - MLT2E LTR ERVL -2 626 510 824 254 88 62 chr3 16269008 16269243 -211255335 + L2 LINE L2 2950 3198 -115 2343 103 3 0 chr3 16269243 16269554 -211255024 + AluSx SINE Alu 1 312 0 824 254 88 62 chr3 16269554 16269672 -211254906 + L2 LINE L2 3198 3312 -1 225 159 0 0 chr3 16269679 16269723 -211254855 + (TGGA)n Simple_repeat Simple_repeat 4 47 0 546 256 174 19 chr3 16269754 16269961 -211254617 + MIR SINE MIR 24 262 0 695 312 48 21 chr3 16270495 16270842 -211253736 - L1ME LINE L1 -442 5679 5318 1786 178 0 14 chr3 16270842 16271135 -211253443 - AluJo SINE Alu -23 289 1 695 312 48 21 chr3 16271135 16271201 -211253377 - L1ME LINE L1 -803 5318 5255 301 240 42 42 chr3 16271213 16271309 -211253269 + L1MCa LINE L1 1969 2064 -4362 * 310 318 47 0 chr3 16271259 16271344 -211253234 - L1MC4 LINE L1 -1340 6702 6614 414 0 50 0 chr3 16271349 16271436 -211253142 + (TAGA)n Simple_repeat Simple_repeat 1 91 0 323 263 71 0 chr3 16271582 16271681 -211252897 + MIR SINE MIR 138 243 -19 1544 194 3 24 chr3 16272168 16272486 -211252092 + AluJo SINE Alu 1 312 0 505 254 102 83 chr3 16272776 16272856 -211251722 - LTR16B LTR ERVL -1 463 386 1058 137 0 0 chr3 16272856 16273024 -211251554 - L1MA4 LINE L1 -5 6295 6128 505 254 102 83 chr3 16273024 16273364 -211251214 - LTR16B LTR ERVL -78 386 35 391 287 77 41 chr3 16273408 16273507 -211251071 - MIR SINE MIR -13 249 155 2361 144 95 0 chr3 16273507 16273896 -211250682 + MSTB LTR MaLR 1 426 0 391 287 77 41 chr3 16273896 16273991 -211250587 - MIR SINE MIR -107 155 48 857 245 89 57 chr3 16274147 16274628 -211249950 - LTR8A LTR ERV1 0 727 108 337 236 85 47 chr3 16274772 16274878 -211249700 - LTR8 LTR ERV1 -581 110 1 318 281 43 58 chr3 16275069 16275208 -211249370 + MER5A DNA MER1_type 29 165 -24 1858 159 45 109 chr3 16275260 16275642 -211248936 + L1MC4 LINE L1 7513 7918 -124 2359 107 0 0 chr3 16275642 16275941 -211248637 + AluSx SINE Alu 1 299 -13 1858 159 45 109 chr3 16275941 16276079 -211248499 + L1MC4 LINE L1 7918 7998 -44 2046 145 0 0 chr3 16276079 16276387 -211248191 - AluSx SINE Alu 0 308 1 1858 159 45 109 chr3 16276387 16276423 -211248155 + L1MC4 LINE L1 7998 8035 -7 304 261 252 37 chr3 16276580 16276798 -211247780 + L2 LINE L2 2971 3235 -37 342 335 50 6 chr3 16277527 16277709 -211246869 + L2 LINE L2 2655 2844 -470 613 191 13 40 chr3 16277752 16277904 -211246674 - L1M4 LINE L1 -1488 4658 4511 508 264 61 112 chr3 16277986 16278497 -211246081 + MER34 LTR ERV1 1 485 -57 214 164 164 36 chr3 16278686 16278741 -211245837 + L2 LINE L2 3168 3229 -43 385 279 39 10 chr3 16278973 16279075 -211245503 + MER5B DNA MER1_type 64 168 -10 427 250 62 94 chr3 16279075 16279267 -211245311 - MER5A DNA MER1_type -1 188 3 232 282 0 0 chr3 16279404 16279470 -211245108 - MIR SINE MIR -67 141 87 198 299 0 60 chr3 16279488 16279555 -211245023 - L2 LINE L2 -3 3269 3207 341 277 66 69 chr3 16279922 16280225 -211244353 + MLT1L LTR MaLR 1 302 -313 290 136 236 9 chr3 16280429 16280501 -211244077 + L1ME3A LINE L1 5585 5671 -507 2133 132 7 0 chr3 16280533 16280828 -211243750 - AluJo SINE Alu -15 297 1 1418 243 87 15 chr3 16280828 16281309 -211243269 + L1ME3A LINE L1 5655 6170 0 230 303 0 0 chr3 16281488 16281554 -211243024 - MIR SINE MIR -87 175 110 331 297 35 47 chr3 16281726 16281982 -211242596 + L2 LINE L2 2810 3062 -210 295 311 0 50 chr3 16282053 16282172 -211242406 - MIR SINE MIR -70 192 80 595 242 55 24 chr3 16282239 16282404 -211242174 - MIR SINE MIR 0 262 93 480 301 45 63 chr3 16282479 16282639 -211241939 + L1ME4a LINE L1 5446 5607 -514 2327 92 7 3 chr3 16282639 16282943 -211241635 - AluSx SINE Alu -7 305 1 480 301 45 63 chr3 16282943 16283273 -211241305 + L1ME4a LINE L1 5607 5927 -194 333 281 21 21 chr3 16283343 16283439 -211241139 - MIR SINE MIR -81 181 86 304 233 29 39 chr3 16283481 16283584 -211240994 + L1ME4a LINE L1 6011 6112 -9 925 272 16 12 chr3 16284747 16284990 -211239588 + MIR SINE MIR 19 262 0 720 234 35 53 chr3 16284976 16285203 -211239375 - MIR SINE MIR -34 228 6 * 362 248 97 35 chr3 16285298 16285443 -211239135 + MIR SINE MIR 7 160 -102 425 300 74 97 chr3 16285851 16286518 -211238060 + L2 LINE L2 2637 3272 0 282 217 0 0 chr3 16286538 16286607 -211237971 + (TGGG)n Simple_repeat Simple_repeat 2 70 0 333 201 11 63 chr3 16286654 16286828 -211237750 + (GAATG)n Simple_repeat Simple_repeat 2 166 0 541 264 17 0 chr3 16289062 16289228 -211235350 - MIR SINE MIR -50 158 20 238 209 0 0 chr3 16289238 16289281 -211235297 + MIR SINE MIR 111 153 -55 622 264 108 35 chr3 16290380 16290608 -211233970 - MIR SINE MIR 0 262 17 342 366 16 21 chr3 16290685 16290871 -211233707 - MIR SINE MIR -40 222 38 239 167 62 0 chr3 16291937 16291985 -211232593 - MIR SINE MIR -103 159 109 233 230 17 35 chr3 16292762 16292849 -211231729 - MIR SINE MIR -58 150 76 22 0 0 0 chr3 16293151 16293173 -211231405 + AT_rich Low_complexity Low_complexity 1 22 0 383 291 9 9 chr3 16293385 16293495 -211231083 - MIR SINE MIR -130 132 23 193 256 151 58 chr3 16294149 16294235 -211230343 - L2 LINE L2 -25 3288 3195 356 285 41 16 chr3 16294473 16294596 -211229982 + MIR SINE MIR 27 152 -110 327 315 174 13 chr3 16294864 16295013 -211229565 - MIR3 SINE MIR -26 182 10 305 294 56 40 chr3 16295275 16295401 -211229177 - MIR SINE MIR -78 184 57 750 235 71 6 chr3 16295563 16295733 -211228845 + MIR SINE MIR 1 181 -81 2437 85 0 3 chr3 16296800 16297106 -211227472 + AluY SINE Alu 1 305 -6 508 303 164 0 chr3 16297186 16297381 -211227197 - MIR SINE MIR -1 261 35 1064 182 0 0 chr3 16297566 16297731 -211226847 + AluJb SINE Alu 134 298 -14 233 280 2 0 chr3 16298219 16298292 -211226286 - Charlie8 DNA MER1_type -989 1428 1368 195 261 116 0 chr3 16298470 16298539 -211226039 + MIR3 SINE MIR 83 159 -49 249 289 23 16 chr3 16299396 16299614 -211224964 + CT-rich Low_complexity Low_complexity 2 312 0 650 235 173 0 chr3 16299877 16300056 -211224522 - MER63A DNA MER1_type 0 210 1 386 295 34 13 chr3 16301317 16301466 -211223112 - MIR3 SINE MIR -21 187 36 614 243 7 7 chr3 16301891 16302031 -211222547 + MIR SINE MIR 6 145 -117 404 233 207 33 chr3 16302567 16302717 -211221861 + MIR3 SINE MIR 10 185 -23 2539 51 0 3 chr3 16302814 16303108 -211221470 - AluY SINE Alu -18 293 1 329 254 116 43 chr3 16303287 16303425 -211221153 + MIR3 SINE MIR 14 161 -47 193 129 0 0 chr3 16303666 16303697 -211220881 + L2 LINE L2 3028 3058 -214 426 277 142 0 chr3 16303875 16304023 -211220555 - MIR SINE MIR -13 249 81 543 236 0 0 chr3 16304121 16304227 -211220351 - MER5A DNA MER1_type -80 109 4 288 314 132 0 chr3 16304273 16304394 -211220184 + MIR SINE MIR 123 259 -3 343 167 0 30 chr3 16305461 16305527 -211219051 - AluJ/FRAM SINE Alu -12 290 227 403 186 0 0 chr3 16305547 16305617 -211218961 - LTR12 LTR ERV1 -290 424 355 302 260 0 0 chr3 16305617 16305694 -211218884 - LTR30 LTR ERV1 -102 620 544 1127 141 34 93 chr3 16305696 16305987 -211218591 - LTR12 LTR ERV1 -440 274 1 559 189 0 0 chr3 16305993 16306083 -211218495 - FRAM/FAM SINE Alu -92 84 1 297 0 0 0 chr3 16306092 16306125 -211218453 + (TA)n Simple_repeat Simple_repeat 1 33 0 1944 177 71 0 chr3 16306233 16306628 -211217950 + LOR1b LTR ERV1 1 423 -38 11998 112 65 21 chr3 16306628 16306860 -211217718 + LOR1b-int LTR ERV1 32 252 -7868 2183 122 14 0 chr3 16306860 16307156 -211217422 - AluSg SINE Alu -10 300 1 11998 112 65 21 chr3 16307156 16307290 -211217288 + LOR1b-int LTR ERV1 252 379 -7741 279 0 0 0 chr3 16307290 16307321 -211217257 + (TG)n Simple_repeat Simple_repeat 2 32 0 11998 112 65 21 chr3 16307321 16307891 -211216687 + LOR1b-int LTR ERV1 379 922 -7198 2259 94 3 0 chr3 16307891 16308179 -211216399 + AluSx SINE Alu 1 289 -23 11998 112 65 21 chr3 16308179 16309309 -211215269 + LOR1b-int LTR ERV1 922 2201 -5919 2224 205 138 65 chr3 16309309 16310079 -211214499 + LTR1B LTR ERV1 1 826 0 11998 112 65 21 chr3 16310079 16310156 -211214422 + LOR1b-int LTR ERV1 2201 2273 -5847 7432 135 23 40 chr3 16310154 16310368 -211214210 + LOR1b-int LTR ERV1 2376 2592 -5528 * 2284 100 23 3 chr3 16310368 16310669 -211213909 - AluSx SINE Alu -3 309 3 7432 135 23 40 chr3 16310669 16311854 -211212724 + LOR1b-int LTR ERV1 2592 3751 -4369 6421 143 128 102 chr3 16311857 16313509 -211211069 - pTR5 LTR ERV1 0 2438 743 4915 129 39 1 chr3 16313511 16314317 -211210261 + LOR1b-int LTR ERV1 3754 4589 -3531 2488 71 0 3 chr3 16314317 16314614 -211209964 - AluY SINE Alu -15 296 1 750 235 71 6 chr3 16315691 16315861 -211208717 - MIR SINE MIR -81 181 1 234 0 0 0 chr3 16317228 16317254 -211207324 + (TTA)n Simple_repeat Simple_repeat 2 27 0 26 30 0 0 chr3 16317965 16317998 -211206580 + AT_rich Low_complexity Low_complexity 1 33 0 372 275 96 18 chr3 16320988 16321155 -211203423 + MER34 LTR ERV1 306 485 -57 215 277 75 32 chr3 16321344 16321438 -211203140 + L2 LINE L2 3209 3306 -7 458 243 221 7 chr3 16321598 16321736 -211202842 + MER5B DNA MER1_type 1 168 -10 427 250 62 94 chr3 16321736 16321928 -211202650 - MER5A DNA MER1_type -1 188 3 232 282 0 0 chr3 16322066 16322132 -211202446 - MIR SINE MIR -67 141 87 198 299 0 60 chr3 16322150 16322217 -211202361 - L2 LINE L2 -3 3269 3207 601 257 69 47 chr3 16322584 16322860 -211201718 + MLT1L LTR MaLR 1 282 -333 207 100 0 0 chr3 16322895 16322925 -211201653 + (TGGA)n Simple_repeat Simple_repeat 3 32 0 376 280 0 9 chr3 16323258 16323365 -211201213 - AluY SINE Alu -194 107 2 775 235 73 14 chr3 16323535 16323819 -211200759 + LTR16C LTR ERVL 157 484 -7 706 197 45 0 chr3 16323854 16323986 -211200592 - MIR SINE MIR -107 155 18 432 248 66 25 chr3 16324004 16324125 -211200453 + MIR SINE MIR 124 249 -13 417 211 0 0 chr3 16324906 16325029 -211199549 + (TCCA)n Simple_repeat Simple_repeat 4 126 0 368 395 0 7 chr3 16325046 16325193 -211199385 - L2 LINE L2 -18 3254 3109 632 241 47 65 chr3 16325750 16325982 -211198596 + MIR SINE MIR 1 228 -34 * 879 276 16 12 chr3 16325968 16326211 -211198367 - MIR SINE MIR 0 262 19 301 184 87 97 chr3 16327382 16327485 -211197093 - L1ME4a LINE L1 -9 6112 6011 328 281 21 21 chr3 16327527 16327623 -211196955 + MIR SINE MIR 86 181 -81 558 299 21 46 chr3 16327693 16328018 -211196560 - L1ME4a LINE L1 -194 5927 5611 2165 90 7 3 chr3 16328023 16328323 -211196255 + AluSx SINE Alu 1 301 -11 320 158 118 191 chr3 16328335 16328487 -211196091 + MLT1H LTR MaLR 409 549 0 774 189 223 55 chr3 16328526 16328592 -211195986 + MER69B DNA AcHobo 78 132 -2394 2170 169 39 7 chr3 16328592 16329023 -211195555 - L1MB7 LINE L1 0 6184 5740 774 189 223 55 chr3 16329023 16329194 -211195384 + MER69B DNA AcHobo 132 355 -2171 811 161 0 2 chr3 16329203 16329403 -211195175 + MSTC LTR MaLR 3 249 -179 * 2186 139 71 0 chr3 16329401 16329740 -211194838 + MSTC LTR MaLR 66 428 0 2335 245 77 38 chr3 16329746 16330543 -211194035 + MER69B DNA AcHobo 368 1195 -31 533 265 23 0 chr3 16331188 16331320 -211193258 - MER58B DNA MER1_type -4 337 203 272 242 37 0 chr3 16331657 16331744 -211192834 - MER58 DNA MER1_type -103 238 27 461 245 9 9 chr3 16331754 16331860 -211192718 + L2 LINE L2 3150 3255 -17 185 244 0 0 chr3 16332252 16332297 -211192281 - L2 LINE L2 -1 3312 3268 2200 106 0 0 chr3 16332425 16332726 -211191852 - AluSg SINE Alu -6 304 4 2175 84 0 10 chr3 16333446 16333742 -211190836 + AluY SINE Alu 4 296 -15 1084 136 0 0 chr3 16333743 16333898 -211190680 + AluSg/x SINE Alu 132 286 -24 231 324 20 0 chr3 16335172 16335274 -211189304 + LTR16C LTR ERVL 379 482 -9 190 293 132 28 chr3 16335395 16335501 -211189077 + L2 LINE L2 3108 3224 -48 886 226 11 5 chr3 16335507 16335693 -211188885 + MER72 LTR ERV1 1 187 -535 258 105 0 0 chr3 16335860 16335898 -211188680 + (A)n Simple_repeat Simple_repeat 1 38 0 3868 124 50 2 chr3 16336358 16336980 -211187598 + LOR1b-int LTR ERV1 3938 4589 -3531 815 91 0 0 chr3 16336980 16337090 -211187488 - AluY SINE Alu -15 296 187 5965 98 23 49 chr3 16337090 16338065 -211186513 + LOR1b-int LTR ERV1 4576 5524 -2596 1697 56 35 4 chr3 16338055 16338287 -211186291 + LOR1b-int LTR ERV1 5801 6039 -2081 * 525 167 11 0 chr3 16338289 16338379 -211186199 + LOR1b-int LTR ERV1 8030 8120 0 2334 156 66 14 chr3 16338379 16338816 -211185762 + LOR1b LTR ERV1 1 460 -1 2827 90 125 188 chr3 16339089 16340040 -211184538 - LTR12 LTR ERV1 0 2427 1 304 272 115 21 chr3 16340114 16340305 -211184273 + L2 LINE L2 2842 3050 -222 436 268 129 16 chr3 16340425 16340619 -211183959 + MER112 DNA MER1_type 39 254 -6 200 203 316 25 chr3 16340640 16340719 -211183859 + L2 LINE L2 3212 3313 0 225 94 0 0 chr3 16340817 16340849 -211183729 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 474 328 11 11 chr3 16340924 16341098 -211183480 + MER5A DNA MER1_type 7 180 -9 375 274 215 0 chr3 16341489 16341624 -211182954 - MIR SINE MIR -79 183 20 218 354 0 0 chr3 16341870 16341966 -211182612 + (CA)n Simple_repeat Simple_repeat 2 97 0 932 271 99 63 chr3 16342021 16342351 -211182227 + MLT1H LTR MaLR 37 392 -157 2397 67 0 3 chr3 16342351 16342648 -211181930 + AluSc SINE Alu 1 296 -13 932 271 99 63 chr3 16342648 16342812 -211181766 + MLT1H LTR MaLR 392 549 0 774 189 223 55 chr3 16342851 16342917 -211181661 + MER69B DNA AcHobo 78 132 -2394 2270 162 37 5 chr3 16342917 16343348 -211181230 - L1MB7 LINE L1 0 6184 5740 774 189 223 55 chr3 16343348 16343519 -211181059 + MER69B DNA AcHobo 132 355 -2171 811 161 0 2 chr3 16343528 16343728 -211180850 + MSTC LTR MaLR 3 249 -179 * 2213 136 71 0 chr3 16343726 16344065 -211180513 + MSTC LTR MaLR 66 428 0 2418 243 70 36 chr3 16344071 16344872 -211179706 + MER69B DNA AcHobo 368 1195 -31 681 220 23 0 chr3 16345517 16345649 -211178929 - MER58B DNA MER1_type -4 337 203 272 242 37 0 chr3 16345986 16346073 -211178505 - MER58 DNA MER1_type -103 238 27 299 153 17 17 chr3 16346083 16346142 -211178436 + L2 LINE L2 3150 3208 -64 267 103 0 0 chr3 16346451 16346490 -211178088 + (A)n Simple_repeat Simple_repeat 1 39 0 2102 196 15 10 chr3 16346514 16346918 -211177660 + MER72 LTR ERV1 317 722 0 227 238 0 0 chr3 16347183 16347225 -211177353 - MIR SINE MIR -3 259 218 429 232 39 15 chr3 16347864 16347993 -211176585 - MIR SINE MIR -62 146 62 2350 74 0 0 chr3 16348018 16348314 -211176264 + AluSc SINE Alu 1 296 -13 620 291 58 5 chr3 16348544 16348733 -211175845 - MIR SINE MIR -56 206 8 363 292 33 0 chr3 16348736 16348856 -211175722 - MIR SINE MIR -36 226 103 438 286 29 47 chr3 16349181 16349352 -211175226 - MIR3 SINE MIR -34 174 7 600 248 15 7 chr3 16349835 16349972 -211174606 - MIR SINE MIR -85 177 40 1305 149 0 14 chr3 16350275 16350497 -211174081 + AluJb SINE Alu 87 305 -7 508 239 89 61 chr3 16350568 16350748 -211173830 + MIR3 SINE MIR 6 190 -18 1398 217 16 82 chr3 16350804 16350954 -211173624 + L1ME3 LINE L1 5746 5904 -258 1763 148 3 21 chr3 16350954 16351245 -211173333 + AluJb SINE Alu 1 286 -26 414 0 0 0 chr3 16351249 16351295 -211173283 + (CATA)n Simple_repeat Simple_repeat 3 48 0 1398 217 16 82 chr3 16351295 16351577 -211173001 + L1ME3 LINE L1 5907 6154 -8 221 300 0 0 chr3 16351590 16351660 -211172918 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 231 274 68 0 chr3 16352337 16352410 -211172168 + MER52A LTR ERV1 1 78 -1677 6060 164 50 66 chr3 16352818 16354236 -211170342 + MER52A LTR ERV1 318 1755 0 5881 118 252 85 chr3 16354506 16355960 -211168618 + pTR5 LTR ERV1 743 2438 0 484 281 31 19 chr3 16355963 16356123 -211168455 - MIR SINE MIR -81 181 20 469 281 126 36 chr3 16356809 16357111 -211167467 + LTR16A1 LTR ERVL 81 409 -48 201 103 0 0 chr3 16357133 16357162 -211167416 - MIR SINE MIR -117 145 117 2817 231 34 18 chr3 16357872 16358217 -211166361 - L1ME2 LINE L1 0 6164 5826 2163 99 3 0 chr3 16358217 16358520 -211166058 - AluSc SINE Alu -5 304 1 2817 231 34 18 chr3 16358520 16359012 -211165566 - L1ME2 LINE L1 -338 5826 5293 676 284 96 30 chr3 16359520 16359925 -211164653 + MLT1L LTR MaLR 165 596 -19 4379 230 47 94 chr3 16359985 16360347 -211164231 - L1MB7 LINE L1 -9 6175 5797 2191 104 0 0 chr3 16360347 16360645 -211163933 - AluSx SINE Alu -14 298 1 4379 230 47 94 chr3 16360645 16361271 -211163307 - L1MB7 LINE L1 -387 5797 5143 2074 100 10 7 chr3 16361271 16361570 -211163008 - AluSc SINE Alu -9 300 1 4379 230 47 94 chr3 16361570 16363216 -211161362 - L1MB7 LINE L1 -1041 5143 3681 * 4439 146 17 37 chr3 16363212 16363292 -211161286 - L1MA8 LINE L1 -260 6031 5951 2048 113 16 19 chr3 16363292 16363603 -211160975 - AluSg SINE Alu 0 310 1 4439 146 17 37 chr3 16363603 16363949 -211160629 - L1MA8 LINE L1 -340 5951 5600 2040 118 0 3 chr3 16363949 16364267 -211160311 - AluY SINE Alu 0 311 1 4439 146 17 37 chr3 16364267 16364556 -211160022 - L1MA8 LINE L1 -691 5600 5332 2257 102 0 13 chr3 16364556 16364871 -211159707 - AluY SINE Alu 0 311 1 4439 146 17 37 chr3 16364871 16365104 -211159474 - L1MA8 LINE L1 -959 5332 5096 625 71 0 0 chr3 16365105 16365189 -211159389 + MLT2A2 LTR ERVL 1 84 -369 * 1010 198 56 34 chr3 16365186 16365504 -211159074 + MLT2B3 LTR ERVL 230 554 0 5141 144 82 17 chr3 16365547 16366029 -211158549 - L1MA8 LINE L1 -1158 4988 4539 1070 171 6 11 chr3 16366029 16366205 -211158373 - FAM SINE Alu 0 175 1 5141 144 82 17 chr3 16366205 16366739 -211157839 - L1MA8 LINE L1 -1607 4539 3906 241 200 0 17 chr3 16366711 16366771 -211157807 - L1MB7 LINE L1 -2446 3700 3642 * 3534 215 44 8 chr3 16366782 16367737 -211156841 - L1MB7 LINE L1 -2812 3334 2346 * 4156 235 49 92 chr3 16367730 16368250 -211156328 - L1MEc LINE L1 -1099 5116 4575 233 185 0 19 chr3 16368250 16368304 -211156274 - HSMAR1 DNA Mariner 0 1287 1235 329 43 22 0 chr3 16368313 16368359 -211156219 + MADE1 DNA Mariner 33 79 -1 4156 235 49 92 chr3 16368359 16368432 -211156146 - L1MEc LINE L1 -1648 4567 4492 1534 176 10 23 chr3 16368432 16368733 -211155845 + AluJo SINE Alu 1 297 -15 4156 235 49 92 chr3 16368733 16370122 -211154456 - L1MEc LINE L1 -1723 4492 3116 3356 213 31 42 chr3 16370153 16370618 -211153960 - L1ME1 LINE L1 -84 6082 5613 2452 17 40 7 chr3 16370618 16370914 -211153664 + AluYa5 SINE Alu 1 306 -5 3356 213 31 42 chr3 16370914 16372047 -211152531 - L1ME1 LINE L1 -553 5613 4501 2076 244 118 40 chr3 16372046 16372687 -211151891 - L1MEc LINE L1 -3085 3130 2541 * 297 77 19 0 chr3 16372687 16372739 -211151839 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 2129 96 0 0 chr3 16372739 16373021 -211151557 - AluSg SINE Alu -28 282 1 2076 244 118 40 chr3 16373021 16373476 -211151102 - L1MEc LINE L1 -3674 2541 1946 228 111 0 0 chr3 16373476 16373512 -211151066 + (TATATG)n Simple_repeat Simple_repeat 2 37 0 2076 244 118 40 chr3 16373512 16373666 -211150912 - L1MEc LINE L1 -4269 1946 1805 7360 43 7 0 chr3 16373752 16374820 -211149758 + L1PA5 LINE L1 5066 6139 -15 646 137 0 0 chr3 16376820 16376915 -211147663 - L1MC1 LINE L1 -17 6316 6222 1857 47 0 8 chr3 16378224 16378458 -211146120 - MER11A LTR ERVK -1034 232 1 256 296 35 61 chr3 16378510 16378625 -211145953 - L2 LINE L2 -1 3271 3160 431 311 85 85 chr3 16378645 16378986 -211145592 - L2 LINE L2 -1 3271 2931 394 253 50 33 chr3 16379143 16379318 -211145260 + MER20B DNA MER1_type 43 213 -6 2155 103 0 17 chr3 16379384 16379685 -211144893 + AluSg SINE Alu 1 296 -14 2204 94 0 0 chr3 16379685 16379982 -211144596 + AluY SINE Alu 1 297 -14 193 29 29 29 chr3 16379997 16380032 -211144546 + (GAA)n Simple_repeat Simple_repeat 3 37 0 1346 169 47 61 chr3 16380249 16380594 -211143984 - L1MC/D LINE L1 -513 5671 5288 2186 67 3 27 chr3 16380594 16380892 -211143686 + AluY SINE Alu 1 291 -20 1346 169 47 61 chr3 16380892 16380983 -211143595 - L1MC/D LINE L1 -896 5288 5197 184 129 0 0 chr3 16381117 16381148 -211143430 - L2 LINE L2 -17 3255 3225 204 278 68 115 chr3 16381361 16381613 -211142965 + L2 LINE L2 2465 2704 -610 211 172 62 109 chr3 16382250 16382314 -211142264 - MIR3 SINE MIR -43 165 105 309 276 158 16 chr3 16382315 16382442 -211142136 - MER5B DNA MER1_type 0 178 34 2085 114 0 7 chr3 16382812 16383111 -211141467 + AluY SINE Alu 1 297 -14 202 246 33 16 chr3 16383147 16383208 -211141370 + MER5A DNA MER1_type 128 189 0 400 266 50 14 chr3 16383258 16383397 -211141181 + L2 LINE L2 3158 3301 -12 187 333 83 0 chr3 16383854 16383938 -211140640 + MIR SINE MIR 56 146 -116 976 180 0 0 chr3 16384567 16384728 -211139850 + FRAM SINE Alu 2 162 -14 225 0 0 0 chr3 16384879 16384904 -211139674 + (CA)n Simple_repeat Simple_repeat 2 26 0 1428 188 14 11 chr3 16384904 16385181 -211139397 - AluSx SINE Alu -17 295 18 281 333 64 30 chr3 16385183 16385324 -211139254 - MIR SINE MIR -66 142 1 331 344 84 15 chr3 16385524 16385655 -211138923 - L3 LINE CR1 -115 1462 1323 289 287 119 0 chr3 16385678 16385779 -211138799 - L2 LINE L2 -5 3267 3155 1279 183 0 20 chr3 16386952 16387198 -211137380 - AluJb SINE Alu -71 241 1 2068 110 10 0 chr3 16388029 16388321 -211136257 - AluSp SINE Alu -18 295 1 798 262 113 0 chr3 16388750 16388971 -211135607 + MIR SINE MIR 2 247 -15 209 250 27 89 chr3 16389465 16389577 -211135001 + MIR SINE MIR 1 105 -157 2324 85 0 19 chr3 16389582 16389899 -211134679 - AluSx SINE Alu -1 311 1 2069 108 0 0 chr3 16390051 16390351 -211134227 - AluSc SINE Alu 0 300 1 23 33 0 0 chr3 16390361 16390391 -211134187 + AT_rich Low_complexity Low_complexity 1 30 0 333 267 0 0 chr3 16390508 16390583 -211133995 + MIR3 SINE MIR 111 185 -23 608 122 20 20 chr3 16390940 16391038 -211133540 + MER4A LTR ERV1 1 98 -566 1850 131 9 25 chr3 16391039 16391389 -211133189 + MER4A LTR ERV1 262 664 0 575 91 0 61 chr3 16391594 16391693 -211132885 - AluSp/q SINE Alu -6 307 215 1826 161 50 35 chr3 16391693 16392145 -211132433 + LTR10B LTR ERV1 1 547 0 2435 211 63 32 chr3 16392145 16392904 -211131674 + LTR10B-int LTR ERV1 4 846 -6061 2190 249 11 8 chr3 16392939 16393460 -211131118 + LTR10B-int LTR ERV1 1114 1636 -5013 * 5109 113 33 19 chr3 16393454 16394240 -211130338 + LTR10B-int LTR ERV1 1871 2667 -3982 * 5286 273 57 40 chr3 16394225 16396037 -211128541 + LTR10B-int LTR ERV1 3124 4966 -2819 1906 234 28 0 chr3 16396087 16396476 -211128102 + BaEV-int LTR ERV1 4229 4628 -2021 2380 37 3 56 chr3 16396512 16396835 -211127743 + AluY SINE Alu 1 306 -5 3240 202 24 40 chr3 16396836 16397969 -211126609 - L1MC/D LINE L1 -743 5337 4435 2069 239 125 37 chr3 16397968 16398609 -211125969 - L1ME LINE L1 -3085 2995 2411 * 2129 96 0 0 chr3 16398609 16398943 -211125635 - AluSg SINE Alu 0 334 1 2069 239 125 37 chr3 16398943 16399398 -211125180 - L1ME LINE L1 -3669 2411 1809 228 111 0 0 chr3 16399398 16399434 -211125144 + (TATATG)n Simple_repeat Simple_repeat 2 37 0 2069 239 125 37 chr3 16399434 16399588 -211124990 - L1ME LINE L1 -4271 1809 1670 7454 41 7 3 chr3 16399674 16400759 -211123819 + L1PA5 LINE L1 5066 6153 -1 253 204 19 37 chr3 16400873 16400927 -211123651 + L3 LINE CR1 1052 1104 -473 414 265 75 55 chr3 16400939 16401139 -211123439 + Charlie8 DNA MER1_type 2 205 -2212 1443 156 4 4 chr3 16401188 16401425 -211123153 - AluSx SINE Alu -73 239 3 1052 258 44 34 chr3 16401441 16401545 -211123033 - L1ME LINE L1 -5047 1023 922 663 139 0 0 chr3 16401545 16401653 -211122925 - L1MA7 LINE L1 -2 6289 6182 1052 258 44 34 chr3 16401653 16402126 -211122452 - L1ME LINE L1 -5148 922 525 934 276 77 13 chr3 16403001 16403312 -211121266 + LTR16C LTR ERVL 147 477 -14 862 244 181 25 chr3 16403365 16403939 -211120639 + L2 LINE L2 2481 3147 -166 182 306 129 20 chr3 16404072 16404219 -211120359 + L2 LINE L2 3105 3267 -5 291 235 183 11 chr3 16404403 16404556 -211120022 + MIR SINE MIR 4 179 -63 463 264 76 100 chr3 16404626 16404876 -211119702 - MIR SINE MIR -17 245 2 283 274 12 0 chr3 16404978 16405062 -211119516 + MIR SINE MIR 43 127 -135 1433 231 71 37 chr3 16405062 16405552 -211119026 - MLT1E2 LTR MaLR 0 505 1 2414 51 3 0 chr3 16405571 16405920 -211118658 - AluY SINE Alu 0 311 1 784 286 109 10 chr3 16405958 16406373 -211118205 + LTR16C LTR ERVL 1 484 -7 706 197 45 0 chr3 16406408 16406540 -211118038 - MIR SINE MIR -107 155 18 432 248 66 25 chr3 16406558 16406679 -211117899 + MIR SINE MIR 124 249 -13 435 202 0 0 chr3 16407460 16407579 -211116999 + (TCCA)n Simple_repeat Simple_repeat 4 122 0 400 386 7 0 chr3 16407596 16407741 -211116837 - L2 LINE L2 -18 3254 3109 351 284 21 106 chr3 16407778 16408014 -211116564 + Charlie8 DNA MER1_type 10 225 -2192 279 254 51 65 chr3 16408550 16408688 -211115890 - LTR67 LTR ERVL -4 553 418 2465 202 48 72 chr3 16409208 16409684 -211114894 - L1MC5 LINE L1 -44 7917 7431 1580 171 45 0 chr3 16409684 16409970 -211114608 + AluJo SINE Alu 1 299 -13 2465 202 48 72 chr3 16409970 16410092 -211114486 - L1MC5 LINE L1 -530 7431 7308 1348 211 6 30 chr3 16410092 16410424 -211114154 + MER33 DNA MER1_type 1 324 0 2465 202 48 72 chr3 16410424 16410656 -211113922 - L1MC5 LINE L1 -653 7308 7106 334 286 102 53 chr3 16410677 16410883 -211113695 + L2 LINE L2 3027 3242 -71 358 281 47 31 chr3 16410933 16411061 -211113517 + MIR3 SINE MIR 3 132 -76 325 259 12 0 chr3 16411678 16411763 -211112815 - MIR SINE MIR -114 148 63 350 273 13 0 chr3 16411779 16411856 -211112722 - L2 LINE L2 0 3272 3195 2552 88 28 25 chr3 16411973 16412335 -211112243 - THE1B LTR MaLR 0 364 2 341 241 125 0 chr3 16412539 16412651 -211111927 - L2 LINE L2 -3 3310 3185 347 274 28 57 chr3 16412666 16412772 -211111806 - MER91C DNA MER1_type -35 105 3 458 210 68 56 chr3 16412776 16412938 -211111640 - L2 LINE L2 -123 3190 3027 246 206 206 9 chr3 16412939 16413046 -211111532 - LTR33 LTR ERVL -1 520 393 505 236 56 46 chr3 16413134 16413329 -211111249 - LTR33 LTR ERVL -308 213 17 819 260 131 26 chr3 16413527 16413989 -211110589 - L2 LINE L2 -316 2997 2479 3037 112 0 18 chr3 16413989 16414425 -211110153 + MSTC LTR MaLR 1 428 0 819 260 131 26 chr3 16414425 16414454 -211110124 - L2 LINE L2 -834 2479 2454 701 176 59 94 chr3 16414609 16414865 -211109713 + L1MC5 LINE L1 7670 7916 -45 2311 93 0 0 chr3 16414893 16415194 -211109384 + AluSx SINE Alu 1 301 -11 1429 164 30 43 chr3 16415226 16415531 -211109047 + L1MD2 LINE L1 6057 6357 -2 3967 142 27 24 chr3 16415531 16416193 -211108385 + L1MB3 LINE L1 5470 6137 -46 2051 116 0 10 chr3 16416193 16416494 -211108084 + AluSx SINE Alu 1 298 -14 3967 142 27 24 chr3 16416494 16416541 -211108037 + L1MB3 LINE L1 6137 6182 -1 196 375 45 0 chr3 16416865 16416953 -211107625 + L2 LINE L2 2982 3073 -199 522 246 23 0 chr3 16416964 16417094 -211107484 - MER94 DNA DNA -1 133 1 319 258 140 0 chr3 16417145 16417238 -211107340 + L2 LINE L2 3134 3239 -33 318 257 43 0 chr3 16417256 16417326 -211107252 + LTR16B LTR ERVL 386 458 -6 303 28 0 0 chr3 16417559 16417595 -211106983 + (TC)n Simple_repeat Simple_repeat 1 36 0 592 250 79 7 chr3 16417904 16418056 -211106522 - MER5B DNA MER1_type -1 177 15 4173 33 19 0 chr3 16418395 16418876 -211105702 + LTR2B LTR ERV1 1 490 0 241 322 22 11 chr3 16418923 16419013 -211105565 + L2 LINE L2 3173 3263 -9 246 265 31 31 chr3 16419077 16419175 -211105403 + (TGGA)n Simple_repeat Simple_repeat 4 101 0 3925 232 96 97 chr3 16419226 16420197 -211104381 - L2 LINE L2 -8 3305 2335 1834 120 85 0 chr3 16420197 16420480 -211104098 + AluSx SINE Alu 1 307 -5 3925 232 96 97 chr3 16420480 16420975 -211103603 - L2 LINE L2 -978 2335 1841 531 212 24 3 chr3 16420975 16421118 -211103460 + MLT1H LTR MaLR 20 203 -346 3925 232 96 97 chr3 16421118 16421865 -211102713 - L2 LINE L2 -1472 1841 953 216 0 0 0 chr3 16421885 16421909 -211102669 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1778 99 32 35 chr3 16421920 16422204 -211102374 - AluSq SINE Alu -30 283 1 2265 87 7 3 chr3 16422368 16422677 -211101901 - AluSx SINE Alu 0 312 3 310 280 152 15 chr3 16423044 16423176 -211101402 + MER5B DNA MER1_type 29 178 0 211 172 62 109 chr3 16423177 16423241 -211101337 + MIR3 SINE MIR 105 165 -43 230 284 65 111 chr3 16423869 16424130 -211100448 - L2 LINE L2 -601 2713 2465 187 129 0 0 chr3 16424345 16424376 -211100202 + L2 LINE L2 3225 3255 -17 3121 164 109 71 chr3 16424510 16424601 -211099977 + L1MB7 LINE L1 5197 5283 -901 2324 67 3 27 chr3 16424601 16424899 -211099679 - AluY SINE Alu -20 291 1 3121 164 109 71 chr3 16424899 16425301 -211099277 + L1MB7 LINE L1 5283 5668 -516 1741 159 0 0 chr3 16425301 16425552 -211099026 - AluJb SINE Alu -61 251 1 2213 118 7 0 chr3 16425561 16425858 -211098720 - AluSq SINE Alu -9 304 6 2330 104 0 0 chr3 16425858 16426157 -211098421 - AluSx SINE Alu -13 299 1 3121 164 109 71 chr3 16426157 16426596 -211097982 + L1MB7 LINE L1 5674 6184 0 500 308 91 0 chr3 16426598 16426741 -211097837 - MER91A DNA MER1_type -40 156 1 302 247 43 21 chr3 16427261 16427354 -211097224 + MIR SINE MIR 48 142 -120 180 379 74 0 chr3 16427656 16427751 -211096827 + L2 LINE L2 3082 3183 -89 * 460 231 0 28 chr3 16427744 16427852 -211096726 + MIR SINE MIR 87 191 -71 2311 208 79 12 chr3 16427903 16428408 -211096170 - MLT1F LTR MaLR 0 542 4 257 284 25 12 chr3 16428453 16428534 -211096044 - MIR SINE MIR -179 83 2 263 295 13 26 chr3 16428640 16428718 -211095860 - MIR3 SINE MIR -117 91 15 400 274 32 24 chr3 16428790 16428914 -211095664 + MIR SINE MIR 18 142 -66 1003 242 92 84 chr3 16428942 16429210 -211095368 - L2 LINE L2 -5 3308 3044 2138 132 0 3 chr3 16429210 16429505 -211095073 + AluSg SINE Alu 1 294 -16 1003 242 92 84 chr3 16429505 16429889 -211094689 - L2 LINE L2 -269 3044 2649 196 298 63 23 chr3 16430285 16430473 -211094105 + L2 LINE L2 2837 3036 -236 2804 124 13 0 chr3 16430473 16430923 -211093655 + L1P5 LINE L1 5334 5789 -367 517 247 48 12 chr3 16430961 16431127 -211093451 - MER20 DNA MER1_type -40 179 8 307 247 12 0 chr3 16431597 16431682 -211092896 + AluY SINE Alu 81 166 -135 336 275 0 44 chr3 16431738 16431829 -211092749 + L1MC4 LINE L1 6617 6703 -1339 529 163 0 20 chr3 16431855 16431953 -211092625 + L1PB4 LINE L1 5782 5877 -279 846 118 0 0 chr3 16432129 16432248 -211092330 + AluSg/x SINE Alu 193 311 -1 255 323 122 39 chr3 16432252 16432531 -211092047 + L2 LINE L2 2382 2683 -631 307 246 105 35 chr3 16432669 16432783 -211091795 + L2 LINE L2 2932 3053 -219 1765 232 107 42 chr3 16432938 16433649 -211090929 - L1ME3 LINE L1 0 6162 5406 308 289 128 7 chr3 16434487 16434636 -211089942 + L2 LINE L2 3139 3305 -8 195 250 33 17 chr3 16434715 16434775 -211089803 - MIR SINE MIR -74 188 128 699 257 60 49 chr3 16435007 16435231 -211089347 - MIR SINE MIR -41 221 5 2275 118 10 0 chr3 16435247 16435553 -211089025 + AluSc SINE Alu 1 309 0 1311 256 44 46 chr3 16435701 16436112 -211088466 - MLT1J LTR MaLR -2 509 100 225 0 0 0 chr3 16436157 16436182 -211088396 + (T)n Simple_repeat Simple_repeat 1 25 0 208 322 138 0 chr3 16436258 16436345 -211088233 + L2 LINE L2 3124 3222 -50 186 292 0 0 chr3 16436460 16436508 -211088070 + MIR SINE MIR 102 149 -113 355 252 148 22 chr3 16436591 16436726 -211087852 - L1ME4a LINE L1 -100 6021 5870 336 305 42 75 chr3 16436736 16436949 -211087629 + L1ME LINE L1 2 207 -5863 187 340 160 0 chr3 16437171 16437265 -211087313 - MIR3 SINE MIR -27 181 73 315 247 13 13 chr3 16437485 16437562 -211087016 - L1ME4a LINE L1 -2 6119 6043 248 237 99 153 chr3 16438022 16438153 -211086425 + MIR3 SINE MIR 37 160 -48 390 261 11 0 chr3 16438207 16438295 -211086283 - MIR SINE MIR -15 247 159 1096 300 101 17 chr3 16438296 16438822 -211085756 + MLT1K LTR MaLR 4 573 -15 1635 158 7 28 chr3 16438866 16439151 -211085427 - AluJo SINE Alu -33 279 1 422 176 133 46 chr3 16439169 16439320 -211085258 - MIR SINE MIR -63 145 8 657 244 37 83 chr3 16439352 16439594 -211084984 + MIR SINE MIR 8 238 -24 218 204 74 0 chr3 16439948 16440002 -211084576 + C-rich Low_complexity Low_complexity 2 59 0 935 199 52 47 chr3 16440448 16440659 -211083919 + MIR SINE MIR 19 230 -32 1422 164 13 51 chr3 16441383 16441694 -211082884 + AluJb SINE Alu 5 303 -9 615 159 188 7 chr3 16441719 16441857 -211082721 - L1M4 LINE L1 -529 5655 5493 332 208 42 21 chr3 16442096 16442192 -211082386 - MIR SINE MIR -108 154 57 529 243 81 27 chr3 16442965 16443113 -211081465 - MIR SINE MIR -72 190 35 705 315 42 4 chr3 16443626 16443864 -211080714 + MIR SINE MIR 6 252 -10 277 277 59 30 chr3 16443900 16444001 -211080577 + MIR3 SINE MIR 58 161 -47 216 243 162 88 chr3 16444237 16444385 -211080193 + MIR SINE MIR 32 190 -72 256 303 0 56 chr3 16444951 16445040 -211079538 + MIR SINE MIR 13 96 -166 * 341 336 107 0 chr3 16445039 16445161 -211079417 + L2 LINE L2 3138 3272 0 451 198 77 0 chr3 16445169 16445260 -211079318 + MIR SINE MIR 94 191 -71 259 317 165 18 chr3 16445422 16445586 -211078992 - MIR SINE MIR -40 222 35 1894 272 71 31 chr3 16445641 16446069 -211078509 - L1M4 LINE L1 -1601 4545 4136 2327 117 0 0 chr3 16446069 16446369 -211078209 + AluSx SINE Alu 1 300 -12 1894 272 71 31 chr3 16446369 16446915 -211077663 - L1M4 LINE L1 -2010 4136 3532 376 208 115 0 chr3 16447437 16447533 -211077045 - MIR SINE MIR -33 229 123 225 170 234 43 chr3 16448208 16448302 -211076276 - LTR33 LTR ERVL -363 158 47 385 257 55 0 chr3 16449615 16449724 -211074854 - MIR SINE MIR -51 211 97 337 283 75 0 chr3 16449726 16449832 -211074746 - L2 LINE L2 -658 2656 2543 225 0 0 0 chr3 16449953 16449978 -211074600 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 189 162 68 122 chr3 16450019 16450093 -211074485 + L2 LINE L2 1422 1491 -1823 184 209 90 45 chr3 16450369 16450436 -211074142 + L2 LINE L2 2686 2755 -559 884 225 57 33 chr3 16450553 16450797 -211073781 + MIR SINE MIR 11 260 -2 470 279 78 70 chr3 16450903 16451161 -211073417 + L2 LINE L2 3000 3259 -13 258 32 0 0 chr3 16451161 16451192 -211073386 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 279 0 0 0 chr3 16451617 16451648 -211072930 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 294 300 78 0 chr3 16452212 16452302 -211072276 - MIR SINE MIR -87 121 25 308 355 0 0 chr3 16453022 16453132 -211071446 - MIR SINE MIR -16 246 137 435 263 25 17 chr3 16453481 16453599 -211070979 - L2 LINE L2 -3 3310 3192 312 306 48 68 chr3 16454203 16454497 -211070081 + L1M2a LINE L1 1089 1376 -5792 642 264 201 5 chr3 16455224 16455607 -211068971 - L2 LINE L2 -341 2973 2516 180 364 164 0 chr3 16455685 16455795 -211068783 + MIR SINE MIR 120 247 -15 623 285 72 17 chr3 16456143 16456378 -211068200 + MIR SINE MIR 2 249 -13 282 233 79 45 chr3 16457143 16457264 -211067314 + MIR3 SINE MIR 26 154 -54 219 351 76 23 chr3 16457488 16457619 -211066959 - L2 LINE L2 -14 3258 3121 456 261 8 8 chr3 16457619 16457738 -211066840 - MIR SINE MIR -90 172 54 360 381 15 31 chr3 16457792 16458052 -211066526 - L2 LINE L2 -193 3079 2824 2109 140 10 3 chr3 16458197 16458504 -211066074 - AluSx SINE Alu -3 309 1 369 223 190 58 chr3 16458568 16458689 -211065889 + MER5A DNA MER1_type 32 168 -21 253 360 117 14 chr3 16459199 16459413 -211065165 - L2 LINE L2 -508 2806 2571 2448 48 20 3 chr3 16459793 16460085 -211064493 - AluY SINE Alu -14 297 1 556 282 106 22 chr3 16460227 16460454 -211064124 + MIR SINE MIR 15 260 -2 22 0 0 0 chr3 16460454 16460476 -211064102 + AT_rich Low_complexity Low_complexity 1 22 0 1287 62 6 50 chr3 16460483 16460686 -211063892 - AluY SINE Alu 0 307 113 34 0 0 0 chr3 16460692 16460726 -211063852 + AT_rich Low_complexity Low_complexity 1 34 0 327 173 120 0 chr3 16460741 16460816 -211063762 - MER103 DNA DNA -79 87 4 357 243 27 135 chr3 16461110 16461332 -211063246 + L2 LINE L2 2992 3189 -83 602 256 52 29 chr3 16462299 16462471 -211062107 - MIR SINE MIR -85 177 2 1292 243 87 57 chr3 16462521 16462960 -211061618 - MER20B DNA MER1_type -1 782 257 1896 134 19 51 chr3 16462960 16463274 -211061304 + AluJb SINE Alu 1 304 -8 1292 243 87 57 chr3 16463274 16463524 -211061054 - MER20B DNA MER1_type -526 257 16 2151 138 0 3 chr3 16463894 16464192 -211060386 + AluSx SINE Alu 1 297 -15 741 146 0 41 chr3 16464202 16464325 -211060253 + FLAM_C SINE Alu 1 118 -25 347 0 0 23 chr3 16464325 16464369 -211060209 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 592 274 41 118 chr3 16464492 16464832 -211059746 + L2 LINE L2 2959 3272 0 333 316 35 0 chr3 16465917 16466031 -211058547 + MIR SINE MIR 85 202 -60 2239 110 0 13 chr3 16466092 16466400 -211058178 + AluSx SINE Alu 5 308 -4 2614 62 0 0 chr3 16466422 16466728 -211057850 + AluY SINE Alu 1 306 -5 287 218 218 0 chr3 16466749 16466827 -211057751 + MIR SINE MIR 33 127 -81 1976 147 31 0 chr3 16466853 16467145 -211057433 - AluJo SINE Alu -11 301 1 3872 142 65 80 chr3 16467160 16467341 -211057237 - L1MB7 LINE L1 -10 6174 5992 2280 137 0 20 chr3 16467341 16467685 -211056893 - MER1B DNA MER1_type 0 337 1 3872 142 65 80 chr3 16467685 16468028 -211056550 - L1MB7 LINE L1 -192 5992 5645 492 18 0 0 chr3 16468028 16468085 -211056493 + (CA)n Simple_repeat Simple_repeat 1 57 0 1982 135 13 16 chr3 16468085 16468389 -211056189 + AluJb SINE Alu 1 303 -9 3872 142 65 80 chr3 16468389 16468712 -211055866 - L1MB7 LINE L1 -538 5646 5320 2437 80 3 0 chr3 16468712 16469014 -211055564 - AluY SINE Alu -8 303 1 3872 142 65 80 chr3 16469014 16469065 -211055513 - L1MB7 LINE L1 -864 5320 5283 2219 107 3 3 chr3 16469065 16469364 -211055214 - AluSg SINE Alu -11 299 1 3872 142 65 80 chr3 16469364 16469411 -211055167 - L1MB7 LINE L1 -901 5283 5237 183 83 0 0 chr3 16469412 16469436 -211055142 + MIR SINE MIR 116 139 -69 208 311 22 44 chr3 16469596 16469686 -211054892 - MIR SINE MIR -65 143 56 479 303 99 28 chr3 16469767 16469978 -211054600 - MIR SINE MIR -16 246 21 1033 219 23 5 chr3 16470413 16470628 -211053950 + MER20 DNA MER1_type 1 219 0 686 48 0 0 chr3 16470796 16470879 -211053699 - AluY SINE Alu -13 298 216 225 0 0 0 chr3 16470933 16470958 -211053620 + (T)n Simple_repeat Simple_repeat 1 25 0 319 286 82 0 chr3 16471069 16471167 -211053411 + L2 LINE L2 3143 3248 -24 1117 181 41 23 chr3 16471284 16471505 -211053073 - MIR SINE MIR -25 237 13 2257 102 3 7 chr3 16471714 16472019 -211052559 + AluSx SINE Alu 1 304 -8 281 306 28 28 chr3 16472189 16472297 -211052281 - MER5B DNA MER1_type -34 144 37 409 282 184 68 chr3 16472382 16472616 -211051962 + L2 LINE L2 3002 3262 -10 290 288 220 0 chr3 16472676 16472794 -211051784 + MIR SINE MIR 28 171 -91 329 271 56 28 chr3 16473481 16473588 -211050990 - MIR SINE MIR -63 199 90 335 342 17 4 chr3 16473883 16474117 -211050461 + L1ME4a LINE L1 4808 5044 -1102 37 23 0 0 chr3 16474487 16474531 -211050047 + AT_rich Low_complexity Low_complexity 1 44 0 226 301 89 41 chr3 16474535 16474658 -211049920 + MIR SINE MIR 86 214 -48 382 337 106 10 chr3 16474861 16475060 -211049518 - L1ME4a LINE L1 -213 5908 5691 313 315 45 0 chr3 16475282 16475393 -211049185 + L1ME4a LINE L1 5543 5658 -463 1146 185 189 0 chr3 16475396 16475645 -211048933 + AluSx SINE Alu 1 296 -16 791 274 13 8 chr3 16475647 16475884 -211048694 + L1ME4a LINE L1 5661 5898 -223 292 274 89 40 chr3 16476119 16476243 -211048335 - MIR SINE MIR -48 214 85 591 243 99 0 chr3 16476395 16476547 -211048031 + MIR SINE MIR 96 262 0 1613 148 89 0 chr3 16476726 16476837 -211047741 + AluSx SINE Alu 1 101 -211 206 93 0 23 chr3 16476837 16476880 -211047698 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 1613 148 89 0 chr3 16476880 16477039 -211047539 + AluSx SINE Alu 101 295 -17 1259 137 42 54 chr3 16477308 16477428 -211047150 + AluJb SINE Alu 3 123 -189 240 111 0 0 chr3 16477428 16477473 -211047105 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1877 110 3 38 chr3 16477477 16477769 -211046809 - AluSx SINE Alu -30 282 1 1259 137 42 54 chr3 16477769 16477884 -211046694 + AluJb SINE Alu 126 240 -72 282 226 85 19 chr3 16478893 16478999 -211045579 - MER20B DNA MER1_type -657 126 14 1641 209 162 2 chr3 16479207 16479652 -211044926 - L1ME3A LINE L1 -6 6164 5649 806 112 0 0 chr3 16479694 16479801 -211044777 + FLAM_A SINE Alu 19 125 -17 1383 133 5 0 chr3 16480465 16480660 -211043918 - MLT1A1 LTR MaLR 0 365 170 1483 182 16 11 chr3 16480660 16480959 -211043619 - MLT1A1 LTR MaLR 0 365 4 372 277 117 15 chr3 16481338 16481475 -211043103 + MIR SINE MIR 71 221 -41 1869 117 42 3 chr3 16481622 16481905 -211042673 + AluSg SINE Alu 1 294 -16 273 323 184 14 chr3 16483106 16483388 -211041190 + L2 LINE L2 2648 2977 -337 799 83 19 0 chr3 16483486 16483594 -211040984 - AluSp/q SINE Alu -15 298 189 505 261 91 12 chr3 16483839 16483906 -211040672 + MER5A DNA MER1_type 12 72 -117 2312 54 0 54 chr3 16483906 16484219 -211040359 + AluY SINE Alu 3 298 -13 505 261 91 12 chr3 16484219 16484316 -211040262 + MER5A DNA MER1_type 72 189 0 400 266 50 14 chr3 16484366 16484505 -211040073 + L2 LINE L2 3158 3301 -12 187 333 83 0 chr3 16484962 16485046 -211039532 + MIR SINE MIR 56 146 -116 976 180 0 0 chr3 16485670 16485831 -211038747 + FRAM SINE Alu 2 162 -14 225 0 0 0 chr3 16485982 16486007 -211038571 + (CA)n Simple_repeat Simple_repeat 2 26 0 1428 188 14 11 chr3 16486007 16486284 -211038294 - AluSx SINE Alu -17 295 18 281 333 64 30 chr3 16486286 16486427 -211038151 - MIR SINE MIR -66 142 1 506 277 70 76 chr3 16486450 16486793 -211037785 + L2 LINE L2 2921 3261 -11 1134 247 125 23 chr3 16486916 16487448 -211037130 + MLT1L LTR MaLR 1 612 -3 362 326 174 0 chr3 16487540 16487770 -211036808 + L2 LINE L2 3002 3271 -1 341 250 0 0 chr3 16487859 16487927 -211036651 + MIR3 SINE MIR 93 160 -48 187 364 27 43 chr3 16488378 16488565 -211036013 - L2 LINE L2 -273 2999 2816 2039 102 0 3 chr3 16489196 16489521 -211035057 + AluSx SINE Alu 1 324 0 222 222 37 19 chr3 16489550 16489604 -211034974 + MIR3 SINE MIR 150 204 -4 4334 153 27 10 chr3 16489672 16490439 -211034139 - L1MC1 LINE L1 -9 6324 5545 2692 221 25 0 chr3 16490449 16491054 -211033524 - L1MC1 LINE L1 -1010 5136 4517 816 305 111 32 chr3 16491238 16491679 -211032899 - L2 LINE L2 0 3272 2792 439 323 120 5 chr3 16491711 16491903 -211032675 - MIR SINE MIR -28 234 21 894 230 31 5 chr3 16492454 16492650 -211031928 + MIR SINE MIR 31 231 -31 2125 113 0 7 chr3 16492736 16493038 -211031540 - AluSx SINE Alu -12 300 1 2069 108 0 0 chr3 16493190 16493490 -211031088 - AluSc SINE Alu 0 300 1 333 267 0 0 chr3 16493647 16493722 -211030856 + MIR3 SINE MIR 111 185 -23 608 122 20 20 chr3 16494079 16494177 -211030401 + MER4A LTR ERV1 1 98 -566 1850 131 9 25 chr3 16494178 16494528 -211030050 + MER4A LTR ERV1 262 664 0 575 91 0 61 chr3 16494733 16494832 -211029746 - AluSp/q SINE Alu -6 307 215 1826 161 50 35 chr3 16494832 16495284 -211029294 + LTR10B LTR ERV1 1 547 0 2435 211 63 32 chr3 16495284 16496043 -211028535 + LTR10B-int LTR ERV1 4 846 -6061 2190 249 11 8 chr3 16496078 16496599 -211027979 + LTR10B-int LTR ERV1 1114 1636 -5013 * 5109 113 33 19 chr3 16496593 16497379 -211027199 + LTR10B-int LTR ERV1 1871 2667 -3982 * 5245 273 58 42 chr3 16497364 16499179 -211025399 + LTR10B-int LTR ERV1 3124 4966 -2819 1868 234 31 0 chr3 16499229 16499617 -211024961 + BaEV-int LTR ERV1 4229 4628 -2021 2302 41 3 57 chr3 16499653 16499970 -211024608 + AluY SINE Alu 1 300 -11 1678 158 10 10 chr3 16499971 16500269 -211024309 + AluSx SINE Alu 1 298 -14 920 182 161 108 chr3 16500384 16500670 -211023908 - AluJo SINE Alu -1 301 1 180 0 0 0 chr3 16500936 16500956 -211023622 + (A)n Simple_repeat Simple_repeat 1 20 0 346 293 49 73 chr3 16501087 16501333 -211023245 - MLT1L LTR MaLR -228 387 148 490 264 91 8 chr3 16501416 16501537 -211023041 + L2 LINE L2 3183 3313 0 244 245 19 0 chr3 16501546 16501599 -211022979 - MLT1L LTR MaLR -560 55 2 21 0 0 0 chr3 16503460 16503481 -211021097 + AT_rich Low_complexity Low_complexity 1 21 0 366 291 79 62 chr3 16503668 16503960 -211020618 + MARNA DNA Mariner 61 357 -229 471 287 30 12 chr3 16504028 16504192 -211020386 - MIR SINE MIR -46 216 50 1743 174 0 0 chr3 16504250 16504548 -211020030 + AluSx SINE Alu 1 298 -14 264 295 32 0 chr3 16504676 16504771 -211019807 + MARNA DNA Mariner 478 575 -11 188 338 14 27 chr3 16505504 16505578 -211019000 + L2 LINE L2 3174 3246 -26 450 206 82 106 chr3 16505592 16505762 -211018816 - MIR SINE MIR -10 252 87 1722 164 3 0 chr3 16506100 16506382 -211018196 + AluJb SINE Alu 1 286 -26 216 0 0 0 chr3 16506382 16506406 -211018172 + (AAATG)n Simple_repeat Simple_repeat 2 25 0 1722 164 3 0 chr3 16506406 16506422 -211018156 + AluJb SINE Alu 286 300 -12 1640 191 86 19 chr3 16506986 16507357 -211017221 - MSTD LTR MaLR 0 396 1 728 224 20 57 chr3 16507845 16507856 -211016722 - L1ME2 LINE L1 0 6184 6174 2185 116 0 3 chr3 16507856 16508167 -211016411 + AluSx SINE Alu 1 310 -2 728 224 20 57 chr3 16508167 16508380 -211016198 - L1ME2 LINE L1 -10 6174 5951 3221 142 79 39 chr3 16508382 16508600 -211015978 + MER41B LTR ERV1 1 209 -426 706 122 7 108 chr3 16508600 16508748 -211015830 + FLAM_C SINE Alu 1 133 0 3221 142 79 39 chr3 16508748 16508889 -211015689 + MER41B LTR ERV1 209 343 -292 2158 115 0 3 chr3 16508889 16509193 -211015385 + AluSx SINE Alu 1 303 -9 3221 142 79 39 chr3 16509193 16509258 -211015320 + MER41B LTR ERV1 343 404 -231 1927 151 0 0 chr3 16509258 16509562 -211015016 + AluSx SINE Alu 1 304 -8 3221 142 79 39 chr3 16509562 16509621 -211014957 + MER41B LTR ERV1 404 459 -176 2064 122 3 3 chr3 16509621 16509925 -211014653 - AluSx SINE Alu -8 304 1 3221 142 79 39 chr3 16509925 16510049 -211014529 + MER41B LTR ERV1 459 635 0 290 217 152 0 chr3 16510057 16510149 -211014429 - L1ME2 LINE L1 -217 5953 5848 264 240 0 0 chr3 16510327 16510377 -211014201 + MER92B LTR ERV1 1 50 -586 2050 117 27 0 chr3 16510395 16510668 -211013910 + AluSx SINE Alu 1 265 -47 282 29 0 0 chr3 16510668 16510703 -211013875 + (TC)n Simple_repeat Simple_repeat 1 35 0 * 306 0 0 0 chr3 16510702 16510736 -211013842 + (CA)n Simple_repeat Simple_repeat 1 34 0 2050 117 27 0 chr3 16510703 16510760 -211013818 + AluSx SINE Alu 265 306 -6 611 135 48 0 chr3 16510760 16510864 -211013714 - MER41A LTR ERV1 -12 542 434 2063 114 7 3 chr3 16510864 16511171 -211013407 + AluSx SINE Alu 1 308 -4 569 125 0 0 chr3 16511189 16511269 -211013309 + AluSg/x SINE Alu 119 198 -112 923 101 7 0 chr3 16511278 16511417 -211013161 + AluSg/x SINE Alu 171 310 0 3223 151 8 6 chr3 16511418 16511934 -211012644 - MER41B LTR ERV1 -118 517 1 2207 110 0 3 chr3 16511957 16512267 -211012311 + AluSq SINE Alu 1 309 -4 2414 81 0 0 chr3 16512267 16512576 -211012002 + AluY SINE Alu 1 309 -2 1788 159 0 0 chr3 16512581 16512871 -211011707 + AluJo SINE Alu 2 291 -21 1585 216 162 2 chr3 16513589 16514034 -211010544 - L1ME3A LINE L1 -6 6164 5649 517 202 10 0 chr3 16514083 16514182 -211010396 + FLAM_A SINE Alu 26 125 -17 1383 133 5 0 chr3 16514846 16515041 -211009537 - MLT1A1 LTR MaLR 0 365 170 1460 186 16 11 chr3 16515041 16515340 -211009238 - MLT1A1 LTR MaLR 0 365 4 372 277 117 15 chr3 16515719 16515856 -211008722 + MIR SINE MIR 71 221 -41 1869 117 42 3 chr3 16516003 16516286 -211008292 + AluSg SINE Alu 1 294 -16 273 323 184 14 chr3 16517487 16517769 -211006809 + L2 LINE L2 2648 2977 -337 799 83 19 0 chr3 16517867 16517975 -211006603 - AluSp/q SINE Alu -15 298 189 441 136 0 0 chr3 16518220 16518286 -211006292 + MER5A DNA MER1_type 12 77 -112 2277 84 0 0 chr3 16518287 16518584 -211005994 + AluY SINE Alu 3 299 -12 3983 142 65 80 chr3 16518587 16518925 -211005653 + L1MB7 LINE L1 5323 5665 -519 1833 124 14 17 chr3 16518925 16519215 -211005363 - AluJb SINE Alu -23 289 1 492 18 0 0 chr3 16519215 16519272 -211005306 + (TG)n Simple_repeat Simple_repeat 1 57 0 3983 142 65 80 chr3 16519272 16519615 -211004963 + L1MB7 LINE L1 5664 5992 -192 2236 137 0 20 chr3 16519615 16519959 -211004619 + MER1B DNA MER1_type 1 337 0 3983 142 65 80 chr3 16519959 16520140 -211004438 + L1MB7 LINE L1 5992 6174 -10 1846 147 27 0 chr3 16520155 16520448 -211004130 + AluJo SINE Alu 1 301 -11 285 218 218 0 chr3 16520474 16520552 -211004026 - MIR SINE MIR -81 127 33 2468 62 0 0 chr3 16520573 16520879 -211003699 - AluY SINE Alu -5 306 1 2266 133 96 57 chr3 16520879 16520901 -211003677 - MER41B LTR ERV1 -165 470 450 1935 145 0 10 chr3 16520901 16521212 -211003366 - AluSx SINE Alu -4 308 1 2266 133 96 57 chr3 16521212 16521277 -211003301 - MER41B LTR ERV1 -185 450 389 2141 116 0 3 chr3 16521277 16521579 -211002999 - AluSx SINE Alu -11 301 1 2266 133 96 57 chr3 16521579 16521720 -211002858 - MER41B LTR ERV1 -246 389 255 706 122 7 108 chr3 16521720 16521868 -211002710 - FLAM_C SINE Alu 0 133 1 2266 133 96 57 chr3 16521868 16522086 -211002492 - MER41B LTR ERV1 -380 255 1 728 224 20 57 chr3 16522088 16522301 -211002277 + L1ME2 LINE L1 5951 6174 -10 2137 122 0 3 chr3 16522301 16522612 -211001966 - AluSx SINE Alu -2 310 1 728 224 20 57 chr3 16522612 16522623 -211001955 + L1ME2 LINE L1 6174 6184 0 1640 191 86 19 chr3 16523111 16523482 -211001096 + MSTD LTR MaLR 1 396 0 1722 164 3 0 chr3 16524046 16524062 -211000516 - AluJb SINE Alu -12 300 286 216 0 0 0 chr3 16524062 16524086 -211000492 + (CATTT)n Simple_repeat Simple_repeat 2 25 0 1722 164 3 0 chr3 16524086 16524368 -211000210 - AluJb SINE Alu -26 286 1 450 206 82 106 chr3 16524706 16524876 -210999702 + MIR SINE MIR 87 252 -10 188 338 14 27 chr3 16524890 16524964 -210999614 - L2 LINE L2 -26 3246 3174 225 309 43 0 chr3 16525698 16525792 -210998786 - MARNA DNA Mariner -11 575 478 1992 137 0 0 chr3 16525925 16526218 -210998360 - AluSx SINE Alu -19 293 1 458 287 30 12 chr3 16526276 16526440 -210998138 + MIR SINE MIR 50 216 -46 375 301 68 51 chr3 16526508 16526800 -210997778 - MARNA DNA Mariner -229 357 61 21 0 0 0 chr3 16526987 16527008 -210997570 + AT_rich Low_complexity Low_complexity 1 21 0 244 245 19 0 chr3 16528869 16528922 -210995656 + MLT1L LTR MaLR 2 55 -560 490 264 91 8 chr3 16528931 16529052 -210995526 - L2 LINE L2 0 3313 3183 363 298 46 69 chr3 16529115 16529377 -210995201 + MLT1L LTR MaLR 132 387 -228 198 0 0 0 chr3 16529508 16529530 -210995048 + (T)n Simple_repeat Simple_repeat 1 22 0 896 185 161 108 chr3 16529796 16530082 -210994496 + AluJo SINE Alu 1 301 -1 2003 113 3 13 chr3 16530197 16530498 -210994080 - AluSx SINE Alu -14 298 1 2279 99 0 0 chr3 16530499 16530801 -210993777 - AluSx SINE Alu -10 302 1 2069 108 0 0 chr3 16530953 16531253 -210993325 - AluSc SINE Alu 0 300 1 23 33 0 0 chr3 16531263 16531293 -210993285 + AT_rich Low_complexity Low_complexity 1 30 0 333 267 0 0 chr3 16531410 16531485 -210993093 + MIR3 SINE MIR 111 185 -23 608 122 20 20 chr3 16531841 16531939 -210992639 + MER4A LTR ERV1 1 98 -566 1850 131 9 25 chr3 16531940 16532290 -210992288 + MER4A LTR ERV1 262 664 0 575 91 0 61 chr3 16532495 16532594 -210991984 - AluSp/q SINE Alu -6 307 215 1826 161 50 35 chr3 16532594 16533046 -210991532 + LTR10B LTR ERV1 1 547 0 2435 211 64 32 chr3 16533046 16533804 -210990774 + LTR10B-int LTR ERV1 4 846 -6061 2190 249 11 8 chr3 16533839 16534360 -210990218 + LTR10B-int LTR ERV1 1114 1636 -5013 * 5109 113 33 19 chr3 16534354 16535140 -210989438 + LTR10B-int LTR ERV1 1871 2667 -3982 * 5302 275 57 40 chr3 16535125 16536937 -210987641 + LTR10B-int LTR ERV1 3124 4966 -2819 11068 216 22 29 chr3 16536987 16537412 -210987166 + LTR10B-int LTR ERV1 4229 4656 -1993 2285 55 3 55 chr3 16537412 16537740 -210986838 + AluY SINE Alu 1 311 0 11068 216 22 29 chr3 16537740 16538345 -210986233 + LTR10B-int LTR ERV1 4656 5264 -1385 2363 65 0 23 chr3 16538345 16538653 -210985925 - AluY SINE Alu -10 301 1 11068 216 22 29 chr3 16538653 16540060 -210984518 + LTR10B-int LTR ERV1 5264 6649 0 1799 199 51 27 chr3 16540060 16540510 -210984068 + LTR10B LTR ERV1 1 547 0 1481 123 9 0 chr3 16540510 16540722 -210983856 - AluSx SINE Alu -94 218 5 1233 133 0 33 chr3 16540796 16541006 -210983572 - AluJo SINE Alu -109 203 1 660 181 0 0 chr3 16541613 16541779 -210982799 + (TG)n Simple_repeat Simple_repeat 1 166 0 252 188 0 0 chr3 16541795 16541864 -210982714 + (TG)n Simple_repeat Simple_repeat 1 69 0 242 277 89 10 chr3 16541870 16541971 -210982607 + MIR SINE MIR 84 192 -70 331 229 9 101 chr3 16542283 16542392 -210982186 - MIR SINE MIR -73 135 37 1931 149 0 0 chr3 16542396 16542697 -210981881 - AluSx SINE Alu -11 301 1 932 212 15 30 chr3 16542703 16542906 -210981672 - MER20 DNA MER1_type 0 219 20 444 264 16 24 chr3 16542956 16543081 -210981497 + L3 LINE CR1 1344 1467 -110 261 200 0 0 chr3 16543179 16543224 -210981354 + L2 LINE L2 3251 3295 -18 1745 252 74 13 chr3 16543347 16543795 -210980783 + MLT1J LTR MaLR 37 511 0 212 339 132 23 chr3 16543976 16544150 -210980428 - L2 LINE L2 -214 3058 2866 300 330 19 10 chr3 16544429 16544532 -210980046 + L2 LINE L2 3163 3266 -6 2060 117 3 0 chr3 16544554 16544853 -210979725 + AluSx SINE Alu 1 300 -12 345 267 30 0 chr3 16545037 16545138 -210979440 + L1ME LINE L1 5639 5742 -379 1968 138 68 200 chr3 16545178 16545263 -210979315 - LTR12 LTR ERV1 -136 578 483 2317 77 3 3 chr3 16545263 16545573 -210979005 - AluY SINE Alu -1 310 1 1968 138 68 200 chr3 16545573 16545984 -210978594 - LTR12 LTR ERV1 -231 483 190 2260 77 0 7 chr3 16545984 16546282 -210978296 - AluY SINE Alu -15 296 1 1968 138 68 200 chr3 16546282 16546450 -210978128 - LTR12 LTR ERV1 -524 190 1 560 287 122 47 chr3 16547552 16547806 -210976772 - Charlie8 DNA MER1_type -2142 275 3 4335 187 69 12 chr3 16548325 16549514 -210975064 + L1MB7 LINE L1 4915 6183 -1 315 0 0 0 chr3 16549973 16550008 -210974570 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2391 80 0 6 chr3 16550069 16550380 -210974198 + AluSg SINE Alu 1 309 -1 24 53 0 0 chr3 16551307 16551345 -210973233 + AT_rich Low_complexity Low_complexity 1 38 0 198 167 0 0 chr3 16551404 16551440 -210973138 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 1669 131 54 0 chr3 16551593 16551877 -210972701 - AluSg SINE Alu 0 303 6 2663 245 63 27 chr3 16551897 16552794 -210971784 + L1MD1 LINE L1 16 1088 -5452 2300 82 0 0 chr3 16552817 16553111 -210971467 - AluY SINE Alu -17 294 1 449 220 53 0 chr3 16553117 16553267 -210971311 + L1MD1 LINE L1 1200 1357 -5186 208 203 17 17 chr3 16553682 16553741 -210970837 + GA-rich Low_complexity Low_complexity 2 60 0 2355 184 64 32 chr3 16554582 16555206 -210969372 + L1MD1 LINE L1 1303 1946 -4594 4920 197 41 14 chr3 16555210 16555753 -210968825 + L1MD1 LINE L1 4833 5360 -1393 2166 89 14 0 chr3 16555753 16556044 -210968534 + AluSc SINE Alu 1 295 -14 4920 197 41 14 chr3 16556044 16557242 -210967336 + L1MD1 LINE L1 5360 6753 0 278 182 61 30 chr3 16557277 16557343 -210967235 + MER5B DNA MER1_type 111 178 0 532 183 0 0 chr3 16557405 16557498 -210967080 - MER5A DNA MER1_type -86 103 11 198 344 21 52 chr3 16557501 16557693 -210966885 + MER5A DNA MER1_type 1 186 -3 314 285 49 24 chr3 16557975 16558098 -210966480 + L2 LINE L2 2579 2704 -610 729 255 142 71 chr3 16558106 16558557 -210966021 + MER113 DNA MER1_type? 6 488 -33 269 258 56 11 chr3 16558685 16558774 -210965804 + L2 LINE L2 2871 2963 -309 229 294 29 20 chr3 16558850 16558952 -210965626 + GA-rich Low_complexity Low_complexity 2 104 0 1879 135 24 7 chr3 16559107 16559404 -210965174 - AluSx SINE Alu -10 302 1 271 274 71 12 chr3 16559430 16559506 -210965072 + L2 LINE L2 3181 3261 -52 708 175 15 130 chr3 16559506 16559650 -210964928 - MER5B DNA MER1_type 0 178 62 751 232 20 0 chr3 16559650 16559801 -210964777 - FRAM SINE Alu -12 154 1 708 175 15 130 chr3 16559801 16559856 -210964722 - MER5B DNA MER1_type -116 62 2 196 283 35 97 chr3 16559986 16560099 -210964479 - L2 LINE L2 0 3272 3167 2168 94 3 0 chr3 16560453 16560752 -210963826 + AluSx SINE Alu 1 300 -12 447 239 183 7 chr3 16560906 16561048 -210963530 + L2 LINE L2 2591 2757 -557 2071 116 0 3 chr3 16561132 16561433 -210963145 - AluSx SINE Alu -10 302 3 307 322 43 54 chr3 16561895 16562153 -210962425 + L2 LINE L2 2852 3106 -166 1033 101 7 0 chr3 16562191 16562340 -210962238 + AluSg/x SINE Alu 137 286 -26 563 231 56 0 chr3 16562752 16562895 -210961683 + L1 LINE L1 4134 4284 -1862 388 280 86 23 chr3 16563142 16563317 -210961261 - MIR SINE MIR -49 213 28 2327 59 0 10 chr3 16563319 16563624 -210960954 - AluY SINE Alu -9 302 1 243 354 126 24 chr3 16563763 16563890 -210960688 + L2 LINE L2 3108 3247 -25 218 262 97 87 chr3 16564197 16564300 -210960278 + MIR3 SINE MIR 76 179 -29 2169 81 0 20 chr3 16564529 16564826 -210959752 - AluY SINE Alu -18 293 3 2427 78 0 0 chr3 16564828 16565135 -210959443 - AluSc SINE Alu -2 307 1 2567 150 7 72 chr3 16565964 16566472 -210958106 + L1MB3 LINE L1 5676 6148 -35 2092 108 3 10 chr3 16566472 16566769 -210957809 - AluSx SINE Alu -17 295 1 2567 150 7 72 chr3 16566769 16566801 -210957777 + L1MB3 LINE L1 6148 6181 -2 254 345 44 9 chr3 16567682 16567795 -210956783 - MIR SINE MIR -74 134 18 660 308 24 0 chr3 16567801 16568009 -210956569 - MIR SINE MIR -3 259 47 189 0 0 0 chr3 16568069 16568090 -210956488 + (A)n Simple_repeat Simple_repeat 1 21 0 2084 121 0 10 chr3 16568298 16568611 -210955967 - AluSg SINE Alu 0 310 1 485 206 22 59 chr3 16568617 16568753 -210955825 - L1MB3 LINE L1 -2 6181 6051 2039 106 3 3 chr3 16568854 16569167 -210955411 + AluSg SINE Alu 1 313 0 2133 113 3 3 chr3 16569167 16569478 -210955100 + AluSx SINE Alu 1 311 -1 2289 82 0 10 chr3 16569575 16569878 -210954700 - AluSg SINE Alu -10 300 1 501 305 26 13 chr3 16569946 16570179 -210954399 - L1MC5 LINE L1 -436 7525 7290 3406 156 11 58 chr3 16570294 16570499 -210954079 - L1MB2 LINE L1 -3 6168 5955 2166 98 3 0 chr3 16570499 16570795 -210953783 - AluSx SINE Alu -15 297 1 3406 156 11 58 chr3 16570795 16570816 -210953762 - L1MB2 LINE L1 -216 5955 5935 2018 108 0 40 chr3 16570816 16571141 -210953437 - AluSx SINE Alu 0 312 1 1886 155 0 3 chr3 16571143 16571446 -210953132 - AluSx SINE Alu -10 302 1 3406 156 11 58 chr3 16571446 16571875 -210952703 - L1MB2 LINE L1 -237 5934 5540 454 258 68 32 chr3 16571974 16572164 -210952414 + L1ME4a LINE L1 5717 5913 -208 2365 80 0 3 chr3 16572302 16572613 -210951965 + AluY SINE Alu 1 310 -1 386 278 89 39 chr3 16573102 16573282 -210951296 - MER117 DNA MER1_type -6 191 3 243 0 0 0 chr3 16573417 16573444 -210951134 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 186 281 18 0 chr3 16574204 16574261 -210950317 - MIR SINE MIR -6 256 199 1134 167 144 121 chr3 16574265 16574613 -210949965 + MLT1A1 LTR MaLR 4 359 -6 568 234 82 22 chr3 16575205 16575389 -210949189 + MIR SINE MIR 62 256 -6 360 296 127 32 chr3 16576162 16576351 -210948227 + MIR SINE MIR 27 233 -29 304 293 20 0 chr3 16577264 16577363 -210947215 - MER103 DNA DNA -50 116 16 2436 87 0 0 chr3 16577816 16578125 -210946453 - AluY SINE Alu -2 309 1 805 192 0 0 chr3 16578480 16578605 -210945973 - FLAM_A SINE Alu -7 126 2 2903 114 21 5 chr3 16578743 16579171 -210945407 + L1PA13 LINE L1 5718 6152 -11 680 155 0 106 chr3 16579355 16579497 -210945081 + FLAM_A SINE Alu 13 139 -3 22 0 0 0 chr3 16579625 16579647 -210944931 + AT_rich Low_complexity Low_complexity 1 22 0 231 103 0 0 chr3 16579647 16579686 -210944892 + (GA)n Simple_repeat Simple_repeat 2 40 0 2215 86 0 4 chr3 16579687 16579966 -210944612 - AluSc SINE Alu -31 278 1 1791 138 7 21 chr3 16580170 16580484 -210944094 + AluJb SINE Alu 7 316 0 226 222 0 0 chr3 16581582 16581627 -210942951 - L2 LINE L2 -18 3295 3251 321 315 52 95 chr3 16581697 16581830 -210942748 - L2 LINE L2 -42 3230 3093 2163 122 0 7 chr3 16581830 16582133 -210942445 + AluSq SINE Alu 1 301 -12 321 315 52 95 chr3 16582133 16582326 -210942252 - L2 LINE L2 -179 3093 2918 321 343 202 15 chr3 16582355 16582950 -210941628 - L2 LINE L2 -494 2820 2115 180 298 48 29 chr3 16582941 16583045 -210941533 - MIR3 SINE MIR -54 154 49 * 264 337 52 73 chr3 16583328 16583914 -210940664 - L2 LINE L2 -28 3244 2620 454 221 150 0 chr3 16584356 16584496 -210940082 - MIR SINE MIR -16 246 86 2458 91 0 0 chr3 16584525 16584834 -210939744 + AluSg SINE Alu 1 309 -1 1047 91 0 0 chr3 16585275 16585407 -210939171 + AluY SINE Alu 1 132 -179 303 274 142 18 chr3 16585699 16585812 -210938766 - L2 LINE L2 -1 3271 3145 1727 116 71 15 chr3 16586507 16586799 -210937779 - AluSq SINE Alu 0 307 1 212 152 0 0 chr3 16587064 16587097 -210937481 + MER5B DNA MER1_type 100 132 -46 1730 172 14 7 chr3 16587109 16587406 -210937172 + AluSg SINE Alu 1 299 -11 2302 95 30 0 chr3 16588035 16588339 -210936239 - AluSq SINE Alu 0 313 1 636 209 44 73 chr3 16589203 16589337 -210935241 + MER46C DNA MER2_type 5 132 -206 1561 197 7 7 chr3 16589337 16589616 -210934962 + AluJb SINE Alu 1 279 -33 636 209 44 73 chr3 16589616 16589687 -210934891 + MER46C DNA MER2_type 132 204 -134 1533 71 15 15 chr3 16590257 16590454 -210934124 + AluSc SINE Alu 99 295 -14 1774 143 38 0 chr3 16590522 16590809 -210933769 + L1MB2 LINE L1 5873 6170 -1 180 330 41 41 chr3 16592034 16592131 -210932447 - L2 LINE L2 -3 3269 3173 1870 159 0 17 chr3 16592190 16592491 -210932087 - AluSx SINE Alu -16 296 1 268 187 43 41 chr3 16592556 16592633 -210931945 - MIR SINE MIR -61 147 83 249 295 248 22 chr3 16592702 16592907 -210931671 - L2 LINE L2 -874 2440 2283 2292 130 42 11 chr3 16592907 16593261 -210931317 + MER47A DNA MER2_type 2 366 0 249 295 248 22 chr3 16593261 16593564 -210931014 - L2 LINE L2 -1031 2283 1817 313 330 133 6 chr3 16594618 16594791 -210929787 + MIR3 SINE MIR 14 208 0 214 225 12 88 chr3 16595112 16595192 -210929386 - L2 LINE L2 -2 3311 3238 266 163 138 12 chr3 16595405 16595485 -210929093 - MLT1J1 LTR MaLR 0 446 357 268 259 53 117 chr3 16595507 16595754 -210928824 - MLT1J2 LTR MaLR -153 297 67 2520 47 3 0 chr3 16595866 16596162 -210928416 + AluY SINE Alu 2 298 -13 2354 36 7 55 chr3 16596270 16596579 -210927999 + AluY SINE Alu 1 294 -17 366 284 11 11 chr3 16596699 16596794 -210927784 + L2 LINE L2 3170 3264 -8 1388 126 50 50 chr3 16597303 16597565 -210927013 - L1MB7 LINE L1 -13 6171 5910 186 293 12 61 chr3 16597573 16597655 -210926923 - MIR3 SINE MIR -125 83 6 310 220 83 46 chr3 16598937 16599046 -210925532 + MIR SINE MIR 1 113 -95 398 306 99 0 chr3 16601038 16601159 -210923419 + L2 LINE L2 3134 3266 -6 208 241 17 0 chr3 16602148 16602206 -210922372 + (CA)n Simple_repeat Simple_repeat 2 60 0 1889 144 32 0 chr3 16602356 16602640 -210921938 + AluJb SINE Alu 3 295 -17 2523 64 0 0 chr3 16603097 16603394 -210921184 - AluY SINE Alu -14 297 1 1851 137 27 23 chr3 16603784 16604083 -210920495 + AluSx SINE Alu 1 300 -12 1578 136 26 22 chr3 16604383 16604656 -210919922 + L1MB7 LINE L1 5895 6168 -16 340 292 84 40 chr3 16605304 16605530 -210919048 + MIR SINE MIR 13 248 -14 1558 194 11 3 chr3 16606078 16606362 -210918216 - AluJb SINE Alu -26 286 1 656 181 0 146 chr3 16606967 16607113 -210917465 + L1MB8 LINE L1 6003 6112 -66 1736 133 58 25 chr3 16607113 16607391 -210917187 + AluJb SINE Alu 1 287 -25 656 181 0 146 chr3 16607391 16607449 -210917129 + L1MB8 LINE L1 6112 6177 -1 4350 198 71 21 chr3 16608294 16609331 -210915247 - L1MC3 LINE L1 0 7785 6697 301 306 56 9 chr3 16609731 16609839 -210914739 - L2 LINE L2 -17 3255 3143 1415 276 109 12 chr3 16610455 16611068 -210913510 + L1ME3 LINE L1 5355 6029 -133 21 36 0 0 chr3 16611103 16611131 -210913447 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr3 16611584 16611614 -210912964 + AT_rich Low_complexity Low_complexity 1 30 0 197 307 0 34 chr3 16612182 16612270 -210912308 - MIR SINE MIR -72 190 106 260 185 0 0 chr3 16612276 16612330 -210912248 + L1MC4 LINE L1 6652 6705 -1337 2476 66 0 7 chr3 16612403 16612707 -210911871 - AluY SINE Alu -9 302 1 242 225 0 0 chr3 16612757 16612797 -210911781 + L2 LINE L2 3217 3256 -16 2060 121 7 0 chr3 16612919 16613201 -210911377 - AluSx SINE Alu -28 284 1 2103 106 17 0 chr3 16613333 16613626 -210910952 + AluSx SINE Alu 1 298 -14 1440 50 156 0 chr3 16613936 16614135 -210910443 + MER30 DNA MER1_type 1 230 0 182 300 64 18 chr3 16614184 16614294 -210910284 - MIR SINE MIR -29 233 119 1996 99 20 10 chr3 16614347 16614641 -210909937 - AluSg SINE Alu -13 297 1 323 114 0 0 chr3 16614641 16614685 -210909893 - Alu SINE Alu -264 44 1 1875 122 44 10 chr3 16614686 16614981 -210909597 - AluSx SINE Alu -7 305 1 2048 98 14 4 chr3 16616127 16616403 -210908175 - AluSg SINE Alu -31 279 1 2412 98 0 0 chr3 16616486 16616791 -210907787 - AluSq SINE Alu -8 305 1 324 285 189 65 chr3 16617749 16617977 -210906601 - L1MC/D LINE L1 -2002 5806 5608 2259 112 3 0 chr3 16617977 16618272 -210906306 - AluSx SINE Alu -16 296 1 324 285 189 65 chr3 16618272 16618534 -210906044 - L1MC/D LINE L1 -2200 5608 5255 273 287 167 60 chr3 16618698 16619628 -210904950 - L1MC/D LINE L1 -1162 4984 4155 1753 154 3 11 chr3 16619628 16619914 -210904664 + AluJb SINE Alu 1 284 -28 273 287 167 60 chr3 16619914 16620167 -210904411 - L1MC/D LINE L1 -1991 4155 3930 2393 59 0 13 chr3 16620167 16620470 -210904108 + AluY SINE Alu 1 299 -12 273 287 167 60 chr3 16620470 16620865 -210903713 - L1MC/D LINE L1 -2216 3930 3074 373 225 108 1 chr3 16621104 16621211 -210903367 - FLAM_A SINE Alu -6 127 23 1007 243 62 35 chr3 16621226 16621567 -210903011 - L1ME LINE L1 -305 5816 5467 477 316 15 0 chr3 16622183 16622319 -210902259 + MIR3 SINE MIR 68 205 -3 1970 93 48 110 chr3 16623290 16623646 -210900932 - LTR12 LTR ERV1 0 714 381 333 180 82 82 chr3 16623647 16623769 -210900809 - LTR30 LTR ERV1 -78 716 553 1753 195 215 12 chr3 16623769 16624277 -210900301 - pTR5 LTR ERV1 -433 2005 1395 256 231 0 0 chr3 16624277 16624329 -210900249 - LTR30 LTR ERV1 -670 52 1 1305 194 20 28 chr3 16624329 16624582 -210899996 + AluJb SINE Alu 31 281 -31 26 0 0 0 chr3 16624582 16624608 -210899970 + AT_rich Low_complexity Low_complexity 1 26 0 217 259 35 17 chr3 16625258 16625316 -210899262 - L2 LINE L2 -9 3304 3246 370 218 109 0 chr3 16625379 16625480 -210899098 - MLT1I LTR MaLR -25 384 273 409 301 32 19 chr3 16625640 16625796 -210898782 - MLT1H LTR MaLR -345 204 47 737 176 0 22 chr3 16625847 16625983 -210898595 + FLAM_C SINE Alu 1 133 0 188 316 0 18 chr3 16626033 16626090 -210898488 + MIR SINE MIR 34 89 -119 341 326 105 39 chr3 16626228 16626597 -210897981 - L2 LINE L2 -74 3198 2800 5748 54 6 3 chr3 16626893 16627616 -210896962 - L1PA5 LINE L1 -1 6153 5429 404 312 194 4 chr3 16627623 16627886 -210896692 - L2 LINE L2 -1 3312 3000 2267 83 3 10 chr3 16628201 16628501 -210896077 + AluSc SINE Alu 1 298 -11 2206 158 78 12 chr3 16628534 16628934 -210895644 + MSTB LTR MaLR 1 426 0 2278 91 0 3 chr3 16629407 16629714 -210894864 + AluSc SINE Alu 1 306 -3 485 303 44 50 chr3 16629761 16630101 -210894477 + L1MEc LINE L1 36 373 -6023 3118 210 104 27 chr3 16630340 16631354 -210893224 + L1ME2 LINE L1 5052 6157 -7 720 223 88 0 chr3 16631354 16631502 -210893076 - MER5B DNA MER1_type -17 161 1 185 310 0 0 chr3 16631799 16631857 -210892721 + L2 LINE L2 3254 3311 -2 1837 161 7 0 chr3 16632769 16633079 -210891499 + AluJo SINE Alu 1 312 0 264 222 74 0 chr3 16633901 16633955 -210890623 + L2 LINE L2 3185 3242 -71 488 245 75 0 chr3 16633967 16634126 -210890452 + L1ME4a LINE L1 5736 5906 -215 271 269 15 0 chr3 16634196 16634263 -210890315 + GA-rich Low_complexity Low_complexity 1 68 0 808 169 96 6 chr3 16634469 16634635 -210889943 + AluJ SINE Alu 1 181 -131 918 121 0 27 chr3 16634737 16634886 -210889692 + AluJ SINE Alu 168 312 0 292 139 23 0 chr3 16634900 16634943 -210889635 + AluSg/x SINE Alu 136 179 -123 355 38 57 0 chr3 16634963 16635016 -210889562 + L1MB7 LINE L1 6129 6184 0 455 284 74 62 chr3 16635034 16635193 -210889385 + MIR SINE MIR 1 166 -96 1841 155 3 7 chr3 16635193 16635503 -210889075 - AluSx SINE Alu -3 309 1 455 284 74 62 chr3 16635503 16635586 -210888992 + MIR SINE MIR 166 246 -16 740 141 76 65 chr3 16636372 16636440 -210888138 + MER53 DNA DNA 1 67 -122 2248 100 0 0 chr3 16636440 16636739 -210887839 - AluSg SINE Alu -11 299 1 740 141 76 65 chr3 16636739 16636854 -210887724 + MER53 DNA DNA 67 186 -3 821 223 51 59 chr3 16638325 16638398 -210886180 - MIR SINE MIR -8 254 182 2040 116 0 39 chr3 16638398 16638708 -210885870 - AluSp SINE Alu -15 298 1 821 223 51 59 chr3 16638708 16638890 -210885688 - MIR SINE MIR -80 182 1 391 200 14 0 chr3 16639540 16639610 -210884968 - MIR SINE MIR -113 149 79 538 315 55 14 chr3 16640158 16640377 -210884201 + MIR SINE MIR 21 248 -14 211 279 69 30 chr3 16640833 16640977 -210883601 - MIR3 SINE MIR -47 161 38 2311 83 0 3 chr3 16641094 16641395 -210883183 + AluSg SINE Alu 1 300 -10 405 0 0 0 chr3 16642128 16642173 -210882405 + (TG)n Simple_repeat Simple_repeat 2 46 0 207 256 135 113 chr3 16642582 16642715 -210881863 + MIR3 SINE MIR 2 137 -71 578 269 36 43 chr3 16643063 16643316 -210881262 - L1ME3A LINE L1 -43 6127 5877 234 191 0 0 chr3 16643389 16643436 -210881142 + A-rich Low_complexity Low_complexity 1 47 0 567 135 33 2 chr3 16643669 16643915 -210880663 + AluJo SINE Alu 1 300 -12 200 238 0 0 chr3 16644632 16644674 -210879904 - MIR SINE MIR -140 122 81 4917 55 38 16 chr3 16644795 16645796 -210878782 - MER11A LTR ERVK -87 1179 1 256 296 35 61 chr3 16645848 16645963 -210878615 - L2 LINE L2 -1 3271 3160 431 311 85 85 chr3 16645983 16646324 -210878254 - L2 LINE L2 -1 3271 2931 394 253 50 33 chr3 16646481 16646656 -210877922 + MER20B DNA MER1_type 43 213 -6 2162 93 0 32 chr3 16646722 16647035 -210877543 + AluSg SINE Alu 1 303 -7 214 383 78 23 chr3 16647208 16647336 -210877242 + L2 LINE L2 3136 3270 -2 1444 108 9 14 chr3 16647357 16647579 -210876999 - AluSg/x SINE Alu -4 308 88 664 279 123 5 chr3 16647613 16647817 -210876761 - MIR SINE MIR -15 247 20 595 259 80 22 chr3 16647831 16648055 -210876523 - L3 LINE CR1 -707 870 634 180 337 58 35 chr3 16648065 16648151 -210876427 + L2 LINE L2 3177 3264 -8 610 343 104 24 chr3 16648152 16648487 -210876091 - L3 LINE CR1 -909 668 307 445 218 53 68 chr3 16648488 16648621 -210875957 + MER91B DNA MER1_type 2 132 -58 345 284 42 0 chr3 16648636 16648731 -210875847 + MER91B DNA MER1_type 90 188 -2 2161 90 10 13 chr3 16648809 16649121 -210875457 + AluSq SINE Alu 1 311 -2 552 289 64 60 chr3 16650673 16650922 -210873656 - MIR SINE MIR -6 256 7 1994 115 20 3 chr3 16650976 16651271 -210873307 + AluSx SINE Alu 5 304 -8 1612 185 13 7 chr3 16651864 16652167 -210872411 - AluJo SINE Alu -7 305 1 2261 65 0 14 chr3 16652167 16652457 -210872121 - AluY SINE Alu -15 296 11 180 0 0 0 chr3 16652457 16652477 -210872101 + (T)n Simple_repeat Simple_repeat 1 20 0 1568 136 53 40 chr3 16652489 16652790 -210871788 - AluJb SINE Alu -7 305 1 861 199 46 23 chr3 16652816 16653032 -210871546 - L1ME3 LINE L1 -22 6140 5920 297 266 0 0 chr3 16653087 16653166 -210871412 - L1MC4 LINE L1 -1 8041 7963 1198 246 80 12 chr3 16653182 16653519 -210871059 - L1MC4 LINE L1 -329 7713 7354 1749 141 3 46 chr3 16653852 16654219 -210870359 - AluJb SINE Alu 0 353 1 716 184 8 0 chr3 16654252 16654377 -210870201 - FLAM_C SINE Alu -17 126 1 849 213 102 10 chr3 16655234 16655431 -210869147 + MER58C DNA MER1_type 1 215 0 315 318 18 32 chr3 16655681 16655961 -210868617 - AluSp SINE Alu -88 215 1 2224 201 36 73 chr3 16656187 16656583 -210867995 - L1MC5 LINE L1 -132 7829 7420 1551 175 46 0 chr3 16656583 16656868 -210867710 + AluJo SINE Alu 1 298 -14 2224 201 36 73 chr3 16656868 16656990 -210867588 - L1MC5 LINE L1 -541 7420 7295 1348 211 6 30 chr3 16656990 16657322 -210867256 + MER33 DNA MER1_type 1 324 0 2224 201 36 73 chr3 16657322 16657554 -210867024 - L1MC5 LINE L1 -666 7295 7106 353 282 102 53 chr3 16657575 16657781 -210866797 + L2 LINE L2 3027 3242 -71 358 281 47 31 chr3 16657831 16657959 -210866619 + MIR3 SINE MIR 3 132 -76 325 259 12 0 chr3 16658576 16658661 -210865917 - MIR SINE MIR -114 148 63 350 273 13 0 chr3 16658677 16658754 -210865824 - L2 LINE L2 0 3272 3195 2565 86 28 25 chr3 16658871 16659233 -210865345 - THE1B LTR MaLR 0 364 2 341 241 125 0 chr3 16659437 16659549 -210865029 - L2 LINE L2 -3 3310 3185 347 274 28 57 chr3 16659564 16659670 -210864908 + MER91C DNA MER1_type 36 138 -2 458 210 68 56 chr3 16659674 16659836 -210864742 - L2 LINE L2 -123 3190 3027 246 206 206 9 chr3 16659837 16659944 -210864634 - LTR33 LTR ERVL -1 520 393 492 242 57 41 chr3 16660032 16660226 -210864352 - LTR33 LTR ERVL -308 213 17 806 265 131 26 chr3 16660424 16660886 -210863692 - L2 LINE L2 -316 2997 2479 3040 112 0 18 chr3 16660886 16661322 -210863256 + MSTC LTR MaLR 1 428 0 806 265 131 26 chr3 16661322 16661351 -210863227 - L2 LINE L2 -834 2479 2454 597 198 55 93 chr3 16661506 16661763 -210862815 + L1MC5 LINE L1 7670 7916 -45 2065 99 0 3 chr3 16661791 16662128 -210862450 + AluSx SINE Alu 1 336 0 222 222 37 19 chr3 16662157 16662211 -210862367 + MIR3 SINE MIR 150 204 -4 4334 153 27 10 chr3 16662279 16663046 -210861532 - L1MC1 LINE L1 -9 6324 5545 2692 221 25 0 chr3 16663056 16663661 -210860917 - L1MC1 LINE L1 -1010 5136 4517 816 305 111 32 chr3 16663845 16664286 -210860292 - L2 LINE L2 0 3272 2792 439 323 120 5 chr3 16664318 16664510 -210860068 - MIR SINE MIR -28 234 21 894 230 31 5 chr3 16665061 16665257 -210859321 + MIR SINE MIR 31 231 -31 2221 90 7 3 chr3 16665343 16665642 -210858936 - AluSg SINE Alu -10 300 1 2093 108 0 10 chr3 16665798 16666094 -210858484 - AluSx SINE Alu -14 298 6 392 274 222 19 chr3 16666234 16666452 -210858126 - MIR SINE MIR -1 261 5 222 291 68 86 chr3 16666434 16666888 -210857690 - L2 LINE L2 -20 3252 2807 * 354 310 16 82 chr3 16666923 16666964 -210857614 + MIR SINE MIR 12 54 -208 2276 63 3 20 chr3 16666964 16667266 -210857312 + AluY SINE Alu 1 297 -14 354 310 16 82 chr3 16667266 16667408 -210857170 + MIR SINE MIR 54 183 -79 1909 148 7 3 chr3 16667824 16668129 -210856449 - AluSx SINE Alu -6 306 1 469 311 106 18 chr3 16668204 16668535 -210856043 - L1ME4a LINE L1 -75 6046 5687 361 245 93 7 chr3 16668545 16668684 -210855894 - L1ME4a LINE L1 -471 5650 5500 1522 173 14 51 chr3 16668784 16669079 -210855499 - AluJo SINE Alu -23 289 6 782 216 37 32 chr3 16669237 16669427 -210855151 - MLT1A2 LTR MaLR 0 374 184 207 175 25 0 chr3 16669459 16669499 -210855079 - MIR SINE MIR -109 153 113 375 293 186 30 chr3 16669673 16669787 -210854791 + MIR SINE MIR 14 109 -153 1788 145 7 13 chr3 16669787 16670090 -210854488 + AluJb SINE Alu 1 301 -11 375 293 186 30 chr3 16670090 16670178 -210854400 + MIR SINE MIR 109 248 -14 1830 165 0 3 chr3 16670187 16670490 -210854088 + AluJb SINE Alu 1 302 -10 684 287 120 57 chr3 16670620 16670986 -210853592 - L2 LINE L2 0 3313 2925 321 241 131 44 chr3 16671532 16671669 -210852909 + MER5A DNA MER1_type 3 151 -38 194 235 0 0 chr3 16672402 16672436 -210852142 + MIR SINE MIR 3 36 -226 1339 250 120 28 chr3 16672443 16672972 -210851606 + L2 LINE L2 2741 3313 0 312 167 61 15 chr3 16672992 16673058 -210851520 + MIR SINE MIR 56 124 -138 1134 167 144 121 chr3 16673105 16673453 -210851125 - MLT1A1 LTR MaLR -6 359 4 186 281 18 0 chr3 16673457 16673514 -210851064 + MIR SINE MIR 199 256 -6 243 0 0 0 chr3 16674276 16674303 -210850275 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 386 278 89 39 chr3 16674438 16674618 -210849960 + MER117 DNA MER1_type 3 191 -6 2140 123 3 0 chr3 16675107 16675417 -210849161 - AluSx SINE Alu -1 311 1 364 223 190 58 chr3 16675481 16675602 -210848976 + MER5A DNA MER1_type 32 168 -21 238 360 117 14 chr3 16676112 16676326 -210848252 - L2 LINE L2 -508 2806 2571 366 217 43 0 chr3 16677034 16677126 -210847452 + MER112 DNA MER1_type 158 253 -7 249 250 0 0 chr3 16677529 16677589 -210846989 - L1ME LINE L1 -453 5668 5609 1788 160 14 0 chr3 16677589 16677877 -210846701 + AluJo SINE Alu 1 292 -20 832 246 14 19 chr3 16677902 16678113 -210846465 + MER63A DNA MER1_type 1 210 0 317 233 110 0 chr3 16678941 16679014 -210845564 - MIR SINE MIR -101 107 27 24 32 0 0 chr3 16679014 16679045 -210845533 + AT_rich Low_complexity Low_complexity 1 31 0 196 293 17 0 chr3 16679535 16679593 -210844985 - MIR3 SINE MIR -39 169 111 2091 144 35 9 chr3 16679679 16680018 -210844560 + MER7A DNA MER2_type 1 346 0 2219 94 3 0 chr3 16680162 16680459 -210844119 + AluSp SINE Alu 1 298 -15 336 226 12 29 chr3 16680461 16680564 -210844014 - MIR SINE MIR -64 144 45 2317 90 0 0 chr3 16681060 16681371 -210843207 - AluY SINE Alu 0 311 1 249 283 170 28 chr3 16681893 16681999 -210842579 - L2 LINE L2 -2 3270 3150 234 303 23 80 chr3 16682176 16682351 -210842227 - MER5A DNA MER1_type -18 171 7 850 205 0 0 chr3 16682382 16682538 -210842040 + MER5B DNA MER1_type 21 176 -2 510 210 150 54 chr3 16682562 16682729 -210841849 - MER5A DNA MER1_type 0 189 7 272 213 13 80 chr3 16682853 16682928 -210841650 - MER5A DNA MER1_type -22 167 98 425 240 109 23 chr3 16682929 16683104 -210841474 - MIR SINE MIR -4 258 69 370 308 49 11 chr3 16683423 16683578 -210841000 + L1ME4a LINE L1 5731 5902 -219 1595 142 0 54 chr3 16683578 16683894 -210840684 + AluSx SINE Alu 1 299 -13 370 308 49 11 chr3 16683894 16684001 -210840577 + L1ME4a LINE L1 5902 6003 -118 249 244 162 41 chr3 16684760 16684905 -210839673 + MIR SINE MIR 35 194 -63 306 314 177 24 chr3 16685299 16685547 -210839031 - L3 LINE CR1 -89 1488 1203 469 234 63 18 chr3 16685567 16685678 -210838900 + L2 LINE L2 3198 3313 0 323 248 119 10 chr3 16685680 16685781 -210838797 - L2 LINE L2 -12 3301 3190 377 322 125 56 chr3 16686221 16686612 -210837966 - L2 LINE L2 -11 3261 2844 481 209 128 36 chr3 16686644 16686859 -210837719 + MIR SINE MIR 6 260 -2 490 301 100 18 chr3 16686902 16687181 -210837397 - L2 LINE L2 -553 2761 2460 2167 78 0 33 chr3 16687363 16687669 -210836909 - AluY SINE Alu -7 304 9 208 293 121 36 chr3 16687867 16688007 -210836571 - L3 LINE CR1 -408 1169 1018 400 266 50 14 chr3 16688521 16688660 -210835918 + L2 LINE L2 3158 3301 -12 187 333 83 0 chr3 16689117 16689201 -210835377 + MIR SINE MIR 56 146 -116 976 180 0 0 chr3 16689825 16689986 -210834592 + FRAM SINE Alu 2 162 -14 225 0 0 0 chr3 16690137 16690162 -210834416 + (CA)n Simple_repeat Simple_repeat 2 26 0 1160 224 14 18 chr3 16690162 16690439 -210834139 - AluSg SINE Alu -17 293 18 281 333 64 30 chr3 16690441 16690582 -210833996 - MIR SINE MIR -66 142 1 506 277 70 76 chr3 16690605 16690948 -210833630 + L2 LINE L2 2921 3261 -11 1134 247 125 23 chr3 16691071 16691603 -210832975 + MLT1L LTR MaLR 1 612 -3 340 335 178 4 chr3 16691695 16691925 -210832653 + L2 LINE L2 3002 3271 -1 341 250 0 0 chr3 16692014 16692082 -210832496 + MIR3 SINE MIR 93 160 -48 505 289 232 42 chr3 16692768 16693901 -210830677 - L2 LINE L2 -642 2672 1325 217 286 121 36 chr3 16694024 16694164 -210830414 + L3 LINE CR1 1018 1169 -408 2142 82 0 33 chr3 16694362 16694668 -210829910 + AluY SINE Alu 9 304 -7 490 301 100 18 chr3 16694850 16695129 -210829449 + L2 LINE L2 2460 2761 -553 481 209 128 36 chr3 16695172 16695387 -210829191 - MIR SINE MIR -2 260 6 628 301 119 39 chr3 16695419 16695805 -210828773 + L2 LINE L2 2844 3260 -12 186 281 157 11 chr3 16696076 16696165 -210828413 + L2 LINE L2 2998 3099 -214 323 248 119 10 chr3 16696246 16696347 -210828231 + L2 LINE L2 3190 3301 -12 469 234 63 18 chr3 16696349 16696460 -210828118 - L2 LINE L2 0 3313 3198 306 314 177 24 chr3 16696480 16696728 -210827850 + L3 LINE CR1 1203 1488 -89 267 245 185 40 chr3 16697122 16697273 -210827305 - MIR SINE MIR -68 194 22 190 205 26 0 chr3 16698128 16698167 -210826411 - L2 LINE L2 -39 3274 3235 296 284 181 16 chr3 16698270 16698397 -210826181 - MIR SINE MIR -36 226 79 2675 16 0 3 chr3 16698493 16698805 -210825773 + AluYa5 SINE Alu 1 311 0 1433 231 71 37 chr3 16698851 16699341 -210825237 + MLT1E2 LTR MaLR 1 505 0 291 255 2 0 chr3 16699341 16699425 -210825153 - MIR SINE MIR -80 128 43 463 264 76 100 chr3 16699528 16699778 -210824800 + MIR SINE MIR 2 245 -17 291 235 183 11 chr3 16699848 16700001 -210824577 - MIR SINE MIR -63 145 4 182 306 129 20 chr3 16700185 16700332 -210824246 - L2 LINE L2 -5 3267 3105 880 242 175 25 chr3 16700465 16701025 -210823553 - L2 LINE L2 -166 3147 2501 241 322 22 11 chr3 16701346 16701436 -210823142 - L2 LINE L2 -9 3263 3173 4162 33 19 0 chr3 16701483 16701964 -210822614 - LTR2B LTR ERV1 0 490 1 592 250 79 7 chr3 16702303 16702455 -210822123 + MER5B DNA MER1_type 15 177 -1 294 29 0 0 chr3 16702765 16702800 -210821778 + (GA)n Simple_repeat Simple_repeat 2 36 0 318 257 43 0 chr3 16703033 16703103 -210821475 - LTR16B LTR ERVL -6 458 386 321 276 13 0 chr3 16703121 16703197 -210821381 - L2 LINE L2 -33 3239 3163 522 246 23 0 chr3 16703265 16703395 -210821183 + MER94 DNA DNA 1 133 -1 196 375 45 0 chr3 16703406 16703494 -210821084 - L2 LINE L2 -199 3073 2982 244 128 85 0 chr3 16703818 16703865 -210820713 - L1MB3 LINE L1 -1 6182 6132 2239 85 0 3 chr3 16703865 16704160 -210820418 - AluSg SINE Alu -14 296 3 1812 243 53 13 chr3 16704160 16704629 -210819949 + L1ME1 LINE L1 5595 6082 -84 4125 234 49 92 chr3 16704660 16706048 -210818530 + L1M4 LINE L1 3047 4493 -1653 1534 176 10 23 chr3 16706048 16706349 -210818229 - AluJo SINE Alu -15 297 1 4125 234 49 92 chr3 16706349 16706422 -210818156 + L1M4 LINE L1 4493 4568 -1578 329 43 22 0 chr3 16706422 16706468 -210818110 - MADE1 DNA Mariner -1 79 33 233 185 0 19 chr3 16706477 16706531 -210818047 + HSMAR1 DNA Mariner 1235 1287 0 4125 234 49 92 chr3 16706531 16707051 -210817527 + L1M4 LINE L1 4576 5047 -1099 3586 214 43 8 chr3 16707044 16708000 -210816578 + L1 LINE L1 2346 3334 -2812 * 241 200 0 17 chr3 16708011 16708071 -210816507 + L1 LINE L1 3642 3700 -2446 * 4663 154 82 35 chr3 16708043 16708578 -210816000 + L1MA8 LINE L1 3906 4414 -1732 849 213 6 12 chr3 16708578 16708738 -210815840 + FAM SINE Alu 1 159 -16 4663 154 82 35 chr3 16708738 16709236 -210815342 + L1MA8 LINE L1 4414 4988 -1158 1010 193 54 40 chr3 16709279 16709597 -210814981 - MLT2B3 LTR ERVL 0 554 228 625 71 0 0 chr3 16709594 16709678 -210814900 - MLT2A2 LTR ERVL -369 84 1 * 4459 145 17 36 chr3 16709679 16709911 -210814667 + L1MA8 LINE L1 5096 5331 -960 2228 100 0 13 chr3 16709911 16710221 -210814357 + AluY SINE Alu 1 306 -5 4459 145 17 36 chr3 16710221 16710510 -210814068 + L1MA8 LINE L1 5331 5624 -667 1824 134 0 10 chr3 16710510 16710830 -210813748 + AluY SINE Alu 1 311 0 4459 145 17 36 chr3 16710830 16711176 -210813402 + L1MA8 LINE L1 5624 5951 -340 2048 113 16 19 chr3 16711176 16711487 -210813091 + AluSg SINE Alu 1 310 0 4459 145 17 36 chr3 16711487 16711567 -210813011 + L1MA8 LINE L1 5951 6031 -260 1779 204 16 64 chr3 16711566 16712189 -210812389 + L1 LINE L1 3684 4242 -1904 * 605 168 16 0 chr3 16712195 16712320 -210812258 + GA-rich Low_complexity Low_complexity 2 128 0 360 155 0 0 chr3 16712750 16712821 -210811757 + T-rich Low_complexity Low_complexity 1 71 0 980 242 92 84 chr3 16713297 16713681 -210810897 + L2 LINE L2 2649 3044 -269 1991 132 0 3 chr3 16713681 16713976 -210810602 - AluSg SINE Alu -16 294 1 980 242 92 84 chr3 16713976 16714244 -210810334 + L2 LINE L2 3044 3308 -5 395 274 32 24 chr3 16714272 16714396 -210810182 - MIR SINE MIR -66 142 18 257 295 13 26 chr3 16714468 16714546 -210810032 + MIR3 SINE MIR 15 91 -117 253 284 25 12 chr3 16714652 16714733 -210809845 + MIR SINE MIR 2 83 -179 2229 202 81 16 chr3 16714778 16715284 -210809294 + MLT1F LTR MaLR 4 542 0 461 231 0 28 chr3 16715335 16715443 -210809135 - MIR SINE MIR -71 191 87 298 247 43 21 chr3 16715833 16715926 -210808652 - MIR SINE MIR -120 142 48 487 308 91 0 chr3 16716446 16716589 -210807989 + MER91A DNA MER1_type 1 156 -40 1671 191 112 32 chr3 16716591 16717030 -210807548 - L1MB7 LINE L1 0 6184 5711 2148 105 0 0 chr3 16717030 16717325 -210807253 + AluSx SINE Alu 1 295 -17 447 239 183 7 chr3 16717484 16717626 -210806952 + L2 LINE L2 2591 2757 -557 2008 126 0 3 chr3 16717710 16718012 -210806566 - AluSx SINE Alu -11 301 1 307 322 43 54 chr3 16718471 16718729 -210805849 + L2 LINE L2 2852 3106 -166 1033 101 7 0 chr3 16718767 16718916 -210805662 + AluSg/x SINE Alu 137 286 -26 563 231 56 0 chr3 16719328 16719471 -210805107 + L1 LINE L1 4134 4284 -1862 388 280 86 23 chr3 16719718 16719893 -210804685 - MIR SINE MIR -49 213 28 2039 112 3 3 chr3 16719895 16720198 -210804380 - AluSx SINE Alu -9 303 1 851 98 8 0 chr3 16720199 16720322 -210804256 + MER41A LTR ERV1 431 554 0 290 217 152 0 chr3 16720330 16720422 -210804156 - L1ME3A LINE L1 -217 5953 5848 264 240 0 0 chr3 16720600 16720650 -210803928 + MER92B LTR ERV1 1 50 -586 2073 114 27 0 chr3 16720668 16720941 -210803637 + AluSx SINE Alu 1 265 -47 300 27 0 0 chr3 16720941 16720978 -210803600 + (TC)n Simple_repeat Simple_repeat 1 37 0 * 360 0 0 0 chr3 16720977 16721017 -210803561 + (CA)n Simple_repeat Simple_repeat 1 40 0 2073 114 27 0 chr3 16720978 16721041 -210803537 + AluSx SINE Alu 265 306 -6 591 144 48 0 chr3 16721041 16721145 -210803433 - MER41B LTR ERV1 -12 623 515 2056 117 7 3 chr3 16721145 16721453 -210803125 + AluSx SINE Alu 1 309 -3 583 144 0 41 chr3 16721453 16721550 -210803028 + AluSg/x SINE Alu 108 200 -112 923 101 7 0 chr3 16721559 16721698 -210802880 + AluSg/x SINE Alu 171 310 0 3223 151 8 6 chr3 16721699 16722215 -210802363 - MER41B LTR ERV1 -118 517 1 2207 110 0 3 chr3 16722238 16722548 -210802030 + AluSq SINE Alu 1 309 -4 2414 81 0 0 chr3 16722548 16722857 -210801721 + AluY SINE Alu 1 309 -2 1878 153 0 6 chr3 16722862 16723175 -210801403 + AluJo SINE Alu 2 312 0 1997 219 46 40 chr3 16723177 16723461 -210801117 + MER92B LTR ERV1 55 345 -291 1241 179 88 107 chr3 16723461 16723918 -210800660 - LTR7 LTR ERV1 -2 448 1 1997 219 46 40 chr3 16723918 16724154 -210800424 + MER92B LTR ERV1 345 578 -58 2692 13 0 3 chr3 16724196 16724507 -210800071 - AluYa5 SINE Alu -1 310 1 296 284 181 16 chr3 16724603 16724730 -210799848 + MIR SINE MIR 79 226 -36 190 205 26 0 chr3 16724833 16724872 -210799706 + L2 LINE L2 3235 3274 -39 2424 104 0 3 chr3 16726425 16726733 -210797845 - AluSq SINE Alu -2 311 5 1331 133 0 33 chr3 16726807 16727017 -210797561 - AluJo SINE Alu -109 203 1 181 291 89 13 chr3 16727552 16727631 -210796947 + MIR3 SINE MIR 5 89 -119 249 197 0 0 chr3 16727631 16727697 -210796881 + (TG)n Simple_repeat Simple_repeat 2 67 0 443 267 10 0 chr3 16727836 16727937 -210796641 - MIR SINE MIR -107 155 54 8555 217 9 34 chr3 16728347 16729754 -210794824 - LTR7-int LTR ERV1 0 6649 5304 2475 65 0 26 chr3 16729754 16730063 -210794515 + AluY SINE Alu 1 301 -10 8555 217 9 34 chr3 16730063 16730657 -210793921 - LTR7-int LTR ERV1 -1345 5304 4697 2284 60 0 57 chr3 16730695 16730994 -210793584 - AluY SINE Alu -27 284 3 441 136 0 0 chr3 16730995 16731061 -210793517 - MER5A DNA MER1_type -112 77 12 832 83 19 0 chr3 16731306 16731414 -210793164 + AluSp/q SINE Alu 189 298 -15 304 323 184 14 chr3 16731512 16731794 -210792784 - L2 LINE L2 -337 2977 2648 1691 182 40 3 chr3 16782558 16782882 -210741696 - MER1B DNA MER1_type 0 337 2 391 293 32 32 chr3 16782963 16783086 -210741492 - MIR3 SINE MIR -41 167 45 2159 82 0 0 chr3 16783087 16783366 -210741212 + AluY SINE Alu 1 279 -32 550 281 74 48 chr3 16783573 16783804 -210740774 - L2 LINE L2 -779 2535 2299 187 327 19 93 chr3 16783804 16783911 -210740667 - L2 LINE L2 -1987 1327 1229 375 358 64 5 chr3 16784218 16784405 -210740173 - MIR SINE MIR -10 252 55 1195 169 0 0 chr3 16784663 16784870 -210739708 - AluSg/x SINE Alu -2 310 104 731 164 0 0 chr3 16785001 16785123 -210739455 + AluSg/x SINE Alu 184 305 -7 1601 176 64 7 chr3 16785591 16785886 -210738692 - AluJb SINE Alu 0 312 1 1581 219 70 10 chr3 16786170 16786558 -210738020 - Tigger1 DNA MER2_type -2007 411 1 11215 53 7 50 chr3 16788032 16789774 -210734804 - L1P LINE L1 -2265 3881 2215 3543 174 79 45 chr3 16790164 16791076 -210733502 - L1MB3 LINE L1 -10 6173 5215 2378 85 13 0 chr3 16791076 16791381 -210733197 + AluSc SINE Alu 1 309 0 3543 174 79 45 chr3 16791381 16791545 -210733033 - L1MB3 LINE L1 -968 5215 5058 416 109 118 8 chr3 16791688 16791807 -210732771 - THE1B-int LTR MaLR -1448 132 1 2064 155 25 19 chr3 16791807 16792169 -210732409 - THE1B LTR MaLR 0 364 1 276 152 22 0 chr3 16792169 16792215 -210732363 - Alu SINE Alu -261 47 1 3013 222 27 20 chr3 16792216 16792477 -210732101 - L1MCa LINE L1 -750 5894 5636 2058 173 34 29 chr3 16792477 16792893 -210731685 + MER47B DNA MER2_type 1 418 0 3013 222 27 20 chr3 16792893 16793515 -210731063 - L1MCa LINE L1 -1008 5636 5005 1861 196 63 68 chr3 16794200 16794834 -210729744 - L1MC4 LINE L1 -8 8034 7404 722 195 27 0 chr3 16795088 16795237 -210729341 - AluSx SINE Alu -159 153 1 1555 245 35 35 chr3 16795272 16795807 -210728771 - L1MCa LINE L1 -1843 4801 4267 2430 154 61 11 chr3 16795807 16796267 -210728311 - Tigger3b DNA MER2_type 0 1231 749 309 232 26 15 chr3 16796532 16796624 -210727954 - MER5A DNA MER1_type -73 116 14 399 127 0 0 chr3 16797214 16797277 -210727301 + (CA)n Simple_repeat Simple_repeat 1 63 0 408 260 99 28 chr3 16797441 16797622 -210726956 + L1ME1 LINE L1 5968 6161 -5 180 0 0 0 chr3 16798928 16798948 -210725630 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 242 308 58 10 chr3 16799621 16799725 -210724853 + MIR3 SINE MIR 54 162 -46 249 261 23 57 chr3 16800863 16800951 -210723627 - MIR SINE MIR -79 183 99 212 158 0 26 chr3 16801279 16801317 -210723261 + CT-rich Low_complexity Low_complexity 4 40 0 2083 91 33 0 chr3 16801723 16802027 -210722551 - AluSx SINE Alu 0 313 1 647 232 100 0 chr3 16802481 16802539 -210722039 - L1MC4 LINE L1 -1481 6561 6510 1730 99 0 21 chr3 16802539 16802781 -210721797 - AluSg SINE Alu -73 237 1 647 232 100 0 chr3 16802781 16802912 -210721666 - L1MC4 LINE L1 -1532 6510 6353 646 206 19 26 chr3 16802917 16803072 -210721506 - L1ME2 LINE L1 -13 6151 5998 1235 176 59 29 chr3 16803711 16803983 -210720595 + AluJb SINE Alu 1 280 -32 3187 123 97 19 chr3 16804576 16805194 -210719384 - Tigger3b DNA MER2_type -565 666 1 3698 236 70 24 chr3 16805194 16806869 -210717709 - L1MCa LINE L1 -2376 4268 2527 35 0 0 0 chr3 16806875 16806910 -210717668 + AT_rich Low_complexity Low_complexity 1 35 0 1398 127 100 27 chr3 16807030 16807330 -210717248 - THE1C LTR MaLR -53 322 1 2062 127 0 7 chr3 16807536 16807836 -210716742 + AluSx SINE Alu 1 298 -14 868 161 75 11 chr3 16808835 16809021 -210715557 - Tigger1 DNA MER2_type 0 2418 2221 273 278 56 0 chr3 16809591 16809681 -210714897 + MARNA DNA Mariner 250 344 -242 185 206 88 29 chr3 16809981 16810049 -210714529 + MIR SINE MIR 82 153 -109 1698 184 35 70 chr3 16810091 16810246 -210714332 + L1MB8 LINE L1 5119 5278 -906 738 197 0 0 chr3 16810246 16810378 -210714200 + FLAM_A SINE Alu 1 132 -1 1698 184 35 70 chr3 16810378 16810772 -210713806 + L1MB8 LINE L1 5278 5654 -530 332 167 0 0 chr3 16810772 16810826 -210713752 + MER66A LTR ERV1 287 340 -138 1943 160 61 40 chr3 16810855 16811379 -210713199 + L1MB8 LINE L1 5644 6178 0 890 132 44 0 chr3 16812227 16812386 -210712192 + MER41E LTR ERV1 10 175 -337 271 137 59 0 chr3 16812385 16812436 -210712142 + AluJb SINE Alu 79 132 -170 * 21 71 0 0 chr3 16812524 16812566 -210712012 + AT_rich Low_complexity Low_complexity 1 42 0 289 289 0 0 chr3 16812892 16812996 -210711582 - L1MB8 LINE L1 -3 6175 6072 269 185 77 0 chr3 16813008 16813073 -210711505 - L2 LINE L2 -1422 1892 1823 2078 123 3 10 chr3 16813893 16814202 -210710376 - AluSx SINE Alu -5 307 1 548 273 59 84 chr3 16814225 16814383 -210710195 - L1MCa LINE L1 -5772 770 623 2706 94 11 0 chr3 16814383 16814743 -210709835 - THE1B LTR MaLR 0 364 1 548 273 59 84 chr3 16814743 16814906 -210709672 - L1MCa LINE L1 -5919 623 457 2024 100 0 0 chr3 16815179 16815439 -210709139 - AluSc SINE Alu -49 260 1 389 287 119 96 chr3 16815570 16815964 -210708614 - L2 LINE L2 0 3272 2870 221 264 53 125 chr3 16816159 16816367 -210708211 + MIR3 SINE MIR 8 200 -8 215 259 148 0 chr3 16817026 16817107 -210707471 + MIR SINE MIR 59 151 -111 2136 99 0 0 chr3 16817798 16818070 -210706508 + AluY SINE Alu 1 272 -39 325 266 107 17 chr3 16818553 16818730 -210705848 - L1MEc LINE L1 -3642 2573 2381 240 203 17 0 chr3 16818881 16818940 -210705638 - L1MEc LINE L1 -4118 2278 2219 1871 117 0 18 chr3 16819188 16819462 -210705116 - AluSx SINE Alu 0 312 44 1721 171 39 3 chr3 16819549 16819835 -210704743 - AluJo SINE Alu -16 296 1 2009 139 3 13 chr3 16820093 16820394 -210704184 - AluSg1 SINE Alu -11 298 1 2413 87 3 7 chr3 16820508 16820818 -210703760 - AluSx SINE Alu -3 309 1 835 179 0 8 chr3 16820819 16820953 -210703625 - AluJo SINE Alu -177 135 3 247 213 147 13 chr3 16821147 16821222 -210703356 + MIR SINE MIR 95 179 -83 963 186 16 11 chr3 16822347 16822535 -210702043 - MER5A DNA MER1_type 0 189 1 452 254 33 50 chr3 16822991 16823172 -210701406 + Charlie8 DNA MER1_type 97 274 -2143 2055 123 24 0 chr3 16823713 16824005 -210700573 + AluSx SINE Alu 2 300 -12 242 54 0 27 chr3 16824005 16824042 -210700536 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 1994 155 0 0 chr3 16824222 16824518 -210700060 - AluSx SINE Alu -16 296 1 561 196 0 0 chr3 16824743 16824835 -210699743 - FRAM SINE Alu -40 136 45 641 191 203 59 chr3 16824971 16825207 -210699371 - LOR1b LTR ERV1 -191 270 1 4495 186 52 97 chr3 16825207 16826792 -210697786 - L1 LINE L1 -1252 4894 3382 216 0 0 0 chr3 16826859 16826883 -210697695 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1456 141 70 21 chr3 16827214 16827498 -210697080 + L1MB7 LINE L1 5838 6135 -49 1881 116 4 4 chr3 16827539 16827797 -210696781 - AluSx SINE Alu -54 258 1 327 89 36 0 chr3 16827797 16827853 -210696725 + L1MB7 LINE L1 6127 6184 0 335 308 89 77 chr3 16827958 16828293 -210696285 + L2 LINE L2 2904 3256 -16 27 29 0 0 chr3 16828576 16828610 -210695968 + AT_rich Low_complexity Low_complexity 1 34 0 2029 135 10 3 chr3 16828947 16829250 -210695328 - AluSx SINE Alu -7 305 1 551 302 40 36 chr3 16829305 16829410 -210695168 - Charlie8 DNA MER1_type -117 224 121 2344 86 0 0 chr3 16829410 16829702 -210694876 - AluSx SINE Alu -20 292 1 551 302 40 36 chr3 16829702 16829818 -210694760 - Charlie8 DNA MER1_type -220 121 2 1446 182 29 42 chr3 16830897 16831205 -210693373 + AluJo SINE Alu 3 306 -6 2205 206 203 7 chr3 16831206 16831530 -210693048 + L1MB4 LINE L1 5210 5469 -711 2011 130 3 20 chr3 16831530 16831830 -210692748 - AluSg SINE Alu -15 295 1 2205 206 203 7 chr3 16831830 16832175 -210692403 + L1MB4 LINE L1 5469 6007 -173 217 214 0 0 chr3 16832904 16832946 -210691632 - MIR SINE MIR -140 122 81 537 234 82 22 chr3 16833392 16833576 -210691002 + MIR SINE MIR 62 256 -6 388 301 113 38 chr3 16834351 16834564 -210690014 + MIR SINE MIR 27 255 -7 199 241 28 56 chr3 16834996 16835104 -210689474 + MER5B DNA MER1_type 1 105 -73 2047 86 4 0 chr3 16835371 16835628 -210688950 - AluY SINE Alu -53 258 1 13656 118 43 9 chr3 16835630 16837311 -210687267 - Tigger1 DNA MER2_type -188 2230 462 2351 101 0 19 chr3 16837311 16837629 -210686949 - AluSx SINE Alu 0 312 1 13656 118 43 9 chr3 16837629 16838044 -210686534 - Tigger1 DNA MER2_type -1956 462 63 38 96 0 0 chr3 16838837 16838952 -210685626 + AT_rich Low_complexity Low_complexity 1 115 0 704 175 18 0 chr3 16838952 16839066 -210685512 + AluJb SINE Alu 185 300 -12 74 23 0 0 chr3 16839149 16839237 -210685341 + AT_rich Low_complexity Low_complexity 1 88 0 311 302 26 69 chr3 16839357 16839546 -210685032 - L1MC4a LINE L1 -1834 5974 5794 1735 170 35 7 chr3 16839546 16839834 -210684744 - AluJo SINE Alu -16 296 1 330 304 36 9 chr3 16839834 16839946 -210684632 - L1MC4a LINE L1 -2094 5714 5600 1835 188 149 80 chr3 16840227 16840862 -210683716 - L1ME3A LINE L1 0 6170 5393 796 141 76 65 chr3 16841309 16841377 -210683201 + MER53 DNA DNA 1 67 -122 2358 100 0 0 chr3 16841377 16841676 -210682902 - AluSg SINE Alu -11 299 1 796 141 76 65 chr3 16841676 16841791 -210682787 + MER53 DNA DNA 67 186 -3 796 223 51 59 chr3 16843262 16843335 -210681243 - MIR SINE MIR -8 254 182 1636 171 3 42 chr3 16843335 16843645 -210680933 - AluSp SINE Alu -15 298 1 796 223 51 59 chr3 16843645 16843827 -210680751 - MIR SINE MIR -80 182 1 351 214 14 0 chr3 16844477 16844547 -210680031 - MIR SINE MIR -113 149 79 513 308 56 14 chr3 16845100 16845314 -210679264 + MIR SINE MIR 26 248 -14 202 272 61 23 chr3 16845791 16845914 -210678664 - MIR3 SINE MIR -47 161 38 2425 83 0 3 chr3 16846031 16846332 -210678246 + AluSg SINE Alu 1 300 -10 387 0 0 0 chr3 16847066 16847109 -210677469 + (TG)n Simple_repeat Simple_repeat 2 44 0 202 256 135 113 chr3 16847517 16847650 -210676928 + MIR3 SINE MIR 2 137 -71 584 273 36 43 chr3 16847997 16848250 -210676328 - L1ME3A LINE L1 -43 6127 5877 255 170 0 0 chr3 16848323 16848370 -210676208 + A-rich Low_complexity Low_complexity 1 47 0 423 184 35 15 chr3 16848604 16848834 -210675744 + AluJo SINE Alu 2 282 -30 1998 107 48 10 chr3 16849839 16850128 -210674450 - AluSx SINE Alu -12 300 1 2308 104 0 7 chr3 16850212 16850521 -210674057 + AluSx SINE Alu 1 307 -5 241 298 71 85 chr3 16850828 16850969 -210673609 + MIR3 SINE MIR 16 154 -54 24 0 0 0 chr3 16854247 16854271 -210670307 + AT_rich Low_complexity Low_complexity 1 24 0 1926 140 4 0 chr3 16855416 16855694 -210668884 + AluSg SINE Alu 1 279 -31 182 103 0 51 chr3 16855721 16855760 -210668818 + (GGAA)n Simple_repeat Simple_repeat 3 39 0 1713 163 29 38 chr3 16855774 16856087 -210668491 + AluJb SINE Alu 1 310 -2 545 199 46 23 chr3 16856172 16856365 -210668213 + L1M4 LINE L1 2 254 -6288 632 256 63 43 chr3 16856469 16856770 -210667808 - L1M4 LINE L1 -3204 2942 2636 2494 46 0 16 chr3 16856891 16857196 -210667382 - AluYa5 SINE Alu -11 300 1 1243 124 43 74 chr3 16857435 16857758 -210666820 + AluSq SINE Alu 1 313 0 21 0 0 0 chr3 16857949 16857970 -210666608 + AT_rich Low_complexity Low_complexity 1 21 0 323 264 0 0 chr3 16858199 16858271 -210666307 - MARNA DNA Mariner -425 161 90 267 335 7 20 chr3 16859093 16859245 -210665333 - MARNA DNA Mariner -165 421 272 305 219 31 0 chr3 16859420 16859484 -210665094 + MIR SINE MIR 66 131 -131 225 0 100 0 chr3 16860974 16861014 -210663564 + A-rich Low_complexity Low_complexity 2 45 0 198 103 0 0 chr3 16861907 16861936 -210662642 + (GGGA)n Simple_repeat Simple_repeat 3 31 0 2321 109 0 0 chr3 16862390 16862702 -210661876 - AluSx SINE Alu 0 312 1 258 246 184 0 chr3 16863158 16863272 -210661306 - MIR SINE MIR -1 261 127 2853 0 0 0 chr3 16863657 16863958 -210660620 - AluYa5 SINE Alu -10 301 1 2359 109 3 0 chr3 16864013 16864325 -210660253 - AluSq SINE Alu 0 313 1 1977 143 3 13 chr3 16864583 16864884 -210659694 - AluSg1 SINE Alu -11 298 1 2396 88 3 7 chr3 16864998 16865306 -210659272 - AluSx SINE Alu -5 307 1 819 179 0 8 chr3 16865307 16865441 -210659137 - AluJo SINE Alu -177 135 3 230 222 153 14 chr3 16865638 16865710 -210658868 + MIR SINE MIR 98 179 -83 1646 162 0 70 chr3 16865959 16866287 -210658291 + AluJo SINE Alu 1 305 -7 1836 157 3 7 chr3 16866718 16867012 -210657566 - AluJb SINE Alu -4 308 16 545 253 154 18 chr3 16867366 16867639 -210656939 - L1ME3A LINE L1 -208 5962 5653 773 202 50 14 chr3 16867641 16867854 -210656724 - MER106B DNA MER1_type -2 234 2 634 244 72 62 chr3 16867877 16867911 -210656667 - L1ME3A LINE L1 -530 5634 5602 5387 130 53 5 chr3 16867911 16869035 -210655543 + L1PA13 LINE L1 4996 6163 0 634 244 72 62 chr3 16869035 16869291 -210655287 - L1ME3A LINE L1 -562 5602 5341 258 229 184 46 chr3 16869390 16869499 -210655079 + MIR3 SINE MIR 36 159 -49 400 240 52 31 chr3 16869500 16869596 -210654982 - MER5B DNA MER1_type 0 178 81 515 261 133 79 chr3 16870462 16870523 -210654055 - MLT1K LTR MaLR -20 568 512 2227 116 0 10 chr3 16870523 16870825 -210653753 + AluSg SINE Alu 1 299 -11 515 261 133 79 chr3 16870825 16871231 -210653347 - MLT1K LTR MaLR -76 512 76 1048 159 12 12 chr3 16872765 16872935 -210651643 + FRAM SINE Alu 1 166 -10 655 245 220 0 chr3 16873627 16873827 -210650751 - MIR SINE MIR -18 244 1 213 317 37 0 chr3 16873861 16873943 -210650635 - L3 LINE CR1 -284 1293 1209 1762 141 8 0 chr3 16874757 16875020 -210649558 - AluSx SINE Alu -13 299 35 420 82 0 0 chr3 16875410 16875471 -210649107 + (CA)n Simple_repeat Simple_repeat 2 62 0 1398 140 32 77 chr3 16875485 16875640 -210648938 + L1MB7 LINE L1 5913 6051 -133 2237 126 0 3 chr3 16875640 16875950 -210648628 + AluSx SINE Alu 1 309 -3 1398 140 32 77 chr3 16875950 16876079 -210648499 + L1MB7 LINE L1 6051 6184 0 787 294 83 40 chr3 16877763 16878235 -210646343 + MLT1K LTR MaLR 91 582 -6 257 270 0 16 chr3 16878260 16878323 -210646255 + L2 LINE L2 3207 3268 -4 485 200 0 0 chr3 16878358 16878438 -210646140 - MER3 DNA MER1_type -128 81 2 2502 188 32 28 chr3 16879507 16880075 -210644503 - L1MB8 LINE L1 -2 6176 5607 240 294 141 29 chr3 16881212 16881382 -210643196 + MER117 DNA MER1_type 2 190 -7 355 210 57 81 chr3 16881382 16881506 -210643072 + L2 LINE L2 3150 3270 -2 382 279 29 112 chr3 16881775 16881806 -210642772 + MIR3 SINE MIR 22 54 -154 180 0 0 0 chr3 16881806 16881826 -210642752 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2177 68 0 0 chr3 16881826 16882104 -210642474 - AluY SINE Alu -33 278 1 382 279 29 112 chr3 16882104 16882228 -210642350 + MIR3 SINE MIR 52 167 -41 1911 158 40 0 chr3 16882309 16882632 -210641946 + MER1B DNA MER1_type 2 337 0 21 0 0 0 chr3 16882712 16882733 -210641845 + AT_rich Low_complexity Low_complexity 1 21 0 270 213 120 0 chr3 16883406 16883481 -210641097 - MIR SINE MIR -24 238 155 180 263 0 0 chr3 16883484 16883522 -210641056 - MIR SINE MIR -223 39 2 403 279 82 33 chr3 16883870 16884053 -210640525 + MER117 DNA MER1_type 6 197 0 186 342 97 82 chr3 16884160 16884417 -210640161 - L2 LINE L2 -4 3268 3008 236 296 56 0 chr3 16885211 16885282 -210639296 - MIR3 SINE MIR -7 201 127 2278 76 0 16 chr3 16885287 16885591 -210638987 + AluY SINE Alu 1 299 -12 314 240 52 10 chr3 16885861 16885957 -210638621 + MER88 LTR ERVL 79 178 -286 * 1361 251 40 57 chr3 16885873 16886348 -210638230 - MER74A LTR ERVL -70 488 22 2012 116 3 0 chr3 16886384 16886719 -210637859 - AluSp SINE Alu 0 336 1 241 143 48 0 chr3 16887106 16887148 -210637430 - MLT1K LTR MaLR -8 580 537 1957 146 0 3 chr3 16887627 16887929 -210636649 + AluJb SINE Alu 1 301 -11 674 312 46 14 chr3 16888292 16888510 -210636068 + MIR SINE MIR 26 250 -12 252 0 0 0 chr3 16888627 16888655 -210635923 + (TG)n Simple_repeat Simple_repeat 2 29 0 2139 77 39 0 chr3 16888715 16889001 -210635577 + AluY SINE Alu 1 297 -14 1488 145 16 76 chr3 16889021 16889324 -210635254 + AluJb SINE Alu 18 302 -10 2094 105 23 3 chr3 16890389 16890693 -210633885 + AluSq SINE Alu 1 310 -3 527 242 87 13 chr3 16890754 16890903 -210633675 + MIR SINE MIR 1 160 -102 1954 114 4 0 chr3 16890912 16891216 -210633362 - AluSx SINE Alu 0 305 1 469 296 44 44 chr3 16891220 16891426 -210633152 + L2 LINE L2 3100 3305 -8 2275 95 3 0 chr3 16892709 16893014 -210631564 + AluSp SINE Alu 1 306 -7 1917 137 3 13 chr3 16893245 16893545 -210631033 + AluSx SINE Alu 1 297 -15 1459 196 101 6 chr3 16893746 16894063 -210630515 - MER7A DNA MER2_type -1 345 1 344 266 84 58 chr3 16894064 16894218 -210630360 - MIR SINE MIR -15 247 90 186 296 14 28 chr3 16894625 16894696 -210629882 + L2 LINE L2 2658 2727 -587 353 315 54 0 chr3 16894925 16895017 -210629561 + L2 LINE L2 3156 3252 -20 2050 117 24 0 chr3 16895277 16895575 -210629003 - AluSx SINE Alu -7 305 1 1122 294 104 19 chr3 16895617 16896079 -210628499 - MLT1K LTR MaLR 0 588 88 407 333 40 35 chr3 16896852 16897080 -210627498 - MIR SINE MIR -12 250 22 692 285 68 93 chr3 16897684 16897860 -210626718 - L2 LINE L2 -17 3296 3117 1673 170 0 29 chr3 16897860 16898166 -210626412 + AluJo SINE Alu 6 302 -10 692 285 68 93 chr3 16898166 16898640 -210625938 - L2 LINE L2 -196 3117 2637 309 241 54 108 chr3 16898745 16898911 -210625667 - MIR SINE MIR 0 262 106 396 0 0 0 chr3 16899407 16899451 -210625127 + (CA)n Simple_repeat Simple_repeat 2 45 0 620 264 63 116 chr3 16901166 16901624 -210622954 - MLT1K LTR MaLR -4 584 151 480 18 0 0 chr3 16902530 16902587 -210621991 + (CA)n Simple_repeat Simple_repeat 2 58 0 181 29 29 57 chr3 16903200 16903235 -210621343 + (TAAAAA)n Simple_repeat Simple_repeat 2 35 0 2228 86 0 13 chr3 16903476 16903777 -210620801 - AluY SINE Alu -14 297 1 597 92 0 0 chr3 16903921 16903997 -210620581 + AluS SINE Alu 2 77 -236 3353 135 79 2 chr3 16904127 16904696 -210619882 + L1MC1 LINE L1 5493 6105 -228 318 133 0 50 chr3 16904697 16904757 -210619821 + AluJo SINE Alu 87 143 -159 * 1684 116 4 4 chr3 16904749 16904991 -210619587 + MER50 LTR ERV1 493 734 0 518 92 2 0 chr3 16905086 16905161 -210619417 - MER4-int LTR ERV1 -989 5609 5545 951 107 34 20 chr3 16905213 16905362 -210619216 + MER50-int LTR ERV1 6969 7119 -86 747 258 131 10 chr3 16905572 16905770 -210618808 - MIR SINE MIR -29 233 12 196 202 236 56 chr3 16905922 16906011 -210618567 + L2 LINE L2 3208 3312 -1 187 87 0 0 chr3 16906968 16906991 -210617587 + (T)n Simple_repeat Simple_repeat 1 23 0 724 129 0 0 chr3 16908185 16908286 -210616292 + AluS SINE Alu 2 102 -211 227 230 170 0 chr3 16908448 16908548 -210616030 + L2 LINE L2 3095 3211 -102 1837 148 10 3 chr3 16908548 16908846 -210615732 - AluJb SINE Alu -12 300 1 2039 142 0 0 chr3 16908857 16909167 -210615411 - AluSx SINE Alu -2 310 1 193 322 147 0 chr3 16909462 16909605 -210614973 + MIR SINE MIR 99 262 0 820 220 5 19 chr3 16909709 16909923 -210614655 - AluY SINE Alu 0 311 101 441 307 80 33 chr3 16910265 16910361 -210614217 - MIR SINE MIR -16 246 156 2107 84 0 36 chr3 16910361 16910670 -210613908 + AluY SINE Alu 1 298 -13 441 307 80 33 chr3 16910670 16910785 -210613793 - MIR SINE MIR -106 156 25 537 168 144 102 chr3 16911821 16912077 -210612501 - MER33 DNA MER1_type 0 324 58 258 235 25 12 chr3 16912139 16912220 -210612358 + AluY SINE Alu 217 298 -3 854 161 8 0 chr3 16912443 16912573 -210612005 + Tigger3(Golem) DNA MER2_type 47 177 -2852 1704 160 13 38 chr3 16912574 16912892 -210611686 + AluSx SINE Alu 3 312 0 230 222 49 49 chr3 16912905 16912986 -210611592 + L1MD3 LINE L1 7060 7140 -855 408 278 128 26 chr3 16913165 16913392 -210611186 + L1MC4 LINE L1 7369 7618 -424 2129 105 3 3 chr3 16913392 16913687 -210610891 + AluSp SINE Alu 1 295 -18 339 201 37 45 chr3 16913724 16913858 -210610720 - L1MC5 LINE L1 -141 7820 7688 236 323 47 0 chr3 16914828 16914923 -210609655 + MIR SINE MIR 64 163 -60 349 253 13 0 chr3 16915101 16915180 -210609398 + MIR SINE MIR 166 245 -17 232 227 130 64 chr3 16915259 16915371 -210609207 - MIR SINE MIR -42 220 87 1852 188 25 3 chr3 16915420 16915777 -210608801 - L1MB7 LINE L1 -208 5976 5612 1423 122 0 0 chr3 16916384 16916589 -210607989 + AluSg/x SINE Alu 101 305 -7 1520 169 0 4 chr3 16916716 16916971 -210607607 - AluJb SINE Alu -58 254 1 235 245 0 0 chr3 16917046 16917099 -210607479 - MLT1H LTR MaLR -13 536 484 234 321 92 9 chr3 16917163 16917272 -210607306 - MIR3 SINE MIR -45 163 46 344 273 145 29 chr3 16917659 16917831 -210606747 + MER117 DNA MER1_type 6 197 0 316 97 153 0 chr3 16920452 16920524 -210604054 - L1PA8 LINE L1 -151 6021 5939 192 205 26 0 chr3 16920926 16920965 -210603613 - L2 LINE L2 -43 3270 3231 1804 115 46 30 chr3 16921000 16921304 -210603274 - AluJb SINE Alu -3 309 1 311 281 52 10 chr3 16921371 16921467 -210603111 - L1ME LINE L1 -5019 1063 964 901 260 104 45 chr3 16921482 16921745 -210602833 - L1ME LINE L1 -5220 850 604 1989 114 3 7 chr3 16921745 16922042 -210602536 - AluSq SINE Alu -17 296 1 901 260 104 45 chr3 16922042 16922374 -210602204 - L1ME LINE L1 -5466 604 198 1410 183 15 0 chr3 16922412 16922685 -210601893 - AluSx SINE Alu -35 277 1 1592 171 0 17 chr3 16922687 16922974 -210601604 - AluJo SINE Alu -9 303 22 305 239 25 0 chr3 16922974 16923054 -210601524 - L1M4c LINE L1 -4556 1826 1689 * 343 125 18 0 chr3 16923049 16923105 -210601473 + L1MC/D LINE L1 5453 5509 -835 411 213 74 9 chr3 16923508 16923616 -210600962 - MER5B DNA MER1_type -63 115 1 595 341 18 27 chr3 16923638 16923861 -210600717 + MIR SINE MIR 2 222 -40 478 259 42 35 chr3 16924204 16924432 -210600146 + MIR3 SINE MIR 11 237 -25 255 228 22 76 chr3 16924654 16924746 -210599832 - MIR SINE MIR -57 151 65 271 295 73 8 chr3 16925142 16925268 -210599310 + MIR SINE MIR 35 166 -55 1684 148 0 11 chr3 16925844 16926121 -210598457 + AluJb SINE Alu 5 278 -34 424 239 69 11 chr3 16926554 16926706 -210597872 + L1MC/D LINE L1 5313 5472 -916 264 161 113 0 chr3 16927165 16927227 -210597351 - MIR SINE MIR -75 187 119 485 308 31 13 chr3 16927457 16927616 -210596962 - MIR SINE MIR -40 222 61 2214 108 0 0 chr3 16927619 16927924 -210596654 + AluSx SINE Alu 4 308 -4 256 229 0 0 chr3 16928123 16928171 -210596407 + AluY SINE Alu 133 180 -121 305 262 94 34 chr3 16929299 16929448 -210595130 + MIR3 SINE MIR 50 207 -1 1626 92 0 0 chr3 16929730 16929947 -210594631 + AluSx SINE Alu 1 217 -95 198 0 0 0 chr3 16930933 16930955 -210593623 + (CA)n Simple_repeat Simple_repeat 1 22 0 1992 221 33 53 chr3 16930971 16931633 -210592945 + MER82 DNA MER2_type 4 652 -1 340 207 126 0 chr3 16931706 16931793 -210592785 + MER53 DNA DNA 92 189 0 416 277 208 0 chr3 16931801 16931960 -210592618 - MIR SINE MIR -13 249 58 2083 109 13 16 chr3 16932042 16932355 -210592223 + AluSx SINE Alu 1 312 0 192 268 138 14 chr3 16932401 16932539 -210592039 - L2 LINE L2 -153 3119 2965 395 274 43 8 chr3 16932860 16932977 -210591601 + MIR SINE MIR 35 155 -107 1433 87 0 10 chr3 16933805 16934001 -210590577 - AluSg/x SINE Alu -10 299 106 308 270 43 26 chr3 16934304 16934419 -210590159 - MIR3 SINE MIR -32 176 60 237 162 206 0 chr3 16934455 16934523 -210590055 + MER103 DNA DNA 12 93 -73 293 267 53 0 chr3 16935482 16935557 -210589021 + MIR SINE MIR 113 191 -71 * 485 228 92 71 chr3 16935552 16935736 -210588842 - MIR SINE MIR 0 262 75 216 250 36 0 chr3 16936853 16936909 -210587669 - MER5B DNA MER1_type -61 117 60 1047 161 62 13 chr3 16937139 16937417 -210587161 - MER2 DNA MER2_type 0 345 2 2618 183 67 17 chr3 16937807 16938386 -210586192 - L1MB7 LINE L1 0 6184 5577 234 244 128 13 chr3 16938388 16938466 -210586112 - MIR3 SINE MIR -54 154 68 1740 157 16 29 chr3 16939262 16939575 -210585003 + AluJb SINE Alu 1 309 -3 364 291 45 0 chr3 16940285 16940419 -210584159 + MIR SINE MIR 53 192 -70 1920 78 3 28 chr3 16940432 16940714 -210583864 + AluY SINE Alu 23 297 -14 319 183 0 0 chr3 16941323 16941383 -210583195 - L1ME3 LINE L1 -58 6104 6045 784 129 187 0 chr3 16941383 16941522 -210583056 - FRAM SINE Alu -14 162 1 691 229 56 19 chr3 16941627 16941841 -210582737 - L1ME3 LINE L1 -127 6035 5814 352 200 0 0 chr3 16941851 16941926 -210582652 - L1ME3 LINE L1 -1597 4549 4475 2095 89 3 10 chr3 16942033 16942335 -210582243 - AluSx SINE Alu -12 300 1 641 256 118 13 chr3 16942540 16942778 -210581800 - L1MC4a LINE L1 -1814 5994 5732 343 106 0 0 chr3 16942797 16942844 -210581734 + MER4E LTR ERV1 651 697 -69 213 109 0 55 chr3 16942844 16942899 -210581679 + (TA)n Simple_repeat Simple_repeat 2 53 0 2514 240 56 32 chr3 16943444 16944324 -210580254 - L1ME3 LINE L1 -1744 4402 3502 628 179 154 38 chr3 16944325 16944565 -210580013 - AluJo SINE Alu -7 305 38 226 340 30 10 chr3 16944779 16944879 -210579699 - L2 LINE L2 -561 2753 2652 308 222 33 33 chr3 16945297 16945388 -210579190 - MIR3 SINE MIR -47 161 70 2394 65 0 3 chr3 16945395 16945703 -210578875 + AluY SINE Alu 1 307 -4 216 236 6 35 chr3 16945812 16945870 -210578708 - MIR SINE MIR -61 147 95 190 279 132 0 chr3 16946747 16946815 -210577763 - MIR3 SINE MIR -54 154 78 407 228 177 32 chr3 16946830 16946988 -210577590 + MIR SINE MIR 20 200 -62 844 201 0 0 chr3 16947195 16947368 -210577210 - AluJb SINE Alu 0 306 134 496 91 0 0 chr3 16947383 16947449 -210577129 + L1MA3 LINE L1 6195 6260 -45 * 2038 96 0 51 chr3 16947449 16947763 -210576815 + AluSx SINE Alu 1 298 -14 835 260 109 30 chr3 16947763 16948087 -210576491 - L1MC4a LINE L1 -1856 5952 5600 * 1159 223 8 0 chr3 16948086 16948346 -210576232 + L1MB5 LINE L1 4915 5176 -970 24 0 0 0 chr3 16948362 16948386 -210576192 + AT_rich Low_complexity Low_complexity 1 24 0 2285 84 0 0 chr3 16948408 16948704 -210575874 - AluSg SINE Alu -14 296 1 2341 202 42 8 chr3 16948720 16949220 -210575358 + L1MB5 LINE L1 5491 6007 -167 616 231 42 7 chr3 16949230 16949373 -210575205 - L1MC4a LINE L1 -2191 5617 5470 1083 139 0 0 chr3 16949527 16949692 -210574886 + AluSg/x SINE Alu 138 302 -10 21 57 0 0 chr3 16950088 16950123 -210574455 + AT_rich Low_complexity Low_complexity 1 35 0 1938 103 30 30 chr3 16953004 16953305 -210571273 + AluSg SINE Alu 1 301 -9 204 333 19 0 chr3 16953668 16953722 -210570856 - L2 LINE L2 -13 3259 3205 363 297 103 7 chr3 16953929 16954084 -210570494 + MIR SINE MIR 20 189 -73 303 156 0 0 chr3 16954112 16954157 -210570421 - MER47A DNA MER2_type 0 366 322 803 117 17 0 chr3 16954160 16954280 -210570298 - AluSg/x SINE Alu -12 300 179 1079 116 29 6 chr3 16954283 16954455 -210570123 - MER47A DNA MER2_type -121 245 70 2026 102 3 14 chr3 16954673 16954966 -210569612 + AluSp SINE Alu 1 290 -23 934 186 72 0 chr3 16954985 16955178 -210569400 + AluJo SINE Alu 82 288 -24 1120 223 60 45 chr3 16955298 16955566 -210569012 + L1MEc LINE L1 745 1023 -5373 2083 101 0 0 chr3 16955566 16955863 -210568715 + AluSq SINE Alu 6 302 0 1120 223 60 45 chr3 16955863 16955975 -210568603 + L1MEc LINE L1 1023 1132 -5264 296 247 103 41 chr3 16957634 16957731 -210566847 - MIR SINE MIR -78 184 82 273 136 0 0 chr3 16958127 16958171 -210566407 - Charlie4 DNA MER1_type -54 1907 1864 2011 107 0 21 chr3 16958609 16958898 -210565680 + AluSx SINE Alu 1 283 -29 617 138 147 17 chr3 16959433 16959549 -210565029 - FLAM_C SINE Alu -2 131 1 1927 114 35 7 chr3 16959901 16960190 -210564388 + AluSx SINE Alu 1 297 -15 1884 116 40 7 chr3 16960841 16961143 -210563435 + AluSx SINE Alu 1 312 0 231 61 0 0 chr3 16961246 16961279 -210563299 + (T)n Simple_repeat Simple_repeat 1 33 0 754 145 0 0 chr3 16961369 16961486 -210563092 + FLAM_C SINE Alu 1 117 -16 2441 131 59 5 chr3 16961528 16961933 -210562645 + Tigger3(Golem) DNA MER2_type 2603 3029 0 372 266 60 96 chr3 16962225 16962424 -210562154 - MIR3 SINE MIR -10 198 7 896 9 0 0 chr3 16962756 16962861 -210561717 - AluYa5/8 SINE Alu -2 308 204 316 263 54 46 chr3 16962927 16963119 -210561459 - MLT1J1 LTR MaLR -7 443 243 * 485 252 19 0 chr3 16963114 16963221 -210561357 - MLT1J1 LTR MaLR -337 109 1 714 284 42 21 chr3 16964443 16964682 -210559896 - MIR SINE MIR -2 260 17 330 329 21 14 chr3 16964704 16964844 -210559734 + MIR3 SINE MIR 14 154 -54 1757 147 3 7 chr3 16964893 16965179 -210559399 + AluJb SINE Alu 1 285 -27 827 195 0 12 chr3 16965212 16965381 -210559197 + L1MB7 LINE L1 6007 6173 -11 245 320 80 0 chr3 16965551 16965651 -210558927 + L2 LINE L2 3206 3313 0 302 277 98 27 chr3 16965690 16965802 -210558776 + L2 LINE L2 3151 3270 -2 248 196 0 20 chr3 16965882 16965933 -210558645 - LTR67 LTR ERVL 0 557 508 330 85 73 73 chr3 16966767 16966849 -210557729 + Alu SINE Alu 219 300 0 2053 85 0 0 chr3 16967408 16967666 -210556912 - AluSq SINE Alu -29 284 27 425 297 99 26 chr3 16967699 16967891 -210556687 + MIR SINE MIR 34 239 -23 180 0 0 0 chr3 16968114 16968134 -210556444 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2154 94 0 10 chr3 16968579 16968878 -210555700 + AluSq SINE Alu 1 296 -17 1515 158 52 7 chr3 16969015 16969287 -210555291 + AluJb SINE Alu 27 310 -2 474 303 148 0 chr3 16969514 16969676 -210554902 + MIR SINE MIR 2 187 -75 1260 186 104 13 chr3 16970086 16970415 -210554163 - MER93a LTR ERV1 0 402 1 265 224 122 31 chr3 16970432 16970530 -210554048 - MARNA DNA Mariner -236 350 244 24 0 0 0 chr3 16971921 16971945 -210552633 + AT_rich Low_complexity Low_complexity 1 24 0 1280 157 4 30 chr3 16972252 16972487 -210552091 + AluJo SINE Alu 1 229 -83 1640 141 74 0 chr3 16972691 16972960 -210551618 + AluJo SINE Alu 1 289 -23 2156 104 17 0 chr3 16973459 16973757 -210550821 + AluSx SINE Alu 1 303 -9 828 211 6 0 chr3 16973772 16973938 -210550640 + AluJb SINE Alu 137 303 -9 380 206 0 41 chr3 16974039 16974136 -210550442 - L1MB8 LINE L1 -1 6177 6085 1531 173 0 0 chr3 16974265 16974514 -210550064 + AluJb SINE Alu 1 249 -63 2162 68 7 10 chr3 16974865 16975160 -210549418 + AluY SINE Alu 1 294 -17 282 95 0 0 chr3 16975169 16975211 -210549367 + (TG)n Simple_repeat Simple_repeat 1 42 0 450 232 56 21 chr3 16975797 16975939 -210548639 + AluSg/x SINE Alu 134 280 -32 1701 142 39 3 chr3 16976922 16977204 -210547374 + AluSx SINE Alu 1 292 -20 297 0 0 0 chr3 16977216 16977249 -210547329 + (CA)n Simple_repeat Simple_repeat 2 34 0 679 238 14 7 chr3 16979262 16979409 -210545169 + FAM SINE Alu 1 148 -37 450 296 46 7 chr3 16979657 16979809 -210544769 + MIR SINE MIR 98 255 -7 302 314 0 0 chr3 16979889 16979959 -210544619 - L2 LINE L2 -15 3298 3229 265 267 128 0 chr3 16980028 16980114 -210544464 + L2 LINE L2 3217 3313 0 932 180 0 11 chr3 16981150 16981328 -210543250 - FRAM SINE Alu -8 168 1 1939 150 3 0 chr3 16981486 16981793 -210542785 - AluSx SINE Alu -4 308 1 832 136 0 0 chr3 16983387 16983505 -210541073 - 5S rRNA rRNA -1 120 3 254 263 127 25 chr3 16983710 16983828 -210540750 + L1P LINE L1 4883 5012 -1134 1804 168 0 0 chr3 16983863 16984155 -210540423 - AluJb SINE Alu -15 297 6 261 196 0 36 chr3 16984708 16984764 -210539814 + L2 LINE L2 3234 3287 -26 21 0 0 0 chr3 16985335 16985356 -210539222 + AT_rich Low_complexity Low_complexity 1 21 0 599 108 0 0 chr3 16985638 16985721 -210538857 + AluS SINE Alu 2 84 -229 293 254 173 76 chr3 16985748 16985945 -210538633 - MIR SINE MIR -46 216 1 391 325 294 2 chr3 16986273 16986764 -210537814 - L2 LINE L2 -6 3307 2657 189 107 0 0 chr3 16987412 16987440 -210537138 + (TCCCC)n Simple_repeat Simple_repeat 1 28 0 1852 154 3 3 chr3 16987791 16988090 -210536488 + AluSx SINE Alu 1 299 -13 25 0 0 0 chr3 16988290 16988315 -210536263 + AT_rich Low_complexity Low_complexity 1 25 0 2128 112 0 10 chr3 16988324 16988629 -210535949 + AluSg SINE Alu 1 302 -8 1325 164 12 12 chr3 16988635 16988879 -210535699 - AluJo SINE Alu -19 293 50 1532 152 83 90 chr3 16989074 16989219 -210535359 - L1MB7 LINE L1 -19 6165 6020 2278 158 41 14 chr3 16989219 16989637 -210534941 - MSTB1 LTR MaLR 0 432 4 1532 152 83 90 chr3 16989637 16989750 -210534828 - L1MB7 LINE L1 -164 6020 5908 1710 195 26 3 chr3 16989750 16990089 -210534489 + MER7A DNA MER2_type 2 346 0 1532 152 83 90 chr3 16990089 16990262 -210534316 - L1MB7 LINE L1 -276 5908 5736 1038 157 68 36 chr3 16990309 16990558 -210534020 + AluJo SINE Alu 1 257 -55 1394 167 8 0 chr3 16991083 16991320 -210533258 + AluSg SINE Alu 59 300 -10 2349 72 13 0 chr3 16991320 16991627 -210532951 + AluY SINE Alu 1 311 0 443 86 129 0 chr3 16991636 16991729 -210532849 + Tigger7 DNA MER2_type 2241 2345 -142 186 167 0 0 chr3 16991824 16991860 -210532718 + (TGGA)n Simple_repeat Simple_repeat 2 37 0 330 283 57 38 chr3 16992521 16992680 -210531898 - MIR SINE MIR -35 227 66 1359 153 0 26 chr3 16993140 16993368 -210531210 - AluSx SINE Alu -29 283 62 519 267 9 37 chr3 16993670 16993854 -210530724 + L1ME2 LINE L1 5984 6166 0 1431 183 66 3 chr3 16994365 16994654 -210529924 + AluJo SINE Alu 3 309 -3 1555 131 12 116 chr3 16994677 16995012 -210529566 + AluJo SINE Alu 1 300 -2 226 292 83 0 chr3 16995523 16995595 -210528983 - L2 LINE L2 -5 3267 3190 895 155 23 6 chr3 16995600 16995774 -210528804 + L1MB3 LINE L1 6006 6182 -1 373 335 8 23 chr3 16996180 16996394 -210528184 + MIR SINE MIR 44 251 -11 796 220 29 24 chr3 16997219 16997428 -210527150 - L1ME3 LINE L1 0 6162 5953 1939 149 10 0 chr3 16998536 16998845 -210525733 + AluSx SINE Alu 1 312 0 183 351 65 0 chr3 16998867 16998944 -210525634 + L3 LINE CR1 613 694 -883 12786 31 3 0 chr3 16998977 17001248 -210523330 - L1PA3 LINE L1 -3 6152 3867 5908 37 12 12 chr3 17001253 17001977 -210522601 - SVA Other Other 0 1386 663 21308 97 22 23 chr3 17002110 17005892 -210518686 - L1PA3 LINE L1 -2301 3845 1 774 189 20 33 chr3 17005894 17006047 -210518531 - LTR28 LTR ERV1 -5 1015 865 * 2195 190 178 97 chr3 17006031 17006994 -210517584 - LTR28 LTR ERV1 -37 983 1 445 298 189 73 chr3 17007003 17007439 -210517139 + L3 LINE CR1 723 1107 -470 3327 102 37 6 chr3 17007439 17007921 -210516657 - LOR1a LTR ERV1 0 497 1 445 298 189 73 chr3 17007921 17008193 -210516385 + L3 LINE CR1 1107 1527 -50 2237 81 0 20 chr3 17008193 17008491 -210516087 + AluSg SINE Alu 1 292 -18 445 298 189 73 chr3 17008491 17008543 -210516035 + L3 LINE CR1 1527 1572 -5 264 261 23 57 chr3 17009389 17009477 -210515101 - MIR SINE MIR -79 183 99 212 158 0 26 chr3 17009805 17009843 -210514735 + CT-rich Low_complexity Low_complexity 4 40 0 1072 110 49 0 chr3 17010389 17010552 -210514026 + AluSg/x SINE Alu 132 302 -8 239 95 48 0 chr3 17011136 17011178 -210513400 + (CATA)n Simple_repeat Simple_repeat 1 44 0 182 344 16 16 chr3 17011455 17011577 -210513001 + L2 LINE L2 2624 2745 -569 2595 186 41 43 chr3 17011951 17012460 -210512118 - MER119 DNA MER1_type -3 580 71 2254 97 0 3 chr3 17012460 17012771 -210511807 + AluSq SINE Alu 1 310 -3 2595 186 41 43 chr3 17012771 17012842 -210511736 - MER119 DNA MER1_type -512 71 1 365 375 7 0 chr3 17013002 17013146 -210511432 + L3 LINE CR1 1432 1576 -1 528 296 67 85 chr3 17013349 17013642 -210510936 + L1M4 LINE L1 2712 3009 -3137 1849 101 61 7 chr3 17013642 17013920 -210510658 - AluSc SINE Alu -11 298 6 528 296 67 85 chr3 17013920 17013969 -210510609 + L1M4 LINE L1 3009 3057 -3089 1756 170 7 0 chr3 17013969 17014263 -210510315 + AluJb SINE Alu 1 296 -16 528 296 67 85 chr3 17014263 17014321 -210510257 + L1M4 LINE L1 3057 3106 -3040 202 310 17 0 chr3 17014331 17014389 -210510189 + MIR SINE MIR 204 262 0 323 272 79 26 chr3 17014472 17014586 -210509992 + L1MC4 LINE L1 7693 7812 -230 2117 106 0 20 chr3 17015567 17015870 -210508708 + AluSq SINE Alu 12 308 -5 1918 119 54 0 chr3 17016076 17016370 -210508208 - AluSg SINE Alu 0 310 1 448 286 118 70 chr3 17016610 17016967 -210507611 - L1ME3 LINE L1 -196 5966 5593 1853 113 17 7 chr3 17017555 17017846 -210506732 - AluSx SINE Alu -18 294 1 1781 143 0 32 chr3 17018204 17018518 -210506060 + AluJb SINE Alu 1 304 -8 2144 105 0 7 chr3 17018573 17018877 -210505701 + AluSc SINE Alu 1 302 -7 268 341 0 0 chr3 17019173 17019264 -210505314 + MIR3 SINE MIR 104 194 -14 234 132 0 0 chr3 17019587 17019625 -210504953 - MIR SINE MIR -101 161 124 2448 61 0 6 chr3 17019856 17020169 -210504409 - AluY SINE Alu 0 311 1 470 242 16 23 chr3 17020435 17020563 -210504015 - MIR SINE MIR -128 134 8 181 191 32 117 chr3 17020642 17020736 -210503842 + MIR SINE MIR 110 195 -67 197 244 0 171 chr3 17021360 17021483 -210503095 + MIR SINE MIR 119 220 -42 2424 70 0 0 chr3 17021858 17022159 -210502419 - AluY SINE Alu -10 301 1 569 296 17 17 chr3 17022281 17022453 -210502125 - MIR SINE MIR -75 187 16 447 275 70 7 chr3 17023186 17023328 -210501250 + MIR SINE MIR 32 182 -80 1577 159 0 88 chr3 17024786 17025126 -210499452 + AluJo SINE Alu 3 312 0 243 0 0 0 chr3 17025339 17025366 -210499212 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1735 144 22 0 chr3 17025368 17025638 -210498940 - AluSx SINE Alu -36 276 1 180 0 0 0 chr3 17025756 17025776 -210498802 + (T)n Simple_repeat Simple_repeat 1 20 0 2359 74 0 0 chr3 17025863 17026160 -210498418 - AluY SINE Alu -14 297 1 1855 150 0 7 chr3 17026415 17026715 -210497863 + AluJb SINE Alu 1 298 -14 609 262 101 56 chr3 17026764 17027280 -210497298 - L1M4 LINE L1 -1732 4414 3876 288 77 0 0 chr3 17027332 17027371 -210497207 + (TG)n Simple_repeat Simple_repeat 2 40 0 252 89 0 0 chr3 17027371 17027416 -210497162 + LTR66 LTR ERVL 394 438 -172 1966 127 21 0 chr3 17027422 17027705 -210496873 - AluSx SINE Alu -23 289 1 2286 81 0 3 chr3 17028855 17029153 -210495425 + AluSg SINE Alu 5 301 -9 1910 138 0 0 chr3 17031025 17031307 -210493271 + AluSx SINE Alu 21 302 -10 207 308 66 0 chr3 17031419 17031510 -210493068 - MIR SINE MIR -139 123 27 1804 155 30 3 chr3 17031897 17032194 -210492384 + AluJb SINE Alu 1 305 -7 328 326 0 0 chr3 17032209 17032298 -210492280 - MIR SINE MIR -6 256 168 188 65 0 32 chr3 17032352 17032383 -210492195 + (TCC)n Simple_repeat Simple_repeat 1 30 0 1678 193 3 0 chr3 17032746 17033041 -210491537 + AluJb SINE Alu 1 296 -16 220 403 37 0 chr3 17033044 17033178 -210491400 + MIR SINE MIR 121 259 -3 352 311 107 6 chr3 17037023 17037200 -210487378 + MIR3 SINE MIR 11 205 -3 210 346 89 0 chr3 17037216 17037317 -210487261 + L2 LINE L2 2512 2621 -693 551 308 67 65 chr3 17037427 17037813 -210486765 + L2 LINE L2 2926 3312 -1 309 303 81 27 chr3 17038012 17038233 -210486345 - MIR SINE MIR -10 252 20 312 328 34 8 chr3 17038682 17038801 -210485777 + MIR SINE MIR 19 140 -122 1461 166 3 89 chr3 17038866 17039204 -210485374 + AluJb SINE Alu 2 310 -2 960 249 9 0 chr3 17039473 17039690 -210484888 - MIR SINE MIR -27 235 17 227 250 69 0 chr3 17040045 17040117 -210484461 - L1ME1 LINE L1 -24 6142 6066 1742 258 61 40 chr3 17040140 17040744 -210483834 - L1ME1 LINE L1 -277 5889 5273 1158 169 0 41 chr3 17040744 17040963 -210483615 + AluJb SINE Alu 85 294 -18 1303 233 60 64 chr3 17040966 17041234 -210483344 - L1ME1 LINE L1 -873 5273 5006 2301 47 0 4 chr3 17041234 17041511 -210483067 - AluY SINE Alu -35 276 1 1303 233 60 64 chr3 17041511 17041775 -210482803 - L1ME1 LINE L1 -1140 5006 4743 1528 91 0 10 chr3 17043929 17044137 -210480441 + AluSx SINE Alu 1 206 -106 277 279 156 12 chr3 17045143 17045483 -210479095 - L2 LINE L2 -42 3230 2842 1553 145 20 4 chr3 17046202 17046457 -210478121 + AluJo SINE Alu 34 292 -20 2287 107 0 0 chr3 17046474 17046783 -210477795 - AluSx SINE Alu -3 309 1 247 238 36 24 chr3 17047518 17047602 -210476976 + MIR SINE MIR 65 149 -113 2116 149 30 149 chr3 17047656 17048161 -210476417 - L1M4 LINE L1 -370 5808 5245 1716 158 48 10 chr3 17048161 17048453 -210476125 - AluJb SINE Alu -7 305 3 2116 149 30 149 chr3 17048453 17048509 -210476069 - L1M4 LINE L1 -933 5245 5184 440 143 0 0 chr3 17048509 17048579 -210475999 - FLAM_C SINE Alu -2 141 72 2116 149 30 149 chr3 17048579 17048760 -210475818 - L1M4 LINE L1 -994 5184 5091 1094 302 134 21 chr3 17048820 17049379 -210475199 - L1MC4a LINE L1 -1762 6046 5425 362 219 16 11 chr3 17049401 17049560 -210475018 - L1ME2 LINE L1 -15 6149 5879 1001 202 109 8 chr3 17049563 17049830 -210474748 - L1MA9 LINE L1 -33 6279 5986 * 1889 255 88 3 chr3 17049829 17050579 -210473999 - L1ME2 LINE L1 -273 5891 5081 289 243 40 69 chr3 17050574 17050697 -210473881 - L1MC4a LINE L1 -747 5399 5300 * 1625 156 20 24 chr3 17050697 17050992 -210473586 - AluJb SINE Alu -1 311 18 289 243 40 69 chr3 17050992 17051081 -210473497 - L1MC4a LINE L1 -846 5300 5210 392 329 60 24 chr3 17051129 17051378 -210473200 - L1MC4a LINE L1 -1000 5146 4889 829 148 0 28 chr3 17051899 17052041 -210472537 - FLAM_C SINE Alu -5 138 1 2252 110 0 0 chr3 17052052 17052360 -210472218 - AluSx SINE Alu -4 308 1 326 270 101 14 chr3 17052549 17052697 -210471881 - L1ME LINE L1 -504 5617 5457 296 307 193 0 chr3 17053506 17053672 -210470906 + MIR SINE MIR 59 256 -6 182 222 0 63 chr3 17054691 17054754 -210469824 - L2 LINE L2 -89 3224 3166 201 158 0 0 chr3 17058219 17058257 -210466321 + A-rich Low_complexity Low_complexity 5 42 0 251 146 36 36 chr3 17059118 17059173 -210465405 + (CAGG)n Simple_repeat Simple_repeat 4 58 0 337 314 181 41 chr3 17060623 17061037 -210463541 + L3 LINE CR1 456 927 -650 257 341 77 0 chr3 17061958 17062049 -210462529 - MIR SINE MIR -55 153 56 2250 98 10 0 chr3 17062180 17062485 -210462093 - AluSx SINE Alu -4 308 1 244 347 33 33 chr3 17063757 17063907 -210460671 + L2 LINE L2 3118 3267 -5 214 276 172 35 chr3 17063954 17064070 -210460508 + L2 LINE L2 3141 3272 0 227 200 0 0 chr3 17064951 17065001 -210459577 + CT-rich Low_complexity Low_complexity 3 52 0 188 67 33 0 chr3 17066504 17066534 -210458044 + (CA)n Simple_repeat Simple_repeat 2 32 0 825 201 23 0 chr3 17066556 17066730 -210457848 - L1MD2 LINE L1 -31 6328 6151 933 181 6 0 chr3 17070022 17070182 -210454396 + AluJb SINE Alu 135 295 -17 290 236 14 0 chr3 17070226 17070298 -210454280 + L1MB4 LINE L1 6100 6172 -8 21 0 0 0 chr3 17070300 17070321 -210454257 + AT_rich Low_complexity Low_complexity 1 21 0 1735 142 60 0 chr3 17071690 17071972 -210452606 + AluJb SINE Alu 1 299 -13 1861 147 0 3 chr3 17072113 17072405 -210452173 + AluJo SINE Alu 1 291 -21 347 224 0 0 chr3 17072537 17072613 -210451965 - MIR SINE MIR -112 150 75 2033 100 7 0 chr3 17073174 17073603 -210450975 + AluSx SINE Alu 1 431 0 489 338 26 13 chr3 17073699 17073959 -210450619 - L1ME LINE L1 -567 5603 5341 1616 191 108 32 chr3 17073967 17074401 -210450177 + MLT1C LTR MaLR 1 467 0 1482 165 68 28 chr3 17074662 17074983 -210449595 + L1MA5A LINE L1 5957 6290 -7 477 0 0 0 chr3 17074990 17075043 -210449535 + (TG)n Simple_repeat Simple_repeat 2 54 0 240 314 32 48 chr3 17075264 17075388 -210449190 - MIR SINE MIR -55 153 32 1898 133 21 0 chr3 17077521 17077806 -210446772 + AluSx SINE Alu 1 291 -21 243 287 69 10 chr3 17077965 17078066 -210446512 - L3 LINE CR1 -195 1382 1276 28 29 0 0 chr3 17078802 17078837 -210445741 + AT_rich Low_complexity Low_complexity 1 35 0 2273 67 3 0 chr3 17078968 17079252 -210445326 - AluY SINE Alu -26 285 1 2697 157 104 4 chr3 17080225 17080753 -210443825 - L1MB3 LINE L1 0 6183 5603 2062 125 0 16 chr3 17081269 17081572 -210443006 - AluSx SINE Alu -14 298 1 289 256 53 73 chr3 17084386 17084772 -210439806 + L1M1 LINE L1 5259 5572 -728 250 218 64 39 chr3 17084862 17084940 -210439638 - MLT1K LTR MaLR 0 588 509 234 0 0 0 chr3 17085125 17085151 -210439427 + (CCA)n Simple_repeat Simple_repeat 2 27 0 2103 103 10 3 chr3 17085355 17085655 -210438923 + AluSx SINE Alu 1 302 -10 265 268 87 58 chr3 17088917 17089055 -210435523 - MIR SINE MIR -57 205 64 21 0 0 0 chr3 17089085 17089106 -210435472 + AT_rich Low_complexity Low_complexity 1 21 0 2041 120 40 0 chr3 17089112 17089412 -210435166 + AluSx SINE Alu 1 312 0 203 241 121 0 chr3 17089619 17089677 -210434901 + L2 LINE L2 3207 3271 -1 27 62 0 0 chr3 17089766 17089814 -210434764 + AT_rich Low_complexity Low_complexity 1 48 0 2599 16 0 23 chr3 17089845 17090155 -210434423 + AluYb8 SINE Alu 1 303 -15 2235 105 0 0 chr3 17090228 17090532 -210434046 + AluSx SINE Alu 3 306 -6 710 167 125 0 chr3 17090933 17091077 -210433501 + MER5B DNA MER1_type 17 178 0 707 229 177 19 chr3 17091380 17091651 -210432927 + MER5C DNA MER1_type 1 314 -10 1315 170 8 13 chr3 17091969 17092204 -210432374 - MER46A DNA MER2_type 0 236 3 225 259 19 0 chr3 17092291 17092345 -210432233 + L2 LINE L2 3254 3308 -5 310 322 8 16 chr3 17092545 17092666 -210431912 + L1ME4a LINE L1 4549 4668 -1478 639 241 98 86 chr3 17093203 17093948 -210430630 + L1ME4a LINE L1 5267 6024 -97 522 0 0 0 chr3 17094432 17094490 -210430088 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 1538 157 46 29 chr3 17094490 17094771 -210429807 - AluJb SINE Alu -26 286 1 291 28 0 0 chr3 17095255 17095291 -210429287 + (CA)n Simple_repeat Simple_repeat 2 37 0 1932 133 36 0 chr3 17095602 17095903 -210428675 + AluSx SINE Alu 1 312 0 23 0 0 0 chr3 17096765 17096788 -210427790 + AT_rich Low_complexity Low_complexity 1 23 0 2037 98 0 3 chr3 17096952 17097237 -210427341 - AluSx SINE Alu -8 304 21 1763 264 72 14 chr3 17097829 17098397 -210426181 - L1ME3A LINE L1 -161 6009 5409 841 165 90 66 chr3 17098477 17098689 -210425889 + MER20 DNA MER1_type 1 217 -2 188 314 76 59 chr3 17098903 17099021 -210425557 - MIR SINE MIR -128 134 15 247 284 15 15 chr3 17099622 17099689 -210424889 + MER5B DNA MER1_type 2 68 -110 365 269 21 11 chr3 17100404 17100497 -210424081 + L2 LINE L2 3179 3272 0 260 365 52 9 chr3 17101599 17101714 -210422864 + MIR SINE MIR 16 135 -73 1768 156 0 10 chr3 17102457 17102764 -210421814 - AluJo SINE Alu -8 304 1 1529 157 6 80 chr3 17103536 17103860 -210420718 - pTR5 LTR ERV1 -860 1578 1279 5191 257 85 50 chr3 17104065 17104158 -210420420 + HAL1 LINE L1 118 206 -2301 3928 20 0 0 chr3 17104158 17104605 -210419973 - L1PA3 LINE L1 -1 6154 5708 5191 257 85 50 chr3 17104605 17105410 -210419168 + HAL1 LINE L1 206 982 -1525 2340 76 3 0 chr3 17105410 17105712 -210418866 + AluSg SINE Alu 1 303 -7 5191 257 85 50 chr3 17105712 17107109 -210417469 + HAL1 LINE L1 982 2494 -13 193 250 31 47 chr3 17107170 17107234 -210417344 - L2 LINE L2 -262 3010 2948 322 237 79 26 chr3 17108098 17108196 -210416382 - MLT1J LTR MaLR 0 511 408 802 200 82 0 chr3 17108196 17108366 -210416212 - MER3 DNA MER1_type 0 209 26 1694 114 0 81 chr3 17108400 17108697 -210415881 + AluSx SINE Alu 32 304 -8 228 167 0 0 chr3 17108700 17108736 -210415842 - MER3 DNA MER1_type -173 36 1 471 284 108 56 chr3 17108736 17108835 -210415743 - MLT1J LTR MaLR -96 415 323 1507 196 50 79 chr3 17108835 17108932 -210415646 - Charlie4a DNA MER1_type -1454 507 409 2095 113 0 3 chr3 17108932 17109233 -210415345 + AluSx SINE Alu 1 300 -12 1507 196 50 79 chr3 17109233 17109655 -210414923 - Charlie4a DNA MER1_type -1552 409 3 471 284 108 56 chr3 17109655 17109879 -210414699 - MLT1J LTR MaLR -188 323 75 239 167 51 90 chr3 17109915 17109993 -210414585 - MLT1L LTR MaLR -540 75 1 1321 71 157 0 chr3 17110177 17110374 -210414204 + MER30 DNA MER1_type 3 230 0 1301 180 43 29 chr3 17110406 17110684 -210413894 - AluJo SINE Alu -30 282 1 3578 139 267 26 chr3 17112808 17114627 -210409951 - pTR5 LTR ERV1 0 2606 1524 350 224 31 20 chr3 17114630 17114728 -210409850 - LTR30 LTR ERV1 -80 642 544 5008 117 51 73 chr3 17114728 17115741 -210408837 - pTR5 LTR ERV1 -413 2025 743 184 185 0 0 chr3 17115805 17115832 -210408746 - L2 LINE L2 -25 3288 3262 549 196 0 83 chr3 17115873 17116006 -210408572 - AluJb SINE Alu -88 224 103 540 305 56 19 chr3 17116008 17116221 -210408357 - MIR SINE MIR -41 221 1 1812 144 7 7 chr3 17116774 17117072 -210407506 - AluSg SINE Alu -12 298 1 1672 97 0 0 chr3 17117251 17117477 -210407101 - AluSx SINE Alu -25 287 62 21 36 0 0 chr3 17117961 17117989 -210406589 + AT_rich Low_complexity Low_complexity 1 28 0 208 314 0 0 chr3 17118012 17118063 -210406515 - L2 LINE L2 -17 3296 3246 3168 111 65 67 chr3 17118088 17118153 -210406425 + L1MC1 LINE L1 5344 5408 -925 1172 22 0 0 chr3 17118153 17118281 -210406297 + L1PA4 LINE L1 6015 6152 -3 3168 111 65 67 chr3 17118281 17118735 -210405843 + L1MC1 LINE L1 5408 5864 -469 1955 137 0 0 chr3 17118735 17119027 -210405551 + AluSx SINE Alu 1 292 -20 3168 111 65 67 chr3 17119027 17119119 -210405459 + L1MC1 LINE L1 5864 5955 -378 1235 120 5 0 chr3 17119120 17119304 -210405274 + AluSg/x SINE Alu 128 312 0 394 167 83 0 chr3 17119314 17119398 -210405180 + L1MC1 LINE L1 5950 6040 -293 271 327 82 64 chr3 17119402 17119732 -210404846 - L2 LINE L2 -78 3194 2859 2144 105 0 7 chr3 17120199 17120503 -210404075 + AluSc SINE Alu 1 302 -7 268 341 0 0 chr3 17120799 17120890 -210403688 + MIR3 SINE MIR 104 194 -14 234 132 0 0 chr3 17121213 17121251 -210403327 - MIR SINE MIR -101 161 124 2440 61 0 6 chr3 17121474 17121786 -210402792 - AluY SINE Alu -1 310 1 470 242 16 23 chr3 17122052 17122180 -210402398 - MIR SINE MIR -128 134 8 181 191 32 117 chr3 17122259 17122353 -210402225 + MIR SINE MIR 110 195 -67 182 252 0 171 chr3 17122977 17123100 -210401478 + MIR SINE MIR 119 220 -42 2432 70 0 0 chr3 17123475 17123777 -210400801 - AluY SINE Alu -9 302 1 569 296 17 17 chr3 17123899 17124071 -210400507 - MIR SINE MIR -75 187 16 447 275 70 7 chr3 17124804 17124946 -210399632 + MIR SINE MIR 32 182 -80 1564 158 0 90 chr3 17126404 17126739 -210397839 + AluJo SINE Alu 3 307 -5 279 0 0 0 chr3 17126957 17126988 -210397590 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1735 144 22 0 chr3 17126990 17127260 -210397318 - AluSx SINE Alu -36 276 1 189 0 0 0 chr3 17127378 17127399 -210397179 + (T)n Simple_repeat Simple_repeat 1 21 0 2165 104 0 0 chr3 17127486 17127784 -210396794 - AluSx SINE Alu -14 298 1 1855 150 0 7 chr3 17128039 17128339 -210396239 + AluJb SINE Alu 1 298 -14 623 260 101 56 chr3 17128388 17128904 -210395674 - L1M4 LINE L1 -1732 4414 3876 234 91 0 0 chr3 17128956 17128989 -210395589 + (TG)n Simple_repeat Simple_repeat 2 34 0 252 89 0 0 chr3 17128989 17129034 -210395544 + LTR66 LTR ERVL 394 438 -172 1966 127 21 0 chr3 17129040 17129323 -210395255 - AluSx SINE Alu -23 289 1 2270 81 0 3 chr3 17130473 17130769 -210393809 + AluSg SINE Alu 5 299 -11 1879 138 0 0 chr3 17132641 17132923 -210391655 + AluSx SINE Alu 21 302 -10 207 319 66 0 chr3 17133035 17133126 -210391452 - MIR SINE MIR -139 123 27 1777 154 30 3 chr3 17133513 17133811 -210390767 + AluJb SINE Alu 1 306 -6 350 268 0 12 chr3 17133826 17133908 -210390670 - MIR SINE MIR -6 256 176 188 65 0 32 chr3 17133969 17134000 -210390578 + (TCC)n Simple_repeat Simple_repeat 1 30 0 183 298 8 105 chr3 17134084 17134208 -210390370 - L2 LINE L2 0 3313 3202 1627 193 3 0 chr3 17134363 17134658 -210389920 + AluJb SINE Alu 1 296 -16 219 390 34 0 chr3 17134677 17134795 -210389783 + MIR SINE MIR 138 259 -3 208 330 22 22 chr3 17137209 17137300 -210387278 + L2 LINE L2 3137 3227 -45 657 280 92 62 chr3 17137933 17138032 -210386546 - MLT1J LTR MaLR -96 415 320 1507 196 50 79 chr3 17138032 17138129 -210386449 - Charlie4a DNA MER1_type -1454 507 409 2095 113 0 3 chr3 17138129 17138430 -210386148 + AluSx SINE Alu 1 300 -12 1507 196 50 79 chr3 17138430 17138852 -210385726 - Charlie4a DNA MER1_type -1552 409 3 657 280 92 62 chr3 17138852 17139084 -210385494 - MLT1J LTR MaLR -191 320 67 183 114 0 0 chr3 17139084 17139119 -210385459 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 657 280 92 62 chr3 17139119 17139189 -210385389 - MLT1J LTR MaLR -444 67 1 1333 71 152 0 chr3 17139373 17139571 -210385007 + MER30 DNA MER1_type 3 230 0 1301 180 43 29 chr3 17139603 17139881 -210384697 - AluJo SINE Alu -30 282 1 3662 145 264 23 chr3 17142006 17143825 -210380753 - pTR5 LTR ERV1 0 2606 1524 350 224 31 20 chr3 17143828 17143926 -210380652 - LTR30 LTR ERV1 -80 642 544 5014 116 51 73 chr3 17143926 17144938 -210379640 - pTR5 LTR ERV1 -413 2025 743 184 185 0 0 chr3 17145002 17145029 -210379549 - L2 LINE L2 -25 3288 3262 549 196 0 83 chr3 17145070 17145203 -210379375 - AluJb SINE Alu -88 224 103 442 296 66 28 chr3 17145205 17145418 -210379160 - MIR SINE MIR -41 221 1 2272 88 3 0 chr3 17145971 17146268 -210378310 - AluSg SINE Alu -12 298 1 1430 287 116 29 chr3 17146408 17147063 -210377515 - HAL1 LINE L1 -1596 911 200 2057 30 8 11 chr3 17147073 17147337 -210377241 + L1HS LINE L1 5708 5970 -185 255 353 8 38 chr3 17147674 17147807 -210376771 - MIR SINE MIR -61 147 19 300 301 0 11 chr3 17147845 17147913 -210376665 + GA-rich Low_complexity Low_complexity 1 69 -23 1735 191 42 26 chr3 17147913 17148295 -210376283 + MLT1B LTR MaLR 3 390 0 300 301 0 11 chr3 17148295 17148319 -210376259 + GA-rich Low_complexity Low_complexity 69 92 0 203 311 38 45 chr3 17150668 17150800 -210373778 + MIR SINE MIR 13 143 -119 1085 288 99 45 chr3 17151647 17152273 -210372305 - L1MC4 LINE L1 -1 8041 7382 256 186 0 0 chr3 17152604 17152647 -210371931 + L2 LINE L2 3224 3266 -6 346 113 0 0 chr3 17153657 17153710 -210370868 + L1MB8 LINE L1 6121 6173 -5 447 167 19 19 chr3 17153711 17153819 -210370759 - Charlie1 DNA MER1_type -60 2701 2594 252 341 38 8 chr3 17153907 17154039 -210370539 - L2 LINE L2 -255 3017 2882 691 274 49 10 chr3 17156842 17157046 -210367532 - MIR SINE MIR -44 218 7 4690 156 54 6 chr3 17157912 17158853 -210365725 - L1MB7 LINE L1 -8 6176 5193 984 228 30 25 chr3 17160058 17160295 -210364283 + MER8 DNA MER2_type 2 239 0 1986 125 14 3 chr3 17160495 17160792 -210363786 - AluJb SINE Alu -10 302 3 322 350 49 14 chr3 17160844 17160987 -210363591 + MER5A DNA MER1_type 1 148 -41 206 269 0 0 chr3 17161321 17161373 -210363205 + MIR SINE MIR 100 151 -111 1553 167 17 6 chr3 17162484 17162828 -210361750 + L1MB8 LINE L1 5768 6177 -1 352 264 80 25 chr3 17163750 17163913 -210360665 + MARNA DNA Mariner 70 241 -345 396 0 0 0 chr3 17163955 17163999 -210360579 + (CA)n Simple_repeat Simple_repeat 2 45 0 330 26 0 0 chr3 17163998 17164037 -210360541 + (TC)n Simple_repeat Simple_repeat 1 39 0 * 2101 92 0 54 chr3 17164081 17164397 -210360181 + AluSq SINE Alu 3 301 -12 936 202 62 44 chr3 17164665 17164885 -210359693 + L1MA6 LINE L1 6024 6251 -49 2193 106 3 3 chr3 17164885 17165196 -210359382 + AluSp SINE Alu 1 311 -2 936 202 62 44 chr3 17165196 17165247 -210359331 + L1MA6 LINE L1 6251 6300 0 2364 72 0 0 chr3 17165318 17165622 -210358956 + AluY SINE Alu 1 304 -7 388 259 208 23 chr3 17165884 17166100 -210358478 + L1ME4a LINE L1 5866 6121 0 1796 81 60 25 chr3 17166263 17166548 -210358030 + AluSx SINE Alu 11 305 -7 969 199 84 146 chr3 17167026 17167140 -210357438 + L1ME3A LINE L1 5412 5532 -630 2183 99 0 3 chr3 17167140 17167452 -210357126 + AluSq SINE Alu 1 311 -2 969 199 84 146 chr3 17167452 17168057 -210356521 + L1ME3A LINE L1 5532 6067 -95 1336 199 84 47 chr3 17168094 17168497 -210356081 + MER95 LTR ERV 14 431 0 1877 134 34 0 chr3 17168818 17169116 -210355462 + AluSx SINE Alu 1 308 -4 594 251 41 23 chr3 17169493 17169664 -210354914 + L2 LINE L2 3125 3298 -15 182 279 0 0 chr3 17169889 17169932 -210354646 + MIR SINE MIR 61 103 -105 2284 80 0 10 chr3 17170164 17170476 -210354102 + AluSc SINE Alu 1 309 0 663 356 69 21 chr3 17170787 17171352 -210353226 + L2 LINE L2 2140 2731 -583 1873 134 20 0 chr3 17171456 17171748 -210352830 - AluSx SINE Alu -14 298 1 300 295 173 35 chr3 17173899 17174072 -210350506 + L1ME3A LINE L1 5965 6161 -9 202 216 0 0 chr3 17175291 17175328 -210349250 + CT-rich Low_complexity Low_complexity 2 38 0 2112 100 0 10 chr3 17176366 17176666 -210347912 + AluSx SINE Alu 1 297 -15 280 293 28 99 chr3 17176684 17176865 -210347713 + MIR3 SINE MIR 19 186 -22 357 267 86 26 chr3 17176973 17177089 -210347489 - L2 LINE L2 -5 3267 3145 2311 83 3 0 chr3 17177611 17177913 -210346665 + AluSq SINE Alu 1 303 -10 1879 138 0 0 chr3 17179786 17180068 -210344510 + AluSx SINE Alu 21 302 -10 216 308 66 0 chr3 17180180 17180271 -210344307 - MIR SINE MIR -139 123 27 1769 155 30 3 chr3 17180658 17180955 -210343623 + AluJb SINE Alu 1 305 -7 350 268 0 12 chr3 17180970 17181052 -210343526 - MIR SINE MIR -6 256 176 188 65 0 32 chr3 17181113 17181144 -210343434 + (TCC)n Simple_repeat Simple_repeat 1 30 0 2104 57 0 11 chr3 17181408 17181691 -210342887 - AluY SINE Alu -31 280 1 732 264 187 29 chr3 17181963 17182248 -210342330 - L2 LINE L2 0 3313 3074 2217 63 13 7 chr3 17182248 17182548 -210342030 + AluY SINE Alu 1 302 -9 732 264 187 29 chr3 17182548 17182929 -210341649 - L2 LINE L2 -239 3074 2440 213 309 91 42 chr3 17183191 17183498 -210341080 + L2 LINE L2 2050 2371 -943 2221 103 0 3 chr3 17184122 17184433 -210340145 - AluSx SINE Alu -2 310 1 230 260 83 42 chr3 17185373 17185469 -210339109 - L2 LINE L2 -64 3208 3109 2401 78 7 0 chr3 17185484 17185828 -210338750 - AluSq SINE Alu 0 346 1 24 0 0 0 chr3 17186451 17186475 -210338103 + AT_rich Low_complexity Low_complexity 1 24 0 1959 133 0 3 chr3 17187051 17187395 -210337183 - AluSx SINE Alu 0 312 1 391 307 70 35 chr3 17187747 17187975 -210336603 + MLT1K LTR MaLR 345 580 -8 545 244 45 61 chr3 17188233 17188472 -210336106 + MLT1L LTR MaLR 105 407 -197 2027 132 3 0 chr3 17189060 17189371 -210335207 + AluSx SINE Alu 1 312 0 335 69 0 69 chr3 17189509 17189567 -210335011 - MADE1 DNA Mariner -26 54 1 1956 106 48 0 chr3 17189593 17189885 -210334693 + AluSx SINE Alu 1 306 -6 691 286 17 6 chr3 17189981 17190156 -210334422 + MIR3 SINE MIR 21 197 -11 410 162 0 0 chr3 17190543 17190611 -210333967 - Alu SINE Alu -5 307 240 2391 53 0 7 chr3 17190726 17191027 -210333551 - AluY SINE Alu -1 310 12 189 0 0 0 chr3 17191085 17191106 -210333472 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 608 220 57 0 chr3 17191284 17191425 -210333153 + MER5A DNA MER1_type 9 157 -32 342 331 31 8 chr3 17191576 17191703 -210332875 - L2 LINE L2 -3 3310 3181 203 346 70 39 chr3 17191900 17192056 -210332522 + L2 LINE L2 3103 3263 -9 818 151 66 0 chr3 17192128 17192280 -210332298 + FRAM SINE Alu 1 161 -15 1361 186 90 4 chr3 17192560 17192839 -210331739 - AluJb SINE Alu -9 303 1 221 246 368 0 chr3 17193171 17193285 -210331293 + MIR3 SINE MIR 39 194 -14 2087 98 18 0 chr3 17193639 17193925 -210330653 + AluSx SINE Alu 1 291 -21 326 235 0 0 chr3 17194213 17194281 -210330297 - MER5A DNA MER1_type -83 106 39 1058 185 95 18 chr3 17194316 17194538 -210330040 + MER8 DNA MER2_type 1 239 0 666 40 0 0 chr3 17195264 17195339 -210329239 - pTR5 LTR ERV1 -2298 140 66 350 224 31 20 chr3 17195339 17195437 -210329141 - LTR30 LTR ERV1 -80 642 544 4996 117 51 73 chr3 17195437 17196449 -210328129 - pTR5 LTR ERV1 -413 2025 743 184 185 0 0 chr3 17196513 17196540 -210328038 - L2 LINE L2 -25 3288 3262 549 196 0 83 chr3 17196581 17196714 -210327864 - AluJb SINE Alu -88 224 103 540 305 56 19 chr3 17196716 17196929 -210327649 - MIR SINE MIR -41 221 1 2184 104 0 0 chr3 17197482 17197780 -210326798 - AluSg SINE Alu -12 298 1 210 143 0 0 chr3 17197934 17197969 -210326609 + (TG)n Simple_repeat Simple_repeat 2 36 0 2082 93 0 3 chr3 17197970 17198259 -210326319 - AluSq SINE Alu -25 288 1 1796 81 60 25 chr3 17198851 17199136 -210325442 - AluSx SINE Alu -7 305 11 388 259 208 23 chr3 17199299 17199515 -210325063 - L1ME4a LINE L1 0 6121 5866 2364 72 0 0 chr3 17199777 17200081 -210324497 - AluY SINE Alu -7 304 1 930 202 62 44 chr3 17200152 17200203 -210324375 - L1MA6 LINE L1 0 6300 6251 2228 107 3 0 chr3 17200203 17200513 -210324065 - AluSp SINE Alu -2 311 1 930 202 62 44 chr3 17200513 17200733 -210323845 - L1MA6 LINE L1 -49 6251 6024 1713 96 0 63 chr3 17201001 17201271 -210323307 - AluSq SINE Alu -12 301 49 269 202 82 13 chr3 17201361 17201461 -210323117 + L1ME3 LINE L1 5590 5700 -464 239 176 0 59 chr3 17201479 17201547 -210323031 + L1MB4 LINE L1 6117 6180 0 906 236 142 36 chr3 17201552 17201882 -210322696 + L1ME3 LINE L1 5703 6067 -95 1336 199 84 47 chr3 17201919 17202322 -210322256 + MER95 LTR ERV 14 431 0 1877 134 34 0 chr3 17202643 17202941 -210321637 + AluSx SINE Alu 1 308 -4 594 251 41 23 chr3 17203318 17203489 -210321089 + L2 LINE L2 3125 3298 -15 182 279 0 0 chr3 17203714 17203757 -210320821 + MIR SINE MIR 61 103 -105 2284 80 0 10 chr3 17203989 17204301 -210320277 + AluSc SINE Alu 1 309 0 663 356 69 21 chr3 17204612 17205177 -210319401 + L2 LINE L2 2140 2731 -583 1873 134 20 0 chr3 17205281 17205573 -210319005 - AluSx SINE Alu -14 298 1 300 295 173 35 chr3 17207725 17207898 -210316680 + L1ME3A LINE L1 5965 6161 -9 202 216 0 0 chr3 17209117 17209154 -210315424 + CT-rich Low_complexity Low_complexity 2 38 0 2084 103 0 10 chr3 17210192 17210492 -210314086 + AluSx SINE Alu 1 297 -15 449 250 7 37 chr3 17211361 17211497 -210313081 + L1MC4 LINE L1 7911 8042 0 1551 154 98 31 chr3 17211610 17211928 -210312650 - MER2 DNA MER2_type -6 339 1 384 309 79 0 chr3 17213329 17213481 -210311097 - L2 LINE L2 -5 3267 3104 1425 232 41 19 chr3 17214772 17215138 -210309440 - MLT1A2 LTR MaLR 0 374 1 237 253 138 0 chr3 17215140 17215227 -210309351 + MER103 DNA DNA 3 101 -65 432 0 0 0 chr3 17215827 17215875 -210308703 + (TG)n Simple_repeat Simple_repeat 2 49 0 785 274 79 8 chr3 17217832 17218073 -210306505 + MIR SINE MIR 3 260 -2 189 0 0 0 chr3 17218735 17218756 -210305822 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 182 273 0 18 chr3 17219246 17219301 -210305277 - L2 LINE L2 -4 3309 3256 324 244 16 81 chr3 17219519 17219642 -210304936 + MIR SINE MIR 138 252 -10 1254 274 139 52 chr3 17219768 17220043 -210304535 + L1MC4a LINE L1 5600 5850 -1958 2211 82 3 0 chr3 17220043 17220357 -210304221 + AluSp SINE Alu 1 313 0 1254 274 139 52 chr3 17220357 17220419 -210304159 + L1MC4a LINE L1 5850 5905 -1903 6453 26 4 0 chr3 17220419 17221157 -210303421 + L1PA3 LINE L1 5412 6152 -3 1254 274 139 52 chr3 17221157 17221785 -210302793 + L1MC4a LINE L1 5905 6650 -1158 926 173 113 16 chr3 17221786 17221971 -210302607 + MER3 DNA MER1_type 1 203 -6 972 226 16 41 chr3 17222035 17222278 -210302300 + L1MC4 LINE L1 6751 6987 -1055 1980 182 75 27 chr3 17222584 17223024 -210301554 + LOR1b LTR ERV1 1 461 0 1867 136 7 10 chr3 17223197 17223492 -210301086 - AluSx SINE Alu -18 294 1 1624 175 0 7 chr3 17223666 17223957 -210300621 - AluJo SINE Alu -23 289 1 24 0 0 0 chr3 17224434 17224458 -210300120 + AT_rich Low_complexity Low_complexity 1 24 0 2181 97 3 0 chr3 17224686 17224984 -210299594 - AluSx SINE Alu -13 299 1 258 238 36 24 chr3 17225719 17225803 -210298775 + MIR SINE MIR 65 149 -113 2215 145 31 151 chr3 17225857 17226362 -210298216 - L1M4 LINE L1 -370 5808 5244 1629 164 48 10 chr3 17226362 17226654 -210297924 - AluJb SINE Alu -7 305 3 2215 145 31 151 chr3 17226654 17226710 -210297868 - L1M4 LINE L1 -934 5244 5183 420 114 0 29 chr3 17226710 17226780 -210297798 - FLAM_A SINE Alu -4 138 71 2215 145 31 151 chr3 17226780 17226952 -210297626 - L1M4 LINE L1 -995 5183 5100 1022 303 110 22 chr3 17227021 17227559 -210297019 - L1MC4a LINE L1 -1762 6046 5462 378 202 23 41 chr3 17227602 17227766 -210296812 - L1ME2 LINE L1 -15 6149 5870 * 1024 184 116 15 chr3 17227764 17228031 -210296547 - L1MA9 LINE L1 -33 6279 5986 * 1873 245 91 6 chr3 17228030 17228780 -210295798 - L1ME2 LINE L1 -273 5891 5081 338 264 83 70 chr3 17228775 17228914 -210295664 - L1MC4a LINE L1 -747 5399 5263 * 1601 151 21 14 chr3 17228914 17229193 -210295385 - AluJb SINE Alu -14 298 18 338 264 83 70 chr3 17229193 17229579 -210294999 - L1MC4a LINE L1 -883 5263 4889 809 148 0 28 chr3 17230100 17230242 -210294336 - FLAM_C SINE Alu -5 138 1 2216 110 0 0 chr3 17230253 17230561 -210294017 - AluSx SINE Alu -4 308 1 350 270 101 14 chr3 17230750 17230898 -210293680 - L1ME LINE L1 -504 5617 5457 284 307 193 0 chr3 17231707 17231873 -210292705 + MIR SINE MIR 59 256 -6 234 0 0 0 chr3 17233747 17233773 -210290805 + (CCA)n Simple_repeat Simple_repeat 2 27 0 2129 127 10 0 chr3 17233977 17234269 -210290309 + AluSx SINE Alu 1 295 -17 186 43 0 0 chr3 17234269 17234292 -210290286 + (GA)n Simple_repeat Simple_repeat 2 24 0 479 243 7 37 chr3 17235020 17235156 -210289422 + L1MC4 LINE L1 7911 8042 0 1595 148 98 31 chr3 17235269 17235587 -210288991 - MER2 DNA MER2_type -6 339 1 322 309 79 0 chr3 17236988 17237140 -210287438 - L2 LINE L2 -5 3267 3104 1412 232 41 19 chr3 17238431 17238797 -210285781 - MLT1A2 LTR MaLR 0 374 1 233 253 138 0 chr3 17238799 17238886 -210285692 + MER103 DNA DNA 3 101 -65 432 0 0 0 chr3 17239486 17239534 -210285044 + (TG)n Simple_repeat Simple_repeat 2 49 0 672 267 80 9 chr3 17241491 17241716 -210282862 + MIR SINE MIR 3 243 -19 189 0 0 0 chr3 17242394 17242415 -210282163 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 291 250 12 0 chr3 17243221 17243301 -210281277 + MIR SINE MIR 172 252 -10 1210 268 148 54 chr3 17243488 17243702 -210280876 + L1MC4a LINE L1 5660 5853 -1955 2339 82 3 0 chr3 17243702 17244016 -210280562 + AluSp SINE Alu 1 313 0 1210 268 148 54 chr3 17244016 17244078 -210280500 + L1MC4a LINE L1 5853 5908 -1900 6470 26 4 0 chr3 17244078 17244816 -210279762 + L1PA3 LINE L1 5412 6152 -3 1210 268 148 54 chr3 17244816 17245444 -210279134 + L1MC4a LINE L1 5908 6650 -1158 928 173 113 16 chr3 17245445 17245630 -210278948 + MER3 DNA MER1_type 1 203 -6 1119 221 111 47 chr3 17245694 17246038 -210278540 + L1MC4 LINE L1 6751 7116 -926 1980 182 75 27 chr3 17246241 17246681 -210277897 + LOR1b LTR ERV1 1 461 0 1986 136 7 10 chr3 17246854 17247149 -210277429 - AluSx SINE Alu -18 294 1 1738 175 0 7 chr3 17247323 17247614 -210276964 - AluJo SINE Alu -23 289 1 24 0 0 0 chr3 17248091 17248115 -210276463 + AT_rich Low_complexity Low_complexity 1 24 0 2120 113 3 10 chr3 17248343 17248644 -210275934 - AluSx SINE Alu -13 299 1 246 242 263 0 chr3 17248703 17248802 -210275776 - MIR SINE MIR -19 243 119 448 259 28 99 chr3 17248945 17249157 -210275421 - MIR SINE MIR -33 229 33 283 237 32 43 chr3 17249992 17250085 -210274493 - MIR SINE MIR -61 147 56 251 270 50 20 chr3 17253096 17253196 -210271382 - MIR SINE MIR -62 146 44 358 251 64 47 chr3 17253434 17253605 -210270973 + MIR3 SINE MIR 33 206 -2 1150 180 81 25 chr3 17254676 17254796 -210269782 + L1MB8 LINE L1 5258 5370 -814 2211 116 48 22 chr3 17254796 17255151 -210269427 - THE1B LTR MaLR 0 364 1 1150 180 81 25 chr3 17255151 17255314 -210269264 + L1MB8 LINE L1 5370 5557 -627 1687 111 6 102 chr3 17255317 17255632 -210268946 + LTR12 LTR ERV1 1 285 -429 310 234 64 0 chr3 17255633 17255727 -210268851 + LTR30 LTR ERV1 553 652 -70 763 71 0 0 chr3 17255727 17255825 -210268753 + LTR12 LTR ERV1 617 714 0 2898 185 27 12 chr3 17255837 17256433 -210268145 + L1MB8 LINE L1 5569 6173 -5 382 256 68 8 chr3 17257506 17257639 -210266939 + MER104 DNA Tc2 1 141 -39 2094 111 0 20 chr3 17257692 17257990 -210266588 - AluSx SINE Alu -20 292 1 292 357 9 0 chr3 17259747 17259859 -210264719 - MIR SINE MIR -61 147 35 242 266 0 16 chr3 17259916 17259980 -210264598 + GA-rich Low_complexity Low_complexity 1 63 0 1456 224 45 29 chr3 17259984 17260363 -210264215 + MLT1B LTR MaLR 3 387 -3 1100 291 96 42 chr3 17263021 17263647 -210260931 - L1MC4 LINE L1 -1 8041 7382 239 186 0 0 chr3 17263978 17264021 -210260557 + L2 LINE L2 3224 3266 -6 351 113 0 0 chr3 17265031 17265084 -210259494 + L1MB8 LINE L1 6121 6173 -5 458 167 19 19 chr3 17265085 17265193 -210259385 - Charlie1 DNA MER1_type -60 2701 2594 215 341 38 8 chr3 17265281 17265413 -210259165 - L2 LINE L2 -255 3017 2882 616 270 49 10 chr3 17268215 17268419 -210256159 - MIR SINE MIR -44 218 7 4716 157 54 6 chr3 17269285 17270226 -210254352 - L1MB7 LINE L1 -8 6176 5193 998 224 30 25 chr3 17271429 17271666 -210252912 + MER8 DNA MER2_type 2 239 0 2114 122 14 3 chr3 17271866 17272161 -210252417 - AluJb SINE Alu -12 300 3 276 340 10 10 chr3 17272213 17272313 -210252265 + MER5A DNA MER1_type 1 100 -89 1567 167 17 6 chr3 17273852 17274196 -210250382 + L1MB8 LINE L1 5768 6177 -1 355 264 80 25 chr3 17275118 17275281 -210249297 + MARNA DNA Mariner 70 241 -345 270 0 0 0 chr3 17275323 17275353 -210249225 + (CA)n Simple_repeat Simple_repeat 2 31 0 180 0 0 0 chr3 17275352 17275372 -210249206 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 2253 93 0 53 chr3 17275419 17275740 -210248838 + AluSq SINE Alu 3 306 -7 971 195 62 44 chr3 17276008 17276228 -210248350 + L1MA6 LINE L1 6024 6251 -49 2355 107 3 0 chr3 17276228 17276538 -210248040 + AluSp SINE Alu 1 311 -2 971 195 62 44 chr3 17276538 17276589 -210247989 + L1MA6 LINE L1 6251 6300 0 2511 69 0 0 chr3 17276660 17276964 -210247614 + AluY SINE Alu 1 304 -7 1950 77 59 25 chr3 17277606 17277892 -210246686 + AluSx SINE Alu 11 306 -6 974 194 88 150 chr3 17278370 17278484 -210246094 + L1ME3A LINE L1 5412 5532 -630 2309 99 0 3 chr3 17278484 17278796 -210245782 + AluSq SINE Alu 1 311 -2 974 194 88 150 chr3 17278796 17279401 -210245177 + L1ME3A LINE L1 5532 6067 -95 1345 199 84 47 chr3 17279438 17279841 -210244737 + MER95 LTR ERV 14 431 0 1852 136 37 0 chr3 17280162 17280460 -210244118 + AluSx SINE Alu 1 308 0 523 251 41 23 chr3 17280836 17281007 -210243571 + L2 LINE L2 3125 3298 -15 2411 80 0 10 chr3 17281507 17281819 -210242759 + AluSc SINE Alu 1 309 0 499 350 68 23 chr3 17282130 17282659 -210241919 + L2 LINE L2 2140 2692 -622 1998 133 20 0 chr3 17282799 17283092 -210241486 - AluSx SINE Alu -13 299 1 201 345 43 7 chr3 17283170 17283309 -210241269 - L2 LINE L2 -1365 1949 1806 202 216 0 0 chr3 17286636 17286673 -210237905 + CT-rich Low_complexity Low_complexity 2 38 0 2240 100 0 10 chr3 17287711 17288011 -210236567 + AluSx SINE Alu 1 297 -15 231 288 38 12 chr3 17288130 17288210 -210236368 + MIR3 SINE MIR 105 186 -22 310 267 86 26 chr3 17288318 17288434 -210236144 - L2 LINE L2 -5 3267 3145 2326 99 3 0 chr3 17288956 17289259 -210235319 + AluSq SINE Alu 1 304 -9 191 277 76 42 chr3 17292520 17292639 -210231939 - MIR SINE MIR -76 186 64 21 0 0 0 chr3 17292669 17292690 -210231888 + AT_rich Low_complexity Low_complexity 1 21 0 2163 120 40 0 chr3 17292696 17292996 -210231582 + AluSx SINE Alu 1 312 0 182 259 121 0 chr3 17293203 17293261 -210231317 + L2 LINE L2 3207 3271 -1 27 62 0 0 chr3 17293350 17293398 -210231180 + AT_rich Low_complexity Low_complexity 1 48 0 2736 16 0 23 chr3 17293429 17293739 -210230839 + AluYb8 SINE Alu 1 303 -15 2347 109 0 0 chr3 17293812 17294116 -210230462 + AluSx SINE Alu 3 306 -6 641 167 125 0 chr3 17294517 17294661 -210229917 + MER5B DNA MER1_type 17 178 0 541 233 177 19 chr3 17294964 17295235 -210229343 + MER5C DNA MER1_type 1 314 -10 1324 170 8 13 chr3 17295553 17295788 -210228790 - MER46A DNA MER2_type 0 236 3 204 209 0 0 chr3 17295886 17295929 -210228649 + L2 LINE L2 3266 3308 -5 664 235 103 91 chr3 17296787 17297532 -210227046 + L1ME4a LINE L1 5267 6024 -97 522 0 0 0 chr3 17298016 17298074 -210226504 + (GTTTG)n Simple_repeat Simple_repeat 2 59 0 1648 157 46 29 chr3 17298074 17298355 -210226223 - AluJb SINE Alu -26 286 1 291 28 0 0 chr3 17298839 17298875 -210225703 + (CA)n Simple_repeat Simple_repeat 2 37 0 2018 136 36 0 chr3 17299186 17299487 -210225091 + AluSx SINE Alu 1 312 0 23 0 0 0 chr3 17300349 17300372 -210224206 + AT_rich Low_complexity Low_complexity 1 23 0 2073 109 0 3 chr3 17300536 17300821 -210223757 - AluSx SINE Alu -8 304 21 1754 264 72 14 chr3 17301413 17301981 -210222597 - L1ME3A LINE L1 -161 6009 5409 838 165 90 66 chr3 17302061 17302273 -210222305 + MER20 DNA MER1_type 1 217 -2 219 284 15 15 chr3 17303206 17303273 -210221305 + MER5B DNA MER1_type 2 68 -110 330 269 21 11 chr3 17303988 17304081 -210220497 + L2 LINE L2 3179 3272 0 223 365 52 9 chr3 17305183 17305298 -210219280 + MIR SINE MIR 16 135 -73 1414 201 7 17 chr3 17306058 17306351 -210218227 - AluJo SINE Alu -22 290 1 1645 172 3 3 chr3 17356457 17356742 -210167836 - AluJb SINE Alu -27 285 1 2302 82 3 13 chr3 17356748 17357064 -210167514 - AluSp SINE Alu 0 313 1 255 149 21 0 chr3 17357071 17357118 -210167460 + L1MD1 LINE L1 6182 6229 -13 371 229 119 37 chr3 17357209 17357318 -210167260 - L2 LINE L2 -8 3305 3188 237 214 71 0 chr3 17357445 17357501 -210167077 + MIR SINE MIR 196 255 -7 2275 85 3 0 chr3 17357704 17358009 -210166569 + AluSq SINE Alu 1 306 -7 223 245 0 20 chr3 17358297 17358346 -210166232 + polypyrimidine Low_complexity Low_complexity 1 48 0 838 170 0 22 chr3 17358346 17358608 -210165970 + CT-rich Low_complexity Low_complexity 1 256 0 1664 171 0 4 chr3 17358608 17358882 -210165696 - AluJb SINE Alu -39 273 1 231 331 150 24 chr3 17359382 17359509 -210165069 + MIR3 SINE MIR 18 160 -48 341 213 43 32 chr3 17359546 17359640 -210164938 + MER117 DNA MER1_type 56 150 -47 2159 113 6 3 chr3 17359662 17359973 -210164605 + AluSx SINE Alu 1 312 0 784 326 8 12 chr3 17360179 17360424 -210164154 - MIR SINE MIR 0 262 19 342 247 12 12 chr3 17360450 17360531 -210164047 + MER5A DNA MER1_type 25 105 -84 213 309 91 42 chr3 17360859 17361166 -210163412 - L2 LINE L2 -943 2371 2050 709 274 189 28 chr3 17361428 17361808 -210162770 + L2 LINE L2 2440 2757 -556 2371 47 10 7 chr3 17361808 17362109 -210162469 - AluY SINE Alu -9 302 1 709 274 189 28 chr3 17362109 17362393 -210162185 + L2 LINE L2 2757 3313 0 2664 26 0 0 chr3 17362665 17362976 -210161602 + AluY SINE Alu 1 311 0 410 162 0 0 chr3 17363090 17363158 -210161420 + Alu SINE Alu 240 307 -5 691 286 17 6 chr3 17363545 17363720 -210160858 - MIR3 SINE MIR -11 197 21 1956 106 48 0 chr3 17363816 17364108 -210160470 - AluSx SINE Alu -6 306 1 335 69 0 69 chr3 17364134 17364192 -210160386 + MADE1 DNA Mariner 1 54 -26 2027 132 3 0 chr3 17364330 17364641 -210159937 - AluSx SINE Alu 0 312 1 545 244 45 61 chr3 17365229 17365468 -210159110 - MLT1L LTR MaLR -197 314 105 391 307 70 35 chr3 17365726 17365954 -210158624 - MLT1K LTR MaLR -8 580 345 1959 133 0 3 chr3 17366306 17366650 -210157928 + AluSx SINE Alu 1 312 0 24 0 0 0 chr3 17367226 17367250 -210157328 + AT_rich Low_complexity Low_complexity 1 24 0 201 189 38 0 chr3 17367366 17367419 -210157159 + (CAA)n Simple_repeat Simple_repeat 3 57 0 353 262 29 19 chr3 17367761 17367864 -210156714 - MIR SINE MIR -108 154 51 2373 57 3 3 chr3 17367900 17368197 -210156381 - AluY SINE Alu -14 297 1 2315 73 3 10 chr3 17368448 17368796 -210155782 + AluSp SINE Alu 1 346 0 230 260 83 42 chr3 17368811 17368907 -210155671 + L2 LINE L2 3109 3208 -64 1768 156 0 10 chr3 17369847 17370154 -210154424 + AluJo SINE Alu 1 304 -8 260 365 52 9 chr3 17370897 17371012 -210153566 - MIR SINE MIR -73 135 16 365 269 21 11 chr3 17372114 17372207 -210152371 - L2 LINE L2 0 3272 3179 247 284 15 15 chr3 17372922 17372989 -210151589 - MER5B DNA MER1_type -110 68 2 188 314 76 59 chr3 17373590 17373708 -210150870 + MIR SINE MIR 15 134 -128 841 165 90 66 chr3 17373922 17374134 -210150444 - MER20 DNA MER1_type -2 217 1 1361 186 90 4 chr3 17374293 17374572 -210150006 + AluJb SINE Alu 1 303 -9 818 151 66 0 chr3 17374852 17375004 -210149574 - FRAM SINE Alu -15 161 1 203 346 70 39 chr3 17375076 17375232 -210149346 - L2 LINE L2 -9 3263 3103 342 331 31 8 chr3 17375429 17375556 -210149022 + L2 LINE L2 3181 3310 -3 608 220 57 0 chr3 17375707 17375848 -210148730 - MER5A DNA MER1_type -32 157 9 189 0 0 0 chr3 17376026 17376047 -210148531 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 2136 101 0 3 chr3 17376105 17376402 -210148176 + AluSx SINE Alu 12 307 -5 2967 142 12 8 chr3 17376943 17377458 -210147120 + L1MB3 LINE L1 5660 6176 -7 2255 196 88 70 chr3 17377475 17377617 -210146961 + L1ME2 LINE L1 5429 5567 -597 2297 56 7 13 chr3 17377617 17377920 -210146658 + AluY SINE Alu 1 301 -10 2255 196 88 70 chr3 17377920 17378231 -210146347 + L1ME2 LINE L1 5567 5871 -293 1624 159 52 4 chr3 17378231 17378534 -210146044 - AluJo SINE Alu 0 316 1 2255 196 88 70 chr3 17378534 17378666 -210145912 + L1ME2 LINE L1 5871 5999 -165 2006 122 3 0 chr3 17378666 17378960 -210145618 - AluSx SINE Alu -17 295 1 2255 196 88 70 chr3 17378960 17379084 -210145494 + L1ME2 LINE L1 5999 6154 -10 1839 138 17 7 chr3 17379089 17379386 -210145192 + AluJo SINE Alu 5 304 -8 1096 176 75 24 chr3 17379561 17379816 -210144762 + ORSL DNA AcHobo 6 273 -2 2217 73 0 0 chr3 17379942 17380230 -210144348 + AluY SINE Alu 24 311 0 235 359 0 0 chr3 17380410 17380474 -210144104 - L2 LINE L2 -3 3310 3247 295 287 0 21 chr3 17380509 17380603 -210143975 - MIR3 SINE MIR -108 100 9 26 30 0 0 chr3 17380895 17380928 -210143650 + AT_rich Low_complexity Low_complexity 1 33 0 5857 142 77 39 chr3 17381015 17381618 -210142960 - Tigger3b DNA MER2_type -1797 1231 652 2142 95 3 0 chr3 17381618 17381912 -210142666 - AluSg SINE Alu -15 295 1 5857 142 77 39 chr3 17381912 17382494 -210142084 - Tigger3b DNA MER2_type -2376 652 1 27 0 0 0 chr3 17382564 17382591 -210141987 + AT_rich Low_complexity Low_complexity 1 27 0 615 108 0 0 chr3 17382627 17382710 -210141868 - AluJb SINE Alu -35 277 195 1979 117 0 17 chr3 17382959 17383257 -210141321 + AluSx SINE Alu 1 293 -19 326 235 0 0 chr3 17383600 17383668 -210140910 - MER5A DNA MER1_type -83 106 39 1058 185 95 18 chr3 17383703 17383925 -210140653 + MER8 DNA MER2_type 1 239 0 181 300 38 25 chr3 17384890 17384925 -210139653 - MIR3 SINE MIR -14 194 161 200 179 51 0 chr3 17384925 17384964 -210139614 - L2 LINE L2 -2128 1186 1146 2123 246 154 43 chr3 17385249 17386002 -210138576 + HAL1 LINE L1 661 1568 -939 2448 90 7 0 chr3 17386002 17386312 -210138266 + AluSx SINE Alu 1 312 0 2123 246 154 43 chr3 17386312 17386621 -210137957 + HAL1 LINE L1 1568 1841 -666 398 243 69 58 chr3 17386672 17386861 -210137717 - MIR SINE MIR -26 236 46 2222 114 0 13 chr3 17387330 17387645 -210136933 + AluSx SINE Alu 1 311 -1 2527 53 0 26 chr3 17388376 17388714 -210135864 + AluY SINE Alu 1 330 0 32 26 0 0 chr3 17389193 17389232 -210135346 + AT_rich Low_complexity Low_complexity 1 39 0 1726 172 14 17 chr3 17389548 17389845 -210134733 - AluJb SINE Alu -16 296 1 1695 101 141 25 chr3 17389929 17390206 -210134372 + AluSx SINE Alu 1 309 -3 223 231 64 13 chr3 17390364 17390442 -210134136 - L2 LINE L2 -310 3003 2922 1743 147 3 42 chr3 17390554 17390698 -210133880 + AluSx SINE Alu 1 130 -182 2450 91 0 3 chr3 17390698 17391006 -210133572 + AluSx SINE Alu 1 307 -5 1743 147 3 42 chr3 17391006 17391147 -210133431 + AluSx SINE Alu 130 275 -37 383 313 91 5 chr3 17391232 17391430 -210133148 + L3 LINE CR1 1339 1553 -24 2488 110 3 29 chr3 17391502 17391522 -210133056 + L1P5 LINE L1 5421 5440 -714 2008 94 83 0 chr3 17391522 17391798 -210132780 + AluSx SINE Alu 1 299 -13 2488 110 3 29 chr3 17391798 17392151 -210132427 + L1P5 LINE L1 5440 5784 -370 1391 137 24 0 chr3 17392151 17392356 -210132222 + AluSx SINE Alu 59 268 -44 1969 150 7 0 chr3 17392508 17392794 -210131784 + AluSx SINE Alu 4 291 -21 1930 163 0 20 chr3 17392956 17393257 -210131321 - AluJo SINE Alu -17 295 1 243 0 0 0 chr3 17393307 17393334 -210131244 + (TG)n Simple_repeat Simple_repeat 2 28 0 3141 139 29 0 chr3 17393408 17393777 -210130801 - L1PA14 LINE L1 -1 6160 5770 2321 101 0 0 chr3 17393777 17394073 -210130505 - AluSg SINE Alu -14 296 1 3141 139 29 0 chr3 17394073 17394219 -210130359 - L1PA14 LINE L1 -391 5770 5630 650 188 8 0 chr3 17394219 17394352 -210130226 + L1MB3 LINE L1 5198 5331 -815 549 176 0 0 chr3 17394352 17394437 -210130141 + FRAM SINE Alu 71 155 -21 4609 142 61 7 chr3 17394445 17395263 -210129315 + L1MB3 LINE L1 5320 6181 -2 496 284 60 40 chr3 17395380 17395630 -210128948 - MER112 DNA MER1_type -5 255 1 313 265 68 56 chr3 17395763 17396012 -210128566 - L1M4 LINE L1 -1487 4659 4408 848 162 0 7 chr3 17396044 17396186 -210128392 - FLAM_C SINE Alu -2 141 1 517 287 144 50 chr3 17396228 17396973 -210127605 - L1M4 LINE L1 -1810 4336 3522 308 285 81 49 chr3 17397054 17397300 -210127278 - L1M4 LINE L1 -2745 3401 3148 2169 99 7 14 chr3 17397313 17397607 -210126971 + AluSx SINE Alu 1 292 -20 261 194 24 10 chr3 17397635 17397698 -210126880 + L1MA8 LINE L1 5994 6059 -253 308 304 168 20 chr3 17398013 17398263 -210126315 - HAL1 LINE L1 -1409 1098 812 243 235 49 37 chr3 17398896 17398977 -210125601 - HAL1 LINE L1 -2413 94 13 189 0 0 0 chr3 17399730 17399751 -210124827 + (TTG)n Simple_repeat Simple_repeat 2 22 0 412 294 9 0 chr3 17399873 17399979 -210124599 + Charlie8 DNA MER1_type 92 198 -2219 701 101 74 81 chr3 17399979 17400137 -210124441 + MER63 DNA MER1_type 4 1651 -37 210 309 151 0 chr3 17400342 17400481 -210124097 + L3 LINE CR1 1050 1209 -368 1829 170 0 3 chr3 17401461 17401749 -210122829 + AluJb SINE Alu 1 287 -25 1862 91 4 0 chr3 17401874 17402116 -210122462 - AluSg/x SINE Alu 0 312 70 380 71 18 0 chr3 17402119 17402175 -210122403 + (GGAA)n Simple_repeat Simple_repeat 3 59 0 235 241 126 0 chr3 17402215 17402302 -210122276 - MIR SINE MIR -70 192 95 303 98 0 0 chr3 17402427 17402468 -210122110 + Alu SINE Alu 1 41 -262 2168 122 10 0 chr3 17402468 17402772 -210121806 + AluSx SINE Alu 5 311 -1 2392 97 0 3 chr3 17402778 17403089 -210121489 + AluSg SINE Alu 1 310 0 993 140 27 0 chr3 17403674 17403824 -210120754 + AluJb SINE Alu 137 290 -22 2032 132 28 0 chr3 17404203 17404492 -210120086 - AluSx SINE Alu -15 297 1 563 237 0 6 chr3 17404508 17404681 -210119897 + CT-rich Low_complexity Low_complexity 2 173 0 246 340 19 19 chr3 17404687 17404790 -210119788 - L2 LINE L2 -26 3287 3185 780 293 37 28 chr3 17404896 17405315 -210119263 - L2 LINE L2 -169 3144 2713 2229 126 0 0 chr3 17405315 17405624 -210118954 - AluSx SINE Alu -3 309 1 780 293 37 28 chr3 17405624 17405685 -210118893 - L2 LINE L2 -600 2713 2654 873 127 6 73 chr3 17405690 17405823 -210118755 - LTR34 LTR ERV1 -542 157 35 2469 61 0 10 chr3 17405823 17406120 -210118458 - AluY SINE Alu -17 294 1 873 127 6 73 chr3 17406120 17406151 -210118427 - LTR34 LTR ERV1 -664 35 4 922 204 104 12 chr3 17406184 17406424 -210118154 - MLT1J2 LTR MaLR -123 327 66 397 288 70 41 chr3 17406517 17406760 -210117818 - L2 LINE L2 -830 2484 2235 805 259 50 86 chr3 17406936 17407079 -210117499 - L2 LINE L2 -4 3309 3162 2365 63 3 48 chr3 17407079 17407394 -210117184 + AluY SINE Alu 1 301 -10 805 259 50 86 chr3 17407394 17407406 -210117172 - L2 LINE L2 -151 3162 3151 2014 136 7 0 chr3 17407406 17407692 -210116886 + AluJo SINE Alu 4 291 -21 805 259 50 86 chr3 17407692 17407721 -210116857 - L2 LINE L2 -162 3151 3122 1689 165 0 4 chr3 17407721 17407981 -210116597 + AluJb SINE Alu 45 303 -9 805 259 50 86 chr3 17407981 17408319 -210116259 - L2 LINE L2 -191 3122 2804 263 319 36 7 chr3 17409396 17409534 -210115044 + LTR67 LTR ERVL 410 551 -6 2375 70 3 0 chr3 17409609 17409944 -210114634 - AluSp SINE Alu 0 336 1 495 311 42 42 chr3 17410554 17410747 -210113831 + MIR SINE MIR 13 205 -57 582 220 119 6 chr3 17411060 17411228 -210113350 + MER5A DNA MER1_type 3 189 0 461 191 10 13 chr3 17411654 17411754 -210112824 + MLT1J LTR MaLR 63 199 -265 1184 134 0 0 chr3 17411850 17412022 -210112556 + AluSg/x SINE Alu 135 306 -4 291 276 71 0 chr3 17412201 17412299 -210112279 + L2 LINE L2 3167 3271 -1 185 0 40 0 chr3 17412402 17412427 -210112151 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 696 269 20 0 chr3 17413067 17413268 -210111310 + MIR SINE MIR 1 205 -57 2172 123 7 3 chr3 17413461 17413761 -210110817 + AluSx SINE Alu 1 301 -11 401 192 40 139 chr3 17414134 17414171 -210110407 + L1MC4 LINE L1 7782 7821 -221 2460 84 0 0 chr3 17414171 17414469 -210110109 - AluSg1 SINE Alu -11 298 1 401 192 40 139 chr3 17414469 17414582 -210109996 + L1MC4 LINE L1 7821 7917 -125 524 251 21 122 chr3 17415696 17415854 -210108724 - MER112 DNA MER1_type 0 260 88 1662 159 3 36 chr3 17415854 17416156 -210108422 - AluJo SINE Alu -12 300 9 524 251 21 122 chr3 17416156 17416234 -210108344 - MER112 DNA MER1_type -172 88 55 1784 146 3 24 chr3 17416234 17416528 -210108050 - AluJo SINE Alu -24 288 1 524 251 21 122 chr3 17416528 17416577 -210108001 - MER112 DNA MER1_type -205 55 3 1911 131 3 37 chr3 17417343 17417640 -210106938 + AluSx SINE Alu 6 292 -20 1873 161 3 20 chr3 17418646 17418944 -210105634 + AluJb SINE Alu 1 293 -19 185 250 94 0 chr3 17419724 17419788 -210104790 + L3 LINE CR1 1050 1119 -458 2330 167 60 0 chr3 17420196 17420598 -210103980 + MSTB LTR MaLR 1 426 0 298 243 153 21 chr3 17420722 17420867 -210103711 - MIR SINE MIR -62 146 30 2019 123 0 60 chr3 17421449 17421765 -210102813 + AluSx SINE Alu 1 297 -15 450 150 0 0 chr3 17421798 17421878 -210102700 + FLAM_A SINE Alu 61 140 -2 1042 94 0 0 chr3 17423088 17423216 -210101362 + AluSq/x SINE Alu 6 133 -180 2430 86 0 6 chr3 17423220 17423535 -210101043 + AluSp SINE Alu 1 313 0 252 211 145 13 chr3 17423766 17423842 -210100736 + MER103 DNA DNA 3 88 -78 1903 41 5 0 chr3 17424838 17425059 -210099519 + AluY SINE Alu 77 298 -13 1794 153 3 42 chr3 17426166 17426474 -210098104 + AluJb SINE Alu 12 307 -5 1676 164 3 33 chr3 17426693 17426997 -210097581 + AluJo SINE Alu 5 299 -13 493 200 54 0 chr3 17427178 17427308 -210097270 + MIR SINE MIR 56 192 -70 1901 140 11 7 chr3 17427901 17428187 -210096391 + AluSx SINE Alu 1 287 -25 2274 108 0 3 chr3 17428277 17428582 -210095996 + AluSg SINE Alu 1 304 -6 2546 135 47 0 chr3 17428977 17429384 -210095194 - MSTB LTR MaLR 0 426 1 2277 108 3 0 chr3 17429939 17430235 -210094343 + AluSx SINE Alu 1 297 -15 2139 134 0 10 chr3 17430244 17430379 -210094199 + AluJb SINE Alu 1 136 -176 1929 84 42 90 chr3 17430379 17430689 -210093889 + AluY SINE Alu 1 295 -16 2139 134 0 10 chr3 17430689 17430858 -210093720 + AluJb SINE Alu 136 302 -10 183 297 242 11 chr3 17431704 17431795 -210092783 - MIR SINE MIR -81 127 16 251 28 28 0 chr3 17432676 17432712 -210091866 + (TA)n Simple_repeat Simple_repeat 1 37 0 982 128 0 0 chr3 17433529 17433662 -210090916 + AluSq/x SINE Alu 1 133 -179 186 156 0 0 chr3 17433664 17433709 -210090869 + A-rich Low_complexity Low_complexity 1 45 0 2573 47 7 0 chr3 17433974 17434271 -210090307 + AluY SINE Alu 1 299 -12 2352 97 3 0 chr3 17434452 17434751 -210089827 - AluSx SINE Alu -12 300 1 3437 211 9 8 chr3 17434754 17435139 -210089439 + MER82 DNA MER2_type 8 396 -257 2478 81 7 0 chr3 17435139 17435447 -210089131 + AluSq SINE Alu 1 310 -3 3437 211 9 8 chr3 17435447 17435705 -210088873 + MER82 DNA MER2_type 396 652 -1 546 187 0 9 chr3 17436195 17436302 -210088276 - MER82 DNA MER2_type -170 483 378 712 120 14 78 chr3 17436608 17436758 -210087820 - FLAM_C SINE Alu 0 141 1 265 272 88 44 chr3 17436955 17437091 -210087487 - MIR SINE MIR -89 173 32 182 298 67 52 chr3 17437419 17437577 -210087001 - MIR SINE MIR -54 154 20 316 296 130 0 chr3 17441043 17441158 -210083420 + MIR SINE MIR 21 150 -112 264 278 93 25 chr3 17441736 17441898 -210082680 + L1MB8 LINE L1 5769 5941 -237 1271 127 5 39 chr3 17441956 17442016 -210082562 + AluSg/x SINE Alu 79 140 -172 2162 105 21 0 chr3 17442016 17442301 -210082277 + AluSg SINE Alu 1 291 -19 1271 127 5 39 chr3 17442301 17442445 -210082133 + AluSg/x SINE Alu 140 276 -36 245 29 0 29 chr3 17442446 17442481 -210082097 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 2057 153 0 3 chr3 17442625 17442938 -210081640 + AluJo SINE Alu 1 312 0 295 230 46 0 chr3 17443165 17443252 -210081326 + L1MC5 LINE L1 7771 7861 -100 225 0 0 0 chr3 17443347 17443372 -210081206 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 2316 104 10 0 chr3 17443382 17443689 -210080889 - AluSx SINE Alu -2 310 1 2142 112 0 60 chr3 17443691 17444022 -210080556 - AluSx SINE Alu -1 311 1 290 220 68 96 chr3 17444353 17444530 -210080048 + MER5A DNA MER1_type 18 189 0 395 284 157 0 chr3 17444661 17444795 -210079783 - MIR SINE MIR -95 167 13 346 299 39 95 chr3 17444912 17445250 -210079328 - L2 LINE L2 -5 3267 2949 542 110 12 0 chr3 17445464 17445546 -210079032 + MSTA LTR MaLR 1 83 -345 296 345 123 6 chr3 17445854 17446025 -210078553 - MIR SINE MIR -19 243 53 312 333 37 7 chr3 17446265 17446400 -210078178 + MIR SINE MIR 50 188 -74 300 321 138 12 chr3 17447585 17447816 -210076762 + L2 LINE L2 2560 2820 -494 342 232 135 27 chr3 17447816 17447976 -210076602 + MIR SINE MIR 2 186 -22 230 122 41 0 chr3 17449209 17449258 -210075320 + (TTTG)n Simple_repeat Simple_repeat 4 54 0 788 153 0 22 chr3 17449961 17450098 -210074480 + AluJo SINE Alu 1 134 -178 2215 99 3 3 chr3 17450440 17450744 -210073834 - AluSx SINE Alu -8 304 1 4805 170 53 59 chr3 17450832 17451975 -210072603 - L1MB4 LINE L1 -8 6172 5023 2470 83 0 0 chr3 17451975 17452277 -210072301 + AluY SINE Alu 1 302 -9 4805 170 53 59 chr3 17452277 17453013 -210071565 - L1MB4 LINE L1 -1157 5023 4314 1622 146 97 0 chr3 17453013 17453322 -210071256 - MER44D DNA MER2_type 0 609 1 4805 170 53 59 chr3 17453322 17453363 -210071215 - L1MB4 LINE L1 -1866 4314 4274 1285 193 30 4 chr3 17453362 17453632 -210070946 - L1M4 LINE L1 -645 5608 5332 * 2132 145 0 0 chr3 17453686 17453989 -210070589 + AluSx SINE Alu 1 303 -9 2074 120 0 34 chr3 17454000 17454324 -210070254 + AluSp SINE Alu 1 313 0 870 237 58 19 chr3 17454384 17454696 -210069882 - L1M4 LINE L1 -4109 2287 1964 2361 57 29 0 chr3 17454764 17455044 -210069534 + AluY SINE Alu 1 288 -23 2401 232 54 23 chr3 17455045 17455773 -210068805 + L1M4c LINE L1 776 1525 -4859 1688 159 31 70 chr3 17455773 17456157 -210068421 + L1ME2 LINE L1 5791 6159 -5 239 288 124 7 chr3 17456262 17456415 -210068163 + MIR SINE MIR 79 249 -13 790 148 7 22 chr3 17456524 17456659 -210067919 - FLAM_C SINE Alu 0 133 1 311 278 130 68 chr3 17456765 17456927 -210067651 + MER5B DNA MER1_type 1 172 -6 207 0 0 0 chr3 17457197 17457220 -210067358 + (CA)n Simple_repeat Simple_repeat 2 24 0 1887 230 8 44 chr3 17457274 17457748 -210066830 - MLT2B1 LTR ERVL -63 457 1 962 239 16 3 chr3 17458573 17458834 -210065744 + L1M4 LINE L1 4776 5039 -1107 1775 150 34 17 chr3 17458859 17459153 -210065425 + AluJb SINE Alu 1 299 -13 911 286 40 19 chr3 17459153 17459468 -210065110 + L1MA9 LINE L1 5958 6282 -30 880 238 46 19 chr3 17459475 17459798 -210064780 + L1M4 LINE L1 4272 4603 -1543 1067 247 103 47 chr3 17459815 17460321 -210064257 + L1M4 LINE L1 4673 5206 -940 954 309 98 48 chr3 17460296 17460611 -210063967 + L1M4 LINE L1 4149 4447 -1699 * 801 163 0 0 chr3 17460611 17460734 -210063844 + FLAM_A SINE Alu 1 123 -10 954 309 98 48 chr3 17460734 17461242 -210063336 + L1M4 LINE L1 4447 5013 -1133 243 310 110 25 chr3 17461391 17461672 -210062906 + L1M4 LINE L1 3967 4271 -1875 2142 107 0 4 chr3 17461780 17462060 -210062518 + AluSg SINE Alu 1 279 -31 2007 118 51 0 chr3 17462092 17462388 -210062190 + AluSx SINE Alu 1 311 -1 777 193 91 42 chr3 17462478 17462743 -210061835 - L2 LINE L2 -5 3308 3031 311 304 59 20 chr3 17462783 17463051 -210061527 + L1M4 LINE L1 4554 4833 -1313 288 267 114 88 chr3 17463144 17463656 -210060922 - L1M4 LINE L1 -1936 4210 3686 1317 219 58 20 chr3 17463703 17463829 -210060749 + Charlie1b DNA MER1_type 10 130 -2631 2089 138 7 0 chr3 17463829 17464126 -210060452 + AluSx SINE Alu 1 299 -13 1317 219 58 20 chr3 17464126 17464424 -210060154 + Charlie1b DNA MER1_type 130 501 -22 237 258 32 0 chr3 17465055 17465117 -210059461 + L3 LINE CR1 1512 1575 -2 4943 124 8 0 chr3 17466256 17466979 -210057599 - L1PA16 LINE L1 -9 6157 5429 2359 90 7 0 chr3 17467122 17467421 -210057157 - AluSx SINE Alu -11 301 1 2156 106 0 0 chr3 17468121 17468405 -210056173 + AluSc SINE Alu 18 301 -8 788 153 0 22 chr3 17468747 17468884 -210055694 - AluJo SINE Alu -178 134 1 193 118 39 0 chr3 17469585 17469636 -210054942 + (CAAA)n Simple_repeat Simple_repeat 2 54 0 342 232 135 27 chr3 17470869 17471029 -210053549 - MIR SINE MIR -22 186 2 300 321 138 12 chr3 17471029 17471260 -210053318 - L2 LINE L2 -494 2820 2560 477 307 56 28 chr3 17472390 17472641 -210051937 + MARNA DNA Mariner 22 279 -307 307 215 208 54 chr3 17472805 17472954 -210051624 + MARNA DNA Mariner 373 544 -42 514 286 76 5 chr3 17473353 17473538 -210051040 - MIR SINE MIR -64 198 1 705 288 121 21 chr3 17473996 17474336 -210050242 - L1MC4a LINE L1 -361 5809 5454 792 271 45 20 chr3 17475273 17475517 -210049061 + MIR SINE MIR 3 252 -10 1782 204 50 72 chr3 17475649 17476203 -210048375 + MER34 LTR ERV1 1 542 0 240 266 0 48 chr3 17477018 17477142 -210047436 + (CA)n Simple_repeat Simple_repeat 2 119 0 236 247 136 52 chr3 17478580 17478734 -210045844 + MIR3 SINE MIR 42 208 0 2001 93 34 0 chr3 17478790 17479088 -210045490 - AluSg SINE Alu 0 308 2 207 0 0 0 chr3 17480825 17480848 -210043730 + (CA)n Simple_repeat Simple_repeat 2 24 0 225 94 0 0 chr3 17481130 17481162 -210043416 + (GGA)n Simple_repeat Simple_repeat 2 33 0 204 259 0 35 chr3 17481690 17481748 -210042830 + MIR SINE MIR 86 141 -67 218 301 54 11 chr3 17486984 17487077 -210037501 - MIR SINE MIR -6 256 160 512 272 163 32 chr3 17487432 17487678 -210036900 + L3 LINE CR1 1298 1575 -2 1867 136 11 0 chr3 17488371 17488657 -210035921 + AluJb SINE Alu 1 289 -23 389 323 106 22 chr3 17488702 17488928 -210035650 + L3 LINE CR1 923 1167 -410 275 169 65 52 chr3 17488943 17489020 -210035558 + MIR SINE MIR 84 161 -101 357 314 146 11 chr3 17489022 17489207 -210035371 + L3 LINE CR1 1361 1570 -7 222 37 0 0 chr3 17489219 17489246 -210035332 + (T)n Simple_repeat Simple_repeat 1 27 0 298 256 107 74 chr3 17489665 17489786 -210034792 + MIR SINE MIR 24 148 -114 1173 98 186 0 chr3 17491192 17491386 -210033192 + MER30 DNA MER1_type 1 230 0 786 303 174 31 chr3 17491572 17492090 -210032488 - L3 LINE CR1 -4 1573 982 625 195 134 12 chr3 17493424 17493588 -210030990 - MER97a DNA MER1_type? -710 184 1 595 302 201 17 chr3 17493591 17493837 -210030741 - L2 LINE L2 -18 3295 3095 2129 84 7 3 chr3 17493837 17494123 -210030455 + AluSc SINE Alu 1 287 -22 595 302 201 17 chr3 17494123 17494220 -210030358 - L2 LINE L2 -218 3095 2889 1384 274 159 21 chr3 17494252 17494697 -210029881 - L2 LINE L2 -899 2415 1862 2052 105 21 0 chr3 17494697 17494982 -210029596 - AluSg SINE Alu -19 291 1 1384 274 159 21 chr3 17494982 17495145 -210029433 - L2 LINE L2 -1452 1862 1723 191 200 432 11 chr3 17495159 17495254 -210029324 - L2 LINE L2 -1737 1577 1443 1246 277 51 31 chr3 17495762 17496254 -210028324 + MER77 LTR ERV1 52 599 -6 742 216 47 0 chr3 17496345 17496493 -210028085 - MIR3 SINE MIR -21 187 33 457 315 14 14 chr3 17496854 17496997 -210027581 - MIR3 SINE MIR -53 155 13 362 254 16 22 chr3 17497644 17497795 -210026783 - MIR SINE MIR -76 132 3 293 313 35 26 chr3 17497844 17497959 -210026619 - MIR SINE MIR -63 145 30 239 247 14 55 chr3 17499415 17499488 -210025090 - MIR3 SINE MIR -37 171 102 447 281 68 14 chr3 17499739 17499885 -210024693 + MIR3 SINE MIR 18 171 -37 2468 163 5 0 chr3 17500543 17500948 -210023630 - MSTB1-int LTR MaLR -1230 421 15 1048 110 7 13 chr3 17500951 17501105 -210023473 - MSTB1 LTR MaLR -4 428 276 284 250 12 50 chr3 17501945 17502025 -210022553 + MIR SINE MIR 69 145 -117 284 310 70 0 chr3 17502118 17502218 -210022360 + MIR SINE MIR 34 140 -68 289 385 37 0 chr3 17502615 17502724 -210021854 - MIR SINE MIR -61 147 35 180 294 206 29 chr3 17502864 17502966 -210021612 + L2 LINE L2 3128 3247 -25 2178 92 7 3 chr3 17503337 17503641 -210020937 + AluSc SINE Alu 5 309 0 1767 143 42 0 chr3 17504536 17504822 -210019756 - AluJb SINE Alu -14 298 1 248 338 40 71 chr3 17504972 17505170 -210019408 - L2 LINE L2 -16 3256 3065 2412 62 0 7 chr3 17505350 17505658 -210018920 - AluY SINE Alu -5 306 1 1176 234 87 36 chr3 17505907 17506322 -210018256 - Charlie4a DNA MER1_type -34 474 39 477 202 65 16 chr3 17507157 17507281 -210017297 - MIR3 SINE MIR -28 180 51 525 257 99 20 chr3 17507841 17507993 -210016585 + MIR3 SINE MIR 15 178 -30 418 239 172 8 chr3 17508276 17508410 -210016168 - MIR3 SINE MIR -23 185 30 2246 109 0 0 chr3 17508544 17508856 -210015722 - AluSx SINE Alu 0 312 1 203 235 12 35 chr3 17509286 17509371 -210015207 + (TCTCTG)n Simple_repeat Simple_repeat 2 84 0 580 318 74 29 chr3 17510348 17510659 -210013919 + L2 LINE L2 2945 3269 -3 342 339 136 39 chr3 17511939 17512196 -210012382 - L3 LINE CR1 -9 1568 1287 190 283 170 9 chr3 17512491 17512597 -210011981 - L2 LINE L2 0 3272 3150 289 277 18 54 chr3 17512785 17512897 -210011681 - L2 LINE L2 -21 3251 3144 293 348 79 77 chr3 17513017 17513460 -210011118 + L2 LINE L2 2827 3270 -2 364 0 0 0 chr3 17513545 17513586 -210010992 + 5S rRNA rRNA 2 42 -79 336 341 190 19 chr3 17513717 17513928 -210010650 - MIR SINE MIR -13 249 3 204 266 94 78 chr3 17514344 17514472 -210010106 - L2 LINE L2 -1 3312 3183 367 290 160 20 chr3 17514509 17514709 -210009869 - MIR SINE MIR -4 258 31 232 301 173 30 chr3 17515643 17515776 -210008802 - L3 LINE CR1 -1 1576 1425 260 282 0 59 chr3 17517438 17517523 -210007055 - L2 LINE L2 -3 3310 3231 294 298 116 7 chr3 17517614 17517761 -210006817 - MIR SINE MIR -64 144 21 492 253 81 46 chr3 17518062 17518236 -210006342 - MIR3 SINE MIR -14 194 15 476 265 27 34 chr3 17518553 17518700 -210005878 + MIR3 SINE MIR 15 160 -48 307 306 45 32 chr3 17518953 17519110 -210005468 - MIR3 SINE MIR -14 194 36 2187 87 3 7 chr3 17520487 17520785 -210003793 - AluY SINE Alu -14 297 1 324 176 0 0 chr3 17520847 17520898 -210003680 - MIR SINE MIR -99 163 113 318 50 0 0 chr3 17521388 17521428 -210003150 + (CA)n Simple_repeat Simple_repeat 2 41 0 409 201 153 35 chr3 17522008 17522152 -210002426 + MIR SINE MIR 77 237 -25 254 186 0 0 chr3 17523026 17523069 -210001509 - MIR3 SINE MIR -30 178 136 1485 200 7 0 chr3 17523077 17523362 -210001216 - AluJo SINE Alu -25 287 1 735 194 0 0 chr3 17523362 17523486 -210001092 - AluJo SINE Alu -177 135 12 1932 128 3 32 chr3 17523565 17523878 -210000700 - AluSx SINE Alu -8 304 1 3652 152 9 9 chr3 17524700 17525331 -209999247 + L1PB4 LINE L1 5526 6156 0 214 368 63 0 chr3 17525956 17526051 -209998527 + MIR SINE MIR 156 256 -6 495 280 17 43 chr3 17526808 17527032 -209997546 - MIR SINE MIR -41 221 4 348 284 25 81 chr3 17527080 17527277 -209997301 + MIR SINE MIR 19 204 -58 394 333 57 8 chr3 17528050 17528173 -209996405 + MIR SINE MIR 16 144 -64 433 292 102 42 chr3 17528942 17529178 -209995400 - MIR SINE MIR 0 262 13 206 211 0 179 chr3 17529687 17529782 -209994796 + MIR3 SINE MIR 102 179 -29 270 295 86 23 chr3 17529906 17530093 -209994485 - MIR SINE MIR -22 240 49 287 322 44 0 chr3 17530584 17530674 -209993904 + MIR SINE MIR 21 114 -148 420 292 98 81 chr3 17530871 17531268 -209993310 - L1MC4a LINE L1 -1884 5924 5521 1863 151 0 7 chr3 17531351 17531649 -209992929 - AluJo SINE Alu -12 300 5 446 302 32 16 chr3 17532103 17532229 -209992349 + MIR SINE MIR 19 146 -62 304 266 0 0 chr3 17532245 17532309 -209992269 - MIR SINE MIR -16 246 183 298 282 95 95 chr3 17533921 17534173 -209990405 - L2 LINE L2 -111 3161 2910 500 253 40 118 chr3 17534300 17534494 -209990084 - L1MC5 LINE L1 -86 7875 7710 1059 170 60 13 chr3 17534494 17534729 -209989849 - L1MB4 LINE L1 -3 6177 5932 500 253 40 118 chr3 17534729 17534830 -209989748 - L1MC5 LINE L1 -251 7710 7603 223 312 78 57 chr3 17534834 17534975 -209989603 - L2 LINE L2 -560 2754 2611 311 299 57 32 chr3 17536147 17536296 -209988282 - MIR SINE MIR -67 141 40 802 181 0 0 chr3 17536446 17536636 -209987942 + FLAM_A SINE Alu 1 190 0 765 273 0 44 chr3 17537393 17537576 -209987002 - MER91A DNA MER1_type -21 175 1 2087 215 68 0 chr3 17537927 17538351 -209986227 + MLT2B1 LTR ERVL 1 453 -67 241 275 0 15 chr3 17538351 17538482 -209986096 + (CA)n Simple_repeat Simple_repeat 1 129 0 2065 132 46 9 chr3 17538482 17538830 -209985748 - MLT1A2 LTR MaLR -13 361 1 473 275 163 6 chr3 17539119 17539279 -209985299 + MIR SINE MIR 7 191 -71 303 174 0 71 chr3 17539485 17539583 -209984995 + T-rich Low_complexity Low_complexity 3 93 0 405 224 58 83 chr3 17539586 17539742 -209984836 + L2 LINE L2 3162 3313 0 274 255 117 21 chr3 17540086 17540180 -209984398 - MIR3 SINE MIR -38 170 68 1927 144 7 3 chr3 17540369 17540660 -209983918 + AluJb SINE Alu 1 292 -20 218 277 229 0 chr3 17541149 17541232 -209983346 - MIR3 SINE MIR -29 179 78 810 228 101 13 chr3 17541785 17542022 -209982556 - MIR SINE MIR 0 262 5 513 328 155 45 chr3 17542635 17543099 -209981479 - L3 LINE CR1 -28 1549 1035 2139 88 50 3 chr3 17543313 17543596 -209980982 + AluSg SINE Alu 1 296 -14 227 261 127 22 chr3 17544005 17544139 -209980439 - L1MB4 LINE L1 -363 5799 5652 608 215 54 8 chr3 17544535 17544584 -209979994 - AluJo SINE Alu -175 137 92 1951 131 7 7 chr3 17544584 17544866 -209979712 - AluJb SINE Alu -12 300 19 608 215 54 8 chr3 17544866 17544946 -209979632 - AluJo SINE Alu -220 92 2 727 244 0 0 chr3 17544994 17545125 -209979453 - FLAM_A SINE Alu -11 131 1 893 238 113 51 chr3 17545125 17545776 -209978802 - L1MEd LINE L1 -880 1610 815 1009 298 148 20 chr3 17545824 17546311 -209978267 - L1MEd LINE L1 -5497 622 74 2238 178 75 5 chr3 17546442 17546857 -209977721 + MLT2C2 LTR ERVL 1 444 -20 583 158 26 20 chr3 17546858 17547010 -209977568 + CT-rich Low_complexity Low_complexity 3 155 0 239 157 118 0 chr3 17547013 17547064 -209977514 + MLT2C1 LTR ERVL 341 397 0 186 185 185 37 chr3 17547133 17547187 -209977391 - L2 LINE L2 -94 3219 3158 554 340 93 42 chr3 17547229 17547585 -209976993 - L2 LINE L2 0 3272 2899 281 295 21 21 chr3 17547672 17547767 -209976811 - L2 LINE L2 -212 3060 2966 571 259 30 0 chr3 17548335 17548470 -209976108 + MIR3 SINE MIR 21 159 -49 187 316 35 0 chr3 17548638 17548695 -209975883 + MIR3 SINE MIR 150 208 0 345 371 57 7 chr3 17549131 17549271 -209975307 - L2 LINE L2 -1 3271 3125 1051 187 123 43 chr3 17549556 17549856 -209974722 + MER33 DNA MER1_type 1 324 0 276 208 50 0 chr3 17550106 17550188 -209974390 + MIR SINE MIR 88 143 -65 832 149 8 0 chr3 17550210 17550331 -209974247 - FLAM_C SINE Alu -21 122 1 365 266 56 49 chr3 17550350 17550493 -209974085 - MIR SINE MIR -40 222 79 187 294 0 0 chr3 17551203 17551254 -209973324 + L2 LINE L2 3174 3224 -48 1720 192 3 7 chr3 17551562 17551870 -209972708 + AluJo SINE Alu 1 307 -5 276 300 60 30 chr3 17552679 17552779 -209971799 - L2 LINE L2 -19 3253 3151 270 222 30 121 chr3 17552774 17552873 -209971705 - L2 LINE L2 -8 3264 3175 * 241 340 14 0 chr3 17553371 17553456 -209971122 + MIR SINE MIR 36 121 -87 4515 167 53 22 chr3 17554001 17555167 -209969411 + L1MB5 LINE L1 4969 6168 -6 213 363 20 20 chr3 17555609 17555711 -209968867 + L2 LINE L2 2986 3087 -185 261 317 55 56 chr3 17555833 17556045 -209968533 + MIR SINE MIR 4 223 -39 21 0 0 0 chr3 17556271 17556292 -209968286 + AT_rich Low_complexity Low_complexity 1 21 0 2434 107 67 12 chr3 17557213 17557558 -209967020 - THE1B LTR MaLR 0 364 1 2427 68 6 19 chr3 17557558 17557882 -209966696 - THE1B-int LTR MaLR 0 1580 1261 * 3028 120 263 2 chr3 17557851 17558392 -209966186 + THE1-int LTR MaLR 591 1272 -308 1795 166 10 3 chr3 17558414 17558703 -209965875 - AluJo SINE Alu -19 293 3 236 288 115 58 chr3 17558705 17558844 -209965734 - MIR SINE MIR -114 148 2 203 171 49 0 chr3 17559023 17559064 -209965514 - MIR SINE MIR -6 256 214 392 275 174 12 chr3 17559232 17559399 -209965179 - MIR SINE MIR -60 202 9 233 250 98 45 chr3 17560219 17560331 -209964247 + MIR SINE MIR 20 137 -71 1801 155 72 0 chr3 17560392 17560683 -209963895 - AluJb SINE Alu 0 312 1 807 167 0 0 chr3 17560872 17560986 -209963592 - FLAM_C SINE Alu -25 118 5 225 65 0 0 chr3 17561575 17561606 -209962972 + (CA)n Simple_repeat Simple_repeat 2 32 0 186 202 11 146 chr3 17562055 17562144 -209962434 - L2 LINE L2 -16 3297 3221 2179 178 121 20 chr3 17562144 17562701 -209961877 + MLT1E2 LTR MaLR 1 624 0 1873 152 0 0 chr3 17563254 17563530 -209961048 - AluJb SINE Alu -36 276 1 1185 128 6 0 chr3 17563629 17563824 -209960754 - AluY SINE Alu 0 307 112 1303 145 0 0 chr3 17563840 17564033 -209960545 - AluSx SINE Alu -119 193 1 547 209 80 70 chr3 17564226 17564266 -209960312 - MIR SINE MIR -60 202 164 2417 96 0 0 chr3 17564266 17564569 -209960009 - AluSx SINE Alu -9 303 1 547 209 80 70 chr3 17564569 17564715 -209959863 - MIR SINE MIR -98 164 14 2514 59 10 0 chr3 17565244 17565551 -209959027 - AluY SINE Alu -1 310 1 1836 151 0 18 chr3 17565680 17565965 -209958613 - AluJo SINE Alu -32 280 1 2271 113 0 0 chr3 17566446 17566746 -209957832 - AluSx SINE Alu -12 300 1 182 277 123 0 chr3 17567347 17567412 -209957166 - L2 LINE L2 -14 3258 3186 1543 129 179 150 chr3 17567421 17567912 -209956666 - LTR12 LTR ERV1 -133 1523 100 289 211 0 0 chr3 17567912 17567964 -209956614 - LTR30 LTR ERV1 -670 52 1 1979 128 0 52 chr3 17567980 17568308 -209956270 - AluJo SINE Alu -1 311 1 1697 146 10 31 chr3 17568498 17568792 -209955786 + AluJb SINE Alu 1 288 -24 2178 98 0 44 chr3 17568796 17569111 -209955467 + AluY SINE Alu 1 301 -10 1626 183 30 17 chr3 17569724 17570024 -209954554 - AluJo SINE Alu -8 304 1 2084 101 52 3 chr3 17570065 17570352 -209954226 - AluSx SINE Alu -11 301 1 291 247 276 6 chr3 17571351 17571521 -209953057 + MIR SINE MIR 39 254 -8 562 315 28 5 chr3 17571730 17571937 -209952641 - MIR SINE MIR -12 250 38 2497 81 3 0 chr3 17571937 17572246 -209952332 + AluSp SINE Alu 1 310 -3 584 225 81 17 chr3 17572333 17572506 -209952072 - MIR SINE MIR 0 262 79 348 348 66 57 chr3 17573153 17573590 -209950988 - L2 LINE L2 -2 3270 2830 2302 88 3 0 chr3 17573693 17574006 -209950572 - AluSx SINE Alu 0 314 1 2131 123 7 7 chr3 17574017 17574325 -209950253 - AluSg SINE Alu -2 308 1 196 203 0 149 chr3 17574651 17574725 -209949853 - L2 LINE L2 -1 3271 3209 2314 103 0 0 chr3 17575048 17575365 -209949213 + AluSq SINE Alu 1 317 0 180 308 58 0 chr3 17576394 17576446 -209948132 - L2 LINE L2 0 3272 3218 2064 108 36 16 chr3 17576962 17577268 -209947310 + AluSx SINE Alu 1 312 0 492 277 50 21 chr3 17577274 17577516 -209947062 - L1M4 LINE L1 -3435 3209 2961 810 179 33 20 chr3 17577558 17577709 -209946869 + FRAM SINE Alu 20 172 -4 263 261 133 9 chr3 17577738 17577964 -209946614 - L1M4 LINE L1 -3763 2881 2628 216 304 0 0 chr3 17578206 17578262 -209946316 - MER5A DNA MER1_type -6 183 128 981 239 26 4 chr3 17578664 17578890 -209945688 + MIR SINE MIR 32 262 0 257 291 13 0 chr3 17578893 17578984 -209945594 - L1M4 LINE L1 -915 2090 1960 341 169 26 39 chr3 17578994 17579071 -209945507 - MLT1I LTR MaLR 0 409 334 4579 182 55 27 chr3 17580213 17581867 -209942711 - L1MB7 LINE L1 -19 6401 4686 2616 52 0 3 chr3 17581872 17582179 -209942399 - AluY SINE Alu -5 306 1 3930 218 59 17 chr3 17582181 17582980 -209941598 - L1MB7 LINE L1 -3022 3360 2483 225 0 0 0 chr3 17582980 17583005 -209941573 + (TA)n Simple_repeat Simple_repeat 1 25 0 3930 218 59 17 chr3 17583005 17583505 -209941073 - L1MB7 LINE L1 -3899 2483 2006 2430 192 69 17 chr3 17583503 17583842 -209940736 - L1M4 LINE L1 -4677 1969 1649 * 5489 41 0 44 chr3 17583842 17584228 -209940350 - L1PA5 LINE L1 0 6154 5809 2458 87 0 0 chr3 17584228 17584537 -209940041 - AluY SINE Alu -2 309 1 5489 41 0 44 chr3 17584537 17584828 -209939750 - L1PA5 LINE L1 -345 5809 5507 2430 192 69 17 chr3 17584828 17585272 -209939306 - L1M4 LINE L1 -4997 1649 1172 1146 284 155 51 chr3 17585571 17586288 -209938290 - L2 LINE L2 -597 2717 1895 2185 103 0 16 chr3 17586288 17586600 -209937978 - AluY SINE Alu -4 307 1 1146 284 155 51 chr3 17586600 17586739 -209937839 - L2 LINE L2 -1419 1895 1772 514 293 224 33 chr3 17586722 17587146 -209937432 + L2 LINE L2 2034 2538 -776 * 391 270 81 64 chr3 17587160 17587390 -209937188 - MIR SINE MIR -29 233 5 277 310 77 13 chr3 17587363 17587518 -209937060 + MIR SINE MIR 89 253 -9 * 209 217 0 109 chr3 17587583 17587675 -209936903 - L2 LINE L2 -79 3234 3153 2207 112 10 3 chr3 17587708 17588003 -209936575 + AluSx SINE Alu 1 297 -15 358 291 64 0 chr3 17588725 17588835 -209935743 - MIR3 SINE MIR -5 203 87 224 281 64 94 chr3 17589077 17589248 -209935330 - L2 LINE L2 -6 3266 3101 183 308 168 43 chr3 17589305 17589513 -209935065 + L2 LINE L2 2953 3186 -86 319 292 22 22 chr3 17590257 17590346 -209934232 + MIR SINE MIR 38 126 -82 469 308 0 27 chr3 17591286 17591432 -209933146 - MIR3 SINE MIR -51 157 16 233 356 85 27 chr3 17591834 17592022 -209932556 - MIR3 SINE MIR -1 207 9 21 36 0 0 chr3 17592200 17592228 -209932350 + AT_rich Low_complexity Low_complexity 1 28 0 604 226 0 0 chr3 17592228 17592334 -209932244 - FLAM_A SINE Alu -36 106 1 10308 208 64 36 chr3 17592334 17592372 -209932206 - L1MA7 LINE L1 0 7710 7675 2604 79 37 8 chr3 17592372 17592725 -209931853 + THE1B LTR MaLR 1 363 -1 10308 208 64 36 chr3 17592725 17594103 -209930475 - L1MA7 LINE L1 -35 7675 6336 1259 164 23 18 chr3 17594103 17594322 -209930256 - AluJb SINE Alu -23 289 70 10308 208 64 36 chr3 17594322 17596466 -209928112 - L1MA7 LINE L1 -1374 6336 3787 312 91 0 0 chr3 17596466 17596510 -209928068 + (TG)n Simple_repeat Simple_repeat 2 45 0 10308 208 64 36 chr3 17596510 17597452 -209927126 - L1MA7 LINE L1 -3923 3787 2872 21 36 0 0 chr3 17597497 17597525 -209927053 + AT_rich Low_complexity Low_complexity 1 28 0 450 327 70 55 chr3 17597601 17597858 -209926720 + L3 LINE CR1 1259 1519 -58 259 314 58 73 chr3 17598521 17598551 -209926027 + L3 LINE CR1 1303 1332 -245 2191 128 0 0 chr3 17598551 17598855 -209925723 + AluSx SINE Alu 1 304 -8 259 314 58 73 chr3 17598855 17598961 -209925617 + L3 LINE CR1 1332 1437 -140 295 299 57 93 chr3 17599205 17599331 -209925247 - L3 LINE CR1 -86 1491 1373 3003 173 45 2 chr3 17599331 17599868 -209924710 + MER68 LTR ERV1 3 562 0 295 299 57 93 chr3 17599868 17599935 -209924643 - L3 LINE CR1 -204 1373 1305 16923 134 12 0 chr3 17600969 17604543 -209920035 + L1PA10 LINE L1 2557 6159 -9 551 261 149 5 chr3 17605089 17605277 -209919301 + MIR SINE MIR 47 261 -1 1098 233 4 45 chr3 17605697 17605963 -209918615 + MIR SINE MIR 2 256 -6 325 315 57 12 chr3 17606609 17606778 -209917800 + MIR SINE MIR 17 197 -65 952 284 107 21 chr3 17607521 17608182 -209916396 + L1MB8 LINE L1 2113 2830 -3316 2095 277 119 36 chr3 17608201 17609207 -209915371 + HAL1 LINE L1 3 1092 -1415 * 2375 211 33 7 chr3 17609190 17609759 -209914819 + L1MB8 LINE L1 4807 5390 -756 3625 164 18 45 chr3 17611711 17611766 -209912812 + L1MB8 LINE L1 5390 5445 -733 1733 178 26 13 chr3 17611766 17612070 -209912508 + AluJo SINE Alu 4 311 -1 3625 164 18 45 chr3 17612070 17612316 -209912262 + L1MB8 LINE L1 5445 5696 -482 2295 83 0 20 chr3 17612316 17612617 -209911961 + AluSg SINE Alu 1 295 -15 3625 164 18 45 chr3 17612617 17613076 -209911502 + L1MB8 LINE L1 5696 6131 -47 1854 226 43 25 chr3 17613106 17613664 -209910914 + HAL1 LINE L1 1087 1654 -853 237 65 0 0 chr3 17613774 17613805 -209910773 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 1663 178 11 7 chr3 17613805 17614086 -209910492 - AluJb SINE Alu -30 282 1 24 0 0 0 chr3 17614093 17614117 -209910461 + AT_rich Low_complexity Low_complexity 1 24 0 200 309 12 37 chr3 17614236 17614317 -209910261 - L2 LINE L2 -1605 1709 1631 1730 131 71 41 chr3 17614698 17615117 -209909461 + THE1C LTR MaLR 1 428 0 4627 168 47 33 chr3 17615520 17615997 -209908581 - L1MB7 LINE L1 -15 6169 5700 4855 109 16 15 chr3 17615997 17616748 -209907830 - L1PA16 LINE L1 -9 6157 5406 4627 168 47 33 chr3 17616748 17617496 -209907082 - L1MB7 LINE L1 -484 5700 5112 2268 139 179 101 chr3 17617506 17617900 -209906678 - L1MC3 LINE L1 -194 8009 7647 232 219 0 31 chr3 17617900 17617964 -209906614 - MLT1H LTR MaLR -401 148 87 2268 139 179 101 chr3 17617964 17618187 -209906391 - L1MC3 LINE L1 -556 7647 7276 * 5790 147 37 6 chr3 17618178 17619199 -209905379 - L1MC3 LINE L1 -1160 7043 5991 4972 219 55 15 chr3 17619203 17620544 -209904034 - L1MC3 LINE L1 -849 5715 4321 4784 213 49 16 chr3 17620565 17621956 -209902622 - L1MC3 LINE L1 -4850 1195 1 5091 125 8 26 chr3 17622019 17622817 -209901761 + LTR39 LTR ERV1 1 783 0 252 238 59 50 chr3 17623839 17623940 -209900638 - MER5A DNA MER1_type -80 109 8 303 49 0 0 chr3 17624535 17624576 -209900002 + (CA)n Simple_repeat Simple_repeat 2 42 0 2152 98 0 4 chr3 17624576 17624851 -209899727 - AluSx SINE Alu -38 274 1 342 222 39 78 chr3 17625458 17625611 -209898967 - L1ME3 LINE L1 -55 6107 5961 800 229 132 49 chr3 17625705 17626054 -209898524 - L1MC5 LINE L1 -436 7525 7148 638 293 29 10 chr3 17626053 17626360 -209898218 + L1M4 LINE L1 4311 4623 -1523 * 460 256 141 34 chr3 17626410 17626887 -209897691 - L1M4 LINE L1 -3053 3093 2566 910 294 91 23 chr3 17626887 17627272 -209897306 + HAL1 LINE L1 1498 1908 -599 302 240 53 53 chr3 17627777 17627927 -209896651 + LTR16C LTR ERVL 327 476 -15 24 0 0 0 chr3 17628006 17628030 -209896548 + AT_rich Low_complexity Low_complexity 1 24 0 206 108 54 0 chr3 17628044 17628081 -209896497 + (TTTAA)n Simple_repeat Simple_repeat 4 42 0 348 270 70 43 chr3 17628156 17628341 -209896237 + HAL1 LINE L1 2027 2216 -291 216 0 0 0 chr3 17628409 17628433 -209896145 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2310 87 0 0 chr3 17628436 17628722 -209895856 - AluSg SINE Alu -24 286 1 418 265 62 39 chr3 17628728 17628884 -209895694 + MIR SINE MIR 47 204 -58 339 236 136 43 chr3 17629590 17629730 -209894848 + MIR SINE MIR 100 252 -10 288 209 30 15 chr3 17630260 17630327 -209894251 + MIR3 SINE MIR 137 204 -4 2729 25 0 16 chr3 17630819 17631142 -209893436 + AluYb8 SINE Alu 1 318 0 2158 129 0 0 chr3 17631212 17631514 -209893064 + AluSg SINE Alu 1 302 -8 1816 86 0 4 chr3 17631654 17631886 -209892692 + AluSq SINE Alu 1 231 -82 221 163 0 0 chr3 17631890 17631933 -209892645 + A-rich Low_complexity Low_complexity 1 43 0 1868 132 10 13 chr3 17632306 17632617 -209891961 - AluSx SINE Alu 0 312 3 216 300 0 17 chr3 17632720 17632780 -209891798 + L2 LINE L2 3253 3311 -2 588 294 56 10 chr3 17632989 17633186 -209891392 + MIR SINE MIR 8 213 -49 283 196 0 0 chr3 17633232 17633278 -209891300 + MIR SINE MIR 216 261 -1 1870 131 23 36 chr3 17633377 17633682 -209890896 + AluJb SINE Alu 1 301 -11 361 246 0 0 chr3 17634085 17634150 -209890428 + MER5A DNA MER1_type 125 189 0 * 782 315 165 24 chr3 17634150 17634732 -209889846 + L2 LINE L2 978 1642 -1672 242 180 56 56 chr3 17634759 17634848 -209889730 + L1M2 LINE L1 5785 5873 -427 1361 292 76 38 chr3 17634850 17635635 -209888943 + L2 LINE L2 2265 3071 -201 430 306 93 11 chr3 17635669 17635852 -209888726 - L2 LINE L2 -1 3312 3115 250 313 0 36 chr3 17635879 17635962 -209888616 - MIR SINE MIR -182 80 1 630 296 63 0 chr3 17636829 17637018 -209887560 + MIR SINE MIR 58 258 -4 378 0 0 0 chr3 17637632 17637674 -209886904 + (TG)n Simple_repeat Simple_repeat 1 42 0 198 0 0 0 chr3 17637673 17637695 -209886883 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 198 333 98 29 chr3 17637762 17637864 -209886714 - L2 LINE L2 -8 3305 3197 471 264 68 14 chr3 17638289 17638437 -209886141 + MIR SINE MIR 107 262 0 1278 211 57 60 chr3 17638446 17638528 -209886050 - MLT1C LTR MaLR -3 502 421 1530 200 13 29 chr3 17638528 17638843 -209885735 + AluJo SINE Alu 1 310 -2 1278 211 57 60 chr3 17638843 17639225 -209885353 - MLT1C LTR MaLR -84 421 46 370 320 0 0 chr3 17639459 17639556 -209885022 + MIR SINE MIR 44 140 -68 182 303 63 49 chr3 17640109 17640251 -209884327 - L2 LINE L2 -563 2751 2608 192 369 10 19 chr3 17640418 17640521 -209884057 - L3 LINE CR1 -15 1562 1461 1810 52 0 0 chr3 17641217 17641429 -209883149 + AluY SINE Alu 94 305 -6 216 0 0 0 chr3 17642282 17642306 -209882272 + (A)n Simple_repeat Simple_repeat 1 24 0 6744 181 34 25 chr3 17642544 17644043 -209880535 + L1MB7 LINE L1 3739 5251 -895 1870 152 42 115 chr3 17644047 17644474 -209880104 + MSTD LTR MaLR 1 396 0 7855 209 18 48 chr3 17644475 17645697 -209878881 + MSTD-int LTR MaLR 2 1155 -580 4325 178 31 23 chr3 17645697 17646474 -209878104 + LTR39 LTR ERV1 1 783 0 7855 209 18 48 chr3 17646474 17647010 -209877568 + MSTD-int LTR MaLR 1155 1706 -29 1978 180 69 19 chr3 17647030 17647407 -209877171 + MSTD LTR MaLR 1 396 0 4916 155 16 35 chr3 17647411 17648339 -209876239 + L1MB7 LINE L1 5255 6165 -19 698 25 0 0 chr3 17648489 17648569 -209876009 + L1PA2 LINE L1 19 98 -6048 * 38529 32 26 2 chr3 17648536 17653844 -209870734 + L1PA2 LINE L1 578 6018 -137 222 206 0 0 chr3 17653844 17653912 -209870666 + A-rich Low_complexity Low_complexity 1 68 0 434 273 162 15 chr3 17654072 17654257 -209870321 + MIR SINE MIR 5 214 -48 189 265 73 0 chr3 17655344 17655412 -209869166 - L3b LINE CR1 -336 1247 1175 226 330 45 11 chr3 17655747 17655835 -209868743 - MIR3 SINE MIR -50 158 68 298 315 54 34 chr3 17656305 17656454 -209868124 + MIR SINE MIR 96 247 -15 2015 236 55 54 chr3 17656526 17656555 -209868023 + L1ME3A LINE L1 5469 5496 -674 1828 167 37 45 chr3 17656555 17656932 -209867646 + MLT1A2 LTR MaLR 1 374 0 2015 236 55 54 chr3 17656932 17657436 -209867142 + L1ME3A LINE L1 5496 6006 -164 2111 88 0 11 chr3 17657436 17657710 -209866868 + AluSg SINE Alu 34 304 -6 2015 236 55 54 chr3 17657710 17657863 -209866715 + L1ME3A LINE L1 6006 6157 -13 336 320 47 47 chr3 17657948 17658204 -209866374 + L2 LINE L2 2518 2773 -541 21 0 0 0 chr3 17658645 17658666 -209865912 + AT_rich Low_complexity Low_complexity 1 21 0 246 257 80 35 chr3 17658684 17658797 -209865781 - MIR SINE MIR -51 211 94 964 132 0 0 chr3 17659015 17659144 -209865434 + FLAM_C SINE Alu 1 129 -4 2270 94 0 7 chr3 17659155 17659466 -209865112 + AluSc SINE Alu 1 309 0 298 262 159 0 chr3 17659609 17659716 -209864862 - L2 LINE L2 -4 3309 3186 1895 148 0 42 chr3 17659769 17660080 -209864498 - AluSx SINE Alu -14 298 1 489 172 86 11 chr3 17660267 17660360 -209864218 - AluJo SINE Alu -177 135 36 304 273 13 67 chr3 17660935 17661085 -209863493 + L2 LINE L2 3117 3258 -55 255 322 100 27 chr3 17661949 17662133 -209862445 + MIR SINE MIR 10 205 -35 232 186 0 0 chr3 17663135 17663178 -209861400 - MIR SINE MIR -112 150 108 226 257 98 98 chr3 17663491 17663756 -209860822 + L2 LINE L2 2850 3114 -158 * 585 251 18 35 chr3 17663723 17663894 -209860684 + MIR SINE MIR 48 215 -47 227 294 203 7 chr3 17664175 17664318 -209860260 - MIR SINE MIR -10 252 82 520 183 263 66 chr3 17664404 17664617 -209859961 + MIR SINE MIR 8 262 0 2178 106 17 0 chr3 17664995 17665288 -209859290 - AluSx SINE Alu -14 298 1 301 277 95 36 chr3 17665291 17665428 -209859150 - MIR SINE MIR -61 147 3 566 357 80 52 chr3 17667606 17668237 -209856341 - L2 LINE L2 -14 3258 2618 357 343 78 24 chr3 17668261 17668596 -209855982 - L2 LINE L2 -926 2388 2036 813 200 0 7 chr3 17668596 17668731 -209855847 + AluJo SINE Alu 2 135 -177 232 245 32 43 chr3 17669950 17670044 -209854534 - MIR SINE MIR -50 212 120 243 329 79 0 chr3 17670045 17670121 -209854457 + L2 LINE L2 3229 3310 -3 183 376 88 8 chr3 17670114 17670239 -209854339 - MIR SINE MIR -126 136 2 * 379 305 19 19 chr3 17671190 17671295 -209853283 - MIR3 SINE MIR -22 186 82 1959 141 24 3 chr3 17671750 17672048 -209852530 - AluSx SINE Alu -8 304 1 355 307 35 35 chr3 17672259 17672373 -209852205 + MIR3 SINE MIR 6 119 -89 494 311 147 11 chr3 17672509 17672686 -209851892 + MIR3 SINE MIR 2 202 -6 477 263 171 7 chr3 17673278 17673430 -209851148 - MER5A DNA MER1_type -1 188 12 200 298 192 10 chr3 17673461 17673565 -209851013 + L2 LINE L2 3139 3261 -11 438 289 50 16 chr3 17675202 17675323 -209849255 + MIR SINE MIR 2 126 -136 355 259 100 126 chr3 17677093 17677665 -209846913 - L1M2 LINE L1 -5475 1374 818 507 134 0 0 chr3 17678022 17678104 -209846474 + (CA)n Simple_repeat Simple_repeat 2 83 0 320 266 121 16 chr3 17678639 17678763 -209845815 + MIR SINE MIR 82 218 -44 275 302 50 115 chr3 17678999 17679320 -209845258 - L2 LINE L2 -32 3240 2941 287 362 121 24 chr3 17679343 17679550 -209845028 + L2 LINE L2 3032 3258 -14 2392 79 3 0 chr3 17679665 17679957 -209844621 - AluSp SINE Alu -20 293 1 210 342 26 0 chr3 17680466 17680542 -209844036 + L2 LINE L2 3162 3239 -33 191 288 108 81 chr3 17680604 17680715 -209843863 + L2 LINE L2 3136 3249 -23 269 366 69 0 chr3 17681799 17681900 -209842678 + MIR SINE MIR 16 123 -85 343 284 64 46 chr3 17682210 17682357 -209842221 + MIR SINE MIR 32 178 -67 342 246 0 88 chr3 17682622 17682736 -209841842 + MIR3 SINE MIR 70 173 -35 372 319 148 14 chr3 17683002 17683212 -209841366 - MIR SINE MIR 0 262 25 376 307 119 11 chr3 17683952 17684128 -209840450 + MIR SINE MIR 34 228 -34 191 275 110 55 chr3 17684193 17684302 -209840276 + MIR SINE MIR 32 146 -116 918 108 39 8 chr3 17684307 17684437 -209840141 + AluJb SINE Alu 163 296 -16 353 295 54 0 chr3 17684597 17684726 -209839852 - MIR SINE MIR -2 260 125 388 311 54 7 chr3 17685423 17685571 -209839007 - MIR SINE MIR -58 204 50 371 341 119 6 chr3 17685806 17685982 -209838596 + MIR SINE MIR 48 243 -19 303 312 37 28 chr3 17686141 17686250 -209838328 + L2 LINE L2 3123 3232 -40 216 273 0 0 chr3 17686252 17686329 -209838249 + GA-rich Low_complexity Low_complexity 4 80 0 325 278 53 20 chr3 17686954 17687105 -209837473 + L2 LINE L2 2814 2969 -303 1258 260 46 19 chr3 17687120 17687175 -209837403 - LTR16C LTR ERVL 0 491 439 16436 112 24 33 chr3 17687175 17689613 -209834965 + Tigger1 DNA MER2_type 1 2417 -1 1258 260 46 19 chr3 17689613 17689950 -209834628 - LTR16C LTR ERVL -52 439 89 405 200 70 35 chr3 17690117 17690232 -209834346 + L2 LINE L2 3137 3255 -17 332 292 104 60 chr3 17690831 17691744 -209832834 + L1M4 LINE L1 4370 5322 -824 2052 140 17 70 chr3 17691789 17692208 -209832370 - MER57A LTR ERV1 -1 387 7 629 291 25 0 chr3 17692568 17692764 -209831814 + MIR SINE MIR 40 240 -22 1834 175 13 0 chr3 17693883 17694191 -209830387 - AluJb SINE Alu 0 312 1 1920 173 7 0 chr3 17694491 17694786 -209829792 - AluJb SINE Alu -15 297 1 1323 275 45 19 chr3 17694786 17695047 -209829531 - LTR16B LTR ERVL -6 458 180 769 186 8 0 chr3 17695047 17695171 -209829407 + FLAM_A SINE Alu 1 125 -8 1323 275 45 19 chr3 17695171 17695335 -209829243 - LTR16B LTR ERVL -284 180 22 860 319 92 7 chr3 17695342 17695765 -209828813 - LTR16B LTR ERVL -5 459 1 516 213 74 111 chr3 17695802 17696046 -209828532 + MLT1K LTR MaLR 354 588 0 1917 178 0 0 chr3 17696217 17696520 -209828058 + AluJo SINE Alu 1 303 -9 217 156 125 62 chr3 17696616 17696680 -209827898 + L2 LINE L2 3244 3311 -2 1521 149 47 70 chr3 17696769 17697070 -209827508 + AluJo SINE Alu 18 311 -1 217 319 14 0 chr3 17697354 17697423 -209827155 + L2 LINE L2 3228 3297 -16 607 270 59 28 chr3 17697547 17697790 -209826788 - MIR SINE MIR 0 262 18 348 286 0 0 chr3 17698092 17698183 -209826395 - MIR SINE MIR -71 137 47 249 139 0 0 chr3 17698184 17698227 -209826351 + (T)n Simple_repeat Simple_repeat 1 43 0 205 267 33 67 chr3 17699508 17699598 -209824980 - MIR SINE MIR -81 127 40 387 216 80 74 chr3 17700310 17700486 -209824092 + MIR SINE MIR 37 213 -49 196 326 66 41 chr3 17701198 17701391 -209823187 + L2 LINE L2 2418 2615 -699 517 272 146 13 chr3 17701391 17701549 -209823029 + MER5A DNA MER1_type 4 182 -7 265 156 16 16 chr3 17701565 17701629 -209822949 - MER5A DNA MER1_type -95 94 31 676 295 50 96 chr3 17701936 17702331 -209822247 + LTR67 LTR ERVL 97 468 -89 1977 114 0 14 chr3 17702331 17702612 -209821966 - AluSx SINE Alu -9 303 27 676 295 50 96 chr3 17702612 17702697 -209821881 + LTR67 LTR ERVL 468 555 -2 2008 94 64 0 chr3 17702756 17703060 -209821518 - AluSg SINE Alu 0 321 1 464 302 56 22 chr3 17703073 17703252 -209821326 - MLT1J2 LTR MaLR 0 450 266 1216 307 141 4 chr3 17703566 17704061 -209820517 + MLT1K LTR MaLR 24 586 -2 506 270 31 13 chr3 17704372 17704531 -209820047 + MIR SINE MIR 90 251 -11 526 310 6 6 chr3 17704958 17705129 -209819449 - MIR SINE MIR -72 190 20 445 205 170 0 chr3 17705427 17705539 -209819039 + MIR SINE MIR 14 144 -118 663 236 32 25 chr3 17705542 17705699 -209818879 + MLT1D LTR MaLR 1 158 -347 410 215 0 0 chr3 17705714 17705793 -209818785 - L1M4 LINE L1 -1287 4859 4781 814 106 0 53 chr3 17705803 17705935 -209818643 - L1MB7 LINE L1 -16 6168 6044 503 254 9 0 chr3 17706025 17706135 -209818443 - MER81 DNA DNA 0 114 4 860 230 84 59 chr3 17706176 17706324 -209818254 + LTR16C LTR ERVL 69 212 -279 2243 42 0 4 chr3 17706324 17706586 -209817992 - AluY SINE Alu -19 292 32 860 230 84 59 chr3 17706586 17706759 -209817819 + LTR16C LTR ERVL 212 398 -93 639 250 17 56 chr3 17707382 17707440 -209817138 + MLT1G1 LTR MaLR 1 60 -535 2023 133 10 0 chr3 17707440 17707741 -209816837 - AluSg SINE Alu -6 304 1 639 250 17 56 chr3 17707741 17707862 -209816716 + MLT1G1 LTR MaLR 60 173 -422 464 174 69 142 chr3 17707857 17708066 -209816512 + MLT1G LTR MaLR 288 584 -5 * 181 273 18 18 chr3 17708308 17708363 -209816215 + MIR SINE MIR 21 75 -133 277 195 244 0 chr3 17708395 17708477 -209816101 + MIR SINE MIR 63 164 -98 365 190 13 13 chr3 17708581 17708660 -209815918 + MIR SINE MIR 36 114 -94 740 266 5 37 chr3 17708957 17709175 -209815403 + MIR SINE MIR 1 211 -51 1571 213 32 52 chr3 17709340 17709782 -209814796 - MER113 DNA MER1_type? -88 433 1 269 351 29 11 chr3 17709995 17710169 -209814409 + L1ME4a LINE L1 5620 5796 -2012 865 263 38 0 chr3 17710193 17710406 -209814172 - MIR SINE MIR -34 228 8 1549 128 120 8 chr3 17710448 17710706 -209813872 - AluJo SINE Alu -25 287 1 400 246 113 0 chr3 17710763 17710905 -209813673 + L1ME4a LINE L1 5961 6118 -3 185 121 0 0 chr3 17711005 17711038 -209813540 - MIR SINE MIR -1 261 229 298 281 9 88 chr3 17711080 17711194 -209813384 + MER91C DNA MER1_type 1 105 -35 635 258 26 0 chr3 17711209 17711364 -209813214 - MIR SINE MIR -85 177 19 671 300 6 0 chr3 17711457 17711637 -209812941 + MIR3 SINE MIR 19 199 -9 230 254 18 0 chr3 17712038 17712093 -209812485 + L1MC/D LINE L1 5852 5907 -1901 1187 200 0 0 chr3 17712275 17712514 -209812064 - AluJb SINE Alu 0 311 73 856 114 0 50 chr3 17712534 17712674 -209811904 + FLAM_C SINE Alu 1 133 0 2056 145 57 8 chr3 17712712 17713016 -209811562 - MLT1B LTR MaLR 0 390 63 2498 74 0 0 chr3 17713016 17713313 -209811265 - AluSg SINE Alu -2 308 12 2056 145 57 8 chr3 17713313 17713380 -209811198 - MLT1B LTR MaLR -327 63 1 305 317 150 6 chr3 17713607 17713774 -209810804 + MIR SINE MIR 56 246 -16 2671 176 52 2 chr3 17714166 17714205 -209810373 - MLT2B1 LTR ERVL 0 520 484 491 31 15 0 chr3 17714205 17714270 -209810308 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 2671 176 52 2 chr3 17714270 17714725 -209809853 - MLT2B1 LTR ERVL -36 484 1 925 291 53 18 chr3 17714725 17714972 -209809606 + MLT1K LTR MaLR 36 273 -315 2067 127 0 29 chr3 17714972 17715288 -209809290 + AluSx SINE Alu 1 307 -5 925 291 53 18 chr3 17715288 17715456 -209809122 + MLT1K LTR MaLR 273 516 -72 390 293 99 31 chr3 17715501 17715692 -209808886 - MER63A DNA MER1_type -4 206 3 1904 165 6 19 chr3 17715745 17716061 -209808517 + AluJo SINE Alu 1 312 0 244 359 119 6 chr3 17716130 17716289 -209808289 - MIR SINE MIR -52 210 34 2219 91 3 41 chr3 17716696 17717014 -209807564 + AluSx SINE Alu 1 306 -6 489 278 182 12 chr3 17717036 17717334 -209807244 + MLT1L LTR MaLR 142 544 -19 336 294 16 8 chr3 17717365 17717491 -209807087 + L1ME LINE L1 5693 5819 -302 1174 170 67 13 chr3 17717637 17717861 -209806717 + MER46A DNA MER2_type 1 236 0 2047 108 17 7 chr3 17718168 17718451 -209806127 + AluJb SINE Alu 1 287 -21 180 0 0 0 chr3 17718451 17718471 -209806107 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 541 240 194 34 chr3 17719548 17719873 -209804705 - MLT1J LTR MaLR -25 486 110 1683 189 10 7 chr3 17719965 17720266 -209804312 - AluJo SINE Alu -6 306 5 753 193 6 88 chr3 17720290 17720471 -209804107 - FRAM SINE Alu -18 158 1 221 291 87 0 chr3 17720595 17720698 -209803880 - MIR SINE MIR -61 147 36 335 374 26 5 chr3 17721007 17721202 -209803376 + MIR SINE MIR 47 245 -17 644 181 96 6 chr3 17721466 17721632 -209802946 + MIR SINE MIR 51 231 -31 183 341 24 12 chr3 17721691 17721776 -209802802 - MIR SINE MIR -165 97 12 679 269 148 40 chr3 17722021 17722400 -209802178 - MLT1J LTR MaLR -78 433 14 765 193 0 0 chr3 17722440 17722559 -209802019 + FLAM_A SINE Alu 1 119 -14 21 57 0 0 chr3 17722560 17722595 -209801983 + AT_rich Low_complexity Low_complexity 1 35 0 1801 168 3 7 chr3 17722780 17723084 -209801494 - AluJb SINE Alu -9 303 1 433 261 82 39 chr3 17723354 17723561 -209801017 + MLT1J2 LTR MaLR 20 235 -215 2411 158 29 7 chr3 17723681 17724137 -209800441 + L1MB7 LINE L1 5709 6174 -10 255 264 0 55 chr3 17724161 17724252 -209800326 + MLT1I LTR MaLR 323 408 -1 213 132 0 0 chr3 17724418 17724456 -209800122 + (TGGA)n Simple_repeat Simple_repeat 4 41 0 2240 140 85 18 chr3 17724605 17725006 -209799572 - MSTA LTR MaLR 0 428 1 586 262 36 86 chr3 17725220 17725556 -209799022 + L2 LINE L2 2949 3267 -5 406 284 157 0 chr3 17725673 17725807 -209798771 + MIR SINE MIR 13 167 -95 340 249 28 57 chr3 17725937 17726114 -209798464 - MER5A DNA MER1_type 0 189 18 181 267 0 0 chr3 17726105 17726150 -209798428 - MIR SINE MIR -101 161 117 * 393 228 0 0 chr3 17726203 17726295 -209798283 - MER5A DNA MER1_type -83 106 15 565 211 113 0 chr3 17726345 17726487 -209798091 - MER5B DNA MER1_type -20 158 1 2179 84 22 0 chr3 17726673 17726971 -209797607 + AluSc SINE Alu 1 304 0 427 251 89 45 chr3 17727517 17727696 -209796882 - MIR SINE MIR -27 235 49 2015 151 3 6 chr3 17728799 17729117 -209795461 + 7SLRNA srpRNA srpRNA 1 317 -3 953 261 17 0 chr3 17729267 17729505 -209795073 - MIR SINE MIR 0 262 21 659 203 68 21 chr3 17729523 17729715 -209794863 - L1ME3A LINE L1 -5 6165 5965 807 159 22 7 chr3 17729720 17729858 -209794720 - FRAM SINE Alu -24 152 13 2235 250 114 27 chr3 17729892 17730613 -209793965 - L1ME3A LINE L1 -225 5945 5288 1073 172 22 44 chr3 17730613 17730840 -209793738 - L1MB8 LINE L1 0 6178 5957 2235 250 114 27 chr3 17730840 17731763 -209792815 - L1ME3A LINE L1 -882 5288 4146 230 261 14 14 chr3 17732017 17732086 -209792492 - MLT1J LTR MaLR -214 297 229 278 219 55 0 chr3 17732201 17732274 -209792304 - MLT1L LTR MaLR -538 77 1 332 344 7 19 chr3 17732845 17732999 -209791579 + MIR3 SINE MIR 33 184 -24 180 0 0 0 chr3 17733111 17733131 -209791447 + (CCCCCA)n Simple_repeat Simple_repeat 3 22 0 685 185 88 76 chr3 17734124 17734263 -209790315 - MER5C DNA MER1_type -71 253 108 7643 26 6 0 chr3 17734263 17735389 -209789189 + L1PA5 LINE L1 5020 6150 -4 685 185 88 76 chr3 17735389 17735498 -209789080 - MER5C DNA MER1_type -216 108 2 269 253 149 40 chr3 17735511 17735685 -209788893 - MER117 DNA MER1_type -4 193 1 424 306 63 27 chr3 17736000 17736222 -209788356 - MIR SINE MIR -12 250 21 5506 129 4 2 chr3 17736222 17737045 -209787533 + L1PA15 LINE L1 5342 6165 0 2260 109 6 6 chr3 17737051 17737363 -209787215 + AluSp SINE Alu 1 312 -1 486 257 59 0 chr3 17737363 17737499 -209787079 + MER63C DNA MER1_type 187 330 -600 424 268 109 46 chr3 17739724 17739963 -209784615 - MARNA DNA Mariner -198 388 135 475 238 20 14 chr3 17740130 17740277 -209784301 - L1ME LINE L1 -381 5740 5593 1629 166 42 3 chr3 17740291 17740574 -209784004 + AluJb SINE Alu 1 294 -18 411 314 54 31 chr3 17740611 17740683 -209783895 - L1ME LINE L1 -687 5475 5406 2157 133 0 0 chr3 17740683 17740977 -209783601 - AluSx SINE Alu -14 298 5 411 314 54 31 chr3 17740977 17741245 -209783333 - L1ME LINE L1 -756 5406 5122 258 286 41 51 chr3 17741305 17741403 -209783175 + MARNA DNA Mariner 476 572 -14 222 319 14 0 chr3 17741433 17741505 -209783073 - L2 LINE L2 -9 3263 3191 886 304 84 27 chr3 17741749 17742517 -209782061 + L2 LINE L2 2252 3053 -219 313 210 0 0 chr3 17742663 17742725 -209781853 - MER91B DNA MER1_type -127 63 2 2458 77 3 19 chr3 17742971 17743283 -209781295 - AluSp SINE Alu -6 307 1 1013 174 111 73 chr3 17743656 17743944 -209780634 + L1ME1 LINE L1 5865 6163 -3 408 254 73 55 chr3 17744132 17744297 -209780281 + MIR SINE MIR 40 207 -55 1746 177 13 25 chr3 17744508 17744824 -209779754 + AluJb SINE Alu 1 312 0 310 238 115 16 chr3 17744917 17745039 -209779539 - MIR SINE MIR -55 207 74 1630 154 0 18 chr3 17745240 17745513 -209779065 + AluJo SINE Alu 43 310 -2 215 254 197 28 chr3 17745568 17745710 -209778868 + MIR SINE MIR 83 248 -14 394 179 19 4 chr3 17746570 17746676 -209777902 + MER5A DNA MER1_type 2 154 -35 2021 137 0 35 chr3 17746768 17746911 -209777667 + AluJb SINE Alu 1 147 -165 1873 158 7 3 chr3 17746911 17747214 -209777364 + AluSx SINE Alu 1 304 -8 2021 137 0 35 chr3 17747214 17747385 -209777193 + AluJb SINE Alu 147 304 -8 180 374 22 0 chr3 17747482 17747573 -209777005 - L2 LINE L2 -12 3260 3168 * 253 331 31 39 chr3 17747552 17747682 -209776896 - MIR SINE MIR -106 156 28 1921 144 7 7 chr3 17747718 17748017 -209776561 + AluJb SINE Alu 1 299 -13 25 51 0 0 chr3 17748019 17748058 -209776520 + AT_rich Low_complexity Low_complexity 1 39 0 2170 168 70 2 chr3 17748096 17748495 -209776083 + MSTB LTR MaLR 1 426 0 23 33 0 0 chr3 17748672 17748702 -209775876 + AT_rich Low_complexity Low_complexity 1 30 0 356 297 94 0 chr3 17748724 17748852 -209775726 + L1ME4a LINE L1 5961 6100 -21 267 103 0 0 chr3 17749246 17749285 -209775293 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 6180 43 5 0 chr3 17749311 17750054 -209774524 - L1PA4 LINE L1 -3 6152 5406 1907 150 0 11 chr3 17750128 17750414 -209774164 - AluJb SINE Alu -18 294 12 267 235 56 43 chr3 17750424 17750539 -209774039 + MIR SINE MIR 60 180 -63 2266 106 0 0 chr3 17750623 17750915 -209773663 + AluSg SINE Alu 1 292 -18 2091 232 120 48 chr3 17750916 17750933 -209773645 + HERV16 LTR ERVL 266 280 -4716 1404 180 153 36 chr3 17750933 17751350 -209773228 - MLT1C LTR MaLR -1 466 1 2091 232 120 48 chr3 17751350 17751731 -209772847 + HERV16 LTR ERVL 280 632 -4364 2262 102 16 0 chr3 17751731 17752036 -209772542 + AluSq SINE Alu 1 310 -3 2091 232 120 48 chr3 17752036 17752477 -209772101 + HERV16 LTR ERVL 632 1167 -3829 763 201 31 122 chr3 17752480 17752734 -209771844 - MLT2B1 LTR ERVL 0 520 290 1170 263 41 32 chr3 17752734 17752914 -209771664 + HERV16 LTR ERVL 1192 1369 -3716 2085 143 0 0 chr3 17752914 17753208 -209771370 + AluSx SINE Alu 1 294 -18 1170 263 41 32 chr3 17753208 17753786 -209770792 + HERV16 LTR ERVL 1369 2058 -3027 215 256 6 68 chr3 17753910 17753934 -209770644 + CT-rich Low_complexity Low_complexity 2 26 -140 2105 126 82 22 chr3 17753934 17754339 -209770239 + MSTB1 LTR MaLR 1 429 -3 215 256 6 68 chr3 17754339 17754490 -209770088 + CT-rich Low_complexity Low_complexity 26 166 0 1536 196 21 4 chr3 17754735 17755164 -209769414 + L1MB3 LINE L1 4560 5061 -1085 * 3438 146 17 9 chr3 17755163 17755822 -209768756 + L1MB3 LINE L1 5394 6142 -41 826 250 62 5 chr3 17755822 17756030 -209768548 + AluJo SINE Alu 1 220 -92 24 22 0 43 chr3 17756071 17756100 -209768478 + AT_rich Low_complexity Low_complexity 1 29 -15 1438 146 163 0 chr3 17756100 17756346 -209768232 - AluJo SINE Alu -15 287 2 24 22 0 43 chr3 17756346 17756362 -209768216 + AT_rich Low_complexity Low_complexity 29 44 0 318 74 0 19 chr3 17756362 17756416 -209768162 + L1MB4 LINE L1 6128 6180 0 696 219 67 11 chr3 17757172 17757350 -209767228 - MER5A DNA MER1_type -1 188 1 457 312 105 17 chr3 17757356 17757712 -209766866 - MLT1J2 LTR MaLR 0 409 20 326 284 11 11 chr3 17757909 17758004 -209766574 + MLT1K LTR MaLR 157 251 -337 791 232 33 0 chr3 17758395 17758606 -209765972 + L1MDa LINE L1 1849 2066 -4474 * 1268 222 69 15 chr3 17758593 17758926 -209765652 + L1M4 LINE L1 3872 4222 -1924 1587 183 63 3 chr3 17758926 17759210 -209765368 - AluJo SINE Alu -11 301 1 481 174 51 20 chr3 17759221 17759319 -209765259 + AluJo SINE Alu 113 213 -99 1161 124 96 0 chr3 17759515 17759693 -209764885 + AluSg/x SINE Alu 118 312 0 2021 122 10 3 chr3 17759697 17759993 -209764585 + AluY SINE Alu 1 298 -13 246 191 168 53 chr3 17760633 17760764 -209763814 + MIR SINE MIR 75 220 -42 285 342 151 25 chr3 17760775 17762037 -209762541 + L2 LINE L2 1630 3069 -203 25 0 0 0 chr3 17763054 17763079 -209761499 + AT_rich Low_complexity Low_complexity 1 25 0 373 132 0 5 chr3 17763244 17763304 -209761274 + Alu SINE Alu 2 52 -247 1979 122 0 49 chr3 17763766 17764094 -209760484 + AluSx SINE Alu 1 312 0 2069 125 46 24 chr3 17764105 17764434 -209760144 + MER1B DNA MER1_type 2 337 0 782 160 21 7 chr3 17764515 17764659 -209759919 + FRAM SINE Alu 1 146 -30 1748 183 0 31 chr3 17764932 17765067 -209759511 + AluJo SINE Alu 1 139 -173 1955 136 38 0 chr3 17765067 17765354 -209759224 + AluSq SINE Alu 1 298 -15 1748 183 0 31 chr3 17765354 17765540 -209759038 + AluJo SINE Alu 139 312 0 275 98 24 0 chr3 17765543 17765584 -209758994 + LTR23 LTR ERV1 318 359 -78 33153 93 7 8 chr3 17765642 17770247 -209754331 + L1P LINE L1 11 4612 -1534 2040 184 117 28 chr3 17770592 17771154 -209753424 - MLT1E2 LTR MaLR 0 624 1 2251 104 7 0 chr3 17772481 17772778 -209751800 + AluSx SINE Alu 1 299 -13 334 271 48 27 chr3 17772959 17773147 -209751431 + L1P4 LINE L1 5466 5657 -509 2247 95 7 10 chr3 17773418 17773724 -209750854 + AluSc SINE Alu 5 309 0 405 265 11 76 chr3 17774630 17774750 -209749828 - L1M4 LINE L1 -6363 179 74 2446 63 26 0 chr3 17774750 17775053 -209749525 - AluY SINE Alu 0 311 1 405 265 11 76 chr3 17775053 17775117 -209749461 - L1M4 LINE L1 -6468 74 7 839 228 65 81 chr3 17775121 17775493 -209749085 + L1M4 LINE L1 1964 2341 -4055 2074 120 0 34 chr3 17775493 17775817 -209748761 - AluSp SINE Alu 0 313 1 839 228 65 81 chr3 17775817 17775828 -209748750 + L1M4 LINE L1 2341 2351 -4045 2132 145 0 0 chr3 17775828 17776131 -209748447 - AluSx SINE Alu -9 303 1 839 228 65 81 chr3 17776131 17776176 -209748402 + L1M4 LINE L1 2351 2386 -4010 1334 193 25 4 chr3 17776180 17776455 -209748123 + L1M4 LINE L1 5328 5608 -645 * 4781 172 54 58 chr3 17776454 17776495 -209748083 + L1MB4 LINE L1 4274 4314 -1866 1622 146 97 0 chr3 17776495 17776804 -209747774 + MER44D DNA MER2_type 1 609 0 4781 172 54 58 chr3 17776804 17777534 -209747044 + L1MB4 LINE L1 4314 5045 -1135 2470 83 0 0 chr3 17777534 17777836 -209746742 - AluY SINE Alu -9 302 1 4781 172 54 58 chr3 17777836 17778980 -209745598 + L1MB4 LINE L1 5045 6172 -8 1087 95 0 7 chr3 17779068 17779215 -209745363 + AluSq/x SINE Alu 1 146 -167 2244 278 100 47 chr3 17779220 17779298 -209745280 - L1MEc LINE L1 -4487 1909 1837 2102 57 30 50 chr3 17779298 17779597 -209744981 - AluY SINE Alu -18 293 1 2244 278 100 47 chr3 17779597 17779608 -209744970 - L1MEc LINE L1 -4559 1837 1828 2642 40 0 0 chr3 17779608 17779910 -209744668 - AluY SINE Alu -9 302 1 2244 278 100 47 chr3 17779910 17781461 -209743117 - L1MEc LINE L1 -4568 1828 181 1265 53 0 0 chr3 17781461 17781612 -209742966 - AluY SINE Alu 0 311 161 627 232 7 13 chr3 17781613 17781764 -209742814 - L1MEc LINE L1 -6209 187 38 192 77 0 0 chr3 17783835 17783861 -209740717 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1916 138 0 4 chr3 17783870 17784145 -209740433 - AluJo SINE Alu -36 276 3 817 262 42 37 chr3 17784409 17784817 -209739761 + LTR16A LTR ERVL 3 444 -6 2623 131 74 59 chr3 17784914 17785441 -209739137 + MER6A DNA MER2_type 1 535 -70 5072 133 8 6 chr3 17785441 17786874 -209737704 + L1MA4 LINE L1 4582 6020 -280 349 161 99 12 chr3 17786884 17786965 -209737613 + L1MB4 LINE L1 6093 6180 0 530 154 0 0 chr3 17786979 17787057 -209737521 + MER6A DNA MER2_type 524 601 -4 1203 131 35 20 chr3 17787230 17787428 -209737150 - AluJb SINE Alu -26 286 86 22 35 0 0 chr3 17787489 17787518 -209737060 + AT_rich Low_complexity Low_complexity 1 29 0 528 237 49 39 chr3 17787959 17788146 -209736432 - MIR3 SINE MIR -11 197 13 970 224 35 26 chr3 17791104 17791332 -209733246 + MIR SINE MIR 28 257 -5 2404 144 0 15 chr3 17791357 17791753 -209732825 - MLT1B LTR MaLR 0 390 1 278 215 196 28 chr3 17792810 17792917 -209731661 - MIR3 SINE MIR 0 208 84 1926 189 46 9 chr3 17793035 17793500 -209731078 + L1MB2 LINE L1 5715 6195 0 1743 161 22 59 chr3 17793508 17793832 -209730746 + AluJo SINE Alu 1 312 0 186 103 0 0 chr3 17793832 17793861 -209730717 + (GA)n Simple_repeat Simple_repeat 1 29 0 279 0 0 0 chr3 17793874 17793905 -209730673 + (CA)n Simple_repeat Simple_repeat 2 32 0 501 280 71 24 chr3 17796890 17797023 -209727555 - MIR3 SINE MIR -1 207 63 2354 90 0 3 chr3 17797023 17797333 -209727245 + AluSc SINE Alu 1 309 0 501 280 71 24 chr3 17797333 17797367 -209727211 - MIR3 SINE MIR -145 63 32 374 319 77 22 chr3 17797635 17797817 -209726761 + MIR3 SINE MIR 16 207 -1 896 110 51 16 chr3 17798231 17798383 -209726195 + L1PB4 LINE L1 5768 5913 -243 841 83 107 0 chr3 17798383 17798504 -209726074 + L1PB4 LINE L1 6011 6144 -12 896 110 51 16 chr3 17798504 17798536 -209726042 + L1PB4 LINE L1 5913 6144 -12 189 0 0 0 chr3 17799403 17799424 -209725154 + (T)n Simple_repeat Simple_repeat 1 21 0 2534 58 0 3 chr3 17799954 17800264 -209724314 - AluY SINE Alu -2 309 1 259 65 43 0 chr3 17800385 17800431 -209724147 + (CA)n Simple_repeat Simple_repeat 1 48 0 272 154 0 0 chr3 17800539 17800591 -209723987 - HAL1 LINE L1 -142 2365 2314 506 136 0 0 chr3 17800592 17800673 -209723905 - AluS SINE Alu -11 301 221 4211 154 33 25 chr3 17800996 17801873 -209722705 + L1MB4 LINE L1 5297 6180 0 699 159 113 20 chr3 17802328 17802479 -209722099 + MER63 DNA MER1_type 897 1061 0 303 95 0 0 chr3 17804638 17804680 -209719898 + 5S rRNA rRNA 1 42 -79 380 282 98 41 chr3 17805021 17805266 -209719312 + L2 LINE L2 3003 3261 -52 201 312 39 13 chr3 17806096 17806173 -209718405 + L2 LINE L2 3227 3305 -8 363 302 76 6 chr3 17806290 17806462 -209718116 + MIR SINE MIR 21 204 -58 887 252 73 3 chr3 17807306 17807592 -209716986 + L1ME LINE L1 5479 5784 -380 686 144 38 8 chr3 17807618 17807764 -209716814 - L1MD3 LINE L1 0 7995 7632 701 232 61 77 chr3 17807767 17808321 -209716257 + MER51A LTR ERV1 1 640 0 210 296 102 71 chr3 17808745 17808843 -209715735 + L3 LINE CR1 1472 1572 -5 1308 225 65 8 chr3 17809089 17809445 -209715133 - MLT1B-int LTR MaLR -989 382 7 280 205 0 71 chr3 17809467 17809579 -209714999 - MLT1B LTR MaLR -15 375 272 495 261 28 17 chr3 17809987 17810167 -209714411 + HAL1 LINE L1 1621 1802 -705 960 81 0 0 chr3 17810292 17810415 -209714163 + AluY SINE Alu 1 123 -188 195 42 0 0 chr3 17810434 17810458 -209714120 + (CAAAA)n Simple_repeat Simple_repeat 1 24 0 886 177 0 6 chr3 17811418 17811593 -209712985 - L1MC/D LINE L1 -623 5619 5446 * 1021 248 18 0 chr3 17811591 17811869 -209712709 + L1MC/D LINE L1 4654 4936 -1210 737 224 125 11 chr3 17811926 17812190 -209712388 + L1MC/D LINE L1 5032 5325 -821 867 212 12 0 chr3 17812195 17812365 -209712213 + FRAM SINE Alu 1 172 -4 372 104 26 26 chr3 17812373 17812450 -209712128 + GA-rich Low_complexity Low_complexity 3 79 0 1360 213 9 14 chr3 17812463 17812810 -209711768 + L1MC/D LINE L1 5363 5707 -535 24 0 0 0 chr3 17812814 17812838 -209711740 + AT_rich Low_complexity Low_complexity 1 24 0 1060 105 0 0 chr3 17812946 17813089 -209711489 + AluSc SINE Alu 138 280 -29 2365 89 0 6 chr3 17813125 17813440 -209711138 + AluSq SINE Alu 1 313 0 259 362 7 13 chr3 17813974 17814126 -209710452 + LTR33 LTR ERVL 1 151 -370 2117 183 13 15 chr3 17815670 17816129 -209708449 + L1M2 LINE L1 4877 5334 -812 2324 164 11 19 chr3 17816146 17816619 -209707959 + L1M2 LINE L1 5301 5771 -520 1391 101 0 0 chr3 17816634 17816822 -209707756 + AluSg SINE Alu 1 188 -122 2531 52 0 3 chr3 17817269 17817579 -209706999 - AluY SINE Alu -2 309 1 46 45 0 0 chr3 17818806 17818873 -209705705 + AT_rich Low_complexity Low_complexity 1 67 0 886 108 8 0 chr3 17820005 17820135 -209704443 + L1PA16 LINE L1 6027 6157 -9 4259 142 36 26 chr3 17820138 17820998 -209703580 - L1MA8 LINE L1 -150 6141 5273 2389 83 0 6 chr3 17823574 17823887 -209700691 + AluY SINE Alu 1 311 0 940 219 92 15 chr3 17825361 17825686 -209698892 - L1ME2 LINE L1 -8 6156 5807 390 264 71 76 chr3 17825700 17825897 -209698681 + L1MC3 LINE L1 7100 7470 -525 861 271 50 85 chr3 17826063 17826546 -209698032 + MLT1K LTR MaLR 123 588 0 1673 167 37 14 chr3 17826729 17827083 -209697495 - L1MA4 LINE L1 0 6300 5939 269 334 141 10 chr3 17827304 17827513 -209697065 - MIR SINE MIR -14 248 18 272 154 0 0 chr3 17828097 17828149 -209696429 - HAL1 LINE L1 -142 2365 2314 2280 100 3 0 chr3 17828150 17828450 -209696128 - AluSq SINE Alu -12 301 1 276 30 0 0 chr3 17828580 17828613 -209695965 + (TG)n Simple_repeat Simple_repeat 2 34 0 815 216 0 0 chr3 17828614 17828762 -209695816 - FRAM SINE Alu -29 147 1 212 0 0 35 chr3 17828762 17828791 -209695787 + (TG)n Simple_repeat Simple_repeat 1 28 0 1062 209 0 0 chr3 17828897 17829093 -209695485 + Tigger7 DNA MER2_type 17 212 -521 294 125 0 0 chr3 17830291 17830339 -209694239 + (CA)n Simple_repeat Simple_repeat 2 49 0 545 291 39 24 chr3 17831099 17831432 -209693146 - L1MEd LINE L1 -4862 1257 920 298 298 114 32 chr3 17831731 17831889 -209692689 - L2 LINE L2 0 3272 3102 228 35 0 0 chr3 17832156 17832185 -209692393 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 289 311 58 18 chr3 17832258 17832483 -209692095 + L1M4 LINE L1 3897 4130 -2016 3247 221 17 31 chr3 17832625 17833320 -209691258 - L1MC2 LINE L1 -282 6062 5381 2598 90 22 3 chr3 17833320 17833686 -209690892 - THE1C LTR MaLR -2 373 1 3247 221 17 31 chr3 17833686 17834078 -209690500 - L1MC2 LINE L1 -963 5381 4985 647 367 78 35 chr3 17834379 17835509 -209689069 + L2 LINE L2 989 2167 -1147 325 237 0 40 chr3 17835596 17835672 -209688906 + MER45A DNA AcHobo 5 77 -101 1444 146 23 0 chr3 17835726 17835986 -209688592 - L1MA2 LINE L1 0 6304 6039 362 147 29 15 chr3 17835987 17836055 -209688523 + MER45A DNA AcHobo 100 168 -10 247 214 38 0 chr3 17836265 17836396 -209688182 + (TA)n Simple_repeat Simple_repeat 2 137 0 662 318 34 0 chr3 17836588 17836824 -209687754 + MIR SINE MIR 19 262 0 234 0 0 0 chr3 17836853 17836879 -209687699 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1261 233 64 22 chr3 17837679 17838087 -209686491 + MLT1C LTR MaLR 42 466 -1 1312 251 19 6 chr3 17838088 17838450 -209686128 + MLT1C-int LTR MaLR 1 367 -1004 236 204 0 0 chr3 17839058 17839107 -209685471 + T-rich Low_complexity Low_complexity 1 49 0 2486 118 8 5 chr3 17839599 17839973 -209684605 - THE1C LTR MaLR 0 375 1 21 26 0 26 chr3 17841305 17841331 -209683247 + AT_rich Low_complexity Low_complexity 1 26 -12 4802 92 20 28 chr3 17841331 17841514 -209683064 - L1PB1 LINE L1 -2 6149 5966 3636 107 99 33 chr3 17841514 17841564 -209683014 + LTR12 LTR ERV1 1 46 -642 2395 76 3 0 chr3 17841564 17841866 -209682712 - AluY SINE Alu -8 303 1 3636 107 99 33 chr3 17841866 17842460 -209682118 + LTR12 LTR ERV1 46 688 0 4802 92 20 28 chr3 17842460 17842635 -209681943 - L1PB1 LINE L1 -185 5966 5791 1600 100 4 9 chr3 17842635 17842865 -209681713 - AluY SINE Alu -16 295 67 4802 92 20 28 chr3 17842865 17842883 -209681695 - L1PB1 LINE L1 -360 5791 5774 351 0 0 0 chr3 17842883 17842922 -209681656 + (TG)n Simple_repeat Simple_repeat 2 40 0 4802 92 20 28 chr3 17842922 17843282 -209681296 - L1PB1 LINE L1 -377 5774 5417 21 26 0 26 chr3 17843282 17843294 -209681284 + AT_rich Low_complexity Low_complexity 26 38 0 270 0 0 0 chr3 17843401 17843431 -209681147 + (CA)n Simple_repeat Simple_repeat 1 30 0 2774 16 0 0 chr3 17844899 17845203 -209679375 - AluYa5 SINE Alu -7 304 1 279 0 0 0 chr3 17845232 17845263 -209679315 + (A)n Simple_repeat Simple_repeat 1 31 0 1422 165 0 0 chr3 17845546 17845764 -209678814 - AluJo SINE Alu -14 298 81 220 380 10 10 chr3 17846071 17846171 -209678407 + L2 LINE L2 2642 2741 -573 238 302 10 21 chr3 17846229 17846325 -209678253 - L2 LINE L2 -1 3271 3177 1159 248 26 0 chr3 17847245 17847556 -209677022 - L1MB7 LINE L1 -456 5722 5404 1550 195 25 42 chr3 17847560 17847991 -209676587 + L1MB7 LINE L1 5752 6175 -9 25 51 0 0 chr3 17849277 17849316 -209675262 + AT_rich Low_complexity Low_complexity 1 39 0 2123 105 7 3 chr3 17849316 17849602 -209674976 - AluSp SINE Alu -26 287 1 220 226 75 0 chr3 17852332 17852385 -209672193 - MIR SINE MIR -116 146 90 22 35 0 0 chr3 17853747 17853776 -209670802 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr3 17853842 17853877 -209670701 + AT_rich Low_complexity Low_complexity 1 35 0 32 75 0 0 chr3 17855798 17855865 -209668713 + GC_rich Low_complexity Low_complexity 1 67 0 1813 154 0 46 chr3 17856968 17857293 -209667285 - AluJb SINE Alu -2 310 1 3953 164 65 44 chr3 17857296 17857376 -209667202 - L1MB7 LINE L1 0 6184 6107 2105 106 31 3 chr3 17857376 17857668 -209666910 + AluSx SINE Alu 1 300 -12 3953 164 65 44 chr3 17857668 17858323 -209666255 - L1MB7 LINE L1 -77 6107 5467 1466 143 5 5 chr3 17858323 17858546 -209666032 - AluJo SINE Alu -9 303 81 3953 164 65 44 chr3 17858546 17858800 -209665778 - L1MB7 LINE L1 -717 5467 5220 733 195 0 0 chr3 17858800 17858956 -209665622 - FLAM_A SINE Alu 0 157 2 3953 164 65 44 chr3 17858956 17859183 -209665395 - L1MB7 LINE L1 -964 5220 4941 449 220 104 54 chr3 17859393 17859634 -209664944 - MER112 DNA MER1_type -3 253 1 428 248 40 10 chr3 17859653 17859754 -209664824 - L2 LINE L2 0 3272 3169 2046 103 50 17 chr3 17860922 17861224 -209663354 + AluSx SINE Alu 1 312 0 2184 131 0 10 chr3 17861376 17861689 -209662889 + AluSx SINE Alu 1 310 -2 523 173 273 13 chr3 17861707 17861857 -209662721 + MER5A DNA MER1_type 1 189 0 21 36 0 0 chr3 17862329 17862357 -209662221 + AT_rich Low_complexity Low_complexity 1 28 0 361 268 160 11 chr3 17862484 17862867 -209661711 + L1ME4a LINE L1 5678 6115 -6 21 36 0 0 chr3 17862959 17862987 -209661591 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 17863396 17863418 -209661160 + AT_rich Low_complexity Low_complexity 1 22 0 2875 7 0 0 chr3 17863424 17863734 -209660844 + AluYa5 SINE Alu 1 310 -1 207 0 0 0 chr3 17863809 17863832 -209660746 + (CA)n Simple_repeat Simple_repeat 2 24 0 1981 152 7 0 chr3 17864233 17864536 -209660042 - AluJb SINE Alu -3 309 5 399 252 65 9 chr3 17864562 17864669 -209659909 - L2 LINE L2 -4 3309 3197 38 22 0 0 chr3 17865100 17865145 -209659433 + AT_rich Low_complexity Low_complexity 1 45 0 1234 171 39 12 chr3 17867682 17867939 -209656639 + L1MB5 LINE L1 5911 6174 0 291 283 42 17 chr3 17868348 17868468 -209656110 + MER5C DNA MER1_type 2 124 -200 2256 107 0 13 chr3 17868610 17868908 -209655670 - AluSx SINE Alu -18 294 1 235 346 12 0 chr3 17868938 17869019 -209655559 - L2 LINE L2 -38 3234 3153 602 288 96 5 chr3 17869051 17869270 -209655308 + L3 LINE CR1 1335 1573 -4 215 136 0 153 chr3 17870072 17870131 -209654447 + L2 LINE L2 3264 3313 0 180 176 0 0 chr3 17870418 17870452 -209654126 + CT-rich Low_complexity Low_complexity 4 37 0 227 344 0 24 chr3 17870478 17870603 -209653975 + CT-rich Low_complexity Low_complexity 1 122 0 327 256 26 0 chr3 17871012 17871090 -209653488 + L2 LINE L2 3223 3302 -11 181 228 18 70 chr3 17871042 17871099 -209653479 + MIR SINE MIR 209 262 0 * 617 242 169 29 chr3 17871368 17871467 -209653111 - MIR SINE MIR -2 260 176 2179 149 0 20 chr3 17871467 17871810 -209652768 - MER1B DNA MER1_type 0 337 2 617 242 169 29 chr3 17871810 17871946 -209652632 - MIR SINE MIR -86 176 1 2556 40 0 7 chr3 17872222 17872525 -209652053 + AluY SINE Alu 1 301 -10 207 341 102 21 chr3 17873246 17873490 -209651088 - L2 LINE L2 -1005 2309 2031 1762 164 73 0 chr3 17873490 17873777 -209650801 + AluJb SINE Alu 1 308 -4 207 341 102 21 chr3 17873777 17873857 -209650721 - L2 LINE L2 -1283 2031 1959 559 193 146 10 chr3 17873878 17874070 -209650508 - MER63 DNA MER1_type -37 1024 807 1577 178 7 43 chr3 17874214 17874518 -209650060 - AluJb SINE Alu -15 297 5 2421 85 0 0 chr3 17874541 17874848 -209649730 - AluYa5 SINE Alu -4 307 1 297 0 0 0 chr3 17874878 17874911 -209649667 + (A)n Simple_repeat Simple_repeat 1 33 0 1945 121 0 0 chr3 17875192 17875456 -209649122 - AluJo SINE Alu -14 298 35 2520 219 73 55 chr3 17877316 17877460 -209647118 + L1MC4a LINE L1 6629 6769 -1039 1325 184 4 0 chr3 17877460 17877694 -209646884 + MER46A DNA MER2_type 1 235 -1 2520 219 73 55 chr3 17877694 17878081 -209646497 + L1MC4a LINE L1 6769 7148 -660 2106 120 11 0 chr3 17878081 17878365 -209646213 + AluSq SINE Alu 1 287 -26 252 0 0 0 chr3 17878365 17878393 -209646185 + (TTAA)n Simple_repeat Simple_repeat 3 30 0 2520 219 73 55 chr3 17878393 17878914 -209645664 + L1MC4a LINE L1 7148 7676 -132 3275 130 47 0 chr3 17878914 17879466 -209645112 - L1MA5 LINE L1 -2 6298 5721 2520 219 73 55 chr3 17879466 17879594 -209644984 + L1MC4a LINE L1 7676 7800 -8 1209 113 79 29 chr3 17880459 17880699 -209643879 + L1MB3 LINE L1 5930 6181 -2 1641 183 0 0 chr3 17882055 17882323 -209642255 - AluJo SINE Alu -7 305 38 21 71 0 0 chr3 17882531 17882573 -209642005 + AT_rich Low_complexity Low_complexity 1 42 0 22 56 0 0 chr3 17883003 17883039 -209641539 + AT_rich Low_complexity Low_complexity 1 36 0 219 292 62 0 chr3 17884028 17884093 -209640485 - MIR SINE MIR -110 152 84 291 157 0 0 chr3 17884291 17884342 -209640236 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1769 153 13 16 chr3 17884680 17884987 -209639591 + AluJb SINE Alu 1 306 -6 185 325 157 0 chr3 17885921 17886004 -209638574 + L2 LINE L2 3198 3293 -20 204 302 222 28 chr3 17886408 17886696 -209637882 - L2 LINE L2 -2 3311 2968 1789 168 0 14 chr3 17886874 17887192 -209637386 - AluJo SINE Alu 0 314 1 485 335 33 9 chr3 17887568 17887780 -209636798 - MIR SINE MIR -9 253 37 2024 130 0 0 chr3 17888107 17888383 -209636195 + AluSx SINE Alu 25 300 -12 301 267 10 69 chr3 17888599 17888700 -209635878 + MIR3 SINE MIR 86 180 -28 398 288 51 8 chr3 17888929 17889047 -209635531 + L2 LINE L2 3190 3312 -1 2126 93 3 56 chr3 17889094 17889229 -209635349 + AluSx SINE Alu 4 145 -167 2134 111 7 0 chr3 17889229 17889528 -209635050 + AluSq SINE Alu 3 303 0 2126 93 3 56 chr3 17889528 17889712 -209634866 + AluSx SINE Alu 145 307 -5 1065 246 64 25 chr3 17890910 17891317 -209633261 - HAL1 LINE L1 -426 2081 1659 292 275 0 2 chr3 17891349 17891450 -209633128 - L1MC4 LINE L1 0 8042 7896 261 0 0 0 chr3 17891470 17891499 -209633079 + (CA)n Simple_repeat Simple_repeat 2 30 0 1506 226 104 50 chr3 17891558 17892183 -209632395 - L1MC4 LINE L1 -294 7748 7090 849 160 0 18 chr3 17892183 17892415 -209632163 + (TCCA)n Simple_repeat Simple_repeat 1 227 0 1510 292 138 53 chr3 17892450 17893647 -209630931 - HAL1 LINE L1 -1206 1301 4 193 344 16 0 chr3 17894112 17894173 -209630405 - L2 LINE L2 -1 3312 3251 298 196 70 20 chr3 17894950 17895050 -209629528 + L1ME LINE L1 5491 5590 -574 315 281 118 20 chr3 17895060 17895213 -209629365 + L1ME LINE L1 5415 5582 -584 521 282 110 29 chr3 17895241 17895550 -209629028 - HAL1b LINE L1 -770 578 245 2441 77 0 0 chr3 17897265 17897565 -209627013 - AluY SINE Alu -11 300 1 216 0 0 0 chr3 17897808 17897832 -209626746 + (A)n Simple_repeat Simple_repeat 1 24 0 762 208 8 0 chr3 17897838 17897968 -209626610 + FLAM_A SINE Alu 1 131 -2 1396 170 0 4 chr3 17897970 17898217 -209626361 + L1MA7 LINE L1 3516 3761 -2385 468 76 0 45 chr3 17898217 17898283 -209626295 + Alu SINE Alu 234 296 -14 7705 152 45 5 chr3 17898283 17900263 -209624315 + L1MA7 LINE L1 3919 5980 -311 2575 124 22 10 chr3 17900263 17900665 -209623913 + L1PA16 LINE L1 5752 6158 -8 27 29 0 0 chr3 17900956 17900990 -209623588 + AT_rich Low_complexity Low_complexity 1 34 0 1921 108 32 25 chr3 17900994 17901310 -209623268 + L1MA7 LINE L1 5974 6291 0 24 0 0 0 chr3 17901344 17901368 -209623210 + AT_rich Low_complexity Low_complexity 1 24 0 723 295 41 15 chr3 17901402 17901741 -209622837 + L1ME4a LINE L1 5546 5893 -228 404 226 37 55 chr3 17901761 17901873 -209622705 + L1ME4a LINE L1 5950 6060 -61 2604 62 0 0 chr3 17901873 17902181 -209622397 + AluY SINE Alu 1 308 -3 404 226 37 55 chr3 17902181 17902232 -209622346 + L1ME4a LINE L1 6060 6110 -11 378 377 16 21 chr3 17902374 17902565 -209622013 + L2 LINE L2 2782 2971 -343 720 178 30 11 chr3 17904316 17904582 -209619996 - L1MA9 LINE L1 -22 6290 5924 741 167 40 0 chr3 17904582 17904683 -209619895 - MSTA LTR MaLR 0 428 323 977 69 21 35 chr3 17904683 17904828 -209619750 + MER30 DNA MER1_type 1 143 -87 279 0 0 0 chr3 17904828 17904859 -209619719 + (TG)n Simple_repeat Simple_repeat 2 32 0 2750 72 56 8 chr3 17905262 17905605 -209618973 - L1PB1 LINE L1 -2 6149 5824 411 21 0 0 chr3 17905605 17905653 -209618925 + (TG)n Simple_repeat Simple_repeat 2 49 0 270 0 0 0 chr3 17905652 17905682 -209618896 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 2750 72 56 8 chr3 17905653 17905713 -209618865 - L1PB1 LINE L1 -327 5824 5757 1626 133 6 71 chr3 17905713 17905854 -209618724 - L1PB1 LINE L1 -687 5464 5315 2390 74 0 7 chr3 17905854 17906151 -209618427 - AluSc SINE Alu -14 295 1 1626 133 6 71 chr3 17906151 17906507 -209618071 - L1PB1 LINE L1 -836 5315 4987 848 96 0 0 chr3 17906508 17906612 -209617966 + MER30 DNA MER1_type 127 230 0 660 121 174 23 chr3 17906612 17906743 -209617835 - MSTA LTR MaLR -93 335 185 1131 97 143 0 chr3 17907860 17908035 -209616543 - MSTA LTR MaLR -228 200 1 922 121 0 0 chr3 17908038 17908170 -209616408 - L1MA9 LINE L1 -387 5925 5794 180 0 0 0 chr3 17908170 17908190 -209616388 + (TATG)n Simple_repeat Simple_repeat 3 22 0 2021 153 3 18 chr3 17908191 17908531 -209616047 + L1M2 LINE L1 5451 5785 -527 2081 116 0 10 chr3 17908879 17909171 -209615407 - AluSq SINE Alu -24 289 1 22 0 0 0 chr3 17909172 17909194 -209615384 + AT_rich Low_complexity Low_complexity 1 22 0 3157 176 9 18 chr3 17909204 17909773 -209614805 + L1MB7 LINE L1 5621 6184 0 1931 206 48 7 chr3 17909784 17910303 -209614275 + L1MC3 LINE L1 7301 7908 -87 552 235 72 7 chr3 17910305 17910458 -209614120 + MIR SINE MIR 100 262 0 2547 47 0 3 chr3 17910811 17911112 -209613466 + AluY SINE Alu 1 300 -11 851 144 58 23 chr3 17911176 17911349 -209613229 - MER53 DNA DNA -10 179 1 2021 127 7 0 chr3 17911380 17911663 -209612915 + AluSx SINE Alu 7 291 -21 1746 121 36 78 chr3 17911722 17912028 -209612550 + AluJb SINE Alu 1 293 -19 270 217 33 0 chr3 17912633 17912693 -209611885 + GA-rich Low_complexity Low_complexity 4 65 0 838 107 8 8 chr3 17912802 17912924 -209611654 - L1MA1 LINE L1 0 6302 6181 360 0 0 0 chr3 17912967 17913007 -209611571 + (TC)n Simple_repeat Simple_repeat 1 40 0 229 313 0 0 chr3 17913872 17913920 -209610658 + L2 LINE L2 3231 3278 -35 2252 90 0 53 chr3 17914063 17914385 -209610193 + AluSx SINE Alu 1 305 -7 33 56 0 0 chr3 17917706 17917760 -209606818 + AT_rich Low_complexity Low_complexity 1 54 0 367 164 74 57 chr3 17918020 17918142 -209606436 - L1ME4a LINE L1 -1 6120 5997 2050 86 0 4 chr3 17918191 17918446 -209606132 - AluSc SINE Alu -12 297 44 1699 110 0 13 chr3 17918446 17918681 -209605897 - AluSp SINE Alu -80 233 1 200 59 29 0 chr3 17918717 17918751 -209605827 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2314 113 7 0 chr3 17918799 17919109 -209605469 - AluSx SINE Alu 0 312 1 184 196 52 113 chr3 17920014 17920111 -209604467 + L2 LINE L2 3173 3263 -9 22 35 0 0 chr3 17920411 17920440 -209604138 + AT_rich Low_complexity Low_complexity 1 29 0 2388 74 0 0 chr3 17920916 17921215 -209603363 - AluY SINE Alu -12 299 1 575 235 109 80 chr3 17921288 17921526 -209603052 + MIR SINE MIR 8 252 -10 243 0 0 0 chr3 17921990 17922017 -209602561 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1756 152 22 4 chr3 17922070 17922340 -209602238 - AluJo SINE Alu -35 277 3 472 292 88 95 chr3 17922358 17922632 -209601946 + L2 LINE L2 2987 3258 -14 2359 91 3 0 chr3 17923335 17923633 -209600945 + AluSq SINE Alu 1 299 -14 851 113 0 0 chr3 17923815 17923930 -209600648 - Alu SINE Alu -11 299 185 2277 106 0 0 chr3 17924141 17924444 -209600134 - AluSc SINE Alu -6 303 1 243 224 20 0 chr3 17924576 17924625 -209599953 - L2 LINE L2 0 3313 3264 223 269 77 0 chr3 17924591 17924643 -209599935 - MIR SINE MIR -10 252 197 * 1479 157 94 31 chr3 17925216 17925643 -209598935 + AluJo SINE Alu 1 445 0 327 350 209 6 chr3 17925667 17925830 -209598748 - MER91A DNA MER1_type 0 196 1 2295 136 30 103 chr3 17925940 17926038 -209598540 - L1MB7 LINE L1 -3 6181 6077 2318 94 3 3 chr3 17926038 17926345 -209598233 + AluSp SINE Alu 1 307 -6 2295 136 30 103 chr3 17926345 17926558 -209598020 - L1MB7 LINE L1 -107 6077 5926 2174 103 0 3 chr3 17926558 17926850 -209597728 - AluSg SINE Alu -11 299 9 2295 136 30 103 chr3 17926850 17927103 -209597475 - L1MB7 LINE L1 -258 5926 5656 201 230 0 0 chr3 17927171 17927245 -209597333 + T-rich Low_complexity Low_complexity 1 74 0 2442 75 3 3 chr3 17928432 17928737 -209595841 - AluSp SINE Alu -8 305 1 1602 102 3 221 chr3 17928748 17929129 -209595449 - AluSx SINE Alu -3 299 2 548 231 41 103 chr3 17929171 17929414 -209595164 - L2 LINE L2 -3 3310 3083 310 358 33 40 chr3 17929485 17929636 -209594942 - L2 LINE L2 -2 3270 3121 458 195 110 26 chr3 17930216 17930370 -209594208 + L1MC5 LINE L1 7734 7900 -61 224 236 0 0 chr3 17930896 17930951 -209593627 + (TA)n Simple_repeat Simple_repeat 1 55 0 516 72 0 0 chr3 17930951 17931020 -209593558 + (TG)n Simple_repeat Simple_repeat 2 70 0 574 153 0 0 chr3 17931023 17931108 -209593470 - FRAM SINE Alu -25 151 67 411 188 62 31 chr3 17931115 17931211 -209593367 - MIR SINE MIR -108 154 56 580 229 55 37 chr3 17931802 17932020 -209592558 - AluSq SINE Alu -1 312 91 335 258 121 16 chr3 17933161 17933285 -209591293 + MIR SINE MIR 82 218 -44 275 302 50 115 chr3 17933521 17933842 -209590736 - L2 LINE L2 -32 3240 2941 287 362 121 24 chr3 17933865 17934072 -209590506 + L2 LINE L2 3032 3258 -14 2392 79 3 0 chr3 17934187 17934479 -209590099 - AluSp SINE Alu -20 293 1 210 342 26 0 chr3 17934988 17935064 -209589514 + L2 LINE L2 3162 3239 -33 191 288 108 81 chr3 17935126 17935237 -209589341 + L2 LINE L2 3136 3249 -23 269 366 69 0 chr3 17936321 17936422 -209588156 + MIR SINE MIR 16 123 -85 343 284 64 46 chr3 17936732 17936879 -209587699 + MIR SINE MIR 32 178 -67 342 246 0 88 chr3 17937144 17937258 -209587320 + MIR3 SINE MIR 70 173 -35 372 319 148 14 chr3 17937524 17937734 -209586844 - MIR SINE MIR 0 262 25 376 307 119 11 chr3 17938473 17938649 -209585929 + MIR SINE MIR 34 228 -34 191 275 110 55 chr3 17938714 17938823 -209585755 + MIR SINE MIR 32 146 -116 918 108 39 8 chr3 17938828 17938958 -209585620 + AluJb SINE Alu 163 296 -16 328 302 54 0 chr3 17939118 17939247 -209585331 - MIR SINE MIR -2 260 125 401 304 54 7 chr3 17939944 17940092 -209584486 - MIR SINE MIR -58 204 50 371 341 119 6 chr3 17940327 17940503 -209584075 + MIR SINE MIR 48 243 -19 303 312 37 28 chr3 17940662 17940771 -209583807 + L2 LINE L2 3123 3232 -40 216 273 0 0 chr3 17940773 17940850 -209583728 + GA-rich Low_complexity Low_complexity 4 80 0 325 278 53 20 chr3 17941479 17941630 -209582948 + L2 LINE L2 2814 2969 -303 266 154 58 0 chr3 17941645 17941697 -209582881 - LTR16C LTR ERVL 0 491 437 13185 112 25 15 chr3 17941700 17944139 -209580439 + Tigger1 DNA MER2_type 1 2417 -1 1136 293 42 9 chr3 17944142 17944476 -209580102 - LTR16C LTR ERVL -58 433 89 405 200 70 35 chr3 17944643 17944758 -209579820 + L2 LINE L2 3137 3255 -17 329 294 104 60 chr3 17945357 17946270 -209578308 + L1M4 LINE L1 4370 5322 -824 2052 140 17 70 chr3 17946315 17946734 -209577844 - MER57A LTR ERV1 -1 387 7 629 291 25 0 chr3 17947094 17947290 -209577288 + MIR SINE MIR 40 240 -22 1864 161 13 10 chr3 17948409 17948719 -209575859 - AluJb SINE Alu -1 311 1 1913 174 0 3 chr3 17949019 17949317 -209575261 - AluJb SINE Alu -15 297 1 1335 272 45 19 chr3 17949317 17949578 -209575000 - LTR16B LTR ERVL -6 458 180 769 186 8 0 chr3 17949578 17949702 -209574876 + FLAM_A SINE Alu 1 125 -8 1335 272 45 19 chr3 17949702 17949866 -209574712 - LTR16B LTR ERVL -284 180 22 860 319 92 7 chr3 17949873 17950296 -209574282 - LTR16B LTR ERVL -5 459 1 516 213 74 111 chr3 17950333 17950577 -209574001 + MLT1K LTR MaLR 354 588 0 1925 178 0 0 chr3 17950748 17951051 -209573527 + AluJo SINE Alu 1 303 -9 217 156 125 62 chr3 17951147 17951211 -209573367 + L2 LINE L2 3244 3311 -2 1537 146 47 70 chr3 17951300 17951601 -209572977 + AluJo SINE Alu 18 311 -1 217 319 14 0 chr3 17951885 17951954 -209572624 + L2 LINE L2 3228 3297 -16 607 270 59 28 chr3 17952078 17952321 -209572257 - MIR SINE MIR 0 262 18 348 286 0 0 chr3 17952623 17952714 -209571864 - MIR SINE MIR -71 137 47 249 139 0 0 chr3 17952715 17952758 -209571820 + (T)n Simple_repeat Simple_repeat 1 43 0 205 267 33 67 chr3 17954039 17954129 -209570449 - MIR SINE MIR -81 127 40 387 216 80 74 chr3 17954841 17955017 -209569561 + MIR SINE MIR 37 213 -49 196 326 66 41 chr3 17955729 17955922 -209568656 + L2 LINE L2 2418 2615 -699 530 266 146 13 chr3 17955922 17956080 -209568498 + MER5A DNA MER1_type 4 182 -7 265 156 16 16 chr3 17956096 17956160 -209568418 - MER5A DNA MER1_type -95 94 31 703 292 50 94 chr3 17956467 17956861 -209567717 + LTR67 LTR ERVL 97 468 -89 1950 115 0 14 chr3 17956861 17957139 -209567439 - AluSx SINE Alu -12 300 27 703 292 50 94 chr3 17957139 17957224 -209567354 + LTR67 LTR ERVL 468 555 -2 2008 94 64 0 chr3 17957283 17957587 -209566991 - AluSg SINE Alu 0 321 1 456 302 56 22 chr3 17957600 17957779 -209566799 - MLT1J2 LTR MaLR 0 450 266 1216 307 141 4 chr3 17958093 17958588 -209565990 + MLT1K LTR MaLR 24 586 -2 480 277 31 13 chr3 17958899 17959058 -209565520 + MIR SINE MIR 90 251 -11 526 310 6 6 chr3 17959485 17959656 -209564922 - MIR SINE MIR -72 190 20 445 205 170 0 chr3 17959954 17960066 -209564512 + MIR SINE MIR 14 144 -118 663 236 32 25 chr3 17960069 17960226 -209564352 + MLT1D LTR MaLR 1 158 -347 410 215 0 0 chr3 17960241 17960320 -209564258 - L1M4 LINE L1 -1287 4859 4781 814 106 0 53 chr3 17960330 17960462 -209564116 - L1MB7 LINE L1 -16 6168 6044 503 254 9 0 chr3 17960552 17960662 -209563916 - MER81 DNA DNA 0 114 4 860 230 84 59 chr3 17960703 17960851 -209563727 + LTR16C LTR ERVL 69 212 -279 2243 42 0 4 chr3 17960851 17961113 -209563465 - AluY SINE Alu -19 292 32 860 230 84 59 chr3 17961113 17961286 -209563292 + LTR16C LTR ERVL 212 398 -93 639 250 17 56 chr3 17961909 17961967 -209562611 + MLT1G1 LTR MaLR 1 60 -535 2023 133 10 0 chr3 17961967 17962268 -209562310 - AluSg SINE Alu -6 304 1 639 250 17 56 chr3 17962268 17962389 -209562189 + MLT1G1 LTR MaLR 60 173 -422 482 180 41 97 chr3 17962384 17962593 -209561985 + MLT1G LTR MaLR 288 584 -6 * 181 273 18 18 chr3 17962835 17962890 -209561688 + MIR SINE MIR 21 75 -133 277 195 244 0 chr3 17962922 17963004 -209561574 + MIR SINE MIR 63 164 -98 365 190 13 13 chr3 17963108 17963187 -209561391 + MIR SINE MIR 36 114 -94 740 266 5 37 chr3 17963484 17963702 -209560876 + MIR SINE MIR 1 211 -51 1571 213 32 52 chr3 17963867 17964309 -209560269 - MER113 DNA MER1_type? -88 433 1 376 356 17 6 chr3 17964522 17964696 -209559882 + L1ME4a LINE L1 5623 5798 -323 865 263 38 0 chr3 17964720 17964933 -209559645 - MIR SINE MIR -34 228 8 1549 128 120 8 chr3 17964975 17965233 -209559345 - AluJo SINE Alu -25 287 1 400 246 113 0 chr3 17965290 17965432 -209559146 + L1ME4a LINE L1 5961 6118 -3 185 121 0 0 chr3 17965532 17965565 -209559013 - MIR SINE MIR -1 261 229 298 281 9 88 chr3 17965607 17965721 -209558857 + MER91C DNA MER1_type 1 105 -35 635 258 26 0 chr3 17965736 17965891 -209558687 - MIR SINE MIR -85 177 19 671 300 6 0 chr3 17965984 17966164 -209558414 + MIR3 SINE MIR 19 199 -9 230 254 18 0 chr3 17966565 17966620 -209557958 + L1MC/D LINE L1 5852 5907 -1901 1187 200 0 0 chr3 17966802 17967041 -209557537 - AluJb SINE Alu 0 311 73 862 115 0 43 chr3 17967061 17967200 -209557378 + FLAM_C SINE Alu 1 133 0 2056 145 57 8 chr3 17967238 17967542 -209557036 - MLT1B LTR MaLR 0 390 63 2527 70 0 0 chr3 17967542 17967840 -209556738 - AluSg SINE Alu -1 309 12 2056 145 57 8 chr3 17967840 17967907 -209556671 - MLT1B LTR MaLR -327 63 1 305 317 150 6 chr3 17968134 17968301 -209556277 + MIR SINE MIR 56 246 -16 2671 176 52 2 chr3 17968693 17968732 -209555846 - MLT2B1 LTR ERVL 0 520 484 455 33 16 0 chr3 17968732 17968793 -209555785 + (TAGA)n Simple_repeat Simple_repeat 3 64 0 2671 176 52 2 chr3 17968793 17969248 -209555330 - MLT2B1 LTR ERVL -36 484 1 925 293 53 18 chr3 17969248 17969495 -209555083 + MLT1K LTR MaLR 36 273 -315 2067 127 0 29 chr3 17969495 17969811 -209554767 + AluSx SINE Alu 1 307 -5 925 293 53 18 chr3 17969811 17969979 -209554599 + MLT1K LTR MaLR 273 516 -72 390 293 99 31 chr3 17970024 17970215 -209554363 - MER63A DNA MER1_type -4 206 3 1904 165 6 19 chr3 17970268 17970584 -209553994 + AluJo SINE Alu 1 312 0 244 359 119 6 chr3 17970652 17970811 -209553767 - MIR SINE MIR -52 210 34 2219 91 3 41 chr3 17971218 17971536 -209553042 + AluSx SINE Alu 1 306 -6 489 278 182 12 chr3 17971558 17971856 -209552722 + MLT1L LTR MaLR 142 544 -19 336 294 16 8 chr3 17971887 17972013 -209552565 + L1ME LINE L1 5693 5819 -302 1174 170 67 13 chr3 17972159 17972383 -209552195 + MER46A DNA MER2_type 1 236 0 2033 111 17 7 chr3 17972690 17972973 -209551605 + AluJb SINE Alu 1 287 -21 180 0 0 0 chr3 17972973 17972993 -209551585 + (CAAT)n Simple_repeat Simple_repeat 1 20 0 541 240 194 34 chr3 17974070 17974395 -209550183 - MLT1J LTR MaLR -25 486 110 1683 189 10 7 chr3 17974487 17974788 -209549790 - AluJo SINE Alu -6 306 5 753 193 6 88 chr3 17974812 17974993 -209549585 - FRAM SINE Alu -18 158 1 221 291 87 0 chr3 17975117 17975220 -209549358 - MIR SINE MIR -61 147 36 335 374 26 5 chr3 17975529 17975724 -209548854 + MIR SINE MIR 47 245 -17 669 182 97 0 chr3 17975988 17976153 -209548425 + MIR SINE MIR 51 231 -31 183 341 24 12 chr3 17976212 17976297 -209548281 - MIR SINE MIR -165 97 12 654 272 148 40 chr3 17976542 17976921 -209547657 - MLT1J LTR MaLR -78 433 14 743 202 0 0 chr3 17976961 17977080 -209547498 + FLAM_A SINE Alu 1 119 -14 21 57 0 0 chr3 17977081 17977116 -209547462 + AT_rich Low_complexity Low_complexity 1 35 0 1809 167 3 7 chr3 17977300 17977605 -209546973 - AluJb SINE Alu -8 304 1 433 261 82 39 chr3 17977875 17978082 -209546496 + MLT1J2 LTR MaLR 20 235 -215 2411 158 29 7 chr3 17978202 17978658 -209545920 + L1MB7 LINE L1 5709 6174 -10 259 275 0 55 chr3 17978682 17978773 -209545805 + MLT1I LTR MaLR 323 408 -1 213 132 0 0 chr3 17978939 17978977 -209545601 + (TGGA)n Simple_repeat Simple_repeat 4 41 0 2240 140 85 18 chr3 17979126 17979527 -209545051 - MSTA LTR MaLR 0 428 1 586 262 36 86 chr3 17979741 17980077 -209544501 + L2 LINE L2 2949 3267 -5 385 291 157 0 chr3 17980194 17980328 -209544250 + MIR SINE MIR 13 167 -95 330 254 28 57 chr3 17980458 17980635 -209543943 - MER5A DNA MER1_type 0 189 18 181 267 0 0 chr3 17980626 17980671 -209543907 - MIR SINE MIR -101 161 117 * 393 228 0 0 chr3 17980724 17980816 -209543762 - MER5A DNA MER1_type -83 106 15 565 211 113 0 chr3 17980866 17981008 -209543570 - MER5B DNA MER1_type -20 158 1 2195 83 0 0 chr3 17981202 17981492 -209543086 + AluSc SINE Alu 15 304 0 427 251 89 45 chr3 17982038 17982217 -209542361 - MIR SINE MIR -27 235 49 2226 130 3 0 chr3 17983319 17983635 -209540943 + 7SLRNA srpRNA srpRNA 1 317 -3 953 261 17 0 chr3 17983785 17984023 -209540555 - MIR SINE MIR 0 262 21 659 203 68 21 chr3 17984041 17984233 -209540345 - L1ME3A LINE L1 -5 6165 5965 807 159 22 7 chr3 17984238 17984376 -209540202 - FRAM SINE Alu -24 152 13 2191 252 114 27 chr3 17984410 17985131 -209539447 - L1ME3A LINE L1 -225 5945 5288 1087 167 22 44 chr3 17985131 17985358 -209539220 - L1MB8 LINE L1 0 6178 5957 2191 252 114 27 chr3 17985358 17986281 -209538297 - L1ME3A LINE L1 -882 5288 4146 245 246 14 14 chr3 17986535 17986604 -209537974 - MLT1J LTR MaLR -214 297 229 278 219 55 0 chr3 17986719 17986792 -209537786 - MLT1L LTR MaLR -538 77 1 332 344 7 19 chr3 17987363 17987517 -209537061 + MIR3 SINE MIR 33 184 -24 180 0 0 0 chr3 17987629 17987649 -209536929 + (CCCCCA)n Simple_repeat Simple_repeat 3 22 0 549 117 146 7 chr3 17988643 17988780 -209535798 - MER5C DNA MER1_type -71 253 98 6456 32 4 0 chr3 17988782 17989768 -209534810 + L1PA5 LINE L1 5020 6009 -145 7344 47 4 3 chr3 17990895 17992357 -209532221 + L1PA6 LINE L1 4689 6153 -1 202 234 0 0 chr3 17992623 17992670 -209531908 + A-rich Low_complexity Low_complexity 1 47 0 365 115 0 0 chr3 17993100 17993152 -209531426 - AluSx SINE Alu -8 292 241 1155 99 6 25 chr3 17993152 17993313 -209531265 - AluSx SINE Alu -154 158 1 1651 124 0 70 chr3 17994660 17994933 -209529645 - AluSx SINE Alu -58 254 1 419 221 88 51 chr3 17994975 17995152 -209529426 - L1ME1 LINE L1 -5 6161 5907 30 69 0 0 chr3 17995156 17995214 -209529364 + AT_rich Low_complexity Low_complexity 1 58 0 369 62 0 0 chr3 17995253 17995301 -209529277 + (TG)n Simple_repeat Simple_repeat 1 48 0 276 183 9 104 chr3 17995329 17995444 -209529134 + L1ME1 LINE L1 1254 1357 -5069 542 227 13 47 chr3 17995451 17995601 -209528977 + L1ME1 LINE L1 1469 1613 -4813 538 229 6 45 chr3 17995588 17995767 -209528811 + L1ME1 LINE L1 4756 4927 -1499 * 757 189 0 0 chr3 17995791 17995923 -209528655 + FRAM SINE Alu 40 171 -5 3277 214 32 61 chr3 17995949 17997024 -209527554 + L1ME1 LINE L1 4931 6035 -411 2304 107 10 0 chr3 17997024 17997324 -209527254 + AluSg SINE Alu 1 303 -7 1946 105 27 90 chr3 17997330 17997663 -209526915 + AluSx SINE Alu 1 312 0 3277 214 32 61 chr3 17997663 17998109 -209526469 + L1ME1 LINE L1 6040 6421 -25 1259 238 143 46 chr3 17998202 17998614 -209525964 - MER21B LTR ERV1 -82 781 330 6897 133 12 22 chr3 17998681 17998814 -209525764 + LTR49-int LTR ERV1 4159 4292 -2039 2015 125 50 0 chr3 17998814 17999111 -209525467 + AluSx SINE Alu 1 312 0 6897 133 12 22 chr3 17999111 17999995 -209524583 + LTR49-int LTR ERV1 4292 5166 -1165 1589 179 20 13 chr3 17999995 18000296 -209524282 + AluJo SINE Alu 1 303 -9 6897 133 12 22 chr3 18000296 18000428 -209524150 + LTR49-int LTR ERV1 5166 5298 -1033 2499 108 113 17 chr3 18000437 18000846 -209523732 - MER83 LTR ERV1 0 448 1 564 246 15 0 chr3 18001257 18001391 -209523187 - MER103 DNA DNA -20 146 11 572 264 74 0 chr3 18001663 18001826 -209522752 - MIR SINE MIR -67 195 21 248 313 15 0 chr3 18002014 18002081 -209522497 + L2 LINE L2 2986 3053 -219 216 315 55 14 chr3 18002221 18002294 -209522284 - L2 LINE L2 -38 3234 3159 327 348 43 7 chr3 18002544 18002685 -209521893 + MIR SINE MIR 67 212 -50 794 241 30 5 chr3 18002780 18002983 -209521595 - MIR SINE MIR -12 250 43 2080 147 3 6 chr3 18003034 18003347 -209521231 + AluJb SINE Alu 1 312 0 263 28 28 0 chr3 18003350 18003386 -209521192 + (GAAAA)n Simple_repeat Simple_repeat 4 40 0 642 267 143 5 chr3 18004197 18004407 -209520171 + L1ME4a LINE L1 5533 5771 -2037 2228 92 0 3 chr3 18004414 18004741 -209519837 + AluSx SINE Alu 19 344 0 334 257 97 38 chr3 18004773 18005010 -209519568 + L1ME4a LINE L1 5767 6017 -104 533 256 46 72 chr3 18005427 18005626 -209518952 + MIR SINE MIR 8 200 -62 1571 118 184 8 chr3 18005626 18005881 -209518697 + AluSg1 SINE Alu 3 302 -7 533 256 46 72 chr3 18005881 18005943 -209518635 + MIR SINE MIR 200 262 0 290 295 74 8 chr3 18006454 18006576 -209518002 + MIR SINE MIR 18 147 -61 491 244 35 0 chr3 18007081 18007196 -209517382 + L1MB5 LINE L1 6056 6174 0 785 193 0 30 chr3 18008149 18008315 -209516263 - MER5B DNA MER1_type -15 163 3 682 223 101 45 chr3 18009710 18009957 -209514621 + MIR SINE MIR 2 262 0 2131 81 74 0 chr3 18010607 18010890 -209513688 - AluSq SINE Alu -9 304 1 751 207 17 35 chr3 18010920 18011094 -209513484 - MER5A DNA MER1_type -1 188 18 311 209 3 171 chr3 18011561 18011627 -209512951 - MER5A DNA MER1_type -62 116 41 1840 151 45 3 chr3 18011627 18011918 -209512660 - AluJb SINE Alu -5 307 5 311 209 3 171 chr3 18011918 18011932 -209512646 - MER5A DNA MER1_type -137 41 26 2229 66 7 24 chr3 18011932 18012221 -209512357 - AluSq SINE Alu -13 300 17 311 209 3 171 chr3 18012221 18012284 -209512294 - MER5A DNA MER1_type -152 26 10 312 229 12 24 chr3 18012296 18012379 -209512199 + MER117 DNA MER1_type 61 142 -55 381 246 167 9 chr3 18012432 18012546 -209512032 - MIR SINE MIR -61 147 16 2170 145 0 0 chr3 18012963 18013267 -209511311 + AluJb SINE Alu 3 306 -6 351 285 62 42 chr3 18013446 18013590 -209510988 + MIR3 SINE MIR 21 167 -41 260 200 123 0 chr3 18013588 18013653 -209510925 - MER5C DNA MER1_type -5 319 247 * 2197 180 39 142 chr3 18013719 18013806 -209510772 - LTR8A LTR ERV1 0 727 633 2167 120 0 7 chr3 18013806 18014105 -209510473 + AluSx SINE Alu 1 297 -15 2197 180 39 142 chr3 18014105 18014791 -209509787 - LTR8A LTR ERV1 -94 633 34 2416 209 82 43 chr3 18015430 18015824 -209508754 + MER21B LTR ERV1 98 532 -331 1960 140 0 13 chr3 18015824 18016131 -209508447 + AluSx SINE Alu 1 303 -9 2416 209 82 43 chr3 18016131 18016415 -209508163 + MER21B LTR ERV1 532 803 -60 475 214 58 0 chr3 18017287 18017390 -209507188 + L1ME3 LINE L1 6053 6161 -1 2230 117 0 0 chr3 18017579 18017879 -209506699 + AluSx SINE Alu 1 300 -12 309 356 52 30 chr3 18017888 18018023 -209506555 + MIR3 SINE MIR 10 147 -61 2015 131 20 23 chr3 18018052 18018358 -209506220 + AluSx SINE Alu 1 305 -7 264 300 50 17 chr3 18018422 18018542 -209506036 + MIR SINE MIR 50 173 -89 181 250 0 0 chr3 18018546 18018586 -209505992 + L2 LINE L2 3222 3261 -11 2139 104 3 7 chr3 18019355 18019642 -209504936 + AluSx SINE Alu 1 286 -26 1794 169 23 10 chr3 18020081 18020382 -209504196 - AluJb SINE Alu -7 305 1 603 100 45 27 chr3 18020384 18020494 -209504084 - L1MB8 LINE L1 0 6178 6067 198 214 0 24 chr3 18020560 18020602 -209503976 + MIR SINE MIR 32 72 -136 232 315 62 15 chr3 18021637 18021767 -209502811 + MIR SINE MIR 17 152 -56 830 246 57 36 chr3 18021800 18022134 -209502444 + MER2 DNA MER2_type 3 343 -1 269 250 156 0 chr3 18022942 18023006 -209501572 + L1ME LINE L1 5539 5612 -552 647 264 86 0 chr3 18023011 18023185 -209501393 + MER5A DNA MER1_type 1 189 0 381 269 169 0 chr3 18023250 18023394 -209501184 - MIR SINE MIR -56 206 38 1416 168 53 76 chr3 18023446 18023750 -209500828 - AluJb SINE Alu -15 297 1 243 275 113 4 chr3 18023904 18023998 -209500580 - MIR SINE MIR -102 106 6 24 0 0 0 chr3 18024158 18024182 -209500396 + AT_rich Low_complexity Low_complexity 1 24 0 773 152 9 119 chr3 18024855 18024984 -209499594 - L1MC4 LINE L1 0 8042 7943 872 180 37 37 chr3 18024984 18025173 -209499405 - MER5A DNA MER1_type 0 189 1 773 152 9 119 chr3 18025173 18025253 -209499325 - L1MC4 LINE L1 -99 7943 7856 29 0 0 0 chr3 18026643 18026672 -209497906 + AT_rich Low_complexity Low_complexity 1 29 0 189 147 0 0 chr3 18026687 18026721 -209497857 + (T)n Simple_repeat Simple_repeat 1 34 0 2038 132 19 16 chr3 18026739 18027050 -209497528 + AluSx SINE Alu 1 312 0 602 240 34 29 chr3 18027424 18027599 -209496979 - MIR SINE MIR -21 241 66 186 198 134 134 chr3 18027692 18027789 -209496789 + MIR SINE MIR 106 205 -57 1939 143 17 0 chr3 18027789 18028090 -209496488 - AluJo SINE Alu -6 306 1 186 198 134 134 chr3 18028090 18028149 -209496429 + MIR SINE MIR 204 262 0 225 147 0 0 chr3 18028428 18028462 -209496116 + Alu SINE Alu 2 35 -98 585 77 0 44 chr3 18028462 18028553 -209496025 + AluJo/FRAM SINE Alu 213 299 -13 563 234 6 35 chr3 18029111 18029282 -209495296 - MIR SINE MIR -91 171 6 357 249 126 61 chr3 18029398 18029659 -209494919 + L2 LINE L2 3032 3309 -4 1122 118 0 0 chr3 18029748 18029892 -209494686 + AluSq/x SINE Alu 1 144 -169 574 127 0 0 chr3 18029892 18029971 -209494607 + AluSc SINE Alu 210 288 -21 1246 123 0 0 chr3 18029971 18030142 -209494436 + AluSx SINE Alu 119 289 -21 367 191 0 0 chr3 18030142 18030210 -209494368 + L1M4 LINE L1 5225 5292 -854 2121 128 3 3 chr3 18030215 18030513 -209494065 + AluSx SINE Alu 1 298 -14 1168 125 0 28 chr3 18030513 18030689 -209493889 + AluSg/x SINE Alu 135 305 -5 3374 156 46 50 chr3 18030697 18030786 -209493792 + L1MB8 LINE L1 5209 5297 -881 2383 99 0 3 chr3 18030786 18031088 -209493490 + AluSx SINE Alu 1 301 -11 3374 156 46 50 chr3 18031088 18031761 -209492817 + L1MB8 LINE L1 5297 5972 -206 719 220 10 25 chr3 18031858 18032058 -209492520 + L1MB8 LINE L1 5980 6176 -2 1813 159 107 3 chr3 18032185 18032512 -209492066 - MER46B DNA MER2_type 0 236 1 219 242 48 16 chr3 18032513 18032575 -209492003 + L2 LINE L2 3204 3267 -5 3207 115 36 6 chr3 18032763 18033233 -209491345 + MER1A DNA MER1_type 46 529 0 225 265 133 0 chr3 18033236 18033334 -209491244 - MIR SINE MIR -67 195 85 252 296 37 37 chr3 18033762 18033870 -209490708 - L2 LINE L2 -4 3268 3161 343 266 97 0 chr3 18034367 18034480 -209490098 + MIR SINE MIR 87 210 -52 818 153 0 0 chr3 18034611 18034729 -209489849 - FLAM_C SINE Alu -25 118 1 274 270 93 2 chr3 18034820 18034937 -209489641 - L1ME LINE L1 -376 5786 5660 414 310 44 0 chr3 18034937 18035095 -209489483 + MIR SINE MIR 88 252 -10 293 321 0 0 chr3 18035174 18035258 -209489320 - L1ME LINE L1 -547 5574 5491 2488 63 0 7 chr3 18035428 18035727 -209488851 - AluY SINE Alu -14 297 1 584 153 127 0 chr3 18035970 18036088 -209488490 - MER94 DNA DNA -1 133 1 1823 145 3 39 chr3 18037550 18037860 -209486718 - AluJb SINE Alu -13 299 1 2017 239 75 76 chr3 18038368 18039299 -209485279 - HAL1 LINE L1 -17 2490 1561 553 239 49 74 chr3 18039316 18039351 -209485227 - HAL1 LINE L1 -1126 1381 1347 1761 177 13 10 chr3 18039351 18039661 -209484917 - AluJb SINE Alu -1 311 1 553 239 49 74 chr3 18039661 18040113 -209484465 - HAL1 LINE L1 -1160 1347 853 952 205 0 0 chr3 18040161 18040322 -209484256 - AluJo SINE Alu -27 285 125 252 0 0 0 chr3 18040322 18040350 -209484228 + (TG)n Simple_repeat Simple_repeat 2 29 0 230 196 0 0 chr3 18040350 18040396 -209484182 + L1MC4 LINE L1 6658 6703 -1339 288 186 0 0 chr3 18040819 18040878 -209483700 + (TG)n Simple_repeat Simple_repeat 1 59 0 316 279 23 0 chr3 18040878 18040964 -209483614 - L1MC4 LINE L1 -1340 6702 6615 301 299 23 0 chr3 18040887 18040974 -209483604 + L1MC4 LINE L1 6614 6702 -1340 * 282 56 0 0 chr3 18040974 18041010 -209483568 + (CA)n Simple_repeat Simple_repeat 1 36 0 874 109 0 8 chr3 18041043 18041171 -209483407 - AluJo SINE Alu -174 128 2 525 233 108 124 chr3 18041183 18041287 -209483291 - HAL1 LINE L1 -1679 828 724 2275 128 0 0 chr3 18041287 18041591 -209482987 - AluSx SINE Alu -8 304 1 525 233 108 124 chr3 18041591 18041744 -209482834 - HAL1 LINE L1 -1783 724 575 200 308 0 46 chr3 18041756 18041821 -209482757 + L2 LINE L2 2766 2827 -487 784 361 15 3 chr3 18042100 18042435 -209482143 - ERVL LTR ERVL -698 5066 4728 275 257 31 2 chr3 18042519 18042627 -209481951 - ERVL LTR ERVL -2658 2338 2227 2205 109 0 0 chr3 18042627 18042912 -209481666 + AluSx SINE Alu 17 301 -11 797 182 223 8 chr3 18042916 18043026 -209481552 - L1MB7 LINE L1 -13 6171 6062 292 238 98 24 chr3 18043026 18043190 -209481388 - L1MC4 LINE L1 -2023 6019 5844 1315 226 7 36 chr3 18043751 18044057 -209480521 - AluJb SINE Alu -5 297 1 22 35 0 0 chr3 18044071 18044100 -209480478 + AT_rich Low_complexity Low_complexity 1 29 0 223 234 21 0 chr3 18044368 18044415 -209480163 + MIR SINE MIR 32 79 -129 1620 165 24 3 chr3 18045818 18046115 -209478463 + AluJo SINE Alu 1 303 -9 229 209 23 0 chr3 18046246 18046289 -209478289 - L2 LINE L2 -5 3267 3224 240 314 94 19 chr3 18046652 18046811 -209477767 - MIR3 SINE MIR -37 171 1 701 295 43 14 chr3 18047318 18047599 -209476979 - HAL1 LINE L1 -69 2438 2150 2385 217 72 40 chr3 18047656 18048448 -209476130 - HAL1 LINE L1 -701 1806 990 323 299 0 0 chr3 18048455 18048542 -209476036 - L1MC4 LINE L1 -592 5570 5484 319 344 100 28 chr3 18048567 18048639 -209475939 - L2 LINE L2 -5 3267 3202 2582 106 22 6 chr3 18048639 18048997 -209475581 - THE1B LTR MaLR 0 364 1 319 344 100 28 chr3 18048997 18049104 -209475474 - L2 LINE L2 -70 3202 3075 884 143 0 15 chr3 18049267 18049400 -209475178 + AluJo/FLAM SINE Alu 1 131 -171 1636 117 133 11 chr3 18049402 18049537 -209475041 + AluJb SINE Alu 1 118 -184 1997 121 20 3 chr3 18049537 18049842 -209474736 + AluSx SINE Alu 1 310 -2 1636 117 133 11 chr3 18049842 18049970 -209474608 + AluJb SINE Alu 118 296 -6 913 184 32 50 chr3 18050284 18050566 -209474012 + L1MC5 LINE L1 7641 7917 -44 3592 126 41 48 chr3 18050760 18051445 -209473133 - L1PB4 LINE L1 -1 6155 5476 786 125 0 59 chr3 18051445 18051571 -209473007 - AluSg/x SINE Alu -26 284 165 1893 138 14 0 chr3 18051571 18051847 -209472731 - AluSx SINE Alu -30 282 3 4926 197 24 121 chr3 18051849 18052601 -209471977 - L1 LINE L1 -2218 4570 3747 1582 204 17 13 chr3 18052601 18052900 -209471678 - AluJb SINE Alu -2 300 1 4926 197 24 121 chr3 18052900 18053213 -209471365 - L1 LINE L1 -3041 3747 3405 1478 155 54 32 chr3 18053213 18053490 -209471088 + AluJo SINE Alu 1 283 -29 4926 197 24 121 chr3 18053490 18053719 -209470859 - L1 LINE L1 -3383 3405 3156 1228 167 0 39 chr3 18053719 18053952 -209470626 - AluJo SINE Alu -2 310 87 4926 197 24 121 chr3 18053952 18055238 -209469340 - L1 LINE L1 -3632 3156 2042 352 282 201 7 chr3 18055398 18055547 -209469031 + MIR SINE MIR 7 184 -78 972 188 5 48 chr3 18055697 18055905 -209468673 - AluJo SINE Alu -113 199 1 6027 109 25 11 chr3 18056165 18058071 -209466507 - L1PA13 LINE L1 0 6163 4247 269 265 15 0 chr3 18058464 18058532 -209466046 + MIR SINE MIR 124 192 -70 363 333 207 14 chr3 18059125 18059560 -209465018 - L2 LINE L2 -447 2867 2349 1700 136 49 7 chr3 18060402 18060689 -209463889 + AluJo SINE Alu 3 301 -11 497 265 26 0 chr3 18060729 18060846 -209463732 + L2 LINE L2 3151 3270 -2 2510 243 96 25 chr3 18060893 18061753 -209462825 - L1ME3A LINE L1 -25 6145 5197 2064 106 0 3 chr3 18061753 18062046 -209462532 - AluSc SINE Alu -5 304 13 2510 243 96 25 chr3 18062046 18062203 -209462375 - L1ME3A LINE L1 -973 5197 5053 601 159 138 43 chr3 18062412 18062550 -209462028 - MIR3 SINE MIR -39 169 19 414 292 35 0 chr3 18063563 18063676 -209460902 - L2 LINE L2 -6 3266 3150 261 250 61 122 chr3 18064961 18065273 -209459305 - MLT1K LTR MaLR -161 427 135 515 355 87 0 chr3 18065576 18065807 -209458771 + MIR SINE MIR 6 256 -6 2295 102 0 3 chr3 18065870 18066184 -209458394 - AluSq SINE Alu 0 313 1 1366 172 42 19 chr3 18066249 18066510 -209458068 + AluJo SINE Alu 1 267 -45 309 311 30 15 chr3 18066683 18066815 -209457763 - MIR3 SINE MIR -64 144 11 494 293 96 0 chr3 18067004 18067192 -209457386 + MIR SINE MIR 26 231 -31 454 221 26 0 chr3 18067255 18067368 -209457210 - LTR33A LTR ERVL 0 523 408 970 257 135 80 chr3 18067493 18067883 -209456695 + MLT1F1 LTR MaLR 1 447 -102 1446 142 42 12 chr3 18067946 18068186 -209456392 + AluJo SINE Alu 3 249 -63 2128 104 0 0 chr3 18068235 18068515 -209456063 + AluSg SINE Alu 1 280 -30 270 0 0 0 chr3 18068521 18068551 -209456027 + (TAA)n Simple_repeat Simple_repeat 1 30 0 225 0 0 0 chr3 18068554 18068579 -209455999 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 279 167 4 0 chr3 18068721 18068777 -209455801 + FLAM SINE Alu 84 132 -1 1603 167 0 14 chr3 18068919 18069212 -209455366 + AluJb SINE Alu 1 289 -23 2109 97 0 0 chr3 18069214 18069518 -209455060 + AluSc SINE Alu 1 304 0 255 267 86 48 chr3 18069613 18069718 -209454860 - LTR50 LTR ERVL -648 147 39 1209 103 0 16 chr3 18069865 18070050 -209454528 + AluSg/x SINE Alu 131 312 0 2087 104 3 16 chr3 18070309 18070617 -209453961 - AluSx SINE Alu 0 312 9 519 261 73 0 chr3 18070660 18070825 -209453753 - ERVL LTR ERVL -438 5326 5150 949 193 90 30 chr3 18070843 18071076 -209453502 - MIR SINE MIR -3 259 13 188 270 0 0 chr3 18071123 18071160 -209453418 + MIR SINE MIR 226 262 0 1940 156 0 3 chr3 18072266 18072574 -209452004 - AluJb SINE Alu -5 307 1 409 257 105 20 chr3 18072895 18073047 -209451531 - MIR3 SINE MIR -2 206 42 2040 123 0 0 chr3 18073052 18073385 -209451193 - AluSx SINE Alu 0 333 1 735 235 150 5 chr3 18074155 18074368 -209450210 - MIR SINE MIR -18 244 1 987 344 128 23 chr3 18074407 18075283 -209449295 - L2 LINE L2 -237 3035 2060 1087 176 45 9 chr3 18075308 18075529 -209449049 + MSTB1 LTR MaLR 4 232 -200 * 2055 150 63 11 chr3 18075528 18075894 -209448684 - MSTB1 LTR MaLR -47 385 1 961 160 94 1 chr3 18075898 18076169 -209448409 + L1MB7 LINE L1 5178 5484 -696 489 232 36 43 chr3 18076215 18076353 -209448225 + L1MB7 LINE L1 5476 5612 -566 1370 142 29 16 chr3 18076355 18076601 -209447977 + AluJo SINE Alu 40 288 -24 547 103 0 23 chr3 18076609 18076696 -209447882 + L1MB7 LINE L1 5601 5685 -493 1477 198 28 65 chr3 18076698 18077030 -209447548 + L1MB7 LINE L1 5791 6107 -77 2145 112 0 0 chr3 18077030 18077326 -209447252 - AluSx SINE Alu -16 296 1 1477 198 28 65 chr3 18077326 18077393 -209447185 + L1MB7 LINE L1 6107 6175 -9 2652 151 64 4 chr3 18077548 18078033 -209446545 - L1MA9 LINE L1 -1 6311 5798 320 212 0 15 chr3 18078038 18078104 -209446474 - Tigger5 DNA MER2_type -5 2318 2254 1496 163 15 15 chr3 18078122 18078386 -209446192 - MER7A DNA MER2_type 0 346 83 724 222 0 0 chr3 18078386 18078512 -209446066 + FLAM_A SINE Alu 1 126 -7 2417 50 0 17 chr3 18078520 18078821 -209445757 + AluY SINE Alu 1 296 -15 21 0 0 0 chr3 18078821 18078842 -209445736 + AT_rich Low_complexity Low_complexity 1 21 0 509 193 37 37 chr3 18078963 18079072 -209445506 - MER7A DNA MER2_type -239 107 1 497 161 5 4 chr3 18079074 18079175 -209445403 - L1P5 LINE L1 -360 5791 5697 1574 155 71 76 chr3 18079594 18079671 -209444907 + MLT1A1 LTR MaLR 1 77 -288 2193 81 7 3 chr3 18079671 18079969 -209444609 + AluSg SINE Alu 1 299 -11 1574 155 71 76 chr3 18079969 18080258 -209444320 + MLT1A1 LTR MaLR 77 365 0 2232 97 7 0 chr3 18080723 18081033 -209443545 - AluSx SINE Alu 0 312 1 784 154 0 0 chr3 18081321 18081438 -209443140 + FLAM_C SINE Alu 2 118 -25 29 0 0 0 chr3 18081438 18081467 -209443111 + AT_rich Low_complexity Low_complexity 1 29 0 473 297 57 31 chr3 18081555 18081584 -209442994 + MIR SINE MIR 28 55 -207 2057 139 0 0 chr3 18081584 18081887 -209442691 + AluSx SINE Alu 1 303 -9 473 297 57 31 chr3 18081887 18082049 -209442529 + MIR SINE MIR 55 224 -38 2526 161 117 13 chr3 18082070 18082460 -209442118 + L1PB4 LINE L1 5550 6013 -143 2077 106 0 34 chr3 18082460 18082781 -209441797 + AluY SINE Alu 1 310 -1 2526 161 117 13 chr3 18082781 18082931 -209441647 + L1PB4 LINE L1 6013 6146 -10 24 0 0 0 chr3 18082932 18082956 -209441622 + AT_rich Low_complexity Low_complexity 1 24 0 2332 61 0 3 chr3 18082958 18083251 -209441327 + AluSq SINE Alu 1 292 -21 327 167 0 30 chr3 18083276 18083342 -209441236 + Alu SINE Alu 231 294 -6 187 263 102 68 chr3 18083362 18083480 -209441098 - MIR SINE MIR -71 137 16 767 233 15 68 chr3 18085176 18085382 -209439196 + MER58A DNA MER1_type 2 196 -28 180 0 0 0 chr3 18085465 18085485 -209439093 + (A)n Simple_repeat Simple_repeat 1 20 0 1609 122 4 4 chr3 18085489 18085726 -209438852 + AluSx SINE Alu 39 275 -37 294 345 105 34 chr3 18085771 18086096 -209438482 + L2 LINE L2 2839 3186 -86 1658 181 3 3 chr3 18086403 18086702 -209437876 + AluJb SINE Alu 1 299 -13 1196 180 23 126 chr3 18086708 18086918 -209437660 + L1M4 LINE L1 5344 5469 -715 2208 88 3 0 chr3 18086918 18087214 -209437364 + AluSg SINE Alu 1 297 -13 1196 180 23 126 chr3 18087214 18087460 -209437118 + L1M4 LINE L1 5469 5739 -445 2160 106 0 0 chr3 18087472 18087765 -209436813 + AluSx SINE Alu 1 293 -19 918 131 0 38 chr3 18087803 18087963 -209436615 + L1MD1 LINE L1 6089 6242 0 1509 179 10 13 chr3 18087972 18088273 -209436305 + AluJo SINE Alu 1 300 -12 37 0 0 0 chr3 18088287 18088324 -209436254 + AT_rich Low_complexity Low_complexity 1 37 0 1654 167 6 16 chr3 18088373 18088684 -209435894 + AluJb SINE Alu 1 308 -4 2101 118 3 0 chr3 18088840 18089137 -209435441 + AluSx SINE Alu 1 298 -14 602 273 34 50 chr3 18089300 18089538 -209435040 + MIR SINE MIR 28 261 -1 2473 58 0 0 chr3 18090049 18090357 -209434221 + AluY SINE Alu 1 308 -3 1882 129 26 7 chr3 18090547 18090850 -209433728 + AluJb SINE Alu 3 311 -1 487 277 31 25 chr3 18091028 18091187 -209433391 + MIR SINE MIR 48 207 -55 1741 149 7 10 chr3 18091399 18091694 -209432884 + AluJb SINE Alu 1 294 -18 1752 115 80 3 chr3 18091777 18092063 -209432515 - AluSq SINE Alu -5 308 1 232 324 0 0 chr3 18092289 18092357 -209432221 - L2 LINE L2 -1 3271 3204 261 129 129 48 chr3 18092389 18092451 -209432127 + MIR SINE MIR 9 75 -187 2367 88 0 0 chr3 18092866 18093174 -209431404 - AluSx SINE Alu -2 310 3 2323 64 7 7 chr3 18093659 18093954 -209430624 - AluY SINE Alu -14 297 3 840 187 59 73 chr3 18095032 18095087 -209429491 + L1M4 LINE L1 5390 5444 -740 1806 174 26 13 chr3 18095087 18095391 -209429187 + AluJo SINE Alu 4 311 -1 840 187 59 73 chr3 18095391 18095624 -209428954 + L1M4 LINE L1 5444 5674 -510 389 183 39 12 chr3 18095924 18096010 -209428568 - AluS SINE Alu -228 74 1 1955 150 27 0 chr3 18096036 18096330 -209428248 + AluJo SINE Alu 9 310 -2 814 233 8 25 chr3 18096344 18096584 -209427994 + L1M4 LINE L1 4235 4470 -1676 3956 236 49 24 chr3 18096608 18097198 -209427380 + L1MCb LINE L1 7 580 -5685 2192 107 21 0 chr3 18097198 18097489 -209427089 + AluY SINE Alu 3 299 -12 3956 236 49 24 chr3 18097489 18098270 -209426308 + L1MCb LINE L1 580 1414 -4851 2397 105 3 0 chr3 18098406 18098710 -209425868 + AluSp SINE Alu 1 305 -8 398 264 107 6 chr3 18098747 18098925 -209425653 - L1MC4a LINE L1 -1907 5901 5706 5501 53 33 116 chr3 18099696 18100596 -209423982 - LTR12 LTR ERV1 0 826 1 2012 143 78 104 chr3 18100618 18101129 -209423449 - LTR8A LTR ERV1 0 727 230 748 303 138 23 chr3 18101299 18102021 -209422557 + L2 LINE L2 2503 3313 0 226 282 0 47 chr3 18103652 18103737 -209420841 + MIR SINE MIR 65 145 -117 756 251 35 27 chr3 18104560 18104819 -209419759 - L1MA7 LINE L1 -136 6155 5895 541 204 0 0 chr3 18104819 18104932 -209419646 + L1MA7 LINE L1 6173 6285 -6 241 231 31 0 chr3 18107613 18107678 -209416900 - L2 LINE L2 -1 3271 3205 218 292 0 45 chr3 18107805 18107894 -209416684 + MIR SINE MIR 65 149 -113 825 240 39 27 chr3 18109682 18109940 -209414638 - L1MA7 LINE L1 -136 6155 5895 511 221 0 0 chr3 18109940 18110053 -209414525 + L1MA7 LINE L1 6173 6285 -6 590 227 0 14 chr3 18112636 18112777 -209411801 + MIR SINE MIR 9 147 -115 2620 222 30 39 chr3 18113418 18114120 -209410458 + L1MB7 LINE L1 5489 6184 0 974 201 54 0 chr3 18114165 18114369 -209410209 + MER58A DNA MER1_type 10 224 0 203 335 30 0 chr3 18114653 18114817 -209409761 + (TG)n Simple_repeat Simple_repeat 1 169 0 1380 190 99 25 chr3 18116255 18116539 -209408039 - AluJo SINE Alu -7 305 1 970 265 23 10 chr3 18118542 18118844 -209405734 + L1MD3 LINE L1 7672 7977 -18 1045 203 12 8 chr3 18118867 18119108 -209405470 + L1MC1 LINE L1 5989 6230 -103 19702 74 4 23 chr3 18119222 18122092 -209402486 - L1PA5 LINE L1 -2593 3553 737 13581 56 7 0 chr3 18122092 18124727 -209399851 + L1PA5 LINE L1 3532 6152 -2 574 260 41 7 chr3 18124806 18124952 -209399626 + MIR SINE MIR 4 154 -108 2268 93 0 59 chr3 18126029 18126353 -209398225 + AluY SINE Alu 2 306 -5 2182 125 0 3 chr3 18126522 18126825 -209397753 + AluSx SINE Alu 6 307 -5 7443 127 48 31 chr3 18126825 18127032 -209397546 - L1MA3 LINE L1 -26 6279 6077 2240 121 3 0 chr3 18127032 18127329 -209397249 + AluSx SINE Alu 1 298 -14 7443 127 48 31 chr3 18127329 18129598 -209394980 - L1MA3 LINE L1 -228 6077 3782 1912 91 0 4 chr3 18129598 18129840 -209394738 - AluSx SINE Alu -14 298 58 253 242 15 0 chr3 18130629 18130695 -209393883 - L2 LINE L2 -1 3271 3205 218 292 0 45 chr3 18130822 18130911 -209393667 + MIR SINE MIR 65 149 -113 825 240 39 27 chr3 18132698 18132956 -209391622 - L1MA7 LINE L1 -136 6155 5895 511 221 0 0 chr3 18132956 18133069 -209391509 + L1MA7 LINE L1 6173 6285 -6 187 294 111 33 chr3 18137108 18137261 -209387317 - L2 LINE L2 -210 3062 2898 573 234 0 14 chr3 18137438 18137579 -209386999 + MIR SINE MIR 9 147 -115 2620 222 30 39 chr3 18138220 18138922 -209385656 + L1MB7 LINE L1 5489 6184 0 974 201 54 0 chr3 18138967 18139171 -209385407 + MER58A DNA MER1_type 10 224 0 203 335 30 0 chr3 18139354 18139518 -209385060 + (TG)n Simple_repeat Simple_repeat 1 169 0 1326 193 98 28 chr3 18140956 18141241 -209383337 - AluJo SINE Alu -7 305 1 970 265 23 10 chr3 18143244 18143546 -209381032 + L1MD3 LINE L1 7672 7977 -18 1017 208 12 8 chr3 18143569 18143810 -209380768 + L1MC1 LINE L1 5989 6230 -103 13786 62 5 16 chr3 18143924 18146315 -209378263 - L1P3 LINE L1 -2593 3868 1504 2081 141 0 7 chr3 18146799 18147105 -209377473 + AluSx SINE Alu 1 304 -8 206 261 196 22 chr3 18147157 18147249 -209377329 + MIR3 SINE MIR 11 118 -90 205 340 0 29 chr3 18147317 18147420 -209377158 + MIR SINE MIR 104 203 -59 192 306 100 44 chr3 18147577 18147757 -209376821 - L2 LINE L2 -265 3007 2818 2256 90 10 0 chr3 18148541 18148830 -209375748 - AluSx SINE Alu -20 292 1 466 311 44 22 chr3 18149849 18150032 -209374546 + MIR SINE MIR 75 261 -1 220 329 54 47 chr3 18150484 18150633 -209373945 + L2 LINE L2 2598 2747 -567 1969 143 3 7 chr3 18150710 18151011 -209373567 - AluSx SINE Alu -12 300 1 1575 127 88 60 chr3 18151165 18151449 -209373129 + AluSx SINE Alu 3 294 -18 1290 115 5 30 chr3 18151526 18151726 -209372852 - AluSq SINE Alu 0 313 119 2363 82 23 0 chr3 18151975 18152281 -209372297 - AluSp SINE Alu 0 313 1 458 283 142 32 chr3 18152559 18152615 -209371963 + MIR SINE MIR 20 68 -194 2034 125 14 0 chr3 18152615 18152931 -209371647 - AluSq SINE Alu 0 320 1 458 283 142 32 chr3 18152931 18153092 -209371486 + MIR SINE MIR 68 262 0 2759 200 71 20 chr3 18153156 18153201 -209371377 + L1MB4 LINE L1 4404 4445 -1701 1665 193 0 0 chr3 18153201 18153509 -209371069 + AluJb SINE Alu 8 315 0 2759 200 71 20 chr3 18153509 18154161 -209370417 + L1MB4 LINE L1 4445 5139 -1007 2090 124 0 7 chr3 18154838 18155160 -209369418 + AluSx SINE Alu 1 320 0 1271 145 53 42 chr3 18155725 18155755 -209368823 + L1MB4 LINE L1 5106 5134 -1046 2334 106 0 0 chr3 18155755 18156056 -209368522 + AluSc SINE Alu 1 301 -8 1271 145 53 42 chr3 18156056 18156246 -209368332 + L1MB4 LINE L1 5134 5330 -850 1895 173 0 3 chr3 18156246 18156552 -209368026 + AluSx SINE Alu 1 305 -7 1271 145 53 42 chr3 18156552 18156699 -209367879 + L1MB4 LINE L1 5330 5474 -706 1081 129 0 12 chr3 18156700 18156863 -209367715 + FRAM SINE Alu 1 153 -23 43 35 0 0 chr3 18156863 18156920 -209367658 + AT_rich Low_complexity Low_complexity 1 57 0 3904 157 16 25 chr3 18156920 18157238 -209367340 + L1MB4 LINE L1 5478 5798 -382 2107 98 22 0 chr3 18157238 18157552 -209367026 + AluSx SINE Alu 1 320 0 3904 157 16 25 chr3 18157552 18157941 -209366637 + L1MB4 LINE L1 5798 6179 -1 258 292 0 22 chr3 18157941 18158030 -209366548 + L1MC/D LINE L1 5811 5897 -1911 23 0 0 0 chr3 18158222 18158245 -209366333 + AT_rich Low_complexity Low_complexity 1 23 0 1783 147 4 4 chr3 18158394 18158713 -209365865 - AluJb SINE Alu 0 312 23 211 182 91 0 chr3 18158915 18158959 -209365619 + L2 LINE L2 3221 3268 -4 1110 129 99 0 chr3 18159078 18159249 -209365329 + AluSg/x SINE Alu 118 305 -7 2200 103 10 3 chr3 18159249 18159550 -209365028 + AluY SINE Alu 1 303 -8 284 191 168 53 chr3 18160191 18160322 -209364256 + MIR SINE MIR 75 220 -42 601 339 150 28 chr3 18160333 18161612 -209362966 + L2 LINE L2 1630 3084 -188 25 0 0 0 chr3 18162610 18162635 -209361943 + AT_rich Low_complexity Low_complexity 1 25 0 2295 74 0 3 chr3 18162802 18163112 -209361466 + AluSq SINE Alu 1 309 0 205 244 0 0 chr3 18163218 18163259 -209361319 - MIR SINE MIR -138 70 30 510 276 92 54 chr3 18164463 18164724 -209359854 + L3 LINE CR1 625 895 -682 1944 125 0 49 chr3 18165283 18165611 -209358967 + AluSx SINE Alu 1 312 0 2210 122 46 24 chr3 18165622 18165951 -209358627 + MER1B DNA MER1_type 2 337 0 819 167 21 7 chr3 18166032 18166176 -209358402 + FRAM SINE Alu 1 146 -30 1742 183 0 31 chr3 18166449 18166584 -209357994 + AluJo SINE Alu 1 139 -173 1959 132 38 0 chr3 18166584 18166871 -209357707 + AluSq SINE Alu 1 298 -15 1742 183 0 31 chr3 18166871 18167057 -209357521 + AluJo SINE Alu 139 312 0 274 98 24 0 chr3 18167060 18167101 -209357477 + LTR56 LTR ERV1 347 388 -57 37322 90 7 8 chr3 18167159 18172291 -209352287 + L1P LINE L1 11 5138 -1008 228 97 0 0 chr3 18172393 18172424 -209352154 - Alu SINE Alu -269 32 2 2255 112 3 3 chr3 18172469 18172772 -209351806 + AluSq SINE Alu 1 303 -10 1270 295 57 45 chr3 18173123 18173202 -209351376 - LTR67 LTR ERVL -7 550 473 2062 132 7 0 chr3 18173202 18173498 -209351080 + AluSx SINE Alu 1 298 -14 1270 295 57 45 chr3 18173498 18173927 -209350651 - LTR67 LTR ERVL -84 473 36 1896 138 13 30 chr3 18173939 18174244 -209350334 + AluJo SINE Alu 2 301 -11 2099 220 36 13 chr3 18174257 18174726 -209349852 + L1MD2 LINE L1 5669 6148 -211 3105 162 147 5 chr3 18174796 18175369 -209349209 + MER44D DNA MER2_type 71 596 -9 974 164 61 119 chr3 18175371 18175594 -209348984 + MLT1A1 LTR MaLR 46 250 -115 2426 80 7 0 chr3 18175594 18175895 -209348683 - AluSg SINE Alu -7 303 1 974 164 61 119 chr3 18175895 18175964 -209348614 + MLT1A1 LTR MaLR 250 321 -44 317 137 20 0 chr3 18175969 18176020 -209348558 + AluSg SINE Alu 1 52 -249 2903 47 0 6 chr3 18176124 18176488 -209348090 + L1PA2 LINE L1 5646 6007 -148 1084 258 47 17 chr3 18176173 18176534 -209348044 + L1MA4 LINE L1 5695 6066 -234 * 434 273 162 15 chr3 18176721 18176906 -209347672 + MIR SINE MIR 5 214 -48 189 265 73 0 chr3 18177993 18178061 -209346517 - L3b LINE CR1 -336 1247 1175 226 330 45 11 chr3 18178396 18178484 -209346094 - MIR3 SINE MIR -50 158 68 298 315 54 34 chr3 18178954 18179103 -209345475 + MIR SINE MIR 96 247 -15 1936 227 55 26 chr3 18179175 18179204 -209345374 + L1ME3A LINE L1 5469 5496 -674 1828 167 37 45 chr3 18179204 18179581 -209344997 + MLT1A2 LTR MaLR 1 374 0 1936 227 55 26 chr3 18179581 18180083 -209344495 + L1ME3A LINE L1 5496 6015 -155 1968 88 0 12 chr3 18180085 18180336 -209344242 + AluSg SINE Alu 34 281 -29 336 320 47 47 chr3 18180596 18180852 -209343726 + L2 LINE L2 2518 2773 -541 21 0 0 0 chr3 18181293 18181314 -209343264 + AT_rich Low_complexity Low_complexity 1 21 0 264 248 80 35 chr3 18181332 18181445 -209343133 - MIR SINE MIR -51 211 94 964 132 0 0 chr3 18181660 18181789 -209342789 + FLAM_C SINE Alu 1 129 -4 2235 94 0 11 chr3 18181800 18182112 -209342466 + AluSc SINE Alu 1 309 0 298 262 159 0 chr3 18182255 18182362 -209342216 - L2 LINE L2 -4 3309 3186 1851 154 0 42 chr3 18182415 18182726 -209341852 - AluSx SINE Alu -14 298 1 489 172 86 11 chr3 18182913 18183006 -209341572 - AluJo SINE Alu -177 135 36 304 273 13 67 chr3 18183581 18183731 -209340847 + L2 LINE L2 3117 3258 -55 255 322 100 27 chr3 18184595 18184779 -209339799 + MIR SINE MIR 10 205 -35 232 186 0 0 chr3 18185781 18185824 -209338754 - MIR SINE MIR -112 150 108 210 260 98 98 chr3 18186137 18186402 -209338176 + L2 LINE L2 2850 3114 -158 * 599 246 18 35 chr3 18186369 18186540 -209338038 + MIR SINE MIR 48 215 -47 227 294 203 7 chr3 18186821 18186964 -209337614 - MIR SINE MIR -10 252 82 520 183 263 66 chr3 18187050 18187263 -209337315 + MIR SINE MIR 8 262 0 2178 106 17 0 chr3 18187641 18187934 -209336644 - AluSx SINE Alu -14 298 1 301 277 95 36 chr3 18187937 18188074 -209336504 - MIR SINE MIR -61 147 3 549 364 77 51 chr3 18190252 18190882 -209333696 - L2 LINE L2 -14 3258 2618 367 340 78 24 chr3 18190906 18191241 -209333337 - L2 LINE L2 -926 2388 2036 839 193 0 7 chr3 18191241 18191376 -209333202 + AluJo SINE Alu 2 135 -177 232 245 32 43 chr3 18192595 18192689 -209331889 - MIR SINE MIR -50 212 120 243 329 79 0 chr3 18192690 18192766 -209331812 + L2 LINE L2 3229 3310 -3 183 376 88 8 chr3 18192759 18192884 -209331694 - MIR SINE MIR -126 136 2 * 379 305 19 19 chr3 18193835 18193940 -209330638 - MIR3 SINE MIR -22 186 82 1959 141 24 3 chr3 18194392 18194690 -209329888 - AluSx SINE Alu -8 304 1 355 307 35 35 chr3 18194901 18195015 -209329563 + MIR3 SINE MIR 6 119 -89 490 318 134 11 chr3 18195151 18195330 -209329248 + MIR3 SINE MIR 2 202 -6 477 263 171 7 chr3 18195920 18196072 -209328506 - MER5A DNA MER1_type -1 188 12 200 298 192 10 chr3 18196103 18196207 -209328371 + L2 LINE L2 3139 3261 -11 438 289 50 16 chr3 18197845 18197966 -209326612 + MIR SINE MIR 2 126 -136 195 305 51 0 chr3 18249833 18249892 -209274686 - L2 LINE L2 -70 3202 3141 641 289 83 45 chr3 18249911 18250153 -209274425 + MIR SINE MIR 1 251 -11 295 348 16 71 chr3 18250247 18250500 -209274078 - L2 LINE L2 -218 3054 2816 455 257 74 35 chr3 18250739 18251116 -209273462 + L1M4 LINE L1 2853 3244 -2902 1820 165 25 0 chr3 18251161 18251446 -209273132 + AluJo SINE Alu 1 292 -20 537 308 73 27 chr3 18252016 18252425 -209272153 + L1M4 LINE L1 4016 4443 -1703 2061 122 10 0 chr3 18252759 18253053 -209271525 + AluSx SINE Alu 1 297 -15 378 0 0 0 chr3 18253053 18253095 -209271483 + (TG)n Simple_repeat Simple_repeat 1 42 0 438 293 90 42 chr3 18253576 18253672 -209270906 - MIR SINE MIR -16 246 156 2240 78 6 34 chr3 18253672 18253992 -209270586 + AluY SINE Alu 1 311 0 438 293 90 42 chr3 18253992 18254107 -209270471 - MIR SINE MIR -106 156 25 478 179 207 90 chr3 18255143 18255433 -209269145 - MER33 DNA MER1_type 0 324 1 527 133 0 0 chr3 18255460 18255543 -209269035 + AluY SINE Alu 217 299 -12 2360 83 3 3 chr3 18256080 18256382 -209268196 + AluY SINE Alu 1 302 -9 197 228 51 89 chr3 18256410 18256489 -209268089 + MIR SINE MIR 77 152 -110 661 200 21 14 chr3 18256657 18256802 -209267776 + AluSc SINE Alu 154 299 -10 2964 166 21 25 chr3 18256803 18257435 -209267143 + L1MB7 LINE L1 5482 6110 -74 2152 103 0 63 chr3 18257497 18257816 -209266762 - AluSx SINE Alu -13 299 1 375 83 83 0 chr3 18257819 18257879 -209266699 + L1MB7 LINE L1 6114 6178 -6 2263 112 0 22 chr3 18259214 18259528 -209265050 - AluSx SINE Alu -5 307 1 254 227 91 37 chr3 18259628 18259776 -209264802 - L1MC5 LINE L1 -190 7852 7603 262 221 88 0 chr3 18259795 18259908 -209264670 - FLAM_C SINE Alu -10 123 1 268 174 0 0 chr3 18260616 18260662 -209263916 + Alu SINE Alu 1 46 -257 223 268 14 0 chr3 18261001 18261072 -209263506 + T-rich Low_complexity Low_complexity 3 74 0 1242 164 5 19 chr3 18261242 18261450 -209263128 - AluJb SINE Alu -107 205 1 1536 173 76 14 chr3 18261473 18261762 -209262816 - AluJo SINE Alu -3 309 3 659 196 15 8 chr3 18263371 18263504 -209261074 - MER94 DNA DNA 0 134 1 286 325 74 48 chr3 18264109 18264340 -209260238 + L3b LINE CR1 1150 1386 -197 381 294 29 77 chr3 18264932 18265102 -209259476 - MIR3 SINE MIR -6 202 41 1179 194 94 7 chr3 18265132 18265441 -209259137 - MER2 DNA MER2_type -6 339 4 247 288 25 12 chr3 18265710 18265790 -209258788 + MIR SINE MIR 46 126 -82 212 231 115 0 chr3 18266619 18266671 -209257907 - MIR SINE MIR -101 107 50 214 321 33 60 chr3 18266879 18267063 -209257515 - L2 LINE L2 -236 3036 2858 967 317 71 14 chr3 18267108 18267626 -209256952 - L2 LINE L2 -576 2738 2191 1926 143 10 10 chr3 18268336 18268630 -209255948 + AluJb SINE Alu 1 294 -18 207 0 0 0 chr3 18268732 18268755 -209255823 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 471 295 118 13 chr3 18268802 18269004 -209255574 - MIR SINE MIR -25 237 19 672 162 0 0 chr3 18269051 18269162 -209255416 - AluJb SINE Alu -11 301 191 2196 128 0 6 chr3 18269808 18270120 -209254458 - AluSx SINE Alu -2 310 1 246 233 200 33 chr3 18270151 18270271 -209254307 + MIR SINE MIR 72 211 -51 1144 225 24 30 chr3 18270649 18270982 -209253596 + L1MB7 LINE L1 5853 6183 -1 467 292 12 24 chr3 18271094 18271255 -209253323 + MIR3 SINE MIR 21 180 -28 21 0 0 0 chr3 18271898 18271919 -209252659 + AT_rich Low_complexity Low_complexity 1 21 0 2388 89 0 0 chr3 18272391 18272684 -209251894 + AluSg SINE Alu 1 293 -17 367 251 48 75 chr3 18272900 18273015 -209251563 + L1MC4 LINE L1 7030 7147 -895 2081 141 0 3 chr3 18273015 18273312 -209251266 + AluJb SINE Alu 3 298 -14 367 251 48 75 chr3 18273312 18273960 -209250618 + L1MC4 LINE L1 7147 7737 -305 343 273 103 18 chr3 18274113 18274278 -209250300 + L1ME4a LINE L1 5938 6116 -5 359 175 278 0 chr3 18274917 18275014 -209249564 + MIR SINE MIR 51 174 -88 337 278 40 53 chr3 18275288 18275349 -209249229 + MIR SINE MIR 103 163 -99 2165 134 0 0 chr3 18275349 18275648 -209248930 - AluSx SINE Alu -13 299 1 337 278 40 53 chr3 18275648 18275737 -209248841 + MIR SINE MIR 163 251 -11 551 257 7 29 chr3 18277026 18277166 -209247412 + MIR3 SINE MIR 30 166 -42 323 273 114 114 chr3 18277889 18278065 -209246513 - MIR3 SINE MIR -17 191 16 1901 156 0 7 chr3 18278129 18278424 -209246154 - AluJo SINE Alu -18 294 2 23 54 0 0 chr3 18278437 18278474 -209246104 + AT_rich Low_complexity Low_complexity 1 37 0 819 134 0 31 chr3 18278560 18278687 -209245891 + AluSg/x SINE Alu 169 291 -19 670 171 0 0 chr3 18278693 18278804 -209245774 + FLAM_A SINE Alu 1 111 -31 27 0 0 0 chr3 18278807 18278834 -209245744 + AT_rich Low_complexity Low_complexity 1 27 0 258 327 84 9 chr3 18280634 18280741 -209243837 + L2 LINE L2 3196 3310 -3 207 128 77 0 chr3 18280993 18281032 -209243546 - MIR SINE MIR -5 257 216 * 228 81 81 0 chr3 18280998 18281035 -209243543 - L2 LINE L2 -16 3256 3217 324 326 0 0 chr3 18281078 18281167 -209243411 + L2 LINE L2 3184 3272 0 227 348 77 39 chr3 18283598 18283753 -209240825 + L2 LINE L2 3080 3240 -32 227 317 0 0 chr3 18283764 18283824 -209240754 - MIR3 SINE MIR -33 175 116 307 284 123 0 chr3 18285709 18285855 -209238723 + MIR SINE MIR 41 203 -59 2382 79 0 29 chr3 18285953 18286269 -209238309 + AluY SINE Alu 1 307 -4 1885 158 0 10 chr3 18286625 18286923 -209237655 - AluJb SINE Alu -17 295 1 276 360 87 26 chr3 18288199 18288452 -209236126 + L2 LINE L2 2791 3057 -215 946 279 82 47 chr3 18288477 18289240 -209235338 + L2 LINE L2 2520 3313 0 925 209 61 15 chr3 18289928 18290212 -209234366 - MER93a LTR ERV1 -60 342 1 228 224 122 31 chr3 18290229 18290327 -209234251 - MARNA DNA Mariner -236 350 244 2256 103 3 0 chr3 18290788 18291090 -209233488 - AluSx SINE Alu -9 303 1 276 360 87 26 chr3 18292366 18292619 -209231959 + L2 LINE L2 2791 3057 -215 946 279 82 47 chr3 18292644 18293407 -209231171 + L2 LINE L2 2520 3313 0 186 326 31 71 chr3 18294621 18294719 -209229859 + L2 LINE L2 2990 3083 -189 2087 134 10 0 chr3 18295320 18295626 -209228952 - AluSx SINE Alu -3 309 1 774 157 8 15 chr3 18295831 18295965 -209228613 - FLAM_C SINE Alu -10 133 1 388 167 152 80 chr3 18296138 18296276 -209228302 - L1ME3A LINE L1 -3 6167 6020 3185 252 78 21 chr3 18296277 18297891 -209226687 - L1ME3A LINE L1 -193 5977 4457 1949 140 0 7 chr3 18297891 18298211 -209226367 + AluSx SINE Alu 2 319 0 3185 252 78 21 chr3 18298211 18298434 -209226144 - L1ME3A LINE L1 -1713 4457 4248 186 43 0 0 chr3 18298434 18298457 -209226121 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3185 252 78 21 chr3 18298457 18298563 -209226015 - L1ME3A LINE L1 -1922 4248 3916 1602 162 66 11 chr3 18298587 18298859 -209225719 - AluJb SINE Alu -25 287 1 1630 134 0 8 chr3 18299294 18299567 -209225011 + AluSx SINE Alu 49 319 0 737 245 49 46 chr3 18299591 18299790 -209224788 - L1M4 LINE L1 -1924 4222 4020 186 43 0 0 chr3 18299790 18299813 -209224765 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 737 245 49 46 chr3 18299813 18299919 -209224659 - L1M4 LINE L1 -2126 4020 3916 1602 162 66 11 chr3 18299943 18300215 -209224363 - AluJb SINE Alu -25 287 1 6985 196 37 20 chr3 18300878 18301944 -209222634 - L1MC1 LINE L1 0 6333 5287 2191 138 15 6 chr3 18301944 18302278 -209222300 - MER1B DNA MER1_type 0 337 1 6985 196 37 20 chr3 18302278 18302572 -209222006 - L1MC1 LINE L1 -1046 5287 4999 240 35 0 0 chr3 18302572 18302601 -209221977 + (TTA)n Simple_repeat Simple_repeat 3 31 0 6985 196 37 20 chr3 18302601 18304232 -209220346 - L1MC1 LINE L1 -1334 4999 3287 1653 169 0 83 chr3 18304562 18304876 -209219702 + AluJb SINE Alu 1 288 -24 27 0 0 0 chr3 18304882 18304909 -209219669 + AT_rich Low_complexity Low_complexity 1 27 0 2392 103 0 0 chr3 18305166 18305478 -209219100 - AluSx SINE Alu 0 312 1 308 314 16 16 chr3 18305543 18305664 -209218914 + MIR SINE MIR 56 176 -86 2127 210 105 55 chr3 18306120 18306206 -209218372 - HAL1 LINE L1 -109 2398 2318 1834 171 0 0 chr3 18306206 18306493 -209218085 + AluJb SINE Alu 1 287 -25 2127 210 105 55 chr3 18306493 18307330 -209217248 - HAL1 LINE L1 -189 2318 1429 186 353 0 69 chr3 18307426 18307528 -209217050 + L3b LINE CR1 1203 1297 -286 379 223 69 39 chr3 18307619 18307749 -209216829 - MER103 DNA DNA -25 141 8 350 276 154 16 chr3 18307839 18307962 -209216616 + L3b LINE CR1 1375 1514 -69 524 267 68 0 chr3 18308092 18308238 -209216340 - MIR SINE MIR 0 262 107 360 260 142 47 chr3 18308695 18308864 -209215714 + MIR3 SINE MIR 17 201 -7 188 205 26 0 chr3 18309200 18309239 -209215339 + L2 LINE L2 3265 3304 -9 730 308 19 35 chr3 18309300 18309560 -209215018 + MIR SINE MIR 2 257 -5 290 335 89 63 chr3 18310669 18310985 -209213593 - L2 LINE L2 -48 3224 2901 1447 154 16 87 chr3 18311193 18311313 -209213265 + L1MC2 LINE L1 5989 6116 -228 2236 114 7 0 chr3 18311313 18311620 -209212958 + AluSx SINE Alu 1 309 -3 1447 154 16 87 chr3 18311620 18311869 -209212709 + L1MC2 LINE L1 6116 6332 -12 21 0 0 0 chr3 18311954 18311975 -209212603 + AT_rich Low_complexity Low_complexity 1 21 0 712 187 0 0 chr3 18312101 18312224 -209212354 + FLAM_C SINE Alu 1 123 -20 225 0 0 0 chr3 18312242 18312267 -209212311 + (GA)n Simple_repeat Simple_repeat 1 25 0 2304 103 3 0 chr3 18312945 18313245 -209211333 - AluSp SINE Alu -12 301 1 366 271 12 0 chr3 18313562 18313647 -209210931 + MIR SINE MIR 66 151 -111 335 307 0 0 chr3 18313786 18313874 -209210704 - L2 LINE L2 -4 3268 3181 220 194 32 16 chr3 18314249 18314311 -209210267 + T-rich Low_complexity Low_complexity 3 65 0 27 62 0 0 chr3 18314511 18314559 -209210019 + AT_rich Low_complexity Low_complexity 1 48 0 5131 110 30 93 chr3 18314749 18315959 -209208619 + L1MA9 LINE L1 5143 6263 -49 2254 102 6 10 chr3 18315988 18316301 -209208277 - AluSx SINE Alu 0 312 1 234 156 0 0 chr3 18317138 18317183 -209207395 + CT-rich Low_complexity Low_complexity 2 46 0 24 32 0 0 chr3 18317932 18317963 -209206615 + AT_rich Low_complexity Low_complexity 1 31 0 212 243 86 14 chr3 18318085 18318155 -209206423 - MIR SINE MIR -109 153 79 705 195 0 0 chr3 18318578 18318701 -209205877 - FRAM SINE Alu -16 160 38 277 298 129 32 chr3 18318783 18318907 -209205671 - MIR3 SINE MIR -38 170 35 249 33 0 0 chr3 18318910 18318940 -209205638 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 319 240 103 69 chr3 18318989 18319164 -209205414 - MIR SINE MIR -58 204 24 239 154 0 154 chr3 18319659 18319684 -209204894 + MIR3 SINE MIR 124 151 -57 1836 162 0 7 chr3 18319684 18319968 -209204610 + AluJo SINE Alu 1 282 -30 258 32 0 0 chr3 18319971 18320002 -209204576 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 239 154 0 154 chr3 18320002 18320037 -209204541 + MIR3 SINE MIR 153 178 -30 198 307 53 0 chr3 18320153 18320228 -209204350 + MIR3 SINE MIR 121 199 -9 213 288 30 15 chr3 18321463 18321529 -209203049 - MIR SINE MIR -14 248 182 910 196 98 0 chr3 18321631 18321835 -209202743 + Charlie1 DNA MER1_type 1 224 -2537 620 187 0 0 chr3 18321836 18321959 -209202619 + Charlie1 DNA MER1_type 2625 2747 -14 713 160 102 16 chr3 18323418 18323605 -209200973 - LTR37B LTR ERV1 -55 413 211 6870 71 9 0 chr3 18323605 18324800 -209199778 - L1PA6 LINE L1 0 6154 4957 229 254 40 8 chr3 18325743 18325869 -209198709 + L1MEc LINE L1 1029 1158 -5238 330 311 11 0 chr3 18326135 18326225 -209198353 + L1MEc LINE L1 1134 1224 -4981 291 261 121 20 chr3 18326265 18326464 -209198114 + L1MEc LINE L1 1220 1438 -4779 1878 162 0 19 chr3 18326495 18326809 -209197769 + AluSx SINE Alu 1 308 -4 677 303 143 8 chr3 18326996 18327472 -209197106 + L1ME2 LINE L1 5412 5951 -213 1917 142 3 35 chr3 18327524 18327840 -209196738 - AluJb SINE Alu -6 306 1 235 235 39 0 chr3 18327967 18328018 -209196560 - MIR SINE MIR -59 149 97 824 271 58 96 chr3 18328050 18328614 -209195964 - L2 LINE L2 -46 3267 2253 507 273 97 30 chr3 18329275 18329440 -209195138 - MIR3 SINE MIR -17 191 16 198 0 0 0 chr3 18330080 18330102 -209194476 + (T)n Simple_repeat Simple_repeat 1 22 0 2224 129 3 0 chr3 18332998 18333308 -209191270 - AluSx SINE Alu -1 311 1 23 0 0 0 chr3 18333316 18333339 -209191239 + AT_rich Low_complexity Low_complexity 1 23 0 1971 164 0 3 chr3 18333362 18333667 -209190911 + AluJb SINE Alu 1 304 -8 341 223 287 0 chr3 18333788 18333882 -209190696 - FLAM_A SINE Alu -12 121 1 2349 68 0 0 chr3 18334266 18334594 -209189984 - AluY SINE Alu 0 328 1 197 334 201 45 chr3 18335216 18335863 -209188715 - L2 LINE L2 -834 2480 1733 1024 178 0 17 chr3 18336324 18336504 -209188074 + FRAM SINE Alu 1 176 0 433 152 11 11 chr3 18336506 18336598 -209187980 + GA-rich Low_complexity Low_complexity 4 95 0 1429 174 92 32 chr3 18336604 18336886 -209187692 + AluJo SINE Alu 1 299 -13 538 305 12 24 chr3 18337672 18337836 -209186742 - MIR3 SINE MIR -21 187 26 211 229 0 0 chr3 18338167 18338215 -209186363 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 259 288 0 0 chr3 18339021 18339080 -209185498 + L2 LINE L2 3250 3308 -5 994 184 15 5 chr3 18339700 18339896 -209184682 + MER2 DNA MER2_type 1 198 -147 1214 121 0 0 chr3 18339896 18340062 -209184516 + AluJb SINE Alu 1 166 -146 650 137 0 0 chr3 18340441 18340570 -209184008 - AluJo SINE Alu 0 339 211 1198 196 0 10 chr3 18340629 18340833 -209183745 - AluJo SINE Alu -104 208 7 1372 156 0 26 chr3 18340970 18341201 -209183377 - AluJo SINE Alu -87 225 1 449 218 0 0 chr3 18341219 18341297 -209183281 + MER2 DNA MER2_type 268 345 0 375 272 107 0 chr3 18341403 18341506 -209183072 - L2 LINE L2 -27 3286 3173 2066 119 3 3 chr3 18342067 18342375 -209182203 + AluSx SINE Alu 1 308 0 208 237 0 0 chr3 18342434 18342472 -209182106 - L2 LINE L2 -90 3182 3145 224 196 0 0 chr3 18343075 18343121 -209181457 - L2 LINE L2 -237 3035 2990 1720 105 0 0 chr3 18344078 18344307 -209180271 - AluSg/x SINE Alu -5 307 79 261 263 139 34 chr3 18344602 18344697 -209179881 + MIR3 SINE MIR 20 132 -76 2251 78 0 7 chr3 18344697 18345006 -209179572 - AluSc SINE Alu 0 307 1 261 263 139 34 chr3 18345006 18345053 -209179525 + MIR3 SINE MIR 132 173 -35 549 273 0 8 chr3 18345499 18345620 -209178958 - MIR SINE MIR -59 149 30 680 168 56 25 chr3 18346104 18346265 -209178313 - FRAM SINE Alu -1 175 10 199 348 87 26 chr3 18346587 18346702 -209177876 + L2 LINE L2 3150 3271 -1 231 293 191 20 chr3 18349151 18349298 -209175280 + MIR3 SINE MIR 37 208 0 452 236 51 67 chr3 18350197 18350375 -209174203 + MER69A DNA AcHobo 1 175 -2 2131 80 13 35 chr3 18351073 18351384 -209173194 + AluSq SINE Alu 1 304 -9 704 163 0 59 chr3 18351877 18352012 -209172566 + FLAM_C SINE Alu 1 127 -6 25 75 0 0 chr3 18352012 18352065 -209172513 + AT_rich Low_complexity Low_complexity 1 53 0 243 339 46 28 chr3 18352836 18352945 -209171633 - MIR SINE MIR -76 132 22 22 35 0 0 chr3 18353473 18353502 -209171076 + AT_rich Low_complexity Low_complexity 1 29 0 2014 139 3 0 chr3 18353643 18353952 -209170626 + AluSx SINE Alu 1 310 -2 214 137 0 39 chr3 18354953 18355004 -209169574 + (TTTTC)n Simple_repeat Simple_repeat 3 51 0 228 67 0 0 chr3 18355417 18355447 -209169131 + (T)n Simple_repeat Simple_repeat 1 30 0 691 118 0 0 chr3 18355449 18355551 -209169027 - AluJo SINE Alu 0 312 211 1104 196 0 10 chr3 18355610 18355814 -209168764 - AluJo SINE Alu -104 208 7 951 273 70 0 chr3 18356104 18356346 -209168232 - MIR SINE MIR 0 262 4 2350 96 0 0 chr3 18356482 18356795 -209167783 - AluSq SINE Alu 0 313 1 1775 113 44 22 chr3 18357005 18357315 -209167263 - AluSg SINE Alu 0 318 3 45 34 0 0 chr3 18357341 18357400 -209167178 + AT_rich Low_complexity Low_complexity 1 59 0 216 278 0 0 chr3 18357619 18357673 -209166905 + (CATA)n Simple_repeat Simple_repeat 3 56 0 209 278 19 19 chr3 18359680 18359734 -209164844 + L2 LINE L2 3217 3270 -2 661 319 4 62 chr3 18359751 18360027 -209164551 - MIR SINE MIR 0 262 3 2066 140 0 6 chr3 18360148 18360462 -209164116 + AluJo SINE Alu 1 312 0 410 247 237 21 chr3 18362311 18362497 -209162081 + MIR SINE MIR 31 256 -6 225 276 0 52 chr3 18364110 18364226 -209160352 + A-rich Low_complexity Low_complexity 1 110 0 596 274 85 33 chr3 18364270 18364482 -209160096 - MIR SINE MIR -26 236 14 * 797 209 43 12 chr3 18364469 18364632 -209159946 + MER5B DNA MER1_type 11 178 0 300 303 52 42 chr3 18365106 18365265 -209159313 - MIR SINE MIR -69 193 21 304 300 62 23 chr3 18366446 18366576 -209158002 - MIR3 SINE MIR -10 198 64 661 182 23 15 chr3 18366986 18367118 -209157460 + FLAM_C SINE Alu 1 133 0 201 288 51 0 chr3 18367880 18367939 -209156639 - L2 LINE L2 -70 3202 3141 649 289 83 45 chr3 18367958 18368200 -209156378 + MIR SINE MIR 1 251 -11 277 348 16 71 chr3 18368294 18368547 -209156031 - L2 LINE L2 -218 3054 2816 532 286 177 38 chr3 18368752 18369208 -209155370 + L1M4 LINE L1 2809 3200 -2946 1708 165 25 0 chr3 18369208 18369493 -209155085 + AluJo SINE Alu 1 292 -20 532 286 177 38 chr3 18369493 18370472 -209154106 + L1M4 LINE L1 3200 4443 -1703 2202 115 0 0 chr3 18370806 18371118 -209153460 + AluSx SINE Alu 1 312 0 269 153 0 17 chr3 18371977 18372036 -209152542 + CT-rich Low_complexity Low_complexity 2 59 0 1256 185 80 0 chr3 18372440 18372716 -209151862 + AluJo SINE Alu 2 299 -13 1297 84 90 0 chr3 18373294 18373437 -209151141 + MER107 DNA MER1_type 3 166 -31 195 42 0 0 chr3 18373437 18373461 -209151117 + (CAAAC)n Simple_repeat Simple_repeat 2 25 0 1297 84 90 0 chr3 18373461 18373495 -209151083 + MER107 DNA MER1_type 166 196 -1 180 304 128 20 chr3 18375409 18375511 -209149067 - L2 LINE L2 -18 3254 3142 222 346 77 0 chr3 18375811 18375915 -209148663 - L3 LINE CR1 -48 1529 1418 2256 105 0 0 chr3 18376278 18376582 -209147996 + AluSx SINE Alu 1 304 -8 267 289 13 0 chr3 18376595 18376671 -209147907 + MIR SINE MIR 186 262 0 566 314 39 39 chr3 18376690 18376919 -209147659 + MIR SINE MIR 28 256 -6 268 261 34 23 chr3 18377545 18377633 -209146945 + MIR SINE MIR 53 141 -67 276 254 99 0 chr3 18377671 18377742 -209146836 + MIR SINE MIR 114 191 -71 276 254 154 85 chr3 18377772 18377902 -209146676 - MIR SINE MIR -68 140 1 551 284 48 24 chr3 18377919 18378127 -209146451 + MIR SINE MIR 1 213 -49 266 234 219 31 chr3 18378262 18378390 -209146188 + MIR3 SINE MIR 43 194 -14 1053 266 99 27 chr3 18379027 18379511 -209145067 - LTR33 LTR ERVL -2 519 1 194 267 99 20 chr3 18379544 18379645 -209144933 - MIR SINE MIR -142 120 12 21 71 0 0 chr3 18379902 18379944 -209144634 + AT_rich Low_complexity Low_complexity 1 42 0 195 354 94 44 chr3 18380307 18380488 -209144090 - L2 LINE L2 -10 3262 3073 * 387 299 85 17 chr3 18380472 18380649 -209143929 + MIR SINE MIR 29 217 -45 399 308 130 43 chr3 18380815 18381572 -209143006 - L2 LINE L2 -190 3082 2245 266 253 133 0 chr3 18381814 18381897 -209142681 - MIR SINE MIR -70 192 99 236 277 8 92 chr3 18382404 18382534 -209142044 + MIR SINE MIR 111 229 -33 222 62 0 0 chr3 18383175 18383207 -209141371 + (TC)n Simple_repeat Simple_repeat 2 33 0 230 374 61 10 chr3 18383311 18383410 -209141168 - L2 LINE L2 -1 3271 3168 1454 249 59 32 chr3 18383507 18383948 -209140630 + LTR16C LTR ERVL 36 488 -3 203 369 78 0 chr3 18384028 18384114 -209140464 - L2 LINE L2 -25 3247 3150 1672 126 81 35 chr3 18384114 18384399 -209140179 + AluSg SINE Alu 1 298 -12 203 369 78 0 chr3 18384399 18384415 -209140163 - L2 LINE L2 -122 3150 3137 243 146 0 0 chr3 18384415 18384456 -209140122 + (GGGA)n Simple_repeat Simple_repeat 1 41 0 1889 155 10 0 chr3 18384466 18384770 -209139808 + AluJb SINE Alu 1 307 -5 378 177 21 10 chr3 18384781 18384877 -209139701 + GA-rich Low_complexity Low_complexity 4 100 0 479 299 58 102 chr3 18384879 18385030 -209139548 - L2 LINE L2 -113 3159 3003 2183 105 0 0 chr3 18385030 18385334 -209139244 - AluSx SINE Alu -8 304 1 479 299 58 102 chr3 18385334 18385526 -209139052 - L2 LINE L2 -269 3003 2831 867 194 61 0 chr3 18385615 18385780 -209138798 + FAM SINE Alu 1 175 0 454 161 46 8 chr3 18385802 18385932 -209138646 + GA-rich Low_complexity Low_complexity 4 138 0 292 213 39 8 chr3 18386628 18386708 -209137870 + L1MC/D LINE L1 5409 5490 -684 2072 104 7 20 chr3 18386708 18387007 -209137571 + AluSx SINE Alu 1 295 -17 292 213 39 8 chr3 18387007 18387018 -209137560 + L1MC/D LINE L1 5490 5499 -675 1911 138 16 0 chr3 18387330 18387634 -209136944 - AluSx SINE Alu -3 309 1 207 0 0 0 chr3 18388827 18388850 -209135728 + (A)n Simple_repeat Simple_repeat 1 23 0 319 292 94 10 chr3 18388922 18389092 -209135486 + MIR SINE MIR 22 212 -50 1929 138 3 0 chr3 18389421 18389712 -209134866 + AluSx SINE Alu 2 293 -19 1953 121 0 23 chr3 18389719 18390025 -209134553 + AluSx SINE Alu 1 299 -13 2110 90 10 20 chr3 18390509 18390809 -209133769 + AluSq SINE Alu 1 297 -16 1439 161 57 11 chr3 18391928 18392207 -209132371 - AluSg SINE Alu -18 292 1 483 245 77 13 chr3 18392441 18392625 -209131953 + L1ME3A LINE L1 5959 6162 -2 677 91 0 83 chr3 18392637 18392691 -209131887 - L1MA3 LINE L1 0 6305 6265 2321 76 13 0 chr3 18392691 18392993 -209131585 - AluSq SINE Alu -7 306 1 677 91 0 83 chr3 18392993 18393059 -209131519 - L1MA3 LINE L1 -40 6265 6195 853 195 0 0 chr3 18393074 18393247 -209131331 + AluJb SINE Alu 134 306 0 1728 148 4 0 chr3 18393377 18393641 -209130937 + AluJo SINE Alu 1 265 -47 299 198 136 12 chr3 18393992 18394073 -209130505 - MIR3 SINE MIR -10 198 108 1895 113 3 40 chr3 18394143 18394282 -209130296 + AluSq SINE Alu 1 144 -169 2634 35 0 0 chr3 18394282 18394593 -209129985 + AluY SINE Alu 1 311 0 1895 113 3 40 chr3 18394593 18394754 -209129824 + AluSq SINE Alu 144 290 -23 1947 130 0 32 chr3 18395043 18395358 -209129220 - AluSg SINE Alu -5 305 1 1669 145 52 0 chr3 18395362 18395658 -209128920 - AluSx SINE Alu 0 310 1 1592 171 0 17 chr3 18395660 18395947 -209128631 - AluJo SINE Alu -9 303 22 305 239 25 0 chr3 18395947 18396027 -209128551 - L1M4c LINE L1 -4556 1826 1689 * 3689 130 74 2 chr3 18396022 18396631 -209127947 + L1MC1 LINE L1 5453 6105 -228 318 133 0 50 chr3 18396632 18396692 -209127886 + AluJo SINE Alu 87 143 -159 * 1684 116 4 4 chr3 18396684 18396926 -209127652 + MER50 LTR ERV1 493 734 0 518 92 2 0 chr3 18397021 18397096 -209127482 - MER4-int LTR ERV1 -989 5609 5545 992 100 27 20 chr3 18397148 18397298 -209127280 + MER50-int LTR ERV1 6969 7119 -86 321 271 113 46 chr3 18397307 18397328 -209127250 + L1ME3 LINE L1 2070 2088 -4308 2029 122 0 7 chr3 18397328 18397623 -209126955 + AluSx SINE Alu 3 295 -17 321 271 113 46 chr3 18397623 18397752 -209126826 + L1ME3 LINE L1 2088 2230 -4166 276 212 53 76 chr3 18397755 18397769 -209126809 + L1ME3 LINE L1 2202 2215 -4181 2000 114 7 26 chr3 18397769 18398075 -209126503 + AluSx SINE Alu 1 300 -12 276 212 53 76 chr3 18398075 18398153 -209126425 + L1ME3 LINE L1 2215 2293 -4103 2059 104 7 3 chr3 18398153 18398441 -209126137 + AluSg1 SINE Alu 1 289 -20 276 212 53 76 chr3 18398441 18398479 -209126099 + L1ME3 LINE L1 2293 2330 -4066 287 282 86 8 chr3 18399744 18399861 -209124717 - MIR SINE MIR -33 229 104 252 324 57 29 chr3 18400614 18400719 -209123859 - MIR SINE MIR -63 145 38 308 270 43 26 chr3 18400900 18401015 -209123563 - MIR3 SINE MIR -32 176 60 237 162 206 0 chr3 18401051 18401119 -209123459 + MER103 DNA DNA 12 93 -73 293 267 53 0 chr3 18402078 18402153 -209122425 + MIR SINE MIR 113 191 -71 * 485 228 92 71 chr3 18402148 18402332 -209122246 - MIR SINE MIR 0 262 75 201 314 43 14 chr3 18403208 18403278 -209121300 - MIR SINE MIR -90 118 47 817 152 0 30 chr3 18403540 18403672 -209120906 + FLAM_C SINE Alu 6 133 -10 21 0 0 0 chr3 18403806 18403827 -209120751 + AT_rich Low_complexity Low_complexity 1 21 0 1680 191 126 55 chr3 18403928 18404453 -209120125 - MER68 LTR ERV1 0 562 1 3478 121 31 0 chr3 18404606 18405087 -209119491 + MER1A DNA MER1_type 34 529 0 2332 82 3 0 chr3 18405513 18405818 -209118760 - AluSx SINE Alu -2 310 5 1511 159 62 38 chr3 18405852 18406142 -209118436 + AluJo SINE Alu 1 297 -15 2486 241 56 32 chr3 18406143 18407023 -209117555 + L1ME3 LINE L1 3571 4471 -1744 213 109 0 55 chr3 18407568 18407623 -209116955 + (TA)n Simple_repeat Simple_repeat 2 53 0 343 106 0 0 chr3 18407623 18407670 -209116908 - MER4E LTR ERV1 -69 697 651 641 256 118 13 chr3 18407689 18407927 -209116651 + L1MC4a LINE L1 5732 5994 -1814 2113 89 3 10 chr3 18408131 18408435 -209116143 + AluSx SINE Alu 1 302 -10 714 221 39 24 chr3 18408542 18408853 -209115725 + L1ME3 LINE L1 4544 6117 -122 784 129 187 0 chr3 18408946 18409085 -209115493 + FRAM SINE Alu 1 162 -14 348 144 31 62 chr3 18409085 18409182 -209115396 + L1ME3 LINE L1 6114 6207 -24 303 264 300 0 chr3 18409198 18409308 -209115270 - L2 LINE L2 -556 2758 2616 1130 53 0 13 chr3 18409326 18409476 -209115102 + AluSp/q SINE Alu 155 302 -11 287 282 86 8 chr3 18410816 18410933 -209113645 - MIR SINE MIR -33 229 104 252 324 57 29 chr3 18411686 18411791 -209112787 - MIR SINE MIR -63 145 38 308 270 43 26 chr3 18411972 18412087 -209112491 - MIR3 SINE MIR -32 176 60 247 162 206 0 chr3 18412123 18412191 -209112387 + MER103 DNA DNA 12 93 -73 293 267 53 0 chr3 18413150 18413225 -209111353 + MIR SINE MIR 113 191 -71 * 485 228 92 71 chr3 18413220 18413404 -209111174 - MIR SINE MIR 0 262 75 198 0 0 0 chr3 18413583 18413605 -209110973 + (A)n Simple_repeat Simple_repeat 1 22 0 201 314 43 14 chr3 18414283 18414353 -209110225 - MIR SINE MIR -90 118 47 817 152 0 30 chr3 18414615 18414747 -209109831 + FLAM_C SINE Alu 6 133 -10 21 0 0 0 chr3 18414881 18414902 -209109676 + AT_rich Low_complexity Low_complexity 1 21 0 1698 189 126 55 chr3 18415003 18415528 -209109050 - MER68 LTR ERV1 0 562 1 3422 118 31 6 chr3 18415681 18416165 -209108413 + MER1A DNA MER1_type 34 529 0 2407 62 0 3 chr3 18416591 18416900 -209107678 - AluY SINE Alu -3 308 1 1536 131 39 50 chr3 18416900 18417070 -209107508 - L1MB3 LINE L1 -352 5831 5664 2097 94 10 0 chr3 18417070 18417358 -209107220 - AluSq SINE Alu -22 291 1 1536 131 39 50 chr3 18417358 18417469 -209107109 - L1MB3 LINE L1 -519 5664 5553 3530 157 8 8 chr3 18417713 18418325 -209106253 - L1MB8 LINE L1 0 6178 5567 288 243 53 74 chr3 18418390 18418579 -209105999 - L1MC5 LINE L1 -542 7419 7235 254 29 88 0 chr3 18418596 18418630 -209105948 - L1M4 LINE L1 -1225 4921 4885 1872 156 0 13 chr3 18418637 18418952 -209105626 - AluJb SINE Alu -1 311 1 1431 183 66 3 chr3 18418975 18419264 -209105314 - AluJo SINE Alu -3 309 3 470 308 101 17 chr3 18419300 18419490 -209105088 - L1MEc LINE L1 -6098 298 83 207 0 0 0 chr3 18419490 18419513 -209105065 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 470 308 101 17 chr3 18419513 18419559 -209105019 - L1MEc LINE L1 -6313 83 42 1212 220 69 40 chr3 18419561 18419713 -209104865 - L1MEc LINE L1 -5218 1178 1032 2082 101 0 0 chr3 18419713 18420010 -209104568 - AluSq SINE Alu 0 302 6 1212 220 69 40 chr3 18420010 18420278 -209104300 - L1MEc LINE L1 -5364 1032 745 1066 163 69 0 chr3 18420386 18420588 -209103990 - AluJo SINE Alu -12 300 85 2243 92 3 13 chr3 18420588 18420903 -209103675 - AluSp SINE Alu -1 312 1 1079 116 29 6 chr3 18421121 18421293 -209103285 + MER47A DNA MER2_type 70 245 -121 803 117 17 0 chr3 18421296 18421416 -209103162 + AluSg/x SINE Alu 177 298 -12 303 156 0 0 chr3 18421419 18421464 -209103114 + MER47A DNA MER2_type 322 366 0 363 297 103 7 chr3 18421492 18421647 -209102931 - MIR SINE MIR -73 189 20 204 333 19 0 chr3 18421854 18421908 -209102670 + L2 LINE L2 3205 3259 -13 1938 103 30 30 chr3 18422271 18422572 -209102006 - AluSg SINE Alu -9 301 1 2217 92 0 20 chr3 18423718 18424021 -209100557 + AluSq SINE Alu 12 308 -5 1918 119 54 0 chr3 18424227 18424521 -209100057 - AluSg SINE Alu 0 310 1 448 286 118 70 chr3 18424761 18425118 -209099460 - L1ME3 LINE L1 -196 5966 5593 1978 107 14 3 chr3 18425706 18425997 -209098581 - AluSx SINE Alu -18 294 1 1661 155 0 38 chr3 18426355 18426671 -209097907 + AluJb SINE Alu 1 304 -8 22 0 0 0 chr3 18426704 18426726 -209097852 + AT_rich Low_complexity Low_complexity 1 22 0 2284 88 0 0 chr3 18426726 18427022 -209097556 + AluY SINE Alu 1 296 -15 783 195 0 0 chr3 18427025 18427153 -209097425 - AluJo/FLAM SINE Alu -174 128 1 234 243 214 19 chr3 18427333 18427436 -209097142 + L2 LINE L2 3150 3272 0 236 323 47 0 chr3 18428227 18428322 -209096256 + MIR SINE MIR 64 163 -60 349 253 13 0 chr3 18428500 18428579 -209095999 + MIR SINE MIR 166 245 -17 232 227 130 64 chr3 18428658 18428770 -209095808 - MIR SINE MIR -42 220 87 2355 174 29 13 chr3 18428819 18429274 -209095304 - L1MB7 LINE L1 -208 5976 5515 369 0 0 0 chr3 18429304 18429345 -209095233 + (TG)n Simple_repeat Simple_repeat 2 42 0 1420 113 18 5 chr3 18429346 18429567 -209095011 - L1PA8 LINE L1 -10 6162 5939 192 205 26 0 chr3 18429975 18430014 -209094564 - L2 LINE L2 -43 3270 3231 1837 112 46 30 chr3 18430048 18430353 -209094225 - AluJb SINE Alu -2 310 1 311 281 52 10 chr3 18430420 18430516 -209094062 - L1ME LINE L1 -5019 1063 964 1494 243 121 56 chr3 18430531 18430794 -209093784 - L1ME LINE L1 -5220 850 606 2297 81 0 3 chr3 18430794 18431091 -209093487 - AluSq SINE Alu -17 296 1 1494 243 121 56 chr3 18431091 18431424 -209093154 - L1ME LINE L1 -5464 606 186 1966 125 14 0 chr3 18431424 18431720 -209092858 - AluSx SINE Alu -1 311 12 1494 243 121 56 chr3 18431720 18431914 -209092664 - L1ME LINE L1 -5884 186 6 198 0 0 0 chr3 18431973 18431995 -209092583 + (T)n Simple_repeat Simple_repeat 1 22 0 302 253 0 81 chr3 18432204 18432291 -209092287 - L2 LINE L2 -7 3265 3186 1927 114 35 7 chr3 18432292 18432581 -209091997 - AluSx SINE Alu -15 297 1 617 138 147 17 chr3 18432933 18433049 -209091529 + FLAM_C SINE Alu 1 131 -2 2011 107 0 21 chr3 18433584 18433873 -209090705 - AluSx SINE Alu -29 283 1 273 136 0 0 chr3 18434311 18434355 -209090223 + Charlie4 DNA MER1_type 1864 1907 -54 296 247 103 41 chr3 18434751 18434848 -209089730 + MIR SINE MIR 82 184 -78 27 0 0 0 chr3 18436722 18436749 -209087829 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr3 18436880 18436900 -209087678 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 21 57 0 0 chr3 18439517 18439552 -209085026 + AT_rich Low_complexity Low_complexity 1 35 0 1924 145 17 0 chr3 18439948 18440245 -209084333 - AluSx SINE Alu -10 302 1 1038 157 68 36 chr3 18440971 18441220 -209083358 - AluJo SINE Alu -55 257 1 1609 151 83 88 chr3 18441267 18441439 -209083139 + L1MB7 LINE L1 5736 5907 -277 1844 181 27 0 chr3 18441439 18441777 -209082801 - MER7A DNA MER2_type 0 346 2 1609 151 83 88 chr3 18441777 18441890 -209082688 + L1MB7 LINE L1 5907 6019 -165 2278 158 41 14 chr3 18441890 18442308 -209082270 + MSTB1 LTR MaLR 4 432 0 1609 151 83 88 chr3 18442308 18442453 -209082125 + L1MB7 LINE L1 6019 6165 -19 1325 164 12 12 chr3 18442648 18442892 -209081686 + AluJo SINE Alu 50 293 -19 2128 112 0 10 chr3 18442898 18443203 -209081375 - AluSg SINE Alu -8 302 1 25 0 0 0 chr3 18443212 18443237 -209081341 + AT_rich Low_complexity Low_complexity 1 25 0 1852 154 3 3 chr3 18443437 18443736 -209080842 - AluSx SINE Alu -13 299 1 189 107 0 0 chr3 18444087 18444115 -209080463 + (GGGGA)n Simple_repeat Simple_repeat 1 28 0 800 160 84 0 chr3 18445036 18445167 -209079411 - AluJb SINE Alu -14 298 157 426 226 128 49 chr3 18445554 18445718 -209078860 - MIR SINE MIR -52 210 34 2331 68 0 16 chr3 18445842 18446150 -209078428 - AluY SINE Alu -8 303 1 1960 112 39 3 chr3 18446206 18446491 -209078087 - AluSx SINE Alu -17 295 1 232 303 40 0 chr3 18446494 18446570 -209078008 - L3 LINE CR1 -162 1415 1337 897 112 0 0 chr3 18446897 18447022 -209077556 - FLAM_A SINE Alu 0 142 18 276 329 228 10 chr3 18447678 18447976 -209076602 - L3 LINE CR1 -631 946 584 254 250 279 10 chr3 18448076 18448180 -209076398 + L3 LINE CR1 1254 1385 -192 1546 156 11 25 chr3 18448202 18448478 -209076100 - AluJo SINE Alu -36 276 5 233 333 33 22 chr3 18448487 18448577 -209076001 + L3 LINE CR1 1378 1468 -109 523 290 208 8 chr3 18448612 18448986 -209075592 + L2 LINE L2 2753 3211 -102 1837 148 10 3 chr3 18448986 18449284 -209075294 - AluJb SINE Alu -12 300 1 2231 110 3 0 chr3 18449295 18449604 -209074974 - AluSx SINE Alu -2 310 1 2399 58 0 0 chr3 18450014 18450308 -209074270 - AluY SINE Alu -17 294 1 1823 135 7 14 chr3 18450743 18451031 -209073547 + AluJb SINE Alu 1 286 -26 1686 158 26 29 chr3 18451110 18451421 -209073157 - AluJb SINE Alu -2 310 1 1894 134 40 3 chr3 18451565 18451864 -209072714 + AluJo SINE Alu 1 310 -2 180 182 0 0 chr3 18452426 18452459 -209072119 + MIR3 SINE MIR 162 194 -14 1626 92 0 0 chr3 18453755 18453972 -209070606 - AluSx SINE Alu -95 217 1 305 262 94 34 chr3 18454254 18454403 -209070175 - MIR3 SINE MIR -1 207 50 30 59 0 0 chr3 18454754 18454805 -209069773 + AT_rich Low_complexity Low_complexity 1 51 0 1027 173 0 45 chr3 18455515 18455717 -209068861 - AluJo SINE Alu -69 243 51 906 225 12 0 chr3 18456175 18456348 -209068230 - FAM SINE Alu 0 175 1 297 0 0 0 chr3 18458361 18458394 -209066184 + (TG)n Simple_repeat Simple_repeat 2 34 0 1701 142 39 3 chr3 18458406 18458688 -209065890 - AluSx SINE Alu -20 292 1 2118 82 30 36 chr3 18459648 18459817 -209064761 - AluSx SINE Alu -9 303 135 1186 47 13 0 chr3 18459817 18459966 -209064612 - L1PA4 LINE L1 0 6155 6005 2118 82 30 36 chr3 18459966 18460101 -209064477 - AluSx SINE Alu -177 135 1 1997 145 0 0 chr3 18460477 18460781 -209063797 + AluJb SINE Alu 2 305 -7 2212 102 3 0 chr3 18460781 18461084 -209063494 + AluSc SINE Alu 1 304 -5 552 289 116 31 chr3 18462505 18462730 -209061848 - MIR SINE MIR 0 262 19 830 159 0 0 chr3 18462765 18462891 -209061687 - FLAM_C SINE Alu -7 126 1 1310 207 17 14 chr3 18464316 18464606 -209059972 - AluJo SINE Alu 0 312 22 1795 42 0 0 chr3 18464610 18464825 -209059753 + AluY SINE Alu 82 296 -15 353 277 0 0 chr3 18465294 18465377 -209059201 + L1ME LINE L1 5733 5815 -306 2373 80 0 0 chr3 18465477 18465779 -209058799 + AluSq SINE Alu 1 302 -11 22 0 0 0 chr3 18467322 18467344 -209057234 + AT_rich Low_complexity Low_complexity 1 22 0 336 271 139 0 chr3 18467365 18467516 -209057062 + L1MC5 LINE L1 7720 7891 -70 1398 206 25 0 chr3 18467560 18467836 -209056742 - AluJb SINE Alu -29 283 1 345 256 17 128 chr3 18468128 18468300 -209056278 - MER5B DNA MER1_type 0 178 26 258 105 0 0 chr3 18468348 18468386 -209056192 + (CAG)n Simple_repeat Simple_repeat 2 39 0 1994 97 3 10 chr3 18468880 18469169 -209055409 + AluSg SINE Alu 1 287 -23 313 329 43 21 chr3 18469235 18469375 -209055203 - MIR SINE MIR -117 145 3 1641 141 6 56 chr3 18470039 18470220 -209054358 - AluJb SINE Alu -8 304 144 1941 134 7 7 chr3 18470220 18470525 -209054053 - AluSx SINE Alu -7 305 1 1641 141 6 56 chr3 18470525 18470663 -209053915 - AluJb SINE Alu -168 144 1 1990 108 46 23 chr3 18470714 18471019 -209053559 + AluSx SINE Alu 1 312 0 226 309 81 49 chr3 18472022 18472075 -209052503 - MIR SINE MIR -66 142 92 2231 60 0 0 chr3 18472075 18472382 -209052196 + AluY SINE Alu 2 308 0 1985 133 0 3 chr3 18472392 18472694 -209051884 + AluSq SINE Alu 1 301 -12 226 309 81 49 chr3 18472694 18472751 -209051827 - MIR SINE MIR -124 84 16 2268 89 0 0 chr3 18472911 18473213 -209051365 + AluY SINE Alu 1 302 -9 1903 98 29 11 chr3 18473247 18473545 -209051033 - AluSc SINE Alu 0 303 1 1583 176 3 24 chr3 18473589 18473879 -209050699 - AluJo SINE Alu -20 292 9 231 0 266 0 chr3 18474006 18474070 -209050508 + (CAGTT)n Simple_repeat Simple_repeat 2 82 0 409 286 176 24 chr3 18474187 18474397 -209050181 - MIR SINE MIR 0 262 21 420 300 61 22 chr3 18474646 18474876 -209049702 + L1ME LINE L1 5551 5789 -332 546 283 128 13 chr3 18475523 18475749 -209048829 + L2 LINE L2 2885 3136 -177 846 129 0 23 chr3 18475992 18476124 -209048454 + FLAM_C SINE Alu 2 130 -3 23 0 0 0 chr3 18476169 18476192 -209048386 + AT_rich Low_complexity Low_complexity 1 23 0 482 179 0 0 chr3 18476196 18476274 -209048304 - FLAM SINE Alu -14 129 52 2320 59 10 13 chr3 18476626 18476930 -209047648 + AluY SINE Alu 1 303 -8 366 95 18 28 chr3 18477067 18477142 -209047436 - Alu SINE Alu -249 50 1 319 355 24 24 chr3 18477142 18477308 -209047270 - L2 LINE L2 -276 2996 2831 867 194 61 0 chr3 18477397 18477562 -209047016 + FAM SINE Alu 1 175 0 201 256 0 0 chr3 18477566 18477605 -209046973 + polypurine Low_complexity Low_complexity 3 41 0 806 103 16 54 chr3 18477605 18477790 -209046788 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 795 107 51 16 chr3 18477790 18478170 -209046408 + GA-rich Low_complexity Low_complexity 1 393 0 1862 119 28 3 chr3 18478616 18478901 -209045677 + AluJo SINE Alu 5 296 -16 448 260 32 26 chr3 18479090 18479244 -209045334 - MIR SINE MIR -43 219 65 448 291 75 20 chr3 18479370 18479569 -209045009 - MLT1K LTR MaLR -343 245 36 452 203 17 34 chr3 18479665 18479783 -209044795 - LTR33 LTR ERVL -7 514 399 774 241 132 34 chr3 18479814 18480109 -209044469 - LTR33 LTR ERVL -197 324 1 1384 179 108 14 chr3 18480782 18480806 -209043772 - MLT1F LTR MaLR -211 331 311 1642 212 50 16 chr3 18480806 18481183 -209043395 + MLT1B LTR MaLR 1 390 0 1384 179 108 14 chr3 18481183 18481455 -209043123 - MLT1F LTR MaLR -231 311 7 289 267 100 0 chr3 18481895 18481985 -209042593 - MIR3 SINE MIR -23 185 87 526 317 35 20 chr3 18481995 18482197 -209042381 - MIR SINE MIR -10 252 48 447 220 40 90 chr3 18482672 18482849 -209041729 - MIR3 SINE MIR -12 196 29 349 353 53 11 chr3 18482958 18483145 -209041433 + MIR SINE MIR 2 196 -66 765 148 23 0 chr3 18483146 18483274 -209041304 + FLAM_A SINE Alu 2 132 -1 611 109 10 0 chr3 18483357 18483458 -209041120 - L1MA8 LINE L1 -1 6290 6189 511 265 40 13 chr3 18483694 18483845 -209040733 + MIR SINE MIR 36 190 -72 480 293 26 47 chr3 18484000 18484232 -209040346 - MIR SINE MIR -16 246 20 242 177 242 0 chr3 18484251 18484313 -209040265 + L2 LINE L2 3194 3270 -2 187 235 196 0 chr3 18486624 18486675 -209037903 + L2 LINE L2 3230 3290 -23 * 196 174 22 65 chr3 18486643 18486689 -209037889 + L2 LINE L2 3217 3260 -12 1782 167 3 7 chr3 18486725 18487019 -209037559 + AluJo SINE Alu 1 293 -19 1694 115 84 0 chr3 18487025 18487310 -209037268 + AluSg SINE Alu 1 307 0 241 308 95 53 chr3 18487367 18487536 -209037042 + L2 LINE L2 2679 2854 -460 714 284 42 21 chr3 18488624 18488863 -209035715 - MIR SINE MIR -2 260 17 330 329 21 14 chr3 18488885 18489025 -209035553 + MIR3 SINE MIR 14 154 -54 1757 147 3 7 chr3 18489074 18489360 -209035218 + AluJb SINE Alu 1 285 -27 827 195 0 12 chr3 18489393 18489562 -209035016 + L1MB7 LINE L1 6007 6173 -11 285 300 80 0 chr3 18489732 18489832 -209034746 + L2 LINE L2 3206 3313 0 302 277 98 27 chr3 18489871 18489983 -209034595 + L2 LINE L2 3151 3270 -2 248 196 0 20 chr3 18490063 18490114 -209034464 - LTR67 LTR ERVL 0 557 508 1891 114 0 0 chr3 18490968 18491231 -209033347 + AluSx SINE Alu 1 263 -49 407 228 177 32 chr3 18491285 18491443 -209033135 - MIR SINE MIR -62 200 20 190 279 132 0 chr3 18491458 18491526 -209033052 + MIR3 SINE MIR 78 154 -54 216 236 6 35 chr3 18492403 18492461 -209032117 + MIR SINE MIR 95 154 -61 2379 65 0 3 chr3 18492570 18492878 -209031700 - AluY SINE Alu -4 307 1 305 296 74 22 chr3 18492878 18493013 -209031565 + MIR3 SINE MIR 64 205 -3 225 320 120 51 chr3 18493394 18493827 -209030751 + L2 LINE L2 2652 3113 -159 920 128 0 7 chr3 18493833 18493974 -209030604 - AluJb SINE Alu -172 140 1 1361 119 5 5 chr3 18494757 18494967 -209029611 - AluJb SINE Alu -4 308 99 3383 167 21 41 chr3 18495695 18495771 -209028807 + L1MB7 LINE L1 5413 5489 -695 2133 109 3 3 chr3 18495771 18496074 -209028504 + AluSx SINE Alu 1 303 -9 3383 167 21 41 chr3 18496074 18496709 -209027869 + L1MB7 LINE L1 5489 6110 -74 2054 103 0 62 chr3 18496771 18497092 -209027486 - AluSx SINE Alu -11 301 1 400 82 66 0 chr3 18497095 18497156 -209027422 + L1MB7 LINE L1 6114 6178 -6 408 273 251 0 chr3 18497662 18497845 -209026733 - MIR SINE MIR 0 262 34 473 205 9 0 chr3 18498180 18498292 -209026286 + GA-rich Low_complexity Low_complexity 1 113 0 2056 86 65 0 chr3 18498526 18498818 -209025760 - AluSx SINE Alu -1 311 1 2277 90 0 6 chr3 18498929 18499241 -209025337 + AluSg SINE Alu 1 310 0 193 322 147 0 chr3 18499345 18499488 -209025090 - MIR SINE MIR 0 262 99 2058 124 0 0 chr3 18499783 18500081 -209024497 + AluSx SINE Alu 1 298 -14 214 300 127 32 chr3 18500258 18500478 -209024100 - L2 LINE L2 -69 3203 2963 261 301 79 4 chr3 18500547 18500699 -209023879 - MIR SINE MIR -55 153 35 255 228 22 76 chr3 18501095 18501187 -209023391 + MIR SINE MIR 65 151 -57 478 259 42 35 chr3 18501409 18501637 -209022941 - MIR3 SINE MIR -25 237 11 595 341 18 27 chr3 18501980 18502203 -209022375 - MIR SINE MIR -40 222 2 411 213 74 9 chr3 18502225 18502333 -209022245 + MER5B DNA MER1_type 1 115 -63 424 239 69 11 chr3 18502851 18503003 -209021575 - L1MC/D LINE L1 -916 5443 5313 1684 148 0 11 chr3 18503436 18503713 -209020865 - AluJb SINE Alu -34 278 5 395 314 131 21 chr3 18504392 18504675 -209019903 + L2 LINE L2 2848 3161 -111 455 220 107 94 chr3 18504761 18504920 -209019658 + MIR3 SINE MIR 4 164 -44 321 259 136 5 chr3 18505196 18505341 -209019237 + MIR SINE MIR 25 185 -77 253 265 132 29 chr3 18505416 18505552 -209019026 + MIR SINE MIR 91 240 -22 614 262 14 0 chr3 18506409 18506563 -209018015 + MIR SINE MIR 39 193 -60 1263 176 0 0 chr3 18507703 18507919 -209016659 + AluJo SINE Alu 85 300 -12 289 214 12 71 chr3 18507943 18508027 -209016551 - L1ME LINE L1 -356 5814 5736 1136 134 0 0 chr3 18508028 18508200 -209016378 - FRAM SINE Alu -7 169 1 2228 110 0 0 chr3 18508396 18508704 -209015874 - AluSx SINE Alu -1 311 4 485 308 31 13 chr3 18508707 18508866 -209015712 + MIR SINE MIR 61 222 -40 264 161 113 0 chr3 18509096 18509158 -209015420 + MIR SINE MIR 119 187 -75 195 309 106 16 chr3 18509456 18509644 -209014934 + L2 LINE L2 2725 2929 -385 2083 109 13 16 chr3 18509865 18510178 -209014400 - AluSx SINE Alu 0 312 1 416 277 208 0 chr3 18510260 18510419 -209014159 + MIR SINE MIR 58 249 -13 340 207 126 0 chr3 18510427 18510514 -209014064 - MER53 DNA DNA 0 189 92 3415 162 41 25 chr3 18510587 18511228 -209013350 - MER82 DNA MER2_type -1 652 2 189 0 0 0 chr3 18511242 18511263 -209013315 + (TG)n Simple_repeat Simple_repeat 2 22 0 530 196 62 84 chr3 18511300 18511470 -209013108 + L1MC5 LINE L1 7688 7853 -108 2150 102 3 3 chr3 18511470 18511765 -209012813 - AluSp SINE Alu -18 295 1 530 196 62 84 chr3 18511765 18511819 -209012759 + L1MC5 LINE L1 7853 7907 -54 201 162 0 0 chr3 18511895 18511932 -209012646 + T-rich Low_complexity Low_complexity 1 37 0 465 331 41 0 chr3 18511981 18512153 -209012425 + MIR3 SINE MIR 24 202 -6 2051 96 0 30 chr3 18512438 18512741 -209011837 + AluSx SINE Alu 1 294 -18 459 296 62 6 chr3 18512786 18512948 -209011630 - L2 LINE L2 -183 3089 2919 240 301 79 10 chr3 18513199 18513332 -209011246 - MIR SINE MIR -63 145 5 246 345 0 0 chr3 18514306 18514393 -209010185 - MIR SINE MIR -19 243 157 335 227 57 23 chr3 18514801 18514889 -209009689 + MIR SINE MIR 108 198 -64 277 210 32 0 chr3 18514930 18514992 -209009586 - MER5B DNA MER1_type -63 115 52 1047 161 62 13 chr3 18515213 18515491 -209009087 - MER2 DNA MER2_type 0 345 2 2618 183 67 17 chr3 18515881 18516460 -209008118 - L1MB7 LINE L1 0 6184 5577 234 244 128 13 chr3 18516462 18516540 -209008038 - MIR3 SINE MIR -54 154 68 266 215 182 25 chr3 18518163 18518284 -209006294 + MIR3 SINE MIR 4 143 -65 747 258 131 10 chr3 18518341 18518539 -209006039 - MIR SINE MIR -29 233 12 196 202 236 56 chr3 18518691 18518780 -209005798 + L2 LINE L2 3208 3312 -1 852 264 39 0 chr3 18519926 18520180 -209004398 - L1MB7 LINE L1 0 6184 5921 2066 133 0 3 chr3 18520334 18520636 -209003942 - AluSx SINE Alu -11 301 1 1711 174 75 3 chr3 18521090 18521411 -209003167 - MER2 DNA MER2_type 0 344 1 859 205 60 10 chr3 18522065 18522265 -209002313 + L1MC4a LINE L1 5408 5617 -2191 2341 202 42 8 chr3 18522275 18522775 -209001803 - L1MB5 LINE L1 -167 6007 5491 2285 84 0 0 chr3 18522791 18523087 -209001491 + AluSg SINE Alu 1 296 -14 24 0 0 0 chr3 18523109 18523133 -209001445 + AT_rich Low_complexity Low_complexity 1 24 0 1235 205 12 0 chr3 18523149 18523408 -209001170 - L1MB5 LINE L1 -970 5176 4915 765 240 47 34 chr3 18523407 18523640 -209000938 + L1MC4a LINE L1 5600 5835 -1973 * 1796 131 0 51 chr3 18523731 18524045 -209000533 - AluSx SINE Alu -14 298 1 2256 105 0 0 chr3 18524188 18524493 -209000085 + AluSx SINE Alu 1 305 -7 1520 169 0 4 chr3 18524620 18524875 -208999703 - AluJb SINE Alu -58 254 1 235 245 0 0 chr3 18524950 18525003 -208999575 - MLT1H LTR MaLR -13 536 484 234 321 92 9 chr3 18525067 18525176 -208999402 - MIR3 SINE MIR -45 163 46 344 273 145 29 chr3 18525563 18525735 -208998843 + MER117 DNA MER1_type 6 197 0 1333 195 30 34 chr3 18527122 18527420 -208997158 - MLT1C LTR MaLR 0 467 171 372 207 264 8 chr3 18527470 18527591 -208996987 - MLT1C LTR MaLR -264 203 52 824 139 16 0 chr3 18528275 18528404 -208996174 - FLAM_C SINE Alu -12 131 1 402 321 107 0 chr3 18528640 18528771 -208995807 - L2 LINE L2 -2 3270 3126 413 282 67 26 chr3 18528818 18529013 -208995565 - MIR SINE MIR -1 261 59 447 317 134 14 chr3 18529034 18529265 -208995313 - MIR SINE MIR -7 255 13 454 243 182 60 chr3 18529997 18530196 -208994382 - MIR SINE MIR 0 262 38 510 212 34 25 chr3 18530565 18530683 -208993895 - MIR SINE MIR -83 179 61 421 107 333 0 chr3 18530974 18531049 -208993529 - U6 snRNA snRNA -7 100 1 1884 116 40 7 chr3 18531608 18531910 -208992668 + AluSx SINE Alu 1 312 0 231 61 0 0 chr3 18532013 18532046 -208992532 + (T)n Simple_repeat Simple_repeat 1 33 0 428 228 55 55 chr3 18532093 18532136 -208992442 - L1ME4a LINE L1 -16 6105 6063 2132 121 3 0 chr3 18532136 18532443 -208992135 + AluSc SINE Alu 1 308 -1 428 228 55 55 chr3 18532443 18532544 -208992034 - L1ME4a LINE L1 -57 6064 5961 24 0 0 0 chr3 18533313 18533337 -208991241 + AT_rich Low_complexity Low_complexity 1 24 0 1280 157 4 30 chr3 18533644 18533879 -208990699 + AluJo SINE Alu 1 229 -83 1640 141 74 0 chr3 18534083 18534352 -208990226 + AluJo SINE Alu 1 289 -23 2156 104 17 0 chr3 18534851 18535149 -208989429 + AluSx SINE Alu 1 303 -9 842 205 6 0 chr3 18535164 18535330 -208989248 + AluJb SINE Alu 137 303 -9 380 206 0 41 chr3 18535431 18535528 -208989050 - L1MB8 LINE L1 -1 6177 6085 1531 173 0 0 chr3 18535657 18535906 -208988672 + AluJb SINE Alu 1 249 -63 2188 82 0 0 chr3 18536257 18536561 -208988017 + AluSg SINE Alu 1 304 0 505 248 24 16 chr3 18536562 18536687 -208987891 - MER3 DNA MER1_type -71 138 13 524 276 46 7 chr3 18536708 18536860 -208987718 + MIR SINE MIR 98 255 -7 302 314 0 0 chr3 18536940 18537010 -208987568 - L2 LINE L2 -15 3298 3229 265 267 128 0 chr3 18537080 18537166 -208987412 + L2 LINE L2 3217 3313 0 932 180 0 11 chr3 18538202 18538380 -208986198 - FRAM SINE Alu -8 168 1 1939 150 3 0 chr3 18538538 18538845 -208985733 - AluSx SINE Alu -4 308 1 832 136 0 0 chr3 18540439 18540557 -208984021 - 5S rRNA rRNA -1 120 3 254 263 127 25 chr3 18540762 18540880 -208983698 + L1P LINE L1 4883 5012 -1134 1836 161 0 0 chr3 18540915 18541207 -208983371 - AluJb SINE Alu -15 297 6 261 196 0 36 chr3 18541760 18541816 -208982762 + L2 LINE L2 3234 3287 -26 21 0 0 0 chr3 18542387 18542408 -208982170 + AT_rich Low_complexity Low_complexity 1 21 0 599 108 0 0 chr3 18542690 18542773 -208981805 + AluS SINE Alu 2 84 -228 293 254 173 76 chr3 18542800 18542997 -208981581 - MIR SINE MIR -46 216 1 441 319 296 2 chr3 18543325 18543830 -208980748 - L2 LINE L2 -6 3307 2637 593 120 54 0 chr3 18544058 18544150 -208980428 + U6 snRNA snRNA 8 104 -3 * 1251 181 127 39 chr3 18544148 18544486 -208980092 - Charlie1b DNA MER1_type -155 368 1 2244 67 7 10 chr3 18545488 18545788 -208978790 + AluY SINE Alu 1 299 -12 378 0 0 0 chr3 18545792 18545834 -208978744 + (TG)n Simple_repeat Simple_repeat 1 42 0 455 288 90 42 chr3 18546315 18546411 -208978167 - MIR SINE MIR -16 246 156 2116 81 0 36 chr3 18546411 18546720 -208977858 + AluY SINE Alu 1 298 -13 455 288 90 42 chr3 18546720 18546835 -208977743 - MIR SINE MIR -106 156 25 606 175 203 89 chr3 18547871 18548162 -208976416 - MER33 DNA MER1_type 0 324 1 561 121 0 0 chr3 18548189 18548272 -208976306 + AluY SINE Alu 217 299 -12 2222 89 3 3 chr3 18548809 18549111 -208975467 + AluY SINE Alu 1 302 -9 229 244 37 85 chr3 18549139 18549221 -208975357 + MIR SINE MIR 77 154 -108 620 296 9 66 chr3 18549228 18549348 -208975230 - MIR SINE MIR 0 262 159 1983 116 3 3 chr3 18549348 18549642 -208974936 - AluY SINE Alu -17 294 1 620 296 9 66 chr3 18549642 18549747 -208974831 - MIR SINE MIR -103 159 50 2489 110 0 21 chr3 18549832 18549853 -208974725 - L1PA14 LINE L1 -2 6159 6139 2198 93 14 0 chr3 18549853 18550143 -208974435 + AluSx SINE Alu 1 294 -18 2489 110 0 21 chr3 18550143 18550494 -208974084 - L1PA14 LINE L1 -22 6139 5795 668 262 48 27 chr3 18550540 18550727 -208973851 - L2 LINE L2 -6 3307 3117 468 157 95 48 chr3 18550738 18550779 -208973799 + MER44D DNA MER2_type 44 82 -2409 1957 150 7 0 chr3 18550779 18551073 -208973505 + AluSx SINE Alu 2 297 -15 2483 72 13 0 chr3 18551075 18551382 -208973196 + AluY SINE Alu 1 311 0 468 157 95 48 chr3 18551382 18551484 -208973094 + MER44D DNA MER2_type 82 467 -142 186 167 0 0 chr3 18551579 18551615 -208972963 + (TGGA)n Simple_repeat Simple_repeat 2 37 0 264 283 57 38 chr3 18552276 18552435 -208972143 - MIR SINE MIR -35 227 66 2293 115 0 19 chr3 18552869 18553183 -208971395 - AluSx SINE Alu -2 310 3 311 256 87 29 chr3 18553265 18553437 -208971141 - L1MC4 LINE L1 -169 7873 7692 824 128 15 15 chr3 18553437 18553570 -208971008 - AluJo SINE Alu -173 139 7 1312 198 116 75 chr3 18553626 18554066 -208970512 - MLT1C LTR MaLR -4 463 6 418 260 120 41 chr3 18554072 18554085 -208970493 - L1MC4 LINE L1 -413 7629 7618 2229 125 0 3 chr3 18554085 18554389 -208970189 - AluSx SINE Alu -9 303 1 418 260 120 41 chr3 18554389 18554617 -208969961 - L1MC4 LINE L1 -424 7618 7369 233 222 49 49 chr3 18554796 18554877 -208969701 - L1MD3 LINE L1 -855 7140 7060 1833 157 13 38 chr3 18554890 18555208 -208969370 - AluSx SINE Alu 0 312 3 909 153 0 0 chr3 18555209 18555340 -208969238 - Tigger3(Golem) DNA MER2_type -2852 177 47 2526 137 59 23 chr3 18555377 18555402 -208969176 + Tigger3(Golem) DNA MER2_type 2540 2563 -466 755 154 0 0 chr3 18555402 18555519 -208969059 + FLAM_C SINE Alu 1 117 -16 2526 137 59 23 chr3 18555519 18555966 -208968612 + Tigger3(Golem) DNA MER2_type 2563 3029 0 308 302 63 63 chr3 18556268 18556457 -208968121 - MIR3 SINE MIR -13 195 7 939 9 0 0 chr3 18556789 18556894 -208967684 - AluYa5/8 SINE Alu -2 308 204 312 263 54 46 chr3 18556960 18557152 -208967426 - MLT1J1 LTR MaLR -7 443 243 * 476 252 19 0 chr3 18557147 18557254 -208967324 - MLT1J1 LTR MaLR -337 109 1 1688 181 3 0 chr3 18557784 18558071 -208966507 + AluJb SINE Alu 1 288 -24 2407 86 0 7 chr3 18558530 18558832 -208965746 + AluSg1 SINE Alu 1 300 -9 347 274 43 8 chr3 18559659 18559776 -208964802 - MIR SINE MIR -107 155 35 802 166 114 36 chr3 18560107 18560240 -208964338 - MER6B DNA MER2_type -656 209 55 2190 112 67 14 chr3 18560240 18560596 -208963982 - THE1C LTR MaLR 0 375 1 802 166 114 36 chr3 18560596 18560655 -208963923 - MER6B DNA MER2_type -810 55 2 198 235 51 71 chr3 18562312 18562410 -208962168 + MIR3 SINE MIR 112 207 -1 1862 155 16 29 chr3 18562724 18563034 -208961544 + AluJb SINE Alu 1 306 -6 306 291 45 0 chr3 18563743 18563877 -208960701 + MIR SINE MIR 53 192 -70 2258 57 4 11 chr3 18563890 18564171 -208960407 + AluY SINE Alu 23 301 -10 1080 110 43 0 chr3 18564172 18564336 -208960242 + AluSg/x SINE Alu 131 301 -9 2187 81 0 0 chr3 18564895 18565153 -208959425 - AluSq SINE Alu -29 284 27 385 266 91 15 chr3 18565188 18565378 -208959200 + MIR SINE MIR 37 239 -23 180 0 0 0 chr3 18565601 18565621 -208958957 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2275 94 0 10 chr3 18566066 18566364 -208958214 + AluSq SINE Alu 1 295 -18 1613 158 52 7 chr3 18566501 18566773 -208957805 + AluJb SINE Alu 27 310 -2 437 296 148 0 chr3 18567000 18567162 -208957416 + MIR SINE MIR 2 187 -75 1233 192 103 12 chr3 18567572 18567901 -208956677 - MER93a LTR ERV1 0 402 1 266 224 122 31 chr3 18567918 18568016 -208956562 - MARNA DNA Mariner -236 350 244 2291 109 0 0 chr3 18568477 18568780 -208955798 - AluSx SINE Alu -9 303 1 2395 104 3 0 chr3 18569122 18569431 -208955147 - AluSp SINE Alu -3 310 1 2213 108 7 19 chr3 18569938 18570245 -208954333 + AluSx SINE Alu 1 303 -9 2032 136 17 0 chr3 18570563 18570864 -208953714 - AluSx SINE Alu -6 306 1 192 40 0 0 chr3 18572057 18572082 -208952496 + (A)n Simple_repeat Simple_repeat 1 25 0 289 279 72 9 chr3 18572154 18572265 -208952313 + MIR SINE MIR 24 141 -67 2021 141 3 0 chr3 18572653 18572944 -208951634 + AluSx SINE Alu 2 293 -19 2062 122 0 23 chr3 18572951 18573255 -208951323 + AluSx SINE Alu 1 297 -15 2242 90 10 20 chr3 18573739 18574040 -208950538 + AluSq SINE Alu 1 298 -15 1549 161 57 11 chr3 18575159 18575438 -208949140 - AluSg SINE Alu -18 292 1 481 245 77 13 chr3 18575672 18575856 -208948722 + L1ME3A LINE L1 5959 6162 -2 316 130 0 0 chr3 18575868 18575922 -208948656 - L1MA3 LINE L1 0 6305 6252 2344 100 0 19 chr3 18575922 18576233 -208948345 - AluSx SINE Alu -7 305 1 274 136 0 0 chr3 18576671 18576715 -208947863 + Charlie4 DNA MER1_type 1864 1907 -54 252 247 103 41 chr3 18577111 18577208 -208947370 + MIR SINE MIR 82 184 -78 27 0 0 0 chr3 18579082 18579109 -208945469 + AT_rich Low_complexity Low_complexity 1 27 0 180 0 0 0 chr3 18579240 18579260 -208945318 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 21 57 0 0 chr3 18581877 18581912 -208942666 + AT_rich Low_complexity Low_complexity 1 35 0 2047 145 17 0 chr3 18582308 18582605 -208941973 - AluSx SINE Alu -10 302 1 1152 149 123 29 chr3 18583312 18583588 -208940990 - AluJo SINE Alu 0 302 1 1619 146 83 88 chr3 18583635 18583807 -208940771 + L1MB7 LINE L1 5736 5907 -277 1893 175 27 0 chr3 18583807 18584145 -208940433 - MER7A DNA MER2_type 0 346 2 1619 146 83 88 chr3 18584145 18584258 -208940320 + L1MB7 LINE L1 5907 6019 -165 2267 158 41 14 chr3 18584258 18584676 -208939902 + MSTB1 LTR MaLR 4 432 0 1619 146 83 88 chr3 18584676 18584821 -208939757 + L1MB7 LINE L1 6019 6165 -19 1416 164 12 12 chr3 18585016 18585260 -208939318 + AluJo SINE Alu 50 293 -19 2255 112 0 10 chr3 18585266 18585571 -208939007 - AluSg SINE Alu -8 302 1 25 0 0 0 chr3 18585580 18585605 -208938973 + AT_rich Low_complexity Low_complexity 1 25 0 1967 154 3 3 chr3 18585805 18586104 -208938474 - AluSx SINE Alu -13 299 1 189 107 0 0 chr3 18586455 18586483 -208938095 + (GGGGA)n Simple_repeat Simple_repeat 1 28 0 1764 130 4 29 chr3 18587139 18587245 -208937333 + AluSx SINE Alu 31 138 -174 2103 127 13 3 chr3 18587245 18587552 -208937026 + AluSx SINE Alu 1 310 -2 1764 130 4 29 chr3 18587552 18587722 -208936856 + AluSx SINE Alu 138 300 -12 907 130 0 8 chr3 18587816 18587947 -208936631 + FRAM SINE Alu 28 157 -19 680 115 34 115 chr3 18588219 18588367 -208936211 + AluJo SINE Alu 1 136 -176 2270 109 0 3 chr3 18588972 18589276 -208935302 - AluSc SINE Alu -6 303 1 2402 84 16 0 chr3 18590327 18590635 -208933943 - AluSq SINE Alu 0 313 1 868 158 11 92 chr3 18591186 18591370 -208933208 - AluJb SINE Alu -9 303 135 423 0 0 0 chr3 18591373 18591420 -208933158 + (TG)n Simple_repeat Simple_repeat 2 48 0 1186 103 0 27 chr3 18591567 18591751 -208932827 - AluY SINE Alu -17 294 116 1089 75 0 8 chr3 18591792 18591925 -208932653 - AluYb8 SINE Alu -186 132 1 2028 106 40 7 chr3 18591937 18592212 -208932366 - AluSq SINE Alu -23 290 7 2017 168 0 0 chr3 18592301 18592610 -208931968 + AluJb SINE Alu 1 309 -3 12366 48 6 5 chr3 18592711 18595023 -208929555 - L1PA5 LINE L1 0 6154 3844 1505 152 5 0 chr3 18595142 18595359 -208929219 - AluSx SINE Alu -92 220 3 560 167 70 0 chr3 18595686 18595800 -208928778 + FAM SINE Alu 29 150 -35 1941 97 93 14 chr3 18595962 18596240 -208928338 + AluSq SINE Alu 1 300 -13 25 0 0 0 chr3 18596251 18596276 -208928302 + AT_rich Low_complexity Low_complexity 1 25 0 1516 195 0 14 chr3 18596283 18596580 -208927998 + AluJo SINE Alu 1 293 -19 2314 113 7 0 chr3 18596721 18597030 -208927548 + AluSx SINE Alu 2 312 0 2015 103 39 14 chr3 18597816 18598097 -208926481 + AluSq SINE Alu 1 288 -25 555 174 0 0 chr3 18598158 18598244 -208926334 + AluJ/FLAM SINE Alu 2 87 -225 1228 153 20 15 chr3 18598244 18598440 -208926138 + AluJo SINE Alu 21 217 -95 1465 199 30 0 chr3 18598756 18599022 -208925556 - AluSx SINE Alu -38 274 1 22 35 0 0 chr3 18599152 18599181 -208925397 + AT_rich Low_complexity Low_complexity 1 29 0 349 214 179 21 chr3 18599435 18599575 -208925003 - MIR SINE MIR -20 242 81 1768 165 13 16 chr3 18599758 18600061 -208924517 - AluJo SINE Alu -10 302 1 619 246 242 20 chr3 18600288 18600766 -208923812 - L2 LINE L2 0 3313 2720 1460 124 5 10 chr3 18600789 18600998 -208923580 - AluSg/x SINE Alu -18 294 87 816 179 35 7 chr3 18601018 18601163 -208923415 + AluJb SINE Alu 3 151 -161 219 186 34 34 chr3 18601187 18601246 -208923332 - L2 LINE L2 -1017 2297 2239 193 244 61 130 chr3 18601239 18601295 -208923283 + MIR SINE MIR 133 180 -82 * 2368 64 0 3 chr3 18601295 18601578 -208923000 + AluY SINE Alu 1 282 -29 190 0 0 0 chr3 18601578 18601599 -208922979 + (CAAAA)n Simple_repeat Simple_repeat 2 170 0 193 244 61 130 chr3 18601599 18601656 -208922922 + MIR SINE MIR 180 239 -23 387 363 41 7 chr3 18601657 18601803 -208922775 + MER91A DNA MER1_type 14 164 -32 27 49 0 0 chr3 18601983 18602024 -208922554 + AT_rich Low_complexity Low_complexity 1 41 0 2104 101 14 0 chr3 18602024 18602320 -208922258 + AluSq SINE Alu 1 300 -13 521 190 30 0 chr3 18602712 18602812 -208921766 + U13 snRNA snRNA 1 103 -1 401 233 22 11 chr3 18602844 18602934 -208921644 + HAL1 LINE L1 446 536 -1971 543 271 18 18 chr3 18603019 18603189 -208921389 + HAL1 LINE L1 744 913 -1594 1478 154 20 43 chr3 18603198 18603497 -208921081 + AluJb SINE Alu 21 312 0 949 247 211 36 chr3 18603499 18603632 -208920946 + HAL1 LINE L1 1296 1404 -1103 2203 85 13 7 chr3 18603632 18603939 -208920639 + AluSq SINE Alu 1 309 -4 949 247 211 36 chr3 18603939 18604124 -208920454 + HAL1 LINE L1 1404 1555 -952 2042 108 7 13 chr3 18604124 18604429 -208920149 - AluSx SINE Alu -9 303 1 949 247 211 36 chr3 18604429 18604579 -208919999 + HAL1 LINE L1 1555 1847 -660 240 233 27 27 chr3 18604662 18604735 -208919843 + GA-rich Low_complexity Low_complexity 4 76 0 347 280 25 3 chr3 18604869 18605019 -208919559 - MER113 DNA MER1_type? 0 521 316 1927 138 24 0 chr3 18605029 18605327 -208919251 + AluSx SINE Alu 8 312 0 2040 124 3 0 chr3 18605333 18605639 -208918939 + AluSq SINE Alu 1 307 -6 2373 62 0 0 chr3 18605670 18605962 -208918616 + AluY SINE Alu 1 292 -19 2187 110 0 0 chr3 18605982 18606283 -208918295 + AluSx SINE Alu 1 301 -11 255 196 89 0 chr3 18606284 18606340 -208918238 + AluSp SINE Alu 136 196 -107 524 158 32 21 chr3 18606340 18606435 -208918143 + FLAM_C SINE Alu 35 130 -13 1979 149 0 3 chr3 18606502 18606810 -208917768 + AluJb SINE Alu 1 307 -5 271 373 0 0 chr3 18606967 18607069 -208917509 + MIR SINE MIR 141 242 -20 896 132 14 0 chr3 18607351 18607495 -208917083 - AluSx SINE Alu -118 194 49 1753 126 8 0 chr3 18607589 18607850 -208916728 + AluSx SINE Alu 42 304 -8 576 282 69 46 chr3 18607863 18608228 -208916350 + L2 LINE L2 2734 3311 -2 798 97 132 0 chr3 18608735 18608849 -208915729 + AluSq/x SINE Alu 5 133 -179 901 47 0 0 chr3 18608915 18609022 -208915556 - L1P LINE L1 -2280 3866 3760 1364 175 0 12 chr3 18609183 18609440 -208915138 + AluJb SINE Alu 43 296 -16 671 173 0 65 chr3 18609716 18609855 -208914723 + FLAM_C SINE Alu 1 130 -3 2038 78 32 11 chr3 18609926 18610208 -208914370 - AluSx SINE Alu -24 288 1 3624 160 17 8 chr3 18610230 18610868 -208913710 + L1MB4 LINE L1 5477 6120 -60 1937 147 0 0 chr3 18611545 18611838 -208912740 + AluSq SINE Alu 9 301 -12 2051 89 20 10 chr3 18612311 18612603 -208911975 + AluSp SINE Alu 1 295 -18 339 171 66 0 chr3 18612603 18612679 -208911899 - L1MB8 LINE L1 -57 6121 6041 228 35 0 0 chr3 18612680 18612709 -208911869 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 544 169 0 0 chr3 18613450 18613539 -208911039 - AluJ/FLAM SINE Alu -222 90 2 1630 175 3 7 chr3 18613816 18614113 -208910465 - AluJb SINE Alu -16 296 1 1011 112 35 231 chr3 18614115 18614282 -208910296 - Tigger2 DNA MER2_type -2175 543 345 1971 142 0 0 chr3 18614282 18614577 -208910001 - AluSx SINE Alu -17 295 1 1011 112 35 231 chr3 18614577 18614624 -208909954 - Tigger2 DNA MER2_type -2373 345 419 1736 108 59 35 chr3 18614624 18614911 -208909667 - AluSx SINE Alu -18 294 1 1011 112 35 231 chr3 18614911 18615042 -208909536 - Tigger2 DNA MER2_type -2298 420 265 2109 112 0 0 chr3 18615042 18615336 -208909242 - AluSg SINE Alu -16 294 1 1100 143 0 0 chr3 18615338 18615513 -208909065 - AluSg/x SINE Alu -7 303 129 398 19 0 19 chr3 18615513 18615565 -208909013 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2053 106 3 0 chr3 18615567 18615849 -208908729 - AluSq SINE Alu -30 283 1 1918 102 0 63 chr3 18615910 18616225 -208908353 - AluSx SINE Alu -17 295 1 201 305 0 0 chr3 18616802 18616861 -208907717 + MIR SINE MIR 204 262 0 1356 166 20 71 chr3 18617243 18617403 -208907175 - AluJb SINE Alu -19 293 153 2239 93 0 3 chr3 18617403 18617713 -208906865 - AluSg SINE Alu -1 309 1 1356 166 20 71 chr3 18617713 18617847 -208906731 - AluJb SINE Alu -159 153 14 288 0 0 0 chr3 18617956 18617988 -208906590 + (TG)n Simple_repeat Simple_repeat 1 32 0 1506 175 4 7 chr3 18617993 18618262 -208906316 - AluJo SINE Alu -44 268 1 2241 97 3 0 chr3 18618435 18618745 -208905833 - AluSp SINE Alu -2 311 1 911 176 19 0 chr3 18618820 18618979 -208905599 - AluSg/x SINE Alu -18 294 133 1549 179 29 4 chr3 18619948 18620259 -208904319 - AluJb SINE Alu 0 318 1 2432 57 0 0 chr3 18620263 18620563 -208904015 - AluY SINE Alu -11 300 1 930 196 41 5 chr3 18620707 18620927 -208903651 - MER50 LTR ERV1 -14 720 493 289 172 0 17 chr3 18620919 18620977 -208903601 - AluJo SINE Alu -159 143 87 * 2045 138 105 5 chr3 18620978 18621349 -208903229 - L1MC1 LINE L1 -228 6105 5698 932 167 139 0 chr3 18621354 18621569 -208903009 - L1MB8 LINE L1 -140 6038 5794 1003 194 38 0 chr3 18621574 18621785 -208902793 - Tigger7 DNA MER2_type -1 2486 2268 2194 106 3 0 chr3 18621786 18622097 -208902481 + AluSp SINE Alu 1 312 -1 2077 96 0 0 chr3 18622631 18622911 -208901667 + AluSx SINE Alu 21 300 -12 1604 158 0 55 chr3 18623769 18624079 -208900499 - AluJb SINE Alu -19 293 1 1728 122 4 0 chr3 18624160 18624407 -208900171 + AluSg SINE Alu 1 248 -62 1889 135 13 10 chr3 18624887 18625198 -208899380 + AluSx SINE Alu 1 312 0 818 140 0 44 chr3 18625369 18625505 -208899073 + FLAM_C SINE Alu 2 131 -2 1633 151 3 43 chr3 18625510 18625834 -208898744 + AluJo SINE Alu 2 312 0 23 0 0 0 chr3 18625852 18625875 -208898703 + AT_rich Low_complexity Low_complexity 1 23 0 262 278 176 56 chr3 18626054 18626270 -208898308 + L2 LINE L2 2837 3078 -194 191 280 133 0 chr3 18627997 18628072 -208896506 + MIR SINE MIR 55 139 -123 374 335 42 11 chr3 18628201 18628392 -208896186 + L1ME LINE L1 5599 5795 -326 2289 74 0 0 chr3 18628474 18628773 -208895805 + AluSx SINE Alu 14 312 0 1283 87 0 6 chr3 18628778 18628950 -208895628 + AluSp SINE Alu 131 301 -12 2122 92 3 23 chr3 18628955 18629093 -208895485 + AluSx SINE Alu 1 140 -172 2419 60 0 0 chr3 18629093 18629392 -208895186 + AluY SINE Alu 1 299 -12 2122 92 3 23 chr3 18629392 18629559 -208895019 + AluSx SINE Alu 140 300 -12 191 299 234 0 chr3 18629670 18629777 -208894801 - L2 LINE L2 -22 3291 3160 1249 200 43 37 chr3 18629786 18630086 -208894492 + AluJo SINE Alu 1 302 0 957 98 0 0 chr3 18630153 18630286 -208894292 + AluY SINE Alu 1 133 -178 2465 52 0 10 chr3 18630303 18630611 -208893967 + AluY SINE Alu 1 305 -6 1994 101 25 0 chr3 18630668 18630973 -208893605 + AluSp SINE Alu 1 312 0 270 184 197 0 chr3 18630974 18631050 -208893528 + MIR SINE MIR 136 226 -36 * 785 279 40 8 chr3 18631043 18631290 -208893288 + MIR SINE MIR 8 262 0 2670 10 0 0 chr3 18631493 18631792 -208892786 + AluY SINE Alu 11 309 -2 2412 156 66 0 chr3 18631851 18632307 -208892271 - L1MB5 LINE L1 0 6174 5689 2216 112 0 0 chr3 18632485 18632789 -208891789 + AluSx SINE Alu 1 304 -8 2390 68 0 10 chr3 18632800 18633108 -208891470 + AluY SINE Alu 1 305 -6 238 265 0 44 chr3 18633266 18633334 -208891244 - MIR SINE MIR -149 113 49 1430 177 0 4 chr3 18633383 18633632 -208890946 + AluJo SINE Alu 11 258 -54 2193 87 7 0 chr3 18633651 18633949 -208890629 + AluSp SINE Alu 1 300 -13 1048 265 146 10 chr3 18633960 18634371 -208890207 - L2 LINE L2 -19 3294 2828 334 281 69 50 chr3 18634575 18634613 -208889965 - L2 LINE L2 -239 3033 2997 2941 150 87 48 chr3 18634613 18635050 -208889528 - LTR26E LTR ERV1 0 622 154 1684 159 10 17 chr3 18635050 18635351 -208889227 + AluJb SINE Alu 1 299 -13 2941 150 87 48 chr3 18635351 18635512 -208889066 - LTR26E LTR ERV1 -468 154 1 334 281 69 50 chr3 18635512 18635633 -208888945 - L2 LINE L2 -275 2997 2871 1722 129 3 28 chr3 18635901 18636187 -208888391 + AluSx SINE Alu 1 279 -33 345 315 0 22 chr3 18636452 18636541 -208888037 - L1MC4 LINE L1 -1342 6700 6614 1570 178 3 21 chr3 18636623 18636909 -208887669 - AluJo SINE Alu -31 281 1 861 295 38 26 chr3 18637001 18637347 -208887231 - L1ME LINE L1 -374 5747 5398 2036 95 50 0 chr3 18637350 18637633 -208886945 - AluSx SINE Alu -15 297 1 1093 91 0 62 chr3 18637825 18638001 -208886577 + AluSg SINE Alu 14 178 -132 4628 127 19 19 chr3 18638470 18639242 -208885336 - LTR5 LTR ERVK 0 969 198 486 151 0 0 chr3 18639402 18639475 -208885103 - AluS SINE Alu -235 77 5 1449 140 0 0 chr3 18639590 18639812 -208884766 + AluSg/x SINE Alu 83 304 -6 1069 165 90 5 chr3 18639812 18640024 -208884554 + AluSx SINE Alu 1 230 -82 1811 119 4 0 chr3 18640063 18640323 -208884255 - AluSx SINE Alu -11 301 41 295 233 0 14 chr3 18640327 18640400 -208884178 + MLT1C LTR MaLR 66 137 -330 1432 181 0 24 chr3 18640427 18640714 -208883864 - AluJb SINE Alu -32 280 1 807 252 94 0 chr3 18640736 18640990 -208883588 + MLT1C LTR MaLR 190 467 0 1137 415 0 29 chr3 18641155 18641466 -208883112 + AluJb SINE Alu 1 302 0 732 215 7 7 chr3 18641467 18641602 -208882976 - MER5A DNA MER1_type -52 137 3 2325 80 0 0 chr3 18641752 18642052 -208882526 - AluY SINE Alu -11 300 1 261 315 14 0 chr3 18642121 18642194 -208882384 - L1ME LINE L1 -476 5645 5572 1608 147 4 12 chr3 18642219 18642478 -208882100 - AluSq SINE Alu -56 257 1 243 143 0 24 chr3 18642478 18642520 -208882058 + MSTA LTR MaLR 388 428 0 317 138 17 0 chr3 18642520 18642578 -208882000 - HSMAR2 DNA Mariner -1242 60 2 1047 192 22 14 chr3 18642578 18642813 -208881765 - L1M4 LINE L1 -451 5713 5470 1254 221 61 0 chr3 18643211 18643505 -208881073 - AluJb SINE Alu 0 312 1 1334 224 14 0 chr3 18643608 18643889 -208880689 + AluJo SINE Alu 3 287 -25 1615 125 4 47 chr3 18643971 18644064 -208880514 + AluSx SINE Alu 34 129 -183 1749 126 63 0 chr3 18644064 18644333 -208880245 + AluSx SINE Alu 1 286 -26 1615 125 4 47 chr3 18644333 18644350 -208880228 + AluSx SINE Alu 129 145 -167 2265 52 42 0 chr3 18644350 18644637 -208879941 + AluY SINE Alu 1 299 -12 1615 125 4 47 chr3 18644637 18644804 -208879774 + AluSx SINE Alu 145 300 -12 200 383 0 0 chr3 18644915 18644975 -208879603 - L2 LINE L2 -22 3291 3232 547 233 100 104 chr3 18645134 18645413 -208879165 + MER45C DNA AcHobo 102 379 -574 1272 221 144 89 chr3 18645443 18645798 -208878780 + MER45C DNA AcHobo 448 782 -799 1985 127 6 19 chr3 18645798 18646114 -208878464 - AluSx SINE Alu 0 312 1 1272 221 144 89 chr3 18646114 18646136 -208878442 + MER45C DNA AcHobo 782 801 -780 2248 98 0 3 chr3 18646136 18646441 -208878137 - AluSx SINE Alu -8 304 1 1272 221 144 89 chr3 18646441 18646500 -208878078 + MER45C DNA AcHobo 801 909 -44 886 142 0 7 chr3 18646500 18646641 -208877937 - FLAM_C SINE Alu -3 140 1 2269 93 0 7 chr3 18646653 18646955 -208877623 - AluSg SINE Alu -10 300 1 392 132 0 0 chr3 18646956 18647009 -208877569 + MER45C DNA AcHobo 901 953 0 360 327 9 0 chr3 18647240 18647350 -208877228 - MLT1H1 LTR MaLR -250 305 195 683 100 18 9 chr3 18647514 18647624 -208876954 + AluSp/q SINE Alu 199 309 -4 990 229 134 42 chr3 18647624 18647809 -208876769 + HAL1 LINE L1 1481 1648 -859 2042 108 7 13 chr3 18647809 18648114 -208876464 - AluSx SINE Alu -9 303 1 990 229 134 42 chr3 18648114 18648264 -208876314 + HAL1 LINE L1 1648 1847 -660 240 233 27 27 chr3 18648347 18648420 -208876158 + GA-rich Low_complexity Low_complexity 4 76 0 347 280 25 3 chr3 18648554 18648704 -208875874 - MER113 DNA MER1_type? 0 521 316 1927 138 24 0 chr3 18648714 18649012 -208875566 + AluSx SINE Alu 8 312 0 1994 134 3 0 chr3 18649018 18649317 -208875261 + AluSx SINE Alu 1 300 -12 1745 139 0 55 chr3 18650175 18650485 -208874093 - AluJb SINE Alu -19 293 1 1287 93 6 6 chr3 18650490 18650672 -208873906 - AluSp SINE Alu -12 301 120 24 0 0 0 chr3 18650672 18650696 -208873882 + AT_rich Low_complexity Low_complexity 1 24 0 2007 79 4 0 chr3 18650976 18651241 -208873337 + AluSg SINE Alu 28 293 -17 371 267 96 7 chr3 18651325 18651460 -208873118 + MIR SINE MIR 116 262 0 2270 97 10 0 chr3 18651547 18651837 -208872741 + AluSp SINE Alu 1 293 -20 2567 50 0 10 chr3 18651902 18652200 -208872378 + AluY SINE Alu 4 298 -13 1994 143 3 3 chr3 18652558 18652852 -208871726 + AluSx SINE Alu 1 294 -18 2290 90 0 0 chr3 18652858 18653161 -208871417 + AluY SINE Alu 2 304 0 2171 87 3 51 chr3 18653166 18653478 -208871100 + AluSx SINE Alu 1 297 -15 29 28 0 0 chr3 18653572 18653608 -208870970 + AT_rich Low_complexity Low_complexity 1 36 0 263 239 35 35 chr3 18653976 18654089 -208870489 - MLT1K LTR MaLR -29 559 447 1090 113 0 0 chr3 18654146 18654305 -208870273 - AluY SINE Alu -10 301 143 309 195 146 168 chr3 18654777 18654874 -208869704 - MER5A DNA MER1_type -1 188 90 2123 137 0 0 chr3 18654874 18655167 -208869411 - AluSx SINE Alu -19 293 1 309 195 146 168 chr3 18655167 18655178 -208869400 - MER5A DNA MER1_type -99 90 80 186 43 0 0 chr3 18655178 18655201 -208869377 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 2271 68 0 0 chr3 18655205 18655484 -208869094 - AluY SINE Alu -32 279 1 309 195 146 168 chr3 18655484 18655554 -208869024 - MER5A DNA MER1_type -112 77 8 251 284 114 0 chr3 18655587 18655675 -208868903 + MIR SINE MIR 73 170 -92 961 128 0 0 chr3 18655717 18655850 -208868728 + AluJb SINE Alu 1 133 -179 2329 79 0 0 chr3 18655851 18656141 -208868437 + AluY SINE Alu 1 290 -21 2046 89 58 21 chr3 18656165 18656456 -208868122 + AluY SINE Alu 1 302 -9 2205 126 0 0 chr3 18656462 18656763 -208867815 + AluSx SINE Alu 1 301 -11 181 211 0 0 chr3 18656786 18656824 -208867754 + L2 LINE L2 3223 3260 -12 545 205 9 27 chr3 18657209 18657321 -208867257 + MIR SINE MIR 20 129 -133 * 640 292 99 10 chr3 18657312 18657514 -208867064 - MIR SINE MIR -41 221 2 934 142 34 0 chr3 18657597 18657745 -208866833 - FRAM SINE Alu -1 175 23 189 195 0 0 chr3 18657774 18657815 -208866763 + T-rich Low_complexity Low_complexity 1 41 0 561 65 0 0 chr3 18657839 18657918 -208866660 - L1PA8 LINE L1 -21 6140 6034 708 229 7 0 chr3 18657925 18658065 -208866513 - FLAM_C SINE Alu -1 142 2 448 133 0 0 chr3 18658065 18658146 -208866432 + AluJ/FRAM SINE Alu 223 303 0 668 329 24 12 chr3 18658149 18658398 -208866180 + MIR SINE MIR 1 252 -10 2312 119 0 3 chr3 18658597 18658908 -208865670 + AluSx SINE Alu 1 310 -2 210 320 82 65 chr3 18659357 18659651 -208864927 - L2 LINE L2 -54 3218 2920 1190 184 124 145 chr3 18659671 18660209 -208864369 + MLT1F LTR MaLR 16 542 0 402 269 167 30 chr3 18660393 18660627 -208863951 + MLT1K LTR MaLR 73 338 -250 2286 98 10 3 chr3 18660637 18660942 -208863636 - AluSx SINE Alu -5 307 1 1059 76 0 0 chr3 18660976 18661108 -208863470 + AluY SINE Alu 1 132 -179 1234 104 0 22 chr3 18661149 18661332 -208863246 + AluY SINE Alu 116 294 -17 886 186 68 77 chr3 18661447 18661479 -208863099 + AluJb SINE Alu 86 117 -195 441 0 0 0 chr3 18661479 18661528 -208863050 + (CA)n Simple_repeat Simple_repeat 2 50 0 886 186 68 77 chr3 18661528 18661715 -208862863 + AluJb SINE Alu 117 303 -9 1396 89 28 0 chr3 18662266 18662446 -208862132 + AluSq SINE Alu 1 185 -128 473 232 174 25 chr3 18662665 18662903 -208861675 + MLT1H1 LTR MaLR 275 522 -33 268 286 0 11 chr3 18662915 18663006 -208861572 + MLT1H1-int LTR MaLR 1 90 -1645 2037 154 12 0 chr3 18663051 18663384 -208861194 - LTR26B LTR ERV1 -1 530 191 2470 70 0 3 chr3 18663384 18663683 -208860895 - AluSx SINE Alu -14 298 1 1312 96 0 0 chr3 18663693 18663859 -208860719 - AluSp SINE Alu -8 305 140 700 63 0 4 chr3 18663864 18664009 -208860569 - LTR26B LTR ERV1 -327 204 4 262 301 89 56 chr3 18664010 18664174 -208860404 + MLT1H1-int LTR MaLR 309 487 -884 2433 86 3 0 chr3 18664174 18664477 -208860101 - AluSp SINE Alu -9 304 1 262 301 89 56 chr3 18664477 18664581 -208859997 + MLT1H1-int LTR MaLR 487 586 -785 807 214 0 36 chr3 18664682 18664850 -208859728 + FRAM SINE Alu 2 163 -13 2207 122 0 3 chr3 18665197 18665491 -208859087 - AluSg SINE Alu -15 295 3 285 254 75 40 chr3 18665854 18666027 -208858551 + MLT1H1-int LTR MaLR 1556 1734 -1 435 228 91 158 chr3 18666028 18666544 -208858034 + MLT1H1 LTR MaLR 1 550 -5 180 0 0 0 chr3 18666544 18666564 -208858014 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1897 156 11 0 chr3 18666571 18666716 -208857862 - AluSx SINE Alu -27 285 143 2410 92 0 0 chr3 18666716 18667022 -208857556 - AluY SINE Alu -5 306 1 1897 156 11 0 chr3 18667022 18667158 -208857420 - AluSx SINE Alu -169 143 1 435 228 91 158 chr3 18667158 18667223 -208857355 + MLT1H1 LTR MaLR 485 553 -2 508 266 14 0 chr3 18667225 18667364 -208857214 - LTR33 LTR ERVL -379 142 2 1019 137 5 58 chr3 18668164 18668183 -208856395 + AluSg/x SINE Alu 119 137 -173 2250 110 7 3 chr3 18668183 18668492 -208856086 + AluSx SINE Alu 1 310 -2 1019 137 5 58 chr3 18668492 18668662 -208855916 + AluSg/x SINE Alu 137 298 -12 918 130 0 8 chr3 18668756 18668887 -208855691 + FRAM SINE Alu 28 157 -19 702 115 34 115 chr3 18669159 18669307 -208855271 + AluJo SINE Alu 1 136 -176 2293 111 0 3 chr3 18669909 18670216 -208854362 - AluSc SINE Alu -3 306 1 2434 90 0 0 chr3 18671266 18671577 -208853001 - AluY SINE Alu 0 311 1 1044 119 0 0 chr3 18671579 18671713 -208852865 - AluSq/x SINE Alu -178 134 1 291 200 15 15 chr3 18671713 18671778 -208852800 + MLT1H1 LTR MaLR 489 553 -2 494 273 14 0 chr3 18671780 18671919 -208852659 - LTR33 LTR ERVL -379 142 2 774 313 197 8 chr3 18671924 18672406 -208852172 - L2 LINE L2 -808 2506 1934 822 103 86 0 chr3 18672406 18672523 -208852055 + AluJb SINE Alu 1 127 -185 213 39 0 0 chr3 18672526 18672552 -208852026 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 927 273 8 4 chr3 18672666 18672961 -208851617 + L1ME LINE L1 5319 5613 -557 789 276 73 11 chr3 18672974 18673249 -208851329 - LTR16A LTR ERVL -12 438 147 426 246 122 2 chr3 18673453 18673626 -208850952 + MIR SINE MIR 2 204 -58 1942 151 3 3 chr3 18673645 18673936 -208850642 - AluJb SINE Alu -21 291 1 610 194 24 77 chr3 18674065 18674116 -208850462 - MIR SINE MIR -10 252 200 2538 34 45 0 chr3 18674116 18674407 -208850171 - AluY SINE Alu -7 304 1 610 194 24 77 chr3 18674407 18674525 -208850053 - MIR SINE MIR -62 200 92 605 193 42 0 chr3 18674596 18674715 -208849863 - FLAM_A SINE Alu -9 124 1 363 279 50 75 chr3 18674718 18674961 -208849617 - L1MC/D LINE L1 -743 5403 5249 2015 122 27 0 chr3 18674961 18675256 -208849322 - AluSq SINE Alu -10 303 1 363 279 50 75 chr3 18675256 18675405 -208849173 - L1MC/D LINE L1 -897 5249 5098 2032 96 60 7 chr3 18675477 18675758 -208848820 - AluSg SINE Alu -14 296 1 2576 65 0 0 chr3 18675763 18676072 -208848506 - AluY SINE Alu -2 309 1 961 128 0 0 chr3 18676073 18676206 -208848372 - AluJb SINE Alu -179 133 1 251 284 114 0 chr3 18676248 18676336 -208848242 - MIR SINE MIR -92 170 73 333 199 149 149 chr3 18676369 18676439 -208848139 + MER5A DNA MER1_type 8 77 -112 2270 74 0 0 chr3 18676439 18676746 -208847832 + AluY SINE Alu 1 307 0 333 199 149 149 chr3 18676746 18676757 -208847821 + MER5A DNA MER1_type 77 87 -102 2123 137 0 0 chr3 18676757 18677050 -208847528 + AluSx SINE Alu 1 293 -19 333 199 149 149 chr3 18677050 18677147 -208847431 + MER5A DNA MER1_type 86 188 -1 621 207 9 0 chr3 18677513 18677624 -208846954 + MER81 DNA DNA 3 114 0 540 242 27 34 chr3 18677675 18677824 -208846754 + MER5B DNA MER1_type 1 148 -30 297 0 0 0 chr3 18677825 18677858 -208846720 + (TG)n Simple_repeat Simple_repeat 2 34 0 2207 100 0 0 chr3 18677859 18678138 -208846440 - AluSx SINE Alu -33 279 1 28 0 0 0 chr3 18678145 18678173 -208846405 + AT_rich Low_complexity Low_complexity 1 28 0 338 232 14 0 chr3 18678192 18678261 -208846317 + L2 LINE L2 3232 3301 -12 339 266 19 19 chr3 18678261 18678415 -208846163 + L1ME4a LINE L1 5968 6121 0 191 333 0 26 chr3 18679077 18679155 -208845423 + MIR3 SINE MIR 112 187 -21 522 330 176 9 chr3 18679520 18679975 -208844603 - L2 LINE L2 -850 2464 1934 822 103 86 0 chr3 18679975 18680092 -208844486 + AluJb SINE Alu 1 127 -185 213 39 0 0 chr3 18680095 18680121 -208844457 + (CAGA)n Simple_repeat Simple_repeat 2 27 0 941 263 22 22 chr3 18680235 18680509 -208844069 + L1ME LINE L1 5319 5585 -577 788 276 73 11 chr3 18680543 18680818 -208843760 - LTR16A LTR ERVL -12 438 147 1683 181 36 26 chr3 18680990 18681400 -208843178 - AluJo SINE Alu 0 413 1 761 320 71 43 chr3 18681505 18682067 -208842511 - ERVL LTR ERVL -439 5325 4748 194 0 39 0 chr3 18682263 18682289 -208842289 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 1746 154 28 21 chr3 18682291 18682577 -208842001 - AluSx SINE Alu -24 288 1 447 301 53 73 chr3 18683479 18683821 -208840757 - ERVL LTR ERVL -1140 4624 4290 24 0 0 0 chr3 18683821 18683845 -208840733 + AT_rich Low_complexity Low_complexity 1 24 0 1140 341 61 31 chr3 18683869 18685056 -208839522 - ERVL LTR ERVL -1339 4146 3007 1377 201 29 4 chr3 18685061 18685339 -208839239 + AluSq SINE Alu 1 285 -28 669 87 0 78 chr3 18685400 18685503 -208839075 - AluSg SINE Alu -214 96 2 2276 77 0 46 chr3 18685515 18685838 -208838740 - AluY SINE Alu -3 308 1 1299 102 0 0 chr3 18685848 18686014 -208838564 - AluSp SINE Alu -8 305 140 700 63 0 4 chr3 18686019 18686164 -208838414 - LTR26B LTR ERV1 -327 204 4 251 298 78 59 chr3 18686165 18686329 -208838249 + MLT1-int LTR MaLR 309 481 -890 2324 102 3 3 chr3 18686329 18686633 -208837945 - AluSp SINE Alu -9 304 1 251 298 78 59 chr3 18686633 18686723 -208837855 + MLT1-int LTR MaLR 481 568 -803 3116 62 14 39 chr3 18688049 18688488 -208836090 + SVA Other Other 5 432 -954 1272 78 0 0 chr3 18688488 18688641 -208835937 - AluSg SINE Alu -157 153 1 180 111 0 0 chr3 18689103 18689130 -208835448 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 752 172 39 0 chr3 18689160 18689288 -208835290 + FRAM SINE Alu 23 155 -21 632 292 99 10 chr3 18689392 18689594 -208834984 + MIR SINE MIR 2 221 -41 526 214 9 27 chr3 18689585 18689697 -208834881 - MIR SINE MIR -133 129 20 * 181 211 0 0 chr3 18690082 18690120 -208834458 - L2 LINE L2 -12 3260 3223 2205 126 0 3 chr3 18690143 18690445 -208834133 - AluSx SINE Alu -11 301 1 433 96 14 0 chr3 18690445 18690518 -208834060 + L1MB7 LINE L1 6111 6184 0 457 265 45 8 chr3 18691250 18691382 -208833196 - MIR3 SINE MIR -12 196 60 252 143 0 0 chr3 18691481 18691523 -208833055 - MIR SINE MIR -174 88 47 1021 155 14 0 chr3 18692329 18692477 -208832101 - FRAM SINE Alu -18 158 9 260 378 41 0 chr3 18692483 18692581 -208831997 + L2 LINE L2 3136 3237 -35 533 250 100 6 chr3 18692589 18692749 -208831829 - MIR SINE MIR -1 261 87 2211 104 0 19 chr3 18692749 18693065 -208831513 + AluSg SINE Alu 1 310 0 2119 136 6 22 chr3 18693408 18693756 -208830822 - AluJb SINE Alu 0 343 1 1101 76 0 0 chr3 18693781 18693912 -208830666 - AluSg SINE Alu -179 131 1 29 0 0 0 chr3 18693919 18693948 -208830630 + AT_rich Low_complexity Low_complexity 1 29 0 2145 120 0 14 chr3 18693954 18694246 -208830332 - AluSx SINE Alu -24 288 1 463 178 9 9 chr3 18694889 18694996 -208829582 + CT-rich Low_complexity Low_complexity 4 110 0 272 275 90 39 chr3 18695352 18695491 -208829087 - L1MC5 LINE L1 -105 7856 7699 2142 133 3 0 chr3 18695491 18695784 -208828794 - AluSx SINE Alu -18 294 1 272 275 90 39 chr3 18695784 18695877 -208828701 - L1MC5 LINE L1 -262 7699 7612 271 189 44 22 chr3 18696125 18696215 -208828363 + MER113 DNA MER1_type? 8 99 -422 2450 57 13 3 chr3 18696217 18696517 -208828061 - AluY SINE Alu -8 303 1 813 191 28 51 chr3 18696521 18696699 -208827879 - MER5A DNA MER1_type -9 180 7 393 284 89 35 chr3 18696732 18696901 -208827677 - L3 LINE CR1 -99 1478 1301 978 161 63 74 chr3 18697060 18697128 -208827450 - MER33 DNA MER1_type -2307 278 211 1715 168 13 30 chr3 18697128 18697431 -208827147 + AluJo SINE Alu 1 298 -14 978 161 63 74 chr3 18697431 18697658 -208826920 - MER33 DNA MER1_type -2374 211 1 1493 224 11 35 chr3 18697878 18698143 -208826435 - L1M4 LINE L1 -743 5403 5133 2293 97 0 0 chr3 18698143 18698461 -208826117 + AluSc SINE Alu 1 309 0 1493 224 11 35 chr3 18698461 18698604 -208825974 - L1M4 LINE L1 -1013 5133 5004 1803 162 53 3 chr3 18698604 18698888 -208825690 - AluSx SINE Alu -14 298 1 1493 224 11 35 chr3 18698888 18698929 -208825649 - L1M4 LINE L1 -1142 5004 4964 2263 93 3 40 chr3 18698977 18699301 -208825277 - AluSx SINE Alu 0 312 1 2289 90 0 0 chr3 18699306 18699609 -208824969 - AluY SINE Alu 0 304 2 2020 139 3 3 chr3 18699615 18699909 -208824669 - AluSx SINE Alu -18 294 1 2490 60 0 10 chr3 18700267 18700565 -208824013 - AluY SINE Alu -13 298 4 2270 97 10 0 chr3 18700630 18700920 -208823658 - AluSp SINE Alu -20 293 1 1426 40 12 0 chr3 18701161 18701334 -208823244 + AluY SINE Alu 128 302 -9 263 239 35 35 chr3 18701391 18701504 -208823074 + MLT1K LTR MaLR 447 559 -29 29 28 0 0 chr3 18701872 18701908 -208822670 + AT_rich Low_complexity Low_complexity 1 36 0 2430 64 3 3 chr3 18702002 18702297 -208822281 - AluY SINE Alu -16 295 1 516 293 108 14 chr3 18702297 18702589 -208821989 + L2 LINE L2 2923 3243 -70 996 168 15 30 chr3 18702612 18702815 -208821763 - MER3 DNA MER1_type 0 209 10 2362 68 20 7 chr3 18702881 18703174 -208821404 - AluY SINE Alu -14 297 1 1827 163 0 14 chr3 18703176 18703471 -208821107 - AluJb SINE Alu -21 291 1 931 207 5 11 chr3 18703551 18703739 -208820839 - MER20 DNA MER1_type 0 219 33 934 239 31 28 chr3 18703925 18704214 -208820364 + AluSx SINE Alu 2 291 -11 261 197 0 0 chr3 18704219 18704295 -208820283 + (TGAA)n Simple_repeat Simple_repeat 4 79 0 2289 106 0 0 chr3 18704430 18704722 -208819856 + AluSx SINE Alu 21 312 0 22 0 0 0 chr3 18705041 18705063 -208819515 + GC_rich Low_complexity Low_complexity 1 22 0 234 326 21 11 chr3 18705389 18705484 -208819094 - Charlie8 DNA MER1_type -2301 116 21 265 234 0 0 chr3 18706475 18706539 -208818039 + L1ME4a LINE L1 5683 5746 -2062 244 281 74 25 chr3 18706811 18706932 -208817646 + L1ME4a LINE L1 5979 6105 -16 2199 112 3 16 chr3 18707008 18707320 -208817258 + AluSx SINE Alu 1 308 -4 1671 153 66 20 chr3 18707325 18707813 -208816765 + L1MB3 LINE L1 5577 6143 -40 2216 120 0 13 chr3 18707813 18708122 -208816456 + AluSx SINE Alu 1 305 -7 502 204 0 0 chr3 18708136 18708229 -208816349 + FLAM_A SINE Alu 16 108 -34 2136 112 16 7 chr3 18708229 18708532 -208816046 - AluSq SINE Alu -7 306 1 671 82 48 0 chr3 18708597 18708744 -208815834 + GA-rich Low_complexity Low_complexity 1 154 0 2497 70 0 0 chr3 18711543 18711842 -208812736 + AluY SINE Alu 1 299 -12 184 154 39 0 chr3 18712152 18712204 -208812374 + CT-rich Low_complexity Low_complexity 2 55 0 791 216 39 39 chr3 18712572 18712780 -208811798 + MIR SINE MIR 51 258 -4 2332 96 0 7 chr3 18712924 18713226 -208811352 - AluSx SINE Alu -4 308 9 182 297 55 41 chr3 18713318 18713463 -208811115 + L2 LINE L2 2824 2970 -302 852 224 175 32 chr3 18713493 18713520 -208811058 - L2 LINE L2 0 3313 3291 1963 147 17 0 chr3 18713520 18713812 -208810766 + AluJo SINE Alu 1 297 -15 852 224 175 32 chr3 18713812 18714222 -208810356 - L2 LINE L2 -22 3291 2795 911 149 34 0 chr3 18714344 18714492 -208810086 - FRAM SINE Alu -1 175 23 198 191 0 0 chr3 18714521 18714563 -208810015 + T-rich Low_complexity Low_complexity 1 42 0 546 80 0 0 chr3 18714583 18714662 -208809916 - L1PA8 LINE L1 -21 6140 6034 715 227 7 0 chr3 18714669 18714810 -208809768 - FLAM_C SINE Alu 0 143 2 448 133 0 0 chr3 18714810 18714891 -208809687 + AluJ/FRAM SINE Alu 223 303 0 684 325 24 12 chr3 18714894 18715143 -208809435 + MIR SINE MIR 1 252 -10 2044 121 10 13 chr3 18715342 18715640 -208808938 + AluSx SINE Alu 1 297 -15 579 234 62 45 chr3 18716435 18716621 -208807957 + MIR SINE MIR 4 195 -62 270 0 0 0 chr3 18716621 18716651 -208807927 + (TATG)n Simple_repeat Simple_repeat 2 31 0 2138 112 3 7 chr3 18716657 18716952 -208807626 - AluY SINE Alu -17 294 1 2057 147 55 24 chr3 18716952 18717373 -208807205 + L1MC3 LINE L1 5397 5830 -1955 2742 133 171 20 chr3 18717417 18717966 -208806612 - MER67B LTR ERV1 -22 639 8 231 36 0 0 chr3 18717967 18717995 -208806583 + (TCCCC)n Simple_repeat Simple_repeat 3 30 0 2148 114 10 0 chr3 18718014 18718303 -208806275 - AluSq SINE Alu -21 292 1 2275 82 0 3 chr3 18718340 18718632 -208805946 - AluY SINE Alu -20 291 1 2122 190 11 25 chr3 18718633 18719076 -208805502 + L1MC3 LINE L1 5845 6281 -1504 834 224 140 89 chr3 18719078 18719573 -208805005 - MER66A LTR ERV1 -10 601 104 2929 180 47 0 chr3 18719573 18720129 -208804449 + L1MC3 LINE L1 6276 6857 -928 270 0 0 0 chr3 18720129 18720159 -208804419 + (CA)n Simple_repeat Simple_repeat 2 31 0 445 265 121 28 chr3 18720320 18720535 -208804043 + MLT1K LTR MaLR 340 574 -14 649 254 117 76 chr3 18720601 18720995 -208803583 - MLT1J LTR MaLR -3 508 99 299 306 48 127 chr3 18721033 18721467 -208803111 - L2 LINE L2 -925 2389 1990 2209 99 0 62 chr3 18721473 18721795 -208802783 + AluSx SINE Alu 2 303 -9 241 224 30 60 chr3 18721961 18722028 -208802550 - MIR SINE MIR -98 164 100 463 291 0 4 chr3 18722220 18722356 -208802222 + MIR SINE MIR 19 151 -65 2300 107 10 3 chr3 18722450 18722758 -208801820 + AluSx SINE Alu 1 310 -2 244 270 203 27 chr3 18722904 18723052 -208801526 - MIR SINE MIR -7 255 82 231 209 0 0 chr3 18723432 18723475 -208801103 - MIR SINE MIR -2 260 218 2315 80 10 3 chr3 18723481 18723783 -208800795 - AluY SINE Alu -7 304 1 2049 143 0 10 chr3 18723910 18724218 -208800360 - AluJb SINE Alu -7 305 1 1974 145 3 3 chr3 18724378 18724668 -208799910 + AluJb SINE Alu 1 290 -22 390 286 75 41 chr3 18724676 18724760 -208799818 + HAL1b LINE L1 1191 1284 -64 1979 147 0 27 chr3 18724760 18725059 -208799519 + AluSq SINE Alu 2 292 -21 390 286 75 41 chr3 18725059 18725121 -208799457 + HAL1b LINE L1 1284 1342 -6 208 331 57 40 chr3 18725864 18725988 -208798590 - MIR SINE MIR -70 192 67 559 241 61 50 chr3 18726401 18726630 -208797948 + L1ME4a LINE L1 5856 6090 -31 2167 141 3 0 chr3 18726630 18726942 -208797636 - AluSq SINE Alu 0 313 1 559 241 61 50 chr3 18726942 18726974 -208797604 + L1ME4a LINE L1 6090 6120 -1 191 262 0 0 chr3 18727046 18727088 -208797490 + MIR SINE MIR 212 253 -9 626 283 16 21 chr3 18727176 18727367 -208797211 + MIR SINE MIR 71 260 -2 2330 87 3 0 chr3 18727877 18728175 -208796403 - AluY SINE Alu -12 299 1 1009 112 0 8 chr3 18728178 18728312 -208796266 - AluJb SINE Alu -179 133 1 294 95 0 0 chr3 18728313 18728355 -208796223 + (TTTC)n Simple_repeat Simple_repeat 2 43 0 231 292 0 0 chr3 18729357 18729422 -208795156 - MER58 DNA MER1_type 0 2420 2356 192 40 0 0 chr3 18729438 18729463 -208795115 + (TGG)n Simple_repeat Simple_repeat 3 27 0 1841 184 18 21 chr3 18729465 18729850 -208794728 + MER65C LTR ERV1 78 461 0 261 261 0 46 chr3 18729882 18729947 -208794631 - MER58 DNA MER1_type -166 58 1 242 229 0 0 chr3 18730350 18730398 -208794180 + L1M4 LINE L1 4284 4331 -1815 2385 77 0 7 chr3 18730404 18730702 -208793876 - AluY SINE Alu -15 296 1 250 315 14 0 chr3 18730771 18730844 -208793734 - L1ME LINE L1 -476 5645 5572 1826 129 96 7 chr3 18730856 18731127 -208793451 - AluSq SINE Alu -18 295 1 238 289 145 0 chr3 18731194 18731270 -208793308 - L2 LINE L2 0 3272 3186 221 167 0 0 chr3 18731268 18731304 -208793274 - MIR SINE MIR -83 179 144 * 61 37 0 0 chr3 18731306 18731388 -208793190 + AT_rich Low_complexity Low_complexity 1 82 0 292 195 12 69 chr3 18731389 18731427 -208793151 - MIR SINE MIR -64 144 120 2053 143 0 7 chr3 18731427 18731727 -208792851 + AluSx SINE Alu 1 298 -14 292 195 12 69 chr3 18731727 18731768 -208792810 - MIR SINE MIR -88 120 78 2279 116 7 7 chr3 18732018 18732328 -208792250 - AluJo SINE Alu -1 311 2 200 268 29 0 chr3 18732575 18732650 -208791928 + MIR SINE MIR 106 143 -65 1349 279 45 20 chr3 18732650 18732777 -208791801 + HERV16 LTR ERVL 2323 2445 -2551 2186 128 48 31 chr3 18732777 18733135 -208791443 + THE1B LTR MaLR 1 364 0 1349 279 45 20 chr3 18733135 18733447 -208791131 + HERV16 LTR ERVL 2445 2773 -2223 2497 81 0 7 chr3 18733486 18733796 -208790782 + AluY SINE Alu 1 308 -3 1681 135 45 28 chr3 18733800 18734088 -208790490 + L1PA16 LINE L1 5869 6161 -5 2189 78 12 72 chr3 18734263 18734582 -208789996 + AluSq SINE Alu 2 301 -12 1061 270 146 10 chr3 18734593 18735004 -208789574 - L2 LINE L2 -19 3294 2828 1439 159 40 0 chr3 18735246 18735497 -208789081 - LTR26B LTR ERV1 0 531 271 2728 102 151 118 chr3 18735734 18736632 -208787946 + pTR5 LTR ERV1 1206 2438 0 199 262 49 16 chr3 18737429 18737490 -208787088 + MIR SINE MIR 61 123 -85 389 266 8 40 chr3 18737733 18737857 -208786721 + MIR SINE MIR 24 143 -65 283 299 11 0 chr3 18737921 18738008 -208786570 + L1MC/D LINE L1 5186 5273 -873 2565 57 0 0 chr3 18738015 18738311 -208786267 - AluY SINE Alu -15 296 1 405 263 18 0 chr3 18738311 18738425 -208786153 + L1MC/D LINE L1 5685 5800 -559 679 147 0 0 chr3 18738753 18738848 -208785730 - AluJ/FLAM SINE Alu -216 96 2 23 33 0 0 chr3 18738851 18738881 -208785697 + AT_rich Low_complexity Low_complexity 1 30 0 249 325 157 0 chr3 18739088 18739240 -208785338 + MIR3 SINE MIR 8 181 -63 359 283 92 17 chr3 18740362 18740535 -208784043 - Charlie8 DNA MER1_type -2140 277 92 1098 83 0 0 chr3 18740542 18740675 -208783903 + AluSc SINE Alu 1 133 -176 2040 138 3 7 chr3 18740675 18740971 -208783607 + AluSq SINE Alu 1 295 -18 944 290 118 7 chr3 18741146 18741560 -208783018 - LTR16B LTR ERVL -4 460 1 233 266 16 126 chr3 18741587 18741835 -208782743 + L2 LINE L2 2690 2899 -373 2425 60 10 10 chr3 18741835 18742137 -208782441 - AluSq SINE Alu -11 302 1 233 266 16 126 chr3 18742137 18742213 -208782365 + L2 LINE L2 2899 2982 -290 1154 163 72 0 chr3 18742461 18742670 -208781908 - L1M3 LINE L1 -397 5786 5563 22 35 0 0 chr3 18743066 18743095 -208781483 + AT_rich Low_complexity Low_complexity 1 29 0 1879 128 40 47 chr3 18743100 18743396 -208781182 + AluSx SINE Alu 3 296 -16 2193 105 0 3 chr3 18743398 18743694 -208780884 + AluY SINE Alu 1 295 -16 2506 145 71 67 chr3 18743694 18744015 -208780563 - L1MB3 LINE L1 -11 6172 5847 1978 176 0 0 chr3 18744015 18744327 -208780251 - AluJb SINE Alu 0 312 1 2506 145 71 67 chr3 18744327 18744613 -208779965 - L1MB3 LINE L1 -336 5847 5563 23 0 0 0 chr3 18744619 18744642 -208779936 + AT_rich Low_complexity Low_complexity 1 23 0 586 208 156 87 chr3 18744733 18744821 -208779757 + LTR50 LTR ERVL 471 551 -244 2370 57 0 11 chr3 18744821 18745150 -208779428 - AluY SINE Alu 0 327 2 198 0 0 0 chr3 18745150 18745172 -208779406 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2265 96 3 0 chr3 18745173 18745455 -208779123 - AluSx SINE Alu -29 283 1 2413 91 0 0 chr3 18745461 18745757 -208778821 - AluY SINE Alu -15 296 1 586 208 156 87 chr3 18745757 18745946 -208778632 + LTR50 LTR ERVL 555 779 -16 1033 188 0 0 chr3 18746048 18746218 -208778360 - AluJb SINE Alu -3 309 140 496 192 0 0 chr3 18746218 18746291 -208778287 - AluS SINE Alu -239 74 2 647 220 43 105 chr3 18746364 18746553 -208778025 - MIR SINE MIR -2 260 83 2138 116 3 0 chr3 18746553 18746863 -208777715 + AluSq SINE Alu 11 313 0 647 220 43 105 chr3 18746863 18746902 -208777676 - MIR SINE MIR -179 83 43 1050 119 94 5 chr3 18747124 18747325 -208777253 + L1MA8 LINE L1 6053 6271 -20 1549 201 3 28 chr3 18747325 18747644 -208776934 - AluJo SINE Alu -1 311 1 465 207 47 35 chr3 18748465 18748632 -208775946 + MIR SINE MIR 9 143 -65 611 274 86 5 chr3 18748732 18748918 -208775660 - MIR SINE MIR -55 207 7 761 185 23 0 chr3 18749326 18749456 -208775122 - FLAM_A SINE Alu 0 133 1 2424 93 0 3 chr3 18749581 18749881 -208774697 - AluSx SINE Alu -13 299 1 1848 169 0 29 chr3 18750303 18750611 -208773967 - AluJo SINE Alu -13 299 1 23 33 0 0 chr3 18750613 18750643 -208773935 + AT_rich Low_complexity Low_complexity 1 30 0 191 261 11 45 chr3 18750819 18750907 -208773671 - L2 LINE L2 -1110 2204 2120 * 253 323 157 0 chr3 18750850 18751002 -208773576 + MIR SINE MIR 8 181 -63 359 283 92 17 chr3 18752124 18752297 -208772281 - Charlie8 DNA MER1_type -2140 277 92 2261 109 0 0 chr3 18752304 18752597 -208771981 + AluSc SINE Alu 1 293 -16 269 250 24 0 chr3 18752611 18752695 -208771883 - HsTC2 DNA Tc2 -5 1893 1808 585 227 147 90 chr3 18753269 18753438 -208771140 - MER102a DNA MER1_type -1100 317 159 2145 128 20 0 chr3 18753438 18753744 -208770834 - AluSx SINE Alu 0 312 1 585 227 147 90 chr3 18753744 18753756 -208770822 - MER102a DNA MER1_type -1258 159 149 2321 116 0 0 chr3 18753756 18754059 -208770519 - AluSx SINE Alu -9 303 1 585 227 147 90 chr3 18754059 18754176 -208770402 - MER102a DNA MER1_type -1268 149 1 876 203 68 0 chr3 18754457 18754634 -208769944 + MER5A DNA MER1_type 1 189 0 2440 67 0 0 chr3 18754767 18755072 -208769506 + AluY SINE Alu 1 305 0 506 227 36 0 chr3 18755175 18755285 -208769293 - MIR SINE MIR -89 173 60 1593 117 113 0 chr3 18755422 18755696 -208768882 - Tigger3(Golem) DNA MER2_type -3 3026 2722 2545 67 0 0 chr3 18755710 18756010 -208768568 - AluY SINE Alu -11 300 1 902 145 0 0 chr3 18756018 18756142 -208768436 - FLAM_C SINE Alu -14 129 6 357 113 38 38 chr3 18756148 18756228 -208768350 - HsTC2 DNA Tc2 -1816 82 3 1005 153 0 25 chr3 18756242 18756405 -208768173 - AluJo/FRAM SINE Alu -8 304 146 242 178 0 0 chr3 18756405 18756450 -208768128 + Alu SINE Alu 250 294 -8 881 222 248 4 chr3 18756453 18756719 -208767859 + L1ME LINE L1 5294 5624 -542 2178 121 0 3 chr3 18756719 18757016 -208767562 + AluSq SINE Alu 1 296 -17 1245 218 8 11 chr3 18757406 18757667 -208766911 + AluJo SINE Alu 1 260 -52 2203 144 28 3 chr3 18758183 18758538 -208766040 + THE1B LTR MaLR 1 364 0 544 96 24 0 chr3 18758538 18758621 -208765957 + THE1B-int LTR MaLR 1 85 -1495 1711 161 99 28 chr3 18758621 18759191 -208765387 - MER51B LTR ERV1 -1 376 1 459 61 15 0 chr3 18759191 18759257 -208765321 + THE1B-int LTR MaLR 87 153 -1427 9087 98 42 44 chr3 18759257 18760745 -208763833 + THE1B-int LTR MaLR 97 1580 0 2320 140 22 0 chr3 18760745 18761101 -208763477 + THE1B LTR MaLR 1 364 0 596 280 93 6 chr3 18761164 18761401 -208763177 + MIR SINE MIR 4 262 0 246 267 0 0 chr3 18761651 18761726 -208762852 - L1ME4a LINE L1 -1 6120 6046 2327 107 3 0 chr3 18761905 18762205 -208762373 + AluSp SINE Alu 1 301 -12 279 0 0 0 chr3 18762589 18762620 -208761958 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6694 127 31 72 chr3 18762629 18763755 -208760823 - SVA Other Other 0 1386 307 22 35 0 0 chr3 18763756 18763785 -208760793 + AT_rich Low_complexity Low_complexity 1 29 0 996 168 15 30 chr3 18763838 18764041 -208760537 + MER3 DNA MER1_type 10 209 0 534 281 97 51 chr3 18764064 18764356 -208760222 - L2 LINE L2 -70 3243 2933 2547 53 3 3 chr3 18764356 18764658 -208759920 + AluY SINE Alu 1 302 -9 534 281 97 51 chr3 18764658 18764696 -208759882 - L2 LINE L2 -380 2933 2898 2623 43 3 0 chr3 18764708 18765008 -208759570 + AluY SINE Alu 1 301 -10 290 181 69 55 chr3 18765056 18765147 -208759431 + MIR3 SINE MIR 95 196 -35 2163 120 10 7 chr3 18765262 18765561 -208759017 - AluSx SINE Alu -12 300 1 671 82 48 0 chr3 18765626 18765773 -208758805 + GA-rich Low_complexity Low_complexity 1 154 0 328 275 101 40 chr3 18766308 18766457 -208758121 - L1ME3A LINE L1 -8 6162 6005 562 231 266 8 chr3 18766544 18766720 -208757858 + L2 LINE L2 2886 3015 -298 2150 103 59 0 chr3 18766720 18767010 -208757568 - AluSq SINE Alu -6 307 1 562 231 266 8 chr3 18767010 18767089 -208757489 + L2 LINE L2 3015 3207 -106 931 207 5 11 chr3 18767090 18767278 -208757300 - MER20 DNA MER1_type 0 219 33 2158 113 3 3 chr3 18767462 18767753 -208756825 + AluSx SINE Alu 1 291 -21 261 197 0 0 chr3 18767758 18767834 -208756744 + (TGAA)n Simple_repeat Simple_repeat 4 79 0 2289 106 0 0 chr3 18767969 18768261 -208756317 + AluSx SINE Alu 21 312 0 330 282 18 59 chr3 18768293 18768463 -208756115 + L2 LINE L2 1761 1923 -1391 683 254 18 0 chr3 18768471 18768640 -208755938 + L1MEc LINE L1 50 221 -6175 549 189 92 67 chr3 18768660 18768784 -208755794 + MLT1A2 LTR MaLR 1 131 -259 2518 72 0 3 chr3 18768784 18769088 -208755490 + AluY SINE Alu 1 303 -8 549 189 92 67 chr3 18769088 18769127 -208755451 + MLT1A2 LTR MaLR 131 168 -222 776 252 14 32 chr3 18769127 18769345 -208755233 + AluJo SINE Alu 81 294 -18 835 171 0 25 chr3 18769392 18769550 -208755028 + MLT1A2 LTR MaLR 189 342 -32 1169 155 0 27 chr3 18769550 18769737 -208754841 - AluJo SINE Alu -9 303 122 603 289 35 20 chr3 18769760 18769961 -208754617 + L1MEc LINE L1 254 457 -5939 1204 137 0 6 chr3 18770027 18770202 -208754376 - AluSg/x SINE Alu -5 305 132 2281 104 14 0 chr3 18770202 18770372 -208754206 - AluSq SINE Alu -12 301 124 183 80 0 0 chr3 18770372 18770397 -208754181 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 2281 104 14 0 chr3 18770397 18770523 -208754055 - AluSq SINE Alu -189 124 1 326 304 48 126 chr3 18770525 18770962 -208753616 + L2 LINE L2 1987 2389 -925 657 249 119 79 chr3 18771000 18771394 -208753184 + MLT1J LTR MaLR 99 508 -3 491 321 88 10 chr3 18771460 18771756 -208752822 - MLT1K LTR MaLR -14 574 256 373 246 79 0 chr3 18771757 18771871 -208752707 - MLT1H LTR MaLR -1 548 426 316 342 11 31 chr3 18771871 18772141 -208752437 + GA-rich Low_complexity Low_complexity 1 264 0 396 247 47 13 chr3 18772142 18772292 -208752286 - MLT1H LTR MaLR -316 233 79 2569 170 40 4 chr3 18772615 18773120 -208751458 - L1MB4 LINE L1 -6 6174 5652 523 42 28 0 chr3 18773122 18773194 -208751384 - AluY SINE Alu -6 303 230 358 20 0 40 chr3 18773197 18773247 -208751331 + AluSg/x SINE Alu 86 133 -167 2205 115 3 7 chr3 18773247 18773543 -208751035 + AluSq SINE Alu 1 295 -18 926 292 118 7 chr3 18773718 18774132 -208750446 - LTR16B LTR ERVL -4 460 1 195 309 29 15 chr3 18774159 18774227 -208750351 + L2 LINE L2 2690 2758 -556 539 195 23 0 chr3 18774405 18774492 -208750086 - AluSp/q SINE Alu -9 304 216 1111 172 72 0 chr3 18774696 18774905 -208749673 - L1M3 LINE L1 -397 5786 5563 22 35 0 0 chr3 18775301 18775330 -208749248 + AT_rich Low_complexity Low_complexity 1 29 0 1879 128 40 47 chr3 18775335 18775631 -208748947 + AluSx SINE Alu 3 296 -16 2153 92 50 0 chr3 18775633 18775914 -208748664 + AluSg SINE Alu 1 295 -15 849 292 48 15 chr3 18775917 18776249 -208748329 + L1ME LINE L1 5398 5740 -381 1743 182 3 20 chr3 18776351 18776648 -208747930 + AluJo SINE Alu 1 292 -20 394 296 0 0 chr3 18776648 18776736 -208747842 - L1MC4 LINE L1 -1340 6702 6615 * 396 324 9 0 chr3 18776721 18776832 -208747746 + L1MC4 LINE L1 6614 6725 -1317 1402 221 61 0 chr3 18777123 18777417 -208747161 - AluJb SINE Alu 0 312 1 1458 228 14 0 chr3 18777520 18777801 -208746777 + AluJo SINE Alu 3 287 -25 640 130 11 0 chr3 18777883 18777975 -208746603 + AluJb SINE Alu 34 126 -186 1968 172 0 3 chr3 18777976 18778284 -208746294 + AluSg SINE Alu 1 307 -3 706 214 8 8 chr3 18778286 18778417 -208746161 - MER5A DNA MER1_type -56 133 3 2469 80 0 0 chr3 18778567 18778867 -208745711 - AluY SINE Alu -11 300 1 250 315 14 0 chr3 18778936 18779009 -208745569 - L1ME LINE L1 -476 5645 5572 1826 129 96 7 chr3 18779021 18779292 -208745286 - AluSq SINE Alu -18 295 1 238 289 145 0 chr3 18779359 18779435 -208745143 - L2 LINE L2 0 3272 3186 221 167 0 0 chr3 18779433 18779469 -208745109 - MIR SINE MIR -83 179 144 * 61 37 0 0 chr3 18779471 18779553 -208745025 + AT_rich Low_complexity Low_complexity 1 82 0 292 195 12 69 chr3 18779554 18779592 -208744986 - MIR SINE MIR -64 144 120 2053 143 0 7 chr3 18779592 18779892 -208744686 + AluSx SINE Alu 1 298 -14 292 195 12 69 chr3 18779892 18779933 -208744645 - MIR SINE MIR -88 120 78 2279 116 7 7 chr3 18780183 18780493 -208744085 - AluJo SINE Alu -1 311 2 200 268 29 0 chr3 18780740 18780815 -208743763 + MIR SINE MIR 106 143 -65 1349 279 45 20 chr3 18780815 18780942 -208743636 + HERV16 LTR ERVL 2323 2445 -2551 2186 128 48 31 chr3 18780942 18781300 -208743278 + THE1B LTR MaLR 1 364 0 1349 279 45 20 chr3 18781300 18781612 -208742966 + HERV16 LTR ERVL 2445 2773 -2223 2519 74 0 7 chr3 18781651 18781961 -208742617 + AluY SINE Alu 1 308 -3 1681 135 45 28 chr3 18781965 18782253 -208742325 + L1PA16 LINE L1 5869 6161 -5 2237 83 9 74 chr3 18782428 18782754 -208741824 + AluSq SINE Alu 2 306 -7 23 33 0 0 chr3 18782783 18782813 -208741765 + AT_rich Low_complexity Low_complexity 1 30 0 1943 163 0 0 chr3 18782944 18783244 -208741334 + AluJb SINE Alu 9 308 -4 294 95 0 0 chr3 18784130 18784172 -208740406 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 1009 112 0 8 chr3 18784173 18784307 -208740271 + AluJb SINE Alu 1 133 -179 2330 87 3 0 chr3 18784310 18784608 -208739970 + AluY SINE Alu 1 299 -12 752 269 68 17 chr3 18785118 18785352 -208739226 - MIR SINE MIR -2 260 15 191 262 0 0 chr3 18785400 18785442 -208739136 - MIR SINE MIR -9 253 212 559 241 61 50 chr3 18785514 18785546 -208739032 - L1ME4a LINE L1 -1 6120 6090 2167 141 3 0 chr3 18785546 18785858 -208738720 + AluSq SINE Alu 1 313 0 559 241 61 50 chr3 18785858 18786087 -208738491 - L1ME4a LINE L1 -31 6090 5856 427 290 152 37 chr3 18787366 18787428 -208737150 - HAL1b LINE L1 -6 1342 1289 1979 147 0 27 chr3 18787428 18787727 -208736851 - AluSq SINE Alu -21 292 2 427 290 152 37 chr3 18787727 18787819 -208736759 - HAL1b LINE L1 -59 1289 1209 1976 152 3 3 chr3 18787819 18788109 -208736469 - AluJb SINE Alu -22 290 1 427 290 152 37 chr3 18788109 18788170 -208736408 - HAL1b LINE L1 -139 1209 1101 264 86 0 138 chr3 18788208 18788247 -208736331 + MSTB2 LTR MaLR 361 391 -66 2411 106 0 0 chr3 18788247 18788558 -208736020 - AluSx SINE Alu -1 311 1 264 86 0 138 chr3 18788558 18788576 -208736002 + MSTB2 LTR MaLR 391 410 -47 338 232 14 0 chr3 18788612 18788681 -208735897 + L2 LINE L2 3232 3301 -12 358 260 19 19 chr3 18788681 18788835 -208735743 + L1ME4a LINE L1 5968 6121 0 191 333 0 26 chr3 18789497 18789575 -208735003 + MIR3 SINE MIR 112 187 -21 862 188 75 11 chr3 18789685 18789871 -208734707 + MIR SINE MIR 56 253 -9 2418 100 0 3 chr3 18789988 18790297 -208734281 + AluSx SINE Alu 1 308 -4 791 216 39 39 chr3 18790441 18790649 -208733929 - MIR SINE MIR -4 258 51 354 129 0 0 chr3 18791017 18791079 -208733499 + (GGA)n Simple_repeat Simple_repeat 2 63 0 2507 63 0 0 chr3 18791385 18791684 -208732894 - AluY SINE Alu -12 299 1 912 137 8 0 chr3 18792503 18792634 -208731944 - FLAM_C SINE Alu -1 132 1 771 194 0 8 chr3 18792973 18793107 -208731471 - FLAM_A SINE Alu 0 133 1 591 177 223 29 chr3 18793127 18793302 -208731276 - MER20 DNA MER1_type -4 215 7 718 203 34 14 chr3 18793356 18793504 -208731074 + MIR SINE MIR 34 184 -78 2404 74 7 3 chr3 18793640 18793938 -208730640 - AluSg SINE Alu -11 299 1 1021 155 14 0 chr3 18794457 18794605 -208729973 - FRAM SINE Alu -18 158 9 260 378 41 0 chr3 18794611 18794709 -208729869 + L2 LINE L2 3136 3237 -35 533 250 100 6 chr3 18794717 18794877 -208729701 - MIR SINE MIR -1 261 87 2211 104 0 19 chr3 18794877 18795193 -208729385 + AluSg SINE Alu 1 310 0 2149 127 6 22 chr3 18795536 18795883 -208728695 - AluJb SINE Alu 0 342 1 290 253 27 27 chr3 18795894 18795969 -208728609 - MIR SINE MIR -63 145 70 328 254 45 45 chr3 18796306 18796440 -208728138 - MIR SINE MIR -68 194 61 1912 49 0 9 chr3 18796447 18796701 -208727877 + AluY SINE Alu 60 311 0 255 208 62 0 chr3 18796823 18796871 -208727707 + L2 LINE L2 3213 3263 -9 338 338 114 43 chr3 18796875 18797295 -208727283 + L3 LINE CR1 935 1384 -193 566 154 22 22 chr3 18797303 18797439 -208727139 + CT-rich Low_complexity Low_complexity 1 136 0 834 189 0 13 chr3 18797462 18797774 -208726804 - FRAM SINE Alu 0 176 26 821 315 82 16 chr3 18797962 18798413 -208726165 + Charlie7 DNA MER1_type 60 540 -2072 211 219 0 0 chr3 18798666 18798707 -208725871 + (TATATG)n Simple_repeat Simple_repeat 1 41 0 320 188 0 12 chr3 18799086 18799171 -208725407 + CT-rich Low_complexity Low_complexity 1 84 0 236 143 18 0 chr3 18799196 18799252 -208725326 + (CA)n Simple_repeat Simple_repeat 2 58 0 307 293 0 49 chr3 18799303 18799426 -208725152 + MIR SINE MIR 31 141 -67 2290 157 15 34 chr3 18799427 18799549 -208725029 + L1M4 LINE L1 5280 5403 -781 2347 90 3 3 chr3 18799549 18799848 -208724730 + AluSp SINE Alu 3 301 -12 2290 157 15 34 chr3 18799848 18800191 -208724387 + L1M4 LINE L1 5403 5736 -448 1329 105 0 6 chr3 18800191 18800363 -208724215 - AluSx SINE Alu -141 171 1 433 96 14 0 chr3 18800363 18800436 -208724142 + L1MB7 LINE L1 6111 6184 0 458 259 43 14 chr3 18801211 18801350 -208723228 - MIR3 SINE MIR -6 202 60 252 143 0 0 chr3 18801449 18801491 -208723087 - MIR SINE MIR -174 88 47 1080 226 190 26 chr3 18802466 18803154 -208721424 + L2 LINE L2 2463 3292 -21 1989 144 17 0 chr3 18803154 18803446 -208721132 - AluJo SINE Alu -15 297 1 1080 226 190 26 chr3 18803446 18803473 -208721105 + L2 LINE L2 3292 3313 0 2039 159 0 3 chr3 18803734 18804043 -208720535 + AluSx SINE Alu 3 310 -2 1095 141 63 74 chr3 18804150 18804377 -208720201 + MER33 DNA MER1_type 1 211 -2374 1715 168 13 30 chr3 18804377 18804680 -208719898 - AluJo SINE Alu -14 298 1 1095 141 63 74 chr3 18804680 18804748 -208719830 + MER33 DNA MER1_type 211 278 -46 393 284 89 35 chr3 18804907 18805076 -208719502 + L3 LINE CR1 1301 1478 -99 813 191 28 51 chr3 18805109 18805287 -208719291 + MER5A DNA MER1_type 7 180 -9 2567 43 13 3 chr3 18805291 18805592 -208718986 + AluY SINE Alu 1 304 -7 214 233 0 0 chr3 18805598 18805641 -208718937 + MIR SINE MIR 218 260 -2 244 270 203 27 chr3 18806021 18806169 -208718409 + MIR SINE MIR 82 255 -7 2300 107 10 3 chr3 18806315 18806623 -208717955 - AluSx SINE Alu -2 310 1 463 291 0 4 chr3 18806717 18806853 -208717725 - MIR SINE MIR -65 143 19 241 224 30 60 chr3 18807045 18807112 -208717466 + MIR SINE MIR 100 164 -98 2168 104 52 0 chr3 18807278 18807566 -208717012 - AluSx SINE Alu -9 303 1 22 0 0 0 chr3 18807571 18807593 -208716985 + AT_rich Low_complexity Low_complexity 1 22 0 2368 71 20 7 chr3 18807976 18808272 -208716306 - AluY SINE Alu -11 300 1 1660 163 4 14 chr3 18808274 18808550 -208716028 - AluJb SINE Alu -21 291 19 1852 181 34 32 chr3 18808651 18809093 -208715485 - pTR5 LTR ERV1 -1254 1184 742 1108 174 0 20 chr3 18809182 18809377 -208715201 + AluJo SINE Alu 5 195 -117 225 276 153 0 chr3 18809446 18809544 -208715034 - MER113 DNA MER1_type? -31 490 378 875 194 55 0 chr3 18809544 18809709 -208714869 + MIR SINE MIR 3 176 -86 642 228 14 84 chr3 18809745 18810030 -208714548 - MER113 DNA MER1_type? -137 384 120 1406 59 0 0 chr3 18810038 18810208 -208714370 + L1PA11 LINE L1 6002 6171 -3 25 31 0 0 chr3 18810211 18810243 -208714335 + AT_rich Low_complexity Low_complexity 1 32 0 8322 56 4 10 chr3 18810267 18811280 -208713298 + LTR13 LTR ERVK 1 1007 0 2231 118 17 0 chr3 18811309 18811606 -208712972 + AluSx SINE Alu 3 304 -8 271 189 44 22 chr3 18811608 18811698 -208712880 - MER113 DNA MER1_type? -422 99 8 266 280 133 36 chr3 18811946 18812039 -208712539 + L1MC5 LINE L1 7612 7695 -266 2142 133 3 0 chr3 18812039 18812332 -208712246 + AluSx SINE Alu 1 294 -18 266 280 133 36 chr3 18812332 18812517 -208712061 + L1MC5 LINE L1 7695 7917 -44 463 236 5 5 chr3 18812827 18812966 -208711612 + GA-rich Low_complexity Low_complexity 1 139 -480 2285 169 69 5 chr3 18812966 18813399 -208711179 - LOR1b LTR ERV1 0 461 1 463 236 5 5 chr3 18813399 18813446 -208711132 + GA-rich Low_complexity Low_complexity 138 619 0 1603 195 83 5 chr3 18813763 18814201 -208710377 - MLT2B1 LTR ERVL 0 520 2 514 258 106 35 chr3 18814307 18814505 -208710073 - MIR SINE MIR -37 225 14 308 331 75 30 chr3 18814736 18814869 -208709709 + MIR3 SINE MIR 8 146 -62 241 234 0 0 chr3 18815378 18815425 -208709153 - L2 LINE L2 -19 3294 3248 2197 101 59 42 chr3 18815637 18815995 -208708583 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr3 18816073 18816094 -208708484 + AT_rich Low_complexity Low_complexity 1 21 0 374 214 36 29 chr3 18816126 18816266 -208708312 - L1ME4a LINE L1 -30 6091 5951 231 292 0 0 chr3 18816863 18816928 -208707650 - MER58 DNA MER1_type 0 2420 2356 192 40 0 0 chr3 18816944 18816969 -208707609 + (TGG)n Simple_repeat Simple_repeat 3 27 0 1841 184 18 21 chr3 18816971 18817356 -208707222 + MER65C LTR ERV1 78 461 0 261 261 0 46 chr3 18817388 18817453 -208707125 - MER58 DNA MER1_type -166 58 1 242 229 0 0 chr3 18817856 18817904 -208706674 + L1MC3 LINE L1 4284 4331 -1815 2380 79 0 3 chr3 18817910 18818202 -208706376 - AluY SINE Alu -15 296 6 21 36 0 0 chr3 18818202 18818230 -208706348 + AT_rich Low_complexity Low_complexity 1 28 0 1982 93 0 4 chr3 18818252 18818511 -208706067 + AluY SINE Alu 54 311 0 2614 175 33 32 chr3 18818559 18818600 -208705978 + L1MC3 LINE L1 4964 5003 -1143 1803 162 53 3 chr3 18818600 18818884 -208705694 + AluSx SINE Alu 1 298 -14 2614 175 33 32 chr3 18818884 18819027 -208705551 + L1MC3 LINE L1 5003 5144 -1002 2293 97 0 0 chr3 18819027 18819345 -208705233 - AluSc SINE Alu 0 309 1 2614 175 33 32 chr3 18819345 18819610 -208704968 + L1MC3 LINE L1 5144 4985 -1161 2318 86 20 0 chr3 18819610 18819902 -208704676 - AluSx SINE Alu -14 298 1 2614 175 33 32 chr3 18819902 18820323 -208704255 + L1MC3 LINE L1 4984 5403 -743 2761 137 169 20 chr3 18820367 18820922 -208703656 - MER67B LTR ERV1 -22 639 2 328 307 49 40 chr3 18822401 18822568 -208702010 - MIR SINE MIR -60 148 18 1141 197 5 23 chr3 18822686 18822904 -208701674 + AluJo SINE Alu 1 214 -98 273 146 0 0 chr3 18822906 18822947 -208701631 + AluJo/FLAM SINE Alu 82 122 -180 2190 108 0 3 chr3 18822947 18823242 -208701336 - AluSc SINE Alu -15 294 1 2614 162 39 25 chr3 18823244 18823507 -208701071 + L1MC3 LINE L1 5138 4990 -1156 2318 86 20 0 chr3 18823507 18823799 -208700779 - AluSx SINE Alu -14 298 1 2614 162 39 25 chr3 18823799 18824220 -208700358 + L1MC3 LINE L1 4989 5403 -743 2761 137 169 20 chr3 18824264 18824819 -208699759 - MER67B LTR ERV1 -22 639 2 249 33 0 0 chr3 18824819 18824849 -208699729 + (TCCCC)n Simple_repeat Simple_repeat 1 30 0 2198 120 10 0 chr3 18824849 18825150 -208699428 - AluSq SINE Alu -9 304 1 2275 82 0 3 chr3 18825187 18825479 -208699099 - AluY SINE Alu -20 291 1 2122 190 11 25 chr3 18825480 18825923 -208698655 + L1MC3 LINE L1 5845 6281 -1504 1142 201 137 90 chr3 18825955 18826422 -208698156 - MER41B LTR ERV1 -34 601 113 6199 144 96 76 chr3 18826422 18826978 -208697600 + L1MC3 LINE L1 6276 6820 -965 423 0 0 0 chr3 18826978 18827025 -208697553 + (CA)n Simple_repeat Simple_repeat 2 48 0 6199 144 96 76 chr3 18827025 18827249 -208697329 + L1MC3 LINE L1 6820 7038 -747 335 286 0 0 chr3 18827249 18827340 -208697238 + MLT1F1 LTR MaLR 35 125 -442 6199 144 96 76 chr3 18827340 18827635 -208696943 + L1MC3 LINE L1 7038 7326 -459 2289 113 24 34 chr3 18827635 18828014 -208696564 + THE1C LTR MaLR 1 375 0 6199 144 96 76 chr3 18828014 18828092 -208696486 + L1MC3 LINE L1 7326 7401 -384 2412 95 0 9 chr3 18828092 18828407 -208696171 + AluSx SINE Alu 1 312 0 6199 144 96 76 chr3 18828407 18828641 -208695937 + L1MC3 LINE L1 7401 7785 0 5582 170 38 142 chr3 18828614 18829013 -208695565 + L1MC4a LINE L1 5263 5702 -2106 * 889 198 64 0 chr3 18829013 18829185 -208695393 + AluJb SINE Alu 118 300 -12 5582 170 38 142 chr3 18829185 18829999 -208694579 + L1MC4a LINE L1 5702 6396 -1412 2265 110 3 0 chr3 18829999 18830298 -208694280 + AluSx SINE Alu 1 300 -12 5582 170 38 142 chr3 18830298 18830826 -208693752 + L1MC4a LINE L1 6396 6977 -831 441 0 0 0 chr3 18830848 18830897 -208693681 + (TTA)n Simple_repeat Simple_repeat 3 51 0 862 137 0 30 chr3 18832292 18832423 -208692155 - AluJb SINE Alu -185 127 1 1918 192 55 101 chr3 18832425 18832521 -208692057 + L1MC4a LINE L1 6969 7068 -740 2050 177 0 0 chr3 18832521 18832831 -208691747 + AluJb SINE Alu 1 310 -2 1918 192 55 101 chr3 18832831 18833426 -208691152 + L1MC4a LINE L1 7068 7628 -180 2355 95 0 0 chr3 18833426 18833720 -208690858 - AluSx SINE Alu -18 294 1 835 128 35 35 chr3 18833720 18833861 -208690717 - AluJo SINE Alu -166 146 6 1259 247 29 50 chr3 18833861 18834110 -208690468 - L1ME3 LINE L1 -217 5945 5692 2203 130 0 0 chr3 18834110 18834411 -208690167 - AluSq SINE Alu -12 301 1 1259 247 29 50 chr3 18834411 18834595 -208689983 - L1ME3 LINE L1 -470 5692 5535 1972 160 13 0 chr3 18834595 18834901 -208689677 + AluJb SINE Alu 1 310 -2 1259 247 29 50 chr3 18834901 18834964 -208689614 - L1ME3 LINE L1 -627 5535 5472 608 308 72 21 chr3 18834964 18835243 -208689335 + L2 LINE L2 2193 2485 -829 189 74 0 0 chr3 18835342 18835369 -208689209 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1936 117 30 0 chr3 18835381 18835647 -208688931 - AluSx SINE Alu -38 274 1 244 157 270 22 chr3 18835657 18835746 -208688832 - L1ME3 LINE L1 -7 6163 6052 1129 152 0 0 chr3 18835756 18835921 -208688657 + AluJb SINE Alu 132 296 -16 395 212 61 68 chr3 18836941 18837073 -208687505 - MIR3 SINE MIR -2 206 76 418 238 51 75 chr3 18837084 18837253 -208687325 - MIR SINE MIR -25 183 19 761 281 18 23 chr3 18837383 18837600 -208686978 + MIR SINE MIR 35 250 -12 216 323 149 29 chr3 18837631 18837907 -208686671 + L2 LINE L2 2953 3261 -11 * 312 279 161 7 chr3 18837890 18838087 -208686491 - MIR SINE MIR -15 247 23 216 279 0 16 chr3 18838149 18838210 -208686368 - L3b LINE CR1 -71 1512 1453 391 374 5 15 chr3 18838644 18838839 -208685739 - MIR SINE MIR -65 197 5 183 294 31 150 chr3 18839072 18839365 -208685213 - L2 LINE L2 -49 3223 2966 585 227 147 90 chr3 18839964 18840133 -208684445 - MER102a DNA MER1_type -1100 317 159 2145 128 20 0 chr3 18840133 18840439 -208684139 - AluSx SINE Alu 0 312 1 585 227 147 90 chr3 18840439 18840451 -208684127 - MER102a DNA MER1_type -1258 159 149 2321 116 0 0 chr3 18840451 18840754 -208683824 - AluSx SINE Alu -9 303 1 585 227 147 90 chr3 18840754 18840871 -208683707 - MER102a DNA MER1_type -1268 149 1 876 203 68 0 chr3 18841152 18841329 -208683249 + MER5A DNA MER1_type 1 189 0 2440 67 0 0 chr3 18841462 18841767 -208682811 + AluY SINE Alu 1 305 0 506 227 36 0 chr3 18841870 18841980 -208682598 - MIR SINE MIR -89 173 60 1593 116 81 149 chr3 18842117 18842405 -208682173 - Tigger3(Golem) DNA MER2_type -3 3025 2719 2561 56 0 10 chr3 18842405 18842708 -208681870 - AluY SINE Alu -11 300 1 1593 116 81 149 chr3 18842708 18842789 -208681789 - Tigger3(Golem) DNA MER2_type -309 2719 1 259 196 0 0 chr3 18842790 18842836 -208681742 + LTR16C LTR ERVL 435 480 -11 1478 221 115 17 chr3 18843176 18843584 -208680994 - LTR16C LTR ERVL -3 488 41 2055 125 0 32 chr3 18843588 18843901 -208680677 + AluSq SINE Alu 1 303 -10 264 234 62 0 chr3 18844093 18844157 -208680421 - MER5B DNA MER1_type 0 178 111 1720 254 112 35 chr3 18844366 18844694 -208679884 - MER20B DNA MER1_type -3 780 479 2349 123 0 0 chr3 18844694 18845004 -208679574 - AluSx SINE Alu -2 310 1 1720 254 112 35 chr3 18845004 18845363 -208679215 - MER20B DNA MER1_type -304 479 40 199 191 40 143 chr3 18845376 18845480 -208679098 - L2 LINE L2 -2521 793 703 1481 175 90 0 chr3 18845480 18845748 -208678830 + AluJo SINE Alu 15 306 -6 199 191 40 143 chr3 18845748 18845769 -208678809 - L2 LINE L2 -2611 703 681 * 253 272 82 89 chr3 18845752 18845910 -208678668 - MER5B DNA MER1_type -20 158 2 632 219 71 47 chr3 18845919 18846088 -208678490 + MER5B DNA MER1_type 1 173 -5 428 247 173 56 chr3 18846107 18846269 -208678309 - MER5A DNA MER1_type -5 184 4 978 152 11 42 chr3 18846280 18846471 -208678107 + MER5A DNA MER1_type 1 185 -4 335 257 35 44 chr3 18846947 18847060 -208677518 - MIR SINE MIR -126 136 25 355 237 15 74 chr3 18847220 18847355 -208677223 - MLT1J LTR MaLR -286 225 99 197 325 86 57 chr3 18847954 18848360 -208676218 - L2 LINE L2 -25 3247 2830 236 290 104 50 chr3 18848491 18848712 -208675866 - L2 LINE L2 -769 2545 2313 * 284 223 106 64 chr3 18848708 18848802 -208675776 + L2 LINE L2 3146 3243 -29 312 271 52 0 chr3 18850094 18850190 -208674388 - MER115 DNA AcHobo -80 613 513 527 237 199 5 chr3 18850203 18850389 -208674189 - L1ME1 LINE L1 -17 6149 5928 776 272 183 44 chr3 18850404 18850863 -208673715 - MER115 DNA AcHobo -168 525 3 2226 111 0 3 chr3 18850988 18851286 -208673292 - AluSc SINE Alu -12 297 1 534 287 97 51 chr3 18851298 18851336 -208673242 + L2 LINE L2 2898 2933 -380 2547 53 3 3 chr3 18851336 18851638 -208672940 - AluY SINE Alu -9 302 1 534 287 97 51 chr3 18851638 18851930 -208672648 + L2 LINE L2 2933 3243 -70 996 168 15 30 chr3 18851953 18852156 -208672422 - MER3 DNA MER1_type 0 209 10 2517 67 0 0 chr3 18852222 18852519 -208672059 - AluY SINE Alu -14 297 1 1062 184 10 15 chr3 18852521 18852727 -208671851 - AluSg/x SINE Alu -10 300 96 1402 180 75 0 chr3 18852913 18853218 -208671360 + L1MB5 LINE L1 5847 6174 0 2752 17 0 0 chr3 18853277 18853575 -208671003 - AluY SINE Alu -3 308 11 683 286 44 16 chr3 18853778 18854026 -208670552 - MIR SINE MIR 0 262 8 266 194 97 65 chr3 18854019 18854090 -208670488 - MIR SINE MIR -36 226 150 * 222 0 35 0 chr3 18854096 18854125 -208670453 + (TTTA)n Simple_repeat Simple_repeat 3 180 0 2144 106 25 0 chr3 18854125 18854401 -208670177 - AluSp SINE Alu -27 286 1 266 194 97 65 chr3 18854401 18854422 -208670156 - MIR SINE MIR -112 150 131 2615 52 0 10 chr3 18854458 18854765 -208669813 - AluY SINE Alu -7 304 1 1135 83 0 0 chr3 18854782 18854915 -208669663 - AluY SINE Alu -178 133 1 272 27 27 0 chr3 18854915 18854952 -208669626 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 874 138 36 7 chr3 18854953 18855091 -208669487 - AluJb SINE Alu -50 262 121 227 291 82 55 chr3 18855114 18855224 -208669354 + MIR SINE MIR 53 165 -97 2353 103 0 7 chr3 18855281 18855583 -208668995 + AluSx SINE Alu 1 300 -12 922 231 86 101 chr3 18855610 18855995 -208668583 + MER45C DNA AcHobo 1 379 -574 1075 270 175 11 chr3 18856025 18856380 -208668198 + MER45C DNA AcHobo 448 860 -93 2165 123 6 19 chr3 18856380 18856696 -208667882 - AluSx SINE Alu 0 312 1 2266 121 0 3 chr3 18856718 18857023 -208667555 - AluSx SINE Alu -8 304 1 349 231 120 0 chr3 18857032 18857140 -208667438 - Charlie8 DNA MER1_type -2296 121 1 390 333 79 11 chr3 18857422 18857599 -208666979 + MER5A DNA MER1_type 1 189 0 2358 78 3 0 chr3 18857732 18858036 -208666542 + AluY SINE Alu 1 305 0 479 227 36 0 chr3 18858139 18858249 -208666329 - MIR SINE MIR -89 173 60 1601 116 81 149 chr3 18858386 18858674 -208665904 - Tigger3(Golem) DNA MER2_type -3 3026 2720 2149 112 0 10 chr3 18858674 18858977 -208665601 - AluY SINE Alu -11 300 1 1601 116 81 149 chr3 18858977 18859058 -208665520 - Tigger3(Golem) DNA MER2_type -309 2720 1 266 196 0 0 chr3 18859059 18859105 -208665473 + LTR16C LTR ERVL 435 480 -11 1532 221 115 17 chr3 18859445 18859853 -208664725 - LTR16C LTR ERVL -3 488 41 2255 99 0 32 chr3 18859857 18860170 -208664408 + AluSq SINE Alu 1 303 -10 249 216 0 0 chr3 18860362 18860413 -208664165 - MER5B DNA MER1_type 0 178 128 1790 254 112 35 chr3 18860635 18860963 -208663615 - MER20B DNA MER1_type -3 780 479 2351 123 0 0 chr3 18860963 18861273 -208663305 - AluSx SINE Alu -2 310 1 1790 254 112 35 chr3 18861273 18861632 -208662946 - MER20B DNA MER1_type -304 479 40 1482 175 90 0 chr3 18861749 18862017 -208662561 + AluJo SINE Alu 15 306 -6 219 272 82 89 chr3 18862021 18862179 -208662399 - MER5B DNA MER1_type -20 158 2 590 219 71 47 chr3 18862188 18862357 -208662221 + MER5B DNA MER1_type 1 173 -5 392 296 148 31 chr3 18862376 18862538 -208662040 - MER5A DNA MER1_type -5 184 4 917 152 11 42 chr3 18862549 18862740 -208661838 + MER5A DNA MER1_type 1 185 -4 308 266 37 37 chr3 18863216 18863325 -208661253 - MIR SINE MIR -126 136 28 225 262 78 57 chr3 18863325 18863466 -208661112 - MLT1L LTR MaLR 0 615 472 377 237 15 74 chr3 18863489 18863624 -208660954 - MLT1J LTR MaLR -286 225 99 252 341 78 50 chr3 18864223 18864481 -208660097 - L2 LINE L2 -25 3247 2983 221 294 104 50 chr3 18864760 18864981 -208659597 - L2 LINE L2 -769 2545 2313 * 254 223 106 64 chr3 18864977 18865071 -208659507 + L2 LINE L2 3146 3243 -29 320 271 52 0 chr3 18866363 18866459 -208658119 - MER115 DNA AcHobo -80 613 513 548 253 194 0 chr3 18866472 18866658 -208657920 - L1ME1 LINE L1 -17 6149 5928 903 277 183 44 chr3 18866673 18867132 -208657446 - MER115 DNA AcHobo -168 525 3 2250 97 0 39 chr3 18867257 18867567 -208657011 - AluSg SINE Alu -12 298 1 2274 98 9 32 chr3 18867578 18867894 -208656684 - AluSx SINE Alu -3 309 1 1243 137 0 0 chr3 18867901 18868076 -208656502 - AluSg/x SINE Alu -4 308 134 2754 17 0 0 chr3 18868076 18868370 -208656208 - AluYb8 SINE Alu -5 313 20 431 274 32 14 chr3 18868373 18868549 -208656029 - MIR SINE MIR -43 219 38 340 288 79 7 chr3 18869281 18869420 -208655158 - MIR SINE MIR -79 183 35 347 329 53 7 chr3 18870019 18870171 -208654407 + MIR SINE MIR 34 192 -70 467 333 25 0 chr3 18870512 18870671 -208653907 + MIR SINE MIR 86 248 -14 221 270 157 11 chr3 18871304 18871393 -208653185 + MIR SINE MIR 81 182 -80 962 146 0 7 chr3 18873827 18873971 -208650607 + FLAM_C SINE Alu 1 143 0 250 235 44 0 chr3 18875312 18875380 -208649198 + MIR SINE MIR 80 150 -112 277 265 25 63 chr3 18876011 18876160 -208648418 + MIR SINE MIR 37 145 -63 327 252 195 8 chr3 18876510 18876633 -208647945 + MIR SINE MIR 2 147 -115 2448 87 0 0 chr3 18876637 18876936 -208647642 + AluSx SINE Alu 1 299 -13 1180 158 0 0 chr3 18876936 18877101 -208647477 + AluSq SINE Alu 134 298 -15 209 284 14 27 chr3 18877365 18877439 -208647139 - MIR SINE MIR -15 247 175 3310 193 75 95 chr3 18877480 18877984 -208646594 - L1MC4 LINE L1 -600 7442 6930 1721 164 14 21 chr3 18877984 18878270 -208646308 - AluJb SINE Alu -14 298 15 3310 193 75 95 chr3 18878270 18879001 -208645577 - L1MC4 LINE L1 -1112 6930 6228 1856 115 30 54 chr3 18879001 18879135 -208645443 + AluSx SINE Alu 5 141 -171 2639 43 0 7 chr3 18879135 18879440 -208645138 + AluY SINE Alu 1 303 -8 1856 115 30 54 chr3 18879440 18879601 -208644977 + AluSx SINE Alu 141 293 -19 3310 193 75 95 chr3 18879601 18879710 -208644868 - L1MC4 LINE L1 -1814 6228 6118 883 120 0 8 chr3 18879712 18879837 -208644741 + FLAM_C SINE Alu 1 124 -9 712 0 0 0 chr3 18879847 18879932 -208644646 + L1PA6 LINE L1 6064 6148 -6 1393 187 139 17 chr3 18879954 18880307 -208644271 - MSTD LTR MaLR 0 396 1 2334 109 3 0 chr3 18880317 18880621 -208643957 + AluSx SINE Alu 3 307 -5 213 259 17 0 chr3 18880657 18880715 -208643863 + MIR SINE MIR 80 138 -124 * 252 288 0 12 chr3 18880713 18880793 -208643785 - MIR SINE MIR 0 262 184 350 241 200 14 chr3 18880839 18880984 -208643594 - MIR SINE MIR -72 190 19 574 278 43 22 chr3 18881412 18881642 -208642936 + MIR SINE MIR 21 255 -7 282 172 250 0 chr3 18881775 18881839 -208642739 + Tigger5 DNA MER2_type 1 80 -2243 276 254 0 0 chr3 18881874 18881929 -208642649 + Tigger5 DNA MER2_type 2269 2323 0 1793 129 90 7 chr3 18882115 18882393 -208642185 - AluJb SINE Alu -11 301 1 456 271 9 98 chr3 18882393 18882514 -208642064 + MIR SINE MIR 45 138 -124 2359 98 0 10 chr3 18882514 18882819 -208641759 - AluSc SINE Alu -7 302 1 456 271 9 98 chr3 18882819 18882922 -208641656 + MIR SINE MIR 138 249 -13 1204 137 17 0 chr3 18883512 18883687 -208640891 + AluJb SINE Alu 121 298 -14 2357 98 0 13 chr3 18884025 18884330 -208640248 - AluSx SINE Alu -11 301 1 1686 174 80 22 chr3 18884330 18884818 -208639760 - L1MB3 LINE L1 -40 6143 5577 2340 106 0 13 chr3 18884823 18885135 -208639443 - AluSx SINE Alu -4 308 1 256 281 74 25 chr3 18885211 18885332 -208639246 - L1ME4a LINE L1 -16 6105 5979 271 234 0 0 chr3 18885604 18885668 -208638910 - L1ME4a LINE L1 -2062 5746 5683 382 241 118 94 chr3 18886659 18886871 -208637707 + Charlie8 DNA MER1_type 21 237 -2180 482 248 134 15 chr3 18887334 18887530 -208637048 - MIR SINE MIR -15 247 28 203 269 15 45 chr3 18887731 18887798 -208636780 + L2 LINE L2 3249 3313 0 357 250 155 0 chr3 18888257 18888373 -208636205 + MER46C DNA MER2_type 6 139 -199 514 161 11 0 chr3 18888389 18888476 -208636102 - MER2 DNA MER2_type -257 88 1 658 227 117 0 chr3 18888488 18888651 -208635927 + MER46C DNA MER2_type 157 338 0 346 217 178 38 chr3 18888653 18888810 -208635768 - MIR SINE MIR -71 191 13 531 138 64 0 chr3 18890530 18890624 -208633954 + AluSg/x SINE Alu 190 289 -20 1413 158 65 15 chr3 18890846 18891106 -208633472 + AluJb SINE Alu 19 291 -21 253 309 74 0 chr3 18892111 18892192 -208632386 - MIR SINE MIR -65 197 111 662 226 0 20 chr3 18893640 18893786 -208630792 + FAM SINE Alu 1 143 -42 1951 169 3 0 chr3 18893813 18894115 -208630463 + AluSx SINE Alu 1 303 -9 286 69 0 69 chr3 18894321 18894379 -208630199 + MER4B LTR ERV1 1 54 -556 1529 148 139 3 chr3 18894392 18894695 -208629883 + MER4E LTR ERV1 415 758 -8 191 220 77 5 chr3 18896283 18896392 -208628186 + MIR SINE MIR 86 248 -14 226 324 14 0 chr3 18897671 18897745 -208626833 - MIR SINE MIR -78 184 110 897 147 0 0 chr3 18897792 18897921 -208626657 - FLAM_A SINE Alu -6 136 8 495 175 0 35 chr3 18897935 18898049 -208626529 - AluJb SINE Alu 0 312 203 1875 180 0 0 chr3 18898117 18898411 -208626167 + AluJo SINE Alu 1 294 -18 890 222 248 4 chr3 18898414 18898680 -208625898 + L1ME LINE L1 5294 5624 -542 2185 121 0 3 chr3 18898680 18898977 -208625601 + AluSq SINE Alu 1 296 -17 694 204 0 0 chr3 18899367 18899499 -208625079 + AluJo/FLAM SINE Alu 1 132 -170 1135 234 8 11 chr3 18899500 18899761 -208624817 + AluJo SINE Alu 1 260 -52 2071 144 28 3 chr3 18900280 18900635 -208623943 + THE1B LTR MaLR 1 364 0 548 96 24 0 chr3 18900635 18900718 -208623860 + THE1B-int LTR MaLR 1 85 -1495 1728 161 99 28 chr3 18900718 18901288 -208623290 - MER51B LTR ERV1 -1 376 1 459 61 15 0 chr3 18901288 18901354 -208623224 + THE1B-int LTR MaLR 87 153 -1427 9228 98 42 44 chr3 18901354 18902841 -208621737 + THE1B-int LTR MaLR 97 1580 0 2236 132 22 0 chr3 18902841 18903197 -208621381 + THE1B LTR MaLR 1 364 0 572 277 93 6 chr3 18903260 18903494 -208621084 + MIR SINE MIR 4 259 -3 247 267 0 0 chr3 18903747 18903822 -208620756 - L1ME4a LINE L1 -1 6120 6046 332 316 43 32 chr3 18903970 18904001 -208620577 - L1ME4a LINE L1 0 6121 6092 2335 107 3 0 chr3 18904001 18904301 -208620277 + AluSp SINE Alu 1 301 -12 332 316 43 32 chr3 18904301 18904456 -208620122 - L1ME4a LINE L1 -29 6092 5933 279 0 0 0 chr3 18904685 18904716 -208619862 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 7504 52 16 9 chr3 18904725 18906253 -208618325 - SVA Other Other -799 1386 5 305 280 0 40 chr3 18906675 18906775 -208617803 + MIR SINE MIR 35 130 -132 298 167 0 0 chr3 18907403 18907457 -208617121 + L1MD1 LINE L1 6116 6169 -73 400 329 62 18 chr3 18907533 18907601 -208616977 - L1ME4a LINE L1 -320 5801 5737 2281 113 0 3 chr3 18907601 18907912 -208616666 - AluSq SINE Alu -3 310 1 400 329 62 18 chr3 18907912 18908068 -208616510 - L1ME4a LINE L1 -384 5737 5567 189 313 0 16 chr3 18908182 18908246 -208616332 + L2 LINE L2 3210 3272 0 2357 69 10 3 chr3 18908589 18908895 -208615683 + AluSp SINE Alu 1 308 -5 342 311 66 8 chr3 18909819 18909983 -208614595 - MIR SINE MIR -55 207 29 257 238 16 16 chr3 18910448 18910511 -208614067 - MIR SINE MIR 0 262 200 482 310 58 0 chr3 18910906 18911061 -208613517 - MIR SINE MIR -78 184 21 771 202 0 0 chr3 18911674 18911803 -208612775 - FLAM_C SINE Alu -14 129 1 261 0 0 0 chr3 18911815 18911844 -208612734 + (T)n Simple_repeat Simple_repeat 1 29 0 2285 95 0 0 chr3 18918697 18919002 -208605576 + AluY SINE Alu 1 305 -6 216 306 0 47 chr3 18920128 18920213 -208604365 - MIR SINE MIR -117 145 65 1042 192 138 100 chr3 18920403 18920469 -208604109 + LTR10B LTR ERV1 1 63 -484 2434 42 0 0 chr3 18920469 18920776 -208603802 + AluY SINE Alu 1 307 0 1042 192 138 100 chr3 18920776 18921230 -208603348 + LTR10B LTR ERV1 63 542 -5 2482 55 3 0 chr3 18922128 18922436 -208602142 + AluY SINE Alu 1 309 -2 199 322 35 11 chr3 18922802 18922889 -208601689 + L3 LINE CR1 1134 1222 -355 289 286 171 6 chr3 18923054 18923229 -208601349 + L2 LINE L2 2939 3142 -171 6184 103 66 10 chr3 18923515 18924418 -208600160 + LTR13 LTR ERVK 1 954 0 578 216 18 0 chr3 18927050 18927161 -208597417 - L1MA7 LINE L1 -6 6285 6173 673 257 36 28 chr3 18927161 18927410 -208597168 + L1MA7 LINE L1 5895 6145 -146 229 279 29 0 chr3 18929488 18929556 -208595022 + L2 LINE L2 3242 3311 -2 180 317 58 48 chr3 18930535 18930639 -208593939 - MIR3 SINE MIR -7 201 97 231 287 35 11 chr3 18930773 18930860 -208593718 + L3 LINE CR1 1134 1222 -355 254 273 91 9 chr3 18931175 18931285 -208593293 + L2 LINE L2 3024 3142 -171 180 297 27 14 chr3 18933101 18933175 -208591403 + L2 LINE L2 2906 2980 -333 360 0 0 0 chr3 18933457 18933497 -208591081 + (TG)n Simple_repeat Simple_repeat 2 41 0 3295 98 35 8 chr3 18934364 18934844 -208589734 - LTR15 LTR ERV1 0 493 1 330 359 62 0 chr3 18935047 18935175 -208589403 + MER5B DNA MER1_type 3 138 -40 2256 109 0 13 chr3 18935643 18935956 -208588622 - AluSx SINE Alu -2 310 2 1186 199 53 115 chr3 18936190 18936484 -208588094 - L1MB4 LINE L1 0 6180 5937 1634 176 49 0 chr3 18936484 18936768 -208587810 - AluJo SINE Alu -14 298 1 1186 199 53 115 chr3 18936768 18937023 -208587555 - L1MB4 LINE L1 -243 5937 5668 827 218 0 0 chr3 18937060 18937202 -208587376 + FRAM SINE Alu 16 157 -19 1000 204 52 126 chr3 18937245 18937423 -208587155 + MLT1B LTR MaLR 1 191 -199 2212 94 3 0 chr3 18937423 18937720 -208586858 + AluSx SINE Alu 1 298 -14 1000 204 52 126 chr3 18937720 18937962 -208586616 + MLT1B LTR MaLR 191 390 0 4029 136 87 48 chr3 18938396 18939658 -208584920 + pTR5 LTR ERV1 741 2295 -143 199 253 46 81 chr3 18940109 18940196 -208584382 - MIR3 SINE MIR -34 174 91 22 56 0 0 chr3 18940412 18940448 -208584130 + AT_rich Low_complexity Low_complexity 1 36 0 313 315 92 15 chr3 18940927 18941057 -208583521 + L1MC4a LINE L1 6064 6203 -1605 892 329 38 11 chr3 18941059 18941530 -208583048 + ERVL LTR ERVL 4582 5065 -699 715 229 0 8 chr3 18941693 18941824 -208582754 + FRAM SINE Alu 1 130 -46 287 239 11 22 chr3 18942342 18942434 -208582144 + LTR41 LTR ERVL 17 107 -666 396 364 48 0 chr3 18942842 18943007 -208581571 - L1M4 LINE L1 -1232 4914 4742 504 343 171 0 chr3 18943135 18943249 -208581329 - L1M4 LINE L1 -1575 4571 4478 1657 182 17 3 chr3 18943249 18943546 -208581032 - AluJo SINE Alu -11 301 1 504 343 171 0 chr3 18943546 18943740 -208580838 - L1M4 LINE L1 -1668 4478 4210 303 174 16 36 chr3 18943740 18943822 -208580756 + AluJ/FLAM SINE Alu 5 60 -242 1226 311 118 62 chr3 18944228 18944634 -208579944 - L1M4 LINE L1 -2509 3637 3255 2101 136 0 3 chr3 18944634 18944944 -208579634 - AluSx SINE Alu -3 309 1 1226 311 118 62 chr3 18944944 18945772 -208578806 - L1M4 LINE L1 -2891 3255 2199 2307 233 19 42 chr3 18946400 18946967 -208577611 - MLT2B3 LTR ERVL 0 554 1 215 269 6 50 chr3 18947810 18947992 -208576586 + C-rich Low_complexity Low_complexity 4 177 0 1071 163 24 14 chr3 18948269 18948478 -208576100 - AluJb SINE Alu -17 295 85 251 288 9 27 chr3 18949263 18949374 -208575204 - MER103 DNA DNA -57 109 1 1445 164 53 4 chr3 18950057 18950320 -208574258 + AluJb SINE Alu 1 276 -36 296 365 153 6 chr3 18950320 18951000 -208573578 - L2 LINE L2 -634 2680 1901 261 75 0 0 chr3 18955479 18955519 -208569059 + (TA)n Simple_repeat Simple_repeat 1 40 0 195 42 0 0 chr3 18956213 18956237 -208568341 + (TGG)n Simple_repeat Simple_repeat 2 25 0 309 82 0 0 chr3 18957671 18957720 -208566858 + (A)n Simple_repeat Simple_repeat 1 49 0 1095 223 38 0 chr3 18961971 18962182 -208562396 + MER20 DNA MER1_type 1 219 0 404 283 169 22 chr3 18965098 18965282 -208559296 - Charlie8 DNA MER1_type -2206 211 1 229 323 81 0 chr3 18966137 18966261 -208558317 - MIR SINE MIR -93 169 36 383 288 169 0 chr3 18967344 18967521 -208557057 - MIR SINE MIR -34 228 22 1430 12 0 0 chr3 18967562 18967725 -208556853 + AluYb8 SINE Alu 155 317 -1 621 291 92 46 chr3 18967804 18968305 -208556273 + MLT1K LTR MaLR 2 525 -63 248 123 247 27 chr3 18969010 18969083 -208555495 - MIR SINE MIR -128 134 46 343 336 28 0 chr3 18971001 18971108 -208553470 - MIR SINE MIR -36 226 117 308 273 148 8 chr3 18971165 18971293 -208553285 + MIR SINE MIR 47 192 -70 514 344 100 17 chr3 18971568 18971929 -208552649 + L1MC4a LINE L1 5508 5898 -1910 3930 195 20 0 chr3 18972104 18972808 -208551770 - L1MC1 LINE L1 0 6333 5616 26 0 0 0 chr3 18972844 18972870 -208551708 + AT_rich Low_complexity Low_complexity 1 26 0 339 338 20 13 chr3 18973070 18973221 -208551357 + MIR3 SINE MIR 23 174 -34 209 360 35 0 chr3 18973434 18973520 -208551058 - L3 LINE CR1 -329 1248 1160 1792 136 0 21 chr3 18973559 18973845 -208550733 + AluJb SINE Alu 1 280 -32 189 0 0 0 chr3 18973845 18973866 -208550712 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 448 291 72 52 chr3 18974840 18975146 -208549432 - MER113 DNA MER1_type? -99 422 111 378 268 33 0 chr3 18975811 18975950 -208548628 + MLT1J LTR MaLR 63 168 -278 808 261 26 13 chr3 18976528 18976754 -208547824 - MIR SINE MIR -24 238 10 2035 137 3 0 chr3 18981055 18981355 -208543223 + AluSx SINE Alu 1 301 -11 570 225 33 13 chr3 18982199 18982350 -208542228 + Charlie8 DNA MER1_type 39 192 -2225 254 286 48 9 chr3 18983811 18983916 -208540662 + MLT1I LTR MaLR 59 167 -242 301 196 18 0 chr3 18983944 18984000 -208540578 - L2 LINE L2 -1 3312 3256 382 355 113 5 chr3 18984089 18984275 -208540303 + MIR SINE MIR 5 210 -52 224 208 183 0 chr3 18984402 18984509 -208540069 - L2 LINE L2 -252 3061 2922 * 271 309 36 18 chr3 18984501 18984611 -208539967 - MIR SINE MIR -123 139 28 724 248 0 0 chr3 18985204 18985337 -208539241 - FLAM_A SINE Alu 0 133 1 411 220 40 0 chr3 18985702 18985802 -208538776 + MLT1K LTR MaLR 485 588 0 317 305 122 24 chr3 18985889 18986102 -208538476 - L3 LINE CR1 0 1577 1344 189 366 0 24 chr3 18986459 18986541 -208538037 + MIR SINE MIR 155 234 -28 296 367 51 6 chr3 18986875 18987033 -208537545 - L3 LINE CR1 -22 1555 1391 188 369 31 11 chr3 18987382 18987563 -208537015 + MIR SINE MIR 5 259 -3 377 271 16 16 chr3 18987701 18987823 -208536755 - MIR SINE MIR -120 142 21 251 270 14 0 chr3 18988214 18988288 -208536290 + L1ME LINE L1 5582 5656 -506 625 321 51 4 chr3 18988502 18988739 -208535839 - MIR SINE MIR 0 262 15 2336 91 0 0 chr3 18991958 18992256 -208532322 - AluSx SINE Alu -14 298 1 577 258 20 7 chr3 18992525 18992692 -208531886 + MIR SINE MIR 12 181 -58 267 250 13 40 chr3 18992771 18992847 -208531731 - MIR3 SINE MIR -29 179 106 414 312 112 36 chr3 18994759 18995035 -208529543 + L2 LINE L2 3017 3313 0 515 315 43 30 chr3 18997047 18997282 -208527296 + L2 LINE L2 3072 3309 -4 2396 63 0 3 chr3 18997344 18997643 -208526935 + AluY SINE Alu 1 298 -13 1150 235 104 3 chr3 18997720 18998065 -208526513 + MLT1B LTR MaLR 11 390 0 351 337 118 17 chr3 18998067 18998255 -208526323 - MIR SINE MIR -41 167 9 251 380 60 7 chr3 18999023 18999173 -208525405 + MIR3 SINE MIR 19 176 -32 193 323 30 30 chr3 19000410 19000509 -208524069 + L2 LINE L2 2426 2524 -790 255 277 0 43 chr3 19000817 19000911 -208523667 + L1ME LINE L1 5469 5558 -563 394 266 77 24 chr3 19001487 19001656 -208522922 + L1ME LINE L1 5622 5799 -322 356 344 134 16 chr3 19001663 19001849 -208522729 + L3 LINE CR1 863 1070 -507 496 225 110 6 chr3 19001890 19002063 -208522515 - MER117 DNA MER1_type 0 197 7 510 303 196 38 chr3 19002112 19002429 -208522149 + L3 LINE CR1 1192 1558 -19 632 239 60 50 chr3 19003056 19003274 -208521304 + MIR SINE MIR 40 259 -3 217 319 90 52 chr3 19004067 19004221 -208520357 - MIR SINE MIR -58 150 7 191 333 14 14 chr3 19004661 19004730 -208519848 + L3 LINE CR1 983 1051 -526 335 315 52 37 chr3 19005124 19005291 -208519287 - MIR SINE MIR -60 148 18 777 176 8 0 chr3 19005409 19005534 -208519044 + FLAM_C SINE Alu 1 126 -17 1438 193 10 30 chr3 19005548 19005670 -208518908 + AluJo SINE Alu 1 124 -188 2244 90 0 13 chr3 19005670 19005969 -208518609 - AluY SINE Alu -16 295 1 1438 193 10 30 chr3 19005969 19006141 -208518437 + AluJo SINE Alu 124 289 -23 672 169 0 44 chr3 19006027 19006163 -208518415 + FRAM SINE Alu 41 170 -6 1798 146 3 72 chr3 19006164 19006499 -208518079 + AluSx SINE Alu 1 312 0 516 281 180 19 chr3 19007212 19007830 -208516748 + L2 LINE L2 2268 3019 -294 195 344 57 13 chr3 19007831 19007988 -208516590 - L2 LINE L2 -1520 1794 1631 180 318 16 16 chr3 19008015 19008078 -208516500 - L2 LINE L2 -1877 1437 1375 583 294 43 13 chr3 19009569 19009800 -208514778 + L2 LINE L2 3076 3313 0 211 321 66 29 chr3 19009999 19010136 -208514442 - MIR3 SINE MIR -59 149 8 571 335 64 4 chr3 19010933 19011184 -208513394 + Charlie8 DNA MER1_type 11 276 -2141 292 330 19 0 chr3 19011794 19011900 -208512678 + MIR SINE MIR 38 145 -63 829 168 65 0 chr3 19012763 19012948 -208511630 - L1MC1 LINE L1 -30 6303 6107 482 263 8 49 chr3 19012949 19013141 -208511437 - MIR SINE MIR -58 150 2 502 305 73 0 chr3 19013396 19013547 -208511031 + MIR SINE MIR 79 240 -22 215 227 0 5 chr3 19013774 19013830 -208510748 - L2 LINE L2 -11 3302 3206 182 401 29 22 chr3 19014019 19014156 -208510422 - L2 LINE L2 -921 2393 2256 203 273 0 0 chr3 19015191 19015235 -208509343 - L2 LINE L2 -19 3294 3251 206 351 70 9 chr3 19015617 19015731 -208508847 + MIR SINE MIR 87 207 -55 263 321 80 18 chr3 19015925 19016037 -208508541 - MIR SINE MIR -112 150 32 774 255 53 53 chr3 19016767 19017014 -208507564 - MIR SINE MIR -12 250 4 244 310 28 0 chr3 19017023 19017094 -208507484 - MIR3 SINE MIR -27 181 109 266 260 10 70 chr3 19017249 19017349 -208507229 - MIR SINE MIR -1 261 168 369 344 76 8 chr3 19018624 19018755 -208505823 - MIR SINE MIR -102 160 21 315 267 13 0 chr3 19018779 19018854 -208505724 + L2 LINE L2 3196 3271 -1 243 0 0 0 chr3 19019323 19019350 -208505228 + (CA)n Simple_repeat Simple_repeat 2 28 0 343 288 107 37 chr3 19019606 19019774 -208504804 - MIR SINE MIR -67 141 5 220 189 0 0 chr3 19019841 19019878 -208504700 + (CA)n Simple_repeat Simple_repeat 1 37 0 583 207 35 0 chr3 19020873 19020989 -208503589 + L2 LINE L2 3174 3293 -20 183 234 0 0 chr3 19022764 19022841 -208501737 + G-rich Low_complexity Low_complexity 4 80 0 239 223 0 64 chr3 19022910 19023004 -208501574 + G-rich Low_complexity Low_complexity 2 89 0 269 298 0 48 chr3 19023448 19023552 -208501026 - MIR SINE MIR -51 211 113 213 330 156 0 chr3 19023644 19023753 -208500825 + L2 LINE L2 3158 3283 -30 1015 206 20 10 chr3 19024153 19024487 -208500091 + L1MC4a LINE L1 5191 5528 -633 230 275 87 0 chr3 19025068 19025137 -208499441 + MIR SINE MIR 91 165 -97 818 236 16 6 chr3 19025975 19026157 -208498421 + MER58A DNA MER1_type 1 184 -40 294 323 105 8 chr3 19026361 19026609 -208497969 + L1MC4a LINE L1 5630 5901 -1907 291 124 4 89 chr3 19026686 19026764 -208497814 + Alu SINE Alu 238 297 -5 1602 109 35 0 chr3 19026817 19027076 -208497502 + AluSx SINE Alu 55 312 0 1151 192 0 10 chr3 19027137 19027345 -208497233 + AluJb SINE Alu 87 292 -20 394 274 0 28 chr3 19027631 19027737 -208496841 - MIR3 SINE MIR -15 193 91 358 317 38 38 chr3 19028275 19028461 -208496117 + L2 LINE L2 2893 3078 -194 818 65 0 0 chr3 19028662 19028769 -208495809 + L1MA3 LINE L1 6199 6305 0 284 339 115 12 chr3 19028790 19028955 -208495623 - MIR3 SINE MIR -17 191 10 304 335 71 13 chr3 19030022 19030177 -208494401 + MIR SINE MIR 80 243 -19 531 263 163 11 chr3 19030451 19030641 -208493937 - MIR SINE MIR -43 219 1 599 256 107 14 chr3 19030662 19030877 -208493701 - MIR SINE MIR -22 240 6 428 250 76 15 chr3 19030990 19031122 -208493456 + MIR SINE MIR 56 195 -67 326 342 181 0 chr3 19031627 19031820 -208492758 + L2 LINE L2 3086 3313 0 1779 167 0 35 chr3 19032077 19032388 -208492190 + AluJo SINE Alu 1 300 -12 438 333 58 0 chr3 19033130 19033301 -208491277 - MIR SINE MIR -62 200 20 357 198 12 35 chr3 19033311 19033397 -208491181 + MER5A DNA MER1_type 1 84 -105 2189 89 3 29 chr3 19033439 19033755 -208490823 + AluSg SINE Alu 1 308 -2 342 328 8 8 chr3 19033852 19033974 -208490604 - L2 LINE L2 -219 3053 2932 487 255 48 5 chr3 19034176 19034364 -208490214 + MER113 DNA MER1_type? 127 322 -199 256 344 31 49 chr3 19034695 19034858 -208489720 + MER113 DNA MER1_type? 322 481 -40 479 247 115 11 chr3 19035118 19035292 -208489286 - MIR SINE MIR -20 242 51 238 237 54 11 chr3 19035973 19036066 -208488512 + MLT1K LTR MaLR 484 580 -8 589 231 60 17 chr3 19036155 19036341 -208488237 + MIR SINE MIR 2 200 -62 520 188 86 8 chr3 19037262 19037390 -208487188 - Charlie1 DNA MER1_type 0 2761 2624 372 288 9 0 chr3 19037432 19037543 -208487035 - Charlie1 DNA MER1_type -2591 170 59 186 206 0 0 chr3 19037852 19037886 -208486692 - L2 LINE L2 -18 3254 3221 204 360 40 0 chr3 19037886 19037986 -208486592 - MIR SINE MIR -132 130 27 412 330 133 8 chr3 19038619 19038883 -208485695 + L2 LINE L2 2976 3272 0 413 305 104 7 chr3 19039351 19039505 -208485073 - MER91A DNA MER1_type -17 179 11 2593 45 0 0 chr3 19039837 19040145 -208484433 - AluY SINE Alu -3 308 1 286 325 20 66 chr3 19040995 19041146 -208483432 - MIR SINE MIR 0 262 119 263 355 65 16 chr3 19041455 19041579 -208482999 + MIR SINE MIR 103 232 -30 465 305 103 13 chr3 19042480 19042962 -208481616 + L1ME3A LINE L1 4971 5502 -668 483 277 30 56 chr3 19042994 19043153 -208481425 + L1ME3A LINE L1 5666 5813 -357 2246 106 0 3 chr3 19043153 19043465 -208481113 + AluSx SINE Alu 1 311 -1 483 277 30 56 chr3 19043465 19043617 -208480961 + L1ME3A LINE L1 5813 5967 -203 393 248 124 31 chr3 19043917 19044046 -208480532 - MIR3 SINE MIR -21 187 47 638 243 17 33 chr3 19044145 19044326 -208480252 + L2 LINE L2 3136 3313 0 555 207 76 35 chr3 19044447 19044592 -208479986 - MIR SINE MIR -78 184 34 240 288 0 0 chr3 19044842 19044908 -208479670 - MIR SINE MIR -61 147 82 259 207 17 35 chr3 19045315 19045373 -208479205 - L3 LINE CR1 -128 1449 1393 203 329 71 0 chr3 19045412 19045482 -208479096 - L2 LINE L2 -57 3215 3141 186 256 23 58 chr3 19045853 19045939 -208478639 + MIR SINE MIR 166 248 -14 189 0 0 0 chr3 19046901 19046922 -208477656 + (CAGGG)n Simple_repeat Simple_repeat 4 24 0 342 320 83 0 chr3 19047155 19047311 -208477267 + MIR3 SINE MIR 31 199 -9 22 70 0 0 chr3 19048972 19049015 -208475563 + GC_rich Low_complexity Low_complexity 1 43 0 45 104 0 0 chr3 19049043 19049207 -208475371 + GC_rich Low_complexity Low_complexity 1 164 0 23 33 0 0 chr3 19049248 19049278 -208475300 + GC_rich Low_complexity Low_complexity 1 30 0 248 279 0 0 chr3 19049662 19049730 -208474848 - MIR SINE MIR -116 146 79 308 217 123 9 chr3 19050226 19050332 -208474246 + MIR3 SINE MIR 5 122 -86 493 258 140 6 chr3 19050458 19050636 -208473942 - MIR SINE MIR -37 225 24 1618 159 70 4 chr3 19050923 19051194 -208473384 + AluJo SINE Alu 1 289 -23 298 286 7 88 chr3 19051356 19051503 -208473075 + MIR SINE MIR 74 208 -54 505 302 75 20 chr3 19051706 19052011 -208472567 + L1MC4a LINE L1 5255 5576 -2232 257 236 45 0 chr3 19052159 19052248 -208472330 + L1MC4a LINE L1 5833 5925 -1883 1203 132 15 0 chr3 19052520 19052724 -208471854 - MER7A DNA MER2_type -6 331 125 679 134 63 0 chr3 19052819 19052946 -208471632 - MER7A DNA MER2_type -212 134 2 415 197 63 175 chr3 19052991 19053094 -208471484 + L1MC4a LINE L1 5738 5804 -2004 1977 163 0 3 chr3 19053094 19053407 -208471171 + AluJb SINE Alu 1 312 0 415 197 63 175 chr3 19053407 19053526 -208471052 + L1MC4a LINE L1 5804 5935 -1873 542 260 8 8 chr3 19053531 19053654 -208470924 + FLAM_C SINE Alu 2 124 -9 24 0 0 0 chr3 19053654 19053678 -208470900 + AT_rich Low_complexity Low_complexity 1 24 0 295 319 58 51 chr3 19054084 19054268 -208470310 + MIR3 SINE MIR 4 187 -21 256 275 44 0 chr3 19054283 19054374 -208470204 + L3 LINE CR1 1375 1469 -108 198 379 33 13 chr3 19054839 19054992 -208469586 + L2 LINE L2 2632 2787 -527 335 245 77 43 chr3 19055125 19055333 -208469245 + L1MC/D LINE L1 5260 5474 -2334 249 341 127 8 chr3 19055522 19055648 -208468930 + L2 LINE L2 3098 3238 -34 392 327 62 19 chr3 19055807 19055969 -208468609 - MIR SINE MIR -4 258 90 2048 119 0 32 chr3 19055973 19056284 -208468294 - AluSx SINE Alu -8 304 4 187 333 81 20 chr3 19056310 19056409 -208468169 + MIR SINE MIR 39 143 -119 1494 179 11 37 chr3 19056725 19056803 -208467775 + L1MB7 LINE L1 4838 4917 -1229 2037 120 0 43 chr3 19056803 19057129 -208467449 + AluSx SINE Alu 1 312 0 1494 179 11 37 chr3 19057129 19057429 -208467149 + L1MB7 LINE L1 4917 5206 -940 870 205 0 0 chr3 19057439 19057595 -208466983 + FRAM SINE Alu 13 168 -8 3695 182 38 32 chr3 19057609 19058192 -208466386 + L1MB7 LINE L1 5232 5823 -361 729 125 62 23 chr3 19058192 19058320 -208466258 + FLAM_C SINE Alu 1 133 0 3695 182 38 32 chr3 19058320 19058672 -208465906 + L1MB7 LINE L1 5823 6171 -13 985 214 61 51 chr3 19058677 19059089 -208465489 + L1MC4 LINE L1 7624 8039 -3 252 269 185 9 chr3 19059316 19059424 -208465154 - L2 LINE L2 -2 3311 3185 489 246 25 0 chr3 19060637 19060759 -208463819 + MER3 DNA MER1_type 81 205 -4 316 258 178 19 chr3 19061139 19061352 -208463226 + MLT1K LTR MaLR 11 257 -292 252 158 18 0 chr3 19061631 19061688 -208462890 + MLT1H LTR MaLR 492 549 0 245 226 51 0 chr3 19062005 19062070 -208462508 - MIR SINE MIR -60 148 87 417 307 78 20 chr3 19062501 19062654 -208461924 + MIR SINE MIR 37 198 -64 198 302 0 0 chr3 19062972 19063025 -208461553 + MIR3 SINE MIR 142 194 -14 273 271 205 63 chr3 19063485 19063787 -208460791 + L2 LINE L2 2967 3311 -2 494 251 25 12 chr3 19063906 19064074 -208460504 - MIR SINE MIR -65 143 20 367 280 11 0 chr3 19064206 19064299 -208460279 - MIR SINE MIR -66 142 49 249 159 0 0 chr3 19064678 19064722 -208459856 + (TG)n Simple_repeat Simple_repeat 2 45 0 587 270 74 12 chr3 19064970 19065133 -208459445 + MIR SINE MIR 2 174 -88 682 252 93 18 chr3 19065256 19065482 -208459096 + MLT1K LTR MaLR 14 256 -332 473 256 122 45 chr3 19065511 19065757 -208458821 + MLT1K LTR MaLR 322 586 -2 25 31 0 0 chr3 19066343 19066375 -208458203 + AT_rich Low_complexity Low_complexity 1 32 0 417 278 119 20 chr3 19066384 19066600 -208457978 - MIR SINE MIR 0 262 24 297 278 43 108 chr3 19067336 19067613 -208456965 + L2 LINE L2 2985 3243 -29 212 256 0 0 chr3 19067637 19067680 -208456898 - L2 LINE L2 -16 3256 3214 731 254 45 9 chr3 19067685 19067905 -208456673 + MLT1K LTR MaLR 357 584 -4 182 294 47 24 chr3 19067907 19067992 -208456586 - MIR SINE MIR -137 125 39 2095 73 11 0 chr3 19067994 19068269 -208456309 - AluSx SINE Alu -5 307 30 604 287 58 22 chr3 19068634 19068857 -208455721 + L2 LINE L2 3083 3313 0 330 292 77 23 chr3 19069340 19069470 -208455108 - MIR SINE MIR -72 190 54 265 266 0 13 chr3 19070193 19070272 -208454306 + MIR SINE MIR 105 182 -80 296 284 191 38 chr3 19071367 19071764 -208452814 + L2 LINE L2 2592 3048 -265 1709 197 93 17 chr3 19071771 19072178 -208452400 - L1MB8 LINE L1 0 6178 5741 529 282 75 39 chr3 19072178 19072433 -208452145 + L2 LINE L2 3040 3303 -10 214 333 86 17 chr3 19072595 19072712 -208451866 + MIR SINE MIR 119 243 -19 211 356 107 13 chr3 19072871 19073020 -208451558 + L3 LINE CR1 1007 1169 -408 261 273 42 109 chr3 19073083 19073248 -208451330 + L3 LINE CR1 1299 1452 -125 251 260 29 58 chr3 19073863 19073967 -208450611 - MIR SINE MIR -149 113 13 293 320 25 16 chr3 19074110 19074232 -208450346 - MIR SINE MIR -117 145 23 1080 152 30 0 chr3 19075705 19075869 -208448709 - FAM SINE Alu -6 169 1 375 171 0 0 chr3 19075933 19076009 -208448569 + GA-rich Low_complexity Low_complexity 1 76 0 503 251 204 24 chr3 19076445 19076656 -208447922 - MIR SINE MIR -1 261 13 194 310 70 0 chr3 19076686 19076786 -208447792 - MIR SINE MIR -77 185 79 619 311 50 27 chr3 19077975 19078194 -208446384 - MIR SINE MIR -16 246 23 182 126 62 0 chr3 19078563 19078597 -208445981 - MIR SINE MIR -65 143 33 416 291 78 107 chr3 19078857 19079128 -208445450 - L3 LINE CR1 -23 1554 1292 975 234 6 0 chr3 19079226 19079540 -208445038 + (TCCA)n Simple_repeat Simple_repeat 1 316 0 996 121 11 6 chr3 19079601 19079775 -208444803 + (TCCA)n Simple_repeat Simple_repeat 4 178 0 280 359 29 0 chr3 19079891 19079994 -208444584 + MIR SINE MIR 86 191 -71 239 305 34 90 chr3 19080000 19080177 -208444401 + MIR SINE MIR 79 245 -17 359 282 169 16 chr3 19081058 19081377 -208443201 + LTR33 LTR ERVL 87 454 -67 197 154 0 26 chr3 19081436 19081475 -208443103 + L2 LINE L2 3008 3045 -227 225 0 0 0 chr3 19081898 19081923 -208442655 + (T)n Simple_repeat Simple_repeat 1 25 0 738 263 114 26 chr3 19082464 19082772 -208441806 - L2 LINE L2 -620 2694 2360 469 278 103 52 chr3 19082796 19082990 -208441588 - Charlie8 DNA MER1_type -2175 242 39 290 321 221 28 chr3 19083009 19083258 -208441320 + L2 LINE L2 2976 3272 0 232 284 54 14 chr3 19083266 19083340 -208441238 - MIR3 SINE MIR -43 165 89 327 341 22 7 chr3 19083819 19083954 -208440624 - MIR3 SINE MIR -49 159 23 * 375 252 45 65 chr3 19083916 19084071 -208440507 + MIR SINE MIR 42 193 -69 594 317 74 16 chr3 19084233 19084476 -208440102 - MIR SINE MIR -2 260 4 218 289 37 67 chr3 19084476 19084601 -208439977 - L3b LINE CR1 -188 1395 1275 274 243 14 14 chr3 19084700 19084770 -208439808 + (CGTG)n Simple_repeat Simple_repeat 2 71 0 728 219 0 0 chr3 19085000 19085128 -208439450 - FLAM_C SINE Alu -1 132 5 1755 158 10 10 chr3 19085137 19085428 -208439150 - AluSx SINE Alu -21 291 1 21 36 0 0 chr3 19085471 19085499 -208439079 + AT_rich Low_complexity Low_complexity 1 28 0 834 275 69 0 chr3 19085509 19085785 -208438793 + L1MC5 LINE L1 7302 7596 -365 736 225 84 0 chr3 19086010 19086188 -208438390 + MER113 DNA MER1_type? 117 309 -212 291 259 27 80 chr3 19086471 19086583 -208437995 - MIR SINE MIR -70 138 33 668 262 112 35 chr3 19086602 19086888 -208437690 - L2 LINE L2 -1 3312 3005 896 272 32 49 chr3 19086967 19087344 -208437234 - L1MD2 LINE L1 0 8042 6258 2367 40 0 4 chr3 19087614 19087892 -208436686 - AluY SINE Alu -14 297 21 25 31 0 0 chr3 19087893 19087925 -208436653 + AT_rich Low_complexity Low_complexity 1 32 0 466 170 85 0 chr3 19088090 19088196 -208436382 + MER96B DNA MER1_type? 303 417 0 900 156 75 0 chr3 19088318 19088491 -208436087 - MLT1B LTR MaLR 0 390 205 1139 258 136 18 chr3 19088493 19088537 -208436041 - MLT2B1 LTR ERVL -2 518 481 225 94 0 0 chr3 19088537 19088569 -208436009 + (TA)n Simple_repeat Simple_repeat 2 33 0 1139 258 136 18 chr3 19088569 19088981 -208435597 - MLT2B1 LTR ERVL -39 481 8 923 179 45 0 chr3 19088979 19089180 -208435398 - MLT1B LTR MaLR -180 210 1 * 1341 264 140 42 chr3 19090665 19091207 -208433371 + MLT1G1 LTR MaLR 1 595 0 595 229 83 13 chr3 19091307 19091464 -208433114 + MIR SINE MIR 84 251 -11 29 47 0 0 chr3 19091464 19091507 -208433071 + AT_rich Low_complexity Low_complexity 1 43 0 587 336 47 39 chr3 19092159 19092569 -208432009 + L1ME3A LINE L1 5473 5889 -281 2915 145 45 4 chr3 19092569 19093058 -208431520 + L1MB3 LINE L1 5672 6180 -3 587 336 47 39 chr3 19093058 19093135 -208431443 + L1ME3A LINE L1 5889 5964 -206 388 242 87 17 chr3 19093145 19093302 -208431276 + L1MC4 LINE L1 1977 6983 -1339 2309 108 24 19 chr3 19093309 19093727 -208430851 + L1MA1 LINE L1 5782 6201 -101 254 271 12 35 chr3 19093729 19093814 -208430764 + L1MC/D LINE L1 5495 5577 -767 704 110 0 0 chr3 19093831 19093931 -208430647 + L1MA1 LINE L1 6203 6302 0 421 340 45 13 chr3 19094883 19095039 -208429539 + MIR SINE MIR 23 183 -79 338 368 85 27 chr3 19095086 19095415 -208429163 + L2 LINE L2 2824 3171 -101 388 312 21 16 chr3 19095672 19095861 -208428717 + L2 LINE L2 2856 3045 -227 329 277 146 7 chr3 19096760 19096897 -208427681 - MIR3 SINE MIR -46 162 7 213 317 91 58 chr3 19098477 19098720 -208425858 + L2 LINE L2 2982 3232 -81 200 213 33 49 chr3 19098892 19098953 -208425625 - MIR SINE MIR -95 167 108 991 149 79 60 chr3 19099204 19099419 -208425159 + MER20B DNA MER1_type 1 219 0 193 320 31 41 chr3 19099458 19099555 -208425023 - MIR3 SINE MIR -26 182 87 208 322 11 56 chr3 19099907 19099997 -208424581 + MIR3 SINE MIR 13 98 -110 208 277 30 79 chr3 19099983 19100084 -208424494 + MIR SINE MIR 112 207 -55 374 255 301 52 chr3 19100106 19100455 -208424123 + L2 LINE L2 2871 3306 -7 195 311 198 0 chr3 19101508 19101614 -208422964 - L3 LINE CR1 -80 1497 1371 257 345 36 29 chr3 19102766 19102905 -208421673 - MIR3 SINE MIR -49 159 20 525 283 7 0 chr3 19103102 19103240 -208421338 + MIR SINE MIR 33 171 -91 216 378 12 0 chr3 19104479 19104561 -208420017 - MIR SINE MIR -71 191 109 208 264 0 28 chr3 19104583 19104655 -208419923 + L2 LINE L2 2966 3035 -237 186 240 0 0 chr3 19104689 19104739 -208419839 + CT-rich Low_complexity Low_complexity 2 51 0 272 208 56 0 chr3 19104758 19104830 -208419748 - MIR SINE MIR 0 262 187 808 219 145 26 chr3 19105584 19105812 -208418766 + MIR SINE MIR 8 262 0 279 313 0 12 chr3 19105931 19106059 -208418519 - MIR SINE MIR -59 203 79 634 268 49 32 chr3 19106394 19106640 -208417938 + L1ME3A LINE L1 5917 6166 -4 196 172 172 0 chr3 19106762 19106820 -208417758 + MIR SINE MIR 83 150 -58 243 293 37 12 chr3 19106823 19106905 -208417673 + MER5B DNA MER1_type 1 84 -94 2332 283 76 9 chr3 19106927 19107796 -208416782 - L1MD2 LINE L1 -7 6352 5426 336 349 18 0 chr3 19108203 19108312 -208416266 - L1MD2 LINE L1 -806 5436 5326 264 267 37 30 chr3 19108831 19108966 -208415612 - L1ME4a LINE L1 -7 6114 5979 293 243 27 14 chr3 19109856 19109930 -208414648 + MIR SINE MIR 81 155 -107 253 176 20 0 chr3 19110323 19110374 -208414204 + MIR3 SINE MIR 108 159 -49 338 226 86 0 chr3 19110466 19110559 -208414019 - MIR SINE MIR -47 215 115 419 212 62 18 chr3 19111486 19111599 -208412979 - MIR SINE MIR -70 192 75 220 278 15 105 chr3 19111529 19111662 -208412916 + L2 LINE L2 1391 1511 -1803 * 202 333 28 9 chr3 19112626 19112734 -208411844 - MIR SINE MIR -89 119 9 2187 114 0 0 chr3 19113011 19113317 -208411261 + AluSx SINE Alu 1 306 -6 376 327 9 0 chr3 19113456 19113566 -208411012 - MIR SINE MIR -79 183 73 1588 175 31 7 chr3 19114500 19114792 -208409786 + AluJo SINE Alu 7 305 -7 216 343 57 0 chr3 19114883 19114953 -208409625 - L2 LINE L2 -70 3202 3129 345 378 52 12 chr3 19115060 19115232 -208409346 - MIR SINE MIR -16 246 68 377 248 28 21 chr3 19116842 19116987 -208407591 + MLT1K LTR MaLR 87 232 -356 234 0 0 0 chr3 19117217 19117243 -208407335 + (TTCCC)n Simple_repeat Simple_repeat 1 26 0 421 290 57 0 chr3 19117360 19117484 -208407094 - MIR SINE MIR -64 198 68 820 226 39 81 chr3 19118966 19119298 -208405280 - L1MD2 LINE L1 -1 6358 6041 840 318 88 12 chr3 19119326 19119816 -208404762 - MER20B DNA MER1_type -50 733 207 3286 187 32 6 chr3 19120529 19121239 -208403339 + L1MB3 LINE L1 5414 6142 -41 233 231 0 0 chr3 19121233 19121285 -208403293 + L1M2 LINE L1 5773 5824 -488 * 240 308 42 49 chr3 19121776 19121919 -208402659 + L2 LINE L2 3172 3313 0 362 263 30 0 chr3 19122037 19122136 -208402442 - MIR SINE MIR -66 142 41 513 269 61 9 chr3 19123632 19123844 -208400734 + L2 LINE L2 2836 3058 -214 432 235 45 30 chr3 19125262 19125394 -208399184 + MIR SINE MIR 79 212 -50 422 259 43 0 chr3 19126054 19126170 -208398408 + MER5B DNA MER1_type 10 130 -48 292 256 37 12 chr3 19126274 19126356 -208398222 + MIR SINE MIR 106 189 -73 27 0 0 0 chr3 19128602 19128629 -208395949 + GC_rich Low_complexity Low_complexity 1 27 0 254 368 56 0 chr3 19128761 19128905 -208395673 + MIR SINE MIR 22 173 -89 352 296 176 39 chr3 19129062 19129397 -208395181 - L2 LINE L2 -91 3222 2842 186 226 75 0 chr3 19129475 19129528 -208395050 + MIR SINE MIR 119 175 -87 400 246 232 7 chr3 19129551 19129693 -208394885 - MIR SINE MIR -76 186 13 461 262 41 0 chr3 19129846 19129968 -208394610 - MIR3 SINE MIR -45 163 37 209 316 173 42 chr3 19130274 19130442 -208394136 - MIR SINE MIR -70 192 3 205 229 98 0 chr3 19130442 19130502 -208394076 - MIR3 SINE MIR -41 167 102 226 257 27 0 chr3 19131902 19131976 -208392602 - L1ME4a LINE L1 -106 6015 5940 995 138 88 0 chr3 19132047 19132206 -208392372 - FAM SINE Alu -1 174 2 268 340 20 0 chr3 19132448 19132548 -208392030 - L1ME4a LINE L1 -223 5947 5846 372 357 21 0 chr3 19134949 19135092 -208389486 - L2 LINE L2 -213 3059 2914 223 378 67 0 chr3 19135110 19135364 -208389214 - L2 LINE L2 -524 2790 2520 502 259 108 67 chr3 19135896 19136280 -208388298 + L1ME4a LINE L1 5654 6058 -63 1594 220 0 0 chr3 19136280 19136585 -208387993 - AluJo SINE Alu -7 305 1 502 259 108 67 chr3 19136585 19136617 -208387961 + L1ME4a LINE L1 6058 6087 -34 413 350 51 0 chr3 19136743 19136960 -208387618 + MIR SINE MIR 21 248 -14 210 286 83 12 chr3 19137029 19137113 -208387465 + MER91C DNA MER1_type 21 110 -30 302 285 248 7 chr3 19137147 19137284 -208387294 + MIR SINE MIR 58 227 -35 528 340 130 20 chr3 19137651 19138207 -208386371 + L2 LINE L2 2637 3272 0 505 228 41 28 chr3 19138368 19138513 -208386065 + MIR3 SINE MIR 3 149 -59 271 306 45 36 chr3 19138679 19138790 -208385788 + MIR SINE MIR 122 233 -29 * 323 339 45 0 chr3 19138788 19138900 -208385678 + L2 LINE L2 3193 3309 -4 548 241 85 0 chr3 19139425 19139566 -208385012 - L2 LINE L2 -1 3271 3119 351 383 158 8 chr3 19139732 19140098 -208384480 + L3 LINE CR1 931 1351 -226 395 288 25 0 chr3 19140147 19140265 -208384313 - MIR SINE MIR -80 182 62 257 309 200 36 chr3 19140268 19140488 -208384090 + L3 LINE CR1 1312 1567 -10 291 293 80 17 chr3 19141103 19141251 -208383327 + MIR SINE MIR 3 156 -52 665 315 156 8 chr3 19141636 19142020 -208382558 + L2 LINE L2 2873 3313 0 291 164 73 0 chr3 19142434 19142489 -208382089 + MIR SINE MIR 95 153 -55 311 243 103 0 chr3 19142572 19142679 -208381899 + MER113 DNA MER1_type? 67 184 -337 1581 206 88 29 chr3 19142679 19143053 -208381525 - MSTD LTR MaLR 0 396 1 534 271 118 50 chr3 19143457 19143840 -208380738 + L2 LINE L2 2555 2963 -351 187 320 51 0 chr3 19143863 19143941 -208380637 + L2 LINE L2 1849 1930 -1384 1743 182 10 75 chr3 19144204 19144314 -208380264 + L1MB7 LINE L1 5719 5835 -349 1733 148 14 31 chr3 19144314 19144604 -208379974 + AluJb SINE Alu 5 289 -23 1743 182 10 75 chr3 19144604 19144946 -208379632 + L1MB7 LINE L1 5835 6141 -43 2388 65 0 10 chr3 19144946 19145256 -208379322 + AluY SINE Alu 1 307 -4 1743 182 10 75 chr3 19145256 19145281 -208379297 + L1MB7 LINE L1 6141 6166 -18 299 326 90 14 chr3 19145282 19145426 -208379152 + L2 LINE L2 3159 3313 0 218 303 15 0 chr3 19145708 19145774 -208378804 - L2 LINE L2 -5 3267 3201 591 332 60 7 chr3 19146118 19146416 -208378162 + L2 LINE L2 2998 3311 -2 222 250 0 0 chr3 19147600 19147648 -208376930 - L2 LINE L2 -267 3046 2999 409 295 70 0 chr3 19147783 19147983 -208376595 + L2 LINE L2 2812 3025 -288 185 309 157 31 chr3 19148295 19148486 -208376092 - L3 LINE CR1 -16 1561 1347 1007 246 70 56 chr3 19148789 19149146 -208375432 + MLT1K LTR MaLR 83 444 -144 342 296 143 42 chr3 19149583 19149772 -208374806 - MIR SINE MIR -33 229 22 552 214 44 38 chr3 19150266 19150425 -208374153 + MER5A DNA MER1_type 12 171 -18 328 306 58 8 chr3 19151189 19151310 -208373268 - L2 LINE L2 -2 3311 3185 231 214 0 0 chr3 19151370 19151412 -208373166 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 272 327 59 39 chr3 19151537 19151690 -208372888 - L2 LINE L2 -262 3051 2896 491 307 78 43 chr3 19151812 19151865 -208372713 - MIR SINE MIR -4 258 208 2610 49 0 0 chr3 19151865 19152173 -208372405 - AluY SINE Alu -3 308 1 491 307 78 43 chr3 19152173 19152350 -208372228 - MIR SINE MIR -54 208 20 400 340 39 0 chr3 19153156 19153309 -208371269 - L2 LINE L2 -1 3312 3154 311 214 22 0 chr3 19153571 19153660 -208370918 - L2 LINE L2 -303 3010 2920 1219 211 37 9 chr3 19153660 19153983 -208370595 + L1MB7 LINE L1 5844 6175 -9 248 280 248 0 chr3 19153985 19154110 -208370468 - L2 LINE L2 -148 3165 3010 392 256 20 28 chr3 19154858 19155062 -208369516 - L2 LINE L2 -351 2962 2688 588 77 0 3 chr3 19155063 19155312 -208369266 + AluY SINE Alu 1 312 0 424 285 95 14 chr3 19155523 19155744 -208368834 - L2 LINE L2 -918 2396 2158 1636 161 4 18 chr3 19155895 19156189 -208368389 + AluJo SINE Alu 15 304 0 181 319 69 26 chr3 19156327 19156443 -208368135 + MIR SINE MIR 72 192 -70 314 289 10 21 chr3 19156653 19156750 -208367828 + L2 LINE L2 3179 3274 -39 326 309 134 7 chr3 19156754 19156903 -208367675 - MIR SINE MIR -60 202 35 361 211 167 0 chr3 19157665 19157755 -208366823 + L2 LINE L2 3162 3266 -6 913 245 5 0 chr3 19157795 19157983 -208366595 - MIR SINE MIR -60 202 14 205 245 306 0 chr3 19158003 19158101 -208366477 + L2 LINE L2 3145 3272 0 454 302 33 33 chr3 19158794 19158976 -208365602 - Charlie8 DNA MER1_type -2235 182 1 327 274 12 0 chr3 19159569 19159653 -208364925 + MLT1J LTR MaLR 73 157 -354 1368 207 95 108 chr3 19159790 19160496 -208364082 - L1MC4 LINE L1 -1115 6927 6227 1730 115 30 54 chr3 19160496 19160630 -208363948 + AluSx SINE Alu 5 141 -171 2489 43 0 7 chr3 19160630 19160935 -208363643 + AluY SINE Alu 1 303 -8 1730 115 30 54 chr3 19160935 19161096 -208363482 + AluSx SINE Alu 141 293 -19 1368 207 95 108 chr3 19161096 19161205 -208363373 - L1MC4 LINE L1 -1815 6227 6118 929 120 0 8 chr3 19161207 19161332 -208363246 + FLAM_C SINE Alu 1 124 -9 754 0 0 0 chr3 19161342 19161427 -208363151 + L1PA6 LINE L1 6064 6148 -6 1571 184 139 17 chr3 19161449 19161802 -208362776 - MSTD LTR MaLR 0 396 1 2195 109 3 0 chr3 19161812 19162116 -208362462 + AluSx SINE Alu 3 307 -5 216 259 17 0 chr3 19162152 19162210 -208362368 + MIR SINE MIR 80 138 -124 * 259 288 0 12 chr3 19162208 19162288 -208362290 - MIR SINE MIR 0 262 184 352 241 200 14 chr3 19162334 19162479 -208362099 - MIR SINE MIR -72 190 19 585 296 39 17 chr3 19162907 19163137 -208361441 + MIR SINE MIR 21 255 -7 286 172 250 0 chr3 19163271 19163335 -208361243 + Tigger5 DNA MER2_type 1 80 -2243 277 254 0 0 chr3 19163370 19163425 -208361153 + Tigger5 DNA MER2_type 2269 2323 0 1646 125 68 8 chr3 19163609 19163873 -208360705 - AluJb SINE Alu -10 302 23 327 228 16 102 chr3 19163882 19164009 -208360569 + MIR SINE MIR 39 154 -108 2313 88 0 7 chr3 19164009 19164316 -208360262 - AluSx SINE Alu -7 305 1 381 83 0 273 chr3 19164316 19164380 -208360198 + MER45 DNA AcHobo 1486 1566 -15 912 125 0 22 chr3 19164380 19164516 -208360062 - FLAM_C SINE Alu 0 133 1 381 83 0 273 chr3 19164516 19164528 -208360050 + MER45 DNA AcHobo 1566 1515 -66 2300 89 0 7 chr3 19164528 19164830 -208359748 - AluSg SINE Alu -10 300 1 381 83 0 273 chr3 19164830 19164884 -208359694 + MER45 DNA AcHobo 1514 1581 0 623 256 168 3 chr3 19165082 19165395 -208359183 - MLT1G1 LTR MaLR -254 336 1 813 193 0 7 chr3 19165516 19165651 -208358927 + AluJo SINE Alu 2 135 -177 288 194 0 45 chr3 19165913 19165980 -208358598 + MER4D LTR ERV1 1 64 -808 1552 145 139 3 chr3 19165984 19166287 -208358291 + MER4E LTR ERV1 415 758 -8 190 220 77 5 chr3 19167868 19167977 -208356601 + MIR SINE MIR 86 248 -14 226 324 14 0 chr3 19169256 19169330 -208355248 - MIR SINE MIR -78 184 110 845 147 0 0 chr3 19169377 19169506 -208355072 - FLAM_A SINE Alu -6 136 8 543 175 0 35 chr3 19169520 19169634 -208354944 - AluJb SINE Alu 0 312 203 1898 161 7 0 chr3 19169702 19170012 -208354566 + AluJo SINE Alu 1 312 0 2654 174 40 4 chr3 19170012 19170513 -208354065 + L1MB4 LINE L1 5656 6174 -6 234 305 181 0 chr3 19170553 19170658 -208353920 + MLT1K LTR MaLR 110 233 -355 451 254 66 19 chr3 19170784 19170988 -208353590 + MLT1H LTR MaLR 13 233 -316 2211 91 30 0 chr3 19171701 19171999 -208352579 + AluSx SINE Alu 1 307 -5 2097 129 0 10 chr3 19172494 19172805 -208351773 + AluSx SINE Alu 1 308 -4 239 253 115 0 chr3 19173732 19173819 -208350759 - HAL1 LINE L1 -1047 1460 1364 2115 97 0 52 chr3 19174164 19174493 -208350085 + AluSx SINE Alu 1 312 0 705 254 23 9 chr3 19174997 19175214 -208349364 - L1MC5 LINE L1 -36 7925 7706 418 165 0 33 chr3 19176217 19176308 -208348270 - AluJ/FRAM SINE Alu -9 303 216 204 333 58 0 chr3 19176725 19176812 -208347766 + L2 LINE L2 3147 3238 -34 362 327 62 19 chr3 19176971 19177133 -208347445 - MIR SINE MIR -4 258 90 2226 75 0 13 chr3 19177137 19177444 -208347134 - AluY SINE Alu -8 303 1 2178 208 32 11 chr3 19177444 19177968 -208346610 - L1MB3 LINE L1 -41 6142 5608 1103 86 37 113 chr3 19178644 19178970 -208345608 - AluSx SINE Alu -1 301 1 1402 105 18 5 chr3 19178972 19179191 -208345387 - L1P5 LINE L1 -467 5687 5466 235 274 27 0 chr3 19179191 19179264 -208345314 + MIR SINE MIR 91 165 -97 208 266 147 0 chr3 19180240 19180349 -208344229 - MIR SINE MIR -83 179 55 300 327 92 33 chr3 19181296 19181449 -208343129 + L3 LINE CR1 1407 1568 -9 290 308 0 0 chr3 19183158 19183249 -208341329 + MIR SINE MIR 80 170 -92 334 266 101 69 chr3 19183615 19183803 -208340775 - MLT1J LTR MaLR -295 216 23 2136 92 0 3 chr3 19184222 19184516 -208340062 + AluSg SINE Alu 1 293 -17 274 146 0 0 chr3 19184516 19184557 -208340021 - AluJo/FLAM SINE Alu -180 122 82 1076 197 5 23 chr3 19184559 19184777 -208339801 - AluJo SINE Alu -98 214 1 313 313 52 37 chr3 19184895 19185062 -208339516 + MIR SINE MIR 18 189 -60 309 193 0 36 chr3 19185566 19185649 -208338929 + L1PB3 LINE L1 6069 6148 -6 189 211 96 0 chr3 19185747 19185799 -208338779 - MIR SINE MIR -88 174 118 1930 119 20 14 chr3 19185975 19186269 -208338309 - AluSx SINE Alu -16 296 1 293 205 39 0 chr3 19186269 19186347 -208338231 - L1M4 LINE L1 -1228 4918 4838 1593 168 3 18 chr3 19186790 19187095 -208337483 + AluJb SINE Alu 4 304 0 232 333 0 53 chr3 19187547 19187661 -208336917 + L2 LINE L2 3126 3233 -39 300 287 139 8 chr3 19187665 19187787 -208336791 - MIR SINE MIR -60 202 65 412 143 71 10 chr3 19188181 19188279 -208336299 - L1MA1 LINE L1 -417 5885 5782 373 297 34 42 chr3 19188286 19188404 -208336174 - L1MC4 LINE L1 -1339 6703 6587 650 333 49 45 chr3 19188455 19188534 -208336044 - L1ME3A LINE L1 -206 5964 5887 2819 153 43 6 chr3 19188534 19189025 -208335553 - L1MB3 LINE L1 -3 6180 5672 650 333 49 45 chr3 19189025 19189435 -208335143 - L1ME3A LINE L1 -283 5887 5473 583 228 82 19 chr3 19190136 19190294 -208334284 - MIR SINE MIR -11 251 84 1289 264 140 42 chr3 19190395 19190937 -208333641 - MLT1G1 LTR MaLR 0 595 1 185 317 0 61 chr3 19191979 19192061 -208332517 - L2 LINE L2 -2901 413 337 1859 171 96 10 chr3 19192456 19192841 -208331737 + MSTA LTR MaLR 11 428 0 2242 87 10 0 chr3 19192860 19193160 -208331418 - AluSx SINE Alu -9 303 1 387 224 21 18 chr3 19193161 19193319 -208331259 - L1ME LINE L1 -343 5821 5666 494 311 70 14 chr3 19193356 19193776 -208330802 - L1ME LINE L1 -673 5497 5056 461 316 136 27 chr3 19195154 19195565 -208329013 + L2 LINE L2 2817 3272 0 484 228 41 28 chr3 19195726 19195871 -208328707 + MIR3 SINE MIR 3 149 -59 246 306 45 36 chr3 19196037 19196148 -208328430 + MIR SINE MIR 122 233 -29 * 276 348 45 0 chr3 19196146 19196258 -208328320 + L2 LINE L2 3193 3309 -4 577 241 62 7 chr3 19196783 19196928 -208327650 - L2 LINE L2 -1 3271 3119 297 379 71 0 chr3 19197133 19197315 -208327263 + L3 LINE CR1 981 1175 -402 380 288 25 0 chr3 19197509 19197627 -208326951 - MIR SINE MIR -80 182 62 232 303 134 42 chr3 19197708 19197850 -208326728 + L3 LINE CR1 1413 1567 -10 275 278 87 17 chr3 19198489 19198604 -208325974 + MIR SINE MIR 24 146 -116 594 299 164 16 chr3 19198998 19199382 -208325196 + L2 LINE L2 2873 3313 0 286 164 73 0 chr3 19199796 19199851 -208324727 + MIR SINE MIR 95 153 -55 325 243 103 0 chr3 19199934 19200041 -208324537 + MER113 DNA MER1_type? 67 184 -337 1524 206 88 29 chr3 19200041 19200415 -208324163 - MSTD LTR MaLR 0 396 1 467 271 118 50 chr3 19200819 19201202 -208323376 + L2 LINE L2 2555 2963 -351 1872 186 12 75 chr3 19201535 19201676 -208322902 + L1MB7 LINE L1 5698 5846 -338 1701 148 14 31 chr3 19201676 19201966 -208322612 + AluJb SINE Alu 5 289 -23 1872 186 12 75 chr3 19201966 19202308 -208322270 + L1MB7 LINE L1 5846 6141 -43 2364 65 0 10 chr3 19202308 19202618 -208321960 + AluY SINE Alu 1 307 -4 1872 186 12 75 chr3 19202618 19202643 -208321935 + L1MB7 LINE L1 6141 6166 -18 295 326 90 14 chr3 19202644 19202788 -208321790 + L2 LINE L2 3159 3313 0 196 235 20 0 chr3 19203085 19203136 -208321442 - L2 LINE L2 -20 3252 3201 500 336 60 7 chr3 19203480 19203778 -208320800 + L2 LINE L2 2998 3311 -2 182 292 0 0 chr3 19204962 19205010 -208319568 - L2 LINE L2 -267 3046 2999 393 285 70 0 chr3 19205145 19205345 -208319233 + L2 LINE L2 2812 3025 -288 1120 239 83 52 chr3 19206123 19206508 -208318070 + MLT1K LTR MaLR 48 444 -144 302 289 33 53 chr3 19206982 19207134 -208317444 - MIR SINE MIR -92 170 22 517 220 44 38 chr3 19207628 19207787 -208316791 + MER5A DNA MER1_type 12 171 -18 301 306 58 8 chr3 19208551 19208672 -208315906 - L2 LINE L2 -2 3311 3185 231 214 0 0 chr3 19208732 19208774 -208315804 + (TTCA)n Simple_repeat Simple_repeat 1 42 0 254 314 59 39 chr3 19208899 19209052 -208315526 - L2 LINE L2 -262 3051 2896 416 303 78 43 chr3 19209174 19209227 -208315351 - MIR SINE MIR -4 258 208 2723 49 0 0 chr3 19209227 19209534 -208315044 - AluY SINE Alu -4 307 1 416 303 78 43 chr3 19209534 19209711 -208314867 - MIR SINE MIR -54 208 20 387 366 75 30 chr3 19210517 19210785 -208313793 - L2 LINE L2 -1 3271 2992 297 214 22 0 chr3 19210932 19211021 -208313557 - L2 LINE L2 -303 3010 2920 1311 211 37 9 chr3 19211021 19211344 -208313234 + L1MB7 LINE L1 5844 6175 -9 193 290 250 0 chr3 19211347 19211471 -208313107 - L2 LINE L2 -149 3164 3010 437 212 109 30 chr3 19212214 19212515 -208312063 - L2 LINE L2 -345 2968 2624 307 254 45 27 chr3 19212666 19212776 -208311802 + L2 LINE L2 2910 3021 -251 356 309 89 11 chr3 19213282 19213573 -208311005 - L2 LINE L2 -253 3060 2688 490 78 4 3 chr3 19213574 19213807 -208310771 + AluY SINE Alu 1 297 -15 370 261 75 12 chr3 19214011 19214172 -208310406 - L2 LINE L2 -918 2396 2226 1722 157 4 18 chr3 19214383 19214677 -208309901 + AluJo SINE Alu 15 304 0 276 291 12 0 chr3 19215152 19215238 -208309340 + L2 LINE L2 3188 3274 -39 284 287 139 8 chr3 19215242 19215364 -208309214 - MIR SINE MIR -60 202 65 340 211 167 0 chr3 19216153 19216243 -208308335 + L2 LINE L2 3162 3266 -6 896 245 5 0 chr3 19216283 19216471 -208308107 - MIR SINE MIR -60 202 14 191 245 306 0 chr3 19216491 19216589 -208307989 + L2 LINE L2 3145 3272 0 438 302 33 33 chr3 19217282 19217464 -208307114 - Charlie8 DNA MER1_type -2235 182 1 416 252 10 0 chr3 19218057 19218160 -208306418 + MLT1J LTR MaLR 73 176 -335 305 202 26 75 chr3 19218403 19218523 -208306055 + MLT1J2 LTR MaLR 259 434 -77 533 260 215 10 chr3 19218794 19218994 -208305584 - MIR SINE MIR -20 242 2 549 245 146 26 chr3 19219755 19219947 -208304631 - MIR SINE MIR -14 248 34 298 313 35 14 chr3 19220735 19220879 -208303699 - L1ME LINE L1 -461 5660 5514 1584 177 95 28 chr3 19221848 19222238 -208302340 + MSTA LTR MaLR 13 428 0 1463 86 11 0 chr3 19222257 19222443 -208302135 - AluSg/x SINE Alu -9 301 114 1679 168 102 14 chr3 19222561 19222913 -208301665 + MSTA LTR MaLR 46 428 0 2335 93 10 0 chr3 19222932 19223232 -208301346 - AluSx SINE Alu -9 303 1 211 265 24 36 chr3 19223232 19223315 -208301263 + MIR SINE MIR 181 262 0 2308 89 0 0 chr3 19223359 19223640 -208300938 + AluSc SINE Alu 1 281 -28 1662 186 26 45 chr3 19224604 19224985 -208299593 + MLT1A2 LTR MaLR 1 374 0 220 266 169 0 chr3 19225035 19225212 -208299366 + L2 LINE L2 2851 3057 -215 186 167 93 0 chr3 19225355 19225409 -208299169 + MIR SINE MIR 56 114 -94 254 276 20 10 chr3 19226164 19226262 -208298316 - MIR SINE MIR -124 138 40 457 283 61 0 chr3 19226382 19226562 -208298016 + MIR SINE MIR 47 237 -25 326 318 61 41 chr3 19227309 19227554 -208297024 + L1MC4 LINE L1 7793 8042 0 2168 132 0 3 chr3 19227561 19227864 -208296714 + AluSx SINE Alu 2 303 -9 698 209 26 13 chr3 19229321 19229474 -208295104 - MER58A DNA MER1_type -27 197 43 877 179 5 47 chr3 19229477 19229667 -208294911 + L1MB3 LINE L1 4810 4991 -1155 1142 100 13 7 chr3 19229669 19229819 -208294759 + AluSq/x SINE Alu 1 151 -162 189 0 0 0 chr3 19229842 19229863 -208294715 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 1685 200 44 61 chr3 19229874 19230355 -208294223 + L1MB3 LINE L1 4980 5468 -703 2319 64 51 3 chr3 19230355 19230650 -208293928 + AluSc SINE Alu 1 309 0 2171 128 0 0 chr3 19230655 19230951 -208293627 + AluSg SINE Alu 1 296 -14 1685 200 44 61 chr3 19230951 19231082 -208293496 + L1MB3 LINE L1 5472 5580 -591 969 164 48 0 chr3 19231108 19231297 -208293281 + L1MA5A LINE L1 6096 6293 -4 2858 167 27 20 chr3 19231311 19231844 -208292734 + L1MB3 LINE L1 5594 6133 -50 2218 106 3 7 chr3 19231844 19232136 -208292442 + AluSc SINE Alu 1 291 -18 2858 167 27 20 chr3 19232136 19232188 -208292390 + L1MB3 LINE L1 6133 6183 0 23 54 0 0 chr3 19232237 19232274 -208292304 + AT_rich Low_complexity Low_complexity 1 37 0 390 206 56 63 chr3 19232277 19232403 -208292175 - MER69 DNA AcHobo -2401 125 1 271 203 0 17 chr3 19232668 19232727 -208291851 - MER58A DNA MER1_type -164 60 3 277 242 15 0 chr3 19233301 19233367 -208291211 - MIR SINE MIR -79 183 117 193 291 25 0 chr3 19233480 19233559 -208291019 + MIR SINE MIR 58 138 -124 555 144 21 0 chr3 19234253 19234350 -208290228 + MER58A DNA MER1_type 126 224 0 180 111 0 0 chr3 19234500 19234527 -208290051 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 315 300 111 12 chr3 19235080 19235509 -208289069 - L2 LINE L2 -96 3217 2681 220 167 28 28 chr3 19235510 19235582 -208288996 + GA-rich Low_complexity Low_complexity 4 75 0 283 311 19 9 chr3 19235744 19235850 -208288728 - MIR SINE MIR -107 155 49 203 241 81 0 chr3 19236734 19236821 -208287757 - MIR SINE MIR -79 129 35 670 203 0 0 chr3 19236931 19237049 -208287529 + MER58A DNA MER1_type 1 118 0 202 252 96 61 chr3 19237410 19237525 -208287053 + MIR3 SINE MIR 87 205 -3 458 322 192 1 chr3 19237942 19238380 -208286198 + L2 LINE L2 2537 3060 -253 363 283 53 59 chr3 19238579 19238766 -208285812 + MIR SINE MIR 2 187 -75 180 0 0 0 chr3 19239083 19239103 -208285475 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2196 239 55 39 chr3 19239105 19240176 -208284402 - L1MB7 LINE L1 -9 6175 5122 2356 82 0 3 chr3 19240176 19240499 -208284079 + AluSq SINE Alu 1 322 0 2196 239 55 39 chr3 19240499 19241629 -208282949 - L1MB7 LINE L1 -1062 5122 3708 2407 69 0 41 chr3 19241629 19241946 -208282632 + AluSg SINE Alu 1 304 -6 2196 239 55 39 chr3 19241946 19242696 -208281882 - L1MB7 LINE L1 -2476 3708 2971 1689 148 0 29 chr3 19242700 19243010 -208281568 - AluY SINE Alu -10 301 1 914 219 108 8 chr3 19244394 19244654 -208279924 + L1M4 LINE L1 3840 4125 -2021 963 126 0 0 chr3 19244657 19244800 -208279778 - AluSg/x SINE Alu -3 309 167 863 245 93 41 chr3 19244804 19245245 -208279333 + L1M4 LINE L1 4130 4593 -1553 1984 167 11 30 chr3 19245251 19245617 -208278961 + MLT1A1 LTR MaLR 7 365 0 475 284 9 27 chr3 19246055 19246277 -208278301 + L1 LINE L1 3946 4163 -1983 328 319 81 29 chr3 19246493 19246766 -208277812 - L2 LINE L2 -194 3119 2833 305 243 27 0 chr3 19246785 19246859 -208277719 - MIR SINE MIR -108 154 79 349 253 0 11 chr3 19247285 19247376 -208277202 + L1MEd LINE L1 960 1049 -5070 848 252 156 3 chr3 19248193 19248495 -208276083 + MLT1F1 LTR MaLR 103 450 -117 1628 214 74 5 chr3 19249032 19249439 -208275139 + L1MB7 LINE L1 5741 6175 -9 32 67 0 0 chr3 19249849 19249909 -208274669 + AT_rich Low_complexity Low_complexity 1 60 0 183 139 0 0 chr3 19250127 19250163 -208274415 + (TATATG)n Simple_repeat Simple_repeat 3 38 0 401 273 24 8 chr3 19250168 19250294 -208274284 - L1MC4 LINE L1 -1339 6703 6614 399 314 0 19 chr3 19250202 19250307 -208274271 + L1MC4 LINE L1 6614 6716 -1326 * 325 277 87 95 chr3 19250579 19250832 -208273746 - L1 LINE L1 -2814 4034 1655 225 0 0 0 chr3 19251443 19251468 -208273110 + (TA)n Simple_repeat Simple_repeat 2 26 0 1115 203 4 35 chr3 19251468 19251700 -208272878 - AluJo SINE Alu -17 295 71 564 278 137 43 chr3 19254742 19255181 -208269397 - MLT1J LTR MaLR -9 502 23 2310 121 0 0 chr3 19255599 19255912 -208268666 + AluSq SINE Alu 1 313 0 466 295 70 16 chr3 19256082 19256340 -208268238 + L1ME4a LINE L1 5566 5837 -284 402 293 24 69 chr3 19256372 19256504 -208268074 + L2 LINE L2 2334 2451 -863 2332 90 3 7 chr3 19256504 19256823 -208267755 + AluSx SINE Alu 1 312 0 402 293 24 69 chr3 19256823 19256936 -208267642 + L2 LINE L2 2451 2568 -746 218 149 40 27 chr3 19256967 19257041 -208267537 + CT-rich Low_complexity Low_complexity 1 75 0 342 0 0 0 chr3 19258355 19258393 -208266185 + (TA)n Simple_repeat Simple_repeat 2 39 0 3959 228 35 44 chr3 19258393 19259859 -208264719 + L1M4 LINE L1 2485 3945 -2201 2137 126 0 41 chr3 19259859 19260177 -208264401 + AluSx SINE Alu 7 311 -1 3959 228 35 44 chr3 19260177 19260394 -208264184 + L1M4 LINE L1 3945 4163 -1983 346 313 85 31 chr3 19260623 19260882 -208263696 - L2 LINE L2 -208 3105 2833 306 260 36 12 chr3 19260861 19260975 -208263603 - MIR SINE MIR -13 195 79 * 425 234 19 9 chr3 19261401 19261508 -208263070 + L1MEd LINE L1 960 1067 -5052 212 387 75 0 chr3 19261823 19261916 -208262662 + L2 LINE L2 3170 3269 -3 202 296 22 74 chr3 19261907 19262042 -208262536 - MIR SINE MIR -128 134 7 * 1868 133 0 0 chr3 19262620 19262891 -208261687 + AluSx SINE Alu 25 295 -17 406 248 7 97 chr3 19263019 19263065 -208261513 + MER5A DNA MER1_type 32 81 -108 2035 125 7 0 chr3 19263065 19263353 -208261225 + AluSq SINE Alu 1 290 -23 406 248 7 97 chr3 19263353 19263451 -208261127 + MER5A DNA MER1_type 81 163 -26 227 340 21 64 chr3 19263475 19263616 -208260962 + MIR SINE MIR 58 192 -70 806 150 0 29 chr3 19264236 19264376 -208260202 - AluJb SINE Alu -176 136 1 297 277 78 21 chr3 19266518 19266659 -208257919 - L1MC4a LINE L1 -1815 5993 5845 306 73 0 0 chr3 19268405 19268446 -208256132 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 402 39 0 0 chr3 19269453 19269505 -208255073 + (TG)n Simple_repeat Simple_repeat 2 53 0 713 210 193 8 chr3 19269523 19269766 -208254812 + MLT1F LTR MaLR 185 472 -70 1019 248 33 4 chr3 19269817 19270059 -208254519 + LTR42 LTR ERVL 247 495 0 283 291 23 12 chr3 19270059 19270137 -208254441 + MLT1F LTR MaLR 489 567 0 252 356 74 7 chr3 19270184 19270333 -208254245 + L2 LINE L2 3130 3288 -25 433 293 24 43 chr3 19270369 19270533 -208254045 + MIR SINE MIR 23 183 -79 223 244 11 11 chr3 19270923 19271013 -208253565 + (TG)n Simple_repeat Simple_repeat 1 90 0 525 292 188 48 chr3 19271126 19271503 -208253075 - LTR16C LTR ERVL 0 491 62 286 267 160 15 chr3 19272005 19272136 -208252442 + LTR67 LTR ERVL 408 557 0 315 283 169 5 chr3 19272182 19272366 -208252212 - L1ME4a LINE L1 -52 6069 5856 694 324 82 27 chr3 19272411 19272927 -208251651 + L2 LINE L2 2713 3249 -64 227 139 0 0 chr3 19272964 19273000 -208251578 + L1M4 LINE L1 4963 4998 -1148 2318 99 78 20 chr3 19273001 19273345 -208251233 + THE1B LTR MaLR 1 364 0 8804 79 15 1 chr3 19273345 19274515 -208250063 + THE1B-int LTR MaLR 1 1187 -393 2245 82 6 29 chr3 19274734 19275049 -208249529 + AluSg SINE Alu 2 309 -1 822 227 184 3 chr3 19275052 19275334 -208249244 - L1MEc LINE L1 -3267 2948 2616 1359 137 116 65 chr3 19275345 19275622 -208248956 + AluJb SINE Alu 13 303 -9 956 77 0 26 chr3 19275628 19275784 -208248794 + (GGAA)n Simple_repeat Simple_repeat 3 154 0 740 215 98 55 chr3 19275784 19276184 -208248394 - L1MEc LINE L1 -3598 2617 2224 1931 153 10 0 chr3 19276184 19276491 -208248087 - AluSx SINE Alu -2 310 1 740 215 98 55 chr3 19276491 19276602 -208247976 - L1MEc LINE L1 -3991 2224 2119 2459 272 56 16 chr3 19276631 19277466 -208247112 - L1MEc LINE L1 -5442 954 86 300 327 92 33 chr3 19277939 19278092 -208246486 + L3 LINE CR1 1407 1568 -9 290 308 0 0 chr3 19279781 19279872 -208244706 + MIR SINE MIR 80 170 -92 360 339 65 14 chr3 19280932 19281283 -208243295 + L1ME2 LINE L1 4912 5280 -866 755 345 76 25 chr3 19281316 19281566 -208243012 + L1ME2 LINE L1 5330 5566 -598 1863 134 7 3 chr3 19281566 19281856 -208242722 + AluJo SINE Alu 1 291 -21 755 345 76 25 chr3 19281856 19282194 -208242384 + L1ME2 LINE L1 5566 5948 -216 1002 146 18 12 chr3 19282391 19282562 -208242016 + FAM SINE Alu 4 175 0 209 204 61 0 chr3 19282770 19282819 -208241759 + MIR SINE MIR 98 149 -59 282 365 79 17 chr3 19284814 19285055 -208239523 + L2 LINE L2 2985 3240 -32 230 238 20 99 chr3 19285503 19285604 -208238974 - MLT1I LTR MaLR -120 289 197 191 326 11 100 chr3 19285818 19286008 -208238570 - L2 LINE L2 -599 2715 2543 218 340 20 27 chr3 19286907 19287057 -208237521 - MIR3 SINE MIR -13 195 47 1158 249 78 0 chr3 19287285 19287578 -208237000 + MER58B DNA MER1_type 1 316 -25 676 296 135 11 chr3 19287580 19287951 -208236627 + L2 LINE L2 2895 3311 -2 946 265 100 41 chr3 19288265 19288654 -208235924 + MLT1K LTR MaLR 146 557 -31 728 275 106 44 chr3 19289875 19290330 -208234248 - MLT1L LTR MaLR 0 615 133 26 0 0 0 chr3 19290503 19290529 -208234049 + GC_rich Low_complexity Low_complexity 1 26 0 1787 160 16 3 chr3 19290693 19290999 -208233579 - AluJo SINE Alu -2 310 1 1753 150 20 14 chr3 19291270 19291564 -208233014 + AluSx SINE Alu 1 296 -16 189 211 96 0 chr3 19291740 19291792 -208232786 + MIR SINE MIR 118 174 -88 4513 119 12 16 chr3 19291888 19292353 -208232225 - L1PB3 LINE L1 -6 6148 5685 2169 106 0 0 chr3 19292353 19292645 -208231933 - AluSx SINE Alu -20 292 1 4513 119 12 16 chr3 19292645 19292865 -208231713 - L1PB3 LINE L1 -469 5685 5466 254 260 27 0 chr3 19292865 19292938 -208231640 + MIR SINE MIR 91 165 -97 250 306 33 92 chr3 19293189 19293460 -208231118 + MER102a DNA MER1_type 67 321 -9 210 257 147 0 chr3 19293913 19294022 -208230556 - MIR SINE MIR -83 179 55 188 277 43 11 chr3 19294189 19294283 -208230295 - L2 LINE L2 -251 3021 2925 639 280 134 41 chr3 19295540 19295979 -208228599 - MLT1J LTR MaLR -9 502 23 2194 118 0 0 chr3 19296397 19296710 -208227868 + AluSq SINE Alu 1 313 0 535 277 64 20 chr3 19296880 19297082 -208227496 + L1ME LINE L1 5566 5776 -345 420 293 24 69 chr3 19297170 19297302 -208227276 + L2 LINE L2 2334 2451 -863 2157 97 3 7 chr3 19297302 19297621 -208226957 + AluSx SINE Alu 1 312 0 420 293 24 69 chr3 19297621 19297734 -208226844 + L2 LINE L2 2451 2568 -746 228 198 22 33 chr3 19297748 19297839 -208226739 + C-rich Low_complexity Low_complexity 3 92 0 681 101 0 0 chr3 19299145 19299244 -208225334 + (TA)n Simple_repeat Simple_repeat 2 100 0 4360 253 50 33 chr3 19299244 19300684 -208223894 + L1M4 LINE L1 2487 3960 -2186 2006 126 0 41 chr3 19300684 19301002 -208223576 + AluSx SINE Alu 7 311 -1 4360 253 50 33 chr3 19301002 19301240 -208223338 + L1M4 LINE L1 3960 4193 -1953 346 313 85 31 chr3 19301448 19301707 -208222871 - L2 LINE L2 -208 3105 2833 306 260 36 12 chr3 19301686 19301800 -208222778 - MIR SINE MIR -13 195 79 * 425 234 19 9 chr3 19302226 19302333 -208222245 + L1MEd LINE L1 960 1067 -5052 212 387 75 0 chr3 19302648 19302741 -208221837 + L2 LINE L2 3170 3269 -3 202 296 22 74 chr3 19302732 19302867 -208221711 - MIR SINE MIR -128 134 7 * 1868 133 0 0 chr3 19303445 19303716 -208220862 + AluSx SINE Alu 25 295 -17 379 247 7 103 chr3 19303844 19303890 -208220688 + MER5A DNA MER1_type 32 81 -108 2035 125 7 0 chr3 19303890 19304178 -208220400 + AluSq SINE Alu 1 290 -23 379 247 7 103 chr3 19304178 19304277 -208220301 + MER5A DNA MER1_type 81 163 -26 227 340 21 64 chr3 19304301 19304442 -208220136 + MIR SINE MIR 58 192 -70 834 135 0 35 chr3 19305062 19305203 -208219375 - AluJo SINE Alu -176 136 1 297 277 78 21 chr3 19307345 19307486 -208217092 - L1MC4a LINE L1 -1815 5993 5845 306 73 0 0 chr3 19309232 19309273 -208215305 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 402 39 0 0 chr3 19310280 19310332 -208214246 + (TG)n Simple_repeat Simple_repeat 2 53 0 713 210 193 8 chr3 19310350 19310593 -208213985 + MLT1F LTR MaLR 185 472 -70 1019 248 33 4 chr3 19310644 19310886 -208213692 + LTR42 LTR ERVL 247 495 0 283 291 23 12 chr3 19310886 19310964 -208213614 + MLT1F LTR MaLR 489 567 0 276 356 74 7 chr3 19311011 19311160 -208213418 + L2 LINE L2 3130 3288 -25 463 292 41 41 chr3 19311196 19311367 -208213211 + MIR SINE MIR 23 193 -69 223 244 11 11 chr3 19311750 19311840 -208212738 + (TG)n Simple_repeat Simple_repeat 1 90 0 411 292 188 48 chr3 19311953 19312330 -208212248 - LTR16C LTR ERVL 0 491 62 248 298 145 0 chr3 19312832 19312963 -208211615 + LTR67 LTR ERVL 408 557 0 281 283 169 5 chr3 19313009 19313193 -208211385 - L1ME4a LINE L1 -52 6069 5856 740 330 78 23 chr3 19313238 19313754 -208210824 + L2 LINE L2 2713 3249 -64 2310 99 78 20 chr3 19313828 19314172 -208210406 + THE1B LTR MaLR 1 364 0 8251 79 15 1 chr3 19314172 19315342 -208209236 + THE1B-int LTR MaLR 1 1187 -393 2224 94 3 7 chr3 19315561 19315870 -208208708 + AluSg SINE Alu 2 309 -1 251 239 60 30 chr3 19315953 19316020 -208208558 - MIR SINE MIR -58 150 82 195 362 13 80 chr3 19317094 19317318 -208207260 - L2 LINE L2 -467 2847 2639 316 364 111 10 chr3 19317321 19317519 -208207059 - MIR SINE MIR -4 258 41 244 367 37 0 chr3 19317551 19317660 -208206918 + MIR SINE MIR 64 176 -86 255 245 60 26 chr3 19318439 19318515 -208206063 + MIR3 SINE MIR 78 159 -49 702 224 49 22 chr3 19318517 19318700 -208205878 + MER5A DNA MER1_type 2 189 0 572 284 162 8 chr3 19319083 19319792 -208204786 + L2 LINE L2 2234 3059 -254 409 233 107 13 chr3 19319929 19320084 -208204494 + MIR SINE MIR 59 245 -17 345 307 30 0 chr3 19320252 19320353 -208204225 + MLT1F1 LTR MaLR 6 109 -458 1159 225 31 64 chr3 19320353 19320713 -208203865 - MLT1A1 LTR MaLR 0 365 18 861 223 217 57 chr3 19320723 19321110 -208203468 + MLT1F1 LTR MaLR 100 541 -1 1525 234 71 5 chr3 19321545 19321968 -208202610 + L1MB7 LINE L1 5725 6175 -9 485 313 65 9 chr3 19322921 19323138 -208201440 - L2 LINE L2 -1 3312 3084 516 259 98 15 chr3 19323150 19323355 -208201223 - MLT1A1 LTR MaLR 0 365 144 490 267 53 24 chr3 19323448 19323543 -208201035 + L1MEc LINE L1 1298 1389 -5218 2491 169 40 5 chr3 19323543 19323988 -208200590 + LOR1b LTR ERV1 1 461 0 490 267 53 24 chr3 19323988 19324218 -208200360 + L1MEc LINE L1 1389 1833 -4774 339 250 36 0 chr3 19324228 19324312 -208200266 + L1MEc LINE L1 2673 2759 -3667 4254 113 117 78 chr3 19324312 19325713 -208198865 + pTR5 LTR ERV1 66 2438 0 2261 68 0 0 chr3 19325728 19326040 -208198538 + AluY SINE Alu 1 312 0 552 212 101 0 chr3 19326040 19326229 -208198349 + L1MEc LINE L1 2758 2965 -3461 280 306 234 8 chr3 19326252 19326376 -208198202 - L2 LINE L2 0 3272 3121 536 267 24 48 chr3 19326595 19326760 -208197818 + L2 LINE L2 3153 3313 0 341 330 18 37 chr3 19326914 19327132 -208197446 + MLT1K LTR MaLR 3 216 -372 361 294 20 20 chr3 19327179 19327332 -208197246 + (TGGA)n Simple_repeat Simple_repeat 4 156 0 271 172 16 0 chr3 19327340 19327404 -208197174 + L1MEc LINE L1 2983 3047 -3379 2900 251 67 72 chr3 19327406 19327621 -208196957 + L1MEc LINE L1 3137 3352 -3074 2130 113 0 25 chr3 19327621 19327906 -208196672 + AluY SINE Alu 1 279 -32 354 45 0 0 chr3 19327906 19327950 -208196628 + (CAAA)n Simple_repeat Simple_repeat 3 46 0 2130 113 0 25 chr3 19327950 19327983 -208196595 + AluY SINE Alu 279 311 0 2900 251 67 72 chr3 19327983 19328055 -208196523 + L1MEc LINE L1 3352 3423 -3003 1785 127 58 0 chr3 19328055 19328330 -208196248 + AluSg SINE Alu 16 306 -4 2900 251 67 72 chr3 19328330 19328392 -208196186 + L1MEc LINE L1 3423 3484 -2942 291 122 0 0 chr3 19328392 19328441 -208196137 - MER58 DNA MER1_type 0 2420 2372 2900 251 67 72 chr3 19328441 19329572 -208195006 + L1MEc LINE L1 3484 4658 -1768 213 326 143 0 chr3 19329876 19329974 -208194604 + MIR SINE MIR 41 152 -56 288 331 201 14 chr3 19329980 19330273 -208194305 + L2 LINE L2 2965 3312 -1 207 264 139 0 chr3 19330405 19330477 -208194101 - MIR SINE MIR -75 133 52 303 284 98 0 chr3 19330926 19331028 -208193550 + L2 LINE L2 3145 3256 -16 342 162 20 10 chr3 19331699 19331798 -208192780 + CT-rich Low_complexity Low_complexity 2 101 0 270 250 15 0 chr3 19331817 19331885 -208192693 + (TCCA)n Simple_repeat Simple_repeat 3 71 0 314 291 227 0 chr3 19331895 19332005 -208192573 - L2 LINE L2 -13 3259 3125 579 251 23 46 chr3 19332221 19332396 -208192182 + L2 LINE L2 3141 3311 -2 1714 188 28 6 chr3 19332420 19332772 -208191806 - MLT1A1 LTR MaLR 0 365 6 975 218 9 18 chr3 19333159 19333384 -208191194 - MIR SINE MIR -30 232 10 405 296 206 0 chr3 19333397 19333640 -208190938 + MLT1K LTR MaLR 230 522 -66 360 174 174 9 chr3 19334450 19334565 -208190013 + L2 LINE L2 2921 3054 -259 1520 153 80 22 chr3 19335040 19335314 -208189264 + AluJo SINE Alu 13 302 -10 234 0 0 0 chr3 19336216 19336242 -208188336 + (T)n Simple_repeat Simple_repeat 1 26 0 811 124 0 0 chr3 19336242 19336355 -208188223 - AluSq/x SINE Alu -180 133 21 779 237 49 95 chr3 19336694 19336792 -208187786 + MLT1C LTR MaLR 2 103 -364 2571 48 0 10 chr3 19336792 19337106 -208187472 + AluY SINE Alu 1 311 0 779 237 49 95 chr3 19337106 19337458 -208187120 + MLT1C LTR MaLR 103 431 -36 1296 206 31 34 chr3 19338614 19338969 -208185609 - MLT1B LTR MaLR -29 361 8 237 293 78 37 chr3 19338991 19339182 -208185396 + LTR33 LTR ERVL 161 359 -162 1670 241 40 2 chr3 19339534 19340230 -208184348 + L1MD2 LINE L1 4929 5648 -711 863 216 0 5 chr3 19340232 19340426 -208184152 + L1MD2 LINE L1 5769 5961 -398 1381 195 66 18 chr3 19340432 19340765 -208183813 + L1MD2 LINE L1 6010 6358 -1 760 254 117 0 chr3 19340841 19341097 -208183481 + MLT1G3 LTR MaLR 143 428 -102 480 111 0 0 chr3 19341457 19341529 -208183049 + (TG)n Simple_repeat Simple_repeat 1 72 0 187 306 69 0 chr3 19342474 19342546 -208182032 - MIR SINE MIR -99 163 87 213 264 18 117 chr3 19343330 19343493 -208181085 + MIR SINE MIR 3 149 -113 585 98 33 54 chr3 19344611 19344795 -208179783 + (CA)n Simple_repeat Simple_repeat 1 180 0 515 148 40 17 chr3 19344842 19345018 -208179560 + (CA)n Simple_repeat Simple_repeat 1 180 0 336 298 128 21 chr3 19345517 19345658 -208178920 + MIR SINE MIR 66 221 -41 270 352 61 37 chr3 19345785 19345985 -208178593 - MIR SINE MIR -41 221 14 1759 153 35 0 chr3 19346068 19346235 -208178343 - AluJo SINE Alu -12 300 117 207 0 0 0 chr3 19346235 19346258 -208178320 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1759 153 35 0 chr3 19346258 19346378 -208178200 - AluJo SINE Alu -195 117 3 3835 176 51 3 chr3 19346845 19347548 -208177030 + L1MB3 LINE L1 5446 6182 -1 291 343 20 0 chr3 19347622 19347721 -208176857 - MIR SINE MIR -32 230 130 428 263 66 20 chr3 19347724 19347876 -208176702 + LTR33 LTR ERVL 49 207 -314 455 153 10 0 chr3 19347898 19347996 -208176582 + (CA)n Simple_repeat Simple_repeat 2 100 0 335 252 46 23 chr3 19348008 19348139 -208176439 + LTR33 LTR ERVL 338 471 -50 180 237 0 0 chr3 19348570 19348608 -208175970 - L2 LINE L2 -17 3255 3218 2304 84 16 0 chr3 19349447 19349831 -208174747 - AluSq SINE Alu 0 389 1 293 250 7 0 chr3 19350189 19350329 -208174249 + (TCCA)n Simple_repeat Simple_repeat 2 142 0 643 188 11 0 chr3 19350350 19350526 -208174052 + (TCCA)n Simple_repeat Simple_repeat 3 180 0 685 171 11 0 chr3 19350537 19350712 -208173866 + (TCCA)n Simple_repeat Simple_repeat 3 179 0 669 194 5 0 chr3 19350724 19350947 -208173631 + (TCCA)n Simple_repeat Simple_repeat 1 224 0 510 184 19 0 chr3 19350948 19351051 -208173527 + Tigger7 DNA MER2_type 2380 2484 -7 700 221 0 0 chr3 19351062 19351225 -208173353 + L1ME LINE L1 5336 5498 -664 255 314 23 0 chr3 19351248 19351334 -208173244 + L1ME3 LINE L1 6073 6160 -2 216 302 225 22 chr3 19351862 19352276 -208172302 + L2 LINE L2 2268 2765 -549 388 325 155 20 chr3 19352332 19352726 -208171852 + L2 LINE L2 2867 3313 0 327 244 89 22 chr3 19354710 19354800 -208169778 + MIR SINE MIR 34 129 -79 184 387 32 11 chr3 19354852 19354945 -208169633 + MIR SINE MIR 2 96 -166 385 253 61 0 chr3 19355764 19355863 -208168715 + L2 LINE L2 3209 3313 0 188 219 0 24 chr3 19355865 19355906 -208168672 - L2 LINE L2 -94 3219 3180 274 344 49 0 chr3 19355929 19356051 -208168527 - L3 LINE CR1 -86 1491 1364 213 337 74 16 chr3 19356410 19356600 -208167978 + L2 LINE L2 2868 3068 -204 531 215 40 40 chr3 19356745 19356894 -208167684 + MIR SINE MIR 31 179 -83 3085 206 45 37 chr3 19356901 19358273 -208166305 - L1MB8 LINE L1 -169 6009 4629 180 404 10 0 chr3 19358279 19358378 -208166200 - L3 LINE CR1 -730 847 748 347 242 297 12 chr3 19361147 19361490 -208163088 - LTR33 LTR ERVL -66 455 15 859 269 80 12 chr3 19361888 19362226 -208162352 - L1MB7 LINE L1 -64 6120 5760 403 228 98 53 chr3 19362348 19362594 -208161984 + MER113 DNA MER1_type? 6 262 -259 196 260 0 20 chr3 19362789 19362839 -208161739 + MIR3 SINE MIR 160 208 0 250 273 78 0 chr3 19363029 19363106 -208161472 + L2 LINE L2 3188 3270 -2 398 306 148 29 chr3 19363651 19363929 -208160649 + L2 LINE L2 2456 2766 -548 265 179 170 18 chr3 19364885 19364997 -208159581 - MER102a DNA MER1_type -6 324 196 408 174 35 0 chr3 19366741 19366827 -208157751 - L1MB4 LINE L1 -1 6179 6091 2406 168 46 17 chr3 19366827 19367361 -208157217 - L1MB3 LINE L1 -133 6050 5498 186 335 125 13 chr3 19367995 19368147 -208156431 - L3 LINE CR1 -1 1576 1408 433 361 66 0 chr3 19368665 19368892 -208155686 + MIR SINE MIR 2 243 -19 217 336 96 28 chr3 19370279 19370529 -208154049 - L2 LINE L2 -2 3311 3045 2206 80 10 3 chr3 19370602 19370901 -208153677 - AluSx SINE Alu -11 301 1 722 241 23 11 chr3 19370926 19371100 -208153478 + MIR SINE MIR 1 176 -86 460 228 30 0 chr3 19371098 19371199 -208153379 - L2 LINE L2 -1 3312 3209 * 778 124 0 9 chr3 19371214 19371327 -208153251 + FLAM_C SINE Alu 24 135 -8 648 124 33 50 chr3 19371713 19371815 -208152763 + FRAM SINE Alu 57 158 -154 2379 87 3 0 chr3 19371815 19372125 -208152453 + AluSx SINE Alu 1 311 -1 648 124 33 50 chr3 19372125 19372143 -208152435 + FRAM SINE Alu 158 175 -1 434 274 42 10 chr3 19372145 19372345 -208152233 - L2 LINE L2 -86 3227 2712 622 307 117 4 chr3 19373342 19373771 -208150807 + L2 LINE L2 2776 3272 0 297 304 76 35 chr3 19374379 19374550 -208150028 + L2 LINE L2 2889 3066 -247 * 721 237 24 26 chr3 19374522 19374706 -208149872 + MIR SINE MIR 51 235 -27 8201 115 35 11 chr3 19374718 19375984 -208148594 - HSMAR2 DNA Mariner -1 1301 5 205 277 0 0 chr3 19375984 19376031 -208148547 + (TG)n Simple_repeat Simple_repeat 1 47 0 1057 200 177 16 chr3 19376035 19376345 -208148233 - MLT1A2 LTR MaLR 0 374 15 786 313 47 33 chr3 19376483 19376911 -208147667 + MER20B DNA MER1_type 311 744 -39 1765 201 60 0 chr3 19377428 19377879 -208146699 + L1MB3 LINE L1 5706 6183 0 322 344 33 13 chr3 19377879 19378030 -208146548 - MER5A DNA MER1_type -28 161 8 430 299 113 25 chr3 19378491 19378695 -208145883 + MIR SINE MIR 20 241 -21 416 265 0 24 chr3 19378910 19379080 -208145498 + (TG)n Simple_repeat Simple_repeat 1 166 0 181 247 137 0 chr3 19382379 19382452 -208142126 + MIR SINE MIR 63 145 -63 395 218 126 23 chr3 19383027 19383201 -208141377 + L2 LINE L2 2873 3064 -249 1098 253 29 9 chr3 19384408 19384794 -208139784 + L1MB3 LINE L1 5810 6184 0 1649 161 53 27 chr3 19384809 19385108 -208139470 + AluJo SINE Alu 1 307 -5 237 32 0 0 chr3 19385841 19385872 -208138706 - MER103 DNA DNA -83 83 53 419 269 31 0 chr3 19386592 19386722 -208137856 + L1MB3 LINE L1 6041 6174 -9 186 305 17 0 chr3 19387150 19387209 -208137369 - MIR SINE MIR -87 121 62 333 254 82 33 chr3 19387313 19387435 -208137143 + L1ME3A LINE L1 6033 6160 -10 273 269 51 0 chr3 19387555 19387633 -208136945 + GA-rich Low_complexity Low_complexity 4 85 0 274 300 0 73 chr3 19388707 19388817 -208135761 - L2 LINE L2 -1 3312 3211 845 150 0 0 chr3 19388912 19389039 -208135539 - AluSg/x SINE Alu -19 293 167 1345 240 77 52 chr3 19389732 19390197 -208134381 - MLT1H LTR MaLR -16 533 52 2031 130 3 3 chr3 19390197 19390498 -208134080 + AluSx SINE Alu 1 301 -11 1345 240 77 52 chr3 19390498 19390552 -208134026 - MLT1H LTR MaLR -497 52 1 1630 249 23 0 chr3 19390819 19391252 -208133326 + L1MB3 LINE L1 5739 6181 -2 286 370 66 11 chr3 19392264 19392445 -208132133 - L3 LINE CR1 -730 847 657 197 351 26 0 chr3 19393339 19393416 -208131162 + MIR SINE MIR 148 226 -36 446 177 0 0 chr3 19393455 19393534 -208131044 - MIR SINE MIR -105 157 79 249 125 0 0 chr3 19393534 19393574 -208131004 - MIR SINE MIR -144 118 79 278 125 0 0 chr3 19393574 19393614 -208130964 - MIR SINE MIR -144 118 79 454 194 48 0 chr3 19393614 19393717 -208130861 - MIR SINE MIR -144 118 11 2443 68 0 3 chr3 19393875 19394183 -208130395 - AluY SINE Alu -4 307 1 456 194 93 37 chr3 19394315 19394423 -208130155 + MIR SINE MIR 36 149 -59 287 321 21 1 chr3 19394579 19394684 -208129894 + MIR SINE MIR 41 147 -61 1775 105 46 56 chr3 19395127 19395313 -208129265 - AluSx SINE Alu -9 303 120 330 45 0 0 chr3 19395313 19395357 -208129221 + (TTTTA)n Simple_repeat Simple_repeat 1 44 0 1775 105 46 56 chr3 19395357 19395476 -208129102 - AluSx SINE Alu -192 120 1 1002 286 135 12 chr3 19395477 19396174 -208128404 + L2 LINE L2 2519 3313 0 4217 174 11 28 chr3 19396731 19397430 -208127148 - L1MB3 LINE L1 -2 6181 5495 2381 84 0 0 chr3 19397430 19397741 -208126837 - AluY SINE Alu 0 311 1 4217 174 11 28 chr3 19397741 19397829 -208126749 - L1MB3 LINE L1 -688 5495 5407 726 235 5 51 chr3 19397850 19398046 -208126532 - MIR SINE MIR -46 216 30 217 286 102 0 chr3 19399519 19399617 -208124961 - MIR SINE MIR -114 148 41 1006 155 0 0 chr3 19400326 19400481 -208124097 - FRAM SINE Alu -13 163 9 636 234 119 35 chr3 19400576 19400777 -208123801 + MER20 DNA MER1_type 1 218 -1 266 102 44 257 chr3 19400864 19401070 -208123508 + L1MB4 LINE L1 6019 6180 0 198 302 47 35 chr3 19401174 19401260 -208123318 - MIR SINE MIR -87 175 89 547 270 37 11 chr3 19401647 19401835 -208122743 + MIR SINE MIR 45 237 -25 2109 182 266 16 chr3 19402430 19403062 -208121516 + L1MC1 LINE L1 5544 6333 0 1762 166 13 19 chr3 19403108 19403422 -208121156 + AluJo SINE Alu 1 312 0 346 343 120 0 chr3 19403599 19403882 -208120696 + L2 LINE L2 2492 2808 -506 266 265 20 41 chr3 19404810 19404908 -208119670 + GA-rich Low_complexity Low_complexity 5 100 0 197 261 54 33 chr3 19405364 19405456 -208119122 - L2 LINE L2 -27 3245 3152 568 266 85 25 chr3 19405881 19406241 -208118337 + LTR16A LTR ERVL 59 457 0 241 271 57 0 chr3 19407126 19407196 -208117382 + MIR SINE MIR 100 173 -89 2265 183 55 36 chr3 19407236 19407701 -208116877 + L1MB3 LINE L1 5610 6090 -93 1546 165 4 8 chr3 19407701 19407984 -208116594 + AluSx SINE Alu 29 310 0 2265 183 55 36 chr3 19407984 19408079 -208116499 + L1MB3 LINE L1 6090 6182 -1 1953 90 19 4 chr3 19408161 19408428 -208116150 - AluSg SINE Alu -19 291 21 225 274 41 0 chr3 19408557 19408630 -208115948 + MIR SINE MIR 77 152 -110 554 198 6 0 chr3 19409509 19409686 -208114892 + CT-rich Low_complexity Low_complexity 1 178 0 996 307 30 30 chr3 19410246 19410679 -208113899 - MLT1J LTR MaLR -78 433 1 220 204 0 0 chr3 19410819 19410863 -208113715 - MIR SINE MIR -96 166 123 2132 162 16 14 chr3 19411713 19412077 -208112501 + MLT1A1 LTR MaLR 1 365 0 2519 61 0 0 chr3 19412315 19412626 -208111952 - AluY SINE Alu 0 311 1 498 288 8 0 chr3 19412922 19413047 -208111531 + MIR SINE MIR 20 145 -117 268 276 29 48 chr3 19413349 19413454 -208111124 - Charlie7 DNA MER1_type -2505 107 5 196 247 21 65 chr3 19413703 19413796 -208110782 - L2 LINE L2 -243 3029 2941 1235 241 33 5 chr3 19414501 19415002 -208109576 + MLT1H1 LTR MaLR 1 547 -8 199 311 107 0 chr3 19415041 19415144 -208109434 - L2 LINE L2 0 3313 3200 2179 210 33 42 chr3 19415355 19415805 -208108773 + L1M4c LINE L1 2214 2667 -3715 2360 88 0 0 chr3 19415805 19416111 -208108467 + AluY SINE Alu 1 306 -5 2179 210 33 42 chr3 19416111 19416221 -208108357 + L1M4c LINE L1 2667 2777 -3605 1748 190 3 0 chr3 19416221 19416532 -208108046 + AluJo SINE Alu 1 312 0 2179 210 33 42 chr3 19416532 19416828 -208107750 + L1M4c LINE L1 2777 3056 -3326 268 288 0 25 chr3 19416920 19417000 -208107578 + MIR SINE MIR 116 193 -69 562 260 34 64 chr3 19417743 19417947 -208106631 - MIR SINE MIR -57 205 8 576 252 77 42 chr3 19418356 19418666 -208105912 + L2 LINE L2 2615 2935 -379 319 279 0 47 chr3 19418658 19418787 -208105791 - MIR SINE MIR -81 181 59 * 598 308 76 13 chr3 19419691 19419928 -208104650 + MIR SINE MIR 2 253 -9 280 218 188 0 chr3 19420244 19420345 -208104233 + L2 LINE L2 2939 3058 -214 2565 61 0 0 chr3 19420788 19421098 -208103480 - AluY SINE Alu -1 310 1 195 320 32 40 chr3 19421205 19421330 -208103248 - MIR SINE MIR -116 146 23 252 59 0 0 chr3 19421817 19421851 -208102727 + (A)n Simple_repeat Simple_repeat 1 34 0 2155 96 0 3 chr3 19423243 19423525 -208101053 + AluSx SINE Alu 1 281 -31 575 302 23 18 chr3 19423533 19423781 -208100797 + MIR SINE MIR 3 250 -12 252 272 86 0 chr3 19423907 19423988 -208100590 - L2 LINE L2 -1 3312 3225 366 276 89 23 chr3 19424705 19424937 -208099641 - MIR SINE MIR 0 262 13 346 264 203 14 chr3 19425335 19425483 -208099095 + MER5A DNA MER1_type 9 184 -5 41 48 0 0 chr3 19427456 19427518 -208097060 + GC_rich Low_complexity Low_complexity 1 62 0 353 300 0 32 chr3 19427581 19427784 -208096794 + C-rich Low_complexity Low_complexity 1 196 0 346 343 120 0 chr3 19428095 19428378 -208096200 - L2 LINE L2 -506 2808 2492 1762 166 13 19 chr3 19428555 19428869 -208095709 - AluJo SINE Alu 0 312 1 2318 171 264 14 chr3 19428915 19429547 -208095031 - L1MC1 LINE L1 0 6333 5544 547 270 37 11 chr3 19430142 19430330 -208094248 - MIR SINE MIR -25 237 45 198 302 47 35 chr3 19430717 19430803 -208093775 + MIR SINE MIR 89 175 -87 266 102 44 257 chr3 19430907 19431113 -208093465 - L1MB4 LINE L1 0 6180 6019 636 234 119 35 chr3 19431200 19431401 -208093177 - MER20 DNA MER1_type -1 218 1 1006 155 0 0 chr3 19431496 19431651 -208092927 + FRAM SINE Alu 9 163 -13 229 283 91 0 chr3 19432360 19432459 -208092119 + MIR SINE MIR 41 148 -114 726 235 5 51 chr3 19433932 19434128 -208090450 + MIR SINE MIR 30 216 -46 4174 176 11 29 chr3 19434149 19434237 -208090341 + L1MB3 LINE L1 5407 5495 -688 2381 84 0 0 chr3 19434237 19434548 -208090030 + AluY SINE Alu 1 311 0 4174 176 11 29 chr3 19434548 19435248 -208089330 + L1MB3 LINE L1 5495 6181 -2 1002 286 135 12 chr3 19435805 19436502 -208088076 - L2 LINE L2 0 3313 2519 1791 101 45 62 chr3 19436503 19436622 -208087956 + AluSx SINE Alu 1 120 -192 396 0 0 0 chr3 19436622 19436666 -208087912 + (TAAAA)n Simple_repeat Simple_repeat 1 44 0 1791 101 45 62 chr3 19436666 19436854 -208087724 + AluSx SINE Alu 120 303 -9 287 321 21 1 chr3 19437297 19437402 -208087176 - MIR SINE MIR -61 147 41 456 194 93 37 chr3 19437558 19437666 -208086912 - MIR SINE MIR -59 149 36 2443 68 0 3 chr3 19437798 19438106 -208086472 + AluY SINE Alu 1 307 -4 454 194 48 0 chr3 19438264 19438367 -208086211 + MIR SINE MIR 11 118 -144 278 125 0 0 chr3 19438367 19438407 -208086171 + MIR SINE MIR 79 118 -144 249 125 0 0 chr3 19438407 19438447 -208086131 + MIR SINE MIR 79 118 -144 446 177 0 0 chr3 19438447 19438526 -208086052 + MIR SINE MIR 79 157 -105 197 351 26 0 chr3 19438565 19438642 -208085936 - MIR SINE MIR -36 226 148 286 370 66 11 chr3 19439536 19439717 -208084861 + L3 LINE CR1 657 847 -730 1647 251 21 0 chr3 19440729 19441163 -208083415 - L1MB3 LINE L1 -2 6181 5739 1345 240 77 52 chr3 19441430 19441484 -208083094 + MLT1H LTR MaLR 1 52 -497 2031 130 3 3 chr3 19441484 19441785 -208082793 - AluSx SINE Alu -11 301 1 1345 240 77 52 chr3 19441785 19442250 -208082328 + MLT1H LTR MaLR 52 533 -16 845 150 0 0 chr3 19442943 19443070 -208081508 + AluSg/x SINE Alu 167 293 -19 274 300 0 73 chr3 19443165 19443275 -208081303 + L2 LINE L2 3211 3312 -1 215 292 42 58 chr3 19443341 19443461 -208081117 - MIR SINE MIR -62 146 29 273 269 51 0 chr3 19444349 19444427 -208080151 + CT-rich Low_complexity Low_complexity 4 85 0 333 254 82 33 chr3 19444547 19444669 -208079909 - L1ME3A LINE L1 -10 6160 6033 186 305 17 0 chr3 19444773 19444832 -208079746 + MIR SINE MIR 62 121 -87 419 269 31 0 chr3 19445260 19445390 -208079188 - L1MB3 LINE L1 -9 6174 6041 1774 76 0 13 chr3 19445568 19445805 -208078773 + AluY SINE Alu 74 307 -4 1112 230 20 69 chr3 19445805 19445916 -208078662 + L1M4 LINE L1 2433 2548 -3598 1764 186 3 0 chr3 19445916 19446227 -208078351 + AluJo SINE Alu 1 312 0 1112 230 20 69 chr3 19446227 19446523 -208078055 + L1M4 LINE L1 2548 2820 -3326 268 288 0 25 chr3 19446615 19446695 -208077883 + MIR SINE MIR 116 193 -69 562 260 34 64 chr3 19447438 19447642 -208076936 - MIR SINE MIR -57 205 8 529 261 77 42 chr3 19448051 19448361 -208076217 + L2 LINE L2 2615 2935 -379 319 279 0 47 chr3 19448353 19448482 -208076096 - MIR SINE MIR -81 181 59 * 598 308 76 13 chr3 19449386 19449623 -208074955 + MIR SINE MIR 2 253 -9 280 218 188 0 chr3 19449939 19450040 -208074538 + L2 LINE L2 2939 3058 -214 2167 154 0 3 chr3 19450480 19450792 -208073786 - AluSx SINE Alu -1 311 1 270 0 0 0 chr3 19452193 19452223 -208072355 + (T)n Simple_repeat Simple_repeat 1 30 0 198 302 32 48 chr3 19452710 19452836 -208071742 + MIR SINE MIR 23 146 -116 1630 61 0 0 chr3 19452943 19453139 -208071439 + AluY SINE Alu 1 196 -115 851 173 98 67 chr3 19453261 19453419 -208071159 + L1MB3 LINE L1 5920 6091 -92 1546 165 4 8 chr3 19453419 19453702 -208070876 + AluSx SINE Alu 29 310 0 851 173 98 67 chr3 19453702 19453797 -208070781 + L1MB3 LINE L1 6091 6182 -1 1953 90 19 4 chr3 19453879 19454146 -208070432 - AluSg SINE Alu -19 291 21 225 274 41 0 chr3 19454275 19454348 -208070230 + MIR SINE MIR 77 152 -110 533 203 6 0 chr3 19455227 19455404 -208069174 + CT-rich Low_complexity Low_complexity 1 178 0 987 316 28 28 chr3 19455963 19456396 -208068182 - MLT1J LTR MaLR -78 433 1 220 204 0 0 chr3 19456536 19456580 -208067998 - MIR SINE MIR -96 166 123 2155 159 16 14 chr3 19457429 19457793 -208066785 + MLT1A1 LTR MaLR 1 365 0 2501 64 0 0 chr3 19458031 19458342 -208066236 - AluY SINE Alu 0 311 1 203 320 32 40 chr3 19458449 19458574 -208066004 - MIR SINE MIR -116 146 23 288 53 0 0 chr3 19459061 19459099 -208065479 + (A)n Simple_repeat Simple_repeat 1 38 0 2155 96 0 3 chr3 19460490 19460772 -208063806 + AluSx SINE Alu 1 281 -31 554 298 22 20 chr3 19460780 19461018 -208063560 + MIR SINE MIR 3 238 -24 252 272 86 0 chr3 19461157 19461238 -208063340 - L2 LINE L2 -1 3312 3225 366 276 89 23 chr3 19461955 19462187 -208062391 - MIR SINE MIR 0 262 13 346 264 203 14 chr3 19462585 19462733 -208061845 + MER5A DNA MER1_type 9 184 -5 22 0 0 0 chr3 19464641 19464663 -208059915 + GC_rich Low_complexity Low_complexity 1 22 0 33 43 0 0 chr3 19464710 19464757 -208059821 + GC_rich Low_complexity Low_complexity 1 47 0 23 92 0 0 chr3 19464902 19464967 -208059611 + GC_rich Low_complexity Low_complexity 1 65 0 257 130 65 13 chr3 19464978 19465055 -208059523 + (CGG)n Simple_repeat Simple_repeat 2 82 0 * 274 219 26 18 chr3 19465044 19465158 -208059420 + (CCG)n Simple_repeat Simple_repeat 1 115 0 863 104 0 35 chr3 19465481 19465625 -208058953 + FLAM_C SINE Alu 5 143 0 211 75 75 0 chr3 19465975 19466015 -208058563 + (TG)n Simple_repeat Simple_repeat 1 43 0 190 244 24 106 chr3 19467115 19467238 -208057340 - MIR SINE MIR -62 146 37 183 323 0 0 chr3 19468063 19468125 -208056453 + MIR SINE MIR 87 148 -114 480 111 0 0 chr3 19469079 19469151 -208055427 + (CA)n Simple_repeat Simple_repeat 1 72 0 852 238 116 43 chr3 19469437 19469766 -208054812 - MLT1G3 LTR MaLR -24 571 143 1458 198 66 18 chr3 19469842 19470175 -208054403 - L1MD2 LINE L1 -1 6594 6246 911 216 0 5 chr3 19470181 19470375 -208054203 - L1MD2 LINE L1 -398 6197 6005 1775 241 40 2 chr3 19470377 19471073 -208053505 - L1MD2 LINE L1 -711 5884 5165 305 296 70 42 chr3 19471426 19471639 -208052939 - LTR33 LTR ERVL -162 359 141 1399 206 31 34 chr3 19471639 19471994 -208052584 + MLT1B LTR MaLR 8 361 -29 611 249 63 75 chr3 19473150 19473499 -208051079 - MLT1C LTR MaLR -36 431 87 2505 49 0 10 chr3 19473502 19473810 -208050768 - AluY SINE Alu 0 311 7 3582 260 47 35 chr3 19473819 19475275 -208049303 - L1MD2 LINE L1 -2187 4195 2720 342 0 0 0 chr3 19475275 19475313 -208049265 + (TA)n Simple_repeat Simple_repeat 2 39 0 218 149 40 27 chr3 19476626 19476700 -208047878 + GA-rich Low_complexity Low_complexity 1 75 0 405 298 29 69 chr3 19476731 19476844 -208047734 - L2 LINE L2 -746 2568 2452 2194 90 3 7 chr3 19476844 19477163 -208047415 - AluSx SINE Alu 0 312 1 405 298 29 69 chr3 19477163 19477294 -208047284 - L2 LINE L2 -862 2452 2334 1987 92 10 39 chr3 19477430 19477736 -208046842 + AluY SINE Alu 7 303 -8 2345 55 0 39 chr3 19477767 19478078 -208046500 + AluY SINE Alu 1 299 -12 343 224 122 0 chr3 19478391 19478498 -208046080 + MIR SINE MIR 55 174 -88 325 323 160 10 chr3 19478737 19479025 -208045553 - MER102b DNA MER1_type 0 341 11 787 226 43 0 chr3 19479044 19479208 -208045370 - AluJb SINE Alu -2 310 140 278 331 42 0 chr3 19479249 19479391 -208045187 - MER117 DNA MER1_type -6 191 44 2229 96 7 0 chr3 19479582 19479884 -208044694 - AluY SINE Alu -7 304 1 1263 195 43 10 chr3 19479886 19480334 -208044244 - L1MD2 LINE L1 -3705 2677 2214 196 311 107 0 chr3 19480545 19480648 -208043930 + L2 LINE L2 3200 3313 0 1350 235 35 6 chr3 19480687 19481188 -208043390 - MLT1H1 LTR MaLR -8 547 1 183 247 21 65 chr3 19481893 19481986 -208042592 + L2 LINE L2 2941 3029 -243 296 284 28 46 chr3 19482231 19482340 -208042238 + Charlie7 DNA MER1_type 1 107 -2505 485 288 8 0 chr3 19482642 19482767 -208041811 - MIR SINE MIR -117 145 20 2518 58 0 0 chr3 19483063 19483374 -208041204 + AluY SINE Alu 1 311 0 2127 159 16 14 chr3 19483612 19483976 -208040602 - MLT1A1 LTR MaLR 0 365 1 215 204 0 0 chr3 19484824 19484868 -208039710 + MIR SINE MIR 123 166 -96 1110 316 28 28 chr3 19485008 19485441 -208039137 + MLT1J LTR MaLR 1 433 -78 533 203 6 0 chr3 19486000 19486177 -208038401 + GA-rich Low_complexity Low_complexity 1 178 0 1899 87 23 4 chr3 19487274 19487539 -208037039 + AluSg SINE Alu 21 290 -20 2084 103 7 3 chr3 19488001 19488301 -208036277 - AluSx SINE Alu -11 301 1 2313 58 0 39 chr3 19488390 19488699 -208035879 + AluY SINE Alu 3 299 -12 343 224 122 0 chr3 19489011 19489118 -208035460 + MIR SINE MIR 55 174 -88 325 323 160 10 chr3 19489357 19489645 -208034933 - MER102b DNA MER1_type 0 341 11 787 226 43 0 chr3 19489664 19489828 -208034750 - AluJb SINE Alu -2 310 140 278 331 42 0 chr3 19489869 19490011 -208034567 - MER117 DNA MER1_type -6 191 44 186 43 0 0 chr3 19490203 19490226 -208034352 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2019 108 0 4 chr3 19490226 19490505 -208034073 - AluSg SINE Alu -32 278 1 2045 87 56 0 chr3 19490711 19490997 -208033581 - AluY SINE Alu -8 303 2 526 287 118 4 chr3 19491770 19491976 -208032602 + Charlie2a DNA MER1_type 734 976 -1886 2084 108 7 0 chr3 19491976 19492271 -208032307 - AluSq SINE Alu -16 297 1 526 287 118 4 chr3 19492271 19492318 -208032260 + Charlie2a DNA MER1_type 976 1016 -1846 322 206 98 0 chr3 19493386 19493478 -208031100 + MER5A DNA MER1_type 9 109 -80 689 301 62 55 chr3 19493688 19494090 -208030488 - L2 LINE L2 -2 3270 2866 372 358 12 0 chr3 19494090 19494252 -208030326 - L1ME LINE L1 -329 5792 5629 227 184 0 20 chr3 19494754 19494803 -208029775 + MER53 DNA DNA 101 148 -41 672 265 0 6 chr3 19494988 19495154 -208029424 + MIR SINE MIR 33 197 -65 1949 86 32 4 chr3 19495170 19495449 -208029129 + AluSc SINE Alu 9 295 -14 2175 109 0 3 chr3 19495449 19495752 -208028826 + AluSp SINE Alu 1 302 -11 330 281 22 22 chr3 19495765 19495854 -208028724 - L1MC4 LINE L1 -1339 6703 6615 2330 83 0 0 chr3 19495854 19496154 -208028424 - AluY SINE Alu -11 300 1 610 317 117 0 chr3 19496236 19496536 -208028042 - L2 LINE L2 -97 3216 2882 654 172 94 56 chr3 19496536 19496716 -208027862 - MER53 DNA DNA -2 187 1 326 264 18 45 chr3 19497239 19497349 -208027229 + MIR SINE MIR 41 147 -61 289 336 29 0 chr3 19497837 19497941 -208026637 + MIR3 SINE MIR 88 194 -14 1516 199 2 114 chr3 19498023 19498195 -208026383 + MLT1A1 LTR MaLR 1 105 -260 1604 155 36 4 chr3 19498195 19498500 -208026078 + AluJb SINE Alu 3 316 0 1516 199 2 114 chr3 19498500 19498735 -208025843 + MLT1A1 LTR MaLR 105 365 0 216 272 37 62 chr3 19499024 19499105 -208025473 - MIR SINE MIR -81 181 103 471 228 62 168 chr3 19499150 19499360 -208025218 - MER113 DNA MER1_type? -52 469 238 2154 97 0 0 chr3 19499360 19499638 -208024940 - AluSx SINE Alu -32 280 3 471 228 62 168 chr3 19499638 19499837 -208024741 - MER113 DNA MER1_type? -283 238 124 678 203 0 36 chr3 19499837 19499975 -208024603 + FLAM_A SINE Alu 1 133 0 471 228 62 168 chr3 19499975 19500081 -208024497 - MER113 DNA MER1_type? -397 124 8 334 294 1 0 chr3 19500092 19500177 -208024401 + MIR SINE MIR 64 148 -69 2369 84 0 3 chr3 19500237 19500548 -208024030 - AluY SINE Alu -1 310 1 262 271 12 0 chr3 19501074 19501159 -208023419 - L1MDa LINE L1 -3951 2589 2504 326 265 127 48 chr3 19501160 19501349 -208023229 - L1MDa LINE L1 -4056 2484 2281 258 345 55 12 chr3 19501427 19501592 -208022986 - MIR SINE MIR -22 240 69 229 333 93 20 chr3 19501919 19502069 -208022509 - L2 LINE L2 0 3272 3112 2380 71 0 3 chr3 19502128 19502437 -208022141 + AluSc SINE Alu 1 308 -1 475 297 53 42 chr3 19502813 19503007 -208021571 - L1MC/D LINE L1 -456 5665 5478 2044 110 24 7 chr3 19503022 19503345 -208021233 + AluSp SINE Alu 1 313 0 379 322 30 35 chr3 19503350 19503552 -208021026 - L2 LINE L2 -166 3106 2906 273 369 33 0 chr3 19503723 19503845 -208020733 + MIR SINE MIR 18 143 -65 2520 196 111 6 chr3 19504101 19504606 -208019972 + LTR64 LTR ERVK 1 558 0 617 323 25 39 chr3 19504989 19505268 -208019310 + MER31-int LTR ERV1 349 623 -6135 1627 98 125 68 chr3 19505319 19505614 -208018964 - AluSx SINE Alu 0 312 1 1495 184 47 0 chr3 19505625 19505781 -208018797 - AluJb SINE Alu -21 291 115 198 0 0 0 chr3 19505781 19505803 -208018775 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1495 184 47 0 chr3 19505803 19505924 -208018654 - AluJb SINE Alu -197 115 1 472 241 225 8 chr3 19506154 19506407 -208018171 + MER31-int LTR ERV1 2820 3127 -1809 * 645 227 128 50 chr3 19506394 19506651 -208017927 + MER31-int LTR ERV1 2963 3251 -1685 1759 171 0 10 chr3 19506651 19506949 -208017629 + AluJb SINE Alu 5 299 -13 645 227 128 50 chr3 19506949 19507012 -208017566 + MER31-int LTR ERV1 3251 3308 -1628 2295 175 157 22 chr3 19507438 19507885 -208016693 + LTR64 LTR ERVK 1 521 -37 2203 88 3 0 chr3 19507885 19508179 -208016399 + AluSp SINE Alu 1 295 -18 2295 175 157 22 chr3 19508179 19508223 -208016355 + LTR64 LTR ERVK 521 558 0 271 256 0 49 chr3 19508509 19508591 -208015987 + MLT1H LTR MaLR 127 204 -345 225 220 17 17 chr3 19508791 19508850 -208015728 - Charlie8 DNA MER1_type -2277 140 82 303 172 0 0 chr3 19509233 19509291 -208015287 - L1ME LINE L1 -679 5485 5428 * 1282 198 45 44 chr3 19509290 19509790 -208014788 - L1MB8 LINE L1 0 6178 5680 2173 84 0 7 chr3 19509790 19510103 -208014475 - AluSg SINE Alu 0 311 1 1282 198 45 44 chr3 19510103 19510515 -208014063 - L1MB8 LINE L1 -498 5680 5092 2379 210 36 16 chr3 19510520 19511251 -208013327 - L1ME LINE L1 -738 5436 4693 261 257 57 38 chr3 19511299 19511404 -208013174 - MER20B DNA MER1_type -656 127 21 997 274 118 15 chr3 19511426 19511831 -208012747 + HAL1 LINE L1 1475 1921 -586 201 74 0 0 chr3 19512183 19512210 -208012368 + (GGGAA)n Simple_repeat Simple_repeat 1 27 0 1093 225 61 13 chr3 19512228 19512539 -208012039 - LTR16A LTR ERVL -15 435 110 565 295 82 10 chr3 19514474 19514681 -208009897 + L1M4 LINE L1 2945 3166 -2980 969 119 0 0 chr3 19514936 19515079 -208009499 - FLAM_C SINE Alu 0 143 1 2137 81 9 43 chr3 19515100 19515422 -208009156 - AluY SINE Alu 0 311 1 1754 107 103 34 chr3 19515479 19515770 -208008808 - AluSx SINE Alu 0 312 2 610 239 101 0 chr3 19515902 19516090 -208008488 + MIR SINE MIR 22 228 -34 228 241 69 0 chr3 19517157 19517244 -208007334 - MLT1I LTR MaLR -248 161 69 221 245 206 29 chr3 19517376 19517478 -208007100 - MIR SINE MIR -67 141 22 2395 59 0 0 chr3 19517577 19517867 -208006711 + AluY SINE Alu 1 290 -21 221 0 0 33 chr3 19517870 19517900 -208006678 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 255 247 161 32 chr3 19520657 19520750 -208003828 + MER91C DNA MER1_type 2 106 -34 2285 93 0 0 chr3 19522476 19522776 -208001802 + AluY SINE Alu 1 300 -11 1982 86 19 0 chr3 19522776 19523031 -208001547 + AluY SINE Alu 36 296 -15 206 241 46 81 chr3 19523263 19523350 -208001228 - MIR3 SINE MIR -34 174 91 181 296 28 56 chr3 19523456 19523564 -208001014 - L2 LINE L2 -97 3216 3112 22 56 0 0 chr3 19523572 19523608 -208000970 + AT_rich Low_complexity Low_complexity 1 36 0 276 289 33 79 chr3 19524023 19524175 -208000403 + L2 LINE L2 2970 3114 -158 259 286 143 25 chr3 19525649 19525768 -207998810 - MIR SINE MIR -111 151 19 600 339 120 0 chr3 19526950 19527183 -207997395 - MIR SINE MIR 0 262 2 206 352 106 14 chr3 19527660 19527802 -207996776 - MIR3 SINE MIR -24 184 30 510 244 79 50 chr3 19528470 19528773 -207995805 - MER113 DNA MER1_type? -209 312 1 625 285 29 5 chr3 19528993 19529200 -207995378 - MER58A DNA MER1_type -1 223 12 291 333 106 0 chr3 19529956 19530088 -207994490 + MIR SINE MIR 113 258 -4 261 294 144 20 chr3 19530369 19530515 -207994063 - MIR3 SINE MIR -25 183 20 305 214 48 24 chr3 19530725 19530809 -207993769 + MER74A LTR ERVL 411 496 -62 238 250 0 0 chr3 19531635 19531683 -207992895 + L2 LINE L2 3216 3263 -9 279 282 39 13 chr3 19532009 19532087 -207992491 + MIR SINE MIR 66 145 -63 329 271 225 0 chr3 19532253 19532404 -207992174 + MIR3 SINE MIR 3 187 -21 308 281 185 55 chr3 19533512 19533804 -207990774 + L2 LINE L2 2938 3267 -5 354 200 74 11 chr3 19534009 19534104 -207990474 - MER5A DNA MER1_type -80 109 9 259 169 7 24 chr3 19534701 19534850 -207989728 + AluJo SINE Alu 82 283 -19 221 326 37 4 chr3 19536630 19536744 -207987834 - MIR SINE MIR -72 136 36 1683 127 19 8 chr3 19536836 19537104 -207987474 + AluSg SINE Alu 21 291 -19 308 209 35 0 chr3 19537185 19537271 -207987307 - L1MB3 LINE L1 -1 6182 6094 238 250 0 0 chr3 19537947 19537995 -207986583 + L2 LINE L2 3216 3263 -9 279 282 39 13 chr3 19538321 19538399 -207986179 + MIR SINE MIR 66 145 -63 1990 172 16 19 chr3 19538972 19539338 -207985240 - MLT1A1 LTR MaLR 0 365 1 379 343 33 29 chr3 19540423 19540633 -207983945 - L3 LINE CR1 -28 1549 1339 2292 76 3 16 chr3 19540878 19541181 -207983397 - AluSp SINE Alu -14 299 1 182 350 41 10 chr3 19541675 19541772 -207982806 - L2 LINE L2 -175 3138 3039 543 297 28 10 chr3 19541799 19542176 -207982402 + LTR16C LTR ERVL 40 491 0 248 327 40 10 chr3 19542176 19542277 -207982301 - L2 LINE L2 -239 3033 2930 354 309 103 30 chr3 19542317 19542792 -207981786 + L1M4 LINE L1 3498 4007 -2139 256 103 0 0 chr3 19543274 19543313 -207981265 - L1ME3 LINE L1 -8 6154 6116 447 328 65 15 chr3 19543501 19543702 -207980876 + MIR SINE MIR 25 235 -27 435 102 0 0 chr3 19544283 19544342 -207980236 - Alu SINE Alu -259 59 1 287 388 27 13 chr3 19544381 19544605 -207979973 - L2 LINE L2 -377 2937 2711 624 299 81 42 chr3 19545177 19545512 -207979066 - L2 LINE L2 -8 3305 2958 270 293 48 32 chr3 19545634 19545822 -207978756 - L1M4 LINE L1 -3432 2714 2524 * 948 248 30 87 chr3 19545811 19545889 -207978689 + L1M4 LINE L1 3347 3428 -2718 2316 73 0 10 chr3 19545889 19546190 -207978388 + AluY SINE Alu 1 298 -13 948 248 30 87 chr3 19546190 19546410 -207978168 + L1M4 LINE L1 3428 3659 -2487 860 165 0 0 chr3 19546410 19546543 -207978035 - FLAM_A SINE Alu 0 133 1 948 248 30 87 chr3 19546543 19546704 -207977874 + L1M4 LINE L1 3659 3780 -2366 2165 150 0 0 chr3 19546704 19547011 -207977567 + AluSx SINE Alu 1 307 -5 948 248 30 87 chr3 19547011 19547045 -207977533 + L1M4 LINE L1 3780 3814 -2332 233 280 72 48 chr3 19547151 19547276 -207977302 + MIR SINE MIR 65 192 -70 373 272 24 59 chr3 19548074 19548243 -207976335 + MIR3 SINE MIR 2 164 -44 229 274 69 29 chr3 19549176 19549278 -207975300 + LTR33 LTR ERVL 105 210 -311 370 259 259 5 chr3 19549345 19549565 -207975013 + LTR33A LTR ERVL 228 503 -20 554 139 0 0 chr3 19549668 19549754 -207974824 - AluSg1 SINE Alu -223 86 1 182 274 0 20 chr3 19549763 19549814 -207974764 - MER5B DNA MER1_type -123 55 6 610 216 36 30 chr3 19549874 19550041 -207974537 - LTR38 LTR ERV1 -386 170 3 183 328 60 26 chr3 19550131 19550247 -207974331 + L2 LINE L2 3054 3173 -99 343 264 39 77 chr3 19550347 19550529 -207974049 + MIR SINE MIR 88 262 0 540 245 49 22 chr3 19550609 19550793 -207973785 - L1ME2 LINE L1 -102 6062 5874 570 243 0 40 chr3 19550793 19550941 -207973637 + FRAM SINE Alu 1 135 -41 416 212 73 36 chr3 19551104 19551241 -207973337 - L1M3 LINE L1 -594 5577 5436 1938 123 0 40 chr3 19551270 19551594 -207972984 - AluSx SINE Alu -1 311 1 1038 202 111 0 chr3 19551670 19551913 -207972665 + LTR48B LTR ERV1 1 270 -374 4082 96 9 4 chr3 19551924 19552475 -207972103 - MER41A LTR ERV1 0 554 1 657 157 45 8 chr3 19552483 19552599 -207971979 - MER41A LTR ERV1 0 554 434 339 146 0 0 chr3 19552599 19552654 -207971924 + Alu SINE Alu 1 55 -245 180 378 61 0 chr3 19552858 19552940 -207971638 + MIR SINE MIR 127 213 -49 * 247 240 130 30 chr3 19552912 19553012 -207971566 - MIR SINE MIR -2 260 151 373 224 28 101 chr3 19555245 19555311 -207969267 + L1M4 LINE L1 4642 4711 -1435 2253 97 0 0 chr3 19555311 19555611 -207968967 + AluSg SINE Alu 1 300 -10 373 224 28 101 chr3 19555611 19555723 -207968855 + L1M4 LINE L1 4711 4807 -1339 2106 115 0 13 chr3 19555735 19556047 -207968531 + AluSx SINE Alu 5 312 0 2028 93 4 4 chr3 19556283 19556561 -207968017 + AluSq SINE Alu 1 278 -35 369 43 0 0 chr3 19556564 19556611 -207967967 + (CA)n Simple_repeat Simple_repeat 1 47 0 675 103 0 10 chr3 19556612 19556709 -207967869 + AluS SINE Alu 1 96 -217 247 236 42 28 chr3 19557202 19557274 -207967304 - MIR SINE MIR -72 190 118 * 340 321 45 0 chr3 19557265 19557377 -207967201 + MIR SINE MIR 30 146 -62 2226 113 0 0 chr3 19557382 19557684 -207966894 + AluSx SINE Alu 1 302 -10 393 233 0 44 chr3 19557694 19557808 -207966770 + L1MC4 LINE L1 1995 6983 -1339 3230 62 0 0 chr3 19557814 19558250 -207966328 + HUERS-P1 LTR ERV1 5182 5617 -646 1690 78 9 0 chr3 19558386 19558604 -207965974 - AluSx SINE Alu -92 220 1 313 81 0 3 chr3 19558605 19558663 -207965915 - L1M LINE L1 -736 5428 5372 2137 88 0 7 chr3 19558664 19558960 -207965618 - AluY SINE Alu -17 294 1 344 206 35 136 chr3 19559259 19559420 -207965158 + MIR SINE MIR 18 160 -62 229 254 162 0 chr3 19560218 19560311 -207964267 - MIR SINE MIR -69 139 31 1061 180 76 0 chr3 19560538 19560788 -207963790 - L1M3 LINE L1 -359 5824 5556 2227 82 0 41 chr3 19560789 19561107 -207963471 - AluSp SINE Alu -8 305 1 678 183 58 47 chr3 19561108 19561299 -207963279 - Charlie1 DNA MER1_type -572 2189 1997 527 128 0 0 chr3 19561318 19561396 -207963182 - AluJo SINE Alu -8 304 227 968 124 85 13 chr3 19561396 19561549 -207963029 - AluJo SINE Alu -148 164 1 1679 144 3 56 chr3 19561613 19561918 -207962660 + AluJo SINE Alu 1 289 -23 2145 95 28 0 chr3 19561938 19562223 -207962355 + AluSc SINE Alu 1 293 -16 425 260 90 0 chr3 19563143 19563343 -207961235 - L1M4 LINE L1 -2085 4061 3844 2258 107 7 3 chr3 19563345 19563645 -207960933 - AluSg SINE Alu -9 301 1 431 288 71 43 chr3 19563677 19563861 -207960717 + L1ME4a LINE L1 5926 6114 -7 2265 101 7 0 chr3 19563933 19564230 -207960348 + AluSx SINE Alu 1 299 -13 276 263 81 0 chr3 19564326 19564425 -207960153 + L2 LINE L2 3180 3286 -27 442 221 76 15 chr3 19564519 19564650 -207959928 + LTR16A1 LTR ERVL 190 328 -129 1393 94 0 0 chr3 19564750 19564921 -207959657 + AluSq SINE Alu 130 300 -13 189 0 0 0 chr3 19564992 19565013 -207959565 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1816 106 136 0 chr3 19565117 19565390 -207959188 - AluSx SINE Alu -2 310 1 2432 92 0 0 chr3 19565395 19565700 -207958878 - AluY SINE Alu -6 305 1 39 0 0 0 chr3 19565762 19565801 -207958777 + AT_rich Low_complexity Low_complexity 1 39 0 1434 139 14 89 chr3 19565826 19565975 -207958603 - AluJo SINE Alu -44 268 109 2169 96 18 3 chr3 19565975 19566257 -207958321 + AluSq SINE Alu 1 286 -27 261 0 0 0 chr3 19566257 19566286 -207958292 + (CCA)n Simple_repeat Simple_repeat 1 29 0 1434 139 14 89 chr3 19566286 19566297 -207958281 - AluJo SINE Alu -202 110 100 2249 96 0 0 chr3 19566297 19566578 -207958000 + AluSg SINE Alu 1 281 -29 1965 88 12 0 chr3 19566578 19566827 -207957751 + AluSq SINE Alu 43 294 -19 1434 139 14 89 chr3 19566827 19566944 -207957634 - AluJo SINE Alu -210 102 9 274 157 14 14 chr3 19567826 19567896 -207956682 + (CA)n Simple_repeat Simple_repeat 1 70 0 227 335 0 0 chr3 19567987 19568084 -207956494 + MIR SINE MIR 63 160 -48 482 274 178 67 chr3 19568110 19568486 -207956092 + Charlie8 DNA MER1_type 29 446 -1971 1484 122 0 0 chr3 19569233 19569430 -207955148 + AluSg/x SINE Alu 79 275 -37 2417 97 0 7 chr3 19569736 19570045 -207954533 + AluY SINE Alu 1 307 -4 785 238 144 81 chr3 19570212 19570571 -207954007 - MLT1H LTR MaLR 0 549 151 3003 108 101 41 chr3 19570571 19571014 -207953564 - MER4A LTR ERV1 -4 596 109 2222 119 0 0 chr3 19571014 19571332 -207953246 + AluSx SINE Alu 1 318 0 3003 108 101 41 chr3 19571332 19571448 -207953130 - MER4A LTR ERV1 -491 109 1 785 238 144 81 chr3 19571448 19571559 -207953019 - MLT1H LTR MaLR -398 151 49 865 167 17 11 chr3 19571559 19571733 -207952845 + L1M3 LINE L1 5411 5585 -598 1902 121 40 4 chr3 19571858 19572130 -207952448 - AluSg SINE Alu -28 282 1 2346 101 7 0 chr3 19572217 19572515 -207952063 - AluSx SINE Alu -12 300 1 718 288 22 18 chr3 19572608 19572882 -207951696 + L1ME LINE L1 5296 5570 -594 2066 139 30 0 chr3 19572897 19573200 -207951378 - AluSq SINE Alu -1 312 1 265 382 7 21 chr3 19573624 19573768 -207950810 - MIR3 SINE MIR -25 183 42 357 252 29 10 chr3 19574082 19574185 -207950393 + MIR SINE MIR 21 125 -83 821 153 32 32 chr3 19574217 19574406 -207950172 + MER53 DNA DNA 1 189 0 471 241 25 16 chr3 19574446 19574597 -207949981 + MIR3 SINE MIR 3 153 -79 1778 128 69 11 chr3 19574652 19574926 -207949652 + AluJb SINE Alu 1 290 -22 246 203 368 15 chr3 19575558 19575691 -207948887 + MLT1K LTR MaLR 387 566 -22 297 250 10 42 chr3 19576461 19576557 -207948021 + MIR SINE MIR 109 201 -61 664 88 0 0 chr3 19576763 19576854 -207947724 - AluS SINE Alu -221 92 2 1098 236 56 25 chr3 19576887 19576944 -207947634 + MER97c DNA MER1_type? 204 258 -832 1802 175 13 10 chr3 19576944 19577252 -207947326 - AluJo SINE Alu -3 309 1 1098 236 56 25 chr3 19577252 19577550 -207947028 + MER97c DNA MER1_type? 258 570 -520 451 226 77 36 chr3 19577562 19577810 -207946768 + MER97c DNA MER1_type? 830 1087 -3 210 128 0 0 chr3 19578059 19578098 -207946480 + (TG)n Simple_repeat Simple_repeat 1 39 0 2097 182 24 73 chr3 19578106 19578598 -207945980 - MLT2B2 LTR ERVL -38 447 3 797 195 19 61 chr3 19579334 19579596 -207944982 + L1MC5 LINE L1 7473 7723 -238 2546 116 24 53 chr3 19579731 19580161 -207944417 + L1MB3 LINE L1 5705 6146 -37 2141 103 0 60 chr3 19580161 19580480 -207944098 + AluSq SINE Alu 1 300 -13 948 211 0 0 chr3 19580489 19580660 -207943918 + FAM SINE Alu 1 171 -4 2546 116 24 53 chr3 19580660 19580710 -207943868 + L1MB3 LINE L1 6154 6181 -2 498 256 52 6 chr3 19580713 19580885 -207943693 + L1M4 LINE L1 2835 3014 -3132 1372 207 21 153 chr3 19580889 19581314 -207943264 + MLT2B1 LTR ERVL 5 373 -41 1538 180 55 3 chr3 19581344 19581633 -207942945 - MER7A DNA MER2_type -43 303 2 328 93 17 2 chr3 19581633 19581690 -207942888 + MLT2C2 LTR ERVL 415 464 0 301 328 132 49 chr3 19581847 19582051 -207942527 + L3 LINE CR1 1263 1483 -94 2032 142 3 3 chr3 19582129 19582425 -207942153 + AluSq SINE Alu 1 296 -17 676 196 0 8 chr3 19582808 19582941 -207941637 + AluJo/FLAM SINE Alu 2 133 -179 1972 112 0 4 chr3 19582944 19583203 -207941375 + AluSx SINE Alu 1 258 -54 233 315 0 0 chr3 19583220 19583293 -207941285 - L1M2 LINE L1 -754 5537 5465 550 245 0 14 chr3 19583904 19584047 -207940531 - MIR SINE MIR -113 149 9 293 223 122 74 chr3 19584865 19585013 -207939565 + MER45C DNA AcHobo 541 695 -258 2945 167 44 34 chr3 19585380 19585526 -207939052 + L1MB3 LINE L1 5465 5608 -575 2375 103 0 3 chr3 19585526 19585828 -207938750 + AluSq SINE Alu 1 301 -12 2945 167 44 34 chr3 19585828 19586130 -207938448 + L1MB3 LINE L1 5608 5925 -258 2512 91 0 0 chr3 19586130 19586437 -207938141 - AluSg SINE Alu -3 307 1 2945 167 44 34 chr3 19586437 19586663 -207937915 + L1MB3 LINE L1 5925 6147 -36 304 86 0 86 chr3 19586656 19586714 -207937864 + L1MA9 LINE L1 5995 6047 -244 * 960 206 6 0 chr3 19586910 19587080 -207937498 - AluJb SINE Alu -5 307 137 1485 148 86 52 chr3 19587523 19587814 -207936764 - AluJo SINE Alu -9 303 3 1822 166 3 13 chr3 19590940 19591241 -207933337 + AluJo SINE Alu 5 302 -10 2125 116 7 3 chr3 19591241 19591535 -207933043 + AluSp SINE Alu 1 295 -18 425 286 83 29 chr3 19593101 19593307 -207931271 + Charlie2a DNA MER1_type 734 927 -1935 2074 106 7 30 chr3 19593307 19593610 -207930968 - AluSg SINE Alu -14 296 1 425 286 83 29 chr3 19593610 19593631 -207930947 + Charlie2a DNA MER1_type 927 945 -1917 2250 81 9 43 chr3 19593631 19593953 -207930625 - AluY SINE Alu 0 311 1 425 286 83 29 chr3 19593953 19593965 -207930613 + Charlie2a DNA MER1_type 945 987 -1875 342 121 229 12 chr3 19594030 19594113 -207930465 - AluSc SINE Alu 0 299 199 286 277 78 21 chr3 19594315 19594456 -207930122 + L1MC4a LINE L1 5845 5993 -1815 1673 164 53 27 chr3 19596600 19596899 -207927679 + AluJo SINE Alu 1 307 -5 195 346 24 44 chr3 19597353 19597558 -207927020 + L2 LINE L2 2921 3121 -151 293 223 122 74 chr3 19597910 19598058 -207926520 + MER45C DNA AcHobo 541 695 -258 257 246 16 0 chr3 19598056 19598117 -207926461 + MER45C DNA AcHobo 892 953 0 * 272 194 65 0 chr3 19598418 19598480 -207926098 - MIR SINE MIR -73 189 124 364 275 37 0 chr3 19598869 19598978 -207925600 + L3 LINE CR1 1356 1468 -109 338 353 46 7 chr3 19600029 19600205 -207924373 + MIR SINE MIR 3 183 -72 236 396 58 7 chr3 19600844 19600998 -207923580 - MIR SINE MIR -53 209 48 748 312 83 10 chr3 19601357 19601767 -207922811 - L1MC4 LINE L1 -155 7887 7448 332 317 29 18 chr3 19602054 19602262 -207922316 + MIR SINE MIR 22 230 -32 200 322 0 0 chr3 19602925 19602984 -207921594 - MER5A DNA MER1_type -95 94 36 548 115 0 11 chr3 19603178 19603265 -207921313 + AluSg/x SINE Alu 208 293 -16 182 360 137 7 chr3 19603463 19603616 -207920962 + MIR SINE MIR 77 249 -13 1045 228 22 33 chr3 19603616 19603892 -207920686 - MLT1A1 LTR MaLR -92 273 1 1187 241 71 38 chr3 19604271 19604301 -207920277 + L1M4 LINE L1 3473 3501 -2645 2200 134 0 0 chr3 19604301 19604599 -207919979 - AluSg SINE Alu -12 298 1 1187 241 71 38 chr3 19604599 19604992 -207919586 + L1M4 LINE L1 3501 3910 -2236 435 323 112 28 chr3 19605033 19605318 -207919260 + L2 LINE L2 3005 3313 0 360 220 187 0 chr3 19605767 19605888 -207918690 - FRAM/FAM SINE Alu -82 84 1 416 273 0 0 chr3 19605994 19606093 -207918485 - MIR SINE MIR -101 161 63 260 297 20 0 chr3 19606966 19607067 -207917511 + MER113 DNA MER1_type? 14 116 -405 379 221 11 11 chr3 19607269 19607364 -207917214 + MIR SINE MIR 32 126 -136 306 127 0 18 chr3 19607485 19607540 -207917038 - MLT2B2 LTR ERVL -3 512 459 1242 218 122 33 chr3 19607619 19608045 -207916533 - MLT2B2 LTR ERVL -51 464 1 234 299 134 0 chr3 19608485 19608582 -207915996 + MIR3 SINE MIR 82 191 -17 1673 161 27 65 chr3 19609558 19609925 -207914653 + MLT1A1 LTR MaLR 12 364 -1 1111 280 34 9 chr3 19610047 19610372 -207914206 + L1MC1 LINE L1 6000 6332 -1 1678 181 13 26 chr3 19610883 19611192 -207913386 - AluJo SINE Alu -6 306 2 286 145 0 32 chr3 19611194 19611256 -207913322 - L1MC2 LINE L1 -13 6331 6272 245 258 93 0 chr3 19611258 19611355 -207913223 - L1MD3 LINE L1 -218 7777 7672 2305 102 0 3 chr3 19611825 19612129 -207912449 - AluSx SINE Alu -9 303 1 3439 45 6 57 chr3 19612749 19612790 -207911788 + HUERS-P1 LTR ERV1 5798 5840 -423 2190 128 3 0 chr3 19612790 19613074 -207911504 + AluSx SINE Alu 1 288 -24 210 37 0 0 chr3 19613074 19613101 -207911477 + (CA)n Simple_repeat Simple_repeat 2 28 0 2190 128 3 0 chr3 19613101 19613112 -207911466 + AluSx SINE Alu 288 297 -15 3439 45 6 57 chr3 19613112 19613561 -207911017 + HUERS-P1 LTR ERV1 5840 6263 0 2177 42 76 0 chr3 19613561 19613849 -207910729 + LTR8 LTR ERV1 1 310 -381 465 250 25 0 chr3 19613982 19614102 -207910476 - L2 LINE L2 -6 3266 3144 215 329 123 24 chr3 19614236 19614406 -207910172 + L3 LINE CR1 621 807 -770 1751 108 8 0 chr3 19615090 19615330 -207909248 - AluSx SINE Alu -70 242 1 313 81 0 3 chr3 19615331 19615389 -207909189 - L1M LINE L1 -734 5428 5372 1299 102 77 0 chr3 19615390 19615549 -207909029 - AluY SINE Alu -17 294 116 342 0 0 0 chr3 19615549 19615587 -207908991 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 1299 102 77 0 chr3 19615587 19615623 -207908955 - AluY SINE Alu -195 116 84 406 174 66 35 chr3 19615646 19615678 -207908900 - L1 LINE L1 -799 5347 5317 1591 183 3 29 chr3 19615678 19615984 -207908594 - AluJb SINE Alu -2 310 13 406 174 66 35 chr3 19615984 19616108 -207908470 - L1 LINE L1 -829 5317 5209 460 234 21 28 chr3 19616217 19616358 -207908220 - L1MC4 LINE L1 -455 7587 7448 359 381 30 26 chr3 19616645 19616876 -207907702 + MIR SINE MIR 22 253 -9 268 250 0 0 chr3 19617504 19617568 -207907010 + AluS SINE Alu 226 289 -12 248 0 0 30 chr3 19617575 19617608 -207906970 + (CAA)n Simple_repeat Simple_repeat 2 33 0 445 365 117 5 chr3 19618984 19619206 -207905372 + MIR SINE MIR 16 262 0 2122 124 0 0 chr3 19620091 19620389 -207904189 + AluSx SINE Alu 1 298 -14 1953 94 0 0 chr3 19620389 19620645 -207903933 + AluY SINE Alu 41 296 -15 1478 104 0 5 chr3 19620645 19620846 -207903732 + AluSg SINE Alu 2 201 -109 2484 57 0 10 chr3 19620846 19621160 -207903418 + AluY SINE Alu 1 311 0 382 221 24 24 chr3 19621296 19621423 -207903155 + L1MB3 LINE L1 5941 6067 -116 1436 135 27 84 chr3 19621571 19621867 -207902711 - AluJb SINE Alu -21 291 13 234 197 0 49 chr3 19623045 19623106 -207901472 - MER66A LTR ERV1 -379 99 42 347 213 135 46 chr3 19623134 19623288 -207901290 - L1ME LINE L1 -461 5701 5537 588 111 0 33 chr3 19623289 19623379 -207901199 + AluJ/FLAM SINE Alu 1 87 -225 762 204 79 5 chr3 19623380 19623596 -207900982 - L1ME LINE L1 -616 5548 5317 1679 135 0 121 chr3 19623599 19623803 -207900775 - AluJb SINE Alu -2 300 152 1955 127 14 3 chr3 19623803 19624095 -207900483 - AluSq SINE Alu -18 295 1 1679 135 0 121 chr3 19624095 19624230 -207900348 - AluJb SINE Alu -150 152 2 731 156 75 6 chr3 19624287 19624476 -207900102 - AluSp SINE Alu 0 318 119 260 246 0 0 chr3 19625113 19625170 -207899408 + LTR33A LTR ERVL 467 523 0 22 35 0 0 chr3 19625246 19625275 -207899303 + AT_rich Low_complexity Low_complexity 1 29 0 1475 159 82 0 chr3 19625431 19625676 -207898902 - AluJo SINE Alu -45 267 3 2489 161 4 28 chr3 19625680 19626188 -207898390 - L1M4 LINE L1 -362 5822 5327 1599 165 7 21 chr3 19626190 19626481 -207898097 - AluSx SINE Alu -13 299 13 386 320 115 0 chr3 19628119 19628275 -207896303 + MIR3 SINE MIR 24 197 -11 365 323 62 12 chr3 19630132 19630293 -207894285 - L3 LINE CR1 -529 1048 880 191 263 0 0 chr3 19630310 19630348 -207894230 + MIR SINE MIR 210 247 -15 355 368 61 36 chr3 19631396 19631673 -207892905 + L3 LINE CR1 1161 1444 -133 305 306 61 0 chr3 19632410 19632508 -207892070 + MER5A DNA MER1_type 1 104 -85 289 311 130 17 chr3 19633048 19633225 -207891353 - L3 LINE CR1 -50 1527 1331 191 291 73 0 chr3 19634176 19634231 -207890347 + L2 LINE L2 3250 3308 -5 221 415 10 35 chr3 19635341 19635541 -207889037 - MIR3 SINE MIR -13 195 1 732 136 0 0 chr3 19635836 19635946 -207888632 - FRAM SINE Alu -4 172 63 189 0 81 27 chr3 19636328 19636365 -207888213 + A-rich Low_complexity Low_complexity 2 40 0 345 319 58 30 chr3 19636389 19636717 -207887861 + L2 LINE L2 2709 3049 -223 396 271 101 25 chr3 19637055 19637222 -207887356 - MIR3 SINE MIR -49 159 1 394 285 101 7 chr3 19638559 19638707 -207885871 - MIR3 SINE MIR -49 159 19 254 300 0 0 chr3 19640514 19640574 -207884004 + L2 LINE L2 3228 3287 -26 612 291 19 43 chr3 19641455 19641665 -207882913 - L3 LINE CR1 -2 1575 1371 336 252 27 0 chr3 19642209 19642320 -207882258 + Charlie8 DNA MER1_type 93 206 -2211 3614 238 80 76 chr3 19642374 19643474 -207881104 + L1M4b LINE L1 95 1189 -5666 180 77 0 0 chr3 19643474 19643500 -207881078 + (TG)n Simple_repeat Simple_repeat 2 27 0 3614 238 80 76 chr3 19643500 19643738 -207880840 + L1M4b LINE L1 1189 1425 -5430 452 0 52 0 chr3 19643738 19643796 -207880782 + (CAAAA)n Simple_repeat Simple_repeat 2 62 0 3614 238 80 76 chr3 19643796 19643990 -207880588 + L1M4b LINE L1 1425 1627 -5228 2342 68 3 19 chr3 19643990 19644298 -207880280 - AluY SINE Alu -8 303 1 3614 238 80 76 chr3 19644298 19644406 -207880172 + L1M4b LINE L1 1627 1733 -5122 1436 135 27 84 chr3 19644790 19645086 -207879492 - AluJb SINE Alu -21 291 13 752 220 28 16 chr3 19647639 19647821 -207876757 + MER20 DNA MER1_type 30 213 -6 229 254 162 0 chr3 19648314 19648407 -207876171 + MIR SINE MIR 31 139 -69 519 311 18 31 chr3 19648651 19648876 -207875702 + MLT1I LTR MaLR 184 405 -4 326 212 35 136 chr3 19649205 19649366 -207875212 - MIR SINE MIR -62 146 18 2442 74 0 0 chr3 19649665 19649964 -207874614 + AluSg SINE Alu 1 299 -11 193 253 13 63 chr3 19650479 19650558 -207874020 - L2 LINE L2 -1 3271 3197 287 359 167 0 chr3 19650588 19650839 -207873739 + L2 LINE L2 3019 3311 -2 227 331 71 16 chr3 19651284 19651411 -207873167 + MIR SINE MIR 60 193 -69 247 333 0 0 chr3 19651778 19651841 -207872737 + MIR SINE MIR 110 172 -90 253 222 68 60 chr3 19652845 19652962 -207871616 - Charlie8 DNA MER1_type -1940 477 360 257 281 50 62 chr3 19653067 19653227 -207871351 + Charlie8 DNA MER1_type 25 182 -2235 374 339 0 16 chr3 19653388 19653509 -207871069 + MIR SINE MIR 81 199 -63 357 301 88 18 chr3 19654005 19654231 -207870347 + L1ME LINE L1 5520 5761 -360 304 193 0 0 chr3 19654525 19654582 -207869996 + L2 LINE L2 3211 3267 -5 814 193 51 6 chr3 19655537 19655713 -207868865 - MLT1A1 LTR MaLR -180 185 2 807 172 32 6 chr3 19655713 19655868 -207868710 + MLT1A1 LTR MaLR 206 364 -1 376 263 128 13 chr3 19656314 19656470 -207868108 + MIR SINE MIR 77 250 -12 218 347 157 0 chr3 19656502 19656623 -207867955 - MIR SINE MIR -109 153 14 290 317 129 29 chr3 19657380 19657620 -207866958 + L2 LINE L2 3050 3313 0 246 241 12 84 chr3 19657755 19657838 -207866740 - L2 LINE L2 -3 3269 3193 2252 106 3 0 chr3 19657851 19658162 -207866416 + AluSp SINE Alu 2 313 0 483 325 13 0 chr3 19658511 19658662 -207865916 - MIR SINE MIR -1 261 109 2102 124 0 10 chr3 19659435 19659733 -207864845 - AluSx SINE Alu -15 297 3 478 253 19 32 chr3 19659832 19659990 -207864588 - AluSg/x SINE Alu -23 289 134 532 313 10 10 chr3 19660316 19660508 -207864070 - AluY SINE Alu -119 192 1 22 0 0 0 chr3 19660511 19660533 -207864045 + AT_rich Low_complexity Low_complexity 1 22 0 2309 93 0 3 chr3 19660534 19660834 -207863744 + AluSp SINE Alu 1 299 -14 1965 118 14 7 chr3 19660846 19661143 -207863435 + AluSp SINE Alu 1 299 -14 1233 313 65 28 chr3 19661154 19661758 -207862820 - L1ME3A LINE L1 -50 6120 5495 1693 180 0 7 chr3 19661769 19662069 -207862509 - AluJb SINE Alu -14 298 1 4048 218 24 8 chr3 19662101 19663481 -207861097 - L1MB3 LINE L1 -7 6176 4772 344 299 123 8 chr3 19664036 19664198 -207860380 - MIR SINE MIR -63 145 20 224 289 31 31 chr3 19664501 19664598 -207859980 + L2 LINE L2 2661 2757 -557 468 321 53 5 chr3 19664868 19665058 -207859520 + MIR SINE MIR 14 212 -50 219 294 29 0 chr3 19665289 19665357 -207859221 - MIR SINE MIR -65 143 74 430 293 58 10 chr3 19665882 19666090 -207858488 - L2 LINE L2 -260 3053 2836 199 355 153 0 chr3 19666153 19666342 -207858236 - L2 LINE L2 -619 2695 2478 268 265 36 0 chr3 19667095 19667178 -207857400 - HAL1 LINE L1 -1155 1352 1267 364 240 40 34 chr3 19667700 19667927 -207856651 + (CTCA)n Simple_repeat Simple_repeat 1 228 0 340 319 6 6 chr3 19667935 19668101 -207856477 + (CA)n Simple_repeat Simple_repeat 1 166 0 782 161 0 29 chr3 19668817 19668986 -207855592 - FLAM_C SINE Alu 0 165 1 271 336 22 22 chr3 19669520 19669654 -207854924 - MIR SINE MIR -50 212 79 283 359 70 6 chr3 19674111 19674282 -207850296 - MIR SINE MIR -62 146 11 805 169 131 0 chr3 19674603 19674763 -207849815 + MER5A DNA MER1_type 5 185 -4 183 80 0 0 chr3 19675092 19675117 -207849461 + (TTTTC)n Simple_repeat Simple_repeat 3 27 0 782 205 122 0 chr3 19675117 19675273 -207849305 - FAM SINE Alu 0 175 1 224 331 120 23 chr3 19675804 19675979 -207848599 - L3 LINE CR1 -765 812 621 493 231 25 0 chr3 19676113 19676234 -207848344 + L2 LINE L2 3144 3267 -5 1489 201 7 7 chr3 19676562 19676851 -207847727 + AluJb SINE Alu 1 289 -23 2303 70 3 26 chr3 19677213 19677525 -207847053 - AluSc SINE Alu -4 305 1 2301 78 7 0 chr3 19677663 19677959 -207846619 - AluSg SINE Alu -12 298 1 308 197 15 15 chr3 19678086 19678152 -207846426 + MIR SINE MIR 112 177 -85 611 167 0 65 chr3 19678163 19678301 -207846277 + FLAM_A SINE Alu 13 141 -1 219 266 76 0 chr3 19679252 19679331 -207845247 - MIR SINE MIR -75 133 49 2982 153 20 43 chr3 19679373 19679929 -207844649 + L1MB3 LINE L1 5640 6182 -1 655 299 56 23 chr3 19680647 19680951 -207843627 + LTR37A LTR ERV1 34 347 -79 1672 165 16 13 chr3 19682513 19682634 -207841944 + AluJb SINE Alu 1 120 -192 207 0 0 0 chr3 19682634 19682657 -207841921 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1672 165 16 13 chr3 19682657 19682844 -207841734 + AluJb SINE Alu 120 310 -2 773 258 74 37 chr3 19682906 19683313 -207841265 - MER113 DNA MER1_type? -99 422 1 2028 123 13 0 chr3 19683678 19683978 -207840600 - AluSq SINE Alu -9 304 1 1162 185 65 17 chr3 19684106 19684398 -207840180 - L1MD1 LINE L1 -12 6230 5925 26 0 0 0 chr3 19684704 19684730 -207839848 + GC_rich Low_complexity Low_complexity 1 26 0 1536 131 72 56 chr3 19685781 19685945 -207838633 - AluSx SINE Alu -1 311 151 207 0 0 0 chr3 19685945 19685968 -207838610 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1536 131 72 56 chr3 19685968 19685983 -207838595 - AluSx SINE Alu -161 151 138 1474 71 5 5 chr3 19685983 19686179 -207838399 - AluSq SINE Alu -43 270 75 1536 131 72 56 chr3 19686179 19686304 -207838274 - AluSx SINE Alu -174 138 1 1099 91 0 0 chr3 19686305 19686448 -207838130 - AluSq/x SINE Alu -170 143 1 268 352 49 21 chr3 19687467 19687609 -207836969 - MIR3 SINE MIR -33 175 30 226 287 30 10 chr3 19688149 19688250 -207836328 - LTR16A1 LTR ERVL 0 457 355 2119 89 29 0 chr3 19689518 19689799 -207834779 - AluSc SINE Alu -16 293 5 246 337 132 26 chr3 19689813 19690199 -207834379 - L2 LINE L2 -31 3241 2815 240 297 137 33 chr3 19690783 19690886 -207833692 - MER113 DNA MER1_type? -96 425 334 1095 187 21 21 chr3 19690886 19691127 -207833451 - L1MB3 LINE L1 -2 6181 5941 240 297 137 33 chr3 19691127 19691205 -207833373 - MER113 DNA MER1_type? -187 334 225 812 119 0 0 chr3 19691267 19691385 -207833193 - AluY SINE Alu -4 307 190 225 32 32 0 chr3 19691526 19691557 -207833021 + L1MB3 LINE L1 5443 5474 -697 2034 130 0 3 chr3 19691568 19691893 -207832685 - AluSx SINE Alu 0 324 1 4005 132 28 28 chr3 19691934 19692584 -207831994 + L1MB3 LINE L1 5477 6126 -57 1954 114 0 58 chr3 19692584 19692909 -207831669 + AluSq SINE Alu 1 306 -7 969 222 0 0 chr3 19692912 19693083 -207831495 + FAM SINE Alu 1 171 -4 4005 132 28 28 chr3 19693083 19693133 -207831445 + L1MB3 LINE L1 6127 6181 -2 372 291 52 6 chr3 19693136 19693308 -207831270 + L1M4 LINE L1 2835 3014 -3132 484 178 19 9 chr3 19693312 19693419 -207831159 + MLT2B2 LTR ERVL 5 112 -403 228 336 77 0 chr3 19693590 19693694 -207830884 + L1MC/D LINE L1 5800 5911 -1897 2380 71 0 3 chr3 19693931 19694240 -207830338 - AluSc SINE Alu -1 308 1 182 347 93 20 chr3 19694299 19694449 -207830129 + L2 LINE L2 3112 3272 0 258 345 55 12 chr3 19694776 19694941 -207829637 + MIR SINE MIR 69 240 -22 392 252 0 9 chr3 19695431 19695538 -207829040 - L1M4 LINE L1 -1506 4640 4535 2170 100 3 17 chr3 19695542 19695842 -207828736 + AluSp SINE Alu 3 298 -15 5730 136 169 26 chr3 19695852 19696975 -207827603 + pTR5 LTR ERV1 742 2025 -413 420 224 10 0 chr3 19696975 19697073 -207827505 + LTR30 LTR ERV1 544 642 -80 1286 118 0 0 chr3 19697073 19697259 -207827319 + pTR5 LTR ERV1 66 251 -2187 253 275 28 35 chr3 19697361 19697503 -207827075 + MER66B LTR ERV1 305 445 -41 687 250 35 104 chr3 19697521 19697572 -207827006 + L1ME3 LINE L1 5713 5766 -396 2126 99 0 0 chr3 19697572 19697884 -207826694 + AluSg SINE Alu 1 310 0 687 250 35 104 chr3 19697884 19698015 -207826563 + L1ME3 LINE L1 5766 5904 -258 770 180 6 37 chr3 19698015 19698176 -207826402 - FRAM SINE Alu -10 156 1 687 250 35 104 chr3 19698176 19698368 -207826210 + L1ME3 LINE L1 5904 6062 -100 359 267 9 19 chr3 19698525 19698630 -207825948 - MIR SINE MIR -71 191 88 658 216 36 30 chr3 19698935 19699102 -207825476 + LTR38 LTR ERV1 3 170 -386 2057 107 17 0 chr3 19699222 19699513 -207825065 + AluSg SINE Alu 1 296 -14 2493 65 0 0 chr3 19699513 19699822 -207824756 + AluY SINE Alu 1 309 -2 2000 131 0 10 chr3 19700092 19700404 -207824174 + AluY SINE Alu 1 309 -2 894 121 0 0 chr3 19700542 19700666 -207823912 - AluSq/x SINE Alu -189 124 1 2406 72 3 0 chr3 19700677 19700981 -207823597 - AluSp SINE Alu -8 305 1 273 118 0 0 chr3 19700982 19701033 -207823545 - L1M4 LINE L1 -815 5331 5281 225 232 54 0 chr3 19701049 19701105 -207823473 + MIR SINE MIR 186 244 -18 434 271 46 7 chr3 19701108 19701259 -207823319 - MER112 DNA MER1_type -102 158 2 786 251 71 10 chr3 19701327 19701607 -207822971 + MER46C DNA MER2_type 1 298 -40 1147 232 74 20 chr3 19701607 19701944 -207822634 - LTR48B LTR ERV1 0 644 289 1071 74 7 0 chr3 19701944 19702092 -207822486 + MER41B LTR ERV1 1 149 -486 2559 83 6 14 chr3 19702092 19702453 -207822125 - LTR8 LTR ERV1 0 691 334 31 26 0 0 chr3 19703001 19703039 -207821539 + GC_rich Low_complexity Low_complexity 1 38 0 237 221 29 29 chr3 19703190 19703294 -207821284 + C-rich Low_complexity Low_complexity 5 108 0 23 54 0 0 chr3 19703311 19703348 -207821230 + GC_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 19703441 19703463 -207821115 + GC_rich Low_complexity Low_complexity 1 22 0 321 310 9 0 chr3 19704956 19705069 -207819509 + MIR SINE MIR 36 149 -113 237 224 0 0 chr3 19705706 19705755 -207818823 + L1M2 LINE L1 5489 5537 -763 1929 105 0 0 chr3 19705772 19706030 -207818548 - AluSx SINE Alu -54 258 1 978 188 96 8 chr3 19706031 19706271 -207818307 - L1MB7 LINE L1 -354 5830 5570 870 194 46 25 chr3 19706514 19706710 -207817868 + MER20 DNA MER1_type 20 219 0 2035 120 0 38 chr3 19706880 19707196 -207817382 + AluSq SINE Alu 1 304 -9 1763 147 38 10 chr3 19708572 19708864 -207815714 + AluSx SINE Alu 1 300 -12 374 197 0 0 chr3 19708964 19709035 -207815543 + AluSg/x SINE Alu 209 279 -21 261 0 0 0 chr3 19709036 19709065 -207815513 + (TA)n Simple_repeat Simple_repeat 2 30 0 1919 119 38 3 chr3 19709639 19709932 -207814646 - AluSg SINE Alu -7 303 1 2207 101 7 0 chr3 19710019 19710317 -207814261 - AluSx SINE Alu -12 300 1 739 288 22 18 chr3 19710410 19710684 -207813894 + L1ME LINE L1 5296 5570 -594 2071 141 0 0 chr3 19710699 19711011 -207813567 - AluSq SINE Alu -1 312 1 1124 202 111 0 chr3 19711087 19711330 -207813248 + LTR48B LTR ERV1 1 270 -374 2641 86 14 0 chr3 19711341 19711702 -207812876 - MER41A LTR ERV1 0 554 189 315 297 79 0 chr3 19761882 19761983 -207762595 + MIR SINE MIR 35 143 -65 333 297 162 0 chr3 19762146 19762294 -207762284 - MIR SINE MIR -15 247 76 275 259 232 38 chr3 19762837 19763169 -207761409 + L2 LINE L2 2859 3311 -2 248 276 69 26 chr3 19763682 19763798 -207760780 + MIR3 SINE MIR 71 191 -17 245 294 103 24 chr3 19764421 19764547 -207760031 + Charlie8 DNA MER1_type 21 156 -2261 365 304 65 24 chr3 19765415 19765583 -207758995 - MIR SINE MIR -7 255 81 1858 144 19 2 chr3 19765614 19766013 -207758565 + L1MC1 LINE L1 5186 5589 -745 886 268 0 9 chr3 19766013 19766237 -207758341 - AluJb SINE Alu 0 312 91 623 206 6 38 chr3 19766245 19766405 -207758173 + L1MC1 LINE L1 5882 6036 -297 546 269 11 11 chr3 19766549 19766731 -207757847 + L1MC1 LINE L1 5408 5589 -744 1543 130 0 0 chr3 19766732 19766955 -207757623 - AluJb SINE Alu 0 312 90 2732 144 31 14 chr3 19766962 19767406 -207757172 + L1MC1 LINE L1 5882 6333 0 324 316 118 66 chr3 19767435 19767707 -207756871 - L2 LINE L2 -94 3178 2893 259 311 0 0 chr3 19767885 19767988 -207756590 + (CGGGG)n Simple_repeat Simple_repeat 2 104 0 508 260 59 19 chr3 19768031 19768323 -207756255 + Charlie4a DNA MER1_type 25 386 -122 306 271 0 0 chr3 19768370 19768488 -207756090 + (CA)n Simple_repeat Simple_repeat 1 118 0 267 31 0 0 chr3 19768790 19768822 -207755756 + (TG)n Simple_repeat Simple_repeat 2 33 0 334 266 13 0 chr3 19769033 19769112 -207755466 - MIR SINE MIR -107 155 76 206 305 131 4 chr3 19769255 19769500 -207755078 + L2 LINE L2 2721 3021 -251 268 183 100 0 chr3 19769608 19769668 -207754910 + L2 LINE L2 3205 3270 -2 194 358 32 0 chr3 19770422 19770517 -207754061 + MIR SINE MIR 80 177 -85 624 319 109 28 chr3 19770840 19771555 -207753023 + L2 LINE L2 2413 3184 -129 205 229 42 0 chr3 19771624 19771672 -207752906 + MIR SINE MIR 88 137 -71 25 0 0 0 chr3 19772613 19772638 -207751940 + GC_rich Low_complexity Low_complexity 1 25 0 584 266 107 0 chr3 19773216 19773385 -207751193 + MIR SINE MIR 39 225 -37 240 254 30 0 chr3 19773624 19773691 -207750887 + MIR SINE MIR 76 144 -118 2035 214 91 14 chr3 19774127 19774425 -207750153 + L1MC3 LINE L1 7171 7445 -340 726 200 0 22 chr3 19774425 19774560 -207750018 + FLAM_C SINE Alu 2 133 0 2035 214 91 14 chr3 19774560 19774832 -207749746 + L1MC3 LINE L1 7445 7785 0 256 331 22 14 chr3 19775693 19775832 -207748746 + L2 LINE L2 2856 2995 -277 439 314 69 40 chr3 19775869 19776216 -207748362 - HERV16 LTR ERVL -4539 457 101 862 273 69 54 chr3 19776218 19776661 -207747917 + MER77 LTR ERV1 292 709 -3 968 243 47 79 chr3 19776661 19777064 -207747514 + MER77-int LTR ERV1 19 408 -3783 349 284 37 9 chr3 19777070 19777179 -207747399 + MER77-int LTR ERV1 327 438 -3753 7032 252 81 69 chr3 19777222 19778206 -207746372 + MER77-int LTR ERV1 1227 2197 -1994 1707 159 65 0 chr3 19778206 19778496 -207746082 - AluJb SINE Alu -3 309 1 7032 252 81 69 chr3 19778496 19779632 -207744946 + MER77-int LTR ERV1 2197 3317 -874 207 0 0 0 chr3 19779632 19779655 -207744923 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2077 88 0 32 chr3 19779655 19779940 -207744638 - AluSx SINE Alu -36 276 1 7032 252 81 69 chr3 19779940 19780460 -207744118 + MER77-int LTR ERV1 3317 3911 -280 2396 81 3 0 chr3 19780460 19780770 -207743808 - AluSp SINE Alu -2 311 1 7032 252 81 69 chr3 19780770 19780999 -207743579 + MER77-int LTR ERV1 3911 4136 -55 235 133 117 33 chr3 19781400 19781460 -207743118 + MER77 LTR ERV1 204 268 -337 279 229 299 7 chr3 19781542 19781686 -207742892 + MER77 LTR ERV1 416 601 -4 180 299 75 0 chr3 19781957 19782024 -207742554 - MIR SINE MIR -117 145 74 308 247 53 9 chr3 19782360 19782497 -207742081 + Charlie8 DNA MER1_type 133 1378 -1039 282 308 51 0 chr3 19782577 19782694 -207741884 + MER112 DNA MER1_type 98 220 -40 258 283 71 0 chr3 19782695 19782794 -207741784 + MIR SINE MIR 24 129 -79 328 284 11 11 chr3 19784102 19784197 -207740381 + MIR SINE MIR 52 146 -62 209 206 43 11 chr3 19784285 19784377 -207740201 + CT-rich Low_complexity Low_complexity 1 95 0 305 190 0 0 chr3 19784527 19784585 -207739993 + MLT1F1 LTR MaLR 234 291 -251 421 243 7 59 chr3 19784629 19784765 -207739813 + MLT1F1 LTR MaLR 430 558 -9 598 286 101 42 chr3 19785416 19785870 -207738708 + L2 LINE L2 2828 3308 -5 273 29 0 0 chr3 19786168 19786202 -207738376 + (TG)n Simple_repeat Simple_repeat 2 35 0 363 360 79 6 chr3 19786410 19786588 -207737990 - MIR SINE MIR -70 192 2 245 289 52 10 chr3 19786727 19786824 -207737754 - MIR SINE MIR -161 101 1 369 0 0 0 chr3 19787582 19787623 -207736955 + (TG)n Simple_repeat Simple_repeat 2 42 0 374 299 112 0 chr3 19787713 19787820 -207736758 - L2 LINE L2 -14 3299 3181 309 386 45 43 chr3 19789447 19790000 -207734578 - L3 LINE CR1 -2 1575 965 207 254 15 15 chr3 19790348 19790415 -207734163 - MIR SINE MIR -63 145 79 537 273 50 0 chr3 19790526 19790665 -207733913 - MIR SINE MIR -88 174 29 252 310 5 49 chr3 19791837 19792021 -207732557 + GA-rich Low_complexity Low_complexity 5 180 0 547 331 95 21 chr3 19793917 19794159 -207730419 - MIR SINE MIR 0 262 3 437 249 190 51 chr3 19794258 19794611 -207729967 + L2 LINE L2 2870 3271 -1 201 260 0 62 chr3 19794872 19794968 -207729610 + (CGGGG)n Simple_repeat Simple_repeat 5 94 0 1183 283 231 5 chr3 19795290 19796292 -207728286 - L2 LINE L2 0 3313 2036 212 314 58 39 chr3 19796846 19797002 -207727576 - L2 LINE L2 -165 3107 2949 289 323 44 13 chr3 19797281 19797439 -207727139 - MIR3 SINE MIR -39 169 7 248 293 0 0 chr3 19797621 19797679 -207726899 - L3 LINE CR1 -106 1471 1414 779 275 25 21 chr3 19797686 19797922 -207726656 - MIR SINE MIR -10 252 16 228 364 8 8 chr3 19798974 19799103 -207725475 - MIR3 SINE MIR -46 162 34 226 347 140 7 chr3 19799152 19799357 -207725221 - MIR3 SINE MIR -15 247 15 518 241 63 46 chr3 19801298 19801472 -207723106 + MER5A DNA MER1_type 13 189 0 330 278 9 19 chr3 19802117 19802225 -207722353 + GA-rich Low_complexity Low_complexity 5 111 0 230 281 12 24 chr3 19802789 19802871 -207721707 - MIR SINE MIR -117 145 65 240 111 0 0 chr3 19803638 19803674 -207720904 + (TGGA)n Simple_repeat Simple_repeat 2 37 0 1707 134 0 119 chr3 19803803 19803935 -207720643 + AluJb SINE Alu 5 151 -151 2015 116 14 3 chr3 19803935 19804227 -207720351 + AluSq SINE Alu 1 295 -18 1707 134 0 119 chr3 19804227 19804430 -207720148 + AluJb SINE Alu 151 300 -2 762 204 79 5 chr3 19804433 19804649 -207719929 + L1ME3 LINE L1 5317 5548 -616 588 111 0 33 chr3 19804650 19804740 -207719838 - AluJ/FLAM SINE Alu -225 87 1 367 243 130 8 chr3 19804741 19804885 -207719693 + L1ME3 LINE L1 5537 5681 -483 1363 236 15 20 chr3 19804922 19805321 -207719257 + MER66A LTR ERV1 42 438 -40 843 231 48 94 chr3 19805338 19805389 -207719189 + L1ME3 LINE L1 5710 5762 -404 2122 92 0 0 chr3 19805389 19805703 -207718875 + AluSg SINE Alu 1 314 0 843 231 48 94 chr3 19805703 19805832 -207718746 + L1ME3 LINE L1 5762 5895 -271 861 173 0 37 chr3 19805832 19805994 -207718584 - FRAM SINE Alu -10 156 1 843 231 48 94 chr3 19805994 19806260 -207718318 + L1ME3 LINE L1 5895 6146 -20 358 258 39 77 chr3 19806265 19806447 -207718131 - MIR SINE MIR 0 262 88 183 328 60 26 chr3 19806547 19806663 -207717915 - L2 LINE L2 -99 3173 3054 610 216 36 30 chr3 19806753 19806920 -207717658 + LTR38 LTR ERV1 3 170 -386 182 274 0 20 chr3 19806980 19807031 -207717547 + MER5B DNA MER1_type 6 55 -123 2057 108 17 0 chr3 19807040 19807328 -207717250 + AluSg SINE Alu 1 293 -17 2524 62 0 0 chr3 19807328 19807636 -207716942 + AluY SINE Alu 1 308 -3 2368 87 0 7 chr3 19807906 19808216 -207716362 + AluY SINE Alu 1 308 -3 708 236 142 79 chr3 19808384 19808743 -207715835 - MLT1H LTR MaLR 0 549 151 3265 108 101 41 chr3 19808743 19809186 -207715392 - MER4A LTR ERV1 -4 596 109 2126 119 0 0 chr3 19809186 19809504 -207715074 + AluSx SINE Alu 1 318 0 3265 108 101 41 chr3 19809504 19809620 -207714958 - MER4A LTR ERV1 -491 109 1 708 236 142 79 chr3 19809620 19809731 -207714847 - MLT1H LTR MaLR -398 151 49 834 171 36 10 chr3 19809737 19809930 -207714648 + L1MB3 LINE L1 5417 5614 -569 2152 112 0 0 chr3 19809931 19810227 -207714351 + AluSx SINE Alu 1 296 -16 429 299 46 23 chr3 19810683 19810857 -207713721 + Charlie8 DNA MER1_type 4 181 -2236 245 290 99 56 chr3 19811142 19811304 -207713274 + L3 LINE CR1 1350 1518 -59 744 172 0 0 chr3 19811994 19812110 -207712468 - FLAM_C SINE Alu -27 116 1 290 291 158 25 chr3 19812974 19813132 -207711446 + MER53 DNA DNA 9 187 -2 21 0 0 0 chr3 19813172 19813193 -207711385 + AT_rich Low_complexity Low_complexity 1 21 0 391 286 84 28 chr3 19813943 19814333 -207710245 - LTR16A1 LTR ERVL 0 457 12 2448 186 35 16 chr3 19814486 19814943 -207709635 + L1MB3 LINE L1 5681 6149 -34 1961 122 31 0 chr3 19814943 19815237 -207709341 + AluSg SINE Alu 1 303 -7 2448 186 35 16 chr3 19815237 19815268 -207709310 + L1MB3 LINE L1 6149 6178 -5 403 199 35 99 chr3 19815598 19815739 -207708839 - MIR SINE MIR -93 169 38 382 373 133 15 chr3 19815758 19816163 -207708415 - L2 LINE L2 -2 3270 2818 878 169 14 0 chr3 19816634 19816782 -207707796 + FRAM SINE Alu 22 171 -5 584 318 96 21 chr3 19818006 19818390 -207706188 + MLT1K LTR MaLR 169 581 -7 765 212 0 0 chr3 19818777 19818956 -207705622 + (TGGG)n Simple_repeat Simple_repeat 2 180 0 333 245 29 36 chr3 19819235 19819374 -207705204 + (CAGAGA)n Simple_repeat Simple_repeat 4 141 0 222 321 73 32 chr3 19819670 19819819 -207704759 + MIR SINE MIR 18 165 -63 752 236 188 6 chr3 19819865 19820217 -207704361 + MLT1K LTR MaLR 166 581 -7 777 191 60 165 chr3 19821034 19821452 -207703126 + MLT1A2 LTR MaLR 1 374 0 409 272 20 104 chr3 19821780 19821836 -207702742 - MER113 DNA MER1_type? -174 347 288 2443 77 0 0 chr3 19821836 19822146 -207702432 + AluY SINE Alu 2 311 0 409 272 20 104 chr3 19822146 19822337 -207702241 - MER113 DNA MER1_type? -233 288 127 2207 117 3 0 chr3 19822337 19822646 -207701932 + AluSx SINE Alu 1 310 -2 409 272 20 104 chr3 19822646 19822695 -207701883 - MER113 DNA MER1_type? -394 127 75 217 301 27 14 chr3 19823441 19823514 -207701064 - MIR SINE MIR -71 191 118 272 274 29 10 chr3 19824123 19824225 -207700353 + MIR SINE MIR 26 129 -79 249 305 57 0 chr3 19824509 19824614 -207699964 + L2 LINE L2 3005 3115 -157 572 304 95 3 chr3 19825200 19825483 -207699095 + L2 LINE L2 2458 2766 -548 1587 134 25 0 chr3 19825505 19825744 -207698834 + AluJo SINE Alu 56 300 -12 653 82 0 0 chr3 19825749 19825834 -207698744 + AluSc SINE Alu 1 85 -224 227 340 120 40 chr3 19826010 19826210 -207698368 + MIR SINE MIR 13 228 -34 612 243 108 46 chr3 19826461 19826766 -207697812 - MER102b DNA MER1_type -15 326 3 184 229 0 0 chr3 19826905 19826940 -207697638 - MIR SINE MIR -62 146 112 198 71 0 0 chr3 19828399 19828427 -207696151 + (TCCG)n Simple_repeat Simple_repeat 3 30 0 23 54 0 0 chr3 19828553 19828590 -207695988 + GC_rich Low_complexity Low_complexity 1 37 0 257 231 22 45 chr3 19829046 19829180 -207695398 + (TCTCTG)n Simple_repeat Simple_repeat 2 132 0 583 268 98 21 chr3 19829538 19829773 -207694805 + L2 LINE L2 2915 3167 -146 628 266 10 69 chr3 19829814 19829963 -207694615 + MIR SINE MIR 70 205 -57 2377 139 3 8 chr3 19829963 19830331 -207694247 - MER47A DNA MER2_type 0 366 1 628 266 10 69 chr3 19830331 19830384 -207694194 + MIR SINE MIR 205 260 -2 546 255 210 5 chr3 19830940 19831140 -207693438 + MIR SINE MIR 22 262 0 212 286 0 0 chr3 19831656 19831705 -207692873 + MER5B DNA MER1_type 1 49 -129 388 293 0 64 chr3 19831739 19831879 -207692699 + MER5B DNA MER1_type 46 176 -2 677 267 87 42 chr3 19831891 19832179 -207692399 + MER115 DNA AcHobo 62 362 -331 234 313 52 0 chr3 19832497 19832612 -207691966 + MLT1J LTR MaLR 99 219 -292 827 264 60 37 chr3 19833005 19833387 -207691191 + MLT1K LTR MaLR 166 556 -32 413 280 63 14 chr3 19833628 19833771 -207690807 - MIR SINE MIR 0 262 113 197 158 26 0 chr3 19834299 19834337 -207690241 - MIR SINE MIR -91 117 79 231 250 0 0 chr3 19834407 19834459 -207690119 + MIR SINE MIR 98 149 -59 1994 116 26 26 chr3 19834591 19834902 -207689676 - AluSx SINE Alu -1 311 1 1445 81 49 0 chr3 19835102 19835327 -207689251 + LTR10A LTR ERV1 326 609 0 513 177 10 0 chr3 19835361 19835457 -207689121 + AluJ/FRAM SINE Alu 216 312 0 331 409 91 17 chr3 19835531 19835761 -207688817 - L1M4 LINE L1 -831 5315 5069 948 248 132 75 chr3 19836096 19836535 -207688043 + LTR16B LTR ERVL 1 464 0 183 292 34 67 chr3 19836642 19836731 -207687847 - MIR SINE MIR -114 148 63 195 343 9 57 chr3 19836968 19837073 -207687505 - L3 LINE CR1 -155 1422 1323 212 435 81 0 chr3 19837170 19837356 -207687222 - L3 LINE CR1 -468 1109 909 835 244 103 4 chr3 19837767 19838001 -207686577 + MIR SINE MIR 6 262 0 428 323 23 0 chr3 19837999 19838129 -207686449 - L2 LINE L2 -6 3266 3134 * 403 283 48 36 chr3 19838224 19838390 -207686188 + MIR SINE MIR 77 244 -18 217 258 159 7 chr3 19838538 19838689 -207685889 - L2 LINE L2 -673 2641 2468 252 59 0 0 chr3 19838695 19838729 -207685849 + (CA)n Simple_repeat Simple_repeat 1 34 0 374 266 57 13 chr3 19838775 19838933 -207685645 - MLT1K LTR MaLR -6 582 418 235 233 41 14 chr3 19839025 19839098 -207685480 - MLT1K LTR MaLR -362 226 152 805 263 122 72 chr3 19839648 19840345 -207684233 - L1ME3 LINE L1 -130 6032 5293 512 350 18 53 chr3 19840358 19840923 -207683655 + L2 LINE L2 2698 3238 -34 327 298 113 8 chr3 19841070 19841194 -207683384 + MIR3 SINE MIR 11 147 -61 191 320 55 23 chr3 19841580 19841708 -207682870 - MIR SINE MIR -70 192 61 253 324 68 10 chr3 19841987 19842092 -207682486 + MIR SINE MIR 40 149 -66 1238 303 55 48 chr3 19842124 19842645 -207681933 + L1ME3A LINE L1 5448 5977 -193 2266 97 0 0 chr3 19842645 19842943 -207681635 + AluSg SINE Alu 1 298 -12 1238 303 55 48 chr3 19842943 19843091 -207681487 + L1ME3A LINE L1 5977 6122 -48 262 266 51 0 chr3 19843409 19843488 -207681090 + LTR16C LTR ERVL 254 336 -155 837 218 13 0 chr3 19843503 19843659 -207680919 - FRAM SINE Alu -18 158 1 460 203 93 0 chr3 19843660 19843778 -207680800 + LTR16C LTR ERVL 345 473 -18 227 367 75 7 chr3 19845358 19845604 -207678974 + L1M4 LINE L1 3685 3957 -2189 2245 117 3 0 chr3 19845604 19845913 -207678665 + AluSx SINE Alu 1 310 -2 227 367 75 7 chr3 19845913 19845971 -207678607 + L1M4 LINE L1 3957 4010 -2136 3401 125 7 22 chr3 19846272 19846809 -207677769 - L1MB3 LINE L1 0 6183 5655 267 228 211 24 chr3 19847046 19847169 -207677409 + Charlie8 DNA MER1_type 92 237 -2180 258 188 339 12 chr3 19847319 19847402 -207677176 - MIR SINE MIR -58 150 44 379 340 221 17 chr3 19847512 19847995 -207676583 + L2 LINE L2 2659 3272 0 344 253 0 20 chr3 19847997 19848096 -207676482 + GA-rich Low_complexity Low_complexity 4 100 0 347 242 6 0 chr3 19848101 19848279 -207676299 + (TGGA)n Simple_repeat Simple_repeat 2 180 0 250 318 0 19 chr3 19848282 19848389 -207676189 + GA-rich Low_complexity Low_complexity 4 108 0 211 304 14 0 chr3 19848784 19848853 -207675725 + G-rich Low_complexity Low_complexity 3 72 0 1710 254 106 22 chr3 19849434 19849588 -207674990 - MER97a DNA MER1_type? -205 689 549 2090 115 23 0 chr3 19849588 19849893 -207674685 - AluSp SINE Alu -1 312 1 1710 254 106 22 chr3 19849893 19850121 -207674457 - MER97a DNA MER1_type? -345 549 341 2209 95 10 0 chr3 19850121 19850416 -207674162 + AluSp SINE Alu 1 298 -15 1710 254 106 22 chr3 19850416 19850666 -207673912 - MER97a DNA MER1_type? -553 341 3 468 207 0 41 chr3 19851672 19851793 -207672785 + MER53 DNA DNA 1 116 -73 2854 195 26 27 chr3 19851820 19852351 -207672227 - Charlie1a DNA MER1_type -1343 1418 888 2050 134 0 3 chr3 19852351 19852650 -207671928 - AluSx SINE Alu -12 300 3 2041 144 0 0 chr3 19852652 19852950 -207671628 - AluSx SINE Alu -14 298 1 2854 195 26 27 chr3 19852950 19853144 -207671434 - Charlie1a DNA MER1_type -1874 887 691 527 128 0 0 chr3 19853163 19853241 -207671337 - AluJo SINE Alu -8 304 227 957 124 85 13 chr3 19853241 19853394 -207671184 - AluJo SINE Alu -148 164 1 1729 237 143 3 chr3 19853394 19853973 -207670605 - Charlie1a DNA MER1_type -795 660 1 282 255 41 20 chr3 19853984 19854082 -207670496 + L2 LINE L2 3171 3270 -43 580 313 170 12 chr3 19854224 19854566 -207670012 - L2 LINE L2 -3 3310 2915 355 205 150 50 chr3 19854658 19854858 -207669720 - L2 LINE L2 -100 3213 2994 331 245 78 10 chr3 19854868 19854970 -207669608 - MIR SINE MIR -113 149 41 478 230 20 0 chr3 19855130 19855230 -207669348 - MIR SINE MIR -77 185 84 1999 165 16 69 chr3 19855335 19855399 -207669179 - L1MB7 LINE L1 0 6184 6118 2847 82 3 8 chr3 19855399 19855765 -207668813 + THE1B LTR MaLR 1 364 0 1999 165 16 69 chr3 19855765 19856190 -207668388 - L1MB7 LINE L1 -66 6118 5721 192 224 104 0 chr3 19856846 19856913 -207667665 - MIR SINE MIR -77 131 58 266 278 55 46 chr3 19857027 19857136 -207667442 - MIR3 SINE MIR -51 157 47 508 255 47 18 chr3 19857252 19857447 -207667131 - MIR SINE MIR -15 247 46 284 214 27 104 chr3 19857505 19857692 -207666886 + L2 LINE L2 2846 3066 -206 419 281 96 0 chr3 19859351 19859497 -207665081 - MIR SINE MIR -100 162 3 689 236 7 0 chr3 19860611 19860751 -207663827 - MIR SINE MIR -36 226 86 312 248 89 10 chr3 19861362 19861463 -207663115 - MIR SINE MIR -63 145 37 297 364 176 0 chr3 19861501 19861688 -207662890 - MIR SINE MIR -15 247 28 839 182 0 11 chr3 19862427 19862603 -207661975 + (TGGA)n Simple_repeat Simple_repeat 2 175 0 1089 105 0 0 chr3 19862634 19862796 -207661782 + (TGGA)n Simple_repeat Simple_repeat 2 163 0 903 191 0 0 chr3 19862827 19863237 -207661341 + (TGGA)n Simple_repeat Simple_repeat 1 410 0 187 200 40 20 chr3 19863478 19863528 -207661050 + MIR SINE MIR 77 127 -135 345 266 18 18 chr3 19864537 19864650 -207659928 + MIR SINE MIR 24 136 -72 282 352 84 60 chr3 19864667 19864917 -207659661 - MIR SINE MIR 0 262 7 1047 173 4 0 chr3 19865334 19865850 -207658728 + (TGGA)n Simple_repeat Simple_repeat 1 518 0 394 266 76 65 chr3 19866791 19866975 -207657603 + MLT1J LTR MaLR 229 414 -97 1791 244 91 33 chr3 19867006 19867523 -207657055 + MLT1H LTR MaLR 2 548 -1 303 283 51 43 chr3 19867543 19867681 -207656897 - MIR SINE MIR -16 246 108 2277 68 7 3 chr3 19867687 19867979 -207656599 + AluY SINE Alu 1 293 -18 401 256 158 10 chr3 19867984 19868179 -207656399 + HAL1 LINE L1 1040 1224 -1283 558 212 0 18 chr3 19868482 19868595 -207655983 + MLT1J LTR MaLR 79 189 -322 2901 167 8 14 chr3 19868621 19869113 -207655465 + L1MB3 LINE L1 5692 6180 -3 1537 100 38 128 chr3 19869121 19869470 -207655108 + AluYb8 SINE Alu 1 320 0 820 287 149 12 chr3 19870026 19870536 -207654042 + L2 LINE L2 2737 3309 -4 434 333 44 7 chr3 19871489 19871624 -207652954 + MIR3 SINE MIR 16 155 -53 789 268 155 16 chr3 19872372 19872753 -207651825 + LTR16A1 LTR ERVL 22 455 -2 2113 117 17 82 chr3 19872879 19873082 -207651496 + Tigger2 DNA MER2_type 2334 2549 -169 2195 117 0 0 chr3 19873082 19873390 -207651188 + AluSg SINE Alu 1 308 -2 2113 117 17 82 chr3 19873390 19873415 -207651163 + Tigger2 DNA MER2_type 2549 2574 -144 2162 99 0 3 chr3 19873415 19873709 -207650869 + AluSp SINE Alu 1 293 -20 2113 117 17 82 chr3 19873709 19873891 -207650687 + Tigger2 DNA MER2_type 2574 2718 0 375 346 64 26 chr3 19873926 19874160 -207650418 + L1M4 LINE L1 5078 5320 -826 1270 146 131 44 chr3 19874169 19874444 -207650134 + AluJb SINE Alu 1 299 -13 27 0 0 0 chr3 19875070 19875097 -207649481 + AT_rich Low_complexity Low_complexity 1 27 0 7569 40 6 0 chr3 19875744 19877130 -207647448 + L1PA5 LINE L1 4765 6154 0 301 320 92 45 chr3 19877133 19877157 -207647421 + L1M4 LINE L1 4145 4166 -1980 2143 105 3 19 chr3 19877157 19877472 -207647106 + AluSg SINE Alu 1 310 0 301 320 92 45 chr3 19877472 19878165 -207646413 + L1M4 LINE L1 4166 4896 -1250 1355 199 29 0 chr3 19878294 19878566 -207646012 + AluJo SINE Alu 21 300 -12 445 235 101 8 chr3 19878628 19878747 -207645831 + L2 LINE L2 3180 3309 -4 281 352 62 6 chr3 19878939 19879115 -207645463 - L3 LINE CR1 -59 1518 1333 395 205 21 42 chr3 19879344 19879452 -207645126 + L1MA4A LINE L1 6044 6279 -7 2368 82 0 13 chr3 19879452 19879769 -207644809 + AluSq SINE Alu 1 313 0 477 47 0 0 chr3 19880286 19880350 -207644228 + (TC)n Simple_repeat Simple_repeat 2 65 0 232 254 154 18 chr3 19880357 19880467 -207644111 + L2 LINE L2 2094 2218 -1096 431 258 153 59 chr3 19880748 19881173 -207643405 + L2 LINE L2 2632 3101 -212 352 329 75 62 chr3 19881359 19881681 -207642897 + L2 LINE L2 2927 3252 -20 219 377 24 12 chr3 19881699 19881866 -207642712 - MIR SINE MIR -44 218 50 294 280 43 0 chr3 19881975 19882068 -207642510 + MIR SINE MIR 67 163 -99 1842 160 0 0 chr3 19883136 19883446 -207641132 + AluJo SINE Alu 1 310 0 50 18 0 0 chr3 19883446 19883503 -207641075 + AT_rich Low_complexity Low_complexity 1 57 0 1437 172 56 12 chr3 19883503 19883822 -207640756 + L1MB3 LINE L1 5851 6183 0 267 317 24 37 chr3 19883845 19884009 -207640569 + L1MC/D LINE L1 5619 5780 -341 1106 172 9 14 chr3 19884011 19884226 -207640352 + AluJb SINE Alu 83 296 -16 241 279 86 36 chr3 19884229 19884369 -207640209 + L1MC/D LINE L1 5776 5922 -1886 255 331 30 24 chr3 19885248 19885414 -207639164 - MIR SINE MIR -78 184 18 199 255 0 0 chr3 19885768 19885815 -207638763 - MIR SINE MIR -72 136 90 202 240 0 125 chr3 19886584 19886636 -207637942 - MIR SINE MIR -69 193 157 2347 90 0 0 chr3 19886636 19886935 -207637643 - AluSg SINE Alu -11 299 1 202 240 0 125 chr3 19886935 19886978 -207637600 - MIR SINE MIR -105 157 110 1205 186 237 17 chr3 19887208 19887558 -207637020 + MLT1H LTR MaLR 64 490 -59 2334 256 33 17 chr3 19887571 19888043 -207636535 + L1M4 LINE L1 4335 4825 -1321 2157 106 10 10 chr3 19888043 19888355 -207636223 + AluSq SINE Alu 1 312 -1 2334 256 33 17 chr3 19888355 19888644 -207635934 + L1M4 LINE L1 4825 5108 -1038 537 201 67 0 chr3 19888642 19888776 -207635802 + L1ME3 LINE L1 4686 4828 -1318 * 804 115 0 0 chr3 19888781 19888894 -207635684 + AluSq/x SINE Alu 1 113 -200 1687 257 97 19 chr3 19889016 19889739 -207634839 + L1ME3 LINE L1 5170 5951 -211 2121 122 0 0 chr3 19889743 19890039 -207634539 + AluSx SINE Alu 1 296 -16 850 147 0 0 chr3 19890060 19890196 -207634382 + FLAM_C SINE Alu 1 136 -7 642 274 33 9 chr3 19890198 19890413 -207634165 + L1ME3 LINE L1 5941 6160 -2 311 331 41 58 chr3 19890484 19890726 -207633852 + L1MC4 LINE L1 7596 7833 -209 1723 167 10 3 chr3 19891964 19892269 -207632309 - Tigger3b DNA MER2_type 0 1231 925 2611 153 91 53 chr3 19892276 19892858 -207631720 - MER4B LTR ERV1 -6 604 1 * 3502 114 42 91 chr3 19892858 19893196 -207631382 - Tigger3b DNA MER2_type -2100 928 575 2163 111 10 0 chr3 19893196 19893503 -207631075 - AluSx SINE Alu -2 310 1 3502 114 42 91 chr3 19893503 19893560 -207631018 - Tigger3b DNA MER2_type -2453 575 517 1851 133 6 41 chr3 19893560 19893876 -207630702 + AluSx SINE Alu 1 305 -7 3502 114 42 91 chr3 19893876 19893887 -207630691 - Tigger3b DNA MER2_type -2511 517 507 2271 95 0 0 chr3 19893887 19894193 -207630385 + AluSg SINE Alu 2 307 -3 3502 114 42 91 chr3 19894193 19894546 -207630032 - Tigger3b DNA MER2_type -2521 507 205 1078 116 0 52 chr3 19894550 19894746 -207629832 - AluSp SINE Alu 0 310 124 747 156 162 52 chr3 19894746 19894919 -207629659 - Tigger3b DNA MER2_type -1039 192 1 264 313 12 0 chr3 19895416 19895499 -207629079 + L2 LINE L2 2240 2323 -991 300 211 0 0 chr3 19896617 19896674 -207627904 - Tigger3b DNA MER2_type -1173 58 2 538 309 28 11 chr3 19896970 19897148 -207627430 + MIR SINE MIR 70 250 -12 447 244 69 15 chr3 19897619 19897750 -207626828 - MIR SINE MIR -66 196 59 456 302 27 7 chr3 19898299 19898448 -207626130 - MIR SINE MIR -87 175 24 359 204 45 11 chr3 19898747 19898835 -207625743 + MLT1H LTR MaLR 116 206 -343 520 253 211 38 chr3 19899299 19899536 -207625042 + MLT1H LTR MaLR 209 486 -63 451 225 139 43 chr3 19899812 19899999 -207624579 + L2 LINE L2 3108 3312 -1 261 311 25 0 chr3 19900215 19900334 -207624244 + L1ME3A LINE L1 5729 5850 -314 539 235 162 11 chr3 19900337 19900516 -207624062 + L1ME3A LINE L1 5916 6121 -49 575 333 13 10 chr3 19900581 19900843 -207623735 + L1MC4a LINE L1 5666 5817 -345 1021 209 26 17 chr3 19900881 19901111 -207623467 + Charlie1 DNA MER1_type 1 232 -2529 3364 197 57 27 chr3 19901118 19901300 -207623278 + L1MB7 LINE L1 5382 5557 -627 2259 98 0 0 chr3 19901300 19901596 -207622982 - AluSp SINE Alu -17 296 1 3364 197 57 27 chr3 19901596 19902183 -207622395 + L1MB7 LINE L1 5557 6174 -10 776 231 174 22 chr3 19902784 19903129 -207621449 + L2 LINE L2 2684 2975 -338 2326 63 0 17 chr3 19903129 19903430 -207621148 - AluSx SINE Alu -11 301 6 776 231 174 22 chr3 19903430 19903633 -207620945 + L2 LINE L2 2975 3313 0 195 147 0 0 chr3 19903766 19903800 -207620778 + L2 LINE L2 3016 3049 -223 381 245 71 20 chr3 19905146 19905244 -207619334 + MIR SINE MIR 112 214 -48 242 244 185 67 chr3 19905318 19905453 -207619125 - L2 LINE L2 -9 3263 3113 227 362 161 0 chr3 19906262 19906411 -207618167 - MIR SINE MIR -34 228 56 2099 92 34 0 chr3 19906454 19906749 -207617829 - AluSq SINE Alu -8 305 1 451 313 50 72 chr3 19906768 19907184 -207617394 - L2 LINE L2 -24 3248 2842 200 297 53 42 chr3 19907850 19907997 -207616581 + MIR SINE MIR 5 141 -67 366 243 47 47 chr3 19908194 19908342 -207616236 + Charlie8 DNA MER1_type 84 231 -2186 210 143 0 0 chr3 19909150 19909185 -207615393 + (TCC)n Simple_repeat Simple_repeat 2 36 0 250 336 30 71 chr3 19911440 19911708 -207612870 - L2 LINE L2 -26 3287 3031 309 262 168 16 chr3 19911964 19912155 -207612423 - L2 LINE L2 -731 2583 2364 1635 182 35 0 chr3 19912392 19912678 -207611900 - AluJo SINE Alu -11 301 6 1179 131 11 0 chr3 19912712 19912903 -207611675 + AluSx SINE Alu 1 193 -119 251 278 55 46 chr3 19913231 19913340 -207611238 - MIR3 SINE MIR -51 157 47 296 235 91 45 chr3 19913456 19913588 -207610990 - MIR SINE MIR -15 247 110 1382 122 14 5 chr3 19913725 19913938 -207610640 + AluSq SINE Alu 70 284 -29 198 71 0 0 chr3 19914103 19914131 -207610447 + (CAAAAA)n Simple_repeat Simple_repeat 2 29 0 2098 115 3 3 chr3 19914168 19914464 -207610114 - AluSq SINE Alu -17 296 1 320 335 125 45 chr3 19914542 19914766 -207609812 - L3 LINE CR1 -94 1483 1242 325 93 17 2 chr3 19914903 19914960 -207609618 - MLT2B1 LTR ERVL 0 464 415 1545 180 55 3 chr3 19914960 19915249 -207609329 + MER7A DNA MER2_type 2 303 -43 1363 212 21 153 chr3 19915279 19915704 -207608874 - MLT2B1 LTR ERVL -41 373 5 580 256 38 101 chr3 19915708 19915889 -207608689 - L1M4 LINE L1 -3132 3014 2823 4179 121 28 35 chr3 19915889 19915939 -207608639 - L1MB3 LINE L1 -2 6181 6132 1016 211 0 0 chr3 19915939 19916110 -207608468 - FAM SINE Alu -4 171 1 2007 103 0 60 chr3 19916119 19916438 -207608140 - AluSq SINE Alu -13 300 1 4179 121 28 35 chr3 19916438 19917087 -207607491 - L1MB3 LINE L1 -59 6124 5477 580 256 38 101 chr3 19917087 19917127 -207607451 - L1M4 LINE L1 -3323 2823 2782 2040 131 0 10 chr3 19917127 19917464 -207607114 + AluSx SINE Alu 1 312 0 580 256 38 101 chr3 19917464 19917497 -207607081 - L1M4 LINE L1 -3364 2782 2748 3501 68 11 7 chr3 19917497 19917939 -207606639 - MLT2A1 LTR ERVL 0 444 1 580 256 38 101 chr3 19917939 19918206 -207606372 - L1M4 LINE L1 -3398 2748 2524 * 2728 234 62 68 chr3 19918195 19918273 -207606305 + L1ME LINE L1 3347 3424 -2722 2438 70 0 10 chr3 19918273 19918574 -207606004 + AluY SINE Alu 1 298 -13 2728 234 62 68 chr3 19918574 19918785 -207605793 + L1ME LINE L1 3424 3635 -2511 560 128 0 0 chr3 19918785 19918871 -207605707 - FLAM_C SINE Alu -2 141 56 867 165 0 0 chr3 19918792 19918925 -207605653 - FLAM_A SINE Alu 0 133 1 2728 234 62 68 chr3 19918925 19919086 -207605492 + L1ME LINE L1 3689 3850 -2296 2302 114 0 0 chr3 19919086 19919385 -207605193 + AluSx SINE Alu 1 299 -13 2728 234 62 68 chr3 19919385 19919454 -207605124 + L1ME LINE L1 3850 3918 -2228 2266 123 7 0 chr3 19919454 19919756 -207604822 + AluSx SINE Alu 1 304 -8 2728 234 62 68 chr3 19919756 19920370 -207604208 + L1ME LINE L1 3918 4485 -1661 2416 85 0 16 chr3 19920370 19920686 -207603892 - AluY SINE Alu 0 311 1 2728 234 62 68 chr3 19920686 19920731 -207603847 + L1ME LINE L1 4485 4529 -1617 4419 125 19 126 chr3 19920736 19922283 -207602295 - pTR5 LTR ERV1 0 2606 1524 2301 100 3 17 chr3 19922293 19922593 -207601985 - AluSp SINE Alu -15 298 3 1483 213 133 75 chr3 19922597 19922710 -207601868 + L1ME LINE L1 4535 4640 -1526 1885 151 13 10 chr3 19922710 19923008 -207601570 - AluJb SINE Alu -13 299 1 1483 213 133 75 chr3 19923008 19923086 -207601492 + L1ME LINE L1 4640 4712 -1454 1800 132 0 0 chr3 19923086 19923336 -207601242 + AluSq SINE Alu 64 313 0 1483 213 133 75 chr3 19923336 19923574 -207601004 + L1ME LINE L1 4712 4935 -1231 2077 105 0 41 chr3 19923574 19923908 -207600670 - AluSx SINE Alu 0 312 1 1483 213 133 75 chr3 19923908 19924136 -207600442 + L1ME LINE L1 4935 5148 -1018 1661 183 3 29 chr3 19924136 19924442 -207600136 + AluJb SINE Alu 13 310 -2 1483 213 133 75 chr3 19924442 19924497 -207600081 + L1ME LINE L1 5148 5198 -968 1465 82 77 0 chr3 19924497 19924533 -207600045 + AluY SINE Alu 84 116 -195 612 0 0 0 chr3 19924533 19924601 -207599977 + (TAAAA)n Simple_repeat Simple_repeat 2 69 0 1465 82 77 0 chr3 19924601 19924760 -207599818 + AluY SINE Alu 116 294 -17 1483 213 133 75 chr3 19924760 19924820 -207599758 + L1ME LINE L1 5198 5253 -913 2389 100 6 0 chr3 19924820 19925131 -207599447 + AluSq SINE Alu 1 313 0 1483 213 133 75 chr3 19925131 19925193 -207599385 + L1ME LINE L1 5253 5477 -689 1695 136 0 118 chr3 19925195 19925330 -207599248 + AluJb SINE Alu 2 75 -227 2112 116 14 3 chr3 19925330 19925622 -207598956 + AluSq SINE Alu 1 295 -18 1695 136 0 118 chr3 19925622 19925825 -207598753 + AluJb SINE Alu 75 300 -2 799 204 79 5 chr3 19925828 19926044 -207598534 + L1ME3 LINE L1 5317 5548 -616 594 112 0 34 chr3 19926045 19926134 -207598444 - AluS SINE Alu -225 87 2 395 216 156 9 chr3 19926136 19926268 -207598310 + L1ME3 LINE L1 5537 5685 -477 1334 243 17 19 chr3 19926305 19926716 -207597862 + MER66A LTR ERV1 29 438 -40 913 206 35 99 chr3 19926733 19926784 -207597794 + L1ME3 LINE L1 5713 5766 -396 2227 89 0 0 chr3 19926784 19927098 -207597480 + AluSg SINE Alu 1 314 0 913 206 35 99 chr3 19927098 19927227 -207597351 + L1ME3 LINE L1 5766 5902 -260 847 173 0 37 chr3 19927227 19927389 -207597189 - FRAM SINE Alu -10 156 1 913 206 35 99 chr3 19927389 19927580 -207596998 + L1ME3 LINE L1 5902 6062 -100 385 253 39 77 chr3 19927660 19927842 -207596736 - MIR SINE MIR 0 262 88 637 216 36 30 chr3 19928148 19928315 -207596263 + LTR38 LTR ERV1 3 170 -386 189 218 39 115 chr3 19928373 19928435 -207596143 + MER5B DNA MER1_type 1 66 -112 2163 107 17 0 chr3 19928435 19928725 -207595853 + AluSg SINE Alu 1 295 -15 2639 59 0 0 chr3 19928725 19929031 -207595547 + AluY SINE Alu 1 306 -5 189 218 39 115 chr3 19929031 19929045 -207595533 + MER5B DNA MER1_type 64 72 -106 2494 87 0 6 chr3 19929303 19929614 -207594964 + AluY SINE Alu 1 309 -2 724 219 153 89 chr3 19929781 19930140 -207594438 - MLT1H LTR MaLR 0 549 151 3206 108 101 41 chr3 19930140 19930583 -207593995 - MER4A LTR ERV1 -4 596 109 2209 119 0 0 chr3 19930583 19930901 -207593677 + AluSx SINE Alu 1 318 0 3206 108 101 41 chr3 19930901 19931017 -207593561 - MER4A LTR ERV1 -491 109 1 724 219 153 89 chr3 19931017 19931128 -207593450 - MLT1H LTR MaLR -398 151 49 3352 154 42 32 chr3 19931128 19931328 -207593250 + L1MB3 LINE L1 5411 5608 -575 2223 102 24 0 chr3 19931328 19931622 -207592956 + AluSq SINE Alu 1 301 -12 3352 154 42 32 chr3 19931622 19931924 -207592654 + L1MB3 LINE L1 5608 5925 -258 2566 82 0 0 chr3 19931924 19932230 -207592348 - AluSg SINE Alu -4 306 1 3352 154 42 32 chr3 19932230 19932442 -207592136 + L1MB3 LINE L1 5925 6133 -50 304 86 0 86 chr3 19932449 19932507 -207592071 + L1MA9 LINE L1 5995 6047 -244 245 138 17 0 chr3 19932512 19932570 -207592008 + L1MB3 LINE L1 6125 6183 0 957 206 6 0 chr3 19932703 19932873 -207591705 - AluJb SINE Alu -5 307 137 1442 155 86 52 chr3 19933316 19933607 -207590971 - AluJo SINE Alu -9 303 3 1817 168 3 16 chr3 19936729 19937032 -207587546 + AluJo SINE Alu 3 301 -11 2138 119 7 0 chr3 19937032 19937325 -207587253 + AluSp SINE Alu 1 295 -18 293 271 10 42 chr3 19937422 19937518 -207587060 - MIR SINE MIR -61 201 109 226 181 368 15 chr3 19938288 19938421 -207586157 - MLT1K LTR MaLR -22 566 387 1764 128 69 11 chr3 19939053 19939327 -207585251 - AluJb SINE Alu -22 290 1 514 241 25 16 chr3 19939382 19939533 -207585045 - MIR3 SINE MIR -79 129 3 871 148 32 32 chr3 19939573 19939762 -207584816 - MER53 DNA DNA 0 189 1 380 252 29 10 chr3 19939794 19939897 -207584681 - MIR SINE MIR -83 125 21 306 375 7 21 chr3 19940211 19940355 -207584223 + MIR3 SINE MIR 42 183 -25 1937 119 72 0 chr3 19940778 19941056 -207583522 + AluSx SINE Alu 1 298 -14 476 253 157 64 chr3 19941086 19941494 -207583084 - LTR33A LTR ERVL -1 522 77 3797 173 37 62 chr3 19942302 19942734 -207581844 + L1MB3 LINE L1 4992 5433 -750 2022 127 0 40 chr3 19942734 19943058 -207581520 + AluSx SINE Alu 1 311 -1 3797 173 37 62 chr3 19943058 19943705 -207580873 + L1MB3 LINE L1 5433 6033 -150 2357 107 3 0 chr3 19943705 19944014 -207580564 + AluSx SINE Alu 1 310 -2 3797 173 37 62 chr3 19944014 19944134 -207580444 + L1MB3 LINE L1 6033 6154 -29 2045 108 34 7 chr3 19944135 19944430 -207580148 - AluSq SINE Alu -10 303 1 303 28 0 0 chr3 19944438 19944474 -207580104 + (TG)n Simple_repeat Simple_repeat 1 36 0 1176 174 14 33 chr3 19944474 19944744 -207579834 - AluSq SINE Alu -31 282 18 2223 100 0 19 chr3 19945054 19945364 -207579214 + AluSx SINE Alu 1 304 -8 2402 97 3 0 chr3 19945699 19946010 -207578568 - AluSp SINE Alu -1 312 1 376 272 76 49 chr3 19946083 19946267 -207578311 - L1ME4a LINE L1 -7 6114 5926 2156 121 0 3 chr3 19946299 19946604 -207577974 + AluSg1 SINE Alu 1 304 -5 268 246 0 0 chr3 19947126 19947183 -207577395 + LTR33A LTR ERVL 467 523 0 22 35 0 0 chr3 19947259 19947288 -207577290 + AT_rich Low_complexity Low_complexity 1 29 0 1591 150 81 0 chr3 19947443 19947690 -207576888 - AluJo SINE Alu -45 267 1 2803 148 3 61 chr3 19947692 19948202 -207576376 - L1ME4a LINE L1 -362 5822 5284 2084 139 0 19 chr3 19948202 19948518 -207576060 - AluSx SINE Alu -2 310 1 2803 148 3 61 chr3 19948518 19948529 -207576049 - L1ME4a LINE L1 -900 5284 5333 2516 73 3 0 chr3 19948529 19948832 -207575746 - AluSp SINE Alu -9 304 1 2803 148 3 61 chr3 19948832 19948884 -207575694 - L1ME4a LINE L1 -850 5334 5281 261 214 54 0 chr3 19948900 19948956 -207575622 + MIR SINE MIR 186 244 -18 417 252 53 13 chr3 19948959 19949110 -207575468 - MER112 DNA MER1_type -102 158 2 784 244 71 10 chr3 19949178 19949458 -207575120 + MER46C DNA MER2_type 1 298 -40 1092 234 69 15 chr3 19949458 19949792 -207574786 - LTR48B LTR ERV1 0 644 293 1060 88 7 0 chr3 19949795 19949943 -207574635 + MER41B LTR ERV1 1 149 -486 5395 69 18 7 chr3 19949943 19950627 -207573951 - LTR8 LTR ERV1 0 691 1 8256 52 4 25 chr3 19950627 19951076 -207573502 - HUERS-P1 LTR ERV1 0 6263 5806 2155 130 3 0 chr3 19951076 19951398 -207573180 - AluSx SINE Alu 0 312 1 8256 52 4 25 chr3 19951398 19952054 -207572524 - HUERS-P1 LTR ERV1 -457 5806 5182 329 176 0 68 chr3 19952064 19952138 -207572440 - L1MCa LINE L1 -4363 2063 1995 * 355 221 0 0 chr3 19952118 19952186 -207572392 - L1MC4 LINE L1 -1339 6703 6636 1249 205 31 14 chr3 19952320 19952613 -207571965 + L1 LINE L1 3950 4247 -1899 351 0 0 0 chr3 19952615 19952654 -207571924 + (CA)n Simple_repeat Simple_repeat 2 40 0 2155 115 7 3 chr3 19952674 19952969 -207571609 + AluSc SINE Alu 1 296 -13 415 257 0 9 chr3 19952969 19953082 -207571496 - L1M4 LINE L1 -1500 4646 4535 2301 100 3 17 chr3 19953086 19953386 -207571192 + AluSp SINE Alu 3 298 -15 4419 125 19 126 chr3 19953396 19954943 -207569635 + pTR5 LTR ERV1 742 2606 0 2294 109 0 10 chr3 19954993 19955305 -207569273 + AluY SINE Alu 1 309 -2 2288 99 0 3 chr3 19955330 19955624 -207568954 + AluSp SINE Alu 1 293 -20 1087 154 16 0 chr3 19955624 19955806 -207568772 + Tigger2 DNA MER2_type 2524 2708 -10 337 329 77 39 chr3 19955841 19956075 -207568503 + L1M4 LINE L1 5078 5320 -826 1368 146 131 44 chr3 19956084 19956359 -207568219 + AluJb SINE Alu 1 299 -13 27 0 0 0 chr3 19956985 19957012 -207567566 + AT_rich Low_complexity Low_complexity 1 27 0 191 281 35 18 chr3 19957433 19957490 -207567088 + MIR SINE MIR 94 151 -111 253 319 19 44 chr3 19957546 19957706 -207566872 + L1M4 LINE L1 4003 4158 -1988 5277 46 11 0 chr3 19957716 19958816 -207565762 + L1PA5 LINE L1 4821 5929 -225 699 306 64 30 chr3 20059309 20059574 -207465004 + HERV16 LTR ERVL 1229 1502 -3494 1988 132 0 7 chr3 20059595 20059899 -207464679 - AluSx SINE Alu -10 302 1 1171 282 34 8 chr3 20059915 20060270 -207464308 + HERV16 LTR ERVL 2315 2678 -2318 249 324 0 10 chr3 20060380 20060482 -207464096 + AluSp SINE Alu 20 120 -183 270 0 0 0 chr3 20060682 20060712 -207463866 + (TA)n Simple_repeat Simple_repeat 2 31 0 22 0 0 0 chr3 20060883 20060905 -207463673 + AT_rich Low_complexity Low_complexity 1 22 0 188 65 0 32 chr3 20061065 20061096 -207463482 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2061 91 11 0 chr3 20061098 20061374 -207463204 - AluSg SINE Alu -31 279 1 295 185 0 0 chr3 20061374 20061428 -207463150 - Alu SINE Alu -4 298 245 671 171 0 9 chr3 20061430 20061541 -207463037 - AluJo/FLAM SINE Alu -201 111 2 311 364 13 46 chr3 20061546 20061628 -207462950 + L2 LINE L2 3122 3198 -74 2209 108 3 0 chr3 20061628 20061933 -207462645 - AluSg SINE Alu -4 306 1 311 364 13 46 chr3 20061933 20062001 -207462577 + L2 LINE L2 3198 3267 -5 23 0 0 0 chr3 20062301 20062324 -207462254 + AT_rich Low_complexity Low_complexity 1 23 0 2153 99 3 7 chr3 20062334 20062637 -207461941 + AluSg SINE Alu 1 302 -8 1677 123 0 0 chr3 20062653 20062897 -207461681 + AluSg SINE Alu 54 297 -13 784 60 10 0 chr3 20063099 20063199 -207461379 - AluSc SINE Alu -207 102 2 830 146 8 0 chr3 20063228 20063358 -207461220 + AluSg SINE Alu 2 132 -178 720 135 10 0 chr3 20063357 20063461 -207461117 - AluJo/FLAM SINE Alu -205 107 3 * 433 175 0 12 chr3 20063468 20063548 -207461030 - L1M4 LINE L1 -1034 5112 5034 2205 97 10 0 chr3 20063550 20063860 -207460718 - AluSq SINE Alu 0 313 1 1116 169 9 35 chr3 20063926 20064157 -207460421 + AluJo SINE Alu 85 309 -3 625 158 0 10 chr3 20064161 20064262 -207460316 + LTR44 LTR ERV1 1 100 -419 1477 138 47 25 chr3 20064263 20064539 -207460039 + AluJb SINE Alu 18 299 -13 625 91 11 0 chr3 20064565 20064653 -207459925 + AluY SINE Alu 215 303 -8 2207 91 3 3 chr3 20064658 20064956 -207459622 - AluSp SINE Alu -15 298 1 1772 122 86 118 chr3 20064976 20065191 -207459387 + LTR44 LTR ERV1 101 321 -198 1302 189 44 37 chr3 20065191 20065322 -207459256 + AluJo SINE Alu 2 131 -171 2226 82 14 0 chr3 20065322 20065615 -207458963 + AluSp SINE Alu 1 297 -16 1302 189 44 37 chr3 20065615 20065779 -207458799 + AluJo SINE Alu 131 299 -3 1984 98 0 73 chr3 20065780 20065934 -207458644 + AluSq SINE Alu 2 123 -190 2034 75 7 4 chr3 20065934 20066212 -207458366 + AluY SINE Alu 21 299 -12 1984 98 0 73 chr3 20066212 20066374 -207458204 + AluSq SINE Alu 123 295 -18 1772 122 86 118 chr3 20066374 20066449 -207458129 + LTR44 LTR ERV1 321 397 -122 1933 68 0 36 chr3 20066449 20066728 -207457850 + AluY SINE Alu 34 302 -9 2049 102 20 7 chr3 20066733 20067028 -207457550 + AluSx SINE Alu 1 299 -13 1772 122 86 118 chr3 20067028 20067161 -207457417 + LTR44 LTR ERV1 401 519 0 1616 157 43 33 chr3 20067305 20067450 -207457128 + AluJb SINE Alu 1 143 -169 2307 72 3 0 chr3 20067450 20067743 -207456835 + AluSg SINE Alu 1 294 -16 1616 157 43 33 chr3 20067743 20067896 -207456682 + AluJb SINE Alu 143 302 -10 304 183 0 0 chr3 20067929 20067989 -207456589 - Alu SINE Alu -2 300 241 422 99 49 12 chr3 20068107 20068188 -207456390 + AluSc SINE Alu 206 289 -20 755 133 8 16 chr3 20068203 20068331 -207456247 + L1MB3 LINE L1 5601 5727 -456 816 157 17 47 chr3 20068338 20068510 -207456068 - LTR37A LTR ERV1 -242 184 18 1810 170 99 7 chr3 20068742 20069123 -207455455 + L1MB3 LINE L1 5738 6145 -57 2120 125 0 0 chr3 20069245 20069556 -207455022 + AluSx SINE Alu 1 311 -1 540 196 93 0 chr3 20069698 20069805 -207454773 + FLAM_C SINE Alu 2 118 -25 2772 159 91 8 chr3 20069846 20070361 -207454217 + MER89 LTR ERV1 2 559 0 2439 55 0 0 chr3 20070832 20071125 -207453453 + AluY SINE Alu 1 293 -18 2142 81 10 0 chr3 20071619 20071916 -207452662 + AluSx SINE Alu 5 304 -8 2102 127 3 7 chr3 20071992 20072300 -207452278 + AluSx SINE Alu 1 307 -5 1692 166 7 10 chr3 20072327 20072635 -207451943 + AluJb SINE Alu 1 307 -5 318 261 0 0 chr3 20072651 20072716 -207451862 + L1MC4a LINE L1 5836 5900 -1908 1793 99 40 33 chr3 20072722 20073025 -207451553 + AluSq SINE Alu 1 305 -8 1057 125 0 27 chr3 20073141 20073325 -207451253 - AluSc SINE Alu -11 298 120 605 191 0 0 chr3 20073472 20073577 -207451001 + FRAM SINE Alu 20 124 -52 662 264 278 0 chr3 20073591 20073864 -207450714 - L2 LINE L2 -613 2701 2353 571 284 61 99 chr3 20073864 20074139 -207450439 - L1MEd LINE L1 -5736 383 99 1423 182 17 4 chr3 20074139 20074375 -207450203 + MER8 DNA MER2_type 1 239 0 1916 139 17 0 chr3 20074377 20074672 -207449906 - AluSx SINE Alu -4 308 9 571 284 61 99 chr3 20074672 20074788 -207449790 - L1MEd LINE L1 -6021 98 4 244 284 302 9 chr3 20075026 20075187 -207449391 - L3 LINE CR1 -3 1574 1461 1726 150 13 13 chr3 20075187 20075494 -207449084 + AluJo SINE Alu 1 307 -5 244 284 302 9 chr3 20075494 20075653 -207448925 - L3 LINE CR1 -116 1461 1160 350 346 15 7 chr3 20077521 20077657 -207446921 + L1MEd LINE L1 561 697 -5422 198 71 0 0 chr3 20077663 20077691 -207446887 + (CA)n Simple_repeat Simple_repeat 2 29 0 2149 112 0 0 chr3 20077976 20078271 -207446307 - AluSx SINE Alu -16 296 2 408 118 0 15 chr3 20078271 20078339 -207446239 + L1MB8 LINE L1 6111 6177 -1 849 186 25 25 chr3 20078371 20078532 -207446046 + FRAM SINE Alu 2 162 -4 807 139 0 31 chr3 20078533 20078662 -207445916 + FLAM_C SINE Alu 2 126 -17 1842 118 14 24 chr3 20078688 20078984 -207445594 + AluSx SINE Alu 2 294 -18 1972 124 0 3 chr3 20078992 20079282 -207445296 + AluSg SINE Alu 1 289 -21 318 290 45 26 chr3 20079283 20079438 -207445140 + L1MEd LINE L1 1029 1186 -4933 233 139 12 139 chr3 20079437 20079523 -207445055 + L1M4 LINE L1 3932 4006 -2140 * 411 239 33 11 chr3 20079547 20079639 -207444939 + MER5A DNA MER1_type 3 96 -93 1941 130 6 32 chr3 20079639 20079955 -207444623 - AluSx SINE Alu -4 308 1 1448 215 13 19 chr3 20080203 20080510 -207444068 + MLT1A1 LTR MaLR 1 305 -60 188 35 35 0 chr3 20080511 20080540 -207444038 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1726 75 0 0 chr3 20080540 20080754 -207443824 - AluSg/x SINE Alu -33 279 66 681 108 10 10 chr3 20080854 20080956 -207443622 - AluSq/x SINE Alu -210 103 2 244 259 184 70 chr3 20083091 20083193 -207441385 - Charlie7 DNA MER1_type -1923 689 600 2192 103 3 0 chr3 20083193 20083493 -207441085 - AluSx SINE Alu -11 301 1 244 259 184 70 chr3 20083493 20083591 -207440987 - Charlie7 DNA MER1_type -2012 600 466 609 195 58 190 chr3 20083999 20084316 -207440262 + Charlie7 DNA MER1_type 1428 1785 -827 180 0 0 0 chr3 20084316 20084336 -207440242 + (ATTG)n Simple_repeat Simple_repeat 2 21 0 1640 160 7 11 chr3 20084337 20084618 -207439960 - AluJo SINE Alu -32 280 1 609 195 58 190 chr3 20084618 20084714 -207439864 + Charlie7 DNA MER1_type 1784 1788 -824 2242 73 0 10 chr3 20084759 20085062 -207439516 - AluY SINE Alu -11 300 1 1768 93 4 8 chr3 20085068 20085316 -207439262 + AluSp SINE Alu 53 299 -14 254 254 87 8 chr3 20085317 20085443 -207439135 + Charlie7 DNA MER1_type 2429 2564 -48 889 168 13 0 chr3 20085697 20085852 -207438726 - AluSg/x SINE Alu -20 290 134 324 311 49 37 chr3 20086056 20086220 -207438358 + MER5A DNA MER1_type 14 179 -10 2292 91 0 3 chr3 20086777 20087084 -207437494 - AluSp SINE Alu -6 307 2 2007 107 3 35 chr3 20087239 20087549 -207437029 - AluSx SINE Alu -12 300 1 2375 90 3 0 chr3 20087619 20087931 -207436647 - AluSp SINE Alu 0 313 1 607 185 49 90 chr3 20087931 20088121 -207436457 - LTR23-int LTR ERV1 -2673 3590 3394 2048 92 20 26 chr3 20088121 20088424 -207436154 - AluSq SINE Alu -12 301 1 607 185 49 90 chr3 20088424 20088621 -207435957 - LTR23-int LTR ERV1 -2869 3394 1920 2111 108 10 10 chr3 20088770 20089075 -207435503 - AluSx SINE Alu -7 305 1 1564 141 23 59 chr3 20089137 20089442 -207435136 - AluJb SINE Alu -18 294 1 316 197 15 4 chr3 20089504 20089610 -207434968 - LTR23-int LTR ERV1 -3093 1929 1735 1798 154 3 0 chr3 20089705 20089991 -207434587 - AluSx SINE Alu -25 287 1 2157 156 97 0 chr3 20090393 20090783 -207433795 - MSTA LTR MaLR 0 428 1 879 134 49 0 chr3 20090783 20090925 -207433653 - MSTA-int LTR MaLR 0 1651 1503 1487 97 0 0 chr3 20090925 20091120 -207433458 - AluSx SINE Alu -117 195 1 1249 148 29 162 chr3 20091154 20091499 -207433079 + AluJb SINE Alu 4 302 0 2116 101 7 0 chr3 20091505 20091802 -207432776 + AluSq SINE Alu 1 299 -14 257 272 0 0 chr3 20091839 20091920 -207432658 - L1 LINE L1 -2380 3766 3686 815 204 24 0 chr3 20091929 20092096 -207432482 - FRAM SINE Alu -12 164 1 544 180 0 0 chr3 20092096 20092185 -207432393 - L1ME LINE L1 -598 5568 5480 578 113 0 0 chr3 20092185 20092265 -207432313 - AluSg/x SINE Alu -16 294 215 1929 112 14 0 chr3 20092673 20092980 -207431598 - AluSx SINE Alu 0 311 1 1653 180 3 0 chr3 20093028 20093322 -207431256 - AluJo SINE Alu -16 296 2 426 273 88 10 chr3 20093329 20093523 -207431055 - L1ME LINE L1 -298 5823 5615 494 216 0 0 chr3 20093920 20094008 -207430570 + AluJ/FLAM SINE Alu 2 89 -223 333 235 0 59 chr3 20094183 20094285 -207430293 - L1ME LINE L1 -539 5631 5536 416 154 26 0 chr3 20094419 20094497 -207430081 - Charlie5 DNA MER1_type 0 2624 2545 2005 141 0 0 chr3 20094500 20094791 -207429787 - AluSx SINE Alu -21 291 1 1379 195 14 30 chr3 20094791 20094952 -207429626 - AluJo SINE Alu -20 292 137 2038 107 29 0 chr3 20094952 20095233 -207429345 - AluSx SINE Alu -23 289 1 1379 195 14 30 chr3 20095233 20095368 -207429210 - AluJo SINE Alu -175 137 1 1134 129 15 40 chr3 20095415 20095616 -207428962 - AluJo SINE Alu -116 196 1 32 43 0 0 chr3 20095968 20096014 -207428564 + AT_rich Low_complexity Low_complexity 1 46 0 280 371 9 9 chr3 20096105 20096221 -207428357 + MIR SINE MIR 32 147 -115 2277 91 3 3 chr3 20096385 20096692 -207427886 + AluSg SINE Alu 1 307 -3 2194 101 3 0 chr3 20097382 20097689 -207426889 + AluY SINE Alu 1 308 -3 245 108 246 0 chr3 20097799 20097864 -207426714 - Tigger7 DNA MER2_type -142 2349 2269 2122 117 0 16 chr3 20098098 20098415 -207426163 - AluSq SINE Alu -1 312 1 2060 106 3 13 chr3 20098419 20098720 -207425858 - AluSp SINE Alu -15 298 1 1966 108 10 3 chr3 20098919 20099207 -207425371 - AluSp SINE Alu -23 290 1 255 243 271 7 chr3 20099831 20099975 -207424603 - MIR SINE MIR -10 252 71 322 238 133 66 chr3 20100054 20100235 -207424343 - MIR SINE MIR -47 215 23 1323 78 11 0 chr3 20100400 20100580 -207423998 - AluSg/x SINE Alu 0 310 129 2131 99 3 6 chr3 20100581 20100894 -207423684 - AluSx SINE Alu 0 312 1 30 27 0 0 chr3 20102046 20102083 -207422495 + GC_rich Low_complexity Low_complexity 1 37 0 746 146 0 0 chr3 20102571 20102681 -207421897 + AluJb SINE Alu 4 113 -199 27 0 0 0 chr3 20102693 20102720 -207421858 + AT_rich Low_complexity Low_complexity 1 27 0 1741 154 3 16 chr3 20102996 20103302 -207421276 + AluJo SINE Alu 1 302 -10 229 204 0 0 chr3 20103603 20103652 -207420926 + L1MC/D LINE L1 5779 5827 -517 2115 82 4 4 chr3 20103659 20103961 -207420617 + AluSc SINE Alu 1 302 0 2319 57 3 7 chr3 20104241 20104538 -207420040 + AluY SINE Alu 1 296 -15 1061 238 82 27 chr3 20104642 20105054 -207419524 + L1MC4 LINE L1 7608 8042 0 1734 153 24 0 chr3 20105065 20105353 -207419225 + AluJb SINE Alu 4 298 -14 459 192 81 10 chr3 20105559 20105658 -207418920 - MER57A LTR ERV1 -43 360 255 1202 148 148 34 chr3 20106396 20106517 -207418061 + AluJo SINE Alu 2 108 -204 1769 150 28 3 chr3 20106517 20106804 -207417774 + AluJb SINE Alu 1 294 -18 1202 148 148 34 chr3 20106804 20106945 -207417633 + AluJo SINE Alu 108 294 -18 2139 102 10 0 chr3 20107127 20107431 -207417147 + AluSp SINE Alu 5 311 -2 517 244 109 6 chr3 20107442 20107598 -207416980 - MIR SINE MIR -62 200 29 716 179 108 28 chr3 20107598 20107810 -207416768 - Charlie4 DNA MER1_type 0 1961 1733 456 159 0 0 chr3 20107835 20107904 -207416674 + Tigger2 DNA MER2_type 1 69 -2649 * 2286 144 80 12 chr3 20107888 20108311 -207416267 + Tigger2 DNA MER2_type 2267 2718 0 497 153 214 0 chr3 20108321 20108452 -207416126 - Charlie4 DNA MER1_type -1760 201 43 659 203 31 0 chr3 20108526 20108654 -207415924 + FLAM_A SINE Alu 1 132 -1 1721 269 192 25 chr3 20108657 20109224 -207415354 + L2 LINE L2 2137 2608 -705 2010 122 0 0 chr3 20109224 20109518 -207415060 + AluSg SINE Alu 1 294 -16 1721 269 192 25 chr3 20109518 20109831 -207414747 + L2 LINE L2 2608 2867 -446 1911 116 3 35 chr3 20109831 20110141 -207414437 - AluSx SINE Alu -12 300 1 1721 269 192 25 chr3 20110141 20110261 -207414317 + L2 LINE L2 2867 3288 -25 201 361 124 0 chr3 20110304 20110401 -207414177 + L2 LINE L2 3180 3288 -25 553 285 111 19 chr3 20110730 20110959 -207413619 - MIR SINE MIR -21 241 8 230 303 23 68 chr3 20110975 20111107 -207413471 + MIR3 SINE MIR 72 197 -11 1344 200 89 0 chr3 20111185 20111465 -207413113 + AluJo SINE Alu 1 305 -7 791 212 72 1 chr3 20113329 20113545 -207411033 - L1ME LINE L1 -608 5556 5318 1015 185 28 84 chr3 20113548 20113701 -207410877 + MLT1A2 LTR MaLR 5 165 -209 918 108 0 0 chr3 20113701 20113831 -207410747 + L1PB1 LINE L1 6016 6145 -6 1015 185 28 84 chr3 20113831 20113878 -207410700 + MLT1A2 LTR MaLR 165 213 -161 717 174 8 38 chr3 20113878 20114010 -207410568 + AluJo/FLAM SINE Alu 2 129 -173 2321 90 0 3 chr3 20114010 20114321 -207410257 + AluY SINE Alu 1 310 -1 2255 101 0 0 chr3 20114324 20114630 -207409948 + AluSx SINE Alu 1 306 -6 1015 185 28 84 chr3 20114630 20114837 -207409741 + MLT1A2 LTR MaLR 214 372 -2 814 147 10 113 chr3 20114837 20114885 -207409693 - L1M4b LINE L1 -5333 1526 1475 1833 163 7 0 chr3 20114885 20115191 -207409387 + AluSx SINE Alu 1 308 -4 2117 96 10 7 chr3 20115191 20115492 -207409086 + AluSg SINE Alu 1 302 -8 814 147 10 113 chr3 20115492 20115646 -207408932 - L1M4b LINE L1 -5382 1477 1344 1196 54 0 7 chr3 20115648 20115797 -207408781 + AluSg SINE Alu 1 148 -162 198 0 0 0 chr3 20115904 20115926 -207408652 + (T)n Simple_repeat Simple_repeat 1 22 0 736 138 9 0 chr3 20115932 20116069 -207408509 + AluSg/x SINE Alu 175 312 0 2067 130 18 132 chr3 20116164 20116362 -207408216 - LTR23 LTR ERV1 0 437 218 1954 137 10 3 chr3 20116362 20116661 -207407917 + AluSx SINE Alu 1 301 -11 2067 130 18 132 chr3 20116661 20116746 -207407832 - LTR23 LTR ERV1 -219 218 125 1957 126 10 17 chr3 20116746 20116882 -207407696 + AluJb SINE Alu 1 136 -176 1794 114 99 0 chr3 20116882 20117155 -207407423 + AluSx SINE Alu 1 300 -12 1957 126 10 17 chr3 20117155 20117320 -207407258 + AluJb SINE Alu 136 300 -12 2067 130 18 132 chr3 20117320 20117369 -207407209 - LTR23 LTR ERV1 -312 125 72 2230 100 3 3 chr3 20117369 20117678 -207406900 + AluSc SINE Alu 1 309 0 2067 130 18 132 chr3 20117678 20117756 -207406822 - LTR23 LTR ERV1 -365 72 86 1811 161 3 10 chr3 20117756 20118066 -207406512 - AluJb SINE Alu -4 308 1 2067 130 18 132 chr3 20118066 20118144 -207406434 - LTR23 LTR ERV1 -350 87 2 1491 203 7 7 chr3 20118564 20118695 -207405883 + AluJo SINE Alu 1 131 -181 2088 115 6 13 chr3 20118695 20119008 -207405570 + AluY SINE Alu 1 311 0 1491 203 7 7 chr3 20119008 20119167 -207405411 + AluJo SINE Alu 130 291 -21 2037 120 10 3 chr3 20119416 20119715 -207404863 + AluSx SINE Alu 1 301 -11 2039 104 0 0 chr3 20120048 20120326 -207404252 - AluSg SINE Alu -32 278 1 290 248 182 33 chr3 20120396 20120499 -207404079 + MIR SINE MIR 1 126 -136 2042 99 26 10 chr3 20120499 20120802 -207403776 - AluY SINE Alu -3 308 1 290 248 182 33 chr3 20120802 20120819 -207403759 + MIR SINE MIR 126 139 -123 916 108 0 43 chr3 20121124 20121263 -207403315 + FLAM_C SINE Alu 1 133 0 1579 131 55 24 chr3 20121452 20121743 -207402835 + AluJb SINE Alu 1 300 -12 199 241 138 0 chr3 20121871 20121929 -207402649 - MIR3 SINE MIR -5 203 138 322 269 90 21 chr3 20122051 20122196 -207402382 - HAL1 LINE L1 -1606 901 747 873 218 39 0 chr3 20122196 20122375 -207402203 - MER5A DNA MER1_type 0 189 4 703 219 76 19 chr3 20122435 20122645 -207401933 - HAL1 LINE L1 -1852 655 434 238 246 223 40 chr3 20122667 20122842 -207401736 - HAL1 LINE L1 -2159 348 142 562 236 173 11 chr3 20122947 20123138 -207401440 + MIR SINE MIR 25 246 -16 252 0 0 0 chr3 20123138 20123166 -207401412 + (TG)n Simple_repeat Simple_repeat 2 29 0 2069 132 3 0 chr3 20123167 20123470 -207401108 - AluSx SINE Alu -8 304 1 263 288 0 0 chr3 20123496 20123555 -207401023 - HAL1 LINE L1 -2439 68 10 2147 96 7 0 chr3 20123628 20123930 -207400648 + AluSc SINE Alu 1 304 -5 458 246 49 35 chr3 20123949 20124091 -207400487 - MIR3 SINE MIR -50 158 15 777 209 25 12 chr3 20125323 20125486 -207399092 + FRAM SINE Alu 1 165 -1 1108 103 157 0 chr3 20125520 20125705 -207398873 + L1PB4 LINE L1 5941 6154 -2 267 263 85 34 chr3 20125719 20125837 -207398741 - MIR SINE MIR -120 142 19 21 0 0 0 chr3 20126430 20126451 -207398127 + AT_rich Low_complexity Low_complexity 1 21 0 1285 162 19 76 chr3 20126795 20126902 -207397676 + AluJb SINE Alu 2 114 -198 180 0 0 0 chr3 20126902 20126922 -207397656 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1285 162 19 76 chr3 20126922 20127128 -207397450 + AluJb SINE Alu 114 297 -15 696 156 70 70 chr3 20127274 20127460 -207397118 + MER4-int LTR ERV1 3545 3730 -2868 2187 92 10 0 chr3 20127593 20127897 -207396681 - AluSq SINE Alu -6 307 1 207 0 0 0 chr3 20127904 20127927 -207396651 + (T)n Simple_repeat Simple_repeat 1 23 0 544 149 0 106 chr3 20127934 20128075 -207396503 + MER4-int LTR ERV1 3788 3913 -2685 2071 131 0 0 chr3 20128080 20128386 -207396192 + AluSx SINE Alu 6 311 -1 1723 146 0 4 chr3 20128395 20128669 -207395909 + AluJo SINE Alu 1 273 -39 249 33 0 0 chr3 20128688 20128718 -207395860 + (TAA)n Simple_repeat Simple_repeat 2 31 0 1652 171 10 13 chr3 20128749 20129059 -207395519 - AluJo SINE Alu -3 309 1 729 206 80 150 chr3 20129060 20129512 -207395066 + MER4-int LTR ERV1 4091 4515 -1816 280 67 67 22 chr3 20129512 20129557 -207395021 - AluJo SINE Alu -168 134 88 729 206 80 150 chr3 20129557 20129835 -207394743 + MER4-int LTR ERV1 4515 4811 -1520 1036 168 74 5 chr3 20129836 20130039 -207394539 - AluJb SINE Alu -9 303 87 1767 162 3 10 chr3 20130072 20130386 -207394192 + AluJb SINE Alu 1 312 0 1691 167 3 7 chr3 20130601 20130888 -207393690 - AluJb SINE Alu -26 286 1 23 0 0 0 chr3 20130956 20130979 -207393599 + AT_rich Low_complexity Low_complexity 1 23 0 1423 144 125 4 chr3 20130984 20131248 -207393330 + AluSx SINE Alu 2 297 -15 1185 161 3 110 chr3 20131316 20131417 -207393161 + LTR44 LTR ERV1 1 111 -408 2178 145 23 78 chr3 20131417 20131736 -207392842 + L1MA3 LINE L1 5818 6100 -205 1998 124 0 7 chr3 20131736 20132027 -207392551 - AluSx SINE Alu -23 289 1 2178 145 23 78 chr3 20132027 20132223 -207392355 + L1MA3 LINE L1 6100 6305 0 1185 161 3 110 chr3 20132223 20132269 -207392309 + LTR44 LTR ERV1 111 160 -359 1918 142 0 0 chr3 20132269 20132583 -207391995 - AluSx SINE Alu 0 312 1 1185 161 3 110 chr3 20132583 20132725 -207391853 + LTR44 LTR ERV1 160 260 -259 2743 200 132 66 chr3 20132735 20132889 -207391689 - Charlie2a DNA MER1_type -1227 1635 1493 2420 64 0 0 chr3 20132889 20133186 -207391392 - AluSg SINE Alu -13 297 1 2743 200 132 66 chr3 20133186 20133505 -207391073 - Charlie2a DNA MER1_type -1369 1493 1197 1595 193 23 7 chr3 20133505 20133810 -207390768 + AluJb SINE Alu 1 310 -2 2743 200 132 66 chr3 20133810 20133885 -207390693 - Charlie2a DNA MER1_type -1665 1197 1128 2134 111 7 0 chr3 20133885 20134183 -207390395 - AluSg SINE Alu -10 300 1 2743 200 132 66 chr3 20134183 20134781 -207389797 - Charlie2a DNA MER1_type -1734 1128 411 216 0 0 0 chr3 20134787 20134811 -207389767 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 432 0 0 0 chr3 20134810 20134858 -207389720 + (TG)n Simple_repeat Simple_repeat 1 48 0 2305 76 10 0 chr3 20135095 20135397 -207389181 + AluSp SINE Alu 2 306 -7 763 165 9 0 chr3 20135510 20135625 -207388953 + FLAM_C SINE Alu 3 118 -25 33 25 0 0 chr3 20135625 20135665 -207388913 + AT_rich Low_complexity Low_complexity 1 40 0 2023 130 10 0 chr3 20136176 20136475 -207388103 + AluSx SINE Alu 1 302 -10 283 188 104 42 chr3 20137205 20137301 -207387277 - L1ME4a LINE L1 -70 6051 5950 251 283 58 17 chr3 20137442 20137562 -207387016 - L1ME4a LINE L1 -373 5748 5624 976 134 0 0 chr3 20137562 20137704 -207386874 + AluJb SINE Alu 1 142 -170 767 204 79 0 chr3 20137760 20137912 -207386666 + FAM SINE Alu 1 164 -11 1651 164 45 33 chr3 20137922 20138258 -207386320 - MLT1A1 LTR MaLR -25 340 1 462 256 37 104 chr3 20138258 20138446 -207386132 - L1ME4a LINE L1 -136 5985 5836 2145 114 0 0 chr3 20138446 20138736 -207385842 - AluSx SINE Alu -22 290 1 462 256 37 104 chr3 20138736 20138949 -207385629 - L1ME4a LINE L1 -285 5836 5610 1733 173 123 77 chr3 20139130 20139611 -207384967 + MLT1D LTR MaLR 3 505 0 252 0 0 0 chr3 20139694 20139722 -207384856 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 2097 195 32 64 chr3 20140125 20140264 -207384314 + MER110 LTR ERV1 3 145 -346 2037 107 0 0 chr3 20140264 20140569 -207384009 + AluSx SINE Alu 1 305 0 2097 195 32 64 chr3 20140569 20140642 -207383936 + MER110 LTR ERV1 145 219 -272 1534 138 119 0 chr3 20140642 20140903 -207383675 + AluJb SINE Alu 6 297 -15 2097 195 32 64 chr3 20140903 20141186 -207383392 + MER110 LTR ERV1 219 484 -7 264 184 0 0 chr3 20141186 20141235 -207383343 - FLAM_A SINE Alu -1 132 84 1241 157 5 37 chr3 20141236 20141453 -207383125 - AluJo SINE Alu -94 218 9 2205 109 0 6 chr3 20141456 20141769 -207382809 - AluSx SINE Alu 0 312 2 2206 98 3 0 chr3 20141920 20142225 -207382353 - AluY SINE Alu -5 306 1 256 293 20 20 chr3 20142228 20142327 -207382251 - L1ME4a LINE L1 -508 5613 5515 894 152 76 149 chr3 20142335 20142429 -207382149 - LTR37A LTR ERV1 0 426 327 2185 110 0 3 chr3 20142429 20142739 -207381839 - AluSx SINE Alu -3 309 1 894 152 76 149 chr3 20142739 20142823 -207381755 - LTR37A LTR ERV1 -99 327 238 738 90 8 37 chr3 20142823 20142957 -207381621 + L1MA4 LINE L1 6171 6300 0 894 152 76 149 chr3 20142957 20143172 -207381406 - LTR37A LTR ERV1 -188 238 61 1096 117 0 23 chr3 20143175 20143346 -207381232 + AluSg/x SINE Alu 137 303 -9 2355 68 0 10 chr3 20143529 20143837 -207380741 + AluSp SINE Alu 1 305 -8 26 50 0 0 chr3 20144141 20144181 -207380397 + AT_rich Low_complexity Low_complexity 1 40 0 23 0 0 0 chr3 20144230 20144253 -207380325 + AT_rich Low_complexity Low_complexity 1 23 0 1917 122 57 3 chr3 20144698 20144994 -207379584 - AluSx SINE Alu 0 312 1 339 340 0 0 chr3 20145008 20145102 -207379476 + (CCCA)n Simple_repeat Simple_repeat 3 96 0 352 183 10 10 chr3 20145115 20145219 -207379359 + (TCCA)n Simple_repeat Simple_repeat 4 107 0 1213 141 8 77 chr3 20145250 20145484 -207379094 + MER20 DNA MER1_type 2 219 0 701 163 16 23 chr3 20145575 20145704 -207378874 - FLAM_C SINE Alu -14 129 2 246 273 0 100 chr3 20145709 20145819 -207378759 + MER5B DNA MER1_type 8 106 -72 2347 93 3 0 chr3 20145899 20146211 -207378367 + AluSp SINE Alu 1 313 0 855 207 35 12 chr3 20146341 20146510 -207378068 - MER5B DNA MER1_type -5 173 1 973 136 28 2 chr3 20146599 20146849 -207377729 - AluSq SINE Alu -6 307 2 263 128 0 0 chr3 20146912 20146959 -207377619 - Alu SINE Alu 0 302 256 1097 82 0 14 chr3 20146964 20147111 -207377467 - AluSq SINE Alu -167 145 1 198 209 0 0 chr3 20147234 20147277 -207377301 + (TG)n Simple_repeat Simple_repeat 2 44 0 224 383 25 8 chr3 20147421 20147541 -207377037 - MIR SINE MIR -67 141 20 28 0 0 0 chr3 20147813 20147841 -207376737 + AT_rich Low_complexity Low_complexity 1 28 0 920 121 0 21 chr3 20147841 20147981 -207376597 + FLAM_C SINE Alu 1 137 -6 217 229 0 0 chr3 20148070 20148118 -207376460 + T-rich Low_complexity Low_complexity 1 48 0 847 173 6 26 chr3 20148174 20148330 -207376248 - AluJo SINE Alu -159 153 1 577 277 117 39 chr3 20148434 20148716 -207375862 - LTR16C LTR ERVL -187 304 1 1737 104 10 78 chr3 20148731 20149040 -207375538 + AluSx SINE Alu 1 288 -24 2090 97 0 53 chr3 20149041 20149362 -207375216 + AluSg SINE Alu 1 304 -6 1091 254 42 17 chr3 20149362 20149687 -207374891 - L2 LINE L2 -282 3031 2696 2273 104 0 0 chr3 20150562 20150869 -207373709 - AluSp SINE Alu -6 307 1 183 156 0 0 chr3 20151004 20151036 -207373542 + (CATA)n Simple_repeat Simple_repeat 1 32 0 236 152 0 0 chr3 20151053 20151099 -207373479 + LTR66 LTR ERVL 394 439 -171 235 116 0 0 chr3 20151108 20151151 -207373427 - LTR66 LTR ERVL -174 436 394 363 258 119 60 chr3 20151173 20151203 -207373375 - L1ME4a LINE L1 -157 5964 5937 1620 173 24 0 chr3 20151203 20151498 -207373080 - AluJo SINE Alu -10 302 1 363 258 119 60 chr3 20151498 20151618 -207372960 - L1ME4a LINE L1 -184 5937 5805 230 227 67 88 chr3 20151621 20151815 -207372763 + L1MC4 LINE L1 7837 8026 -16 311 219 68 82 chr3 20151858 20152004 -207372574 - L1ME4a LINE L1 -342 5779 5636 331 250 176 16 chr3 20152131 20152319 -207372259 - L1ME4a LINE L1 -694 5476 5259 526 200 50 61 chr3 20153410 20153590 -207370988 - MIR SINE MIR -81 181 4 466 330 34 11 chr3 20153734 20153910 -207370668 + MIR SINE MIR 4 183 -79 24 0 0 0 chr3 20155866 20155890 -207368688 + AT_rich Low_complexity Low_complexity 1 24 0 497 262 16 0 chr3 20156393 20156515 -207368063 - MIR SINE MIR -116 146 23 2072 119 3 0 chr3 20157760 20158055 -207366523 - AluSq SINE Alu -16 297 2 1563 169 32 3 chr3 20158065 20158349 -207366229 - AluJo SINE Alu -20 292 1 2284 91 0 0 chr3 20158462 20158759 -207365819 - AluSx SINE Alu -15 297 1 227 182 13 91 chr3 20158764 20158841 -207365737 - L1ME LINE L1 -387 5734 5664 523 269 71 120 chr3 20158904 20159089 -207365489 + L2 LINE L2 2887 3080 -233 1808 146 31 0 chr3 20159089 20159376 -207365202 + AluSx SINE Alu 1 296 -16 523 269 71 120 chr3 20159376 20159465 -207365113 + L2 LINE L2 3080 3172 -141 783 209 126 0 chr3 20159465 20159647 -207364931 + MER3 DNA MER1_type 2 206 -3 523 269 71 120 chr3 20159647 20159820 -207364758 + L2 LINE L2 3172 3313 0 676 128 0 0 chr3 20159838 20159940 -207364638 - U13 snRNA snRNA -2 102 1 2058 121 7 0 chr3 20160597 20160895 -207363683 + AluSx SINE Alu 1 300 -12 400 290 86 6 chr3 20161171 20161333 -207363245 - MIR3 SINE MIR -3 205 31 1713 135 20 13 chr3 20161632 20161935 -207362643 + AluJo SINE Alu 3 307 -5 1998 117 0 26 chr3 20162046 20162354 -207362224 + AluSg SINE Alu 1 300 -10 1754 156 7 3 chr3 20162467 20162768 -207361810 - AluSx SINE Alu -10 302 1 268 203 69 0 chr3 20163073 20163153 -207361425 - L1ME LINE L1 -340 5781 5698 476 289 39 6 chr3 20163333 20163489 -207361089 - MIR SINE MIR -5 257 97 2084 98 28 0 chr3 20163489 20163775 -207360803 + AluSx SINE Alu 1 294 -18 985 128 14 0 chr3 20163775 20163923 -207360655 + AluSg/x SINE Alu 134 283 -29 218 336 18 35 chr3 20163931 20164042 -207360536 - MIR SINE MIR -145 117 9 221 213 13 120 chr3 20164042 20164117 -207360461 + MER5A DNA MER1_type 1 67 -122 540 250 26 0 chr3 20164171 20164287 -207360291 + MER5A DNA MER1_type 71 189 0 593 266 77 14 chr3 20164477 20164716 -207359862 - L1ME LINE L1 -556 5610 5358 492 293 26 0 chr3 20164879 20164995 -207359583 - MER5A DNA MER1_type 0 189 71 9894 62 5 41 chr3 20165034 20166462 -207358116 + SVA Other Other 1 1377 -9 25 0 0 0 chr3 20166462 20166487 -207358091 + AT_rich Low_complexity Low_complexity 1 25 0 225 321 42 54 chr3 20167131 20167299 -207357279 + L2 LINE L2 2894 3059 -213 1188 144 18 168 chr3 20167374 20167555 -207357023 - MER33 DNA MER1_type -2261 324 118 1031 181 0 0 chr3 20167555 20167721 -207356857 - FRAM SINE Alu 0 166 1 1188 144 18 168 chr3 20167721 20167786 -207356792 - MER33 DNA MER1_type -2467 118 151 2113 135 127 16 chr3 20167786 20168171 -207356407 + MSTA LTR MaLR 1 428 0 1188 144 18 168 chr3 20168171 20168304 -207356274 - MER33 DNA MER1_type -2433 152 1 7996 54 1 0 chr3 20168850 20169815 -207354763 + LTR5 LTR ERVK 1 966 -3 853 264 23 0 chr3 20169859 20170079 -207354499 - MIR SINE MIR -21 241 17 2076 124 29 10 chr3 20171583 20171889 -207352689 - AluSx SINE Alu 0 312 1 2332 98 17 0 chr3 20172216 20172513 -207352065 - AluSx SINE Alu -10 302 1 2075 141 3 3 chr3 20173753 20174052 -207350526 - AluJo SINE Alu -13 299 1 1578 201 31 28 chr3 20174054 20174412 -207350166 + MLT1A2 LTR MaLR 8 366 -8 1887 176 0 3 chr3 20175676 20175978 -207348600 + AluJo SINE Alu 1 301 -11 358 223 53 11 chr3 20176008 20176102 -207348476 - MIR SINE MIR -10 252 155 425 209 22 0 chr3 20176760 20176851 -207347727 + L1ME4a LINE L1 5520 5612 -509 472 278 311 13 chr3 20176859 20177158 -207347420 + L1ME4a LINE L1 5728 6115 -6 1909 177 3 0 chr3 20177174 20177485 -207347093 - AluJb SINE Alu 0 312 1 2205 114 7 0 chr3 20177609 20177899 -207346679 - AluSx SINE Alu -16 296 5 1040 148 50 120 chr3 20177903 20178092 -207346486 + LTR37B LTR ERV1 135 289 -179 1874 179 10 3 chr3 20178092 20178400 -207346178 - AluJb SINE Alu -2 310 1 1040 148 50 120 chr3 20178400 20178569 -207346009 + LTR37B LTR ERV1 289 468 0 343 68 0 0 chr3 20178737 20178781 -207345797 + Alu SINE Alu 1 44 -258 355 246 53 9 chr3 20178881 20178995 -207345583 + L1M4c LINE L1 1667 1785 -4599 1946 156 0 31 chr3 20179007 20179183 -207345395 - AluJb SINE Alu -2 310 147 2308 97 3 31 chr3 20179183 20179504 -207345074 - AluSp SINE Alu -1 312 1 1946 156 0 31 chr3 20179504 20179647 -207344931 - AluJb SINE Alu -165 147 1 325 167 83 42 chr3 20179647 20179719 -207344859 - L1M4 LINE L1 -6465 77 3 622 225 62 0 chr3 20179748 20179877 -207344701 - AluJo SINE Alu -175 137 1 323 178 47 116 chr3 20180039 20180082 -207344496 - L1M4c LINE L1 -4688 1696 1652 2300 95 3 3 chr3 20180082 20180387 -207344191 - AluY SINE Alu -6 305 1 323 178 47 116 chr3 20180387 20180430 -207344148 - L1M4c LINE L1 -4732 1652 1619 1931 158 7 10 chr3 20180430 20180740 -207343838 - AluJo SINE Alu -3 309 1 323 178 47 116 chr3 20180740 20180781 -207343797 - L1M4c LINE L1 -4765 1619 1577 2400 84 10 0 chr3 20180785 20181081 -207343497 - AluSx SINE Alu -13 299 1 983 172 10 66 chr3 20181336 20181364 -207343214 + AluSg/x SINE Alu 117 145 -167 2568 54 0 0 chr3 20181364 20181661 -207342917 + AluY SINE Alu 1 297 -14 983 172 10 66 chr3 20181661 20181830 -207342748 + AluSg/x SINE Alu 145 303 -9 352 173 86 0 chr3 20181840 20181921 -207342657 - L1ME LINE L1 -468 5702 5615 443 200 0 21 chr3 20181952 20182047 -207342531 + MER69 DNA AcHobo 2432 2524 -2 322 240 89 24 chr3 20182206 20182338 -207342240 + LTR33A LTR ERVL 50 155 -368 1754 128 4 0 chr3 20183138 20183389 -207341189 - AluSx SINE Alu -19 293 42 1543 273 61 25 chr3 20183397 20183995 -207340583 + L1M4 LINE L1 3622 4250 -1896 1737 162 3 11 chr3 20183995 20184279 -207340299 + AluJo SINE Alu 27 308 -4 1543 273 61 25 chr3 20184279 20184373 -207340205 + L1M4 LINE L1 4250 4339 -1807 792 214 21 16 chr3 20184424 20184616 -207339962 + AluJo SINE Alu 120 312 0 1987 76 0 0 chr3 20184623 20184859 -207339719 + AluSq SINE Alu 1 236 -77 466 231 85 8 chr3 20184922 20185052 -207339526 - L1ME1 LINE L1 -253 5913 5774 224 58 13 142 chr3 20185155 20185310 -207339268 + (TA)n Simple_repeat Simple_repeat 1 135 0 305 116 14 82 chr3 20185379 20185525 -207339053 + (TA)n Simple_repeat Simple_repeat 1 136 0 2141 116 0 0 chr3 20185525 20185810 -207338768 - AluSx SINE Alu -27 285 1 1221 148 76 17 chr3 20185841 20186077 -207338501 + AluJo SINE Alu 41 290 -22 1018 183 0 0 chr3 20186403 20186572 -207338006 + AluJo SINE Alu 127 295 -17 2404 105 0 10 chr3 20186574 20186888 -207337690 + AluSx SINE Alu 1 311 -1 2328 64 7 7 chr3 20186888 20187196 -207337382 + AluY SINE Alu 1 308 0 279 71 0 214 chr3 20188694 20188746 -207335832 + AluJ/FRAM SINE Alu 232 261 -41 1988 141 18 0 chr3 20188746 20189030 -207335548 - AluSx SINE Alu -23 289 1 279 71 0 214 chr3 20189030 20189061 -207335517 + AluJ/FRAM SINE Alu 261 297 -5 2129 180 45 47 chr3 20189061 20189164 -207335414 + L1MB8 LINE L1 5325 5427 -757 2267 106 0 0 chr3 20189164 20189456 -207335122 + AluSg SINE Alu 1 292 -18 2129 180 45 47 chr3 20189456 20189636 -207334942 + L1MB8 LINE L1 5427 5606 -578 1903 129 18 7 chr3 20189636 20189949 -207334629 + AluSx SINE Alu 1 316 0 2129 180 45 47 chr3 20189949 20190024 -207334554 + L1MB8 LINE L1 5606 5680 -504 2132 215 11 9 chr3 20190024 20190466 -207334112 + LTR47B LTR ERVL 1 443 0 2129 180 45 47 chr3 20190466 20190655 -207333923 + L1MB8 LINE L1 5680 5874 -310 943 158 0 7 chr3 20190659 20190798 -207333780 + FAM SINE Alu 13 150 -35 1982 121 0 7 chr3 20190827 20191100 -207333478 + AluSx SINE Alu 1 271 -41 389 311 0 0 chr3 20191107 20191197 -207333381 - L1MC4 LINE L1 -1339 6703 6614 * 395 296 0 0 chr3 20191126 20191214 -207333364 + L1MC4 LINE L1 6615 6702 -1340 539 221 135 0 chr3 20191256 20191473 -207333105 + L1MB8 LINE L1 5902 6166 -17 575 257 47 69 chr3 20191514 20191790 -207332788 - MLT1I LTR MaLR -28 381 112 2333 124 0 0 chr3 20192066 20192372 -207332206 - AluSx SINE Alu -6 306 1 2391 109 0 0 chr3 20192372 20192675 -207331903 - AluSx SINE Alu -8 304 2 381 294 5 64 chr3 20192676 20192863 -207331715 - L1MCc LINE L1 -5578 845 670 1316 151 22 30 chr3 20193139 20193371 -207331207 - AluJb SINE Alu 0 312 83 996 271 57 8 chr3 20193374 20193740 -207330838 - L1MCc LINE L1 -5999 424 41 305 300 58 9 chr3 20193775 20194037 -207330541 + L1M4 LINE L1 5120 5399 -747 1868 162 10 3 chr3 20194037 20194327 -207330251 + AluJo SINE Alu 3 294 -18 2241 121 0 0 chr3 20194502 20194792 -207329786 + AluSx SINE Alu 1 290 -22 393 236 136 61 chr3 20194860 20195124 -207329454 + L1MCb LINE L1 973 1248 -4856 1798 180 0 7 chr3 20195138 20195427 -207329151 + AluJo SINE Alu 1 287 -25 1127 216 98 36 chr3 20195451 20195608 -207328970 + L1MCb LINE L1 2767 2913 -3651 2413 60 0 17 chr3 20195608 20195909 -207328669 + AluY SINE Alu 1 296 -15 1127 216 98 36 chr3 20195909 20196139 -207328439 + L1MCb LINE L1 2913 3178 -3386 889 196 0 7 chr3 20196139 20196292 -207328286 + FRAM SINE Alu 1 146 -30 550 209 37 52 chr3 20196323 20196514 -207328064 + L1MCb LINE L1 3189 3376 -3188 1596 168 0 93 chr3 20196514 20196847 -207327731 + AluJb SINE Alu 1 302 0 1512 109 52 0 chr3 20196912 20197122 -207327456 + AluSc SINE Alu 83 303 -6 1559 167 4 4 chr3 20197123 20197375 -207327203 + AluJo SINE Alu 25 276 -36 1350 22 11 17 chr3 20197390 20197569 -207327009 + (GGAGAA)n Simple_repeat Simple_repeat 3 180 0 287 175 0 16 chr3 20197578 20197641 -207326937 + GA-rich Low_complexity Low_complexity 2 63 0 669 158 17 85 chr3 20197647 20197778 -207326800 + L1ME LINE L1 5358 5476 -690 2390 91 0 3 chr3 20197778 20198074 -207326504 + AluSq SINE Alu 3 297 -16 669 158 17 85 chr3 20198074 20198119 -207326459 + L1ME LINE L1 5476 5522 -644 699 98 0 10 chr3 20198225 20198327 -207326251 + AluSg/x SINE Alu 206 306 -4 2337 105 0 0 chr3 20198337 20198632 -207325946 + AluSx SINE Alu 1 295 -17 631 157 56 0 chr3 20198643 20198751 -207325827 + AluJb SINE Alu 177 290 -22 2270 109 10 0 chr3 20198767 20199069 -207325509 - AluSx SINE Alu -5 307 3 4785 220 71 67 chr3 20199069 20199121 -207325457 - L1M4b LINE L1 -5253 1606 1556 1906 170 0 13 chr3 20199121 20199427 -207325151 - AluJb SINE Alu -10 302 1 4785 220 71 67 chr3 20199427 20200034 -207324544 - L1M4b LINE L1 -5303 1556 953 2285 119 7 0 chr3 20200034 20200344 -207324234 - AluSx SINE Alu 0 312 1 4785 220 71 67 chr3 20200344 20201177 -207323401 - L1M4b LINE L1 -5906 953 107 180 0 0 0 chr3 20201177 20201197 -207323381 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2257 89 25 0 chr3 20201200 20201482 -207323096 - AluSx SINE Alu -23 289 1 972 185 0 0 chr3 20201486 20201643 -207322935 - FRAM SINE Alu -19 157 1 531 111 0 0 chr3 20201783 20201855 -207322723 + AluS SINE Alu 2 73 -239 222 270 48 0 chr3 20201855 20201918 -207322660 + L2 LINE L2 3242 3307 -6 1768 181 11 0 chr3 20202188 20202475 -207322103 - AluJb SINE Alu -8 304 15 461 289 132 18 chr3 20202504 20202777 -207321801 - LTR16A LTR ERVL -77 373 70 274 251 212 40 chr3 20202843 20203100 -207321478 - L2 LINE L2 -297 3016 2719 529 122 24 0 chr3 20203448 20203530 -207321048 + AluJ/FLAM SINE Alu 5 88 -224 596 180 108 0 chr3 20203630 20203741 -207320837 - FLAM_C SINE Alu -20 123 1 1525 150 0 0 chr3 20203814 20204034 -207320544 + AluSx SINE Alu 49 268 -44 2537 43 10 0 chr3 20204042 20204371 -207320207 + AluY SINE Alu 1 311 0 495 258 26 26 chr3 20205884 20206039 -207318539 - MIR3 SINE MIR 0 208 54 528 16 0 0 chr3 20206116 20206177 -207318401 + (GGAA)n Simple_repeat Simple_repeat 1 61 0 1296 251 151 37 chr3 20206177 20206336 -207318242 - L2 LINE L2 -438 2876 2737 1740 201 10 0 chr3 20206336 20206634 -207317944 - AluJo SINE Alu -11 301 1 1296 251 151 37 chr3 20206634 20206860 -207317718 - L2 LINE L2 -577 2737 2538 2278 124 3 0 chr3 20206860 20207167 -207317411 + AluSq SINE Alu 1 308 -5 1296 251 151 37 chr3 20207167 20207297 -207317281 - L2 LINE L2 -776 2538 2301 1282 98 11 6 chr3 20207331 20207514 -207317064 - MER83-int LTR ERV1 -4089 196 13 3237 103 11 5 chr3 20207515 20207960 -207316618 - MER83 LTR ERV1 0 448 1 854 162 57 72 chr3 20208012 20208277 -207316301 + L1M4 LINE L1 4115 4375 -1771 3082 145 40 23 chr3 20208284 20208609 -207315969 + L1MC1 LINE L1 5523 5864 -469 2310 117 7 0 chr3 20208609 20208918 -207315660 + AluSx SINE Alu 1 311 -1 3082 145 40 23 chr3 20208918 20209165 -207315413 + L1MC1 LINE L1 5864 6105 -228 2110 138 0 0 chr3 20209165 20209461 -207315117 + AluJb SINE Alu 1 296 -16 189 0 0 0 chr3 20209464 20209485 -207315093 + (CA)n Simple_repeat Simple_repeat 2 22 0 987 150 31 171 chr3 20209485 20209558 -207315020 + L1M4 LINE L1 4378 4460 -1686 2333 105 3 0 chr3 20209558 20209853 -207314725 + AluSp SINE Alu 1 296 -17 987 150 31 171 chr3 20209853 20209957 -207314621 + L1M4 LINE L1 4460 4577 -1569 2425 55 3 14 chr3 20209957 20210249 -207314329 + AluY SINE Alu 10 298 -13 987 150 31 171 chr3 20210249 20210291 -207314287 + L1M4 LINE L1 4577 4623 -1523 2036 153 0 7 chr3 20210291 20210592 -207313986 + AluJb SINE Alu 1 299 -13 987 150 31 171 chr3 20210592 20210790 -207313788 + L1M4 LINE L1 4623 4738 -1408 761 150 0 8 chr3 20210811 20210931 -207313647 + AluJo/FLAM SINE Alu 8 126 -186 1066 426 28 3 chr3 20210933 20211246 -207313332 + AluY SINE Alu 2 321 0 1192 151 4 84 chr3 20211328 20211601 -207312977 + AluJb SINE Alu 64 312 0 2178 81 12 59 chr3 20211712 20212032 -207312546 + AluY SINE Alu 1 305 -6 269 268 14 0 chr3 20212049 20212120 -207312458 + MIR SINE MIR 156 227 -35 234 369 16 25 chr3 20212532 20212654 -207311924 + L3 LINE CR1 654 774 -803 555 265 94 26 chr3 20212870 20213202 -207311376 + MER115 DNA AcHobo 123 548 -145 451 332 46 76 chr3 20213391 20213852 -207310726 + L3 LINE CR1 1128 1574 -3 185 290 58 29 chr3 20214285 20214354 -207310224 + MIR3 SINE MIR 86 156 -52 239 328 188 0 chr3 20214947 20215075 -207309503 - L2 LINE L2 0 3313 3162 902 239 39 9 chr3 20215100 20215330 -207309248 + MIR SINE MIR 13 249 -13 2431 99 0 3 chr3 20215331 20215644 -207308934 - AluSx SINE Alu 0 312 1 590 315 98 31 chr3 20215784 20216111 -207308467 - MLT1L LTR MaLR -82 533 185 904 154 0 0 chr3 20216114 20216250 -207308328 + AluJo SINE Alu 1 136 -176 2064 112 14 10 chr3 20216259 20216577 -207308001 + AluSq SINE Alu 1 313 0 234 237 34 0 chr3 20216577 20216636 -207307942 - MLT1L LTR MaLR -423 192 132 665 296 40 10 chr3 20216746 20216945 -207307633 - L2 LINE L2 -257 3056 2852 629 169 63 14 chr3 20217206 20217348 -207307230 - MER3 DNA MER1_type -87 122 21 2138 152 3 0 chr3 20217410 20217720 -207306858 - AluSx SINE Alu -1 311 1 1812 123 0 0 chr3 20217860 20218112 -207306466 - AluSx SINE Alu -19 293 42 2098 99 3 27 chr3 20218275 20218567 -207306011 + AluSg SINE Alu 5 289 -21 257 257 76 100 chr3 20219460 20219670 -207304908 - L2 LINE L2 -127 3145 2941 1945 128 3 44 chr3 20219723 20219862 -207304716 + AluSq SINE Alu 1 144 -169 2416 86 0 7 chr3 20219862 20220165 -207304413 + AluSx SINE Alu 1 301 -11 1945 128 3 44 chr3 20220165 20220345 -207304233 + AluSq SINE Alu 144 307 -6 645 152 0 0 chr3 20220930 20221029 -207303549 + AluJo SINE Alu 36 134 -178 281 345 9 26 chr3 20221565 20221678 -207302900 - MIR SINE MIR -21 241 131 582 125 0 0 chr3 20221718 20221806 -207302772 + HY3 scRNA scRNA 11 98 -3 238 255 51 31 chr3 20221933 20222031 -207302547 - MIR3 SINE MIR -51 157 58 260 265 15 15 chr3 20222655 20222723 -207301855 - L2 LINE L2 -14 3299 3232 2349 96 0 22 chr3 20222754 20223067 -207301511 + AluSx SINE Alu 1 306 -6 1779 174 10 26 chr3 20223180 20223490 -207301088 + AluJb SINE Alu 1 305 -7 189 338 44 0 chr3 20223769 20223837 -207300741 - MIR SINE MIR -55 153 83 863 169 12 24 chr3 20224059 20224225 -207300353 - MER58B DNA MER1_type -11 330 167 2394 51 41 3 chr3 20224248 20224541 -207300037 + AluY SINE Alu 1 304 -7 1933 163 0 13 chr3 20225301 20225608 -207298970 + AluJb SINE Alu 1 303 -9 2266 103 10 0 chr3 20225612 20225913 -207298665 + AluSq SINE Alu 1 304 -9 1661 128 0 4 chr3 20226014 20226241 -207298337 - AluSx SINE Alu -86 226 1 284 298 39 19 chr3 20226735 20226839 -207297739 + L2 LINE L2 3189 3294 -19 1069 56 0 0 chr3 20227330 20227455 -207297123 - AluSg/x SINE Alu -16 294 170 2376 86 3 13 chr3 20227457 20227761 -207296817 - AluSq SINE Alu -12 301 1 293 330 94 18 chr3 20228461 20228685 -207295893 + L1MEd LINE L1 565 805 -5314 194 359 29 19 chr3 20228955 20229058 -207295520 + L2 LINE L2 2946 3049 -223 333 257 68 0 chr3 20229068 20229142 -207295436 + L1MC4 LINE L1 6614 6692 -1350 2368 103 7 0 chr3 20229144 20229446 -207295132 - AluSx SINE Alu -8 304 1 2536 57 0 0 chr3 20229459 20229756 -207294822 - AluY SINE Alu -14 297 1 390 239 65 77 chr3 20229820 20229975 -207294603 + L2 LINE L2 3143 3295 -18 1743 178 0 3 chr3 20229975 20230267 -207294311 - 7SLRNA srpRNA srpRNA -7 313 23 1875 136 14 34 chr3 20230325 20230620 -207293958 - AluSx SINE Alu -23 289 1 2452 77 0 0 chr3 20230628 20230926 -207293652 - AluSc SINE Alu -11 298 1 1755 191 38 46 chr3 20230956 20231349 -207293229 + MLT1B LTR MaLR 1 390 0 1668 85 0 0 chr3 20231394 20231630 -207292948 + AluSg/x SINE Alu 83 318 0 1668 165 48 7 chr3 20231639 20231934 -207292644 + AluJb SINE Alu 1 306 0 1941 129 7 4 chr3 20233288 20233609 -207290969 - AluSx SINE Alu 0 327 6 1445 159 4 4 chr3 20237490 20237717 -207286861 + AluJb SINE Alu 1 227 -85 501 212 10 0 chr3 20237730 20237829 -207286749 - MER3 DNA MER1_type -109 100 1 183 219 24 0 chr3 20237839 20237880 -207286698 + MIR3 SINE MIR 166 207 -1 228 234 262 35 chr3 20238130 20238275 -207286303 + MLT1K LTR MaLR 389 566 -22 330 208 139 5 chr3 20238606 20238708 -207285870 + MIR SINE MIR 45 154 -68 367 200 25 83 chr3 20238840 20238908 -207285670 - MIR SINE MIR -103 159 98 2217 79 3 38 chr3 20238908 20239232 -207285346 + AluSq SINE Alu 1 314 0 367 200 25 83 chr3 20239232 20239282 -207285296 - MIR SINE MIR -164 98 47 594 262 134 15 chr3 20241189 20241586 -207282992 - L1ME LINE L1 -547 5623 5177 1344 168 11 120 chr3 20241588 20241841 -207282737 - L1MD2 LINE L1 0 8042 7763 2065 125 35 0 chr3 20241841 20242129 -207282449 - AluSq SINE Alu -15 298 1 1344 168 11 120 chr3 20242129 20242287 -207282291 - L1MD2 LINE L1 -279 7763 6244 1560 124 68 0 chr3 20242288 20242537 -207282041 + MER1B DNA MER1_type 73 338 -1 1609 191 110 23 chr3 20242601 20243072 -207281506 - L1MC4 LINE L1 -406 7636 7125 2106 116 3 7 chr3 20243072 20243374 -207281204 - AluSg SINE Alu -9 301 1 596 172 33 46 chr3 20243375 20243526 -207281052 - MLT1C LTR MaLR -318 149 1 804 254 35 66 chr3 20243549 20243816 -207280762 - L1ME LINE L1 -1194 4952 4699 1873 179 7 0 chr3 20243816 20244117 -207280461 + AluJo SINE Alu 1 303 -9 804 254 35 66 chr3 20244117 20244243 -207280335 - L1ME LINE L1 -1447 4699 4571 1713 243 48 50 chr3 20244570 20245222 -207279356 + L2 LINE L2 2683 3312 -1 2097 85 3 25 chr3 20245257 20245540 -207279038 - AluSx SINE Alu -2 310 34 268 293 49 24 chr3 20245542 20245665 -207278913 + MIR3 SINE MIR 61 186 -22 452 131 20 91 chr3 20245937 20246036 -207278542 + MLT1B LTR MaLR 1 92 -298 985 167 23 0 chr3 20246039 20246213 -207278365 + MLT1B LTR MaLR 213 390 0 2155 133 3 0 chr3 20246837 20247139 -207277439 - AluSx SINE Alu -9 303 1 1735 141 47 10 chr3 20247145 20247526 -207277052 - L1MB3 LINE L1 -44 6139 5688 2111 127 3 16 chr3 20247689 20248004 -207276574 - AluJb SINE Alu 0 312 2 450 260 59 76 chr3 20248070 20248374 -207276204 + L2 LINE L2 2377 2675 -639 861 87 8 31 chr3 20248394 20248521 -207276057 - AluSg/x SINE Alu -20 290 167 2329 86 3 0 chr3 20250643 20250935 -207273643 - AluSp SINE Alu 0 313 21 2592 68 3 0 chr3 20251011 20251321 -207273257 - AluY SINE Alu 0 311 1 257 244 26 13 chr3 20251844 20251922 -207272656 + L2 LINE L2 3235 3313 0 2451 48 42 0 chr3 20252521 20252810 -207271768 + AluY SINE Alu 1 301 -10 2365 95 3 0 chr3 20253100 20253396 -207271182 - AluSp SINE Alu -16 297 1 1084 104 0 0 chr3 20253396 20253531 -207271047 - AluSq/x SINE Alu -177 135 1 459 159 26 80 chr3 20253532 20253645 -207270933 - L1MB3 LINE L1 -730 5436 5330 2438 92 0 0 chr3 20253646 20253949 -207270629 - AluSc SINE Alu -6 303 1 1390 195 108 0 chr3 20253950 20254273 -207270305 - L1MB3 LINE L1 -1814 4332 3975 425 253 165 6 chr3 20254280 20254438 -207270140 - L1MEc LINE L1 -5919 477 295 2378 85 0 0 chr3 20254440 20254735 -207269843 - AluY SINE Alu 0 311 17 405 142 142 108 chr3 20254876 20254956 -207269622 - L2 LINE L2 0 3313 3226 1935 159 3 3 chr3 20254956 20255246 -207269332 + AluSx SINE Alu 1 290 -22 405 142 142 108 chr3 20255246 20255285 -207269293 - L2 LINE L2 -87 3226 3190 2266 125 0 3 chr3 20255724 20256027 -207268551 - AluSx SINE Alu -10 302 1 1633 152 30 43 chr3 20256846 20257149 -207267429 + AluJo SINE Alu 1 299 -13 416 289 76 41 chr3 20257566 20257763 -207266815 + MIR SINE MIR 2 205 -57 1219 195 25 12 chr3 20257764 20258005 -207266573 - AluJb SINE Alu -6 306 63 276 26 0 0 chr3 20258011 20258049 -207266529 + L1MA1 LINE L1 6263 6300 -2 * 1976 111 49 59 chr3 20258044 20258226 -207266352 - L1MA3 LINE L1 -35 6270 6088 2225 113 3 0 chr3 20258226 20258526 -207266052 - AluSq SINE Alu -12 301 1 1976 111 49 59 chr3 20258526 20258731 -207265847 - L1MA3 LINE L1 -217 6088 5887 208 178 68 82 chr3 20258807 20258880 -207265698 - MIR SINE MIR -67 195 124 1202 163 9 40 chr3 20258890 20259117 -207265461 + AluJo SINE Alu 1 220 -92 2524 66 0 3 chr3 20259120 20259425 -207265153 + AluY SINE Alu 1 304 -7 1830 104 0 0 chr3 20259425 20259655 -207264923 + AluSg/x SINE Alu 71 301 -9 824 190 63 0 chr3 20259655 20259813 -207264765 + AluJo/FRAM SINE Alu 135 302 -10 572 165 0 10 chr3 20260427 20260524 -207264054 + FLAM_C SINE Alu 37 132 -11 1667 179 29 15 chr3 20260528 20260837 -207263741 + AluJo SINE Alu 5 317 0 833 250 52 35 chr3 20260855 20261097 -207263481 + MIR SINE MIR 7 248 -14 1781 184 7 0 chr3 20261459 20261747 -207262831 - AluJo SINE Alu -22 290 1 1735 167 10 27 chr3 20261749 20262048 -207262530 - AluJo SINE Alu -18 294 1 205 191 21 0 chr3 20262057 20262104 -207262474 + (TTG)n Simple_repeat Simple_repeat 1 48 0 1306 179 120 18 chr3 20262421 20262695 -207261883 - AluJo SINE Alu -8 304 3 2245 127 0 0 chr3 20262707 20263014 -207261564 - AluSx SINE Alu -5 307 1 336 266 82 32 chr3 20263090 20263216 -207261362 - L1MC4 LINE L1 -152 7890 7649 180 0 0 0 chr3 20263328 20263348 -207261230 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1212 177 68 32 chr3 20263356 20263605 -207260973 - AluJb SINE Alu -54 258 1 320 231 160 58 chr3 20263607 20263763 -207260815 - L1MC5 LINE L1 -441 7520 7349 755 161 8 0 chr3 20264070 20264200 -207260378 - FLAM_C SINE Alu -2 131 1 2235 126 0 3 chr3 20265853 20266155 -207258423 + AluSx SINE Alu 1 301 -11 2780 116 27 44 chr3 20266166 20266205 -207258373 - Tigger1 DNA MER2_type -1927 491 453 1456 174 10 69 chr3 20266205 20266510 -207258068 + AluJo SINE Alu 12 298 -14 2780 116 27 44 chr3 20266510 20266946 -207257632 - Tigger1 DNA MER2_type -1965 453 24 1918 173 3 0 chr3 20267230 20267530 -207257048 - AluJb SINE Alu -11 301 1 2763 166 126 12 chr3 20267531 20268109 -207256469 - L1M4c LINE L1 -5733 651 8 252 323 58 39 chr3 20268321 20268476 -207256102 + MIR3 SINE MIR 3 160 -48 1787 163 31 0 chr3 20268481 20268775 -207255803 - AluJo SINE Alu -9 303 1 322 206 32 95 chr3 20268868 20268994 -207255584 + MIR3 SINE MIR 90 207 -1 2324 114 0 0 chr3 20269230 20269538 -207255040 - AluSp SINE Alu -4 309 2 298 22 65 0 chr3 20269538 20269584 -207254994 + T-rich Low_complexity Low_complexity 2 50 0 2368 67 3 0 chr3 20269584 20269866 -207254712 - AluY SINE Alu -28 283 1 2000 144 0 26 chr3 20269866 20270172 -207254406 - AluJb SINE Alu -14 298 1 252 184 114 53 chr3 20270283 20270397 -207254181 - MER113 DNA MER1_type? -400 121 1 2098 127 0 0 chr3 20270942 20271245 -207253333 - AluSx SINE Alu 0 303 1 21 0 0 0 chr3 20271542 20271563 -207253015 + AT_rich Low_complexity Low_complexity 1 21 0 2326 104 3 0 chr3 20271817 20272115 -207252463 - AluSx SINE Alu -8 304 6 2236 116 0 13 chr3 20272142 20272307 -207252271 - AluSx SINE Alu -14 298 137 2347 84 23 3 chr3 20272307 20272606 -207251972 - AluSc SINE Alu -4 305 1 1376 140 0 5 chr3 20272606 20272742 -207251836 - AluSx SINE Alu -177 135 1 2236 116 0 13 chr3 20272606 20272742 -207251836 - AluSx SINE Alu -175 137 1 2400 105 0 3 chr3 20272779 20273093 -207251485 - AluSq SINE Alu 0 313 1 1895 159 6 16 chr3 20273397 20273712 -207250866 + AluJo SINE Alu 1 312 0 2044 101 7 4 chr3 20274378 20274655 -207249923 + AluSc SINE Alu 1 278 -31 234 0 0 0 chr3 20274658 20274684 -207249894 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 204 344 16 0 chr3 20274694 20274755 -207249823 - MIR SINE MIR -117 91 30 505 216 24 8 chr3 20274826 20274951 -207249627 + Charlie5 DNA MER1_type 7 133 -2479 * 1932 143 58 0 chr3 20274947 20275310 -207249268 + Charlie5 DNA MER1_type 2241 2624 0 181 326 93 0 chr3 20275782 20275868 -207248710 - MIR3 SINE MIR -1 207 114 2443 97 0 0 chr3 20278812 20279122 -207245456 + AluSx SINE Alu 1 310 -2 201 74 0 0 chr3 20280532 20280559 -207244019 + (TG)n Simple_repeat Simple_repeat 1 27 0 1872 146 0 14 chr3 20280616 20280896 -207243682 - AluJb SINE Alu -18 294 19 617 221 0 8 chr3 20280933 20281055 -207243523 - FLAM_A SINE Alu -4 138 18 1942 150 3 35 chr3 20281086 20281228 -207243350 + AluJb SINE Alu 1 146 -166 2198 108 0 0 chr3 20281228 20281551 -207243027 + AluSx SINE Alu 1 323 0 1942 150 3 35 chr3 20281551 20281720 -207242858 + AluJb SINE Alu 146 303 -9 2071 140 3 13 chr3 20281728 20282036 -207242542 + AluSx SINE Alu 1 305 -7 1968 67 0 4 chr3 20282143 20282409 -207242169 - AluY SINE Alu 0 310 46 1288 171 14 46 chr3 20282476 20282756 -207241822 - AluJb SINE Alu -2 310 40 1460 170 92 3 chr3 20282962 20283244 -207241334 + AluJo SINE Alu 1 307 -5 265 336 25 34 chr3 20283537 20283656 -207240922 + L2 LINE L2 3137 3254 -18 2129 141 0 0 chr3 20283873 20284185 -207240393 - AluJb SINE Alu 0 312 1 222 250 56 0 chr3 20284654 20284726 -207239852 + MIR3 SINE MIR 109 184 -24 241 342 0 43 chr3 20285659 20285820 -207238758 + G-rich Low_complexity Low_complexity 6 159 0 1638 174 25 0 chr3 20286494 20286769 -207237809 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr3 20286791 20286811 -207237767 + (CA)n Simple_repeat Simple_repeat 1 20 0 2173 119 3 3 chr3 20286863 20287174 -207237404 - AluSx SINE Alu -1 311 1 245 259 188 36 chr3 20287247 20287347 -207237231 + MIR SINE MIR 4 124 -138 2164 99 26 10 chr3 20287347 20287650 -207236928 - AluY SINE Alu -3 308 1 245 259 188 36 chr3 20287650 20287661 -207236917 + MIR SINE MIR 124 132 -130 908 108 0 43 chr3 20287972 20288111 -207236467 + FLAM_C SINE Alu 1 133 0 1957 123 41 17 chr3 20288302 20288595 -207235983 + AluJb SINE Alu 1 300 -12 322 269 90 21 chr3 20288903 20289048 -207235530 - HAL1 LINE L1 -1606 901 747 869 218 39 0 chr3 20289048 20289227 -207235351 - MER5A DNA MER1_type 0 189 4 691 219 76 19 chr3 20289287 20289497 -207235081 - HAL1 LINE L1 -1852 655 434 240 246 223 40 chr3 20289519 20289694 -207234884 - HAL1 LINE L1 -2159 348 142 476 241 173 11 chr3 20289799 20289990 -207234588 + MIR SINE MIR 25 246 -16 216 0 0 0 chr3 20289990 20290014 -207234564 + (TG)n Simple_repeat Simple_repeat 2 25 0 2210 129 3 0 chr3 20290015 20290318 -207234260 - AluSx SINE Alu -8 304 1 265 288 0 0 chr3 20290344 20290403 -207234175 - HAL1 LINE L1 -2439 68 10 2273 96 7 0 chr3 20290476 20290778 -207233800 + AluSc SINE Alu 1 304 -5 406 243 60 39 chr3 20290794 20290939 -207233639 - MIR3 SINE MIR -68 140 15 770 209 25 12 chr3 20292171 20292334 -207232244 + FRAM SINE Alu 1 165 -1 1113 103 157 0 chr3 20292368 20292553 -207232025 + L1PB4 LINE L1 5941 6154 -2 252 221 45 36 chr3 20292563 20292684 -207231894 - MIR SINE MIR -61 147 19 1866 146 10 3 chr3 20293000 20293295 -207231283 - AluJo SINE Alu -15 297 1 935 240 53 0 chr3 20293978 20294186 -207230392 - MER58A DNA MER1_type -1 223 5 2283 83 4 0 chr3 20294742 20295020 -207229558 + AluSq SINE Alu 17 295 -18 3152 107 43 14 chr3 20295047 20295157 -207229421 + L1MB3 LINE L1 5677 5782 -401 2016 151 7 3 chr3 20295157 20295456 -207229122 + AluJb SINE Alu 1 300 -12 3152 107 43 14 chr3 20295456 20295831 -207228747 + L1MB3 LINE L1 5782 6176 -7 922 242 278 0 chr3 20296815 20297178 -207227400 - L2 LINE L2 -27 3286 2823 227 134 60 75 chr3 20297180 20297247 -207227331 + L2 LINE L2 3207 3272 0 1538 152 63 40 chr3 20298027 20298401 -207226177 - AluJo SINE Alu 0 381 1 464 196 20 39 chr3 20298570 20298672 -207225906 + MER5A DNA MER1_type 14 113 -76 217 319 81 16 chr3 20299169 20299354 -207225224 - L2 LINE L2 -228 3044 2848 273 298 61 8 chr3 20300432 20300563 -207224015 - L2 LINE L2 -189 3083 2946 1716 151 95 0 chr3 20300630 20300915 -207223663 + AluJo SINE Alu 1 312 0 2202 195 109 10 chr3 20301178 20301692 -207222886 - L1MD2 LINE L1 -268 6091 5527 877 59 67 0 chr3 20301692 20301811 -207222767 + MLT2D LTR ERVL 1 127 -287 753 179 0 0 chr3 20301815 20301927 -207222651 + FLAM_A SINE Alu 4 115 -27 1657 148 13 52 chr3 20301944 20302077 -207222501 + MLT2C2 LTR ERVL 115 252 -212 1994 160 0 6 chr3 20302077 20302389 -207222189 + AluJb SINE Alu 1 310 -2 1657 148 13 52 chr3 20302389 20302560 -207222018 + MLT2C2 LTR ERVL 252 407 -57 235 202 8 48 chr3 20302593 20302717 -207221861 + CT-rich Low_complexity Low_complexity 1 119 0 225 100 0 0 chr3 20302754 20302784 -207221794 + MLT2C2 LTR ERVL 489 518 -2 233 188 0 0 chr3 20302822 20302886 -207221692 + L1MC4 LINE L1 6640 6703 -1339 296 203 27 0 chr3 20302886 20302960 -207221618 + (TATG)n Simple_repeat Simple_repeat 2 77 0 466 122 265 0 chr3 20302973 20303071 -207221507 - AluJb SINE Alu -178 134 11 2532 182 18 27 chr3 20303090 20303172 -207221406 - L1MD2 LINE L1 -743 5403 5322 2377 100 3 3 chr3 20303172 20303483 -207221095 - AluSp SINE Alu -2 311 1 2532 182 18 27 chr3 20303483 20304171 -207220407 - L1MD2 LINE L1 -824 5322 4745 7977 128 39 32 chr3 20304171 20304329 -207220249 - Tigger2 DNA MER2_type -1 2717 2562 1835 178 3 19 chr3 20304329 20304644 -207219934 - AluJo SINE Alu -2 310 1 7977 128 39 32 chr3 20304644 20304748 -207219830 - Tigger2 DNA MER2_type -156 2562 2460 2348 107 0 0 chr3 20304748 20305048 -207219530 + AluSc SINE Alu 1 300 -9 7977 128 39 32 chr3 20305048 20306146 -207218432 - Tigger2 DNA MER2_type -258 2460 1347 520 259 26 0 chr3 20306146 20306262 -207218316 - FLAM_C SINE Alu -23 120 2 1136 159 150 35 chr3 20306312 20306539 -207218039 - AluJo SINE Alu -24 288 36 548 154 0 11 chr3 20306545 20306636 -207217942 - L1MC1 LINE L1 -13 6320 6231 358 165 3 75 chr3 20306639 20306786 -207217792 - L1M LINE L1 -772 5412 4611 1673 141 12 4 chr3 20306792 20307040 -207217538 + AluJo SINE Alu 25 274 -38 4223 229 92 35 chr3 20307042 20307287 -207217291 - L1MD2 LINE L1 -1696 4450 4221 1967 166 0 3 chr3 20307287 20307595 -207216983 + AluJb SINE Alu 1 307 -5 4223 229 92 35 chr3 20307595 20308846 -207215732 - L1MD2 LINE L1 -1925 4221 2868 1164 241 93 59 chr3 20308990 20309627 -207214951 - L1ME3A LINE L1 -326 5844 5159 2182 113 0 3 chr3 20309627 20309918 -207214660 - AluSx SINE Alu -22 290 1 1164 241 93 59 chr3 20309918 20310077 -207214501 - L1ME3A LINE L1 -1011 5159 5007 831 141 0 83 chr3 20310079 20310235 -207214343 - FLAM_C SINE Alu 0 143 1 590 285 62 10 chr3 20310248 20310536 -207214042 - L1ME3A LINE L1 -1147 4999 4697 225 116 0 70 chr3 20310606 20310649 -207213929 + LTR62 LTR ERVK 614 653 -66 911 142 18 138 chr3 20310788 20310934 -207213644 - L1PA16 LINE L1 0 6156 5994 2423 96 0 0 chr3 20310934 20311236 -207213342 - AluSx SINE Alu -10 302 1 911 142 18 138 chr3 20311236 20311320 -207213258 - L1PA16 LINE L1 -162 5994 5901 9605 47 103 3 chr3 20311320 20312524 -207212054 - SVA Other Other -5 1381 58 258 32 0 0 chr3 20312524 20312555 -207212023 + (AGGGGG)n Simple_repeat Simple_repeat 3 33 0 911 142 18 138 chr3 20312555 20312618 -207211960 - L1PA16 LINE L1 -252 5904 5904 752 300 93 29 chr3 20312863 20313509 -207211069 + L2 LINE L2 2001 2687 -627 1879 85 0 0 chr3 20313559 20313795 -207210783 - AluY SINE Alu -16 295 60 2333 100 0 3 chr3 20313956 20314257 -207210321 + AluSc SINE Alu 1 300 -9 21 0 0 0 chr3 20314398 20314419 -207210159 + AT_rich Low_complexity Low_complexity 1 21 0 278 213 0 0 chr3 20315273 20315320 -207209258 - AluJb SINE Alu -185 117 71 250 250 19 0 chr3 20315305 20315357 -207209221 - AluSp SINE Alu -115 188 136 * 895 141 60 148 chr3 20315363 20315451 -207209127 - L1MD2 LINE L1 0 6359 6265 2626 56 0 0 chr3 20315451 20315754 -207208824 - AluY SINE Alu -8 303 1 1687 192 0 32 chr3 20315757 20316065 -207208513 - AluJo SINE Alu -10 302 5 895 141 60 148 chr3 20316065 20316256 -207208322 - L1MD2 LINE L1 -96 6263 6101 496 297 26 31 chr3 20316359 20316554 -207208024 + MIR SINE MIR 57 250 -12 1167 196 159 4 chr3 20316579 20316844 -207207734 - AluJo SINE Alu 0 304 2 777 143 0 8 chr3 20317045 20317178 -207207400 - FLAM_C SINE Alu 0 133 2 512 284 101 0 chr3 20317238 20317407 -207207171 - L3 LINE CR1 -292 1285 1100 718 279 156 32 chr3 20317567 20318233 -207206345 + HAL1 LINE L1 7 782 -1725 1817 224 87 34 chr3 20318236 20318882 -207205696 + HAL1 LINE L1 840 1519 -988 751 158 8 0 chr3 20318888 20319008 -207205570 + FLAM_C SINE Alu 2 122 -21 300 111 0 0 chr3 20319008 20319053 -207205525 + (TA)n Simple_repeat Simple_repeat 1 45 0 228 209 22 44 chr3 20319058 20319149 -207205429 + L1MC4 LINE L1 6615 6703 -1339 270 176 0 0 chr3 20319152 20319203 -207205375 + (TA)n Simple_repeat Simple_repeat 2 52 0 237 287 0 0 chr3 20319209 20319296 -207205282 + L1MC4 LINE L1 6614 6700 -1342 311 322 0 0 chr3 20319299 20319389 -207205189 + L1MC4 LINE L1 6614 6703 -1339 * 318 311 0 0 chr3 20319309 20319399 -207205179 - L1MC4 LINE L1 -1339 6703 6614 707 184 0 0 chr3 20319439 20319553 -207205025 + FLAM_A SINE Alu 16 129 -13 805 240 96 52 chr3 20319553 20319714 -207204864 + HAL1 LINE L1 1527 1706 -801 2101 122 3 3 chr3 20319714 20320010 -207204568 - AluSq SINE Alu -17 296 1 805 240 96 52 chr3 20320010 20320119 -207204459 + HAL1 LINE L1 1706 1809 -698 633 238 65 9 chr3 20320208 20320422 -207204156 + HAL1 LINE L1 2049 2274 -233 962 211 119 56 chr3 20320434 20320483 -207204095 - MLT1F LTR MaLR 0 593 549 1677 118 75 25 chr3 20320483 20320763 -207203815 - AluSx SINE Alu -18 294 1 962 211 119 56 chr3 20320763 20321182 -207203396 - MLT1F LTR MaLR -44 549 1 233 232 12 24 chr3 20321185 20321267 -207203311 + HAL1 LINE L1 2285 2365 -142 1204 166 0 37 chr3 20322775 20322992 -207201586 + MER3 DNA MER1_type 1 209 0 1630 165 44 34 chr3 20323232 20323529 -207201049 + AluJb SINE Alu 1 300 -12 191 325 50 12 chr3 20323652 20323732 -207200846 - L2 LINE L2 -5 3308 3226 926 127 0 15 chr3 20323785 20323919 -207200659 - AluSq SINE Alu -33 280 149 279 26 26 0 chr3 20323923 20323962 -207200616 + (TTTTG)n Simple_repeat Simple_repeat 1 165 0 2137 113 0 11 chr3 20323962 20324246 -207200332 - AluSx SINE Alu -31 281 1 815 244 169 12 chr3 20324280 20324644 -207199934 - L2 LINE L2 -147 3166 2750 339 335 72 20 chr3 20324703 20324855 -207199723 + L1ME4a LINE L1 5714 5873 -248 1708 154 52 11 chr3 20325677 20325972 -207198606 - AluSg SINE Alu 0 306 1 519 60 0 0 chr3 20326874 20326941 -207197637 + (T)n Simple_repeat Simple_repeat 1 67 0 1498 200 33 26 chr3 20327168 20327473 -207197105 + AluJo SINE Alu 1 307 -5 2464 68 0 37 chr3 20327791 20328113 -207196465 - AluY SINE Alu -1 310 1 1192 111 12 0 chr3 20328381 20328552 -207196026 - AluSg/x SINE Alu -7 305 133 2370 115 0 0 chr3 20328552 20328864 -207195714 - AluSx SINE Alu 0 312 1 2361 94 0 10 chr3 20329252 20329559 -207195019 + AluSq SINE Alu 1 304 -9 2238 121 0 0 chr3 20329573 20329880 -207194698 + AluSx SINE Alu 1 307 -5 1567 181 48 48 chr3 20330699 20331009 -207193569 + AluJo SINE Alu 1 310 -2 256 307 61 26 chr3 20331054 20331168 -207193410 - MIR SINE MIR -88 174 57 208 307 95 49 chr3 20331217 20331422 -207193156 + MIR SINE MIR 34 256 -6 1847 137 18 11 chr3 20331490 20331774 -207192804 + AluJb SINE Alu 27 312 0 2558 74 0 0 chr3 20331834 20332145 -207192433 - AluY SINE Alu 0 311 1 192 288 68 14 chr3 20332372 20332445 -207192133 - MIR3 SINE MIR -29 179 103 230 196 201 59 chr3 20332830 20332931 -207191647 - L1ME4a LINE L1 -175 5946 5861 1744 151 97 0 chr3 20332931 20333210 -207191368 - AluJb SINE Alu -6 306 1 230 196 201 59 chr3 20333210 20333327 -207191251 - L1ME4a LINE L1 -260 5861 5697 2247 120 0 3 chr3 20333349 20333650 -207190928 - AluSx SINE Alu -12 300 1 1180 262 119 32 chr3 20333651 20333740 -207190838 - L2 LINE L2 -1515 1799 1719 2012 135 7 16 chr3 20333740 20334044 -207190534 - AluSx SINE Alu -11 301 1 2468 95 0 0 chr3 20334044 20334350 -207190228 - AluSx SINE Alu -6 306 1 1180 262 119 32 chr3 20334350 20334685 -207189893 - L2 LINE L2 -1595 1719 1333 1829 155 13 28 chr3 20334685 20335002 -207189576 + AluSx SINE Alu 1 312 0 180 316 102 49 chr3 20335260 20335504 -207189074 - L2 LINE L2 -173 3099 2843 535 264 75 29 chr3 20337606 20337780 -207186798 - MIR3 SINE MIR -4 204 23 2330 125 0 0 chr3 20338112 20338425 -207186153 - AluSq SINE Alu 0 313 1 338 293 204 0 chr3 20338659 20338816 -207185762 - MIR SINE MIR -13 249 61 2291 105 0 3 chr3 20341157 20341453 -207183125 + AluSx SINE Alu 1 295 -17 1950 156 16 3 chr3 20341830 20342137 -207182441 + AluJo SINE Alu 1 311 -1 205 324 58 72 chr3 20342270 20342397 -207182181 - L2 LINE L2 -11 3261 3135 1656 158 59 7 chr3 20342397 20342669 -207181909 + AluJo SINE Alu 1 286 -26 205 324 58 72 chr3 20342669 20342680 -207181898 - L2 LINE L2 -137 3135 3125 368 256 39 62 chr3 20343651 20343780 -207180798 - MER103 DNA DNA 0 166 41 1769 148 0 79 chr3 20344392 20344722 -207179856 + AluJo SINE Alu 1 304 -8 301 299 142 15 chr3 20345855 20345989 -207178589 + MIR3 SINE MIR 17 167 -41 340 305 52 46 chr3 20349801 20349975 -207174603 - MER5A DNA MER1_type -1 188 14 266 313 140 18 chr3 20350207 20350373 -207174205 - MIR SINE MIR -49 213 30 1542 162 0 0 chr3 20350814 20351048 -207173530 - AluJo SINE Alu -78 234 1 5617 204 70 46 chr3 20351436 20352402 -207172176 - L1MB8 LINE L1 0 6178 5237 2469 75 10 0 chr3 20352402 20352708 -207171870 - AluSc SINE Alu 0 309 1 5617 204 70 46 chr3 20352708 20354389 -207170189 - L1MB8 LINE L1 -941 5237 3476 744 248 130 90 chr3 20354766 20355059 -207169519 + L2 LINE L2 2307 2624 -690 2275 97 0 29 chr3 20355059 20355367 -207169211 + AluSg SINE Alu 1 299 -11 744 248 130 90 chr3 20355367 20355505 -207169073 + L2 LINE L2 2624 2755 -559 2422 87 7 3 chr3 20355657 20355966 -207168612 - AluSx SINE Alu -2 310 1 257 222 28 42 chr3 20355987 20356059 -207168519 - L2 LINE L2 -44 3269 3199 2270 124 0 0 chr3 20356406 20356705 -207167873 - AluSx SINE Alu -13 299 1 247 234 0 0 chr3 20356810 20356857 -207167721 + MER5A DNA MER1_type 9 55 -134 1068 152 24 0 chr3 20357301 20357466 -207167112 + AluJo SINE Alu 1 169 -143 492 230 75 11 chr3 20357991 20358165 -207166413 - L2 LINE L2 -189 3083 2899 205 133 0 0 chr3 20358882 20358912 -207165666 - MIR SINE MIR -118 144 115 1746 148 4 0 chr3 20359485 20359790 -207164788 - AluJb SINE Alu 0 316 11 304 172 203 0 chr3 20360138 20360202 -207164376 - MIR SINE MIR -109 153 77 2657 153 19 19 chr3 20360341 20360767 -207163811 + MSTB LTR MaLR 1 426 0 7000 151 59 40 chr3 20360767 20360874 -207163704 + MSTB-int LTR MaLR 1 104 -1547 2131 129 3 3 chr3 20360874 20361168 -207163410 + AluSx SINE Alu 1 294 -18 7000 151 59 40 chr3 20361168 20361531 -207163047 + MSTB-int LTR MaLR 104 458 -1193 2108 146 0 13 chr3 20361531 20361846 -207162732 - AluSq SINE Alu 0 313 3 7000 151 59 40 chr3 20361846 20362692 -207161886 + MSTB-int LTR MaLR 458 1344 -307 249 96 0 0 chr3 20362692 20362730 -207161848 + AluSx SINE Alu 1 34 -268 1535 199 181 24 chr3 20362739 20363202 -207161376 - LTR10A LTR ERV1 -61 548 13 2152 103 0 14 chr3 20363206 20363317 -207161261 + AluSx SINE Alu 26 137 -175 2310 105 0 10 chr3 20363317 20363623 -207160955 + AluSq SINE Alu 1 303 -10 2152 103 0 14 chr3 20363623 20363793 -207160785 + AluSx SINE Alu 137 303 -9 1564 89 13 188 chr3 20363793 20363995 -207160583 + MSTB-int LTR MaLR 1336 1572 -79 1762 82 0 0 chr3 20363995 20364214 -207160364 - AluSg/x SINE Alu -9 303 85 1564 89 13 188 chr3 20364214 20364307 -207160271 + MSTB-int LTR MaLR 1572 1680 29 1954 155 0 7 chr3 20364307 20364603 -207159975 + AluJb SINE Alu 1 294 -18 2220 105 0 56 chr3 20364606 20364930 -207159648 + AluSq SINE Alu 1 306 -7 1564 89 13 188 chr3 20364930 20365012 -207159566 + MSTB-int LTR MaLR 1556 1651 0 2660 160 17 0 chr3 20365012 20365431 -207159147 + MSTB LTR MaLR 1 426 0 206 246 77 15 chr3 20365431 20365496 -207159082 + MIR3 SINE MIR 99 167 -41 1054 209 22 13 chr3 20366192 20366417 -207158161 + AluJo SINE Alu 1 227 -85 967 160 51 6 chr3 20366906 20367062 -207157516 - AluJo SINE Alu -149 163 1 2418 100 0 0 chr3 20367065 20367375 -207157203 - AluSx SINE Alu -2 310 1 2401 63 0 7 chr3 20367439 20367740 -207156838 + AluY SINE Alu 1 299 -12 196 111 0 56 chr3 20367870 20367906 -207156672 - MIR SINE MIR -112 150 117 4007 154 70 42 chr3 20367917 20368573 -207156005 - L1MB7 LINE L1 0 6184 5547 1802 150 27 31 chr3 20368573 20368867 -207155711 - AluJo SINE Alu -19 293 1 4007 154 70 42 chr3 20368867 20369056 -207155522 - L1MB7 LINE L1 -637 5547 5312 1972 140 21 0 chr3 20369056 20369342 -207155236 - AluSx SINE Alu -20 292 1 4007 154 70 42 chr3 20369342 20369373 -207155205 - L1MB7 LINE L1 -872 5312 5283 200 236 0 36 chr3 20369525 20369580 -207154998 - MIR SINE MIR -112 150 98 2040 142 23 3 chr3 20369580 20369883 -207154695 + AluJo SINE Alu 1 309 -3 2328 112 0 0 chr3 20369887 20370191 -207154387 + AluSx SINE Alu 1 304 -8 258 328 151 8 chr3 20370216 20370454 -207154124 + L3 LINE CR1 1166 1437 -140 2419 75 0 13 chr3 20370741 20371091 -207153487 - AluSq SINE Alu 0 356 11 296 24 0 24 chr3 20371092 20371134 -207153444 + (CCTG)n Simple_repeat Simple_repeat 2 42 0 1628 195 17 7 chr3 20371237 20371524 -207153054 - AluJo SINE Alu -22 290 1 1764 98 12 12 chr3 20371674 20371918 -207152660 + AluSx SINE Alu 50 293 -19 744 129 32 0 chr3 20371918 20372042 -207152536 + Tigger1 DNA MER2_type 484 611 -1807 1808 174 44 49 chr3 20372044 20372176 -207152402 - L1M4c LINE L1 -5605 779 648 1986 160 3 0 chr3 20372176 20372476 -207152102 - AluJb SINE Alu -11 301 1 1808 174 44 49 chr3 20372476 20372750 -207151828 - L1M4c LINE L1 -5736 648 375 2018 112 7 7 chr3 20372857 20373143 -207151435 + AluSg SINE Alu 1 286 -24 736 240 51 39 chr3 20373155 20373409 -207151169 + L2 LINE L2 2905 3161 -152 1378 151 77 5 chr3 20373409 20373772 -207150806 - LTR65 LTR ERV1 0 669 224 1659 146 75 117 chr3 20373787 20374273 -207150305 + MER90 LTR ERV1 72 537 -77 1042 173 4 67 chr3 20374373 20374449 -207150129 - AluJb SINE Alu -101 211 132 2387 73 0 10 chr3 20374449 20374749 -207149829 - AluY SINE Alu -14 297 1 1042 173 4 67 chr3 20374749 20374897 -207149681 - AluJb SINE Alu -180 132 1 2205 120 0 0 chr3 20374926 20375227 -207149351 - AluSg SINE Alu -8 302 2 1965 138 17 0 chr3 20375291 20375588 -207148990 - AluSg SINE Alu -7 303 2 315 195 23 11 chr3 20375591 20375678 -207148900 - L1M4 LINE L1 -842 5304 5217 431 20 0 0 chr3 20375811 20375862 -207148716 + AluY SINE Alu 6 56 -256 1556 135 20 20 chr3 20376042 20376199 -207148379 - AluSx SINE Alu -17 295 139 198 0 0 0 chr3 20376199 20376221 -207148357 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 2304 71 0 0 chr3 20376221 20376504 -207148074 - AluSp SINE Alu -30 283 1 1556 135 20 20 chr3 20376504 20376590 -207147988 - AluSx SINE Alu -171 141 51 7003 67 5 8 chr3 20376592 20377550 -207147028 - MER11C LTR ERVK 0 1071 28 440 188 25 0 chr3 20377550 20377630 -207146948 - AluY SINE Alu -235 83 2 206 326 91 46 chr3 20377639 20377713 -207146865 + MER5A DNA MER1_type 7 76 -113 2150 122 7 0 chr3 20377713 20378017 -207146561 + AluSq SINE Alu 1 306 -7 206 326 91 46 chr3 20378017 20378117 -207146461 + MER5A DNA MER1_type 76 189 0 940 128 0 0 chr3 20378147 20378280 -207146298 + FLAM_C SINE Alu 1 133 0 25 0 0 0 chr3 20378849 20378874 -207145704 + AT_rich Low_complexity Low_complexity 1 25 0 1001 139 0 0 chr3 20378889 20379040 -207145538 - AluSg/x SINE Alu -24 286 136 252 209 0 0 chr3 20379089 20379132 -207145446 - AluJ/monomer SINE Alu -258 44 2 810 254 23 0 chr3 20379137 20379357 -207145221 - L1M4 LINE L1 -2187 3959 3735 2364 87 0 0 chr3 20379387 20379697 -207144881 - AluY SINE Alu -1 310 1 1156 112 6 0 chr3 20379734 20379895 -207144683 - AluSx SINE Alu -150 162 1 2158 97 28 0 chr3 20380403 20380693 -207143885 - AluSc SINE Alu -11 298 1 1387 167 67 7 chr3 20381124 20381393 -207143185 - AluJo SINE Alu -27 285 1 316 284 0 11 chr3 20382512 20382600 -207141978 + MIR SINE MIR 68 154 -108 1908 78 3 57 chr3 20382886 20383182 -207141396 + AluSx SINE Alu 1 280 -32 198 0 0 0 chr3 20383184 20383206 -207141372 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2274 77 0 3 chr3 20383625 20383925 -207140653 - AluSx SINE Alu -13 299 1 234 310 58 0 chr3 20384592 20384679 -207139899 - L2 LINE L2 -2 3311 3220 369 0 0 0 chr3 20384689 20384730 -207139848 + (TTA)n Simple_repeat Simple_repeat 2 42 0 482 35 0 0 chr3 20384733 20384791 -207139787 - AluY SINE Alu -28 281 224 660 164 9 9 chr3 20384900 20385009 -207139569 + AluSg/x SINE Alu 185 296 -13 1994 145 0 3 chr3 20385009 20385320 -207139258 + AluSg SINE Alu 1 310 0 2271 91 13 0 chr3 20385326 20385633 -207138945 + AluSx SINE Alu 1 311 -1 935 216 118 50 chr3 20385643 20386042 -207138536 - L1M4 LINE L1 -1542 4604 4179 * 1361 233 52 41 chr3 20386039 20386694 -207137884 - L1MDb LINE L1 -4959 1581 910 411 342 30 43 chr3 20387224 20387525 -207137053 - L1MDb LINE L1 -6210 330 34 2165 114 0 0 chr3 20387601 20387899 -207136679 - AluSx SINE Alu -14 298 1 1561 170 67 3 chr3 20388113 20388395 -207136183 - AluJb SINE Alu -11 301 2 1549 190 13 20 chr3 20388448 20388748 -207135830 - AluJo SINE Alu -8 304 7 431 206 50 35 chr3 20388778 20388919 -207135659 - L1ME3A LINE L1 -18 6152 6010 1991 130 3 3 chr3 20388996 20389289 -207135289 - AluJb SINE Alu -9 303 11 323 340 151 5 chr3 20389389 20389664 -207134914 + L2 LINE L2 2748 3054 -218 713 167 0 0 chr3 20389861 20389969 -207134609 + FLAM_A SINE Alu 18 125 -17 663 176 30 0 chr3 20390188 20390319 -207134259 + MER5A DNA MER1_type 55 189 0 1431 185 3 28 chr3 20390422 20390709 -207133869 + AluJo SINE Alu 16 295 -17 935 122 0 34 chr3 20390862 20391009 -207133569 + FLAM_C SINE Alu 1 142 -1 364 301 80 23 chr3 20391151 20391327 -207133251 - MIR SINE MIR 0 262 77 2254 75 0 3 chr3 20391687 20391982 -207132596 + AluY SINE Alu 1 294 -17 201 39 0 0 chr3 20392017 20392043 -207132535 + (CATA)n Simple_repeat Simple_repeat 3 28 0 1864 116 12 66 chr3 20392046 20392366 -207132212 + AluSx SINE Alu 1 303 -9 466 307 79 46 chr3 20392375 20392643 -207131935 + L1M4 LINE L1 3962 4220 -1926 305 93 19 0 chr3 20392643 20392697 -207131881 + (TA)n Simple_repeat Simple_repeat 2 56 0 466 307 79 46 chr3 20392697 20392914 -207131664 + L1M4 LINE L1 4220 4428 -1718 2221 114 0 0 chr3 20392914 20393222 -207131356 + AluSx SINE Alu 1 308 -4 466 307 79 46 chr3 20393222 20393728 -207130850 + L1M4 LINE L1 4428 4992 -1154 1743 181 3 3 chr3 20393728 20394031 -207130547 + AluJb SINE Alu 7 309 -3 466 307 79 46 chr3 20394031 20394076 -207130502 + L1M4 LINE L1 4992 5034 -1112 2062 109 3 62 chr3 20394085 20394407 -207130171 + AluSx SINE Alu 1 303 -9 1049 82 7 0 chr3 20394506 20394641 -207129937 + AluSq/x SINE Alu 1 136 -176 2412 72 0 0 chr3 20395227 20395531 -207129047 + AluY SINE Alu 1 304 -7 1155 69 0 0 chr3 20395607 20395752 -207128826 + AluSq/x SINE Alu 1 145 -167 2134 95 14 0 chr3 20395752 20396047 -207128531 + AluSq SINE Alu 1 299 -14 2179 117 3 0 chr3 20396398 20396706 -207127872 - AluSq SINE Alu -4 309 1 5042 44 15 4 chr3 20397017 20398129 -207126449 - MER11A LTR ERVK 0 1266 1 2135 105 0 22 chr3 20398141 20398456 -207126122 - AluSg SINE Alu -1 309 2 249 324 124 7 chr3 20399128 20399273 -207125305 - MIR3 SINE MIR -18 190 29 1950 148 0 0 chr3 20399353 20399643 -207124935 + AluSx SINE Alu 1 290 -22 818 81 88 29 chr3 20399704 20399840 -207124738 - L1MB3 LINE L1 -9 6174 6031 1752 74 0 4 chr3 20400154 20400384 -207124194 + AluSq SINE Alu 84 312 -1 778 305 166 15 chr3 20400479 20401020 -207123558 + L2 LINE L2 2127 2749 -565 1788 119 19 47 chr3 20401020 20401340 -207123238 + AluSx SINE Alu 1 311 -1 358 235 59 0 chr3 20401340 20401425 -207123153 + L2 LINE L2 3214 3303 -10 1128 167 32 23 chr3 20401433 20401604 -207122974 - AluJb SINE Alu -5 307 132 2259 99 0 6 chr3 20401604 20401917 -207122661 - AluSx SINE Alu -1 311 1 1128 167 32 23 chr3 20401917 20401966 -207122612 - AluJb SINE Alu -180 132 85 2676 189 50 68 chr3 20402016 20402767 -207121811 + L1 LINE L1 3791 4554 -1592 1632 109 0 0 chr3 20402767 20402988 -207121590 - AluSg/x SINE Alu -7 303 83 2676 189 50 68 chr3 20402988 20403086 -207121492 + L1 LINE L1 4554 4652 -1494 1700 187 0 7 chr3 20403086 20403386 -207121192 + AluJo SINE Alu 1 298 -14 2676 189 50 68 chr3 20403386 20403454 -207121124 + L1 LINE L1 4652 4630 -1516 2226 100 7 7 chr3 20403454 20403763 -207120815 + AluSc SINE Alu 1 309 0 2676 189 50 68 chr3 20403763 20403900 -207120678 + L1 LINE L1 4629 4767 -1379 1314 99 0 0 chr3 20404001 20404172 -207120406 - AluSx SINE Alu -141 171 1 2344 50 7 7 chr3 20404219 20404518 -207120060 - AluY SINE Alu -12 299 1 308 287 32 84 chr3 20404518 20404691 -207119887 - L1ME4a LINE L1 -237 5884 5741 1483 207 13 13 chr3 20404691 20404995 -207119583 - AluJo SINE Alu -8 304 1 308 287 32 84 chr3 20404995 20405115 -207119463 - L1ME4a LINE L1 -380 5741 5616 832 161 15 0 chr3 20405116 20405246 -207119332 + AluJb SINE Alu 2 133 -179 1698 106 75 0 chr3 20405319 20405574 -207119004 + AluSg SINE Alu 1 274 -36 24 0 0 0 chr3 20405574 20405598 -207118980 + AT_rich Low_complexity Low_complexity 1 24 0 216 67 0 0 chr3 20411820 20411850 -207112728 + (CCCCAG)n Simple_repeat Simple_repeat 6 35 0 545 178 50 0 chr3 20416519 20416620 -207107958 + MIR SINE MIR 104 209 -53 2828 0 0 0 chr3 20417782 20418092 -207106486 - AluYa5 SINE Alu -1 310 1 205 200 17 26 chr3 20419003 20419118 -207105460 + G-rich Low_complexity Low_complexity 5 118 0 256 247 26 0 chr3 20419793 20419870 -207104708 + C-rich Low_complexity Low_complexity 2 80 0 1894 137 0 0 chr3 20424658 20424920 -207099658 - AluJb SINE Alu -50 262 1 240 310 18 9 chr3 20426371 20426484 -207098094 + (CA)n Simple_repeat Simple_repeat 2 115 0 2405 35 11 3 chr3 20427649 20427962 -207096616 - AluY SINE Alu 0 315 1 542 202 64 53 chr3 20430281 20430514 -207094064 + LTR45B LTR ERV1 324 489 0 1286 144 88 48 chr3 20430592 20430842 -207093736 - AluJb SINE Alu -19 293 34 451 127 0 0 chr3 20430842 20430905 -207093673 - AluJo SINE Alu -166 146 84 838 194 11 6 chr3 20430909 20431084 -207093494 + MER58A DNA MER1_type 45 220 -4 268 339 83 16 chr3 20431153 20431274 -207093304 + MIR SINE MIR 21 149 -113 337 164 30 0 chr3 20432494 20432561 -207092017 + L1MC3 LINE L1 6109 6177 -1608 2752 174 82 55 chr3 20432622 20433259 -207091319 - L1MC3 LINE L1 -166 7619 6959 2415 74 10 16 chr3 20433259 20433570 -207091008 + AluSc SINE Alu 1 309 0 2752 174 82 55 chr3 20433570 20433655 -207090923 - L1MC3 LINE L1 -826 6959 6878 974 148 59 24 chr3 20433889 20434058 -207090520 - FRAM SINE Alu -1 175 1 341 270 223 19 chr3 20434233 20434444 -207090134 + MLT1K LTR MaLR 330 583 -5 2266 107 0 7 chr3 20434813 20435113 -207089465 + AluSx SINE Alu 3 300 -12 2302 100 3 0 chr3 20435782 20436073 -207088505 + AluSq SINE Alu 1 292 -21 208 186 116 0 chr3 20436489 20436532 -207088046 - L3 LINE CR1 -2 1575 1528 456 19 0 0 chr3 20436692 20436745 -207087833 + (CA)n Simple_repeat Simple_repeat 2 54 0 1212 123 0 6 chr3 20436750 20436912 -207087666 - AluSq SINE Alu -152 161 1 23 33 0 0 chr3 20436961 20436991 -207087587 + AT_rich Low_complexity Low_complexity 1 30 0 1754 168 14 7 chr3 20436993 20437285 -207087293 + AluJo SINE Alu 1 294 -18 1977 143 19 10 chr3 20437576 20437884 -207086694 + AluJb SINE Alu 1 311 -1 2137 222 21 107 chr3 20437921 20438384 -207086194 - L1ME3 LINE L1 0 6162 5661 2194 87 62 0 chr3 20438384 20438672 -207085906 + AluSp SINE Alu 1 306 -7 2137 222 21 107 chr3 20438672 20438685 -207085893 - L1ME3 LINE L1 -501 5661 5648 1964 128 14 20 chr3 20438685 20438981 -207085597 + AluJb SINE Alu 1 294 -18 2137 222 21 107 chr3 20438981 20439418 -207085160 - L1ME3 LINE L1 -514 5648 5327 472 86 14 0 chr3 20439671 20439741 -207084837 + MER41A LTR ERV1 396 466 -88 2354 89 0 16 chr3 20439758 20440061 -207084517 + AluSx SINE Alu 1 298 -14 246 167 14 97 chr3 20440196 20440268 -207084310 - MIR SINE MIR 0 262 197 489 163 0 0 chr3 20440268 20440348 -207084230 - Tigger5 DNA MER2_type 0 2323 2244 2202 128 0 0 chr3 20440353 20440649 -207083929 + AluSx SINE Alu 1 296 -16 1781 162 38 3 chr3 20441815 20442105 -207082473 + AluJb SINE Alu 1 300 -12 2402 79 0 0 chr3 20442135 20442426 -207082152 - AluSc SINE Alu -18 291 1 1167 186 9 36 chr3 20442505 20442725 -207081853 + AluJo SINE Alu 92 305 -7 187 330 143 9 chr3 20442934 20443046 -207081532 + MIR SINE MIR 49 175 -87 717 146 81 0 chr3 20443108 20443231 -207081347 - FLAM_C SINE Alu 0 133 1 214 255 0 20 chr3 20443428 20443479 -207081099 - L3 LINE CR1 -10 1567 1518 396 0 0 0 chr3 20444460 20444504 -207080074 + (CA)n Simple_repeat Simple_repeat 2 45 0 330 26 0 0 chr3 20444503 20444542 -207080036 + (TC)n Simple_repeat Simple_repeat 1 39 0 * 1845 166 3 7 chr3 20445706 20446001 -207078577 - AluSx SINE Alu -18 294 1 2132 109 39 0 chr3 20446014 20446298 -207078280 - AluSq SINE Alu -18 295 1 863 155 18 12 chr3 20446298 20446466 -207078112 - L1MB5 LINE L1 -346 5828 5660 2281 105 10 3 chr3 20446467 20446771 -207077807 - AluSq SINE Alu -7 306 1 2075 118 11 7 chr3 20446806 20447093 -207077485 - AluSx SINE Alu -20 292 5 2258 110 3 3 chr3 20447101 20447400 -207077178 - AluSc SINE Alu -10 299 1 2284 102 3 0 chr3 20447404 20447698 -207076880 - AluSg SINE Alu -15 295 1 793 158 84 91 chr3 20447761 20447887 -207076691 - L1MB5 LINE L1 -1015 5131 5006 1811 157 20 20 chr3 20447887 20448187 -207076391 + AluJo SINE Alu 1 300 -12 793 158 84 91 chr3 20448187 20448345 -207076233 - L1MB5 LINE L1 -1140 5006 4849 340 140 0 0 chr3 20448349 20448399 -207076179 + Alu SINE Alu 1 50 -252 1910 180 38 99 chr3 20448508 20448843 -207075735 + L1M3 LINE L1 4810 5164 -1007 1815 163 3 38 chr3 20448843 20449162 -207075416 + AluJo SINE Alu 1 308 -4 1910 180 38 99 chr3 20449162 20449363 -207075215 + L1M3 LINE L1 5164 5331 -840 1832 174 16 10 chr3 20449363 20449667 -207074911 + AluJb SINE Alu 1 306 -6 1910 180 38 99 chr3 20449667 20449792 -207074786 + L1M3 LINE L1 5331 5462 -709 6860 46 7 1 chr3 20449794 20450982 -207073596 - L1PA5 LINE L1 -28 6126 4932 686 142 0 0 chr3 20450993 20451106 -207073472 + L1MB4 LINE L1 6029 6141 -39 2055 128 10 0 chr3 20451106 20451395 -207073183 + AluSx SINE Alu 1 292 -20 1939 147 27 3 chr3 20451406 20451699 -207072879 - AluSx SINE Alu -12 300 1 648 71 0 0 chr3 20451732 20451816 -207072762 + THE1B LTR MaLR 198 281 -83 319 332 139 41 chr3 20452388 20452622 -207071956 + HAL1 LINE L1 436 710 -1797 2297 97 7 3 chr3 20452622 20452921 -207071657 + AluSq SINE Alu 2 301 -12 319 332 139 41 chr3 20452921 20453002 -207071576 + HAL1 LINE L1 710 782 -1725 317 256 68 83 chr3 20453033 20453166 -207071412 + L1MC5 LINE L1 7805 7935 -26 22 0 0 0 chr3 20453279 20453301 -207071277 + AT_rich Low_complexity Low_complexity 1 22 0 1273 98 0 6 chr3 20453548 20453711 -207070867 - AluSx SINE Alu -150 162 1 394 228 84 30 chr3 20453761 20453909 -207070669 - Charlie7 DNA MER1_type 0 2612 2474 1773 134 73 14 chr3 20453909 20454184 -207070394 + AluSx SINE Alu 11 301 -11 2774 10 0 3 chr3 20454192 20454525 -207070053 + AluYb8 SINE Alu 1 332 0 394 228 84 30 chr3 20454525 20454568 -207070010 - Charlie7 DNA MER1_type -144 2468 2400 2492 76 3 0 chr3 20454839 20455140 -207069438 + AluSp SINE Alu 1 302 -11 412 327 68 32 chr3 20455170 20455390 -207069188 + MIR SINE MIR 19 246 -16 227 328 69 23 chr3 20455505 20455636 -207068942 + MIR SINE MIR 45 181 -27 2496 62 0 0 chr3 20456024 20456329 -207068249 + AluY SINE Alu 1 305 -6 2015 131 0 7 chr3 20456553 20456859 -207067719 + AluJo SINE Alu 1 304 -8 258 116 0 0 chr3 20457864 20457907 -207066671 + (CGG)n Simple_repeat Simple_repeat 3 45 0 207 0 0 0 chr3 20458124 20458147 -207066431 + (CCGGG)n Simple_repeat Simple_repeat 4 26 0 1387 128 22 13 chr3 20458221 20458448 -207066130 + AluJo SINE Alu 1 229 -83 231 331 81 15 chr3 20458649 20458785 -207065793 - MIR SINE MIR -1 261 117 2525 65 0 40 chr3 20459319 20459642 -207064936 + AluY SINE Alu 2 311 0 1511 165 62 28 chr3 20459646 20459937 -207064641 - AluJo SINE Alu -7 305 5 2082 120 3 20 chr3 20460520 20460819 -207063759 - AluSx SINE Alu -18 294 1 1679 165 49 3 chr3 20460820 20461105 -207063473 - AluSx SINE Alu -14 298 1 2586 172 99 68 chr3 20461248 20461566 -207063012 - LTR8A LTR ERV1 0 727 420 2583 77 0 0 chr3 20461566 20461877 -207062701 + AluY SINE Alu 1 311 0 2586 172 99 68 chr3 20461877 20462196 -207062382 - LTR8A LTR ERV1 -307 420 64 2262 97 23 0 chr3 20462196 20462495 -207062083 + AluSp SINE Alu 1 306 -7 2586 172 99 68 chr3 20462495 20462560 -207062018 - LTR8A LTR ERV1 -663 64 2 1444 196 53 14 chr3 20462570 20462851 -207061727 - AluJo SINE Alu -20 292 1 2515 62 0 10 chr3 20463003 20463308 -207061270 + AluY SINE Alu 1 302 -9 2108 112 4 0 chr3 20463324 20463602 -207060976 + AluSx SINE Alu 1 279 -33 4460 73 9 4 chr3 20463602 20464163 -207060415 - LTR6A LTR ERV1 0 564 1 231 36 0 0 chr3 20464170 20464198 -207060380 + (A)n Simple_repeat Simple_repeat 1 28 0 268 282 134 40 chr3 20464245 20464484 -207060094 - MIR SINE MIR 0 262 2 256 310 65 60 chr3 20464598 20464798 -207059780 + MIR SINE MIR 13 213 -49 2628 50 0 0 chr3 20464817 20465114 -207059464 - AluY SINE Alu -14 297 1 2331 94 0 17 chr3 20465114 20465411 -207059167 - AluSc SINE Alu -16 293 1 210 239 101 87 chr3 20465648 20465757 -207058821 - MIR SINE MIR 0 262 149 2205 102 0 26 chr3 20465757 20466070 -207058508 - AluSx SINE Alu -7 305 1 210 239 101 87 chr3 20466070 20466098 -207058480 - MIR SINE MIR -113 149 123 351 0 0 0 chr3 20516307 20516315 -207008263 + (TG)n Simple_repeat Simple_repeat 1 47 0 351 0 0 0 chr3 20516315 20516354 -207008224 + (TG)n Simple_repeat Simple_repeat 2 40 0 2212 120 7 0 chr3 20516372 20516672 -207007906 - AluSx SINE Alu -10 302 1 534 266 53 19 chr3 20516929 20517136 -207007442 - L1ME3A LINE L1 0 6170 5957 831 159 8 0 chr3 20517719 20517851 -207006727 + FLAM_C SINE Alu 1 133 -10 2337 102 0 7 chr3 20518306 20518611 -207005967 + AluSx SINE Alu 1 303 -9 30 0 0 0 chr3 20518643 20518673 -207005905 + AT_rich Low_complexity Low_complexity 1 30 0 857 148 8 0 chr3 20519028 20519156 -207005422 + FLAM_C SINE Alu 1 129 -14 2225 126 0 0 chr3 20519301 20519602 -207004976 + AluSq SINE Alu 2 302 -11 2101 132 0 13 chr3 20520857 20521161 -207003417 - AluSx SINE Alu -12 300 1 1025 233 56 69 chr3 20521270 20521647 -207002931 + L1ME3A LINE L1 5519 5890 -280 1713 176 0 4 chr3 20521650 20521929 -207002649 + AluJb SINE Alu 1 278 -34 208 293 189 28 chr3 20522150 20522256 -207002322 + MIR SINE MIR 30 152 -110 1817 142 0 50 chr3 20522505 20522828 -207001750 - AluJo SINE Alu -5 307 1 209 211 0 0 chr3 20523742 20523780 -207000798 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 721 192 0 0 chr3 20523780 20523905 -207000673 - AluJo SINE Alu -178 134 10 2164 110 7 0 chr3 20523919 20524210 -207000368 - AluSc SINE Alu -16 293 1 2528 74 0 3 chr3 20524459 20524771 -206999807 - AluY SINE Alu 0 311 1 1222 99 153 15 chr3 20524981 20525183 -206999395 + MER30 DNA MER1_type 1 230 0 23 0 0 0 chr3 20525200 20525223 -206999355 + AT_rich Low_complexity Low_complexity 1 23 0 501 181 0 0 chr3 20525864 20525958 -206998620 + FLAM_A SINE Alu 42 135 -7 26 0 0 0 chr3 20526316 20526342 -206998236 + AT_rich Low_complexity Low_complexity 1 26 0 790 173 0 15 chr3 20526676 20526809 -206997769 + FLAM_C SINE Alu 3 133 0 679 196 81 48 chr3 20526911 20527120 -206997458 - MER20 DNA MER1_type 0 219 4 21 0 0 0 chr3 20527306 20527327 -206997251 + AT_rich Low_complexity Low_complexity 1 21 0 822 203 69 36 chr3 20527345 20527621 -206996957 - L1M4 LINE L1 -1493 4653 4369 686 193 0 0 chr3 20528228 20528342 -206996236 - FLAM_A SINE Alu -19 114 1 449 242 60 33 chr3 20528342 20528557 -206996021 - L1M4 LINE L1 -1746 4400 4180 186 150 0 0 chr3 20528557 20528597 -206995981 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 2718 13 0 3 chr3 20528746 20529057 -206995521 + AluYb8 SINE Alu 1 310 -8 220 326 0 23 chr3 20529332 20529418 -206995160 - MIR SINE MIR -79 183 100 1341 188 52 24 chr3 20529735 20530023 -206994555 + AluJo SINE Alu 3 298 -14 909 276 60 84 chr3 20530141 20530695 -206993883 - L2 LINE L2 -50 3263 2705 1560 187 11 7 chr3 20530696 20530980 -206993598 - AluJb SINE Alu -27 285 1 1698 170 6 10 chr3 20531158 20531469 -206993109 - AluJo SINE Alu -2 310 1 22 56 0 0 chr3 20531666 20531702 -206992876 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chr3 20531702 20531726 -206992852 + (TTA)n Simple_repeat Simple_repeat 2 25 0 2197 71 0 0 chr3 20531728 20532008 -206992570 - AluY SINE Alu -31 280 1 377 240 0 31 chr3 20532008 20532104 -206992474 - L1MC4 LINE L1 -150 7892 7800 1654 180 0 23 chr3 20533309 20533614 -206990964 + AluJo SINE Alu 1 298 -14 1366 196 6 55 chr3 20533884 20534058 -206990520 - AluJo SINE Alu -16 296 142 2239 64 54 0 chr3 20534058 20534353 -206990225 - AluY SINE Alu 0 311 1 1366 196 6 55 chr3 20534353 20534489 -206990089 - AluJo SINE Alu -170 142 1 1947 138 13 0 chr3 20535275 20535579 -206988999 + AluSx SINE Alu 1 308 -4 395 268 189 31 chr3 20535579 20535590 -206988988 + MLT1D LTR MaLR 207 215 -290 243 0 0 0 chr3 20535590 20535617 -206988961 + (CA)n Simple_repeat Simple_repeat 2 28 0 395 268 189 31 chr3 20535617 20535832 -206988746 + MLT1D LTR MaLR 215 479 -26 1877 127 18 0 chr3 20535832 20536116 -206988462 + AluSq SINE Alu 1 289 -24 395 268 189 31 chr3 20536116 20536142 -206988436 + MLT1D LTR MaLR 479 500 -5 763 296 56 5 chr3 20536155 20536371 -206988207 - MIR SINE MIR -27 235 9 448 288 16 16 chr3 20537221 20537346 -206987232 - MIR SINE MIR -118 144 20 468 99 0 0 chr3 20537705 20537776 -206986802 + (GA)n Simple_repeat Simple_repeat 2 72 0 225 94 0 0 chr3 20537838 20537870 -206986708 + (T)n Simple_repeat Simple_repeat 1 32 0 1470 91 0 14 chr3 20538416 20538624 -206985954 - AluSq SINE Alu -5 308 104 1038 88 7 0 chr3 20538624 20538761 -206985817 + AluSc SINE Alu 31 168 -141 689 197 8 0 chr3 20538861 20538978 -206985600 - FLAM_C SINE Alu -15 118 1 494 159 45 89 chr3 20538978 20539089 -206985489 - HsTC2 DNA Tc2 -17 1881 1777 1985 95 3 46 chr3 20539089 20539394 -206985184 - AluSg1 SINE Alu -17 292 1 494 159 45 89 chr3 20539394 20539439 -206985139 - HsTC2 DNA Tc2 -121 1777 1732 700 216 5 79 chr3 20539445 20539546 -206985032 - HsTC2 DNA Tc2 -1722 176 94 862 138 0 36 chr3 20539546 20539684 -206984894 + FLAM_A SINE Alu 1 133 0 700 216 5 79 chr3 20539684 20539772 -206984806 - HsTC2 DNA Tc2 -1804 94 1 260 383 20 34 chr3 20541621 20541770 -206982808 - MIR SINE MIR -80 182 36 2297 94 0 0 chr3 20543232 20543540 -206981038 + AluY SINE Alu 1 308 -3 1074 69 0 0 chr3 20543718 20543849 -206980729 + AluSq/x SINE Alu 1 131 -181 2368 69 10 7 chr3 20544503 20544808 -206979770 - AluSp SINE Alu -7 306 1 2190 97 3 3 chr3 20545023 20545331 -206979247 - AluSq SINE Alu -5 308 1 227 189 0 19 chr3 20545720 20545773 -206978805 + CT-rich Low_complexity Low_complexity 1 52 0 225 0 0 91 chr3 20546882 20546926 -206977652 + (CCCCG)n Simple_repeat Simple_repeat 5 44 0 23 54 0 0 chr3 20547031 20547068 -206977510 + GC_rich Low_complexity Low_complexity 1 37 0 41 96 0 0 chr3 20547221 20547346 -206977232 + GC_rich Low_complexity Low_complexity 1 125 0 251 128 39 13 chr3 20547392 20547470 -206977108 + (CCG)n Simple_repeat Simple_repeat 3 82 0 27 0 0 0 chr3 20547487 20547514 -206977064 + GC_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr3 20549329 20549358 -206975220 + AT_rich Low_complexity Low_complexity 1 29 0 2042 89 24 3 chr3 20549417 20549708 -206974870 - AluSx SINE Alu -15 297 1 1950 167 82 22 chr3 20550334 20550736 -206973842 + MSTB LTR MaLR 1 426 0 357 312 121 17 chr3 20550753 20550926 -206973652 - MIR SINE MIR -54 208 18 2113 94 7 3 chr3 20551431 20551728 -206972850 - AluSp SINE Alu -15 298 1 327 340 69 32 chr3 20552915 20553162 -206971416 + L2 LINE L2 3053 3308 -5 347 150 0 0 chr3 20553226 20553286 -206971292 + MER5A DNA MER1_type 1 60 -129 919 213 0 0 chr3 20553286 20553460 -206971118 + AluJo SINE Alu 121 294 -18 735 463 134 4 chr3 20553465 20553718 -206970860 - AluSg SINE Alu -14 286 1 196 321 21 79 chr3 20557206 20557346 -206967232 + L2 LINE L2 3179 3310 -3 230 370 9 37 chr3 20557682 20557790 -206966788 - MIR3 SINE MIR -27 181 77 21 0 0 0 chr3 20559973 20559994 -206964584 + AT_rich Low_complexity Low_complexity 1 21 0 1838 135 14 7 chr3 20560104 20560400 -206964178 - AluSx SINE Alu -3 309 12 1413 219 24 21 chr3 20560771 20561105 -206963473 - MER58B DNA MER1_type -6 335 1 1164 174 5 23 chr3 20561164 20561382 -206963196 - AluJo SINE Alu -15 297 84 1903 140 3 26 chr3 20561386 20561693 -206962885 - AluSx SINE Alu -12 300 1 1832 108 79 0 chr3 20561759 20562038 -206962540 - AluSx SINE Alu -11 301 1 2076 116 17 0 chr3 20562449 20562742 -206961836 + AluSq SINE Alu 1 298 -15 844 230 104 11 chr3 20563497 20563784 -206960794 - L1MD2 LINE L1 -364 5995 5682 2139 82 10 7 chr3 20563815 20564134 -206960444 + AluSq SINE Alu 4 323 0 377 230 168 80 chr3 20564389 20564663 -206959915 + L1MC5 LINE L1 7299 7596 -365 2471 40 0 3 chr3 20564737 20565033 -206959545 + AluY SINE Alu 1 295 -16 341 216 31 21 chr3 20565116 20565213 -206959365 + L1MC5 LINE L1 7832 7929 -32 533 341 75 43 chr3 20565927 20566364 -206958214 - L3 LINE CR1 -65 1512 1062 761 201 197 18 chr3 20566819 20567093 -206957485 + MER33 DNA MER1_type 1 323 -1 254 297 0 14 chr3 20568486 20568560 -206956018 - L3 LINE CR1 -547 1030 958 1914 84 113 0 chr3 20568901 20569175 -206955403 - AluSx SINE Alu -7 305 1 1379 278 85 34 chr3 20570110 20570877 -206953701 + L2 LINE L2 2512 3313 0 2115 96 0 0 chr3 20571197 20571506 -206953072 - AluSq SINE Alu 0 309 1 2220 98 0 0 chr3 20571973 20572268 -206952310 - AluSq SINE Alu -18 295 1 226 262 48 36 chr3 20572879 20572963 -206951615 + MIR SINE MIR 159 243 -19 251 303 56 45 chr3 20573040 20573129 -206951449 - MIR SINE MIR -11 251 162 294 322 63 58 chr3 20573286 20573460 -206951118 + MLT1F LTR MaLR 12 186 -356 1474 175 3 38 chr3 20573782 20574096 -206950482 + AluJo SINE Alu 1 303 -9 186 237 0 68 chr3 20574868 20574927 -206949651 - L2 LINE L2 -75 3238 3184 206 207 37 98 chr3 20575385 20575467 -206949111 + L3 LINE CR1 1403 1479 -98 2027 123 3 3 chr3 20575703 20576004 -206948574 + AluSx SINE Alu 1 301 -11 3496 158 14 23 chr3 20576392 20576542 -206948036 + L1PA16 LINE L1 5522 5672 -494 2428 91 0 0 chr3 20576542 20576850 -206947728 + AluSc SINE Alu 1 308 -1 3496 158 14 23 chr3 20576850 20577350 -206947228 + L1PA16 LINE L1 5672 6166 0 198 0 0 0 chr3 20578657 20578679 -206945899 + (T)n Simple_repeat Simple_repeat 1 22 0 496 167 0 59 chr3 20578716 20578818 -206945760 - FLAM_A SINE Alu -41 101 6 2049 136 3 7 chr3 20579529 20579837 -206944741 + AluSx SINE Alu 1 307 -5 511 237 116 58 chr3 20579849 20580245 -206944333 + HAL1 LINE L1 1368 1786 -721 1231 158 133 65 chr3 20580289 20580567 -206944011 + AluSx SINE Alu 1 297 -15 301 252 48 10 chr3 20580574 20580677 -206943901 + L1MC5 LINE L1 7808 7914 -47 775 151 8 0 chr3 20580701 20580820 -206943758 + AluSq/x SINE Alu 1 120 -192 22 35 0 0 chr3 20580824 20580853 -206943725 + AT_rich Low_complexity Low_complexity 1 29 0 1947 133 3 24 chr3 20583145 20583439 -206941139 + AluSq SINE Alu 1 288 -25 441 0 0 0 chr3 20583467 20583516 -206941062 + (TG)n Simple_repeat Simple_repeat 2 50 0 517 204 0 106 chr3 20583740 20583872 -206940706 - FLAM_A SINE Alu -15 118 1 1839 107 0 0 chr3 20584108 20584341 -206940237 + AluSx SINE Alu 1 233 -79 916 198 24 6 chr3 20584660 20584827 -206939751 + AluJb SINE Alu 121 290 -22 2035 138 0 14 chr3 20584835 20585132 -206939446 + AluSx SINE Alu 1 293 -19 232 204 197 21 chr3 20585185 20585327 -206939251 + Tigger8 DNA MER2_type 326 492 -174 2204 90 0 0 chr3 20585363 20585640 -206938938 + AluSg SINE Alu 13 289 -21 225 336 32 40 chr3 20585812 20585937 -206938641 - MIR3 SINE MIR -41 167 44 2111 224 96 48 chr3 20585945 20586053 -206938525 + L1MB5 LINE L1 2211 2312 -3834 1821 143 3 21 chr3 20586053 20586363 -206938215 + AluJb SINE Alu 1 305 0 2111 224 96 48 chr3 20586363 20586936 -206937642 + L1MB5 LINE L1 2312 2964 -3182 2024 99 3 51 chr3 20586936 20587248 -206937330 + AluSq SINE Alu 1 297 -16 2111 224 96 48 chr3 20587248 20587616 -206936962 + L1MB5 LINE L1 2964 3313 -2833 277 83 62 0 chr3 20587644 20587692 -206936886 - L1MB7 LINE L1 -3 6181 6131 1605 215 39 2 chr3 20587693 20588134 -206936444 - L1MB7 LINE L1 -16 6168 5712 1042 208 43 111 chr3 20588131 20588258 -206936320 + L1MB5 LINE L1 3359 3493 -2653 * 2171 128 0 0 chr3 20588258 20588556 -206936022 + AluSg SINE Alu 1 298 -12 1042 208 43 111 chr3 20588556 20588913 -206935665 + L1MB5 LINE L1 3493 3810 -2336 893 192 47 10 chr3 20588981 20589174 -206935404 + L1MC1 LINE L1 6134 6333 0 2979 204 49 39 chr3 20589188 20589584 -206934994 + L1MB5 LINE L1 5324 5715 -459 2588 62 0 0 chr3 20589584 20589889 -206934689 + AluY SINE Alu 1 305 -6 2979 204 49 39 chr3 20589889 20590335 -206934243 + L1MB5 LINE L1 5715 6174 0 1322 89 0 12 chr3 20591415 20591584 -206932994 - AluSg/x SINE Alu -15 295 129 2068 115 30 13 chr3 20592353 20592658 -206931920 + AluSx SINE Alu 3 312 0 510 246 0 12 chr3 20592658 20592829 -206931749 + GA-rich Low_complexity Low_complexity 2 170 0 1277 167 0 14 chr3 20593157 20593372 -206931206 + AluJb SINE Alu 85 296 -16 889 246 79 30 chr3 20594337 20594642 -206929936 + Charlie1a DNA MER1_type 16 335 -1120 1796 152 37 3 chr3 20594784 20595080 -206929498 + AluJb SINE Alu 1 306 -6 1970 129 41 0 chr3 20595376 20595670 -206928908 + AluSx SINE Alu 1 306 -6 2342 59 31 3 chr3 20596688 20596978 -206927600 - AluY SINE Alu -13 298 1 1206 137 0 32 chr3 20597246 20597460 -206927118 - AluSg/x SINE Alu 0 303 96 1435 181 24 27 chr3 20597575 20597868 -206926710 + AluSx SINE Alu 1 292 -20 520 184 10 10 chr3 20597882 20597985 -206926593 + AluSq/x SINE Alu 4 106 -206 873 159 0 0 chr3 20598087 20598219 -206926359 - AluJb SINE Alu -180 132 1 851 216 43 4 chr3 20598278 20598533 -206926045 + L1M4 LINE L1 4904 5168 -978 1602 173 18 11 chr3 20598559 20598837 -206925741 + AluJo SINE Alu 1 280 -32 2094 131 3 0 chr3 20598838 20599128 -206925450 - AluSx SINE Alu -19 293 3 321 135 0 0 chr3 20599143 20599195 -206925383 + (A)n Simple_repeat Simple_repeat 1 52 0 609 319 101 14 chr3 20599434 20599782 -206924796 + MLT1H1 LTR MaLR 142 519 -36 277 293 0 10 chr3 20599796 20599895 -206924683 + MLT1H1-int LTR MaLR 4 101 -1270 1628 184 10 7 chr3 20600418 20600706 -206923872 - AluJo SINE Alu -23 289 1 240 223 29 58 chr3 20600755 20600858 -206923720 - L1M4 LINE L1 -4898 1644 1545 1750 114 42 19 chr3 20601266 20601529 -206923049 - AluSx SINE Alu -20 292 24 943 257 120 46 chr3 20602114 20602603 -206921975 + MLT1H1 LTR MaLR 50 555 0 1658 120 65 105 chr3 20602771 20603122 -206921456 - MER1B DNA MER1_type 0 337 1 1553 197 0 7 chr3 20603466 20603745 -206920833 + AluJo SINE Alu 2 278 -34 323 211 11 0 chr3 20603761 20603851 -206920727 + GA-rich Low_complexity Low_complexity 2 92 0 839 163 0 0 chr3 20604995 20605124 -206919454 - FLAM_C SINE Alu -4 129 1 742 184 0 0 chr3 20605216 20605341 -206919237 + AluJb SINE Alu 1 125 -187 628 278 72 12 chr3 20605881 20606212 -206918366 - L1MEc LINE L1 -4579 1682 1332 331 200 0 0 chr3 20606349 20606414 -206918164 - AluJ/FLAM SINE Alu -211 91 27 319 321 42 37 chr3 20606427 20606574 -206918004 - L1MEc LINE L1 -4885 1185 1035 827 147 0 37 chr3 20606574 20606710 -206917868 - FLAM_C SINE Alu -2 131 1 319 321 42 37 chr3 20606710 20606752 -206917826 - L1MEc LINE L1 -5035 1035 995 304 270 101 11 chr3 20606779 20606957 -206917621 - L1MEc LINE L1 -5069 1001 808 2158 105 7 3 chr3 20607341 20607635 -206916943 + AluSg SINE Alu 1 295 -15 2066 116 0 14 chr3 20608784 20609076 -206915502 - AluSx SINE Alu -24 288 1 21 0 0 0 chr3 20609077 20609098 -206915480 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 29 chr3 20609211 20609222 -206915356 + AT_rich Low_complexity Low_complexity 1 11 -22 1881 155 48 0 chr3 20609222 20609513 -206915065 - AluSx SINE Alu -7 305 1 23 0 0 29 chr3 20609513 20609535 -206915043 + AT_rich Low_complexity Low_complexity 11 33 0 663 184 8 8 chr3 20609546 20609671 -206914907 + AluJb SINE Alu 2 126 -186 196 161 32 16 chr3 20609677 20609739 -206914839 + A-rich Low_complexity Low_complexity 4 66 0 574 285 45 32 chr3 20610327 20610548 -206914030 - MIR SINE MIR -26 236 13 381 182 26 0 chr3 20610828 20610905 -206913673 + AluS SINE Alu 221 299 -3 2311 122 0 0 chr3 20611255 20611567 -206913011 + AluSx SINE Alu 1 312 0 929 176 0 108 chr3 20611683 20611933 -206912645 + AluJb SINE Alu 90 312 0 2590 49 0 7 chr3 20612217 20612524 -206912054 - AluYa5 SINE Alu -6 305 1 23 0 0 0 chr3 20613707 20613730 -206910848 + AT_rich Low_complexity Low_complexity 1 23 0 1121 187 123 30 chr3 20613747 20613772 -206910806 - AluJo SINE Alu -9 293 272 1760 73 0 0 chr3 20613772 20613990 -206910588 + AluY SINE Alu 84 301 -10 1121 187 123 30 chr3 20613990 20614232 -206910346 - AluJo SINE Alu -30 272 1 2353 80 0 13 chr3 20614708 20615021 -206909557 - AluY SINE Alu -2 309 1 1251 152 0 0 chr3 20615156 20615334 -206909244 + AluSg/x SINE Alu 117 294 -16 522 199 0 43 chr3 20615689 20615797 -206908781 - Charlie1 DNA MER1_type -5 2756 2654 1814 192 49 0 chr3 20615797 20616146 -206908432 - MER47A DNA MER2_type 0 366 1 522 199 0 43 chr3 20616146 20616178 -206908400 - Charlie1 DNA MER1_type -107 2654 2622 * 575 219 33 13 chr3 20616176 20616327 -206908251 - Charlie1 DNA MER1_type -2541 220 67 214 243 117 39 chr3 20616700 20616803 -206907775 - L3 LINE CR1 -322 1255 1145 943 108 0 0 chr3 20617166 20617295 -206907283 - FLAM_C SINE Alu -4 129 1 253 222 16 0 chr3 20617323 20617386 -206907192 + FLAM_A SINE Alu 69 132 -1 504 213 0 41 chr3 20617772 20617894 -206906684 - FRAM SINE Alu -16 160 44 1074 176 38 86 chr3 20618020 20618287 -206906291 - AluJb SINE Alu -15 297 44 2103 133 0 0 chr3 20618525 20618826 -206905752 + AluSx SINE Alu 1 301 -11 1548 185 3 55 chr3 20618827 20619135 -206905443 - AluJo SINE Alu -20 292 1 1373 211 39 3 chr3 20619139 20619424 -206905154 - AluJo SINE Alu -6 296 2 395 251 66 33 chr3 20619791 20620034 -206904544 - L1ME3A LINE L1 -270 5900 5650 183 188 0 0 chr3 20620037 20620069 -206904509 + MER5C DNA MER1_type 1 32 -292 1433 194 86 0 chr3 20620267 20620422 -206904156 - AluJb SINE Alu -10 302 162 185 0 40 0 chr3 20620422 20620447 -206904131 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1433 194 86 0 chr3 20620447 20620569 -206904009 - AluJb SINE Alu -150 162 1 240 59 0 0 chr3 20620710 20620744 -206903834 + (TTG)n Simple_repeat Simple_repeat 1 34 0 2072 115 0 0 chr3 20620745 20621024 -206903554 - AluSx SINE Alu -32 280 2 441 254 193 33 chr3 20621031 20621244 -206903334 - L1ME3A LINE L1 -751 5395 5149 1462 189 8 11 chr3 20621263 20621528 -206903050 + AluJo SINE Alu 5 268 -44 599 355 81 24 chr3 20621632 20621820 -206902758 - L1ME3A LINE L1 -1768 4378 4202 1831 175 7 0 chr3 20621820 20622128 -206902450 - AluJb SINE Alu -2 310 1 599 355 81 24 chr3 20622128 20622395 -206902183 - L1ME3A LINE L1 -1944 4202 3897 489 271 64 61 chr3 20622563 20623124 -206901454 - L1ME3A LINE L1 -2467 3679 3117 251 281 22 22 chr3 20623277 20623416 -206901162 - L1ME3A LINE L1 -3330 2816 2678 396 0 0 0 chr3 20623573 20623617 -206900961 + (TTGG)n Simple_repeat Simple_repeat 2 45 0 2002 127 0 7 chr3 20623617 20623901 -206900677 - AluSg SINE Alu -28 282 1 21 36 0 0 chr3 20624135 20624163 -206900415 + AT_rich Low_complexity Low_complexity 1 28 0 689 250 122 44 chr3 20624177 20624497 -206900081 - L1ME3A LINE L1 -26 6144 5800 2418 81 7 3 chr3 20624941 20625248 -206899330 + AluY SINE Alu 1 308 -3 366 228 96 32 chr3 20625295 20625545 -206899033 + L1 LINE L1 3745 4010 -2136 390 258 159 34 chr3 20625670 20625903 -206898675 + L1M4 LINE L1 4224 4485 -1661 858 288 66 22 chr3 20625912 20626367 -206898211 + L1M4 LINE L1 4635 5109 -1037 262 181 12 72 chr3 20626732 20626898 -206897680 + (TATATG)n Simple_repeat Simple_repeat 5 160 0 2114 141 0 19 chr3 20627727 20628040 -206896538 - AluSx SINE Alu -5 307 1 2007 125 3 16 chr3 20628748 20629052 -206895526 + AluSx SINE Alu 1 300 -12 995 156 82 130 chr3 20629690 20629829 -206894749 + AluJo SINE Alu 1 145 -167 1536 168 31 31 chr3 20629829 20630115 -206894463 - AluJo SINE Alu -26 286 1 1874 131 0 55 chr3 20630122 20630450 -206894128 - AluSx SINE Alu -2 310 1 995 156 82 130 chr3 20630450 20630572 -206894006 + AluJo SINE Alu 151 257 -55 21 36 0 0 chr3 20630600 20630628 -206893950 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 20630716 20630741 -206893837 + AT_rich Low_complexity Low_complexity 1 25 0 2415 77 0 7 chr3 20631015 20631314 -206893264 - AluY SINE Alu -14 297 1 372 115 16 0 chr3 20631333 20631394 -206893184 - MER50 LTR ERV1 -174 560 499 1816 172 0 0 chr3 20631850 20632141 -206892437 + AluJo SINE Alu 1 291 -21 2397 80 0 10 chr3 20632258 20632559 -206892019 + AluSc SINE Alu 2 299 -10 21 36 0 0 chr3 20632959 20632987 -206891591 + AT_rich Low_complexity Low_complexity 1 28 0 234 238 109 0 chr3 20633049 20633150 -206891428 - MIR SINE MIR -12 250 139 1504 129 0 0 chr3 20633385 20633587 -206890991 - AluSx SINE Alu -110 202 1 1869 174 0 3 chr3 20634244 20634548 -206890030 + AluSx SINE Alu 1 303 -9 372 207 180 9 chr3 20634566 20634677 -206889901 + L1 LINE L1 4195 4324 -1822 1579 191 0 30 chr3 20634807 20635111 -206889467 + AluJo SINE Alu 1 295 -17 1761 117 0 119 chr3 20635290 20635656 -206888922 - AluJo SINE Alu 0 325 1 888 161 0 0 chr3 20636018 20636155 -206888423 - AluJo SINE Alu -175 137 1 1966 165 0 0 chr3 20636194 20636491 -206888087 + AluSx SINE Alu 1 297 -15 2267 105 0 0 chr3 20636619 20636930 -206887648 + AluSx SINE Alu 1 311 0 2253 100 0 3 chr3 20637250 20637539 -206887039 + AluSx SINE Alu 1 288 -24 205 290 0 0 chr3 20638281 20638350 -206886228 - L3 LINE CR1 -890 687 619 2375 86 3 0 chr3 20639166 20639501 -206885077 + AluSp SINE Alu 1 336 0 359 314 33 33 chr3 20639747 20639957 -206884621 - MIR SINE MIR -32 230 21 2192 83 14 0 chr3 20640256 20640585 -206883993 + AluY SINE Alu 1 333 0 1178 182 147 23 chr3 20640646 20640904 -206883674 - AluJb SINE Alu -8 294 5 1999 142 3 0 chr3 20641297 20641586 -206882992 + AluSx SINE Alu 1 290 -22 1255 181 0 5 chr3 20641810 20642033 -206882545 + AluSg/x SINE Alu 85 306 0 1407 312 129 21 chr3 20642073 20643015 -206881563 + L2 LINE L2 1847 2890 -424 2208 108 10 10 chr3 20643349 20643655 -206880923 + AluSx SINE Alu 1 306 -6 435 241 152 0 chr3 20644050 20644162 -206880416 + FLAM_A SINE Alu 1 129 -4 729 222 59 82 chr3 20644447 20644778 -206879800 + L1MC5 LINE L1 7306 7628 -333 2184 122 0 10 chr3 20644778 20645082 -206879496 - AluJb SINE Alu -11 301 1 729 222 59 82 chr3 20645082 20645138 -206879440 + L1MC5 LINE L1 7628 7684 -277 822 167 118 48 chr3 20645149 20645377 -206879201 + AluJo SINE Alu 63 306 -6 2003 122 40 0 chr3 20645377 20645655 -206878923 + AluSx SINE Alu 1 289 -23 238 254 64 9 chr3 20645673 20645783 -206878795 + L1MC5 LINE L1 7709 7824 -137 * 794 139 63 57 chr3 20645774 20645932 -206878646 + L1PB1 LINE L1 5993 6151 0 37 0 0 0 chr3 20646104 20646141 -206878437 + AT_rich Low_complexity Low_complexity 1 37 0 2227 76 14 7 chr3 20646141 20646429 -206878149 - AluY SINE Alu -21 290 1 2179 128 7 3 chr3 20646434 20646739 -206877839 - AluSq SINE Alu -7 306 1 1859 167 0 31 chr3 20646739 20647055 -206877523 - AluSx SINE Alu -5 307 1 2240 110 0 7 chr3 20647247 20647548 -206877030 - AluSq SINE Alu -13 300 2 2050 260 99 12 chr3 20647568 20648207 -206876371 - MER44D DNA MER2_type -1 604 39 21 36 0 0 chr3 20648209 20648237 -206876341 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 20648360 20648382 -206876196 + AT_rich Low_complexity Low_complexity 1 22 0 2077 114 4 4 chr3 20648384 20648665 -206875913 + AluSg1 SINE Alu 1 281 -28 188 33 0 33 chr3 20648673 20648703 -206875875 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1574 191 30 20 chr3 20649510 20649813 -206874765 + AluJb SINE Alu 1 306 -6 805 238 0 6 chr3 20650402 20650574 -206874004 - AluJo SINE Alu -140 172 2 464 291 0 28 chr3 20650576 20650717 -206873861 - FRAM SINE Alu -22 154 18 2449 86 0 0 chr3 20650784 20651087 -206873491 + AluSp SINE Alu 1 303 -10 21 0 0 0 chr3 20651369 20651390 -206873188 + AT_rich Low_complexity Low_complexity 1 21 0 207 307 44 44 chr3 20651511 20651625 -206872953 + L3 LINE CR1 985 1098 -479 1388 170 4 13 chr3 20651735 20651965 -206872613 + AluJo SINE Alu 2 229 -83 511 276 0 0 chr3 20652881 20652997 -206871581 + FLAM_A SINE Alu 1 116 -17 186 43 0 0 chr3 20653001 20653024 -206871554 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 2225 124 0 0 chr3 20654138 20654437 -206870141 + AluSq SINE Alu 1 299 -14 2103 119 3 0 chr3 20654525 20654811 -206869767 + AluSx SINE Alu 2 288 -24 1834 80 13 0 chr3 20655547 20655773 -206868805 + AluSg SINE Alu 1 229 -81 856 212 10 56 chr3 20655773 20655971 -206868607 + AluJo SINE Alu 90 278 -34 1902 175 0 0 chr3 20656472 20656769 -206867809 - AluJb SINE Alu -15 297 1 2122 139 3 0 chr3 20657125 20657427 -206867151 + AluSx SINE Alu 1 303 -9 585 252 8 0 chr3 20657868 20657991 -206866587 + MLT1A1 LTR MaLR 19 142 -223 652 229 0 14 chr3 20657991 20658131 -206866447 + FRAM SINE Alu 1 136 -40 1950 121 20 7 chr3 20658293 20658591 -206865987 + AluSx SINE Alu 3 304 -8 1960 151 0 7 chr3 20658594 20658885 -206865693 + AluSx SINE Alu 5 293 -19 2116 112 0 11 chr3 20658896 20659219 -206865359 + AluSx SINE Alu 1 320 0 327 250 0 23 chr3 20659219 20659307 -206865271 + L1M4 LINE L1 2648 2733 -3413 346 203 145 100 chr3 20659832 20660073 -206864505 + L1MC4 LINE L1 7779 8030 -12 2301 104 0 3 chr3 20660096 20660404 -206864174 + AluSx SINE Alu 1 307 -5 652 159 0 48 chr3 20660446 20660572 -206864006 + FLAM_C SINE Alu 24 143 0 2092 121 0 7 chr3 20660640 20660945 -206863633 + AluSg SINE Alu 1 303 0 946 206 20 53 chr3 20661343 20661590 -206862988 + AluJb SINE Alu 1 239 -73 1882 134 65 0 chr3 20661907 20662198 -206862380 + AluSg SINE Alu 1 310 0 2296 77 16 19 chr3 20662275 20662586 -206861992 + AluSq SINE Alu 1 310 -3 213 196 10 108 chr3 20662995 20663053 -206861525 - MIR SINE MIR -50 212 167 2421 75 0 0 chr3 20663053 20663346 -206861232 - AluSc SINE Alu -16 293 1 213 196 10 108 chr3 20663346 20663389 -206861189 - MIR SINE MIR -95 167 121 281 236 34 0 chr3 20663397 20663486 -206861092 + L1MEd LINE L1 13 104 -6015 849 179 49 19 chr3 20663739 20663754 -206860824 + AluSg/x SINE Alu 121 134 -178 2022 156 0 0 chr3 20663754 20664055 -206860523 + AluSx SINE Alu 1 301 -11 849 179 49 19 chr3 20664055 20664201 -206860377 + AluSg/x SINE Alu 134 287 -25 2104 105 17 0 chr3 20664214 20664510 -206860068 + AluY SINE Alu 1 301 -10 1247 255 63 59 chr3 20664550 20664570 -206860008 + L1ME LINE L1 5009 5027 -1135 2051 117 0 29 chr3 20664570 20664704 -206859874 + AluSg SINE Alu 1 137 -173 2256 113 3 0 chr3 20664704 20665013 -206859565 + AluSg SINE Alu 1 310 0 2051 117 0 29 chr3 20665013 20665186 -206859392 + AluSg SINE Alu 137 299 -11 1247 255 63 59 chr3 20665186 20665245 -206859333 + L1ME LINE L1 5027 5084 -1078 2500 76 3 0 chr3 20665245 20665549 -206859029 + AluSp SINE Alu 1 305 -8 1247 255 63 59 chr3 20665549 20665618 -206858960 + L1ME LINE L1 5084 5151 -1011 660 284 98 0 chr3 20665618 20665822 -206858756 + MER58A DNA MER1_type 1 224 0 1247 255 63 59 chr3 20665822 20665962 -206858616 + L1ME LINE L1 5151 5289 -873 1736 173 10 10 chr3 20665962 20666263 -206858315 + AluJo SINE Alu 1 301 -11 1247 255 63 59 chr3 20666263 20666488 -206858090 + L1ME LINE L1 5289 5511 -651 2260 101 0 25 chr3 20666488 20666805 -206857773 + AluY SINE Alu 1 309 -2 1247 255 63 59 chr3 20666805 20667098 -206857480 + L1ME LINE L1 5511 5812 -350 1268 208 0 4 chr3 20667136 20667377 -206857201 - AluJo SINE Alu -35 277 38 470 229 25 34 chr3 20667418 20667536 -206857042 + AluJb SINE Alu 179 295 -17 469 184 68 150 chr3 20667537 20667684 -206856894 + MER58B DNA MER1_type 177 311 -30 29 0 0 0 chr3 20667703 20667732 -206856846 + AT_rich Low_complexity Low_complexity 1 29 0 1430 122 83 0 chr3 20667745 20667975 -206856603 + AluSp SINE Alu 1 249 -64 225 0 0 0 chr3 20668117 20668142 -206856436 + (A)n Simple_repeat Simple_repeat 1 25 0 694 247 12 6 chr3 20668164 20668330 -206856248 + FAM SINE Alu 2 168 -7 1855 121 89 11 chr3 20668330 20668610 -206855968 + AluSq SINE Alu 1 302 -11 597 145 237 93 chr3 20668630 20668703 -206855875 + L1MB2 LINE L1 5727 5788 -393 2193 106 0 7 chr3 20668703 20668995 -206855583 - AluSg SINE Alu -20 290 1 2050 131 0 10 chr3 20668997 20669294 -206855284 - AluSx SINE Alu -18 294 1 597 145 237 93 chr3 20669294 20669451 -206855127 + L1MB2 LINE L1 5788 5990 -191 * 626 222 118 0 chr3 20669446 20669590 -206854988 - L1MB3 LINE L1 -229 5954 5794 585 227 16 15 chr3 20669592 20669748 -206854830 + L1MB2 LINE L1 6005 6162 -6 1100 89 0 20 chr3 20670295 20670441 -206854137 + AluSq/x SINE Alu 1 143 -170 2112 108 4 4 chr3 20670445 20670723 -206853855 + AluSg SINE Alu 3 280 -30 2497 55 3 7 chr3 20671544 20671852 -206852726 - AluY SINE Alu -4 307 1 1624 114 0 0 chr3 20671954 20672173 -206852405 - AluSc SINE Alu -2 307 89 2357 66 0 7 chr3 20672186 20672489 -206852089 - AluY SINE Alu 0 311 11 763 100 0 0 chr3 20672489 20672589 -206851989 - AluSg/x SINE Alu -79 233 134 2260 109 3 0 chr3 20672589 20672893 -206851685 - AluSp SINE Alu -7 306 2 2222 109 0 7 chr3 20673048 20673351 -206851227 - AluSg SINE Alu -9 301 1 618 159 0 37 chr3 20673357 20673502 -206851076 - AluSg/x SINE Alu 0 312 191 590 238 63 0 chr3 20673545 20673688 -206850890 + AluSg/x SINE Alu 78 229 -83 2177 111 7 0 chr3 20673691 20673980 -206850598 - AluSx SINE Alu -21 291 1 1597 164 0 103 chr3 20673983 20674152 -206850426 - AluJb SINE Alu -12 300 115 2558 54 0 0 chr3 20674152 20674446 -206850132 - AluY SINE Alu -17 294 1 1597 164 0 103 chr3 20674446 20674467 -206850111 - AluJb SINE Alu -197 115 93 2461 90 0 0 chr3 20674467 20674779 -206849799 - AluSx SINE Alu 0 312 1 1597 164 0 103 chr3 20674779 20674917 -206849661 - AluJb SINE Alu -219 93 5 649 200 0 0 chr3 20674922 20675037 -206849541 + MER58A DNA MER1_type 42 156 0 2461 92 0 0 chr3 20675086 20675389 -206849189 - AluSc SINE Alu -6 303 1 2269 117 3 3 chr3 20675389 20675698 -206848880 - AluSq SINE Alu -4 309 1 297 221 0 0 chr3 20675703 20675771 -206848807 + Charlie2 DNA MER1_type 1817 1884 -978 1855 157 27 0 chr3 20675793 20676093 -206848485 - AluSx SINE Alu -4 308 1 411 190 13 0 chr3 20676104 20676183 -206848395 - FLAM_A SINE Alu -22 120 41 647 243 169 23 chr3 20676210 20676511 -206848067 - L1ME2 LINE L1 -10 6154 5810 358 167 0 0 chr3 20676525 20676585 -206847993 - L1ME2 LINE L1 -833 5313 5254 877 157 13 7 chr3 20676585 20676738 -206847840 - AluSq SINE Alu -16 297 144 2042 111 57 3 chr3 20676972 20677269 -206847309 + AluSq SINE Alu 1 313 0 1433 156 70 30 chr3 20677327 20677531 -206847047 - AluJb SINE Alu 0 330 109 180 0 0 0 chr3 20677531 20677551 -206847027 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1433 156 70 30 chr3 20677551 20677665 -206846913 - AluJb SINE Alu -221 109 1 21 57 0 0 chr3 20677692 20677727 -206846851 + AT_rich Low_complexity Low_complexity 1 35 0 1897 151 20 3 chr3 20677759 20678051 -206846527 + AluJo SINE Alu 1 297 -15 292 226 157 35 chr3 20678063 20678178 -206846400 + MIR SINE MIR 117 245 -17 217 239 65 0 chr3 20678150 20678196 -206846382 + L2 LINE L2 3222 3270 -2 * 658 140 0 18 chr3 20678198 20678312 -206846266 + FRAM SINE Alu 65 176 0 1963 115 15 0 chr3 20679210 20679480 -206845098 - AluSx SINE Alu 0 312 39 304 196 0 76 chr3 20679634 20679726 -206844852 - L2 LINE L2 -1 3312 3228 25 31 0 0 chr3 20680500 20680532 -206844046 + GC_rich Low_complexity Low_complexity 1 32 0 223 295 9 19 chr3 20680767 20680872 -206843706 + (CCG)n Simple_repeat Simple_repeat 2 105 0 208 302 11 44 chr3 20680819 20681001 -206843577 + C-rich Low_complexity Low_complexity 3 178 0 * 228 299 248 6 chr3 20681636 20681793 -206842785 + L2 LINE L2 3119 3313 0 1443 152 47 19 chr3 20681852 20682108 -206842470 + AluJb SINE Alu 33 295 -17 304 116 0 0 chr3 20682232 20682275 -206842303 + MER4E LTR ERV1 652 694 -72 21 0 0 0 chr3 20682277 20682298 -206842280 + AT_rich Low_complexity Low_complexity 1 21 0 2195 100 3 10 chr3 20682320 20682611 -206841967 + AluSg SINE Alu 1 289 -21 1183 210 91 30 chr3 20682612 20683038 -206841540 - L1MC4 LINE L1 0 8042 7501 403 210 161 0 chr3 20683044 20683187 -206841391 - L1MC4 LINE L1 -597 7445 7280 587 192 0 48 chr3 20683187 20683312 -206841266 - AluJb SINE Alu -6 306 188 2609 71 0 0 chr3 20683335 20683643 -206840935 + AluY SINE Alu 1 308 -3 2123 115 7 7 chr3 20683652 20683947 -206840631 + AluSp SINE Alu 1 295 -18 2043 112 3 40 chr3 20683967 20684102 -206840476 + AluSx SINE Alu 1 139 -173 2125 119 0 13 chr3 20684102 20684404 -206840174 + AluSx SINE Alu 1 298 -14 2043 112 3 40 chr3 20684404 20684571 -206840007 + AluSx SINE Alu 139 292 -20 293 243 13 1 chr3 20684654 20684743 -206839835 - L1MC4 LINE L1 -1288 6537 6432 2186 112 10 10 chr3 20684921 20685053 -206839525 + AluSx SINE Alu 1 132 -180 2212 130 0 0 chr3 20685053 20685360 -206839218 + AluSg SINE Alu 1 307 -3 2186 112 10 10 chr3 20685360 20685523 -206839055 + AluSx SINE Alu 131 296 -16 1472 182 54 11 chr3 20685532 20685812 -206838766 + AluJb SINE Alu 1 292 -20 1814 157 3 46 chr3 20685866 20686049 -206838529 - AluJb SINE Alu -2 310 121 225 108 0 0 chr3 20686049 20686086 -206838492 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2188 84 7 11 chr3 20686086 20686366 -206838212 - AluY SINE Alu -32 279 1 1814 157 3 46 chr3 20686366 20686511 -206838067 - AluJb SINE Alu -189 123 1 452 223 36 54 chr3 20686581 20686705 -206837873 - L1M4 LINE L1 -2537 3609 3487 2230 125 3 0 chr3 20686705 20687002 -206837576 - AluSx SINE Alu -14 298 1 452 223 36 54 chr3 20687002 20687043 -206837535 - L1M4 LINE L1 -2659 3487 3447 1128 154 0 0 chr3 20687047 20687216 -206837362 - AluSc SINE Alu -9 300 132 2401 88 0 31 chr3 20687216 20687536 -206837042 - AluSp SINE Alu -3 310 1 1633 185 3 14 chr3 20687548 20687840 -206836738 - AluJo SINE Alu -13 299 11 1229 156 120 58 chr3 20687852 20688014 -206836564 - MER74A LTR ERVL -250 308 121 2453 72 0 10 chr3 20688014 20688320 -206836258 - AluY SINE Alu -8 303 1 1229 156 120 58 chr3 20688320 20688432 -206836146 - MER74A LTR ERVL -437 121 17 994 157 0 6 chr3 20688567 20688726 -206835852 + AluSg/x SINE Alu 145 302 -8 1959 99 3 48 chr3 20688735 20689050 -206835528 + AluSg SINE Alu 1 302 0 2110 119 31 0 chr3 20689074 20689368 -206835210 + AluSx SINE Alu 1 303 -9 2195 114 7 0 chr3 20689368 20689667 -206834911 + AluSx SINE Alu 1 301 -11 571 279 65 4 chr3 20689701 20689930 -206834648 + L1MC5 LINE L1 7637 7879 -82 478 173 36 45 chr3 20689930 20690040 -206834538 - LTR40a LTR ERVL 0 519 411 198 0 0 0 chr3 20690040 20690062 -206834516 + (CAAAA)n Simple_repeat Simple_repeat 5 26 0 1227 180 19 0 chr3 20690079 20690290 -206834288 + AluJb SINE Alu 83 297 -15 2144 126 7 0 chr3 20690291 20690592 -206833986 + AluSx SINE Alu 2 304 -8 705 222 0 47 chr3 20690592 20690763 -206833815 + AluJo/FRAM SINE Alu 137 299 -3 2154 113 13 10 chr3 20690811 20691113 -206833465 - AluSx SINE Alu -9 303 1 765 184 63 76 chr3 20691157 20691380 -206833198 + MLT1B LTR MaLR 1 220 -170 1644 175 4 11 chr3 20691392 20691660 -206832918 - AluJb SINE Alu -38 274 9 2282 122 0 0 chr3 20691672 20691983 -206832595 - AluSx SINE Alu -1 311 1 1584 180 6 42 chr3 20691983 20692101 -206832477 - AluJb SINE Alu -9 303 182 2391 100 3 0 chr3 20692101 20692400 -206832178 - AluSg SINE Alu -10 300 1 1584 180 6 42 chr3 20692400 20692592 -206831986 - AluJb SINE Alu -130 182 4 2202 96 11 0 chr3 20692673 20692985 -206831593 - AluSp SINE Alu 0 315 1 1974 161 3 3 chr3 20693005 20693309 -206831269 + AluJb SINE Alu 1 304 -8 2023 142 7 3 chr3 20693710 20694006 -206830572 + AluSx SINE Alu 1 297 -15 2236 90 20 10 chr3 20694617 20694916 -206829662 - AluSq SINE Alu -11 302 1 23 68 0 0 chr3 20696107 20696151 -206828427 + GC_rich Low_complexity Low_complexity 1 44 0 2301 85 0 0 chr3 20696943 20697245 -206827333 + AluSq SINE Alu 1 302 0 420 237 127 29 chr3 20697379 20697552 -206827026 + MIR SINE MIR 7 196 -66 2229 98 0 7 chr3 20698203 20698511 -206826067 - AluSx SINE Alu 0 306 1 1563 150 44 44 chr3 20698670 20698805 -206825773 - AluSx SINE Alu -18 294 160 2324 104 0 3 chr3 20698805 20699112 -206825466 - AluSg SINE Alu -4 306 1 2310 102 0 3 chr3 20699114 20699408 -206825170 - AluSg SINE Alu -10 300 8 1563 150 44 44 chr3 20699408 20699563 -206825015 - AluSx SINE Alu -152 160 1 2296 101 3 10 chr3 20699569 20699875 -206824703 - AluSp SINE Alu -6 307 4 1935 154 3 20 chr3 20699881 20700186 -206824392 - AluJo SINE Alu -12 300 1 2316 111 0 3 chr3 20700238 20700545 -206824033 - AluSx SINE Alu -6 306 1 1637 82 23 14 chr3 20700548 20700767 -206823811 - AluSq SINE Alu -4 309 89 2582 58 0 10 chr3 20700900 20701212 -206823366 - AluY SINE Alu -2 309 1 2101 113 0 17 chr3 20702621 20702922 -206821656 - AluSx SINE Alu -16 296 1 335 346 79 26 chr3 20702954 20703182 -206821396 + L2 LINE L2 3024 3263 -9 1456 128 8 12 chr3 20703195 20703446 -206821132 - MSTA LTR MaLR 0 428 179 2041 118 10 7 chr3 20703450 20703746 -206820832 + AluSx SINE Alu 1 297 -15 211 338 73 59 chr3 20703933 20704137 -206820441 - L2 LINE L2 -35 3237 3031 2189 103 0 3 chr3 20704185 20704492 -206820086 - AluSc SINE Alu 0 306 1 2463 80 0 3 chr3 20704545 20704844 -206819734 - AluSc SINE Alu -11 298 1 543 229 93 0 chr3 20704894 20705034 -206819544 - L1MC5 LINE L1 -67 7894 7742 2638 71 0 0 chr3 20705173 20705484 -206819094 - AluSx SINE Alu 0 312 2 854 173 0 0 chr3 20705641 20705774 -206818804 - AluJb SINE Alu -179 133 1 28 48 0 0 chr3 20706122 20706164 -206818414 + GC_rich Low_complexity Low_complexity 1 42 0 557 115 0 21 chr3 20707756 20707852 -206816726 + AluSp/q SINE Alu 220 313 0 2326 91 13 10 chr3 20707868 20708176 -206816402 - AluY SINE Alu -2 309 1 2433 76 0 0 chr3 20708229 20708520 -206816058 - AluY SINE Alu -10 301 11 324 48 0 0 chr3 20708564 20708606 -206815972 + (TC)n Simple_repeat Simple_repeat 2 43 0 189 0 0 0 chr3 20708639 20708660 -206815918 + (TG)n Simple_repeat Simple_repeat 2 22 0 1638 184 0 21 chr3 20708669 20708952 -206815626 - AluJb SINE Alu -35 277 1 36 0 0 0 chr3 20708952 20708988 -206815590 + AT_rich Low_complexity Low_complexity 1 36 0 1740 140 53 4 chr3 20709025 20709289 -206815289 - AluSx SINE Alu -14 298 22 580 195 0 16 chr3 20709299 20709422 -206815156 - FLAM_C SINE Alu -1 142 22 286 245 39 2 chr3 20709442 20709529 -206815049 - L1MB3 LINE L1 -145 6029 5942 400 158 26 16 chr3 20709764 20709871 -206814707 + AluS SINE Alu 1 66 -235 311 143 0 95 chr3 20709986 20710049 -206814529 + AluSq/x SINE Alu 78 133 -169 2244 96 14 0 chr3 20710199 20710492 -206814086 + AluSx SINE Alu 2 298 -14 189 0 0 0 chr3 20711028 20711049 -206813529 + (T)n Simple_repeat Simple_repeat 1 21 0 2116 93 45 45 chr3 20711279 20711591 -206812987 + AluSx SINE Alu 1 312 0 643 193 9 0 chr3 20711609 20711723 -206812855 + FLAM_C SINE Alu 3 117 -26 1808 99 0 0 chr3 20711734 20711956 -206812622 - AluY SINE Alu -89 222 1 183 100 0 0 chr3 20711971 20712001 -206812577 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 802 184 0 0 chr3 20712024 20712160 -206812418 - AluJo SINE Alu -176 136 1 267 79 0 0 chr3 20712850 20712888 -206811690 + (A)n Simple_repeat Simple_repeat 1 38 0 2494 73 0 0 chr3 20713490 20713792 -206810786 - AluSc SINE Alu -7 302 1 22 0 0 0 chr3 20714045 20714067 -206810511 + AT_rich Low_complexity Low_complexity 1 22 0 2364 98 0 3 chr3 20717167 20717462 -206807116 + AluSx SINE Alu 1 294 -18 1969 149 0 34 chr3 20718045 20718083 -206806495 - AluSx SINE Alu 0 312 274 225 0 0 0 chr3 20718083 20718108 -206806470 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1969 149 0 34 chr3 20718108 20718392 -206806186 - AluSx SINE Alu -38 274 1 2235 106 7 10 chr3 20718403 20718705 -206805873 - AluSp SINE Alu -12 301 1 2056 123 7 7 chr3 20718751 20719035 -206805543 - AluSx SINE Alu -28 284 1 866 221 26 40 chr3 20719053 20719279 -206805299 - MER58A DNA MER1_type -1 223 1 1962 133 29 80 chr3 20719448 20719641 -206804937 - THE1B LTR MaLR 0 364 163 2303 127 0 0 chr3 20719641 20719948 -206804630 + AluSg SINE Alu 1 307 -3 2520 90 0 0 chr3 20719948 20720259 -206804319 + AluY SINE Alu 1 311 0 1962 133 29 80 chr3 20720259 20720441 -206804137 - THE1B LTR MaLR -199 165 7 2563 81 0 0 chr3 20720491 20720798 -206803780 - AluSc SINE Alu -2 307 1 543 229 93 0 chr3 20720848 20720988 -206803590 - L1MC5 LINE L1 -67 7894 7742 2638 71 0 0 chr3 20721127 20721438 -206803140 - AluSx SINE Alu 0 312 2 854 173 0 0 chr3 20721595 20721728 -206802850 - AluJb SINE Alu -179 133 1 28 48 0 0 chr3 20722076 20722118 -206802460 + GC_rich Low_complexity Low_complexity 1 42 0 2356 73 16 35 chr3 20723572 20723888 -206800690 - AluSq SINE Alu -3 310 1 1680 152 0 31 chr3 20724978 20725268 -206799310 - AluJo SINE Alu -3 309 29 2010 159 0 3 chr3 20725313 20725621 -206798957 + AluJo SINE Alu 1 307 -5 1761 64 0 0 chr3 20725626 20725828 -206798750 + AluY SINE Alu 1 202 -109 291 149 0 0 chr3 20725833 20725880 -206798698 + AluY SINE Alu 253 299 -9 252 0 0 0 chr3 20726424 20726452 -206798126 + (TA)n Simple_repeat Simple_repeat 2 29 0 2209 113 3 0 chr3 20726473 20726766 -206797812 - AluSq SINE Alu -5 308 15 1858 120 36 29 chr3 20726959 20727268 -206797310 - AluY SINE Alu 0 311 1 2124 114 3 7 chr3 20727272 20727562 -206797016 - AluJb SINE Alu -23 289 1 1929 173 86 18 chr3 20727748 20728130 -206796448 - MSTB LTR MaLR -18 408 1 881 125 0 22 chr3 20728342 20728478 -206796100 - FLAM_C SINE Alu 0 133 1 207 100 0 0 chr3 20728587 20728617 -206795961 + (T)n Simple_repeat Simple_repeat 1 30 0 825 128 8 15 chr3 20728745 20728878 -206795700 - FLAM_C SINE Alu -1 132 1 180 0 0 0 chr3 20729021 20729041 -206795537 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 505 188 119 0 chr3 20729041 20729142 -206795436 - FLAM_A SINE Alu -29 113 1 263 231 0 103 chr3 20729246 20729293 -206795285 + MER20 DNA MER1_type 1 39 -180 2281 128 0 3 chr3 20729293 20729606 -206794972 - AluSx SINE Alu 0 312 1 263 231 0 103 chr3 20729606 20729636 -206794942 + MER20 DNA MER1_type 39 70 -149 * 297 221 0 0 chr3 20729611 20729679 -206794899 + Charlie2 DNA MER1_type 1817 1884 -978 1809 157 30 0 chr3 20729701 20730000 -206794578 - AluSx SINE Alu -4 308 1 411 190 13 0 chr3 20730011 20730090 -206794488 - FLAM_A SINE Alu -22 120 41 647 243 169 23 chr3 20730117 20730418 -206794160 - L1ME2 LINE L1 -10 6154 5810 358 167 0 0 chr3 20730432 20730492 -206794086 - L1ME2 LINE L1 -833 5313 5254 736 184 0 21 chr3 20730492 20730633 -206793945 - AluSg/x SINE Alu -16 296 159 420 98 0 0 chr3 20730633 20730694 -206793884 + Alu SINE Alu 241 301 -1 2130 135 7 3 chr3 20730699 20731003 -206793575 + AluSq SINE Alu 1 305 -8 1390 161 45 15 chr3 20731009 20731276 -206793302 + AluSg1 SINE Alu 1 275 -34 951 114 8 0 chr3 20732141 20732272 -206792306 - AluSq/x SINE Alu -180 133 2 2143 123 3 3 chr3 20732358 20732658 -206791920 - AluSg SINE Alu -10 300 1 234 0 0 0 chr3 20733781 20733807 -206790771 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1339 207 17 47 chr3 20733965 20734265 -206790313 + AluJo SINE Alu 1 291 -21 2278 93 17 10 chr3 20734530 20734832 -206789746 - AluSp SINE Alu -9 304 1 1781 250 60 19 chr3 20734966 20735486 -206789092 - MER74B LTR ERVL -27 595 55 2271 84 10 35 chr3 20735592 20735903 -206788675 - AluSg SINE Alu -7 303 1 1185 139 5 39 chr3 20736993 20737201 -206787377 - AluJo SINE Alu -3 309 109 1632 128 0 4 chr3 20737303 20737530 -206787048 - AluSx SINE Alu -85 227 2 2143 123 3 3 chr3 20737616 20737916 -206786662 - AluSg SINE Alu -10 300 1 234 0 0 0 chr3 20739039 20739065 -206785513 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 1339 207 17 47 chr3 20739223 20739523 -206785055 + AluJo SINE Alu 1 291 -21 2278 93 17 10 chr3 20739788 20740090 -206784488 - AluSp SINE Alu -9 304 1 1781 250 60 19 chr3 20740224 20740744 -206783834 - MER74B LTR ERVL -27 595 55 700 50 0 59 chr3 20740837 20740938 -206783640 - AluSg/x SINE Alu 0 310 216 229 209 0 0 chr3 20740938 20740981 -206783597 + Alu SINE Alu 253 295 -7 3450 178 88 39 chr3 20740991 20741026 -206783552 + L1MB2 LINE L1 5281 5313 -858 2176 109 13 10 chr3 20741026 20741338 -206783240 + AluSq SINE Alu 1 313 0 3450 178 88 39 chr3 20741338 20741963 -206782615 + L1MB2 LINE L1 5313 5906 -265 1250 174 55 0 chr3 20741963 20742181 -206782397 - MER30 DNA MER1_type 0 230 1 3450 178 88 39 chr3 20742181 20742268 -206782310 + L1MB2 LINE L1 5906 5987 -184 1329 166 113 32 chr3 20742268 20742552 -206782026 + AluJb SINE Alu 1 307 -5 3450 178 88 39 chr3 20742552 20742649 -206781929 + L1MB2 LINE L1 5987 6169 -2 707 252 87 14 chr3 20742644 20742862 -206781716 + L1MB7 LINE L1 5814 6047 -137 * 12463 149 52 18 chr3 20743006 20743117 -206781461 - Tigger1 DNA MER2_type 0 2418 2312 2035 126 44 0 chr3 20743117 20743410 -206781168 + AluSx SINE Alu 1 306 -6 1555 186 31 21 chr3 20743420 20743711 -206780867 + AluJo SINE Alu 1 294 -18 12463 149 52 18 chr3 20743711 20743798 -206780780 - Tigger1 DNA MER2_type -114 2304 2221 2178 114 3 3 chr3 20743798 20744097 -206780481 + AluSq SINE Alu 1 299 -14 12463 149 52 18 chr3 20744097 20746039 -206778539 - Tigger1 DNA MER2_type -197 2221 182 2269 98 7 0 chr3 20746039 20746345 -206778233 + AluSg SINE Alu 1 308 -2 12463 149 52 18 chr3 20746345 20746477 -206778101 - Tigger1 DNA MER2_type -2236 182 56 662 177 57 38 chr3 20746510 20746668 -206777910 + AluJo SINE Alu 4 164 -148 802 98 114 8 chr3 20746685 20746808 -206777770 + AluSg SINE Alu 1 136 -174 2139 69 83 4 chr3 20746816 20747093 -206777485 + AluY SINE Alu 1 299 -12 258 244 44 44 chr3 20747112 20747202 -206777376 - L1MC4 LINE L1 -1339 6703 6614 228 231 22 44 chr3 20747133 20747224 -206777354 + L1MC4 LINE L1 6615 6703 -1339 * 2195 89 18 0 chr3 20747986 20748267 -206776311 - AluSc SINE Alu -23 286 1 594 150 9 53 chr3 20748582 20748695 -206775883 + AluJb SINE Alu 2 109 -203 1610 159 64 0 chr3 20748700 20748983 -206775595 + AluSx SINE Alu 1 301 -11 612 157 0 82 chr3 20748985 20749119 -206775459 + FRAM SINE Alu 1 40 0 2386 57 0 7 chr3 20749617 20749899 -206774679 + AluY SINE Alu 12 291 -20 193 29 59 0 chr3 20749902 20749936 -206774642 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 1810 175 3 22 chr3 20750323 20750638 -206773940 + AluJo SINE Alu 1 309 -3 2282 113 0 0 chr3 20750865 20751167 -206773411 - AluY SINE Alu -9 302 1 1126 117 0 0 chr3 20751167 20751312 -206773266 - AluSq/x SINE Alu -167 145 1 2165 84 0 30 chr3 20751858 20752201 -206772377 - AluY SINE Alu 0 334 1 2361 89 3 0 chr3 20752642 20752935 -206771643 + AluSg SINE Alu 1 294 -16 207 259 82 24 chr3 20753472 20753557 -206771021 + MIR SINE MIR 169 258 -4 1440 192 0 42 chr3 20753565 20753872 -206770706 - AluJo SINE Alu -18 294 1 213 224 20 20 chr3 20753915 20753964 -206770614 - MIR SINE MIR -213 49 1 1803 127 35 32 chr3 20754130 20754414 -206770164 - AluSx SINE Alu -27 285 1 2291 112 0 10 chr3 20754420 20754733 -206769845 - AluSg SINE Alu 0 310 1 1113 98 7 0 chr3 20754733 20754876 -206769702 - AluSg SINE Alu -166 144 1 436 62 0 0 chr3 20755049 20755114 -206769464 + Alu SINE Alu 241 305 -5 917 200 101 82 chr3 20755129 20755703 -206768875 + L1MC5 LINE L1 7153 7737 -224 854 189 51 46 chr3 20755706 20755902 -206768676 + Tigger2a DNA MER2_type 4 200 -234 789 179 0 0 chr3 20756002 20756119 -206768459 - FLAM_C SINE Alu -15 118 2 356 54 0 54 chr3 20756469 20756525 -206768053 + Alu SINE Alu 248 300 0 1762 176 14 0 chr3 20756832 20757121 -206767457 - AluJb SINE Alu -19 293 1 2265 107 3 0 chr3 20757770 20758069 -206766509 + AluSx SINE Alu 1 300 -12 1575 92 0 14 chr3 20758418 20758625 -206765953 - AluSq SINE Alu -52 261 58 23 0 0 0 chr3 20758706 20758729 -206765849 + AT_rich Low_complexity Low_complexity 1 23 0 2012 114 47 7 chr3 20759223 20759520 -206765058 + AluSq SINE Alu 1 309 -4 1613 174 8 4 chr3 20759668 20759933 -206764645 + AluSx SINE Alu 1 266 -46 1603 191 14 7 chr3 20760404 20760692 -206763886 + AluJb SINE Alu 1 290 -22 619 211 0 0 chr3 20760737 20760841 -206763737 + FLAM_A SINE Alu 9 112 -30 1443 114 5 5 chr3 20760964 20761166 -206763412 - AluSp SINE Alu -9 304 103 290 392 0 0 chr3 20761332 20761490 -206763088 + G-rich Low_complexity Low_complexity 1 158 0 348 411 0 0 chr3 20761517 20761685 -206762893 + G-rich Low_complexity Low_complexity 1 168 0 24 0 0 0 chr3 20761716 20761740 -206762838 + GC_rich Low_complexity Low_complexity 1 24 0 619 198 0 0 chr3 20761887 20761998 -206762580 - AluJb SINE Alu -200 112 2 650 119 0 10 chr3 20762008 20762109 -206762469 + FLAM_C SINE Alu 32 131 -12 561 175 0 61 chr3 20762210 20762324 -206762254 - AluJb SINE Alu -205 107 1 25 31 0 0 chr3 20762327 20762359 -206762219 + AT_rich Low_complexity Low_complexity 1 32 0 1742 159 17 10 chr3 20762416 20762706 -206761872 - AluJo SINE Alu -20 292 1 1270 221 14 18 chr3 20762742 20763023 -206761555 - AluJo SINE Alu -32 280 1 201 155 17 35 chr3 20763101 20763159 -206761419 + (TAAA)n Simple_repeat Simple_repeat 2 58 0 2347 97 3 0 chr3 20763657 20763966 -206760612 + AluSp SINE Alu 1 310 -3 2364 91 0 0 chr3 20764423 20764720 -206759858 - AluSx SINE Alu -15 297 1 300 105 0 0 chr3 20764768 20764806 -206759772 + MER4E LTR ERV1 667 704 -75 1618 163 10 49 chr3 20764971 20765278 -206759300 + AluJb SINE Alu 1 295 -17 1906 86 16 12 chr3 20765590 20765846 -206758732 + AluY SINE Alu 1 257 -54 1342 153 17 34 chr3 20765906 20766142 -206758436 - AluJb SINE Alu -80 232 1 244 343 34 14 chr3 20766152 20766298 -206758280 + L2 LINE L2 2934 3082 -190 2328 78 10 14 chr3 20766559 20766855 -206757723 + AluY SINE Alu 1 295 -16 631 161 0 92 chr3 20766861 20766954 -206757624 + AluJo/FLAM SINE Alu 1 80 -222 1971 147 0 7 chr3 20766954 20767247 -206757331 + AluSx SINE Alu 1 291 -21 631 161 0 92 chr3 20767247 20767283 -206757295 + AluJo/FLAM SINE Alu 80 118 -184 23 0 0 0 chr3 20767285 20767308 -206757270 + AT_rich Low_complexity Low_complexity 1 23 0 2263 93 6 13 chr3 20767511 20767824 -206756754 - AluY SINE Alu 0 311 1 1873 141 28 14 chr3 20768081 20768364 -206756214 + AluSx SINE Alu 1 290 -22 300 91 0 0 chr3 20768364 20768408 -206756170 + (CATAA)n Simple_repeat Simple_repeat 2 45 0 1921 122 50 4 chr3 20768415 20768693 -206755885 + AluSx SINE Alu 1 291 -21 1239 226 7 17 chr3 20768728 20769025 -206755553 + AluJo SINE Alu 6 299 -13 1780 135 4 8 chr3 20769741 20770008 -206754570 - AluSq SINE Alu -11 302 37 2146 113 3 13 chr3 20770246 20770547 -206754031 - AluSg SINE Alu -12 298 1 25 0 0 0 chr3 20770619 20770644 -206753934 + AT_rich Low_complexity Low_complexity 1 25 0 341 119 0 49 chr3 20770898 20771021 -206753557 + AluYa5 SINE Alu 92 287 -14 2042 101 30 0 chr3 20771056 20771324 -206753254 - AluY SINE Alu -35 276 1 1329 212 14 14 chr3 20771428 20771721 -206752857 - AluJb SINE Alu -19 293 1 1933 94 16 0 chr3 20771781 20772037 -206752541 - AluY SINE Alu -15 296 37 478 111 12 37 chr3 20772137 20772218 -206752360 + AluSp/q SINE Alu 201 279 -34 288 0 0 0 chr3 20772218 20772250 -206752328 + (CA)n Simple_repeat Simple_repeat 2 33 0 1659 158 57 0 chr3 20772252 20772531 -206752047 + AluSq SINE Alu 1 295 -18 1102 161 0 60 chr3 20772569 20772622 -206751956 - AluJb SINE Alu -125 187 132 2280 85 7 3 chr3 20772622 20772917 -206751661 - AluY SINE Alu -15 296 1 1102 161 0 60 chr3 20772917 20773062 -206751516 - AluJb SINE Alu -180 132 1 446 221 33 72 chr3 20773132 20773257 -206751321 - L1M4 LINE L1 -2537 3609 3492 2193 125 3 0 chr3 20773257 20773554 -206751024 - AluSx SINE Alu -14 298 1 446 221 33 72 chr3 20773554 20773609 -206750969 - L1M4 LINE L1 -2654 3492 3436 279 320 17 33 chr3 20773865 20774046 -206750532 + T-rich Low_complexity Low_complexity 3 180 0 1862 113 0 77 chr3 20774521 20774848 -206749730 + AluSg SINE Alu 1 302 -8 234 61 0 0 chr3 20774855 20774888 -206749690 + L1MA3 LINE L1 6273 6305 0 2284 113 0 0 chr3 20774898 20775198 -206749380 + AluSx SINE Alu 1 300 -12 1755 157 11 7 chr3 20775352 20775638 -206748940 + AluSx SINE Alu 1 287 -25 258 164 0 0 chr3 20775755 20775810 -206748768 + (TA)n Simple_repeat Simple_repeat 1 55 0 2219 115 3 0 chr3 20775810 20776106 -206748472 - AluSp SINE Alu -16 297 1 2245 80 7 3 chr3 20776117 20776403 -206748175 - AluSx SINE Alu -13 299 13 2100 76 8 0 chr3 20776533 20776795 -206747783 + AluSq SINE Alu 1 264 -49 1281 155 30 35 chr3 20776849 20777081 -206747497 - AluJb SINE Alu -80 232 2 346 203 145 100 chr3 20777609 20777850 -206746728 + L1MC4 LINE L1 7779 8030 -12 2129 110 0 3 chr3 20777873 20778165 -206746413 + AluSx SINE Alu 1 291 -21 205 348 19 13 chr3 20778301 20778459 -206746119 + G-rich Low_complexity Low_complexity 4 162 0 628 163 0 0 chr3 20779031 20779129 -206745449 + AluJb SINE Alu 206 303 -9 252 241 231 9 chr3 20779232 20779340 -206745238 + MIR3 SINE MIR 35 166 -42 458 259 133 30 chr3 20779340 20779698 -206744880 - MLT1J2 LTR MaLR 0 450 34 2336 95 0 3 chr3 20779745 20780049 -206744529 - AluSc SINE Alu -6 303 1 322 241 101 70 chr3 20781147 20781170 -206743408 - HAL1 LINE L1 -821 1686 1665 2136 94 0 30 chr3 20781170 20781469 -206743109 - AluSc SINE Alu -19 290 1 322 241 101 70 chr3 20781469 20781644 -206742934 - HAL1 LINE L1 -842 1665 1482 317 217 0 0 chr3 20781686 20781746 -206742832 - FLAM_A SINE Alu -27 106 47 598 259 114 8 chr3 20781864 20782070 -206742508 - L1M4 LINE L1 -1121 5025 4797 198 0 0 0 chr3 20782071 20782093 -206742485 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 237 230 81 14 chr3 20782182 20782256 -206742322 - MER116 DNA Mariner 0 80 2 517 219 37 88 chr3 20782258 20782432 -206742146 - L1M4 LINE L1 -1402 4744 4581 2383 97 0 7 chr3 20782432 20782740 -206741838 + AluSg SINE Alu 1 306 -4 517 219 37 88 chr3 20782740 20782780 -206741798 - L1M4 LINE L1 -1565 4581 4541 494 232 0 0 chr3 20782805 20782900 -206741678 + LTR16A1 LTR ERVL 363 457 0 975 189 6 0 chr3 20783119 20783288 -206741290 + FAM SINE Alu 5 174 -1 1088 92 0 0 chr3 20783896 20784026 -206740552 + AluSq/x SINE Alu 5 134 -179 1515 190 40 13 chr3 20784175 20784475 -206740103 - AluJo SINE Alu -4 308 1 33 25 0 0 chr3 20784636 20784676 -206739902 + AT_rich Low_complexity Low_complexity 1 40 0 1684 168 11 25 chr3 20784736 20785022 -206739556 - AluJo SINE Alu -30 282 1 2299 94 3 26 chr3 20785252 20785561 -206739017 - AluSc SINE Alu -7 302 1 2040 121 6 85 chr3 20785870 20786234 -206738344 + MER1B DNA MER1_type 3 337 0 210 71 0 0 chr3 20786578 20786606 -206737972 + (A)n Simple_repeat Simple_repeat 1 28 0 2174 123 0 13 chr3 20786999 20787301 -206737277 + AluSx SINE Alu 1 298 -14 1367 154 0 5 chr3 20789410 20789618 -206734960 - AluJb SINE Alu -19 293 87 24 0 0 0 chr3 20790354 20790378 -206734200 + AT_rich Low_complexity Low_complexity 1 24 0 281 255 128 0 chr3 20790525 20790619 -206733959 - MIR3 SINE MIR -36 172 67 1642 181 81 16 chr3 20791683 20792174 -206732404 - LTR27 LTR ERV1 0 501 3 1850 109 0 86 chr3 20792510 20792814 -206731764 - AluSx SINE Alu -14 298 21 2966 83 57 5 chr3 20793038 20793460 -206731118 - MLT2A1 LTR ERVL 0 444 1 43888 71 17 8 chr3 20793460 20794678 -206729900 - HERVL-A1-A1 LTR ERVL 0 5654 4449 2321 88 0 14 chr3 20794678 20794998 -206729580 + AluSx SINE Alu 1 312 0 43888 71 17 8 chr3 20794998 20796132 -206728446 - HERVL-A1-A1 LTR ERVL -1205 4449 3327 2202 82 7 0 chr3 20796132 20796401 -206728177 + AluSc SINE Alu 23 293 -16 43888 71 17 8 chr3 20796401 20798705 -206725873 - HERVL-A1-A1 LTR ERVL -2327 3327 931 2346 88 0 3 chr3 20798705 20799001 -206725577 - AluSg SINE Alu -15 295 1 43888 71 17 8 chr3 20799001 20799942 -206724636 - HERVL-A1-A1 LTR ERVL -4723 931 1 2983 103 23 21 chr3 20799956 20800392 -206724186 - MLT2A1 LTR ERVL -7 437 1 2298 107 0 0 chr3 20800607 20800905 -206723673 - AluY SINE Alu -13 298 1 396 0 0 0 chr3 20801083 20801127 -206723451 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 27 49 0 0 chr3 20801156 20801197 -206723381 + AT_rich Low_complexity Low_complexity 1 41 0 1885 161 14 0 chr3 20801197 20801483 -206723095 - AluSx SINE Alu -18 294 5 1632 183 3 43 chr3 20801485 20801808 -206722770 - AluJo SINE Alu -2 310 1 615 182 30 172 chr3 20801829 20802032 -206722546 - FAM SINE Alu 0 175 2 743 132 0 0 chr3 20802101 20802215 -206722363 + AluSp/q SINE Alu 192 305 -8 1718 119 0 4 chr3 20802286 20802522 -206722056 + AluSx SINE Alu 1 235 -77 21 36 0 0 chr3 20802730 20802758 -206721820 + AT_rich Low_complexity Low_complexity 1 28 0 252 0 0 0 chr3 20803839 20803867 -206720711 + (T)n Simple_repeat Simple_repeat 1 28 0 2149 99 0 45 chr3 20804120 20804433 -206720145 + AluSg SINE Alu 1 299 -11 2234 113 0 7 chr3 20804685 20804994 -206719584 + AluSc SINE Alu 1 307 -2 1625 165 47 26 chr3 20805194 20805619 -206718959 - MER34B LTR ERV1 0 565 35 1924 143 36 0 chr3 20805776 20806056 -206718522 - AluJb SINE Alu -22 290 1 1858 175 3 7 chr3 20806083 20806386 -206718192 + AluJo SINE Alu 4 305 -7 1268 175 0 5 chr3 20806391 20806602 -206717976 + AluSx SINE Alu 3 212 -100 483 51 0 0 chr3 20806602 20806661 -206717917 + AluSg/x SINE Alu 76 134 -176 2186 112 7 0 chr3 20806661 20806947 -206717631 + AluSq SINE Alu 1 288 -25 27 29 0 0 chr3 20806947 20806981 -206717597 + AT_rich Low_complexity Low_complexity 1 34 0 234 0 0 0 chr3 20806989 20807015 -206717563 + (CAA)n Simple_repeat Simple_repeat 2 27 0 180 200 0 0 chr3 20807074 20807104 -206717474 - MIR SINE MIR -63 145 116 2188 117 0 7 chr3 20807324 20807622 -206716956 + AluSg SINE Alu 1 296 -14 2484 48 3 7 chr3 20807703 20807994 -206716584 + AluY SINE Alu 2 291 -20 714 213 7 33 chr3 20808785 20808935 -206715643 - AluJo SINE Alu -165 147 2 2206 219 75 67 chr3 20809068 20809189 -206715389 + L1MC4 LINE L1 7218 7336 -706 1650 157 0 75 chr3 20809189 20809340 -206715238 + AluJb SINE Alu 1 162 -150 2073 108 47 7 chr3 20809340 20809636 -206714942 + AluSx SINE Alu 1 308 -4 2258 93 14 0 chr3 20809639 20809928 -206714650 + AluSx SINE Alu 1 293 -19 1650 157 0 75 chr3 20809928 20810090 -206714488 + AluJb SINE Alu 164 294 -18 2206 219 75 67 chr3 20810090 20810749 -206713829 + L1MC4 LINE L1 7336 8005 -37 465 204 65 46 chr3 20810807 20810915 -206713663 - FLAM_A SINE Alu -32 110 1 2266 93 6 34 chr3 20810963 20811284 -206713294 - AluSq SINE Alu -1 312 1 2309 97 50 6 chr3 20811360 20811701 -206712877 - L1PA14 LINE L1 0 6161 5806 225 253 27 27 chr3 20812133 20812208 -206712370 + MIR SINE MIR 75 149 -59 2476 210 105 26 chr3 20812999 20813476 -206711102 - L1M4 LINE L1 -2369 3777 3339 279 0 0 0 chr3 20813476 20813507 -206711071 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2476 210 105 26 chr3 20813507 20813847 -206710731 - L1M4 LINE L1 -2807 3339 2895 1073 249 129 18 chr3 20813837 20814442 -206710136 - L1MCc LINE L1 -4889 1534 1245 * 279 0 0 0 chr3 20814442 20814473 -206710105 + (TG)n Simple_repeat Simple_repeat 2 32 0 1073 249 129 18 chr3 20814473 20814776 -206709802 - L1MCc LINE L1 -5178 1245 977 1038 297 88 22 chr3 20815056 20815547 -206709031 - L1MCc LINE L1 -5882 541 19 2278 122 0 0 chr3 20815660 20815972 -206708606 + AluSx SINE Alu 1 312 0 537 154 29 0 chr3 20815972 20816076 -206708502 + HSMAR2 DNA Mariner 1180 1286 -16 2202 98 3 0 chr3 20816244 20816530 -206708048 - AluSg SINE Alu -13 297 11 26 0 0 0 chr3 20816557 20816583 -206707995 + AT_rich Low_complexity Low_complexity 1 26 0 250 164 12 0 chr3 20817003 20817054 -206707524 - Alu SINE Alu -265 37 2 * 4835 105 42 29 chr3 20817054 20817853 -206706725 - HSMAR2 DNA Mariner -197 1105 339 1068 203 11 0 chr3 20817853 20818030 -206706548 - FAM SINE Alu -6 43 1 2201 113 0 38 chr3 20818035 20818288 -206706290 - HSMAR2 DNA Mariner -966 336 98 1575 126 0 0 chr3 20818288 20818503 -206706075 - AluSg/x SINE Alu -13 297 83 2201 113 0 38 chr3 20818503 20818595 -206705983 - HSMAR2 DNA Mariner -1204 98 4 956 154 0 13 chr3 20818615 20818771 -206705807 + AluJb SINE Alu 135 288 -24 21 36 0 0 chr3 20818771 20818799 -206705779 + AT_rich Low_complexity Low_complexity 1 28 0 971 215 36 75 chr3 20819212 20819240 -206705338 - AluJo SINE Alu -7 295 267 2413 66 0 23 chr3 20819240 20819545 -206705033 + AluSq SINE Alu 3 300 -13 971 215 36 75 chr3 20819545 20819823 -206704755 - AluJo SINE Alu -35 267 1 784 174 0 47 chr3 20820739 20820888 -206703690 - AluJo SINE Alu -169 143 2 225 217 33 17 chr3 20820894 20820954 -206703624 + MER5A DNA MER1_type 123 183 -6 805 142 0 17 chr3 20821953 20822073 -206702505 - FLAM_C SINE Alu -16 127 10 2125 116 13 7 chr3 20822100 20822401 -206702177 + AluSg SINE Alu 1 303 -7 826 265 233 12 chr3 20822620 20822985 -206701593 + L2 LINE L2 1296 1579 -1735 2595 64 0 0 chr3 20822985 20823296 -206701282 - AluY SINE Alu 0 311 1 826 265 233 12 chr3 20823296 20823440 -206701138 + L2 LINE L2 1579 1918 -1396 761 254 31 5 chr3 20823441 20823665 -206700913 - L2 LINE L2 -841 2473 2244 2174 80 0 14 chr3 20824568 20824887 -206699691 + AluY SINE Alu 1 315 0 29 47 0 0 chr3 20825277 20825320 -206699258 + AT_rich Low_complexity Low_complexity 1 43 0 1759 128 56 69 chr3 20825380 20825521 -206699057 + AluSx SINE Alu 1 142 -170 2191 67 4 4 chr3 20825521 20825790 -206698788 + AluSq SINE Alu 6 274 -39 1759 128 56 69 chr3 20825790 20825952 -206698626 + AluSx SINE Alu 142 300 -12 2271 107 7 0 chr3 20826186 20826494 -206698084 - AluSx SINE Alu -2 310 1 416 291 81 0 chr3 20827940 20828112 -206696466 + L2 LINE L2 1261 1446 -1868 314 224 71 12 chr3 20828249 20828334 -206696244 - L1MB7 LINE L1 -318 5866 5777 591 152 0 0 chr3 20828334 20828433 -206696145 - AluJb SINE Alu -6 306 208 1297 238 108 28 chr3 20828564 20828737 -206695841 + MLT1F LTR MaLR 1 159 -383 2407 65 0 7 chr3 20828737 20829030 -206695548 + AluSc SINE Alu 1 291 -18 1297 238 108 28 chr3 20829030 20829243 -206695335 + MLT1F LTR MaLR 159 418 -124 468 205 334 25 chr3 20829243 20829560 -206695018 - L2 LINE L2 -746 2568 2154 1064 193 0 5 chr3 20830001 20830193 -206694385 - AluJb SINE Alu -3 309 119 857 133 51 32 chr3 20830240 20830398 -206694180 - FAM SINE Alu -14 171 11 251 260 0 0 chr3 20830622 20830672 -206693906 + MER5A DNA MER1_type 35 84 -105 2231 90 7 10 chr3 20830778 20831077 -206693501 - AluSc SINE Alu -11 298 1 2225 114 0 3 chr3 20831596 20831895 -206692683 + AluSq SINE Alu 1 298 -15 465 192 0 13 chr3 20831896 20831974 -206692604 - AluJ/FLAM SINE Alu -234 78 2 813 71 27 0 chr3 20831974 20832086 -206692492 - Charlie1 DNA MER1_type -482 2279 2165 2142 118 20 16 chr3 20832637 20832941 -206691637 + AluSx SINE Alu 1 305 -7 261 350 0 12 chr3 20834011 20834091 -206690487 - MIR SINE MIR -83 125 47 1272 185 31 39 chr3 20834094 20834380 -206690198 + AluJo SINE Alu 1 284 -28 2198 101 17 3 chr3 20834392 20834689 -206689889 - AluSx SINE Alu -11 301 1 505 240 106 23 chr3 20834692 20834909 -206689669 - Charlie2 DNA MER1_type -552 2310 2076 2005 126 20 3 chr3 20834911 20835204 -206689374 - AluSx SINE Alu -14 298 1 26 0 0 0 chr3 20835210 20835236 -206689342 + AT_rich Low_complexity Low_complexity 1 26 0 736 194 104 0 chr3 20835244 20835276 -206689302 - AluJo SINE Alu -146 166 139 216 0 0 0 chr3 20835276 20835300 -206689278 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 736 194 104 0 chr3 20835300 20835401 -206689177 - AluJo SINE Alu -173 139 19 276 256 199 39 chr3 20835523 20835782 -206688796 - L1MC/D LINE L1 -406 5758 5450 1573 223 57 60 chr3 20836441 20836559 -206688019 + L1M4 LINE L1 4562 4679 -1484 1891 148 3 28 chr3 20836559 20836876 -206687702 + AluJo SINE Alu 1 309 -3 1573 223 57 60 chr3 20836876 20836931 -206687647 + L1M4 LINE L1 4679 4733 -1430 2101 106 0 17 chr3 20836931 20837223 -206687355 + AluSx SINE Alu 1 287 -25 1573 223 57 60 chr3 20837223 20837909 -206686669 + L1M4 LINE L1 4733 5419 -744 186 133 0 0 chr3 20837929 20837959 -206686619 + (A)n Simple_repeat Simple_repeat 1 30 0 2081 137 7 0 chr3 20838077 20838383 -206686195 + AluSq SINE Alu 2 309 -4 2501 71 0 0 chr3 20840602 20840899 -206683679 + AluSx SINE Alu 1 297 -15 2130 113 10 0 chr3 20842257 20842548 -206682030 - AluSx SINE Alu -18 294 1 208 250 0 0 chr3 20843396 20843436 -206681142 + polypyrimidine Low_complexity Low_complexity 2 41 0 2684 52 0 0 chr3 20843782 20844092 -206680486 - AluY SINE Alu -1 310 1 2300 95 0 22 chr3 20845852 20846167 -206678411 - AluSq SINE Alu -5 308 1 2316 92 3 25 chr3 20846175 20846491 -206678087 - AluSp SINE Alu -4 309 1 484 321 26 41 chr3 20846549 20846817 -206677761 - LTR16C LTR ERVL -33 458 195 769 65 0 0 chr3 20846821 20846913 -206677665 - AluY SINE Alu -16 295 204 2043 116 6 42 chr3 20847259 20847570 -206677008 - AluSq SINE Alu -13 300 1 3123 228 49 14 chr3 20847651 20848575 -206676003 - L1M4 LINE L1 -2701 3445 2490 1783 157 28 3 chr3 20848729 20849016 -206675562 - AluJo SINE Alu -18 294 1 2023 144 7 0 chr3 20849027 20849326 -206675252 - AluSq SINE Alu -12 301 1 2197 82 7 0 chr3 20849336 20849642 -206674936 - AluSx SINE Alu 0 308 1 3921 177 56 32 chr3 20849675 20850018 -206674560 + L1MB3 LINE L1 4598 4931 -1369 1323 186 39 36 chr3 20850018 20850150 -206674428 + AluJo SINE Alu 2 132 -180 2418 87 3 3 chr3 20850150 20850461 -206674117 + AluY SINE Alu 1 311 0 1323 186 39 36 chr3 20850461 20850608 -206673970 + AluJo SINE Alu 132 282 -30 3921 177 56 32 chr3 20850608 20851828 -206672750 + L1MB3 LINE L1 4931 6137 -163 1764 267 106 46 chr3 20852103 20853055 -206671523 + L2 LINE L2 2298 3311 -2 275 253 0 55 chr3 20853217 20853308 -206671270 + MIR SINE MIR 71 156 -106 601 172 25 14 chr3 20854069 20854214 -206670364 - LTR41 LTR ERVL -7 766 590 653 278 110 8 chr3 20854333 20854596 -206669982 - MER66A LTR ERV1 0 478 189 1929 74 0 23 chr3 20854766 20855022 -206669556 - AluY SINE Alu -61 250 1 1791 128 56 14 chr3 20855025 20855313 -206669265 - AluSx SINE Alu -12 300 1 2379 91 0 0 chr3 20855518 20855814 -206668764 + AluSc SINE Alu 4 299 -10 1166 118 0 0 chr3 20855814 20855975 -206668603 + AluSg/x SINE Alu 134 294 -18 2724 266 103 9 chr3 20856035 20856885 -206667693 - ERVL LTR ERVL -331 5433 4504 849 153 0 15 chr3 20856885 20857016 -206667562 + FLAM_C SINE Alu 1 129 -14 1997 133 3 10 chr3 20857027 20857321 -206667257 + AluSx SINE Alu 1 292 -20 4947 284 38 23 chr3 20857327 20859014 -206665564 - ERVL LTR ERVL -1248 4516 2738 417 39 0 0 chr3 20859014 20859065 -206665513 + (TG)n Simple_repeat Simple_repeat 1 51 0 4947 284 38 23 chr3 20859065 20859641 -206664937 - ERVL LTR ERVL -3026 2738 2172 2332 87 0 29 chr3 20859805 20860117 -206664461 + AluY SINE Alu 1 303 -8 1329 130 39 10 chr3 20860117 20860324 -206664254 + AluJb SINE Alu 85 297 -15 25 0 0 0 chr3 20860324 20860349 -206664229 + AT_rich Low_complexity Low_complexity 1 25 0 322 293 81 24 chr3 20860500 20860623 -206663955 - L2 LINE L2 0 3272 3143 1834 98 4 0 chr3 20860740 20860976 -206663602 - AluSx SINE Alu -75 237 1 345 235 113 75 chr3 20860978 20861191 -206663387 - L1MC5 LINE L1 -138 7823 7603 2283 109 0 0 chr3 20861719 20862021 -206662557 - AluSg SINE Alu -8 302 1 1764 158 15 0 chr3 20862449 20862721 -206661857 - AluSx SINE Alu -36 276 1 1641 178 16 13 chr3 20862920 20863223 -206661355 - AluJo SINE Alu -8 304 1 305 238 131 25 chr3 20863223 20863345 -206661233 - L1MC4 LINE L1 -4 8038 7904 1018 167 0 44 chr3 20863493 20863673 -206660905 + FAM SINE Alu 4 175 0 1459 178 127 50 chr3 20864066 20864247 -206660331 - Charlie1 DNA MER1_type -50 2711 2545 2185 101 0 36 chr3 20864247 20864555 -206660023 - AluSg SINE Alu -13 297 1 1459 178 127 50 chr3 20864555 20864789 -206659789 - Charlie1 DNA MER1_type -216 2545 2264 330 253 67 86 chr3 20865023 20865171 -206659407 - MIR3 SINE MIR -17 191 39 2348 100 3 0 chr3 20865171 20865481 -206659097 - AluSq SINE Alu 0 313 3 330 253 67 86 chr3 20865481 20865500 -206659078 - MIR3 SINE MIR -169 39 21 2047 130 17 3 chr3 20865729 20866029 -206658549 - AluSq SINE Alu -9 304 1 228 207 9 135 chr3 20866052 20866163 -206658415 - MLT1K LTR MaLR -158 430 334 24 53 0 0 chr3 20866169 20866207 -206658371 + AT_rich Low_complexity Low_complexity 1 38 0 951 227 37 29 chr3 20866224 20866497 -206658081 - AluSq SINE Alu -13 300 26 1883 139 0 28 chr3 20866598 20866886 -206657692 - AluSx SINE Alu -32 280 1 1402 205 95 5 chr3 20867703 20868147 -206656431 + Charlie2 DNA MER1_type 2378 2861 -1 1965 147 0 23 chr3 20868382 20868689 -206655889 - AluSx SINE Alu -11 301 2 1446 176 28 38 chr3 20868705 20868859 -206655719 - AluJo SINE Alu -25 287 133 243 0 0 0 chr3 20868859 20868886 -206655692 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 2225 92 0 3 chr3 20868887 20869171 -206655407 - AluSx SINE Alu -27 285 3 1446 176 28 38 chr3 20869171 20869304 -206655274 - AluJo SINE Alu -178 134 1 735 144 0 24 chr3 20869312 20869437 -206655141 - L1MC3 LINE L1 -805 6980 6859 917 215 155 76 chr3 20869646 20869898 -206654680 - L1M4 LINE L1 -1135 5011 4780 1917 126 0 11 chr3 20869898 20870176 -206654402 - AluSx SINE Alu -37 275 1 917 215 155 76 chr3 20870176 20870421 -206654157 - L1M4 LINE L1 -1366 4780 4475 1057 174 31 0 chr3 20870574 20870735 -206653843 - FAM SINE Alu -9 166 1 822 188 0 0 chr3 20871536 20871669 -206652909 + FLAM_C SINE Alu 1 133 0 2542 66 0 0 chr3 20871761 20872063 -206652515 - AluY SINE Alu -9 302 1 1118 117 0 0 chr3 20872063 20872208 -206652370 - AluSq/x SINE Alu -168 145 1 257 241 0 17 chr3 20872290 20872348 -206652230 - MARNA DNA Mariner -279 307 251 1829 119 101 0 chr3 20872766 20873034 -206651544 + AluSx SINE Alu 1 295 -17 564 228 104 89 chr3 20873354 20873534 -206651044 - L1MC4 LINE L1 -249 7793 7617 1483 213 0 20 chr3 20873534 20873691 -206650887 - AluJo SINE Alu -18 294 135 204 40 0 0 chr3 20873691 20873716 -206650862 + (TTTTC)n Simple_repeat Simple_repeat 2 26 0 2144 117 0 0 chr3 20873716 20873997 -206650581 - AluSx SINE Alu -31 281 1 1483 213 0 20 chr3 20873997 20874138 -206650440 - AluJo SINE Alu -175 137 1 564 228 104 89 chr3 20874138 20874166 -206650412 - L1MC4 LINE L1 -425 7617 7591 2011 133 3 7 chr3 20874166 20874467 -206650111 - AluSx SINE Alu -12 300 1 564 228 104 89 chr3 20874467 20874516 -206650062 - L1MC4 LINE L1 -451 7591 7531 1816 137 20 13 chr3 20874517 20874816 -206649762 - AluSx SINE Alu -11 301 1 2337 93 0 7 chr3 20874886 20875188 -206649390 - AluSq SINE Alu -6 307 8 2149 93 73 0 chr3 20875201 20875490 -206649088 - AluSx SINE Alu -2 310 1 315 180 0 16 chr3 20875492 20875553 -206649025 + MLT1L LTR MaLR 556 615 0 499 294 82 21 chr3 20875711 20875742 -206648836 - L1M4c LINE L1 -856 1887 1859 2124 111 9 19 chr3 20875742 20876057 -206648521 - AluSx SINE Alu 0 312 1 499 294 82 21 chr3 20876057 20876297 -206648281 - L1M4c LINE L1 -884 1859 1535 2080 110 31 0 chr3 20876297 20876589 -206647989 - AluSc SINE Alu -8 301 1 1472 153 4 4 chr3 20876594 20876823 -206647755 - AluJb SINE Alu -13 299 71 444 37 0 0 chr3 20876826 20876880 -206647698 + (TG)n Simple_repeat Simple_repeat 1 54 0 339 220 0 0 chr3 20876880 20876939 -206647639 - AluJ/FRAM SINE Alu -23 279 221 370 102 0 0 chr3 20877067 20877116 -206647462 + Alu SINE Alu 247 295 -7 1510 177 31 31 chr3 20877218 20877506 -206647072 + AluJb SINE Alu 1 288 -24 1547 192 0 55 chr3 20877608 20877920 -206646658 - AluJb SINE Alu -17 295 1 756 94 57 0 chr3 20877934 20878040 -206646538 - HY1 scRNA scRNA 0 112 1 4349 165 46 7 chr3 20878048 20878854 -206645724 - L1MB7 LINE L1 0 6184 5348 726 213 12 62 chr3 20878866 20879026 -206645552 - FAM SINE Alu -33 152 1 1300 116 11 11 chr3 20879030 20879219 -206645359 - AluJo SINE Alu -11 301 113 1004 220 15 100 chr3 20879220 20879561 -206645017 + L1ME1 LINE L1 5850 6161 -5 1082 169 0 0 chr3 20879562 20879728 -206644850 - AluJb SINE Alu -10 302 137 2259 97 0 7 chr3 20879728 20880028 -206644550 - AluY SINE Alu -13 298 1 24 0 0 0 chr3 20880331 20880355 -206644223 + AT_rich Low_complexity Low_complexity 1 24 0 1598 186 25 0 chr3 20880443 20880722 -206643856 - AluJb SINE Alu -26 286 1 201 241 37 19 chr3 20880852 20880906 -206643672 - L3 LINE CR1 -5 1572 1518 352 279 96 0 chr3 20880939 20881043 -206643535 - L2 LINE L2 -4 3309 3196 2305 70 3 10 chr3 20881781 20882082 -206642496 + AluSp SINE Alu 1 299 -14 261 261 29 0 chr3 20882100 20882169 -206642409 + L2 LINE L2 1715 1785 -1529 2065 115 3 3 chr3 20882631 20882927 -206641651 - AluSx SINE Alu -14 298 3 802 170 0 14 chr3 20883987 20884128 -206640450 + FLAM_C SINE Alu 2 140 -3 569 171 195 30 chr3 20884319 20884483 -206640095 + LTR41 LTR ERVL 1 191 -582 2136 101 3 7 chr3 20884685 20884992 -206639586 + AluSg SINE Alu 1 306 -4 207 189 0 0 chr3 20885139 20885192 -206639386 + T-rich Low_complexity Low_complexity 1 53 0 759 113 0 0 chr3 20885192 20885298 -206639280 - AluSq/x SINE Alu -205 107 2 2160 78 24 0 chr3 20885306 20885599 -206638979 - AluSg SINE Alu -8 302 3 892 84 0 0 chr3 20885608 20885727 -206638851 - AluY SINE Alu -7 304 186 1629 75 121 0 chr3 20885727 20885966 -206638612 - AluSx SINE Alu -44 268 1 310 180 0 16 chr3 20885968 20886029 -206638549 + MLT1L LTR MaLR 556 615 0 479 293 72 12 chr3 20886187 20886218 -206638360 - L1M4c LINE L1 -856 1887 1859 2019 111 9 19 chr3 20886218 20886533 -206638045 - AluSx SINE Alu 0 312 1 479 293 72 12 chr3 20886533 20886773 -206637805 - L1M4c LINE L1 -884 1859 1535 1978 110 31 0 chr3 20886773 20887065 -206637513 - AluSc SINE Alu -8 301 1 1392 153 4 4 chr3 20887070 20887299 -206637279 - AluJb SINE Alu -13 299 71 444 37 0 0 chr3 20887302 20887356 -206637222 + (TG)n Simple_repeat Simple_repeat 1 54 0 1530 186 0 11 chr3 20887356 20887636 -206636942 - AluJb SINE Alu -33 279 3 2376 70 0 0 chr3 20887704 20888003 -206636575 + AluY SINE Alu 1 299 -12 311 82 0 0 chr3 20888140 20888189 -206636389 + Alu SINE Alu 254 302 0 2235 89 0 0 chr3 20888290 20888592 -206635986 - AluY SINE Alu -9 302 1 267 273 128 23 chr3 20888592 20888764 -206635814 + L1MC5 LINE L1 7721 7910 -51 2243 103 3 0 chr3 20888781 20889091 -206635487 - AluSp SINE Alu -2 311 1 330 45 0 0 chr3 20889714 20889758 -206634820 + (TG)n Simple_repeat Simple_repeat 1 44 0 850 200 138 22 chr3 20889819 20890044 -206634534 - AluJb SINE Alu -22 290 40 1341 132 26 122 chr3 20890087 20890224 -206634354 + AluYb8 SINE Alu 1 93 -225 2258 72 0 3 chr3 20890224 20890514 -206634064 + AluY SINE Alu 3 291 -20 1341 132 26 122 chr3 20890514 20890687 -206633891 + AluYb8 SINE Alu 93 281 -37 248 74 23 35 chr3 20890687 20890729 -206633849 - Alu SINE Alu -186 116 85 220 288 18 54 chr3 20891851 20891888 -206632690 + GA-rich Low_complexity Low_complexity 1 38 -697 2053 108 3 0 chr3 20891888 20892214 -206632364 + AluSg SINE Alu 3 329 0 220 288 18 54 chr3 20892214 20892303 -206632275 + GA-rich Low_complexity Low_complexity 38 129 -606 2077 118 0 0 chr3 20892303 20892590 -206631988 + AluSg SINE Alu 1 287 -23 220 288 18 54 chr3 20892590 20892614 -206631964 + GA-rich Low_complexity Low_complexity 129 735 0 347 200 53 63 chr3 20897191 20897286 -206627292 - L2 LINE L2 -2 3270 3177 2261 98 0 0 chr3 20898003 20898310 -206626268 - AluY SINE Alu -2 309 3 221 304 120 0 chr3 20898836 20898928 -206625650 + MIR3 SINE MIR 96 198 -10 231 322 145 7 chr3 20899447 20899599 -206624979 + MIR3 SINE MIR 36 208 0 354 291 51 8 chr3 20899895 20900012 -206624566 + MIR3 SINE MIR 33 154 -54 2205 90 0 3 chr3 20900020 20900321 -206624257 + AluSx SINE Alu 6 305 -7 335 140 0 0 chr3 20901310 20901360 -206623218 - MER66B LTR ERV1 -142 344 295 26 0 0 0 chr3 20901747 20901773 -206622805 + AT_rich Low_complexity Low_complexity 1 26 0 2314 81 7 0 chr3 20901946 20902254 -206622324 - AluYa5 SINE Alu -1 310 1 22 35 0 0 chr3 20902408 20902437 -206622141 + AT_rich Low_complexity Low_complexity 1 29 0 1807 117 81 0 chr3 20902727 20903000 -206621578 - AluSc SINE Alu -14 295 1 805 265 101 47 chr3 20904117 20904370 -206620208 + L1MC4a LINE L1 5177 4912 -1234 2008 127 7 0 chr3 20904370 20904661 -206619917 - AluSx SINE Alu -19 293 1 805 265 101 47 chr3 20904661 20905183 -206619395 + L1MC4a LINE L1 4911 5403 -743 679 213 131 123 chr3 20905254 20905440 -206619138 - L1MD2 LINE L1 -21 6338 6155 192 40 0 0 chr3 20905440 20905465 -206619113 + (TG)n Simple_repeat Simple_repeat 2 26 0 679 213 131 123 chr3 20905465 20905502 -206619076 - L1MD2 LINE L1 -204 6155 6120 260 77 0 51 chr3 20905502 20905541 -206619037 - Alu SINE Alu -249 59 23 679 213 131 123 chr3 20905541 20905691 -206618887 - L1MD2 LINE L1 -239 6120 5923 * 1114 213 89 25 chr3 20905672 20905931 -206618647 - L1MDb LINE L1 -2015 4525 4241 2002 81 30 50 chr3 20905931 20906229 -206618349 - AluY SINE Alu -19 292 1 1114 213 89 25 chr3 20906229 20906284 -206618294 - L1MDb LINE L1 -2299 4241 4191 1329 197 48 24 chr3 20906287 20906582 -206617996 - AluJo SINE Alu -6 306 5 1359 225 101 12 chr3 20906586 20907003 -206617575 - L1MDb LINE L1 -3369 3171 2718 1286 159 8 16 chr3 20907013 20907258 -206617320 + AluJo SINE Alu 23 265 -47 318 50 0 0 chr3 20907270 20907310 -206617268 + (TA)n Simple_repeat Simple_repeat 1 40 0 389 253 48 7 chr3 20907313 20907459 -206617119 - L1MDb LINE L1 -3945 2776 2625 1295 170 27 0 chr3 20907485 20907708 -206616870 - AluJo SINE Alu -83 229 1 3952 193 45 95 chr3 20907708 20907801 -206616777 - L1MDb LINE L1 -3923 2617 2521 2129 115 0 10 chr3 20907801 20908114 -206616464 + AluSq SINE Alu 1 310 -3 3952 193 45 95 chr3 20908114 20908419 -206616159 - L1MDb LINE L1 -4019 2521 2202 799 158 8 8 chr3 20908419 20908546 -206616032 - FLAM_A SINE Alu -6 127 1 3952 193 45 95 chr3 20908546 20908620 -206615958 - L1MDb LINE L1 -4338 2202 2126 1912 138 0 13 chr3 20908620 20908918 -206615660 - AluSx SINE Alu -18 294 1 3952 193 45 95 chr3 20908918 20909044 -206615534 - L1MDb LINE L1 -4414 2126 1995 2068 80 24 7 chr3 20909044 20909332 -206615246 - AluSp SINE Alu -20 293 1 3952 193 45 95 chr3 20909332 20910249 -206614329 - L1MDb LINE L1 -4545 1995 1175 620 288 116 5 chr3 20910253 20910451 -206614127 - L1MDb LINE L1 -5511 1032 813 765 236 36 68 chr3 20910966 20911059 -206613519 - L1MDb LINE L1 -6236 307 213 725 175 0 0 chr3 20911059 20911173 -206613405 + FLAM_C SINE Alu 5 118 -15 312 70 0 0 chr3 20911175 20911218 -206613360 + (CAAT)n Simple_repeat Simple_repeat 3 45 0 765 236 36 68 chr3 20911218 20911403 -206613175 - L1MDb LINE L1 -6331 212 34 2412 62 0 0 chr3 20911531 20911835 -206612743 - AluY SINE Alu -7 304 1 1602 193 0 7 chr3 20912105 20912410 -206612168 - AluJb SINE Alu -9 303 1 7360 138 111 94 chr3 20912831 20914498 -206610080 + pTR5 LTR ERV1 743 2438 0 210 218 100 82 chr3 20915481 20915591 -206608987 - L2 LINE L2 -12 3260 3149 248 100 0 40 chr3 20918474 20918524 -206606054 + (GAAA)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr3 20919568 20919590 -206604988 + AT_rich Low_complexity Low_complexity 1 22 0 2398 72 0 3 chr3 20920109 20920415 -206604163 + AluY SINE Alu 1 305 -6 1750 154 17 3 chr3 20920552 20920844 -206603734 + AluJb SINE Alu 1 296 -16 330 293 120 33 chr3 20921023 20921173 -206603405 + MIR3 SINE MIR 31 193 -15 2350 66 3 0 chr3 20922056 20922361 -206602217 + AluSp SINE Alu 1 306 -7 408 298 8 33 chr3 20922759 20922880 -206601698 - MIR SINE MIR -60 148 31 2030 116 3 0 chr3 20922942 20923234 -206601344 - AluSx SINE Alu -19 293 1 2022 99 0 45 chr3 20923465 20923778 -206600800 + AluSg SINE Alu 1 299 -11 2269 85 0 0 chr3 20924030 20924325 -206600253 + AluSc SINE Alu 1 295 -14 1411 175 23 52 chr3 20924473 20924781 -206599797 + AluJo SINE Alu 1 299 -13 1195 112 0 32 chr3 20925061 20925248 -206599330 - AluSq SINE Alu -132 181 1 1955 101 22 0 chr3 20926266 20926571 -206598007 + AluSx SINE Alu 1 311 0 1428 183 8 0 chr3 20927236 20927498 -206597080 + AluJb SINE Alu 35 298 -14 1795 160 21 0 chr3 20927686 20927973 -206596605 + AluJb SINE Alu 1 293 -19 2349 93 0 0 chr3 20928202 20928512 -206596066 + AluSg SINE Alu 1 310 0 2430 57 0 0 chr3 20929062 20929362 -206595216 + AluY SINE Alu 1 300 -11 191 326 0 0 chr3 20929706 20929755 -206594823 + MIR SINE MIR 37 85 -123 378 263 158 45 chr3 20929914 20930047 -206594531 + MIR SINE MIR 20 167 -95 1765 86 21 4 chr3 20930135 20930378 -206594200 - AluSx SINE Alu -21 291 45 1782 139 0 28 chr3 20930492 20930780 -206593798 - AluSx SINE Alu -32 280 1 180 0 0 0 chr3 20931674 20931694 -206592884 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 462 198 119 10 chr3 20931695 20931796 -206592782 - FLAM_A SINE Alu -30 112 1 512 155 0 0 chr3 20931947 20932031 -206592547 - AluJ/FRAM SINE Alu 0 312 229 2147 152 0 7 chr3 20931951 20932261 -206592317 - AluSx SINE Alu -4 308 1 779 140 0 29 chr3 20932271 20932407 -206592171 - FLAM_C SINE Alu 0 133 2 2681 170 62 58 chr3 20932421 20932566 -206592012 - L1MA9 LINE L1 -38 6274 6131 1821 169 0 41 chr3 20932566 20932886 -206591692 + AluJb SINE Alu 1 307 -5 2681 170 62 58 chr3 20932886 20932907 -206591671 - L1MA9 LINE L1 -181 6131 6112 2253 96 14 0 chr3 20932907 20933198 -206591380 + AluSq SINE Alu 5 299 -14 2681 170 62 58 chr3 20933198 20933424 -206591154 - L1MA9 LINE L1 -200 6112 5888 2159 139 0 0 chr3 20933424 20933727 -206590851 - AluSx SINE Alu -9 303 1 2681 170 62 58 chr3 20933727 20933787 -206590791 - L1MA9 LINE L1 -424 5888 5830 1948 152 34 0 chr3 20933787 20934083 -206590495 - AluJo SINE Alu -6 306 1 2681 170 62 58 chr3 20934083 20934316 -206590262 - L1MA9 LINE L1 -482 5830 5583 2333 108 0 16 chr3 20934316 20934494 -206590084 - AluSx SINE Alu -1 311 139 2274 98 20 0 chr3 20934494 20934791 -206589787 - AluSp SINE Alu -10 303 1 2333 108 0 16 chr3 20934791 20934928 -206589650 - AluSx SINE Alu -173 139 1 1077 98 0 0 chr3 20934932 20935065 -206589513 - AluSq/x SINE Alu -180 133 1 717 163 54 0 chr3 20935066 20935213 -206589365 - L1 LINE L1 -1899 4247 4093 821 238 28 0 chr3 20935213 20935394 -206589184 + MER20 DNA MER1_type 33 218 -1 1958 118 0 64 chr3 20935448 20935761 -206588817 - AluSx SINE Alu -19 293 1 2148 99 22 0 chr3 20935835 20936134 -206588444 - AluSg SINE Alu 0 305 1 307 143 16 0 chr3 20936136 20936199 -206588379 - L1MA9 LINE L1 -687 5493 5430 2175 106 0 0 chr3 20936824 20937106 -206587472 + AluSg SINE Alu 21 302 -8 361 296 37 12 chr3 20937588 20937750 -206586828 - L1M4 LINE L1 -1494 4652 4487 25 0 0 0 chr3 20937836 20937861 -206586717 + AT_rich Low_complexity Low_complexity 1 25 0 1024 158 0 0 chr3 20938190 20938364 -206586214 - AluJb SINE Alu 0 307 134 2470 75 3 35 chr3 20938599 20938917 -206585661 - AluSp SINE Alu -5 308 1 240 59 0 0 chr3 20938992 20939026 -206585552 + (TTTG)n Simple_repeat Simple_repeat 4 37 0 1922 119 22 0 chr3 20939026 20939295 -206585283 - AluSq SINE Alu -35 278 4 2600 70 0 3 chr3 20939308 20939620 -206584958 - AluY SINE Alu 0 311 1 1863 161 31 0 chr3 20939686 20939977 -206584601 + AluJb SINE Alu 1 300 -12 1956 193 35 88 chr3 20941392 20942042 -206582536 + LTR6A LTR ERV1 1 564 0 282 379 71 32 chr3 20942779 20943031 -206581547 + L3 LINE CR1 617 858 -719 1717 184 14 10 chr3 20943031 20943325 -206581253 - AluJo SINE Alu -17 295 1 282 379 71 32 chr3 20943325 20943539 -206581039 + L3 LINE CR1 858 1101 -476 199 375 25 0 chr3 20943958 20944038 -206580540 - L2 LINE L2 -222 3050 2969 2234 104 3 0 chr3 20944511 20944810 -206579768 - AluSx SINE Alu -12 300 1 22 0 0 0 chr3 20947550 20947572 -206577006 + GC_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr3 20947882 20947905 -206576673 + (GGCTG)n Simple_repeat Simple_repeat 4 26 0 1840 132 103 0 chr3 20955750 20956023 -206568555 - AluSx SINE Alu -11 301 1 191 206 59 59 chr3 20956442 20956510 -206568068 + L2 LINE L2 3192 3259 -13 2252 106 0 26 chr3 20957010 20957313 -206567265 - AluSx SINE Alu -17 295 1 2276 92 38 0 chr3 20957318 20957610 -206566968 - AluSp SINE Alu -10 303 1 449 34 17 0 chr3 20957884 20957943 -206566635 + (TG)n Simple_repeat Simple_repeat 2 61 0 994 145 0 0 chr3 20957986 20958124 -206566454 + AluSq/x SINE Alu 1 138 -175 2499 51 3 7 chr3 20958144 20958436 -206566142 + AluY SINE Alu 1 291 -20 1696 165 63 3 chr3 20959505 20959790 -206564788 - AluJb SINE Alu -10 302 1 255 307 98 37 chr3 20959857 20960235 -206564343 + L1MC5 LINE L1 7085 7485 -476 997 109 0 14 chr3 20960238 20960376 -206564202 + AluSq/x SINE Alu 1 136 -177 2080 112 18 0 chr3 20960376 20960652 -206563926 + AluSx SINE Alu 1 281 -31 2233 117 3 0 chr3 20960652 20960949 -206563629 - AluSg SINE Alu -11 299 1 326 273 111 6 chr3 20960949 20961121 -206563457 + L1MC5 LINE L1 7721 7910 -51 206 219 0 0 chr3 20961294 20961335 -206563243 + C-rich Low_complexity Low_complexity 5 45 0 619 215 30 32 chr3 20961511 20961633 -206562945 - L1ME LINE L1 -717 5449 5328 2283 93 7 10 chr3 20961633 20961933 -206562645 - AluY SINE Alu -12 299 1 619 215 30 32 chr3 20961933 20962076 -206562502 - L1ME LINE L1 -838 5328 5182 2776 16 0 7 chr3 20962079 20962416 -206562162 - AluYb8 SINE Alu 0 318 1 2364 93 0 13 chr3 20962420 20962733 -206561845 - AluSx SINE Alu -3 309 1 294 361 19 38 chr3 20962759 20962917 -206561661 + MIR3 SINE MIR 42 196 -12 * 424 284 168 7 chr3 20962902 20963057 -206561521 + MER5A DNA MER1_type 10 189 0 197 33 33 0 chr3 20964512 20964542 -206560036 + (TTTG)n Simple_repeat Simple_repeat 3 33 0 22 35 0 0 chr3 20969570 20969599 -206554979 + AT_rich Low_complexity Low_complexity 1 29 0 312 130 31 2 chr3 20969854 20969923 -206554655 + Alu SINE Alu 2 47 -253 235 367 48 14 chr3 20970359 20970506 -206554072 - MIR3 SINE MIR -23 185 34 376 267 105 35 chr3 20970607 20970699 -206553879 + Charlie8 DNA MER1_type 47 131 -2286 1796 162 28 7 chr3 20970699 20970989 -206553589 + AluJb SINE Alu 1 296 -16 376 267 105 35 chr3 20970989 20971068 -206553510 + Charlie8 DNA MER1_type 131 230 -2187 2071 142 0 0 chr3 20971146 20971428 -206553150 + AluSx SINE Alu 1 282 -30 2304 89 3 3 chr3 20971629 20971920 -206552658 + AluSg1 SINE Alu 1 291 -18 1858 153 3 10 chr3 20971996 20972284 -206552294 + AluJb SINE Alu 1 286 -26 2137 113 10 3 chr3 20972291 20972591 -206551987 + AluSx SINE Alu 1 302 -10 2035 109 32 3 chr3 20972853 20973137 -206551441 + AluSc SINE Alu 1 292 -17 237 115 94 0 chr3 20973137 20973233 -206551345 + (TA)n Simple_repeat Simple_repeat 1 105 0 698 206 0 22 chr3 20973242 20973378 -206551200 + FLAM_C SINE Alu 1 133 0 1218 161 10 87 chr3 20973439 20973650 -206550928 + L1MC3 LINE L1 6684 6867 -918 2222 127 0 0 chr3 20973650 20973957 -206550621 + AluSx SINE Alu 1 307 -5 1218 161 10 87 chr3 20973957 20974044 -206550534 + L1MC3 LINE L1 6867 6959 -826 6186 50 16 42 chr3 20975297 20976621 -206547957 + SVA Other Other 1 1123 -263 312 94 0 0 chr3 20976621 20976674 -206547904 + (TAAAAA)n Simple_repeat Simple_repeat 2 54 0 1812 137 0 4 chr3 20976677 20976933 -206547645 + AluSg SINE Alu 54 308 -2 357 188 232 29 chr3 20977048 20977186 -206547392 + L1ME1 LINE L1 5996 6161 -5 1651 178 42 0 chr3 20977233 20977520 -206547058 + AluJo SINE Alu 1 299 -13 551 280 15 114 chr3 20977526 20977717 -206546861 + ERVL LTR ERVL 1204 1364 -4400 2349 114 0 0 chr3 20977717 20978024 -206546554 + AluSx SINE Alu 5 311 -1 551 280 15 114 chr3 20978024 20978096 -206546482 + ERVL LTR ERVL 1364 1441 -4323 416 188 12 0 chr3 20978116 20978196 -206546382 - MER58B DNA MER1_type 0 341 261 277 236 0 0 chr3 20978258 20978313 -206546265 + ERVL LTR ERVL 1383 1437 -4048 1414 232 0 4 chr3 20978766 20979038 -206545540 + AluJo SINE Alu 10 280 -32 220 167 0 33 chr3 20979041 20979101 -206545477 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 2260 116 0 0 chr3 20979109 20979412 -206545166 + AluSx SINE Alu 1 303 -9 2466 93 0 3 chr3 20979437 20979747 -206544831 + AluSx SINE Alu 1 309 -3 272 295 72 65 chr3 20979758 20979897 -206544681 + L3 LINE CR1 967 1106 -471 612 227 159 12 chr3 20979902 20980065 -206544513 + LTR41 LTR ERVL 1 187 -586 1840 109 8 8 chr3 20980555 20980867 -206543711 + AluSc SINE Alu 26 337 0 894 122 157 35 chr3 21181673 21181845 -206342733 - PRIMA41-int LTR ERV1 -6201 1555 1363 * 1942 88 42 67 chr3 21181837 21182167 -206342411 - PRIMA41-int LTR ERV1 -6826 930 609 857 145 23 0 chr3 21182167 21182298 -206342280 + AluSq/x SINE Alu 2 135 -177 2087 147 0 3 chr3 21182299 21182612 -206341966 + AluSx SINE Alu 1 312 0 874 128 13 0 chr3 21182624 21182780 -206341798 + L1MCa LINE L1 1204 1361 -5065 15758 82 11 2 chr3 21182912 21185310 -206339268 - L1P4 LINE L1 -509 6381 3956 3858 168 40 4 chr3 21185458 21186198 -206338380 - L1P4 LINE L1 -4302 2561 1795 1991 117 37 27 chr3 21186198 21186496 -206338082 + AluSp SINE Alu 1 301 -12 2128 108 3 3 chr3 21186502 21186809 -206337769 + L1P3 LINE L1 5 311 -6150 1882 97 4 8 chr3 21186938 21187206 -206337372 - L1P LINE L1 -4328 1818 1552 6485 77 24 17 chr3 21187207 21188184 -206336394 - L1PA4 LINE L1 -2 6153 5175 7799 123 35 25 chr3 21188287 21189622 -206334956 - L1PBa LINE L1 -4121 2742 1395 1702 241 120 40 chr3 21189619 21190221 -206334357 - L1PBa LINE L1 -5806 1057 408 * 5832 105 46 5 chr3 21190352 21191260 -206333318 + L1MA2 LINE L1 5204 6148 -156 2215 117 7 0 chr3 21191260 21191560 -206333018 + AluSq SINE Alu 1 302 -11 2015 119 39 3 chr3 21191560 21191844 -206332734 + AluSx SINE Alu 1 295 -17 358 331 15 45 chr3 21191845 21192091 -206332487 - MIR3 SINE MIR -22 240 2 326 104 10 188 chr3 21192511 21192607 -206331971 + L1PB3 LINE L1 6074 6152 -2 332 318 53 8 chr3 21192636 21192768 -206331810 - MER91C DNA MER1_type 0 140 3 374 296 118 13 chr3 21192796 21192948 -206331630 + MIR3 SINE MIR 33 200 -8 500 351 25 4 chr3 21192954 21193196 -206331382 + L3 LINE CR1 1244 1490 -87 26 0 0 0 chr3 21194017 21194043 -206330535 + AT_rich Low_complexity Low_complexity 1 26 0 1618 191 36 28 chr3 21194393 21194781 -206329797 - pTR5 LTR ERV1 -1309 1129 739 1474 183 154 34 chr3 21194931 21195419 -206329159 + LTR61 LTR ERV1 16 595 0 623 182 4 37 chr3 21195484 21195628 -206328950 + L1M2 LINE L1 2804 2944 -3906 831 177 27 14 chr3 21195628 21195809 -206328769 - FRAM SINE Alu 0 180 1 604 200 164 0 chr3 21195809 21195974 -206328604 + L1M2 LINE L1 2938 3129 -3719 8115 192 50 15 chr3 21196117 21198382 -206326196 + L1PA12 LINE L1 1543 3897 -3687 687 111 0 10 chr3 21198382 21198481 -206326097 + MER4A LTR ERV1 1 98 -566 1908 109 8 77 chr3 21198481 21198854 -206325724 + MER4A LTR ERV1 261 664 0 2278 113 61 72 chr3 21198857 21199360 -206325218 + MER4A-int LTR ERV1 1 563 -6035 1370 234 76 12 chr3 21199555 21199897 -206324681 + LTR49-int LTR ERV1 1861 2224 -4107 4200 123 37 16 chr3 21199911 21200820 -206323758 + LTR49-int LTR ERV1 199 1262 -5590 4475 80 67 7 chr3 21200821 21201512 -206323066 + LTR49-int LTR ERV1 1764 2495 -4103 1169 181 95 0 chr3 21201512 21201744 -206322834 - LTR8 LTR ERV1 -434 257 4 3004 158 19 45 chr3 21201745 21202410 -206322168 + pTR5 LTR ERV1 743 1390 -1048 * 5888 235 7 36 chr3 21202408 21204267 -206320311 - Harlequin LTR ERV1 -1264 6004 4062 4950 84 34 0 chr3 21204238 21204964 -206319614 - Harlequin LTR ERV1 -4324 2572 1822 * 393 193 169 0 chr3 21204969 21205052 -206319526 + LTR8 LTR ERV1 156 252 -439 357 130 0 0 chr3 21205055 21205109 -206319469 - Harlequin LTR ERV1 -5176 1720 1667 374 97 21 86 chr3 21205109 21205202 -206319376 - L1PA8 LINE L1 0 6172 6086 4632 153 44 10 chr3 21205413 21206568 -206318010 - L1PB3 LINE L1 -135 6019 4834 8009 32 0 0 chr3 21206569 21207579 -206316999 - L1PA5 LINE L1 -3 6151 5138 7728 25 0 0 chr3 21207579 21208474 -206316104 + L1PA5 LINE L1 4267 5161 -985 1175 66 13 0 chr3 21208474 21208625 -206315953 - LTR10A-int LTR ERV1 -2850 2736 2584 * 7741 197 23 19 chr3 21208596 21211315 -206313263 - LTR10A-int LTR ERV1 -3015 4112 1384 795 183 27 98 chr3 21211307 21211563 -206313015 - LTR10A-int LTR ERV1 -5839 810 506 * 1581 200 32 6 chr3 21211556 21211871 -206312707 - LTR10A-int LTR ERV1 -6324 325 3 3211 114 41 63 chr3 21211884 21212443 -206312135 - LTR10A LTR ERV1 -62 547 1 6408 156 56 9 chr3 21212443 21213979 -206310599 - L1PBb LINE L1 -3424 2779 1096 2485 67 7 0 chr3 21213979 21214276 -206310302 + AluY SINE Alu 1 299 -12 6408 156 56 9 chr3 21214276 21215016 -206309562 - L1PBb LINE L1 -5107 1096 393 1044 204 39 27 chr3 21216177 21216437 -206308141 - L1MB7 LINE L1 -20 6164 5902 25 75 0 0 chr3 21216441 21216494 -206308084 + AT_rich Low_complexity Low_complexity 1 53 0 434 255 141 67 chr3 21216502 21216561 -206308017 - L1ME4a LINE L1 -158 5963 5905 1722 238 78 9 chr3 21216561 21217087 -206307491 - L1MB7 LINE L1 -290 5894 5333 1020 106 0 0 chr3 21217095 21217227 -206307351 - L1PA15 LINE L1 -5 6160 6029 258 32 0 0 chr3 21217239 21217295 -206307283 - AluY SINE Alu 0 305 250 1376 77 22 11 chr3 21217295 21217476 -206307102 - AluY SINE Alu -128 183 1 1335 121 24 5 chr3 21217476 21217682 -206306896 - L1PA15 LINE L1 -126 6039 5830 735 166 17 66 chr3 21217682 21217731 -206306847 - L1MB7 LINE L1 -823 5323 5273 2370 60 0 0 chr3 21217731 21218038 -206306540 - AluY SINE Alu 0 307 1 735 166 17 66 chr3 21218038 21218167 -206306411 - L1MB7 LINE L1 -873 5273 5152 6221 211 43 55 chr3 21218386 21219344 -206305234 - L1MB7 LINE L1 -982 5164 4196 1151 167 18 0 chr3 21219344 21219512 -206305066 - FAM SINE Alu -4 171 1 6221 211 43 55 chr3 21219512 21219798 -206304780 - L1MB7 LINE L1 -1950 4196 3908 1944 109 32 7 chr3 21219798 21220081 -206304497 - AluSg SINE Alu -18 292 3 2156 124 0 0 chr3 21220083 21220373 -206304205 - AluSq SINE Alu -23 290 1 6221 211 43 55 chr3 21220373 21220818 -206303760 - L1MB7 LINE L1 -2239 3907 3496 495 0 0 0 chr3 21220818 21220873 -206303705 + (TG)n Simple_repeat Simple_repeat 2 56 0 6221 211 43 55 chr3 21220873 21221173 -206303405 - L1MB7 LINE L1 -2650 3496 3194 26 0 0 0 chr3 21221396 21221422 -206303156 + AT_rich Low_complexity Low_complexity 1 26 0 216 0 0 0 chr3 21221422 21221446 -206303132 + (G)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr3 21221527 21221549 -206303029 + GC_rich Low_complexity Low_complexity 1 22 0 187 167 0 0 chr3 21221579 21221609 -206302969 + C-rich Low_complexity Low_complexity 1 30 0 35 0 0 0 chr3 21221660 21221695 -206302883 + GC_rich Low_complexity Low_complexity 1 35 0 30 59 0 0 chr3 21221735 21221769 -206302809 + AT_rich Low_complexity Low_complexity 1 34 0 6036 108 105 126 chr3 21221907 21223312 -206301266 + pTR5 LTR ERV1 1063 2438 0 4204 135 95 24 chr3 21223313 21224201 -206300377 + MER4-int LTR ERV1 2729 3679 -2919 13406 110 55 11 chr3 21224202 21226316 -206298262 + MER4-int LTR ERV1 3837 6043 -555 845 145 14 14 chr3 21226473 21226611 -206297967 + MER4B LTR ERV1 455 592 -18 14224 167 25 10 chr3 21226611 21230267 -206294311 + L1PA14 LINE L1 2458 6160 -1 497 135 0 11 chr3 21230660 21230749 -206293829 - L1MB7 LINE L1 -8 6176 6089 186 242 45 61 chr3 21230761 21230827 -206293751 - L3 LINE CR1 -19 1558 1494 241 279 0 16 chr3 21231186 21231247 -206293331 - MIR SINE MIR -130 78 19 324 326 79 18 chr3 21232040 21232267 -206292311 - MIR SINE MIR -8 254 14 14621 144 118 11 chr3 21232719 21236007 -206288571 + L1PA16 LINE L1 3 3643 -3219 11599 179 23 21 chr3 21236138 21238544 -206286034 + L1PB1 LINE L1 2632 5049 -1102 2283 118 0 0 chr3 21238544 21238840 -206285738 + AluSx SINE Alu 1 296 -16 11599 179 23 21 chr3 21238840 21239944 -206284634 + L1PB1 LINE L1 5049 6149 -2 25 31 0 0 chr3 21240230 21240262 -206284316 + AT_rich Low_complexity Low_complexity 1 32 0 1766 192 31 17 chr3 21240349 21240709 -206283869 + MLT1A1 LTR MaLR 1 365 0 279 200 24 12 chr3 21240709 21240794 -206283784 + (CATA)n Simple_repeat Simple_repeat 3 88 0 5887 130 19 1 chr3 21241159 21242049 -206282529 + HSMAR2 DNA Mariner 1 906 -396 3100 193 45 19 chr3 21242049 21242744 -206281834 + L1 LINE L1 3943 4655 -1491 1403 173 37 9 chr3 21242746 21243065 -206281513 - MSTA LTR MaLR -2 426 1 5097 129 65 15 chr3 21243065 21244529 -206280049 + L1PA16 LINE L1 5367 6878 -4 770 204 69 33 chr3 21244530 21244805 -206279773 + L1M4 LINE L1 2951 3235 -2911 3214 122 31 68 chr3 21245006 21245261 -206279317 + MER41C LTR ERV1 1 264 -290 2332 65 0 0 chr3 21245261 21245537 -206279041 + AluY SINE Alu 17 292 -19 3214 122 31 68 chr3 21245537 21245856 -206278722 + MER41C LTR ERV1 264 554 0 2593 74 38 69 chr3 21245876 21245964 -206278614 + PRIMA41-int LTR ERV1 525 614 -7142 2004 132 27 0 chr3 21245964 21246259 -206278319 - AluSq SINE Alu -9 304 2 2593 74 38 69 chr3 21246259 21246589 -206277989 + PRIMA41-int LTR ERV1 614 930 -6826 * 29318 120 22 12 chr3 21246581 21250892 -206273686 + PRIMA41-int LTR ERV1 1363 5720 -2036 3062 241 78 9 chr3 21250892 21251818 -206272760 + L1PB1 LINE L1 22 1011 -5852 15284 190 18 14 chr3 21251850 21257004 -206267574 + L1PB1 LINE L1 1297 6517 -350 230 152 0 0 chr3 21257001 21257047 -206267531 + L1MC4 LINE L1 6658 6703 -1339 * 269 226 28 66 chr3 21257108 21257289 -206267289 + (TTATA)n Simple_repeat Simple_repeat 1 174 0 2318 118 22 11 chr3 21257299 21257663 -206266915 + L1PB1 LINE L1 6498 6865 -2 13327 116 23 31 chr3 21257663 21259260 -206265318 + MER41C-int LTR ERV1 5706 7285 -471 2519 70 0 0 chr3 21259260 21259560 -206265018 + AluY SINE Alu 1 300 -11 13327 116 23 31 chr3 21259560 21260029 -206264549 + MER41C-int LTR ERV1 7285 7756 0 2150 122 58 0 chr3 21260029 21260357 -206264221 + MER41C LTR ERV1 1 347 -207 207 163 41 0 chr3 21260364 21260413 -206264165 + (TA)n Simple_repeat Simple_repeat 1 51 0 279 0 0 0 chr3 21260425 21260456 -206264122 + (CA)n Simple_repeat Simple_repeat 2 32 0 1248 134 20 10 chr3 21260456 21260657 -206263921 + MER41C LTR ERV1 352 554 0 2183 109 0 0 chr3 21260670 21260954 -206263624 - AluSx SINE Alu -17 295 12 2190 121 0 10 chr3 21261088 21261393 -206263185 + AluSg SINE Alu 1 302 -8 2071 97 0 0 chr3 21261515 21261774 -206262804 + AluSx SINE Alu 37 295 -17 318 314 47 24 chr3 21261853 21262002 -206262576 - MIR SINE MIR -67 141 19 2313 108 0 0 chr3 21262572 21262868 -206261710 - AluSq SINE Alu -17 296 1 219 69 0 0 chr3 21263592 21263621 -206260957 + (TCC)n Simple_repeat Simple_repeat 1 29 0 241 26 53 0 chr3 21263673 21263711 -206260867 + (TCC)n Simple_repeat Simple_repeat 3 42 0 219 69 0 0 chr3 21263760 21263789 -206260789 + (TCC)n Simple_repeat Simple_repeat 1 29 0 254 29 29 0 chr3 21263839 21263874 -206260704 + (TCC)n Simple_repeat Simple_repeat 3 38 0 225 65 0 0 chr3 21263924 21263955 -206260623 + (TCC)n Simple_repeat Simple_repeat 1 31 0 189 0 0 0 chr3 21266642 21266663 -206257915 + (TTTTTG)n Simple_repeat Simple_repeat 3 23 0 202 156 328 0 chr3 21267023 21267087 -206257491 + MER5A DNA MER1_type 71 155 -34 269 97 16 81 chr3 21267111 21267173 -206257405 - L2 LINE L2 -253 3060 3003 183 238 7 35 chr3 21267740 21267883 -206256695 + (TGG)n Simple_repeat Simple_repeat 1 139 0 306 337 6 0 chr3 21268081 21268244 -206256334 + (TGG)n Simple_repeat Simple_repeat 2 165 0 334 248 40 10 chr3 21268922 21269023 -206255555 - MIR SINE MIR -66 196 93 5270 69 19 1 chr3 21270256 21270941 -206253637 - L1PA7 LINE L1 -1 6153 5457 503 272 27 16 chr3 21271117 21271301 -206253277 - L1M4 LINE L1 -2549 3597 3412 648 163 0 102 chr3 21273232 21273379 -206251199 - AluJb SINE Alu -16 296 165 212 307 61 35 chr3 21273421 21273535 -206251043 + MIR SINE MIR 23 139 -123 2606 117 3 8 chr3 21273567 21273944 -206250634 - THE1C LTR MaLR 0 375 1 10772 114 9 27 chr3 21273944 21275554 -206249024 - THE1C-int LTR MaLR 0 1580 1 2635 101 5 11 chr3 21275554 21275931 -206248647 - THE1C LTR MaLR 0 375 1 23 0 0 0 chr3 21276014 21276037 -206248541 + AT_rich Low_complexity Low_complexity 1 23 0 2286 123 0 0 chr3 21276668 21276977 -206247601 - AluSx SINE Alu -1 311 3 276 259 49 34 chr3 21276980 21277185 -206247393 - L1M4 LINE L1 -842 5304 5097 1612 118 36 3 chr3 21277188 21277492 -206247086 + MER1A DNA MER1_type 1 363 -109 2229 161 39 31 chr3 21277492 21278036 -206246542 - MLT2A2 LTR ERVL 0 554 1 800 105 21 49 chr3 21278040 21278183 -206246395 + MER1A DNA MER1_type 395 533 0 1673 282 34 2 chr3 21278186 21278772 -206245806 - L1M4 LINE L1 -1052 5094 4490 8023 198 15 12 chr3 21278786 21280497 -206244081 + L1 LINE L1 3564 5279 -867 22 0 0 0 chr3 21280497 21280519 -206244059 + AT_rich Low_complexity Low_complexity 1 22 0 20738 37 1 1 chr3 21280520 21283864 -206240714 - L1PA4 LINE L1 -4 6151 2809 8812 190 21 39 chr3 21283851 21283896 -206240682 - L1 LINE L1 -1315 4831 4787 * 2025 139 3 0 chr3 21283896 21284205 -206240373 - AluSp SINE Alu -3 310 1 8812 190 21 39 chr3 21284205 21286298 -206238280 - L1 LINE L1 -1359 4787 2732 3184 122 63 17 chr3 21286313 21286836 -206237742 - LTR10A LTR ERV1 -62 547 1 6676 224 21 25 chr3 21286838 21288343 -206236235 - LTR10A-int LTR ERV1 -1 6648 5150 31 58 0 0 chr3 21288460 21288512 -206236066 + GC_rich Low_complexity Low_complexity 1 52 0 22 70 0 0 chr3 21288604 21288647 -206235931 + GC_rich Low_complexity Low_complexity 1 43 0 2852 132 13 13 chr3 21288788 21289414 -206235164 + L1PA16 LINE L1 5436 6162 -4 321 245 43 11 chr3 21289417 21289511 -206235067 - L1M4 LINE L1 -1665 4481 4385 3413 198 43 28 chr3 21289559 21290293 -206234285 - L1MB8 LINE L1 -81 6097 5331 2035 179 20 3 chr3 21290293 21290645 -206233933 + MLT1A1 LTR MaLR 4 361 -4 3413 198 43 28 chr3 21290645 21291106 -206233472 - L1MB8 LINE L1 -847 5331 4878 13997 190 26 22 chr3 21291239 21291858 -206232720 - L1PB2 LINE L1 0 6867 6252 2302 93 0 0 chr3 21291858 21292160 -206232418 + AluSc SINE Alu 1 302 -7 13997 190 26 22 chr3 21292160 21294381 -206230197 - L1PB2 LINE L1 -615 6252 4042 2203 118 0 6 chr3 21294381 21294695 -206229883 - AluSx SINE Alu 0 312 1 13997 190 26 22 chr3 21294695 21297237 -206227341 - L1PB2 LINE L1 -2825 4042 1395 3759 177 66 123 chr3 21297234 21298351 -206226227 - L1PB2 LINE L1 -5806 1057 4 * 1019 197 52 8 chr3 21298345 21298594 -206225984 - L1MB8 LINE L1 -2344 3802 3543 * 1384 30 0 0 chr3 21298599 21298765 -206225813 + AluY SINE Alu 146 311 0 1212 202 18 0 chr3 21298769 21299041 -206225537 - L1MB8 LINE L1 -2596 3550 3274 735 146 30 73 chr3 21299026 21299190 -206225388 + L1MA3 LINE L1 6148 6304 -1 * 7378 153 10 3 chr3 21299348 21301356 -206223222 - L1PA11 LINE L1 -11 6163 4123 4773 256 41 43 chr3 21301379 21303018 -206221560 - L1PA12 LINE L1 -4861 2723 2 578 221 43 0 chr3 21303274 21303414 -206221164 + MER104 DNA Tc2 35 180 0 1734 218 58 25 chr3 21304269 21304718 -206219860 + MLT1C LTR MaLR 1 464 -3 2746 263 59 23 chr3 21305674 21306435 -206218143 + L1M4 LINE L1 2 801 -5741 351 0 0 0 chr3 21306435 21306474 -206218104 + (CA)n Simple_repeat Simple_repeat 2 40 0 2746 263 59 23 chr3 21306474 21306612 -206217966 + L1M4 LINE L1 801 933 -5609 1203 312 89 46 chr3 21306688 21307228 -206217350 + L2 LINE L2 1783 2367 -947 239 0 32 0 chr3 21307228 21307259 -206217319 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 1203 312 89 46 chr3 21307259 21307480 -206217098 + L2 LINE L2 2367 2577 -737 440 241 132 17 chr3 21307518 21307692 -206216886 + MLT1J2 LTR MaLR 1 194 -256 474 176 98 59 chr3 21307728 21307881 -206216697 + MLT1J2 LTR MaLR 290 448 -2 577 300 47 6 chr3 21308762 21308932 -206215646 + MER91A DNA MER1_type 20 196 0 319 226 58 7 chr3 21308957 21309068 -206215510 - MIR SINE MIR -46 216 100 336 169 157 12 chr3 21310298 21310381 -206214197 + L2 LINE L2 3183 3277 -36 202 300 57 0 chr3 21310473 21310543 -206214035 - MIR SINE MIR -83 179 106 292 246 29 10 chr3 21311142 21311353 -206213225 + (CCGCT)n Simple_repeat Simple_repeat 1 215 0 260 265 60 17 chr3 21312254 21312371 -206212207 - LTR67 LTR ERVL -5 552 431 334 260 52 0 chr3 21312543 21312620 -206211958 - L2 LINE L2 -249 3023 2943 314 219 16 0 chr3 21312620 21312684 -206211894 - MLT1E1 LTR MaLR -589 65 1 361 249 72 55 chr3 21312780 21312961 -206211617 - HAL1b LINE L1 -1 1347 1164 250 284 12 0 chr3 21312961 21313042 -206211536 + GA-rich Low_complexity Low_complexity 1 82 0 686 272 64 79 chr3 21313043 21313379 -206211199 - HAL1b LINE L1 -195 1153 813 1925 113 7 24 chr3 21313379 21313701 -206210877 - AluSx SINE Alu 0 318 2 686 272 64 79 chr3 21313701 21313854 -206210724 - HAL1b LINE L1 -535 813 668 2031 123 3 3 chr3 21313854 21314156 -206210422 - AluSx SINE Alu -6 306 5 686 272 64 79 chr3 21314156 21314193 -206210385 - HAL1b LINE L1 -680 668 632 181 258 56 90 chr3 21314212 21314301 -206210277 - MIR SINE MIR -146 116 31 257 228 95 62 chr3 21314618 21314766 -206209812 - MLT1J LTR MaLR -28 587 366 367 228 25 0 chr3 21314820 21314899 -206209679 - MLT1J LTR MaLR -332 179 99 589 291 57 22 chr3 21315094 21315321 -206209257 - MIR SINE MIR -25 237 3 290 308 164 0 chr3 21315321 21315425 -206209153 - MER5B DNA MER1_type -1 177 57 391 296 34 9 chr3 21315435 21315585 -206208993 - MIR SINE MIR -65 197 45 200 206 69 138 chr3 21316663 21316823 -206207755 - MER5A DNA MER1_type -6 183 35 477 0 0 0 chr3 21316839 21316892 -206207686 + (CA)n Simple_repeat Simple_repeat 2 54 0 254 296 63 28 chr3 21317856 21317998 -206206580 + L3 LINE CR1 1351 1497 -80 200 330 78 29 chr3 21318005 21318108 -206206470 - MER5B DNA MER1_type -70 108 1 610 280 78 14 chr3 21318190 21318408 -206206170 - MIR SINE MIR -3 259 28 228 247 37 25 chr3 21318424 21318505 -206206073 + MIR SINE MIR 62 143 -65 251 291 23 36 chr3 21318841 21318971 -206205607 + MIR SINE MIR 20 146 -62 499 334 80 40 chr3 21319004 21319354 -206205224 - L2 LINE L2 0 3313 2950 193 138 0 0 chr3 21319374 21319403 -206205175 + L2 LINE L2 3225 3253 -19 2337 57 10 7 chr3 21320274 21320573 -206204005 + AluY SINE Alu 2 301 -10 788 214 44 6 chr3 21320829 21321011 -206203567 - MIR SINE MIR -22 240 52 322 333 0 28 chr3 21321420 21321528 -206203050 - MIR SINE MIR -138 124 20 213 300 88 0 chr3 21321558 21321638 -206202940 - L2 LINE L2 -44 3269 3183 349 234 11 43 chr3 21321754 21321848 -206202730 + L2 LINE L2 3223 3313 0 304 300 40 20 chr3 21321884 21321984 -206202594 - L2 LINE L2 -216 3056 2955 419 78 16 0 chr3 21322052 21322116 -206202462 + (CA)n Simple_repeat Simple_repeat 2 66 0 240 225 155 0 chr3 21322126 21322197 -206202381 + MER112 DNA MER1_type 125 206 -54 270 314 33 25 chr3 21323089 21323210 -206201368 + L2 LINE L2 2985 3106 -166 615 221 33 107 chr3 21323309 21323553 -206201025 + MIR SINE MIR 16 241 -21 192 77 0 0 chr3 21323665 21323691 -206200887 + (TCC)n Simple_repeat Simple_repeat 2 27 0 526 276 170 50 chr3 21323941 21324184 -206200394 + L2 LINE L2 2340 2552 -761 1513 256 101 24 chr3 21324184 21324731 -206199847 - MLT1G LTR MaLR 0 590 2 526 276 170 50 chr3 21324731 21325354 -206199224 + L2 LINE L2 2552 3299 -14 234 0 0 0 chr3 21325369 21325395 -206199183 + (TG)n Simple_repeat Simple_repeat 2 27 0 341 250 12 0 chr3 21325477 21325557 -206199021 + MIR SINE MIR 65 145 -63 251 200 9 67 chr3 21326528 21326633 -206197945 + G-rich Low_complexity Low_complexity 6 104 0 24 0 0 0 chr3 21326844 21326868 -206197710 + GC_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr3 21326877 21326901 -206197677 + GC_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr3 21328329 21328353 -206196225 + GC_rich Low_complexity Low_complexity 1 24 0 40 21 0 0 chr3 21328508 21328555 -206196023 + GC_rich Low_complexity Low_complexity 1 47 0 194 229 38 95 chr3 21328690 21328795 -206195783 + MIR3 SINE MIR 86 184 -24 850 226 19 28 chr3 21328936 21329148 -206195430 - MIR SINE MIR -7 255 46 396 322 28 17 chr3 21329393 21329570 -206195008 + MIR SINE MIR 59 237 -25 283 293 68 94 chr3 21329690 21330042 -206194536 - L2 LINE L2 -74 3239 2897 829 276 162 48 chr3 21330213 21330869 -206193709 + L2 LINE L2 2566 3311 -2 21 71 0 0 chr3 21332438 21332480 -206192098 + AT_rich Low_complexity Low_complexity 1 42 0 2207 121 3 3 chr3 21334166 21334472 -206190106 - AluSq SINE Alu -7 306 1 977 172 11 1 chr3 21334754 21334975 -206189603 - L1MCa LINE L1 -4979 1628 1204 2137 147 0 3 chr3 21334987 21335300 -206189278 - AluSx SINE Alu 0 312 1 873 152 23 0 chr3 21335301 21335433 -206189145 - AluJo SINE Alu -177 135 1 358 236 55 0 chr3 21335435 21335545 -206189033 - L1MCa LINE L1 -5248 1178 1063 10875 148 31 12 chr3 21335557 21335707 -206188871 - L1MA2 LINE L1 0 6304 6158 2010 116 41 10 chr3 21335707 21335727 -206188851 - AluSp SINE Alu -12 301 283 225 0 0 0 chr3 21335727 21335752 -206188826 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2010 116 41 10 chr3 21335752 21336023 -206188555 - AluSp SINE Alu -30 283 1 * 2257 117 7 0 chr3 21336023 21336322 -206188256 - AluSq SINE Alu -12 301 1 10875 148 31 12 chr3 21336322 21338636 -206185942 - L1MA2 LINE L1 -445 5859 3770 2037 148 7 0 chr3 21338636 21338933 -206185645 - AluSx SINE Alu -13 299 1 10875 148 31 12 chr3 21338933 21339645 -206184933 - L1MA2 LINE L1 -2534 3770 3073 * 25895 82 8 3 chr3 21339640 21344214 -206180364 - L1PA7 LINE L1 0 6469 1867 42368 42 4 3 chr3 21344215 21350360 -206174218 - L1PA4 LINE L1 -2 6153 2 12201 107 5 7 chr3 21350360 21352251 -206172327 - L1PA7 LINE L1 -4579 1872 5 2039 117 37 27 chr3 21352257 21352555 -206172023 - AluSp SINE Alu -12 301 1 2390 224 23 5 chr3 21352591 21353195 -206171383 - L1MA2 LINE L1 -3065 3081 2467 1203 209 72 0 chr3 21353197 21353504 -206171074 - L1MCa LINE L1 -5344 1082 754 243 62 0 0 chr3 21354095 21354127 -206170451 - MIR SINE MIR -118 144 113 483 239 83 63 chr3 21354652 21354760 -206169818 - MIR SINE MIR -18 244 140 1323 166 42 143 chr3 21354760 21355194 -206169384 - MLT1B LTR MaLR 0 390 1 483 239 83 63 chr3 21355194 21355300 -206169278 - MIR SINE MIR -122 140 31 219 333 0 0 chr3 21355341 21355407 -206169171 + MIR SINE MIR 160 225 -37 2655 274 112 30 chr3 21355820 21356516 -206168062 + L1MEc LINE L1 53 691 -5705 1562 219 0 3 chr3 21356516 21356799 -206167779 + AluJo SINE Alu 1 282 -30 2655 274 112 30 chr3 21356799 21357634 -206166944 + L1MEc LINE L1 691 1875 -4521 818 175 0 0 chr3 21357639 21357759 -206166819 - FLAM_A SINE Alu -13 120 1 1973 128 0 3 chr3 21357917 21358221 -206166357 - Tigger2 DNA MER2_type -1 2717 2415 1570 122 9 107 chr3 21358218 21358546 -206166032 - Tigger2a DNA MER2_type -138 296 1 * 297 0 0 0 chr3 21358563 21358596 -206165982 + (CA)n Simple_repeat Simple_repeat 2 34 0 204 238 0 0 chr3 21358596 21358638 -206165940 + (TATATG)n Simple_repeat Simple_repeat 5 46 0 1357 125 175 12 chr3 21358728 21359000 -206165578 - AluSg1 SINE Alu 0 311 1 2554 50 0 3 chr3 21359041 21359340 -206165238 - AluY SINE Alu -13 298 1 228 233 75 83 chr3 21359700 21359820 -206164758 + MER5B DNA MER1_type 1 119 -59 287 279 82 74 chr3 21359874 21359996 -206164582 - MIR SINE MIR -90 172 50 209 319 99 60 chr3 21360047 21360329 -206164249 + L2 LINE L2 2341 2633 -681 * 372 300 75 57 chr3 21360316 21360543 -206164035 + L2 LINE L2 3042 3272 0 241 322 102 0 chr3 21360603 21360721 -206163857 + L2 LINE L2 3141 3270 -2 728 290 64 53 chr3 21360730 21361089 -206163489 + L2 LINE L2 2951 3313 0 213 308 88 0 chr3 21361096 21361187 -206163391 + MIR SINE MIR 64 162 -100 1319 262 51 15 chr3 21361215 21361608 -206162970 + MLT1I LTR MaLR 2 408 -1 392 248 144 13 chr3 21361781 21361934 -206162644 - MIR SINE MIR -70 192 20 209 307 228 0 chr3 21362633 21362747 -206161831 - MIR SINE MIR -77 185 46 186 261 23 85 chr3 21362867 21362997 -206161581 + MIR SINE MIR 31 152 -110 533 329 38 41 chr3 21363166 21363510 -206161068 - L1ME LINE L1 -513 5651 5309 195 272 140 44 chr3 21363700 21363912 -206160666 + L2 LINE L2 2744 3023 -249 2210 106 0 0 chr3 21363912 21364196 -206160382 + AluSg SINE Alu 7 290 -20 195 272 140 44 chr3 21364196 21364255 -206160323 + L2 LINE L2 3023 3075 -197 846 276 162 49 chr3 21365306 21365963 -206158615 + L2 LINE L2 2566 3311 -2 234 292 21 0 chr3 21366292 21366388 -206158190 - L1ME3 LINE L1 -215 5947 5850 340 259 33 106 chr3 21367141 21367415 -206157163 + MER102a DNA MER1_type 72 325 -5 409 286 62 26 chr3 21367751 21367978 -206156600 + L2 LINE L2 2625 2859 -455 200 271 21 0 chr3 21368162 21368210 -206156368 + L2 LINE L2 3195 3243 -70 311 288 50 58 chr3 21368608 21368747 -206155831 - MIR SINE MIR -55 153 16 192 40 0 0 chr3 21368785 21368810 -206155768 + (CA)n Simple_repeat Simple_repeat 2 26 0 285 171 143 14 chr3 21368874 21368944 -206155634 - MIR SINE MIR -121 141 63 269 227 15 0 chr3 21369404 21369470 -206155108 + MER116 DNA Mariner 2 68 -12 791 251 64 30 chr3 21369733 21370143 -206154435 - L2 LINE L2 -310 3003 2564 792 180 60 18 chr3 21370629 21370796 -206153782 - MLT1J LTR MaLR -297 214 41 321 286 31 79 chr3 21371031 21371258 -206153320 - MLT1K LTR MaLR -214 374 159 1543 169 35 58 chr3 21371304 21371648 -206152930 - MLT1B LTR MaLR 0 390 55 227 250 148 37 chr3 21371751 21371859 -206152719 - L2 LINE L2 -221 3051 2932 429 215 23 23 chr3 21372069 21372241 -206152337 + CT-rich Low_complexity Low_complexity 1 172 0 204 40 0 0 chr3 21372499 21372524 -206152054 + (TTCCC)n Simple_repeat Simple_repeat 2 26 0 1460 181 75 10 chr3 21372551 21372843 -206151735 - AluJo SINE Alu -1 311 1 303 298 31 31 chr3 21373146 21373311 -206151267 - L1ME3 LINE L1 -734 5428 5292 205 258 118 43 chr3 21373543 21373636 -206150942 - MIR3 SINE MIR -53 155 56 299 295 135 8 chr3 21373742 21373905 -206150673 + MIR3 SINE MIR 11 191 -59 463 278 66 59 chr3 21374044 21374317 -206150261 + L2 LINE L2 2500 2774 -540 359 280 133 0 chr3 21374334 21374552 -206150026 + L2 LINE L2 2888 3134 -179 331 244 92 42 chr3 21374660 21374779 -206149799 + MIR SINE MIR 138 262 0 410 311 73 51 chr3 21375011 21375284 -206149294 + L2 LINE L2 3010 3288 -25 329 350 173 9 chr3 21375461 21375675 -206148903 - L3 LINE CR1 -722 855 607 309 296 0 10 chr3 21375762 21375860 -206148718 - MER103 DNA DNA -13 153 57 23 33 0 0 chr3 21376279 21376309 -206148269 + AT_rich Low_complexity Low_complexity 1 30 0 399 89 0 0 chr3 21377599 21377655 -206146923 + (CA)n Simple_repeat Simple_repeat 2 57 0 765 300 56 4 chr3 21377886 21378119 -206146459 - MIR SINE MIR 0 262 18 249 284 0 0 chr3 21378149 21378223 -206146355 - L2 LINE L2 -284 2988 2915 319 286 87 24 chr3 21378897 21379023 -206145555 - MIR SINE MIR -70 192 59 435 213 28 19 chr3 21379579 21379687 -206144891 + L2 LINE L2 3204 3312 -1 449 279 62 37 chr3 21379967 21380128 -206144450 + MIR SINE MIR 77 241 -21 286 275 67 75 chr3 21380387 21380507 -206144071 + MIR3 SINE MIR 62 180 -28 432 253 129 50 chr3 21380752 21380954 -206143624 + MIR SINE MIR 35 252 -10 347 315 21 35 chr3 21381116 21381259 -206143319 + MIR SINE MIR 108 248 -14 339 291 146 0 chr3 21381317 21381427 -206143151 - L2 LINE L2 0 3313 3188 576 154 64 8 chr3 21381645 21381765 -206142813 - MIR SINE MIR -71 137 36 392 253 73 73 chr3 21381956 21382134 -206142444 - MIR SINE MIR -8 254 77 486 201 44 84 chr3 21383111 21383285 -206141293 - MIR SINE MIR -65 143 14 230 343 28 0 chr3 21383447 21383555 -206141023 - L1MEd LINE L1 -5568 551 441 1414 51 0 0 chr3 21384045 21384223 -206140355 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2145 133 1 1 chr3 21384223 21384517 -206140061 - AluSx SINE Alu -39 273 1 401 246 128 77 chr3 21384671 21384866 -206139712 - MIR SINE MIR -35 227 23 290 359 58 0 chr3 21385308 21385411 -206139167 - MIR SINE MIR -51 211 103 510 289 47 26 chr3 21385653 21385843 -206138735 - MIR SINE MIR -48 214 21 223 366 181 12 chr3 21386558 21386801 -206137777 + L3 LINE CR1 555 838 -739 456 174 0 0 chr3 21386815 21386907 -206137671 + CT-rich Low_complexity Low_complexity 3 94 0 335 309 246 5 chr3 21387700 21387920 -206136658 + L2 LINE L2 3000 3272 0 180 298 0 0 chr3 21388253 21388300 -206136278 - MIR3 SINE MIR -53 155 109 811 302 126 29 chr3 21391141 21391562 -206133016 + L2 LINE L2 2852 3313 0 400 191 191 0 chr3 21391607 21391733 -206132845 - MER53 DNA DNA 0 189 40 4228 206 42 31 chr3 21391744 21392981 -206131597 - L1MD1 LINE L1 -1 6241 4992 25 75 0 0 chr3 21392981 21393034 -206131544 + AT_rich Low_complexity Low_complexity 1 53 0 1798 186 0 12 chr3 21393054 21393387 -206131191 - L1MB3 LINE L1 -2 6181 5853 200 328 48 16 chr3 21393571 21393696 -206130882 - MIR3 SINE MIR -65 143 15 799 276 25 21 chr3 21394445 21394688 -206129890 - MIR SINE MIR -12 250 7 594 240 105 40 chr3 21395414 21395566 -206129012 + MIR SINE MIR 48 217 -45 786 194 156 0 chr3 21395566 21395746 -206128832 - MER3 DNA MER1_type 0 209 2 594 240 105 40 chr3 21395746 21395793 -206128785 + MIR SINE MIR 217 260 -2 199 348 70 0 chr3 21396413 21396528 -206128050 - MIR SINE MIR -22 240 118 389 369 6 13 chr3 21396746 21396903 -206127675 - MIR SINE MIR -86 176 21 2045 123 3 3 chr3 21397006 21397308 -206127270 + AluSx SINE Alu 1 302 -10 218 309 15 0 chr3 21397380 21397448 -206127130 - MIR SINE MIR -77 185 117 447 318 50 11 chr3 21397585 21397764 -206126814 + MIR SINE MIR 56 241 -21 795 281 56 35 chr3 21398184 21398561 -206126017 + L2 LINE L2 2245 2629 -685 923 275 83 27 chr3 21398737 21399272 -206125306 + L2 LINE L2 2583 3154 -159 967 246 33 0 chr3 21399457 21399668 -206124910 - MIR SINE MIR -25 237 20 288 307 109 15 chr3 21399699 21399836 -206124742 - L2 LINE L2 0 3313 3164 405 184 4 45 chr3 21400179 21400445 -206124133 + (TGGA)n Simple_repeat Simple_repeat 1 254 0 24 71 0 0 chr3 21400451 21400479 -206124099 + GC_rich Low_complexity Low_complexity 1 28 0 304 270 167 29 chr3 21401238 21401442 -206123136 - L2 LINE L2 -198 3115 2884 500 219 130 34 chr3 21402196 21402342 -206122236 - MER5A DNA MER1_type -26 163 4 1169 201 75 60 chr3 21402353 21402672 -206121906 - MER33 DNA MER1_type 0 324 1 261 333 181 9 chr3 21402672 21402888 -206121690 - L3 LINE CR1 -105 1472 1220 338 277 23 54 chr3 21402942 21403072 -206121506 - MIR SINE MIR -84 178 53 312 27 0 0 chr3 21403939 21403976 -206120602 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 185 342 111 26 chr3 21403982 21404099 -206120479 - L2 LINE L2 -15 3298 3172 251 305 12 0 chr3 21404227 21404309 -206120269 - L2 LINE L2 -335 2978 2896 498 253 29 58 chr3 21404974 21405148 -206119430 + MER5B DNA MER1_type 5 173 -5 2969 162 21 0 chr3 21405305 21405816 -206118762 - L1MB7 LINE L1 0 6184 5663 281 289 18 24 chr3 21406337 21406503 -206118075 + L2 LINE L2 2871 3035 -237 1182 271 95 24 chr3 21406544 21407006 -206117572 - L2 LINE L2 -2 3311 2817 353 293 54 24 chr3 21407208 21407375 -206117203 - L1MC5 LINE L1 -187 7774 7603 201 154 0 0 chr3 21407642 21407681 -206116897 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 200 321 0 18 chr3 21408230 21408342 -206116236 + (TG)n Simple_repeat Simple_repeat 1 110 0 457 183 0 62 chr3 21408949 21409219 -206115359 + GA-rich Low_complexity Low_complexity 1 253 0 759 120 0 46 chr3 21409225 21409400 -206115178 + (GGA)n Simple_repeat Simple_repeat 2 168 0 761 318 74 19 chr3 21409567 21409985 -206114593 - LTR16A LTR ERVL -9 441 1 401 261 39 26 chr3 21410066 21410219 -206114359 + MIR SINE MIR 31 185 -77 277 281 132 0 chr3 21410633 21410747 -206113831 - LTR33 LTR ERVL -28 493 365 277 277 50 43 chr3 21411842 21411983 -206112595 - MIR3 SINE MIR -61 147 6 693 274 109 43 chr3 21412158 21412461 -206112117 - MLT1L LTR MaLR -8 607 285 183 217 22 167 chr3 21412514 21412652 -206111926 - MIR SINE MIR -75 133 16 615 283 55 81 chr3 21413006 21413388 -206111190 - MLT1K LTR MaLR -6 582 211 680 297 246 24 chr3 21414197 21414814 -206109764 - L3 LINE CR1 -58 1519 766 389 319 92 0 chr3 21415563 21415792 -206108786 - LTR16A LTR ERVL 0 450 201 556 232 106 50 chr3 21415878 21416076 -206108502 - MER63A DNA MER1_type 0 210 2 581 358 46 7 chr3 21416439 21416746 -206107832 - L1MC4a LINE L1 -1874 5934 5616 1001 266 113 6 chr3 21416918 21416982 -206107596 - LTR33 LTR ERVL 0 521 465 2243 183 15 29 chr3 21416982 21417436 -206107142 + L1MB8 LINE L1 5731 6178 0 1001 266 113 6 chr3 21417436 21417735 -206106843 - LTR33 LTR ERVL -56 465 119 184 176 0 0 chr3 21418127 21418161 -206106417 - L2 LINE L2 -18 3254 3221 4031 162 57 14 chr3 21418760 21419549 -206105029 - L1MB7 LINE L1 0 6184 5362 1518 300 30 35 chr3 21419566 21420245 -206104333 - L1ME3A LINE L1 -13 6157 5483 182 247 106 12 chr3 21420798 21420883 -206103695 + L2 LINE L2 3173 3265 -7 183 184 0 0 chr3 21421433 21421471 -206103107 + GA-rich Low_complexity Low_complexity 3 40 0 259 323 32 0 chr3 21421587 21421680 -206102898 + MER58A DNA MER1_type 1 96 -11 701 214 20 2 chr3 21421680 21421852 -206102726 - L1ME3 LINE L1 -226 5936 5765 287 193 114 11 chr3 21421855 21421943 -206102635 - MIR SINE MIR -67 141 45 32 0 0 0 chr3 21422880 21422912 -206101666 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr3 21423374 21423402 -206101176 + AT_rich Low_complexity Low_complexity 1 28 0 226 321 0 12 chr3 21423404 21423485 -206101093 - L1PB1 LINE L1 -174 5977 5898 432 0 0 0 chr3 21424037 21424085 -206100493 + (TG)n Simple_repeat Simple_repeat 2 49 0 546 266 0 0 chr3 21424613 21424790 -206099788 + (TGGA)n Simple_repeat Simple_repeat 1 177 0 409 244 49 34 chr3 21425123 21425278 -206099300 + MIR SINE MIR 105 262 0 475 294 112 6 chr3 21425526 21425696 -206098882 - Charlie8 DNA MER1_type -2205 212 25 318 290 75 0 chr3 21425743 21425850 -206098728 - MIR SINE MIR -61 147 33 189 0 0 0 chr3 21425933 21425954 -206098624 + (CA)n Simple_repeat Simple_repeat 2 22 0 1707 235 55 55 chr3 21427377 21427888 -206096690 - MLT1H LTR MaLR 0 549 39 324 252 170 0 chr3 21427997 21428132 -206096446 + L2 LINE L2 2423 2580 -734 304 200 147 0 chr3 21428187 21428262 -206096316 + MLT1J2 LTR MaLR 100 185 -265 258 233 17 0 chr3 21428295 21428355 -206096223 + MLT1J2 LTR MaLR 270 330 -120 345 235 182 0 chr3 21428460 21428592 -206095986 + L2 LINE L2 2886 3041 -231 869 246 84 0 chr3 21428698 21428913 -206095665 + MIR SINE MIR 5 237 -25 383 176 147 20 chr3 21428951 21429053 -206095525 + L2 LINE L2 3199 3313 0 2032 210 58 20 chr3 21430184 21430688 -206093890 + Charlie1b DNA MER1_type 1 523 0 413 268 56 91 chr3 21430750 21430856 -206093722 - MIR SINE MIR 0 262 154 3286 82 47 9 chr3 21430856 21431342 -206093236 + L1PB1 LINE L1 5678 6180 0 413 268 56 91 chr3 21431342 21431465 -206093113 - MIR SINE MIR -108 154 40 575 180 17 41 chr3 21431530 21431702 -206092876 - MER53 DNA DNA -20 169 2 2042 115 7 0 chr3 21432104 21432392 -206092186 - AluSx SINE Alu -22 290 1 228 246 51 51 chr3 21432398 21432536 -206092042 - L1ME4a LINE L1 0 6121 5984 487 322 60 21 chr3 21432625 21432858 -206091720 - L1MC4a LINE L1 -1982 5826 5585 269 333 57 21 chr3 21432971 21433112 -206091466 + L3 LINE CR1 1423 1568 -9 204 345 76 17 chr3 21433741 21433860 -206090718 + MIR SINE MIR 21 146 -116 221 333 191 14 chr3 21434488 21434629 -206089949 - MIR SINE MIR 0 262 97 591 350 0 18 chr3 21434713 21434936 -206089642 - MIR SINE MIR -37 225 7 1932 225 53 28 chr3 21434937 21435430 -206089148 - MLT1D LTR MaLR 0 505 1 900 208 19 42 chr3 21435890 21436102 -206088476 + MER3 DNA MER1_type 3 209 0 832 264 113 4 chr3 21437684 21437915 -206086663 - MIR SINE MIR -5 257 2 194 286 0 0 chr3 21437935 21437984 -206086594 - L2 LINE L2 -12 3260 3212 310 229 229 0 chr3 21438034 21438178 -206086400 - LTR33 LTR ERVL 0 521 345 309 238 74 0 chr3 21438328 21438450 -206086128 - LTR33 LTR ERVL -387 134 4 275 193 48 0 chr3 21439507 21439590 -206084988 - LTR33 LTR ERVL -134 387 301 242 270 103 16 chr3 21439601 21439727 -206084851 - LTR33 LTR ERVL -384 137 1 405 273 6 28 chr3 21440174 21440319 -206084259 + MIR SINE MIR 54 195 -64 465 120 104 32 chr3 21440395 21440520 -206084058 - MER3 DNA MER1_type 0 2615 2482 353 213 50 0 chr3 21440520 21440600 -206083978 - MER3 DNA MER1_type -80 129 46 301 211 17 23 chr3 21440755 21440846 -206083732 - MIR SINE MIR -59 149 59 259 412 52 14 chr3 21441122 21441413 -206083165 - L3 LINE CR1 -14 1563 1262 344 257 88 52 chr3 21441774 21441910 -206082668 - MIR SINE MIR -78 184 44 341 333 34 0 chr3 21442045 21442162 -206082416 + MIR SINE MIR 72 192 -70 190 265 265 10 chr3 21442800 21442898 -206081680 + MIR SINE MIR 23 145 -63 298 341 82 13 chr3 21443155 21443291 -206081287 - MIR3 SINE MIR -34 174 24 1271 227 58 19 chr3 21443291 21443599 -206080979 + MER33 DNA MER1_type 1 320 -4 298 341 82 13 chr3 21443599 21443625 -206080953 - MIR3 SINE MIR -184 24 1 181 266 13 51 chr3 21443784 21443863 -206080715 - MIR SINE MIR -82 126 51 182 268 0 0 chr3 21444411 21444452 -206080126 + MIR SINE MIR 109 149 -59 494 330 25 6 chr3 21444808 21445070 -206079508 + L1MC4a LINE L1 5638 5824 -346 578 294 95 32 chr3 21445751 21445972 -206078606 - MIR SINE MIR -5 257 23 276 325 17 34 chr3 21446065 21446182 -206078396 - MIR SINE MIR -142 120 6 838 298 104 8 chr3 21447281 21447776 -206076802 - L2 LINE L2 -6 3307 2775 204 361 101 35 chr3 21448064 21448233 -206076345 + MIR SINE MIR 2 181 -81 189 231 115 0 chr3 21448258 21448310 -206076268 + L2 LINE L2 1767 1824 -1490 * 299 268 12 24 chr3 21448294 21448376 -206076202 + MIR SINE MIR 63 143 -65 272 320 40 20 chr3 21448792 21448942 -206075636 + L3 LINE CR1 1272 1424 -153 496 133 10 10 chr3 21449220 21449318 -206075260 + GA-rich Low_complexity Low_complexity 2 99 0 366 135 0 0 chr3 21449318 21449370 -206075208 + (GGAA)n Simple_repeat Simple_repeat 2 53 0 334 399 59 16 chr3 21449377 21449680 -206074898 + HAL1 LINE L1 880 1195 -1312 661 241 8 34 chr3 21449705 21450141 -206074437 + GA-rich Low_complexity Low_complexity 1 424 0 880 275 44 39 chr3 21500416 21500776 -206023802 + L1 LINE L1 2418 2779 -3367 253 202 81 0 chr3 21500801 21500900 -206023678 - L1M3d LINE L1 -4790 1775 1669 1429 198 32 13 chr3 21500901 21501215 -206023363 - LTR10B LTR ERV1 0 547 249 15263 259 42 34 chr3 21501272 21506535 -206018043 - HERVI LTR ERV1 -17 7768 2284 182 333 122 0 chr3 21506535 21506625 -206017953 - MER5A DNA MER1_type -16 173 73 15263 259 42 34 chr3 21506625 21508271 -206016307 - HERVI LTR ERV1 -5501 2284 652 2111 226 73 11 chr3 21508301 21508846 -206015732 - HERVI LTR ERV1 -6066 583 5 1464 161 35 21 chr3 21508846 21509132 -206015446 - LTR10B LTR ERV1 0 547 258 626 259 72 44 chr3 21509211 21509710 -206014868 - L1M3d LINE L1 -5277 1265 753 427 269 17 0 chr3 21509720 21509839 -206014739 - L1M3d LINE L1 -5724 922 802 358 303 63 34 chr3 21510142 21510380 -206014198 - L1M3d LINE L1 -6293 249 5 1808 164 17 7 chr3 21510796 21511088 -206013490 + AluJb SINE Alu 1 295 -17 28 48 0 0 chr3 21512548 21512590 -206011988 + AT_rich Low_complexity Low_complexity 1 42 0 1601 163 65 4 chr3 21512733 21513009 -206011569 - AluJb SINE Alu -19 293 1 2194 119 0 0 chr3 21515633 21515928 -206008650 + AluSx SINE Alu 1 295 -17 5573 135 50 12 chr3 21517356 21518365 -206006213 - L1MA9 LINE L1 -1 6311 5265 1283 244 78 24 chr3 21518491 21518992 -206005586 - L1ME2 LINE L1 -34 6130 5603 1694 107 137 0 chr3 21518992 21519255 -206005323 + AluSq SINE Alu 3 301 -2 1230 138 0 10 chr3 21519281 21519476 -206005102 + AluSg/x SINE Alu 118 310 0 861 265 61 14 chr3 21519480 21519964 -206004614 - L1ME2 LINE L1 -547 5617 5078 572 224 0 0 chr3 21519981 21520106 -206004472 + L1 LINE L1 3745 3869 -2277 1363 279 29 7 chr3 21520144 21520693 -206003885 - L1ME2 LINE L1 -1098 5048 4488 6334 177 26 29 chr3 21520705 21521204 -206003374 + L1PA16 LINE L1 3564 4063 -2103 2680 40 0 0 chr3 21521204 21521505 -206003073 + AluY SINE Alu 1 301 -10 6334 177 26 29 chr3 21521505 21523626 -206000952 + L1PA16 LINE L1 4063 6165 -1 901 254 17 50 chr3 21524080 21524541 -206000037 + L1PA16 LINE L1 5719 6164 -2 201 74 0 0 chr3 21524554 21524581 -205999997 + (A)n Simple_repeat Simple_repeat 1 27 0 240 227 0 80 chr3 21524594 21524682 -205999896 - L1MEd LINE L1 -5943 176 96 21 36 0 0 chr3 21525276 21525304 -205999274 + AT_rich Low_complexity Low_complexity 1 28 0 54 49 0 0 chr3 21525594 21525676 -205998902 + AT_rich Low_complexity Low_complexity 1 82 0 227 287 150 31 chr3 21525685 21526068 -205998510 + L1M4 LINE L1 3625 3961 -2185 2393 78 0 0 chr3 21526068 21526363 -205998215 - AluY SINE Alu -16 295 1 227 287 150 31 chr3 21526363 21526947 -205997631 + L1M4 LINE L1 3961 4707 -1439 349 272 149 0 chr3 21527042 21527237 -205997341 + L1M4 LINE L1 4748 4971 -1175 23 0 0 0 chr3 21527313 21527336 -205997242 + AT_rich Low_complexity Low_complexity 1 23 0 347 304 38 16 chr3 21527521 21527705 -205996873 - L1ME3A LINE L1 -223 5947 5760 574 163 70 47 chr3 21528637 21528766 -205995812 - FLAM_C SINE Alu 0 133 2 597 137 67 27 chr3 21528769 21528942 -205995636 - L1M3 LINE L1 -685 5495 5303 927 197 6 11 chr3 21528944 21529122 -205995456 - AluJb SINE Alu -5 307 131 257 91 0 0 chr3 21529124 21529168 -205995410 - L1M3 LINE L1 -845 5301 5258 1070 195 35 4 chr3 21529189 21529415 -205995163 - L1MC4 LINE L1 -1096 6946 6714 1258 245 26 9 chr3 21529427 21529770 -205994808 - L1MC4 LINE L1 -1927 5881 5533 644 273 72 10 chr3 21529877 21530354 -205994224 - L1ME3A LINE L1 -487 5675 5175 477 247 66 35 chr3 21530368 21530627 -205993951 - L1MC5 LINE L1 -36 7925 7659 1976 149 7 0 chr3 21530917 21531205 -205993373 + AluJo SINE Alu 2 291 -21 761 165 16 0 chr3 21531322 21531443 -205993135 + AluJb SINE Alu 164 286 -26 744 216 114 74 chr3 21532293 21532710 -205991868 + MLT1F1 LTR MaLR 40 475 -92 311 326 4 28 chr3 21532968 21533258 -205991320 + CT-rich Low_complexity Low_complexity 1 282 0 3306 159 51 13 chr3 21535292 21536326 -205988252 - L1PBa LINE L1 -3423 3439 2357 6622 33 0 2 chr3 21536350 21537169 -205987409 - L1PA4 LINE L1 0 6155 5339 * 9344 41 5 9 chr3 21537162 21538893 -205985685 + L1PA4 LINE L1 4205 5923 -232 208 203 17 17 chr3 21539119 21539178 -205985400 + CT-rich Low_complexity Low_complexity 2 60 0 212 295 90 0 chr3 21540516 21540594 -205983984 - MIR SINE MIR -43 219 135 180 327 129 10 chr3 21545182 21545283 -205979295 + MER5B DNA MER1_type 64 176 -2 202 281 148 31 chr3 21545468 21545596 -205978982 - MIR SINE MIR -99 163 21 408 267 84 84 chr3 21546087 21546383 -205978195 + HAL1 LINE L1 42 337 -2170 230 150 183 0 chr3 21546464 21546524 -205978054 + L2 LINE L2 2474 2544 -770 1084 258 183 14 chr3 21546534 21546956 -205977622 + L2 LINE L2 2821 3313 0 3923 100 34 0 chr3 21546993 21547554 -205977024 - LTR19B LTR ERV1 0 580 1 312 229 199 42 chr3 21548444 21548610 -205975968 + L2 LINE L2 3117 3308 -5 253 292 46 0 chr3 21548832 21548897 -205975681 - L2 LINE L2 -8 3305 3238 195 295 104 28 chr3 21549005 21549222 -205975356 - L2 LINE L2 -277 3036 2750 300 325 52 45 chr3 21549707 21549861 -205974717 + MIR3 SINE MIR 51 205 -3 187 267 0 0 chr3 21549878 21549923 -205974655 + L2 LINE L2 3268 3312 -1 * 208 322 23 0 chr3 21549922 21550009 -205974569 - MIR3 SINE MIR -52 156 68 494 327 57 9 chr3 21550166 21550377 -205974201 + MIR SINE MIR 32 252 -10 217 306 16 0 chr3 21550631 21550693 -205973885 + MIR SINE MIR 85 147 -61 26 50 0 0 chr3 21550758 21550798 -205973780 + GC_rich Low_complexity Low_complexity 1 40 0 218 271 82 0 chr3 21552564 21552649 -205971929 - MIR SINE MIR -58 150 59 212 293 152 10 chr3 21552664 21552763 -205971815 + MIR SINE MIR 21 133 -75 192 289 0 0 chr3 21552794 21552832 -205971746 + L2 LINE L2 3254 3291 -22 428 342 19 6 chr3 21553084 21553242 -205971336 - MIR SINE MIR -92 170 11 186 43 0 0 chr3 21553320 21553343 -205971235 + (TG)n Simple_repeat Simple_repeat 2 24 0 245 197 30 15 chr3 21553344 21553410 -205971168 + (TA)n Simple_repeat Simple_repeat 2 68 0 399 235 49 0 chr3 21553705 21553807 -205970771 + MIR SINE MIR 39 145 -117 486 271 187 5 chr3 21554199 21554402 -205970176 - MIR SINE MIR -2 260 21 2155 242 8 49 chr3 21554888 21555484 -205969094 + L1ME2 LINE L1 5559 6130 -34 319 294 55 12 chr3 21555357 21555520 -205969058 + L1MA10 LINE L1 6165 6334 0 * 25 75 0 0 chr3 21555520 21555573 -205969005 + AT_rich Low_complexity Low_complexity 1 53 0 780 271 45 26 chr3 21555913 21556182 -205968396 - MLT1K LTR MaLR -38 550 277 474 212 13 13 chr3 21556182 21556333 -205968245 + CT-rich Low_complexity Low_complexity 2 152 0 386 316 80 16 chr3 21556362 21556549 -205968029 - MLT1K LTR MaLR -306 282 84 861 136 0 0 chr3 21556551 21556676 -205967902 + FLAM_C SINE Alu 1 125 -18 22 0 0 0 chr3 21556683 21556705 -205967873 + AT_rich Low_complexity Low_complexity 1 22 0 200 364 23 0 chr3 21556865 21556953 -205967625 + MIR3 SINE MIR 104 193 -15 414 330 71 9 chr3 21557224 21557436 -205967142 + MIR SINE MIR 18 242 -20 259 324 7 22 chr3 21558034 21558170 -205966408 - MLT1K LTR MaLR -23 565 432 315 176 98 78 chr3 21558285 21558387 -205966191 - MLT1K LTR MaLR -404 184 81 193 182 91 36 chr3 21559421 21559476 -205965102 + MIR SINE MIR 117 174 -88 276 306 6 57 chr3 21560872 21561029 -205963549 - L2 LINE L2 -96 3176 3028 1066 153 16 0 chr3 21562470 21562653 -205961925 - Tigger4(Zombi) DNA MER2_type -3 2728 2543 683 179 8 0 chr3 21562652 21562775 -205961803 - Tigger4(Zombi) DNA MER2_type -2607 124 1 * 209 258 86 21 chr3 21564102 21564195 -205960383 + MIR SINE MIR 60 158 -104 180 182 0 0 chr3 21564243 21564276 -205960302 - L2 LINE L2 0 3313 3281 599 229 76 0 chr3 21564336 21564493 -205960085 + MIR SINE MIR 83 251 -11 253 347 41 37 chr3 21564512 21564757 -205959821 - L2 LINE L2 -183 3089 2844 584 311 70 25 chr3 21566973 21567217 -205957361 + MIR SINE MIR 7 261 -1 189 325 75 33 chr3 21567480 21567600 -205956978 + L2 LINE L2 3147 3271 -1 476 253 142 0 chr3 21570445 21570607 -205953971 + MIR SINE MIR 47 231 -31 587 221 39 61 chr3 21570849 21571030 -205953548 + AluJb SINE Alu 136 312 0 5411 194 193 6 chr3 21575243 21576652 -205947926 - L1PBa LINE L1 -5185 1678 6 2220 101 0 3 chr3 21576708 21576994 -205947584 + AluSg SINE Alu 1 285 -25 203 0 0 36 chr3 21576994 21577022 -205947556 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 406 218 65 24 chr3 21577066 21577190 -205947388 - L1 LINE L1 -1527 4619 4491 721 154 0 0 chr3 21577318 21577428 -205947150 + FRAM SINE Alu 49 158 -18 456 310 228 34 chr3 21578321 21578966 -205945612 + L3 LINE CR1 725 1494 -83 1091 231 57 70 chr3 21578988 21579207 -205945371 - L1MC4 LINE L1 0 8042 7822 2116 117 13 17 chr3 21579207 21579507 -205945071 + AluSx SINE Alu 1 299 -13 1091 231 57 70 chr3 21579507 21579745 -205944833 - L1MC4 LINE L1 -220 7822 7591 1259 159 0 87 chr3 21579745 21579785 -205944793 - AluJb SINE Alu 0 312 270 351 0 0 0 chr3 21579785 21579824 -205944754 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1259 159 0 87 chr3 21579824 21580060 -205944518 - AluJb SINE Alu -42 270 60 415 210 216 6 chr3 21580194 21580356 -205944222 - L1MC4a LINE L1 -490 7318 7123 729 172 0 0 chr3 21580632 21581124 -205943454 + (CAG)n Simple_repeat Simple_repeat 1 492 0 324 161 0 0 chr3 21581137 21581218 -205943360 + (CAG)n Simple_repeat Simple_repeat 2 82 0 411 337 12 0 chr3 21581428 21581600 -205942978 + (CCCCAG)n Simple_repeat Simple_repeat 6 179 0 331 283 157 25 chr3 21581892 21582090 -205942488 - L1ME LINE L1 -381 5789 5566 319 240 32 88 chr3 21582622 21582747 -205941831 - L1ME3A LINE L1 -24 6146 6029 198 306 0 0 chr3 21583139 21583188 -205941390 - L2 LINE L2 -77 3195 3147 519 240 25 0 chr3 21583753 21583874 -205940704 + MIR SINE MIR 8 131 -131 2756 104 43 10 chr3 21583882 21584296 -205940282 - MER57B LTR ERV1 -6 428 1 948 111 30 1 chr3 21584296 21584522 -205940056 - MER57B-int LTR ERV1 0 7537 7278 591 198 16 8 chr3 21584524 21584650 -205939928 - LTR54B LTR ERV1 -369 129 3 10986 120 58 3 chr3 21584650 21586394 -205938184 - MER57-int LTR ERV1 -390 7147 5307 372 185 0 0 chr3 21586385 21586450 -205938128 - MER57-int LTR ERV1 -1879 4719 4655 * 34935 46 3 0 chr3 21586450 21590655 -205933923 + L1P LINE L1 1 4217 -1929 236 247 130 13 chr3 21590962 21591039 -205933539 - MER58C DNA MER1_type -57 158 73 190 309 72 52 chr3 21591256 21591450 -205933128 - L2 LINE L2 -90 3182 2985 901 214 132 14 chr3 21591770 21592059 -205932519 + MER33 DNA MER1_type 1 323 -1 499 218 74 50 chr3 21592401 21592603 -205931975 + MIR SINE MIR 8 214 -48 262 257 14 0 chr3 21593863 21593937 -205930641 + MIR SINE MIR 50 124 -138 1487 161 57 0 chr3 21593938 21594186 -205930392 + MER47A DNA MER2_type 1 262 -104 640 78 0 68 chr3 21594188 21594291 -205930287 + L1MB3 LINE L1 5836 5931 -252 486 148 28 74 chr3 21594299 21594407 -205930171 + MER47A DNA MER2_type 264 366 0 3493 162 52 12 chr3 21594733 21594931 -205929647 + L1MB3 LINE L1 5444 5633 -550 216 0 0 0 chr3 21594931 21594955 -205929623 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 3493 162 52 12 chr3 21594955 21595448 -205929130 + L1MB3 LINE L1 5633 6163 -20 217 141 77 0 chr3 21595449 21595558 -205929020 + (TA)n Simple_repeat Simple_repeat 1 117 0 201 239 26 53 chr3 21596020 21596133 -205928445 + T-rich Low_complexity Low_complexity 5 114 0 855 121 23 75 chr3 21596155 21596205 -205928373 - L1MB4 LINE L1 -1 6179 6128 2561 41 0 3 chr3 21596205 21596500 -205928078 - AluY SINE Alu -17 294 1 855 121 23 75 chr3 21596500 21596623 -205927955 - L1MB4 LINE L1 -52 6128 6015 205 367 28 0 chr3 21598486 21598595 -205925983 + MIR SINE MIR 136 247 -15 1084 162 66 5 chr3 21599585 21599783 -205924795 + L1MD3 LINE L1 7649 7858 -137 7222 205 51 16 chr3 21600068 21602735 -205921843 + L1MB5 LINE L1 3371 6131 -43 1604 103 0 30 chr3 21602841 21603075 -205921503 + AluSg/x SINE Alu 82 308 -2 195 365 0 0 chr3 21603688 21603751 -205920827 + MIR SINE MIR 171 233 -29 341 288 73 89 chr3 21604048 21604350 -205920228 + L2 LINE L2 2967 3263 -9 198 333 25 0 chr3 21604735 21604816 -205919762 + L2 LINE L2 2128 2210 -1104 411 224 19 28 chr3 21604862 21604969 -205919609 + L1MC5 LINE L1 7705 7810 -151 423 280 126 16 chr3 21605925 21606107 -205918471 - MIR SINE MIR -14 248 47 204 214 0 0 chr3 21606516 21606558 -205918020 + L2 LINE L2 3019 3060 -212 193 245 19 0 chr3 21606907 21606960 -205917618 + MIR SINE MIR 59 112 -150 230 257 14 14 chr3 21607529 21607599 -205916979 - MIR SINE MIR -19 243 174 488 234 35 35 chr3 21607983 21608124 -205916454 + L1MC4 LINE L1 6726 6866 -1176 689 242 130 71 chr3 21608251 21608786 -205915792 + L1MC4 LINE L1 7347 8042 0 349 237 13 112 chr3 21608961 21609113 -205915465 - MIR3 SINE MIR -69 139 3 1773 117 86 0 chr3 21610479 21610736 -205913842 + AluSx SINE Alu 1 279 -33 232 67 0 44 chr3 21610739 21610784 -205913794 + (CGGGA)n Simple_repeat Simple_repeat 3 45 0 191 301 34 55 chr3 21611331 21611477 -205913101 - L2 LINE L2 -306 2966 2824 383 246 66 25 chr3 21611507 21611629 -205912949 + MIR SINE MIR 16 142 -66 23 78 0 0 chr3 21612654 21612705 -205911873 + AT_rich Low_complexity Low_complexity 1 51 0 25 0 0 0 chr3 21612866 21612891 -205911687 + AT_rich Low_complexity Low_complexity 1 25 0 258 304 0 0 chr3 21613532 21613611 -205910967 + L1ME4a LINE L1 5735 5813 -308 373 240 10 20 chr3 21613685 21613785 -205910793 + L1ME4a LINE L1 5959 6057 -64 513 227 93 138 chr3 21613947 21614519 -205910059 + L2 LINE L2 2737 3313 0 191 308 181 8 chr3 21614954 21615087 -205909491 - MIR SINE MIR -54 208 53 180 233 0 0 chr3 21615461 21615504 -205909074 + L2 LINE L2 3271 3313 0 1995 111 59 0 chr3 21615736 21616025 -205908553 + AluSx SINE Alu 1 306 -6 1077 188 8 2 chr3 21616036 21616301 -205908277 - MER2 DNA MER2_type 0 345 32 1115 317 149 5 chr3 21616312 21617032 -205907546 - L2 LINE L2 -228 3044 2225 327 215 94 68 chr3 21618131 21618322 -205906256 - L2 LINE L2 0 3313 3118 588 216 205 24 chr3 21618421 21618675 -205905903 + L2 LINE L2 3014 3313 0 186 250 184 13 chr3 21618805 21618881 -205905697 + L2 LINE L2 3116 3204 -68 2328 104 7 0 chr3 21619197 21619505 -205905073 - AluSx SINE Alu -2 310 1 401 285 106 24 chr3 21619524 21619731 -205904847 - MIR SINE MIR -16 246 23 1145 120 0 63 chr3 21619745 21619936 -205904642 - AluJb SINE Alu 0 312 134 788 160 53 0 chr3 21620243 21620412 -205904166 - MIR SINE MIR -5 257 80 848 129 0 38 chr3 21620990 21621122 -205903456 + FLAM_C SINE Alu 1 127 -16 761 241 93 21 chr3 21621577 21621813 -205902765 - MIR SINE MIR 0 262 10 385 299 74 28 chr3 21623061 21623278 -205901300 + MIR SINE MIR 2 228 -34 2474 175 103 34 chr3 21623296 21623390 -205901188 - Charlie1 DNA MER1_type -70 2691 2605 2781 0 0 10 chr3 21623390 21623688 -205900890 + AluYa5 SINE Alu 1 295 -16 2169 129 0 3 chr3 21623691 21623986 -205900592 + AluSq SINE Alu 1 294 -19 2052 124 0 3 chr3 21623986 21624299 -205900279 + AluSx SINE Alu 1 312 0 2474 175 103 34 chr3 21624299 21624837 -205899741 - Charlie1 DNA MER1_type -156 2605 2009 1769 116 101 0 chr3 21624837 21625104 -205899474 - AluSg SINE Alu -16 294 1 632 276 36 14 chr3 21625159 21625380 -205899198 + MIR SINE MIR 9 234 -28 26 64 0 0 chr3 21625505 21625552 -205899026 + AT_rich Low_complexity Low_complexity 1 47 0 427 205 94 82 chr3 21625669 21625840 -205898738 + MER104 DNA Tc2 8 180 0 754 207 72 16 chr3 21627012 21627205 -205897373 + MER3 DNA MER1_type 2 205 -4 406 281 30 12 chr3 21627569 21627736 -205896842 - L1MC4a LINE L1 -1969 5839 5670 * 5936 66 9 0 chr3 21627726 21628481 -205896097 - L1PA7 LINE L1 -1 6153 5392 184 263 79 26 chr3 21628593 21628669 -205895909 + MIR SINE MIR 45 124 -138 668 196 67 62 chr3 21628721 21628866 -205895712 + MIR SINE MIR 63 211 -51 2037 149 7 0 chr3 21628866 21629168 -205895410 + AluSx SINE Alu 1 304 -8 668 196 67 62 chr3 21629168 21629216 -205895362 + MIR SINE MIR 211 257 -5 2385 85 0 10 chr3 21629241 21629548 -205895030 + AluSx SINE Alu 1 304 -8 231 188 62 0 chr3 21631086 21631166 -205893412 + (TTAA)n Simple_repeat Simple_repeat 4 88 0 8298 57 1 0 chr3 21631621 21632586 -205891992 + LTR5 LTR ERVK 1 966 -3 354 355 39 17 chr3 21632953 21633187 -205891391 - MIR SINE MIR -1 261 23 974 153 0 0 chr3 21633223 21633367 -205891211 + AluJb SINE Alu 157 300 -12 2875 219 95 7 chr3 21634676 21635412 -205889166 - L1M4 LINE L1 -1253 4893 4093 268 232 0 14 chr3 21635407 21635476 -205889102 - L1MEc LINE L1 -6307 89 22 * 1076 167 23 11 chr3 21635618 21635792 -205888786 - AluJo SINE Alu -134 178 3 506 267 73 53 chr3 21635795 21635929 -205888649 - L1M4 LINE L1 -1488 4658 4528 2410 97 49 6 chr3 21635929 21636278 -205888300 + THE1B LTR MaLR 1 364 0 506 267 73 53 chr3 21636278 21636446 -205888132 - L1M4 LINE L1 -1618 4528 4350 251 354 20 14 chr3 21636865 21637012 -205887566 - L2 LINE L2 -191 3081 2934 1567 189 29 0 chr3 21637065 21637377 -205887201 + MER33 DNA MER1_type 1 321 -3 1066 149 0 12 chr3 21637482 21637650 -205886928 + FRAM SINE Alu 1 166 -10 2227 130 0 0 chr3 21637651 21637958 -205886620 + AluSx SINE Alu 1 307 -5 25 31 0 0 chr3 21638046 21638078 -205886500 + AT_rich Low_complexity Low_complexity 1 32 0 1679 174 0 37 chr3 21638574 21638895 -205885683 - AluJb SINE Alu -3 309 1 3350 198 25 14 chr3 21639776 21640416 -205884162 - MER82 DNA MER2_type -6 647 1 1971 151 20 0 chr3 21640759 21641063 -205883515 + AluSx SINE Alu 1 310 -2 240 86 0 0 chr3 21641839 21641874 -205882704 + (TG)n Simple_repeat Simple_repeat 2 36 0 1664 174 14 0 chr3 21642578 21642854 -205881724 - AluJo SINE Alu -32 280 1 338 259 27 9 chr3 21642878 21642990 -205881588 - MIR SINE MIR -18 244 131 3045 91 43 0 chr3 21642990 21643406 -205881172 + MER57B LTR ERV1 1 434 0 4076 141 47 5 chr3 21643406 21644051 -205880527 + MER57B-int LTR ERV1 1 672 -6865 * 6199 171 89 45 chr3 21644048 21646684 -205877894 + MER51-int LTR ERV1 288 4651 -2738 2543 77 0 6 chr3 21646684 21646995 -205877583 + AluSc SINE Alu 1 309 0 6199 171 89 45 chr3 21646995 21647527 -205877051 + MER51-int LTR ERV1 4651 5158 -2231 1463 46 5 36 chr3 21647530 21647724 -205876854 - L1PA4 LINE L1 0 6155 5968 1891 155 7 0 chr3 21647840 21648124 -205876454 - AluSx SINE Alu -26 286 1 453 83 67 0 chr3 21648124 21648201 -205876377 - L1M LINE L1 -822 5324 5252 1214 41 0 0 chr3 21648267 21648412 -205876166 + L1PA4 LINE L1 6010 6154 -1 2331 101 3 0 chr3 21648838 21649134 -205875444 + AluSx SINE Alu 1 297 -15 686 231 17 52 chr3 21649144 21649317 -205875261 + AluJo SINE Alu 2 168 -144 29729 106 16 13 chr3 21649418 21653922 -205870656 - L1P LINE L1 -1032 5114 598 308 315 72 9 chr3 21654055 21654166 -205870412 + L2 LINE L2 3191 3308 -5 234 0 0 0 chr3 21654359 21654385 -205870193 + (T)n Simple_repeat Simple_repeat 1 26 0 1039 237 107 13 chr3 21654675 21654975 -205869603 - MLT1J2 LTR MaLR -122 328 1 21 0 0 0 chr3 21655035 21655056 -205869522 + AT_rich Low_complexity Low_complexity 1 21 0 2444 75 3 16 chr3 21655532 21655838 -205868740 - AluY SINE Alu -9 302 1 326 106 47 4 chr3 21656235 21656317 -205868261 - MER53 DNA DNA -73 116 1 458 249 46 69 chr3 21657069 21657230 -205867348 - MLT1J2 LTR MaLR -40 471 252 602 271 48 5 chr3 21657255 21657443 -205867135 - MLT1J1 LTR MaLR -250 196 1 188 313 0 16 chr3 21658070 21658134 -205866444 - L2 LINE L2 -5 3267 3205 2307 107 7 0 chr3 21658160 21658458 -205866120 + AluSx SINE Alu 1 300 -12 725 179 0 0 chr3 21660437 21660549 -205864029 + FLAM_A SINE Alu 4 115 -18 683 286 112 9 chr3 21660811 21661035 -205863543 - MLT1K LTR MaLR -318 270 24 310 337 53 16 chr3 21662481 21662671 -205861907 - L2 LINE L2 -255 3058 2862 207 324 57 29 chr3 21662704 21662809 -205861769 - MIR3 SINE MIR -54 154 47 194 280 72 40 chr3 21663054 21663179 -205861399 + MIR SINE MIR 24 152 -56 370 254 87 22 chr3 21663711 21663849 -205860729 + MIR SINE MIR 20 166 -96 1127 126 0 18 chr3 21665008 21665216 -205859362 - AluSq SINE Alu 0 326 122 2359 78 0 41 chr3 21665221 21665541 -205859037 - AluSg SINE Alu -2 308 2 1528 127 124 0 chr3 21665543 21665810 -205858768 - AluSp SINE Alu -13 300 1 590 111 40 10 chr3 21666192 21666291 -205858287 - L1MB2 LINE L1 -2 6169 6068 552 283 148 0 chr3 21666593 21666823 -205857755 + L2 LINE L2 2712 2975 -339 271 301 36 0 chr3 21666830 21666913 -205857665 + MER5B DNA MER1_type 19 104 -74 192 97 0 0 chr3 21716975 21717006 -205807572 + (ATG)n Simple_repeat Simple_repeat 3 33 0 457 256 135 88 chr3 21717367 21717877 -205806701 + L2 LINE L2 2727 3267 -5 1068 98 0 0 chr3 21718426 21718569 -205806009 - AluY SINE Alu -4 307 165 466 291 64 7 chr3 21718634 21718775 -205805803 + L2 LINE L2 3122 3270 -2 228 250 11 33 chr3 21718877 21718969 -205805609 + MLT1K LTR MaLR 449 538 -50 446 173 45 116 chr3 21718970 21719147 -205805431 + L1ME2 LINE L1 5669 5831 -333 650 245 15 56 chr3 21719147 21719343 -205805235 + MLT1B LTR MaLR 1 188 -186 202 200 0 0 chr3 21719344 21719379 -205805199 + C-rich Low_complexity Low_complexity 2 36 0 876 226 20 5 chr3 21719390 21719589 -205804989 + MLT1B LTR MaLR 189 390 0 1346 93 21 10 chr3 21719687 21719735 -205804843 - MER107 DNA MER1_type -1 196 150 237 65 0 0 chr3 21719735 21719766 -205804812 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1346 93 21 10 chr3 21719766 21719911 -205804667 - MER107 DNA MER1_type -47 150 1 1910 318 78 36 chr3 21719919 21720585 -205803993 - LTR8A LTR ERV1 0 727 34 620 261 40 22 chr3 21720591 21720616 -205803962 + L1ME2 LINE L1 5927 5950 -214 2463 53 0 0 chr3 21720616 21720923 -205803655 + AluY SINE Alu 1 307 0 620 261 40 22 chr3 21720923 21721122 -205803456 + L1ME2 LINE L1 5950 6156 -8 493 290 12 0 chr3 21721367 21721529 -205803049 + GA-rich Low_complexity Low_complexity 2 165 0 321 259 0 0 chr3 21722995 21723076 -205801502 + MIR SINE MIR 55 135 -127 221 221 10 0 chr3 21723504 21723608 -205800970 + (TG)n Simple_repeat Simple_repeat 2 106 0 299 126 35 11 chr3 21723788 21723875 -205800703 + (TG)n Simple_repeat Simple_repeat 2 90 0 210 277 12 0 chr3 21723894 21723977 -205800601 + (TG)n Simple_repeat Simple_repeat 2 85 0 2537 244 170 5 chr3 21724112 21724948 -205799630 - L1MDa LINE L1 -5341 1199 226 831 92 9 0 chr3 21725278 21725387 -205799191 + FRAM SINE Alu 50 159 -17 211 292 28 0 chr3 21725663 21725735 -205798843 - L2 LINE L2 -291 2981 2908 2051 172 7 63 chr3 21725853 21726265 -205798313 - MLT1B LTR MaLR -1 389 1 207 337 109 11 chr3 21726271 21726446 -205798132 - L2 LINE L2 -579 2735 2544 340 206 76 0 chr3 21726626 21726718 -205797860 + L1MDa LINE L1 1646 1744 -4796 285 300 3 10 chr3 21726801 21726934 -205797644 - L1P LINE L1 -2471 3675 3543 2887 182 30 17 chr3 21726992 21727591 -205796987 - L1ME1 LINE L1 -93 6073 5467 209 284 136 12 chr3 21728404 21728485 -205796093 - MIR SINE MIR -102 106 16 247 186 0 68 chr3 21728758 21728817 -205795761 - L2 LINE L2 -2 3270 3216 301 280 42 51 chr3 21728872 21728990 -205795588 + MIR SINE MIR 135 251 -11 423 278 161 22 chr3 21729080 21729260 -205795318 + MIR SINE MIR 2 206 -56 410 297 11 0 chr3 21729450 21729625 -205794953 + (TG)n Simple_repeat Simple_repeat 2 178 0 261 0 0 0 chr3 21729652 21729681 -205794897 + (TG)n Simple_repeat Simple_repeat 1 29 0 197 250 0 0 chr3 21729713 21729753 -205794825 + MIR SINE MIR 222 261 -1 1297 226 83 92 chr3 21729787 21730450 -205794128 - L1ME3 LINE L1 0 6162 5506 628 294 78 36 chr3 21730462 21730819 -205793759 - LTR16A LTR ERVL -3 447 76 559 224 59 46 chr3 21730847 21731008 -205793570 - L1ME3 LINE L1 -694 5470 5299 1828 167 3 22 chr3 21731008 21731319 -205793259 - AluJb SINE Alu -7 305 1 559 224 59 46 chr3 21731319 21731412 -205793166 - L1ME3 LINE L1 -865 5299 5209 2353 286 62 26 chr3 21731417 21732429 -205792149 - L1ME3 LINE L1 -1052 5094 4035 180 0 0 0 chr3 21732429 21732449 -205792129 + (TG)n Simple_repeat Simple_repeat 1 20 0 2353 286 62 26 chr3 21732449 21732589 -205791989 - L1ME3 LINE L1 -2111 4035 3901 1176 264 82 9 chr3 21733559 21733900 -205790678 - MLT1K LTR MaLR -8 580 215 635 285 131 23 chr3 21734328 21734873 -205789705 - L2 LINE L2 -236 3036 2388 281 267 103 27 chr3 21734954 21735100 -205789478 - L1ME4a LINE L1 -232 5889 5733 703 146 18 0 chr3 21736724 21736834 -205787744 - AluJb SINE Alu -11 301 190 3899 132 37 55 chr3 21736837 21737562 -205787016 - MER50 LTR ERV1 -22 712 1 806 154 19 39 chr3 21737562 21737718 -205786860 - AluJb SINE Alu -122 190 38 268 256 78 56 chr3 21737718 21737808 -205786770 + L2 LINE L2 2995 3086 -186 2474 104 109 3 chr3 21738091 21738477 -205786101 + MSTA LTR MaLR 2 428 0 867 239 132 31 chr3 21738729 21739182 -205785396 + MLT1G1 LTR MaLR 10 595 0 281 252 48 48 chr3 21739330 21739433 -205785145 + L1ME LINE L1 5541 5643 -521 1499 208 17 7 chr3 21739889 21740178 -205784400 + AluJo SINE Alu 9 300 -12 242 289 0 78 chr3 21740850 21740940 -205783638 - MIR3 SINE MIR -44 164 82 200 286 36 36 chr3 21741357 21741441 -205783137 - MIR SINE MIR -71 191 108 524 293 62 5 chr3 21741522 21741785 -205782793 - L1ME3A LINE L1 -168 6002 5724 380 233 118 21 chr3 21742206 21742394 -205782184 + MIR SINE MIR 27 243 -19 333 0 0 0 chr3 21742510 21742547 -205782031 + (TG)n Simple_repeat Simple_repeat 2 38 0 2192 150 40 6 chr3 21742739 21743092 -205781486 + MLT1A1 LTR MaLR 1 365 0 3738 219 51 47 chr3 21743377 21744540 -205780038 - L1MD2 LINE L1 -12 6347 5170 1893 149 7 7 chr3 21744540 21744835 -205779743 - AluJo SINE Alu -17 295 1 3738 219 51 47 chr3 21744835 21744885 -205779693 - L1MD2 LINE L1 -1189 5170 5122 370 310 223 13 chr3 21744895 21745285 -205779293 - L1MC4a LINE L1 -1918 5890 5419 2059 110 13 41 chr3 21745308 21745491 -205779087 - AluSx SINE Alu -3 309 137 2250 109 3 10 chr3 21745491 21745802 -205778776 - AluSc SINE Alu 0 309 1 2059 110 13 41 chr3 21745802 21745935 -205778643 - AluSx SINE Alu -175 137 2 335 215 15 0 chr3 21746161 21746226 -205778352 + MIR SINE MIR 119 184 -78 442 138 0 0 chr3 21746235 21746300 -205778278 - AluJb SINE Alu -23 289 225 3024 55 23 39 chr3 21746300 21746738 -205777840 - LTR7 LTR ERV1 -19 431 1 1341 161 4 48 chr3 21746742 21746791 -205777787 - AluJb SINE Alu -75 237 187 5491 167 15 68 chr3 21746791 21747815 -205776763 + LTR5 LTR ERVK 1 969 0 1341 161 4 48 chr3 21747815 21748013 -205776565 - AluJb SINE Alu -125 187 1 250 167 19 37 chr3 21748024 21748078 -205776500 + MIR SINE MIR 189 241 -21 2995 138 34 19 chr3 21748348 21748819 -205775759 - MER66A LTR ERV1 0 478 1 852 262 87 0 chr3 21749149 21749355 -205775223 + MIR SINE MIR 20 243 -19 289 289 22 0 chr3 21749404 21749494 -205775084 + L2 LINE L2 2931 3022 -250 370 305 51 0 chr3 21749584 21749702 -205774876 + MIR3 SINE MIR 9 132 -76 448 189 101 162 chr3 21750174 21750502 -205774076 - MLT1K LTR MaLR -74 514 207 1841 109 40 4 chr3 21750986 21751262 -205773316 - L1PB3 LINE L1 -2 6152 5867 370 312 79 37 chr3 21751276 21751465 -205773113 - MIR SINE MIR -5 257 61 351 270 20 0 chr3 21752024 21752124 -205772454 - MIR SINE MIR -65 143 42 891 138 0 0 chr3 21752237 21752360 -205772218 - FLAM_C SINE Alu -20 123 1 191 224 119 45 chr3 21752634 21752701 -205771877 + L3 LINE CR1 1370 1441 -136 418 222 16 48 chr3 21752795 21752921 -205771657 + MER5A DNA MER1_type 44 165 -24 377 301 68 8 chr3 21753786 21753919 -205770659 - MIR3 SINE MIR -31 177 37 278 256 33 0 chr3 21754015 21754105 -205770473 - MER117 DNA MER1_type -104 93 1 343 235 20 31 chr3 21754472 21754570 -205770008 + MIR SINE MIR 14 110 -152 499 264 93 16 chr3 21754640 21754822 -205769756 - MLT1L LTR MaLR 0 615 420 2367 143 133 11 chr3 21754928 21755370 -205769208 + MLT2B3 LTR ERVL 1 496 -58 313 200 36 91 chr3 21755365 21755475 -205769103 + MLT1H LTR MaLR 446 549 0 * 2514 152 36 10 chr3 21755554 21755969 -205768609 + MSTB LTR MaLR 1 426 0 442 277 8 8 chr3 21756293 21756423 -205768155 + LTR67 LTR ERVL 428 557 0 597 260 91 0 chr3 21756429 21756583 -205767995 + MIR SINE MIR 93 260 -2 186 43 0 0 chr3 21756730 21756753 -205767825 + (ATG)n Simple_repeat Simple_repeat 3 25 0 195 69 0 0 chr3 21756787 21756816 -205767762 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 273 273 13 13 chr3 21756819 21756896 -205767682 - MIR SINE MIR -35 227 151 772 145 28 35 chr3 21756960 21757105 -205767473 + MLT2B3 LTR ERVL 137 280 -274 501 269 17 8 chr3 21757111 21757230 -205767348 - MIR SINE MIR -118 144 25 251 370 0 0 chr3 21757736 21757828 -205766750 - MIR SINE MIR -72 136 45 21 36 0 0 chr3 21757919 21757947 -205766631 + AT_rich Low_complexity Low_complexity 1 28 0 4606 218 78 43 chr3 21758064 21761928 -205762650 - L1M4 LINE L1 -2598 4046 10 561 263 6 29 chr3 21762707 21762878 -205761700 + LTR16C LTR ERVL 36 202 -289 509 242 73 0 chr3 21762936 21763101 -205761477 + LTR16C LTR ERVL 313 489 -2 2174 167 27 15 chr3 21763353 21763760 -205760818 + LTR3 LTR ERVK 5 416 -16 4541 114 36 15 chr3 21763785 21764515 -205760063 + HERVK3 LTR ERVK 30 774 -6469 9101 114 11 5 chr3 21764521 21765901 -205758677 + HERVK3 LTR ERVK 1358 2745 -4498 3592 131 2 7 chr3 21765889 21766455 -205758123 + HERVK3 LTR ERVK 3745 4307 -2936 * 4020 130 21 0 chr3 21766454 21767114 -205757464 + HERVK3 LTR ERVK 4685 5358 -1885 * 7048 101 0 1 chr3 21767109 21768090 -205756488 + HERVK3 LTR ERVK 6264 7243 0 2112 175 49 15 chr3 21768094 21768505 -205756073 + LTR3 LTR ERVK 5 429 -3 257 154 0 0 chr3 21768515 21768554 -205756024 + HERVK3 LTR ERVK 2 40 -7203 241 384 10 10 chr3 21768560 21768659 -205755919 + L2 LINE L2 2961 3059 -213 2733 273 138 24 chr3 21768966 21770402 -205754176 + L2 LINE L2 1710 3308 -5 291 272 272 0 chr3 21770646 21770771 -205753807 + MIR3 SINE MIR 42 200 -8 309 317 49 0 chr3 21771253 21771376 -205753202 + L3 LINE CR1 1376 1504 -73 1935 141 3 7 chr3 21771391 21771789 -205752789 + AluSx SINE Alu 1 397 0 180 321 38 0 chr3 21771800 21771853 -205752725 + L2 LINE L2 3170 3224 -48 423 359 39 9 chr3 21773038 21773269 -205751309 - L2 LINE L2 -459 2855 2618 818 252 172 54 chr3 21773289 21773807 -205750771 - L2 LINE L2 0 3313 2715 1280 173 13 18 chr3 21773807 21774032 -205750546 + MER58A DNA MER1_type 1 224 0 818 252 172 54 chr3 21774032 21774077 -205750501 - L2 LINE L2 -598 2715 2677 373 301 49 0 chr3 21774855 21774978 -205749600 - L2 LINE L2 -9 3304 3176 185 260 20 20 chr3 21775090 21775140 -205749438 - MIR SINE MIR -184 78 29 258 265 0 29 chr3 21775160 21775228 -205749350 + L3 LINE CR1 1315 1380 -197 1090 286 10 13 chr3 21775280 21775584 -205748994 - MLT1K LTR MaLR -116 472 170 247 294 135 24 chr3 21775736 21775862 -205748716 + MIR SINE MIR 49 188 -74 947 233 72 4 chr3 21776164 21776426 -205748152 + MLT2C1 LTR ERVL 118 397 0 506 252 97 53 chr3 21776427 21776566 -205748012 + ERVL-C1 LTR ERVL 2 154 -5610 2209 155 9 6 chr3 21776566 21776902 -205747676 - MER1B DNA MER1_type 0 337 1 506 252 97 53 chr3 21776902 21776968 -205747610 + ERVL-C1 LTR ERVL 154 216 -5548 3068 170 97 2 chr3 21776970 21777576 -205747002 + ERVL-C1 LTR ERVL 5093 5756 -8 1208 221 39 66 chr3 21777576 21777983 -205746595 + MLT2C1 LTR ERVL 1 396 -1 4184 235 55 21 chr3 21777984 21779310 -205745268 - L1MDa LINE L1 -2536 4004 2606 2200 60 45 0 chr3 21779310 21779607 -205744971 - AluY SINE Alu 0 309 1 4184 235 55 21 chr3 21779607 21779768 -205744810 - L1MDa LINE L1 -3934 2606 2452 304 28 0 0 chr3 21780702 21780738 -205743840 + MER4A LTR ERV1 554 589 -75 2133 113 10 0 chr3 21781940 21782233 -205742345 - AluSx SINE Alu -16 296 1 386 239 215 23 chr3 21783313 21783443 -205741135 + MIR SINE MIR 3 157 -105 505 236 90 28 chr3 21783454 21783632 -205740946 - MER117 DNA MER1_type -6 191 3 189 222 0 0 chr3 21783648 21783684 -205740894 + L2 LINE L2 3217 3252 -20 * 508 264 135 7 chr3 21783680 21783828 -205740750 - L3 LINE CR1 -36 1541 1375 249 83 0 0 chr3 21784047 21784083 -205740495 + (TG)n Simple_repeat Simple_repeat 2 37 0 368 281 73 0 chr3 21784946 21785042 -205739536 + MER91B DNA MER1_type 85 187 -3 829 271 146 10 chr3 21785513 21785947 -205738631 + L2 LINE L2 2754 3254 -59 195 300 50 0 chr3 21786341 21786401 -205738177 + L3 LINE CR1 1416 1478 -99 9076 122 21 18 chr3 21786645 21787399 -205737179 + Tigger1 DNA MER2_type 1 765 -1653 2172 113 3 0 chr3 21787399 21787715 -205736863 - AluSx SINE Alu 0 317 1 9076 122 21 18 chr3 21787715 21788436 -205736142 + Tigger1 DNA MER2_type 765 1482 -936 6161 93 148 133 chr3 21788436 21790109 -205734469 + pTR5 LTR ERV1 743 2438 0 5289 112 20 75 chr3 21790112 21790691 -205733887 + Tigger1 DNA MER2_type 1479 1982 -436 2242 120 3 0 chr3 21790691 21790992 -205733586 - AluSc SINE Alu -6 303 2 5289 112 20 75 chr3 21790992 21791407 -205733171 + Tigger1 DNA MER2_type 1982 2418 0 335 219 133 19 chr3 21791407 21791512 -205733066 - MIR SINE MIR -30 232 116 2524 229 122 82 chr3 21791512 21792322 -205732256 + MER69B DNA AcHobo 1 871 -1655 351 44 0 0 chr3 21792322 21792367 -205732211 + (TG)n Simple_repeat Simple_repeat 2 46 0 2524 229 122 82 chr3 21792367 21792698 -205731880 + MER69B DNA AcHobo 871 1187 -39 182 258 74 61 chr3 21792845 21793008 -205731570 - L2 LINE L2 -681 2633 2469 361 281 148 0 chr3 21793589 21793717 -205730861 - MIR SINE MIR 0 262 116 389 262 136 22 chr3 21793801 21794027 -205730551 - MIR SINE MIR -15 247 7 987 204 38 8 chr3 21795195 21795435 -205729143 - L1MC1 LINE L1 -83 6250 6004 528 266 35 55 chr3 21795647 21795700 -205728878 - MIR SINE MIR -6 256 203 1762 149 28 14 chr3 21795700 21795989 -205728589 - AluJo SINE Alu -16 296 4 528 266 35 55 chr3 21795989 21796134 -205728444 - MIR SINE MIR -59 203 62 333 271 52 0 chr3 21796578 21796674 -205727904 - MER91C DNA MER1_type -2 138 38 247 312 46 28 chr3 21796706 21796815 -205727763 - MIR SINE MIR -63 145 35 284 346 44 6 chr3 21797143 21797325 -205727253 - L1MC1 LINE L1 -1983 5825 5637 861 280 111 29 chr3 21797919 21798362 -205726216 - L2 LINE L2 -5 3308 2830 216 282 209 0 chr3 21799277 21799387 -205725191 + L2 LINE L2 3138 3270 -2 212 315 67 0 chr3 21799538 21799627 -205724951 - MIR SINE MIR -147 115 21 324 313 9 9 chr3 21800308 21800420 -205724158 + MIR SINE MIR 80 191 -71 2001 140 10 16 chr3 21800488 21800796 -205723782 - AluJo SINE Alu -6 306 1 646 278 11 0 chr3 21800929 21801109 -205723469 - L1MC1 LINE L1 -912 5234 5053 248 247 80 12 chr3 21801270 21801397 -205723181 + L1ME3 LINE L1 5791 5933 -233 292 167 106 0 chr3 21801450 21801516 -205723062 + L1ME3 LINE L1 6024 6096 -66 1409 240 66 33 chr3 21801678 21802165 -205722413 + MER90 LTR ERV1 1 503 -72 494 226 76 45 chr3 21802201 21802541 -205722037 + LTR23 LTR ERV1 4 378 -59 319 286 108 31 chr3 21803508 21803795 -205720783 + L2 LINE L2 2007 2315 -999 263 262 81 7 chr3 21803869 21804018 -205720560 - LTR16A1 LTR ERVL -89 368 209 184 350 0 52 chr3 21804270 21804367 -205720211 - L2 LINE L2 -62 3210 3119 180 313 45 0 chr3 21804514 21804626 -205719952 - L2 LINE L2 -265 3007 2891 963 254 29 32 chr3 21804659 21804919 -205719659 + MER113 DNA MER1_type? 53 313 -208 5168 126 51 5 chr3 21804919 21805675 -205718903 + L1MC1 LINE L1 5450 6250 -83 2691 129 19 2 chr3 21805675 21806094 -205718484 - MSTA LTR MaLR -2 426 1 5168 126 51 5 chr3 21806094 21806181 -205718397 + L1MC1 LINE L1 6250 6332 -1 963 254 29 32 chr3 21806181 21806235 -205718343 + MER113 DNA MER1_type? 313 366 -155 901 95 0 0 chr3 21806486 21806612 -205717966 + L1MC/D LINE L1 5540 5665 -668 398 211 9 0 chr3 21807004 21807113 -205717465 + CT-rich Low_complexity Low_complexity 2 111 0 653 203 0 7 chr3 21807223 21807376 -205717202 + CT-rich Low_complexity Low_complexity 4 155 0 914 270 146 33 chr3 21807578 21808118 -205716460 - L2 LINE L2 -680 2634 2034 275 49 24 0 chr3 21808498 21808539 -205716039 + (CA)n Simple_repeat Simple_repeat 2 43 0 228 224 0 53 chr3 21809035 21809111 -205715467 + L2 LINE L2 2916 2987 -285 441 294 40 0 chr3 21809145 21809271 -205715307 - MER94 DNA DNA -1 133 3 243 114 68 0 chr3 21809282 21809326 -205715252 + L2 LINE L2 3016 3062 -210 1412 222 74 15 chr3 21809472 21809877 -205714701 + MLT1C LTR MaLR 34 462 -5 866 180 40 31 chr3 21809894 21810116 -205714462 - L1MB8 LINE L1 0 6178 5955 1140 247 119 11 chr3 21810118 21810611 -205713967 + LTR48B LTR ERV1 5 585 -59 329 167 0 0 chr3 21810663 21810717 -205713861 + LTR49 LTR ERV1 542 595 0 1930 147 0 0 chr3 21810717 21811031 -205713547 - L1MB8 LINE L1 -218 5960 5647 1653 144 41 0 chr3 21811372 21811643 -205712935 - AluJo SINE Alu -10 302 21 446 323 56 5 chr3 21813160 21813355 -205711223 - MIR SINE MIR -8 254 50 198 203 6 13 chr3 21813425 21813493 -205711085 - L2 LINE L2 -309 3004 2938 * 224 167 21 21 chr3 21813484 21813532 -205711046 + MIR SINE MIR 96 143 -65 231 302 0 31 chr3 21814191 21814287 -205710291 - L2 LINE L2 -215 3057 2965 468 283 17 0 chr3 21814298 21814444 -205710134 + MIR SINE MIR 14 166 -42 809 220 70 5 chr3 21814457 21814643 -205709935 - MER63A DNA MER1_type -10 200 3 353 364 6 6 chr3 21815081 21815243 -205709335 - L2 LINE L2 -528 2786 2625 1571 217 65 5 chr3 21815301 21815670 -205708908 + MLT1J2 LTR MaLR 38 428 -22 707 133 0 0 chr3 21816244 21816349 -205708229 + FLAM_A SINE Alu 25 129 -13 499 211 102 0 chr3 21816378 21816506 -205708072 - MIR SINE MIR -13 249 109 1815 162 0 14 chr3 21817184 21817468 -205707110 + AluJo SINE Alu 1 280 -32 729 0 0 0 chr3 21817468 21817549 -205707029 + (TAAAA)n Simple_repeat Simple_repeat 1 81 0 337 341 51 11 chr3 21817586 21817762 -205706816 + MLT1L LTR MaLR 212 394 -221 332 239 77 34 chr3 21818024 21818141 -205706437 - MLT1K LTR MaLR -300 288 167 227 215 108 15 chr3 21818121 21818186 -205706392 - MLT1K LTR MaLR -333 255 185 * 187 282 154 0 chr3 21818484 21818601 -205705977 + MIR3 SINE MIR 45 179 -29 351 255 177 21 chr3 21818611 21818803 -205705775 + MIR SINE MIR 28 249 -13 384 249 64 20 chr3 21819512 21819666 -205704912 - MIR SINE MIR -61 147 14 592 320 121 0 chr3 21819770 21820051 -205704527 + L2 LINE L2 2956 3270 -2 226 239 0 0 chr3 21820933 21820979 -205703599 - L3 LINE CR1 -640 937 892 274 281 47 31 chr3 21821066 21821194 -205703384 + L2 LINE L2 3119 3248 -24 1250 145 16 57 chr3 21821332 21821580 -205702998 - AluJo SINE Alu -74 238 1 2264 238 46 75 chr3 21821580 21821908 -205702670 + L1ME2 LINE L1 4891 5227 -937 330 26 0 0 chr3 21821908 21821947 -205702631 + (TG)n Simple_repeat Simple_repeat 2 40 0 2264 238 46 75 chr3 21821947 21822012 -205702566 + L1ME2 LINE L1 5227 5292 -872 2339 110 0 0 chr3 21822012 21822320 -205702258 + AluSx SINE Alu 1 308 -4 2264 238 46 75 chr3 21822320 21823030 -205701548 + L1ME2 LINE L1 5292 5967 -197 1916 114 3 42 chr3 21823030 21823345 -205701233 + AluSx SINE Alu 5 308 0 2264 238 46 75 chr3 21823345 21823507 -205701071 + L1ME2 LINE L1 5967 6132 -32 2015 160 0 3 chr3 21823543 21823850 -205700728 - AluJb SINE Alu -6 306 1 37 69 0 0 chr3 21823850 21823922 -205700656 + AT_rich Low_complexity Low_complexity 1 72 0 728 277 141 44 chr3 21824093 21824178 -205700400 - L1ME3 LINE L1 -218 5944 5869 231 114 0 0 chr3 21824178 21824213 -205700365 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 728 277 141 44 chr3 21824213 21824560 -205700018 - L1ME3 LINE L1 -293 5869 5470 576 265 80 26 chr3 21824573 21824837 -205699741 - MER102a DNA MER1_type -1 329 52 794 158 0 0 chr3 21824837 21824970 -205699608 + FLAM_A SINE Alu 1 133 0 1989 156 0 9 chr3 21825382 21825697 -205698881 - AluJb SINE Alu 0 312 1 263 225 42 14 chr3 21825697 21825768 -205698810 + L2 LINE L2 2687 2759 -555 317 365 57 30 chr3 21825823 21826229 -205698349 + L2 LINE L2 2883 3299 -14 222 316 72 36 chr3 21826236 21826375 -205698203 - L2 LINE L2 -27 3245 3102 192 244 139 23 chr3 21826550 21826636 -205697942 + MIR SINE MIR 5 100 -162 3835 153 70 9 chr3 21826707 21827406 -205697172 - Tigger3(Golem) DNA MER2_type -4 3025 2284 497 262 9 0 chr3 21827406 21827513 -205697065 - Tigger3(Golem) DNA MER2_type -2921 108 1 614 238 13 7 chr3 21827514 21827600 -205696978 - MIR SINE MIR -24 238 149 1793 175 0 38 chr3 21827600 21827920 -205696658 - AluJb SINE Alu -2 310 3 614 238 13 7 chr3 21827920 21827984 -205696594 - MIR SINE MIR -113 149 87 227 204 0 0 chr3 21828627 21828643 -205695935 - L2 LINE L2 -1 3312 3264 233 91 0 0 chr3 21828643 21828676 -205695902 - MIR SINE MIR -11 251 219 252 284 84 0 chr3 21828758 21828853 -205695725 + MIR SINE MIR 14 116 -146 239 320 39 0 chr3 21828902 21829005 -205695573 + L2 LINE L2 3004 3110 -162 421 291 64 41 chr3 21829018 21829190 -205695388 - MIR3 SINE MIR -16 192 17 420 285 15 15 chr3 21829207 21829356 -205695222 + MIR SINE MIR 3 150 -58 634 227 68 17 chr3 21829471 21829647 -205694931 + MIR SINE MIR 60 244 -18 267 176 59 12 chr3 21829841 21829926 -205694652 + Charlie7 DNA MER1_type 2450 2538 -74 274 331 84 7 chr3 21830021 21830163 -205694415 - MIR SINE MIR -35 227 75 483 170 0 0 chr3 21830273 21830373 -205694205 + (CA)n Simple_repeat Simple_repeat 2 101 0 228 317 20 20 chr3 21830963 21831064 -205693514 - MIR SINE MIR -62 146 46 259 319 74 7 chr3 21831338 21831473 -205693105 + MIR SINE MIR 16 159 -103 206 226 16 32 chr3 21831746 21831808 -205692770 + MIR SINE MIR 181 241 -21 2158 276 57 7 chr3 21832283 21832990 -205691588 - L1ME3A LINE L1 -5 6165 5424 386 195 153 34 chr3 21833082 21833200 -205691378 - MIR SINE MIR -57 205 74 507 263 131 0 chr3 21833450 21833625 -205690953 - MIR SINE MIR -16 246 49 2962 160 19 14 chr3 21833782 21834370 -205690208 + L1MB7 LINE L1 5592 6182 -2 290 228 0 0 chr3 21834637 21834694 -205689884 - L2 LINE L2 -1 3271 3215 326 260 14 0 chr3 21834797 21834870 -205689708 - L2 LINE L2 -2 3311 3238 582 318 103 9 chr3 21834879 21835102 -205689476 + MIR SINE MIR 18 261 -1 646 211 62 37 chr3 21835325 21835486 -205689092 - FRAM SINE Alu 0 166 2 458 270 46 12 chr3 21835711 21835879 -205688699 - MIR SINE MIR -54 208 33 184 288 51 0 chr3 21836000 21836059 -205688519 + MIR SINE MIR 85 146 -62 640 211 26 37 chr3 21836323 21836513 -205688065 + MER53 DNA DNA 2 189 0 1823 253 111 93 chr3 21837189 21837258 -205687320 - MER45C DNA AcHobo -628 953 887 1936 163 30 0 chr3 21837258 21837559 -205687019 - AluJb SINE Alu -2 310 1 1823 253 111 93 chr3 21837559 21838278 -205686300 - MER45C DNA AcHobo -694 887 182 2135 110 3 0 chr3 21838278 21838560 -205686018 + AluY SINE Alu 1 283 -28 273 98 0 0 chr3 21838560 21838601 -205685977 + (CA)n Simple_repeat Simple_repeat 2 42 0 1753 192 10 0 chr3 21838607 21838899 -205685679 + AluJb SINE Alu 1 295 -17 1823 253 111 93 chr3 21838899 21838990 -205685588 - MER45C DNA AcHobo -1403 178 49 274 273 11 0 chr3 21839025 21839113 -205685465 + L2 LINE L2 2914 3002 -270 214 325 25 69 chr3 21839209 21839369 -205685209 + L2 LINE L2 3158 3310 -3 * 240 309 211 25 chr3 21839359 21839676 -205684902 - L2 LINE L2 -339 2975 2600 230 327 119 0 chr3 21840458 21840559 -205684019 - L2 LINE L2 -19 3253 3141 272 255 210 25 chr3 21840745 21840902 -205683676 - MER5A DNA MER1_type 0 189 4 418 294 9 0 chr3 21841919 21842028 -205682550 + MER81 DNA DNA 2 111 -3 296 264 107 44 chr3 21842289 21842448 -205682130 + MIR3 SINE MIR 3 171 -37 577 200 73 0 chr3 21842648 21842798 -205681780 - L2 LINE L2 -253 3060 2900 204 158 0 0 chr3 21843192 21843230 -205681348 + (TTCA)n Simple_repeat Simple_repeat 1 38 0 1713 183 14 3 chr3 21843734 21844029 -205680549 + AluJb SINE Alu 3 300 -12 2948 140 21 29 chr3 21844029 21844544 -205680034 + L1MB3 LINE L1 5666 6176 -7 1497 276 90 21 chr3 21844560 21845294 -205679284 + L1ME1 LINE L1 5338 6128 -38 2056 149 41 39 chr3 21845294 21845683 -205678895 + MLT1B LTR MaLR 1 390 0 1497 276 90 21 chr3 21845683 21845721 -205678857 + L1ME1 LINE L1 6128 6162 -4 2132 90 7 3 chr3 21845735 21846024 -205678554 - AluSg SINE Alu -20 290 1 280 286 20 0 chr3 21846331 21846433 -205678145 - MIR SINE MIR -62 146 69 277 373 81 0 chr3 21846912 21847097 -205677481 + L2 LINE L2 3024 3223 -49 303 317 14 0 chr3 21847124 21847243 -205677335 + MIR SINE MIR 23 146 -62 623 268 89 0 chr3 21847501 21847658 -205676920 - MIR SINE MIR -2 260 90 197 278 14 0 chr3 21847674 21847746 -205676832 - L2 LINE L2 -303 2969 2897 1642 125 23 4 chr3 21848470 21848653 -205675925 - AluSx SINE Alu 0 316 124 441 0 0 0 chr3 21848653 21848702 -205675876 + (TG)n Simple_repeat Simple_repeat 2 50 0 1642 125 23 4 chr3 21848702 21848807 -205675771 - AluSx SINE Alu -192 124 23 344 305 34 17 chr3 21849414 21849532 -205675046 - MIR SINE MIR -110 152 33 1774 128 62 24 chr3 21850054 21850342 -205674236 + AluSx SINE Alu 1 299 -13 373 271 42 0 chr3 21850505 21850601 -205673977 + MIR SINE MIR 44 143 -119 1803 175 0 13 chr3 21850900 21850916 -205673662 - AluJo SINE Alu -8 304 289 243 0 0 0 chr3 21850916 21850943 -205673635 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 1803 175 0 13 chr3 21850943 21851234 -205673344 - AluJo SINE Alu -23 289 1 457 353 45 18 chr3 21851493 21851714 -205672864 - MIR SINE MIR -16 246 20 306 143 95 0 chr3 21852041 21852104 -205672474 - MIR3 SINE MIR -26 182 114 2533 40 0 0 chr3 21852310 21852608 -205671970 + AluY SINE Alu 1 298 -13 214 364 16 8 chr3 21853262 21853383 -205671195 + (CTAGGG)n Simple_repeat Simple_repeat 2 123 0 2039 110 0 21 chr3 21853403 21853724 -205670854 - AluSx SINE Alu 0 315 1 232 266 178 47 chr3 21854532 21854701 -205669877 - MIR3 SINE MIR -11 197 7 488 329 0 0 chr3 21855019 21855156 -205669422 - MIR SINE MIR -89 173 37 185 321 0 0 chr3 21855450 21855506 -205669072 + L3 LINE CR1 1400 1455 -122 216 380 75 29 chr3 21856260 21856607 -205667971 - L2 LINE L2 -337 2977 2615 313 261 123 31 chr3 21856708 21856838 -205667740 - MIR3 SINE MIR -62 146 5 300 314 78 10 chr3 21857167 21857269 -205667309 + L2 LINE L2 3205 3313 0 358 290 73 8 chr3 21857296 21857420 -205667158 + MIR SINE MIR 8 139 -123 1090 268 28 0 chr3 21857473 21857727 -205666851 + MIR SINE MIR 1 261 -1 2238 93 3 6 chr3 21858118 21858429 -205666149 - AluY SINE Alu -1 310 1 444 279 22 7 chr3 21858592 21858728 -205665850 - MIR SINE MIR -111 151 14 327 256 12 0 chr3 21858731 21858813 -205665765 - MER5B DNA MER1_type -7 171 89 256 300 0 0 chr3 21859096 21859166 -205665412 - MIR SINE MIR -58 150 81 511 274 41 7 chr3 21859989 21860135 -205664443 + MIR SINE MIR 52 202 -60 315 321 102 27 chr3 21860459 21860869 -205663709 + L2 LINE L2 2560 3017 -255 822 253 154 7 chr3 21860872 21861157 -205663421 - MLT1G1 LTR MaLR -267 328 2 294 362 21 0 chr3 21862216 21862310 -205662268 - L2 LINE L2 -9 3263 3168 304 275 64 18 chr3 21862348 21862457 -205662121 - L2 LINE L2 -233 3039 2926 649 292 108 20 chr3 21862651 21863278 -205661300 - L2 LINE L2 -171 3142 2462 219 69 0 0 chr3 21863284 21863313 -205661265 + (GGGGA)n Simple_repeat Simple_repeat 1 29 0 270 288 45 30 chr3 21863344 21863476 -205661102 - MER117 DNA MER1_type -32 165 32 555 307 92 9 chr3 21864254 21864472 -205660106 + MIR SINE MIR 27 262 0 381 319 77 6 chr3 21864584 21864753 -205659825 + MIR3 SINE MIR 6 186 -22 57 16 0 0 chr3 21864793 21864857 -205659721 + AT_rich Low_complexity Low_complexity 1 64 0 313 270 65 32 chr3 21864963 21865148 -205659430 + L2 LINE L2 2880 3070 -202 226 286 184 27 chr3 21865321 21865468 -205659110 + MIR SINE MIR 39 208 -54 481 300 64 5 chr3 21865567 21865769 -205658809 - MER113 DNA MER1_type? -188 333 116 1261 215 6 93 chr3 21865769 21866090 -205658488 + AluJo SINE Alu 2 294 -8 481 300 64 5 chr3 21866090 21866107 -205658471 - MER113 DNA MER1_type? -405 116 101 502 344 85 31 chr3 21866126 21866350 -205658228 + MIR SINE MIR 7 242 -20 248 172 86 52 chr3 21866661 21866719 -205657859 + MIR SINE MIR 103 162 -100 418 298 16 8 chr3 21867071 21867195 -205657383 + MIR SINE MIR 75 199 -63 370 323 8 8 chr3 21867667 21867791 -205656787 + MIR SINE MIR 21 144 -118 689 332 10 0 chr3 21867937 21868136 -205656442 - MIR SINE MIR -57 205 5 295 330 29 0 chr3 21868127 21868230 -205656348 - MIR SINE MIR -94 168 63 * 206 125 0 25 chr3 21868594 21868634 -205655944 + (TC)n Simple_repeat Simple_repeat 2 40 0 243 133 0 0 chr3 21869483 21869528 -205655050 + (TC)n Simple_repeat Simple_repeat 2 46 0 324 279 31 31 chr3 21869731 21869860 -205654718 - MIR SINE MIR -116 146 18 211 331 121 8 chr3 21870544 21870668 -205653910 - MIR3 SINE MIR -65 143 6 215 373 0 0 chr3 21870673 21870740 -205653838 + L2 LINE L2 3206 3272 0 226 271 17 0 chr3 21870802 21870861 -205653717 - MIR SINE MIR -92 170 111 267 336 0 28 chr3 21871198 21871305 -205653273 + MIR SINE MIR 68 171 -91 360 292 21 14 chr3 21871344 21871488 -205653090 + L1ME3A LINE L1 5794 5938 -232 2178 111 0 0 chr3 21871630 21871928 -205652650 - AluSx SINE Alu -14 298 1 550 211 63 28 chr3 21872086 21872228 -205652350 + MIR SINE MIR 84 230 -32 182 305 76 25 chr3 21872678 21872796 -205651782 + MIR SINE MIR 60 183 -79 213 240 53 13 chr3 21872935 21873010 -205651568 + L2 LINE L2 2985 3062 -210 328 292 94 0 chr3 21873238 21873334 -205651244 + L2 LINE L2 3150 3254 -18 1817 209 95 22 chr3 21873395 21873888 -205650690 + MLT1F LTR MaLR 12 540 -2 185 170 128 0 chr3 21874423 21874470 -205650108 - L2 LINE L2 -6 3266 3214 548 284 56 30 chr3 21874512 21874709 -205649869 + L2 LINE L2 2592 2793 -521 991 228 114 28 chr3 21874944 21875339 -205649239 + L1ME2 LINE L1 5736 6164 0 245 30 0 0 chr3 21875398 21875431 -205649147 + Alu SINE Alu 177 209 -93 248 64 0 21 chr3 21875432 21875479 -205649099 - Alu SINE Alu -1 301 256 1018 176 0 21 chr3 21875579 21875592 -205648986 + AluJo SINE Alu 124 136 -176 2143 115 3 0 chr3 21875592 21875888 -205648690 + AluSx SINE Alu 1 297 -15 1018 176 0 21 chr3 21875888 21876061 -205648517 + AluJo SINE Alu 136 306 -6 312 342 61 18 chr3 21876061 21876175 -205648403 + L1MD3 LINE L1 7658 7776 -219 575 188 0 8 chr3 21876195 21876323 -205648255 + GA-rich Low_complexity Low_complexity 3 129 0 236 300 159 12 chr3 21876359 21876616 -205647962 + L1MC4 LINE L1 7722 8016 -26 296 289 67 10 chr3 21876655 21876759 -205647819 + L2 LINE L2 2767 2876 -438 258 227 0 0 chr3 21876771 21876846 -205647732 + (CA)n Simple_repeat Simple_repeat 2 76 0 381 252 19 9 chr3 21876937 21877044 -205647534 - MLT1L LTR MaLR -341 274 167 209 283 19 0 chr3 21877259 21877312 -205647266 - MIR SINE MIR -62 146 93 193 262 75 47 chr3 21877830 21877937 -205646641 - L3b LINE CR1 -125 1458 1349 2135 125 0 7 chr3 21879378 21879682 -205644896 + AluSx SINE Alu 1 302 -10 410 271 256 0 chr3 21879805 21879938 -205644640 + MIR SINE MIR 31 197 -65 2122 113 3 3 chr3 21880087 21880389 -205644189 - AluSg SINE Alu -8 302 1 264 342 17 17 chr3 21880505 21880622 -205643956 - MIR SINE MIR -79 183 67 395 312 68 30 chr3 21880913 21881176 -205643402 + L2 LINE L2 1853 2125 -1189 248 241 190 0 chr3 21881430 21881509 -205643069 - MIR SINE MIR -7 255 162 379 271 29 24 chr3 21881522 21881692 -205642886 - MLT1H LTR MaLR -1 548 378 435 75 0 0 chr3 21881730 21881783 -205642795 + AluSq SINE Alu 123 175 -138 252 256 207 0 chr3 21881827 21881909 -205642669 - MLT1L LTR MaLR -380 169 71 489 328 74 4 chr3 21882418 21882647 -205641931 + MIR SINE MIR 17 261 -1 463 258 94 103 chr3 21882662 21882836 -205641742 - MER46C DNA MER2_type -3 335 164 790 161 0 29 chr3 21882836 21882973 -205641605 + FLAM_C SINE Alu 1 133 0 463 258 94 103 chr3 21882973 21883127 -205641451 - MER46C DNA MER2_type -174 164 10 2268 108 0 0 chr3 21883143 21883440 -205641138 - AluSx SINE Alu -15 297 1 495 244 106 19 chr3 21883458 21883618 -205640960 + MER5B DNA MER1_type 2 175 -3 263 320 103 26 chr3 21883665 21883859 -205640719 - L2 LINE L2 -212 3060 2852 2167 117 0 0 chr3 21884067 21884367 -205640211 - AluSx SINE Alu -12 300 1 1934 201 66 9 chr3 21884708 21885146 -205639432 + MLT1C LTR MaLR 1 463 -4 621 270 93 17 chr3 21885149 21885438 -205639140 + MER113 DNA MER1_type? 62 372 -149 210 118 0 0 chr3 21885438 21885472 -205639106 + (TTCTCC)n Simple_repeat Simple_repeat 1 34 0 2009 142 3 6 chr3 21885472 21885783 -205638795 - AluSq SINE Alu -2 311 2 1124 126 0 88 chr3 21885836 21885931 -205638647 + L1MA4 LINE L1 6083 6185 -115 2021 118 35 0 chr3 21885931 21886219 -205638359 - AluSx SINE Alu -14 298 1 1124 126 0 88 chr3 21886219 21886362 -205638216 + L1MA4 LINE L1 6185 6300 0 329 301 0 11 chr3 21886454 21886547 -205638031 - MIR SINE MIR -61 147 56 318 320 20 0 chr3 21887116 21887216 -205637362 + MIR SINE MIR 151 252 -10 2139 112 3 0 chr3 21887314 21887639 -205636939 + AluSp SINE Alu 1 313 0 885 279 134 53 chr3 21887707 21888342 -205636236 + MER115 DNA AcHobo 2 687 -6 412 326 28 22 chr3 21888813 21888994 -205635584 - MIR SINE MIR -74 188 7 268 82 20 20 chr3 21889504 21889553 -205635025 + (GAA)n Simple_repeat Simple_repeat 1 49 0 344 172 118 21 chr3 21889569 21889662 -205634916 + MER5B DNA MER1_type 72 173 -5 805 179 87 0 chr3 21889677 21889850 -205634728 - MER5A DNA MER1_type 0 189 2 206 311 0 16 chr3 21889874 21889935 -205634643 + MER5A DNA MER1_type 16 75 -114 753 180 0 0 chr3 21889936 21890058 -205634520 + FLAM_C SINE Alu 6 127 -16 785 98 80 0 chr3 21890061 21890173 -205634405 + 5S rRNA rRNA 1 121 0 2168 111 10 0 chr3 21890179 21890485 -205634093 + AluSg SINE Alu 1 309 -1 1320 147 0 10 chr3 21890495 21890817 -205633761 + AluJb SINE Alu 5 324 0 650 246 89 59 chr3 21890936 21891369 -205633209 - L1ME2 LINE L1 -144 6020 5579 692 194 14 58 chr3 21891372 21891511 -205633067 + FLAM_A SINE Alu 1 133 0 192 222 37 49 chr3 21891978 21892059 -205632519 - L2 LINE L2 -283 2989 2910 618 337 5 10 chr3 21892094 21892299 -205632279 - MIR SINE MIR -14 248 45 455 271 54 10 chr3 21892990 21893193 -205631385 - MER102b DNA MER1_type 0 341 130 180 0 0 0 chr3 21893193 21893213 -205631365 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1147 191 0 20 chr3 21893215 21893419 -205631159 - AluJb SINE Alu -30 282 83 293 278 30 30 chr3 21893419 21893552 -205631026 - MER102b DNA MER1_type -207 134 2 391 247 79 18 chr3 21893556 21893720 -205630858 - MIR SINE MIR -63 145 15 986 267 4 4 chr3 21893907 21894147 -205630431 + MIR SINE MIR 18 257 -5 2252 100 3 0 chr3 21894148 21894448 -205630130 + AluSp SINE Alu 1 301 -12 343 260 60 10 chr3 21894462 21894562 -205630016 - L2 LINE L2 -8 3305 3201 2334 75 23 0 chr3 21895468 21895774 -205628804 - AluSq SINE Alu 0 313 1 204 40 0 0 chr3 21895844 21895869 -205628709 + (GA)n Simple_repeat Simple_repeat 2 26 0 746 277 55 18 chr3 21896015 21896235 -205628343 - MIR SINE MIR -1 261 34 228 200 0 0 chr3 21896587 21896637 -205627941 + (TG)n Simple_repeat Simple_repeat 2 51 0 38 0 0 0 chr3 21896660 21896698 -205627880 + GC_rich Low_complexity Low_complexity 1 38 0 423 0 0 0 chr3 21897207 21897254 -205627324 + (TG)n Simple_repeat Simple_repeat 1 47 0 226 276 0 20 chr3 21897403 21897501 -205627077 + (TG)n Simple_repeat Simple_repeat 1 96 0 304 198 176 0 chr3 21898575 21898656 -205625922 + MIR3 SINE MIR 52 148 -60 227 318 37 72 chr3 21898656 21898857 -205625721 + MIR SINE MIR 3 196 -66 184 335 84 61 chr3 21899955 21900298 -205624280 - L2 LINE L2 -86 3186 2836 746 136 27 0 chr3 21900324 21900434 -205624144 - FLAM_C SINE Alu -25 118 6 341 242 14 67 chr3 21901034 21901174 -205623404 + MER5A DNA MER1_type 9 139 -44 1751 137 0 0 chr3 21901174 21901430 -205623148 - AluJb SINE Alu -7 305 50 2165 186 61 26 chr3 21901450 21901629 -205622949 - L1ME2 LINE L1 -1 6163 5992 1678 170 20 13 chr3 21901629 21901935 -205622643 - AluJb SINE Alu -4 308 1 2165 186 61 26 chr3 21901935 21902325 -205622253 - L1ME2 LINE L1 -172 5992 5574 2054 106 0 0 chr3 21902461 21902735 -205621843 - AluSx SINE Alu -9 303 30 374 338 50 6 chr3 21902738 21902898 -205621680 - L1M4 LINE L1 -3104 3042 2876 2442 67 0 6 chr3 21902925 21903237 -205621341 - AluY SINE Alu -1 310 1 253 284 102 0 chr3 21903689 21903777 -205620801 - L2 LINE L2 -14 3258 3162 224 197 15 136 chr3 21903923 21903989 -205620589 - MIR3 SINE MIR -42 166 109 2103 106 31 0 chr3 21904035 21904327 -205620251 + AluSg SINE Alu 1 301 -9 395 319 118 12 chr3 21905252 21905565 -205619013 + L2 LINE L2 2718 3053 -219 229 236 0 18 chr3 21905554 21905609 -205618969 + L2 LINE L2 3243 3296 -17 * 192 40 0 0 chr3 21905890 21905915 -205618663 + (TCCA)n Simple_repeat Simple_repeat 3 27 0 394 264 132 14 chr3 21905917 21906061 -205618517 - L2 LINE L2 -13 3300 3140 1529 150 75 4 chr3 21906529 21906783 -205617795 + AluJb SINE Alu 3 274 -38 391 250 11 0 chr3 21906783 21906871 -205617707 - MER5A DNA MER1_type -92 97 9 349 167 157 46 chr3 21906934 21907042 -205617536 - MIR SINE MIR -66 196 77 758 247 23 0 chr3 21907625 21907799 -205616779 + MER5A DNA MER1_type 6 183 -6 187 305 122 53 chr3 21907883 21908014 -205616564 - MIR3 SINE MIR -14 194 55 27 0 0 0 chr3 21908058 21908085 -205616493 + AT_rich Low_complexity Low_complexity 1 27 0 880 295 90 30 chr3 21908125 21908559 -205616019 - MLT1K LTR MaLR -38 550 91 1722 159 10 23 chr3 21908648 21908949 -205615629 - AluJo SINE Alu -5 307 11 227 206 65 43 chr3 21909123 21909215 -205615363 - MER117 DNA MER1_type -16 181 88 383 245 57 9 chr3 21909255 21909361 -205615217 + L2 LINE L2 3200 3310 -3 337 322 0 22 chr3 21910203 21910386 -205614192 + (TG)n Simple_repeat Simple_repeat 1 179 0 1226 163 0 5 chr3 21910977 21911186 -205613392 - AluJb SINE Alu -16 296 89 798 155 8 0 chr3 21911186 21911315 -205613263 + AluJo SINE Alu 7 136 -176 675 235 53 114 chr3 21911359 21911579 -205612999 - L1MC4 LINE L1 -32 8010 7732 2365 70 0 3 chr3 21911579 21911881 -205612697 + AluY SINE Alu 1 301 -10 675 235 53 114 chr3 21911881 21912046 -205612532 - L1MC4 LINE L1 -310 7732 7559 614 305 94 14 chr3 21912813 21913026 -205611552 - MIR SINE MIR 0 262 33 208 217 113 82 chr3 21913391 21913535 -205611043 + MIR3 SINE MIR 2 150 -68 333 347 20 14 chr3 21913626 21913773 -205610805 + MIR SINE MIR 14 161 -101 1454 109 0 0 chr3 21914283 21914475 -205610103 + AluSx SINE Alu 4 195 -117 346 325 110 51 chr3 21914533 21914619 -205609959 - L1MC/D LINE L1 -2016 5792 5713 1886 146 24 0 chr3 21914619 21914913 -205609665 - AluJb SINE Alu -11 301 1 710 216 0 0 chr3 21914917 21915056 -205609522 - L1MB2 LINE L1 -2 6169 6031 346 325 110 51 chr3 21915056 21915201 -205609377 - L1MC/D LINE L1 -2097 5711 5542 362 278 49 94 chr3 21915444 21915689 -205608889 + MIR SINE MIR 17 250 -12 321 268 82 22 chr3 21915812 21915955 -205608623 - MIR SINE MIR -60 148 38 217 288 30 12 chr3 21916420 21916527 -205608051 + MIR SINE MIR 55 165 -43 225 296 70 0 chr3 21917488 21917559 -205607019 - L2 LINE L2 0 3313 3238 292 273 78 0 chr3 21917629 21917706 -205606872 - MIR3 SINE MIR -45 163 81 294 176 18 0 chr3 21917789 21917854 -205606724 + MIR SINE MIR 89 145 -63 202 313 62 39 chr3 21918552 21918680 -205605898 - L2 LINE L2 -303 2969 2839 298 209 9 109 chr3 21919319 21919429 -205605149 - MIR SINE MIR -63 145 47 237 269 161 46 chr3 21920201 21920331 -205604247 + MIR3 SINE MIR 37 181 -27 304 355 26 33 chr3 21920358 21920510 -205604068 + MIR SINE MIR 51 201 -61 471 285 183 11 chr3 21921395 21921581 -205602997 - MIR SINE MIR -14 248 31 582 260 19 13 chr3 21922553 21922707 -205601871 - MIR SINE MIR -2 260 106 424 230 119 16 chr3 21923311 21923437 -205601141 + MIR SINE MIR 7 145 -117 454 286 28 21 chr3 21923741 21923903 -205600675 - MER5A DNA MER1_type -6 172 21 180 282 26 64 chr3 21923965 21924043 -205600535 - MIR SINE MIR -109 153 79 202 167 48 0 chr3 21924911 21924953 -205599625 + MIR SINE MIR 102 145 -63 295 191 79 56 chr3 21925033 21925122 -205599456 + MIR3 SINE MIR 114 204 -4 207 292 87 68 chr3 21925499 21925718 -205598860 - L2 LINE L2 -154 3118 2896 256 310 14 0 chr3 21926058 21926129 -205598449 - MIR SINE MIR -111 151 80 2126 120 3 7 chr3 21927648 21927957 -205596621 + AluSx SINE Alu 1 308 -4 405 224 296 31 chr3 21928276 21928472 -205596106 + MIR SINE MIR 14 261 -1 190 161 0 0 chr3 21928473 21928504 -205596074 + L2 LINE L2 3023 3053 -260 266 261 189 9 chr3 21928531 21928642 -205595936 + L2 LINE L2 3152 3282 -31 347 252 58 29 chr3 21929288 21929391 -205595187 + MIR SINE MIR 36 141 -67 1582 203 0 10 chr3 21930318 21930628 -205593950 - AluJo SINE Alu -1 311 5 405 0 0 0 chr3 21930665 21930710 -205593868 + (T)n Simple_repeat Simple_repeat 1 45 0 283 255 113 0 chr3 21930744 21930850 -205593728 - MER117 DNA MER1_type -46 151 34 323 316 49 85 chr3 21931112 21931359 -205593219 + MIR SINE MIR 11 248 -14 1595 116 0 0 chr3 21931386 21931602 -205592976 - AluJb SINE Alu -12 300 85 1364 178 19 45 chr3 21931605 21931914 -205592664 - L1MA8 LINE L1 -4 6287 5987 239 0 32 0 chr3 21931940 21931971 -205592607 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 461 123 0 14 chr3 21932099 21932204 -205592374 + AluSp/q SINE Alu 224 313 0 187 184 0 0 chr3 21932206 21932244 -205592334 + MER5A DNA MER1_type 68 105 -84 274 368 53 0 chr3 21932287 21932420 -205592158 - MIR3 SINE MIR -25 183 44 600 291 106 48 chr3 21932576 21933037 -205591541 - L2 LINE L2 -1 3312 2825 233 222 42 28 chr3 21933242 21933314 -205591264 - AluSg/x SINE Alu -139 163 91 422 247 201 31 chr3 21933357 21933551 -205591027 - MIR SINE MIR -6 256 30 214 308 58 64 chr3 21934321 21934477 -205590101 + MIR SINE MIR 82 236 -26 185 262 71 85 chr3 21934994 21935135 -205589443 + MIR SINE MIR 28 166 -96 611 286 25 12 chr3 21935203 21935364 -205589214 - MIR SINE MIR -15 247 85 515 320 95 16 chr3 21935481 21935869 -205588709 - L2 LINE L2 -363 2951 2533 255 349 83 23 chr3 21936147 21936365 -205588213 + L3 LINE CR1 1209 1439 -138 479 309 24 24 chr3 21936990 21937155 -205587423 - L2 LINE L2 -31 3282 3118 462 259 89 51 chr3 21937157 21937393 -205587185 - MER102a DNA MER1_type -9 321 77 236 234 0 0 chr3 21937451 21937501 -205587077 - MIR SINE MIR -56 152 108 337 204 36 80 chr3 21937895 21938032 -205586546 - LTR33 LTR ERVL -374 147 17 235 225 14 42 chr3 21939205 21939276 -205585302 + MIR SINE MIR 81 149 -113 358 273 79 42 chr3 21939286 21939502 -205585076 + MER113 DNA MER1_type? 3 226 -295 2515 58 3 0 chr3 21940265 21940574 -205584004 + AluY SINE Alu 1 310 -1 217 234 0 0 chr3 21941010 21941057 -205583521 - L2 LINE L2 0 3313 3267 2573 170 43 2 chr3 21941251 21941693 -205582885 + L1PA16 LINE L1 5704 6163 -3 561 336 94 8 chr3 21941709 21941944 -205582634 + MIR SINE MIR 2 256 -6 301 180 22 0 chr3 21942105 21942194 -205582384 + (TCCA)n Simple_repeat Simple_repeat 3 93 0 720 203 8 8 chr3 21942226 21942476 -205582102 + (TCCA)n Simple_repeat Simple_repeat 1 250 0 235 269 0 15 chr3 21942499 21942566 -205582012 + (TCCA)n Simple_repeat Simple_repeat 2 67 0 555 282 0 8 chr3 21943100 21943231 -205581347 + MIR SINE MIR 50 179 -83 1075 268 80 31 chr3 21943369 21943826 -205580752 - MLT1H LTR MaLR 0 549 28 321 279 143 14 chr3 21944676 21944816 -205579762 + MIR SINE MIR 27 184 -78 2213 101 0 0 chr3 21944860 21945174 -205579404 - AluSc SINE Alu 0 314 1 555 297 65 12 chr3 21946009 21946255 -205578323 + L2 LINE L2 2425 2683 -631 200 220 60 0 chr3 21946408 21946458 -205578120 + MIR SINE MIR 96 148 -60 * 350 298 133 11 chr3 21946450 21946638 -205577940 - L2 LINE L2 -234 3038 2828 227 278 19 74 chr3 21947339 21947447 -205577131 + MIR SINE MIR 57 162 -46 211 212 82 59 chr3 21947509 21947594 -205576984 - MIR SINE MIR -134 128 42 274 299 0 0 chr3 21948593 21948670 -205575908 + MIR SINE MIR 74 150 -112 * 946 265 137 32 chr3 21948668 21949106 -205575472 - L2 LINE L2 0 3313 2830 314 319 145 6 chr3 21949246 21949412 -205575166 - L2 LINE L2 -559 2755 2567 649 296 71 10 chr3 21949975 21950283 -205574295 - L1MC4a LINE L1 -1869 5939 5613 442 274 117 20 chr3 21951119 21951316 -205573262 + MIR SINE MIR 1 216 -46 450 248 124 0 chr3 21951528 21951649 -205572929 - L2 LINE L2 0 3313 3178 21 0 0 0 chr3 21951686 21951707 -205572871 + AT_rich Low_complexity Low_complexity 1 21 0 264 160 60 0 chr3 21951823 21951873 -205572705 - MIR SINE MIR -99 163 111 180 394 21 11 chr3 21952625 21952719 -205571859 - MIR SINE MIR -65 143 49 345 240 141 5 chr3 21952779 21952911 -205571667 - MIR SINE MIR -63 145 3 239 357 107 9 chr3 21952916 21953028 -205571550 - MIR3 SINE MIR -71 137 15 460 235 117 66 chr3 21953318 21953514 -205571064 + MER63A DNA MER1_type 3 208 -2 183 320 247 0 chr3 21953699 21953796 -205570782 + MER5A DNA MER1_type 69 189 0 316 192 14 27 chr3 21954811 21954884 -205569694 - MIR SINE MIR -58 150 85 * 327 219 270 15 chr3 21954865 21955002 -205569576 + MIR SINE MIR 85 256 -6 847 163 30 48 chr3 21955016 21955182 -205569396 - FRAM SINE Alu 0 166 4 1051 275 39 46 chr3 21955265 21955654 -205568924 - L2 LINE L2 -2 3311 2926 216 209 0 0 chr3 21956183 21956226 -205568352 + MIR SINE MIR 97 139 -69 690 289 31 4 chr3 21956315 21956540 -205568038 - MIR SINE MIR -33 229 3 285 296 112 24 chr3 21956757 21956882 -205567696 + MIR3 SINE MIR 10 145 -63 608 232 56 67 chr3 21957380 21957540 -205567038 - MER4C LTR ERV1 0 695 535 1831 156 14 3 chr3 21957540 21957829 -205566749 + AluJb SINE Alu 1 292 -20 608 232 56 67 chr3 21957829 21958231 -205566347 - MER4C LTR ERV1 -160 535 1 609 312 45 5 chr3 21958292 21958513 -205566065 + MIR SINE MIR 28 257 -5 182 152 0 0 chr3 21959074 21959107 -205565471 - MIR SINE MIR -62 146 114 328 364 32 13 chr3 21959194 21959348 -205565230 - MIR3 SINE MIR -14 194 38 728 272 31 10 chr3 21959436 21959631 -205564947 + MIR SINE MIR 59 257 -5 217 283 11 54 chr3 21959861 21959953 -205564625 + MIR3 SINE MIR 90 177 -31 210 259 176 0 chr3 21960075 21960160 -205564418 + MIR SINE MIR 40 139 -123 601 227 88 31 chr3 21960614 21960822 -205563756 - MIR SINE MIR -14 248 31 491 252 103 28 chr3 21961015 21961109 -205563469 - MIR SINE MIR -5 257 171 2285 91 7 10 chr3 21961109 21961417 -205563161 + AluSx SINE Alu 6 312 0 491 252 103 28 chr3 21961417 21961572 -205563006 - MIR SINE MIR -91 171 5 278 293 181 33 chr3 21962547 21962762 -205561816 - MIR SINE MIR -9 253 7 218 271 0 57 chr3 21963774 21963844 -205560734 - L2 LINE L2 0 3313 3248 207 0 0 0 chr3 21966255 21966278 -205558300 + (T)n Simple_repeat Simple_repeat 1 23 0 336 238 0 59 chr3 21966542 21966643 -205557935 - MIR3 SINE MIR -15 193 99 245 330 179 9 chr3 21969168 21969274 -205555304 - MIR SINE MIR -55 153 30 734 169 12 41 chr3 21969508 21969680 -205554898 - L1MB3 LINE L1 -35 6148 5982 453 276 105 17 chr3 21969687 21969868 -205554710 - MIR SINE MIR -54 208 12 2099 135 0 0 chr3 21970160 21970457 -205554121 - AluSx SINE Alu -15 297 1 261 258 192 8 chr3 21970577 21970697 -205553881 - MIR SINE MIR -56 206 65 202 216 0 59 chr3 21971717 21971768 -205552810 - MIR3 SINE MIR -48 160 113 321 364 45 45 chr3 21971803 21972089 -205552489 - L2 LINE L2 -1 3271 2986 364 299 163 45 chr3 21973380 21973697 -205550881 - L1M LINE L1 -743 5403 5102 364 333 33 22 chr3 21974439 21974619 -205549959 - L2 LINE L2 -209 3063 2882 396 292 11 0 chr3 21975163 21975252 -205549326 + MIR SINE MIR 63 152 -56 368 316 170 19 chr3 21976149 21976626 -205547952 - L2 LINE L2 -1 3271 2709 285 333 0 0 chr3 21977022 21977097 -205547481 + MIR SINE MIR 69 143 -65 251 307 0 0 chr3 21978744 21978819 -205545759 - Charlie8 DNA MER1_type -2214 203 129 1319 152 74 16 chr3 21978835 21979079 -205545499 - AluJo SINE Alu -30 282 25 232 307 145 11 chr3 21979520 21979699 -205544879 + L3 LINE CR1 1176 1378 -199 192 321 28 37 chr3 21979789 21979898 -205544680 - MIR3 SINE MIR -20 188 81 302 96 0 19 chr3 21980266 21980318 -205544260 + (TG)n Simple_repeat Simple_repeat 2 52 0 294 327 30 0 chr3 21982789 21982890 -205541688 - MIR3 SINE MIR -4 204 101 207 69 0 0 chr3 22083124 22083153 -205441425 + (TC)n Simple_repeat Simple_repeat 1 29 0 267 103 0 0 chr3 22083153 22083192 -205441386 + (TG)n Simple_repeat Simple_repeat 2 40 0 4820 137 23 29 chr3 22083192 22083524 -205441054 - L1MA9 LINE L1 -162 6150 5818 2366 94 0 0 chr3 22083524 22083832 -205440746 - AluSc SINE Alu -1 308 1 4820 137 23 29 chr3 22083832 22084358 -205440220 - L1MA9 LINE L1 -494 5818 5297 2255 115 6 6 chr3 22085920 22086232 -205438346 + AluSx SINE Alu 1 312 0 371 265 17 34 chr3 22088737 22088854 -205435724 - L2 LINE L2 -6 3307 3193 608 124 124 70 chr3 22089168 22089297 -205435281 + MER44D DNA MER2_type 1 406 -203 23728 136 37 12 chr3 22089298 22092461 -205432117 - L1MA3 LINE L1 0 7724 4640 2242 123 0 3 chr3 22092461 22092761 -205431817 - AluSx SINE Alu -11 301 3 23728 136 37 12 chr3 22092761 22094041 -205430537 - L1MA3 LINE L1 -3084 4640 3393 1828 129 53 0 chr3 22094041 22094345 -205430233 - AluSx SINE Alu 0 324 7 23728 136 37 12 chr3 22094345 22095231 -205429347 - L1MA3 LINE L1 -4331 3393 2530 4765 50 0 14 chr3 22095231 22095817 -205428761 - L1PA6 LINE L1 -6 6148 5571 23728 136 37 12 chr3 22095817 22098009 -205426569 - L1MA3 LINE L1 -5194 2530 20 1019 178 55 0 chr3 22098012 22098214 -205426364 + MER44D DNA MER2_type 485 697 -8 2608 72 29 0 chr3 22099729 22100074 -205424504 - THE1A LTR MaLR 0 355 1 2906 67 30 40 chr3 22100074 22100115 -205424463 - THE1A-int LTR MaLR 0 1580 1540 2283 117 0 0 chr3 22100115 22100415 -205424163 - AluSx SINE Alu -12 300 1 2906 67 30 40 chr3 22100415 22100778 -205423800 - THE1A-int LTR MaLR -40 1540 1180 263 222 34 77 chr3 22101163 22101280 -205423298 - MIR SINE MIR -82 180 69 184 246 31 15 chr3 22103362 22103427 -205421151 - MIR SINE MIR -120 142 77 * 294 341 50 22 chr3 22103424 22103606 -205420972 - MIR3 SINE MIR -6 202 16 409 260 102 16 chr3 22104329 22104456 -205420122 + MIR3 SINE MIR 34 171 -37 2471 77 0 0 chr3 22104642 22104942 -205419636 + AluY SINE Alu 1 300 -11 10209 221 38 37 chr3 22105038 22105120 -205419458 - L1M4 LINE L1 -712 5466 5386 423 0 0 0 chr3 22105120 22105167 -205419411 + (TG)n Simple_repeat Simple_repeat 2 48 0 10209 221 38 37 chr3 22105167 22105487 -205419091 - L1M4 LINE L1 -792 5386 5068 2383 91 7 13 chr3 22105487 22105796 -205418782 - AluSp SINE Alu -6 307 1 10209 221 38 37 chr3 22105796 22106307 -205418271 - L1M4 LINE L1 -1110 5068 4559 2086 125 4 0 chr3 22106307 22106617 -205417961 - AluSx SINE Alu 0 311 1 10209 221 38 37 chr3 22106617 22108557 -205416021 - L1M4 LINE L1 -1619 4559 2609 2233 118 0 13 chr3 22108557 22108871 -205415707 - AluSx SINE Alu -2 310 1 10209 221 38 37 chr3 22108871 22109248 -205415330 - L1M4 LINE L1 -3569 2609 2234 238 148 49 33 chr3 22109391 22109452 -205415126 + L2 LINE L2 3248 3309 -4 238 329 0 0 chr3 22109526 22109610 -205414968 - MER117 DNA MER1_type 0 197 114 271 111 238 0 chr3 22109610 22109673 -205414905 - MLT1K LTR MaLR 0 588 511 242 226 16 0 chr3 22110090 22110152 -205414426 - MER117 DNA MER1_type -79 118 56 266 231 176 22 chr3 22110243 22110334 -205414244 + MIR SINE MIR 32 136 -72 1800 166 34 9 chr3 22110339 22110665 -205413913 + MLT1A1 LTR MaLR 5 338 -27 236 266 80 9 chr3 22110679 22110792 -205413786 + MIR SINE MIR 132 252 -10 1281 264 68 15 chr3 22110800 22111198 -205413380 - LTR16C LTR ERVL -2 489 71 4067 159 28 29 chr3 22111794 22112300 -205412278 - L1MB7 LINE L1 -11 6173 5667 2403 160 13 8 chr3 22112300 22112694 -205411884 + MSTD LTR MaLR 1 396 0 4067 159 28 29 chr3 22112694 22112978 -205411600 - L1MB7 LINE L1 -517 5667 5384 2242 291 9 7 chr3 22113170 22113751 -205410827 - MLT1K LTR MaLR -4 584 3 1338 190 6 2 chr3 22113959 22114265 -205410313 - MLT1A1 LTR MaLR -4 361 1 417 308 44 19 chr3 22115135 22115294 -205409284 + MIR SINE MIR 21 183 -79 814 153 8 0 chr3 22115644 22115775 -205408803 + AluJo SINE Alu 5 136 -176 440 238 16 32 chr3 22116317 22116443 -205408135 + MLT1J2 LTR MaLR 84 207 -243 1296 176 176 60 chr3 22116514 22116867 -205407711 + MSTD LTR MaLR 1 394 -2 1080 128 6 34 chr3 22116936 22117115 -205407463 + MER20 DNA MER1_type 46 219 0 378 296 19 19 chr3 22117138 22117300 -205407278 + L2 LINE L2 2710 2871 -443 401 311 114 18 chr3 22117596 22117824 -205406754 + MIR SINE MIR 11 260 -2 309 276 20 0 chr3 22118551 22118649 -205405929 + MIR SINE MIR 109 208 -54 599 161 90 13 chr3 22118650 22118805 -205405773 - L1 LINE L1 -3004 3142 2976 3429 137 28 18 chr3 22118806 22119405 -205405173 + L1MA7 LINE L1 5687 6291 0 236 250 42 0 chr3 22119426 22119498 -205405080 + MLT1F1 LTR MaLR 73 147 -420 2266 233 25 12 chr3 22119498 22120056 -205404522 + L1MC3 LINE L1 7213 7777 -8 362 284 87 28 chr3 22120259 22120477 -205404101 + L2 LINE L2 2666 2896 -418 2138 196 40 13 chr3 22120952 22121407 -205403171 + MLT1C LTR MaLR 1 467 0 659 256 30 6 chr3 22122199 22122367 -205402211 + MIR SINE MIR 28 199 -63 24 0 0 0 chr3 22124088 22124112 -205400466 + AT_rich Low_complexity Low_complexity 1 24 0 930 226 72 25 chr3 22124695 22125080 -205399498 - MER68 LTR ERV1 -122 440 1 2430 189 50 20 chr3 22125080 22125780 -205398798 - L1MC/D LINE L1 -540 5787 5060 1282 184 9 0 chr3 22125780 22125997 -205398581 + MER20 DNA MER1_type 1 219 0 2430 189 50 20 chr3 22125997 22126219 -205398359 - L1MC/D LINE L1 -1267 5060 4846 1098 184 24 0 chr3 22126233 22126439 -205398139 - L1MC/D LINE L1 -2267 3862 3652 * 3516 255 75 46 chr3 22126420 22126922 -205397656 - L1MEc LINE L1 -2215 4000 3514 2341 96 0 0 chr3 22126922 22127214 -205397364 - AluSc SINE Alu -17 292 1 3516 255 75 46 chr3 22127214 22128822 -205395756 - L1MEc LINE L1 -2701 3514 1881 2323 101 0 3 chr3 22128825 22129122 -205395456 - AluSx SINE Alu -16 296 1 593 228 89 113 chr3 22129184 22129512 -205395066 - L1MEd LINE L1 -2666 3463 3129 2300 128 0 0 chr3 22129512 22129818 -205394760 - AluSx SINE Alu -6 306 1 1925 150 0 0 chr3 22129827 22130094 -205394484 - AluSx SINE Alu -45 267 1 593 228 89 113 chr3 22130094 22130570 -205394008 - L1MEd LINE L1 -3008 3121 2635 15715 123 21 10 chr3 22130570 22131392 -205393186 - Tigger1 DNA MER2_type 0 2418 1606 2314 111 0 13 chr3 22131392 22131562 -205393016 - AluSx SINE Alu -9 303 132 2383 81 0 10 chr3 22131562 22131858 -205392720 - AluY SINE Alu -18 293 1 2185 92 6 68 chr3 22131858 22132183 -205392395 - AluSp SINE Alu -8 305 1 2314 111 0 13 chr3 22132183 22132318 -205392260 - AluSx SINE Alu -178 134 1 15715 123 21 10 chr3 22132318 22133887 -205390691 - Tigger1 DNA MER2_type -812 1606 1 593 228 89 113 chr3 22133887 22134215 -205390363 - L1MEd LINE L1 -3494 2635 758 2017 186 7 63 chr3 22134845 22135292 -205389286 - MER66B LTR ERV1 -38 448 27 212 200 89 0 chr3 22135299 22135344 -205389234 - L2 LINE L2 -658 2656 2608 473 43 145 0 chr3 22135344 22135413 -205389165 + MADE1 DNA Mariner 1 79 -1 303 261 34 59 chr3 22135449 22135568 -205389010 - L2 LINE L2 -829 2485 2370 2748 79 3 3 chr3 22135878 22136231 -205388347 - THE1A LTR MaLR 0 355 3 11808 88 14 1 chr3 22136233 22137794 -205386784 - THE1A-int LTR MaLR 0 1580 1 2679 82 8 3 chr3 22137794 22138147 -205386431 - THE1A LTR MaLR 0 355 1 411 293 127 6 chr3 22138406 22138587 -205385991 - LTR33 LTR ERVL -198 323 121 627 271 23 7 chr3 22138775 22139049 -205385529 - L1MC/D LINE L1 -2081 5727 5366 1209 189 35 16 chr3 22139054 22139308 -205385270 - L1MB4 LINE L1 -14 6166 5908 1786 230 38 9 chr3 22139308 22139756 -205384822 - MER65C LTR ERV1 0 461 1 1962 223 56 71 chr3 22140250 22140801 -205383777 - MER65-int LTR ERV1 -656 4215 3673 242 311 49 8 chr3 22141356 22141478 -205383100 + MIR SINE MIR 114 240 -22 1594 236 89 23 chr3 22141497 22141968 -205382610 - MLT1D LTR MaLR -3 502 1 656 169 90 24 chr3 22141999 22142165 -205382413 - MIR SINE MIR -66 196 20 1909 61 0 41 chr3 22142181 22142426 -205382152 - AluSg SINE Alu -75 235 1 181 205 0 0 chr3 22142463 22142502 -205382076 + MIR SINE MIR 224 262 0 576 250 0 0 chr3 22143695 22143823 -205380755 - MIR SINE MIR -51 211 84 2493 46 0 0 chr3 22143841 22144123 -205380455 + AluSp SINE Alu 1 282 -31 2004 134 20 0 chr3 22146256 22146548 -205378030 + AluJb SINE Alu 1 298 -14 2309 248 97 26 chr3 22147192 22148027 -205376551 - L1MC4 LINE L1 -30 8012 7119 231 262 90 33 chr3 22148519 22148641 -205375937 + MIR SINE MIR 87 215 -47 197 226 97 54 chr3 22148700 22148793 -205375785 + L2 LINE L2 1875 1971 -1343 491 259 65 22 chr3 22149321 22149506 -205375072 + L2 LINE L2 3118 3310 -3 462 272 15 29 chr3 22149783 22149919 -205374659 - L2 LINE L2 0 3313 3180 1460 168 39 81 chr3 22150630 22150939 -205373639 + AluJo SINE Alu 5 300 -12 2203 121 0 0 chr3 22151445 22151742 -205372836 + AluSg SINE Alu 1 297 -13 207 234 0 0 chr3 22153001 22153048 -205371530 - L2 LINE L2 -13 3259 3213 260 323 21 0 chr3 22153280 22153373 -205371205 + MIR SINE MIR 59 153 -109 779 157 0 22 chr3 22154111 22154245 -205370333 - AluJ SINE Alu 0 312 182 872 129 8 0 chr3 22154254 22154378 -205370200 - AluJ SINE Alu -187 125 1 225 0 0 0 chr3 22156310 22156335 -205368243 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2308 82 3 28 chr3 22156820 22157139 -205367439 + AluY SINE Alu 1 311 0 2362 85 3 0 chr3 22157412 22157706 -205366872 + AluSx SINE Alu 1 295 -17 27 29 0 0 chr3 22159586 22159620 -205364958 + AT_rich Low_complexity Low_complexity 1 34 0 758 266 54 76 chr3 22159829 22160291 -205364287 - MLT1J LTR MaLR -52 459 8 472 324 94 25 chr3 22160672 22160916 -205363662 + MIR SINE MIR 2 262 0 221 285 33 80 chr3 22163418 22163569 -205361009 - MIR3 SINE MIR -62 146 3 2241 181 32 7 chr3 22163721 22164152 -205360426 + L1M4 LINE L1 4594 5035 -1111 2517 63 0 3 chr3 22164284 22164583 -205359995 + AluY SINE Alu 1 298 -13 1176 78 13 13 chr3 22165093 22165247 -205359331 + AluSp SINE Alu 147 300 -13 1187 164 130 34 chr3 22165258 22165582 -205358996 - Charlie5 DNA MER1_type -25 2587 2233 360 265 39 0 chr3 22165577 22165679 -205358899 - Charlie5 DNA MER1_type -2506 106 1 * 2057 110 38 10 chr3 22166746 22167062 -205357516 - AluSx SINE Alu 0 312 1 2378 93 0 3 chr3 22168560 22168871 -205355707 - AluSq SINE Alu -3 310 1 239 301 125 34 chr3 22169473 22169649 -205354929 + L2 LINE L2 3076 3267 -5 316 360 36 21 chr3 22169969 22170228 -205354350 + L2 LINE L2 2777 3037 -235 198 0 0 0 chr3 22170229 22170251 -205354327 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 557 251 95 71 chr3 22170466 22170833 -205353745 - MLT1J LTR MaLR -31 584 201 3966 167 63 15 chr3 22170927 22171736 -205352842 + L1MB8 LINE L1 5331 6178 0 418 203 203 7 chr3 22173028 22173176 -205351402 + MER104 DNA MER2_type 4 180 0 192 97 0 0 chr3 22174063 22174094 -205350484 + (CCA)n Simple_repeat Simple_repeat 3 33 0 2379 99 0 0 chr3 22174668 22174971 -205349607 + AluSg SINE Alu 1 303 -7 410 303 25 12 chr3 22175554 22175716 -205348862 + L1ME3A LINE L1 5493 5656 -514 209 274 119 0 chr3 22175718 22175802 -205348776 - MER5C DNA MER1_type -2 322 229 208 296 10 51 chr3 22175813 22175911 -205348667 - MER5C DNA MER1_type -200 124 31 302 296 42 58 chr3 22175923 22175977 -205348601 + L1ME3A LINE L1 5649 5702 -468 834 138 15 15 chr3 22175977 22176107 -205348471 + FLAM_C SINE Alu 4 133 0 302 296 42 58 chr3 22176107 22176292 -205348286 + L1ME3A LINE L1 5702 5884 -286 1456 189 118 38 chr3 22176666 22176836 -205347742 + MLT1C LTR MaLR 7 162 -305 444 104 0 0 chr3 22176836 22176903 -205347675 + (CA)n Simple_repeat Simple_repeat 2 68 0 1456 189 118 38 chr3 22176903 22177156 -205347422 + MLT1C LTR MaLR 162 464 -3 3156 214 29 18 chr3 22177174 22178050 -205346528 - L1M4c LINE L1 -4229 2155 1179 245 247 71 35 chr3 22178252 22178337 -205346241 + MIR SINE MIR 46 133 -129 577 159 11 0 chr3 22178337 22178425 -205346153 - MER81 DNA DNA 0 114 26 213 176 98 0 chr3 22178434 22178485 -205346093 + MIR SINE MIR 128 183 -79 1919 151 3 31 chr3 22179274 22179591 -205344987 - AluJo SINE Alu -2 310 3 23 0 0 0 chr3 22180352 22180375 -205344203 + AT_rich Low_complexity Low_complexity 1 23 0 29 28 0 0 chr3 22180642 22180678 -205343900 + AT_rich Low_complexity Low_complexity 1 36 0 1029 160 129 10 chr3 22180709 22180903 -205343675 - MER20 DNA MER1_type 0 219 3 288 252 19 39 chr3 22181446 22181549 -205343029 - MER5B DNA MER1_type -1 177 77 338 292 62 28 chr3 22181726 22181870 -205342708 + MIR3 SINE MIR 2 150 -58 2836 266 76 40 chr3 22182317 22183906 -205340672 - L1ME LINE L1 -4440 1640 6 344 316 35 0 chr3 22184534 22184648 -205339930 - MIR SINE MIR -142 120 3 2379 74 0 3 chr3 22184682 22185017 -205339561 - AluY SINE Alu 0 335 2 462 18 0 0 chr3 22185222 22185277 -205339301 + (TTG)n Simple_repeat Simple_repeat 1 55 0 1788 301 38 11 chr3 22186650 22187201 -205337377 - MLT1K LTR MaLR 0 588 23 556 206 0 64 chr3 22187717 22187858 -205336720 - MER94 DNA DNA -1 133 2 235 285 125 56 chr3 22188095 22188239 -205336339 - L2 LINE L2 -8 3264 3111 1908 117 33 4 chr3 22188466 22188807 -205335771 - AluSx SINE Alu 0 349 1 1243 218 29 3 chr3 22189193 22189509 -205335069 + MER33 DNA MER1_type 1 324 0 184 235 20 20 chr3 22190626 22190677 -205333901 - L2 LINE L2 -188 3084 3034 710 219 186 39 chr3 22190762 22191073 -205333505 - LTR16A LTR ERVL -6 444 88 203 282 117 91 chr3 22191174 22191472 -205333106 - L2 LINE L2 -16 3256 2951 382 305 84 21 chr3 22193409 22193585 -205330993 - L2 LINE L2 -43 3270 3083 972 212 150 27 chr3 22193585 22193878 -205330700 + MER58B DNA MER1_type 1 329 -12 532 293 56 8 chr3 22193892 22194210 -205330368 - L2 LINE L2 -196 3117 2778 2202 107 7 0 chr3 22194234 22194533 -205330045 - AluSx SINE Alu -11 301 1 980 238 62 40 chr3 22194584 22194937 -205329641 - L1ME3A LINE L1 -2 6168 5808 27 62 0 0 chr3 22195132 22195180 -205329398 + AT_rich Low_complexity Low_complexity 1 48 0 4736 216 77 31 chr3 22195196 22196653 -205327925 - L1M4 LINE L1 -2386 4258 2870 719 213 0 0 chr3 22196653 22196780 -205327798 - FLAM_A SINE Alu -6 127 1 4736 216 77 31 chr3 22196780 22197574 -205327004 - L1M4 LINE L1 -3774 2870 2114 1810 171 10 26 chr3 22197574 22197879 -205326699 + AluJb SINE Alu 1 300 -12 4736 216 77 31 chr3 22197879 22198556 -205326022 - L1M4 LINE L1 -4530 2114 1196 1462 156 8 4 chr3 22198555 22198793 -205325785 + L1P3 LINE L1 2 240 -6221 * 9543 66 0 0 chr3 22198795 22200799 -205323779 + L1PA6 LINE L1 4148 6146 -8 1955 209 61 69 chr3 22200817 22201487 -205323091 - L1M4 LINE L1 -5357 1185 521 459 213 8 16 chr3 22201628 22201750 -205322828 + Alu SINE Alu 183 303 -7 288 173 0 19 chr3 22201996 22202048 -205322530 + L2 LINE L2 3255 3305 -8 1354 245 118 44 chr3 22202048 22202849 -205321729 - L2 LINE L2 -8 3305 2438 361 280 32 0 chr3 22202875 22202968 -205321610 - MIR SINE MIR -61 147 52 256 327 0 19 chr3 22205015 22205119 -205319459 + L3 LINE CR1 987 1088 -489 824 190 42 53 chr3 22205330 22205593 -205318985 + L1ME LINE L1 5391 5650 -520 2220 63 7 7 chr3 22205679 22205984 -205318594 - AluY SINE Alu 0 305 1 322 196 36 63 chr3 22205989 22206114 -205318464 - MIR SINE MIR -68 140 31 659 248 41 111 chr3 22206273 22206700 -205317878 + L1ME4a LINE L1 4987 5384 -782 1888 165 0 13 chr3 22206708 22207024 -205317554 + AluJo SINE Alu 1 312 0 556 291 104 47 chr3 22207108 22207407 -205317171 + L1M4 LINE L1 58 373 -6169 295 191 20 35 chr3 22207765 22207971 -205316607 + G-rich Low_complexity Low_complexity 1 202 0 341 321 45 8 chr3 22208599 22208729 -205315849 + L1ME4a LINE L1 5658 5782 -339 2076 111 0 0 chr3 22208729 22208999 -205315579 + AluSg SINE Alu 35 304 -6 341 321 45 8 chr3 22208999 22209111 -205315467 + L1ME4a LINE L1 5782 5909 -212 188 246 116 0 chr3 22209398 22209467 -205315111 + MIR SINE MIR 48 124 -84 208 331 105 8 chr3 22209951 22210084 -205314494 - L3 LINE CR1 -223 1354 1209 913 122 0 0 chr3 22210793 22210924 -205313654 - FRAM SINE Alu -6 170 40 422 258 71 30 chr3 22211195 22211403 -205313175 + MIR SINE MIR 6 221 -41 1564 174 14 17 chr3 22211997 22212291 -205312287 - MLT1A1 LTR MaLR -65 300 8 331 272 160 16 chr3 22212403 22212528 -205312050 + MIR SINE MIR 69 211 -51 344 222 20 20 chr3 22212708 22212807 -205311771 + (CA)n Simple_repeat Simple_repeat 2 100 0 208 206 8 30 chr3 22212831 22212962 -205311616 + (CA)n Simple_repeat Simple_repeat 1 128 0 215 378 96 22 chr3 22212974 22213109 -205311469 + L3 LINE CR1 168 312 -1265 249 211 42 0 chr3 22213142 22213213 -205311365 - MLT1G3 LTR MaLR 0 595 522 309 151 0 0 chr3 22213214 22213267 -205311311 + (TTG)n Simple_repeat Simple_repeat 2 54 0 914 222 89 31 chr3 22213293 22213691 -205310887 - MLT1G3 LTR MaLR -106 436 4 336 288 283 19 chr3 22213765 22213977 -205310601 + L3 LINE CR1 430 697 -880 199 283 40 30 chr3 22217212 22217311 -205307267 - L2 LINE L2 -556 2758 2659 188 200 0 0 chr3 22219415 22219429 -205305149 + L2 LINE L2 3262 3275 -38 371 303 27 38 chr3 22219429 22219611 -205304967 + MIR3 SINE MIR 2 180 -63 1502 220 136 22 chr3 22219704 22219730 -205304848 - MLT1C LTR MaLR -7 460 438 1625 181 67 6 chr3 22219730 22220073 -205304505 + MLT1A1 LTR MaLR 2 365 0 1502 220 136 22 chr3 22220073 22220459 -205304119 - MLT1C LTR MaLR -29 438 1 306 237 16 21 chr3 22222111 22222341 -205302237 + GA-rich Low_complexity Low_complexity 1 228 0 1094 228 166 15 chr3 22224187 22224582 -205299996 - MER41B LTR ERV1 -10 560 173 208 174 0 65 chr3 22224649 22224695 -205299883 - MIR3 SINE MIR -54 154 112 527 293 11 21 chr3 22224799 22224990 -205299588 + L1ME LINE L1 3 191 -5928 1160 240 81 17 chr3 22225013 22225656 -205298922 + L1ME LINE L1 4879 5573 -576 2342 96 0 7 chr3 22226439 22226742 -205297836 + AluSq SINE Alu 1 301 -12 1291 161 10 0 chr3 22227103 22227296 -205297282 + AluJb SINE Alu 82 276 -36 326 322 88 22 chr3 22227345 22227662 -205296916 + HAL1 LINE L1 1218 1555 -952 651 276 87 54 chr3 22227960 22228013 -205296565 + L1MEd LINE L1 2125 2175 -3954 2861 161 8 0 chr3 22228013 22228511 -205296067 + L1MB8 LINE L1 5675 6176 -2 651 276 87 54 chr3 22228511 22228841 -205295737 + L1MEd LINE L1 2175 2493 -3636 837 196 0 0 chr3 22228841 22228974 -205295604 - FLAM_A SINE Alu 0 133 1 651 276 87 54 chr3 22228974 22229256 -205295322 + L1MEd LINE L1 2493 2813 -3316 524 232 0 7 chr3 22229279 22229417 -205295161 + L1MEd LINE L1 2875 3011 -3118 819 266 143 26 chr3 22229649 22230033 -205294545 + MLT1J2 LTR MaLR 1 429 -21 1992 110 25 3 chr3 22230228 22230510 -205294068 + AluJb SINE Alu 12 299 -13 2422 145 70 2 chr3 22230666 22231067 -205293511 + MSTA LTR MaLR 1 428 0 968 199 23 5 chr3 22231109 22231330 -205293248 - L1ME3A LINE L1 -213 5957 5733 667 295 79 61 chr3 22231326 22231733 -205292845 + L1MEd LINE L1 3618 4043 -2086 * 2367 111 0 0 chr3 22231733 22232039 -205292539 - AluSq SINE Alu -6 307 2 667 295 79 61 chr3 22232039 22232303 -205292275 + L1MEd LINE L1 4043 4301 -1828 412 313 36 26 chr3 22232599 22232794 -205291784 + MIR SINE MIR 59 255 -7 331 255 88 0 chr3 22233339 22233441 -205291137 - MER112 DNA MER1_type -6 254 144 1125 169 0 6 chr3 22233497 22233680 -205290898 + AluSg/x SINE Alu 118 299 -11 285 274 106 9 chr3 22233695 22233808 -205290770 + MIR SINE MIR 70 193 -69 245 241 0 0 chr3 22233874 22233928 -205290650 - MER112 DNA MER1_type -206 54 1 226 324 37 9 chr3 22234370 22234478 -205290100 - MIR SINE MIR -65 143 33 369 304 97 27 chr3 22234558 22234857 -205289721 + L2 LINE L2 2826 3145 -168 458 286 111 32 chr3 22234905 22235094 -205289484 + MIR SINE MIR 53 256 -6 3108 152 136 57 chr3 22235111 22235663 -205288915 + L1MB8 LINE L1 5302 5936 -242 2108 95 33 16 chr3 22235663 22235969 -205288609 - AluSx SINE Alu -1 311 1 3108 152 136 57 chr3 22235969 22236201 -205288377 + L1MB8 LINE L1 5936 6148 -30 634 218 155 0 chr3 22236205 22236347 -205288231 - MIR SINE MIR -86 176 13 225 378 24 8 chr3 22236486 22236613 -205287965 - MIR3 SINE MIR -42 166 38 183 329 24 0 chr3 22236659 22236741 -205287837 - MIR3 SINE MIR -43 165 82 218 235 99 25 chr3 22236746 22236827 -205287751 + MIR3 SINE MIR 115 201 -7 332 200 14 0 chr3 22237572 22237642 -205286936 - MLT1K LTR MaLR -373 215 145 227 191 103 15 chr3 22237736 22237804 -205286774 + MIR3 SINE MIR 81 154 -54 224 333 61 18 chr3 22237937 22238051 -205286527 - MIR SINE MIR -15 247 129 1439 162 50 14 chr3 22238051 22238329 -205286249 - L1MC1 LINE L1 -5 6328 6041 302 248 109 10 chr3 22238339 22238440 -205286138 - L2 LINE L2 -522 2792 2682 432 319 117 16 chr3 22238458 22238706 -205285872 - L2 LINE L2 -737 2577 2305 2071 145 0 0 chr3 22239000 22239303 -205285275 - AluSx SINE Alu -9 303 1 337 246 68 0 chr3 22239361 22239479 -205285099 - MER113 DNA MER1_type? -92 429 304 1278 157 8 58 chr3 22239482 22239724 -205284854 - AluJo SINE Alu 0 312 83 755 259 152 7 chr3 22239727 22239997 -205284581 - MER113 DNA MER1_type? -207 314 6 181 258 0 61 chr3 22240814 22240880 -205283698 - MIR SINE MIR 0 262 201 2332 90 0 0 chr3 22240896 22241185 -205283393 + AluSx SINE Alu 12 300 -12 691 294 6 6 chr3 22241197 22241377 -205283201 - MIR SINE MIR -49 213 34 189 0 0 0 chr3 22242253 22242274 -205282304 + (A)n Simple_repeat Simple_repeat 1 21 0 417 286 16 8 chr3 22242700 22242826 -205281752 - L3 LINE CR1 -71 1506 1380 495 262 84 21 chr3 22242846 22243037 -205281541 - L2 LINE L2 -64 3249 3047 184 323 71 0 chr3 22243035 22243134 -205281444 - L3 LINE CR1 -193 1384 1279 * 329 360 91 28 chr3 22243262 22243515 -205281063 - L3 LINE CR1 -563 1014 746 627 291 70 62 chr3 22243566 22244304 -205280274 + L1ME4a LINE L1 5255 6013 -108 346 278 103 0 chr3 22244809 22244935 -205279643 + MER117 DNA MER1_type 4 142 -55 345 320 203 0 chr3 22245000 22245153 -205279425 - MER5A DNA MER1_type -2 187 4 259 265 271 0 chr3 22245214 22245365 -205279213 - MIR SINE MIR -10 252 61 233 299 23 23 chr3 22245936 22246023 -205278555 + MIR SINE MIR 62 148 -114 741 223 36 21 chr3 22246024 22246217 -205278361 - L2 LINE L2 0 3313 3118 323 172 16 0 chr3 22246556 22246620 -205277958 + LTR16A1 LTR ERVL 65 129 -328 446 244 62 12 chr3 22246674 22246834 -205277744 + LTR16A1 LTR ERVL 226 393 -64 512 218 0 0 chr3 22246910 22246997 -205277581 - MER81 DNA DNA -22 92 6 190 310 212 9 chr3 22247027 22247140 -205277438 - L2 LINE L2 0 3313 3178 202 189 0 0 chr3 22247372 22247409 -205277169 + MIR SINE MIR 103 139 -123 377 220 70 20 chr3 22247587 22247687 -205276891 - MIR SINE MIR -98 164 60 876 274 29 4 chr3 22247833 22248074 -205276504 + MIR SINE MIR 13 259 -3 255 179 54 0 chr3 22248104 22248160 -205276418 + L1ME LINE L1 5714 5772 -349 667 291 49 4 chr3 22248168 22248415 -205276163 + L1M4 LINE L1 4722 4979 -1167 182 277 62 0 chr3 22249142 22249207 -205275371 + MIR SINE MIR 106 174 -88 207 262 16 0 chr3 22249223 22249284 -205275294 - L2 LINE L2 -1 3271 3210 654 219 34 51 chr3 22249284 22249462 -205275116 + MER45A DNA AcHobo 3 177 -1 313 277 143 0 chr3 22249729 22249841 -205274737 + MIR SINE MIR 17 144 -118 183 238 0 0 chr3 22250212 22250254 -205274324 - L2 LINE L2 -15 3298 3257 401 355 24 5 chr3 22250267 22250478 -205274100 - MIR SINE MIR 0 262 48 247 242 275 0 chr3 22251720 22251840 -205272738 + MIR SINE MIR 106 258 -4 906 266 98 21 chr3 22251910 22252377 -205272201 - L2 LINE L2 -7 3306 2804 266 324 7 47 chr3 22252707 22252855 -205271723 + L2 LINE L2 2651 2792 -522 259 374 113 4 chr3 22253992 22254230 -205270348 + L2 LINE L2 2915 3178 -94 481 269 46 0 chr3 22254252 22254382 -205270196 - MIR SINE MIR -68 194 59 221 280 7 126 chr3 22255066 22255209 -205269369 - MIR SINE MIR -11 251 126 684 254 29 57 chr3 22255253 22255462 -205269116 + MIR SINE MIR 59 261 -1 180 178 267 0 chr3 22255464 22255509 -205269069 - MIR SINE MIR -68 140 84 259 200 0 0 chr3 22256112 22256162 -205268416 + L2 LINE L2 3264 3313 0 421 294 104 6 chr3 22256222 22256385 -205268193 + MIR SINE MIR 3 181 -81 390 254 123 0 chr3 22256919 22257033 -205267545 + MIR SINE MIR 93 220 -42 23 0 0 0 chr3 22257544 22257567 -205267011 + AT_rich Low_complexity Low_complexity 1 23 0 380 293 0 17 chr3 22257654 22257835 -205266743 + (CCA)n Simple_repeat Simple_repeat 1 178 0 520 298 6 6 chr3 22257940 22258118 -205266460 + (CCA)n Simple_repeat Simple_repeat 3 180 0 223 246 33 0 chr3 22258249 22258310 -205266268 - MIR3 SINE MIR -21 187 125 181 288 0 38 chr3 22258342 22258422 -205266156 + L2 LINE L2 2898 2974 -298 287 167 0 0 chr3 22258670 22258724 -205265854 + L2 LINE L2 3012 3065 -248 252 132 309 0 chr3 22258743 22258811 -205265767 - MER5A DNA MER1_type -34 155 67 239 107 0 53 chr3 22259315 22259390 -205265188 + (CCCCCG)n Simple_repeat Simple_repeat 3 73 0 42 36 0 0 chr3 22259441 22259497 -205265081 + GC_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr3 22259551 22259573 -205265005 + GC_rich Low_complexity Low_complexity 1 22 0 408 40 0 0 chr3 22260727 22260777 -205263801 + (TG)n Simple_repeat Simple_repeat 2 51 0 490 275 186 31 chr3 22261403 22261596 -205262982 + MIR SINE MIR 40 262 0 * 699 319 64 8 chr3 22261580 22261815 -205262763 - MIR SINE MIR 0 262 15 482 313 28 11 chr3 22261892 22262071 -205262507 - MIR SINE MIR -80 182 1 539 244 7 7 chr3 22262376 22262511 -205262067 - MIR3 SINE MIR -50 158 24 1958 256 136 26 chr3 22263253 22264294 -205260284 + L2 LINE L2 2087 3308 -5 266 316 35 18 chr3 22264544 22264658 -205259920 + MIR SINE MIR 32 147 -61 531 198 182 27 chr3 22265156 22265343 -205259235 - MIR SINE MIR -16 246 31 1343 166 42 7 chr3 22265694 22265924 -205258654 + MER33 DNA MER1_type 1 244 -2341 2170 138 0 0 chr3 22265924 22266221 -205258357 - AluSq SINE Alu -16 297 1 1343 166 42 7 chr3 22266221 22266274 -205258304 + MER33 DNA MER1_type 244 294 -30 272 279 0 0 chr3 22266731 22266799 -205257779 + L2 LINE L2 2991 3058 -255 392 282 5 38 chr3 22270352 22270519 -205254059 + MIR3 SINE MIR 3 169 -63 2533 88 0 0 chr3 22270545 22270853 -205253725 + AluSc SINE Alu 1 308 -1 511 364 21 4 chr3 22271995 22272231 -205252347 - L3 LINE CR1 -87 1490 1251 451 314 90 0 chr3 22272241 22272397 -205252181 - MIR3 SINE MIR -6 202 33 344 282 61 8 chr3 22272425 22272556 -205252022 - MER91C DNA MER1_type -2 138 1 233 236 14 42 chr3 22272668 22272740 -205251838 - MIR SINE MIR -19 243 174 241 225 166 33 chr3 22273261 22273375 -205251203 + MIR3 SINE MIR 39 167 -41 1097 222 138 11 chr3 22273401 22273757 -205250821 + MER113 DNA MER1_type? 46 446 -75 1540 151 6 130 chr3 22274049 22274394 -205250184 + AluJo SINE Alu 1 302 -10 330 169 0 0 chr3 22274957 22275022 -205249556 + CT-rich Low_complexity Low_complexity 1 65 0 663 261 174 5 chr3 22275155 22275373 -205249205 + MIR SINE MIR 8 262 0 289 346 33 26 chr3 22275779 22275967 -205248611 - MIR3 SINE MIR -54 154 12 1789 58 31 4 chr3 22276008 22276233 -205248345 - AluY SINE Alu -2 309 79 1838 128 103 0 chr3 22277550 22277823 -205246755 - AluSx SINE Alu -11 301 1 792 267 142 31 chr3 22279530 22279953 -205244625 - L2 LINE L2 0 3313 2844 638 329 31 13 chr3 22281004 22281232 -205243346 - MIR SINE MIR -14 248 17 187 295 115 0 chr3 22281317 22281395 -205243183 - MIR SINE MIR -67 141 55 231 247 79 56 chr3 22282199 22282288 -205242290 + L3 LINE CR1 1378 1468 -109 1065 191 17 33 chr3 22282948 22283189 -205241389 + MIR SINE MIR 7 243 -19 287 258 75 11 chr3 22283651 22283744 -205240834 - MIR SINE MIR -54 208 110 2101 126 0 7 chr3 22283945 22284259 -205240319 + AluSx SINE Alu 1 312 0 236 259 49 5 chr3 22284731 22284810 -205239768 - MIR SINE MIR -72 136 47 209 200 18 0 chr3 22285356 22285411 -205239167 - MIR SINE MIR -57 151 96 190 313 36 51 chr3 22285611 22285806 -205238772 - L2 LINE L2 -244 3028 2837 181 319 106 0 chr3 22286506 22286619 -205237959 + MIR3 SINE MIR 66 190 -18 1972 231 102 26 chr3 22286623 22287203 -205237375 - MLT1E2 LTR MaLR -2 624 1 916 239 40 78 chr3 22287219 22287541 -205237037 - MLT1E2-int LTR MaLR -2 1369 1060 305 298 32 11 chr3 22287941 22288035 -205236543 + MIR SINE MIR 91 186 -76 2329 71 7 3 chr3 22288380 22288696 -205235882 + AluY SINE Alu 1 317 0 1451 159 6 130 chr3 22288924 22289269 -205235309 + AluJo SINE Alu 1 302 -10 330 169 0 0 chr3 22289832 22289897 -205234681 + CT-rich Low_complexity Low_complexity 1 65 0 663 261 174 5 chr3 22290030 22290248 -205234330 + MIR SINE MIR 8 262 0 362 352 34 12 chr3 22290654 22290839 -205233739 - MIR3 SINE MIR -54 154 12 2468 87 0 6 chr3 22290880 22291192 -205233386 - AluSx SINE Alu -2 310 1 1175 226 25 31 chr3 22291978 22292301 -205232277 - L1ME LINE L1 -576 5573 5253 932 243 82 3 chr3 22292316 22292621 -205231957 - L1ME LINE L1 -922 5207 4879 552 293 11 21 chr3 22292644 22292835 -205231743 - L1ME LINE L1 -5928 191 3 201 194 0 0 chr3 22292939 22292975 -205231603 + MIR SINE MIR 112 147 -61 1129 222 166 15 chr3 22293052 22293447 -205231131 + MER41B LTR ERV1 173 476 -10 1748 202 90 12 chr3 22294216 22294626 -205229952 + MER45B DNA AcHobo 205 646 -394 340 411 45 25 chr3 22294633 22295142 -205229436 + L1M2 LINE L1 10 528 -6321 457 186 0 12 chr3 22295179 22295265 -205229313 + L1 LINE L1 4169 4253 -1893 201 229 42 0 chr3 22297772 22297820 -205226758 + L2 LINE L2 3204 3253 -19 2297 91 0 29 chr3 22298257 22298565 -205226013 - AluSx SINE Alu -13 299 1 443 244 85 30 chr3 22298571 22298738 -205225840 - MIR SINE MIR -52 210 37 459 0 0 0 chr3 22298788 22298839 -205225739 + (TA)n Simple_repeat Simple_repeat 2 52 0 278 291 12 0 chr3 22298839 22298925 -205225653 - MER5A DNA MER1_type -53 136 50 583 309 22 6 chr3 22299185 22299366 -205225212 + MIR SINE MIR 38 221 -41 313 293 93 0 chr3 22301547 22301687 -205222891 + MIR SINE MIR 108 260 -2 496 273 79 32 chr3 22301773 22301989 -205222589 - MIR SINE MIR -21 241 16 774 240 57 21 chr3 22302123 22302315 -205222263 - MIR SINE MIR -44 218 20 220 329 0 24 chr3 22302415 22302497 -205222081 + MIR3 SINE MIR 77 156 -52 21 71 0 0 chr3 22303217 22303259 -205221319 + AT_rich Low_complexity Low_complexity 1 42 0 235 213 16 66 chr3 22303265 22303326 -205221252 - MER69 DNA AcHobo -2449 77 20 183 143 18 89 chr3 22303333 22303389 -205221189 - L2 LINE L2 -217 3055 3004 449 284 12 15 chr3 22304039 22304246 -205220332 + MIR SINE MIR 78 253 -9 300 246 354 6 chr3 22304261 22304436 -205220142 + MIR SINE MIR 21 256 -6 184 143 0 0 chr3 22304806 22304834 -205219744 - MIR SINE MIR -63 145 118 202 255 39 0 chr3 22305298 22305349 -205219229 - L2 LINE L2 -211 3061 3009 396 172 172 10 chr3 22305595 22305694 -205218884 - MIR3 SINE MIR -49 159 45 748 248 9 51 chr3 22305801 22306015 -205218563 - MIR SINE MIR -56 206 2 3450 159 56 21 chr3 22306462 22307177 -205217401 + L1MB7 LINE L1 5445 6184 0 279 0 0 0 chr3 22308204 22308235 -205216343 + (T)n Simple_repeat Simple_repeat 1 31 0 288 227 136 0 chr3 22308664 22308730 -205215848 - MIR SINE MIR -107 155 81 1858 163 7 13 chr3 22308935 22309283 -205215295 - AluJo SINE Alu 0 312 1 7207 130 16 28 chr3 22309288 22311704 -205212874 - L1MA5A LINE L1 0 6297 3895 1543 169 41 37 chr3 22311721 22312016 -205212562 - AluJb SINE Alu -12 300 5 555 234 130 61 chr3 22312371 22312602 -205211976 - MIR SINE MIR -3 259 13 282 262 24 12 chr3 22312803 22312887 -205211691 + (TGGG)n Simple_repeat Simple_repeat 2 86 0 558 133 0 0 chr3 22312910 22313000 -205211578 + (TGGA)n Simple_repeat Simple_repeat 2 91 0 226 213 40 53 chr3 22313124 22313199 -205211379 + L2 LINE L2 3198 3271 -1 1066 130 44 143 chr3 22313686 22313840 -205210738 - L1MA7 LINE L1 -4 6287 6183 2019 156 0 9 chr3 22313840 22314155 -205210423 + AluSx SINE Alu 1 312 0 1066 130 44 143 chr3 22314155 22314325 -205210253 - L1MA7 LINE L1 -108 6183 5998 22 0 0 0 chr3 22315210 22315232 -205209346 + AT_rich Low_complexity Low_complexity 1 22 0 1564 205 0 17 chr3 22315259 22315556 -205209022 + AluJo SINE Alu 3 294 -18 250 284 193 0 chr3 22315878 22315966 -205208612 - MIR SINE MIR -139 123 19 346 329 80 13 chr3 22316412 22316637 -205207941 - L2 LINE L2 -557 2757 2518 196 260 151 0 chr3 22317825 22317898 -205206680 - L2 LINE L2 -559 2755 2672 357 268 21 10 chr3 22317959 22318056 -205206522 + L2 LINE L2 3168 3265 -7 218 240 38 0 chr3 22318482 22318571 -205206007 - L2 LINE L2 -326 2946 2852 246 167 241 0 chr3 22319141 22319195 -205205383 + MIR SINE MIR 86 152 -110 261 277 9 54 chr3 22320038 22320150 -205204428 + C-rich Low_complexity Low_complexity 6 112 0 740 257 32 18 chr3 22320161 22320379 -205204199 - MIR SINE MIR -29 233 13 210 293 146 16 chr3 22320760 22320883 -205203695 + MIR SINE MIR 121 259 -3 500 259 80 20 chr3 22321049 22321252 -205203326 + MIR SINE MIR 19 236 -26 470 347 77 4 chr3 22321849 22322097 -205202481 - L1MC4a LINE L1 -1943 5865 5600 386 222 52 185 chr3 22323349 22323578 -205201000 - L2 LINE L2 -4 3309 3051 2205 117 0 0 chr3 22323578 22323901 -205200677 + AluY SINE Alu 1 323 0 386 222 52 185 chr3 22323901 22323990 -205200588 - L2 LINE L2 -262 3051 2952 3362 195 11 1 chr3 22323990 22324646 -205199932 - L1MB3 LINE L1 -7 6176 5515 386 222 52 185 chr3 22324646 22324882 -205199696 - L2 LINE L2 -361 2952 2826 355 319 226 12 chr3 22325575 22325898 -205198680 + L2 LINE L2 2922 3313 0 294 265 191 34 chr3 22326484 22326631 -205197947 + MER5A DNA MER1_type 11 180 -9 4784 172 14 43 chr3 22326900 22327843 -205196735 - MER49 LTR ERV1 -2 921 7 205 321 50 13 chr3 22327916 22328075 -205196503 - L2 LINE L2 -209 3063 2899 2310 91 24 0 chr3 22328289 22328587 -205195991 - AluSx SINE Alu -7 305 1 1534 193 22 19 chr3 22328593 22328802 -205195776 + L1MB1 LINE L1 5736 5948 -241 1692 126 103 19 chr3 22328802 22329073 -205195505 + AluJo SINE Alu 1 294 -18 1534 193 22 19 chr3 22329073 22329174 -205195404 + L1MB1 LINE L1 5948 6047 -142 244 323 0 0 chr3 22329211 22329276 -205195302 - MIR SINE MIR -108 100 36 1625 196 50 12 chr3 22330881 22331087 -205193491 - Charlie1 DNA MER1_type 0 2761 2564 243 0 0 0 chr3 22331087 22331114 -205193464 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1625 196 50 12 chr3 22331114 22331311 -205193267 - Charlie1 DNA MER1_type -197 2564 2343 313 274 89 15 chr3 22332088 22332223 -205192355 - MIR3 SINE MIR -59 149 5 530 271 43 24 chr3 22332296 22332332 -205192246 - L2 LINE L2 -182 3131 3097 760 206 21 82 chr3 22332332 22332565 -205192013 + MER20 DNA MER1_type 1 219 0 530 271 43 24 chr3 22332565 22332735 -205191843 - L2 LINE L2 -216 3097 2921 312 316 33 33 chr3 22332773 22332925 -205191653 - MIR SINE MIR -110 152 1 512 247 64 82 chr3 22333061 22333291 -205191287 - MIR SINE MIR 0 262 36 2118 82 67 11 chr3 22333291 22333573 -205191005 - AluSg SINE Alu -12 298 1 512 247 64 82 chr3 22333573 22333609 -205190969 - MIR SINE MIR -226 36 1 209 33 33 0 chr3 22334132 22334162 -205190416 + (CTCA)n Simple_repeat Simple_repeat 2 32 0 476 288 157 36 chr3 22334187 22334461 -205190117 - L2 LINE L2 -50 3222 2916 447 235 145 66 chr3 22334545 22334631 -205189947 - MIR SINE MIR -17 245 167 1934 157 0 37 chr3 22334631 22334955 -205189623 + AluJo SINE Alu 1 312 0 447 235 145 66 chr3 22334955 22335034 -205189544 - MIR SINE MIR -95 167 67 230 238 0 16 chr3 22335658 22335721 -205188857 + (TG)n Simple_repeat Simple_repeat 1 62 0 336 228 129 0 chr3 22336294 22336395 -205188183 - MIR SINE MIR -65 143 30 2415 94 0 0 chr3 22336982 22337281 -205187297 + AluSx SINE Alu 1 299 -13 691 213 71 30 chr3 22337726 22337895 -205186683 + MER58C DNA MER1_type 40 215 0 268 317 19 0 chr3 22337955 22338059 -205186519 + (TCCA)n Simple_repeat Simple_repeat 1 106 0 245 208 13 0 chr3 22338085 22338162 -205186416 + (TCCA)n Simple_repeat Simple_repeat 3 80 0 220 324 123 39 chr3 22338418 22338622 -205185956 - L2 LINE L2 -223 3049 2829 413 275 170 5 chr3 22338937 22339137 -205185441 + L2 LINE L2 2804 3036 -277 974 199 36 55 chr3 22339137 22339336 -205185242 - MLT1G1 LTR MaLR -26 557 367 1977 174 79 15 chr3 22339336 22339739 -205184839 + LTR3 LTR ERVK 1 429 -3 1856 174 67 11 chr3 22339752 22340109 -205184469 - LTR3 LTR ERVK -55 377 1 1861 226 10 13 chr3 22340112 22340501 -205184077 - MLT1G1 LTR MaLR -207 388 1 731 290 74 30 chr3 22340521 22340859 -205183719 - MLT1J LTR MaLR 0 511 159 318 256 157 31 chr3 22340908 22341163 -205183415 - MLT1H LTR MaLR -120 289 40 1527 221 62 44 chr3 22341272 22341769 -205182809 - L1M4 LINE L1 -3186 2960 2455 384 301 90 8 chr3 22341770 22341903 -205182675 + L2 LINE L2 3127 3270 -2 960 161 56 0 chr3 22341963 22342124 -205182454 + FAM SINE Alu 1 170 -5 289 324 110 45 chr3 22342159 22342449 -205182129 - L2 LINE L2 -61 3211 2903 1835 158 17 24 chr3 22342450 22342748 -205181830 + AluJo SINE Alu 1 296 -16 223 271 0 0 chr3 22342748 22342796 -205181782 - MER5B DNA MER1_type -54 124 77 184 379 68 15 chr3 22343220 22343352 -205181226 - L2 LINE L2 -157 3115 2977 833 191 21 46 chr3 22343399 22343593 -205180985 + MER5A DNA MER1_type 1 189 0 1906 250 149 16 chr3 22343764 22344544 -205180034 - L1ME3 LINE L1 -72 6090 5204 312 282 177 62 chr3 22344545 22344556 -205180022 + L2 LINE L2 2862 2870 -402 472 212 0 9 chr3 22344556 22344669 -205179909 - L1MB8 LINE L1 0 6178 6067 312 282 177 62 chr3 22344669 22345028 -205179550 + L2 LINE L2 2870 3271 -1 357 228 79 20 chr3 22345485 22345586 -205178992 - MIR SINE MIR -108 154 48 363 203 0 0 chr3 22346445 22346524 -205178054 + CT-rich Low_complexity Low_complexity 1 79 0 1802 171 26 16 chr3 22346760 22347065 -205177513 - AluJb SINE Alu -4 308 1 183 321 43 112 chr3 22347065 22347102 -205177476 + L3 LINE CR1 1369 1407 -170 2364 112 0 3 chr3 22347102 22347414 -205177164 + AluSq SINE Alu 1 311 -2 183 321 43 112 chr3 22347414 22347563 -205177015 + L3 LINE CR1 1407 1542 -35 4934 156 24 37 chr3 22347733 22347902 -205176676 - L1MA4 LINE L1 0 6300 6130 197 33 33 0 chr3 22347902 22347932 -205176646 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1745 177 18 3 chr3 22347932 22348214 -205176364 - AluJo SINE Alu -26 286 1 4934 156 24 37 chr3 22348214 22348309 -205176269 - L1MA4 LINE L1 -169 6131 6036 2332 111 0 9 chr3 22348309 22348624 -205175954 - AluSx SINE Alu 0 312 1 4934 156 24 37 chr3 22348624 22349072 -205175506 - L1MA4 LINE L1 -264 6036 5584 1649 131 32 12 chr3 22349072 22349324 -205175254 - AluJo SINE Alu -2 310 54 4934 156 24 37 chr3 22349324 22350106 -205174472 - L1MA4 LINE L1 -716 5584 4819 1631 184 28 0 chr3 22350128 22350410 -205174168 - AluJb SINE Alu 0 312 23 3308 144 15 7 chr3 22350426 22351037 -205173541 + L1 LINE L1 4216 4831 -1315 2400 94 0 0 chr3 22351038 22351337 -205173241 - AluSp SINE Alu -14 299 1 25 0 0 0 chr3 22351342 22351367 -205173211 + AT_rich Low_complexity Low_complexity 1 25 0 464 284 88 7 chr3 22352302 22352450 -205172128 - MIR SINE MIR -87 175 16 347 296 138 7 chr3 22353674 22354023 -205170555 + L2 LINE L2 1857 2296 -1018 1370 269 122 2 chr3 22354153 22354570 -205170008 - L2 LINE L2 0 3313 2847 243 248 284 18 chr3 22354656 22354765 -205169813 + L2 LINE L2 3133 3270 -2 328 260 30 60 chr3 22355375 22355511 -205169067 - MIR SINE MIR -44 164 32 196 232 116 54 chr3 22355744 22355856 -205168722 + MIR SINE MIR 34 152 -56 345 343 35 12 chr3 22355863 22356032 -205168546 + MER5A DNA MER1_type 16 188 -1 257 340 0 0 chr3 22356182 22356276 -205168302 + MER117 DNA MER1_type 68 161 -36 283 329 100 68 chr3 22356364 22356566 -205168012 - L2 LINE L2 -18 3254 3060 2349 116 0 0 chr3 22356566 22356867 -205167711 + AluSx SINE Alu 1 301 -11 283 329 100 68 chr3 22356867 22357074 -205167504 - L2 LINE L2 -212 3060 2832 788 175 31 6 chr3 22357640 22357800 -205166778 - L1MB3 LINE L1 -62 6121 5958 502 200 67 7 chr3 22357811 22357921 -205166657 - L1MC3 LINE L1 0 7785 7664 198 0 0 0 chr3 22357921 22357943 -205166635 + (TTA)n Simple_repeat Simple_repeat 3 24 0 502 200 67 7 chr3 22357943 22357967 -205166611 - L1MC3 LINE L1 -121 7664 7643 * 2930 28 0 6 chr3 22357945 22358301 -205166277 - L1PA3 LINE L1 -26 6129 5776 * 4778 200 28 27 chr3 22358283 22359397 -205165181 - L1MC3 LINE L1 -115 7670 6556 632 164 115 8 chr3 22359397 22359519 -205165059 - FLAM_C SINE Alu -7 136 2 182 116 23 0 chr3 22359520 22359563 -205165015 + T-rich Low_complexity Low_complexity 1 44 0 595 139 139 0 chr3 22359564 22359693 -205164885 - L1MC3 LINE L1 -1224 6561 6415 * 655 263 60 42 chr3 22359686 22360017 -205164561 - L1MCc LINE L1 -4750 2372 2036 * 1393 253 75 52 chr3 22360015 22360798 -205163780 - L1MCc LINE L1 -4887 1536 920 1637 241 32 5 chr3 22361116 22361523 -205163055 - L1MCc LINE L1 -5988 435 18 795 127 25 45 chr3 22363012 22363169 -205161409 - Ricksha DNA DNA -1 3253 3100 2158 93 21 4 chr3 22363171 22363482 -205161096 + AluSg SINE Alu 1 316 0 324 161 0 0 chr3 22363488 22363550 -205161028 + (TTCA)n Simple_repeat Simple_repeat 4 65 0 285 29 0 0 chr3 22363668 22363702 -205160876 + (TTCA)n Simple_repeat Simple_repeat 2 35 0 2124 90 32 0 chr3 22363702 22363979 -205160599 - AluSp SINE Alu -26 287 2 3303 143 11 55 chr3 22363979 22364461 -205160117 - Ricksha DNA DNA -145 3106 2657 2297 105 6 22 chr3 22364461 22364774 -205159804 - AluSg SINE Alu 0 310 3 3303 143 11 55 chr3 22364774 22364926 -205159652 - Ricksha DNA DNA -594 2657 2500 1114 190 22 9 chr3 22364924 22365132 -205159446 - Ricksha DNA DNA -844 410 206 * 504 244 96 0 chr3 22365132 22365247 -205159331 - FLAM_A SINE Alu -7 126 1 1114 190 22 9 chr3 22365247 22365352 -205159226 - Ricksha DNA DNA -1048 206 1 318 282 81 27 chr3 22365881 22366030 -205158548 - MIR3 SINE MIR -36 172 16 240 260 221 31 chr3 22366346 22366473 -205158105 - L2 LINE L2 -14 3258 3108 331 321 50 0 chr3 22366624 22366764 -205157814 - L2 LINE L2 -228 3044 2898 244 286 143 17 chr3 22367211 22367330 -205157248 - L3 LINE CR1 -50 1527 1394 199 266 230 44 chr3 22367311 22367424 -205157154 - L2 LINE L2 0 3272 3139 * 2171 122 0 3 chr3 22367467 22367762 -205156816 + AluSg SINE Alu 1 294 -16 226 292 179 36 chr3 22367805 22368000 -205156578 + MIR SINE MIR 36 258 -4 315 261 14 11 chr3 22368194 22368299 -205156279 + MIR SINE MIR 40 147 -61 311 321 42 63 chr3 22369430 22369620 -205154958 + MIR SINE MIR 60 245 -17 543 235 37 0 chr3 22369660 22369796 -205154782 + MER58A DNA MER1_type 1 141 0 201 326 54 22 chr3 22370923 22371015 -205153563 - MIR SINE MIR -118 144 50 360 242 126 0 chr3 22371139 22371234 -205153344 - L2 LINE L2 -2 3311 3205 1739 256 24 28 chr3 22371264 22371796 -205152782 - L1ME2 LINE L1 -9 6155 5626 2196 154 104 9 chr3 22372368 22372821 -205151757 - L1MB3 LINE L1 0 6183 5688 1953 164 19 43 chr3 22374011 22374049 -205150529 - MLT1A1 LTR MaLR 0 365 328 2545 68 0 0 chr3 22374049 22374358 -205150220 + AluY SINE Alu 1 309 -2 1953 164 19 43 chr3 22374358 22374691 -205149887 - MLT1A1 LTR MaLR -37 328 3 844 159 0 0 chr3 22375091 22375217 -205149361 + FLAM_C SINE Alu 5 130 -3 269 241 111 28 chr3 22375461 22375569 -205149009 - MIR SINE MIR -144 118 2 242 239 42 14 chr3 22375592 22375663 -205148915 - L2 LINE L2 -181 3091 3019 186 286 83 24 chr3 22376366 22376450 -205148128 - MIR SINE MIR -70 192 104 220 229 33 16 chr3 22379033 22379094 -205145484 + CT-rich Low_complexity Low_complexity 5 66 0 2424 88 0 7 chr3 22379532 22379840 -205144738 + AluSc SINE Alu 1 306 -3 393 277 125 40 chr3 22379904 22380128 -205144450 - L1MC4a LINE L1 -1757 6051 5809 388 301 15 29 chr3 22380132 22380268 -205144310 - MIR SINE MIR -115 147 14 804 125 58 0 chr3 22382056 22382176 -205142402 + AluJb SINE Alu 1 127 -185 261 0 0 0 chr3 22382177 22382206 -205142372 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 1700 174 6 35 chr3 22382462 22382644 -205141934 - AluJo SINE Alu -5 307 136 2529 81 3 0 chr3 22382644 22382951 -205141627 - AluSc SINE Alu -1 308 1 1700 174 6 35 chr3 22382951 22383084 -205141494 - AluJo SINE Alu -176 136 1 25 51 0 0 chr3 22383097 22383136 -205141442 + AT_rich Low_complexity Low_complexity 1 39 0 2085 141 7 0 chr3 22383175 22383473 -205141105 + AluSx SINE Alu 1 300 -12 4235 203 82 39 chr3 22383632 22385039 -205139539 - L1ME2 LINE L1 0 6334 4569 1631 136 38 38 chr3 22385039 22385326 -205139252 + AluSx SINE Alu 11 297 -15 4235 203 82 39 chr3 22385326 22386022 -205138556 - L1ME2 LINE L1 -1765 4569 3905 21 0 0 0 chr3 22386044 22386065 -205138513 + AT_rich Low_complexity Low_complexity 1 21 0 679 225 0 0 chr3 22386080 22386200 -205138378 - FLAM_A SINE Alu -22 120 1 459 242 187 9 chr3 22386578 22386768 -205137810 + MIR SINE MIR 36 253 -9 2296 88 0 0 chr3 22386812 22387095 -205137483 - AluSx SINE Alu -29 283 1 1861 174 24 0 chr3 22390239 22390533 -205134045 + AluJo SINE Alu 1 301 -11 1474 159 13 8 chr3 22390903 22391142 -205133436 + AluJo SINE Alu 55 294 -18 2018 139 27 3 chr3 22391550 22391851 -205132727 - AluJb SINE Alu 0 312 5 432 270 88 0 chr3 22392636 22392773 -205131805 - MIR SINE MIR -51 211 63 1324 117 68 9 chr3 22393332 22393554 -205131024 - MER46A DNA MER2_type 0 236 2 245 301 19 39 chr3 22394036 22394139 -205130439 - MER5B DNA MER1_type -69 109 9 268 308 10 39 chr3 22394385 22394489 -205130089 - MER5B DNA MER1_type -69 109 9 243 156 429 0 chr3 22396039 22396116 -205128462 + MLT1G3 LTR MaLR 220 329 -201 241 243 57 0 chr3 22396186 22396256 -205128322 + MLT1G3 LTR MaLR 520 593 -2 349 303 178 59 chr3 22396257 22396735 -205127843 + HAL1 LINE L1 30 564 -1943 332 326 62 31 chr3 22397305 22397434 -205127144 + MIR SINE MIR 64 196 -66 1639 155 38 35 chr3 22397501 22397791 -205126787 - AluJb SINE Alu -21 291 1 261 262 204 0 chr3 22398480 22398583 -205125995 - L2 LINE L2 -3 3269 3146 280 320 19 10 chr3 22398753 22398856 -205125722 + MER5B DNA MER1_type 1 104 -74 217 330 85 9 chr3 22399303 22399409 -205125169 + MIR SINE MIR 10 123 -139 889 111 0 76 chr3 22399627 22399741 -205124837 + AluJo/FLAM SINE Alu 1 103 -199 2050 113 20 10 chr3 22399741 22400034 -205124544 - AluSq SINE Alu -17 296 1 889 111 0 76 chr3 22400034 22400063 -205124515 + AluJo/FLAM SINE Alu 103 133 -169 8411 97 60 11 chr3 22400134 22401352 -205123226 - HSMAR1 DNA Mariner 0 1287 11 21 0 0 0 chr3 22402497 22402518 -205122060 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 22402595 22402619 -205121959 + GC_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr3 22402667 22402692 -205121886 + GC_rich Low_complexity Low_complexity 1 25 0 228 218 8 73 chr3 22402741 22402865 -205121713 + C-rich Low_complexity Low_complexity 5 120 0 27 62 0 0 chr3 22402875 22402923 -205121655 + GC_rich Low_complexity Low_complexity 1 48 0 25 65 0 0 chr3 22402986 22403032 -205121546 + GC_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr3 22403088 22403109 -205121469 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr3 22403119 22403161 -205121417 + GC_rich Low_complexity Low_complexity 1 42 0 233 141 0 59 chr3 22403607 22403692 -205120886 + (CGGGGG)n Simple_repeat Simple_repeat 3 82 0 482 288 250 16 chr3 22404174 22404490 -205120088 - L2 LINE L2 -52 3261 2872 262 191 101 45 chr3 22404713 22404802 -205119776 - L2 LINE L2 -5 3267 3174 292 51 0 26 chr3 22404818 22404881 -205119697 - Alu SINE Alu 0 309 248 535 265 118 6 chr3 22404999 22405169 -205119409 + MIR SINE MIR 74 262 0 421 274 236 27 chr3 22405599 22405858 -205118720 + L2 LINE L2 2997 3309 -4 21 107 0 0 chr3 22406454 22406538 -205118040 + AT_rich Low_complexity Low_complexity 1 84 0 2312 76 16 0 chr3 22406803 22407106 -205117472 - AluY SINE Alu -2 309 2 181 277 0 21 chr3 22407220 22407267 -205117311 + MIR3 SINE MIR 109 154 -54 222 254 149 0 chr3 22407547 22407614 -205116964 - L3 LINE CR1 -4 1573 1497 2419 74 0 3 chr3 22408675 22408973 -205115605 + AluSg SINE Alu 1 297 -13 34 42 0 0 chr3 22409305 22409353 -205115225 + AT_rich Low_complexity Low_complexity 1 48 0 24 85 0 0 chr3 22409390 22409449 -205115129 + AT_rich Low_complexity Low_complexity 1 59 0 1296 230 103 59 chr3 22409469 22409896 -205114682 + L1ME3A LINE L1 5671 6122 -48 2000 132 3 3 chr3 22409896 22410192 -205114386 - AluSx SINE Alu -16 296 1 1296 230 103 59 chr3 22410192 22410238 -205114340 + L1ME3A LINE L1 6122 6165 -5 355 292 65 19 chr3 22410576 22410730 -205113848 + MIR SINE MIR 29 189 -73 2148 117 13 3 chr3 22411592 22411901 -205112677 - AluSp SINE Alu -1 312 1 181 290 151 0 chr3 22412058 22412151 -205112427 - MIR SINE MIR 0 262 156 317 128 0 0 chr3 22412646 22412693 -205111885 - FLAM SINE Alu -2 131 85 418 335 80 66 chr3 22412752 22413340 -205111238 + L2 LINE L2 2576 3251 -21 2289 84 0 0 chr3 22413757 22414042 -205110536 + AluSc SINE Alu 1 285 -24 806 280 52 70 chr3 22414790 22415372 -205109206 + L1M4 LINE L1 4698 5268 -878 180 0 0 0 chr3 22417717 22417737 -205106841 + (T)n Simple_repeat Simple_repeat 1 20 0 251 304 51 13 chr3 22417918 22417997 -205106581 - L2 LINE L2 -5 3267 3186 490 288 74 6 chr3 22418318 22418481 -205106097 - MIR SINE MIR -74 188 15 2178 59 7 7 chr3 22418523 22418796 -205105782 - AluY SINE Alu -3 308 36 23 0 0 0 chr3 22419043 22419066 -205105512 + AT_rich Low_complexity Low_complexity 1 23 0 4681 137 62 32 chr3 22419117 22419567 -205105011 - MER6 DNA MER2_type -4 861 375 2278 79 6 29 chr3 22419567 22419883 -205104695 - AluY SINE Alu -2 309 1 4681 137 62 32 chr3 22419883 22420238 -205104340 - MER6 DNA MER2_type -490 375 32 216 0 0 0 chr3 22420584 22420608 -205103970 + (A)n Simple_repeat Simple_repeat 1 24 0 2213 100 0 22 chr3 22420711 22421030 -205103548 - AluSq SINE Alu -1 312 1 1054 141 5 32 chr3 22421469 22421654 -205102924 + AluJo SINE Alu 108 287 -25 493 227 0 0 chr3 22421874 22421962 -205102616 + MIR SINE MIR 1 88 -174 1589 248 22 2 chr3 22421962 22422426 -205102152 - L1M4 LINE L1 -2533 3613 3141 651 183 25 0 chr3 22422427 22422547 -205102031 + L1M4 LINE L1 5428 5550 -634 8325 11 5 1 chr3 22422791 22424206 -205100372 + L1PA3 LINE L1 4734 6151 -4 2238 114 10 0 chr3 22424302 22424601 -205099977 - AluSg SINE Alu -8 302 1 296 265 117 85 chr3 22425093 22425316 -205099262 - HAL1 LINE L1 0 2507 2278 4173 132 54 36 chr3 22425376 22425897 -205098681 - L1MB3 LINE L1 -2 6181 5640 2061 148 53 31 chr3 22425897 22426175 -205098403 + MER47A DNA MER2_type 1 290 -2033 2300 109 3 0 chr3 22426175 22426478 -205098100 - AluSx SINE Alu -8 304 1 2061 148 53 31 chr3 22426478 22426557 -205098021 + MER47A DNA MER2_type 290 366 0 4173 132 54 36 chr3 22426557 22426818 -205097760 - L1MB3 LINE L1 -543 5640 5385 2504 77 0 3 chr3 22426860 22427170 -205097408 - AluSp SINE Alu -4 309 1 2078 146 3 0 chr3 22427225 22427534 -205097044 - AluSx SINE Alu -2 310 1 2323 202 24 34 chr3 22427534 22427687 -205096891 - L1MB3 LINE L1 -750 5396 5243 2758 140 34 0 chr3 22427687 22428101 -205096477 - MSTA LTR MaLR 0 428 1 2323 202 24 34 chr3 22428101 22428297 -205096281 - L1MB3 LINE L1 -903 5243 5047 1644 172 7 28 chr3 22428297 22428588 -205095990 - AluJo SINE Alu -21 291 7 2323 202 24 34 chr3 22428588 22428830 -205095748 - L1MB3 LINE L1 -1099 5047 4810 301 94 16 62 chr3 22428832 22428896 -205095682 - L1MB2 LINE L1 0 6171 6111 430 279 10 0 chr3 22428897 22429001 -205095577 - Tigger5 DNA MER2_type 0 2323 2219 271 200 40 0 chr3 22428996 22429046 -205095532 - Tigger5 DNA MER2_type -2270 53 2 * 1372 142 61 4 chr3 22429048 22429295 -205095283 - L1MB2 LINE L1 -59 6112 5852 5386 202 36 69 chr3 22429297 22429658 -205094920 - L1MB3 LINE L1 -1340 4806 4435 2204 128 7 0 chr3 22429658 22429964 -205094614 - AluSx SINE Alu -4 308 1 5386 202 36 69 chr3 22429964 22431001 -205093577 - L1MB3 LINE L1 -1711 4435 3463 928 158 0 0 chr3 22431001 22431134 -205093444 - FLAM_C SINE Alu 0 133 1 5386 202 36 69 chr3 22431134 22431303 -205093275 - L1MB3 LINE L1 -2683 3463 3290 234 209 70 35 chr3 22431338 22431424 -205093154 - HAL1 LINE L1 -289 2218 2130 1741 255 45 44 chr3 22431442 22432263 -205092315 - HAL1 LINE L1 -525 1982 1128 437 250 122 0 chr3 22432266 22432414 -205092164 + MIR SINE MIR 53 218 -44 506 244 98 33 chr3 22432466 22432740 -205091838 - HAL1 LINE L1 -1398 1109 818 1910 135 57 3 chr3 22432743 22433039 -205091539 + AluSx SINE Alu 1 312 0 269 145 158 53 chr3 22433056 22433132 -205091446 + AluJ/FRAM SINE Alu 219 302 0 1946 150 85 18 chr3 22433256 22433596 -205090982 - MER47A DNA MER2_type 0 366 4 545 290 71 62 chr3 22433971 22434323 -205090255 - HAL1 LINE L1 -2152 355 1 853 307 77 33 chr3 22434402 22434963 -205089615 - L2 LINE L2 0 3313 2714 1531 179 7 48 chr3 22435232 22435523 -205089055 - AluJo SINE Alu -33 279 1 216 235 99 37 chr3 22436158 22436239 -205088339 - MIR SINE MIR -1 261 176 805 188 0 8 chr3 22436249 22436382 -205088196 + AluJb SINE Alu 5 136 -176 2406 86 0 0 chr3 22436382 22436684 -205087894 + AluY SINE Alu 1 302 -9 1992 179 32 23 chr3 22436688 22437155 -205087423 - MLT2A2 LTR ERVL -66 488 8 1077 178 9 28 chr3 22437156 22437369 -205087209 - AluJo SINE Alu -41 271 63 1520 247 175 61 chr3 22437393 22438028 -205086550 - L1M4 LINE L1 -1495 4651 4090 2266 126 53 0 chr3 22438028 22438370 -205086208 - L1MA3 LINE L1 0 6305 5946 1520 247 175 61 chr3 22438370 22438523 -205086055 - L1M4 LINE L1 -2056 4090 3956 297 0 0 0 chr3 22438523 22438556 -205086022 + (CA)n Simple_repeat Simple_repeat 2 34 0 1520 247 175 61 chr3 22438556 22438937 -205085641 - L1M4 LINE L1 -2190 3956 3620 2457 87 3 0 chr3 22438937 22439248 -205085330 - AluSp SINE Alu -1 312 1 1520 247 175 61 chr3 22439248 22439538 -205085040 - L1M4 LINE L1 -2526 3620 2974 * 3313 193 48 8 chr3 22439531 22440475 -205084103 - L1ME1 LINE L1 -175 5991 5010 332 274 38 65 chr3 22440816 22441002 -205083576 - L1ME LINE L1 -349 5772 5592 726 235 60 20 chr3 22441128 22441379 -205083199 - MER20B DNA MER1_type -1 782 522 1871 176 0 0 chr3 22442136 22442443 -205082135 - AluJo SINE Alu -5 307 1 629 280 80 40 chr3 22442615 22442865 -205081713 + L2 LINE L2 3054 3313 0 232 257 105 86 chr3 22442897 22443107 -205081471 - L1ME LINE L1 -200 5921 5708 268 233 123 14 chr3 22443185 22443258 -205081320 - LTR67 LTR ERVL -104 453 373 205 368 53 0 chr3 22444203 22444279 -205080299 + MIR SINE MIR 33 112 -96 1546 164 24 45 chr3 22444573 22444710 -205079868 + AluJb SINE Alu 1 139 -173 2191 105 30 3 chr3 22444710 22445014 -205079564 + AluSq SINE Alu 1 312 -1 1546 164 24 45 chr3 22445014 22445163 -205079415 + AluJb SINE Alu 139 281 -31 1629 170 6 25 chr3 22446814 22447132 -205077446 - AluJo SINE Alu 0 312 1 212 234 0 0 chr3 22447556 22447603 -205076975 - L2 LINE L2 -5 3308 3262 245 276 0 58 chr3 22447641 22447728 -205076850 - L2 LINE L2 -160 3112 3031 2280 96 0 0 chr3 22448232 22448533 -205076045 + AluSq SINE Alu 1 301 -12 334 285 75 65 chr3 22449258 22449472 -205075106 - L1ME3A LINE L1 -5 6165 5950 2129 123 0 0 chr3 22449499 22449800 -205074778 - AluSc SINE Alu -8 301 1 23 0 0 0 chr3 22449804 22449827 -205074751 + AT_rich Low_complexity Low_complexity 1 23 0 7743 93 64 12 chr3 22449944 22451071 -205073507 - HSMAR1 DNA Mariner -92 1195 11 21 0 0 0 chr3 22452216 22452237 -205072341 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 22452314 22452338 -205072240 + GC_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr3 22452386 22452411 -205072167 + GC_rich Low_complexity Low_complexity 1 25 0 228 218 8 73 chr3 22452460 22452584 -205071994 + C-rich Low_complexity Low_complexity 5 120 0 27 62 0 0 chr3 22452594 22452642 -205071936 + GC_rich Low_complexity Low_complexity 1 48 0 25 65 0 0 chr3 22452705 22452751 -205071827 + GC_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr3 22452807 22452828 -205071750 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr3 22452838 22452880 -205071698 + GC_rich Low_complexity Low_complexity 1 42 0 233 141 0 59 chr3 22453326 22453411 -205071167 + (CGGGGG)n Simple_repeat Simple_repeat 3 82 0 506 282 250 16 chr3 22453893 22454209 -205070369 - L2 LINE L2 -52 3261 2872 270 191 101 45 chr3 22454432 22454521 -205070057 - L2 LINE L2 -5 3267 3174 299 51 0 26 chr3 22454537 22454600 -205069978 - Alu SINE Alu 0 309 248 519 260 127 7 chr3 22454718 22454868 -205069710 + MIR SINE MIR 74 241 -21 447 270 236 27 chr3 22455318 22455577 -205069001 + L2 LINE L2 2997 3309 -4 21 107 0 0 chr3 22456173 22456257 -205068321 + AT_rich Low_complexity Low_complexity 1 84 0 2215 76 16 0 chr3 22456522 22456825 -205067753 - AluY SINE Alu -2 309 2 186 277 0 21 chr3 22456939 22456986 -205067592 + MIR3 SINE MIR 109 154 -54 231 254 149 0 chr3 22457266 22457333 -205067245 - L3 LINE CR1 -4 1573 1497 2310 76 0 3 chr3 22458394 22458695 -205065883 + AluSg SINE Alu 1 300 -10 34 42 0 0 chr3 22459024 22459072 -205065506 + AT_rich Low_complexity Low_complexity 1 48 0 24 85 0 0 chr3 22459109 22459168 -205065410 + AT_rich Low_complexity Low_complexity 1 59 0 1216 232 115 40 chr3 22459188 22459614 -205064964 + L1ME3A LINE L1 5671 6128 -42 1914 128 3 7 chr3 22459615 22459912 -205064666 - AluSx SINE Alu -16 296 1 857 94 39 0 chr3 22459917 22460044 -205064534 - AluSq/x SINE Alu -181 132 1 368 252 65 24 chr3 22460060 22460183 -205064395 + MIR SINE MIR 75 202 -60 1768 142 11 3 chr3 22460364 22460646 -205063932 - AluJo SINE Alu -28 284 1 225 0 0 0 chr3 22461992 22462017 -205062561 + (A)n Simple_repeat Simple_repeat 1 25 0 368 207 54 54 chr3 22462260 22462439 -205062139 - MIR3 SINE MIR -18 190 12 2024 123 7 3 chr3 22463627 22463920 -205060658 + AluSx SINE Alu 1 294 -18 1280 143 0 78 chr3 22464016 22464260 -205060318 + AluJo SINE Alu 33 257 -55 232 196 0 59 chr3 22464432 22464483 -205060095 + L3 LINE CR1 1290 1337 -240 1961 145 3 0 chr3 22464807 22465111 -205059467 - AluSx SINE Alu -7 305 1 803 144 0 0 chr3 22465495 22465613 -205058965 - AluSq/x SINE Alu -194 119 2 294 151 0 58 chr3 22465690 22465776 -205058802 + CT-rich Low_complexity Low_complexity 4 84 0 548 217 7 43 chr3 22465779 22465805 -205058773 - FLAM_C SINE Alu -169 133 108 484 29 43 0 chr3 22465805 22465874 -205058704 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 548 217 7 43 chr3 22465874 22465985 -205058593 - FLAM_C SINE Alu -194 108 1 394 273 47 8 chr3 22465990 22466118 -205058460 - MIR SINE MIR -74 188 56 884 114 0 15 chr3 22466416 22466547 -205058031 + FLAM_C SINE Alu 5 133 0 1598 170 69 58 chr3 22467166 22467497 -205057081 + L1MD2 LINE L1 5093 5419 -940 1908 130 27 3 chr3 22467497 22467790 -205056788 + AluSx SINE Alu 1 300 -12 1609 169 0 0 chr3 22467791 22468064 -205056514 + AluJo SINE Alu 33 305 -7 1598 170 69 58 chr3 22468064 22468291 -205056287 + L1MD2 LINE L1 5418 6169 -190 * 1685 143 6 57 chr3 22468278 22468358 -205056220 + L1MB8 LINE L1 5727 5809 -369 2015 115 0 10 chr3 22468358 22468492 -205056086 + AluSq SINE Alu 1 135 -178 2238 84 0 3 chr3 22468492 22468791 -205055787 + AluSg SINE Alu 1 298 -12 2015 115 0 10 chr3 22468791 22468952 -205055626 + AluSq SINE Alu 135 293 -20 1685 143 6 57 chr3 22468952 22469207 -205055371 + L1MB8 LINE L1 5809 6045 -133 919 137 0 14 chr3 22469886 22470032 -205054546 - AluJb SINE Alu -31 281 138 2205 112 26 0 chr3 22470035 22470339 -205054239 - AluSq SINE Alu -1 312 1 570 221 0 38 chr3 22470473 22470604 -205053974 + AluSg/x SINE Alu 85 210 -100 203 290 0 16 chr3 22470800 22470862 -205053716 + CT-rich Low_complexity Low_complexity 3 63 0 849 221 50 15 chr3 22471090 22471289 -205053289 - MIR SINE MIR -49 213 8 1033 170 13 52 chr3 22471428 22471657 -205052921 - AluJo SINE Alu -15 297 78 2093 113 3 3 chr3 22473186 22473486 -205051092 + AluSx SINE Alu 2 301 -11 2423 135 107 9 chr3 22474374 22474812 -205049766 + L1MB3 LINE L1 5703 6183 0 354 263 51 34 chr3 22476202 22476320 -205048258 + L2 LINE L2 3133 3252 -20 2121 103 7 7 chr3 22476761 22477062 -205047516 + AluY SINE Alu 1 301 -10 2720 181 60 22 chr3 22477062 22477324 -205047254 + L1MB7 LINE L1 4494 4744 -1402 3578 140 29 27 chr3 22477324 22477989 -205046589 + L1MA7 LINE L1 5621 6286 -5 2720 181 60 22 chr3 22477989 22478371 -205046207 + L1MB7 LINE L1 4744 5163 -983 819 214 0 42 chr3 22478371 22478539 -205046039 - AluJb SINE Alu -21 291 131 2265 87 3 0 chr3 22478542 22478842 -205045736 - AluSp SINE Alu -12 301 1 1429 164 38 24 chr3 22478852 22479144 -205045434 - AluJb SINE Alu -13 299 4 4700 157 80 6 chr3 22479149 22480092 -205044486 + L1MB7 LINE L1 5153 6165 -19 1864 150 49 15 chr3 22480493 22480820 -205043758 - MER7A DNA MER2_type 0 346 11 2172 76 28 0 chr3 22481015 22481306 -205043272 + AluY SINE Alu 1 299 -12 3220 165 66 10 chr3 22481567 22482183 -205042395 + L1MB8 LINE L1 5010 5692 -486 216 0 0 0 chr3 22482183 22482207 -205042371 + (CA)n Simple_repeat Simple_repeat 2 25 0 3220 165 66 10 chr3 22482207 22482457 -205042121 + L1MB8 LINE L1 5692 5926 -252 997 91 0 0 chr3 22482580 22482712 -205041866 - AluSp SINE Alu -181 132 1 3891 206 96 50 chr3 22482718 22483248 -205041330 - L1MCb LINE L1 -4820 1744 1240 1700 144 28 14 chr3 22483248 22483407 -205041171 - AluSx SINE Alu -12 300 134 2234 103 0 0 chr3 22483407 22483707 -205040871 - AluSg SINE Alu -10 300 1 1700 144 28 14 chr3 22483707 22483838 -205040740 - AluSx SINE Alu -178 134 6 3891 206 96 50 chr3 22483838 22484432 -205040146 - L1MCb LINE L1 -5324 1240 675 1884 146 10 16 chr3 22484432 22484740 -205039838 - AluJb SINE Alu 0 312 7 3891 206 96 50 chr3 22484740 22485252 -205039326 - L1MCb LINE L1 -5889 675 2 240 299 299 11 chr3 22485423 22485597 -205038981 + MIR SINE MIR 23 246 -16 289 284 97 45 chr3 22485814 22485948 -205038630 + MIR SINE MIR 37 177 -85 222 226 38 0 chr3 22486011 22486064 -205038514 + MIR SINE MIR 97 151 -111 2271 83 0 3 chr3 22487089 22487390 -205037188 - AluSq SINE Alu -13 300 1 1945 142 3 0 chr3 22488380 22488676 -205035902 + AluSx SINE Alu 1 297 -15 2247 76 0 3 chr3 22488991 22489282 -205035296 - AluY SINE Alu -21 290 1 977 245 42 28 chr3 22492210 22492496 -205032082 + L2 LINE L2 3019 3308 -5 866 144 0 43 chr3 22492588 22492727 -205031851 + FLAM_C SINE Alu 1 133 0 309 256 228 6 chr3 22492915 22493095 -205031483 + L1ME LINE L1 5636 5855 -266 808 224 26 0 chr3 22493665 22493821 -205030757 + MER45A DNA AcHobo 1 160 -18 266 279 101 23 chr3 22493993 22494122 -205030456 + MIR SINE MIR 109 247 -15 1600 102 4 4 chr3 22494820 22495046 -205029532 + AluSg/x SINE Alu 73 298 -14 498 33 0 0 chr3 22495046 22495106 -205029472 + (TA)n Simple_repeat Simple_repeat 2 61 0 1034 190 8 101 chr3 22495369 22495543 -205029035 - MER58A DNA MER1_type -2196 224 35 3212 161 43 37 chr3 22495543 22496220 -205028358 + L1MB7 LINE L1 5485 6165 -19 1034 190 8 101 chr3 22496220 22496241 -205028337 - MER58A DNA MER1_type -2385 35 53 2350 77 0 7 chr3 22496241 22496541 -205028037 + AluSc SINE Alu 1 298 -11 1034 190 8 101 chr3 22496541 22496591 -205027987 - MER58A DNA MER1_type -2366 54 1 1933 121 0 4 chr3 22497296 22497560 -205027018 - AluSx SINE Alu -16 296 34 188 320 78 19 chr3 22499372 22499475 -205025103 + L2 LINE L2 3155 3263 -9 201 322 35 9 chr3 22499843 22499958 -205024620 + L2 LINE L2 2917 3034 -238 266 348 6 85 chr3 22500216 22500297 -205024281 + L2 LINE L2 3121 3184 -88 691 211 99 89 chr3 22500297 22500389 -205024189 + MER58C DNA MER1_type 1 91 -2329 2207 121 3 3 chr3 22500389 22500696 -205023882 - AluSx SINE Alu -5 307 1 691 211 99 89 chr3 22500696 22500816 -205023762 + MER58C DNA MER1_type 91 215 0 266 348 6 85 chr3 22500816 22500898 -205023680 + L2 LINE L2 3184 3271 -1 1111 170 13 52 chr3 22502326 22502555 -205022023 + AluJo SINE Alu 78 297 -15 766 221 50 15 chr3 22502694 22502893 -205021685 + MIR SINE MIR 8 213 -49 1404 128 46 39 chr3 22503313 22503513 -205021065 - L1MA8 LINE L1 -2 6289 6085 1893 148 24 0 chr3 22503513 22503810 -205020768 + AluSx SINE Alu 1 304 -8 1404 128 46 39 chr3 22503810 22503891 -205020687 - L1MA8 LINE L1 -206 6085 6006 243 189 40 14 chr3 22504082 22504156 -205020422 + (CAA)n Simple_repeat Simple_repeat 3 78 0 1981 194 109 2 chr3 22505234 22505647 -205018931 + MSTB2 LTR MaLR 1 457 0 196 327 58 0 chr3 22508370 22508474 -205016104 - MER5A DNA MER1_type -79 110 1 408 208 167 17 chr3 22508501 22508621 -205015957 - MER5B DNA MER1_type -40 138 1 589 153 0 0 chr3 22508651 22508757 -205015821 + MER5A DNA MER1_type 4 109 -80 233 240 231 10 chr3 22508682 22508786 -205015792 - MER5A DNA MER1_type -23 166 40 * 280 328 0 17 chr3 22508831 22508947 -205015631 + MER5B DNA MER1_type 63 176 -2 282 324 28 49 chr3 22508953 22509095 -205015483 + MIR SINE MIR 13 151 -111 5050 118 7 17 chr3 22509228 22510435 -205014143 + L1P4 LINE L1 4589 5792 -371 817 152 7 46 chr3 22510435 22510586 -205013992 - THE1C LTR MaLR 0 375 231 199 248 0 0 chr3 22511212 22511266 -205013312 - MIR SINE MIR -65 143 97 681 153 140 20 chr3 22511866 22512016 -205012562 - MLT1D LTR MaLR 0 505 338 679 137 26 0 chr3 22512116 22512233 -205012345 + L1 LINE L1 4689 4808 -1338 220 210 25 0 chr3 22512240 22512321 -205012257 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 858 198 54 0 chr3 22513469 22513636 -205010942 - MER97b DNA MER1_type? -875 178 3 333 0 0 0 chr3 22513766 22513803 -205010775 + (CA)n Simple_repeat Simple_repeat 2 38 0 372 158 0 0 chr3 22513803 22513879 -205010699 + GA-rich Low_complexity Low_complexity 1 76 0 197 234 187 28 chr3 22515239 22515346 -205009232 + L2 LINE L2 3189 3312 -1 417 221 100 57 chr3 22515870 22516010 -205008568 + MLT1H LTR MaLR 404 549 0 188 375 107 0 chr3 22516017 22516129 -205008449 + L2 LINE L2 2915 3038 -234 310 197 56 0 chr3 22516695 22516766 -205007812 + MER94 DNA DNA 48 122 -12 237 297 0 55 chr3 22517296 22517387 -205007191 + MIR3 SINE MIR 122 207 -1 1382 186 52 42 chr3 22517841 22518147 -205006431 + AluJo SINE Alu 1 309 -3 320 289 69 64 chr3 22518204 22518422 -205006156 + MIR SINE MIR 10 228 -34 302 237 10 0 chr3 22518998 22519095 -205005483 + (CTATA)n Simple_repeat Simple_repeat 1 98 0 612 91 0 0 chr3 22519097 22519185 -205005393 + (CCTAT)n Simple_repeat Simple_repeat 2 89 0 411 223 273 0 chr3 22519188 22519327 -205005251 + MER5A DNA MER1_type 9 185 -4 6955 57 10 43 chr3 22520374 22521360 -205003218 - SVA Other Other 0 1386 433 6117 60 19 47 chr3 22521373 22522533 -205002045 - SVA Other Other -518 868 4 223 0 0 96 chr3 22522533 22522585 -205001993 + (GGGAGA)n Simple_repeat Simple_repeat 4 50 0 820 157 0 0 chr3 22523119 22523234 -205001344 + FLAM_C SINE Alu 1 115 -28 956 292 128 8 chr3 22523989 22524356 -205000222 + LTR16C LTR ERVL 81 491 0 26 0 0 0 chr3 22524514 22524540 -205000038 + AT_rich Low_complexity Low_complexity 1 26 0 2692 80 0 3 chr3 22524579 22524928 -204999650 + L1PA8A LINE L1 5480 5827 -304 2609 76 0 12 chr3 22525028 22525372 -204999206 + L1PA8A LINE L1 5780 6119 -12 300 245 108 10 chr3 22525471 22525573 -204999005 + MIR SINE MIR 95 206 -56 329 152 174 43 chr3 22525833 22525925 -204998653 - MER53 DNA DNA -82 107 4 260 288 0 0 chr3 22526341 22526407 -204998171 + MIR SINE MIR 196 261 -1 253 320 0 13 chr3 22526994 22527072 -204997506 - MIR SINE MIR -178 84 8 1607 188 4 11 chr3 22527907 22528184 -204996394 + AluJo SINE Alu 1 275 -37 33 90 0 0 chr3 22529159 22529248 -204995330 + AT_rich Low_complexity Low_complexity 1 89 0 572 270 104 12 chr3 22531042 22531205 -204993373 + MER20B DNA MER1_type 1 178 -605 330 276 64 72 chr3 22531366 22531752 -204992826 + MLT1H LTR MaLR 57 533 -16 441 317 43 11 chr3 22532866 22533052 -204991526 - MIR SINE MIR -51 211 20 209 317 28 42 chr3 22534318 22534460 -204990118 + MIR SINE MIR 58 197 -65 468 285 15 69 chr3 22534581 22534841 -204989737 + LTR16A1 LTR ERVL 208 453 -4 207 219 140 84 chr3 22534872 22535056 -204989522 + MIR SINE MIR 42 235 -27 443 309 79 0 chr3 22535440 22535605 -204988973 - MIR SINE MIR 0 262 85 23 0 0 0 chr3 22535941 22535964 -204988614 + AT_rich Low_complexity Low_complexity 1 23 0 964 259 110 47 chr3 22536958 22537387 -204987191 + LTR16A1 LTR ERVL 2 457 0 258 184 92 103 chr3 22537741 22537828 -204986750 + L2 LINE L2 3141 3226 -46 685 224 28 0 chr3 22537971 22538114 -204986464 + MER3 DNA MER1_type 62 208 -1 268 260 0 0 chr3 22538075 22538125 -204986453 - MER3 DNA MER1_type -122 87 38 * 334 353 98 0 chr3 22538128 22538250 -204986328 - MIR3 SINE MIR -52 156 23 845 251 49 12 chr3 22540198 22540445 -204984133 + MIR SINE MIR 2 257 -5 230 103 103 0 chr3 22540503 22540542 -204984036 - L1P4 LINE L1 -426 5735 5693 21 36 0 0 chr3 22540790 22540818 -204983760 + AT_rich Low_complexity Low_complexity 1 28 0 240 258 30 0 chr3 22541120 22541186 -204983392 - L1MC4a LINE L1 -587 7221 7154 2178 216 52 5 chr3 22541945 22542524 -204982054 + L1MC4 LINE L1 7161 7766 -276 1341 108 36 21 chr3 22542524 22542718 -204981860 + AluJb SINE Alu 98 294 -18 607 230 29 11 chr3 22542722 22542896 -204981682 + L1MC4 LINE L1 7757 7933 -109 296 341 71 45 chr3 22542916 22543224 -204981354 - L2 LINE L2 -20 3252 2937 629 226 158 12 chr3 22543585 22543749 -204980829 - MER5A DNA MER1_type 0 189 2 1579 182 4 11 chr3 22543754 22544029 -204980549 + AluJo SINE Alu 1 273 -39 443 128 0 13 chr3 22544058 22544136 -204980442 + (GAAAA)n Simple_repeat Simple_repeat 3 79 0 22 0 0 0 chr3 22544603 22544625 -204979953 + AT_rich Low_complexity Low_complexity 1 22 0 604 224 6 6 chr3 22544974 22545153 -204979425 + L1 LINE L1 3246 3424 -2722 27544 29 14 2 chr3 22545154 22551191 -204973387 + L1PA3 LINE L1 1 6155 0 15928 93 10 8 chr3 22551323 22554267 -204970311 + L1PA7 LINE L1 3221 6154 0 380 164 0 0 chr3 22554304 22554365 -204970213 + L1PA16 LINE L1 6098 6158 -8 928 261 9 4 chr3 22554941 22555171 -204969407 - MLT1G1 LTR MaLR -364 231 1 414 270 98 58 chr3 22555171 22555345 -204969233 - MLT1G1-int LTR MaLR 0 1371 1191 250 211 53 0 chr3 22555594 22555651 -204968927 + MER46C DNA MER2_type 279 338 0 631 257 34 22 chr3 22555912 22556091 -204968487 - MIR SINE MIR -14 248 68 1846 193 38 34 chr3 22556095 22556173 -204968405 - Looper DNA T2_type -941 617 541 20802 94 21 1 chr3 22556173 22558825 -204965753 - Charlie3 DNA MER1_type -4 2706 1 1846 193 38 34 chr3 22558825 22558841 -204965737 - Looper DNA T2_type -1017 541 527 912 200 11 21 chr3 22558841 22559031 -204965547 + L1MD2 LINE L1 6172 6359 0 1846 193 38 34 chr3 22559031 22559413 -204965165 - Looper DNA T2_type -1031 527 138 205 188 24 0 chr3 22559413 22559498 -204965080 + (TA)n Simple_repeat Simple_repeat 1 87 0 735 164 26 13 chr3 22559498 22559650 -204964928 - Looper DNA T2_type -1402 156 3 348 235 155 46 chr3 22559661 22559869 -204964709 + L2 LINE L2 2772 2997 -275 192 310 99 14 chr3 22559964 22560035 -204964543 + L2 LINE L2 3134 3210 -62 2121 99 14 7 chr3 22560190 22560484 -204964094 + AluSq SINE Alu 1 296 -17 348 217 165 26 chr3 22560510 22560625 -204963953 + Charlie8 DNA MER1_type 91 221 -2196 2112 98 0 4 chr3 22560760 22561036 -204963542 - AluSq SINE Alu -15 298 24 1729 99 0 5 chr3 22561036 22561257 -204963321 - AluSq SINE Alu -92 221 1 672 232 68 11 chr3 22561721 22561898 -204962680 + MER5A DNA MER1_type 1 187 -2 245 348 33 52 chr3 22561997 22562207 -204962371 + L2 LINE L2 2958 3163 -109 30 45 0 0 chr3 22562353 22562397 -204962181 + AT_rich Low_complexity Low_complexity 1 44 0 1215 194 26 8 chr3 22562844 22563112 -204961466 + L1M4 LINE L1 4290 4562 -1584 205 305 85 24 chr3 22563155 22563237 -204961341 + L2 LINE L2 3185 3271 -1 295 282 29 58 chr3 22563513 22563616 -204960962 - L2 LINE L2 -1 3271 3172 704 220 196 4 chr3 22563803 22564048 -204960530 - L1ME2 LINE L1 -6 6158 5867 24 67 0 0 chr3 22564590 22564635 -204959943 + GC_rich Low_complexity Low_complexity 1 45 0 6595 146 83 8 chr3 22565519 22566663 -204957915 - Tigger3b DNA MER2_type 0 1231 2 446 290 9 63 chr3 22566739 22566778 -204957800 - L1ME2 LINE L1 -306 5815 5775 1640 157 7 49 chr3 22566778 22567084 -204957494 - AluJo SINE Alu -19 293 1 446 290 9 63 chr3 22567084 22567265 -204957313 - L1ME2 LINE L1 -346 5775 5607 2360 94 3 0 chr3 22567499 22567798 -204956780 - AluSp SINE Alu -13 300 1 680 154 48 148 chr3 22567804 22568098 -204956480 - L1MA4 LINE L1 0 6300 6041 1541 167 12 4 chr3 22568491 22568749 -204955829 - AluJo SINE Alu -14 298 39 1014 73 6 8 chr3 22569085 22569262 -204955316 - AluJb SINE Alu -13 299 86 540 79 0 40 chr3 22569954 22570030 -204954548 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 2045 144 17 0 chr3 22570101 22570400 -204954178 + AluSx SINE Alu 1 304 -8 22 35 0 0 chr3 22570454 22570483 -204954095 + AT_rich Low_complexity Low_complexity 1 29 0 304 297 162 9 chr3 22570887 22570998 -204953580 - MIR3 SINE MIR -32 176 49 2421 77 0 3 chr3 22572368 22572668 -204951910 - AluY SINE Alu -12 299 1 1762 171 24 0 chr3 22572930 22573223 -204951355 + AluJb SINE Alu 1 300 -12 183 266 101 101 chr3 22573232 22573318 -204951260 + MIR SINE MIR 14 102 -160 1048 157 103 29 chr3 22573318 22573522 -204951056 + MER20 DNA MER1_type 1 219 0 183 266 101 101 chr3 22573522 22573593 -204950985 + MIR SINE MIR 101 171 -91 759 180 0 58 chr3 22573633 22573772 -204950806 + FLAM_A SINE Alu 2 132 -1 4860 162 32 18 chr3 22573807 22574299 -204950279 - L1MB7 LINE L1 0 6184 5671 2121 125 0 7 chr3 22574299 22574588 -204949990 + AluSx SINE Alu 8 294 -18 4860 162 32 18 chr3 22574588 22575035 -204949543 - L1MB7 LINE L1 -513 5671 5232 1919 143 0 33 chr3 22575444 22575751 -204948827 + AluJb SINE Alu 1 297 -15 22 0 0 0 chr3 22576171 22576193 -204948385 + AT_rich Low_complexity Low_complexity 1 22 0 885 221 77 71 chr3 22577397 22577736 -204946842 + L2 LINE L2 2973 3313 0 220 384 12 43 chr3 22577906 22578070 -204946508 + L2 LINE L2 563 721 -2593 244 241 0 17 chr3 22578103 22578161 -204946417 - Charlie4 DNA MER1_type -23 1938 1882 416 332 72 69 chr3 22578268 22578407 -204946171 + L2 LINE L2 2765 2902 -370 2335 96 6 10 chr3 22578407 22578719 -204945859 + AluSq SINE Alu 1 311 -2 416 332 72 69 chr3 22578719 22579070 -204945508 + L2 LINE L2 2902 3256 -16 2026 118 0 44 chr3 22579648 22579981 -204944597 - AluSx SINE Alu 0 320 1 2080 130 0 7 chr3 22580186 22580487 -204944091 + AluJb SINE Alu 11 309 -3 341 301 59 50 chr3 22580814 22581033 -204943545 - MIR SINE MIR -30 232 12 1165 119 64 50 chr3 22581258 22581476 -204943102 - AluJo SINE Alu -5 307 87 2190 119 0 19 chr3 22581642 22581961 -204942617 - AluSq SINE Alu 0 313 1 1531 146 113 22 chr3 22582665 22582939 -204941639 - AluJo SINE Alu -13 299 1 1758 160 29 39 chr3 22582947 22583254 -204941324 - AluJb SINE Alu -8 304 1 468 218 39 59 chr3 22583634 22583820 -204940758 + MIR SINE MIR 17 203 -59 201 39 0 0 chr3 22584263 22584289 -204940289 + (TG)n Simple_repeat Simple_repeat 2 27 0 1727 124 3 39 chr3 22584290 22584573 -204940005 - AluJb SINE Alu -39 273 1 381 246 188 22 chr3 22584963 22585101 -204939477 + MIR SINE MIR 81 241 -21 1435 179 47 11 chr3 22586127 22586406 -204938172 - AluJo SINE Alu -19 293 5 2260 92 0 0 chr3 22586482 22586801 -204937777 + AluSq SINE Alu 1 319 0 384 236 24 49 chr3 22587449 22587572 -204937006 + L2 LINE L2 3193 3312 -1 243 61 0 0 chr3 22587699 22587732 -204936846 + (A)n Simple_repeat Simple_repeat 1 33 0 215 153 119 51 chr3 22589139 22589198 -204935380 + MIR SINE MIR 135 197 -65 441 273 55 8 chr3 22589385 22589513 -204935065 + MIR SINE MIR 20 153 -55 2230 123 0 3 chr3 22589870 22590180 -204934398 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr3 22590350 22590371 -204934207 + AT_rich Low_complexity Low_complexity 1 21 0 554 138 92 31 chr3 22590431 22590497 -204934081 - L1MB8 LINE L1 -6 6172 6111 2407 58 41 0 chr3 22590497 22590791 -204933787 - AluY SINE Alu -5 306 1 554 138 92 31 chr3 22590791 22590854 -204933724 - L1MB8 LINE L1 -67 6111 6035 225 346 13 10 chr3 22590971 22591128 -204933450 + MIR SINE MIR 26 243 -19 368 261 36 51 chr3 22591142 22591280 -204933298 + L2 LINE L2 3178 3313 0 319 186 5 59 chr3 22591740 22591835 -204932743 + L1ME2 LINE L1 6015 6108 -54 1830 138 50 10 chr3 22591835 22592132 -204932446 + AluJb SINE Alu 1 309 -3 341 301 59 50 chr3 22592458 22592677 -204931901 - MIR SINE MIR -30 232 12 1165 119 64 50 chr3 22592902 22593120 -204931458 - AluJo SINE Alu -5 307 87 2190 119 0 19 chr3 22593286 22593605 -204930973 - AluSq SINE Alu 0 313 1 1531 146 113 22 chr3 22594309 22594583 -204929995 - AluJo SINE Alu -13 299 1 1758 160 29 39 chr3 22594591 22594898 -204929680 - AluJb SINE Alu -8 304 1 468 218 39 59 chr3 22595278 22595464 -204929114 + MIR SINE MIR 17 203 -59 201 39 0 0 chr3 22595907 22595933 -204928645 + (TG)n Simple_repeat Simple_repeat 2 27 0 1727 124 3 39 chr3 22595934 22596217 -204928361 - AluJb SINE Alu -39 273 1 381 246 188 22 chr3 22596607 22596745 -204927833 + MIR SINE MIR 81 241 -21 1435 179 47 11 chr3 22597771 22598050 -204926528 - AluJo SINE Alu -19 293 5 2260 92 0 0 chr3 22598126 22598409 -204926169 + AluSq SINE Alu 1 319 0 271 56 0 0 chr3 22598409 22598445 -204926133 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 384 279 8 33 chr3 22599094 22599216 -204925362 + L2 LINE L2 3153 3271 -1 1541 167 12 4 chr3 22599618 22599876 -204924702 - AluJo SINE Alu -14 298 39 1014 73 6 8 chr3 22600212 22600389 -204924189 - AluJb SINE Alu -13 299 86 540 79 0 40 chr3 22601081 22601157 -204923421 + tRNA-Lys-AAA tRNA tRNA 1 73 -3 2045 144 17 0 chr3 22601228 22601527 -204923051 + AluSx SINE Alu 1 304 -8 22 35 0 0 chr3 22601581 22601610 -204922968 + AT_rich Low_complexity Low_complexity 1 29 0 304 297 162 9 chr3 22602014 22602125 -204922453 - MIR3 SINE MIR -32 176 49 2421 77 0 3 chr3 22603495 22603795 -204920783 - AluY SINE Alu -12 299 1 1762 171 24 0 chr3 22604057 22604350 -204920228 + AluJb SINE Alu 1 300 -12 183 266 101 101 chr3 22604359 22604445 -204920133 + MIR SINE MIR 14 102 -160 1048 157 103 29 chr3 22604445 22604649 -204919929 + MER20 DNA MER1_type 1 219 0 183 266 101 101 chr3 22604649 22604720 -204919858 + MIR SINE MIR 101 171 -91 759 180 0 58 chr3 22604760 22604899 -204919679 + FLAM_A SINE Alu 2 132 -1 4860 162 32 18 chr3 22604934 22605426 -204919152 - L1MB7 LINE L1 0 6184 5671 2121 125 0 7 chr3 22605426 22605715 -204918863 + AluSx SINE Alu 8 294 -18 4860 162 32 18 chr3 22605715 22606162 -204918416 - L1MB7 LINE L1 -513 5671 5232 1919 143 0 33 chr3 22606571 22606878 -204917700 + AluJb SINE Alu 1 297 -15 22 0 0 0 chr3 22607298 22607320 -204917258 + AT_rich Low_complexity Low_complexity 1 22 0 885 221 77 71 chr3 22608524 22608863 -204915715 + L2 LINE L2 2973 3313 0 220 384 12 43 chr3 22609033 22609197 -204915381 + L2 LINE L2 563 721 -2593 244 241 0 17 chr3 22609230 22609288 -204915290 - Charlie4 DNA MER1_type -23 1938 1882 416 332 72 69 chr3 22609395 22609534 -204915044 + L2 LINE L2 2765 2902 -370 2335 96 6 10 chr3 22609534 22609846 -204914732 + AluSq SINE Alu 1 311 -2 416 332 72 69 chr3 22609846 22610197 -204914381 + L2 LINE L2 2902 3256 -16 2026 118 0 44 chr3 22610775 22611108 -204913470 - AluSx SINE Alu 0 320 1 1652 146 60 0 chr3 22611313 22611580 -204912998 + AluSx SINE Alu 11 293 -19 311 200 0 13 chr3 22611580 22611655 -204912923 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 468 205 115 0 chr3 22611657 22611779 -204912799 + MER58C DNA MER1_type 78 213 -2 376 130 0 0 chr3 22611844 22611898 -204912680 + MER66B LTR ERV1 295 348 -138 311 282 36 55 chr3 22613353 22613463 -204911115 + L2 LINE L2 3206 3313 0 536 249 157 19 chr3 22613557 22613818 -204910760 + L1ME4a LINE L1 5531 5827 -294 1923 179 0 3 chr3 22613881 22614188 -204910390 - AluJb SINE Alu -6 306 1 450 214 83 36 chr3 22614203 22614371 -204910207 + L1ME4a LINE L1 5946 6121 0 671 208 193 24 chr3 22614566 22614778 -204909800 + MIR SINE MIR 5 252 -10 336 257 59 33 chr3 22614823 22614975 -204909603 + L1ME4a LINE L1 5573 5728 -393 351 216 29 20 chr3 22615094 22615196 -204909382 + L1ME4a LINE L1 5786 5888 -233 572 249 11 58 chr3 22615220 22615409 -204909169 + L2 LINE L2 3125 3304 -9 27 54 0 40 chr3 22615639 22615688 -204908890 + AT_rich Low_complexity Low_complexity 1 48 -23 2277 100 7 0 chr3 22615688 22615989 -204908589 - AluSx SINE Alu -9 303 1 27 54 0 40 chr3 22615989 22616013 -204908565 + AT_rich Low_complexity Low_complexity 48 71 0 581 177 0 146 chr3 22616585 22616743 -204907835 + FLAM_C SINE Alu 2 136 -7 603 273 132 9 chr3 22616821 22617041 -204907537 + MIR SINE MIR 3 249 -13 27 49 0 0 chr3 22617188 22617229 -204907349 + AT_rich Low_complexity Low_complexity 1 41 0 31 0 0 0 chr3 22617417 22617448 -204907130 + AT_rich Low_complexity Low_complexity 1 31 0 3207 83 38 11 chr3 22618037 22618485 -204906093 + L1PA14 LINE L1 5700 6159 -2 757 186 111 42 chr3 22618937 22619175 -204905403 + MER33 DNA MER1_type 1 242 -82 1262 63 0 13 chr3 22619177 22619336 -204905242 - AluSp/q SINE Alu -1 312 156 481 173 25 0 chr3 22620672 22620753 -204903825 + MER5A DNA MER1_type 30 112 -77 933 194 31 47 chr3 22620805 22620996 -204903582 - MER5A DNA MER1_type 0 189 2 2338 85 0 0 chr3 22621152 22621445 -204903133 - AluSg SINE Alu -17 293 1 1358 173 35 0 chr3 22621645 22621871 -204902707 - MER46A DNA MER2_type -1 235 2 231 290 93 19 chr3 22622709 22622816 -204901762 + MIR SINE MIR 37 151 -111 2156 91 3 7 chr3 22623651 22623961 -204900617 + AluSp SINE Alu 1 309 0 1170 129 4 133 chr3 22623964 22624041 -204900537 - AluJo SINE Alu -102 210 125 2038 119 3 10 chr3 22624041 22624343 -204900235 - AluSx SINE Alu -12 300 1 1170 129 4 133 chr3 22624343 22624506 -204900072 - AluJo SINE Alu -187 125 1 350 152 36 31 chr3 22624562 22624645 -204899933 + LTR24B LTR ERV1 332 544 -32 569 242 68 0 chr3 22624691 22624823 -204899755 + FLAM_A SINE Alu 1 141 -1 419 198 0 33 chr3 22624851 22624942 -204899636 - L1M3 LINE L1 -395 5776 5689 1166 224 111 43 chr3 22624942 22625340 -204899238 + L2 LINE L2 2884 3308 -5 292 244 91 102 chr3 22625645 22625842 -204898736 + MER91A DNA MER1_type 2 196 0 968 213 48 13 chr3 22626161 22626391 -204898187 - MIR SINE MIR -5 257 20 279 213 27 13 chr3 22626397 22626472 -204898106 + CT-rich Low_complexity Low_complexity 4 79 0 234 164 0 0 chr3 22626847 22626902 -204897676 + GA-rich Low_complexity Low_complexity 2 56 0 304 298 129 29 chr3 22627038 22627209 -204897369 + L2 LINE L2 2896 3083 -189 873 168 84 51 chr3 22627385 22627599 -204896979 + MIR SINE MIR 42 262 0 920 71 8 24 chr3 22627710 22627836 -204896742 + AluY SINE Alu 1 124 -187 1296 137 24 9 chr3 22628018 22628230 -204896348 - AluJo SINE Alu -11 301 87 2146 108 28 0 chr3 22628365 22628652 -204895926 + AluSx SINE Alu 1 295 -17 282 29 0 0 chr3 22628731 22628766 -204895812 + (TG)n Simple_repeat Simple_repeat 2 36 0 746 207 0 21 chr3 22628766 22628897 -204895681 - FLAM_C SINE Alu -181 131 2 740 210 0 8 chr3 22628988 22629112 -204895466 + FLAM_A SINE Alu 1 123 -10 2288 87 0 34 chr3 22631394 22631715 -204892863 + AluSg SINE Alu 1 310 0 180 331 0 98 chr3 22632762 22632895 -204891683 + L2 LINE L2 2915 3034 -238 375 184 55 80 chr3 22632996 22633097 -204891481 - L1ME4a LINE L1 -4 6117 6020 1805 184 0 10 chr3 22633097 22633402 -204891176 + AluJb SINE Alu 1 302 -10 375 184 55 80 chr3 22633402 22633463 -204891115 - L1ME4a LINE L1 -101 6020 5959 297 181 178 10 chr3 22633814 22633941 -204890637 - HAL1b LINE L1 -31 1317 1191 239 222 0 67 chr3 22638580 22638670 -204885908 + (TATATG)n Simple_repeat Simple_repeat 4 87 0 865 145 0 0 chr3 22641300 22641424 -204883154 - AluJb SINE Alu -31 281 158 1900 134 17 7 chr3 22642720 22643010 -204881568 - AluJb SINE Alu -19 293 1 1994 203 24 36 chr3 22645213 22645502 -204879076 + L1ME LINE L1 4502 4784 -1362 1550 116 175 4 chr3 22645502 22645753 -204878825 + AluSg1 SINE Alu 1 294 -15 1994 203 24 36 chr3 22645753 22645956 -204878622 + L1ME LINE L1 4784 4988 -1158 868 110 0 0 chr3 22645961 22646079 -204878499 + AluSg/x SINE Alu 173 290 -20 1297 178 108 53 chr3 22646083 22646408 -204878170 + L1ME LINE L1 4987 5359 -807 2470 122 34 53 chr3 22646408 22646844 -204877734 - MSTA LTR MaLR 0 428 1 1297 178 108 53 chr3 22646844 22647067 -204877511 + L1ME LINE L1 5359 5568 -598 494 143 143 43 chr3 22647064 22647204 -204877374 + L1ME2 LINE L1 4133 4286 -1860 * 269 128 64 0 chr3 22647216 22647263 -204877315 + FAM SINE Alu 119 168 -11 949 227 103 46 chr3 22647269 22647459 -204877119 + L1ME2 LINE L1 5130 5308 -856 2592 34 0 7 chr3 22647459 22647754 -204876824 + AluY SINE Alu 1 293 -18 949 227 103 46 chr3 22647754 22647888 -204876690 + L1ME2 LINE L1 5308 5433 -731 1817 197 101 21 chr3 22647888 22648354 -204876224 + MLT1D LTR MaLR 3 505 0 949 227 103 46 chr3 22648354 22648589 -204875989 + L1ME2 LINE L1 5433 5725 -439 1031 237 68 61 chr3 22648907 22649333 -204875245 + L1ME2 LINE L1 5735 6163 -1 335 255 50 96 chr3 22649361 22649417 -204875161 + L2 LINE L2 3085 3142 -171 1674 152 32 0 chr3 22649417 22649700 -204874878 - AluJb SINE Alu -15 297 6 335 255 50 96 chr3 22649700 22649721 -204874857 + L2 LINE L2 3142 3162 -151 2395 64 0 0 chr3 22649721 22650018 -204874560 - AluY SINE Alu -14 297 1 335 255 50 96 chr3 22650018 22650178 -204874400 + L2 LINE L2 3162 3312 -1 221 244 89 44 chr3 22650460 22650550 -204874028 - L2 LINE L2 -175 3097 3004 316 248 68 8 chr3 22651280 22651397 -204873181 + L1ME2 LINE L1 6039 6162 -2 694 241 52 94 chr3 22651486 22651761 -204872817 + HAL1 LINE L1 2042 2327 -180 1883 149 10 19 chr3 22651761 22652070 -204872508 + AluJo SINE Alu 1 306 -6 694 241 52 94 chr3 22652070 22652132 -204872446 + HAL1 LINE L1 2327 2364 -143 2387 61 3 0 chr3 22652132 22652429 -204872149 + AluY SINE Alu 2 299 -12 694 241 52 94 chr3 22652429 22652472 -204872106 + HAL1 LINE L1 2364 2407 -100 5462 79 27 15 chr3 22652714 22653570 -204871008 + SVA Other Other 1 866 -520 6318 59 33 40 chr3 22653629 22654592 -204869986 + SVA Other Other 430 1386 0 251 237 272 43 chr3 22654596 22654753 -204869825 - MIR SINE MIR 0 262 73 331 182 121 0 chr3 22655196 22655295 -204869283 + MER102b DNA MER1_type 72 182 -159 260 266 25 0 chr3 22655307 22655386 -204869192 + MER102b DNA MER1_type 231 311 -30 233 290 0 0 chr3 22655713 22655775 -204868803 + L2 LINE L2 3235 3296 -17 282 149 53 96 chr3 22656005 22656099 -204868479 + MIR SINE MIR 60 149 -113 24 0 0 0 chr3 22656399 22656423 -204868155 + GC_rich Low_complexity Low_complexity 1 24 0 1931 108 24 0 chr3 22657319 22657606 -204866972 + AluSx SINE Alu 1 294 -18 323 206 92 11 chr3 22657624 22657711 -204866867 - L1MCa LINE L1 -4592 1834 1597 1729 114 4 8 chr3 22657719 22657974 -204866604 - AluSp SINE Alu -59 254 1 1214 145 23 9 chr3 22658108 22658329 -204866249 + AluJo SINE Alu 87 310 -2 1866 104 24 17 chr3 22658619 22658773 -204865805 - AluSx SINE Alu -23 289 131 2042 118 0 3 chr3 22658773 22659069 -204865509 - AluSx SINE Alu -17 295 1 1866 104 24 17 chr3 22659069 22659201 -204865377 - AluSx SINE Alu -181 131 1 368 252 65 24 chr3 22659217 22659340 -204865238 + MIR SINE MIR 75 202 -60 1768 142 11 3 chr3 22659521 22659803 -204864775 - AluJo SINE Alu -28 284 1 225 0 0 0 chr3 22661149 22661174 -204863404 + (A)n Simple_repeat Simple_repeat 1 25 0 368 207 54 54 chr3 22661417 22661596 -204862982 - MIR3 SINE MIR -18 190 12 2024 123 7 3 chr3 22662784 22663077 -204861501 + AluSx SINE Alu 1 294 -18 1280 143 0 78 chr3 22663173 22663417 -204861161 + AluJo SINE Alu 33 257 -55 232 196 0 59 chr3 22663589 22663640 -204860938 + L3 LINE CR1 1290 1337 -240 1961 145 3 0 chr3 22663964 22664268 -204860310 - AluSx SINE Alu -7 305 1 803 144 0 0 chr3 22664652 22664770 -204859808 - AluSq/x SINE Alu -194 119 2 294 151 0 58 chr3 22664847 22664933 -204859645 + CT-rich Low_complexity Low_complexity 4 84 0 548 217 7 43 chr3 22664936 22664962 -204859616 - FLAM_C SINE Alu -169 133 108 484 29 43 0 chr3 22664962 22665031 -204859547 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 548 217 7 43 chr3 22665031 22665142 -204859436 - FLAM_C SINE Alu -194 108 1 394 273 47 8 chr3 22665147 22665275 -204859303 - MIR SINE MIR -74 188 56 884 114 0 15 chr3 22665573 22665704 -204858874 + FLAM_C SINE Alu 5 133 0 1598 170 69 58 chr3 22666323 22666654 -204857924 + L1MD2 LINE L1 5093 5419 -940 1908 130 27 3 chr3 22666654 22666947 -204857631 + AluSx SINE Alu 1 300 -12 1536 179 0 0 chr3 22666948 22667221 -204857357 + AluJo SINE Alu 33 305 -7 1598 170 69 58 chr3 22667221 22667448 -204857130 + L1MD2 LINE L1 5418 6169 -190 2330 143 11 44 chr3 22667448 22667515 -204857063 + L1MB7 LINE L1 5727 5795 -389 2015 115 0 10 chr3 22667515 22667649 -204856929 + AluSq SINE Alu 1 135 -178 2261 87 0 0 chr3 22667649 22667947 -204856631 + AluSg SINE Alu 1 298 -12 2015 115 0 10 chr3 22667947 22668108 -204856470 + AluSq SINE Alu 135 293 -20 2330 143 11 44 chr3 22668108 22668481 -204856097 + L1MB7 LINE L1 5795 6165 -19 1867 153 0 13 chr3 22668491 22668805 -204855773 + AluJb SINE Alu 1 310 -2 470 245 6 74 chr3 22669032 22669195 -204855383 + L1MD2 LINE L1 6191 6342 -17 208 283 19 0 chr3 22669407 22669460 -204855118 - MIR SINE MIR -2 260 207 771 176 23 0 chr3 22671939 22672070 -204852508 - AluJo SINE Alu -178 134 1 1759 114 83 14 chr3 22672133 22672423 -204852155 + AluSg SINE Alu 1 310 0 202 306 87 44 chr3 22673466 22673649 -204850929 - MIR SINE MIR -70 192 2 4204 150 52 20 chr3 22674759 22675573 -204849005 - L1MA6 LINE L1 0 6300 5461 1068 140 22 11 chr3 22675573 22675751 -204848827 - AluSg/x SINE Alu -13 297 118 2212 102 7 3 chr3 22675774 22676079 -204848499 - AluSq SINE Alu -7 306 1 821 133 0 0 chr3 22676112 22676232 -204848346 - AluSp SINE Alu -193 120 1 1213 116 43 5 chr3 22676232 22676471 -204848107 - L1MA6 LINE L1 -743 5403 5229 2113 114 0 0 chr3 22676517 22676806 -204847772 + AluSg SINE Alu 1 289 -21 196 384 130 7 chr3 22677282 22677420 -204847158 - L2 LINE L2 -1 3271 3117 184 354 128 20 chr3 22677913 22678108 -204846470 + L2 LINE L2 2839 3054 -218 2093 113 3 3 chr3 22678713 22679013 -204845565 + AluSx SINE Alu 2 301 -11 2423 135 107 9 chr3 22679901 22680339 -204844239 + L1MB3 LINE L1 5703 6183 0 354 263 51 34 chr3 22681729 22681847 -204842731 + L2 LINE L2 3133 3252 -20 2072 120 3 0 chr3 22682288 22682587 -204841991 + AluSq SINE Alu 1 300 -13 739 304 104 25 chr3 22682707 22683072 -204841506 - L2 LINE L2 0 3313 2920 311 279 90 33 chr3 22683322 22683444 -204841134 + L3 LINE CR1 1445 1573 -4 1700 152 10 23 chr3 22683457 22683760 -204840818 - AluJb SINE Alu -13 299 1 1616 175 24 0 chr3 22684085 22684377 -204840201 - AluJb SINE Alu -13 299 1 1701 209 108 12 chr3 22684699 22685125 -204839453 + MLT1C LTR MaLR 1 467 0 2228 85 0 3 chr3 22685582 22685875 -204838703 - AluSp SINE Alu -21 292 1 1737 179 3 0 chr3 22686271 22686573 -204838005 - AluJb SINE Alu -9 303 1 513 239 56 46 chr3 22686613 22686810 -204837768 + Charlie8 DNA MER1_type 83 281 -2136 278 306 48 16 chr3 22686822 22686946 -204837632 + MIR SINE MIR 22 149 -113 598 277 84 97 chr3 22687144 22687387 -204837191 - L2 LINE L2 -1 3312 3067 2278 84 0 0 chr3 22687387 22687685 -204836893 + AluY SINE Alu 1 298 -13 598 277 84 97 chr3 22687685 22687744 -204836834 - L2 LINE L2 -246 3067 3009 2069 109 10 0 chr3 22687744 22688037 -204836541 + AluSq SINE Alu 6 301 -12 598 277 84 97 chr3 22688037 22688198 -204836380 - L2 LINE L2 -304 3009 2854 251 255 29 10 chr3 22688292 22688394 -204836184 + (CATATA)n Simple_repeat Simple_repeat 3 106 0 1737 157 10 7 chr3 22688597 22688890 -204835688 - AluJb SINE Alu -18 294 1 438 161 17 145 chr3 22688891 22689122 -204835456 + L1MEc LINE L1 2390 2474 -3952 959 174 24 0 chr3 22689127 22689294 -204835284 + FAM SINE Alu 1 43 -6 1345 158 3 101 chr3 22689297 22689625 -204834953 + AluY SINE Alu 1 296 -15 263 228 96 52 chr3 22689626 22689762 -204834816 + L1MEc LINE L1 2555 2696 -3730 905 143 0 0 chr3 22689762 22689895 -204834683 + FLAM_C SINE Alu 1 133 0 183 114 0 0 chr3 22689895 22689930 -204834648 + (CAAG)n Simple_repeat Simple_repeat 2 36 0 277 32 0 0 chr3 22689943 22689974 -204834604 + U2 snRNA snRNA 1 31 -157 394 199 46 46 chr3 22689974 22690105 -204834473 + L1MEc LINE L1 2690 2820 -3606 448 297 130 0 chr3 22690113 22690305 -204834273 - L3 LINE CR1 -802 775 559 797 272 95 9 chr3 22690326 22690558 -204834020 - MIR SINE MIR -4 258 7 1675 122 7 22 chr3 22691565 22691836 -204832742 + AluSx SINE Alu 1 267 -45 2297 93 3 0 chr3 22691857 22692169 -204832409 + AluSq SINE Alu 1 313 0 6093 189 47 38 chr3 22692184 22692897 -204831681 + L1MB7 LINE L1 3584 4290 -1856 1314 191 57 7 chr3 22692897 22693180 -204831398 + AluJo SINE Alu 1 297 -15 2250 92 3 9 chr3 22693180 22693495 -204831083 + AluSq SINE Alu 1 313 0 6093 189 47 38 chr3 22693495 22693701 -204830877 + L1MB7 LINE L1 4290 4493 -1653 2328 77 7 0 chr3 22693701 22694000 -204830578 + AluY SINE Alu 1 301 -10 6093 189 47 38 chr3 22694000 22694262 -204830316 + L1MB7 LINE L1 4493 4751 -1395 3578 140 29 27 chr3 22694262 22694927 -204829651 + L1MA7 LINE L1 5621 6286 -5 6093 189 47 38 chr3 22694927 22695309 -204829269 + L1MB7 LINE L1 4751 5163 -983 819 214 0 42 chr3 22695309 22695477 -204829101 - AluJb SINE Alu -21 291 131 2265 87 3 0 chr3 22695480 22695780 -204828798 - AluSp SINE Alu -12 301 1 1429 164 38 24 chr3 22695790 22696082 -204828496 - AluJb SINE Alu -13 299 4 4700 157 80 6 chr3 22696087 22697030 -204827548 + L1MB7 LINE L1 5153 6165 -19 1864 150 49 15 chr3 22697431 22697758 -204826820 - MER7A DNA MER2_type 0 346 11 2172 76 28 0 chr3 22697953 22698244 -204826334 + AluY SINE Alu 1 299 -12 3890 165 76 17 chr3 22698506 22699122 -204825456 + L1MB7 LINE L1 5010 5714 -470 216 0 0 0 chr3 22699122 22699146 -204825432 + (CA)n Simple_repeat Simple_repeat 2 25 0 3890 165 76 17 chr3 22699146 22699562 -204825016 + L1MB7 LINE L1 5714 6104 -80 2276 100 0 10 chr3 22699999 22700300 -204824278 - AluSp SINE Alu -15 298 1 565 229 0 0 chr3 22700301 22700410 -204824168 + AluJo/FRAM SINE Alu 203 311 -1 807 178 85 96 chr3 22700427 22700616 -204823962 - LTR56 LTR ERV1 -160 285 95 2104 135 3 6 chr3 22700616 22700927 -204823651 - AluJb SINE Alu -2 310 1 306 0 0 0 chr3 22700936 22700970 -204823608 + (TTTAA)n Simple_repeat Simple_repeat 3 36 0 2391 89 0 0 chr3 22700970 22701262 -204823316 - AluSx SINE Alu -20 292 1 807 178 85 96 chr3 22701262 22701342 -204823236 - LTR56 LTR ERV1 -356 89 8 2111 189 29 2 chr3 22701342 22701755 -204822823 + L1MB4 LINE L1 5753 6176 -4 1615 144 12 0 chr3 22701767 22702024 -204822554 - MER84 LTR ERVI -2 505 246 989 80 0 0 chr3 22702024 22702149 -204822429 + AluSp/q SINE Alu 177 301 -12 1699 108 8 0 chr3 22702150 22702391 -204822187 - MER84 LTR ERVI -264 243 1 409 219 169 15 chr3 22702396 22702597 -204821981 - L2 LINE L2 -423 2891 2660 508 153 138 102 chr3 22703441 22703533 -204821045 + L2 LINE L2 2371 2458 -856 1997 133 0 13 chr3 22703533 22703834 -204820744 - AluJb SINE Alu -15 297 1 508 153 138 102 chr3 22703834 22703937 -204820641 + L2 LINE L2 2458 2573 -741 3938 162 25 32 chr3 22703937 22704659 -204819919 + LTR62 LTR ERVK 1 717 -2 908 124 0 0 chr3 22705734 22705881 -204818697 + AluSg/x SINE Alu 164 310 0 1733 188 3 7 chr3 22706502 22706800 -204817778 + AluSx SINE Alu 1 297 -15 2360 86 0 0 chr3 22707731 22708021 -204816557 - AluSq SINE Alu -19 294 5 255 214 18 0 chr3 22708648 22708704 -204815874 + L2 LINE L2 3248 3304 -9 339 258 22 0 chr3 22708719 22708808 -204815770 + MIR SINE MIR 82 172 -90 580 222 89 104 chr3 22708849 22709187 -204815391 - MLT1J1 LTR MaLR -110 336 4 3058 141 9 50 chr3 22709205 22709751 -204814827 + LTR26B LTR ERV1 1 524 -7 344 167 0 13 chr3 22709943 22710021 -204814557 + CT-rich Low_complexity Low_complexity 1 77 0 2408 93 3 3 chr3 22710417 22710729 -204813849 - AluSp SINE Alu -1 312 1 1451 214 121 67 chr3 22711024 22711472 -204813106 - MLT1H LTR MaLR -6 543 72 2121 132 82 6 chr3 22711481 22711837 -204812741 - MLT1B LTR MaLR -7 383 1 699 193 132 24 chr3 22712624 22712837 -204811741 + MIR SINE MIR 25 260 -2 1708 146 39 29 chr3 22712850 22713159 -204811419 - AluJo SINE Alu 0 312 1 2610 47 0 0 chr3 22713744 22714045 -204810533 + AluY SINE Alu 1 301 -10 1486 197 3 27 chr3 22714431 22714726 -204809852 - AluJo SINE Alu -24 288 1 31 0 0 0 chr3 22714764 22714795 -204809783 + AT_rich Low_complexity Low_complexity 1 31 0 263 301 80 53 chr3 22715234 22715496 -204809082 + L3 LINE CR1 1308 1576 -1 418 248 10 10 chr3 22716296 22716397 -204808181 - LTR16B LTR ERVL 0 464 364 826 176 28 28 chr3 22716405 22716587 -204807991 + MER53 DNA DNA 2 183 -6 535 268 68 29 chr3 22716585 22716667 -204807911 - LTR16B LTR ERVL -102 362 285 * 2134 181 82 19 chr3 22716667 22717141 -204807437 + MLT1D LTR MaLR 2 505 0 535 268 68 29 chr3 22717141 22717377 -204807201 - LTR16B LTR ERVL -179 285 1 313 215 25 0 chr3 22717388 22717467 -204807111 - MIR SINE MIR -111 151 71 550 215 35 105 chr3 22717467 22717667 -204806911 - MER20 DNA MER1_type -33 186 1 380 304 54 22 chr3 22717696 22717880 -204806698 + MIR SINE MIR 41 230 -32 2234 122 0 0 chr3 22717883 22718187 -204806391 - AluSx SINE Alu -8 304 1 196 368 8 0 chr3 22719366 22719499 -204805079 - L2 LINE L2 -1026 2288 2155 1375 132 54 0 chr3 22719527 22719732 -204804846 - AluSx SINE Alu -96 216 1 25 31 0 0 chr3 22719732 22719764 -204804814 + AT_rich Low_complexity Low_complexity 1 32 0 1484 93 10 5 chr3 22719964 22720158 -204804420 + AluSx SINE Alu 3 197 -115 271 198 49 31 chr3 22720243 22720366 -204804212 + L2 LINE L2 2921 3047 -266 262 248 168 32 chr3 22720596 22720721 -204803857 - MIR SINE MIR -115 147 6 641 163 7 0 chr3 22721756 22721891 -204802687 + (TCCA)n Simple_repeat Simple_repeat 1 136 0 272 300 12 0 chr3 22721891 22721971 -204802607 + (CCCA)n Simple_repeat Simple_repeat 4 84 0 450 278 0 0 chr3 22721971 22722151 -204802427 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 452 277 92 11 chr3 22722249 22722433 -204802145 + MIR SINE MIR 12 210 -52 2217 129 3 0 chr3 22723091 22723402 -204801176 + AluSx SINE Alu 1 312 0 264 206 175 0 chr3 22723744 22723841 -204800737 + MIR SINE MIR 31 144 -118 1910 140 21 11 chr3 22724315 22724601 -204799977 - AluJb SINE Alu -23 289 1 435 239 99 67 chr3 22724603 22724917 -204799661 - L1MC5 LINE L1 -28 7933 7610 2226 106 0 20 chr3 22725054 22725356 -204799222 + AluSc SINE Alu 1 296 -13 1901 124 4 4 chr3 22725944 22726209 -204798369 + AluSx SINE Alu 1 265 -47 355 153 92 20 chr3 22726281 22726379 -204798199 - HAL1b LINE L1 -28 1320 1216 512 200 72 33 chr3 22726431 22726611 -204797967 - HAL1b LINE L1 -222 1126 940 946 276 113 11 chr3 22727113 22727563 -204797015 - HAL1b LINE L1 -415 933 438 2353 85 0 16 chr3 22727566 22727882 -204796696 - AluY SINE Alu 0 311 1 228 312 83 0 chr3 22727943 22728052 -204796526 - HAL1b LINE L1 -734 614 497 225 268 49 0 chr3 22728155 22728237 -204796341 - L2 LINE L2 -220 3052 2967 1296 189 41 144 chr3 22728252 22728711 -204795867 + MLT2B1 LTR ERVL 3 414 0 192 77 0 0 chr3 22729094 22729120 -204795458 + (TGG)n Simple_repeat Simple_repeat 2 27 0 587 89 0 0 chr3 22729288 22729367 -204795211 + MADE1 DNA Mariner 2 80 0 619 337 30 26 chr3 22730722 22731025 -204793553 + MLT1I LTR MaLR 103 406 -3 378 0 0 0 chr3 22731039 22731081 -204793497 + (TG)n Simple_repeat Simple_repeat 1 42 0 781 221 19 33 chr3 22732238 22732451 -204792127 - MER20 DNA MER1_type -9 210 1 282 196 69 143 chr3 22732509 22732609 -204791969 + L1ME3A LINE L1 5996 6077 -93 1797 153 6 31 chr3 22732609 22732929 -204791649 - AluJo SINE Alu 0 312 1 282 196 69 143 chr3 22732929 22733017 -204791561 + L1ME3A LINE L1 6077 6170 0 1966 148 10 3 chr3 22733370 22733660 -204790918 - AluSx SINE Alu -18 294 3 2165 113 10 0 chr3 22733869 22734161 -204790417 + AluSx SINE Alu 1 295 -17 1669 196 3 13 chr3 22734816 22734978 -204789600 - L1M3 LINE L1 -528 5652 5495 2262 117 0 7 chr3 22734978 22735286 -204789292 - AluSx SINE Alu -6 306 1 1669 196 3 13 chr3 22735286 22735450 -204789128 - L1M3 LINE L1 -685 5495 5331 952 264 135 38 chr3 22735450 22735871 -204788707 + L1ME1 LINE L1 5652 6113 -53 1094 197 14 27 chr3 22735943 22736166 -204788412 + AluJo SINE Alu 1 220 -92 386 111 0 0 chr3 22736166 22736220 -204788358 + AluSg/x SINE Alu 84 137 -163 1170 149 11 0 chr3 22737098 22737272 -204787306 + AluSg/x SINE Alu 130 305 -7 885 169 0 20 chr3 22737276 22737424 -204787154 + FRAM SINE Alu 2 146 -30 444 118 0 0 chr3 22737426 22737494 -204787084 + (CATA)n Simple_repeat Simple_repeat 2 69 0 190 268 173 31 chr3 22737666 22737793 -204786785 - MIR SINE MIR -25 237 93 2604 152 18 25 chr3 22737794 22738241 -204786337 - L1MA7 LINE L1 -233 6058 5615 1049 153 88 0 chr3 22738241 22738452 -204786126 + L1MA7 LINE L1 6051 6285 -6 183 233 35 81 chr3 22738470 22738556 -204786022 - MIR SINE MIR -156 106 25 183 80 0 0 chr3 22739324 22739349 -204785229 + (T)n Simple_repeat Simple_repeat 1 25 0 189 238 29 143 chr3 22739413 22739518 -204785060 - L2 LINE L2 -7 3265 3173 2842 201 27 55 chr3 22740391 22741232 -204783346 - LTR5 LTR ERVK 0 969 152 283 409 0 24 chr3 22741782 22741909 -204782669 + L2 LINE L2 3143 3266 -6 185 420 0 0 chr3 22742138 22742219 -204782359 + MIR SINE MIR 19 99 -109 496 311 30 0 chr3 22742465 22742629 -204781949 + MIR SINE MIR 88 256 -6 847 96 0 59 chr3 22742867 22743003 -204781575 + L1M3 LINE L1 5454 5581 -590 192 123 82 0 chr3 22743181 22743254 -204781324 + (TA)n Simple_repeat Simple_repeat 2 80 0 854 247 119 24 chr3 22743484 22743999 -204780579 + MLT1G1 LTR MaLR 1 515 -15 1351 131 58 0 chr3 22744289 22744549 -204780029 + MER33 DNA MER1_type 37 311 -13 1830 213 52 56 chr3 22745118 22745588 -204778990 + Charlie1b DNA MER1_type 1 470 -2291 1744 156 19 6 chr3 22745588 22745908 -204778670 + L1MA9 LINE L1 5984 6307 -5 1830 213 52 56 chr3 22745908 22745958 -204778620 + Charlie1b DNA MER1_type 470 519 -4 281 311 102 22 chr3 22748077 22748278 -204776300 + MIR SINE MIR 30 244 -18 24 0 0 0 chr3 22748506 22748530 -204776048 + AT_rich Low_complexity Low_complexity 1 24 0 268 267 27 0 chr3 22749061 22749136 -204775442 + MLT1I LTR MaLR 1 77 -332 827 248 181 26 chr3 22749201 22749471 -204775107 + MLT1I LTR MaLR 88 399 -10 387 290 34 34 chr3 22749638 22749845 -204774733 - L1ME LINE L1 -389 5732 5526 509 344 44 6 chr3 22750050 22750233 -204774345 + MER91A DNA MER1_type 2 191 -5 254 328 0 0 chr3 22750804 22750868 -204773710 + polypurine Low_complexity Low_complexity 4 67 0 267 198 55 0 chr3 22750887 22750978 -204773600 + GA-rich Low_complexity Low_complexity 1 96 0 232 234 187 28 chr3 22751755 22751862 -204772716 + L2 LINE L2 3189 3312 -1 420 221 100 57 chr3 22752386 22752526 -204772052 + MLT1I LTR MaLR 404 549 0 190 393 160 19 chr3 22752533 22752846 -204771732 + L2 LINE L2 2915 3271 -1 312 197 56 0 chr3 22753211 22753282 -204771296 + MER94 DNA DNA 48 122 -12 259 297 0 55 chr3 22753812 22753903 -204770675 + MIR3 SINE MIR 122 207 -1 1374 186 52 42 chr3 22754357 22754663 -204769915 + AluJo SINE Alu 1 309 -3 382 287 72 63 chr3 22754715 22754938 -204769640 + MIR SINE MIR 4 228 -34 302 237 10 0 chr3 22755514 22755611 -204768967 + (CTATA)n Simple_repeat Simple_repeat 1 98 0 612 91 0 0 chr3 22755613 22755701 -204768877 + (CCTAT)n Simple_repeat Simple_repeat 2 89 0 459 223 273 0 chr3 22755704 22755843 -204768735 + MER5A DNA MER1_type 9 185 -4 6835 58 9 43 chr3 22756890 22757877 -204766701 - SVA Other Other 0 1386 433 5690 77 31 15 chr3 22757890 22758841 -204765737 - SVA Other Other -520 866 1 725 241 52 94 chr3 22759083 22759126 -204765452 - HAL1 LINE L1 -100 2407 2364 2498 61 3 0 chr3 22759126 22759423 -204765155 - AluY SINE Alu -12 299 2 725 241 52 94 chr3 22759423 22759485 -204765093 - HAL1 LINE L1 -143 2364 2301 1990 149 10 19 chr3 22759485 22759794 -204764784 - AluJo SINE Alu -6 306 1 725 241 52 94 chr3 22759794 22760069 -204764509 - HAL1 LINE L1 -206 2301 2042 234 282 68 8 chr3 22760159 22760276 -204764302 - L1ME2 LINE L1 -2 6162 6039 416 176 110 0 chr3 22760796 22760887 -204763691 + MER58C DNA MER1_type 113 213 -2 376 130 0 0 chr3 22760952 22761006 -204763572 + MER66A LTR ERV1 287 340 -138 304 272 54 22 chr3 22762460 22762552 -204762026 + L2 LINE L2 3206 3300 -13 536 249 157 19 chr3 22762662 22762923 -204761655 + L1ME4a LINE L1 5531 5827 -294 1877 186 0 3 chr3 22762986 22763293 -204761285 - AluJb SINE Alu -6 306 1 450 214 83 36 chr3 22763308 22763476 -204761102 + L1ME4a LINE L1 5946 6121 0 671 208 193 24 chr3 22763671 22763883 -204760695 + MIR SINE MIR 5 252 -10 336 257 59 33 chr3 22763928 22764080 -204760498 + L1ME4a LINE L1 5573 5728 -393 351 216 29 20 chr3 22764199 22764301 -204760277 + L1ME4a LINE L1 5786 5888 -233 572 249 11 58 chr3 22764325 22764514 -204760064 + L2 LINE L2 3125 3304 -9 27 54 0 40 chr3 22764744 22764793 -204759785 + AT_rich Low_complexity Low_complexity 1 48 -23 2277 100 7 0 chr3 22764793 22765094 -204759484 - AluSx SINE Alu -9 303 1 27 54 0 40 chr3 22765094 22765118 -204759460 + AT_rich Low_complexity Low_complexity 48 71 0 581 177 0 146 chr3 22765690 22765848 -204758730 + FLAM_C SINE Alu 2 136 -7 563 273 136 14 chr3 22765926 22766146 -204758432 + MIR SINE MIR 3 249 -13 27 49 0 0 chr3 22766292 22766333 -204758245 + AT_rich Low_complexity Low_complexity 1 41 0 31 0 0 0 chr3 22766521 22766552 -204758026 + AT_rich Low_complexity Low_complexity 1 31 0 3167 83 40 11 chr3 22767141 22767588 -204756990 + L1PA14 LINE L1 5700 6159 -2 757 186 111 42 chr3 22768040 22768278 -204756300 + MER33 DNA MER1_type 1 242 -82 1269 62 0 12 chr3 22768279 22768439 -204756139 - AluSp/q SINE Alu 0 313 156 481 173 25 0 chr3 22769773 22769854 -204754724 + MER5A DNA MER1_type 30 112 -77 933 194 31 47 chr3 22769906 22770097 -204754481 - MER5A DNA MER1_type 0 189 2 2338 85 0 0 chr3 22770253 22770546 -204754032 - AluSg SINE Alu -17 293 1 1358 173 35 0 chr3 22770747 22770973 -204753605 - MER46A DNA MER2_type -1 235 2 204 280 103 28 chr3 22771810 22771917 -204752661 + MIR SINE MIR 37 151 -111 2262 98 3 13 chr3 22772752 22773068 -204751510 + AluSp SINE Alu 1 313 0 2572 117 0 18 chr3 22774206 22774549 -204750029 - MER1B DNA MER1_type 0 337 1 1569 186 13 52 chr3 22774591 22774898 -204749680 + AluJo SINE Alu 1 295 -17 3311 119 75 128 chr3 22775260 22776052 -204748526 - Tigger3(Golem) DNA MER2_type -1 3028 2279 549 229 0 9 chr3 22776045 22776154 -204748424 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 1772 139 28 24 chr3 22776406 22776693 -204747885 + AluJo SINE Alu 1 288 -24 23 0 0 0 chr3 22776765 22776788 -204747790 + AT_rich Low_complexity Low_complexity 1 23 0 2413 81 7 3 chr3 22776824 22777133 -204747445 - AluY SINE Alu -1 310 1 216 0 0 0 chr3 22777569 22777593 -204746985 + (T)n Simple_repeat Simple_repeat 1 24 0 354 313 181 6 chr3 22778387 22778553 -204746025 - MIR SINE MIR -48 214 20 856 156 6 60 chr3 22778805 22778972 -204745606 + MER3 DNA MER1_type 1 158 -51 2025 145 0 0 chr3 22779642 22779938 -204744640 + AluJb SINE Alu 2 297 -15 212 337 147 18 chr3 22781185 22781458 -204743120 + L2 LINE L2 2669 2976 -338 763 291 199 12 chr3 22781579 22782027 -204742551 - L2 LINE L2 -3 3310 2783 1013 272 110 53 chr3 22782077 22782440 -204742138 - L2 LINE L2 -998 2316 1903 1780 74 4 13 chr3 22782440 22782671 -204741907 + L1PA14 LINE L1 5927 6155 -6 1013 272 110 53 chr3 22782671 22782914 -204741664 - L2 LINE L2 -1411 1903 1675 194 250 159 11 chr3 22782914 22783002 -204741576 + L2 LINE L2 3182 3282 -31 311 277 50 43 chr3 22783083 22783224 -204741354 - MIR SINE MIR -43 219 78 323 249 66 76 chr3 22783451 22783648 -204740930 + L1ME4a LINE L1 5704 5898 -223 27 49 0 0 chr3 22783870 22783911 -204740667 + AT_rich Low_complexity Low_complexity 1 41 0 2026 127 13 13 chr3 22784659 22784958 -204739620 - AluSx SINE Alu -13 299 1 344 352 62 25 chr3 22785151 22785313 -204739265 - MIR3 SINE MIR -13 195 28 689 285 107 0 chr3 22786249 22786512 -204738066 + L1ME3A LINE L1 4824 5114 -1032 2833 40 3 9 chr3 22786563 22786932 -204737646 + L1PA2 LINE L1 5813 6179 0 499 238 147 113 chr3 22786973 22787415 -204737163 + L1ME3A LINE L1 5714 6170 0 1744 151 13 38 chr3 22787432 22787750 -204736828 + AluJb SINE Alu 3 312 0 307 336 96 18 chr3 22788233 22788462 -204736116 - L1M4 LINE L1 -1103 5043 4797 2065 116 13 39 chr3 22788483 22788794 -204735784 - AluSx SINE Alu -9 303 1 585 188 37 126 chr3 22788797 22788974 -204735604 - MLT1B LTR MaLR -216 158 4 389 291 101 32 chr3 22789058 22789216 -204735362 - MIR3 SINE MIR -9 199 31 239 184 40 53 chr3 22789419 22789495 -204735083 - LTR33A LTR ERVL -152 371 297 306 278 28 46 chr3 22789742 22789850 -204734728 - LTR33A LTR ERVL -361 162 57 900 157 0 8 chr3 22789886 22790020 -204734558 + FLAM_C SINE Alu 1 133 0 1736 207 50 16 chr3 22790357 22790734 -204733844 - MLT1B LTR MaLR 0 390 1 2075 120 13 17 chr3 22790777 22791078 -204733500 - AluSx SINE Alu -12 300 1 206 323 0 0 chr3 22792536 22792601 -204731977 + (CTG)n Simple_repeat Simple_repeat 1 65 0 369 219 133 0 chr3 22794273 22794378 -204730200 + MIR3 SINE MIR 45 163 -45 349 291 108 25 chr3 22794660 22794818 -204729760 - MIR SINE MIR 0 262 92 430 209 55 9 chr3 22794867 22794977 -204729601 + MER103 DNA DNA 50 164 -2 917 201 86 0 chr3 22795708 22795882 -204728696 - MER5A DNA MER1_type 0 189 1 200 184 0 0 chr3 22798641 22798679 -204725899 + (CAGCC)n Simple_repeat Simple_repeat 1 38 0 2090 95 14 3 chr3 22798723 22799008 -204725570 + AluSc SINE Alu 3 290 -19 2042 140 0 0 chr3 22799017 22799303 -204725275 + AluSx SINE Alu 1 286 -26 198 128 0 0 chr3 22799303 22799342 -204725236 + (TA)n Simple_repeat Simple_repeat 2 40 0 1007 248 91 22 chr3 22800527 22800890 -204723688 + LTR37A LTR ERV1 39 426 0 1479 150 35 35 chr3 22801572 22801859 -204722719 + AluSx SINE Alu 1 287 -25 23 0 0 0 chr3 22801931 22801954 -204722624 + AT_rich Low_complexity Low_complexity 1 23 0 2259 81 10 3 chr3 22801990 22802298 -204722280 - AluY SINE Alu -1 310 1 216 0 0 0 chr3 22802734 22802758 -204721820 + (T)n Simple_repeat Simple_repeat 1 24 0 412 283 182 31 chr3 22803552 22803740 -204720838 - MIR SINE MIR -48 214 3 839 156 6 60 chr3 22803971 22804138 -204720440 + MER3 DNA MER1_type 1 158 -51 358 96 0 0 chr3 22805177 22805229 -204719349 + MADE1 DNA Mariner 29 80 0 605 205 93 25 chr3 22805351 22805495 -204719083 + MER3 DNA MER1_type 1 112 -50 1837 156 0 0 chr3 22805495 22805783 -204718795 + AluJb SINE Alu 1 288 -24 605 205 93 25 chr3 22805783 22805799 -204718779 + MER3 DNA MER1_type 112 125 -37 626 87 0 39 chr3 22805806 22805909 -204718669 - AluSc SINE Alu -13 296 198 333 143 0 0 chr3 22805922 22805971 -204718607 + MER3 DNA MER1_type 161 209 0 547 252 16 0 chr3 22806783 22806906 -204717672 + MER94 DNA DNA 10 134 0 1390 204 77 34 chr3 22807530 22807883 -204716695 - L1MC4 LINE L1 -159 7883 7516 2351 68 0 0 chr3 22807894 22808186 -204716392 - AluSg SINE Alu -7 303 12 340 222 61 40 chr3 22808293 22808392 -204716186 + U13 snRNA snRNA 1 101 -3 324 301 113 8 chr3 22809579 22809712 -204714866 + MIR SINE MIR 61 207 -55 2196 107 0 0 chr3 22809931 22810231 -204714347 + AluSg SINE Alu 1 300 -10 744 179 0 57 chr3 22810238 22810378 -204714200 + FLAM_C SINE Alu 1 132 -1 2334 76 0 0 chr3 22810382 22810686 -204713892 + AluY SINE Alu 2 305 -6 892 251 116 19 chr3 22810708 22811027 -204713551 + MLT1G1 LTR MaLR 246 595 0 303 291 68 17 chr3 22811027 22811144 -204713434 + L2 LINE L2 2883 3005 -308 999 255 97 118 chr3 22811213 22811731 -204712847 + MLT1K LTR MaLR 57 563 -25 398 147 15 0 chr3 22811780 22811848 -204712730 - MER116 DNA Mariner 0 80 12 248 360 43 43 chr3 22811852 22811953 -204712625 - L3 LINE CR1 -113 1464 1364 1356 196 60 4 chr3 22811953 22812218 -204712360 + AluJo SINE Alu 3 282 -30 447 52 0 0 chr3 22812225 22812283 -204712295 + (CA)n Simple_repeat Simple_repeat 2 59 0 248 360 43 43 chr3 22812283 22812337 -204712241 - L3 LINE CR1 -218 1359 1301 216 266 102 31 chr3 22812456 22812584 -204711994 - L3 LINE CR1 -656 921 785 495 92 0 0 chr3 22812593 22812658 -204711920 - AluJ/FRAM SINE Alu -15 297 233 490 316 96 36 chr3 22812809 22813059 -204711519 - L3 LINE CR1 -877 700 436 868 302 115 12 chr3 22813128 22813529 -204711049 - MLT1J2 LTR MaLR -8 442 1 539 101 13 0 chr3 22816572 22816651 -204707927 - AluSc SINE Alu -228 81 2 1438 169 20 24 chr3 22816680 22816975 -204707603 + AluJo SINE Alu 1 294 -18 1982 131 0 10 chr3 22816977 22817275 -204707303 + AluSx SINE Alu 1 295 -17 310 241 145 28 chr3 22819426 22819571 -204705007 - MIR SINE MIR -17 245 84 1005 106 0 0 chr3 22820654 22820795 -204703783 - AluJb SINE Alu -171 141 1 532 217 68 62 chr3 22821025 22821186 -204703392 + MER5B DNA MER1_type 4 165 -13 206 323 0 0 chr3 22822782 22822847 -204701731 + (CTG)n Simple_repeat Simple_repeat 1 65 0 376 221 97 71 chr3 22824511 22824665 -204699913 + MIR3 SINE MIR 34 168 -40 386 291 108 25 chr3 22824905 22825063 -204699515 - MIR SINE MIR 0 262 92 427 209 55 9 chr3 22825112 22825222 -204699356 + MER103 DNA DNA 50 164 -2 866 201 86 0 chr3 22825954 22826128 -204698450 - MER5A DNA MER1_type 0 189 1 200 184 0 0 chr3 22828887 22828925 -204695653 + (CAGCC)n Simple_repeat Simple_repeat 1 38 0 1992 95 14 3 chr3 22828969 22829254 -204695324 + AluSc SINE Alu 3 290 -19 1946 140 0 0 chr3 22829263 22829549 -204695029 + AluSx SINE Alu 1 286 -26 198 128 0 0 chr3 22829549 22829588 -204694990 + (TA)n Simple_repeat Simple_repeat 2 40 0 976 243 91 19 chr3 22830773 22831135 -204693443 + LTR37A LTR ERV1 39 426 0 1997 103 0 7 chr3 22831819 22832100 -204692478 + AluSx SINE Alu 1 279 -33 486 0 0 0 chr3 22832100 22832154 -204692424 + (CA)n Simple_repeat Simple_repeat 1 54 0 419 287 69 0 chr3 22834243 22834344 -204690234 + MER91C DNA MER1_type 1 108 -32 1748 172 55 44 chr3 22835308 22835669 -204688909 + MLT1A1 LTR MaLR 1 365 0 411 309 42 16 chr3 22836849 22837040 -204687538 - MIR3 SINE MIR -11 197 2 577 184 92 36 chr3 22837204 22837244 -204687334 + MER33 DNA MER1_type 29 65 -2520 2123 105 20 0 chr3 22837244 22837538 -204687040 + AluSx SINE Alu 1 300 -12 577 184 92 36 chr3 22837538 22837693 -204686885 + MER33 DNA MER1_type 65 235 -89 1254 229 57 7 chr3 22837693 22837972 -204686606 + AluJo SINE Alu 2 294 -8 2199 105 0 3 chr3 22837993 22838288 -204686290 + AluSg SINE Alu 1 294 -16 248 297 0 11 chr3 22838299 22838390 -204686188 + MER33 DNA MER1_type 230 319 -5 373 179 15 0 chr3 22838591 22838658 -204685920 + MER66A LTR ERV1 411 478 0 346 216 0 181 chr3 22838666 22838837 -204685741 - L1MEd LINE L1 -5092 1027 888 2266 97 0 0 chr3 22838850 22839150 -204685428 + AluSg SINE Alu 6 305 -5 186 43 0 0 chr3 22839287 22839310 -204685268 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 293 288 38 72 chr3 22839331 22839461 -204685117 - L1MEd LINE L1 -5306 813 693 1922 128 27 3 chr3 22839461 22839757 -204684821 - AluSx SINE Alu -9 303 1 293 288 38 72 chr3 22839757 22839862 -204684716 - L1MEd LINE L1 -5426 693 586 247 333 28 0 chr3 22840238 22840310 -204684268 + MIR3 SINE MIR 82 155 -53 467 289 160 0 chr3 22840315 22840471 -204684107 - MER5A DNA MER1_type 0 189 9 188 359 26 0 chr3 22840548 22840626 -204683952 + L2 LINE L2 2973 3052 -220 298 292 14 0 chr3 22840726 22840798 -204683780 + L2 LINE L2 3241 3313 0 2477 43 0 0 chr3 22841333 22841633 -204682945 - AluY SINE Alu -11 300 1 1863 129 0 18 chr3 22842423 22842709 -204681869 + AluSx SINE Alu 1 281 -31 468 0 0 0 chr3 22842709 22842761 -204681817 + (CA)n Simple_repeat Simple_repeat 1 52 0 419 287 69 0 chr3 22844849 22844950 -204679628 - MER91C DNA MER1_type 0 140 33 1748 172 55 44 chr3 22845913 22846274 -204678304 + MLT1A1 LTR MaLR 1 365 0 411 309 42 16 chr3 22847453 22847644 -204676934 - MIR3 SINE MIR -11 197 2 571 185 92 36 chr3 22847808 22847848 -204676730 + MER33 DNA MER1_type 29 65 -2520 2123 105 20 0 chr3 22847848 22848142 -204676436 + AluSx SINE Alu 1 300 -12 571 185 92 36 chr3 22848142 22848296 -204676282 + MER33 DNA MER1_type 65 234 -90 944 249 65 0 chr3 22848296 22848557 -204676021 + AluJo SINE Alu 1 278 -34 245 220 47 33 chr3 22848748 22848898 -204675680 - L1M4 LINE L1 -1703 4443 4292 30 45 0 0 chr3 22849347 22849391 -204675187 + AT_rich Low_complexity Low_complexity 1 44 0 258 333 38 57 chr3 22849536 22849746 -204674832 - L2 LINE L2 -109 3163 2958 625 242 62 11 chr3 22849845 22850023 -204674555 - MER5A DNA MER1_type -2 187 1 1647 99 0 5 chr3 22850486 22850708 -204673870 + AluSq SINE Alu 1 221 -92 * 2120 102 0 4 chr3 22850707 22850982 -204673596 + AluSx SINE Alu 24 297 -15 384 163 174 81 chr3 22851658 22851830 -204672748 - MER53 DNA DNA 0 189 2 2452 89 3 0 chr3 22852835 22853138 -204671440 + AluSp SINE Alu 1 304 -9 192 171 29 0 chr3 22853905 22853940 -204670638 - L2 LINE L2 -14 3299 3264 225 257 68 152 chr3 22853943 22854064 -204670514 + MIR SINE MIR 33 126 -136 2487 99 0 0 chr3 22854064 22854376 -204670202 + AluSx SINE Alu 1 312 0 225 257 68 152 chr3 22854376 22854491 -204670087 + MIR SINE MIR 126 249 -13 297 0 0 0 chr3 22854559 22854592 -204669986 + (TG)n Simple_repeat Simple_repeat 1 33 0 215 250 21 0 chr3 22854622 22854670 -204669908 + MIR SINE MIR 196 244 -18 225 133 44 0 chr3 22854677 22854722 -204669856 + CT-rich Low_complexity Low_complexity 1 47 0 2368 211 2 2 chr3 22855464 22855915 -204668663 - MER82 DNA MER2_type 0 653 203 1095 197 5 0 chr3 22856239 22856432 -204668146 - MER82 DNA MER2_type -459 194 1 255 61 0 0 chr3 22856605 22856638 -204667940 + (CA)n Simple_repeat Simple_repeat 1 33 0 380 296 43 9 chr3 22856719 22856834 -204667744 + L2 LINE L2 3194 3312 -1 1617 185 39 45 chr3 22856956 22857264 -204667314 - AluJb SINE Alu -6 306 1 667 257 170 44 chr3 22857821 22858226 -204666352 + MLT1H LTR MaLR 94 549 0 1893 141 31 10 chr3 22858230 22858520 -204666058 - AluJo SINE Alu -1 311 16 391 184 54 12 chr3 22858525 22858627 -204665951 - MIR SINE MIR -46 162 50 1876 121 80 39 chr3 22858837 22859225 -204665353 + L1MB3 LINE L1 5740 6143 -40 257 200 0 0 chr3 22859247 22859297 -204665281 + L1MB2 LINE L1 6115 6164 -7 1231 183 5 36 chr3 22859751 22859975 -204664603 - AluJo SINE Alu -10 302 86 513 194 62 44 chr3 22860226 22860386 -204664192 - L1MC4 LINE L1 -139 7903 7741 700 275 116 72 chr3 22861630 22862019 -204662559 - L2 LINE L2 0 3313 2908 251 343 84 14 chr3 22862257 22862400 -204662178 - L3b LINE CR1 -100 1483 1331 2246 103 3 19 chr3 22863058 22863370 -204661208 - AluSx SINE Alu -5 307 1 203 196 22 0 chr3 22863600 22863646 -204660932 + L2 LINE L2 3210 3256 -16 189 171 0 0 chr3 22863942 22863977 -204660601 + A-rich Low_complexity Low_complexity 1 35 0 652 240 13 7 chr3 22864635 22864789 -204659789 + MER3 DNA MER1_type 1 155 -54 2164 131 0 0 chr3 22864792 22865090 -204659488 + AluSx SINE Alu 4 301 -11 1426 105 5 0 chr3 22865197 22865387 -204659191 + AluSg/x SINE Alu 106 296 -16 25 0 0 0 chr3 22865394 22865419 -204659159 + AT_rich Low_complexity Low_complexity 1 25 0 317 313 129 79 chr3 22865622 22866025 -204658553 - L2 LINE L2 -14 3258 2836 2455 70 0 10 chr3 22866331 22866633 -204657945 + AluY SINE Alu 1 299 -12 610 189 9 0 chr3 22866661 22866797 -204657781 + AluJb SINE Alu 180 316 0 2008 137 3 17 chr3 22866929 22867229 -204657349 - AluSx SINE Alu -16 296 1 302 265 88 52 chr3 22867727 22867863 -204656715 + MIR SINE MIR 110 250 -12 237 235 68 53 chr3 22868295 22868427 -204656151 + MER102b DNA MER1_type 200 333 -8 723 284 15 20 chr3 22868507 22868711 -204655867 - MIR SINE MIR -17 245 43 243 293 13 0 chr3 22869130 22869205 -204655373 + HAL1 LINE L1 1651 1726 -781 * 602 234 117 12 chr3 22869194 22869450 -204655128 + HAL1 LINE L1 2072 2354 -153 270 30 0 0 chr3 22869594 22869627 -204654951 - U2 snRNA snRNA -155 33 1 982 205 24 0 chr3 22869631 22869797 -204654781 - FAM SINE Alu -3 172 3 193 260 14 82 chr3 22869832 22869905 -204654673 - L2 LINE L2 -575 2739 2672 * 216 254 0 18 chr3 22869877 22869932 -204654646 - MER5B DNA MER1_type -105 73 20 265 290 0 75 chr3 22871345 22871438 -204653140 - L2 LINE L2 0 3272 3187 454 360 40 18 chr3 22871565 22871793 -204652785 - MIR SINE MIR -10 252 20 1575 144 0 0 chr3 22871849 22872078 -204652500 + AluJb SINE Alu 1 229 -83 1147 151 0 22 chr3 22872530 22872709 -204651869 - AluJ SINE Alu -9 303 129 844 137 0 38 chr3 22872727 22872858 -204651720 + FLAM_C SINE Alu 1 126 -7 524 120 40 0 chr3 22872870 22872945 -204651633 - AluJ SINE Alu -176 136 59 1956 147 23 0 chr3 22873361 22873661 -204650917 - AluJb SINE Alu -1 311 5 2718 149 11 7 chr3 22874027 22874484 -204650094 + LTR32 LTR ERVL 12 470 -1 2097 97 4 0 chr3 22874640 22874907 -204649671 + AluSq SINE Alu 5 272 -41 4514 72 40 2 chr3 22874908 22875491 -204649087 - LTR14B LTR ERVK 0 608 4 989 232 29 37 chr3 22875691 22875932 -204648646 - MER8 DNA MER2_type 0 239 1 638 176 21 114 chr3 22875932 22876041 -204648537 + Charlie4 DNA MER1_type 1778 1866 -95 1822 177 0 32 chr3 22876041 22876351 -204648227 + AluJb SINE Alu 1 300 -12 638 176 21 114 chr3 22876351 22876423 -204648155 + Charlie4 DNA MER1_type 1866 1943 -18 244 235 39 0 chr3 22876541 22876592 -204647986 + MIR SINE MIR 29 81 -181 550 215 83 14 chr3 22876637 22876781 -204647797 + MIR SINE MIR 70 223 -39 2239 119 0 0 chr3 22876954 22877247 -204647331 + AluSx SINE Alu 1 293 -19 600 279 59 10 chr3 22877293 22877497 -204647081 - LTR16C LTR ERVL 0 491 278 942 206 47 12 chr3 22878686 22878943 -204645635 + L1ME1 LINE L1 5846 6111 -55 2232 118 7 0 chr3 22878994 22879291 -204645287 + AluSx SINE Alu 1 299 -13 335 91 0 0 chr3 22879292 22879336 -204645242 + Alu SINE Alu 1 44 -258 229 132 0 0 chr3 22879416 22879454 -204645124 - Charlie5 DNA MER1_type -27 2585 2548 1285 194 18 122 chr3 22879458 22879787 -204644791 - AluJb SINE Alu -7 295 1 24 0 0 0 chr3 22879792 22879816 -204644762 + AT_rich Low_complexity Low_complexity 1 24 0 977 132 7 0 chr3 22879819 22879955 -204644623 + AluSq/x SINE Alu 1 137 -176 2284 113 0 3 chr3 22879956 22880248 -204644330 + AluSg SINE Alu 4 294 -16 243 297 0 11 chr3 22880259 22880350 -204644228 + Charlie5 DNA MER1_type 2491 2580 -32 630 109 11 0 chr3 22882412 22882504 -204642074 + MLT1A2 LTR MaLR 1 93 -281 1229 102 0 68 chr3 22882507 22882547 -204642031 - MSTA LTR MaLR -2 426 385 2190 131 0 10 chr3 22882547 22882861 -204641717 + AluSx SINE Alu 1 311 -1 1229 102 0 68 chr3 22882861 22883025 -204641553 - MSTA LTR MaLR -43 385 236 1068 162 0 0 chr3 22883070 22883237 -204641341 - AluSx SINE Alu -2 310 144 1021 104 0 56 chr3 22883296 22883440 -204641138 - AluSx SINE Alu -176 136 1 906 196 42 0 chr3 22883440 22883629 -204640949 - MSTA LTR MaLR -231 197 1 403 174 0 0 chr3 22883629 22883698 -204640880 + MLT1A2 LTR MaLR 90 158 -216 2233 109 13 0 chr3 22884326 22884628 -204639950 + AluSq SINE Alu 1 306 -7 402 253 167 43 chr3 22884863 22885025 -204639553 - MIR3 SINE MIR -17 191 10 2184 78 19 85 chr3 22885539 22885858 -204638720 - AluSq SINE Alu -15 298 1 2319 116 0 0 chr3 22887479 22887782 -204636796 + AluSq SINE Alu 6 308 -5 323 271 32 65 chr3 22888131 22888286 -204636292 + L1MC5 LINE L1 7763 7912 -49 484 36 0 0 chr3 22889774 22889830 -204634748 - AluSg/x SINE Alu -174 136 81 2036 108 0 18 chr3 22890307 22890593 -204633985 + AluSq SINE Alu 1 281 -32 470 259 121 20 chr3 22891234 22891539 -204633039 + L1MC5 LINE L1 7609 7944 -17 2083 138 3 0 chr3 22891702 22892000 -204632578 + AluSx SINE Alu 1 299 -13 233 390 40 0 chr3 22892179 22892279 -204632299 - L3b LINE CR1 -184 1399 1296 315 219 184 9 chr3 22892504 22892618 -204631960 - MIR3 SINE MIR -38 170 37 231 356 79 0 chr3 22893637 22893738 -204630840 + L2 LINE L2 3200 3308 -5 1860 153 27 20 chr3 22895131 22895432 -204629146 - AluJb SINE Alu -9 303 1 187 237 0 26 chr3 22895511 22895549 -204629029 - L2 LINE L2 -86 3186 3150 791 220 49 4 chr3 22895565 22895769 -204628809 + MIR SINE MIR 27 238 -24 1028 185 34 15 chr3 22896054 22896259 -204628319 + MER3 DNA MER1_type 1 209 0 2138 189 12 24 chr3 22896520 22896939 -204627639 - MLT2D LTR ERVL 0 414 1 1733 147 62 7 chr3 22897062 22897354 -204627224 + AluJb SINE Alu 1 308 -4 797 252 125 49 chr3 22897749 22898221 -204626357 + MLT1J LTR MaLR 2 509 -2 2113 111 31 14 chr3 22898707 22898834 -204625744 + AluSx SINE Alu 1 124 -188 2358 96 7 3 chr3 22898834 22899137 -204625441 + AluSg SINE Alu 1 304 -6 2113 111 31 14 chr3 22899137 22899297 -204625281 + AluSx SINE Alu 124 293 -19 459 276 97 42 chr3 22899588 22899805 -204624773 + MLT1K LTR MaLR 162 390 -198 182 361 62 0 chr3 22900468 22900565 -204624013 + MIR SINE MIR 94 196 -66 250 340 11 0 chr3 22900891 22900985 -204623593 + MIR SINE MIR 168 262 0 583 297 80 25 chr3 22901035 22901274 -204623304 - MIR SINE MIR -7 255 4 1838 163 3 36 chr3 22901332 22901638 -204622940 - AluSx SINE Alu -16 296 1 199 333 11 46 chr3 22902077 22902164 -204622414 - L3b LINE CR1 -63 1520 1437 811 245 96 71 chr3 22902234 22902764 -204621814 + MLT1H1 LTR MaLR 2 555 0 450 0 0 0 chr3 22903372 22903422 -204621156 + (CA)n Simple_repeat Simple_repeat 2 51 0 238 263 114 0 chr3 22904350 22904464 -204620114 - L1ME4a LINE L1 -21 6100 5974 328 211 133 37 chr3 22904470 22904670 -204619908 - MER5C DNA MER1_type -4 320 41 2169 125 7 0 chr3 22904702 22904999 -204619579 + AluSx SINE Alu 1 299 -13 2072 131 10 0 chr3 22905335 22905633 -204618945 + AluJo SINE Alu 1 301 -11 1755 133 16 0 chr3 22905639 22905887 -204618691 + AluSx SINE Alu 1 252 -60 315 0 0 0 chr3 22905907 22905942 -204618636 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 605 215 37 0 chr3 22906525 22906660 -204617918 - MIR SINE MIR -118 144 5 301 298 162 44 chr3 22907013 22907241 -204617337 + L2 LINE L2 3006 3260 -12 512 298 186 21 chr3 22908088 22908508 -204616070 + L2 LINE L2 2820 3308 -5 1812 166 7 3 chr3 22908514 22908809 -204615769 + AluSx SINE Alu 1 296 -16 1709 192 99 12 chr3 22909325 22909846 -204614732 - MER82 DNA MER2_type -9 644 23 2113 70 0 114 chr3 22909857 22910199 -204614379 + AluSg SINE Alu 1 303 -7 286 300 67 0 chr3 22910428 22910518 -204614060 + L2 LINE L2 3193 3288 -25 970 217 65 7 chr3 22910587 22910863 -204613715 + MER33 DNA MER1_type 28 319 -5 246 294 152 0 chr3 22911083 22911175 -204613403 + L2 LINE L2 3184 3289 -24 1515 156 0 43 chr3 22911227 22911484 -204613094 + AluJo SINE Alu 5 250 -62 435 196 0 62 chr3 22911660 22911772 -204612806 + MER3 DNA MER1_type 52 156 -53 1152 141 0 0 chr3 22911776 22911939 -204612639 + AluSg/x SINE Alu 133 295 -17 272 196 18 0 chr3 22911941 22911997 -204612581 + MER3 DNA MER1_type 153 209 0 243 191 0 0 chr3 22915060 22915123 -204609455 + CT-rich Low_complexity Low_complexity 1 63 0 631 225 0 0 chr3 22916306 22916426 -204608152 + FLAM_C SINE Alu 8 127 -16 485 171 166 68 chr3 22917105 22917222 -204607356 - MER2 DNA MER2_type 0 345 241 789 132 0 37 chr3 22917222 22917358 -204607220 + FLAM_C SINE Alu 1 131 -2 485 171 166 68 chr3 22917358 22917445 -204607133 - MER2 DNA MER2_type -104 241 121 1445 169 0 5 chr3 22917455 22917674 -204606904 + AluJb SINE Alu 11 228 -84 405 245 15 21 chr3 22917824 22918151 -204606427 + G-rich Low_complexity Low_complexity 1 325 0 357 247 53 12 chr3 22918078 22918248 -204606330 + (CGGGG)n Simple_repeat Simple_repeat 2 178 0 * 906 284 120 18 chr3 22918300 22918757 -204605821 - L2 LINE L2 -1056 2258 1755 189 107 0 0 chr3 22918949 22918977 -204605601 + (A)n Simple_repeat Simple_repeat 1 28 0 1871 149 0 0 chr3 22919452 22919727 -204604851 + AluJb SINE Alu 35 309 -3 198 244 24 0 chr3 22919735 22919776 -204604802 - MIR SINE MIR -220 42 1 2992 102 9 11 chr3 22919840 22919899 -204604679 + L1PA15 LINE L1 5721 5779 -386 2146 126 30 0 chr3 22919899 22920200 -204604378 + AluSx SINE Alu 3 312 0 2992 102 9 11 chr3 22920200 22920573 -204604005 + L1PA15 LINE L1 5779 6152 -13 237 189 75 0 chr3 22920580 22920633 -204603945 - MER41A LTR ERV1 -98 456 400 2178 163 73 29 chr3 22920719 22921129 -204603449 + MSTA LTR MaLR 1 428 0 9930 159 16 16 chr3 22921129 22921478 -204603100 + MSTA-int LTR MaLR 1 349 -1302 2416 97 0 3 chr3 22921478 22921789 -204602789 + AluSg SINE Alu 1 310 0 9930 159 16 16 chr3 22921789 22923091 -204601487 + MSTA-int LTR MaLR 349 1651 0 2200 137 77 50 chr3 22923091 22923468 -204601110 + MSTA LTR MaLR 1 391 -37 2390 109 0 0 chr3 22923468 22923770 -204600808 - AluSg SINE Alu -8 302 1 2200 137 77 50 chr3 22923770 22923809 -204600769 + MSTA LTR MaLR 391 428 0 316 286 160 11 chr3 22923809 22923984 -204600594 + MIR SINE MIR 61 261 -1 2363 109 0 0 chr3 22924161 22924464 -204600114 + AluSg SINE Alu 1 303 -7 764 179 0 57 chr3 22924468 22924608 -204599970 + AluJo SINE Alu 1 132 -170 2014 92 3 35 chr3 22924612 22924928 -204599650 + AluY SINE Alu 2 307 -4 1566 235 3 3 chr3 22925228 22925534 -204599044 - AluJo SINE Alu -6 306 1 314 177 38 0 chr3 22926688 22926767 -204597811 + (CCCCG)n Simple_repeat Simple_repeat 2 83 0 227 130 19 0 chr3 22926787 22926841 -204597737 + C-rich Low_complexity Low_complexity 3 57 0 30 0 0 0 chr3 22926925 22926955 -204597623 + GC_rich Low_complexity Low_complexity 1 30 0 1139 169 0 0 chr3 22927135 22927313 -204597265 + AluJo SINE Alu 120 297 -15 1566 235 3 3 chr3 22927389 22927695 -204596883 - AluJo SINE Alu -6 306 1 358 303 56 79 chr3 22928608 22928875 -204595703 + LTR16C LTR ERVL 231 491 0 255 152 0 0 chr3 22928913 22928959 -204595619 + T-rich Low_complexity Low_complexity 1 46 0 2453 86 3 3 chr3 22929763 22930065 -204594513 - AluSp SINE Alu -11 302 1 1586 150 18 71 chr3 22930189 22930529 -204594049 - L1MC1 LINE L1 0 6333 6012 1881 169 0 26 chr3 22930689 22931002 -204593576 + AluJo SINE Alu 1 305 -7 1904 149 21 0 chr3 22931194 22931482 -204593096 + AluSx SINE Alu 1 294 -18 1449 176 23 46 chr3 22931735 22932042 -204592536 - AluJb SINE Alu -12 300 1 1775 158 23 20 chr3 22932417 22932721 -204591857 - AluJo SINE Alu -7 305 1 275 244 53 38 chr3 22932721 22932791 -204591787 - L1M4 LINE L1 -2256 3890 3816 720 238 59 25 chr3 22932791 22932993 -204591585 - MER63A DNA MER1_type -1 209 1 275 244 53 38 chr3 22932993 22933053 -204591525 - L1M4 LINE L1 -2330 3816 3758 609 243 35 7 chr3 22933155 22933299 -204591279 + MER5B DNA MER1_type 31 178 0 619 189 141 5 chr3 22933307 22933468 -204591110 - MER5A DNA MER1_type 0 189 4 490 343 60 16 chr3 22933499 22933747 -204590831 - L1M4 LINE L1 -2581 3565 3307 1727 175 10 29 chr3 22933780 22934088 -204590490 + AluJb SINE Alu 2 303 -9 462 313 31 19 chr3 22934291 22934451 -204590127 - L2 LINE L2 0 3313 3152 2015 113 60 0 chr3 22934451 22934733 -204589845 + AluSq SINE Alu 1 299 -14 2193 118 3 0 chr3 22934736 22935055 -204589523 + AluSp SINE Alu 1 320 0 25 0 0 0 chr3 22935380 22935405 -204589173 + GC_rich Low_complexity Low_complexity 1 25 0 1694 147 40 0 chr3 22936161 22936434 -204588144 + AluSx SINE Alu 22 305 -7 2020 138 17 0 chr3 22936529 22936826 -204587752 - AluJo SINE Alu -10 302 1 1760 167 74 54 chr3 22936864 22937366 -204587212 + Charlie1b DNA MER1_type 1 512 -11 556 287 21 5 chr3 22937450 22937638 -204586940 - MER113 DNA MER1_type? -96 425 235 2161 124 0 0 chr3 22937818 22938109 -204586469 + AluY SINE Alu 1 291 -20 649 191 38 0 chr3 22938135 22938266 -204586312 - MER2 DNA MER2_type -209 136 1 252 237 79 0 chr3 22938284 22938360 -204586218 + L1ME4a LINE L1 5936 6017 -104 1153 161 0 0 chr3 22938515 22938689 -204585889 + AluSp SINE Alu 137 310 -3 683 261 33 14 chr3 22938708 22938923 -204585655 - L2 LINE L2 -337 2977 2759 771 275 45 28 chr3 22939027 22939274 -204585304 - L2 LINE L2 -1886 1428 1178 583 319 10 0 chr3 22939338 22939542 -204585036 + L2 LINE L2 966 1171 -2143 282 167 0 0 chr3 22939543 22939585 -204584993 - Alu SINE Alu -266 42 1 2128 100 45 3 chr3 22939612 22939903 -204584675 - AluSg SINE Alu -7 303 1 1783 137 10 40 chr3 22940167 22940466 -204584112 + AluJo SINE Alu 16 305 -7 1740 192 0 3 chr3 22940588 22940879 -204583699 + AluJo SINE Alu 1 290 -22 2174 112 7 7 chr3 22941960 22942275 -204582303 + AluSx SINE Alu 3 312 0 754 98 0 0 chr3 22942277 22942379 -204582199 + U6 snRNA snRNA 1 102 -5 241 358 35 66 chr3 22942425 22942682 -204581896 + L3 LINE CR1 179 427 -1150 503 300 31 19 chr3 22942854 22943014 -204581564 - L2 LINE L2 0 3313 3152 2003 117 60 0 chr3 22943014 22943296 -204581282 + AluSq SINE Alu 1 299 -14 2193 118 3 0 chr3 22943299 22943618 -204580960 + AluSp SINE Alu 1 320 0 410 265 178 29 chr3 22943710 22943936 -204580642 + L2 LINE L2 2826 3112 -201 1915 126 91 31 chr3 22943936 22944286 -204580292 + THE1C LTR MaLR 3 373 -2 410 265 178 29 chr3 22944286 22944368 -204580210 + L2 LINE L2 3112 3180 -133 855 144 0 43 chr3 22944369 22944508 -204580070 - FLAM_C SINE Alu 0 133 1 1756 287 39 43 chr3 22944540 22945240 -204579338 - L2 LINE L2 -542 2772 2076 766 302 115 12 chr3 22945820 22946221 -204578357 + MLT1J2 LTR MaLR 1 442 -8 483 316 96 36 chr3 22946290 22946540 -204578038 + L3 LINE CR1 436 700 -877 500 92 0 0 chr3 22946691 22946756 -204577822 + AluJ/FRAM SINE Alu 233 297 -15 210 266 102 31 chr3 22946765 22946893 -204577685 + L3 LINE CR1 785 921 -656 250 360 43 43 chr3 22947012 22947066 -204577512 + L3 LINE CR1 1301 1354 -223 447 52 0 0 chr3 22947066 22947124 -204577454 + (TG)n Simple_repeat Simple_repeat 2 59 0 1491 196 60 4 chr3 22947131 22947396 -204577182 - AluJo SINE Alu -30 282 3 250 360 43 43 chr3 22947396 22947497 -204577081 + L3 LINE CR1 1359 1464 -113 381 147 15 0 chr3 22947501 22947569 -204577009 + MER116 DNA Mariner 12 80 0 869 257 97 118 chr3 22947618 22948136 -204576442 - MLT1K LTR MaLR -25 563 57 309 291 68 17 chr3 22948205 22948322 -204576256 - L2 LINE L2 -308 3005 2883 813 248 116 19 chr3 22948322 22948641 -204575937 - MLT1G1 LTR MaLR 0 595 246 2413 79 7 0 chr3 22948663 22948966 -204575612 - AluY SINE Alu -5 306 2 982 283 102 35 chr3 22949135 22949189 -204575389 - L2 LINE L2 -449 2865 2816 1122 203 37 5 chr3 22949189 22949406 -204575172 + MER58A DNA MER1_type 1 224 0 982 283 102 35 chr3 22949406 22949725 -204574853 - L2 LINE L2 -498 2816 2467 1932 149 6 35 chr3 22949959 22950274 -204574304 - AluSx SINE Alu -6 306 1 1456 165 12 35 chr3 22950684 22950962 -204573616 - AluJb SINE Alu 0 309 38 1874 165 35 0 chr3 22951172 22951457 -204573121 + AluSx SINE Alu 1 295 -17 2150 103 3 10 chr3 22951502 22951804 -204572774 + AluY SINE Alu 1 300 -11 296 292 14 0 chr3 22952339 22952411 -204572167 - L2 LINE L2 0 3313 3241 190 359 26 0 chr3 22952511 22952589 -204571989 - L2 LINE L2 -220 3052 2973 405 284 168 0 chr3 22952665 22952820 -204571758 + MER5A DNA MER1_type 9 189 0 186 338 42 0 chr3 22952825 22952896 -204571682 - MIR3 SINE MIR -53 155 82 321 286 12 0 chr3 22953272 22953356 -204571222 + L1MEd LINE L1 586 670 -5449 2008 135 20 3 chr3 22953377 22953674 -204570904 + AluSx SINE Alu 1 302 -10 1752 156 25 0 chr3 22953907 22954189 -204570389 + AluSx SINE Alu 1 289 -23 1801 137 23 42 chr3 22954448 22954754 -204569824 - AluJb SINE Alu -12 300 1 2036 123 30 7 chr3 22954840 22955142 -204569436 - AluSx SINE Alu 0 312 4 1014 118 7 0 chr3 22955143 22955279 -204569299 - AluSq/x SINE Alu -175 137 1 24 0 0 0 chr3 22955282 22955306 -204569272 + AT_rich Low_complexity Low_complexity 1 24 0 1223 194 18 122 chr3 22955311 22955640 -204568938 + AluJb SINE Alu 1 295 -7 238 132 0 0 chr3 22955644 22955682 -204568896 + Charlie5 DNA MER1_type 2548 2585 -27 352 91 0 0 chr3 22955762 22955806 -204568772 - Alu SINE Alu -258 44 1 2211 118 7 0 chr3 22955807 22956104 -204568474 - AluSx SINE Alu -13 299 1 1025 206 47 12 chr3 22956155 22956412 -204568166 - L1ME1 LINE L1 -55 6111 5846 1809 169 0 29 chr3 22957680 22957994 -204566584 - AluJo SINE Alu -7 305 1 1556 153 18 71 chr3 22958154 22958494 -204566084 + L1MC1 LINE L1 6012 6333 0 2296 108 3 0 chr3 22958618 22958913 -204565665 + AluSx SINE Alu 1 296 -16 3524 141 34 9 chr3 22958918 22959496 -204565082 - LTR8A LTR ERV1 -50 677 60 44235 46 4 2 chr3 22959496 22965562 -204559016 + L1PA4 LINE L1 20 6094 -61 516 190 213 9 chr3 22965955 22966116 -204558462 - MER41B LTR ERV1 -295 340 97 307 315 45 9 chr3 22966717 22966828 -204557750 + MER91A DNA MER1_type 1 115 -81 232 271 71 0 chr3 22966881 22966951 -204557627 + MER91A DNA MER1_type 120 194 -2 1410 183 67 14 chr3 22967387 22967464 -204557114 + AluJo SINE Alu 1 72 -240 1989 120 51 0 chr3 22967464 22967756 -204556822 - AluSx SINE Alu -5 307 1 1410 183 67 14 chr3 22967756 22967963 -204556615 + AluJo SINE Alu 72 300 -12 2079 107 13 10 chr3 22967981 22968281 -204556297 + AluSx SINE Alu 1 301 -11 235 315 39 22 chr3 22968308 22968486 -204556092 - L1ME4a LINE L1 -168 5953 5773 929 89 0 22 chr3 22968544 22968679 -204555899 + FLAM_C SINE Alu 2 133 0 487 209 165 71 chr3 22968696 22968856 -204555722 - MER58A DNA MER1_type -2221 199 19 2633 202 26 24 chr3 22968856 22969396 -204555182 - MER87 LTR ERV1 0 541 1 487 209 165 71 chr3 22969396 22969417 -204555161 - MER58A DNA MER1_type -2401 19 1 398 276 25 31 chr3 22969418 22969581 -204554997 - L1ME4a LINE L1 -376 5745 5584 879 193 6 12 chr3 22969693 22969859 -204554719 - AluJo SINE Alu -1 301 137 1744 164 31 0 chr3 22970036 22970329 -204554249 + AluJb SINE Alu 1 302 -10 312 276 46 11 chr3 22970329 22970416 -204554162 + HAL1 LINE L1 18 107 -2400 1838 139 14 3 chr3 22970446 22970734 -204553844 + L1MA7 LINE L1 5815 6105 -186 538 175 10 0 chr3 22970885 22970988 -204553590 + LTR49 LTR ERV1 492 595 0 853 126 0 70 chr3 22971050 22971193 -204553385 - AluJo SINE Alu -169 133 1 723 96 70 45 chr3 22971194 22971350 -204553228 + L1MA7 LINE L1 6128 6287 -4 1572 225 160 43 chr3 22971364 22972083 -204552495 + HAL1 LINE L1 146 948 -1559 1718 152 8 0 chr3 22972108 22972365 -204552213 + AluJo SINE Alu 5 263 -49 574 179 0 52 chr3 22972385 22972519 -204552059 - MER106B DNA MER1_type -925 134 8 700 169 25 81 chr3 22972608 22972768 -204551810 + LTR23 LTR ERV1 1 151 -286 661 76 227 8 chr3 22972841 22972960 -204551618 + LTR23 LTR ERV1 161 305 -132 2259 120 0 0 chr3 22972961 22973270 -204551308 + AluSx SINE Alu 1 309 -3 433 151 0 23 chr3 22973281 22973367 -204551211 + FLAM_A SINE Alu 58 141 -1 799 136 7 43 chr3 22973368 22973508 -204551070 + LTR23 LTR ERV1 298 432 -5 2398 143 16 3 chr3 22973540 22973924 -204550654 - MER41B LTR ERV1 0 635 247 3753 162 63 38 chr3 22973925 22974435 -204550143 - MER50 LTR ERV1 -23 711 177 2103 124 7 20 chr3 22974435 22974741 -204549837 - AluSq SINE Alu -9 304 3 3753 162 63 38 chr3 22974741 22974923 -204549655 - MER50 LTR ERV1 -557 177 1 1732 95 50 0 chr3 22974923 22975161 -204549417 - MER41B LTR ERV1 -385 250 1 1151 213 44 24 chr3 22975161 22975457 -204549121 - LTR48B LTR ERV1 -1 643 342 1850 155 14 17 chr3 22975462 22975569 -204549009 - AluJo SINE Alu -16 296 190 4747 98 4 51 chr3 22975569 22975735 -204548843 - LTR8 LTR ERV1 0 691 519 2207 106 0 0 chr3 22975735 22976056 -204548522 - AluSq SINE Alu 0 321 1 4747 98 4 51 chr3 22976056 22976613 -204547965 - LTR8 LTR ERV1 -172 519 1 1850 155 14 17 chr3 22976613 22976802 -204547776 - AluJo SINE Alu -122 190 1 479 160 66 28 chr3 22976802 22976908 -204547670 - FLAM_C SINE Alu -1 142 33 633 234 42 24 chr3 22976908 22977075 -204547503 - LTR29 LTR ERV1 -316 306 137 2419 74 7 13 chr3 22977184 22977494 -204547084 - AluSp SINE Alu -5 308 1 641 149 26 26 chr3 22977496 22977610 -204546968 - FRAM SINE Alu -9 167 54 232 204 0 0 chr3 22977634 22977678 -204546900 + Alu SINE Alu 255 298 -3 2195 122 0 0 chr3 22977796 22978083 -204546495 + AluSx SINE Alu 5 291 -21 244 77 103 0 chr3 22978095 22978131 -204546447 + LTR8A LTR ERV1 1 40 -687 897 249 59 135 chr3 22978131 22978990 -204545588 - LTR1B LTR ERV1 0 826 33 290 226 0 0 chr3 22978996 22979049 -204545529 + LTR8A LTR ERV1 40 92 -635 44235 45 5 1 chr3 22979154 22985261 -204539317 - L1PA4 LINE L1 -4 6151 20 3670 150 25 27 chr3 22985261 22985844 -204538734 + LTR8A LTR ERV1 60 668 -59 2255 115 0 0 chr3 22985844 22986140 -204538438 - AluSx SINE Alu -16 296 1 3670 150 25 27 chr3 22986140 22986200 -204538378 + LTR8A LTR ERV1 668 727 0 1492 176 0 8 chr3 22986212 22986457 -204538121 + AluJb SINE Alu 1 243 -69 3974 105 26 51 chr3 22986457 22987103 -204537475 + MER41B LTR ERV1 6 635 0 335 206 0 15 chr3 22987103 22987171 -204537407 + AluJb SINE Alu 235 301 -1 333 0 0 0 chr3 22987191 22987228 -204537350 + (TG)n Simple_repeat Simple_repeat 2 38 0 269 305 33 26 chr3 22987283 22987434 -204537144 + HAL1 LINE L1 1274 1425 -1082 1032 191 72 139 chr3 22987440 22988146 -204536432 + LTR49 LTR ERV1 1 595 0 316 246 52 78 chr3 22988317 22988549 -204536029 - L1ME4a LINE L1 -3 6118 5893 1524 171 0 19 chr3 22988555 22988677 -204535901 - AluJb SINE Alu -59 253 130 2629 65 0 0 chr3 22988677 22988985 -204535593 - AluY SINE Alu -3 308 1 1524 171 0 19 chr3 22988985 22989120 -204535458 - AluJb SINE Alu -182 130 1 261 83 0 0 chr3 22989183 22989219 -204535359 + (A)n Simple_repeat Simple_repeat 1 36 0 3012 146 26 10 chr3 22989219 22989714 -204534864 + MER41B LTR ERV1 133 635 0 249 205 0 0 chr3 22989714 22989750 -204534828 - LTR8 LTR ERV1 -10 681 646 2098 212 70 60 chr3 22989779 22990098 -204534480 - LTR8 LTR ERV1 -15 676 362 2275 118 0 6 chr3 22990098 22990412 -204534166 + AluSx SINE Alu 1 312 0 2098 212 70 60 chr3 22990412 22990761 -204533817 - LTR8 LTR ERV1 -329 362 1 714 200 56 25 chr3 22990761 22990921 -204533657 - AluJo SINE Alu -146 166 2 3713 113 30 0 chr3 22991306 22991844 -204532734 - MER41A LTR ERV1 0 554 1 2084 125 0 26 chr3 22991986 22992297 -204532281 - AluSq SINE Alu -10 303 1 1070 148 6 28 chr3 22992311 22992487 -204532091 - FAM SINE Alu 0 175 4 240 294 34 34 chr3 22993439 22993558 -204531020 - MIR SINE MIR -48 214 96 244 293 0 13 chr3 22993639 22993714 -204530864 + (TATATG)n Simple_repeat Simple_repeat 6 79 0 25 51 0 0 chr3 22993749 22993788 -204530790 + AT_rich Low_complexity Low_complexity 1 39 0 396 0 0 0 chr3 22994233 22994277 -204530301 + (TA)n Simple_repeat Simple_repeat 1 44 0 351 0 0 0 chr3 22994276 22994315 -204530263 + (GA)n Simple_repeat Simple_repeat 2 40 0 * 1653 151 70 4 chr3 22994316 22994575 -204530003 - AluSx SINE Alu -35 277 2 1899 141 23 33 chr3 22994662 22994966 -204529612 - AluSx SINE Alu -11 301 1 787 211 88 44 chr3 22995780 22996007 -204528571 + L1ME3A LINE L1 5928 6164 -6 261 264 100 0 chr3 22996040 22996150 -204528428 - MIR SINE MIR -58 204 84 1120 164 4 58 chr3 22996209 22996435 -204528143 - AluJo SINE Alu -10 302 89 312 246 89 73 chr3 22997066 22997245 -204527333 + MIR3 SINE MIR 21 202 -6 634 166 58 37 chr3 22997828 22997969 -204526609 - MER44D DNA MER2_type -1883 604 467 1773 153 44 0 chr3 22997969 22998243 -204526335 - AluJb SINE Alu -13 299 14 634 166 58 37 chr3 22998243 22998342 -204526236 - MER44D DNA MER2_type -2020 467 1 976 134 18 43 chr3 22998357 22998521 -204526057 + AluJb SINE Alu 129 288 -24 2224 112 0 7 chr3 22998542 22998838 -204525740 - AluSx SINE Alu -16 296 3 21 0 0 0 chr3 22999170 22999191 -204525387 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 22999395 22999419 -204525159 + AT_rich Low_complexity Low_complexity 1 24 0 1899 155 7 7 chr3 22999419 22999710 -204524868 - AluSx SINE Alu -21 291 1 1428 165 12 35 chr3 23000120 23000398 -204524180 - AluJb SINE Alu 0 309 38 1843 165 35 0 chr3 23000608 23000893 -204523685 + AluSx SINE Alu 1 295 -17 1792 169 14 3 chr3 23000938 23001233 -204523345 + AluJb SINE Alu 1 298 -14 2287 101 10 0 chr3 23002000 23002298 -204522280 - AluSx SINE Alu -11 301 1 1308 170 9 5 chr3 23002362 23002580 -204521998 + AluJo SINE Alu 77 295 -17 210 37 0 0 chr3 23002685 23002712 -204521866 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 274 347 48 20 chr3 23002828 23002975 -204521603 - MIR SINE MIR -30 232 82 754 174 16 0 chr3 23002980 23003101 -204521477 - FLAM_C SINE Alu -19 124 2 1616 181 0 23 chr3 23003896 23004200 -204520378 - AluJo SINE Alu -15 297 1 605 269 21 27 chr3 23004208 23004394 -204520184 + MER90 LTR ERV1 384 568 -7 336 223 70 56 chr3 23004453 23004668 -204519910 + L1MC4a LINE L1 4489 4706 -1440 729 217 56 7 chr3 23004675 23004818 -204519760 + FRAM SINE Alu 5 154 -12 2037 104 14 0 chr3 23004820 23005133 -204519445 + AluSg SINE Alu 1 317 0 391 333 82 0 chr3 23005141 23005276 -204519302 + L1MC4a LINE L1 4696 4841 -1305 1386 255 63 36 chr3 23005449 23006309 -204518269 + L1MCb LINE L1 597 1478 -4851 858 121 32 0 chr3 23006396 23006520 -204518058 + FLAM_C SINE Alu 2 129 -4 961 164 49 53 chr3 23006616 23006842 -204517736 + AluJo SINE Alu 87 311 -1 343 228 202 0 chr3 23006865 23006979 -204517599 + L1MC4a LINE L1 5209 5345 -801 489 252 17 9 chr3 23006987 23007102 -204517476 + L2 LINE L2 3197 3312 -1 698 301 68 47 chr3 23007140 23007502 -204517076 + L1MC4a LINE L1 5391 5767 -2041 2351 77 3 0 chr3 23007502 23007801 -204516777 - AluY SINE Alu -6 305 6 698 301 68 47 chr3 23007801 23007923 -204516655 + L1MC4a LINE L1 5767 5885 -1923 2329 191 37 23 chr3 23007953 23008605 -204515973 - MER109 Unknown Unknown -1108 1324 1 438 292 68 37 chr3 23008612 23008911 -204515667 - MER109 Unknown Unknown -1629 803 2 956 154 56 70 chr3 23009115 23009280 -204515298 - AluJo SINE Alu -18 294 131 2188 90 20 7 chr3 23009280 23009580 -204514998 + AluSq SINE Alu 1 304 -9 956 154 56 70 chr3 23009580 23009628 -204514950 - AluJo SINE Alu -181 131 84 379 172 0 0 chr3 23009656 23009714 -204514864 + AluJ/FLAM SINE Alu 1 58 -244 1701 152 4 4 chr3 23009715 23009991 -204514587 + AluJb SINE Alu 26 301 -11 1577 163 18 7 chr3 23009993 23010270 -204514308 + AluJo SINE Alu 1 280 -32 33 56 0 0 chr3 23010270 23010324 -204514254 + AT_rich Low_complexity Low_complexity 1 54 0 719 227 146 24 chr3 23010328 23010575 -204514003 + L1MC4 LINE L1 7216 7492 -550 2213 101 10 0 chr3 23010760 23011066 -204513512 + AluSx SINE Alu 1 309 -3 758 137 17 0 chr3 23011121 23011238 -204513340 + AluJo SINE Alu 24 142 -170 1634 144 54 7 chr3 23011249 23011355 -204513223 + AluJb SINE Alu 13 113 -199 186 43 0 0 chr3 23011355 23011378 -204513200 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1634 144 54 7 chr3 23011378 23011549 -204513029 + AluJb SINE Alu 113 303 -9 1356 180 114 0 chr3 23011571 23011843 -204512735 + AluJb SINE Alu 1 303 -9 1608 185 7 0 chr3 23011917 23012214 -204512364 - AluJb SINE Alu -13 299 1 554 280 105 29 chr3 23012930 23013169 -204511409 + MIR SINE MIR 6 262 0 33 43 0 0 chr3 23013199 23013246 -204511332 + AT_rich Low_complexity Low_complexity 1 47 0 309 212 93 85 chr3 23013246 23013364 -204511214 - FLAM_A SINE Alu -14 119 1 2247 87 0 0 chr3 23013593 23013882 -204510696 - AluSc SINE Alu -16 293 5 196 313 54 54 chr3 23014342 23014454 -204510124 - L2 LINE L2 -8 3305 3194 812 142 8 15 chr3 23016866 23017000 -204507578 + FLAM_C SINE Alu 1 133 0 588 184 13 53 chr3 23017263 23017415 -204507163 + L1MC5 LINE L1 7768 7913 -48 1642 165 0 4 chr3 23017845 23018124 -204506454 + AluJb SINE Alu 22 299 -13 474 211 22 60 chr3 23018609 23018733 -204505845 + MIR3 SINE MIR 67 193 -15 379 342 9 0 chr3 23018799 23018913 -204505665 - L2 LINE L2 -8 3305 3191 366 291 79 40 chr3 23019069 23019296 -204505282 - L2 LINE L2 -372 2942 2707 456 91 0 65 chr3 23020439 23020516 -204504062 - AluJ/FRAM SINE Alu -17 295 224 315 291 94 0 chr3 23020630 23020747 -204503831 - MIR SINE MIR 0 262 135 824 93 0 0 chr3 23020757 23020864 -204503714 - U6 snRNA snRNA 0 107 1 207 0 0 0 chr3 23020881 23020904 -204503674 + (A)n Simple_repeat Simple_repeat 1 23 0 377 235 0 0 chr3 23021394 23021462 -204503116 + Tigger3(Golem) DNA MER2_type 13 80 -2949 462 238 48 0 chr3 23021576 23021681 -204502897 + Tigger3(Golem) DNA MER2_type 2919 3028 -1 268 278 144 0 chr3 23021746 23021843 -204502735 + L2 LINE L2 3158 3268 -4 654 226 53 0 chr3 23022586 23022719 -204501859 + FAM SINE Alu 1 140 -45 390 324 139 17 chr3 23023444 23023617 -204500961 - MIR3 SINE MIR -11 197 4 2052 125 0 0 chr3 23024552 23024840 -204499738 - AluSx SINE Alu -21 291 4 1186 202 18 119 chr3 23024896 23025232 -204499346 - AluJo SINE Alu 0 302 1 1020 142 0 45 chr3 23025461 23025637 -204498941 - MER20 DNA MER1_type -7 212 45 231 87 152 22 chr3 23025665 23025711 -204498867 - Charlie1 DNA MER1_type -363 2398 2347 272 188 29 72 chr3 23025712 23025781 -204498797 - Charlie1 DNA MER1_type -2689 72 7 2035 136 7 0 chr3 23026162 23026470 -204498108 - AluSx SINE Alu 0 312 3 188 329 47 0 chr3 23027349 23027434 -204497144 - MIR3 SINE MIR -5 203 115 198 0 0 0 chr3 23029137 23029159 -204495419 + (T)n Simple_repeat Simple_repeat 1 22 0 957 123 0 0 chr3 23029202 23029332 -204495246 + FLAM_C SINE Alu 1 130 -3 258 32 0 0 chr3 23029856 23029887 -204494691 + (TG)n Simple_repeat Simple_repeat 1 31 0 1102 218 182 40 chr3 23030970 23031447 -204493131 - MLT1H LTR MaLR -4 545 1 193 244 0 0 chr3 23031482 23031523 -204493055 + MIR3 SINE MIR 151 191 -17 748 231 114 9 chr3 23031690 23031936 -204492642 - MLT1H1 LTR MaLR 0 590 290 631 130 47 101 chr3 23032556 23032689 -204491889 + LTR65 LTR ERV1 2 126 -543 1965 121 17 7 chr3 23032689 23032986 -204491592 - AluSx SINE Alu -12 300 1 631 130 47 101 chr3 23032986 23033021 -204491557 + LTR65 LTR ERV1 126 161 -508 266 282 0 0 chr3 23033001 23033072 -204491506 + MER90 LTR ERV1 285 355 -259 * 2128 112 7 3 chr3 23033178 23033482 -204491096 - AluSx SINE Alu -7 305 1 528 247 44 25 chr3 23033505 23033663 -204490915 - MIR SINE MIR -82 180 20 666 193 0 0 chr3 23033745 23033864 -204490714 + AluJo SINE Alu 18 136 -176 2150 104 10 13 chr3 23033880 23034013 -204490565 + AluSx SINE Alu 1 133 -179 2438 69 0 0 chr3 23034013 23034317 -204490261 + AluY SINE Alu 1 304 -7 2150 104 10 13 chr3 23034317 23034491 -204490087 + AluSx SINE Alu 133 307 -5 285 290 46 38 chr3 23034915 23035046 -204489532 + MLT1K LTR MaLR 138 269 -319 1712 192 0 0 chr3 23035070 23035382 -204489196 - AluJb SINE Alu 0 312 1 252 194 28 56 chr3 23035551 23035623 -204488955 + MLT1K LTR MaLR 448 517 -71 190 253 147 27 chr3 23035827 23035902 -204488676 - MIR3 SINE MIR -19 189 106 392 212 61 0 chr3 23036282 23036381 -204488197 - Zaphod DNA AcHobo -1 4030 3926 708 149 0 101 chr3 23036381 23036529 -204488049 - FLAM_A SINE Alu 0 142 10 2049 117 91 57 chr3 23036529 23036881 -204487697 + THE1B LTR MaLR 1 364 0 445 176 14 0 chr3 23036881 23036955 -204487623 - FLAM_A SINE Alu -54 78 4 1846 274 68 16 chr3 23036957 23037515 -204487063 - MER115 DNA AcHobo -105 588 2 243 219 62 0 chr3 23037591 23037655 -204486923 + MIR3 SINE MIR 87 154 -54 626 194 77 47 chr3 23039635 23039717 -204484861 + MER3 DNA MER1_type 35 113 -96 2092 117 0 0 chr3 23039717 23040015 -204484563 - AluSx SINE Alu -14 298 1 626 194 77 47 chr3 23040015 23040102 -204484476 + MER3 DNA MER1_type 113 209 0 234 247 93 52 chr3 23041318 23041415 -204483163 + L2 LINE L2 3171 3271 -1 188 135 27 0 chr3 23041427 23041464 -204483114 + GA-rich Low_complexity Low_complexity 2 39 0 183 310 0 35 chr3 23041844 23041902 -204482676 + MIR SINE MIR 129 184 -78 1957 131 0 32 chr3 23042300 23042614 -204481964 - AluJo SINE Alu -8 304 1 261 240 194 16 chr3 23042739 23042868 -204481710 - MIR SINE MIR -18 244 93 194 33 67 0 chr3 23043002 23043032 -204481546 + A-rich Low_complexity Low_complexity 2 33 0 2198 107 0 3 chr3 23044462 23044772 -204479806 - AluSx SINE Alu -3 309 1 549 231 16 86 chr3 23045020 23045206 -204479372 + L1MC5 LINE L1 7753 7925 -36 2031 109 0 20 chr3 23045272 23045565 -204479013 - AluSg SINE Alu -23 287 1 502 239 80 88 chr3 23046175 23046448 -204478130 + MLT1L LTR MaLR 233 610 -5 2229 101 0 0 chr3 23046495 23046792 -204477786 - AluSx SINE Alu -15 297 1 296 289 0 60 chr3 23046985 23047068 -204477510 + MER5B DNA MER1_type 44 121 -57 31 0 0 0 chr3 23047075 23047106 -204477472 + AT_rich Low_complexity Low_complexity 1 31 0 2120 123 0 0 chr3 23047127 23047427 -204477151 - AluSx SINE Alu -12 300 1 198 0 0 0 chr3 23047440 23047462 -204477116 + (TTA)n Simple_repeat Simple_repeat 3 24 0 565 30 0 0 chr3 23047462 23047528 -204477050 - L1PA3 LINE L1 -18 6137 6072 315 146 18 0 chr3 23047528 23047583 -204476995 + MER5B DNA MER1_type 118 173 -5 * 334 306 149 53 chr3 23047565 23047921 -204476657 + L2 LINE L2 2924 3313 0 225 221 91 39 chr3 23049326 23049403 -204475175 + MIR3 SINE MIR 79 159 -49 2178 84 0 3 chr3 23049647 23049978 -204474600 - AluSx SINE Alu 0 330 1 183 308 70 89 chr3 23050293 23050507 -204474071 - L2 LINE L2 -2849 465 256 2418 74 0 0 chr3 23050982 23051293 -204473285 - AluY SINE Alu 0 311 1 2093 109 0 3 chr3 23052541 23052843 -204471735 + AluSg SINE Alu 1 301 -9 555 238 45 21 chr3 23052954 23053112 -204471466 + MIR SINE MIR 36 196 -58 490 268 18 37 chr3 23053231 23053395 -204471183 + MLT1H LTR MaLR 389 549 0 2016 138 3 0 chr3 23053627 23053924 -204470654 - AluSp SINE Alu -15 298 1 1152 137 53 0 chr3 23053925 23054115 -204470463 - MSTB1 LTR MaLR -232 200 1 967 147 32 0 chr3 23054256 23054413 -204470165 + AluJb SINE Alu 131 292 -20 692 191 38 0 chr3 23054439 23054570 -204470008 - MER2 DNA MER2_type -209 136 1 263 237 79 0 chr3 23054588 23054664 -204469914 + L1ME4a LINE L1 5936 6017 -104 1076 150 0 0 chr3 23054819 23054986 -204469592 + AluSp SINE Alu 137 303 -10 673 263 31 13 chr3 23054986 23055227 -204469351 - L2 LINE L2 -311 3002 2759 756 275 45 28 chr3 23055331 23055578 -204469000 - L2 LINE L2 -1886 1428 1178 577 319 10 0 chr3 23055642 23055846 -204468732 + L2 LINE L2 966 1171 -2143 302 167 0 0 chr3 23055847 23055889 -204468689 - Alu SINE Alu -266 42 1 2019 100 45 0 chr3 23055916 23056206 -204468372 - AluSg SINE Alu -7 303 1 1641 137 10 40 chr3 23056470 23056769 -204467809 + AluJo SINE Alu 16 305 -7 1595 192 0 3 chr3 23056891 23057182 -204467396 + AluJo SINE Alu 1 290 -22 2035 109 7 0 chr3 23058276 23058559 -204466019 + AluSx SINE Alu 3 287 -25 2156 101 10 0 chr3 23059337 23059635 -204464943 - AluSx SINE Alu -11 301 1 1224 170 9 5 chr3 23059699 23059917 -204464661 + AluJo SINE Alu 77 295 -17 243 219 62 0 chr3 23061369 23061433 -204463145 - MIR3 SINE MIR -54 154 87 1846 274 68 16 chr3 23061509 23062067 -204462511 + MER115 DNA AcHobo 2 588 -105 445 176 14 0 chr3 23062069 23062143 -204462435 + FLAM_A SINE Alu 4 78 -54 2049 117 91 57 chr3 23062143 23062495 -204462083 - THE1B LTR MaLR 0 364 1 714 150 0 95 chr3 23062495 23062642 -204461936 + FLAM_A SINE Alu 10 142 0 392 212 61 0 chr3 23062642 23062741 -204461837 + Zaphod DNA AcHobo 3926 4030 -1 190 253 147 27 chr3 23063121 23063196 -204461382 + MIR3 SINE MIR 106 189 -19 252 194 28 56 chr3 23063400 23063472 -204461106 - MLT1K LTR MaLR -71 517 448 1907 163 0 0 chr3 23063641 23063948 -204460630 + AluJb SINE Alu 1 307 -5 321 310 44 32 chr3 23063950 23064108 -204460470 - MLT1K LTR MaLR -291 297 138 2307 57 0 0 chr3 23064557 23064838 -204459740 - AluY SINE Alu -30 281 1 24 0 0 0 chr3 23064841 23064865 -204459713 + AT_rich Low_complexity Low_complexity 1 24 0 1607 119 78 44 chr3 23064883 23065178 -204459400 - AluSx SINE Alu -7 305 1 191 200 154 31 chr3 23065946 23066011 -204458567 - MIR3 SINE MIR -25 183 111 355 297 120 37 chr3 23066026 23066458 -204458120 + L2 LINE L2 2745 3252 -61 267 227 31 103 chr3 23066537 23066634 -204457944 + MIR SINE MIR 86 175 -87 2037 119 6 10 chr3 23067593 23067905 -204456673 - AluSx SINE Alu -1 311 1 469 318 7 14 chr3 23068027 23068175 -204456403 + MIR3 SINE MIR 49 195 -13 359 271 16 74 chr3 23068891 23069013 -204455565 + MER5B DNA MER1_type 4 118 -60 219 234 0 91 chr3 23069064 23069141 -204455437 + MER5A DNA MER1_type 118 187 -2 305 156 16 0 chr3 23072027 23072091 -204452487 + MER113 DNA MER1_type? 33 97 -424 1142 178 18 9 chr3 23072118 23072343 -204452235 - AluJb SINE Alu 0 312 86 1695 149 3 20 chr3 23072428 23072729 -204451849 - AluJb SINE Alu -16 296 1 207 114 0 0 chr3 23072997 23073032 -204451546 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 297 239 30 0 chr3 23073623 23073690 -204450888 - MIR3 SINE MIR -50 158 90 1539 186 68 6 chr3 23075223 23075588 -204448990 - Charlie5 DNA MER1_type 0 2624 2237 548 184 9 9 chr3 23075592 23075701 -204448877 - Charlie5 DNA MER1_type -2503 109 1 406 211 147 51 chr3 23077011 23077167 -204447411 + LTR16A1 LTR ERVL 242 412 -45 267 256 12 137 chr3 23077321 23077489 -204447089 - MER117 DNA MER1_type 0 197 51 33137 58 61 9 chr3 23079453 23084706 -204439872 - L1PA5 LINE L1 0 6154 617 596 148 0 0 chr3 23084706 23084794 -204439784 - L1PA5 LINE L1 -6058 88 1 431 237 0 0 chr3 23084849 23084946 -204439632 + MER5B DNA MER1_type 3 99 -79 1369 196 7 21 chr3 23084947 23085228 -204439350 + AluJb SINE Alu 1 277 -35 213 39 0 0 chr3 23085234 23085260 -204439318 + (TAA)n Simple_repeat Simple_repeat 2 27 0 357 241 0 12 chr3 23085265 23085348 -204439230 + MER5B DNA MER1_type 94 175 -3 399 217 118 94 chr3 23085490 23085669 -204438909 - MER5A DNA MER1_type 0 189 6 302 343 28 19 chr3 23085999 23086107 -204438471 - L2 LINE L2 -1 3312 3204 657 205 0 16 chr3 23086108 23086235 -204438343 - MER58B DNA MER1_type 0 341 217 731 292 79 39 chr3 23086294 23086788 -204437790 - L2 LINE L2 -92 3221 2714 333 281 52 0 chr3 23087213 23087309 -204437269 - MIR SINE MIR -70 192 92 1562 137 3 83 chr3 23087858 23088209 -204436369 - MER33 DNA MER1_type -1 323 1 1270 221 117 28 chr3 23089562 23089955 -204434623 - L1ME3A LINE L1 -12 6158 5731 1040 218 4 9 chr3 23089948 23090177 -204434401 + L1ME LINE L1 5441 5668 -502 * 326 275 0 0 chr3 23090470 23090550 -204434028 + L1ME LINE L1 5652 5731 -439 1834 263 87 27 chr3 23090878 23091049 -204433529 - MER20B DNA MER1_type -8 775 616 2298 98 0 0 chr3 23091049 23091346 -204433232 + AluSc SINE Alu 1 297 -12 1834 263 87 27 chr3 23091346 23091656 -204432922 - MER20B DNA MER1_type -167 616 326 2394 57 0 3 chr3 23091656 23091952 -204432626 + AluY SINE Alu 1 295 -16 1834 263 87 27 chr3 23091952 23092168 -204432410 - MER20B DNA MER1_type -457 326 35 1779 117 4 0 chr3 23093073 23093322 -204431256 + AluSx SINE Alu 1 250 -62 200 344 41 16 chr3 23093378 23093500 -204431078 - L2 LINE L2 -475 2839 2715 189 130 111 37 chr3 23093757 23093811 -204430767 - L2 LINE L2 -18 3295 3238 548 302 88 60 chr3 23093861 23094146 -204430432 + L2 LINE L2 2978 3270 -2 940 207 70 44 chr3 23094154 23094381 -204430197 - MIR SINE MIR -28 234 2 2324 215 61 20 chr3 23094443 23094987 -204429591 - MER90 LTR ERV1 -2 573 8 318 333 0 0 chr3 23096202 23096304 -204428274 + MIR3 SINE MIR 76 177 -31 2208 111 0 0 chr3 23096308 23096615 -204427963 - AluSx SINE Alu -5 307 1 240 111 0 0 chr3 23097741 23097777 -204426801 + (CA)n Simple_repeat Simple_repeat 1 36 0 1050 204 37 0 chr3 23098666 23098882 -204425696 - MER58A DNA MER1_type 0 224 1 632 274 98 5 chr3 23099030 23099234 -204425344 + MIR SINE MIR 20 242 -20 262 233 44 56 chr3 23099365 23099455 -204425123 - L2 LINE L2 -212 3060 2972 249 227 30 30 chr3 23099794 23099860 -204424718 + MIR3 SINE MIR 124 189 -19 231 158 61 0 chr3 23099944 23100026 -204424552 + (TCTCTG)n Simple_repeat Simple_repeat 4 90 0 621 268 60 6 chr3 23100096 23100279 -204424299 + MIR3 SINE MIR 16 208 0 2085 174 104 9 chr3 23100854 23101278 -204423300 + MER31B LTR ERV1 1 464 -2 2244 102 0 3 chr3 23101385 23101688 -204422890 - AluSq SINE Alu -11 302 1 1680 170 7 0 chr3 23101697 23101985 -204422593 - AluSx SINE Alu -22 290 1 253 135 0 0 chr3 23102006 23102043 -204422535 + MER117 DNA MER1_type 54 90 -107 406 282 165 20 chr3 23102164 23102326 -204422252 - MIR SINE MIR -48 214 30 513 296 77 0 chr3 23102686 23102855 -204421723 + MLT1J2 LTR MaLR 262 443 -7 550 245 82 31 chr3 23102901 23103060 -204421518 - MIR SINE MIR -65 197 31 362 280 36 52 chr3 23103391 23103508 -204421070 + L1MC4 LINE L1 7853 7967 -75 1958 155 9 79 chr3 23103508 23103848 -204420730 - MLT1B LTR MaLR 0 390 83 2114 111 0 16 chr3 23103848 23104164 -204420414 + AluSx SINE Alu 1 311 -1 1958 155 9 79 chr3 23104164 23104242 -204420336 - MLT1B LTR MaLR -307 83 1 362 280 36 52 chr3 23104242 23104317 -204420261 + L1MC4 LINE L1 7967 8042 0 197 300 30 50 chr3 23105383 23105483 -204419095 + MIR3 SINE MIR 105 202 -6 371 246 40 137 chr3 23105679 23105884 -204418694 - L1MC4a LINE L1 -1753 6055 5876 1550 188 55 0 chr3 23105884 23106177 -204418401 - 7SLRNA srpRNA srpRNA -11 309 1 371 246 40 137 chr3 23106177 23106219 -204418359 - L1MC4a LINE L1 -1932 5876 5832 839 168 0 0 chr3 23106230 23106367 -204418211 - FLAM_C SINE Alu -1 142 6 1502 269 32 13 chr3 23106375 23106750 -204417828 - L1MC4a LINE L1 -1988 5820 5433 1741 152 4 4 chr3 23106750 23107026 -204417552 - AluJb SINE Alu -36 276 1 1502 269 32 13 chr3 23107026 23107111 -204417467 - L1MC4a LINE L1 -2375 5433 5351 318 254 190 14 chr3 23107115 23107257 -204417321 - L1MC4a LINE L1 -824 5322 5156 342 0 0 0 chr3 23107263 23107300 -204417278 + tRNA-Gly-GGG tRNA tRNA 1 37 -37 311 290 30 10 chr3 23107369 23107469 -204417109 - L1MC4a LINE L1 -1069 5077 4976 188 260 271 10 chr3 23107631 23107727 -204416851 - MIR3 SINE MIR -73 135 15 495 223 23 39 chr3 23107916 23108046 -204416532 - L1MC/D LINE L1 -2239 5569 5442 43 47 0 0 chr3 23108066 23108130 -204416448 + AT_rich Low_complexity Low_complexity 1 64 0 890 143 0 0 chr3 23108140 23108273 -204416305 + FLAM_C SINE Alu 1 133 -10 285 283 202 25 chr3 23108878 23109076 -204415502 - MIR SINE MIR -9 253 21 2400 44 0 14 chr3 23109162 23109459 -204415119 + AluY SINE Alu 1 293 -18 534 276 55 0 chr3 23109548 23109693 -204414885 - MIR SINE MIR -6 256 104 1559 150 15 11 chr3 23109698 23109971 -204414607 + AluJb SINE Alu 1 274 -38 522 188 0 19 chr3 23109973 23110127 -204414451 + G-rich Low_complexity Low_complexity 3 153 0 256 33 0 0 chr3 23110127 23110157 -204414421 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 387 282 43 17 chr3 23110362 23110479 -204414099 - MIR3 SINE MIR -4 204 85 784 289 47 16 chr3 23111975 23112228 -204412350 - MIR SINE MIR 0 262 2 340 273 152 15 chr3 23112285 23112417 -204412161 + MIR SINE MIR 99 248 -14 1075 179 50 10 chr3 23112784 23112985 -204411593 + LTR16C LTR ERVL 283 491 0 2075 183 87 28 chr3 23113072 23113531 -204411047 + MLT1D LTR MaLR 18 503 -2 497 264 196 0 chr3 23113555 23113703 -204410875 + MER5A DNA MER1_type 1 177 -12 182 215 38 139 chr3 23113584 23113703 -204410875 - L3 LINE CR1 -614 963 862 * 489 257 46 29 chr3 23113703 23113878 -204410700 - MER5B DNA MER1_type 0 178 1 182 215 38 139 chr3 23113878 23113916 -204410662 - L3 LINE CR1 -715 862 822 21 0 0 0 chr3 23114164 23114185 -204410393 + AT_rich Low_complexity Low_complexity 1 21 0 370 141 202 50 chr3 23114417 23114516 -204410062 + L2 LINE L2 3200 3313 0 * 387 351 27 0 chr3 23114500 23114648 -204409930 - MIR SINE MIR -64 198 47 2163 107 7 0 chr3 23114799 23115107 -204409471 + AluSg SINE Alu 1 310 0 1672 123 105 4 chr3 23116138 23116415 -204408163 + AluSx SINE Alu 1 305 -7 24 0 0 0 chr3 23116433 23116457 -204408121 + AT_rich Low_complexity Low_complexity 1 24 0 2318 57 0 0 chr3 23116460 23116801 -204407777 + AluY SINE Alu 1 341 0 652 111 0 10 chr3 23116961 23117060 -204407518 + AluSg/x SINE Alu 203 300 -9 555 238 45 21 chr3 23117171 23117329 -204407249 + MIR SINE MIR 36 196 -58 490 268 18 37 chr3 23117448 23117612 -204406966 + MLT1H LTR MaLR 389 549 0 2173 97 3 3 chr3 23117844 23118142 -204406436 - AluSp SINE Alu -15 298 1 244 330 42 34 chr3 23118673 23118791 -204405787 + L2 LINE L2 3153 3271 -1 645 266 55 18 chr3 23119154 23119593 -204404985 + LTR33 LTR ERVL 19 521 0 571 188 43 0 chr3 23119778 23119895 -204404683 - L2 LINE L2 0 3313 3192 232 246 18 0 chr3 23119967 23120024 -204404554 + Charlie4 DNA MER1_type 1900 1957 -4 420 104 0 0 chr3 23121606 23121673 -204402905 + (TG)n Simple_repeat Simple_repeat 2 68 0 245 172 35 0 chr3 23121676 23121734 -204402844 + CT-rich Low_complexity Low_complexity 1 60 0 412 251 182 37 chr3 23122604 23122791 -204401787 + MIR SINE MIR 31 244 -18 1050 227 126 66 chr3 23122810 23123326 -204401252 + MLT1H LTR MaLR 3 549 0 423 285 231 8 chr3 23124468 23124724 -204399854 + L1MC4a LINE L1 5522 5834 -1974 * 1445 209 22 43 chr3 23124704 23125150 -204399428 + L1ME1 LINE L1 4889 5325 -821 1857 146 0 10 chr3 23125161 23125462 -204399116 + AluSx SINE Alu 13 310 -2 850 173 23 100 chr3 23125468 23125688 -204398890 + AluJb SINE Alu 86 288 -24 240 111 0 0 chr3 23125689 23125725 -204398853 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 4184 181 55 0 chr3 23125725 23126521 -204398057 + L1ME1 LINE L1 5322 6161 -5 477 207 89 15 chr3 23127444 23127579 -204396999 - MER103 DNA DNA -20 146 2 269 217 0 117 chr3 23127676 23127796 -204396782 - MIR SINE MIR -51 211 106 30 27 0 0 chr3 23128398 23128435 -204396143 + AT_rich Low_complexity Low_complexity 1 37 0 1696 156 7 13 chr3 23129367 23129689 -204394889 - AluSx SINE Alu 0 312 1 1147 256 158 10 chr3 23129693 23130359 -204394219 - L2 LINE L2 0 3313 2524 334 266 39 23 chr3 23130361 23130489 -204394089 + MLT1G1 LTR MaLR 1 130 -465 298 270 226 7 chr3 23131003 23131140 -204393438 - MIR SINE MIR -89 173 7 201 287 133 40 chr3 23131494 23131644 -204392934 + L2 LINE L2 2949 3112 -160 210 172 62 78 chr3 23131678 23131742 -204392836 + MIR SINE MIR 20 82 -180 1951 147 0 0 chr3 23132402 23132702 -204391876 + AluSx SINE Alu 5 304 -8 2075 154 31 8 chr3 23132835 23133191 -204391387 - MLT1A1 LTR MaLR 0 365 2 211 263 153 29 chr3 23133196 23133333 -204391245 + L2 LINE L2 3160 3313 0 2105 103 38 0 chr3 23133405 23133697 -204390881 + AluSx SINE Alu 1 303 -9 1972 173 5 67 chr3 23134133 23134437 -204390141 - MLT1B LTR MaLR 0 390 117 2295 85 0 10 chr3 23134437 23134743 -204389835 - AluSg SINE Alu -7 303 1 1972 173 5 67 chr3 23134743 23134854 -204389724 - MLT1B LTR MaLR -273 117 1 417 288 159 12 chr3 23134883 23135046 -204389532 + MIR SINE MIR 21 207 -55 583 184 12 9 chr3 23135882 23136120 -204388458 - MLT1F1 LTR MaLR -170 397 2 597 245 117 12 chr3 23136489 23136652 -204387926 - MER5A DNA MER1_type -9 180 1 1764 164 11 0 chr3 23137517 23137798 -204386780 + AluSx SINE Alu 1 284 -28 781 123 8 16 chr3 23137824 23137946 -204386632 + L1MC1 LINE L1 6212 6332 -1 480 244 10 57 chr3 23139345 23139511 -204385067 + MLT1F LTR MaLR 1 169 -240 962 200 6 0 chr3 23139587 23139767 -204384811 - LTR65 LTR ERV1 0 669 489 1946 145 0 0 chr3 23139938 23140242 -204384336 + AluJb SINE Alu 8 311 -1 268 114 57 136 chr3 23140435 23140523 -204384055 - L1MB7 LINE L1 -2 6176 6096 1726 179 132 26 chr3 23140536 23140900 -204383678 - LTR65 LTR ERV1 -205 464 49 2436 134 58 17 chr3 23140900 23141311 -204383267 - MSTA LTR MaLR 0 428 1 1726 179 132 26 chr3 23141311 23141364 -204383214 - LTR65 LTR ERV1 -620 49 3 294 286 142 7 chr3 23141427 23141600 -204382978 + MLT1H LTR MaLR 338 530 -19 830 172 30 30 chr3 23141758 23141927 -204382651 + L1ME3 LINE L1 5949 6117 -45 1190 126 6 0 chr3 23142292 23142466 -204382112 - MER5B DNA MER1_type 0 178 4 189 333 15 0 chr3 23142475 23142541 -204382037 - MIR3 SINE MIR -54 154 88 307 272 140 15 chr3 23142995 23143131 -204381447 - MIR SINE MIR -33 229 77 878 298 140 20 chr3 23143322 23143728 -204380850 + LTR16B LTR ERVL 8 462 -2 22609 122 50 25 chr3 23143836 23144527 -204380051 - L1MA3 LINE L1 0 7724 7052 1721 162 6 22 chr3 23144527 23144842 -204379736 - AluJb SINE Alu -2 310 1 22609 122 50 25 chr3 23144842 23145681 -204378897 - L1MA3 LINE L1 -672 7052 6236 2160 114 0 10 chr3 23145681 23145989 -204378589 - AluSx SINE Alu -7 305 1 22609 122 50 25 chr3 23145989 23147282 -204377296 - L1MA3 LINE L1 -1488 6236 4977 1237 177 117 8 chr3 23147282 23147547 -204377031 - AluJb SINE Alu -18 294 1 22609 122 50 25 chr3 23147547 23148185 -204376393 - L1MA3 LINE L1 -2747 4977 4357 2074 103 0 3 chr3 23148185 23148476 -204376102 - AluY SINE Alu -21 290 1 22609 122 50 25 chr3 23148476 23148964 -204375614 - L1MA3 LINE L1 -3367 4357 3883 2854 51 17 3 chr3 23148964 23149314 -204375264 + THE1A LTR MaLR 1 355 0 11826 90 10 5 chr3 23149314 23150886 -204373692 + THE1A-int LTR MaLR 1 1580 0 2584 91 14 3 chr3 23150886 23151237 -204373341 + THE1A LTR MaLR 1 355 0 22609 122 50 25 chr3 23151237 23153152 -204371426 - L1MA3 LINE L1 -3840 3884 16 353 244 33 0 chr3 23153563 23153653 -204370925 + L1 LINE L1 4376 4468 -1678 407 219 12 0 chr3 23153659 23153741 -204370837 + MER74A LTR ERVL 42 124 -434 1000 213 29 53 chr3 23153777 23154166 -204370412 + MER74A LTR ERVL 131 558 0 2240 98 7 0 chr3 23154237 23154534 -204370044 + AluSq SINE Alu 2 300 -13 195 285 32 51 chr3 23155058 23155214 -204369364 - L2 LINE L2 -221 3051 2900 2557 52 20 0 chr3 23155853 23156158 -204368420 - AluY SINE Alu 0 311 1 269 291 58 0 chr3 23156733 23156819 -204367759 - MIR SINE MIR -12 250 160 1530 175 4 4 chr3 23156872 23157124 -204367454 + AluJo SINE Alu 35 286 -26 32 67 0 0 chr3 23158063 23158123 -204366455 + AT_rich Low_complexity Low_complexity 1 60 0 26 50 0 0 chr3 23158276 23158316 -204366262 + AT_rich Low_complexity Low_complexity 1 40 0 1762 181 3 16 chr3 23158466 23158770 -204365808 + AluJb SINE Alu 1 300 -12 226 235 0 37 chr3 23159284 23159365 -204365213 - L1MC5 LINE L1 -44 7917 7840 2504 78 0 0 chr3 23159484 23159793 -204364785 - AluY SINE Alu -2 309 1 1869 141 0 27 chr3 23159803 23160102 -204364476 - AluJb SINE Alu -21 291 1 1827 148 7 7 chr3 23160129 23160406 -204364172 + AluSx SINE Alu 1 277 -35 835 234 24 5 chr3 23160597 23160802 -204363776 + MER3 DNA MER1_type 1 209 0 2032 119 3 10 chr3 23160851 23161144 -204363434 + AluSc SINE Alu 1 291 -18 2209 116 0 0 chr3 23161691 23161983 -204362595 + AluSq SINE Alu 1 292 -21 309 316 116 7 chr3 23162914 23163069 -204361509 - L1MC/D LINE L1 -2176 5632 5461 1609 161 76 20 chr3 23163747 23164089 -204360489 - MER46B DNA MER2_type 0 236 1 2275 88 0 10 chr3 23165282 23165577 -204359001 - AluSg SINE Alu -18 292 1 2297 115 3 10 chr3 23165928 23166242 -204358336 + AluSx SINE Alu 1 312 0 694 230 75 5 chr3 23166250 23166437 -204358141 + MIR SINE MIR 3 202 -60 275 254 35 9 chr3 23166735 23166849 -204357729 + L1MC4 LINE L1 7926 8042 0 492 234 98 33 chr3 23167527 23167711 -204356867 - L1ME LINE L1 -414 5707 5512 377 236 154 16 chr3 23167862 23167985 -204356593 + MIR SINE MIR 75 214 -48 375 330 88 71 chr3 23168000 23168352 -204356226 - L2 LINE L2 0 3272 2915 2383 90 0 0 chr3 23168682 23168983 -204355595 + AluSq SINE Alu 1 301 -12 1359 193 0 36 chr3 23169484 23169758 -204354820 + AluJo SINE Alu 39 302 -10 637 231 60 41 chr3 23170106 23170374 -204354204 - L1ME LINE L1 -4706 1374 1102 331 233 47 41 chr3 23170424 23170551 -204354027 - L1ME LINE L1 -5208 875 751 22 0 0 0 chr3 23170713 23170735 -204353843 + AT_rich Low_complexity Low_complexity 1 22 0 596 281 96 36 chr3 23170875 23170989 -204353589 + L1ME4a LINE L1 5735 5841 -280 2128 125 0 10 chr3 23170989 23171294 -204353284 - AluSc SINE Alu -7 302 1 596 281 96 36 chr3 23171294 23171329 -204353249 + L1ME4a LINE L1 5841 5872 -249 1652 181 7 7 chr3 23171329 23171628 -204352950 + AluJb SINE Alu 1 299 -13 596 281 96 36 chr3 23171628 23171840 -204352738 + L1ME4a LINE L1 5872 6119 -2 21 95 0 0 chr3 23171875 23171938 -204352640 + AT_rich Low_complexity Low_complexity 1 63 0 1598 184 7 17 chr3 23172796 23173084 -204351494 - AluJb SINE Alu -25 287 3 829 212 5 52 chr3 23173390 23173583 -204350995 + MER5A DNA MER1_type 2 185 -4 419 188 0 10 chr3 23174877 23174978 -204349600 + L1MEc LINE L1 715 814 -5582 2106 121 0 38 chr3 23174979 23175294 -204349284 - AluSx SINE Alu -9 303 1 11378 65 5 1 chr3 23175320 23177646 -204346932 - L1PA6 LINE L1 0 6154 3893 4200 70 51 14 chr3 23177646 23178292 -204346286 + L1PA6 LINE L1 3229 3898 -2248 3359 110 18 75 chr3 23178309 23178937 -204345641 - L1PB2 LINE L1 -3 6148 5557 225 65 0 0 chr3 23182153 23182184 -204342394 + (CAG)n Simple_repeat Simple_repeat 2 32 0 263 152 106 15 chr3 23182233 23182299 -204342279 - MER103 DNA DNA -33 133 62 207 0 0 0 chr3 23182438 23182461 -204342117 + (TC)n Simple_repeat Simple_repeat 2 24 0 2145 149 50 36 chr3 23182512 23182989 -204341589 - L1MB2 LINE L1 -6 6165 5682 1646 174 26 19 chr3 23183309 23183619 -204340959 - AluJb SINE Alu 0 312 1 1570 199 51 3 chr3 23183622 23183796 -204340782 - AluJb SINE Alu -2 310 115 192 77 0 0 chr3 23183796 23183822 -204340756 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1570 199 51 3 chr3 23183822 23183943 -204340635 - AluJb SINE Alu -197 115 1 2518 54 0 7 chr3 23184367 23184664 -204339914 + AluSc SINE Alu 1 295 -14 1811 157 3 20 chr3 23184920 23185225 -204339353 + AluJo SINE Alu 1 300 -12 539 259 23 8 chr3 23187367 23187498 -204337080 + FLAM_A SINE Alu 1 133 0 2220 101 0 7 chr3 23188547 23188843 -204335735 + AluSg1 SINE Alu 1 294 -15 380 289 71 32 chr3 23189008 23189261 -204335317 - MLT1L LTR MaLR -332 283 21 216 0 0 0 chr3 23190802 23190826 -204333752 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 771 117 0 0 chr3 23190838 23190941 -204333637 - FLAM_C SINE Alu -33 110 8 779 144 40 0 chr3 23191061 23191186 -204333392 - FLAM_C SINE Alu -3 130 1 536 161 190 33 chr3 23193488 23193699 -204330879 - Charlie1 DNA MER1_type -94 2667 2424 1068 170 47 28 chr3 23193847 23194059 -204330519 - MER20 DNA MER1_type -2 217 2 1242 136 47 21 chr3 23194506 23194741 -204329837 - MER2 DNA MER2_type -96 249 9 226 269 25 42 chr3 23194747 23194827 -204329751 + L1ME3A LINE L1 5606 5685 -2123 1829 173 0 26 chr3 23194827 23195134 -204329444 + AluJb SINE Alu 5 303 -9 226 269 25 42 chr3 23195134 23195172 -204329406 + L1ME3A LINE L1 5685 5722 -2086 2119 104 3 11 chr3 23195283 23195570 -204329008 + AluSx SINE Alu 1 285 -27 1613 168 81 12 chr3 23195691 23196013 -204328565 + MER2 DNA MER2_type 1 344 0 1711 174 22 4 chr3 23196520 23196796 -204327782 + AluJo SINE Alu 1 281 -31 732 278 128 26 chr3 23197786 23198020 -204326558 + MIR SINE MIR 5 262 0 201 200 40 20 chr3 23199738 23199788 -204324790 + (TATATG)n Simple_repeat Simple_repeat 6 56 0 2851 267 146 42 chr3 23200208 23200492 -204324086 + L2 LINE L2 1525 1778 -1535 180 0 0 0 chr3 23200492 23200512 -204324066 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2141 108 0 3 chr3 23200514 23200802 -204323776 - AluSx SINE Alu -25 287 1 2851 267 146 42 chr3 23200802 23201590 -204322988 + L2 LINE L2 1778 2483 -830 1674 173 14 11 chr3 23201590 23201868 -204322710 - AluJo SINE Alu -1 311 33 2851 267 146 42 chr3 23201868 23202424 -204322154 + L2 LINE L2 2483 3311 -2 385 367 102 43 chr3 23202398 23202703 -204321875 - L2 LINE L2 -10 3262 2940 * 2206 115 0 0 chr3 23202717 23203005 -204321573 + AluSx SINE Alu 1 288 -24 22 0 0 0 chr3 23203224 23203246 -204321332 + AT_rich Low_complexity Low_complexity 1 22 0 1818 153 17 3 chr3 23203351 23203646 -204320932 + AluJo SINE Alu 1 299 -13 929 202 37 125 chr3 23203694 23203909 -204320669 + L1ME3A LINE L1 5728 5891 -273 2115 134 7 3 chr3 23203909 23204215 -204320363 + AluSx SINE Alu 1 307 -5 929 202 37 125 chr3 23204215 23204407 -204320171 + L1ME3A LINE L1 5891 6098 -66 210 175 0 0 chr3 23204715 23204755 -204319823 - L2 LINE L2 -2 3311 3272 22 0 0 0 chr3 23204820 23204842 -204319736 + AT_rich Low_complexity Low_complexity 1 22 0 199 137 118 0 chr3 23204975 23205026 -204319552 + MIR SINE MIR 81 137 -71 835 210 116 17 chr3 23207523 23207756 -204316822 - L3 LINE CR1 -11 1566 1311 228 159 32 63 chr3 23207899 23207962 -204316616 + MARNA DNA Mariner 10 70 -516 822 242 42 12 chr3 23209245 23209485 -204315093 - MIR SINE MIR 0 262 16 398 174 0 0 chr3 23209629 23209698 -204314880 - L2 LINE L2 -11 3302 3234 1171 157 32 14 chr3 23210769 23210985 -204313593 - L1PA15 LINE L1 -7 6158 5939 1220 255 50 12 chr3 23211133 23211474 -204313104 + L1MC1 LINE L1 3 356 -6186 827 219 26 10 chr3 23211475 23211667 -204312911 + L1MC1 LINE L1 2951 3145 -3499 1764 89 0 0 chr3 23211667 23211880 -204312698 + AluSq SINE Alu 79 291 -22 4927 194 139 78 chr3 23211883 23212497 -204312081 + L1MC1 LINE L1 3541 4116 -2715 2234 93 14 0 chr3 23212497 23212787 -204311791 + AluSp SINE Alu 1 294 -19 4927 194 139 78 chr3 23212787 23212940 -204311638 + L1MC1 LINE L1 4116 4258 -2573 1098 165 0 6 chr3 23212940 23213110 -204311468 + AluJb SINE Alu 85 253 -59 4927 194 139 78 chr3 23213110 23214492 -204310086 + L1MC1 LINE L1 4258 6025 -806 2447 97 0 0 chr3 23214492 23214802 -204309776 - AluSx SINE Alu -2 310 1 4927 194 139 78 chr3 23214802 23214932 -204309646 + L1MC1 LINE L1 6025 6146 -685 773 161 22 0 chr3 23214932 23215069 -204309509 + L1MC1 LINE L1 6421 6560 -271 756 248 80 13 chr3 23215530 23215756 -204308822 + MIR SINE MIR 22 262 0 369 276 21 48 chr3 23215818 23216044 -204308534 + MIR SINE MIR 56 242 -20 872 293 50 38 chr3 23216172 23216616 -204307962 - LTR16B LTR ERVL -2 462 14 281 253 123 39 chr3 23216862 23217016 -204307562 + MIR SINE MIR 81 247 -15 2375 97 0 3 chr3 23217588 23217899 -204306679 - AluSx SINE Alu -2 310 1 603 262 35 23 chr3 23218250 23218422 -204306156 + MIR SINE MIR 40 213 -49 946 283 77 18 chr3 23218458 23218797 -204305781 + MLT1H1 LTR MaLR 1 359 -196 317 140 88 0 chr3 23218849 23218906 -204305672 + MLT1H1 LTR MaLR 450 511 -19 1272 217 131 50 chr3 23219158 23219661 -204304917 - LTR10B LTR ERV1 -3 544 1 2385 107 0 0 chr3 23219681 23219991 -204304587 + AluSx SINE Alu 1 310 -2 324 307 79 0 chr3 23220093 23220220 -204304358 - MIR3 SINE MIR -42 166 30 2259 102 7 0 chr3 23220749 23221043 -204303535 + AluSp SINE Alu 1 296 -17 842 135 163 0 chr3 23221043 23221184 -204303394 + AluSq SINE Alu 134 297 -16 739 112 112 26 chr3 23221761 23221877 -204302701 + AluSp SINE Alu 2 127 -186 246 293 81 0 chr3 23222369 23222468 -204302110 + MIR SINE MIR 81 187 -75 942 189 22 0 chr3 23222504 23222689 -204301889 - MER5A DNA MER1_type 0 189 1 1769 227 93 47 chr3 23223089 23223445 -204301133 - MLT1F LTR MaLR 0 542 153 2255 100 3 0 chr3 23223445 23223735 -204300843 - AluSg SINE Alu -19 291 1 1769 227 93 47 chr3 23223735 23223894 -204300684 - MLT1F LTR MaLR -389 153 3 822 283 70 19 chr3 23224021 23224434 -204300144 + LTR33 LTR ERVL 39 472 -49 1052 307 49 43 chr3 23224525 23224714 -204299864 + MLT1K LTR MaLR 2 188 -400 2337 92 3 0 chr3 23224714 23225009 -204299569 + AluY SINE Alu 1 296 -15 1052 307 49 43 chr3 23225009 23225350 -204299228 + MLT1K LTR MaLR 188 535 -53 202 267 0 0 chr3 23225350 23225395 -204299183 + GA-rich Low_complexity Low_complexity 3 47 0 189 0 0 0 chr3 23225601 23225622 -204298956 + (TTCA)n Simple_repeat Simple_repeat 1 21 0 201 140 60 20 chr3 23225783 23225833 -204298745 + MIR SINE MIR 92 143 -119 1948 237 39 34 chr3 23226316 23226651 -204297927 + MLT1F LTR MaLR 2 343 -199 2055 176 31 64 chr3 23226651 23227134 -204297444 - MLT1C LTR MaLR 0 467 1 1948 237 39 34 chr3 23227134 23227334 -204297244 + MLT1F LTR MaLR 343 540 -2 2277 53 0 0 chr3 23231504 23231823 -204292755 + AluY SINE Alu 21 339 0 835 188 0 0 chr3 23231835 23232008 -204292570 - FLAM_A SINE Alu 0 173 1 736 248 57 68 chr3 23232042 23232261 -204292317 + L1MC/D LINE L1 5258 5473 -2335 2046 149 0 0 chr3 23232261 23232563 -204292015 - AluJb SINE Alu -8 304 3 736 248 57 68 chr3 23232563 23232726 -204291852 + L1MC/D LINE L1 5473 5636 -2172 1205 127 6 0 chr3 23232729 23232902 -204291676 - AluSp SINE Alu -3 310 137 2027 74 0 31 chr3 23233139 23233397 -204291181 + AluY SINE Alu 50 299 -12 611 253 17 28 chr3 23234361 23234539 -204290039 - MER5B DNA MER1_type -2 176 1 839 208 147 116 chr3 23234940 23235161 -204289417 - L1ME4a LINE L1 0 6121 5908 2183 124 3 0 chr3 23235161 23235467 -204289111 + AluSq SINE Alu 1 307 -6 839 208 147 116 chr3 23235467 23235732 -204288846 - L1ME4a LINE L1 -213 5908 5612 2144 116 20 0 chr3 23235732 23236024 -204288554 - AluSx SINE Alu -14 298 1 839 208 147 116 chr3 23236024 23236113 -204288465 - L1ME4a LINE L1 -509 5612 5527 1003 176 54 17 chr3 23236143 23236529 -204288049 + LTR37B LTR ERV1 4 468 0 2142 151 33 3 chr3 23236866 23237203 -204287375 + MER7A DNA MER2_type 2 346 0 923 295 194 31 chr3 23237981 23238930 -204285648 + L3 LINE CR1 370 1473 -104 429 246 47 35 chr3 23239670 23239841 -204284737 + MER5B DNA MER1_type 1 173 -5 212 206 234 19 chr3 23239881 23239988 -204284590 + MER5A DNA MER1_type 40 169 -20 * 454 146 101 0 chr3 23239913 23240002 -204284576 - MER5A DNA MER1_type -83 106 9 1305 215 35 24 chr3 23242567 23242907 -204281671 - MER2 DNA MER2_type 0 344 1 566 278 188 18 chr3 23243502 23243891 -204280687 - L2 LINE L2 -31 3282 2828 425 306 35 12 chr3 23243908 23244081 -204280497 + L2 LINE L2 2615 2791 -523 184 346 0 0 chr3 23246010 23246062 -204278516 - MIR SINE MIR -127 81 30 1473 96 0 10 chr3 23246128 23246326 -204278252 + AluSg/x SINE Alu 99 294 -16 841 208 27 11 chr3 23246420 23246603 -204277975 - MER5A DNA MER1_type 0 189 4 458 215 108 8 chr3 23246952 23247082 -204277496 + L1MEd LINE L1 16 158 -5961 2201 102 3 3 chr3 23247832 23248141 -204276437 + AluSq SINE Alu 1 309 0 1353 176 12 33 chr3 23248326 23248570 -204276008 + AluJb SINE Alu 1 239 -73 1841 157 33 13 chr3 23249043 23249349 -204275229 - AluJo SINE Alu 0 312 1 6483 136 75 45 chr3 23249986 23249999 -204274579 + L1MC1 LINE L1 318 329 -6097 2254 78 4 0 chr3 23249999 23250328 -204274250 + AluY SINE Alu 1 330 0 6483 136 75 45 chr3 23250328 23250830 -204273748 + L1MC1 LINE L1 329 814 -5612 1760 135 31 35 chr3 23250830 23251119 -204273459 + AluSx SINE Alu 1 288 -24 6483 136 75 45 chr3 23251119 23251873 -204272705 + L1MC1 LINE L1 814 1633 -4793 2043 128 147 11 chr3 23251873 23252248 -204272330 - MSTA LTR MaLR 0 428 3 6483 136 75 45 chr3 23252248 23252305 -204272273 + L1MC1 LINE L1 1633 1687 -4739 2433 231 24 23 chr3 23252316 23252613 -204271965 + L1MC1 LINE L1 2287 2582 -3844 2425 122 34 6 chr3 23252613 23252967 -204271611 + THE1B LTR MaLR 1 364 0 2433 231 24 23 chr3 23252967 23253956 -204270622 + L1MC1 LINE L1 2582 3677 -2749 2517 80 0 0 chr3 23253956 23254257 -204270321 + AluSq SINE Alu 3 303 -10 2433 231 24 23 chr3 23254257 23254561 -204270017 + L1MC1 LINE L1 3677 3979 -2447 2062 224 37 26 chr3 23254561 23255050 -204269528 + MLT2B2 LTR ERVL 1 494 -21 5560 107 102 28 chr3 23255050 23256135 -204268443 + MER11A LTR ERVK 1 1266 0 841 223 0 38 chr3 23256161 23256216 -204268362 + L1MC1 LINE L1 3974 4030 -2396 497 73 118 0 chr3 23256216 23256284 -204268294 + MADE1 DNA Mariner 1 76 -4 841 223 0 38 chr3 23256284 23256412 -204268166 + L1MC1 LINE L1 4030 4150 -2276 696 198 8 0 chr3 23256412 23256533 -204268045 + AluJb SINE Alu 179 300 -12 2950 214 62 67 chr3 23256533 23257029 -204267549 + L1MC1 LINE L1 4168 4665 -1761 2391 77 20 0 chr3 23257029 23257326 -204267252 + AluY SINE Alu 1 303 -8 2950 214 62 67 chr3 23257326 23257592 -204266986 + L1MC1 LINE L1 4665 4928 -1498 1566 181 3 36 chr3 23257592 23257901 -204266677 + AluJo SINE Alu 6 304 -8 2950 214 62 67 chr3 23257901 23258113 -204266465 + L1MC1 LINE L1 4928 5139 -1287 645 173 0 153 chr3 23258114 23258264 -204266314 - FLAM_A SINE Alu -10 132 6 4178 153 34 69 chr3 23258271 23258721 -204265857 + L1MC1 LINE L1 5123 5587 -1026 2199 95 20 10 chr3 23258721 23259025 -204265553 + AluSc SINE Alu 1 307 -2 4178 153 34 69 chr3 23259025 23259225 -204265353 + L1MC1 LINE L1 5587 5792 -821 2198 101 0 7 chr3 23259225 23259521 -204265057 - AluSp SINE Alu -19 294 1 4178 153 34 69 chr3 23259521 23260058 -204264520 + L1MC1 LINE L1 5792 6286 -327 1192 202 9 0 chr3 23260058 23260265 -204264313 + L1MC1 LINE L1 6119 6333 0 1012 310 88 47 chr3 23260265 23260957 -204263621 + L1ME3A LINE L1 169 896 -5223 1971 158 3 0 chr3 23260957 23261261 -204263317 + AluJb SINE Alu 1 305 -7 1012 310 88 47 chr3 23261261 23261279 -204263299 + L1ME3A LINE L1 896 912 -5207 242 256 83 23 chr3 23261317 23261439 -204263139 + L1ME3A LINE L1 1021 1153 -4966 1777 173 36 7 chr3 23261439 23261740 -204262838 + AluJo SINE Alu 1 310 -2 460 279 198 19 chr3 23261781 23262089 -204262489 + L1ME3A LINE L1 1153 1515 -4614 187 175 25 38 chr3 23262285 23262365 -204262213 + GA-rich Low_complexity Low_complexity 3 81 0 1554 229 219 16 chr3 23262634 23263140 -204261438 + MLT1E1 LTR MaLR 39 647 -7 582 295 48 53 chr3 23263148 23263622 -204260956 + HAL1b LINE L1 181 652 -696 345 259 0 27 chr3 23263645 23263757 -204260821 + HAL1b LINE L1 733 841 -507 360 274 79 24 chr3 23263764 23263928 -204260650 + L1ME3A LINE L1 3090 3262 -2867 892 150 14 0 chr3 23264055 23264195 -204260383 - AluSg/x SINE Alu -7 305 164 371 312 93 60 chr3 23264459 23264728 -204259850 - MLT1J LTR MaLR -137 374 97 576 125 231 81 chr3 23264752 23264912 -204259666 - MER53 DNA DNA -3 186 3 271 95 0 0 chr3 23265045 23265087 -204259491 - L1MC5 LINE L1 -436 7525 7484 501 245 198 35 chr3 23265352 23265802 -204258776 + MLT1H LTR MaLR 1 549 0 584 278 180 19 chr3 23265809 23266483 -204258095 + L1ME3A LINE L1 4940 5753 -408 236 229 74 90 chr3 23266503 23266625 -204257953 + L1ME3A LINE L1 5948 6067 -86 2363 85 0 0 chr3 23267068 23267362 -204257216 - AluSc SINE Alu -9 300 7 1469 55 76 114 chr3 23268782 23269019 -204255559 + MER30 DNA MER1_type 1 228 -2 450 292 62 25 chr3 23269507 23269668 -204254910 - MER5B DNA MER1_type -4 174 8 2215 131 3 0 chr3 23269787 23270092 -204254486 - AluSx SINE Alu -6 306 1 308 217 64 77 chr3 23270143 23270273 -204254305 + L1ME3 LINE L1 6040 6332 -2 2587 135 8 3 chr3 23270372 23270734 -204253844 + THE1B LTR MaLR 1 364 0 10962 101 30 62 chr3 23270736 23272181 -204252397 + THE1B-int LTR MaLR 3 1392 -188 2388 81 0 0 chr3 23272181 23272478 -204252100 - AluY SINE Alu -14 297 1 10962 101 30 62 chr3 23272478 23272662 -204251916 + THE1B-int LTR MaLR 1392 1580 0 2542 108 14 6 chr3 23272664 23273017 -204251561 + THE1B LTR MaLR 8 363 -1 600 196 77 14 chr3 23274903 23275046 -204249532 - MIR SINE MIR -106 156 5 420 322 40 40 chr3 23275066 23275215 -204249363 + L2 LINE L2 3124 3272 0 214 346 63 79 chr3 23275975 23276229 -204248349 - L2 LINE L2 0 3272 3023 582 237 8 8 chr3 23276423 23276541 -204248037 + FLAM_A SINE Alu 1 118 -15 508 267 144 78 chr3 23276569 23276839 -204247739 - L2 LINE L2 -25 3247 2960 375 311 18 30 chr3 23276845 23277009 -204247569 - L2 LINE L2 -852 2462 2301 812 253 118 0 chr3 23277248 23277469 -204247109 - MIR SINE MIR -15 247 1 2137 94 14 0 chr3 23277533 23277808 -204246770 + AluSp SINE Alu 1 279 -34 315 49 0 0 chr3 23277823 23277864 -204246714 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 466 258 40 7 chr3 23278482 23278633 -204245945 + L1M4 LINE L1 2724 2879 -3267 483 189 36 0 chr3 23278649 23278760 -204245818 + L1M4 LINE L1 3208 3322 -2824 * 1292 218 73 46 chr3 23278755 23279278 -204245300 + L1M4 LINE L1 2876 3412 -2734 293 124 56 101 chr3 23279854 23279943 -204244635 - L1ME4a LINE L1 -3 6118 6034 2469 100 0 0 chr3 23279943 23280253 -204244325 + AluSx SINE Alu 1 310 -2 1363 192 22 11 chr3 23280826 23281102 -204243476 + AluJo SINE Alu 19 297 -15 228 67 0 0 chr3 23281429 23281459 -204243119 + (TG)n Simple_repeat Simple_repeat 2 31 0 2314 86 0 26 chr3 23281726 23282028 -204242550 - AluSc SINE Alu -15 294 1 2298 83 7 20 chr3 23282077 23282242 -204242336 - AluSq SINE Alu -15 298 137 2342 93 7 0 chr3 23282242 23282543 -204242035 - AluSp SINE Alu -10 303 1 2298 83 7 20 chr3 23282543 23282679 -204241899 - AluSq SINE Alu -176 137 1 417 208 0 0 chr3 23283192 23283269 -204241309 + MER103 DNA DNA 51 127 -39 183 288 25 88 chr3 23284303 23284383 -204240195 - L2 LINE L2 -3 3310 3236 2121 122 3 32 chr3 23284564 23284876 -204239702 + AluSx SINE Alu 2 304 -8 336 286 38 68 chr3 23284879 23284963 -204239615 + MIR SINE MIR 23 103 -159 2248 118 0 3 chr3 23284963 23285267 -204239311 + AluSx SINE Alu 1 303 -9 336 286 38 68 chr3 23285267 23285315 -204239263 + MIR SINE MIR 103 151 -111 222 261 0 15 chr3 23285345 23285410 -204239168 + MIR SINE MIR 137 200 -62 1624 209 0 7 chr3 23285415 23285711 -204238867 - AluJb SINE Alu -18 294 1 1215 204 46 24 chr3 23285966 23286294 -204238284 + MER2 DNA MER2_type 2 336 -9 247 269 0 54 chr3 23286516 23286609 -204237969 - L1MC4 LINE L1 -1340 6702 6615 260 229 0 83 chr3 23286611 23286707 -204237871 + L1MC4 LINE L1 6615 6702 -1340 495 178 0 50 chr3 23286722 23286902 -204237676 + (TA)n Simple_repeat Simple_repeat 1 171 0 21 36 0 0 chr3 23286925 23286953 -204237625 + AT_rich Low_complexity Low_complexity 1 28 0 1141 171 72 81 chr3 23287278 23287612 -204236966 + L1MA9 LINE L1 5946 6276 -36 2318 92 0 3 chr3 23287674 23287968 -204236610 - AluSx SINE Alu -19 293 1 293 124 56 101 chr3 23287968 23288057 -204236521 + L1ME4a LINE L1 6034 6118 -3 431 222 0 53 chr3 23288315 23288504 -204236074 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 560 417 0 0 chr3 23288504 23288856 -204235722 + (CGTG)n Simple_repeat Simple_repeat 1 352 0 234 294 47 0 chr3 23288957 23289042 -204235536 + L1MC4 LINE L1 6615 6703 -1339 * 296 233 0 44 chr3 23288977 23289067 -204235511 - L1MC4 LINE L1 -1342 6700 6615 1786 165 0 20 chr3 23289070 23289367 -204235211 - AluJb SINE Alu -21 291 1 2333 93 0 13 chr3 23289633 23289946 -204234632 - AluSc SINE Alu 0 309 1 2158 117 3 3 chr3 23290693 23290992 -204233586 - AluSx SINE Alu -13 299 1 1988 158 0 7 chr3 23291227 23291530 -204233048 - AluJb SINE Alu -11 301 1 440 246 8 87 chr3 23291994 23292120 -204232458 + FLAM_A SINE Alu 1 116 -26 1985 155 3 0 chr3 23292123 23292433 -204232145 - AluJb SINE Alu -1 311 1 618 180 18 0 chr3 23292433 23292544 -204232034 - MLT1B LTR MaLR -277 113 1 403 276 167 13 chr3 23292566 23292722 -204231856 + MIR SINE MIR 14 193 -69 217 368 75 9 chr3 23294085 23294155 -204230423 - MIR SINE MIR -79 129 48 2407 91 0 0 chr3 23294155 23294452 -204230126 - AluSg SINE Alu -13 297 1 217 368 75 9 chr3 23294452 23294487 -204230091 - MIR SINE MIR -160 48 17 1121 167 24 33 chr3 23295402 23295612 -204228966 - MER3 DNA MER1_type 0 209 2 306 261 90 148 chr3 23296142 23296499 -204228079 - L2 LINE L2 -50 3222 2887 1665 154 22 11 chr3 23297367 23297640 -204226938 + AluSx SINE Alu 11 286 -26 1014 171 0 12 chr3 23297952 23298122 -204226456 + FRAM SINE Alu 1 160 -16 189 0 0 0 chr3 23298833 23298854 -204225724 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2397 76 0 0 chr3 23299046 23299349 -204225229 - L1P LINE L1 -5843 303 1 248 250 0 0 chr3 23299748 23299800 -204224778 - L2 LINE L2 0 3272 3221 883 279 102 48 chr3 23300426 23300841 -204223737 + L1M4 LINE L1 3928 4319 -1827 1836 154 3 3 chr3 23300841 23301126 -204223452 + AluSx SINE Alu 24 308 -4 883 279 102 48 chr3 23301126 23301601 -204222977 + L1M4 LINE L1 4319 4866 -1280 1188 76 0 0 chr3 23301613 23301758 -204222820 + AluSq SINE Alu 30 174 -139 22 70 0 0 chr3 23301991 23302034 -204222544 + AT_rich Low_complexity Low_complexity 1 43 0 470 329 111 8 chr3 23302070 23302304 -204222274 - MIR SINE MIR 0 262 5 2274 180 43 35 chr3 23302305 23302765 -204221813 + MLT2C2 LTR ERVL 1 464 0 222 325 51 45 chr3 23302792 23302949 -204221629 - MIR SINE MIR -57 205 48 1490 128 0 0 chr3 23303083 23303287 -204221291 + AluSq SINE Alu 1 204 -109 10067 50 1 1 chr3 23304833 23306083 -204218495 + L1P LINE L1 1715 2964 -3182 1108 46 0 0 chr3 23306184 23306315 -204218263 + AluSc SINE Alu 142 272 -37 450 304 88 44 chr3 23306732 23306912 -204217666 - MARNA DNA Mariner -119 467 296 2224 99 3 0 chr3 23306912 23307227 -204217351 + AluSp SINE Alu 1 313 0 450 304 88 44 chr3 23307227 23307431 -204217147 - MARNA DNA Mariner -290 296 66 535 282 67 5 chr3 23308412 23308607 -204215971 - MIR SINE MIR -4 258 52 276 197 118 0 chr3 23308779 23308855 -204215723 + L1ME3 LINE L1 5890 5974 -188 2064 142 19 30 chr3 23308878 23309245 -204215333 + MLT1A1 LTR MaLR 1 363 -2 485 180 9 9 chr3 23309246 23309357 -204215221 + MLT1A1-int LTR MaLR 3 113 -1622 26 0 0 0 chr3 23309368 23309394 -204215184 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr3 23309661 23309687 -204214891 + AT_rich Low_complexity Low_complexity 1 26 0 230 333 107 20 chr3 23310500 23310650 -204213928 - MIR SINE MIR -70 192 30 22 0 0 0 chr3 23310702 23310724 -204213854 + AT_rich Low_complexity Low_complexity 1 22 0 2071 135 10 6 chr3 23311269 23311580 -204212998 + AluSx SINE Alu 1 312 0 6654 45 6 0 chr3 23311645 23312490 -204212088 - L1PA5 LINE L1 -2 6152 5303 792 229 0 6 chr3 23315584 23315741 -204208837 - FRAM SINE Alu -13 163 8 1215 173 17 4 chr3 23316975 23317206 -204207372 + L1MB8 LINE L1 5789 6022 -156 2229 99 0 32 chr3 23317232 23317545 -204207033 - AluSx SINE Alu -9 303 1 604 174 97 107 chr3 23317963 23318159 -204206419 - MER20 DNA MER1_type -3 216 23 359 231 135 14 chr3 23318181 23318332 -204206246 + L1ME3 LINE L1 5660 5829 -333 390 169 34 11 chr3 23319426 23319515 -204205063 + MER103 DNA DNA 2 92 -74 212 171 0 0 chr3 23320079 23320120 -204204458 + A-rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr3 23320590 23320620 -204203958 + AT_rich Low_complexity Low_complexity 1 30 0 608 264 26 31 chr3 23321160 23321353 -204203225 + MIR SINE MIR 24 215 -47 2231 104 24 0 chr3 23321534 23321832 -204202746 - AluSx SINE Alu -5 307 3 1690 182 26 10 chr3 23321834 23322136 -204202442 - AluJo SINE Alu -5 307 1 756 247 0 0 chr3 23322368 23322514 -204202064 + FRAM SINE Alu 1 146 -30 445 215 123 8 chr3 23322553 23322683 -204201895 - MIR SINE MIR -55 207 63 207 0 0 0 chr3 23322684 23322707 -204201871 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 653 200 8 17 chr3 23322709 23322829 -204201749 - FLAM_A SINE Alu -13 120 2 180 133 0 0 chr3 23323719 23323749 -204200829 - MIR3 SINE MIR -19 189 160 23 54 0 0 chr3 23325014 23325051 -204199527 + AT_rich Low_complexity Low_complexity 1 37 0 1638 151 59 11 chr3 23325137 23325409 -204199169 - AluJo SINE Alu -27 285 1 1640 180 28 3 chr3 23325427 23325711 -204198867 - AluJb SINE Alu -16 296 6 891 199 80 74 chr3 23326059 23326411 -204198167 - L1ME2 LINE L1 -19 6145 5792 1989 146 3 3 chr3 23327296 23327597 -204196981 - AluSx SINE Alu -11 301 1 1090 261 87 34 chr3 23327668 23328164 -204196414 + MER77 LTR ERV1 54 599 -6 662 211 99 0 chr3 23328321 23328482 -204196096 + MLT1C LTR MaLR 287 463 -4 1593 165 91 0 chr3 23329063 23329348 -204195230 + AluJo SINE Alu 1 311 -1 1939 176 0 7 chr3 23330253 23330555 -204194023 + AluJb SINE Alu 5 304 -8 841 210 258 0 chr3 23330613 23330884 -204193694 - MER2 DNA MER2_type -2 342 2 12422 130 63 47 chr3 23331018 23331317 -204193261 + Tigger1 DNA MER2_type 3 296 -2122 1979 147 3 0 chr3 23331317 23331602 -204192976 + AluSx SINE Alu 4 289 -23 12422 130 63 47 chr3 23331602 23332847 -204191731 + Tigger1 DNA MER2_type 296 1519 -899 2294 83 36 0 chr3 23332847 23333149 -204191429 + AluSq SINE Alu 1 313 0 12422 130 63 47 chr3 23333149 23333853 -204190725 + Tigger1 DNA MER2_type 1519 2296 -122 1664 193 4 4 chr3 23333853 23334133 -204190445 - AluJo SINE Alu -24 288 9 12422 130 63 47 chr3 23334133 23334258 -204190320 + Tigger1 DNA MER2_type 2296 2417 -1 664 246 116 43 chr3 23334392 23334738 -204189840 - MLT1I LTR MaLR 0 409 39 181 307 117 58 chr3 23334807 23334944 -204189634 + L2 LINE L2 2910 3054 -218 1350 146 154 20 chr3 23335449 23335702 -204188876 - AluJb SINE Alu -15 287 1 964 188 167 61 chr3 23336339 23336668 -204187910 + MLT1A1 LTR MaLR 1 364 -1 1921 72 8 0 chr3 23337185 23337422 -204187156 + AluSq SINE Alu 72 310 -3 2165 109 7 7 chr3 23338429 23338732 -204185846 + AluSx SINE Alu 1 303 -9 1254 209 4 4 chr3 23339550 23339785 -204184793 - MER8 DNA MER2_type 0 239 5 1442 150 124 23 chr3 23341632 23341939 -204182639 + MER44D DNA MER2_type 1 608 -1 181 323 108 54 chr3 23341956 23342086 -204182492 + MIR3 SINE MIR 70 206 -2 1713 173 25 3 chr3 23343159 23343442 -204181136 - AluJo SINE Alu -11 301 13 6452 106 49 22 chr3 23343846 23344202 -204180376 - MER11C LTR ERVK 0 1071 726 2073 21 0 0 chr3 23344202 23344437 -204180141 + 7SLRNA srpRNA srpRNA 1 235 -85 6452 106 49 22 chr3 23344437 23345123 -204179455 - MER11C LTR ERVK -345 726 1 1839 190 125 4 chr3 23345584 23346073 -204178505 + L1ME2 LINE L1 5615 6162 -2 26 0 0 0 chr3 23346236 23346262 -204178316 + AT_rich Low_complexity Low_complexity 1 26 0 2390 78 3 0 chr3 23346602 23346908 -204177670 + AluY SINE Alu 1 307 -4 227 369 124 59 chr3 23346913 23347476 -204177102 + L3 LINE CR1 100 699 -878 4905 97 23 55 chr3 23347478 23348276 -204176302 + SVA Other Other 95 866 -520 1115 113 16 115 chr3 23348287 23348774 -204175804 + SVA Other Other 430 868 -518 6068 71 26 52 chr3 23348818 23349807 -204174771 + SVA Other Other 433 1396 0 225 266 21 64 chr3 23349814 23349908 -204174670 + L3 LINE CR1 689 778 -799 465 19 0 0 chr3 23349970 23350024 -204174554 + (CA)n Simple_repeat Simple_repeat 2 55 0 238 277 39 69 chr3 23350107 23350237 -204174341 + L3 LINE CR1 1092 1217 -360 510 231 77 0 chr3 23350237 23350380 -204174198 + MER105 DNA DNA 1 154 -50 1929 137 13 22 chr3 23350728 23351041 -204173537 - AluSq SINE Alu -3 310 1 13503 181 24 5 chr3 23351042 23354683 -204169895 - L1P5 LINE L1 -367 6500 2796 852 117 0 0 chr3 23354688 23354825 -204169753 - L1P5 LINE L1 -4129 2734 2598 2048 116 20 3 chr3 23404915 23405209 -204119369 + AluSx SINE Alu 1 299 -13 24 32 0 0 chr3 23405686 23405717 -204118861 + AT_rich Low_complexity Low_complexity 1 31 0 394 298 32 8 chr3 23406356 23406480 -204118098 + L2 LINE L2 2504 2630 -684 2178 103 17 7 chr3 23406536 23406838 -204117740 + AluSc SINE Alu 4 308 -1 479 278 86 5 chr3 23406855 23407042 -204117536 + L2 LINE L2 3060 3261 -52 24 53 0 0 chr3 23407316 23407354 -204117224 + AT_rich Low_complexity Low_complexity 1 38 0 879 186 77 41 chr3 23407457 23407678 -204116900 + AluJo SINE Alu 83 311 -1 503 230 165 99 chr3 23408346 23408553 -204116025 + MLT1J LTR MaLR 1 193 -318 1868 92 0 88 chr3 23408553 23408859 -204115719 + AluY SINE Alu 1 279 -32 247 24 24 24 chr3 23408861 23408902 -204115676 + (CAAAA)n Simple_repeat Simple_repeat 1 41 0 503 230 165 99 chr3 23408902 23409104 -204115474 + MLT1J LTR MaLR 193 440 -71 1441 145 16 36 chr3 23409375 23409624 -204114954 + AluJo SINE Alu 38 281 -31 200 213 33 49 chr3 23411185 23411246 -204113332 - MER5A DNA MER1_type -129 60 1 228 67 0 0 chr3 23411373 23411403 -204113175 + (TA)n Simple_repeat Simple_repeat 2 31 0 1441 202 84 81 chr3 23411969 23411987 -204112591 + L1M4 LINE L1 2669 2685 -3461 2304 165 7 30 chr3 23411987 23412101 -204112477 - MSTB LTR MaLR 0 426 311 2279 87 0 0 chr3 23412101 23412399 -204112179 + AluSx SINE Alu 1 298 -14 2304 165 7 30 chr3 23412399 23412720 -204111858 - MSTB LTR MaLR -115 311 1 1441 202 84 81 chr3 23412720 23413296 -204111282 + L1M4 LINE L1 2685 3265 -2881 915 238 92 27 chr3 23413349 23413643 -204110935 + L1M4 LINE L1 3638 3950 -2196 24 0 0 0 chr3 23413643 23413667 -204110911 + AT_rich Low_complexity Low_complexity 1 24 0 1178 102 0 0 chr3 23413669 23413826 -204110752 - AluSg/x SINE Alu -21 291 135 3822 229 96 26 chr3 23413839 23414316 -204110262 + L1M4 LINE L1 3952 4394 -1752 2001 134 28 0 chr3 23414316 23414607 -204109971 + AluSx SINE Alu 1 299 -13 3822 229 96 26 chr3 23414607 23415415 -204109163 + L1M4 LINE L1 4394 5328 -818 584 293 57 47 chr3 23415418 23415842 -204108736 + L1ME3A LINE L1 4909 5336 -810 2182 107 0 0 chr3 23415859 23416150 -204108428 - AluSx SINE Alu -21 291 1 3811 209 35 22 chr3 23416283 23417112 -204107466 - MER21B LTR ERV1 -20 843 4 526 270 194 12 chr3 23417147 23417399 -204107179 + L1ME3A LINE L1 5503 5800 -370 259 226 108 0 chr3 23417415 23417508 -204107070 + L1ME3A LINE L1 5860 5962 -208 323 200 208 54 chr3 23417626 23417756 -204106822 + L1ME3A LINE L1 6020 6169 -1 2228 110 10 0 chr3 23417967 23418275 -204106303 + AluY SINE Alu 1 311 0 486 0 0 0 chr3 23418823 23418877 -204105701 + (CA)n Simple_repeat Simple_repeat 2 55 0 1291 243 56 63 chr3 23419251 23419696 -204104882 - MLT1E3 LTR MaLR -43 581 140 1748 126 78 28 chr3 23419738 23420095 -204104483 + THE1C LTR MaLR 1 375 0 313 209 12 47 chr3 23420582 23420668 -204103910 + MIR3 SINE MIR 116 198 -10 6084 166 23 8 chr3 23420910 23422084 -204102494 + L1 LINE L1 3998 5188 -958 416 186 98 0 chr3 23422091 23422193 -204102385 + L1 LINE L1 5224 5335 -811 907 193 128 0 chr3 23422193 23422380 -204102198 + MLT2B3 LTR ERVL 1 211 -343 715 119 30 22 chr3 23422381 23422515 -204102063 + L1MA7 LINE L1 6155 6289 -2 411 278 83 19 chr3 23422765 23422952 -204101626 + L1ME1 LINE L1 496 699 -5908 644 188 124 60 chr3 23422952 23423170 -204101408 - MER106A DNA MER1_type 0 236 5 411 278 83 19 chr3 23423170 23423187 -204101391 + L1ME1 LINE L1 699 713 -5894 386 211 22 22 chr3 23423192 23423282 -204101296 + L1ME1 LINE L1 746 835 -5772 246 200 146 0 chr3 23423296 23423406 -204101172 + L1ME1 LINE L1 4642 4767 -1659 1834 217 30 30 chr3 23423476 23423936 -204100642 + MER101 LTR ERV1 11 470 -4 2029 213 122 21 chr3 23423938 23424730 -204099848 + L1ME1 LINE L1 5289 6163 -283 * 3769 158 216 12 chr3 23424721 23425790 -204098788 + L1MC1 LINE L1 1284 2569 -3857 1453 118 0 108 chr3 23425771 23426058 -204098520 + L1M4c LINE L1 6 261 -6123 * 5957 156 48 9 chr3 23426076 23427342 -204097236 + L1MC1 LINE L1 5296 6613 0 428 235 84 8 chr3 23427340 23427459 -204097119 + L1ME1 LINE L1 6156 6283 -163 * 690 221 13 0 chr3 23427467 23427625 -204096953 + L1MA10 LINE L1 6175 6334 0 26 64 0 0 chr3 23427888 23427935 -204096643 + AT_rich Low_complexity Low_complexity 1 47 0 344 317 84 0 chr3 23428008 23428175 -204096403 + L1MC4a LINE L1 5733 5913 -1895 22 70 0 0 chr3 23429572 23429615 -204094963 + AT_rich Low_complexity Low_complexity 1 43 0 212 330 51 91 chr3 23429820 23430017 -204094561 - MIR3 SINE MIR -16 192 4 359 248 84 84 chr3 23430138 23430412 -204094166 + MLT1L LTR MaLR 12 285 -330 240 35 0 0 chr3 23430412 23430441 -204094137 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 27 29 0 0 chr3 23430745 23430779 -204093799 + AT_rich Low_complexity Low_complexity 1 34 0 10708 137 43 14 chr3 23430784 23433826 -204090752 + L1MA1 LINE L1 3177 6294 -8 2143 87 0 14 chr3 23434757 23435043 -204089535 + AluSx SINE Alu 1 282 -30 210 37 0 0 chr3 23435046 23435073 -204089505 + (CATA)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr3 23435131 23435155 -204089423 + AT_rich Low_complexity Low_complexity 1 24 0 437 231 132 19 chr3 23435780 23435992 -204088586 + L1MC4 LINE L1 7807 8042 0 183 278 270 9 chr3 23439907 23440022 -204084556 - MIR SINE MIR -44 218 74 24 0 0 0 chr3 23440444 23440468 -204084110 + AT_rich Low_complexity Low_complexity 1 24 0 187 261 0 22 chr3 23440755 23440801 -204083777 + L2 LINE L2 3181 3225 -88 476 289 85 25 chr3 23441039 23441240 -204083338 + MIR SINE MIR 4 216 -46 * 506 258 46 62 chr3 23441221 23441415 -204083163 + MIR SINE MIR 6 196 -66 196 231 135 0 chr3 23441880 23441932 -204082646 - L2 LINE L2 -76 3237 3179 1072 257 123 20 chr3 23443045 23443442 -204081136 + MLT1J LTR MaLR 72 509 -2 222 308 96 0 chr3 23443793 23443897 -204080681 - L2 LINE L2 -3 3310 3197 876 343 70 24 chr3 23443962 23444310 -204080268 - L2 LINE L2 -409 2905 2530 2293 97 3 0 chr3 23444310 23444609 -204079969 + AluSg SINE Alu 1 300 -10 876 343 70 24 chr3 23444609 23444715 -204079863 - L2 LINE L2 -784 2530 2430 245 128 0 0 chr3 23447446 23447485 -204077093 - tRNA-Gly-GGA tRNA tRNA -36 39 1 2310 98 0 0 chr3 23447500 23447795 -204076783 - AluSx SINE Alu -17 295 1 622 340 81 10 chr3 23447920 23448326 -204076252 - MLT1L LTR MaLR -49 566 132 442 306 159 9 chr3 23448614 23448846 -204075732 + L3 LINE CR1 1116 1382 -195 368 328 87 6 chr3 23448938 23449121 -204075457 - MIR SINE MIR -45 217 20 184 272 191 55 chr3 23449760 23449995 -204074583 + L2 LINE L2 1837 2103 -1211 256 309 74 54 chr3 23450387 23450536 -204074042 + MLT1K LTR MaLR 157 308 -280 419 184 26 0 chr3 23450645 23450721 -204073857 + MLT1K LTR MaLR 509 586 -2 215 347 0 10 chr3 23450858 23450956 -204073622 + L2 LINE L2 2890 2986 -286 270 419 7 13 chr3 23451051 23451206 -204073372 - L2 LINE L2 -567 2747 2594 433 277 96 50 chr3 23451211 23451587 -204072991 + L1ME4a LINE L1 5536 5928 -193 182 321 62 25 chr3 23451743 23451824 -204072754 - MIR SINE MIR -66 142 59 1098 134 0 6 chr3 23452432 23452596 -204071982 - AluSg/x SINE Alu -16 296 134 22 70 0 0 chr3 23453341 23453384 -204071194 + AT_rich Low_complexity Low_complexity 1 43 0 1839 132 7 14 chr3 23453387 23453676 -204070902 + AluJb SINE Alu 13 299 -13 222 91 0 0 chr3 23454916 23454949 -204069629 + (CA)n Simple_repeat Simple_repeat 2 34 0 31 58 0 0 chr3 23455155 23455207 -204069371 + AT_rich Low_complexity Low_complexity 1 52 0 26 64 0 0 chr3 23455365 23455412 -204069166 + AT_rich Low_complexity Low_complexity 1 47 0 1595 188 35 3 chr3 23455599 23455886 -204068692 - AluJo SINE Alu -11 301 6 221 326 153 0 chr3 23456571 23456669 -204067909 - L2 LINE L2 -4 3309 3197 807 153 8 0 chr3 23457214 23457338 -204067240 + FLAM_C SINE Alu 8 132 -11 245 163 82 0 chr3 23457604 23457653 -204066925 - MER116 DNA Mariner -27 53 1 29 0 0 0 chr3 23457951 23457980 -204066598 + AT_rich Low_complexity Low_complexity 1 29 0 1160 249 79 14 chr3 23457995 23458412 -204066166 + L1M4 LINE L1 4060 4503 -1643 1235 190 75 51 chr3 23458419 23458531 -204066047 - MER44D DNA MER2_type -1882 609 501 1613 137 149 3 chr3 23458531 23458846 -204065732 + MER46B DNA MER2_type 1 236 0 1235 190 75 51 chr3 23458846 23459064 -204065514 - MER44D DNA MER2_type -1990 501 1 1395 236 55 14 chr3 23459064 23459289 -204065289 + L1M4 LINE L1 4514 4728 -1418 1837 188 0 0 chr3 23459289 23459587 -204064991 + AluJb SINE Alu 1 298 -14 1395 236 55 14 chr3 23459587 23459776 -204064802 + L1M4 LINE L1 4728 4945 -1201 276 219 98 24 chr3 23460103 23460185 -204064393 + MER5A DNA MER1_type 99 186 -3 247 259 0 0 chr3 23460486 23460540 -204064038 + (TATG)n Simple_repeat Simple_repeat 2 55 0 535 264 98 15 chr3 23460620 23460885 -204063693 + L1MC5 LINE L1 7290 7576 -385 21 71 0 0 chr3 23461031 23461073 -204063505 + AT_rich Low_complexity Low_complexity 1 42 0 1125 202 0 18 chr3 23461273 23461496 -204063082 - MER20 DNA MER1_type 0 219 1 2990 244 74 54 chr3 23461819 23463358 -204061220 + L1ME LINE L1 17 1524 -5120 1896 133 73 3 chr3 23463358 23463673 -204060905 - MER1B DNA MER1_type 0 337 1 2990 244 74 54 chr3 23463673 23464462 -204060116 + L1ME LINE L1 1524 2296 -4348 1620 167 49 3 chr3 23464462 23464749 -204059829 - AluJb SINE Alu -12 300 1 2990 244 74 54 chr3 23464749 23464928 -204059650 + L1ME LINE L1 2296 4924 -1720 228 303 0 40 chr3 23465415 23465514 -204059064 + MLT2E LTR ERVL 40 134 -494 311 268 162 35 chr3 23465773 23466001 -204058577 + L1ME LINE L1 5462 5718 -926 569 286 94 28 chr3 23466089 23466515 -204058063 + L1ME LINE L1 5836 6289 -379 452 189 0 0 chr3 23466536 23466626 -204057952 - L1PB4 LINE L1 -2 6154 6065 265 327 26 39 chr3 23467000 23467156 -204057422 - L2 LINE L2 -606 2708 2555 2763 123 41 16 chr3 23467261 23467747 -204056831 + L1MA8 LINE L1 5340 5837 -454 575 157 75 37 chr3 23467766 23467900 -204056678 - L1M3 LINE L1 -1141 5005 4867 * 1593 176 84 4 chr3 23467899 23468348 -204056230 + L1M3 LINE L1 5007 5480 -703 363 149 90 15 chr3 23468613 23468680 -204055898 + AluS SINE Alu 1 72 -227 551 45 0 0 chr3 23468843 23468909 -204055669 - AluSq/x SINE Alu -181 131 66 3825 200 170 31 chr3 23469326 23470588 -204053990 - Charlie1 DNA MER1_type -2 2759 7 1882 173 3 38 chr3 23470601 23470947 -204053631 + MER1B DNA MER1_type 4 337 0 2554 210 29 15 chr3 23470967 23471491 -204053087 + MER77 LTR ERV1 54 584 -21 962 161 5 57 chr3 23471709 23471901 -204052677 - MER20 DNA MER1_type -37 182 1 296 306 0 31 chr3 23472211 23472309 -204052269 + MER5B DNA MER1_type 2 96 -82 602 278 91 20 chr3 23472312 23472510 -204052068 - L2 LINE L2 -2 3311 3100 3042 168 71 13 chr3 23472775 23473377 -204051201 - L1PB4 LINE L1 -13 6143 5507 2972 88 8 5 chr3 23473377 23473776 -204050802 + MLT2A1 LTR ERVL 1 400 -44 238 113 56 28 chr3 23473777 23473848 -204050730 + (TA)n Simple_repeat Simple_repeat 1 73 0 329 20 122 0 chr3 23473859 23473908 -204050670 + MLT2A1 LTR ERVL 399 453 0 2705 164 93 17 chr3 23473908 23473986 -204050592 - L1PB4 LINE L1 -645 5511 5440 906 64 112 0 chr3 23473986 23474111 -204050467 + MER85 DNA T2_type 1 139 0 2705 164 93 17 chr3 23474111 23474788 -204049790 - L1PB4 LINE L1 -716 5440 4710 1719 154 0 0 chr3 23475207 23475466 -204049112 + AluSx SINE Alu 49 307 -5 316 224 116 99 chr3 23476111 23476343 -204048235 + L1MEc LINE L1 1708 1943 -4453 347 274 80 33 chr3 23476364 23476576 -204048002 + L1MEc LINE L1 1731 1952 -4444 4236 238 55 27 chr3 23476654 23477088 -204047490 + L1MEc LINE L1 2079 2499 -3716 2125 72 0 75 chr3 23477088 23477409 -204047169 + AluY SINE Alu 1 297 -14 4236 238 55 27 chr3 23477409 23478612 -204045966 + L1MEc LINE L1 2499 3761 -2454 2192 197 53 31 chr3 23478675 23478749 -204045829 + L1MB7 LINE L1 5575 5646 -538 2267 84 0 32 chr3 23478749 23479057 -204045521 + AluSq SINE Alu 1 298 -15 2192 197 53 31 chr3 23479057 23479570 -204045008 + L1MB7 LINE L1 5646 6175 -9 219 327 50 30 chr3 23479627 23479728 -204044850 + L3b LINE CR1 1286 1388 -195 8571 132 16 54 chr3 23479855 23481152 -204043426 + L1MA2 LINE L1 3656 4838 -1467 2217 101 10 3 chr3 23481152 23481450 -204043128 + AluSx SINE Alu 1 300 -12 8571 132 16 54 chr3 23481450 23482281 -204042297 + L1MA2 LINE L1 4838 5699 -606 217 200 42 33 chr3 23482297 23482417 -204042161 + (TTATA)n Simple_repeat Simple_repeat 5 125 0 3218 107 50 53 chr3 23482432 23483030 -204041548 + L1MA2 LINE L1 5709 6304 0 2530 152 31 0 chr3 23483282 23483697 -204040881 - MSTA LTR MaLR 0 428 1 21 0 0 0 chr3 23484057 23484078 -204040500 + AT_rich Low_complexity Low_complexity 1 21 0 2075 125 149 8 chr3 23485115 23485490 -204039088 - MSTA LTR MaLR 0 428 1 1600 173 184 11 chr3 23485952 23486316 -204038262 - MSTA LTR MaLR -1 427 1 2909 122 11 13 chr3 23486316 23486766 -204037812 - MSTA-int LTR MaLR 0 1580 1132 1039 263 86 41 chr3 23486910 23487329 -204037249 - MLT1J1 LTR MaLR -8 438 1 350 233 69 43 chr3 23487329 23487445 -204037133 - MER5A DNA MER1_type -40 149 31 269 281 74 66 chr3 23487339 23487460 -204037118 + MER5A DNA MER1_type 63 184 -5 * 525 322 163 36 chr3 23487753 23488331 -204036247 + L2 LINE L2 2262 2912 -402 250 371 16 8 chr3 23488434 23488558 -204036020 - L2 LINE L2 -999 2315 2191 1792 162 7 10 chr3 23488686 23488982 -204035596 + AluJo SINE Alu 1 295 -17 2437 196 143 4 chr3 23489000 23489692 -204034886 + L1MB8 LINE L1 3959 4746 -1400 844 292 27 95 chr3 23489692 23490250 -204034328 + MER34 LTR ERV1 1 520 -22 1424 172 7 24 chr3 23490280 23490498 -204034080 + L1MB8 LINE L1 4742 4962 -1184 189 0 0 0 chr3 23490498 23490519 -204034059 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 357 24 0 0 chr3 23490518 23490560 -204034018 + (GA)n Simple_repeat Simple_repeat 2 43 0 1424 172 7 24 chr3 23490519 23490631 -204033947 + L1MB8 LINE L1 4962 5026 -1120 748 225 146 36 chr3 23490640 23490893 -204033685 - MLT1C LTR MaLR 0 467 187 2481 157 86 48 chr3 23490905 23491428 -204033150 + MER21B LTR ERV1 320 862 -1 616 173 83 18 chr3 23491443 23491546 -204033032 + L1MB8 LINE L1 5338 5433 -745 1575 181 0 38 chr3 23491546 23491885 -204032693 + AluJb SINE Alu 3 330 0 616 173 83 18 chr3 23491885 23492513 -204032065 + L1MB8 LINE L1 5433 6176 -2 2580 68 0 0 chr3 23492846 23493153 -204031425 + AluY SINE Alu 2 308 -3 2547 63 0 0 chr3 23493759 23494062 -204030516 - AluY SINE Alu -8 303 1 2335 101 0 0 chr3 23495063 23495370 -204029208 + AluSc SINE Alu 2 308 -1 192 40 0 0 chr3 23495630 23495655 -204028923 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1710 156 40 6 chr3 23495914 23496240 -204028338 + L1MB7 LINE L1 5829 6165 -19 262 286 38 60 chr3 23496419 23496552 -204028026 + Charlie8 DNA MER1_type 83 212 -2205 2288 100 0 0 chr3 23497579 23497878 -204026700 - AluSx SINE Alu -13 299 1 813 192 126 0 chr3 23498344 23498526 -204026052 + MER3 DNA MER1_type 5 209 0 310 325 118 70 chr3 23499248 23499847 -204024731 + L1M2 LINE L1 841 1468 -5381 284 62 0 21 chr3 23499855 23499903 -204024675 + (CCG)n Simple_repeat Simple_repeat 1 47 0 342 324 111 56 chr3 23499926 23500232 -204024346 + L1M2 LINE L1 462 784 -6065 * 430 313 163 54 chr3 23500211 23500659 -204023919 - L1M2 LINE L1 -5596 1253 757 186 43 0 0 chr3 23501326 23501349 -204023229 + (A)n Simple_repeat Simple_repeat 1 23 0 223 235 39 0 chr3 23502203 23502254 -204022324 + MIR SINE MIR 88 140 -122 8058 115 21 28 chr3 23502375 23503621 -204020957 - HSMAR2 DNA Mariner -2 1300 62 1749 182 27 0 chr3 23503621 23503917 -204020661 + AluSx SINE Alu 1 304 -8 8058 115 21 28 chr3 23503917 23503979 -204020599 - HSMAR2 DNA Mariner -1240 62 1 2288 121 0 0 chr3 23504025 23504331 -204020247 + AluSx SINE Alu 1 306 -6 295 253 92 0 chr3 23504891 23504978 -204019600 - MIR SINE MIR -110 152 58 1625 207 7 7 chr3 23505111 23505415 -204019163 + AluJo SINE Alu 7 310 -2 539 308 78 16 chr3 23505421 23505863 -204018715 + L1MEd LINE L1 1158 1713 -863 481 357 127 18 chr3 23506214 23506601 -204017977 - LTR67 LTR ERVL -93 464 36 333 336 77 37 chr3 23506639 23507216 -204017362 + L1MEd LINE L1 2042 2602 -3613 1600 140 22 0 chr3 23507224 23507452 -204017126 + AluSx SINE Alu 3 235 -77 26 30 0 0 chr3 23508107 23508140 -204016438 + AT_rich Low_complexity Low_complexity 1 33 0 806 185 205 21 chr3 23508147 23508507 -204016071 + L1MEc LINE L1 2176 2560 -3655 4565 175 46 39 chr3 23508533 23509977 -204014601 + L1MA9 LINE L1 4374 5825 -487 2021 131 6 19 chr3 23509977 23510290 -204014288 + AluSg SINE Alu 1 309 -1 4565 175 46 39 chr3 23510290 23510744 -204013834 + L1MA9 LINE L1 5825 6274 -38 2359 214 119 13 chr3 23510731 23511446 -204013132 + L1MEc LINE L1 2582 3372 -2843 * 2742 290 112 31 chr3 23511488 23511996 -204012582 - L2 LINE L2 -1217 2097 1631 1805 212 174 2 chr3 23511996 23512439 -204012139 - LTR40a LTR ERVL 0 519 1 2742 290 112 31 chr3 23512439 23513370 -204011208 - L2 LINE L2 -1683 1631 542 23 0 0 0 chr3 23513379 23513402 -204011176 + AT_rich Low_complexity Low_complexity 1 23 0 501 296 66 36 chr3 23513516 23513712 -204010866 + MIR3 SINE MIR 4 205 -3 195 338 14 0 chr3 23514565 23514639 -204009939 + L2 LINE L2 3192 3266 -47 252 328 106 6 chr3 23514658 23514824 -204009754 - L2 LINE L2 -245 3068 2873 211 219 0 62 chr3 23514882 23514946 -204009632 + CT-rich Low_complexity Low_complexity 4 63 0 236 353 147 0 chr3 23514946 23515136 -204009442 - L2 LINE L2 -567 2747 2530 303 125 0 0 chr3 23515157 23515205 -204009373 + AluJ/FLAM SINE Alu 37 84 -218 910 241 106 20 chr3 23515269 23515617 -204008961 - L2 LINE L2 -807 2507 2130 278 311 143 17 chr3 23516145 23516264 -204008314 + L2 LINE L2 3180 3313 0 1007 265 123 44 chr3 23516507 23517058 -204007520 + MLT1G1 LTR MaLR 1 595 0 1106 292 21 3 chr3 23517127 23517456 -204007122 + L1MC4a LINE L1 5580 5914 -1894 2247 105 0 7 chr3 23517470 23517775 -204006803 - AluSc SINE Alu -6 303 1 2287 104 7 3 chr3 23517819 23518126 -204006452 + AluSx SINE Alu 1 308 -4 201 94 0 0 chr3 23518258 23518290 -204006288 + (CAG)n Simple_repeat Simple_repeat 3 34 0 245 29 29 0 chr3 23520596 23520630 -204003948 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1375 219 63 27 chr3 23520638 23521112 -204003466 + L1MC5 LINE L1 7411 7901 -60 1278 176 112 46 chr3 23521114 23521386 -204003192 + MER2 DNA MER2_type 2 300 -45 1064 91 24 18 chr3 23521386 23521551 -204003027 - L1MA5 LINE L1 0 6300 6135 1278 176 112 46 chr3 23521551 23521601 -204002977 + MER2 DNA MER2_type 300 345 0 1903 164 3 26 chr3 23521997 23522308 -204002270 - AluJo SINE Alu -8 304 1 882 228 27 0 chr3 23522701 23522885 -204001693 + MER5A DNA MER1_type 1 189 0 2017 121 17 3 chr3 23523301 23523598 -204000980 + AluSx SINE Alu 4 304 -8 320 131 82 0 chr3 23523631 23523692 -204000886 + Charlie5 DNA MER1_type 2498 2563 -49 664 125 50 0 chr3 23524090 23524210 -204000368 - L1MA3 LINE L1 0 6305 6180 477 338 13 6 chr3 23524543 23524700 -203999878 - MER117 DNA MER1_type 0 197 40 635 228 73 49 chr3 23525078 23525316 -203999262 - MLT1J LTR MaLR 0 511 338 1753 153 115 24 chr3 23525388 23525468 -203999110 + MLT1D LTR MaLR 1 72 -433 1941 124 78 12 chr3 23525468 23525799 -203998779 - THE1A LTR MaLR -2 353 1 1753 153 115 24 chr3 23525799 23526057 -203998521 + MLT1D LTR MaLR 72 370 -135 3188 176 0 19 chr3 23526073 23526589 -203997989 + MLT2B3 LTR ERVL 3 508 -46 387 89 0 0 chr3 23526593 23526649 -203997929 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 357 119 0 0 chr3 23526650 23526703 -203997875 + MLT2B2 LTR ERVL 410 463 -47 240 111 0 0 chr3 23526703 23526739 -203997839 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 340 45 0 0 chr3 23526740 23526784 -203997794 + MLT2B2 LTR ERVL 410 453 -62 216 67 0 0 chr3 23526784 23526814 -203997764 + (TCTA)n Simple_repeat Simple_repeat 3 32 0 556 99 55 22 chr3 23526815 23526864 -203997714 + MLT2B3 LTR ERVL 460 506 -48 657 69 0 0 chr3 23526864 23526951 -203997627 + (TCCA)n Simple_repeat Simple_repeat 3 89 0 556 99 55 22 chr3 23526951 23526992 -203997586 + MLT2B3 LTR ERVL 506 553 -1 4589 195 38 18 chr3 23526993 23528333 -203996245 + MLT1A1-int LTR MaLR 1 1370 -1 2158 169 31 0 chr3 23528334 23528688 -203995890 + MLT1A1 LTR MaLR 1 365 0 520 158 21 0 chr3 23528688 23528783 -203995795 + MLT1D LTR MaLR 409 505 0 345 317 43 12 chr3 23528838 23528999 -203995579 - MLT1J LTR MaLR -343 168 3 326 165 13 0 chr3 23529360 23529439 -203995139 + CT-rich Low_complexity Low_complexity 2 81 0 251 91 0 23 chr3 23529441 23529485 -203995093 + (TG)n Simple_repeat Simple_repeat 2 44 0 2546 162 115 9 chr3 23529489 23530035 -203994543 + Tigger6 DNA MER2_type 986 1597 0 1264 120 27 0 chr3 23530555 23530738 -203993840 + MSTB1 LTR MaLR 1 188 -244 980 189 12 0 chr3 23530738 23530902 -203993676 + FAM SINE Alu 1 166 -19 1003 191 55 34 chr3 23530902 23531137 -203993441 + MSTB1 LTR MaLR 193 432 0 346 327 24 38 chr3 23531580 23531791 -203992787 - MLT1L LTR MaLR -407 208 1 2389 105 3 0 chr3 23531886 23532192 -203992386 + AluSc SINE Alu 1 307 -2 527 238 33 0 chr3 23533369 23533491 -203991087 + MER5B DNA MER1_type 1 126 -52 2221 113 0 0 chr3 23533678 23533969 -203990609 - AluSx SINE Alu -21 291 1 182 37 37 0 chr3 23535802 23535829 -203988749 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1691 192 3 0 chr3 23535833 23536125 -203988453 - AluJo SINE Alu -19 293 1 2105 108 4 7 chr3 23536155 23536464 -203988114 + AluSg SINE Alu 3 310 0 278 182 0 76 chr3 23536643 23536709 -203987869 - MER3 DNA MER1_type -5 204 144 2220 213 34 45 chr3 23537086 23537622 -203986956 + MLT1E LTR MaLR 62 591 -2 360 262 74 90 chr3 23538140 23538384 -203986194 + LTR16A1 LTR ERVL 218 457 0 2055 132 7 0 chr3 23539131 23539432 -203985146 - AluSx SINE Alu 0 304 2 885 237 171 38 chr3 23539506 23539947 -203984631 - MLT1G1 LTR MaLR 0 595 20 1950 151 0 10 chr3 23540223 23540527 -203984051 - AluJb SINE Alu -11 301 1 1658 158 34 34 chr3 23540531 23540828 -203983750 - AluJb SINE Alu -15 297 1 845 158 25 54 chr3 23540843 23541011 -203983567 - Charlie5 DNA MER1_type -203 2421 2258 1952 91 36 39 chr3 23541011 23541319 -203983259 + AluSx SINE Alu 1 307 -5 845 158 25 54 chr3 23541319 23541353 -203983225 - Charlie5 DNA MER1_type -366 2258 2225 356 151 279 0 chr3 23541335 23541421 -203983157 - Charlie5 DNA MER1_type -2485 127 18 * 855 164 28 68 chr3 23541423 23541600 -203982978 - FRAM SINE Alu -14 162 1 1911 139 11 4 chr3 23541608 23541888 -203982690 - AluSx SINE Alu -30 282 1 207 0 0 0 chr3 23541933 23541956 -203982622 + (CA)n Simple_repeat Simple_repeat 1 23 0 250 182 0 0 chr3 23541961 23542005 -203982573 + MLT2F LTR ERVL 620 663 0 934 98 8 0 chr3 23542380 23542502 -203982076 - AluSq/x SINE Alu -190 123 1 37 53 0 13 chr3 23543579 23543615 -203980963 + AT_rich Low_complexity Low_complexity 1 36 -39 1902 154 10 16 chr3 23543615 23543921 -203980657 - AluJb SINE Alu -8 304 1 37 53 0 13 chr3 23543921 23543960 -203980618 + AT_rich Low_complexity Low_complexity 36 75 0 2127 131 0 0 chr3 23544013 23544304 -203980274 - AluSx SINE Alu -21 291 1 1688 156 34 30 chr3 23544308 23544603 -203979975 - AluJb SINE Alu -15 297 2 327 159 0 48 chr3 23544603 23544666 -203979912 - AluJo SINE Alu -159 143 84 1052 203 43 23 chr3 23544867 23545123 -203979455 - LTR16A1 LTR ERVL -19 438 178 208 158 0 88 chr3 23545588 23545645 -203978933 - L2 LINE L2 -1 3312 3261 366 206 0 14 chr3 23545648 23545721 -203978857 + MARNA DNA Mariner 395 466 -120 227 211 282 0 chr3 23545994 23546065 -203978513 - MIR SINE MIR -16 246 156 620 241 146 0 chr3 23546086 23546244 -203978334 - MER5A DNA MER1_type 0 189 9 425 229 59 8 chr3 23546921 23547039 -203977539 - MIR SINE MIR -74 188 65 632 335 70 0 chr3 23547041 23547271 -203977307 - MIR SINE MIR -10 252 7 612 261 18 45 chr3 23547915 23548137 -203976441 - LTR33 LTR ERVL -305 216 1 211 171 98 0 chr3 23548931 23548972 -203975606 + MIR SINE MIR 218 262 0 44647 42 4 0 chr3 23549126 23555258 -203969320 - L1PA4 LINE L1 0 6155 1 1900 165 3 0 chr3 23555258 23555561 -203969017 - AluSx SINE Alu -8 304 1 655 205 56 6 chr3 23555591 23555752 -203968826 + L1MC5 LINE L1 7257 7425 -536 933 213 87 42 chr3 23555755 23555836 -203968742 + MLT1B LTR MaLR 3 79 -311 1936 125 125 57 chr3 23555836 23556237 -203968341 - MSTA LTR MaLR 0 428 1 933 213 87 42 chr3 23556237 23556555 -203968023 + MLT1B LTR MaLR 79 358 -32 1518 171 16 85 chr3 23556557 23556645 -203967933 - MER2 DNA MER2_type -2 343 251 1626 140 29 59 chr3 23556645 23556779 -203967799 + AluJo SINE Alu 1 137 -175 2358 110 0 0 chr3 23556779 23557079 -203967499 + AluSx SINE Alu 1 300 -12 1626 140 29 59 chr3 23557079 23557251 -203967327 + AluJo SINE Alu 137 298 -14 1518 171 16 85 chr3 23557251 23557525 -203967053 - MER2 DNA MER2_type -94 251 6 246 114 0 0 chr3 23557529 23557564 -203967014 + MLT1B LTR MaLR 356 390 0 2265 55 0 24 chr3 23557616 23557930 -203966648 + AluY SINE Alu 7 311 0 330 26 0 0 chr3 23557952 23557991 -203966587 + (TG)n Simple_repeat Simple_repeat 1 39 0 777 174 90 110 chr3 23558015 23558314 -203966264 + L1MC5 LINE L1 7483 7767 -194 2189 114 62 0 chr3 23558314 23558666 -203965912 + L1MA5 LINE L1 5925 6298 -2 777 174 90 110 chr3 23558666 23558837 -203965741 + L1MC5 LINE L1 7767 7940 -21 549 304 89 57 chr3 23559003 23559560 -203965018 - L2 LINE L2 -3 3310 2713 588 264 158 29 chr3 23559768 23560202 -203964376 - MLT1G LTR MaLR 0 590 64 1969 210 114 62 chr3 23560333 23561010 -203963568 - MER50 LTR ERV1 -5 729 18 373 304 133 15 chr3 23562255 23562390 -203962188 + L2 LINE L2 3117 3267 -5 1095 190 33 5 chr3 23562411 23562595 -203961983 + MER5A DNA MER1_type 1 189 0 21 36 0 0 chr3 23562843 23562871 -203961707 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr3 23562897 23562926 -203961652 + AT_rich Low_complexity Low_complexity 1 29 0 264 271 12 35 chr3 23563804 23563889 -203960689 - Charlie8 DNA MER1_type -2309 108 26 2010 132 0 7 chr3 23564264 23564551 -203960027 + AluJb SINE Alu 3 287 -25 2289 96 7 0 chr3 23564809 23565102 -203959476 + AluSp SINE Alu 1 295 -18 2303 108 0 0 chr3 23565219 23565515 -203959063 + AluSg SINE Alu 1 296 -14 560 226 0 73 chr3 23565923 23566060 -203958518 - MIR SINE MIR -122 140 14 531 330 54 8 chr3 23566326 23566565 -203958013 + MIR SINE MIR 1 250 -12 1909 168 0 3 chr3 23566573 23566871 -203957707 + AluSx SINE Alu 1 297 -15 586 309 149 19 chr3 23566993 23567497 -203957081 - L2 LINE L2 0 3313 2722 214 286 65 13 chr3 23567497 23567574 -203957004 - L2 LINE L2 -719 2595 2515 226 293 300 20 chr3 23567747 23567897 -203956681 + MIR SINE MIR 45 236 -26 304 255 69 20 chr3 23568362 23568464 -203956114 - MIR SINE MIR 0 262 156 843 319 44 9 chr3 23568583 23569038 -203955540 + L1M4 LINE L1 4796 5266 -880 31 20 0 20 chr3 23569038 23569068 -203955510 + AT_rich Low_complexity Low_complexity 1 31 -17 2277 103 0 10 chr3 23569068 23569370 -203955208 - AluSx SINE Alu -13 299 1 31 20 0 20 chr3 23569370 23569388 -203955190 + AT_rich Low_complexity Low_complexity 31 48 0 6261 143 11 7 chr3 23569510 23571023 -203953555 - L1PA15 LINE L1 -21 6144 4631 567 256 83 119 chr3 23571860 23572449 -203952129 + MLT1K LTR MaLR 21 588 0 1632 198 0 0 chr3 23572689 23572962 -203951616 - AluJb SINE Alu -39 273 1 1515 200 72 9 chr3 23572962 23573282 -203951296 - MSTD LTR MaLR -56 340 1 276 340 7 42 chr3 23573899 23574043 -203950535 + MER91A DNA MER1_type 21 159 -37 258 95 0 0 chr3 23574275 23574317 -203950261 + (TG)n Simple_repeat Simple_repeat 1 42 0 234 105 0 0 chr3 23574317 23574355 -203950223 + (GA)n Simple_repeat Simple_repeat 2 39 0 477 0 0 0 chr3 23574357 23574410 -203950168 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 460 212 288 49 chr3 23574536 23574800 -203949778 - MLT1H LTR MaLR -2 547 221 922 211 93 26 chr3 23575052 23575322 -203949256 - MER33 DNA MER1_type -35 289 2 489 287 22 7 chr3 23575350 23575486 -203949092 - MIR SINE MIR -123 139 2 216 213 21 0 chr3 23576080 23576127 -203948451 + L2 LINE L2 3225 3272 0 306 159 0 0 chr3 23576587 23576656 -203947922 + CT-rich Low_complexity Low_complexity 2 70 0 2353 69 14 0 chr3 23576849 23577139 -203947439 - AluY SINE Alu -17 294 1 27 49 0 0 chr3 23577298 23577339 -203947239 + AT_rich Low_complexity Low_complexity 1 41 0 5625 78 11 13 chr3 23577341 23578058 -203946520 - L1PB1 LINE L1 0 6151 5436 1921 220 7 2 chr3 23578066 23578511 -203946067 - L1PB1 LINE L1 -783 5363 4917 264 394 6 28 chr3 23579081 23579261 -203945317 - L2 LINE L2 -232 3040 2865 198 396 68 9 chr3 23579486 23579807 -203944771 - L2 LINE L2 -744 2570 2231 312 274 232 18 chr3 23579828 23579992 -203944586 + MLT1L LTR MaLR 42 240 -375 295 281 99 26 chr3 23580043 23580235 -203944343 + MLT1J LTR MaLR 217 422 -89 875 209 155 92 chr3 23580547 23581006 -203943572 - MLT1G1 LTR MaLR 0 595 108 3910 123 9 16 chr3 23581104 23581281 -203943297 + L1MB3 LINE L1 5607 5784 -399 1973 151 44 44 chr3 23581281 23581646 -203942932 - MLT1A1 LTR MaLR 0 365 1 3910 123 9 16 chr3 23581646 23582045 -203942533 + L1MB3 LINE L1 5784 6179 -4 23 33 0 0 chr3 23582045 23582075 -203942503 + AT_rich Low_complexity Low_complexity 1 30 0 2237 117 0 0 chr3 23582080 23582380 -203942198 - AluSx SINE Alu -12 300 1 24 0 0 0 chr3 23582401 23582425 -203942153 + AT_rich Low_complexity Low_complexity 1 24 0 608 241 163 0 chr3 23582482 23582623 -203941955 + MER5A DNA MER1_type 26 189 0 2237 219 68 11 chr3 23583101 23583675 -203940903 - L1ME3A LINE L1 0 6170 5564 9572 180 37 17 chr3 23584974 23586050 -203938528 - L1P4 LINE L1 -661 5505 4452 189 0 0 0 chr3 23586050 23586071 -203938507 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 9572 180 37 17 chr3 23586071 23587223 -203937355 - L1P4 LINE L1 -1714 4452 3240 1327 121 16 0 chr3 23587234 23587424 -203937154 + AluSq SINE Alu 113 305 -8 247 248 126 65 chr3 23587539 23587728 -203936850 + MLT1J LTR MaLR 3 175 -271 5966 138 33 13 chr3 23587737 23588290 -203936288 - L1MC1 LINE L1 -19 6314 5774 2420 127 30 22 chr3 23588290 23588651 -203935927 - THE1B LTR MaLR 0 364 1 12969 78 6 1 chr3 23588653 23590222 -203934356 - THE1B-int LTR MaLR -2 1578 1 2463 113 30 30 chr3 23590222 23590586 -203933992 - THE1B LTR MaLR 0 364 1 5966 138 33 13 chr3 23590586 23591015 -203933563 - L1MC1 LINE L1 -558 5775 5308 1113 183 0 0 chr3 23591016 23591202 -203933376 - AluJb SINE Alu -12 300 115 198 396 68 9 chr3 23591449 23591770 -203932808 - L2 LINE L2 -744 2570 2231 346 251 246 17 chr3 23591791 23591970 -203932608 + MLT1L LTR MaLR 42 261 -354 413 286 117 23 chr3 23592006 23592272 -203932306 + MLT1J LTR MaLR 219 509 -2 21 0 0 0 chr3 23593421 23593442 -203931136 + AT_rich Low_complexity Low_complexity 1 21 0 240 35 0 0 chr3 23593712 23593741 -203930837 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 1180 114 5 22 chr3 23593756 23593940 -203930638 - AluSg/x SINE Alu 0 309 129 775 158 0 9 chr3 23594088 23594202 -203930376 - AluSq/x SINE Alu -199 114 2 2161 119 0 3 chr3 23594212 23594514 -203930064 - AluSc SINE Alu -8 301 1 232 247 82 41 chr3 23594534 23594631 -203929947 - L1ME LINE L1 -297 5873 5773 626 178 180 29 chr3 23594825 23595076 -203929502 - MLT1H1 LTR MaLR 0 555 279 282 225 25 100 chr3 23595212 23595332 -203929246 - MER103 DNA DNA -1 165 55 331 265 45 113 chr3 23595835 23596029 -203928549 - L1ME4a LINE L1 -115 6006 5855 1651 150 24 31 chr3 23596029 23596316 -203928262 + AluJo SINE Alu 11 295 -17 331 265 45 113 chr3 23596316 23596547 -203928031 - L1ME4a LINE L1 -266 5855 5610 259 353 12 0 chr3 23596749 23596834 -203927744 + L2 LINE L2 3102 3187 -85 458 244 282 24 chr3 23596859 23597146 -203927432 - L2 LINE L2 -4 3309 2949 1228 255 73 0 chr3 23597269 23597598 -203926980 - LTR16A LTR ERVL -9 441 89 280 154 39 0 chr3 23597600 23597652 -203926926 + LTR50 LTR ERVL 561 614 -181 606 262 99 44 chr3 23597862 23598156 -203926422 + LTR33A LTR ERVL 2 311 -212 385 284 103 4 chr3 23598175 23598539 -203926039 + LTR16A LTR ERVL 17 450 0 * 652 199 78 6 chr3 23598539 23598703 -203925875 + LTR33A LTR ERVL 320 495 -28 6610 159 14 3 chr3 23598704 23600451 -203924127 + L1P5 LINE L1 4020 5780 -371 1194 63 0 0 chr3 23600451 23600590 -203923988 + L1PB1 LINE L1 6009 6150 -1 229 214 0 0 chr3 23600594 23600636 -203923942 + LTR33A LTR ERVL 482 523 0 24 0 0 0 chr3 23600715 23600739 -203923839 + AT_rich Low_complexity Low_complexity 1 24 0 1051 209 0 0 chr3 23600765 23600942 -203923636 - MER8 DNA MER2_type -62 177 1 3112 157 70 67 chr3 23601005 23601617 -203922961 - LTR18B LTR ERVL 0 614 1 398 206 10 10 chr3 23601868 23601965 -203922613 + MER96 DNA MER1_type? 1 97 -78 823 92 92 46 chr3 23601995 23602126 -203922452 + FRAM SINE Alu 33 169 -7 1234 199 170 26 chr3 23602281 23602780 -203921798 - LTR50 LTR ERVL -104 691 30 322 215 21 43 chr3 23602779 23602872 -203921706 - MLT1E LTR MaLR -502 91 1 * 2229 102 0 3 chr3 23603620 23603913 -203920665 + AluSc SINE Alu 1 292 -17 341 90 0 90 chr3 23604110 23604177 -203920401 - MER53 DNA DNA 0 189 129 * 734 180 30 6 chr3 23604154 23604321 -203920257 + MER53 DNA DNA 7 177 -12 * 876 159 29 0 chr3 23604171 23604341 -203920237 - MER53 DNA DNA -12 177 3 496 152 0 0 chr3 23605602 23605681 -203918897 - Alu SINE Alu -9 301 223 202 315 82 55 chr3 23605708 23605854 -203918724 + L2 LINE L2 2943 3092 -180 2176 131 66 102 chr3 23606466 23606538 -203918040 - MSTB LTR MaLR 0 426 353 2056 121 4 4 chr3 23606538 23606819 -203917759 + AluSx SINE Alu 1 281 -31 2176 131 66 102 chr3 23606819 23607188 -203917390 - MSTB LTR MaLR -73 353 1 1631 214 98 109 chr3 23607669 23608488 -203916090 - Charlie2 DNA MER1_type -4 2858 2052 2075 129 7 0 chr3 23608488 23608782 -203915796 + AluSx SINE Alu 1 296 -16 1631 214 98 109 chr3 23608782 23608977 -203915601 - Charlie2 DNA MER1_type -810 2052 1856 1252 185 126 47 chr3 23609009 23609415 -203915163 - LTR56 LTR ERV1 0 445 8 971 190 84 18 chr3 23609419 23609645 -203914933 - Charlie2 DNA MER1_type -2465 317 77 443 181 53 0 chr3 23609691 23609785 -203914793 + MER5A DNA MER1_type 14 112 -77 181 288 163 0 chr3 23610685 23610765 -203913813 + MIR SINE MIR 100 192 -70 1275 138 11 5 chr3 23611208 23611396 -203913182 + MER5A DNA MER1_type 1 189 0 877 150 0 8 chr3 23611687 23611820 -203912758 + AluJo SINE Alu 5 136 -176 255 264 136 0 chr3 23612589 23612699 -203911879 - MIR3 SINE MIR -23 185 61 320 299 11 0 chr3 23612718 23612805 -203911773 - MIR3 SINE MIR -112 96 9 849 211 47 6 chr3 23612930 23613101 -203911477 + MER5B DNA MER1_type 1 178 0 2175 96 7 0 chr3 23613195 23613496 -203911082 - AluSp SINE Alu 0 303 1 287 259 0 0 chr3 23614126 23614180 -203910398 - L2 LINE L2 -10 3303 3250 524 131 12 36 chr3 23614903 23614987 -203909591 + FLAM_A SINE Alu 48 129 -13 2361 91 3 10 chr3 23614989 23615296 -203909282 + AluSx SINE Alu 1 305 -7 839 246 6 62 chr3 23615691 23615788 -203908790 + L1MC5 LINE L1 7611 7712 -249 1542 163 91 61 chr3 23615788 23616163 -203908415 + MLT1B LTR MaLR 1 386 -4 839 246 6 62 chr3 23616163 23616390 -203908188 + L1MC5 LINE L1 7712 7917 -44 22 0 0 0 chr3 23616523 23616545 -203908033 + AT_rich Low_complexity Low_complexity 1 22 0 586 271 83 48 chr3 23616635 23616864 -203907714 - MIR SINE MIR -6 256 20 1040 275 56 51 chr3 23617395 23617843 -203906735 + L2 LINE L2 2860 3309 -4 266 291 89 0 chr3 23617934 23618013 -203906565 - L2 LINE L2 -204 3068 2983 277 146 55 0 chr3 23618016 23618071 -203906507 + MLT1D LTR MaLR 1 58 -447 2313 123 27 30 chr3 23618082 23618435 -203906143 - THE1C LTR MaLR 0 375 22 6823 60 8 42 chr3 23618435 23619290 -203905288 - LTR12 LTR ERV1 0 826 1 2313 123 27 30 chr3 23619290 23619309 -203905269 - THE1C LTR MaLR -353 22 4 2043 178 31 60 chr3 23619309 23619753 -203904825 + MLT1D LTR MaLR 75 505 0 199 350 104 11 chr3 23619756 23619939 -203904639 - L2 LINE L2 -339 2975 2776 1410 277 40 3 chr3 23619990 23620369 -203904209 + LTR16A LTR ERVL 54 446 -4 244 301 86 0 chr3 23620456 23620549 -203904029 - L2 LINE L2 -644 2670 2570 3218 122 33 2 chr3 23620635 23621272 -203903306 + L1MA8 LINE L1 5111 5768 -523 13190 111 12 14 chr3 23621273 23622257 -203902321 + Tigger1 DNA MER2_type 486 1470 -948 2284 94 0 38 chr3 23622257 23622575 -203902003 + AluY SINE Alu 1 306 -5 13190 111 12 14 chr3 23622575 23623075 -203901503 + Tigger1 DNA MER2_type 1470 1969 -449 2293 102 7 0 chr3 23623075 23623378 -203901200 + AluY SINE Alu 1 305 -6 13190 111 12 14 chr3 23623378 23623704 -203900874 + Tigger1 DNA MER2_type 1969 2297 -121 354 45 0 0 chr3 23623704 23623748 -203900830 + (TA)n Simple_repeat Simple_repeat 1 44 0 13190 111 12 14 chr3 23623748 23623868 -203900710 + Tigger1 DNA MER2_type 2297 2416 -2 962 159 34 0 chr3 23623868 23624044 -203900534 + L1MA8 LINE L1 6106 6287 -4 353 227 151 41 chr3 23624218 23624319 -203900259 - L3 LINE CR1 -68 1509 1421 2855 99 11 8 chr3 23624319 23624691 -203899887 + THE1C LTR MaLR 1 373 -2 353 227 151 41 chr3 23624691 23624761 -203899817 - L3 LINE CR1 -156 1421 1319 540 300 111 37 chr3 23624773 23624949 -203899629 + MIR SINE MIR 2 164 -98 2464 51 7 3 chr3 23624949 23625245 -203899333 + AluY SINE Alu 1 297 -14 2288 108 3 0 chr3 23625251 23625548 -203899030 + AluSg SINE Alu 1 298 -12 540 300 111 37 chr3 23625548 23625607 -203898971 + MIR SINE MIR 168 262 0 789 212 58 32 chr3 23626517 23626706 -203897872 + MER63B DNA MER1_type 1 194 -242 207 88 29 0 chr3 23626721 23626755 -203897823 + (CTCA)n Simple_repeat Simple_repeat 1 35 0 269 200 292 0 chr3 23626758 23626823 -203897755 - L2 LINE L2 -1 3271 3188 2339 244 66 47 chr3 23626930 23627721 -203896857 + L2 LINE L2 1925 2730 -584 2332 69 0 44 chr3 23627827 23628146 -203896432 - AluY SINE Alu -6 305 1 449 113 21 124 chr3 23628358 23628394 -203896184 - L1ME1 LINE L1 -8 6158 6120 1620 173 95 0 chr3 23628394 23628678 -203895900 - AluJb SINE Alu -1 311 1 449 113 21 124 chr3 23628678 23628738 -203895840 - L1ME1 LINE L1 -46 6120 6072 3524 107 95 38 chr3 23628885 23629427 -203895151 + LTR24C LTR ERV1 1 582 -53 1881 139 0 7 chr3 23629427 23629700 -203894878 - AluSx SINE Alu -21 291 21 3524 107 95 38 chr3 23629700 23629756 -203894822 + LTR24C LTR ERV1 582 633 -2 1728 186 34 33 chr3 23629759 23630176 -203894402 + MLT2B1 LTR ERVL 1 414 0 45 79 0 0 chr3 23630553 23630654 -203893924 + AT_rich Low_complexity Low_complexity 1 101 0 265 282 154 18 chr3 23630730 23630840 -203893738 + MIR3 SINE MIR 3 127 -81 459 302 121 0 chr3 23630841 23630990 -203893588 - MER96 DNA MER1_type? -3 172 6 275 303 13 0 chr3 23630995 23631071 -203893507 + MIR3 SINE MIR 120 196 -12 22 0 0 0 chr3 23631462 23631484 -203893094 + AT_rich Low_complexity Low_complexity 1 22 0 1816 171 53 11 chr3 23631511 23631867 -203892711 - MER63 DNA MER1_type 0 1061 691 2462 195 14 12 chr3 23632334 23632995 -203891583 - L1MCa LINE L1 -917 5509 4737 1845 138 26 59 chr3 23633023 23633480 -203891098 + Tigger5 DNA MER2_type 8 2323 0 5102 241 82 59 chr3 23633480 23634557 -203890021 - L1MCa LINE L1 -1710 4716 3665 1591 174 89 0 chr3 23634557 23634839 -203889739 - AluJo SINE Alu -5 307 1 5102 241 82 59 chr3 23634839 23635663 -203888915 - L1MCa LINE L1 -2761 3665 2861 2224 97 0 32 chr3 23635663 23635972 -203888606 - AluY SINE Alu -12 299 1 5102 241 82 59 chr3 23635972 23636962 -203887616 - L1MCa LINE L1 -3565 2861 1895 189 0 0 0 chr3 23636962 23636983 -203887595 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 5102 241 82 59 chr3 23636983 23638189 -203886389 - L1MCa LINE L1 -4531 1895 456 5240 57 3 13 chr3 23638189 23638824 -203885754 - SVA Other Other 0 1386 758 5102 241 82 59 chr3 23638824 23639248 -203885330 - L1MCa LINE L1 -5970 456 43 509 250 6 76 chr3 23639385 23639557 -203885021 + MLT1J1 LTR MaLR 284 443 -3 283 241 34 24 chr3 23639859 23639960 -203884618 - MLT1J LTR MaLR -13 602 398 246 253 98 98 chr3 23640031 23640256 -203884322 - MLT1L LTR MaLR -221 394 170 959 245 91 60 chr3 23641177 23641528 -203883050 + LTR16C LTR ERVL 70 431 -60 307 209 15 0 chr3 23641740 23641807 -203882771 + LTR16C LTR ERVL 420 487 -4 201 108 0 0 chr3 23641848 23641885 -203882693 + (T)n Simple_repeat Simple_repeat 1 37 0 2156 111 62 108 chr3 23642240 23642710 -203881868 + LTR7 LTR ERV1 1 448 -2 2890 153 40 9 chr3 23642887 23643338 -203881240 - MLT1C LTR MaLR -2 465 1 749 283 22 5 chr3 23643353 23643537 -203881041 + MIR SINE MIR 3 189 -73 1679 153 3 28 chr3 23644286 23644592 -203879986 + AluJo SINE Alu 10 308 0 300 247 95 71 chr3 23645462 23645633 -203878945 - MLT1H LTR MaLR -13 536 439 219 267 30 8 chr3 23645825 23645956 -203878622 + (TA)n Simple_repeat Simple_repeat 2 135 0 4025 186 50 39 chr3 23646962 23647855 -203876723 - L1MB7 LINE L1 -8 6674 5455 2091 121 51 75 chr3 23647855 23648030 -203876548 - THE1B LTR MaLR 0 364 186 2265 121 0 3 chr3 23648030 23648344 -203876234 + AluSq SINE Alu 1 313 0 2091 121 51 75 chr3 23648344 23648541 -203876037 - THE1B LTR MaLR -178 186 1 4025 186 50 39 chr3 23648541 23648794 -203875784 - L1MB7 LINE L1 -1227 5455 5206 1548 218 32 50 chr3 23648799 23649176 -203875402 - L1MB7 LINE L1 -6156 386 17 869 230 22 92 chr3 23649758 23649930 -203874648 + MLT1H LTR MaLR 12 154 -395 2365 201 18 83 chr3 23649930 23650483 -203874095 - LTR40a LTR ERVL -2 517 1 869 230 22 92 chr3 23650483 23650627 -203873951 + MLT1H LTR MaLR 154 306 -243 2101 125 0 22 chr3 23650881 23651200 -203873378 + AluSx SINE Alu 1 312 0 1432 181 14 55 chr3 23651211 23651339 -203873239 + AluJo SINE Alu 1 133 -179 5905 114 39 2 chr3 23651339 23653176 -203871402 + L1PA16 LINE L1 4303 6156 -10 183 80 0 0 chr3 23653182 23653207 -203871371 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1432 181 14 55 chr3 23653207 23653364 -203871214 + AluJo SINE Alu 138 281 -31 324 0 0 0 chr3 23653368 23653404 -203871174 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 861 188 0 0 chr3 23653989 23654122 -203870456 + FLAM_A SINE Alu 1 133 0 392 180 0 11 chr3 23654122 23654211 -203870367 + GA-rich Low_complexity Low_complexity 3 90 0 660 252 20 2 chr3 23654393 23654593 -203869985 + L1ME3A LINE L1 5768 5973 -197 248 250 94 10 chr3 23655318 23655414 -203869164 - L1ME LINE L1 -319 5802 5699 1727 165 10 3 chr3 23655557 23655848 -203868730 - L1MC1 LINE L1 -1 6332 6040 1140 179 13 79 chr3 23655848 23656166 -203868412 - L1ME LINE L1 -1012 5134 4838 536 252 14 7 chr3 23656365 23656508 -203868070 + MIR SINE MIR 119 262 0 2172 136 3 3 chr3 23657169 23657479 -203867099 - AluSx SINE Alu -2 310 1 1935 171 90 84 chr3 23657600 23658145 -203866433 - LTR10A LTR ERV1 -61 548 1 27678 218 15 25 chr3 23658145 23665510 -203859068 - LTR10A-int LTR ERV1 0 6649 501 546 255 71 64 chr3 23665568 23665850 -203858728 - LTR10A-int LTR ERV1 -6360 289 6 1763 182 162 43 chr3 23665850 23666339 -203858239 - LTR10A LTR ERV1 -62 547 1 966 82 0 70 chr3 23667158 23667316 -203857262 - L1PA15 LINE L1 -5 6160 6014 3573 190 90 11 chr3 23667329 23668143 -203856435 - MER63C DNA MER1_type 0 930 53 201 331 66 16 chr3 23668313 23668434 -203856144 + L2 LINE L2 3182 3308 -5 1218 259 51 45 chr3 23669350 23669422 -203855156 + L2 LINE L2 2586 2656 -657 2182 88 20 39 chr3 23669422 23669727 -203854851 - AluSg SINE Alu -11 299 1 1218 259 51 45 chr3 23669727 23670374 -203854204 + L2 LINE L2 2656 3308 -5 627 227 220 86 chr3 23671051 23671538 -203853040 - MLT1H1 LTR MaLR 0 548 1 1914 321 62 47 chr3 23672012 23673565 -203851013 + HERV16 LTR ERVL 3134 5008 -477 898 315 74 30 chr3 23673993 23674465 -203850113 + LTR16B LTR ERVL 1 464 0 559 268 13 19 chr3 23674546 23674703 -203849875 + L1ME3A LINE L1 5503 5658 -512 1782 178 68 11 chr3 23674722 23675076 -203849502 + MLT1A2 LTR MaLR 1 374 0 2446 140 69 9 chr3 23675093 23675514 -203849064 - Tigger2 DNA MER2_type 0 2718 2273 254 217 150 0 chr3 23675501 23675561 -203849017 - Tigger2 DNA MER2_type -2648 70 2 * 1619 223 45 19 chr3 23675561 23675999 -203848579 + L1ME3A LINE L1 5717 6165 -5 371 252 93 29 chr3 23676062 23676201 -203848377 + HsTC2 DNA Tc2 1 148 -1750 243 182 0 73 chr3 23676202 23676257 -203848321 + HsTC2 DNA Tc2 1281 1331 -567 1347 215 34 20 chr3 23676264 23676613 -203847965 - HsTC2 DNA Tc2 -101 1797 1444 1554 260 67 33 chr3 23676629 23677048 -203847530 + LTR16A LTR ERVL 18 450 0 629 211 105 23 chr3 23677048 23677219 -203847359 - HsTC2 DNA Tc2 -449 1449 1265 314 198 20 69 chr3 23677226 23677327 -203847251 - HsTC2 DNA Tc2 -66 1832 19 253 242 0 30 chr3 23678103 23678169 -203846409 + CT-rich Low_complexity Low_complexity 6 69 0 509 315 96 44 chr3 23678344 23679085 -203845493 + L1MC4a LINE L1 2701 3486 -2660 252 301 142 43 chr3 23679112 23679394 -203845184 + L1P LINE L1 3526 3835 -2311 705 270 54 35 chr3 23679403 23679718 -203844860 + L1MC4a LINE L1 5523 5843 -1965 369 111 16 0 chr3 23679981 23680044 -203844534 - L1PA16 LINE L1 0 6166 6103 13379 235 34 19 chr3 23680145 23683254 -203841324 - L1PA13 LINE L1 -1522 5275 1575 2181 134 0 0 chr3 23683254 23683553 -203841025 - AluSq SINE Alu -14 299 1 13379 235 34 19 chr3 23683553 23685150 -203839428 - L1PA13 LINE L1 -5222 1575 2 396 0 0 0 chr3 23685596 23685640 -203838938 + (GA)n Simple_repeat Simple_repeat 2 45 0 559 278 42 47 chr3 23685741 23685953 -203838625 - MIR SINE MIR -21 241 31 23 0 0 0 chr3 23686022 23686045 -203838533 + AT_rich Low_complexity Low_complexity 1 23 0 2275 83 0 0 chr3 23686051 23686328 -203838250 + AluSg SINE Alu 1 277 -33 2039 210 24 7 chr3 23686807 23687230 -203837348 - MER63B DNA MER1_type -1 435 6 2105 227 100 27 chr3 23687371 23688066 -203836512 + Charlie7 DNA MER1_type 1660 2415 -197 875 178 33 11 chr3 23688066 23688246 -203836332 - L1PA16 LINE L1 -14 6152 5969 2105 227 100 27 chr3 23688246 23688299 -203836279 + Charlie7 DNA MER1_type 2415 2463 -149 433 217 0 0 chr3 23688299 23688382 -203836196 + MER5A DNA MER1_type 12 94 -95 231 222 74 0 chr3 23688666 23688720 -203835858 - MIR SINE MIR 0 262 205 266 237 17 0 chr3 23688729 23688788 -203835790 - MIR SINE MIR -201 61 2 237 237 10 62 chr3 23688793 23688890 -203835688 + Charlie7 DNA MER1_type 2516 2607 -5 191 258 240 73 chr3 23689071 23689346 -203835232 + L2 LINE L2 2991 3311 -2 253 368 8 8 chr3 23689621 23689738 -203834840 + MIR SINE MIR 29 145 -63 1859 137 25 11 chr3 23690225 23690510 -203834068 - AluJo SINE Alu -21 291 3 29 47 0 0 chr3 23690514 23690557 -203834021 + AT_rich Low_complexity Low_complexity 1 43 0 201 176 0 0 chr3 23690616 23690650 -203833928 + A-rich Low_complexity Low_complexity 1 34 0 2058 103 4 0 chr3 23690687 23690950 -203833628 - AluSx SINE Alu -21 291 28 339 315 63 0 chr3 23692267 23692394 -203832184 + L3b LINE CR1 1361 1495 -88 1036 304 59 17 chr3 23694099 23694560 -203830018 - L2 LINE L2 -2 3311 2832 908 239 167 61 chr3 23695289 23695732 -203828846 + MLT1G1 LTR MaLR 60 588 -6 712 324 81 29 chr3 23696702 23697247 -203827331 + L2 LINE L2 2694 3272 0 240 227 164 27 chr3 23697517 23697627 -203826951 - L2 LINE L2 -2 3311 3187 2644 33 7 0 chr3 23698020 23698321 -203826257 - AluY SINE Alu -8 303 1 337 273 148 68 chr3 23698697 23698975 -203825603 + MLT1H LTR MaLR 13 312 -237 379 198 51 3 chr3 23699051 23699158 -203825420 + MLT1H LTR MaLR 281 549 0 261 296 111 0 chr3 23699190 23699271 -203825307 - MIR SINE MIR -160 102 13 595 221 123 0 chr3 23699595 23699749 -203824829 + MIR SINE MIR 66 238 -24 1061 270 83 62 chr3 23699831 23700480 -203824098 + MLT2F LTR ERVL 1 663 0 210 71 0 0 chr3 23701432 23701460 -203823118 + (A)n Simple_repeat Simple_repeat 1 28 0 585 257 26 2 chr3 23701778 23701943 -203822635 + L1ME3A LINE L1 5640 5811 -379 2110 179 57 18 chr3 23701959 23702400 -203822178 - MLT1C LTR MaLR 0 467 10 501 269 58 6 chr3 23702408 23702579 -203821999 + L1ME3A LINE L1 5798 5977 -193 393 231 213 0 chr3 23702638 23702798 -203821780 + L1ME3A LINE L1 5962 6155 -15 423 180 129 43 chr3 23702802 23702941 -203821637 + MIR3 SINE MIR 23 173 -35 504 339 23 14 chr3 23703046 23703267 -203821311 + MIR SINE MIR 21 243 -19 2054 85 59 7 chr3 23703826 23704097 -203820481 + AluSp SINE Alu 1 285 -28 2335 88 3 10 chr3 23704628 23704933 -203819645 + AluSx SINE Alu 1 303 -9 345 314 111 5 chr3 23705545 23705755 -203818823 - MIR SINE MIR -6 256 18 193 211 105 0 chr3 23705771 23705828 -203818750 + L2 LINE L2 3209 3271 -1 590 301 5 16 chr3 23706783 23706893 -203817685 - MIR SINE MIR -2 260 151 1167 203 106 31 chr3 23706893 23707213 -203817365 + MER2 DNA MER2_type 1 344 0 590 301 5 16 chr3 23707213 23707295 -203817283 - MIR SINE MIR -111 151 70 388 200 42 42 chr3 23707382 23707502 -203817076 - MLT1L LTR MaLR 0 615 496 379 224 37 82 chr3 23707655 23707759 -203816819 - MLT1L LTR MaLR -337 278 180 1871 160 80 35 chr3 23707759 23708134 -203816444 + MSTD LTR MaLR 1 392 -4 379 224 37 82 chr3 23708134 23708163 -203816415 - MLT1L LTR MaLR -435 180 151 358 213 37 56 chr3 23708252 23708360 -203816218 + MIR SINE MIR 98 203 -59 1488 244 98 12 chr3 23708672 23709090 -203815488 - LTR16A1 LTR ERVL -1 456 3 307 221 0 15 chr3 23709104 23709172 -203815406 + LTR67 LTR ERVL 491 557 0 22 0 0 0 chr3 23709608 23709630 -203814948 + AT_rich Low_complexity Low_complexity 1 22 0 382 315 31 0 chr3 23710712 23710842 -203813736 + MIR SINE MIR 92 225 -37 358 254 46 46 chr3 23711801 23711931 -203812647 - MER94 DNA DNA -1 133 4 308 130 0 0 chr3 23711931 23711977 -203812601 - LTR16C LTR ERVL 0 491 446 6889 141 23 5 chr3 23712040 23712534 -203812044 + Tigger3b DNA MER2_type 110 594 -2434 2002 116 48 61 chr3 23712534 23712912 -203811666 - THE1C LTR MaLR -2 373 1 6889 141 23 5 chr3 23712912 23713519 -203811059 + Tigger3b DNA MER2_type 594 1231 0 1111 289 79 38 chr3 23713519 23713937 -203810641 - LTR16C LTR ERVL -56 435 1 5984 87 33 0 chr3 23714533 23715371 -203809207 + L1PA13 LINE L1 5284 6149 -14 328 251 66 71 chr3 23715490 23715673 -203808905 - MLT1K LTR MaLR -5 583 402 259 274 50 37 chr3 23716398 23716557 -203808021 + MIR SINE MIR 19 183 -64 700 278 117 40 chr3 23717255 23717579 -203806999 - MLT1J2 LTR MaLR 0 450 102 6280 79 38 0 chr3 23717682 23718478 -203806100 + LTR12 LTR ERV1 1 826 0 437 256 89 1 chr3 23718485 23718612 -203805966 - MIR SINE MIR -67 141 6 1187 269 153 56 chr3 23719287 23719848 -203804730 - MLT1G1 LTR MaLR -2 588 1 450 290 55 0 chr3 23719925 23720070 -203804508 - MIR SINE MIR -64 198 46 2177 105 14 24 chr3 23720522 23720843 -203803735 - AluSg SINE Alu 0 310 1 255 188 21 0 chr3 23720844 23720892 -203803686 + MER94 DNA DNA 27 75 -59 577 190 9 9 chr3 23720909 23721025 -203803553 + L1ME3 LINE L1 6039 6154 -8 344 243 0 0 chr3 23721050 23721124 -203803454 + MER94 DNA DNA 61 134 0 2323 112 18 68 chr3 23721364 23721747 -203802831 - THE1B LTR MaLR 0 364 1 7524 91 243 37 chr3 23721747 23723057 -203801521 - THE1B-int LTR MaLR 0 1580 1 1221 121 25 3 chr3 23723057 23723336 -203801242 - THE1B LTR MaLR 0 364 2 214 290 0 14 chr3 23723339 23723408 -203801170 + (TGG)n Simple_repeat Simple_repeat 3 70 0 912 198 6 0 chr3 23723422 23723579 -203800999 - FRAM SINE Alu -22 154 1 250 155 10 52 chr3 23723649 23723746 -203800832 + (TGG)n Simple_repeat Simple_repeat 2 94 0 291 153 24 12 chr3 23723807 23723892 -203800686 + (TGG)n Simple_repeat Simple_repeat 3 88 0 351 305 23 15 chr3 23724444 23724575 -203800003 - MIR SINE MIR -23 239 108 1834 158 13 13 chr3 23724721 23725032 -203799546 - AluJb SINE Alu -1 311 1 6276 94 36 0 chr3 23725038 23726135 -203798443 - L1PA13 LINE L1 0 6163 5054 194 203 186 0 chr3 23727820 23727879 -203796699 - L2 LINE L2 0 3272 3203 262 189 19 0 chr3 23727904 23727957 -203796621 - MIR SINE MIR -101 161 108 187 311 39 39 chr3 23727983 23728086 -203796492 - L2 LINE L2 -93 3220 3118 1439 314 126 34 chr3 23728428 23729726 -203794852 - L2 LINE L2 -1764 1550 133 214 333 35 0 chr3 23731118 23731205 -203793373 - MIR SINE MIR -71 191 102 358 125 11 91 chr3 23781298 23781386 -203743192 + LTR37B LTR ERV1 384 464 -4 2369 92 0 0 chr3 23781562 23781865 -203742713 + AluSx SINE Alu 1 303 -9 259 270 96 6 chr3 23781879 23782057 -203742521 + L1ME LINE L1 5704 5897 -224 1766 181 23 20 chr3 23782868 23783217 -203741361 + MLT1B LTR MaLR 41 390 0 564 291 24 6 chr3 23783709 23783874 -203740704 - MIR3 SINE MIR -9 199 32 1351 172 66 3 chr3 23783968 23784270 -203740308 - MER33 DNA MER1_type -2 322 2 603 218 93 79 chr3 23784549 23784765 -203739813 + MIR SINE MIR 23 241 -21 605 182 56 5 chr3 23785029 23785169 -203739409 - MLT1G LTR MaLR -1 571 429 265 316 20 10 chr3 23785185 23785283 -203739295 - MIR SINE MIR -161 101 3 1061 242 35 38 chr3 23785290 23785374 -203739204 + MER46C DNA MER2_type 1 84 -254 2014 152 0 13 chr3 23785374 23785683 -203738895 + AluSx SINE Alu 1 305 -7 1061 242 35 38 chr3 23785683 23785937 -203738641 + MER46C DNA MER2_type 84 338 0 413 299 53 0 chr3 23785941 23786128 -203738450 - MIR SINE MIR -7 255 59 1351 191 98 9 chr3 23787349 23787790 -203736788 - MER119 DNA MER1_type 0 583 6 2456 77 7 0 chr3 23789012 23789311 -203735267 + AluY SINE Alu 1 301 -10 430 284 194 10 chr3 23790142 23790343 -203734235 + MIR SINE MIR 4 241 -21 214 309 108 14 chr3 23791195 23791334 -203733244 - MIR3 SINE MIR -55 153 2 2277 110 7 0 chr3 23791468 23791767 -203732811 + AluSc SINE Alu 1 301 -8 310 333 8 8 chr3 23791804 23791930 -203732648 + L2 LINE L2 3187 3312 -1 4083 153 20 25 chr3 23791981 23792124 -203732454 - MER50 LTR ERV1 -23 711 569 1473 148 0 4 chr3 23792124 23792353 -203732225 + AluJb SINE Alu 71 298 -14 4083 153 20 25 chr3 23792353 23792916 -203731662 - MER50 LTR ERV1 -165 569 9 525 212 27 94 chr3 23794414 23794716 -203729862 - MLT1H LTR MaLR -56 493 172 2600 183 118 11 chr3 23794725 23795266 -203729312 - MER77 LTR ERV1 -6 599 1 326 213 220 21 chr3 23795266 23795402 -203729176 - MLT1H LTR MaLR -373 176 13 537 146 9 27 chr3 23796789 23796899 -203727679 - L1MA3 LINE L1 0 6305 6198 446 224 170 20 chr3 23797233 23797380 -203727198 - MER5A DNA MER1_type -1 188 20 290 188 47 16 chr3 23797409 23797473 -203727105 - MER5B DNA MER1_type 0 178 113 887 182 62 0 chr3 23797506 23797682 -203726896 + MER5A DNA MER1_type 3 189 0 289 230 10 100 chr3 23797692 23797792 -203726786 + L1MC4 LINE L1 7413 7503 -539 201 138 0 0 chr3 23797924 23797953 -203726625 + (TG)n Simple_repeat Simple_repeat 2 30 0 245 330 36 0 chr3 23798035 23798147 -203726431 + MER5A DNA MER1_type 8 123 -66 738 244 45 98 chr3 23798222 23798578 -203726000 - MER102b DNA MER1_type -4 337 1 258 298 29 10 chr3 23799078 23799182 -203725396 + MIR SINE MIR 41 146 -62 2272 99 0 7 chr3 23799842 23800144 -203724434 + AluSc SINE Alu 1 300 -9 507 241 30 0 chr3 23800347 23800480 -203724098 + L1MC5 LINE L1 7789 7925 -36 1137 125 12 0 chr3 23801155 23801315 -203723263 + AluSg/x SINE Alu 138 299 -13 452 301 0 14 chr3 23801757 23801903 -203722675 - MIR3 SINE MIR -9 199 56 379 206 69 29 chr3 23802174 23802276 -203722302 - MER67A LTR ERV1 0 543 438 352 331 15 8 chr3 23802302 23802435 -203722143 - L2 LINE L2 -5 3267 3134 1673 267 117 9 chr3 23802505 23803037 -203721541 - MLT1G1 LTR MaLR 0 595 7 189 255 124 87 chr3 23803083 23803244 -203721334 - L2 LINE L2 -237 3035 2869 1193 218 102 95 chr3 23803371 23803883 -203720695 - MLT1G LTR MaLR -7 583 65 2163 100 14 3 chr3 23803883 23804172 -203720406 - AluSq SINE Alu -21 292 1 1193 218 102 95 chr3 23804172 23804229 -203720349 - MLT1G LTR MaLR -525 65 10 517 256 7 29 chr3 23804239 23804376 -203720202 + MER94 DNA DNA 1 134 0 378 239 0 62 chr3 23805624 23805637 -203718941 + MER81 DNA DNA 1 13 -101 1578 186 40 45 chr3 23805637 23805803 -203718775 + MLT1A2 LTR MaLR 1 166 -208 249 33 0 0 chr3 23805803 23805833 -203718745 + (TC)n Simple_repeat Simple_repeat 1 30 0 1578 186 40 45 chr3 23805833 23806042 -203718536 + MLT1A2 LTR MaLR 166 374 0 378 239 0 62 chr3 23806042 23806141 -203718437 + MER81 DNA DNA 13 106 -8 232 153 85 0 chr3 23806756 23806815 -203717763 + LTR37B LTR ERV1 5 68 -400 2461 82 0 0 chr3 23806944 23807248 -203717330 - AluY SINE Alu -7 304 1 390 225 0 0 chr3 23807313 23807393 -203717185 + LTR37B LTR ERV1 200 279 -189 484 299 97 9 chr3 23807494 23807711 -203716867 - L1ME LINE L1 -430 5740 5505 326 292 77 15 chr3 23807744 23807939 -203716639 - L1ME LINE L1 -1306 4840 4634 1791 159 37 57 chr3 23807945 23808328 -203716250 - THE1C LTR MaLR 0 375 1 308 253 163 0 chr3 23808378 23808544 -203716034 - L1ME LINE L1 -1562 4584 4392 * 718 342 48 12 chr3 23808542 23808957 -203715621 + L1MC4a LINE L1 5434 5863 -1945 * 735 220 12 0 chr3 23808955 23809128 -203715450 - L1ME LINE L1 -3009 3137 2963 * 28003 61 6 2 chr3 23809125 23815250 -203709328 - L1PA6 LINE L1 0 6154 3 1268 232 13 3 chr3 23815251 23815566 -203709012 - L1ME LINE L1 -3169 2977 2660 220 256 0 0 chr3 23815763 23815806 -203708772 + polypyrimidine Low_complexity Low_complexity 1 43 0 368 290 11 0 chr3 23816484 23816577 -203708001 + L2 LINE L2 3178 3271 -1 288 137 0 0 chr3 23816824 23816875 -203707703 + (CA)n Simple_repeat Simple_repeat 1 51 0 833 274 52 110 chr3 23818204 23818649 -203705929 - LTR16C LTR ERVL 0 491 73 453 288 18 0 chr3 23819552 23819663 -203704915 - MER5A DNA MER1_type -5 184 72 2372 108 33 28 chr3 23819687 23820047 -203704531 + THE1B LTR MaLR 1 362 -2 196 278 139 14 chr3 23820450 23820522 -203704056 - L2 LINE L2 -2 3270 3190 2571 155 19 19 chr3 23820573 23821005 -203703573 - MSTB1 LTR MaLR 0 432 1 189 207 230 35 chr3 23822260 23822347 -203702231 + L2 LINE L2 3199 3302 -11 2015 188 30 37 chr3 23822349 23822592 -203701986 + L1ME2 LINE L1 5727 5970 -194 1115 201 52 101 chr3 23822592 23822746 -203701832 + MLT1A2 LTR MaLR 4 164 -210 2076 105 0 3 chr3 23822746 23823057 -203701521 + AluSc SINE Alu 1 309 0 1115 201 52 101 chr3 23823057 23823290 -203701288 + MLT1A2 LTR MaLR 164 372 -2 2015 188 30 37 chr3 23823290 23823302 -203701276 + L1ME2 LINE L1 5970 5981 -183 1688 153 28 92 chr3 23823302 23823702 -203700876 - MLT1A2 LTR MaLR 0 374 1 2015 188 30 37 chr3 23823702 23823877 -203700701 + L1ME2 LINE L1 5981 6155 -9 383 297 18 9 chr3 23824689 23824800 -203699778 - MER117 DNA MER1_type -1 196 85 * 1886 183 67 31 chr3 23824797 23825148 -203699430 - MER63B DNA MER1_type -626 436 66 3259 95 44 23 chr3 23825148 23825630 -203698948 - LTR22B LTR ERVK 0 492 1 1886 183 67 31 chr3 23825630 23825699 -203698879 - MER63B DNA MER1_type -996 66 1 324 190 0 35 chr3 23825895 23825953 -203698625 + MER91 DNA MER1_type 141 196 0 837 200 53 6 chr3 23826683 23826853 -203697725 - MER45A DNA AcHobo 0 178 1 180 97 0 0 chr3 23827320 23827351 -203697227 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 484 216 108 0 chr3 23827365 23827467 -203697111 - MER81 DNA DNA -1 113 1 257 178 0 0 chr3 23827753 23827798 -203696780 + MER5B DNA MER1_type 1 45 -133 569 274 0 0 chr3 23828028 23828145 -203696433 - FLAM_A SINE Alu -14 128 12 446 281 111 7 chr3 23829334 23829469 -203695109 - MIR3 SINE MIR -10 198 50 243 261 0 0 chr3 23830636 23830682 -203693896 + L2 LINE L2 3247 3292 -21 258 301 14 0 chr3 23830704 23830777 -203693801 + L2 LINE L2 3240 3313 0 232 337 39 67 chr3 23830829 23831007 -203693571 - L3 LINE CR1 -93 1484 1312 2372 31 41 0 chr3 23831033 23831327 -203693251 - AluY SINE Alu -5 306 1 411 232 12 0 chr3 23831623 23831705 -203692873 + MLT2F LTR ERVL 5 87 -576 2223 108 156 3 chr3 23832167 23832538 -203692040 + MSTA LTR MaLR 1 428 0 2121 243 24 11 chr3 23832609 23833035 -203691543 + MLT2F LTR ERVL 186 620 -43 933 7 50 14 chr3 23833035 23833176 -203691402 + (TCTA)n Simple_repeat Simple_repeat 3 148 0 2121 243 24 11 chr3 23833176 23833214 -203691364 + MLT2F LTR ERVL 620 656 -7 1227 235 48 24 chr3 23833753 23834085 -203690493 + MER102b DNA MER1_type 2 341 0 1254 268 93 15 chr3 23834096 23834506 -203690072 + LTR16C LTR ERVL 1 442 -49 3325 227 3 3 chr3 23834528 23835166 -203689412 + MER82 DNA MER2_type 16 653 0 2179 185 29 14 chr3 23835267 23836295 -203688283 + L1MEc LINE L1 91 1180 -5216 2463 63 0 0 chr3 23836571 23836871 -203687707 + AluY SINE Alu 1 300 -11 1579 177 75 0 chr3 23836877 23836994 -203687584 - L1MA9 LINE L1 -22 6290 6183 231 114 0 0 chr3 23836994 23837029 -203687549 + (TG)n Simple_repeat Simple_repeat 2 36 0 1579 177 75 0 chr3 23837029 23837245 -203687333 - L1MA9 LINE L1 -129 6183 5932 715 197 0 0 chr3 23837468 23837590 -203686988 - FLAM_C SINE Alu -18 125 4 1065 189 41 49 chr3 23837672 23837915 -203686663 - MSTD LTR MaLR 0 396 156 1057 227 54 14 chr3 23838022 23838300 -203686278 - MLT1C LTR MaLR -178 289 1 527 327 63 15 chr3 23838445 23838714 -203685864 - L2 LINE L2 -61 3252 2971 241 314 114 29 chr3 23838719 23838859 -203685719 - L2 LINE L2 -308 3005 2854 2339 273 103 23 chr3 23839413 23840529 -203684049 + L2 LINE L2 2103 3312 -1 193 286 13 39 chr3 23840624 23840701 -203683877 - MIR3 SINE MIR -30 178 104 757 189 25 44 chr3 23842135 23842294 -203682284 + MER5A DNA MER1_type 2 157 -32 572 276 78 58 chr3 23842524 23842767 -203681811 - MIR SINE MIR -11 251 4 428 232 101 0 chr3 23843182 23843281 -203681297 + MER96 DNA MER1_type? 55 163 -12 217 338 13 13 chr3 23843436 23843513 -203681065 + L2 LINE L2 3122 3198 -74 266 276 49 18 chr3 23843677 23843840 -203680738 + (TG)n Simple_repeat Simple_repeat 2 169 0 356 218 34 50 chr3 23844269 23844448 -203680130 + (TG)n Simple_repeat Simple_repeat 2 177 0 236 231 9 56 chr3 23844428 23844536 -203680042 + (TATG)n Simple_repeat Simple_repeat 3 105 0 * 327 233 31 43 chr3 23844482 23844645 -203679933 + (TG)n Simple_repeat Simple_repeat 1 161 0 472 204 9 37 chr3 23844674 23844782 -203679796 - MER81 DNA DNA -1 113 9 626 262 228 5 chr3 23845484 23845716 -203678862 - MIR SINE MIR 0 262 1 341 361 65 34 chr3 23845769 23846059 -203678519 + L1ME2 LINE L1 5654 5956 -206 790 186 40 40 chr3 23846413 23846590 -203677988 - MER5A DNA MER1_type -12 177 1 376 312 159 25 chr3 23846630 23846787 -203677791 - MER5A DNA MER1_type 0 189 12 225 329 128 34 chr3 23846813 23846962 -203677616 - MER5A DNA MER1_type -6 183 21 650 177 88 7 chr3 23847217 23847364 -203677214 + MIR SINE MIR 47 205 -57 184 247 169 22 chr3 23847504 23847593 -203676985 + L3b LINE CR1 1378 1479 -104 * 709 262 14 0 chr3 23847547 23847688 -203676890 - MER5B DNA MER1_type -21 157 15 408 238 322 7 chr3 23848472 23848615 -203675963 + MER5A DNA MER1_type 1 188 -1 288 265 309 0 chr3 23848622 23848758 -203675820 + MER5B DNA MER1_type 1 178 0 531 172 2 2 chr3 23849034 23849135 -203675443 + MER5A DNA MER1_type 9 98 -80 365 266 6 79 chr3 23850734 23850911 -203673667 + L2 LINE L2 2883 3046 -226 884 249 151 53 chr3 23850977 23851414 -203673164 - LTR16C LTR ERVL 0 491 12 256 156 22 0 chr3 23851451 23851496 -203673082 + L2 LINE L2 3262 3307 -6 476 32 16 0 chr3 23852076 23852138 -203672440 + (TAGA)n Simple_repeat Simple_repeat 3 65 0 368 287 21 0 chr3 23852150 23852246 -203672332 + MIR SINE MIR 67 165 -43 5044 156 29 9 chr3 23852300 23853308 -203671270 + L1MB7 LINE L1 5156 6183 -1 2086 96 3 7 chr3 23853322 23853613 -203670965 + AluSg SINE Alu 1 290 -20 1000 275 110 43 chr3 23853613 23854075 -203670503 - MLT1H LTR MaLR -42 507 15 234 264 8 74 chr3 23854078 23854199 -203670379 + MIR SINE MIR 149 261 -1 320 236 55 36 chr3 23854265 23854375 -203670203 - MIR3 SINE MIR -9 199 88 615 238 35 17 chr3 23854629 23854801 -203669777 + Charlie8 DNA MER1_type 8 182 -2235 250 254 70 0 chr3 23855633 23855704 -203668874 + MER91C DNA MER1_type 36 111 -29 286 266 266 8 chr3 23855880 23856004 -203668574 - MIR SINE MIR 0 262 107 294 214 167 12 chr3 23856037 23856121 -203668457 - MIR SINE MIR 0 262 166 186 180 0 80 chr3 23856092 23856142 -203668436 - MIR3 SINE MIR -43 165 120 * 246 123 175 0 chr3 23856266 23856323 -203668255 - MIR SINE MIR -147 115 49 2556 42 0 0 chr3 23856696 23857006 -203667572 + AluY SINE Alu 1 310 -1 548 244 81 47 chr3 23857707 23857879 -203666699 - MIR SINE MIR -22 240 63 238 258 135 11 chr3 23858072 23858161 -203666417 - MIR SINE MIR -12 250 151 474 353 59 23 chr3 23858301 23858522 -203666056 - MIR SINE MIR -29 233 5 458 250 112 0 chr3 23859302 23859454 -203665124 + L1MD3 LINE L1 7816 7984 -11 464 303 51 11 chr3 23860440 23860615 -203663963 + MIR SINE MIR 62 243 -19 1338 83 19 10 chr3 23860658 23860863 -203663715 - L1P LINE L1 -777 5369 5163 3566 92 11 0 chr3 23860863 23861340 -203663238 + L1PA10 LINE L1 5686 6167 -1 237 297 54 27 chr3 23861362 23861436 -203663142 - L2 LINE L2 -34 3279 3204 1011 132 52 11 chr3 23861595 23861769 -203662809 + MER5A DNA MER1_type 1 181 -8 189 146 0 83 chr3 23861771 23861819 -203662759 - MIR SINE MIR -93 169 126 373 281 25 75 chr3 23862353 23862552 -203662026 - LTR16A1 LTR ERVL 0 457 269 309 287 49 35 chr3 23862697 23862840 -203661738 - MIR3 SINE MIR -45 163 19 984 144 55 11 chr3 23862913 23863094 -203661484 - MER5A DNA MER1_type 0 189 1 218 289 36 12 chr3 23863839 23863922 -203660656 - MIR SINE MIR -71 191 107 617 261 71 60 chr3 23864381 23864664 -203659914 - MLT1J LTR MaLR -2 509 224 337 298 32 32 chr3 23865318 23865442 -203659136 - L2 LINE L2 -9 3263 3140 237 139 0 0 chr3 23865535 23865578 -203659000 + (CA)n Simple_repeat Simple_repeat 2 44 0 1127 208 96 96 chr3 23865854 23866288 -203658290 - LTR16A1 LTR ERVL 0 457 21 2140 127 40 30 chr3 23866288 23866659 -203657919 - THE1C LTR MaLR 0 375 1 1127 208 96 96 chr3 23866659 23866681 -203657897 - LTR16A1 LTR ERVL -435 22 1 289 274 95 0 chr3 23867315 23867399 -203657179 - MIR3 SINE MIR -6 202 111 2583 58 0 0 chr3 23867510 23867820 -203656758 - AluY SINE Alu -1 310 1 2409 94 0 0 chr3 23868690 23868987 -203655591 + AluSx SINE Alu 1 297 -15 282 342 9 9 chr3 23869145 23869259 -203655319 - MIR3 SINE MIR -32 176 63 250 278 176 9 chr3 23869405 23869513 -203655065 - MIR SINE MIR -67 141 16 277 198 19 0 chr3 23869777 23869883 -203654695 + CT-rich Low_complexity Low_complexity 2 109 0 414 0 0 0 chr3 23869883 23869929 -203654649 + (CA)n Simple_repeat Simple_repeat 1 46 0 254 223 48 68 chr3 23870537 23870640 -203653938 - MER91B DNA MER1_type 0 190 90 417 352 0 0 chr3 23870658 23870786 -203653792 - MER91B DNA MER1_type -61 129 2 335 299 0 0 chr3 23871213 23871320 -203653258 + (TG)n Simple_repeat Simple_repeat 2 108 0 1666 165 14 20 chr3 23872434 23872731 -203651847 + AluJb SINE Alu 1 295 -17 2417 80 3 3 chr3 23872731 23873042 -203651536 + AluY SINE Alu 1 311 0 378 0 0 0 chr3 23873841 23873883 -203650695 + (A)n Simple_repeat Simple_repeat 1 42 0 2568 57 7 0 chr3 23874688 23874987 -203649591 - AluSc SINE Alu -8 301 1 25 0 0 0 chr3 23875188 23875213 -203649365 + AT_rich Low_complexity Low_complexity 1 25 0 366 42 0 0 chr3 23875463 23875511 -203649067 + (TG)n Simple_repeat Simple_repeat 2 49 0 464 224 218 13 chr3 23875629 23875785 -203648793 - MIR SINE MIR -28 234 47 339 286 0 0 chr3 23875997 23876081 -203648497 - LTR37A LTR ERV1 -335 91 8 261 250 0 0 chr3 23876621 23876729 -203647849 + CT-rich Low_complexity Low_complexity 1 108 0 248 267 0 0 chr3 23877426 23877486 -203647092 + L2 LINE L2 3208 3267 -5 619 257 47 0 chr3 23877514 23877685 -203646893 - MIR SINE MIR -26 236 58 601 226 122 11 chr3 23877694 23877875 -203646703 - MIR SINE MIR -30 232 32 197 263 53 0 chr3 23878934 23878991 -203645587 - MIR3 SINE MIR -134 74 15 653 171 42 102 chr3 23879112 23879276 -203645302 + MER3 DNA MER1_type 6 157 -52 1499 149 73 44 chr3 23879276 23879587 -203644991 + AluJo SINE Alu 1 319 0 653 171 42 102 chr3 23879587 23879637 -203644941 + MER3 DNA MER1_type 157 208 -1 285 178 11 111 chr3 23880064 23880154 -203644424 - MIR3 SINE MIR -22 186 106 277 229 92 46 chr3 23881370 23881501 -203643077 + MLT1I LTR MaLR 1 137 -272 352 239 62 92 chr3 23881629 23881759 -203642819 + MLT1H LTR MaLR 424 549 0 700 265 46 53 chr3 23881963 23882495 -203642083 + MLT2F LTR ERVL 13 655 -8 359 188 25 0 chr3 23882600 23882680 -203641898 - MIR SINE MIR -6 256 175 1461 271 55 22 chr3 23883400 23883853 -203640725 + MLT2E LTR ERVL 1 468 -160 2297 73 14 3 chr3 23884517 23884805 -203639773 + AluY SINE Alu 1 291 -20 707 175 96 24 chr3 23884851 23885017 -203639561 + MER5B DNA MER1_type 1 178 0 405 228 73 32 chr3 23885017 23885140 -203639438 - MER5A DNA MER1_type -5 184 57 1304 237 122 10 chr3 23885166 23885575 -203639003 + MSTB2 LTR MaLR 1 455 -2 219 295 209 7 chr3 23885974 23886113 -203638465 - MIR SINE MIR -83 179 13 1074 186 144 23 chr3 23886923 23887187 -203637391 - AluJo SINE Alu -5 297 2 24 0 0 0 chr3 23887937 23887961 -203636617 + AT_rich Low_complexity Low_complexity 1 24 0 588 326 37 5 chr3 23889742 23889957 -203634621 + L2 LINE L2 113 334 -2980 963 194 50 0 chr3 23889957 23890137 -203634441 + MER20 DNA MER1_type 24 212 -7 513 282 121 0 chr3 23890149 23890355 -203634223 + L2 LINE L2 372 602 -2712 479 216 246 0 chr3 23890362 23890533 -203634045 + L2 LINE L2 928 1140 -2174 3090 254 126 25 chr3 23890560 23891886 -203632692 + L2 LINE L2 1683 3132 -181 21 0 0 0 chr3 23892336 23892357 -203632221 + AT_rich Low_complexity Low_complexity 1 21 0 249 255 75 28 chr3 23894152 23894258 -203630320 - MIR SINE MIR -88 174 64 200 235 94 35 chr3 23894576 23894661 -203629917 + MIR3 SINE MIR 105 194 -14 1893 95 8 4 chr3 23894811 23895063 -203629515 + AluSg SINE Alu 54 306 -4 869 279 137 29 chr3 23895534 23896300 -203628278 + L2 LINE L2 2455 3308 -5 27 0 0 0 chr3 23896589 23896616 -203627962 + AT_rich Low_complexity Low_complexity 1 27 0 2417 100 0 3 chr3 23896747 23897057 -203627521 - AluSq SINE Alu -2 311 3 479 250 97 17 chr3 23897968 23898144 -203626434 + L2 LINE L2 3122 3311 -2 1129 236 62 18 chr3 23898487 23898904 -203625674 - L1ME3A LINE L1 -2 6160 5701 2218 119 0 0 chr3 23899638 23899932 -203624646 - AluSx SINE Alu -18 294 1 526 271 197 5 chr3 23901342 23901530 -203623048 - MER58A DNA MER1_type 0 224 1 1754 166 16 29 chr3 23901803 23902116 -203622462 - AluJo SINE Alu -3 309 1 22 0 0 0 chr3 23902393 23902415 -203622163 + AT_rich Low_complexity Low_complexity 1 22 0 397 198 35 0 chr3 23902510 23902596 -203621982 + MER41E LTR ERV1 313 401 -111 23 33 0 0 chr3 23902635 23902665 -203621913 + AT_rich Low_complexity Low_complexity 1 30 0 198 241 89 13 chr3 23903083 23903162 -203621416 - MIR SINE MIR -121 141 57 1778 160 14 11 chr3 23903716 23903997 -203620581 + AluJo SINE Alu 1 282 -30 198 0 0 0 chr3 23904002 23904024 -203620554 + (GAAAA)n Simple_repeat Simple_repeat 2 23 0 669 146 0 0 chr3 23904476 23904572 -203620006 + AluSg/x SINE Alu 199 294 -18 2267 95 6 16 chr3 23905337 23905652 -203618926 - AluSq SINE Alu -1 312 1 257 279 15 0 chr3 23906567 23906635 -203617943 - L2 LINE L2 -37 3276 3208 222 241 27 125 chr3 23906810 23906899 -203617679 - MIR SINE MIR -73 189 112 545 234 55 8 chr3 23906899 23907027 -203617551 - MER94 DNA DNA 0 134 1 222 241 27 125 chr3 23907027 23907049 -203617529 - MIR SINE MIR -150 112 89 1072 254 98 15 chr3 23907962 23908371 -203616207 - L2 LINE L2 -1146 2168 1726 437 238 273 6 chr3 23908415 23908587 -203615991 + MIR SINE MIR 45 262 0 260 209 180 7 chr3 23908630 23908769 -203615809 - L2 LINE L2 -1643 1671 1509 243 279 35 23 chr3 23908934 23909020 -203615558 + MIR3 SINE MIR 111 197 -11 1545 145 4 0 chr3 23909770 23910005 -203614573 + MER46A DNA MER2_type 1 236 0 1231 124 143 81 chr3 23910317 23910576 -203614002 - AluJb SINE Alu -5 307 33 242 222 19 0 chr3 23910872 23910926 -203613652 - L2 LINE L2 -1 3271 3217 207 0 0 0 chr3 23911245 23911268 -203613310 + (T)n Simple_repeat Simple_repeat 1 23 0 220 245 170 0 chr3 23911623 23911717 -203612861 + L2 LINE L2 3161 3270 -2 445 295 84 47 chr3 23911787 23911977 -203612601 + MIR SINE MIR 36 232 -30 1601 161 119 0 chr3 23912736 23913047 -203611531 - MER7A DNA MER2_type 0 346 1 942 178 114 25 chr3 23913053 23913289 -203611289 - MIR SINE MIR -4 258 2 646 224 106 25 chr3 23914082 23914327 -203610251 - MER5C DNA MER1_type -1 323 59 180 279 0 66 chr3 23914450 23914511 -203610067 + L2 LINE L2 3210 3266 -6 191 362 39 0 chr3 23917400 23917527 -203607051 + MIR SINE MIR 41 172 -90 329 303 62 100 chr3 23918121 23918441 -203606137 + L2 LINE L2 2965 3272 0 6675 194 55 45 chr3 23919692 23920617 -203603961 - L1MB8 LINE L1 -14 6164 5250 2203 106 3 17 chr3 23920617 23920919 -203603659 - AluSx SINE Alu -14 298 1 6675 194 55 45 chr3 23920919 23922622 -203601956 - L1MB8 LINE L1 -928 5250 3505 2226 107 0 19 chr3 23922622 23922932 -203601646 - AluSq SINE Alu -9 304 1 6675 194 55 45 chr3 23922932 23923227 -203601351 - L1MB8 LINE L1 -2673 3505 3215 22 0 0 0 chr3 23923659 23923681 -203600897 + AT_rich Low_complexity Low_complexity 1 22 0 203 222 0 32 chr3 23924069 23924132 -203600446 + T-rich Low_complexity Low_complexity 3 63 0 3266 219 41 39 chr3 23924732 23926375 -203598203 + L1ME1 LINE L1 4474 6116 -50 200 287 75 28 chr3 23928373 23928534 -203596044 - MIR SINE MIR -63 145 19 1345 214 154 3 chr3 23928541 23929055 -203595523 - MER20B DNA MER1_type -1 782 136 407 179 0 0 chr3 23929092 23929159 -203595419 + MER63 DNA MER1_type 681 747 -313 635 216 15 8 chr3 23929235 23929369 -203595209 - MER20B DNA MER1_type -642 141 7 696 212 0 120 chr3 23934051 23934301 -203590277 + MIR SINE MIR 6 225 -37 192 225 0 0 chr3 23934427 23934467 -203590111 + L2 LINE L2 3264 3303 -10 553 244 73 69 chr3 23934631 23934905 -203589673 - L1MC5 LINE L1 -54 7907 7633 701 237 47 19 chr3 23935018 23935229 -203589349 - L1MC5 LINE L1 -474 7487 7271 266 116 0 0 chr3 23935337 23935380 -203589198 - L1MC4 LINE L1 -791 7251 7209 * 681 218 83 49 chr3 23935361 23935687 -203588891 - L1MC5 LINE L1 -733 7228 6892 1015 230 63 37 chr3 23935781 23936129 -203588449 - L2 LINE L2 -1258 2056 1700 719 137 85 92 chr3 23936143 23936330 -203588248 - L1MD3 LINE L1 -11 7984 7581 266 265 44 0 chr3 23936429 23936497 -203588081 - L2 LINE L2 -18 3254 3184 24 32 0 0 chr3 23937368 23937399 -203587179 + AT_rich Low_complexity Low_complexity 1 31 0 596 265 179 0 chr3 23937575 23937809 -203586769 - L1ME LINE L1 -335 5786 5511 291 316 113 24 chr3 23938102 23938270 -203586308 + MIR3 SINE MIR 24 206 -2 261 290 101 24 chr3 23938308 23938515 -203586063 + L3b LINE CR1 1219 1441 -142 2488 91 0 0 chr3 23939114 23939421 -203585157 + AluSp SINE Alu 1 307 -6 30 0 0 0 chr3 23939581 23939611 -203584967 + AT_rich Low_complexity Low_complexity 1 30 0 1744 96 18 0 chr3 23939611 23939830 -203584748 - AluSg/x SINE Alu -22 290 68 213 274 237 27 chr3 23940098 23940284 -203584294 + L2 LINE L2 2582 2806 -508 316 291 10 10 chr3 23941354 23941457 -203583121 - MLT1I LTR MaLR -4 405 303 1761 155 31 14 chr3 23941457 23941748 -203582830 - AluJo SINE Alu -16 296 1 277 204 112 41 chr3 23941788 23941886 -203582692 - MLT1J2 LTR MaLR -279 171 67 230 139 28 0 chr3 23941899 23941935 -203582643 - MLT1L LTR MaLR -578 37 1 378 281 111 23 chr3 23941973 23942190 -203582388 - MIR SINE MIR -20 242 7 668 208 25 0 chr3 23942811 23942970 -203581608 + MER5B DNA MER1_type 1 163 -15 2323 97 3 0 chr3 23943522 23943820 -203580758 - AluSx SINE Alu -13 299 1 564 216 243 11 chr3 23946183 23946451 -203578127 + LTR16A LTR ERVL 120 449 -1 329 250 129 0 chr3 23947759 23947875 -203576703 + MIR SINE MIR 49 179 -83 * 331 192 77 0 chr3 23947868 23947946 -203576632 - MER91C DNA MER1_type -30 110 27 200 184 0 0 chr3 23948843 23948881 -203575697 - L2 LINE L2 0 3313 3276 323 316 44 44 chr3 23949142 23949367 -203575211 - L2 LINE L2 -436 2878 2654 4929 133 43 23 chr3 23952552 23953052 -203571526 - L1MA7 LINE L1 0 6291 5765 351 0 0 0 chr3 23953052 23953091 -203571487 + (TG)n Simple_repeat Simple_repeat 2 40 0 4929 133 43 23 chr3 23953091 23953449 -203571129 - L1MA7 LINE L1 -526 5765 5416 353 299 24 16 chr3 23953906 23954033 -203570545 - MIR3 SINE MIR -78 130 3 457 243 50 29 chr3 23954376 23954516 -203570062 + MIR SINE MIR 29 171 -91 448 208 23 98 chr3 23954708 23954881 -203569697 + MIR SINE MIR 86 245 -17 276 218 11 58 chr3 23955080 23955167 -203569411 + MIR SINE MIR 180 262 0 2446 74 0 10 chr3 23955883 23956192 -203568386 + AluY SINE Alu 1 306 -5 1000 144 22 11 chr3 23957008 23957188 -203567390 + MER5A DNA MER1_type 5 186 -3 21 0 0 0 chr3 23957301 23957322 -203567256 + AT_rich Low_complexity Low_complexity 1 21 0 279 315 19 19 chr3 23957356 23957376 -203567202 + GA-rich Low_complexity Low_complexity 4 23 -88 1489 189 120 17 chr3 23957376 23957735 -203566843 + MSTD LTR MaLR 1 396 0 279 315 19 19 chr3 23957735 23957822 -203566756 + GA-rich Low_complexity Low_complexity 22 111 0 804 292 103 48 chr3 23959672 23960128 -203564450 - HAL1 LINE L1 -182 2325 1845 1780 264 87 25 chr3 23960162 23960883 -203563695 - HAL1 LINE L1 -762 1745 980 320 242 31 119 chr3 23961107 23961241 -203563337 - HAL1 LINE L1 -2291 216 72 186 43 0 0 chr3 23961241 23961264 -203563314 + (CCTA)n Simple_repeat Simple_repeat 4 26 0 2933 208 74 7 chr3 23961264 23961875 -203562703 + MER82 DNA MER2_type 2 653 0 320 242 31 119 chr3 23961875 23961966 -203562612 - HAL1 LINE L1 -2433 74 10 1567 240 64 52 chr3 23962135 23962289 -203562289 + L1MC/D LINE L1 5270 5421 -2387 2439 79 0 0 chr3 23962289 23962593 -203561985 + AluY SINE Alu 1 304 -7 1567 240 64 52 chr3 23962593 23962955 -203561623 + L1MC/D LINE L1 5421 5792 -2016 186 291 163 35 chr3 23963013 23963105 -203561473 - L2 LINE L2 -926 2388 2309 2536 169 61 4 chr3 23963105 23963583 -203560995 + MLT1D LTR MaLR 1 505 0 186 291 163 35 chr3 23963583 23963631 -203560947 - L2 LINE L2 -1005 2309 2230 2418 81 39 39 chr3 23963818 23964200 -203560378 + L1PA11 LINE L1 5792 6173 -1 23 0 0 0 chr3 23965063 23965086 -203559492 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3 23965256 23965284 -203559294 + AT_rich Low_complexity Low_complexity 1 28 0 1198 225 25 7 chr3 23965294 23965579 -203558999 + MLT1H LTR MaLR 9 298 -251 322 213 0 0 chr3 23965716 23965777 -203558801 + MLT1H LTR MaLR 486 546 -3 2396 72 0 0 chr3 23965867 23966172 -203558406 + AluSc SINE Alu 1 305 -4 380 301 135 6 chr3 23968102 23968258 -203556320 + L2 LINE L2 3138 3313 0 930 266 137 49 chr3 23968532 23968998 -203555580 + MLT1H LTR MaLR 41 547 -2 3834 137 36 15 chr3 23969225 23969966 -203554612 + L1MC1 LINE L1 5157 6324 -9 415 137 27 0 chr3 23969966 23970033 -203554545 + L1MC1 LINE L1 6254 6328 -5 275 287 108 44 chr3 23970074 23970431 -203554147 + L1ME4a LINE L1 5709 6094 -27 3044 148 49 12 chr3 23970431 23971007 -203553571 - L1MB8 LINE L1 0 6178 5582 275 287 108 44 chr3 23971007 23971036 -203553542 + L1ME4a LINE L1 6094 6120 -1 1279 164 0 22 chr3 23971309 23971540 -203553038 - AluJb SINE Alu -74 238 13 249 203 172 0 chr3 23971547 23971611 -203552967 - MER5A DNA MER1_type -114 75 1 480 329 85 16 chr3 23971751 23971997 -203552581 - L3 LINE CR1 -252 1325 1063 352 293 43 57 chr3 23972507 23972647 -203551931 - L3 LINE CR1 -666 911 774 1236 193 54 51 chr3 23973389 23973672 -203550906 + MLT1E2 LTR MaLR 287 573 -53 333 0 0 0 chr3 23973672 23973709 -203550869 + (TG)n Simple_repeat Simple_repeat 2 38 0 1236 193 54 51 chr3 23973709 23973721 -203550857 + MLT1E2 LTR MaLR 573 583 -43 2051 152 68 86 chr3 23973820 23974288 -203550290 + MLT2B1 LTR ERVL 61 520 0 275 184 0 0 chr3 23974644 23974693 -203549885 + L2 LINE L2 3261 3309 -4 904 288 71 44 chr3 23975016 23975423 -203549155 + MLT1L LTR MaLR 197 614 -1 972 219 45 28 chr3 23975670 23975974 -203548604 - MLT1D LTR MaLR 0 485 200 707 254 82 45 chr3 23976226 23976514 -203548064 - LTR16A1 LTR ERVL -2 455 175 22 0 0 0 chr3 23976740 23976762 -203547816 + AT_rich Low_complexity Low_complexity 1 22 0 1924 189 56 8 chr3 23978126 23978518 -203546060 - MLT2D LTR ERVL -3 411 1 507 294 54 21 chr3 23978520 23978828 -203545750 - L1MC4a LINE L1 -364 5798 5568 612 345 185 18 chr3 23979199 23979907 -203544671 + L3 LINE CR1 92 917 -660 259 371 11 0 chr3 23980574 23980663 -203543915 + L3 LINE CR1 1073 1162 -415 495 283 64 44 chr3 23981066 23981317 -203543261 - MIR SINE MIR -6 256 1 906 204 21 37 chr3 23981854 23981950 -203542628 + MER5A DNA MER1_type 1 94 -95 1548 202 30 48 chr3 23981950 23982346 -203542232 + MLT1B LTR MaLR 2 390 0 906 204 21 37 chr3 23982346 23982440 -203542138 + MER5A DNA MER1_type 94 188 -1 183 175 0 111 chr3 23982620 23982683 -203541895 - L2 LINE L2 -212 3060 3005 4729 173 6 28 chr3 23982811 23983667 -203540911 - MLT1A1-int LTR MaLR -898 837 1 1112 229 29 81 chr3 23983667 23984012 -203540566 - MLT1A1 LTR MaLR 0 365 39 943 189 27 27 chr3 23984035 23984220 -203540358 - MER5A DNA MER1_type -3 186 2 2120 95 3 0 chr3 23985218 23985545 -203539033 + AluSx SINE Alu 1 328 0 626 231 30 0 chr3 23985799 23985933 -203538645 + MIR SINE MIR 82 219 -43 201 74 0 0 chr3 23986815 23986842 -203537736 + (T)n Simple_repeat Simple_repeat 1 27 0 1980 124 7 3 chr3 23987135 23987441 -203537137 + AluSx SINE Alu 1 307 -5 1605 174 33 105 chr3 23987707 23988127 -203536451 + MLT1B LTR MaLR 1 390 0 304 274 130 43 chr3 23988289 23988497 -203536081 + L1ME4a LINE L1 5114 5339 -807 1531 153 94 0 chr3 23988555 23988830 -203535748 - AluJb SINE Alu -11 301 1 619 311 114 21 chr3 23988835 23989405 -203535173 + L1ME4a LINE L1 5445 6067 -54 406 306 75 35 chr3 23989484 23989657 -203534921 + L3 LINE CR1 1297 1476 -101 592 287 196 23 chr3 23989658 23990055 -203534523 - L2 LINE L2 -1 3312 2847 245 280 132 44 chr3 23990089 23990271 -203534307 + MLT1I LTR MaLR 91 288 -121 420 206 82 82 chr3 23990280 23990426 -203534152 + MLT1H LTR MaLR 404 549 0 219 287 69 35 chr3 23992790 23992877 -203531701 - L2 LINE L2 -23 3290 3201 25 0 0 0 chr3 23993015 23993040 -203531538 + AT_rich Low_complexity Low_complexity 1 25 0 321 262 0 12 chr3 23993071 23993155 -203531423 + L1ME3A LINE L1 5781 5863 -307 760 255 43 4 chr3 23993162 23993393 -203531185 + L1ME3A LINE L1 5922 6161 -9 26 0 0 0 chr3 23993799 23993825 -203530753 + AT_rich Low_complexity Low_complexity 1 26 0 287 237 26 0 chr3 23994085 23994161 -203530417 + L1MC5 LINE L1 7320 7397 -564 266 260 33 40 chr3 23994371 23994521 -203530057 + (CAGGG)n Simple_repeat Simple_repeat 1 149 0 497 277 63 0 chr3 23995007 23995166 -203529412 + MIR SINE MIR 73 241 -21 2192 60 7 30 chr3 23996749 23997049 -203527529 + AluY SINE Alu 1 293 -18 896 218 24 24 chr3 23997085 23997291 -203527287 - MER3 DNA MER1_type -3 206 1 347 236 8 65 chr3 23999728 23999851 -203524727 + MER113 DNA MER1_type? 92 207 -314 970 239 94 20 chr3 24000448 24000745 -203523833 - LTR16C LTR ERVL -8 483 165 208 233 14 68 chr3 24002537 24002610 -203521968 - MIR SINE MIR -144 118 50 318 292 21 10 chr3 24003759 24003855 -203520723 + MIR SINE MIR 126 222 -40 285 248 154 17 chr3 24004555 24004672 -203519906 - MIR SINE MIR -21 241 109 271 240 116 54 chr3 24005552 24005681 -203518897 + MIR3 SINE MIR 7 143 -65 533 267 129 56 chr3 24007724 24007956 -203516622 - MIR SINE MIR 0 262 14 357 349 78 10 chr3 24008474 24008666 -203515912 + MIR SINE MIR 6 210 -52 1308 128 5 0 chr3 24008925 24009113 -203515465 + MER5A DNA MER1_type 1 189 0 540 221 88 0 chr3 24009115 24009228 -203515350 + L2 LINE L2 3191 3313 0 186 255 133 51 chr3 24009318 24009416 -203515162 - L2 LINE L2 -8 3305 3200 271 219 126 17 chr3 24009570 24009689 -203514889 + L1ME4a LINE L1 5987 6118 -3 233 327 36 82 chr3 24009973 24010193 -203514385 - L2 LINE L2 -258 3014 2805 437 266 18 0 chr3 24010487 24010596 -203513982 - L1ME LINE L1 -454 5667 5557 351 303 41 14 chr3 24010838 24010983 -203513595 + L2 LINE L2 2130 2278 -1036 24 0 0 0 chr3 24011902 24011926 -203512652 + AT_rich Low_complexity Low_complexity 1 24 0 2283 143 60 18 chr3 24012259 24012658 -203511920 + MLT2C2 LTR ERVL 1 416 -48 1210 159 10 5 chr3 24013063 24013271 -203511307 - MER3 DNA MER1_type 0 209 1 359 303 9 4 chr3 24013832 24013957 -203510621 + MIR SINE MIR 30 154 -62 1148 206 35 9 chr3 24014665 24014909 -203509669 - MIR SINE MIR -5 257 8 199 304 113 26 chr3 24014953 24015147 -203509431 - L2 LINE L2 -481 2833 2623 361 209 15 0 chr3 24015322 24015389 -203509189 + MER94 DNA DNA 64 131 -3 369 0 0 0 chr3 24015928 24015969 -203508609 + (TC)n Simple_repeat Simple_repeat 2 42 0 454 300 0 0 chr3 24016610 24016730 -203507848 + L2 LINE L2 3194 3313 0 209 294 59 12 chr3 24016854 24016939 -203507639 - MIR3 SINE MIR -32 176 88 1354 221 58 29 chr3 24018058 24018578 -203506000 + MLT1G1 LTR MaLR 1 542 0 237 336 9 0 chr3 24019403 24019510 -203505068 + (CCA)n Simple_repeat Simple_repeat 3 110 0 22 35 0 0 chr3 24019643 24019672 -203504906 + AT_rich Low_complexity Low_complexity 1 29 0 225 245 0 0 chr3 24020151 24020200 -203504378 - MIR3 SINE MIR -2 206 158 243 0 0 0 chr3 24020215 24020242 -203504336 + (T)n Simple_repeat Simple_repeat 1 27 0 207 182 39 0 chr3 24020907 24020984 -203503594 + (TA)n Simple_repeat Simple_repeat 1 80 0 225 87 130 0 chr3 24020989 24021035 -203503543 - L1MC4 LINE L1 -1340 6702 6651 181 167 0 0 chr3 24021338 24021374 -203503204 - L2 LINE L2 -2 3270 3235 180 0 0 0 chr3 24021398 24021418 -203503160 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 184 319 35 86 chr3 24021425 24021657 -203502921 - L2 LINE L2 -126 3187 2968 2278 98 0 10 chr3 24021991 24022298 -203502280 - AluY SINE Alu -7 304 1 1763 170 3 38 chr3 24022424 24022741 -203501837 + AluJo SINE Alu 1 306 -6 911 215 196 32 chr3 24022749 24023065 -203501513 + L1ME3A LINE L1 5796 6163 -7 21 0 0 0 chr3 24023423 24023444 -203501134 + AT_rich Low_complexity Low_complexity 1 21 0 621 231 178 0 chr3 24023706 24023787 -203500791 + Charlie5 DNA MER1_type 2 67 -2557 1610 138 4 28 chr3 24023787 24024040 -203500538 - AluJo SINE Alu -17 295 49 621 231 178 0 chr3 24024040 24024127 -203500451 + Charlie5 DNA MER1_type 67 200 -2424 313 138 138 0 chr3 24024125 24024183 -203500395 + Charlie5 DNA MER1_type 2352 2417 -195 * 240 194 0 0 chr3 24024180 24024216 -203500362 - AluJo SINE Alu -250 52 17 * 576 174 78 50 chr3 24024205 24024423 -203500155 + Charlie5 DNA MER1_type 2382 2605 -7 22 35 0 0 chr3 24024608 24024637 -203499941 + AT_rich Low_complexity Low_complexity 1 29 0 424 167 0 0 chr3 24024637 24024703 -203499875 - AluJ/FRAM SINE Alu -21 291 226 2453 101 0 0 chr3 24025120 24025426 -203499152 + AluSq SINE Alu 1 306 -7 2274 150 95 35 chr3 24025446 24025939 -203498639 + L1MA9 LINE L1 5752 6274 -38 224 122 24 0 chr3 24026112 24026153 -203498425 + CT-rich Low_complexity Low_complexity 1 42 0 237 198 27 117 chr3 24026215 24026300 -203498278 + MER103 DNA DNA 20 94 -72 2532 55 7 7 chr3 24026300 24026609 -203497969 + AluSg SINE Alu 1 309 -1 237 198 27 117 chr3 24026609 24026634 -203497944 + MER103 DNA DNA 94 120 -46 24 0 0 0 chr3 24027596 24027620 -203496958 + AT_rich Low_complexity Low_complexity 1 24 0 217 281 255 42 chr3 24027819 24028587 -203495991 + L2 LINE L2 1977 2908 -406 1559 153 36 68 chr3 24029367 24029675 -203494903 + AluJb SINE Alu 3 300 -12 297 351 87 5 chr3 24029738 24029946 -203494632 + L2 LINE L2 1832 2056 -1258 284 198 143 11 chr3 24029958 24030049 -203494529 + MER5C DNA MER1_type 222 324 0 289 290 21 0 chr3 24030165 24030258 -203494320 + Charlie8 DNA MER1_type 157 251 -2166 503 258 92 37 chr3 24031577 24031794 -203492784 + MIR SINE MIR 3 231 -31 541 80 16 59 chr3 24031910 24032097 -203492481 + (TTATA)n Simple_repeat Simple_repeat 1 179 0 * 584 44 116 0 chr3 24032086 24032406 -203492172 + (TA)n Simple_repeat Simple_repeat 1 357 0 503 181 169 46 chr3 24034613 24034658 -203489920 - LTR37B LTR ERV1 -2 466 428 874 171 127 0 chr3 24034658 24034839 -203489739 - MER6B DNA MER2_type -3 207 4 503 181 169 46 chr3 24034839 24035030 -203489548 - LTR37B LTR ERV1 -40 428 201 1731 163 3 39 chr3 24035186 24035492 -203489086 - AluJo SINE Alu -17 295 1 190 221 91 13 chr3 24036327 24036404 -203488174 + L2 LINE L2 3221 3303 -10 184 224 53 40 chr3 24036624 24036700 -203487878 + L2 LINE L2 3221 3297 -16 1128 105 13 0 chr3 24037533 24037685 -203486893 - AluSq SINE Alu -26 287 134 2374 80 0 7 chr3 24037685 24037985 -203486593 - AluSx SINE Alu -12 300 3 24 0 0 0 chr3 24037991 24038015 -203486563 + AT_rich Low_complexity Low_complexity 1 24 0 423 0 0 0 chr3 24038213 24038260 -203486318 + (CA)n Simple_repeat Simple_repeat 2 48 0 24 0 0 0 chr3 24038509 24038533 -203486045 + AT_rich Low_complexity Low_complexity 1 24 0 1998 245 116 8 chr3 24040573 24041107 -203483471 + MLT1E LTR MaLR 1 592 -1 464 243 14 14 chr3 24041859 24042003 -203482575 + MIR SINE MIR 76 219 -43 1644 247 99 99 chr3 24042107 24042325 -203482253 - L2 LINE L2 0 3313 3096 2271 123 10 0 chr3 24042325 24042634 -203481944 + AluSx SINE Alu 1 312 0 1644 247 99 99 chr3 24042634 24043397 -203481181 - L2 LINE L2 -217 3096 2285 227 200 71 29 chr3 24043397 24043467 -203481111 - L1MC4 LINE L1 -1322 6720 6648 1644 247 99 99 chr3 24043467 24043771 -203480807 - L2 LINE L2 -1028 2285 1982 1207 178 54 8 chr3 24044371 24044612 -203479966 + L1MD3 LINE L1 7721 7972 -23 920 93 0 0 chr3 24044868 24044997 -203479581 - L1MB4 LINE L1 0 6180 6052 1799 139 60 30 chr3 24044998 24045300 -203479278 - AluJb SINE Alu -1 311 1 1510 143 9 0 chr3 24045784 24046007 -203478571 - AluJb SINE Alu -87 225 1 727 183 41 71 chr3 24048616 24048785 -203475793 + MER3 DNA MER1_type 27 190 -19 596 180 152 0 chr3 24048813 24048967 -203475611 - MER5A DNA MER1_type -5 184 4 257 226 29 29 chr3 24049077 24049179 -203475399 - Charlie7 DNA MER1_type -99 2513 2412 955 262 151 66 chr3 24049191 24049347 -203475231 - Charlie7 DNA MER1_type -1919 693 552 2433 86 0 3 chr3 24049347 24049650 -203474928 - AluSc SINE Alu -7 302 1 955 262 151 66 chr3 24049650 24050055 -203474523 - Charlie7 DNA MER1_type -2060 552 84 2449 71 0 7 chr3 24050349 24050644 -203473934 + AluSc SINE Alu 1 293 -16 340 322 69 39 chr3 24050652 24050885 -203473693 + L1M4 LINE L1 4724 4963 -1183 2390 81 0 7 chr3 24050885 24051181 -203473397 + AluY SINE Alu 1 294 -17 915 202 67 19 chr3 24051213 24051421 -203473157 + MER20 DNA MER1_type 1 218 -1 345 24 0 0 chr3 24054661 24054703 -203469875 + (TG)n Simple_repeat Simple_repeat 2 43 0 409 123 0 15 chr3 24055168 24055233 -203469345 + Charlie8 DNA MER1_type 114 177 -2240 191 283 17 0 chr3 24057635 24057695 -203466883 + L2 LINE L2 3210 3270 -2 1751 186 7 3 chr3 24058105 24058412 -203466166 - AluJo SINE Alu -4 308 1 301 285 18 42 chr3 24059060 24059225 -203465353 - MIR3 SINE MIR -37 171 11 453 243 151 0 chr3 24059328 24059480 -203465098 + MER5A DNA MER1_type 9 183 -6 464 327 118 0 chr3 24059903 24060123 -203464455 + MIR SINE MIR 16 261 -1 1917 177 0 0 chr3 24060236 24060546 -203464032 + AluJb SINE Alu 1 310 -2 845 167 0 0 chr3 24060556 24060688 -203463890 + FLAM_C SINE Alu 2 133 0 27 0 0 0 chr3 24061174 24061201 -203463377 + AT_rich Low_complexity Low_complexity 1 27 0 1508 164 47 37 chr3 24062242 24062362 -203462216 + AluJb SINE Alu 1 118 -194 315 0 0 0 chr3 24062362 24062397 -203462181 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1508 164 47 37 chr3 24062397 24062575 -203462003 + AluJb SINE Alu 118 302 -10 250 220 34 0 chr3 24062646 24062705 -203461873 + GA-rich Low_complexity Low_complexity 2 62 0 398 230 168 97 chr3 24063005 24063287 -203461291 - L1MC4a LINE L1 -1635 6173 5856 2319 104 0 3 chr3 24063287 24063595 -203460983 + AluSq SINE Alu 1 307 -6 398 230 168 97 chr3 24063595 24063694 -203460884 - L1MC4a LINE L1 -1952 5856 5765 303 240 126 113 chr3 24063695 24063816 -203460762 - L1MC4a LINE L1 -2082 5726 5608 616 63 0 0 chr3 24063816 24063895 -203460683 + L1MA3 LINE L1 6225 6303 -2 303 240 126 113 chr3 24063895 24063918 -203460660 - L1MC4a LINE L1 -2200 5608 5587 254 93 0 23 chr3 24063918 24063961 -203460617 + (TA)n Simple_repeat Simple_repeat 2 43 0 303 240 126 113 chr3 24063961 24064282 -203460296 - L1MC4a LINE L1 -2221 5587 5254 699 142 0 0 chr3 24064359 24064465 -203460113 - AluSg/x SINE Alu -14 295 190 306 349 115 0 chr3 24064470 24064662 -203459916 - L1MC4a LINE L1 -979 5167 4954 392 336 74 45 chr3 24064769 24065216 -203459362 - L1MC4a LINE L1 -1344 4802 4343 1366 148 0 14 chr3 24065431 24065648 -203458930 + AluJb SINE Alu 55 268 -44 252 0 0 0 chr3 24065652 24065680 -203458898 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 401 195 91 0 chr3 24065680 24065757 -203458821 + MER96B DNA MER1_type? 170 253 -164 2237 125 0 3 chr3 24066304 24066616 -203457962 + AluSx SINE Alu 2 312 0 244 258 22 67 chr3 24066680 24066769 -203457809 + MIR SINE MIR 119 203 -59 294 290 58 72 chr3 24067402 24067540 -203457038 + MIR3 SINE MIR 72 207 -1 1204 152 0 0 chr3 24068259 24068437 -203456141 - AluSg/x SINE Alu -66 246 69 302 250 136 50 chr3 24068695 24068835 -203455743 - Charlie8 DNA MER1_type -2244 173 22 234 192 0 0 chr3 24069300 24069352 -203455226 + A-rich Low_complexity Low_complexity 1 52 0 279 0 0 0 chr3 24070130 24070161 -203454417 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 1221 181 0 27 chr3 24070199 24070420 -203454158 - L1MB5 LINE L1 0 6174 5960 5557 161 17 14 chr3 24070463 24071478 -203453100 - L1MA9 LINE L1 -39 6273 5257 329 0 24 0 chr3 24071744 24071785 -203452793 + (CA)n Simple_repeat Simple_repeat 2 43 0 4815 144 27 1 chr3 24072390 24073125 -203451453 + MER6 DNA MER2_type 111 864 -1 237 226 19 0 chr3 24073286 24073339 -203451239 + GA-rich Low_complexity Low_complexity 2 55 0 262 209 0 22 chr3 24073393 24073484 -203451094 + CT-rich Low_complexity Low_complexity 2 90 0 342 0 0 0 chr3 24073484 24073522 -203451056 + (CA)n Simple_repeat Simple_repeat 1 38 0 1630 147 45 13 chr3 24073533 24073845 -203450733 + MER33 DNA MER1_type 3 324 0 588 153 110 0 chr3 24074304 24074422 -203450156 - L1MB3 LINE L1 -7 6176 6046 301 281 0 0 chr3 24075952 24076016 -203448562 + polypyrimidine Low_complexity Low_complexity 1 64 0 1366 162 54 17 chr3 24076017 24076314 -203448264 + MER33 DNA MER1_type 17 324 0 693 289 70 0 chr3 24077328 24077529 -203447049 + MIR SINE MIR 32 246 -16 495 321 58 47 chr3 24078913 24079256 -203445322 - L2 LINE L2 -961 2353 2007 4051 167 79 9 chr3 24079534 24080218 -203444360 - MER44D DNA MER2_type -1 604 1 800 281 66 4 chr3 24081002 24081244 -203443334 - MIR SINE MIR 0 262 6 280 331 99 7 chr3 24081256 24081398 -203443180 - MIR3 SINE MIR -45 163 9 232 155 24 179 chr3 24082349 24082433 -203442145 + MER5A DNA MER1_type 35 105 -84 275 259 15 44 chr3 24082474 24082609 -203441969 + MER117 DNA MER1_type 32 162 -35 261 330 53 0 chr3 24082807 24082901 -203441677 + L2 LINE L2 3209 3307 -6 588 165 0 33 chr3 24084579 24084700 -203439878 - Charlie1 DNA MER1_type -25 2736 2620 * 822 202 187 5 chr3 24084688 24084886 -203439692 - Charlie1 DNA MER1_type -2527 234 1 601 271 181 0 chr3 24085257 24085478 -203439100 + MIR SINE MIR 2 262 0 1539 176 15 112 chr3 24085769 24086172 -203438406 + MLT1A1 LTR MaLR 2 365 0 283 299 15 0 chr3 24086173 24086240 -203438338 - L2 LINE L2 -17 3255 3188 1865 157 20 3 chr3 24086931 24087231 -203437347 - AluJb SINE Alu -7 305 1 863 173 46 12 chr3 24087416 24087589 -203436989 + AluJo SINE Alu 101 279 -33 26 64 0 0 chr3 24087594 24087641 -203436937 + AT_rich Low_complexity Low_complexity 1 47 0 213 233 0 0 chr3 24089414 24089457 -203435121 + (CATATA)n Simple_repeat Simple_repeat 6 48 0 861 254 18 5 chr3 24090058 24090278 -203434300 + MIR SINE MIR 10 232 -30 1367 207 127 55 chr3 24090329 24090787 -203433791 + MLT1D LTR MaLR 15 505 0 752 250 54 92 chr3 24091124 24091831 -203432747 - L1ME LINE L1 -4981 1089 545 1286 156 8 63 chr3 24092628 24092865 -203431713 + MER58A DNA MER1_type 1 224 0 324 0 0 0 chr3 24093420 24093456 -203431122 + (CA)n Simple_repeat Simple_repeat 2 37 0 259 224 0 0 chr3 24094752 24094810 -203429768 + (CA)n Simple_repeat Simple_repeat 2 59 0 217 205 0 0 chr3 24095757 24095796 -203428782 + GA-rich Low_complexity Low_complexity 2 40 0 180 0 0 0 chr3 24096630 24096650 -203427928 + (A)n Simple_repeat Simple_repeat 1 20 0 594 272 214 0 chr3 24097126 24097332 -203427246 + MIR SINE MIR 13 262 0 287 273 11 23 chr3 24097944 24098032 -203426546 - MIR SINE MIR -77 131 45 186 262 0 0 chr3 24098096 24098138 -203426440 + MIR SINE MIR 107 148 -114 2761 233 57 16 chr3 24098152 24098221 -203426357 + L1ME LINE L1 7 72 -5998 249 83 0 0 chr3 24098221 24098257 -203426321 + (CA)n Simple_repeat Simple_repeat 1 36 0 222 37 0 0 chr3 24098259 24098286 -203426292 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 2761 233 57 16 chr3 24098286 24098948 -203425630 + L1ME LINE L1 72 771 -5299 607 299 87 9 chr3 24099292 24099523 -203425055 + MIR SINE MIR 1 249 -13 217 364 13 0 chr3 24099539 24099616 -203424962 - MIR SINE MIR -86 122 45 22 35 0 0 chr3 24099788 24099817 -203424761 + AT_rich Low_complexity Low_complexity 1 29 0 210 222 52 111 chr3 24100838 24100973 -203423605 + MIR3 SINE MIR 12 138 -70 2104 132 0 19 chr3 24101387 24101705 -203422873 - AluSx SINE Alu 0 312 1 210 250 0 0 chr3 24102010 24102050 -203422528 - MIR SINE MIR -57 151 112 393 239 130 93 chr3 24102123 24102370 -203422208 - MIR SINE MIR 0 262 7 1451 278 45 47 chr3 24102829 24102913 -203421665 + ERVL LTR ERVL 4750 4833 -931 2422 158 82 2 chr3 24102913 24103313 -203421265 + MSTB1 LTR MaLR 1 432 0 1451 278 45 47 chr3 24103313 24103779 -203420799 + ERVL LTR ERVL 4833 5299 -465 337 260 164 7 chr3 24104066 24104212 -203420366 + LTR50 LTR ERVL 1 169 -626 689 276 88 57 chr3 24104302 24104654 -203419924 - L2 LINE L2 0 3313 2951 419 191 22 11 chr3 24106079 24106168 -203418410 + LTR16A1 LTR ERVL 55 144 -313 691 194 39 0 chr3 24106330 24106459 -203418119 - MIR SINE MIR -116 146 13 1928 177 60 93 chr3 24106514 24107061 -203417517 - MLT1F1 LTR MaLR -13 554 3 258 276 138 0 chr3 24108037 24108124 -203416454 + L2 LINE L2 3215 3313 0 438 94 0 0 chr3 24108965 24109029 -203415549 + (CA)n Simple_repeat Simple_repeat 2 65 0 368 307 31 8 chr3 24110528 24110655 -203413923 + MIR SINE MIR 18 147 -115 221 149 21 21 chr3 24111507 24111554 -203413024 - MER5B DNA MER1_type -85 93 47 1266 158 0 0 chr3 24111794 24111978 -203412600 + MER5A DNA MER1_type 5 188 -1 253 214 38 114 chr3 24112805 24112936 -203411642 + MIR SINE MIR 80 200 -62 1542 175 41 16 chr3 24112995 24113315 -203411263 + L1ME1 LINE L1 5521 5848 -318 1146 213 108 20 chr3 24113480 24113785 -203410793 + L1ME1 LINE L1 5830 6161 -5 248 335 145 19 chr3 24114159 24114532 -203410046 + L2 LINE L2 2546 2965 -349 936 174 60 65 chr3 24114775 24115190 -203409388 + MLT1A2 LTR MaLR 1 374 0 267 304 59 0 chr3 24115193 24115288 -203409290 + L2 LINE L2 3173 3272 0 1057 170 26 10 chr3 24115421 24115615 -203408963 + MER3 DNA MER1_type 13 209 0 2257 84 13 0 chr3 24116099 24116397 -203408181 - AluSp SINE Alu -11 302 1 349 289 41 8 chr3 24116699 24116820 -203407758 + MIR SINE MIR 39 163 -99 1388 209 94 44 chr3 24116820 24117134 -203407444 + L1ME1 LINE L1 5644 5996 -166 1990 134 0 0 chr3 24117134 24117425 -203407153 + AluSx SINE Alu 1 291 -21 1388 209 94 44 chr3 24117425 24117597 -203406981 + L1ME1 LINE L1 5996 6158 -4 2041 135 0 0 chr3 24117630 24117934 -203406644 + AluSx SINE Alu 7 310 -2 832 263 41 7 chr3 24118593 24118895 -203405683 + L1ME4a LINE L1 5569 5897 -224 1020 217 114 48 chr3 24118908 24119423 -203405155 - L2 LINE L2 -4 3309 2713 245 50 0 25 chr3 24119748 24119788 -203404790 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 182 261 43 0 chr3 24120334 24120380 -203404198 - L2 LINE L2 -15 3257 3210 * 502 278 52 77 chr3 24120348 24120542 -203404036 - MIR SINE MIR -25 237 49 183 313 16 0 chr3 24120829 24120893 -203403685 + L2 LINE L2 3192 3256 -16 478 228 14 83 chr3 24121140 24121234 -203403344 + Charlie8 DNA MER1_type 9 91 -250 2305 71 0 3 chr3 24121234 24121529 -203403049 - AluSx SINE Alu -16 296 3 478 228 14 83 chr3 24121529 24121579 -203402999 + Charlie8 DNA MER1_type 91 143 -198 661 244 137 0 chr3 24123730 24123898 -203400680 - MER91A DNA MER1_type -5 191 1 2676 256 56 22 chr3 24123967 24124131 -203400447 + L1ME3A LINE L1 5079 5236 -934 830 224 71 5 chr3 24124131 24124327 -203400251 + MER63A DNA MER1_type 2 210 0 2676 256 56 22 chr3 24124327 24125224 -203399354 + L1ME3A LINE L1 5236 6170 0 879 241 200 11 chr3 24126140 24126505 -203398073 + MER57B LTR ERV1 1 434 0 774 254 198 47 chr3 24127190 24127659 -203396919 + MLT1G1 LTR MaLR 4 543 -24 881 196 6 6 chr3 24127761 24127924 -203396654 - L1MC/D LINE L1 -591 5768 5606 183 80 0 0 chr3 24128770 24128795 -203395783 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 291 226 129 0 chr3 24128795 24128888 -203395690 - L2 LINE L2 -13 3259 3155 775 231 6 0 chr3 24128977 24129133 -203395445 + AluJo SINE Alu 125 281 -31 207 69 0 0 chr3 24129141 24129170 -203395408 + (CA)n Simple_repeat Simple_repeat 2 30 0 364 284 43 72 chr3 24129872 24130080 -203394498 + L1ME4a LINE L1 5851 6052 -69 1393 125 40 98 chr3 24130115 24130411 -203394167 + AluJb SINE Alu 33 311 -1 2469 177 107 4 chr3 24130436 24130922 -203393656 + MLT1F LTR MaLR 7 542 0 294 185 0 0 chr3 24130991 24131045 -203393533 + MLT1G1 LTR MaLR 512 565 -2 543 226 168 0 chr3 24131217 24131372 -203393206 + MER5A DNA MER1_type 9 189 0 646 208 195 0 chr3 24131380 24131529 -203393049 + MER5B DNA MER1_type 1 178 0 2718 204 45 7 chr3 24132052 24132612 -203391966 - MER119 DNA MER1_type 0 583 3 2142 139 25 70 chr3 24133397 24133828 -203390750 - MLT2D LTR ERVL -2 412 1 899 281 28 61 chr3 24133870 24134261 -203390317 - L2 LINE L2 0 3313 2936 305 274 68 0 chr3 24134304 24134421 -203390157 - L2 LINE L2 -471 2843 2719 779 254 203 4 chr3 24134456 24134732 -203389846 - L2 LINE L2 -728 2586 2256 205 340 90 0 chr3 24134757 24134857 -203389721 + L2 LINE L2 3145 3253 -19 847 218 86 49 chr3 24134963 24135206 -203389372 + MIR SINE MIR 1 252 -10 444 123 0 0 chr3 24135598 24135671 -203388907 + (CA)n Simple_repeat Simple_repeat 2 74 0 960 156 0 0 chr3 24135682 24135862 -203388716 + (CA)n Simple_repeat Simple_repeat 1 180 0 291 54 0 0 chr3 24136685 24136722 -203387856 + (CA)n Simple_repeat Simple_repeat 1 37 0 1087 167 24 29 chr3 24136852 24137062 -203387516 + MER3 DNA MER1_type 1 209 0 507 274 92 6 chr3 24137391 24137555 -203387023 + MIR SINE MIR 85 262 0 243 276 0 61 chr3 24137782 24137880 -203386698 - L2 LINE L2 -6 3307 3216 263 179 75 60 chr3 24138419 24138486 -203386092 + L3b LINE CR1 1430 1497 -86 2125 207 56 78 chr3 24138633 24139291 -203385287 + L1ME2 LINE L1 5511 6154 -10 236 179 179 24 chr3 24139456 24139540 -203385038 + L1MC4 LINE L1 7929 8025 -17 30 77 0 0 chr3 24141673 24141738 -203382840 + GC_rich Low_complexity Low_complexity 1 65 0 532 276 0 0 chr3 24142419 24142535 -203382043 + MIR SINE MIR 5 120 -142 276 152 0 0 chr3 24143619 24143665 -203380913 + L2 LINE L2 3268 3313 0 243 0 0 0 chr3 24145264 24145291 -203379287 + (A)n Simple_repeat Simple_repeat 1 27 0 1129 276 53 18 chr3 24146587 24146982 -203377596 + MLT1I LTR MaLR 1 409 0 455 258 16 16 chr3 24147160 24147284 -203377294 - L2 LINE L2 0 3313 3190 280 329 14 71 chr3 24147299 24147439 -203377139 - MIR3 SINE MIR -68 140 9 301 226 0 0 chr3 24147582 24147644 -203376934 + L2 LINE L2 3210 3271 -1 549 324 74 34 chr3 24148191 24148487 -203376091 + L1ME LINE L1 20 327 -5743 214 260 0 0 chr3 24149423 24149473 -203375105 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 368 302 8 8 chr3 24150191 24150317 -203374261 - LTR67 LTR ERVL 0 557 432 773 267 124 50 chr3 24150330 24150791 -203373787 + MLT1H1 LTR MaLR 35 535 -20 2632 136 29 10 chr3 24150791 24151209 -203373369 - MSTB LTR MaLR 0 426 1 773 267 124 50 chr3 24151209 24151230 -203373348 + MLT1H1 LTR MaLR 535 553 -2 625 266 25 19 chr3 24152301 24152494 -203372084 - MLT1G1 LTR MaLR -6 587 372 270 138 32 32 chr3 24152499 24152593 -203371985 + CT-rich Low_complexity Low_complexity 2 95 0 998 234 63 23 chr3 24152598 24152897 -203371681 - MLT1G1 LTR MaLR -284 311 1 829 232 25 51 chr3 24152897 24153219 -203371359 - LTR16A1 LTR ERVL -7 450 81 1311 248 35 64 chr3 24153490 24153942 -203370636 - MLT1K LTR MaLR -58 530 92 308 282 35 114 chr3 24154432 24154687 -203369891 + L3b LINE CR1 1151 1385 -198 263 242 61 10 chr3 24154892 24154991 -203369587 - MLT1L LTR MaLR 0 615 512 290 269 144 38 chr3 24155055 24155215 -203369363 - MLT1L LTR MaLR -228 387 211 534 314 64 70 chr3 24155489 24155945 -203368633 + MLT1K LTR MaLR 133 585 -3 357 246 27 27 chr3 24156294 24156404 -203368174 + MIR3 SINE MIR 97 206 -2 235 239 303 0 chr3 24156401 24156510 -203368068 - MIR3 SINE MIR -44 164 23 * 465 281 6 31 chr3 24157300 24157460 -203367118 + MER112 DNA MER1_type 6 161 -99 1376 174 26 40 chr3 24157487 24157791 -203366787 - AluJo SINE Alu -8 304 5 870 290 61 43 chr3 24158075 24158516 -203366062 - LTR16B LTR ERVL -15 449 1 423 287 141 61 chr3 24158546 24159319 -203365259 - L2 LINE L2 -2 3270 2453 289 278 74 37 chr3 24160276 24160384 -203364194 + L2 LINE L2 3202 3313 0 364 310 48 83 chr3 24160458 24160687 -203363891 - L1MC4 LINE L1 -1 8041 7821 4350 143 26 1 chr3 24160741 24161476 -203363102 - L1MB3 LINE L1 -4 6179 5427 1379 134 104 5 chr3 24161504 24161840 -203362738 - LTR47A LTR ERVL 0 452 1 * 2213 160 27 3 chr3 24161840 24162207 -203362371 - MSTB1 LTR MaLR -40 392 17 257 86 0 0 chr3 24162226 24162261 -203362317 - MSTB LTR MaLR -379 53 19 294 54 0 0 chr3 24162282 24162319 -203362259 - MSTB LTR MaLR -373 53 17 257 86 0 0 chr3 24162310 24162345 -203362233 - MSTB1 LTR MaLR -379 53 19 * 258 62 0 0 chr3 24162338 24162370 -203362208 - MSTB1 LTR MaLR -373 53 22 283 167 0 19 chr3 24162394 24162448 -203362130 - MSTB1 LTR MaLR -379 53 1 885 98 0 8 chr3 24162448 24162581 -203361997 - L1MB3 LINE L1 -734 5449 5318 1809 184 103 29 chr3 24162586 24163004 -203361574 - L1ME2 LINE L1 -10 6154 5706 343 292 180 25 chr3 24163130 24163291 -203361287 - MIR SINE MIR -14 248 63 2146 90 3 10 chr3 24163550 24163850 -203360728 + AluSg SINE Alu 1 298 -12 1740 233 42 22 chr3 24164101 24164552 -203360026 + MLT1J LTR MaLR 24 483 -28 188 255 21 0 chr3 24164553 24164600 -203359978 - MIR SINE MIR -96 166 119 406 253 167 19 chr3 24164833 24164995 -203359583 + MIR SINE MIR 77 262 0 284 48 24 0 chr3 24165752 24165794 -203358784 + (TA)n Simple_repeat Simple_repeat 2 44 0 31 26 0 0 chr3 24165806 24165844 -203358734 + AT_rich Low_complexity Low_complexity 1 38 0 658 99 44 0 chr3 24165844 24166121 -203358457 + (TA)n Simple_repeat Simple_repeat 1 289 0 324 289 75 62 chr3 24165844 24166111 -203358467 - L1M4 LINE L1 -1621 4522 4214 * 334 277 11 43 chr3 24166081 24166175 -203358403 - L1MC4 LINE L1 -1340 6702 6612 * 372 200 14 14 chr3 24166121 24166191 -203358387 + L1MCa LINE L1 1995 2064 -4362 349 273 0 40 chr3 24166176 24166275 -203358303 - L1MC4 LINE L1 -1339 6703 6609 * 313 131 47 0 chr3 24166193 24166275 -203358303 + (TA)n Simple_repeat Simple_repeat 1 112 0 * 25 0 0 0 chr3 24166275 24166300 -203358278 + AT_rich Low_complexity Low_complexity 1 25 0 262 241 160 0 chr3 24167167 24167287 -203357291 + MIR SINE MIR 100 246 -16 21 0 0 0 chr3 24167289 24167310 -203357268 + AT_rich Low_complexity Low_complexity 1 21 0 436 335 56 37 chr3 24168246 24168461 -203356117 - L2 LINE L2 -527 2787 2569 1738 181 0 23 chr3 24170024 24170334 -203354244 - AluJo SINE Alu -9 303 1 338 253 42 58 chr3 24170871 24171061 -203353517 - MLT1J LTR MaLR 0 511 325 1631 232 21 22 chr3 24171066 24171600 -203352978 - MER119 DNA MER1_type 0 583 1 278 239 0 0 chr3 24172323 24172390 -203352188 + MER116 DNA Mariner 8 74 -6 230 250 26 26 chr3 24173048 24173124 -203351454 + MIR SINE MIR 56 131 -131 1956 52 16 0 chr3 24173913 24174164 -203350414 + L1PA6 LINE L1 5898 6152 -2 614 233 0 32 chr3 24174454 24174634 -203349944 + MIR SINE MIR 33 203 -59 306 278 83 49 chr3 24174692 24174836 -203349742 - L3 LINE CR1 -6 1571 1423 1270 264 70 22 chr3 24175798 24176295 -203348283 + MLT1L LTR MaLR 1 521 -94 625 240 180 11 chr3 24176301 24176484 -203348094 + MIR SINE MIR 12 225 -37 2269 173 44 21 chr3 24176615 24177134 -203347444 + L1M4 LINE L1 5285 5815 -359 446 319 157 20 chr3 24177145 24177439 -203347139 + L1M4 LINE L1 4358 4723 -1423 658 175 16 48 chr3 24177439 24177565 -203347013 + FLAM_A SINE Alu 1 122 -11 446 319 157 20 chr3 24177565 24177671 -203346907 + L1M4 LINE L1 4723 4813 -1333 254 254 15 0 chr3 24177845 24177912 -203346666 - MLT1J2 LTR MaLR -323 127 60 251 273 45 0 chr3 24179099 24179165 -203345413 + MIR SINE MIR 78 146 -62 1018 146 6 24 chr3 24179219 24179384 -203345194 + AluJo SINE Alu 1 162 -150 573 133 16 45 chr3 24179422 24179689 -203344889 + GA-rich Low_complexity Low_complexity 1 259 0 355 228 193 0 chr3 24180483 24180597 -203343981 + MIR3 SINE MIR 14 149 -59 316 227 173 18 chr3 24180790 24180900 -203343678 - L2 LINE L2 -4 3309 3183 818 178 0 6 chr3 24180911 24181080 -203343498 + GA-rich Low_complexity Low_complexity 1 168 0 360 236 109 0 chr3 24181080 24181190 -203343388 - MER63 DNA MER1_type -314 748 1 360 296 90 43 chr3 24181203 24181480 -203343098 - L2 LINE L2 -553 2761 2472 298 274 27 14 chr3 24181474 24181547 -203343031 - L2 LINE L2 -62 3210 3137 * 405 243 109 62 chr3 24182124 24182470 -203342108 + MLT1H LTR MaLR 66 549 0 294 100 0 20 chr3 24182583 24182633 -203341945 + LTR8A LTR ERV1 1 49 -678 421 223 107 0 chr3 24182649 24182752 -203341826 + MER50 LTR ERV1 8 121 -613 2021 153 0 0 chr3 24182768 24183062 -203341516 + AluJb SINE Alu 3 296 -16 4206 127 44 3 chr3 24183067 24183750 -203340828 + MER50 LTR ERV1 1 711 -23 274 44 44 0 chr3 24183751 24183796 -203340782 + L1MB4 LINE L1 6133 6179 -1 1339 200 47 75 chr3 24183803 24184359 -203340219 + L1ME1 LINE L1 1849 2388 -4008 622 158 0 0 chr3 24184377 24184472 -203340106 - AluS SINE Alu -218 95 1 1177 223 71 103 chr3 24184564 24184866 -203339712 + MER76 LTR ERV 24 334 -354 1732 57 80 69 chr3 24184866 24185128 -203339450 - AluSc SINE Alu -44 265 1 1177 223 71 103 chr3 24185128 24185485 -203339093 + MER76 LTR ERV 334 662 -26 4931 217 40 32 chr3 24185488 24186373 -203338205 + L1ME1 LINE L1 2397 3274 -2941 2145 120 3 13 chr3 24186373 24186689 -203337889 + AluSq SINE Alu 1 313 0 4931 217 40 32 chr3 24186689 24186928 -203337650 + L1ME1 LINE L1 3274 3510 -2705 1971 129 14 7 chr3 24186928 24187214 -203337364 + AluSx SINE Alu 1 288 -24 4931 217 40 32 chr3 24187214 24187757 -203336821 + L1ME1 LINE L1 3510 4077 -2138 2104 159 36 29 chr3 24187757 24188306 -203336272 + MLT2A2 LTR ERVL 1 554 0 4797 189 77 15 chr3 24188306 24189105 -203335473 + L1ME1 LINE L1 4073 4821 -1414 222 37 0 0 chr3 24189105 24189132 -203335446 + (TG)n Simple_repeat Simple_repeat 2 28 0 4797 189 77 15 chr3 24189132 24190361 -203334217 + L1ME1 LINE L1 4821 6226 -9 4354 132 26 25 chr3 24190370 24190478 -203334100 + L1 LINE L1 3952 4058 -2088 2582 58 0 22 chr3 24190478 24190791 -203333787 + AluY SINE Alu 1 306 -5 4354 132 26 25 chr3 24190791 24191536 -203333042 + L1 LINE L1 4058 4806 -1340 1823 153 68 60 chr3 24191536 24191883 -203332695 + Tigger2a DNA MER2_type 17 369 -2339 740 205 0 0 chr3 24191883 24192010 -203332568 + FLAM_A SINE Alu 1 127 -6 1823 153 68 60 chr3 24192010 24192075 -203332503 + Tigger2a DNA MER2_type 369 432 -2 752 189 26 6 chr3 24192081 24192262 -203332316 + L1MA9 LINE L1 5921 6117 -174 245 186 68 0 chr3 24192325 24192384 -203332194 + L1MA9 LINE L1 6228 6290 -22 1402 133 136 45 chr3 24192932 24193262 -203331316 - MER46B DNA MER2_type -1 235 1 295 327 96 0 chr3 24193649 24193753 -203330825 - L2 LINE L2 -3 3269 3156 280 255 85 0 chr3 24193855 24193961 -203330617 - HAL1b LINE L1 -17 1331 1217 217 353 118 17 chr3 24194218 24194337 -203330241 + MIR SINE MIR 17 147 -61 200 244 0 0 chr3 24194399 24194440 -203330138 - L2 LINE L2 -94 3178 3138 1412 273 26 19 chr3 24194476 24194562 -203330016 + L2 LINE L2 2641 2725 -588 2576 88 40 3 chr3 24194562 24194913 -203329665 - THE1B LTR MaLR 0 364 1 1412 273 26 19 chr3 24194913 24195488 -203329090 + L2 LINE L2 2725 3309 -4 345 191 85 11 chr3 24195535 24195629 -203328949 - MER91C DNA MER1_type -37 103 3 22 0 0 0 chr3 24195670 24195692 -203328886 + AT_rich Low_complexity Low_complexity 1 22 0 425 281 99 53 chr3 24195701 24195951 -203328627 - L1ME4a LINE L1 -56 6065 5828 899 248 14 18 chr3 24195951 24196173 -203328405 + MER58A DNA MER1_type 1 221 -3 425 281 99 53 chr3 24196173 24196395 -203328183 - L1ME4a LINE L1 -293 5828 5571 2122 127 9 3 chr3 24197033 24197356 -203327222 - L1PB3 LINE L1 -1 6153 5829 189 0 0 0 chr3 24198297 24198318 -203326260 + (TTTTTA)n Simple_repeat Simple_repeat 6 26 0 298 143 0 0 chr3 24198739 24198781 -203325797 + MER5B DNA MER1_type 1 42 -136 2536 206 67 28 chr3 24198862 24198993 -203325585 + L1ME2 LINE L1 5455 5579 -755 2401 92 0 16 chr3 24198993 24199308 -203325270 + AluSg SINE Alu 1 310 0 2536 206 67 28 chr3 24199308 24199867 -203324711 + L1ME2 LINE L1 5579 6334 0 481 244 42 34 chr3 24199873 24199992 -203324586 + MER5B DNA MER1_type 59 178 0 2135 221 46 5 chr3 24200470 24201032 -203323546 + L1ME2 LINE L1 5571 6155 -9 3136 188 79 36 chr3 24201386 24202169 -203322409 + L1MB5 LINE L1 4864 5612 -562 5028 81 0 6 chr3 24202169 24202850 -203321728 + L1PA14 LINE L1 5484 6160 -1 3136 188 79 36 chr3 24202850 24203009 -203321569 + L1MB5 LINE L1 5612 5763 -411 2195 78 63 0 chr3 24203009 24203293 -203321285 + AluY SINE Alu 1 302 -9 3136 188 79 36 chr3 24203293 24203601 -203320977 + L1MB5 LINE L1 5763 6165 -9 498 254 123 41 chr3 24203729 24203949 -203320629 + MIR SINE MIR 7 244 -18 9420 180 50 10 chr3 24204052 24205889 -203318689 + L1MA4 LINE L1 13 1921 -5247 * 10691 172 30 78 chr3 24205886 24206138 -203318440 + L1MA4 LINE L1 2749 3011 -4156 2029 123 7 20 chr3 24206138 24206440 -203318138 + AluSg1 SINE Alu 1 298 -11 10691 172 30 78 chr3 24206440 24209443 -203315135 + L1MA4 LINE L1 3011 5794 -1373 3447 133 27 21 chr3 24209443 24210068 -203314510 + L1MA4 LINE L1 6689 7318 -3 406 304 95 0 chr3 24210688 24210836 -203313742 - MIR SINE MIR -48 214 53 229 122 49 0 chr3 24210877 24210918 -203313660 + L1ME LINE L1 5681 5723 -447 24 53 0 0 chr3 24210935 24210973 -203313605 + AT_rich Low_complexity Low_complexity 1 38 0 383 256 81 56 chr3 24211946 24212106 -203312472 + MER5A DNA MER1_type 1 164 -25 181 317 0 0 chr3 24212798 24212839 -203311739 - L3b LINE CR1 -90 1493 1453 215 206 29 0 chr3 24214091 24214159 -203310419 + (CATATA)n Simple_repeat Simple_repeat 2 71 0 1619 184 10 36 chr3 24217778 24218082 -203306496 + AluJo SINE Alu 1 296 -16 2524 166 74 19 chr3 24218447 24219043 -203305535 + L1MB8 LINE L1 5545 6173 -5 203 326 122 44 chr3 24219119 24219300 -203305278 - MIR3 SINE MIR -11 197 3 2154 127 0 13 chr3 24219431 24219731 -203304847 - AluJb SINE Alu -16 296 1 2067 126 0 38 chr3 24220272 24220589 -203303989 + AluSx SINE Alu 1 305 -7 665 137 0 0 chr3 24221368 24221470 -203303108 - AluJ/FLAM SINE Alu -210 102 1 21 57 0 0 chr3 24221608 24221643 -203302935 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr3 24223410 24223448 -203301130 + AT_rich Low_complexity Low_complexity 1 38 0 587 319 114 33 chr3 24224329 24224690 -203299888 + L3 LINE CR1 1117 1506 -71 32 43 0 0 chr3 24226656 24226702 -203297876 + AT_rich Low_complexity Low_complexity 1 46 0 2353 71 10 0 chr3 24226785 24227080 -203297498 - AluSp SINE Alu -15 298 1 180 111 0 0 chr3 24228637 24228664 -203295914 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 847 213 77 19 chr3 24228858 24229065 -203295513 + MER20 DNA MER1_type 1 219 0 292 268 61 0 chr3 24229141 24229223 -203295355 + MIR3 SINE MIR 109 195 -13 336 285 124 54 chr3 24230701 24230887 -203293691 + L1ME4a LINE L1 3913 4111 -2035 360 324 96 36 chr3 24230935 24231185 -203293393 + L1ME4a LINE L1 5333 5597 -2211 266 111 0 0 chr3 24231185 24231221 -203293357 - tRNA-Asp-GAC tRNA tRNA -38 37 2 279 215 25 83 chr3 24231257 24231348 -203293230 + L1ME4a LINE L1 5616 5700 -421 2056 112 10 10 chr3 24231348 24231643 -203292935 - AluSx SINE Alu -17 295 1 279 215 25 83 chr3 24231643 24231672 -203292906 + L1ME4a LINE L1 5700 5729 -392 379 247 153 31 chr3 24231760 24231983 -203292595 + L1ME4a LINE L1 5872 6121 0 284 211 10 39 chr3 24232757 24232861 -203291717 + G-rich Low_complexity Low_complexity 1 101 0 332 274 120 17 chr3 24233954 24234071 -203290507 - L2 LINE L2 -1 3312 3184 560 274 93 102 chr3 24234312 24234521 -203290057 + L1MEd LINE L1 14 223 -5896 326 235 184 20 chr3 24234521 24234619 -203289959 - MER81 DNA DNA 0 114 1 560 274 93 102 chr3 24234619 24235116 -203289462 + L1MEd LINE L1 223 714 -5405 180 0 0 0 chr3 24235268 24235288 -203289290 + (TC)n Simple_repeat Simple_repeat 2 21 0 346 0 47 81 chr3 24235303 24235389 -203289189 + (TTATA)n Simple_repeat Simple_repeat 5 87 0 2281 70 0 14 chr3 24235394 24235679 -203288899 - AluY SINE Alu -26 285 5 332 276 165 25 chr3 24235964 24236254 -203288324 - L1M4c LINE L1 -868 1875 1514 1850 168 0 3 chr3 24237137 24237428 -203287150 + AluJb SINE Alu 7 296 -16 530 279 93 0 chr3 24237478 24237573 -203287005 + MER5B DNA MER1_type 22 107 -71 198 0 0 0 chr3 24237573 24237595 -203286983 + (TG)n Simple_repeat Simple_repeat 2 23 0 * 252 0 0 0 chr3 24237594 24237622 -203286956 + (TA)n Simple_repeat Simple_repeat 1 28 0 530 279 93 0 chr3 24237595 24237666 -203286912 + MER5B DNA MER1_type 107 174 -4 581 205 193 0 chr3 24237681 24237833 -203286745 + MER5A DNA MER1_type 4 189 0 939 287 92 27 chr3 24237907 24238311 -203286267 + LTR67 LTR ERVL 112 541 -16 948 251 62 13 chr3 24239054 24239281 -203285297 - MIR SINE MIR -22 240 3 1834 190 11 16 chr3 24239390 24239753 -203284825 + MLT1A1 LTR MaLR 3 363 -2 1988 134 51 24 chr3 24239757 24240130 -203284448 + MLT1A1-int LTR MaLR 6 388 -1347 785 178 8 0 chr3 24241032 24241161 -203283417 - FLAM_A SINE Alu -2 131 2 503 309 60 36 chr3 24241202 24241732 -203282846 - L1ME LINE L1 -342 5822 5280 2148 123 0 10 chr3 24241747 24242048 -203282530 - AluSx SINE Alu -14 298 1 1579 189 3 53 chr3 24242992 24243196 -203281382 - AluJo SINE Alu -10 302 89 2060 143 35 27 chr3 24243196 24243568 -203281010 + THE1C LTR MaLR 1 375 0 10343 108 23 33 chr3 24243568 24245164 -203279414 + THE1C-int LTR MaLR 1 1580 0 2276 111 24 35 chr3 24245164 24245541 -203279037 + THE1C LTR MaLR 1 373 -2 1579 189 3 53 chr3 24245541 24245652 -203278926 - AluJo SINE Alu -220 92 1 367 233 86 35 chr3 24246224 24246340 -203278238 + MIR SINE MIR 49 170 -92 374 247 217 72 chr3 24246771 24247006 -203277572 - MLT1L LTR MaLR -338 277 9 1909 143 0 10 chr3 24247510 24247803 -203276775 - AluJb SINE Alu -22 290 1 235 204 37 68 chr3 24247975 24248137 -203276441 + L1ME4a LINE L1 5965 6121 0 22 0 0 0 chr3 24248884 24248906 -203275672 + AT_rich Low_complexity Low_complexity 1 22 0 258 226 83 12 chr3 24249510 24249594 -203274984 - MLT1J LTR MaLR -418 93 4 323 331 62 0 chr3 24249719 24249849 -203274729 + MIR3 SINE MIR 59 196 -12 5998 145 21 29 chr3 24251408 24251949 -203272629 + L1MA3 LINE L1 3988 4532 -1773 1950 100 86 0 chr3 24251949 24252241 -203272337 + AluSp SINE Alu 1 315 0 5998 145 21 29 chr3 24252241 24253538 -203271040 + L1MA3 LINE L1 4532 5782 -523 2259 101 0 55 chr3 24253538 24253866 -203270712 + AluSg SINE Alu 1 310 0 5998 145 21 29 chr3 24253866 24254384 -203270194 + L1MA3 LINE L1 5782 6303 -2 313 268 93 111 chr3 24255137 24255417 -203269161 + MLT1L LTR MaLR 237 511 0 828 221 89 36 chr3 24256159 24256440 -203268138 + MLT1I LTR MaLR 108 403 -6 2106 157 52 41 chr3 24257480 24257965 -203266613 + L1MB7 LINE L1 5646 6135 -49 29 28 0 0 chr3 24257971 24258007 -203266571 + AT_rich Low_complexity Low_complexity 1 36 0 599 235 52 13 chr3 24258948 24259101 -203265477 - MLT1I LTR MaLR -247 162 4 1115 196 70 3 chr3 24259113 24259414 -203265164 - MER33 DNA MER1_type -3 321 1 30 45 0 0 chr3 24259483 24259527 -203265051 + AT_rich Low_complexity Low_complexity 1 44 0 399 296 0 9 chr3 24259678 24259786 -203264792 + MIR3 SINE MIR 95 201 -7 2202 123 10 0 chr3 24260857 24261159 -203263419 + AluY SINE Alu 1 305 -6 667 226 65 6 chr3 24262178 24262346 -203262232 + MIR SINE MIR 85 262 0 419 196 9 19 chr3 24262497 24262604 -203261974 - L1MC5 LINE L1 -50 7911 7806 304 293 26 9 chr3 24262642 24262758 -203261820 - L1MB7 LINE L1 -11 6173 6056 372 286 137 31 chr3 24263451 24263612 -203260966 + MIR SINE MIR 79 256 -6 402 232 0 40 chr3 24263646 24263745 -203260833 - LTR16A1 LTR ERVL 0 457 363 709 146 58 102 chr3 24263745 24263951 -203260627 - L1MB8 LINE L1 -96 6082 5886 * 1090 209 0 0 chr3 24263946 24264180 -203260398 - L1MB7 LINE L1 -257 5921 5688 955 231 93 31 chr3 24264206 24264561 -203260017 - LTR16A1 LTR ERVL -80 377 1 197 356 48 20 chr3 24264883 24265029 -203259549 - L2 LINE L2 -453 2861 2712 2412 70 3 26 chr3 24265055 24265367 -203259211 - AluY SINE Alu -6 305 1 361 263 30 10 chr3 24265505 24265604 -203258974 + MIR SINE MIR 40 140 -68 2466 206 25 9 chr3 24266180 24266742 -203257836 - L1MC4a LINE L1 0 7808 7238 495 229 122 15 chr3 24266837 24266968 -203257610 - L2 LINE L2 0 3313 3169 1631 173 74 6 chr3 24267143 24267507 -203257071 - MER114 LTR ERV -259 389 1 619 276 57 10 chr3 24268070 24268262 -203256316 - MIR SINE MIR -11 251 51 2448 69 0 13 chr3 24268595 24268898 -203255680 - AluY SINE Alu -12 299 1 445 188 71 9 chr3 24269127 24269239 -203255339 - MIR SINE MIR -40 222 104 981 223 33 83 chr3 24269247 24269680 -203254898 - MLT1B LTR MaLR 0 390 1 2150 134 47 19 chr3 24269689 24270054 -203254524 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr3 24270566 24270590 -203253988 + AT_rich Low_complexity Low_complexity 1 24 0 1748 120 11 22 chr3 24270594 24270870 -203253708 + AluSp SINE Alu 41 313 0 301 304 0 0 chr3 24271387 24271466 -203253112 - L2 LINE L2 -6 3307 3229 1874 201 39 87 chr3 24271630 24272133 -203252445 + MLT2B1 LTR ERVL 1 478 -42 501 17 0 0 chr3 24272133 24272191 -203252387 + (CA)n Simple_repeat Simple_repeat 2 59 0 1874 201 39 87 chr3 24272191 24272225 -203252353 + MLT2B1 LTR ERVL 478 512 -8 2476 239 55 44 chr3 24272249 24272717 -203251861 + MLT2F LTR ERVL 1 479 -184 1213 189 28 0 chr3 24272717 24272929 -203251649 - MER20 DNA MER1_type -1 218 1 2476 239 55 44 chr3 24272929 24273114 -203251464 + MLT2F LTR ERVL 479 661 -2 505 348 116 23 chr3 24273730 24274238 -203250340 - L2 LINE L2 -19 3294 2733 2042 255 96 7 chr3 24274357 24274954 -203249624 - L2 LINE L2 -344 2970 2321 383 286 17 8 chr3 24274979 24275098 -203249480 + MER34 LTR ERV1 7 126 -416 * 734 221 128 42 chr3 24275069 24275478 -203249100 + LTR48 LTR ERV1 140 780 -7 511 81 14 0 chr3 24275622 24275696 -203248882 - MLT2A2 LTR ERVL 0 453 379 891 234 24 13 chr3 24275783 24276100 -203248478 - MLT2B3 LTR ERVL -54 500 184 2526 131 10 22 chr3 24276101 24276514 -203248064 - L1P LINE L1 -952 5194 4787 7890 156 56 92 chr3 24276520 24278550 -203246028 + LTR48B-int LTR ERV1 4157 6111 -220 2531 47 0 35 chr3 24278550 24278868 -203245710 - AluY SINE Alu -4 307 1 7890 156 56 92 chr3 24278868 24278901 -203245677 + LTR48B-int LTR ERV1 6111 6144 -187 629 231 152 46 chr3 24279000 24279480 -203245098 + LTR48B LTR ERV1 1 633 -11 3192 247 181 16 chr3 24279487 24280678 -203243900 - L2 LINE L2 -1016 2298 912 1830 192 63 63 chr3 24280683 24281177 -203243401 + MLT1D LTR MaLR 5 498 -7 2210 110 41 9 chr3 24281181 24281526 -203243052 - MER46B DNA MER2_type 0 236 6 277 202 71 12 chr3 24281461 24281545 -203243033 + MER46A DNA MER2_type 75 163 -73 * 242 261 33 43 chr3 24281591 24281683 -203242895 - L2 LINE L2 -2477 837 747 317 264 135 20 chr3 24282558 24282706 -203241872 + MIR SINE MIR 79 243 -19 1001 192 0 0 chr3 24283027 24283199 -203241379 - MER3 DNA MER1_type -11 198 27 207 224 155 0 chr3 24283504 24283562 -203241016 - L2 LINE L2 -1 3312 3246 833 246 97 14 chr3 24283617 24284035 -203240543 - L2 LINE L2 -185 3128 2677 1223 219 34 24 chr3 24284072 24284384 -203240194 - MER39 LTR ERV1 -2 687 393 441 163 38 0 chr3 24284395 24284475 -203240103 + MLT1A1 LTR MaLR 3 85 -280 1293 179 0 18 chr3 24284477 24284695 -203239883 + AluJb SINE Alu 5 218 -94 1026 131 11 0 chr3 24284695 24284870 -203239708 - MSTA-int LTR MaLR -1474 177 1 2714 135 51 17 chr3 24284870 24285284 -203239294 - MSTA LTR MaLR 0 428 1 3507 153 39 22 chr3 24285284 24285920 -203238658 + Tigger2 DNA MER2_type 2072 2718 0 664 283 49 29 chr3 24286998 24287242 -203237336 + MIR SINE MIR 14 262 0 1536 113 4 13 chr3 24287248 24287479 -203237099 - MER39 LTR ERV1 -5 702 474 3275 118 63 44 chr3 24287479 24288048 -203236530 + MER4D LTR ERV1 1 580 -323 229 207 138 17 chr3 24288035 24288093 -203236485 - MER39 LTR ERV1 -319 388 324 * 1285 171 147 11 chr3 24288340 24288730 -203235848 + MER39 LTR ERV1 1 432 -221 2396 153 138 4 chr3 24288730 24289181 -203235397 - MER4D LTR ERV1 0 903 393 6466 100 17 10 chr3 24289185 24289977 -203234601 + L1PA16 LINE L1 5105 5906 -260 2808 110 11 3 chr3 24289977 24290349 -203234229 + THE1C LTR MaLR 1 375 0 6466 100 17 10 chr3 24290349 24290611 -203233967 + L1PA16 LINE L1 5906 6165 -1 248 212 222 0 chr3 24290769 24290868 -203233710 + MIR SINE MIR 118 238 -24 372 282 51 8 chr3 24291061 24291178 -203233400 - MIR3 SINE MIR -6 202 81 1927 130 3 7 chr3 24291310 24291641 -203232937 + AluY SINE Alu 1 330 0 1790 203 68 60 chr3 24292276 24292822 -203231756 + MER34C LTR ERV1 36 585 0 226 299 29 51 chr3 24292822 24292959 -203231619 - MIR SINE MIR -116 146 13 2455 86 0 0 chr3 24293680 24293981 -203230597 - AluSq SINE Alu -12 301 1 1813 187 50 22 chr3 24294413 24294777 -203229801 + MLT1A2 LTR MaLR 1 374 0 1028 256 47 18 chr3 24295070 24295347 -203229231 + MLT1I LTR MaLR 125 409 0 398 266 0 11 chr3 24295370 24295464 -203229114 - L2 LINE L2 -1 3271 3179 832 181 67 0 chr3 24295708 24295857 -203228721 + MER5A DNA MER1_type 1 159 -30 303 273 152 15 chr3 24295741 24295873 -203228705 - MER5A DNA MER1_type -23 166 17 * 399 295 98 36 chr3 24296693 24296917 -203227661 - MIR SINE MIR -12 250 13 1166 243 141 17 chr3 24297571 24297933 -203226645 - MLT1I LTR MaLR -1 408 2 322 293 68 8 chr3 24298119 24298252 -203226326 - MIR SINE MIR -20 242 102 382 219 41 41 chr3 24298338 24298461 -203226117 + MER77 LTR ERV1 90 212 -393 689 111 0 10 chr3 24298629 24298728 -203225850 + MER4A LTR ERV1 1 98 -566 1822 130 9 34 chr3 24298728 24299082 -203225496 + MER4A LTR ERV1 261 664 0 13432 122 133 92 chr3 24299085 24302622 -203221956 + MER4A-int LTR ERV1 1 3681 -2917 12916 98 53 11 chr3 24302621 24304610 -203219968 + MER4A-int LTR ERV1 3837 5908 -690 * 45231 36 4 1 chr3 24304610 24310751 -203213827 + L1PA4 LINE L1 1 6155 0 4354 104 51 18 chr3 24310752 24311434 -203213144 + MER4A-int LTR ERV1 5892 6596 -2 510 189 0 11 chr3 24311442 24311537 -203213041 + MER4A LTR ERV1 5 98 -566 1753 147 3 24 chr3 24311537 24311890 -203212688 + MER4A LTR ERV1 261 664 0 511 230 44 122 chr3 24311911 24312272 -203212306 + MER77 LTR ERV1 322 633 -4 300 268 14 0 chr3 24312332 24312403 -203212175 - MIR SINE MIR -150 112 41 1090 178 89 15 chr3 24312536 24312738 -203211840 + MER20 DNA MER1_type 2 218 -1 2118 112 47 78 chr3 24312790 24313175 -203211403 - THE1C LTR MaLR 0 375 3 2713 163 59 17 chr3 24313335 24313889 -203210689 + MER39 LTR ERV1 1 628 -79 3650 79 39 14 chr3 24313889 24314380 -203210198 - L1PA8 LINE L1 -19 6153 5651 2713 163 59 17 chr3 24314380 24314464 -203210114 + MER39 LTR ERV1 628 707 0 1240 255 154 17 chr3 24314504 24314912 -203209666 - LTR16B LTR ERVL 0 464 1 2100 124 79 19 chr3 24315129 24315508 -203209070 + MER34C LTR ERV1 7 408 -177 366 284 17 17 chr3 24316846 24316962 -203207616 - L2 LINE L2 -1 3312 3197 494 234 57 19 chr3 24317457 24317615 -203206963 - LTR16C LTR ERVL 0 491 328 1595 232 102 9 chr3 24318856 24319305 -203205273 + MER90 LTR ERV1 119 609 -5 919 294 88 26 chr3 24319575 24319960 -203204618 + LTR16C LTR ERVL 83 491 0 1513 171 56 0 chr3 24320000 24320172 -203204406 - AluJb SINE Alu 0 308 113 251 27 0 27 chr3 24320172 24320209 -203204369 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 1513 171 56 0 chr3 24320209 24320329 -203204249 - AluJb SINE Alu -195 113 1 251 333 90 32 chr3 24320382 24320528 -203204050 + MLT1K LTR MaLR 169 330 -258 1168 251 144 22 chr3 24320528 24320957 -203203621 + MLT1H1 LTR MaLR 3 501 -54 2164 109 3 0 chr3 24320957 24321261 -203203317 + AluSx SINE Alu 1 305 -7 1168 251 144 22 chr3 24321261 24321324 -203203254 + MLT1H1 LTR MaLR 501 555 0 251 333 90 32 chr3 24321324 24321366 -203203212 + MLT1K LTR MaLR 330 368 -220 534 309 102 62 chr3 24321529 24321949 -203202629 - L2 LINE L2 -9 3263 2827 191 341 24 24 chr3 24322076 24322158 -203202420 - L2 LINE L2 -1024 2290 2209 23 33 0 0 chr3 24322506 24322536 -203202042 + AT_rich Low_complexity Low_complexity 1 30 0 803 272 63 48 chr3 24323585 24323979 -203200599 + MLT1L LTR MaLR 216 615 0 289 289 38 113 chr3 24324094 24324360 -203200218 + MIR SINE MIR 17 262 0 22 35 0 0 chr3 24326030 24326059 -203198519 + AT_rich Low_complexity Low_complexity 1 29 0 928 193 17 84 chr3 24326291 24326529 -203198049 + MER58A DNA MER1_type 1 222 -2 2261 97 0 0 chr3 24326669 24326978 -203197600 - AluSx SINE Alu -3 309 1 2159 97 17 3 chr3 24327578 24327877 -203196701 + AluY SINE Alu 1 303 -8 1636 236 49 47 chr3 24328110 24328517 -203196061 - LTR16C LTR ERVL -10 481 74 2313 90 3 3 chr3 24329406 24329718 -203194860 + AluSx SINE Alu 1 312 0 560 219 174 7 chr3 24329888 24330043 -203194535 + MER5A DNA MER1_type 9 189 0 543 53 0 0 chr3 24330301 24330376 -203194202 + (TA)n Simple_repeat Simple_repeat 2 76 0 864 126 0 66 chr3 24330396 24330547 -203194031 - AluJo SINE Alu -171 141 1 213 121 0 0 chr3 24331039 24331072 -203193506 + (GA)n Simple_repeat Simple_repeat 1 33 0 3198 46 5 51 chr3 24331503 24331935 -203192643 - L1PA8 LINE L1 -10 6162 5751 24 0 0 0 chr3 24333100 24333124 -203191454 + AT_rich Low_complexity Low_complexity 1 24 0 975 175 45 35 chr3 24333362 24333562 -203191016 + MER3 DNA MER1_type 8 209 0 294 200 0 0 chr3 24333519 24333569 -203191009 - MER3 DNA MER1_type -119 90 41 * 2164 119 0 0 chr3 24334166 24334468 -203190110 - AluSx SINE Alu -9 303 2 2194 116 139 16 chr3 24336104 24336485 -203188093 + MSTA LTR MaLR 1 428 0 1541 152 16 107 chr3 24336488 24336762 -203187816 - L1MB7 LINE L1 -38 6146 5848 1739 121 0 43 chr3 24336762 24337043 -203187535 - AluSx SINE Alu -14 298 30 1541 152 16 107 chr3 24337043 24337104 -203187474 - L1MB7 LINE L1 -336 5848 5783 2081 123 7 0 chr3 24337104 24337412 -203187166 - AluSg SINE Alu 0 310 1 1541 152 16 107 chr3 24337412 24337425 -203187153 - L1MB7 LINE L1 -401 5783 5770 2421 147 29 44 chr3 24337425 24337493 -203187085 - L1MB2 LINE L1 -7 6164 6097 2240 147 86 15 chr3 24337493 24337889 -203186689 + MSTB LTR MaLR 1 424 -2 2202 94 3 3 chr3 24337889 24338196 -203186382 + AluSq SINE Alu 1 307 -6 2421 147 29 44 chr3 24338196 24338602 -203185976 - L1MB2 LINE L1 -72 6099 5696 1541 152 16 107 chr3 24338602 24338633 -203185945 - L1MB7 LINE L1 -413 5771 5800 1804 156 3 3 chr3 24338833 24339134 -203185444 + AluSx SINE Alu 1 301 -11 1723 255 59 60 chr3 24340602 24340816 -203183762 - L1MEd LINE L1 -5351 768 555 853 237 17 11 chr3 24340816 24340993 -203183585 + MER45A DNA AcHobo 1 178 0 1723 255 59 60 chr3 24340993 24341546 -203183032 - L1MEd LINE L1 -5564 555 2 214 191 0 0 chr3 24341615 24341657 -203182921 + T-rich Low_complexity Low_complexity 1 42 0 352 294 73 37 chr3 24341687 24341823 -203182755 - MIR SINE MIR -112 150 10 269 324 105 0 chr3 24342503 24342608 -203181970 + MIR3 SINE MIR 90 205 -3 2112 99 20 3 chr3 24343718 24344011 -203180567 + AluSx SINE Alu 1 298 -14 711 183 0 0 chr3 24394011 24394137 -203130441 + MSTD-int LTR MaLR 1610 1735 0 1298 211 121 47 chr3 24394137 24394187 -203130391 + MSTD LTR MaLR 1 46 -350 2436 80 0 10 chr3 24394187 24394501 -203130077 + AluY SINE Alu 1 311 0 1298 211 121 47 chr3 24394501 24394815 -203129763 + MSTD LTR MaLR 46 392 -4 188 386 0 0 chr3 24395283 24395353 -203129225 + L2 LINE L2 3203 3272 0 29 0 0 0 chr3 24396045 24396074 -203128504 + AT_rich Low_complexity Low_complexity 1 29 0 699 126 0 0 chr3 24397513 24397616 -203126962 - AluSp/q SINE Alu -1 312 210 1390 190 45 77 chr3 24398397 24398848 -203125730 - MER4C-int LTR ERV1 -1603 3277 2111 401 225 49 28 chr3 24398872 24399014 -203125564 - MER4C-int LTR ERV1 -1937 2943 2799 1020 210 88 16 chr3 24399016 24399261 -203125317 + LTR49-int LTR ERV1 1608 3537 -2794 3301 159 52 80 chr3 24399267 24399978 -203124600 + LTR8 LTR ERV1 1 691 0 295 254 0 14 chr3 24399979 24400050 -203124528 - MER4C-int LTR ERV1 -3930 2401 2332 388 210 0 25 chr3 24400087 24400168 -203124410 - MER4C-int LTR ERV1 -4187 2144 2066 1338 156 75 120 chr3 24400169 24400649 -203123929 - MER4C-int LTR ERV1 -4423 1908 1372 459 186 57 40 chr3 24400739 24400863 -203123715 - MER4C-int LTR ERV1 -4918 1413 1288 273 213 197 0 chr3 24400868 24400929 -203123649 - tRNA-Glu-GAG tRNA tRNA 0 75 3 643 136 136 15 chr3 24400945 24401131 -203123447 - MER4C-int LTR ERV1 -5051 1280 994 200 128 0 26 chr3 24401325 24401364 -203123214 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 998 202 120 28 chr3 24401391 24401771 -203122807 - MER4C-int LTR ERV1 -6108 490 1 1138 210 46 118 chr3 24401774 24402275 -203122303 - MER4C LTR ERV1 0 465 1 1186 214 5 0 chr3 24402275 24402485 -203122093 + LTR39 LTR ERV1 572 782 -1 463 229 31 104 chr3 24402701 24402893 -203121685 - MER5B DNA MER1_type 0 178 1 324 240 36 81 chr3 24403886 24404107 -203120471 - L1MC4 LINE L1 -1 8041 7831 2693 157 26 32 chr3 24404151 24404648 -203119930 - MLT1D LTR MaLR 0 505 12 982 234 65 87 chr3 24404740 24405189 -203119389 - L2 LINE L2 -1136 2178 1740 503 281 82 0 chr3 24406313 24406448 -203118130 + L3 LINE CR1 1061 1206 -371 318 344 89 14 chr3 24407103 24407472 -203117106 + L1MB8 LINE L1 4904 5299 -847 896 316 72 31 chr3 24407571 24407989 -203116589 + LTR16C LTR ERVL 57 491 0 340 328 81 56 chr3 24407989 24408076 -203116502 + L1MB8 LINE L1 5332 5415 -755 2453 84 0 0 chr3 24408076 24408384 -203116194 + AluY SINE Alu 1 308 -3 340 328 81 56 chr3 24408384 24408616 -203115962 + L1MB8 LINE L1 5415 5659 -511 3050 274 160 30 chr3 24408663 24410477 -203114101 + L2 LINE L2 1261 3313 0 310 261 40 62 chr3 24410487 24410705 -203113873 + L1MB8 LINE L1 5671 5885 -293 26 50 0 0 chr3 24410778 24410818 -203113760 + AT_rich Low_complexity Low_complexity 1 40 0 388 272 22 11 chr3 24411297 24411389 -203113189 - MIR SINE MIR -162 100 8 236 254 16 16 chr3 24411672 24411735 -203112843 - L2 LINE L2 -31 3241 3179 2843 10 0 0 chr3 24411985 24412292 -203112286 + AluYa5 SINE Alu 1 307 -4 3824 91 16 0 chr3 24412718 24413226 -203111352 - L1PA13 LINE L1 0 6814 6299 583 35 306 0 chr3 24413226 24413311 -203111267 - L1PA8 LINE L1 -28 6144 6034 22133 183 33 11 chr3 24413411 24419068 -203105510 - L1PA13 LINE L1 -550 6269 339 12137 144 7 20 chr3 24419066 24420944 -203103634 - L1PA12 LINE L1 -5577 2004 152 * 2018 147 3 0 chr3 24421518 24421818 -203102760 + AluJb SINE Alu 1 301 -11 291 163 20 0 chr3 24422059 24422108 -203102470 - MLT1L LTR MaLR -347 268 219 938 194 77 28 chr3 24422493 24422740 -203101838 + MIR SINE MIR 4 262 0 21 36 0 0 chr3 24422838 24422866 -203101712 + AT_rich Low_complexity Low_complexity 1 28 0 186 267 13 93 chr3 24423086 24423161 -203101417 - MIR3 SINE MIR -51 157 89 1089 171 6 6 chr3 24423536 24423712 -203100866 - MER5B DNA MER1_type -2 176 1 295 390 0 0 chr3 24424552 24424688 -203099890 - MER117 DNA MER1_type -33 164 29 230 0 33 0 chr3 24424768 24424798 -203099780 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 284 224 206 19 chr3 24424828 24424935 -203099643 - L2 LINE L2 -38 3275 3149 253 325 77 0 chr3 24425539 24425656 -203098922 - L2 LINE L2 -491 2823 2698 369 0 0 0 chr3 24425717 24425758 -203098820 + (CA)n Simple_repeat Simple_repeat 2 42 0 378 165 0 51 chr3 24425785 24425864 -203098714 + MER53 DNA DNA 115 189 0 209 291 135 14 chr3 24425903 24426051 -203098527 - L2 LINE L2 -735 2579 2414 1835 174 2 84 chr3 24426499 24426902 -203097676 + MLT1A2 LTR MaLR 1 370 -4 1294 213 10 43 chr3 24426996 24427296 -203097282 - AluJo SINE Alu -22 290 1 2203 150 6 12 chr3 24427712 24428053 -203096525 - MER44D DNA MER2_type 0 609 1 488 253 198 106 chr3 24428060 24428569 -203096009 - MLT1K LTR MaLR -31 557 2 350 286 156 5 chr3 24428631 24428855 -203095723 + L1MC4a LINE L1 5672 5929 -1879 26 88 0 0 chr3 24428972 24429040 -203095538 + AT_rich Low_complexity Low_complexity 1 68 0 1237 187 18 7 chr3 24429041 24429314 -203095264 - L1M4 LINE L1 -914 5232 4957 1213 261 90 46 chr3 24429482 24429941 -203094637 + MER77 LTR ERV1 140 596 -9 1522 275 9 40 chr3 24430002 24430456 -203094122 + MER77-int LTR ERV1 2 441 -3750 401 304 29 22 chr3 24430425 24430563 -203094015 + MER21-int LTR ERV1 298 436 -3755 * 2293 104 0 3 chr3 24431110 24431407 -203093171 - AluSg SINE Alu -14 296 1 2680 141 57 5 chr3 24432210 24432649 -203091929 - MER31A LTR ERV1 -23 462 1 324 327 9 0 chr3 24433160 24433270 -203091308 - L2 LINE L2 0 3272 3162 340 55 0 0 chr3 24433326 24433381 -203091197 - L1MB4 LINE L1 0 6180 6126 2464 57 0 7 chr3 24433381 24433674 -203090904 - L1PA7 LINE L1 0 6154 5860 229 214 0 0 chr3 24433791 24433833 -203090745 + MER58 DNA MER1_type 233 274 -2146 610 274 42 18 chr3 24434070 24434238 -203090340 + MIR SINE MIR 21 192 -70 261 61 0 0 chr3 24434323 24434356 -203090222 - MER58 DNA MER1_type -8 2412 2380 1612 173 77 14 chr3 24434454 24434980 -203089598 + MER21B LTR ERV1 1 580 -283 1117 148 44 0 chr3 24434995 24435177 -203089401 + MER21A LTR ERV1 725 914 -17 466 250 60 0 chr3 24435353 24435469 -203089109 - MER5C DNA MER1_type -200 124 2 3003 192 144 8 chr3 24435888 24436590 -203087988 - LTR1B LTR ERV1 0 826 30 24974 49 2 4 chr3 24437844 24441156 -203083422 - L1PA5 LINE L1 0 6154 2841 2393 86 3 0 chr3 24441156 24441458 -203083120 - AluY SINE Alu -8 303 1 24974 49 2 4 chr3 24441458 24441892 -203082686 - L1PA5 LINE L1 -3313 2841 2408 539 291 36 31 chr3 24442229 24442425 -203082153 - L2 LINE L2 0 3313 3117 1571 277 82 21 chr3 24442704 24443177 -203081401 + MLT1J LTR MaLR 8 509 -2 1675 61 17 26 chr3 24443394 24443624 -203080954 - L1PA10 LINE L1 -4 6164 5937 196 270 0 68 chr3 24443626 24443700 -203080878 - L2 LINE L2 -5 3308 3240 273 255 156 28 chr3 24444384 24444525 -203080053 - MIR SINE MIR -13 249 91 185 264 22 88 chr3 24444574 24444665 -203079913 + MIR3 SINE MIR 95 179 -29 6170 122 192 97 chr3 24444755 24446305 -203078273 - pTR5 LTR ERV1 0 2438 741 953 318 73 19 chr3 24446517 24446929 -203077649 - MLT1J LTR MaLR -75 436 3 1631 176 67 10 chr3 24446994 24447306 -203077272 + Tigger1 DNA MER2_type 1 330 -2088 1254 216 42 52 chr3 24447306 24447834 -203076744 - PABL_B LTR ERV1 0 667 1 37305 200 18 10 chr3 24447922 24453515 -203071063 - PABL_B-int LTR ERV1 -64 7058 1342 2382 94 3 0 chr3 24453515 24453812 -203070766 - AluSp SINE Alu -15 298 1 37305 200 18 10 chr3 24453812 24455142 -203069436 - PABL_B-int LTR ERV1 -5780 1342 23 1218 222 32 64 chr3 24455155 24455493 -203069085 - PABL_B LTR ERV1 0 667 210 2148 128 3 0 chr3 24455493 24455805 -203068773 + AluSp SINE Alu 1 313 0 1218 222 32 64 chr3 24455805 24456009 -203068569 - PABL_B LTR ERV1 -457 210 1 13345 121 25 22 chr3 24456009 24458091 -203066487 + Tigger1 DNA MER2_type 327 2416 -2 2061 116 3 28 chr3 24458285 24458604 -203065974 + AluSx SINE Alu 1 311 -1 16793 162 43 9 chr3 24458756 24461707 -203062871 + L1MC3 LINE L1 4 7355 -408 13985 166 24 12 chr3 24461705 24463094 -203061484 + L1MA2 LINE L1 3208 4578 -2987 * 2429 74 0 10 chr3 24463094 24463390 -203061188 + AluY SINE Alu 1 293 -18 13985 166 24 12 chr3 24463390 24465038 -203059540 + L1MA2 LINE L1 4578 6286 -1279 2361 153 48 15 chr3 24465042 24465442 -203059136 - MSTA LTR MaLR -14 414 2 3642 142 10 9 chr3 24465443 24465825 -203058753 + L1MA2 LINE L1 6286 6666 -1057 2476 118 131 8 chr3 24465825 24466206 -203058372 + MSTA LTR MaLR 1 428 0 3642 142 10 9 chr3 24466206 24466751 -203057827 + L1MA2 LINE L1 6666 7209 -514 1901 103 17 21 chr3 24466754 24467045 -203057533 + L1MA2 LINE L1 7434 7723 0 529 277 25 25 chr3 24467064 24467223 -203057355 + L1ME1 LINE L1 5919 6077 -89 1120 260 40 62 chr3 24467257 24467549 -203057029 + L1M4 LINE L1 3212 3509 -2637 948 233 0 0 chr3 24467549 24467712 -203056866 + FAM SINE Alu 1 163 -12 1120 260 40 62 chr3 24467712 24468085 -203056493 + L1M4 LINE L1 3509 3863 -2283 606 14 0 0 chr3 24468087 24468158 -203056420 + (TA)n Simple_repeat Simple_repeat 1 71 0 348 171 0 0 chr3 24468158 24468228 -203056350 - AluY SINE Alu -22 279 210 301 252 36 36 chr3 24468261 24468400 -203056178 + L1M4 LINE L1 3896 4034 -2112 594 0 0 0 chr3 24468514 24468580 -203055998 + (TA)n Simple_repeat Simple_repeat 2 67 0 550 107 0 0 chr3 24468580 24468655 -203055923 - AluY SINE Alu -27 284 210 966 273 83 44 chr3 24468667 24469186 -203055392 + L1ME3A LINE L1 3875 4431 -1715 811 208 0 0 chr3 24469186 24469316 -203055262 + FLAM_A SINE Alu 1 130 -3 966 273 83 44 chr3 24469316 24469517 -203055061 + L1ME3A LINE L1 4431 4623 -1523 1202 110 6 0 chr3 24469530 24469694 -203054884 - L1MA1 LINE L1 -7 6295 6131 662 264 70 15 chr3 24469696 24470195 -203054383 + L1ME3A LINE L1 4967 5462 -702 3797 47 7 2 chr3 24470201 24470647 -203053931 - LTR7 LTR ERV1 -2 448 1 2557 86 39 16 chr3 24470647 24471030 -203053548 - HERVH LTR ERV1 0 7713 7322 1435 120 18 5 chr3 24471028 24471245 -203053333 - HERVH LTR ERV1 -1894 5819 5600 * 4479 137 0 1 chr3 24471246 24471909 -203052669 - HERVH LTR ERV1 -2564 5149 4488 3349 121 4 6 chr3 24471911 24472414 -203052164 - HERVH LTR ERV1 -3720 3993 3492 907 149 20 0 chr3 24472404 24472552 -203052026 - HERVH LTR ERV1 -4423 3290 3140 * 20682 89 11 28 chr3 24472538 24475582 -203048996 - HERVH LTR ERV1 -4721 2992 1 3462 42 10 105 chr3 24475584 24476079 -203048499 - LTR7 LTR ERV1 -2 448 1 1062 282 40 49 chr3 24476085 24476532 -203048046 + L1ME3A LINE L1 5495 5937 -233 575 72 0 24 chr3 24476534 24476617 -203047961 + L1MA4 LINE L1 6214 6294 -6 4243 160 18 47 chr3 24476633 24477527 -203047051 + L1MB8 LINE L1 5299 6178 0 27 0 0 0 chr3 24477709 24477736 -203046842 + AT_rich Low_complexity Low_complexity 1 27 0 435 271 7 50 chr3 24477838 24477978 -203046600 + L1ME LINE L1 5506 5639 -482 1055 249 97 52 chr3 24477979 24478404 -203046174 + MLT1H LTR MaLR 98 541 -8 328 267 20 0 chr3 24478408 24478509 -203046069 + L1ME LINE L1 5647 5749 -372 904 272 204 28 chr3 24478511 24479011 -203045567 + MLT1K LTR MaLR 1 588 0 4779 192 15 5 chr3 24479654 24480898 -203043680 + L1MB5 LINE L1 4903 6159 -15 270 0 0 0 chr3 24480901 24480931 -203043647 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1090 168 101 10 chr3 24480943 24481151 -203043427 + AluJo SINE Alu 85 311 -1 763 184 0 0 chr3 24481160 24481269 -203043309 - FLAM_A SINE Alu -33 109 1 350 239 55 9 chr3 24481416 24481525 -203043053 + L1ME4a LINE L1 6007 6120 -1 343 259 44 37 chr3 24481571 24481706 -203042872 + MLT1J1 LTR MaLR 21 156 -290 954 241 98 8 chr3 24481710 24481955 -203042623 - MLT1G1 LTR MaLR -7 588 322 1738 166 23 13 chr3 24483096 24483404 -203041174 + L1M3 LINE L1 5329 5639 -541 * 32147 92 13 9 chr3 24483400 24486054 -203038524 - L1PA8 LINE L1 0 6487 3847 269 26 26 0 chr3 24486054 24486092 -203038486 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 32147 92 13 9 chr3 24486092 24489144 -203035434 - L1PA8 LINE L1 -2640 3847 749 772 45 0 0 chr3 24489153 24489242 -203035336 + L1P3 LINE L1 5539 5627 -545 997 223 125 60 chr3 24489355 24489672 -203034906 - MSTD LTR MaLR -4 392 46 2571 70 0 6 chr3 24489672 24489985 -203034593 - AluY SINE Alu 0 311 1 997 223 125 60 chr3 24489985 24490035 -203034543 - MSTD LTR MaLR -350 46 1 6260 227 84 43 chr3 24490035 24490186 -203034392 - MLT1B-int LTR MaLR 0 1735 1592 1800 140 87 34 chr3 24490186 24490542 -203034036 + THE1C LTR MaLR 1 375 0 6260 227 84 43 chr3 24490542 24492052 -203032526 - MLT1B-int LTR MaLR -143 1592 6 816 128 16 8 chr3 24492060 24492185 -203032393 + THE1C LTR MaLR 250 375 0 240 259 17 0 chr3 24492235 24492293 -203032285 - MER81 DNA DNA 0 114 56 1769 250 53 50 chr3 24492369 24492913 -203031665 + MLT1H1 LTR MaLR 1 546 -9 2193 149 25 63 chr3 24493552 24494134 -203030444 + MER39 LTR ERV1 1 707 0 3496 200 103 43 chr3 24495492 24496481 -203028097 + L1MC4 LINE L1 6995 8042 0 1792 257 29 60 chr3 24496491 24497069 -203027509 + L1MC4a LINE L1 5193 5230 -916 2121 151 48 13 chr3 24497069 24497446 -203027132 - MLT1B LTR MaLR 0 390 1 1792 257 29 60 chr3 24497446 24497611 -203026967 + L1MC4a LINE L1 5230 5399 -747 261 83 0 0 chr3 24497622 24497658 -203026920 + (TG)n Simple_repeat Simple_repeat 2 37 0 230 279 0 23 chr3 24497658 24497744 -203026834 + (TA)n Simple_repeat Simple_repeat 2 85 0 519 260 115 72 chr3 24498074 24498314 -203026264 - MLT1L LTR MaLR -8 503 320 369 0 0 0 chr3 24498314 24498355 -203026223 + (CA)n Simple_repeat Simple_repeat 1 41 0 519 260 115 72 chr3 24498355 24498565 -203026013 - MLT1L LTR MaLR -191 320 120 1034 253 180 13 chr3 24498975 24499359 -203025219 - LTR16C LTR ERVL 0 491 44 536 261 43 74 chr3 24499371 24499601 -203024977 - LTR16C LTR ERVL -217 274 52 439 223 33 25 chr3 24499784 24499905 -203024673 - MIR SINE MIR -44 218 97 1270 303 20 15 chr3 24500390 24500793 -203023785 - MLT1I LTR MaLR -4 405 1 337 296 96 9 chr3 24501267 24501382 -203023196 - L2 LINE L2 -9 3263 3139 1573 236 149 2 chr3 24501394 24501822 -203022756 - MLT1J LTR MaLR 0 511 21 519 311 98 50 chr3 24501865 24502405 -203022173 - L2 LINE L2 -251 3021 2458 25 0 0 0 chr3 24502632 24502657 -203021921 + AT_rich Low_complexity Low_complexity 1 25 0 182 241 139 25 chr3 24503011 24503090 -203021488 - L2 LINE L2 -2 3270 3183 678 224 76 33 chr3 24504392 24504699 -203019879 - LTR16C LTR ERVL 0 491 81 536 286 60 16 chr3 24504781 24504966 -203019612 + MIR SINE MIR 70 262 0 192 284 121 79 chr3 24505018 24505208 -203019370 - MIR3 SINE MIR -6 202 5 298 215 182 8 chr3 24505276 24505397 -203019181 + MER117 DNA MER1_type 4 145 -52 3351 73 49 9 chr3 24505575 24506002 -203018576 + MLT2A1 LTR ERVL 1 444 0 798 328 48 7 chr3 24506211 24506750 -203017828 + L1M4 LINE L1 4547 5107 -1039 270 291 153 66 chr3 24506751 24506992 -203017586 - LTR16B LTR ERVL -202 262 1 1011 177 117 53 chr3 24507385 24507684 -203016894 + MLT1H LTR MaLR 48 365 -184 355 221 19 48 chr3 24507687 24507791 -203016787 + MLT1H LTR MaLR 495 595 0 183 340 0 0 chr3 24507860 24507910 -203016668 - L2 LINE L2 0 3272 3223 * 803 270 115 4 chr3 24507876 24508102 -203016476 - MIR SINE MIR -10 252 2 353 255 45 51 chr3 24508464 24508621 -203015957 - L2 LINE L2 0 3313 3158 419 0 20 0 chr3 24509399 24509450 -203015128 + (TG)n Simple_repeat Simple_repeat 2 53 0 421 273 62 0 chr3 24509631 24509759 -203014819 + MIR3 SINE MIR 10 145 -63 1147 227 9 0 chr3 24510242 24510458 -203014120 - MER20 DNA MER1_type 0 219 2 818 252 40 24 chr3 24510491 24510741 -203013837 - LTR16C LTR ERVL -14 477 224 231 209 60 30 chr3 24513402 24513469 -203011109 - L2 LINE L2 -18 3295 3227 598 244 40 23 chr3 24514228 24514404 -203010174 + MIR SINE MIR 84 262 0 21 0 0 0 chr3 24514514 24514535 -203010043 + AT_rich Low_complexity Low_complexity 1 21 0 478 262 161 33 chr3 24514586 24515007 -203009571 - MLT1H1 LTR MaLR -4 545 20 289 266 101 0 chr3 24515030 24515109 -203009469 - MIR SINE MIR -160 102 16 942 255 174 27 chr3 24515161 24515665 -203008913 - MLT1G LTR MaLR -38 552 1 4508 120 38 10 chr3 24515708 24516399 -203008179 - L1MC1 LINE L1 0 6333 5624 248 250 59 0 chr3 24516486 24516554 -203008024 - MER116 DNA Mariner -8 72 1 305 232 14 0 chr3 24516555 24516624 -203007954 - MER113 DNA MER1_type? -448 73 4 225 65 0 0 chr3 24516721 24516752 -203007826 + (TGG)n Simple_repeat Simple_repeat 1 31 0 2232 125 0 3 chr3 24518114 24518427 -203006151 - AluSx SINE Alu 0 312 1 25 0 0 0 chr3 24518673 24518698 -203005880 + AT_rich Low_complexity Low_complexity 1 25 0 25 65 0 0 chr3 24519079 24519125 -203005453 + AT_rich Low_complexity Low_complexity 1 46 0 3154 198 29 17 chr3 24519648 24520309 -203004269 + L1MC3 LINE L1 7099 7767 -18 363 301 122 8 chr3 24520566 24520689 -203003889 - MIR3 SINE MIR -57 151 15 23 0 0 0 chr3 24521610 24521633 -203002945 + AT_rich Low_complexity Low_complexity 1 23 0 571 264 59 27 chr3 24521779 24522071 -203002507 - MLT1I LTR MaLR -2 407 73 236 317 17 0 chr3 24522184 24522244 -203002334 - L2 LINE L2 -55 3217 3157 204 40 0 0 chr3 24522992 24523017 -203001561 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 1190 199 49 8 chr3 24523035 24523281 -203001297 + MIR SINE MIR 6 261 -1 622 260 173 5 chr3 24523385 24523593 -203000985 + MIR SINE MIR 4 246 -16 183 229 38 127 chr3 24523812 24523969 -203000609 - L2 LINE L2 -457 2857 2715 860 254 75 13 chr3 24524051 24524279 -203000299 - MIR SINE MIR 0 262 21 707 227 51 23 chr3 24524668 24524844 -202999734 + MIR SINE MIR 34 214 -48 2087 174 21 9 chr3 24524922 24525094 -202999484 - L1MA10 LINE L1 -3 6331 6163 198 0 0 0 chr3 24525094 24525116 -202999462 + (TG)n Simple_repeat Simple_repeat 2 23 0 2087 174 21 9 chr3 24525116 24525363 -202999215 - L1MA10 LINE L1 -171 6163 5907 858 184 0 19 chr3 24526588 24526746 -202997832 + MER5B DNA MER1_type 6 160 -18 826 258 43 19 chr3 24526746 24526955 -202997623 - MIR SINE MIR -34 228 15 302 291 57 28 chr3 24527396 24527537 -202997041 + MIR3 SINE MIR 12 156 -52 998 239 46 18 chr3 24527558 24527838 -202996740 + MER102b DNA MER1_type 34 321 -20 520 115 58 0 chr3 24528648 24528735 -202995843 - L1MB2 LINE L1 -8 6163 6072 299 299 18 69 chr3 24528860 24529077 -202995501 - L1MB2 LINE L1 -1971 5837 5632 749 248 135 9 chr3 24529204 24529426 -202995152 + MIR SINE MIR 13 262 0 812 188 0 0 chr3 24530248 24530381 -202994197 + FLAM_A SINE Alu 1 133 0 488 311 71 14 chr3 24530740 24530952 -202993626 - L2 LINE L2 -15 3298 3075 4083 208 85 31 chr3 24530981 24531505 -202993073 + L1MB7 LINE L1 4206 4700 -1519 2044 118 25 0 chr3 24531505 24531784 -202992794 - AluSx SINE Alu -26 286 1 4083 208 85 31 chr3 24531784 24533162 -202991416 + L1MB7 LINE L1 4700 6219 0 246 62 0 0 chr3 24533162 24533194 -202991384 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 697 301 94 37 chr3 24533238 24533744 -202990834 - L2 LINE L2 -189 3124 2601 350 338 8 60 chr3 24533969 24534102 -202990476 + L2 LINE L2 3127 3252 -20 402 151 27 14 chr3 24534220 24534293 -202990285 + MLT1J2 LTR MaLR 67 140 -310 349 179 0 83 chr3 24535506 24535590 -202988988 - MER69 DNA AcHobo -100 77 1 306 254 67 52 chr3 24535683 24535817 -202988761 - MIR SINE MIR -76 186 51 183 80 0 0 chr3 24536251 24536276 -202988302 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 212 286 0 48 chr3 24536277 24536340 -202988238 - L2 LINE L2 -15 3257 3198 1030 155 7 0 chr3 24536410 24536565 -202988013 - FAM SINE Alu -19 166 11 1559 209 22 32 chr3 24536576 24536977 -202987601 + MLT2C1 LTR ERVL 1 397 0 21 0 0 0 chr3 24538305 24538326 -202986252 + AT_rich Low_complexity Low_complexity 1 21 0 2720 169 58 80 chr3 24538442 24539146 -202985432 + LTR8 LTR ERV1 1 689 -2 207 278 56 14 chr3 24541366 24541438 -202983140 + MIR SINE MIR 16 90 -172 233 352 75 6 chr3 24541903 24542062 -202982516 + L1ME4a LINE L1 5395 5564 -557 390 228 134 39 chr3 24542132 24542364 -202982214 + L1ME4a LINE L1 5565 5818 -303 320 267 0 22 chr3 24542390 24542480 -202982098 - MIR SINE MIR -4 258 171 180 0 0 0 chr3 24542599 24542619 -202981959 + (A)n Simple_repeat Simple_repeat 1 20 0 474 148 0 83 chr3 24542642 24542750 -202981828 - Tigger7 DNA MER2_type 0 2487 2389 * 1070 241 72 0 chr3 24542748 24542997 -202981581 - Tigger7 DNA MER2_type -2220 267 1 234 212 192 10 chr3 24543191 24543290 -202981288 + L1ME4a LINE L1 5981 6097 -24 236 271 143 76 chr3 24544315 24544525 -202980053 - L2 LINE L2 -32 3240 3017 554 245 168 13 chr3 24544538 24544693 -202979885 - MER5A DNA MER1_type -2 187 9 201 282 13 51 chr3 24544694 24544772 -202979806 - L2 LINE L2 -252 3020 2946 208 219 158 79 chr3 24545103 24545217 -202979361 + L2 LINE L2 3150 3272 0 841 283 53 0 chr3 24545256 24545500 -202979078 + MIR SINE MIR 6 262 0 798 141 88 35 chr3 24546086 24546256 -202978322 - MER3 DNA MER1_type 0 209 31 192 321 99 29 chr3 24546813 24547056 -202977522 - L2 LINE L2 -555 2759 2500 361 167 269 0 chr3 24547497 24547605 -202976973 + MIR SINE MIR 120 256 -6 379 258 127 9 chr3 24549037 24549250 -202975328 - L1ME4a LINE L1 -28 6093 5856 1239 259 88 5 chr3 24549286 24549683 -202974895 - LTR16A LTR ERVL 0 450 21 390 290 169 11 chr3 24549811 24549994 -202974584 - MIR SINE MIR -17 245 34 22 0 0 0 chr3 24550606 24550628 -202973950 + AT_rich Low_complexity Low_complexity 1 22 0 230 257 14 14 chr3 24551098 24551168 -202973410 + CT-rich Low_complexity Low_complexity 1 70 0 188 311 0 0 chr3 24551442 24551487 -202973091 + L2 LINE L2 3258 3302 -11 276 198 154 11 chr3 24552827 24552918 -202971660 - MER112 DNA MER1_type -7 253 150 2376 104 3 0 chr3 24552920 24553227 -202971351 + AluSx SINE Alu 1 308 -4 258 214 265 10 chr3 24554186 24554284 -202970294 + MER5A DNA MER1_type 44 166 -23 * 573 208 0 0 chr3 24554209 24554310 -202970268 - MER5A DNA MER1_type -80 109 9 26 0 0 0 chr3 24554481 24554507 -202970071 + AT_rich Low_complexity Low_complexity 1 26 0 189 205 26 0 chr3 24554621 24554660 -202969918 - L2 LINE L2 0 3313 3274 270 266 11 0 chr3 24555034 24555045 -202969533 - L1MA10 LINE L1 -5 6329 6319 2701 210 64 29 chr3 24555045 24556329 -202968249 - L1ME2 LINE L1 -9 6155 4834 336 291 47 17 chr3 24557548 24557720 -202966858 - L1ME4a LINE L1 -1 6120 5944 33 25 0 0 chr3 24557886 24557926 -202966652 + AT_rich Low_complexity Low_complexity 1 40 0 646 185 64 36 chr3 24558034 24558268 -202966310 + MER106B DNA MER1_type 1 1059 0 4561 169 41 5 chr3 24558736 24559964 -202964614 - L1MB7 LINE L1 -7 6177 4903 234 250 50 0 chr3 24560472 24560532 -202964046 - L2 LINE L2 -1391 1923 1861 800 158 148 10 chr3 24560536 24560732 -202963846 + MLT2C1 LTR ERVL 5 227 -170 398 228 22 0 chr3 24560730 24560822 -202963756 + MLT2C1 LTR ERVL 331 424 -40 * 211 259 23 38 chr3 24560822 24560953 -202963625 + (CATATA)n Simple_repeat Simple_repeat 2 130 0 * 327 201 57 13 chr3 24560859 24561018 -202963560 + (TA)n Simple_repeat Simple_repeat 1 166 0 519 17 0 0 chr3 24561018 24561078 -202963500 + (TCTA)n Simple_repeat Simple_repeat 3 62 0 23 33 0 0 chr3 24561242 24561272 -202963306 + AT_rich Low_complexity Low_complexity 1 30 0 332 267 163 75 chr3 24562423 24562730 -202961848 - L1MC4a LINE L1 -1754 6054 5721 2149 105 10 0 chr3 24562741 24563035 -202961543 + AluSx SINE Alu 6 302 -10 245 263 77 86 chr3 24563201 24563410 -202961168 - L2 LINE L2 -166 3106 2900 568 321 101 17 chr3 24563437 24563783 -202960795 - L2 LINE L2 -468 2846 2472 519 286 106 19 chr3 24563870 24564231 -202960347 - L1MC4a LINE L1 -455 5666 5274 910 186 25 101 chr3 24565862 24566099 -202958479 - MER20 DNA MER1_type 0 219 1 847 173 98 0 chr3 24569423 24569623 -202954955 + L1PA16 LINE L1 5968 6184 0 381 284 86 41 chr3 24569646 24569843 -202954735 + MIR SINE MIR 51 256 -6 207 292 139 23 chr3 24569945 24570161 -202954417 + L2 LINE L2 2013 2253 -1061 344 348 65 16 chr3 24570183 24570367 -202954211 + L2 LINE L2 2555 2747 -567 190 259 86 17 chr3 24570521 24570579 -202953999 + L2 LINE L2 2916 2977 -337 190 250 16 47 chr3 24571786 24571850 -202952728 + L2 LINE L2 3200 3261 -11 215 268 89 27 chr3 24572693 24572805 -202951773 + MIR3 SINE MIR 54 172 -36 886 245 29 29 chr3 24572885 24573130 -202951448 + MIR SINE MIR 13 257 -5 292 151 0 19 chr3 24573205 24573258 -202951320 + L2 LINE L2 2420 2471 -843 1782 140 59 9 chr3 24573258 24573579 -202950999 + MLT1B LTR MaLR 1 337 -53 2359 87 0 0 chr3 24573623 24573923 -202950655 - AluSx SINE Alu -12 300 1 897 268 96 25 chr3 24573952 24574086 -202950492 + L2 LINE L2 2935 3058 -255 390 100 0 0 chr3 24574086 24574146 -202950432 + (CA)n Simple_repeat Simple_repeat 1 60 0 897 268 96 25 chr3 24574146 24574365 -202950213 + L2 LINE L2 3058 3313 0 24 32 0 0 chr3 24575261 24575292 -202949286 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr3 24575688 24575713 -202948865 + AT_rich Low_complexity Low_complexity 1 25 0 1952 137 27 7 chr3 24575813 24576112 -202948466 - AluJo SINE Alu -7 305 1 2662 148 8 20 chr3 24576918 24577412 -202947166 + L1MB8 LINE L1 5685 6172 -6 586 279 100 16 chr3 24577906 24578508 -202946070 - L1MC/D LINE L1 -447 5795 5124 338 204 258 0 chr3 24578531 24578624 -202945954 + MER45A DNA AcHobo 62 178 0 1020 284 147 29 chr3 24578635 24579858 -202944720 - L1MC/D LINE L1 -1127 5019 3653 344 175 25 50 chr3 24579872 24579952 -202944626 + MER20 DNA MER1_type 142 219 0 226 308 64 29 chr3 24580312 24580656 -202943922 - L1MC/D LINE L1 -2932 3214 2859 2089 41 0 65 chr3 24580951 24581241 -202943337 + L1PA8 LINE L1 5902 6172 0 285 187 224 50 chr3 24581316 24581557 -202943021 + L1ME4a LINE L1 5690 5972 -149 364 308 118 34 chr3 24581712 24582069 -202942509 + L1MC4a LINE L1 5543 5929 -1879 21 0 0 0 chr3 24582233 24582254 -202942324 + AT_rich Low_complexity Low_complexity 1 21 0 27678 35 1 0 chr3 24582891 24587044 -202937534 - L1PA4 LINE L1 -3 6152 1997 460 303 115 49 chr3 24588093 24588545 -202936033 + L2 LINE L2 1754 2235 -1079 2379 73 0 0 chr3 24588687 24588976 -202935602 + AluY SINE Alu 3 291 -20 332 225 42 0 chr3 24590163 24590234 -202934344 - L2 LINE L2 0 3313 3240 215 81 54 0 chr3 24591722 24591759 -202932819 + (CATA)n Simple_repeat Simple_repeat 2 40 0 21 82 0 0 chr3 24591991 24592040 -202932538 + AT_rich Low_complexity Low_complexity 1 49 0 183 129 0 0 chr3 24592135 24592166 -202932412 + (CATATA)n Simple_repeat Simple_repeat 6 36 0 443 250 40 80 chr3 24592568 24592744 -202931834 - MIR SINE MIR -81 181 13 201 257 168 44 chr3 24592726 24592839 -202931739 + L2 LINE L2 3146 3272 0 * 185 0 40 0 chr3 24592878 24592903 -202931675 + (TTA)n Simple_repeat Simple_repeat 3 28 0 16418 38 4 1 chr3 24592903 24595659 -202928919 - L1PA5 LINE L1 -18 6136 3373 13543 166 37 96 chr3 24595696 24598902 -202925676 - L1PA15 LINE L1 -71 6745 3352 189 0 0 0 chr3 24598902 24598923 -202925655 + (TA)n Simple_repeat Simple_repeat 1 21 0 8820 33 13 0 chr3 24598927 24600761 -202923817 - L1PA3 LINE L1 -3 6152 4305 13543 166 37 96 chr3 24600761 24602342 -202922236 - L1PA15 LINE L1 -3467 3349 2238 439 298 161 59 chr3 24602587 24603496 -202921082 - L2 LINE L2 0 3272 2250 192 250 167 0 chr3 24604654 24604714 -202919864 + L2 LINE L2 3244 3313 0 25 31 0 0 chr3 24605805 24605837 -202918741 + AT_rich Low_complexity Low_complexity 1 32 0 2452 71 0 0 chr3 24606031 24606327 -202918251 - AluY SINE Alu -15 296 1 2364 81 0 7 chr3 24606442 24606738 -202917840 - AluY SINE Alu -17 294 1 428 243 28 93 chr3 24607015 24607229 -202917349 - L1MC4 LINE L1 -4 8038 7839 339 343 22 0 chr3 24607264 24607398 -202917180 - MIR SINE MIR 0 262 126 1417 224 119 17 chr3 24609252 24609613 -202914965 + LTR16A LTR ERVL 41 438 -12 957 262 56 4 chr3 24610475 24610708 -202913870 + MIR SINE MIR 1 245 -17 324 0 0 0 chr3 24612037 24612073 -202912505 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 886 196 44 20 chr3 24612463 24612667 -202911911 - MER3 DNA MER1_type 0 209 1 272 235 59 0 chr3 24612735 24612820 -202911758 - L1MB7 LINE L1 0 6184 6095 705 181 9 109 chr3 24612821 24613031 -202911547 - MER105 DNA DNA -13 191 3 1741 162 7 36 chr3 24613639 24613948 -202910630 + AluJo SINE Alu 1 300 -12 23 0 0 0 chr3 24614066 24614089 -202910489 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 24614231 24614253 -202910325 + AT_rich Low_complexity Low_complexity 1 22 0 426 284 113 24 chr3 24614732 24615024 -202909554 - L1M4 LINE L1 -2876 3270 2953 813 181 88 6 chr3 24615441 24615601 -202908977 + MER45A DNA AcHobo 2 174 -4 1564 177 0 15 chr3 24615831 24616102 -202908476 + Tigger7 DNA MER2_type 1 267 -466 511 175 19 19 chr3 24616097 24616200 -202908378 + Tigger7 DNA MER2_type 2485 2587 0 * 617 253 5 75 chr3 24616421 24616611 -202907967 + MIR SINE MIR 66 243 -19 293 222 9 13 chr3 24616915 24617023 -202907555 + MIR SINE MIR 2 149 -113 292 333 93 43 chr3 24619309 24619567 -202905011 - L3b LINE CR1 -16 1567 1297 269 339 133 48 chr3 24620795 24621344 -202903234 - L2 LINE L2 -98 3174 2591 278 333 70 74 chr3 24621597 24622014 -202902564 - L2 LINE L2 -1298 2016 1602 292 222 0 14 chr3 24623623 24623695 -202900883 + Charlie8 DNA MER1_type 132 202 -2215 232 260 39 0 chr3 24623799 24623876 -202900702 + Charlie8 DNA MER1_type 330 409 -2008 263 172 16 47 chr3 24623951 24624015 -202900563 + Charlie8 DNA MER1_type 1356 1417 -1000 25 0 0 0 chr3 24627754 24627779 -202896799 + GC_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr3 24627991 24628021 -202896557 + GC_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 24628211 24628232 -202896346 + AT_rich Low_complexity Low_complexity 1 21 0 207 242 20 46 chr3 24628243 24628396 -202896182 + (CGGGG)n Simple_repeat Simple_repeat 5 153 0 328 210 49 12 chr3 24630593 24630674 -202893904 + L2 LINE L2 3188 3271 -1 614 238 44 11 chr3 24632183 24632364 -202892214 - L1ME1 LINE L1 -10 6156 5970 556 297 63 9 chr3 24634460 24634682 -202889896 + MIR SINE MIR 8 241 -21 603 238 0 0 chr3 24634947 24635073 -202889505 - MER94 DNA DNA -8 126 1 28 0 0 0 chr3 24635892 24635920 -202888658 + AT_rich Low_complexity Low_complexity 1 28 0 393 272 111 22 chr3 24636056 24636236 -202888342 - MIR SINE MIR -54 208 13 989 222 25 66 chr3 24637833 24638255 -202886323 - L1ME1 LINE L1 -530 5640 5237 296 287 0 0 chr3 24638421 24638529 -202886049 + (TA)n Simple_repeat Simple_repeat 2 109 0 861 279 75 7 chr3 24638529 24638981 -202885597 - L1ME1 LINE L1 -902 5244 4762 1238 246 77 35 chr3 24638986 24639493 -202885085 + L1ME3A LINE L1 5638 6165 -5 419 246 187 22 chr3 24640225 24640359 -202884219 + MER5B DNA MER1_type 23 178 0 268 287 116 31 chr3 24644081 24644221 -202880357 - MIR SINE MIR -61 147 35 302 274 65 70 chr3 24645034 24645264 -202879314 + L2 LINE L2 1612 1840 -1474 185 338 83 22 chr3 24645315 24645543 -202879035 + L2 LINE L2 2150 2391 -923 2241 126 0 0 chr3 24645927 24646228 -202878350 + AluSx SINE Alu 1 301 -11 267 103 0 0 chr3 24646232 24646271 -202878307 + (TG)n Simple_repeat Simple_repeat 1 39 0 2849 85 3 5 chr3 24648036 24648412 -202876166 + THE1C LTR MaLR 1 375 0 1242 140 93 23 chr3 24649401 24649658 -202874920 + ORSL DNA AcHobo 1 275 0 351 246 15 0 chr3 24651015 24651119 -202873459 + MIR SINE MIR 106 210 -52 686 225 30 6 chr3 24651511 24651680 -202872898 - L1MC5 LINE L1 -58 7903 7731 355 224 59 24 chr3 24651698 24651868 -202872710 - L1MC5 LINE L1 -285 7676 7501 581 253 104 11 chr3 24652676 24652858 -202871720 + MIR SINE MIR 47 245 -17 2956 270 84 5 chr3 24653333 24654317 -202870261 + L2 LINE L2 1481 2542 -772 2311 96 3 0 chr3 24654363 24654665 -202869913 + AluSx SINE Alu 1 303 -9 22 80 0 0 chr3 24654731 24654781 -202869797 + AT_rich Low_complexity Low_complexity 1 50 0 1802 146 65 3 chr3 24655165 24655501 -202869077 + MER46B DNA MER2_type 1 232 -4 21 36 0 0 chr3 24655562 24655590 -202868988 + AT_rich Low_complexity Low_complexity 1 28 0 202 345 92 25 chr3 24655967 24656086 -202868492 - MIR3 SINE MIR -78 130 4 25 75 0 0 chr3 24656943 24656996 -202867582 + AT_rich Low_complexity Low_complexity 1 53 0 214 195 0 0 chr3 24657066 24657107 -202867471 + (TA)n Simple_repeat Simple_repeat 1 41 0 21 71 0 0 chr3 24658085 24658127 -202866451 + AT_rich Low_complexity Low_complexity 1 42 0 1602 188 24 7 chr3 24658130 24658423 -202866155 - AluJo SINE Alu -14 298 1 21 0 0 0 chr3 24658979 24659000 -202865578 + AT_rich Low_complexity Low_complexity 1 21 0 1429 258 113 26 chr3 24660740 24661288 -202863290 - MLT1G LTR MaLR -18 572 17 26 0 0 0 chr3 24662326 24662352 -202862226 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr3 24662472 24662503 -202862075 + AT_rich Low_complexity Low_complexity 1 31 0 415 237 62 62 chr3 24662623 24662995 -202861583 - L1M4 LINE L1 -2739 3905 3534 22 88 0 0 chr3 24663647 24663704 -202860874 + AT_rich Low_complexity Low_complexity 1 57 0 25 51 0 0 chr3 24663756 24663795 -202860783 + AT_rich Low_complexity Low_complexity 1 39 0 200 185 0 37 chr3 24666051 24666105 -202858473 + A-rich Low_complexity Low_complexity 6 57 0 3992 202 35 18 chr3 24666997 24667959 -202856619 - L1M4 LINE L1 -4927 1615 637 2455 70 0 0 chr3 24668266 24668565 -202856013 - AluY SINE Alu -12 299 1 2836 168 62 9 chr3 24668735 24669311 -202855267 - L1MB7 LINE L1 -16 6168 5562 555 226 120 51 chr3 24669609 24669826 -202854752 + MIR SINE MIR 31 262 0 2258 96 7 0 chr3 24669980 24670271 -202854307 - AluY SINE Alu -18 293 1 555 127 136 0 chr3 24670929 24671039 -202853539 - MER20 DNA MER1_type 0 219 95 228 244 228 8 chr3 24671175 24671302 -202853276 + MER103 DNA DNA 3 157 -9 314 206 32 0 chr3 24671358 24671421 -202853157 - MIR3 SINE MIR -54 154 90 247 290 0 43 chr3 24671452 24671521 -202853057 - L2 LINE L2 -25 3247 3182 438 344 78 22 chr3 24671933 24672163 -202852415 + MIR SINE MIR 16 258 -4 366 278 126 40 chr3 24672179 24672543 -202852035 - L2 LINE L2 -1360 1954 1566 271 361 113 4 chr3 24674008 24674238 -202850340 + L2 LINE L2 2226 2480 -834 210 287 69 139 chr3 24674379 24674595 -202849983 + L2 LINE L2 2979 3179 -93 197 235 39 20 chr3 24674602 24674653 -202849925 + MIR SINE MIR 207 258 -4 377 357 70 11 chr3 24674954 24675139 -202849439 + MIR SINE MIR 24 219 -43 1374 184 83 12 chr3 24675171 24675498 -202849080 + MLT1A1 LTR MaLR 4 353 -12 201 207 0 35 chr3 24676228 24676286 -202848292 + T-rich Low_complexity Low_complexity 5 60 0 7831 188 41 2 chr3 24676653 24678371 -202846207 - L1P LINE L1 -1534 4612 2827 189 0 0 0 chr3 24678381 24678402 -202846176 + (TA)n Simple_repeat Simple_repeat 2 22 0 14995 35 4 1 chr3 24678406 24680992 -202843586 - L1PA3 LINE L1 -3 6152 3560 31 0 0 0 chr3 24781916 24781947 -202742631 + AT_rich Low_complexity Low_complexity 1 31 0 245 243 10 107 chr3 24782097 24782200 -202742378 + MIR3 SINE MIR 112 204 -4 779 211 40 60 chr3 24782237 24782436 -202742142 + MER58C DNA MER1_type 2 196 -19 308 311 44 7 chr3 24782668 24782803 -202741775 - MER91C DNA MER1_type 0 140 1 713 270 132 48 chr3 24785113 24785468 -202739110 + L2 LINE L2 2929 3313 0 2268 146 9 6 chr3 24785942 24786278 -202738300 - MER1B DNA MER1_type 0 337 1 1953 205 54 14 chr3 24787508 24787952 -202736626 - MLT1C LTR MaLR 0 467 6 255 319 177 0 chr3 24789016 24789129 -202735449 + MIR SINE MIR 92 224 -38 284 364 20 10 chr3 24789195 24789346 -202735232 - MIR SINE MIR -65 143 25 296 263 131 0 chr3 24789579 24789678 -202734900 + MIR SINE MIR 86 197 -65 2265 100 0 0 chr3 24790671 24790974 -202733604 - AluSg SINE Alu 0 303 1 342 308 29 52 chr3 24792138 24792373 -202732205 + MIR SINE MIR 3 236 -26 2455 72 0 10 chr3 24792595 24792902 -202731676 + L1PA7 LINE L1 5851 6154 0 21 0 0 0 chr3 24793188 24793209 -202731369 + AT_rich Low_complexity Low_complexity 1 21 0 273 298 21 21 chr3 24793719 24793813 -202730765 + MER5A DNA MER1_type 26 119 -70 2899 89 38 23 chr3 24793835 24794153 -202730425 - L1MA3 LINE L1 0 6305 5993 2655 43 0 0 chr3 24794153 24794453 -202730125 - AluY SINE Alu -11 300 1 2899 89 38 23 chr3 24794453 24794732 -202729846 - L1MA3 LINE L1 -312 5993 5525 1379 188 56 24 chr3 24794732 24795020 -202729558 - AluJo SINE Alu -3 309 13 876 175 0 0 chr3 24795037 24795191 -202729387 - FAM SINE Alu -22 163 10 196 179 0 26 chr3 24795198 24795237 -202729341 - MER5A DNA MER1_type -108 81 44 393 310 91 21 chr3 24795617 24795804 -202728774 + MIR3 SINE MIR 6 205 -3 2980 104 30 14 chr3 24796585 24797017 -202727561 + L1PB4 LINE L1 5718 6156 0 246 289 36 24 chr3 24797337 24797420 -202727158 + MIR SINE MIR 34 117 -91 186 43 0 0 chr3 24797996 24798019 -202726559 + (TTATA)n Simple_repeat Simple_repeat 4 26 0 26 0 0 0 chr3 24798769 24798795 -202725783 + AT_rich Low_complexity Low_complexity 1 26 0 2950 166 43 61 chr3 24798911 24799533 -202725045 + LTR36 LTR ERV1 1 611 0 1585 183 9 56 chr3 24800609 24800931 -202723647 - AluJo SINE Alu -5 307 1 694 277 15 30 chr3 24800934 24801136 -202723442 + MIR SINE MIR 37 235 -27 186 71 0 0 chr3 24801784 24801812 -202722766 + (TAAAAA)n Simple_repeat Simple_repeat 1 28 0 183 80 0 0 chr3 24802042 24802067 -202722511 + (T)n Simple_repeat Simple_repeat 1 25 0 2394 103 0 3 chr3 24802517 24802829 -202721749 + AluSx SINE Alu 2 312 0 750 242 167 43 chr3 24803225 24803709 -202720869 + MLT1H1 LTR MaLR 17 555 0 227 203 51 17 chr3 24804194 24804253 -202720325 - MER91B DNA MER1_type -42 148 88 403 287 230 14 chr3 24805062 24805271 -202719307 + MIR SINE MIR 9 262 0 22 0 0 0 chr3 24805276 24805298 -202719280 + AT_rich Low_complexity Low_complexity 1 22 0 266 239 141 0 chr3 24805614 24805706 -202718872 - MIR SINE MIR -16 246 142 600 238 24 53 chr3 24807288 24807494 -202717084 + MIR SINE MIR 63 262 0 505 254 129 49 chr3 24807628 24807700 -202716878 + L1ME4a LINE L1 5740 5805 -316 2121 118 0 23 chr3 24807700 24808004 -202716574 - AluSx SINE Alu -11 301 5 505 254 129 49 chr3 24808004 24808281 -202716297 + L1ME4a LINE L1 5805 6117 -4 313 244 0 13 chr3 24808766 24808844 -202715734 - MIR3 SINE MIR -9 199 123 520 231 27 34 chr3 24809812 24809959 -202714619 + MIR SINE MIR 109 254 -8 671 165 132 6 chr3 24810077 24810233 -202714345 - MER5A DNA MER1_type -6 183 4 232 221 235 0 chr3 24812138 24812206 -202712372 - L2 LINE L2 0 3272 3189 208 222 44 89 chr3 24812270 24812360 -202712218 - MER5A DNA MER1_type -56 133 48 1719 197 23 0 chr3 24813450 24813750 -202710828 - AluJo SINE Alu 0 312 6 1928 151 0 0 chr3 24813842 24814133 -202710445 + AluJb SINE Alu 5 295 -17 335 255 135 73 chr3 24814417 24814481 -202710097 + MLT1L LTR MaLR 215 274 -341 936 156 27 11 chr3 24814481 24814667 -202709911 + MER53 DNA DNA 1 189 0 335 255 135 73 chr3 24814667 24814861 -202709717 + MLT1L LTR MaLR 274 489 -126 423 313 81 19 chr3 24814861 24815021 -202709557 - MER5B DNA MER1_type -2 176 7 341 183 76 20 chr3 24816275 24816364 -202708214 + L1MC4a LINE L1 6285 6371 -1437 2286 147 3 29 chr3 24816364 24816710 -202707868 + MER1B DNA MER1_type 1 337 0 311 330 0 22 chr3 24817333 24817424 -202707154 - MER91A DNA MER1_type -40 156 68 279 108 0 0 chr3 24817589 24817626 -202706952 + MSTA LTR MaLR 1 37 -391 1687 176 141 3 chr3 24817626 24817995 -202706583 + MSTA LTR MaLR 9 428 0 9875 169 29 3 chr3 24817995 24819603 -202704975 + MSTA-int LTR MaLR 1 1649 -2 2232 119 182 0 chr3 24819605 24819967 -202704611 + MSTA LTR MaLR 1 428 0 25 0 0 0 chr3 24820808 24820833 -202703745 + AT_rich Low_complexity Low_complexity 1 25 0 359 244 12 0 chr3 24821739 24821821 -202702757 + MLT1L LTR MaLR 170 252 -363 498 199 173 58 chr3 24821862 24822053 -202702525 + MLT1L LTR MaLR 341 553 -62 1379 142 0 27 chr3 24823014 24823239 -202701339 - AluJo SINE Alu -8 304 86 3689 274 111 24 chr3 24825113 24825217 -202699361 - HAL1 LINE L1 -60 2447 2353 191 59 0 29 chr3 24825217 24825251 -202699327 + (TCTA)n Simple_repeat Simple_repeat 1 33 0 1544 173 21 32 chr3 24825251 24825535 -202699043 - AluJb SINE Alu -31 281 1 3689 274 111 24 chr3 24825535 24826275 -202698303 - HAL1 LINE L1 -154 2353 1679 2309 94 0 0 chr3 24826275 24826572 -202698006 - AluSx SINE Alu -15 297 1 3689 274 111 24 chr3 24826572 24827940 -202696638 - HAL1 LINE L1 -828 1679 2 6627 128 68 10 chr3 24828284 24829448 -202695130 + Tigger3b DNA MER2_type 1 1231 0 1590 153 0 0 chr3 24829568 24829804 -202694774 + AluSx SINE Alu 1 236 -76 213 39 0 0 chr3 24829819 24829845 -202694733 + (A)n Simple_repeat Simple_repeat 1 26 0 21 82 0 0 chr3 24830120 24830169 -202694409 + AT_rich Low_complexity Low_complexity 1 49 0 2663 243 77 35 chr3 24830906 24831881 -202692697 - L2 LINE L2 -256 3057 2038 625 326 158 18 chr3 24832209 24832602 -202691976 + LTR16A LTR ERVL 1 448 -2 4333 195 46 6 chr3 24832944 24834519 -202690059 - L1MB7 LINE L1 -5 6677 5040 3371 256 24 28 chr3 24834542 24835691 -202688887 - L1MB7 LINE L1 -4543 2103 960 1096 238 125 7 chr3 24835711 24836014 -202688564 - L1MB7 LINE L1 -6187 355 17 375 311 46 38 chr3 24836133 24836553 -202688025 - L1MC/D LINE L1 -374 5747 5334 1563 231 127 65 chr3 24837201 24837372 -202687206 + MLT1E2 LTR MaLR 4 163 -463 1608 46 0 0 chr3 24837372 24837569 -202687009 - L1PA4 LINE L1 -3 6152 5956 1563 231 127 65 chr3 24837569 24837978 -202686600 + MLT1E2 LTR MaLR 163 620 -6 556 286 132 42 chr3 24837980 24838445 -202686133 - L1MC/D LINE L1 -2757 3389 2875 538 287 97 34 chr3 24838544 24838896 -202685682 - HAL1 LINE L1 -855 1652 1279 291 271 186 43 chr3 24839496 24839636 -202684942 - MIR SINE MIR -55 207 48 1687 112 9 124 chr3 24839663 24840029 -202684549 + AluSx SINE Alu 1 302 0 25 0 0 0 chr3 24840038 24840063 -202684515 + AT_rich Low_complexity Low_complexity 1 25 0 224 186 115 97 chr3 24840245 24840358 -202684220 + L2 LINE L2 3148 3262 -10 946 184 203 0 chr3 24840395 24840661 -202683917 - MER33 DNA MER1_type 0 324 5 2414 90 0 3 chr3 24841236 24841547 -202683031 + AluSx SINE Alu 1 310 -2 716 182 122 0 chr3 24841599 24841747 -202682831 + AluJo SINE Alu 1 166 -146 1019 186 6 11 chr3 24841748 24841925 -202682653 + AluJb SINE Alu 109 284 -28 1219 117 34 0 chr3 24841950 24842129 -202682449 - MER2 DNA MER2_type -160 185 1 679 264 39 35 chr3 24842487 24842741 -202681837 + LTR16A LTR ERVL 12 266 -184 2434 108 19 0 chr3 24843573 24843933 -202680645 + L1PA13 LINE L1 5786 6152 -11 191 304 65 58 chr3 24844020 24844158 -202680420 - L2 LINE L2 -454 2860 2722 251 326 39 23 chr3 24844290 24844419 -202680159 + MIR3 SINE MIR 33 163 -45 407 296 99 56 chr3 24844665 24844807 -202679771 + MER91A DNA MER1_type 29 176 -20 536 177 192 0 chr3 24845724 24845854 -202678724 - MIR SINE MIR -85 177 23 209 284 0 15 chr3 24846705 24846772 -202677806 + (TATATG)n Simple_repeat Simple_repeat 3 68 0 1935 154 39 3 chr3 24846855 24847186 -202677392 + MER2 DNA MER2_type 2 344 0 285 206 48 16 chr3 24848094 24848157 -202676421 + L2 LINE L2 3249 3313 0 220 302 0 0 chr3 24848641 24848694 -202675884 - MIR3 SINE MIR -11 197 145 202 305 67 19 chr3 24851620 24851725 -202672853 - MIR3 SINE MIR -9 199 90 2259 87 14 0 chr3 24852468 24852755 -202671823 - AluSc SINE Alu -15 294 4 21 36 0 0 chr3 24852791 24852819 -202671759 + AT_rich Low_complexity Low_complexity 1 28 0 265 313 12 0 chr3 24853515 24853595 -202670983 + MIR3 SINE MIR 122 202 -6 330 244 169 41 chr3 24854613 24854785 -202669793 - L2 LINE L2 0 3313 3120 693 183 57 118 chr3 24854953 24855199 -202669379 + L2 LINE L2 3076 3306 -7 781 289 118 20 chr3 24855244 24855684 -202668894 + L2 LINE L2 1536 2018 -1296 207 250 0 78 chr3 24855683 24855747 -202668831 + L2 LINE L2 3208 3266 -6 * 194 135 0 115 chr3 24856496 24856548 -202668030 + L2 LINE L2 3227 3272 0 23 0 0 0 chr3 24858801 24858824 -202665754 + AT_rich Low_complexity Low_complexity 1 23 0 197 270 79 0 chr3 24858857 24858920 -202665658 + L3 LINE CR1 321 388 -1189 418 341 7 0 chr3 24859124 24859262 -202665316 + MIR3 SINE MIR 67 205 -3 804 164 6 18 chr3 24859330 24859495 -202665083 + L1MA5 LINE L1 6133 6295 -5 317 291 152 93 chr3 24859538 24859967 -202664611 + L3 LINE CR1 750 1203 -374 218 319 101 65 chr3 24860096 24860265 -202664313 + L3 LINE CR1 1397 1571 -6 259 273 18 36 chr3 24860434 24860544 -202664034 + CT-rich Low_complexity Low_complexity 1 108 0 1643 190 0 24 chr3 24860880 24861175 -202663403 + AluJb SINE Alu 1 288 -24 1880 247 78 2 chr3 24862223 24862790 -202661788 + L1M4 LINE L1 4457 5066 -1080 2198 157 40 71 chr3 24862792 24863242 -202661336 + MER77 LTR ERV1 1 436 -169 10619 119 83 142 chr3 24863242 24863969 -202660609 - Tigger1 DNA MER2_type 0 2418 1649 2339 96 0 0 chr3 24863969 24864272 -202660306 - AluSx SINE Alu -9 303 1 10619 119 83 142 chr3 24864272 24866065 -202658513 - Tigger1 DNA MER2_type -769 1649 48 1365 273 61 64 chr3 24866121 24866858 -202657720 + L2 LINE L2 2452 3209 -104 366 278 130 0 chr3 24868751 24868866 -202655712 + L2 LINE L2 3184 3313 0 322 208 0 28 chr3 24868967 24869039 -202655539 + L2 LINE L2 3244 3313 0 1349 208 30 33 chr3 24869461 24869793 -202654785 - L1ME2 LINE L1 -6 6158 5828 1095 184 72 34 chr3 24869796 24870003 -202654575 - MER8 DNA MER2_type -3 236 22 2264 200 87 22 chr3 24870015 24870722 -202653856 - L1ME2 LINE L1 -335 5829 5075 242 226 426 9 chr3 24870751 24870866 -202653712 - MER77 LTR ERV1 -6 599 437 441 273 210 43 chr3 24870880 24871180 -202653398 - L2 LINE L2 -911 2403 2054 2022 106 0 7 chr3 24871188 24871480 -202653098 - AluSc SINE Alu -19 290 1 2389 73 7 0 chr3 24871737 24872040 -202652538 + AluY SINE Alu 1 305 -6 194 107 71 0 chr3 24872365 24872421 -202652157 + (TA)n Simple_repeat Simple_repeat 1 60 0 759 253 185 49 chr3 24872602 24873210 -202651368 - L2 LINE L2 -4 3309 2616 257 222 130 37 chr3 24873290 24873398 -202651180 + L2 LINE L2 3190 3307 -6 26 0 0 0 chr3 24874133 24874159 -202650419 + AT_rich Low_complexity Low_complexity 1 26 0 1602 142 31 43 chr3 24876687 24877011 -202647567 - MER33 DNA MER1_type 0 324 5 240 254 57 49 chr3 24877284 24877406 -202647172 + L1ME4a LINE L1 5923 6045 -76 589 186 0 0 chr3 24877472 24877574 -202647004 - AluJb SINE Alu -30 282 181 1308 183 4 4 chr3 24877574 24877803 -202646775 - AluJb SINE Alu -83 229 1 25 51 0 0 chr3 24877826 24877865 -202646713 + AT_rich Low_complexity Low_complexity 1 39 0 2109 163 18 3 chr3 24878052 24878395 -202646183 - MER7A DNA MER2_type 0 346 1 2519 70 0 0 chr3 24878457 24878757 -202645821 - AluY SINE Alu -11 300 1 1439 156 105 8 chr3 24878921 24879178 -202645400 + AluJo SINE Alu 1 282 -30 1040 172 0 17 chr3 24879192 24879372 -202645206 + AluSg/x SINE Alu 134 310 0 188 368 172 14 chr3 24880592 24880801 -202643777 + MIR SINE MIR 9 250 -12 1805 220 47 4 chr3 24884315 24884779 -202639799 - Charlie4a DNA MER1_type -5 503 20 5150 139 41 5 chr3 24885454 24885610 -202638968 - L1PA16 LINE L1 0 6166 6017 222 37 0 0 chr3 24885610 24885637 -202638941 + (TCCC)n Simple_repeat Simple_repeat 3 29 0 5150 139 41 5 chr3 24885637 24886358 -202638220 - L1PA16 LINE L1 -149 6017 5257 6282 196 23 5 chr3 24886512 24887871 -202636707 - L1 LINE L1 -904 5242 3860 571 174 41 0 chr3 24887871 24887992 -202636586 + L1PA15-16 LINE L1 2350 2475 -4374 353 263 167 45 chr3 24888497 24888695 -202635883 - MIR SINE MIR -13 249 28 194 352 96 32 chr3 24889132 24889507 -202635071 + L2 LINE L2 1944 2342 -972 2080 90 0 8 chr3 24889563 24889830 -202634748 + AluSq SINE Alu 39 303 -10 243 255 0 0 chr3 24890014 24890065 -202634513 + GA-rich Low_complexity Low_complexity 2 52 0 1527 193 18 11 chr3 24891259 24891539 -202633039 + AluJo SINE Alu 1 282 -30 183 42 0 0 chr3 24891543 24891567 -202633011 + (CCAA)n Simple_repeat Simple_repeat 2 25 0 1751 173 66 18 chr3 24892039 24892374 -202632204 - MLT1A1 LTR MaLR 0 365 15 935 277 90 19 chr3 24892702 24893114 -202631464 + MLT1J1 LTR MaLR 4 444 -2 316 290 103 26 chr3 24893779 24893934 -202630644 + MIR3 SINE MIR 21 187 -21 422 219 181 48 chr3 24894317 24894609 -202629969 - Charlie7 DNA MER1_type 0 2612 2282 1836 230 130 15 chr3 24894636 24895284 -202629294 - Charlie7 DNA MER1_type -401 2211 1490 772 261 80 31 chr3 24895294 24895619 -202628959 - Charlie7 DNA MER1_type -2259 353 13 411 255 174 19 chr3 24895701 24895862 -202628716 + MER5A DNA MER1_type 4 189 0 241 279 269 18 chr3 24896062 24896281 -202628297 - L2 LINE L2 -61 3252 2979 1790 192 137 105 chr3 24896287 24897051 -202627527 + LTR1B LTR ERV1 1 982 -38 234 236 0 36 chr3 24897202 24897257 -202627321 + L2 LINE L2 3219 3271 -1 259 250 226 0 chr3 24899198 24899282 -202625296 - MIR3 SINE MIR -14 194 92 702 296 94 57 chr3 24899806 24900087 -202624491 + L2 LINE L2 2827 3096 -217 441 0 0 0 chr3 24900087 24900136 -202624442 + (CA)n Simple_repeat Simple_repeat 2 50 0 702 296 94 57 chr3 24900136 24900148 -202624430 + L2 LINE L2 3096 3106 -207 2053 121 4 0 chr3 24900148 24900428 -202624150 - AluSx SINE Alu -31 281 1 702 296 94 57 chr3 24900428 24900603 -202623975 + L2 LINE L2 3106 3313 0 2736 7 0 0 chr3 24901257 24901553 -202623025 - AluY SINE Alu -15 296 1 416 299 55 30 chr3 24902780 24902944 -202621634 + MIR3 SINE MIR 26 193 -15 254 192 77 67 chr3 24903514 24903618 -202620960 + MIR SINE MIR 73 177 -85 3779 197 83 70 chr3 24904310 24905392 -202619186 + LTR28 LTR ERV1 1 1735 -20 1706 84 0 0 chr3 24905428 24905641 -202618937 + AluSc SINE Alu 81 293 -16 344 368 48 6 chr3 24905679 24905845 -202618733 - MIR3 SINE MIR -34 174 2 315 309 81 16 chr3 24909640 24909763 -202614815 - L2 LINE L2 -1 3271 3141 679 297 41 5 chr3 24909814 24910033 -202614545 - MIR SINE MIR -15 247 21 297 0 0 0 chr3 24910193 24910226 -202614352 + (TTTA)n Simple_repeat Simple_repeat 1 33 0 1314 164 5 18 chr3 24910233 24910453 -202614125 - AluJo SINE Alu -24 288 72 248 247 0 155 chr3 24910651 24910748 -202613830 - L2 LINE L2 -2 3270 3189 325 340 38 19 chr3 24911200 24911359 -202613219 + MIR SINE MIR 20 181 -81 260 359 81 21 chr3 24911804 24912038 -202612540 - MIR SINE MIR -12 250 3 183 147 29 0 chr3 24912369 24912403 -202612175 - L2 LINE L2 -12 3301 3267 2143 109 14 0 chr3 24913294 24913587 -202610991 + AluY SINE Alu 1 297 -14 1566 164 3 40 chr3 24913587 24913891 -202610687 - AluJb SINE Alu -19 293 1 208 399 128 0 chr3 24914272 24914420 -202610158 - L2 LINE L2 0 3272 3106 1381 186 71 4 chr3 24914613 24914893 -202609685 + L1MC1 LINE L1 5732 6030 -303 2882 176 9 33 chr3 24914893 24915432 -202609146 - MER44D DNA MER2_type -24 581 1 1209 163 76 47 chr3 24915434 24915575 -202609003 + L1MC1 LINE L1 6048 6183 -161 2584 55 0 3 chr3 24915575 24915882 -202608696 + AluY SINE Alu 1 306 -5 1209 163 76 47 chr3 24915882 24916029 -202608549 + L1MC1 LINE L1 6183 6344 0 2263 99 7 0 chr3 24916786 24917090 -202607488 + AluSq SINE Alu 1 306 -7 779 196 33 13 chr3 24917981 24918134 -202606444 - MLT1C LTR MaLR -25 442 287 * 1401 152 81 108 chr3 24918130 24918499 -202606079 - MLT1C LTR MaLR -106 361 3 190 298 0 0 chr3 24918499 24918546 -202606032 + MIR3 SINE MIR 115 161 -47 213 170 64 0 chr3 24918818 24918865 -202605713 + L2 LINE L2 3262 3311 -2 228 370 48 27 chr3 24919410 24919556 -202605022 + L2 LINE L2 596 744 -2570 207 0 0 0 chr3 24919830 24919853 -202604725 + (T)n Simple_repeat Simple_repeat 1 23 0 324 284 9 37 chr3 24920209 24920318 -202604260 - L2 LINE L2 -5 3308 3203 1768 174 7 7 chr3 24920406 24920699 -202603879 - AluJb SINE Alu -19 293 1 266 288 23 45 chr3 24921037 24921169 -202603409 + L2 LINE L2 1823 1951 -1363 462 268 24 16 chr3 24921348 24921475 -202603103 + MER94 DNA DNA 7 134 0 200 304 146 79 chr3 24922103 24922343 -202602235 + L2 LINE L2 2933 3188 -84 27 0 0 0 chr3 24922759 24922786 -202601792 + AT_rich Low_complexity Low_complexity 1 27 0 24 67 0 0 chr3 24924220 24924265 -202600313 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr3 24924586 24924614 -202599964 + AT_rich Low_complexity Low_complexity 1 28 0 28 99 0 0 chr3 24925448 24925539 -202599039 + AT_rich Low_complexity Low_complexity 1 91 0 370 250 189 0 chr3 24930542 24930694 -202593884 + MER5A DNA MER1_type 4 189 0 533 158 4 214 chr3 24930838 24931072 -202593506 - MER5A DNA MER1_type -1 188 4 25 0 0 0 chr3 24931243 24931268 -202593310 + AT_rich Low_complexity Low_complexity 1 25 0 1541 208 29 44 chr3 24931676 24932061 -202592517 - MER89 LTR ERV1 -1 558 180 357 175 0 0 chr3 24932069 24932132 -202592446 - MER89 LTR ERV1 -496 63 1 270 254 0 0 chr3 24932869 24932924 -202591654 - L2 LINE L2 -5 3267 3213 5149 35 0 0 chr3 24933753 24934362 -202590216 + L1PA3 LINE L1 5544 6152 -3 2105 76 0 0 chr3 24935601 24935864 -202588714 + AluY SINE Alu 40 302 -9 313 269 106 34 chr3 24935911 24936119 -202588459 - L1MC4a LINE L1 -1949 6253 6031 1098 180 11 16 chr3 24936226 24936415 -202588163 + MER5A DNA MER1_type 1 188 -1 353 332 73 28 chr3 24936619 24936905 -202587673 - L1MC4a LINE L1 -1112 5428 5130 25 31 0 0 chr3 24936997 24937029 -202587549 + AT_rich Low_complexity Low_complexity 1 32 0 1516 160 93 15 chr3 24937049 24937318 -202587260 - AluJo SINE Alu -20 292 3 656 320 102 46 chr3 24937403 24938333 -202586245 - L1MC4a LINE L1 -2961 3579 2598 532 318 72 70 chr3 24938345 24939150 -202585428 + L1ME1 LINE L1 36 842 -5554 493 268 91 10 chr3 24939171 24939369 -202585209 + L1ME1 LINE L1 3631 3844 -2371 * 3054 233 78 40 chr3 24939365 24940334 -202584244 + L1ME1 LINE L1 4231 5162 -1073 2057 135 3 7 chr3 24940334 24940638 -202583940 + AluSx SINE Alu 1 303 -9 3054 233 78 40 chr3 24940638 24941297 -202583281 + L1ME1 LINE L1 5162 5944 -291 2258 104 0 3 chr3 24941297 24941595 -202582983 - AluSg SINE Alu -13 297 1 3054 233 78 40 chr3 24941595 24941828 -202582750 + L1ME1 LINE L1 5944 6167 -68 255 324 9 9 chr3 24942313 24942421 -202582157 - L1MC4a LINE L1 -6412 128 21 1617 200 10 13 chr3 24942437 24942747 -202581831 - AluJb SINE Alu -3 309 1 1297 212 85 184 chr3 24942750 24943881 -202580697 + L2 LINE L2 2310 3310 -3 1738 169 3 26 chr3 24943961 24944263 -202580315 + AluJb SINE Alu 2 296 -16 284 273 160 20 chr3 24944426 24944576 -202580002 - MIR3 SINE MIR -36 172 2 191 290 14 43 chr3 24945612 24945681 -202578897 - MIR SINE MIR -125 83 17 216 356 100 40 chr3 24946092 24946643 -202577935 + L2 LINE L2 945 1528 -1786 318 329 177 44 chr3 24946645 24947237 -202577341 + L2 LINE L2 2212 2882 -432 3162 273 129 27 chr3 24947521 24949049 -202575529 - L2 LINE L2 -5 3308 1640 1029 255 273 19 chr3 24949469 24950195 -202574383 - L2 LINE L2 -1661 1653 744 467 273 31 16 chr3 24950414 24950542 -202574036 - MIR SINE MIR -89 173 44 239 321 107 36 chr3 24951981 24952177 -202572401 - MIR SINE MIR -4 258 49 799 202 35 81 chr3 24953054 24953252 -202571326 - MER5A DNA MER1_type 0 189 1 192 77 0 0 chr3 24955938 24955964 -202568614 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 351 245 172 56 chr3 24957102 24957175 -202567403 - MIR SINE MIR 0 262 199 2454 58 0 0 chr3 24957175 24957469 -202567109 - AluY SINE Alu -17 294 1 351 245 172 56 chr3 24957469 24957628 -202566950 - MIR SINE MIR -63 199 3 251 288 183 26 chr3 24957939 24958092 -202566486 + L2 LINE L2 2560 2736 -578 25 51 0 0 chr3 24958720 24958759 -202565819 + AT_rich Low_complexity Low_complexity 1 39 0 264 303 8 23 chr3 24958772 24958904 -202565674 - L1ME LINE L1 -254 5867 5738 4472 23 6 0 chr3 24958921 24959453 -202565125 - L1P LINE L1 -1975 4171 3637 3147 173 14 2 chr3 24959556 24960376 -202564202 - L1M1 LINE L1 -745 5401 4711 1634 193 10 7 chr3 24960383 24960689 -202563889 - AluJb SINE Alu -5 307 1 333 233 10 0 chr3 24960718 24960815 -202563763 - L1MC4 LINE L1 -1339 7498 2521 327 261 0 23 chr3 24960875 24960963 -202563615 - L1MC4 LINE L1 -1339 6703 6618 21 0 0 0 chr3 24961064 24961085 -202563493 + AT_rich Low_complexity Low_complexity 1 21 0 7685 174 41 32 chr3 24961086 24962449 -202562129 + L1MB8 LINE L1 2921 4306 -1840 2405 75 0 3 chr3 24962449 24962744 -202561834 - AluY SINE Alu -13 298 5 7685 174 41 32 chr3 24962744 24963151 -202561427 + L1MB8 LINE L1 4306 4708 -1438 207 100 0 0 chr3 24963183 24963213 -202561365 + (TA)n Simple_repeat Simple_repeat 1 30 0 778 215 58 35 chr3 24963952 24964247 -202560331 + L1MB8 LINE L1 5759 6022 -156 1416 253 67 26 chr3 24964307 24965184 -202559394 - L1MC4 LINE L1 -4889 1534 1061 338 311 10 0 chr3 24965288 24965391 -202559187 - L1MC4 LINE L1 -5502 921 818 246 343 29 15 chr3 24965633 24965770 -202558808 - L1MC4 LINE L1 -6020 403 265 237 237 26 26 chr3 24965917 24965993 -202558585 - L1MCa LINE L1 -6331 95 20 1804 154 101 0 chr3 24966387 24966693 -202557885 - MER1B DNA MER1_type 0 337 1 645 218 8 8 chr3 24966810 24966943 -202557635 + FLAM_A SINE Alu 1 133 0 28 71 0 0 chr3 24967607 24967663 -202556915 + AT_rich Low_complexity Low_complexity 1 56 0 751 265 25 5 chr3 24968192 24968396 -202556182 + MER3 DNA MER1_type 2 209 0 5709 25 1 1 chr3 24969165 24969834 -202554744 - L1PA3 LINE L1 0 6155 5487 1857 156 28 0 chr3 24970301 24970589 -202553989 + AluSx SINE Alu 2 297 -15 336 96 39 0 chr3 24970776 24970828 -202553750 + MER65B LTR ERV1 1 54 -477 272 222 32 16 chr3 24970832 24970895 -202553683 - MER2 DNA MER2_type 0 345 282 * 495 270 107 19 chr3 24970874 24971033 -202553545 - MER8 DNA MER2_type -64 175 3 234 232 89 95 chr3 24971107 24971275 -202553303 + MER65B LTR ERV1 80 246 -285 1547 164 28 71 chr3 24971640 24971964 -202552614 - AluJb SINE Alu -2 310 1 220 341 57 0 chr3 24972027 24972115 -202552463 + L2 LINE L2 3133 3225 -47 425 299 129 7 chr3 24973629 24973806 -202550772 - MIR SINE MIR -48 214 22 1670 152 9 60 chr3 24974143 24974458 -202550120 - AluSx SINE Alu -10 302 4 5361 38 3 0 chr3 24976455 24977136 -202547442 - L1P LINE L1 -2465 3681 2999 10082 25 1 0 chr3 24977136 24979100 -202545478 + L1PA3 LINE L1 4194 6155 0 300 290 75 18 chr3 24979307 24979547 -202545031 - L1MC/D LINE L1 -755 5391 5213 189 359 43 11 chr3 24980155 24980247 -202544331 + MIR SINE MIR 29 123 -139 23 0 0 0 chr3 24980502 24980525 -202544053 + AT_rich Low_complexity Low_complexity 1 23 0 1512 175 38 15 chr3 24980757 24981020 -202543558 + AluJo SINE Alu 14 282 -30 388 295 160 6 chr3 24981347 24981503 -202543075 - MER5A DNA MER1_type -1 188 9 853 196 38 11 chr3 24982221 24982405 -202542173 - MER5A DNA MER1_type 0 189 1 190 137 0 39 chr3 24983243 24983294 -202541284 + (GAAAA)n Simple_repeat Simple_repeat 2 50 0 4224 54 6 0 chr3 24984220 24984755 -202539823 + L1PA7 LINE L1 5615 6152 -2 186 167 0 0 chr3 24984811 24984847 -202539731 + A-rich Low_complexity Low_complexity 2 37 0 23 68 0 0 chr3 24985438 24985482 -202539096 + AT_rich Low_complexity Low_complexity 1 44 0 183 42 0 0 chr3 24985701 24985725 -202538853 + (A)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr3 24986883 24986905 -202537673 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 24988663 24988684 -202535894 + AT_rich Low_complexity Low_complexity 1 21 0 462 315 25 47 chr3 24988772 24989051 -202535527 - MARNA DNA Mariner -238 348 76 366 349 60 36 chr3 24989170 24989419 -202535159 - L3 LINE CR1 -13 1564 1310 185 321 19 0 chr3 24989479 24989532 -202535046 + L2 LINE L2 3258 3311 -2 22 0 0 0 chr3 24989572 24989594 -202534984 + AT_rich Low_complexity Low_complexity 1 22 0 260 333 81 0 chr3 24990686 24990785 -202533793 - MIR SINE MIR -5 257 151 2171 109 6 3 chr3 24991195 24991507 -202533071 - AluSp SINE Alu 0 313 1 21 0 0 0 chr3 24991774 24991795 -202532783 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 24991963 24991998 -202532580 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 24994350 24994373 -202530205 + AT_rich Low_complexity Low_complexity 1 23 0 1698 249 75 12 chr3 24994379 24995018 -202529560 + L1M4 LINE L1 2569 3247 -2899 1528 201 81 26 chr3 24995024 24995495 -202529083 + L1M4 LINE L1 4850 5346 -812 1871 146 21 0 chr3 24995505 24995793 -202528785 - AluSx SINE Alu -18 294 1 931 146 176 10 chr3 24995802 24996007 -202528571 - L1MD1 LINE L1 -2 6240 6002 381 209 135 0 chr3 24996008 24996171 -202528407 - L1M4 LINE L1 -2889 3257 3073 242 245 147 35 chr3 24996191 24996334 -202528244 - L1ME LINE L1 -346 5775 5617 25 0 0 0 chr3 24996474 24996499 -202528079 + AT_rich Low_complexity Low_complexity 1 25 0 321 183 17 0 chr3 24996512 24996572 -202528006 - AluJo SINE Alu -122 180 120 657 159 0 43 chr3 24996586 24996724 -202527854 - FLAM_C SINE Alu -1 142 11 32 91 0 0 chr3 24996868 24996956 -202527622 + AT_rich Low_complexity Low_complexity 1 88 0 279 186 0 0 chr3 24997004 24997063 -202527515 - MER57A LTR ERV1 -28 375 317 430 311 0 25 chr3 24997346 24997465 -202527113 - L2 LINE L2 -2 3311 3196 248 284 11 0 chr3 24997628 24997716 -202526862 - L1M4 LINE L1 -3905 2241 2153 314 247 86 0 chr3 24997874 24997955 -202526623 - MIR SINE MIR 0 262 175 349 325 77 6 chr3 24998177 24998346 -202526232 - HAL1b LINE L1 -607 741 561 490 229 84 89 chr3 24998894 24999036 -202525542 + MIR SINE MIR 50 193 -69 1750 166 0 7 chr3 24999036 24999368 -202525210 + AluJb SINE Alu 1 330 0 490 229 84 89 chr3 24999368 24999438 -202525140 + MIR SINE MIR 193 262 0 2013 144 0 0 chr3 25000605 25000904 -202523674 + AluSx SINE Alu 1 299 -13 264 202 0 53 chr3 25001666 25001760 -202522818 + T-rich Low_complexity Low_complexity 5 93 0 284 218 26 0 chr3 25002205 25002283 -202522295 - MER5C DNA MER1_type -168 156 77 470 265 61 30 chr3 25002492 25002624 -202521954 - MIR SINE MIR -10 252 117 701 126 8 17 chr3 25002664 25002783 -202521795 - FLAM_A SINE Alu -15 118 1 23 33 0 0 chr3 25003017 25003047 -202521531 + AT_rich Low_complexity Low_complexity 1 30 0 267 79 0 0 chr3 25004203 25004241 -202520337 + (CA)n Simple_repeat Simple_repeat 2 39 0 629 191 72 0 chr3 25004444 25004596 -202519982 + MER45A DNA AcHobo 3 177 -1 282 224 56 88 chr3 25004650 25004775 -202519803 + MIR SINE MIR 113 233 -29 1562 181 44 3 chr3 25004903 25005196 -202519382 + AluSg SINE Alu 1 305 -5 24 32 0 0 chr3 25005406 25005437 -202519141 + AT_rich Low_complexity Low_complexity 1 31 0 1570 218 30 3 chr3 25006033 25006364 -202518214 - MER58B DNA MER1_type -1 340 1 2645 174 56 13 chr3 25006563 25007160 -202517418 + L1MB7 LINE L1 5548 6181 -2 2031 103 48 10 chr3 25008420 25008711 -202515867 + AluSc SINE Alu 1 302 -7 22 35 0 0 chr3 25011186 25011215 -202513363 + AT_rich Low_complexity Low_complexity 1 29 0 296 280 99 54 chr3 25011311 25011550 -202513028 - L1ME LINE L1 -404 5717 5473 212 290 9 56 chr3 25012660 25012767 -202511811 - L2 LINE L2 -60 3253 3152 1542 154 25 87 chr3 25012767 25013123 -202511455 - MER44D DNA MER2_type 0 609 6 180 0 0 0 chr3 25013123 25013143 -202511435 + (TACTG)n Simple_repeat Simple_repeat 1 20 0 438 20 0 0 chr3 25013174 25013225 -202511353 + (TG)n Simple_repeat Simple_repeat 2 52 0 213 262 16 0 chr3 25013233 25013294 -202511284 + L2 LINE L2 3208 3269 -3 411 333 56 14 chr3 25014580 25014796 -202509782 + MLT1L LTR MaLR 389 613 -2 25 51 0 0 chr3 25014932 25014971 -202509607 + AT_rich Low_complexity Low_complexity 1 39 0 677 298 12 0 chr3 25015318 25015489 -202509089 - MIR SINE MIR -89 173 1 400 305 62 59 chr3 25015522 25015698 -202508880 - L1ME LINE L1 -1495 4651 4472 1842 164 3 7 chr3 25015698 25015996 -202508582 - AluJo SINE Alu -15 297 1 400 305 62 59 chr3 25015996 25016140 -202508438 - L1ME LINE L1 -1674 4472 4330 27 81 0 0 chr3 25016468 25016530 -202508048 + AT_rich Low_complexity Low_complexity 1 62 0 313 341 171 24 chr3 25018136 25018347 -202506231 + MIR SINE MIR 2 243 -19 2563 124 18 0 chr3 25019568 25019964 -202504614 + MER57A LTR ERV1 1 403 0 222 323 39 31 chr3 25020338 25020465 -202504113 - MIR3 SINE MIR -16 192 65 22 0 0 0 chr3 25021458 25021480 -202503098 + AT_rich Low_complexity Low_complexity 1 22 0 1637 202 78 53 chr3 25021485 25021700 -202502878 - L1MC5 LINE L1 -44 7917 7709 1561 186 0 46 chr3 25021700 25022027 -202502551 + AluJo SINE Alu 1 312 0 1637 202 78 53 chr3 25022027 25022411 -202502167 - L1MC5 LINE L1 -252 7709 7303 771 237 237 49 chr3 25022449 25022897 -202501681 + MLT1G3 LTR MaLR 9 540 -27 824 188 31 71 chr3 25022910 25023134 -202501444 - L1MC5 LINE L1 -682 7279 7065 670 192 0 15 chr3 25024023 25024153 -202500425 + MLT1J1 LTR MaLR 20 147 -299 955 219 196 29 chr3 25024319 25024661 -202499917 + MLT1F LTR MaLR 136 534 -8 686 271 33 37 chr3 25024841 25025114 -202499464 + MLT1F-int LTR MaLR 292 563 -808 30 0 0 0 chr3 25025336 25025366 -202499212 + AT_rich Low_complexity Low_complexity 1 30 0 6620 54 18 8 chr3 25025513 25026385 -202498193 - L1PA7 LINE L1 -13 6141 5261 5687 92 0 0 chr3 25026375 25027171 -202497407 + L1P LINE L1 4408 5203 -943 * 625 171 45 0 chr3 25027179 25027290 -202497288 + MER20 DNA MER1_type 104 219 0 184 300 20 0 chr3 25027400 25027450 -202497128 + L2 LINE L2 3254 3304 -9 274 367 25 8 chr3 25027505 25027625 -202496953 + MIR3 SINE MIR 41 162 -46 237 313 62 0 chr3 25027800 25027880 -202496698 + L2 LINE L2 3229 3313 0 25 31 0 0 chr3 25028539 25028571 -202496007 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr3 25029712 25029742 -202494836 + AT_rich Low_complexity Low_complexity 1 30 0 263 150 0 0 chr3 25030015 25030055 -202494523 - U6 snRNA snRNA -66 41 2 520 222 167 11 chr3 25030074 25030254 -202494324 + MER3 DNA MER1_type 1 208 -1 24 53 0 0 chr3 25030258 25030296 -202494282 + AT_rich Low_complexity Low_complexity 1 38 0 1719 166 7 24 chr3 25030516 25030811 -202493767 - AluJb SINE Alu -22 290 1 197 261 98 54 chr3 25031354 25031446 -202493132 + MIR SINE MIR 120 215 -47 185 177 32 48 chr3 25031734 25031796 -202492782 - L2 LINE L2 -62 3251 3191 22 35 0 0 chr3 25032024 25032053 -202492525 + AT_rich Low_complexity Low_complexity 1 29 0 689 301 40 78 chr3 25032624 25033133 -202491445 + L2 LINE L2 2786 3296 -17 2125 154 39 31 chr3 25033476 25034020 -202490558 + MLT2A2 LTR ERVL 1 554 0 259 159 0 32 chr3 25034158 25034221 -202490357 + (TATATG)n Simple_repeat Simple_repeat 3 63 0 317 253 12 12 chr3 25034227 25034310 -202490268 + L1MC4 LINE L1 6614 6696 -1346 367 228 86 10 chr3 25035371 25035494 -202489084 - MIR SINE MIR -41 167 73 1124 182 15 5 chr3 25036489 25036692 -202487886 - MER2 DNA MER2_type -135 210 6 22 56 0 0 chr3 25038409 25038445 -202486133 + AT_rich Low_complexity Low_complexity 1 36 0 741 169 42 131 chr3 25040915 25041151 -202483427 + MIR SINE MIR 2 216 -46 432 0 0 0 chr3 25041160 25041208 -202483370 + (CA)n Simple_repeat Simple_repeat 2 49 0 1208 183 24 62 chr3 25041219 25041508 -202483070 - AluJo SINE Alu -30 282 5 23 33 0 0 chr3 25041519 25041549 -202483029 + AT_rich Low_complexity Low_complexity 1 30 0 13942 137 37 7 chr3 25041959 25044302 -202480276 + Tigger1 DNA MER2_type 2 2414 -4 248 158 0 0 chr3 25044910 25044948 -202479630 - L2 LINE L2 -13 3300 3263 274 269 0 15 chr3 25045608 25045675 -202478903 - MIR SINE MIR -103 159 94 378 321 0 15 chr3 25046091 25046228 -202478350 + MER117 DNA MER1_type 12 146 -51 23 33 0 0 chr3 25046404 25046434 -202478144 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 25047963 25047984 -202476594 + AT_rich Low_complexity Low_complexity 1 21 0 241 239 231 30 chr3 25048294 25048428 -202476150 - MIR SINE MIR -51 211 51 1921 146 0 7 chr3 25048465 25048766 -202475812 + AluJb SINE Alu 3 301 -11 183 290 43 65 chr3 25049011 25049104 -202475474 - MIR SINE MIR -56 206 116 237 178 0 0 chr3 25051512 25051557 -202473021 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 28 0 0 0 chr3 25053216 25053244 -202471334 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 25054177 25054205 -202470373 + AT_rich Low_complexity Low_complexity 1 28 0 355 287 111 49 chr3 25055952 25056196 -202468382 + L1M4 LINE L1 3 261 -6281 2293 135 19 6 chr3 25056399 25056763 -202467815 - THE1C LTR MaLR -6 369 1 8926 111 37 94 chr3 25056769 25058433 -202466145 - THE1C-int LTR MaLR -12 1568 1 2551 109 5 11 chr3 25058433 25058810 -202465768 - THE1C LTR MaLR 0 375 1 249 158 0 61 chr3 25058915 25058997 -202465581 - THE1C LTR MaLR -297 78 2 397 272 25 38 chr3 25059039 25059215 -202465363 + L1M4 LINE L1 533 926 -5720 569 253 65 7 chr3 25059511 25059665 -202464913 + MIR SINE MIR 100 262 0 1677 196 86 24 chr3 25060242 25060615 -202463963 + MSTD LTR MaLR 1 396 0 198 0 0 0 chr3 25060868 25060890 -202463688 + (TG)n Simple_repeat Simple_repeat 1 22 0 347 160 13 0 chr3 25060894 25060969 -202463609 + GA-rich Low_complexity Low_complexity 1 76 0 184 265 118 0 chr3 25061040 25061108 -202463470 - MER5B DNA MER1_type -78 100 25 2357 113 19 11 chr3 25061630 25062002 -202462576 + THE1C LTR MaLR 1 375 0 26 64 0 0 chr3 25062232 25062279 -202462299 + AT_rich Low_complexity Low_complexity 1 47 0 1640 169 33 0 chr3 25063649 25063922 -202460656 + AluJb SINE Alu 1 282 -30 1908 154 0 0 chr3 25063939 25064243 -202460335 - AluSx SINE Alu 0 308 5 382 272 204 59 chr3 25064481 25064981 -202459597 - L2 LINE L2 0 3313 2738 313 253 40 73 chr3 25065208 25065358 -202459220 + L1ME LINE L1 3 147 -5923 243 287 39 23 chr3 25065830 25065959 -202458619 + L1ME LINE L1 329 459 -5611 267 287 32 11 chr3 25066036 25066130 -202458448 + L1ME LINE L1 447 542 -5541 215 209 31 31 chr3 25066157 25066286 -202458292 + GA-rich Low_complexity Low_complexity 4 132 0 512 240 42 31 chr3 25066294 25066486 -202458092 + L1ME LINE L1 542 735 -5345 1545 202 42 42 chr3 25066506 25066932 -202457646 + LTR56 LTR ERV1 20 445 0 700 220 39 35 chr3 25066979 25067238 -202457340 + L1ME LINE L1 787 1046 -5037 200 217 0 0 chr3 25067532 25067578 -202457000 + A-rich Low_complexity Low_complexity 1 46 0 536 264 52 20 chr3 25067639 25067889 -202456689 - L1ME4a LINE L1 -187 5934 5677 309 218 13 39 chr3 25068550 25068628 -202455950 + MER58 DNA MER1_type 27 102 -113 563 195 235 23 chr3 25068673 25068830 -202455748 - MER5C DNA MER1_type -54 270 148 1814 170 12 23 chr3 25068830 25069172 -202455406 + MER44D DNA MER2_type 1 608 -1 563 195 235 23 chr3 25069172 25069235 -202455343 - MER5C DNA MER1_type -176 148 3 655 346 213 28 chr3 25069597 25069996 -202454582 - L2 LINE L2 -710 2604 2280 2175 72 10 3 chr3 25069996 25070287 -202454291 + AluY SINE Alu 1 293 -18 655 346 213 28 chr3 25070287 25070967 -202453611 - L2 LINE L2 -1034 2280 1325 366 256 0 22 chr3 25071318 25071408 -202453170 + FRAM/FAM SINE Alu 1 86 -80 * 4909 141 9 20 chr3 25071407 25072246 -202452332 - Tigger1 DNA MER2_type -570 1848 1019 12194 117 16 25 chr3 25072258 25074645 -202449933 + L1P3 LINE L1 6 2413 -4048 2209 81 6 31 chr3 25074614 25074936 -202449642 + L1PA7 LINE L1 5623 5936 -533 * 1139 62 0 0 chr3 25074936 25075078 -202449500 + L1PA7 LINE L1 6312 6457 -12 965 105 37 19 chr3 25075078 25075240 -202449338 + AluSq SINE Alu 134 298 -15 659 96 0 0 chr3 25075241 25075335 -202449243 + L1M1 LINE L1 2626 2719 -4846 * 2259 134 37 68 chr3 25075332 25075941 -202448637 + L1M1 LINE L1 3266 3876 -3689 215 152 0 0 chr3 25276379 25276412 -202248166 - MIR SINE MIR -10 252 220 235 301 140 0 chr3 25276999 25277092 -202247486 - MER94 DNA DNA -1 133 28 200 367 42 33 chr3 25277419 25277539 -202247039 + L2 LINE L2 3145 3265 -7 401 273 64 48 chr3 25279168 25279355 -202245223 + MIR3 SINE MIR 19 208 0 237 98 0 0 chr3 25280143 25280184 -202244394 + (A)n Simple_repeat Simple_repeat 1 41 0 213 121 0 0 chr3 25281105 25281138 -202243440 + (A)n Simple_repeat Simple_repeat 1 33 0 459 0 0 0 chr3 25281141 25281192 -202243386 + (CA)n Simple_repeat Simple_repeat 1 51 0 211 170 0 43 chr3 25282421 25282468 -202242110 + CT-rich Low_complexity Low_complexity 3 47 0 474 273 35 42 chr3 25283191 25283334 -202241244 - MIR3 SINE MIR -34 174 33 1035 172 10 34 chr3 25285688 25285897 -202238681 - MER3 DNA MER1_type -5 204 1 210 294 0 0 chr3 25286931 25286982 -202237596 - MIR3 SINE MIR -7 201 151 295 330 56 30 chr3 25287085 25287282 -202237296 - MIR3 SINE MIR -4 204 3 607 286 70 46 chr3 25287789 25288030 -202236548 + MIR SINE MIR 10 256 -6 1325 208 124 67 chr3 25288103 25288579 -202235999 + MLT1D LTR MaLR 3 505 0 246 128 0 0 chr3 25289254 25289293 -202235285 + (A)n Simple_repeat Simple_repeat 1 39 0 1544 196 32 4 chr3 25289801 25290081 -202234497 + AluJb SINE Alu 1 288 -24 330 269 110 44 chr3 25290130 25290312 -202234266 - MARNA DNA Mariner -210 376 183 328 267 114 58 chr3 25290735 25290931 -202233647 + MIR3 SINE MIR 9 214 -48 233 217 0 0 chr3 25291176 25291222 -202233356 + A-rich Low_complexity Low_complexity 5 50 0 318 50 0 0 chr3 25291260 25291300 -202233278 + (GA)n Simple_repeat Simple_repeat 1 40 0 201 258 98 45 chr3 25292302 25292434 -202232144 + L2 LINE L2 1379 1517 -1797 373 125 16 0 chr3 25292557 25292621 -202231957 - MSTD LTR MaLR 0 396 332 491 168 198 0 chr3 25293245 25293346 -202231232 - MER5B DNA MER1_type -57 121 1 321 208 185 77 chr3 25293792 25293886 -202230692 + MER5A DNA MER1_type 35 149 -40 809 112 0 9 chr3 25293886 25294054 -202230524 + FLAM_C SINE Alu 2 168 0 321 208 185 77 chr3 25294054 25294088 -202230490 + MER5A DNA MER1_type 149 178 -11 199 298 0 85 chr3 25294782 25294876 -202229702 - MIR SINE MIR -60 202 117 1196 238 107 56 chr3 25295015 25295465 -202229113 + L2 LINE L2 2841 3313 0 372 293 47 0 chr3 25295463 25295569 -202229009 - MIR SINE MIR -65 197 87 * 725 152 27 38 chr3 25295571 25295755 -202228823 + MER53 DNA DNA 1 182 -7 373 311 43 51 chr3 25297038 25297295 -202227283 + MLT1K LTR MaLR 169 423 -165 269 273 0 0 chr3 25297422 25297488 -202227090 + MLT1K LTR MaLR 517 582 -6 198 238 16 79 chr3 25297505 25297568 -202227010 - MIR SINE MIR -111 151 93 653 231 98 0 chr3 25297649 25297852 -202226726 + MER112 DNA MER1_type 1 223 -37 860 311 202 10 chr3 25298159 25298481 -202226097 + L2 LINE L2 2237 2496 -817 2217 124 21 32 chr3 25298481 25298860 -202225718 - THE1C LTR MaLR 0 375 1 860 311 202 10 chr3 25298860 25299361 -202225217 + L2 LINE L2 2496 3217 -96 370 268 179 0 chr3 25299361 25299529 -202225049 - MER110 LTR ERV1 0 491 294 4232 46 51 2 chr3 25299547 25300092 -202224486 - L1PA7 LINE L1 -8 6146 5575 2106 131 20 0 chr3 25300106 25300411 -202224167 - AluJb SINE Alu -1 311 1 329 192 192 24 chr3 25300411 25300536 -202224042 - MER110A LTR ERV1 -127 341 196 305 226 173 12 chr3 25300597 25300765 -202223813 - MER110A LTR ERV1 -273 195 1 353 233 14 0 chr3 25300782 25300855 -202223723 + MIR SINE MIR 189 262 0 1939 137 60 64 chr3 25301398 25301867 -202222711 - LTR37B LTR ERV1 -1 467 1 207 0 0 0 chr3 25302001 25302024 -202222554 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 233 116 0 23 chr3 25304526 25304569 -202220009 + (TC)n Simple_repeat Simple_repeat 1 42 0 2423 184 39 28 chr3 25304644 25305188 -202219390 + MER44D DNA MER2_type 1 605 0 319 206 98 11 chr3 25305229 25305321 -202219257 - L1MCa LINE L1 -4335 2091 1992 309 183 17 9 chr3 25305326 25305441 -202219137 + (TA)n Simple_repeat Simple_repeat 2 117 0 213 178 0 22 chr3 25306279 25306324 -202218254 - L2 LINE L2 0 3313 3270 236 229 76 93 chr3 25309338 25309401 -202215177 + MER5B DNA MER1_type 1 63 -115 513 0 0 0 chr3 25309401 25309458 -202215120 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 236 229 76 93 chr3 25309458 25309512 -202215066 + MER5B DNA MER1_type 63 116 -62 250 171 0 0 chr3 25309768 25309809 -202214769 - MIR SINE MIR -71 137 97 425 294 46 111 chr3 25310004 25310372 -202214206 - L2 LINE L2 0 3272 2929 836 312 90 16 chr3 25310691 25311259 -202213319 - MLT1L LTR MaLR -2 586 9 548 295 193 0 chr3 25312050 25312257 -202212321 + MIR SINE MIR 1 247 -15 2265 152 9 37 chr3 25312669 25312996 -202211582 + MSTB1 LTR MaLR 5 319 -113 2861 7 0 0 chr3 25312996 25313306 -202211272 - AluYa5 SINE Alu -1 310 1 2265 152 9 37 chr3 25313306 25313411 -202211167 + MSTB1 LTR MaLR 319 425 -7 298 296 112 13 chr3 25313427 25313579 -202210999 - MIR SINE MIR -48 214 48 521 243 73 73 chr3 25313690 25313962 -202210616 - MLT1H LTR MaLR -221 328 57 948 131 65 0 chr3 25314523 25314676 -202209902 + MER5A DNA MER1_type 1 163 -26 30 0 0 0 chr3 25315416 25315446 -202209132 + AT_rich Low_complexity Low_complexity 1 30 0 2251 106 0 3 chr3 25315607 25315921 -202208657 - AluSc SINE Alu 0 309 1 201 196 0 0 chr3 25316573 25316619 -202207959 + GA-rich Low_complexity Low_complexity 4 49 0 31 0 0 0 chr3 25316665 25316696 -202207882 + AT_rich Low_complexity Low_complexity 1 31 0 241 333 95 24 chr3 25317231 25317357 -202207221 + L2 LINE L2 3138 3272 0 473 249 44 68 chr3 25318383 25318588 -202205990 + MIR SINE MIR 8 207 -55 232 195 0 0 chr3 25318652 25318693 -202205885 - Alu SINE Alu -176 126 86 795 230 83 15 chr3 25318693 25318897 -202205681 - AluJo SINE Alu -92 220 3 1279 208 27 46 chr3 25318955 25319321 -202205257 + L1M4 LINE L1 3976 4334 -1812 466 303 7 14 chr3 25319322 25319467 -202205111 + MIR SINE MIR 110 253 -9 735 259 162 44 chr3 25319483 25320001 -202204577 + L3 LINE CR1 858 1436 -141 267 327 35 9 chr3 25320006 25320119 -202204459 - MIR SINE MIR -111 151 36 7158 28 2 2 chr3 25321555 25322800 -202201778 + L1PA4 LINE L1 4908 6151 -4 326 294 33 0 chr3 25323028 25323120 -202201458 + MIR SINE MIR 53 147 -61 202 200 0 0 chr3 25323367 25323407 -202201171 + CT-rich Low_complexity Low_complexity 2 41 0 296 217 75 19 chr3 25323735 25323841 -202200737 - MER103 DNA DNA -45 121 10 19275 158 21 6 chr3 25323875 25327324 -202197254 + L1M1 LINE L1 10 3512 -4053 2275 97 15 59 chr3 25327324 25327716 -202196862 + L1MA1 LINE L1 5928 6302 0 19275 158 21 6 chr3 25327716 25327736 -202196842 + L1M1 LINE L1 3512 3530 -4035 260 268 37 0 chr3 25327998 25328080 -202196498 - MLT1K LTR MaLR -23 565 481 679 288 57 5 chr3 25328121 25328333 -202196245 - MLT1K LTR MaLR -186 402 180 344 181 14 14 chr3 25328362 25328434 -202196144 - MLT1K LTR MaLR -505 83 12 459 271 8 31 chr3 25329046 25329175 -202195403 - L2 LINE L2 0 3313 3188 1959 137 3 40 chr3 25329336 25329686 -202194892 + MER1B DNA MER1_type 1 337 0 21 36 0 0 chr3 25331940 25331968 -202192610 + AT_rich Low_complexity Low_complexity 1 28 0 238 233 86 55 chr3 25332993 25333156 -202191422 + HAL1 LINE L1 1002 1169 -1338 771 273 101 12 chr3 25333178 25333665 -202190913 + HAL1 LINE L1 1234 1763 -744 311 233 10 124 chr3 25334200 25334402 -202190176 + LTR16A LTR ERVL 266 444 -6 320 301 0 0 chr3 25334560 25334653 -202189925 + HAL1 LINE L1 1823 1915 -592 340 217 174 9 chr3 25334743 25334858 -202189720 + MIR SINE MIR 79 212 -50 22 35 0 0 chr3 25336297 25336326 -202188252 + AT_rich Low_complexity Low_complexity 1 29 0 191 61 30 0 chr3 25337259 25337292 -202187286 + (CA)n Simple_repeat Simple_repeat 2 35 0 1435 237 122 37 chr3 25337582 25337805 -202186773 + L2 LINE L2 2427 2630 -683 1922 149 7 13 chr3 25337805 25338106 -202186472 + AluSq SINE Alu 1 299 -14 1435 237 122 37 chr3 25338106 25338463 -202186115 + L2 LINE L2 2630 3062 -251 572 210 198 0 chr3 25339155 25339317 -202185261 + L2 LINE L2 3103 3296 -17 1702 169 10 24 chr3 25339325 25339615 -202184963 + AluJo SINE Alu 1 286 -26 279 0 0 0 chr3 25339617 25339648 -202184930 + (TG)n Simple_repeat Simple_repeat 2 32 0 223 237 250 0 chr3 25340118 25340194 -202184384 - MIR SINE MIR 0 262 168 1558 205 103 140 chr3 25340568 25340949 -202183629 + Charlie7 DNA MER1_type 490 884 -1728 2399 87 10 10 chr3 25340949 25341261 -202183317 - AluSq SINE Alu -1 312 1 1558 205 103 140 chr3 25341261 25342148 -202182430 + Charlie7 DNA MER1_type 884 1711 -901 2781 0 0 0 chr3 25343092 25343390 -202181188 - AluYa5 SINE Alu -13 298 1 1386 19 0 0 chr3 25343517 25343672 -202180906 - AluY SINE Alu 0 311 157 1380 233 94 40 chr3 25343672 25344224 -202180354 + Charlie7 DNA MER1_type 1855 2455 -157 2385 97 0 0 chr3 25344224 25344524 -202180054 - AluSc SINE Alu -9 300 1 1380 233 94 40 chr3 25344524 25344674 -202179904 + Charlie7 DNA MER1_type 2455 2595 -17 711 269 0 12 chr3 25344685 25344856 -202179722 + MER5A DNA MER1_type 1 169 -20 659 236 152 11 chr3 25345654 25345845 -202178733 - MIR SINE MIR -18 244 27 569 79 11 22 chr3 25347385 25347474 -202177104 - L1PB4 LINE L1 -556 5600 5513 * 815 153 60 22 chr3 25347468 25347651 -202176927 + L1PB4 LINE L1 5587 5776 -380 2090 161 15 10 chr3 25348946 25349337 -202175241 + L1PB4 LINE L1 5763 6155 -1 864 268 9 18 chr3 25349410 25349630 -202174948 - MIR SINE MIR 0 262 45 2259 121 0 0 chr3 25349694 25349999 -202174579 + AluSx SINE Alu 1 305 -7 309 278 0 0 chr3 25350000 25350072 -202174506 - MIR SINE MIR -189 73 2 291 289 77 51 chr3 25350887 25351043 -202173535 + MLT1L LTR MaLR 425 584 -31 784 198 97 34 chr3 25351257 25351464 -202173114 - LTR50 LTR ERVL -575 220 1 450 316 40 20 chr3 25352676 25352828 -202171750 + MIR SINE MIR 12 166 -96 325 268 149 57 chr3 25352843 25353213 -202171365 - MLT1J LTR MaLR -33 478 75 286 194 97 43 chr3 25353269 25353362 -202171216 + MIR SINE MIR 158 255 -7 689 272 93 57 chr3 25353422 25353723 -202170855 + MLT1I LTR MaLR 98 409 0 392 303 14 28 chr3 25354304 25354449 -202170129 - MIR SINE MIR -19 243 101 268 365 19 0 chr3 25354484 25354588 -202169990 - MIR SINE MIR -153 109 4 23 54 0 0 chr3 25355066 25355103 -202169475 + AT_rich Low_complexity Low_complexity 1 37 0 315 0 0 0 chr3 25355159 25355194 -202169384 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 1062 267 29 3 chr3 25355259 25355574 -202169004 + L1MC/D LINE L1 5454 5776 -2032 251 219 31 47 chr3 25355804 25355868 -202168710 - L2 LINE L2 0 3272 3210 18537 131 21 11 chr3 25355952 25358971 -202165607 + L1MA3 LINE L1 17 3065 -4500 23675 37 42 3 chr3 25358977 25362095 -202162483 + L1P LINE L1 4 3244 -2902 1712 19 14 14 chr3 25362119 25362332 -202162246 + L1PA2 LINE L1 5943 6155 0 619 124 0 8 chr3 25362333 25362454 -202162124 + L1MA3 LINE L1 3053 3172 -4393 * 14935 159 19 10 chr3 25362443 25366719 -202157859 + L1MA3 LINE L1 3411 7724 0 517 245 9 9 chr3 25367308 25367414 -202157164 - L2 LINE L2 0 3313 3208 2589 179 102 21 chr3 25367706 25368202 -202156376 - MLT1F1 LTR MaLR -2 565 24 2241 110 0 10 chr3 25368202 25368503 -202156075 - AluSx SINE Alu -14 298 1 2589 179 102 21 chr3 25368503 25368527 -202156051 - MLT1F1 LTR MaLR -543 24 3 670 242 86 121 chr3 25369331 25369868 -202154710 + LTR67 LTR ERVL 40 557 0 2279 117 53 39 chr3 25370147 25370506 -202154072 + THE1B LTR MaLR 1 364 0 2303 92 10 0 chr3 25370753 25371056 -202153522 - AluY SINE Alu -5 306 1 488 272 38 19 chr3 25371088 25371246 -202153332 + L2 LINE L2 3153 3313 0 306 347 105 0 chr3 25371317 25371484 -202153094 - MIR3 SINE MIR -59 149 3 550 303 23 46 chr3 25372188 25372460 -202152118 + MLT1I LTR MaLR 51 320 -89 404 243 39 10 chr3 25372467 25372570 -202152008 + MLT1I LTR MaLR 442 547 -2 519 281 58 36 chr3 25374225 25374364 -202150214 - MER91A DNA MER1_type -36 160 19 1389 229 134 58 chr3 25374655 25375216 -202149362 + MLT1E LTR MaLR 1 515 -27 1062 257 88 64 chr3 25375325 25375734 -202148844 - MLT1E LTR MaLR -174 419 1 193 328 85 37 chr3 25375801 25375990 -202148588 + L2 LINE L2 2558 2755 -559 2647 136 23 59 chr3 25376019 25376060 -202148518 - MSTB LTR MaLR -1 425 384 2170 132 3 0 chr3 25376060 25376370 -202148208 + AluSx SINE Alu 1 311 -1 2647 136 23 59 chr3 25376370 25376769 -202147809 - MSTB LTR MaLR -42 384 1 235 248 83 74 chr3 25376799 25376920 -202147658 + L2 LINE L2 2858 2979 -293 2220 101 0 31 chr3 25377075 25377392 -202147186 - AluSx SINE Alu -5 307 1 355 246 237 9 chr3 25378127 25378241 -202146337 - MIR SINE MIR -46 216 77 191 256 56 44 chr3 25379173 25379263 -202145315 + L2 LINE L2 2668 2758 -556 768 213 21 53 chr3 25379276 25379464 -202145114 - MER5A DNA MER1_type -6 183 2 1135 314 156 28 chr3 25379497 25381405 -202143173 + L2 LINE L2 833 3054 -218 697 143 0 0 chr3 25381503 25381601 -202142977 + AluJb SINE Alu 196 293 -19 217 269 39 39 chr3 25381628 25381706 -202142872 + L2 LINE L2 3235 3312 -1 767 256 77 16 chr3 25381770 25382016 -202142562 - MIR SINE MIR -1 261 1 860 220 55 22 chr3 25382144 25382326 -202142252 - MER5A DNA MER1_type -1 188 1 493 312 19 39 chr3 25382597 25382802 -202141776 - MIR SINE MIR -50 212 12 1630 183 0 27 chr3 25384935 25385235 -202139343 + AluJo SINE Alu 1 292 -20 2349 118 0 0 chr3 25385294 25385607 -202138971 + AluSq SINE Alu 1 313 0 274 258 80 20 chr3 25385829 25385980 -202138598 + L2 LINE L2 2511 2670 -644 1163 182 104 9 chr3 25386031 25386262 -202138316 + AluJo SINE Alu 1 253 -59 241 295 38 19 chr3 25386263 25386368 -202138210 + L2 LINE L2 2701 2807 -507 227 360 0 0 chr3 25387028 25387117 -202137461 - L2 LINE L2 0 3313 3225 484 302 102 42 chr3 25387252 25387692 -202136886 + L1ME4a LINE L1 4219 4720 -1426 2306 237 43 38 chr3 25387692 25388279 -202136299 - MLT1E LTR MaLR 0 593 4 484 302 102 42 chr3 25388279 25388553 -202136025 + L1ME4a LINE L1 4720 4976 -1170 259 283 111 0 chr3 25388712 25388811 -202135767 - MIR SINE MIR -39 223 114 2627 224 14 36 chr3 25388841 25389421 -202135157 - MLT1F1 LTR MaLR 0 567 1 180 194 28 0 chr3 25389421 25389457 -202135121 - MIR SINE MIR -210 52 16 499 120 10 100 chr3 25389497 25389597 -202134981 + MER7C DNA MER2_type 62 152 -450 * 1603 131 8 0 chr3 25389585 25389822 -202134756 + MER7C DNA MER2_type 374 612 0 447 332 61 32 chr3 25389842 25390222 -202134356 + L1ME4a LINE L1 4967 5363 -783 852 235 0 0 chr3 25390225 25390395 -202134183 + AluJb SINE Alu 138 307 -5 855 267 96 54 chr3 25390427 25390470 -202134108 + L1ME4a LINE L1 5391 5431 -690 1670 151 17 41 chr3 25390470 25390761 -202133817 + AluSx SINE Alu 1 284 -28 213 39 0 0 chr3 25390768 25390794 -202133784 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 855 267 96 54 chr3 25390794 25391387 -202133191 + L1ME4a LINE L1 5436 6062 -59 324 302 38 20 chr3 25392978 25393119 -202131459 + MIR SINE MIR 16 160 -64 245 91 0 23 chr3 25394308 25394352 -202130226 - MADE1 DNA Mariner -37 43 1 263 299 103 38 chr3 25394352 25394536 -202130042 - MLT1J2 LTR MaLR -2 448 253 416 293 0 32 chr3 25395207 25395330 -202129248 + MIR3 SINE MIR 49 167 -41 2111 132 0 0 chr3 25395404 25395693 -202128885 - AluSc SINE Alu -20 289 1 324 335 45 39 chr3 25396313 25396468 -202128110 - L2 LINE L2 -534 2780 2625 926 203 122 27 chr3 25396763 25397058 -202127520 - MER5C DNA MER1_type -1 323 1 196 262 213 21 chr3 25397651 25397792 -202126786 - MIR SINE MIR -2 260 93 2625 163 29 98 chr3 25397980 25398070 -202126508 - L1MD3 LINE L1 0 7995 7900 258 114 23 0 chr3 25398070 25398114 -202126464 + Charlie1 DNA MER1_type 2283 2327 -434 2625 163 29 98 chr3 25398114 25398139 -202126439 - L1MD3 LINE L1 -95 7900 7875 3790 71 2 0 chr3 25398139 25398604 -202125974 - L1PA8 LINE L1 -1 6171 5706 2625 163 29 98 chr3 25398604 25399134 -202125444 - L1MD3 LINE L1 -120 7875 7188 505 202 78 98 chr3 25399366 25399559 -202125019 + MLT1J LTR MaLR 7 195 -316 1501 191 65 46 chr3 25399612 25400025 -202124553 - Charlie4a DNA MER1_type 0 508 88 7240 151 84 12 chr3 25400292 25400679 -202123899 - Charlie1a DNA MER1_type -1310 1451 1093 567 29 0 0 chr3 25400679 25400748 -202123830 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 7240 151 84 12 chr3 25400748 25401713 -202122865 - Charlie1a DNA MER1_type -1668 1093 1 1007 204 21 39 chr3 25401862 25402142 -202122436 + pTR5 LTR ERV1 743 1017 -1421 6688 99 127 102 chr3 25402432 25403821 -202120757 + pTR5 LTR ERV1 1015 2438 0 760 197 27 58 chr3 25404225 25404287 -202120291 - MER5A DNA MER1_type 0 189 127 2357 88 3 3 chr3 25404287 25404592 -202119986 + AluSp SINE Alu 1 305 -8 760 197 27 58 chr3 25404592 25404717 -202119861 - MER5A DNA MER1_type -62 127 8 821 284 32 28 chr3 25405236 25405400 -202119178 + MIR SINE MIR 8 175 -87 1412 159 45 139 chr3 25405400 25405803 -202118775 + MLT1A1 LTR MaLR 1 365 0 821 284 32 28 chr3 25405803 25405888 -202118690 + MIR SINE MIR 175 258 -4 1819 151 36 20 chr3 25406010 25406314 -202118264 - AluSq SINE Alu -4 309 1 2288 136 40 11 chr3 25406903 25407257 -202117321 - THE1B LTR MaLR 0 364 1 226 364 23 11 chr3 25407367 25407455 -202117123 + L2 LINE L2 323 411 -2903 254 382 31 18 chr3 25407494 25407719 -202116859 + L2 LINE L2 2189 2416 -898 1354 192 16 49 chr3 25407719 25407940 -202116638 + MLT1F LTR MaLR 255 429 -76 2438 87 3 0 chr3 25407940 25408239 -202116339 - AluSp SINE Alu -13 300 1 1354 192 16 49 chr3 25408239 25408308 -202116270 + MLT1F LTR MaLR 429 499 -6 184 313 0 0 chr3 25408311 25408359 -202116219 - L2 LINE L2 -69 3244 3197 491 359 90 16 chr3 25408455 25408820 -202115758 + L2 LINE L2 711 1102 -2212 512 269 20 27 chr3 25408909 25409058 -202115520 + LTR16C LTR ERVL 85 232 -259 319 324 55 28 chr3 25409370 25409552 -202115026 + L2 LINE L2 1891 2077 -1237 214 301 65 41 chr3 25409595 25409718 -202114860 + L2 LINE L2 2550 2675 -639 1648 250 72 58 chr3 25410313 25410896 -202113682 - MLT1E LTR MaLR 0 593 3 1460 244 140 32 chr3 25411015 25411507 -202113071 + MLT1H LTR MaLR 1 545 -4 215 53 0 53 chr3 25412271 25412309 -202112269 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 1121 182 36 9 chr3 25412636 25412861 -202111717 - MER96B DNA MER1_type? -3 414 184 2423 89 0 0 chr3 25414078 25414380 -202110198 - AluSq SINE Alu -11 302 1 2452 86 0 0 chr3 25414969 25415271 -202109307 - AluSx SINE Alu -10 302 1 329 296 55 27 chr3 25415303 25415560 -202109018 - L1M4 LINE L1 -3045 3101 2838 2862 163 48 6 chr3 25415566 25416089 -202108489 + L1MB7 LINE L1 5639 6183 -1 302 164 33 0 chr3 25416232 25416293 -202108285 - L1ME3A LINE L1 -17 6153 6091 2582 46 0 3 chr3 25416380 25416686 -202107892 - AluY SINE Alu -6 305 1 257 208 0 0 chr3 25416701 25416749 -202107829 + LTR16A1 LTR ERVL 410 457 0 224 284 25 37 chr3 25417125 25417206 -202107372 + MIR SINE MIR 70 149 -59 632 234 137 37 chr3 25417973 25418323 -202106255 + L1MC4 LINE L1 7658 8042 0 223 162 0 0 chr3 25418407 25418444 -202106134 + L2 LINE L2 3020 3056 -257 287 264 61 91 chr3 25418913 25419020 -202105558 - L2 LINE L2 0 3313 3213 906 225 115 10 chr3 25419020 25419220 -202105358 + MER58A DNA MER1_type 3 223 -1 287 264 61 91 chr3 25419220 25419309 -202105269 - L2 LINE L2 -100 3213 3123 375 345 52 15 chr3 25419498 25419765 -202104813 - L2 LINE L2 -411 2903 2627 1331 263 167 30 chr3 25419771 25420291 -202104287 + MLT2F LTR ERVL 3 612 -51 2101 108 0 4 chr3 25420291 25420590 -202103988 - AluSc SINE Alu 0 298 1 1331 263 167 30 chr3 25420590 25420642 -202103936 + MLT2F LTR ERVL 612 655 -8 246 324 15 0 chr3 25420646 25420714 -202103864 - L2 LINE L2 -687 2627 2559 672 285 40 60 chr3 25420728 25421026 -202103552 + MLT1I LTR MaLR 33 324 -85 229 265 176 10 chr3 25421065 25421167 -202103411 - L2 LINE L2 -742 2572 2454 948 260 150 59 chr3 25422025 25422408 -202102170 + MLT2F LTR ERVL 101 544 -119 2451 76 3 0 chr3 25422408 25422709 -202101869 + AluY SINE Alu 1 302 -9 948 260 150 59 chr3 25422709 25422837 -202101741 + MLT2F LTR ERVL 544 659 -4 4265 169 42 34 chr3 25423792 25423998 -202100580 + L1MB4 LINE L1 5263 5466 -714 198 0 0 0 chr3 25423998 25424020 -202100558 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 4265 169 42 34 chr3 25424020 25424698 -202099880 + L1MB4 LINE L1 5466 6154 -26 23 54 0 0 chr3 25425134 25425171 -202099407 + AT_rich Low_complexity Low_complexity 1 37 0 1171 197 13 69 chr3 25426059 25426363 -202098215 + L1M3e LINE L1 1 287 -6743 2130 260 48 68 chr3 25426369 25427271 -202097307 + L1M3e LINE L1 1133 2018 -5012 1892 176 0 16 chr3 25427271 25427577 -202097001 + AluJb SINE Alu 1 301 -11 2130 260 48 68 chr3 25427577 25427605 -202096973 + L1M3e LINE L1 2018 2045 -4985 216 0 0 0 chr3 25527978 25528002 -201996576 + (A)n Simple_repeat Simple_repeat 1 24 0 287 321 71 48 chr3 25528471 25528576 -201996002 - MIR SINE MIR -56 206 94 2140 125 47 33 chr3 25528576 25528935 -201995643 + THE1B LTR MaLR 1 364 0 287 321 71 48 chr3 25528935 25528997 -201995581 - MIR SINE MIR -168 94 35 467 256 62 47 chr3 25529179 25529390 -201995188 + MIR SINE MIR 47 260 -2 496 264 46 27 chr3 25529467 25529669 -201994909 - MIR SINE MIR -60 202 2 1139 320 187 14 chr3 25531223 25532256 -201992322 + L2 LINE L2 1860 3085 -187 1474 236 94 39 chr3 25532438 25532951 -201991627 + MLT1H LTR MaLR 1 541 -8 201 121 0 0 chr3 25533924 25533957 -201990621 + (CA)n Simple_repeat Simple_repeat 1 33 0 446 302 100 22 chr3 25533966 25534557 -201990021 + L1MC4a LINE L1 5239 5403 -743 195 162 0 0 chr3 25534907 25534944 -201989634 + A-rich Low_complexity Low_complexity 1 37 0 371 263 32 0 chr3 25535768 25535863 -201988715 + L3 LINE CR1 1478 1575 -2 257 75 25 0 chr3 25537023 25537063 -201987515 + (CA)n Simple_repeat Simple_repeat 2 42 0 426 20 0 0 chr3 25537310 25537361 -201987217 + (CA)n Simple_repeat Simple_repeat 1 51 0 379 157 22 11 chr3 25538825 25538914 -201985664 + GA-rich Low_complexity Low_complexity 3 92 0 180 400 27 0 chr3 25540007 25540157 -201984421 + L2 LINE L2 2457 2610 -704 1276 242 76 18 chr3 25540159 25540539 -201984039 - MLT1I LTR MaLR -7 402 1 228 315 71 63 chr3 25540548 25540786 -201983792 + L2 LINE L2 2614 2853 -461 238 308 59 53 chr3 25540865 25541034 -201983544 + L2 LINE L2 2933 3102 -170 2335 144 7 61 chr3 25542017 25542474 -201982104 - MSTB1 LTR MaLR 0 432 1 521 310 66 33 chr3 25543293 25543657 -201980921 + MLT1I LTR MaLR 34 409 0 407 256 111 17 chr3 25544708 25544825 -201979753 - L2 LINE L2 0 3313 3186 201 256 0 0 chr3 25544868 25544911 -201979667 + MIR3 SINE MIR 112 154 -54 343 283 87 0 chr3 25544915 25545053 -201979525 + MER20B DNA MER1_type 6 155 -628 191 279 0 0 chr3 25545118 25545161 -201979417 + MIR3 SINE MIR 155 197 -11 324 178 22 67 chr3 25545727 25545817 -201978761 - MER5A DNA MER1_type -101 88 3 2468 49 7 10 chr3 25546126 25546430 -201978148 + AluY SINE Alu 1 303 -8 1689 73 0 0 chr3 25546756 25546976 -201977602 - L1PA5 LINE L1 0 6154 5935 251 279 33 49 chr3 25547053 25547175 -201977403 + MIR SINE MIR 127 246 -16 2662 218 50 70 chr3 25547661 25548150 -201976428 + L1ME1 LINE L1 4714 5211 -955 1298 123 90 14 chr3 25548150 25548427 -201976151 + L1MA8 LINE L1 5984 6281 -10 2662 218 50 70 chr3 25548427 25548525 -201976053 + L1ME1 LINE L1 5211 5309 -857 189 107 0 0 chr3 25548525 25548553 -201976025 + (TATATG)n Simple_repeat Simple_repeat 2 29 0 2474 24 40 7 chr3 25548559 25548855 -201975723 - AluY SINE Alu -5 306 1 2662 218 50 70 chr3 25548855 25549749 -201974829 + L1ME1 LINE L1 5314 6164 -2 478 307 160 0 chr3 25550264 25550476 -201974102 - MIR SINE MIR 0 262 17 240 35 0 0 chr3 25551783 25551812 -201972766 + (TTG)n Simple_repeat Simple_repeat 2 30 0 453 302 6 11 chr3 25552452 25552631 -201971947 + (TA)n Simple_repeat Simple_repeat 2 179 0 23 33 0 0 chr3 25552830 25552860 -201971718 + AT_rich Low_complexity Low_complexity 1 30 0 234 265 74 0 chr3 25553792 25553869 -201970709 + MIR SINE MIR 40 121 -87 11041 35 1 2 chr3 25554043 25556148 -201968430 - L1PA5 LINE L1 -1 6153 4048 467 318 92 52 chr3 25556381 25556708 -201967870 - MLT1I LTR MaLR -2 407 68 325 280 22 83 chr3 25556772 25557054 -201967524 - L2 LINE L2 -219 3053 2734 25 31 0 0 chr3 25557133 25557165 -201967413 + AT_rich Low_complexity Low_complexity 1 32 0 532 215 110 37 chr3 25557291 25557454 -201967124 + MER5B DNA MER1_type 2 176 -2 1054 154 0 59 chr3 25557658 25557878 -201966700 + MER3 DNA MER1_type 3 209 0 303 226 0 0 chr3 25558118 25558180 -201966398 - Charlie8 DNA MER1_type -1003 1414 1353 314 258 72 0 chr3 25558180 25558277 -201966301 - Charlie8 DNA MER1_type -1928 489 386 256 300 0 0 chr3 25558478 25558538 -201966040 + MIR SINE MIR 89 148 -114 472 217 16 31 chr3 25558856 25558985 -201965593 - MLT1J LTR MaLR 0 511 385 1316 169 4 29 chr3 25559287 25559529 -201965049 - MER46A DNA MER2_type 0 236 1 333 0 0 0 chr3 25560038 25560075 -201964503 + (CA)n Simple_repeat Simple_repeat 1 37 0 369 217 0 0 chr3 25562358 25562427 -201962151 + L2 LINE L2 3185 3253 -19 255 341 124 0 chr3 25562504 25562633 -201961945 - MIR SINE MIR -72 190 46 2343 105 3 0 chr3 25563072 25563377 -201961201 - AluSx SINE Alu -6 306 1 566 152 0 1 chr3 25563460 25563551 -201961027 + MER33 DNA MER1_type 1 82 -88 288 0 0 0 chr3 25564281 25564313 -201960265 + (CA)n Simple_repeat Simple_repeat 2 33 0 373 238 266 0 chr3 25565206 25565349 -201959229 + MER5A DNA MER1_type 9 189 0 22 56 0 0 chr3 25566597 25566633 -201957945 + AT_rich Low_complexity Low_complexity 1 36 0 351 348 30 45 chr3 25566844 25567045 -201957533 + MIR SINE MIR 1 198 -64 444 242 30 0 chr3 25567046 25567145 -201957433 + L1MC4 LINE L1 6832 6933 -1109 1996 161 70 39 chr3 25567157 25567616 -201956962 + MLT1D LTR MaLR 33 505 0 2108 189 47 20 chr3 25568173 25568664 -201955914 + Charlie4a DNA MER1_type 5 508 0 308 278 68 45 chr3 25568691 25568824 -201955754 - L2 LINE L2 0 3313 3178 396 292 4 14 chr3 25568903 25569017 -201955561 + MER5A DNA MER1_type 11 110 -68 255 125 0 0 chr3 25569255 25569295 -201955283 + (A)n Simple_repeat Simple_repeat 1 40 0 609 166 159 6 chr3 25569783 25569940 -201954638 - MER96B DNA MER1_type? -236 181 1 2492 67 0 0 chr3 25570033 25570332 -201954246 - AluY SINE Alu -12 299 1 920 146 146 0 chr3 25571182 25571402 -201953176 + MER33 DNA MER1_type 51 302 -22 291 196 41 0 chr3 25571638 25571735 -201952843 + CT-rich Low_complexity Low_complexity 3 103 0 219 69 0 0 chr3 25572454 25572483 -201952095 + (T)n Simple_repeat Simple_repeat 1 29 0 811 282 58 32 chr3 25572962 25573239 -201951339 + MLT1G LTR MaLR 1 284 -306 316 233 216 23 chr3 25573561 25573737 -201950841 - L1M4 LINE L1 -1538 4608 4399 1644 211 32 22 chr3 25573815 25574185 -201950393 - MLT1A2 LTR MaLR 0 374 1 240 325 96 28 chr3 25574213 25574567 -201950011 - L1M4 LINE L1 -1908 4238 3861 394 327 0 0 chr3 25574593 25574697 -201949881 - L2 LINE L2 0 3313 3210 359 296 0 0 chr3 25574708 25574823 -201949755 - L1M4 LINE L1 -2320 3826 3712 463 264 66 61 chr3 25574902 25575311 -201949267 - L1M4 LINE L1 -1627 4519 4109 28 29 0 0 chr3 25575563 25575598 -201948980 + AT_rich Low_complexity Low_complexity 1 35 0 2165 113 3 7 chr3 25575744 25576054 -201948524 - AluSx SINE Alu -3 309 1 24 53 0 0 chr3 25576714 25576752 -201947826 + AT_rich Low_complexity Low_complexity 1 38 0 306 310 56 69 chr3 25577159 25577462 -201947116 - HAL1b LINE L1 -613 735 437 25 0 0 0 chr3 25579155 25579180 -201945398 + AT_rich Low_complexity Low_complexity 1 25 0 236 320 58 51 chr3 25579288 25579444 -201945134 + L2 LINE L2 2905 3061 -211 474 298 37 27 chr3 25580256 25580444 -201944134 + HsTC2b DNA Tc2 4 193 -722 412 289 112 53 chr3 25580902 25581495 -201943083 - LTR33A LTR ERVL 0 523 1 1149 160 29 19 chr3 25581765 25581971 -201942607 - MER20 DNA MER1_type -1 218 11 254 345 112 8 chr3 25583248 25583408 -201941170 + MIR3 SINE MIR 23 197 -11 1755 53 10 13 chr3 25583808 25584042 -201940536 - L1PA8A LINE L1 -471 5660 5428 1241 95 6 0 chr3 25584042 25584209 -201940369 + L1PA7 LINE L1 5972 6141 -13 1755 53 10 13 chr3 25584209 25584253 -201940325 - L1PA8A LINE L1 -703 5428 5385 2653 112 12 0 chr3 25585579 25585981 -201938597 + L1MA3 LINE L1 5899 6305 0 23 78 0 0 chr3 25586436 25586487 -201938091 + AT_rich Low_complexity Low_complexity 1 51 0 580 274 91 16 chr3 25587007 25587259 -201937319 + HAL1 LINE L1 1457 1727 -780 269 272 157 88 chr3 25587293 25587554 -201937024 + L2 LINE L2 3035 3313 0 2311 97 0 3 chr3 25587880 25588178 -201936400 + AluSx SINE Alu 1 297 -15 4751 218 44 55 chr3 25588379 25588510 -201936068 + L1PA12 LINE L1 2182 2313 -5271 2637 123 3 0 chr3 25588510 25588884 -201935694 + THE1C LTR MaLR 1 375 0 4751 218 44 55 chr3 25588884 25590789 -201933789 + L1PA12 LINE L1 2313 4315 -3269 999 139 6 23 chr3 25590789 25590961 -201933617 - L1PB2 LINE L1 -4 6147 5979 742 205 12 81 chr3 25590989 25591247 -201933331 + L1P LINE L1 5081 5320 -826 3693 85 59 24 chr3 25591250 25591828 -201932750 - L1PB2 LINE L1 -168 5983 5386 5283 138 36 0 chr3 25591828 25593185 -201931393 + L1PA16 LINE L1 4769 6166 0 1305 221 15 8 chr3 25593221 25593918 -201930660 + L1M4c LINE L1 2213 3069 -3313 1698 193 8 11 chr3 25593925 25594288 -201930290 + L1MA5 LINE L1 5939 6300 0 3337 169 43 19 chr3 25594294 25594591 -201929987 + L1MB3 LINE L1 5474 5762 -421 2016 187 120 31 chr3 25594591 25595067 -201929511 - MLT2B1 LTR ERVL -2 518 1 3337 169 43 19 chr3 25595067 25595460 -201929118 + L1MB3 LINE L1 5762 6181 -2 36 62 0 0 chr3 25595773 25595837 -201928741 + AT_rich Low_complexity Low_complexity 1 64 0 365 270 62 46 chr3 25595990 25596249 -201928329 + L1ME4a LINE L1 5615 5877 -244 22 56 0 0 chr3 25596400 25596436 -201928142 + AT_rich Low_complexity Low_complexity 1 36 0 36 23 0 0 chr3 25596517 25596560 -201928018 + AT_rich Low_complexity Low_complexity 1 43 0 24 53 0 0 chr3 25596673 25596711 -201927867 + AT_rich Low_complexity Low_complexity 1 38 0 1378 319 65 31 chr3 25596821 25597408 -201927170 + MLT1L LTR MaLR 9 615 0 894 340 89 10 chr3 25597724 25598115 -201926463 - LTR16A LTR ERVL -21 429 8 21 0 0 0 chr3 25600265 25600286 -201924292 + AT_rich Low_complexity Low_complexity 1 21 0 261 188 14 43 chr3 25600316 25600385 -201924193 + MER4-int LTR ERV1 1111 1177 -5421 270 153 153 0 chr3 25601906 25601965 -201922613 + MIR3 SINE MIR 87 154 -54 1968 137 7 0 chr3 25605704 25605989 -201918589 + AluSx SINE Alu 14 300 -12 653 67 11 0 chr3 25606148 25606237 -201918341 - THE1B LTR MaLR -2 362 273 2243 88 10 0 chr3 25606239 25606547 -201918031 - THE1-int LTR MaLR -1263 317 7 1868 175 103 17 chr3 25606552 25606969 -201917609 - MLT2A2 LTR ERVL 0 453 1 302 312 18 9 chr3 25606983 25607092 -201917486 + L1ME3A LINE L1 919 1028 -5091 28 0 0 0 chr3 25607136 25607164 -201917414 + AT_rich Low_complexity Low_complexity 1 28 0 1922 152 10 75 chr3 25607218 25607632 -201916946 + L1MA7 LINE L1 5900 6286 -5 1398 223 59 20 chr3 25608033 25608437 -201916141 + LTR52 LTR ERVL 1 420 -1 544 275 58 5 chr3 25609147 25609336 -201915242 + MIR SINE MIR 17 215 -47 207 0 0 0 chr3 25609724 25609747 -201914831 + (TTG)n Simple_repeat Simple_repeat 2 24 0 345 100 0 0 chr3 25610357 25610407 -201914171 + (TG)n Simple_repeat Simple_repeat 2 51 0 412 265 111 49 chr3 25611086 25611411 -201913167 + L1MEd LINE L1 561 905 -5214 21 0 0 0 chr3 25611416 25611437 -201913141 + AT_rich Low_complexity Low_complexity 1 21 0 2128 134 0 7 chr3 25611438 25611744 -201912834 + AluSq SINE Alu 1 304 -9 451 282 87 48 chr3 25611951 25612326 -201912252 + L1MEd LINE L1 1185 1630 -860 1419 214 72 38 chr3 25612330 25612774 -201911804 - L1ME2 LINE L1 -34 6130 5672 1698 165 84 0 chr3 25612989 25613322 -201911256 + MER46B DNA MER2_type 1 236 0 588 303 81 5 chr3 25613336 25613768 -201910810 + L1ME3A LINE L1 2852 3316 -2813 25 65 0 0 chr3 25613768 25613814 -201910764 + AT_rich Low_complexity Low_complexity 1 46 0 1025 192 126 19 chr3 25614317 25614578 -201910000 - AluJb SINE Alu -17 295 7 398 262 158 87 chr3 25615287 25615585 -201908993 + MLT1I LTR MaLR 65 383 -26 233 271 109 67 chr3 25615596 25615684 -201908894 + L1ME3A LINE L1 3600 3683 -2446 2372 110 8 8 chr3 25615684 25616039 -201908539 + THE1A LTR MaLR 1 355 0 10888 102 35 0 chr3 25616039 25617565 -201907013 + THE1A-int LTR MaLR 1 1580 0 2308 132 6 8 chr3 25617565 25617921 -201906657 + THE1A LTR MaLR 1 355 0 233 271 109 67 chr3 25617921 25618040 -201906538 + L1ME3A LINE L1 3682 3818 -2311 2475 65 0 0 chr3 25618404 25618713 -201905865 - AluY SINE Alu -2 309 1 820 239 93 8 chr3 25620689 25620925 -201903653 - MIR SINE MIR -11 251 2 725 271 105 72 chr3 25623376 25624743 -201899835 + L1ME3A LINE L1 3846 5256 -873 1120 302 74 38 chr3 25624829 25625492 -201899086 + L1ME3A LINE L1 5364 6050 -103 31 26 0 0 chr3 25625502 25625540 -201899038 + AT_rich Low_complexity Low_complexity 1 38 0 2490 70 0 0 chr3 25626062 25626363 -201898215 - AluY SINE Alu -10 301 1 283 275 0 14 chr3 25626577 25626646 -201897932 - MLT1K LTR MaLR -341 247 180 597 262 87 58 chr3 25626700 25626875 -201897703 + L2 LINE L2 2996 3185 -128 1426 183 55 124 chr3 25626875 25627416 -201897162 + MLT1D LTR MaLR 1 504 -1 597 262 87 58 chr3 25627416 25627549 -201897029 + L2 LINE L2 3185 3313 0 196 179 0 36 chr3 25628689 25628745 -201895833 + (TATG)n Simple_repeat Simple_repeat 3 56 0 793 204 39 29 chr3 25629307 25629513 -201895065 + MER3 DNA MER1_type 2 209 0 627 239 66 15 chr3 25630533 25630730 -201893848 - LTR16C LTR ERVL -12 479 273 1500 158 53 0 chr3 25631073 25631320 -201893258 + AluSx SINE Alu 35 294 -18 808 271 151 42 chr3 25632850 25633253 -201891325 - LTR33 LTR ERVL 0 521 75 329 197 56 92 chr3 25633292 25633434 -201891144 + L1ME LINE L1 5689 5825 -296 2409 74 0 0 chr3 25634242 25634541 -201890037 + AluSg SINE Alu 1 299 -11 349 262 56 37 chr3 25635727 25635834 -201888744 - MIR3 SINE MIR -85 123 15 1717 248 28 38 chr3 25637237 25637733 -201886845 + LTR16C LTR ERVL 1 491 0 545 317 134 18 chr3 25637735 25637959 -201886619 + MIR SINE MIR 10 259 -3 836 242 173 57 chr3 25637959 25638451 -201886127 - MLT1H1 LTR MaLR 0 555 7 330 87 0 0 chr3 25638455 25638501 -201886077 + (TTA)n Simple_repeat Simple_repeat 2 47 0 231 378 60 32 chr3 25638647 25638896 -201885682 + L2 LINE L2 2529 2784 -530 641 299 58 53 chr3 25639969 25640332 -201884246 + L1MEc LINE L1 382 696 -5509 207 0 0 0 chr3 25640332 25640355 -201884223 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 641 299 58 53 chr3 25640355 25640656 -201883922 + L1MEc LINE L1 696 994 -5211 275 311 59 0 chr3 25640703 25640822 -201883756 + HAL1 LINE L1 1527 1652 -855 220 220 0 0 chr3 25640991 25641041 -201883537 + (TAA)n Simple_repeat Simple_repeat 1 50 0 27 49 0 0 chr3 25641265 25641306 -201883272 + AT_rich Low_complexity Low_complexity 1 41 0 415 149 11 35 chr3 25641496 25641583 -201882995 + MLT2B3 LTR ERVL 1 85 -469 2364 184 36 21 chr3 25641665 25642138 -201882440 + MLT2B3 LTR ERVL 75 554 0 216 246 87 0 chr3 25642442 25642511 -201882067 - MIR SINE MIR -147 115 41 290 228 206 0 chr3 25642683 25642775 -201881803 - MIR SINE MIR -44 218 108 215 309 15 0 chr3 25642960 25643028 -201881550 + L2 LINE L2 3241 3309 -4 784 261 5 0 chr3 25643378 25643562 -201881016 - MIR SINE MIR -67 195 11 353 304 21 62 chr3 25643681 25643875 -201880703 + MLT1H LTR MaLR 75 260 -289 791 198 8 15 chr3 25645299 25645471 -201879107 + MER5B DNA MER1_type 8 189 0 2452 84 0 0 chr3 25646708 25647017 -201877561 - AluY SINE Alu -2 309 1 242 125 0 0 chr3 25647373 25647413 -201877165 - 5S rRNA rRNA -81 40 1 878 216 0 21 chr3 25649332 25649522 -201875056 - MER5A DNA MER1_type -3 186 1 1074 232 18 0 chr3 25649894 25650114 -201874464 - MER58A DNA MER1_type 0 224 1 465 206 84 19 chr3 25650522 25650629 -201873949 - MER33 DNA MER1_type -210 114 1 733 163 121 25 chr3 25651692 25651932 -201872646 - MER33 DNA MER1_type -34 290 28 383 248 77 0 chr3 25653023 25653140 -201871438 + L3 LINE CR1 1303 1428 -149 266 231 55 0 chr3 25653386 25653477 -201871101 + MLT1E2 LTR MaLR 521 616 -10 329 172 0 0 chr3 25653564 25653622 -201870956 + HAL1 LINE L1 972 1029 -1478 1063 194 74 0 chr3 25653638 25653854 -201870724 - MIR SINE MIR -5 257 26 2692 263 111 26 chr3 25653863 25655161 -201869417 + HAL1 LINE L1 1064 2471 -36 1842 162 3 40 chr3 25655520 25655866 -201868712 + MLT1A1 LTR MaLR 1 333 -32 469 251 184 0 chr3 25655880 25656043 -201868535 - L2 LINE L2 -1113 2201 2009 266 59 0 0 chr3 25656263 25656297 -201868281 + MLT1A1 LTR MaLR 332 365 0 320 277 129 0 chr3 25656400 25656501 -201868077 - L2 LINE L2 -22 3250 3137 1203 250 39 10 chr3 25656506 25656814 -201867764 - L2 LINE L2 -780 2534 2218 415 286 156 5 chr3 25657246 25657445 -201867133 - L2 LINE L2 -1075 2239 2011 414 254 67 34 chr3 25657697 25657906 -201866672 - L1ME4a LINE L1 -217 5904 5689 24 0 0 0 chr3 25658295 25658319 -201866259 + AT_rich Low_complexity Low_complexity 1 24 0 1126 274 30 28 chr3 25659214 25659641 -201864937 - LTR16A LTR ERVL -6 444 17 1970 150 37 6 chr3 25659781 25660108 -201864470 - MER1B DNA MER1_type 0 337 1 409 234 88 29 chr3 25660612 25660749 -201863829 + LTR16C LTR ERVL 344 488 -3 436 73 64 18 chr3 25660960 25661069 -201863509 + (TAGA)n Simple_repeat Simple_repeat 4 117 0 922 276 155 35 chr3 25661343 25661879 -201862699 + L2 LINE L2 2725 3313 0 1298 147 53 9 chr3 25664355 25664580 -201859998 - MER46A DNA MER2_type -1 235 1 342 0 0 0 chr3 25664904 25664942 -201859636 + (CA)n Simple_repeat Simple_repeat 1 38 0 234 0 0 0 chr3 25664941 25664967 -201859611 + (TA)n Simple_repeat Simple_repeat 2 27 0 * 2177 112 0 23 chr3 25664967 25665270 -201859308 - AluSx SINE Alu -16 296 1 323 289 88 90 chr3 25665532 25665875 -201858703 - MLT1I LTR MaLR 0 409 68 2276 121 30 33 chr3 25665916 25666281 -201858297 + THE1B LTR MaLR 1 364 0 761 130 294 0 chr3 25667074 25667220 -201857358 - MER5A DNA MER1_type 0 189 1 574 188 0 30 chr3 25667228 25667361 -201857217 - Charlie8 DNA MER1_type -2238 179 51 204 67 0 0 chr3 25667435 25667465 -201857113 + (CA)n Simple_repeat Simple_repeat 2 31 0 824 252 95 13 chr3 25669760 25669955 -201854623 + L1MC4a LINE L1 5574 5804 -2004 979 49 0 0 chr3 25669955 25670078 -201854500 + L1PA4 LINE L1 6031 6153 -2 824 252 95 13 chr3 25670078 25670188 -201854390 + L1MC4a LINE L1 5804 5904 -1904 53 49 0 0 chr3 25670188 25670269 -201854309 + AT_rich Low_complexity Low_complexity 1 81 0 388 333 29 18 chr3 25670276 25670447 -201854131 + MER5A DNA MER1_type 11 183 -6 2290 71 0 0 chr3 25670813 25671142 -201853436 - AluSg SINE Alu 0 329 1 236 229 107 49 chr3 25671767 25671889 -201852689 - LTR16C LTR ERVL -2 489 361 2420 86 0 0 chr3 25672394 25672697 -201851881 + AluY SINE Alu 2 304 -7 342 247 0 11 chr3 25672790 25672883 -201851695 - MLT1H LTR MaLR -2 547 456 458 259 85 57 chr3 25672971 25673253 -201851325 - MLT1H LTR MaLR -259 290 1 22 0 0 0 chr3 25673974 25673996 -201850582 + AT_rich Low_complexity Low_complexity 1 22 0 411 337 29 17 chr3 25674192 25674367 -201850211 + MER5A DNA MER1_type 7 183 -6 2405 90 0 3 chr3 25674725 25675036 -201849542 - AluSg SINE Alu 0 310 1 213 286 174 31 chr3 25675162 25675260 -201849318 + MER5B DNA MER1_type 61 172 -6 387 298 42 18 chr3 25676180 25676348 -201848230 - MLT1L LTR MaLR -351 264 93 233 274 142 18 chr3 25676422 25676535 -201848043 + MIR SINE MIR 136 262 0 1520 166 48 48 chr3 25676990 25677285 -201847293 + AluJb SINE Alu 1 295 -17 183 417 38 8 chr3 25677648 25677780 -201846798 + MIR3 SINE MIR 10 145 -63 372 308 17 8 chr3 25677827 25677944 -201846634 + MER5B DNA MER1_type 1 118 -60 512 212 42 48 chr3 25679304 25679469 -201845109 - MER103 DNA DNA -1 165 2 561 239 89 82 chr3 25680766 25681239 -201843339 - MLT1K LTR MaLR 0 476 1 202 237 0 17 chr3 25681480 25681539 -201843039 - L2 LINE L2 -226 3046 2989 389 214 195 88 chr3 25681579 25681887 -201842691 + MLT1J2 LTR MaLR 69 409 -41 1431 175 15 118 chr3 25682008 25682414 -201842164 - MLT1A1 LTR MaLR 0 365 2 503 272 123 53 chr3 25682617 25682860 -201841718 - MLT1H LTR MaLR -195 354 95 402 323 65 58 chr3 25683881 25684293 -201840285 + HAL1 LINE L1 352 766 -1741 1780 191 11 121 chr3 25684318 25684728 -201839850 + MLT1D LTR MaLR 1 334 -171 2418 51 6 22 chr3 25684728 25685040 -201839538 + AluY SINE Alu 5 311 0 1780 191 11 121 chr3 25685040 25685193 -201839385 + MLT1D LTR MaLR 334 502 -3 261 57 0 0 chr3 25685193 25685228 -201839350 + (CA)n Simple_repeat Simple_repeat 2 36 0 660 281 99 72 chr3 25685637 25686193 -201838385 - MLT1L LTR MaLR -6 609 39 242 305 78 31 chr3 25887007 25887135 -201637443 - L2 LINE L2 0 3272 3139 240 306 0 0 chr3 25887983 25888045 -201636533 + (TG)n Simple_repeat Simple_repeat 1 62 0 22 35 0 0 chr3 25890486 25890515 -201634063 + AT_rich Low_complexity Low_complexity 1 29 0 1150 197 178 24 chr3 25891384 25891755 -201632823 - MSTA LTR MaLR 0 428 1 703 268 61 7 chr3 25892424 25892704 -201631874 + L1M4 LINE L1 4871 5165 -981 636 205 0 0 chr3 25892705 25892817 -201631761 + FLAM_A SINE Alu 6 117 -25 326 156 10 15 chr3 25892949 25893031 -201631547 - Alu SINE Alu -2 300 242 2204 94 0 3 chr3 25893105 25893428 -201631150 + AluSg SINE Alu 1 322 0 2351 169 28 102 chr3 25893437 25893607 -201630971 + L1MD3 LINE L1 7421 7602 -393 1008 77 0 7 chr3 25893607 25893750 -201630828 + L1PA4 LINE L1 6012 6153 -2 2351 169 28 102 chr3 25893750 25893799 -201630779 + L1MD3 LINE L1 7602 7653 -342 189 0 0 0 chr3 25893799 25893820 -201630758 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 2351 169 28 102 chr3 25893820 25894209 -201630369 + L1MD3 LINE L1 7653 7985 -10 236 193 277 12 chr3 25894430 25894513 -201630065 + L1MEd LINE L1 46 150 -5969 455 345 131 25 chr3 25894563 25895012 -201629566 + L1MEd LINE L1 244 740 -5379 296 299 78 42 chr3 25897348 25897515 -201627063 + MIR SINE MIR 39 211 -51 229 259 12 86 chr3 25897552 25897633 -201626945 + L2 LINE L2 3239 3313 0 21 57 0 0 chr3 25898495 25898530 -201626048 + AT_rich Low_complexity Low_complexity 1 35 0 993 96 0 0 chr3 25898946 25899071 -201625507 - AluSc SINE Alu -19 290 166 22 35 0 0 chr3 25899909 25899938 -201624640 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 25900585 25900608 -201623970 + AT_rich Low_complexity Low_complexity 1 23 0 192 40 0 0 chr3 25904083 25904108 -201620470 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 202 68 68 68 chr3 25906640 25906684 -201617894 + (TATATG)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr3 25906984 25907005 -201617573 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr3 25908936 25908970 -201615608 + AT_rich Low_complexity Low_complexity 1 34 0 204 259 0 35 chr3 25909435 25909493 -201615085 - L2 LINE L2 -2 3311 3256 28 29 0 0 chr3 25910863 25910898 -201613680 + AT_rich Low_complexity Low_complexity 1 35 0 1851 196 8 30 chr3 25918720 25919093 -201605485 + MLT1A1 LTR MaLR 1 365 0 2702 143 7 2 chr3 25921713 25922138 -201602440 - MSTC LTR MaLR 0 428 2 399 335 40 46 chr3 25922866 25923018 -201601560 + L2 LINE L2 3077 3227 -45 709 165 98 37 chr3 25923148 25923312 -201601266 - MER3 DNA MER1_type -81 128 2 521 244 16 8 chr3 25924621 25924744 -201599834 + MER5B DNA MER1_type 53 176 -2 631 194 21 7 chr3 25925771 25925915 -201598663 + L1MB4 LINE L1 6032 6177 -3 22 56 0 0 chr3 25926483 25926519 -201598059 + AT_rich Low_complexity Low_complexity 1 36 0 4539 76 26 9 chr3 25927589 25928697 -201595881 - MER11A LTR ERVK 0 1266 1 739 368 48 25 chr3 25929036 25929430 -201595148 - L2 LINE L2 -1 3271 2869 254 254 8 142 chr3 25929506 25929640 -201594938 - MER102a DNA MER1_type 0 330 215 1761 171 34 3 chr3 25929846 25930174 -201594404 - MER44D DNA MER2_type -1 608 1 496 305 0 8 chr3 25930700 25930828 -201593750 + MIR SINE MIR 30 156 -106 249 288 61 0 chr3 25931524 25931590 -201592988 + MIR SINE MIR 81 150 -58 253 326 11 11 chr3 25931599 25931688 -201592890 - MER5A DNA MER1_type -8 181 93 225 280 0 0 chr3 25931849 25931899 -201592679 - MLT1K LTR MaLR -111 477 428 618 341 39 33 chr3 25931994 25932299 -201592279 - MLT1K LTR MaLR -253 335 29 1821 126 169 21 chr3 25932539 25932912 -201591666 - MSTA LTR MaLR 0 428 1 703 268 61 7 chr3 25933581 25933861 -201590717 + L1M4 LINE L1 4871 5165 -981 636 205 0 0 chr3 25933862 25933974 -201590604 + FLAM_A SINE Alu 6 117 -25 813 100 0 0 chr3 25934203 25934313 -201590265 + AluSg/x SINE Alu 197 306 -4 272 244 13 13 chr3 25934501 25934579 -201589999 - MLT1K LTR MaLR -323 265 188 27 0 0 0 chr3 25934938 25934965 -201589613 + AT_rich Low_complexity Low_complexity 1 27 0 1965 132 94 29 chr3 25935361 25935703 -201588875 - THE1B LTR MaLR 0 364 1 21 82 0 0 chr3 25937000 25937049 -201587529 + AT_rich Low_complexity Low_complexity 1 49 0 349 347 56 20 chr3 25937557 25937753 -201586825 + HAL1b LINE L1 505 707 -641 24 53 0 0 chr3 25938640 25938678 -201585900 + AT_rich Low_complexity Low_complexity 1 38 0 29 47 0 0 chr3 25938730 25938773 -201585805 + AT_rich Low_complexity Low_complexity 1 43 0 337 278 141 56 chr3 25939231 25939501 -201585077 + L1ME LINE L1 4633 4925 -1221 360 249 112 13 chr3 25940165 25940466 -201584112 + L1MCc LINE L1 1281 1848 -5068 332 325 57 28 chr3 25940513 25940725 -201583853 + L1ME LINE L1 5508 5725 -396 791 252 59 14 chr3 25940727 25940949 -201583629 - MIR SINE MIR -28 234 3 533 213 126 44 chr3 25941230 25941413 -201583165 + MIR SINE MIR 3 200 -62 267 286 98 11 chr3 25942976 25943162 -201581416 + MIR SINE MIR 55 255 -7 191 382 114 30 chr3 25943309 25943571 -201581007 - L2 LINE L2 -20 3252 2969 1259 169 40 9 chr3 25943595 25943820 -201580758 - MER8 DNA MER2_type 0 239 8 184 340 0 0 chr3 25943887 25943940 -201580638 + MIR SINE MIR 89 141 -67 605 204 178 6 chr3 25944312 25944469 -201580109 + MER5A DNA MER1_type 3 186 -3 351 277 129 0 chr3 25945196 25945297 -201579281 + MER81 DNA DNA 1 114 0 650 211 177 0 chr3 25945379 25945526 -201579052 + MER5A DNA MER1_type 7 179 -10 2268 98 20 0 chr3 25945917 25946223 -201578355 + AluSp SINE Alu 2 313 0 917 168 37 42 chr3 25946502 25946692 -201577886 - MER5A DNA MER1_type 0 189 1 457 239 68 8 chr3 25946933 25947050 -201577528 - MER5C DNA MER1_type -200 124 1 1829 157 83 52 chr3 25947575 25947996 -201576582 - MER63B DNA MER1_type 0 436 3 969 264 84 6 chr3 25948272 25948696 -201575882 + L1MC3 LINE L1 6233 6359 0 385 245 180 7 chr3 25949147 25949286 -201575292 - MER5A DNA MER1_type 0 189 27 21 82 0 0 chr3 25950699 25950748 -201573830 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr3 25950978 25951007 -201573571 + AT_rich Low_complexity Low_complexity 1 29 0 241 290 83 21 chr3 25951761 25951906 -201572672 + L1ME LINE L1 5766 5919 -202 197 355 48 83 chr3 25952497 25952810 -201571768 - L2 LINE L2 -13 3259 2958 218 296 95 35 chr3 25953021 25953190 -201571388 + L2 LINE L2 2007 2185 -1129 3280 209 58 71 chr3 25953235 25953676 -201570902 + L1MC4a LINE L1 6730 7176 -632 2153 101 0 3 chr3 25953676 25953963 -201570615 + AluSg SINE Alu 1 286 -24 3280 209 58 71 chr3 25953963 25954178 -201570400 + L1MC4a LINE L1 7176 7392 -416 1008 77 0 7 chr3 25954178 25954321 -201570257 + L1PA4 LINE L1 6012 6153 -2 3280 209 58 71 chr3 25954321 25954370 -201570208 + L1MC4a LINE L1 7392 7440 -368 189 0 0 0 chr3 25954370 25954391 -201570187 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 3280 209 58 71 chr3 25954391 25954777 -201569801 + L1MC4a LINE L1 7440 7808 0 241 193 277 12 chr3 25955001 25955084 -201569494 + L1MEd LINE L1 46 150 -5969 1062 306 123 22 chr3 25955134 25955978 -201568600 + L1MEd LINE L1 244 1172 -4947 347 300 0 0 chr3 25956054 25956144 -201568434 - L1MC4 LINE L1 -1339 6703 6614 312 219 73 0 chr3 25956149 25956231 -201568347 - L1MC4 LINE L1 -1340 6702 6615 * 316 259 47 0 chr3 25956203 25956288 -201568290 - L1MC4 LINE L1 -1340 6702 6614 370 223 0 43 chr3 25956308 25956402 -201568176 - L1MC4 LINE L1 -1339 6703 6614 1427 109 45 5 chr3 25957075 25957295 -201567283 - MER30 DNA MER1_type 0 230 2 1278 216 41 44 chr3 25957304 25957646 -201566932 + MER58B DNA MER1_type 1 341 0 24 0 0 0 chr3 25959096 25959120 -201565458 + AT_rich Low_complexity Low_complexity 1 24 0 603 306 19 19 chr3 25959417 25959682 -201564896 + L1ME4a LINE L1 5491 5755 -366 252 244 244 10 chr3 25959690 25959883 -201564695 + L1ME4a LINE L1 5803 6040 -81 363 44 0 0 chr3 25960009 25960054 -201564524 + (CA)n Simple_repeat Simple_repeat 2 46 0 256 270 40 30 chr3 25960072 25960172 -201564406 - L1MC4 LINE L1 -1927 5881 5781 363 298 263 29 chr3 25960277 25960733 -201563845 + L2 LINE L2 966 1528 -1786 352 307 12 102 chr3 25960733 25961143 -201563435 - L1M4 LINE L1 -2392 3754 3382 810 232 40 13 chr3 25961914 25961960 -201562618 - Charlie4 DNA MER1_type -1718 243 200 2320 147 0 3 chr3 25961960 25962327 -201562251 + MER47A DNA MER2_type 1 366 0 810 232 40 13 chr3 25962327 25962504 -201562074 - Charlie4 DNA MER1_type -1761 200 14 454 313 27 46 chr3 25962703 25962747 -201561831 - HAL1 LINE L1 -741 1766 1723 291 54 0 0 chr3 25962747 25962784 -201561794 + (TA)n Simple_repeat Simple_repeat 2 38 0 454 313 27 46 chr3 25962784 25963110 -201561468 - HAL1 LINE L1 -784 1723 1403 421 302 64 53 chr3 25963124 25963389 -201561189 - L1MEd LINE L1 -4864 1255 988 1115 191 0 43 chr3 25963913 25964143 -201560435 - AluJo SINE Alu -92 220 1 22 0 0 0 chr3 25964162 25964184 -201560394 + AT_rich Low_complexity Low_complexity 1 22 0 486 311 12 81 chr3 25965504 25965826 -201558752 - L2 LINE L2 -19 3294 2995 474 65 0 0 chr3 25966095 25966157 -201558421 + (TA)n Simple_repeat Simple_repeat 1 62 0 287 309 44 22 chr3 25967639 25967775 -201556803 - L2 LINE L2 -219 3053 2915 463 316 35 12 chr3 25968450 25968621 -201555957 + MER5A DNA MER1_type 15 189 0 1686 275 104 34 chr3 25969474 25969929 -201554649 - MLT2E LTR ERVL -4 624 120 2054 100 35 7 chr3 25969929 25970218 -201554360 - AluSx SINE Alu -15 297 1 1686 275 104 34 chr3 25970218 25970329 -201554249 - MLT2E LTR ERVL -508 120 18 905 258 84 70 chr3 25970718 25971201 -201553377 - MLT1H LTR MaLR -15 534 5 878 203 55 51 chr3 25971321 25971538 -201553040 + MER20 DNA MER1_type 2 219 0 338 246 127 52 chr3 25973759 25973893 -201550685 + MIR SINE MIR 119 262 0 219 88 0 0 chr3 25976691 25976725 -201547853 + (CA)n Simple_repeat Simple_repeat 1 34 0 438 229 95 78 chr3 25978093 25978440 -201546138 - L1M LINE L1 -751 5413 5042 2339 222 54 2 chr3 25978451 25979009 -201545569 + L1ME2 LINE L1 5395 5981 -183 1876 184 14 23 chr3 25979009 25979357 -201545221 + MLT1A1 LTR MaLR 3 347 -18 491 291 24 0 chr3 25979379 25979544 -201545034 + L1ME2 LINE L1 5994 6162 -2 338 308 174 5 chr3 25979590 25979785 -201544793 + MIR SINE MIR 3 230 -32 313 261 73 37 chr3 25980059 25980255 -201544323 + MER63 DNA MER1_type 5 1687 -1 347 258 108 97 chr3 25980888 25981105 -201543473 + L1ME4a LINE L1 5628 5841 -280 2057 115 0 0 chr3 25981105 25981391 -201543187 - AluY SINE Alu -25 286 1 347 258 108 97 chr3 25981391 25981627 -201542951 + L1ME4a LINE L1 5841 6086 -35 447 266 24 48 chr3 25981999 25982206 -201542372 - L1MC4 LINE L1 -1 8041 7840 2114 240 59 38 chr3 25982266 25982957 -201541621 - L1ME2 LINE L1 -12 6152 5447 248 263 0 0 chr3 25983454 25983511 -201541067 + L2 LINE L2 3255 3311 -2 784 227 129 5 chr3 25983514 25983708 -201540870 + MIR SINE MIR 13 230 -32 2856 264 94 30 chr3 25986419 25986599 -201537979 - L2 LINE L2 -2 3311 3144 1796 168 0 0 chr3 25986599 25986890 -201537688 + AluSx SINE Alu 12 302 -10 2856 264 94 30 chr3 25986890 25987883 -201536695 - L2 LINE L2 -169 3144 2032 2193 112 0 3 chr3 25987883 25988187 -201536391 + AluSg SINE Alu 1 303 -7 2856 264 94 30 chr3 25988187 25988385 -201536193 - L2 LINE L2 -1281 2032 1848 436 254 131 89 chr3 25990174 25990532 -201534046 - LTR16A1 LTR ERVL 0 457 85 287 318 154 37 chr3 25990628 25990842 -201533736 - MIR SINE MIR -10 252 14 561 280 54 64 chr3 25990908 25991222 -201533356 + L3b LINE CR1 1103 1413 -170 313 36 36 36 chr3 25991244 25991299 -201533279 + (GAAAA)n Simple_repeat Simple_repeat 3 57 0 345 207 0 0 chr3 25991812 25991894 -201532684 + (TA)n Simple_repeat Simple_repeat 1 82 0 581 313 45 40 chr3 25992418 25992607 -201531971 - MIR SINE MIR -9 253 61 1568 207 102 8 chr3 25992607 25992969 -201531609 + MSTD LTR MaLR 1 396 0 581 313 45 40 chr3 25992969 25993003 -201531575 - MIR SINE MIR -201 61 29 350 275 79 119 chr3 25993135 25993640 -201530938 + MLT1K LTR MaLR 104 588 0 33529 39 31 2 chr3 25994162 25998326 -201526252 + L1P LINE L1 1 4286 -1860 10167 85 8 21 chr3 25998326 25999725 -201524853 + HERVL-A1 LTR ERVL 4274 5654 0 2999 80 52 5 chr3 25999725 26000149 -201524429 + MLT2A1 LTR ERVL 1 444 0 7159 220 60 28 chr3 26000149 26001313 -201523265 - L1ME LINE L1 -445 5790 4665 1854 167 20 3 chr3 26001313 26001667 -201522911 + MER46B DNA MER2_type 2 236 0 7159 220 60 28 chr3 26001667 26002945 -201521633 - L1ME LINE L1 -1570 4665 3278 5011 251 67 11 chr3 26002963 26004518 -201520060 - L1ME LINE L1 -4718 1678 37 404 235 0 0 chr3 26006664 26006745 -201517833 - MIR3 SINE MIR -46 162 82 1143 256 83 42 chr3 26007477 26007949 -201516629 - LTR16C LTR ERVL 0 491 1 594 269 120 42 chr3 26007973 26008307 -201516271 - MLT1I LTR MaLR -11 398 39 524 342 74 25 chr3 26008702 26008963 -201515615 + L1MC4a LINE L1 5413 5660 -2148 2542 133 24 7 chr3 26008963 26009383 -201515195 + MSTA LTR MaLR 1 427 -1 524 342 74 25 chr3 26009383 26009609 -201514969 + L1MC4a LINE L1 5660 5924 -1884 299 239 114 94 chr3 26009821 26010022 -201514556 + MLT1K LTR MaLR 136 340 -248 255 61 0 0 chr3 26010123 26010156 -201514422 + (CAAA)n Simple_repeat Simple_repeat 3 35 0 330 314 127 31 chr3 26010322 26010551 -201514027 + L1MC4a LINE L1 5751 6001 -1807 622 300 67 73 chr3 26010986 26011343 -201513235 - MLT1I LTR MaLR -1 408 54 21 0 0 0 chr3 26011746 26011767 -201512811 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 26011878 26011901 -201512677 + AT_rich Low_complexity Low_complexity 1 23 0 756 102 0 183 chr3 26012204 26012401 -201512177 - MER82 DNA MER2_type -304 349 189 26 30 0 0 chr3 26012459 26012492 -201512086 + AT_rich Low_complexity Low_complexity 1 33 0 307 227 13 60 chr3 26012553 26012703 -201511875 + L1ME4a LINE L1 5976 6118 -3 2178 97 4 0 chr3 26013082 26013431 -201511147 + AluSg SINE Alu 3 352 0 822 113 0 0 chr3 26013441 26013547 -201511031 + AluSg/x SINE Alu 187 292 -20 269 26 26 0 chr3 26014092 26014130 -201510448 + (CA)n Simple_repeat Simple_repeat 2 40 0 2942 161 40 72 chr3 26014134 26014786 -201509792 - MER82 DNA MER2_type 0 653 23 24 67 0 0 chr3 26014789 26014834 -201509744 + AT_rich Low_complexity Low_complexity 1 45 0 2488 79 0 0 chr3 26015045 26015348 -201509230 + AluY SINE Alu 1 303 -8 1852 149 3 0 chr3 26015424 26015706 -201508872 - AluSx SINE Alu -7 305 23 836 252 5 5 chr3 26016470 26016676 -201507902 + L1ME1 LINE L1 5457 5662 -504 1155 246 30 18 chr3 26018813 26019143 -201505435 + L1ME1 LINE L1 5674 6007 -159 234 65 0 0 chr3 26019161 26019192 -201505386 + MER3 DNA MER1_type 19 49 -160 375 245 13 0 chr3 26019197 26019307 -201505271 + L1ME1 LINE L1 6064 6183 -1 322 217 120 22 chr3 26019632 26019724 -201504854 + L2 LINE L2 3208 3308 -5 1023 276 110 18 chr3 26019998 26020566 -201504012 - L2 LINE L2 -4 3309 2687 345 140 0 0 chr3 26020566 26020616 -201503962 + Alu SINE Alu 1 50 -250 428 233 0 0 chr3 26020616 26020702 -201503876 - AluJ/FLAM SINE Alu -226 86 1 213 344 110 40 chr3 26020785 26021012 -201503566 - L2 LINE L2 -1063 2251 2009 * 870 313 69 30 chr3 26020991 26021490 -201503088 + L2 LINE L2 2791 3306 -7 21 0 0 0 chr3 26022700 26022721 -201501857 + AT_rich Low_complexity Low_complexity 1 21 0 240 306 0 0 chr3 26023463 26023525 -201501053 + (CA)n Simple_repeat Simple_repeat 1 62 0 250 320 70 23 chr3 26024374 26024502 -201500076 + L2 LINE L2 3139 3272 0 507 340 46 46 chr3 26024894 26025153 -201499425 - MLT1K LTR MaLR -325 263 5 488 311 37 37 chr3 26025493 26025657 -201498921 - MER5B DNA MER1_type -14 164 1 1422 208 5 5 chr3 26027161 26027643 -201496935 - L1ME LINE L1 -627 5537 5056 1844 191 41 109 chr3 26027656 26027794 -201496784 + L1ME2 LINE L1 5554 5700 -464 1171 130 19 24 chr3 26027794 26028001 -201496577 + L1PB1 LINE L1 5943 6148 -3 1844 191 41 109 chr3 26028001 26028495 -201496083 + L1ME2 LINE L1 5700 6143 -21 34 84 0 0 chr3 26028637 26028720 -201495858 + AT_rich Low_complexity Low_complexity 1 83 0 318 244 75 85 chr3 26028785 26029092 -201495486 - L1ME4a LINE L1 -206 5915 5612 243 0 0 0 chr3 26029591 26029618 -201494960 + (T)n Simple_repeat Simple_repeat 1 27 0 527 283 69 6 chr3 26029920 26030093 -201494485 + MIR SINE MIR 64 247 -15 724 352 157 33 chr3 26030175 26030625 -201493953 + L2 LINE L2 210 603 -2711 2184 112 0 0 chr3 26030625 26030911 -201493667 - AluSx SINE Alu -26 286 1 724 352 157 33 chr3 26030911 26032027 -201492551 + L2 LINE L2 603 1970 -1344 30 59 0 0 chr3 26032790 26032841 -201491737 + AT_rich Low_complexity Low_complexity 1 51 0 243 0 0 0 chr3 26034897 26034924 -201489654 + (TG)n Simple_repeat Simple_repeat 2 28 0 246 342 46 66 chr3 26035625 26035777 -201488801 - L3b LINE CR1 -38 1545 1397 237 289 79 44 chr3 26035799 26035913 -201488665 + MIR SINE MIR 71 188 -74 507 314 14 45 chr3 26037193 26037413 -201487165 - MIR SINE MIR -14 248 36 268 43 21 21 chr3 26038041 26038088 -201486490 + (CA)n Simple_repeat Simple_repeat 1 47 0 210 37 0 0 chr3 26039231 26039258 -201485320 + (GA)n Simple_repeat Simple_repeat 2 28 0 304 339 83 39 chr3 26039650 26039830 -201484748 + MER5A DNA MER1_type 2 189 0 251 284 140 26 chr3 26042077 26042306 -201482272 + L1ME LINE L1 5563 5817 -304 751 271 60 5 chr3 26042920 26043138 -201481440 + MIR SINE MIR 33 262 0 189 390 50 25 chr3 26045087 26045246 -201479332 + L3b LINE CR1 1420 1582 -1 943 189 9 47 chr3 26046555 26046767 -201477811 - MER3 DNA MER1_type -1 208 5 238 333 126 49 chr3 26047178 26047526 -201477052 + L2 LINE L2 2328 2702 -612 1260 228 96 3 chr3 26047814 26048126 -201476452 + MER58B DNA MER1_type 1 341 0 284 310 7 71 chr3 26048230 26048385 -201476193 + L2 LINE L2 3160 3304 -9 240 287 0 32 chr3 26048455 26048549 -201476029 + (CATATA)n Simple_repeat Simple_repeat 6 96 0 246 128 0 0 chr3 26049651 26049690 -201474888 + (A)n Simple_repeat Simple_repeat 1 39 0 273 264 63 25 chr3 26049949 26050108 -201474470 - L1ME LINE L1 -614 5507 5343 596 312 74 28 chr3 26050120 26050335 -201474243 + MIR SINE MIR 23 247 -15 2423 15 0 0 chr3 26052859 26053131 -201471447 - L1P1 LINE L1 -505 5650 5379 405 49 98 0 chr3 26053131 26053185 -201471393 + L1PA4 LINE L1 6088 6154 -1 1102 281 71 20 chr3 26053446 26053895 -201470683 - MLT1L LTR MaLR -4 611 140 478 266 70 0 chr3 26054109 26054237 -201470341 + L2 LINE L2 3177 3313 0 1581 195 26 35 chr3 26055009 26055352 -201469226 + MLT1A1 LTR MaLR 26 365 0 1257 247 76 8 chr3 26055663 26056044 -201468534 + LTR16C LTR ERVL 85 491 0 420 82 0 0 chr3 26056215 26056276 -201468302 + (CA)n Simple_repeat Simple_repeat 2 62 0 1134 286 58 39 chr3 26058199 26058786 -201465792 + L1MCc LINE L1 816 1413 -5010 * 6585 220 118 69 chr3 26058783 26059226 -201465352 + L1MD3 LINE L1 4763 5183 -2812 3159 104 11 7 chr3 26059226 26059676 -201464902 + MLT2A2 LTR ERVL 1 452 -1 6585 220 118 69 chr3 26059676 26059918 -201464660 + L1MD3 LINE L1 5183 5412 -2583 204 40 0 0 chr3 26059918 26059943 -201464635 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 6585 220 118 69 chr3 26059943 26061618 -201462960 + L1MD3 LINE L1 5412 7003 -992 512 259 12 8 chr3 26061618 26061746 -201462832 + MLT1F1 LTR MaLR 1 129 -445 6585 220 118 69 chr3 26061746 26062131 -201462447 + L1MD3 LINE L1 7003 7368 -627 2477 121 22 0 chr3 26062131 26062487 -201462091 - THE1B LTR MaLR 0 364 1 6585 220 118 69 chr3 26062487 26062688 -201461890 + L1MD3 LINE L1 7368 7995 0 538 310 73 39 chr3 26062875 26063107 -201461471 - MIR SINE MIR 0 262 23 248 335 138 5 chr3 26063107 26063310 -201461268 - MIR SINE MIR 0 262 29 491 305 60 92 chr3 26064312 26064561 -201460017 - L2 LINE L2 0 3272 3032 738 213 113 0 chr3 26065329 26065489 -201459089 + MER45A DNA AcHobo 1 178 0 1521 195 128 19 chr3 26065727 26066148 -201458430 - MLT1C LTR MaLR 0 467 1 363 367 14 7 chr3 26066426 26066565 -201458013 - MIR3 SINE MIR -23 185 46 495 272 16 86 chr3 26066719 26066962 -201457616 - MER102b DNA MER1_type -16 325 100 309 305 83 31 chr3 26068335 26068503 -201456075 + MIR SINE MIR 15 191 -61 233 162 0 0 chr3 26069512 26069549 -201455029 + L2 LINE L2 3255 3291 -22 47 19 0 0 chr3 26070076 26070130 -201454448 + AT_rich Low_complexity Low_complexity 1 54 0 196 269 19 0 chr3 26071287 26071339 -201453239 - L2 LINE L2 0 3313 3261 981 119 0 0 chr3 26073300 26073451 -201451127 + (TA)n Simple_repeat Simple_repeat 2 152 0 1839 135 25 14 chr3 26073451 26073732 -201450846 - AluJo SINE Alu -28 284 1 1218 299 31 43 chr3 26075433 26076015 -201448563 - L1MC3 LINE L1 -1263 6522 5948 1530 207 31 0 chr3 26076427 26076751 -201447827 + L1 LINE L1 4910 5243 -903 387 208 35 34 chr3 26076961 26077320 -201447258 + (TATAA)n Simple_repeat Simple_repeat 1 359 0 280 232 96 0 chr3 26077330 26077455 -201447123 + (TATAG)n Simple_repeat Simple_repeat 2 138 0 415 146 20 26 chr3 26077462 26077613 -201446965 + (TATAA)n Simple_repeat Simple_repeat 5 154 0 1911 149 48 25 chr3 26077808 26078164 -201446414 - THE1B LTR MaLR 0 364 1 10952 106 25 0 chr3 26078164 26079706 -201444872 - THE1B-int LTR MaLR 0 1580 1 1893 128 110 27 chr3 26079706 26080042 -201444536 - THE1B LTR MaLR 0 364 1 1945 132 31 0 chr3 26082555 26082679 -201441899 + AluSx SINE Alu 1 120 -192 192 40 0 0 chr3 26082679 26082704 -201441874 + (TA)n Simple_repeat Simple_repeat 1 25 0 1945 132 31 0 chr3 26082704 26082867 -201441711 + AluSx SINE Alu 120 297 -15 193 286 0 0 chr3 26083261 26083310 -201441268 + L2 LINE L2 3265 3313 0 452 256 0 62 chr3 26084181 26084310 -201440268 + FLAM_A SINE Alu 3 123 -10 23 78 0 0 chr3 26084667 26084718 -201439860 + AT_rich Low_complexity Low_complexity 1 51 0 1011 184 190 53 chr3 26085226 26085547 -201439031 - MLT1A1 LTR MaLR 0 365 1 246 291 39 29 chr3 26086424 26086527 -201438051 - MIR SINE MIR -60 148 45 354 294 21 21 chr3 26086978 26087121 -201437457 + MARNA DNA Mariner 88 230 -356 589 197 24 31 chr3 26087167 26087294 -201437284 - LTR67 LTR ERVL 0 557 432 231 271 86 48 chr3 26087690 26087856 -201436722 + MLT1J1 LTR MaLR 34 249 -262 230 294 166 43 chr3 26087859 26088022 -201436556 + MLT1J2 LTR MaLR 254 436 -14 766 271 95 21 chr3 26089823 26090180 -201434398 - MLT1H LTR MaLR -153 402 43 2114 130 0 0 chr3 26090325 26090626 -201433952 - AluSx SINE Alu -11 301 1 308 304 0 0 chr3 26090698 26090777 -201433801 + L2 LINE L2 3192 3270 -2 543 245 155 0 chr3 26091026 26091181 -201433397 + MER5A DNA MER1_type 9 187 -2 25 51 0 0 chr3 26091822 26091861 -201432717 + AT_rich Low_complexity Low_complexity 1 39 0 693 186 137 0 chr3 26092389 26092550 -201432028 - MER5A DNA MER1_type 0 189 7 7308 168 18 10 chr3 26092590 26095041 -201429537 + L1PB1 LINE L1 3688 6151 0 428 344 87 5 chr3 26095151 26095346 -201429232 + MIR SINE MIR 52 262 0 278 300 0 29 chr3 26095488 26095558 -201429020 - L2 LINE L2 0 3272 3205 1653 237 47 81 chr3 26095588 26095984 -201428594 - MLT1F LTR MaLR -8 534 161 2300 93 3 3 chr3 26095984 26096284 -201428294 + AluSx SINE Alu 1 300 -12 1653 237 47 81 chr3 26096284 26096440 -201428138 - MLT1F LTR MaLR -381 161 1 508 217 83 0 chr3 26096928 26097048 -201427530 - MER94 DNA DNA 0 134 5 180 0 0 0 chr3 26097625 26097645 -201426933 + (A)n Simple_repeat Simple_repeat 1 20 0 1905 172 20 24 chr3 26098868 26099359 -201425219 - L1M4 LINE L1 -526 5658 5171 238 315 97 24 chr3 26099539 26099704 -201424874 - MIR SINE MIR -38 224 48 22 35 0 0 chr3 26100092 26100121 -201424457 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr3 26100134 26100177 -201424401 + AT_rich Low_complexity Low_complexity 1 43 0 184 390 0 0 chr3 26100955 26101050 -201423528 + MIR SINE MIR 37 131 -77 * 347 298 107 16 chr3 26100981 26101157 -201423421 + L2 LINE L2 3083 3308 -5 1406 179 75 48 chr3 26102348 26102683 -201421895 + MER2 DNA MER2_type 1 344 0 302 216 57 45 chr3 26102950 26103038 -201421540 - MLT1J1 LTR MaLR -13 433 345 1815 268 105 27 chr3 26103095 26103178 -201421400 + L1ME3A LINE L1 4961 5036 -1134 748 218 93 10 chr3 26103178 26103371 -201421207 + MER3 DNA MER1_type 1 209 0 1815 268 105 27 chr3 26103371 26103759 -201420819 + L1ME3A LINE L1 5036 5392 -778 198 0 0 0 chr3 26103759 26103781 -201420797 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 1815 268 105 27 chr3 26103781 26104424 -201420154 + L1ME3A LINE L1 5392 6161 -9 252 212 15 61 chr3 26104667 26104733 -201419845 - L2 LINE L2 0 3313 3251 213 247 93 31 chr3 26105167 26105264 -201419314 + L2 LINE L2 3150 3252 -20 329 274 101 94 chr3 26106696 26107003 -201417575 - MLT1J LTR MaLR -101 410 102 239 312 0 13 chr3 26107059 26107136 -201417442 - MLT1L LTR MaLR -538 77 2 4288 185 32 15 chr3 26107683 26108697 -201415881 + L1MB3 LINE L1 5149 6181 -2 4830 90 1 10 chr3 26210978 26211680 -201312898 - L1P LINE L1 -893 5253 4558 3641 78 4 0 chr3 26211680 26212160 -201312418 + L1PA7 LINE L1 5655 6143 -11 446 271 49 0 chr3 26213547 26213691 -201310887 - MIR SINE MIR 0 262 112 184 42 0 0 chr3 26213851 26213875 -201310703 + MIR SINE MIR 116 139 -123 328 227 0 0 chr3 26214138 26214213 -201310365 + MER116 DNA Mariner 1 75 -5 441 0 0 0 chr3 26215807 26215856 -201308722 + (CA)n Simple_repeat Simple_repeat 2 50 0 1101 234 78 57 chr3 26216771 26217104 -201307474 - LTR16C LTR ERVL 0 491 152 919 343 52 41 chr3 26217409 26218123 -201306455 - HERV16 LTR ERVL -441 5323 4602 635 342 29 26 chr3 26218188 26218498 -201306080 - HERV16 LTR ERVL -1225 4429 4119 376 312 28 57 chr3 26218636 26218918 -201305660 - HERV16 LTR ERVL -1698 3956 3683 777 209 48 147 chr3 26218969 26219385 -201305193 + MLT2D LTR ERVL 90 464 0 957 324 40 53 chr3 26219430 26220136 -201304442 - HERV16 LTR ERVL -2850 2146 1492 1106 184 10 0 chr3 26220546 26220753 -201303825 - MER3 DNA MER1_type 0 209 1 266 349 30 48 chr3 26220842 26221008 -201303570 - MIR SINE MIR -72 190 28 1832 240 42 38 chr3 26221197 26221999 -201302579 + L1MEc LINE L1 1200 2148 -4415 421 305 41 50 chr3 26221992 26222428 -201302150 + L1M4 LINE L1 1731 2162 -4234 * 458 112 90 34 chr3 26222417 26222506 -201302072 + L1M4 LINE L1 2383 2476 -3739 * 1080 259 37 0 chr3 26222499 26222882 -201301696 + L1M4 LINE L1 2867 3263 -2952 * 13773 186 36 22 chr3 26222877 26227126 -201297452 + L1MA3 LINE L1 12 4201 -3523 1646 179 0 74 chr3 26227126 26227271 -201297307 + AluJo SINE Alu 1 155 -157 2228 62 14 3 chr3 26227271 26227560 -201297018 + AluY SINE Alu 1 292 -19 1646 179 0 74 chr3 26227560 26227750 -201296828 + AluJo SINE Alu 155 311 -1 13773 186 36 22 chr3 26227750 26229299 -201295279 + L1MA3 LINE L1 4201 5727 -1997 2726 7 0 0 chr3 26229299 26229592 -201294986 - AluYa5 SINE Alu -13 298 6 13773 186 36 22 chr3 26229592 26231041 -201293537 + L1MA3 LINE L1 5727 7724 0 24 0 0 0 chr3 26231048 26231072 -201293506 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr3 26231252 26231297 -201293281 + AT_rich Low_complexity Low_complexity 1 45 0 16365 94 18 3 chr3 26231504 26234141 -201290437 - L1P3 LINE L1 -534 5620 2946 2993 225 54 14 chr3 26234147 26234568 -201290010 + L1M4 LINE L1 4426 4829 -1386 252 59 0 0 chr3 26234568 26234602 -201289976 + (TG)n Simple_repeat Simple_repeat 1 34 0 2993 225 54 14 chr3 26234602 26235039 -201289539 + L1M4 LINE L1 4829 5318 -897 265 143 95 16 chr3 26235042 26235105 -201289473 + L1M4 LINE L1 5504 5571 -662 751 222 26 32 chr3 26235704 26235893 -201288685 - MER5A DNA MER1_type 0 189 2 2151 119 0 3 chr3 26236378 26236671 -201287907 - AluSc SINE Alu -17 292 1 235 0 0 0 chr3 26236920 26236947 -201287631 - MLT2A1 LTR ERVL 0 444 418 * 2058 85 42 16 chr3 26236945 26237252 -201287326 - MLT2A1 LTR ERVL -129 315 1 331 411 15 0 chr3 26237263 26237460 -201287118 - MER93a-int LTR ERV1 -1085 6452 6253 2550 234 66 52 chr3 26237939 26238967 -201285611 - MER93a-int LTR ERV1 -1480 3456 2866 1606 138 14 3 chr3 26238967 26239250 -201285328 + L1MA1 LINE L1 6017 6302 0 2550 234 66 52 chr3 26239250 26239654 -201284924 - MER93a-int LTR ERV1 -2070 2866 2469 2221 83 0 23 chr3 26239738 26240038 -201284540 + AluY SINE Alu 1 293 -18 446 229 54 75 chr3 26240054 26240409 -201284169 - MER93a-int LTR ERV1 -2549 2387 2106 1264 182 71 43 chr3 26240417 26240697 -201283881 + Tigger2a DNA MER2_type 5 292 -142 2357 50 4 0 chr3 26240803 26241122 -201283456 + AluY SINE Alu 1 320 0 685 214 21 28 chr3 26241124 26241269 -201283309 + Tigger2a DNA MER2_type 301 444 0 385 247 147 0 chr3 26241283 26241433 -201283145 - MER93a-int LTR ERV1 -2855 2081 1910 367 186 116 0 chr3 26241527 26241613 -201282965 - MER34 LTR ERV1 -446 96 1 1364 200 76 56 chr3 26241806 26242475 -201282103 - MER93a-int LTR ERV1 -2846 3017 882 278 288 61 0 chr3 26242798 26242864 -201281714 - MER93a-int LTR ERV1 -7238 299 230 788 257 133 22 chr3 26243059 26243421 -201281157 - MER93a LTR ERV1 0 402 1 248 172 0 35 chr3 26244495 26244553 -201280025 - MLT2C1 LTR ERVL 0 520 465 228 163 0 0 chr3 26244610 26244653 -201279925 + (TA)n Simple_repeat Simple_repeat 2 44 0 261 98 0 0 chr3 26244656 26244697 -201279881 + (GA)n Simple_repeat Simple_repeat 2 42 0 1466 167 22 51 chr3 26244720 26245031 -201279547 - MLT2C1 LTR ERVL -95 302 1 2194 252 68 19 chr3 26246865 26247130 -201277448 + MLT1E1 LTR MaLR 1 252 -402 2535 76 51 0 chr3 26247130 26247486 -201277092 + L1PA7 LINE L1 5770 6143 -11 2194 252 68 19 chr3 26247486 26247839 -201276739 + MLT1E1 LTR MaLR 252 649 -5 342 0 0 0 chr3 26248550 26248588 -201275990 + (TG)n Simple_repeat Simple_repeat 2 39 0 266 357 9 27 chr3 26249517 26249629 -201274949 + L2 LINE L2 3197 3306 -7 1319 241 72 38 chr3 26249808 26250381 -201274197 + L1M4 LINE L1 881 1472 -5070 25 51 0 0 chr3 26250632 26250671 -201273907 + AT_rich Low_complexity Low_complexity 1 39 0 1006 308 23 34 chr3 26252624 26253010 -201271568 - LTR16A LTR ERVL -13 437 56 398 360 31 22 chr3 26253673 26253898 -201270680 - LTR16C LTR ERVL -102 389 163 696 293 15 10 chr3 26255117 26255322 -201269256 - MIR SINE MIR -55 207 2 191 229 48 96 chr3 26257155 26257238 -201267340 - L2 LINE L2 -5 3267 3189 479 133 4 0 chr3 26257492 26257573 -201267005 + MSTB1 LTR MaLR 257 409 -23 329 250 53 0 chr3 26258319 26258395 -201266183 + AluSg SINE Alu 3 82 -218 1194 173 119 34 chr3 26258519 26258814 -201265764 + THE1C LTR MaLR 56 375 0 6522 144 14 46 chr3 26258816 26259980 -201264598 + THE1C-int LTR MaLR 3 1128 -452 1098 287 117 29 chr3 26260079 26260525 -201264053 - MLT1G1 LTR MaLR -110 485 1 22 70 0 0 chr3 26260819 26260862 -201263716 + AT_rich Low_complexity Low_complexity 1 43 0 3104 193 39 29 chr3 26261065 26262450 -201262128 + L1MC1 LINE L1 4432 5830 -514 1331 161 22 0 chr3 26262450 26262674 -201261904 + MSTB LTR MaLR 1 229 -197 1679 189 151 17 chr3 26262696 26263068 -201261510 + MSTB LTR MaLR 5 426 0 1095 158 25 49 chr3 26263068 26263269 -201261309 + MSTB LTR MaLR 231 426 0 8677 191 17 21 chr3 26263269 26264910 -201259668 + MSTB-int LTR MaLR 1 1634 -17 2341 172 16 37 chr3 26264929 26265364 -201259214 + MSTB LTR MaLR 1 426 0 2644 165 18 12 chr3 26265364 26265867 -201258711 + L1MC1 LINE L1 5826 6331 -2 237 83 0 0 chr3 26265870 26265906 -201258672 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 22 35 0 0 chr3 26266620 26266649 -201257929 + AT_rich Low_complexity Low_complexity 1 29 0 180 233 116 70 chr3 26267446 26267532 -201257046 - MIR SINE MIR -112 150 61 1008 182 11 16 chr3 26267565 26267752 -201256826 - MER5A DNA MER1_type -3 186 1 379 149 14 27 chr3 26268408 26268482 -201256096 - L1PA10 LINE L1 -3 6165 6093 514 307 36 12 chr3 26268496 26268662 -201255916 - MIR SINE MIR -82 180 11 287 48 0 24 chr3 26268892 26268934 -201255644 + (CAA)n Simple_repeat Simple_repeat 2 42 0 262 333 62 56 chr3 26269496 26269658 -201254920 - MIR SINE MIR -54 208 46 9392 181 79 65 chr3 26270015 26271497 -201253081 + L1MCa LINE L1 6 1466 -4960 189 0 0 0 chr3 26271497 26271518 -201253060 + (TG)n Simple_repeat Simple_repeat 2 22 0 4275 137 14 3 chr3 26271519 26272225 -201252353 - L1MA3 LINE L1 -15 6290 5577 9392 181 79 65 chr3 26272225 26272642 -201251936 + L1MCa LINE L1 1466 1876 -4550 1756 211 79 107 chr3 26272642 26273490 -201251088 + LTR1B LTR ERV1 1 824 -2 9392 181 79 65 chr3 26273490 26274090 -201250488 + L1MCa LINE L1 1876 2557 -3869 1861 179 0 3 chr3 26274090 26274397 -201250181 + AluSx SINE Alu 1 306 -6 9392 181 79 65 chr3 26274397 26274880 -201249698 + L1MCa LINE L1 2557 3032 -3394 297 159 15 0 chr3 26274882 26274949 -201249629 + L1MC1 LINE L1 2507 2566 -3860 2523 251 38 6 chr3 26276536 26277377 -201247201 + L1MC1 LINE L1 3118 3985 -2441 873 269 52 3 chr3 26277367 26277691 -201246887 + L1MC1 LINE L1 4613 4952 -1474 * 3713 170 55 3 chr3 26277803 26278513 -201246065 + L1MC1 LINE L1 5867 6613 0 1526 203 39 25 chr3 26278514 26278873 -201245705 + L1MB8 LINE L1 5808 6171 -7 243 109 16 47 chr3 26279761 26279825 -201244753 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 436 272 79 45 chr3 26280152 26280466 -201244112 - MLT1H LTR MaLR -110 299 2 202 258 91 0 chr3 26280494 26280560 -201244018 + MIR SINE MIR 123 194 -68 240 236 14 0 chr3 26280740 26280812 -201243766 + L1ME3A LINE L1 6093 6165 -5 792 297 80 21 chr3 26281517 26281995 -201242583 + L1ME3A LINE L1 3498 4003 -2143 7812 16 1 0 chr3 26282170 26283069 -201241509 - L1PA3 LINE L1 -2 6153 5254 1600 170 3 14 chr3 26283249 26283531 -201241047 - L1PA16 LINE L1 -105 6061 5783 824 275 64 42 chr3 26283561 26284182 -201240396 + L1ME3A LINE L1 5148 5795 -375 2200 125 31 22 chr3 26284182 26284541 -201240037 + THE1B LTR MaLR 3 364 0 824 275 64 42 chr3 26284541 26284703 -201239875 + L1ME3A LINE L1 5795 5952 -218 32 26 0 0 chr3 26284877 26284916 -201239662 + AT_rich Low_complexity Low_complexity 1 39 0 1138 150 33 0 chr3 26285251 26285431 -201239147 + THE1B LTR MaLR 1 186 -178 6927 99 6 13 chr3 26285457 26287275 -201237303 - L1PA7 LINE L1 -2 6467 4660 42410 35 29 1 chr3 26287275 26293251 -201231327 - L1PA2 LINE L1 -7 6148 1 2411 98 9 0 chr3 26293249 26293585 -201230993 - L1PA7 LINE L1 -1785 4676 4338 * 1249 130 5 10 chr3 26293583 26293775 -201230803 - L1PA7 LINE L1 -6265 196 6 * 925 170 67 6 chr3 26293787 26293952 -201230626 + THE1B LTR MaLR 190 364 0 333 239 43 0 chr3 26294073 26294165 -201230413 - MIR SINE MIR -46 216 121 1670 284 74 15 chr3 26294516 26295718 -201228860 + L1ME3A LINE L1 4885 6162 -8 403 206 31 21 chr3 26295841 26295938 -201228640 + MER69 DNA AcHobo 4 101 -2425 4601 202 70 112 chr3 26296109 26297941 -201226637 - MER52A LTR ERV1 0 1755 1 2035 106 0 56 chr3 26298091 26298394 -201226184 + AluSx SINE Alu 1 286 -26 447 241 124 44 chr3 26299435 26299572 -201225006 + MER5A DNA MER1_type 2 149 -40 410 255 158 23 chr3 26300972 26301231 -201223347 - L1ME4a LINE L1 -9 6112 5819 1465 180 25 3 chr3 26301351 26301668 -201222910 - MER33 DNA MER1_type 0 324 1 527 225 24 6 chr3 26302149 26302318 -201222260 + Charlie2 DNA MER1_type 2509 2680 -182 40 21 0 0 chr3 26302354 26302401 -201222177 + AT_rich Low_complexity Low_complexity 1 47 0 321 235 157 0 chr3 26302506 26302608 -201221970 + MIR SINE MIR 89 206 -56 2246 115 7 0 chr3 26302682 26302986 -201221592 - AluSx SINE Alu -6 306 1 564 309 9 33 chr3 26302992 26303202 -201221376 - L2 LINE L2 -4 3309 3105 718 334 38 51 chr3 26303303 26303732 -201220846 + L2 LINE L2 2792 3218 -95 198 206 59 15 chr3 26303809 26303877 -201220701 - MIR SINE MIR -45 217 147 675 301 85 45 chr3 26303880 26304328 -201220250 - MLT1H LTR MaLR -5 544 79 218 313 0 5 chr3 26304367 26304438 -201220140 - MIR3 SINE MIR -36 172 102 27 29 0 0 chr3 26305505 26305539 -201219039 + AT_rich Low_complexity Low_complexity 1 34 0 191 287 56 46 chr3 26306561 26306669 -201217909 + L2 LINE L2 2869 2977 -295 601 289 34 21 chr3 26306723 26307112 -201217466 + L1MEc LINE L1 1445 1752 -4463 301 255 118 88 chr3 26307177 26307585 -201216993 + L1MCc LINE L1 36 455 -5968 9894 171 21 31 chr3 26307588 26310837 -201213741 + L1P3 LINE L1 12 3275 -3186 2363 216 43 16 chr3 26311188 26311901 -201212677 - L1MB7 LINE L1 -242 5942 5213 659 243 5 33 chr3 26312732 26312942 -201211636 + MER3 DNA MER1_type 1 204 -5 2229 210 68 38 chr3 26313093 26313727 -201210851 - L1MB8 LINE L1 -38 6140 5488 6475 82 14 1 chr3 26314052 26315815 -201208763 + L1PA8 LINE L1 4399 6172 0 314 335 7 26 chr3 26316084 26316239 -201208339 + L1MCc LINE L1 819 970 -5453 1873 280 64 10 chr3 26316243 26317043 -201207535 + L1ME3A LINE L1 5317 6159 -11 29 28 0 0 chr3 26317044 26317080 -201207498 + AT_rich Low_complexity Low_complexity 1 36 0 1574 85 0 9 chr3 26317667 26317891 -201206687 + L1PA13 LINE L1 5941 6162 -1 198 214 0 0 chr3 26318003 26318045 -201206533 - MIR SINE MIR -109 153 112 828 259 173 30 chr3 26318107 26318359 -201206219 - LTR16C LTR ERVL -3 488 165 1810 121 96 39 chr3 26318359 26318714 -201205864 - THE1C LTR MaLR 0 375 1 828 259 173 30 chr3 26318714 26318831 -201205747 - LTR16C LTR ERVL -326 165 66 381 319 61 44 chr3 26318985 26319345 -201205233 + MLT1K LTR MaLR 211 576 -12 591 261 36 52 chr3 26319353 26319683 -201204895 - HsTC2 DNA Tc2 -11 1887 1563 1011 231 94 44 chr3 26319719 26320771 -201203807 - L1MB5 LINE L1 -201 5973 4868 1976 190 33 32 chr3 26320772 26321322 -201203256 - MLT2A2 LTR ERVL 0 554 1 2394 153 26 16 chr3 26321326 26321918 -201202660 + MER4E LTR ERV1 1 766 0 326 297 34 34 chr3 26321921 26322039 -201202539 - L1MB5 LINE L1 -1285 4861 4744 1750 207 127 50 chr3 26322514 26323175 -201201403 + MER50 LTR ERV1 1 712 -22 2559 11 0 0 chr3 26323193 26323472 -201201106 - AluY SINE Alu -2 309 31 26 98 0 0 chr3 26323509 26323591 -201200987 + AT_rich Low_complexity Low_complexity 1 82 0 194 308 0 19 chr3 26323803 26323855 -201200723 - MIR SINE MIR -138 70 20 22 56 0 0 chr3 26323970 26324006 -201200572 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chr3 26324136 26324164 -201200414 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 26324555 26324576 -201200002 + AT_rich Low_complexity Low_complexity 1 21 0 204 171 24 0 chr3 26324669 26324710 -201199868 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 224 336 103 9 chr3 26326270 26326386 -201198192 + MIR3 SINE MIR 81 207 -1 2437 73 0 0 chr3 26326783 26327083 -201197495 - AluY SINE Alu -11 300 1 296 109 0 16 chr3 26327855 26327919 -201196659 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 185 378 12 24 chr3 26328234 26328316 -201196262 - MIR SINE MIR -85 123 43 2253 121 0 0 chr3 26328432 26328737 -201195841 - AluSg SINE Alu -5 305 1 2307 77 7 0 chr3 26328882 26329169 -201195409 - AluY SINE Alu -14 297 9 1616 194 21 7 chr3 26329536 26329820 -201194758 + AluJb SINE Alu 2 289 -23 180 0 0 0 chr3 26329826 26329846 -201194732 + (TA)n Simple_repeat Simple_repeat 1 20 0 373 200 53 0 chr3 26330481 26330556 -201194022 - L2 LINE L2 -9 3304 3226 272 321 0 0 chr3 26330558 26330642 -201193936 - MIR SINE MIR -39 223 140 191 323 15 0 chr3 26330972 26331037 -201193541 - L2 LINE L2 -584 2730 2665 1220 207 37 52 chr3 26331041 26331312 -201193266 + AluJo SINE Alu 1 267 -45 244 321 46 0 chr3 26332570 26332701 -201191877 - MIR SINE MIR 0 262 126 248 259 0 0 chr3 26332882 26332940 -201191638 + MLT1J1 LTR MaLR 266 323 -123 234 285 141 62 chr3 26333652 26333908 -201190670 + MLT1J LTR MaLR 236 511 0 414 350 65 31 chr3 26334341 26334635 -201189943 - L2 LINE L2 -571 2743 2440 397 268 142 16 chr3 26334866 26335056 -201189522 - LTR16B LTR ERVL -65 399 186 307 296 20 0 chr3 26335253 26335351 -201189227 + MLT1I LTR MaLR 41 140 -269 424 240 130 7 chr3 26335421 26335567 -201189011 + MLT1I LTR MaLR 245 408 -1 226 265 0 29 chr3 26336032 26336100 -201188478 - MIR SINE MIR -98 164 99 535 273 83 30 chr3 26336677 26337121 -201187457 + MLT1G1 LTR MaLR 7 571 -24 1562 74 0 5 chr3 26337265 26337480 -201187098 - L1PA6 LINE L1 0 6154 5941 222 182 0 0 chr3 26338080 26338113 -201186465 + L2 LINE L2 3213 3245 -27 199 47 0 93 chr3 26342730 26342773 -201181805 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 31 44 0 0 chr3 26343460 26343505 -201181073 + AT_rich Low_complexity Low_complexity 1 45 0 26 0 0 0 chr3 26343594 26343620 -201180958 + AT_rich Low_complexity Low_complexity 1 26 0 194 91 30 0 chr3 26343816 26343849 -201180729 + (CA)n Simple_repeat Simple_repeat 2 35 0 2384 107 0 0 chr3 26344398 26344707 -201179871 + AluSx SINE Alu 2 310 -2 2252 93 3 7 chr3 26345365 26345675 -201178903 - AluSg1 SINE Alu 0 309 1 333 321 111 59 chr3 26346849 26347406 -201177172 + L2 LINE L2 2317 2902 -412 24 0 0 0 chr3 26348707 26348731 -201175847 + AT_rich Low_complexity Low_complexity 1 24 0 288 303 45 6 chr3 26349476 26349654 -201174924 - L1MC/D LINE L1 -2333 5475 5291 236 26 26 0 chr3 26349858 26349896 -201174682 - L1MA3 LINE L1 0 6305 6267 651 302 132 60 chr3 26350109 26351195 -201173383 - L1MC/D LINE L1 -1306 4840 3677 251 282 34 27 chr3 26352355 26352370 -201172208 - L1MA10 LINE L1 0 6334 6320 748 224 127 17 chr3 26352370 26352607 -201171971 - L1ME1 LINE L1 -2 6164 5902 4059 181 15 15 chr3 26352612 26353336 -201171242 + MER44D DNA MER2_type 10 605 0 284 248 10 10 chr3 26353336 26353437 -201171141 - L1ME1 LINE L1 -263 5903 5803 1004 211 98 90 chr3 26354125 26354254 -201170324 - MER114 LTR ERV 0 648 521 1710 137 59 42 chr3 26354254 26354560 -201170018 + AluSx SINE Alu 1 311 -1 1004 211 98 90 chr3 26354560 26355073 -201169505 - MER114 LTR ERV -127 521 1 21 0 0 0 chr3 26355241 26355262 -201169316 + AT_rich Low_complexity Low_complexity 1 21 0 39 38 0 0 chr3 26355297 26355350 -201169228 + AT_rich Low_complexity Low_complexity 1 53 0 28 0 0 0 chr3 26355585 26355613 -201168965 + AT_rich Low_complexity Low_complexity 1 28 0 2584 118 47 31 chr3 26355673 26356098 -201168480 + Tigger2a DNA MER2_type 1 432 -2 493 347 47 5 chr3 26356392 26356585 -201167993 - MIR SINE MIR -4 258 58 601 214 78 5 chr3 26356976 26357176 -201167402 + L1MA10 LINE L1 5964 6331 -3 265 73 455 0 chr3 26357225 26357280 -201167298 + MADE1 DNA Mariner 1 80 0 232 349 48 24 chr3 26358433 26358559 -201166019 + L2 LINE L2 3185 3313 0 222 208 56 83 chr3 26359071 26359143 -201165435 - MIR SINE MIR -71 191 122 1229 187 89 20 chr3 26359668 26359861 -201164717 - L1MD2 LINE L1 -2 6357 6179 198 91 0 0 chr3 26359861 26359894 -201164684 + (TG)n Simple_repeat Simple_repeat 2 34 0 1229 187 89 20 chr3 26359894 26360008 -201164570 - L1MD2 LINE L1 -180 6179 6074 2021 117 13 0 chr3 26360008 26360180 -201164398 - AluSq SINE Alu -11 302 123 189 0 0 0 chr3 26360180 26360201 -201164377 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 2021 117 13 0 chr3 26360201 26360326 -201164252 - AluSq SINE Alu -190 123 1 1229 187 89 20 chr3 26360326 26360499 -201164079 - L1MD2 LINE L1 -285 6074 5795 2324 60 40 0 chr3 26361247 26361545 -201163033 - AluY SINE Alu -1 310 1 226 283 0 0 chr3 26362285 26362338 -201162240 + (CA)n Simple_repeat Simple_repeat 2 54 0 323 315 0 0 chr3 26362584 26362673 -201161905 - L1MC4 LINE L1 -1340 6702 6614 314 296 23 0 chr3 26362683 26362771 -201161807 - L1MC4 LINE L1 -1339 6703 6614 207 0 0 0 chr3 26362789 26362812 -201161766 + (TA)n Simple_repeat Simple_repeat 1 23 0 2090 66 42 11 chr3 26362812 26363099 -201161479 - AluY SINE Alu -15 296 1 253 280 105 35 chr3 26364257 26364400 -201160178 + L2 LINE L2 3129 3281 -32 598 296 75 26 chr3 26364572 26364798 -201159780 - MIR SINE MIR -12 250 14 425 314 8 8 chr3 26365049 26365167 -201159411 + MER5B DNA MER1_type 3 120 -58 312 170 19 0 chr3 26365375 26365428 -201159150 - L2 LINE L2 -9 3263 3210 23 33 0 0 chr3 26365475 26365505 -201159073 + AT_rich Low_complexity Low_complexity 1 30 0 200 184 0 0 chr3 26365618 26365656 -201158922 + (CA)n Simple_repeat Simple_repeat 1 38 0 2399 28 42 0 chr3 26367220 26367508 -201157070 - AluY SINE Alu -11 300 1 3200 216 19 6 chr3 26368759 26369394 -201155184 + MER82 DNA MER2_type 1 643 -10 23 54 0 0 chr3 26369546 26369583 -201154995 + AT_rich Low_complexity Low_complexity 1 37 0 25 51 0 0 chr3 26370174 26370213 -201154365 + AT_rich Low_complexity Low_complexity 1 39 0 258 56 0 0 chr3 26372677 26372713 -201151865 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 236 140 0 20 chr3 26373251 26373301 -201151277 + LTR33A LTR ERVL 4 52 -471 655 274 136 37 chr3 26373314 26373690 -201150888 + L1M4 LINE L1 3074 3486 -2660 512 194 0 10 chr3 26374116 26374226 -201150352 + MLT1H LTR MaLR 18 137 -272 2347 73 0 10 chr3 26374246 26374560 -201150018 + AluY SINE Alu 1 311 0 870 205 139 93 chr3 26374576 26375073 -201149505 - MER114 LTR ERV -128 520 1 21 0 0 0 chr3 26375241 26375262 -201149316 + AT_rich Low_complexity Low_complexity 1 21 0 39 38 0 0 chr3 26375297 26375350 -201149228 + AT_rich Low_complexity Low_complexity 1 53 0 28 0 0 0 chr3 26375585 26375613 -201148965 + AT_rich Low_complexity Low_complexity 1 28 0 2584 118 47 31 chr3 26375673 26376098 -201148480 + Tigger2a DNA MER2_type 1 432 -2 470 352 47 5 chr3 26376392 26376585 -201147993 - MIR SINE MIR -4 258 58 1374 166 7 88 chr3 26378783 26379090 -201145488 + AluJo SINE Alu 31 312 0 405 0 0 0 chr3 26379627 26379672 -201144906 + (TG)n Simple_repeat Simple_repeat 1 45 0 201 74 0 0 chr3 26379672 26379699 -201144879 + (GA)n Simple_repeat Simple_repeat 2 28 0 397 122 27 0 chr3 26379988 26380062 -201144516 + A-rich Low_complexity Low_complexity 4 79 0 276 143 83 12 chr3 26380238 26380322 -201144256 + (TTTAA)n Simple_repeat Simple_repeat 1 90 0 213 319 0 0 chr3 26380339 26380408 -201144170 - L2 LINE L2 0 3313 3245 693 134 0 0 chr3 26382848 26382960 -201141618 + (GA)n Simple_repeat Simple_repeat 1 112 0 6079 130 33 21 chr3 26383433 26384473 -201140105 - L1MA5A LINE L1 -10 7003 5951 11843 210 6 13 chr3 26384641 26387321 -201137257 - L1MA5A LINE L1 -1280 5582 2920 273 198 47 9 chr3 26388094 26388200 -201136378 + (TA)n Simple_repeat Simple_repeat 2 111 0 31 92 0 0 chr3 26388613 26388700 -201135878 + AT_rich Low_complexity Low_complexity 1 87 0 2272 112 0 0 chr3 26389497 26389809 -201134769 + AluSx SINE Alu 1 312 0 327 161 0 0 chr3 26390702 26390758 -201133820 - MER94 DNA DNA -1 133 78 22 0 0 0 chr3 26390812 26390834 -201133744 + AT_rich Low_complexity Low_complexity 1 22 0 754 237 110 5 chr3 26391552 26392099 -201132479 - MER114 LTR ERV 0 648 2 23 86 0 0 chr3 26392570 26392628 -201131950 + AT_rich Low_complexity Low_complexity 1 58 0 258 56 0 0 chr3 26394234 26394270 -201130308 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 237 140 0 20 chr3 26394808 26394858 -201129720 + LTR33A LTR ERVL 4 52 -471 655 274 136 37 chr3 26394871 26395247 -201129331 + L1ME3A LINE L1 3074 3486 -2660 557 257 17 100 chr3 26395673 26395803 -201128775 + MLT1H LTR MaLR 18 157 -392 2254 60 0 11 chr3 26395803 26396087 -201128491 + AluY SINE Alu 1 281 -30 557 257 17 100 chr3 26396087 26396247 -201128331 + MLT1H LTR MaLR 157 327 -222 253 167 42 42 chr3 26396431 26396503 -201128075 + MLT1H LTR MaLR 478 549 0 589 311 74 9 chr3 26396519 26396869 -201127709 + L1ME3A LINE L1 3907 4279 -1867 692 282 131 34 chr3 26397328 26397843 -201126735 + L1ME3A LINE L1 5328 5884 -286 295 214 143 56 chr3 26398142 26398268 -201126310 + MER103 DNA DNA 26 162 -4 204 40 0 0 chr3 26398665 26398690 -201125888 + (A)n Simple_repeat Simple_repeat 1 25 0 764 197 34 30 chr3 26398972 26399206 -201125372 - LTR37A LTR ERV1 -1 425 191 929 193 45 6 chr3 26399254 26399430 -201125148 - MER58B DNA MER1_type 0 341 159 1607 128 88 81 chr3 26399943 26400294 -201124284 + MLT1B LTR MaLR 1 357 -33 1709 177 52 3 chr3 26400294 26400622 -201123956 + MER2 DNA MER2_type 1 344 0 1607 128 88 81 chr3 26400622 26400654 -201123924 + MLT1B LTR MaLR 357 387 -3 455 311 194 47 chr3 26400657 26401152 -201123426 - L2 LINE L2 -896 2418 1851 297 0 0 0 chr3 26401316 26401349 -201123229 + (TTG)n Simple_repeat Simple_repeat 1 33 0 2202 95 0 0 chr3 26401353 26401627 -201122951 - AluSc SINE Alu -35 274 1 276 30 0 0 chr3 26401922 26401955 -201122623 + (T)n Simple_repeat Simple_repeat 1 33 0 15472 40 5 11 chr3 26401977 26404699 -201119879 - L1PA4 LINE L1 -3 6152 3440 5067 172 27 20 chr3 26405304 26406938 -201117640 - L1P4 LINE L1 -384 5782 4139 28 0 0 0 chr3 26407184 26407212 -201117366 + AT_rich Low_complexity Low_complexity 1 28 0 2519 57 7 0 chr3 26407263 26407563 -201117015 - AluSc SINE Alu -7 302 1 214 232 402 0 chr3 26407737 26407849 -201116729 - MER5A DNA MER1_type -7 182 26 22 35 0 0 chr3 26410863 26410892 -201113686 + AT_rich Low_complexity Low_complexity 1 29 0 1106 181 86 102 chr3 26410943 26411246 -201113332 + AluJb SINE Alu 2 299 -3 314 242 81 48 chr3 26411416 26411540 -201113038 + L1M4 LINE L1 2249 2376 -3770 190 279 82 0 chr3 26412993 26413054 -201111524 + L2 LINE L2 3207 3272 0 2254 104 7 0 chr3 26413372 26413670 -201110908 - AluSq SINE Alu -13 300 1 386 257 20 0 chr3 26413695 26413796 -201110782 - MIR SINE MIR -14 248 146 898 315 99 3 chr3 26413889 26414241 -201110337 + LTR16C LTR ERVL 92 477 -14 256 322 0 22 chr3 26414242 26414332 -201110246 - MIR SINE MIR -127 135 48 567 248 47 51 chr3 26415707 26415921 -201108657 + MLT1J LTR MaLR 38 250 -261 1739 193 42 26 chr3 26415923 26416306 -201108272 + MLT1B LTR MaLR 1 389 -1 1524 118 0 5 chr3 26416327 26416547 -201108031 - L1P LINE L1 -1874 4272 4054 749 52 21 0 chr3 26416547 26416643 -201107935 + L1PA10 LINE L1 6067 6164 -4 546 183 29 0 chr3 26417021 26417125 -201107453 - MER20 DNA MER1_type 0 219 113 710 244 92 11 chr3 26417348 26417631 -201106947 - MER113 DNA MER1_type? -215 306 1 259 367 147 9 chr3 26417809 26418027 -201106551 - MIR SINE MIR 0 262 15 416 350 38 12 chr3 26418558 26418718 -201105860 - MIR3 SINE MIR -9 199 36 286 354 69 0 chr3 26418748 26418878 -201105700 - L3 LINE CR1 -31 1546 1408 1043 250 36 47 chr3 26418946 26419306 -201105272 + L2 LINE L2 2121 2476 -838 544 261 32 6 chr3 26419326 26419483 -201105095 + LTR41 LTR ERVL 6 166 -607 263 196 33 76 chr3 26419915 26420007 -201104571 + LTR41 LTR ERVL 679 766 -7 1121 261 52 50 chr3 26420018 26420420 -201104158 + LTR16A1 LTR ERVL 55 457 0 214 358 0 12 chr3 26420424 26420505 -201104073 - MIR SINE MIR -168 94 15 796 310 50 0 chr3 26422675 26422917 -201101661 - MIR SINE MIR -5 257 4 253 294 128 10 chr3 26423571 26423673 -201100905 + L2 LINE L2 2031 2144 -1170 1071 303 67 38 chr3 26423673 26423789 -201100789 + L2 LINE L2 2710 2821 -492 1976 168 107 19 chr3 26423789 26424218 -201100360 - MLT1C LTR MaLR 0 467 1 1071 303 67 38 chr3 26424218 26424670 -201099908 + L2 LINE L2 2821 3300 -13 242 361 70 51 chr3 26425267 26425425 -201099153 + L2 LINE L2 3103 3263 -9 1393 289 96 21 chr3 26426058 26426578 -201098000 + MER69 DNA AcHobo 1 559 -1967 693 222 83 28 chr3 26426554 26426806 -201097772 + MER69 DNA AcHobo 2260 2525 -1 * 2232 95 0 13 chr3 26427016 26427320 -201097258 - AluSc SINE Alu -9 300 1 180 152 0 0 chr3 26428676 26428709 -201095869 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 773 193 138 0 chr3 26429731 26429876 -201094702 - FRAM SINE Alu -1 165 1 1447 293 96 14 chr3 26431086 26431574 -201093004 - MLT1H1 LTR MaLR -8 547 20 594 265 135 30 chr3 26432495 26432725 -201091853 - MIR SINE MIR -6 256 3 188 378 9 27 chr3 26432888 26432999 -201091579 + MIR SINE MIR 37 145 -63 707 224 85 6 chr3 26433068 26433233 -201091345 - MER45A DNA AcHobo 0 178 1 293 316 74 111 chr3 26433812 26434457 -201090121 + L2 LINE L2 2637 3272 0 184 366 43 21 chr3 26435356 26435449 -201089129 + MIR SINE MIR 46 140 -122 642 259 103 22 chr3 26435586 26435771 -201088807 + MIR SINE MIR 63 262 0 714 343 83 41 chr3 26435851 26436411 -201088167 - L2 LINE L2 -26 3246 2673 711 159 140 6 chr3 26436451 26436608 -201087970 + MER5A DNA MER1_type 9 186 -3 338 333 14 54 chr3 26436608 26436755 -201087823 - L2 LINE L2 -722 2592 2452 552 272 63 16 chr3 26438194 26438475 -201086103 + LTR16B LTR ERVL 16 363 -101 637 219 11 115 chr3 26438567 26438846 -201085732 + L2 LINE L2 3064 3313 0 288 321 92 25 chr3 26439978 26440174 -201084404 + MIR SINE MIR 40 248 -14 582 82 0 0 chr3 26440651 26440736 -201083842 + (TCCCC)n Simple_repeat Simple_repeat 4 88 0 22 56 0 0 chr3 26440814 26440850 -201083728 + AT_rich Low_complexity Low_complexity 1 36 0 348 127 0 0 chr3 26442002 26442057 -201082521 + (TG)n Simple_repeat Simple_repeat 2 56 0 2615 146 35 9 chr3 26442596 26443054 -201081524 + L1MA4 LINE L1 5551 6020 -280 293 155 31 113 chr3 26443062 26443113 -201081465 + L1MB4 LINE L1 6091 6132 -48 1382 217 50 4 chr3 26443113 26443394 -201081184 + AluJo SINE Alu 1 294 -18 293 155 31 113 chr3 26443394 26443439 -201081139 + L1MB4 LINE L1 6132 6179 -1 779 158 6 22 chr3 26444233 26444416 -201080162 + GA-rich Low_complexity Low_complexity 1 180 0 335 307 10 10 chr3 26445217 26445318 -201079260 - MIR SINE MIR -66 142 42 25 65 0 0 chr3 26445948 26445994 -201078584 + AT_rich Low_complexity Low_complexity 1 46 0 808 273 45 21 chr3 26446168 26446454 -201078124 - L1ME3A LINE L1 -80 6090 5798 538 318 38 26 chr3 26447200 26447498 -201077080 - MLT1L LTR MaLR -14 601 215 227 244 0 77 chr3 26447563 26447641 -201076937 - MLT1J LTR MaLR -331 180 109 230 336 41 34 chr3 26447785 26447931 -201076647 - MIR SINE MIR -111 151 5 484 255 183 7 chr3 26448098 26448251 -201076327 + MER5A DNA MER1_type 10 189 0 611 284 76 47 chr3 26448260 26448535 -201076043 + L2 LINE L2 3029 3311 -2 1220 196 47 22 chr3 26449781 26450098 -201074480 + AluJo SINE Alu 1 324 0 223 318 79 0 chr3 26451172 26451235 -201073343 + L2 LINE L2 3141 3208 -64 1517 99 5 0 chr3 26451309 26451522 -201073056 + L1PB1 LINE L1 5935 6148 -3 21 0 0 0 chr3 26451645 26451666 -201072912 + AT_rich Low_complexity Low_complexity 1 21 0 411 272 25 51 chr3 26452843 26453001 -201071577 + MER117 DNA MER1_type 44 197 0 2580 52 0 0 chr3 26453313 26453622 -201070956 + AluY SINE Alu 1 309 -2 644 211 0 8 chr3 26454023 26454151 -201070427 + FLAM_A SINE Alu 3 129 -4 507 79 34 0 chr3 26454243 26454332 -201070246 + L1PA13 LINE L1 6071 6162 -1 21 36 0 0 chr3 26454332 26454360 -201070218 + AT_rich Low_complexity Low_complexity 1 28 0 37 69 0 0 chr3 26454494 26454566 -201070012 + AT_rich Low_complexity Low_complexity 1 72 0 2240 121 0 3 chr3 26454639 26454952 -201069626 + AluSx SINE Alu 1 312 0 234 242 45 0 chr3 26454957 26455023 -201069555 - MER113 DNA MER1_type? -451 70 2 42 20 0 0 chr3 26455479 26455528 -201069050 + AT_rich Low_complexity Low_complexity 1 49 0 712 249 144 18 chr3 26455642 26455871 -201068707 - MIR SINE MIR 0 262 5 289 241 28 0 chr3 26456006 26456114 -201068464 + (TA)n Simple_repeat Simple_repeat 1 111 0 2435 239 55 73 chr3 26456222 26457048 -201067530 - MER21B LTR ERV1 -52 811 1 213 269 125 19 chr3 26457093 26457197 -201067381 - L3b LINE CR1 -166 1417 1303 279 122 0 0 chr3 26457498 26457547 -201067031 + (TC)n Simple_repeat Simple_repeat 2 50 0 285 98 0 0 chr3 26457549 26457590 -201066988 + (CA)n Simple_repeat Simple_repeat 1 41 0 204 234 0 140 chr3 26457640 26457747 -201066831 - MER91C DNA MER1_type -17 123 32 371 302 89 40 chr3 26458836 26459061 -201065517 - MIR SINE MIR -6 256 21 235 294 35 24 chr3 26459069 26459154 -201065424 + MER58B DNA MER1_type 21 106 -235 552 216 64 0 chr3 26459179 26459304 -201065274 + MER58B DNA MER1_type 208 340 -1 2979 107 49 0 chr3 26460176 26460623 -201063955 - THE1A-int LTR MaLR -535 1045 577 1708 77 13 0 chr3 26460623 26460856 -201063722 - THE1A-int LTR MaLR -1344 236 1 2007 121 35 11 chr3 26460856 26461203 -201063375 - THE1A LTR MaLR 0 355 1 430 256 0 58 chr3 26461747 26461884 -201062694 + L1ME LINE L1 5530 5658 -463 23 33 0 0 chr3 26462118 26462148 -201062430 + AT_rich Low_complexity Low_complexity 1 30 0 184 308 132 33 chr3 26462158 26462340 -201062238 + L2 LINE L2 3112 3311 -2 266 356 61 44 chr3 26463472 26463652 -201060926 - MER91A DNA MER1_type -12 184 2 202 182 0 0 chr3 26464383 26464416 -201060162 + polypurine Low_complexity Low_complexity 1 33 0 1058 161 56 5 chr3 26464481 26464683 -201059895 + MER6 DNA MER2_type -13 198 -78 1587 70 4 3 chr3 26464683 26464918 -201059660 - pTR5 LTR ERV1 -2053 385 49 347 235 0 0 chr3 26464918 26464999 -201059579 - LTR30 LTR ERV1 -98 624 544 2291 167 103 37 chr3 26465003 26465755 -201058823 - pTR5 LTR ERV1 -417 2021 741 2577 142 22 2 chr3 26465755 26466164 -201058414 + MER6 DNA MER2_type 188 864 -1 657 303 45 0 chr3 26468204 26468382 -201056196 - MER91A DNA MER1_type -10 186 1 24 0 0 0 chr3 26468856 26468880 -201055698 + AT_rich Low_complexity Low_complexity 1 24 0 491 373 34 28 chr3 26469004 26469331 -201055247 - L3 LINE CR1 -15 1562 1234 442 310 45 20 chr3 26470029 26470313 -201054265 - MLT1L LTR MaLR 0 615 224 24 0 0 0 chr3 26470493 26470517 -201054061 + AT_rich Low_complexity Low_complexity 1 24 0 572 61 0 12 chr3 26470581 26470663 -201053915 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 27 0 0 0 chr3 26470720 26470747 -201053831 + AT_rich Low_complexity Low_complexity 1 27 0 1193 319 94 33 chr3 26471060 26471276 -201053302 + L2 LINE L2 2034 2235 -1079 2405 82 3 0 chr3 26471276 26471582 -201052996 + AluSp SINE Alu 1 307 -6 1193 319 94 33 chr3 26471582 26471969 -201052609 + L2 LINE L2 2235 2674 -640 200 180 0 20 chr3 26472081 26472131 -201052447 + CT-rich Low_complexity Low_complexity 4 52 0 512 333 0 0 chr3 26472220 26472367 -201052211 - MIR3 SINE MIR -3 205 59 318 26 0 0 chr3 26472659 26472698 -201051880 + (CA)n Simple_repeat Simple_repeat 2 40 0 228 233 33 100 chr3 26472842 26472962 -201051616 - L2 LINE L2 -211 3102 2991 223 367 50 25 chr3 26473055 26473175 -201051403 - L2 LINE L2 -502 2812 2690 327 279 25 81 chr3 26473264 26473425 -201051153 + L3 LINE CR1 1425 1576 -1 322 326 10 77 chr3 26473617 26473813 -201050765 - MER5A DNA MER1_type 0 189 7 294 340 122 13 chr3 26473934 26474090 -201050488 + MIR SINE MIR 76 248 -14 290 272 12 12 chr3 26524106 26524187 -201000391 + CT-rich Low_complexity Low_complexity 3 83 0 302 417 36 7 chr3 26524975 26525114 -200999464 + L2 LINE L2 3121 3263 -9 209 298 12 17 chr3 26525362 26525541 -200999037 + C-rich Low_complexity Low_complexity 1 178 0 265 272 117 31 chr3 26525714 26525876 -200998702 - L2 LINE L2 -1207 2107 1932 7205 105 8 2 chr3 26525943 26527009 -200997569 + L1PA13 LINE L1 1295 2366 -3780 1223 146 0 5 chr3 26527175 26527360 -200997218 + THE1B LTR MaLR 181 364 0 21 0 0 0 chr3 26527481 26527502 -200997076 + AT_rich Low_complexity Low_complexity 1 21 0 450 316 6 6 chr3 26527643 26527814 -200996764 + CT-rich Low_complexity Low_complexity 2 172 0 25 75 0 0 chr3 26528101 26528154 -200996424 + GC_rich Low_complexity Low_complexity 1 53 0 257 228 16 49 chr3 26528184 26528368 -200996210 + (CCGCG)n Simple_repeat Simple_repeat 1 178 0 22 42 0 0 chr3 26529445 26529469 -200995109 + AT_rich Low_complexity Low_complexity 1 24 0 9612 96 66 13 chr3 26529625 26530666 -200993912 - L1PBa LINE L1 -3939 2924 1624 2409 94 0 0 chr3 26530666 26530975 -200993603 + AluY SINE Alu 1 309 -2 9612 96 66 13 chr3 26530975 26531532 -200993046 - L1PBa LINE L1 -5239 1624 1098 1185 122 5 0 chr3 26531533 26531721 -200992857 - L1PBa LINE L1 -5814 1049 861 1805 149 12 28 chr3 26531725 26532046 -200992532 - THE1C LTR MaLR -40 335 20 5819 101 16 19 chr3 26532046 26533854 -200990724 + L1PA13 LINE L1 4354 6154 -9 243 0 0 0 chr3 26533854 26533881 -200990697 + (TA)n Simple_repeat Simple_repeat 1 27 0 713 281 128 76 chr3 26534246 26534744 -200989834 - MLT1H1 LTR MaLR 0 555 32 1890 155 7 0 chr3 26534803 26535087 -200989491 - AluSx SINE Alu -26 286 1 405 320 69 36 chr3 26535246 26535493 -200989085 + MIR SINE MIR 2 256 -6 234 0 0 0 chr3 26538748 26538774 -200985804 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2252 84 0 3 chr3 26538793 26539077 -200985501 - AluSc SINE Alu -26 283 1 1813 107 0 4 chr3 26539082 26539352 -200985226 - L1MA3 LINE L1 0 6305 6037 2594 185 136 49 chr3 26539679 26540109 -200984469 - L1MD2 LINE L1 -289 6053 5662 2246 113 7 0 chr3 26540109 26540418 -200984160 - AluSx SINE Alu 0 312 2 2594 185 136 49 chr3 26540418 26540787 -200983791 - L1MD2 LINE L1 -680 5662 5187 949 198 145 12 chr3 26540787 26541035 -200983543 - MER97a DNA MER1_type? -613 281 1 236 275 77 0 chr3 26541134 26541225 -200983353 + HAL1b LINE L1 578 675 -673 677 275 103 55 chr3 26541407 26541774 -200982804 - LTR16A LTR ERVL -48 402 18 517 204 10 0 chr3 26541842 26541945 -200982633 + FAM SINE Alu 71 174 -11 267 260 73 13 chr3 26542212 26542362 -200982216 + L1ME4a LINE L1 5963 6121 0 359 273 94 31 chr3 26542633 26542889 -200981689 - L1MD2 LINE L1 -2153 3976 3705 447 202 0 0 chr3 26542902 26542996 -200981582 + (TA)n Simple_repeat Simple_repeat 1 94 0 354 302 117 71 chr3 26543210 26544012 -200980566 - L1MD2 LINE L1 -2682 3447 2609 21 82 0 0 chr3 26544189 26544238 -200980340 + AT_rich Low_complexity Low_complexity 1 49 0 224 287 81 35 chr3 26544595 26544682 -200979896 + MIR SINE MIR 20 110 -152 264 383 22 36 chr3 26545151 26545373 -200979205 + L2 LINE L2 2536 2754 -560 265 407 38 25 chr3 26545549 26545785 -200978793 + L2 LINE L2 2699 2937 -377 213 39 0 0 chr3 26545881 26545907 -200978671 + (CCA)n Simple_repeat Simple_repeat 3 28 0 225 293 67 13 chr3 26546077 26546152 -200978426 + MLT1J LTR MaLR 72 150 -361 312 296 21 88 chr3 26546198 26546438 -200978140 - L1ME3A LINE L1 -219 5951 5728 233 357 10 10 chr3 26546545 26546643 -200977935 - L1MD2 LINE L1 -5595 524 427 606 286 84 14 chr3 26547447 26547660 -200976918 + MIR SINE MIR 20 247 -15 27 0 0 0 chr3 26547817 26547844 -200976734 + AT_rich Low_complexity Low_complexity 1 27 0 1080 8 0 0 chr3 26547844 26547967 -200976611 - L1HS LINE L1 0 6155 6033 3875 159 50 18 chr3 26548281 26548967 -200975611 - MER50 LTR ERV1 -26 708 1 374 276 135 22 chr3 26549079 26549390 -200975188 + L1MC/D LINE L1 5267 5612 -2196 191 309 12 24 chr3 26552293 26552377 -200972201 - MIR SINE MIR -56 206 124 23 0 0 0 chr3 26553304 26553327 -200971251 + AT_rich Low_complexity Low_complexity 1 23 0 34 0 0 0 chr3 26556644 26556678 -200967900 + AT_rich Low_complexity Low_complexity 1 34 0 36825 63 2 2 chr3 26557820 26563372 -200961206 + L1PA5 LINE L1 596 6145 -9 401 264 16 25 chr3 26563688 26563809 -200960769 - MER103 DNA DNA -46 120 1 219 371 77 21 chr3 26564097 26564240 -200960338 - MIR3 SINE MIR 0 208 58 434 302 49 65 chr3 26564525 26564944 -200959634 + MLT1L LTR MaLR 120 587 -28 362 269 71 50 chr3 26565418 26565600 -200958978 + HAL1 LINE L1 1365 1550 -957 689 185 23 6 chr3 26565628 26565801 -200958777 + CT-rich Low_complexity Low_complexity 2 177 0 426 311 44 11 chr3 26566647 26566827 -200957751 + L1M4 LINE L1 2276 2461 -3685 912 209 17 0 chr3 26567008 26567180 -200957398 - MER20 DNA MER1_type -1 218 44 290 250 12 0 chr3 26567195 26567275 -200957303 + L1MC4a LINE L1 5851 5931 -1877 235 255 34 67 chr3 26567701 26567850 -200956728 + L1MC/D LINE L1 5678 5821 -1987 797 244 42 9 chr3 26567856 26568073 -200956505 + MER58A DNA MER1_type 1 224 0 270 234 188 73 chr3 26568093 26568311 -200956267 - MER20B DNA MER1_type -22 761 519 278 316 115 7 chr3 26568803 26568942 -200955636 - MER20B DNA MER1_type -582 201 48 1688 211 75 56 chr3 26569583 26570103 -200954475 - MER34 LTR ERV1 0 542 13 1807 143 47 7 chr3 26570136 26570436 -200954142 - AluJb SINE Alu 0 312 1 202 315 0 0 chr3 26571558 26571612 -200952966 + CT-rich Low_complexity Low_complexity 4 57 0 307 275 47 31 chr3 26572869 26573062 -200951516 - L1ME4a LINE L1 -237 5884 5689 1047 308 50 8 chr3 26573075 26573435 -200951143 - L2 LINE L2 0 3313 2939 22 0 0 0 chr3 26574152 26574174 -200950404 + AT_rich Low_complexity Low_complexity 1 22 0 252 306 35 35 chr3 26574482 26574652 -200949926 + L2 LINE L2 2785 2954 -360 324 59 24 47 chr3 26574879 26574964 -200949614 + (TA)n Simple_repeat Simple_repeat 2 84 0 21 0 0 0 chr3 26576332 26576353 -200948225 + AT_rich Low_complexity Low_complexity 1 21 0 191 315 0 0 chr3 26576518 26576576 -200948002 - MIR SINE MIR -63 145 97 615 345 97 50 chr3 26576739 26577546 -200947032 + L2 LINE L2 1932 2776 -538 226 318 139 35 chr3 26577671 26577844 -200946734 + L2 LINE L2 3119 3309 -4 259 310 43 26 chr3 26577847 26577963 -200946615 - MIR SINE MIR -96 166 49 26 50 0 0 chr3 26577963 26578003 -200946575 + AT_rich Low_complexity Low_complexity 1 40 0 42187 37 23 0 chr3 26578095 26584110 -200940468 - L1PA2 LINE L1 -2 6153 1 312 207 35 11 chr3 26584957 26585044 -200939534 - MER53 DNA DNA -97 92 4 610 325 109 32 chr3 26585536 26585847 -200938731 - MLT1J1 LTR MaLR -110 336 2 2243 103 3 3 chr3 26586844 26587145 -200937433 + AluSc SINE Alu 1 301 -8 947 244 29 22 chr3 26588672 26588987 -200935591 + L1ME3A LINE L1 4790 5106 -1040 371 287 106 51 chr3 26589055 26589348 -200935230 + L1ME3A LINE L1 5323 5631 -539 369 284 98 5 chr3 26589393 26589587 -200934991 + L1ME3A LINE L1 5945 6156 -14 368 345 88 5 chr3 26589782 26589976 -200934602 + MIR SINE MIR 37 246 -16 195 222 0 0 chr3 26590135 26590180 -200934398 + (TAA)n Simple_repeat Simple_repeat 1 45 0 917 270 66 38 chr3 26590267 26590663 -200933915 - MLT1I LTR MaLR -2 407 1 1915 120 24 14 chr3 26590865 26591157 -200933421 - AluSx SINE Alu -17 295 1 28 29 0 0 chr3 26591413 26591448 -200933130 + AT_rich Low_complexity Low_complexity 1 35 0 320 202 27 32 chr3 26592087 26592206 -200932372 + L1ME LINE L1 5426 5545 -621 195 354 46 0 chr3 26592221 26592286 -200932292 + L3 LINE CR1 1038 1105 -472 431 309 70 45 chr3 26592473 26592716 -200931862 + L3 LINE CR1 1130 1378 -199 441 218 27 0 chr3 26592718 26592828 -200931750 + L1MA4 LINE L1 6188 6300 0 260 326 106 28 chr3 26594854 26594995 -200929583 + MIR SINE MIR 61 212 -50 654 202 12 152 chr3 26596266 26596509 -200928069 + MIR SINE MIR 30 237 -25 904 238 58 0 chr3 26596610 26596816 -200927762 - MLT1E3 LTR MaLR 0 624 407 1715 193 3 7 chr3 26597113 26597414 -200927164 - AluJo SINE Alu -12 300 1 552 352 38 0 chr3 26597416 26597626 -200926952 + MIR SINE MIR 45 262 0 251 259 6 17 chr3 26597830 26597958 -200926620 + CT-rich Low_complexity Low_complexity 1 126 0 205 183 50 0 chr3 26599558 26599618 -200924960 + (TA)n Simple_repeat Simple_repeat 1 63 0 201 74 0 0 chr3 26599803 26599830 -200924748 + (A)n Simple_repeat Simple_repeat 1 27 0 255 290 151 43 chr3 26600317 26600503 -200924075 + MIR SINE MIR 52 257 -5 363 186 0 0 chr3 26601404 26601463 -200923115 - L2 LINE L2 0 3313 3255 261 57 0 0 chr3 26601961 26601996 -200922582 + (GA)n Simple_repeat Simple_repeat 1 35 0 22 35 0 0 chr3 26602464 26602493 -200922085 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 26602824 26602845 -200921733 + AT_rich Low_complexity Low_complexity 1 21 0 203 138 0 0 chr3 26604137 26604166 -200920412 + (GGAGAA)n Simple_repeat Simple_repeat 3 31 0 339 391 19 6 chr3 26604758 26604919 -200919659 + MIR3 SINE MIR 17 179 -29 254 280 21 0 chr3 26604968 26605061 -200919517 + L1MC4 LINE L1 6611 6705 -1337 278 232 293 0 chr3 26605639 26605738 -200918840 - L2 LINE L2 -15 3298 3171 418 308 63 0 chr3 26606130 26606273 -200918305 + MIR SINE MIR 110 261 -1 216 0 0 0 chr3 26607716 26607740 -200916838 + (A)n Simple_repeat Simple_repeat 1 24 0 316 283 10 20 chr3 26608625 26608724 -200915854 - MER5A DNA MER1_type -83 106 9 293 315 39 24 chr3 26609530 26609657 -200914921 - MER103 DNA DNA -2 164 36 215 204 0 41 chr3 26610030 26610079 -200914499 + (TATATG)n Simple_repeat Simple_repeat 3 49 0 351 0 0 0 chr3 26610846 26610885 -200913693 + (TA)n Simple_repeat Simple_repeat 1 39 0 255 282 76 32 chr3 26612530 26612807 -200911771 - L1M4 LINE L1 -1528 4618 4330 259 345 43 9 chr3 26613188 26613304 -200911274 + MIR SINE MIR 33 152 -56 284 275 0 0 chr3 26614183 26614252 -200910326 - MIR3 SINE MIR -4 204 136 258 323 0 0 chr3 26614334 26614399 -200910179 + MIR3 SINE MIR 112 176 -32 13496 204 23 19 chr3 26614834 26619248 -200905330 + L1PA16 LINE L1 709 5111 -1758 273 29 0 0 chr3 26619248 26619282 -200905296 + (CA)n Simple_repeat Simple_repeat 1 34 0 13496 204 23 19 chr3 26619282 26621041 -200903537 + L1PA16 LINE L1 5111 6862 -7 1199 179 18 14 chr3 26621042 26621265 -200903313 + MLT1B LTR MaLR 165 388 -2 244 333 49 14 chr3 26622177 26622321 -200902257 - MIR SINE MIR -11 251 103 22 35 0 0 chr3 26622431 26622460 -200902118 + AT_rich Low_complexity Low_complexity 1 29 0 653 243 50 30 chr3 26622649 26622851 -200901727 - MIR SINE MIR 0 262 57 417 297 87 48 chr3 26623040 26623174 -200901404 - L1ME LINE L1 -445 5702 5575 399 66 105 53 chr3 26623174 26623250 -200901328 + MADE1 DNA Mariner 1 80 0 417 297 87 48 chr3 26623250 26623523 -200901055 - L1ME LINE L1 -572 5575 5279 407 321 110 52 chr3 26623939 26624440 -200900138 - L1ME LINE L1 -5279 840 311 313 175 21 113 chr3 26624635 26624732 -200899846 + L1MC4 LINE L1 6620 6707 -1335 268 388 56 6 chr3 26625570 26625730 -200898848 - L2 LINE L2 -238 3034 2867 422 295 60 12 chr3 26625916 26626082 -200898496 - Charlie8 DNA MER1_type -2239 178 5 2744 3 0 3 chr3 26626680 26626984 -200897594 - AluY SINE Alu -8 303 1 302 311 141 23 chr3 26627470 26627647 -200896931 + MIR SINE MIR 18 215 -47 22 0 0 0 chr3 26629264 26629286 -200895292 + AT_rich Low_complexity Low_complexity 1 22 0 304 365 81 5 chr3 26629879 26630076 -200894502 - MIR SINE MIR 0 262 51 343 322 35 9 chr3 26630159 26630274 -200894304 - L2 LINE L2 -6 3266 3149 26 30 0 0 chr3 26630746 26630779 -200893799 + AT_rich Low_complexity Low_complexity 1 33 0 4496 113 35 0 chr3 26630780 26631121 -200893457 - L1PB1 LINE L1 -6 6145 5817 189 0 0 0 chr3 26631121 26631142 -200893436 + (TG)n Simple_repeat Simple_repeat 2 22 0 4496 113 35 0 chr3 26631142 26631488 -200893090 - L1PB1 LINE L1 -334 5817 5434 3515 209 29 7 chr3 26631488 26632344 -200892234 + L1PB1 LINE L1 4534 5406 -754 252 261 225 46 chr3 26633229 26633509 -200891069 + L3 LINE CR1 1070 1399 -178 216 322 85 34 chr3 26633992 26634110 -200890468 + L3 LINE CR1 1371 1494 -83 602 255 49 27 chr3 26636048 26636232 -200888346 - MIR SINE MIR -16 246 59 2443 51 0 10 chr3 26636647 26636958 -200887620 - AluY SINE Alu -3 308 1 3671 95 33 0 chr3 26637059 26637605 -200886973 - L1PA13 LINE L1 0 6163 5600 9941 168 15 27 chr3 26637605 26639541 -200885037 - L1PA13 LINE L1 -1146 5000 3088 417 299 103 60 chr3 26640951 26641135 -200883443 - MIR3 SINE MIR -11 197 6 835 181 30 35 chr3 26641438 26641637 -200882941 + L1MD3 LINE L1 7796 7993 -2 1192 142 22 13 chr3 26642464 26642689 -200881889 + L1MA9 LINE L1 6086 6312 0 335 256 178 0 chr3 26642751 26642841 -200881737 + MIR SINE MIR 48 153 -109 233 342 51 8 chr3 26642878 26642995 -200881583 + MIR SINE MIR 137 258 -4 324 188 79 14 chr3 26644339 26644427 -200880151 + MER5A DNA MER1_type 76 188 -1 270 218 11 35 chr3 26644876 26644963 -200879615 - L1MA10 LINE L1 -9 6325 6241 277 322 26 26 chr3 26645050 26645165 -200879413 - L2 LINE L2 -200 3072 2958 248 257 57 38 chr3 26646302 26646407 -200878171 + MIR3 SINE MIR 81 187 -21 450 316 6 6 chr3 26647361 26647532 -200877046 + GA-rich Low_complexity Low_complexity 2 172 0 21 0 0 0 chr3 26647674 26647695 -200876883 + AT_rich Low_complexity Low_complexity 1 21 0 2469 123 0 8 chr3 26647816 26648183 -200876395 - THE1B LTR MaLR 0 364 1 289 270 63 9 chr3 26648241 26648352 -200876226 - MIR SINE MIR -3 259 143 552 248 81 10 chr3 26648370 26648568 -200876010 + LTR50 LTR ERVL 9 220 -575 425 309 75 12 chr3 26648641 26648936 -200875642 + LTR33A LTR ERVL 291 523 0 440 269 10 0 chr3 26648942 26649046 -200875532 - MIR SINE MIR -111 151 47 188 286 13 78 chr3 26649357 26649434 -200875144 - L2 LINE L2 -67 3205 3134 275 279 47 0 chr3 26650366 26650452 -200874126 - MIR SINE MIR -71 191 102 45 79 0 0 chr3 26650484 26650585 -200873993 + AT_rich Low_complexity Low_complexity 1 101 0 407 200 0 9 chr3 26650857 26650962 -200873616 + (TA)n Simple_repeat Simple_repeat 1 104 0 2305 266 83 38 chr3 26651175 26652982 -200871596 + L1ME3A LINE L1 4266 6157 -13 235 327 55 42 chr3 26653055 26653272 -200871306 + HAL1 LINE L1 2245 2464 -43 315 410 36 7 chr3 26653328 26653467 -200871111 - L2 LINE L2 -9 3263 3121 238 239 11 11 chr3 26654260 26654348 -200870230 + GA-rich Low_complexity Low_complexity 3 90 0 447 286 94 54 chr3 26655626 26655829 -200868749 - MIR SINE MIR -31 231 21 243 0 0 0 chr3 26656776 26656803 -200867775 + (TA)n Simple_repeat Simple_repeat 1 27 0 225 248 178 0 chr3 26659058 26659159 -200865419 - MIR SINE MIR -71 191 73 1586 167 3 14 chr3 26659587 26659880 -200864698 + AluJb SINE Alu 1 290 -22 355 370 7 7 chr3 26659895 26660030 -200864548 - L2 LINE L2 -1 3312 3178 222 308 0 13 chr3 26660021 26660099 -200864479 - L2 LINE L2 -711 2603 2527 * 2808 139 12 10 chr3 26660367 26660849 -200863729 + L1PB4 LINE L1 5673 6155 -1 1663 171 134 0 chr3 26661024 26661345 -200863233 + MLT1A1 LTR MaLR 2 365 0 477 0 0 0 chr3 26661629 26661682 -200862896 + (TG)n Simple_repeat Simple_repeat 2 54 0 206 328 0 30 chr3 26663127 26663194 -200861384 + L2 LINE L2 3249 3313 0 200 280 40 67 chr3 26663813 26663888 -200860690 - L2 LINE L2 -12 3260 3188 21 36 0 0 chr3 26663909 26663937 -200860641 + AT_rich Low_complexity Low_complexity 1 28 0 418 306 102 25 chr3 26665468 26665664 -200858914 - MIR SINE MIR -7 255 45 5479 138 31 28 chr3 26665978 26667300 -200857278 - L1MA8 LINE L1 -34 6257 4933 204 97 0 0 chr3 26667429 26667460 -200857118 + (TC)n Simple_repeat Simple_repeat 2 32 0 312 276 70 65 chr3 26668068 26668186 -200856392 - L1ME LINE L1 -5852 218 97 2363 118 36 16 chr3 26668186 26668551 -200856027 + THE1C LTR MaLR 3 374 -1 312 276 70 65 chr3 26668551 26668646 -200855932 - L1ME LINE L1 -5973 97 4 6822 53 23 5 chr3 26669154 26670431 -200854147 - L1PA6 LINE L1 -3 6151 4839 1697 140 81 0 chr3 26670440 26670725 -200853853 - MER2 DNA MER2_type -37 308 1 425 333 102 20 chr3 26670928 26671388 -200853190 + L1ME LINE L1 5318 5815 -347 1143 286 67 30 chr3 26671542 26672241 -200852337 + L1M4 LINE L1 4650 5374 -772 22 0 0 0 chr3 26672370 26672392 -200852186 + AT_rich Low_complexity Low_complexity 1 22 0 9120 115 21 23 chr3 26672609 26673409 -200851169 + Tigger1 DNA MER2_type 1002 1802 -616 1718 169 33 3 chr3 26673409 26673710 -200850868 - AluJo SINE Alu -2 310 1 9120 115 21 23 chr3 26673710 26674135 -200850443 + Tigger1 DNA MER2_type 1802 2226 -192 2292 97 10 0 chr3 26674135 26674445 -200850133 - AluSp SINE Alu 0 313 1 9120 115 21 23 chr3 26674445 26674638 -200849940 + Tigger1 DNA MER2_type 2226 2418 0 285 98 0 0 chr3 26674785 26674826 -200849752 + (CA)n Simple_repeat Simple_repeat 2 42 0 368 313 119 51 chr3 26675160 26675772 -200848806 + L2 LINE L2 2636 3312 -1 207 295 77 13 chr3 26675996 26676074 -200848504 + L3b LINE CR1 1296 1378 -205 22 35 0 0 chr3 26676504 26676533 -200848045 + AT_rich Low_complexity Low_complexity 1 29 0 1106 110 0 0 chr3 26676923 26677078 -200847500 - AluSg/x SINE Alu -11 301 147 28 29 0 0 chr3 26677537 26677572 -200847006 + AT_rich Low_complexity Low_complexity 1 35 0 30 27 0 0 chr3 26678325 26678362 -200846216 + AT_rich Low_complexity Low_complexity 1 37 0 365 300 57 76 chr3 26679036 26679246 -200845332 - MIR SINE MIR -29 233 28 362 177 25 13 chr3 26679420 26679499 -200845079 + L1ME3A LINE L1 6086 6165 -5 468 0 0 0 chr3 26679680 26679732 -200844846 + (TG)n Simple_repeat Simple_repeat 2 53 0 196 274 0 0 chr3 26679739 26679790 -200844788 - MIR3 SINE MIR -4 204 154 2219 109 36 20 chr3 26679806 26680164 -200844414 + THE1B LTR MaLR 1 364 0 182 369 106 19 chr3 26680423 26680583 -200843995 - MIR SINE MIR -15 247 74 21 0 0 0 chr3 26681672 26681693 -200842885 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 26683096 26683117 -200841461 + AT_rich Low_complexity Low_complexity 1 21 0 180 345 216 7 chr3 26734831 26734979 -200789599 + MIR SINE MIR 10 188 -74 279 133 0 0 chr3 26734980 26735025 -200789553 + (TA)n Simple_repeat Simple_repeat 2 46 0 24 0 0 0 chr3 26735038 26735062 -200789516 + AT_rich Low_complexity Low_complexity 1 24 0 1648 263 107 28 chr3 26735124 26735695 -200788883 + MLT2F LTR ERVL 1 616 -47 231 146 0 0 chr3 26736004 26736045 -200788533 + (TCCC)n Simple_repeat Simple_repeat 2 42 0 252 0 0 0 chr3 26737127 26737155 -200787423 + (TA)n Simple_repeat Simple_repeat 2 29 0 3096 171 54 0 chr3 26737156 26737694 -200786884 - MER6A DNA MER2_type 0 605 39 602 171 39 8 chr3 26737958 26738087 -200786491 - L1 LINE L1 -2192 3954 3822 2634 32 3 0 chr3 26738171 26738482 -200786096 - L1PA6 LINE L1 -234 5920 5609 6240 52 4 0 chr3 26739154 26739925 -200784653 - L1PA6 LINE L1 -1 6153 5380 456 309 195 15 chr3 26739925 26740268 -200784310 - L2 LINE L2 -1518 1796 1392 3879 241 65 10 chr3 26740274 26741042 -200783536 + L1PA16 LINE L1 5351 6160 -6 225 0 0 0 chr3 26741571 26741596 -200782982 + (CA)n Simple_repeat Simple_repeat 2 26 0 1386 274 104 10 chr3 26741759 26742172 -200782406 + MLT1G LTR MaLR 135 586 -4 1450 169 44 34 chr3 26742259 26742554 -200782024 - AluJb SINE Alu -14 298 1 512 210 178 25 chr3 26743369 26743650 -200780928 + L1MC5 LINE L1 7538 7861 -100 278 280 72 0 chr3 26743941 26744066 -200780512 + L1ME4a LINE L1 5926 6059 -62 1749 237 133 18 chr3 26745071 26745560 -200779018 + MLT1E LTR MaLR 32 576 -17 533 322 7 56 chr3 26745971 26746230 -200778348 - MIR SINE MIR -6 256 6 454 225 248 0 chr3 26746517 26746646 -200777932 + MER5A DNA MER1_type 28 188 -1 30 0 0 0 chr3 26746705 26746735 -200777843 + AT_rich Low_complexity Low_complexity 1 30 0 722 238 62 66 chr3 26747704 26748100 -200776478 - MLT2B3 LTR ERVL -169 322 71 201 299 75 15 chr3 26748169 26748236 -200776342 - L2 LINE L2 -167 3105 3035 207 258 194 0 chr3 26748296 26748389 -200776189 - MIR SINE MIR -60 202 92 329 260 115 0 chr3 26749355 26749451 -200775127 + MIR SINE MIR 57 163 -99 201 250 28 14 chr3 26749440 26749512 -200775066 - MIR SINE MIR -2 260 188 * 487 311 49 0 chr3 26749704 26749868 -200774710 + MIR SINE MIR 91 262 0 222 37 0 0 chr3 26750929 26750956 -200773622 + (CAGGC)n Simple_repeat Simple_repeat 4 30 0 192 179 0 0 chr3 26751085 26751124 -200773454 + (CAAAC)n Simple_repeat Simple_repeat 2 40 0 2473 53 0 3 chr3 26751168 26751470 -200773108 - AluY SINE Alu -10 301 1 2066 149 15 27 chr3 26751894 26752296 -200772282 - L1MB8 LINE L1 0 6178 5782 286 154 0 0 chr3 26752297 26752342 -200772236 - L1MB8 LINE L1 -668 5691 5644 2415 121 44 37 chr3 26752342 26752773 -200771805 - MER57B LTR ERV1 0 434 1 1489 87 121 4 chr3 26752781 26753012 -200771566 - MER57B-int LTR ERV1 -8 7529 7272 726 138 24 0 chr3 26753012 26753135 -200771443 - LTR54B LTR ERV1 -370 128 3 16082 171 59 52 chr3 26753135 26757307 -200767271 - MER57B-int LTR ERV1 -487 7329 3129 3219 144 53 13 chr3 26757345 26757895 -200766683 - MER57B-int LTR ERV1 -5087 859 288 * 3537 157 43 15 chr3 26757889 26758546 -200766032 - MER57B-int LTR ERV1 -6862 675 1 2667 123 9 2 chr3 26758558 26758980 -200765598 - MER57B LTR ERV1 -9 425 1 692 152 33 2 chr3 26758980 26759113 -200765465 - L1MB8 LINE L1 -524 5650 5516 2190 106 0 3 chr3 26759224 26759516 -200765062 + AluSc SINE Alu 1 291 -18 337 343 28 33 chr3 26759736 26759949 -200764629 + L2 LINE L2 2812 3023 -249 232 284 125 0 chr3 26760092 26760180 -200764398 - MIR3 SINE MIR -23 185 87 504 93 0 0 chr3 26760596 26760671 -200763907 + (TTCC)n Simple_repeat Simple_repeat 2 76 0 744 177 20 41 chr3 26760680 26760827 -200763751 - AluJb SINE Alu -35 277 134 202 235 39 0 chr3 26761477 26761528 -200763050 - L2 LINE L2 -20 3293 3241 1460 323 116 8 chr3 26761642 26762411 -200762167 - L2 LINE L2 -344 2970 2119 389 336 7 15 chr3 26762762 26762899 -200761679 - MIR SINE MIR -6 256 121 289 256 60 98 chr3 26763228 26763361 -200761217 - L2 LINE L2 0 3272 3145 198 264 97 14 chr3 26763402 26763474 -200761104 - L2 LINE L2 0 3313 3236 345 78 0 68 chr3 26763477 26763580 -200760998 + (TTA)n Simple_repeat Simple_repeat 3 98 0 2411 41 3 3 chr3 26764331 26764626 -200759952 - AluY SINE Alu -16 295 1 407 171 21 7 chr3 26764695 26764835 -200759743 + (TA)n Simple_repeat Simple_repeat 1 142 0 2214 88 18 0 chr3 26764835 26765119 -200759459 - AluSq SINE Alu -24 289 1 510 257 69 30 chr3 26765468 26765670 -200758908 - MER63A DNA MER1_type 0 210 1 287 225 45 0 chr3 26765945 26766034 -200758544 - HERVL40 LTR ERVL -490 2547 2455 712 239 90 106 chr3 26766197 26766498 -200758080 - HERVL40 LTR ERVL -695 4659 2047 418 218 7 106 chr3 26766500 26766585 -200757993 + HERVL40 LTR ERVL 4421 4488 -1042 2113 118 38 0 chr3 26766585 26766873 -200757705 + AluSx SINE Alu 1 299 -13 418 218 7 106 chr3 26766873 26766929 -200757649 + HERVL40 LTR ERVL 4488 4548 -982 336 24 0 0 chr3 26766929 26766970 -200757608 + (TTTTA)n Simple_repeat Simple_repeat 1 41 0 848 191 0 7 chr3 26766970 26767117 -200757461 - FRAM SINE Alu -30 146 1 5974 237 64 20 chr3 26767134 26768470 -200756108 - HERVL40 LTR ERVL -1162 4368 2935 1608 169 48 7 chr3 26768470 26768742 -200755836 + AluJo SINE Alu 1 283 -29 5974 237 64 20 chr3 26768742 26769175 -200755403 - HERVL40 LTR ERVL -2595 2935 2522 348 222 51 68 chr3 26769328 26769445 -200755133 - HERVL40 LTR ERVL -4103 1427 1313 1577 91 10 0 chr3 26769824 26770033 -200754545 - AluSp SINE Alu -16 297 87 324 70 0 0 chr3 26770033 26770076 -200754502 - AluSp SINE Alu -259 43 1 1088 253 16 30 chr3 26770105 26770409 -200754169 - HERVL40 LTR ERVL -4664 866 567 1001 246 55 80 chr3 26770460 26770900 -200753678 - HERVL40 LTR ERVL -4960 570 142 37 0 0 0 chr3 26771407 26771444 -200753134 + AT_rich Low_complexity Low_complexity 1 37 0 720 161 0 73 chr3 26771444 26771581 -200752997 - FLAM_C SINE Alu -16 127 1 23 54 0 0 chr3 26771645 26771682 -200752896 + AT_rich Low_complexity Low_complexity 1 37 0 1209 126 117 0 chr3 26772070 26772276 -200752302 - MER30 DNA MER1_type 0 230 1 246 156 0 0 chr3 26772302 26772347 -200752231 + (TA)n Simple_repeat Simple_repeat 2 46 0 2035 132 7 13 chr3 26772417 26772727 -200751851 - AluSx SINE Alu -4 308 1 1072 90 0 7 chr3 26773122 26773266 -200751312 - AluJo/FRAM SINE Alu -3 309 167 581 163 10 0 chr3 26773266 26773364 -200751214 - AluJ/FLAM SINE Alu -213 99 1 2298 107 0 0 chr3 26774588 26774886 -200749692 - AluSq SINE Alu -15 298 1 22 0 0 0 chr3 26774890 26774912 -200749666 + AT_rich Low_complexity Low_complexity 1 22 0 2680 152 29 0 chr3 26775821 26776275 -200748303 - MLT1C LTR MaLR 0 467 1 766 173 155 47 chr3 26776455 26776525 -200748053 - MER33 DNA MER1_type -2263 322 261 2166 146 0 0 chr3 26776525 26776834 -200747744 + AluJo SINE Alu 1 309 -3 766 173 155 47 chr3 26776834 26777041 -200747537 - MER33 DNA MER1_type -2324 261 15 453 19 0 0 chr3 26777753 26777807 -200746771 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 2078 126 0 7 chr3 26779272 26779597 -200744981 + AluSx SINE Alu 1 323 0 234 239 0 0 chr3 26779858 26779904 -200744674 + (CA)n Simple_repeat Simple_repeat 2 47 0 2134 99 28 0 chr3 26780661 26780944 -200743634 - AluSg SINE Alu -16 294 4 2001 126 17 3 chr3 26782399 26782692 -200741886 - AluSx SINE Alu -15 297 1 3435 53 47 53 chr3 26783183 26783711 -200740867 + LTR17 LTR ERV1 256 780 0 25295 84 42 48 chr3 26783711 26788027 -200736551 + HERV17 LTR ERV1 1 4286 -4340 459 227 94 35 chr3 26788101 26788304 -200736274 - L1M4 LINE L1 -1538 4608 4394 3329 226 112 13 chr3 26788343 26789737 -200734841 - L1ME1 LINE L1 -6 6160 4631 2525 62 0 3 chr3 26789741 26790049 -200734529 + AluY SINE Alu 1 307 -4 10466 24 8 0 chr3 26790213 26791945 -200732633 - L1PA4 LINE L1 -323 5832 4091 757 148 0 0 chr3 26791946 26792068 -200732510 + L1 LINE L1 4086 4207 -1939 612 281 68 29 chr3 26792110 26792494 -200732084 + L1MEc LINE L1 2093 2491 -3905 348 258 0 0 chr3 26792687 26792776 -200731802 - L1MC/D LINE L1 -583 5776 5688 22 35 0 0 chr3 26793161 26793190 -200731388 + AT_rich Low_complexity Low_complexity 1 29 0 1428 173 69 36 chr3 26793203 26793480 -200731098 - AluJo SINE Alu -21 291 6 546 287 99 18 chr3 26793750 26794133 -200730445 + L1PA12 LINE L1 2 415 -7166 358 297 150 60 chr3 26794222 26794555 -200730023 + L1M2 LINE L1 469 831 -6018 239 321 57 30 chr3 26794622 26794887 -200729691 + L1M2 LINE L1 796 1067 -5782 573 191 128 0 chr3 26795106 26795247 -200729331 + L1PA16 LINE L1 6005 6163 -3 * 865 289 142 4 chr3 26795243 26795700 -200728878 + L1MC4a LINE L1 5474 5993 -1815 21 0 0 0 chr3 26795791 26795812 -200728766 + AT_rich Low_complexity Low_complexity 1 21 0 1462 311 180 22 chr3 26795818 26796945 -200727633 + L2 LINE L2 1782 3084 -229 338 381 12 12 chr3 26797346 26797506 -200727072 - MIR3 SINE MIR -20 188 29 219 36 0 0 chr3 26799950 26799978 -200724600 + (CTG)n Simple_repeat Simple_repeat 1 28 0 981 199 10 0 chr3 26800880 26801081 -200723497 - MER3 DNA MER1_type -1 208 6 247 286 174 10 chr3 26801467 26801565 -200723013 + L2 LINE L2 3180 3293 -20 221 306 94 12 chr3 26801591 26801676 -200722902 - MIR SINE MIR -71 191 100 1748 188 0 0 chr3 26801701 26801983 -200722595 - AluJo SINE Alu -30 282 1 342 242 117 37 chr3 26802044 26802304 -200722274 - MLT1H LTR MaLR -249 300 1 4771 98 8 22 chr3 26802369 26803012 -200721566 - MER51A LTR ERV1 0 634 1 1589 248 75 100 chr3 26804288 26804890 -200719688 - MLT1G LTR MaLR 0 590 9 524 289 34 0 chr3 26805253 26805461 -200719117 + L1M4 LINE L1 4408 4622 -1524 363 218 0 170 chr3 26805828 26806023 -200718555 - L2 LINE L2 0 3313 3161 1591 145 76 0 chr3 26806023 26806313 -200718265 - L1MA8 LINE L1 -4 6287 5976 363 218 0 170 chr3 26806313 26806346 -200718232 - L2 LINE L2 -152 3161 3124 388 226 96 17 chr3 26807002 26807117 -200717461 - MLT2E LTR ERVL -503 125 1 190 246 0 77 chr3 26807446 26807511 -200717067 - L2 LINE L2 -10 3262 3203 1441 276 32 29 chr3 26807515 26807925 -200716653 - LTR16A LTR ERVL 0 450 40 922 167 75 6 chr3 26808428 26808602 -200715976 - MER5A DNA MER1_type 0 189 4 1313 204 0 9 chr3 26808614 26808839 -200715739 - MER58A DNA MER1_type -1 223 1 217 271 167 0 chr3 26809792 26809888 -200714690 - L2 LINE L2 -4 3309 3198 356 290 0 28 chr3 26810190 26810297 -200714281 - MER5A DNA MER1_type -85 104 1 689 206 144 6 chr3 26810491 26810651 -200713927 - MER5A DNA MER1_type 0 189 8 2029 148 0 0 chr3 26812005 26812303 -200712275 + AluJb SINE Alu 1 298 -14 823 201 0 14 chr3 26812347 26812491 -200712087 + FLAM_C SINE Alu 2 143 0 392 288 90 61 chr3 26812555 26812833 -200711745 + L1ME LINE L1 5379 5664 -457 2057 134 7 0 chr3 26812863 26813155 -200711423 + AluSx SINE Alu 3 296 -16 21 36 0 0 chr3 26813565 26813593 -200710985 + AT_rich Low_complexity Low_complexity 1 28 0 2346 87 3 3 chr3 26813881 26814179 -200710399 + AluSq SINE Alu 1 298 -15 2263 109 3 0 chr3 26814467 26814769 -200709809 + AluSx SINE Alu 1 303 -9 30 0 0 0 chr3 26815046 26815076 -200709502 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr3 26815130 26815164 -200709414 + AT_rich Low_complexity Low_complexity 1 34 0 767 256 33 47 chr3 26815377 26815592 -200708986 + MIR SINE MIR 13 224 -38 1134 234 117 81 chr3 26815783 26815939 -200708639 - MLT1D LTR MaLR 0 505 356 861 154 0 22 chr3 26815939 26816075 -200708503 - FLAM_C SINE Alu 0 133 1 1134 234 117 81 chr3 26816075 26816387 -200708191 - MLT1D LTR MaLR -149 356 20 309 212 24 24 chr3 26816425 26816510 -200708068 - Charlie8 DNA MER1_type -2248 169 85 741 222 34 28 chr3 26816663 26816839 -200707739 + AluJo SINE Alu 124 300 -12 4818 172 44 28 chr3 26817554 26817608 -200706970 + L1 LINE L1 4227 4279 -1867 2019 135 0 26 chr3 26817608 26817912 -200706666 + AluSx SINE Alu 1 296 -16 4818 172 44 28 chr3 26817912 26818905 -200705673 + L1 LINE L1 4279 5291 -855 301 262 167 79 chr3 26819351 26819668 -200704910 + L1ME LINE L1 5384 5728 -393 2193 99 3 0 chr3 26819820 26820232 -200704346 + AluSq SINE Alu 1 413 0 25 31 0 0 chr3 26820397 26820429 -200704149 + AT_rich Low_complexity Low_complexity 1 32 0 17661 152 19 81 chr3 26820525 26822849 -200701729 + L1 LINE L1 12 2477 -5088 2107 136 13 0 chr3 26822849 26823157 -200701421 + AluSx SINE Alu 1 312 0 17661 152 19 81 chr3 26823157 26823399 -200701179 + L1 LINE L1 2477 2732 -4833 783 168 0 0 chr3 26823399 26823506 -200701072 + FLAM_C SINE Alu 2 108 -35 17661 152 19 81 chr3 26823506 26824412 -200700166 + L1 LINE L1 2732 3371 -4194 4025 244 58 45 chr3 26824409 26825531 -200699047 + L1 LINE L1 5219 6355 -1210 * 1424 151 78 20 chr3 26825534 26825779 -200698799 - AluJo SINE Alu -51 261 3 191 35 0 35 chr3 26826088 26826117 -200698461 + (TAA)n Simple_repeat Simple_repeat 1 28 0 408 289 181 10 chr3 26826121 26826325 -200698253 - MIR SINE MIR -21 241 3 1667 186 10 7 chr3 26826360 26826651 -200697927 + AluJo SINE Alu 1 292 -20 23 0 0 0 chr3 26826651 26826674 -200697904 + AT_rich Low_complexity Low_complexity 1 23 0 979 120 0 0 chr3 26827190 26827323 -200697255 + AluSq/x SINE Alu 1 133 -179 1448 117 0 28 chr3 26827327 26827540 -200697038 + AluSg/x SINE Alu 83 289 -21 2195 94 3 10 chr3 26827785 26828075 -200696503 + AluSx SINE Alu 1 290 -22 183 42 0 0 chr3 26828075 26828099 -200696479 + (TTAA)n Simple_repeat Simple_repeat 3 26 0 756 178 16 8 chr3 26828642 26828771 -200695807 + AluJb SINE Alu 2 131 -181 23 33 0 0 chr3 26828771 26828801 -200695777 + AT_rich Low_complexity Low_complexity 1 30 0 2073 122 3 16 chr3 26830246 26830558 -200694020 + AluSx SINE Alu 2 309 -3 2053 117 3 31 chr3 26830741 26831058 -200693520 - AluSq SINE Alu -5 308 1 678 242 0 0 chr3 26832488 26832620 -200691958 + FRAM SINE Alu 38 169 -7 2274 113 0 0 chr3 26833435 26833735 -200690843 + AluSq SINE Alu 2 301 -12 478 240 0 0 chr3 26833738 26833834 -200690744 + MER34 LTR ERV1 1 96 -446 281 295 126 63 chr3 26833844 26834146 -200690432 + HAL1 LINE L1 305 625 -1882 753 233 127 21 chr3 26834189 26834425 -200690153 + MIR SINE MIR 2 262 0 420 292 135 65 chr3 26834434 26834536 -200690042 + HAL1 LINE L1 659 752 -1755 2088 116 7 7 chr3 26834536 26834838 -200689740 + AluSq SINE Alu 1 302 -11 420 292 135 65 chr3 26834838 26834907 -200689671 + HAL1 LINE L1 752 815 -1692 1517 179 0 56 chr3 26834907 26835226 -200689352 - AluJb SINE Alu -11 301 1 420 292 135 65 chr3 26835226 26835467 -200689111 + HAL1 LINE L1 815 1101 -1406 793 156 16 8 chr3 26835505 26835633 -200688945 + AluJo SINE Alu 6 134 -178 1911 219 60 99 chr3 26835639 26835767 -200688811 - L1MC4 LINE L1 -826 7216 7084 2286 98 0 0 chr3 26835767 26836062 -200688516 - AluSg SINE Alu -15 295 1 1911 219 60 99 chr3 26836062 26836352 -200688226 - L1MC4 LINE L1 -958 7084 6784 657 37 0 0 chr3 26836352 26836434 -200688144 + L1PA3 LINE L1 6073 6154 -1 1911 219 60 99 chr3 26836434 26836514 -200688064 - L1MC4 LINE L1 -1258 6784 6702 2370 67 10 0 chr3 26836514 26836811 -200687767 + AluY SINE Alu 1 300 -11 1911 219 60 99 chr3 26836811 26837095 -200687483 - L1MC4 LINE L1 -1340 6702 6463 2425 61 10 0 chr3 26837914 26838208 -200686370 - AluY SINE Alu -14 297 1 2315 75 14 0 chr3 26838211 26838506 -200686072 - AluSp SINE Alu -12 301 3 523 214 0 0 chr3 26838508 26838597 -200685981 - AluJb SINE Alu -16 296 208 213 159 65 47 chr3 26839447 26839554 -200685024 + (TATAA)n Simple_repeat Simple_repeat 2 110 0 434 307 171 0 chr3 26839569 26839849 -200684729 + L1M4 LINE L1 3603 3930 -2216 2023 120 24 0 chr3 26840002 26840293 -200684285 - AluSx SINE Alu -14 298 1 979 146 0 0 chr3 26840756 26840886 -200683692 - FLAM_C SINE Alu -2 131 2 2183 102 3 16 chr3 26840974 26841279 -200683299 + AluSg SINE Alu 4 304 -6 549 303 83 21 chr3 26841431 26841672 -200682906 + MIR SINE MIR 3 258 -4 26 64 0 0 chr3 26841774 26841821 -200682757 + AT_rich Low_complexity Low_complexity 1 47 0 1518 184 23 40 chr3 26842154 26842398 -200682180 - AluJo SINE Alu -13 299 59 1747 131 6 92 chr3 26842398 26842733 -200681845 + AluSq SINE Alu 2 307 -6 1518 184 23 40 chr3 26842733 26842792 -200681786 - AluJo SINE Alu -253 59 1 358 275 64 9 chr3 26843301 26843410 -200681168 - L2 LINE L2 -4 3309 3195 211 316 74 42 chr3 26844275 26844370 -200680208 + L2 LINE L2 3137 3234 -38 621 176 33 4 chr3 26845846 26846098 -200678480 + CT-rich Low_complexity Low_complexity 1 259 0 2223 95 7 0 chr3 26846461 26846755 -200677823 - AluSx SINE Alu -16 296 1 2377 88 3 0 chr3 26846916 26847221 -200677357 + AluSc SINE Alu 1 306 -3 846 207 62 2 chr3 26847308 26847535 -200677043 + AluJb SINE Alu 3 294 -18 * 1390 179 4 4 chr3 26847534 26847768 -200676810 + AluJo SINE Alu 68 301 -11 2171 115 0 0 chr3 26847771 26848101 -200676477 + AluSq SINE Alu 1 330 0 1767 116 40 0 chr3 26848120 26848370 -200676208 + AluSx SINE Alu 41 300 -12 646 229 42 24 chr3 26849374 26849540 -200675038 + L1ME2 LINE L1 5995 6163 -1 301 228 53 18 chr3 26849654 26849768 -200674810 + L1MC4 LINE L1 7924 8041 -1 263 337 66 39 chr3 26849809 26849990 -200674588 + L2 LINE L2 2562 2747 -567 1892 134 17 0 chr3 26850094 26850386 -200674192 - AluSx SINE Alu -15 297 1 2598 51 0 6 chr3 26850551 26850864 -200673714 - AluY SINE Alu 0 311 1 286 301 59 48 chr3 26851988 26852174 -200672404 + L2 LINE L2 2716 2903 -411 204 235 20 0 chr3 26852490 26852541 -200672037 + L2 LINE L2 3261 3312 -1 191 200 0 0 chr3 26852739 26852774 -200671804 - L2 LINE L2 -2 3311 3277 2277 286 162 17 chr3 26852774 26853022 -200671556 - L2 LINE L2 -1298 2016 1806 1856 149 0 3 chr3 26853022 26853304 -200671274 + AluSx SINE Alu 1 281 -31 2277 286 162 17 chr3 26853304 26854262 -200670316 - L2 LINE L2 -1508 1806 634 228 35 0 0 chr3 26854462 26854491 -200670087 + (TCCA)n Simple_repeat Simple_repeat 3 31 0 603 222 176 0 chr3 26856110 26856263 -200668315 - MER5A DNA MER1_type -1 188 9 3032 69 64 7 chr3 26856320 26856698 -200667880 + MLT2A1 LTR ERVL 1 407 -37 498 33 0 0 chr3 26856698 26856758 -200667820 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 3032 69 64 7 chr3 26856758 26856799 -200667779 + MLT2A1 LTR ERVL 407 444 0 11230 80 6 16 chr3 26856802 26857359 -200667219 + THE1A-int LTR MaLR 5 566 -1014 225 0 0 0 chr3 26857359 26857384 -200667194 + (TTA)n Simple_repeat Simple_repeat 3 27 0 5136 40 2 2 chr3 26857384 26858006 -200666572 - L1PA5 LINE L1 -18 6136 5515 11230 80 6 16 chr3 26858006 26859040 -200665538 + THE1A-int LTR MaLR 564 1580 0 2613 96 6 0 chr3 26859040 26859393 -200665185 + THE1A LTR MaLR 1 355 0 779 141 147 0 chr3 26859487 26859671 -200664907 - L1MC3 LINE L1 0 7785 7575 28 0 0 0 chr3 26859673 26859701 -200664877 + AT_rich Low_complexity Low_complexity 1 28 0 278 310 87 55 chr3 26859905 26860250 -200664328 + L2 LINE L2 1250 1605 -1709 879 83 15 8 chr3 26860324 26860457 -200664121 - L1PB2 LINE L1 0 6867 6734 40552 36 21 1 chr3 26860457 26866486 -200658092 - L1PA2 LINE L1 -1 6154 1 11534 186 23 27 chr3 26866483 26866896 -200657682 - L1PB2 LINE L1 -116 6751 6338 * 7388 42 0 0 chr3 26866896 26868521 -200656057 - L1PA5 LINE L1 -4 6150 4527 11534 186 23 27 chr3 26868521 26871803 -200652775 - L1PB2 LINE L1 -529 6338 3078 23 33 0 0 chr3 26871803 26871833 -200652745 + AT_rich Low_complexity Low_complexity 1 30 0 6022 124 69 9 chr3 26871878 26873005 -200651573 - L1PB2 LINE L1 -3767 3095 1969 462 164 90 16 chr3 26873005 26873025 -200651553 - L1MC3 LINE L1 -1930 5855 5838 1972 128 31 7 chr3 26873025 26873314 -200651264 - AluSx SINE Alu -16 296 1 462 164 90 16 chr3 26873314 26873415 -200651163 - L1MC3 LINE L1 -1947 5838 1138 224 283 11 0 chr3 26873421 26873513 -200651065 + (TTATA)n Simple_repeat Simple_repeat 1 93 0 2137 150 28 2 chr3 26873514 26873913 -200650665 - L1MA5A LINE L1 -3 6294 5886 294 73 0 0 chr3 26873916 26873957 -200650621 + (ATG)n Simple_repeat Simple_repeat 2 42 0 1529 224 14 0 chr3 26873974 26874255 -200650323 - AluJo SINE Alu -27 285 1 692 111 0 34 chr3 26874284 26874401 -200650177 - L1MA5A LINE L1 -403 5894 5782 16077 111 41 19 chr3 26874431 26877555 -200647023 + L1PA7 LINE L1 751 4005 -2456 4651 83 0 3 chr3 26877556 26878171 -200646407 + L1PA7 LINE L1 5542 6154 0 * 11384 99 23 1 chr3 26878164 26880610 -200643968 + L1PA7 LINE L1 3996 6469 0 247 191 0 0 chr3 26880665 26880712 -200643866 - L1MA5A LINE L1 -529 5768 5722 * 1200 148 5 0 chr3 26880709 26880925 -200643653 - L1PA12 LINE L1 -2225 5359 5143 1269 185 24 31 chr3 26881034 26881326 -200643252 - SVA Other Other -665 721 432 10872 171 18 69 chr3 26881356 26881842 -200642736 - L1PA12 LINE L1 -2441 5143 4634 180 0 0 0 chr3 26881842 26881862 -200642716 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1010 107 0 0 chr3 26881862 26881993 -200642585 - AluSc SINE Alu -47 262 132 2301 96 7 7 chr3 26881993 26882296 -200642282 - AluSp SINE Alu -10 303 1 10872 171 18 69 chr3 26882296 26882359 -200642219 - L1PA12 LINE L1 -2948 4636 4571 520 146 12 0 chr3 26882359 26882441 -200642137 - AluSc SINE Alu -183 126 44 10872 171 18 69 chr3 26882441 26885659 -200638919 - L1PA12 LINE L1 -3013 4571 1400 281 344 65 47 chr3 26885839 26886200 -200638378 - L2 LINE L2 -247 3025 2660 12262 166 22 28 chr3 26886722 26889418 -200635160 + L1MA4 LINE L1 2628 5308 -838 1713 139 35 0 chr3 26889415 26889725 -200634853 + L1MA4 LINE L1 5789 6109 -191 * 995 117 9 61 chr3 26889784 26889896 -200634682 + L1MA4 LINE L1 6099 6196 -104 2273 115 0 0 chr3 26889896 26890192 -200634386 - AluSx SINE Alu -16 296 1 995 117 9 61 chr3 26890192 26890292 -200634286 + L1MA4 LINE L1 6196 6300 0 1694 178 0 14 chr3 26890341 26890663 -200633915 - AluJb SINE Alu 0 318 1 1243 206 76 7 chr3 26890907 26891314 -200633264 - Charlie4a DNA MER1_type -14 494 60 730 109 0 70 chr3 26891428 26891556 -200633022 + L1PA13 LINE L1 6034 6152 -11 451 229 47 41 chr3 26892184 26892354 -200632224 + MER112 DNA MER1_type 7 177 -83 369 172 39 8 chr3 26892514 26892642 -200631936 + (TA)n Simple_repeat Simple_repeat 1 132 0 2831 142 50 21 chr3 26892814 26893337 -200631241 + MER21A LTR ERV1 375 912 -19 1395 171 96 11 chr3 26893542 26893823 -200630755 - AluSx SINE Alu -7 305 1 225 232 32 21 chr3 26894081 26894176 -200630402 - L1MC5 LINE L1 -44 7917 7822 2135 99 3 3 chr3 26894176 26894468 -200630110 - AluSp SINE Alu -21 292 1 1074 213 137 15 chr3 26894752 26894877 -200629701 + L1ME3 LINE L1 5699 5807 -355 2301 97 3 0 chr3 26894877 26895175 -200629403 + AluSg SINE Alu 1 299 -11 1074 213 137 15 chr3 26895175 26895392 -200629186 + L1ME3 LINE L1 5807 6083 -79 230 191 0 0 chr3 26895537 26895579 -200628999 - 5S rRNA rRNA -79 42 1 22 0 0 0 chr3 26895616 26895638 -200628940 + AT_rich Low_complexity Low_complexity 1 22 0 32 43 0 0 chr3 26896623 26896669 -200627909 + AT_rich Low_complexity Low_complexity 1 46 0 223 357 94 62 chr3 26897307 26897531 -200627047 - MIR SINE MIR -12 250 20 26 0 0 0 chr3 26897654 26897680 -200626898 + AT_rich Low_complexity Low_complexity 1 26 0 400 289 45 26 chr3 26897726 26897960 -200626618 + L1M3e LINE L1 7 1013 -6024 1978 214 26 15 chr3 26898571 26899152 -200625426 + L1M3e LINE L1 1802 2384 -4653 * 2065 141 13 107 chr3 26899150 26899496 -200625082 + L1MA9 LINE L1 5808 6090 -222 1762 158 38 0 chr3 26899496 26899787 -200624791 - AluJb SINE Alu -10 302 1 2065 141 13 107 chr3 26899787 26899964 -200624614 + L1MA9 LINE L1 6090 6282 -30 1997 238 30 5 chr3 26899979 26900538 -200624040 - L1MC4a LINE L1 -47 7761 7189 221 275 43 29 chr3 26901133 26901202 -200623376 - L2 LINE L2 -3 3269 3200 872 198 53 135 chr3 26901225 26901624 -200622954 - MLT1A2 LTR MaLR -5 369 12 2047 118 0 56 chr3 26902057 26902380 -200622198 - AluSg SINE Alu -5 305 1 1864 160 7 3 chr3 26902598 26902892 -200621686 - AluJb SINE Alu -17 295 1 526 182 35 98 chr3 26904292 26904495 -200620083 - L1MC5 LINE L1 -48 7913 7724 656 302 72 0 chr3 26904540 26904775 -200619803 - MIR SINE MIR 0 262 11 261 293 58 35 chr3 26904917 26905127 -200619451 + MIR3 SINE MIR 6 255 -7 249 235 0 0 chr3 26905645 26905696 -200618882 - L3b LINE CR1 -425 1158 1108 198 171 0 0 chr3 26906126 26906167 -200618411 + (CA)n Simple_repeat Simple_repeat 2 42 0 39 22 0 0 chr3 26906211 26906257 -200618321 + AT_rich Low_complexity Low_complexity 1 46 0 772 161 0 0 chr3 26906257 26906375 -200618203 - FLAM_C SINE Alu -15 118 1 575 243 49 25 chr3 26906689 26906896 -200617682 - MLT1H LTR MaLR 0 550 344 960 191 40 35 chr3 26907025 26907253 -200617325 - AluJb SINE Alu 0 313 85 2225 104 3 3 chr3 26907308 26907605 -200616973 - AluSg SINE Alu -13 297 1 630 240 14 1 chr3 26907606 26907755 -200616823 - MLT1H LTR MaLR -335 214 17 400 348 58 5 chr3 26907918 26908154 -200616424 + MIR SINE MIR 2 247 -15 463 138 32 81 chr3 26908213 26908336 -200616242 + MER94 DNA DNA 2 118 -16 2144 112 3 0 chr3 26908512 26908798 -200615780 + AluSx SINE Alu 11 297 -15 1664 143 38 6 chr3 26909311 26909739 -200614839 - MER61D LTR ERV1 0 501 1 342 292 43 47 chr3 26910272 26910439 -200614139 - L1MEd LINE L1 -841 1649 1483 645 244 91 35 chr3 26910439 26910636 -200613942 + MER63A DNA MER1_type 1 208 -2 342 292 43 47 chr3 26910636 26910868 -200613710 - L1MEd LINE L1 -1007 1483 1251 1540 201 3 7 chr3 26910868 26911156 -200613422 + AluJo SINE Alu 1 287 -25 342 292 43 47 chr3 26911156 26911419 -200613159 - L1MEd LINE L1 -1239 1251 919 447 306 155 18 chr3 26911605 26911824 -200612754 - MIR SINE MIR -3 259 11 412 206 64 43 chr3 26911862 26912003 -200612575 - L1ME3A LINE L1 -7 6163 6020 322 241 68 30 chr3 26912121 26912254 -200612324 - L1MEd LINE L1 -1977 4667 4530 263 167 0 0 chr3 26912282 26912324 -200612254 + MER39 LTR ERV1 1 42 -665 1301 210 41 4 chr3 26912370 26912762 -200611816 + LTR48 LTR ERV1 138 739 -48 1640 222 65 34 chr3 26912897 26913375 -200611203 - MLT1D LTR MaLR -12 493 1 750 249 34 55 chr3 26913387 26913805 -200610773 - L1MEd LINE L1 -2228 4416 4008 * 6199 177 56 16 chr3 26913804 26914599 -200609979 - L1PA16 LINE L1 0 6869 6108 2017 135 3 3 chr3 26914599 26914902 -200609676 - AluSx SINE Alu -9 303 1 6199 177 56 16 chr3 26914902 26916558 -200608020 - L1PA16 LINE L1 -761 6108 4342 6589 176 9 40 chr3 26916560 26918566 -200606012 - L1PA16 LINE L1 -5009 1840 5 808 272 80 23 chr3 26918566 26919108 -200605470 - L1M4 LINE L1 -2623 3523 2933 1910 123 50 41 chr3 26919108 26919448 -200605130 + MER61A LTR ERV1 1 343 0 808 272 80 23 chr3 26919448 26919589 -200604989 - L1M4 LINE L1 -3213 2933 2801 524 276 99 0 chr3 26919716 26919868 -200604710 - MLT1G1 LTR MaLR 0 595 429 2979 223 90 22 chr3 26919881 26920538 -200604040 - L1MEd LINE L1 -2735 3909 3299 1645 212 21 16 chr3 26920538 26920910 -200603668 - MLT1A2 LTR MaLR 0 374 1 2979 223 90 22 chr3 26920910 26921557 -200603021 - L1MEd LINE L1 -3345 3299 2560 25 31 0 0 chr3 26921721 26921753 -200602825 + AT_rich Low_complexity Low_complexity 1 32 0 1450 169 42 0 chr3 26921763 26922025 -200602553 + AluJb SINE Alu 37 308 0 210 209 45 15 chr3 26922029 26922096 -200602482 + (TTTA)n Simple_repeat Simple_repeat 2 70 0 335 203 169 45 chr3 26922120 26922344 -200602234 - L1MEd LINE L1 -4533 2173 1922 497 221 104 59 chr3 26922414 26922703 -200601875 - L1MC5 LINE L1 -48 7913 7612 745 160 6 6 chr3 26922895 26923064 -200601514 + CT-rich Low_complexity Low_complexity 4 172 0 868 221 172 48 chr3 26923066 26923646 -200600932 - L1MC5 LINE L1 -470 7491 6840 320 298 53 0 chr3 26923646 26923760 -200600818 - L1MC4a LINE L1 -1643 6165 6046 1122 262 125 5 chr3 26923859 26924283 -200600295 - L1MC4a LINE L1 -1871 5937 5463 33 0 0 0 chr3 26924287 26924320 -200600258 + AT_rich Low_complexity Low_complexity 1 33 0 826 127 0 0 chr3 26924320 26924438 -200600140 - FLAM_C SINE Alu -15 118 1 514 278 116 20 chr3 26924473 26924946 -200599632 - L1MEd LINE L1 -4831 1772 1254 1571 203 0 17 chr3 26926116 26926412 -200598166 + AluJo SINE Alu 1 291 -21 251 314 160 26 chr3 26926870 26927064 -200597514 - MIR SINE MIR -3 259 40 202 390 89 12 chr3 26927143 26927312 -200597266 + L2 LINE L2 3062 3243 -29 309 230 22 19 chr3 26928189 26928298 -200596280 - MLT1I LTR MaLR -271 138 68 26 0 0 0 chr3 26928593 26928619 -200595959 + AT_rich Low_complexity Low_complexity 1 26 0 5200 132 32 20 chr3 26928619 26929524 -200595054 - L1MA4 LINE L1 -11 6289 5370 1629 169 16 36 chr3 26929524 26929831 -200594747 - AluJb SINE Alu -11 301 1 5200 132 32 20 chr3 26929831 26929889 -200594689 - L1MA4 LINE L1 -930 5370 5314 499 150 0 0 chr3 26930287 26930367 -200594211 + L1MC1 LINE L1 6246 6325 -8 583 268 153 0 chr3 26930613 26930770 -200593808 + MER5A DNA MER1_type 9 189 0 2905 234 47 15 chr3 26930965 26931913 -200592665 + L1ME1 LINE L1 5191 6162 -4 186 133 0 0 chr3 26932073 26932103 -200592475 + (A)n Simple_repeat Simple_repeat 1 30 0 7580 35 3 2 chr3 26932558 26933550 -200591028 - L1P LINE L1 -2364 3782 2790 755 54 0 0 chr3 26933550 26933638 -200590940 + L1PA5 LINE L1 6055 6146 -8 688 149 0 57 chr3 26933707 26933727 -200590851 - L1MA3 LINE L1 0 6305 6285 2671 96 6 0 chr3 26933727 26934080 -200590498 - THE1A LTR MaLR 0 355 1 11308 93 13 11 chr3 26934080 26935217 -200589361 - THE1A-int LTR MaLR 0 1580 437 2282 88 0 0 chr3 26935217 26935564 -200589014 - AluY SINE Alu 0 347 1 11308 93 13 11 chr3 26935564 26936002 -200588576 - THE1A-int LTR MaLR -1143 437 1 2675 96 3 0 chr3 26936002 26936356 -200588222 - THE1A LTR MaLR 0 355 1 688 149 0 57 chr3 26936356 26936474 -200588104 - L1MA3 LINE L1 -17 6288 6173 21 36 0 0 chr3 26937097 26937125 -200587453 + AT_rich Low_complexity Low_complexity 1 28 0 2148 125 16 0 chr3 26937270 26937574 -200587004 - AluSq SINE Alu -4 309 1 2169 267 46 30 chr3 26938489 26939361 -200585217 + L1PBa LINE L1 177 1062 -5801 580 103 11 0 chr3 26939386 26939473 -200585105 + MSTA LTR MaLR 6 93 -335 687 138 9 0 chr3 26939473 26939582 -200584996 + L1PB3 LINE L1 6044 6153 -1 848 204 240 11 chr3 26939737 26940012 -200584566 + MER58B DNA MER1_type 1 338 -3 16420 40 1 1 chr3 26940635 26943403 -200581175 - L1PA4 LINE L1 -2 6153 3382 653 247 19 39 chr3 26945180 26945439 -200579139 + L1MC/D LINE L1 5255 5508 -2300 860 187 23 6 chr3 26946141 26946312 -200578266 - MER58A DNA MER1_type 0 224 51 236 324 28 0 chr3 26946333 26946404 -200578174 - MER58A DNA MER1_type -34 73 1 571 256 12 12 chr3 26946873 26947033 -200577545 - MER69A DNA AcHobo -15 162 3 230 341 155 31 chr3 26947063 26947477 -200577101 - L2 LINE L2 -697 2617 2153 21 57 0 0 chr3 26947684 26947719 -200576859 + AT_rich Low_complexity Low_complexity 1 35 0 275 309 57 0 chr3 26948462 26948585 -200575993 + L2 LINE L2 2148 2277 -1037 2412 136 47 2 chr3 26948690 26949096 -200575482 - MSTA LTR MaLR -2 426 3 446 246 35 9 chr3 26949348 26949462 -200575116 - MIR SINE MIR -54 208 92 567 200 179 7 chr3 26949752 26949892 -200574686 - MER5A DNA MER1_type 0 189 26 520 356 46 9 chr3 26950491 26950710 -200573868 + MIR SINE MIR 35 261 -1 214 328 86 0 chr3 26950796 26950854 -200573724 - L2 LINE L2 -43 3270 3208 24 0 0 0 chr3 26951347 26951371 -200573207 + AT_rich Low_complexity Low_complexity 1 24 0 1263 181 13 0 chr3 26951471 26951703 -200572875 + AluJo SINE Alu 1 235 -77 189 132 0 0 chr3 26951764 26951802 -200572776 + (T)n Simple_repeat Simple_repeat 1 38 0 21 71 0 0 chr3 26951878 26951920 -200572658 + AT_rich Low_complexity Low_complexity 1 42 0 290 366 9 11 chr3 26952497 26952607 -200571971 + MIR SINE MIR 6 116 -92 489 348 114 4 chr3 26952690 26952917 -200571661 + MIR SINE MIR 1 252 -10 322 337 84 42 chr3 26952944 26953276 -200571302 + L2 LINE L2 1978 2323 -991 499 220 40 10 chr3 26953362 26953488 -200571090 + MLT1H LTR MaLR 98 212 -197 555 373 79 41 chr3 26953769 26954693 -200569885 + L2 LINE L2 2316 3272 0 487 346 91 34 chr3 26955702 26956052 -200568526 + LTR16C LTR ERVL 120 489 -2 195 372 48 48 chr3 26956555 26956700 -200567878 + L2 LINE L2 3118 3262 -10 388 283 63 44 chr3 26957211 26957318 -200567260 + MIR SINE MIR 46 158 -104 1387 214 90 45 chr3 26957318 26957697 -200566881 + MSTD LTR MaLR 1 396 0 388 283 63 44 chr3 26957697 26957748 -200566830 + MIR SINE MIR 158 207 -55 2086 148 3 0 chr3 26958330 26958640 -200565938 - AluSx SINE Alu -1 311 1 979 89 34 27 chr3 26959494 26959640 -200564938 + L1PA11 LINE L1 6027 6173 -1 3424 64 0 11 chr3 26959744 26960195 -200564383 + L1PA7 LINE L1 5709 6154 0 270 284 101 47 chr3 26960198 26960367 -200564211 - MER5B DNA MER1_type 0 178 1 673 233 94 0 chr3 26960439 26960598 -200563980 - MER5B DNA MER1_type 0 178 5 234 252 155 39 chr3 26960786 26960889 -200563689 - L2 LINE L2 0 3313 3199 1981 140 27 0 chr3 26962597 26962890 -200561688 + AluSx SINE Alu 1 301 -11 3384 111 148 124 chr3 26963524 26964896 -200559682 - pTR5 LTR ERV1 0 2606 1524 985 232 80 49 chr3 26965153 26965602 -200558976 + MER4C LTR ERV1 1 463 -2 408 316 90 19 chr3 26967082 26967294 -200557284 - MIR SINE MIR -4 258 32 201 239 0 0 chr3 26967676 26967722 -200556856 - L2 LINE L2 -6 3307 3262 300 276 0 13 chr3 26967886 26967962 -200556616 + (TGAA)n Simple_repeat Simple_repeat 3 77 0 234 306 139 0 chr3 26968746 26968854 -200555724 + MIR SINE MIR 84 206 -56 7478 181 44 16 chr3 26969035 26969944 -200554634 - L1MB1 LINE L1 -1 5991 5109 2006 189 53 19 chr3 26969944 26970356 -200554222 - MSTB LTR MaLR 0 426 1 7478 181 44 16 chr3 26970356 26971239 -200553339 - L1MB1 LINE L1 -883 5109 4253 2017 105 11 0 chr3 26971239 26971550 -200553028 + AluY SINE Alu 1 314 0 7478 181 44 16 chr3 26971550 26972373 -200552205 - L1MB1 LINE L1 -1739 4253 3295 12984 173 52 27 chr3 26972384 26974034 -200550544 - L1PB1 LINE L1 0 6867 5261 2153 116 14 0 chr3 26974034 26974327 -200550251 - AluSx SINE Alu -15 297 1 12984 173 52 27 chr3 26974327 26979360 -200545218 - L1PB1 LINE L1 -1606 5261 6 4050 71 13 4 chr3 26979422 26979960 -200544618 + L1PA6 LINE L1 5610 6152 -2 1264 223 86 18 chr3 26979966 26980512 -200544066 - L1MB1 LINE L1 -2696 3274 2692 1028 166 43 0 chr3 26980512 26980675 -200543903 + AluSg/x SINE Alu 134 303 -9 2074 266 80 35 chr3 26980676 26983088 -200541490 - L1MB1 LINE L1 -3270 2700 2 553 199 59 128 chr3 26983612 26983772 -200540806 + L1MC5 LINE L1 7289 7458 -503 2346 126 25 3 chr3 26983772 26984128 -200540450 + THE1B LTR MaLR 1 364 0 553 199 59 128 chr3 26984128 26984359 -200540219 + L1MC5 LINE L1 7458 7653 -308 32984 100 11 27 chr3 26984370 26990614 -200533964 + L1PA7 LINE L1 12 6152 -2 186 118 0 0 chr3 26991455 26991489 -200533089 + (CATA)n Simple_repeat Simple_repeat 3 36 0 24 32 0 0 chr3 26991770 26991801 -200532777 + AT_rich Low_complexity Low_complexity 1 31 0 1794 185 11 0 chr3 26991801 26992088 -200532490 - AluJb SINE Alu -22 290 1 1449 231 3 6 chr3 26993309 26993629 -200530949 + MLT1A2 LTR MaLR 56 374 0 587 128 55 0 chr3 26993629 26993738 -200530840 + MLT1A2-int LTR MaLR 1 115 -1256 * 956 173 35 0 chr3 26993728 26993925 -200530653 + MLT1A2-int LTR MaLR 259 462 -909 2437 150 46 17 chr3 26993925 26994339 -200530239 - MSTB LTR MaLR 0 426 1 2833 155 10 15 chr3 26994355 26995085 -200529493 - L1M1 LINE L1 -743 6822 6182 3850 169 42 44 chr3 26995118 26995909 -200528669 + MER52A LTR ERV1 967 1755 0 1806 188 3 0 chr3 26995910 26996262 -200528316 - L1M1 LINE L1 -2012 5553 5201 14215 151 106 76 chr3 26996274 26999553 -200525025 - L1M1 LINE L1 -4183 3382 8 374 285 95 92 chr3 26999761 27000172 -200524406 - MLT1H LTR MaLR -2 547 136 300 212 0 15 chr3 27000881 27000947 -200523631 - L1MC4 LINE L1 -1364 6678 6614 182 37 37 0 chr3 27000955 27000982 -200523596 + (TG)n Simple_repeat Simple_repeat 2 29 0 274 78 20 20 chr3 27001039 27001090 -200523488 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 4575 107 29 21 chr3 27001515 27002269 -200522309 - L1PA16 LINE L1 0 6166 5407 2758 206 1 19 chr3 27002291 27002388 -200522190 - L1 LINE L1 -1089 5643 5546 1768 164 40 32 chr3 27002388 27002760 -200521818 - THE1C LTR MaLR 0 375 1 2758 206 1 19 chr3 27002760 27003340 -200521238 - L1 LINE L1 -1186 5546 4978 215 359 111 17 chr3 27005265 27005382 -200519196 + L2 LINE L2 3140 3267 -5 2189 117 0 3 chr3 27006109 27006407 -200518171 + AluSq SINE Alu 1 297 -16 885 143 0 0 chr3 27006774 27006907 -200517671 - FLAM_C SINE Alu 0 133 1 808 246 155 93 chr3 27006924 27007160 -200517418 - HAL1 LINE L1 -1207 1300 1080 430 56 0 0 chr3 27007160 27007214 -200517364 - MADE1 DNA Mariner -26 54 1 808 246 155 93 chr3 27007214 27007550 -200517028 - HAL1 LINE L1 -1427 1080 636 1165 186 14 5 chr3 27007572 27007793 -200516785 + L1MD2 LINE L1 5666 5888 -471 290 123 68 82 chr3 27007856 27007929 -200516649 - L1MD2 LINE L1 -466 5893 5822 * 883 308 18 36 chr3 27007928 27008425 -200516153 - L1MA4A LINE L1 -378 5925 5438 2315 117 14 8 chr3 27008575 27008934 -200515644 - L1PA11 LINE L1 0 6174 5814 1539 177 87 0 chr3 27008934 27009211 -200515367 - MSTC LTR MaLR -127 301 1 3950 226 40 28 chr3 27009211 27010866 -200513712 - L1 LINE L1 -2895 3837 2153 * 6219 238 31 24 chr3 27010858 27011105 -200513473 - L1 LINE L1 -4801 1852 1608 1836 167 44 19 chr3 27011105 27011471 -200513107 + THE1C LTR MaLR 1 375 0 9508 133 10 43 chr3 27011474 27012897 -200511681 + THE1C-int LTR MaLR 4 1368 -212 1409 101 187 82 chr3 27012897 27013164 -200511414 - AluSx SINE Alu -17 295 1 9508 133 10 43 chr3 27013164 27013371 -200511207 + THE1C-int LTR MaLR 1368 1580 0 1836 137 71 14 chr3 27013371 27013722 -200510856 + THE1C LTR MaLR 1 371 -4 6219 238 31 24 chr3 27013722 27015374 -200509204 - L1 LINE L1 -5045 1608 2 398 126 10 2 chr3 27015384 27015461 -200509117 - L1M LINE L1 -835 5335 5255 6864 62 8 24 chr3 27015506 27017225 -200507353 - L1PA7 LINE L1 -3 6151 4449 2665 105 36 0 chr3 27017225 27017615 -200506963 + L1PA7 LINE L1 4051 4454 -1692 498 106 59 0 chr3 27017632 27017717 -200506861 - L1PA16 LINE L1 -9 6157 6068 2680 235 59 21 chr3 27017719 27018076 -200506502 - L1M4 LINE L1 -883 5263 4921 2631 36 3 0 chr3 27018076 27018379 -200506199 + AluY SINE Alu 1 304 -7 2680 235 59 21 chr3 27018379 27018872 -200505706 - L1M4 LINE L1 -1225 4921 4381 230 310 0 0 chr3 27018921 27018979 -200505599 + L2 LINE L2 3246 3303 -10 * 513 313 31 10 chr3 27018968 27019159 -200505419 + MIR3 SINE MIR 11 207 -1 306 340 87 20 chr3 27021039 27021189 -200503389 - MIR3 SINE MIR -7 201 42 824 293 19 64 chr3 27022413 27022516 -200502062 - LTR16A1 LTR ERVL -12 445 339 2053 132 127 18 chr3 27022516 27022902 -200501676 - MSTA LTR MaLR 0 428 1 824 293 19 64 chr3 27022902 27023157 -200501421 - LTR16A1 LTR ERVL -118 339 103 3164 164 29 5 chr3 27023157 27023713 -200500865 - LTR24B LTR ERV1 -7 569 1 571 317 85 40 chr3 27024071 27024527 -200500051 + L1ME LINE L1 5322 5745 -376 287 333 83 24 chr3 27024695 27024863 -200499715 + MIR SINE MIR 74 251 -11 298 382 115 0 chr3 27025018 27025183 -200499395 - MIR3 SINE MIR -2 206 23 1575 204 120 14 chr3 27026896 27027254 -200497324 - MSTD LTR MaLR 0 396 1 1189 219 119 53 chr3 27028096 27028456 -200496122 + MLT1D LTR MaLR 3 386 -119 10593 57 1 4 chr3 27028487 27030629 -200493949 - L1PA5 LINE L1 0 6154 4018 12126 67 3 1 chr3 27030629 27032253 -200492325 + L1PA5 LINE L1 2384 4010 -2136 682 194 0 8 chr3 27032254 27032388 -200492190 + MLT1D LTR MaLR 373 505 0 1095 178 25 0 chr3 27032609 27032806 -200491772 + MER3 DNA MER1_type 4 205 -4 335 294 67 0 chr3 27032993 27033112 -200491466 - Charlie8 DNA MER1_type -2176 241 115 390 244 55 55 chr3 27033271 27033398 -200491180 + MER91B DNA MER1_type 2 128 -62 316 250 18 107 chr3 27033416 27033528 -200491050 + MER91B DNA MER1_type 89 190 0 181 308 26 51 chr3 27033813 27033891 -200490687 + L2 LINE L2 3193 3268 -4 420 359 34 94 chr3 27035312 27035727 -200488851 + L2 LINE L2 2883 3272 0 463 165 28 92 chr3 27036540 27036649 -200487929 + MER20 DNA MER1_type 2 103 -116 1040 180 83 7 chr3 27036855 27037133 -200487445 + MER33 DNA MER1_type 26 324 0 204 351 211 18 chr3 27037235 27037349 -200487229 - L2 LINE L2 0 3272 3137 241 360 171 21 chr3 27037959 27038198 -200486380 + L2 LINE L2 3006 3280 -33 587 258 96 18 chr3 27038207 27038464 -200486114 - LTR16A1 LTR ERVL -16 441 160 249 290 0 0 chr3 27038624 27038686 -200485892 + L2 LINE L2 3250 3311 -2 9836 29 3 0 chr3 27040033 27041237 -200483341 - L1P LINE L1 -2430 3716 2509 12385 27 0 0 chr3 27041237 27043488 -200481090 + L1PA3 LINE L1 3913 6165 0 4347 227 20 12 chr3 27043764 27044664 -200479914 + L1MA1 LINE L1 19 925 -6640 * 9579 172 21 13 chr3 27044661 27047276 -200477302 + L1MA1 LINE L1 2990 5625 -1940 1764 143 5 215 chr3 27047256 27047926 -200476652 + L1MA1 LINE L1 6130 6658 -907 * 5641 128 38 5 chr3 27047949 27048821 -200475757 + THE1C-int LTR MaLR 680 1580 0 2185 133 8 39 chr3 27048821 27049206 -200475372 + THE1C LTR MaLR 1 373 -2 6178 121 40 9 chr3 27049208 27050244 -200474334 + L1MA1 LINE L1 6654 7721 0 287 307 31 51 chr3 27050290 27050583 -200473995 + HAL1 LINE L1 1382 1668 -839 1587 197 0 48 chr3 27050611 27050967 -200473611 + MER44D DNA MER2_type 1 609 0 2319 126 24 16 chr3 27051032 27051404 -200473174 + THE1C LTR MaLR 1 375 0 6788 111 253 34 chr3 27051404 27052700 -200471878 + THE1C-int LTR MaLR 1 1580 0 2484 122 8 16 chr3 27052700 27053078 -200471500 + THE1C LTR MaLR 1 375 0 269 258 0 0 chr3 27054440 27054506 -200470072 + (TGAA)n Simple_repeat Simple_repeat 3 68 0 304 274 74 0 chr3 27055265 27055360 -200469218 - MIR SINE MIR 0 262 161 257 321 41 41 chr3 27055851 27056069 -200468509 + L3 LINE CR1 591 808 -769 326 294 103 0 chr3 27056222 27056348 -200468230 + L3 LINE CR1 890 1028 -549 327 350 75 15 chr3 27056362 27056562 -200468016 + L3 LINE CR1 1357 1568 -9 200 191 0 24 chr3 27056576 27056618 -200467960 + MIR SINE MIR 111 151 -57 4757 184 73 55 chr3 27057092 27057325 -200467253 + Charlie1a DNA MER1_type 2 229 -2532 2179 116 30 48 chr3 27057325 27057483 -200467095 + THE1B LTR MaLR 1 160 -204 2134 104 4 0 chr3 27057483 27057786 -200466792 - AluSg SINE Alu 0 308 5 2179 116 30 48 chr3 27057786 27057997 -200466581 + THE1B LTR MaLR 160 364 0 4757 184 73 55 chr3 27057997 27059191 -200465387 + Charlie1a DNA MER1_type 229 1455 0 7222 38 22 0 chr3 27060008 27060888 -200463690 - L1PA3 LINE L1 -3 6152 5254 363 302 4 146 chr3 27061080 27061218 -200463360 - MIR SINE MIR -17 245 162 2119 128 0 0 chr3 27061218 27061514 -200463064 - AluSx SINE Alu -15 297 2 363 302 4 146 chr3 27061514 27061643 -200462935 - MIR SINE MIR -100 162 16 12414 144 19 13 chr3 27061719 27063777 -200460801 + Tigger1 DNA MER2_type 15 2086 -332 4854 162 28 45 chr3 27063779 27064321 -200460257 - L1MA4 LINE L1 -15 6285 5736 1984 92 26 3 chr3 27064321 27064624 -200459954 - L1MA2 LINE L1 0 6304 5995 4854 162 28 45 chr3 27064624 27066031 -200458547 - L1MA4 LINE L1 -564 5736 4369 6755 134 7 13 chr3 27066049 27066685 -200457893 - L1MA2 LINE L1 0 6304 5666 2072 122 14 0 chr3 27066685 27066972 -200457606 - AluSc SINE Alu -18 291 1 6755 134 7 13 chr3 27066972 27067807 -200456771 - L1MA2 LINE L1 -638 5666 4839 943 345 7 29 chr3 27067918 27068370 -200456208 - L1M3a LINE L1 -5503 452 11 1506 172 181 3 chr3 27068376 27068679 -200455899 + Tigger1 DNA MER2_type 2061 2417 -1 219 69 0 0 chr3 27068707 27068736 -200455842 + (TC)n Simple_repeat Simple_repeat 2 30 0 216 188 0 0 chr3 27069147 27069195 -200455383 + (TTTAA)n Simple_repeat Simple_repeat 4 51 0 5878 181 12 10 chr3 27069232 27071373 -200453205 + L1PA16 LINE L1 4025 6166 0 29 0 0 0 chr3 27071384 27071413 -200453165 + AT_rich Low_complexity Low_complexity 1 29 0 239 221 26 13 chr3 27071484 27071561 -200453017 - L1M4 LINE L1 -1961 4185 4108 349 311 68 21 chr3 27071687 27071877 -200452701 - L1M4 LINE L1 -2194 3952 3754 35562 36 2 1 chr3 27071910 27077036 -200447542 + L1PA3 LINE L1 1024 6152 -3 603 178 9 0 chr3 27077047 27077154 -200447424 + MLT2F LTR ERVL 556 663 0 1318 184 0 0 chr3 27078241 27078453 -200446125 + AluJb SINE Alu 79 290 -22 544 286 21 87 chr3 27078463 27078704 -200445874 + MIR SINE MIR 38 262 0 3566 131 24 2 chr3 27079211 27079784 -200444794 - L1PA16 LINE L1 0 6166 5581 261 282 59 0 chr3 27079964 27080049 -200444529 - MLT1K LTR MaLR 0 588 499 216 286 0 88 chr3 27080505 27080596 -200443982 - MIR SINE MIR -160 102 20 629 224 60 27 chr3 27081011 27081194 -200443384 - L1ME3A LINE L1 -9 6161 5973 32 26 0 0 chr3 27081958 27081997 -200442581 + AT_rich Low_complexity Low_complexity 1 39 0 22311 38 1 0 chr3 27081997 27085495 -200439083 - L1PA4 LINE L1 -11 6144 2646 1003 191 54 33 chr3 27085853 27086094 -200438484 + MLT2B3 LTR ERVL 1 246 -308 759 235 71 6 chr3 27086388 27086571 -200438007 + MER63A DNA MER1_type 2 196 -14 1489 260 70 24 chr3 27086884 27087397 -200437181 - MLT1F1 LTR MaLR 0 567 27 2226 120 38 14 chr3 27088741 27089107 -200435471 + THE1C LTR MaLR 1 375 0 292 307 13 0 chr3 27089892 27089967 -200434611 - MLT1L LTR MaLR -127 488 413 235 208 38 0 chr3 27090307 27090360 -200434218 + (TATG)n Simple_repeat Simple_repeat 2 56 0 469 292 83 50 chr3 27090370 27090610 -200433968 + MIR SINE MIR 15 262 0 2144 150 3 57 chr3 27092023 27092410 -200432168 + MER47A DNA MER2_type 1 366 0 185 289 93 41 chr3 27092987 27093084 -200431494 + L2 LINE L2 2310 2411 -903 306 0 0 0 chr3 27094306 27094340 -200430238 + (TG)n Simple_repeat Simple_repeat 1 34 0 2044 195 42 26 chr3 27094795 27095247 -200429331 + MLT1C LTR MaLR 9 467 0 385 287 149 23 chr3 27095332 27095506 -200429072 - MLT1I LTR MaLR -114 295 100 21 71 0 0 chr3 27095788 27095830 -200428748 + AT_rich Low_complexity Low_complexity 1 42 0 225 222 0 19 chr3 27097510 27097564 -200427014 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 1009 81 0 0 chr3 27098106 27098242 -200426336 - AluY SINE Alu -7 304 169 582 82 0 0 chr3 27098242 27098327 -200426251 + Alu SINE Alu 225 309 0 1046 171 5 32 chr3 27098348 27098564 -200426014 + L1MC2 LINE L1 5808 6017 -327 1220 68 6 45 chr3 27098607 27098784 -200425794 - AluY SINE Alu -8 303 134 1357 183 50 47 chr3 27098784 27098812 -200425766 + L1MC2 LINE L1 6019 6045 -299 5012 111 83 0 chr3 27098812 27099575 -200425003 + LTR12 LTR ERV1 1 826 0 1357 183 50 47 chr3 27099575 27099863 -200424715 + L1MC2 LINE L1 6045 6336 -8 22 35 0 0 chr3 27099992 27100021 -200424557 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr3 27100071 27100101 -200424477 + AT_rich Low_complexity Low_complexity 1 30 0 278 130 130 0 chr3 27100191 27100260 -200424318 - L1MA8 LINE L1 -5 6286 6209 354 298 77 40 chr3 27100289 27100537 -200424041 + L1M4 LINE L1 4591 4847 -1299 2725 156 0 5 chr3 27100673 27101103 -200423475 - MSTA LTR MaLR 0 428 1 267 206 79 0 chr3 27103564 27103627 -200420951 - L1ME LINE L1 -507 5614 5547 30 27 0 0 chr3 27103708 27103745 -200420833 + AT_rich Low_complexity Low_complexity 1 37 0 1779 175 0 10 chr3 27103913 27104210 -200420368 + AluSx SINE Alu 1 294 -18 312 27 0 0 chr3 27104231 27104268 -200420310 + (GA)n Simple_repeat Simple_repeat 1 37 0 * 342 0 0 0 chr3 27104267 27104305 -200420273 + (TG)n Simple_repeat Simple_repeat 2 39 0 1359 214 191 19 chr3 27105467 27105897 -200418681 - MLT1D LTR MaLR -1 504 1 33 66 0 0 chr3 27106039 27106100 -200418478 + AT_rich Low_complexity Low_complexity 1 61 0 1617 226 106 22 chr3 27106104 27106568 -200418010 - L1ME1 LINE L1 -5 6161 5659 217 227 0 0 chr3 27108271 27108315 -200416263 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 273 208 69 14 chr3 27108351 27108423 -200416155 - L2 LINE L2 -65 3248 3173 7410 35 6 0 chr3 27108713 27110290 -200414288 + L1PA4 LINE L1 4574 6155 0 444 151 0 2 chr3 27110291 27110368 -200414210 + L1PB3 LINE L1 6020 6095 -56 1672 176 10 7 chr3 27110638 27110927 -200413651 - AluJo SINE Alu -22 290 1 18879 172 62 23 chr3 27111535 27113447 -200411131 + L1M1 LINE L1 17 1855 -5710 201 74 0 0 chr3 27113447 27113474 -200411104 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 18879 172 62 23 chr3 27113474 27114429 -200410149 + L1M1 LINE L1 1855 2772 -4793 2259 117 3 0 chr3 27114429 27114729 -200409849 + AluSp SINE Alu 1 301 -12 18879 172 62 23 chr3 27114729 27116625 -200407953 + L1M1 LINE L1 2772 5005 -2560 1755 183 0 0 chr3 27116625 27116909 -200407669 + AluJo SINE Alu 20 303 -9 18879 172 62 23 chr3 27116909 27117382 -200407196 + L1M1 LINE L1 5005 5459 -2106 220 300 0 20 chr3 27117386 27117436 -200407142 - MIR SINE MIR -194 68 20 1763 247 99 53 chr3 27118276 27118430 -200406148 - MLT1E LTR MaLR 0 593 448 1042 156 62 9 chr3 27118430 27118655 -200405923 + L1MA8 LINE L1 6051 6287 -4 1763 247 99 53 chr3 27118655 27119067 -200405511 - MLT1E LTR MaLR -145 448 1 202 237 0 34 chr3 27119524 27119583 -200404995 + GA-rich Low_complexity Low_complexity 2 58 0 843 303 24 12 chr3 27120492 27120746 -200403832 + MIR SINE MIR 3 259 -3 378 304 126 0 chr3 27121064 27121199 -200403379 + MIR SINE MIR 97 248 -14 188 347 74 25 chr3 27121734 27121855 -200402723 - L3 LINE CR1 -11 1566 1440 2265 76 0 0 chr3 27122325 27122627 -200401951 - L1PA6 LINE L1 -2 6152 5851 252 0 0 0 chr3 27122631 27122659 -200401919 + (T)n Simple_repeat Simple_repeat 1 28 0 376 123 0 74 chr3 27123133 27123214 -200401364 - MADE1 DNA Mariner 0 80 6 1864 165 69 51 chr3 27123226 27123675 -200400903 + MSTB2 LTR MaLR 1 457 0 415 136 264 0 chr3 27123807 27123917 -200400661 + LTR41 LTR ERVL 52 190 -583 373 195 13 0 chr3 27124239 27124316 -200400262 + LTR41 LTR ERVL 695 772 -1 1027 309 40 9 chr3 27124443 27124767 -200399811 + LTR16C LTR ERVL 148 481 -10 412 143 214 0 chr3 27125746 27125830 -200398748 - MER5A DNA MER1_type 0 189 88 396 255 20 0 chr3 27125833 27125935 -200398643 + MER5B DNA MER1_type 75 178 0 2320 101 0 0 chr3 27125966 27126274 -200398304 - AluSc SINE Alu -1 308 1 504 255 161 19 chr3 27126282 27126443 -200398135 - MER5A DNA MER1_type -2 187 4 371 275 28 39 chr3 27128116 27128294 -200396284 + GA-rich Low_complexity Low_complexity 3 178 0 468 299 58 6 chr3 27128321 27128495 -200396083 - MIR SINE MIR -6 256 74 231 329 0 13 chr3 27129363 27129442 -200395136 + MER5A DNA MER1_type 112 189 0 245 358 131 7 chr3 27129573 27129710 -200394868 - MER5A DNA MER1_type 0 189 36 293 289 126 44 chr3 27129721 27129880 -200394698 - L3 LINE CR1 -51 1526 1355 2538 141 14 16 chr3 27130581 27131015 -200393563 + Tigger2a DNA MER2_type 2 434 0 306 242 36 113 chr3 27131116 27131310 -200393268 + MIR SINE MIR 84 262 0 2421 74 0 0 chr3 27134063 27134362 -200390216 - AluY SINE Alu 0 311 13 228 398 62 0 chr3 27136378 27136491 -200388087 - MIR SINE MIR -73 135 16 2330 146 32 0 chr3 27136846 27137251 -200387327 - L1MA4 LINE L1 -1 6299 5882 539 65 0 13 chr3 27137877 27137954 -200386624 + L1PA5 LINE L1 6078 6153 -1 286 338 150 33 chr3 27138164 27138525 -200386053 + L2 LINE L2 2870 3272 0 429 276 60 22 chr3 27139273 27139407 -200385171 - L2 LINE L2 -6 3307 3169 24 53 0 0 chr3 27139471 27139509 -200385069 + AT_rich Low_complexity Low_complexity 1 38 0 2153 98 0 0 chr3 27140264 27140540 -200384038 - AluSx SINE Alu -36 276 1 24 0 0 0 chr3 27140617 27140641 -200383937 + AT_rich Low_complexity Low_complexity 1 24 0 4842 163 30 14 chr3 27140653 27141008 -200383570 - L1MB1 LINE L1 -1 6167 5819 349 36 36 0 chr3 27141008 27141063 -200383515 + (CA)n Simple_repeat Simple_repeat 1 57 0 4842 163 30 14 chr3 27141063 27142067 -200382511 - L1MB1 LINE L1 -349 5819 4781 24 0 0 0 chr3 27142080 27142104 -200382474 + AT_rich Low_complexity Low_complexity 1 24 0 558 298 20 45 chr3 27144281 27144479 -200380099 + L2 LINE L2 3102 3294 -19 1707 152 3 21 chr3 27194573 27194883 -200329695 + AluJb SINE Alu 7 311 0 1373 187 30 26 chr3 27195074 27195342 -200329236 - AluJo SINE Alu -39 273 5 225 94 0 0 chr3 27195360 27195392 -200329186 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 2052 105 0 81 chr3 27195552 27195875 -200328703 - AluSx SINE Alu -15 297 1 2236 110 3 0 chr3 27195877 27196176 -200328402 - AluSx SINE Alu -12 300 1 1597 166 55 7 chr3 27197343 27197651 -200326927 + MER33 DNA MER1_type 1 323 -1 980 192 22 157 chr3 27198425 27198719 -200325859 - L1MC4 LINE L1 -1 8041 7856 2119 136 0 0 chr3 27198719 27199013 -200325565 - AluSx SINE Alu -18 294 1 980 192 22 157 chr3 27199013 27199274 -200325304 - L1MC4 LINE L1 -186 7856 7561 26 30 0 0 chr3 27199913 27199946 -200324632 + AT_rich Low_complexity Low_complexity 1 33 0 27 0 0 0 chr3 27201250 27201277 -200323301 + AT_rich Low_complexity Low_complexity 1 27 0 898 127 0 0 chr3 27201746 27201864 -200322714 + FLAM_C SINE Alu 1 118 -25 2002 135 10 13 chr3 27202175 27202487 -200322091 - AluSx SINE Alu -1 311 1 2061 153 0 6 chr3 27202665 27202979 -200321599 + AluJb SINE Alu 1 312 0 1815 167 0 7 chr3 27202995 27203276 -200321302 + AluJb SINE Alu 3 281 -31 1972 120 0 48 chr3 27203471 27203780 -200320798 - AluSg SINE Alu -16 294 1 1728 129 30 0 chr3 27203780 27204044 -200320534 + L1MA5A LINE L1 6020 6291 -6 2247 156 49 21 chr3 27204060 27204490 -200320088 - L1MA9 LINE L1 0 6312 5871 1525 185 22 33 chr3 27204491 27204767 -200319811 - AluJo SINE Alu -28 284 12 239 189 0 0 chr3 27204902 27204955 -200319623 + L1MC4 LINE L1 6652 6704 -1338 898 162 0 7 chr3 27205078 27205214 -200319364 - AluJb SINE Alu -49 263 129 1911 136 3 26 chr3 27205243 27205545 -200319033 - AluSq SINE Alu -18 295 1 2254 109 3 6 chr3 27205578 27205890 -200318688 + AluSp SINE Alu 1 311 -2 751 198 0 32 chr3 27206127 27206253 -200318325 - FLAM_A SINE Alu -11 122 1 284 259 47 0 chr3 27206289 27206374 -200318204 - L1MC/D LINE L1 -2019 5789 5701 333 263 11 32 chr3 27206467 27206562 -200318016 - L2 LINE L2 -4 3268 3176 1742 161 40 20 chr3 27206580 27206884 -200317694 + AluJb SINE Alu 1 310 -2 3512 143 35 41 chr3 27206884 27207513 -200317065 + L1MC2 LINE L1 5195 5818 -526 2285 107 3 7 chr3 27207513 27207822 -200316756 + AluSx SINE Alu 4 311 -1 3512 143 35 41 chr3 27207822 27207899 -200316679 + L1MC2 LINE L1 5818 5894 -450 1982 136 14 0 chr3 27207899 27208187 -200316391 + AluSx SINE Alu 1 386 0 660 75 11 0 chr3 27208187 27208281 -200316297 + (GAAA)n Simple_repeat Simple_repeat 3 180 0 2882 124 26 7 chr3 27208286 27208739 -200315839 + L1MC2 LINE L1 5874 6335 -9 343 256 151 12 chr3 27209071 27209243 -200315335 - MIR SINE MIR -4 258 63 352 25 0 0 chr3 27209266 27209306 -200315272 - L1MC/D LINE L1 -2188 5597 5558 417 291 156 32 chr3 27210076 27210344 -200314234 + L2 LINE L2 2712 3010 -262 2247 97 3 0 chr3 27210470 27210484 -200314094 - AluSx SINE Alu -12 300 288 543 101 0 0 chr3 27210484 27210563 -200314015 + (CTTA)n Simple_repeat Simple_repeat 1 79 0 2247 97 3 0 chr3 27210563 27210838 -200313740 - AluSx SINE Alu -24 288 10 2337 88 10 0 chr3 27210847 27211144 -200313434 - AluSp SINE Alu -13 300 1 28 0 0 0 chr3 27211282 27211310 -200313268 + AT_rich Low_complexity Low_complexity 1 28 0 688 241 120 26 chr3 27211520 27211711 -200312867 - MER3 DNA MER1_type 0 209 1 250 192 231 26 chr3 27211919 27211997 -200312581 + MIR SINE MIR 166 259 -3 24 0 0 0 chr3 27212027 27212051 -200312527 + AT_rich Low_complexity Low_complexity 1 24 0 1542 179 0 49 chr3 27212057 27212186 -200312392 + AluJb SINE Alu 18 152 -160 2107 116 10 10 chr3 27212186 27212488 -200312090 + AluSx SINE Alu 1 302 -10 1542 179 0 49 chr3 27212488 27212643 -200311935 + AluJb SINE Alu 152 288 -24 23 0 0 0 chr3 27212643 27212666 -200311912 + AT_rich Low_complexity Low_complexity 1 23 0 328 338 89 6 chr3 27212726 27212883 -200311695 + MIR SINE MIR 87 256 -6 2298 108 0 0 chr3 27212884 27213181 -200311397 - AluSx SINE Alu -15 297 1 3036 218 67 61 chr3 27213902 27213930 -200310648 - Zaphod DNA AcHobo -3060 971 945 2325 101 3 0 chr3 27213930 27214228 -200310350 - AluSx SINE Alu -13 299 1 3036 218 67 61 chr3 27214228 27214457 -200310121 - Zaphod DNA AcHobo -3086 945 719 2312 86 0 10 chr3 27214457 27214758 -200309820 - AluSp SINE Alu -11 302 5 3036 218 67 61 chr3 27214758 27215363 -200309215 - Zaphod DNA AcHobo -3312 719 100 1710 125 54 14 chr3 27215363 27215643 -200308935 - AluSx SINE Alu -21 291 1 3036 218 67 61 chr3 27215643 27215740 -200308838 - Zaphod DNA AcHobo -3931 100 5 1956 121 0 21 chr3 27215762 27216043 -200308535 + AluSx SINE Alu 1 275 -37 255 31 0 0 chr3 27216049 27216081 -200308497 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 2180 115 0 0 chr3 27216093 27216388 -200308190 + AluSx SINE Alu 1 295 -17 2070 145 3 0 chr3 27216476 27216786 -200307792 + AluSx SINE Alu 1 311 -1 491 307 24 16 chr3 27216907 27217158 -200307420 + L1ME3 LINE L1 4957 5209 -937 1068 218 79 113 chr3 27217185 27217437 -200307141 + L1ME3 LINE L1 5294 5553 -609 2332 103 0 0 chr3 27217437 27217739 -200306839 - AluSx SINE Alu -10 302 1 1808 149 57 0 chr3 27217741 27218022 -200306556 - AluSx SINE Alu -15 297 1 1068 218 79 113 chr3 27218022 27218210 -200306368 + L1ME3 LINE L1 5554 5747 -415 2260 92 31 0 chr3 27218210 27218502 -200306076 + AluSq SINE Alu 1 301 -12 1068 218 79 113 chr3 27218502 27218624 -200305954 + L1ME3 LINE L1 5747 5872 -290 1454 198 7 47 chr3 27218624 27218922 -200305656 + AluJb SINE Alu 1 286 -26 180 77 0 0 chr3 27218925 27218951 -200305627 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 1068 218 79 113 chr3 27218951 27219011 -200305567 + L1ME3 LINE L1 5874 5935 -227 2059 86 0 76 chr3 27219011 27219315 -200305263 + AluSq SINE Alu 1 281 -32 225 0 0 0 chr3 27219315 27219340 -200305238 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 1068 218 79 113 chr3 27219340 27219394 -200305184 + L1ME3 LINE L1 5933 5937 -225 559 310 46 29 chr3 27220368 27220649 -200303929 + L2 LINE L2 2937 3222 -91 298 133 0 0 chr3 27220756 27220801 -200303777 + L2 LINE L2 3265 3309 -4 414 146 62 62 chr3 27220863 27220959 -200303619 + AluY SINE Alu 2 97 -214 2177 93 0 30 chr3 27220988 27221290 -200303288 + AluSq SINE Alu 1 293 -20 202 179 0 0 chr3 27221290 27221329 -200303249 - MIR SINE MIR -129 133 95 1800 153 3 40 chr3 27221557 27221858 -200302720 + AluJb SINE Alu 17 306 -6 2120 123 3 0 chr3 27222084 27222397 -200302181 - AluSx SINE Alu 0 314 1 2109 108 0 14 chr3 27222417 27222714 -200301864 - AluSg1 SINE Alu 0 309 17 454 264 136 0 chr3 27223432 27223557 -200301021 + MIR SINE MIR 13 154 -108 650 274 227 29 chr3 27223570 27223989 -200300589 - L2 LINE L2 -1 3312 2811 1204 215 165 8 chr3 27223997 27224360 -200300218 - L1ME2 LINE L1 -16 6148 5729 1094 288 46 5 chr3 27224372 27224761 -200299817 - L2 LINE L2 -601 2713 2309 211 308 44 33 chr3 27224760 27224851 -200299727 + MIR SINE MIR 171 262 0 * 208 400 0 21 chr3 27225088 27225183 -200299395 + MIR SINE MIR 42 134 -74 219 331 35 28 chr3 27225578 27225723 -200298855 - L2 LINE L2 -1003 2311 2166 2347 87 17 0 chr3 27226475 27226775 -200297803 + AluSq SINE Alu 1 305 -8 437 226 205 19 chr3 27227165 27227312 -200297266 + MER5A DNA MER1_type 12 188 -1 25 0 0 0 chr3 27227404 27227429 -200297149 + AT_rich Low_complexity Low_complexity 1 25 0 2399 66 17 13 chr3 27227432 27227734 -200296844 + AluSx SINE Alu 2 304 -8 2295 75 41 0 chr3 27227734 27228028 -200296550 + AluY SINE Alu 1 306 -5 2513 219 32 5 chr3 27228028 27228594 -200295984 - L1MB8 LINE L1 -11 6167 5587 2231 89 4 0 chr3 27228618 27228928 -200295650 + AluSp SINE Alu 1 311 0 1531 173 13 70 chr3 27228937 27229263 -200295315 + AluJo SINE Alu 2 310 0 4243 172 28 7 chr3 27229263 27230012 -200294566 - L1MB3 LINE L1 -7 6176 5412 43 47 0 0 chr3 27230014 27230078 -200294500 + AT_rich Low_complexity Low_complexity 1 64 0 351 86 105 6 chr3 27230090 27230252 -200294326 + (TA)n Simple_repeat Simple_repeat 1 178 0 296 125 75 0 chr3 27230253 27230333 -200294245 + (TATAA)n Simple_repeat Simple_repeat 4 89 0 417 66 90 18 chr3 27230677 27230844 -200293734 + (TA)n Simple_repeat Simple_repeat 1 179 0 306 56 127 0 chr3 27230864 27231006 -200293572 + (TA)n Simple_repeat Simple_repeat 2 161 0 2015 132 0 0 chr3 27231007 27231288 -200293290 - AluSx SINE Alu -31 281 1 1548 178 16 13 chr3 27231288 27231595 -200292983 - L1MB3 LINE L1 -743 5403 5115 1371 200 87 0 chr3 27231595 27231870 -200292708 - AluJo SINE Alu -13 299 1 1548 178 16 13 chr3 27231870 27231952 -200292626 - L1MB3 LINE L1 -1031 5115 5035 600 163 0 0 chr3 27231953 27232051 -200292527 - AluSg/x SINE Alu -1 308 211 2427 88 13 0 chr3 27232062 27232368 -200292210 - AluSg SINE Alu 0 310 1 1084 208 4 4 chr3 27232379 27232605 -200291973 - L1MB3 LINE L1 -1127 5019 4794 540 197 34 8 chr3 27232603 27232720 -200291858 - L1MB8 LINE L1 -591 5593 5474 * 1804 110 0 4 chr3 27232732 27232986 -200291592 - L1MA6 LINE L1 0 6300 6048 181 292 45 22 chr3 27233165 27233254 -200291324 + MIR SINE MIR 82 172 -90 1586 198 24 89 chr3 27234470 27234927 -200289651 - MLT1C LTR MaLR 0 467 43 2074 120 10 7 chr3 27234927 27235228 -200289350 - AluSx SINE Alu -10 302 1 1586 198 24 89 chr3 27235228 27235264 -200289314 - MLT1C LTR MaLR -424 43 6 852 158 56 64 chr3 27235269 27235535 -200289043 - MER33 DNA MER1_type -60 264 1 2097 105 0 24 chr3 27236183 27236478 -200288100 - AluSx SINE Alu 0 312 25 2263 122 3 0 chr3 27236512 27236823 -200287755 - AluSx SINE Alu 0 312 1 748 243 188 59 chr3 27236847 27237251 -200287327 + L2 LINE L2 2858 3313 0 1983 188 55 66 chr3 27237547 27238037 -200286541 - MER34B LTR ERV1 0 565 80 2320 105 0 16 chr3 27238037 27238352 -200286226 - AluSg SINE Alu 0 310 1 1983 188 55 66 chr3 27238352 27238421 -200286157 - MER34B LTR ERV1 -485 80 12 2533 68 3 0 chr3 27238821 27239130 -200285448 - AluY SINE Alu -1 310 1 2003 126 7 3 chr3 27239254 27239555 -200285023 + AluSx SINE Alu 2 303 -9 882 183 91 37 chr3 27239575 27239820 -200284758 - MER33 DNA MER1_type -71 253 1 204 125 0 0 chr3 27242248 27242280 -200282298 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 283 249 67 79 chr3 27242632 27242797 -200281781 + L1MC/D LINE L1 5605 5767 -2041 724 255 70 15 chr3 27242868 27243068 -200281510 + MIR SINE MIR 46 256 -6 2481 80 0 0 chr3 27243512 27243813 -200280765 + AluSg SINE Alu 1 301 -9 2522 162 85 21 chr3 27243829 27244311 -200280267 - MER21B LTR ERV1 -21 842 330 968 86 43 7 chr3 27244314 27244454 -200280124 + AluSg/x SINE Alu 156 300 -12 641 199 40 163 chr3 27244480 27244756 -200279822 - MER21B LTR ERV1 -621 242 1 358 277 78 18 chr3 27245071 27245237 -200279341 - L1MC5 LINE L1 -32 7929 7754 186 326 94 72 chr3 27245670 27245726 -200278852 + MIR3 SINE MIR 10 63 -145 795 232 0 18 chr3 27245726 27245894 -200278684 + FRAM SINE Alu 2 166 0 186 326 94 72 chr3 27245894 27245975 -200278603 + MIR3 SINE MIR 63 150 -58 1019 147 220 5 chr3 27245975 27246240 -200278338 + MER33 DNA MER1_type 1 362 -1 195 158 118 118 chr3 27247669 27247745 -200276833 + L2 LINE L2 3190 3265 -7 250 268 155 63 chr3 27248120 27248262 -200276316 + MIR SINE MIR 37 191 -71 803 210 48 0 chr3 27248331 27248498 -200276080 + FAM SINE Alu 1 175 0 1814 133 14 29 chr3 27248897 27249175 -200275403 + AluSx SINE Alu 1 274 -38 2141 76 25 4 chr3 27249175 27249475 -200275103 - AluSg SINE Alu 0 306 1 656 133 11 0 chr3 27249825 27249915 -200274663 + FLAM_C SINE Alu 33 123 -20 231 281 0 62 chr3 27250044 27250140 -200274438 + L1MEc LINE L1 2 91 -6305 1596 249 23 42 chr3 27250142 27250619 -200273959 + L1MEc LINE L1 293 760 -5636 985 254 82 58 chr3 27250624 27251037 -200273541 + MLT1C LTR MaLR 45 467 0 548 253 44 0 chr3 27251037 27251195 -200273383 + L1MEc LINE L1 818 982 -5414 4757 180 48 14 chr3 27251207 27252246 -200272332 + L1 LINE L1 2782 3856 -2290 735 183 0 0 chr3 27252246 27252366 -200272212 + U4 snRNA snRNA 1 120 -25 765 184 19 6 chr3 27252368 27252526 -200272052 + L1 LINE L1 3846 4005 -2141 508 197 23 38 chr3 27252527 27252659 -200271919 + MSTB1 LTR MaLR 1 130 -302 225 227 0 0 chr3 27252648 27252692 -200271886 + U4 snRNA snRNA 77 120 -25 * 834 175 12 12 chr3 27252694 27252854 -200271724 + L1MA4A LINE L1 3846 4005 -2141 554 171 29 9 chr3 27252855 27252960 -200271618 + MSTB1 LTR MaLR 1 107 -325 2175 151 48 10 chr3 27252960 27253357 -200271221 + L1MA4A LINE L1 5634 6045 -258 961 114 0 8 chr3 27253359 27253490 -200271088 + AluSg SINE Alu 3 132 -178 2238 108 0 0 chr3 27253491 27253786 -200270792 + AluSx SINE Alu 1 295 -17 1648 137 19 0 chr3 27253786 27254042 -200270536 + L1MA4 LINE L1 6033 6293 -7 2230 102 7 0 chr3 27254525 27254819 -200269759 - AluSc SINE Alu -13 296 1 2223 93 10 32 chr3 27254820 27255132 -200269446 - AluSx SINE Alu -7 305 1 255 337 31 48 chr3 27255567 27255734 -200268844 + MIR SINE MIR 19 192 -62 1208 183 24 9 chr3 27257867 27258080 -200266498 + Tigger3b DNA MER2_type 1 216 -1015 1157 73 0 0 chr3 27258080 27258217 -200266361 + AluSq/x SINE Alu 1 137 -176 2375 81 0 3 chr3 27258219 27258514 -200266064 + AluSg SINE Alu 4 297 -13 5388 113 58 72 chr3 27258514 27258903 -200265675 + Tigger3b DNA MER2_type 202 595 -2433 2281 88 0 26 chr3 27258903 27259211 -200265367 + AluSx SINE Alu 1 300 -12 5388 113 58 72 chr3 27259211 27259865 -200264713 + Tigger3b DNA MER2_type 595 1231 0 1783 168 0 13 chr3 27260267 27260570 -200264008 + AluJb SINE Alu 1 299 -13 2273 94 7 10 chr3 27260586 27260893 -200263685 - AluSp SINE Alu -7 306 1 25 31 0 0 chr3 27261156 27261188 -200263390 + AT_rich Low_complexity Low_complexity 1 32 0 579 86 0 0 chr3 27261268 27261338 -200263240 + AluSp/q SINE Alu 197 266 -47 1938 134 16 10 chr3 27261406 27261713 -200262865 + AluSx SINE Alu 1 309 -3 576 101 18 83 chr3 27261831 27261940 -200262638 + MER2 DNA MER2_type 4 105 -240 1294 155 104 20 chr3 27261956 27262207 -200262371 - AluJo SINE Alu -40 272 1 1057 121 0 0 chr3 27262221 27262370 -200262208 - AluSg/x SINE Alu -15 295 147 240 160 0 0 chr3 27262371 27262421 -200262157 - LTR66 LTR ERVL -166 444 395 * 243 133 0 0 chr3 27262387 27262432 -200262146 + LTR66 LTR ERVL 395 439 -171 315 71 0 0 chr3 27262432 27262474 -200262104 + (CA)n Simple_repeat Simple_repeat 2 43 0 908 102 8 8 chr3 27262483 27262611 -200261967 - AluSq/x SINE Alu -183 130 3 556 193 104 47 chr3 27262613 27262825 -200261753 + MER2 DNA MER2_type 121 344 -1 2405 80 3 0 chr3 27262928 27263228 -200261350 + AluSp SINE Alu 1 301 -12 2137 102 13 0 chr3 27263734 27264038 -200260540 + AluSp SINE Alu 5 312 -1 942 154 13 13 chr3 27264049 27264205 -200260373 + FRAM SINE Alu 3 158 -8 358 240 0 1 chr3 27264207 27264289 -200260289 + MIR SINE MIR 71 152 -56 1792 182 3 0 chr3 27264621 27264917 -200259661 + AluJo SINE Alu 1 297 -15 22 0 0 0 chr3 27264918 27264940 -200259638 + AT_rich Low_complexity Low_complexity 1 22 0 324 248 62 105 chr3 27265408 27265531 -200259047 - L1MC5 LINE L1 -36 7925 7812 1960 133 11 0 chr3 27265531 27265836 -200258742 - AluSx SINE Alu 0 308 1 324 248 62 105 chr3 27265836 27265921 -200258657 - L1MC5 LINE L1 -149 7812 7725 2220 82 7 10 chr3 27265962 27266285 -200258293 + AluSp SINE Alu 1 313 0 200 284 108 0 chr3 27266287 27266361 -200258217 - L2 LINE L2 -31 3241 3160 283 264 0 91 chr3 27266377 27266487 -200258091 - L3 LINE CR1 -893 684 585 24 0 0 0 chr3 27266697 27266721 -200257857 + AT_rich Low_complexity Low_complexity 1 24 0 2299 106 0 0 chr3 27266958 27267261 -200257317 + AluSx SINE Alu 1 303 -9 186 43 0 0 chr3 27267265 27267288 -200257290 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 344 281 0 0 chr3 27267584 27267666 -200256912 + (TGG)n Simple_repeat Simple_repeat 3 84 0 255 170 0 0 chr3 27268254 27268301 -200256277 + (TA)n Simple_repeat Simple_repeat 1 47 0 338 254 0 44 chr3 27268303 27268417 -200256161 - L1MC4 LINE L1 -1320 6722 6614 * 364 211 0 53 chr3 27268326 27268421 -200256157 + L1MC4 LINE L1 6614 6703 -1339 1624 150 0 89 chr3 27268440 27268767 -200255811 + AluJo SINE Alu 2 299 -13 260 250 125 11 chr3 27269173 27269261 -200255317 + L2 LINE L2 2287 2384 -930 1054 277 101 9 chr3 27269268 27269780 -200254798 + MLT2E LTR ERVL 21 628 0 2064 111 7 0 chr3 27269862 27270151 -200254427 - AluSx SINE Alu -21 291 1 289 345 135 13 chr3 27270155 27270459 -200254119 + L2 LINE L2 2520 2860 -454 1869 166 0 3 chr3 27270601 27270896 -200253682 + AluJb SINE Alu 1 294 -18 257 154 64 0 chr3 27270896 27271006 -200253572 + (TA)n Simple_repeat Simple_repeat 2 118 0 30 59 0 0 chr3 27271374 27271425 -200253153 + AT_rich Low_complexity Low_complexity 1 51 0 225 263 0 0 chr3 27271583 27271659 -200252919 - L1ME3 LINE L1 0 6162 6087 343 299 32 63 chr3 27271689 27271704 -200252874 - L1MC4 LINE L1 -1854 5954 5940 2139 144 0 0 chr3 27271704 27272009 -200252569 - AluSx SINE Alu -7 305 1 343 299 32 63 chr3 27272009 27272214 -200252364 - L1MC4 LINE L1 -1868 5940 5741 373 274 152 30 chr3 27272254 27272491 -200252087 + L1M4 LINE L1 4280 4545 -1601 2247 101 0 0 chr3 27272491 27272801 -200251777 + AluSx SINE Alu 2 311 0 324 249 41 96 chr3 27272817 27273014 -200251564 + L1M4 LINE L1 5176 5361 -785 21 36 0 0 chr3 27273477 27273505 -200251073 + AT_rich Low_complexity Low_complexity 1 28 0 2482 80 0 0 chr3 27273694 27273994 -200250584 + AluSg SINE Alu 1 300 -10 225 267 47 0 chr3 27274138 27274224 -200250354 + L1MC4 LINE L1 6614 6703 -1339 * 232 258 0 43 chr3 27274162 27274255 -200250323 - L1MC4 LINE L1 -1339 6703 6615 835 178 13 19 chr3 27274394 27274551 -200250027 - AluSq SINE Alu -156 157 2 228 133 156 0 chr3 27274552 27274597 -200249981 - Charlie5 DNA MER1_type -204 2408 2357 1070 168 16 14 chr3 27274606 27274841 -200249737 - Charlie5 DNA MER1_type -2488 124 1 1133 190 19 5 chr3 27274908 27275112 -200249466 + MER7A DNA MER2_type 14 218 -128 1391 164 0 0 chr3 27275112 27275320 -200249258 + MER1B DNA MER1_type 1 208 -89 653 241 94 49 chr3 27275453 27275579 -200248999 + L1ME3 LINE L1 5879 5998 -164 2057 115 7 3 chr3 27275579 27275874 -200248704 - AluSx SINE Alu -16 296 1 653 241 94 49 chr3 27275874 27275992 -200248586 + L1ME3 LINE L1 5998 6134 -28 913 211 72 5 chr3 27276005 27276214 -200248364 - AluJo SINE Alu -3 309 87 2668 141 16 0 chr3 27276672 27277056 -200247522 + MLT1B LTR MaLR 1 390 0 394 200 56 11 chr3 27277221 27277311 -200247267 + MER58B DNA MER1_type 247 340 -1 1728 159 3 30 chr3 27278307 27278608 -200245970 + AluJo SINE Alu 7 299 -13 2235 109 0 3 chr3 27278633 27278927 -200245651 + AluSg SINE Alu 2 294 -16 27 0 0 0 chr3 27279068 27279095 -200245483 + AT_rich Low_complexity Low_complexity 1 27 0 273 285 100 31 chr3 27279415 27279545 -200245033 - L2 LINE L2 -254 3059 2921 260 168 208 40 chr3 27280434 27280535 -200244043 - L1MC4 LINE L1 -9 8033 7916 384 172 13 52 chr3 27280637 27280737 -200243841 - L1ME2 LINE L1 0 6164 6071 213 154 0 0 chr3 27282028 27282067 -200242511 + C-rich Low_complexity Low_complexity 4 42 0 9768 214 25 55 chr3 27282436 27283730 -200240848 - L1M2 LINE L1 -491 5800 4469 2126 134 0 3 chr3 27283730 27284028 -200240550 - AluSg SINE Alu -13 297 1 9768 214 25 55 chr3 27284028 27284194 -200240384 - L1M2 LINE L1 -1822 4469 4300 666 186 50 36 chr3 27284194 27284334 -200240244 + FLAM_C SINE Alu 2 143 0 9768 214 25 55 chr3 27284334 27285067 -200239511 - L1M2 LINE L1 -1991 4300 3547 1523 180 16 68 chr3 27285067 27285378 -200239200 - AluJo SINE Alu -15 297 3 9768 214 25 55 chr3 27285378 27286156 -200238422 - L1M2 LINE L1 -2744 3547 2748 528 104 26 0 chr3 27286156 27286233 -200238345 - MADE1 DNA Mariner -1 79 1 9768 214 25 55 chr3 27286233 27286546 -200238032 - L1M2 LINE L1 -3543 2748 2427 1808 166 0 3 chr3 27286546 27286865 -200237713 - AluSx SINE Alu 0 318 1 9768 214 25 55 chr3 27286865 27287032 -200237546 - L1M2 LINE L1 -3864 2427 2374 2223 116 3 0 chr3 27287032 27287335 -200237243 - AluSg SINE Alu -6 304 1 9768 214 25 55 chr3 27287335 27287387 -200237191 - L1M2 LINE L1 -3917 2374 2322 1324 240 64 4 chr3 27287456 27287824 -200236754 - LTR16C LTR ERVL -4 487 68 241 323 75 11 chr3 27288142 27288235 -200236343 - L2 LINE L2 -31 3241 3143 389 246 84 66 chr3 27288328 27288421 -200236157 + MIR SINE MIR 29 128 -134 1999 136 62 46 chr3 27288421 27288790 -200235788 - THE1C LTR MaLR 0 375 1 389 246 84 66 chr3 27288790 27288863 -200235715 + MIR SINE MIR 128 198 -64 1134 303 35 25 chr3 27289995 27290477 -200234101 - L2 LINE L2 -1 3312 2826 266 106 21 0 chr3 27291282 27291329 -200233249 + (GA)n Simple_repeat Simple_repeat 1 48 0 2007 138 3 16 chr3 27291863 27292168 -200232410 - AluSx SINE Alu -11 301 1 1709 160 3 7 chr3 27292282 27292564 -200232014 + AluSx SINE Alu 3 283 -29 227 91 0 73 chr3 27293646 27293701 -200230877 + (CCCCCT)n Simple_repeat Simple_repeat 4 54 0 598 220 180 7 chr3 27294854 27295004 -200229574 - MER5A DNA MER1_type 0 189 14 741 107 45 0 chr3 27295248 27295360 -200229218 + L1PB1 LINE L1 6032 6148 -3 22 0 0 0 chr3 27295450 27295472 -200229106 + AT_rich Low_complexity Low_complexity 1 22 0 1752 161 10 23 chr3 27295712 27296011 -200228567 - AluJb SINE Alu -17 295 1 298 239 0 15 chr3 27296031 27296098 -200228480 - L2 LINE L2 0 3313 3248 25 0 0 0 chr3 27296529 27296554 -200228024 + AT_rich Low_complexity Low_complexity 1 25 0 228 143 0 0 chr3 27296870 27296912 -200227666 + (A)n Simple_repeat Simple_repeat 1 42 0 455 126 5 3 chr3 27297005 27297218 -200227360 + AluJo SINE Alu 1 277 -35 219 36 0 0 chr3 27297221 27297249 -200227329 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 205 278 40 79 chr3 27297413 27297539 -200227039 + L2 LINE L2 2930 3050 -222 1936 155 0 10 chr3 27297820 27298124 -200226454 - AluJb SINE Alu -11 301 1 955 160 0 0 chr3 27298167 27298311 -200226267 - FRAM SINE Alu -30 146 3 498 332 108 22 chr3 27298486 27298709 -200225869 + MIR SINE MIR 2 243 -19 353 217 158 42 chr3 27298745 27298865 -200225713 + MIR SINE MIR 19 152 -110 1682 134 74 11 chr3 27299096 27299365 -200225213 + AluJb SINE Alu 1 286 -26 1259 202 0 18 chr3 27299592 27299815 -200224763 + MER20 DNA MER1_type 1 219 0 1334 138 121 86 chr3 27299881 27300171 -200224407 - AluJo SINE Alu -12 300 1 376 270 66 15 chr3 27300248 27300385 -200224193 - L1MB8 LINE L1 -1 6177 6034 2183 110 0 26 chr3 27300406 27300715 -200223863 - AluSx SINE Alu -11 301 1 283 241 53 100 chr3 27301625 27301676 -200222902 + MIR SINE MIR 56 108 -154 2281 71 32 0 chr3 27301676 27301959 -200222619 - AluSc SINE Alu -17 292 1 283 241 53 100 chr3 27301959 27302077 -200222501 + MIR SINE MIR 108 217 -45 264 170 38 19 chr3 27302215 27302268 -200222310 - MIR SINE MIR -64 144 91 1639 155 0 0 chr3 27302716 27302967 -200221611 + AluSx SINE Alu 1 251 -61 277 75 38 0 chr3 27304209 27304262 -200220316 + GA-rich Low_complexity Low_complexity 2 56 0 1044 157 194 12 chr3 27306103 27306383 -200218195 + MER33 DNA MER1_type 1 318 -6 1952 129 43 0 chr3 27306480 27306760 -200217818 + AluSx SINE Alu 1 292 -20 324 243 0 0 chr3 27306940 27307010 -200217568 - L1ME LINE L1 -310 5811 5742 1906 174 3 0 chr3 27307843 27308154 -200216424 - AluJo SINE Alu 0 312 1 2325 116 3 0 chr3 27309318 27309629 -200214949 - AluSx SINE Alu 0 312 1 1720 142 3 77 chr3 27309937 27310274 -200214304 + AluJo SINE Alu 1 312 0 258 304 32 96 chr3 27310421 27310546 -200214032 + MIR SINE MIR 16 132 -76 225 0 0 0 chr3 27310882 27310907 -200213671 + (CA)n Simple_repeat Simple_repeat 2 26 0 264 128 0 167 chr3 27311282 27311384 -200213194 - Charlie5 DNA MER1_type -27 2585 2501 225 154 0 0 chr3 27311397 27311436 -200213142 + (TA)n Simple_repeat Simple_repeat 2 40 0 378 0 0 0 chr3 27311981 27312023 -200212555 + (TAGA)n Simple_repeat Simple_repeat 2 43 0 1655 184 0 4 chr3 27312043 27312310 -200212268 - AluJo SINE Alu -41 271 6 2046 142 0 7 chr3 27313096 27313399 -200211179 + AluJb SINE Alu 11 311 -1 781 233 10 44 chr3 27313848 27314054 -200210524 - MIR SINE MIR -31 231 33 207 214 0 0 chr3 27316769 27316811 -200207767 + T-rich Low_complexity Low_complexity 1 42 0 232 258 0 30 chr3 27316833 27316899 -200207679 + MER5B DNA MER1_type 114 177 -1 864 244 42 0 chr3 27316930 27317123 -200207455 + MIR SINE MIR 51 251 -11 381 182 131 20 chr3 27317132 27317231 -200207347 + MIR SINE MIR 146 255 -7 1009 258 34 7 chr3 27318323 27318621 -200205957 - L1ME1 LINE L1 -8 6158 5853 722 220 0 39 chr3 27319109 27319291 -200205287 - MER5B DNA MER1_type -3 175 1 359 304 80 0 chr3 27319453 27319591 -200204987 - MIR SINE MIR -79 183 35 283 172 47 0 chr3 27320592 27320656 -200203922 - L1MC4 LINE L1 0 8042 7976 262 206 9 93 chr3 27320655 27320762 -200203816 - L1MC4 LINE L1 -23 8019 7922 * 323 168 32 13 chr3 27320862 27321017 -200203561 + (TA)n Simple_repeat Simple_repeat 2 159 0 330 26 0 0 chr3 27321030 27321069 -200203509 + (TG)n Simple_repeat Simple_repeat 2 40 0 216 203 0 34 chr3 27321088 27321134 -200203444 + GA-rich Low_complexity Low_complexity 2 47 -11 2208 99 0 29 chr3 27321134 27321446 -200203132 + AluSq SINE Alu 1 303 -10 216 203 0 34 chr3 27321446 27321458 -200203120 + GA-rich Low_complexity Low_complexity 47 58 0 258 100 50 0 chr3 27321460 27321520 -200203058 + (TA)n Simple_repeat Simple_repeat 1 63 0 264 262 33 8 chr3 27321588 27321710 -200202868 - L1MC4 LINE L1 -231 7811 7687 1311 209 36 56 chr3 27321716 27322160 -200202418 - L1MC4 LINE L1 -614 7428 6994 677 184 31 126 chr3 27322835 27322913 -200201665 - MLT1H LTR MaLR -318 231 147 2164 144 0 0 chr3 27322913 27323225 -200201353 - AluSx SINE Alu 0 312 1 677 184 31 126 chr3 27323225 27323401 -200201177 - MLT1H LTR MaLR -402 147 1 275 241 86 17 chr3 27323566 27323682 -200200896 - MER117 DNA MER1_type -1 196 73 24 77 0 0 chr3 27324316 27324368 -200200210 + AT_rich Low_complexity Low_complexity 1 52 0 191 170 21 0 chr3 27324380 27324427 -200200151 + (TA)n Simple_repeat Simple_repeat 2 49 0 495 0 0 0 chr3 27324430 27324485 -200200093 + (TG)n Simple_repeat Simple_repeat 2 56 0 243 348 45 25 chr3 27324742 27325182 -200199396 + L1M4 LINE L1 2492 2940 -3206 901 244 37 94 chr3 27325750 27326083 -200198495 - L1MC4 LINE L1 0 8042 7759 859 231 116 5 chr3 27326083 27326282 -200198296 + MER58A DNA MER1_type 4 224 0 901 244 37 94 chr3 27326282 27326567 -200198011 - L1MC4 LINE L1 -283 7759 7459 2461 159 24 14 chr3 27326919 27327341 -200197237 - MSTB LTR MaLR 0 426 1 367 241 0 0 chr3 27327386 27327465 -200197113 - MER63 DNA MER1_type -1 1060 982 2174 56 66 3 chr3 27327743 27328031 -200196547 + AluY SINE Alu 1 306 -5 1026 235 9 0 chr3 27328126 27328347 -200196231 + MER58A DNA MER1_type 1 223 -1 209 267 0 0 chr3 27328436 27328481 -200196097 + (TG)n Simple_repeat Simple_repeat 2 46 0 2375 89 7 0 chr3 27329243 27329545 -200195033 + AluSp SINE Alu 1 304 -9 2227 117 30 21 chr3 27330400 27330734 -200193844 - MER1B DNA MER1_type 0 337 1 2234 118 10 0 chr3 27331427 27331731 -200192847 + AluSq SINE Alu 1 307 -6 909 177 29 106 chr3 27331886 27332074 -200192504 - MER33 DNA MER1_type -2296 289 133 2073 143 0 3 chr3 27332074 27332375 -200192203 - AluSx SINE Alu -12 300 1 909 177 29 106 chr3 27332375 27332497 -200192081 - MER33 DNA MER1_type -2452 133 3 959 135 13 26 chr3 27332662 27332844 -200191734 - AluSg/x SINE Alu 0 312 137 314 195 11 0 chr3 27333557 27333644 -200190934 + (TG)n Simple_repeat Simple_repeat 2 89 0 2346 93 3 0 chr3 27333715 27334017 -200190561 - AluSq SINE Alu -10 303 1 1847 162 13 13 chr3 27334257 27334566 -200190012 - AluJo SINE Alu -3 309 1 2332 92 7 0 chr3 27334795 27335088 -200189490 + AluSp SINE Alu 1 295 -18 28 29 0 0 chr3 27335727 27335762 -200188816 + AT_rich Low_complexity Low_complexity 1 35 0 478 263 77 0 chr3 27336035 27336191 -200188387 - MER3 DNA MER1_type -30 179 12 254 280 68 8 chr3 27336206 27336324 -200188254 - L1MC/D LINE L1 -1980 5828 5704 315 303 73 58 chr3 27336335 27336975 -200187603 - L1MC/D LINE L1 -460 5661 4993 2058 71 0 43 chr3 27337087 27337399 -200187179 - AluSc SINE Alu 0 311 12 965 172 146 8 chr3 27337494 27337755 -200186823 - MER33 DNA MER1_type -22 302 6 899 326 64 64 chr3 27337863 27338076 -200186502 + L3 LINE CR1 933 1145 -432 2513 70 0 0 chr3 27338076 27338375 -200186203 + AluY SINE Alu 1 299 -12 899 326 64 64 chr3 27338375 27338805 -200185773 + L3 LINE CR1 1144 1576 -1 239 189 0 38 chr3 27339918 27339971 -200184607 + L2 LINE L2 3263 3313 0 1756 139 57 7 chr3 27340244 27340524 -200184054 - AluJb SINE Alu -18 294 1 705 165 17 0 chr3 27340562 27340677 -200183901 + FLAM_C SINE Alu 1 117 -26 304 271 100 0 chr3 27340785 27340925 -200183653 - L1ME4a LINE L1 -4 6117 5964 1726 151 3 68 chr3 27341593 27341917 -200182661 - AluJo SINE Alu -9 303 1 34 42 0 0 chr3 27342295 27342343 -200182235 + AT_rich Low_complexity Low_complexity 1 48 0 282 211 0 0 chr3 27342838 27342890 -200181688 + L2 LINE L2 3214 3265 -7 1898 148 24 3 chr3 27343197 27343494 -200181084 - AluSx SINE Alu -9 303 1 205 292 0 0 chr3 27344365 27344413 -200180165 + L2 LINE L2 3251 3298 -15 260 303 0 0 chr3 27345556 27345622 -200178956 + (TG)n Simple_repeat Simple_repeat 1 66 0 4452 143 24 1 chr3 27345991 27346710 -200177868 + L1PA16 LINE L1 5416 6150 -16 2542 71 0 3 chr3 27346965 27347276 -200177302 - AluY SINE Alu -1 310 1 1237 183 34 52 chr3 27347368 27347474 -200177104 + MER33 DNA MER1_type 3 109 -2476 2218 132 0 3 chr3 27347474 27347784 -200176794 - AluSx SINE Alu -3 309 1 1237 183 34 52 chr3 27347784 27348005 -200176573 + MER33 DNA MER1_type 109 324 0 216 0 0 0 chr3 27348243 27348267 -200176311 + (T)n Simple_repeat Simple_repeat 1 24 0 278 314 29 39 chr3 27349422 27349524 -200175054 - MIR SINE MIR -63 145 45 255 256 0 39 chr3 27349727 27349805 -200174773 - MER116 DNA Mariner 0 80 6 218 324 101 53 chr3 27349988 27350235 -200174343 - MIR SINE MIR -1 261 3 1466 158 5 0 chr3 27351986 27352208 -200172370 + AluJo SINE Alu 85 307 -5 257 284 14 27 chr3 27354744 27354818 -200169760 + L3 LINE CR1 1503 1575 -2 22 0 0 0 chr3 27355716 27355738 -200168840 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 27356927 27356948 -200167630 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 27357063 27357084 -200167494 + AT_rich Low_complexity Low_complexity 1 21 0 375 186 0 0 chr3 27358844 27358946 -200165632 + (TA)n Simple_repeat Simple_repeat 2 103 0 1741 157 91 0 chr3 27359187 27359505 -200165073 - MER7A DNA MER2_type 0 346 2 1113 162 26 64 chr3 27359729 27359963 -200164615 + AluJb SINE Alu 84 312 0 2245 106 3 0 chr3 27360273 27360566 -200164012 + AluSq SINE Alu 1 294 -19 1977 199 90 37 chr3 27360568 27360616 -200163962 - L1ME2 LINE L1 0 6164 6120 846 111 0 24 chr3 27360616 27360742 -200163836 + FLAM_C SINE Alu 1 123 -10 1977 199 90 37 chr3 27360742 27361240 -200163338 - L1ME2 LINE L1 -44 6120 5589 292 344 65 65 chr3 27361251 27361559 -200163019 - L3 LINE CR1 -795 782 475 993 57 16 0 chr3 27361693 27361815 -200162763 - AluY SINE Alu -18 293 170 469 274 57 99 chr3 27362095 27362358 -200162220 - MIR SINE MIR -8 254 3 189 309 90 64 chr3 27363088 27363276 -200161302 - L2 LINE L2 -214 3058 2866 600 252 88 17 chr3 27363420 27363658 -200160920 + L1MEd LINE L1 3 257 -5862 648 304 47 62 chr3 27363758 27364097 -200160481 + L1MEd LINE L1 440 773 -5346 355 215 63 51 chr3 27364102 27364260 -200160318 + L1MEd LINE L1 931 1090 -5029 343 280 65 0 chr3 27364272 27364379 -200160199 + L2 LINE L2 3195 3308 -5 270 202 211 10 chr3 27364399 27364503 -200160075 + L1MEd LINE L1 1133 1257 -4862 1694 293 48 47 chr3 27364582 27365576 -200159002 + L1ME2 LINE L1 116 1110 -5286 3257 228 110 37 chr3 27365604 27365929 -200158649 + L1ME2 LINE L1 2965 3265 -2950 3237 124 18 6 chr3 27365929 27366437 -200158141 - MER75 DNA T2_type 0 514 1 3257 228 110 37 chr3 27366437 27367548 -200157030 + L1ME2 LINE L1 3265 4506 -1709 2207 148 80 2 chr3 27367715 27368114 -200156464 - MSTB1 LTR MaLR -2 430 1 282 230 72 50 chr3 27368368 27368468 -200156110 + L1MB3 LINE L1 3643 3748 -2398 2240 101 0 3 chr3 27368468 27368764 -200155814 + AluSx SINE Alu 1 295 -17 282 230 72 50 chr3 27368764 27368802 -200155776 + L1MB3 LINE L1 3748 3784 -2362 790 202 118 0 chr3 27368811 27369039 -200155539 + L1MB3 LINE L1 5114 5368 -778 * 2030 161 55 5 chr3 27369037 27369422 -200155156 + L1MB3 LINE L1 5738 6141 -42 1271 171 92 61 chr3 27369422 27369715 -200154863 + AluJo SINE Alu 1 302 -10 399 306 61 10 chr3 27369835 27370031 -200154547 + L1P LINE L1 4852 5057 -1089 453 263 118 59 chr3 27370196 27370740 -200153838 + L1ME2 LINE L1 5383 5958 -275 551 138 21 0 chr3 27370978 27371072 -200153506 - MER58 DNA MER1_type 0 2420 2325 512 198 6 185 chr3 27371067 27371224 -200153354 - MER58 DNA MER1_type -239 147 19 * 659 154 8 32 chr3 27371220 27371343 -200153235 + MER3 DNA MER1_type 8 127 -82 2160 48 44 11 chr3 27371343 27371616 -200152962 - AluY SINE Alu -14 297 16 2268 86 21 0 chr3 27372820 27373111 -200151467 + AluSp SINE Alu 1 297 -16 29 60 0 0 chr3 27373183 27373233 -200151345 + AT_rich Low_complexity Low_complexity 1 50 0 614 279 77 6 chr3 27373918 27374101 -200150477 - MIR SINE MIR 0 262 67 724 208 169 35 chr3 27374249 27374480 -200150098 + MIR SINE MIR 1 262 0 361 74 19 0 chr3 27375167 27375221 -200149357 - Alu SINE Alu -247 55 1 701 274 120 102 chr3 27375480 27375981 -200148597 + L2 LINE L2 2804 3313 0 3050 123 21 58 chr3 27376408 27376656 -200147922 - L1MA6 LINE L1 -160 6140 5884 2522 73 0 0 chr3 27376656 27376958 -200147620 - AluSc SINE Alu 0 309 8 3050 123 21 58 chr3 27376958 27377278 -200147300 - L1MA6 LINE L1 -416 5884 5593 568 208 108 0 chr3 27377278 27377398 -200147180 - AluJb SINE Alu -175 137 5 2007 157 32 8 chr3 27377401 27377939 -200146639 - L1MA6 LINE L1 -691 5609 5066 312 284 24 47 chr3 27378104 27378231 -200146347 + L2 LINE L2 3190 3313 0 195 395 12 0 chr3 27378408 27378494 -200146084 - L2 LINE L2 -674 2640 2554 313 202 161 40 chr3 27378539 27378663 -200145915 - L1MC5 LINE L1 -68 7893 7755 484 188 117 104 chr3 27378664 27378904 -200145674 - L2 LINE L2 -770 2544 2302 674 268 6 11 chr3 27379029 27379208 -200145370 + MER5B DNA MER1_type 1 178 0 520 244 165 37 chr3 27379231 27379395 -200145183 + MER5A DNA MER1_type 3 187 -2 262 350 57 16 chr3 27379395 27379583 -200144995 + L2 LINE L2 2909 3104 -168 7514 30 0 1 chr3 27379956 27381388 -200143190 - L1PA3 LINE L1 0 6155 4717 828 113 0 0 chr3 27381388 27381503 -200143075 - AluY SINE Alu -78 233 119 331 259 211 24 chr3 27382558 27382776 -200141802 - MER102a DNA MER1_type -3 327 71 2068 117 13 7 chr3 27383701 27384000 -200140578 + AluSx SINE Alu 1 301 -11 249 337 21 11 chr3 27384190 27384285 -200140293 + MIR SINE MIR 44 139 -69 30 45 0 0 chr3 27384600 27384644 -200139934 + AT_rich Low_complexity Low_complexity 1 44 0 243 0 0 0 chr3 27385385 27385412 -200139166 + (T)n Simple_repeat Simple_repeat 1 27 0 23 33 0 0 chr3 27387040 27387070 -200137508 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr3 27388669 27388700 -200135878 + AT_rich Low_complexity Low_complexity 1 31 0 330 258 78 12 chr3 27388856 27389023 -200135555 - L1M4 LINE L1 -3639 2507 2330 270 287 19 9 chr3 27389044 27389152 -200135426 + L1MC/D LINE L1 5703 5811 -1997 212 147 0 0 chr3 27389211 27389245 -200135333 + (GAAAA)n Simple_repeat Simple_repeat 5 38 0 28 29 0 0 chr3 27390904 27390939 -200133639 + AT_rich Low_complexity Low_complexity 1 35 0 719 142 9 0 chr3 27390939 27391045 -200133533 - AluJb SINE Alu -20 292 186 1268 218 59 22 chr3 27391253 27391788 -200132790 - MER69 DNA AcHobo -4 2522 248 452 222 0 0 chr3 27391764 27391845 -200132733 - MER69 DNA AcHobo -2444 82 2 * 422 248 20 0 chr3 27392338 27392439 -200132139 - Charlie7 DNA MER1_type -381 2231 2129 26 0 0 0 chr3 27392439 27392465 -200132113 + AT_rich Low_complexity Low_complexity 1 26 0 7189 171 27 17 chr3 27392465 27393708 -200130870 - L1PA14 LINE L1 -2 6159 4871 1631 154 47 68 chr3 27393708 27394091 -200130487 + THE1C LTR MaLR 1 375 0 7189 171 27 17 chr3 27394091 27395101 -200129477 - L1PA14 LINE L1 -1290 4871 3872 4442 176 44 29 chr3 27395101 27396101 -200128477 - L1P LINE L1 -2102 4044 3030 877 242 161 27 chr3 27396218 27396285 -200128293 - Charlie7 DNA MER1_type -607 2005 1948 1888 166 3 13 chr3 27396285 27396592 -200127986 - AluJb SINE Alu -8 304 1 877 242 161 27 chr3 27396592 27396933 -200127645 - Charlie7 DNA MER1_type -664 1948 1542 831 266 47 63 chr3 27396981 27397112 -200127466 + LTR16A LTR ERVL 76 208 -242 4289 135 28 33 chr3 27397112 27397891 -200126687 + L1MA7 LINE L1 5517 6291 0 831 266 47 63 chr3 27397891 27398078 -200126500 + LTR16A LTR ERVL 208 389 -61 1396 163 0 13 chr3 27398105 27398344 -200126234 - AluJb SINE Alu -76 236 1 2349 245 46 24 chr3 27398451 27398643 -200125935 - Charlie7 DNA MER1_type -1134 1478 1292 2760 10 0 0 chr3 27398643 27398944 -200125634 - AluYa5 SINE Alu -10 301 1 2349 245 46 24 chr3 27398944 27399494 -200125084 - Charlie7 DNA MER1_type -1320 1292 720 220 70 47 23 chr3 27399641 27399684 -200124894 + CT-rich Low_complexity Low_complexity 2 45 0 * 384 59 0 0 chr3 27399683 27399734 -200124844 + (TCCCC)n Simple_repeat Simple_repeat 1 51 0 1257 166 100 44 chr3 27399734 27400005 -200124573 - AluSx SINE Alu -26 286 1 768 263 61 76 chr3 27400034 27400479 -200124099 + L1MEd LINE L1 586 1023 -5096 840 172 17 0 chr3 27400742 27400967 -200123611 + CT-rich Low_complexity Low_complexity 1 228 0 1785 151 29 0 chr3 27400971 27401243 -200123335 - AluJb SINE Alu -32 280 1 41 48 0 0 chr3 27401352 27401414 -200123164 + AT_rich Low_complexity Low_complexity 1 62 0 29 0 0 0 chr3 27401462 27401491 -200123087 + AT_rich Low_complexity Low_complexity 1 29 0 212 205 0 0 chr3 27401600 27401639 -200122939 + L3 LINE CR1 400 438 -1139 799 264 97 0 chr3 27401737 27401964 -200122614 - HsTC2c DNA Tc2 -17 712 464 594 227 180 26 chr3 27401985 27402179 -200122399 + MER58A DNA MER1_type 1 224 0 243 0 0 0 chr3 27402483 27402510 -200122068 + (T)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr3 27403220 27403249 -200121329 + AT_rich Low_complexity Low_complexity 1 29 0 481 231 56 28 chr3 27403296 27403439 -200121139 + MER113 DNA MER1_type? 159 305 -216 412 316 37 11 chr3 27403452 27403639 -200120939 + L1MC/D LINE L1 5600 5791 -2017 1781 154 4 11 chr3 27403662 27403942 -200120636 - AluJb SINE Alu -32 280 3 2304 103 0 22 chr3 27404047 27404366 -200120212 - AluSx SINE Alu 0 312 1 783 299 53 0 chr3 27404530 27404774 -200119804 + MIR SINE MIR 6 262 0 264 59 0 0 chr3 27405137 27405171 -200119407 + (TCCCC)n Simple_repeat Simple_repeat 1 34 0 2171 84 4 0 chr3 27405171 27405446 -200119132 - AluSp SINE Alu -37 276 1 302 323 0 19 chr3 27405469 27405630 -200118948 - MER112 DNA MER1_type -6 254 97 7681 17 8 0 chr3 27406124 27407521 -200117057 + L1PA3 LINE L1 4812 6215 0 236 297 76 21 chr3 27407670 27407815 -200116763 - L1ME4a LINE L1 -38 6083 5931 517 283 57 65 chr3 27407881 27408217 -200116361 - L1ME4a LINE L1 -496 5625 5293 7051 197 21 7 chr3 27408765 27411148 -200113430 + L1PA15 LINE L1 2 2079 -4770 2469 200 36 12 chr3 27411149 27413321 -200111257 + L1PA15 LINE L1 3771 5889 -979 197 32 0 32 chr3 27413321 27413352 -200111226 + (CAA)n Simple_repeat Simple_repeat 1 30 0 2469 200 36 12 chr3 27413352 27413376 -200111202 + L1PA15 LINE L1 5889 5911 -957 2469 141 20 0 chr3 27413376 27413779 -200110799 + L1PA15 LINE L1 6452 6862 -6 2469 200 36 12 chr3 27413779 27413943 -200110635 + L1PA15 LINE L1 5911 6070 -798 2216 99 30 0 chr3 27413943 27414246 -200110332 + AluSx SINE Alu 1 312 0 2469 200 36 12 chr3 27414246 27414376 -200110202 + L1PA15 LINE L1 6070 6862 -6 855 277 134 3 chr3 27414849 27415178 -200109400 + L2 LINE L2 949 1320 -1994 739 267 108 26 chr3 27415209 27415516 -200109062 + L2 LINE L2 1721 2052 -1262 397 362 71 18 chr3 27415560 27415955 -200108623 + L1M4 LINE L1 4099 4514 -1632 271 299 10 0 chr3 27416037 27416134 -200108444 + L1M4 LINE L1 4513 4610 -1536 713 209 13 67 chr3 27416205 27416430 -200108148 + L1MD3 LINE L1 7779 7991 -4 5200 135 7 15 chr3 27416430 27417524 -200107054 - L1PA16 LINE L1 -1 6480 5379 2800 87 0 13 chr3 27417524 27417904 -200106674 - THE1C LTR MaLR 0 375 1 5200 135 7 15 chr3 27417904 27418404 -200106174 - L1PA16 LINE L1 -1102 5379 4867 2533 150 26 12 chr3 27418404 27418823 -200105755 - MSTB LTR MaLR 0 426 2 7686 192 50 8 chr3 27418844 27418884 -200105694 - MSTB-int LTR MaLR -19 1632 1595 2394 95 3 0 chr3 27418884 27419190 -200105388 - AluSx SINE Alu -5 307 1 7686 192 50 8 chr3 27419190 27420715 -200103863 - MSTB-int LTR MaLR -56 1595 1 2490 160 24 5 chr3 27420715 27421133 -200103445 - MSTB LTR MaLR 0 426 1 732 181 10 60 chr3 27421134 27421333 -200103245 - L1 LINE L1 -1592 4554 4366 11236 123 14 57 chr3 27421333 27424272 -200100306 - L1PA16 LINE L1 -3539 2922 2 195 100 0 0 chr3 27424284 27424314 -200100264 + (TTG)n Simple_repeat Simple_repeat 2 31 0 9147 191 26 19 chr3 27424314 27426144 -200098434 - L1PA15-16 LINE L1 -3062 3787 1924 1945 135 14 17 chr3 27426144 27426441 -200098137 + AluJb SINE Alu 1 296 -16 9147 191 26 19 chr3 27426441 27427135 -200097443 - L1PA15-16 LINE L1 -4925 1924 1236 272 286 16 24 chr3 27427409 27427535 -200097043 + L1ME LINE L1 5687 5811 -310 2324 100 0 22 chr3 27428145 27428456 -200096122 - AluSc SINE Alu -5 304 1 30 27 0 0 chr3 27428684 27428721 -200095857 + AT_rich Low_complexity Low_complexity 1 37 0 185 0 40 0 chr3 27430025 27430050 -200094528 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 15630 27 1 0 chr3 27430066 27432679 -200091899 - L1PA3 LINE L1 -5 6150 3535 426 225 88 8 chr3 27433667 27433806 -200090772 + LTR28 LTR ERV1 1 167 -469 417 201 52 80 chr3 27433823 27433995 -200090583 + LTR1 LTR ERV1 102 415 -554 1646 191 152 101 chr3 27434003 27434640 -200089938 + LTR28 LTR ERV1 351 1020 0 15517 100 22 0 chr3 27435043 27438156 -200086422 - L1PA7 LINE L1 0 6154 2988 737 105 9 0 chr3 27438157 27438262 -200086316 - U6 snRNA snRNA -1 106 1 374 329 124 29 chr3 27438295 27438602 -200085976 - L2 LINE L2 -1069 2245 1910 4698 57 4 147 chr3 27438620 27439423 -200085155 + LTR12 LTR ERV1 1 688 0 13837 105 18 11 chr3 27439423 27442452 -200082126 + HERV9 LTR ERV1 1 3139 -5260 6021 87 12 8 chr3 27442459 27443321 -200081257 + HERV9 LTR ERV1 4080 4944 -3455 1831 105 64 38 chr3 27443322 27444019 -200080559 + Harlequin LTR ERV1 713 4405 -3380 1001 102 0 0 chr3 27443996 27444153 -200080425 + Harlequin LTR ERV1 1584 1740 -5156 * 5301 96 4 0 chr3 27444151 27444920 -200079658 + Harlequin LTR ERV1 7626 8397 -2 5545 59 0 34 chr3 27444923 27445635 -200078943 + LTR12 LTR ERV1 1 688 0 248 377 117 23 chr3 27445842 27446142 -200078436 - L2 LINE L2 -1634 1680 1353 721 183 15 0 chr3 27446185 27446316 -200078262 + AluJo/FLAM SINE Alu 1 133 -169 1278 115 0 11 chr3 27446319 27446502 -200078076 + AluY SINE Alu 1 181 -130 900 186 13 0 chr3 27446663 27446819 -200077759 - AluJb SINE Alu -22 290 133 347 226 195 18 chr3 27447480 27447532 -200077046 - MER5A DNA MER1_type -1 188 147 2261 109 3 0 chr3 27447532 27447834 -200076744 + AluSp SINE Alu 1 303 -10 347 226 195 18 chr3 27447834 27447906 -200076672 - MER5A DNA MER1_type -42 147 31 1562 168 3 67 chr3 27447991 27448306 -200076272 + AluJb SINE Alu 14 308 -4 2164 104 0 26 chr3 27448441 27448748 -200075830 - AluSq SINE Alu -10 303 5 267 367 39 16 chr3 27448786 27448914 -200075664 + MIR SINE MIR 67 197 -65 217 304 26 9 chr3 27449890 27450005 -200074573 + T-rich Low_complexity Low_complexity 2 118 0 1106 152 119 0 chr3 27450596 27450806 -200073772 + MER46A DNA MER2_type 1 235 -1 2329 64 14 14 chr3 27450829 27451124 -200073454 + AluY SINE Alu 1 295 -16 369 313 131 23 chr3 27451474 27451688 -200072890 + MIR SINE MIR 13 249 -13 23 78 0 0 chr3 27451807 27451858 -200072720 + AT_rich Low_complexity Low_complexity 1 51 0 319 239 0 22 chr3 27452687 27452779 -200071799 + L1ME2 LINE L1 5944 6033 -131 885 202 64 0 chr3 27452779 27452967 -200071611 + MER20 DNA MER1_type 1 200 -19 324 211 48 0 chr3 27452973 27453077 -200071501 + L1ME2 LINE L1 6047 6155 -9 243 0 0 0 chr3 27453192 27453219 -200071359 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1889 294 142 42 chr3 27453716 27454750 -200069828 - L2 LINE L2 0 3313 2384 1987 143 0 14 chr3 27454750 27455043 -200069535 - AluJo SINE Alu -23 289 1 1889 294 142 42 chr3 27455043 27455329 -200069249 - L2 LINE L2 -929 2384 2128 1661 158 53 14 chr3 27455329 27455613 -200068965 + AluJb SINE Alu 1 295 -17 1889 294 142 42 chr3 27455613 27455997 -200068581 - L2 LINE L2 -1185 2128 1454 1280 192 7 97 chr3 27456159 27456467 -200068111 + AluJb SINE Alu 1 280 -32 2182 126 7 0 chr3 27457118 27457420 -200067158 + AluSx SINE Alu 2 305 -7 201 200 20 20 chr3 27457480 27457530 -200067048 + (TATG)n Simple_repeat Simple_repeat 2 51 0 2470 51 0 0 chr3 27458051 27458345 -200066233 + AluY SINE Alu 1 294 -17 197 208 104 0 chr3 27459614 27459662 -200064916 - L2 LINE L2 0 3272 3220 186 293 75 47 chr3 27461000 27461106 -200063472 - MIR SINE MIR -14 248 140 290 366 108 39 chr3 27462455 27462734 -200061844 + L2 LINE L2 2919 3216 -56 1000 220 99 0 chr3 27463103 27463326 -200061252 + MER45B DNA AcHobo 2 246 -794 1764 157 18 3 chr3 27463424 27463710 -200060868 - AluSx SINE Alu -22 290 1 682 207 0 0 chr3 27463716 27463832 -200060746 + MER45B DNA AcHobo 488 603 -437 395 234 0 0 chr3 27463832 27463909 -200060669 + MER45B DNA AcHobo 964 1040 0 347 247 25 0 chr3 27464222 27464303 -200060275 - MIR SINE MIR -174 88 6 1410 191 32 50 chr3 27464838 27465121 -200059457 - AluJo SINE Alu -32 280 3 24 53 0 0 chr3 27465131 27465169 -200059409 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr3 27465276 27465301 -200059277 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr3 27465647 27465668 -200058910 + (T)n Simple_repeat Simple_repeat 1 21 0 468 261 197 18 chr3 27465721 27465939 -200058639 - MIR SINE MIR -1 261 5 266 269 0 0 chr3 27466331 27466398 -200058180 + MLT1C LTR MaLR 196 262 -205 867 221 107 12 chr3 27466398 27466642 -200057936 + MLT1C LTR MaLR 201 467 0 3162 171 39 24 chr3 27466661 27466737 -200057841 + L1MD2 LINE L1 5254 5327 -1032 2207 110 7 7 chr3 27466737 27467045 -200057533 + AluSc SINE Alu 1 308 -1 3162 171 39 24 chr3 27467045 27467640 -200056938 + L1MD2 LINE L1 5327 5935 -424 2185 89 28 3 chr3 27467694 27467985 -200056593 + AluSx SINE Alu 15 312 0 643 81 35 0 chr3 27468101 27468188 -200056390 - HY4 scRNA scRNA -3 90 1 1600 223 61 57 chr3 27468191 27468547 -200056031 - L1MC4 LINE L1 -135 7907 7547 1452 193 15 8 chr3 27468547 27468812 -200055766 + AluSq SINE Alu 31 297 -16 1600 223 61 57 chr3 27468812 27468980 -200055598 - L1MC4 LINE L1 -495 7547 7381 1204 163 12 0 chr3 27469115 27469423 -200055155 - L1PA14 LINE L1 -1 6160 5798 480 252 38 15 chr3 27469415 27469546 -200055032 + L1MD2 LINE L1 5925 6058 -301 * 4502 178 29 7 chr3 27469578 27470543 -200054035 - L1MB8 LINE L1 -5 6173 5190 2126 129 0 13 chr3 27470543 27470852 -200053726 - AluSq SINE Alu -8 305 1 470 231 103 0 chr3 27470859 27470976 -200053602 - FLAM_A SINE Alu -3 130 2 552 193 0 0 chr3 27471078 27471192 -200053386 - L1MB8 LINE L1 -1025 5121 5008 992 204 70 70 chr3 27471197 27471482 -200053096 + L1MD2 LINE L1 6067 6351 -8 1362 205 69 11 chr3 27472079 27472454 -200052124 + LTR37A LTR ERV1 30 426 0 195 338 69 46 chr3 27472528 27472744 -200051834 - L2 LINE L2 -101 3212 2992 399 321 147 36 chr3 27472851 27473356 -200051222 - L2 LINE L2 -2227 1087 527 196 368 0 0 chr3 27473371 27473439 -200051139 - L2 LINE L2 -2902 412 345 352 279 56 62 chr3 27473494 27473867 -200050711 - L1P LINE L1 -834 5312 4942 372 194 14 0 chr3 27474102 27474174 -200050404 + MIR SINE MIR 81 153 -109 32 101 0 0 chr3 27474178 27474287 -200050291 + AT_rich Low_complexity Low_complexity 1 109 0 421 329 127 32 chr3 27474610 27475289 -200049289 - L2 LINE L2 -2 3270 2533 211 284 174 9 chr3 27475324 27475433 -200049145 + L3b LINE CR1 1212 1338 -245 2434 168 68 41 chr3 27475732 27476292 -200048286 + MER90 LTR ERV1 1 575 0 1419 160 80 43 chr3 27476650 27476950 -200047628 - MER44D DNA MER2_type -5 604 24 2244 102 3 0 chr3 27477908 27478202 -200046376 - AluSx SINE Alu -12 300 6 24 0 0 0 chr3 27478223 27478247 -200046331 + AT_rich Low_complexity Low_complexity 1 24 0 1152 163 0 25 chr3 27478473 27478669 -200045909 - AluJo SINE Alu -41 271 81 874 231 185 57 chr3 27478722 27478861 -200045717 - L1MC4 LINE L1 0 8042 7922 423 0 0 0 chr3 27478861 27478908 -200045670 + (CA)n Simple_repeat Simple_repeat 2 48 0 874 231 185 57 chr3 27478908 27479227 -200045351 - L1MC4 LINE L1 -120 7922 7525 264 271 80 33 chr3 27479232 27479383 -200045195 + Charlie7 DNA MER1_type 2454 2611 -1 704 128 38 8 chr3 27479570 27479703 -200044875 + AluSg/x SINE Alu 166 302 -10 1333 79 6 0 chr3 27479707 27479884 -200044694 + AluSq SINE Alu 128 305 -8 303 381 8 0 chr3 27480013 27480131 -200044447 + L2 LINE L2 3154 3272 0 372 160 0 0 chr3 27530250 27530350 -199994228 + G-rich Low_complexity Low_complexity 1 100 0 30203 34 2 0 chr3 27530392 27535032 -199989546 + L1PA3 LINE L1 1507 6154 -1 6858 118 5 11 chr3 27535835 27537254 -199987324 + L1MA1 LINE L1 4887 6297 -5 306 306 139 0 chr3 27537360 27537468 -199987110 - L2 LINE L2 -1 3312 3190 245 260 170 10 chr3 27537725 27537825 -199986753 - MIR SINE MIR -46 216 101 1802 191 25 0 chr3 27537972 27538401 -199986177 - MLT2B1 LTR ERVL 0 554 3 1476 318 26 61 chr3 27538476 27539356 -199985222 - L2 LINE L2 -83 3230 2387 386 332 58 31 chr3 27539641 27539933 -199984645 - LTR16C LTR ERVL -90 401 102 1671 204 0 10 chr3 27540674 27540968 -199983610 + AluJo SINE Alu 1 291 -21 244 196 208 40 chr3 27541288 27541461 -199983117 + L1MC5 LINE L1 7664 7865 -96 246 62 0 0 chr3 27542248 27542280 -199982298 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 1040 199 11 0 chr3 27543083 27543269 -199981309 + MER5A DNA MER1_type 1 188 -1 864 206 78 0 chr3 27543555 27543735 -199980843 - MER3 DNA MER1_type 0 209 16 870 140 0 15 chr3 27543739 27543875 -199980703 - AluJo SINE Alu -178 134 1 830 203 0 0 chr3 27543956 27544109 -199980469 + MER63A DNA MER1_type 58 210 0 825 260 63 4 chr3 27546697 27546951 -199977627 + MLT1H LTR MaLR 23 291 -258 424 304 137 34 chr3 27548417 27548621 -199975957 + MIR SINE MIR 36 260 -2 1769 177 47 113 chr3 27548747 27548857 -199975721 + L1MC4 LINE L1 7441 7557 -485 2481 72 3 0 chr3 27548857 27549162 -199975416 - AluSp SINE Alu -6 307 2 1769 177 47 113 chr3 27549162 27549513 -199975065 + L1MC4 LINE L1 7557 7849 -193 2099 119 19 19 chr3 27549513 27549825 -199974753 - AluSx SINE Alu 0 312 1 1769 177 47 113 chr3 27549825 27550007 -199974571 + L1MC4 LINE L1 7849 8042 0 390 284 46 126 chr3 27550043 27550328 -199974250 + L2 LINE L2 3009 3270 -2 1933 143 38 35 chr3 27552590 27552962 -199971616 - THE1C LTR MaLR 0 375 3 251 350 82 66 chr3 27553090 27553393 -199971185 + L2 LINE L2 2576 2883 -431 2325 93 3 13 chr3 27553419 27553721 -199970857 - AluSp SINE Alu -14 299 1 236 196 0 0 chr3 27553909 27553965 -199970613 - L1MC4 LINE L1 -1344 6698 6643 3190 58 5 16 chr3 27554096 27554543 -199970035 - L1P LINE L1 -5050 1096 655 381 326 65 28 chr3 27554668 27554970 -199969608 - MLT1J2 LTR MaLR -66 380 65 1185 247 90 14 chr3 27555696 27556052 -199968526 + MSTD LTR MaLR 5 387 -9 1053 310 26 69 chr3 27556125 27556758 -199967820 - ERVL LTR ERVL -323 5331 4767 2078 153 19 25 chr3 27556758 27557125 -199967453 - MLT1A1 LTR MaLR 0 365 1 1053 310 26 69 chr3 27557125 27557276 -199967302 - ERVL LTR ERVL -887 4767 4611 342 289 126 15 chr3 27557447 27557582 -199966996 - MIR3 SINE MIR -32 176 27 246 226 0 0 chr3 27557803 27557865 -199966713 + L2 LINE L2 2996 3057 -215 230 295 39 0 chr3 27558180 27558258 -199966320 + L2 LINE L2 2303 2383 -931 22 0 0 0 chr3 27558343 27558365 -199966213 + AT_rich Low_complexity Low_complexity 1 22 0 475 279 28 0 chr3 27558566 27558745 -199965833 + Charlie8 DNA MER1_type 93 276 -2141 217 315 62 15 chr3 27558846 27558976 -199965602 + L2 LINE L2 2929 3064 -208 1774 176 70 40 chr3 27559257 27559701 -199964877 - LTR2B LTR ERV1 0 490 34 33440 63 2 9 chr3 27559722 27564830 -199959748 - Harlequin LTR ERV1 0 6896 1813 8165 62 74 107 chr3 27564813 27566278 -199958300 - Harlequin LTR ERV1 -5480 1416 1 * 1733 180 77 40 chr3 27566278 27566722 -199957856 - LTR2B LTR ERV1 0 490 31 780 286 18 13 chr3 27567028 27567255 -199957323 + MIR SINE MIR 35 262 0 829 241 127 0 chr3 27567399 27567611 -199956967 + MIR SINE MIR 3 241 -21 498 250 42 30 chr3 27567649 27567817 -199956761 - MIR SINE MIR -48 214 45 715 357 31 3 chr3 27567824 27568174 -199956404 + L2 LINE L2 2242 2601 -713 271 283 26 79 chr3 27569095 27569247 -199955331 + MIR3 SINE MIR 46 189 -19 436 230 0 0 chr3 27569454 27569554 -199955024 + MER103 DNA DNA 22 121 -45 225 261 33 43 chr3 27569704 27569796 -199954782 - L2 LINE L2 -8 3305 3215 2290 96 7 0 chr3 27570208 27570500 -199954078 - AluSg SINE Alu -16 294 1 407 289 100 17 chr3 27570564 27570744 -199953834 - MIR SINE MIR -56 206 12 567 282 29 0 chr3 27570769 27570939 -199953639 - MER63A DNA MER1_type -35 175 1 234 384 103 34 chr3 27571266 27571412 -199953166 + L2 LINE L2 3115 3270 -2 32 26 0 0 chr3 27571950 27571989 -199952589 + AT_rich Low_complexity Low_complexity 1 39 0 492 230 170 15 chr3 27572101 27572236 -199952342 + MER5A DNA MER1_type 27 182 -7 795 259 70 73 chr3 27572979 27573523 -199951055 + MER34 LTR ERV1 1 542 0 280 222 0 0 chr3 27573571 27573625 -199950953 + GA-rich Low_complexity Low_complexity 1 54 0 1920 118 59 7 chr3 27574423 27574720 -199949858 - AluSg SINE Alu 0 311 1 2533 70 0 6 chr3 27574993 27575306 -199949272 - AluY SINE Alu 0 311 1 1253 277 32 41 chr3 27575599 27576036 -199948542 - MLT1G LTR MaLR -95 495 63 2579 144 12 2 chr3 27576037 27576467 -199948111 + MER57B LTR ERV1 1 434 0 3911 147 19 14 chr3 27576467 27577135 -199947443 + MER57B-int LTR ERV1 1 672 -6865 3496 120 54 0 chr3 27577134 27577675 -199946903 + MER57B-int LTR ERV1 290 859 -5087 * 4235 162 59 4 chr3 27577658 27578437 -199946141 + MER57B-int LTR ERV1 1550 2371 -5166 921 121 11 22 chr3 27578436 27578611 -199945967 + MER57B-int LTR ERV1 1503 2014 -3932 * 2801 118 34 36 chr3 27578587 27578928 -199945650 + MER57B-int LTR ERV1 2167 2507 -5262 2314 107 3 3 chr3 27578928 27579237 -199945341 + AluY SINE Alu 1 309 -2 2801 118 34 36 chr3 27579237 27579526 -199945052 + MER57B-int LTR ERV1 2507 4065 -3704 1384 109 0 0 chr3 27579528 27579711 -199944867 + AluSg/x SINE Alu 129 311 -1 4401 148 65 47 chr3 27579711 27580834 -199943744 + MER57B-int LTR ERV1 2491 4041 -1720 * 11886 98 94 65 chr3 27580828 27581369 -199943209 + MER57B-int LTR ERV1 5310 5834 -1703 2271 98 20 7 chr3 27581369 27581675 -199942903 - AluSg SINE Alu 0 310 1 11886 98 94 65 chr3 27581675 27582702 -199941876 + MER57B-int LTR ERV1 5834 6960 -577 2085 115 11 0 chr3 27582702 27583016 -199941562 - AluSx SINE Alu 0 317 1 11886 98 94 65 chr3 27583016 27583611 -199940967 + MER57B-int LTR ERV1 6960 7537 0 2642 142 21 0 chr3 27583611 27584033 -199940545 + MER57B LTR ERV1 1 431 -3 290 333 40 33 chr3 27584849 27584999 -199939579 - MIR SINE MIR -81 181 31 2661 278 107 29 chr3 27585396 27586518 -199938060 - L2 LINE L2 -399 2915 1706 346 167 11 11 chr3 27586535 27586625 -199937953 + (TA)n Simple_repeat Simple_repeat 1 90 0 369 0 0 0 chr3 27586627 27586668 -199937910 + (TG)n Simple_repeat Simple_repeat 2 42 0 847 163 90 6 chr3 27586700 27586878 -199937700 - MER50 LTR ERV1 -19 715 523 588 269 126 31 chr3 27586942 27587332 -199937246 - MER50 LTR ERV1 -298 436 10 495 308 147 35 chr3 27587399 27587766 -199936812 - L1MC4 LINE L1 -547 7495 7088 5767 130 11 8 chr3 27587848 27589009 -199935569 + L1MA3 LINE L1 5062 6226 -79 335 145 16 0 chr3 27589009 27589071 -199935507 - AluSp/q SINE Alu -3 300 238 1305 146 5 15 chr3 27589072 27589277 -199935301 + AluSg/x SINE Alu 80 282 -30 219 103 0 0 chr3 27589281 27589320 -199935258 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 22 35 0 0 chr3 27589351 27589380 -199935198 + AT_rich Low_complexity Low_complexity 1 29 0 1316 221 77 83 chr3 27589385 27590008 -199934570 + LTR28 LTR ERV1 402 1020 0 675 260 30 24 chr3 27590089 27590488 -199934090 - L1MEc LINE L1 -4844 1371 961 1276 201 156 76 chr3 27590489 27591177 -199933401 + LTR1B LTR ERV1 1 743 -83 3083 243 44 15 chr3 27591304 27591852 -199932726 - L1MEc LINE L1 -5427 969 383 1885 156 6 16 chr3 27591852 27592167 -199932411 + AluJb SINE Alu 1 312 0 3083 243 44 15 chr3 27592167 27592526 -199932052 - L1MEc LINE L1 -6013 383 36 857 176 0 0 chr3 27593793 27593924 -199930654 - FLAM_C SINE Alu -12 131 1 271 310 0 0 chr3 27595188 27595259 -199929319 - MIR SINE MIR -136 126 56 256 303 13 0 chr3 27595576 27595652 -199928926 - MIR SINE MIR -116 146 70 456 306 110 14 chr3 27596204 27596413 -199928165 + MIR SINE MIR 15 243 -19 191 240 100 0 chr3 27596479 27596529 -199928049 - MIR SINE MIR -62 146 92 250 274 0 65 chr3 27596710 27596772 -199927806 + MIR SINE MIR 67 125 -83 436 119 0 0 chr3 27596777 27596836 -199927742 + AluSc SINE Alu 230 288 -21 347 269 69 35 chr3 27596941 27597086 -199927492 + L2 LINE L2 3160 3309 -4 2230 127 0 6 chr3 27598370 27598684 -199925894 + AluSq SINE Alu 1 312 -1 244 244 105 0 chr3 27598699 27598785 -199925793 - L1ME LINE L1 -302 5819 5725 268 283 33 20 chr3 27598867 27599019 -199925559 - HAL1b LINE L1 -7 1341 1188 206 276 52 0 chr3 27599146 27599204 -199925374 - MER5B DNA MER1_type -9 169 109 1644 218 79 62 chr3 27601793 27602377 -199922201 + MLT1G1 LTR MaLR 2 595 0 331 368 36 45 chr3 27602559 27602779 -199921799 + L2 LINE L2 3035 3252 -20 342 358 34 17 chr3 27603189 27603368 -199921210 - MER5A DNA MER1_type 0 189 8 758 259 126 43 chr3 27604635 27605055 -199919523 - LTR16A1 LTR ERVL -2 455 1 211 219 0 0 chr3 27606040 27606081 -199918497 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 432 187 30 18 chr3 27606180 27606306 -199918272 - L1ME2 LINE L1 -2 6168 6040 1054 208 59 44 chr3 27606339 27606680 -199917898 - L1ME2 LINE L1 -109 6055 5710 860 123 23 0 chr3 27606879 27607009 -199917569 - FLAM_C SINE Alu 0 133 1 28 86 0 0 chr3 27607972 27608042 -199916536 + AT_rich Low_complexity Low_complexity 1 70 0 1533 186 125 6 chr3 27610524 27610835 -199913743 + MER7A DNA MER2_type 1 346 0 261 0 0 0 chr3 27612202 27612231 -199912347 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 273 29 0 0 chr3 27612230 27612264 -199912314 + (TG)n Simple_repeat Simple_repeat 1 34 0 201 74 0 0 chr3 27612269 27612296 -199912282 + (GGGA)n Simple_repeat Simple_repeat 3 29 0 568 282 45 50 chr3 27613932 27614226 -199910352 - MER102b DNA MER1_type -5 336 33 267 305 79 73 chr3 27616069 27616246 -199908332 + MIR SINE MIR 59 236 -26 603 215 156 32 chr3 27616288 27616474 -199908104 - MIR SINE MIR -6 256 48 523 269 136 23 chr3 27616559 27616949 -199907629 - L1ME4a LINE L1 -153 5968 5535 273 301 125 91 chr3 27616971 27617147 -199907431 - MIR3 SINE MIR -9 199 18 210 196 0 20 chr3 27617504 27617555 -199907023 + A-rich Low_complexity Low_complexity 5 54 0 529 323 47 5 chr3 27618485 27618677 -199905901 + MIR SINE MIR 1 200 -62 209 309 61 42 chr3 27618748 27618913 -199905665 - L2 LINE L2 -1217 2097 1930 267 362 45 20 chr3 27620742 27620941 -199903637 + Charlie8 DNA MER1_type 43 246 -2171 6120 110 4 4 chr3 27620984 27622435 -199902143 - L1PA13 LINE L1 -1 6162 4705 31575 106 12 54 chr3 27622437 27628862 -199895716 - L1PA7 LINE L1 -3 6151 12 4190 187 13 6 chr3 27628871 27629717 -199894861 - L1PA13 LINE L1 -1432 4714 3863 381 335 62 22 chr3 27631056 27631280 -199893298 + MIR SINE MIR 20 252 -10 561 314 76 13 chr3 27631318 27631738 -199892840 - MLT1L LTR MaLR -14 601 90 2360 78 0 16 chr3 27632496 27632804 -199891774 - AluY SINE Alu -8 303 1 3495 185 25 20 chr3 27634072 27634715 -199889863 + L1MA2 LINE L1 16 661 -6904 * 8379 187 68 52 chr3 27634707 27634800 -199889778 + L1MA2 LINE L1 2131 2221 -5502 2404 84 3 3 chr3 27634800 27635109 -199889469 + AluSg SINE Alu 1 309 -1 8379 187 68 52 chr3 27635109 27638678 -199885900 + L1MA2 LINE L1 2221 5733 -1990 2947 80 78 2 chr3 27638678 27639046 -199885532 + MLT2A1 LTR ERVL 1 405 -39 198 0 0 0 chr3 27639046 27639068 -199885510 + (TA)n Simple_repeat Simple_repeat 2 23 0 2947 80 78 2 chr3 27639068 27639112 -199885466 + MLT2A1 LTR ERVL 405 444 0 768 108 122 29 chr3 27639112 27639206 -199885372 + MLT2A1 LTR ERVL 293 406 -38 654 49 0 0 chr3 27639206 27639288 -199885290 + (TA)n Simple_repeat Simple_repeat 2 83 0 768 108 122 29 chr3 27639288 27639332 -199885246 + MLT2A1 LTR ERVL 406 444 0 8379 187 68 52 chr3 27639332 27640160 -199884418 + L1MA2 LINE L1 5733 6547 -1176 1937 158 10 3 chr3 27640160 27640457 -199884121 + AluJb SINE Alu 1 299 -13 8379 187 68 52 chr3 27640457 27641223 -199883355 + L1MA2 LINE L1 6547 7605 -118 2281 119 22 17 chr3 27641223 27641584 -199882994 + THE1C LTR MaLR 1 363 -12 826 98 25 0 chr3 27641589 27641711 -199882867 + L1MA2 LINE L1 7599 7723 0 432 338 65 29 chr3 27642178 27642456 -199882122 + LTR16C LTR ERVL 202 489 -2 228 260 78 26 chr3 27642562 27642639 -199881939 - MIR SINE MIR -131 131 51 240 200 83 161 chr3 27642738 27642918 -199881660 - LTR27 LTR ERV1 0 636 471 * 1577 163 122 11 chr3 27642916 27643262 -199881316 - LTR28 LTR ERV1 -675 345 1 15246 156 40 30 chr3 27643264 27648191 -199876387 - LTR28-int LTR ERV1 -1 6995 632 1041 129 138 45 chr3 27648193 27648417 -199876161 - LTR8A LTR ERV1 -481 246 2 1850 193 58 13 chr3 27648907 27649286 -199875292 + MSTD LTR MaLR 1 396 0 330 366 37 15 chr3 27649424 27649558 -199875020 - L2 LINE L2 -7 3265 3129 234 0 0 0 chr3 27650807 27650833 -199873745 + (T)n Simple_repeat Simple_repeat 1 26 0 249 227 86 125 chr3 27652090 27652218 -199872360 + MIR SINE MIR 5 127 -135 212 373 161 7 chr3 27652533 27652905 -199871673 + L2 LINE L2 1297 1737 -1577 3744 90 4 6 chr3 27652905 27653417 -199871161 - MER9 LTR ERVK 0 511 1 212 373 161 7 chr3 27653417 27653449 -199871129 + L2 LINE L2 1737 1763 -1551 590 290 160 31 chr3 27653485 27653778 -199870800 - MER102b DNA MER1_type 0 341 11 352 186 339 8 chr3 27653931 27654049 -199870529 - MER5A DNA MER1_type -29 160 4 371 319 59 15 chr3 27655178 27655313 -199869265 - MIR SINE MIR -108 154 14 1940 56 144 7 chr3 27655496 27655766 -199868812 - AluY SINE Alu -3 308 2 722 275 39 0 chr3 27655835 27656017 -199868561 - MER5A DNA MER1_type 0 189 1 454 261 35 45 chr3 27656246 27656445 -199868133 - L1ME LINE L1 -464 5657 5461 22 0 0 0 chr3 27658394 27658416 -199866162 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr3 27659100 27659134 -199865444 + AT_rich Low_complexity Low_complexity 1 34 0 269 145 58 29 chr3 27659136 27659205 -199865373 - MER4-int LTR ERV1 -4975 1623 1553 3239 91 11 7 chr3 27659206 27659669 -199864909 - L1PA11 LINE L1 -2 6172 5708 5048 195 47 16 chr3 27660026 27661402 -199863176 - L1MC1 LINE L1 -15 6598 5187 2080 166 66 20 chr3 27661395 27661983 -199862595 - L1MC1 LINE L1 -4166 2260 1554 * 878 185 82 108 chr3 27661983 27662413 -199862165 - MLT1A1 LTR MaLR 0 365 1 623 150 8 53 chr3 27662414 27662547 -199862031 - L1MC1 LINE L1 -4869 1557 1431 2182 107 18 18 chr3 27662547 27662884 -199861694 + THE1C LTR MaLR 1 337 -38 7591 149 19 51 chr3 27662889 27664348 -199860230 - L1MC1 LINE L1 -4995 1431 21 1669 159 18 18 chr3 27664640 27664917 -199859661 - AluJo SINE Alu -19 293 17 259 269 52 30 chr3 27665200 27665334 -199859244 - L1M4 LINE L1 -3141 3005 2869 29 78 0 0 chr3 27665361 27665425 -199859153 + AT_rich Low_complexity Low_complexity 1 64 0 769 229 38 0 chr3 27665471 27665628 -199858950 + FRAM SINE Alu 11 173 -3 362 252 62 55 chr3 27665656 27665930 -199858648 - L1M4 LINE L1 -3594 2552 2277 2044 113 0 63 chr3 27666037 27666355 -199858223 - AluSc SINE Alu -11 298 1 23 33 0 0 chr3 27666357 27666387 -199858191 + AT_rich Low_complexity Low_complexity 1 30 0 225 196 0 0 chr3 27666573 27666629 -199857949 + (TA)n Simple_repeat Simple_repeat 2 57 0 1474 207 4 4 chr3 27666828 27667103 -199857475 + AluJo SINE Alu 11 285 -27 1519 147 58 0 chr3 27667268 27667526 -199857052 + MER50 LTR ERV1 1 273 -461 380 293 167 0 chr3 27670177 27670351 -199854227 + L2 LINE L2 2598 2800 -514 373 212 104 39 chr3 27670362 27670556 -199854022 - MER58 DNA MER1_type -1 2419 10 485 331 60 62 chr3 27670572 27671004 -199853574 + L2 LINE L2 2815 3245 -68 380 283 118 72 chr3 27671605 27671925 -199852653 + L1ME4a LINE L1 5655 5995 -126 2316 123 30 6 chr3 27671925 27672291 -199852287 - THE1C LTR MaLR 0 375 1 380 283 118 72 chr3 27672291 27672345 -199852233 + L1ME4a LINE L1 5995 6045 -76 27 29 0 0 chr3 27672375 27672409 -199852169 + AT_rich Low_complexity Low_complexity 1 34 0 426 20 0 0 chr3 27674846 27674897 -199849681 + (CA)n Simple_repeat Simple_repeat 1 51 0 1370 174 41 10 chr3 27675270 27675563 -199849015 + L1MA9 LINE L1 5989 6290 -22 21 0 0 0 chr3 27675636 27675657 -199848921 + AT_rich Low_complexity Low_complexity 1 21 0 5673 177 32 18 chr3 27676801 27677828 -199846750 + L1PA13 LINE L1 1 1042 -5745 9553 229 19 31 chr3 27677836 27679455 -199845123 + L1PA13 LINE L1 1706 3331 -3466 401 41 0 0 chr3 27679455 27679504 -199845074 + MADE1 DNA Mariner 1 49 -31 9553 229 19 31 chr3 27679504 27680430 -199844148 + L1PA13 LINE L1 3331 4267 -2530 814 163 52 77 chr3 27680456 27680689 -199843889 + L1PA16 LINE L1 5940 6166 0 929 216 10 0 chr3 27680815 27681014 -199843564 - L1MB3 LINE L1 -113 6070 5870 4448 126 5 23 chr3 27681716 27682462 -199842116 - L1PA15 LINE L1 -7 6158 5426 845 208 25 95 chr3 27684428 27684669 -199839909 + MER58A DNA MER1_type 1 224 0 247 326 59 112 chr3 27684673 27685146 -199839432 - L2 LINE L2 0 3272 2825 424 291 127 14 chr3 27685975 27686195 -199838383 - MIR SINE MIR 0 262 18 434 158 0 0 chr3 27686680 27686762 -199837816 - L1 LINE L1 -921 6644 6563 17324 182 56 32 chr3 27686863 27689736 -199834842 - L1 LINE L1 -2671 4894 1857 207 0 0 0 chr3 27689736 27689759 -199834819 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 17324 182 56 32 chr3 27689759 27691643 -199832935 - L1 LINE L1 -5708 1857 19 2076 139 0 26 chr3 27692362 27692707 -199831871 - L1PA16 LINE L1 -9 6157 5822 1187 126 0 11 chr3 27693189 27693394 -199831184 - L1PA15 LINE L1 -199 5962 5769 13425 210 30 14 chr3 27693403 27697790 -199826788 - L1PB2 LINE L1 -2 6865 2357 705 272 50 7 chr3 27698148 27698427 -199826151 + L1 LINE L1 3185 3475 -2671 434 158 0 0 chr3 27698528 27698610 -199825968 + L1 LINE L1 5144 5225 -921 397 291 97 11 chr3 27699095 27699270 -199825308 + MIR SINE MIR 18 207 -55 15385 162 56 5 chr3 27699438 27702440 -199822138 - L1PBa LINE L1 -3705 3157 3 618 198 9 8 chr3 27702449 27702580 -199821998 - L1P5 LINE L1 -374 7220 7089 347 174 23 0 chr3 27702568 27702654 -199821924 - L1P5 LINE L1 -961 6623 6536 * 8500 251 13 6 chr3 27702673 27705026 -199819552 - L1P5 LINE L1 -1905 5679 3311 502 204 27 41 chr3 27705025 27705162 -199819416 - L1P5 LINE L1 -4681 2900 2764 * 607 168 0 53 chr3 27705162 27705275 -199819303 - U6 snRNA snRNA 0 107 1 8840 210 30 9 chr3 27705277 27708036 -199816542 - L1P4 LINE L1 -342 6527 3711 1199 259 11 6 chr3 27708041 27708396 -199816182 - L1P4 LINE L1 -3495 3354 2998 * 9329 151 106 7 chr3 27708395 27710088 -199814490 - L1P4 LINE L1 -4095 2754 893 276 340 21 56 chr3 27710131 27710275 -199814303 - MER91C DNA MER1_type 0 140 2 566 258 31 13 chr3 27710569 27710728 -199813850 + MIR SINE MIR 74 235 -27 910 198 43 77 chr3 27710810 27711342 -199813236 - L1MDa LINE L1 -3694 2846 2329 1119 127 6 6 chr3 27711625 27711791 -199812787 - AluSg/x SINE Alu -13 299 134 2285 109 0 0 chr3 27711791 27712093 -199812485 - AluSc SINE Alu -7 302 1 395 228 53 0 chr3 27712324 27712438 -199812140 - L1ME3A LINE L1 -223 5947 5828 391 277 34 6 chr3 27712434 27712649 -199811929 + L1M2 LINE L1 5282 5517 -653 * 952 68 0 0 chr3 27712853 27712971 -199811607 - L1PA7 LINE L1 -8 6146 6029 378 327 171 18 chr3 27712973 27713254 -199811324 + L1ME3A LINE L1 5513 5836 -334 198 167 0 0 chr3 27713751 27713787 -199810791 + T-rich Low_complexity Low_complexity 1 36 0 253 212 15 45 chr3 27714604 27714670 -199809908 + MIR3 SINE MIR 104 167 -41 186 43 0 0 chr3 27714722 27714745 -199809833 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1763 86 6 147 chr3 27714746 27715073 -199809505 - AluSp SINE Alu -32 281 1 204 275 0 46 chr3 27715685 27715794 -199808784 + CT-rich Low_complexity Low_complexity 5 108 0 229 293 0 61 chr3 27715822 27715904 -199808674 + L2 LINE L2 3231 3307 -6 358 197 56 0 chr3 27716084 27716155 -199808423 + MLT1F LTR MaLR 3 77 -465 304 303 55 9 chr3 27716161 27716270 -199808308 + MLT1F LTR MaLR 28 141 -401 218 268 73 12 chr3 27716400 27716482 -199808096 + MIR SINE MIR 58 144 -64 2351 85 9 6 chr3 27716803 27717133 -199807445 - L1PB1 LINE L1 0 6151 5821 6349 212 5 6 chr3 27717133 27718569 -199806009 - L1 LINE L1 -971 5891 4457 4398 140 18 6 chr3 27718565 27721458 -199803120 - L1PBa LINE L1 -3097 3765 636 * 1105 160 5 0 chr3 27721463 27721657 -199802921 - L1PBa LINE L1 -6668 195 1 213 94 0 0 chr3 27722277 27722309 -199802269 + (ATG)n Simple_repeat Simple_repeat 3 34 0 814 171 18 6 chr3 27723697 27723861 -199800717 - L1MA10 LINE L1 0 6334 6169 207 0 0 0 chr3 27723985 27724008 -199800570 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 386 302 0 10 chr3 27724015 27724111 -199800467 - L2 LINE L2 -22 3291 3197 253 128 0 0 chr3 27725583 27725622 -199798956 + L1MC4a LINE L1 5625 5663 -458 460 341 28 8 chr3 27725677 27725932 -199798646 + MIR SINE MIR 3 262 0 378 281 102 56 chr3 27725938 27726134 -199798444 + L1MC4a LINE L1 5690 5894 -1914 237 368 0 0 chr3 27726336 27726412 -199798166 + MIR SINE MIR 110 185 -77 465 261 71 38 chr3 27726507 27726691 -199797887 + L2 LINE L2 3122 3311 -2 524 274 25 60 chr3 27726921 27727122 -199797456 - MIR SINE MIR -64 198 5 22 56 0 0 chr3 27727263 27727299 -199797279 + AT_rich Low_complexity Low_complexity 1 36 0 327 274 124 65 chr3 27727431 27727654 -199796924 + L1ME LINE L1 5261 5469 -652 2049 130 7 3 chr3 27727654 27727955 -199796623 + AluSg SINE Alu 1 302 -8 327 274 124 65 chr3 27727955 27728165 -199796413 + L1ME LINE L1 5469 5720 -401 27 49 0 0 chr3 27728213 27728254 -199796324 + AT_rich Low_complexity Low_complexity 1 41 0 2775 183 34 15 chr3 27728645 27729285 -199795293 + L1MA9 LINE L1 5543 6290 -22 1002 298 81 24 chr3 27729927 27730310 -199794268 - MLT1I LTR MaLR 0 409 5 282 305 24 12 chr3 27730419 27730501 -199794077 - L2 LINE L2 -11 3261 3179 633 255 0 14 chr3 27731257 27731398 -199793180 - MLT1I LTR MaLR -1 408 270 196 157 59 0 chr3 27731748 27731799 -199792779 + CT-rich Low_complexity Low_complexity 4 57 0 281 232 14 14 chr3 27731815 27731884 -199792694 + CT-rich Low_complexity Low_complexity 4 72 0 299 284 216 8 chr3 27732022 27732156 -199792422 + MIR3 SINE MIR 44 205 -3 2313 87 43 3 chr3 27732896 27733243 -199791335 - L1MA2 LINE L1 -5 6299 5939 39 22 0 0 chr3 27733634 27733680 -199790898 + AT_rich Low_complexity Low_complexity 1 46 0 2163 118 0 0 chr3 27733778 27734074 -199790504 - AluSg SINE Alu -14 296 1 39 74 0 0 chr3 27734199 27734280 -199790298 + AT_rich Low_complexity Low_complexity 1 81 0 1926 265 35 21 chr3 27734578 27735145 -199789433 + MLT1G LTR MaLR 1 575 -15 836 234 54 0 chr3 27736280 27736464 -199788114 + MER58A DNA MER1_type 31 224 0 255 70 0 93 chr3 27736751 27736794 -199787784 - LTR8 LTR ERV1 0 691 653 2026 224 128 24 chr3 27736794 27737451 -199787127 - MER50 LTR ERV1 0 734 10 * 3001 169 30 81 chr3 27737445 27738149 -199786429 - LTR8 LTR ERV1 -23 668 1 189 308 0 0 chr3 27738789 27738841 -199785737 + L2 LINE L2 3220 3271 -1 257 263 0 38 chr3 27739504 27739584 -199784994 + Charlie7 DNA MER1_type 112 188 -2424 22 0 0 0 chr3 27740593 27740615 -199783963 + AT_rich Low_complexity Low_complexity 1 22 0 222 128 0 0 chr3 27740657 27740696 -199783882 + (CA)n Simple_repeat Simple_repeat 2 40 0 236 253 0 77 chr3 27741015 27741106 -199783472 + Charlie7 DNA MER1_type 112 195 -2417 660 261 143 28 chr3 27741112 27741497 -199783081 + MLT1J2 LTR MaLR 3 446 0 564 295 98 30 chr3 27741570 27741939 -199782639 + Charlie7 DNA MER1_type 283 676 -1936 267 364 65 9 chr3 27742877 27743094 -199781484 - L1ME LINE L1 -298 5823 5595 26 64 0 0 chr3 27743126 27743173 -199781405 + AT_rich Low_complexity Low_complexity 1 47 0 403 207 19 4 chr3 27743231 27743345 -199781233 - L1MC4 LINE L1 0 8042 7883 180 0 0 0 chr3 27744559 27744579 -199779999 + (T)n Simple_repeat Simple_repeat 1 20 0 9302 63 10 114 chr3 27744802 27746350 -199778228 - SVA Other Other 0 1386 1 26 30 0 0 chr3 27746417 27746450 -199778128 + AT_rich Low_complexity Low_complexity 1 33 0 833 276 45 98 chr3 27746784 27747273 -199777305 - MLT1J LTR MaLR -43 468 6 368 254 51 35 chr3 27747283 27747480 -199777098 - HAL1 LINE L1 -254 2253 2054 272 231 15 15 chr3 27747551 27747616 -199776962 + MLT1J LTR MaLR 94 158 -353 238 263 29 88 chr3 27747706 27747843 -199776735 + MLT1J LTR MaLR 383 511 0 2348 107 0 0 chr3 27748085 27748394 -199776184 - AluSg SINE Alu -1 309 1 21 36 0 0 chr3 27748452 27748480 -199776098 + AT_rich Low_complexity Low_complexity 1 28 0 980 189 22 0 chr3 27749020 27749205 -199775373 + MER5A DNA MER1_type 1 189 0 24 0 0 0 chr3 27749423 27749447 -199775131 + AT_rich Low_complexity Low_complexity 1 24 0 370 206 0 14 chr3 27749528 27749601 -199774977 - MER52A LTR ERV1 0 1755 1684 * 3742 183 55 93 chr3 27749593 27750837 -199773741 - MER52A LTR ERV1 -559 1196 1 236 370 120 0 chr3 27752701 27752809 -199771769 - L2 LINE L2 -6 3266 3146 398 200 14 21 chr3 27752854 27752994 -199771584 + (TAGA)n Simple_repeat Simple_repeat 4 142 0 1112 317 100 9 chr3 27753020 27753524 -199771054 + L2 LINE L2 2758 3313 0 417 186 23 124 chr3 27753651 27753780 -199770798 - MLT1H LTR MaLR -51 498 383 2424 89 3 0 chr3 27757553 27757856 -199766722 - AluSp SINE Alu -9 304 1 302 218 39 0 chr3 27758409 27758487 -199766091 + L1M4 LINE L1 2439 2519 -3627 22 0 0 0 chr3 27758800 27758822 -199765756 + AT_rich Low_complexity Low_complexity 1 22 0 307 323 131 3 chr3 27759013 27759295 -199765283 - L1ME LINE L1 -303 5818 5501 250 294 0 0 chr3 27759396 27759464 -199765114 + GA-rich Low_complexity Low_complexity 2 69 0 798 234 70 0 chr3 27760539 27760740 -199763838 - MER58C DNA MER1_type 0 215 1 645 244 82 22 chr3 27761415 27761685 -199762893 + LTR37A LTR ERV1 108 393 -33 4053 152 12 24 chr3 27762072 27763035 -199761543 - L1MC1 LINE L1 -25 6377 5355 258 254 0 0 chr3 27763036 27763091 -199761487 + Tigger5 DNA MER2_type 1 55 -2268 * 303 169 13 65 chr3 27763060 27763137 -199761441 + Tigger5 DNA MER2_type 2251 2323 0 350 206 14 14 chr3 27763149 27763222 -199761356 + Tigger5 DNA MER2_type 2251 2323 0 6303 234 21 14 chr3 27763225 27764961 -199759617 - L1MC1 LINE L1 -863 5352 3605 4108 222 19 15 chr3 27765027 27765874 -199758704 - MER21B LTR ERV1 -11 852 3 2862 245 43 44 chr3 27765883 27765976 -199758602 - L1MC1 LINE L1 -2907 3308 3216 2057 122 23 3 chr3 27765976 27766279 -199758299 - AluSx SINE Alu -3 309 1 2862 245 43 44 chr3 27766279 27767146 -199757432 - L1MC1 LINE L1 -2999 3216 2354 3415 131 26 2 chr3 27767146 27767687 -199756891 - MER41C LTR ERV1 0 554 1 2862 245 43 44 chr3 27767687 27768556 -199756022 - L1MC1 LINE L1 -3861 2354 1486 489 107 48 0 chr3 27768562 27768646 -199755932 - MSTC LTR MaLR -2 426 339 3575 179 82 62 chr3 27769775 27770629 -199753949 + L1MCa LINE L1 32 902 -5524 207 278 46 87 chr3 27770630 27770803 -199753775 - L2 LINE L2 -208 3064 2899 479 307 95 65 chr3 27771267 27771791 -199752787 - L2 LINE L2 -957 2357 1818 225 127 18 0 chr3 27773322 27773377 -199751201 - MER96B DNA MER1_type? -247 170 115 4139 228 163 30 chr3 27774277 27775964 -199748614 + L1MA8 LINE L1 7 1468 -5638 210 71 0 0 chr3 27775964 27775992 -199748586 + (TG)n Simple_repeat Simple_repeat 1 28 0 4139 228 163 30 chr3 27775992 27778248 -199746330 + L1MA8 LINE L1 1468 4181 -2925 5249 155 48 19 chr3 27778254 27779123 -199745455 + L1MA8 LINE L1 5599 6531 -720 2284 113 0 0 chr3 27779123 27779425 -199745153 - AluSq SINE Alu -11 302 1 5249 155 48 19 chr3 27779425 27780165 -199744413 + L1MA8 LINE L1 6531 7248 -3 680 288 62 0 chr3 27780303 27780546 -199744032 - L1ME LINE L1 -497 5669 5412 375 313 52 0 chr3 27781619 27781734 -199742844 + MER5C DNA MER1_type 2 122 -202 411 236 189 14 chr3 27781903 27782051 -199742527 - MIR SINE MIR -14 248 75 634 234 0 0 chr3 27782336 27782473 -199742105 - MSTB LTR MaLR -279 147 11 1764 152 11 0 chr3 27783760 27784030 -199740548 + AluSx SINE Alu 29 301 -11 263 273 0 0 chr3 27784530 27784585 -199739993 - L2 LINE L2 -2 3270 3216 455 290 130 12 chr3 27784632 27784801 -199739777 + MIR SINE MIR 5 193 -69 266 0 29 0 chr3 27784801 27784835 -199739743 + (TG)n Simple_repeat Simple_repeat 2 36 0 235 231 0 0 chr3 27784955 27785010 -199739568 - MLT2C1 LTR ERVL -2 395 351 215 203 14 0 chr3 27785011 27785080 -199739498 + (TA)n Simple_repeat Simple_repeat 2 71 0 186 103 0 0 chr3 27785091 27785120 -199739458 + (TAGA)n Simple_repeat Simple_repeat 4 32 0 972 181 5 69 chr3 27785161 27785195 -199739383 - MLT1B LTR MaLR -188 202 167 2325 80 3 13 chr3 27785195 27785507 -199739071 - AluY SINE Alu -2 309 1 972 181 5 69 chr3 27785507 27785688 -199738890 - MLT1B LTR MaLR -223 167 1 7112 194 26 30 chr3 27786044 27786420 -199738158 - L1PA13 LINE L1 0 7601 7225 2898 177 34 5 chr3 27786420 27786984 -199737594 - LTR22 LTR ERVK 0 580 1 7112 194 26 30 chr3 27786984 27788465 -199736113 - L1PA13 LINE L1 -376 7225 5758 2557 58 0 10 chr3 27788465 27788777 -199735801 + AluY SINE Alu 1 309 -2 7112 194 26 30 chr3 27788777 27789482 -199735096 - L1PA13 LINE L1 -1843 5758 5051 15259 178 81 13 chr3 27789530 27795750 -199728828 - L1PB1 LINE L1 0 6867 1 6895 276 26 37 chr3 27795767 27798050 -199726528 - L1PA13 LINE L1 -2541 5043 2737 1894 136 59 0 chr3 27798050 27798336 -199726242 - AluSx SINE Alu -7 305 3 6895 276 26 37 chr3 27798336 27799503 -199725075 - L1PA13 LINE L1 -4847 2737 1559 1716 143 47 75 chr3 27799503 27799889 -199724689 + THE1C LTR MaLR 1 375 0 6895 276 26 37 chr3 27799889 27800994 -199723584 - L1PA13 LINE L1 -6025 1559 4 228 336 137 29 chr3 27801025 27801340 -199723238 - L2 LINE L2 -528 2786 2438 195 328 15 0 chr3 27801487 27801554 -199723024 + L2 LINE L2 3205 3272 0 394 339 74 49 chr3 27801586 27801952 -199722626 + L1MEd LINE L1 3 377 -5742 534 319 86 60 chr3 27802056 27802696 -199721882 + L1MEd LINE L1 594 1270 -5040 944 324 57 18 chr3 27802712 27803154 -199721424 + L1M3c LINE L1 897 1355 -5682 1317 255 21 29 chr3 27803162 27803543 -199721035 + L1M3c LINE L1 1722 2099 -4931 1591 230 14 0 chr3 27803549 27803914 -199720664 + L1P LINE L1 3957 4326 -1820 3317 214 100 7 chr3 27803932 27805512 -199719066 + L1PA15 LINE L1 7 1878 -4985 2248 137 3 8 chr3 27805526 27805892 -199718686 + L1PB1 LINE L1 5784 6147 -4 4905 187 57 16 chr3 27805896 27807652 -199716926 + L1PA15 LINE L1 5041 6868 -13 4615 262 93 14 chr3 27807671 27809997 -199714581 + L1M4c LINE L1 972 3578 -2804 2082 147 0 3 chr3 27809997 27810303 -199714275 + AluSg SINE Alu 2 306 -4 4615 262 93 14 chr3 27810303 27810734 -199713844 + L1M4c LINE L1 3578 3973 -2409 391 121 0 0 chr3 27810731 27810789 -199713789 + L1M4c LINE L1 4439 4496 -1886 * 3583 100 24 4 chr3 27810801 27811302 -199713276 - MER9 LTR ERVK 0 511 1 2319 57 4 0 chr3 27811302 27811583 -199712995 - HERVK9 LTR ERVK 0 5916 5635 15270 71 1 3 chr3 27811679 27813606 -199710972 - HERVK9 LTR ERVK -282 5634 3711 11423 46 1 2 chr3 27813606 27814984 -199709594 - HERVK9 LTR ERVK -3130 2786 1411 3366 98 2 4 chr3 27815085 27815542 -199709036 - HERVK9 LTR ERVK -5460 456 1 3652 101 2 10 chr3 27815542 27816057 -199708521 - MER9 LTR ERVK 0 511 1 2471 225 30 12 chr3 27816057 27816736 -199707842 + L1M4c LINE L1 4502 5192 -1190 5506 119 53 7 chr3 27817080 27817985 -199706593 - L1MA3 LINE L1 0 6305 5359 2780 213 7 18 chr3 27817984 27818544 -199706034 - L1M1 LINE L1 -7011 554 1 * 240 329 13 0 chr3 27818583 27818662 -199705916 + MIR3 SINE MIR 104 183 -25 240 326 179 5 chr3 27819373 27819557 -199705021 - L3b LINE CR1 -120 1463 1248 33 56 0 0 chr3 27819760 27819814 -199704764 + AT_rich Low_complexity Low_complexity 1 54 0 5772 235 38 17 chr3 27819873 27820930 -199703648 + L1M2 LINE L1 2772 3876 -2972 2127 120 0 3 chr3 27820930 27821238 -199703340 + AluSg SINE Alu 1 307 -3 5772 235 38 17 chr3 27821238 27821894 -199702684 + L1M2 LINE L1 3876 4517 -2331 * 5829 217 13 30 chr3 27821892 27821949 -199702629 - L1 LINE L1 -2442 3704 3648 2062 145 132 5 chr3 27821949 27822329 -199702249 - MSTA LTR MaLR 0 428 1 5829 217 13 30 chr3 27822329 27823765 -199700813 - L1 LINE L1 -2498 3648 2190 6439 87 22 1 chr3 27823765 27824449 -199700129 - L1PA14 LINE L1 -2 6159 5491 2188 101 3 0 chr3 27824449 27824736 -199699842 - AluSp SINE Alu -25 288 1 6439 87 22 1 chr3 27824736 27825653 -199698925 - L1PA14 LINE L1 -670 5491 4550 3536 48 0 0 chr3 27825654 27826089 -199698489 + L1PA3 LINE L1 5721 6155 0 3750 179 13 0 chr3 27826156 27826854 -199697724 - L1PA14 LINE L1 -1584 4562 3856 4230 297 176 24 chr3 27826855 27829260 -199695318 + L2 LINE L2 525 3313 0 180 393 57 52 chr3 27829338 27829549 -199695029 - L2 LINE L2 -76 3196 2985 1366 200 53 39 chr3 27829571 27829931 -199694647 + MLT1A1 LTR MaLR 1 365 0 976 291 55 12 chr3 27830053 27830591 -199693987 + MER69 DNA AcHobo 3 596 -630 470 242 81 7 chr3 27830631 27830780 -199693798 + MER69 DNA AcHobo 1884 2043 -483 818 251 52 43 chr3 27830814 27831186 -199693392 - MLT1C LTR MaLR -7 460 1 1192 224 38 72 chr3 27831186 27831516 -199693062 + MER69 DNA AcHobo 2084 2397 -129 2004 127 21 0 chr3 27831516 27831807 -199692771 - AluSx SINE Alu -15 297 1 1192 224 38 72 chr3 27831807 27831919 -199692659 + MER69 DNA AcHobo 2397 2511 -15 2218 109 0 10 chr3 27833981 27834285 -199690293 - AluY SINE Alu -10 301 1 259 234 28 75 chr3 27834801 27834908 -199689670 - MLT1J LTR MaLR -16 533 432 314 295 41 16 chr3 27835068 27835190 -199689388 - MLT1I LTR MaLR -267 142 18 2262 94 0 13 chr3 27836636 27836924 -199687654 + AluY SINE Alu 1 286 -25 255 93 0 0 chr3 27836924 27836967 -199687611 + (CATA)n Simple_repeat Simple_repeat 2 44 0 2262 94 0 13 chr3 27836967 27836987 -199687591 + AluY SINE Alu 286 305 -6 183 313 88 0 chr3 27837319 27837399 -199687179 + MIR SINE MIR 110 196 -66 438 242 152 67 chr3 27837694 27838095 -199686483 - L1ME4a LINE L1 -6 6115 5681 327 281 82 37 chr3 27838898 27839033 -199685545 - L1ME3A LINE L1 -3 6167 6027 2521 65 0 0 chr3 27839142 27839450 -199685128 + AluY SINE Alu 1 308 -3 2404 44 10 0 chr3 27839935 27840230 -199684348 - AluY SINE Alu -13 298 1 1386 222 121 8 chr3 27842652 27843008 -199681570 + MSTD LTR MaLR 1 396 0 187 299 13 52 chr3 27843015 27843092 -199681486 - L2 LINE L2 -13 3300 3227 219 239 33 11 chr3 27843235 27843327 -199681251 + (TA)n Simple_repeat Simple_repeat 1 94 0 629 319 84 31 chr3 27843714 27844097 -199680481 - MLT1J LTR MaLR -36 475 73 1979 165 113 10 chr3 27845289 27845677 -199678901 + MSTA LTR MaLR 1 428 0 244 265 29 0 chr3 27846824 27846892 -199677686 - MER103 DNA DNA -7 159 90 400 293 26 0 chr3 27848304 27848420 -199676158 + MIR SINE MIR 34 152 -56 265 322 105 23 chr3 27849463 27849634 -199674944 - MLT1J LTR MaLR -15 496 312 297 163 139 23 chr3 27849788 27849874 -199674704 - MLT1J LTR MaLR -384 127 32 329 293 12 0 chr3 27849925 27850007 -199674571 - MIR SINE MIR -57 151 69 753 193 28 7 chr3 27850161 27850306 -199674272 + MER5A DNA MER1_type 40 187 -2 1258 186 102 0 chr3 27850702 27850987 -199673591 - MER33 DNA MER1_type 0 324 11 1162 199 50 80 chr3 27851102 27851439 -199673139 + LTR39 LTR ERV1 1 327 -456 2413 47 0 0 chr3 27851490 27851787 -199672791 - L1PA5 LINE L1 -3 6151 5855 633 239 28 22 chr3 27851806 27851986 -199672592 + LTR39 LTR ERV1 600 780 -3 497 190 55 16 chr3 27853486 27853611 -199670967 + MIR SINE MIR 40 177 -67 21 36 0 0 chr3 27853669 27853697 -199670881 + AT_rich Low_complexity Low_complexity 1 28 0 255 61 0 0 chr3 27853697 27853730 -199670848 + (TTA)n Simple_repeat Simple_repeat 3 35 0 243 298 71 36 chr3 27853964 27854048 -199670530 - MIR SINE MIR -91 117 31 1741 185 15 9 chr3 27854169 27854510 -199670068 + MER2 DNA MER2_type 2 344 0 27 0 0 0 chr3 27855394 27855421 -199669157 + AT_rich Low_complexity Low_complexity 1 27 0 661 188 0 0 chr3 27857316 27857433 -199667145 + MER3 DNA MER1_type 51 167 -42 1895 156 15 45 chr3 27857442 27857669 -199666909 + MER3 DNA MER1_type 2233 2445 -179 1897 103 0 60 chr3 27857669 27858008 -199666570 + AluSq SINE Alu 1 321 0 1895 156 15 45 chr3 27858008 27858183 -199666395 + MER3 DNA MER1_type 2445 2624 0 547 312 23 28 chr3 27859185 27859400 -199665178 + MIR SINE MIR 38 251 -11 338 348 32 26 chr3 27859408 27859563 -199665015 - MIR SINE MIR -22 240 85 416 289 58 19 chr3 27859622 27859778 -199664800 + MIR SINE MIR 80 241 -21 315 96 0 0 chr3 27860387 27860439 -199664139 + (T)n Simple_repeat Simple_repeat 1 52 0 854 241 25 10 chr3 27860845 27861044 -199663534 + MER58A DNA MER1_type 2 203 -21 522 241 9 0 chr3 27861056 27861168 -199663410 - MER58A DNA MER1_type 0 113 1 534 236 115 12 chr3 27861203 27861368 -199663210 + MIR SINE MIR 76 257 -5 21 0 0 0 chr3 27861975 27861996 -199662582 + AT_rich Low_complexity Low_complexity 1 21 0 6898 61 9 0 chr3 27862515 27863700 -199660878 - L1PA6 LINE L1 -11 6143 4953 314 315 21 21 chr3 27863940 27864079 -199660499 + MIR SINE MIR 13 150 -65 231 239 161 39 chr3 27864323 27864478 -199660100 + MIR SINE MIR 78 251 -11 2068 138 3 0 chr3 27864923 27865219 -199659359 - AluSx SINE Alu -13 299 3 21 36 0 0 chr3 27865381 27865409 -199659169 + AT_rich Low_complexity Low_complexity 1 28 0 244 314 31 69 chr3 27865418 27865577 -199659001 - MIR SINE MIR -8 254 102 219 139 0 0 chr3 27865584 27865620 -199658958 + (A)n Simple_repeat Simple_repeat 1 36 0 1477 232 115 36 chr3 27865883 27866522 -199658056 - L1ME1 LINE L1 -324 5842 5149 2631 241 89 6 chr3 27866535 27867431 -199657147 - L1ME1 LINE L1 -1549 4597 3627 1243 288 121 18 chr3 27868338 27868834 -199655744 + MLT1H LTR MaLR 1 547 -2 2335 259 46 31 chr3 27869329 27870257 -199654321 - L2 LINE L2 -165 3148 2207 805 136 16 0 chr3 27871234 27871359 -199653219 + FLAM_C SINE Alu 1 127 -6 841 212 28 1 chr3 27872810 27872989 -199651589 - MSTD LTR MaLR 0 396 232 276 30 0 0 chr3 27872989 27873022 -199651556 + (GA)n Simple_repeat Simple_repeat 2 34 0 450 158 46 14 chr3 27873035 27873191 -199651387 - MSTD LTR MaLR -304 124 1 211 273 11 57 chr3 27873427 27873515 -199651063 - MIR SINE MIR -26 236 153 2145 144 0 3 chr3 27873518 27873831 -199650747 + AluSx SINE Alu 1 312 0 183 156 0 0 chr3 27874000 27874032 -199650546 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 6876 68 16 2 chr3 27874100 27875637 -199648941 + L1PA7 LINE L1 4600 6154 0 210 348 54 68 chr3 27875672 27875734 -199648844 - L2 LINE L2 -942 2372 2311 2323 91 0 0 chr3 27875734 27876032 -199648546 + AluSg SINE Alu 1 298 -12 210 348 54 68 chr3 27876032 27876190 -199648388 - L2 LINE L2 -1003 2311 2155 275 258 11 43 chr3 27877558 27877651 -199646927 - L2 LINE L2 -15 3257 3168 315 268 82 10 chr3 27877679 27877776 -199646802 + MER5A DNA MER1_type 9 112 -77 258 344 16 49 chr3 27878145 27878267 -199646311 + L2 LINE L2 2944 3061 -211 1880 256 46 77 chr3 27879033 27879648 -199644930 + MLT1G LTR MaLR 1 590 0 1924 158 0 3 chr3 27879648 27879932 -199644646 + AluSx SINE Alu 1 283 -29 522 304 84 11 chr3 27879993 27880184 -199644394 + MIR SINE MIR 1 205 -57 1782 156 29 58 chr3 27880452 27880799 -199643779 - MER1B DNA MER1_type 0 337 1 651 315 42 12 chr3 27880899 27881140 -199643438 + MIR SINE MIR 13 260 -2 514 250 152 18 chr3 27884024 27884188 -199640390 + MER5A DNA MER1_type 4 189 0 2070 120 10 10 chr3 27884205 27884514 -199640064 + AluSc SINE Alu 1 309 0 10565 197 23 32 chr3 27884749 27887964 -199636614 - L1MA3 LINE L1 0 7724 4484 822 217 14 57 chr3 27887964 27888204 -199636374 - AluJb SINE Alu 0 312 96 10565 197 23 32 chr3 27888204 27889790 -199634788 - L1MA3 LINE L1 -3240 4484 2884 539 119 0 36 chr3 27889789 27889873 -199634705 - L1MA3 LINE L1 -5992 1573 1493 * 8522 184 18 9 chr3 27889980 27891484 -199633094 - L1MA3 LINE L1 -6030 1535 19 491 263 25 0 chr3 27892444 27892562 -199632016 - MIR SINE MIR -71 191 71 2385 303 58 57 chr3 27893140 27894307 -199630271 - L2 LINE L2 -31 3282 2127 2268 79 3 20 chr3 27894307 27894610 -199629968 + AluSg SINE Alu 1 298 -12 2385 303 58 57 chr3 27894610 27894754 -199629824 - L2 LINE L2 -1186 2127 1985 635 292 86 27 chr3 27895529 27896322 -199628256 + L1MCc LINE L1 1157 1990 -4887 674 254 10 31 chr3 27896375 27896405 -199628173 + L1ME2 LINE L1 5949 5978 -186 2408 215 25 129 chr3 27896405 27897177 -199627401 + LTR8 LTR ERV1 1 691 0 674 254 10 31 chr3 27897177 27897339 -199627239 + L1ME2 LINE L1 5978 6137 -27 630 269 7 0 chr3 27897371 27897516 -199627062 - L2 LINE L2 -1323 1991 1846 369 0 0 0 chr3 27897938 27897979 -199626599 + (CA)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr3 27898364 27898387 -199626191 + AT_rich Low_complexity Low_complexity 1 23 0 230 317 131 45 chr3 27899350 27899571 -199625007 - MIR SINE MIR -9 253 14 344 156 13 13 chr3 27899635 27899712 -199624866 - L1MC4 LINE L1 -974 7068 6992 251 138 21 149 chr3 27899749 27899843 -199624735 - HAL1 LINE L1 -2310 197 116 201 315 41 41 chr3 27902592 27902665 -199621913 - MIR SINE MIR -187 75 3 289 314 103 54 chr3 27903469 27903654 -199620924 + MLT1J LTR MaLR 1 194 -317 313 252 55 16 chr3 27904173 27904300 -199620278 + MIR SINE MIR 99 230 -32 1734 150 11 21 chr3 27904656 27904943 -199619635 - AluJb SINE Alu 0 312 29 23 0 0 0 chr3 27905154 27905177 -199619401 + AT_rich Low_complexity Low_complexity 1 23 0 2316 81 13 0 chr3 27905345 27905652 -199618926 - AluY SINE Alu 0 311 1 206 309 165 0 chr3 27905855 27905952 -199618626 + MIR SINE MIR 132 244 -18 446 174 62 76 chr3 27906709 27906853 -199617725 - L2 LINE L2 -10 3303 3162 359 289 137 32 chr3 27907313 27907503 -199617075 - MIR SINE MIR -31 231 22 186 179 0 26 chr3 27907511 27907550 -199617028 - L2 LINE L2 0 3272 3235 5246 157 59 18 chr3 27907578 27908746 -199615832 + L1MA7 LINE L1 5077 6291 0 2247 105 0 7 chr3 27909470 27909774 -199614804 - AluSg SINE Alu -7 303 2 22 35 0 0 chr3 27911355 27911384 -199613194 + AT_rich Low_complexity Low_complexity 1 29 0 283 311 92 46 chr3 27912749 27912945 -199611633 + L2 LINE L2 2594 2798 -516 2175 105 7 20 chr3 27913008 27913313 -199611265 - AluSg SINE Alu -9 301 1 189 229 83 0 chr3 27913605 27913653 -199610925 + L2 LINE L2 3262 3313 0 188 380 25 8 chr3 27913651 27913772 -199610806 + MIR SINE MIR 131 253 -9 * 231 132 0 0 chr3 27914229 27914267 -199610311 - L1MA9 LINE L1 -2 6310 6273 828 151 115 11 chr3 27914267 27914386 -199610192 - L1MA9 LINE L1 -22 6290 6185 333 0 0 0 chr3 27914386 27914423 -199610155 + (TG)n Simple_repeat Simple_repeat 2 38 0 828 151 115 11 chr3 27914423 27914505 -199610073 - L1MA9 LINE L1 -127 6185 6067 343 231 105 70 chr3 27914581 27914724 -199609854 + MIR SINE MIR 65 212 -50 2534 110 28 0 chr3 27915550 27915942 -199608636 + L1MA1 LINE L1 5900 6302 0 23 0 0 0 chr3 27915942 27915965 -199608613 + AT_rich Low_complexity Low_complexity 1 23 0 1019 175 0 55 chr3 27916188 27916388 -199608190 - MER5A DNA MER1_type 0 189 1 765 271 49 0 chr3 27917391 27917594 -199606984 - MER58A DNA MER1_type -11 213 1 756 197 83 31 chr3 27917607 27917800 -199606778 + MER3 DNA MER1_type 6 208 -1 242 367 25 17 chr3 27918046 27918166 -199606412 - L2 LINE L2 0 3313 3193 344 264 58 61 chr3 27918167 27918326 -199606252 - L1M4 LINE L1 -1620 5945 5794 1555 105 8 29 chr3 27918326 27918409 -199606169 + AluSg SINE Alu 47 130 -192 189 0 0 0 chr3 27918409 27918430 -199606148 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1555 105 8 29 chr3 27918430 27918627 -199605951 + AluSg SINE Alu 130 322 0 344 264 58 61 chr3 27918627 27918704 -199605874 - L1M4 LINE L1 -1771 5794 5718 25 31 0 0 chr3 27918898 27918930 -199605648 + AT_rich Low_complexity Low_complexity 1 32 0 443 116 27 89 chr3 27919489 27919601 -199604977 - L1MA7 LINE L1 -2 6289 6185 629 204 123 54 chr3 27920363 27920623 -199603955 - L1M4 LINE L1 -4110 3455 3178 613 185 9 0 chr3 27920626 27920734 -199603844 + FLAM_A SINE Alu 2 110 -32 1033 221 72 13 chr3 27920745 27921052 -199603526 - L1M4 LINE L1 -4370 3195 2871 2240 185 13 111 chr3 27921060 27921791 -199602787 + L1MA8 LINE L1 3461 4125 -3440 * 4154 154 26 16 chr3 27921788 27922554 -199602024 + L1MA8 LINE L1 6859 7632 -78 231 152 30 30 chr3 27922656 27922722 -199601856 + (TTATA)n Simple_repeat Simple_repeat 1 66 0 196 405 26 9 chr3 27922880 27922996 -199601582 + L2 LINE L2 2935 3052 -220 1920 134 3 0 chr3 27923240 27923524 -199601054 + AluSx SINE Alu 27 311 -1 209 385 12 0 chr3 27923901 27923984 -199600594 + L2 LINE L2 3230 3313 0 358 286 48 0 chr3 27924571 27924676 -199599902 - L1ME3A LINE L1 0 6170 6061 955 226 10 5 chr3 27924743 27924947 -199599631 - AluJo SINE Alu -22 290 86 8165 210 36 7 chr3 27924966 27927474 -199597104 - L1MA4A LINE L1 -26 6277 3665 324 0 0 0 chr3 27927474 27927510 -199597068 + (TG)n Simple_repeat Simple_repeat 1 36 0 8165 210 36 7 chr3 27927510 27927821 -199596757 - L1MA4A LINE L1 -2638 3665 3364 897 271 69 3 chr3 27927815 27928103 -199596475 - L1ME3A LINE L1 -184 5986 5680 * 188 233 117 17 chr3 27928817 27928877 -199595701 + MER5A DNA MER1_type 40 105 -84 1176 201 36 52 chr3 27929002 27929331 -199595247 - MER33 DNA MER1_type 0 324 1 243 262 24 12 chr3 27929333 27929417 -199595161 + (TAAA)n Simple_repeat Simple_repeat 4 88 0 199 91 23 23 chr3 27929640 27929684 -199594894 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 184 322 100 78 chr3 27929745 27929925 -199594653 - MER5A DNA MER1_type 0 189 6 184 380 105 25 chr3 27930262 27930462 -199594116 - L2 LINE L2 -163 3109 2894 388 299 16 0 chr3 27930552 27930679 -199593899 - MER94 DNA DNA -1 133 5 211 290 32 0 chr3 27930852 27930914 -199593664 + MIR SINE MIR 93 156 -106 743 219 91 91 chr3 27930922 27931251 -199593327 - MER46C DNA MER2_type -5 333 5 229 196 0 0 chr3 27931671 27931717 -199592861 + A-rich Low_complexity Low_complexity 3 48 0 692 176 206 41 chr3 27933356 27933526 -199591052 + MER20 DNA MER1_type 22 219 0 22 35 0 0 chr3 27933529 27933558 -199591020 + AT_rich Low_complexity Low_complexity 1 29 0 387 349 24 0 chr3 27933679 27933848 -199590730 - MIR SINE MIR -37 225 53 2460 65 0 19 chr3 27934197 27934507 -199590071 - AluY SINE Alu -7 304 1 333 258 129 11 chr3 27934558 27934651 -199589927 - MER5A DNA MER1_type -83 106 3 237 245 0 0 chr3 27934651 27934700 -199589878 - MER105 DNA DNA -149 55 7 959 307 102 21 chr3 27935427 27935857 -199588721 - LTR33A LTR ERVL 0 523 59 579 313 39 0 chr3 27936066 27936248 -199588330 + MIR SINE MIR 58 246 -16 447 225 0 0 chr3 27937495 27937575 -199587003 + Tigger3b DNA MER2_type 2 81 -1150 13015 198 74 9 chr3 27937577 27944150 -199580428 + L1PA14 LINE L1 1 7597 -2 6537 151 30 7 chr3 27944150 27945282 -199579296 + Tigger3b DNA MER2_type 73 1230 -1 294 243 7 132 chr3 27945760 27945896 -199578682 - L2 LINE L2 -4 3268 3150 2645 93 3 0 chr3 27946451 27946805 -199577773 + THE1A LTR MaLR 1 355 0 223 364 52 0 chr3 27947085 27947162 -199577416 + MIR SINE MIR 2 82 -180 22 0 0 0 chr3 27947302 27947324 -199577254 + AT_rich Low_complexity Low_complexity 1 22 0 253 242 0 32 chr3 27947356 27947418 -199577160 - MER69 DNA AcHobo -2431 95 36 580 116 0 0 chr3 27947428 27947514 -199577064 - AluSc SINE Alu -8 301 216 12159 175 33 6 chr3 27948260 27950355 -199574223 + L1PA15-16 LINE L1 1 2153 -4696 2050 174 25 28 chr3 27951402 27951799 -199572779 - MSTD LTR MaLR 0 396 1 199 200 267 0 chr3 27952284 27952344 -199572234 + L2 LINE L2 3238 3313 0 1939 121 50 0 chr3 27952471 27952753 -199571825 - AluSx SINE Alu -16 296 1 1428 206 60 68 chr3 27953442 27953839 -199570739 + MSTD LTR MaLR 3 396 0 706 191 166 50 chr3 27954215 27954535 -199570043 + L1MC5 LINE L1 7179 7535 -426 268 323 0 0 chr3 27954576 27954653 -199569925 - MIR SINE MIR -53 155 78 242 232 12 85 chr3 27955832 27955914 -199568664 - L2 LINE L2 -12 3301 3226 5698 172 26 9 chr3 27956359 27957965 -199566613 - L1PA15 LINE L1 -2 6163 4533 1432 152 90 166 chr3 27957964 27958248 -199566330 - L1 LINE L1 -1980 4166 3943 * 2885 137 25 6 chr3 27958248 27958724 -199565854 + L1PA14 LINE L1 5674 6158 -3 1432 152 90 166 chr3 27958724 27958986 -199565592 - L1 LINE L1 -2203 3943 3662 3350 119 4 86 chr3 27958987 27959140 -199565438 + L1MA5A LINE L1 5671 5835 -462 2141 133 0 0 chr3 27959140 27959434 -199565144 - AluSx SINE Alu -18 294 1 3350 119 4 86 chr3 27959434 27959958 -199564620 + L1MA5A LINE L1 5835 6293 -4 4784 191 18 9 chr3 27959965 27960930 -199563648 + L1MA8 LINE L1 5319 6291 0 325 257 178 17 chr3 27961206 27961383 -199563195 - L1P LINE L1 -2302 3844 3641 4386 187 38 9 chr3 27961550 27963081 -199561497 - L1PB4 LINE L1 -1 6155 4581 215 200 33 0 chr3 27963435 27963536 -199561042 + (TA)n Simple_repeat Simple_repeat 1 104 0 451 286 9 27 chr3 27963584 27963804 -199560774 + L1M4 LINE L1 2249 2464 -3682 327 272 61 22 chr3 27963819 27964047 -199560531 + L1M4 LINE L1 2541 2777 -3369 204 97 0 0 chr3 27964795 27964826 -199559752 + (A)n Simple_repeat Simple_repeat 1 31 0 1244 260 44 0 chr3 27965984 27966323 -199558255 - L1ME3A LINE L1 0 6170 5817 2467 30 0 14 chr3 27966425 27966720 -199557858 + AluY SINE Alu 1 291 -20 590 305 85 31 chr3 27966769 27967156 -199557422 - L1ME3A LINE L1 -320 5801 5394 1437 281 91 43 chr3 27967272 27968386 -199556192 - HAL1 LINE L1 -100 2407 1077 1113 212 68 0 chr3 27968498 27968657 -199555921 - AluJo SINE Alu -17 295 148 198 0 0 0 chr3 27968657 27968679 -199555899 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1113 212 68 0 chr3 27968679 27968749 -199555829 - AluJo SINE Alu -159 153 49 1685 129 12 0 chr3 27968749 27968997 -199555581 - AluSg SINE Alu -59 251 1 437 272 92 35 chr3 27969028 27969256 -199555322 - L1MC3 LINE L1 -365 7420 7180 837 207 79 26 chr3 27969282 27969509 -199555069 - L1MC3 LINE L1 -799 6986 6748 468 175 45 19 chr3 27969509 27969663 -199554915 + CT-rich Low_complexity Low_complexity 2 159 0 441 36 0 0 chr3 27969705 27969760 -199554818 + (TA)n Simple_repeat Simple_repeat 1 55 0 2430 123 26 21 chr3 27970564 27970988 -199553590 + L1PB2 LINE L1 5724 6149 -2 2380 225 83 55 chr3 27971010 27971591 -199552987 - L1ME2 LINE L1 -24 6140 5577 2151 81 0 14 chr3 27971591 27971874 -199552704 + AluY SINE Alu 1 279 -32 212 77 26 0 chr3 27971875 27971914 -199552664 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 2380 225 83 55 chr3 27971914 27972740 -199551838 - L1ME2 LINE L1 -586 5578 4682 491 210 30 10 chr3 27973244 27973344 -199551234 + MER81 DNA DNA 13 114 0 34 42 0 0 chr3 27973411 27973459 -199551119 + AT_rich Low_complexity Low_complexity 1 48 0 5964 104 26 5 chr3 27973845 27975015 -199549563 - L1PA14 LINE L1 -5 6156 4969 610 198 13 13 chr3 27975015 27975172 -199549406 - L1PA14 LINE L1 -1636 4510 4354 303 333 0 9 chr3 27975174 27975279 -199549299 + CT-rich Low_complexity Low_complexity 3 106 0 308 308 12 0 chr3 27976096 27976201 -199548377 - MLT1G LTR MaLR -458 109 3 31 58 0 0 chr3 27976295 27976347 -199548231 + AT_rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chr3 27977341 27977369 -199547209 + AT_rich Low_complexity Low_complexity 1 28 0 1480 237 113 11 chr3 27978184 27978660 -199545918 - MLT1H LTR MaLR -6 543 19 434 290 68 11 chr3 27979928 27980104 -199544474 + MIR SINE MIR 48 233 -29 619 332 27 16 chr3 27981060 27981316 -199543262 - MIR SINE MIR -2 260 2 485 275 9 0 chr3 27981896 27982005 -199542573 - MLT1F1 LTR MaLR -72 495 386 4950 135 8 30 chr3 27982078 27982879 -199541699 + LTR39 LTR ERV1 1 783 0 231 261 0 0 chr3 27982894 27982940 -199541638 - MER63 DNA MER1_type -25 1035 990 286 153 306 0 chr3 27982954 27983026 -199541552 - MER63 DNA MER1_type -85 751 32 453 254 26 8 chr3 27983096 27983275 -199541303 - MLT1G1 LTR MaLR -281 274 8 1601 226 113 26 chr3 27983634 27984095 -199540483 - MLT1D LTR MaLR -4 501 1 207 281 16 0 chr3 27984287 27984351 -199540227 + (TATATG)n Simple_repeat Simple_repeat 4 68 0 551 259 77 24 chr3 27984440 27984687 -199539891 - L1ME LINE L1 -312 5809 5550 2439 70 0 29 chr3 27984800 27985113 -199539465 + AluY SINE Alu 1 304 -7 560 259 82 65 chr3 27985368 27985600 -199538978 - MLT1J1 LTR MaLR -11 435 200 1104 267 65 41 chr3 27985631 27986154 -199538424 - MLT1E LTR MaLR -2 591 2 474 273 71 13 chr3 27986163 27986317 -199538261 - MLT1J2 LTR MaLR -287 163 1 2239 112 0 0 chr3 27986450 27986745 -199537833 - AluSc SINE Alu -14 295 1 375 275 114 8 chr3 27987384 27987515 -199537063 - MLT1G LTR MaLR -10 580 436 330 475 84 44 chr3 27987512 27987786 -199536792 - MLT1G LTR MaLR -305 285 1 * 2243 119 0 3 chr3 27988056 27988358 -199536220 + AluSg SINE Alu 1 301 -9 551 255 39 25 chr3 27988628 27988832 -199535746 - MLT1L LTR MaLR 0 615 409 240 240 29 67 chr3 27989117 27989221 -199535357 - L2 LINE L2 -260 3012 2913 21 0 0 0 chr3 27989937 27989958 -199534620 + AT_rich Low_complexity Low_complexity 1 21 0 9559 185 39 14 chr3 27990112 27990799 -199533779 + L1PA15 LINE L1 3053 3722 -2443 205 26 26 51 chr3 27990799 27990838 -199533740 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 9559 185 39 14 chr3 27990838 27993206 -199531372 + L1PA15 LINE L1 3722 6163 -2 42 20 0 0 chr3 27993549 27993598 -199530980 + AT_rich Low_complexity Low_complexity 1 49 0 305 354 34 34 chr3 27994364 27994511 -199530067 - L2 LINE L2 -4 3268 3122 641 289 126 28 chr3 27994882 27995207 -199529371 + MLT1K LTR MaLR 215 571 -17 275 341 98 18 chr3 27995231 27995395 -199529183 - L2 LINE L2 -182 3090 2914 234 260 130 13 chr3 27995629 27995706 -199528872 - MLT1L LTR MaLR -98 517 432 302 267 0 40 chr3 27995873 27995974 -199528604 - MLT1L LTR MaLR -315 300 204 13040 136 68 22 chr3 27996223 27997962 -199526616 - Tigger1 DNA MER2_type 0 2418 547 2413 54 0 27 chr3 27997962 27998258 -199526320 + AluY SINE Alu 1 288 -23 13040 136 68 22 chr3 27998258 27998806 -199525772 - Tigger1 DNA MER2_type -1871 547 26 312 269 60 67 chr3 27999058 27999145 -199525433 - MIR SINE MIR -70 192 105 2648 35 0 6 chr3 27999145 27999456 -199525122 - AluY SINE Alu -2 309 1 312 269 60 67 chr3 27999456 27999502 -199525076 - MIR SINE MIR -157 105 60 257 365 47 20 chr3 27999572 27999704 -199524874 + MIR SINE MIR 6 144 -118 192 40 0 0 chr3 27999704 27999729 -199524849 + (ATG)n Simple_repeat Simple_repeat 1 25 0 257 365 47 20 chr3 27999729 27999744 -199524834 + MIR SINE MIR 144 157 -105 916 181 13 86 chr3 28000011 28000243 -199524335 - MER20 DNA MER1_type -2 217 3 952 311 93 7 chr3 28001918 28002326 -199522252 - L2 LINE L2 -612 2702 2260 183 80 0 0 chr3 28002998 28003023 -199521555 + (ATGGTG)n Simple_repeat Simple_repeat 2 26 0 560 307 34 29 chr3 28003032 28003270 -199521308 - MIR SINE MIR -16 246 8 359 236 94 0 chr3 28003284 28003390 -199521188 - MIR SINE MIR -94 168 53 438 296 126 13 chr3 28003495 28003725 -199520853 - LTR33A LTR ERVL -4 519 264 429 310 22 33 chr3 28003988 28004172 -199520406 - MER5A DNA MER1_type -7 182 1 1518 188 3 30 chr3 28004504 28004807 -199519771 + AluJb SINE Alu 11 305 -7 299 336 19 47 chr3 28006637 28006744 -199517834 + L2 LINE L2 3151 3254 -18 719 193 0 7 chr3 28006869 28007014 -199517564 - L1MB7 LINE L1 -19 6165 6022 351 0 0 0 chr3 28007014 28007053 -199517525 + (CA)n Simple_repeat Simple_repeat 1 39 0 523 248 59 0 chr3 28007056 28007209 -199517369 + L1M4 LINE L1 4265 4426 -1720 375 23 0 0 chr3 28007217 28007261 -199517317 + (TG)n Simple_repeat Simple_repeat 2 45 0 608 272 6 12 chr3 28007267 28007436 -199517142 - L1 LINE L1 -1903 4243 4076 364 242 100 17 chr3 28008756 28008876 -199515702 - MER103 DNA DNA -29 137 8 1222 77 0 18 chr3 28009879 28010047 -199514531 - AluY SINE Alu 0 311 147 187 325 81 41 chr3 28010720 28010843 -199513735 + L3 LINE CR1 1449 1576 -1 252 86 0 0 chr3 28011995 28012030 -199512548 + (TA)n Simple_repeat Simple_repeat 2 36 0 41678 60 6 0 chr3 28012533 28018633 -199505945 - L1PA5 LINE L1 -8 6146 11 187 296 0 0 chr3 28019331 28019375 -199505203 + MER5A DNA MER1_type 22 65 -124 254 176 0 129 chr3 28020947 28021032 -199503546 + MIR SINE MIR 128 201 -61 524 325 135 31 chr3 28021600 28022083 -199502495 + L2 LINE L2 2225 2757 -557 284 331 158 66 chr3 28022222 28022539 -199502039 + L2 LINE L2 2927 3272 0 387 279 128 11 chr3 28023085 28023264 -199501314 - L1ME3A LINE L1 -219 5934 5735 265 280 30 23 chr3 28023265 28023397 -199501181 - L1ME3A LINE L1 -2406 3723 3591 383 285 39 64 chr3 28023571 28023852 -199500726 - L1ME3A LINE L1 -3171 2958 2685 419 292 81 0 chr3 28023923 28024084 -199500494 - L1ME3A LINE L1 -3630 2499 2326 3371 119 8 0 chr3 28024453 28024973 -199499605 - L1PA15 LINE L1 -137 6028 5505 903 106 8 0 chr3 28024973 28025101 -199499477 + L1PA15 LINE L1 6031 6163 -2 798 306 87 46 chr3 28025148 28025989 -199498589 - L1MEd LINE L1 -4583 1546 713 278 263 62 0 chr3 28026006 28026086 -199498492 - L1MEd LINE L1 -5466 653 569 321 89 0 0 chr3 28027712 28027757 -199496821 + (TC)n Simple_repeat Simple_repeat 1 45 0 2030 107 4 0 chr3 28028152 28028422 -199496156 - AluSx SINE Alu -13 299 29 315 0 0 0 chr3 28029047 28029082 -199495496 + (TA)n Simple_repeat Simple_repeat 1 35 0 341 289 33 11 chr3 28029355 28029445 -199495133 - MIR SINE MIR -157 105 14 1610 268 79 34 chr3 28029591 28029899 -199494679 - MLT1E LTR MaLR 0 593 301 1604 193 46 44 chr3 28029899 28030288 -199494290 + MLT1B LTR MaLR 1 390 0 1610 268 79 34 chr3 28030288 28030546 -199494032 - MLT1E LTR MaLR -292 301 1 24 0 0 0 chr3 28031250 28031274 -199493304 + AT_rich Low_complexity Low_complexity 1 24 0 183 264 0 57 chr3 28032182 28032235 -199492343 - L2 LINE L2 -3 3269 3220 201 353 29 0 chr3 28032483 28032551 -199492027 - L3 LINE CR1 -7 1570 1501 367 312 51 38 chr3 28032871 28033028 -199491550 + MLT1H1 LTR MaLR 45 203 -352 901 137 15 0 chr3 28033043 28033174 -199491404 + AluSq/x SINE Alu 1 133 -179 342 275 86 31 chr3 28033179 28033463 -199491115 + MLT1H1 LTR MaLR 161 524 -18 263 300 0 0 chr3 28033566 28033616 -199490962 + L3 LINE CR1 1517 1566 -11 203 394 0 0 chr3 28034504 28034598 -199489980 + L2 LINE L2 3220 3313 0 1930 160 41 62 chr3 28035207 28035645 -199488933 + LTR3 LTR ERVK 1 429 0 423 143 14 0 chr3 28035672 28035742 -199488836 + LTR3b LTR ERVK 422 492 -8 225 238 0 0 chr3 28035828 28035870 -199488708 + polypyrimidine Low_complexity Low_complexity 1 42 0 243 219 14 0 chr3 28036959 28037032 -199487546 + L1MC4 LINE L1 6630 6703 -1339 276 130 0 0 chr3 28037032 28037078 -199487500 + (CA)n Simple_repeat Simple_repeat 2 47 0 22 70 0 0 chr3 28037644 28037687 -199486891 + AT_rich Low_complexity Low_complexity 1 43 0 352 324 39 10 chr3 28038055 28038157 -199486421 - L2 LINE L2 -12 3260 3156 2578 198 26 20 chr3 28038269 28038809 -199485769 - MER67A LTR ERV1 0 543 1 324 314 68 0 chr3 28038833 28038951 -199485627 + MIR SINE MIR 65 190 -72 198 0 0 0 chr3 28039421 28039443 -199485135 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr3 28041274 28041295 -199483283 + AT_rich Low_complexity Low_complexity 1 21 0 1746 176 36 9 chr3 28041492 28041822 -199482756 - MER2 DNA MER2_type -5 340 2 1156 169 109 57 chr3 28042697 28043046 -199481532 + MLT1A2 LTR MaLR 1 367 -7 2616 151 16 0 chr3 28043535 28043959 -199480619 - MSTB1 LTR MaLR -1 431 1 811 274 16 40 chr3 28043966 28044218 -199480360 - MIR SINE MIR -10 252 7 337 325 120 16 chr3 28044985 28045176 -199479402 + MIR SINE MIR 52 262 0 218 240 21 62 chr3 28046119 28046215 -199478363 + MIR SINE MIR 116 207 -55 183 379 28 64 chr3 28046844 28047126 -199477452 - L2 LINE L2 -804 2510 2239 325 188 24 0 chr3 28049876 28049961 -199474617 + CT-rich Low_complexity Low_complexity 2 88 0 929 225 64 17 chr3 28050011 28050371 -199474207 - Charlie4a DNA MER1_type -83 425 49 297 323 97 19 chr3 28051052 28051207 -199473371 - MIR SINE MIR -5 257 91 2968 162 15 2 chr3 28051229 28051755 -199472823 + MER39B LTR ERV1 121 653 0 23 33 0 0 chr3 28052000 28052030 -199472548 + AT_rich Low_complexity Low_complexity 1 30 0 1182 259 35 27 chr3 28053591 28053961 -199470617 + MLT1H LTR MaLR 45 417 -132 249 300 64 29 chr3 28054213 28054353 -199470225 - L2 LINE L2 -453 2861 2717 273 289 0 21 chr3 28055137 28055234 -199469344 - MLT1L LTR MaLR -369 246 152 190 370 93 37 chr3 28055422 28055584 -199468994 + L2 LINE L2 2905 3075 -197 2393 121 5 45 chr3 28055850 28056229 -199468349 - THE1B LTR MaLR 0 364 1 11511 100 6 1 chr3 28056229 28057801 -199466777 - THE1B-int LTR MaLR 0 1580 1 2387 123 5 35 chr3 28057801 28058176 -199466402 - THE1B LTR MaLR 0 364 1 687 208 106 106 chr3 28059562 28059735 -199464843 + MER5C DNA MER1_type 1 176 -148 9879 30 4 181 chr3 28059735 28061397 -199463181 - SVA Other Other -4 1382 15 687 208 106 106 chr3 28061397 28061545 -199463033 + MER5C DNA MER1_type 175 322 -2 348 222 78 22 chr3 28061827 28061917 -199462661 + L2 LINE L2 3173 3267 -5 362 313 27 7 chr3 28062560 28062707 -199461871 + MIR SINE MIR 92 241 -21 759 159 94 0 chr3 28062886 28063087 -199461491 - Charlie5 DNA MER1_type 0 2619 2400 364 286 16 16 chr3 28063816 28063942 -199460636 - L1ME LINE L1 -422 5699 5574 2643 123 20 27 chr3 28065215 28065622 -199458956 + MLT2A1 LTR ERVL 1 406 -38 348 24 0 0 chr3 28065622 28065663 -199458915 + (TA)n Simple_repeat Simple_repeat 1 41 0 2643 123 20 27 chr3 28065663 28065702 -199458876 + MLT2A1 LTR ERVL 406 444 0 6635 74 5 0 chr3 28065702 28066585 -199457993 + HERVL-A1 LTR ERVL 1 887 -4767 * 17055 138 12 23 chr3 28066579 28067479 -199457099 - ERVL LTR ERVL -362 5402 4494 200 35 35 0 chr3 28067479 28067508 -199457070 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 7492 29 0 0 chr3 28067508 28069115 -199455463 - L1PA4 LINE L1 -16 6139 4534 17055 138 12 23 chr3 28069115 28071068 -199453510 - ERVL LTR ERVL -1268 4496 2579 2694 53 37 0 chr3 28071050 28071424 -199453154 + HERVL-A1 LTR ERVL 5267 5654 0 * 3085 93 18 9 chr3 28071424 28071864 -199452714 + MLT2A1 LTR ERVL 1 444 0 203 287 63 33 chr3 28073105 28073243 -199451335 + MIR SINE MIR 18 160 -56 213 132 0 0 chr3 28073691 28073729 -199450849 + (TG)n Simple_repeat Simple_repeat 2 39 0 1444 258 76 31 chr3 28074821 28075297 -199449281 - MER119 DNA MER1_type -35 548 52 202 261 21 127 chr3 28076014 28076105 -199448473 + MIR3 SINE MIR 79 151 -57 2348 104 21 27 chr3 28076105 28076480 -199448098 - THE1C LTR MaLR 0 375 3 202 261 21 127 chr3 28076480 28076530 -199448048 + MIR3 SINE MIR 151 205 -3 207 184 0 0 chr3 28077269 28077307 -199447271 + (TG)n Simple_repeat Simple_repeat 2 39 0 29 0 0 0 chr3 28077340 28077369 -199447209 + AT_rich Low_complexity Low_complexity 1 29 0 307 261 102 0 chr3 28077588 28077676 -199446902 + MER5A DNA MER1_type 9 105 -84 485 210 80 56 chr3 28078838 28079000 -199445578 - L1ME3 LINE L1 -152 6010 5845 462 238 46 13 chr3 28079105 28079256 -199445322 - L1ME3 LINE L1 -363 5801 5646 1789 264 69 40 chr3 28079297 28080252 -199444326 - L1ME3 LINE L1 -622 5542 4556 29 0 0 0 chr3 28080590 28080619 -199443959 + AT_rich Low_complexity Low_complexity 1 29 0 283 313 246 28 chr3 28080786 28081144 -199443434 + L2 LINE L2 2878 3313 0 26 30 0 0 chr3 28081310 28081343 -199443235 + AT_rich Low_complexity Low_complexity 1 33 0 407 309 1 55 chr3 28081380 28081565 -199443013 + MIR SINE MIR 38 212 -50 309 217 0 0 chr3 28081840 28081900 -199442678 - MIR SINE MIR -122 140 81 817 148 0 0 chr3 28082419 28082547 -199442031 - MER31A LTR ERV1 0 485 358 415 198 37 0 chr3 28082705 28082786 -199441792 + MER2 DNA MER2_type 1 84 -261 243 263 0 18 chr3 28082790 28082847 -199441731 + MER2 DNA MER2_type 290 345 0 267 236 100 36 chr3 28082855 28082965 -199441613 + MLT1I LTR MaLR 27 143 -266 722 315 131 33 chr3 28084400 28084929 -199439649 - L2 LINE L2 0 3313 2738 555 231 57 90 chr3 28084930 28085033 -199439545 - L1MC5 LINE L1 -30 7931 7826 1540 128 11 7 chr3 28085033 28085307 -199439271 + L1MA4 LINE L1 6020 6294 -6 555 231 57 90 chr3 28085307 28085537 -199439041 - L1MC5 LINE L1 -135 7826 7609 1082 250 229 68 chr3 28085585 28086289 -199438289 - L2 LINE L2 -562 2752 1936 253 351 84 13 chr3 28086318 28086472 -199438106 - L2 LINE L2 -1 3312 3148 1529 174 65 0 chr3 28087473 28087748 -199436830 - AluJo SINE Alu -19 293 1 6528 242 83 50 chr3 28087754 28088224 -199436354 + L1MD2 LINE L1 2043 2496 -4257 1047 193 0 17 chr3 28088224 28088457 -199436121 + L1MA6 LINE L1 6071 6299 -1 6528 242 83 50 chr3 28088457 28089801 -199434777 + L1MD2 LINE L1 2496 3794 -2959 2005 146 7 0 chr3 28089801 28090096 -199434482 + AluSx SINE Alu 1 297 -15 6528 242 83 50 chr3 28090096 28092059 -199432519 + L1MD2 LINE L1 3794 5691 -1062 2074 146 0 7 chr3 28092059 28092367 -199432211 + AluSx SINE Alu 6 311 -1 6528 242 83 50 chr3 28092367 28092740 -199431838 + L1MD2 LINE L1 5691 6050 -703 2167 118 3 10 chr3 28092740 28093053 -199431525 + AluSq SINE Alu 1 311 -2 6528 242 83 50 chr3 28093053 28093299 -199431279 + L1MD2 LINE L1 6050 6286 -467 2132 164 80 68 chr3 28093299 28093788 -199430790 + LTR42 LTR ERVL 1 495 0 6528 242 83 50 chr3 28093788 28093910 -199430668 + L1MD2 LINE L1 6286 6736 -17 23 0 0 0 chr3 28094021 28094044 -199430534 + AT_rich Low_complexity Low_complexity 1 23 0 235 371 61 15 chr3 28094618 28094750 -199429828 + MIR3 SINE MIR 20 157 -51 1242 190 126 26 chr3 28095074 28095384 -199429194 + MER2 DNA MER2_type 3 343 -1 1509 171 146 34 chr3 28095407 28095792 -199428786 + MSTA LTR MaLR 1 428 0 22 35 0 0 chr3 28096754 28096783 -199427795 + AT_rich Low_complexity Low_complexity 1 29 0 569 321 29 41 chr3 28097371 28097614 -199426964 + MIR SINE MIR 20 259 -3 415 296 132 0 chr3 28099021 28099173 -199425405 - MLT1K LTR MaLR -17 571 400 441 204 146 0 chr3 28099269 28099406 -199425172 + L1ME LINE L1 5254 5410 -756 249 254 0 0 chr3 28099407 28099478 -199425100 + L1ME LINE L1 5454 5521 -645 * 3272 256 67 61 chr3 28099468 28100033 -199424545 + L1ME2 LINE L1 3190 3750 -2414 313 219 0 98 chr3 28100033 28100115 -199424463 + FLAM_A SINE Alu 3 76 -57 3272 256 67 61 chr3 28100115 28100127 -199424451 + L1ME2 LINE L1 3750 3760 -2404 198 0 0 0 chr3 28100127 28100149 -199424429 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 3272 256 67 61 chr3 28100149 28102451 -199422127 + L1ME2 LINE L1 3760 6158 -6 233 358 0 55 chr3 28103167 28103276 -199421302 + MIR3 SINE MIR 79 181 -27 224 275 156 0 chr3 28104099 28104208 -199420370 + L2 LINE L2 3124 3249 -64 24 67 0 0 chr3 28104222 28104267 -199420311 + AT_rich Low_complexity Low_complexity 1 45 0 827 148 61 8 chr3 28105741 28105913 -199418665 + Ricksha DNA DNA 3 289 -1977 * 5636 170 32 29 chr3 28105911 28107298 -199417280 + Ricksha DNA DNA 1821 3246 -25 634 261 11 23 chr3 28107362 28107538 -199417040 + MER45A DNA AcHobo 5 178 0 189 313 234 19 chr3 28109207 28109337 -199415241 + MIR SINE MIR 2 103 -159 844 292 47 35 chr3 28109337 28109738 -199414840 - MLT1I LTR MaLR -3 406 1 189 313 234 19 chr3 28109738 28109821 -199414757 + MIR SINE MIR 103 261 -1 812 163 108 0 chr3 28110602 28110768 -199413810 + L1PB1 LINE L1 17 200 -6663 12990 200 46 25 chr3 28110770 28114037 -199410541 + L1PB1 LINE L1 636 3832 -3035 2197 103 0 7 chr3 28114037 28114338 -199410240 + AluSx SINE Alu 1 299 -13 12990 200 46 25 chr3 28114338 28114829 -199409749 + L1PB1 LINE L1 3832 4311 -2556 7037 56 26 0 chr3 28114829 28115703 -199408875 - MER11D LTR ERVK 0 897 1 12990 200 46 25 chr3 28115703 28116108 -199408470 + L1PB1 LINE L1 4311 4706 -2161 186 103 0 0 chr3 28116108 28116137 -199408441 + (CAA)n Simple_repeat Simple_repeat 2 30 0 12990 200 46 25 chr3 28116137 28117548 -199407030 + L1PB1 LINE L1 4706 6512 -355 357 24 0 0 chr3 28117548 28117590 -199406988 + (CA)n Simple_repeat Simple_repeat 2 43 0 12990 200 46 25 chr3 28117590 28117666 -199406912 + L1PB1 LINE L1 6512 6585 -282 1181 114 11 0 chr3 28117667 28117865 -199406713 + L1PB1 LINE L1 6680 6879 0 3204 116 107 16 chr3 28117889 28118439 -199406139 - MER4A LTR ERV1 0 600 1 358 345 58 26 chr3 28118481 28118707 -199405871 + L1MEd LINE L1 512 744 -5375 290 312 0 0 chr3 28118757 28118834 -199405744 + MER58A DNA MER1_type 5 81 -26 25 65 0 0 chr3 28119228 28119274 -199405304 + AT_rich Low_complexity Low_complexity 1 46 0 202 147 73 0 chr3 28119285 28119353 -199405225 + (TA)n Simple_repeat Simple_repeat 2 74 0 2018 146 79 22 chr3 28119517 28119920 -199404658 - MSTB LTR MaLR 0 426 1 23 33 0 0 chr3 28119981 28120011 -199404567 + AT_rich Low_complexity Low_complexity 1 30 0 2115 98 3 64 chr3 28120218 28120370 -199404208 + AluSx SINE Alu 1 124 -188 2309 98 7 0 chr3 28120370 28120677 -199403901 + AluSp SINE Alu 1 309 -4 2115 98 3 64 chr3 28120677 28120850 -199403728 + AluSx SINE Alu 124 306 -6 579 45 63 9 chr3 28120942 28121053 -199403525 + (TCTA)n Simple_repeat Simple_repeat 3 119 0 321 319 69 0 chr3 28122196 28122312 -199402266 + MIR SINE MIR 19 142 -66 259 264 41 137 chr3 28122586 28122783 -199401795 + MER5B DNA MER1_type 1 178 0 195 279 0 0 chr3 28123116 28123159 -199401419 - MER5A DNA MER1_type -75 114 72 542 296 73 24 chr3 28123345 28123551 -199401027 - MIR SINE MIR -1 261 46 396 0 0 0 chr3 28125999 28126043 -199398535 + (CA)n Simple_repeat Simple_repeat 2 45 0 1949 186 36 64 chr3 28126240 28126740 -199397838 - MER63 DNA MER1_type -3 1057 572 1480 265 79 35 chr3 28127314 28127748 -199396830 - L2 LINE L2 -1234 2080 1616 1982 148 9 29 chr3 28127748 28128092 -199396486 + MER1B DNA MER1_type 1 337 0 1480 265 79 35 chr3 28128092 28128201 -199396377 - L2 LINE L2 -1698 1616 1513 420 55 0 0 chr3 28128646 28128701 -199395877 + (CA)n Simple_repeat Simple_repeat 1 55 0 579 221 5 113 chr3 28129623 28129818 -199394760 + MER20 DNA MER1_type 45 218 -1 227 146 0 24 chr3 28130349 28130390 -199394188 - MER66A LTR ERV1 0 478 439 451 103 0 0 chr3 28130390 28130462 -199394116 - L1PA16 LINE L1 -221 5942 5871 683 256 29 24 chr3 28130575 28130782 -199393796 + L1MC5 LINE L1 7706 7913 -48 892 290 139 7 chr3 28131588 28132012 -199392566 - L1ME3A LINE L1 -258 5912 5433 424 260 26 62 chr3 28132028 28132220 -199392358 - L1ME1 LINE L1 -4 6162 5978 295 175 0 32 chr3 28132222 28132285 -199392293 - L1MEc LINE L1 -6286 110 50 257 233 0 16 chr3 28132287 28132365 -199392213 - L1ME3A LINE L1 -720 5450 5374 414 328 92 0 chr3 28133388 28133583 -199390995 - MIR SINE MIR -3 259 47 1055 214 65 39 chr3 28134892 28134982 -199389596 - L1MD3 LINE L1 0 7995 7909 2129 176 8 5 chr3 28134982 28135368 -199389210 + MLT1B LTR MaLR 1 387 -3 1055 214 65 39 chr3 28135368 28135586 -199388992 - L1MD3 LINE L1 -86 7909 7679 198 362 76 9 chr3 28136579 28136684 -199387894 + MIR3 SINE MIR 12 123 -85 2461 77 0 0 chr3 28136853 28137164 -199387414 + AluY SINE Alu 1 311 0 336 381 26 11 chr3 28137559 28137748 -199386830 + L2 LINE L2 1268 1459 -1855 180 0 0 0 chr3 28138038 28138058 -199386520 + (T)n Simple_repeat Simple_repeat 1 20 0 834 300 10 35 chr3 28138284 28138687 -199385891 - L1ME3A LINE L1 -1978 4168 3776 1393 302 30 21 chr3 28139613 28140269 -199384309 - L1MEc LINE L1 -1978 4237 3576 2029 267 17 37 chr3 28140341 28141170 -199383408 - L1MEc LINE L1 -3057 3158 2347 9468 174 4 15 chr3 28141171 28143737 -199380841 - L1PA14 LINE L1 -3 7596 5000 6260 239 19 21 chr3 28143737 28145503 -199379075 - L1PA14 LINE L1 -3132 4452 2690 1290 156 34 0 chr3 28145513 28145718 -199378860 - L1PA14 LINE L1 -7366 215 4 722 247 58 77 chr3 28145720 28145771 -199378807 - L1MEc LINE L1 -3861 2358 2308 2156 80 0 45 chr3 28145771 28146082 -199378496 + AluSc SINE Alu 2 298 -11 722 247 58 77 chr3 28146082 28146586 -199377992 - L1MEc LINE L1 -3911 2308 1847 540 239 84 0 chr3 28146583 28146738 -199377840 + L1MEc LINE L1 1616 1783 -4613 * 2734 162 29 4 chr3 28146770 28147288 -199377290 + L1MA5 LINE L1 5768 6298 -2 2465 289 67 53 chr3 28147311 28148502 -199376076 - L1MEc LINE L1 -4581 1815 642 2036 78 0 65 chr3 28148502 28148810 -199375768 - AluSc SINE Alu -21 288 1 2465 289 67 53 chr3 28148810 28149016 -199375562 - L1MEc LINE L1 -5754 642 440 225 0 0 0 chr3 28149016 28149041 -199375537 + (TC)n Simple_repeat Simple_repeat 1 25 0 2465 289 67 53 chr3 28149041 28149326 -199375252 - L1MEc LINE L1 -5956 440 108 7023 117 39 80 chr3 28149948 28151303 -199373275 + HSMAR2 DNA Mariner 2 1301 -1 1480 178 12 27 chr3 28151439 28151698 -199372880 + AluJb SINE Alu 1 255 -57 377 181 142 16 chr3 28153346 28153435 -199371143 + L1MD3 LINE L1 7853 7964 -31 1896 169 39 23 chr3 28153435 28153819 -199370759 - MLT1B LTR MaLR 0 390 1 377 181 142 16 chr3 28153819 28153856 -199370722 + L1MD3 LINE L1 7964 7995 0 350 329 93 29 chr3 28154525 28154771 -199369807 - MIR SINE MIR 0 262 1 582 162 0 10 chr3 28154919 28155018 -199369560 + MER4A LTR ERV1 1 98 -566 1723 137 161 75 chr3 28155018 28155390 -199369188 + MER4A LTR ERV1 261 664 0 2660 120 50 51 chr3 28155393 28156081 -199368497 + MER4A-int LTR ERV1 1 832 -5766 11061 103 38 18 chr3 28156097 28156794 -199367784 + MER4A-int LTR ERV1 4810 5492 -1106 2093 115 3 0 chr3 28156794 28157089 -199367489 + AluSc SINE Alu 1 296 -13 11061 103 38 18 chr3 28157089 28158142 -199366436 + MER4A-int LTR ERV1 5492 6595 -3 563 146 10 10 chr3 28158149 28158245 -199366333 + MER4A LTR ERV1 3 98 -566 1536 140 3 83 chr3 28158245 28158608 -199365970 + MER4A LTR ERV1 261 664 0 3957 129 12 70 chr3 28158665 28159408 -199365170 - L1PB4 LINE L1 -1 6155 5456 2414 118 75 19 chr3 28159408 28159832 -199364746 + MER4-int LTR ERV1 5922 6369 -229 4343 237 26 51 chr3 28159832 28161401 -199363177 - L1PB4 LINE L1 -743 5403 3919 1080 261 6 15 chr3 28161417 28161796 -199362782 - L1M2 LINE L1 -3946 2903 2553 9646 223 12 14 chr3 28162289 28165481 -199359097 - L1PA15 LINE L1 0 6165 2947 514 225 7 94 chr3 28166028 28166166 -199358412 - MLT1E1 LTR MaLR -528 126 1 31 44 0 0 chr3 28166257 28166302 -199358276 + AT_rich Low_complexity Low_complexity 1 45 0 2301 130 25 0 chr3 28167226 28167581 -199356997 - THE1B LTR MaLR 0 364 1 13779 157 11 21 chr3 28167672 28168444 -199356134 + Tigger1 DNA MER2_type 3 781 -1637 204 67 0 0 chr3 28168444 28168474 -199356104 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 13779 157 11 21 chr3 28168474 28170134 -199354444 + Tigger1 DNA MER2_type 781 2413 -5 22 70 0 0 chr3 28170199 28170242 -199354336 + AT_rich Low_complexity Low_complexity 1 43 0 201 39 0 0 chr3 28171027 28171053 -199353525 + (CA)n Simple_repeat Simple_repeat 1 26 0 2294 187 37 0 chr3 28171095 28171502 -199353076 - MSTA LTR MaLR 0 428 7 26 0 0 0 chr3 28172194 28172220 -199352358 + AT_rich Low_complexity Low_complexity 1 26 0 362 313 205 40 chr3 28173002 28173229 -199351349 - L1ME3 LINE L1 -278 5884 5696 2218 216 8 31 chr3 28173229 28173743 -199350835 - MLT1D LTR MaLR -3 502 1 362 313 205 40 chr3 28173743 28173866 -199350712 - L1ME3 LINE L1 -466 5696 5476 747 240 57 47 chr3 28173911 28174291 -199350287 - L1MC4 LINE L1 -5 8037 7604 13588 148 19 19 chr3 28174392 28176765 -199347813 - Tigger1 DNA MER2_type -46 2372 1 324 212 61 0 chr3 28176767 28176866 -199347712 - L1MC4a LINE L1 -567 7241 7137 571 248 20 13 chr3 28176909 28177058 -199347520 - L1MC4 LINE L1 -1031 7011 6862 22 56 0 0 chr3 28177517 28177553 -199347025 + AT_rich Low_complexity Low_complexity 1 36 0 1278 213 4 12 chr3 28177740 28177994 -199346584 - MLT1D LTR MaLR -2 503 252 521 222 6 80 chr3 28178036 28178198 -199346380 - MLT1D LTR MaLR -355 150 1 5208 193 25 3 chr3 28178481 28180328 -199344250 - L1PA16 LINE L1 -10 6156 4269 2114 81 0 18 chr3 28180738 28181022 -199343556 + AluY SINE Alu 18 296 -15 181 336 21 86 chr3 28181394 28181439 -199343139 + L2 LINE L2 3183 3229 -84 2600 49 0 0 chr3 28181439 28181743 -199342835 - AluY SINE Alu -7 304 1 181 336 21 86 chr3 28181743 28181837 -199342741 + L2 LINE L2 3229 3313 0 667 293 43 116 chr3 28182565 28182892 -199341686 + LTR16C LTR ERVL 51 339 -152 2058 134 30 33 chr3 28182892 28183257 -199341321 - THE1B LTR MaLR 0 364 1 667 293 43 116 chr3 28183257 28183369 -199341209 + LTR16C LTR ERVL 339 458 -33 34 0 0 0 chr3 28183430 28183464 -199341114 + AT_rich Low_complexity Low_complexity 1 34 0 841 195 11 22 chr3 28183645 28183864 -199340714 + L1MA4 LINE L1 1 376 -4952 1479 140 171 27 chr3 28183864 28184192 -199340386 - THE1C LTR MaLR 0 375 1 841 195 11 22 chr3 28184192 28184237 -199340341 + L1MA4 LINE L1 376 420 -4908 9716 194 38 20 chr3 28184244 28187250 -199337328 + L1MA4 LINE L1 3419 6475 -7 2314 230 106 41 chr3 28187536 28188600 -199335978 + L1MC4a LINE L1 6211 6359 0 243 0 0 0 chr3 28189678 28189705 -199334873 + (CA)n Simple_repeat Simple_repeat 2 28 0 24 0 0 0 chr3 28190298 28190322 -199334256 + AT_rich Low_complexity Low_complexity 1 24 0 298 315 35 21 chr3 28191054 28191219 -199333359 + MIR SINE MIR 37 205 -57 385 258 137 8 chr3 28191489 28191613 -199332965 - LTR47A LTR ERVL -52 400 261 531 189 0 54 chr3 28191867 28191978 -199332600 - PABL_B-int LTR ERV1 -683 6075 5971 688 360 30 7 chr3 28192180 28192603 -199331975 - PABL_B-int LTR ERV1 -452 6670 6256 302 377 7 0 chr3 28192970 28193108 -199331470 - PABL_B-int LTR ERV1 -1353 5769 5631 297 339 34 43 chr3 28193774 28194101 -199330477 - HERVL18 LTR ERVL -1260 4083 3760 385 342 80 49 chr3 28194380 28195491 -199329087 - HERVL18 LTR ERVL -2431 3616 2314 1312 129 0 80 chr3 28195585 28195810 -199328768 - AluSx SINE Alu -105 207 1 404 350 45 45 chr3 28195873 28196532 -199328046 - HERVL18 LTR ERVL -3360 2105 1483 941 269 17 7 chr3 28196675 28196965 -199327613 - L1PA15-16 LINE L1 -4184 2665 2373 2638 92 95 5 chr3 28196965 28197376 -199327202 - LTR7 LTR ERV1 -2 448 1 2199 115 62 13 chr3 28197376 28197750 -199326828 - HERVH LTR ERV1 0 7713 7322 1406 116 23 0 chr3 28197748 28197963 -199326615 - HERVH LTR ERV1 -1894 5819 5600 * 4303 149 0 1 chr3 28197964 28198627 -199325951 - HERVH LTR ERV1 -2564 5149 4488 3229 123 4 6 chr3 28198629 28199132 -199325446 - HERVH LTR ERV1 -3720 3993 3492 798 159 41 0 chr3 28199122 28199267 -199325311 - HERVH LTR ERV1 -4423 3290 3140 * 19959 100 17 15 chr3 28199261 28202242 -199322336 - HERVH LTR ERV1 -4726 2987 1 2636 87 95 7 chr3 28202244 28202656 -199321922 - LTR7 LTR ERV1 -2 448 1 1781 243 42 136 chr3 28202663 28203875 -199320703 - L1PA15-16 LINE L1 -4476 2373 1276 996 340 83 29 chr3 28204525 28205225 -199319353 - L1M2b LINE L1 -6471 738 1 334 305 123 44 chr3 28206187 28206330 -199318248 + MIR3 SINE MIR 14 178 -84 2555 72 125 5 chr3 28206330 28206730 -199317848 - LTR7 LTR ERV1 -2 448 1 334 305 123 44 chr3 28206730 28206795 -199317783 + MIR3 SINE MIR 178 236 -26 22 56 0 0 chr3 28206801 28206837 -199317741 + AT_rich Low_complexity Low_complexity 1 36 0 775 260 79 63 chr3 28207168 28207918 -199316660 - L1M4 LINE L1 -2696 3450 2689 22 56 0 0 chr3 28207953 28207989 -199316589 + AT_rich Low_complexity Low_complexity 1 36 0 1919 289 84 15 chr3 28208208 28209322 -199315256 - L1ME3A LINE L1 -44 6126 4931 21 0 0 0 chr3 28210575 28210596 -199313982 + AT_rich Low_complexity Low_complexity 1 21 0 306 341 60 51 chr3 28210597 28210949 -199313629 + HAL1b LINE L1 276 630 -718 34 84 0 0 chr3 28211575 28211658 -199312920 + AT_rich Low_complexity Low_complexity 1 83 0 30 27 0 0 chr3 28211774 28211811 -199312767 + AT_rich Low_complexity Low_complexity 1 37 0 950 161 0 46 chr3 28211994 28212168 -199312410 - FRAM SINE Alu -13 163 1 759 229 62 81 chr3 28212226 28212659 -199311919 + L1MC5 LINE L1 7482 7906 -55 5575 71 20 7 chr3 28214313 28215069 -199309509 - MER4E LTR ERV1 0 766 1 198 0 0 0 chr3 28215349 28215371 -199309207 + (A)n Simple_repeat Simple_repeat 1 22 0 7386 146 67 14 chr3 28215932 28217272 -199307306 - MER4E-int LTR ERV1 -113 6645 5235 6597 37 0 0 chr3 28217273 28218055 -199306523 - L1PA5 LINE L1 -20 6134 5353 1718 133 65 19 chr3 28218062 28218669 -199305909 - MER4E-int LTR ERV1 -1532 5226 4448 * 7707 141 76 27 chr3 28218666 28218782 -199305796 - MER4E-int LTR ERV1 -2672 4086 3977 4949 84 5 1 chr3 28218782 28219440 -199305138 - PABL_A LTR ERV1 0 660 1 7707 141 76 27 chr3 28219440 28222009 -199302569 - MER4E-int LTR ERV1 -2781 3977 1444 6427 110 90 53 chr3 28222006 28223148 -199301430 - MER4E-int LTR ERV1 -5588 1170 1 * 5039 85 65 3 chr3 28223148 28223869 -199300709 - MER4E LTR ERV1 0 766 1 321 319 43 17 chr3 28224775 28224891 -199299687 + L3 LINE CR1 1332 1450 -127 351 325 60 15 chr3 28224941 28225091 -199299487 + MIR SINE MIR 6 160 -48 192 135 0 0 chr3 28225273 28225310 -199299268 + (TTG)n Simple_repeat Simple_repeat 3 39 0 203 186 23 23 chr3 28225316 28225359 -199299219 + L3 LINE CR1 1530 1572 -5 1134 182 81 103 chr3 28225868 28226050 -199298528 - LTR37A LTR ERV1 0 426 241 192 97 0 0 chr3 28226050 28226081 -199298497 + (TG)n Simple_repeat Simple_repeat 2 32 0 1134 182 81 103 chr3 28226081 28226294 -199298284 - LTR37A LTR ERV1 -185 241 40 643 251 136 15 chr3 28226295 28226494 -199298084 + MER58A DNA MER1_type 2 224 0 324 344 128 6 chr3 28226535 28226715 -199297863 + MIR SINE MIR 6 207 -55 649 0 123 0 chr3 28227068 28227149 -199297429 - L1PA4 LINE L1 -8 6147 6057 186 333 10 73 chr3 28227162 28227258 -199297320 + MIR3 SINE MIR 108 197 -11 471 286 21 42 chr3 28227540 28227729 -199296849 - MIR SINE MIR -56 206 22 2206 321 128 21 chr3 28228068 28229622 -199294956 - L2 LINE L2 0 3313 1593 249 333 73 34 chr3 28229623 28229800 -199294778 - L2 LINE L2 -2335 979 796 429 280 40 23 chr3 28230036 28230290 -199294288 - L2 LINE L2 -1792 1522 1188 301 291 89 38 chr3 28230591 28230749 -199293829 - L1ME4a LINE L1 -21 6100 5935 613 159 0 37 chr3 28231043 28231150 -199293428 - FLAM_C SINE Alu -12 131 29 226 241 0 0 chr3 28231376 28231434 -199293144 + (TA)n Simple_repeat Simple_repeat 1 58 0 34 0 0 0 chr3 28231680 28231714 -199292864 + AT_rich Low_complexity Low_complexity 1 34 0 273 376 141 12 chr3 28231901 28232319 -199292259 - L2 LINE L2 -353 2961 2490 300 230 81 0 chr3 28232375 28232462 -199292116 + L1M4 LINE L1 2254 2347 -3799 22 56 0 0 chr3 28232571 28232607 -199291971 + AT_rich Low_complexity Low_complexity 1 36 0 1816 159 30 24 chr3 28232633 28232967 -199291611 - MER1B DNA MER1_type 0 337 2 473 199 55 165 chr3 28233484 28233545 -199291033 - LTR37A LTR ERV1 0 426 360 2242 105 3 0 chr3 28233545 28233851 -199290727 + AluSx SINE Alu 1 307 -5 473 199 55 165 chr3 28233851 28234171 -199290407 - LTR37A LTR ERV1 -66 360 87 195 42 0 0 chr3 28234174 28234198 -199290380 + (A)n Simple_repeat Simple_repeat 1 24 0 2058 195 37 24 chr3 28234761 28235222 -199289356 - L1MB8 LINE L1 -122 6056 5590 241 298 61 11 chr3 28235249 28235435 -199289143 + L1M4 LINE L1 5150 5349 -797 2313 101 25 189 chr3 28236034 28236606 -199287972 - LTR12 LTR ERV1 -232 482 5 612 156 23 8 chr3 28237298 28237426 -199287152 - L1MB8 LINE L1 0 6178 6049 3931 161 68 30 chr3 28237428 28238369 -199286209 + MER11C LTR ERVK 1 1071 0 1836 159 30 0 chr3 28238418 28238714 -199285864 + MLT2A2 LTR ERVL 1 305 -148 1153 95 0 12 chr3 28238758 28238927 -199285651 + MLT2A2 LTR ERVL 287 453 0 840 217 88 0 chr3 28238935 28239152 -199285426 - L1MB8 LINE L1 -174 6004 5769 24 100 0 0 chr3 28239173 28239253 -199285325 + AT_rich Low_complexity Low_complexity 1 80 0 14211 185 26 13 chr3 28239600 28239965 -199284613 - L1PB1 LINE L1 0 6867 6508 288 0 0 0 chr3 28239965 28239997 -199284581 + (TG)n Simple_repeat Simple_repeat 2 33 0 14211 185 26 13 chr3 28239997 28245629 -199278949 - L1PB1 LINE L1 -359 6508 636 1127 160 0 0 chr3 28245631 28245831 -199278747 - L1PB1 LINE L1 -6663 200 1 382 248 0 45 chr3 28246780 28246913 -199277665 + A-rich Low_complexity Low_complexity 4 130 0 188 451 0 0 chr3 28248119 28248221 -199276357 + MIR SINE MIR 46 147 -115 239 345 0 0 chr3 28248392 28248476 -199276102 + Charlie8 DNA MER1_type 117 200 -2217 286 318 36 9 chr3 28248690 28248800 -199275778 - LTR16A LTR ERVL -230 220 108 22 56 0 0 chr3 28250446 28250482 -199274096 + AT_rich Low_complexity Low_complexity 1 36 0 628 93 37 19 chr3 28251191 28251298 -199273280 + L1MC3 LINE L1 7667 7775 -10 534 329 58 8 chr3 28251302 28251545 -199273033 + L2 LINE L2 1782 2036 -1278 1370 267 108 109 chr3 28252067 28252527 -199272051 + L2 LINE L2 2141 2600 -713 366 289 11 0 chr3 28252527 28252617 -199271961 - MER81 DNA DNA -9 105 15 1370 267 108 109 chr3 28252617 28253022 -199271556 + L2 LINE L2 2600 3085 -228 222 338 25 38 chr3 28253033 28253113 -199271465 + L2 LINE L2 3194 3272 0 1105 209 50 8 chr3 28253193 28253432 -199271146 + MLT1A1 LTR MaLR 117 365 0 327 49 0 0 chr3 28253436 28253477 -199271101 + (TG)n Simple_repeat Simple_repeat 2 42 0 334 214 0 0 chr3 28253581 28253637 -199270941 + MLT1A1 LTR MaLR 310 365 0 210 143 0 0 chr3 28253655 28253690 -199270888 + (TG)n Simple_repeat Simple_repeat 2 36 0 289 230 43 22 chr3 28253723 28253740 -199270838 + (TA)n Simple_repeat Simple_repeat 1 16 -126 1613 181 57 18 chr3 28253740 28254071 -199270507 - MER7A DNA MER2_type 0 346 5 289 230 43 22 chr3 28254071 28254192 -199270386 + (TA)n Simple_repeat Simple_repeat 16 142 0 260 327 132 59 chr3 28254196 28254774 -199269804 + L2 LINE L2 2246 2865 -449 2158 151 32 17 chr3 28254791 28255202 -199269376 - MER61C LTR ERV1 -4 430 14 497 333 71 87 chr3 28255242 28255608 -199268970 + L2 LINE L2 2896 3257 -15 333 0 0 0 chr3 28255608 28255645 -199268933 + (TGGA)n Simple_repeat Simple_repeat 1 37 0 497 333 71 87 chr3 28255645 28255656 -199268922 + L2 LINE L2 3257 3267 -5 551 329 14 19 chr3 28256616 28256826 -199267752 - MLT1J LTR MaLR -302 209 1 6899 199 91 10 chr3 28257736 28259569 -199265009 - Charlie5 DNA MER1_type 0 2624 644 1070 173 54 15 chr3 28259890 28260150 -199264428 - L1MA8 LINE L1 -3 6288 6019 4921 166 83 77 chr3 28260150 28260744 -199263834 - L1MA8 LINE L1 -477 5814 5225 3051 188 5 2 chr3 28260744 28261319 -199263259 - L1PA16 LINE L1 -9 6157 5581 4921 166 83 77 chr3 28261319 28261570 -199263008 - L1MA8 LINE L1 -1066 5225 4977 2025 103 4 0 chr3 28261570 28261842 -199262736 - AluSx SINE Alu -39 273 1 4921 166 83 77 chr3 28261842 28262366 -199262212 - L1MA8 LINE L1 -1314 4977 4433 2163 88 0 7 chr3 28262366 28262684 -199261894 - AluY SINE Alu 0 316 1 4921 166 83 77 chr3 28262684 28263178 -199261400 - L1MA8 LINE L1 -1858 4433 3943 2293 194 30 10 chr3 28263196 28263700 -199260878 - Charlie5 DNA MER1_type -2098 514 1 608 245 104 61 chr3 28264231 28264770 -199259808 - L1MC5 LINE L1 -70 7891 7330 327 289 128 22 chr3 28264814 28264994 -199259584 - HAL1 LINE L1 -2296 211 13 297 330 26 0 chr3 28265351 28265466 -199259112 + L2 LINE L2 3196 3313 0 29 0 0 0 chr3 28267308 28267337 -199257241 + AT_rich Low_complexity Low_complexity 1 29 0 763 209 32 51 chr3 28268703 28268760 -199255818 - L1M4 LINE L1 -3010 3634 3577 2025 130 7 0 chr3 28268760 28269061 -199255517 - AluSq SINE Alu -10 303 1 763 209 32 51 chr3 28269061 28269256 -199255322 - L1M4 LINE L1 -3067 3577 3387 964 251 7 39 chr3 28269374 28269657 -199254921 - L1M4 LINE L1 -6268 274 1 4042 118 21 6 chr3 28269658 28270284 -199254294 - MER41B LTR ERV1 0 635 1 411 276 61 33 chr3 28270386 28270567 -199254011 - MIR SINE MIR -14 248 63 276 375 19 0 chr3 28270623 28270727 -199253851 + L3 LINE CR1 1445 1550 -27 * 296 307 98 7 chr3 28270717 28270870 -199253708 - MIR SINE MIR -10 252 86 202 320 25 66 chr3 28270909 28271031 -199253547 - L3 LINE CR1 -211 1366 1250 563 293 99 9 chr3 28271066 28271298 -199253280 - MIR SINE MIR -1 261 9 491 355 35 27 chr3 28271979 28272235 -199252343 - MIR SINE MIR 0 262 5 5170 264 31 20 chr3 28272640 28275726 -199248852 - L1PA13 LINE L1 -3231 3566 2 1324 196 38 66 chr3 28276334 28276745 -199247833 + MER67C LTR ERV1 1 403 -243 358 204 155 63 chr3 28276760 28276902 -199247676 + MER67D LTR ERV1 360 514 0 300 322 98 58 chr3 28276993 28277403 -199247175 + L1ME LINE L1 5360 5785 -336 22 94 0 0 chr3 28278445 28278509 -199246069 + AT_rich Low_complexity Low_complexity 1 64 0 397 382 41 0 chr3 28278557 28278777 -199245801 - MIR SINE MIR -3 259 31 2724 10 0 16 chr3 28278878 28279192 -199245386 - AluYb8 SINE Alu -9 309 1 14478 180 25 10 chr3 28279444 28284127 -199240451 - L1MA2 LINE L1 0 7723 2971 39 0 0 0 chr3 28284232 28284271 -199240307 + AT_rich Low_complexity Low_complexity 1 39 0 193 290 65 0 chr3 28285107 28285169 -199239409 - MIR SINE MIR -116 146 81 994 204 95 0 chr3 28285475 28285739 -199238839 - MER33 DNA MER1_type -4 320 32 509 324 89 22 chr3 28286294 28286609 -199237969 - MLT1J1 LTR MaLR -110 336 1 1156 152 22 0 chr3 28289276 28289460 -199235118 + MER6B DNA MER2_type 4 191 -19 1113 177 58 8 chr3 28290096 28290339 -199234239 + L1PA15 LINE L1 2392 2646 -3500 5722 122 24 0 chr3 28290339 28291586 -199232992 + L1PA15 LINE L1 4897 6165 0 363 290 148 23 chr3 28291713 28291889 -199232689 - L2 LINE L2 -850 2464 2267 21 0 0 0 chr3 28292400 28292421 -199232157 + AT_rich Low_complexity Low_complexity 1 21 0 717 293 112 48 chr3 28293093 28293623 -199230955 + MLT1G1 LTR MaLR 1 595 0 21 36 0 0 chr3 28293989 28294017 -199230561 + AT_rich Low_complexity Low_complexity 1 28 0 459 298 0 8 chr3 28296244 28296368 -199228210 + MLT1E LTR MaLR 1 123 -470 1144 139 5 45 chr3 28296443 28296644 -199227934 - AluSx SINE Alu -119 193 1 980 35 28 7 chr3 28296698 28296839 -199227739 + (TTTC)n Simple_repeat Simple_repeat 2 145 0 189 380 83 0 chr3 28297429 28297537 -199227041 + L2 LINE L2 3151 3267 -5 233 343 0 0 chr3 28298562 28298632 -199225946 - MLT1J LTR MaLR -332 179 110 417 275 119 50 chr3 28299239 28299422 -199225156 + MIR SINE MIR 21 223 -39 729 195 97 31 chr3 28299422 28299617 -199224961 - MER3 DNA MER1_type 0 209 2 417 275 119 50 chr3 28299617 28299651 -199224927 + MIR SINE MIR 223 253 -9 292 306 57 16 chr3 28299806 28299930 -199224648 + L2 LINE L2 3185 3313 0 22 0 0 0 chr3 28300180 28300202 -199224376 + AT_rich Low_complexity Low_complexity 1 22 0 281 265 0 59 chr3 28300557 28300625 -199223953 - MLT1J2 LTR MaLR 0 450 387 209 180 20 0 chr3 28302544 28302594 -199221984 + (TG)n Simple_repeat Simple_repeat 2 52 0 1121 300 109 3 chr3 28303420 28303797 -199220781 - LTR16A LTR ERVL 0 450 34 356 250 29 0 chr3 28303920 28304024 -199220554 + L1ME3A LINE L1 5842 5948 -222 252 0 0 0 chr3 28304069 28304097 -199220481 + (CA)n Simple_repeat Simple_repeat 1 28 0 2058 115 7 3 chr3 28304291 28304595 -199219983 + AluSx SINE Alu 1 305 -7 245 339 103 0 chr3 28304920 28305085 -199219493 - MIR SINE MIR -1 261 80 15593 177 43 12 chr3 28305827 28308735 -199215843 - L1M1 LINE L1 -4553 3012 15 1035 72 7 0 chr3 28309886 28310024 -199214554 + L1PA10 LINE L1 6021 6159 -9 246 156 0 0 chr3 28310155 28310200 -199214378 + (TCCA)n Simple_repeat Simple_repeat 1 45 0 375 212 40 30 chr3 28311534 28311633 -199212945 - MIR SINE MIR -73 189 90 242 259 0 24 chr3 28312613 28312698 -199211880 - L1MC4 LINE L1 -1346 6696 6614 232 208 14 42 chr3 28312654 28312726 -199211852 + L1MCa LINE L1 1995 2064 -4362 * 264 212 0 0 chr3 28312726 28312792 -199211786 + (TA)n Simple_repeat Simple_repeat 1 66 0 291 191 0 96 chr3 28312796 28312890 -199211688 + L1MC4 LINE L1 6619 6703 -1339 1055 231 46 10 chr3 28312922 28313225 -199211353 - L1ME2 LINE L1 -143 6021 5708 314 111 0 0 chr3 28313640 28313694 -199210884 - L1MA7 LINE L1 -1 6290 6237 1949 92 5 0 chr3 28313699 28314092 -199210486 - L1PA13 LINE L1 -6 6157 5679 644 103 32 48 chr3 28314089 28314129 -199210449 - L1PA13 LINE L1 -925 5221 5182 * 180 0 0 0 chr3 28314129 28314149 -199210429 + (TTG)n Simple_repeat Simple_repeat 2 21 0 644 103 32 48 chr3 28314149 28314234 -199210344 - L1PA13 LINE L1 -964 5182 5098 333 0 0 0 chr3 28314492 28314529 -199210049 + (CA)n Simple_repeat Simple_repeat 1 37 0 233 275 116 43 chr3 28314900 28315038 -199209540 - MER5A DNA MER1_type -6 183 36 211 313 86 47 chr3 28314925 28315053 -199209525 + MER5A DNA MER1_type 46 178 -11 * 442 271 144 6 chr3 28315056 28315214 -199209364 + MER5A DNA MER1_type 6 188 -1 27212 128 13 76 chr3 28315254 28320590 -199203988 + L1P LINE L1 2 4997 -1149 301 93 0 0 chr3 28320590 28320633 -199203945 + Charlie5 DNA MER1_type 2515 2557 -55 1817 181 63 11 chr3 28320634 28320998 -199203580 + MSTD LTR MaLR 1 383 -13 3624 21 0 0 chr3 28320998 28321434 -199203144 - L1P LINE L1 -784 5362 4927 3060 54 0 0 chr3 28321436 28321822 -199202756 + L1PA5 LINE L1 5769 6154 0 23 0 0 0 chr3 28321822 28321845 -199202733 + AT_rich Low_complexity Low_complexity 1 23 0 398 93 0 0 chr3 28321846 28321900 -199202678 + MSTD LTR MaLR 404 457 0 23 0 0 0 chr3 28322418 28322441 -199202137 + AT_rich Low_complexity Low_complexity 1 23 0 1561 282 83 18 chr3 28322449 28323211 -199201367 - L1M4 LINE L1 -1252 4894 4084 868 237 0 0 chr3 28323206 28323362 -199201216 - L1MDa LINE L1 -6365 175 20 * 184 278 103 62 chr3 28324115 28324212 -199200366 + MIR SINE MIR 118 218 -44 275 318 135 14 chr3 28324508 28324656 -199199922 - L2 LINE L2 -1 3312 3147 246 299 0 28 chr3 28525466 28525573 -198999005 - MLT1E LTR MaLR -489 104 1 315 211 25 111 chr3 28525574 28525773 -198998805 - L1MC/D LINE L1 -2371 5437 5256 2469 77 3 0 chr3 28525831 28526141 -198998437 - AluY SINE Alu 0 311 1 312 27 0 0 chr3 28526180 28526217 -198998361 + (CA)n Simple_repeat Simple_repeat 2 38 0 2511 231 39 13 chr3 28526230 28526284 -198998294 + L1MCa LINE L1 1996 2047 -4379 2018 155 24 3 chr3 28526284 28526619 -198997959 + MER7A DNA MER2_type 4 343 -3 2511 231 39 13 chr3 28526619 28527824 -198996754 + L1MCa LINE L1 2047 3289 -3137 3102 184 10 0 chr3 28527839 28528354 -198996224 + Tigger7 DNA MER2_type 2 521 -212 390 240 0 42 chr3 28528353 28528364 -198996214 + Tigger7 DNA MER2_type 2396 2406 -81 * 1159 170 49 0 chr3 28528364 28528588 -198995990 - MER46A DNA MER2_type 0 236 2 390 240 0 42 chr3 28528588 28528672 -198995906 + Tigger7 DNA MER2_type 2406 2487 0 7651 83 9 10 chr3 28528672 28530526 -198994052 + L1PA7 LINE L1 4288 6154 0 2719 249 43 9 chr3 28530537 28531350 -198993228 + L1MCa LINE L1 3308 4148 -2278 23 54 0 0 chr3 28532405 28532442 -198992136 + AT_rich Low_complexity Low_complexity 1 37 0 511 189 180 0 chr3 28533829 28533940 -198990638 - FLAM_A SINE Alu -2 131 1 283 326 0 76 chr3 28534974 28535106 -198989472 - MER5A DNA MER1_type -24 165 44 2001 178 6 8 chr3 28537939 28538305 -198986273 - MLT1A1 LTR MaLR 0 365 1 337 303 34 109 chr3 28539133 28539308 -198985270 + MIR3 SINE MIR 43 204 -4 359 229 181 9 chr3 28540081 28540186 -198984392 - L2 LINE L2 0 3313 3191 679 229 0 0 chr3 28540781 28540899 -198983679 - FLAM_A SINE Alu -15 118 1 276 293 75 75 chr3 28540965 28541296 -198983282 - L2 LINE L2 -842 2472 2142 29 70 0 0 chr3 28541298 28541355 -198983223 + AT_rich Low_complexity Low_complexity 1 57 0 298 332 74 11 chr3 28542135 28542325 -198982253 - L2 LINE L2 -1378 1936 1735 789 181 51 59 chr3 28542380 28542584 -198981994 + MER33 DNA MER1_type 51 254 -2331 1537 224 34 6 chr3 28542584 28542937 -198981641 - MLT1A1 LTR MaLR 0 365 3 789 181 51 59 chr3 28542937 28542986 -198981592 + MER33 DNA MER1_type 254 302 -22 190 354 13 0 chr3 28544926 28545005 -198979573 - L2 LINE L2 -665 2649 2570 517 186 150 0 chr3 28545085 28545198 -198979380 - FLAM_C SINE Alu -2 131 2 533 284 130 14 chr3 28545262 28545477 -198979101 - MIR SINE MIR -8 254 15 31 26 0 0 chr3 28545558 28545596 -198978982 + AT_rich Low_complexity Low_complexity 1 38 0 2198 103 0 0 chr3 28545596 28545935 -198978643 + AluY SINE Alu 1 339 0 2645 61 0 0 chr3 28546412 28546723 -198977855 + AluY SINE Alu 1 311 0 610 276 65 40 chr3 28546848 28547379 -198977199 - MLT1H LTR MaLR 0 595 1 276 30 0 0 chr3 28547391 28547424 -198977154 + (A)n Simple_repeat Simple_repeat 1 33 0 1980 205 143 72 chr3 28547587 28548458 -198976120 - LTR28 LTR ERV1 0 1020 3 23 54 0 0 chr3 28548465 28548502 -198976076 + AT_rich Low_complexity Low_complexity 1 37 0 378 180 288 14 chr3 28548571 28548710 -198975868 - MIR SINE MIR 0 262 86 180 158 0 0 chr3 28549364 28549402 -198975176 + GA-rich Low_complexity Low_complexity 2 39 0 22 35 0 0 chr3 28551128 28551157 -198973421 + AT_rich Low_complexity Low_complexity 1 29 0 2584 189 44 17 chr3 28551196 28551737 -198972841 - LTR38 LTR ERV1 0 556 1 21 36 0 0 chr3 28552676 28552704 -198971874 + AT_rich Low_complexity Low_complexity 1 28 0 340 288 17 0 chr3 28552951 28553069 -198971509 - MIR SINE MIR -12 250 131 232 349 48 0 chr3 28553571 28553654 -198970924 - L2 LINE L2 -2 3270 3184 584 303 150 57 chr3 28553744 28553873 -198970705 - L2 LINE L2 -645 2669 2553 2665 36 0 3 chr3 28553873 28554180 -198970398 - AluY SINE Alu -5 306 1 584 303 150 57 chr3 28554180 28554469 -198970109 - L2 LINE L2 -761 2553 2212 399 333 55 36 chr3 28556406 28556571 -198968007 + L2 LINE L2 3104 3271 -1 556 325 32 67 chr3 28556834 28557210 -198967368 + L1M4c LINE L1 414 776 -5527 2772 262 46 23 chr3 28557405 28558537 -198966041 + L1M4c LINE L1 777 1825 -4516 7091 124 26 44 chr3 28558600 28559466 -198965112 + L1PA11 LINE L1 4046 4926 -1248 2156 110 0 0 chr3 28559466 28559770 -198964808 + AluSg SINE Alu 1 304 0 7091 124 26 44 chr3 28559770 28560227 -198964351 + L1PA11 LINE L1 4926 5390 -784 2223 133 0 0 chr3 28560227 28560528 -198964050 - AluSq SINE Alu -12 301 1 1511 58 39 10 chr3 28560534 28560741 -198963837 - L1PA7 LINE L1 -1 6153 5941 7091 124 26 44 chr3 28560741 28561569 -198963009 + L1PA11 LINE L1 5395 6174 0 6486 234 41 19 chr3 28561586 28562424 -198962154 + L1M4c LINE L1 2013 2831 -3551 255 103 0 0 chr3 28562424 28562463 -198962115 + (CA)n Simple_repeat Simple_repeat 2 40 0 6486 234 41 19 chr3 28562463 28562799 -198961779 + L1M4c LINE L1 2831 3158 -3224 1376 174 4 4 chr3 28562799 28563035 -198961543 + MER46A DNA MER2_type 1 236 0 6486 234 41 19 chr3 28563035 28564095 -198960483 + L1M4c LINE L1 3158 4299 -2083 929 228 25 5 chr3 28565101 28565303 -198959275 + MER3 DNA MER1_type 4 209 0 2002 141 3 0 chr3 28565341 28565638 -198958940 - AluSx SINE Alu -14 298 1 1030 306 49 82 chr3 28565844 28566371 -198958207 - MLT2E LTR ERVL -118 510 1 7266 230 64 77 chr3 28567632 28567724 -198956854 + L1M2 LINE L1 82 174 -6674 1953 141 52 47 chr3 28567724 28568086 -198956492 - THE1B LTR MaLR 0 364 1 11114 101 20 4 chr3 28568086 28569641 -198954937 - THE1B-int LTR MaLR 0 1580 1 2322 131 5 32 chr3 28569641 28570015 -198954563 - THE1B LTR MaLR 0 364 1 7266 230 64 77 chr3 28570015 28571492 -198953086 + L1M2 LINE L1 172 1667 -5181 297 0 0 0 chr3 28571492 28571525 -198953053 + (CA)n Simple_repeat Simple_repeat 2 34 0 7266 230 64 77 chr3 28571525 28572226 -198952352 + L1M2 LINE L1 1667 2376 -4472 1803 132 57 48 chr3 28572226 28572598 -198951980 - THE1C LTR MaLR 0 375 1 7266 230 64 77 chr3 28572598 28573859 -198950719 + L1M2 LINE L1 2376 3572 -3276 321 26 0 0 chr3 28573863 28573901 -198950677 + (TG)n Simple_repeat Simple_repeat 1 38 0 209 179 48 0 chr3 28573909 28573993 -198950585 + (TA)n Simple_repeat Simple_repeat 1 88 0 1532 82 5 0 chr3 28573993 28574201 -198950377 - L1P5 LINE L1 -360 5791 5583 852 277 89 15 chr3 28574320 28574714 -198949864 + L1MC4a LINE L1 5525 5947 -1861 26 82 0 0 chr3 28574877 28574938 -198949640 + AT_rich Low_complexity Low_complexity 1 61 0 39506 33 18 2 chr3 28574996 28581028 -198943550 - L1PA2 LINE L1 0 6155 1 378 266 28 28 chr3 28581033 28581176 -198943402 - L1ME LINE L1 -377 5744 5602 586 324 72 52 chr3 28582361 28582762 -198941816 + LTR16C LTR ERVL 73 481 -10 528 288 33 84 chr3 28583618 28583892 -198940686 + MLT1J LTR MaLR 7 266 -245 448 222 40 0 chr3 28584386 28584485 -198940093 - MIR SINE MIR -61 201 99 198 359 39 31 chr3 28586135 28586263 -198938315 + MIR3 SINE MIR 31 159 -49 968 177 70 0 chr3 28586634 28586677 -198937901 + MER3 DNA MER1_type 5 60 -149 319 239 132 44 chr3 28586677 28586836 -198937742 - MER3 DNA MER1_type 0 209 37 314 280 0 32 chr3 28587526 28587619 -198936959 - L1MC4 LINE L1 -1339 6703 6614 459 63 84 21 chr3 28587623 28587766 -198936812 + (TA)n Simple_repeat Simple_repeat 1 152 0 281 303 28 84 chr3 28587999 28588057 -198936521 - MIR3 SINE MIR -40 168 108 1338 186 70 0 chr3 28588057 28588358 -198936220 + MER33 DNA MER1_type 3 324 0 281 303 28 84 chr3 28588358 28588441 -198936137 - MIR3 SINE MIR -100 108 35 865 100 0 90 chr3 28588572 28588772 -198935806 + AluSg SINE Alu 39 220 -90 216 0 0 0 chr3 28588856 28588880 -198935698 + (A)n Simple_repeat Simple_repeat 1 24 0 32 0 0 0 chr3 28588931 28588963 -198935615 + AT_rich Low_complexity Low_complexity 1 32 0 43 101 0 0 chr3 28589409 28589488 -198935090 + AT_rich Low_complexity Low_complexity 1 79 0 980 128 0 4 chr3 28590211 28590462 -198934116 + (TA)n Simple_repeat Simple_repeat 1 250 0 234 0 0 0 chr3 28590461 28590487 -198934091 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 535 299 13 28 chr3 28590490 28590574 -198934004 + L1ME LINE L1 5086 5170 -992 1611 170 3 27 chr3 28590574 28590874 -198933704 + AluJb SINE Alu 1 293 -19 535 299 13 28 chr3 28590874 28591260 -198933318 + L1ME LINE L1 5170 5550 -612 1077 152 0 34 chr3 28591545 28591723 -198932855 + FRAM SINE Alu 1 164 -12 25 0 0 0 chr3 28591953 28591978 -198932600 + AT_rich Low_complexity Low_complexity 1 25 0 600 221 52 29 chr3 28592574 28592783 -198931795 + LTR41 LTR ERVL 1 244 -551 496 196 20 131 chr3 28592970 28593169 -198931409 + LTR41 LTR ERVL 496 672 -101 336 188 21 52 chr3 28593255 28593351 -198931227 + LTR41 LTR ERVL 675 767 -6 343 306 115 6 chr3 28594863 28594966 -198929612 + MIR SINE MIR 37 164 -98 2498 170 12 0 chr3 28594966 28595389 -198929189 - MSTA LTR MaLR 0 428 1 343 306 115 6 chr3 28595389 28595442 -198929136 + MIR SINE MIR 164 210 -52 530 92 0 13 chr3 28595526 28595602 -198928976 - MADE1 DNA Mariner -5 75 1 597 248 87 34 chr3 28595840 28596046 -198928532 - L1ME3A LINE L1 -11 6159 5943 433 294 56 7 chr3 28596095 28596238 -198928340 - L2 LINE L2 -5 3308 3159 295 297 14 22 chr3 28596617 28596755 -198927823 + MER103 DNA DNA 10 146 -20 923 131 0 7 chr3 28596844 28596989 -198927589 - MER39 LTR ERV1 0 707 564 600 232 114 29 chr3 28596983 28597308 -198927270 - MER39 LTR ERV1 -272 435 1 * 724 251 94 0 chr3 28598636 28598827 -198925751 + MER63A DNA MER1_type 2 210 0 231 277 235 8 chr3 28598978 28599097 -198925481 - Charlie8 DNA MER1_type -2138 279 134 266 311 135 14 chr3 28599921 28600069 -198924509 + L2 LINE L2 3147 3312 -1 184 278 103 62 chr3 28600365 28600462 -198924116 - MIR SINE MIR -44 218 118 1507 108 33 11 chr3 28600835 28601158 -198923420 - L1P5 LINE L1 -628 5523 5196 312 293 150 15 chr3 28601628 28601761 -198922817 - MIR SINE MIR -25 237 87 427 194 5 1 chr3 28602067 28602154 -198922424 - MLT1E2 LTR MaLR 0 626 504 396 250 73 0 chr3 28602155 28602275 -198922303 - MLT1E2 LTR MaLR -125 380 228 2501 83 123 5 chr3 28602284 28602683 -198921895 + LTR7 LTR ERV1 3 448 -2 620 114 0 0 chr3 28602685 28602773 -198921805 + HERVH LTR ERV1 1 88 -7625 * 14847 91 8 22 chr3 28602766 28604977 -198919601 + HERVH LTR ERV1 817 2995 -4718 6000 101 1 2 chr3 28604956 28605811 -198918767 + HERVH LTR ERV1 3140 3993 -3720 * 4445 133 1 3 chr3 28605813 28606476 -198918102 + HERVH LTR ERV1 4488 5149 -2564 1333 123 38 0 chr3 28606477 28606689 -198917889 + HERVH LTR ERV1 5600 5819 -1894 * 2426 87 50 16 chr3 28606687 28607065 -198917513 + HERVH LTR ERV1 7322 7712 -1 10791 178 56 22 chr3 28607278 28610732 -198913846 + L1MA4A LINE L1 2648 6228 -75 2000 124 17 3 chr3 28610732 28611031 -198913547 - AluSp SINE Alu -10 303 1 10791 178 56 22 chr3 28611031 28611103 -198913475 + L1MA4A LINE L1 6228 6296 -7 456 199 74 48 chr3 28611348 28611515 -198913063 - MIR SINE MIR -46 216 45 1041 70 0 7 chr3 28611610 28611752 -198912826 - L1PA7 LINE L1 -134 6020 5880 2166 164 35 35 chr3 28613301 28613758 -198910820 + MSTB2 LTR MaLR 1 457 0 924 153 5 48 chr3 28614521 28614710 -198909868 - L1PA3 LINE L1 0 6155 5975 1059 291 43 76 chr3 28615508 28616241 -198908337 + L2 LINE L2 2541 3253 -60 376 280 10 20 chr3 28616480 28616580 -198907998 + L2 LINE L2 3215 3313 0 22 35 0 0 chr3 28616969 28616998 -198907580 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr3 28618184 28618216 -198906362 + AT_rich Low_complexity Low_complexity 1 32 0 2216 178 20 0 chr3 28618483 28618877 -198905701 - Tigger1 DNA MER2_type 0 2418 2017 * 8025 153 32 24 chr3 28618869 28620292 -198904286 - Tigger1 DNA MER2_type -976 1442 8 1356 248 56 50 chr3 28621019 28621519 -198903059 - MLT1D LTR MaLR 0 505 3 356 271 84 54 chr3 28621660 28621826 -198902752 - MIR SINE MIR -76 186 16 605 238 93 6 chr3 28621925 28622097 -198902481 - MER5A DNA MER1_type 0 189 3 704 173 30 6 chr3 28622209 28622377 -198902201 + GA-rich Low_complexity Low_complexity 1 172 0 283 239 15 30 chr3 28622443 28622510 -198902068 - MIR SINE MIR -96 112 47 231 114 0 0 chr3 28624566 28624601 -198899977 + (CAT)n Simple_repeat Simple_repeat 2 36 0 399 285 123 17 chr3 28624660 28624839 -198899739 - MIR SINE MIR -3 259 62 537 278 7 7 chr3 28624901 28625052 -198899526 + MER5B DNA MER1_type 26 176 -2 422 256 8 26 chr3 28626030 28626147 -198898431 - L2 LINE L2 0 3313 3199 27 0 0 0 chr3 28627507 28627534 -198897044 + AT_rich Low_complexity Low_complexity 1 27 0 755 262 51 65 chr3 28627863 28628199 -198896379 - MLT1I LTR MaLR -8 401 71 523 178 101 28 chr3 28628492 28628697 -198895881 - MER106B DNA MER1_type -6 1053 12 420 311 25 78 chr3 28628901 28629145 -198895433 + MIR SINE MIR 2 232 -30 563 216 159 0 chr3 28629542 28629637 -198894941 - L1 LINE L1 -2822 3324 3245 243 0 0 0 chr3 28629637 28629664 -198894914 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 563 216 159 0 chr3 28629664 28629813 -198894765 - L1 LINE L1 -2901 3245 3041 1948 81 4 4 chr3 28629817 28630064 -198894514 + AluSg SINE Alu 50 296 -14 21 0 0 0 chr3 28630100 28630121 -198894457 + AT_rich Low_complexity Low_complexity 1 21 0 180 77 0 0 chr3 28632070 28632096 -198892482 + (GA)n Simple_repeat Simple_repeat 1 26 0 2304 90 3 0 chr3 28632800 28633100 -198891478 - AluSc SINE Alu -8 301 1 394 245 57 19 chr3 28637275 28637381 -198887197 + MER91B DNA MER1_type 11 120 -70 4645 115 22 0 chr3 28637406 28638075 -198886503 - LTR12 LTR ERV1 0 688 5 2437 185 46 24 chr3 28638091 28638680 -198885898 - pTR5 LTR ERV1 -1094 1344 743 248 320 58 19 chr3 28638683 28638786 -198885792 + MER91B DNA MER1_type 83 189 -1 290 179 164 0 chr3 28639162 28639229 -198885349 - MER116 DNA Mariner -1 79 2 23 33 0 0 chr3 28639257 28639287 -198885291 + AT_rich Low_complexity Low_complexity 1 30 0 582 224 106 12 chr3 28639287 28639448 -198885130 + MER58C DNA MER1_type 40 215 0 198 0 0 0 chr3 28640454 28640476 -198884102 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 330 324 25 28 chr3 28640970 28641148 -198883430 - MER5A DNA MER1_type -3 186 1 180 380 92 5 chr3 28641221 28641405 -198883173 + L2 LINE L2 1917 2116 -1198 757 226 164 5 chr3 28641494 28641702 -198882876 + MIR SINE MIR 15 255 -7 591 337 129 30 chr3 28641713 28642674 -198881904 + L2 LINE L2 2211 3272 0 26 0 0 0 chr3 28642783 28642809 -198881769 + AT_rich Low_complexity Low_complexity 1 26 0 7128 14 0 7 chr3 28642815 28643642 -198880936 - L1PA3 LINE L1 0 6155 5335 * 11655 30 1 2 chr3 28643639 28645048 -198879530 + L1P LINE L1 3965 5371 -775 374 301 51 45 chr3 28645420 28645596 -198878982 - MIR3 SINE MIR -13 195 19 728 120 40 32 chr3 28646102 28646227 -198878351 + THE1B LTR MaLR 1 126 -238 30572 105 8 11 chr3 28646251 28651963 -198872615 - L1PA7 LINE L1 -14 6455 748 1469 136 41 21 chr3 28651964 28652207 -198872371 + THE1B LTR MaLR 117 364 0 11269 113 2 2 chr3 28652207 28653787 -198870791 + THE1B-int LTR MaLR 1 1580 0 1588 115 37 34 chr3 28653789 28654058 -198870520 + THE1B LTR MaLR 3 272 -92 182 364 17 59 chr3 28654358 28654476 -198870102 + MIR3 SINE MIR 15 127 -81 27 0 0 0 chr3 28656448 28656475 -198868103 + AT_rich Low_complexity Low_complexity 1 27 0 1792 179 0 3 chr3 28657288 28657620 -198866958 + AluJb SINE Alu 1 331 0 1295 264 32 14 chr3 28657694 28658038 -198866540 + LTR16A LTR ERVL 92 441 -9 232 342 54 18 chr3 28659342 28659453 -198865125 - L2 LINE L2 0 3272 3158 609 276 85 51 chr3 28659924 28660218 -198864360 + MLT1J1 LTR MaLR 126 429 -17 21 0 0 0 chr3 28660505 28660526 -198864052 + AT_rich Low_complexity Low_complexity 1 21 0 5821 159 37 4 chr3 28661595 28663219 -198861359 - L1MA5 LINE L1 -13 6287 4608 2229 185 33 31 chr3 28663215 28663729 -198860849 - L1MA5 LINE L1 -2327 3819 3305 * 294 154 96 0 chr3 28663729 28663781 -198860797 - AluS SINE Alu -246 57 1 21 36 0 0 chr3 28663993 28664021 -198860557 + AT_rich Low_complexity Low_complexity 1 28 0 285 334 151 30 chr3 28664401 28664901 -198859677 - L2 LINE L2 -5 3308 2672 243 315 40 27 chr3 28664905 28665054 -198859524 + L1MEd LINE L1 3 153 -5966 312 285 65 0 chr3 28665507 28665630 -198858948 + L1MEd LINE L1 702 832 -5287 1218 201 35 50 chr3 28665793 28666076 -198858502 + AluJo SINE Alu 11 289 -23 974 277 129 22 chr3 28666078 28666272 -198858306 + L1M4 LINE L1 4078 4250 -1896 2228 114 0 0 chr3 28666272 28666571 -198858007 + AluSq SINE Alu 1 299 -14 974 277 129 22 chr3 28666571 28667261 -198857317 + L1M4 LINE L1 4250 5055 -1091 613 114 0 0 chr3 28667296 28667384 -198857194 + AluY SINE Alu 3 90 -221 265 152 22 0 chr3 28667515 28667561 -198857017 + THE1A LTR MaLR 309 355 0 27 0 0 0 chr3 28668140 28668167 -198856411 + AT_rich Low_complexity Low_complexity 1 27 0 194 0 0 37 chr3 28668224 28668251 -198856327 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1809 166 0 3 chr3 28668253 28668542 -198856036 - AluSx SINE Alu -24 288 1 250 216 0 0 chr3 28670037 28670088 -198854490 + L1M4 LINE L1 3980 4030 -2116 * 3733 192 133 97 chr3 28670086 28670857 -198853721 + L1MC3 LINE L1 6310 7251 -534 313 289 0 21 chr3 28670857 28670954 -198853624 + MLT1F1 LTR MaLR 37 131 -436 3733 192 133 97 chr3 28670954 28671503 -198853075 + L1MC3 LINE L1 7251 7778 -7 1558 149 202 15 chr3 28671530 28671872 -198852706 - MSTA LTR MaLR -21 407 2 2543 229 101 11 chr3 28671877 28672690 -198851888 + L1MC4a LINE L1 6967 7808 0 209 398 16 31 chr3 28675242 28675308 -198849270 + L2 LINE L2 3147 3212 -60 2133 105 0 30 chr3 28675308 28675604 -198848974 - AluSq SINE Alu -26 287 1 209 398 16 31 chr3 28675604 28675665 -198848913 + L2 LINE L2 3212 3272 0 204 40 0 0 chr3 28675748 28675773 -198848805 + (TG)n Simple_repeat Simple_repeat 1 25 0 253 208 0 62 chr3 28675811 28675907 -198848671 + L1MC4 LINE L1 6614 6703 -1339 22 56 0 0 chr3 28675982 28676018 -198848560 + AT_rich Low_complexity Low_complexity 1 36 0 4550 211 46 8 chr3 28676634 28677598 -198846980 + L1PA15-16 LINE L1 734 1685 -5164 5610 277 63 64 chr3 28677722 28678536 -198846042 - L1M1 LINE L1 -4052 2680 1866 1791 152 24 0 chr3 28678536 28678826 -198845752 - AluSx SINE Alu -15 297 1 5610 277 63 64 chr3 28678826 28681049 -198843529 - L1M1 LINE L1 -4866 1866 17 1149 297 34 34 chr3 28681060 28681670 -198842908 - L1M3de LINE L1 -5600 1053 2 28 29 0 0 chr3 28681762 28681797 -198842781 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr3 28681863 28681887 -198842691 + AT_rich Low_complexity Low_complexity 1 24 0 492 280 91 39 chr3 28682161 28682468 -198842110 - L1ME LINE L1 -446 5675 5353 11446 26 9 0 chr3 28682704 28684102 -198840476 - L1P LINE L1 -732 5399 3989 6684 35 0 5 chr3 28684102 28684904 -198839674 + L1PA3 LINE L1 5356 6155 0 4195 198 33 8 chr3 28684955 28685884 -198838694 + L1MA9 LINE L1 4280 5232 -914 3691 176 42 29 chr3 28685889 28686487 -198838091 + L1MA9 LINE L1 5436 6050 -262 2075 128 0 7 chr3 28686487 28686784 -198837794 + AluSx SINE Alu 1 295 -17 3691 176 42 29 chr3 28686784 28687044 -198837534 + L1MA9 LINE L1 6050 6305 -7 1261 205 49 92 chr3 28687072 28687540 -198837038 - LTR7 LTR ERV1 -1 449 2 2246 85 3 17 chr3 28688889 28689183 -198835395 + AluSp SINE Alu 1 290 -23 1312 264 99 36 chr3 28689232 28689788 -198834790 + MER97a DNA MER1_type? 9 599 -295 530 244 168 5 chr3 28689881 28690090 -198834488 - LTR16A1 LTR ERVL -214 243 1 449 234 37 90 chr3 28690196 28690384 -198834194 + MLT1D LTR MaLR 48 225 -280 985 73 0 15 chr3 28690386 28690523 -198834055 - LTR7 LTR ERV1 -2 448 314 1973 138 33 25 chr3 28690805 28691166 -198833412 - THE1B LTR MaLR 0 364 1 6797 105 1 5 chr3 28691166 28692092 -198832486 - THE1B-int LTR MaLR 0 1580 659 28 48 0 0 chr3 28692500 28692542 -198832036 + AT_rich Low_complexity Low_complexity 1 42 0 885 195 6 0 chr3 28692674 28692833 -198831745 + AluJb SINE Alu 140 299 -13 318 138 86 0 chr3 28693171 28693229 -198831349 - AluSp/q SINE Alu -4 299 237 7498 218 23 10 chr3 28693337 28696065 -198828513 + L1PA15-16 LINE L1 1684 4460 -2389 18028 156 34 16 chr3 28696075 28698429 -198826149 + L1PB1 LINE L1 3 2314 -4553 5969 52 31 23 chr3 28698429 28699203 -198825375 - LTR17 LTR ERV1 0 780 1 18028 156 34 16 chr3 28699203 28701857 -198822721 + L1PB1 LINE L1 2314 4920 -1947 189 0 0 0 chr3 28701857 28701878 -198822700 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 18028 156 34 16 chr3 28701878 28702493 -198822085 + L1PB1 LINE L1 4920 5523 -1344 2480 76 0 0 chr3 28702493 28702794 -198821784 + AluSq SINE Alu 1 301 -12 18028 156 34 16 chr3 28702794 28703636 -198820942 + L1PB1 LINE L1 5523 6591 -276 321 26 0 0 chr3 28703636 28703674 -198820904 + (CA)n Simple_repeat Simple_repeat 1 38 0 18028 156 34 16 chr3 28703674 28703955 -198820623 + L1PB1 LINE L1 6591 6866 -1 2616 209 3 44 chr3 28703933 28704150 -198820428 + L1MA7 LINE L1 4444 4668 -2194 * 2156 110 7 0 chr3 28704150 28704440 -198820138 + AluSg SINE Alu 1 292 -18 2616 209 3 44 chr3 28704440 28704858 -198819720 + L1MA7 LINE L1 4668 5053 -1809 3433 157 33 42 chr3 28704858 28705592 -198818986 + L1MA7 LINE L1 6280 7006 -1 407 312 52 23 chr3 28705696 28705869 -198818709 - MIR3 SINE MIR -8 200 23 22 0 0 0 chr3 28706316 28706338 -198818240 + AT_rich Low_complexity Low_complexity 1 22 0 959 235 73 34 chr3 28706394 28706600 -198817978 - L1ME LINE L1 -468 5696 5471 387 56 0 0 chr3 28706600 28706654 -198817924 + (TG)n Simple_repeat Simple_repeat 2 55 0 959 235 73 34 chr3 28706654 28706775 -198817803 - L1ME LINE L1 -693 5471 5356 691 296 28 6 chr3 28706779 28707005 -198817573 + L1ME1 LINE L1 5945 6334 0 2341 183 46 39 chr3 28707223 28707678 -198816900 - L1MB8 LINE L1 -12 6166 5705 1279 210 52 39 chr3 28707678 28708063 -198816515 - MLT1B LTR MaLR 0 390 1 2341 183 46 39 chr3 28708063 28708193 -198816385 - L1MB8 LINE L1 -473 5705 5577 * 5491 249 63 67 chr3 28708192 28709828 -198814750 + MLT1A1-int LTR MaLR 107 1735 0 1054 237 7 106 chr3 28709829 28710234 -198814344 + MLT1A1 LTR MaLR 1 365 0 231 178 33 33 chr3 28710246 28710336 -198814242 - L1M4 LINE L1 -2912 4045 3956 3079 253 83 7 chr3 28710377 28711184 -198813394 - L1M4 LINE L1 -5558 1301 434 410 360 61 32 chr3 28711902 28712180 -198812398 + L2 LINE L2 2574 2859 -455 441 36 0 0 chr3 28713388 28713402 -198811176 + (TG)n Simple_repeat Simple_repeat 1 69 0 441 36 0 0 chr3 28713402 28713457 -198811121 + (TG)n Simple_repeat Simple_repeat 2 56 0 203 337 22 22 chr3 28713638 28713727 -198810851 + L2 LINE L2 3174 3262 -10 235 204 0 0 chr3 28714212 28714256 -198810322 - L2 LINE L2 0 3272 3229 235 236 69 42 chr3 28715924 28715996 -198808582 - L2 LINE L2 -16 3256 3183 291 294 134 17 chr3 28716198 28716317 -198808261 - MIR SINE MIR -13 249 117 21 0 0 0 chr3 28716407 28716428 -198808150 + AT_rich Low_complexity Low_complexity 1 21 0 864 260 38 60 chr3 28716754 28717200 -198807378 - L1MC4 LINE L1 -484 7558 7123 1628 253 75 17 chr3 28717201 28718198 -198806380 + L1ME2 LINE L1 1882 2921 -3294 668 219 109 99 chr3 28718210 28718493 -198806085 + L1ME2 LINE L1 5566 5851 -384 731 236 34 0 chr3 28718540 28718718 -198805860 + L1ME2 LINE L1 5850 6033 -200 340 322 98 6 chr3 28718976 28719159 -198805419 - L1 LINE L1 -1779 4367 4168 515 332 10 5 chr3 28719461 28719654 -198804924 - MIR SINE MIR -56 206 13 1350 269 152 30 chr3 28719700 28720225 -198804353 - MLT1G1 LTR MaLR -6 589 1 957 215 114 20 chr3 28720279 28720582 -198803996 - MSTD LTR MaLR 0 396 38 236 342 13 13 chr3 28720663 28720677 -198803901 + MER5A DNA MER1_type 110 123 -66 2036 131 41 0 chr3 28720677 28720968 -198803610 - AluSx SINE Alu -9 303 1 236 342 13 13 chr3 28720968 28721032 -198803546 + MER5A DNA MER1_type 122 188 -1 187 373 0 0 chr3 28721034 28721109 -198803469 - MIR3 SINE MIR -49 159 85 25 0 0 0 chr3 28722007 28722032 -198802546 + AT_rich Low_complexity Low_complexity 1 25 0 282 143 0 0 chr3 28724200 28724249 -198800329 + (TG)n Simple_repeat Simple_repeat 2 50 0 651 247 18 0 chr3 28725314 28725484 -198799094 - MER5B DNA MER1_type -1 177 5 4092 199 52 24 chr3 28725609 28726578 -198798000 + L1MC3 LINE L1 6005 7000 -785 1146 204 54 57 chr3 28726601 28726935 -198797643 + L1MC3 LINE L1 7135 7467 -318 * 1401 263 12 14 chr3 28726933 28727279 -198797299 + L1MA7 LINE L1 2 346 -5935 450 321 24 12 chr3 28727326 28727496 -198797082 - L1M3f LINE L1 -4780 570 374 1758 280 35 3 chr3 28727673 28728894 -198795684 + L1MA7 LINE L1 857 2177 -4174 520 257 61 42 chr3 28729020 28729309 -198795269 + L1M4c LINE L1 2041 2344 -4038 * 8170 189 51 33 chr3 28729293 28731219 -198793359 + L1MA7 LINE L1 3504 5494 -1001 2378 118 11 32 chr3 28731219 28731591 -198792987 - THE1B LTR MaLR 0 364 1 8170 189 51 33 chr3 28731591 28732609 -198791969 + L1MA7 LINE L1 5494 6493 -2 877 246 70 0 chr3 28732650 28732951 -198791627 + L1MC3 LINE L1 7452 7773 -12 3097 174 25 0 chr3 28733132 28733662 -198790916 - MER6A DNA MER2_type -1 604 62 46 19 0 0 chr3 28733662 28733715 -198790863 + AT_rich Low_complexity Low_complexity 1 53 0 1779 237 31 34 chr3 28734637 28735272 -198789306 - L1M4c LINE L1 -3453 3395 2771 4224 201 22 16 chr3 28735272 28736327 -198788251 + L1M4c LINE L1 3373 4433 -2415 411 275 18 48 chr3 28737129 28737296 -198787282 - L2 LINE L2 0 3313 3152 250 338 103 31 chr3 28737502 28737792 -198786786 - L2 LINE L2 -728 2586 2276 26 74 0 0 chr3 28738046 28738100 -198786478 + AT_rich Low_complexity Low_complexity 1 54 0 2056 65 0 4 chr3 28738453 28738715 -198785863 + AluY SINE Alu 41 301 -10 2072 92 4 0 chr3 28738817 28739079 -198785499 + AluSp SINE Alu 1 263 -50 23 0 0 0 chr3 28739424 28739447 -198785131 + AT_rich Low_complexity Low_complexity 1 23 0 735 316 77 10 chr3 28739516 28739826 -198784752 + LTR16A LTR ERVL 120 450 0 2186 89 0 24 chr3 28739858 28740149 -198784429 + AluSx SINE Alu 1 284 -28 219 69 0 0 chr3 28741069 28741098 -198783480 + (TG)n Simple_repeat Simple_repeat 1 29 0 235 136 23 0 chr3 28743298 28743342 -198781236 + MER39 LTR ERV1 1 45 -662 * 256 169 0 68 chr3 28743339 28743398 -198781180 + MER34 LTR ERV1 68 122 -420 * 1189 200 67 13 chr3 28743369 28743768 -198780810 + MER39 LTR ERV1 257 707 0 440 279 61 77 chr3 28743796 28744043 -198780535 + MLT1J LTR MaLR 212 454 -57 2421 61 0 0 chr3 28745172 28745469 -198779109 + AluY SINE Alu 1 297 -14 330 26 0 0 chr3 28746513 28746552 -198778026 + (CA)n Simple_repeat Simple_repeat 2 40 0 4882 222 47 11 chr3 28746554 28748065 -198776513 + L1M4c LINE L1 2206 3775 -2607 * 5198 74 8 9 chr3 28748063 28748959 -198775619 + L1PA7 LINE L1 5059 5957 -197 1910 174 90 37 chr3 28748959 28749424 -198775154 + LTR2B LTR ERV1 1 490 0 1412 83 5 0 chr3 28749424 28749616 -198774962 + L1PA7 LINE L1 5954 6146 -8 292 314 19 0 chr3 28749865 28749970 -198774608 + L3b LINE CR1 1320 1426 -157 1470 258 108 29 chr3 28750117 28750812 -198773766 + MER20B DNA MER1_type 4 753 -30 30 0 0 0 chr3 28752058 28752088 -198772490 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 28753278 28753300 -198771278 + AT_rich Low_complexity Low_complexity 1 22 0 268 62 0 0 chr3 28753329 28753361 -198771217 + (A)n Simple_repeat Simple_repeat 1 32 0 21 82 0 0 chr3 28754758 28754807 -198769771 + AT_rich Low_complexity Low_complexity 1 49 0 189 0 0 0 chr3 28754939 28754960 -198769618 + (A)n Simple_repeat Simple_repeat 1 21 0 23 54 0 0 chr3 28755606 28755643 -198768935 + AT_rich Low_complexity Low_complexity 1 37 0 2270 187 46 6 chr3 28755924 28756401 -198768177 + L1MC3 LINE L1 7290 7785 0 232 303 0 15 chr3 28756640 28756706 -198767872 - L2 LINE L2 -5 3308 3244 261 282 99 0 chr3 28756800 28756871 -198767707 + L2 LINE L2 3220 3297 -16 363 249 171 39 chr3 28756914 28757095 -198767483 - MIR SINE MIR -38 224 20 32 26 0 0 chr3 28757101 28757140 -198767438 + AT_rich Low_complexity Low_complexity 1 39 0 252 0 0 0 chr3 28758129 28758157 -198766421 + (CAAAAA)n Simple_repeat Simple_repeat 1 28 0 396 208 0 0 chr3 28758466 28758562 -198766016 + (TG)n Simple_repeat Simple_repeat 2 97 0 268 191 111 0 chr3 28759002 28759065 -198765513 + MER115 DNA AcHobo 616 685 -8 2257 97 0 7 chr3 28759726 28760025 -198764553 - AluSg SINE Alu -13 297 1 2172 114 0 7 chr3 28760025 28760331 -198764247 - AluSx SINE Alu -8 304 1 992 220 0 0 chr3 28761655 28761841 -198762737 - MER5A DNA MER1_type -1 188 3 453 230 18 26 chr3 28761953 28762066 -198762512 + MER81 DNA DNA 3 114 0 2306 107 3 0 chr3 28762132 28762441 -198762137 - AluSx SINE Alu -2 310 1 209 200 20 0 chr3 28766010 28766060 -198758518 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 294 325 50 0 chr3 28767398 28767518 -198757060 - MIR SINE MIR -74 188 63 190 333 83 0 chr3 28767897 28767981 -198756597 + L2 LINE L2 2694 2784 -530 3998 212 49 30 chr3 28767981 28770012 -198754566 + L1MB7 LINE L1 4049 6161 -23 22 0 0 0 chr3 28770312 28770334 -198754244 + AT_rich Low_complexity Low_complexity 1 22 0 426 294 0 16 chr3 28770576 28770702 -198753876 - FLAM_A SINE Alu -9 124 1 184 0 97 0 chr3 28770969 28771000 -198753578 + T-rich Low_complexity Low_complexity 2 35 0 3508 102 30 26 chr3 28771291 28771857 -198752721 + LTR24B LTR ERV1 1 568 -8 714 74 0 0 chr3 28771936 28772031 -198752547 - AluY SINE Alu -4 307 213 2245 163 20 45 chr3 28773192 28773635 -198750943 - MSTB1 LTR MaLR 0 432 1 4836 180 9 0 chr3 28774282 28775175 -198749403 - L1 LINE L1 -1735 4411 3511 21 0 0 0 chr3 28775185 28775206 -198749372 + AT_rich Low_complexity Low_complexity 1 21 0 225 139 0 0 chr3 28775252 28775288 -198749290 - L1 LINE L1 -2659 3487 3452 371 175 0 0 chr3 28775288 28775351 -198749227 - Alu SINE Alu 0 302 240 1743 175 30 18 chr3 28775451 28775789 -198748789 + Tigger3(Golem) DNA MER2_type 2687 3028 -1 1485 186 0 4 chr3 28776446 28776699 -198747879 - AluJb SINE Alu -32 280 29 384 191 0 0 chr3 28777349 28777433 -198747145 + (TA)n Simple_repeat Simple_repeat 2 85 0 1955 157 0 3 chr3 28777488 28777793 -198746785 + AluJo SINE Alu 1 304 -8 1540 126 0 0 chr3 28778156 28778362 -198746216 + AluSx SINE Alu 5 210 -102 1246 278 85 17 chr3 28778472 28779116 -198745462 - L1M4 LINE L1 -1029 5117 4430 276 271 103 76 chr3 28779258 28779549 -198745029 + L1M3 LINE L1 3708 4006 -2140 9423 27 0 0 chr3 28779699 28780883 -198743695 - L1P LINE L1 -1362 4784 3601 766 261 37 0 chr3 28781021 28781239 -198743339 - L1ME3A LINE L1 -223 5947 5722 1675 120 35 0 chr3 28781309 28781592 -198742986 - L1MA8 LINE L1 -6 6285 5993 392 48 16 63 chr3 28781657 28781720 -198742858 - MADE1 DNA Mariner 0 80 21 356 333 30 0 chr3 28781727 28781961 -198742617 - L1ME3A LINE L1 -629 5541 5301 1439 170 0 0 chr3 28781982 28782206 -198742372 - AluJb SINE Alu -16 296 73 1029 230 0 5 chr3 28782306 28782515 -198742063 + L1M3 LINE L1 4773 4980 -1166 204 182 81 20 chr3 28782516 28782664 -198741914 + (TA)n Simple_repeat Simple_repeat 2 158 0 193 144 65 14 chr3 28782698 28782837 -198741741 + (TA)n Simple_repeat Simple_repeat 2 147 0 1154 203 55 93 chr3 28782837 28783206 -198741372 + L1M3 LINE L1 4969 5321 -859 1780 139 23 27 chr3 28783206 28783507 -198741071 + AluSx SINE Alu 4 303 -9 1154 203 55 93 chr3 28783507 28783711 -198740867 + L1M3 LINE L1 5321 5531 -649 3532 113 21 2 chr3 28783843 28784367 -198740211 - L1PA15 LINE L1 -5 6160 5627 21 0 0 0 chr3 28784494 28784515 -198740063 + AT_rich Low_complexity Low_complexity 1 21 0 2572 61 0 3 chr3 28784733 28785043 -198739535 - AluY SINE Alu -2 309 1 1871 125 56 11 chr3 28785484 28785771 -198738807 - AluJb SINE Alu -12 300 1 216 266 0 47 chr3 28785927 28785991 -198738587 - L2 LINE L2 -2 3311 3251 5684 18 0 0 chr3 28786757 28787416 -198737162 - L1P LINE L1 -1442 4704 4046 604 264 19 93 chr3 28787413 28787735 -198736843 - L1MDb LINE L1 -5338 1071 774 * 1305 332 56 38 chr3 28788495 28789208 -198735370 + L2 LINE L2 2032 2757 -557 672 129 0 0 chr3 28789218 28789319 -198735259 - AluSg/x SINE Alu -30 282 182 705 146 8 0 chr3 28789424 28789547 -198735031 - L1P LINE L1 -940 5206 5083 4240 197 30 15 chr3 28789671 28791142 -198733436 - L1MB2 LINE L1 -3 6404 4910 1751 192 10 27 chr3 28791254 28791655 -198732923 - L1MB2 LINE L1 -5363 1021 628 11128 38 0 2 chr3 28791655 28793787 -198730791 - L1PA5 LINE L1 0 6154 4027 910 73 0 0 chr3 28793787 28793910 -198730668 + L1PA5 LINE L1 3898 4020 -2126 28 0 0 0 chr3 28795893 28795921 -198728657 + AT_rich Low_complexity Low_complexity 1 28 0 2051 227 13 15 chr3 28795949 28796408 -198728170 + MLT1F LTR MaLR 85 542 0 327 340 0 0 chr3 28796676 28796776 -198727802 - Charlie8 DNA MER1_type -2160 257 158 2419 98 0 0 chr3 28796896 28797201 -198727377 - AluSc SINE Alu -2 307 3 299 275 46 30 chr3 28797361 28797492 -198727086 + L2 LINE L2 2926 3058 -214 591 318 58 25 chr3 28797665 28797907 -198726671 + LTR16A LTR ERVL 18 267 -183 334 150 75 0 chr3 28797943 28798023 -198726555 + LTR16A LTR ERVL 339 424 -26 411 350 93 53 chr3 28798895 28799326 -198725252 - L2 LINE L2 0 3272 2825 189 0 0 0 chr3 28800244 28800265 -198724313 + (GA)n Simple_repeat Simple_repeat 1 21 0 261 57 0 0 chr3 28800749 28800784 -198723794 + (GA)n Simple_repeat Simple_repeat 2 36 0 211 351 135 27 chr3 28802468 28802653 -198721925 + L2 LINE L2 3068 3272 0 2858 180 31 54 chr3 28803383 28803999 -198720579 + L1M4c LINE L1 20 621 -5763 198 0 0 0 chr3 28804002 28804024 -198720554 + (CAAAAA)n Simple_repeat Simple_repeat 4 25 0 402 310 32 26 chr3 28804652 28804807 -198719771 - L2 LINE L2 0 3313 3158 426 256 60 17 chr3 28804899 28805016 -198719562 + L2 LINE L2 3191 3312 -1 1998 124 0 40 chr3 28805142 28805464 -198719114 + AluSx SINE Alu 1 309 -3 1887 302 67 30 chr3 28805899 28806726 -198717852 + L2 LINE L2 2093 2949 -365 248 197 0 145 chr3 28806739 28806815 -198717763 + L2 LINE L2 3249 3313 0 360 369 108 21 chr3 28807147 28807434 -198717144 - L2 LINE L2 -440 2874 2563 740 291 51 33 chr3 28807715 28808048 -198716530 - L2 LINE L2 0 3313 2975 1769 164 57 11 chr3 28808415 28808768 -198715810 + L1MA7 LINE L1 5662 6030 -261 234 0 0 0 chr3 28808792 28808818 -198715760 + (CAA)n Simple_repeat Simple_repeat 3 28 0 251 301 27 0 chr3 28809330 28809403 -198715175 + MIR SINE MIR 67 141 -121 21 0 0 0 chr3 28809798 28809819 -198714759 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 28811330 28811350 -198713228 + (GGGTG)n Simple_repeat Simple_repeat 1 20 0 339 205 12 36 chr3 28814182 28814265 -198710313 - MIR SINE MIR -28 234 154 315 298 107 49 chr3 28814266 28814471 -198710107 - MIR SINE MIR -41 221 5 275 292 21 21 chr3 28814693 28814789 -198709789 + GA-rich Low_complexity Low_complexity 1 96 0 21 57 0 0 chr3 28814900 28814935 -198709643 + AT_rich Low_complexity Low_complexity 1 35 0 21 71 0 0 chr3 28814943 28814985 -198709593 + AT_rich Low_complexity Low_complexity 1 42 0 1524 201 128 38 chr3 28815144 28815596 -198708982 - MLT1D LTR MaLR 0 505 13 27 49 0 0 chr3 28815815 28815856 -198708722 + AT_rich Low_complexity Low_complexity 1 41 0 906 312 127 41 chr3 28815859 28816516 -198708062 + HAL1b LINE L1 47 775 -573 1997 156 57 23 chr3 28816516 28816868 -198707710 + THE1B LTR MaLR 1 364 0 906 312 127 41 chr3 28816868 28816944 -198707634 + HAL1b LINE L1 775 843 -505 207 69 0 0 chr3 28817339 28817368 -198707210 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 222 336 112 0 chr3 28817475 28817582 -198706996 + MIR SINE MIR 25 143 -65 21 0 0 0 chr3 28817761 28817782 -198706796 + AT_rich Low_complexity Low_complexity 1 21 0 1913 167 11 30 chr3 28817848 28818219 -198706359 - THE1B LTR MaLR 0 364 1 180 252 75 75 chr3 28818382 28818489 -198706089 - L2 LINE L2 0 3272 3166 272 321 12 0 chr3 28818781 28818865 -198705713 + GA-rich Low_complexity Low_complexity 3 87 0 19293 63 1 0 chr3 28819711 28822152 -198702426 + L1PA4 LINE L1 1 2443 -3703 8581 40 0 1 chr3 28822152 28823976 -198700602 + L1PA4 LINE L1 4321 6148 -7 21 36 0 0 chr3 28823982 28824010 -198700568 + AT_rich Low_complexity Low_complexity 1 28 0 1001 194 75 9 chr3 28825364 28825767 -198698811 - L1MC/D LINE L1 -758 5806 5484 690 260 16 0 chr3 28825759 28825951 -198698627 - L1MC/D LINE L1 -1287 5277 5083 * 1907 181 42 3 chr3 28825951 28826283 -198698295 + Tigger7 DNA MER2_type 4 348 -2139 675 240 7 7 chr3 28826275 28826421 -198698157 + Tigger7 DNA MER2_type 2343 2488 -3 * 1894 255 25 18 chr3 28826422 28827050 -198697528 - L1MC/D LINE L1 -1498 5066 4434 * 2328 227 90 48 chr3 28827044 28827912 -198696666 - L1MCa LINE L1 -5189 892 10 22 56 0 0 chr3 28828263 28828299 -198696279 + AT_rich Low_complexity Low_complexity 1 36 0 403 328 78 21 chr3 28829533 28829802 -198694776 + MLT1K LTR MaLR 38 337 -251 2662 248 49 8 chr3 28830492 28831450 -198693128 - L1M4 LINE L1 -2329 3817 2821 1969 164 42 33 chr3 28831715 28832262 -198692316 - MLT2A2 LTR ERVL 0 554 1 1768 211 38 34 chr3 28832262 28832764 -198691814 + L1ME1 LINE L1 5579 6082 -84 2474 101 93 5 chr3 28832764 28833171 -198691407 - LTR7 LTR ERV1 -7 443 1 7728 91 28 5 chr3 28833171 28834330 -198690248 - HERVH LTR ERV1 0 7713 6529 3893 75 11 49 chr3 28834303 28834939 -198689639 - HERVH LTR ERV1 -1333 6380 5769 * 1223 95 6 0 chr3 28834935 28835114 -198689464 - HERVH LTR ERV1 -3046 4667 4488 * 3214 111 2 6 chr3 28835116 28835620 -198688958 - HERVH LTR ERV1 -3720 3993 3492 898 109 27 0 chr3 28835610 28835757 -198688821 - HERVH LTR ERV1 -4423 3290 3140 * 10252 103 5 12 chr3 28835736 28837335 -198687243 - HERVH LTR ERV1 -4718 2995 1409 551 88 0 0 chr3 28837322 28837402 -198687176 - HERVH LTR ERV1 -7633 80 1 * 2521 103 100 5 chr3 28837404 28837813 -198686765 - LTR7 LTR ERV1 -2 448 1 335 223 29 0 chr3 28837816 28837919 -198686659 + L1MA10 LINE L1 6228 6333 -1 25 51 0 0 chr3 28837995 28838034 -198686544 + AT_rich Low_complexity Low_complexity 1 39 0 575 274 67 79 chr3 28838034 28838527 -198686051 - L1MC4a LINE L1 -1893 5915 5429 520 146 10 0 chr3 28838776 28838872 -198685706 + MLT1B LTR MaLR 56 152 -238 * 542 176 0 9 chr3 28838864 28838972 -198685606 + MLT1B LTR MaLR 67 173 -217 933 156 0 0 chr3 28838975 28839116 -198685462 + FRAM SINE Alu 31 171 -5 896 171 39 49 chr3 28839153 28839186 -198685392 + MLT1B LTR MaLR 188 220 -170 4005 136 60 35 chr3 28839186 28839946 -198684632 - MER4E LTR ERV1 0 779 1 896 171 39 49 chr3 28839946 28840117 -198684461 + MLT1B LTR MaLR 220 390 0 600 262 99 0 chr3 28840360 28840532 -198684046 + MER5A DNA MER1_type 1 189 0 416 305 99 33 chr3 28840673 28840886 -198683692 + MIR SINE MIR 13 239 -23 7674 104 122 87 chr3 28840983 28842624 -198681954 - pTR5 LTR ERV1 0 2438 741 12742 149 58 1 chr3 28842768 28845056 -198679522 + Tigger1 DNA MER2_type 1 2418 0 489 306 25 15 chr3 28845158 28845354 -198679224 + MLT1J2 LTR MaLR 2 199 -251 31 0 0 0 chr3 28845578 28845609 -198678969 + AT_rich Low_complexity Low_complexity 1 31 0 2133 135 3 3 chr3 28846173 28846485 -198678093 + AluSq SINE Alu 2 313 0 23 0 0 0 chr3 28846577 28846600 -198677978 + AT_rich Low_complexity Low_complexity 1 23 0 354 350 107 20 chr3 28847310 28847507 -198677071 - MIR SINE MIR -24 238 25 210 317 148 21 chr3 28847508 28847650 -198676928 - L3 LINE CR1 -19 1558 1399 715 296 79 12 chr3 28847714 28847954 -198676624 + MIR SINE MIR 2 257 -5 576 277 109 16 chr3 28847991 28848175 -198676403 - MIR SINE MIR -45 217 17 1857 123 3 68 chr3 28849495 28849825 -198674753 - AluSx SINE Alu 0 312 1 188 350 29 102 chr3 28849828 28850074 -198674504 + L2 LINE L2 2999 3226 -46 392 299 35 65 chr3 28850708 28850909 -198673669 - MIR SINE MIR 0 262 68 324 0 0 0 chr3 28851461 28851497 -198673081 + (TG)n Simple_repeat Simple_repeat 2 37 0 219 157 0 36 chr3 28851511 28851594 -198672984 + (TA)n Simple_repeat Simple_repeat 2 81 0 430 281 92 30 chr3 28851876 28852040 -198672538 - MER5A DNA MER1_type -15 174 1 24 32 0 0 chr3 28852057 28852088 -198672490 + AT_rich Low_complexity Low_complexity 1 31 0 207 162 0 0 chr3 28852714 28852751 -198671827 + (CAT)n Simple_repeat Simple_repeat 3 39 0 11835 207 33 39 chr3 28853096 28857004 -198667574 + L1MA4A LINE L1 7 3938 -2995 2023 116 22 0 chr3 28857004 28857311 -198667267 + AluSx SINE Alu 1 313 0 11835 207 33 39 chr3 28857311 28857669 -198666909 + L1MA4A LINE L1 3938 4297 -2636 1716 188 24 13 chr3 28857669 28857967 -198666611 + AluJb SINE Alu 1 301 -11 11835 207 33 39 chr3 28857967 28858723 -198665855 + L1MA4A LINE L1 4297 5056 -1877 339 25 0 0 chr3 28858723 28858763 -198665815 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 2152 101 0 18 chr3 28858770 28859056 -198665522 - AluSc SINE Alu -28 281 1 11835 207 33 39 chr3 28859056 28860067 -198664511 + L1MA4A LINE L1 5062 6023 -910 2144 134 0 0 chr3 28860067 28860365 -198664213 + AluSx SINE Alu 1 298 -14 11835 207 33 39 chr3 28860365 28860532 -198664046 + L1MA4A LINE L1 6023 6190 -743 189 0 0 0 chr3 28861541 28861562 -198663016 + (A)n Simple_repeat Simple_repeat 1 21 0 4090 167 22 10 chr3 28861562 28862372 -198662206 + L1MA4A LINE L1 6178 6997 -8 287 270 71 32 chr3 28863014 28863140 -198661438 + LTR16A1 LTR ERVL 327 457 0 1791 185 31 62 chr3 28863378 28863860 -198660718 + MLT1C LTR MaLR 1 467 0 189 0 0 0 chr3 28865484 28865505 -198659073 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr3 28867617 28867639 -198656939 + AT_rich Low_complexity Low_complexity 1 22 0 327 25 0 0 chr3 28869044 28869084 -198655494 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 2913 9 0 0 chr3 28870870 28871187 -198653391 - AluYb8 SINE Alu -1 317 1 230 307 52 52 chr3 28872110 28872263 -198652315 - MIR SINE MIR -101 161 9 21 0 0 0 chr3 28872442 28872463 -198652115 + AT_rich Low_complexity Low_complexity 1 21 0 652 119 17 8 chr3 28873984 28874102 -198650476 + CT-rich Low_complexity Low_complexity 3 121 0 24 53 0 0 chr3 28874644 28874682 -198649896 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr3 28874914 28874949 -198649629 + AT_rich Low_complexity Low_complexity 1 35 0 180 125 0 0 chr3 28876208 28876240 -198648338 + (CTG)n Simple_repeat Simple_repeat 2 33 0 606 111 30 0 chr3 28877216 28877315 -198647263 - L1PA13 LINE L1 -4 6159 6058 4035 144 9 0 chr3 28877323 28878015 -198646563 + L1P LINE L1 3613 4310 -1836 382 73 15 15 chr3 28879108 28879176 -198645402 + (TA)n Simple_repeat Simple_repeat 2 69 0 2183 116 0 3 chr3 28879176 28879470 -198645108 - AluSg1 SINE Alu -16 293 1 189 195 0 0 chr3 28880212 28880253 -198644325 + (TGGA)n Simple_repeat Simple_repeat 3 43 0 219 186 0 0 chr3 28880549 28880592 -198643986 + GA-rich Low_complexity Low_complexity 4 46 0 192 179 0 0 chr3 28882719 28882758 -198641820 + (CA)n Simple_repeat Simple_repeat 2 40 0 556 260 117 0 chr3 28883091 28883245 -198641333 - MIR SINE MIR -16 246 75 22 0 0 0 chr3 28884049 28884071 -198640507 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 28884103 28884124 -198640454 + AT_rich Low_complexity Low_complexity 1 21 0 695 277 27 27 chr3 28884212 28884504 -198640074 - L1ME4a LINE L1 -268 5853 5562 661 246 86 37 chr3 28886275 28886462 -198638116 + MER3 DNA MER1_type 14 209 0 209 348 72 0 chr3 28886766 28886835 -198637743 + L2 LINE L2 3149 3222 -50 202 284 263 0 chr3 28886927 28887022 -198637556 + MIR SINE MIR 17 136 -126 301 333 0 10 chr3 28887926 28888028 -198636550 - MIR SINE MIR -83 125 25 1136 261 51 20 chr3 28888444 28889058 -198635520 + MER97a DNA MER1_type? 1 674 -220 587 269 53 0 chr3 28889043 28889214 -198635364 + LTR16C LTR ERVL 312 491 0 * 199 282 90 13 chr3 28889924 28890002 -198634576 + MER5B DNA MER1_type 88 171 -7 1731 150 10 29 chr3 28890113 28890419 -198634159 - AluJo SINE Alu -8 304 5 222 37 0 0 chr3 28890999 28891026 -198633552 + (TG)n Simple_repeat Simple_repeat 2 28 0 270 277 169 38 chr3 28891165 28891349 -198633229 + MIR SINE MIR 34 241 -21 21 82 0 0 chr3 28893973 28894022 -198630556 + AT_rich Low_complexity Low_complexity 1 49 0 207 0 0 0 chr3 28894154 28894177 -198630401 + (A)n Simple_repeat Simple_repeat 1 23 0 23 54 0 0 chr3 28894823 28894860 -198629718 + AT_rich Low_complexity Low_complexity 1 37 0 2299 185 48 6 chr3 28895141 28895617 -198628961 + L1MC3 LINE L1 7290 7785 0 232 303 0 15 chr3 28895856 28895922 -198628656 - L2 LINE L2 -5 3308 3244 261 282 99 0 chr3 28896016 28896087 -198628491 + L2 LINE L2 3220 3297 -16 376 243 171 39 chr3 28896130 28896311 -198628267 - MIR SINE MIR -38 224 20 32 26 0 0 chr3 28896317 28896356 -198628222 + AT_rich Low_complexity Low_complexity 1 39 0 252 0 0 0 chr3 28897345 28897373 -198627205 + (CAAAAA)n Simple_repeat Simple_repeat 1 28 0 330 222 0 0 chr3 28897684 28897774 -198626804 + (TG)n Simple_repeat Simple_repeat 2 91 0 262 191 111 0 chr3 28898214 28898277 -198626301 + MER115 DNA AcHobo 616 685 -8 2257 97 0 7 chr3 28898938 28899237 -198625341 - AluSg SINE Alu -13 297 1 2209 111 0 7 chr3 28899237 28899544 -198625034 - AluSx SINE Alu -7 305 1 1020 215 0 0 chr3 28900868 28901054 -198623524 - MER5A DNA MER1_type -1 188 3 433 239 18 26 chr3 28901166 28901279 -198623299 + MER81 DNA DNA 3 114 0 2258 108 3 0 chr3 28901345 28901650 -198622928 - AluSx SINE Alu -6 306 1 209 200 20 0 chr3 28905217 28905267 -198619311 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 294 325 50 0 chr3 28906605 28906725 -198617853 - MIR SINE MIR -74 188 63 190 333 83 0 chr3 28907104 28907188 -198617390 + L2 LINE L2 2694 2784 -530 3998 212 47 30 chr3 28907188 28909227 -198615351 + L1MB7 LINE L1 4049 6167 -17 1112 271 30 107 chr3 28909233 28909413 -198615165 + L2 LINE L2 2773 2965 -348 11727 33 5 0 chr3 28909413 28911603 -198612975 + L1PA5 LINE L1 3956 6151 -3 1112 271 30 107 chr3 28911603 28912006 -198612572 + L2 LINE L2 2965 3313 0 330 26 0 0 chr3 28912193 28912232 -198612346 + (TTG)n Simple_repeat Simple_repeat 1 39 0 2017 128 0 0 chr3 28912237 28912511 -198612067 - AluSg SINE Alu -36 274 1 1645 167 3 33 chr3 28913048 28913348 -198611230 + AluJb SINE Alu 1 291 -21 1865 174 48 34 chr3 28913401 28913839 -198610739 + L1MB7 LINE L1 5741 6184 0 25 0 0 0 chr3 28914364 28914389 -198610189 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr3 28915373 28915395 -198609183 + AT_rich Low_complexity Low_complexity 1 22 0 205 338 39 42 chr3 28915773 28915964 -198608614 - MIR SINE MIR -31 231 43 1944 129 7 0 chr3 28916127 28916434 -198608144 + AluSg SINE Alu 1 309 0 2096 115 0 3 chr3 28917557 28917870 -198606708 + AluSq SINE Alu 1 312 0 30 27 0 0 chr3 28919231 28919268 -198605310 + AT_rich Low_complexity Low_complexity 1 37 0 247 209 0 0 chr3 28920870 28920913 -198603665 + 5S rRNA rRNA 1 43 -78 341 372 128 38 chr3 28920923 28921213 -198603365 + L2 LINE L2 2592 2907 -407 323 333 66 16 chr3 28921676 28921859 -198602719 - MIR3 SINE MIR -15 193 2 2351 223 46 32 chr3 28922729 28922976 -198601602 + L1ME2 LINE L1 5431 5673 -491 2245 106 3 0 chr3 28922976 28923278 -198601300 + AluSg SINE Alu 1 303 -7 2351 223 46 32 chr3 28923278 28923497 -198601081 + L1ME2 LINE L1 5673 5887 -277 2097 98 3 20 chr3 28923497 28923793 -198600785 + AluSc SINE Alu 1 291 -18 2351 223 46 32 chr3 28923793 28924039 -198600539 + L1ME2 LINE L1 5887 6154 -10 194 298 35 0 chr3 28925025 28925082 -198599496 + L2 LINE L2 3213 3271 -1 300 322 158 23 chr3 28925879 28926050 -198598528 - MIR3 SINE MIR -5 203 10 405 102 0 0 chr3 28926090 28926149 -198598429 + (TC)n Simple_repeat Simple_repeat 2 60 0 369 0 0 0 chr3 28926149 28926190 -198598388 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr3 28926899 28926920 -198597658 + AT_rich Low_complexity Low_complexity 1 21 0 791 240 99 99 chr3 28927447 28927809 -198596769 + MER57B LTR ERV1 67 428 -6 407 346 156 4 chr3 28927819 28928076 -198596502 + L2 LINE L2 2530 2825 -489 211 178 14 41 chr3 28928821 28928894 -198595684 + (TA)n Simple_repeat Simple_repeat 1 71 0 211 297 51 76 chr3 28929164 28929282 -198595296 + L2 LINE L2 3152 3266 -6 509 138 0 0 chr3 28930033 28930113 -198594465 - MADE1 DNA Mariner 0 80 1 1091 177 51 75 chr3 28931990 28932089 -198592489 + AluJo SINE Alu 40 140 -172 265 24 48 0 chr3 28932089 28932131 -198592447 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1091 177 51 75 chr3 28932131 28932285 -198592293 + AluJo SINE Alu 140 287 -25 215 393 17 0 chr3 28932961 28933078 -198591500 + L2 LINE L2 3195 3313 0 325 256 241 0 chr3 28933311 28933444 -198591134 + MLT1I LTR MaLR 218 382 -27 2280 116 0 0 chr3 28934954 28935256 -198589322 - AluSx SINE Alu -10 302 1 200 365 0 52 chr3 28936271 28936386 -198588192 - L3 LINE CR1 -75 1502 1394 672 221 13 6 chr3 28936388 28936546 -198588032 - FRAM SINE Alu -17 159 1 213 316 51 13 chr3 28936550 28936629 -198587949 - L3 LINE CR1 -177 1400 1319 * 246 320 10 41 chr3 28936613 28936710 -198587868 + L2 LINE L2 3220 3313 0 516 350 89 20 chr3 28936710 28937101 -198587477 - L3 LINE CR1 -253 1324 907 1035 241 9 5 chr3 28937101 28937313 -198587265 + MER58A DNA MER1_type 1 213 -11 2813 240 125 31 chr3 28937682 28938809 -198585769 - L1MD2 LINE L1 -16 6343 5098 1687 225 199 42 chr3 28938818 28939432 -198585146 - LTR41 LTR ERVL -6 767 58 807 279 13 96 chr3 28939600 28939998 -198584580 - L1MDa LINE L1 -6162 378 14 191 256 23 0 chr3 28940567 28940610 -198583968 - L2 LINE L2 -18 3254 3211 314 365 7 0 chr3 28941508 28941645 -198582933 - L3 LINE CR1 -3 1574 1437 225 313 87 35 chr3 28941744 28941859 -198582719 - L2 LINE L2 -41 3272 3152 314 307 89 34 chr3 28941894 28942073 -198582505 - L3 LINE CR1 -193 1384 1196 447 306 69 46 chr3 28942559 28942775 -198581803 + MIR SINE MIR 31 251 -11 273 75 0 0 chr3 28943184 28943224 -198581354 + (CA)n Simple_repeat Simple_repeat 2 41 0 27 0 0 0 chr3 28945002 28945029 -198579549 + AT_rich Low_complexity Low_complexity 1 27 0 889 180 0 0 chr3 28945045 28945184 -198579394 - AluJo SINE Alu -38 274 136 596 255 176 30 chr3 28945259 28945526 -198579052 + MLT1G1 LTR MaLR 42 347 -248 651 247 68 0 chr3 28946458 28946604 -198577974 + MER58A DNA MER1_type 2 157 0 207 69 0 0 chr3 28946788 28946817 -198577761 + (CA)n Simple_repeat Simple_repeat 2 30 0 183 62 21 62 chr3 28947243 28947291 -198577287 + (CAAAAA)n Simple_repeat Simple_repeat 4 49 0 1747 156 33 4 chr3 28947354 28947670 -198576908 + AluSx SINE Alu 1 324 0 750 168 15 0 chr3 28948485 28948616 -198575962 - AluJo SINE Alu -169 133 1 227 333 130 0 chr3 28949404 28949527 -198575051 + MIR SINE MIR 35 173 -89 3781 223 8 1 chr3 28950217 28951096 -198573482 + L1PA15 LINE L1 2798 3682 -2464 256 125 31 0 chr3 28951101 28951165 -198573413 + (TA)n Simple_repeat Simple_repeat 2 67 0 447 118 0 50 chr3 28951199 28951318 -198573260 + (TA)n Simple_repeat Simple_repeat 1 113 0 342 214 0 61 chr3 28951319 28951417 -198573161 + L1MC4 LINE L1 6614 6705 -1337 203 86 0 29 chr3 28951418 28951453 -198573125 + (TA)n Simple_repeat Simple_repeat 2 35 0 7479 199 20 18 chr3 28951462 28952416 -198572162 + L1PA15 LINE L1 3697 4647 -1518 2017 146 0 13 chr3 28952416 28952725 -198571853 + AluSx SINE Alu 1 305 -7 7479 199 20 18 chr3 28952725 28953549 -198571029 + L1PA15 LINE L1 4647 5481 -684 2125 76 0 18 chr3 28953549 28953824 -198570754 + AluSc SINE Alu 35 304 -5 7479 199 20 18 chr3 28953824 28954511 -198570067 + L1PA15 LINE L1 5481 6165 0 3882 131 44 3 chr3 28955611 28956230 -198568348 + LTR9B LTR ERV1 1 644 0 22 0 0 0 chr3 28956717 28956739 -198567839 + AT_rich Low_complexity Low_complexity 1 22 0 429 204 11 10 chr3 28956863 28956960 -198567618 + MER34 LTR ERV1 1 92 -450 465 220 96 39 chr3 28956963 28957250 -198567328 + LTR48 LTR ERV1 166 491 -153 211 269 0 0 chr3 28959143 28959195 -198565383 + MIR3 SINE MIR 146 197 -11 208 245 102 48 chr3 28960048 28960195 -198564383 - L2 LINE L2 -962 2352 2198 3840 183 20 19 chr3 28960195 28960929 -198563649 + MER49 LTR ERV1 177 911 -12 918 242 175 14 chr3 28960989 28961286 -198563292 + MLT1I LTR MaLR 63 407 -2 22 0 0 0 chr3 28961593 28961615 -198562963 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 28961918 28961946 -198562632 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 28962198 28962220 -198562358 + AT_rich Low_complexity Low_complexity 1 22 0 436 294 0 16 chr3 28962463 28962589 -198561989 - FLAM_A SINE Alu -9 124 1 184 0 97 0 chr3 28962856 28962887 -198561691 + T-rich Low_complexity Low_complexity 2 35 0 3500 102 30 26 chr3 28963178 28963744 -198560834 + LTR24B LTR ERV1 1 568 -8 721 74 0 0 chr3 28963823 28963918 -198560660 - AluY SINE Alu -4 307 213 2477 77 0 0 chr3 28966722 28967021 -198557557 + AluSc SINE Alu 3 301 -8 191 32 65 0 chr3 28968064 28968095 -198556483 + A-rich Low_complexity Low_complexity 2 34 0 27 0 0 0 chr3 28968323 28968350 -198556228 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr3 28968378 28968406 -198556172 + AT_rich Low_complexity Low_complexity 1 28 0 1802 186 12 66 chr3 28969275 28969699 -198554879 + MER57A LTR ERV1 3 403 0 27 49 0 0 chr3 28970322 28970363 -198554215 + AT_rich Low_complexity Low_complexity 1 41 0 274 132 0 0 chr3 28970374 28970412 -198554166 + MER34C LTR ERV1 1 38 -547 2416 163 72 118 chr3 28970415 28971163 -198553415 + LTR8A LTR ERV1 1 714 -13 * 2624 156 72 40 chr3 28971158 28971702 -198552876 + MER34C LTR ERV1 22 582 -3 27 49 0 0 chr3 28971813 28971854 -198552724 + AT_rich Low_complexity Low_complexity 1 41 0 748 249 21 47 chr3 28972728 28972921 -198551657 + MER5A DNA MER1_type 1 188 -1 180 333 0 0 chr3 28974978 28975023 -198549555 + L2 LINE L2 2923 2967 -305 301 278 0 82 chr3 28976196 28976293 -198548285 - L2 LINE L2 -1 3271 3183 1361 185 63 35 chr3 28976324 28976611 -198547967 + AluJo SINE Alu 1 295 -17 2087 130 0 7 chr3 28977198 28977490 -198547088 - AluSg SINE Alu -19 291 2 217 348 90 28 chr3 28978005 28978183 -198546395 - MIR SINE MIR -58 204 16 543 330 82 54 chr3 28978506 28979151 -198545427 - L2 LINE L2 -456 2858 2196 21 57 0 0 chr3 28979936 28979971 -198544607 + AT_rich Low_complexity Low_complexity 1 35 0 2403 73 13 0 chr3 28980259 28980560 -198544018 + AluSp SINE Alu 1 305 -8 182 210 123 49 chr3 28980626 28980707 -198543871 + MER5C DNA MER1_type 36 122 -202 456 304 44 20 chr3 28981364 28981568 -198543010 - L2 LINE L2 -1227 2087 1879 237 132 0 0 chr3 28982017 28982055 -198542523 + L2 LINE L2 3270 3307 -6 583 206 16 8 chr3 28982836 28982962 -198541616 - MIR SINE MIR -110 152 26 359 306 60 99 chr3 28983178 28983613 -198540965 + MLT1J1 LTR MaLR 29 446 0 368 286 31 20 chr3 28984631 28984729 -198539849 + MIR SINE MIR 43 141 -121 2370 169 24 9 chr3 28984743 28985163 -198539415 + MSTB LTR MaLR 1 426 0 4442 185 32 3 chr3 28986036 28986918 -198537660 + L1MC1 LINE L1 5417 6323 -10 204 40 0 0 chr3 28986920 28986945 -198537633 + (GA)n Simple_repeat Simple_repeat 1 25 0 520 220 76 0 chr3 28987056 28987188 -198537390 + MLT1L LTR MaLR 423 564 -51 205 296 93 0 chr3 28987628 28987682 -198536896 - L2 LINE L2 -5 3308 3250 198 0 0 0 chr3 28988200 28988222 -198536356 + (TTTTTA)n Simple_repeat Simple_repeat 2 23 0 333 305 102 50 chr3 28988863 28989064 -198535514 - MIR SINE MIR -17 245 35 1111 282 86 15 chr3 28991419 28991816 -198532762 - L2 LINE L2 0 3313 2889 878 197 113 84 chr3 28991816 28991978 -198532600 - MER96B DNA MER1_type? 0 417 261 2215 94 0 38 chr3 28991978 28992298 -198532280 - AluSx SINE Alu -4 308 1 878 197 113 84 chr3 28992298 28992516 -198532062 - MER96B DNA MER1_type? -156 261 26 1789 264 104 16 chr3 28992531 28993148 -198531430 - L2 LINE L2 -418 2896 2226 35 41 0 0 chr3 28994527 28994576 -198530002 + AT_rich Low_complexity Low_complexity 1 49 0 556 232 8 8 chr3 28996122 28996247 -198528331 + L1MC1 LINE L1 6204 6328 -5 1295 212 10 26 chr3 28997184 28997490 -198527088 - AluJo SINE Alu 0 312 12 1218 178 98 46 chr3 28997490 28997816 -198526762 + MER61A LTR ERV1 1 343 0 2067 148 12 96 chr3 28997816 28997884 -198526694 + MER61A-int LTR ERV1 1 73 -5144 1943 97 14 17 chr3 28997884 28998173 -198526405 + AluSx SINE Alu 1 288 -24 2067 148 12 96 chr3 28998173 28998801 -198525777 + MER61A-int LTR ERV1 73 777 -4440 335 70 0 0 chr3 28998794 28998837 -198525741 + MER61A-int LTR ERV1 1320 1362 -3855 * 20577 105 40 15 chr3 28998853 29002459 -198522119 + MER61A-int LTR ERV1 1655 5201 -16 188 35 35 0 chr3 29002459 29002488 -198522090 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2025 96 22 0 chr3 29002494 29002764 -198521814 - AluSx SINE Alu -36 276 1 1430 148 126 19 chr3 29002789 29003099 -198521479 + MER61A LTR ERV1 1 343 0 200 336 47 28 chr3 29003676 29003783 -198520795 + MIR SINE MIR 35 143 -65 267 81 0 0 chr3 29004865 29004902 -198519676 - tRNA-Glu-GAG tRNA tRNA -38 37 1 2089 123 0 0 chr3 29005349 29005634 -198518944 - AluSg SINE Alu -25 285 1 1536 182 20 135 chr3 29007602 29008096 -198516482 + MLT1D LTR MaLR 1 437 -68 11531 158 17 4 chr3 29008096 29010069 -198514509 - Tigger1 DNA MER2_type -1 2417 420 29969 109 27 65 chr3 29010070 29016454 -198508124 - L1PA7 LINE L1 0 6154 12 1734 161 34 0 chr3 29016463 29016755 -198507823 - Tigger1 DNA MER2_type -1988 430 129 429 136 0 0 chr3 29016771 29016837 -198507741 + MLT1D LTR MaLR 440 505 0 30 27 0 0 chr3 29017122 29017159 -198507419 + AT_rich Low_complexity Low_complexity 1 37 0 408 337 76 12 chr3 29017224 29017396 -198507182 + L3 LINE CR1 1382 1564 -13 23 33 0 0 chr3 29017579 29017609 -198506969 + AT_rich Low_complexity Low_complexity 1 30 0 2053 187 0 6 chr3 29017879 29018242 -198506336 + MLT1A1 LTR MaLR 1 361 -4 32 0 0 0 chr3 29019171 29019203 -198505375 + AT_rich Low_complexity Low_complexity 1 32 0 758 188 0 0 chr3 29020268 29020396 -198504182 - FRAM SINE Alu -48 128 1 215 253 103 35 chr3 29020444 29020531 -198504047 + MIR SINE MIR 167 259 -3 184 294 0 59 chr3 29020964 29021032 -198503546 - MIR SINE MIR 0 262 199 1899 122 31 17 chr3 29021196 29021484 -198503094 + AluSx SINE Alu 1 292 -20 1362 235 47 41 chr3 29021542 29021989 -198502589 - L1ME1 LINE L1 -4 6162 5713 23 54 0 0 chr3 29023235 29023272 -198501306 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr3 29023640 29023661 -198500917 + AT_rich Low_complexity Low_complexity 1 21 0 5823 27 0 1 chr3 29023844 29024548 -198500030 - L1P LINE L1 -3425 2721 2019 3129 35 3 0 chr3 29024548 29024919 -198499659 + L1PA3 LINE L1 5779 6150 -5 189 240 107 40 chr3 29025555 29025630 -198498948 - MIR SINE MIR -109 99 20 1269 264 124 7 chr3 29025859 29026405 -198498173 - L1ME3 LINE L1 0 6162 5553 1318 275 78 70 chr3 29026409 29027092 -198497486 - MER21B LTR ERV1 -149 714 27 412 202 12 0 chr3 29027287 29027371 -198497207 + MER39 LTR ERV1 1 85 -622 * 1139 165 87 13 chr3 29027367 29027597 -198496981 + MER39 LTR ERV1 461 707 0 633 336 11 19 chr3 29027696 29027958 -198496620 - MIR SINE MIR 0 262 3 2321 94 0 0 chr3 29028631 29028929 -198495649 + AluSq SINE Alu 1 298 -15 1270 246 67 41 chr3 29028956 29029671 -198494907 + L1MC5 LINE L1 7194 7927 -34 22 0 0 0 chr3 29029706 29029728 -198494850 + AT_rich Low_complexity Low_complexity 1 22 0 456 325 92 55 chr3 29030366 29030714 -198493864 + L2 LINE L2 2904 3264 -8 6056 137 14 23 chr3 29031723 29032657 -198491921 - L1MA5 LINE L1 -2 6298 5379 1789 169 3 23 chr3 29032657 29032965 -198491613 - AluJb SINE Alu -6 306 5 6056 137 14 23 chr3 29032965 29033753 -198490825 - L1MA5 LINE L1 -921 5379 4585 24 0 0 0 chr3 29034446 29034470 -198490108 + AT_rich Low_complexity Low_complexity 1 24 0 1379 242 120 19 chr3 29034472 29034890 -198489688 - MLT1C LTR MaLR -7 460 1 303 243 54 0 chr3 29035604 29035678 -198488900 + L1MC4 LINE L1 6626 6703 -1339 183 167 42 42 chr3 29036349 29036397 -198488181 + L2 LINE L2 3255 3302 -11 288 193 68 45 chr3 29036647 29036735 -198487843 - MER5B DNA MER1_type -6 172 83 313 290 48 11 chr3 29036883 29037048 -198487530 - MIR SINE MIR -62 146 5 249 108 0 0 chr3 29037607 29037644 -198486934 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2043 99 37 0 chr3 29037646 29037919 -198486659 - AluSg SINE Alu -27 283 1 32 57 0 0 chr3 29038587 29038640 -198485938 + AT_rich Low_complexity Low_complexity 1 53 0 2064 100 3 17 chr3 29038793 29039132 -198485446 - AluSx SINE Alu 0 335 1 22 0 0 0 chr3 29039259 29039281 -198485297 + AT_rich Low_complexity Low_complexity 1 22 0 298 29 0 0 chr3 29039322 29039357 -198485221 - U2 snRNA snRNA -153 35 1 1399 215 9 57 chr3 29040740 29040890 -198483688 + AluJo SINE Alu 1 130 -182 186 43 0 0 chr3 29040890 29040913 -198483665 + (CA)n Simple_repeat Simple_repeat 2 24 0 1399 215 9 57 chr3 29040913 29041078 -198483500 + AluJo SINE Alu 130 301 -11 329 266 106 18 chr3 29042882 29042995 -198481583 - L2 LINE L2 -40 3232 3110 432 318 85 30 chr3 29043342 29043742 -198480836 + L1ME3A LINE L1 4415 4836 -1310 1010 303 50 35 chr3 29043766 29044162 -198480416 - L2 LINE L2 0 3313 2912 273 311 84 4 chr3 29044181 29044406 -198480172 + L1ME3A LINE L1 4879 5121 -1025 701 270 105 58 chr3 29044499 29045088 -198479490 + L1ME3A LINE L1 5268 5884 -286 24 53 0 0 chr3 29045660 29045698 -198478880 + AT_rich Low_complexity Low_complexity 1 38 0 1302 214 31 10 chr3 29045767 29046056 -198478522 + AluJo SINE Alu 1 295 -17 342 282 129 24 chr3 29046831 29047001 -198477577 + MIR SINE MIR 43 230 -32 189 94 0 0 chr3 29047397 29047429 -198477149 + (A)n Simple_repeat Simple_repeat 1 32 0 501 266 25 60 chr3 29049173 29049372 -198475206 - LTR16A1 LTR ERVL 0 457 266 368 143 42 17 chr3 29050275 29050394 -198474184 + (TA)n Simple_repeat Simple_repeat 1 122 0 1074 198 156 8 chr3 29051369 29051632 -198472946 - AluJb SINE Alu 0 302 1 25 75 0 0 chr3 29051867 29051920 -198472658 + AT_rich Low_complexity Low_complexity 1 53 0 24 67 0 0 chr3 29054232 29054277 -198470301 + AT_rich Low_complexity Low_complexity 1 45 0 223 240 0 0 chr3 29054425 29054475 -198470103 - MIR SINE MIR -108 154 105 3970 84 20 7 chr3 29054664 29055211 -198469367 + MER41A LTR ERV1 1 554 0 262 286 113 8 chr3 29055583 29055831 -198468747 + HAL1 LINE L1 981 1254 -1253 2205 128 31 0 chr3 29056803 29057156 -198467422 - THE1B LTR MaLR 0 364 1 230 255 39 98 chr3 29057280 29057367 -198467211 - MIR SINE MIR -94 114 32 2878 12 0 3 chr3 29057367 29057686 -198466892 - AluYb8 SINE Alu 0 318 1 230 255 39 98 chr3 29057686 29057700 -198466878 - MIR SINE MIR -176 32 19 526 303 108 48 chr3 29058065 29058498 -198466080 + L1MC4a LINE L1 5472 5930 -1878 362 336 29 0 chr3 29058697 29058834 -198465744 + MLT1J2 LTR MaLR 51 191 -259 237 263 26 13 chr3 29058949 29059025 -198465553 + MLT1I LTR MaLR 319 395 -14 244 313 121 38 chr3 29059354 29059693 -198464885 - L2 LINE L2 -1216 2098 1732 410 235 12 0 chr3 29060496 29060577 -198464001 + MIR SINE MIR 105 186 -76 379 316 70 9 chr3 29061061 29061276 -198463302 + LTR33 LTR ERVL 294 521 0 322 280 72 96 chr3 29061361 29061486 -198463092 - MIR SINE MIR -65 143 21 212 179 0 0 chr3 29062016 29062055 -198462523 + (TA)n Simple_repeat Simple_repeat 1 39 0 328 291 51 32 chr3 29062126 29062284 -198462294 - MIR SINE MIR -56 206 46 2056 122 26 3 chr3 29062859 29063162 -198461416 - AluSg SINE Alu 0 310 1 478 338 88 4 chr3 29063283 29063511 -198461067 + MIR SINE MIR 11 257 -5 464 323 69 67 chr3 29064435 29064896 -198459682 + MLT1K LTR MaLR 125 586 -2 458 239 72 43 chr3 29065196 29065272 -198459306 - MIR SINE MIR -18 244 161 1499 236 129 53 chr3 29065272 29065342 -198459236 - MLT1E LTR MaLR 0 593 530 2294 66 0 30 chr3 29065342 29065644 -198458934 + AluY SINE Alu 1 293 -18 1499 236 129 53 chr3 29065644 29066124 -198458454 - MLT1E LTR MaLR -63 530 1 458 239 72 43 chr3 29066124 29066185 -198458393 - MIR SINE MIR -101 161 103 322 302 11 110 chr3 29066838 29066947 -198457631 - MIR SINE MIR -11 251 166 1968 95 0 69 chr3 29066947 29067251 -198457327 - AluSg SINE Alu -27 283 1 322 302 11 110 chr3 29067251 29067323 -198457255 - MIR SINE MIR -96 166 88 219 69 0 0 chr3 29067833 29067862 -198456716 + (T)n Simple_repeat Simple_repeat 1 29 0 1348 294 20 31 chr3 29067929 29068382 -198456196 - MER69 DNA AcHobo -778 448 1 1646 157 74 84 chr3 29068932 29069326 -198455252 - MLT1B LTR MaLR 0 390 1 2195 110 3 0 chr3 29069440 29069740 -198454838 - AluSc SINE Alu -8 301 1 267 270 122 0 chr3 29069777 29069851 -198454727 - MLT1J LTR MaLR -349 162 80 2098 165 61 20 chr3 29069902 29070309 -198454269 + MSTB LTR MaLR 1 424 -2 216 0 0 0 chr3 29070647 29070671 -198453907 + (TG)n Simple_repeat Simple_repeat 2 25 0 457 290 62 7 chr3 29072157 29072302 -198452276 + MIR3 SINE MIR 9 161 -47 575 311 106 8 chr3 29072308 29072543 -198452035 - MIR SINE MIR 0 262 5 192 312 18 37 chr3 29072643 29072752 -198451826 + MIR3 SINE MIR 10 116 -92 1179 220 38 107 chr3 29072886 29073382 -198451196 + MLT1C LTR MaLR 6 467 0 21 0 0 0 chr3 29073466 29073487 -198451091 + AT_rich Low_complexity Low_complexity 1 21 0 2224 229 16 20 chr3 29073701 29074198 -198450380 + LTR31 LTR ERV1 109 603 -16 303 28 0 0 chr3 29074257 29074293 -198450285 + (TG)n Simple_repeat Simple_repeat 2 37 0 297 0 0 0 chr3 29076408 29076441 -198448137 + (TG)n Simple_repeat Simple_repeat 1 33 0 285 29 0 0 chr3 29076719 29076753 -198447825 + (TG)n Simple_repeat Simple_repeat 1 34 0 399 295 152 28 chr3 29077887 29078104 -198446474 + MIR SINE MIR 2 245 -17 1536 168 3 63 chr3 29078224 29078540 -198446038 + AluJo SINE Alu 11 307 -5 347 310 50 0 chr3 29080621 29080721 -198443857 - MER3 DNA MER1_type -104 105 1 464 235 157 69 chr3 29080783 29081000 -198443578 - MIR SINE MIR -6 256 21 209 198 163 35 chr3 29081138 29081224 -198443354 - MIR SINE MIR -6 256 160 369 0 0 0 chr3 29082101 29082142 -198442436 + (TG)n Simple_repeat Simple_repeat 1 41 0 322 239 11 65 chr3 29083201 29083293 -198441285 + MIR SINE MIR 20 106 -102 323 355 36 12 chr3 29083479 29083645 -198440933 - MER5B DNA MER1_type -2 176 7 340 345 36 0 chr3 29083490 29083629 -198440949 + MER5A DNA MER1_type 24 167 -22 217 196 20 0 chr3 29083667 29083718 -198440860 - MIR SINE MIR 0 262 211 266 314 17 81 chr3 29084856 29085028 -198439550 - MIR SINE MIR -55 207 47 2179 119 3 10 chr3 29085047 29085359 -198439219 - AluSp SINE Alu -3 310 1 299 337 50 0 chr3 29085415 29085516 -198439062 + MIR3 SINE MIR 60 165 -43 411 325 117 10 chr3 29085628 29085825 -198438753 - MIR SINE MIR -4 258 41 370 301 88 22 chr3 29086878 29087014 -198437564 - L2 LINE L2 -1 3312 3168 207 343 57 14 chr3 29087030 29087170 -198437408 - L2 LINE L2 -88 3225 3080 1759 198 0 3 chr3 29088768 29089081 -198435497 + AluJo SINE Alu 1 312 0 587 167 29 23 chr3 29089085 29089259 -198435319 + GA-rich Low_complexity Low_complexity 4 178 0 21 36 0 0 chr3 29089691 29089719 -198434859 + AT_rich Low_complexity Low_complexity 1 28 0 220 407 23 0 chr3 29089990 29090076 -198434502 - L2 LINE L2 -22 3250 3163 736 307 13 9 chr3 29090152 29090383 -198434195 - MIR SINE MIR -2 260 29 267 0 22 44 chr3 29090388 29090433 -198434145 + (TTG)n Simple_repeat Simple_repeat 2 45 0 4803 91 12 4 chr3 29090433 29091124 -198433454 - L1PB1 LINE L1 -10 6141 5446 289 158 0 0 chr3 29091126 29091180 -198433398 - MLT2A2 LTR ERVL -8 512 403 231 175 0 0 chr3 29091195 29091252 -198433326 + (TA)n Simple_repeat Simple_repeat 2 58 0 3149 69 20 7 chr3 29091252 29091660 -198432918 - MLT2A2 LTR ERVL -40 413 1 3358 172 6 9 chr3 29091660 29092446 -198432132 - L1P5 LINE L1 -702 5449 4670 1636 237 69 18 chr3 29093068 29093561 -198431017 + LTR40a LTR ERVL 2 519 0 727 254 53 37 chr3 29094012 29094256 -198430322 + L2 LINE L2 3062 3309 -4 451 268 82 9 chr3 29094288 29094508 -198430070 - L1ME4a LINE L1 -182 5939 5704 26 50 0 0 chr3 29094654 29094694 -198429884 + AT_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr3 29094927 29094947 -198429631 + (TTTC)n Simple_repeat Simple_repeat 2 21 0 1607 208 50 14 chr3 29095267 29095627 -198428951 + MLT1A2 LTR MaLR 1 373 -1 243 246 18 0 chr3 29096187 29096244 -198428334 + GA-rich Low_complexity Low_complexity 2 59 0 26 0 0 0 chr3 29096279 29096305 -198428273 + AT_rich Low_complexity Low_complexity 1 26 0 885 128 0 61 chr3 29096494 29096607 -198427971 - FLAM_C SINE Alu -173 139 36 1796 201 26 124 chr3 29096607 29097285 -198427293 + LTR9 LTR ERV1 1 612 0 885 128 0 61 chr3 29097285 29097319 -198427259 - FLAM_C SINE Alu -276 36 1 2385 176 77 15 chr3 29097452 29097970 -198426608 + L1MB3 LINE L1 5634 6183 0 442 212 0 30 chr3 29098645 29098744 -198425834 - MER3 DNA MER1_type -113 96 1 3273 181 22 0 chr3 29098910 29099501 -198425077 - MER6A DNA MER2_type -1 604 1 190 308 33 22 chr3 29101242 29101333 -198423245 - MIR SINE MIR -140 122 31 466 239 6 6 chr3 29102177 29102344 -198422234 + CT-rich Low_complexity Low_complexity 1 167 0 21 0 0 0 chr3 29102797 29102818 -198421760 + AT_rich Low_complexity Low_complexity 1 21 0 1929 137 38 32 chr3 29102938 29103310 -198421268 + THE1C LTR MaLR 1 374 -1 628 244 6 38 chr3 29103771 29103931 -198420647 - MIR SINE MIR -105 157 3 235 362 38 0 chr3 29103924 29104029 -198420549 + MER5A DNA MER1_type 4 112 -77 * 36 62 0 0 chr3 29105378 29105442 -198419136 + AT_rich Low_complexity Low_complexity 1 64 0 2555 51 0 29 chr3 29105859 29106175 -198418403 + AluY SINE Alu 1 307 -4 213 121 0 0 chr3 29106373 29106406 -198418172 + (T)n Simple_repeat Simple_repeat 1 33 0 2407 47 0 0 chr3 29107336 29107632 -198416946 - L1PA4 LINE L1 -3 6152 5857 189 195 0 0 chr3 29108135 29108176 -198416402 + (TA)n Simple_repeat Simple_repeat 2 42 0 254 237 17 0 chr3 29108342 29108401 -198416177 + (TA)n Simple_repeat Simple_repeat 2 61 0 951 197 208 4 chr3 29109445 29109714 -198414864 - MER5C DNA MER1_type 0 324 1 248 224 61 61 chr3 29109918 29109971 -198414607 - MER5B DNA MER1_type 0 178 123 180 0 0 0 chr3 29109971 29109991 -198414587 + (CAA)n Simple_repeat Simple_repeat 2 21 0 248 224 61 61 chr3 29109991 29110035 -198414543 - MER5B DNA MER1_type -54 124 81 181 291 55 0 chr3 29110088 29110143 -198414435 - MIR SINE MIR -88 174 117 22 56 0 0 chr3 29110296 29110332 -198414246 + AT_rich Low_complexity Low_complexity 1 36 0 299 366 54 37 chr3 29110599 29110848 -198413730 + MIR3 SINE MIR 12 262 0 392 274 18 18 chr3 29111006 29111119 -198413459 + L3 LINE CR1 1440 1552 -25 1838 160 18 75 chr3 29111125 29111524 -198413054 - MLT1B LTR MaLR -14 376 1 341 313 92 31 chr3 29111553 29111716 -198412862 + MIR3 SINE MIR 30 202 -6 211 132 57 0 chr3 29113409 29113462 -198411116 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 191 241 17 35 chr3 29113470 29113528 -198411050 - L2 LINE L2 0 3272 3216 240 214 0 0 chr3 29113877 29113933 -198410645 + CT-rich Low_complexity Low_complexity 2 57 0 197 344 33 33 chr3 29113956 29114046 -198410532 + L2 LINE L2 3220 3309 -4 201 267 67 0 chr3 29114321 29114366 -198410212 + MIR SINE MIR 203 250 -12 185 282 0 0 chr3 29114334 29114373 -198410205 + L2 LINE L2 3264 3302 -11 * 461 248 110 0 chr3 29114529 29114638 -198409940 + L2 LINE L2 3189 3309 -4 190 186 47 0 chr3 29114727 29114770 -198409808 + MER5A DNA MER1_type 68 112 -77 251 200 0 14 chr3 29114955 29115025 -198409553 + CT-rich Low_complexity Low_complexity 2 70 0 180 224 0 86 chr3 29116269 29116327 -198408251 + L2 LINE L2 3219 3271 -1 23 68 0 0 chr3 29116787 29116831 -198407747 + AT_rich Low_complexity Low_complexity 1 44 0 547 336 81 5 chr3 29117746 29117969 -198406609 - MIR SINE MIR -21 241 2 270 292 23 0 chr3 29118008 29118104 -198406474 - MIR SINE MIR -60 148 79 258 56 0 0 chr3 29118749 29118785 -198405793 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr3 29118962 29118983 -198405595 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr3 29121586 29121622 -198402956 + AT_rich Low_complexity Low_complexity 1 36 0 1882 153 0 3 chr3 29123271 29123558 -198401020 - AluJb SINE Alu -26 286 1 1016 282 32 42 chr3 29124196 29124576 -198400002 + LTR16A LTR ERVL 16 391 -59 206 250 36 71 chr3 29125730 29125814 -198398764 + MIR SINE MIR 170 250 -12 27 29 0 0 chr3 29126338 29126372 -198398206 + AT_rich Low_complexity Low_complexity 1 34 0 2993 283 70 3 chr3 29126719 29127394 -198397184 + MER72 LTR ERV1 1 720 -2 221 57 29 0 chr3 29127825 29127860 -198396718 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 213 178 0 0 chr3 29128292 29128337 -198396241 + T-rich Low_complexity Low_complexity 1 45 0 1009 164 19 39 chr3 29129238 29129445 -198395133 - MER3 DNA MER1_type 0 209 7 332 282 92 0 chr3 29130157 29130288 -198394290 - L2 LINE L2 -1282 2032 1890 480 18 0 0 chr3 29130821 29130878 -198393700 + (TGGA)n Simple_repeat Simple_repeat 4 60 0 426 289 9 9 chr3 29131358 29131472 -198393106 - MIR SINE MIR -130 132 19 21 0 0 0 chr3 29132024 29132045 -198392533 + AT_rich Low_complexity Low_complexity 1 21 0 344 313 124 35 chr3 29132513 29132714 -198391864 - MIR SINE MIR -18 244 26 30 0 0 0 chr3 29135236 29135266 -198389312 + AT_rich Low_complexity Low_complexity 1 30 0 241 303 0 13 chr3 29135592 29135668 -198388910 + GA-rich Low_complexity Low_complexity 2 76 0 21 0 0 0 chr3 29135964 29135985 -198388593 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 29136317 29136339 -198388239 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 29137156 29137183 -198387395 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr3 29137330 29137356 -198387222 + AT_rich Low_complexity Low_complexity 1 26 0 243 0 0 0 chr3 29137397 29137424 -198387154 + (A)n Simple_repeat Simple_repeat 1 27 0 201 159 0 0 chr3 29137787 29137831 -198386747 + A-rich Low_complexity Low_complexity 1 44 0 582 269 57 14 chr3 29138382 29138594 -198385984 + L3b LINE CR1 1104 1324 -259 187 322 17 0 chr3 29138751 29138810 -198385768 - MIR3 SINE MIR -5 203 144 788 221 13 72 chr3 29138813 29139048 -198385530 - MER58A DNA MER1_type 0 224 4 627 219 53 43 chr3 29139060 29139247 -198385331 - MER5A DNA MER1_type 0 189 1 1620 228 83 51 chr3 29139312 29139459 -198385119 + MLT1E2 LTR MaLR 9 150 -476 2017 105 4 0 chr3 29139459 29139726 -198384852 + AluY SINE Alu 24 291 -20 1620 228 83 51 chr3 29139726 29140165 -198384413 + MLT1E2 LTR MaLR 150 616 -10 640 35 23 0 chr3 29140465 29140552 -198384026 + (TC)n Simple_repeat Simple_repeat 1 89 0 999 159 164 22 chr3 29142563 29142844 -198381734 - MER33 DNA MER1_type -12 312 1 552 292 32 40 chr3 29142988 29143297 -198381281 + MLT1H LTR MaLR 10 302 -228 1606 148 41 47 chr3 29143498 29143815 -198380763 - L1MC1 LINE L1 0 6333 6019 773 181 14 14 chr3 29144003 29144147 -198380431 - FRAM SINE Alu -21 155 12 253 238 59 20 chr3 29144378 29144479 -198380099 - L1MC1 LINE L1 -360 5806 5702 21 95 0 0 chr3 29144488 29144551 -198380027 + AT_rich Low_complexity Low_complexity 1 63 0 189 0 0 0 chr3 29145231 29145252 -198379326 + (A)n Simple_repeat Simple_repeat 1 21 0 452 200 350 0 chr3 29145790 29145930 -198378648 - MER5A DNA MER1_type 0 189 1 24 32 0 0 chr3 29146245 29146276 -198378302 + AT_rich Low_complexity Low_complexity 1 31 0 273 208 0 0 chr3 29146308 29146380 -198378198 + (CATA)n Simple_repeat Simple_repeat 1 72 0 997 196 16 0 chr3 29146771 29146955 -198377623 + MER5A DNA MER1_type 1 187 -2 346 375 82 35 chr3 29147087 29147685 -198376893 + L2 LINE L2 925 1550 -1764 2038 182 20 24 chr3 29147803 29148254 -198376324 - L1MB4 LINE L1 0 6180 5732 450 256 67 30 chr3 29148255 29148419 -198376159 - MIR SINE MIR -81 181 12 293 333 119 11 chr3 29149327 29149588 -198374990 + LTR16C LTR ERVL 200 488 -3 280 302 75 9 chr3 29149597 29149703 -198374875 + MIR SINE MIR 38 150 -58 1323 71 12 0 chr3 29149973 29150143 -198374435 - AluSg/x SINE Alu -4 308 137 2495 38 27 0 chr3 29150143 29150435 -198374143 - AluY SINE Alu -11 300 1 229 291 0 0 chr3 29150884 29150939 -198373639 + MIR SINE MIR 66 120 -142 217 362 21 21 chr3 29151046 29151140 -198373438 + MIR SINE MIR 23 116 -146 32 57 0 0 chr3 29151846 29151899 -198372679 + AT_rich Low_complexity Low_complexity 1 53 0 498 305 84 5 chr3 29152037 29152227 -198372351 - MIR SINE MIR -29 233 29 515 313 126 0 chr3 29152311 29152539 -198372039 + MIR SINE MIR 8 262 0 471 278 80 19 chr3 29153135 29153297 -198371281 + MIR SINE MIR 2 173 -89 360 290 101 18 chr3 29153294 29153463 -198371115 - L2 LINE L2 0 3313 3131 * 401 197 0 0 chr3 29153587 29153653 -198370925 + Charlie5 DNA MER1_type 2 67 -2545 4477 173 17 9 chr3 29153668 29154700 -198369878 + L1PB4 LINE L1 5103 6138 -18 7057 53 3 3 chr3 29154703 29155601 -198368977 + L1PA7 LINE L1 5256 6153 -1 773 161 90 5 chr3 29155688 29155899 -198368679 + Charlie5 DNA MER1_type 2335 2563 -49 2190 129 0 16 chr3 29155920 29156237 -198368341 - AluSx SINE Alu 0 312 1 467 287 0 8 chr3 29156310 29156432 -198368146 - L2 LINE L2 -251 3062 2942 288 209 52 163 chr3 29156645 29156817 -198367761 + MIR SINE MIR 33 185 -77 2443 86 34 23 chr3 29157262 29157613 -198366965 - THE1A LTR MaLR 0 355 1 11531 99 6 1 chr3 29157613 29159184 -198365394 - THE1A-int LTR MaLR 0 1580 1 2722 82 3 0 chr3 29159184 29159538 -198365040 - THE1A LTR MaLR 0 355 1 338 297 34 0 chr3 29159570 29159688 -198364890 + LTR33 LTR ERVL 385 506 -15 187 250 39 0 chr3 29160024 29160076 -198364502 - MIR SINE MIR -204 58 5 986 177 0 0 chr3 29160595 29160776 -198363802 - AluSg/x SINE Alu 0 315 135 523 259 77 28 chr3 29160781 29160924 -198363654 + L2 LINE L2 3164 3313 0 745 301 21 14 chr3 29161059 29161338 -198363240 - Charlie8 DNA MER1_type -2136 281 1 389 284 104 22 chr3 29161672 29161806 -198362772 - MIR3 SINE MIR -12 196 52 313 143 48 0 chr3 29162376 29162439 -198362139 - L1MB8 LINE L1 0 6178 6113 477 71 24 12 chr3 29162892 29162976 -198361602 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 442 261 60 27 chr3 29164024 29164208 -198360370 + MIR3 SINE MIR 8 197 -11 415 320 160 0 chr3 29164351 29164526 -198360052 - MIR SINE MIR -19 243 41 225 0 0 0 chr3 29164962 29164987 -198359591 + (CA)n Simple_repeat Simple_repeat 1 25 0 249 33 0 0 chr3 29165586 29165616 -198358962 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 1659 245 40 21 chr3 29165832 29166362 -198358216 + L1ME1 LINE L1 5571 6110 -56 296 369 56 10 chr3 29166790 29166988 -198357590 - L3 LINE CR1 -10 1567 1361 198 250 0 80 chr3 29167051 29167139 -198357439 + MIR SINE MIR 61 141 -67 2539 53 0 0 chr3 29167140 29167441 -198357137 - AluY SINE Alu -10 301 1 23 68 0 0 chr3 29168619 29168663 -198355915 + AT_rich Low_complexity Low_complexity 1 44 0 224 328 40 52 chr3 29168855 29169029 -198355549 + L2 LINE L2 2488 2659 -655 3339 245 137 133 chr3 29169469 29170933 -198353645 + L2 LINE L2 373 1829 -1484 628 273 17 25 chr3 29170933 29171171 -198353407 - L1MA9 LINE L1 -38 6274 6039 3339 245 137 133 chr3 29171171 29171209 -198353369 + L2 LINE L2 1829 1865 -1448 2861 170 19 16 chr3 29171209 29171791 -198352787 - L1PB4 LINE L1 -7 6149 5566 3339 245 137 133 chr3 29171791 29172875 -198351703 + L2 LINE L2 1865 3237 -76 182 61 0 30 chr3 29172875 29172908 -198351670 + (TTTTG)n Simple_repeat Simple_repeat 4 35 0 3339 245 137 133 chr3 29172908 29172938 -198351640 + L2 LINE L2 3237 3265 -48 1991 86 0 41 chr3 29172947 29173214 -198351364 + AluSc SINE Alu 6 261 -48 181 298 0 0 chr3 29173238 29173285 -198351293 + L2 LINE L2 3226 3272 0 248 234 31 47 chr3 29173574 29173638 -198350940 + L2 LINE L2 2685 2747 -567 2158 132 48 25 chr3 29173652 29174008 -198350570 + THE1B LTR MaLR 1 364 0 825 260 6 0 chr3 29174023 29174204 -198350374 - MER5A DNA MER1_type -6 183 2 761 292 36 20 chr3 29174559 29174809 -198349769 - MIR SINE MIR -6 256 3 353 268 41 0 chr3 29175237 29175334 -198349244 + MER5A DNA MER1_type 4 104 -85 3611 118 65 2 chr3 29175433 29175999 -198348579 + LTR43 LTR ERV1 1 602 0 331 244 64 0 chr3 29176015 29176093 -198348485 + MIR SINE MIR 66 148 -60 875 186 6 38 chr3 29176114 29176297 -198348281 - MER5B DNA MER1_type -1 177 1 912 171 10 93 chr3 29176311 29176379 -198348199 + MER5A DNA MER1_type 7 79 -110 1712 170 28 3 chr3 29176379 29176662 -198347916 + AluJo SINE Alu 1 290 -22 912 171 10 93 chr3 29176662 29176786 -198347792 + MER5A DNA MER1_type 79 183 -6 2288 90 3 3 chr3 29177918 29178218 -198346360 + AluSx SINE Alu 1 300 -12 7623 141 4 12 chr3 29179189 29180577 -198344001 + L1PA7 LINE L1 938 2314 -3832 261 0 0 0 chr3 29180723 29180752 -198343826 + (A)n Simple_repeat Simple_repeat 1 29 0 20847 98 46 0 chr3 29180752 29184560 -198340018 + L1PA7 LINE L1 2310 6170 0 303 265 210 19 chr3 29184820 29184982 -198339596 - MIR SINE MIR -19 243 51 * 419 304 143 51 chr3 29184974 29185247 -198339331 + L2 LINE L2 2999 3296 -17 182 150 25 0 chr3 29186180 29186220 -198338358 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 375 185 74 19 chr3 29186763 29186871 -198337707 - L2 LINE L2 -8 3305 3192 441 281 77 39 chr3 29187120 29187523 -198337055 - L1MC/D LINE L1 -2000 5808 5399 1894 164 25 25 chr3 29187577 29187944 -198336634 - L1MC1 LINE L1 0 6333 5967 425 275 8 36 chr3 29188224 29188403 -198336175 - MIR SINE MIR -63 145 21 1671 184 29 29 chr3 29188670 29189044 -198335534 + MLT1A2 LTR MaLR 1 374 0 328 309 32 65 chr3 29189286 29189514 -198335064 + MIR SINE MIR 31 245 -17 593 280 74 34 chr3 29189587 29190007 -198334571 - LTR33A LTR ERVL -25 498 2 241 353 12 0 chr3 29190167 29190252 -198334326 + MIR SINE MIR 39 124 -138 324 284 114 52 chr3 29191391 29191464 -198333114 - MIR SINE MIR -19 243 176 601 271 6 22 chr3 29191464 29191645 -198332933 + MER5B DNA MER1_type 1 178 0 324 284 114 52 chr3 29191645 29191782 -198332796 - MIR SINE MIR -86 176 20 461 274 159 25 chr3 29192017 29192174 -198332404 - MER5A DNA MER1_type -3 186 9 407 313 18 0 chr3 29192308 29192420 -198332158 + MER81 DNA DNA 1 114 0 508 313 38 33 chr3 29192431 29192642 -198331936 + MIR SINE MIR 48 259 -3 204 226 0 19 chr3 29193163 29193216 -198331362 + L2 LINE L2 3214 3265 -7 204 270 131 73 chr3 29193863 29194000 -198330578 + MIR SINE MIR 84 228 -34 * 483 326 116 5 chr3 29193961 29194185 -198330393 - MIR SINE MIR 0 262 14 240 35 0 0 chr3 29194963 29194992 -198329586 + (TG)n Simple_repeat Simple_repeat 2 30 0 311 243 199 58 chr3 29195077 29195247 -198329331 - L1MC/D LINE L1 -1982 5826 5615 2142 95 0 0 chr3 29195247 29195520 -198329058 + AluSx SINE Alu 29 301 -11 311 243 199 58 chr3 29195520 29195575 -198329003 - L1MC/D LINE L1 -2193 5615 5569 25 0 0 0 chr3 29196082 29196107 -198328471 + AT_rich Low_complexity Low_complexity 1 25 0 258 289 0 74 chr3 29196236 29196357 -198328221 - MIR SINE MIR -49 213 102 227 307 18 61 chr3 29197005 29197119 -198327459 - MIR SINE MIR -62 146 38 285 266 156 9 chr3 29197185 29197294 -198327284 - MIR SINE MIR -79 183 59 205 304 87 0 chr3 29197363 29197432 -198327146 + L3 LINE CR1 1501 1575 -2 280 324 0 0 chr3 29198199 29198270 -198326308 + MER5A DNA MER1_type 81 151 -38 336 332 62 26 chr3 29198294 29199054 -198325524 + L1M4 LINE L1 4561 5347 -799 * 1863 237 21 2 chr3 29199051 29199523 -198325055 + L1M4 LINE L1 4627 5107 -1039 2525 87 5 14 chr3 29199642 29200011 -198324567 + L1PA11 LINE L1 5809 6174 0 230 334 108 39 chr3 29200172 29200477 -198324101 - L2 LINE L2 -737 2577 2252 499 258 111 42 chr3 29200478 29200668 -198323910 + MER63A DNA MER1_type 2 204 -6 201 162 0 0 chr3 29200952 29200989 -198323589 + A-rich Low_complexity Low_complexity 4 40 0 27 29 0 0 chr3 29201429 29201463 -198323115 + AT_rich Low_complexity Low_complexity 1 34 0 666 290 53 32 chr3 29201616 29201995 -198322583 - L1ME4a LINE L1 -249 5872 5486 28 0 0 0 chr3 29202850 29202878 -198321700 + AT_rich Low_complexity Low_complexity 1 28 0 352 309 14 22 chr3 29203195 29203334 -198321244 + MLT1H LTR MaLR 24 161 -388 378 189 50 151 chr3 29203486 29203645 -198320933 + MLT1H LTR MaLR 407 549 0 41 0 0 0 chr3 29204239 29204280 -198320298 + AT_rich Low_complexity Low_complexity 1 41 0 335 321 0 0 chr3 29205708 29205814 -198318764 - MIR SINE MIR 0 262 157 273 341 37 12 chr3 29207900 29208030 -198316548 - MIR SINE MIR -27 181 47 196 264 48 104 chr3 29208137 29208262 -198316316 + MIR SINE MIR 72 189 -73 21 0 0 0 chr3 29209302 29209323 -198315255 + AT_rich Low_complexity Low_complexity 1 21 0 415 194 31 10 chr3 29210098 29210196 -198314382 - MER96B DNA MER1_type? -1 416 317 26 64 0 0 chr3 29210196 29210243 -198314335 + AT_rich Low_complexity Low_complexity 1 47 0 1373 175 35 32 chr3 29210264 29210578 -198314000 + MER96B DNA MER1_type? 93 407 -10 1593 181 30 79 chr3 29210782 29211213 -198313365 - L1MA9 LINE L1 -1 6311 5902 310 254 174 22 chr3 29211454 29211592 -198312986 - MIR SINE MIR -56 206 48 21 0 0 0 chr3 29212352 29212373 -198312205 + AT_rich Low_complexity Low_complexity 1 21 0 284 306 99 0 chr3 29212390 29212501 -198312077 + HAL1 LINE L1 19 140 -2367 497 280 73 71 chr3 29212816 29213184 -198311394 + HAL1 LINE L1 532 900 -1607 1137 35 0 0 chr3 29213254 29213395 -198311183 + AluY SINE Alu 171 311 0 325 301 46 31 chr3 29213425 29213621 -198310957 + HAL1 LINE L1 971 1169 -1338 1962 113 4 4 chr3 29213623 29213898 -198310680 + AluSx SINE Alu 4 278 -34 883 275 121 67 chr3 29214118 29214922 -198309656 + HAL1 LINE L1 1654 2500 -7 207 232 0 0 chr3 29214924 29214980 -198309598 + (CA)n Simple_repeat Simple_repeat 1 56 0 330 228 79 26 chr3 29215828 29215942 -198308636 + L1ME4a LINE L1 6000 6119 -2 2224 101 0 0 chr3 29217159 29217456 -198307122 - AluSc SINE Alu -12 297 1 968 220 5 5 chr3 29217783 29217983 -198306595 + MER58A DNA MER1_type 14 213 -11 387 274 112 46 chr3 29269404 29270073 -198254505 + L1M4 LINE L1 2636 3348 -2798 256 258 70 39 chr3 29270818 29270946 -198253632 + L1M1 LINE L1 5311 5442 -860 1760 170 7 16 chr3 29270970 29271276 -198253302 + AluJb SINE Alu 1 303 -9 2196 108 0 3 chr3 29271365 29271662 -198252916 - AluY SINE Alu -15 296 1 674 294 33 22 chr3 29271744 29272166 -198252412 + L1ME3A LINE L1 5518 5945 -225 207 100 0 0 chr3 29272727 29272757 -198251821 + (CA)n Simple_repeat Simple_repeat 2 31 0 235 259 0 0 chr3 29273759 29273813 -198250765 + (TA)n Simple_repeat Simple_repeat 2 55 0 406 283 156 30 chr3 29274694 29274963 -198249615 - MLT1L LTR MaLR -4 611 309 1657 138 32 44 chr3 29275061 29275402 -198249176 + MER1B DNA MER1_type 1 337 0 24 0 0 0 chr3 29276106 29276130 -198248448 + AT_rich Low_complexity Low_complexity 1 24 0 342 336 18 9 chr3 29276194 29276304 -198248274 + MIR SINE MIR 17 127 -135 280 0 182 0 chr3 29276308 29276352 -198248226 - MADE1 DNA Mariner -1 79 28 284 308 19 28 chr3 29276353 29276460 -198248118 + MIR SINE MIR 141 246 -16 209 211 53 0 chr3 29276611 29276668 -198247910 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 338 264 23 11 chr3 29277851 29277938 -198246640 - L2 LINE L2 -2 3311 3224 2070 221 48 13 chr3 29277944 29278419 -198246159 - MLT1D LTR MaLR -2 503 12 762 280 143 28 chr3 29278432 29279004 -198245574 - L2 LINE L2 -107 3206 2579 615 65 0 0 chr3 29279043 29279120 -198245458 + MADE1 DNA Mariner 4 80 0 1925 144 10 0 chr3 29279133 29279425 -198245153 + AluSx SINE Alu 1 295 -17 23 54 0 0 chr3 29280434 29280471 -198244107 + AT_rich Low_complexity Low_complexity 1 37 0 236 339 105 29 chr3 29281935 29282106 -198242472 + L3 LINE CR1 1393 1576 -1 411 250 31 62 chr3 29282362 29282490 -198242088 - L2 LINE L2 0 3313 3190 685 257 180 80 chr3 29282512 29282963 -198241615 + MLT1D LTR MaLR 3 498 -7 269 345 37 12 chr3 29282965 29283126 -198241452 + MIR SINE MIR 13 145 -63 1601 150 129 24 chr3 29283979 29284312 -198240266 + THE1C LTR MaLR 8 375 0 1109 214 68 21 chr3 29285830 29286111 -198238467 - MER58B DNA MER1_type 0 341 48 243 265 254 6 chr3 29286542 29286723 -198237855 - MLT1H LTR MaLR -19 530 305 450 236 147 61 chr3 29286741 29286882 -198237696 - MLT1H LTR MaLR -326 204 91 2252 122 0 0 chr3 29286882 29287177 -198237401 + AluSc SINE Alu 1 295 -14 450 236 147 61 chr3 29287177 29287275 -198237303 - MLT1H LTR MaLR -439 91 3 458 271 110 7 chr3 29288008 29288163 -198236415 - MER104 DNA Tc2 0 180 10 225 315 37 28 chr3 29288219 29288327 -198236251 - MIR SINE MIR -50 212 104 22 0 0 0 chr3 29288327 29288349 -198236229 + AT_rich Low_complexity Low_complexity 1 22 0 591 338 32 32 chr3 29288832 29289202 -198235376 - MLT1I LTR MaLR -2 407 38 562 306 40 30 chr3 29290415 29290716 -198233862 - L1MC4a LINE L1 -1892 5916 5613 294 217 0 0 chr3 29291192 29291261 -198233317 + (TA)n Simple_repeat Simple_repeat 2 70 0 30 109 0 0 chr3 29291269 29291397 -198233181 + AT_rich Low_complexity Low_complexity 1 128 0 255 274 96 14 chr3 29291478 29291551 -198233027 - MLT1I LTR MaLR -105 304 226 220 238 8 127 chr3 29293395 29293521 -198231057 - MIR SINE MIR -44 218 108 203 161 0 0 chr3 29294310 29294341 -198230237 + A-rich Low_complexity Low_complexity 4 34 0 207 161 0 0 chr3 29294696 29294727 -198229851 + polypyrimidine Low_complexity Low_complexity 6 36 0 184 347 14 28 chr3 29296250 29296322 -198228256 - MIR SINE MIR -115 93 23 239 91 0 0 chr3 29297017 29297050 -198227528 - MER3 DNA MER1_type -161 48 16 2580 178 28 46 chr3 29297115 29297682 -198226896 - L1MB1 LINE L1 -1 6167 5611 1716 182 51 2 chr3 29297677 29298106 -198226472 + L1 LINE L1 3119 3568 -2578 * 23 33 0 0 chr3 29298752 29298782 -198225796 + AT_rich Low_complexity Low_complexity 1 30 0 213 39 0 0 chr3 29298892 29298918 -198225660 + (T)n Simple_repeat Simple_repeat 1 26 0 1350 179 13 4 chr3 29299099 29299334 -198225244 - AluJo SINE Alu -75 237 1 322 208 30 10 chr3 29299334 29299435 -198225143 - Charlie2 DNA MER1_type -88 2774 2672 1164 327 50 40 chr3 29299492 29300556 -198224022 + L1MEc LINE L1 55 1129 -5267 1135 230 53 13 chr3 29300580 29300884 -198223694 + L1ME3 LINE L1 5504 5819 -347 192 77 0 0 chr3 29301386 29301412 -198223166 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 308 326 68 15 chr3 29302952 29303084 -198221494 + MIR SINE MIR 53 191 -71 767 232 68 12 chr3 29303134 29303384 -198221194 + L1ME3 LINE L1 5896 6159 -3 602 232 129 0 chr3 29303728 29303883 -198220695 + MER45A DNA AcHobo 3 177 -1 283 290 0 0 chr3 29304013 29304075 -198220503 + L2 LINE L2 3246 3307 -6 1287 283 139 29 chr3 29305478 29306039 -198218539 + L2 LINE L2 2039 2661 -653 236 303 32 32 chr3 29306327 29306482 -198218096 + L2 LINE L2 3011 3165 -148 339 82 0 0 chr3 29306545 29306594 -198217984 + MLT2A2 LTR ERVL 1 49 -404 360 194 28 0 chr3 29306595 29306667 -198217911 + L2 LINE L2 3209 3282 -31 1175 148 16 0 chr3 29307275 29307464 -198217114 + AluSc SINE Alu 104 295 -14 1897 179 16 25 chr3 29307659 29308027 -198216551 + MLT1A1 LTR MaLR 1 365 0 607 292 67 5 chr3 29309473 29309682 -198214896 - MER58A DNA MER1_type 0 224 3 452 253 213 13 chr3 29313171 29313321 -198211257 - MER5A DNA MER1_type -6 183 4 281 314 137 11 chr3 29313707 29313882 -198210696 + MIR SINE MIR 54 250 -12 288 0 0 0 chr3 29314336 29314368 -198210210 + (T)n Simple_repeat Simple_repeat 1 32 0 23 54 0 0 chr3 29315282 29315319 -198209259 + AT_rich Low_complexity Low_complexity 1 37 0 2102 108 0 10 chr3 29315461 29315757 -198208821 + AluSq SINE Alu 1 293 -20 786 145 99 29 chr3 29315803 29315975 -198208603 - MER5A DNA MER1_type -5 184 1 592 189 88 40 chr3 29316190 29316254 -198208324 + MER5B DNA MER1_type 21 81 -97 1082 217 94 60 chr3 29316254 29316637 -198207941 - MSTD LTR MaLR 0 396 1 592 189 88 40 chr3 29316637 29316720 -198207858 + MER5B DNA MER1_type 81 175 -3 744 210 155 0 chr3 29317086 29317267 -198207311 + MER3 DNA MER1_type 1 209 0 736 244 56 5 chr3 29317419 29317632 -198206946 - MER58A DNA MER1_type 0 224 1 1086 317 101 21 chr3 29320126 29320850 -198203728 + L2 LINE L2 2534 3313 0 291 283 29 43 chr3 29320859 29320997 -198203581 + Charlie7 DNA MER1_type 2129 2264 -348 2207 77 31 3 chr3 29321014 29321300 -198203278 + AluSq SINE Alu 1 294 -19 31 88 0 0 chr3 29321309 29321389 -198203189 + AT_rich Low_complexity Low_complexity 1 80 0 227 305 114 8 chr3 29322552 29322683 -198201895 - MIR SINE MIR -60 202 58 4717 177 6 22 chr3 29322763 29323811 -198200767 - L1MB1 LINE L1 0 6168 5136 2681 188 19 83 chr3 29323823 29324574 -198200004 - L1MB1 LINE L1 -1322 4824 4122 404 240 16 33 chr3 29325112 29325233 -198199345 + MER5C DNA MER1_type 2 120 -204 290 233 0 58 chr3 29325265 29325351 -198199227 + MER5C DNA MER1_type 244 324 0 183 333 35 23 chr3 29325420 29325444 -198199134 - MIR SINE MIR -111 151 129 216 97 0 0 chr3 29325444 29325475 -198199103 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 183 333 35 23 chr3 29325475 29325537 -198199041 - MIR SINE MIR -133 129 64 25 0 0 0 chr3 29325746 29325771 -198198807 + AT_rich Low_complexity Low_complexity 1 25 0 308 256 90 0 chr3 29325842 29325920 -198198658 - L2 LINE L2 -3 3269 3185 267 195 49 24 chr3 29327304 29327386 -198197192 + HsTC2 DNA Tc2 3 86 -1812 231 260 0 0 chr3 29327371 29327421 -198197157 + HsTC2 DNA Tc2 1849 1898 0 * 661 289 37 11 chr3 29327421 29327611 -198196967 - MIR SINE MIR -67 195 1 294 265 194 18 chr3 29327845 29328015 -198196563 - L1ME LINE L1 -303 5818 5619 335 263 197 26 chr3 29329465 29329520 -198195058 + MER5A DNA MER1_type 12 56 -133 14576 136 23 2 chr3 29329520 29331889 -198192689 + Tigger1 DNA MER2_type 1 2418 0 335 263 197 26 chr3 29331889 29331985 -198192593 + MER5A DNA MER1_type 56 189 0 31 0 0 0 chr3 29332571 29332602 -198191976 + AT_rich Low_complexity Low_complexity 1 31 0 189 209 15 75 chr3 29332677 29332744 -198191834 + MIR SINE MIR 83 145 -63 2413 230 80 85 chr3 29333761 29334159 -198190419 - MER63C DNA MER1_type -131 929 531 655 296 9 22 chr3 29334159 29334382 -198190196 + MER58A DNA MER1_type 4 223 -1 2413 230 80 85 chr3 29334382 29334986 -198189592 - MER63C DNA MER1_type -529 531 63 1297 198 41 16 chr3 29334990 29335018 -198189560 - MLT2D LTR ERVL -8 389 363 384 40 0 0 chr3 29335018 29335068 -198189510 + (TG)n Simple_repeat Simple_repeat 2 51 0 1297 198 41 16 chr3 29335068 29335397 -198189181 - MLT2D LTR ERVL -34 363 1 21 36 0 0 chr3 29336796 29336824 -198187754 + AT_rich Low_complexity Low_complexity 1 28 0 207 341 181 15 chr3 29337786 29337991 -198186587 - L2 LINE L2 -1367 1947 1709 1548 184 109 48 chr3 29339003 29339443 -198185135 - MLT1C LTR MaLR 0 467 1 2383 84 0 0 chr3 29339627 29339935 -198184643 + AluSx SINE Alu 1 308 -4 276 331 112 58 chr3 29340267 29340509 -198184069 + MIR SINE MIR 8 262 0 21 0 0 0 chr3 29340612 29340633 -198183945 + AT_rich Low_complexity Low_complexity 1 21 0 360 327 92 32 chr3 29340704 29340921 -198183657 + L2 LINE L2 3084 3313 0 25 0 0 0 chr3 29341945 29341970 -198182608 + AT_rich Low_complexity Low_complexity 1 25 0 338 293 102 32 chr3 29342161 29342318 -198182260 - MER112 DNA MER1_type -89 171 4 286 344 56 8 chr3 29342329 29342454 -198182124 + MIR SINE MIR 20 150 -112 22 35 0 0 chr3 29343634 29343663 -198180915 + AT_rich Low_complexity Low_complexity 1 29 0 2014 122 3 44 chr3 29344610 29344931 -198179647 - AluSx SINE Alu -4 308 1 244 368 13 0 chr3 29345696 29345772 -198178806 + LTR67 LTR ERVL 114 190 -367 297 320 30 0 chr3 29346508 29346608 -198177970 + ERVL LTR ERVL 4962 5064 -700 554 257 63 27 chr3 29348068 29348290 -198176288 - MLT1L LTR MaLR -221 394 165 957 231 0 44 chr3 29348330 29348559 -198176019 + MER20 DNA MER1_type 1 219 0 879 233 5 5 chr3 29348676 29348865 -198175713 - MER5A DNA MER1_type 0 189 1 187 286 43 14 chr3 29348896 29348966 -198175612 + MIR SINE MIR 71 142 -120 380 265 85 7 chr3 29349336 29349509 -198175069 + L1ME LINE L1 5317 5499 -622 344 264 47 0 chr3 29350164 29350270 -198174308 - MIR SINE MIR -65 197 87 271 291 284 0 chr3 29350350 29350491 -198174087 - MIR SINE MIR -2 260 80 420 70 0 0 chr3 29350499 29350556 -198174022 - Alu SINE Alu -243 68 12 404 241 112 0 chr3 29350829 29350945 -198173633 - MIR SINE MIR -34 228 100 269 271 18 118 chr3 29351617 29351787 -198172791 - MIR3 SINE MIR -18 190 38 924 32 0 48 chr3 29352026 29352150 -198172428 + L1PA3 LINE L1 6038 6155 0 522 241 38 8 chr3 29352831 29352964 -198171614 + L1ME1 LINE L1 6024 6160 -6 2238 109 0 3 chr3 29353313 29353617 -198170961 + AluSc SINE Alu 1 303 -6 304 313 10 10 chr3 29353823 29353919 -198170659 + MIR3 SINE MIR 92 187 -21 207 0 0 0 chr3 29354496 29354519 -198170059 + (A)n Simple_repeat Simple_repeat 1 23 0 256 280 154 16 chr3 29354881 29354980 -198169598 + LTR37B LTR ERV1 7 91 -377 198 0 0 0 chr3 29354980 29355002 -198169576 + (TA)n Simple_repeat Simple_repeat 2 23 0 256 280 154 16 chr3 29355002 29355084 -198169494 + LTR37B LTR ERV1 91 213 -255 230 241 17 0 chr3 29356797 29356855 -198167723 - L1M4 LINE L1 -433 5751 5693 501 32 0 0 chr3 29357409 29357472 -198167106 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 265 334 119 59 chr3 29357685 29358005 -198166573 - L2 LINE L2 0 3272 2934 207 0 0 0 chr3 29359375 29359398 -198165180 + (CA)n Simple_repeat Simple_repeat 2 24 0 398 316 47 7 chr3 29360701 29360851 -198163727 + MIR SINE MIR 35 189 -73 1002 266 136 16 chr3 29361288 29361664 -198162914 + MER110 LTR ERV1 71 491 0 223 274 20 0 chr3 29362736 29362787 -198161791 - L2 LINE L2 -4 3268 3217 209 213 0 0 chr3 29363661 29363708 -198160870 + T-rich Low_complexity Low_complexity 1 47 0 280 339 69 21 chr3 29366108 29366297 -198158281 - L1M4 LINE L1 -476 5645 5448 2004 131 0 0 chr3 29366440 29366730 -198157848 + AluSx SINE Alu 1 290 -22 246 62 0 0 chr3 29368466 29368498 -198156080 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 218 338 95 34 chr3 29368498 29368637 -198155941 - L2 LINE L2 -10 3262 3112 589 199 44 15 chr3 29368654 29368790 -198155788 + L1ME2 LINE L1 6024 6163 -1 334 225 108 33 chr3 29368858 29368978 -198155600 - MER103 DNA DNA -37 129 1 561 215 114 0 chr3 29369310 29369497 -198155081 + MER58C DNA MER1_type 1 215 0 247 274 89 32 chr3 29369769 29369893 -198154685 - L2 LINE L2 -1036 2278 2148 2382 49 3 30 chr3 29370229 29370534 -198154044 + AluY SINE Alu 6 302 -9 1584 204 13 30 chr3 29370971 29371368 -198153210 + L1 LINE L1 3331 3720 -2426 4877 173 51 10 chr3 29371368 29372330 -198152248 + L1PA16 LINE L1 4430 5488 -678 1817 37 0 0 chr3 29372330 29372548 -198152030 - L1PA5 LINE L1 -6 6148 5931 4877 173 51 10 chr3 29372548 29373253 -198151325 + L1PA16 LINE L1 5488 6163 -3 2412 244 84 22 chr3 29373421 29374233 -198150345 + L1MD1 LINE L1 3 999 -5541 2389 231 53 29 chr3 29374230 29375423 -198149155 + L1MD1 LINE L1 4815 6045 -708 * 3672 57 11 2 chr3 29375430 29375907 -198148671 - L1PA7 LINE L1 -1 6153 5673 2322 76 0 0 chr3 29375911 29376228 -198148350 + L1P LINE L1 4962 5278 -868 2132 189 40 17 chr3 29376228 29376631 -198147947 + MSTB1 LTR MaLR 19 430 -2 773 267 37 0 chr3 29376640 29376831 -198147747 + L1MD1 LINE L1 6023 6220 -416 852 286 97 0 chr3 29376862 29377232 -198147346 + L1MDa LINE L1 2611 3016 -3524 1013 252 52 0 chr3 29377232 29377482 -198147096 + AluJo SINE Alu 1 263 -49 827 140 19 0 chr3 29377495 29377740 -198146838 + GA-rich Low_complexity Low_complexity 1 249 0 373 268 10 0 chr3 29377745 29377842 -198146736 + L1MDa LINE L1 3007 3104 -3436 6116 263 38 6 chr3 29377849 29379790 -198144788 + L1MDa LINE L1 3593 5595 -945 2305 226 86 12 chr3 29379790 29381159 -198143419 + L1MB8 LINE L1 4650 6177 -1 2389 67 0 19 chr3 29381170 29381485 -198143093 + AluY SINE Alu 1 309 -2 318 346 39 6 chr3 29383118 29383274 -198141304 + MIR SINE MIR 102 262 0 477 293 144 0 chr3 29384593 29384781 -198139797 - MIR SINE MIR -5 257 43 376 219 45 71 chr3 29385824 29385979 -198138599 + L2 LINE L2 3115 3265 -48 24 77 0 0 chr3 29386871 29386923 -198137655 + AT_rich Low_complexity Low_complexity 1 52 0 302 250 42 90 chr3 29388495 29388639 -198135939 - MIR SINE MIR -1 261 125 347 267 43 26 chr3 29389619 29389735 -198134843 + MIR SINE MIR 94 211 -51 387 263 71 75 chr3 29389791 29390057 -198134521 - L2 LINE L2 -3 3310 3046 258 317 61 0 chr3 29390432 29390514 -198134064 + MIR SINE MIR 5 91 -171 2526 59 0 0 chr3 29390781 29391087 -198133491 - AluY SINE Alu -5 306 1 22 35 0 0 chr3 29391162 29391191 -198133387 + AT_rich Low_complexity Low_complexity 1 29 0 237 246 0 0 chr3 29392564 29392629 -198131949 + (TATATG)n Simple_repeat Simple_repeat 5 69 0 22 56 0 0 chr3 29393328 29393364 -198131214 + AT_rich Low_complexity Low_complexity 1 36 0 27 62 0 0 chr3 29394033 29394081 -198130497 + AT_rich Low_complexity Low_complexity 1 48 0 200 188 0 0 chr3 29394387 29394419 -198130159 + (TG)n Simple_repeat Simple_repeat 1 32 0 231 156 0 0 chr3 29394419 29394464 -198130114 - L1MC4 LINE L1 -1340 6702 6658 311 145 14 0 chr3 29394467 29394536 -198130042 + GA-rich Low_complexity Low_complexity 1 70 0 258 298 196 6 chr3 29394714 29394882 -198129696 + MIR SINE MIR 53 252 -10 395 297 36 72 chr3 29395787 29395840 -198128738 - L1ME4a LINE L1 -224 5897 5844 2044 141 0 6 chr3 29395840 29396152 -198128426 + AluSx SINE Alu 1 310 -2 395 297 36 72 chr3 29396152 29396404 -198128174 - L1ME4a LINE L1 -277 5844 5603 2002 110 4 4 chr3 29396637 29396940 -198127638 - AluSg SINE Alu 0 303 1 21 36 0 0 chr3 29397306 29397334 -198127244 + AT_rich Low_complexity Low_complexity 1 28 0 315 205 77 0 chr3 29398108 29398186 -198126392 - LTR68 LTR ERV1 -636 104 21 182 36 0 36 chr3 29398820 29398848 -198125730 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 8940 86 11 5 chr3 29398848 29400888 -198123690 - L1PA7 LINE L1 0 6154 4106 498 294 105 0 chr3 29401784 29401927 -198122651 + MIR SINE MIR 32 189 -73 218 284 15 0 chr3 29403463 29403530 -198121048 + MIR SINE MIR 99 166 -96 1989 231 53 27 chr3 29403768 29404293 -198120285 - MER119 DNA MER1_type -2 581 43 1380 222 3 7 chr3 29405194 29405548 -198119030 + AluJb SINE Alu 1 353 0 23 0 0 0 chr3 29405653 29405676 -198118902 + AT_rich Low_complexity Low_complexity 1 23 0 2417 101 5 41 chr3 29406199 29406567 -198118011 + THE1A LTR MaLR 1 355 0 2046 89 7 0 chr3 29406567 29406849 -198117729 + THE1A-int LTR MaLR 1 284 -1296 329 367 105 4 chr3 29407582 29407811 -198116767 + MIR SINE MIR 11 262 0 225 328 0 0 chr3 29409106 29409170 -198115408 + L2 LINE L2 3210 3273 -40 5320 153 28 56 chr3 29409170 29410509 -198114069 + L1MA5 LINE L1 4978 6300 0 22 0 0 0 chr3 29410659 29410681 -198113897 + AT_rich Low_complexity Low_complexity 1 22 0 676 388 57 25 chr3 29411105 29411812 -198112766 - L2 LINE L2 -337 2977 2249 229 308 0 13 chr3 29412118 29412196 -198112382 + MER103 DNA DNA 23 99 -67 273 57 0 0 chr3 29413703 29413738 -198110840 + (A)n Simple_repeat Simple_repeat 1 35 0 2385 88 0 7 chr3 29413756 29414064 -198110514 - AluSx SINE Alu -6 306 1 239 277 92 8 chr3 29414425 29414544 -198110034 + MIR SINE MIR 68 196 -66 345 275 11 11 chr3 29414585 29414676 -198109902 - L2 LINE L2 -8 3264 3174 1452 219 61 58 chr3 29414737 29415276 -198109302 + L1MC4 LINE L1 7502 8042 0 1838 138 0 68 chr3 29415857 29416182 -198108396 - AluSx SINE Alu -9 303 1 20238 169 41 17 chr3 29417075 29417795 -198106783 + L1MA3 LINE L1 13 715 -6850 207 0 0 0 chr3 29417795 29417818 -198106760 + (GGAGA)n Simple_repeat Simple_repeat 4 26 0 20238 169 41 17 chr3 29417818 29418505 -198106073 + L1MA3 LINE L1 715 1384 -6181 1639 151 127 6 chr3 29418505 29418837 -198105741 + THE1C LTR MaLR 1 372 -3 20238 169 41 17 chr3 29418837 29422439 -198102139 + L1MA3 LINE L1 1384 5150 -2415 287 219 122 12 chr3 29422989 29423071 -198101507 + MLT1H LTR MaLR 23 113 -436 2409 78 0 0 chr3 29423072 29423367 -198101211 - AluSx SINE Alu -17 295 1 1233 221 25 31 chr3 29424031 29424348 -198100230 - L1P LINE L1 -2491 3655 3341 2524 45 0 19 chr3 29424797 29425105 -198099473 - AluY SINE Alu -9 302 1 566 279 42 5 chr3 29425116 29425331 -198099247 - L1MB8 LINE L1 -1 6177 5955 5412 166 12 4 chr3 29425542 29426545 -198098033 - L1P LINE L1 -751 5395 4385 504 139 0 0 chr3 29426702 29426781 -198097797 + L1PA16 LINE L1 6085 6163 -3 2437 242 54 23 chr3 29426949 29427733 -198096845 + L1MDa LINE L1 3 971 -5569 285 274 9 57 chr3 29428813 29428919 -198095659 - MIR3 SINE MIR -18 190 90 667 108 0 54 chr3 29429232 29429343 -198095235 + L1PA3 LINE L1 6039 6143 -12 7479 150 21 11 chr3 29429525 29431864 -198092714 + L1MA3 LINE L1 5356 7715 -9 477 0 0 0 chr3 29431864 29431917 -198092661 + (TA)n Simple_repeat Simple_repeat 2 54 0 309 250 184 20 chr3 29432422 29432574 -198092004 + L1MDa LINE L1 1283 1459 -5081 1377 243 96 42 chr3 29432586 29432749 -198091829 + L1ME3A LINE L1 5651 5804 -366 1971 123 14 0 chr3 29432749 29433026 -198091552 + AluSg SINE Alu 1 281 -29 180 0 0 0 chr3 29433030 29433050 -198091528 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1377 243 96 42 chr3 29433050 29433362 -198091216 + L1ME3A LINE L1 5806 6157 -13 1353 198 6 58 chr3 29433574 29433902 -198090676 + AluJo SINE Alu 1 311 -1 192 398 41 0 chr3 29434256 29434354 -198090224 + L2 LINE L2 3160 3261 -11 295 345 26 9 chr3 29435405 29435518 -198089060 - MIR SINE MIR -62 146 32 2058 207 92 44 chr3 29435916 29436457 -198088121 + MLT1F1 LTR MaLR 1 567 0 263 105 263 0 chr3 29436543 29436600 -198087978 - MER116 DNA Mariner -6 74 3 8220 201 8 39 chr3 29436603 29439213 -198085365 - L1PA14 LINE L1 -4 6157 3603 243 0 0 0 chr3 29439213 29439240 -198085338 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 27625 30 17 1 chr3 29439241 29445251 -198079327 - L1PA2 LINE L1 -4 6151 4 195 380 19 19 chr3 29447867 29447975 -198076603 - L2 LINE L2 -16 3256 3149 607 272 110 11 chr3 29448004 29448195 -198076383 + MIR SINE MIR 26 235 -27 781 316 25 24 chr3 29448746 29449197 -198075381 - L1ME4a LINE L1 -254 5867 5409 516 293 69 35 chr3 29449931 29450276 -198074302 + MER90 LTR ERV1 211 665 -4 5825 236 22 156 chr3 29450398 29452661 -198071917 - L1M2 LINE L1 -4883 2326 1 3462 59 0 2 chr3 29453194 29453633 -198070945 + L1PA5 LINE L1 5717 6154 0 315 0 0 0 chr3 29453994 29454029 -198070549 + (TG)n Simple_repeat Simple_repeat 1 35 0 1016 222 168 61 chr3 29454063 29454504 -198070074 + MER41B LTR ERV1 114 601 -34 1036 239 59 42 chr3 29454538 29454944 -198069634 + Charlie4a DNA MER1_type 65 477 -31 183 220 0 0 chr3 29454953 29455003 -198069575 + (CA)n Simple_repeat Simple_repeat 2 51 0 186 353 84 0 chr3 29455673 29455792 -198068786 + MIR SINE MIR 29 157 -105 1500 182 14 62 chr3 29455812 29456145 -198068433 + L1MA4 LINE L1 1959 2274 -4575 2316 86 0 0 chr3 29456145 29456437 -198068141 + AluY SINE Alu 1 292 -19 1500 182 14 62 chr3 29456437 29456471 -198068107 + L1MA4 LINE L1 2274 2308 -4541 1944 62 0 23 chr3 29456471 29456727 -198067851 + MER41A LTR ERV1 218 467 -87 12929 190 36 30 chr3 29456732 29459707 -198064871 + L1MA4 LINE L1 2309 5314 -1534 1996 144 3 19 chr3 29459707 29460019 -198064559 + AluSq SINE Alu 1 307 -6 12929 190 36 30 chr3 29460019 29460681 -198063897 + L1MA4 LINE L1 5314 5970 -878 1881 128 22 22 chr3 29460681 29461150 -198063428 + MER4A LTR ERV1 55 660 -4 207 0 0 0 chr3 29461179 29461202 -198063376 + (A)n Simple_repeat Simple_repeat 1 23 0 1913 135 0 6 chr3 29461206 29461525 -198063053 + L1MA4 LINE L1 5996 6312 -693 1070 198 34 0 chr3 29461525 29461754 -198062824 + L1MA4 LINE L1 6752 6996 -6 211 194 0 0 chr3 29462078 29462114 -198062464 + CT-rich Low_complexity Low_complexity 2 37 0 260 313 78 12 chr3 29462798 29462964 -198061614 + L1MC/D LINE L1 11 187 -5932 1451 282 146 12 chr3 29463179 29463951 -198060627 - L1MC4a LINE L1 -1636 6172 5297 367 318 48 66 chr3 29463962 29464251 -198060327 - L1MC4a LINE L1 -960 5186 4903 328 322 35 28 chr3 29464271 29464414 -198060164 + L1MC/D LINE L1 309 452 -5667 2377 55 6 13 chr3 29464475 29464786 -198059792 - AluY SINE Alu -2 309 1 421 315 125 29 chr3 29464796 29465139 -198059439 + L1MC/D LINE L1 2771 3146 -2983 297 300 124 21 chr3 29465216 29465449 -198059129 + L1MC/D LINE L1 5541 5797 -1994 2283 102 0 0 chr3 29465470 29465774 -198058804 + AluY SINE Alu 1 304 -7 213 218 12 54 chr3 29466016 29466128 -198058450 + A-rich Low_complexity Low_complexity 1 107 0 396 263 77 62 chr3 29467801 29468010 -198056568 - MIR SINE MIR -49 213 2 23 33 0 0 chr3 29469101 29469131 -198055447 + AT_rich Low_complexity Low_complexity 1 30 0 866 236 37 23 chr3 29472279 29472495 -198052083 + MER20 DNA MER1_type 1 219 0 449 235 102 102 chr3 29472602 29472934 -198051644 + MLT1I LTR MaLR 71 402 -7 230 114 0 23 chr3 29473017 29473061 -198051517 + (TCTA)n Simple_repeat Simple_repeat 3 45 0 291 28 0 0 chr3 29473063 29473099 -198051479 + (CA)n Simple_repeat Simple_repeat 2 37 0 24 0 0 0 chr3 29473288 29473312 -198051266 + AT_rich Low_complexity Low_complexity 1 24 0 523 305 129 28 chr3 29473312 29473738 -198050840 - L1MDa LINE L1 -3634 2495 2068 356 294 169 13 chr3 29474029 29474302 -198050276 - L1MDa LINE L1 -4594 1535 1290 750 345 88 39 chr3 29474411 29475154 -198049424 - L1MDa LINE L1 -4959 1160 382 342 0 0 0 chr3 29475157 29475195 -198049383 + (T)n Simple_repeat Simple_repeat 1 38 0 482 211 32 49 chr3 29475868 29475991 -198048587 - MER45A DNA AcHobo 0 178 58 37 76 0 0 chr3 29476139 29476218 -198048360 + AT_rich Low_complexity Low_complexity 1 79 0 4293 146 44 5 chr3 29476610 29477390 -198047188 + L1PB4 LINE L1 5347 6156 0 453 291 209 11 chr3 29477596 29477778 -198046800 + MIR SINE MIR 36 253 -9 703 239 11 6 chr3 29477890 29478066 -198046512 - MER5B DNA MER1_type -1 177 1 439 308 69 65 chr3 29478152 29478399 -198046179 + MIR SINE MIR 14 261 -1 303 128 21 0 chr3 29480010 29480057 -198044521 - THE1C LTR MaLR 0 428 381 * 2762 78 28 74 chr3 29480056 29480515 -198044063 + MLT2A1 LTR ERVL 7 444 0 19225 71 15 53 chr3 29480515 29483266 -198041312 + HERVL-A1 LTR ERVL 1 2647 -3007 20497 77 25 13 chr3 29483266 29485046 -198039532 + HERVL-A1 LTR ERVL 2894 4751 -903 182 147 0 29 chr3 29485046 29485080 -198039498 + L2 LINE L2 1661 1693 -1621 20497 77 25 13 chr3 29485080 29485995 -198038583 + HERVL-A1 LTR ERVL 4751 5654 0 2690 96 61 28 chr3 29485995 29486383 -198038195 + MLT2A1 LTR ERVL 1 406 -38 450 0 0 0 chr3 29486383 29486433 -198038145 + (TA)n Simple_repeat Simple_repeat 2 51 0 2690 96 61 28 chr3 29486433 29486472 -198038106 + MLT2A1 LTR ERVL 406 442 -2 830 184 84 145 chr3 29486473 29486821 -198037757 - THE1C LTR MaLR -67 308 1 9210 137 15 37 chr3 29486821 29488402 -198036176 - THE1C-int LTR MaLR 0 1580 35 1283 183 32 39 chr3 29488408 29488692 -198035886 - THE1C LTR MaLR -93 282 1 706 296 23 8 chr3 29488889 29489146 -198035432 - MIR SINE MIR 0 262 2 1817 153 0 0 chr3 29489250 29489525 -198035053 + AluSx SINE Alu 1 275 -37 432 0 0 0 chr3 29489533 29489581 -198034997 + (TAA)n Simple_repeat Simple_repeat 2 49 0 397 272 19 10 chr3 29490018 29490121 -198034457 - MER81 DNA DNA 0 114 11 353 319 0 0 chr3 29490117 29490211 -198034367 - MER81 DNA DNA -20 94 1 * 1261 223 63 36 chr3 29490238 29490602 -198033976 + MLT1A2 LTR MaLR 1 374 0 7442 33 10 0 chr3 29492854 29493991 -198030587 - L1PA4 LINE L1 0 6155 5014 2182 27 0 0 chr3 29493991 29494250 -198030328 + L1PA4 LINE L1 4762 5020 -1126 479 309 144 10 chr3 29494459 29494660 -198029918 + MIR SINE MIR 31 258 -4 45 45 0 0 chr3 29495018 29495084 -198029494 + AT_rich Low_complexity Low_complexity 1 66 0 191 401 36 6 chr3 29495478 29495645 -198028933 + L2 LINE L2 2696 2867 -447 253 159 101 14 chr3 29495705 29495774 -198028804 + MER116 DNA Mariner 6 80 0 537 295 41 58 chr3 29495939 29496425 -198028153 + LTR33 LTR ERVL 5 521 0 485 298 45 11 chr3 29496428 29496606 -198027972 - MIR SINE MIR -48 214 31 264 323 112 12 chr3 29496824 29496985 -198027593 + L3 LINE CR1 645 821 -756 358 125 0 42 chr3 29497055 29497127 -198027451 - L1MB7 LINE L1 -19 6165 6097 234 129 57 100 chr3 29497207 29497277 -198027301 - MLT1K LTR MaLR -138 450 384 328 327 101 6 chr3 29497362 29497530 -198027048 - MLT1K LTR MaLR -318 270 87 771 353 52 29 chr3 29497624 29498109 -198026469 + L3 LINE CR1 836 1331 -246 493 284 132 15 chr3 29498290 29498494 -198026084 + MIR SINE MIR 35 262 0 378 248 97 35 chr3 29499708 29499821 -198024757 - L2 LINE L2 -12 3301 3182 561 296 99 32 chr3 29499824 29500138 -198024440 + MLT1E LTR MaLR 4 338 -255 325 297 68 61 chr3 29500142 29500290 -198024288 - L2 LINE L2 -1468 1846 1698 189 74 0 0 chr3 29500625 29500652 -198023926 + (CAAAAA)n Simple_repeat Simple_repeat 4 30 0 450 319 117 8 chr3 29500753 29501019 -198023559 - L2 LINE L2 -1667 1647 1353 466 127 0 0 chr3 29501140 29501211 -198023367 + AluSp/q SINE Alu 226 296 -17 300 145 16 0 chr3 29501211 29501273 -198023305 - L1 LINE L1 -1817 4329 4267 766 181 77 16 chr3 29501304 29501486 -198023092 - L1 LINE L1 -1010 5136 4944 7130 161 66 33 chr3 29503290 29505199 -198019379 - L1MA8 LINE L1 -2 6289 4269 2044 120 3 0 chr3 29505199 29505550 -198019028 + AluSq SINE Alu 1 352 0 7130 161 66 33 chr3 29505550 29506290 -198018288 - L1MA8 LINE L1 -2022 4269 3554 1373 226 14 0 chr3 29506293 29506568 -198018010 + AluJo SINE Alu 1 279 -33 231 61 0 0 chr3 29506568 29506601 -198017977 + (CAAA)n Simple_repeat Simple_repeat 1 33 0 797 179 62 6 chr3 29506641 29506820 -198017758 - L1MA8 LINE L1 -2585 3561 3373 23 33 0 0 chr3 29506969 29506999 -198017579 + AT_rich Low_complexity Low_complexity 1 30 0 335 271 31 39 chr3 29507452 29507581 -198016997 - MLT1H LTR MaLR -16 533 406 588 285 36 51 chr3 29507887 29508140 -198016438 + MIR SINE MIR 14 262 0 2090 126 0 13 chr3 29508275 29508576 -198016002 - AluSx SINE Alu -15 297 1 216 97 0 0 chr3 29508757 29508788 -198015790 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 23 0 0 0 chr3 29509374 29509397 -198015181 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 29509437 29509459 -198015119 + AT_rich Low_complexity Low_complexity 1 22 0 283 229 29 14 chr3 29510077 29510147 -198014431 - MER5B DNA MER1_type -104 74 4 275 296 0 0 chr3 29510224 29510312 -198014266 - Charlie2 DNA MER1_type -2599 263 176 282 238 79 30 chr3 29510338 29510439 -198014139 - Charlie2 DNA MER1_type -2672 110 5 411 179 107 54 chr3 29510441 29510521 -198014057 + L2 LINE L2 3196 3285 -28 2440 228 16 44 chr3 29510521 29511091 -198013487 + MLT2B3 LTR ERVL 1 554 0 411 179 107 54 chr3 29511091 29511122 -198013456 + L2 LINE L2 3285 3313 0 21 57 0 0 chr3 29511456 29511491 -198013087 + AT_rich Low_complexity Low_complexity 1 35 0 26 74 0 0 chr3 29511664 29511718 -198012860 + AT_rich Low_complexity Low_complexity 1 54 0 207 0 0 0 chr3 29511874 29511897 -198012681 + (TTAAA)n Simple_repeat Simple_repeat 4 26 0 507 324 109 19 chr3 29512077 29512389 -198012189 + L2 LINE L2 2521 2860 -454 753 234 16 113 chr3 29512429 29512749 -198011829 + L2 LINE L2 3021 3309 -4 1565 175 3 62 chr3 29512804 29513113 -198011465 - AluJb SINE Alu -21 291 1 1711 261 109 4 chr3 29513340 29513853 -198010725 + MLT1F1 LTR MaLR 1 567 0 378 324 43 7 chr3 29513904 29514043 -198010535 + MIR SINE MIR 82 225 -37 1496 273 33 9 chr3 29514370 29514798 -198009780 + LTR16A LTR ERVL 13 450 0 991 222 19 0 chr3 29514806 29515013 -198009565 - ERVL LTR ERVL -4789 975 765 2533 177 14 14 chr3 29515180 29515671 -198008907 + L1MA7 LINE L1 5629 6119 -172 358 339 40 24 chr3 29515736 29515860 -198008718 + MIR SINE MIR 1 126 -136 195 42 0 0 chr3 29517063 29517087 -198007491 + (TG)n Simple_repeat Simple_repeat 2 25 0 414 39 0 0 chr3 29517219 29517271 -198007307 + (TG)n Simple_repeat Simple_repeat 2 53 0 189 0 0 0 chr3 29517302 29517323 -198007255 + (TG)n Simple_repeat Simple_repeat 2 22 0 2000 110 36 0 chr3 29518483 29518764 -198005814 + AluSc SINE Alu 1 291 -18 369 185 0 65 chr3 29518771 29518863 -198005715 - MER3 DNA MER1_type 0 209 124 431 260 204 10 chr3 29519297 29519493 -198005085 + MLT2E LTR ERVL 393 626 -2 326 322 90 61 chr3 29519637 29520147 -198004431 - MLT1L LTR MaLR -87 528 4 374 267 34 23 chr3 29523370 29523546 -198001032 + GA-rich Low_complexity Low_complexity 3 180 0 223 356 52 22 chr3 29524310 29524445 -198000133 + MIR SINE MIR 50 188 -74 259 307 79 26 chr3 29525256 29525370 -197999208 + L2 LINE L2 1181 1300 -2014 183 179 232 36 chr3 29525630 29525686 -197998892 + MER5A DNA MER1_type 1 67 -122 183 206 0 0 chr3 29525702 29525736 -197998842 + MER5A DNA MER1_type 153 186 -3 410 309 34 23 chr3 29525750 29525925 -197998653 - MER5B DNA MER1_type 0 178 2 1183 330 119 28 chr3 29526080 29527449 -197997129 + L2 LINE L2 1805 3306 -7 26 0 0 0 chr3 29527831 29527857 -197996721 + AT_rich Low_complexity Low_complexity 1 26 0 28 0 0 0 chr3 29530111 29530139 -197994439 + AT_rich Low_complexity Low_complexity 1 28 0 225 226 0 0 chr3 29530632 29530685 -197993893 + (TATATG)n Simple_repeat Simple_repeat 2 54 0 35 24 0 0 chr3 29531317 29531359 -197993219 + AT_rich Low_complexity Low_complexity 1 42 0 1689 204 0 18 chr3 29531403 29531741 -197992837 + MLT1A1 LTR MaLR 2 333 -32 254 200 15 15 chr3 29532249 29532314 -197992264 + MLT1J2 LTR MaLR 15 79 -371 404 244 52 17 chr3 29532439 29532554 -197992024 + MER58B DNA MER1_type 222 340 -1 24 67 0 0 chr3 29532731 29532776 -197991802 + AT_rich Low_complexity Low_complexity 1 45 0 32651 85 12 9 chr3 29532823 29537375 -197987203 + L1PA5 LINE L1 11 4576 -1570 3561 57 11 0 chr3 29537376 29537830 -197986748 + L1PA5 LINE L1 5696 6154 0 1056 274 94 39 chr3 29538007 29538474 -197986104 + MLT1J LTR MaLR 3 495 -16 447 232 62 26 chr3 29540107 29540299 -197984279 + LTR41 LTR ERVL 101 353 -420 300 197 61 0 chr3 29540456 29540522 -197984056 + LTR41 LTR ERVL 601 670 -103 2038 125 0 13 chr3 29540574 29540877 -197983701 - AluSc SINE Alu -10 299 1 232 222 16 16 chr3 29540890 29540953 -197983625 + LTR41 LTR ERVL 703 765 -8 399 297 61 47 chr3 29541650 29541946 -197982632 + ERVL LTR ERVL 904 1203 -4561 597 314 96 28 chr3 29542119 29542473 -197982105 + ERVL LTR ERVL 1453 1830 -3824 679 285 86 8 chr3 29542866 29543122 -197981456 + LTR41 LTR ERVL 1 276 -497 407 226 95 78 chr3 29543248 29543491 -197981087 + LTR41 LTR ERVL 496 742 -31 22 56 0 0 chr3 29543679 29543715 -197980863 + AT_rich Low_complexity Low_complexity 1 36 0 41 82 0 0 chr3 29544079 29544176 -197980402 + AT_rich Low_complexity Low_complexity 1 97 0 335 181 9 69 chr3 29544437 29544553 -197980025 - HAL1b LINE L1 -535 813 705 326 324 128 0 chr3 29544562 29544741 -197979837 - L1ME3A LINE L1 -8 6162 5961 309 232 53 0 chr3 29544781 29544876 -197979702 - HAL1b LINE L1 -713 635 536 404 208 135 48 chr3 29544919 29545126 -197979452 - HAL1b LINE L1 -693 655 431 221 128 43 0 chr3 29545126 29545173 -197979405 + (TA)n Simple_repeat Simple_repeat 1 49 0 490 342 23 26 chr3 29545283 29545590 -197978988 - LTR16B LTR ERVL -122 342 37 323 298 58 42 chr3 29545645 29545672 -197978906 - HAL1b LINE L1 -969 379 354 1221 192 38 92 chr3 29545672 29545989 -197978589 - AluJo SINE Alu -2 300 1 323 298 58 42 chr3 29545989 29546152 -197978426 - HAL1b LINE L1 -994 354 186 35 54 0 0 chr3 29546545 29546601 -197977977 + AT_rich Low_complexity Low_complexity 1 56 0 924 162 60 0 chr3 29546920 29547087 -197977491 + L1PA16 LINE L1 5981 6157 -9 32 43 0 0 chr3 29547088 29547134 -197977444 + AT_rich Low_complexity Low_complexity 1 46 0 736 284 206 36 chr3 29547551 29548025 -197976553 + MLT1G1 LTR MaLR 1 592 -3 302 317 0 9 chr3 29548028 29548151 -197976427 + MLT1G1-int LTR MaLR 1 102 -1269 240 320 39 0 chr3 29548297 29548375 -197976203 + MLT1G1-int LTR MaLR 438 518 -853 790 285 75 60 chr3 29549411 29550040 -197974538 + L1ME4a LINE L1 5327 5964 -157 7500 24 1 1 chr3 29550717 29551652 -197972926 + L1PA3 LINE L1 5269 6203 0 359 319 52 37 chr3 29552623 29552758 -197971820 - MIR3 SINE MIR -70 138 2 585 329 70 4 chr3 29552968 29553211 -197971367 - MIR SINE MIR 0 262 4 26 0 0 0 chr3 29553727 29553753 -197970825 + AT_rich Low_complexity Low_complexity 1 26 0 367 322 66 25 chr3 29553990 29554111 -197970467 + L2 LINE L2 3133 3258 -14 25 0 0 0 chr3 29554671 29554696 -197969882 + AT_rich Low_complexity Low_complexity 1 25 0 275 125 107 0 chr3 29556106 29556162 -197968416 - L1MC4 LINE L1 -1366 6676 6615 183 156 0 0 chr3 29556163 29556195 -197968383 + (CATA)n Simple_repeat Simple_repeat 2 33 0 2131 194 78 13 chr3 29556196 29556644 -197967934 - MLT2B1 LTR ERVL -41 479 3 264 376 0 10 chr3 29556850 29556951 -197967627 - MER5B DNA MER1_type -78 100 1 277 305 53 0 chr3 29557015 29557110 -197967468 - MIR SINE MIR -48 214 115 2353 100 6 0 chr3 29557791 29558102 -197966476 - AluSp SINE Alu 0 313 1 944 232 67 14 chr3 29558616 29558944 -197965634 + MSTD LTR MaLR 5 396 0 434 316 33 52 chr3 29559352 29559510 -197965068 + MIR SINE MIR 52 207 -55 2084 141 3 0 chr3 29559510 29559807 -197964771 + AluSx SINE Alu 1 298 -14 434 316 33 52 chr3 29559807 29559860 -197964718 + MIR SINE MIR 207 259 -3 856 52 0 9 chr3 29560379 29560494 -197964084 - L1P LINE L1 -3602 2544 2431 7504 26 5 0 chr3 29560494 29561570 -197963008 + L1PA4 LINE L1 5078 6144 -11 366 235 139 53 chr3 29561703 29561890 -197962688 + L2 LINE L2 2272 2474 -840 369 169 60 24 chr3 29561895 29561978 -197962600 - L2 LINE L2 -47 3266 3181 2167 102 0 40 chr3 29562170 29562495 -197962083 - AluSx SINE Alu 0 312 1 1947 123 11 3 chr3 29563166 29563450 -197961128 - AluSx SINE Alu -26 286 1 712 196 21 28 chr3 29563450 29563593 -197960985 - AluJo SINE Alu -170 142 1 1189 165 5 14 chr3 29563612 29563830 -197960748 - AluJb SINE Alu -18 294 79 357 239 125 11 chr3 29564386 29564562 -197960016 + L1M4 LINE L1 4951 5146 -1000 2201 94 0 0 chr3 29564650 29564925 -197959653 + AluSx SINE Alu 21 295 -17 2250 110 3 3 chr3 29564939 29565248 -197959330 + AluSx SINE Alu 1 309 -3 1802 175 7 0 chr3 29565318 29565609 -197958969 + AluJb SINE Alu 1 293 -19 426 264 88 55 chr3 29566424 29566697 -197957881 - L1MEc LINE L1 -4179 2217 1936 2162 101 27 3 chr3 29566699 29566995 -197957583 - AluSc SINE Alu -6 303 1 1216 117 0 0 chr3 29566997 29567168 -197957410 - AluSg/x SINE Alu -5 307 137 1478 112 0 0 chr3 29567354 29567551 -197957027 - AluSg/x SINE Alu -23 289 93 183 80 0 0 chr3 29567551 29567576 -197957002 + (A)n Simple_repeat Simple_repeat 1 25 0 2093 123 0 13 chr3 29568403 29568713 -197955865 + AluSq SINE Alu 1 306 -7 873 298 84 29 chr3 29570042 29570233 -197954345 + MARNA DNA Mariner 14 193 -393 722 214 0 0 chr3 29570233 29570364 -197954214 - FLAM_A SINE Alu -2 131 1 873 298 84 29 chr3 29570364 29570695 -197953883 + MARNA DNA Mariner 193 565 -21 257 303 66 29 chr3 29571129 29571248 -197953330 - MIR SINE MIR -78 130 9 2376 89 3 0 chr3 29572803 29573105 -197951473 + AluSx SINE Alu 1 303 -9 11862 13 1 0 chr3 29574052 29575923 -197948655 - L1HS LINE L1 -277 5878 4006 344 191 34 62 chr3 29576031 29576209 -197948369 + (GGGTG)n Simple_repeat Simple_repeat 4 176 0 264 30 0 0 chr3 29576440 29576473 -197948105 + (T)n Simple_repeat Simple_repeat 1 33 0 256 222 144 22 chr3 29578256 29578346 -197946232 + MIR3 SINE MIR 55 155 -53 333 155 33 5 chr3 29579025 29579097 -197945481 + AluY SINE Alu 35 95 -206 1138 296 77 25 chr3 29579719 29580016 -197944562 - LTR16C LTR ERVL 0 491 168 1244 211 97 57 chr3 29580016 29580367 -197944211 + MLT1A1 LTR MaLR 1 365 0 1138 296 77 25 chr3 29580367 29580461 -197944117 - LTR16C LTR ERVL -323 168 80 23 33 0 0 chr3 29581432 29581462 -197943116 + AT_rich Low_complexity Low_complexity 1 30 0 423 340 96 2 chr3 29582171 29582373 -197942205 - MIR SINE MIR -17 245 23 23 105 0 0 chr3 29582860 29582946 -197941632 + AT_rich Low_complexity Low_complexity 1 86 0 235 315 0 0 chr3 29583740 29583794 -197940784 + MER91 DNA MER1_type 1 54 -86 1005 204 120 63 chr3 29585131 29585415 -197939163 - AluJo SINE Alu -1 301 2 1622 215 54 5 chr3 29585459 29585827 -197938751 - MLT1B LTR MaLR -4 386 1 215 360 33 67 chr3 29585853 29586003 -197938575 + MIR SINE MIR 31 175 -87 25 0 0 0 chr3 29586956 29586981 -197937597 + AT_rich Low_complexity Low_complexity 1 25 0 2851 176 62 0 chr3 29587023 29587571 -197937007 + LTR38B LTR ERV1 28 608 -3 880 294 69 62 chr3 29587775 29588411 -197936167 - L2 LINE L2 -22 3291 2657 180 200 0 0 chr3 29588457 29588497 -197936081 + GA-rich Low_complexity Low_complexity 3 42 0 264 122 0 41 chr3 29588608 29588657 -197935921 - L1MA2 LINE L1 0 6305 6259 7445 164 29 25 chr3 29588679 29588860 -197935718 - L1MA3 LINE L1 -23 7701 7522 1987 118 3 10 chr3 29588860 29589149 -197935429 + AluSq SINE Alu 1 287 -26 243 79 0 0 chr3 29589149 29589187 -197935391 + (CAAAC)n Simple_repeat Simple_repeat 2 39 0 7445 164 29 25 chr3 29589187 29589205 -197935373 - L1MA3 LINE L1 -202 7522 7506 369 0 0 0 chr3 29589205 29589246 -197935332 + (TC)n Simple_repeat Simple_repeat 2 42 0 243 0 0 0 chr3 29589245 29589272 -197935306 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 7445 164 29 25 chr3 29589246 29591554 -197933024 - L1MA3 LINE L1 -218 7506 5208 3304 202 53 20 chr3 29591556 29592634 -197931944 - L1MA3 LINE L1 -3071 4494 3383 645 219 7 13 chr3 29592949 29593104 -197931474 + MLT2D LTR ERVL 94 247 -167 249 170 21 0 chr3 29593108 29593155 -197931423 + MLT2D LTR ERVL 367 414 0 746 220 20 0 chr3 29595092 29595242 -197929336 + MER5A DNA MER1_type 37 189 0 452 238 210 0 chr3 29595483 29595626 -197928952 - MER5A DNA MER1_type -7 182 10 299 331 67 61 chr3 29596863 29597087 -197927491 + MIR SINE MIR 9 238 -24 670 347 92 9 chr3 29597127 29597473 -197927105 - MLT1K LTR MaLR -206 382 8 204 191 0 149 chr3 29598056 29598150 -197926428 - L2 LINE L2 -85 3228 3149 200 240 67 53 chr3 29599278 29599353 -197925225 + MIR SINE MIR 47 122 -140 287 77 0 0 chr3 29599374 29599413 -197925165 - MADE1 DNA Mariner 0 80 42 261 0 0 0 chr3 29599633 29599662 -197924916 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr3 29599949 29599970 -197924608 + AT_rich Low_complexity Low_complexity 1 21 0 1755 162 19 16 chr3 29600072 29600381 -197924197 - AluSx SINE Alu -2 310 1 1997 78 0 7 chr3 29601299 29601569 -197923009 + AluY SINE Alu 11 278 -33 396 0 0 0 chr3 29601569 29601613 -197922965 + (CA)n Simple_repeat Simple_repeat 1 44 0 435 326 87 9 chr3 29601700 29601930 -197922648 - LTR33 LTR ERVL -82 439 192 271 292 23 18 chr3 29602801 29602910 -197921668 + MIR SINE MIR 72 180 -66 762 244 80 36 chr3 29603950 29604224 -197920354 - L1MD2 LINE L1 -13 6346 6061 2030 209 91 56 chr3 29604257 29604904 -197919674 - L1MD2 LINE L1 -363 5996 5327 * 19061 32 17 0 chr3 29604895 29607928 -197916650 - L1PA5 LINE L1 0 6154 3064 18254 41 55 3 chr3 29607926 29610262 -197914316 + L1P LINE L1 331 2786 -3360 * 23 33 0 0 chr3 29610335 29610365 -197914213 + AT_rich Low_complexity Low_complexity 1 30 0 798 184 62 6 chr3 29610514 29610693 -197913885 + L1 LINE L1 3373 3561 -2585 231 61 0 0 chr3 29610733 29610766 -197913812 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1343 226 14 0 chr3 29610766 29611041 -197913537 - AluJo SINE Alu -33 279 1 2641 181 76 12 chr3 29611044 29611624 -197912954 + L1 LINE L1 3554 4170 -1976 2333 104 0 0 chr3 29612293 29612602 -197911976 - AluSc SINE Alu 0 309 1 2653 161 46 2 chr3 29612911 29613409 -197911169 + L1MC1 LINE L1 5814 6333 0 27 0 0 0 chr3 29614406 29614433 -197910145 + AT_rich Low_complexity Low_complexity 1 27 0 418 302 50 35 chr3 29614509 29614711 -197909867 + MIR SINE MIR 18 222 -40 2887 188 102 14 chr3 29615110 29615749 -197908829 + LTR28 LTR ERV1 1 695 -325 638 301 77 10 chr3 29617318 29617527 -197907051 - MIR SINE MIR -32 230 8 884 209 0 0 chr3 29617873 29618026 -197906552 - AluJb SINE Alu -15 297 145 222 330 22 11 chr3 29618263 29618354 -197906224 - L2 LINE L2 -9 3263 3172 23 0 0 0 chr3 29618785 29618808 -197905770 + AT_rich Low_complexity Low_complexity 1 23 0 2451 65 0 3 chr3 29619672 29619978 -197904600 + AluY SINE Alu 3 307 -4 3201 230 85 10 chr3 29620728 29621555 -197903023 + L1MC3 LINE L1 6890 7778 -7 253 227 0 40 chr3 29621579 29621654 -197902924 - MER50-int LTR ERV1 -6244 961 890 282 29 0 0 chr3 29622093 29622128 -197902450 + (CA)n Simple_repeat Simple_repeat 2 36 0 299 225 36 18 chr3 29623785 29623896 -197900682 + (TA)n Simple_repeat Simple_repeat 2 114 0 36 23 0 0 chr3 29623977 29624020 -197900558 + AT_rich Low_complexity Low_complexity 1 43 0 23 54 0 0 chr3 29625043 29625080 -197899498 + AT_rich Low_complexity Low_complexity 1 37 0 241 331 73 24 chr3 29625514 29625638 -197898940 - L2 LINE L2 -6 3307 3178 10942 37 4 4 chr3 29625659 29627780 -197896798 - L1PA4 LINE L1 -2 6153 4035 8851 44 2 0 chr3 29627780 29628909 -197895669 + L1PA4 LINE L1 2907 4037 -2109 975 261 78 99 chr3 29629365 29629490 -197895088 + MLT1E LTR MaLR 2 128 -465 2247 72 0 7 chr3 29629490 29629795 -197894783 + AluY SINE Alu 1 303 -8 975 261 78 99 chr3 29629795 29630274 -197894304 + MLT1E LTR MaLR 128 593 0 368 289 109 0 chr3 29630512 29630640 -197893938 - MER117 DNA MER1_type -50 147 6 442 292 35 55 chr3 29631086 29631288 -197893290 + L3b LINE CR1 1191 1388 -195 1948 73 0 35 chr3 29631432 29631691 -197892887 - AluSg SINE Alu -20 290 41 332 242 88 0 chr3 29632198 29632308 -197892270 + MIR3 SINE MIR 61 180 -28 1752 122 90 4 chr3 29632619 29632898 -197891680 + AluSq SINE Alu 1 303 -10 22 35 0 0 chr3 29633004 29633033 -197891545 + AT_rich Low_complexity Low_complexity 1 29 0 2150 104 10 0 chr3 29633549 29633837 -197890741 - AluSg SINE Alu -15 295 5 540 173 245 7 chr3 29634995 29635134 -197889444 - MIR SINE MIR -67 195 24 189 74 0 0 chr3 29635553 29635580 -197888998 + (CA)n Simple_repeat Simple_repeat 2 28 0 26 64 0 0 chr3 29635738 29635785 -197888793 + AT_rich Low_complexity Low_complexity 1 47 0 394 162 120 68 chr3 29635955 29636072 -197888506 + MLT1D LTR MaLR 1 123 -382 2336 75 0 3 chr3 29636530 29636825 -197887753 - AluY SINE Alu -17 294 1 630 223 63 23 chr3 29637272 29637447 -197887131 + MER105 DNA DNA 6 187 -17 21 0 0 0 chr3 29639148 29639169 -197885409 + AT_rich Low_complexity Low_complexity 1 21 0 2195 94 14 0 chr3 29639284 29639581 -197884997 + AluSp SINE Alu 1 301 -12 1075 216 34 41 chr3 29640419 29640823 -197883755 + MLT1F LTR MaLR 6 499 -68 277 228 35 0 chr3 29640825 29640882 -197883696 + MER34 LTR ERV1 484 542 0 275 288 115 0 chr3 29641559 29641698 -197882880 + MER103 DNA DNA 12 166 0 342 318 108 58 chr3 29641751 29642151 -197882427 - L1MC/D LINE L1 -2045 5763 5344 27 0 0 0 chr3 29642264 29642291 -197882287 + AT_rich Low_complexity Low_complexity 1 27 0 2089 239 72 61 chr3 29642604 29643412 -197881166 - L1ME1 LINE L1 -26 6376 5560 445 221 54 20 chr3 29643505 29643654 -197880924 - L1ME1 LINE L1 -997 5385 5232 3247 97 11 0 chr3 29643801 29644263 -197880315 + L1PA13 LINE L1 5696 6162 -1 234 277 69 0 chr3 29644331 29644461 -197880117 - L1ME1 LINE L1 -3795 2587 2449 523 310 133 18 chr3 29644496 29645282 -197879296 - L1ME1 LINE L1 -4153 2410 1374 266 311 88 39 chr3 29645257 29645563 -197879015 - L1ME1 LINE L1 -4862 1510 1190 * 504 269 169 15 chr3 29647997 29648198 -197876380 - MIR SINE MIR -19 243 12 8090 79 5 3 chr3 29648299 29649368 -197875210 - MER11C LTR ERVK 0 1071 1 195 42 0 0 chr3 29649875 29649899 -197874679 + (TA)n Simple_repeat Simple_repeat 1 24 0 26 0 0 0 chr3 29650189 29650215 -197874363 + AT_rich Low_complexity Low_complexity 1 26 0 20005 174 42 17 chr3 29650541 29655273 -197869305 + L1MA3 LINE L1 1 4851 -2714 5468 156 43 24 chr3 29655285 29656792 -197867786 + L1MA3 LINE L1 6190 7724 0 29 0 0 0 chr3 29656792 29656821 -197867757 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr3 29659266 29659295 -197865283 + AT_rich Low_complexity Low_complexity 1 29 0 181 239 0 22 chr3 29659298 29659344 -197865234 + L2 LINE L2 3269 3313 0 25 31 0 0 chr3 29660801 29660833 -197863745 + AT_rich Low_complexity Low_complexity 1 32 0 693 222 69 35 chr3 29661277 29661480 -197863098 - MER58C DNA MER1_type -1 214 5 7438 93 7 19 chr3 29662126 29663196 -197861382 + MER11C LTR ERVK 1 1057 -14 5179 107 7 17 chr3 29663257 29664031 -197860547 + MER11C LTR ERVK 292 1057 -14 21 57 0 0 chr3 29664336 29664371 -197860207 + AT_rich Low_complexity Low_complexity 1 35 0 822 277 141 15 chr3 29664753 29665143 -197859435 + MLT1J1 LTR MaLR 1 439 -7 929 243 40 16 chr3 29665282 29665529 -197859049 + MER74B LTR ERVL 370 622 0 750 218 21 0 chr3 29665529 29665670 -197858908 - MLT1C LTR MaLR -323 144 1 527 303 168 8 chr3 29666132 29666489 -197858089 - L1M4 LINE L1 -1453 4693 4280 229 151 38 0 chr3 29666524 29666577 -197858001 + L1MC4 LINE L1 6648 6702 -1340 237 322 35 9 chr3 29666960 29667075 -197857503 - L1MC/D LINE L1 -1921 5887 5770 1110 274 40 3 chr3 29667645 29667970 -197856608 - MER46C DNA MER2_type -1 337 1 1598 191 3 28 chr3 29668125 29668444 -197856134 - AluJo SINE Alu 0 312 2 203 152 0 0 chr3 29669182 29669215 -197855363 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 281 339 8 0 chr3 29669196 29669317 -197855261 + (TA)n Simple_repeat Simple_repeat 1 122 0 374 174 122 20 chr3 29669410 29669508 -197855070 - L1MC5 LINE L1 -109 7852 7745 1904 129 46 0 chr3 29670060 29670340 -197854238 - AluSx SINE Alu -19 293 1 425 259 69 23 chr3 29670671 29670802 -197853776 + MIR SINE MIR 76 212 -50 407 300 67 44 chr3 29671442 29671622 -197852956 + MIR SINE MIR 9 192 -70 184 316 13 0 chr3 29671675 29671751 -197852827 - MIR SINE MIR 0 262 186 340 266 56 63 chr3 29671944 29672087 -197852491 + L2 LINE L2 3159 3300 -13 1359 231 26 102 chr3 29673316 29673844 -197850734 + LTR16C LTR ERVL 1 488 -3 16451 193 60 22 chr3 29674274 29674437 -197850141 - L1M1 LINE L1 -3994 3571 3416 2315 119 0 0 chr3 29674437 29674749 -197849829 - AluSx SINE Alu 0 312 1 16451 193 60 22 chr3 29674749 29678014 -197846564 - L1M1 LINE L1 -4149 3416 11 225 326 44 37 chr3 29678030 29678165 -197846413 - L2 LINE L2 -995 2319 2184 2278 294 159 25 chr3 29678187 29679213 -197845365 - L2 LINE L2 -1096 2218 1029 1514 237 46 3 chr3 29679213 29679563 -197845015 + MLT1A1 LTR MaLR 1 365 0 2278 294 159 25 chr3 29679563 29679652 -197844926 - L2 LINE L2 -2285 1029 953 219 319 0 0 chr3 29680098 29680167 -197844411 + MIR3 SINE MIR 137 205 -3 219 309 0 0 chr3 29680495 29680550 -197844028 + GA-rich Low_complexity Low_complexity 1 55 0 26 0 0 0 chr3 29680691 29680717 -197843861 + AT_rich Low_complexity Low_complexity 1 26 0 443 294 0 0 chr3 29680742 29680868 -197843710 + L1MD2 LINE L1 56 181 -6359 1276 253 119 6 chr3 29681089 29681732 -197842846 + L1MD2 LINE L1 2423 3145 -3395 1122 239 34 34 chr3 29681734 29682075 -197842503 - MSTD LTR MaLR 0 396 29 226 273 9 18 chr3 29682088 29682198 -197842380 + L1MD2 LINE L1 3144 3252 -3288 2066 285 56 29 chr3 29682203 29683211 -197841367 + L1MD2 LINE L1 4487 5537 -1003 1961 141 3 17 chr3 29683211 29683509 -197841069 + AluSx SINE Alu 1 294 -18 2066 285 56 29 chr3 29683509 29683758 -197840820 + L1MD2 LINE L1 5537 5778 -762 2386 170 29 0 chr3 29683759 29684201 -197840377 + L1MC2 LINE L1 5707 6161 -183 280 219 73 0 chr3 29684225 29684307 -197840271 + L1MC2 LINE L1 6246 6333 -11 * 15317 35 20 0 chr3 29684305 29686888 -197837690 + L1PA5 LINE L1 3514 6154 0 1989 210 91 47 chr3 29686932 29687526 -197837052 + L1MD2 LINE L1 5771 6390 -246 745 244 80 36 chr3 29687559 29687833 -197836745 + L1MD2 LINE L1 6455 6740 -13 268 265 32 28 chr3 29688872 29688981 -197835597 - MIR SINE MIR -66 142 72 441 326 87 9 chr3 29689852 29690082 -197834496 + LTR33 LTR ERVL 192 439 -82 396 0 0 0 chr3 29690169 29690213 -197834365 + (TG)n Simple_repeat Simple_repeat 1 44 0 2037 78 0 7 chr3 29690213 29690483 -197834095 - AluY SINE Alu -33 278 11 1779 162 19 16 chr3 29691401 29691710 -197832868 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr3 29691812 29691833 -197832745 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr3 29692120 29692149 -197832429 + (TG)n Simple_repeat Simple_repeat 2 30 0 286 77 0 0 chr3 29692369 29692408 -197832170 + MADE1 DNA Mariner 42 80 0 200 240 67 53 chr3 29692429 29692504 -197832074 - MIR SINE MIR -140 122 47 199 191 0 149 chr3 29693632 29693726 -197830852 + L2 LINE L2 3149 3228 -85 678 347 92 9 chr3 29694309 29694655 -197829923 + MLT1K LTR MaLR 8 382 -206 297 331 67 61 chr3 29694695 29694919 -197829659 - MIR SINE MIR -24 238 9 461 238 210 0 chr3 29696156 29696299 -197828279 + MER5A DNA MER1_type 10 182 -7 746 220 20 0 chr3 29696540 29696690 -197827888 - MER5A DNA MER1_type 0 189 37 249 170 21 0 chr3 29698627 29698674 -197825904 - MLT2D LTR ERVL 0 414 367 967 202 79 9 chr3 29698678 29698906 -197825672 - MLT2D LTR ERVL -167 247 4 2080 143 14 6 chr3 29698962 29699318 -197825260 - L1PA13 LINE L1 -5 6158 5800 2485 191 39 4 chr3 29699461 29699949 -197824629 - MLT1D LTR MaLR 0 505 1 337 321 28 0 chr3 29700011 29700120 -197824458 - MER63A DNA MER1_type 0 210 99 585 208 13 82 chr3 29700492 29700567 -197824011 + MER45A DNA AcHobo 28 88 -1493 1963 125 7 0 chr3 29700567 29700847 -197823731 - AluSx SINE Alu -5 307 26 585 208 13 82 chr3 29700847 29700930 -197823648 + MER45A DNA AcHobo 88 175 -3 570 147 0 0 chr3 29702210 29702312 -197822266 + L1MA4 LINE L1 6197 6298 -2 540 368 36 4 chr3 29704205 29704455 -197820123 + MIR SINE MIR 5 262 0 240 35 0 0 chr3 29705773 29705802 -197818776 + (CA)n Simple_repeat Simple_repeat 2 30 0 205 265 20 0 chr3 29705980 29706029 -197818549 + MIR SINE MIR 56 105 -157 1254 145 185 65 chr3 29707016 29707341 -197817237 + THE1B LTR MaLR 1 364 0 22 56 0 0 chr3 29707505 29707541 -197817037 + AT_rich Low_complexity Low_complexity 1 36 0 243 358 67 8 chr3 29709055 29709175 -197815403 + MIR SINE MIR 94 220 -42 1396 188 58 136 chr3 29709317 29709958 -197814620 + LTR49 LTR ERV1 1 584 -11 691 272 103 13 chr3 29709982 29710298 -197814280 - LTR16A LTR ERVL 0 491 105 954 120 0 0 chr3 29710719 29710852 -197813726 + AluSq/x SINE Alu 2 134 -179 2286 98 3 0 chr3 29710853 29711150 -197813428 + AluSg SINE Alu 2 299 -11 1000 200 73 23 chr3 29711151 29711411 -197813167 + L1MB7 LINE L1 5902 6174 -10 1608 181 45 0 chr3 29711427 29711715 -197812863 + AluSx SINE Alu 2 302 -10 395 156 92 0 chr3 29712049 29712158 -197812420 + AluJo SINE Alu 15 133 -169 2105 108 13 10 chr3 29712213 29712519 -197812059 + AluSg1 SINE Alu 1 307 -2 1148 121 0 17 chr3 29712528 29712702 -197811876 + AluJo SINE Alu 130 300 -12 2334 78 0 3 chr3 29712851 29713145 -197811433 + AluSg1 SINE Alu 1 293 -16 2215 60 46 23 chr3 29713147 29713449 -197811129 + AluY SINE Alu 1 309 -2 384 265 94 0 chr3 29715701 29715818 -197808760 + MER5A DNA MER1_type 9 136 -53 1823 199 50 11 chr3 29715917 29716279 -197808299 + MER21A LTR ERV1 26 401 -530 2492 176 25 8 chr3 29716279 29716757 -197807821 + MER66B LTR ERV1 1 486 0 2336 231 91 9 chr3 29716762 29717313 -197807265 + MER66B-int LTR ERV1 8 603 -6073 2131 168 40 33 chr3 29717313 29717860 -197806718 + MLT2A2 LTR ERVL 1 554 0 1970 177 141 11 chr3 29717860 29718300 -197806278 + MER66B-int LTR ERV1 599 1095 -5581 734 269 6 0 chr3 29718398 29718554 -197806024 + MER66-int LTR ERV1 2946 3102 -3574 4825 189 57 16 chr3 29718649 29719570 -197805008 + MER66-int LTR ERV1 1212 2169 -4507 4277 212 26 21 chr3 29719558 29720417 -197804161 + MER66-int LTR ERV1 2336 3198 -3478 * 2435 147 50 5 chr3 29720437 29720839 -197803739 + MSTA LTR MaLR 1 420 -8 2962 68 12 10 chr3 29721100 29721500 -197803078 - L1PA7 LINE L1 0 6154 5754 1068 228 61 29 chr3 29721951 29722293 -197802285 + L1ME2 LINE L1 5803 6155 -9 197 314 0 0 chr3 29722364 29722415 -197802163 + L2 LINE L2 1851 1901 -1413 254 358 28 0 chr3 29724446 29724555 -197800023 + L1MC/D LINE L1 5465 5576 -2232 21 0 0 0 chr3 29724555 29724576 -197800002 + AT_rich Low_complexity Low_complexity 1 21 0 377 259 68 41 chr3 29724631 29724778 -197799800 + L1MC/D LINE L1 5589 5739 -382 215 225 14 0 chr3 29724904 29724975 -197799603 + (TA)n Simple_repeat Simple_repeat 2 73 0 766 248 0 0 chr3 29725050 29725203 -197799375 - FRAM SINE Alu -16 160 8 4060 205 61 18 chr3 29725265 29726366 -197798212 - L1MB7 LINE L1 -18 6166 4964 1969 132 0 3 chr3 29726366 29726653 -197797925 - AluSc SINE Alu -21 288 3 4060 205 61 18 chr3 29726653 29727399 -197797179 - L1MB7 LINE L1 -1220 4964 4252 1290 201 19 87 chr3 29727456 29727765 -197796813 - AluJo SINE Alu -22 290 3 865 273 18 0 chr3 29727888 29728108 -197796470 + MER58A DNA MER1_type 1 224 0 21 57 0 0 chr3 29728357 29728392 -197796186 + AT_rich Low_complexity Low_complexity 1 35 0 1952 151 3 19 chr3 29728610 29728921 -197795657 + AluJb SINE Alu 3 308 -4 2241 37 0 0 chr3 29730684 29730956 -197793622 + L1PA2 LINE L1 5884 6155 0 1918 215 56 16 chr3 29731081 29731565 -197793013 + L1MD3 LINE L1 7425 7927 -68 1381 195 41 11 chr3 29731628 29732080 -197792498 + L1M4 LINE L1 5016 5482 -702 310 333 184 19 chr3 29732199 29732629 -197791949 - L2 LINE L2 -556 2758 2258 216 0 0 0 chr3 29733082 29733106 -197791472 + (A)n Simple_repeat Simple_repeat 1 24 0 1678 109 97 12 chr3 29736449 29736744 -197787834 - AluSc SINE Alu 0 317 1 364 280 30 38 chr3 29737173 29737305 -197787273 - L2 LINE L2 -1 3271 3141 313 294 63 8 chr3 29737404 29737530 -197787048 + MIR SINE MIR 32 164 -98 826 262 105 94 chr3 29737537 29738110 -197786468 + MLT1G LTR MaLR 10 588 -2 654 226 67 12 chr3 29739401 29739565 -197785013 - MER45A DNA AcHobo -5 173 1 769 155 139 48 chr3 29740366 29740553 -197784025 - MER20 DNA MER1_type 0 219 16 575 331 40 16 chr3 29740603 29740854 -197783724 + MIR SINE MIR 1 257 -5 246 315 0 0 chr3 29741384 29741457 -197783121 - MIR SINE MIR -6 256 184 21 0 0 0 chr3 29743158 29743179 -197781399 + AT_rich Low_complexity Low_complexity 1 21 0 1092 101 132 0 chr3 29743393 29743582 -197780996 - MER44D DNA MER2_type 0 605 337 368 59 59 0 chr3 29743635 29743686 -197780892 + Tigger7 DNA MER2_type 278 331 -2156 1213 220 11 34 chr3 29743719 29743987 -197780591 - Tigger7 DNA MER2_type -2224 263 2 228 67 0 0 chr3 29744016 29744046 -197780532 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 2386 148 11 44 chr3 29744670 29745129 -197779449 + MLT2A1 LTR ERVL 1 444 0 4263 213 108 31 chr3 29747432 29748740 -197775838 - Charlie1a DNA MER1_type 0 1455 48 2319 65 0 28 chr3 29749037 29749358 -197775220 + L1PA8 LINE L1 5858 6169 -3 258 32 0 0 chr3 29749922 29749953 -197774625 + (TCCA)n Simple_repeat Simple_repeat 3 33 0 927 278 92 41 chr3 29750335 29750824 -197773754 + LTR33 LTR ERVL 6 519 -2 26 30 0 0 chr3 29750862 29750895 -197773683 + AT_rich Low_complexity Low_complexity 1 33 0 242 204 31 122 chr3 29751493 29751591 -197772987 + MIR SINE MIR 100 188 -74 631 320 57 16 chr3 29751670 29752042 -197772536 + L2 LINE L2 2365 2751 -563 998 311 87 28 chr3 29752078 29752503 -197772075 + L2 LINE L2 2864 3313 0 920 195 33 14 chr3 29752540 29752755 -197771823 + MER20 DNA MER1_type 1 219 0 182 207 0 103 chr3 29753521 29753579 -197770999 + L2 LINE L2 3262 3313 0 576 285 111 19 chr3 29753839 29754109 -197770469 - L2 LINE L2 -5 3308 3014 404 352 93 30 chr3 29754558 29754794 -197769784 - MIR SINE MIR -6 256 6 21 36 0 0 chr3 29757233 29757261 -197767317 + AT_rich Low_complexity Low_complexity 1 28 0 632 281 99 5 chr3 29757261 29757453 -197767125 - MER58A DNA MER1_type -1 223 14 510 310 83 14 chr3 29757596 29757812 -197766766 + MIR SINE MIR 31 261 -1 198 103 0 0 chr3 29757900 29757929 -197766649 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 205 365 111 0 chr3 29757946 29758072 -197766506 + L2 LINE L2 3132 3271 -1 209 262 33 0 chr3 29759916 29759977 -197764601 + (TTCA)n Simple_repeat Simple_repeat 3 65 0 258 363 66 25 chr3 29760306 29760583 -197763995 + L2 LINE L2 2757 3050 -222 1627 243 133 0 chr3 29760660 29761059 -197763519 + Tigger5 DNA MER2_type 1 452 -1871 292 191 95 0 chr3 29761063 29761126 -197763452 + Tigger5 DNA MER2_type 2240 2308 -15 230 254 0 16 chr3 29761866 29761929 -197762649 + A-rich Low_complexity Low_complexity 2 63 0 669 255 98 25 chr3 29762192 29762396 -197762182 + MER20 DNA MER1_type 1 219 0 744 169 174 23 chr3 29762407 29762626 -197761952 - LTR37A LTR ERV1 0 426 175 2214 112 0 0 chr3 29764601 29764896 -197759682 + AluSx SINE Alu 5 299 -13 29 47 0 0 chr3 29764943 29764986 -197759592 + AT_rich Low_complexity Low_complexity 1 43 0 316 350 88 81 chr3 29766376 29766696 -197757882 - L2 LINE L2 -56 3216 2895 181 336 62 76 chr3 29766751 29766962 -197757616 + L2 LINE L2 3020 3227 -45 2497 125 0 0 chr3 29767909 29768276 -197756302 - L1PB1 LINE L1 -3 6148 5782 1014 157 0 0 chr3 29768298 29768476 -197756102 + (TA)n Simple_repeat Simple_repeat 2 179 0 11097 188 33 10 chr3 29768509 29771554 -197753024 - L1PB1 LINE L1 -363 5788 2682 3093 132 91 1 chr3 29771553 29772249 -197752329 + L1PB1 LINE L1 2656 3415 -3447 * 657 306 34 17 chr3 29772402 29772637 -197751941 + MIR SINE MIR 22 260 -2 2097 114 13 7 chr3 29773031 29773337 -197751241 - AluY SINE Alu 0 311 4 1462 67 0 0 chr3 29774385 29774578 -197750000 - L1PA4 LINE L1 -3 6152 5960 23 33 0 0 chr3 29775041 29775071 -197749507 + AT_rich Low_complexity Low_complexity 1 30 0 6698 268 57 15 chr3 29775143 29779065 -197745513 - L1 LINE L1 -2889 3843 2 226 250 113 24 chr3 29779568 29779692 -197744886 - L1M3d LINE L1 -5753 138 4 694 251 5 21 chr3 29779802 29779993 -197744585 - MLT1A2 LTR MaLR -183 191 4 22 0 0 0 chr3 29780239 29780261 -197744317 + AT_rich Low_complexity Low_complexity 1 22 0 352 332 48 24 chr3 29780606 29780814 -197743764 - L1M4 LINE L1 -2301 3845 3633 666 202 42 72 chr3 29782554 29782747 -197741831 + MER5A DNA MER1_type 3 189 0 272 366 31 26 chr3 29783453 29783644 -197740934 + MIR SINE MIR 23 214 -48 22 35 0 0 chr3 29784595 29784624 -197739954 + AT_rich Low_complexity Low_complexity 1 29 0 437 188 10 59 chr3 29784859 29784960 -197739618 - Zaphod DNA AcHobo -2 4029 3934 521 269 50 19 chr3 29785019 29785179 -197739399 - MLT1G1 LTR MaLR -2 593 429 355 278 35 77 chr3 29785259 29785428 -197739150 - LTR16B LTR ERVL -12 452 291 1068 189 95 10 chr3 29835943 29836253 -197688325 - MER33 DNA MER1_type 0 324 1 368 299 132 36 chr3 29836662 29836996 -197687582 - L1M4 LINE L1 -1456 4690 4325 296 265 120 0 chr3 29837198 29837315 -197687263 + MLT1J LTR MaLR 7 137 -374 330 261 32 96 chr3 29837582 29837739 -197686839 - L1MEd LINE L1 -5956 163 17 2200 118 7 0 chr3 29837872 29838176 -197686402 - AluSq SINE Alu -5 308 3 5353 152 40 13 chr3 29838551 29839583 -197684995 + L1MA8 LINE L1 5226 6285 -6 546 370 20 24 chr3 29839835 29840292 -197684286 - L1ME3A LINE L1 -208 5962 5508 2123 114 3 0 chr3 29840476 29840766 -197683812 + AluSc SINE Alu 1 291 -18 2670 16 0 7 chr3 29840787 29841091 -197683487 + AluY SINE Alu 1 302 -9 251 272 37 0 chr3 29841269 29841350 -197683228 - HAL1b LINE L1 -817 531 448 319 365 14 7 chr3 29841360 29841505 -197683073 - HAL1 LINE L1 -998 1509 1364 1275 182 83 10 chr3 29841677 29841979 -197682599 - MER33 DNA MER1_type 0 324 1 23 0 0 0 chr3 29842450 29842473 -197682105 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr3 29842667 29842693 -197681885 + (A)n Simple_repeat Simple_repeat 1 26 0 1877 158 0 7 chr3 29843006 29843309 -197681269 + AluSx SINE Alu 1 301 -11 368 306 56 35 chr3 29844609 29844753 -197679825 - L2 LINE L2 -25 3288 3142 1055 236 122 46 chr3 29844811 29845205 -197679373 + LTR16A LTR ERVL 25 448 -2 388 360 63 13 chr3 29845540 29845779 -197678799 - MIR SINE MIR -1 261 11 21 36 0 0 chr3 29845824 29845852 -197678726 + AT_rich Low_complexity Low_complexity 1 28 0 286 400 17 22 chr3 29847172 29847352 -197677226 - MER115 DNA AcHobo -498 195 17 216 158 0 0 chr3 29848134 29848172 -197676406 + (TG)n Simple_repeat Simple_repeat 2 39 0 403 182 48 0 chr3 29848186 29848351 -197676227 + (TA)n Simple_repeat Simple_repeat 1 173 0 4751 143 54 23 chr3 29849274 29850201 -197674377 + L1 LINE L1 4167 5122 -1024 1405 176 96 53 chr3 29850379 29850553 -197674025 + MLT1B LTR MaLR 1 166 -224 1861 118 9 60 chr3 29850553 29850868 -197673710 + AluSp SINE Alu 1 299 -14 222 37 0 0 chr3 29850868 29850895 -197673683 + (GGGA)n Simple_repeat Simple_repeat 4 30 0 1405 176 96 53 chr3 29850895 29851093 -197673485 + MLT1B LTR MaLR 165 390 0 259 292 125 25 chr3 29851280 29851400 -197673178 + L2 LINE L2 3139 3270 -2 295 329 67 18 chr3 29853076 29853240 -197671338 - MIR SINE MIR -89 173 2 369 85 0 0 chr3 29853267 29853326 -197671252 + L1MD2 LINE L1 6300 6358 -1 1358 272 160 19 chr3 29855743 29856332 -197668246 + L2 LINE L2 535 1206 -2108 483 260 81 108 chr3 29856349 29856572 -197668006 + MIR SINE MIR 46 262 0 203 205 77 0 chr3 29856702 29856780 -197667798 + (TTAAA)n Simple_repeat Simple_repeat 2 85 0 766 204 0 25 chr3 29857023 29857180 -197667398 - MER3 DNA MER1_type -56 153 1 21 36 0 0 chr3 29857189 29857217 -197667361 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 29857822 29857850 -197666728 + AT_rich Low_complexity Low_complexity 1 28 0 1525 231 25 41 chr3 29858690 29859084 -197665494 - MLT1I LTR MaLR -21 388 1 26 0 0 0 chr3 29861555 29861581 -197662997 + AT_rich Low_complexity Low_complexity 1 26 0 397 304 101 14 chr3 29863436 29863643 -197660935 + MIR SINE MIR 1 225 -37 290 299 82 13 chr3 29863714 29863955 -197660623 - L1MC/D LINE L1 -450 5671 5535 22 70 0 0 chr3 29864155 29864198 -197660380 + AT_rich Low_complexity Low_complexity 1 43 0 7470 23 6 4 chr3 29865702 29866703 -197657875 + L1PA4 LINE L1 5154 6155 0 449 270 34 39 chr3 29867048 29867226 -197657352 - MLT1K LTR MaLR -36 552 376 670 214 11 93 chr3 29867336 29867412 -197657166 - MER106B DNA MER1_type 0 236 155 2733 115 14 14 chr3 29867412 29867839 -197656739 - L1PB1 LINE L1 -1 6150 5724 670 214 11 93 chr3 29867839 29868015 -197656563 - MER106B DNA MER1_type -81 155 1 201 353 141 18 chr3 29868508 29868834 -197655744 - L2 LINE L2 -887 2427 2062 1750 200 59 122 chr3 29868950 29869665 -197654913 + LTR8A LTR ERV1 34 703 -24 421 335 79 0 chr3 29869866 29870018 -197654560 + MIR SINE MIR 30 193 -69 1174 183 173 145 chr3 29870091 29870287 -197654291 + LTR48 LTR ERV1 1 190 -454 1621 122 4 0 chr3 29870287 29870517 -197654061 + AluSp SINE Alu 5 235 -78 1174 183 173 145 chr3 29870517 29871017 -197653561 + LTR48 LTR ERV1 190 573 -71 1834 148 20 10 chr3 29871030 29871328 -197653250 + AluSx SINE Alu 1 301 -11 36 91 0 0 chr3 29872628 29872727 -197651851 + AT_rich Low_complexity Low_complexity 1 99 0 1744 254 100 60 chr3 29873277 29874220 -197650358 + Zaphod DNA AcHobo 9 988 -3043 180 0 0 0 chr3 29874464 29874484 -197650094 + (T)n Simple_repeat Simple_repeat 1 20 0 27 0 0 0 chr3 29874655 29874682 -197649896 + AT_rich Low_complexity Low_complexity 1 27 0 2253 86 0 3 chr3 29874964 29875255 -197649323 - AluY SINE Alu -21 290 1 349 384 87 5 chr3 29875850 29876069 -197648509 - HAL1b LINE L1 -732 616 380 26 0 0 0 chr3 29877221 29877247 -197647331 + AT_rich Low_complexity Low_complexity 1 26 0 388 305 123 17 chr3 29877297 29877533 -197647045 - MIR SINE MIR -1 261 1 363 290 127 16 chr3 29877936 29878315 -197646263 + L1M4 LINE L1 4256 4676 -1470 848 226 58 58 chr3 29878441 29878702 -197645876 + MIR SINE MIR 1 261 -1 1749 163 20 0 chr3 29879075 29879370 -197645208 + AluSx SINE Alu 4 304 -8 501 191 9 19 chr3 29880324 29880429 -197644149 - L1ME3A LINE L1 -39 6131 6028 310 316 125 7 chr3 29881588 29881740 -197642838 - L1MDb LINE L1 -3983 2604 2435 23 68 0 0 chr3 29883860 29883904 -197640674 + AT_rich Low_complexity Low_complexity 1 44 0 1956 240 74 27 chr3 29884371 29885182 -197639396 - L1MDb LINE L1 -4474 1932 1072 401 270 226 15 chr3 29885518 29885792 -197638786 - L1MEc LINE L1 -4002 2394 2063 357 256 104 24 chr3 29886005 29886169 -197638409 - HAL1 LINE L1 -828 1679 1503 244 260 44 44 chr3 29886181 29886362 -197638216 - L1MEc LINE L1 -4934 1462 1282 354 277 62 18 chr3 29886453 29886565 -197638013 - L2 LINE L2 -5 3308 3192 2363 205 114 2 chr3 29886594 29887146 -197637432 + MER90 LTR ERV1 1 614 0 28 0 0 0 chr3 29887262 29887290 -197637288 + AT_rich Low_complexity Low_complexity 1 28 0 1835 114 0 0 chr3 29888277 29888523 -197636055 - AluSx SINE Alu -66 246 1 267 308 84 28 chr3 29888893 29889000 -197635578 - L2 LINE L2 -5 3267 3155 1956 141 0 0 chr3 29889890 29890173 -197634405 + AluSx SINE Alu 5 287 -25 842 256 19 5 chr3 29890778 29890985 -197633593 + MER58A DNA MER1_type 11 220 -4 318 300 0 0 chr3 29891227 29891307 -197633271 - MER5A DNA MER1_type 0 189 110 261 0 0 0 chr3 29891579 29891608 -197632970 + (TG)n Simple_repeat Simple_repeat 1 29 0 280 256 171 16 chr3 29891631 29891760 -197632818 + MIR SINE MIR 6 154 -108 1579 134 0 109 chr3 29891802 29892122 -197632456 - AluJb SINE Alu -16 286 2 221 323 143 31 chr3 29892272 29892433 -197632145 - MER5A DNA MER1_type -9 180 2 218 95 24 0 chr3 29894066 29894108 -197630470 + (TAGA)n Simple_repeat Simple_repeat 1 43 0 1341 275 31 23 chr3 29894846 29895235 -197629343 - MLT1I LTR MaLR 0 409 18 258 323 139 6 chr3 29895244 29895402 -197629176 + L2 LINE L2 3133 3311 -2 276 81 32 16 chr3 29896349 29896411 -197628167 + (CAAA)n Simple_repeat Simple_repeat 2 64 0 26 0 0 0 chr3 29897813 29897839 -197626739 + AT_rich Low_complexity Low_complexity 1 26 0 271 341 81 8 chr3 29899018 29899141 -197625437 + MIR SINE MIR 16 147 -61 32 26 0 0 chr3 29899320 29899359 -197625219 + AT_rich Low_complexity Low_complexity 1 39 0 273 227 57 0 chr3 29899966 29900054 -197624524 - L1ME3A LINE L1 0 6170 6078 259 330 55 9 chr3 29900169 29900278 -197624300 - L2 LINE L2 -2 3311 3198 417 244 24 8 chr3 29901098 29901225 -197623353 - L1ME3A LINE L1 0 6170 6042 274 273 68 0 chr3 29901273 29901405 -197623173 - L1ME3A LINE L1 -219 5951 5811 4509 175 47 18 chr3 29901492 29902560 -197622018 + L1MB3 LINE L1 5072 6166 -17 26 0 0 0 chr3 29903332 29903358 -197621220 + AT_rich Low_complexity Low_complexity 1 26 0 343 279 39 8 chr3 29903597 29903726 -197620852 + L2 LINE L2 3177 3309 -4 22 70 0 0 chr3 29903792 29903835 -197620743 + AT_rich Low_complexity Low_complexity 1 43 0 1386 242 102 19 chr3 29903994 29904424 -197620154 + MLT1D LTR MaLR 40 505 0 702 282 81 8 chr3 29904445 29904679 -197619899 - MIR SINE MIR -11 251 1 1607 222 32 22 chr3 29905774 29906144 -197618434 - MLT1A2 LTR MaLR 0 374 1 277 340 41 0 chr3 29907971 29908068 -197616510 + MIR SINE MIR 76 176 -86 186 167 0 0 chr3 29909229 29909265 -197615313 + GA-rich Low_complexity Low_complexity 2 37 0 466 252 218 0 chr3 29910723 29910870 -197613708 - MER5A DNA MER1_type -2 187 9 355 261 34 0 chr3 29912511 29912599 -197611979 + MIR SINE MIR 98 188 -74 397 301 32 8 chr3 29912629 29912752 -197611826 + L2 LINE L2 3139 3264 -8 22 56 0 0 chr3 29912752 29912788 -197611790 + AT_rich Low_complexity Low_complexity 1 36 0 2758 31 0 0 chr3 29913074 29913392 -197611186 - AluYb8 SINE Alu 0 318 1 745 264 77 20 chr3 29913449 29913695 -197610883 - LTR16A LTR ERVL -6 444 185 346 167 0 0 chr3 29913942 29914002 -197610576 + MIR SINE MIR 129 188 -74 219 339 33 61 chr3 29914141 29914321 -197610257 - L2 LINE L2 -219 3053 2879 861 238 16 11 chr3 29914546 29914731 -197609847 + MER5A DNA MER1_type 3 188 -1 213 65 0 0 chr3 29915093 29915124 -197609454 + (CAAA)n Simple_repeat Simple_repeat 4 34 0 428 154 0 13 chr3 29915538 29915616 -197608962 + MADE1 DNA Mariner 4 80 0 330 26 0 0 chr3 29915735 29915774 -197608804 + (TG)n Simple_repeat Simple_repeat 2 40 0 1005 171 11 11 chr3 29916501 29916857 -197607721 + GA-rich Low_complexity Low_complexity 1 356 0 247 239 45 34 chr3 29916938 29917026 -197607552 - MIR SINE MIR -108 154 66 803 232 27 5 chr3 29917051 29917236 -197607342 - MER5A DNA MER1_type 0 189 1 180 313 15 15 chr3 29917245 29917312 -197607266 + L2 LINE L2 3243 3309 -4 402 278 81 64 chr3 29917489 29917864 -197606714 - LTR16C LTR ERVL -48 409 13 324 0 0 0 chr3 29917946 29917982 -197606596 + (TG)n Simple_repeat Simple_repeat 2 37 0 338 205 0 0 chr3 29917982 29918060 -197606518 + MER116 DNA Mariner 1 78 -2 389 315 98 39 chr3 29918552 29918962 -197605616 - MLT1L LTR MaLR -4 611 178 344 169 0 12 chr3 29919661 29919744 -197604834 + GA-rich Low_complexity Low_complexity 2 83 0 24 0 0 0 chr3 29920202 29920226 -197604352 + AT_rich Low_complexity Low_complexity 1 24 0 5161 95 59 2 chr3 29921047 29921849 -197602729 + L1MA1 LINE L1 5451 6297 -5 203 350 206 0 chr3 29923272 29923369 -197601209 - MER91A DNA MER1_type -51 145 29 279 133 0 0 chr3 29923690 29923735 -197600843 + (TCCCC)n Simple_repeat Simple_repeat 5 49 0 1725 155 43 11 chr3 29923752 29924030 -197600548 - AluSx SINE Alu -25 287 1 803 200 54 32 chr3 29924512 29924539 -197600039 + MER5A DNA MER1_type 1 26 -163 219 69 0 0 chr3 29924539 29924568 -197600010 + (CCA)n Simple_repeat Simple_repeat 3 31 0 803 200 54 32 chr3 29924568 29924725 -197599853 + MER5A DNA MER1_type 26 189 0 2585 23 0 0 chr3 29924928 29925281 -197599297 + L1PA4 LINE L1 5852 6204 0 601 139 9 28 chr3 29925339 29925447 -197599131 + FLAM_C SINE Alu 31 136 -7 430 296 266 23 chr3 29925642 29925946 -197598632 + L3 LINE CR1 1195 1572 -5 474 291 81 17 chr3 29925977 29926149 -197598429 - MIR SINE MIR -1 261 79 547 213 41 0 chr3 29926815 29926937 -197597641 - L1MB4 LINE L1 -4 6176 6050 489 319 126 6 chr3 29927681 29927863 -197596715 - MIR3 SINE MIR -2 206 3 493 322 74 5 chr3 29928073 29928275 -197596303 + MIR SINE MIR 12 227 -35 209 364 74 12 chr3 29932247 29932409 -197592169 + L2 LINE L2 2890 3061 -211 10587 40 4 0 chr3 29932569 29934625 -197589953 - L1PA4 LINE L1 -3 6152 4089 189 276 138 52 chr3 29934658 29934774 -197589804 + L2 LINE L2 2342 2467 -847 633 316 62 32 chr3 29934841 29935211 -197589367 + LTR16B LTR ERVL 82 462 -2 4523 212 24 10 chr3 29935338 29935904 -197588674 - L1MB8 LINE L1 -5 6173 5617 2086 122 0 13 chr3 29935904 29936216 -197588362 - AluSc SINE Alu -1 308 1 4523 212 24 10 chr3 29936216 29937547 -197587031 - L1MB8 LINE L1 -561 5617 4247 191 382 113 16 chr3 29937549 29937735 -197586843 + L2 LINE L2 2605 2808 -506 345 226 0 0 chr3 29938372 29938456 -197586122 + (TA)n Simple_repeat Simple_repeat 1 84 0 2342 97 3 0 chr3 29938456 29938754 -197585824 - AluSp SINE Alu -14 299 1 195 407 68 0 chr3 29938845 29938963 -197585615 - L2 LINE L2 -220 3052 2927 305 195 305 42 chr3 29939402 29939520 -197585058 + MER5A DNA MER1_type 41 189 0 254 108 0 0 chr3 29940127 29940164 -197584414 - MADE1 DNA Mariner -43 37 1 28 29 0 0 chr3 29941097 29941132 -197583446 + AT_rich Low_complexity Low_complexity 1 35 0 1531 120 0 5 chr3 29941957 29942174 -197582404 - AluSx SINE Alu -96 216 1 377 275 126 84 chr3 29942253 29942562 -197582016 - L1MC4 LINE L1 -1043 6999 6678 198 344 53 53 chr3 29944109 29944240 -197580338 + MIR SINE MIR 26 156 -106 596 124 62 0 chr3 29944618 29944715 -197579863 - MLT1F1 LTR MaLR 0 567 465 424 229 19 9 chr3 29945280 29945385 -197579193 - LTR16A LTR ERVL -4 446 341 580 174 17 0 chr3 29945912 29946027 -197578551 - L1MA9 LINE L1 -22 6290 6174 23 0 0 0 chr3 29946056 29946079 -197578499 + AT_rich Low_complexity Low_complexity 1 23 0 29085 114 19 25 chr3 29946101 29952297 -197572281 - L1PA8 LINE L1 -226 6261 6 200 333 27 0 chr3 29952849 29952924 -197571654 - MIR SINE MIR -108 154 78 200 333 27 0 chr3 29953504 29953579 -197570999 - MIR SINE MIR -108 154 78 197 250 0 0 chr3 29954640 29954680 -197569898 + MIR SINE MIR 93 132 -130 7269 114 123 117 chr3 29954732 29956418 -197568160 + pTR5 LTR ERV1 743 2438 0 287 184 0 0 chr3 29957713 29957762 -197566816 - MER21A LTR ERV1 -870 61 13 279 79 0 0 chr3 29957770 29957808 -197566770 + (TG)n Simple_repeat Simple_repeat 2 39 0 3999 186 71 38 chr3 29957831 29958700 -197565878 + MER21A LTR ERV1 32 929 -2 1020 154 6 0 chr3 29959156 29959325 -197565253 - MER3 DNA MER1_type -82 127 5 1531 303 37 17 chr3 29960799 29961415 -197563163 - L2 LINE L2 -187 3126 2501 263 172 0 17 chr3 29962058 29962116 -197562462 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 24 32 0 0 chr3 29962135 29962166 -197562412 + AT_rich Low_complexity Low_complexity 1 31 0 1097 285 201 20 chr3 29963230 29964482 -197560096 + L1MC2 LINE L1 37 1554 -4842 4902 259 84 32 chr3 29964513 29966717 -197557861 + L1MC2 LINE L1 2364 4673 -1542 305 288 211 36 chr3 29969803 29970140 -197554438 - HAL1b LINE L1 -572 776 381 277 346 0 0 chr3 29970805 29970886 -197553692 - L2 LINE L2 -668 2646 2566 4295 14 0 0 chr3 29971765 29972257 -197552321 + L1PA2 LINE L1 5660 6151 -4 190 26 51 51 chr3 29972260 29972299 -197552279 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 186 43 0 0 chr3 29972554 29972577 -197552001 + (GA)n Simple_repeat Simple_repeat 2 24 0 4266 182 30 15 chr3 29972577 29973484 -197551094 + L1MC2 LINE L1 5494 6413 0 22 0 0 0 chr3 29973601 29973623 -197550955 + AT_rich Low_complexity Low_complexity 1 22 0 851 134 0 0 chr3 29974577 29974689 -197549889 + AluSq/x SINE Alu 3 114 -199 201 108 0 0 chr3 29974770 29974807 -197549771 + (A)n Simple_repeat Simple_repeat 1 37 0 1118 112 56 17 chr3 29974811 29974990 -197549588 + AluSg/x SINE Alu 126 311 -1 655 327 28 5 chr3 29975043 29975254 -197549324 - MIR SINE MIR -44 218 3 4523 161 24 4 chr3 29975620 29976492 -197548086 - L1MA8 LINE L1 -207 6084 5197 220 240 39 19 chr3 29976625 29976729 -197547849 + (TAGA)n Simple_repeat Simple_repeat 4 109 0 618 183 142 22 chr3 29976751 29976908 -197547670 - MIR SINE MIR -62 146 5 872 221 22 36 chr3 29977470 29977692 -197546886 + MER20 DNA MER1_type 1 219 0 3344 223 93 39 chr3 29978615 29979740 -197544838 + L1MC4 LINE L1 6857 8042 0 2300 126 16 22 chr3 29979749 29980115 -197544463 + THE1B LTR MaLR 1 364 0 251 261 52 60 chr3 29980341 29980475 -197544103 + MIR SINE MIR 86 218 -44 253 312 11 26 chr3 29980858 29981044 -197543534 - MIR SINE MIR -12 250 3 420 332 65 17 chr3 29981395 29981627 -197542951 + MIR SINE MIR 18 260 -2 240 86 0 0 chr3 29982312 29982347 -197542231 + (TTA)n Simple_repeat Simple_repeat 2 36 0 21 57 0 0 chr3 29982753 29982788 -197541790 + AT_rich Low_complexity Low_complexity 1 35 0 744 147 0 0 chr3 29982858 29982994 -197541584 + (GGAA)n Simple_repeat Simple_repeat 4 139 0 7436 40 1 0 chr3 29983544 29984454 -197540124 - L1PA4 LINE L1 -3064 3318 2405 18696 38 0 0 chr3 29984454 29985709 -197538869 + L1PA4 LINE L1 3312 4566 -1825 2083 85 39 39 chr3 29985709 29986016 -197538562 - AluY SINE Alu -4 307 1 18696 38 0 0 chr3 29986016 29987850 -197536728 + L1PA4 LINE L1 4565 6391 0 7436 40 1 0 chr3 29987850 29987864 -197536714 - L1M4c LINE L1 -3977 2405 2393 233 250 18 0 chr3 29988045 29988101 -197536477 - Charlie8 DNA MER1_type -990 1427 1371 1847 129 43 13 chr3 29988549 29988851 -197535727 + AluJo SINE Alu 1 311 -1 323 313 23 15 chr3 29988853 29988984 -197535594 - LTR67 LTR ERVL -12 545 414 1835 290 118 12 chr3 29989021 29989870 -197534708 + HAL1 LINE L1 25 963 -1544 1996 272 142 25 chr3 29989880 29991180 -197533398 + HAL1 LINE L1 1055 2507 0 699 253 28 11 chr3 29991333 29991511 -197533067 + MER5A DNA MER1_type 1 181 -8 636 282 17 6 chr3 29991537 29991718 -197532860 - MER5A DNA MER1_type 0 189 7 1762 217 64 14 chr3 29991718 29992216 -197532362 - Charlie1b DNA MER1_type 0 523 1 2425 43 4 0 chr3 29993835 29994139 -197530439 - AluY SINE Alu 0 307 3 231 250 0 0 chr3 29995967 29996035 -197528543 + GA-rich Low_complexity Low_complexity 3 70 0 191 289 111 0 chr3 29996678 29996768 -197527810 + MER5A DNA MER1_type 7 106 -83 1739 138 91 50 chr3 29997209 29997592 -197526986 - L1MA9 LINE L1 -9 6303 5905 * 3629 171 23 18 chr3 29997589 29998822 -197525756 + L1MA9 LINE L1 4627 5869 -443 24 32 0 0 chr3 29998867 29998898 -197525680 + AT_rich Low_complexity Low_complexity 1 31 0 554 228 8 120 chr3 29999008 29999114 -197525464 - MER58C DNA MER1_type -2206 214 148 679 179 17 0 chr3 29999114 29999231 -197525347 + FLAM_A SINE Alu 1 119 -14 554 228 8 120 chr3 29999231 29999365 -197525213 - MER58C DNA MER1_type -2272 148 1 544 268 16 66 chr3 30001949 30002192 -197522386 - L2 LINE L2 -8 3305 3075 475 272 175 26 chr3 30002309 30002537 -197522041 + MIR SINE MIR 1 262 0 510 272 61 7 chr3 30003833 30003980 -197520598 + MLT1I LTR MaLR 47 201 -208 216 256 0 0 chr3 30004696 30004739 -197519839 - MIR3 SINE MIR -21 187 145 1985 137 11 0 chr3 30005103 30005388 -197519190 + AluSq SINE Alu 1 288 -25 268 279 84 63 chr3 30005473 30005703 -197518875 - MIR SINE MIR 0 262 30 245 321 28 46 chr3 30007410 30007519 -197517059 + MIR SINE MIR 156 262 0 1923 76 4 0 chr3 30007560 30007810 -197516768 + L1PA7 LINE L1 5888 6138 -16 264 421 103 0 chr3 30008207 30008440 -197516138 - L2 LINE L2 -253 3060 2804 355 240 0 56 chr3 30008766 30008891 -197515687 + L1MC5 LINE L1 7808 7925 -36 387 291 172 0 chr3 30009189 30009340 -197515238 - MER5A DNA MER1_type -6 183 7 1524 211 77 32 chr3 30009886 30010265 -197514313 - MSTD LTR MaLR 0 396 1 2402 88 0 3 chr3 30010887 30011195 -197513383 - AluSg SINE Alu -1 309 3 1960 107 3 17 chr3 30011524 30011914 -197512664 + AluSp SINE Alu 1 386 0 754 247 209 30 chr3 30011965 30012362 -197512216 + MLT1K LTR MaLR 121 588 0 1814 152 7 7 chr3 30012680 30012976 -197511602 - AluSx SINE Alu -16 296 1 23 54 0 0 chr3 30013060 30013097 -197511481 + AT_rich Low_complexity Low_complexity 1 37 0 297 243 106 25 chr3 30013562 30013760 -197510818 + MIR SINE MIR 15 225 -37 815 281 132 18 chr3 30013789 30014123 -197510455 + LTR16A LTR ERVL 65 436 -14 21 0 0 0 chr3 30014470 30014491 -197510087 + AT_rich Low_complexity Low_complexity 1 21 0 210 250 0 0 chr3 30014510 30014554 -197510024 + MIR3 SINE MIR 164 207 -1 315 343 6 40 chr3 30014838 30015013 -197509565 - MIR3 SINE MIR -26 182 14 22 35 0 0 chr3 30015598 30015627 -197508951 + AT_rich Low_complexity Low_complexity 1 29 0 462 339 21 43 chr3 30016609 30016842 -197507736 - MIR SINE MIR -32 230 3 246 32 0 0 chr3 30016995 30017026 -197507552 + (CA)n Simple_repeat Simple_repeat 2 32 0 2163 200 43 49 chr3 30017183 30017661 -197506917 + MLT2B1 LTR ERVL 1 477 -43 441 0 0 0 chr3 30017661 30017710 -197506868 + (CA)n Simple_repeat Simple_repeat 2 50 0 2163 200 43 49 chr3 30017710 30017742 -197506836 + MLT2B1 LTR ERVL 477 508 -12 498 26 40 0 chr3 30017977 30018053 -197506525 + (TG)n Simple_repeat Simple_repeat 2 80 0 684 222 0 0 chr3 30018053 30018170 -197506408 - FLAM_A SINE Alu -15 118 2 635 290 55 15 chr3 30018773 30018973 -197505605 + MIR SINE MIR 23 230 -32 248 200 32 63 chr3 30020163 30020200 -197504378 - L1MC4 LINE L1 -1298 6744 6707 315 0 0 0 chr3 30020200 30020235 -197504343 + (TG)n Simple_repeat Simple_repeat 2 36 0 248 200 32 63 chr3 30020235 30020292 -197504286 - L1MC4 LINE L1 -1335 6707 6653 10018 35 0 0 chr3 30020525 30022500 -197502078 + L1PA4 LINE L1 4173 6148 -7 23 0 0 0 chr3 30025779 30025802 -197498776 + AT_rich Low_complexity Low_complexity 1 23 0 410 36 18 0 chr3 30027141 30027197 -197497381 + (TG)n Simple_repeat Simple_repeat 2 58 0 487 256 35 74 chr3 30027592 30027795 -197496783 + HAL1 LINE L1 1 195 -2312 265 358 30 8 chr3 30028131 30028265 -197496313 - MIR3 SINE MIR -49 159 23 309 256 111 11 chr3 30029089 30029179 -197495399 + MIR SINE MIR 43 141 -67 203 364 34 0 chr3 30029343 30029431 -197495147 + MIR SINE MIR 53 143 -65 * 414 246 9 18 chr3 30029428 30029538 -197495040 - L2 LINE L2 0 3313 3205 223 282 118 27 chr3 30029542 30029652 -197494926 + MIR SINE MIR 143 262 0 296 318 99 10 chr3 30029688 30029832 -197494746 - MIR3 SINE MIR -63 145 10 627 233 83 75 chr3 30029844 30029951 -197494627 + MER97a DNA MER1_type? 1 106 -788 2799 146 34 6 chr3 30029951 30030450 -197494128 + L1MB3 LINE L1 5669 6181 -2 627 233 83 75 chr3 30030450 30030595 -197493983 + MER97a DNA MER1_type? 106 255 -639 27 0 0 0 chr3 30030638 30030665 -197493913 + AT_rich Low_complexity Low_complexity 1 27 0 1266 224 95 53 chr3 30030928 30031100 -197493478 + MER97c DNA MER1_type? 238 401 -689 2057 141 13 0 chr3 30031100 30031404 -197493174 + AluSx SINE Alu 1 308 -4 1266 224 95 53 chr3 30031404 30031542 -197493036 + MER97c DNA MER1_type? 401 532 -558 2007 133 3 7 chr3 30031542 30031835 -197492743 - AluSx SINE Alu -12 300 9 1266 224 95 53 chr3 30031835 30031956 -197492622 + MER97c DNA MER1_type? 532 688 -402 261 267 0 44 chr3 30031970 30032060 -197492518 + MER97a DNA MER1_type? 806 891 -3 1889 162 0 0 chr3 30032204 30032488 -197492090 - AluSx SINE Alu -26 286 3 812 162 14 0 chr3 30032942 30033084 -197491494 - L1MA10 LINE L1 -4 6330 6187 2278 64 0 0 chr3 30034599 30034895 -197489683 - L1PA8 LINE L1 -2 6170 5875 243 252 103 28 chr3 30035033 30035140 -197489438 - MLT1H LTR MaLR -146 403 289 1172 209 26 50 chr3 30035187 30035722 -197488856 - MLT1E2 LTR MaLR -3 623 6 254 277 72 12 chr3 30035840 30035923 -197488655 - MLT1H LTR MaLR -461 88 1 554 245 104 66 chr3 30036138 30036350 -197488228 - MIR SINE MIR 0 262 43 22 35 0 0 chr3 30036355 30036384 -197488194 + AT_rich Low_complexity Low_complexity 1 29 0 1631 243 84 2 chr3 30036847 30037312 -197487266 - MLT1D LTR MaLR 0 505 3 2030 127 43 32 chr3 30037402 30037773 -197486805 + THE1C LTR MaLR 1 375 0 357 267 67 67 chr3 30037916 30038111 -197486467 - L1ME LINE L1 -669 5452 5258 1219 252 105 6 chr3 30038222 30038583 -197485995 - MLT1J2 LTR MaLR -53 397 1 274 154 0 0 chr3 30039170 30039209 -197485369 - AluS SINE Alu -243 57 19 819 117 0 0 chr3 30039209 30039320 -197485258 - AluSq/x SINE Alu -202 111 1 482 227 9 0 chr3 30039409 30039519 -197485059 - MLT2F LTR ERVL -14 649 539 609 273 6 19 chr3 30039598 30039759 -197484819 + MLT1F LTR MaLR 1 159 -383 27 29 0 0 chr3 30039901 30039935 -197484643 + AT_rich Low_complexity Low_complexity 1 34 0 2405 66 10 10 chr3 30039981 30040286 -197484292 + AluY SINE Alu 1 305 -6 21 0 0 0 chr3 30040445 30040466 -197484112 + AT_rich Low_complexity Low_complexity 1 21 0 314 316 62 63 chr3 30040564 30041204 -197483374 - L1ME LINE L1 -1497 4649 4010 1613 147 96 34 chr3 30041204 30041557 -197483021 + THE1C LTR MaLR 1 375 0 314 316 62 63 chr3 30041557 30041774 -197482804 - L1ME LINE L1 -2136 4010 3791 1775 166 0 17 chr3 30041774 30042064 -197482514 - AluJb SINE Alu -22 290 6 314 316 62 63 chr3 30042064 30042124 -197482454 - L1ME LINE L1 -2355 3791 3732 342 250 39 0 chr3 30042324 30042428 -197482150 - Charlie1 DNA MER1_type -5 2756 2649 263 287 37 37 chr3 30042428 30042592 -197481986 - L1ME LINE L1 -3344 2802 2639 415 310 34 25 chr3 30044105 30044428 -197480150 + L1ME3A LINE L1 5034 5359 -787 631 151 43 50 chr3 30044554 30044693 -197479885 + L1MB3 LINE L1 6042 6179 -4 604 252 128 46 chr3 30044712 30044838 -197479740 + L1ME3A LINE L1 5368 5482 -688 2260 116 3 0 chr3 30044838 30045148 -197479430 + AluSp SINE Alu 1 311 -2 604 252 128 46 chr3 30045148 30045303 -197479275 + L1ME3A LINE L1 5482 5672 -498 258 227 0 0 chr3 30045348 30045423 -197479155 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 779 215 185 39 chr3 30045471 30045801 -197478777 + L1ME3A LINE L1 5675 6052 -118 561 303 23 36 chr3 30045822 30046043 -197478535 - LTR16C LTR ERVL 0 491 274 200 122 0 24 chr3 30046067 30046108 -197478470 + (GGA)n Simple_repeat Simple_repeat 1 40 0 272 277 125 0 chr3 30046286 30046398 -197478180 + L1ME3A LINE L1 6040 6165 -5 285 405 47 7 chr3 30046700 30046848 -197477730 - L2 LINE L2 -4 3268 3115 1625 171 3 35 chr3 30046877 30047163 -197477415 + AluJb SINE Alu 3 279 -33 186 143 0 0 chr3 30047163 30047198 -197477380 + (GGGAA)n Simple_repeat Simple_repeat 1 35 0 221 340 78 70 chr3 30047334 30047705 -197476873 - L2 LINE L2 -352 2962 2589 228 35 0 0 chr3 30048019 30048048 -197476530 + (CA)n Simple_repeat Simple_repeat 2 30 0 7430 32 1 4 chr3 30048367 30049419 -197475159 + L1PA4 LINE L1 5106 6154 -1 507 225 18 9 chr3 30049471 30049582 -197474996 - L2 LINE L2 -7 3306 3195 587 341 149 10 chr3 30049616 30050099 -197474479 + L2 LINE L2 2698 3261 -11 348 280 72 0 chr3 30051334 30051459 -197473119 + MIR3 SINE MIR 61 194 -14 350 266 24 77 chr3 30052876 30053045 -197471533 + L2 LINE L2 3094 3253 -60 2748 173 60 17 chr3 30053670 30054361 -197470217 + L1MB3 LINE L1 5122 5840 -343 244 284 30 76 chr3 30054383 30054580 -197469998 - L1ME LINE L1 -335 5786 5599 1360 326 118 44 chr3 30055338 30055952 -197468626 - L2 LINE L2 -243 3070 2503 12882 135 53 52 chr3 30055952 30058079 -197466499 + Tigger1 DNA MER2_type 1 2134 -284 215 31 31 0 chr3 30058079 30058111 -197466467 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 12882 135 53 52 chr3 30058111 30058397 -197466181 + Tigger1 DNA MER2_type 2134 2418 0 1360 326 118 44 chr3 30058397 30059046 -197465532 - L2 LINE L2 -810 2503 1706 814 229 55 27 chr3 30059070 30059253 -197465325 - MER5A DNA MER1_type 0 189 2 297 351 99 0 chr3 30059260 30059431 -197465147 - L2 LINE L2 -1635 1679 1492 394 297 103 26 chr3 30060587 30060742 -197463836 + MLT1I LTR MaLR 47 213 -196 611 204 171 7 chr3 30062480 30062632 -197461946 + MER5A DNA MER1_type 12 188 -1 244 143 0 0 chr3 30062794 30062829 -197461749 - tRNA-Gly-GGG tRNA tRNA -38 36 2 281 253 27 13 chr3 30063038 30063113 -197461465 - L2 LINE L2 0 3272 3197 21 0 0 0 chr3 30063706 30063727 -197460851 + AT_rich Low_complexity Low_complexity 1 21 0 377 311 28 0 chr3 30063742 30063848 -197460730 - MIR SINE MIR -122 140 32 24 53 0 0 chr3 30063903 30063941 -197460637 + AT_rich Low_complexity Low_complexity 1 38 0 273 261 122 9 chr3 30064106 30064221 -197460357 - L2 LINE L2 0 3272 3145 305 250 0 0 chr3 30064225 30064293 -197460285 + MER58 DNA MER1_type 2352 2419 -1 435 259 222 0 chr3 30064294 30064429 -197460149 - L2 LINE L2 -1026 2288 2124 271 383 57 5 chr3 30064448 30064641 -197459937 + MIR SINE MIR 12 214 -48 796 264 71 17 chr3 30064659 30064898 -197459680 + MIR SINE MIR 11 262 0 201 359 41 74 chr3 30065701 30065971 -197458607 + L2 LINE L2 2967 3227 -45 17441 182 28 34 chr3 30066016 30066381 -197458197 + L1MA2 LINE L1 16 382 -7183 1744 92 8 0 chr3 30066381 30066621 -197457957 - L1PA7 LINE L1 -3 6151 5910 17441 182 28 34 chr3 30066621 30069645 -197454933 + L1MA2 LINE L1 382 3423 -4142 186 43 0 0 chr3 30069645 30069668 -197454910 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 17441 182 28 34 chr3 30069668 30070227 -197454351 + L1MA2 LINE L1 3423 3984 -3581 462 101 0 0 chr3 30070227 30070296 -197454282 + (TA)n Simple_repeat Simple_repeat 2 70 0 17441 182 28 34 chr3 30070296 30072748 -197451830 + L1MA2 LINE L1 3984 6381 -1184 2801 125 15 5 chr3 30072748 30073157 -197451421 + MLT2A2 LTR ERVL 1 413 -40 313 283 0 22 chr3 30073192 30073284 -197451294 - L1MC4 LINE L1 -1339 6703 6614 238 222 22 0 chr3 30073286 30073376 -197451202 + (TA)n Simple_repeat Simple_repeat 2 93 0 3995 117 33 3 chr3 30073378 30073985 -197450593 + HERVL-A2 LTR ERVL 1640 2264 -3390 587 40 0 0 chr3 30073987 30074062 -197450516 + HERVL-A2 LTR ERVL 5580 5654 0 1877 105 50 4 chr3 30074062 30074399 -197450179 + MLT2A2 LTR ERVL 1 321 -132 540 0 0 0 chr3 30074399 30074459 -197450119 + (TA)n Simple_repeat Simple_repeat 1 60 0 198 0 0 0 chr3 30074458 30074480 -197450098 + (CA)n Simple_repeat Simple_repeat 2 23 0 * 1877 105 50 4 chr3 30074459 30074520 -197450058 + MLT2A2 LTR ERVL 321 453 0 1558 201 0 21 chr3 30074522 30074901 -197449677 + L1MA2 LINE L1 6379 6749 -816 2844 119 119 31 chr3 30074903 30075201 -197449377 + L1PB2 LINE L1 5585 5855 -296 2251 143 12 6 chr3 30075201 30075536 -197449042 - MER1B DNA MER1_type 0 337 1 2844 119 119 31 chr3 30075536 30075758 -197448820 + L1PB2 LINE L1 5855 6151 0 6117 113 20 6 chr3 30075771 30075800 -197448778 + L1MA2 LINE L1 6744 6771 -952 1471 135 0 9 chr3 30075800 30076015 -197448563 - AluSg/x SINE Alu -15 297 85 6117 113 20 6 chr3 30076015 30076952 -197447626 + L1MA2 LINE L1 6771 7723 0 2175 77 3 3 chr3 30077689 30077987 -197446591 + L1PA6 LINE L1 5857 6154 0 473 330 92 37 chr3 30079520 30079962 -197444616 + L1ME LINE L1 5293 5762 -400 405 281 176 6 chr3 30080288 30080545 -197444033 - L1MC/D LINE L1 -760 5386 5186 982 235 50 4 chr3 30080587 30080847 -197443731 + L1ME3A LINE L1 5527 5798 -372 717 288 34 48 chr3 30080959 30081313 -197443265 + L1ME3A LINE L1 5818 6166 -4 24 53 0 0 chr3 30081514 30081552 -197443026 + AT_rich Low_complexity Low_complexity 1 38 0 1457 194 68 21 chr3 30081930 30082270 -197442308 - MLT1A1 LTR MaLR 0 365 10 198 143 0 0 chr3 30084165 30084200 -197440378 + (TC)n Simple_repeat Simple_repeat 2 36 0 207 224 20 0 chr3 30084206 30084255 -197440323 - MIR SINE MIR -25 237 188 6855 71 14 0 chr3 30084628 30085664 -197438914 - L1PA7 LINE L1 0 6154 5116 4501 138 72 4 chr3 30086086 30086853 -197437725 + L1PA16 LINE L1 5340 6158 -8 839 199 30 6 chr3 30086966 30087132 -197437446 + MER3 DNA MER1_type 1 123 -86 381 43 0 0 chr3 30087319 30087366 -197437212 + (TA)n Simple_repeat Simple_repeat 2 48 0 31 0 0 0 chr3 30087426 30087457 -197437121 + AT_rich Low_complexity Low_complexity 1 31 0 1028 187 112 22 chr3 30087536 30087803 -197436775 - L1MB8 LINE L1 0 6178 5888 2429 53 0 10 chr3 30087816 30088117 -197436461 - AluY SINE Alu -13 298 1 22 70 0 0 chr3 30088235 30088278 -197436300 + AT_rich Low_complexity Low_complexity 1 43 0 6939 36 4 1 chr3 30089283 30090126 -197434452 + L1PA5 LINE L1 5309 6153 -1 570 228 0 0 chr3 30090248 30090371 -197434207 + L1MB5 LINE L1 6038 6160 -14 483 268 88 35 chr3 30091364 30091625 -197432953 + MLT1L LTR MaLR 119 393 -222 913 310 113 20 chr3 30091662 30092052 -197432526 - LTR16A LTR ERVL -22 428 3 503 312 90 0 chr3 30092060 30092249 -197432329 + MLT1L LTR MaLR 410 615 0 501 311 15 0 chr3 30092667 30092799 -197431779 + MIR3 SINE MIR 72 205 -3 1544 240 31 9 chr3 30093361 30093782 -197430796 + L1ME3 LINE L1 5338 5767 -397 1371 238 12 19 chr3 30093787 30094107 -197430471 + L1ME3 LINE L1 5845 6162 0 516 276 48 0 chr3 30094368 30094513 -197430065 - MIR SINE MIR -74 188 37 491 31 15 0 chr3 30094815 30094880 -197429698 + (CA)n Simple_repeat Simple_repeat 1 66 0 26 0 0 0 chr3 30095192 30095218 -197429360 + AT_rich Low_complexity Low_complexity 1 26 0 1281 183 25 108 chr3 30095565 30095963 -197428615 - MLT1A1 LTR MaLR 0 365 1 191 273 45 0 chr3 30096148 30096214 -197428364 + MIR SINE MIR 66 134 -128 2373 91 39 35 chr3 30096259 30096665 -197427913 + L1MA3 LINE L1 5896 6303 -2 242 296 23 0 chr3 30097266 30097354 -197427224 - L1MC4 LINE L1 -1339 6703 6614 476 287 0 6 chr3 30097461 30097642 -197426936 + (TA)n Simple_repeat Simple_repeat 1 180 0 256 217 22 43 chr3 30097683 30097775 -197426803 - L1MC4 LINE L1 -1339 6703 6614 254 303 0 0 chr3 30097796 30097885 -197426693 + L1MC4 LINE L1 6615 6703 -1339 * 255 294 0 0 chr3 30097819 30097904 -197426674 - L1MC4 LINE L1 -1339 6703 6619 309 169 22 11 chr3 30099543 30099632 -197424946 + (TA)n Simple_repeat Simple_repeat 1 90 0 207 0 0 0 chr3 30099745 30099768 -197424810 + (T)n Simple_repeat Simple_repeat 1 23 0 1840 161 27 21 chr3 30100041 30100414 -197424164 + THE1C LTR MaLR 1 375 0 298 244 72 54 chr3 30100469 30100604 -197423974 + MLT1C LTR MaLR 35 182 -285 183 339 119 0 chr3 30101709 30101827 -197422751 - MIR3 SINE MIR -7 201 70 361 251 46 109 chr3 30102180 30102419 -197422159 + L1ME4a LINE L1 5632 5855 -266 1945 169 0 10 chr3 30102542 30102855 -197421723 - AluJb SINE Alu -2 310 1 2525 58 0 0 chr3 30103064 30103374 -197421204 + AluY SINE Alu 1 310 -1 1989 195 35 53 chr3 30103537 30104049 -197420529 + MLT1D LTR MaLR 3 505 0 1935 99 22 4 chr3 30104454 30104727 -197419851 + AluSx SINE Alu 1 278 -34 2148 97 3 17 chr3 30105467 30105792 -197418786 - AluSx SINE Alu 0 312 1 1554 185 37 85 chr3 30105915 30106396 -197418182 - LTR37B LTR ERV1 -5 463 6 258 222 194 0 chr3 30106727 30106799 -197417779 - MIR SINE MIR -69 193 108 27 0 0 0 chr3 30107226 30107253 -197417325 + AT_rich Low_complexity Low_complexity 1 27 0 415 369 98 19 chr3 30107585 30107954 -197416624 + L2 LINE L2 2871 3268 -4 364 338 153 0 chr3 30109468 30109625 -197414953 - MER5A DNA MER1_type 0 189 9 556 206 94 25 chr3 30111677 30111837 -197412741 - MLT1D LTR MaLR -327 178 8 24 32 0 0 chr3 30112375 30112406 -197412172 + AT_rich Low_complexity Low_complexity 1 31 0 273 195 0 49 chr3 30112699 30112781 -197411797 - MLT2F LTR ERVL -2 661 584 269 263 38 12 chr3 30112948 30113028 -197411550 + MIR SINE MIR 49 130 -132 1011 221 46 36 chr3 30113046 30113353 -197411225 - MLT2C1 LTR ERVL -87 310 1 308 253 101 10 chr3 30114935 30115034 -197409544 + MLT1I LTR MaLR 281 388 -21 694 241 208 45 chr3 30115375 30115477 -197409101 + MLT1G LTR MaLR 43 127 -463 1783 193 0 3 chr3 30115477 30115783 -197408795 + AluJb SINE Alu 1 305 -7 694 241 208 45 chr3 30115783 30116129 -197408449 + MLT1G LTR MaLR 127 588 -2 592 246 43 7 chr3 30116276 30116387 -197408191 + Tigger5 DNA MER2_type 32 150 -2173 276 30 0 0 chr3 30116387 30116420 -197408158 + (TC)n Simple_repeat Simple_repeat 1 33 0 592 246 43 7 chr3 30116420 30116446 -197408132 + Tigger5 DNA MER2_type 150 174 -2149 429 219 118 17 chr3 30116470 30116589 -197407989 + MER21B LTR ERV1 368 498 -365 1461 128 0 9 chr3 30116590 30116816 -197407762 + Tigger5 DNA MER2_type 2098 2321 -2 421 326 28 7 chr3 30116818 30116962 -197407616 - MIR SINE MIR -101 161 15 1310 186 71 59 chr3 30117750 30118142 -197406436 + L1MC4 LINE L1 7505 7901 -141 269 327 83 16 chr3 30118141 30118395 -197406183 - L1M4 LINE L1 -1143 5003 4733 * 355 245 24 4 chr3 30118445 30118697 -197405881 + (TA)n Simple_repeat Simple_repeat 1 257 0 305 295 120 83 chr3 30118708 30118971 -197405607 - L1M4 LINE L1 -2792 3354 3102 5234 45 6 3 chr3 30118971 30119615 -197404963 + L1PA7 LINE L1 5507 6152 -2 305 295 120 83 chr3 30119615 30120353 -197404225 - L1M4 LINE L1 -3044 3102 2316 4237 167 27 1 chr3 30120805 30121504 -197403074 - MER44D DNA MER2_type -16 589 1 21 0 0 0 chr3 30121906 30121927 -197402651 + AT_rich Low_complexity Low_complexity 1 21 0 441 345 48 33 chr3 30121932 30122268 -197402310 - HAL1 LINE L1 -878 1629 1289 233 254 0 16 chr3 30124510 30124573 -197400005 + MIR SINE MIR 200 261 -1 242 132 19 0 chr3 30124612 30124665 -197399913 + GA-rich Low_complexity Low_complexity 4 57 0 228 167 0 0 chr3 30125155 30125203 -197399375 + GA-rich Low_complexity Low_complexity 1 48 0 243 157 0 0 chr3 30125410 30125461 -197399117 + (TAA)n Simple_repeat Simple_repeat 3 53 0 438 298 21 21 chr3 30125556 30125697 -197398881 - MIR SINE MIR -116 146 6 375 287 17 29 chr3 30126482 30126656 -197397922 + GA-rich Low_complexity Low_complexity 3 174 0 1105 63 0 0 chr3 30127249 30127391 -197397187 - AluY SINE Alu -1 310 169 282 178 55 41 chr3 30127835 30127908 -197396670 - MIR SINE MIR -98 164 91 183 306 0 20 chr3 30128062 30128111 -197396467 - L2 LINE L2 -211 3061 3014 1794 127 102 0 chr3 30128203 30128486 -197396092 + AluSx SINE Alu 1 312 0 584 282 66 11 chr3 30129044 30129317 -197395261 + AluSq SINE Alu 21 308 -5 330 275 183 0 chr3 30130189 30130320 -197394258 - MLT2E LTR ERVL -5 623 469 460 298 151 24 chr3 30130430 30130682 -197393896 - MLT2E LTR ERVL -310 318 35 869 260 9 22 chr3 30130704 30130927 -197393651 + MER58A DNA MER1_type 2 221 -3 196 298 18 0 chr3 30131021 30131078 -197393500 + L2 LINE L2 3207 3264 -8 508 344 13 0 chr3 30131345 30131502 -197393076 - L2 LINE L2 -261 3052 2894 10345 129 31 19 chr3 30131715 30134281 -197390297 - L1PA10 LINE L1 -3 6480 3891 12242 203 11 29 chr3 30134281 30137280 -197387298 - L1PA10 LINE L1 -2790 3671 714 225 0 0 0 chr3 30137280 30137305 -197387273 + (CTGTG)n Simple_repeat Simple_repeat 1 25 0 12242 203 11 29 chr3 30137305 30137404 -197387174 - L1PA10 LINE L1 -5747 714 615 828 290 34 0 chr3 30138166 30138408 -197386170 - MIR SINE MIR -6 256 8 713 249 103 33 chr3 30138720 30139021 -197385557 - L1ME4a LINE L1 -252 5869 5548 459 282 42 7 chr3 30139475 30139617 -197384961 - Charlie8 DNA MER1_type -2186 231 85 1273 218 24 85 chr3 30140716 30141138 -197383440 - MSTD LTR MaLR 0 396 1 201 268 175 0 chr3 30141903 30142000 -197382578 + L2 LINE L2 2576 2689 -625 2941 176 95 3 chr3 30142014 30142644 -197381934 - L1MB5 LINE L1 -1 6173 5486 754 327 55 3 chr3 30142649 30143009 -197381569 + L2 LINE L2 2683 3066 -247 3727 154 22 29 chr3 30143391 30144118 -197380460 - L1MB2 LINE L1 0 6171 5450 497 268 70 47 chr3 30144440 30144653 -197379925 + L2 LINE L2 3091 3308 -5 204 188 0 0 chr3 30144797 30144861 -197379717 + (TA)n Simple_repeat Simple_repeat 2 65 0 186 279 72 81 chr3 30144903 30145014 -197379564 + L2 LINE L2 3146 3255 -58 1610 162 1 2 chr3 30145035 30145510 -197379068 - L1P5 LINE L1 -646 5505 5031 3244 93 32 2 chr3 30145515 30145986 -197378592 - L1PA13 LINE L1 -4 6159 5675 1605 50 0 0 chr3 30146002 30146202 -197378376 - L1PA4 LINE L1 0 6155 5956 2450 81 52 8 chr3 30146203 30146584 -197377994 - L1PA13 LINE L1 -499 5664 5267 * 5925 78 6 6 chr3 30146573 30147377 -197377201 - L1PA7 LINE L1 -2 6152 5349 30830 125 15 40 chr3 30147477 30152845 -197371733 - L1PA7 LINE L1 -910 5236 2 3053 211 4 44 chr3 30152840 30153639 -197370939 - L1 LINE L1 -1101 5045 4279 * 7278 142 11 15 chr3 30154551 30156938 -197367640 - L1MA1 LINE L1 0 6302 3928 2490 205 2 0 chr3 30157141 30157657 -197366921 - L1 LINE L1 -819 5327 4811 2133 178 3 18 chr3 30157657 30158000 -197366578 - MER1B DNA MER1_type 0 339 2 773 150 0 0 chr3 30158000 30158133 -197366445 - L1 LINE L1 -1328 4818 4686 644 177 0 0 chr3 30158120 30158244 -197366334 - L1 LINE L1 -2180 3966 3843 * 1919 228 6 29 chr3 30158333 30158846 -197365732 - L1 LINE L1 -2275 3871 3371 6023 171 31 1 chr3 30158863 30159283 -197365295 + L1PB1 LINE L1 3970 4376 -1804 234 0 0 0 chr3 30159283 30159309 -197365269 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 6023 171 31 1 chr3 30159309 30160657 -197363921 + L1PB1 LINE L1 4376 5811 -369 180 77 0 0 chr3 30160657 30160683 -197363895 + (TA)n Simple_repeat Simple_repeat 2 27 0 6023 171 31 1 chr3 30160683 30161065 -197363513 + L1PB1 LINE L1 5811 6180 0 15073 175 32 5 chr3 30161065 30163244 -197361334 - L1 LINE L1 -1436 6129 4011 2291 119 31 19 chr3 30163244 30163604 -197360974 - THE1B LTR MaLR 0 364 1 15073 175 32 5 chr3 30163604 30166480 -197358098 - L1 LINE L1 -3554 4011 943 1227 236 43 28 chr3 30166480 30166806 -197357772 + MLT1C LTR MaLR 134 464 -3 5371 239 26 42 chr3 30166808 30168640 -197355938 + L1MC1 LINE L1 2908 4710 -1436 313 192 199 19 chr3 30168740 30168896 -197355682 + L1ME1 LINE L1 1645 1828 -4712 1755 226 53 24 chr3 30168902 30169393 -197355185 - MLT1D LTR MaLR 0 505 1 5319 170 52 4 chr3 30169432 30170529 -197354049 + L1MC1 LINE L1 5186 6333 0 276 200 31 0 chr3 30170523 30170588 -197353990 + L1ME1 LINE L1 1861 1927 -4613 * 837 260 44 12 chr3 30170571 30170890 -197353688 + L1ME1 LINE L1 4541 4869 -1671 3063 235 69 10 chr3 30170895 30172346 -197352232 + L1ME1 LINE L1 5009 6541 -19 2272 83 0 3 chr3 30172475 30172764 -197351814 - AluSg1 SINE Alu -21 288 1 194 312 73 83 chr3 30172796 30172879 -197351699 + L2 LINE L2 2692 2774 -540 329 93 19 0 chr3 30172879 30172933 -197351645 + (CA)n Simple_repeat Simple_repeat 2 56 0 194 312 73 83 chr3 30172933 30173067 -197351511 + L2 LINE L2 2774 2907 -407 198 0 0 0 chr3 30173112 30173134 -197351444 + (T)n Simple_repeat Simple_repeat 1 22 0 247 261 207 27 chr3 30173222 30173333 -197351245 + L2 LINE L2 3183 3313 0 985 196 168 9 chr3 30173486 30173914 -197350664 - Charlie1 DNA MER1_type 0 2761 1 343 259 69 52 chr3 30174163 30174337 -197350241 + MER5B DNA MER1_type 2 178 0 834 220 12 6 chr3 30174573 30174746 -197349832 + MER45A DNA AcHobo 1 174 -4 470 282 82 18 chr3 30175226 30175396 -197349182 - LTR33 LTR ERVL -315 206 26 995 354 22 22 chr3 30175720 30176212 -197348366 - ERVL LTR ERVL -522 5242 4751 282 284 0 0 chr3 30176218 30176292 -197348286 + (TATATG)n Simple_repeat Simple_repeat 2 75 0 432 184 71 158 chr3 30177166 30177628 -197346950 - L1MC5 LINE L1 -62 7899 7478 516 221 16 16 chr3 30177634 30177761 -197346817 - L1MA4 LINE L1 -39 6261 6135 823 243 104 47 chr3 30177782 30178185 -197346393 - L1MC5 LINE L1 -465 7496 7071 588 297 53 42 chr3 30178197 30178460 -197346118 - L1MC4a LINE L1 -1068 6740 6475 438 250 52 0 chr3 30178480 30178616 -197345962 + LTR67 LTR ERVL 408 550 -7 214 338 14 0 chr3 30179800 30179874 -197344704 - L2 LINE L2 -8 3305 3231 4027 134 16 9 chr3 30181377 30182046 -197342532 + L1MC1 LINE L1 5659 6332 -1 1311 122 81 0 chr3 30182084 30182305 -197342273 + MSTA LTR MaLR 2 240 -188 358 171 0 49 chr3 30182303 30182385 -197342193 + AluJb SINE Alu 57 134 -168 * 21470 153 29 16 chr3 30182398 30183747 -197340831 - L1 LINE L1 -3484 4081 2752 186 43 0 0 chr3 30183747 30183770 -197340808 + (TC)n Simple_repeat Simple_repeat 2 24 0 21470 153 29 16 chr3 30183770 30186431 -197338147 - L1 LINE L1 -4813 2752 19 295 310 88 32 chr3 30187837 30188053 -197336525 - MER102b DNA MER1_type -28 313 86 218 322 33 22 chr3 30188589 30188679 -197335899 + MER5A DNA MER1_type 77 167 -22 * 290 279 13 13 chr3 30188608 30188687 -197335891 - MER5A DNA MER1_type -85 104 26 24 32 0 0 chr3 30189158 30189189 -197335389 + AT_rich Low_complexity Low_complexity 1 31 0 3613 263 40 57 chr3 30189353 30190869 -197333709 - L2 LINE L2 0 3313 1826 315 341 46 17 chr3 30191865 30192038 -197332540 - MIR SINE MIR -20 242 65 366 299 119 55 chr3 30192345 30192730 -197331848 + L2 LINE L2 98 507 -2807 301 355 9 0 chr3 30192861 30192968 -197331610 + L2 LINE L2 550 657 -2657 1290 203 126 54 chr3 30194113 30194462 -197330116 - MLT1B LTR MaLR -16 374 1 1005 173 23 45 chr3 30194633 30194853 -197329725 + MER20 DNA MER1_type 4 218 -1 382 327 149 30 chr3 30194900 30195236 -197329342 + L2 LINE L2 2236 2611 -703 333 234 43 0 chr3 30195412 30195453 -197329125 + MER94 DNA DNA 9 47 -87 438 79 0 0 chr3 30195453 30195516 -197329062 + (TG)n Simple_repeat Simple_repeat 1 63 0 333 234 43 0 chr3 30195516 30195568 -197329010 + MER94 DNA DNA 47 106 -28 3872 126 62 16 chr3 30195803 30196486 -197328092 + L1MA2 LINE L1 5546 6259 -45 15469 36 1 0 chr3 30196486 30199122 -197325456 + L1PA3 LINE L1 3516 6155 0 189 0 0 0 chr3 30199128 30199149 -197325429 + (CA)n Simple_repeat Simple_repeat 2 22 0 1389 74 0 0 chr3 30199150 30199326 -197325252 + MER1A DNA MER1_type 252 427 -102 263 140 18 0 chr3 30199345 30199402 -197325176 + L1MA3 LINE L1 6246 6303 -2 335 132 0 0 chr3 30200094 30200147 -197324431 - MLT2B1 LTR ERVL -3 517 465 2351 191 4 43 chr3 30200227 30200694 -197323884 - MLT2B1 LTR ERVL -71 449 1 31 26 0 0 chr3 30202368 30202406 -197322172 + AT_rich Low_complexity Low_complexity 1 38 0 5274 128 41 6 chr3 30202756 30203705 -197320873 - L1PB3 LINE L1 -7 6147 5164 2336 222 63 3 chr3 30203706 30204274 -197320304 - MER97a DNA MER1_type? -46 848 247 2537 291 20 11 chr3 30204284 30205128 -197319450 + L1MEc LINE L1 37 888 -5508 1915 157 0 0 chr3 30205129 30205410 -197319168 + AluJo SINE Alu 1 281 -31 212 0 36 0 chr3 30205415 30205443 -197319135 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1148 280 9 26 chr3 30205448 30205791 -197318787 - L1M4 LINE L1 -5515 1027 691 323 300 0 22 chr3 30205792 30205882 -197318696 - L1MEc LINE L1 -4608 1788 1701 267 31 0 0 chr3 30205951 30205983 -197318595 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 270 0 0 0 chr3 30205982 30206012 -197318566 + (GA)n Simple_repeat Simple_repeat 2 31 0 1977 115 4 0 chr3 30206012 30206282 -197318296 - AluSx SINE Alu -39 273 3 1964 150 7 3 chr3 30206300 30206607 -197317971 + AluSx SINE Alu 1 308 -4 336 308 15 15 chr3 30206914 30207047 -197317531 + C-rich Low_complexity Low_complexity 1 133 0 1194 256 75 10 chr3 30207226 30207757 -197316821 + L1MB7 LINE L1 1210 1772 -4833 700 210 6 6 chr3 30207748 30207924 -197316654 + L1MB7 LINE L1 2874 3049 -3595 * 1990 214 106 67 chr3 30207921 30209399 -197315179 + L1MEc LINE L1 930 3556 -2659 2007 244 75 11 chr3 30209417 30210174 -197314404 + L1MEc LINE L1 4227 5032 -1183 304 183 0 14 chr3 30210191 30210262 -197314316 + L1MEc LINE L1 5157 5226 -989 1703 252 35 13 chr3 30210459 30211078 -197313500 + L1MB7 LINE L1 4832 5464 -1180 3526 205 38 37 chr3 30211092 30212034 -197312544 + L1MB7 LINE L1 5586 6525 -157 957 190 57 0 chr3 30212034 30212245 -197312333 + L1MA9 LINE L1 6085 6307 -5 3526 205 38 37 chr3 30212245 30212381 -197312197 + L1MB7 LINE L1 6525 6659 -23 298 271 114 12 chr3 30212536 30212791 -197311787 + L1M4 LINE L1 3439 3719 -2427 1535 208 41 36 chr3 30212800 30213219 -197311359 - LTR52 LTR ERVL 0 421 1 630 302 105 24 chr3 30213326 30214504 -197310074 + L1M4 LINE L1 3742 5026 -1120 564 301 29 6 chr3 30214583 30214756 -197309822 - LTR16A LTR ERVL -242 208 32 21 36 0 0 chr3 30216667 30216695 -197307883 + AT_rich Low_complexity Low_complexity 1 28 0 4859 155 31 2 chr3 30217043 30217913 -197306665 - L1P LINE L1 -5240 906 12 9379 82 18 30 chr3 30218206 30219696 -197304882 + L1P LINE L1 910 2381 -3765 600 88 0 0 chr3 30219797 30219877 -197304701 + AluY SINE Alu 214 293 -18 838 145 0 0 chr3 30219878 30219995 -197304583 - AluJo/FLAM SINE Alu -185 117 1 348 218 145 8 chr3 30220003 30220127 -197304451 + L1MDa LINE L1 1798 1938 -4602 2081 77 4 0 chr3 30220132 30220393 -197304185 + AluY SINE Alu 6 267 -44 22836 73 3 2 chr3 30220641 30224523 -197300055 + L1PA6 LINE L1 2250 6145 -9 547 310 17 6 chr3 30224922 30225096 -197299482 + LTR16A LTR ERVL 32 207 -243 2840 155 63 15 chr3 30225439 30225962 -197298616 + MER44D DNA MER2_type 1 603 -2 947 201 11 0 chr3 30226482 30226666 -197297912 - MER5A DNA MER1_type 0 189 4 218 281 125 10 chr3 30226922 30227018 -197297560 + L2 LINE L2 2387 2493 -821 23 54 0 0 chr3 30227539 30227576 -197297002 + AT_rich Low_complexity Low_complexity 1 37 0 437 234 97 77 chr3 30228076 30228324 -197296254 + MER112 DNA MER1_type 1 253 -3 479 240 74 8 chr3 30228896 30229017 -197295561 - L2 LINE L2 0 3313 3185 347 194 0 0 chr3 30229501 30229573 -197295005 - HAL1b LINE L1 -742 606 535 * 2785 59 4 3 chr3 30229566 30230090 -197294488 - L1P2 LINE L1 -630 5524 5000 4046 53 4 0 chr3 30230090 30230632 -197293946 + L1P2 LINE L1 4435 4978 -1168 558 211 54 12 chr3 30231332 30231498 -197293080 - L1MA10 LINE L1 -1 6333 6161 409 149 0 0 chr3 30231507 30231574 -197293004 + L1MA7 LINE L1 5831 5897 -394 2645 43 3 0 chr3 30233399 30233704 -197290874 - AluY SINE Alu -5 306 1 209 298 95 0 chr3 30233819 30233903 -197290675 - L3 LINE CR1 -119 1458 1367 400 209 29 38 chr3 30234207 30234312 -197290266 + MIR SINE MIR 141 244 -18 854 197 36 0 chr3 30234683 30234876 -197289702 - MER3 DNA MER1_type -8 201 2 197 330 143 9 chr3 30235284 30235396 -197289182 + MIR SINE MIR 82 208 -54 187 301 97 11 chr3 30235498 30235591 -197288987 + L3 LINE CR1 1379 1479 -98 27 0 0 0 chr3 30236339 30236366 -197288212 + AT_rich Low_complexity Low_complexity 1 27 0 199 228 22 0 chr3 30236893 30236985 -197287593 + (TCCA)n Simple_repeat Simple_repeat 4 97 0 562 342 64 40 chr3 30237766 30238284 -197286294 + L2 LINE L2 2347 2876 -438 324 350 56 56 chr3 30238912 30239235 -197285343 + L2 LINE L2 2941 3263 -9 551 206 3 31 chr3 30240800 30240927 -197283651 + MER5A DNA MER1_type 1 114 -64 1304 104 0 16 chr3 30240998 30241181 -197283397 + AluSg/x SINE Alu 132 311 -1 355 344 62 33 chr3 30242173 30242414 -197282164 + L2 LINE L2 2565 2812 -502 413 276 128 68 chr3 30242442 30242808 -197281770 - L2 LINE L2 0 3313 2926 1841 156 113 43 chr3 30242985 30243383 -197281195 - MSTB LTR MaLR 0 426 1 398 265 86 83 chr3 30243578 30243891 -197280687 + MLT1H LTR MaLR 220 533 -16 2797 103 92 2 chr3 30244129 30244575 -197280003 + LTR19A LTR ERV1 1 486 0 26 30 0 0 chr3 30244593 30244626 -197279952 + AT_rich Low_complexity Low_complexity 1 33 0 241 315 76 11 chr3 30244660 30244752 -197279826 + L2 LINE L2 3163 3260 -12 2061 116 73 14 chr3 30245846 30246200 -197278378 + THE1C LTR MaLR 1 375 0 413 241 203 0 chr3 30247039 30247172 -197277406 + LTR16C LTR ERVL 317 476 -15 1649 161 38 10 chr3 30247276 30247567 -197277011 - AluJo SINE Alu -7 305 7 187 318 0 0 chr3 30248740 30248784 -197275794 + MIR SINE MIR 196 239 -23 219 359 57 0 chr3 30248810 30248916 -197275662 - L2 LINE L2 -224 3048 2937 40212 38 23 1 chr3 30249217 30255236 -197269342 - L1PA3 LINE L1 0 6155 4 2015 75 4 18 chr3 30256256 30256534 -197268044 - AluY SINE Alu -9 302 29 261 0 0 0 chr3 30257337 30257366 -197267212 + (T)n Simple_repeat Simple_repeat 1 29 0 205 325 124 35 chr3 30257774 30257943 -197266635 - MIR3 SINE MIR -7 201 18 2321 107 3 0 chr3 30258653 30258953 -197265625 - AluSp SINE Alu -11 302 2 674 295 39 47 chr3 30259117 30259476 -197265102 + LTR16A LTR ERVL 7 362 -88 1031 308 79 16 chr3 30259553 30260210 -197264368 - L2 LINE L2 -1 3312 2617 1778 263 71 43 chr3 30260707 30260868 -197263710 + L1M4 LINE L1 3297 3452 -2694 8452 87 15 1 chr3 30260868 30262836 -197261742 - L1PA7 LINE L1 -1 6153 4162 1778 263 71 43 chr3 30262836 30263462 -197261116 + L1M4 LINE L1 3452 4106 -2040 4738 201 81 112 chr3 30263473 30264744 -197259834 + L1MC3 LINE L1 5961 7191 -594 387 256 0 20 chr3 30264744 30264844 -197259734 + MLT1F1 LTR MaLR 35 133 -442 4738 201 81 112 chr3 30264844 30265422 -197259156 + L1MC3 LINE L1 7191 7785 0 403 276 117 54 chr3 30266076 30266315 -197258263 - MIR SINE MIR 0 262 9 7869 171 10 5 chr3 30266382 30266460 -197258118 + L1PB1 LINE L1 3710 3786 -2365 1968 147 0 17 chr3 30266460 30266759 -197257819 + AluSx SINE Alu 1 294 -18 7869 171 10 5 chr3 30266759 30269118 -197255460 + L1PB1 LINE L1 3786 6151 0 221 98 24 0 chr3 30269348 30269389 -197255189 + (TA)n Simple_repeat Simple_repeat 1 42 0 31 26 0 0 chr3 30269702 30269740 -197254838 + AT_rich Low_complexity Low_complexity 1 38 0 26 64 0 0 chr3 30270518 30270565 -197254013 + AT_rich Low_complexity Low_complexity 1 47 0 5778 147 71 35 chr3 30271195 30272383 -197252195 + Tigger3b DNA MER2_type 2 1231 0 186 333 0 28 chr3 30273493 30273565 -197251013 + L2 LINE L2 3232 3301 -12 1069 246 173 43 chr3 30274865 30275264 -197249314 + LTR16B LTR ERVL 1 451 -13 981 268 101 36 chr3 30275641 30276056 -197248522 + MLT1J2 LTR MaLR 1 442 -8 295 277 141 5 chr3 30276437 30276621 -197247957 - MER41B LTR ERV1 -299 336 128 460 248 63 136 chr3 30276695 30277078 -197247500 + MLT1H LTR MaLR 15 369 -221 2658 42 0 0 chr3 30278141 30278450 -197246128 + AluY SINE Alu 1 309 -2 688 274 159 36 chr3 30279003 30279531 -197245047 + MLT1G1 LTR MaLR 1 555 0 555 293 35 47 chr3 30279581 30279813 -197244765 - MIR SINE MIR -13 249 21 23 33 0 0 chr3 30279817 30279847 -197244731 + AT_rich Low_complexity Low_complexity 1 30 0 424 242 11 0 chr3 30280607 30280702 -197243876 - Zaphod DNA AcHobo 0 4031 3936 832 298 110 43 chr3 30280959 30281449 -197243129 + MLT1G1 LTR MaLR 73 595 0 206 337 102 20 chr3 30281499 30281597 -197242981 + MIR SINE MIR 27 132 -130 1649 181 22 0 chr3 30283973 30284293 -197240285 - L1P LINE L1 -1229 4917 4591 5830 110 17 2 chr3 30284294 30285469 -197239109 + L1PA16 LINE L1 4965 6157 -9 31 44 0 0 chr3 30285483 30285528 -197239050 + AT_rich Low_complexity Low_complexity 1 45 0 190 230 150 110 chr3 30285616 30285716 -197238862 + MER5A DNA MER1_type 6 109 -80 1967 128 0 0 chr3 30286262 30286544 -197238034 + AluY SINE Alu 30 311 0 1418 249 129 42 chr3 30287045 30287588 -197236990 - MLT1G LTR MaLR 0 590 1 25 31 0 0 chr3 30287923 30287955 -197236623 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 30288812 30288833 -197235745 + AT_rich Low_complexity Low_complexity 1 21 0 915 221 133 17 chr3 30289219 30289459 -197235119 - L1PA16 LINE L1 -3 6163 5896 301 301 0 0 chr3 30289895 30289978 -197234600 - L1MC4 LINE L1 -1340 6702 6620 352 263 54 71 chr3 30291007 30291231 -197233347 + L1MCa LINE L1 16 235 -6307 1688 240 38 45 chr3 30291408 30292287 -197232291 + L1M4 LINE L1 497 1348 -5198 1018 222 183 22 chr3 30292308 30292723 -197231855 + L1MCa LINE L1 261 742 -5902 1992 148 56 6 chr3 30292723 30293062 -197231516 - MER47A DNA MER2_type 0 366 11 2008 137 57 17 chr3 30293062 30293412 -197231166 - THE1B LTR MaLR 0 364 1 11465 91 15 5 chr3 30293412 30294976 -197229602 - THE1B-int LTR MaLR 0 1580 1 2251 107 51 28 chr3 30294976 30295332 -197229246 - THE1B LTR MaLR 0 364 1 2838 203 37 39 chr3 30295346 30296219 -197228359 + L1MCb LINE L1 470 1341 -4849 * 2965 245 80 17 chr3 30296206 30298136 -197226442 + L1MCb LINE L1 1608 3540 -3024 1480 219 12 3 chr3 30298183 30298526 -197226052 + L1PA16 LINE L1 5804 6149 -17 22 0 0 0 chr3 30298526 30298548 -197226030 + AT_rich Low_complexity Low_complexity 1 22 0 1484 207 63 107 chr3 30298573 30299180 -197225398 + L1MC4 LINE L1 7474 7995 0 6888 228 40 38 chr3 30299190 30300488 -197224090 + L1MB8 LINE L1 3564 4866 -1736 2001 122 32 102 chr3 30300488 30300891 -197223687 + THE1C LTR MaLR 1 375 0 6888 228 40 38 chr3 30300891 30302051 -197222527 + L1MB8 LINE L1 4866 6022 -580 1655 107 8 0 chr3 30302051 30302293 -197222285 - L1MA4 LINE L1 -424 5876 5633 2220 172 16 5 chr3 30302293 30302718 -197221860 + L1MA4 LINE L1 5870 6299 -1 1338 282 117 8 chr3 30302735 30303264 -197221314 + L1MB8 LINE L1 6010 6596 0 315 340 75 37 chr3 30303389 30303872 -197220706 + L2 LINE L2 1490 1990 -1324 360 353 20 25 chr3 30304555 30304756 -197219822 + L2 LINE L2 2302 2501 -813 203 152 0 0 chr3 30304817 30304850 -197219728 + (TG)n Simple_repeat Simple_repeat 2 34 0 327 330 94 0 chr3 30305762 30305953 -197218625 + MIR SINE MIR 8 216 -46 344 242 0 0 chr3 30306014 30306080 -197218498 + MIR SINE MIR 197 262 0 1941 141 29 35 chr3 30306845 30307222 -197217356 + THE1C LTR MaLR 1 375 0 495 280 75 39 chr3 30310427 30310771 -197213807 + LTR16A1 LTR ERVL 115 453 -4 349 267 11 11 chr3 30312563 30312653 -197211925 - L2 LINE L2 -24 3289 3200 426 213 115 0 chr3 30312699 30312821 -197211757 - MIR SINE MIR -25 237 102 40574 34 23 2 chr3 30312861 30318886 -197205692 + L1PA2 LINE L1 3 6155 0 561 265 5 7 chr3 30319152 30319354 -197205224 - MLT2F LTR ERVL -409 254 9 2672 157 65 4 chr3 30319777 30320301 -197204277 + L1MB3 LINE L1 5626 6181 -2 1312 127 53 4 chr3 30320461 30320706 -197203872 + L1MA5 LINE L1 6040 6296 -4 1633 186 128 53 chr3 30320710 30321272 -197203306 - MER67D LTR ERV1 -4 399 25 422 138 75 0 chr3 30321355 30321435 -197203143 - LTR54 LTR ERV1 -424 86 1 521 233 27 14 chr3 30321663 30321809 -197202769 - MER57A-int LTR ERV1 -6427 1693 1546 1641 172 72 9 chr3 30322066 30322385 -197202193 - MER44D DNA MER2_type 0 609 1 1436 231 20 32 chr3 30322405 30322847 -197201731 - MER57A-int LTR ERV1 -1784 5753 5317 2054 122 0 49 chr3 30323893 30324221 -197200357 - AluSx SINE Alu 0 312 1 938 204 0 6 chr3 30325215 30325382 -197199196 - FRAM SINE Alu 0 166 1 617 312 26 13 chr3 30325558 30325789 -197198789 - MER57A-int LTR ERV1 -7290 247 14 439 250 56 12 chr3 30325803 30325963 -197198615 - MER57A LTR ERV1 0 403 237 368 158 73 24 chr3 30326046 30326128 -197198450 - LTR54 LTR ERV1 -424 86 1 465 163 0 0 chr3 30326128 30326208 -197198370 - MER67D LTR ERV1 -434 80 1 1132 239 114 74 chr3 30326718 30327242 -197197336 + L1ME LINE L1 309 853 -5687 1524 206 118 73 chr3 30327249 30327799 -197196779 + L1MD2 LINE L1 5768 6342 -17 455 299 95 9 chr3 30327896 30328267 -197196311 + L1ME LINE L1 2532 2969 -3571 570 253 17 34 chr3 30328492 30328725 -197195853 + L1MB8 LINE L1 5944 6172 -6 366 191 29 19 chr3 30328732 30328837 -197195741 + L1MCc LINE L1 52 157 -6266 281 167 17 0 chr3 30328836 30328896 -197195682 + L1MCc LINE L1 1135 1195 -5228 * 900 270 76 36 chr3 30328989 30329237 -197195341 + L1ME LINE L1 4504 4741 -1823 1960 140 20 0 chr3 30329237 30329529 -197195049 + AluSx SINE Alu 1 298 -14 900 270 76 36 chr3 30329529 30329564 -197195014 + L1ME LINE L1 4741 4773 -1791 2274 150 45 26 chr3 30329564 30329984 -197194594 - MSTA LTR MaLR 0 428 1 9074 153 64 4 chr3 30329984 30331541 -197193037 - MSTA-int LTR MaLR 0 1651 1 2068 185 33 33 chr3 30331541 30331969 -197192609 - MSTA LTR MaLR 0 428 1 900 270 76 36 chr3 30331969 30333190 -197191388 + L1ME LINE L1 4772 6193 -371 623 235 25 62 chr3 30333238 30333481 -197191097 + MER106A DNA MER1_type 2 235 -1 22 56 0 0 chr3 30334006 30334042 -197190536 + AT_rich Low_complexity Low_complexity 1 36 0 1244 287 90 36 chr3 30336327 30336909 -197187669 + L2 LINE L2 2456 3105 -208 524 237 34 0 chr3 30336909 30337027 -197187551 + FLAM_A SINE Alu 1 122 -11 1244 287 90 36 chr3 30337027 30337248 -197187330 + L2 LINE L2 3105 3313 0 24095 108 11 16 chr3 30338562 30342506 -197182072 + L1PA7 LINE L1 770 4694 -1452 6881 64 3 0 chr3 30342511 30343911 -197180667 + L1PA7 LINE L1 4758 6161 0 546 230 117 42 chr3 30343987 30344200 -197180378 + MIR SINE MIR 34 262 0 224 324 9 63 chr3 30344437 30344548 -197180030 + L2 LINE L2 3168 3272 0 351 331 5 65 chr3 30344590 30344774 -197179804 - L2 LINE L2 -234 3038 2866 860 198 22 127 chr3 30345606 30345969 -197178609 + LTR39 LTR ERV1 1 325 -458 633 221 13 7 chr3 30346023 30346177 -197178401 + LTR39 LTR ERV1 599 753 -30 367 283 182 25 chr3 30346319 30346517 -197178061 - MIR SINE MIR -29 233 5 1330 129 27 2 chr3 30346519 30346780 -197177798 - LTR54 LTR ERV1 0 510 212 25 31 0 0 chr3 30347027 30347059 -197177519 + AT_rich Low_complexity Low_complexity 1 32 0 3863 155 12 29 chr3 30347554 30348272 -197176306 - MER50 LTR ERV1 -28 706 1 1662 182 10 23 chr3 30348337 30348639 -197175939 - AluSg SINE Alu -12 298 1 712 203 6 0 chr3 30348999 30349162 -197175416 - L1P LINE L1 -1047 5099 4936 402 161 0 23 chr3 30349162 30349234 -197175344 + L1PA16 LINE L1 6081 6165 -1 2235 105 3 0 chr3 30349915 30350210 -197174368 - AluSx SINE Alu -16 296 1 626 197 41 14 chr3 30351516 30351663 -197172915 - L1MC3 LINE L1 -445 7340 7190 352 222 22 11 chr3 30351663 30351753 -197172825 - MLT1F1 LTR MaLR -442 125 35 2937 192 20 113 chr3 30351753 30352981 -197171597 - L1MC3 LINE L1 -688 7134 6006 1468 261 76 28 chr3 30353037 30353655 -197170923 - L1M4 LINE L1 -2042 4104 3457 8893 77 0 0 chr3 30353661 30355646 -197168932 + L1PA3 LINE L1 4162 6155 0 191 368 57 0 chr3 30355947 30356053 -197168525 + L2 LINE L2 2937 3048 -224 187 318 0 0 chr3 30356079 30356123 -197168455 - MIR SINE MIR -23 239 196 1649 161 38 10 chr3 30357293 30357584 -197166994 + AluJo SINE Alu 7 305 -7 413 241 203 0 chr3 30357688 30357821 -197166757 - LTR16C LTR ERVL -15 476 317 2061 116 73 14 chr3 30358660 30359014 -197165564 - THE1C LTR MaLR 0 375 1 241 315 76 11 chr3 30360108 30360200 -197164378 - L2 LINE L2 -12 3260 3163 26 30 0 0 chr3 30360234 30360267 -197164311 + AT_rich Low_complexity Low_complexity 1 33 0 2797 103 92 2 chr3 30360285 30360731 -197163847 - LTR19A LTR ERV1 0 486 1 398 265 86 83 chr3 30360969 30361282 -197163296 - MLT1H LTR MaLR -16 533 220 1841 156 113 43 chr3 30361477 30361875 -197162703 + MSTB LTR MaLR 1 426 0 884 186 52 4 chr3 30362075 30362306 -197162272 - AluY SINE Alu -41 270 29 252 0 0 0 chr3 30363108 30363136 -197161442 + (T)n Simple_repeat Simple_repeat 1 28 0 213 325 124 35 chr3 30363544 30363713 -197160865 - MIR3 SINE MIR -7 201 18 2322 110 3 0 chr3 30364423 30364723 -197159855 - AluSp SINE Alu -11 302 2 564 284 41 50 chr3 30364905 30365246 -197159332 + LTR16A LTR ERVL 25 362 -88 973 298 85 22 chr3 30365324 30365979 -197158599 - L2 LINE L2 -2 3311 2617 376 300 42 33 chr3 30366386 30366629 -197157949 + L1ME LINE L1 3211 3455 -2691 6811 62 6 2 chr3 30366638 30368023 -197156555 - L1PA7 LINE L1 -1 6153 4758 23943 109 11 16 chr3 30368028 30371971 -197152607 - L1PA7 LINE L1 -1452 4694 770 7613 147 41 33 chr3 30372869 30374379 -197150199 + L1P LINE L1 11 1532 -4614 8030 111 9 9 chr3 30374522 30375936 -197148642 - L1P3 LINE L1 -3903 2558 1139 388 248 111 0 chr3 30376277 30376394 -197148184 + MIR SINE MIR 99 228 -34 2086 132 0 10 chr3 30376667 30376971 -197147607 + AluSx SINE Alu 12 312 0 413 303 17 52 chr3 30377735 30378025 -197146553 + L1PA12 LINE L1 2 281 -7300 1413 139 31 38 chr3 30378781 30379068 -197145510 - THE1C LTR MaLR 0 375 91 7722 84 8 3 chr3 30379182 30380318 -197144260 + L1P LINE L1 3404 4545 -1601 514 355 18 0 chr3 30380581 30380798 -197143780 + MIR SINE MIR 15 235 -27 313 319 7 0 chr3 30381575 30381710 -197142868 + L1ME LINE L1 4900 5035 -1111 624 281 153 11 chr3 30381965 30382331 -197142247 + L1ME LINE L1 5354 5771 -393 2311 110 105 0 chr3 30382599 30382998 -197141580 + LTR7 LTR ERV1 1 441 -9 3186 118 5 50 chr3 30383283 30383317 -197141261 + L1P LINE L1 2095 2129 -4017 309 68 0 0 chr3 30383317 30383361 -197141217 + (TA)n Simple_repeat Simple_repeat 2 45 0 3186 118 5 50 chr3 30383361 30383382 -197141196 + L1P LINE L1 2129 2149 -3997 2660 87 0 6 chr3 30383382 30383748 -197140830 - L1PA5 LINE L1 -5 6149 5786 3186 118 5 50 chr3 30383748 30384293 -197140285 + L1P LINE L1 2149 2669 -3477 1794 172 14 8 chr3 30384667 30385327 -197139251 - L1PA5 LINE L1 -479 5684 5020 262 253 11 0 chr3 30385570 30385657 -197138921 + L1M4 LINE L1 2798 2885 -3964 3479 217 20 6 chr3 30385728 30386610 -197137968 + L1M4 LINE L1 2903 3797 -3051 848 164 20 40 chr3 30386781 30386982 -197137596 + MLT1B LTR MaLR 190 386 -4 195 298 131 0 chr3 30386986 30387070 -197137508 - MIR SINE MIR -126 136 42 217 267 89 11 chr3 30387171 30387261 -197137317 + MIR SINE MIR 47 143 -119 3274 188 21 4 chr3 30387964 30388715 -197135863 - L1 LINE L1 -1468 4678 3915 2020 296 67 20 chr3 30389106 30389920 -197134658 - L2 LINE L2 -237 3035 2174 2434 74 0 3 chr3 30390077 30390374 -197134204 + AluY SINE Alu 1 296 -15 2175 108 7 0 chr3 30390471 30390768 -197133810 + AluSx SINE Alu 1 299 -13 241 358 50 5 chr3 30391312 30391533 -197133045 + L1M4 LINE L1 4740 4970 -1878 2299 105 0 23 chr3 30391922 30392228 -197132350 - AluSg SINE Alu -11 299 1 1186 286 48 25 chr3 30392405 30392923 -197131655 - Tigger8 DNA MER2_type -126 540 11 445 271 30 56 chr3 30393002 30393322 -197131256 - MLT1F LTR MaLR -6 536 149 374 248 25 18 chr3 30393355 30393491 -197131087 - MLT1G3 LTR MaLR -349 200 8 1347 195 8 0 chr3 30393617 30393874 -197130704 + L1MC/D LINE L1 5374 5632 -712 419 145 13 0 chr3 30393879 30393955 -197130623 + L1MC1 LINE L1 6252 6328 -5 266 238 10 20 chr3 30394026 30394127 -197130451 + L1M4 LINE L1 5252 5351 -1497 342 324 10 0 chr3 30394186 30394288 -197130290 + MIR SINE MIR 157 259 -3 590 313 78 36 chr3 30394394 30394701 -197129877 - L2 LINE L2 -1538 1776 1457 201 328 15 0 chr3 30394728 30394795 -197129783 + MER5A DNA MER1_type 122 189 0 3885 112 28 39 chr3 30395163 30396260 -197128318 - L1PA11 LINE L1 -237 5937 4841 345 62 0 0 chr3 30396604 30396652 -197127926 + (TG)n Simple_repeat Simple_repeat 1 48 0 315 397 0 9 chr3 30397246 30397362 -197127216 + L2 LINE L2 3150 3264 -8 410 249 289 0 chr3 30397799 30398024 -197126554 + LTR16A1 LTR ERVL 168 457 0 827 292 4 6 chr3 30399353 30399592 -197124986 + MIR SINE MIR 13 247 -15 284 231 0 0 chr3 30399610 30399662 -197124916 - L2 LINE L2 -3 3310 3259 290 143 16 0 chr3 30399713 30399776 -197124802 + (ATG)n Simple_repeat Simple_repeat 3 66 0 640 298 21 29 chr3 30400259 30400497 -197124081 + MIR SINE MIR 13 248 -14 21 0 0 0 chr3 30400775 30400796 -197123782 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr3 30401276 30401315 -197123263 + AT_rich Low_complexity Low_complexity 1 39 0 5148 26 1 1 chr3 30401528 30402172 -197122406 - L1PA3 LINE L1 -894 5252 4605 7686 20 0 0 chr3 30402172 30403096 -197121482 + L1PA3 LINE L1 5260 6183 0 5472 23 0 0 chr3 30403173 30403871 -197120707 + L1PA3 LINE L1 5476 6173 0 1111 170 12 50 chr3 30404698 30404939 -197119639 - THE1B LTR MaLR -130 234 3 10967 95 12 9 chr3 30404941 30406351 -197118227 - THE1B-int LTR MaLR 0 1580 163 3223 76 30 11 chr3 30406351 30406787 -197117791 + MLT2A1 LTR ERVL 1 444 0 10967 95 12 9 chr3 30406787 30406951 -197117627 - THE1B-int LTR MaLR -1417 163 1 1975 146 32 46 chr3 30406951 30407320 -197117258 - THE1B LTR MaLR 0 364 1 13797 45 0 0 chr3 30407852 30409624 -197114954 - L1P LINE L1 -930 5216 3445 3329 66 0 0 chr3 30409624 30410038 -197114540 + L1PA5 LINE L1 5732 6154 0 843 180 195 7 chr3 30411195 30411467 -197113111 - MER33 DNA MER1_type 0 324 2 261 146 0 0 chr3 30411471 30411512 -197113066 - MER3 DNA MER1_type -165 44 4 213 240 36 167 chr3 30411566 30411758 -197112820 + MIR3 SINE MIR 23 189 -19 410 248 29 36 chr3 30412995 30413132 -197111446 - MLT1J2 LTR MaLR -51 399 264 432 212 77 53 chr3 30413157 30413327 -197111251 + MER58C DNA MER1_type 42 215 0 719 192 27 12 chr3 30413391 30413564 -197111014 - MLT1J1 LTR MaLR -289 222 6 1961 143 0 4 chr3 30413970 30414273 -197110305 + AluSc SINE Alu 1 302 0 490 333 48 26 chr3 30414375 30414606 -197109972 + MIR SINE MIR 26 261 -1 1104 280 45 47 chr3 30415250 30415653 -197108925 - LTR16C LTR ERVL -3 488 87 1365 215 107 57 chr3 30415793 30416281 -197108297 - MLT2B1 LTR ERVL -8 512 1 204 40 0 0 chr3 30417129 30417154 -197107424 + (TTA)n Simple_repeat Simple_repeat 1 25 0 2020 287 131 19 chr3 30417184 30418163 -197106415 - L2 LINE L2 -42 3271 2174 2434 74 0 3 chr3 30418320 30418617 -197105961 + AluY SINE Alu 1 296 -15 2410 98 3 0 chr3 30418714 30419021 -197105557 + AluSp SINE Alu 1 308 -5 225 0 0 0 chr3 30419021 30419046 -197105532 + (TA)n Simple_repeat Simple_repeat 1 25 0 649 283 20 16 chr3 30419115 30419366 -197105212 - L1ME LINE L1 -328 5793 5542 1396 100 273 9 chr3 30419455 30419686 -197104892 + AluSg1 SINE Alu 1 292 -17 496 330 0 36 chr3 30420034 30420228 -197104350 + MER5A DNA MER1_type 2 188 -1 23 0 0 0 chr3 30420625 30420648 -197103930 + AT_rich Low_complexity Low_complexity 1 23 0 735 225 39 0 chr3 30420838 30421016 -197103562 + MER5A DNA MER1_type 2 186 -3 623 192 70 32 chr3 30421020 30421176 -197103402 - MER5A DNA MER1_type -21 168 7 386 282 29 24 chr3 30421312 30421482 -197103096 + LTR16C LTR ERVL 309 479 -12 690 232 170 47 chr3 30423699 30424088 -197100490 - MER110 LTR ERV1 0 468 63 2139 128 10 7 chr3 30424832 30425137 -197099441 - AluSx SINE Alu -6 306 1 586 268 54 30 chr3 30426527 30426695 -197097883 - MER5B DNA MER1_type 0 178 7 1902 147 49 30 chr3 30426881 30427249 -197097329 - THE1C LTR MaLR 0 375 1 364 320 55 5 chr3 30428263 30428463 -197096115 - LTR16C LTR ERVL -101 390 181 272 345 0 43 chr3 30428482 30428598 -197095980 + MIR SINE MIR 22 132 -76 305 247 54 32 chr3 30428943 30429036 -197095542 - L2 LINE L2 0 3313 3219 450 259 47 75 chr3 30431795 30432050 -197092528 + LTR16A1 LTR ERVL 210 457 0 279 294 55 0 chr3 30432157 30432303 -197092275 + L1MC5 LINE L1 5805 5958 -1850 1846 145 93 3 chr3 30432325 30432670 -197091908 + MLT1B LTR MaLR 15 390 0 3677 245 10 22 chr3 30432674 30433935 -197090643 + L1M4 LINE L1 2787 4032 -2114 1683 221 113 35 chr3 30433996 30434688 -197089890 + L1MC5 LINE L1 6694 7439 -522 334 200 11 32 chr3 30434725 30434820 -197089758 + L1MEc LINE L1 1928 2020 -4376 4221 237 69 22 chr3 30434860 30435349 -197089229 + L1MEc LINE L1 2122 2587 -3628 1905 127 39 75 chr3 30435349 30435735 -197088843 + THE1C LTR MaLR 1 372 -3 4221 237 69 22 chr3 30435735 30436169 -197088409 + L1MEc LINE L1 2587 2999 -3216 2218 135 30 25 chr3 30436169 30436531 -197088047 - THE1B LTR MaLR 0 364 1 4221 237 69 22 chr3 30436531 30437291 -197087287 + L1MEc LINE L1 2999 3845 -2370 509 211 66 110 chr3 30437406 30437596 -197086982 + L1MC5 LINE L1 7610 7782 -179 2079 130 0 3 chr3 30437596 30437896 -197086682 + AluSx SINE Alu 1 299 -13 509 211 66 110 chr3 30437896 30438023 -197086555 + L1MC5 LINE L1 7782 7913 -48 39 0 0 0 chr3 30438032 30438071 -197086507 + AT_rich Low_complexity Low_complexity 1 39 0 209 358 11 32 chr3 30438343 30438438 -197086140 - L2 LINE L2 -6 3307 3215 750 213 46 51 chr3 30438634 30438850 -197085728 - MER58C DNA MER1_type 0 215 1 435 282 42 28 chr3 30440117 30440259 -197084319 - MIR SINE MIR -117 145 2 538 276 94 26 chr3 30440399 30440591 -197083987 - MIR SINE MIR -47 215 11 1361 115 15 10 chr3 30443951 30444151 -197080427 + AluSq SINE Alu 107 307 -6 3885 112 28 39 chr3 30444932 30446029 -197078549 - L1PA11 LINE L1 -237 5937 4841 327 65 0 0 chr3 30446373 30446419 -197078159 + (TG)n Simple_repeat Simple_repeat 1 46 0 315 397 0 9 chr3 30447013 30447129 -197077449 + L2 LINE L2 3150 3264 -8 410 249 289 0 chr3 30447566 30447791 -197076787 + LTR16A1 LTR ERVL 168 457 0 849 286 2 19 chr3 30449120 30449359 -197075219 + MIR SINE MIR 13 247 -15 284 231 0 0 chr3 30449377 30449429 -197075149 - L2 LINE L2 -3 3310 3259 290 143 16 0 chr3 30449480 30449543 -197075035 + (ATG)n Simple_repeat Simple_repeat 3 66 0 637 286 25 34 chr3 30450026 30450264 -197074314 + MIR SINE MIR 13 248 -14 21 0 0 0 chr3 30450542 30450563 -197074015 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr3 30451043 30451082 -197073496 + AT_rich Low_complexity Low_complexity 1 39 0 5136 28 1 1 chr3 30451295 30451939 -197072639 - L1PA3 LINE L1 -894 5252 4605 7658 21 0 0 chr3 30451939 30452859 -197071719 + L1PA3 LINE L1 5260 6179 0 5460 24 0 0 chr3 30452936 30453634 -197070944 + L1PA3 LINE L1 5476 6173 0 1111 170 12 50 chr3 30454461 30454702 -197069876 - THE1B LTR MaLR -130 234 3 10967 95 12 9 chr3 30454704 30456114 -197068464 - THE1B-int LTR MaLR 0 1580 163 3173 80 30 11 chr3 30456114 30456550 -197068028 + MLT2A1 LTR ERVL 1 444 0 10967 95 12 9 chr3 30456550 30456714 -197067864 - THE1B-int LTR MaLR -1417 163 1 1933 152 32 46 chr3 30456714 30457083 -197067495 - THE1B LTR MaLR 0 364 1 13832 43 0 0 chr3 30457615 30459387 -197065191 - L1P LINE L1 -930 5216 3445 3329 66 0 0 chr3 30459387 30459801 -197064777 + L1PA5 LINE L1 5732 6154 0 843 180 195 7 chr3 30460958 30461230 -197063348 - MER33 DNA MER1_type 0 324 2 261 146 0 0 chr3 30461234 30461275 -197063303 - MER3 DNA MER1_type -165 44 4 213 240 36 167 chr3 30461329 30461521 -197063057 + MIR3 SINE MIR 23 189 -19 410 248 29 36 chr3 30462758 30462895 -197061683 - MLT1J2 LTR MaLR -51 399 264 432 212 77 53 chr3 30462920 30463090 -197061488 + MER58C DNA MER1_type 42 215 0 719 192 27 12 chr3 30463154 30463327 -197061251 - MLT1J1 LTR MaLR -289 222 6 1935 146 0 4 chr3 30463733 30464036 -197060542 + AluSc SINE Alu 1 302 0 490 333 48 26 chr3 30464138 30464369 -197060209 + MIR SINE MIR 26 261 -1 1092 283 45 47 chr3 30465013 30465416 -197059162 - LTR16C LTR ERVL -3 488 87 1365 215 107 57 chr3 30465556 30466044 -197058534 - MLT2B1 LTR ERVL -8 512 1 204 40 0 0 chr3 30466889 30466914 -197057664 + (TTA)n Simple_repeat Simple_repeat 1 25 0 2020 287 131 19 chr3 30466944 30467923 -197056655 - L2 LINE L2 -42 3271 2174 2434 74 0 3 chr3 30468080 30468377 -197056201 + AluY SINE Alu 1 296 -15 2410 98 3 0 chr3 30468474 30468781 -197055797 + AluSp SINE Alu 1 308 -5 225 0 0 0 chr3 30468781 30468806 -197055772 + (TA)n Simple_repeat Simple_repeat 2 26 0 649 283 20 16 chr3 30468875 30469126 -197055452 - L1ME LINE L1 -328 5793 5542 1396 100 273 9 chr3 30469215 30469446 -197055132 + AluSg1 SINE Alu 1 292 -17 496 330 0 36 chr3 30469794 30469988 -197054590 + MER5A DNA MER1_type 2 188 -1 23 0 0 0 chr3 30470385 30470408 -197054170 + AT_rich Low_complexity Low_complexity 1 23 0 735 225 39 0 chr3 30470598 30470776 -197053802 + MER5A DNA MER1_type 2 186 -3 623 192 70 32 chr3 30470780 30470936 -197053642 - MER5A DNA MER1_type -21 168 7 386 282 29 24 chr3 30471072 30471242 -197053336 + LTR16C LTR ERVL 309 479 -12 690 232 170 47 chr3 30473459 30473848 -197050730 - MER110 LTR ERV1 0 468 63 2139 128 10 7 chr3 30474592 30474897 -197049681 - AluSx SINE Alu -6 306 1 586 268 54 30 chr3 30476287 30476455 -197048123 - MER5B DNA MER1_type 0 178 7 1902 147 49 30 chr3 30476641 30477009 -197047569 - THE1C LTR MaLR 0 375 1 364 320 55 5 chr3 30478023 30478223 -197046355 - LTR16C LTR ERVL -101 390 181 272 345 0 43 chr3 30478242 30478358 -197046220 + MIR SINE MIR 22 132 -76 305 247 54 32 chr3 30478703 30478796 -197045782 - L2 LINE L2 0 3313 3219 450 259 47 75 chr3 30481555 30481810 -197042768 + LTR16A1 LTR ERVL 210 457 0 279 294 55 0 chr3 30481917 30482063 -197042515 + L1MC5 LINE L1 5805 5958 -1850 1846 145 93 3 chr3 30482085 30482430 -197042148 + MLT1B LTR MaLR 15 390 0 3677 245 10 22 chr3 30482434 30483695 -197040883 + L1M4 LINE L1 2787 4032 -2114 1683 221 113 35 chr3 30483756 30484448 -197040130 + L1MC5 LINE L1 6694 7439 -522 334 200 11 32 chr3 30484485 30484580 -197039998 + L1MEc LINE L1 1928 2020 -4376 4221 237 69 22 chr3 30484620 30485109 -197039469 + L1MEc LINE L1 2122 2587 -3628 1905 127 39 75 chr3 30485109 30485495 -197039083 + THE1C LTR MaLR 1 372 -3 4221 237 69 22 chr3 30485495 30485929 -197038649 + L1MEc LINE L1 2587 2999 -3216 2218 135 30 25 chr3 30485929 30486291 -197038287 - THE1B LTR MaLR 0 364 1 4221 237 69 22 chr3 30486291 30487051 -197037527 + L1MEc LINE L1 2999 3845 -2370 509 211 66 110 chr3 30487166 30487356 -197037222 + L1MC5 LINE L1 7610 7782 -179 2079 130 0 3 chr3 30487356 30487656 -197036922 + AluSx SINE Alu 1 299 -13 509 211 66 110 chr3 30487656 30487783 -197036795 + L1MC5 LINE L1 7782 7913 -48 39 0 0 0 chr3 30487792 30487831 -197036747 + AT_rich Low_complexity Low_complexity 1 39 0 209 358 11 32 chr3 30488103 30488198 -197036380 - L2 LINE L2 -6 3307 3215 750 213 46 51 chr3 30488394 30488610 -197035968 - MER58C DNA MER1_type 0 215 1 435 282 42 28 chr3 30489877 30490019 -197034559 - MIR SINE MIR -117 145 2 538 276 94 26 chr3 30490159 30490351 -197034227 - MIR SINE MIR -47 215 11 1478 106 10 5 chr3 30493711 30493910 -197030668 + AluSq SINE Alu 107 306 -7 297 185 0 0 chr3 30493957 30494022 -197030556 + CT-rich Low_complexity Low_complexity 2 66 0 832 322 143 26 chr3 30494208 30494863 -197029715 + L2 LINE L2 2100 2831 -483 282 391 8 0 chr3 30495446 30495574 -197029004 - MER5B DNA MER1_type -29 149 21 259 386 14 14 chr3 30496023 30496163 -197028415 + MIR SINE MIR 15 154 -108 226 159 68 0 chr3 30497163 30497207 -197027371 + MIR SINE MIR 31 77 -185 1144 251 111 18 chr3 30497221 30497619 -197026959 + LTR16A LTR ERVL 16 450 0 802 207 12 30 chr3 30497619 30497788 -197026790 + MIR SINE MIR 76 241 -21 654 246 198 56 chr3 30498721 30499135 -197025443 + L2 LINE L2 2169 2641 -673 1915 145 3 27 chr3 30499365 30499661 -197024917 - AluJb SINE Alu -23 289 1 549 139 12 0 chr3 30499800 30499886 -197024692 + FLAM_A SINE Alu 41 127 -15 206 135 0 0 chr3 30499928 30499965 -197024613 + L2 LINE L2 3277 3313 0 313 351 37 27 chr3 30500033 30500221 -197024357 - MIR SINE MIR -13 249 60 351 0 0 0 chr3 30500575 30500614 -197023964 + (CA)n Simple_repeat Simple_repeat 1 39 0 271 216 0 0 chr3 30500713 30500764 -197023814 + MIR3 SINE MIR 135 185 -23 1760 158 46 146 chr3 30500971 30501490 -197023088 + MLT1C LTR MaLR 1 467 0 339 234 119 40 chr3 30501547 30501654 -197022924 + MER112 DNA MER1_type 1 98 -162 524 15 15 0 chr3 30501654 30501719 -197022859 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 339 234 119 40 chr3 30501719 30501812 -197022766 + MER112 DNA MER1_type 98 217 -43 26 50 0 0 chr3 30502321 30502361 -197022217 + AT_rich Low_complexity Low_complexity 1 40 0 1768 184 0 3 chr3 30502623 30502928 -197021650 + AluJo SINE Alu 1 304 0 1207 291 90 2 chr3 30503265 30503711 -197020867 + MER69 DNA AcHobo 84 568 -658 507 213 115 0 chr3 30503709 30503883 -197020695 + MER69 DNA AcHobo 2010 2203 -323 * 981 291 83 14 chr3 30504585 30505175 -197019403 + HAL1b LINE L1 120 750 -598 342 226 68 68 chr3 30505201 30505347 -197019231 + L1MB1 LINE L1 5610 5755 -415 1867 190 47 49 chr3 30505477 30505929 -197018649 + MER74C LTR ERVL 10 460 0 414 269 50 0 chr3 30505940 30506059 -197018519 - MER45A DNA AcHobo -53 125 1 49 52 0 0 chr3 30506181 30506258 -197018320 + AT_rich Low_complexity Low_complexity 1 77 0 21 0 0 0 chr3 30506355 30506376 -197018202 + AT_rich Low_complexity Low_complexity 1 21 0 753 159 91 58 chr3 30506521 30506617 -197017961 + L1MB1 LINE L1 5954 6045 -123 1963 125 3 28 chr3 30506617 30506933 -197017645 + AluSx SINE Alu 1 309 0 753 159 91 58 chr3 30506933 30507043 -197017535 + L1MB1 LINE L1 6045 6168 0 1700 153 167 16 chr3 30507344 30507716 -197016862 + MSTA LTR MaLR 1 428 0 1339 202 12 19 chr3 30508775 30508901 -197015677 + AluJb SINE Alu 1 126 -186 423 38 0 0 chr3 30508901 30508954 -197015624 + (TA)n Simple_repeat Simple_repeat 1 53 0 303 93 0 0 chr3 30508956 30508999 -197015579 + (CA)n Simple_repeat Simple_repeat 2 44 0 1339 202 12 19 chr3 30508999 30509126 -197015452 + AluJb SINE Alu 127 255 -57 42 0 0 0 chr3 30509127 30509169 -197015409 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr3 30509271 30509293 -197015285 + AT_rich Low_complexity Low_complexity 1 22 0 2294 103 3 0 chr3 30509449 30509750 -197014828 - AluSx SINE Alu -10 302 1 680 274 95 40 chr3 30510166 30510589 -197013989 + LTR33 LTR ERVL 7 452 -69 22 56 0 0 chr3 30511631 30511667 -197012911 + AT_rich Low_complexity Low_complexity 1 36 0 1501 111 0 0 chr3 30512827 30513025 -197011553 + AluSg/x SINE Alu 97 294 -16 408 161 0 23 chr3 30513706 30513793 -197010785 - L1PA16 LINE L1 -1 6165 6081 688 196 7 0 chr3 30513793 30513941 -197010637 + L1P LINE L1 4951 5099 -1047 1916 161 121 5 chr3 30513946 30514319 -197010259 + MSTA LTR MaLR 1 416 -12 377 160 18 49 chr3 30514320 30514443 -197010135 + L1P LINE L1 5121 5236 -910 1892 159 62 0 chr3 30514543 30514863 -197009715 + MER2 DNA MER2_type 6 345 0 245 98 24 0 chr3 30514867 30514908 -197009670 + (CTAAA)n Simple_repeat Simple_repeat 4 45 0 231 229 0 16 chr3 30516019 30516080 -197008498 - MLT1H LTR MaLR -391 158 99 226 356 136 0 chr3 30516184 30516316 -197008262 + MIR3 SINE MIR 16 165 -43 1356 261 45 14 chr3 30516834 30517278 -197007300 + LTR37B LTR ERV1 5 462 -6 252 79 0 26 chr3 30518165 30518203 -197006375 + FLAM SINE Alu 86 122 -11 22 88 0 0 chr3 30518259 30518316 -197006262 + AT_rich Low_complexity Low_complexity 1 57 0 227 195 0 0 chr3 30519011 30519052 -197005526 + L2 LINE L2 3272 3312 -1 989 266 80 47 chr3 30519368 30519770 -197004808 - LTR16A LTR ERVL -18 432 18 195 129 0 0 chr3 30519835 30519866 -197004712 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 237 347 27 40 chr3 30520306 30520456 -197004122 - MIR SINE MIR -50 212 65 22 0 0 0 chr3 30521486 30521508 -197003070 + AT_rich Low_complexity Low_complexity 1 22 0 5794 116 28 11 chr3 30521641 30522495 -197002083 + L1MA3 LINE L1 5382 6253 -52 2090 124 3 3 chr3 30522495 30522794 -197001784 + AluSq SINE Alu 1 299 -14 5794 116 28 11 chr3 30522794 30522848 -197001730 + L1MA3 LINE L1 6253 6305 0 462 291 53 67 chr3 30522966 30523233 -197001345 - MIR SINE MIR 0 262 2 365 253 0 11 chr3 30523402 30523489 -197001089 + MARNA DNA Mariner 298 383 -203 229 346 88 13 chr3 30523531 30523690 -197000888 + MARNA DNA Mariner 398 568 -18 236 299 126 0 chr3 30524930 30525017 -196999561 - MIR SINE MIR -81 181 84 8438 254 65 21 chr3 30526594 30529338 -196995240 + L1ME1 LINE L1 1110 3732 -2483 2601 51 0 3 chr3 30529338 30529650 -196994928 + AluY SINE Alu 1 311 0 8438 254 65 21 chr3 30529650 30530075 -196994503 + L1ME1 LINE L1 3732 4137 -2078 1687 178 0 14 chr3 30530075 30530361 -196994217 + AluJo SINE Alu 7 288 -24 8438 254 65 21 chr3 30530361 30531286 -196993292 + L1ME1 LINE L1 4137 5348 -867 745 294 62 58 chr3 30531431 30532015 -196992563 + PABL_B LTR ERV1 82 667 0 2289 220 32 41 chr3 30532015 30532648 -196991930 + L1ME1 LINE L1 5604 6230 -5 6748 78 8 0 chr3 30533238 30534627 -196989951 + L1PA8 LINE L1 4769 6164 -8 250 269 0 30 chr3 30535420 30535487 -196989091 - L2 LINE L2 -1 3312 3248 2113 102 33 20 chr3 30535903 30536207 -196988371 - AluSx SINE Alu -4 308 1 272 325 12 0 chr3 30536298 30536381 -196988197 - L3 LINE CR1 -205 1372 1289 30 45 0 0 chr3 30536484 30536528 -196988050 + AT_rich Low_complexity Low_complexity 1 44 0 896 325 139 18 chr3 30536716 30537221 -196987357 - L3 LINE CR1 -330 1247 682 311 322 0 0 chr3 30537257 30537347 -196987231 + L1MC4 LINE L1 6614 6703 -1339 204 158 0 0 chr3 30537352 30537390 -196987188 + (TA)n Simple_repeat Simple_repeat 1 38 0 321 253 11 33 chr3 30537395 30537486 -196987092 - L1MC4 LINE L1 -1339 6703 6615 350 275 0 11 chr3 30537493 30537584 -196986994 - L1MC4 LINE L1 -1339 6703 6614 328 289 0 11 chr3 30537505 30537595 -196986983 + L1MC4 LINE L1 6614 6702 -1340 * 306 73 0 0 chr3 30537602 30537643 -196986935 + (CA)n Simple_repeat Simple_repeat 2 42 0 477 246 207 6 chr3 30537645 30537824 -196986754 - L3 LINE CR1 -903 674 460 23 0 0 0 chr3 30538788 30538811 -196985767 + AT_rich Low_complexity Low_complexity 1 23 0 492 25 25 25 chr3 30538870 30538949 -196985629 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 255 316 94 43 chr3 30539056 30539173 -196985405 - MIR SINE MIR -62 146 24 370 323 132 6 chr3 30539470 30539637 -196984941 + MIR3 SINE MIR 20 207 -1 530 251 97 91 chr3 30539806 30540242 -196984336 - MLT1J1 LTR MaLR 0 450 1 1629 161 17 3 chr3 30541222 30541520 -196983058 - MER33 DNA MER1_type -22 302 1 574 234 58 13 chr3 30543065 30543219 -196981359 + MIR SINE MIR 102 262 0 3633 117 11 0 chr3 30543401 30543922 -196980656 + MER1A DNA MER1_type 1 527 0 587 225 8 23 chr3 30544328 30544457 -196980121 + MLT1J2 LTR MaLR 83 209 -241 412 190 13 0 chr3 30544532 30544611 -196979967 + MLT1J2 LTR MaLR 361 440 -10 326 320 82 46 chr3 30544953 30545459 -196979119 + L2 LINE L2 2710 3311 -2 278 326 8 15 chr3 30545727 30545859 -196978719 - L1 LINE L1 -3588 2558 2428 230 128 0 0 chr3 30545919 30545958 -196978620 + MER46C DNA MER2_type 127 165 -173 378 0 0 0 chr3 30546461 30546503 -196978075 + (TA)n Simple_repeat Simple_repeat 2 43 0 961 251 29 2 chr3 30547056 30547292 -196977286 - MLT1E3 LTR MaLR 0 611 336 948 255 154 68 chr3 30547292 30547838 -196976740 - MLT1E LTR MaLR 0 593 1 961 251 29 2 chr3 30547838 30547866 -196976712 - MLT1E3 LTR MaLR -275 336 310 520 311 159 21 chr3 30547851 30548285 -196976293 + MLT1L LTR MaLR 112 605 -10 * 204 237 40 40 chr3 30548442 30548518 -196976060 + MIR SINE MIR 129 204 -58 2431 53 3 13 chr3 30549040 30549343 -196975235 + AluY SINE Alu 3 302 -9 656 219 42 110 chr3 30549516 30549982 -196974596 - MLT1H LTR MaLR 0 580 1 509 259 168 0 chr3 30550144 30550329 -196974249 + MIR SINE MIR 47 262 0 214 247 97 21 chr3 30551543 30551636 -196972942 - MIR SINE MIR -65 143 44 195 298 131 0 chr3 30551733 30551817 -196972761 + MIR SINE MIR 42 136 -126 2172 132 26 19 chr3 30551821 30552199 -196972379 - MLT1B LTR MaLR -4 386 6 1147 248 116 14 chr3 30552257 30552620 -196971958 - MLT1E2 LTR MaLR -10 616 217 529 218 62 76 chr3 30552665 30552890 -196971688 + L2 LINE L2 3027 3248 -65 895 184 29 7 chr3 30552934 30553125 -196971453 - MLT1D LTR MaLR -333 172 1 690 235 105 6 chr3 30553241 30553403 -196971175 + MER20B DNA MER1_type 38 215 -4 639 252 75 57 chr3 30553644 30553926 -196970652 - L2 LINE L2 0 3313 3027 490 236 159 19 chr3 30555362 30555449 -196969129 + MER5A DNA MER1_type 10 83 -106 2240 160 44 12 chr3 30555449 30555862 -196968716 - MSTB LTR MaLR 0 426 1 490 236 159 19 chr3 30555862 30555931 -196968647 + MER5A DNA MER1_type 83 188 -1 880 271 158 16 chr3 30555939 30556364 -196968214 + MLT1K LTR MaLR 2 486 -102 10352 32 2 2 chr3 30556446 30558464 -196966114 - L1PA4 LINE L1 -1 6154 4138 1478 259 85 30 chr3 30560447 30560952 -196963626 - MLT1H LTR MaLR -16 533 1 1052 152 69 73 chr3 30560993 30561355 -196963223 + MER31A LTR ERV1 10 483 -2 821 310 77 30 chr3 30562478 30562943 -196961635 - L2 LINE L2 0 3313 2827 429 252 0 0 chr3 30562945 30563052 -196961526 - L1P LINE L1 -1606 4540 4434 974 83 0 0 chr3 30563052 30563173 -196961405 + L1PA16 LINE L1 6036 6156 -10 364 302 26 42 chr3 30563191 30563383 -196961195 - L2 LINE L2 -461 2853 2665 216 97 0 0 chr3 30563655 30563686 -196960892 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 298 244 198 0 chr3 30565319 30565405 -196959173 - MLT1K LTR MaLR -3 585 483 579 92 0 0 chr3 30565434 30565521 -196959057 + (TC)n Simple_repeat Simple_repeat 2 88 0 730 119 0 0 chr3 30565611 30565712 -196958866 + MLT1A1 LTR MaLR 1 101 -264 635 211 64 65 chr3 30565718 30566072 -196958506 - LTR45B LTR ERV1 0 602 259 1618 144 0 0 chr3 30566245 30566481 -196958097 + MLT1A1 LTR MaLR 130 365 0 207 0 0 0 chr3 30566798 30566821 -196957757 + (CA)n Simple_repeat Simple_repeat 2 24 0 466 312 13 52 chr3 30566874 30567105 -196957473 + L3 LINE CR1 1282 1503 -74 26 0 0 0 chr3 30567293 30567319 -196957259 + AT_rich Low_complexity Low_complexity 1 26 0 1677 168 28 7 chr3 30567344 30567635 -196956943 - AluJb SINE Alu -9 303 7 252 349 23 8 chr3 30567705 30567834 -196956744 + MER102b DNA MER1_type 211 341 0 279 0 0 0 chr3 30567959 30567990 -196956588 + (TAA)n Simple_repeat Simple_repeat 3 33 0 320 366 23 6 chr3 30568068 30568243 -196956335 - MLT1I LTR MaLR 0 409 232 494 250 71 114 chr3 30568590 30568675 -196955903 - MLT1I LTR MaLR -2 424 337 2254 99 0 3 chr3 30568675 30568977 -196955601 + AluSg SINE Alu 1 301 -9 494 250 71 114 chr3 30568977 30569301 -196955277 - MLT1I LTR MaLR -89 337 1 505 241 26 43 chr3 30569307 30569446 -196955132 - MIR SINE MIR -61 147 54 275 249 55 152 chr3 30569569 30569734 -196954844 + MIR3 SINE MIR 52 200 -8 909 274 114 25 chr3 30570039 30570691 -196953887 + L2 LINE L2 2579 3310 -3 713 192 82 0 chr3 30571018 30571164 -196953414 - MER3 DNA MER1_type -28 181 24 1363 209 45 35 chr3 30572289 30572659 -196951919 - MLT1G LTR MaLR 0 590 155 650 247 52 6 chr3 30572788 30572962 -196951616 - MLT1G LTR MaLR -408 182 1 23 0 0 0 chr3 30573178 30573201 -196951377 + AT_rich Low_complexity Low_complexity 1 23 0 1986 127 0 7 chr3 30573201 30573484 -196951094 - AluSx SINE Alu -31 281 1 273 344 111 57 chr3 30574296 30574362 -196950216 - L2 LINE L2 -337 2977 2916 1694 189 10 13 chr3 30574362 30574675 -196949903 + AluJo SINE Alu 1 312 0 273 344 111 57 chr3 30574675 30574852 -196949726 - L2 LINE L2 -398 2916 2721 1175 218 142 27 chr3 30575767 30576134 -196948444 + MER20B DNA MER1_type 144 552 -231 622 228 158 6 chr3 30576145 30576303 -196948275 + MER5A DNA MER1_type 8 189 0 21 0 0 0 chr3 30576326 30576347 -196948231 + AT_rich Low_complexity Low_complexity 1 21 0 378 158 226 14 chr3 30576349 30576495 -196948083 + MER20B DNA MER1_type 605 781 -2 1648 87 0 5 chr3 30576954 30577161 -196947417 - AluY SINE Alu -18 293 88 409 316 63 13 chr3 30577782 30577940 -196946638 + MIR3 SINE MIR 38 203 -5 2358 142 129 5 chr3 30578057 30578438 -196946140 + MSTA LTR MaLR 1 428 0 5141 146 10 15 chr3 30578672 30579459 -196945119 - LTR39 LTR ERV1 0 783 1 324 320 95 25 chr3 30579619 30579819 -196944759 + L1ME LINE L1 5556 5769 -352 709 142 14 28 chr3 30579850 30579991 -196944587 - L1MC4 LINE L1 0 8042 7904 321 185 0 0 chr3 30579993 30580058 -196944520 + (TA)n Simple_repeat Simple_repeat 1 65 0 225 114 23 0 chr3 30580071 30580115 -196944463 - LTR66 LTR ERVL -172 438 394 459 175 19 48 chr3 30580168 30580250 -196944328 - L1MC4 LINE L1 -377 7665 7582 3493 136 118 60 chr3 30580250 30580483 -196944095 + LTR62 LTR ERVK 1 219 -500 2738 13 0 0 chr3 30580483 30580782 -196943796 + AluY SINE Alu 1 299 -12 3493 136 118 60 chr3 30580782 30580845 -196943733 + LTR62 LTR ERVK 219 277 -442 201 39 0 0 chr3 30580845 30580871 -196943707 + (CAGCC)n Simple_repeat Simple_repeat 3 28 0 3493 136 118 60 chr3 30580871 30581143 -196943435 + LTR62 LTR ERVK 277 618 -101 2453 77 3 0 chr3 30581143 30581453 -196943125 - AluY SINE Alu 0 311 1 3493 136 118 60 chr3 30581453 30581561 -196943017 + LTR62 LTR ERVK 618 718 -1 459 175 19 48 chr3 30581561 30581581 -196942997 - L1MC4 LINE L1 -460 7582 7566 995 165 0 0 chr3 30581581 30581739 -196942839 - FRAM SINE Alu -17 159 2 401 99 9 207 chr3 30581740 30581770 -196942808 - L1MC4 LINE L1 -468 7574 7540 1748 166 0 14 chr3 30581770 30582054 -196942524 + AluJb SINE Alu 3 282 -30 401 99 9 207 chr3 30582054 30582134 -196942444 - L1MC4 LINE L1 -502 7540 7486 460 214 56 8 chr3 30582217 30582343 -196942235 - LTR33 LTR ERVL -2 519 388 709 256 28 28 chr3 30582478 30582689 -196941889 - LTR33 LTR ERVL -308 213 3 207 280 20 0 chr3 30584832 30584882 -196939696 - L2 LINE L2 -14 3258 3208 2025 151 0 0 chr3 30585015 30585319 -196939259 - AluSx SINE Alu -8 304 1 194 302 19 126 chr3 30587082 30587241 -196937337 + L3 LINE CR1 84 225 -1352 1222 160 13 13 chr3 30587264 30587501 -196937077 - MER33 DNA MER1_type -56 268 32 348 259 59 12 chr3 30588857 30588942 -196935636 - MER91A DNA MER1_type -49 147 59 2058 134 0 25 chr3 30589023 30589343 -196935235 + AluSx SINE Alu 1 312 0 295 283 253 6 chr3 30589356 30589522 -196935056 + L2 LINE L2 3008 3214 -99 1872 173 3 3 chr3 30589789 30590096 -196934482 + AluSx SINE Alu 1 307 -5 396 326 168 24 chr3 30590300 30590591 -196933987 + L2 LINE L2 2925 3257 -15 292 291 134 15 chr3 30590604 30590738 -196933840 + L3 LINE CR1 523 672 -905 1092 152 68 115 chr3 30591608 30591806 -196932772 + MER33 DNA MER1_type 17 196 -2389 1896 184 7 0 chr3 30591806 30592115 -196932463 + AluJb SINE Alu 2 312 0 1092 152 68 115 chr3 30592115 30592239 -196932339 + MER33 DNA MER1_type 196 324 0 1338 279 39 3 chr3 30592300 30592659 -196931919 + LTR16C LTR ERVL 107 478 -13 2126 134 0 10 chr3 30592673 30592845 -196931733 - AluSx SINE Alu -8 304 135 309 26 0 0 chr3 30592845 30592883 -196931695 + (TG)n Simple_repeat Simple_repeat 1 38 0 2126 134 0 10 chr3 30592883 30593017 -196931561 - AluSx SINE Alu -177 135 1 325 320 8 31 chr3 30593043 30593171 -196931407 - MIR SINE MIR -133 129 5 1330 176 181 52 chr3 30593296 30593528 -196931050 + MLT1F1 LTR MaLR 3 204 -363 1472 143 65 154 chr3 30593528 30593879 -196930699 + MLT1B LTR MaLR 1 309 -81 1867 149 11 3 chr3 30593879 30594161 -196930417 + AluJb SINE Alu 1 284 -28 1472 143 65 154 chr3 30594161 30594237 -196930341 + MLT1B LTR MaLR 309 390 0 1330 176 181 52 chr3 30594237 30594534 -196930044 + MLT1F1 LTR MaLR 204 567 0 213 39 0 0 chr3 30594607 30594633 -196929945 + (TAA)n Simple_repeat Simple_repeat 2 27 0 20807 90 9 7 chr3 30594884 30597996 -196926582 - L1P2 LINE L1 -678 5476 2358 356 300 0 0 chr3 30598274 30598394 -196926184 + G-rich Low_complexity Low_complexity 1 120 0 213 413 0 0 chr3 30598441 30598579 -196925999 + G-rich Low_complexity Low_complexity 1 138 0 222 336 16 16 chr3 30598626 30598754 -196925824 + G-rich Low_complexity Low_complexity 5 132 0 * 311 290 11 0 chr3 30598662 30598755 -196925823 + GA-rich Low_complexity Low_complexity 3 96 0 403 138 0 0 chr3 30598758 30598816 -196925762 - MADE1 DNA Mariner -22 58 1 192 300 108 39 chr3 30598816 30598946 -196925632 - L2 LINE L2 -665 2649 2511 1885 133 59 3 chr3 30599154 30599440 -196925138 - AluSx SINE Alu -10 302 1 225 368 11 0 chr3 30599753 30599840 -196924738 - MIR SINE MIR -160 102 15 21 36 0 0 chr3 30599915 30599943 -196924635 + AT_rich Low_complexity Low_complexity 1 28 0 212 353 144 29 chr3 30600443 30600582 -196923996 - MIR3 SINE MIR -21 187 33 325 281 148 16 chr3 30600852 30600980 -196923598 + L2 LINE L2 3125 3269 -3 6482 172 8 3 chr3 30601067 30602829 -196921749 + L1P5 LINE L1 4013 5780 -371 249 234 29 16 chr3 30602842 30602947 -196921631 - L1MCa LINE L1 -1339 6983 1996 * 288 250 23 0 chr3 30602869 30602957 -196921621 + L1MC4 LINE L1 6614 6703 -1339 252 273 23 0 chr3 30602969 30603057 -196921521 + L1MC4 LINE L1 6614 6703 -1339 254 264 23 0 chr3 30603058 30603145 -196921433 + L1MC4 LINE L1 6615 6703 -1339 2600 110 3 16 chr3 30603163 30603537 -196921041 + L1PB1 LINE L1 5783 6151 0 406 265 114 65 chr3 30603655 30603900 -196920678 - LTR41 LTR ERVL -7 766 510 764 223 48 11 chr3 30604322 30604510 -196920068 - LTR41 LTR ERVL -578 195 1 298 234 13 130 chr3 30604571 30604725 -196919853 + MIR SINE MIR 123 258 -4 294 330 39 0 chr3 30604757 30604860 -196919718 + MIR SINE MIR 37 143 -65 465 286 50 37 chr3 30605668 30605829 -196918749 + MER5A DNA MER1_type 21 183 -6 1174 204 44 88 chr3 30605961 30606348 -196918230 - MLT1A2 LTR MaLR 0 374 5 363 226 361 0 chr3 30606609 30606742 -196917836 - MER5A DNA MER1_type 0 189 9 1882 186 73 133 chr3 30606977 30607594 -196916984 - MER119 DNA MER1_type 0 583 4 2363 192 88 13 chr3 30608764 30609320 -196915258 + L1ME2 LINE L1 5558 6155 -9 533 265 42 24 chr3 30610349 30610515 -196914063 + MIR SINE MIR 79 247 -15 1998 202 33 33 chr3 30610790 30611275 -196913303 + L1ME1 LINE L1 5644 6128 -38 989 368 103 15 chr3 30611301 30612040 -196912538 + L3 LINE CR1 286 1089 -488 185 365 54 0 chr3 30612107 30612181 -196912397 + L2 LINE L2 3155 3232 -40 753 283 76 57 chr3 30612359 30612855 -196911723 + MLT1G1 LTR MaLR 1 549 0 283 298 304 11 chr3 30613562 30613743 -196910835 + L3 LINE CR1 1331 1564 -13 247 241 264 6 chr3 30614500 30614674 -196909904 + MER112 DNA MER1_type 2 220 -40 1311 208 24 37 chr3 30615825 30616119 -196908459 - AluJb SINE Alu -21 291 2 188 313 16 0 chr3 30616255 30616319 -196908259 - L2 LINE L2 -66 3247 3183 180 0 0 0 chr3 30618517 30618537 -196906041 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr3 30618641 30618663 -196905915 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr3 30618986 30619015 -196905563 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr3 30619017 30619038 -196905540 + (CA)n Simple_repeat Simple_repeat 2 22 0 2064 142 0 10 chr3 30619997 30620306 -196904272 - AluSx SINE Alu 0 312 7 21 57 0 0 chr3 30620686 30620721 -196903857 + AT_rich Low_complexity Low_complexity 1 35 0 2460 54 17 0 chr3 30620872 30621168 -196903410 + AluY SINE Alu 3 303 -8 25 65 0 0 chr3 30622139 30622185 -196902393 + AT_rich Low_complexity Low_complexity 1 46 0 1911 226 88 17 chr3 30622506 30623029 -196901549 - MLT1F1 LTR MaLR -2 565 6 207 0 0 0 chr3 30624045 30624068 -196900510 + (CA)n Simple_repeat Simple_repeat 2 24 0 236 343 21 0 chr3 30624138 30624278 -196900300 + LTR16A1 LTR ERVL 305 447 -10 276 250 40 10 chr3 30624299 30624399 -196900179 + MER20 DNA MER1_type 100 202 -17 807 308 73 64 chr3 30624505 30625040 -196899538 - L2 LINE L2 -1215 2099 1560 1313 282 19 14 chr3 30625388 30625817 -196898761 + LTR16B LTR ERVL 34 464 0 930 186 11 6 chr3 30626774 30626951 -196897627 + MER5B DNA MER1_type 1 178 0 1552 273 50 37 chr3 30627098 30627429 -196897149 + L2 LINE L2 2459 2784 -529 782 223 114 5 chr3 30627429 30627631 -196896947 - MER58A DNA MER1_type 0 224 1 1552 273 50 37 chr3 30627631 30628047 -196896531 + L2 LINE L2 2784 3216 -97 247 248 171 0 chr3 30628052 30628157 -196896421 - MLT2F LTR ERVL -9 654 532 558 317 13 35 chr3 30628447 30628677 -196895901 + MIR SINE MIR 38 262 0 192 256 0 0 chr3 30628692 30628735 -196895843 - MIR SINE MIR -170 92 50 514 355 18 0 chr3 30629840 30630057 -196894521 - MIR SINE MIR -27 235 15 194 321 82 66 chr3 30630025 30630221 -196894357 + L2 LINE L2 2855 3053 -260 * 346 244 59 34 chr3 30630633 30630752 -196893826 - MLT1K LTR MaLR -305 283 162 243 132 0 0 chr3 30630754 30630792 -196893786 - MLT1L LTR MaLR -414 201 164 617 321 11 11 chr3 30631064 30631254 -196893324 + L2 LINE L2 3124 3313 0 666 219 88 19 chr3 30632796 30633001 -196891577 - L1ME3 LINE L1 -1 6161 5943 749 213 132 30 chr3 30633178 30633375 -196891203 + MER20 DNA MER1_type 3 219 0 361 224 0 24 chr3 30634627 30634712 -196889866 + MIR SINE MIR 180 262 0 31 0 0 0 chr3 30634911 30634942 -196889636 + AT_rich Low_complexity Low_complexity 1 31 0 448 303 83 25 chr3 30635369 30635696 -196888882 + L1MC4a LINE L1 5529 5874 -1934 414 0 0 0 chr3 30635714 30635760 -196888818 + (CA)n Simple_repeat Simple_repeat 2 47 0 261 209 88 81 chr3 30636060 30636208 -196888370 + L1ME LINE L1 4487 4635 -1511 21 0 0 0 chr3 30636431 30636452 -196888126 + AT_rich Low_complexity Low_complexity 1 21 0 1963 139 0 0 chr3 30636517 30636805 -196887773 + AluJb SINE Alu 22 309 -3 884 221 89 48 chr3 30636833 30637207 -196887371 - L1ME3A LINE L1 0 6170 5778 1556 202 40 8 chr3 30637207 30637559 -196887019 + MLT1A1 LTR MaLR 3 365 0 884 221 89 48 chr3 30637559 30637577 -196887001 - L1ME3A LINE L1 -392 5778 5762 675 255 58 0 chr3 30637655 30637843 -196886735 + L1ME LINE L1 5511 5709 -461 2154 208 22 38 chr3 30638711 30639140 -196885438 + L1MB8 LINE L1 5592 6015 -163 2208 114 7 3 chr3 30639140 30639438 -196885140 - AluSg SINE Alu -10 300 2 2154 208 22 38 chr3 30639438 30639594 -196884984 + L1MB8 LINE L1 6015 6172 -6 21 36 0 0 chr3 30639742 30639770 -196884808 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr3 30639833 30639868 -196884710 + AT_rich Low_complexity Low_complexity 1 35 0 508 327 88 33 chr3 30639903 30640209 -196884369 + L2 LINE L2 2633 2955 -359 800 267 32 14 chr3 30640215 30640422 -196884156 + MIR SINE MIR 2 215 -47 2508 80 0 0 chr3 30640422 30640734 -196883844 + AluSq SINE Alu 1 312 -1 800 267 32 14 chr3 30640734 30640747 -196883831 + MIR SINE MIR 215 226 -36 209 347 61 0 chr3 30640777 30640875 -196883703 + L2 LINE L2 2954 3057 -256 947 239 47 109 chr3 30640884 30641481 -196883097 - L2 LINE L2 -1 3312 2755 458 139 48 11 chr3 30641496 30641610 -196882968 + MLT1E LTR MaLR 501 585 -8 755 278 34 5 chr3 30641616 30641825 -196882753 - L2 LINE L2 -559 2755 2541 238 359 97 0 chr3 30641920 30642023 -196882555 + L2 LINE L2 3160 3272 0 192 152 0 0 chr3 30642038 30642071 -196882507 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 569 343 78 28 chr3 30642481 30642877 -196881701 + L1ME4a LINE L1 5266 5681 -440 323 259 51 57 chr3 30642886 30643044 -196881534 + L1ME4a LINE L1 5789 5945 -176 365 235 31 53 chr3 30643054 30643252 -196881326 + L1MD2 LINE L1 6090 7748 -60 426 39 0 0 chr3 30643431 30643483 -196881095 + (TGGA)n Simple_repeat Simple_repeat 3 54 0 370 302 63 13 chr3 30643826 30643985 -196880593 + MIR SINE MIR 41 207 -55 283 262 56 24 chr3 30645171 30645297 -196879281 + LTR67 LTR ERVL 428 557 0 460 277 69 27 chr3 30645401 30645661 -196878917 + L1ME4a LINE L1 5850 6120 -1 1445 216 9 15 chr3 30645687 30646020 -196878558 + MLT1A1 LTR MaLR 35 365 0 23 0 0 0 chr3 30646055 30646078 -196878500 + AT_rich Low_complexity Low_complexity 1 23 0 233 193 0 35 chr3 30646436 30646493 -196878085 - Charlie1b DNA MER1_type -4 519 465 14062 196 24 6 chr3 30646503 30648323 -196876255 + L1PB1 LINE L1 4 1791 -5076 2240 151 28 8 chr3 30648323 30648680 -196875898 - THE1B LTR MaLR 0 364 1 14062 196 24 6 chr3 30648680 30652997 -196871581 + L1PB1 LINE L1 1791 6498 -369 226 171 43 14 chr3 30653005 30653075 -196871503 + (TA)n Simple_repeat Simple_repeat 2 73 0 209 153 18 45 chr3 30653100 30653211 -196871367 + (TA)n Simple_repeat Simple_repeat 1 108 0 2202 109 36 6 chr3 30653218 30653576 -196871002 + L1PB1 LINE L1 6499 6867 0 1955 165 54 34 chr3 30653577 30654043 -196870535 - Charlie1b DNA MER1_type -48 475 1 240 326 47 0 chr3 30654473 30654559 -196870019 - MIR SINE MIR -6 256 167 653 307 34 57 chr3 30656252 30656640 -196867938 + L2 LINE L2 2933 3311 -2 1892 84 4 4 chr3 30657291 30657552 -196867026 - L1PA6 LINE L1 -1 6153 5893 19874 110 23 14 chr3 30657693 30660895 -196863683 - L1P LINE L1 -2904 3242 11 596 284 74 8 chr3 30662016 30662259 -196862319 - MIR SINE MIR -3 259 3 2329 111 0 6 chr3 30662282 30662597 -196861981 + AluSq SINE Alu 1 313 0 1988 131 0 13 chr3 30664475 30664773 -196859805 + AluSx SINE Alu 1 294 -18 27 29 0 0 chr3 30664941 30664975 -196859603 + AT_rich Low_complexity Low_complexity 1 34 0 266 260 32 8 chr3 30665360 30665483 -196859095 + L1ME4a LINE L1 4479 4604 -1542 332 337 81 50 chr3 30665513 30665644 -196858934 + L1ME4a LINE L1 4629 4754 -1392 1859 147 0 7 chr3 30665644 30665929 -196858649 + AluJb SINE Alu 1 283 -29 332 337 81 50 chr3 30665929 30666215 -196858363 + L1ME4a LINE L1 4754 5059 -1087 1134 275 115 15 chr3 30666410 30666872 -196857706 - LTR33 LTR ERVL -2 519 12 367 294 20 6 chr3 30667118 30667320 -196857258 + L1ME4a LINE L1 5679 5884 -237 20821 172 26 18 chr3 30668267 30669740 -196854838 + L1PA13 LINE L1 984 2443 -5158 2477 7 0 7 chr3 30669740 30670015 -196854563 - AluYa5 SINE Alu 0 311 39 20821 172 26 18 chr3 30670015 30670413 -196854165 + L1PA13 LINE L1 2443 2836 -4765 1913 139 28 3 chr3 30670413 30670701 -196853877 + AluSx SINE Alu 1 295 -17 20821 172 26 18 chr3 30670701 30670852 -196853726 + L1PA13 LINE L1 2836 2984 -4617 1771 167 43 32 chr3 30670852 30671223 -196853355 + THE1C LTR MaLR 1 375 0 20821 172 26 18 chr3 30671223 30674960 -196849618 + L1PA13 LINE L1 2984 7601 0 26 30 0 0 chr3 30674981 30675014 -196849564 + AT_rich Low_complexity Low_complexity 1 33 0 207 0 0 0 chr3 30675090 30675113 -196849465 + (ATTG)n Simple_repeat Simple_repeat 4 26 0 926 225 40 24 chr3 30675361 30675610 -196848968 + MLT1F LTR MaLR 1 253 -289 214 128 0 51 chr3 30675620 30675659 -196848919 + (GGGAA)n Simple_repeat Simple_repeat 5 41 0 307 291 8 43 chr3 30675659 30675776 -196848802 + HAL1 LINE L1 1454 1566 -941 409 238 0 12 chr3 30675778 30675862 -196848716 + MIR SINE MIR 9 91 -171 247 289 72 62 chr3 30676402 30676499 -196848079 + L2 LINE L2 3139 3236 -36 747 261 63 43 chr3 30676653 30676956 -196847622 + MER93a LTR ERV1 94 402 0 327 260 36 64 chr3 30677420 30677559 -196847019 - MIR SINE MIR -57 151 20 2196 74 0 40 chr3 30677755 30678052 -196846526 - AluY SINE Alu -26 285 1 500 159 0 0 chr3 30678546 30678634 -196845944 + L1PA16 LINE L1 6070 6157 -9 245 287 85 0 chr3 30679062 30679156 -196845422 + MER94 DNA DNA 10 111 -23 448 325 45 51 chr3 30679182 30679514 -196845064 + L1ME4a LINE L1 5621 5950 -171 732 191 0 40 chr3 30679518 30679670 -196844908 - MER45A DNA AcHobo 0 178 33 1632 198 18 9 chr3 30679673 30680011 -196844567 - MLT1A1 LTR MaLR -2 363 23 244 381 9 0 chr3 30680284 30680389 -196844189 - MER5B DNA MER1_type -5 173 68 31651 84 16 13 chr3 30681031 30684995 -196839583 - L1PA6 LINE L1 -3 6151 2200 2693 75 17 0 chr3 30684995 30685356 -196839222 + L1PA5 LINE L1 5786 6152 -2 31651 84 16 13 chr3 30685356 30685382 -196839196 - L1PA6 LINE L1 -3954 2200 2176 246 32 0 0 chr3 30685382 30685413 -196839165 + (TA)n Simple_repeat Simple_repeat 1 31 0 31651 84 16 13 chr3 30685413 30687018 -196837560 - L1PA6 LINE L1 -3978 2176 544 499 216 90 0 chr3 30687139 30687250 -196837328 - MER96 DNA MER1_type? -54 121 1 473 209 104 43 chr3 30687798 30687936 -196836642 + MER5A DNA MER1_type 11 179 -10 2672 50 0 6 chr3 30687997 30688335 -196836243 - L1PA4 LINE L1 0 6155 5820 693 0 0 0 chr3 30688335 30688416 -196836162 + L1P1 LINE L1 5678 5758 -397 1856 169 41 32 chr3 30688541 30689086 -196835492 + MLT2A2 LTR ERVL 1 554 0 382 195 88 26 chr3 30689163 30689276 -196835302 + MER20B DNA MER1_type 43 162 -621 646 288 79 16 chr3 30689632 30690127 -196834451 - MLT1G1 LTR MaLR -1 594 1 191 365 54 0 chr3 30690305 30690379 -196834199 - L2 LINE L2 -40 3232 3155 1053 368 103 15 chr3 30690446 30691185 -196833393 - L3 LINE CR1 -488 1089 286 1775 202 33 35 chr3 30691211 30691697 -196832881 - L1ME1 LINE L1 -38 6128 5644 551 271 42 24 chr3 30691972 30692138 -196832440 - MIR SINE MIR -15 247 79 2057 196 88 13 chr3 30693167 30693723 -196830855 - L1ME2 LINE L1 -9 6155 5558 690 286 118 0 chr3 30694894 30695114 -196829464 + MER119 DNA MER1_type 4 249 -334 7328 38 1 2 chr3 30697149 30698358 -196826220 + L1PA4 LINE L1 4945 6154 -1 3726 32 6 8 chr3 30698439 30698932 -196825646 + L1P LINE L1 4138 4629 -1517 435 282 42 28 chr3 30700614 30700756 -196823822 - MIR SINE MIR -117 145 2 474 319 84 11 chr3 30700896 30701087 -196823491 - MIR SINE MIR -47 215 11 1657 253 48 42 chr3 30701916 30702391 -196822187 - L1ME2 LINE L1 -1355 4791 4307 1694 182 0 14 chr3 30702391 30702677 -196821901 - AluJo SINE Alu -24 288 7 1657 253 48 42 chr3 30702677 30703099 -196821479 - L1ME2 LINE L1 -1839 4307 3889 2367 29 0 7 chr3 30703100 30703375 -196821203 - AluY SINE Alu 0 311 39 16021 139 24 13 chr3 30703375 30703774 -196820804 + L1P LINE L1 1832 2225 -3921 1986 130 32 0 chr3 30703774 30704059 -196820519 + AluSx SINE Alu 1 294 -18 16021 139 24 13 chr3 30704059 30704210 -196820368 + L1P LINE L1 2225 2373 -3773 1659 164 57 33 chr3 30704210 30704576 -196820002 + THE1C LTR MaLR 1 375 0 16021 139 24 13 chr3 30704576 30706921 -196817657 + L1P LINE L1 2373 4761 -1385 21 57 0 0 chr3 30707680 30707715 -196816863 + AT_rich Low_complexity Low_complexity 1 35 0 2113 90 0 4 chr3 30707866 30708173 -196816405 + AluSc SINE Alu 3 308 0 1161 93 0 83 chr3 30708173 30708378 -196816200 + MER4B LTR ERV1 20 207 -403 1973 127 17 0 chr3 30708383 30708675 -196815903 + AluSx SINE Alu 1 297 -15 1899 179 16 25 chr3 30708872 30709240 -196815338 + MLT1A1 LTR MaLR 1 365 0 634 235 105 6 chr3 30710820 30710982 -196813596 - MER20 DNA MER1_type -4 215 38 842 178 29 7 chr3 30711098 30711289 -196813289 + MLT1D LTR MaLR 1 168 -337 480 223 67 76 chr3 30711333 30711557 -196813021 - L2 LINE L2 -65 3248 3027 465 242 159 19 chr3 30712994 30713081 -196811497 + MER5A DNA MER1_type 10 83 -106 2234 162 44 12 chr3 30713081 30713494 -196811084 - MSTB LTR MaLR 0 426 1 465 242 159 19 chr3 30713494 30713563 -196811015 + MER5A DNA MER1_type 83 188 -1 9913 39 1 2 chr3 30714206 30716100 -196808478 + L1PA5 LINE L1 4138 6028 -126 2359 139 5 1 chr3 30716206 30716741 -196807837 + L1PA13 LINE L1 1942 2488 -4309 2314 70 17 23 chr3 30716741 30717042 -196807536 - AluSx SINE Alu -13 299 1 3683 188 38 59 chr3 30717774 30718763 -196805815 + LTR5 LTR ERVK 1 969 0 2293 72 0 46 chr3 30718980 30719286 -196805292 - AluY SINE Alu -19 292 1 264 232 167 43 chr3 30719466 30719604 -196804974 + L2 LINE L2 3158 3312 -1 13890 94 22 18 chr3 30719902 30721932 -196802646 - L1P LINE L1 -3565 2581 544 541 216 90 0 chr3 30722053 30722164 -196802414 - MER96 DNA MER1_type? -54 121 1 14160 107 17 5 chr3 30722704 30724883 -196799695 - L1P LINE L1 -1562 4584 2379 1948 114 19 45 chr3 30725379 30725687 -196798891 - AluSx SINE Alu -12 300 1 21 82 0 0 chr3 30726059 30726108 -196798470 + AT_rich Low_complexity Low_complexity 1 49 0 947 275 25 11 chr3 30726397 30726681 -196797897 - MLT1H LTR MaLR -261 288 1 1085 152 69 73 chr3 30726722 30727084 -196797494 + MER31A LTR ERV1 10 483 -2 9674 87 43 3 chr3 30728106 30729614 -196794964 + L1P LINE L1 2175 3743 -2403 324 102 0 0 chr3 30730642 30730691 -196793887 + (CA)n Simple_repeat Simple_repeat 1 49 0 7108 62 14 1 chr3 30731703 30732937 -196791641 - L1PA5 LINE L1 -28 6126 4878 556 186 57 71 chr3 30733759 30733899 -196790679 - L1M3f LINE L1 -4946 382 245 208 332 12 12 chr3 30734325 30734433 -196790145 + MER5A DNA MER1_type 35 130 -48 373 189 123 0 chr3 30735396 30735518 -196789060 + MLT1B LTR MaLR 249 385 -5 184 267 89 11 chr3 30735705 30735795 -196788783 + MIR SINE MIR 47 143 -119 3304 169 25 53 chr3 30737196 30737970 -196786608 + L1MC1 LINE L1 5566 6317 -16 1795 196 78 89 chr3 30738008 30738558 -196786020 - MLT1E1 LTR MaLR -100 554 11 2270 201 97 23 chr3 30741077 30741595 -196782983 + MER68 LTR ERV1 1 556 -6 731 120 0 0 chr3 30743606 30743714 -196780864 + L1MA2 LINE L1 6197 6304 0 2039 123 14 0 chr3 30743879 30744172 -196780406 - AluSc SINE Alu -12 297 1 2153 117 28 3 chr3 30744372 30744697 -196779881 + MLT2A2 LTR ERVL 76 408 -45 360 190 0 0 chr3 30744700 30744779 -196779799 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 310 164 0 0 chr3 30744779 30744834 -196779744 + MLT2A2 LTR ERVL 399 453 0 775 139 7 33 chr3 30744856 30745007 -196779571 - L1MCa LINE L1 -5228 1198 1052 1372 115 24 5 chr3 30745007 30745216 -196779362 - pTR5 LTR ERV1 -2054 384 172 309 174 47 35 chr3 30745219 30745305 -196779273 - LTR30 LTR ERV1 -80 642 556 1774 204 26 24 chr3 30746126 30746588 -196777990 + L1M4 LINE L1 3474 3936 -2210 287 269 194 16 chr3 30746786 30746972 -196777606 - L1ME LINE L1 -284 5837 5619 5177 116 41 4 chr3 30747932 30749008 -196775570 - L1PA6 LINE L1 -162 5992 4874 10651 71 12 5 chr3 30749220 30750676 -196773902 + L1P LINE L1 1354 2819 -3327 1387 179 13 4 chr3 30750953 30751188 -196773390 - AluJo SINE Alu -75 237 1 320 208 30 10 chr3 30751188 30751289 -196773289 - Charlie2 DNA MER1_type -88 2774 2672 428 367 43 14 chr3 30751347 30751715 -196772863 + L1MEc LINE L1 55 433 -5963 23 0 0 0 chr3 30752033 30752056 -196772522 + AT_rich Low_complexity Low_complexity 1 23 0 2120 226 88 17 chr3 30752379 30752902 -196771676 + MLT1F1 LTR MaLR 6 565 -2 1023 214 0 0 chr3 30753951 30754138 -196770440 - MER5A DNA MER1_type -2 187 1 1740 241 77 20 chr3 30755363 30755970 -196768608 - L1M4 LINE L1 -3176 2970 2329 2214 118 49 29 chr3 30755975 30756322 -196768256 + THE1B LTR MaLR 11 364 0 3514 151 7 126 chr3 30756322 30757360 -196767218 + THE1B-int LTR MaLR 1 914 -666 2600 233 3 9 chr3 30757822 30758398 -196766180 + HERVK13 LTR ERVK 4572 5144 -2972 3546 43 5 0 chr3 30758401 30758816 -196765762 - LTR13 LTR ERVK -528 479 63 515 234 58 13 chr3 30759140 30759294 -196765284 + MIR SINE MIR 102 262 0 1571 220 35 8 chr3 30759476 30759849 -196764729 + MER1A DNA MER1_type 1 383 -146 1119 229 9 0 chr3 30760226 30760449 -196764129 - MLT1A1 LTR MaLR -2 363 139 225 94 0 0 chr3 30761701 30761733 -196762845 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1076 188 0 21 chr3 30761741 30761933 -196762645 - AluJo SINE Alu -38 274 87 236 143 95 0 chr3 30761950 30761992 -196762586 - L1ME2 LINE L1 -39 6125 6080 248 59 29 0 chr3 30762019 30762053 -196762525 - MER3 DNA MER1_type -160 49 15 481 258 138 45 chr3 30762053 30762386 -196762192 - L1ME3 LINE L1 -143 6019 5656 33 0 0 0 chr3 30762413 30762446 -196762132 + AT_rich Low_complexity Low_complexity 1 33 0 1652 157 0 4 chr3 30762921 30763170 -196761408 - AluJb SINE Alu -64 248 1 936 215 31 19 chr3 30763174 30763435 -196761143 + MER4-int LTR ERV1 2617 2880 -2056 576 212 52 57 chr3 30763481 30763775 -196760803 + MER4-int LTR ERV1 2552 5003 -1595 23 33 0 0 chr3 30764914 30764944 -196759634 + AT_rich Low_complexity Low_complexity 1 30 0 251 194 65 12 chr3 30765193 30765363 -196759215 + (TA)n Simple_repeat Simple_repeat 2 180 0 1348 68 2 70 chr3 30765508 30765833 -196758745 + L1PA6 LINE L1 5207 5512 -642 2690 92 7 30 chr3 30766111 30766546 -196758032 + L1PA6 LINE L1 5714 6138 -16 22 35 0 0 chr3 30767905 30767934 -196756644 + AT_rich Low_complexity Low_complexity 1 29 0 2183 168 29 5 chr3 30768629 30769046 -196755532 + L1MC1 LINE L1 5888 6314 -19 4764 181 34 20 chr3 30769671 30770661 -196753917 - L1M1 LINE L1 -4065 1263 342 363 236 42 24 chr3 30770793 30770958 -196753620 + L1ME LINE L1 5652 5819 -347 192 77 0 0 chr3 30771460 30771486 -196753092 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 229 282 242 8 chr3 30776728 30776852 -196747726 + L2 LINE L2 2602 2754 -560 534 277 19 42 chr3 30777098 30777311 -196747267 - L1M4 LINE L1 -3549 2597 2390 471 63 0 0 chr3 30777870 30777933 -196746645 + (TA)n Simple_repeat Simple_repeat 2 64 0 216 97 0 0 chr3 30778426 30778457 -196746121 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 292 233 0 58 chr3 30778550 30778636 -196745942 - MER5C DNA MER1_type 0 324 244 414 240 16 33 chr3 30778668 30778789 -196745789 - MER5C DNA MER1_type -204 120 2 1191 185 0 30 chr3 30779322 30779587 -196744991 + L1 LINE L1 4119 4375 -1771 604 192 13 53 chr3 30780539 30780690 -196743888 + MER63 DNA MER1_type 1 771 -291 473 302 20 35 chr3 30782183 30782385 -196742193 + MLT1J2 LTR MaLR 29 227 -223 34 24 0 0 chr3 30782676 30782717 -196741861 + AT_rich Low_complexity Low_complexity 1 41 0 1469 197 35 3 chr3 30783141 30783431 -196741147 + AluJo SINE Alu 4 302 0 363 165 9 122 chr3 30783450 30783565 -196741013 + Charlie5 DNA MER1_type 2523 2624 0 659 316 65 11 chr3 30783626 30783904 -196740674 + LTR16C LTR ERVL 107 399 -92 298 276 32 76 chr3 30784206 30784391 -196740187 + Charlie8 DNA MER1_type 89 265 -2152 823 212 33 11 chr3 30784875 30785059 -196739519 - MER5A DNA MER1_type 0 189 2 2038 115 3 0 chr3 30786946 30787241 -196737337 - AluSx SINE Alu -16 296 1 1860 135 20 7 chr3 30787245 30787542 -196737036 - AluSx SINE Alu -11 301 1 2130 86 24 0 chr3 30788371 30788540 -196736038 - AluY SINE Alu -12 299 119 300 27 0 0 chr3 30788540 30788577 -196736001 + (TG)n Simple_repeat Simple_repeat 2 38 0 2130 86 24 0 chr3 30788577 30788699 -196735879 - AluY SINE Alu -192 119 1 501 292 49 38 chr3 30789636 30789821 -196734757 + MIR SINE MIR 7 193 -69 543 309 69 18 chr3 30790066 30790283 -196734295 - MIR SINE MIR -27 235 8 484 339 7 18 chr3 30791575 30791936 -196732642 + C-rich Low_complexity Low_complexity 1 356 0 353 214 69 28 chr3 30793007 30793152 -196731426 + AluJb SINE Alu 8 158 -144 2050 114 0 16 chr3 30793454 30793761 -196730817 + AluSx SINE Alu 1 302 -10 1253 93 88 5 chr3 30794685 30794879 -196729699 - AluSg SINE Alu -88 222 13 2053 103 0 0 chr3 30796317 30796589 -196727989 + AluY SINE Alu 16 287 -24 1756 103 4 4 chr3 30796589 30796840 -196727738 + AluY SINE Alu 50 301 -10 239 294 35 35 chr3 30796851 30797082 -196727496 + L1 LINE L1 4442 4672 -1474 28835 33 8 0 chr3 30847462 30851719 -196672859 + L1PA4 LINE L1 1860 6152 -3 198 231 115 64 chr3 30851907 30851985 -196672593 - MIR SINE MIR -83 125 44 180 286 0 41 chr3 30852124 30852173 -196672405 - L3b LINE CR1 -25 1558 1512 478 314 49 29 chr3 30852399 30852644 -196671934 + MER102b DNA MER1_type 89 338 -3 183 100 0 0 chr3 30852724 30852754 -196671824 + (CAAAAA)n Simple_repeat Simple_repeat 1 30 0 9857 58 3 1 chr3 30853273 30854530 -196670048 - L1P LINE L1 -4264 1882 623 769 52 0 0 chr3 30854528 30854625 -196669953 - L1P LINE L1 -6048 98 2 * 204 284 172 37 chr3 30855288 30855422 -196669156 - MIR3 SINE MIR -2 206 55 532 276 24 0 chr3 30855458 30855581 -196668997 - MER58A DNA MER1_type 0 126 1 3131 134 60 6 chr3 30855659 30856159 -196668419 + MER1A DNA MER1_type 1 527 0 4108 162 151 82 chr3 30857091 30858372 -196666206 - Charlie1a DNA MER1_type -82 1373 5 845 223 0 0 chr3 30858444 30858610 -196665968 - FRAM SINE Alu -7 169 4 200 109 0 43 chr3 30859960 30860006 -196664572 + (TAAAAA)n Simple_repeat Simple_repeat 5 48 0 556 236 0 24 chr3 30860598 30860725 -196663853 - FLAM_A SINE Alu -9 124 1 365 282 0 0 chr3 30861085 30861163 -196663415 - L2 LINE L2 -7 3265 3188 376 223 182 104 chr3 30861395 30861479 -196663099 - MIR SINE MIR -19 243 167 2293 93 3 0 chr3 30861479 30861768 -196662810 - AluSq SINE Alu -23 290 1 376 223 182 104 chr3 30861768 30861903 -196662675 - MIR SINE MIR -95 167 7 1720 167 20 29 chr3 30862281 30862420 -196662158 + AluSx SINE Alu 1 140 -172 2402 66 0 0 chr3 30862420 30862708 -196661870 + AluY SINE Alu 21 308 -3 1720 167 20 29 chr3 30862708 30862874 -196661704 + AluSx SINE Alu 140 303 -9 21 36 0 0 chr3 30863082 30863110 -196661468 + AT_rich Low_complexity Low_complexity 1 28 0 309 307 83 73 chr3 30863268 30863460 -196661118 + MER91A DNA MER1_type 2 195 -1 1785 142 0 50 chr3 30863469 30863787 -196660791 - AluJo SINE Alu -10 302 1 33 56 0 0 chr3 30863806 30863860 -196660718 + AT_rich Low_complexity Low_complexity 1 54 0 576 195 0 31 chr3 30863951 30864079 -196660499 + FLAM_A SINE Alu 13 136 -6 375 232 246 7 chr3 30864083 30864221 -196660357 + MER5A DNA MER1_type 19 189 0 240 330 0 0 chr3 30865240 30865328 -196659250 - L1MC5 LINE L1 -71 7890 7803 1759 154 29 4 chr3 30865411 30865691 -196658887 + L1MA3 LINE L1 17 303 -7262 8125 185 43 29 chr3 30865800 30868561 -196656017 + L1MA3 LINE L1 3709 6430 -1294 1466 171 57 18 chr3 30868561 30868842 -196655736 + AluSx SINE Alu 1 292 -20 8125 185 43 29 chr3 30868842 30869571 -196655007 + L1MA3 LINE L1 6430 7444 -280 183 42 0 0 chr3 30869571 30869595 -196654983 + (TA)n Simple_repeat Simple_repeat 2 25 0 8125 185 43 29 chr3 30869595 30869873 -196654705 + L1MA3 LINE L1 7444 7717 -7 180 77 0 0 chr3 30870029 30870055 -196654523 + (TAA)n Simple_repeat Simple_repeat 2 27 0 24 53 0 0 chr3 30870235 30870273 -196654305 + AT_rich Low_complexity Low_complexity 1 38 0 605 213 122 6 chr3 30870620 30870784 -196653794 - MER5A DNA MER1_type 0 189 7 1527 145 35 91 chr3 30870787 30871105 -196653473 - AluJb SINE Alu -12 300 1 1526 254 80 3 chr3 30872054 30872443 -196652135 + MLT1G1 LTR MaLR 167 585 -10 603 184 0 0 chr3 30872598 30872701 -196651877 + AluJb SINE Alu 194 296 -16 1622 179 7 49 chr3 30873033 30873341 -196651237 + AluJo SINE Alu 1 295 -17 1040 324 135 4 chr3 30873883 30874356 -196650222 + L3 LINE CR1 1028 1562 -15 1804 147 28 7 chr3 30875165 30875450 -196649128 + AluSx SINE Alu 1 291 -21 849 296 75 13 chr3 30876500 30876885 -196647693 + LTR16B LTR ERVL 56 464 0 5268 139 51 68 chr3 30876904 30877258 -196647320 + Ricksha_a DNA DNA 1 360 -2901 330 183 70 0 chr3 30877258 30877329 -196647249 - FRAM/FAM SINE Alu -92 83 8 5268 139 51 68 chr3 30877329 30878141 -196646437 + Ricksha_a DNA DNA 360 1177 -14 458 123 49 0 chr3 30878406 30878487 -196646091 + L1MB8 LINE L1 6089 6173 -5 1883 152 10 20 chr3 30878594 30878897 -196645681 + AluSx SINE Alu 1 300 -12 521 307 40 31 chr3 30879405 30879633 -196644945 - MIR SINE MIR -2 260 31 1668 186 158 47 chr3 30880104 30880592 -196643986 - MLT1F LTR MaLR 0 542 1 259 325 52 0 chr3 30880636 30880713 -196643865 + MER91C DNA MER1_type 58 138 -2 867 269 53 16 chr3 30881489 30881734 -196642844 + MIR SINE MIR 6 259 -3 1127 238 77 62 chr3 30881970 30882499 -196642079 - L2 LINE L2 -265 3007 2475 388 206 165 0 chr3 30882512 30882609 -196641969 + L2 LINE L2 3200 3312 -1 30 69 0 0 chr3 30883602 30883660 -196640918 + GC_rich Low_complexity Low_complexity 1 58 0 22 35 0 0 chr3 30883765 30883794 -196640784 + GC_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr3 30883879 30883907 -196640671 + GC_rich Low_complexity Low_complexity 1 28 0 2159 133 0 3 chr3 30884375 30884676 -196639902 - AluJb SINE Alu -12 300 1 2130 92 11 0 chr3 30886022 30886303 -196638275 + AluSp SINE Alu 16 299 -14 21 95 0 0 chr3 30886428 30886491 -196638087 + AT_rich Low_complexity Low_complexity 1 63 0 890 202 6 27 chr3 30886540 30886723 -196637855 + AluJo SINE Alu 34 212 -100 191 330 41 21 chr3 30886797 30886894 -196637684 - L2 LINE L2 -1 3271 3173 1217 176 30 102 chr3 30886984 30887126 -196637452 + AluJb SINE Alu 1 113 -199 2384 69 0 47 chr3 30887126 30887446 -196637132 + AluY SINE Alu 1 305 -6 1217 176 30 102 chr3 30887446 30887598 -196636980 + AluJb SINE Alu 113 274 -38 244 325 305 0 chr3 30888234 30888385 -196636193 + MIR SINE MIR 50 246 -16 2330 109 0 0 chr3 30890553 30890865 -196633713 - AluSx SINE Alu 0 312 1 1423 179 10 76 chr3 30891437 30891739 -196632839 + AluJo SINE Alu 1 282 -30 1996 245 190 18 chr3 30891861 30892689 -196631889 - L2 LINE L2 -19 3294 2258 26 0 0 0 chr3 30892708 30892734 -196631844 + AT_rich Low_complexity Low_complexity 1 26 0 211 200 92 46 chr3 30893906 30893971 -196630607 + L2 LINE L2 3238 3305 -8 1423 180 27 14 chr3 30894097 30894392 -196630186 + L1MB7 LINE L1 5867 6165 -19 1739 161 42 25 chr3 30894728 30895082 -196629496 + MER46B DNA MER2_type 2 236 0 25 65 0 0 chr3 30895979 30896025 -196628553 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr3 30896079 30896102 -196628476 + AT_rich Low_complexity Low_complexity 1 23 0 663 153 181 0 chr3 30896455 30896599 -196627979 - MIR SINE MIR -3 259 90 1133 255 177 60 chr3 30897504 30898664 -196625914 + L2 LINE L2 2006 3310 -3 220 312 21 32 chr3 30900078 30900171 -196624407 + MIR SINE MIR 137 228 -34 1770 176 7 183 chr3 30900571 30901243 -196623335 - MLT2B3 LTR ERVL 0 554 1 505 190 141 0 chr3 30901370 30901512 -196623066 - MLT1F1 LTR MaLR 0 542 381 300 171 91 11 chr3 30901522 30901610 -196622968 + L1MA9 LINE L1 6218 6312 0 1161 244 34 93 chr3 30901611 30902050 -196622528 - MLT1F1 LTR MaLR -154 413 1 652 168 8 32 chr3 30902515 30902640 -196621938 + FLAM_C SINE Alu 2 123 -10 4715 49 3 23 chr3 30902776 30903385 -196621193 - L1PA5 LINE L1 -4 6150 5554 326 263 136 25 chr3 30903442 30903560 -196621018 + MIR3 SINE MIR 38 168 -40 25 31 0 0 chr3 30903632 30903664 -196620914 + AT_rich Low_complexity Low_complexity 1 32 0 875 96 103 0 chr3 30903665 30903801 -196620777 - L1MA2 LINE L1 -11 6293 6144 2673 122 39 2 chr3 30903802 30904213 -196620365 + MSTA LTR MaLR 3 428 0 1335 143 104 11 chr3 30904213 30904500 -196620078 - L1MA3 LINE L1 -49 6256 5943 * 19788 143 46 49 chr3 30904495 30905299 -196619279 - L1M4 LINE L1 -2952 4613 3808 2206 112 7 0 chr3 30905299 30905595 -196618983 - AluSc SINE Alu -11 298 1 19788 143 46 49 chr3 30905595 30906045 -196618533 - L1M4 LINE L1 -3757 3808 3358 1826 179 0 3 chr3 30906045 30906342 -196618236 - AluJb SINE Alu -16 296 1 19788 143 46 49 chr3 30906342 30909382 -196615196 - L1M4 LINE L1 -4207 3358 225 2110 117 57 23 chr3 30909382 30909734 -196614844 - THE1B LTR MaLR 0 364 1 19788 143 46 49 chr3 30909734 30909952 -196614626 - L1M4 LINE L1 -7340 225 8 25 0 0 0 chr3 30910062 30910087 -196614491 + AT_rich Low_complexity Low_complexity 1 25 0 875 132 0 0 chr3 30910095 30910216 -196614362 - AluJb SINE Alu -32 280 160 2110 114 35 67 chr3 30910364 30910740 -196613838 - THE1B LTR MaLR 0 364 1 24 32 0 0 chr3 30911101 30911132 -196613446 + AT_rich Low_complexity Low_complexity 1 31 0 180 77 0 0 chr3 30911147 30911173 -196613405 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 326 256 0 12 chr3 30911355 30911441 -196613137 - MIR SINE MIR -14 248 164 1911 134 62 7 chr3 30911461 30911753 -196612825 + AluSx SINE Alu 3 310 -2 728 145 357 21 chr3 30912288 30912529 -196612049 - L1MB8 LINE L1 -5 6173 5852 403 217 17 100 chr3 30912590 30912770 -196611808 - L1M4b LINE L1 -5634 1225 1061 1089 173 51 101 chr3 30912777 30913205 -196611373 - MLT1C LTR MaLR -1 466 3 537 332 63 10 chr3 30913470 30913771 -196610807 - L1M4b LINE L1 -6542 317 1 247 235 35 96 chr3 30914504 30914619 -196609959 - MIR3 SINE MIR -18 190 83 22 0 0 0 chr3 30914818 30914840 -196609738 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 30914919 30914941 -196609637 + AT_rich Low_complexity Low_complexity 1 22 0 320 216 72 84 chr3 30915008 30915175 -196609403 - MIR SINE MIR -6 256 92 942 219 54 0 chr3 30915366 30915590 -196608988 + MER46A DNA MER2_type 1 236 0 278 345 104 49 chr3 30915619 30915906 -196608672 + L2 LINE L2 2970 3272 0 2162 115 3 0 chr3 30917975 30918280 -196606298 - AluSx SINE Alu -6 306 1 3507 57 7 0 chr3 30918585 30919040 -196605538 - L1PA5 LINE L1 -1 6153 5696 1760 162 10 33 chr3 30920015 30920317 -196604261 - AluJb SINE Alu -15 297 3 986 204 0 0 chr3 30920743 30920915 -196603663 + FAM SINE Alu 1 172 -3 664 192 23 8 chr3 30922456 30922586 -196601992 - FLAM_A SINE Alu 0 133 2 2539 74 0 0 chr3 30923529 30923840 -196600738 + AluY SINE Alu 1 311 0 244 250 0 0 chr3 30924372 30924416 -196600162 + Alu SINE Alu 141 184 -116 490 115 103 11 chr3 30924416 30924503 -196600075 + L1PA8 LINE L1 6078 6172 0 25 83 0 0 chr3 30925158 30925218 -196599360 + AT_rich Low_complexity Low_complexity 1 60 0 1432 172 84 0 chr3 30925460 30925710 -196598868 + AluJb SINE Alu 13 283 -29 1860 155 10 16 chr3 30925738 30926048 -196598530 + AluJb SINE Alu 1 308 -4 4526 159 31 42 chr3 30926229 30927202 -196597376 - L1MA9 LINE L1 -4 6308 5339 1483 194 17 24 chr3 30927202 30927495 -196597083 - AluJo SINE Alu -19 293 3 4526 159 31 42 chr3 30927495 30927829 -196596749 - L1MA9 LINE L1 -973 5339 5003 434 260 158 25 chr3 30928909 30929105 -196595473 - MIR SINE MIR 0 262 41 258 143 0 0 chr3 30929252 30929301 -196595277 + (A)n Simple_repeat Simple_repeat 1 49 0 181 301 157 53 chr3 30929773 30930188 -196594390 - L2 LINE L2 -1297 2017 1560 7224 35 5 0 chr3 30930638 30931567 -196593011 - L1P LINE L1 -3570 2576 1643 21428 30 2 0 chr3 30931567 30934286 -196590292 + L1P LINE L1 2584 5307 -839 189 0 0 0 chr3 30935070 30935091 -196589487 + (T)n Simple_repeat Simple_repeat 1 21 0 3690 95 147 132 chr3 30936078 30936888 -196587690 - LTR12 LTR ERV1 0 826 5 1918 192 75 24 chr3 30936904 30937477 -196587101 - pTR5 LTR ERV1 -1094 1344 743 1642 218 71 51 chr3 30937536 30937588 -196586990 - MLT2B1 LTR ERVL 0 520 470 189 0 0 0 chr3 30937588 30937609 -196586969 + (GA)n Simple_repeat Simple_repeat 2 22 0 1642 218 71 51 chr3 30937609 30938066 -196586512 - MLT2B1 LTR ERVL -50 470 1 771 159 115 50 chr3 30938112 30938175 -196586403 + MER6B DNA MER2_type 2 59 -806 2351 44 44 14 chr3 30938175 30938471 -196586107 + AluY SINE Alu 1 305 -6 771 159 115 50 chr3 30938471 30938589 -196585989 + MER6B DNA MER2_type 59 195 -15 745 70 0 20 chr3 30938723 30938823 -196585755 + HY3 scRNA scRNA 1 98 -3 201 138 0 0 chr3 30938823 30938852 -196585726 + (TATG)n Simple_repeat Simple_repeat 3 31 0 206 281 31 31 chr3 30939196 30939260 -196585318 + polypyrimidine Low_complexity Low_complexity 2 65 0 1533 142 36 44 chr3 30939309 30939583 -196584995 - AluJb SINE Alu -40 272 1 306 283 42 60 chr3 30939644 30939810 -196584768 - L1ME LINE L1 -390 5731 5569 189 300 0 0 chr3 30939898 30939948 -196584630 - MIR SINE MIR -73 189 140 * 457 299 148 42 chr3 30939947 30940510 -196584068 - L2 LINE L2 -10 3303 2668 597 75 0 0 chr3 30941030 30941110 -196583468 - AluY SINE Alu -230 80 1 227 200 20 0 chr3 30941164 30941214 -196583364 - MIR SINE MIR -30 232 182 420 319 93 0 chr3 30941227 30941431 -196583147 - MIR SINE MIR -38 224 2 1563 139 41 30 chr3 30942019 30942285 -196582293 - AluJo SINE Alu -19 293 25 2185 113 0 7 chr3 30943649 30943950 -196580628 - AluSx SINE Alu -13 299 1 183 352 68 0 chr3 30944143 30944231 -196580347 - L2 LINE L2 -8 3264 3171 311 309 36 9 chr3 30944511 30944621 -196579957 + L1ME LINE L1 5320 5432 -730 247 357 16 0 chr3 30945495 30945624 -196578954 + CT-rich Low_complexity Low_complexity 2 132 0 203 274 0 32 chr3 30949568 30949630 -196574948 + L2 LINE L2 3231 3290 -23 411 139 0 38 chr3 30949632 30949650 -196574928 - AluJ/FRAM SINE Alu -6 306 289 956 207 13 17 chr3 30949650 30949882 -196574696 - L1MB7 LINE L1 -9 6175 5945 411 139 0 38 chr3 30949882 30949942 -196574636 - AluJ/FRAM SINE Alu -23 289 231 343 156 300 11 chr3 30949942 30950032 -196574546 - FLAM_C SINE Alu -2 131 16 815 121 18 36 chr3 30950037 30950202 -196574376 - L1MB7 LINE L1 -211 5967 5806 611 153 89 25 chr3 30950309 30950466 -196574112 - L1MB7 LINE L1 -361 5823 5657 22 0 0 0 chr3 30952845 30952867 -196571711 + AT_rich Low_complexity Low_complexity 1 22 0 206 266 0 47 chr3 30952995 30953059 -196571519 + L2 LINE L2 3207 3267 -46 569 263 93 76 chr3 30953268 30953358 -196571220 + MIR SINE MIR 5 92 -170 1719 151 55 17 chr3 30953358 30953649 -196570929 - AluJo SINE Alu -10 302 1 569 263 93 76 chr3 30953649 30953794 -196570784 + MIR SINE MIR 92 244 -18 244 256 13 0 chr3 30954700 30954778 -196569800 + HsTC2 DNA Tc2 1 79 -1819 22 0 0 0 chr3 30954914 30954936 -196569642 + AT_rich Low_complexity Low_complexity 1 22 0 1424 197 27 24 chr3 30956216 30956511 -196568067 - AluJo SINE Alu -6 296 1 384 262 142 62 chr3 30956779 30957004 -196567574 - HAL1 LINE L1 -84 2423 2181 201 310 42 14 chr3 30957951 30958022 -196566556 - MIR3 SINE MIR -26 182 110 24 32 0 0 chr3 30960521 30960552 -196564026 + AT_rich Low_complexity Low_complexity 1 31 0 1038 172 86 75 chr3 30963251 30963594 -196560984 - L1MB7 LINE L1 -8 6176 5836 1689 108 0 0 chr3 30963594 30963817 -196560761 - AluSq SINE Alu -15 298 76 1038 172 86 75 chr3 30963817 30963843 -196560735 - L1MB7 LINE L1 -348 5836 5812 3226 153 73 28 chr3 30963848 30964318 -196560260 - L1MA4 LINE L1 -2 6169 5610 2026 140 45 25 chr3 30964318 30964675 -196559903 + THE1B LTR MaLR 1 364 0 3226 153 73 28 chr3 30964675 30964976 -196559602 - L1MA4 LINE L1 -561 5610 5324 1072 144 18 6 chr3 30964984 30965144 -196559434 - AluSg/x SINE Alu -16 294 130 2142 132 13 0 chr3 30965144 30965447 -196559131 - AluSx SINE Alu -5 307 1 3979 179 44 32 chr3 30965457 30966471 -196558107 - L1MA4 LINE L1 -825 5321 4296 3441 197 26 33 chr3 30966701 30967601 -196556977 - L1 LINE L1 -1119 5027 4135 2871 193 60 21 chr3 30967602 30968695 -196555883 - L1MB7 LINE L1 -343 5823 4677 2162 128 3 0 chr3 30968803 30969107 -196555471 - AluSx SINE Alu -7 305 1 432 200 0 67 chr3 30969378 30969468 -196555110 - AluS SINE Alu -228 84 1 565 244 14 156 chr3 30972100 30972222 -196552356 - MIR SINE MIR -6 256 193 1376 98 0 10 chr3 30972222 30972425 -196552153 - L1PB1 LINE L1 -1 6150 5950 565 244 14 156 chr3 30972425 30972577 -196552001 - MIR SINE MIR -69 193 21 850 201 111 5 chr3 30972634 30972823 -196551755 + MER3 DNA MER1_type 1 209 0 196 300 88 25 chr3 30973217 30973297 -196551281 - MIR SINE MIR -84 124 40 305 349 104 52 chr3 30973398 30973429 -196551149 + L3 LINE CR1 1168 1196 -381 2334 101 0 3 chr3 30973429 30973736 -196550842 + AluSq SINE Alu 1 306 -7 305 349 104 52 chr3 30973736 30974051 -196550527 + L3 LINE CR1 1196 1532 -45 3147 209 50 71 chr3 30974392 30975240 -196549338 - MER21B LTR ERV1 -30 833 4 369 330 95 23 chr3 30977558 30977779 -196546799 + MIR SINE MIR 20 256 -6 1679 167 3 24 chr3 30978047 30978334 -196546244 - AluJo SINE Alu -31 281 1 1532 214 62 8 chr3 30978490 30978845 -196545733 + MLT1A2 LTR MaLR 1 374 0 197 194 0 119 chr3 30978959 30979026 -196545552 - L2 LINE L2 0 3272 3214 1249 286 49 22 chr3 30979718 30980377 -196544201 + LTR51 LTR ERV1 1 851 -72 22 35 0 0 chr3 30980712 30980741 -196543837 + AT_rich Low_complexity Low_complexity 1 29 0 319 256 47 0 chr3 30981901 30981987 -196542591 + L2 LINE L2 3220 3309 -4 30 27 0 0 chr3 30982954 30982991 -196541587 + AT_rich Low_complexity Low_complexity 1 37 0 200 259 24 47 chr3 30984465 30984550 -196540028 + MIR3 SINE MIR 123 205 -3 1554 154 109 27 chr3 30984554 30984892 -196539686 + MER47A DNA MER2_type 1 366 0 2323 90 3 0 chr3 30984931 30985230 -196539348 - AluSx SINE Alu -12 300 1 252 172 0 0 chr3 30987279 30987337 -196537241 - L1M4 LINE L1 -3834 2312 2255 1088 236 86 72 chr3 30987529 30988148 -196536430 - L2 LINE L2 -6 3307 2677 193 338 15 0 chr3 30988217 30988285 -196536293 + MIR3 SINE MIR 133 201 -7 1467 171 80 11 chr3 30988420 30988695 -196535883 - AluJb SINE Alu -16 296 3 405 0 0 0 chr3 30988943 30988988 -196535590 + (TG)n Simple_repeat Simple_repeat 1 45 0 283 392 20 14 chr3 30990078 30990226 -196534352 - MIR SINE MIR -94 168 20 435 19 0 0 chr3 30990405 30990458 -196534120 - MADE1 DNA Mariner 0 80 28 1771 157 3 20 chr3 30991809 30992102 -196532476 - AluJo SINE Alu -24 288 1 32 0 0 0 chr3 30992385 30992417 -196532161 + AT_rich Low_complexity Low_complexity 1 32 0 2008 140 3 3 chr3 30993126 30993426 -196531152 + AluJb SINE Alu 1 300 -12 476 341 115 69 chr3 30993602 30994282 -196530296 - L2 LINE L2 0 3272 2568 4557 206 102 34 chr3 30994505 30995815 -196528763 + L1MC4a LINE L1 6404 7803 -5 185 333 16 56 chr3 30996289 30996415 -196528163 - MIR SINE MIR -110 152 32 418 261 183 7 chr3 30997515 30997668 -196526910 - MIR SINE MIR 0 262 83 1175 171 50 0 chr3 30998455 30998654 -196525924 - AluJb SINE Alu -15 297 89 2029 127 14 0 chr3 30999561 30999853 -196524725 + AluSx SINE Alu 1 296 -16 1093 201 149 19 chr3 30999918 31000226 -196524352 - L1ME3A LINE L1 -80 6090 5743 551 204 24 108 chr3 31000896 31001063 -196523515 + AluJo SINE Alu 58 210 -102 24 0 0 0 chr3 31001085 31001109 -196523469 + AT_rich Low_complexity Low_complexity 1 24 0 202 196 65 0 chr3 31001115 31001161 -196523417 + L2 LINE L2 3224 3272 0 4924 54 2 0 chr3 31003372 31003980 -196520598 + L1PA6 LINE L1 5543 6151 -3 216 0 0 0 chr3 31004113 31004137 -196520441 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 367 22 0 0 chr3 31004239 31004285 -196520293 + L1PA6 LINE L1 6107 6152 -2 35609 43 2 3 chr3 31005512 31009931 -196514647 + L1P LINE L1 3 4418 -1728 752 189 24 0 chr3 31010031 31010195 -196514383 - L1P LINE L1 -844 5302 5135 362 316 47 23 chr3 31010514 31010685 -196513893 + L2 LINE L2 3138 3312 -1 33 0 0 0 chr3 31011283 31011316 -196513262 + AT_rich Low_complexity Low_complexity 1 33 0 197 321 0 0 chr3 31012050 31012106 -196512472 + MIR SINE MIR 49 104 -158 22 35 0 0 chr3 31012384 31012413 -196512165 + AT_rich Low_complexity Low_complexity 1 29 0 1694 166 28 7 chr3 31012892 31013176 -196511402 + AluJb SINE Alu 1 290 -22 186 103 0 0 chr3 31013600 31013629 -196510949 + (CA)n Simple_repeat Simple_repeat 2 30 0 300 295 160 19 chr3 31013848 31014004 -196510574 + MLT1I LTR MaLR 44 221 -188 270 232 64 56 chr3 31014005 31014130 -196510448 + MLT1J2 LTR MaLR 272 397 -53 * 410 148 0 74 chr3 31014128 31014209 -196510369 - Charlie3 DNA MER1_type -8 2702 2628 305 209 15 0 chr3 31014212 31014279 -196510299 + MLT1I LTR MaLR 340 407 -2 7304 31 10 0 chr3 31015639 31017276 -196507302 - L1PA3 LINE L1 -3 6152 4503 443 151 32 54 chr3 31018011 31018104 -196506474 - Tigger4(Zombi) DNA MER2_type 0 2731 2641 236 288 72 36 chr3 31018475 31018586 -196505992 - MIR SINE MIR -62 146 32 4925 226 35 13 chr3 31018952 31020220 -196504358 + L1P LINE L1 2437 3731 -2415 5290 136 19 1 chr3 31020399 31021232 -196503346 + L1PB2 LINE L1 5302 6149 -2 429 365 23 8 chr3 31021470 31021733 -196502845 + L1PA12 LINE L1 2 268 -7313 2569 247 10 22 chr3 31022295 31022988 -196501590 + L1P LINE L1 1730 2414 -3732 1714 187 0 17 chr3 31025140 31025434 -196499144 - AluJb SINE Alu -23 289 1 307 313 30 0 chr3 31025841 31025940 -196498638 + L1ME3 LINE L1 6004 6105 -57 2224 109 3 0 chr3 31025941 31026234 -196498344 + AluSx SINE Alu 3 296 -16 258 349 143 0 chr3 31027205 31027331 -196497247 + MIR SINE MIR 118 261 -1 3210 189 118 24 chr3 31027625 31028377 -196496201 - MER21B LTR ERV1 -24 839 17 3755 170 81 1 chr3 31028827 31029533 -196495045 - L1PA16 LINE L1 -2 6164 5403 * 6253 193 14 7 chr3 31029531 31030783 -196493795 - L1PA16 LINE L1 -1192 4954 3694 33000 34 4 0 chr3 31030952 31035656 -196488922 - L1PA3 LINE L1 -84 6071 1356 278 207 164 69 chr3 31037026 31037142 -196487436 - MER94 DNA DNA -3 131 5 556 203 32 16 chr3 31038119 31038242 -196486336 - FLAM_A SINE Alu -4 138 14 452 273 200 19 chr3 31040955 31041160 -196483418 + MIR SINE MIR 21 262 0 216 0 0 0 chr3 31041559 31041583 -196482995 + (A)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr3 31041643 31041672 -196482906 + AT_rich Low_complexity Low_complexity 1 29 0 294 254 127 26 chr3 31041943 31042132 -196482446 - MER113 DNA MER1_type? -313 208 1 213 77 0 51 chr3 31042542 31042566 -196482012 + (TTTA)n Simple_repeat Simple_repeat 3 26 -13 3718 16 0 0 chr3 31042566 31042993 -196481585 - L1PA2 LINE L1 0 6155 5729 213 77 0 51 chr3 31042993 31043007 -196481571 + (TTTA)n Simple_repeat Simple_repeat 26 39 0 384 316 198 4 chr3 31043044 31043281 -196481297 - L2 LINE L2 -218 3095 2813 1469 180 10 27 chr3 31043552 31043847 -196480731 - AluJo SINE Alu -22 290 1 2181 119 3 0 chr3 31045501 31045803 -196478775 - AluSx SINE Alu -9 303 1 194 346 97 30 chr3 31046233 31046470 -196478108 - L2 LINE L2 -467 2847 2595 364 359 65 0 chr3 31046568 31046738 -196477840 - L2 LINE L2 -955 2359 2179 819 224 42 0 chr3 31047319 31047484 -196477094 - AluJo/FRAM SINE Alu -7 305 134 1886 157 0 3 chr3 31047485 31047785 -196476793 - AluJb SINE Alu -13 299 1 2158 105 10 7 chr3 31047857 31048161 -196476417 - AluSg SINE Alu -5 305 1 1014 181 6 0 chr3 31048248 31048419 -196476159 - AluSg/x SINE Alu -8 302 131 1746 168 83 6 chr3 31049442 31049781 -196474797 - MLT1A1 LTR MaLR 0 365 1 28 29 0 0 chr3 31051979 31052014 -196472564 + AT_rich Low_complexity Low_complexity 1 35 0 2387 88 10 0 chr3 31052043 31052349 -196472229 + AluSg SINE Alu 1 309 -1 1001 219 55 52 chr3 31053435 31054144 -196470434 + LTR1B LTR ERV1 1 824 -2 518 269 35 51 chr3 31054307 31054504 -196470074 - MIR SINE MIR -1 261 68 28 29 0 0 chr3 31054889 31054924 -196469654 + AT_rich Low_complexity Low_complexity 1 35 0 191 196 174 0 chr3 31055582 31055628 -196468950 - L2 LINE L2 0 3272 3219 472 242 18 147 chr3 31055693 31055928 -196468650 + MIR SINE MIR 19 219 -43 305 315 195 31 chr3 31056093 31056605 -196467973 - L2 LINE L2 -205 3067 2454 285 350 114 24 chr3 31056619 31056715 -196467863 - L2 LINE L2 -2940 374 288 922 222 5 5 chr3 31056715 31056904 -196467674 + MER5A DNA MER1_type 1 189 0 285 350 114 24 chr3 31056904 31057000 -196467578 - L2 LINE L2 -3026 288 202 1291 223 75 6 chr3 31057000 31057318 -196467260 + MER58B DNA MER1_type 2 341 0 285 350 114 24 chr3 31057318 31057413 -196467165 - L2 LINE L2 -3112 202 60 226 284 11 57 chr3 31057779 31057867 -196466711 + L1ME LINE L1 2 85 -5985 443 181 0 67 chr3 31059622 31059815 -196464763 + (TA)n Simple_repeat Simple_repeat 1 180 0 822 213 63 86 chr3 31059857 31060125 -196464453 + MIR SINE MIR 1 262 0 901 252 56 46 chr3 31060729 31061102 -196463476 - L1ME3A LINE L1 -51 6119 5743 2291 106 0 0 chr3 31061349 31061652 -196462926 + AluSx SINE Alu 1 303 -9 2062 172 22 101 chr3 31062271 31063003 -196461575 - MER44D DNA MER2_type -3 602 2 779 168 0 0 chr3 31063658 31063789 -196460789 - FLAM_A SINE Alu -2 131 1 315 0 0 0 chr3 31063928 31063963 -196460615 + (CA)n Simple_repeat Simple_repeat 2 36 0 212 200 18 0 chr3 31064090 31064145 -196460433 + CT-rich Low_complexity Low_complexity 2 57 0 758 317 124 20 chr3 31064146 31064588 -196459990 - L2 LINE L2 -1 3312 2825 312 275 127 65 chr3 31064658 31064887 -196459691 - MIR SINE MIR -15 247 5 986 150 0 7 chr3 31065015 31065168 -196459410 - AluSx SINE Alu -26 284 133 2331 88 13 0 chr3 31065169 31065474 -196459104 - AluSx SINE Alu -3 309 1 2003 111 56 10 chr3 31066859 31067147 -196457431 + AluSx SINE Alu 1 301 -11 352 325 100 0 chr3 31068511 31068671 -196455907 + MIR SINE MIR 49 224 -38 229 294 59 0 chr3 31068691 31068776 -196455802 - MIR3 SINE MIR -116 92 3 408 281 101 30 chr3 31069610 31069809 -196454769 + MIR SINE MIR 1 213 -49 522 103 0 0 chr3 31070933 31071011 -196453567 + (TG)n Simple_repeat Simple_repeat 2 79 0 1761 210 32 41 chr3 31073503 31073969 -196450609 - MLT1C LTR MaLR 0 467 6 226 356 11 0 chr3 31075549 31075636 -196448942 + MIR SINE MIR 60 147 -115 851 211 23 0 chr3 31076592 31076763 -196447815 + MER5A DNA MER1_type 1 175 -14 1574 50 0 0 chr3 31076882 31077081 -196447497 + L1PA4 LINE L1 5954 6152 -3 399 344 131 26 chr3 31077310 31077729 -196446849 + L2 LINE L2 2810 3272 0 905 129 0 0 chr3 31078308 31078440 -196446138 - MSTA LTR MaLR -296 132 1 1673 203 58 0 chr3 31078523 31078849 -196445729 + MLT1A1 LTR MaLR 19 363 -2 615 225 88 50 chr3 31079230 31079470 -196445108 - MER112 DNA MER1_type -4 256 8 4016 48 2 2 chr3 31079620 31080120 -196444458 - L1PA7 LINE L1 -1 6153 5654 4129 185 13 14 chr3 31080120 31080996 -196443582 - L1P LINE L1 -4190 1956 1082 226 115 33 16 chr3 31081190 31081251 -196443327 + C-rich Low_complexity Low_complexity 1 62 0 12513 92 18 31 chr3 31081283 31083249 -196441329 - L1P3 LINE L1 -4483 1978 11 584 81 0 23 chr3 31083249 31083335 -196441243 - AluSx SINE Alu -166 146 63 1528 185 0 50 chr3 31083711 31084013 -196440565 - AluJo SINE Alu -15 297 11 185 167 0 0 chr3 31084278 31084308 -196440270 + MER5B DNA MER1_type 25 54 -124 432 341 8 0 chr3 31084406 31084529 -196440049 + L2 LINE L2 3149 3272 0 332 271 47 54 chr3 31084897 31085026 -196439552 + L2 LINE L2 3176 3303 -10 224 337 0 24 chr3 31085080 31085163 -196439415 + MIR3 SINE MIR 127 207 -1 246 343 148 50 chr3 31085648 31085925 -196438653 + L3 LINE CR1 1230 1533 -44 2197 134 40 13 chr3 31086061 31086224 -196438354 + L1PB4 LINE L1 5699 5856 -300 1776 98 8 4 chr3 31086224 31086460 -196438118 - AluSq SINE Alu -76 237 1 2197 134 40 13 chr3 31086460 31086668 -196437910 + L1PB4 LINE L1 5856 6080 -76 36 0 0 0 chr3 31086846 31086882 -196437696 + AT_rich Low_complexity Low_complexity 1 36 0 208 304 62 36 chr3 31086973 31087085 -196437493 - L2 LINE L2 -178 3135 3021 435 231 138 50 chr3 31087087 31087247 -196437331 - Charlie8 DNA MER1_type -2152 265 92 676 264 205 23 chr3 31087348 31087651 -196436927 + L3 LINE CR1 1216 1573 -4 474 206 109 59 chr3 31089739 31089977 -196434601 - L1MC5 LINE L1 -48 7913 7664 294 315 34 55 chr3 31090013 31090159 -196434419 + MIR3 SINE MIR 49 191 -17 1357 190 125 31 chr3 31090165 31090486 -196434092 + L1MCa LINE L1 1 351 -6075 * 4728 160 56 22 chr3 31090482 31091887 -196432691 + L1MCa LINE L1 696 2241 -4185 1336 195 0 38 chr3 31091891 31092158 -196432420 + AluJb SINE Alu 1 257 -55 5347 246 44 17 chr3 31092158 31093446 -196431132 + L1MCa LINE L1 2244 3611 -2815 1174 168 188 8 chr3 31093446 31093702 -196430876 + AluJb SINE Alu 1 302 0 5347 246 44 17 chr3 31093702 31094383 -196430195 + L1MCa LINE L1 3611 4272 -2154 859 249 25 8 chr3 31094399 31094636 -196429942 + L1MCa LINE L1 4393 4633 -1793 1015 166 0 0 chr3 31094642 31094799 -196429779 - AluSg/x SINE Alu -19 291 135 257 318 30 0 chr3 31094905 31094971 -196429607 + MIR SINE MIR 12 79 -183 234 258 61 0 chr3 31094994 31095060 -196429518 - L1M4 LINE L1 -1911 4235 4166 739 190 51 0 chr3 31095094 31095252 -196429326 + MIR SINE MIR 97 262 0 1624 191 33 7 chr3 31095271 31095575 -196429003 - AluJo SINE Alu 0 312 1 274 315 98 71 chr3 31095595 31095779 -196428799 - MER5A DNA MER1_type 0 189 1 21 0 0 0 chr3 31097219 31097240 -196427338 + AT_rich Low_complexity Low_complexity 1 21 0 28 86 0 0 chr3 31097585 31097655 -196426923 + AT_rich Low_complexity Low_complexity 1 70 0 330 276 0 35 chr3 31097868 31097955 -196426623 - L2 LINE L2 -1 3312 3229 24 91 0 0 chr3 31099301 31099367 -196425211 + AT_rich Low_complexity Low_complexity 1 66 0 235 256 22 78 chr3 31100084 31100174 -196424404 - MIR SINE MIR -108 154 70 1990 221 58 2 chr3 31100176 31100587 -196423991 - LTR53 LTR ERVL -1 518 85 2017 155 9 15 chr3 31100598 31100934 -196423644 - MER1B DNA MER1_type -5 334 1 505 191 12 0 chr3 31100935 31101019 -196423559 - LTR53 LTR ERVL -434 85 1 458 207 0 0 chr3 31101337 31101424 -196423154 + AluJ/FRAM SINE Alu 214 300 -12 480 354 45 3 chr3 31101778 31102071 -196422507 + L2 LINE L2 2770 3082 -231 585 232 59 38 chr3 31102092 31102281 -196422297 + MIR SINE MIR 59 250 -12 196 281 141 25 chr3 31103035 31103156 -196421422 - L2 LINE L2 -460 2854 2720 31 0 0 0 chr3 31104711 31104742 -196419836 + AT_rich Low_complexity Low_complexity 1 31 0 2127 122 0 13 chr3 31104744 31105047 -196419531 + AluSg SINE Alu 1 299 -11 800 150 0 0 chr3 31105049 31105162 -196419416 - AluJo/FLAM SINE Alu -199 113 1 2318 53 0 60 chr3 31105993 31106312 -196418266 + AluY SINE Alu 1 300 -11 22 35 0 0 chr3 31106555 31106584 -196417994 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr3 31107042 31107066 -196417512 + AT_rich Low_complexity Low_complexity 1 24 0 21 82 0 0 chr3 31107646 31107695 -196416883 + AT_rich Low_complexity Low_complexity 1 49 0 1436 339 82 57 chr3 31108730 31110358 -196414220 - HERVL LTR ERVL -310 5344 3676 231 189 0 19 chr3 31110734 31110787 -196413791 + FAM SINE Alu 124 175 0 309 282 106 69 chr3 31110821 31111066 -196413512 - HERVL LTR ERVL -2539 3115 2862 479 291 134 49 chr3 31111209 31111553 -196413025 - HERVL LTR ERVL -2804 2681 2309 628 269 30 8 chr3 31111560 31111744 -196412834 - HERVL LTR ERVL -2939 2057 1889 370 261 114 23 chr3 31111862 31112038 -196412540 + L2 LINE L2 3118 3309 -4 253 200 0 0 chr3 31112102 31112157 -196412421 + HsTC2 DNA Tc2 3 57 -1841 1021 244 109 20 chr3 31112212 31112614 -196411964 + HsTC2 DNA Tc2 1287 1900 0 296 363 12 0 chr3 31112631 31112711 -196411867 - MER91A DNA MER1_type 0 196 116 370 261 114 23 chr3 31114604 31114780 -196409798 + L2 LINE L2 3118 3309 -4 253 200 0 0 chr3 31114844 31114899 -196409679 + HsTC2 DNA Tc2 3 57 -1841 1068 242 110 18 chr3 31114954 31115355 -196409223 + HsTC2 DNA Tc2 1287 1900 0 296 363 12 0 chr3 31115372 31115452 -196409126 - MER91A DNA MER1_type 0 196 116 839 189 99 11 chr3 31117743 31117934 -196406644 + MER3 DNA MER1_type 1 208 -1 26 30 0 0 chr3 31118135 31118168 -196406410 + AT_rich Low_complexity Low_complexity 1 33 0 427 163 59 43 chr3 31118507 31118617 -196405961 + L1MC3 LINE L1 6212 6319 -1458 494 196 152 0 chr3 31118617 31118729 -196405849 + FLAM_A SINE Alu 2 130 -3 427 163 59 43 chr3 31118729 31118745 -196405833 + L1MC3 LINE L1 6319 7777 0 312 338 21 28 chr3 31118899 31119041 -196405537 - MIR SINE MIR -121 141 1 24 67 0 0 chr3 31121682 31121727 -196402851 + AT_rich Low_complexity Low_complexity 1 45 0 8586 127 16 11 chr3 31122737 31122933 -196401645 - Tigger1 DNA MER2_type -7 2411 2218 1409 163 101 11 chr3 31122933 31123209 -196401369 + AluJo SINE Alu 1 301 -11 8586 127 16 11 chr3 31123209 31124429 -196400149 - Tigger1 DNA MER2_type -200 2218 987 663 129 17 0 chr3 31124908 31125024 -196399554 - Tigger1 DNA MER2_type -1429 989 872 1312 167 42 0 chr3 31125024 31125240 -196399338 - AluJb SINE Alu -14 298 74 4251 171 32 33 chr3 31125240 31125889 -196398689 - Tigger1 DNA MER2_type -1537 881 233 333 0 0 0 chr3 31125889 31125926 -196398652 + (TGG)n Simple_repeat Simple_repeat 1 37 0 2263 68 14 0 chr3 31125934 31126214 -196398364 - AluY SINE Alu -27 284 1 4251 171 32 33 chr3 31126214 31126437 -196398141 - Tigger1 DNA MER2_type -2192 226 1 243 159 159 16 chr3 31127902 31127965 -196396613 + MIR SINE MIR 111 182 -80 266 265 22 96 chr3 31128163 31128299 -196396279 - L2 LINE L2 -212 3060 2935 21 57 0 0 chr3 31128318 31128353 -196396225 + AT_rich Low_complexity Low_complexity 1 35 0 181 182 0 0 chr3 31128474 31128507 -196396071 - MIR SINE MIR -110 152 120 549 211 154 57 chr3 31130321 31130496 -196394082 + MIR SINE MIR 63 254 -8 380 266 7 56 chr3 31132208 31132351 -196392227 + MIR SINE MIR 77 212 -50 557 269 59 63 chr3 31132566 31132804 -196391774 - MIR SINE MIR -2 260 24 29 47 0 0 chr3 31133600 31133643 -196390935 + AT_rich Low_complexity Low_complexity 1 43 0 2298 110 0 3 chr3 31134052 31134362 -196390216 - AluSg SINE Alu 0 310 2 408 301 64 20 chr3 31134896 31135099 -196389479 + MIR SINE MIR 28 239 -23 2035 117 152 11 chr3 31135200 31135575 -196389003 - MSTA LTR MaLR 0 428 1 194 355 43 51 chr3 31135808 31135946 -196388632 + L2 LINE L2 3133 3269 -3 202 259 148 0 chr3 31136097 31136151 -196388427 + MIR SINE MIR 47 108 -154 350 279 153 33 chr3 31136206 31136421 -196388157 + MIR SINE MIR 19 259 -3 212 297 14 27 chr3 31136432 31136506 -196388072 + MIR3 SINE MIR 110 182 -26 745 227 25 17 chr3 31136506 31136789 -196387789 - MLT1A1 LTR MaLR -2 363 1 28 0 0 0 chr3 31138298 31138326 -196386252 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 31138697 31138719 -196385859 + AT_rich Low_complexity Low_complexity 1 22 0 263 290 193 21 chr3 31139874 31140019 -196384559 + MLT1J2 LTR MaLR 82 251 -199 * 706 164 182 36 chr3 31140018 31140148 -196384430 + Charlie4a DNA MER1_type 167 277 -1684 1894 130 20 27 chr3 31140148 31140447 -196384131 - AluJo SINE Alu -15 297 1 706 164 182 36 chr3 31140447 31140596 -196383982 + Charlie4a DNA MER1_type 277 487 -21 5775 82 14 9 chr3 31140933 31141845 -196382733 - L1PB1 LINE L1 -6 6145 5189 283 268 36 113 chr3 31141987 31142155 -196382423 - MIR3 SINE MIR -1 207 53 209 305 0 0 chr3 31142235 31142294 -196382284 + L2 LINE L2 1492 1550 -1764 572 304 144 45 chr3 31142322 31142884 -196381694 + L2 LINE L2 1731 2348 -966 186 286 230 16 chr3 31142908 31143034 -196381544 + L2 LINE L2 2549 2701 -613 1757 201 9 61 chr3 31143049 31143511 -196381067 - LTR47B LTR ERVL 0 443 6 1803 169 23 13 chr3 31143904 31144205 -196380373 + AluJo SINE Alu 1 304 -8 625 267 38 33 chr3 31144894 31145104 -196379474 + L2 LINE L2 3103 3313 0 2132 153 30 6 chr3 31145225 31145591 -196378987 + THE1C LTR MaLR 1 375 0 262 346 60 30 chr3 31145645 31145778 -196378800 - L2 LINE L2 0 3272 3136 1251 183 0 68 chr3 31146260 31146511 -196378067 + AluJb SINE Alu 11 244 -68 6672 180 154 37 chr3 31146528 31148097 -196376481 - MER52A LTR ERV1 0 1755 3 21 0 0 0 chr3 31150149 31150170 -196374408 + AT_rich Low_complexity Low_complexity 1 21 0 232 386 59 0 chr3 31150672 31150773 -196373805 + MIR SINE MIR 20 126 -136 291 278 39 102 chr3 31150827 31151032 -196373546 - MIR SINE MIR -1 261 70 209 333 0 0 chr3 31150980 31151043 -196373535 + MIR SINE MIR 200 262 0 * 199 353 38 49 chr3 31151592 31151776 -196372802 + L2 LINE L2 2871 3052 -220 2490 124 6 0 chr3 31152104 31152466 -196372112 - THE1B LTR MaLR 0 364 1 2087 125 13 20 chr3 31152585 31152890 -196371688 - AluSx SINE Alu -9 303 1 193 0 94 0 chr3 31153019 31153051 -196371527 + A-rich Low_complexity Low_complexity 3 37 0 4685 189 194 82 chr3 31153455 31155034 -196369544 - MER52A LTR ERV1 0 1755 1 751 239 92 14 chr3 31155051 31155269 -196369309 - MIR SINE MIR -21 241 7 209 213 43 0 chr3 31155307 31155354 -196369224 - L2 LINE L2 -2 3270 3222 21 0 0 0 chr3 31155476 31155497 -196369081 + AT_rich Low_complexity Low_complexity 1 21 0 1750 57 8 28 chr3 31155700 31155948 -196368630 - L1PA7 LINE L1 0 6154 5912 2393 134 8 5 chr3 31156596 31156969 -196367609 - MER1A DNA MER1_type 0 529 156 555 139 226 0 chr3 31157141 31157256 -196367322 - MER1A DNA MER1_type -386 141 1 316 266 0 0 chr3 31157285 31157349 -196367229 + MIR SINE MIR 84 147 -61 415 151 32 54 chr3 31157724 31157817 -196366761 + Tigger4(Zombi) DNA MER2_type 2641 2731 0 617 305 124 52 chr3 31158955 31159489 -196365089 - L2 LINE L2 -266 3006 2438 247 307 11 0 chr3 31160197 31160285 -196364293 - MIR SINE MIR -4 258 170 512 148 31 87 chr3 31160309 31160505 -196364073 - Charlie5 DNA MER1_type -40 2572 2388 262 193 70 0 chr3 31160506 31160563 -196364015 - MIR SINE MIR -102 160 100 458 333 18 24 chr3 31161452 31161620 -196362958 - MIR SINE MIR -94 168 2 873 154 82 119 chr3 31161719 31162037 -196362541 - MER33 DNA MER1_type -14 310 5 854 88 35 0 chr3 31162223 31162337 -196362241 - AluSg/x SINE Alu -13 297 180 1258 85 0 18 chr3 31162384 31162548 -196362030 - AluSq SINE Alu -132 181 21 678 275 113 10 chr3 31163996 31164305 -196360273 - L1ME3A LINE L1 -224 5929 5589 1411 147 16 16 chr3 31164305 31164563 -196360015 - Tigger2 DNA MER2_type 0 2718 2461 3722 144 53 21 chr3 31164616 31165337 -196359241 - Tigger2 DNA MER2_type -1974 744 1 579 223 70 42 chr3 31165387 31165658 -196358920 - L1ME3A LINE L1 -613 5532 5237 430 259 74 29 chr3 31165902 31166145 -196358433 - L1ME3A LINE L1 -1478 4651 4398 347 171 0 66 chr3 31166195 31166271 -196358307 + AluSp SINE Alu 137 207 -96 188 293 35 35 chr3 31166719 31166777 -196357801 + L3b LINE CR1 1517 1574 -9 468 325 58 13 chr3 31168265 31168419 -196356159 - MIR SINE MIR -98 164 4 259 239 233 31 chr3 31168885 31169044 -196355534 - MIR SINE MIR -68 194 4 610 349 32 32 chr3 31169054 31169401 -196355177 + L3 LINE CR1 1198 1544 -33 1073 173 14 9 chr3 31170670 31170890 -196353688 - AluSq SINE Alu 0 313 93 32 26 0 0 chr3 31171014 31171053 -196353525 + GC_rich Low_complexity Low_complexity 1 39 0 24 53 0 0 chr3 31171216 31171254 -196353324 + GC_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr3 31171421 31171449 -196353129 + GC_rich Low_complexity Low_complexity 1 28 0 1267 136 31 21 chr3 31171621 31172127 -196352451 - LTR60 LTR ERV1 -3 583 1 2282 203 70 2 chr3 31172127 31172655 -196351923 + L1MD2 LINE L1 5784 6347 -12 565 274 26 13 chr3 31172680 31172881 -196351697 + MIR SINE MIR 12 213 -49 631 259 137 39 chr3 31172984 31173397 -196351181 - L1ME3A LINE L1 -2985 3144 2687 478 288 71 16 chr3 31173465 31173776 -196350802 - L1ME3A LINE L1 -3528 2601 2274 596 300 51 86 chr3 31173789 31174276 -196350302 - L1ME3A LINE L1 -5648 471 2 2348 92 7 0 chr3 31174972 31175277 -196349301 + AluSq SINE Alu 1 307 -6 237 159 0 0 chr3 31175961 31176005 -196348573 + (CTA)n Simple_repeat Simple_repeat 1 44 0 2176 116 3 0 chr3 31176808 31177109 -196347469 - AluSg SINE Alu -8 302 1 189 0 0 0 chr3 31177317 31177338 -196347240 + (T)n Simple_repeat Simple_repeat 1 21 0 327 367 16 27 chr3 31178258 31178446 -196346132 + MIR SINE MIR 23 208 -54 2327 68 7 0 chr3 31178805 31179100 -196345478 - AluY SINE Alu -4 307 11 732 220 108 51 chr3 31179742 31180037 -196344541 + L1MC5 LINE L1 7603 7914 -47 775 159 29 41 chr3 31180083 31180279 -196344299 - MER6 DNA MER2_type -3 862 -62 845 159 0 0 chr3 31183103 31183248 -196341330 - FRAM SINE Alu 0 40 1 2119 108 7 0 chr3 31183440 31183753 -196340825 - AluSg SINE Alu 0 316 2 762 174 6 96 chr3 31183784 31183951 -196340627 - FRAM SINE Alu -30 146 1 819 125 0 16 chr3 31186087 31186215 -196338363 + AluJo SINE Alu 6 131 -181 5905 161 24 10 chr3 31186215 31187715 -196336863 + L1PB3 LINE L1 4094 5625 -529 8291 49 6 0 chr3 31187715 31188678 -196335900 - LTR5 LTR ERVK 0 969 1 5905 161 24 10 chr3 31188678 31189213 -196335365 + L1PB3 LINE L1 5625 6151 -3 2441 90 3 0 chr3 31189513 31189824 -196334754 - AluSp SINE Alu 0 313 2 26 30 0 0 chr3 31189836 31189869 -196334709 + AT_rich Low_complexity Low_complexity 1 33 0 307 247 225 15 chr3 31192537 31192671 -196331907 + MIR SINE MIR 37 190 -72 2136 125 0 0 chr3 31192805 31193100 -196331478 + AluSx SINE Alu 3 297 -15 1081 246 147 14 chr3 31193645 31193991 -196330587 + L1MEc LINE L1 37 428 -5968 536 245 43 93 chr3 31194007 31194309 -196330269 + L1MEc LINE L1 599 885 -5511 1456 204 38 35 chr3 31194866 31195239 -196329339 + MLT1A2 LTR MaLR 1 374 0 832 191 6 0 chr3 31195262 31195419 -196329159 + AluJo SINE Alu 136 293 -19 3521 192 46 97 chr3 31196729 31197417 -196327161 + L1MA9 LINE L1 4270 4991 -1321 948 158 18 23 chr3 31197417 31197588 -196326990 + FRAM SINE Alu 1 164 -12 3521 192 46 97 chr3 31197588 31197972 -196326606 + L1MA9 LINE L1 4991 5393 -919 2007 121 13 3 chr3 31197972 31198270 -196326308 - AluSq SINE Alu -12 301 1 3521 192 46 97 chr3 31198270 31199193 -196325385 + L1MA9 LINE L1 5393 6270 -42 2365 90 7 0 chr3 31199196 31199496 -196325082 - AluSc SINE Alu -7 302 1 32 0 0 0 chr3 31199496 31199528 -196325050 + AT_rich Low_complexity Low_complexity 1 32 0 26 64 0 0 chr3 31199816 31199863 -196324715 + AT_rich Low_complexity Low_complexity 1 47 0 4137 176 82 5 chr3 31199954 31200757 -196323821 - MER6 DNA MER2_type 0 865 1 699 164 9 9 chr3 31201835 31201951 -196322627 + FLAM_A SINE Alu 1 116 -17 1227 160 5 0 chr3 31202411 31202599 -196321979 + AluSg/x SINE Alu 98 286 -26 267 274 0 0 chr3 31202839 31202901 -196321677 + (CATATA)n Simple_repeat Simple_repeat 1 62 0 716 299 58 31 chr3 31203029 31203477 -196321101 - L1ME LINE L1 -310 5811 5352 1650 159 10 45 chr3 31203648 31203962 -196320616 - AluJb SINE Alu -9 303 1 1225 254 100 65 chr3 31204991 31205419 -196319159 + L2 LINE L2 2278 2690 -623 1617 164 4 4 chr3 31205419 31205675 -196318903 - AluJb SINE Alu -56 256 1 1225 254 100 65 chr3 31205675 31206245 -196318333 + L2 LINE L2 2690 3312 -1 385 255 39 10 chr3 31206275 31206377 -196318201 - MIR SINE MIR -110 152 48 3772 46 0 0 chr3 31208325 31208782 -196315796 - L1PA5 LINE L1 -6 6148 5692 2030 148 7 0 chr3 31209068 31209372 -196315206 + AluSx SINE Alu 3 308 -4 199 245 0 0 chr3 31209535 31209584 -196314994 - L2 LINE L2 -2 3311 3263 246 343 40 10 chr3 31209738 31209837 -196314741 - L2 LINE L2 -21 3292 3191 1003 220 19 19 chr3 31209854 31210068 -196314510 - MER20 DNA MER1_type -5 214 1 373 273 33 82 chr3 31210154 31210337 -196314241 - L2 LINE L2 -966 2348 2175 25 0 0 0 chr3 31210581 31210606 -196313972 + AT_rich Low_complexity Low_complexity 1 25 0 327 311 66 9 chr3 31210737 31210843 -196313735 - MIR3 SINE MIR -82 126 15 1529 172 0 68 chr3 31210975 31211283 -196313295 - AluJb SINE Alu -25 287 1 770 130 9 0 chr3 31211409 31211524 -196313054 + AluSq/x SINE Alu 3 118 -195 21 0 0 0 chr3 31211654 31211675 -196312903 + AT_rich Low_complexity Low_complexity 1 21 0 1101 151 17 0 chr3 31211734 31211913 -196312665 + AluSx SINE Alu 62 243 -69 303 28 0 0 chr3 31211928 31211964 -196312614 + (CATA)n Simple_repeat Simple_repeat 1 36 0 1039 285 112 16 chr3 31212346 31212847 -196311731 - L1MC4a LINE L1 -1911 5897 5349 527 260 42 34 chr3 31212987 31213258 -196311320 + L2 LINE L2 2720 3068 -245 180 0 0 0 chr3 31213595 31213615 -196310963 + (TTA)n Simple_repeat Simple_repeat 2 21 0 306 0 0 0 chr3 31214128 31214162 -196310416 + (TG)n Simple_repeat Simple_repeat 2 35 0 260 267 0 0 chr3 31214174 31214249 -196310329 + L1MC4 LINE L1 7892 7966 -76 235 282 64 0 chr3 31214389 31214467 -196310111 - L2 LINE L2 -220 3052 2970 1599 160 19 58 chr3 31214682 31214994 -196309584 + AluJo SINE Alu 1 300 -12 1336 169 0 33 chr3 31218683 31218925 -196305653 - AluJb SINE Alu -11 301 68 380 198 62 0 chr3 31219272 31219353 -196305225 + MIR SINE MIR 147 232 -30 1504 206 18 0 chr3 31219673 31219950 -196304628 - AluJo SINE Alu -30 282 1 911 123 190 0 chr3 31220650 31220714 -196303864 - MER30 DNA MER1_type -36 194 143 207 0 0 0 chr3 31220714 31220737 -196303841 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 911 123 190 0 chr3 31220737 31220835 -196303743 - MER30 DNA MER1_type -87 143 1 2494 53 0 7 chr3 31221136 31221439 -196303139 - AluY SINE Alu -10 301 1 24 0 0 0 chr3 31223226 31223250 -196301328 + AT_rich Low_complexity Low_complexity 1 24 0 488 256 94 19 chr3 31223376 31223536 -196301042 - MIR SINE MIR 0 262 91 258 269 115 29 chr3 31223592 31223696 -196300882 - MIR3 SINE MIR -5 203 91 330 45 0 0 chr3 31223857 31223901 -196300677 + (CA)n Simple_repeat Simple_repeat 2 45 0 1941 178 153 18 chr3 31223909 31224354 -196300224 - MLT1D LTR MaLR 0 505 1 183 191 235 0 chr3 31225470 31225538 -196299040 - L2 LINE L2 -3 3269 3186 21 0 0 0 chr3 31225986 31226007 -196298571 + AT_rich Low_complexity Low_complexity 1 21 0 2268 161 39 0 chr3 31226007 31226418 -196298160 + L1MC/D LINE L1 5316 5742 -617 1334 219 21 21 chr3 31226441 31226728 -196297850 + MER21B LTR ERV1 12 298 -565 2402 19 0 4 chr3 31326800 31327066 -196197512 + AluY SINE Alu 37 301 -10 248 261 165 0 chr3 31327129 31327244 -196197334 + L2 LINE L2 2625 2758 -556 1978 153 0 22 chr3 31327247 31327561 -196197017 - AluSx SINE Alu -5 307 1 1799 176 14 0 chr3 31328234 31328512 -196196066 + AluJo SINE Alu 1 282 -30 2215 122 0 25 chr3 31329166 31329510 -196195068 + AluSx SINE Alu 1 336 0 1868 157 16 0 chr3 31329511 31329817 -196194761 + AluJo SINE Alu 1 311 -1 2587 68 3 0 chr3 31329951 31330260 -196194318 - AluSq SINE Alu -3 310 1 215 163 82 20 chr3 31330476 31330525 -196194053 + L2 LINE L2 3217 3268 -4 377 131 0 0 chr3 31331342 31331403 -196193175 + MER5A DNA MER1_type 2 62 -127 1942 146 43 65 chr3 31331511 31331845 -196192733 + MLT1B LTR MaLR 3 329 -61 2254 85 11 0 chr3 31331845 31332162 -196192416 + AluSp SINE Alu 1 320 0 1942 146 43 65 chr3 31332162 31332223 -196192355 + MLT1B LTR MaLR 329 390 0 443 267 92 24 chr3 31332318 31332524 -196192054 - MIR SINE MIR -41 221 2 261 285 99 10 chr3 31332598 31332715 -196191863 - MIR SINE MIR -67 141 34 22 0 0 0 chr3 31332843 31332865 -196191713 + AT_rich Low_complexity Low_complexity 1 22 0 654 235 31 46 chr3 31333009 31333205 -196191373 + MIR SINE MIR 35 227 -35 180 111 0 0 chr3 31333577 31333604 -196190974 + (TAA)n Simple_repeat Simple_repeat 1 27 0 430 237 70 95 chr3 31333758 31333974 -196190604 + L1MC4a LINE L1 5656 5775 -346 447 54 0 0 chr3 31333974 31334030 -196190548 + L1MB8 LINE L1 6118 6173 -5 430 237 70 95 chr3 31334030 31334079 -196190499 + L1MC4a LINE L1 5775 5824 -297 216 256 137 0 chr3 31334303 31334420 -196190158 - MIR SINE MIR -6 256 124 2156 137 0 7 chr3 31334608 31334914 -196189664 - AluSx SINE Alu -8 304 1 1230 66 48 0 chr3 31334927 31335094 -196189484 - L1MA1 LINE L1 0 6302 6128 200 250 238 0 chr3 31335670 31335754 -196188824 - MIR SINE MIR -6 256 153 550 263 76 15 chr3 31336132 31336330 -196188248 - L2 LINE L2 0 3313 3104 230 204 0 0 chr3 31336409 31336453 -196188125 - L1MC4 LINE L1 -1347 6695 6652 814 236 27 16 chr3 31336469 31336656 -196187922 + MER8 DNA MER2_type 2 239 0 250 293 0 0 chr3 31336656 31336714 -196187864 + (TA)n Simple_repeat Simple_repeat 1 58 0 309 194 145 0 chr3 31336714 31336791 -196187787 - MIR SINE MIR -66 142 64 246 209 0 0 chr3 31337413 31337456 -196187122 + LTR67 LTR ERVL 500 542 -15 244 175 0 0 chr3 31337433 31337473 -196187105 + MLT1K LTR MaLR 549 588 0 * 276 343 64 10 chr3 31337585 31337789 -196186789 - L2 LINE L2 -188 3084 2870 2142 106 7 0 chr3 31337968 31338274 -196186304 - AluSp SINE Alu 0 308 1 1842 129 36 39 chr3 31338274 31338583 -196185995 - AluJo SINE Alu -4 308 1 1456 236 129 14 chr3 31338856 31339331 -196185247 - MLT1E1 LTR MaLR 0 654 62 1841 181 10 0 chr3 31339331 31339624 -196184954 + AluJo SINE Alu 1 296 -16 1456 236 129 14 chr3 31339624 31339694 -196184884 - MLT1E1 LTR MaLR -592 62 1 1075 217 120 124 chr3 31339829 31339922 -196184656 - MLT1D LTR MaLR 0 505 413 1027 172 151 79 chr3 31339922 31340052 -196184526 + AluJo SINE Alu 3 122 -180 2312 95 3 0 chr3 31340052 31340348 -196184230 + AluSp SINE Alu 6 302 -11 1027 172 151 79 chr3 31340348 31340496 -196184082 + AluJo SINE Alu 122 301 -1 1075 217 120 124 chr3 31340496 31340909 -196183669 - MLT1D LTR MaLR -92 413 1 234 0 0 0 chr3 31341310 31341336 -196183242 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 2179 111 0 29 chr3 31341423 31341730 -196182848 + AluSx SINE Alu 1 298 -14 21 36 0 0 chr3 31341730 31341758 -196182820 + AT_rich Low_complexity Low_complexity 1 28 0 2443 92 0 0 chr3 31342680 31342986 -196181592 + AluSg1 SINE Alu 1 306 -3 579 217 90 38 chr3 31343163 31343375 -196181203 + MIR SINE MIR 17 239 -23 446 274 196 38 chr3 31343456 31343740 -196180838 + L2 LINE L2 2851 3217 -96 506 209 76 19 chr3 31343740 31343845 -196180733 - MER81 DNA DNA -3 111 1 446 274 196 38 chr3 31343845 31343958 -196180620 + L2 LINE L2 3217 3311 -2 692 201 63 0 chr3 31346933 31347107 -196177471 - MER53 DNA DNA -1 188 4 355 199 46 99 chr3 31347221 31347352 -196177226 - MLT1H LTR MaLR -16 533 416 364 288 24 16 chr3 31347559 31347684 -196176894 + MIR SINE MIR 21 146 -62 873 221 55 106 chr3 31347934 31348350 -196176228 + HAL1 LINE L1 1 395 -2112 * 4177 183 21 11 chr3 31348344 31348644 -196175934 - L1MC/D LINE L1 -608 5736 5440 1924 162 30 0 chr3 31348644 31348947 -196175631 - AluJb SINE Alu 0 312 1 4177 183 21 11 chr3 31348947 31349913 -196174665 - L1MC/D LINE L1 -904 5440 4460 1563 117 160 44 chr3 31349913 31349952 -196174626 - THE1C LTR MaLR 0 375 342 1683 134 8 4 chr3 31349952 31350205 -196174373 + AluSx SINE Alu 55 308 -4 1563 117 160 44 chr3 31350205 31350483 -196174095 - THE1C LTR MaLR -33 342 31 2393 95 0 0 chr3 31350483 31350789 -196173789 + AluY SINE Alu 1 306 -5 1563 117 160 44 chr3 31350789 31350825 -196173753 - THE1C LTR MaLR -344 31 1 4458 204 24 131 chr3 31350825 31351556 -196173022 - L1MC/D LINE L1 -1682 4464 3657 840 165 31 0 chr3 31351556 31351683 -196172895 + FLAM_C SINE Alu 1 131 -12 4458 204 24 131 chr3 31351683 31351919 -196172659 - L1MC/D LINE L1 -2489 3657 3397 2368 99 3 7 chr3 31351919 31352222 -196172356 + AluSp SINE Alu 1 302 -11 4458 204 24 131 chr3 31352222 31352324 -196172254 - L1MC/D LINE L1 -2749 3397 3286 1791 175 0 20 chr3 31352324 31352627 -196171951 - AluJo SINE Alu -13 299 3 4458 204 24 131 chr3 31352627 31352883 -196171695 - L1MC/D LINE L1 -2860 3286 3252 2352 117 0 0 chr3 31352883 31353191 -196171387 - AluSg SINE Alu -2 308 1 4458 204 24 131 chr3 31353191 31353606 -196170972 - L1MC/D LINE L1 -2894 3252 2794 897 165 10 0 chr3 31353626 31353837 -196170741 + CT-rich Low_complexity Low_complexity 1 213 0 960 65 0 40 chr3 31353855 31353979 -196170599 - AluSq/x SINE Alu -193 119 1 596 243 29 0 chr3 31353990 31354130 -196170448 - L1MC/D LINE L1 -3380 2766 2623 22 35 0 0 chr3 31354961 31354990 -196169588 + AT_rich Low_complexity Low_complexity 1 29 0 2161 108 0 0 chr3 31354999 31355278 -196169300 - AluSx SINE Alu -33 279 1 1775 138 54 40 chr3 31355373 31355670 -196168908 + AluSx SINE Alu 1 301 -11 685 225 133 92 chr3 31356540 31356628 -196167950 - MLT1J LTR MaLR -22 489 406 2436 90 0 0 chr3 31356628 31356928 -196167650 + AluSp SINE Alu 2 301 -12 685 225 133 92 chr3 31356928 31357305 -196167273 - MLT1J LTR MaLR -105 406 5 215 31 31 0 chr3 31357793 31357825 -196166753 + (TA)n Simple_repeat Simple_repeat 1 33 0 1506 161 136 13 chr3 31357872 31358189 -196166389 - MLT1A1 LTR MaLR -8 357 2 437 244 41 1 chr3 31358367 31358486 -196166092 - L1ME2 LINE L1 -1 6183 6050 1525 203 17 3 chr3 31358496 31358792 -196165786 + AluJo SINE Alu 1 300 -12 2158 128 0 16 chr3 31358792 31359098 -196165480 + AluSg SINE Alu 1 301 -9 332 207 0 23 chr3 31359128 31359215 -196165363 + GA-rich Low_complexity Low_complexity 2 86 0 2207 121 7 0 chr3 31359219 31359697 -196164881 + AluSg SINE Alu 1 480 0 713 168 20 204 chr3 31359779 31359987 -196164591 - L1ME2 LINE L1 -110 6054 5938 591 202 81 8 chr3 31359987 31360111 -196164467 - FLAM_A SINE Alu 0 133 1 713 168 20 204 chr3 31360111 31360259 -196164319 - L1ME2 LINE L1 -226 5938 5764 196 281 18 0 chr3 31360261 31360318 -196164260 - MIR SINE MIR 0 262 205 2369 111 0 0 chr3 31360696 31361002 -196163576 - AluSg SINE Alu -4 306 1 293 205 8 94 chr3 31361065 31361182 -196163396 - MIR SINE MIR -105 157 51 1947 170 0 0 chr3 31361183 31361495 -196163083 + AluSx SINE Alu 1 312 0 2235 118 0 3 chr3 31362342 31362646 -196161932 - AluSx SINE Alu -9 303 1 579 252 74 26 chr3 31362732 31363075 -196161503 + LTR16A LTR ERVL 21 413 -37 429 238 34 62 chr3 31363240 31363264 -196161314 - MIR SINE MIR -62 146 123 1795 156 3 23 chr3 31363264 31363566 -196161012 - AluJo SINE Alu -16 296 1 429 238 34 62 chr3 31363566 31363719 -196160859 - MIR SINE MIR -85 123 2 2224 110 0 0 chr3 31363893 31364184 -196160394 - AluSx SINE Alu -21 291 1 814 228 46 14 chr3 31364255 31364644 -196159934 - MLT1C LTR MaLR -5 462 1 * 874 183 77 73 chr3 31364644 31364917 -196159661 - LTR37B LTR ERV1 -82 386 113 942 132 5 136 chr3 31364927 31365103 -196159475 + MER3 DNA MER1_type 11 154 -55 1649 186 16 16 chr3 31365103 31365410 -196159168 + AluJb SINE Alu 3 309 -3 942 132 5 136 chr3 31365410 31365453 -196159125 + MER3 DNA MER1_type 154 201 -8 365 224 121 0 chr3 31365453 31365569 -196159009 - LTR37B LTR ERV1 -338 130 1 357 314 70 77 chr3 31365919 31366331 -196158247 - L2 LINE L2 0 3272 2862 2408 89 3 0 chr3 31366331 31366633 -196157945 + AluSq SINE Alu 1 303 -10 357 314 70 77 chr3 31366633 31366688 -196157890 - L2 LINE L2 -410 2862 2808 235 341 66 46 chr3 31366765 31366927 -196157651 - L2 LINE L2 0 3313 3156 912 190 0 18 chr3 31366927 31367090 -196157488 + FRAM SINE Alu 2 161 -5 1605 170 58 11 chr3 31367091 31367367 -196157211 + AluJb SINE Alu 1 289 -23 2291 90 10 3 chr3 31367370 31367669 -196156909 + AluSg SINE Alu 1 301 -9 235 341 66 46 chr3 31367669 31367849 -196156729 - L2 LINE L2 -158 3155 2958 513 242 137 68 chr3 31367923 31368382 -196156196 - L1ME4a LINE L1 -68 6053 5563 259 214 135 79 chr3 31368475 31368564 -196156014 + L2 LINE L2 3199 3292 -21 319 236 143 33 chr3 31369655 31369837 -196154741 + L1MEd LINE L1 965 1166 -4953 2266 110 3 0 chr3 31369851 31370152 -196154426 + AluSx SINE Alu 1 302 -10 650 305 83 52 chr3 31370153 31370176 -196154402 + HAL1 LINE L1 1243 1264 -1243 2083 129 0 7 chr3 31370176 31370478 -196154100 - AluSx SINE Alu -10 302 3 650 305 83 52 chr3 31370478 31370949 -196153629 + HAL1 LINE L1 1264 1752 -755 1784 164 0 30 chr3 31371009 31371313 -196153265 + AluJo SINE Alu 1 295 -17 1878 72 122 11 chr3 31371316 31371579 -196152999 + AluSg1 SINE Alu 1 292 -17 2027 94 44 7 chr3 31371628 31371932 -196152646 + AluSc SINE Alu 1 314 0 1618 129 70 39 chr3 31373893 31374205 -196150373 - AluJb SINE Alu 0 312 1 414 317 35 14 chr3 31374435 31374577 -196150001 - MER96 DNA MER1_type? -28 147 3 1934 158 3 0 chr3 31374939 31375231 -196149347 + AluJo SINE Alu 1 293 -19 23 0 0 0 chr3 31376317 31376340 -196148238 + AT_rich Low_complexity Low_complexity 1 23 0 2110 118 0 22 chr3 31378361 31378675 -196145903 + AluSx SINE Alu 1 307 -5 1792 138 26 35 chr3 31379040 31379351 -196145227 - AluJb SINE Alu -3 309 2 195 42 0 0 chr3 31379451 31379475 -196145103 + (TAA)n Simple_repeat Simple_repeat 1 24 0 248 161 36 0 chr3 31379848 31379904 -196144674 + CT-rich Low_complexity Low_complexity 1 58 0 211 177 32 0 chr3 31380101 31380163 -196144415 + (TA)n Simple_repeat Simple_repeat 1 64 0 2216 96 0 13 chr3 31380164 31380467 -196144111 - AluSx SINE Alu -13 299 1 1040 160 0 0 chr3 31380537 31380687 -196143891 - FRAM SINE Alu -26 150 1 208 293 0 0 chr3 31381548 31381606 -196142972 + GA-rich Low_complexity Low_complexity 1 58 0 452 245 43 8 chr3 31381611 31381769 -196142809 + MIR SINE MIR 8 173 -67 534 256 0 16 chr3 31382245 31382370 -196142208 - MER94 DNA DNA 0 134 12 332 114 0 0 chr3 31382642 31382686 -196141892 - MLT1B LTR MaLR -1 389 346 1262 107 0 0 chr3 31382697 31382865 -196141713 + AluSg/x SINE Alu 129 296 -14 1718 160 17 0 chr3 31382865 31383159 -196141419 - MLT1B LTR MaLR -65 325 27 1371 167 70 22 chr3 31383162 31383432 -196141146 + AluJo SINE Alu 1 283 -29 213 94 0 0 chr3 31383438 31383470 -196141108 + (TA)n Simple_repeat Simple_repeat 2 33 0 296 201 4 65 chr3 31383496 31383564 -196141014 - MER104 DNA Tc2 -1806 92 37 1522 178 0 38 chr3 31383564 31383878 -196140700 + AluJo SINE Alu 1 302 -10 296 201 4 65 chr3 31383878 31383912 -196140666 - MER104 DNA Tc2 -1861 37 2 339 44 0 0 chr3 31384789 31384834 -196139744 + (TG)n Simple_repeat Simple_repeat 2 46 0 863 256 16 64 chr3 31384915 31385227 -196139351 + MER102a DNA MER1_type 34 330 0 2214 123 0 0 chr3 31385612 31385913 -196138665 - AluSq SINE Alu -4 309 9 273 290 56 28 chr3 31385957 31386064 -196138514 + MER91C DNA MER1_type 31 140 0 282 29 0 0 chr3 31386075 31386110 -196138468 + (TG)n Simple_repeat Simple_repeat 2 36 0 28 0 0 0 chr3 31386173 31386201 -196138377 + AT_rich Low_complexity Low_complexity 1 28 0 2317 77 0 3 chr3 31386451 31386774 -196137804 - AluY SINE Alu 0 322 1 22 0 0 0 chr3 31386774 31386796 -196137782 + AT_rich Low_complexity Low_complexity 1 22 0 384 231 0 65 chr3 31386800 31386908 -196137670 - MER5A DNA MER1_type -80 109 9 22 0 0 0 chr3 31387004 31387026 -196137552 + AT_rich Low_complexity Low_complexity 1 22 0 1963 114 35 44 chr3 31387026 31387151 -196137427 - L1MB3 LINE L1 -7 6176 6051 2111 135 3 3 chr3 31387151 31387448 -196137130 + AluSx SINE Alu 1 297 -15 1963 114 35 44 chr3 31387448 31387664 -196136914 - L1MB3 LINE L1 -132 6051 5838 1533 174 12 70 chr3 31387672 31387999 -196136579 - AluJb SINE Alu -4 308 1 716 219 31 26 chr3 31388411 31388603 -196135975 - MIR SINE MIR -23 239 47 1196 235 78 16 chr3 31389695 31390014 -196134564 - L1MC4 LINE L1 -138 7904 7566 1252 114 0 11 chr3 31390014 31390189 -196134389 - AluSg/x SINE Alu -14 298 126 2002 106 0 18 chr3 31390190 31390465 -196134113 - AluSg SINE Alu -18 292 23 2131 107 3 7 chr3 31390468 31390759 -196133819 - AluSx SINE Alu -21 291 2 880 238 181 0 chr3 31390767 31391048 -196133530 - L1MC4 LINE L1 -473 7569 7238 2413 93 3 0 chr3 31391092 31391403 -196133175 - AluSx SINE Alu 0 312 1 2285 93 0 7 chr3 31392195 31392495 -196132083 - AluSx SINE Alu -14 298 1 2428 101 0 0 chr3 31392896 31393203 -196131375 + AluSq SINE Alu 1 307 -6 383 349 32 24 chr3 31393204 31393453 -196131125 - MIR SINE MIR -2 260 10 203 274 104 96 chr3 31394591 31394726 -196129852 - MIR3 SINE MIR -60 148 13 351 310 21 35 chr3 31394915 31395060 -196129518 + MER91A DNA MER1_type 1 143 -53 278 250 90 20 chr3 31395070 31395170 -196129408 + MER91A DNA MER1_type 86 192 -4 413 267 78 30 chr3 31395175 31395419 -196129159 + MLT1K LTR MaLR 30 320 -268 300 235 106 12 chr3 31395500 31395585 -196128993 + MLT1K LTR MaLR 496 588 0 228 135 0 0 chr3 31396024 31396061 -196128517 + (A)n Simple_repeat Simple_repeat 1 37 0 213 39 0 0 chr3 31396104 31396130 -196128448 + (TC)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr3 31396647 31396669 -196127909 + AT_rich Low_complexity Low_complexity 1 22 0 23 65 0 16 chr3 31396762 31396802 -196127776 + AT_rich Low_complexity Low_complexity 1 41 -20 2419 32 4 0 chr3 31396802 31397080 -196127498 + AluY SINE Alu 1 279 -32 23 65 0 16 chr3 31397080 31397101 -196127477 + AT_rich Low_complexity Low_complexity 41 61 0 351 0 0 0 chr3 31397101 31397140 -196127438 + (TTA)n Simple_repeat Simple_repeat 2 40 0 318 302 151 0 chr3 31397844 31397970 -196126608 + MIR SINE MIR 48 192 -70 1866 132 3 33 chr3 31397972 31398275 -196126303 + AluSx SINE Alu 1 294 -18 843 211 53 35 chr3 31398940 31399173 -196125405 + MLT1D LTR MaLR 5 228 -239 2433 90 0 3 chr3 31399216 31399528 -196125050 - AluY SINE Alu 0 311 1 1711 149 10 35 chr3 31399529 31399817 -196124761 - AluJb SINE Alu -13 299 19 2298 101 0 25 chr3 31399991 31400308 -196124270 - AluSx SINE Alu -3 309 1 1000 183 0 0 chr3 31400314 31400489 -196124089 - FRAM SINE Alu 0 176 2 417 264 182 0 chr3 31400708 31400856 -196123722 - MER5A DNA MER1_type -8 181 7 313 148 0 0 chr3 31401393 31401447 -196123131 - L1MC4 LINE L1 0 8042 7989 3298 162 43 14 chr3 31401450 31401975 -196122603 + L1MB5 LINE L1 5550 6095 -79 2108 111 24 0 chr3 31401975 31402273 -196122305 - AluY SINE Alu -6 305 1 3298 162 43 14 chr3 31402273 31402322 -196122256 + L1MB5 LINE L1 6095 6141 -33 1327 181 4 26 chr3 31402322 31402548 -196122030 + AluJo SINE Alu 1 221 -91 458 195 0 0 chr3 31402624 31402701 -196121877 + AluJo SINE Alu 223 299 -13 236 81 0 0 chr3 31402701 31402738 -196121840 + L1MB5 LINE L1 6132 6168 -6 2132 105 21 0 chr3 31402755 31403040 -196121538 + AluSg SINE Alu 1 291 -19 1955 213 65 44 chr3 31403089 31403629 -196120949 - L1MC4 LINE L1 -194 7848 7298 1719 65 0 30 chr3 31403638 31403869 -196120709 + AluY SINE Alu 88 311 0 2066 138 0 0 chr3 31404122 31404419 -196120159 + AluSx SINE Alu 1 297 -15 2264 99 0 3 chr3 31405200 31405494 -196119084 - AluSx SINE Alu -19 293 1 2211 113 7 0 chr3 31405504 31405796 -196118782 - AluSq SINE Alu -19 294 1 37 52 0 0 chr3 31405873 31405931 -196118647 + AT_rich Low_complexity Low_complexity 1 58 0 768 184 0 75 chr3 31405994 31406168 -196118410 + AluJo SINE Alu 121 281 -31 1943 116 14 130 chr3 31406363 31406393 -196118185 + MER47A DNA MER2_type 1 33 -2290 1814 186 10 0 chr3 31406393 31406688 -196117890 - AluJb SINE Alu -14 298 1 1943 116 14 130 chr3 31406688 31406811 -196117767 + MER47A DNA MER2_type 33 169 -2154 2292 102 0 20 chr3 31406811 31407115 -196117463 + AluSx SINE Alu 1 298 -14 1943 116 14 130 chr3 31407115 31407153 -196117425 + MER47A DNA MER2_type 169 210 -2113 1757 170 31 7 chr3 31407153 31407442 -196117136 + AluJo SINE Alu 1 296 -16 1943 116 14 130 chr3 31407442 31407662 -196116916 + MER47A DNA MER2_type 210 366 0 189 0 0 0 chr3 31408271 31408292 -196116286 + (TA)n Simple_repeat Simple_repeat 1 21 0 1182 247 128 10 chr3 31408359 31408772 -196115806 + LTR16C LTR ERVL 1 462 -29 252 280 40 40 chr3 31408798 31408898 -196115680 - MIR SINE MIR -148 114 15 2484 66 3 0 chr3 31408898 31409199 -196115379 - AluY SINE Alu -9 302 1 2122 140 0 10 chr3 31410914 31411221 -196113357 + AluJb SINE Alu 1 304 -8 810 137 86 6 chr3 31411322 31411497 -196113081 - MER33 DNA MER1_type 0 363 175 1694 207 55 34 chr3 31411497 31411879 -196112699 + MSTD LTR MaLR 1 390 -6 1094 146 0 38 chr3 31411884 31412069 -196112509 - FRAM SINE Alu -6 170 1 2233 102 0 16 chr3 31412151 31412455 -196112123 - AluSx SINE Alu -13 299 1 514 266 0 0 chr3 31412459 31412568 -196112010 - MER33 DNA MER1_type -215 109 1 397 259 80 0 chr3 31412568 31412680 -196111898 - MIR SINE MIR -54 208 88 483 248 37 70 chr3 31412719 31412747 -196111831 + MIR SINE MIR 53 80 -182 2329 91 10 0 chr3 31412747 31413043 -196111535 - AluSx SINE Alu -13 299 1 483 248 37 70 chr3 31413043 31413228 -196111350 + MIR SINE MIR 80 259 -3 516 158 53 0 chr3 31413511 31413606 -196110972 - MLT1G1 LTR MaLR 0 595 496 215 267 67 27 chr3 31413636 31413711 -196110867 - L2 LINE L2 -24 3289 3212 189 0 0 0 chr3 31413978 31413999 -196110579 + (T)n Simple_repeat Simple_repeat 1 21 0 229 315 0 0 chr3 31414785 31414877 -196109701 + HAL1 LINE L1 826 917 -1590 298 307 22 0 chr3 31414916 31415053 -196109525 + L1MB7 LINE L1 5191 5330 -816 1192 186 5 18 chr3 31415084 31415305 -196109273 + AluJo SINE Alu 89 306 -6 876 286 69 31 chr3 31415306 31415892 -196108686 + L1MB7 LINE L1 5305 5922 -262 492 274 142 46 chr3 31415894 31416325 -196108253 - L2 LINE L2 -1 3312 2841 303 282 84 64 chr3 31416404 31416702 -196107876 - L2 LINE L2 -2571 743 440 1706 158 41 0 chr3 31417173 31417465 -196107113 - AluJb SINE Alu -4 308 5 350 305 8 23 chr3 31417878 31418006 -196106572 + MER5A DNA MER1_type 64 189 0 261 0 0 0 chr3 31418417 31418446 -196106132 + (CA)n Simple_repeat Simple_repeat 1 29 0 466 280 59 27 chr3 31418761 31418947 -196105631 - L2 LINE L2 -42 3271 3080 321 140 0 0 chr3 31419598 31419655 -196104923 + (TTCA)n Simple_repeat Simple_repeat 4 60 0 2254 90 31 0 chr3 31419659 31419947 -196104631 - AluSp SINE Alu -16 297 1 253 226 57 113 chr3 31419947 31420071 -196104507 - L2 LINE L2 -1 3312 3196 249 83 0 0 chr3 31420299 31420335 -196104243 + (T)n Simple_repeat Simple_repeat 1 36 0 1677 179 27 7 chr3 31420356 31420652 -196103926 - AluJb SINE Alu -10 302 1 238 250 0 0 chr3 31420838 31420886 -196103692 + (CA)n Simple_repeat Simple_repeat 1 48 0 2201 101 0 0 chr3 31420904 31421182 -196103396 - AluSg SINE Alu -32 278 1 2161 132 0 0 chr3 31421182 31421485 -196103093 - AluSx SINE Alu -8 304 1 885 178 46 0 chr3 31421583 31421735 -196102843 - FRAM SINE Alu -22 154 1 1823 160 3 17 chr3 31421752 31422046 -196102532 + AluJb SINE Alu 1 290 -22 339 188 138 0 chr3 31422252 31422332 -196102246 - MER5A DNA MER1_type -84 105 15 544 315 55 14 chr3 31422348 31422567 -196102011 + MIR SINE MIR 35 262 0 2365 87 10 13 chr3 31423679 31423990 -196100588 - AluSp SINE Alu -3 310 1 281 190 52 16 chr3 31424140 31424257 -196100321 - MIR SINE MIR -64 144 71 261 83 0 0 chr3 31424446 31424482 -196100096 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 604 249 116 3 chr3 31424891 31425076 -196099502 + MIR SINE MIR 26 217 -45 2108 118 3 0 chr3 31425716 31426003 -196098575 + AluSx SINE Alu 1 288 -24 44 0 0 0 chr3 31426003 31426047 -196098531 + AT_rich Low_complexity Low_complexity 1 44 0 907 232 13 9 chr3 31426639 31426872 -196097706 + MIR SINE MIR 26 259 -3 288 271 49 65 chr3 31427092 31427271 -196097307 + L1MC4 LINE L1 7325 7511 -297 253 261 73 98 chr3 31427275 31427468 -196097110 + L1MC5 LINE L1 7354 7535 -426 1779 172 0 0 chr3 31427468 31427741 -196096837 + AluJo SINE Alu 1 273 -39 253 261 73 98 chr3 31427741 31427903 -196096675 + L1MC5 LINE L1 7535 7700 -261 2254 102 3 0 chr3 31427932 31428225 -196096353 - AluSx SINE Alu -18 294 1 2332 59 0 26 chr3 31430111 31430414 -196094164 - AluY SINE Alu -16 295 1 589 314 74 0 chr3 31430414 31430643 -196093935 - MIR SINE MIR -3 259 14 2341 102 0 0 chr3 31430938 31431241 -196093337 - AluSg SINE Alu -7 303 1 270 0 0 0 chr3 31431280 31431310 -196093268 + (TG)n Simple_repeat Simple_repeat 2 31 0 376 355 14 0 chr3 31431522 31431663 -196092915 + MIR3 SINE MIR 59 201 -7 243 253 205 0 chr3 31431906 31431989 -196092589 - L2 LINE L2 -20 3293 3194 1122 236 190 25 chr3 31432514 31432950 -196091628 - L1MC4 LINE L1 0 8042 7535 39 68 0 0 chr3 31432953 31433027 -196091551 + AT_rich Low_complexity Low_complexity 1 74 0 1001 165 0 29 chr3 31433205 31433375 -196091203 + FRAM SINE Alu 6 170 -6 194 283 19 19 chr3 31433395 31433448 -196091130 + L2 LINE L2 3210 3262 -10 2365 93 10 0 chr3 31434416 31434717 -196089861 - AluSx SINE Alu -7 305 2 1929 160 7 3 chr3 31435503 31435809 -196088769 - AluJb SINE Alu -5 307 1 425 266 0 119 chr3 31435901 31435962 -196088616 + MIR3 SINE MIR 50 117 -91 2318 95 0 19 chr3 31435962 31436277 -196088301 - AluSc SINE Alu 0 309 1 425 266 0 119 chr3 31436277 31436392 -196088186 + MIR3 SINE MIR 117 205 -3 221 284 27 14 chr3 31436644 31436718 -196087860 - MIR SINE MIR -123 139 65 21 0 0 0 chr3 31438138 31438159 -196086419 + AT_rich Low_complexity Low_complexity 1 21 0 233 132 0 19 chr3 31438986 31439039 -196085539 + (GGA)n Simple_repeat Simple_repeat 1 52 0 56 105 0 0 chr3 31439226 31439436 -196085142 + GC_rich Low_complexity Low_complexity 1 210 0 23 54 0 0 chr3 31439741 31439778 -196084800 + GC_rich Low_complexity Low_complexity 1 37 0 222 289 50 25 chr3 31439789 31439910 -196084668 + C-rich Low_complexity Low_complexity 5 128 0 24 32 0 0 chr3 31440022 31440053 -196084525 + GC_rich Low_complexity Low_complexity 1 31 0 338 255 130 104 chr3 31443658 31444167 -196080411 - L1M2 LINE L1 -5495 1354 833 234 0 0 0 chr3 31446648 31446674 -196077904 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2084 95 21 21 chr3 31446676 31446961 -196077617 - AluSg SINE Alu -25 285 1 441 27 0 13 chr3 31447209 31447285 -196077293 + AluY SINE Alu 123 292 -20 1645 174 33 7 chr3 31448103 31448402 -196076176 - AluJb SINE Alu -5 307 1 3135 161 29 25 chr3 31449262 31449545 -196075033 + L1MB4 LINE L1 5587 5868 -312 2306 79 0 3 chr3 31449545 31449836 -196074742 + AluY SINE Alu 1 290 -21 3135 161 29 25 chr3 31449836 31450141 -196074437 + L1MB4 LINE L1 5868 6177 -3 2174 89 72 0 chr3 31450281 31450572 -196074006 + AluSx SINE Alu 1 312 0 226 245 20 0 chr3 31451375 31451424 -196073154 + L2 LINE L2 3209 3258 -14 310 282 90 19 chr3 31451594 31451750 -196072828 - L1MC4 LINE L1 -2 8040 7874 2151 89 0 7 chr3 31452125 31452433 -196072145 + AluSc SINE Alu 3 308 0 273 311 194 0 chr3 31452650 31452753 -196071825 + L2 LINE L2 3141 3263 -9 396 324 176 23 chr3 31454177 31454523 -196070055 - L2 LINE L2 -6 3307 2909 834 281 134 75 chr3 31454566 31455350 -196069228 - L2 LINE L2 -598 2716 1887 2022 116 0 0 chr3 31455985 31456261 -196068317 - AluSg SINE Alu -30 280 5 641 253 296 18 chr3 31458513 31458905 -196065673 - L2 LINE L2 -2 3311 2811 844 216 19 12 chr3 31459017 31459179 -196065399 + FAM SINE Alu 3 165 -10 21 57 0 0 chr3 31460290 31460325 -196064253 + AT_rich Low_complexity Low_complexity 1 35 0 521 271 85 28 chr3 31460560 31460737 -196063841 - MIR SINE MIR -74 188 2 21 36 0 0 chr3 31461245 31461273 -196063305 + AT_rich Low_complexity Low_complexity 1 28 0 1832 155 7 4 chr3 31462300 31462578 -196062000 - AluJo SINE Alu -31 281 3 656 224 0 28 chr3 31462579 31462722 -196061856 - AluJo SINE Alu -170 142 4 197 0 71 0 chr3 31463538 31463566 -196061012 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 185 196 0 0 chr3 31463679 31463725 -196060853 + L3 LINE CR1 912 957 -620 503 268 147 18 chr3 31463951 31464175 -196060403 - MIR SINE MIR -2 260 8 21 57 0 0 chr3 31464249 31464284 -196060294 + AT_rich Low_complexity Low_complexity 1 35 0 1118 150 0 12 chr3 31464639 31464806 -196059772 - AluJb SINE Alu -14 298 134 2027 132 3 31 chr3 31464807 31465126 -196059452 - AluSx SINE Alu -2 310 1 186 254 48 48 chr3 31465232 31465295 -196059283 + L2 LINE L2 3209 3271 -1 1901 81 0 0 chr3 31465483 31465718 -196058860 + AluSq SINE Alu 1 235 -78 244 158 0 0 chr3 31465718 31465756 -196058822 + Alu SINE Alu 189 226 -73 808 107 18 0 chr3 31465756 31465868 -196058710 + AluSg/x SINE Alu 179 292 -17 1761 158 7 33 chr3 31465873 31466177 -196058401 + AluJb SINE Alu 5 300 -12 22 0 0 0 chr3 31466341 31466363 -196058215 + AT_rich Low_complexity Low_complexity 1 22 0 1642 175 67 3 chr3 31466835 31467120 -196057458 + AluJb SINE Alu 1 303 -9 24 32 0 0 chr3 31467173 31467204 -196057374 + AT_rich Low_complexity Low_complexity 1 31 0 387 331 31 0 chr3 31467313 31467443 -196057135 + MIR SINE MIR 19 152 -110 951 223 0 0 chr3 31467703 31467869 -196056709 + FRAM SINE Alu 1 166 0 24 32 0 0 chr3 31467948 31467979 -196056599 + AT_rich Low_complexity Low_complexity 1 31 0 232 268 163 26 chr3 31468251 31468308 -196056270 + MER5B DNA MER1_type 2 50 -128 1803 173 13 0 chr3 31468308 31468609 -196055969 + AluJo SINE Alu 1 305 -7 232 268 163 26 chr3 31468609 31468704 -196055874 + MER5B DNA MER1_type 50 175 -3 236 325 123 0 chr3 31469472 31469586 -196054992 - L2 LINE L2 0 3272 3145 624 289 42 12 chr3 31469709 31469875 -196054703 - MIR3 SINE MIR -21 187 17 870 204 102 0 chr3 31470092 31470308 -196054270 + MIR SINE MIR 4 241 -21 472 242 8 25 chr3 31470327 31470447 -196054131 - MIR SINE MIR -105 157 40 1938 167 7 3 chr3 31471179 31471485 -196053093 - AluJb SINE Alu -3 309 3 2473 233 73 39 chr3 31471491 31471609 -196052969 - L1MEc LINE L1 -4046 2350 2237 1946 138 0 16 chr3 31471609 31471920 -196052658 - AluSx SINE Alu -6 306 1 2473 233 73 39 chr3 31471920 31472302 -196052276 - L1MEc LINE L1 -4159 2237 1869 2206 103 0 3 chr3 31472302 31472618 -196051960 + AluY SINE Alu 1 315 0 2473 233 73 39 chr3 31472618 31473116 -196051462 - L1MEc LINE L1 -4527 1869 1316 2642 221 67 42 chr3 31473121 31473940 -196050638 - L1MEc LINE L1 -5226 1170 331 672 246 17 6 chr3 31473965 31474140 -196050438 - L1MEc LINE L1 -6183 213 37 459 0 0 0 chr3 31475319 31475370 -196049208 + (TG)n Simple_repeat Simple_repeat 1 51 0 1044 195 5 5 chr3 31475387 31475582 -196048996 - AluJb SINE Alu -32 280 86 259 299 52 0 chr3 31476375 31476452 -196048126 + L2 LINE L2 3223 3303 -10 287 263 187 56 chr3 31477480 31477843 -196046735 - L1ME LINE L1 -288 5878 5459 232 179 0 0 chr3 31477954 31477993 -196046585 - L1ME LINE L1 -1369 4777 4739 * 308 316 111 54 chr3 31477989 31478305 -196046273 + L1 LINE L1 4782 5115 -1031 261 0 0 0 chr3 31478682 31478711 -196045867 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 327 49 0 0 chr3 31478710 31478751 -196045827 + (TG)n Simple_repeat Simple_repeat 2 42 0 1426 223 17 59 chr3 31478793 31479147 -196045431 - MER58B DNA MER1_type -2 339 1 727 178 0 16 chr3 31479402 31479532 -196045046 + FLAM_A SINE Alu 1 122 -11 2243 115 3 0 chr3 31479535 31479839 -196044739 + AluSx SINE Alu 1 305 -7 421 230 0 0 chr3 31480271 31480345 -196044233 + MER94 DNA DNA 61 134 0 2552 72 0 3 chr3 31480609 31480915 -196043663 - AluY SINE Alu -6 305 1 305 169 36 72 chr3 31481106 31481189 -196043389 - L1MC4a LINE L1 -1873 5935 5856 220 191 167 36 chr3 31481201 31481285 -196043293 - MIR SINE MIR -79 183 89 2130 148 0 3 chr3 31481307 31481617 -196042961 + AluSx SINE Alu 1 309 -3 1792 149 88 145 chr3 31481999 31482462 -196042116 - L1MB7 LINE L1 -279 5905 5490 4731 74 2 0 chr3 31482462 31483070 -196041508 - L1PA8 LINE L1 -2 6170 5562 1792 149 88 145 chr3 31483070 31483277 -196041301 - L1MB7 LINE L1 -694 5490 5273 854 130 0 0 chr3 31483306 31483421 -196041157 - AluJb SINE Alu -197 115 1 823 222 19 5 chr3 31483423 31483630 -196040948 - L1MB7 LINE L1 -863 5283 5074 820 168 84 0 chr3 31483648 31483791 -196040787 - FRAM SINE Alu -21 155 1 1556 171 33 40 chr3 31483802 31484106 -196040472 - AluJo SINE Alu -10 302 1 3299 203 27 90 chr3 31484109 31484639 -196039939 - L1MB7 LINE L1 -1091 5055 4493 1601 169 48 14 chr3 31484639 31484929 -196039649 + AluJo SINE Alu 1 300 -12 3299 203 27 90 chr3 31484929 31484945 -196039633 - L1MB7 LINE L1 -1653 4493 4478 2556 166 19 2 chr3 31484945 31485361 -196039217 + MSTB LTR MaLR 4 426 0 3299 203 27 90 chr3 31485361 31485707 -196038871 - L1MB7 LINE L1 -1668 4478 4112 1967 135 3 35 chr3 31485707 31486025 -196038553 - AluJb SINE Alu -4 308 1 2097 95 84 0 chr3 31486028 31486313 -196038265 - AluSp SINE Alu -4 309 1 3299 203 27 90 chr3 31486313 31486525 -196038053 - L1MB7 LINE L1 -2036 4110 4015 694 183 39 28 chr3 31486530 31486710 -196037868 - L1M4 LINE L1 -961 5185 5004 389 250 59 99 chr3 31487012 31487096 -196037482 + MLT1K LTR MaLR 102 179 -409 2026 128 49 0 chr3 31487096 31487384 -196037194 + AluSx SINE Alu 1 302 -10 389 250 59 99 chr3 31487384 31487451 -196037127 + MLT1K LTR MaLR 179 247 -341 479 294 104 5 chr3 31487535 31487736 -196036842 + MLT1K LTR MaLR 366 586 -2 2693 48 0 3 chr3 31488668 31488979 -196035599 + AluY SINE Alu 1 310 -1 2204 94 17 10 chr3 31489147 31489435 -196035143 - AluSg SINE Alu -7 303 14 760 216 7 0 chr3 31490001 31490149 -196034429 + FRAM SINE Alu 25 173 -3 1071 145 140 0 chr3 31490968 31491161 -196033417 - AluSg/x SINE Alu -10 299 80 2349 104 0 0 chr3 31491441 31491740 -196032838 - AluSx SINE Alu -13 299 1 368 263 0 10 chr3 31492716 31492815 -196031763 + MIR SINE MIR 51 148 -114 4342 121 57 57 chr3 31494524 31495309 -196029269 + LTR1 LTR ERV1 1 785 0 1634 182 0 0 chr3 31495844 31496108 -196028470 - AluJo SINE Alu -10 302 39 2084 256 175 47 chr3 31496112 31496644 -196027934 - HAL1 LINE L1 0 2507 2045 2431 88 3 0 chr3 31496644 31496950 -196027628 - AluSp SINE Alu -6 307 1 2084 256 175 47 chr3 31496950 31497895 -196026683 - HAL1 LINE L1 -462 2045 840 745 242 172 0 chr3 31497899 31498114 -196026464 - HAL1 LINE L1 -1811 696 445 1574 179 58 46 chr3 31498126 31498455 -196026123 - MLT1E1 LTR MaLR -9 645 313 1516 167 4 19 chr3 31498481 31498744 -196025834 - AluJb SINE Alu -23 289 31 278 295 0 0 chr3 31500189 31500294 -196024284 + T-rich Low_complexity Low_complexity 1 105 0 260 203 78 0 chr3 31500555 31500619 -196023959 - L1ME1 LINE L1 -5 6161 6093 235 152 30 106 chr3 31501520 31501586 -196022992 - MLT1G LTR MaLR -190 400 340 418 204 45 11 chr3 31501833 31501921 -196022657 - MLT1F1 LTR MaLR -476 91 1 198 0 0 0 chr3 31502167 31502189 -196022389 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 7051 53 5 54 chr3 31502189 31503894 -196020684 - SVA Other Other -683 1363 18 1784 210 51 17 chr3 31504006 31504229 -196020349 - Charlie1b DNA MER1_type -2238 523 309 2422 78 0 3 chr3 31504229 31504522 -196020056 + AluSc SINE Alu 1 292 -17 1784 210 51 17 chr3 31504522 31504765 -196019813 - Charlie1b DNA MER1_type -2452 309 41 2464 61 0 3 chr3 31504957 31505250 -196019328 + AluSg SINE Alu 1 292 -18 258 208 94 0 chr3 31505318 31505371 -196019207 + MER94 DNA DNA 1 58 -76 2299 80 0 3 chr3 31507275 31507563 -196017015 - AluSc SINE Alu -22 287 1 181 0 0 65 chr3 31508114 31508145 -196016433 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 1507 173 85 0 chr3 31508266 31508526 -196016052 + AluJo SINE Alu 12 293 -19 434 207 269 28 chr3 31508567 31508712 -196015866 - MER5A DNA MER1_type -6 183 4 231 310 42 0 chr3 31508822 31508893 -196015685 + MIR SINE MIR 28 101 -161 1109 154 32 41 chr3 31508903 31509124 -196015454 - MER20 DNA MER1_type 0 219 1 3314 116 7 37 chr3 31509930 31510473 -196014105 + MER1A DNA MER1_type 1 527 0 1537 151 9 107 chr3 31511457 31511594 -196012984 + AluJb SINE Alu 1 91 -211 2376 87 0 0 chr3 31511594 31511882 -196012696 + AluSq SINE Alu 1 288 -25 1537 151 9 107 chr3 31511882 31512063 -196012515 + AluJb SINE Alu 91 288 -14 4586 114 96 31 chr3 31513193 31513965 -196010613 - LTR12 LTR ERV1 0 826 5 2455 194 25 26 chr3 31513980 31514583 -196009995 - pTR5 LTR ERV1 -1093 1345 744 1792 163 3 17 chr3 31515129 31515423 -196009155 + AluJb SINE Alu 1 290 -22 339 188 138 0 chr3 31515629 31515709 -196008869 - MER5A DNA MER1_type -84 105 15 544 315 55 14 chr3 31515725 31515944 -196008634 + MIR SINE MIR 35 262 0 2275 100 10 13 chr3 31517056 31517367 -196007211 - AluSp SINE Alu -3 310 1 281 190 52 16 chr3 31517517 31517634 -196006944 - MIR SINE MIR -64 144 71 261 83 0 0 chr3 31517823 31517859 -196006719 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 604 249 116 3 chr3 31518268 31518453 -196006125 + MIR SINE MIR 26 217 -45 2108 118 3 0 chr3 31519093 31519380 -196005198 + AluSx SINE Alu 1 288 -24 44 0 0 0 chr3 31519380 31519424 -196005154 + AT_rich Low_complexity Low_complexity 1 44 0 907 232 13 9 chr3 31520016 31520249 -196004329 + MIR SINE MIR 26 259 -3 288 271 49 65 chr3 31520469 31520648 -196003930 + L1MC4 LINE L1 7325 7511 -297 253 261 73 98 chr3 31520652 31520845 -196003733 + L1MC5 LINE L1 7354 7535 -426 1779 172 0 0 chr3 31520845 31521118 -196003460 + AluJo SINE Alu 1 273 -39 253 261 73 98 chr3 31521118 31521280 -196003298 + L1MC5 LINE L1 7535 7700 -261 2101 103 3 3 chr3 31521309 31521591 -196002987 - AluSx SINE Alu -18 294 13 884 149 32 0 chr3 31521731 31521885 -196002693 + AluSc SINE Alu 150 308 -1 2181 107 0 17 chr3 31522194 31522494 -196002084 - AluSx SINE Alu -17 295 1 736 178 0 30 chr3 31522611 31522738 -196001840 - Charlie1 DNA MER1_type 0 2761 2637 623 152 96 40 chr3 31522738 31522863 -196001715 + AluJo SINE Alu 1 132 -170 2360 59 0 26 chr3 31524502 31524805 -195999773 - AluY SINE Alu -16 295 1 526 325 23 0 chr3 31524805 31525027 -195999551 - MIR SINE MIR -3 259 34 2360 102 0 0 chr3 31525329 31525632 -195998946 - AluSg SINE Alu -7 303 1 270 0 0 0 chr3 31525671 31525701 -195998877 + (TG)n Simple_repeat Simple_repeat 2 31 0 340 355 14 0 chr3 31525913 31526054 -195998524 + MIR3 SINE MIR 59 201 -7 215 253 205 0 chr3 31526297 31526380 -195998198 - L2 LINE L2 -20 3293 3194 1086 236 190 25 chr3 31526906 31527342 -195997236 - L1MC4 LINE L1 0 8042 7535 39 68 0 0 chr3 31527345 31527419 -195997159 + AT_rich Low_complexity Low_complexity 1 74 0 1009 165 0 29 chr3 31527597 31527767 -195996811 + AluJo SINE Alu 142 306 -6 2382 93 10 0 chr3 31528808 31529109 -195995469 - AluSx SINE Alu -7 305 2 1679 161 3 37 chr3 31529895 31530194 -195994384 - AluJb SINE Alu -5 307 19 2298 101 0 25 chr3 31530368 31530685 -195993893 - AluSx SINE Alu -3 309 1 1000 183 0 0 chr3 31530691 31530866 -195993712 - FRAM SINE Alu 0 176 2 417 264 182 0 chr3 31531085 31531233 -195993345 - MER5A DNA MER1_type -8 181 7 313 148 0 0 chr3 31531770 31531824 -195992754 - L1MC4 LINE L1 0 8042 7989 3298 162 43 14 chr3 31531827 31532352 -195992226 + L1MB5 LINE L1 5550 6095 -79 2078 114 24 0 chr3 31532352 31532650 -195991928 - AluY SINE Alu -6 305 1 3298 162 43 14 chr3 31532650 31532699 -195991879 + L1MB5 LINE L1 6095 6141 -33 1004 181 5 42 chr3 31532704 31532897 -195991681 + AluJo SINE Alu 5 190 -122 904 166 0 0 chr3 31533031 31533182 -195991396 + FRAM SINE Alu 20 170 -6 1087 84 0 52 chr3 31533194 31533349 -195991229 + AluSq/x SINE Alu 1 147 -166 318 302 151 0 chr3 31533353 31533479 -195991099 - MIR SINE MIR -70 192 48 351 0 0 0 chr3 31534183 31534222 -195990356 + (TAA)n Simple_repeat Simple_repeat 2 40 0 21 0 0 0 chr3 31534222 31534243 -195990335 + AT_rich Low_complexity Low_complexity 1 21 0 2216 82 0 4 chr3 31534243 31534524 -195990054 - AluSx SINE Alu -32 280 1 2428 101 0 0 chr3 31534925 31535232 -195989346 + AluSq SINE Alu 1 307 -6 383 349 32 24 chr3 31535233 31535482 -195989096 - MIR SINE MIR -2 260 10 203 274 104 96 chr3 31536620 31536755 -195987823 - MIR3 SINE MIR -60 148 13 351 310 21 35 chr3 31536944 31537089 -195987489 + MER91A DNA MER1_type 1 143 -53 278 250 90 20 chr3 31537099 31537199 -195987379 + MER91A DNA MER1_type 86 192 -4 413 267 78 30 chr3 31537204 31537448 -195987130 + MLT1K LTR MaLR 30 320 -268 300 235 106 12 chr3 31537529 31537614 -195986964 + MLT1K LTR MaLR 496 588 0 228 135 0 0 chr3 31538053 31538090 -195986488 + (A)n Simple_repeat Simple_repeat 1 37 0 213 39 0 0 chr3 31538133 31538159 -195986419 + (TC)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr3 31538676 31538698 -195985880 + AT_rich Low_complexity Low_complexity 1 22 0 2370 93 3 0 chr3 31538831 31539141 -195985437 + AluY SINE Alu 1 311 0 843 211 53 35 chr3 31539184 31539417 -195985161 - MLT1D LTR MaLR -239 228 5 1866 132 3 33 chr3 31540082 31540385 -195984193 - AluSx SINE Alu -18 294 1 2051 238 170 28 chr3 31540607 31540958 -195983620 + L2 LINE L2 413 713 -2601 1235 158 143 33 chr3 31540958 31541230 -195983348 - AluJo SINE Alu 0 302 1 2051 238 170 28 chr3 31541230 31541772 -195982806 + L2 LINE L2 713 1177 -2137 2394 86 3 3 chr3 31541772 31542075 -195982503 + AluY SINE Alu 1 303 -8 2051 238 170 28 chr3 31542075 31542238 -195982340 + L2 LINE L2 1177 1686 -1628 2133 108 14 0 chr3 31542251 31542537 -195982041 + AluSx SINE Alu 1 290 -22 260 214 79 126 chr3 31542542 31542614 -195981964 + L1MC4a LINE L1 5776 5850 -1958 729 169 8 15 chr3 31542614 31542744 -195981834 + FLAM_C SINE Alu 5 133 0 260 214 79 126 chr3 31542744 31542840 -195981738 + L1MC4a LINE L1 5850 5934 -1874 1566 175 36 26 chr3 31542840 31543148 -195981430 + AluJo SINE Alu 1 311 -1 260 214 79 126 chr3 31543148 31543193 -195981385 + L1MC4a LINE L1 5934 5980 -1828 789 260 275 14 chr3 31543393 31543865 -195980713 + L2 LINE L2 2704 3309 -4 290 245 49 10 chr3 31543881 31543983 -195980595 - MIR SINE MIR -86 176 71 1672 221 22 48 chr3 31544187 31544361 -195980217 + L1MD1 LINE L1 5735 5912 -330 2328 96 0 10 chr3 31544361 31544662 -195979916 - AluSg SINE Alu -12 298 1 1672 221 22 48 chr3 31544662 31544681 -195979897 + L1MD1 LINE L1 5912 5930 -312 2101 147 18 6 chr3 31544681 31545014 -195979564 + MER1B DNA MER1_type 1 337 0 1672 221 22 48 chr3 31545014 31545176 -195979402 + L1MD1 LINE L1 5930 6082 -160 253 175 0 38 chr3 31545230 31545310 -195979268 + T-rich Low_complexity Low_complexity 5 81 0 366 158 11 33 chr3 31545322 31545505 -195979073 + T-rich Low_complexity Low_complexity 2 180 0 363 218 13 26 chr3 31545548 31545704 -195978874 + T-rich Low_complexity Low_complexity 3 156 0 186 79 53 0 chr3 31545710 31545748 -195978830 + (TTGG)n Simple_repeat Simple_repeat 1 40 0 769 184 125 0 chr3 31545889 31546057 -195978521 - L1MC4 LINE L1 -556 7486 7298 1719 65 0 30 chr3 31546066 31546297 -195978281 + AluY SINE Alu 88 311 0 1607 181 0 38 chr3 31546550 31546842 -195977736 + AluJo SINE Alu 1 281 -31 1943 116 14 130 chr3 31547037 31547067 -195977511 + MER47A DNA MER2_type 1 33 -2290 1814 186 10 0 chr3 31547067 31547362 -195977216 - AluJb SINE Alu -14 298 1 1943 116 14 130 chr3 31547362 31547485 -195977093 + MER47A DNA MER2_type 33 169 -2154 2292 102 0 20 chr3 31547485 31547789 -195976789 + AluSx SINE Alu 1 298 -14 1943 116 14 130 chr3 31547789 31547827 -195976751 + MER47A DNA MER2_type 169 210 -2113 1757 170 31 7 chr3 31547827 31548116 -195976462 + AluJo SINE Alu 1 296 -16 1943 116 14 130 chr3 31548116 31548336 -195976242 + MER47A DNA MER2_type 210 366 0 219 259 19 0 chr3 31549304 31549358 -195975220 + CT-rich Low_complexity Low_complexity 2 56 0 651 121 0 0 chr3 31549485 31549576 -195975002 - AluJ/FLAM SINE Alu -217 95 5 457 170 179 0 chr3 31549665 31549771 -195974807 - L1ME4a LINE L1 -33 6088 5964 275 302 60 9 chr3 31550180 31550296 -195974282 + L2 LINE L2 2659 2780 -534 1137 201 48 98 chr3 31550368 31550543 -195974035 - MER20B DNA MER1_type -21 762 580 1451 178 91 18 chr3 31550543 31550819 -195973759 - AluJb SINE Alu -16 296 1 1137 201 48 98 chr3 31550819 31551060 -195973518 - MER20B DNA MER1_type -203 580 367 596 297 58 49 chr3 31551086 31551497 -195973081 + L2 LINE L2 2824 3238 -75 264 100 0 0 chr3 31551550 31551590 -195972988 + (GA)n Simple_repeat Simple_repeat 1 40 0 2314 71 3 0 chr3 31552265 31552547 -195972031 + AluSp SINE Alu 21 303 -10 691 151 131 75 chr3 31552728 31552927 -195971651 + MLT1D LTR MaLR 1 210 -295 543 130 32 20 chr3 31552928 31553051 -195971527 + MLT1E2 LTR MaLR 372 626 0 1660 169 3 27 chr3 31553254 31553550 -195971028 - AluJo SINE Alu -13 299 11 2400 93 3 0 chr3 31553586 31553896 -195970682 - AluSp SINE Alu -2 311 1 1735 204 20 17 chr3 31554135 31554492 -195970086 + MLT1A1 LTR MaLR 8 365 0 349 326 30 0 chr3 31554935 31555070 -195969508 + MER5B DNA MER1_type 3 141 -37 1477 129 57 12 chr3 31555551 31555799 -195968779 - AluSg SINE Alu -11 299 41 185 153 0 51 chr3 31556022 31556081 -195968497 + C-rich Low_complexity Low_complexity 1 56 0 215 296 74 12 chr3 31556888 31556969 -195967609 + L2 LINE L2 3183 3268 -4 549 146 194 0 chr3 31558197 31558300 -195966278 + FLAM_A SINE Alu 1 123 -10 1147 72 0 26 chr3 31559468 31559621 -195964957 + AluY SINE Alu 163 311 0 773 163 0 37 chr3 31560487 31560622 -195963956 + AluJb SINE Alu 158 287 -25 216 97 0 0 chr3 31560622 31560653 -195963925 + (TA)n Simple_repeat Simple_repeat 2 32 0 2079 107 34 7 chr3 31564475 31564773 -195959805 + AluSx SINE Alu 1 306 -6 226 312 54 50 chr3 31565434 31565655 -195958923 + L2 LINE L2 157 378 -2936 367 300 34 68 chr3 31565820 31566082 -195958496 - L2 LINE L2 -314 2999 2751 2165 117 3 0 chr3 31566168 31566468 -195958110 + AluY SINE Alu 1 301 -10 2060 123 0 43 chr3 31566639 31566965 -195957613 + AluSx SINE Alu 1 312 0 1768 155 16 35 chr3 31567453 31567769 -195956809 - AluJb SINE Alu -1 311 2 2311 109 0 3 chr3 31568077 31568390 -195956188 + AluSx SINE Alu 1 312 0 2500 229 158 65 chr3 31568983 31569405 -195955173 + HAL1 LINE L1 372 753 -1754 1902 169 0 3 chr3 31569405 31569701 -195954877 - AluJb SINE Alu -17 295 1 2500 229 158 65 chr3 31569701 31570169 -195954409 + HAL1 LINE L1 753 1176 -1331 1948 123 0 0 chr3 31570169 31570429 -195954149 + AluSx SINE Alu 1 260 -52 2500 229 158 65 chr3 31570429 31570498 -195954080 + HAL1 LINE L1 1176 1237 -1270 1401 151 19 158 chr3 31570498 31570922 -195953656 - MLT1A1 LTR MaLR 0 365 1 2500 229 158 65 chr3 31570922 31571030 -195953548 + HAL1 LINE L1 1237 1541 -966 749 240 87 49 chr3 31571036 31571279 -195953299 + L1ME3A LINE L1 5594 5851 -319 830 140 0 22 chr3 31571279 31571415 -195953163 - FLAM_C SINE Alu 0 133 1 749 240 87 49 chr3 31571415 31571459 -195953119 + L1ME3A LINE L1 5851 5892 -278 827 270 72 36 chr3 31571694 31572001 -195952577 + HAL1 LINE L1 1542 1859 -648 309 180 6 155 chr3 31572043 31572163 -195952415 + HAL1 LINE L1 1678 1770 -737 2316 116 0 0 chr3 31572163 31572465 -195952113 + AluSx SINE Alu 1 302 -10 309 180 6 155 chr3 31572465 31572505 -195952073 + HAL1 LINE L1 1770 1814 -693 1184 152 20 15 chr3 31572736 31572940 -195951638 + Tigger2a DNA MER2_type 5 209 -225 482 200 0 0 chr3 31572948 31573033 -195951545 + AluSg/x SINE Alu 181 265 -44 225 0 0 0 chr3 31573176 31573201 -195951377 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2143 109 0 0 chr3 31573205 31573480 -195951098 - AluSx SINE Alu -37 275 1 1300 137 46 33 chr3 31573480 31573721 -195950857 + Tigger2a DNA MER2_type 201 444 0 1895 225 42 22 chr3 31573739 31574193 -195950385 + Charlie1a DNA MER1_type 1 463 -992 2135 130 3 0 chr3 31575164 31575472 -195949106 - AluSg SINE Alu -1 309 1 378 268 100 42 chr3 31575688 31576133 -195948445 - L1MC4a LINE L1 -304 5817 5317 207 0 0 0 chr3 31576217 31576240 -195948338 + (T)n Simple_repeat Simple_repeat 1 23 0 225 0 0 0 chr3 31576284 31576309 -195948269 + (TG)n Simple_repeat Simple_repeat 2 26 0 852 150 0 15 chr3 31576473 31576606 -195947972 + FLAM_C SINE Alu 3 133 0 300 300 0 0 chr3 31576830 31576880 -195947698 + G-rich Low_complexity Low_complexity 1 50 0 1450 94 0 0 chr3 31576882 31577062 -195947516 + (G)n Simple_repeat Simple_repeat 1 180 0 1203 158 0 0 chr3 31577062 31577227 -195947351 + G-rich Low_complexity Low_complexity 1 165 0 2149 126 0 0 chr3 31578284 31578586 -195945992 + AluSx SINE Alu 1 302 -10 2147 120 0 7 chr3 31578878 31579177 -195945401 - AluSx SINE Alu -15 297 1 4439 48 2 0 chr3 31579249 31579950 -195944628 + L1P2 LINE L1 5084 5787 -367 736 57 9 3 chr3 31579951 31580178 -195944400 + AluY SINE Alu 2 305 -6 216 0 0 0 chr3 31580898 31580922 -195943656 + (A)n Simple_repeat Simple_repeat 1 24 0 342 296 96 16 chr3 31582461 31582586 -195941992 - L2 LINE L2 -1 3271 3137 275 242 116 21 chr3 31582729 31582824 -195941754 - MER66B LTR ERV1 -140 346 243 1743 232 59 32 chr3 31582891 31583366 -195941212 + MLT1D LTR MaLR 18 505 0 770 263 225 15 chr3 31583369 31583941 -195940637 + L2 LINE L2 2626 3313 0 285 331 24 0 chr3 31586733 31586860 -195937718 + G-rich Low_complexity Low_complexity 2 131 0 334 132 0 0 chr3 31587139 31587192 -195937386 + MER58 DNA MER1_type 128 2385 -35 533 131 215 0 chr3 31589372 31589479 -195935099 + FLAM_C SINE Alu 2 131 -2 317 239 374 18 chr3 31589552 31589774 -195934804 + L2 LINE L2 2639 2939 -375 2064 128 7 0 chr3 31589907 31590211 -195934367 - AluSx SINE Alu -6 306 1 811 131 39 0 chr3 31590212 31590342 -195934236 - AluJo SINE Alu -177 135 1 309 174 41 8 chr3 31590370 31590592 -195933986 + AluJb SINE Alu 1 293 -9 356 227 164 18 chr3 31590602 31590712 -195933866 - MIR SINE MIR -87 175 50 2053 91 40 0 chr3 31590725 31591022 -195933556 - AluSx SINE Alu -3 309 1 1898 141 10 0 chr3 31591149 31591440 -195933138 - AluJb SINE Alu -18 294 1 1406 260 105 24 chr3 31591440 31591557 -195933021 - L1MC4a LINE L1 -1850 5958 5852 2075 117 7 0 chr3 31591557 31591855 -195932723 - AluSq SINE Alu -13 300 1 1406 260 105 24 chr3 31591855 31592240 -195932338 - L1MC4a LINE L1 -1956 5852 5415 1725 122 42 14 chr3 31592740 31593026 -195931552 - AluSx SINE Alu -18 294 1 866 240 237 9 chr3 31593163 31593496 -195931082 - MLT1I LTR MaLR 0 409 1 568 138 15 69 chr3 31593609 31593676 -195930902 - MER97c DNA MER1_type? -916 174 115 1665 174 3 3 chr3 31593676 31593986 -195930592 + AluJb SINE Alu 1 310 0 568 138 15 69 chr3 31593986 31594047 -195930531 - MER97c DNA MER1_type? -975 115 52 730 210 153 0 chr3 31594176 31594352 -195930226 - MER3 DNA MER1_type -4 205 3 2073 105 0 3 chr3 31594354 31594676 -195929902 - AluSx SINE Alu 0 321 1 473 193 0 35 chr3 31594701 31594846 -195929732 + CT-rich Low_complexity Low_complexity 2 141 0 801 134 0 8 chr3 31595562 31595681 -195928897 + FLAM_C SINE Alu 1 118 -15 1535 193 0 0 chr3 31596121 31596395 -195928183 + AluJb SINE Alu 1 274 -38 371 21 21 0 chr3 31596419 31596467 -195928111 + (CA)n Simple_repeat Simple_repeat 2 50 0 855 143 64 0 chr3 31596476 31596660 -195927918 + AluSg/x SINE Alu 136 328 0 234 333 11 0 chr3 31596886 31596976 -195927602 - LTR16A1 LTR ERVL -19 438 348 180 0 0 0 chr3 31597014 31597034 -195927544 + (A)n Simple_repeat Simple_repeat 1 20 0 1908 125 3 28 chr3 31597034 31597353 -195927225 + AluSx SINE Alu 1 311 -1 24 32 0 0 chr3 31597354 31597385 -195927193 + AT_rich Low_complexity Low_complexity 1 31 0 291 263 187 56 chr3 31598366 31598729 -195925849 - L1ME LINE L1 -288 5878 5459 195 42 0 0 chr3 31599538 31599562 -195925016 + (TTA)n Simple_repeat Simple_repeat 1 24 0 1632 145 26 35 chr3 31599662 31599973 -195924605 + AluJb SINE Alu 2 309 -3 198 0 0 0 chr3 31600587 31600609 -195923969 + (A)n Simple_repeat Simple_repeat 1 22 0 19749 42 0 2 chr3 31651091 31653647 -195870931 - L1P LINE L1 -2974 3172 623 756 42 0 0 chr3 31653645 31653740 -195870838 - L1P LINE L1 -6048 98 4 * 421 273 191 9 chr3 31655112 31655369 -195869209 + L1MC1 LINE L1 5621 5808 -313 223 267 167 0 chr3 31655874 31655964 -195868614 + MIR3 SINE MIR 103 207 -1 840 238 0 22 chr3 31656803 31656988 -195867590 + MIR SINE MIR 82 262 0 1189 215 74 60 chr3 31657321 31657768 -195866810 - LTR37B LTR ERV1 -10 458 6 296 207 138 0 chr3 31657773 31657860 -195866718 + L2 LINE L2 3134 3232 -40 1390 68 37 0 chr3 31657873 31658063 -195866515 + MER30 DNA MER1_type 1 197 -33 226 270 80 15 chr3 31658243 31658380 -195866198 - L1 LINE L1 -2412 3734 3589 41019 31 21 1 chr3 31658628 31664662 -195859916 - L1PA2 LINE L1 0 6155 1 2222 116 0 7 chr3 31664895 31665197 -195859381 - AluSx SINE Alu -12 300 1 204 111 0 0 chr3 31666012 31666048 -195858530 + (CAT)n Simple_repeat Simple_repeat 3 38 0 1264 150 4 13 chr3 31666264 31666490 -195858088 + L1MC1 LINE L1 6101 6324 -9 278 269 0 15 chr3 31666657 31666724 -195857854 - L2 LINE L2 -711 2603 2538 312 261 41 7 chr3 31666732 31666875 -195857703 - L1MC5 LINE L1 0 8042 7801 3397 135 11 11 chr3 31666897 31667460 -195857118 + L1PA15 LINE L1 5600 6162 -3 21 0 0 0 chr3 31667460 31667481 -195857097 + AT_rich Low_complexity Low_complexity 1 21 0 198 103 0 0 chr3 31667724 31667753 -195856825 + (CA)n Simple_repeat Simple_repeat 1 29 0 315 225 93 99 chr3 31667825 31668007 -195856571 - L1MC5 LINE L1 -579 7382 7202 469 290 61 73 chr3 31668100 31668389 -195856189 - L1ME3A LINE L1 -260 5910 5619 1024 214 27 27 chr3 31668389 31668613 -195855965 - MER58A DNA MER1_type 0 224 1 469 290 61 73 chr3 31668613 31668979 -195855599 - L1ME3A LINE L1 -551 5619 5263 696 288 105 80 chr3 31668994 31669592 -195854986 - L1ME3A LINE L1 -893 5253 4641 386 348 0 7 chr3 31669597 31669732 -195854846 - MIR SINE MIR -118 144 11 274 262 145 46 chr3 31669762 31669941 -195854637 + MIR SINE MIR 5 211 -51 1636 249 51 39 chr3 31669965 31670474 -195854104 + MLT2B1 LTR ERVL 6 520 0 5886 195 43 9 chr3 31670477 31673826 -195850752 + ERVL-B1 LTR ERVL 4 3563 -2201 2204 117 17 0 chr3 31673826 31674125 -195850453 + AluSx SINE Alu 1 304 -8 5886 195 43 9 chr3 31674125 31674176 -195850402 + ERVL-B1 LTR ERVL 3563 3611 -2153 938 189 11 0 chr3 31674176 31674361 -195850217 + MLT1B LTR MaLR 204 390 0 505 221 18 9 chr3 31675105 31675218 -195849360 - LTR16A1 LTR ERVL 0 457 344 230 301 105 0 chr3 31675495 31675628 -195848950 + L1MEc LINE L1 789 935 -5461 1918 127 25 4 chr3 31675635 31675937 -195848641 + AluSx SINE Alu 1 308 0 931 244 58 75 chr3 31676081 31676714 -195847864 - HAL1 LINE L1 -165 2342 1548 1434 106 45 39 chr3 31676855 31677167 -195847411 - L1PBa LINE L1 -4115 2748 2435 764 298 11 0 chr3 31677173 31677455 -195847123 - L1PBa LINE L1 -6573 290 6 408 271 42 54 chr3 31677469 31677635 -195846943 + L2 LINE L2 3146 3309 -4 368 309 0 54 chr3 31677710 31677859 -195846719 + MIR SINE MIR 51 191 -71 495 259 45 68 chr3 31677903 31678123 -195846455 - MIR SINE MIR -2 260 46 216 200 0 0 chr3 31678270 31678315 -195846263 + T-rich Low_complexity Low_complexity 1 45 0 17412 35 3 1 chr3 31678318 31681209 -195843369 - L1PA4 LINE L1 -3 6152 3256 755 250 7 0 chr3 31683323 31683467 -195841111 + Charlie1 DNA MER1_type 1 145 -2616 4857 115 7 12 chr3 31683468 31684209 -195840369 + L1P LINE L1 762 1498 -4648 2083 113 39 0 chr3 31684399 31684683 -195839895 + AluSg1 SINE Alu 1 295 -14 1754 240 66 35 chr3 31685158 31685733 -195838845 - MLT1E LTR MaLR 0 593 1 21 36 0 0 chr3 31686061 31686089 -195838489 + AT_rich Low_complexity Low_complexity 1 28 0 228 216 0 0 chr3 31687817 31687868 -195836710 + (TATATG)n Simple_repeat Simple_repeat 6 56 0 245 152 0 0 chr3 31687870 31687916 -195836662 - LTR66 LTR ERVL -171 439 394 5053 160 40 115 chr3 31688202 31689528 -195835050 - MER52A LTR ERV1 0 1755 461 556 179 0 0 chr3 31689530 31689636 -195834942 + AluSg/x SINE Alu 198 303 -9 397 207 60 10 chr3 31689668 31689780 -195834798 - MER52C LTR ERV1 -1179 100 3 315 252 70 35 chr3 31689833 31689976 -195834602 + MER103 DNA DNA 2 149 -17 342 0 0 0 chr3 31690002 31690040 -195834538 + (T)n Simple_repeat Simple_repeat 1 38 0 1047 130 7 0 chr3 31691106 31691275 -195833303 - AluSg/x SINE Alu 0 309 140 2341 106 0 0 chr3 31691535 31691847 -195832731 + AluSx SINE Alu 1 312 0 894 221 82 4 chr3 31691848 31692111 -195832467 + MSTD LTR MaLR 88 392 -4 1037 163 44 5 chr3 31692113 31692316 -195832262 - L1ME2 LINE L1 -261 5903 5693 389 175 0 38 chr3 31692516 31692767 -195831811 + AluJo SINE Alu 1 302 0 3349 142 77 18 chr3 31692860 31693467 -195831111 + L1MB2 LINE L1 5417 6059 -112 883 167 25 0 chr3 31693468 31693630 -195830948 + L1MA3 LINE L1 6135 6300 -5 633 119 0 79 chr3 31693633 31693713 -195830865 + L1MB2 LINE L1 6051 6119 -52 2443 84 0 0 chr3 31693713 31694012 -195830566 + AluY SINE Alu 1 299 -12 633 119 0 79 chr3 31694012 31694057 -195830521 + L1MB2 LINE L1 6119 6166 -5 369 244 189 30 chr3 31694094 31694295 -195830283 - MLT1L LTR MaLR -180 435 203 1557 159 165 26 chr3 31694401 31694747 -195829831 + MSTA LTR MaLR 1 394 -34 2429 87 0 0 chr3 31694748 31695046 -195829532 - AluSx SINE Alu -14 298 1 566 28 14 0 chr3 31695076 31695148 -195829430 + (TTCC)n Simple_repeat Simple_repeat 2 74 0 1993 157 0 10 chr3 31695159 31695465 -195829113 - AluJb SINE Alu -9 303 1 1965 141 10 0 chr3 31695473 31695778 -195828800 - AluSx SINE Alu -4 308 1 249 128 0 0 chr3 31695778 31695817 -195828761 + MSTA LTR MaLR 388 426 -2 557 223 70 38 chr3 31696049 31696206 -195828372 - MER63A DNA MER1_type 0 210 49 * 735 236 155 42 chr3 31696200 31696535 -195828043 - MER115 DNA AcHobo -265 428 56 764 204 80 6 chr3 31696968 31697144 -195827434 + MER5A DNA MER1_type 1 189 0 2311 115 0 3 chr3 31697165 31697477 -195827101 + AluSx SINE Alu 1 311 -1 2108 85 16 72 chr3 31697479 31697797 -195826781 + AluSq SINE Alu 1 300 -13 1621 142 131 71 chr3 31697812 31698178 -195826400 - MLT1B LTR MaLR -2 388 1 2089 158 24 0 chr3 31699562 31699898 -195824680 - MER7A DNA MER2_type -4 342 1 1492 133 29 82 chr3 31700272 31700551 -195824027 + AluJo SINE Alu 34 297 -15 198 209 0 0 chr3 31700575 31700618 -195823960 - L3 LINE CR1 -6 1571 1529 419 310 103 16 chr3 31700672 31700914 -195823664 - LTR16C LTR ERVL -43 448 186 2168 198 24 53 chr3 31700977 31701487 -195823091 - LTR42 LTR ERVL 0 495 1 1304 251 104 47 chr3 31701679 31702186 -195822392 + MLT1H1 LTR MaLR 20 555 0 390 198 90 18 chr3 31704182 31704293 -195820285 - L1MC5 LINE L1 -573 7388 7270 1060 246 176 37 chr3 31704311 31704742 -195819836 - MLT1H LTR MaLR -58 491 1 2022 124 7 10 chr3 31704841 31705147 -195819431 + AluSx SINE Alu 1 305 -7 248 0 0 30 chr3 31705157 31705190 -195819388 + (CAAAAA)n Simple_repeat Simple_repeat 4 35 0 189 305 61 0 chr3 31705325 31705407 -195819171 + MIR SINE MIR 174 260 -2 2163 135 0 0 chr3 31705473 31705785 -195818793 - AluSx SINE Alu 0 312 1 2640 40 0 3 chr3 31706000 31706301 -195818277 - AluY SINE Alu -11 300 1 826 245 22 0 chr3 31707568 31707752 -195816826 - MER5A DNA MER1_type -1 188 1 443 299 65 33 chr3 31707890 31708104 -195816474 - MIR SINE MIR -11 251 31 242 248 153 29 chr3 31708201 31708338 -195816240 + MIR SINE MIR 95 248 -14 945 286 48 60 chr3 31708720 31709322 -195815256 - L1MEc LINE L1 -5484 912 318 1383 225 43 33 chr3 31709322 31709651 -195814927 - MLT2B3 LTR ERVL 0 554 223 207 0 0 0 chr3 31709658 31709681 -195814897 + (CA)n Simple_repeat Simple_repeat 2 24 0 1071 156 58 44 chr3 31709732 31709746 -195814832 - MLT2B2 LTR ERVL -285 230 218 261 0 0 0 chr3 31709746 31709775 -195814803 + (CA)n Simple_repeat Simple_repeat 2 30 0 207 0 0 0 chr3 31709774 31709797 -195814781 + (GA)n Simple_repeat Simple_repeat 2 24 0 * 1071 156 58 44 chr3 31709775 31710007 -195814571 - MLT2B2 LTR ERVL -297 218 3 647 290 63 20 chr3 31710009 31710261 -195814317 - L1MEc LINE L1 -6074 322 60 368 360 146 15 chr3 31710291 31710552 -195814026 + L2 LINE L2 2978 3272 0 2513 106 13 8 chr3 31710756 31711133 -195813445 - L1PA16 LINE L1 -13 6153 5775 25 0 0 0 chr3 31711356 31711381 -195813197 + GC_rich Low_complexity Low_complexity 1 25 0 414 148 219 118 chr3 31711575 31711679 -195812899 + MER53 DNA DNA 1 93 -96 2359 82 10 0 chr3 31711679 31711970 -195812608 - AluSp SINE Alu -19 294 1 414 148 219 118 chr3 31711970 31712034 -195812544 + MER53 DNA DNA 93 186 -3 453 281 228 34 chr3 31712057 31712377 -195812201 + MLT1J2 LTR MaLR 59 440 -10 653 317 78 58 chr3 31712415 31712643 -195811935 + L2 LINE L2 2271 2493 -779 2209 125 0 22 chr3 31712643 31712962 -195811616 - AluSx SINE Alu 0 312 1 653 317 78 58 chr3 31712962 31713282 -195811296 + L2 LINE L2 2493 2857 -415 2026 134 0 22 chr3 31713282 31713596 -195810982 - AluSq SINE Alu -6 307 1 653 317 78 58 chr3 31713596 31713827 -195810751 + L2 LINE L2 2857 3082 -190 270 204 0 0 chr3 31713969 31714018 -195810560 - MLT1G LTR MaLR -1 589 541 1837 155 0 7 chr3 31715372 31715662 -195808916 + AluJb SINE Alu 2 289 -23 451 149 40 0 chr3 31715689 31715763 -195808815 + MER81 DNA DNA 36 112 -2 518 145 24 0 chr3 31716080 31716163 -195808415 + AluJb SINE Alu 3 87 -225 1447 132 48 0 chr3 31716352 31716579 -195807999 + AluJb SINE Alu 63 300 -12 1672 128 4 0 chr3 31716913 31717140 -195807438 - AluSx SINE Alu -79 233 6 446 299 21 43 chr3 31717144 31717469 -195807109 - L1M4 LINE L1 -1452 4694 4377 1577 163 83 0 chr3 31717491 31717768 -195806810 + AluJb SINE Alu 5 304 -8 2240 131 0 0 chr3 31717819 31718125 -195806453 - AluJb SINE Alu -6 306 1 333 220 51 51 chr3 31718553 31718671 -195805907 + L1M2 LINE L1 5593 5710 -602 2271 104 0 10 chr3 31718995 31719294 -195805284 - AluSx SINE Alu -16 296 1 2124 111 20 7 chr3 31719294 31719592 -195804986 - AluSx SINE Alu -9 303 2 373 245 53 49 chr3 31719598 31719736 -195804842 - L1M3 LINE L1 -737 5434 5283 2287 107 0 0 chr3 31719736 31720036 -195804542 - AluSx SINE Alu -12 300 1 373 245 53 49 chr3 31720036 31720133 -195804445 - L1M3 LINE L1 -888 5283 5188 2823 132 53 12 chr3 31720380 31720866 -195803712 - L1MA8 LINE L1 0 6291 5786 27 0 0 0 chr3 31721012 31721039 -195803539 + AT_rich Low_complexity Low_complexity 1 27 0 690 263 103 62 chr3 31721040 31721090 -195803488 - HAL1 LINE L1 -28 2479 2432 1711 140 19 53 chr3 31721090 31721412 -195803166 + AluJo SINE Alu 1 311 -1 690 263 103 62 chr3 31721412 31721763 -195802815 - HAL1 LINE L1 -75 2432 2042 2403 95 0 3 chr3 31721763 31722068 -195802510 - AluSx SINE Alu -8 304 1 690 263 103 62 chr3 31722068 31722278 -195802300 - HAL1 LINE L1 -465 2042 1842 1203 70 0 19 chr3 31722282 31722438 -195802140 - AluSg1 SINE Alu -156 153 1 250 214 43 29 chr3 31722447 31722517 -195802061 - HAL1 LINE L1 -698 1809 1739 1293 275 43 88 chr3 31722537 31723011 -195801567 - HAL1 LINE L1 -1048 1459 965 1736 98 0 5 chr3 31723011 31723235 -195801343 - AluSg/x SINE Alu -18 294 72 1293 275 43 88 chr3 31723235 31723377 -195801201 - HAL1 LINE L1 -1542 965 818 2273 116 0 0 chr3 31723377 31723678 -195800900 - AluSq SINE Alu -12 301 1 2010 136 7 3 chr3 31723680 31723975 -195800603 - AluSx SINE Alu -16 296 1 1293 275 43 88 chr3 31723975 31724443 -195800135 - HAL1 LINE L1 -1690 817 420 1038 292 113 3 chr3 31724508 31724899 -195799679 + LTR16A LTR ERVL 2 435 -15 420 232 161 0 chr3 31724949 31725061 -195799517 - LTR16A LTR ERVL -316 134 5 184 283 0 0 chr3 31725223 31725269 -195799309 + MIR SINE MIR 85 130 -78 832 194 94 0 chr3 31725275 31725435 -195799143 - FAM SINE Alu 0 175 1 281 309 56 8 chr3 31725435 31725561 -195799017 + MIR SINE MIR 112 243 -19 200 345 0 0 chr3 31725668 31725723 -195798855 + L3 LINE CR1 578 632 -945 26 64 0 0 chr3 31725723 31725770 -195798808 + AT_rich Low_complexity Low_complexity 1 47 0 282 95 0 0 chr3 31726130 31726172 -195798406 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2835 153 10 85 chr3 31726244 31726834 -195797744 - MER52A LTR ERV1 0 1755 1210 3143 178 193 63 chr3 31726937 31728059 -195796519 - MER52A LTR ERV1 -406 1349 1 602 275 96 23 chr3 31728116 31728422 -195796156 - L1ME LINE L1 -526 5636 5299 2219 105 3 0 chr3 31728422 31728716 -195795862 - AluSg SINE Alu -15 295 1 602 275 96 23 chr3 31728716 31728762 -195795816 - L1ME LINE L1 -863 5299 5258 737 169 23 8 chr3 31728899 31729029 -195795549 - FLAM_C SINE Alu -1 132 1 428 224 64 8 chr3 31729477 31729602 -195794976 - L1ME LINE L1 -1454 4692 4561 329 340 67 10 chr3 31729639 31729833 -195794745 - L1ME LINE L1 -1674 4472 4268 23 0 0 0 chr3 31730536 31730559 -195794019 + AT_rich Low_complexity Low_complexity 1 23 0 345 326 62 0 chr3 31730645 31730789 -195793789 - L2 LINE L2 -5 3267 3115 364 229 62 26 chr3 31730870 31730986 -195793592 + MLT1E LTR MaLR 20 143 -412 1956 170 0 0 chr3 31731146 31731458 -195793120 - AluJb SINE Alu 0 312 1 2278 101 7 3 chr3 31731493 31731799 -195792779 - AluSg1 SINE Alu -2 307 1 218 269 0 0 chr3 31732488 31732540 -195792038 - L3 LINE CR1 -781 796 745 * 417 306 15 58 chr3 31732530 31732736 -195791842 + L3 LINE CR1 799 995 -582 388 289 153 52 chr3 31732743 31733169 -195791409 - L1 LINE L1 -747 5399 4931 938 124 8 0 chr3 31733223 31733352 -195791226 - FLAM_C SINE Alu -3 130 1 487 212 8 61 chr3 31733656 31733788 -195790790 + L2 LINE L2 3185 3309 -4 237 383 87 7 chr3 31733816 31733965 -195790613 + L2 LINE L2 2917 3077 -195 198 0 0 0 chr3 31733999 31734021 -195790557 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 3739 67 5 0 chr3 31734021 31734467 -195790111 - L1PA7 LINE L1 -10 6144 5697 261 200 62 15 chr3 31734839 31734904 -195789674 - L1MA10 LINE L1 0 6334 6267 923 149 0 8 chr3 31735064 31735198 -195789380 + FLAM_C SINE Alu 1 133 0 458 284 0 45 chr3 31735949 31736104 -195788474 + MIR SINE MIR 2 149 -113 526 279 82 19 chr3 31736351 31736559 -195788019 + LTR33 LTR ERVL 301 521 0 727 286 36 14 chr3 31737854 31738074 -195786504 + MIR SINE MIR 26 250 -12 3102 147 8 77 chr3 31738487 31739126 -195785452 - L1 LINE L1 -1141 5005 4411 2413 125 35 13 chr3 31739126 31739503 -195785075 - Tigger2 DNA MER2_type 0 2718 2334 5087 183 32 7 chr3 31739649 31740703 -195783875 - L1 LINE L1 -2502 3644 2564 350 144 0 0 chr3 31740744 31740812 -195783766 - L1MC4 LINE L1 -261 7628 7480 300 222 49 0 chr3 31740903 31740984 -195783594 + L1ME3A LINE L1 5793 5877 -293 200 190 35 52 chr3 31741533 31741591 -195782987 - L2 LINE L2 -32 3281 3225 531 235 207 35 chr3 31741600 31741919 -195782659 - L1M4 LINE L1 -978 5168 4795 969 287 42 44 chr3 31742034 31742275 -195782303 - L1MEc LINE L1 -2200 3929 3689 2143 129 23 0 chr3 31742275 31742577 -195782001 - AluJb SINE Alu -3 309 1 969 287 42 44 chr3 31742577 31742903 -195781675 - L1MEc LINE L1 -2440 3689 3363 529 276 57 70 chr3 31742902 31743080 -195781498 - L1MEc LINE L1 -3311 2818 2639 * 1812 135 0 96 chr3 31743080 31743286 -195781292 - AluJo SINE Alu -10 302 139 1953 143 3 10 chr3 31743286 31743617 -195780961 + AluSq SINE Alu 1 313 0 1812 135 0 96 chr3 31743617 31743744 -195780834 - AluJo SINE Alu -173 139 1 529 276 57 70 chr3 31743744 31744010 -195780568 - L1MEc LINE L1 -3490 2639 2380 2206 107 140 48 chr3 31744010 31744077 -195780501 - MSTA LTR MaLR 0 428 369 1824 146 59 3 chr3 31744077 31744364 -195780214 + AluSx SINE Alu 1 303 -9 2206 107 140 48 chr3 31744364 31744688 -195779890 - MSTA LTR MaLR -59 369 1 529 276 57 70 chr3 31744688 31744772 -195779806 - L1MEc LINE L1 -3749 2380 2296 702 266 47 21 chr3 31744772 31745005 -195779573 + LTR33 LTR ERVL 1 239 -282 312 241 37 0 chr3 31745221 31745329 -195779249 - L1MEc LINE L1 -3858 2271 2160 192 40 0 0 chr3 31745364 31745389 -195779189 + (TA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr3 31745417 31745440 -195779138 + AT_rich Low_complexity Low_complexity 1 23 0 546 135 54 9 chr3 31745552 31745663 -195778915 - LTR9B LTR ERV1 -84 560 445 427 321 103 31 chr3 31745893 31746072 -195778506 - L1MEc LINE L1 -4573 1737 1572 1746 171 3 22 chr3 31746072 31746387 -195778191 - AluSx SINE Alu -3 309 1 427 321 103 31 chr3 31746387 31746596 -195777982 - L1MEc LINE L1 -4738 1572 1321 2230 120 3 0 chr3 31746607 31746915 -195777663 - AluSp SINE Alu -4 309 1 450 309 23 28 chr3 31746950 31747167 -195777411 - L1MEc LINE L1 -4893 1226 1011 683 279 46 67 chr3 31747203 31747594 -195776984 - L1MEc LINE L1 -5269 850 468 199 386 8 38 chr3 31748022 31748154 -195776424 + L2 LINE L2 2840 2967 -305 456 176 0 0 chr3 31748443 31748517 -195776061 - MER96 DNA MER1_type? -8 167 94 433 219 125 0 chr3 31748630 31748726 -195775852 + L2 LINE L2 3206 3313 0 362 372 7 7 chr3 31749012 31749157 -195775421 - MER5B DNA MER1_type -30 148 4 886 271 118 36 chr3 31750280 31750779 -195773799 - MLT1H1 LTR MaLR 0 555 16 598 270 58 5 chr3 31750826 31751015 -195773563 - MIR SINE MIR -59 203 5 317 219 41 0 chr3 31751597 31751670 -195772908 - L2 LINE L2 -55 3217 3142 355 282 86 55 chr3 31751722 31751977 -195772601 + MLT1J LTR MaLR 2 264 -247 1032 154 21 27 chr3 31752322 31752510 -195772068 - MER53 DNA DNA 0 189 3 194 194 0 0 chr3 31752560 31752596 -195771982 + L2 LINE L2 3262 3297 -16 770 188 65 24 chr3 31753036 31753206 -195771372 - FRAM SINE Alu -6 170 1 235 347 107 20 chr3 31755197 31755347 -195769231 + L2 LINE L2 2455 2617 -697 205 288 17 0 chr3 31755368 31755427 -195769151 + MIR SINE MIR 14 73 -189 351 0 0 0 chr3 31755427 31755466 -195769112 + (TG)n Simple_repeat Simple_repeat 1 39 0 2161 113 3 0 chr3 31755485 31755767 -195768811 - AluSp SINE Alu -30 283 1 434 279 71 7 chr3 31755771 31755911 -195768667 + MIR SINE MIR 70 218 -44 624 254 108 75 chr3 31756081 31756443 -195768135 + MLT1H LTR MaLR 110 490 -59 2265 12 0 4 chr3 31756443 31756692 -195767886 - AluY SINE Alu -4 307 60 624 254 108 75 chr3 31756692 31756755 -195767823 + MLT1H LTR MaLR 490 549 0 441 268 57 0 chr3 31756809 31756932 -195767646 - MER94 DNA DNA -3 131 2 203 346 48 39 chr3 31757414 31757518 -195767060 + L2 LINE L2 3160 3264 -8 557 267 86 14 chr3 31757582 31757792 -195766786 - LTR16A LTR ERVL -10 440 216 1145 147 99 4 chr3 31758027 31758259 -195766319 + L1PB1 LINE L1 5894 6147 -4 23 0 0 0 chr3 31758259 31758282 -195766296 + AT_rich Low_complexity Low_complexity 1 23 0 408 281 7 33 chr3 31758299 31758452 -195766126 - L2 LINE L2 -144 3169 3021 2103 113 0 7 chr3 31758457 31758750 -195765828 + AluJb SINE Alu 5 295 -17 525 173 0 0 chr3 31758775 31758856 -195765722 + AluJ/FLAM SINE Alu 2 82 -230 1331 234 50 50 chr3 31758869 31759297 -195765281 - L2 LINE L2 -302 3011 2586 2456 43 3 0 chr3 31759297 31759579 -195764999 + L1PA5 LINE L1 5869 6151 -3 991 138 132 0 chr3 31759580 31759747 -195764831 + L1MC1 LINE L1 5857 6045 -288 5644 178 5 24 chr3 31759866 31761248 -195763330 - L1P5 LINE L1 -680 5471 4120 180 111 0 0 chr3 31761912 31761939 -195762639 + (CA)n Simple_repeat Simple_repeat 2 28 0 323 350 14 14 chr3 31762751 31762891 -195761687 + L2 LINE L2 2721 2860 -454 2017 144 0 3 chr3 31762891 31763189 -195761389 - AluJb SINE Alu -6 306 10 259 146 0 0 chr3 31763283 31763324 -195761254 - L2 LINE L2 -5 3308 3268 558 259 105 41 chr3 31763449 31763715 -195760863 + MLT1G1 LTR MaLR 8 290 -305 201 74 0 0 chr3 31764987 31765014 -195759564 + (TATAA)n Simple_repeat Simple_repeat 4 30 0 47 53 0 0 chr3 31766777 31766852 -195757726 + GC_rich Low_complexity Low_complexity 1 75 0 832 146 0 23 chr3 31767066 31767196 -195757382 - AluJo SINE Alu -151 161 35 41 58 0 0 chr3 31767330 31767399 -195757179 + AT_rich Low_complexity Low_complexity 1 69 0 1544 169 169 12 chr3 31767408 31767740 -195756838 - MLT2C1 LTR ERVL 0 397 14 26 0 0 0 chr3 31767837 31767863 -195756715 + AT_rich Low_complexity Low_complexity 1 26 0 5293 85 17 1 chr3 31768658 31769349 -195755229 + L1PA8 LINE L1 5471 6172 0 1107 161 0 6 chr3 31769815 31769995 -195754583 + AluJb SINE Alu 120 298 -14 21 36 0 0 chr3 31770363 31770391 -195754187 + AT_rich Low_complexity Low_complexity 1 28 0 1205 62 0 0 chr3 31770948 31771094 -195753484 - L1PA8 LINE L1 -8 6164 6019 198 375 38 51 chr3 31771339 31771574 -195753004 + L2 LINE L2 2627 2858 -456 604 262 24 6 chr3 31771647 31771815 -195752763 - MIR SINE MIR -24 238 68 1669 205 30 0 chr3 31773546 31773883 -195750695 + L1MB7 LINE L1 5825 6171 -13 195 250 0 0 chr3 31774556 31774596 -195749982 - L2 LINE L2 -236 3036 2997 249 324 44 29 chr3 31775571 31775707 -195748871 + MIR SINE MIR 79 216 -46 21 0 0 0 chr3 31775741 31775762 -195748816 + AT_rich Low_complexity Low_complexity 1 21 0 857 180 101 39 chr3 31776072 31776250 -195748328 - MER5A DNA MER1_type 0 189 1 295 277 125 60 chr3 31776261 31776900 -195747678 - L1 LINE L1 -2505 3641 2961 362 304 52 25 chr3 31777284 31777610 -195746968 + L1ME3A LINE L1 3623 3957 -2189 264 219 10 182 chr3 31777829 31778021 -195746557 - MLT1H LTR MaLR -129 420 262 311 349 50 42 chr3 31778239 31778500 -195746078 + L1ME3A LINE L1 4077 4339 -1807 961 300 36 70 chr3 31778502 31778919 -195745659 - L2 LINE L2 -3 3310 2908 1779 208 152 9 chr3 31779292 31779734 -195744844 - MLT1D LTR MaLR 0 505 1 292 225 29 104 chr3 31779979 31780114 -195744464 + L1ME3A LINE L1 5316 5437 -2371 1427 216 154 38 chr3 31780114 31780563 -195744015 - MLT1D LTR MaLR -4 501 1 292 225 29 104 chr3 31780563 31780600 -195743978 + L1ME3A LINE L1 5437 5475 -2333 277 274 98 65 chr3 31780681 31781017 -195743561 + L1ME3A LINE L1 5462 5808 -313 214 306 24 57 chr3 31781144 31781268 -195743310 + MIR3 SINE MIR 37 156 -52 286 313 98 0 chr3 31781499 31781604 -195742974 + MARNA DNA Mariner 425 543 -43 213 65 0 0 chr3 31781604 31781635 -195742943 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 2640 45 0 3 chr3 31782127 31782439 -195742139 - AluY SINE Alu 0 311 1 295 309 31 10 chr3 31782686 31782783 -195741795 + MIR SINE MIR 88 186 -76 487 242 113 26 chr3 31783040 31783234 -195741344 + L1ME3A LINE L1 5959 6169 -1 324 323 46 15 chr3 31783349 31783479 -195741099 - MER5A DNA MER1_type -4 185 52 659 187 26 26 chr3 31783529 31783684 -195740894 - MER5B DNA MER1_type -18 160 6 339 288 82 34 chr3 31785383 31785402 -195739176 - MIR3 SINE MIR -32 176 159 712 162 246 0 chr3 31785402 31785569 -195739009 - MER3 DNA MER1_type 0 209 2 339 288 82 34 chr3 31785569 31785695 -195738883 - MIR3 SINE MIR -49 159 24 528 256 109 56 chr3 31786643 31786964 -195737614 - MLT1L LTR MaLR -82 533 196 984 232 152 45 chr3 31786988 31787480 -195737098 - MLT1H LTR MaLR -4 545 1 22 35 0 0 chr3 31788442 31788471 -195736107 + AT_rich Low_complexity Low_complexity 1 29 0 402 274 91 32 chr3 31788716 31788902 -195735676 - L2 LINE L2 -5 3267 3071 651 245 175 37 chr3 31789345 31789479 -195735099 - L1MC/D LINE L1 -1985 5823 5709 186 103 0 0 chr3 31789479 31789508 -195735070 + (CATATA)n Simple_repeat Simple_repeat 6 34 0 651 245 175 37 chr3 31789508 31789642 -195734936 - L1MC/D LINE L1 -2099 5709 5518 1931 163 46 0 chr3 31789668 31789993 -195734585 - MER2 DNA MER2_type -1 343 4 203 286 0 0 chr3 31791871 31791920 -195732658 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 356 169 14 0 chr3 31791980 31792051 -195732527 - MER116 DNA Mariner -8 72 1 839 232 40 16 chr3 31792453 31792703 -195731875 + MER112 DNA MER1_type 1 256 0 1514 192 10 70 chr3 31795167 31795553 -195729025 - MLT1A2 LTR MaLR -11 363 1 35643 33 25 1 chr3 31795812 31801216 -195723362 - L1PA3 LINE L1 0 6155 617 732 43 0 0 chr3 31801216 31801308 -195723270 - L1PA3 LINE L1 -6054 92 1 634 194 35 14 chr3 31801364 31801508 -195723070 - Charlie4 DNA MER1_type 0 1961 1815 1054 286 99 50 chr3 31802863 31803420 -195721158 - MLT1K LTR MaLR -4 584 1 2326 94 0 13 chr3 31804499 31804807 -195719771 + AluSg SINE Alu 6 309 -1 1418 195 30 30 chr3 31805873 31806171 -195718407 + AluJo SINE Alu 2 299 -13 390 292 76 32 chr3 31806437 31806622 -195717956 - MIR SINE MIR -21 241 49 765 294 134 34 chr3 31809172 31809529 -195715049 + L3 LINE CR1 1165 1557 -20 21 0 0 0 chr3 31810870 31810891 -195713687 + AT_rich Low_complexity Low_complexity 1 21 0 2474 60 9 0 chr3 31810932 31811264 -195713314 - L1P3 LINE L1 -426 5728 5394 2124 69 76 0 chr3 31811264 31811550 -195713028 + L1PA7 LINE L1 5842 6152 -2 1037 189 17 0 chr3 31812613 31812793 -195711785 - MER5A DNA MER1_type -6 183 1 25 0 0 0 chr3 31813129 31813154 -195711424 + AT_rich Low_complexity Low_complexity 1 25 0 1093 289 74 21 chr3 31813165 31813759 -195710819 + L2 LINE L2 2690 3312 -1 306 320 88 20 chr3 31815135 31815282 -195709296 + MIR SINE MIR 8 164 -98 1591 198 63 27 chr3 31815284 31815694 -195708884 + LTR40c LTR ERVL 1 425 -40 2333 101 0 0 chr3 31815937 31816234 -195708344 + AluSx SINE Alu 1 297 -15 1830 175 52 70 chr3 31816730 31817244 -195707334 - MLT1D LTR MaLR 0 505 1 1913 175 91 0 chr3 31817695 31818078 -195706500 - MSTB LTR MaLR 0 426 9 399 257 50 29 chr3 31818202 31818342 -195706236 - L2 LINE L2 0 3313 3171 413 250 0 60 chr3 31818427 31818527 -195706051 - MER5A DNA MER1_type -87 102 9 420 314 17 29 chr3 31818543 31818718 -195705860 - MER5B DNA MER1_type 0 178 6 766 229 27 33 chr3 31818762 31818945 -195705633 + MER5A DNA MER1_type 6 187 -2 371 318 110 17 chr3 31818955 31819128 -195705450 - MER5B DNA MER1_type 0 189 1 888 144 0 4 chr3 31820381 31820601 -195703977 + AluJb SINE Alu 5 300 -12 438 249 112 66 chr3 31820774 31820898 -195703680 + MIR SINE MIR 43 181 -81 2097 108 17 0 chr3 31820898 31821185 -195703393 + AluSx SINE Alu 1 292 -20 438 249 112 66 chr3 31821185 31821257 -195703321 + MIR SINE MIR 181 248 -14 1018 120 0 0 chr3 31821341 31821483 -195703095 + FRAM SINE Alu 23 164 -12 196 98 24 24 chr3 31821483 31821524 -195703054 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 885 248 16 50 chr3 31821714 31821972 -195702606 - MIR SINE MIR 0 262 14 21 36 0 0 chr3 31822010 31822038 -195702540 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr3 31822202 31822232 -195702346 + AT_rich Low_complexity Low_complexity 1 30 0 1598 212 18 18 chr3 31822243 31822629 -195701949 + L1ME1 LINE L1 5695 6080 -86 1158 149 6 0 chr3 31822629 31822797 -195701781 - AluSg/x SINE Alu -10 302 134 2385 93 0 0 chr3 31822797 31823099 -195701479 - AluSg SINE Alu -8 302 1 29993 53 5 1 chr3 31824184 31829047 -195695531 + L1PA3 LINE L1 1266 6147 -8 5323 51 4 23 chr3 31829071 31829762 -195694816 + L1PA5 LINE L1 5475 6152 -2 284 48 24 0 chr3 31829781 31829823 -195694755 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1156 148 33 86 chr3 31829824 31830255 -195694323 + Charlie1 DNA MER1_type 132 2761 0 897 65 0 0 chr3 31830336 31830459 -195694119 + L1PA4 LINE L1 6029 6151 -4 243 0 0 0 chr3 31832084 31832111 -195692467 + (T)n Simple_repeat Simple_repeat 1 27 0 217 182 23 0 chr3 31832967 31833011 -195691567 + (CA)n Simple_repeat Simple_repeat 1 45 0 226 304 252 7 chr3 31834262 31834397 -195690181 - MIR3 SINE MIR -11 197 30 838 233 93 43 chr3 31838240 31838562 -195686016 + MER113 DNA MER1_type? 136 473 -48 261 333 78 0 chr3 31838611 31838701 -195685877 - MIR3 SINE MIR -48 160 64 1244 223 49 21 chr3 31838737 31839065 -195685513 - MLT1E LTR MaLR -256 337 1 253 203 94 0 chr3 31839067 31839131 -195685447 + L1MC5 LINE L1 7859 7928 -33 1659 143 56 28 chr3 31839218 31839505 -195685073 + AluJb SINE Alu 1 295 -17 247 327 140 20 chr3 31839590 31839740 -195684838 - L2 LINE L2 -3 3269 3102 401 259 149 45 chr3 31839833 31840122 -195684456 + MLT1H1 LTR MaLR 1 319 -236 226 132 0 0 chr3 31840123 31840161 -195684417 + MLT1H1 LTR MaLR 489 526 -4 * 325 185 0 0 chr3 31840129 31840183 -195684395 + MLT1G1 LTR MaLR 541 594 -1 358 293 66 9 chr3 31841394 31841500 -195683078 - MIR3 SINE MIR -85 123 12 399 233 19 19 chr3 31841759 31841862 -195682716 - MIR SINE MIR -56 206 104 234 0 0 0 chr3 31841971 31841997 -195682581 + (T)n Simple_repeat Simple_repeat 1 26 0 406 148 333 9 chr3 31842351 31842459 -195682119 - MER5A DNA MER1_type -45 144 2 644 314 89 3 chr3 31843737 31844074 -195680504 + L1ME3A LINE L1 5477 5842 -279 522 197 179 0 chr3 31844118 31844235 -195680343 + L1ME3A LINE L1 6033 6170 0 242 208 0 0 chr3 31844293 31844341 -195680237 + L1MC4 LINE L1 6658 6705 -1337 2353 163 14 3 chr3 31844633 31844994 -195679584 + MLT1A1 LTR MaLR 1 365 0 579 270 6 31 chr3 31845528 31845691 -195678887 - MIR SINE MIR -16 246 88 226 325 74 49 chr3 31845990 31846153 -195678425 + MIR SINE MIR 84 250 -12 258 32 0 0 chr3 31846802 31846833 -195677745 + (GA)n Simple_repeat Simple_repeat 2 32 0 250 209 374 0 chr3 31847256 31847371 -195677207 + MER5A DNA MER1_type 9 166 -23 865 162 132 6 chr3 31848076 31848243 -195676335 - MER5A DNA MER1_type -1 188 1 334 120 27 0 chr3 31848931 31849006 -195675572 + (TA)n Simple_repeat Simple_repeat 2 78 0 24 0 0 0 chr3 31849014 31849038 -195675540 + AT_rich Low_complexity Low_complexity 1 24 0 555 277 242 18 chr3 31850380 31851081 -195673497 - L2 LINE L2 -13 3300 2454 297 290 89 32 chr3 31851624 31851748 -195672830 - MIR SINE MIR -130 132 2 1824 181 0 6 chr3 31852482 31852796 -195671782 - AluJo SINE Alu 0 312 1 598 242 140 69 chr3 31853386 31853963 -195670615 - MLT1H1 LTR MaLR 0 590 1 392 244 224 49 chr3 31854492 31854738 -195669840 + L2 LINE L2 3024 3312 -1 682 290 108 0 chr3 31855202 31855416 -195669162 + MIR SINE MIR 4 240 -22 348 257 83 35 chr3 31855814 31855958 -195668620 + MIR SINE MIR 16 166 -96 319 232 95 21 chr3 31856463 31856558 -195668020 + MIR SINE MIR 95 196 -66 606 251 72 39 chr3 31857445 31857652 -195666926 + MIR SINE MIR 14 227 -35 807 194 34 23 chr3 31857787 31857962 -195666616 - MIR3 SINE MIR -2 206 30 534 259 161 5 chr3 31858252 31858445 -195666133 - MIR SINE MIR -21 241 19 183 204 0 0 chr3 31858905 31858949 -195665629 + T-rich Low_complexity Low_complexity 1 44 0 22 56 0 0 chr3 31860389 31860425 -195664153 + AT_rich Low_complexity Low_complexity 1 36 0 418 322 23 12 chr3 31860820 31860991 -195663587 - MIR SINE MIR -19 243 71 2171 117 0 0 chr3 31861246 31861536 -195663042 - AluSx SINE Alu -22 290 1 924 135 0 0 chr3 31861536 31861669 -195662909 - AluSq/x SINE Alu -177 135 3 2064 104 0 4 chr3 31865801 31866069 -195658509 + AluSq SINE Alu 13 279 -34 363 44 0 0 chr3 31866073 31866118 -195658460 + (GAAA)n Simple_repeat Simple_repeat 2 46 0 342 307 137 0 chr3 31866298 31866451 -195658127 - MIR3 SINE MIR -5 203 30 357 320 58 0 chr3 31867441 31867544 -195657034 - L2 LINE L2 -8 3264 3156 783 136 55 1 chr3 31867586 31867739 -195656839 + L1M4 LINE L1 5352 5512 -672 1742 163 3 20 chr3 31870636 31870942 -195653636 - AluJo SINE Alu -11 301 1 800 285 131 33 chr3 31871186 31871532 -195653046 + Charlie8 DNA MER1_type 45 447 -1970 2021 113 0 42 chr3 31871532 31871841 -195652737 - AluSq SINE Alu -17 296 1 800 285 131 33 chr3 31871841 31871946 -195652632 + Charlie8 DNA MER1_type 447 540 -1877 291 54 0 0 chr3 31871947 31871984 -195652594 + (TC)n Simple_repeat Simple_repeat 1 37 0 1324 133 48 9 chr3 31872757 31872839 -195651739 + MER20 DNA MER1_type 1 78 -141 387 0 0 0 chr3 31872839 31872882 -195651696 + (TG)n Simple_repeat Simple_repeat 2 44 0 1324 133 48 9 chr3 31872882 31873009 -195651569 + MER20 DNA MER1_type 78 218 -1 284 210 12 0 chr3 31874542 31874623 -195649955 + GA-rich Low_complexity Low_complexity 1 82 0 336 24 0 0 chr3 31874729 31874770 -195649808 + (CA)n Simple_repeat Simple_repeat 2 42 0 222 91 0 0 chr3 31874929 31874962 -195649616 + (CCCCCA)n Simple_repeat Simple_repeat 2 34 0 201 343 30 30 chr3 31880031 31880130 -195644448 - L2 LINE L2 -3 3269 3171 180 0 0 0 chr3 31881601 31881621 -195642957 + (TA)n Simple_repeat Simple_repeat 2 21 0 329 330 8 25 chr3 31881623 31881741 -195642837 - MER5B DNA MER1_type -61 117 2 1060 284 56 62 chr3 31882192 31882657 -195641921 + MLT1J LTR MaLR 6 467 -44 396 218 79 0 chr3 31882657 31882758 -195641820 + MIR SINE MIR 131 239 -23 186 53 105 0 chr3 31882765 31882822 -195641756 + (TA)n Simple_repeat Simple_repeat 2 64 0 1564 294 134 24 chr3 31882824 31882871 -195641707 + L2 LINE L2 2128 2168 -1104 1109 206 53 0 chr3 31882871 31883080 -195641498 + MER58A DNA MER1_type 5 224 0 1564 294 134 24 chr3 31883080 31883866 -195640712 + L2 LINE L2 2168 3053 -219 295 277 142 27 chr3 31884709 31884857 -195639721 - MIR3 SINE MIR -3 205 41 254 209 45 30 chr3 31885252 31885319 -195639259 - MER103 DNA DNA -3 163 96 946 145 111 12 chr3 31886294 31886466 -195638112 + MER5A DNA MER1_type 1 189 0 220 302 16 0 chr3 31887194 31887257 -195637321 - MIR SINE MIR -32 230 167 25 97 0 0 chr3 31887282 31887313 -195637265 + AT_rich Low_complexity Low_complexity 1 31 0 626 210 9 101 chr3 31888061 31888117 -195636461 + L1MC4 LINE L1 7449 7509 -533 817 212 20 7 chr3 31888117 31888268 -195636310 + FRAM SINE Alu 1 153 -13 626 210 9 101 chr3 31888268 31888430 -195636148 + L1MC4 LINE L1 7509 7647 -395 * 964 155 20 50 chr3 31888399 31888599 -195635979 + L1MA7 LINE L1 5851 6044 -247 706 165 76 0 chr3 31888602 31888760 -195635818 + L1MA9 LINE L1 6137 6306 -6 244 255 20 61 chr3 31888778 31888876 -195635702 + L1MC4a LINE L1 7532 7625 -183 1250 187 53 62 chr3 31888991 31889328 -195635250 + L1MC4 LINE L1 7708 8041 -1 204 309 0 0 chr3 31891103 31891158 -195633420 - MIR SINE MIR -149 113 59 2428 53 0 0 chr3 31891677 31891994 -195632584 + AluY SINE Alu 1 317 0 534 267 184 9 chr3 31892369 31892586 -195631992 - MIR SINE MIR 0 262 8 186 316 0 0 chr3 31893030 31893087 -195631491 - MIR SINE MIR -15 247 191 2312 92 0 19 chr3 31893093 31893410 -195631168 - AluSx SINE Alu -1 311 1 26 0 0 0 chr3 31893417 31893443 -195631135 + AT_rich Low_complexity Low_complexity 1 26 0 228 330 55 0 chr3 31893459 31893550 -195631028 - MIR SINE MIR -74 188 93 404 271 53 26 chr3 31893926 31894097 -195630481 - L1MC/D LINE L1 -332 5789 5621 770 244 123 36 chr3 31894897 31895229 -195629349 + L1ME4a LINE L1 5758 6118 -3 494 203 87 14 chr3 31895911 31896049 -195628529 - MER5A DNA MER1_type -41 148 1 2371 103 3 0 chr3 31896400 31896702 -195627876 + AluSx SINE Alu 1 303 -9 518 246 16 0 chr3 31896975 31897097 -195627481 - MER5C DNA MER1_type -200 124 1 193 333 17 0 chr3 31897300 31897360 -195627218 + L2 LINE L2 3253 3313 0 22 0 0 0 chr3 31897768 31897790 -195626788 + AT_rich Low_complexity Low_complexity 1 22 0 258 262 79 35 chr3 31897987 31898174 -195626404 - MIR SINE MIR 0 262 7 205 182 0 0 chr3 31898477 31898510 -195626068 + (CA)n Simple_repeat Simple_repeat 1 33 0 234 0 0 0 chr3 31898591 31898617 -195625961 + (TA)n Simple_repeat Simple_repeat 2 27 0 25 31 0 0 chr3 31900790 31900822 -195623756 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr3 31901084 31901112 -195623466 + AT_rich Low_complexity Low_complexity 1 28 0 354 293 127 6 chr3 31902993 31903150 -195621428 - MER5B DNA MER1_type 0 178 3 4523 82 8 7 chr3 31903425 31904012 -195620566 + L1PB1 LINE L1 5564 6151 0 226 229 0 21 chr3 31904928 31904976 -195619602 - L2 LINE L2 -16 3297 3251 787 303 138 10 chr3 31905217 31905799 -195618779 + L2 LINE L2 2626 3300 -13 241 308 221 0 chr3 31905823 31905927 -195618651 - MIR SINE MIR -109 153 27 207 0 0 0 chr3 31906071 31906094 -195618484 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 336 246 164 0 chr3 31906127 31906237 -195618341 + MIR SINE MIR 132 259 -3 420 274 94 0 chr3 31907049 31907166 -195617412 + MIR SINE MIR 2 129 -133 237 333 12 0 chr3 31908086 31908170 -195616408 + MIR SINE MIR 160 244 -18 21 0 0 0 chr3 31908177 31908198 -195616380 + GC_rich Low_complexity Low_complexity 1 21 0 534 233 192 0 chr3 31911112 31911258 -195613320 + MER5A DNA MER1_type 9 182 -7 828 245 90 10 chr3 31911608 31911808 -195612770 - MIR SINE MIR -3 259 44 204 276 112 71 chr3 31911832 31912002 -195612576 - MIR3 SINE MIR -11 197 21 459 258 126 6 chr3 31912399 31912566 -195612012 - MIR SINE MIR -9 253 67 246 311 22 22 chr3 31912591 31912681 -195611897 - MIR SINE MIR -67 141 52 1761 143 39 18 chr3 31912862 31913148 -195611430 + AluJb SINE Alu 1 292 -20 41761 55 8 33 chr3 31913253 31919190 -195605388 + L1P2 LINE L1 2 5774 -380 7669 43 24 0 chr3 31919307 31920967 -195603611 + L1PA5 LINE L1 4465 6150 -4 1064 168 10 10 chr3 31921555 31921751 -195602827 + MER20 DNA MER1_type 24 219 0 2162 118 10 3 chr3 31922053 31922350 -195602228 + AluSq SINE Alu 1 299 -14 282 287 36 90 chr3 31923031 31923118 -195601460 - MIR3 SINE MIR 0 208 133 2292 87 12 43 chr3 31923118 31923253 -195601325 + AluSx SINE Alu 1 139 -173 2257 112 0 3 chr3 31923253 31923558 -195601020 + AluSg SINE Alu 1 304 -6 2292 87 12 43 chr3 31923558 31923744 -195600834 + AluSx SINE Alu 139 312 0 282 287 36 90 chr3 31923744 31923823 -195600755 - MIR3 SINE MIR -75 133 51 488 264 84 53 chr3 31925104 31925331 -195599247 - MIR SINE MIR -12 250 17 302 279 0 0 chr3 31926346 31926414 -195598164 + L2 LINE L2 3205 3272 0 * 509 273 125 23 chr3 31926363 31926579 -195597999 - MIR SINE MIR -21 241 4 1254 253 87 35 chr3 31926786 31927190 -195597388 + MLT1J2 LTR MaLR 24 448 -2 362 283 10 0 chr3 31927343 31927442 -195597136 + MIR3 SINE MIR 101 200 -8 2248 69 21 10 chr3 31927465 31927754 -195596824 + AluY SINE Alu 1 292 -19 53 30 0 0 chr3 31928196 31928263 -195596315 + AT_rich Low_complexity Low_complexity 1 67 0 2407 84 0 7 chr3 31929120 31929429 -195595149 + AluY SINE Alu 1 307 -4 183 222 0 0 chr3 31929453 31929498 -195595080 + T-rich Low_complexity Low_complexity 1 45 0 202 191 0 48 chr3 31929729 31929771 -195594807 - L2 LINE L2 -11 3302 3263 188 281 94 0 chr3 31929808 31929872 -195594706 - MIR SINE MIR -36 226 157 277 259 0 0 chr3 31929884 31929942 -195594636 - MER5B DNA MER1_type -115 63 6 32 26 0 0 chr3 31930010 31930049 -195594529 + AT_rich Low_complexity Low_complexity 1 39 0 1518 140 24 113 chr3 31930123 31930451 -195594127 + AluJb SINE Alu 4 302 -10 353 137 0 0 chr3 31930865 31930916 -195593662 - MER5A DNA MER1_type 0 189 139 181 196 0 71 chr3 31930975 31931031 -195593547 + MER5A DNA MER1_type 136 187 -2 639 244 29 29 chr3 31931038 31931210 -195593368 + MER5B DNA MER1_type 7 178 0 626 188 24 79 chr3 31931217 31931345 -195593233 - MER5B DNA MER1_type -14 164 45 1927 155 0 0 chr3 31931345 31931636 -195592942 + AluJb SINE Alu 1 291 -21 626 188 24 79 chr3 31931636 31931672 -195592906 - MER5B DNA MER1_type -133 45 9 210 233 17 17 chr3 31932036 31932096 -195592482 + MIR SINE MIR 81 140 -68 242 304 0 0 chr3 31932619 31932698 -195591880 + (ATGGTG)n Simple_repeat Simple_repeat 5 83 0 551 236 16 47 chr3 31934636 31934827 -195589751 + L1MC4 LINE L1 7858 8042 0 340 256 50 89 chr3 31935193 31935552 -195589026 + L1ME4a LINE L1 5531 5875 -246 285 347 10 0 chr3 31935921 31936019 -195588559 - MIR3 SINE MIR -17 191 93 411 283 19 8 chr3 31936113 31936294 -195588284 + L1M4 LINE L1 5240 5420 -742 925 209 65 23 chr3 31937892 31938107 -195586471 + MER58A DNA MER1_type 1 224 0 517 337 32 4 chr3 31939033 31939285 -195585293 + Charlie8 DNA MER1_type 3 261 -2156 968 161 17 11 chr3 31939625 31939799 -195584779 + AluJb SINE Alu 138 312 0 21 0 0 0 chr3 31940353 31940374 -195584204 + AT_rich Low_complexity Low_complexity 1 21 0 433 270 224 0 chr3 31940481 31940633 -195583945 + MER5A DNA MER1_type 4 189 0 252 298 31 78 chr3 31940962 31941153 -195583425 + MIR SINE MIR 7 188 -74 423 345 57 23 chr3 31941349 31941526 -195583052 + L2 LINE L2 3090 3272 0 412 139 0 14 chr3 31942252 31942324 -195582254 + MLT1K LTR MaLR 516 586 -2 251 301 197 5 chr3 31943774 31943987 -195580591 - L2 LINE L2 -573 2741 2488 200 260 68 41 chr3 31943994 31944067 -195580511 - L2 LINE L2 -47 3225 3151 432 295 240 18 chr3 31944363 31944477 -195580101 + L3 LINE CR1 901 988 -589 719 181 0 9 chr3 31944477 31944753 -195579825 + FLAM_A SINE Alu 1 275 0 432 295 240 18 chr3 31944753 31944964 -195579614 + L3 LINE CR1 988 1302 -275 284 363 44 39 chr3 31945947 31946129 -195578449 - L2 LINE L2 -402 2912 2730 386 127 127 0 chr3 31946227 31946298 -195578280 + MADE1 DNA Mariner 1 80 0 244 260 192 41 chr3 31947395 31947541 -195577037 + MIR SINE MIR 39 206 -56 222 241 0 37 chr3 31948657 31948711 -195575867 + CT-rich Low_complexity Low_complexity 3 54 0 222 37 0 0 chr3 31949388 31949415 -195575163 + (TG)n Simple_repeat Simple_repeat 1 27 0 2063 153 0 0 chr3 31950077 31950377 -195574201 - AluSx SINE Alu -12 300 1 463 167 0 0 chr3 31950635 31950707 -195573871 - FLAM SINE Alu -29 114 43 631 204 8 8 chr3 31950970 31951102 -195573476 - MER119 DNA MER1_type 0 583 452 408 300 67 0 chr3 31951105 31951225 -195573353 - MER119 DNA MER1_type -455 128 1 829 165 94 0 chr3 31951808 31951978 -195572600 - MER5A DNA MER1_type -1 188 3 553 211 186 0 chr3 31952868 31953024 -195571554 + MER5A DNA MER1_type 5 189 0 197 282 103 0 chr3 31953266 31953344 -195571234 - L3b LINE CR1 -396 1187 1102 189 271 51 76 chr3 31953686 31953804 -195570774 + L2 LINE L2 3154 3268 -4 425 196 98 127 chr3 31954164 31954337 -195570241 + MER5B DNA MER1_type 10 177 -1 669 286 162 53 chr3 31954363 31954999 -195569579 + L2 LINE L2 2615 3308 -5 738 212 8 86 chr3 31955167 31955412 -195569166 + L1MB7 LINE L1 5949 6174 -10 238 266 86 55 chr3 31956340 31956468 -195568110 - MIR SINE MIR -76 132 1 2283 93 0 0 chr3 31956766 31957046 -195567532 + AluSx SINE Alu 1 280 -32 261 57 0 0 chr3 31957046 31957081 -195567497 + (CAAAA)n Simple_repeat Simple_repeat 5 39 0 548 225 0 0 chr3 31957221 31957332 -195567246 + MIR SINE MIR 152 262 0 331 281 21 115 chr3 31958434 31958669 -195565909 - MIR SINE MIR 0 262 50 378 277 164 6 chr3 31958742 31958901 -195565677 - MIR SINE MIR -56 206 23 373 235 223 6 chr3 31959619 31959785 -195564793 + LTR50 LTR ERVL 2 203 -592 477 299 117 6 chr3 31959839 31960167 -195564411 + LTR50 LTR ERVL 345 795 0 245 157 0 20 chr3 31960999 31961050 -195563528 + MADE1 DNA Mariner 1 50 -30 362 111 0 0 chr3 31961081 31961135 -195563443 + MADE1 DNA Mariner 26 79 -1 1822 181 0 20 chr3 31961551 31961855 -195562723 + AluJo SINE Alu 2 299 -13 851 316 103 58 chr3 31962171 31963282 -195561296 + L1MC4a LINE L1 2816 3975 -2171 299 304 42 6 chr3 31963309 31963477 -195561101 + L1MC4a LINE L1 4674 4847 -1299 486 230 28 51 chr3 31963783 31964000 -195560578 + L1MC4a LINE L1 5736 5947 -1861 242 56 28 0 chr3 31964164 31964200 -195560378 + (CAATA)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr3 31964310 31964331 -195560247 + AT_rich Low_complexity Low_complexity 1 21 0 459 209 147 31 chr3 31964459 31964622 -195559956 - L2 LINE L2 0 3313 3132 543 246 56 26 chr3 31964718 31964913 -195559665 - Charlie8 DNA MER1_type -2180 237 37 283 315 64 46 chr3 31965160 31965217 -195559361 + MARNA DNA Mariner 286 340 -246 2224 54 15 97 chr3 31965217 31965548 -195559030 + AluY SINE Alu 1 304 -7 283 315 64 46 chr3 31965548 31965709 -195558869 + MARNA DNA Mariner 340 508 -78 238 357 0 0 chr3 31966399 31966469 -195558109 - L2 LINE L2 -15 3257 3188 195 68 23 45 chr3 31966487 31966531 -195558047 + (CAATA)n Simple_repeat Simple_repeat 3 45 0 438 328 90 17 chr3 31966692 31967058 -195557520 - L2 LINE L2 -222 3050 2655 1022 301 75 72 chr3 31967060 31968104 -195556474 - L2 LINE L2 -1084 2230 1184 443 272 76 38 chr3 31968135 31968293 -195556285 + MIR3 SINE MIR 35 198 -10 27 49 0 0 chr3 31968355 31968396 -195556182 + AT_rich Low_complexity Low_complexity 1 41 0 833 212 45 0 chr3 31968672 31968851 -195555727 - MER58A DNA MER1_type 0 224 38 442 273 52 38 chr3 31969862 31970038 -195554540 - MIR SINE MIR -58 150 3 450 237 160 30 chr3 31970043 31970212 -195554366 - MIR3 SINE MIR -14 194 4 207 0 0 0 chr3 31970753 31970776 -195553802 + (T)n Simple_repeat Simple_repeat 1 23 0 1383 166 59 7 chr3 31971020 31971291 -195553287 - L1MB8 LINE L1 -9 6169 5885 3267 252 116 85 chr3 31971687 31972353 -195552225 + L2 LINE L2 1165 1808 -1505 2433 78 7 7 chr3 31972353 31972661 -195551917 + AluSc SINE Alu 1 308 -1 3267 252 116 85 chr3 31972661 31974074 -195550504 + L2 LINE L2 1808 3305 -8 630 321 72 9 chr3 31974384 31974605 -195549973 - MIR SINE MIR -27 235 1 317 304 8 40 chr3 31974712 31974837 -195549741 + L2 LINE L2 3189 3309 -4 445 284 226 0 chr3 31975168 31975376 -195549202 + L2 LINE L2 2705 2959 -355 308 310 50 0 chr3 31975380 31975480 -195549098 - MIR SINE MIR -62 146 42 21 36 0 0 chr3 31976601 31976629 -195547949 + AT_rich Low_complexity Low_complexity 1 28 0 261 258 45 0 chr3 31976790 31976879 -195547699 + L1ME LINE L1 5666 5758 -363 187 133 44 0 chr3 31978049 31978094 -195546484 + GA-rich Low_complexity Low_complexity 2 48 0 1756 243 153 31 chr3 31978411 31978585 -195545993 + HAL1b LINE L1 127 278 -1070 2884 136 15 2 chr3 31978585 31979064 -195545514 + MER31A LTR ERV1 1 485 0 1756 243 153 31 chr3 31979064 31979951 -195544627 + HAL1b LINE L1 278 1318 -30 25 65 0 0 chr3 31979970 31980016 -195544562 + AT_rich Low_complexity Low_complexity 1 46 0 405 0 0 0 chr3 31980411 31980456 -195544122 + (CA)n Simple_repeat Simple_repeat 1 45 0 277 204 0 19 chr3 31980463 31980517 -195544061 - AluJ/FRAM SINE Alu -31 271 219 363 136 0 0 chr3 31980518 31980577 -195544001 + (CA)n Simple_repeat Simple_repeat 1 59 0 1669 167 0 39 chr3 31980588 31980870 -195543708 - AluJo SINE Alu -41 271 1 334 360 80 0 chr3 31981825 31981975 -195542603 + MIR3 SINE MIR 30 191 -17 197 0 0 67 chr3 31982914 31982944 -195541634 + (TTTAA)n Simple_repeat Simple_repeat 5 32 0 1629 198 3 13 chr3 31983197 31983535 -195541043 + AluJo SINE Alu 3 312 0 219 36 0 0 chr3 31984264 31984292 -195540286 + (CA)n Simple_repeat Simple_repeat 2 29 0 410 215 66 66 chr3 31984369 31984490 -195540088 - L2 LINE L2 -1 3312 3192 867 230 60 57 chr3 31984675 31985006 -195539572 + MER46C DNA MER2_type 7 338 0 355 57 0 19 chr3 31985333 31985386 -195539192 + MER113 DNA MER1_type? 142 193 -328 231 200 15 31 chr3 31985681 31985746 -195538832 + CT-rich Low_complexity Low_complexity 2 65 0 22 35 0 0 chr3 31986375 31986404 -195538174 + AT_rich Low_complexity Low_complexity 1 29 0 197 338 44 0 chr3 31986475 31986543 -195538035 + MIR3 SINE MIR 115 185 -23 292 299 21 70 chr3 31986887 31987074 -195537504 - MER5B DNA MER1_type 0 178 1 523 336 57 16 chr3 31987515 31987762 -195536816 + MIR SINE MIR 6 262 0 1072 169 12 0 chr3 31988331 31988503 -195536075 + MER20 DNA MER1_type 31 204 -15 988 210 16 0 chr3 31988510 31988696 -195535882 - MER5A DNA MER1_type 0 189 1 230 344 199 23 chr3 31989347 31989603 -195534975 + L3b LINE CR1 1254 1554 -29 202 374 86 22 chr3 31989801 31989940 -195534638 + L2 LINE L2 3121 3268 -4 1673 206 3 0 chr3 31989972 31990278 -195534300 - AluJo SINE Alu -5 307 1 1361 65 0 6 chr3 31990517 31990687 -195533891 - AluY SINE Alu -12 299 131 272 258 43 62 chr3 31990791 31991047 -195533531 + L1M4 LINE L1 3053 3303 -2843 21 0 0 0 chr3 31991085 31991106 -195533472 + AT_rich Low_complexity Low_complexity 1 21 0 1248 271 91 35 chr3 31991113 31991760 -195532818 + L1M4 LINE L1 3289 3971 -2175 2255 197 14 7 chr3 31991779 31992205 -195532373 - MER88 LTR ERVL -35 429 1 251 295 70 39 chr3 31992426 31992555 -195532023 + L2 LINE L2 2932 3064 -208 1004 190 27 0 chr3 31992927 31993111 -195531467 + MER5A DNA MER1_type 1 189 0 2747 10 0 7 chr3 31993150 31993455 -195531123 + AluYb8 SINE Alu 1 303 -15 182 260 14 0 chr3 31994395 31994468 -195530110 + GA-rich Low_complexity Low_complexity 2 75 0 220 297 0 16 chr3 31994732 31994796 -195529782 + (CATATA)n Simple_repeat Simple_repeat 5 67 0 197 65 32 0 chr3 31994800 31994831 -195529747 + (TG)n Simple_repeat Simple_repeat 2 33 0 379 265 31 60 chr3 31995321 31995542 -195529036 + MLT1J LTR MaLR 235 475 -36 303 285 73 33 chr3 31995651 31995802 -195528776 + MIR SINE MIR 20 176 -86 2152 55 3 93 chr3 31995901 31996255 -195528323 + AluY SINE Alu 1 326 0 206 171 24 0 chr3 31996444 31996485 -195528093 + GA-rich Low_complexity Low_complexity 3 44 0 194 179 77 0 chr3 31997789 31997828 -195526750 + MIR SINE MIR 111 152 -56 2121 52 0 4 chr3 31998712 31998962 -195525616 - AluY SINE Alu -13 298 50 22 0 0 0 chr3 32000168 32000190 -195524388 + AT_rich Low_complexity Low_complexity 1 22 0 732 310 22 4 chr3 32001265 32001497 -195523081 - MIR SINE MIR -9 253 18 498 129 0 0 chr3 32002304 32002389 -195522189 + (TCC)n Simple_repeat Simple_repeat 3 87 0 203 0 0 36 chr3 32002391 32002419 -195522159 + (TC)n Simple_repeat Simple_repeat 2 28 0 560 322 98 13 chr3 32002554 32002963 -195521615 - L1MC/D LINE L1 -485 5636 5317 183 80 0 0 chr3 32003133 32003158 -195521420 + (TCCC)n Simple_repeat Simple_repeat 4 28 0 342 174 23 12 chr3 32003169 32003222 -195521356 - L1MB1 LINE L1 -4 6185 6129 1918 150 7 13 chr3 32003222 32003522 -195521056 - AluSx SINE Alu -12 300 3 342 174 23 12 chr3 32003522 32003554 -195521024 - L1MB1 LINE L1 -60 6129 6099 1159 252 79 87 chr3 32003554 32004073 -195520505 + MLT1H LTR MaLR 13 527 -22 1113 262 159 11 chr3 32004223 32004677 -195519901 - LTR33A LTR ERVL 0 523 3 217 354 73 48 chr3 32004810 32005126 -195519452 - L2 LINE L2 -338 2976 2653 477 286 79 11 chr3 32005589 32005767 -195518811 - MER117 DNA MER1_type -7 190 1 326 79 53 0 chr3 32005887 32005963 -195518615 + (TA)n Simple_repeat Simple_repeat 2 81 0 515 197 22 164 chr3 32006609 32006883 -195517695 + MER112 DNA MER1_type 19 253 -7 476 186 62 87 chr3 32007501 32007662 -195516916 + MIR SINE MIR 106 262 0 472 230 36 7 chr3 32007789 32007928 -195516650 + L1MA10 LINE L1 6181 6323 -11 25 31 0 0 chr3 32007940 32007972 -195516606 + AT_rich Low_complexity Low_complexity 1 32 0 437 293 106 34 chr3 32007972 32008483 -195516095 + L1ME3A LINE L1 1687 2260 -4136 1781 251 66 22 chr3 32008621 32009346 -195515232 + L1ME3A LINE L1 2403 3159 -3056 2529 253 74 39 chr3 32009459 32011370 -195513208 + L1ME3A LINE L1 4251 6232 -7 629 219 101 25 chr3 32011764 32012002 -195512576 + MER112 DNA MER1_type 1 256 0 197 125 25 25 chr3 32012014 32012054 -195512524 + L2 LINE L2 3269 3308 -5 494 259 51 28 chr3 32013218 32013434 -195511144 + L1ME4a LINE L1 5859 6079 -42 829 72 0 0 chr3 32014534 32014645 -195509933 - L1P3 LINE L1 -336 5818 5708 2168 91 10 0 chr3 32014645 32014942 -195509636 + L1PA13 LINE L1 5860 6160 -3 232 206 0 109 chr3 32015412 32015504 -195509074 + L1MC4a LINE L1 6964 7045 -763 * 2724 205 28 23 chr3 32015501 32016145 -195508433 + L1MC4 LINE L1 7216 7862 -180 2195 199 30 7 chr3 32016428 32016835 -195507743 - MLT-int LTR MaLR -36 1699 1284 240 181 36 72 chr3 32016897 32016980 -195507598 - MLT-int LTR MaLR -980 755 676 227 279 0 44 chr3 32017039 32017107 -195507471 - MLT1-int LTR MaLR -488 883 819 804 137 123 0 chr3 32017129 32017275 -195507303 - MLT1-int LTR MaLR -1567 168 5 355 280 91 42 chr3 32017752 32017895 -195506683 - MIR3 SINE MIR -15 193 44 243 79 0 0 chr3 32017899 32017937 -195506641 + (A)n Simple_repeat Simple_repeat 1 38 0 242 312 18 0 chr3 32018249 32018358 -195506220 - L1MC/D LINE L1 -2000 5808 5698 803 266 39 13 chr3 32018437 32018670 -195505908 + L2 LINE L2 3075 3313 0 469 373 78 23 chr3 32018675 32019243 -195505335 - L1MC/D LINE L1 -815 5331 4733 2566 226 11 16 chr3 32019571 32020120 -195504458 - MLT1H1 LTR MaLR 0 555 10 326 281 135 17 chr3 32020686 32020864 -195503714 - MIR SINE MIR -1 261 63 474 214 0 0 chr3 32020883 32020972 -195503606 + MER5A DNA MER1_type 10 98 -91 184 233 0 0 chr3 32021042 32021085 -195503493 - MER5B DNA MER1_type -3 175 133 610 219 22 51 chr3 32021120 32021257 -195503321 - MER5B DNA MER1_type -45 133 1 505 169 0 22 chr3 32021446 32021535 -195503043 - MER5B DNA MER1_type -90 88 2 547 259 116 11 chr3 32021535 32021724 -195502854 - Charlie8 DNA MER1_type -2185 232 24 332 237 11 32 chr3 32022572 32022665 -195501913 - MIR SINE MIR 0 262 172 * 1189 246 126 53 chr3 32022649 32023255 -195501323 + L2 LINE L2 2667 3313 0 435 250 62 14 chr3 32023253 32023397 -195501181 - MIR SINE MIR -65 197 47 * 195 235 0 0 chr3 32024921 32024955 -195499623 - L2 LINE L2 -17 3255 3222 582 312 74 2 chr3 32025007 32025197 -195499381 - MIR SINE MIR -55 207 7 2203 105 0 14 chr3 32027173 32027469 -195497109 - AluSc SINE Alu -12 297 6 188 324 176 19 chr3 32027610 32027718 -195496860 - L2 LINE L2 -4 3309 3185 23 0 0 0 chr3 32029411 32029434 -195495144 + AT_rich Low_complexity Low_complexity 1 23 0 617 105 0 0 chr3 32029434 32029520 -195495058 - FLAM_A SINE Alu -20 122 37 229 325 159 12 chr3 32029638 32029801 -195494777 - MIR SINE MIR -27 235 49 2491 219 36 16 chr3 32030048 32030688 -195493890 - MER97c DNA MER1_type? -437 653 1 538 331 22 6 chr3 32031344 32031525 -195493053 - MIR SINE MIR -76 186 3 21 57 0 0 chr3 32031829 32031864 -195492714 + AT_rich Low_complexity Low_complexity 1 35 0 572 274 8 0 chr3 32032601 32032725 -195491853 + MER63A DNA MER1_type 51 175 -35 270 314 20 29 chr3 32033086 32033188 -195491390 - MIR3 SINE MIR -54 154 54 2752 119 16 5 chr3 32034067 32034496 -195490082 + MER57B LTR ERV1 1 434 0 41 58 0 0 chr3 32035665 32035734 -195488844 + AT_rich Low_complexity Low_complexity 1 69 0 191 98 0 103 chr3 32035737 32035921 -195488657 + (TATAA)n Simple_repeat Simple_repeat 5 169 0 25 31 0 0 chr3 32035931 32035963 -195488615 + AT_rich Low_complexity Low_complexity 1 32 0 198 311 54 0 chr3 32036089 32036163 -195488415 - MIR SINE MIR -82 180 103 216 0 0 0 chr3 32036179 32036203 -195488375 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 619 325 83 20 chr3 32036566 32036914 -195487664 + L1MEc LINE L1 92 461 -5935 324 273 196 59 chr3 32037287 32037332 -195487246 + MLT1K LTR MaLR 2 39 -549 1477 167 4 30 chr3 32037332 32037595 -195486983 - AluJb SINE Alu -16 296 41 324 273 196 59 chr3 32037595 32037886 -195486692 + MLT1K LTR MaLR 39 384 -204 235 260 181 8 chr3 32038115 32038242 -195486336 + MIR3 SINE MIR 57 205 -3 341 265 10 20 chr3 32039351 32039453 -195485125 - MIR SINE MIR -34 228 128 207 208 21 0 chr3 32039511 32039559 -195485019 + (CATATA)n Simple_repeat Simple_repeat 4 52 0 21 36 0 0 chr3 32039631 32039659 -195484919 + AT_rich Low_complexity Low_complexity 1 28 0 258 284 34 0 chr3 32040469 32040557 -195484021 + MER94 DNA DNA 41 131 -3 283 362 83 24 chr3 32040587 32040841 -195483737 + L2 LINE L2 2656 2924 -390 298 242 89 24 chr3 32041084 32041208 -195483370 - MIR SINE MIR -50 212 81 2397 97 0 0 chr3 32041225 32041523 -195483055 + AluSc SINE Alu 1 298 -11 188 273 41 103 chr3 32042826 32043020 -195481558 + L2 LINE L2 2494 2675 -639 * 340 405 136 14 chr3 32042991 32043337 -195481241 + L2 LINE L2 2847 3234 -38 243 0 0 0 chr3 32043341 32043368 -195481210 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 212 100 25 0 chr3 32043412 32043452 -195481126 + (TCCA)n Simple_repeat Simple_repeat 4 44 0 40 0 0 0 chr3 32044380 32044420 -195480158 + AT_rich Low_complexity Low_complexity 1 40 0 303 329 68 4 chr3 32044778 32045015 -195479563 - L1ME4a LINE L1 -237 5884 5633 598 64 11 43 chr3 32045440 32045534 -195479044 + L1PA11 LINE L1 6084 6174 0 369 298 48 0 chr3 32046322 32046446 -195478132 + L2 LINE L2 2929 3058 -255 318 250 60 69 chr3 32046570 32046786 -195477792 + MER112 DNA MER1_type 33 246 -14 204 281 260 0 chr3 32046840 32046936 -195477642 + L2 LINE L2 3193 3313 0 1075 191 5 0 chr3 32047801 32047989 -195476589 - MER5A DNA MER1_type 0 189 1 1135 202 9 5 chr3 32047997 32048215 -195476363 + MER20 DNA MER1_type 1 219 0 765 311 79 65 chr3 32048884 32049738 -195474840 + L2 LINE L2 2358 3245 -27 1229 292 83 12 chr3 32050010 32050489 -195474089 - L2 LINE L2 -408 2906 2394 186 252 217 17 chr3 32050491 32050606 -195473972 + L2 LINE L2 2991 3128 -144 335 315 109 11 chr3 32051418 32051619 -195472959 - MIR SINE MIR -40 222 7 181 330 117 19 chr3 32051660 32051763 -195472815 - L3 LINE CR1 -160 1417 1305 416 297 68 40 chr3 32051940 32052162 -195472416 - L3 LINE CR1 -274 1303 1076 21 0 0 0 chr3 32053659 32053680 -195470898 + AT_rich Low_complexity Low_complexity 1 21 0 193 244 12 12 chr3 32053688 32053770 -195470808 + CT-rich Low_complexity Low_complexity 3 84 0 240 318 173 17 chr3 32054233 32054412 -195470166 + L2 LINE L2 2993 3199 -73 370 258 167 0 chr3 32054541 32054673 -195469905 + MIR SINE MIR 84 237 -25 225 83 0 0 chr3 32054957 32054993 -195469585 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 1465 196 0 8 chr3 32055119 32055379 -195469199 + AluJo SINE Alu 1 258 -54 195 42 0 0 chr3 32055404 32055428 -195469150 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 435 287 103 35 chr3 32055856 32056030 -195468548 + L2 LINE L2 3120 3305 -8 2201 232 76 16 chr3 32056378 32057050 -195467528 + L1ME3 LINE L1 5421 6132 -30 255 224 78 9 chr3 32058739 32058855 -195465723 - MER113 DNA MER1_type? -307 214 91 1154 171 68 62 chr3 32059074 32059396 -195465182 + MER33 DNA MER1_type 1 324 0 616 232 161 0 chr3 32060789 32060944 -195463634 - MER5A DNA MER1_type -6 183 4 2138 128 0 7 chr3 32062749 32063039 -195461539 + AluSx SINE Alu 1 288 -24 2286 119 0 0 chr3 32063577 32063880 -195460698 - AluSx SINE Alu -9 303 1 192 311 16 33 chr3 32063916 32063977 -195460601 + L2 LINE L2 3201 3260 -12 2286 113 0 0 chr3 32064101 32064403 -195460175 - AluSg SINE Alu -4 306 5 827 273 73 55 chr3 32064855 32065199 -195459379 - L2 LINE L2 -4 3309 2960 369 281 201 35 chr3 32065266 32065665 -195458913 + L1ME LINE L1 5255 5600 -521 712 335 46 44 chr3 32065727 32066231 -195458347 + L2 LINE L2 2283 2787 -527 2097 136 0 3 chr3 32066644 32066945 -195457633 - AluSx SINE Alu -12 300 1 463 167 0 0 chr3 32067203 32067275 -195457303 - FLAM SINE Alu -29 114 43 631 204 8 8 chr3 32067538 32067670 -195456908 - MER119 DNA MER1_type 0 583 452 343 244 96 17 chr3 32067673 32067788 -195456790 - MER119 DNA MER1_type -455 128 5 6594 55 30 1 chr3 32068278 32069251 -195455327 + L1P LINE L1 3208 4208 -1938 307 349 94 7 chr3 32070073 32070222 -195454356 + MIR3 SINE MIR 30 191 -17 1482 288 178 31 chr3 32070894 32072198 -195452380 - L2 LINE L2 -8 3305 1817 389 276 92 32 chr3 32072791 32072976 -195451602 + L2 LINE L2 3071 3266 -6 22 35 0 0 chr3 32073221 32073250 -195451328 + AT_rich Low_complexity Low_complexity 1 29 0 1749 100 0 58 chr3 32073861 32074122 -195450456 - AluY SINE Alu -65 246 1 353 267 61 8 chr3 32074426 32074557 -195450021 + Charlie8 DNA MER1_type 37 174 -2243 724 183 120 40 chr3 32124919 32125094 -195399484 + MER5A DNA MER1_type 1 189 0 459 267 148 29 chr3 32125474 32125826 -195398752 - L1M4 LINE L1 -319 5802 5446 471 280 19 55 chr3 32126242 32126408 -195398170 + MIR SINE MIR 14 183 -67 709 269 39 0 chr3 32126414 32126596 -195397982 + MIR SINE MIR 8 196 -66 222 150 0 0 chr3 32126598 32126638 -195397940 + (TCTA)n Simple_repeat Simple_repeat 4 43 0 284 208 26 39 chr3 32128725 32128802 -195395776 - L2 LINE L2 -6 3307 3232 184 170 62 9 chr3 32129745 32129857 -195394721 + (TA)n Simple_repeat Simple_repeat 2 119 0 554 256 249 7 chr3 32129871 32130176 -195394402 + L3 LINE CR1 429 807 -770 851 109 0 47 chr3 32130188 32130316 -195394262 - FLAM_C SINE Alu -19 124 3 216 281 49 0 chr3 32130320 32130402 -195394176 + L3 LINE CR1 796 881 -696 400 282 14 21 chr3 32130868 32131010 -195393568 + L1ME3 LINE L1 4881 5021 -1125 279 0 0 0 chr3 32131766 32131797 -195392781 + (CA)n Simple_repeat Simple_repeat 2 32 0 848 266 84 62 chr3 32131823 32132439 -195392139 + L1ME3 LINE L1 5320 5949 -213 469 333 50 50 chr3 32132940 32133201 -195391377 + L3 LINE CR1 1011 1271 -306 589 247 7 39 chr3 32133572 32133673 -195390905 + MIR SINE MIR 63 159 -103 2389 183 49 10 chr3 32133673 32134159 -195390419 + MLT1D LTR MaLR 1 505 0 589 247 7 39 chr3 32134159 32134211 -195390367 + MIR SINE MIR 159 211 -51 186 103 0 0 chr3 32136969 32136998 -195387580 + (CA)n Simple_repeat Simple_repeat 1 29 0 252 127 45 36 chr3 32137551 32137661 -195386917 + (TA)n Simple_repeat Simple_repeat 1 111 0 2862 132 48 2 chr3 32137664 32138163 -195386415 + L1MA4 LINE L1 5774 6295 -5 27 0 0 0 chr3 32138580 32138607 -195385971 + AT_rich Low_complexity Low_complexity 1 27 0 351 0 0 0 chr3 32139001 32139040 -195385538 + (TG)n Simple_repeat Simple_repeat 1 39 0 988 229 76 89 chr3 32139380 32139843 -195384735 - LTR16A1 LTR ERVL 0 457 1 970 341 152 34 chr3 32140107 32140895 -195383683 - L3 LINE CR1 -104 1473 593 21 0 0 0 chr3 32141024 32141045 -195383533 + AT_rich Low_complexity Low_complexity 1 21 0 1378 265 64 12 chr3 32141349 32141879 -195382699 - MLT1E LTR MaLR -3 590 1 434 238 18 39 chr3 32142728 32142896 -195381682 - MIR SINE MIR 0 262 44 2459 68 7 3 chr3 32143045 32143355 -195381223 + AluSp SINE Alu 1 311 -2 2100 118 7 3 chr3 32143404 32143692 -195380886 + AluSc SINE Alu 2 290 -19 280 313 72 4 chr3 32143939 32144204 -195380374 + L1P LINE L1 3604 3886 -2260 451 387 22 9 chr3 32144233 32144463 -195380115 - MIR SINE MIR -27 235 3 790 310 152 49 chr3 32144496 32145107 -195379471 + L1ME4a LINE L1 3914 4461 -1685 1804 116 76 4 chr3 32145107 32145384 -195379194 - AluSq SINE Alu -14 299 3 790 310 152 49 chr3 32145384 32145788 -195378790 + L1ME4a LINE L1 4461 5033 -1113 27 0 0 0 chr3 32146096 32146123 -195378455 + AT_rich Low_complexity Low_complexity 1 27 0 339 293 68 0 chr3 32146194 32146327 -195378251 + L1ME4a LINE L1 5576 5717 -404 680 238 136 8 chr3 32146360 32146595 -195377983 + L1ME4a LINE L1 5781 6045 -76 811 234 42 5 chr3 32147261 32147453 -195377125 + MLT1D LTR MaLR 2 200 -305 22 0 0 0 chr3 32147598 32147620 -195376958 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 32147689 32147711 -195376867 + AT_rich Low_complexity Low_complexity 1 22 0 263 175 18 0 chr3 32150474 32150531 -195374047 + GA-rich Low_complexity Low_complexity 4 61 0 24 53 0 0 chr3 32151478 32151516 -195373062 + AT_rich Low_complexity Low_complexity 1 38 0 2368 88 0 10 chr3 32151728 32152033 -195372545 - AluSg SINE Alu -8 302 1 1065 209 17 13 chr3 32152629 32152863 -195371715 - MER96B DNA MER1_type? -182 235 1 450 273 62 14 chr3 32153459 32153668 -195370910 + L2 LINE L2 2298 2516 -798 727 282 73 29 chr3 32153690 32153935 -195370643 - MIR SINE MIR -2 260 5 * 808 337 35 37 chr3 32153930 32154387 -195370191 + L2 LINE L2 2520 2975 -339 373 163 146 10 chr3 32154535 32154650 -195369928 + L1MB8 LINE L1 5208 5335 -811 1725 171 28 36 chr3 32154650 32155037 -195369541 + L1MB8 LINE L1 5795 6178 0 194 311 54 81 chr3 32155241 32155389 -195369189 - MIR3 SINE MIR -1 207 64 252 0 0 0 chr3 32155603 32155631 -195368947 + (T)n Simple_repeat Simple_repeat 1 28 0 1782 169 0 20 chr3 32156542 32156844 -195367734 + AluJo SINE Alu 1 296 -16 202 188 0 62 chr3 32157080 32157160 -195367418 + A-rich Low_complexity Low_complexity 1 75 0 481 296 88 22 chr3 32157587 32157813 -195366765 + MER102a DNA MER1_type 74 314 -16 472 215 222 0 chr3 32158444 32158588 -195365990 - MER5A DNA MER1_type 0 189 14 33 25 0 0 chr3 32159420 32159460 -195365118 + AT_rich Low_complexity Low_complexity 1 40 0 6488 60 18 13 chr3 32159460 32160328 -195364250 - L1PA7 LINE L1 -7 6147 5275 678 315 22 9 chr3 32161688 32161920 -195362658 + MIR SINE MIR 28 262 0 506 283 163 0 chr3 32162336 32162594 -195361984 + L1ME4a LINE L1 5740 6039 -82 343 266 35 18 chr3 32162757 32162870 -195361708 + MIR3 SINE MIR 90 204 -4 1540 125 73 62 chr3 32163763 32164052 -195360526 - AluJo SINE Alu -20 292 1 2597 48 7 0 chr3 32164459 32164768 -195359810 + AluY SINE Alu 1 311 0 454 316 24 24 chr3 32164888 32165225 -195359353 - L1MEc LINE L1 -3776 2463 2144 350 308 66 25 chr3 32165534 32165820 -195358758 - HAL1 LINE L1 -744 1763 1466 1919 149 0 3 chr3 32165909 32166198 -195358380 - AluSx SINE Alu -24 288 1 657 234 89 40 chr3 32166343 32166591 -195357987 - HAL1 LINE L1 -2 2505 2246 253 234 31 88 chr3 32166628 32166820 -195357758 - HAL1 LINE L1 -1211 1296 1116 * 633 282 66 12 chr3 32166819 32167060 -195357518 - HAL1 LINE L1 -1749 758 505 14943 131 21 3 chr3 32167061 32169373 -195355205 - Tigger1 DNA MER2_type 0 2418 65 260 172 0 241 chr3 32169373 32169489 -195355089 - Tigger1 DNA MER2_type -2329 89 2 210 356 33 11 chr3 32169540 32169630 -195354948 + L2 LINE L2 2970 3061 -211 275 335 77 11 chr3 32170670 32170846 -195353732 - MIR SINE MIR -29 233 46 760 246 209 5 chr3 32170846 32171057 -195353521 + MIR SINE MIR 3 256 -6 2253 100 0 0 chr3 32171122 32171412 -195353166 - AluSx SINE Alu -22 290 1 378 299 220 4 chr3 32171431 32171672 -195352906 - L3 LINE CR1 -296 1281 989 936 182 6 0 chr3 32171695 32171854 -195352724 + MER5A DNA MER1_type 29 188 -1 710 337 57 12 chr3 32171993 32172325 -195352253 - L3 LINE CR1 -774 803 457 281 284 119 72 chr3 32172524 32172718 -195351860 - MIR SINE MIR -55 207 5 39 38 0 0 chr3 32173379 32173432 -195351146 + AT_rich Low_complexity Low_complexity 1 53 0 520 47 0 0 chr3 32173818 32173882 -195350696 - L1P LINE L1 -748 5424 5361 5597 50 3 30 chr3 32173882 32174614 -195349964 + L1PA7 LINE L1 5436 6151 -3 484 251 80 43 chr3 32174846 32175033 -195349545 - MER117 DNA MER1_type 0 197 4 28 71 0 0 chr3 32175727 32175783 -195348795 + AT_rich Low_complexity Low_complexity 1 56 0 212 186 23 0 chr3 32175958 32176001 -195348577 + (TATG)n Simple_repeat Simple_repeat 3 46 0 209 30 61 0 chr3 32176026 32176059 -195348519 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 325 225 134 82 chr3 32177519 32177585 -195346993 + MER112 DNA MER1_type 17 78 -182 297 0 0 0 chr3 32177585 32177618 -195346960 + (TG)n Simple_repeat Simple_repeat 1 33 0 325 225 134 82 chr3 32177618 32177782 -195346796 + MER112 DNA MER1_type 78 259 -1 531 220 164 19 chr3 32177912 32178071 -195346507 - MER5A DNA MER1_type -1 188 7 21 36 0 0 chr3 32178723 32178751 -195345827 + AT_rich Low_complexity Low_complexity 1 28 0 320 217 142 38 chr3 32178786 32178892 -195345686 + L2 LINE L2 3156 3272 0 226 363 0 0 chr3 32179050 32179130 -195345448 + GA-rich Low_complexity Low_complexity 2 81 0 856 171 4 152 chr3 32179355 32179513 -195345065 + MER20 DNA MER1_type 1 109 -110 2248 63 0 14 chr3 32179513 32179827 -195344751 + AluY SINE Alu 1 310 0 856 171 4 152 chr3 32179827 32179924 -195344654 + MER20 DNA MER1_type 109 219 0 1355 272 87 13 chr3 32180262 32180710 -195343868 + LTR16C LTR ERVL 5 485 -6 267 79 0 0 chr3 32181716 32181754 -195342824 + (T)n Simple_repeat Simple_repeat 1 38 0 188 262 0 0 chr3 32182000 32182042 -195342536 - L2 LINE L2 -88 3225 3184 21 0 0 0 chr3 32182332 32182353 -195342225 + AT_rich Low_complexity Low_complexity 1 21 0 586 338 29 0 chr3 32182728 32182932 -195341646 - MIR SINE MIR -12 250 41 252 0 0 0 chr3 32182980 32183008 -195341570 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 402 100 0 0 chr3 32183010 32183070 -195341508 + (TC)n Simple_repeat Simple_repeat 1 60 0 28 0 0 0 chr3 32183558 32183586 -195340992 + AT_rich Low_complexity Low_complexity 1 28 0 665 224 74 102 chr3 32184272 32184731 -195339847 + MLT1J1 LTR MaLR 1 446 0 1127 164 157 18 chr3 32184830 32185110 -195339468 + MER33 DNA MER1_type 6 324 0 986 196 16 0 chr3 32185135 32185319 -195339259 + MER58A DNA MER1_type 38 224 0 186 71 0 0 chr3 32185455 32185483 -195339095 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 264 351 170 25 chr3 32185923 32186276 -195338302 + L2 LINE L2 2574 2977 -337 190 279 0 0 chr3 32186415 32186458 -195338120 - MIR3 SINE MIR -45 163 121 1133 185 15 10 chr3 32186540 32186745 -195337833 + MER20 DNA MER1_type 1 206 -13 261 57 0 0 chr3 32187832 32187867 -195336711 + (CA)n Simple_repeat Simple_repeat 2 36 0 283 237 214 23 chr3 32187877 32188008 -195336570 - MER103 DNA DNA -7 159 4 21 0 0 0 chr3 32189388 32189409 -195335169 + AT_rich Low_complexity Low_complexity 1 21 0 1981 120 42 0 chr3 32189478 32189761 -195334817 + AluSc SINE Alu 9 303 -6 230 196 89 0 chr3 32190659 32190715 -195333863 + L2 LINE L2 3251 3311 -2 304 281 126 22 chr3 32190950 32191085 -195333493 - L2 LINE L2 0 3272 3124 647 303 8 90 chr3 32192652 32193008 -195331570 - L2 LINE L2 0 3313 2987 465 308 104 102 chr3 32195480 32196086 -195328492 + L1M2 LINE L1 445 1323 -5526 857 112 20 97 chr3 32198192 32198388 -195326190 - MER96B DNA MER1_type? -236 181 1 223 355 0 13 chr3 32198521 32198597 -195325981 - L2 LINE L2 -213 3059 2985 2739 196 69 44 chr3 32198857 32199510 -195325068 - MER45B DNA AcHobo -371 669 1 383 315 82 27 chr3 32199608 32199792 -195324786 - MIR SINE MIR -4 258 65 289 317 118 27 chr3 32200028 32200214 -195324364 + MLT1J2 LTR MaLR 241 443 -7 1344 217 19 5 chr3 32200362 32200790 -195323788 - L1ME3 LINE L1 0 6162 5617 699 256 15 15 chr3 32201755 32201950 -195322628 + MIR SINE MIR 53 247 -15 182 269 15 138 chr3 32202054 32202184 -195322394 - L2 LINE L2 -2 3311 3198 201 346 84 0 chr3 32202574 32202681 -195321897 + MIR3 SINE MIR 79 194 -14 29 28 0 0 chr3 32202980 32203016 -195321562 + AT_rich Low_complexity Low_complexity 1 36 0 212 322 130 55 chr3 32203478 32203624 -195320954 + MIR SINE MIR 100 256 -6 197 250 28 74 chr3 32203899 32204007 -195320571 + MIR SINE MIR 104 206 -56 851 204 72 152 chr3 32204479 32204667 -195319911 + L2 LINE L2 2889 3091 -222 963 202 5 5 chr3 32204667 32204855 -195319723 + MER5A DNA MER1_type 1 188 -1 851 204 72 152 chr3 32204855 32205126 -195319452 + L2 LINE L2 3091 3311 -2 330 26 0 0 chr3 32205693 32205732 -195318846 + (TG)n Simple_repeat Simple_repeat 2 40 0 831 277 138 43 chr3 32205970 32206435 -195318143 - MLT1H LTR MaLR -2 547 39 213 378 90 0 chr3 32206901 32207012 -195317566 - L2 LINE L2 -16 3256 3136 290 82 9 0 chr3 32207025 32207071 -195317507 + Alu SINE Alu 252 291 -11 425 76 15 0 chr3 32207085 32207151 -195317427 + (TA)n Simple_repeat Simple_repeat 1 67 0 245 333 95 9 chr3 32207152 32207257 -195317321 - L2 LINE L2 -186 3127 3014 551 189 39 18 chr3 32207274 32207560 -195317018 + (TA)n Simple_repeat Simple_repeat 1 292 0 235 94 0 0 chr3 32207561 32207593 -195316985 + (CA)n Simple_repeat Simple_repeat 2 33 0 947 156 47 47 chr3 32208281 32208492 -195316086 - MER20 DNA MER1_type -3 216 6 430 235 59 0 chr3 32210435 32210537 -195314041 - L3 LINE CR1 -910 667 560 334 325 43 0 chr3 32210564 32210681 -195313897 - L3 LINE CR1 -1129 448 327 1059 160 16 21 chr3 32211046 32211233 -195313345 + MER5A DNA MER1_type 4 189 0 419 265 125 45 chr3 32211324 32211524 -195313054 - MIR SINE MIR -2 260 45 2637 29 0 13 chr3 32211827 32212142 -195312436 - AluYa5 SINE Alu 0 311 1 579 255 153 0 chr3 32212241 32212398 -195312180 + MER5A DNA MER1_type 9 189 0 221 259 17 17 chr3 32212416 32212474 -195312104 - MIR SINE MIR -76 132 75 686 288 9 40 chr3 32212563 32212789 -195311789 - MIR SINE MIR -15 247 29 2253 105 16 3 chr3 32212932 32213237 -195311341 + AluSx SINE Alu 1 309 -3 306 0 0 0 chr3 32214221 32214255 -195310323 + (CA)n Simple_repeat Simple_repeat 1 34 0 182 365 21 10 chr3 32216255 32216351 -195308227 - MIR3 SINE MIR -7 201 105 662 264 119 57 chr3 32216427 32216881 -195307697 + MLT1J LTR MaLR 19 500 -11 244 267 0 0 chr3 32216894 32216954 -195307624 + L2 LINE L2 3240 3299 -14 300 325 58 34 chr3 32216958 32217164 -195307414 + L2 LINE L2 2448 2658 -656 575 299 0 0 chr3 32217403 32217537 -195307041 + L2 LINE L2 3180 3313 0 233 167 19 0 chr3 32217597 32217651 -195306927 + GA-rich Low_complexity Low_complexity 2 56 0 523 198 83 0 chr3 32217847 32217968 -195306610 + Charlie1 DNA MER1_type 2343 2473 -288 956 217 64 20 chr3 32217968 32218294 -195306284 + MSTD LTR MaLR 2 371 -25 845 152 15 131 chr3 32218303 32218632 -195305946 + Charlie1 DNA MER1_type 2471 2761 0 415 295 110 20 chr3 32218715 32218915 -195305663 + MIR SINE MIR 20 237 -25 425 234 45 0 chr3 32219015 32219126 -195305452 + MER63 DNA MER1_type 1 742 -94 731 200 41 0 chr3 32219544 32219689 -195304889 + MER5A DNA MER1_type 1 151 -38 723 239 93 11 chr3 32219825 32220187 -195304391 + LTR16A1 LTR ERVL 4 456 -1 459 364 31 5 chr3 32220187 32220382 -195304196 + MIR SINE MIR 27 226 -36 352 262 194 30 chr3 32220863 32221126 -195303452 + L2 LINE L2 2994 3299 -14 2039 236 43 7 chr3 32221130 32221714 -195302864 + L1ME3A LINE L1 5511 6115 -55 350 316 123 74 chr3 32221902 32222494 -195302084 - L1M2 LINE L1 -5456 1393 773 225 290 183 0 chr3 32223557 32223650 -195300928 + MIR3 SINE MIR 65 174 -34 661 274 107 31 chr3 32225776 32226093 -195298485 - MLT1J2 LTR MaLR -109 341 1 583 269 91 10 chr3 32226121 32226318 -195298260 - MIR SINE MIR -1 261 49 246 128 0 0 chr3 32227265 32227304 -195297274 + (TA)n Simple_repeat Simple_repeat 1 39 0 911 217 31 61 chr3 32228007 32228334 -195296244 + L1ME3A LINE L1 5854 6170 0 238 257 248 0 chr3 32229019 32229124 -195295454 - L2 LINE L2 -1 3271 3141 261 159 0 0 chr3 32229129 32229192 -195295386 + CT-rich Low_complexity Low_complexity 2 64 0 351 0 0 0 chr3 32229192 32229231 -195295347 + (CA)n Simple_repeat Simple_repeat 2 40 0 256 341 0 41 chr3 32229231 32229354 -195295224 - L2 LINE L2 -27 3286 3169 29 47 0 0 chr3 32229374 32229417 -195295161 + AT_rich Low_complexity Low_complexity 1 43 0 427 215 0 0 chr3 32229430 32229523 -195295055 - L1MEc LINE L1 -3896 2748 2656 1747 217 303 6 chr3 32229537 32230316 -195294262 - L1MC4 LINE L1 -206 7836 6827 1180 257 39 52 chr3 32230406 32231027 -195293551 - L1MEc LINE L1 -4577 2248 1485 662 313 80 9 chr3 32231123 32231462 -195293116 - L1MEc LINE L1 -5935 890 528 264 304 10 20 chr3 32231562 32231664 -195292914 - L2 LINE L2 -151 3162 3062 239 323 57 32 chr3 32231738 32231862 -195292716 - L2 LINE L2 -191 3081 2955 873 194 12 12 chr3 32231898 32232068 -195292510 - AluJb SINE Alu -23 289 120 255 321 45 27 chr3 32232208 32232320 -195292258 - L2 LINE L2 -486 2828 2715 1861 154 10 3 chr3 32232496 32232789 -195291789 + AluJb SINE Alu 2 296 -16 184 135 162 0 chr3 32233167 32233204 -195291374 - L2 LINE L2 -8 3264 3222 1718 145 83 26 chr3 32233612 32233963 -195290615 + THE1C LTR MaLR 3 373 -2 1077 242 56 49 chr3 32234021 32234430 -195290148 + LTR16A1 LTR ERVL 13 424 -33 304 270 81 9 chr3 32234710 32234821 -195289757 - L2 LINE L2 -971 2343 2225 258 287 68 31 chr3 32235015 32235308 -195289270 + L1MC/D LINE L1 4309 4612 -1534 2126 119 7 3 chr3 32235367 32235669 -195288909 + AluSg SINE Alu 1 303 -7 282 261 116 0 chr3 32236145 32236283 -195288295 + L1MC/D LINE L1 5313 5466 -2342 610 336 89 42 chr3 32236462 32237248 -195287330 - L1M4 LINE L1 -1086 5060 4238 720 256 19 0 chr3 32237776 32237936 -195286642 - FRAM SINE Alu -3 163 1 316 324 64 20 chr3 32238000 32238204 -195286374 - L1M4 LINE L1 -2368 3778 3566 252 0 0 0 chr3 32240533 32240561 -195284017 + (T)n Simple_repeat Simple_repeat 1 28 0 339 246 47 76 chr3 32241109 32241280 -195283298 - MIR SINE MIR -12 250 85 238 214 43 29 chr3 32241372 32241442 -195283136 + MLT1J1 LTR MaLR 71 141 -305 888 232 16 5 chr3 32241471 32241661 -195282917 - MER58A DNA MER1_type -9 215 24 1221 183 14 5 chr3 32241672 32241885 -195282693 + MER8 DNA MER2_type 4 218 -21 214 339 0 0 chr3 32242026 32242088 -195282490 + L2 LINE L2 2684 2745 -569 232 226 38 0 chr3 32243015 32243068 -195281510 + GA-rich Low_complexity Low_complexity 2 56 0 * 241 276 23 0 chr3 32243052 32243139 -195281439 - L1ME4a LINE L1 -68 6053 5965 302 330 20 0 chr3 32243342 32243442 -195281136 - MIR SINE MIR -142 120 19 682 250 119 6 chr3 32243467 32243627 -195280951 - MER5B DNA MER1_type 0 178 1 2658 121 18 20 chr3 32243994 32244439 -195280139 - MER65A LTR ERV1 0 445 2 24 32 0 0 chr3 32245003 32245034 -195279544 + AT_rich Low_complexity Low_complexity 1 31 0 1354 221 132 10 chr3 32245275 32245677 -195278901 + MLT1C LTR MaLR 17 467 0 25 51 0 0 chr3 32245967 32246006 -195278572 + AT_rich Low_complexity Low_complexity 1 39 0 654 275 11 19 chr3 32249294 32249498 -195275080 - MIR SINE MIR -32 230 31 435 199 44 44 chr3 32249557 32249738 -195274840 - HAL1 LINE L1 -1457 1050 870 411 266 98 14 chr3 32249741 32249884 -195274694 + MER5B DNA MER1_type 5 159 -19 252 207 0 69 chr3 32249893 32249951 -195274627 - HAL1 LINE L1 -1658 849 796 * 1941 231 95 58 chr3 32249948 32250760 -195273818 + L1M4 LINE L1 3513 4354 -1792 1684 299 81 16 chr3 32250747 32251435 -195273143 - HAL1 LINE L1 -1697 810 78 * 431 298 8 8 chr3 32251867 32251991 -195272587 - L2 LINE L2 -9 3304 3181 1664 163 59 17 chr3 32252671 32252960 -195271618 + AluJo SINE Alu 1 301 -11 4116 162 18 42 chr3 32253136 32254007 -195270571 - L1MB8 LINE L1 0 6178 5329 3066 230 11 15 chr3 32254008 32254821 -195269757 - L1MB8 LINE L1 -1071 5075 4266 652 269 28 0 chr3 32254844 32255026 -195269552 - L1ME4a LINE L1 -392 5770 5584 2327 92 0 3 chr3 32256957 32257262 -195267316 + AluSc SINE Alu 1 304 -5 917 255 33 0 chr3 32257998 32258210 -195266368 + MER20 DNA MER1_type 1 219 0 1580 159 85 0 chr3 32258572 32258723 -195265855 - AluSx SINE Alu -5 307 170 279 0 0 0 chr3 32258723 32258754 -195265824 + (TTTA)n Simple_repeat Simple_repeat 1 31 0 1580 159 85 0 chr3 32258754 32258885 -195265693 - AluSx SINE Alu -142 170 1 627 60 24 0 chr3 32261687 32261811 -195262767 - AluSc SINE Alu 0 319 194 199 343 103 29 chr3 32261933 32262108 -195262470 + MIR SINE MIR 75 262 0 873 152 0 51 chr3 32262557 32262715 -195261863 + FRAM SINE Alu 13 162 -14 1256 250 114 45 chr3 32263169 32263642 -195260936 - MLT1H1 LTR MaLR -9 546 47 419 309 44 0 chr3 32264164 32264300 -195260278 + L2 LINE L2 2611 2752 -562 2824 219 16 19 chr3 32264322 32265006 -195259572 - L1MA9 LINE L1 -38 6274 5593 429 198 91 8 chr3 32265006 32265127 -195259451 + L1M2 LINE L1 4321 4451 -1695 1090 180 72 0 chr3 32265128 32265350 -195259228 - Tigger5 DNA MER2_type -1 2322 2085 388 186 0 0 chr3 32265371 32265430 -195259148 - Tigger5 DNA MER2_type -2261 62 4 4045 159 33 36 chr3 32265431 32266617 -195257961 + L1M2 LINE L1 4448 5632 -680 323 226 119 0 chr3 32266619 32266703 -195257875 + L2 LINE L2 2749 2842 -472 476 223 78 10 chr3 32266705 32266808 -195257770 - L2 LINE L2 0 3313 3204 1252 242 89 28 chr3 32266815 32267240 -195257338 + L2 LINE L2 2859 3309 -4 37555 80 10 19 chr3 32267286 32273444 -195251134 + L1PA6 LINE L1 55 6151 -3 2134 144 62 35 chr3 32274167 32274590 -195249988 + Tigger2a DNA MER2_type 1 434 0 1089 214 13 66 chr3 32274676 32274759 -195249819 + MER58B DNA MER1_type 39 125 -2295 2233 113 7 7 chr3 32274759 32275068 -195249510 - AluSx SINE Alu -3 309 1 1089 214 13 66 chr3 32275068 32275206 -195249372 + MER58B DNA MER1_type 125 241 -2179 2383 48 41 0 chr3 32275206 32275497 -195249081 + AluY SINE Alu 1 303 -8 1089 214 13 66 chr3 32275497 32275591 -195248987 + MER58B DNA MER1_type 241 338 -3 190 384 26 47 chr3 32275604 32275794 -195248784 + MER5A DNA MER1_type 4 189 0 22 0 0 0 chr3 32276474 32276496 -195248082 + AT_rich Low_complexity Low_complexity 1 22 0 2264 78 11 0 chr3 32276545 32276829 -195247749 - AluY SINE Alu -17 294 8 4546 169 15 36 chr3 32276878 32277269 -195247309 - L1MA7 LINE L1 -64 6227 5829 2250 128 0 0 chr3 32277269 32277581 -195246997 - AluSx SINE Alu 0 312 1 4546 169 15 36 chr3 32277581 32278109 -195246469 - L1MA7 LINE L1 -462 5829 5327 1155 219 27 19 chr3 32278105 32278471 -195246107 - L1MDb LINE L1 -3966 2440 2072 * 582 252 14 23 chr3 32278486 32278700 -195245878 - L1MDb LINE L1 -4385 2021 1810 * 6395 211 30 33 chr3 32278681 32280303 -195244275 - L1MDb LINE L1 -4799 1607 6 1967 218 15 17 chr3 32280354 32280822 -195243756 + MLT1C LTR MaLR 1 467 0 304 293 0 13 chr3 32281428 32281503 -195243075 + MIR3 SINE MIR 111 184 -24 1035 206 60 0 chr3 32281783 32282074 -195242504 - MER33 DNA MER1_type 0 363 1 1603 182 26 3 chr3 32282332 32282634 -195241944 - AluJb SINE Alu -3 309 1 248 339 68 70 chr3 32282759 32283214 -195241364 + L2 LINE L2 2305 2758 -556 370 171 137 0 chr3 32283279 32283372 -195241206 - MER5A DNA MER1_type -77 112 4 494 308 8 8 chr3 32284116 32284246 -195240332 - L2 LINE L2 -7 3265 3136 231 36 0 0 chr3 32284276 32284304 -195240274 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 1597 230 49 11 chr3 32285027 32285771 -195238807 + MER99 DNA DNA 2 828 0 338 185 19 19 chr3 32287814 32287922 -195236656 + GA-rich Low_complexity Low_complexity 1 108 0 532 279 64 68 chr3 32288432 32288843 -195235735 + LTR16C LTR ERVL 2 491 0 22 35 0 0 chr3 32290379 32290408 -195234170 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 32291309 32291331 -195233247 + AT_rich Low_complexity Low_complexity 1 22 0 591 169 203 6 chr3 32291812 32291965 -195232613 + MER5A DNA MER1_type 1 188 -1 297 346 126 18 chr3 32292506 32292847 -195231731 - L2 LINE L2 -446 2868 2491 354 342 142 0 chr3 32292853 32293043 -195231535 - L3 LINE CR1 -283 1294 1078 275 346 85 7 chr3 32293100 32293253 -195231325 - MIR SINE MIR -48 214 50 1484 48 0 53 chr3 32293957 32294164 -195230414 - L1PA5 LINE L1 -1 6153 5958 390 296 0 0 chr3 32294804 32294902 -195229676 - MER5A DNA MER1_type -83 106 9 262 300 24 123 chr3 32295589 32295759 -195228819 - L3 LINE CR1 -434 1143 991 385 341 45 31 chr3 32295792 32296082 -195228496 - L2 LINE L2 -831 2483 2190 21 36 0 0 chr3 32296707 32296735 -195227843 + AT_rich Low_complexity Low_complexity 1 28 0 808 358 70 39 chr3 32298075 32298799 -195225779 + L2 LINE L2 2511 3244 -28 276 170 0 0 chr3 32299256 32299309 -195225269 + CT-rich Low_complexity Low_complexity 1 53 0 2051 109 4 0 chr3 32300836 32301111 -195223467 + AluSx SINE Alu 1 276 -36 486 0 0 0 chr3 32301134 32301188 -195223390 + (TA)n Simple_repeat Simple_repeat 2 55 0 350 310 9 17 chr3 32301188 32301304 -195223274 - MER5B DNA MER1_type -61 117 3 916 233 46 120 chr3 32303487 32303903 -195220675 + MLT1C LTR MaLR 6 467 0 213 266 72 78 chr3 32304158 32304294 -195220284 + MIR3 SINE MIR 41 177 -31 891 185 60 15 chr3 32304742 32304942 -195219636 - MER3 DNA MER1_type 0 209 1 525 188 211 0 chr3 32304952 32305085 -195219493 - MER5A DNA MER1_type -21 168 8 2272 102 7 3 chr3 32305266 32305600 -195218978 + AluSq SINE Alu 1 335 0 1288 181 0 13 chr3 32305683 32305909 -195218669 - MER58A DNA MER1_type 0 224 2 199 344 58 39 chr3 32306230 32306384 -195218194 - MIR3 SINE MIR -18 190 34 21 36 0 0 chr3 32306687 32306715 -195217863 + AT_rich Low_complexity Low_complexity 1 28 0 325 258 89 61 chr3 32307036 32307200 -195217378 - MIR SINE MIR -56 152 19 232 257 95 0 chr3 32307869 32307943 -195216635 - L1MC/D LINE L1 -891 5442 5362 358 297 72 34 chr3 32308025 32308443 -195216135 - L1MC/D LINE L1 -915 5231 4798 583 258 24 57 chr3 32310123 32310332 -195214246 + LTR67 LTR ERVL 356 557 0 233 253 111 95 chr3 32310856 32311046 -195213532 - L1ME3A LINE L1 -15 6089 5897 1129 285 98 25 chr3 32311099 32311697 -195212881 - L1ME3A LINE L1 -206 5898 5275 22 94 0 0 chr3 32312085 32312149 -195212429 + AT_rich Low_complexity Low_complexity 1 64 0 428 301 44 40 chr3 32312767 32312993 -195211585 + L1ME4a LINE L1 5598 5824 -297 180 0 0 0 chr3 32313072 32313092 -195211486 + (A)n Simple_repeat Simple_repeat 1 20 0 1010 213 23 14 chr3 32313709 32313925 -195210653 - MER20 DNA MER1_type -1 218 1 300 266 0 0 chr3 32314238 32314317 -195210261 + L1ME4a LINE L1 6042 6120 -1 295 238 32 0 chr3 32315480 32315543 -195209035 + MER81 DNA DNA 29 93 -21 304 297 22 0 chr3 32316291 32316382 -195208196 + L2 LINE L2 2967 3059 -213 242 252 118 82 chr3 32316434 32316536 -195208042 + L2 LINE L2 3172 3282 -31 1441 241 84 53 chr3 32316536 32317060 -195207518 + MLT1F LTR MaLR 1 540 -2 242 252 118 82 chr3 32317060 32317092 -195207486 + L2 LINE L2 3282 3311 -2 1263 233 49 56 chr3 32317395 32317786 -195206792 - LTR16A LTR ERVL -8 442 55 23 33 0 0 chr3 32318038 32318068 -195206510 + AT_rich Low_complexity Low_complexity 1 30 0 1755 204 105 4 chr3 32318994 32319451 -195205127 + L1M4 LINE L1 4639 5141 -1005 302 167 0 15 chr3 32320999 32321065 -195203513 + (TA)n Simple_repeat Simple_repeat 2 66 0 48 32 0 0 chr3 32321340 32321402 -195203176 + AT_rich Low_complexity Low_complexity 1 62 0 29 28 0 0 chr3 32321713 32321749 -195202829 + AT_rich Low_complexity Low_complexity 1 36 0 229 314 111 33 chr3 32322065 32322460 -195202118 - L1P LINE L1 -842 5304 4879 588 326 105 25 chr3 32322490 32322566 -195202012 - L1ME3A LINE L1 -1302 4778 4710 1849 163 48 21 chr3 32322566 32322903 -195201675 + MER7A DNA MER2_type 2 345 -1 588 326 105 25 chr3 32322903 32323346 -195201232 - L1ME3A LINE L1 -1370 4710 4217 594 325 89 25 chr3 32323355 32324260 -195200318 - L1ME3A LINE L1 -2983 3097 2135 322 182 8 149 chr3 32324286 32324407 -195200171 - L1ME3A LINE L1 -5955 115 12 246 244 0 0 chr3 32325079 32325124 -195199454 + L2 LINE L2 3197 3241 -31 1629 137 152 22 chr3 32325481 32325796 -195198782 + THE1B LTR MaLR 1 356 -8 1376 80 11 0 chr3 32325796 32325983 -195198595 + THE1B-int LTR MaLR 417 605 -975 837 71 0 0 chr3 32326010 32326123 -195198455 + THE1B-int LTR MaLR 1468 1580 0 1758 141 68 89 chr3 32326125 32326285 -195198293 + THE1B LTR MaLR 3 165 -199 2124 125 10 0 chr3 32326285 32326589 -195197989 + AluSp SINE Alu 3 309 -4 1758 141 68 89 chr3 32326589 32326798 -195197780 + THE1B LTR MaLR 165 364 0 424 294 124 38 chr3 32327103 32327450 -195197128 - L1MEd LINE L1 -4086 2224 1848 705 288 78 51 chr3 32327706 32328237 -195196341 - L1MEd LINE L1 -4687 1623 1108 1910 155 0 17 chr3 32328237 32328534 -195196044 - AluJb SINE Alu -20 292 1 705 288 78 51 chr3 32328534 32329050 -195195528 - L1MEd LINE L1 -5202 1108 521 6128 137 14 12 chr3 32329474 32330829 -195193749 - L1MA5A LINE L1 -53 6886 5529 8853 220 41 18 chr3 32330829 32332866 -195191712 - L1MA5A LINE L1 -1920 4868 2879 1998 138 14 0 chr3 32332866 32333149 -195191429 - AluSx SINE Alu -25 287 1 8853 220 41 18 chr3 32333149 32335850 -195188728 - L1MA5A LINE L1 -3909 2879 7 434 242 66 91 chr3 32335862 32336347 -195188231 - L1MEd LINE L1 -3019 3110 2638 2033 87 19 72 chr3 32336361 32336682 -195187896 - AluSc SINE Alu -5 304 1 2492 68 7 0 chr3 32336952 32337261 -195187317 - AluY SINE Alu 0 311 1 311 275 14 14 chr3 32337284 32337422 -195187156 - L1MEd LINE L1 -3858 2271 2134 219 253 0 24 chr3 32337436 32337519 -195187059 + T-rich Low_complexity Low_complexity 1 81 0 635 268 51 78 chr3 32337889 32338600 -195185978 - L1MEd LINE L1 -4655 1655 943 520 237 20 66 chr3 32339009 32339161 -195185417 + MER69 DNA AcHobo 2 146 -2380 674 306 10 0 chr3 32339175 32339374 -195185204 - L1ME LINE L1 -481 5681 5481 354 326 53 0 chr3 32339384 32339479 -195185099 + MER69 DNA AcHobo 182 281 -2245 * 3449 213 57 37 chr3 32339475 32339561 -195185017 + MER69 DNA AcHobo 1457 1540 -986 1327 192 39 103 chr3 32339561 32339951 -195184627 + MLT1A1 LTR MaLR 1 365 0 3449 213 57 37 chr3 32339951 32340549 -195184029 + MER69 DNA AcHobo 1540 2174 -352 1628 144 7 64 chr3 32340549 32340892 -195183686 + AluJb SINE Alu 1 326 0 3449 213 57 37 chr3 32340892 32341253 -195183325 + MER69 DNA AcHobo 2174 2526 0 1284 151 26 8 chr3 32341669 32342031 -195182547 + Tigger1 DNA MER2_type 2 2417 -1 314 60 0 20 chr3 32342520 32342570 -195182008 + (CA)n Simple_repeat Simple_repeat 2 50 0 480 77 0 0 chr3 32342953 32343018 -195181560 + (TA)n Simple_repeat Simple_repeat 2 66 0 2042 108 7 0 chr3 32344388 32344668 -195179910 + AluSc SINE Alu 1 333 0 272 59 20 20 chr3 32344668 32344719 -195179859 + (CAAA)n Simple_repeat Simple_repeat 2 108 0 24 77 0 0 chr3 32345402 32345454 -195179124 + AT_rich Low_complexity Low_complexity 1 52 0 1327 137 26 13 chr3 32347010 32347237 -195177341 + MER30 DNA MER1_type 1 230 0 331 387 6 12 chr3 32347904 32348072 -195176506 + L2 LINE L2 2108 2274 -1040 210 37 0 0 chr3 32348405 32348432 -195176146 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 801 317 75 26 chr3 32348485 32348980 -195175598 + ERVL LTR ERVL 4458 4976 -788 221 386 7 14 chr3 32348994 32349139 -195175439 - L2 LINE L2 -1063 2251 2108 259 313 0 0 chr3 32349409 32349476 -195175102 + ERVL LTR ERVL 5215 5281 -483 181 203 0 34 chr3 32349598 32349657 -195174921 + (TA)n Simple_repeat Simple_repeat 2 58 0 428 277 5 68 chr3 32350286 32350492 -195174086 + LTR67 LTR ERVL 365 557 0 195 290 16 48 chr3 32351636 32351698 -195172880 + MIR SINE MIR 14 73 -189 2016 149 25 71 chr3 32351698 32352144 -195172434 - MLT1B LTR MaLR 0 467 12 706 322 25 9 chr3 32354516 32354836 -195169742 - HAL1b LINE L1 -781 567 243 21 36 0 0 chr3 32354874 32354902 -195169676 + AT_rich Low_complexity Low_complexity 1 28 0 2019 143 3 3 chr3 32354902 32355202 -195169376 + AluSx SINE Alu 1 300 -12 421 183 151 0 chr3 32355202 32355295 -195169283 - L1MC3 LINE L1 -490 7575 7469 233 315 22 11 chr3 32355296 32355385 -195169193 - MLT1F1 LTR MaLR -442 125 36 3183 188 72 95 chr3 32355386 32356885 -195167693 - L1MC3 LINE L1 -684 7381 6060 776 209 0 7 chr3 32356885 32357057 -195167521 - AluJb SINE Alu 0 306 136 3124 200 66 10 chr3 32357057 32358257 -195166321 - L1MC3 LINE L1 -743 5683 4798 384 88 0 0 chr3 32358260 32358317 -195166261 + (TTTA)n Simple_repeat Simple_repeat 3 59 0 1560 159 43 0 chr3 32358318 32358575 -195166003 - AluJb SINE Alu -36 276 9 346 264 34 40 chr3 32358580 32358728 -195165850 - L1MC3 LINE L1 -1688 4738 4592 14285 94 9 0 chr3 32358771 32361598 -195162980 - L1PA8 LINE L1 0 6172 3325 3069 108 15 8 chr3 32361598 32362116 -195162462 + L1PA8 LINE L1 2793 3314 -2832 1395 234 34 29 chr3 32362127 32362571 -195162007 - L1MC3 LINE L1 -1836 4590 4145 5461 209 143 91 chr3 32362597 32365147 -195159431 - L1MC3 LINE L1 -3873 2734 6 219 69 0 0 chr3 32365453 32365482 -195159096 + (TTC)n Simple_repeat Simple_repeat 2 30 0 567 235 116 29 chr3 32367386 32367675 -195156903 + MER45B DNA AcHobo 55 449 -591 21 0 0 0 chr3 32367744 32367765 -195156813 + AT_rich Low_complexity Low_complexity 1 21 0 581 266 149 0 chr3 32368040 32368194 -195156384 - MER5A DNA MER1_type -6 183 7 768 316 75 36 chr3 32368200 32368314 -195156264 + MLT1L LTR MaLR 97 205 -410 2208 109 0 0 chr3 32368314 32368616 -195155962 + AluSg SINE Alu 1 302 -8 768 316 75 36 chr3 32368616 32368995 -195155583 + MLT1L LTR MaLR 205 609 -6 435 262 74 0 chr3 32369730 32369852 -195154726 - MER5B DNA MER1_type -3 175 45 890 210 142 30 chr3 32369858 32370196 -195154382 - L1MC4 LINE L1 0 8042 7667 379 241 43 29 chr3 32371181 32371358 -195153220 - MLT1F LTR MaLR 0 563 395 1110 151 0 78 chr3 32371436 32371654 -195152924 - AluSx SINE Alu -111 201 1 426 258 64 35 chr3 32371706 32371923 -195152655 - MLT1F LTR MaLR -321 234 4 489 127 25 0 chr3 32372145 32372224 -195152354 - AluS SINE Alu -232 81 1 501 220 48 37 chr3 32372276 32372493 -195152085 - MLT1F LTR MaLR -321 234 4 1851 188 46 28 chr3 32373132 32373521 -195151057 - MSTD LTR MaLR 0 396 1 1619 164 27 27 chr3 32424879 32425177 -195099401 + AluJb SINE Alu 1 298 -14 22 0 0 0 chr3 32425291 32425313 -195099265 + AT_rich Low_complexity Low_complexity 1 22 0 669 268 34 19 chr3 32425422 32425627 -195098951 + MIR SINE MIR 6 213 -49 225 0 0 0 chr3 32426200 32426225 -195098353 + (A)n Simple_repeat Simple_repeat 1 25 0 248 352 39 31 chr3 32426283 32426411 -195098167 - L2 LINE L2 -6 3307 3179 406 295 147 10 chr3 32428770 32428963 -195095615 + MIR SINE MIR 16 231 -31 567 224 160 0 chr3 32429101 32429257 -195095321 + MER5A DNA MER1_type 9 189 0 333 0 0 0 chr3 32429358 32429395 -195095183 + (CA)n Simple_repeat Simple_repeat 2 38 0 264 259 17 0 chr3 32429453 32429511 -195095067 + L2 LINE L2 3209 3267 -5 878 254 168 0 chr3 32430831 32431099 -195093479 - MLT1J1 LTR MaLR -133 313 1 193 125 31 0 chr3 32431304 32431336 -195093242 + MIR SINE MIR 163 195 -67 890 250 5 5 chr3 32431624 32431824 -195092754 + MIR SINE MIR 61 260 -2 370 271 181 7 chr3 32432453 32432597 -195091981 - MER5A DNA MER1_type -6 183 15 * 420 220 20 20 chr3 32432589 32432689 -195091889 + MER5A DNA MER1_type 90 189 0 230 304 0 25 chr3 32433060 32433139 -195091439 + MER81 DNA DNA 1 77 -37 471 271 199 0 chr3 32433170 32433321 -195091257 - MER5A DNA MER1_type 0 189 9 1797 161 7 3 chr3 32433533 32433818 -195090760 - AluJb SINE Alu -26 286 1 1396 140 133 36 chr3 32434478 32434786 -195089792 - MER44D DNA MER2_type -1 608 1 1532 176 107 3 chr3 32434875 32435194 -195089384 + MER82 DNA MER2_type 14 365 -288 521 246 0 29 chr3 32435363 32435384 -195089194 + MER58B DNA MER1_type 178 198 -2222 828 198 173 64 chr3 32435384 32435713 -195088865 - MLT1A1 LTR MaLR 0 365 1 521 246 0 29 chr3 32435713 32435829 -195088749 + MER58B DNA MER1_type 198 311 -30 412 189 3 9 chr3 32435821 32435910 -195088668 - MLT1I LTR MaLR -247 192 98 * 583 221 179 0 chr3 32436195 32436335 -195088243 - MER5A DNA MER1_type -21 168 4 1820 169 27 3 chr3 32436610 32436906 -195087672 + AluJb SINE Alu 1 303 -9 1870 190 38 5 chr3 32437834 32438256 -195086322 + L1MB7 LINE L1 5509 5944 -240 244 341 7 7 chr3 32438664 32438799 -195085779 - L1MEc LINE L1 -6181 215 81 1116 285 44 25 chr3 32439940 32440491 -195084087 + L1ME3A LINE L1 5402 5962 -208 324 291 148 22 chr3 32440548 32440730 -195083848 + L1ME3A LINE L1 5961 6165 -5 420 325 41 0 chr3 32440809 32440978 -195083600 - MLT1L LTR MaLR -8 607 432 1503 183 7 48 chr3 32441855 32442145 -195082433 - AluJo SINE Alu -14 298 21 2222 180 5 9 chr3 32442256 32442679 -195081899 - L1MC3 LINE L1 -980 6805 6385 2293 107 3 0 chr3 32442701 32442999 -195081579 - AluSp SINE Alu -14 299 1 555 254 112 83 chr3 32446570 32446909 -195077669 + LTR16A1 LTR ERVL 107 455 -2 240 173 39 19 chr3 32447034 32447138 -195077440 + CT-rich Low_complexity Low_complexity 3 108 0 1228 159 94 52 chr3 32447634 32447967 -195076611 + MER47B DNA MER2_type 1 418 0 838 244 6 0 chr3 32448640 32448820 -195075758 - MER5A DNA MER1_type 0 189 9 326 254 176 59 chr3 32448882 32449189 -195075389 - L1M2 LINE L1 -5575 1274 932 201 74 0 0 chr3 32450234 32450261 -195074317 + (TG)n Simple_repeat Simple_repeat 1 27 0 183 42 0 0 chr3 32450478 32450502 -195074076 + (TG)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr3 32450676 32450698 -195073880 + AT_rich Low_complexity Low_complexity 1 22 0 294 303 40 30 chr3 32452320 32452419 -195072159 - L2 LINE L2 0 3272 3173 207 0 0 0 chr3 32452442 32452465 -195072113 + (TA)n Simple_repeat Simple_repeat 2 24 0 535 330 12 6 chr3 32452555 32452728 -195071850 + MIR SINE MIR 28 201 -61 * 691 298 76 96 chr3 32452715 32453547 -195071031 + L2 LINE L2 1666 2480 -834 362 349 7 7 chr3 32454700 32454849 -195069729 + CT-rich Low_complexity Low_complexity 3 151 0 349 302 138 16 chr3 32455278 32455467 -195069111 - MIR SINE MIR -1 261 50 766 249 88 9 chr3 32456247 32456464 -195068114 + L2 LINE L2 2610 2843 -471 448 264 99 22 chr3 32456713 32456895 -195067683 - L2 LINE L2 0 3313 3118 2179 209 118 27 chr3 32457668 32458195 -195066383 - MLT1E2 LTR MaLR 0 626 52 355 243 133 128 chr3 32458515 32458852 -195065726 - MER102b DNA MER1_type -2 339 1 271 342 9 18 chr3 32460367 32460504 -195064074 + MIR SINE MIR 2 135 -73 2215 99 0 3 chr3 32461014 32461306 -195063272 - AluSg SINE Alu -17 293 3 488 307 13 7 chr3 32461676 32461826 -195062752 - MIR3 SINE MIR -28 180 30 189 274 24 83 chr3 32461823 32461907 -195062671 - L2 LINE L2 -9 3263 3185 * 225 290 123 51 chr3 32461966 32462104 -195062474 - MIR3 SINE MIR -1 207 60 227 296 195 10 chr3 32462182 32462376 -195062202 + MIR SINE MIR 24 252 -10 188 402 62 0 chr3 32463885 32463997 -195060581 + L2 LINE L2 3143 3261 -11 382 305 94 42 chr3 32464010 32464239 -195060339 - MIR SINE MIR -3 259 10 2366 86 3 0 chr3 32465623 32465924 -195058654 + AluY SINE Alu 1 302 -9 1493 203 22 7 chr3 32466226 32466502 -195058076 + AluJb SINE Alu 1 280 -32 245 304 35 35 chr3 32467403 32467518 -195057060 + MIR SINE MIR 27 141 -121 336 247 0 0 chr3 32468153 32468234 -195056344 + MER113 DNA MER1_type? 388 468 -53 1999 149 120 16 chr3 32468260 32468636 -195055942 + MSTB LTR MaLR 6 420 -6 396 207 193 22 chr3 32470458 32470593 -195053985 + MER5A DNA MER1_type 1 158 -31 771 189 15 15 chr3 32471734 32471866 -195052712 + FLAM_C SINE Alu 2 133 0 274 346 58 0 chr3 32472197 32472301 -195052277 + L2 LINE L2 3163 3272 0 201 158 0 0 chr3 32472515 32472553 -195052025 + T-rich Low_complexity Low_complexity 1 38 0 235 150 67 0 chr3 32473231 32473291 -195051287 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 247 310 4 27 chr3 32473627 32473766 -195050812 + CT-rich Low_complexity Low_complexity 1 218 0 2145 227 150 52 chr3 32474410 32475162 -195049416 - LTR1B LTR ERV1 0 826 1 917 187 124 42 chr3 32475167 32475408 -195049170 - LTR48B LTR ERV1 -1 643 383 1197 233 134 37 chr3 32475409 32475842 -195048736 - LTR48 LTR ERV1 -312 475 1 228 224 0 0 chr3 32475906 32475955 -195048623 + MIR SINE MIR 106 154 -108 783 303 72 27 chr3 32476431 32476834 -195047744 - LTR16A LTR ERVL -14 436 16 899 230 88 0 chr3 32477507 32477746 -195046832 + MER63 DNA MER1_type 796 1055 -5 297 0 0 0 chr3 32477895 32477928 -195046650 + (T)n Simple_repeat Simple_repeat 1 33 0 1903 220 112 109 chr3 32478494 32479318 -195045260 - LTR1B LTR ERV1 0 826 1 337 333 44 28 chr3 32479454 32479634 -195044944 - MIR SINE MIR -38 224 42 253 246 66 0 chr3 32480862 32480923 -195043655 - L2 LINE L2 -12 3301 3237 2516 74 0 0 chr3 32481559 32481868 -195042710 - AluY SINE Alu -2 309 1 1047 242 33 0 chr3 32481905 32482116 -195042462 - MER20 DNA MER1_type 0 219 2 1735 144 7 14 chr3 32482125 32482427 -195042151 + MER1B DNA MER1_type 1 328 -1 654 199 31 25 chr3 32482444 32482605 -195041973 - MIR SINE MIR -19 243 82 545 301 67 14 chr3 32485170 32485379 -195039199 + MIR SINE MIR 25 244 -18 351 0 0 0 chr3 32486246 32486285 -195038293 + (TC)n Simple_repeat Simple_repeat 2 40 0 887 158 94 64 chr3 32486658 32486892 -195037686 + L1MB8 LINE L1 5936 6176 -2 2260 102 0 10 chr3 32486901 32487206 -195037372 + AluY SINE Alu 1 302 -9 641 280 26 32 chr3 32488340 32488529 -195036049 + MER5A DNA MER1_type 1 188 -1 818 206 19 7 chr3 32488562 32488717 -195035861 - MER20 DNA MER1_type -62 157 1 209 261 58 72 chr3 32488722 32488860 -195035718 - MER5A DNA MER1_type -37 152 17 484 319 84 33 chr3 32489005 32489278 -195035300 - L2 LINE L2 -205 3108 2822 2461 59 3 13 chr3 32489613 32489918 -195034660 - AluY SINE Alu -9 302 1 181 94 0 62 chr3 32489921 32489953 -195034625 - MER5A DNA MER1_type -116 73 44 814 164 0 97 chr3 32491262 32491469 -195033109 - MER53 DNA DNA 0 189 3 1326 193 57 15 chr3 32491508 32491619 -195032959 + AluJo SINE Alu 7 112 -200 185 0 40 0 chr3 32491619 32491644 -195032934 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 1326 193 57 15 chr3 32491644 32491797 -195032781 + AluJo SINE Alu 112 282 -30 2132 106 0 0 chr3 32492660 32492935 -195031643 + AluSx SINE Alu 38 312 0 1242 204 104 26 chr3 32493583 32493891 -195030687 - MER58B DNA MER1_type -5 336 5 194 171 29 0 chr3 32494658 32494693 -195029885 - MIR SINE MIR -142 120 85 671 170 220 6 chr3 32494753 32494912 -195029666 + Tigger3(Golem) DNA MER2_type 2837 3029 0 1425 207 66 0 chr3 32494944 32495248 -195029330 - MER2 DNA MER2_type -21 324 1 1823 207 91 42 chr3 32495280 32495777 -195028801 - Charlie1b DNA MER1_type -2 521 1 1055 243 49 4 chr3 32496261 32496508 -195028070 + Tigger7 DNA MER2_type 1 258 -292 589 137 21 11 chr3 32496515 32496610 -195027968 + Tigger7 DNA MER2_type 2391 2486 -1 195 294 155 49 chr3 32497648 32497893 -195026685 + L2 LINE L2 1372 1642 -1672 312 194 16 0 chr3 32498615 32498677 -195025901 + MER58B DNA MER1_type 275 337 -4 447 269 223 0 chr3 32498689 32498819 -195025759 - MER5A DNA MER1_type -24 165 7 465 269 36 8 chr3 32499065 32499247 -195025331 + MER8 DNA MER2_type 6 239 0 595 268 106 0 chr3 32499256 32499435 -195025143 - MIR SINE MIR -44 218 21 3756 146 42 29 chr3 32500573 32501291 -195023287 - LTR8A LTR ERV1 0 727 1 2888 126 47 45 chr3 32502333 32502943 -195021635 + MER4B LTR ERV1 1 779 0 287 287 63 14 chr3 32503484 32503627 -195020951 - L1ME LINE L1 -284 5820 5671 227 306 76 7 chr3 32503740 32503884 -195020694 - L1ME LINE L1 -630 5517 5364 552 277 196 8 chr3 32503929 32504428 -195020150 - L1ME LINE L1 -847 5282 4690 1511 197 95 0 chr3 32504619 32504944 -195019634 - L1MA3 LINE L1 -11 6294 5939 250 266 139 25 chr3 32504967 32505125 -195019453 - L1ME LINE L1 -2022 4107 3932 2371 284 88 42 chr3 32505185 32506262 -195018316 + L2 LINE L2 1903 3041 -272 2293 166 31 5 chr3 32506262 32506679 -195017899 - MSTB1 LTR MaLR -4 428 1 2371 284 88 42 chr3 32506679 32506753 -195017825 + L2 LINE L2 3041 3110 -203 705 270 56 25 chr3 32506814 32507010 -195017568 - MER58A DNA MER1_type 0 224 23 255 226 0 0 chr3 32507186 32507248 -195017330 - L1ME LINE L1 -2659 3470 3409 406 262 137 64 chr3 32507321 32507729 -195016849 - L1ME LINE L1 -2868 3261 2824 1508 164 141 10 chr3 32507748 32508052 -195016526 - MER2 DNA MER2_type 0 345 2 244 135 0 0 chr3 32508092 32508129 -195016449 - L1ME LINE L1 -3382 2747 2711 305 319 84 31 chr3 32508325 32508551 -195016027 - L1ME LINE L1 -3659 2470 2233 21 36 0 0 chr3 32508651 32508679 -195015899 + AT_rich Low_complexity Low_complexity 1 28 0 550 293 35 6 chr3 32509272 32509446 -195015132 + MIR SINE MIR 84 262 0 2759 216 38 55 chr3 32509493 32510286 -195014292 - L1MC4a LINE L1 -23 7785 7007 309 275 28 9 chr3 32511255 32511364 -195013214 + HAL1 LINE L1 263 373 -2134 303 349 34 23 chr3 32511439 32511614 -195012964 + HAL1 LINE L1 493 669 -1838 310 224 158 29 chr3 32511944 32512190 -195012388 - L1M4 LINE L1 -3665 2481 2204 * 606 249 51 32 chr3 32512183 32512400 -195012178 - HAL1 LINE L1 -1540 967 747 981 170 47 52 chr3 32512406 32512618 -195011960 - MER20 DNA MER1_type -7 212 2 398 250 53 15 chr3 32512619 32512751 -195011827 - HAL1 LINE L1 -1753 754 618 22 56 0 0 chr3 32512754 32512790 -195011788 + AT_rich Low_complexity Low_complexity 1 36 0 294 286 128 95 chr3 32512799 32513016 -195011562 - L1ME LINE L1 -5241 878 670 2582 51 0 6 chr3 32513016 32513327 -195011251 + AluY SINE Alu 1 309 -2 294 286 128 95 chr3 32513327 32513411 -195011167 - L1ME LINE L1 -5449 670 590 652 189 8 8 chr3 32513411 32513538 -195011040 + FLAM_C SINE Alu 2 128 -5 294 286 128 95 chr3 32513538 32513774 -195010804 - L1ME LINE L1 -5529 590 322 254 189 0 0 chr3 32514243 32514296 -195010282 + HAL1 LINE L1 968 1020 -1487 449 209 191 36 chr3 32514658 32514827 -195009751 + Charlie1 DNA MER1_type 2502 2716 -45 1801 139 63 41 chr3 32514827 32515194 -195009384 + THE1C LTR MaLR 1 375 0 449 209 191 36 chr3 32515194 32515249 -195009329 + Charlie1 DNA MER1_type 2716 2761 0 687 292 155 22 chr3 32515261 32515583 -195008995 + HAL1 LINE L1 1206 1570 -937 464 270 146 24 chr3 32515615 32516108 -195008470 + HAL1 LINE L1 1826 2378 -129 1103 207 153 7 chr3 32516131 32516431 -195008147 - MER2 DNA MER2_type 0 344 1 391 247 234 53 chr3 32516707 32517011 -195007567 + MLT1L LTR MaLR 163 521 -94 351 0 0 0 chr3 32517241 32517280 -195007298 + (TG)n Simple_repeat Simple_repeat 2 40 0 358 342 30 35 chr3 32519108 32519339 -195005239 + L3 LINE CR1 1345 1574 -3 1631 187 32 0 chr3 32520332 32520615 -195003963 - AluJb SINE Alu -15 297 6 266 267 89 11 chr3 32522124 32522278 -195002300 - MIR SINE MIR -1 261 43 366 21 0 0 chr3 32522300 32522348 -195002230 - L1PA6 LINE L1 0 6154 6107 306 0 0 0 chr3 32523560 32523594 -195000984 + (TG)n Simple_repeat Simple_repeat 2 35 0 554 256 0 0 chr3 32524351 32524468 -195000110 + FLAM_C SINE Alu 1 117 -26 358 268 99 49 chr3 32524694 32524836 -194999742 + MIR SINE MIR 2 150 -112 523 288 42 67 chr3 32525182 32525422 -194999156 + MIR SINE MIR 19 252 -10 21 36 0 0 chr3 32525448 32525476 -194999102 + AT_rich Low_complexity Low_complexity 1 28 0 1670 182 14 24 chr3 32527412 32527709 -194996869 - AluJo SINE Alu -18 294 1 2940 156 26 11 chr3 32527995 32528528 -194996050 - L1PA16 LINE L1 -1 6165 5625 221 343 67 9 chr3 32528613 32528718 -194995860 - L2 LINE L2 0 3313 3203 244 298 42 10 chr3 32529043 32529139 -194995439 - MIR SINE MIR -67 141 54 630 233 8 0 chr3 32529221 32529341 -194995237 - MER5A DNA MER1_type -1 188 68 294 309 27 9 chr3 32529243 32529353 -194995225 + MER5A DNA MER1_type 36 147 -42 * 314 104 0 0 chr3 32529500 32529548 -194995030 - Alu SINE Alu -4 297 250 3057 183 48 42 chr3 32529569 32530146 -194994432 + L1MB4 LINE L1 5454 6038 -142 2227 98 0 0 chr3 32530146 32530443 -194994135 - AluY SINE Alu -14 297 1 3057 183 48 42 chr3 32530443 32530587 -194993991 + L1MB4 LINE L1 6038 6180 0 277 257 79 21 chr3 32531667 32531807 -194992771 + MER103 DNA DNA 18 165 -1 42 57 0 0 chr3 32532192 32532262 -194992316 + AT_rich Low_complexity Low_complexity 1 70 0 315 276 95 82 chr3 32532637 32532880 -194991698 - MLT1J LTR MaLR -156 355 110 523 265 114 12 chr3 32532893 32532990 -194991588 + MER5A DNA MER1_type 5 91 -98 885 221 17 0 chr3 32532990 32533162 -194991416 - MER45A DNA AcHobo -2 176 2 523 265 114 12 chr3 32533162 32533230 -194991348 + MER5A DNA MER1_type 91 187 -2 21 0 0 0 chr3 32533904 32533925 -194990653 + AT_rich Low_complexity Low_complexity 1 21 0 681 211 0 0 chr3 32535295 32535423 -194989155 - FLAM_A SINE Alu -4 129 2 215 115 154 19 chr3 32535718 32535770 -194988808 - MIR SINE MIR -8 254 196 548 114 0 0 chr3 32535784 32535863 -194988715 - MADE1 DNA Mariner -1 79 1 239 167 50 0 chr3 32535870 32535930 -194988648 + (TA)n Simple_repeat Simple_repeat 1 63 0 356 338 127 0 chr3 32535953 32536095 -194988483 - MIR SINE MIR -57 205 46 359 258 75 13 chr3 32536376 32536535 -194988043 + Charlie2 DNA MER1_type 394 562 -2220 1033 251 86 19 chr3 32536590 32536952 -194987626 + Charlie2a DNA MER1_type 1464 1849 -1013 26 30 0 0 chr3 32537005 32537038 -194987540 + AT_rich Low_complexity Low_complexity 1 33 0 492 249 90 55 chr3 32537151 32537496 -194987082 + Charlie2a DNA MER1_type 2487 2843 -19 396 147 15 15 chr3 32538129 32538197 -194986381 - LTR16B LTR ERVL 0 464 397 6388 52 33 1 chr3 32538208 32539030 -194985548 + L1PA7 LINE L1 5304 6151 -3 355 296 9 9 chr3 32539376 32539484 -194985094 + MLT1L LTR MaLR 193 300 -315 2273 118 0 6 chr3 32540445 32540759 -194983819 + AluSx SINE Alu 1 312 0 308 261 14 0 chr3 32540946 32541015 -194983563 - L2 LINE L2 -1 3312 3243 665 251 56 11 chr3 32541090 32541269 -194983309 - MER5A DNA MER1_type -2 187 1 287 73 0 0 chr3 32542777 32542818 -194981760 - L2 LINE L2 0 3313 3273 188 190 155 35 chr3 32543620 32543678 -194980900 - MIR SINE MIR -190 72 8 942 292 71 37 chr3 32544031 32544466 -194980112 - MLT1J2 LTR MaLR 0 450 1 853 153 0 0 chr3 32545187 32545311 -194979267 + FLAM_C SINE Alu 1 124 -9 617 305 44 0 chr3 32545758 32545961 -194978617 + MIR SINE MIR 51 262 0 480 337 106 36 chr3 32545964 32546267 -194978311 + L3 LINE CR1 1247 1570 -7 2459 64 0 13 chr3 32546489 32546800 -194977778 - AluY SINE Alu -4 307 1 195 184 0 0 chr3 32546900 32546938 -194977640 + CT-rich Low_complexity Low_complexity 2 39 0 1608 184 75 0 chr3 32548014 32548334 -194976244 + MER2 DNA MER2_type 1 344 0 945 220 121 3 chr3 32548735 32549017 -194975561 - MER33 DNA MER1_type -4 320 6 943 261 108 16 chr3 32550134 32550556 -194974022 + L1ME3 LINE L1 5504 5983 -179 22 0 0 0 chr3 32550609 32550631 -194973947 + AT_rich Low_complexity Low_complexity 1 22 0 2955 213 121 34 chr3 32550715 32551064 -194973514 + L1MB7 LINE L1 5002 5319 -865 1953 121 14 0 chr3 32551064 32551344 -194973234 - AluSx SINE Alu -28 284 1 2955 213 121 34 chr3 32551344 32552092 -194972486 + L1MB7 LINE L1 5319 6175 -9 2073 103 17 27 chr3 32552118 32552418 -194972160 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr3 32552418 32552439 -194972139 + AT_rich Low_complexity Low_complexity 1 21 0 448 292 148 0 chr3 32552463 32552679 -194971899 + MIR SINE MIR 4 251 -11 2514 145 8 0 chr3 32552802 32553202 -194971376 + MER57A LTR ERV1 1 403 0 324 289 99 26 chr3 32554021 32554173 -194970405 - MIR3 SINE MIR -14 194 32 196 286 10 7 chr3 32555690 32555806 -194968772 + MIR SINE MIR 47 233 -29 675 250 54 50 chr3 32555894 32556154 -194968424 - MIR SINE MIR 0 262 2 212 189 0 0 chr3 32557003 32557040 -194967538 + T-rich Low_complexity Low_complexity 1 37 0 221 363 56 12 chr3 32557430 32557590 -194966988 - MIR3 SINE MIR -6 202 36 391 264 85 0 chr3 32557730 32557836 -194966742 + MER105 DNA DNA 84 198 -6 775 234 40 10 chr3 32557902 32558103 -194966475 + MER3 DNA MER1_type 3 209 0 363 311 169 14 chr3 32558249 32558468 -194966110 + MIR SINE MIR 5 257 -5 1454 198 3 45 chr3 32558878 32559191 -194965387 + AluJo SINE Alu 1 300 -12 23 54 0 0 chr3 32562637 32562674 -194961904 + AT_rich Low_complexity Low_complexity 1 37 0 248 253 53 53 chr3 32563070 32563165 -194961413 - L2 LINE L2 0 3272 3178 252 278 133 11 chr3 32564019 32564109 -194960469 + L2 LINE L2 3197 3297 -16 872 274 73 17 chr3 32564129 32564244 -194960334 - MIR SINE MIR -10 252 145 1289 255 0 13 chr3 32564244 32564550 -194960028 + AluJo SINE Alu 1 302 -10 872 274 73 17 chr3 32564550 32564668 -194959910 - MIR SINE MIR -117 145 6 22 35 0 0 chr3 32564741 32564770 -194959808 + AT_rich Low_complexity Low_complexity 1 29 0 204 311 189 9 chr3 32564960 32565066 -194959512 + L2 LINE L2 2908 3032 -240 331 176 54 14 chr3 32565244 32565318 -194959260 - MER91C DNA MER1_type -63 77 1 186 200 0 0 chr3 32565318 32565358 -194959220 + L2 LINE L2 3268 3307 -6 206 154 77 0 chr3 32565858 32565897 -194958681 - MER91 DNA MER1_type -108 82 41 370 264 67 72 chr3 32571244 32571437 -194953141 + Charlie8 DNA MER1_type 1 192 -2225 323 221 0 0 chr3 32571708 32571776 -194952802 - MER116 DNA Mariner 0 80 13 21 0 0 0 chr3 32571983 32572004 -194952574 + AT_rich Low_complexity Low_complexity 1 21 0 2208 159 45 37 chr3 32572071 32572495 -194952083 - L1MB4 LINE L1 -5 6175 5745 1623 148 0 4 chr3 32572495 32572745 -194951833 - AluSx SINE Alu -7 305 57 2208 159 45 37 chr3 32572745 32572805 -194951773 - L1MB4 LINE L1 -435 5745 5687 700 23 0 0 chr3 32672805 32672892 -194851686 + L1PA4 LINE L1 6066 6152 -3 5567 137 27 21 chr3 32672893 32674896 -194849682 - L1MA3 LINE L1 -150 6155 4143 6923 66 5 0 chr3 32674896 32676274 -194848304 + L1PA5 LINE L1 4768 6151 -3 283 128 12 47 chr3 32677802 32677888 -194846690 + (TA)n Simple_repeat Simple_repeat 1 83 0 2018 194 70 19 chr3 32677893 32678378 -194846200 - L1MA9 LINE L1 -95 6217 5708 24 0 0 0 chr3 32678967 32678991 -194845587 + AT_rich Low_complexity Low_complexity 1 24 0 419 273 39 23 chr3 32679357 32679485 -194845093 + L2 LINE L2 3171 3300 -13 407 252 75 25 chr3 32679622 32679781 -194844797 - MER20B DNA MER1_type -616 167 1 1916 163 7 0 chr3 32681762 32682062 -194842516 - AluSx SINE Alu -5 307 6 459 238 10 20 chr3 32683342 32683443 -194841135 - L2 LINE L2 0 3272 3173 241 324 78 34 chr3 32683700 32683996 -194840582 - L1ME LINE L1 -347 5774 5466 1043 227 46 44 chr3 32684497 32684730 -194839848 + MER39 LTR ERV1 181 412 -295 603 0 0 0 chr3 32684730 32684797 -194839781 + (CA)n Simple_repeat Simple_repeat 2 68 0 1043 227 46 44 chr3 32684797 32684956 -194839622 + MER39 LTR ERV1 412 696 -11 619 291 136 25 chr3 32685037 32685553 -194839025 - L1ME3A LINE L1 -299 5871 5299 780 254 0 5 chr3 32686762 32686947 -194837631 - FRAM SINE Alu 0 176 1 338 233 140 46 chr3 32686957 32687132 -194837446 - MIR SINE MIR -41 221 24 1533 178 259 0 chr3 32688585 32688956 -194835622 - MLT1C LTR MaLR 0 467 1 258 116 0 0 chr3 32689458 32689501 -194835077 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 2356 265 50 26 chr3 32689505 32690233 -194834345 - MER20B DNA MER1_type -4 779 35 228 228 0 0 chr3 32690885 32690942 -194833636 + CT-rich Low_complexity Low_complexity 4 60 0 413 81 65 0 chr3 32691750 32691812 -194832766 + MADE1 DNA Mariner 1 66 -14 261 368 88 0 chr3 32693129 32693243 -194831335 + MIR SINE MIR 20 143 -119 191 355 16 0 chr3 32693679 32693741 -194830837 - MIR3 SINE MIR -4 204 142 273 221 26 13 chr3 32694850 32694927 -194829651 + MER116 DNA Mariner 3 80 0 2047 149 0 0 chr3 32695078 32695460 -194829118 + AluSc SINE Alu 3 384 0 22 0 0 0 chr3 32695462 32695484 -194829094 + AT_rich Low_complexity Low_complexity 1 22 0 612 324 43 8 chr3 32697832 32698085 -194826493 + L2 LINE L2 3051 3312 -1 219 344 0 0 chr3 32698304 32698368 -194826210 + (TCCA)n Simple_repeat Simple_repeat 3 66 0 237 284 49 49 chr3 32698376 32698457 -194826121 - L2 LINE L2 -32 3281 3201 636 268 164 0 chr3 32698750 32698963 -194825615 + MIR SINE MIR 2 249 -13 250 269 99 50 chr3 32699313 32699463 -194825115 - MIR SINE MIR -64 144 10 1420 260 72 52 chr3 32700143 32700696 -194823882 - MLT1E LTR MaLR -29 564 1 205 303 66 33 chr3 32701398 32701520 -194823058 + MIR SINE MIR 21 146 -116 234 86 0 0 chr3 32701659 32701694 -194822884 + MLT2F LTR ERVL 107 141 -522 1255 309 56 12 chr3 32701901 32702380 -194822198 - L2 LINE L2 -4 3309 2810 209 279 73 0 chr3 32702548 32702616 -194821962 + L2 LINE L2 3186 3258 -14 1326 204 45 64 chr3 32704089 32704587 -194819991 + MER39 LTR ERV1 1 707 0 190 463 8 8 chr3 32705145 32705268 -194819310 - L2 LINE L2 -23 3249 3127 180 308 0 0 chr3 32706232 32706284 -194818294 - MIR SINE MIR -50 212 161 702 280 131 18 chr3 32706366 32706748 -194817830 + L1ME3A LINE L1 5674 6098 -72 224 261 29 0 chr3 32707509 32707578 -194817000 + (TTCA)n Simple_repeat Simple_repeat 2 72 0 230 241 63 25 chr3 32707733 32707812 -194816766 - L3 LINE CR1 -1213 364 283 566 147 20 0 chr3 32708096 32708198 -194816380 - L1MA6 LINE L1 0 6300 6197 878 102 30 18 chr3 32708204 32708371 -194816207 + L1M2 LINE L1 5321 5489 -811 540 269 7 14 chr3 32708371 32708516 -194816062 - MIR SINE MIR -22 240 97 1655 56 5 0 chr3 32708603 32708817 -194815761 - L1PA5 LINE L1 0 6154 5940 247 387 42 8 chr3 32708819 32708938 -194815640 - L2 LINE L2 -12 3260 3138 2108 128 3 0 chr3 32709064 32709360 -194815218 - AluJb SINE Alu -15 297 1 411 274 45 110 chr3 32709617 32709953 -194814625 + MLT1H LTR MaLR 70 383 -26 193 143 29 0 chr3 32710051 32710086 -194814492 + L2 LINE L2 3039 3074 -239 1070 226 45 3 chr3 32710193 32710485 -194814093 + MER33 DNA MER1_type 21 324 0 367 320 31 16 chr3 32711638 32711766 -194812812 - MIR SINE MIR -56 152 23 630 204 140 6 chr3 32711852 32712009 -194812569 + MER5B DNA MER1_type 1 178 0 775 211 29 34 chr3 32712369 32712577 -194812001 + MER3 DNA MER1_type 2 208 -1 324 315 29 53 chr3 32713570 32713638 -194810940 + MIR SINE MIR 20 88 -174 464 64 0 170 chr3 32713638 32713732 -194810846 + MADE1 DNA Mariner 1 78 -2 324 315 29 53 chr3 32713732 32713855 -194810723 + MIR SINE MIR 88 203 -59 356 66 49 0 chr3 32714035 32714096 -194810482 - L1MB4 LINE L1 0 6180 6117 2696 170 66 15 chr3 32714098 32714705 -194809873 - L1MB4 LINE L1 -226 5957 5320 918 267 4 28 chr3 32714903 32715150 -194809428 - MIR SINE MIR -5 257 17 803 299 94 39 chr3 32715529 32715963 -194808615 - L2 LINE L2 0 3313 2856 1159 221 40 35 chr3 32717567 32717938 -194806640 - MLT1A2 LTR MaLR 0 374 2 24 53 0 0 chr3 32718032 32718070 -194806508 + AT_rich Low_complexity Low_complexity 1 38 0 1573 210 42 55 chr3 32718319 32718768 -194805810 + MLT1D LTR MaLR 1 444 -61 1819 170 3 0 chr3 32718768 32719068 -194805510 + AluJb SINE Alu 1 301 -11 1573 210 42 55 chr3 32719068 32719123 -194805455 + MLT1D LTR MaLR 444 498 -7 955 179 45 2 chr3 32719365 32719660 -194804918 - MLT1A1 LTR MaLR -2 363 1 27 62 0 0 chr3 32719875 32719923 -194804655 + AT_rich Low_complexity Low_complexity 1 48 0 543 279 13 13 chr3 32721150 32721304 -194803274 + MIR SINE MIR 75 228 -34 23 33 0 0 chr3 32721320 32721350 -194803228 + AT_rich Low_complexity Low_complexity 1 30 0 1340 212 74 37 chr3 32721697 32722175 -194802403 + MLT1D LTR MaLR 1 353 -12 592 326 98 68 chr3 32722382 32723325 -194801253 - L2 LINE L2 -452 2862 1892 723 266 142 4 chr3 32723405 32723631 -194800947 - MIR SINE MIR -5 257 1 272 281 52 52 chr3 32723631 32723770 -194800808 - MIR SINE MIR -62 200 62 871 236 100 133 chr3 32724855 32725352 -194799226 - MLT1J1 LTR MaLR 0 446 1 1164 209 122 40 chr3 32725540 32725942 -194798636 + MSTB2 LTR MaLR 23 457 0 330 359 8 0 chr3 32726322 32726439 -194798139 - L3 LINE CR1 -1 1576 1459 858 327 144 20 chr3 32726940 32727545 -194797033 - L3 LINE CR1 -148 1429 750 21 0 0 0 chr3 32728638 32728659 -194795919 + AT_rich Low_complexity Low_complexity 1 21 0 4938 192 23 7 chr3 32731760 32733396 -194791182 + L1MB7 LINE L1 4229 5892 -292 13713 188 40 12 chr3 32733406 32736750 -194787828 + L1MA4A LINE L1 10 3444 -3404 28274 125 11 58 chr3 32736762 32743220 -194781358 + L1PA7 LINE L1 12 6151 -3 331 273 93 0 chr3 32743222 32743361 -194781217 + L1MA4A LINE L1 3439 3590 -3258 9583 158 23 25 chr3 32743363 32745554 -194779024 + L1MA4A LINE L1 4007 6185 -820 2110 117 7 0 chr3 32745554 32745837 -194778741 - AluSg SINE Alu -25 285 1 9583 158 23 25 chr3 32745837 32746655 -194777923 + L1MA4A LINE L1 6185 7003 -2 923 145 77 133 chr3 32746652 32746716 -194777862 + L1MB7 LINE L1 5879 5945 -239 * 268 25 25 0 chr3 32746716 32746756 -194777822 - MADE1 DNA Mariner -3 77 37 923 145 77 133 chr3 32746756 32746976 -194777602 + L1MB7 LINE L1 5945 6184 0 21 0 0 0 chr3 32747629 32747650 -194776928 + AT_rich Low_complexity Low_complexity 1 21 0 208 250 191 0 chr3 32748281 32748349 -194776229 + L2 LINE L2 3229 3309 -4 373 315 80 63 chr3 32749222 32749508 -194775070 + L1ME LINE L1 4 294 -5776 4001 227 87 64 chr3 32749978 32751193 -194773385 + L1ME LINE L1 3031 4216 -1884 2115 144 11 40 chr3 32751193 32751279 -194773299 - MER47A DNA MER2_type -1957 366 279 1912 159 51 0 chr3 32751279 32751574 -194773004 + AluSg SINE Alu 1 310 0 2115 144 11 40 chr3 32751574 32751863 -194772715 - MER47A DNA MER2_type -2044 279 2 4001 227 87 64 chr3 32751863 32752993 -194771585 + L1ME LINE L1 4216 5473 -627 492 157 207 71 chr3 32753620 32753760 -194770818 - MER3 DNA MER1_type -1 208 50 282 337 0 0 chr3 32753884 32753970 -194770608 + MIR SINE MIR 176 261 -1 180 0 0 0 chr3 32756300 32756320 -194768258 + (A)n Simple_repeat Simple_repeat 1 20 0 968 259 99 51 chr3 32756431 32756998 -194767580 + HAL1b LINE L1 311 904 -444 234 0 0 0 chr3 32759206 32759232 -194765346 + (T)n Simple_repeat Simple_repeat 1 26 0 180 0 0 0 chr3 32759256 32759276 -194765302 + (A)n Simple_repeat Simple_repeat 1 20 0 764 191 27 32 chr3 32760185 32760373 -194764205 + MER5A DNA MER1_type 1 187 -2 1041 211 9 52 chr3 32760385 32760617 -194763961 - MER58A DNA MER1_type -2 222 1 2032 159 0 6 chr3 32760696 32761010 -194763568 - AluJo SINE Alu 0 312 1 2240 299 115 48 chr3 32761020 32762194 -194762384 - HAL1 LINE L1 -221 2286 1192 2100 135 0 16 chr3 32762194 32762506 -194762072 + AluSx SINE Alu 5 311 -1 2240 299 115 48 chr3 32762506 32763473 -194761105 - HAL1 LINE L1 -1315 1192 2 24 32 0 0 chr3 32766052 32766083 -194758495 + AT_rich Low_complexity Low_complexity 1 31 0 306 0 0 0 chr3 32767177 32767211 -194757367 + (TA)n Simple_repeat Simple_repeat 2 35 0 1744 169 11 4 chr3 32767211 32767489 -194757089 - AluJb SINE Alu -27 285 6 3463 171 20 5 chr3 32767643 32768296 -194756282 + L1MB7 LINE L1 5505 6167 -17 1639 184 7 26 chr3 32768308 32768617 -194755961 + AluJo SINE Alu 1 303 -9 1915 187 68 35 chr3 32769252 32769369 -194755209 + MLT1D LTR MaLR 3 115 -390 1981 122 14 0 chr3 32769369 32769498 -194755080 + AluSx SINE Alu 1 127 -179 324 0 0 0 chr3 32769498 32769534 -194755044 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1981 122 14 0 chr3 32769534 32769706 -194754872 + AluSx SINE Alu 127 306 0 1915 187 68 35 chr3 32769706 32770074 -194754504 + MLT1D LTR MaLR 115 505 0 2236 87 3 50 chr3 32771237 32771560 -194753018 + AluSp SINE Alu 1 308 -5 1301 313 34 2 chr3 32771606 32772018 -194752560 + MLT1J2 LTR MaLR 1 425 -25 251 321 15 53 chr3 32772197 32772328 -194752250 - MARNA DNA Mariner -393 193 68 306 290 21 0 chr3 32772920 32773013 -194751565 + MIR SINE MIR 110 204 -58 991 128 7 0 chr3 32773018 32773159 -194751419 + AluSq/x SINE Alu 1 142 -171 228 35 0 0 chr3 32773259 32773288 -194751290 + (CA)n Simple_repeat Simple_repeat 1 29 0 261 0 0 0 chr3 32774080 32774109 -194750469 + (T)n Simple_repeat Simple_repeat 1 29 0 273 298 25 83 chr3 32775633 32775754 -194748824 - L2 LINE L2 -25 3247 3134 533 345 114 30 chr3 32775905 32776429 -194748149 - L2 LINE L2 -452 2862 2295 248 33 0 0 chr3 32776801 32776831 -194747747 + L1MA1 LINE L1 5893 5922 -380 312 197 4 0 chr3 32776835 32776901 -194747677 + Alu SINE Alu 1 48 -255 231 114 0 0 chr3 32777453 32777488 -194747090 + (CA)n Simple_repeat Simple_repeat 1 35 0 231 289 24 0 chr3 32777972 32778055 -194746523 + (TATATG)n Simple_repeat Simple_repeat 2 86 0 2224 115 3 0 chr3 32780408 32780704 -194743874 - AluSx SINE Alu -15 297 1 378 291 103 12 chr3 32781815 32781980 -194742598 - MIR SINE MIR -10 252 73 431 305 75 25 chr3 32782498 32782698 -194741880 - MLT1L LTR MaLR -5 610 401 253 250 0 0 chr3 32782796 32782866 -194741712 - MLT1L LTR MaLR -333 178 115 235 225 25 75 chr3 32782813 32782893 -194741685 - LTR67 LTR ERVL -385 172 97 * 1819 155 11 0 chr3 32783793 32784070 -194740508 + AluJb SINE Alu 6 285 -27 287 281 182 8 chr3 32784536 32784657 -194739921 + MIR3 SINE MIR 67 208 0 380 322 17 0 chr3 32785061 32785176 -194739402 - L2 LINE L2 0 3272 3156 1040 224 168 12 chr3 32785347 32785669 -194738909 + L1ME1 LINE L1 5790 6161 -5 249 255 0 122 chr3 32787834 32787876 -194736702 - MIR SINE MIR -105 103 78 1771 164 44 30 chr3 32787876 32788242 -194736336 - THE1C LTR MaLR 0 375 5 249 255 0 122 chr3 32788242 32788297 -194736281 - MIR SINE MIR -130 78 18 23 33 0 0 chr3 32789502 32789532 -194735046 + AT_rich Low_complexity Low_complexity 1 30 0 290 172 0 52 chr3 32789589 32789647 -194734931 + L2 LINE L2 3259 3313 0 379 254 170 38 chr3 32789798 32789967 -194734611 + MIR3 SINE MIR 5 186 -52 584 323 20 31 chr3 32790896 32791150 -194733428 - MIR SINE MIR -10 252 2 1261 235 100 32 chr3 32791338 32791900 -194732678 + L1MC5 LINE L1 6929 7528 -433 182 88 0 29 chr3 32791925 32791959 -194732619 + (TA)n Simple_repeat Simple_repeat 2 34 0 2637 86 5 21 chr3 32791969 32792342 -194732236 - L1PA8A LINE L1 -9 6122 5756 348 261 170 20 chr3 32793444 32793597 -194730981 + MER5B DNA MER1_type 3 178 0 210 326 177 17 chr3 32793797 32793978 -194730600 + MIR SINE MIR 34 243 -19 23 0 0 0 chr3 32794214 32794237 -194730341 + AT_rich Low_complexity Low_complexity 1 23 0 1806 269 56 5 chr3 32795041 32795617 -194728961 + L1ME3A LINE L1 5566 6170 0 2206 112 3 0 chr3 32796059 32796353 -194728225 - AluSg SINE Alu -15 295 1 749 245 80 24 chr3 32796838 32797050 -194727528 + MER58A DNA MER1_type 1 224 0 682 239 96 10 chr3 32797567 32797764 -194726814 - MIR SINE MIR 0 262 49 627 251 54 67 chr3 32797816 32797856 -194726722 - MER58A DNA MER1_type -2196 224 185 2021 153 3 0 chr3 32797856 32798164 -194726414 + AluSx SINE Alu 1 309 -3 627 251 54 67 chr3 32798164 32798346 -194726232 - MER58A DNA MER1_type -2235 185 5 218 344 141 25 chr3 32799023 32799186 -194725392 + MER91A DNA MER1_type 2 183 -13 2259 173 18 43 chr3 32800454 32800893 -194723685 + MSTA LTR MaLR 1 428 0 371 335 115 0 chr3 32800931 32801131 -194723447 - L2 LINE L2 0 3313 3091 1253 156 25 0 chr3 32802559 32802758 -194721820 - Tigger5 DNA MER2_type 0 2323 2120 1111 160 0 6 chr3 32802775 32802944 -194721634 + AluJb SINE Alu 129 296 -16 981 129 14 0 chr3 32802965 32803112 -194721466 - L1MA3 LINE L1 0 6305 6157 42836 59 7 1 chr3 32803127 32809178 -194715400 + L1PA4 LINE L1 11 6096 -59 224 327 160 40 chr3 32809463 32809613 -194714965 - L2 LINE L2 -188 3084 2917 389 327 80 24 chr3 32809706 32809957 -194714621 - L2 LINE L2 -556 2758 2494 2533 62 13 0 chr3 32810348 32810652 -194713926 - AluY SINE Alu -3 308 1 228 246 18 0 chr3 32811018 32811075 -194713503 - MIR SINE MIR -76 186 129 489 296 83 29 chr3 32813369 32813609 -194710969 + MIR SINE MIR 10 262 0 1919 196 42 11 chr3 32814398 32814776 -194709802 + MLT1B LTR MaLR 1 390 0 292 286 75 38 chr3 32815293 32815426 -194709152 + MIR3 SINE MIR 65 202 -6 716 236 89 29 chr3 32817451 32817697 -194706881 + MIR SINE MIR 2 262 0 189 0 0 0 chr3 32817862 32817883 -194706695 + (A)n Simple_repeat Simple_repeat 1 21 0 717 250 65 34 chr3 32818644 32818980 -194705598 - LTR33A LTR ERVL -2 521 140 331 111 0 19 chr3 32819121 32819175 -194705403 + LTR33A LTR ERVL 6 58 -465 414 236 142 20 chr3 32819374 32819465 -194705113 + MIR SINE MIR 2 81 -181 2004 199 40 0 chr3 32819465 32819816 -194704762 + MLT1A1 LTR MaLR 1 365 0 414 236 142 20 chr3 32819816 32819872 -194704706 + MIR SINE MIR 81 167 -95 612 268 41 21 chr3 32820653 32820847 -194703731 + MIR SINE MIR 65 262 0 243 0 0 0 chr3 32821667 32821694 -194702884 + (T)n Simple_repeat Simple_repeat 1 27 0 1880 107 4 0 chr3 32822448 32822701 -194701877 - AluSg SINE Alu -14 296 43 488 262 32 8 chr3 32823198 32823324 -194701254 + MER91B DNA MER1_type 2 130 -60 333 199 253 54 chr3 32823477 32823531 -194701047 + Charlie4 DNA MER1_type 32 74 -1887 1516 147 0 13 chr3 32823531 32823763 -194700815 - AluJb SINE Alu -83 229 1 333 199 253 54 chr3 32823763 32823874 -194700704 + Charlie4 DNA MER1_type 74 230 -1731 463 226 88 0 chr3 32823916 32824018 -194700560 + Charlie4 DNA MER1_type 1830 1940 -21 201 39 0 0 chr3 32824020 32824046 -194700532 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2110 110 0 23 chr3 32824971 32825270 -194699308 + AluSx SINE Alu 1 292 -20 261 174 22 0 chr3 32825270 32825316 -194699262 + Tigger5 DNA MER2_type 8 54 -2269 * 342 188 29 14 chr3 32825287 32825356 -194699222 + Tigger5 DNA MER2_type 2251 2320 -3 394 164 52 112 chr3 32825394 32825510 -194699068 + Tigger5 DNA MER2_type 2215 2323 0 3924 178 43 1 chr3 32826315 32827052 -194697526 + L1MB7 LINE L1 5417 6184 0 207 211 140 0 chr3 32827463 32827520 -194697058 - MIR SINE MIR -108 154 90 1088 279 73 18 chr3 32828715 32829098 -194695480 + L2 LINE L2 2365 2768 -546 282 277 297 15 chr3 32829173 32829368 -194695210 - MIR SINE MIR 0 262 13 180 176 0 0 chr3 32830785 32830819 -194693759 + GA-rich Low_complexity Low_complexity 3 36 0 1714 149 30 37 chr3 32831369 32831665 -194692913 + AluSx SINE Alu 4 297 -15 1290 213 5 0 chr3 32832067 32832288 -194692290 + MER58A DNA MER1_type 3 224 0 1017 338 69 28 chr3 32832489 32832700 -194691878 - L3 LINE CR1 -137 1440 1239 2270 125 3 0 chr3 32832700 32833011 -194691567 - AluSx SINE Alu 0 312 1 1017 338 69 28 chr3 32833011 32833308 -194691270 - L3 LINE CR1 -338 1239 911 2266 84 19 23 chr3 32833393 32833702 -194690876 - AluY SINE Alu -3 308 1 2429 91 3 0 chr3 32833750 32834058 -194690520 - AluSg SINE Alu -1 309 1 1050 313 29 8 chr3 32834234 32834617 -194689961 + MLT1I LTR MaLR 17 407 -2 316 196 147 69 chr3 32834633 32834735 -194689843 - L2 LINE L2 0 3313 3204 262 368 8 17 chr3 32834860 32834977 -194689601 + MIR SINE MIR 19 134 -74 196 339 51 42 chr3 32834991 32835109 -194689469 - L3 LINE CR1 -69 1508 1390 221 249 142 91 chr3 32835364 32835561 -194689017 - L2 LINE L2 -217 3055 2849 456 325 11 43 chr3 32836547 32836735 -194687843 - MIR SINE MIR -46 216 35 627 274 21 52 chr3 32836914 32837202 -194687376 + Charlie8 DNA MER1_type 47 261 -2156 285 269 10 58 chr3 32837269 32837373 -194687205 + MIR SINE MIR 58 156 -106 507 337 72 54 chr3 32837491 32837823 -194686755 + LTR67 LTR ERVL 149 486 -71 1325 193 86 82 chr3 32837931 32838053 -194686525 - MER69 DNA AcHobo -12 2514 2394 1929 159 0 3 chr3 32838053 32838349 -194686229 + AluJo SINE Alu 3 297 -15 1325 193 86 82 chr3 32838349 32838764 -194685814 - MER69 DNA AcHobo -132 2394 1975 30 45 0 0 chr3 32838915 32838959 -194685619 + AT_rich Low_complexity Low_complexity 1 44 0 1462 134 22 5 chr3 32838960 32839184 -194685394 - L1PA16 LINE L1 -9 6157 5930 732 112 0 0 chr3 32839319 32839426 -194685152 - L1PA16 LINE L1 -296 5870 5764 254 345 11 0 chr3 32839432 32839519 -194685059 - MER20B DNA MER1_type -580 203 116 839 271 110 3 chr3 32839538 32839830 -194684748 - MER69 DNA AcHobo -900 326 4 2065 122 0 17 chr3 32839953 32840247 -194684331 - AluSx SINE Alu -23 289 1 289 292 31 10 chr3 32841198 32841294 -194683284 - MIR3 SINE MIR -30 178 81 218 133 0 22 chr3 32841607 32841652 -194682926 + (GGAA)n Simple_repeat Simple_repeat 3 46 0 2083 133 3 7 chr3 32845764 32846066 -194678512 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr3 32846190 32846211 -194678367 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr3 32846939 32846972 -194677606 + AT_rich Low_complexity Low_complexity 1 33 0 1118 255 106 37 chr3 32847190 32847700 -194676878 - MLT1H LTR MaLR -4 545 1 262 231 111 75 chr3 32848219 32848418 -194676160 + HAL1 LINE L1 798 1003 -1504 4349 139 8 3 chr3 32849223 32849855 -194674723 - MER41B LTR ERV1 0 635 1 1249 276 74 72 chr3 32851076 32851170 -194673408 + HAL1 LINE L1 1088 1180 -1327 2268 35 0 0 chr3 32851170 32851428 -194673150 - L1PA4 LINE L1 -3 6152 5895 1249 276 74 72 chr3 32851428 32852120 -194672458 + HAL1 LINE L1 1180 1875 -632 351 298 109 37 chr3 32852216 32852565 -194672013 + HAL1 LINE L1 2019 2392 -115 2009 159 0 0 chr3 32852566 32852868 -194671710 + AluSx SINE Alu 1 302 -10 36014 65 5 4 chr3 32852880 32859022 -194665556 + L1PA5 LINE L1 1 6154 0 689 248 74 41 chr3 32859343 32859585 -194664993 + MIR SINE MIR 13 262 0 248 206 16 32 chr3 32860321 32860384 -194664194 + U7 snRNA snRNA 1 62 -1 239 237 169 0 chr3 32861322 32861381 -194663197 - L2 LINE L2 -59 3254 3186 1090 318 92 11 chr3 32861789 32862236 -194662342 + L2 LINE L2 2831 3313 0 351 0 0 0 chr3 32862425 32862464 -194662114 + (CA)n Simple_repeat Simple_repeat 2 40 0 2226 156 23 0 chr3 32863530 32863920 -194660658 + MER57A LTR ERV1 1 399 -4 607 322 99 23 chr3 32865904 32865946 -194658632 + L2 LINE L2 2987 3024 -289 1175 194 19 5 chr3 32865946 32866162 -194658416 + MER20 DNA MER1_type 1 219 0 607 322 99 23 chr3 32866162 32866423 -194658155 + L2 LINE L2 3024 3313 0 304 237 37 74 chr3 32866792 32866927 -194657651 + MLT1L LTR MaLR 205 334 -281 293 200 80 72 chr3 32866930 32867055 -194657523 + MLT1J LTR MaLR 386 511 0 441 0 0 0 chr3 32867353 32867402 -194657176 + (TG)n Simple_repeat Simple_repeat 2 50 0 243 350 43 8 chr3 32867550 32867667 -194656911 + L2 LINE L2 3137 3257 -15 2547 80 0 0 chr3 32869713 32870015 -194654563 + AluSg SINE Alu 1 302 -8 413 264 70 30 chr3 32870258 32870459 -194654119 - MLT1H LTR MaLR -57 492 284 186 341 24 63 chr3 32871143 32871269 -194653309 - L2 LINE L2 -11 3261 3141 246 350 0 88 chr3 32871447 32871584 -194652994 - L2 LINE L2 -2122 1192 1068 210 247 221 13 chr3 32872471 32872548 -194652030 + MIR SINE MIR 40 132 -130 32 26 0 0 chr3 32872622 32872661 -194651917 + AT_rich Low_complexity Low_complexity 1 39 0 583 254 240 33 chr3 32872733 32873095 -194651483 - Charlie7 DNA MER1_type -2121 491 55 784 210 132 6 chr3 32873102 32873269 -194651309 - MER5A DNA MER1_type -1 188 1 515 270 102 58 chr3 32874076 32874574 -194650004 - MLT1G1 LTR MaLR -2 593 23 707 243 29 33 chr3 32874849 32875059 -194649519 + L2 LINE L2 3103 3311 -2 237 225 38 12 chr3 32875569 32875649 -194648929 + CT-rich Low_complexity Low_complexity 4 85 0 591 180 0 0 chr3 32876621 32876721 -194647857 - 5S rRNA rRNA -21 100 1 310 297 70 57 chr3 32877139 32877322 -194647256 + MIR SINE MIR 9 192 -70 230 366 0 0 chr3 32877325 32877396 -194647182 - L2 LINE L2 -2 3270 3200 741 274 37 14 chr3 32879272 32879487 -194645091 + MIR SINE MIR 22 241 -21 213 39 0 0 chr3 32879826 32879852 -194644726 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 236 338 14 14 chr3 32880522 32880596 -194643982 - MIR3 SINE MIR -33 175 102 28783 115 14 54 chr3 32880842 32887254 -194637324 - L1PA7 LINE L1 0 6154 12 1805 268 107 30 chr3 32887591 32888616 -194635962 + L2 LINE L2 2192 3311 -2 238 182 0 18 chr3 32888693 32888748 -194635830 - Charlie4 DNA MER1_type -25 1936 1883 252 366 136 0 chr3 32888845 32889036 -194635542 - L2 LINE L2 -348 2966 2750 297 75 0 0 chr3 32889514 32889554 -194635024 + (T)n Simple_repeat Simple_repeat 1 40 0 1040 171 49 0 chr3 32889575 32889739 -194634839 - AluJb SINE Alu -140 172 1 1803 253 87 13 chr3 32889785 32890334 -194634244 - MLT1G LTR MaLR 0 590 1 263 362 16 16 chr3 32890528 32890655 -194633923 - MIR SINE MIR -66 142 16 1504 187 73 33 chr3 32891861 32892161 -194632417 + AluJb SINE Alu 1 312 0 290 269 85 54 chr3 32893526 32893656 -194630922 - L2 LINE L2 -1 3312 3179 495 275 20 13 chr3 32893660 32893809 -194630769 - L2 LINE L2 -2 3311 3162 2249 79 21 0 chr3 32893968 32894258 -194630320 + AluSp SINE Alu 1 296 -17 240 228 0 63 chr3 32894262 32894341 -194630237 + L1MC/D LINE L1 5696 5769 -2039 210 259 0 19 chr3 32894400 32894454 -194630124 + (TATG)n Simple_repeat Simple_repeat 1 53 0 715 282 167 30 chr3 32895067 32895439 -194629139 - MLT1D LTR MaLR 0 505 83 * 768 184 7 0 chr3 32895437 32895573 -194629005 + MSTD LTR MaLR 10 146 -250 252 223 21 64 chr3 32895590 32895684 -194628894 - MLT1D LTR MaLR -415 90 1 180 219 0 0 chr3 32896063 32896104 -194628474 - L2 LINE L2 -1 3312 3272 180 236 194 21 chr3 32896123 32896267 -194628311 - L2 LINE L2 -124 3189 3021 1400 263 51 99 chr3 32896349 32896528 -194628050 - L2 LINE L2 -435 2879 2693 1048 168 91 0 chr3 32896528 32896725 -194627853 - MER20 DNA MER1_type -4 215 1 1400 263 51 99 chr3 32896725 32896867 -194627711 - L2 LINE L2 -621 2693 2546 1875 173 0 13 chr3 32896867 32897174 -194627404 + AluJb SINE Alu 1 303 -9 1400 263 51 99 chr3 32897174 32897726 -194626852 - L2 LINE L2 -768 2546 2047 633 247 259 13 chr3 32898668 32898984 -194625594 - LTR33 LTR ERVL -14 507 114 1084 247 25 4 chr3 32900167 32900410 -194624168 + MIR SINE MIR 13 260 -2 216 0 0 0 chr3 32901344 32901368 -194623210 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 389 187 13 0 chr3 32902106 32902181 -194622397 - MIR3 SINE MIR -17 191 116 232 329 47 0 chr3 32903707 32903792 -194620786 + MIR SINE MIR 52 140 -68 194 289 58 0 chr3 32903985 32904037 -194620541 - L2 LINE L2 -77 3195 3141 460 231 42 28 chr3 32904069 32904212 -194620366 + MER104 DNA Tc2 32 176 -4 750 254 100 17 chr3 32905658 32905898 -194618680 + MIR SINE MIR 2 261 -1 958 174 11 58 chr3 32906016 32906206 -194618372 + MER5A DNA MER1_type 7 187 -2 2321 95 0 7 chr3 32906901 32907205 -194617373 + AluSx SINE Alu 1 302 -10 223 296 122 41 chr3 32907482 32907580 -194616998 - MIR SINE MIR -63 145 40 378 185 0 49 chr3 32907856 32907937 -194616641 + MER3 DNA MER1_type 5 81 -128 30 18 0 54 chr3 32907937 32907973 -194616605 + AT_rich Low_complexity Low_complexity 1 35 -18 2359 87 0 7 chr3 32907973 32908272 -194616306 + AluSq SINE Alu 1 297 -16 30 18 0 54 chr3 32908272 32908291 -194616287 + AT_rich Low_complexity Low_complexity 35 53 0 267 237 17 0 chr3 32908594 32908653 -194615925 + CT-rich Low_complexity Low_complexity 2 61 0 24 0 0 0 chr3 32909965 32909989 -194614589 + AT_rich Low_complexity Low_complexity 1 24 0 282 226 0 0 chr3 32910338 32910400 -194614178 + MLT1K LTR MaLR 506 567 -21 304 313 100 51 chr3 32910412 32910917 -194613661 - L2 LINE L2 -128 3144 2566 562 228 48 18 chr3 32913726 32913893 -194610685 + MIR SINE MIR 66 237 -25 223 441 26 7 chr3 32913969 32914121 -194610457 - L2 LINE L2 0 3272 3118 903 182 0 0 chr3 32914381 32914535 -194610043 + MLT1A1 LTR MaLR 1 154 -211 473 179 0 12 chr3 32914539 32914623 -194609955 + FLAM_A SINE Alu 1 83 -59 1051 165 37 0 chr3 32914645 32914833 -194609745 + MLT1A1 LTR MaLR 170 364 -1 220 259 0 0 chr3 32915110 32915164 -194609414 - L2 LINE L2 -10 3303 3250 16697 164 31 10 chr3 32915232 32921955 -194602623 - L1PB1 LINE L1 -2 6865 3 248 336 129 9 chr3 32922135 32922251 -194602327 + MIR3 SINE MIR 76 205 -3 236 310 108 0 chr3 32923331 32923460 -194601118 - MIR SINE MIR -118 144 2 280 293 18 93 chr3 32923719 32923999 -194600579 + MLT1J LTR MaLR 99 357 -154 597 272 17 64 chr3 32924248 32924483 -194600095 + MIR SINE MIR 39 262 0 221 118 0 39 chr3 32925249 32925300 -194599278 + (TAAAAA)n Simple_repeat Simple_repeat 5 53 0 532 282 67 29 chr3 32925872 32926159 -194598419 + L1ME LINE L1 749 1066 -5004 2174 118 7 3 chr3 32926159 32926463 -194598115 - AluSx SINE Alu -7 305 1 532 282 67 29 chr3 32926463 32926612 -194597966 + L1ME LINE L1 1066 1208 -4862 5768 79 8 15 chr3 32926683 32927270 -194597308 + L1MA1 LINE L1 5486 6068 -234 2233 105 7 0 chr3 32927270 32927566 -194597012 + AluSg SINE Alu 1 298 -12 5768 79 8 15 chr3 32927566 32927797 -194596781 + L1MA1 LINE L1 6068 6299 -3 198 0 0 0 chr3 32928274 32928296 -194596282 + (A)n Simple_repeat Simple_repeat 1 22 0 190 207 103 35 chr3 32928979 32929037 -194595541 - L2 LINE L2 -14 3258 3197 816 144 0 0 chr3 32929624 32929742 -194594836 + FLAM_C SINE Alu 1 118 -25 694 230 94 0 chr3 32929989 32930180 -194594398 - MER3 DNA MER1_type 0 209 1 1866 183 20 50 chr3 32930709 32931109 -194593469 - MLT1B LTR MaLR 0 390 3 1053 216 44 20 chr3 32932218 32932514 -194592064 + LTR16C LTR ERVL 187 489 -2 1572 129 276 18 chr3 32932602 32932942 -194591636 - MSTA LTR MaLR 0 428 1 207 191 0 24 chr3 32933124 32933141 -194591437 + (CAA)n Simple_repeat Simple_repeat 2 18 -24 2121 116 0 0 chr3 32933141 32933425 -194591153 + AluSg SINE Alu 1 284 -26 207 191 0 24 chr3 32933425 32933449 -194591129 + (CAA)n Simple_repeat Simple_repeat 18 42 0 454 266 0 24 chr3 32935081 32935205 -194589373 - MER63A DNA MER1_type -36 174 54 1622 239 173 9 chr3 32935397 32936068 -194588510 - MER20B DNA MER1_type 0 784 4 540 200 57 91 chr3 32936987 32937125 -194587453 - L1ME3A LINE L1 0 6170 6042 2338 98 3 16 chr3 32937125 32937442 -194587136 + AluSp SINE Alu 1 313 0 540 200 57 91 chr3 32937442 32937533 -194587045 - L1ME3A LINE L1 -128 6042 5949 1820 227 25 57 chr3 32937533 32938173 -194586405 - L1ME3A LINE L1 -183 5987 5371 2910 212 29 60 chr3 32938277 32939240 -194585338 - L1ME1 LINE L1 -5 6161 5254 2094 102 0 0 chr3 32939240 32939505 -194585073 - AluSq SINE Alu -24 289 25 2910 212 29 60 chr3 32939505 32939863 -194584715 - L1ME1 LINE L1 -912 5254 4887 413 327 133 41 chr3 32940182 32940497 -194584081 - L2 LINE L2 0 3313 2970 1562 186 36 25 chr3 32940497 32940777 -194583801 + AluJb SINE Alu 1 283 -29 820 209 71 33 chr3 32940930 32941141 -194583437 - MER58A DNA MER1_type -5 219 1 2095 115 70 48 chr3 32941744 32942100 -194582478 + THE1B LTR MaLR 1 364 0 872 246 126 39 chr3 32942206 32942620 -194581958 - MLT1J LTR MaLR -40 471 22 280 283 29 102 chr3 32942755 32942960 -194581618 - MIR SINE MIR -60 202 13 729 216 196 4 chr3 32942992 32943247 -194581331 - MER31B LTR ERV1 0 485 180 1055 241 48 58 chr3 32943269 32943743 -194580835 - MER39 LTR ERV1 -20 687 4 599 196 19 32 chr3 32943748 32943906 -194580672 - MER31B LTR ERV1 -310 156 1 180 111 0 0 chr3 32944475 32944502 -194580076 + (TG)n Simple_repeat Simple_repeat 2 28 0 374 258 0 19 chr3 32945100 32945255 -194579323 + (TGGA)n Simple_repeat Simple_repeat 1 152 0 2087 97 37 10 chr3 32945790 32946090 -194578488 - AluSg SINE Alu -2 308 1 796 246 98 5 chr3 32946097 32946300 -194578278 - MIR SINE MIR -39 223 2 716 167 39 26 chr3 32946337 32946493 -194578085 + MER3 DNA MER1_type 5 162 -47 1050 215 18 5 chr3 32947279 32947498 -194577080 + MER58A DNA MER1_type 1 222 -2 384 340 61 21 chr3 32947514 32947865 -194576713 + L1MC4a LINE L1 5540 5790 -331 209 302 63 0 chr3 32947931 32947994 -194576584 + L2 LINE L2 3244 3310 -3 320 204 129 21 chr3 32951562 32951655 -194572923 + MIR SINE MIR 44 146 -62 816 235 40 10 chr3 32951693 32951893 -194572685 - MIR SINE MIR -51 211 6 180 0 0 0 chr3 32955375 32955395 -194569183 + (T)n Simple_repeat Simple_repeat 1 20 0 2547 74 0 3 chr3 32958917 32959227 -194565351 - AluSc SINE Alu 0 309 1 217 195 143 13 chr3 32961321 32961398 -194563180 + MIR SINE MIR 120 206 -56 236 239 141 43 chr3 32961687 32961779 -194562799 + MARNA DNA Mariner 75 175 -411 354 336 32 24 chr3 32961797 32961922 -194562656 - L2 LINE L2 -7 3265 3140 232 284 27 0 chr3 32962003 32962077 -194562501 - MARNA DNA Mariner -259 327 252 580 303 166 14 chr3 32962310 32962726 -194561852 - MLT1H1 LTR MaLR -2 553 75 302 184 103 46 chr3 32962919 32963006 -194561572 - MIR SINE MIR -71 191 100 503 161 154 74 chr3 32963263 32963360 -194561218 - MER5A DNA MER1_type -4 185 68 2327 80 23 0 chr3 32963360 32963659 -194560919 - AluSp SINE Alu -7 306 1 503 161 154 74 chr3 32963659 32963723 -194560855 - MER5A DNA MER1_type -121 68 11 778 266 138 7 chr3 32965208 32965490 -194559088 + MER5C DNA MER1_type 4 322 -2 216 0 0 0 chr3 32966669 32966693 -194557885 + (T)n Simple_repeat Simple_repeat 1 24 0 207 0 0 0 chr3 32966774 32966797 -194557781 + (TA)n Simple_repeat Simple_repeat 1 23 0 * 324 0 0 0 chr3 32966796 32966832 -194557746 + (GA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr3 32967146 32967167 -194557411 + AT_rich Low_complexity Low_complexity 1 21 0 550 276 8 0 chr3 32967219 32967346 -194557232 - MER5B DNA MER1_type -50 128 1 187 308 146 31 chr3 32967354 32967484 -194557094 + L2 LINE L2 3168 3312 -1 483 255 77 48 chr3 32968114 32968322 -194556256 + L1ME4a LINE L1 5495 5708 -413 270 281 148 32 chr3 32968325 32968542 -194556036 + L1ME4a LINE L1 5822 6063 -58 555 361 73 31 chr3 32969060 32969844 -194554734 - L2 LINE L2 -8 3305 2486 411 292 169 13 chr3 32970252 32970406 -194554172 - MER5A DNA MER1_type -3 186 9 2162 92 4 0 chr3 32970541 32970848 -194553730 - AluSx SINE Alu 0 319 12 237 319 58 43 chr3 32970936 32971074 -194553504 + MIR SINE MIR 42 181 -81 1851 162 13 3 chr3 32971724 32972032 -194552546 + AluSq SINE Alu 1 311 -2 1806 258 63 0 chr3 32972679 32973110 -194551468 - MLT1H LTR MaLR 0 549 92 932 94 0 16 chr3 32973157 32973284 -194551294 - FLAM_C SINE Alu -18 125 1 180 309 0 0 chr3 32973437 32973479 -194551099 + L2 LINE L2 3248 3289 -24 2406 85 0 0 chr3 32973494 32973787 -194550791 + AluSc SINE Alu 1 293 -16 34 93 0 0 chr3 32974758 32974855 -194549723 + AT_rich Low_complexity Low_complexity 1 97 0 419 244 98 55 chr3 32975012 32975266 -194549312 - L1ME LINE L1 -297 5824 5560 592 244 155 16 chr3 32976064 32976257 -194548321 + MIR SINE MIR 20 239 -23 184 256 93 0 chr3 32976223 32976266 -194548312 + L2 LINE L2 3251 3297 -16 * 198 0 0 0 chr3 32976290 32976312 -194548266 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2239 68 3 31 chr3 32976314 32976607 -194547971 - AluSp SINE Alu -28 285 1 1084 215 20 0 chr3 32976806 32977001 -194547577 - MER58A DNA MER1_type 0 224 26 381 289 13 15 chr3 32977344 32977523 -194547055 - MLT1H LTR MaLR 0 549 310 1025 322 31 14 chr3 32979394 32979754 -194544824 - MLT1I LTR MaLR -4 405 40 638 316 0 5 chr3 32980333 32980529 -194544049 + L2 LINE L2 3119 3313 0 1940 250 68 77 chr3 32981266 32981866 -194542712 - MLT1G LTR MaLR 0 590 1 860 103 13 77 chr3 32983443 32983598 -194540980 + AluSg/x SINE Alu 150 294 -16 2120 116 0 7 chr3 32983612 32983905 -194540673 + AluSx SINE Alu 1 291 -21 774 237 34 0 chr3 32984541 32984729 -194539849 + MER58B DNA MER1_type 139 338 -3 2610 55 0 0 chr3 32984751 32985061 -194539517 + AluY SINE Alu 1 310 -1 399 224 21 0 chr3 32985132 32985238 -194539340 + MIR SINE MIR 36 147 -76 193 283 0 0 chr3 32985463 32985509 -194539069 - MIR SINE MIR -5 257 212 242 277 75 43 chr3 32985648 32985742 -194538836 + L2 LINE L2 3163 3259 -13 902 254 24 27 chr3 32986179 32986434 -194538144 - MIR SINE MIR 0 262 3 2280 116 3 0 chr3 32986693 32986996 -194537582 - AluSp SINE Alu -9 304 1 441 280 8 17 chr3 32988031 32988149 -194536429 - MLT1H LTR MaLR -376 173 57 460 215 84 28 chr3 32988242 32988349 -194536229 - L2 LINE L2 -2 3311 3199 225 256 147 62 chr3 32988503 32988632 -194535946 + MIR3 SINE MIR 8 147 -61 216 0 0 0 chr3 32988828 32988852 -194535726 + (T)n Simple_repeat Simple_repeat 1 24 0 543 259 21 0 chr3 32988858 32989001 -194535577 - MIR SINE MIR -67 195 50 228 204 0 0 chr3 32990101 32990145 -194534433 - L2 LINE L2 -2 3270 3227 186 198 19 160 chr3 32990172 32990244 -194534334 + L2 LINE L2 3223 3277 -36 2008 194 82 45 chr3 32990244 32990780 -194533798 - LTR38 LTR ERV1 0 556 1 186 198 19 160 chr3 32990780 32990813 -194533765 + L2 LINE L2 3277 3313 0 180 356 35 0 chr3 32991050 32991137 -194533441 - L2 LINE L2 -230 3042 2953 319 269 146 87 chr3 32991292 32991567 -194533011 + L2 LINE L2 3011 3301 -12 391 210 29 123 chr3 32992961 32993099 -194531479 - MLT1J1 LTR MaLR -321 125 1 235 203 25 101 chr3 32993107 32993186 -194531392 - MIR SINE MIR -71 191 119 28 0 0 0 chr3 32994456 32994484 -194530094 + AT_rich Low_complexity Low_complexity 1 28 0 2037 109 27 24 chr3 32994869 32995163 -194529415 - AluSx SINE Alu -17 295 1 269 294 0 101 chr3 32995168 32995287 -194529291 + MIR SINE MIR 156 262 0 29 28 0 0 chr3 32995389 32995425 -194529153 + AT_rich Low_complexity Low_complexity 1 36 0 1186 176 32 23 chr3 32995696 32995912 -194528666 - MER20 DNA MER1_type 0 219 2 2046 102 3 38 chr3 32995916 32996229 -194528349 + AluSq SINE Alu 1 302 -11 339 243 232 22 chr3 32996303 32996488 -194528090 - MIR SINE MIR -8 254 31 2036 111 7 7 chr3 32998017 32998306 -194526272 - AluSx SINE Alu -21 291 3 2082 135 3 3 chr3 32998442 32998746 -194525832 + AluSx SINE Alu 1 304 -8 467 273 100 7 chr3 32999475 32999625 -194524953 + MIR SINE MIR 98 261 -1 29 0 0 0 chr3 32999726 32999755 -194524823 + AT_rich Low_complexity Low_complexity 1 29 0 2155 115 3 0 chr3 32999756 33000042 -194524536 - AluSx SINE Alu -25 287 1 955 142 0 7 chr3 33000056 33000211 -194524367 - AluSg/x SINE Alu -7 303 150 215 288 68 0 chr3 33000569 33000642 -194523936 - L2 LINE L2 -7 3265 3188 1600 194 20 3 chr3 33001270 33001564 -194523014 + AluJb SINE Alu 7 305 -7 2250 87 0 26 chr3 33001585 33001894 -194522684 + AluSg SINE Alu 1 301 -9 22 0 0 0 chr3 33001929 33001951 -194522627 + AT_rich Low_complexity Low_complexity 1 22 0 280 288 117 0 chr3 33002894 33003005 -194521573 + L2 LINE L2 3140 3263 -9 877 193 24 70 chr3 33003050 33003192 -194521386 + MER3 DNA MER1_type 1 131 -78 2300 93 0 7 chr3 33003192 33003528 -194521050 - AluSg SINE Alu 0 310 1 877 193 24 70 chr3 33003528 33003598 -194520980 + MER3 DNA MER1_type 131 203 -6 1064 118 12 17 chr3 33004116 33005329 -194519249 - HSATII Satellite Satellite -9 1207 1 878 116 5 0 chr3 33005352 33005791 -194518787 - HSATII Satellite Satellite -9 441 1 1802 163 28 0 chr3 33006334 33006622 -194517956 - AluJb SINE Alu -16 296 1 923 112 19 14 chr3 33007049 33007745 -194516833 - HSATII Satellite Satellite 0 699 1 899 130 3 17 chr3 33007775 33008125 -194516453 - HSATII Satellite Satellite -148 345 1 907 105 13 19 chr3 33008152 33008470 -194516108 - HSATII Satellite Satellite 0 316 1 724 126 19 19 chr3 33008495 33008654 -194515924 - HSATII Satellite Satellite 0 170 12 789 149 0 0 chr3 33008811 33009185 -194515393 + (GAATG)n Satellite Satellite 1 374 0 1092 101 0 0 chr3 33009197 33009375 -194515203 + (GAATG)n Satellite Satellite 2 179 0 1119 125 3 3 chr3 33009403 33009721 -194514857 + (GAATG)n Satellite Satellite 1 318 0 522 103 0 0 chr3 33009736 33009823 -194514755 + (GAATG)n Satellite Satellite 5 91 0 956 117 8 14 chr3 33009988 33011069 -194513509 - HSATII Satellite Satellite -31 1075 1 193 317 0 0 chr3 33011652 33011693 -194512885 + MIR SINE MIR 35 75 -187 309 237 13 13 chr3 33011837 33011913 -194512665 - MIR SINE MIR -60 202 127 704 216 95 0 chr3 33012401 33012549 -194512029 - MER5A DNA MER1_type -25 164 3 236 309 0 0 chr3 33012549 33012604 -194511974 - Charlie8 DNA MER1_type -2228 189 135 283 261 37 90 chr3 33012741 33012875 -194511703 - Charlie8 DNA MER1_type -2290 127 1 968 256 58 0 chr3 33013359 33013601 -194510977 - MIR SINE MIR 0 262 7 1260 156 51 78 chr3 33013972 33014051 -194510527 - MER33 DNA MER1_type -2261 324 244 2477 71 3 0 chr3 33014051 33014361 -194510217 - AluY SINE Alu 0 311 1 1260 156 51 78 chr3 33014361 33014614 -194509964 - MER33 DNA MER1_type -2341 244 1 21 71 0 0 chr3 33015026 33015068 -194509510 + AT_rich Low_complexity Low_complexity 1 42 0 1469 184 103 3 chr3 33015999 33016309 -194508269 + MER58B DNA MER1_type 1 341 0 220 266 94 16 chr3 33018019 33018083 -194506495 - L2 LINE L2 -3 3269 3201 24 67 0 0 chr3 33022216 33022261 -194502317 + AT_rich Low_complexity Low_complexity 1 45 0 767 171 17 97 chr3 33023100 33023171 -194501407 - MER45A DNA AcHobo -1405 176 101 1943 141 3 13 chr3 33023171 33023470 -194501108 + AluSq SINE Alu 1 296 -17 767 171 17 97 chr3 33023470 33023573 -194501005 - MER45A DNA AcHobo -1480 101 16 22 35 0 0 chr3 33024496 33024525 -194500053 + AT_rich Low_complexity Low_complexity 1 29 0 465 19 0 0 chr3 33025764 33025818 -194498760 + (CA)n Simple_repeat Simple_repeat 2 55 0 623 263 80 10 chr3 33026415 33026626 -194497952 - MIR SINE MIR 0 262 40 2240 70 11 3 chr3 33028409 33028719 -194495859 - AluSp SINE Alu 0 312 1 291 299 86 32 chr3 33029073 33029260 -194495318 - MIR3 SINE MIR -6 202 6 589 287 111 21 chr3 33029403 33029790 -194494788 - MER113 DNA MER1_type? -47 474 53 912 183 21 83 chr3 33031142 33031431 -194493147 - LTR37B LTR ERV1 0 468 198 319 267 29 9 chr3 33031489 33031594 -194492984 - LTR37B LTR ERV1 -293 175 69 1066 235 0 0 chr3 33031599 33031803 -194492775 + MER3 DNA MER1_type 6 209 0 275 263 13 0 chr3 33031803 33031872 -194492706 - LTR37B LTR ERV1 -392 76 7 2167 109 6 37 chr3 33031987 33032309 -194492269 - AluSx SINE Alu 0 312 1 268 280 20 70 chr3 33034364 33034464 -194490114 + MLT1L LTR MaLR 437 531 -84 411 318 31 51 chr3 33035344 33035539 -194489039 - MIR3 SINE MIR 0 208 18 1177 292 67 43 chr3 33035598 33036105 -194488473 - MLT1K LTR MaLR 0 588 70 679 235 22 123 chr3 33036246 33036301 -194488277 - MIR SINE MIR 0 262 203 2010 81 55 68 chr3 33036301 33036609 -194487969 - AluSq SINE Alu -9 304 1 679 235 22 123 chr3 33036609 33036821 -194487757 - MIR SINE MIR -59 203 22 1306 101 0 0 chr3 33037639 33037807 -194486771 + AluSg/x SINE Alu 139 306 -6 1684 170 0 33 chr3 33037854 33038160 -194486418 + AluJb SINE Alu 1 296 -16 824 245 13 0 chr3 33038165 33038320 -194486258 - MER58A DNA MER1_type 0 157 1 225 356 58 0 chr3 33038681 33038768 -194485810 + L2 LINE L2 3140 3231 -41 22 0 0 0 chr3 33040421 33040443 -194484135 + AT_rich Low_complexity Low_complexity 1 22 0 346 352 57 12 chr3 33040632 33040879 -194483699 + MIR SINE MIR 1 258 -4 232 224 0 0 chr3 33041673 33041722 -194482856 - MIR SINE MIR -139 123 75 2064 126 0 7 chr3 33041872 33042166 -194482412 + AluSx SINE Alu 1 292 -20 520 284 50 23 chr3 33042210 33042428 -194482150 - MER113 DNA MER1_type? 0 521 298 594 199 147 6 chr3 33042467 33042623 -194481955 - MER58A DNA MER1_type 0 224 47 2481 70 3 6 chr3 33042649 33042961 -194481617 - AluY SINE Alu 0 311 1 632 204 94 25 chr3 33042966 33043167 -194481411 - MER113 DNA MER1_type? -306 215 1 814 232 76 31 chr3 33043469 33043693 -194480885 + MIR SINE MIR 8 241 -21 187 336 93 21 chr3 33044029 33044169 -194480409 + L2 LINE L2 2827 2976 -337 1853 130 34 31 chr3 33044538 33044891 -194479687 + AluSg SINE Alu 1 354 0 225 0 0 0 chr3 33045192 33045217 -194479361 + (CA)n Simple_repeat Simple_repeat 2 26 0 427 210 92 8 chr3 33045217 33045336 -194479242 - MER104 DNA Tc2 -5 175 47 1994 238 66 29 chr3 33046763 33047355 -194477223 + L1ME3 LINE L1 5448 6061 -101 1980 175 0 0 chr3 33048148 33048457 -194476121 - AluSx SINE Alu -3 309 1 21 0 0 0 chr3 33048467 33048488 -194476090 + AT_rich Low_complexity Low_complexity 1 21 0 4376 187 39 19 chr3 33048814 33049698 -194474880 + L1MB7 LINE L1 5283 6183 -1 2264 234 70 37 chr3 33050320 33051068 -194473510 - L1ME2 LINE L1 -9 6155 5384 21 0 0 0 chr3 33051068 33051089 -194473489 + AT_rich Low_complexity Low_complexity 1 21 0 1208 179 61 5 chr3 33051519 33051731 -194472847 + MER58A DNA MER1_type 1 224 0 406 268 105 13 chr3 33052090 33052243 -194472335 - MARNA DNA Mariner -329 257 91 428 279 58 13 chr3 33053163 33053317 -194471261 + MIR3 SINE MIR 21 181 -27 281 237 0 0 chr3 33053588 33053647 -194470931 - MIR SINE MIR -114 148 90 232 326 21 42 chr3 33054965 33055109 -194469469 - MIR SINE MIR -67 141 3 350 147 15 0 chr3 33056126 33056194 -194468384 + CT-rich Low_complexity Low_complexity 3 71 0 2136 123 3 19 chr3 33056242 33056559 -194468019 - AluSx SINE Alu 0 312 1 670 257 38 105 chr3 33057044 33057464 -194467114 - L2 LINE L2 0 3313 2922 596 319 112 50 chr3 33057443 33058089 -194466489 - L2 LINE L2 -40 3232 2543 * 317 129 0 16 chr3 33058180 33058242 -194466336 + (TGGA)n Simple_repeat Simple_repeat 3 63 0 352 284 173 19 chr3 33058591 33058753 -194465825 - MER5A DNA MER1_type 0 189 3 377 222 158 103 chr3 33060600 33061019 -194463559 + L1ME1 LINE L1 5507 5948 -222 638 242 13 0 chr3 33061159 33061312 -194463266 + L1ME1 LINE L1 6010 6164 -2 27 0 0 0 chr3 33061349 33061376 -194463202 + AT_rich Low_complexity Low_complexity 1 27 0 187 340 31 0 chr3 33061433 33061530 -194463048 + L2 LINE L2 2734 2833 -481 2043 179 50 64 chr3 33061862 33062360 -194462218 - MLT1D LTR MaLR -10 495 5 955 257 147 47 chr3 33062475 33062876 -194461702 - LTR16C LTR ERVL -17 474 34 631 52 10 21 chr3 33062876 33062973 -194461605 + (TAGA)n Simple_repeat Simple_repeat 2 97 0 186 103 0 0 chr3 33062980 33063009 -194461569 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr3 33063247 33063268 -194461310 + AT_rich Low_complexity Low_complexity 1 21 0 491 301 119 35 chr3 33065675 33065901 -194458677 + MIR SINE MIR 18 262 0 347 263 0 137 chr3 33066850 33066938 -194457640 + MIR SINE MIR 43 97 -165 2517 72 16 3 chr3 33066938 33067259 -194457319 - L1PA7 LINE L1 -1 6153 5829 347 263 0 137 chr3 33067259 33067345 -194457233 + MIR SINE MIR 97 193 -69 416 163 12 81 chr3 33067408 33067494 -194457084 + Tigger5 DNA MER2_type 2237 2316 -7 462 229 16 25 chr3 33067720 33067842 -194456736 - MIR SINE MIR -63 145 25 714 218 249 16 chr3 33070020 33070277 -194454301 + MER5C DNA MER1_type 2 318 -6 253 324 165 39 chr3 33070842 33071024 -194453554 - L3 LINE CR1 -222 1355 1151 285 217 0 0 chr3 33071060 33071143 -194453435 + T-rich Low_complexity Low_complexity 1 83 0 550 271 57 21 chr3 33071154 33071346 -194453232 - L3 LINE CR1 -441 1136 938 274 218 36 0 chr3 33071346 33071401 -194453177 + Tigger2 DNA MER2_type 1 57 -2661 1230 206 19 0 chr3 33071405 33071614 -194452964 - MER8 DNA MER2_type -26 213 1 1016 200 0 11 chr3 33072528 33072703 -194451875 + MER58A DNA MER1_type 1 173 -51 255 243 125 44 chr3 33072889 33073025 -194451553 + L2 LINE L2 3167 3313 0 221 294 0 0 chr3 33073505 33073556 -194451022 + polypurine Low_complexity Low_complexity 4 54 0 369 217 84 133 chr3 33073587 33073790 -194450788 + MER117 DNA MER1_type 2 194 -3 393 263 247 0 chr3 33074307 33074497 -194450081 - MIR SINE MIR -13 249 13 277 235 96 2 chr3 33074537 33074695 -194449883 + MER20 DNA MER1_type 11 205 -14 646 290 117 25 chr3 33075442 33075877 -194448701 + L1ME4a LINE L1 5631 6105 -16 1672 140 70 7 chr3 33076472 33076769 -194447809 - AluSx SINE Alu 0 314 1 742 270 120 54 chr3 33077276 33077988 -194446590 - L2 LINE L2 -2 3311 2552 22 0 0 0 chr3 33078308 33078330 -194446248 + AT_rich Low_complexity Low_complexity 1 22 0 288 232 73 12 chr3 33078382 33078464 -194446114 - L1ME4a LINE L1 -239 5882 5796 231 146 0 0 chr3 33079238 33079279 -194445299 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 180 0 0 0 chr3 33080165 33080185 -194444393 + (A)n Simple_repeat Simple_repeat 1 20 0 600 336 133 18 chr3 33080861 33081251 -194443327 + L3 LINE CR1 747 1181 -396 253 308 85 27 chr3 33081305 33081458 -194443120 - MIR SINE MIR -79 129 22 271 118 0 39 chr3 33081491 33081542 -194443036 + MIR3 SINE MIR 155 203 -5 1982 151 21 78 chr3 33081812 33082141 -194442437 - MLT1A1 LTR MaLR 0 365 60 2496 103 103 0 chr3 33082141 33082500 -194442078 - L1PA10 LINE L1 -5 6163 5768 1982 151 21 78 chr3 33082500 33082555 -194442023 - MLT1A1 LTR MaLR -305 60 3 312 309 135 35 chr3 33082916 33083198 -194441380 - L2 LINE L2 -787 2527 2218 392 266 87 17 chr3 33084265 33084438 -194440140 + L1MC5 LINE L1 7727 7911 -50 194 309 0 0 chr3 33085359 33085414 -194439164 + L2 LINE L2 2927 2981 -332 970 229 23 14 chr3 33085891 33086109 -194438469 + MER58A DNA MER1_type 5 224 0 214 268 85 12 chr3 33086111 33086193 -194438385 + L2 LINE L2 3150 3237 -35 2544 164 33 19 chr3 33086206 33086627 -194437951 - MSTC LTR MaLR -1 427 1 183 80 0 0 chr3 33086657 33086682 -194437896 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 905 274 62 15 chr3 33086726 33087066 -194437512 + L2 LINE L2 2946 3301 -12 503 271 90 32 chr3 33088083 33088271 -194436307 + MIR SINE MIR 31 229 -33 414 0 0 0 chr3 33088665 33088711 -194435867 + (CA)n Simple_repeat Simple_repeat 1 46 0 277 284 69 20 chr3 33088715 33088817 -194435761 + L2 LINE L2 3205 3311 -2 229 361 0 0 chr3 33090747 33090830 -194433748 - L2 LINE L2 -3 3310 3228 192 368 125 14 chr3 33091013 33091157 -194433421 + L2 LINE L2 3140 3299 -14 482 250 0 11 chr3 33091177 33091357 -194433221 + (TGGA)n Simple_repeat Simple_repeat 3 180 0 195 167 0 0 chr3 33091386 33091428 -194433150 + (TGGA)n Simple_repeat Simple_repeat 1 42 0 207 100 0 0 chr3 33091478 33091508 -194433070 + (TGGA)n Simple_repeat Simple_repeat 1 30 0 186 222 0 0 chr3 33092224 33092278 -194432300 + CT-rich Low_complexity Low_complexity 4 57 0 413 324 7 35 chr3 33092553 33092695 -194431883 - MIR SINE MIR -114 148 11 413 213 191 100 chr3 33092923 33093153 -194431425 - MLT1H LTR MaLR -13 536 286 190 275 134 74 chr3 33093665 33093814 -194430764 + L3b LINE CR1 1316 1473 -110 223 353 49 25 chr3 33096156 33096278 -194428300 - L2 LINE L2 -6 3266 3142 645 282 18 0 chr3 33096697 33096861 -194427717 + MIR SINE MIR 17 190 -63 308 111 0 0 chr3 33097078 33097123 -194427455 + L2 LINE L2 3269 3313 0 209 322 35 23 chr3 33097408 33097495 -194427083 - MIR SINE MIR -86 122 35 182 257 57 29 chr3 33098413 33098483 -194426095 + MIR SINE MIR 114 185 -77 2377 210 33 24 chr3 33098676 33099256 -194425322 - L1MB7 LINE L1 -20 6164 5580 397 235 78 65 chr3 33099800 33099953 -194424625 + MIR SINE MIR 72 226 -36 203 333 0 15 chr3 33100025 33100091 -194424487 + CT-rich Low_complexity Low_complexity 2 66 0 186 197 45 15 chr3 33100511 33100577 -194424001 - L2 LINE L2 -24 3248 3181 21 36 0 0 chr3 33100677 33100705 -194423873 + AT_rich Low_complexity Low_complexity 1 28 0 1733 153 10 24 chr3 33102097 33102392 -194422186 + AluJo SINE Alu 6 296 -16 255 103 0 0 chr3 33102842 33102881 -194421697 + (ATG)n Simple_repeat Simple_repeat 2 40 0 1071 254 47 0 chr3 33103180 33103393 -194421185 - MER58A DNA MER1_type -1 223 1 21 0 0 0 chr3 33103973 33103994 -194420584 + AT_rich Low_complexity Low_complexity 1 21 0 267 220 9 18 chr3 33105024 33105133 -194419445 + (TGGA)n Simple_repeat Simple_repeat 3 110 0 207 100 0 0 chr3 33105183 33105213 -194419365 + (TGGA)n Simple_repeat Simple_repeat 1 30 0 186 222 0 0 chr3 33105929 33105983 -194418595 + CT-rich Low_complexity Low_complexity 4 57 0 341 345 7 35 chr3 33106258 33106400 -194418178 - MIR SINE MIR -114 148 11 473 201 154 69 chr3 33106614 33106859 -194417719 - MLT1H LTR MaLR 0 536 286 200 269 134 74 chr3 33107371 33107520 -194417058 + L3b LINE CR1 1316 1473 -110 187 353 49 25 chr3 33109861 33109983 -194414595 - L2 LINE L2 -6 3266 3142 603 280 7 0 chr3 33110423 33110566 -194414012 + MIR SINE MIR 47 190 -72 294 111 0 0 chr3 33110783 33110828 -194413750 + L2 LINE L2 3269 3313 0 202 245 20 0 chr3 33111151 33111200 -194413378 - MIR SINE MIR -124 84 35 2448 207 33 22 chr3 33112385 33112964 -194411614 - L1MB7 LINE L1 -20 6164 5580 353 235 78 65 chr3 33113511 33113664 -194410914 + MIR SINE MIR 72 226 -36 203 333 0 15 chr3 33113736 33113802 -194410776 + CT-rich Low_complexity Low_complexity 2 66 0 21 36 0 0 chr3 33114389 33114417 -194410161 + AT_rich Low_complexity Low_complexity 1 28 0 360 0 0 0 chr3 33115224 33115264 -194409314 + (CA)n Simple_repeat Simple_repeat 2 41 0 237 288 120 8 chr3 33115400 33115525 -194409053 - L2 LINE L2 0 3313 3175 189 244 0 0 chr3 33115960 33116001 -194408577 + L2 LINE L2 3228 3268 -4 414 220 240 0 chr3 33116483 33116633 -194407945 - MER5A DNA MER1_type 0 189 4 377 284 118 6 chr3 33116890 33117059 -194407519 + MIR SINE MIR 21 208 -54 799 299 20 4 chr3 33117564 33117808 -194406770 - MIR SINE MIR -11 251 4 658 223 139 14 chr3 33118305 33118520 -194406058 + LTR16C LTR ERVL 231 472 -19 420 318 52 0 chr3 33119466 33119639 -194404939 + MIR SINE MIR 52 233 -29 284 258 54 11 chr3 33120152 33120245 -194404333 + MIR SINE MIR 34 130 -78 1617 147 130 7 chr3 33120281 33120581 -194403997 - MER1B DNA MER1_type 0 337 1 1510 178 82 79 chr3 33120629 33121095 -194403483 - MLT1C LTR MaLR 0 467 1 504 311 23 14 chr3 33122410 33122629 -194401949 + MIR SINE MIR 37 257 -5 398 240 87 59 chr3 33124192 33124446 -194400132 - L1MC5 LINE L1 -192 7769 7509 1656 229 28 16 chr3 33124454 33124877 -194399701 - L1ME1 LINE L1 -5 6161 5734 1105 230 87 38 chr3 33124874 33125300 -194399278 - L1MC5 LINE L1 -442 7519 7073 * 2246 105 0 3 chr3 33125335 33125631 -194398947 + AluSg SINE Alu 1 295 -15 283 101 14 87 chr3 33126796 33126836 -194397742 - MIR SINE MIR -115 147 112 1449 199 70 22 chr3 33126836 33127193 -194397385 + MLT1A2 LTR MaLR 1 374 0 283 101 14 87 chr3 33127193 33127221 -194397357 - MIR SINE MIR -150 112 84 310 282 80 37 chr3 33128039 33128202 -194396376 + MIR SINE MIR 84 253 -9 208 185 37 19 chr3 33129366 33129420 -194395158 + CT-rich Low_complexity Low_complexity 2 56 0 378 269 126 85 chr3 33129420 33130010 -194394568 - L2 LINE L2 -5 3308 2684 805 262 34 0 chr3 33130268 33130501 -194394077 + MIR SINE MIR 22 262 0 211 235 0 0 chr3 33130525 33130576 -194394002 - MIR SINE MIR -103 159 109 398 280 0 0 chr3 33131050 33131150 -194393428 - MIR SINE MIR -141 121 22 341 264 86 43 chr3 33131361 33131501 -194393077 + L2 LINE L2 2909 3054 -218 742 259 93 5 chr3 33132226 33132442 -194392136 + MIR SINE MIR 8 242 -20 838 211 78 16 chr3 33132533 33132789 -194391789 + MER33 DNA MER1_type 1 272 -52 436 284 30 37 chr3 33133201 33133335 -194391243 - L2 LINE L2 -1 3312 3180 1107 240 58 27 chr3 33133343 33133741 -194390837 + L1ME3 LINE L1 5738 6143 -21 2737 194 30 13 chr3 33133741 33134298 -194390280 - MLT1F1 LTR MaLR 0 567 1 1107 240 58 27 chr3 33134298 33134319 -194390259 + L1ME3 LINE L1 6143 6162 -2 427 296 155 30 chr3 33134403 33134800 -194389778 - L2 LINE L2 -276 3037 2585 1540 155 8 4 chr3 33135779 33136030 -194388548 - AluSx SINE Alu -28 284 33 283 303 129 19 chr3 33136095 33136250 -194388328 + MIR3 SINE MIR 20 191 -17 451 294 89 24 chr3 33138145 33138369 -194386209 + MIR SINE MIR 14 259 -3 381 290 19 9 chr3 33138372 33138479 -194386099 + L2 LINE L2 3153 3260 -12 730 216 122 0 chr3 33140839 33141020 -194383558 + MER3 DNA MER1_type 2 204 -5 22 0 0 0 chr3 33143153 33143175 -194381403 + AT_rich Low_complexity Low_complexity 1 22 0 278 176 99 12 chr3 33145121 33145281 -194379297 - MER5C DNA MER1_type -42 282 45 237 300 0 0 chr3 33146106 33146166 -194378412 + MIR3 SINE MIR 101 160 -48 2116 100 24 7 chr3 33146578 33146867 -194377711 + AluSq SINE Alu 1 294 -19 2144 134 0 3 chr3 33147356 33147669 -194376909 + AluSx SINE Alu 1 312 0 2080 144 0 13 chr3 33148472 33148785 -194375793 - AluSx SINE Alu -3 309 1 766 309 81 18 chr3 33148873 33149145 -194375433 - LTR16C LTR ERVL -41 450 162 21 0 0 0 chr3 33151428 33151449 -194373129 + AT_rich Low_complexity Low_complexity 1 21 0 1004 254 47 0 chr3 33152029 33152242 -194372336 + MER58A DNA MER1_type 1 223 -1 255 103 0 0 chr3 33152541 33152580 -194371998 + (CAT)n Simple_repeat Simple_repeat 2 40 0 1747 153 10 24 chr3 33153030 33153325 -194371253 - AluJo SINE Alu -16 296 6 811 107 156 0 chr3 33155320 33155442 -194369136 + AluSp/q SINE Alu 157 297 -16 253 252 36 54 chr3 33155654 33155765 -194368813 - L2 LINE L2 -218 3054 2946 395 351 153 8 chr3 33156200 33156468 -194368110 - L2 LINE L2 -856 2458 2152 180 0 0 0 chr3 33157143 33157163 -194367415 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2437 74 3 6 chr3 33157173 33157484 -194367094 - AluY SINE Alu -1 310 1 23 33 0 0 chr3 33157684 33157714 -194366864 + AT_rich Low_complexity Low_complexity 1 30 0 217 253 13 51 chr3 33158158 33158237 -194366341 + MIR3 SINE MIR 123 198 -10 181 311 100 11 chr3 33158595 33158685 -194365893 + MIR SINE MIR 1 98 -164 1968 155 17 3 chr3 33158692 33158989 -194365589 + AluJb SINE Alu 1 301 -11 186 211 0 26 chr3 33158991 33159029 -194365549 - L2 LINE L2 -14 3299 3263 226 220 0 0 chr3 33159043 33159093 -194365485 - MIR SINE MIR -115 147 98 345 323 81 19 chr3 33159109 33159270 -194365308 + MIR SINE MIR 90 260 -2 26 30 0 0 chr3 33159588 33159621 -194364957 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr3 33160000 33160022 -194364556 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 33160734 33160756 -194363822 + AT_rich Low_complexity Low_complexity 1 22 0 337 246 0 0 chr3 33163092 33163153 -194361425 + tRNA-Lys-AAA tRNA tRNA 5 65 -11 1801 154 14 3 chr3 33166608 33166901 -194357677 - AluJb SINE Alu -16 296 1 2187 126 0 0 chr3 33167065 33167374 -194357204 + AluSx SINE Alu 1 309 -3 201 324 15 0 chr3 33167514 33167582 -194356996 + L2 LINE L2 3241 3309 -4 1991 101 10 7 chr3 33167998 33168286 -194356292 - AluSq SINE Alu -11 302 14 997 113 0 0 chr3 33168303 33168436 -194356142 - AluSp SINE Alu -180 133 1 264 365 122 17 chr3 33170598 33170779 -194353799 + MIR SINE MIR 12 211 -51 969 61 88 218 chr3 33170810 33171071 -194353507 - MER30 DNA MER1_type 0 230 4 30 27 0 0 chr3 33172251 33172288 -194352290 + AT_rich Low_complexity Low_complexity 1 37 0 1254 198 69 116 chr3 33172727 33173145 -194351433 + L1MC5 LINE L1 7233 7669 -292 1598 165 62 7 chr3 33173145 33173436 -194351142 + AluSx SINE Alu 1 307 -5 1254 198 69 116 chr3 33173436 33173551 -194351027 + L1MC5 LINE L1 7669 7647 -314 1864 151 3 3 chr3 33173551 33173835 -194350743 + AluJb SINE Alu 1 284 -28 1254 198 69 116 chr3 33173835 33174021 -194350557 + L1MC5 LINE L1 7646 7839 -122 23 0 0 0 chr3 33175473 33175496 -194349082 + AT_rich Low_complexity Low_complexity 1 23 0 219 294 0 0 chr3 33175617 33175668 -194348910 + (TA)n Simple_repeat Simple_repeat 1 51 0 22 35 0 0 chr3 33175959 33175988 -194348590 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 33176576 33176598 -194347980 + AT_rich Low_complexity Low_complexity 1 22 0 189 74 0 0 chr3 33178325 33178352 -194346226 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1580 253 106 28 chr3 33178397 33178926 -194345652 - MER21B LTR ERV1 -105 758 189 22 70 0 0 chr3 33178990 33179033 -194345545 + AT_rich Low_complexity Low_complexity 1 43 0 1424 276 68 72 chr3 33179630 33181147 -194343431 + L1MCa LINE L1 46 1457 -4851 297 218 64 18 chr3 33181146 33181256 -194343322 + L1MCa LINE L1 2543 2657 -3907 * 1048 164 16 6 chr3 33181763 33181946 -194342632 - MER2 DNA MER2_type -139 206 22 26 50 0 0 chr3 33182145 33182185 -194342393 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr3 33182210 33182239 -194342339 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr3 33183044 33183068 -194341510 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 333 0 0 0 chr3 33183671 33183708 -194340870 + (A)n Simple_repeat Simple_repeat 1 37 0 342 0 0 0 chr3 33184780 33184818 -194339760 + (A)n Simple_repeat Simple_repeat 1 38 0 261 238 79 101 chr3 33185432 33185659 -194338919 + L1ME4a LINE L1 5724 5945 -176 2260 94 3 0 chr3 33185773 33186071 -194338507 - AluSg SINE Alu -11 299 1 1950 123 23 10 chr3 33187218 33187402 -194337176 - AluJb SINE Alu -7 305 114 212 0 36 0 chr3 33187402 33187430 -194337148 + (TTTG)n Simple_repeat Simple_repeat 4 32 0 1950 123 23 10 chr3 33187430 33187546 -194337032 - AluJb SINE Alu -198 114 1 534 277 137 12 chr3 33190591 33190804 -194333774 + MIR SINE MIR 4 238 -24 1876 123 11 0 chr3 33190884 33191153 -194333425 + AluSx SINE Alu 3 274 -38 2138 80 3 51 chr3 33191256 33191569 -194333009 - AluY SINE Alu -13 298 1 2104 118 0 35 chr3 33192215 33192528 -194332050 - AluSx SINE Alu -8 304 3 27 73 0 0 chr3 33193345 33193400 -194331178 + AT_rich Low_complexity Low_complexity 1 55 0 308 254 204 21 chr3 33194300 33194442 -194330136 + L1MB2 LINE L1 413 580 -5723 3092 235 26 38 chr3 33194850 33195034 -194329544 + L1MB2 LINE L1 801 986 -5317 1763 164 3 20 chr3 33195034 33195339 -194329239 + AluJb SINE Alu 1 300 -12 3092 235 26 38 chr3 33195339 33196259 -194328319 + L1MB2 LINE L1 986 1787 -4516 9008 112 9 0 chr3 33196288 33197572 -194327006 - HSMAR2 DNA Mariner 0 1302 7 11044 205 59 16 chr3 33197692 33198043 -194326535 + L1MB2 LINE L1 2030 2364 -4043 2064 125 7 3 chr3 33198043 33198339 -194326239 + AluSx SINE Alu 1 297 -15 11044 205 59 16 chr3 33198339 33199861 -194324717 + L1MB2 LINE L1 2364 3818 -2589 1455 168 3 107 chr3 33199861 33200188 -194324390 - AluJb SINE Alu -9 293 1 11044 205 59 16 chr3 33200188 33202500 -194322078 + L1MB2 LINE L1 3818 6406 -1 488 196 18 36 chr3 33202779 33202891 -194321687 + FLAM_A SINE Alu 4 113 -29 239 79 26 0 chr3 33202895 33202933 -194321645 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2146 72 3 14 chr3 33204238 33204528 -194320050 + AluYa5 SINE Alu 1 287 -24 29 0 0 0 chr3 33204528 33204557 -194320021 + AT_rich Low_complexity Low_complexity 1 29 0 21 95 0 0 chr3 33204899 33204962 -194319616 + AT_rich Low_complexity Low_complexity 1 63 0 4408 215 34 18 chr3 33205691 33206725 -194317853 - L1M2 LINE L1 -5447 1402 353 369 203 14 0 chr3 33206826 33206900 -194317678 + L1MB7 LINE L1 4052 4126 -2020 2954 226 23 22 chr3 33206937 33207672 -194316906 + L1MB7 LINE L1 5442 6177 -7 2559 127 5 24 chr3 33208181 33208600 -194315978 - L1PA15 LINE L1 -5 6160 5750 597 304 100 5 chr3 33209404 33209624 -194314954 - MIR SINE MIR -19 243 3 240 231 264 25 chr3 33209795 33209916 -194314662 + MIR SINE MIR 17 166 -96 309 343 30 42 chr3 33210428 33210594 -194313984 - L2 LINE L2 -242 3030 2867 489 215 114 55 chr3 33210814 33210951 -194313627 + L1MC5 LINE L1 7676 7834 -127 2508 57 7 0 chr3 33210951 33211250 -194313328 - AluSp SINE Alu -11 302 2 489 215 114 55 chr3 33211250 33211349 -194313229 + L1MC5 LINE L1 7834 7926 -35 21 0 0 0 chr3 33211603 33211624 -194312954 + AT_rich Low_complexity Low_complexity 1 21 0 324 276 296 10 chr3 33212063 33212266 -194312312 - MIR SINE MIR 0 262 2 21 0 0 0 chr3 33214123 33214144 -194310434 + GC_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 33214879 33214900 -194309678 + GC_rich Low_complexity Low_complexity 1 21 0 208 143 29 0 chr3 33215224 33215259 -194309319 + G-rich Low_complexity Low_complexity 4 39 0 202 229 145 36 chr3 33215834 33215917 -194308661 - L2 LINE L2 -14 3299 3208 2118 116 0 7 chr3 33216541 33216843 -194307735 - AluSx SINE Alu -12 300 1 1862 109 0 0 chr3 33217243 33217490 -194307088 + AluSx SINE Alu 54 300 -12 1779 111 33 0 chr3 33217906 33218149 -194306429 + AluSx SINE Alu 37 287 -25 270 196 0 0 chr3 33219395 33219441 -194305137 + Alu SINE Alu 1 46 -254 215 205 0 0 chr3 33219790 33219829 -194304749 + L2 LINE L2 3263 3301 -12 404 283 103 41 chr3 33220265 33220418 -194304160 - MIR SINE MIR -12 250 74 2153 126 3 3 chr3 33220418 33220719 -194303859 + AluSx SINE Alu 1 301 -11 404 283 103 41 chr3 33220719 33220797 -194303781 - MIR SINE MIR -188 74 2 2117 98 6 44 chr3 33221124 33221440 -194303138 - AluSx SINE Alu -8 304 1 281 173 0 80 chr3 33221898 33221973 -194302605 - MER103 DNA DNA -57 109 41 2105 117 0 0 chr3 33222078 33222351 -194302227 + AluSx SINE Alu 3 275 -37 219 36 0 0 chr3 33222355 33222383 -194302195 + (TAAA)n Simple_repeat Simple_repeat 1 28 0 335 247 22 11 chr3 33222423 33222512 -194302066 - L1ME4a LINE L1 -65 6056 5967 515 245 25 32 chr3 33222562 33222739 -194301839 + L1ME3A LINE L1 5412 5597 -565 333 260 0 0 chr3 33222737 33222814 -194301764 + L1ME3A LINE L1 5561 5637 -533 * 8292 173 63 43 chr3 33222818 33224494 -194300084 - MER52A LTR ERV1 0 1755 47 1191 223 157 54 chr3 33224831 33225130 -194299448 + L1ME3A LINE L1 5619 5886 -284 531 0 0 0 chr3 33225130 33225189 -194299389 + (TA)n Simple_repeat Simple_repeat 1 59 0 2116 118 3 3 chr3 33225191 33225480 -194299098 - AluSq SINE Alu -23 290 2 1191 223 157 54 chr3 33225480 33225674 -194298904 + L1ME3A LINE L1 5886 6165 -5 665 254 63 0 chr3 33225679 33225868 -194298710 + HsTC2 DNA Tc2 1524 1724 -174 249 274 49 10 chr3 33226040 33226142 -194298436 - MIR SINE MIR -10 252 147 792 192 45 98 chr3 33226517 33226741 -194297837 - MER20 DNA MER1_type -7 212 1 549 204 49 35 chr3 33226802 33226944 -194297634 - MIR SINE MIR -103 159 16 346 332 107 11 chr3 33227520 33227707 -194296871 - L2 LINE L2 -1 3312 3108 2088 116 7 3 chr3 33228031 33228325 -194296253 - AluSx SINE Alu -17 295 1 560 124 0 77 chr3 33229411 33229605 -194294973 + (AGGGGG)n Simple_repeat Simple_repeat 2 180 0 23 33 0 0 chr3 33230063 33230093 -194294485 + GC_rich Low_complexity Low_complexity 1 30 0 367 275 19 12 chr3 33230106 33230266 -194294312 + G-rich Low_complexity Low_complexity 2 162 0 245 289 23 16 chr3 33230434 33230562 -194294016 + GA-rich Low_complexity Low_complexity 2 130 0 2607 52 0 0 chr3 33231088 33231397 -194293181 - AluY SINE Alu -2 309 1 201 39 0 0 chr3 33231460 33231486 -194293092 + (CAA)n Simple_repeat Simple_repeat 3 28 0 220 122 0 24 chr3 33231890 33231931 -194292647 + (ATTTG)n Simple_repeat Simple_repeat 4 43 0 278 341 32 24 chr3 33232302 33232425 -194292153 - MIR SINE MIR -119 143 20 810 198 121 13 chr3 33232611 33232768 -194291810 - FAM SINE Alu -1 174 1 268 198 210 12 chr3 33233040 33233121 -194291457 + MER103 DNA DNA 69 165 -1 4416 187 57 11 chr3 33233245 33233599 -194290979 + L1MB8 LINE L1 4350 4686 -1492 2499 60 0 0 chr3 33233599 33233898 -194290680 + AluY SINE Alu 1 299 -12 4416 187 57 11 chr3 33233898 33235298 -194289280 + L1MB8 LINE L1 4686 6172 -6 247 158 0 0 chr3 33236606 33236644 -194287934 - L2 LINE L2 0 3272 3235 507 248 183 0 chr3 33238418 33238555 -194286023 + MER5A DNA MER1_type 27 188 -1 198 103 0 0 chr3 33238783 33238812 -194285766 + (GGGGA)n Simple_repeat Simple_repeat 5 33 0 525 282 152 19 chr3 33239160 33239536 -194285042 + L2 LINE L2 1959 2384 -930 * 880 250 108 60 chr3 33239519 33239773 -194284805 - L2 LINE L2 -5 3308 3068 1458 178 33 23 chr3 33239773 33240077 -194284501 + AluJo SINE Alu 5 311 -1 880 250 108 60 chr3 33240077 33240491 -194284087 - L2 LINE L2 -245 3068 2709 2080 115 7 0 chr3 33240763 33241041 -194283537 - AluSx SINE Alu -16 296 17 206 274 32 0 chr3 33241286 33241348 -194283230 - MIR SINE MIR -64 144 81 250 201 44 11 chr3 33242659 33242733 -194281845 + MIR SINE MIR 36 115 -93 347 24 0 0 chr3 33243349 33243391 -194281187 - L1P4 LINE L1 -643 5531 5490 6534 102 4 22 chr3 33243726 33245221 -194279357 - L1PA12 LINE L1 0 6168 4697 2195 135 0 0 chr3 33245221 33245532 -194279046 + AluY SINE Alu 1 311 0 6534 102 4 22 chr3 33245532 33245746 -194278832 - L1PA12 LINE L1 -1471 4697 4481 1759 155 0 4 chr3 33245781 33246052 -194278526 + AluJb SINE Alu 24 293 -19 192 378 37 0 chr3 33246614 33246696 -194277882 + MIR SINE MIR 54 138 -70 1830 166 7 10 chr3 33246789 33247097 -194277481 - AluJb SINE Alu -5 307 1 21 0 0 0 chr3 33247249 33247270 -194277308 + AT_rich Low_complexity Low_complexity 1 21 0 535 257 139 20 chr3 33247470 33247672 -194276906 - MIR SINE MIR -17 245 20 253 183 0 37 chr3 33247783 33247865 -194276713 + GA-rich Low_complexity Low_complexity 3 81 0 4180 44 0 0 chr3 33248903 33249381 -194275197 - L1PA3 LINE L1 -1 6154 5677 22 0 0 0 chr3 33249393 33249415 -194275163 + AT_rich Low_complexity Low_complexity 1 22 0 479 307 7 0 chr3 33249478 33249631 -194274947 - ERVL LTR ERVL -384 5380 5227 396 371 60 22 chr3 33249671 33250040 -194274538 - ERVL LTR ERVL -636 5128 4746 15839 30 0 0 chr3 33250114 33252732 -194271846 - L1HS LINE L1 0 6155 3538 2105 107 4 0 chr3 33254628 33254936 -194269642 + AluSx SINE Alu 1 309 0 375 249 183 52 chr3 33255421 33255710 -194268868 + L1ME4a LINE L1 5774 6100 -21 25 51 0 0 chr3 33255729 33255768 -194268810 + AT_rich Low_complexity Low_complexity 1 39 0 330 316 101 0 chr3 33256032 33256200 -194268378 - MIR SINE MIR 0 262 78 414 224 60 90 chr3 33256691 33256892 -194267686 + L2 LINE L2 3119 3313 0 198 337 20 20 chr3 33257806 33257904 -194266674 - L2 LINE L2 -1435 1879 1782 267 235 82 24 chr3 33258156 33258241 -194266337 + MIR3 SINE MIR 70 159 -49 247 331 55 50 chr3 33258242 33258423 -194266155 - MER5A DNA MER1_type 0 189 8 279 0 0 0 chr3 33259564 33259595 -194264983 + (T)n Simple_repeat Simple_repeat 1 31 0 774 266 121 35 chr3 33259740 33260433 -194264145 + L1MC4a LINE L1 5174 5398 -748 1731 137 108 4 chr3 33260565 33260842 -194263736 + AluJb SINE Alu 1 306 -6 2136 126 51 46 chr3 33260854 33261037 -194263541 + THE1C LTR MaLR 1 182 -193 2022 102 42 0 chr3 33261037 33261320 -194263258 - AluSx SINE Alu -17 295 1 2136 126 51 46 chr3 33261320 33261509 -194263069 + THE1C LTR MaLR 182 375 0 420 234 75 80 chr3 33262351 33262552 -194262026 - Charlie8 DNA MER1_type -2129 288 89 345 282 94 29 chr3 33262599 33262844 -194261734 + L1MC4a LINE L1 5794 6054 -1754 320 261 114 61 chr3 33263197 33263391 -194261187 + HAL1 LINE L1 851 1062 -1445 2331 52 10 42 chr3 33263391 33263699 -194260879 + AluY SINE Alu 1 298 -13 320 261 114 61 chr3 33263699 33263749 -194260829 + HAL1 LINE L1 1062 1108 -1399 322 211 110 8 chr3 33263825 33263952 -194260626 + L1P5 LINE L1 5332 5468 -686 1241 235 186 20 chr3 33263970 33264426 -194260152 - MLT1F LTR MaLR -10 532 1 369 290 158 6 chr3 33264432 33264666 -194259912 + L1ME LINE L1 5486 5772 -398 344 252 163 8 chr3 33265114 33265237 -194259341 + MIR SINE MIR 118 259 -3 392 281 32 53 chr3 33265712 33265856 -194258722 + MIR3 SINE MIR 56 197 -11 2432 71 0 0 chr3 33266350 33266668 -194257910 + AluY SINE Alu 1 318 0 4329 115 31 0 chr3 33266680 33267367 -194257211 - L1P LINE L1 -1134 5012 4305 6342 91 19 0 chr3 33267367 33268465 -194256113 + L1PA8 LINE L1 5046 6165 -7 719 206 8 0 chr3 33268942 33269073 -194255505 + FLAM_A SINE Alu 1 132 -1 295 261 87 33 chr3 33269224 33269316 -194255262 + L2 LINE L2 3168 3264 -8 23 0 0 0 chr3 33270531 33270554 -194254024 + AT_rich Low_complexity Low_complexity 1 23 0 198 343 0 43 chr3 33271552 33271622 -194252956 + L2 LINE L2 150 216 -3098 1194 181 177 0 chr3 33271761 33272004 -194252574 - AluJo SINE Alu -15 287 2 2483 72 13 0 chr3 33272129 33272436 -194252142 + AluY SINE Alu 1 311 0 2038 142 3 0 chr3 33272594 33272896 -194251682 + AluSx SINE Alu 2 304 -8 180 111 0 0 chr3 33272923 33272950 -194251628 + (TA)n Simple_repeat Simple_repeat 1 27 0 26 0 0 0 chr3 33274402 33274428 -194250150 + AT_rich Low_complexity Low_complexity 1 26 0 265 329 79 61 chr3 33275281 33275509 -194249069 + L2 LINE L2 2824 3055 -217 3318 174 92 90 chr3 33275512 33276413 -194248165 + MER21A LTR ERV1 1 903 -28 354 266 38 76 chr3 33276896 33277054 -194247524 - L2 LINE L2 -7 3306 3155 316 326 127 76 chr3 33278091 33278382 -194246196 + L2 LINE L2 2967 3272 0 203 368 23 11 chr3 33278871 33278958 -194245620 + L2 LINE L2 3210 3297 -16 499 136 11 11 chr3 33279117 33279205 -194245373 + AluSp/q SINE Alu 212 299 -14 2056 148 28 52 chr3 33279207 33279327 -194245251 + L1MA4 LINE L1 4996 5117 -1183 2086 68 79 0 chr3 33279327 33279607 -194244971 - AluY SINE Alu -9 302 1 2056 148 28 52 chr3 33279607 33279843 -194244735 + L1MA4 LINE L1 5117 5357 -943 2076 143 3 7 chr3 33279843 33280151 -194244427 + AluSx SINE Alu 1 307 -5 2056 148 28 52 chr3 33280151 33280485 -194244093 + L1MA4 LINE L1 5357 5667 -633 24 91 0 0 chr3 33280498 33280564 -194244014 + AT_rich Low_complexity Low_complexity 1 66 0 5524 159 39 49 chr3 33280566 33280923 -194243655 - L1PB1 LINE L1 0 6867 6508 2024 127 7 3 chr3 33280923 33281215 -194243363 - AluSq SINE Alu -20 293 1 5524 159 39 49 chr3 33281215 33283081 -194241497 - L1PB1 LINE L1 -359 6508 4681 18130 119 75 9 chr3 33283086 33286171 -194238407 - L1PB1 LINE L1 -3570 3292 1 2004 121 0 7 chr3 33286172 33286478 -194238100 + L1MA4 LINE L1 5662 5965 -335 29 0 0 0 chr3 33286497 33286526 -194238052 + AT_rich Low_complexity Low_complexity 1 29 0 1757 168 12 6 chr3 33286528 33286856 -194237722 + L1MA4 LINE L1 5961 6290 -10 543 208 38 0 chr3 33287053 33287159 -194237419 + MER81 DNA DNA 5 114 0 1138 288 35 19 chr3 33287345 33287717 -194236861 + L2 LINE L2 2211 2588 -726 377 207 35 69 chr3 33287708 33287824 -194236754 - L2 LINE L2 -5 3308 3197 * 360 256 91 80 chr3 33287804 33287980 -194236598 + L2 LINE L2 2569 2746 -568 * 1762 124 23 0 chr3 33287980 33288246 -194236332 + AluSp SINE Alu 1 272 -41 26 0 0 0 chr3 33289526 33289552 -194235026 + AT_rich Low_complexity Low_complexity 1 26 0 768 339 68 26 chr3 33289673 33290121 -194234457 + L2 LINE L2 2590 3063 -209 31 58 0 0 chr3 33290232 33290284 -194234294 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr3 33291167 33291188 -194233390 + AT_rich Low_complexity Low_complexity 1 21 0 2783 226 88 5 chr3 33291369 33292144 -194232434 + L1ME3A LINE L1 5328 6166 -4 23 0 0 0 chr3 33292727 33292750 -194231828 + AT_rich Low_complexity Low_complexity 1 23 0 465 19 0 0 chr3 33293540 33293594 -194230984 + (TG)n Simple_repeat Simple_repeat 2 55 0 22 70 0 0 chr3 33293788 33293831 -194230747 + AT_rich Low_complexity Low_complexity 1 43 0 2057 127 3 10 chr3 33294150 33294442 -194230136 - AluSx SINE Alu -22 290 1 2246 93 7 0 chr3 33294494 33294794 -194229784 + AluSp SINE Alu 1 302 -11 818 126 0 8 chr3 33294794 33294913 -194229665 - AluJo/FLAM SINE Alu -184 118 1 910 210 15 45 chr3 33295313 33295537 -194229041 + AluSg/x SINE Alu 90 307 0 2181 200 86 14 chr3 33295738 33296642 -194227936 + L1ME LINE L1 4850 5800 -366 422 200 55 9 chr3 33296645 33296755 -194227823 + L1MA10 LINE L1 6220 6334 0 856 216 64 8 chr3 33297658 33297894 -194226684 + L1MA4 LINE L1 6052 6300 0 267 252 154 8 chr3 33297907 33298030 -194226548 - MIR SINE MIR -10 252 112 2346 74 0 13 chr3 33298345 33298644 -194225934 - AluSc SINE Alu -14 295 1 870 94 0 55 chr3 33299426 33299554 -194225024 - AluSg/x SINE Alu -16 296 176 22 0 0 0 chr3 33299730 33299752 -194224826 + AT_rich Low_complexity Low_complexity 1 22 0 899 255 42 5 chr3 33300048 33300260 -194224318 - MER58A DNA MER1_type 0 224 5 574 248 157 66 chr3 33301475 33301645 -194222933 + L1ME LINE L1 4457 4610 -1536 2159 127 0 10 chr3 33301645 33301953 -194222625 + AluSx SINE Alu 1 305 -7 574 248 157 66 chr3 33301953 33302512 -194222066 + L1ME LINE L1 4610 5268 -878 2241 83 0 33 chr3 33302512 33302813 -194221765 + AluSq SINE Alu 4 294 -19 574 248 157 66 chr3 33302813 33302884 -194221694 + L1ME LINE L1 5268 5331 -815 471 264 177 15 chr3 33302917 33303182 -194221396 + L1ME LINE L1 5512 5819 -302 766 259 239 28 chr3 33303450 33303605 -194220973 + L2 LINE L2 2656 2777 -536 1470 209 63 73 chr3 33303605 33304113 -194220465 + MLT1D LTR MaLR 2 504 -1 766 259 239 28 chr3 33304113 33304492 -194220086 + L2 LINE L2 2777 3312 -1 831 228 162 84 chr3 33305359 33305833 -194218745 + MLT1J LTR MaLR 1 511 0 739 200 91 11 chr3 33305925 33306100 -194218478 + MER3 DNA MER1_type 4 192 -17 306 152 30 0 chr3 33307253 33307319 -194217259 + L1ME4a LINE L1 6054 6121 0 1534 98 4 27 chr3 33307630 33307855 -194216723 - AluSq SINE Alu -12 301 82 3764 219 42 32 chr3 33308428 33309343 -194215235 + L1MCb LINE L1 19 942 -5103 452 244 92 8 chr3 33309370 33309501 -194215077 - MIR SINE MIR -109 153 12 2808 167 12 14 chr3 33309721 33310237 -194214341 + L1MB3 LINE L1 5317 5831 -352 1644 155 81 20 chr3 33310755 33310793 -194213785 + L1MB3 LINE L1 5814 5848 -335 1786 142 70 25 chr3 33310793 33311152 -194213426 - THE1C LTR MaLR 0 375 1 1644 155 81 20 chr3 33311152 33311461 -194213117 + L1MB3 LINE L1 5848 6182 -1 1341 170 72 0 chr3 33311605 33311828 -194212750 + MER8 DNA MER2_type 1 239 0 23 0 0 0 chr3 33312111 33312134 -194212444 + AT_rich Low_complexity Low_complexity 1 23 0 2204 120 3 0 chr3 33313012 33313320 -194211258 - AluSg SINE Alu -1 309 1 1192 201 8 26 chr3 33313360 33313594 -194210984 + AluJo SINE Alu 34 263 -49 207 91 23 45 chr3 33313604 33313648 -194210930 + (TAAAA)n Simple_repeat Simple_repeat 2 44 0 404 296 40 33 chr3 33313730 33313882 -194210696 + HAL1 LINE L1 1169 1321 -1186 425 284 114 8 chr3 33313917 33314153 -194210425 + HAL1 LINE L1 1391 1651 -856 21 0 0 0 chr3 33314236 33314257 -194210321 + AT_rich Low_complexity Low_complexity 1 21 0 375 270 135 22 chr3 33314499 33314677 -194209901 + L1MCb LINE L1 2416 2613 -3953 266 286 104 0 chr3 33314686 33314763 -194209815 - L2 LINE L2 -11 3261 3177 190 333 159 0 chr3 33314815 33314941 -194209637 - L2 LINE L2 -3 3310 3165 420 312 176 39 chr3 33315105 33315585 -194208993 - L2 LINE L2 -263 3009 2455 180 269 183 54 chr3 33317484 33317670 -194206908 - L3 LINE CR1 -1044 533 324 414 291 99 29 chr3 33318099 33318271 -194206307 + MIR SINE MIR 37 220 -42 1068 245 133 37 chr3 33318521 33319068 -194205510 + Charlie7 DNA MER1_type 33 632 -1980 1754 172 3 10 chr3 33319098 33319394 -194205184 + AluJo SINE Alu 5 298 -14 291 217 36 58 chr3 33319441 33319579 -194204999 + Charlie7 DNA MER1_type 2477 2611 -1 193 319 64 32 chr3 33319715 33319809 -194204769 + MER5A DNA MER1_type 40 136 -53 243 0 0 0 chr3 33320718 33320745 -194203833 + (CA)n Simple_repeat Simple_repeat 2 28 0 310 217 80 40 chr3 33320905 33321080 -194203498 - L1ME4a LINE L1 -4 6117 5936 2583 64 3 0 chr3 33321379 33321691 -194202887 + AluSp SINE Alu 1 313 0 2305 200 36 0 chr3 33322323 33322844 -194201734 + L1MB7 LINE L1 5406 5945 -239 2067 131 3 7 chr3 33323518 33323823 -194200755 + AluSq SINE Alu 1 304 -9 1015 172 11 11 chr3 33323823 33323999 -194200579 + AluSc SINE Alu 131 309 0 22 0 0 0 chr3 33325163 33325185 -194199393 + AT_rich Low_complexity Low_complexity 1 22 0 2212 108 20 0 chr3 33326025 33326321 -194198257 + AluSx SINE Alu 1 302 -10 440 291 168 14 chr3 33326543 33326591 -194197987 - MIR SINE MIR -4 258 219 1554 141 27 23 chr3 33326591 33326854 -194197724 - AluJo SINE Alu -19 293 30 440 291 168 14 chr3 33326854 33326916 -194197662 - MIR SINE MIR -43 219 168 2267 107 0 3 chr3 33326916 33327214 -194197364 - AluSq SINE Alu -16 297 1 440 291 168 14 chr3 33327214 33327322 -194197256 - MIR SINE MIR -94 168 5 2358 107 0 0 chr3 33327859 33328168 -194196410 + AluSg SINE Alu 1 309 -1 248 280 43 0 chr3 33328221 33328314 -194196264 - MER20B DNA MER1_type -641 142 46 456 165 0 33 chr3 33328585 33328676 -194195902 + L1 LINE L1 4915 5002 -1144 2236 95 10 10 chr3 33328678 33328984 -194195594 + AluSx SINE Alu 1 306 -6 1412 92 0 46 chr3 33328988 33329205 -194195373 + AluSq SINE Alu 1 207 -106 709 270 140 39 chr3 33329437 33329866 -194194712 + L2 LINE L2 2736 3271 -42 2246 105 3 13 chr3 33330944 33331259 -194193319 - AluSx SINE Alu 0 312 1 319 257 0 0 chr3 33331530 33331604 -194192974 + MER117 DNA MER1_type 47 120 -77 373 239 255 23 chr3 33331900 33332159 -194192419 + MER5C DNA MER1_type 4 322 -2 242 275 143 0 chr3 33332219 33332310 -194192268 - MER20 DNA MER1_type -1 218 115 1110 156 33 19 chr3 33332643 33332854 -194191724 - AluJo SINE Alu -13 299 86 1587 158 95 7 chr3 33332997 33333270 -194191308 - AluJo SINE Alu -13 299 3 649 100 30 0 chr3 33333629 33333729 -194190849 + AluSp/q SINE Alu 192 294 -19 23 0 0 0 chr3 33334731 33334754 -194189824 + AT_rich Low_complexity Low_complexity 1 23 0 528 288 104 107 chr3 33335087 33335874 -194188704 - L1M2 LINE L1 -5626 1223 439 306 217 30 131 chr3 33336266 33336464 -194188114 - MER112 DNA MER1_type -7 253 76 227 211 0 0 chr3 33336858 33336910 -194187668 - MLT1J1 LTR MaLR -42 404 353 765 182 62 23 chr3 33336970 33337146 -194187432 - MER58A DNA MER1_type 0 224 42 216 0 0 0 chr3 33337156 33337180 -194187398 + (A)n Simple_repeat Simple_repeat 1 24 0 25 0 0 0 chr3 33337302 33337327 -194187251 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr3 33337542 33337570 -194187008 + AT_rich Low_complexity Low_complexity 1 28 0 974 113 0 0 chr3 33337572 33337705 -194186873 + FLAM_C SINE Alu 1 133 0 1128 133 0 12 chr3 33338192 33338358 -194186220 + AluSg/x SINE Alu 132 295 -15 240 226 0 0 chr3 33338919 33338972 -194185606 - L2 LINE L2 0 3313 3261 639 218 170 0 chr3 33339023 33339170 -194185408 + MER5A DNA MER1_type 17 188 -1 234 386 0 26 chr3 33339400 33339553 -194185025 + L2 LINE L2 2626 2774 -540 270 347 94 50 chr3 33339749 33340157 -194184421 + L2 LINE L2 2772 3186 -86 404 91 15 0 chr3 33341319 33341385 -194183193 - MER41A LTR ERV1 -88 466 400 266 287 56 28 chr3 33341584 33341727 -194182851 - L1ME LINE L1 -272 5849 5703 253 320 0 0 chr3 33342043 33342121 -194182457 + (CG)n Simple_repeat Simple_repeat 1 78 0 230 308 13 58 chr3 33342384 33342540 -194182038 - MIR3 SINE MIR -37 171 23 209 154 0 0 chr3 33344473 33344512 -194180066 - MER5A DNA MER1_type -83 106 68 964 171 73 24 chr3 33344512 33344717 -194179861 - AluJo SINE Alu -12 300 86 266 196 143 0 chr3 33344718 33344774 -194179804 - MER5A DNA MER1_type -113 76 13 972 176 83 10 chr3 33344908 33345113 -194179465 - MER58A DNA MER1_type -3 221 2 842 107 0 57 chr3 33345129 33345314 -194179264 - FLAM_C SINE Alu 0 177 1 220 205 0 0 chr3 33345449 33345488 -194179090 + (CATA)n Simple_repeat Simple_repeat 2 40 0 945 201 15 25 chr3 33346607 33346811 -194177767 - MER20 DNA MER1_type -1 218 17 213 333 251 14 chr3 33347007 33347214 -194177364 - L3 LINE CR1 -1012 565 310 502 277 158 47 chr3 33347354 33347715 -194176863 + LTR16C LTR ERVL 89 489 -2 196 362 43 0 chr3 33347940 33348034 -194176544 - L2 LINE L2 0 3313 3216 * 331 267 99 61 chr3 33348019 33348150 -194176428 - L2 LINE L2 -218 3054 2919 1574 185 83 43 chr3 33348292 33348885 -194175693 + MLT2F LTR ERVL 1 663 0 389 306 56 12 chr3 33348894 33349054 -194175524 - L2 LINE L2 -569 2745 2579 1121 204 84 35 chr3 33349115 33349459 -194175119 - L1ME1 LINE L1 -5 6161 5801 2286 99 3 0 chr3 33349474 33349768 -194174810 - AluSq SINE Alu -18 295 1 915 261 100 16 chr3 33350196 33350506 -194174072 - LTR16B LTR ERVL 0 464 129 489 317 39 32 chr3 33350563 33351128 -194173450 - HERV16 LTR ERVL -5 5320 4756 815 341 48 26 chr3 33351244 33352266 -194172312 - HERV16 LTR ERVL -828 4826 3722 202 214 0 0 chr3 33352283 33352325 -194172253 - L2 LINE L2 -775 2539 2498 450 261 29 36 chr3 33352368 33352506 -194172072 + L2 LINE L2 3177 3313 0 1009 321 134 29 chr3 33352508 33353138 -194171440 + L2 LINE L2 2403 3104 -209 203 275 8 150 chr3 33353418 33353538 -194171040 + L2 LINE L2 3175 3277 -36 211 225 0 0 chr3 33353539 33353579 -194170999 + (CATATA)n Simple_repeat Simple_repeat 4 43 0 733 157 0 30 chr3 33353940 33354074 -194170504 - MER58B DNA MER1_type -15 326 197 717 319 19 5 chr3 33354297 33354510 -194170068 - MIR SINE MIR -30 232 17 28 0 0 0 chr3 33354803 33354831 -194169747 + AT_rich Low_complexity Low_complexity 1 28 0 204 125 0 0 chr3 33355554 33355586 -194168992 + (TTA)n Simple_repeat Simple_repeat 2 33 0 2177 123 0 0 chr3 33355605 33355889 -194168689 - AluSg SINE Alu -15 295 12 281 309 166 22 chr3 33355962 33356143 -194168435 + L3b LINE CR1 1374 1580 -3 703 227 13 7 chr3 33356617 33356767 -194167811 + MIR SINE MIR 9 159 -103 2897 60 4 114 chr3 33356768 33357250 -194167328 - MLT2A1 LTR ERVL -2 442 14 471 198 30 0 chr3 33357256 33357357 -194167221 + MIR SINE MIR 154 257 -5 426 212 76 0 chr3 33357501 33357619 -194166959 - L1MC5 LINE L1 -124 7837 7711 261 242 147 26 chr3 33357926 33358116 -194166462 + LTR48 LTR ERV1 524 736 -51 686 219 7 0 chr3 33358172 33358309 -194166269 + MER58B DNA MER1_type 194 331 -10 391 243 106 97 chr3 33358410 33358547 -194166031 - L1MC5 LINE L1 -266 7695 7561 1539 195 26 19 chr3 33358547 33358855 -194165723 + AluJo SINE Alu 1 310 -2 391 243 106 97 chr3 33358855 33358983 -194165595 - L1MC5 LINE L1 -400 7561 7436 2333 85 0 7 chr3 33358983 33359288 -194165290 + AluY SINE Alu 1 303 -8 391 243 106 97 chr3 33359288 33359494 -194165084 - L1MC5 LINE L1 -525 7436 7219 1076 268 73 77 chr3 33359686 33359705 -194164873 + L2 LINE L2 2524 2542 -771 2135 103 4 0 chr3 33359705 33360027 -194164551 + AluSg SINE Alu 1 323 0 1076 268 73 77 chr3 33360027 33360213 -194164365 + L2 LINE L2 2542 2727 -586 2022 93 7 21 chr3 33360213 33360519 -194164059 + AluSg1 SINE Alu 5 306 0 1076 268 73 77 chr3 33360519 33360820 -194163758 + L2 LINE L2 2727 3025 -288 2134 120 3 3 chr3 33360820 33361129 -194163449 + AluSx SINE Alu 1 309 -3 1076 268 73 77 chr3 33361129 33361415 -194163163 + L2 LINE L2 3025 3311 -2 675 288 28 19 chr3 33361532 33361747 -194162831 - MIR SINE MIR -32 230 14 348 269 144 0 chr3 33361810 33361914 -194162664 - L2 LINE L2 0 3313 3195 323 244 181 55 chr3 33362138 33362265 -194162313 - MIR SINE MIR -113 149 7 210 300 180 35 chr3 33362776 33362917 -194161661 + MIR SINE MIR 14 170 -57 210 254 15 60 chr3 33362922 33362989 -194161589 - L2 LINE L2 0 3313 3250 193 188 47 62 chr3 33363585 33363649 -194160929 - MIR SINE MIR -84 178 116 387 0 0 0 chr3 33363760 33363803 -194160775 + (CA)n Simple_repeat Simple_repeat 2 44 0 234 233 89 33 chr3 33364015 33364105 -194160473 - MLT1I LTR MaLR -39 370 276 1002 254 35 16 chr3 33364564 33364820 -194159758 + MLT1H LTR MaLR 62 322 -227 3198 118 7 61 chr3 33364991 33365060 -194159518 - L1PA16 LINE L1 0 6166 6095 2295 56 32 0 chr3 33365060 33365345 -194159233 - AluY SINE Alu -17 294 1 3198 118 7 61 chr3 33365345 33365779 -194158799 - L1PA16 LINE L1 -71 6095 5695 1753 126 58 51 chr3 33365779 33365933 -194158645 - AluSx SINE Alu -16 296 138 2205 125 3 6 chr3 33365933 33366244 -194158334 - AluSx SINE Alu -2 310 1 1753 126 58 51 chr3 33366244 33366383 -194158195 - AluSx SINE Alu -174 138 1 3198 118 7 61 chr3 33366383 33366453 -194158125 - L1PA16 LINE L1 -471 5695 5623 3833 153 20 4 chr3 33366453 33367464 -194157114 + L1P4 LINE L1 4556 5577 -589 787 215 6 25 chr3 33367465 33367628 -194156950 - FRAM SINE Alu -16 160 1 4725 150 40 6 chr3 33367686 33368485 -194156093 + LTR1B LTR ERV1 1 826 0 482 243 0 19 chr3 33369937 33370044 -194154534 + L2 LINE L2 3208 3312 -1 592 234 45 45 chr3 33370402 33370603 -194153975 - L2 LINE L2 -965 2349 2149 464 281 144 19 chr3 33370614 33370774 -194153804 - MER5A DNA MER1_type -6 183 4 292 347 216 22 chr3 33370774 33371620 -194152958 - L2 LINE L2 -1161 2153 1142 1114 161 22 65 chr3 33371891 33372214 -194152364 + MER33 DNA MER1_type 6 314 -10 707 151 50 0 chr3 33423282 33423401 -194101177 - FLAM_C SINE Alu -7 136 12 1771 201 11 72 chr3 33425006 33425397 -194099181 - L1MB1 LINE L1 -15 6174 5760 243 0 0 0 chr3 33425397 33425424 -194099154 + (TG)n Simple_repeat Simple_repeat 2 28 0 191 61 30 0 chr3 33425434 33425467 -194099111 + (TA)n Simple_repeat Simple_repeat 1 34 0 1771 201 11 72 chr3 33425467 33426006 -194098572 - L1MB1 LINE L1 -438 5751 5298 307 264 11 0 chr3 33427623 33427710 -194096868 + LTR16C LTR ERVL 404 491 0 616 183 32 97 chr3 33428764 33428950 -194095628 + MER5B DNA MER1_type 2 175 -3 658 270 36 24 chr3 33429249 33429648 -194094930 - MLT1G1 LTR MaLR 0 595 100 298 185 0 0 chr3 33429946 33430000 -194094578 + Charlie8 DNA MER1_type 127 180 -2237 618 208 125 36 chr3 33430014 33430206 -194094372 - MER3 DNA MER1_type 0 209 1 2353 164 51 26 chr3 33430461 33430954 -194093624 - MLT1D LTR MaLR 0 505 1 2223 96 0 7 chr3 33431428 33431721 -194092857 - AluSx SINE Alu -11 301 11 1834 150 55 65 chr3 33432191 33432590 -194091988 + MLT2C1 LTR ERVL 3 397 0 401 242 150 33 chr3 33433669 33433822 -194090756 + MLT1J2 LTR MaLR 189 359 -91 1625 201 3 3 chr3 33434212 33434500 -194090078 + AluJo SINE Alu 5 292 -20 235 261 22 120 chr3 33434817 33434909 -194089669 + L2 LINE L2 3182 3264 -8 289 388 0 0 chr3 33435016 33435145 -194089433 + L2 LINE L2 2224 2352 -962 941 217 38 5 chr3 33435961 33436173 -194088405 + MER58A DNA MER1_type 2 220 -4 250 372 122 6 chr3 33436690 33436854 -194087724 - MIR SINE MIR -62 200 18 702 187 73 0 chr3 33437010 33437160 -194087418 + Charlie1 DNA MER1_type 66 226 -2535 1494 188 4 0 chr3 33437260 33437526 -194087052 - THE1B LTR MaLR -97 267 1 1024 225 31 56 chr3 33437526 33437847 -194086731 + MER110A LTR ERV1 156 468 0 21 0 0 0 chr3 33438309 33438330 -194086248 + AT_rich Low_complexity Low_complexity 1 21 0 384 22 0 0 chr3 33438923 33438968 -194085610 + (CA)n Simple_repeat Simple_repeat 1 45 0 908 165 163 60 chr3 33439431 33439496 -194085082 - LTR37A LTR ERV1 -1 425 368 2301 80 10 3 chr3 33439496 33439798 -194084780 + AluY SINE Alu 1 304 -7 908 165 163 60 chr3 33439798 33440113 -194084465 - LTR37A LTR ERV1 -58 368 6 924 268 138 10 chr3 33440231 33440631 -194083947 + LTR33 LTR ERVL 4 454 -67 1896 145 142 36 chr3 33440808 33441195 -194083383 - MSTA LTR MaLR 0 428 1 366 165 44 22 chr3 33441824 33441915 -194082663 - MLT1I LTR MaLR -8 401 309 279 260 14 0 chr3 33442060 33442133 -194082445 - MLT1I LTR MaLR -335 74 1 318 184 0 0 chr3 33442580 33442656 -194081922 + CT-rich Low_complexity Low_complexity 3 78 0 379 169 0 12 chr3 33443992 33444075 -194080503 - L1MA5A LINE L1 0 6297 6216 1246 100 0 0 chr3 33444075 33444235 -194080343 - AluSq SINE Alu -153 160 1 22 0 0 0 chr3 33444476 33444498 -194080080 + AT_rich Low_complexity Low_complexity 1 22 0 311 333 100 8 chr3 33444674 33444794 -194079784 + MER5A DNA MER1_type 55 185 -4 22 56 0 0 chr3 33445132 33445168 -194079410 + AT_rich Low_complexity Low_complexity 1 36 0 2093 125 3 0 chr3 33445811 33446098 -194078480 + AluSg SINE Alu 1 288 -22 938 285 231 19 chr3 33446377 33446861 -194077717 + L2 LINE L2 738 1324 -1990 812 234 51 81 chr3 33446958 33447352 -194077226 - MLT1J LTR MaLR -129 382 1 474 256 53 0 chr3 33447354 33447487 -194077091 + L2 LINE L2 1324 1463 -1851 2155 300 173 18 chr3 33447490 33448772 -194075806 + L2 LINE L2 1711 2792 -521 2219 97 3 3 chr3 33448772 33449072 -194075506 - AluY SINE Alu -10 301 2 2186 125 3 0 chr3 33449074 33449369 -194075209 - AluSp SINE Alu -17 296 1 2155 300 173 18 chr3 33449369 33449464 -194075114 + L2 LINE L2 2792 3304 -9 1770 175 80 13 chr3 33450464 33450816 -194073762 + MLT2D LTR ERVL 1 383 -31 414 0 0 0 chr3 33450816 33450862 -194073716 + (CA)n Simple_repeat Simple_repeat 2 47 0 1770 175 80 13 chr3 33450862 33450897 -194073681 + MLT2D LTR ERVL 383 414 0 29386 114 18 69 chr3 33451047 33456732 -194067846 - L1P LINE L1 -743 5403 13 21 36 0 0 chr3 33457722 33457750 -194066828 + AT_rich Low_complexity Low_complexity 1 28 0 343 336 20 27 chr3 33458869 33459018 -194065560 + MIR3 SINE MIR 38 185 -23 324 215 91 25 chr3 33459128 33459249 -194065329 - L1ME4a LINE L1 -38 6083 5955 1835 188 30 25 chr3 33459543 33459937 -194064641 + Tigger1 DNA MER2_type 2 397 -2021 242 188 0 0 chr3 33459943 33459991 -194064587 + Tigger1 DNA MER2_type 1161 1208 -1210 1466 248 41 13 chr3 33460092 33460552 -194064026 - LTR33 LTR ERVL -48 473 1 2575 299 103 14 chr3 33460555 33461581 -194062997 - L2 LINE L2 -1864 1450 333 734 288 38 29 chr3 33461596 33461836 -194062742 - MIR SINE MIR -16 246 5 413 280 185 12 chr3 33461854 33462097 -194062481 - L2 LINE L2 -2998 316 32 207 0 0 0 chr3 33462224 33462247 -194062331 + (T)n Simple_repeat Simple_repeat 1 23 0 33 43 0 0 chr3 33462273 33462320 -194062258 + AT_rich Low_complexity Low_complexity 1 47 0 385 329 64 21 chr3 33463670 33463810 -194060768 + L2 LINE L2 3168 3313 0 632 258 102 48 chr3 33464657 33465055 -194059523 - MLT1G LTR MaLR -107 460 22 1617 167 69 28 chr3 33465088 33465448 -194059130 + THE1C LTR MaLR 1 375 0 2072 128 3 10 chr3 33466158 33466464 -194058114 - AluSx SINE Alu -8 304 1 693 300 4 11 chr3 33466479 33466739 -194057839 - MIR SINE MIR -1 261 4 604 197 45 15 chr3 33467061 33467193 -194057385 - L2 LINE L2 -1272 2042 1907 832 238 71 10 chr3 33467348 33467594 -194056984 + MIR SINE MIR 10 262 0 425 78 0 0 chr3 33468132 33468196 -194056382 - L1P LINE L1 -780 5392 5329 856 284 65 57 chr3 33468979 33469489 -194055089 + MLT2B3 LTR ERVL 1 514 -40 211 277 0 0 chr3 33469775 33469822 -194054756 + CT-rich Low_complexity Low_complexity 2 48 0 618 175 51 120 chr3 33469823 33470010 -194054568 + MLT1A2 LTR MaLR 173 345 -29 459 0 0 0 chr3 33470010 33470061 -194054517 + (TG)n Simple_repeat Simple_repeat 2 52 0 618 175 51 120 chr3 33470061 33470090 -194054488 + MLT1A2 LTR MaLR 345 374 0 884 280 65 38 chr3 33470769 33471140 -194053438 + LTR16C LTR ERVL 81 461 -30 2164 178 78 59 chr3 33471320 33471859 -194052719 + MER44D DNA MER2_type 2 605 0 797 229 116 51 chr3 33472526 33472818 -194051760 - LTR16C LTR ERVL 0 491 181 1316 284 57 5 chr3 33472821 33473244 -194051334 + LTR16A LTR ERVL 1 445 -5 344 377 106 33 chr3 33473678 33474129 -194050449 + L2 LINE L2 2474 2957 -357 363 381 45 6 chr3 33474214 33474390 -194050188 - MIR3 SINE MIR -9 199 17 523 235 41 18 chr3 33474650 33474820 -194049758 - MER104 DNA MER2_type -3 177 4 247 294 174 0 chr3 33474969 33475061 -194049517 - L2 LINE L2 -1 3271 3164 981 287 13 4 chr3 33475358 33475595 -194048983 + MIR SINE MIR 3 241 -21 339 345 111 13 chr3 33475674 33475900 -194048678 + MIR SINE MIR 15 262 0 1119 269 18 26 chr3 33477233 33477575 -194047003 + MLT1H LTR MaLR 6 344 -205 243 227 15 15 chr3 33477849 33477915 -194046663 + MLT1J2 LTR MaLR 77 142 -308 1870 218 92 28 chr3 33477973 33478814 -194045764 + L1MB8 LINE L1 5122 6011 -167 323 172 111 40 chr3 33478827 33478926 -194045652 + THE1C LTR MaLR 19 124 -251 432 310 6 19 chr3 33481558 33481716 -194042862 - MLT1H LTR MaLR -339 210 55 1055 225 121 114 chr3 33481860 33482447 -194042131 - MLT1E LTR MaLR -2 591 1 299 353 8 16 chr3 33483100 33483222 -194041356 + L2 LINE L2 2939 3059 -213 435 210 81 16 chr3 33484026 33484150 -194040428 - LTR67 LTR ERVL -4 553 422 569 312 93 29 chr3 33484201 33484480 -194040098 - ERVL LTR ERVL -1338 4426 4130 320 259 65 29 chr3 33484878 33485017 -194039561 + MLT1I LTR MaLR 232 375 -34 348 324 11 27 chr3 33485165 33485350 -194039228 - ERVL LTR ERVL -1995 3659 3478 290 162 14 0 chr3 33485350 33485424 -194039154 + CT-rich Low_complexity Low_complexity 2 76 0 293 299 0 0 chr3 33485731 33485818 -194038760 - ERVL LTR ERVL -2444 3210 3124 344 362 51 6 chr3 33485893 33486070 -194038508 - ERVL LTR ERVL -1967 3029 2845 400 331 18 18 chr3 33487927 33488093 -194036485 + HAL1 LINE L1 2237 2402 -105 30 59 0 0 chr3 33488133 33488184 -194036394 + AT_rich Low_complexity Low_complexity 1 51 0 4427 219 25 52 chr3 33488501 33489782 -194034796 + L1M4 LINE L1 22 1268 -5274 413 192 10 10 chr3 33489882 33489986 -194034592 + LTR43 LTR ERV1 499 602 0 1642 245 72 11 chr3 33490000 33490526 -194034052 + L1M4 LINE L1 1601 2158 -4488 29739 73 10 5 chr3 33490540 33494294 -194030284 - L1PA6 LINE L1 -13 6141 2354 2347 92 0 0 chr3 33494294 33494587 -194029991 - AluY SINE Alu -18 293 1 29739 73 10 5 chr3 33494587 33495907 -194028671 - L1PA6 LINE L1 -3800 2354 1043 5722 70 30 4 chr3 33496007 33496784 -194027794 + L1PA7 LINE L1 5356 6152 -2 763 117 37 6 chr3 33496938 33497101 -194027477 - L1MA7 LINE L1 0 6291 6124 636 244 19 73 chr3 33498498 33498703 -194025875 - MER20 DNA MER1_type 0 219 26 1096 315 46 13 chr3 33499248 33499638 -194024940 + LTR16A LTR ERVL 16 418 -32 861 319 69 7 chr3 33499932 33500367 -194024211 + MLT1J LTR MaLR 17 478 -33 199 239 25 25 chr3 33500960 33501047 -194023531 + CT-rich Low_complexity Low_complexity 5 94 -69 751 156 0 57 chr3 33501047 33501188 -194023390 - FLAM_A SINE Alu 0 133 1 199 239 25 25 chr3 33501188 33501259 -194023319 + CT-rich Low_complexity Low_complexity 93 163 0 1731 243 32 41 chr3 33501554 33502213 -194022365 - L1ME3A LINE L1 -196 5974 5322 22 35 0 0 chr3 33502229 33502258 -194022320 + AT_rich Low_complexity Low_complexity 1 29 0 327 289 149 0 chr3 33502489 33502610 -194021968 - MIR SINE MIR -74 188 50 1265 220 23 16 chr3 33502667 33502971 -194021607 - AluJo SINE Alu -6 306 1 256 325 73 8 chr3 33502974 33503097 -194021481 - MIR SINE MIR -98 164 34 2917 138 15 81 chr3 33503108 33503201 -194021377 - LTR9 LTR ERV1 -38 574 476 2505 62 0 31 chr3 33503201 33503522 -194021056 + AluY SINE Alu 1 311 0 2917 138 15 81 chr3 33503522 33504043 -194020535 - LTR9 LTR ERV1 -136 476 1 843 64 0 0 chr3 33504543 33504653 -194019925 + (TTCC)n Simple_repeat Simple_repeat 2 111 0 925 287 81 50 chr3 33504776 33505271 -194019307 - LTR33 LTR ERVL -7 514 5 573 344 16 8 chr3 33505470 33505839 -194018739 - ERVL LTR ERVL -398 5366 4995 315 256 23 12 chr3 33507660 33507746 -194016832 + MIR SINE MIR 5 91 -171 1235 145 98 0 chr3 33507954 33508168 -194016410 - MER2 DNA MER2_type -110 235 1 913 314 48 10 chr3 33508666 33508978 -194015600 + LTR33 LTR ERVL 1 324 -197 395 269 0 0 chr3 33509013 33509106 -194015472 + MER69 DNA AcHobo 11 103 -1123 24 0 0 0 chr3 33509677 33509701 -194014877 + AT_rich Low_complexity Low_complexity 1 24 0 365 222 69 105 chr3 33509701 33509847 -194014731 - HAL1 LINE L1 -3 2504 2354 1602 186 61 0 chr3 33509847 33510174 -194014404 - MER7A DNA MER2_type -1 345 1 365 222 69 105 chr3 33510174 33510193 -194014385 - HAL1 LINE L1 -153 2354 2336 405 0 0 0 chr3 33510193 33510238 -194014340 + (TG)n Simple_repeat Simple_repeat 1 45 0 234 0 0 0 chr3 33510237 33510263 -194014315 + (GA)n Simple_repeat Simple_repeat 1 26 0 * 365 222 69 105 chr3 33510238 33510402 -194014176 - HAL1 LINE L1 -171 2336 2210 201 263 0 0 chr3 33510684 33510722 -194013856 - L2 LINE L2 -18 3295 3258 312 343 77 34 chr3 33510761 33511114 -194013464 - MLT1K LTR MaLR -10 578 211 945 264 91 14 chr3 33511733 33512029 -194012549 + LTR16C LTR ERVL 159 477 -14 561 287 124 0 chr3 33512241 33512450 -194012128 + MIR SINE MIR 23 257 -5 22 0 0 0 chr3 33512534 33512556 -194012022 + AT_rich Low_complexity Low_complexity 1 22 0 183 283 38 19 chr3 33513157 33513210 -194011368 + MER5A DNA MER1_type 1 54 -135 293 323 99 35 chr3 33513601 33513802 -194010776 + L2 LINE L2 3096 3309 -4 623 233 135 10 chr3 33514214 33514407 -194010171 - L2 LINE L2 -3 3310 3094 2473 238 153 12 chr3 33514451 33515283 -194009295 - L2 LINE L2 -669 2645 1697 2197 71 48 0 chr3 33515739 33516034 -194008544 - AluY SINE Alu -2 309 1 182 256 26 0 chr3 33516649 33516688 -194007890 + L2 LINE L2 2586 2625 -689 734 281 108 61 chr3 33516759 33517183 -194007395 + LTR16A LTR ERVL 4 447 -3 258 176 39 0 chr3 33517252 33517303 -194007275 + L2 LINE L2 3209 3261 -11 861 318 65 22 chr3 33517836 33518160 -194006418 + MLT1K LTR MaLR 85 422 -166 355 316 58 73 chr3 33518273 33518615 -194005963 + L2 LINE L2 2935 3271 -1 281 270 9 61 chr3 33520485 33520600 -194003978 + MIR SINE MIR 104 212 -50 667 325 74 28 chr3 33520787 33521150 -194003428 + LTR16C LTR ERVL 96 475 -16 269 214 126 39 chr3 33521636 33521739 -194002839 + L2 LINE L2 3161 3272 0 282 311 87 16 chr3 33521939 33522122 -194002456 + MIR SINE MIR 17 212 -50 1294 259 23 41 chr3 33523003 33523482 -194001096 + MLT1H LTR MaLR 13 545 -4 281 178 0 0 chr3 33525871 33525916 -193998662 - MLT1L LTR MaLR -223 392 348 348 322 34 11 chr3 33526227 33526404 -193998174 + Charlie8 DNA MER1_type 83 263 -2154 215 348 89 71 chr3 33527809 33528033 -193996545 + L2 LINE L2 3045 3272 0 5249 160 53 8 chr3 33528197 33529122 -193995456 - L1P LINE L1 -5169 977 11 8137 135 14 4 chr3 33529156 33531306 -193993272 - L1PA10 LINE L1 -4 6164 4000 933 245 73 0 chr3 33531415 33531758 -193992820 + L1MC2 LINE L1 2125 2492 -3892 929 190 101 53 chr3 33531754 33531935 -193992643 + L1MC2 LINE L1 3733 3931 -2451 * 2168 128 3 0 chr3 33531935 33532232 -193992346 + AluSp SINE Alu 1 298 -15 929 190 101 53 chr3 33532232 33532297 -193992281 + L1MC2 LINE L1 3931 3991 -2391 2109 169 8 6 chr3 33532345 33532700 -193991878 - MLT1A1 LTR MaLR 0 365 10 1022 199 46 10 chr3 33532711 33533061 -193991517 + L1MC2 LINE L1 5390 5748 -672 235 208 38 9 chr3 33536109 33536215 -193988363 + (TA)n Simple_repeat Simple_repeat 1 109 0 249 33 0 0 chr3 33536235 33536265 -193988313 + (TG)n Simple_repeat Simple_repeat 2 31 0 582 144 18 45 chr3 33536669 33536780 -193987798 + L1MC2 LINE L1 6062 6169 -411 * 1331 174 15 14 chr3 33536777 33537046 -193987532 - L1MC/D LINE L1 -515 5657 5399 320 318 0 35 chr3 33537048 33537167 -193987411 - MIR SINE MIR -67 141 42 267 309 24 55 chr3 33537612 33537777 -193986801 + MLT1K LTR MaLR 407 566 -22 184 335 168 7 chr3 33538015 33538170 -193986408 + L2 LINE L2 2228 2407 -907 2319 226 64 72 chr3 33538221 33538284 -193986294 - L1ME2 LINE L1 -301 5863 5801 2181 65 62 0 chr3 33538284 33538560 -193986018 + AluY SINE Alu 1 293 -18 2319 226 64 72 chr3 33538560 33539898 -193984680 - L1ME2 LINE L1 -363 5801 4470 283 128 0 21 chr3 33539898 33539945 -193984633 + THE1C LTR MaLR 1 46 -318 834 184 0 0 chr3 33539956 33540092 -193984486 - AluJo SINE Alu -176 136 1 1860 169 23 20 chr3 33540092 33540435 -193984143 + THE1C LTR MaLR 32 375 0 808 201 144 17 chr3 33540436 33540735 -193983843 - L1ME2 LINE L1 -1673 4473 4137 435 335 109 14 chr3 33541566 33541859 -193982719 + L2 LINE L2 2429 2749 -565 610 243 102 44 chr3 33542510 33542736 -193981842 - MIR SINE MIR -16 246 8 511 279 51 17 chr3 33543141 33543322 -193981256 + MIR SINE MIR 34 219 -43 439 281 36 14 chr3 33543727 33543866 -193980712 + MLT2E LTR ERVL 34 175 -453 365 379 36 12 chr3 33543874 33544127 -193980451 + MLT2E LTR ERVL 356 614 -14 1284 191 88 28 chr3 33544187 33544507 -193980071 - MER58B DNA MER1_type -1 340 2 323 283 85 80 chr3 33544512 33544724 -193979854 + MIR SINE MIR 21 233 -29 21 0 0 0 chr3 33545225 33545246 -193979332 + AT_rich Low_complexity Low_complexity 1 21 0 2141 117 10 3 chr3 33545959 33546267 -193978311 - AluSx SINE Alu -2 310 1 307 283 83 56 chr3 33547062 33547242 -193977336 + MIR SINE MIR 49 233 -29 612 283 31 26 chr3 33548235 33548461 -193976117 + L2 LINE L2 3005 3231 -82 5536 48 0 0 chr3 33549841 33550514 -193974064 - L1PA5 LINE L1 0 6154 5482 2375 108 164 0 chr3 33550679 33551104 -193973474 - L1MA9 LINE L1 -3 6309 5817 928 180 6 6 chr3 33551124 33551285 -193973293 - MER2 DNA MER2_type -184 161 1 659 175 33 38 chr3 33551287 33551470 -193973108 - L1M1 LINE L1 -3927 2805 2624 11674 181 17 8 chr3 33551475 33554893 -193969685 - L1PB1 LINE L1 -1 6866 3416 2177 141 8 32 chr3 33554890 33555267 -193969311 - L1PB1 LINE L1 -5860 1003 636 * 1078 138 53 0 chr3 33555269 33555457 -193969121 - L1PB1 LINE L1 -6663 200 3 6866 260 42 22 chr3 33555460 33556140 -193968438 - L1M1 LINE L1 -4089 2643 1978 399 21 0 0 chr3 33556140 33556188 -193968390 + (TG)n Simple_repeat Simple_repeat 2 49 0 6866 260 42 22 chr3 33556188 33558045 -193966533 - L1M1 LINE L1 -4754 1978 391 1229 308 22 21 chr3 33558051 33558661 -193965917 - L1M3de LINE L1 -5593 1060 2 25 0 0 0 chr3 33558669 33558694 -193965884 + AT_rich Low_complexity Low_complexity 1 25 0 343 281 40 49 chr3 33559704 33560041 -193964537 + L1MEd LINE L1 1004 1226 -4893 329 352 50 5 chr3 33560046 33560245 -193964333 + HAL1 LINE L1 1458 1665 -842 535 273 109 36 chr3 33560781 33561357 -193963221 + L1MC5 LINE L1 7311 7928 -33 239 210 145 0 chr3 33561500 33561562 -193963016 + Charlie1 DNA MER1_type 157 227 -2534 * 352 235 43 9 chr3 33561560 33561675 -193962903 + Charlie1 DNA MER1_type 2631 2749 -12 292 319 80 65 chr3 33561725 33561863 -193962715 + MIR SINE MIR 37 176 -86 1773 239 81 64 chr3 33562131 33562912 -193961666 - L1ME3A LINE L1 -121 6049 5256 327 191 0 16 chr3 33563529 33563592 -193960986 - MER5B DNA MER1_type -3 175 114 6505 189 41 21 chr3 33563613 33566082 -193958496 - L1PA16 LINE L1 -3 6163 3650 6169 252 20 15 chr3 33566078 33568000 -193956578 + L1PA16 LINE L1 1719 3647 -2499 * 311 132 19 0 chr3 33568001 33568054 -193956524 + MER5B DNA MER1_type 125 178 0 217 225 14 56 chr3 33568292 33568363 -193956215 + CT-rich Low_complexity Low_complexity 5 72 0 1520 189 7 39 chr3 33568365 33568671 -193955907 - AluJo SINE Alu -4 308 13 264 300 42 42 chr3 33569231 33569421 -193955157 + L1ME LINE L1 5643 5832 -289 393 209 395 0 chr3 33569696 33569830 -193954748 + MER5A DNA MER1_type 3 189 0 189 0 0 0 chr3 33570069 33570090 -193954488 + (TC)n Simple_repeat Simple_repeat 2 22 0 2183 108 3 0 chr3 33570090 33570378 -193954200 - AluSg SINE Alu -17 293 5 1378 197 123 55 chr3 33571453 33571716 -193952862 - MSTD LTR MaLR -6 390 94 1965 135 24 0 chr3 33571716 33572012 -193952566 - AluSg SINE Alu -6 304 2 1378 197 123 55 chr3 33572012 33572113 -193952465 - MSTD LTR MaLR -302 94 1 28 29 0 0 chr3 33572135 33572170 -193952408 + AT_rich Low_complexity Low_complexity 1 35 0 253 349 32 8 chr3 33572572 33572698 -193951880 + MIR SINE MIR 59 187 -75 669 288 68 17 chr3 33572762 33572998 -193951580 + MIR SINE MIR 15 262 0 6677 146 39 11 chr3 33573162 33573809 -193950769 - Tigger1 DNA MER2_type 0 2418 1722 2270 93 3 3 chr3 33573809 33574110 -193950468 - AluY SINE Alu -8 303 3 6677 146 39 11 chr3 33574110 33574635 -193949943 - Tigger1 DNA MER2_type -696 1722 1213 215 79 26 0 chr3 33575079 33575117 -193949461 + (TA)n Simple_repeat Simple_repeat 2 40 0 313 326 49 0 chr3 33575147 33575291 -193949287 + L1M4 LINE L1 2734 2884 -3262 306 329 62 33 chr3 33575312 33575522 -193949056 + L1M4 LINE L1 3272 3487 -2659 330 297 117 23 chr3 33575711 33575839 -193948739 + L1M4 LINE L1 3723 3862 -2284 526 291 98 37 chr3 33575860 33576434 -193948144 + L1M4 LINE L1 3928 4536 -1610 330 67 0 0 chr3 33576488 33576533 -193948045 + (TG)n Simple_repeat Simple_repeat 2 46 0 22 35 0 0 chr3 33576584 33576613 -193947965 + AT_rich Low_complexity Low_complexity 1 29 0 3531 44 0 5 chr3 33576633 33577069 -193947509 - L1PA5 LINE L1 -1 6153 5720 344 303 40 34 chr3 33577069 33577244 -193947334 + L1M4 LINE L1 4672 4847 -1299 459 270 107 19 chr3 33577412 33577627 -193946951 + L1M4 LINE L1 5106 5339 -807 1758 78 4 0 chr3 33577677 33577919 -193946659 + L1PA13 LINE L1 5920 6162 -1 22 35 0 0 chr3 33578689 33578718 -193945860 + AT_rich Low_complexity Low_complexity 1 29 0 42624 47 3 17 chr3 33579504 33585746 -193938832 - L1PA4 LINE L1 -2 6153 1 500 235 88 74 chr3 33586551 33586768 -193937810 - MLT1J LTR MaLR -2 509 290 556 268 34 39 chr3 33586811 33587016 -193937562 - MLT1J LTR MaLR -297 214 11 366 275 17 17 chr3 33587268 33587388 -193937190 + LTR33 LTR ERVL 327 446 -75 544 216 20 0 chr3 33587593 33587695 -193936883 - MER5A DNA MER1_type 0 189 86 5448 116 34 9 chr3 33587702 33588637 -193935941 - L1PB2 LINE L1 0 6151 5214 656 232 0 1 chr3 33588634 33588817 -193935761 + L1PB2 LINE L1 5049 5229 -917 * 277 100 0 0 chr3 33588825 33588865 -193935713 - L1MA1 LINE L1 -7 6295 6256 311 100 0 0 chr3 33588865 33588905 -193935673 - MER5A DNA MER1_type -149 40 1 202 247 56 0 chr3 33589646 33589735 -193934843 + (TA)n Simple_repeat Simple_repeat 1 94 0 587 200 0 17 chr3 33591099 33591214 -193933364 - L2 LINE L2 0 3313 3201 272 295 62 36 chr3 33591714 33591826 -193932752 + L2 LINE L2 3158 3272 0 444 305 0 40 chr3 33591889 33592066 -193932512 - MIR SINE MIR -11 251 82 432 289 74 38 chr3 33592398 33592717 -193931861 + L1MC4a LINE L1 5635 5822 -340 5223 169 15 11 chr3 33643196 33644303 -193880275 + L1PB4 LINE L1 4364 5485 -671 2109 91 0 4 chr3 33644303 33644577 -193880001 + AluY SINE Alu 23 295 -16 5223 169 15 11 chr3 33644577 33645244 -193879334 + L1PB4 LINE L1 5485 6148 -8 2425 57 7 7 chr3 33645254 33645553 -193879025 + AluY SINE Alu 1 299 -12 2380 167 21 15 chr3 33645558 33646031 -193878547 - L1MA7 LINE L1 -145 6146 5671 1160 149 70 9 chr3 33646035 33646249 -193878329 - THE1B LTR MaLR -137 227 1 11708 95 6 2 chr3 33646249 33647823 -193876755 - THE1B-int LTR MaLR 0 1580 1 2040 131 98 15 chr3 33647823 33648159 -193876419 - THE1B LTR MaLR 0 364 1 830 298 86 32 chr3 33648614 33648828 -193875750 + LTR16C LTR ERVL 36 237 -254 1783 197 65 18 chr3 33648828 33649274 -193875304 - MLT1C LTR MaLR 0 467 1 830 298 86 32 chr3 33649274 33649492 -193875086 + LTR16C LTR ERVL 237 491 0 221 366 14 0 chr3 33650665 33650736 -193873842 + L2 LINE L2 3201 3272 0 273 320 162 17 chr3 33651606 33651829 -193872749 - MIR SINE MIR -1 261 2 3731 158 29 6 chr3 33651935 33652624 -193871954 - MER50 LTR ERV1 -23 711 7 592 312 63 61 chr3 33653836 33654342 -193870236 + MLT1K LTR MaLR 76 582 -6 890 221 103 0 chr3 33654466 33654661 -193869917 + MER20 DNA MER1_type 1 215 -4 266 282 107 19 chr3 33654725 33654828 -193869750 - L2 LINE L2 -1 3271 3160 186 43 0 0 chr3 33655096 33655119 -193869459 + (T)n Simple_repeat Simple_repeat 1 23 0 258 308 106 0 chr3 33656248 33656352 -193868226 - MIR SINE MIR 0 262 148 1442 216 51 100 chr3 33656360 33657121 -193867457 - MER49 LTR ERV1 -28 895 1 4872 175 17 5 chr3 33657229 33658879 -193865699 - L1PB4 LINE L1 0 6156 4492 1671 52 0 44 chr3 33658990 33659219 -193865359 + LTR17 LTR ERV1 108 326 -454 205 214 34 22 chr3 33659768 33659857 -193864721 + (TTATA)n Simple_repeat Simple_repeat 4 93 0 29 84 0 0 chr3 33659858 33659929 -193864649 + AT_rich Low_complexity Low_complexity 1 71 0 187 80 23 68 chr3 33659950 33660038 -193864540 + (TAA)n Simple_repeat Simple_repeat 3 86 0 418 265 234 4 chr3 33660113 33660370 -193864208 - L1ME3A LINE L1 -48 6122 5807 468 285 19 5 chr3 33660383 33660590 -193863988 - L1M4 LINE L1 -3404 2742 2533 228 282 56 0 chr3 33660590 33660661 -193863917 - MIR3 SINE MIR -24 184 110 539 291 19 0 chr3 33660672 33660830 -193863748 - MIR SINE MIR -10 252 92 195 243 29 71 chr3 33660910 33660980 -193863598 - L2 LINE L2 -6 3266 3200 396 0 0 0 chr3 33662004 33662048 -193862530 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 629 226 0 22 chr3 33662662 33662799 -193861779 + LTR16A LTR ERVL 315 448 -2 231 341 40 0 chr3 33664697 33664823 -193859755 - L1ME3A LINE L1 -1997 5811 5681 1997 142 19 45 chr3 33664942 33665316 -193859262 - THE1B LTR MaLR 0 364 1 327 351 83 66 chr3 33665361 33665723 -193858855 + L2 LINE L2 2853 3220 -52 3849 177 42 7 chr3 33666646 33667787 -193856791 - L1MB3 LINE L1 -143 6040 4855 875 325 13 24 chr3 33667804 33668182 -193856396 + L1PA16 LINE L1 788 1161 -6413 12114 217 40 30 chr3 33668858 33669708 -193854870 + L1PA16 LINE L1 2182 3022 -4582 2245 117 144 5 chr3 33669708 33670083 -193854495 + MSTA LTR MaLR 2 428 0 12114 217 40 30 chr3 33670083 33670331 -193854247 + L1PA16 LINE L1 3022 3266 -4338 1625 184 3 55 chr3 33670331 33670658 -193853920 - AluJb SINE Alu -2 310 1 12114 217 40 30 chr3 33670658 33674884 -193849694 + L1PA16 LINE L1 3266 7601 -3 419 236 32 8 chr3 33674879 33675002 -193849576 - L1MB3 LINE L1 -1286 4860 4735 * 35189 85 15 15 chr3 33674998 33681139 -193843439 - L1PA6 LINE L1 -4 6150 11 1863 200 23 40 chr3 33681157 33681220 -193843358 - L1MB3 LINE L1 -1392 4754 4691 691 164 8 8 chr3 33681220 33681348 -193843230 - L1MC1 LINE L1 0 6333 6206 1863 200 23 40 chr3 33681348 33681854 -193842724 - L1MB3 LINE L1 -1455 4691 4195 346 320 148 8 chr3 33681866 33682231 -193842347 - L1MC1 LINE L1 -1992 5816 5401 2698 240 30 72 chr3 33682297 33683101 -193841477 - L1ME1 LINE L1 -5 6230 5394 252 0 0 0 chr3 33683101 33683129 -193841449 + (TG)n Simple_repeat Simple_repeat 1 28 0 2698 240 30 72 chr3 33683129 33684151 -193840427 - L1ME1 LINE L1 -841 5394 2582 561 275 73 44 chr3 33684141 33684621 -193839957 - L1ME1 LINE L1 -4189 2207 1714 * 216 0 0 0 chr3 33686356 33686380 -193838198 + (T)n Simple_repeat Simple_repeat 1 24 0 484 300 33 46 chr3 33686473 33686713 -193837865 - L2 LINE L2 -4 3309 3073 207 219 0 0 chr3 33687560 33687601 -193836977 + (TA)n Simple_repeat Simple_repeat 2 42 0 1724 161 51 46 chr3 33688300 33688673 -193835905 + THE1C LTR MaLR 1 375 0 2335 121 0 0 chr3 33688736 33689043 -193835535 - AluSg SINE Alu -3 307 1 361 355 91 0 chr3 33689043 33689229 -193835349 - MIR SINE MIR -58 204 2 378 276 51 29 chr3 33689411 33689693 -193834885 + L1M3c LINE L1 165 890 -5321 726 92 0 84 chr3 33689700 33689831 -193834747 - MLT2A2 LTR ERVL -332 121 2 1165 199 8 34 chr3 33689833 33690125 -193834453 + L1MA9 LINE L1 4562 4846 -1300 2056 164 140 0 chr3 33690125 33690439 -193834139 + L1MA9 LINE L1 5784 6185 -127 210 37 0 0 chr3 33690439 33690466 -193834112 + (CA)n Simple_repeat Simple_repeat 2 28 0 2056 164 140 0 chr3 33690466 33690615 -193833963 + L1MA9 LINE L1 6185 6312 0 2262 118 51 25 chr3 33690655 33691010 -193833568 + THE1B LTR MaLR 1 364 0 1597 176 61 58 chr3 33691039 33691402 -193833176 + MLT1A1 LTR MaLR 2 365 0 180 200 0 0 chr3 33692267 33692307 -193832271 + GA-rich Low_complexity Low_complexity 2 41 0 216 345 119 5 chr3 33692890 33693084 -193831494 - MIR SINE MIR -7 255 40 412 237 35 0 chr3 33693104 33693218 -193831360 + MLT1H1 LTR MaLR 1 118 -477 5956 78 12 12 chr3 33693218 33694064 -193830514 + L1MA1 LINE L1 5449 6294 -8 1149 130 0 0 chr3 33694084 33694238 -193830340 - AluSg/x SINE Alu -27 285 132 21 0 0 0 chr3 33694238 33694259 -193830319 + AT_rich Low_complexity Low_complexity 1 21 0 1249 259 50 41 chr3 33694265 33694682 -193829896 + MLT1H1 LTR MaLR 69 489 -66 1776 177 14 0 chr3 33694740 33695023 -193829555 + AluJo SINE Alu 1 287 -25 387 311 86 43 chr3 33696526 33696735 -193827843 + MIR SINE MIR 2 219 -43 296 323 50 0 chr3 33697080 33697179 -193827399 + L2 LINE L2 3209 3312 -1 2021 113 42 58 chr3 33697277 33697657 -193826921 + THE1C LTR MaLR 1 374 -1 477 148 0 0 chr3 33697657 33697738 -193826840 + (TTCC)n Simple_repeat Simple_repeat 3 83 0 392 218 323 8 chr3 33698003 33698136 -193826442 + MER5A DNA MER1_type 15 189 0 381 197 0 14 chr3 33698213 33698284 -193826294 - LTR35 LTR ERV1 -43 575 506 213 39 0 0 chr3 33698287 33698313 -193826265 + (GA)n Simple_repeat Simple_repeat 1 26 0 250 196 0 0 chr3 33698432 33698483 -193826095 - LTR43 LTR ERV1 -325 277 227 3281 232 131 3 chr3 33698493 33699582 -193824996 + L1PB1 LINE L1 6 1383 -5480 * 12478 191 17 8 chr3 33699580 33703066 -193821512 + L1PB1 LINE L1 2984 6507 -360 300 70 0 0 chr3 33703066 33703109 -193821469 + (TA)n Simple_repeat Simple_repeat 2 44 0 12478 191 17 8 chr3 33703109 33703470 -193821108 + L1PB1 LINE L1 6507 6863 -4 30 27 0 0 chr3 33705647 33705684 -193818894 + AT_rich Low_complexity Low_complexity 1 37 0 1508 99 0 0 chr3 33707526 33707718 -193816860 - AluSx SINE Alu -81 231 40 1628 150 74 9 chr3 33707736 33708062 -193816516 + MER47A DNA MER2_type 18 364 -2 369 0 0 0 chr3 33708128 33708169 -193816409 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 2925 61 0 12 chr3 33708170 33708581 -193815997 - LTR7 LTR ERV1 -44 406 1 25530 90 10 12 chr3 33708581 33713228 -193811350 - HERVH LTR ERV1 0 7713 3139 14223 101 10 22 chr3 33713207 33715989 -193808589 - HERVH LTR ERV1 -4718 2995 2 * 731 78 0 10 chr3 33715991 33716094 -193808484 - LTR7 LTR ERV1 -2 448 347 756 197 7 14 chr3 33716096 33716243 -193808335 - MER20 DNA MER1_type -71 148 3 592 277 136 38 chr3 33716646 33717043 -193807535 - MLT1J2 LTR MaLR -2 448 13 274 232 250 9 chr3 33718508 33718732 -193805846 - L1ME4a LINE L1 -50 6071 5794 240 293 20 0 chr3 33718750 33718849 -193805729 - L1ME4a LINE L1 -405 5716 5616 2492 54 37 0 chr3 33719316 33719614 -193804964 + AluY SINE Alu 1 309 -2 308 328 0 0 chr3 33719834 33719921 -193804657 - L2 LINE L2 -16 3256 3185 517 86 0 0 chr3 33720337 33720407 -193804171 + AluS SINE Alu 1 70 -242 858 123 0 0 chr3 33720407 33720537 -193804041 + AluSp/q SINE Alu 174 303 -10 246 116 0 0 chr3 33721459 33721502 -193803076 + (TA)n Simple_repeat Simple_repeat 1 43 0 2753 188 45 22 chr3 33722431 33722608 -193801970 - L1MC4 LINE L1 0 8042 7870 2154 151 14 22 chr3 33722608 33722973 -193801605 + THE1B LTR MaLR 1 362 -2 2753 188 45 22 chr3 33722973 33723417 -193801161 - L1MC4 LINE L1 -172 7870 7407 909 210 0 0 chr3 33723503 33723670 -193800908 - FRAM SINE Alu -9 167 1 502 301 78 45 chr3 33723688 33723997 -193800581 - L1ME LINE L1 -401 5720 5402 * 14312 192 31 10 chr3 33723990 33729359 -193795219 - L1PB1 LINE L1 -1 6866 1392 784 229 29 24 chr3 33729336 33729546 -193795032 - L1PB1 LINE L1 -6647 216 6 * 2263 92 0 7 chr3 33730279 33730584 -193793994 - AluY SINE Alu -8 303 1 534 16 0 0 chr3 33730627 33730690 -193793888 + (CA)n Simple_repeat Simple_repeat 1 63 0 243 103 0 0 chr3 33730690 33730729 -193793849 + (TC)n Simple_repeat Simple_repeat 2 40 0 21 36 0 0 chr3 33731579 33731607 -193792971 + AT_rich Low_complexity Low_complexity 1 28 0 244 292 35 26 chr3 33733411 33733524 -193791054 + L1ME LINE L1 5506 5586 -598 1011 273 61 87 chr3 33733524 33734062 -193790516 - MLT1H1 LTR MaLR 0 555 32 372 251 101 14 chr3 33734193 33734338 -193790240 + L1ME LINE L1 5669 5841 -333 2288 107 0 0 chr3 33734591 33734899 -193789679 - AluSq SINE Alu -5 308 1 390 236 28 19 chr3 33735605 33735711 -193788867 + LTR33 LTR ERVL 18 124 -397 263 292 150 0 chr3 33737194 33737314 -193787264 - MLT1L LTR MaLR -477 138 1 369 319 65 18 chr3 33737314 33737483 -193787095 - MIR SINE MIR -21 241 65 285 283 44 35 chr3 33737504 33737617 -193786961 - L2 LINE L2 -36 3277 3164 2771 65 3 0 chr3 33740243 33740597 -193783981 - L1PA7 LINE L1 -1 6153 5799 4559 97 3 3 chr3 33740598 33741260 -193783318 + L1P LINE L1 4397 5058 -1088 2238 310 117 27 chr3 33741260 33742666 -193781912 + L2 LINE L2 1521 3058 -255 246 277 10 40 chr3 33744664 33744765 -193779813 + L1ME3A LINE L1 5689 5786 -2022 721 217 72 0 chr3 33745042 33745194 -193779384 - FRAM SINE Alu -5 171 9 2177 174 38 33 chr3 33745201 33745627 -193778951 + MSTA LTR MaLR 1 428 0 195 42 0 0 chr3 33746073 33746097 -193778481 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 256 321 37 0 chr3 33746349 33746430 -193778148 - MIR SINE MIR -109 153 70 21 0 0 0 chr3 33746469 33746490 -193778088 + AT_rich Low_complexity Low_complexity 1 21 0 272 250 22 11 chr3 33746914 33747006 -193777572 - MLT1L LTR MaLR -10 605 513 21 0 0 0 chr3 33748614 33748635 -193775943 + AT_rich Low_complexity Low_complexity 1 21 0 186 333 56 0 chr3 33749265 33749337 -193775241 + L3b LINE CR1 1170 1245 -338 226 278 174 43 chr3 33749662 33749777 -193774801 - MIR3 SINE MIR -65 143 14 537 303 48 19 chr3 33750021 33750229 -193774349 + MIR SINE MIR 49 262 0 1073 244 30 118 chr3 33750341 33750772 -193773806 + MLT1I LTR MaLR 12 404 -5 21 0 0 0 chr3 33751519 33751540 -193773038 + AT_rich Low_complexity Low_complexity 1 21 0 272 281 79 0 chr3 33752736 33752825 -193771753 - MIR SINE MIR -69 139 44 544 276 35 12 chr3 33753032 33753202 -193771376 + MIR SINE MIR 12 185 -77 268 360 18 0 chr3 33753617 33753731 -193770847 - MIR3 SINE MIR -12 196 81 812 159 118 18 chr3 33754461 33754631 -193769947 - MER5A DNA MER1_type -1 188 2 184 245 75 0 chr3 33756528 33756581 -193767997 + MIR SINE MIR 173 229 -33 552 290 86 26 chr3 33757543 33757812 -193766766 + L1ME3A LINE L1 5877 6161 -9 1064 246 88 13 chr3 33758502 33758876 -193765702 + LTR48B LTR ERV1 243 644 0 2841 176 72 28 chr3 33758878 33759458 -193765120 + LTR48B-int LTR ERV1 1 606 -5725 15013 230 30 19 chr3 33759475 33761830 -193762748 - L1PA15 LINE L1 -4 7599 5271 1842 123 120 30 chr3 33761830 33762163 -193762415 + THE1B LTR MaLR 1 363 -1 15013 230 30 19 chr3 33762163 33765748 -193758830 - L1PA15 LINE L1 -2332 5271 1587 607 337 14 24 chr3 33765752 33766043 -193758535 - L1PA15 LINE L1 -7178 403 116 1314 209 14 87 chr3 33766044 33766388 -193758190 + LTR48B-int LTR ERV1 597 915 -5416 467 200 50 67 chr3 33766478 33766598 -193757980 + LTR48B-int LTR ERV1 1084 1201 -5130 326 239 28 0 chr3 33766606 33766677 -193757901 + tRNA-Glu-GAG tRNA tRNA 3 75 0 207 333 0 0 chr3 33767368 33767434 -193757144 + GA-rich Low_complexity Low_complexity 1 66 0 1828 177 10 6 chr3 33768192 33768503 -193756075 + AluJb SINE Alu 1 312 0 2832 170 55 96 chr3 33768619 33769336 -193755242 + LTR48B-int LTR ERV1 1283 1961 -4370 198 0 0 0 chr3 33769336 33769358 -193755220 + (CG)n Simple_repeat Simple_repeat 1 22 0 2832 170 55 96 chr3 33769358 33769493 -193755085 + LTR48B-int LTR ERV1 1961 2100 -4231 680 164 55 58 chr3 33769509 33769689 -193754889 + LTR48B-int LTR ERV1 1150 3108 -3223 282 216 9 103 chr3 33769699 33769815 -193754763 + LTR48B-int LTR ERV1 3281 3385 -2561 7506 189 64 59 chr3 33769959 33770472 -193754106 + LTR48B-int LTR ERV1 3721 4230 -2101 10760 91 4 4 chr3 33770472 33770814 -193753764 - L1PA8 LINE L1 -7 6165 5824 222 37 0 0 chr3 33770814 33770841 -193753737 + (TA)n Simple_repeat Simple_repeat 2 28 0 10760 91 4 4 chr3 33770841 33772778 -193751800 - L1PA8 LINE L1 -347 5825 3849 7506 189 64 59 chr3 33772778 33774674 -193749904 + LTR48B-int LTR ERV1 4230 6173 -158 416 138 126 46 chr3 33774770 33774857 -193749721 + LTR48B LTR ERV1 3 96 -548 2141 196 81 56 chr3 33774868 33775496 -193749082 + LTR48B LTR ERV1 1 644 0 453 258 78 36 chr3 33775606 33775773 -193748805 + MER5A DNA MER1_type 16 189 0 543 191 113 43 chr3 33776841 33776982 -193747596 + MER20 DNA MER1_type 45 195 -24 11066 34 1 1 chr3 33827760 33829187 -193695391 - L1P LINE L1 -2182 3964 2537 7454 32 0 1 chr3 33829184 33830130 -193694448 + L1P LINE L1 1607 2551 -3595 * 605 326 54 4 chr3 33830461 33830722 -193693856 + MLT1I LTR MaLR 27 300 -109 2563 166 125 22 chr3 33830749 33831332 -193693246 - MER73 LTR ERVL 0 644 2 252 348 33 0 chr3 33831396 33831488 -193693090 - L2 LINE L2 0 3272 3178 518 179 41 41 chr3 33831882 33832027 -193692551 + MLT1I LTR MaLR 439 583 -7 711 210 68 6 chr3 33832452 33832628 -193691950 - MER5A DNA MER1_type 0 189 3 227 302 47 0 chr3 33832645 33832731 -193691847 - MER117 DNA MER1_type -19 178 89 396 0 0 0 chr3 33833135 33833179 -193691399 + (CA)n Simple_repeat Simple_repeat 1 44 0 692 282 56 9 chr3 33833984 33834197 -193690381 - MIR SINE MIR 0 262 40 2001 129 7 23 chr3 33834599 33834902 -193689676 + AluSg SINE Alu 1 298 -12 21 0 0 0 chr3 33835003 33835024 -193689554 + AT_rich Low_complexity Low_complexity 1 21 0 396 342 86 45 chr3 33835079 33835497 -193689081 + L2 LINE L2 237 671 -2643 182 383 94 0 chr3 33835520 33835648 -193688930 + L2 LINE L2 1003 1142 -2172 645 273 134 4 chr3 33835707 33835945 -193688633 - L2 LINE L2 -500 2814 2546 1908 135 7 21 chr3 33836909 33837198 -193687380 + AluSg SINE Alu 1 285 -25 396 167 0 0 chr3 33837610 33837682 -193686896 + (TA)n Simple_repeat Simple_repeat 1 72 0 1162 235 61 12 chr3 33838842 33839170 -193685408 + MER2 DNA MER2_type 1 344 0 284 261 39 23 chr3 33839916 33840046 -193684532 + L1M4 LINE L1 2932 3063 -3083 238 281 146 0 chr3 33840446 33840528 -193684050 + MER5B DNA MER1_type 8 101 -77 1939 115 35 45 chr3 33841439 33841752 -193682826 + AluSx SINE Alu 1 310 -2 379 221 0 0 chr3 33841760 33841837 -193682741 + AluJ/FRAM SINE Alu 226 302 0 350 304 32 0 chr3 33841849 33841974 -193682604 + L1MEc LINE L1 1032 1160 -5236 715 368 97 2 chr3 33841974 33842428 -193682150 - ERVL LTR ERVL -3210 2554 2058 904 160 5 60 chr3 33842506 33842706 -193681872 + L1MA8 LINE L1 5966 6154 -137 1264 125 6 0 chr3 33842706 33842882 -193681696 + AluSp SINE Alu 106 282 -31 644 159 8 0 chr3 33842882 33843014 -193681564 + L1MA8 LINE L1 6154 6286 -5 266 369 34 6 chr3 33843049 33843228 -193681350 - ERVL LTR ERVL -3699 1955 1772 2169 115 0 7 chr3 33844455 33844760 -193679818 + AluSx SINE Alu 1 303 -9 1057 99 0 44 chr3 33846452 33846634 -193677944 + L1MA1 LINE L1 6129 6302 0 1753 187 14 14 chr3 33846642 33847006 -193677572 + L1MD1 LINE L1 5861 6224 -18 24 67 0 0 chr3 33847047 33847092 -193677486 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr3 33847145 33847166 -193677412 + AT_rich Low_complexity Low_complexity 1 21 0 201 227 0 0 chr3 33847287 33847331 -193677247 + (TCCA)n Simple_repeat Simple_repeat 2 45 0 265 325 0 12 chr3 33848198 33848278 -193676300 - L2 LINE L2 -4 3268 3190 9792 30 0 0 chr3 33848482 33850419 -193674159 + L1PA3 LINE L1 4215 6152 -3 379 285 15 15 chr3 33852306 33852436 -193672142 - MER117 DNA MER1_type -65 132 3 213 357 48 24 chr3 33852600 33852726 -193671852 + L2 LINE L2 3140 3268 -4 567 127 25 0 chr3 33852912 33852991 -193671587 + FRAM SINE Alu 61 141 -35 551 289 13 0 chr3 33853961 33854110 -193670468 + ERVL-C1 LTR ERVL 552 702 -5062 1732 296 62 15 chr3 33854147 33854951 -193669627 + ERVL-C1 LTR ERVL 813 1636 -4018 2072 236 10 20 chr3 33854952 33855448 -193669130 + ERVL-C1 LTR ERVL 3762 4252 -1512 437 278 9 0 chr3 33855462 33855570 -193669008 - ERVL LTR ERVL -1384 4380 4272 1306 229 15 15 chr3 33855570 33855897 -193668681 + MLT1A1 LTR MaLR 28 354 -11 829 199 13 35 chr3 33856019 33856245 -193668333 + ERVL-C1 LTR ERVL 5534 5754 -10 634 230 0 30 chr3 33856247 33856412 -193668166 + MLT2C1 LTR ERVL 1 160 -237 525 276 78 10 chr3 33856294 33856486 -193668092 + MLT1E3 LTR MaLR 64 268 -356 * 23 0 0 0 chr3 33856636 33856659 -193667919 + AT_rich Low_complexity Low_complexity 1 23 0 386 69 17 0 chr3 33856678 33856736 -193667842 + (TG)n Simple_repeat Simple_repeat 2 60 0 321 256 39 0 chr3 33856786 33856864 -193667714 - LTR50 LTR ERVL -714 81 1 282 219 47 0 chr3 33857587 33857651 -193666927 - Charlie8 DNA MER1_type -1001 1416 1350 * 443 224 10 0 chr3 33857649 33857747 -193666831 + MLT2C1 LTR ERVL 21 119 -278 * 543 262 84 19 chr3 33857738 33857952 -193666626 - Charlie8 DNA MER1_type -2152 265 38 29 28 0 0 chr3 33859161 33859197 -193665381 + AT_rich Low_complexity Low_complexity 1 36 0 2243 74 0 14 chr3 33859792 33860077 -193664501 - AluY SINE Alu -30 281 1 253 347 50 8 chr3 33860093 33860214 -193664364 + MIR SINE MIR 19 144 -118 324 239 64 18 chr3 33860553 33860662 -193663916 - MLT1H LTR MaLR 0 549 436 651 226 67 16 chr3 33860856 33861073 -193663505 - MLT1H LTR MaLR -310 239 4 450 265 0 0 chr3 33861076 33861174 -193663404 - MIR SINE MIR -62 146 49 494 283 71 38 chr3 33863019 33863231 -193661347 - MIR SINE MIR -14 248 30 2504 122 0 11 chr3 33864024 33864392 -193660186 - THE1B LTR MaLR 0 364 1 183 42 0 0 chr3 33864440 33864464 -193660114 + (TC)n Simple_repeat Simple_repeat 1 24 0 298 234 26 0 chr3 33864645 33864722 -193659856 - MARNA DNA Mariner -246 340 262 1218 225 103 0 chr3 33864842 33865153 -193659425 + MER2 DNA MER2_type 1 343 -1 287 329 56 40 chr3 33865758 33866007 -193658571 - LTR16B LTR ERVL -175 289 37 269 291 71 39 chr3 33867003 33867130 -193657448 - MIR SINE MIR -57 151 21 237 254 51 0 chr3 33867177 33867236 -193657342 + L2 LINE L2 3208 3269 -3 21 0 0 0 chr3 33867779 33867800 -193656778 + AT_rich Low_complexity Low_complexity 1 21 0 708 216 8 0 chr3 33867807 33867932 -193656646 - FLAM_A SINE Alu -6 127 2 979 229 52 16 chr3 33868003 33868308 -193656270 + L1ME2 LINE L1 5726 6041 -123 284 164 0 0 chr3 33868302 33868357 -193656221 + L1ME3 LINE L1 6100 6154 -8 * 198 231 154 22 chr3 33868814 33868905 -193655673 + MIR SINE MIR 149 251 -11 2192 111 0 7 chr3 33868944 33869241 -193655337 - AluSg SINE Alu -15 295 1 2431 86 3 0 chr3 33869573 33869874 -193654704 - AluSp SINE Alu -11 302 1 349 313 11 57 chr3 33870480 33870656 -193653922 + MIR SINE MIR 13 180 -82 180 0 0 0 chr3 33870673 33870693 -193653885 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2342 84 0 3 chr3 33870700 33870997 -193653581 - AluY SINE Alu -15 296 1 2301 98 55 0 chr3 33870999 33871345 -193653233 - L1PA13 LINE L1 -5 6158 5794 5116 103 1 0 chr3 33871356 33872105 -193652473 + L1P LINE L1 11 760 -5386 299 276 43 86 chr3 33872254 33872417 -193652161 - MLT1F1 LTR MaLR -302 265 110 371 278 111 14 chr3 33872605 33872749 -193651829 - MIR3 SINE MIR -30 178 21 559 271 32 7 chr3 33872753 33872908 -193651670 + MIR SINE MIR 92 250 -12 1535 276 91 79 chr3 33873235 33873996 -193650582 + L2 LINE L2 2192 2991 -322 2248 110 3 3 chr3 33873996 33874306 -193650272 + AluSx SINE Alu 3 312 0 1535 276 91 79 chr3 33874306 33874633 -193649945 + L2 LINE L2 2991 3312 -1 365 371 38 0 chr3 33874795 33874981 -193649597 + L2 LINE L2 2259 2451 -863 731 327 62 62 chr3 33875071 33875655 -193648923 - L2 LINE L2 -2150 1164 581 209 370 20 10 chr3 33875732 33875832 -193648746 + L2 LINE L2 2538 2638 -676 255 280 47 13 chr3 33876095 33876247 -193648331 - MER20B DNA MER1_type 0 219 57 377 86 17 0 chr3 33878070 33878128 -193646450 + (TC)n Simple_repeat Simple_repeat 2 60 0 572 199 210 32 chr3 33878699 33878885 -193645693 + MER20 DNA MER1_type 1 219 0 348 262 48 0 chr3 33878919 33879003 -193645575 + MIR SINE MIR 63 150 -112 181 396 93 27 chr3 33880276 33880501 -193644077 + L2 LINE L2 2934 3173 -99 247 345 24 12 chr3 33881858 33881942 -193642636 - L2 LINE L2 -26 3246 3162 1656 192 6 28 chr3 33882121 33882438 -193642140 - AluJb SINE Alu -2 310 1 1829 154 143 16 chr3 33882781 33883158 -193641420 + MSTA LTR MaLR 1 425 -3 5509 186 10 3 chr3 33883374 33884444 -193640134 + L1P LINE L1 3491 4568 -1578 489 288 76 34 chr3 33884554 33884790 -193639788 + MIR SINE MIR 17 262 0 194 301 119 42 chr3 33884963 33885106 -193639472 + L2 LINE L2 3160 3313 0 187 310 0 35 chr3 33885170 33885228 -193639350 + L2 LINE L2 3209 3264 -8 200 239 43 0 chr3 33886039 33886085 -193638493 - MER91A DNA MER1_type -131 65 18 * 330 225 35 92 chr3 33886066 33886208 -193638370 + MIR SINE MIR 9 142 -120 1483 244 64 20 chr3 33886544 33886983 -193637595 + L1ME3 LINE L1 5682 6139 -23 275 0 29 0 chr3 33887050 33887085 -193637493 + (TAGA)n Simple_repeat Simple_repeat 4 39 0 207 325 8 83 chr3 33888502 33888553 -193636025 - MIR SINE MIR -68 140 87 1022 198 5 0 chr3 33888553 33888740 -193635838 + MER5A DNA MER1_type 1 188 -1 207 325 8 83 chr3 33888740 33888808 -193635770 - MIR SINE MIR -121 87 30 620 304 110 10 chr3 33889209 33889508 -193635070 - MER102a DNA MER1_type -1 329 1 363 248 105 9 chr3 33891193 33891298 -193633280 - MIR3 SINE MIR -47 161 47 232 322 59 17 chr3 33891513 33891631 -193632947 + MIR SINE MIR 59 181 -81 755 206 72 12 chr3 33892927 33893376 -193631202 - L1ME3A LINE L1 -221 6343 5826 198 0 0 0 chr3 33893418 33893440 -193631138 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1677 131 43 46 chr3 33893441 33893723 -193630855 - AluSq SINE Alu -32 281 1 288 0 0 0 chr3 33893729 33893761 -193630817 + (T)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr3 33893791 33893812 -193630766 + AT_rich Low_complexity Low_complexity 1 21 0 42898 33 21 1 chr3 33893814 33899846 -193624732 - L1PA2 LINE L1 0 6155 1 466 305 40 44 chr3 33899848 33900120 -193624458 - L1ME3A LINE L1 -961 5579 5309 1004 282 88 52 chr3 33900121 33900927 -193623651 - L1ME3A LINE L1 -1335 5205 4371 657 304 97 10 chr3 33901090 33901554 -193623024 - L1MEc LINE L1 -4500 2040 1565 2862 96 2 0 chr3 33902475 33902869 -193621709 + L1PA8 LINE L1 5776 6170 -2 595 247 108 86 chr3 33903946 33904594 -193619984 - L1ME4a LINE L1 -12 6109 5448 2296 73 3 7 chr3 33905740 33906041 -193618537 + AluY SINE Alu 2 301 -10 249 331 47 0 chr3 33906150 33906277 -193618301 - L1ME LINE L1 -460 5661 5529 1539 190 53 9 chr3 33906291 33906612 -193617966 + MER2 DNA MER2_type 1 335 -10 43001 30 21 1 chr3 33907096 33913124 -193611454 - L1HS LINE L1 0 6155 4 418 140 43 0 chr3 33913638 33913731 -193610847 + GA-rich Low_complexity Low_complexity 3 99 0 330 245 82 20 chr3 33914542 33914640 -193609938 + MIR SINE MIR 36 139 -123 1889 131 139 18 chr3 33915093 33915430 -193609148 - MER83B LTR ERV1 0 378 1 1037 315 52 26 chr3 33915451 33915877 -193608701 - ERVL LTR ERVL -3478 2286 1850 307 336 21 7 chr3 33915922 33916065 -193608513 - ERVL LTR ERVL -3985 1779 1635 306 206 27 14 chr3 33916336 33916409 -193608169 - LTR33 LTR ERVL -26 495 422 519 17 0 0 chr3 33916800 33916860 -193607718 + (TG)n Simple_repeat Simple_repeat 2 61 0 26 30 0 0 chr3 33916926 33916959 -193607619 + AT_rich Low_complexity Low_complexity 1 33 0 279 0 0 0 chr3 33917232 33917263 -193607315 + (TG)n Simple_repeat Simple_repeat 2 32 0 231 260 13 13 chr3 33918125 33918202 -193606376 + (TTTA)n Simple_repeat Simple_repeat 1 77 0 201 393 0 0 chr3 33918256 33918317 -193606261 - L2 LINE L2 -85 3187 3127 305 285 70 91 chr3 33918819 33919061 -193605517 - MLT1I LTR MaLR -18 391 155 1686 193 3 3 chr3 33919089 33919400 -193605178 + AluJo SINE Alu 1 311 -1 874 260 87 4 chr3 33920332 33920574 -193604004 + MIR SINE MIR 1 262 0 1107 55 0 0 chr3 33920962 33921090 -193603488 + AluY SINE Alu 163 290 -21 22 0 0 0 chr3 33921119 33921141 -193603437 + AT_rich Low_complexity Low_complexity 1 22 0 2864 132 31 50 chr3 33921585 33921972 -193602606 - L1PA16 LINE L1 0 6166 5790 1676 134 0 0 chr3 33921972 33922203 -193602375 - AluJo SINE Alu -81 231 1 2864 132 31 50 chr3 33922203 33922337 -193602241 - L1PA16 LINE L1 -376 5790 5655 525 244 3 22 chr3 33922748 33922931 -193601647 - MLT1I LTR MaLR 0 409 275 392 363 132 16 chr3 33924428 33924800 -193599778 - L2 LINE L2 -639 2675 2261 21 0 0 0 chr3 33925741 33925762 -193598816 + AT_rich Low_complexity Low_complexity 1 21 0 311 281 117 42 chr3 33926123 33926483 -193598095 + L1ME4a LINE L1 5729 6115 -6 383 252 31 84 chr3 33928333 33928465 -193596113 - MLT1E LTR MaLR -421 121 1 183 129 0 0 chr3 33928671 33928702 -193595876 + (TTTC)n Simple_repeat Simple_repeat 1 31 0 345 271 286 0 chr3 33929395 33929535 -193595043 - MER5A DNA MER1_type -2 187 8 256 329 9 72 chr3 33929543 33929765 -193594813 - L2 LINE L2 -4 3309 3102 321 351 9 9 chr3 33929825 33929939 -193594639 - L2 LINE L2 -1 3271 3158 1020 246 58 13 chr3 33930018 33930488 -193594090 + MLT1F1 LTR MaLR 3 567 0 436 309 95 0 chr3 33930518 33930644 -193593934 - L2 LINE L2 -1 3271 3134 26 30 0 0 chr3 33930656 33930689 -193593889 + AT_rich Low_complexity Low_complexity 1 33 0 525 362 86 26 chr3 33930880 33931264 -193593314 - L2 LINE L2 -358 2956 2550 235 365 64 75 chr3 33931306 33931588 -193592990 + L2 LINE L2 2985 3263 -9 445 319 70 25 chr3 33932840 33932997 -193591581 - MIR SINE MIR -76 186 23 540 327 36 5 chr3 33933325 33933545 -193591033 + MER102b DNA MER1_type 85 311 -30 711 274 16 0 chr3 33933736 33933922 -193590656 - MER5A DNA MER1_type 0 189 1 501 17 0 0 chr3 33936358 33936416 -193588162 + (TG)n Simple_repeat Simple_repeat 1 58 0 339 65 0 0 chr3 33936416 33936462 -193588116 + (GA)n Simple_repeat Simple_repeat 2 47 0 1751 199 68 66 chr3 33937755 33938257 -193586321 + MLT1D LTR MaLR 3 505 0 259 222 93 0 chr3 33939554 33939608 -193584970 - L2 LINE L2 -3 3269 3211 181 245 20 0 chr3 33940057 33940106 -193584472 - MIR SINE MIR -78 130 81 243 0 0 0 chr3 33940198 33940225 -193584353 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 28 0 0 0 chr3 33941669 33941697 -193582881 + AT_rich Low_complexity Low_complexity 1 28 0 333 333 42 12 chr3 33942470 33942638 -193581940 - MIR SINE MIR -55 207 35 844 259 28 0 chr3 33942795 33943011 -193581567 + MER58A DNA MER1_type 3 224 0 9799 70 7 0 chr3 33944745 33946830 -193577748 + L1PA6 LINE L1 4046 6153 -1 1589 278 93 25 chr3 33946851 33947380 -193577198 - MLT1G LTR MaLR 0 590 26 292 281 257 12 chr3 33949093 33949264 -193575314 - MIR SINE MIR -16 246 34 544 256 57 34 chr3 33949989 33950312 -193574266 - L1ME LINE L1 -316 5805 5474 602 315 195 22 chr3 33950814 33951702 -193572876 + L2 LINE L2 1614 2654 -660 1045 195 188 11 chr3 33951708 33951980 -193572598 - MLT1D LTR MaLR 0 505 186 1242 191 0 42 chr3 33951982 33952218 -193572360 - AluJb SINE Alu -20 292 67 607 206 168 0 chr3 33952218 33952373 -193572205 - MLT1D LTR MaLR -324 181 1 4178 153 18 11 chr3 33952762 33953505 -193571073 + L1MA4 LINE L1 5269 6016 -284 316 146 49 0 chr3 33953509 33953591 -193570987 + L1MB4 LINE L1 6095 6180 0 21 57 0 0 chr3 33953607 33953642 -193570936 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr3 33953677 33953702 -193570876 + AT_rich Low_complexity Low_complexity 1 25 0 190 269 0 58 chr3 33954568 33954620 -193569958 - L2 LINE L2 -9 3263 3215 29 0 0 0 chr3 33954646 33954675 -193569903 + AT_rich Low_complexity Low_complexity 1 29 0 259 253 27 13 chr3 33955136 33955211 -193569367 - L1ME LINE L1 -496 5625 5550 344 325 64 16 chr3 33955340 33955528 -193569050 - L1ME LINE L1 -658 5463 5267 1039 265 99 31 chr3 33955662 33956270 -193568308 - HAL1b LINE L1 -283 1065 417 275 233 14 14 chr3 33956887 33956960 -193567618 + CT-rich Low_complexity Low_complexity 2 74 0 34 24 0 0 chr3 33957729 33957770 -193566808 + AT_rich Low_complexity Low_complexity 1 41 0 293 242 127 26 chr3 33958115 33958279 -193566299 + LTR39 LTR ERV1 1 375 -408 1037 248 26 23 chr3 33958319 33958624 -193565954 + MER4D LTR ERV1 455 894 -9 22 0 0 0 chr3 33958827 33958849 -193565729 + AT_rich Low_complexity Low_complexity 1 22 0 314 195 182 0 chr3 33960370 33960447 -193564131 - L2 LINE L2 -982 2332 2242 272 237 141 52 chr3 33960631 33960766 -193563812 - L2 LINE L2 -1222 2092 1946 180 0 0 0 chr3 33960916 33960936 -193563642 + (ATTAG)n Simple_repeat Simple_repeat 4 23 0 438 20 0 0 chr3 33960939 33960990 -193563588 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 405 304 95 46 chr3 33961405 33961588 -193562990 - MIR SINE MIR -23 185 25 424 168 2 24 chr3 33962064 33962164 -193562414 + LTR24B LTR ERV1 3 97 -368 766 258 53 42 chr3 33962202 33962562 -193562016 + LTR24B LTR ERV1 206 569 -7 416 147 67 0 chr3 33962591 33962666 -193561912 + MADE1 DNA Mariner 1 80 0 2268 88 0 7 chr3 33962694 33962990 -193561588 - AluY SINE Alu -17 294 1 1286 174 75 23 chr3 33963007 33963272 -193561306 + MLT1C LTR MaLR 5 283 -184 190 54 27 27 chr3 33963293 33963330 -193561248 + (TA)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr3 33963525 33963547 -193561031 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 33964971 33964993 -193559585 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 33965100 33965123 -193559455 + AT_rich Low_complexity Low_complexity 1 23 0 533 299 97 40 chr3 33965130 33965729 -193558849 + L1ME4a LINE L1 5478 6110 -11 377 288 112 21 chr3 33966944 33967177 -193557401 - L1ME4a LINE L1 -72 6049 5796 361 309 9 0 chr3 33967453 33967563 -193557015 + MIR SINE MIR 137 247 -15 2409 73 0 10 chr3 33968979 33969281 -193555297 - AluSc SINE Alu -10 299 1 629 206 120 40 chr3 33971361 33971536 -193553042 + MER5A DNA MER1_type 1 189 0 276 212 0 30 chr3 33972365 33972441 -193552137 + AluYb8 SINE Alu 132 192 -116 25 0 0 0 chr3 33972445 33972470 -193552108 + AT_rich Low_complexity Low_complexity 1 25 0 28 48 0 0 chr3 33972483 33972525 -193552053 + AT_rich Low_complexity Low_complexity 1 42 0 1810 264 65 7 chr3 33973145 33973729 -193550849 - L1ME3 LINE L1 -5 6157 5540 31446 95 7 13 chr3 33973940 33979409 -193545169 + L1PA7 LINE L1 719 6153 -1 231 242 121 0 chr3 33979575 33979666 -193544912 - L1ME4a LINE L1 0 6121 6020 484 308 96 20 chr3 33979730 33980074 -193544504 - L1ME4a LINE L1 -2124 5684 5315 377 307 86 29 chr3 33980324 33980604 -193543974 - L1ME4a LINE L1 -1776 4370 4075 24 32 0 0 chr3 33980660 33980691 -193543887 + AT_rich Low_complexity Low_complexity 1 31 0 287 340 9 19 chr3 33980811 33980992 -193543586 - L1ME4a LINE L1 -2309 3837 3656 239 310 14 0 chr3 33981626 33981697 -193542881 + MIR SINE MIR 81 152 -56 213 206 16 32 chr3 33981737 33981800 -193542778 + L2 LINE L2 3248 3309 -4 563 227 51 17 chr3 33983119 33983295 -193541283 + L1MA9 LINE L1 6083 6264 -48 26 30 0 0 chr3 33983304 33983337 -193541241 + AT_rich Low_complexity Low_complexity 1 33 0 480 104 26 0 chr3 33984509 33984586 -193539992 - MADE1 DNA Mariner 0 80 2 819 76 0 17 chr3 33984884 33985003 -193539575 - AluY SINE Alu -5 306 190 375 324 99 6 chr3 33985290 33985472 -193539106 + MIR SINE MIR 54 252 -10 305 175 50 0 chr3 33986645 33986725 -193537853 - L1ME4a LINE L1 -3 6118 6035 8666 27 1 1 chr3 33986883 33988685 -193535893 - L1PA3 LINE L1 0 6155 4354 373 337 107 36 chr3 33988744 33988996 -193535582 - L1ME LINE L1 -345 5776 5507 1820 177 92 16 chr3 33990891 33991325 -193533253 + MLT1C LTR MaLR 1 467 0 31 44 0 0 chr3 33991420 33991465 -193533113 + AT_rich Low_complexity Low_complexity 1 45 0 291 250 73 16 chr3 33991580 33991704 -193532874 - L1ME4a LINE L1 -3447 2699 2569 234 314 105 9 chr3 33992437 33992542 -193532036 + MIR3 SINE MIR 87 201 -7 379 76 0 30 chr3 33994840 33994906 -193529672 + (TA)n Simple_repeat Simple_repeat 2 65 0 461 123 0 0 chr3 34094908 34094981 -193429597 + Alu SINE Alu 238 310 -1 470 291 97 31 chr3 34094984 34095246 -193429332 - L1MC4a LINE L1 -1717 6091 5791 2365 82 0 3 chr3 34095246 34095550 -193429028 - AluSc SINE Alu -6 303 1 470 291 97 31 chr3 34095550 34095700 -193428878 - L1MC4a LINE L1 -2017 5791 5652 825 156 0 15 chr3 34095712 34095847 -193428731 + FLAM_C SINE Alu 1 133 0 1174 230 23 30 chr3 34095996 34096426 -193428152 - L1M4 LINE L1 -2970 3987 3561 * 5803 198 55 48 chr3 34096400 34097747 -193426831 - L1M4 LINE L1 -5329 1530 195 1585 161 75 11 chr3 34097747 34098026 -193426552 + AluJo SINE Alu 1 297 -15 5803 198 55 48 chr3 34098026 34098102 -193426476 - L1M4 LINE L1 -6664 195 121 2277 91 7 0 chr3 34098102 34098409 -193426169 - AluSp SINE Alu -4 309 1 5803 198 55 48 chr3 34098409 34098497 -193426081 - L1M4 LINE L1 -6738 121 6 1633 172 7 14 chr3 34098506 34098791 -193425787 - AluJo SINE Alu -19 293 11 266 261 8 34 chr3 34098921 34098986 -193425592 + (CATATA)n Simple_repeat Simple_repeat 1 64 -52 2106 109 3 0 chr3 34098986 34099292 -193425286 + AluSx SINE Alu 1 307 0 266 261 8 34 chr3 34099292 34099344 -193425234 + (CATATA)n Simple_repeat Simple_repeat 64 116 0 457 326 50 60 chr3 34099374 34099592 -193424986 + MIR SINE MIR 33 248 -14 400 244 219 0 chr3 34100833 34100997 -193423581 + MIR SINE MIR 63 262 0 713 218 0 0 chr3 34101291 34101415 -193423163 + FLAM_A SINE Alu 4 127 -6 2361 92 0 0 chr3 34101416 34101721 -193422857 + AluSx SINE Alu 1 305 -7 247 241 0 0 chr3 34102138 34102196 -193422382 + GA-rich Low_complexity Low_complexity 3 60 0 2037 105 14 7 chr3 34102521 34102806 -193421772 + AluSq SINE Alu 1 287 -26 323 309 0 0 chr3 34103305 34103389 -193421189 + L2 LINE L2 3182 3265 -7 204 317 39 39 chr3 34104433 34104537 -193420041 + MIR SINE MIR 48 151 -57 1044 137 24 6 chr3 34106033 34106201 -193418377 - AluSg/x SINE Alu -12 298 128 2309 78 10 3 chr3 34106306 34106614 -193417964 + AluSx SINE Alu 1 310 -2 510 287 36 18 chr3 34106903 34107070 -193417508 + MIR SINE MIR 89 258 -4 264 263 53 0 chr3 34108695 34108771 -193415807 - MIR SINE MIR -168 94 15 180 0 0 0 chr3 34109238 34109258 -193415320 + (A)n Simple_repeat Simple_repeat 1 20 0 217 193 34 57 chr3 34109586 34109674 -193414904 + C-rich Low_complexity Low_complexity 1 86 0 387 306 0 7 chr3 34112290 34112437 -193412141 + GA-rich Low_complexity Low_complexity 2 147 0 2369 64 0 52 chr3 34112778 34113106 -193411472 + AluY SINE Alu 1 311 0 617 247 52 6 chr3 34113824 34113988 -193410590 + MIR SINE MIR 17 186 -61 21 0 0 0 chr3 34114013 34114034 -193410544 + AT_rich Low_complexity Low_complexity 1 21 0 804 178 198 5 chr3 34114051 34114248 -193410330 - MIR SINE MIR -24 238 4 181 269 185 46 chr3 34116081 34116189 -193408389 - MIR3 SINE MIR -84 124 2 261 0 0 0 chr3 34117087 34117116 -193407462 + (TG)n Simple_repeat Simple_repeat 2 30 0 198 91 0 0 chr3 34118894 34118927 -193405651 + (TG)n Simple_repeat Simple_repeat 2 34 0 183 184 0 0 chr3 34119171 34119209 -193405369 + GA-rich Low_complexity Low_complexity 2 39 0 204 40 0 0 chr3 34121418 34121443 -193403135 + (CGG)n Simple_repeat Simple_repeat 1 25 0 208 224 0 17 chr3 34122016 34122074 -193402504 + (CGG)n Simple_repeat Simple_repeat 2 58 0 252 211 41 75 chr3 34122224 34122371 -193402207 + C-rich Low_complexity Low_complexity 2 143 0 219 362 0 0 chr3 34122445 34122539 -193402039 + G-rich Low_complexity Low_complexity 2 95 0 186 43 0 0 chr3 34124514 34124537 -193400041 + (TTA)n Simple_repeat Simple_repeat 2 24 0 243 146 0 0 chr3 34125342 34125383 -193399195 + (TG)n Simple_repeat Simple_repeat 2 42 0 1115 137 0 0 chr3 34126555 34126723 -193397855 + AluSg/x SINE Alu 135 302 -8 243 221 179 43 chr3 34126816 34126956 -193397622 - MIR SINE MIR -1 261 103 197 0 0 67 chr3 34126990 34127020 -193397558 + (TTTTTA)n Simple_repeat Simple_repeat 2 29 0 1972 89 3 21 chr3 34127284 34127566 -193397012 + AluSx SINE Alu 19 295 -17 934 147 52 31 chr3 34127747 34127938 -193396640 - MIR SINE MIR 0 262 68 2262 91 3 0 chr3 34131644 34131941 -193392637 - AluSx SINE Alu -14 298 1 2386 93 0 0 chr3 34132594 34132905 -193391673 - AluSx SINE Alu -1 311 1 1397 165 28 20 chr3 34133510 34133617 -193390961 + AluJo SINE Alu 27 132 -207 2112 117 0 0 chr3 34133617 34133907 -193390671 + AluSc SINE Alu 2 291 -18 1397 165 28 20 chr3 34133907 34134110 -193390468 + AluJo SINE Alu 132 339 0 1471 185 0 4 chr3 34134222 34134482 -193390096 + AluJo SINE Alu 36 294 -18 198 171 0 0 chr3 34137163 34137204 -193387374 + (TATG)n Simple_repeat Simple_repeat 2 42 0 238 267 14 34 chr3 34138881 34139001 -193385577 + C-rich Low_complexity Low_complexity 5 202 0 26 64 0 0 chr3 34139215 34139262 -193385316 + GC_rich Low_complexity Low_complexity 1 47 0 27 87 0 0 chr3 34139490 34139559 -193385019 + GC_rich Low_complexity Low_complexity 1 69 0 35 54 0 0 chr3 34139651 34139707 -193384871 + GC_rich Low_complexity Low_complexity 1 56 0 204 283 183 25 chr3 34241442 34241562 -193283016 - L2 LINE L2 0 3313 3175 2068 185 4 6 chr3 34242717 34243178 -193281400 - MER89 LTR ERV1 0 559 1 29 47 0 0 chr3 34243336 34243379 -193281199 + AT_rich Low_complexity Low_complexity 1 43 0 257 311 33 8 chr3 34243679 34243801 -193280777 - L1ME LINE L1 -514 5607 5483 632 234 0 29 chr3 34243962 34244099 -193280479 - FLAM_A SINE Alu 0 133 1 1566 201 0 22 chr3 34245400 34245718 -193278860 - MLT1A1 LTR MaLR -54 311 1 24 0 0 0 chr3 34246257 34246281 -193278297 + AT_rich Low_complexity Low_complexity 1 24 0 327 279 23 12 chr3 34246328 34246414 -193278164 - L2 LINE L2 -1 3312 3226 2019 130 3 43 chr3 34246468 34246790 -193277788 + AluSx SINE Alu 2 310 -2 195 240 0 40 chr3 34246858 34246908 -193277670 - L2 LINE L2 -85 3228 3181 360 266 19 38 chr3 34247814 34247950 -193276628 + MIR SINE MIR 11 143 -65 454 222 195 41 chr3 34250748 34250969 -193273609 - MIR SINE MIR 0 262 8 22 0 0 0 chr3 34252025 34252047 -193272531 + AT_rich Low_complexity Low_complexity 1 22 0 266 250 79 0 chr3 34252988 34253064 -193271514 - MIR3 SINE MIR -11 197 116 207 0 0 0 chr3 34253720 34253743 -193270835 + (A)n Simple_repeat Simple_repeat 1 23 0 339 259 95 26 chr3 34255050 34255166 -193269412 - MIR SINE MIR -76 186 63 200 342 76 0 chr3 34255262 34255341 -193269237 - MIR SINE MIR -63 145 61 893 316 49 36 chr3 34255552 34256002 -193268576 + LTR16C LTR ERVL 36 491 0 258 383 7 21 chr3 34256020 34256161 -193268417 + MER5B DNA MER1_type 1 139 -39 198 0 0 0 chr3 34256270 34256292 -193268286 + (A)n Simple_repeat Simple_repeat 1 22 0 374 266 89 48 chr3 34256867 34256991 -193267587 - MIR SINE MIR -64 144 16 1548 175 45 29 chr3 34257237 34257615 -193266963 + MLT1B LTR MaLR 7 390 0 384 312 51 51 chr3 34258998 34259251 -193265327 - L2 LINE L2 -561 2753 2501 237 108 0 0 chr3 34259251 34259288 -193265290 + (TCTA)n Simple_repeat Simple_repeat 3 39 0 784 302 9 5 chr3 34260044 34260266 -193264312 - MIR SINE MIR -9 253 31 216 240 0 40 chr3 34260442 34260492 -193264086 - MIR SINE MIR -129 79 32 421 311 50 6 chr3 34262374 34262547 -193262031 + MIR SINE MIR 35 214 -48 1052 249 0 17 chr3 34262556 34262797 -193261781 + LTR53 LTR ERVL 269 505 -14 246 354 0 0 chr3 34263404 34263486 -193261092 + L2 LINE L2 3227 3308 -5 216 261 0 0 chr3 34264575 34264621 -193259957 + (CA)n Simple_repeat Simple_repeat 2 47 0 735 211 60 6 chr3 34266172 34266338 -193258240 + MER5B DNA MER1_type 1 175 -3 1984 146 0 0 chr3 34266375 34266656 -193257922 + AluSx SINE Alu 1 281 -31 15219 33 0 0 chr3 34267178 34269127 -193255451 - L1P LINE L1 -2532 3614 1666 7829 17 0 0 chr3 34269127 34270673 -193253905 + L1PA3 LINE L1 4609 6155 0 231 226 0 0 chr3 34271084 34271137 -193253441 + A-rich Low_complexity Low_complexity 1 53 0 314 280 0 0 chr3 34272967 34273042 -193251536 + L2 LINE L2 3229 3303 -10 205 122 24 24 chr3 34273730 34273771 -193250807 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 222 259 35 0 chr3 34275875 34275933 -193248645 + L2 LINE L2 3253 3312 -1 2479 199 33 7 chr3 34276688 34277260 -193247318 - L1MB7 LINE L1 -13 6171 5585 925 224 24 0 chr3 34278695 34278900 -193245678 + MER2 DNA MER2_type 1 210 -135 31 0 0 0 chr3 34278925 34278956 -193245622 + AT_rich Low_complexity Low_complexity 1 31 0 269 250 208 0 chr3 34279369 34279489 -193245089 + LTR67 LTR ERVL 405 549 -8 1904 150 7 10 chr3 34280221 34280521 -193244057 - AluSx SINE Alu -12 300 2 1913 200 73 43 chr3 34280726 34281216 -193243362 + MLT1D LTR MaLR 1 505 0 1063 273 50 14 chr3 34281244 34281603 -193242975 + MLT1J2 LTR MaLR 56 427 -23 201 299 196 10 chr3 34281610 34281707 -193242871 - L2 LINE L2 -2 3311 3197 462 296 110 38 chr3 34281890 34282235 -193242343 - MLT1J1 LTR MaLR -11 435 66 348 262 78 14 chr3 34282331 34282472 -193242106 - MIR SINE MIR -60 202 53 222 37 0 0 chr3 34282542 34282569 -193242009 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1452 140 183 19 chr3 34283310 34283632 -193240946 - THE1C LTR MaLR 0 375 1 234 62 0 0 chr3 34283634 34283666 -193240912 + (ATG)n Simple_repeat Simple_repeat 3 34 0 11655 42 4 1 chr3 34284257 34285774 -193238804 - L1PA5 LINE L1 -865 5281 3760 7283 37 0 0 chr3 34285774 34286668 -193237910 + L1PA5 LINE L1 5269 6163 0 1597 182 62 55 chr3 34286910 34286936 -193237642 - MLT2D LTR ERVL -7 407 383 495 0 0 0 chr3 34286936 34286991 -193237587 + (TG)n Simple_repeat Simple_repeat 2 56 0 1597 182 62 55 chr3 34286991 34287241 -193237337 - MLT2D LTR ERVL -31 383 125 2287 171 45 0 chr3 34287241 34287645 -193236933 - MSTB LTR MaLR 0 426 5 1597 182 62 55 chr3 34287645 34287768 -193236810 - MLT2D LTR ERVL -289 125 4 276 204 0 0 chr3 34287903 34287957 -193236621 - MER69 DNA AcHobo -11 2515 2462 1724 244 60 15 chr3 34287986 34288589 -193235989 + L1ME2 LINE L1 5526 6155 -9 741 228 45 65 chr3 34288603 34288985 -193235593 - MER69 DNA AcHobo -71 2455 2082 310 206 38 175 chr3 34289513 34289673 -193234905 + MIR SINE MIR 118 255 -7 218 281 70 47 chr3 34289698 34289826 -193234752 + L2 LINE L2 2232 2362 -952 1307 192 13 7 chr3 34289950 34290257 -193234321 - MER33 DNA MER1_type -22 302 1 246 311 46 60 chr3 34290880 34291031 -193233547 + L2 LINE L2 3164 3312 -1 776 271 64 27 chr3 34291557 34291852 -193232726 - MLT2F LTR ERVL -344 319 14 402 281 116 0 chr3 34291876 34292022 -193232556 - MLT1K LTR MaLR 0 588 426 3412 177 10 94 chr3 34292026 34292652 -193231926 + L1MA9 LINE L1 5163 5739 -573 500 92 0 13 chr3 34292652 34292728 -193231850 + MADE1 DNA Mariner 1 75 -5 3412 177 10 94 chr3 34292728 34293113 -193231465 + L1MA9 LINE L1 5739 6155 -157 362 329 7 26 chr3 34293119 34293274 -193231304 - MLT1K LTR MaLR -153 435 284 1054 216 113 21 chr3 34293322 34293605 -193230973 - MLT1D LTR MaLR 0 505 197 1168 234 65 60 chr3 34293687 34293845 -193230733 + MLT2B1 LTR ERVL 105 261 -259 306 73 0 0 chr3 34293845 34293886 -193230692 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1168 234 65 60 chr3 34293886 34294093 -193230485 + MLT2B1 LTR ERVL 261 475 -45 375 23 0 0 chr3 34294093 34294137 -193230441 + (TG)n Simple_repeat Simple_repeat 1 44 0 1168 234 65 60 chr3 34294137 34294184 -193230394 + MLT2B1 LTR ERVL 475 520 0 1020 161 65 15 chr3 34294184 34294383 -193230195 - MLT1D LTR MaLR -296 209 1 243 337 0 0 chr3 34294386 34294478 -193230100 - MLT1K LTR MaLR -342 246 155 315 350 47 33 chr3 34294674 34294888 -193229690 + MIR SINE MIR 34 250 -12 235 309 164 24 chr3 34295862 34296027 -193228551 + MIR3 SINE MIR 14 201 -7 209 357 119 53 chr3 34296055 34296299 -193228279 + L2 LINE L2 2997 3256 -16 516 286 196 0 chr3 34296601 34296790 -193227788 + MIR SINE MIR 13 238 -24 69 48 0 0 chr3 34296813 34296917 -193227661 + AT_rich Low_complexity Low_complexity 1 104 0 469 323 47 25 chr3 34297119 34297234 -193227344 + MIR SINE MIR 23 134 -128 12582 33 3 0 chr3 34297234 34299511 -193225067 + L1PA4 LINE L1 3869 6148 -7 469 323 47 25 chr3 34299511 34299630 -193224948 + MIR SINE MIR 134 262 0 190 336 123 16 chr3 34300442 34300564 -193224014 - MIR SINE MIR -56 152 18 400 244 177 55 chr3 34300982 34301146 -193223432 - MER5A DNA MER1_type -5 184 1 222 304 29 0 chr3 34301434 34301503 -193223075 + L2 LINE L2 2725 2795 -519 476 275 211 31 chr3 34301504 34301864 -193222714 - MLT1J1 LTR MaLR -2 444 20 452 348 50 0 chr3 34302182 34302323 -193222255 + L2 LINE L2 3121 3268 -4 1085 112 5 0 chr3 34302323 34302527 -193222051 + (GGAA)n Simple_repeat Simple_repeat 1 204 0 602 178 5 38 chr3 34302528 34302713 -193221865 + GA-rich Low_complexity Low_complexity 2 180 0 436 226 155 77 chr3 34302950 34303118 -193221460 - MER5A DNA MER1_type 0 189 9 317 354 90 0 chr3 34304524 34304668 -193219910 - MIR SINE MIR -79 183 27 553 203 83 8 chr3 34306598 34306731 -193217847 - MER3 DNA MER1_type -66 143 1 649 332 13 8 chr3 34307628 34307863 -193216715 - MIR SINE MIR -2 260 25 1176 208 118 12 chr3 34308547 34308802 -193215776 + AluJo SINE Alu 7 288 -24 2306 64 4 0 chr3 34308812 34309134 -193215444 + AluY SINE Alu 1 323 0 369 0 0 0 chr3 34309382 34309423 -193215155 + (CA)n Simple_repeat Simple_repeat 1 41 0 198 273 5 41 chr3 34309589 34309689 -193214889 + MIR SINE MIR 49 141 -67 2146 117 0 7 chr3 34310827 34311136 -193213442 + AluY SINE Alu 1 307 -4 1004 88 61 0 chr3 34311136 34311283 -193213295 + AluSg/x SINE Alu 132 287 -23 2086 116 0 0 chr3 34311285 34311598 -193212980 + AluSq SINE Alu 1 313 0 245 356 0 0 chr3 34312061 34312165 -193212413 + A-rich Low_complexity Low_complexity 2 105 0 876 227 92 21 chr3 34313093 34313419 -193211159 + L1ME2 LINE L1 5807 6155 -9 216 67 0 0 chr3 34313436 34313466 -193211112 + (CA)n Simple_repeat Simple_repeat 2 31 0 1744 263 21 23 chr3 34313490 34314107 -193210471 + L1ME3A LINE L1 5527 6142 -28 317 256 120 15 chr3 34314839 34314972 -193209606 - MLT1J LTR MaLR -46 465 319 5121 136 28 0 chr3 34315278 34316222 -193208356 + L1PB4 LINE L1 5169 6137 -19 23 54 0 0 chr3 34316393 34316430 -193208148 + AT_rich Low_complexity Low_complexity 1 37 0 6108 133 61 34 chr3 34316558 34318241 -193206337 - L1MA1 LINE L1 -1 7720 5971 2258 121 0 0 chr3 34318241 34318546 -193206032 + AluSx SINE Alu 1 305 -7 6108 133 61 34 chr3 34318546 34319003 -193205575 - L1MA1 LINE L1 -1750 5971 5528 6673 198 27 15 chr3 34319003 34319610 -193204968 - L1MA1 LINE L1 -2271 5294 4696 2131 116 7 20 chr3 34319610 34319911 -193204667 - AluSg SINE Alu -13 297 1 6673 198 27 15 chr3 34319911 34319947 -193204631 - L1MA1 LINE L1 -2869 4696 4662 2479 80 0 0 chr3 34319947 34320258 -193204320 - AluY SINE Alu 0 311 1 6673 198 27 15 chr3 34320258 34321772 -193202806 - L1MA1 LINE L1 -2903 4662 3110 40160 40 21 2 chr3 34321772 34327804 -193196774 + L1PA3 LINE L1 1 6152 -3 15804 166 49 10 chr3 34327831 34330828 -193193750 - L1MA1 LINE L1 -4438 3127 16 369 309 52 0 chr3 34333338 34333474 -193191104 - L2 LINE L2 0 3313 3171 962 98 33 20 chr3 34333599 34333752 -193190826 - L1PA15 LINE L1 0 6165 6011 1039 255 28 0 chr3 34333771 34334026 -193190552 - L2 LINE L2 -774 2540 2279 209 140 200 0 chr3 34334111 34334161 -193190417 - MIR SINE MIR -110 152 93 925 258 28 9 chr3 34334165 34334382 -193190196 + MER58A DNA MER1_type 1 221 -3 233 330 11 11 chr3 34334390 34334478 -193190100 - MIR SINE MIR -172 90 3 21 36 0 0 chr3 34334509 34334537 -193190041 + AT_rich Low_complexity Low_complexity 1 28 0 214 240 0 130 chr3 34335209 34335309 -193189269 + MIR SINE MIR 168 254 -8 1767 187 82 6 chr3 34336789 34337132 -193187446 + MLT1D LTR MaLR 22 390 -115 1018 254 36 54 chr3 34337154 34337591 -193186987 + MLT1-int LTR MaLR 962 1714 -21 339 25 0 0 chr3 34337825 34337865 -193186713 + (TG)n Simple_repeat Simple_repeat 1 40 0 474 350 91 25 chr3 34339156 34339519 -193185059 + L2 LINE L2 2205 2591 -723 208 315 0 0 chr3 34339678 34339751 -193184827 + (TA)n Simple_repeat Simple_repeat 1 73 0 579 354 16 24 chr3 34339982 34340236 -193184342 - MIR SINE MIR -8 254 3 370 316 0 0 chr3 34340287 34340385 -193184193 - L2 LINE L2 -24 3289 3192 310 337 85 30 chr3 34340392 34340662 -193183916 - L1MC/D LINE L1 -2007 5801 5517 970 266 106 66 chr3 34340820 34342339 -193182239 + L1ME3A LINE L1 2738 4196 -1974 7302 40 8 0 chr3 34342339 34343269 -193181309 + L1PA4 LINE L1 5218 6154 -1 970 266 106 66 chr3 34343269 34344078 -193180500 + L1ME3A LINE L1 4196 6099 -71 824 197 10 42 chr3 34347126 34347319 -193177259 - L1MD2 LINE L1 -474 5885 5699 236 296 11 45 chr3 34347596 34347684 -193176894 + L2 LINE L2 3229 3313 0 400 274 15 37 chr3 34347945 34348080 -193176498 - LTR45 LTR ERV1 -2 523 392 27004 81 5 4 chr3 34348833 34352593 -193171985 - L1P LINE L1 -734 5420 1658 5702 49 3 6 chr3 34352593 34353301 -193171277 + L1PA6 LINE L1 5443 6148 -6 301 337 38 51 chr3 34353339 34353787 -193170791 + L1ME3 LINE L1 23 464 -5959 556 293 78 33 chr3 34354107 34355122 -193169456 + L1ME3 LINE L1 1156 2392 -4549 1722 222 79 54 chr3 34355122 34356329 -193168249 + L1ME3 LINE L1 5488 6726 -233 385 257 0 99 chr3 34356360 34356512 -193168066 + L1ME3 LINE L1 6814 6950 -7 1211 229 37 65 chr3 34356535 34356936 -193167642 - MLT1B LTR MaLR 0 390 1 5699 119 0 0 chr3 34358371 34359375 -193165203 - L1PB2 LINE L1 0 6151 5147 322 59 98 0 chr3 34359375 34359426 -193165152 + MADE1 DNA Mariner 1 56 -24 313 267 0 0 chr3 34359438 34359524 -193165054 - L1PB2 LINE L1 -999 5147 5062 3930 147 36 28 chr3 34359542 34360947 -193163631 + LTR28-int LTR ERV1 632 4818 -399 2351 124 10 10 chr3 34360929 34361316 -193163262 + LTR28-int LTR ERV1 4163 4549 -2988 * 11158 124 13 17 chr3 34361313 34361694 -193162884 + LTR28-int LTR ERV1 2250 2631 -2586 3539 88 47 4 chr3 34361694 34362184 -193162394 - MER9 LTR ERVK 0 511 1 11158 124 13 17 chr3 34362184 34363691 -193160887 + LTR28-int LTR ERV1 2631 5058 -159 2436 169 30 82 chr3 34363715 34364436 -193160142 + LTR28 LTR ERV1 2 636 0 345 326 103 34 chr3 34364447 34364680 -193159898 - HAL1 LINE L1 -1841 666 418 21 71 0 0 chr3 34364707 34364749 -193159829 + AT_rich Low_complexity Low_complexity 1 42 0 401 173 387 40 chr3 34364804 34364977 -193159601 - AluJo SINE Alu -109 193 72 347 323 75 0 chr3 34365030 34365231 -193159347 - HAL1 LINE L1 -2282 225 10 10222 220 55 11 chr3 34365468 34369038 -193155540 + L1PA13 LINE L1 1 3739 -3058 21 0 0 0 chr3 34369307 34369328 -193155250 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chr3 34370300 34370328 -193154250 + (GA)n Simple_repeat Simple_repeat 2 29 0 23 68 0 0 chr3 34370430 34370474 -193154104 + AT_rich Low_complexity Low_complexity 1 44 0 27 0 0 0 chr3 34370958 34370985 -193153593 + AT_rich Low_complexity Low_complexity 1 27 0 354 295 90 18 chr3 34371126 34371292 -193153286 + L2 LINE L2 2709 2886 -428 1317 247 121 50 chr3 34371294 34371848 -193152730 + MLT1E LTR MaLR 1 593 0 626 124 53 9 chr3 34371916 34372029 -193152549 - L1PA11 LINE L1 -2 6172 6055 243 307 43 36 chr3 34372044 34372184 -193152394 + L2 LINE L2 3008 3148 -165 237 203 17 0 chr3 34372214 34372273 -193152305 - HAL1 LINE L1 -4 2503 2444 2383 116 11 8 chr3 34372619 34372990 -193151588 + L1PB1 LINE L1 5780 6151 0 2556 48 3 10 chr3 34373026 34373339 -193151239 + AluY SINE Alu 1 311 0 361 337 60 18 chr3 34374793 34374959 -193149619 - MIR3 SINE MIR -6 202 30 434 337 161 20 chr3 34375238 34375724 -193148854 - L2 LINE L2 -106 3207 2654 431 303 62 15 chr3 34376264 34376459 -193148119 - MIR SINE MIR -31 231 28 204 97 0 0 chr3 34377741 34377772 -193146806 + (TAGA)n Simple_repeat Simple_repeat 3 33 0 206 300 100 33 chr3 34378315 34378435 -193146143 - MIR SINE MIR -34 228 101 329 299 198 38 chr3 34378664 34378821 -193145757 - MIR SINE MIR -49 213 32 241 227 187 13 chr3 34378935 34379010 -193145568 - MIR SINE MIR -100 162 75 251 229 72 6 chr3 34380060 34380226 -193144352 + (TA)n Simple_repeat Simple_repeat 2 178 0 205 295 137 32 chr3 34380368 34380463 -193144115 - MIR SINE MIR -123 139 35 2672 79 3 0 chr3 34380517 34380872 -193143706 - L1PA7 LINE L1 -3 6151 5796 2369 151 63 14 chr3 34381477 34381921 -193142657 + L1PB4 LINE L1 5679 6144 -12 261 340 11 75 chr3 34381930 34382021 -193142557 - MIR SINE MIR -38 224 129 2884 10 0 0 chr3 34382021 34382335 -193142243 - AluYb8 SINE Alu -4 314 1 261 340 11 75 chr3 34382335 34382468 -193142110 - MIR SINE MIR -133 129 17 315 0 0 0 chr3 34382468 34382503 -193142075 + (CA)n Simple_repeat Simple_repeat 1 35 0 461 257 28 0 chr3 34382549 34382658 -193141920 + MER5B DNA MER1_type 66 177 -1 180 0 0 0 chr3 34382668 34382688 -193141890 + (CAT)n Simple_repeat Simple_repeat 2 21 0 902 253 181 39 chr3 34383973 34384381 -193140197 - L2 LINE L2 0 3313 2848 23 0 0 0 chr3 34384430 34384453 -193140125 + AT_rich Low_complexity Low_complexity 1 23 0 1421 87 20 15 chr3 34384453 34384648 -193139930 + AluY SINE Alu 106 301 -10 296 346 27 53 chr3 34385340 34385528 -193139050 + MIR SINE MIR 37 219 -43 951 288 93 68 chr3 34385694 34386451 -193138127 + L2 LINE L2 2507 3304 -9 2156 115 6 10 chr3 34386735 34387048 -193137530 + AluSx SINE Alu 1 312 0 2760 273 65 38 chr3 34387536 34389073 -193135505 - L1MEc LINE L1 -4306 2090 512 1391 279 77 19 chr3 34389114 34389644 -193134934 - L1MEc LINE L1 -5754 642 82 2448 57 14 0 chr3 34389895 34390192 -193134386 + AluY SINE Alu 1 301 -10 548 284 103 81 chr3 34390766 34391311 -193133267 + L1ME4a LINE L1 5561 6117 -4 382 246 26 0 chr3 34391626 34391740 -193132838 + MER96B DNA MER1_type? 300 416 -1 1903 135 35 7 chr3 34391906 34392188 -193132390 - AluSx SINE Alu -22 290 1 288 238 191 8 chr3 34393193 34393319 -193131259 - L1ME3A LINE L1 -7 6163 6015 1759 188 18 36 chr3 34393339 34393389 -193131189 + MLT2C1 LTR ERVL 21 70 -327 1889 166 3 0 chr3 34393389 34393685 -193130893 + AluSx SINE Alu 1 297 -15 1759 188 18 36 chr3 34393685 34393975 -193130603 + MLT2C1 LTR ERVL 70 356 -41 378 61 0 0 chr3 34393975 34394024 -193130554 + (TG)n Simple_repeat Simple_repeat 2 50 0 1759 188 18 36 chr3 34394024 34394066 -193130512 + MLT2C1 LTR ERVL 356 397 0 368 264 101 34 chr3 34394174 34394352 -193130226 - MIR SINE MIR -4 258 69 181 345 0 0 chr3 34394716 34394774 -193129804 - MIR3 SINE MIR -3 205 148 204 308 117 42 chr3 34394832 34394952 -193129626 - MIR SINE MIR -24 238 110 22 35 0 0 chr3 34395927 34395956 -193128622 + AT_rich Low_complexity Low_complexity 1 29 0 185 368 28 9 chr3 34396124 34396230 -193128348 + MIR3 SINE MIR 15 122 -86 240 277 134 8 chr3 34396341 34396460 -193128118 - MIR SINE MIR -30 232 99 203 263 92 13 chr3 34400275 34400351 -193124227 - MIR SINE MIR -93 169 88 290 304 246 0 chr3 34402030 34402323 -193122255 - LTR33A LTR ERVL -28 495 131 1636 132 18 58 chr3 34403150 34403528 -193121050 + MER67C LTR ERV1 1 388 -243 214 243 14 40 chr3 34403552 34403626 -193120952 + L2 LINE L2 235 306 -3008 296 171 79 13 chr3 34403634 34403710 -193120868 + MER67D LTR ERV1 434 514 0 973 283 56 19 chr3 34404114 34404524 -193120054 + LTR16A LTR ERVL 26 450 0 256 262 143 62 chr3 34404605 34404815 -193119763 - MIR SINE MIR 0 262 36 230 346 69 31 chr3 34405409 34405539 -193119039 - L2 LINE L2 0 3272 3138 697 219 6 0 chr3 34405609 34405778 -193118800 - L1 LINE L1 -877 5269 5100 196 309 87 47 chr3 34405822 34405971 -193118607 - L2 LINE L2 -228 3044 2890 404 268 10 0 chr3 34406077 34406174 -193118404 - L2 LINE L2 0 3272 3175 604 225 59 6 chr3 34406239 34406408 -193118170 + MER5B DNA MER1_type 1 178 0 744 213 8 0 chr3 34406416 34406543 -193118035 - MER5A DNA MER1_type 0 189 62 4602 160 20 12 chr3 34406543 34407677 -193116901 - L1PB4 LINE L1 -1 6155 5006 1227 205 81 0 chr3 34407677 34407975 -193116603 + L1PB4 LINE L1 4667 4988 -1158 331 261 0 0 chr3 34407976 34408045 -193116533 - MER5A DNA MER1_type -116 73 5 440 263 254 29 chr3 34408319 34408524 -193116054 + MIR SINE MIR 9 259 -3 21 82 0 0 chr3 34409539 34409588 -193114990 + AT_rich Low_complexity Low_complexity 1 49 0 442 239 194 39 chr3 34409794 34409974 -193114604 - MIR SINE MIR -8 254 47 3997 191 52 5 chr3 34409980 34411088 -193113490 - L1MB8 LINE L1 0 6178 5021 11475 103 82 7 chr3 34411101 34411352 -193113226 - L1MA1 LINE L1 -40 6272 6041 666 97 0 26 chr3 34411352 34411466 -193113112 - L1MA1 LINE L1 0 6302 6192 11475 103 82 7 chr3 34411466 34414115 -193110463 - L1MA1 LINE L1 -271 6041 3161 7522 28 2 0 chr3 34414115 34415705 -193108873 + L1PA4 LINE L1 4557 6148 -7 314 322 0 9 chr3 34415709 34415824 -193108754 + MIR SINE MIR 149 262 0 190 336 123 16 chr3 34416636 34416758 -193107820 - MIR SINE MIR -56 152 18 381 250 177 55 chr3 34417176 34417340 -193107238 - MER5A DNA MER1_type -5 184 1 222 304 29 0 chr3 34417628 34417697 -193106881 + L2 LINE L2 2725 2795 -519 476 275 211 31 chr3 34417698 34418058 -193106520 - MLT1J1 LTR MaLR -2 444 20 452 348 50 0 chr3 34418376 34418517 -193106061 + L2 LINE L2 3121 3268 -4 1085 112 5 0 chr3 34418517 34418721 -193105857 + (GGAA)n Simple_repeat Simple_repeat 1 204 0 591 183 11 33 chr3 34418722 34418902 -193105676 + GA-rich Low_complexity Low_complexity 2 177 0 227 79 26 0 chr3 34418902 34418940 -193105638 + (GGAA)n Simple_repeat Simple_repeat 3 41 0 436 226 155 77 chr3 34419145 34419313 -193105265 - MER5A DNA MER1_type 0 189 9 317 354 90 0 chr3 34420721 34420865 -193103713 - MIR SINE MIR -79 183 27 240 289 21 41 chr3 34422505 34422602 -193101976 - L2 LINE L2 -243 3029 2935 192 40 0 0 chr3 34422894 34422919 -193101659 + (TTG)n Simple_repeat Simple_repeat 2 26 0 225 378 25 25 chr3 34423598 34423717 -193100861 - L2 LINE L2 0 3272 3154 252 315 8 69 chr3 34423933 34424063 -193100515 - MIR3 SINE MIR -4 204 83 1538 209 73 104 chr3 34424205 34424428 -193100150 + MLT1F1 LTR MaLR 5 233 -334 297 0 0 0 chr3 34424428 34424461 -193100117 + (CA)n Simple_repeat Simple_repeat 1 33 0 1538 209 73 104 chr3 34424461 34424729 -193099849 + MLT1F1 LTR MaLR 233 481 -86 1890 167 0 3 chr3 34426089 34426394 -193098184 + AluJo SINE Alu 1 304 -8 1402 249 7 27 chr3 34426439 34426657 -193097921 - L1ME1 LINE L1 -5 6161 5953 1795 203 103 61 chr3 34426657 34427143 -193097435 - MLT1F1 LTR MaLR 0 567 54 1865 162 14 3 chr3 34427143 34427439 -193097139 + AluSx SINE Alu 1 299 -13 1795 203 103 61 chr3 34427439 34427495 -193097083 - MLT1F1 LTR MaLR -513 54 2 1402 249 7 27 chr3 34427495 34427689 -193096889 - L1ME1 LINE L1 -213 5953 5757 23332 122 17 64 chr3 34427755 34433635 -193090943 + L1P3 LINE L1 12 5530 -624 * 43103 46 3 3 chr3 34433604 34439749 -193084829 + L1PA3 LINE L1 7 6150 -5 183 42 0 0 chr3 34439756 34439780 -193084798 + (TAAAAA)n Simple_repeat Simple_repeat 2 25 0 4962 75 10 1 chr3 34439783 34440454 -193084124 + L1PA7 LINE L1 5476 6152 -2 29 84 0 0 chr3 34443798 34443869 -193080709 + AT_rich Low_complexity Low_complexity 1 71 0 371 330 60 14 chr3 34444111 34444329 -193080249 - L1M4 LINE L1 -2995 3151 2924 24 67 0 0 chr3 34444544 34444589 -193079989 + AT_rich Low_complexity Low_complexity 1 45 0 198 209 0 0 chr3 34444730 34444773 -193079805 + (TA)n Simple_repeat Simple_repeat 1 43 0 1165 210 102 67 chr3 34444967 34445400 -193079178 + L1M4 LINE L1 4680 5127 -1019 451 288 132 69 chr3 34445400 34445719 -193078859 + MLT1I LTR MaLR 71 409 0 21 82 0 0 chr3 34447586 34447635 -193076943 + AT_rich Low_complexity Low_complexity 1 49 0 447 239 194 39 chr3 34447841 34448021 -193076557 - MIR SINE MIR -8 254 47 4216 190 54 5 chr3 34448027 34449134 -193075444 - L1MB8 LINE L1 0 6178 5021 12140 99 77 7 chr3 34449147 34449398 -193075180 - L1MA1 LINE L1 -27 6277 6045 672 97 0 26 chr3 34449398 34449512 -193075066 - L1MA1 LINE L1 0 6302 6192 12140 99 77 7 chr3 34449512 34452161 -193072417 - L1MA1 LINE L1 -259 6045 3161 7244 34 7 7 chr3 34452161 34453760 -193070818 + L1PA4 LINE L1 4557 6155 0 8721 195 18 12 chr3 34453779 34456764 -193067814 + L1PA16 LINE L1 3165 6166 0 299 266 18 18 chr3 34457314 34457423 -193067155 - Charlie8 DNA MER1_type -1930 487 379 392 327 84 5 chr3 34457745 34457947 -193066631 + Charlie8 DNA MER1_type 1 218 -2199 192 330 120 65 chr3 34457982 34458182 -193066396 + L2 LINE L2 3062 3272 0 257 277 0 0 chr3 34458216 34458281 -193066297 - L2 LINE L2 -7 3265 3201 462 180 0 0 chr3 34458733 34458822 -193065756 + L1MA10 LINE L1 6232 6320 -14 2633 192 20 14 chr3 34458831 34459325 -193065253 - MLT2B1 LTR ERVL -23 497 1 239 360 0 0 chr3 34459352 34459441 -193065137 - MIR SINE MIR -6 256 168 258 105 0 0 chr3 34459540 34459578 -193065000 + (GGGA)n Simple_repeat Simple_repeat 1 38 0 21 0 0 0 chr3 34460543 34460564 -193064014 + AT_rich Low_complexity Low_complexity 1 21 0 344 290 92 23 chr3 34462810 34462941 -193061637 - MIR SINE MIR -21 241 102 3498 151 7 4 chr3 34463707 34464613 -193059965 + L1MC1 LINE L1 5381 6332 -1 530 271 129 44 chr3 34465841 34466136 -193058442 + MER5C DNA MER1_type 4 323 -1 350 309 26 78 chr3 34468287 34468478 -193056100 + MIR SINE MIR 50 230 -32 18615 38 2 5 chr3 34469472 34472548 -193052030 - L1PA3 LINE L1 -13 6142 3078 280 0 24 24 chr3 34473666 34473707 -193050871 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 180 178 22 22 chr3 34473733 34473778 -193050800 + MIR SINE MIR 97 141 -67 2080 162 71 2 chr3 34474630 34475026 -193049552 + MER95 LTR ERV 9 431 0 623 154 0 18 chr3 34475577 34475687 -193048891 - L1PB4 LINE L1 0 6156 6049 602 295 136 45 chr3 34475723 34476108 -193048470 - HAL1 LINE L1 -700 1807 1458 2107 119 57 23 chr3 34476108 34476460 -193048118 - THE1B LTR MaLR 0 364 1 602 295 136 45 chr3 34476460 34476620 -193047958 - HAL1 LINE L1 -1049 1458 1314 1113 166 57 81 chr3 34476620 34476952 -193047626 - MER33 DNA MER1_type 0 324 1 602 295 136 45 chr3 34476952 34477331 -193047247 - HAL1 LINE L1 -1193 1314 798 671 241 75 10 chr3 34477689 34477888 -193046690 - LTR16A1 LTR ERVL -13 444 233 267 258 82 10 chr3 34477872 34477969 -193046609 - LTR16A1 LTR ERVL -352 105 2 * 290 250 109 0 chr3 34477969 34478061 -193046517 - HAL1 LINE L1 -2398 109 8 336 312 116 21 chr3 34478601 34478790 -193045788 - MIR SINE MIR -36 226 20 1641 125 106 4 chr3 34479735 34479999 -193044579 - AluSx SINE Alu -21 291 1 1943 47 0 0 chr3 34480216 34480472 -193044106 - L1P LINE L1 -2683 3463 3208 5003 35 7 3 chr3 34480472 34481070 -193043508 + L1PA5 LINE L1 5548 6153 -1 1450 211 110 15 chr3 34481093 34481492 -193043086 + MER110 LTR ERV1 1 437 -54 462 353 49 0 chr3 34481533 34481737 -193042841 - MIR SINE MIR -17 245 32 341 292 99 35 chr3 34482165 34483139 -193041439 - L1ME LINE L1 -4639 1622 533 315 0 0 0 chr3 34483495 34483530 -193041048 + (A)n Simple_repeat Simple_repeat 1 35 0 31 0 0 0 chr3 34483621 34483652 -193040926 + AT_rich Low_complexity Low_complexity 1 31 0 2254 107 0 0 chr3 34485058 34485356 -193039222 - AluSx SINE Alu -13 299 2 912 223 122 14 chr3 34485476 34485763 -193038815 - L1ME3A LINE L1 -9 6161 5844 280 244 52 37 chr3 34485795 34485930 -193038648 + MER113 DNA MER1_type? 1 137 -384 25 65 0 0 chr3 34485968 34486014 -193038564 + AT_rich Low_complexity Low_complexity 1 46 0 210 299 30 0 chr3 34486732 34486799 -193037779 + MIR SINE MIR 72 140 -68 1757 284 95 36 chr3 34487222 34488692 -193035886 + L1ME1 LINE L1 320 1853 -4227 7510 34 0 0 chr3 34488692 34490048 -193034530 + L1PA4 LINE L1 4781 6153 -2 1757 284 95 36 chr3 34490048 34490405 -193034173 + L1ME1 LINE L1 1853 2188 -3892 2337 254 135 17 chr3 34490712 34491928 -193032650 + L1ME1 LINE L1 2278 3636 -2444 2037 258 58 27 chr3 34492032 34492706 -193031872 + L1ME1 LINE L1 5405 6099 -1 275 310 0 0 chr3 34493026 34493126 -193031452 + L1ME LINE L1 3265 3364 -2716 851 272 25 11 chr3 34493278 34493557 -193031021 + L1ME LINE L1 3595 3877 -2203 318 344 27 36 chr3 34494014 34494235 -193030343 + L1ME LINE L1 5389 5607 -448 28216 132 21 51 chr3 34494322 34495799 -193028779 + L1PA8 LINE L1 2 1522 -4650 2119 139 0 0 chr3 34495799 34496101 -193028477 + AluSc SINE Alu 1 302 -7 28216 132 21 51 chr3 34496101 34501001 -193023577 + L1PA8 LINE L1 1522 6170 -2 626 122 9 0 chr3 34501013 34501120 -193023458 + (GGAA)n Simple_repeat Simple_repeat 2 109 0 234 250 0 26 chr3 34501274 34501350 -193023228 + L1ME LINE L1 5757 5830 -225 1452 242 45 45 chr3 34501371 34501876 -193022702 + MLT1D LTR MaLR 1 505 0 239 219 0 0 chr3 34501899 34501940 -193022638 - MER8 DNA MER2_type 0 239 199 2521 159 58 4 chr3 34501940 34502392 -193022186 - MER66A LTR ERV1 0 478 3 13790 136 7 18 chr3 34502396 34504535 -193020043 - MER66A-int LTR ERV1 -6 6670 4557 346 193 59 160 chr3 34504535 34504654 -193019924 - MER4D LTR ERV1 -744 159 53 2789 172 45 41 chr3 34504654 34505633 -193018945 - MER66A-int LTR ERV1 -2224 4452 3149 463 146 0 0 chr3 34505634 34505716 -193018862 - MER66-int LTR ERV1 -3226 3450 3369 3716 67 2 6 chr3 34505716 34506206 -193018372 - L1PA6 LINE L1 -1 6153 5666 36636 91 10 17 chr3 34507230 34513416 -193011162 - L1PA3 LINE L1 -3 6152 11 4571 207 53 48 chr3 34513604 34514630 -193009948 - MER66-int LTR ERV1 -3310 3366 2336 2655 198 54 1 chr3 34514626 34515162 -193009416 - MER66-int LTR ERV1 -4515 2161 1562 * 1080 193 20 71 chr3 34515182 34515436 -193009142 - MER66A LTR ERV1 -237 241 1 1997 182 20 10 chr3 34515438 34515828 -193008750 + Tigger2a DNA MER2_type 41 434 0 25 65 0 0 chr3 34515900 34515946 -193008632 + AT_rich Low_complexity Low_complexity 1 46 0 26 0 0 0 chr3 34515989 34516015 -193008563 + AT_rich Low_complexity Low_complexity 1 26 0 3039 136 131 25 chr3 34516592 34517157 -193007421 + MER51A LTR ERV1 1 625 -9 747 219 0 83 chr3 34517573 34517778 -193006800 + MER5A DNA MER1_type 1 188 -1 874 225 48 0 chr3 34518160 34518347 -193006231 - MIR SINE MIR -66 196 1 388 295 109 36 chr3 34519516 34519709 -193004869 + MLT1J2 LTR MaLR 240 446 -4 1948 110 0 57 chr3 34519801 34520100 -193004478 + AluY SINE Alu 1 282 -29 808 19 37 0 chr3 34520105 34520213 -193004365 + (GAAA)n Simple_repeat Simple_repeat 3 114 0 3399 209 70 50 chr3 34520536 34521806 -193002772 - L1ME2 LINE L1 -10 6154 4855 662 243 21 16 chr3 34522692 34522881 -193001697 + L1MC5 LINE L1 7048 7237 -724 24 0 0 0 chr3 34523032 34523056 -193001522 + AT_rich Low_complexity Low_complexity 1 24 0 1220 228 36 65 chr3 34523060 34523673 -193000905 + L1MC5 LINE L1 7316 7910 -51 333 278 42 7 chr3 34524793 34524937 -192999641 + MER103 DNA DNA 11 159 -7 259 317 12 0 chr3 34524985 34525067 -192999511 - MIR3 SINE MIR -49 159 77 320 279 66 22 chr3 34526380 34526516 -192998062 + MER91A DNA MER1_type 1 142 -54 2324 212 16 18 chr3 34526973 34527474 -192997104 - MLT1D LTR MaLR -5 500 1 305 254 46 101 chr3 34527682 34527899 -192996679 - L1MC4 LINE L1 -9 8033 7829 426 215 99 84 chr3 34527943 34528134 -192996444 - L1ME2 LINE L1 -20 6144 5951 305 321 147 9 chr3 34528558 34528776 -192995802 + MIR SINE MIR 13 260 -2 448 317 44 11 chr3 34529699 34529879 -192994699 + LTR16C LTR ERVL 306 491 0 1002 306 70 25 chr3 34529887 34530386 -192994192 + L2 LINE L2 2554 3062 -251 7415 39 0 2 chr3 34530580 34531703 -192992875 + L1PA4 LINE L1 5032 6152 -3 1571 188 0 50 chr3 34531744 34532063 -192992515 + AluJo SINE Alu 1 303 -9 27 49 0 0 chr3 34532128 34532169 -192992409 + AT_rich Low_complexity Low_complexity 1 41 0 302 232 37 73 chr3 34532212 34532376 -192992202 + L1ME LINE L1 5547 5704 -417 233 333 8 77 chr3 34533027 34533144 -192991434 - MLT1J2 LTR MaLR -93 357 249 2762 188 43 37 chr3 34533404 34534028 -192990550 - MER92B LTR ERV1 -8 628 1 1903 198 61 0 chr3 34534045 34534388 -192990190 - MLT1A1 LTR MaLR -1 364 1 746 263 202 25 chr3 34534402 34534759 -192989819 + MLT1J2 LTR MaLR 1 420 -30 224 283 0 0 chr3 34534841 34534894 -192989684 + MIR SINE MIR 210 262 0 209 302 103 32 chr3 34535723 34535849 -192988729 + MIR SINE MIR 20 154 -108 317 280 59 17 chr3 34535987 34536105 -192988473 - L2 LINE L2 -2 3311 3189 1388 256 116 11 chr3 34536135 34536514 -192988064 - LTR16C LTR ERVL -2 489 71 293 324 90 7 chr3 34536827 34536972 -192987606 - MIR SINE MIR -1 261 105 268 256 103 8 chr3 34537618 34537735 -192986843 - MIR SINE MIR -16 246 119 277 204 0 0 chr3 34539209 34539258 -192985320 - MIR3 SINE MIR -11 197 149 262 354 71 0 chr3 34539908 34540021 -192984557 - MIR SINE MIR -64 144 24 213 289 59 59 chr3 34540985 34541120 -192983458 - MIR SINE MIR -18 244 110 203 234 36 108 chr3 34541173 34541284 -192983294 - L2 LINE L2 -56 3257 3155 481 290 53 30 chr3 34543042 34543211 -192981367 + MIR SINE MIR 3 175 -87 23 33 0 0 chr3 34543525 34543555 -192981023 + AT_rich Low_complexity Low_complexity 1 30 0 1456 202 46 49 chr3 34543575 34543941 -192980637 - MLT1A1 LTR MaLR 0 365 1 7747 53 0 0 chr3 34544170 34545129 -192979449 - L1PA4 LINE L1 -4099 2047 1089 * 28001 32 2 5 chr3 34545126 34549229 -192975349 + L1PA4 LINE L1 2062 6152 -3 547 263 79 41 chr3 34549534 34549879 -192974699 - LTR18B LTR ERVL 0 614 1 231 340 123 0 chr3 34549882 34550044 -192974534 + L2 LINE L2 2472 2653 -661 644 164 190 0 chr3 34550050 34550166 -192974412 - FLAM_C SINE Alu -4 139 2 2320 203 22 18 chr3 34550390 34550838 -192973740 - LTR32 LTR ERVL 0 471 22 338 218 58 23 chr3 34551081 34551168 -192973410 + MLT1J2 LTR MaLR 361 450 0 793 298 110 21 chr3 34551373 34551799 -192972779 + LTR16B LTR ERVL 1 464 0 234 295 105 0 chr3 34551832 34551927 -192972651 - MIR SINE MIR -76 186 82 227 294 101 73 chr3 34552064 34552173 -192972405 + L2 LINE L2 3123 3234 -38 297 0 0 0 chr3 34552941 34552974 -192971604 + (A)n Simple_repeat Simple_repeat 1 33 0 926 190 42 118 chr3 34553028 34553265 -192971313 + AluJo SINE Alu 61 279 -33 311 0 26 0 chr3 34553265 34553304 -192971274 + (TAAAA)n Simple_repeat Simple_repeat 1 40 0 897 239 16 5 chr3 34554057 34554241 -192970337 + MER5A DNA MER1_type 2 187 -2 4189 67 0 2 chr3 34554602 34555122 -192969456 + LTR17 LTR ERV1 262 780 0 26160 48 4 7 chr3 34555177 34557094 -192967484 + HERV17 LTR ERV1 1953 3859 -4767 2255 62 66 3 chr3 34557094 34557382 -192967196 + AluY SINE Alu 1 306 -5 26160 48 4 7 chr3 34557382 34558588 -192965990 + HERV17 LTR ERV1 3859 5067 -3559 10641 53 0 23 chr3 34558579 34559903 -192964675 + HERV17 LTR ERV1 6902 8195 -431 * 652 102 0 31 chr3 34559898 34559996 -192964582 + HERV17 LTR ERV1 8161 8255 -371 * 6605 71 18 6 chr3 34559996 34560818 -192963760 + L1PA7 LINE L1 5310 6141 -13 614 13 0 13 chr3 34560821 34560897 -192963681 + (GAAA)n Simple_repeat Simple_repeat 2 76 0 433 309 93 10 chr3 34561005 34561199 -192963379 - MIR SINE MIR -51 211 2 451 292 157 42 chr3 34561480 34561792 -192962786 + MER113 DNA MER1_type? 171 518 -3 276 241 0 0 chr3 34562820 34562874 -192961704 - MLT1H LTR MaLR 0 549 496 543 311 63 60 chr3 34562911 34563213 -192961365 - MLT1H LTR MaLR -197 352 50 357 47 0 0 chr3 34563647 34563690 -192960888 + MADE1 DNA Mariner 3 45 -35 22 35 0 0 chr3 34564121 34564150 -192960428 + AT_rich Low_complexity Low_complexity 1 29 0 2151 120 9 22 chr3 34564763 34565080 -192959498 - AluSp SINE Alu 0 313 1 667 232 89 154 chr3 34565277 34565907 -192958671 - MLT1G LTR MaLR 0 555 1 314 336 63 66 chr3 34566643 34567021 -192957557 - MLT1J LTR MaLR 0 511 135 253 330 52 17 chr3 34567167 34567282 -192957296 + MIR SINE MIR 29 147 -61 234 259 0 19 chr3 34567461 34567515 -192957063 + MLT1J LTR MaLR 110 162 -349 314 315 203 10 chr3 34567668 34567865 -192956713 + MLT1L LTR MaLR 369 603 -12 223 264 0 0 chr3 34567972 34568025 -192956553 - MER5A DNA MER1_type -80 109 57 187 300 20 0 chr3 34568090 34568140 -192956438 + MIR SINE MIR 83 133 -75 441 0 0 0 chr3 34568545 34568594 -192955984 + (TG)n Simple_repeat Simple_repeat 2 50 0 1367 105 0 0 chr3 34568624 34568795 -192955783 - AluSq SINE Alu -142 171 1 3353 99 46 0 chr3 34569739 34570172 -192954406 + MLT2A2 LTR ERVL 1 453 0 252 211 0 39 chr3 34570872 34570924 -192953654 + MIR3 SINE MIR 118 167 -41 * 548 239 101 38 chr3 34570920 34571079 -192953499 + MER5B DNA MER1_type 7 175 -3 455 236 150 50 chr3 34571251 34571391 -192953187 + MLT1E LTR MaLR 97 250 -343 896 220 37 50 chr3 34571396 34571637 -192952941 + MLT1A1 LTR MaLR 1 238 -127 207 303 158 0 chr3 34571643 34571719 -192952859 + MIR3 SINE MIR 114 201 -7 587 296 13 48 chr3 34571751 34571981 -192952597 + MIR SINE MIR 23 244 -18 1062 176 0 0 chr3 34573832 34574014 -192950564 + L1MB1 LINE L1 5986 6167 -1 25 0 0 0 chr3 34574264 34574289 -192950289 + AT_rich Low_complexity Low_complexity 1 25 0 979 241 87 61 chr3 34574289 34574398 -192950180 + L1ME4a LINE L1 5335 5440 -681 2550 63 0 0 chr3 34574398 34574700 -192949878 - AluY SINE Alu -9 302 1 979 241 87 61 chr3 34574700 34575147 -192949431 + L1ME4a LINE L1 5440 5901 -220 389 274 91 25 chr3 34575738 34575935 -192948643 - MLT1H1 LTR MaLR 0 555 346 2061 248 35 30 chr3 34576035 34576600 -192947978 - MER74B LTR ERVL 0 622 55 983 221 113 75 chr3 34576934 34577283 -192947295 - LTR16A1 LTR ERVL 0 457 90 1979 199 17 6 chr3 34577283 34577644 -192946934 - MLT1A1 LTR MaLR 0 365 1 983 221 113 75 chr3 34577644 34577683 -192946895 - LTR16A1 LTR ERVL -367 90 54 211 324 15 0 chr3 34579197 34579265 -192945313 + CT-rich Low_complexity Low_complexity 4 72 0 379 165 24 82 chr3 34579733 34579818 -192944760 + MER116 DNA Mariner 1 80 0 1143 275 70 31 chr3 34581008 34581452 -192943126 - LTR16C LTR ERVL -30 461 1 1989 175 189 16 chr3 34581948 34582377 -192942201 + MLT1D LTR MaLR 1 503 -2 886 213 12 0 chr3 34582586 34582746 -192941832 + MIR SINE MIR 4 165 -97 1740 181 153 12 chr3 34582749 34583153 -192941425 + MLT1C LTR MaLR 6 466 -1 225 273 81 30 chr3 34583154 34583253 -192941325 + MIR SINE MIR 159 262 0 992 214 14 37 chr3 34583385 34583600 -192940978 - AluJo SINE Alu -102 210 1 313 324 0 0 chr3 34583746 34583817 -192940761 + Charlie1 DNA MER1_type 1 71 -2690 1684 175 55 18 chr3 34583817 34584218 -192940360 + Charlie1 DNA MER1_type 2344 2759 -2 428 214 34 0 chr3 34585938 34586027 -192938551 + L2 LINE L2 3220 3311 -2 450 65 0 0 chr3 34586709 34586771 -192937807 + (TC)n Simple_repeat Simple_repeat 2 63 0 3164 90 44 2 chr3 34587114 34587549 -192937029 + MLT2A2 LTR ERVL 1 453 0 23 0 0 0 chr3 34588249 34588272 -192936306 + AT_rich Low_complexity Low_complexity 1 23 0 575 266 72 87 chr3 34588348 34588807 -192935771 - LTR16A1 LTR ERVL -4 453 2 2315 184 14 16 chr3 34589013 34589512 -192935066 + L1MD3 LINE L1 7498 7995 0 188 146 49 0 chr3 34589703 34589744 -192934834 + GA-rich Low_complexity Low_complexity 3 45 0 379 302 77 12 chr3 34590493 34590662 -192933916 - MIR SINE MIR -1 261 82 631 294 58 22 chr3 34590905 34591265 -192933313 + L1ME4a LINE L1 5532 5904 -217 2406 104 62 3 chr3 34591274 34591630 -192932948 - MER51B LTR ERV1 0 377 1 9281 120 66 19 chr3 34591632 34591888 -192932690 - MER51B-int LTR ERV1 -1 7815 7572 2070 110 21 10 chr3 34591888 34592179 -192932399 - AluSg1 SINE Alu -15 294 1 9281 120 66 19 chr3 34592179 34593847 -192930731 - MER51B-int LTR ERV1 -244 7572 5620 347 161 108 21 chr3 34593837 34593930 -192930648 - MER51B-int LTR ERV1 -2188 5349 5249 * 2231 88 132 3 chr3 34593929 34594315 -192930263 - MER51B-int LTR ERV1 -2572 2645 2210 1771 161 55 5 chr3 34594324 34594782 -192929796 - MER51B-int LTR ERV1 -2774 3172 1474 * 8262 100 65 0 chr3 34594767 34596190 -192928388 - MER51B-int LTR ERV1 -4501 3315 1801 596 168 71 54 chr3 34596190 34596387 -192928191 - MER4A LTR ERV1 -130 534 276 243 188 0 0 chr3 34596392 34596440 -192928138 - MER4A LTR ERV1 -566 98 51 4574 116 17 19 chr3 34596456 34597757 -192926821 - MER51B-int LTR ERV1 -6321 1495 1 2447 103 56 3 chr3 34597757 34598115 -192926463 - MER51B LTR ERV1 0 377 1 321 219 106 41 chr3 34598273 34598396 -192926182 + L1ME4a LINE L1 5977 6107 -14 4122 98 8 90 chr3 34599115 34599837 -192924741 - MER4A LTR ERV1 0 664 2 467 183 11 0 chr3 34600045 34600138 -192924440 - LTR16A1 LTR ERVL -19 438 345 264 252 55 71 chr3 34600534 34600743 -192923835 + LTR36 LTR ERV1 400 556 0 444 301 9 69 chr3 34600867 34601083 -192923495 - LTR16A1 LTR ERVL -236 221 19 233 250 27 36 chr3 34601225 34601337 -192923241 - L1M4 LINE L1 -2667 3479 3369 1234 305 109 4 chr3 34601853 34602375 -192922203 + MLT2F LTR ERVL 19 595 -68 563 318 12 6 chr3 34602931 34603104 -192921474 + G-rich Low_complexity Low_complexity 2 175 0 2212 117 3 3 chr3 34603104 34603395 -192921183 - AluSq SINE Alu -22 291 1 438 261 46 15 chr3 34603782 34603912 -192920666 - MIR3 SINE MIR -7 201 68 240 169 99 14 chr3 34604796 34604867 -192919711 - MLT1H LTR MaLR -12 583 507 249 264 91 41 chr3 34604892 34605013 -192919565 - MLT1H LTR MaLR -185 364 238 2588 94 92 8 chr3 34605023 34605511 -192919067 + MER11A LTR ERVK 1 529 -737 631 269 118 41 chr3 34605627 34605758 -192918820 - MLT1H LTR MaLR -185 364 244 4751 170 24 56 chr3 34605758 34606864 -192917714 + MER11C LTR ERVK 1 1071 0 631 269 118 41 chr3 34606864 34607070 -192917508 - MLT1H LTR MaLR -305 244 1 12957 220 24 33 chr3 34607199 34612523 -192912055 - L1PA16 LINE L1 -21 6202 793 307 260 24 32 chr3 34613303 34613426 -192911152 - MLT1K LTR MaLR -160 428 307 1638 215 71 56 chr3 34614180 34614925 -192909653 + L1MC5 LINE L1 6768 7523 -438 422 273 32 39 chr3 34615089 34615243 -192909335 + L1ME3A LINE L1 5975 6127 -43 216 204 0 0 chr3 34615397 34615441 -192909137 + A-rich Low_complexity Low_complexity 1 44 0 320 359 26 13 chr3 34616026 34616260 -192908318 + MLT1H LTR MaLR 21 257 -292 510 324 33 22 chr3 34617434 34617616 -192906962 - MIR SINE MIR -17 245 62 231 281 31 0 chr3 34617785 34617849 -192906729 - L2 LINE L2 0 3272 3207 326 322 42 111 chr3 34618593 34618997 -192905581 - L2 LINE L2 0 3272 2897 292 197 61 0 chr3 34619780 34619846 -192904732 - MLT1L LTR MaLR 0 615 546 617 242 57 44 chr3 34619860 34620087 -192904491 + MLT1J2 LTR MaLR 7 236 -214 463 270 96 103 chr3 34620321 34620642 -192903936 - MLT1L LTR MaLR -166 449 130 1865 161 143 11 chr3 34620642 34621020 -192903558 - MSTA LTR MaLR 0 428 1 463 270 96 103 chr3 34621020 34621135 -192903443 - MLT1L LTR MaLR -485 130 16 580 310 25 15 chr3 34621964 34622207 -192902371 - MIR SINE MIR -17 245 4 787 226 89 5 chr3 34623116 34623306 -192901272 + MER58A DNA MER1_type 13 218 -6 22 35 0 0 chr3 34623402 34623431 -192901147 + AT_rich Low_complexity Low_complexity 1 29 0 2092 152 0 0 chr3 34623624 34623926 -192900652 + AluSx SINE Alu 1 302 -10 246 211 99 0 chr3 34624396 34624467 -192900111 - MIR SINE MIR -58 204 127 293 236 24 126 chr3 34624499 34624567 -192900011 - MER81 DNA DNA 0 114 63 2420 80 0 0 chr3 34624567 34624919 -192899659 + AluY SINE Alu 1 311 0 293 236 24 126 chr3 34624919 34624977 -192899601 - MER81 DNA DNA -51 63 1 560 211 15 38 chr3 34625727 34625860 -192898718 + L2 LINE L2 2231 2360 -954 662 210 7 0 chr3 34625881 34626024 -192898554 - MER77 LTR ERV1 0 605 462 1826 279 82 10 chr3 34626041 34626915 -192897663 + L2 LINE L2 2366 3313 0 1010 195 11 0 chr3 34626912 34627086 -192897492 + MER5A DNA MER1_type 14 189 0 * 237 347 32 32 chr3 34628600 34628724 -192895854 + MIR SINE MIR 1 124 -84 334 258 258 15 chr3 34628760 34628892 -192895686 - MER5B DNA MER1_type -14 164 1 817 163 0 0 chr3 34630606 34630741 -192893837 + AluSp/q SINE Alu 172 306 -7 2114 136 0 3 chr3 34630880 34631182 -192893396 - AluSx SINE Alu -10 302 2 303 319 85 14 chr3 34631742 34631883 -192892695 - MIR SINE MIR -93 169 19 1714 188 39 15 chr3 34634114 34634449 -192890129 - MER61A LTR ERV1 0 343 1 331 230 27 0 chr3 34634620 34634694 -192889884 + MIR3 SINE MIR 93 168 -40 231 333 39 10 chr3 34635158 34635260 -192889318 + MER102a DNA MER1_type 1 105 -225 250 265 41 0 chr3 34635330 34635428 -192889150 + MER102a DNA MER1_type 229 330 0 254 244 22 56 chr3 34637051 34637141 -192887437 - MIR SINE MIR -12 250 164 319 246 104 45 chr3 34637618 34637752 -192886826 - MIR SINE MIR -11 251 110 311 276 86 9 chr3 34637959 34638064 -192886514 - L2 LINE L2 -8 3305 3193 807 168 43 48 chr3 34638590 34638799 -192885779 + MER33 DNA MER1_type 25 232 -92 343 262 75 9 chr3 34639591 34639698 -192884880 + MIR SINE MIR 84 197 -65 747 172 86 0 chr3 34639872 34640058 -192884520 - L1MD3 LINE L1 -22 7973 7772 * 1024 224 59 30 chr3 34640055 34640461 -192884117 - L1MC4a LINE L1 -577 7231 6814 295 305 141 14 chr3 34640710 34640968 -192883610 - L1MCb LINE L1 -5756 666 264 235 315 124 0 chr3 34641441 34641530 -192883048 - L2 LINE L2 -22 3250 3151 646 294 158 41 chr3 34641655 34642074 -192882504 - LTR16C LTR ERVL -23 468 1 210 302 115 0 chr3 34642078 34642174 -192882404 - L2 LINE L2 -242 3030 2924 3786 282 119 22 chr3 34642396 34643937 -192880641 - L2 LINE L2 -716 2598 909 209 291 104 8 chr3 34644927 34645061 -192879517 - MIR SINE MIR -110 152 6 636 228 114 7 chr3 34645766 34645915 -192878663 - MER5A DNA MER1_type -6 183 19 1221 218 127 6 chr3 34646289 34646628 -192877950 - L1ME1 LINE L1 -5 6161 5782 22 70 0 0 chr3 34646833 34646876 -192877702 + AT_rich Low_complexity Low_complexity 1 43 0 31 26 0 0 chr3 34646899 34646937 -192877641 + AT_rich Low_complexity Low_complexity 1 38 0 6531 7 1 0 chr3 34647676 34648441 -192876137 + L1HS LINE L1 5390 6155 0 195 114 0 0 chr3 34648442 34648477 -192876101 + (A)n Simple_repeat Simple_repeat 1 35 0 2417 199 14 3 chr3 34648588 34649241 -192875337 + L1HS LINE L1 5496 6155 0 366 74 0 0 chr3 34649248 34649302 -192875276 + (A)n Simple_repeat Simple_repeat 1 54 0 264 274 12 0 chr3 34649493 34649577 -192875001 + L1ME LINE L1 5726 5810 -354 1028 207 22 14 chr3 34649600 34649822 -192874756 - MER58A DNA MER1_type 0 224 1 538 252 161 0 chr3 34651930 34652085 -192872493 + MER5A DNA MER1_type 9 188 -1 320 200 139 73 chr3 34653664 34653829 -192870749 + MLT1K LTR MaLR 394 569 -19 243 232 0 18 chr3 34654159 34654215 -192870363 - MIR SINE MIR -133 129 75 2406 77 17 0 chr3 34654498 34654797 -192869781 + AluSq SINE Alu 3 306 -7 273 251 146 96 chr3 34655012 34655231 -192869347 + MIR SINE MIR 20 249 -13 488 89 13 0 chr3 34656013 34656092 -192868486 + (TG)n Simple_repeat Simple_repeat 2 81 0 230 326 82 5 chr3 34657153 34657337 -192867241 - LTR16C LTR ERVL -67 424 227 2339 104 0 0 chr3 34657448 34657755 -192866823 + AluSx SINE Alu 1 307 -5 360 338 19 25 chr3 34657899 34658059 -192866519 - MIR SINE MIR -86 176 18 1661 250 128 13 chr3 34659263 34659795 -192864783 + MLT1E LTR MaLR 1 593 0 650 303 86 52 chr3 34659891 34660215 -192864363 + MLT1H LTR MaLR 215 549 0 2375 106 0 0 chr3 34664512 34664815 -192859763 + AluSx SINE Alu 1 303 -9 22 0 0 0 chr3 34666138 34666160 -192858418 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr3 34667127 34667155 -192857423 + AT_rich Low_complexity Low_complexity 1 28 0 348 230 42 48 chr3 34668016 34668181 -192856397 + MER103 DNA DNA 3 166 0 2235 110 10 16 chr3 34668567 34668877 -192855701 + AluSx SINE Alu 1 308 -4 871 320 15 7 chr3 34670422 34670694 -192853884 + LTR16C LTR ERVL 88 361 -130 22 35 0 0 chr3 34671225 34671254 -192853324 + AT_rich Low_complexity Low_complexity 1 29 0 222 118 0 0 chr3 34672058 34672092 -192852486 + (TTA)n Simple_repeat Simple_repeat 3 36 0 630 197 8 16 chr3 34672093 34672215 -192852363 - FLAM_C SINE Alu -22 121 1 30 0 0 0 chr3 34672217 34672247 -192852331 + AT_rich Low_complexity Low_complexity 1 30 0 4290 111 18 0 chr3 34672360 34673102 -192851476 - L1P4 LINE L1 -735 5433 4680 798 226 119 18 chr3 34673906 34674132 -192850446 - MIR SINE MIR -12 250 2 2226 107 3 22 chr3 34675123 34675441 -192849137 - AluSx SINE Alu 0 312 1 21 57 0 0 chr3 34675684 34675719 -192848859 + AT_rich Low_complexity Low_complexity 1 35 0 1486 243 57 33 chr3 34675851 34676179 -192848399 + L1ME3 LINE L1 5602 5950 -212 2315 118 11 32 chr3 34676179 34676551 -192848027 + THE1B LTR MaLR 1 364 0 1486 243 57 33 chr3 34676551 34676762 -192847816 + L1ME3 LINE L1 5950 6154 -8 21 57 0 0 chr3 34676762 34676797 -192847781 + AT_rich Low_complexity Low_complexity 1 35 0 1501 106 53 39 chr3 34676932 34677216 -192847362 + THE1C LTR MaLR 88 375 0 194 405 67 0 chr3 34678122 34678211 -192846367 - L2 LINE L2 -231 3041 2947 464 275 121 62 chr3 34678518 34678962 -192845616 - L2 LINE L2 -191 3081 2612 515 295 161 5 chr3 34679212 34679429 -192845149 - MIR SINE MIR 0 262 12 250 310 0 0 chr3 34681156 34681227 -192843351 + MER5A DNA MER1_type 12 82 -107 451 225 163 31 chr3 34681355 34681515 -192843063 + MER5A DNA MER1_type 9 189 0 272 229 12 36 chr3 34681527 34681610 -192842968 - MER5B DNA MER1_type 0 178 98 344 256 30 11 chr3 34681612 34681750 -192842828 - MER91A DNA MER1_type -4 192 1 207 0 0 0 chr3 34681816 34681839 -192842739 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 592 203 51 83 chr3 34681850 34682140 -192842438 - L1MC5 LINE L1 -34 7927 7648 1956 154 11 45 chr3 34682140 34682497 -192842081 - MER7A DNA MER2_type -2 344 2 592 203 51 83 chr3 34682497 34682556 -192842022 - L1MC5 LINE L1 -313 7648 7589 1911 219 55 78 chr3 34682697 34682859 -192841719 - L1MC5 LINE L1 -465 7496 7332 939 243 23 0 chr3 34682859 34683077 -192841501 - MER58A DNA MER1_type 0 224 2 1911 219 55 78 chr3 34683077 34683844 -192840734 - L1MC5 LINE L1 -629 7332 6558 336 326 96 41 chr3 34684488 34684706 -192839872 - L2 LINE L2 -5 3267 3038 249 313 70 43 chr3 34686235 34686350 -192838228 - MIR3 SINE MIR -6 202 85 367 248 166 73 chr3 34687788 34688090 -192836488 + MLT1I LTR MaLR 70 399 -10 2226 108 3 0 chr3 34688308 34688603 -192835975 + AluSp SINE Alu 1 296 -17 273 309 122 16 chr3 34689721 34689844 -192834734 - MIR SINE MIR -32 230 95 735 144 8 23 chr3 34689953 34690085 -192834493 + FLAM_C SINE Alu 2 131 -2 278 267 22 33 chr3 34690117 34690207 -192834371 - MIR SINE MIR -96 166 78 2509 71 0 0 chr3 34690919 34691227 -192833351 - AluY SINE Alu -3 308 1 736 241 148 67 chr3 34692737 34693459 -192831119 + LTR41 LTR ERVL 1 795 0 2487 309 69 48 chr3 34694094 34695523 -192829055 + ERVL LTR ERVL 765 2223 -3541 445 267 0 9 chr3 34695527 34695632 -192828946 + L2 LINE L2 3210 3313 0 203 143 0 24 chr3 34697232 34697274 -192827304 + (TTTCC)n Simple_repeat Simple_repeat 4 44 0 26 30 0 0 chr3 34698450 34698483 -192826095 + AT_rich Low_complexity Low_complexity 1 33 0 258 202 140 61 chr3 34698670 34698784 -192825794 - MER112 DNA MER1_type -6 254 132 225 246 0 0 chr3 34698887 34698952 -192825626 + CT-rich Low_complexity Low_complexity 2 66 0 581 311 30 33 chr3 34698952 34699286 -192825292 - L1MC4a LINE L1 -1870 5938 5606 256 276 102 10 chr3 34699308 34699406 -192825172 - L1MC4a LINE L1 -2247 5561 5455 1766 136 0 0 chr3 34699553 34699803 -192824775 - AluJb SINE Alu -28 284 35 231 67 0 0 chr3 34700550 34700580 -192823998 - MIR SINE MIR -114 148 119 988 208 0 5 chr3 34700580 34700787 -192823791 + MLT1A1 LTR MaLR 1 206 -159 192 389 11 11 chr3 34701702 34701792 -192822786 - L2 LINE L2 -369 2903 2814 235 256 66 5 chr3 34701891 34701962 -192822616 + MIR SINE MIR 80 143 -65 506 260 34 38 chr3 34702549 34702784 -192821794 + LTR37B LTR ERV1 176 409 -59 58 15 0 0 chr3 34703887 34703952 -192820626 + AT_rich Low_complexity Low_complexity 1 65 0 9461 148 24 10 chr3 34704123 34705685 -192818893 + Tigger1 DNA MER2_type 1 1584 -834 347 279 9 0 chr3 34705687 34705798 -192818780 + L1PB1 LINE L1 79 190 -6673 * 13944 198 35 22 chr3 34705778 34707855 -192816723 + L1PB1 LINE L1 872 2921 -3946 2518 66 3 0 chr3 34707855 34708156 -192816422 + AluY SINE Alu 1 302 -9 13944 198 35 22 chr3 34708156 34710037 -192814541 + L1PB1 LINE L1 2921 4776 -2091 2263 92 0 0 chr3 34710037 34710379 -192814199 + AluSc SINE Alu 1 342 0 13944 198 35 22 chr3 34710379 34711807 -192812771 + L1PB1 LINE L1 4776 6512 -355 450 0 0 0 chr3 34711807 34711857 -192812721 + (TA)n Simple_repeat Simple_repeat 2 51 0 13944 198 35 22 chr3 34711857 34712163 -192812415 + L1PB1 LINE L1 6512 6813 -54 25 0 0 0 chr3 34712186 34712211 -192812367 + AT_rich Low_complexity Low_complexity 1 25 0 4969 141 19 2 chr3 34712218 34713020 -192811558 + Tigger1 DNA MER2_type 1603 2417 -1 1084 241 74 27 chr3 34713990 34714393 -192810185 - MER113 DNA MER1_type? -96 425 4 23 0 0 0 chr3 34714986 34715009 -192809569 + AT_rich Low_complexity Low_complexity 1 23 0 2114 125 0 0 chr3 34715501 34715797 -192808781 + AluSx SINE Alu 1 296 -16 1783 112 0 0 chr3 34716651 34716907 -192807671 + AluSx SINE Alu 52 307 0 2373 74 3 3 chr3 34718231 34718529 -192806049 - AluY SINE Alu -13 298 1 188 170 21 21 chr3 34719059 34719106 -192805472 + MER5C DNA MER1_type 273 319 -5 603 209 162 11 chr3 34719264 34719542 -192805036 - MER33 DNA MER1_type -1 323 4 417 297 54 0 chr3 34719952 34720063 -192804515 - L2 LINE L2 0 3313 3197 264 30 0 0 chr3 34721253 34721286 -192803292 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2107 116 3 0 chr3 34721555 34721848 -192802730 + AluSq SINE Alu 1 294 -19 863 95 16 166 chr3 34722763 34722863 -192801715 - L1M2 LINE L1 -642 5658 5606 2057 123 10 3 chr3 34722863 34723164 -192801414 - AluSc SINE Alu -6 303 1 863 95 16 166 chr3 34723164 34723282 -192801296 - L1M2 LINE L1 -694 5606 5472 327 238 129 20 chr3 34723558 34723659 -192800919 + MIR SINE MIR 7 119 -89 9047 54 3 1 chr3 34723872 34725029 -192799549 - L1P LINE L1 -1097 5049 3891 842 180 0 34 chr3 34725133 34725311 -192799267 + L1M4 LINE L1 3524 3695 -2451 206 31 0 31 chr3 34725311 34725343 -192799235 + (GAAAA)n Simple_repeat Simple_repeat 5 35 0 1340 160 18 5 chr3 34725359 34725606 -192798972 + AluJb SINE Alu 64 313 0 3792 160 14 32 chr3 34725606 34726325 -192798253 + L1M4 LINE L1 3741 4446 -1700 1929 125 57 16 chr3 34726352 34726719 -192797859 + L1MA2 LINE L1 5923 6304 0 992 122 19 6 chr3 34726744 34726900 -192797678 + L1PA15 LINE L1 5987 6144 -21 585 258 0 0 chr3 34727754 34727874 -192796704 - FLAM_A SINE Alu -13 120 1 2196 136 0 0 chr3 34728606 34728915 -192795663 + AluSx SINE Alu 1 309 -3 1993 144 3 3 chr3 34728920 34729212 -192795366 + AluSx SINE Alu 1 292 -20 329 115 0 33 chr3 34729215 34729276 -192795302 + (GGGAA)n Simple_repeat Simple_repeat 4 62 0 1193 275 126 29 chr3 34729571 34729926 -192794652 + L2 LINE L2 2588 2907 -406 2161 144 40 80 chr3 34729926 34730378 -192794200 - Tigger2a DNA MER2_type 0 434 1 1193 275 126 29 chr3 34730378 34730659 -192793919 + L2 LINE L2 2907 3312 -1 1094 187 49 169 chr3 34730738 34730882 -192793696 + L1M4 LINE L1 4615 4775 -1371 1231 104 38 104 chr3 34730882 34731170 -192793408 + L1MA8 LINE L1 6017 6285 -6 1094 187 49 169 chr3 34731170 34731274 -192793304 + L1M4 LINE L1 4775 4890 -1256 4105 154 32 3 chr3 34731274 34732027 -192792551 + L1MA4 LINE L1 5514 6288 -12 1094 187 49 169 chr3 34732027 34732488 -192792090 + L1M4 LINE L1 4890 5240 -906 1947 126 25 0 chr3 34734482 34734759 -192789819 + AluSx SINE Alu 1 284 -28 205 196 39 0 chr3 34734945 34734996 -192789582 + CT-rich Low_complexity Low_complexity 3 55 0 6408 127 27 18 chr3 34735190 34735316 -192789262 - L1 LINE L1 -3490 4075 3952 1825 159 47 16 chr3 34735316 34735680 -192788898 + THE1C LTR MaLR 1 375 0 6408 127 27 18 chr3 34735680 34736537 -192788041 - L1 LINE L1 -3613 3952 3074 2407 78 0 0 chr3 34736537 34736831 -192787747 - AluY SINE Alu -17 294 1 6408 127 27 18 chr3 34736831 34737281 -192787297 - L1 LINE L1 -4491 3074 2630 959 235 59 29 chr3 34737350 34737588 -192786990 - MIR SINE MIR 0 262 18 2878 125 0 2 chr3 34737646 34738055 -192786523 + MSTA LTR MaLR 21 428 0 23 68 0 0 chr3 34738345 34738389 -192786189 + AT_rich Low_complexity Low_complexity 1 44 0 766 270 126 18 chr3 34738402 34738728 -192785850 - L2 LINE L2 -1 3312 2952 322 278 87 9 chr3 34739038 34739153 -192785425 - L2 LINE L2 -261 3011 2888 1688 139 27 4 chr3 34739288 34739546 -192785032 + AluSx SINE Alu 19 282 -30 777 271 50 25 chr3 34740090 34740367 -192784211 + MLT1J LTR MaLR 107 390 -121 363 214 43 3 chr3 34740385 34740486 -192784092 - MIR SINE MIR -89 119 7 1632 109 9 102 chr3 34740776 34740878 -192783700 + L1MA4 LINE L1 5488 5598 -702 2350 86 10 3 chr3 34740878 34741181 -192783397 + AluSc SINE Alu 1 305 -4 1632 109 9 102 chr3 34741181 34741400 -192783178 + L1MA4 LINE L1 5598 5779 -521 834 128 5 64 chr3 34741404 34741591 -192782987 + L1MA4 LINE L1 6119 6294 -6 29 60 0 0 chr3 34741591 34741641 -192782937 + AT_rich Low_complexity Low_complexity 1 50 0 472 230 43 22 chr3 34741686 34741825 -192782753 - MER58B DNA MER1_type -10 331 190 21 82 0 0 chr3 34742789 34742838 -192781740 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr3 34744347 34744368 -192780210 + AT_rich Low_complexity Low_complexity 1 21 0 2280 85 0 10 chr3 34746083 34746378 -192778200 + AluY SINE Alu 1 292 -19 265 250 0 18 chr3 34746579 34746635 -192777943 + L2 LINE L2 3204 3258 -14 253 193 0 35 chr3 34746586 34746643 -192777935 + MIR SINE MIR 206 260 -2 * 273 184 0 16 chr3 34747620 34747691 -192776887 - MLT1H LTR MaLR 0 595 480 448 230 85 71 chr3 34747748 34748031 -192776547 - MLT1H LTR MaLR -188 361 75 263 302 19 0 chr3 34748206 34748312 -192776266 - LTR41 LTR ERVL -6 767 660 416 240 107 7 chr3 34748804 34748954 -192775624 - LTR41 LTR ERVL -608 165 1 345 24 0 0 chr3 34749470 34749512 -192775066 + (CA)n Simple_repeat Simple_repeat 2 43 0 218 182 0 65 chr3 34750047 34750124 -192774454 + (TTTA)n Simple_repeat Simple_repeat 2 73 0 680 202 42 60 chr3 34750788 34750956 -192773622 + MIR SINE MIR 23 187 -75 246 32 0 0 chr3 34750965 34750996 -192773582 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 1400 268 89 4 chr3 34751592 34752043 -192772535 - LTR16C LTR ERVL -2 489 1 2269 114 0 7 chr3 34752389 34752688 -192771890 + AluSx SINE Alu 1 297 -15 286 346 62 0 chr3 34753523 34753653 -192770925 - L3b LINE CR1 -263 1320 1183 1501 131 49 30 chr3 34754227 34754547 -192770031 + MER51A LTR ERV1 149 551 -83 420 20 0 0 chr3 34754547 34754596 -192769982 + (CA)n Simple_repeat Simple_repeat 1 49 0 2432 245 61 21 chr3 34755401 34756273 -192768305 + L1ME2 LINE L1 5258 6164 0 550 281 4 71 chr3 34757113 34757380 -192767198 + MLT2C1 LTR ERVL 128 376 -21 223 340 219 21 chr3 34757626 34757905 -192766673 - L2 LINE L2 -767 2547 2214 556 248 25 8 chr3 34758337 34758458 -192766120 + L2 LINE L2 3189 3311 -2 726 84 0 0 chr3 34759391 34759486 -192765092 + AluY SINE Alu 209 303 -8 345 335 35 12 chr3 34759650 34759821 -192764757 + MIR SINE MIR 23 196 -66 224 179 75 30 chr3 34761828 34761895 -192762683 - MIR SINE MIR -65 197 128 616 196 20 13 chr3 34762003 34762156 -192762422 + L1MC5 LINE L1 7717 7870 -91 330 250 130 0 chr3 34763868 34763976 -192760602 + MIR SINE MIR 128 249 -13 470 327 146 11 chr3 34764017 34764366 -192760212 + L2 LINE L2 2489 2884 -430 225 0 0 0 chr3 34764454 34764479 -192760099 + (T)n Simple_repeat Simple_repeat 1 25 0 309 312 104 8 chr3 34764680 34764805 -192759773 + L2 LINE L2 3136 3272 0 2230 58 41 7 chr3 34764975 34765267 -192759311 - AluY SINE Alu -9 302 1 253 385 120 5 chr3 34766472 34766664 -192757914 + L2 LINE L2 2899 3112 -160 336 317 10 0 chr3 34766733 34766834 -192757744 - MIR SINE MIR 0 262 161 1651 223 61 23 chr3 34766854 34767294 -192757284 + LTR2B LTR ERV1 34 490 0 255 319 217 29 chr3 34767294 34767432 -192757146 - MIR SINE MIR -98 164 1 553 328 20 44 chr3 34767842 34768012 -192756566 - MIR SINE MIR -1 261 97 2238 117 0 22 chr3 34768012 34768328 -192756250 - AluSq SINE Alu -4 309 1 553 328 20 44 chr3 34768328 34768407 -192756171 - MIR SINE MIR -165 97 18 1416 173 81 16 chr3 34768430 34768650 -192755928 - L1P LINE L1 -1803 4343 4096 894 45 0 0 chr3 34768650 34768761 -192755817 - L1PA4 LINE L1 0 6155 6045 1416 173 81 16 chr3 34768761 34768847 -192755731 - L1P LINE L1 -2050 4096 4017 6093 99 11 3 chr3 34768847 34769643 -192754935 + L1PA13 LINE L1 4351 5139 -1024 2255 99 3 10 chr3 34769643 34769956 -192754622 + AluY SINE Alu 1 311 0 6093 99 11 3 chr3 34769956 34770977 -192753601 + L1PA13 LINE L1 5139 6159 -4 846 261 133 38 chr3 34771374 34771826 -192752752 - L2 LINE L2 0 3313 2819 1913 123 29 0 chr3 34772730 34773033 -192751545 + AluSx SINE Alu 1 311 0 24 32 0 0 chr3 34773049 34773080 -192751498 + AT_rich Low_complexity Low_complexity 1 31 0 1512 115 4 47 chr3 34774264 34774517 -192750061 - L1PB2 LINE L1 -7 6144 5903 4311 72 40 9 chr3 34774517 34775606 -192748972 + MER11A LTR ERVK 5 1266 0 7096 174 78 20 chr3 34775606 34775777 -192748801 - L1PA10 LINE L1 -256 5969 5809 10465 150 8 2 chr3 34775777 34778394 -192746184 - L1PA12 LINE L1 -1 6167 3554 7096 174 78 20 chr3 34778394 34783436 -192741142 - L1PA10 LINE L1 -416 5809 230 718 303 122 3 chr3 34784645 34784949 -192739629 + L2 LINE L2 1367 1706 -1608 228 205 0 0 chr3 34784961 34785000 -192739578 + L2 LINE L2 3222 3260 -12 264 59 0 0 chr3 34785001 34785035 -192739543 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 225 159 0 0 chr3 34785679 34785723 -192738855 + CT-rich Low_complexity Low_complexity 2 45 0 2251 75 0 46 chr3 34785733 34786039 -192738539 + AluY SINE Alu 1 292 -19 493 328 12 41 chr3 34786091 34786335 -192738243 + LTR67 LTR ERVL 2 238 -319 226 327 20 0 chr3 34786439 34786540 -192738038 + LTR67 LTR ERVL 405 507 -50 3531 74 0 0 chr3 34786667 34787111 -192737467 + MLT2A1 LTR ERVL 1 444 0 297 270 132 26 chr3 34787160 34787312 -192737266 - MIR SINE MIR 0 262 95 1006 184 77 4 chr3 34787910 34788143 -192736435 - MLT1C LTR MaLR -215 252 3 278 294 185 60 chr3 34788157 34788525 -192736053 - L2 LINE L2 -911 2403 1990 253 252 50 22 chr3 34789371 34789510 -192735068 - L1ME4a LINE L1 -2 6119 5977 2075 113 7 0 chr3 34789609 34789916 -192734662 - AluSx SINE Alu 0 309 1 1057 231 56 36 chr3 34790122 34790425 -192734153 - MER76 LTR ERV -379 309 1 1139 187 51 12 chr3 34790425 34791395 -192733183 - L1ME4a LINE L1 -565 5619 4566 1409 206 129 45 chr3 34791400 34791866 -192732712 + MLT1D LTR MaLR 1 505 0 1793 223 19 10 chr3 34791866 34792350 -192732228 - L1ME4a LINE L1 -1590 4556 4069 2766 197 27 24 chr3 34792357 34793027 -192731551 - MER67C LTR ERV1 0 710 39 783 246 33 33 chr3 34793062 34793367 -192731211 - L1ME4a LINE L1 -2056 4090 3786 1994 153 26 0 chr3 34793547 34793893 -192730685 + MER44D DNA MER2_type 196 605 0 621 213 25 6 chr3 34793893 34794053 -192730525 - L1ME4a LINE L1 -2362 3784 3622 2059 133 141 3 chr3 34794053 34794429 -192730149 + MSTA LTR MaLR 1 428 0 887 110 123 7 chr3 34794430 34794584 -192729994 - MER4E LTR ERV1 -594 172 1 614 293 148 27 chr3 34794821 34795118 -192729460 - MLT1G1 LTR MaLR -33 562 230 248 197 15 45 chr3 34795137 34795203 -192729375 - MLT1J2 LTR MaLR -288 162 99 2284 132 91 5 chr3 34795640 34796034 -192728544 + MSTA LTR MaLR 1 428 0 4656 158 50 8 chr3 34797303 34798170 -192726408 - MER4D LTR ERV1 0 903 1 2095 93 25 3 chr3 34798413 34798736 -192725842 - MER51B LTR ERV1 0 377 48 762 156 0 7 chr3 34798873 34799008 -192725570 - MER4D LTR ERV1 -769 134 1 2525 72 20 80 chr3 34799252 34799652 -192724926 - MER51B LTR ERV1 0 377 2 204 40 0 0 chr3 34800687 34800712 -192723866 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 414 181 86 29 chr3 34800714 34800819 -192723759 + L2 LINE L2 3170 3280 -33 1619 160 82 130 chr3 34801779 34802074 -192722504 - LTR49 LTR ERV1 0 595 344 2048 166 68 36 chr3 34802074 34802489 -192722089 + MSTC LTR MaLR 1 428 0 1619 160 82 130 chr3 34802489 34802818 -192721760 - LTR49 LTR ERV1 -251 344 1 418 214 67 22 chr3 34803323 34803501 -192721077 - MER53 DNA DNA 0 189 4 329 280 80 84 chr3 34803801 34804040 -192720538 + L2 LINE L2 2292 2529 -785 254 214 12 0 chr3 34804500 34804584 -192719994 + (CA)n Simple_repeat Simple_repeat 2 86 0 197 218 10 183 chr3 34806102 34806299 -192718279 + L2 LINE L2 3054 3216 -97 862 163 0 7 chr3 34806403 34806556 -192718022 + MLT1A1 LTR MaLR 1 152 -213 6809 30 0 1 chr3 34806570 34807432 -192717146 - L1P LINE L1 -844 5302 4442 1310 260 2 4 chr3 34807561 34808022 -192716556 + L1PA2 LINE L1 5696 6155 0 195 42 0 0 chr3 34808035 34808059 -192716519 + (A)n Simple_repeat Simple_repeat 1 24 0 27 29 0 0 chr3 34808849 34808883 -192715695 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr3 34809432 34809459 -192715119 + AT_rich Low_complexity Low_complexity 1 27 0 1111 121 131 15 chr3 34810525 34810731 -192713847 - MER30 DNA MER1_type 0 230 1 657 203 14 0 chr3 34810773 34810916 -192713662 + LTR16C LTR ERVL 345 489 -2 315 0 0 0 chr3 34811344 34811379 -192713199 + (CA)n Simple_repeat Simple_repeat 2 36 0 269 256 188 30 chr3 34812226 34812359 -192712219 - L2 LINE L2 0 3313 3160 2429 100 0 0 chr3 34813329 34813639 -192710939 - AluSg SINE Alu 0 310 1 227 354 26 0 chr3 34813969 34814081 -192710497 - MIR SINE MIR 0 262 148 479 260 6 89 chr3 34814081 34814207 -192710371 + MIR SINE MIR 3 113 -149 2392 73 0 25 chr3 34814207 34814521 -192710057 - AluY SINE Alu -5 306 1 479 260 6 89 chr3 34814521 34814563 -192710015 + MIR SINE MIR 113 157 -105 24 0 0 0 chr3 34814601 34814625 -192709953 + AT_rich Low_complexity Low_complexity 1 24 0 25208 39 0 1 chr3 34814652 34818538 -192706040 - L1PA4 LINE L1 -7 6148 2263 13750 64 16 0 chr3 34818538 34820379 -192704199 - L1PA4 LINE L1 -4276 1870 1 366 270 20 74 chr3 34820423 34820571 -192704007 - MIR SINE MIR -95 167 28 1152 241 26 0 chr3 34820588 34820932 -192703646 + L1M4 LINE L1 3502 3854 -2292 379 171 0 0 chr3 34820946 34821016 -192703562 + L1PA16 LINE L1 6079 6148 -18 1855 145 0 7 chr3 34821036 34821319 -192703259 + AluSq SINE Alu 1 281 -32 423 0 0 0 chr3 34821319 34821366 -192703212 + (TAAA)n Simple_repeat Simple_repeat 1 47 0 850 235 67 24 chr3 34821371 34821669 -192702909 + L1M4 LINE L1 3836 4146 -2000 * 1160 225 50 59 chr3 34821665 34822006 -192702572 - L1ME LINE L1 -470 5696 5354 600 164 29 0 chr3 34822006 34822110 -192702468 - U6 snRNA snRNA 0 107 1 1160 225 50 59 chr3 34822110 34822229 -192702349 - L1ME LINE L1 -812 5354 5235 2513 56 7 3 chr3 34822229 34822531 -192702047 - AluY SINE Alu -8 303 1 1160 225 50 59 chr3 34822531 34822859 -192701719 - L1ME LINE L1 -931 5235 4901 480 273 68 0 chr3 34822868 34823029 -192701549 + L2 LINE L2 2258 2429 -885 709 197 64 32 chr3 34823053 34823271 -192701307 + LTR41 LTR ERVL 1 225 -548 289 246 29 0 chr3 34823631 34823700 -192700878 + LTR41 LTR ERVL 514 584 -189 432 129 24 35 chr3 34823770 34823855 -192700723 + Tigger1 DNA MER2_type 4 87 -2331 10351 129 21 10 chr3 34823969 34825686 -192698892 + Tigger1 DNA MER2_type 682 2418 0 392 188 13 84 chr3 34825686 34825836 -192698742 + LTR41 LTR ERVL 635 773 0 227 132 66 118 chr3 34825853 34825929 -192698649 + L2 LINE L2 2500 2571 -743 1800 236 17 61 chr3 34825931 34826523 -192698055 + MLT1F1 LTR MaLR 2 567 0 391 261 37 118 chr3 34826523 34826795 -192697783 + L2 LINE L2 2568 2817 -497 212 253 91 91 chr3 34826799 34827064 -192697514 + L2 LINE L2 3036 3300 -13 695 62 10 0 chr3 34827065 34827162 -192697416 + (TCTA)n Simple_repeat Simple_repeat 1 98 0 263 399 54 0 chr3 34828614 34828762 -192695816 - L2 LINE L2 0 3272 3117 311 291 73 55 chr3 34828949 34829114 -192695464 - L2 LINE L2 -222 3050 2883 244 282 94 17 chr3 34829319 34829436 -192695142 + MIR SINE MIR 15 140 -122 231 218 0 0 chr3 34830574 34830629 -192693949 + (CA)n Simple_repeat Simple_repeat 1 55 0 222 214 0 0 chr3 34832072 34832114 -192692464 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 308 304 197 6 chr3 34832252 34832565 -192692013 - L2 LINE L2 -176 3096 2709 192 337 0 76 chr3 34832633 34832805 -192691773 + L2 LINE L2 2470 2628 -686 617 291 114 0 chr3 34833092 34833329 -192691249 + MLT1L LTR MaLR 352 615 0 252 303 43 25 chr3 34833455 34833617 -192690961 + L2 LINE L2 2829 2993 -279 491 193 0 46 chr3 34833735 34833844 -192690734 + MLT1I LTR MaLR 106 209 -200 605 217 101 48 chr3 34833932 34834121 -192690457 - MER58C DNA MER1_type -8 207 9 215 269 179 0 chr3 34834335 34834413 -192690165 + L2 LINE L2 3140 3231 -41 1204 54 7 0 chr3 34835837 34835984 -192688594 + AluSc SINE Alu 1 148 -161 198 0 0 0 chr3 34836047 34836069 -192688509 + (A)n Simple_repeat Simple_repeat 1 22 0 1082 102 7 0 chr3 34836777 34836924 -192687654 + AluSc SINE Alu 1 148 -161 216 0 0 0 chr3 34836985 34837009 -192687569 + (A)n Simple_repeat Simple_repeat 1 24 0 332 287 35 81 chr3 34837042 34837216 -192687362 + HAL1 LINE L1 103 268 -2239 419 301 111 18 chr3 34837395 34837727 -192686851 + HAL1 LINE L1 550 912 -1595 365 164 14 0 chr3 34837766 34837839 -192686739 + (TG)n Simple_repeat Simple_repeat 1 74 0 1436 272 134 34 chr3 34837919 34839071 -192685507 + HAL1 LINE L1 1013 2279 -228 408 176 39 17 chr3 34839409 34839649 -192684929 + (TA)n Simple_repeat Simple_repeat 1 245 0 25 0 0 0 chr3 34839718 34839743 -192684835 + AT_rich Low_complexity Low_complexity 1 25 0 380 194 10 19 chr3 34840326 34840429 -192684149 + Charlie7 DNA MER1_type 2511 2612 0 1065 172 0 20 chr3 34840930 34840993 -192683585 - MER3 DNA MER1_type -3 206 143 2018 132 3 3 chr3 34840993 34841288 -192683290 + AluSx SINE Alu 1 295 -17 1065 172 0 20 chr3 34841288 34841428 -192683150 - MER3 DNA MER1_type -66 143 7 195 125 0 0 chr3 34842409 34842449 -192682129 + (A)n Simple_repeat Simple_repeat 1 40 0 432 299 0 0 chr3 34842708 34842845 -192681733 - L1MC4a LINE L1 -1965 5843 5707 2413 81 0 3 chr3 34842966 34843275 -192681303 - AluY SINE Alu -3 308 1 1985 122 3 26 chr3 34843275 34843579 -192680999 - AluSx SINE Alu -15 297 1 189 0 0 0 chr3 34844026 34844047 -192680531 + (A)n Simple_repeat Simple_repeat 1 21 0 242 114 0 0 chr3 34846332 34846367 -192678211 + U2 snRNA snRNA 2 36 -152 1543 97 0 0 chr3 34846485 34846680 -192677898 - AluSx SINE Alu -117 195 1 556 118 88 0 chr3 34847022 34847124 -192677454 - L1MB1 LINE L1 -5 6163 6053 2441 73 0 3 chr3 34847290 34847590 -192676988 + AluY SINE Alu 1 299 -12 229 331 57 24 chr3 34847749 34847873 -192676705 - MIR SINE MIR -65 197 70 261 373 75 63 chr3 34848309 34848577 -192676001 - L2 LINE L2 0 3272 3002 344 306 124 61 chr3 34848604 34849048 -192675530 - L2 LINE L2 -378 2936 2465 296 127 0 18 chr3 34849117 34849172 -192675406 - MADE1 DNA Mariner 0 80 27 242 114 0 0 chr3 34849366 34849401 -192675177 - U2 snRNA snRNA -152 36 2 230 287 30 42 chr3 34851546 34851713 -192672865 + L2 LINE L2 2813 2977 -295 310 218 82 0 chr3 34851822 34851932 -192672646 - L1ME4a LINE L1 -6 6115 5997 440 300 41 70 chr3 34852711 34852954 -192671624 - MIR SINE MIR -13 249 14 346 284 0 0 chr3 34853127 34853229 -192671349 + (TA)n Simple_repeat Simple_repeat 1 102 0 371 260 40 10 chr3 34854005 34854105 -192670473 + L2 LINE L2 3168 3270 -2 353 255 159 13 chr3 34854115 34854272 -192670306 - MIR SINE MIR -51 211 32 526 289 33 38 chr3 34854422 34854608 -192669970 - MIR SINE MIR -42 220 28 2447 123 5 19 chr3 34854649 34855016 -192669562 + THE1B LTR MaLR 1 362 -2 11610 102 4 2 chr3 34855018 34856596 -192667982 + THE1B-int LTR MaLR 1 1580 0 2259 100 5 95 chr3 34856596 34856995 -192667583 + THE1B LTR MaLR 1 363 -1 426 216 21 89 chr3 34857013 34857203 -192667375 - L1ME3 LINE L1 -29 6133 5957 314 325 175 0 chr3 34857527 34857687 -192666891 - MER91A DNA MER1_type -8 188 1 308 262 244 0 chr3 34858362 34858591 -192665987 - L1ME3 LINE L1 -1000 5146 4862 393 311 57 45 chr3 34858676 34858853 -192665725 - HAL1b LINE L1 -1100 248 70 202 356 0 0 chr3 34860976 34861035 -192663543 - L2 LINE L2 -23 3249 3191 730 276 0 28 chr3 34861605 34861819 -192662759 - MER58A DNA MER1_type -16 208 1 1246 117 0 11 chr3 34861877 34862057 -192662521 + AluSg/x SINE Alu 133 310 -2 207 0 0 0 chr3 34862125 34862148 -192662430 + (TAA)n Simple_repeat Simple_repeat 2 24 0 282 325 123 31 chr3 34862355 34862712 -192661866 + L2 LINE L2 2140 2529 -785 381 234 161 8 chr3 34863170 34863294 -192661284 + MIR SINE MIR 115 257 -5 2264 107 16 47 chr3 34864503 34864888 -192659690 - THE1C LTR MaLR 0 375 3 223 222 0 0 chr3 34866200 34866245 -192658333 - MIR SINE MIR -17 245 201 239 263 0 0 chr3 34866698 34866774 -192657804 + MER113 DNA MER1_type? 2 77 -444 22 70 0 0 chr3 34867712 34867755 -192656823 + AT_rich Low_complexity Low_complexity 1 43 0 190 231 19 19 chr3 34868246 34868298 -192656280 - MIR SINE MIR -90 172 121 1501 136 0 42 chr3 34869562 34869798 -192654780 + AluSg/x SINE Alu 85 310 -2 743 174 0 0 chr3 34870017 34870132 -192654446 + FLAM_A SINE Alu 1 115 -18 2220 99 7 0 chr3 34870224 34870517 -192654061 - AluSq SINE Alu -18 295 1 373 253 0 22 chr3 34871117 34871208 -192653370 - MIR3 SINE MIR -10 198 110 431 250 181 0 chr3 34871288 34871432 -192653146 + MER5A DNA MER1_type 20 189 0 199 313 15 0 chr3 34872118 34872185 -192652393 - L2 LINE L2 -4 3268 3201 191 325 12 77 chr3 34872309 34872478 -192652100 - L2 LINE L2 -182 3090 2933 205 167 37 0 chr3 34873282 34873336 -192651242 + GA-rich Low_complexity Low_complexity 2 57 0 330 280 114 0 chr3 34873336 34873468 -192651110 + MER103 DNA DNA 1 147 -19 192 175 32 111 chr3 34874219 34874282 -192650296 + L2 LINE L2 2697 2754 -560 2304 53 0 3 chr3 34874290 34874609 -192649969 - AluY SINE Alu 0 318 1 189 353 32 39 chr3 34874731 34874887 -192649691 - L2 LINE L2 -833 2481 2327 762 105 21 35 chr3 34874894 34875037 -192649541 - Charlie1 DNA MER1_type -2 2759 2619 * 791 219 37 66 chr3 34875020 34875262 -192649316 - Charlie1 DNA MER1_type -2522 239 5 258 257 54 68 chr3 34875664 34875894 -192648684 - L1MEd LINE L1 -4862 1257 1111 378 283 0 8 chr3 34876931 34877051 -192647527 + MER94 DNA DNA 10 128 -6 507 192 192 6 chr3 34877734 34877886 -192646692 + MER5A DNA MER1_type 4 188 -1 1592 129 0 9 chr3 34877895 34878120 -192646458 + AluSx SINE Alu 1 223 -89 1561 245 78 41 chr3 34878975 34879530 -192645048 - MER119 DNA MER1_type -8 575 1 772 289 44 21 chr3 34879543 34879892 -192644686 - LTR16A1 LTR ERVL -2 455 127 210 191 24 24 chr3 34880857 34880899 -192643679 - MIR SINE MIR -138 70 29 1655 248 85 10 chr3 34880903 34881420 -192643158 + L2 LINE L2 2338 2893 -421 188 65 0 32 chr3 34882130 34882161 -192642417 + (CACCC)n Simple_repeat Simple_repeat 3 32 0 21 0 0 0 chr3 34883025 34883046 -192641532 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 34883188 34883208 -192641370 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 186 133 0 0 chr3 34883437 34883467 -192641111 + (CATA)n Simple_repeat Simple_repeat 2 31 0 225 328 141 8 chr3 34883560 34883688 -192640890 - MIR3 SINE MIR -61 147 3 1068 282 102 21 chr3 34884700 34885348 -192639230 - L2 LINE L2 -16 3297 2572 258 200 0 18 chr3 34885378 34885433 -192639145 - L2 LINE L2 -937 2377 2324 2385 94 51 14 chr3 34885494 34885845 -192638733 + THE1B LTR MaLR 1 364 0 456 188 46 11 chr3 34886410 34886651 -192637927 + MER2 DNA MER2_type 2 345 0 354 240 74 25 chr3 34887006 34887127 -192637451 + L1ME4a LINE L1 5968 6094 -27 194 326 22 11 chr3 34887222 34887314 -192637264 - L2 LINE L2 -289 2983 2891 2350 103 0 7 chr3 34887460 34887770 -192636808 + AluSx SINE Alu 1 308 -4 566 248 89 32 chr3 34889690 34890061 -192634517 + L1M4 LINE L1 2955 3346 -2800 2211 99 7 0 chr3 34890061 34890355 -192634223 + AluSx SINE Alu 1 296 -16 311 307 100 32 chr3 34892744 34893083 -192631495 - MLT1J LTR MaLR -75 436 75 1064 186 201 21 chr3 34893333 34893710 -192630868 - MER31B LTR ERV1 -4 510 1 21 0 0 0 chr3 34894013 34894034 -192630544 + AT_rich Low_complexity Low_complexity 1 21 0 5715 243 78 20 chr3 34894805 34895000 -192629578 + L1MA4A LINE L1 119 301 -6548 2248 123 0 0 chr3 34895000 34895302 -192629276 + AluSq SINE Alu 1 302 -11 5715 243 78 20 chr3 34895302 34896793 -192627785 + L1MA4A LINE L1 301 1909 -4940 2249 110 0 3 chr3 34896793 34897093 -192627485 + AluSx SINE Alu 1 299 -13 5715 243 78 20 chr3 34897093 34897116 -192627462 + L1MA4A LINE L1 1909 1929 -4920 * 11733 174 32 33 chr3 34897094 34899681 -192624897 + L1MA4A LINE L1 3190 5775 -1073 6586 65 20 0 chr3 34899681 34900611 -192623967 - L1PA6 LINE L1 0 6154 5203 11733 174 32 33 chr3 34900611 34900870 -192623708 + L1MA4A LINE L1 5775 6033 -815 828 128 0 0 chr3 34900867 34901000 -192623578 - L1PA8 LINE L1 -938 5208 5076 * 6877 70 1 13 chr3 34901000 34901235 -192623343 + L1PA8 LINE L1 5206 5442 -730 2303 114 0 0 chr3 34901235 34901533 -192623045 + AluSg SINE Alu 1 298 -12 6877 70 1 13 chr3 34901533 34902270 -192622308 + L1PA8 LINE L1 5442 6168 -4 3960 140 17 3 chr3 34902271 34902964 -192621614 + L1MA4A LINE L1 6022 6724 -281 22 0 0 0 chr3 34906765 34906787 -192617791 + AT_rich Low_complexity Low_complexity 1 22 0 490 261 36 12 chr3 34907815 34907980 -192616598 + L2 LINE L2 3096 3264 -49 303 306 0 0 chr3 34907982 34908067 -192616511 - MER5B DNA MER1_type -93 85 1 2303 84 44 0 chr3 34908655 34908952 -192615626 + AluSp SINE Alu 1 310 -3 751 269 57 0 chr3 34909201 34909394 -192615184 + MIR SINE MIR 9 212 -50 282 259 49 12 chr3 34909379 34909460 -192615118 - MIR SINE MIR -13 249 166 * 182 413 130 0 chr3 34910054 34910284 -192614294 + L2 LINE L2 3030 3289 -24 368 339 24 8 chr3 34910370 34910494 -192614084 - L2 LINE L2 0 3313 3188 550 291 195 5 chr3 34912791 34913001 -192611577 + MIR SINE MIR 13 262 0 286 258 0 45 chr3 34913145 34913211 -192611367 + MIR SINE MIR 20 82 -180 201 125 50 0 chr3 34915130 34915170 -192609408 - L2 LINE L2 -2 3311 3270 1513 268 153 52 chr3 34916592 34917320 -192607258 + L2 LINE L2 2090 2962 -351 1086 218 20 96 chr3 34917320 34917652 -192606926 + MLT1A1 LTR MaLR 1 300 -65 1508 216 7 10 chr3 34917652 34917943 -192606635 + AluJo SINE Alu 2 291 -21 1086 218 20 96 chr3 34917943 34918004 -192606574 + MLT1A1 LTR MaLR 300 364 -1 1513 268 153 52 chr3 34918004 34918355 -192606223 + L2 LINE L2 2962 3276 -37 321 164 194 0 chr3 34918911 34918978 -192605600 - MER5C DNA MER1_type -2 322 243 383 202 18 79 chr3 34919037 34919151 -192605427 - MER5C DNA MER1_type -200 124 18 2212 112 10 3 chr3 34920344 34920640 -192603938 + AluSx SINE Alu 1 298 -14 645 174 14 7 chr3 34921086 34921224 -192603354 + L1MD3 LINE L1 7840 7978 -17 266 231 103 13 chr3 34921861 34921939 -192602639 - MIR3 SINE MIR -43 165 81 196 280 0 20 chr3 34922422 34922472 -192602106 - L2 LINE L2 -15 3257 3209 351 173 160 0 chr3 34922976 34923051 -192601527 - L2 LINE L2 0 3313 3227 5499 121 4 4 chr3 34924591 34925975 -192598603 - L1P4 LINE L1 -352 5822 4441 235 293 38 38 chr3 34926118 34926224 -192598354 - MIR SINE MIR 0 262 157 198 294 0 0 chr3 34926761 34926812 -192597766 + MIR SINE MIR 211 261 -1 180 111 0 0 chr3 34926851 34926878 -192597700 + (TAG)n Simple_repeat Simple_repeat 3 29 0 300 96 19 19 chr3 34927066 34927118 -192597460 - MIR SINE MIR -121 141 90 613 308 13 36 chr3 34927859 34928083 -192596495 + MIR SINE MIR 18 236 -26 2097 119 0 35 chr3 34929655 34929965 -192594613 + AluSg SINE Alu 1 299 -11 1950 223 85 31 chr3 34930003 34930554 -192594024 + MLT1E LTR MaLR 2 582 -11 197 204 82 0 chr3 34930570 34930619 -192593959 - L2 LINE L2 -1 3271 3219 1824 143 11 0 chr3 34931257 34931530 -192593048 - AluSx SINE Alu -30 282 7 1548 105 5 5 chr3 34931714 34931923 -192592655 + AluSx SINE Alu 1 209 -103 661 183 108 0 chr3 34931923 34932043 -192592535 + AluJo/FRAM SINE Alu 148 280 -32 2701 235 52 18 chr3 34932239 34933055 -192591523 + L1ME2 LINE L1 5317 6169 -9 2208 218 104 63 chr3 34933063 34934088 -192590490 + L1MC5 LINE L1 6607 7678 -283 427 248 13 19 chr3 34934114 34934271 -192590307 + L1MC5 LINE L1 7756 7911 -50 2321 36 39 42 chr3 34934398 34934706 -192589872 - AluY SINE Alu -4 307 1 739 203 58 76 chr3 34935892 34936014 -192588564 + ORSL DNA AcHobo 1 124 -151 2384 74 0 0 chr3 34936014 34936312 -192588266 + AluY SINE Alu 1 298 -13 186 43 0 0 chr3 34936312 34936335 -192588243 + (TA)n Simple_repeat Simple_repeat 2 24 0 739 203 58 76 chr3 34936335 34936487 -192588091 + ORSL DNA AcHobo 122 271 -4 28 48 0 0 chr3 34936933 34936975 -192587603 + GC_rich Low_complexity Low_complexity 1 42 0 326 119 48 0 chr3 34937047 34937131 -192587447 + (CCG)n Simple_repeat Simple_repeat 3 90 0 590 147 42 0 chr3 34938601 34938696 -192585882 + AluS SINE Alu 1 99 -214 1639 113 34 8 chr3 34938696 34938935 -192585643 + AluSx SINE Alu 54 298 -14 1068 90 8 0 chr3 34940033 34940167 -192584411 + AluY SINE Alu 1 135 -176 202 180 60 20 chr3 34940168 34940268 -192584310 + A-rich Low_complexity Low_complexity 1 104 0 557 163 96 22 chr3 34941583 34941648 -192582930 - MER69 DNA AcHobo 0 2526 2467 2123 120 3 22 chr3 34941648 34941938 -192582640 + AluSx SINE Alu 1 288 -24 244 0 0 0 chr3 34941938 34941965 -192582613 + (CAAA)n Simple_repeat Simple_repeat 2 56 0 2123 120 3 22 chr3 34941965 34941990 -192582588 + AluSx SINE Alu 288 312 0 557 163 96 22 chr3 34941990 34942059 -192582519 - MER69 DNA AcHobo -59 2467 2382 313 217 0 0 chr3 34942212 34942272 -192582306 - MER69 DNA AcHobo -2465 61 2 1875 151 10 10 chr3 34942543 34942835 -192581743 + AluSx SINE Alu 1 292 -20 254 273 0 0 chr3 34942863 34942929 -192581649 - L1ME1 LINE L1 -50 6116 6051 22 0 0 0 chr3 34942974 34942996 -192581582 + AT_rich Low_complexity Low_complexity 1 22 0 312 27 0 0 chr3 34943203 34943240 -192581338 + (TG)n Simple_repeat Simple_repeat 2 38 0 2307 123 27 6 chr3 34943262 34943628 -192580950 + THE1C LTR MaLR 2 375 0 809 301 15 4 chr3 34944108 34944367 -192580211 + MIR SINE MIR 1 262 0 2253 102 3 10 chr3 34944841 34945145 -192579433 + AluSx SINE Alu 1 302 -10 1133 136 27 0 chr3 34945829 34946013 -192578565 - MER57B LTR ERV1 0 434 246 2184 120 3 0 chr3 34946383 34946691 -192577887 + AluSx SINE Alu 1 309 -3 1841 153 27 17 chr3 34946904 34947199 -192577379 + AluJo SINE Alu 2 299 -13 25 65 0 0 chr3 34947244 34947290 -192577288 + AT_rich Low_complexity Low_complexity 1 46 0 2379 89 0 10 chr3 34947349 34947663 -192576915 + AluSx SINE Alu 1 311 -1 359 327 20 20 chr3 34948698 34948848 -192575730 - L2 LINE L2 0 3272 3123 621 251 112 18 chr3 34949110 34949333 -192575245 - MIR SINE MIR -3 259 16 244 255 0 0 chr3 34949676 34949727 -192574851 + L2 LINE L2 3219 3269 -3 454 273 70 0 chr3 34949736 34949864 -192574714 - LTR16C LTR ERVL 0 491 355 1709 182 20 0 chr3 34949864 34950161 -192574417 + AluJb SINE Alu 1 303 -9 599 259 184 9 chr3 34950164 34950392 -192574186 - MER57B LTR ERV1 -165 269 2 241 246 0 31 chr3 34950578 34950643 -192573935 + GA-rich Low_complexity Low_complexity 3 65 0 2313 76 31 0 chr3 34951529 34951820 -192572758 + AluY SINE Alu 1 300 -11 426 306 126 10 chr3 34952502 34952525 -192572053 + MIR SINE MIR 1 20 -242 1807 172 47 0 chr3 34952525 34952821 -192571757 + AluJo SINE Alu 1 310 -2 426 306 126 10 chr3 34952821 34952996 -192571582 + MIR SINE MIR 20 222 -40 653 206 22 15 chr3 34953519 34953655 -192570923 - FLAM_A SINE Alu 0 142 6 355 217 9 85 chr3 34953674 34953780 -192570798 - L1ME LINE L1 -443 5719 5622 256 310 0 0 chr3 34953829 34953900 -192570678 + L2 LINE L2 3188 3258 -55 1793 189 46 9 chr3 34953901 34954250 -192570328 - MLT1A2 LTR MaLR -7 367 6 * 2324 180 27 56 chr3 34954247 34954731 -192569847 + MER82 DNA MER2_type 162 631 -22 262 274 0 0 chr3 34954932 34954994 -192569584 + L2 LINE L2 3201 3262 -10 291 273 68 15 chr3 34956082 34956214 -192568364 + L1ME4a LINE L1 5966 6104 -17 2137 208 223 52 chr3 34956345 34957129 -192567449 + L1MC3 LINE L1 6176 7093 -692 409 245 0 32 chr3 34957129 34957223 -192567355 + MLT1F1 LTR MaLR 35 125 -442 383 220 44 11 chr3 34957253 34957344 -192567234 - MER5A DNA MER1_type -95 94 1 381 216 6 16 chr3 34957610 34957703 -192566875 - MER5A DNA MER1_type 0 189 86 966 208 47 24 chr3 34957706 34957961 -192566617 - MIR SINE MIR 0 262 2 828 285 162 15 chr3 34957983 34958323 -192566255 - LTR16C LTR ERVL -3 488 99 1686 179 0 38 chr3 34958419 34958732 -192565846 - AluJo SINE Alu -11 301 1 1142 181 177 12 chr3 34958862 34959111 -192565467 + AluSc SINE Alu 1 290 -9 2311 111 0 0 chr3 34959182 34959479 -192565099 + AluSx SINE Alu 1 297 -15 25 51 0 0 chr3 34960417 34960456 -192564122 + AT_rich Low_complexity Low_complexity 1 39 0 1709 168 45 0 chr3 34960461 34960747 -192563831 + AluJo SINE Alu 3 301 -11 21 36 0 0 chr3 34960975 34961003 -192563575 + AT_rich Low_complexity Low_complexity 1 28 0 262 247 12 12 chr3 34961143 34961224 -192563354 + L2 LINE L2 3198 3278 -35 21 36 0 0 chr3 34962848 34962876 -192561702 + AT_rich Low_complexity Low_complexity 1 28 0 1283 187 0 123 chr3 34963523 34963659 -192560919 + AluSx SINE Alu 3 73 -239 1687 127 4 4 chr3 34963659 34963896 -192560682 + AluSg SINE Alu 61 297 -13 1283 187 0 123 chr3 34963896 34964101 -192560477 + AluSx SINE Alu 73 302 -10 1578 152 3 87 chr3 34964561 34964897 -192559681 - AluJo SINE Alu 0 310 1 559 226 91 178 chr3 34965413 34965578 -192559000 - Charlie8 DNA MER1_type -1892 525 347 2115 136 13 3 chr3 34965578 34965880 -192558698 - AluSx SINE Alu -7 305 1 559 226 91 178 chr3 34965880 34966286 -192558292 - Charlie8 DNA MER1_type -2070 347 4 1288 187 11 41 chr3 34967263 34967531 -192557047 - AluJb SINE Alu -52 260 1 2096 121 0 3 chr3 34967540 34967851 -192556727 - AluSx SINE Alu 0 310 1 560 225 33 7 chr3 34967855 34968006 -192556572 + L1M4 LINE L1 4849 5003 -1143 1260 111 82 19 chr3 34968007 34968215 -192556363 + AluSq SINE Alu 85 305 -8 1942 160 0 10 chr3 34968352 34968658 -192555920 - AluSx SINE Alu -9 303 1 881 139 13 6 chr3 34968661 34968819 -192555759 - L1MA5 LINE L1 0 6300 6142 1387 151 37 4 chr3 34968883 34969157 -192555421 - L1MA5 LINE L1 -23 6145 5875 202 336 16 8 chr3 34969222 34969350 -192555228 + GA-rich Low_complexity Low_complexity 1 129 0 2152 131 0 16 chr3 34971422 34971734 -192552844 + AluSq SINE Alu 1 307 -6 2353 104 7 0 chr3 34971735 34972043 -192552535 + AluSq SINE Alu 1 310 -3 384 247 31 12 chr3 34972145 34972307 -192552271 + (TA)n Simple_repeat Simple_repeat 2 166 0 2089 113 51 0 chr3 34972632 34972925 -192551653 - AluSg SINE Alu -2 308 1 607 200 0 0 chr3 34973069 34973169 -192551409 - AluJ/FLAM SINE Alu -211 101 2 261 314 14 0 chr3 34973201 34973271 -192551307 + MLT1J LTR MaLR 110 180 -331 * 284 242 32 0 chr3 34973241 34973303 -192551275 + MLT1L LTR MaLR 215 278 -337 231 265 29 0 chr3 34973674 34973742 -192550836 + GA-rich Low_complexity Low_complexity 3 72 0 4039 140 13 13 chr3 34973813 34973997 -192550581 - MER41B LTR ERV1 0 635 452 2122 110 7 26 chr3 34973997 34974306 -192550272 - AluSx SINE Alu -9 303 1 4039 140 13 13 chr3 34974306 34974756 -192549822 - MER41B LTR ERV1 -182 453 1 2002 160 0 3 chr3 34974961 34975274 -192549304 + AluJb SINE Alu 1 312 0 248 212 52 40 chr3 34975578 34975701 -192548877 + LTR16C LTR ERVL 333 490 -1 1316 184 98 133 chr3 34976951 34977031 -192547547 - L1ME2 LINE L1 -9 6155 6074 2128 120 0 22 chr3 34977031 34977348 -192547230 + AluSx SINE Alu 1 310 -2 1316 184 98 133 chr3 34977348 34977574 -192547004 - L1ME2 LINE L1 -90 6074 5872 2154 125 0 0 chr3 34977574 34977863 -192546715 - AluSg SINE Alu -21 289 1 1316 184 98 133 chr3 34977863 34978083 -192546495 - L1ME2 LINE L1 -292 5872 5646 1380 168 111 68 chr3 34978107 34978531 -192546047 + LTR7 LTR ERV1 1 442 -8 2296 166 60 56 chr3 34978539 34979400 -192545178 + HERVH LTR ERV1 1 1182 -6531 1466 157 4 25 chr3 34979398 34979672 -192544906 + HERVH LTR ERV1 2728 2995 -4718 * 3570 142 9 8 chr3 34979651 34980898 -192543680 + HERVH LTR ERV1 3140 5286 -1805 1628 153 10 37 chr3 34981201 34981495 -192543083 - AluJb SINE Alu -18 294 9 248 205 0 58 chr3 34981871 34982096 -192542482 + AluJo SINE Alu 2 291 -11 436 225 62 62 chr3 34982834 34983012 -192541566 + MIR SINE MIR 32 209 -53 2063 130 0 3 chr3 34983201 34983485 -192541093 + AluSx SINE Alu 1 283 -29 1946 124 13 23 chr3 34983529 34983828 -192540750 + AluSx SINE Alu 1 296 -16 1249 73 11 0 chr3 34983948 34984126 -192540452 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 837 141 0 37 chr3 34984144 34984279 -192540299 + AluSq/x SINE Alu 2 131 -182 949 104 0 0 chr3 34984285 34984419 -192540159 - AluSg/x SINE Alu -2 308 175 554 178 28 188 chr3 34984430 34984643 -192539935 - MER74A LTR ERVL -350 208 30 2036 165 8 61 chr3 34984689 34985084 -192539494 - MLT1B LTR MaLR 0 390 17 1932 112 76 0 chr3 34985119 34985396 -192539182 + AluSp SINE Alu 1 298 -15 2060 122 14 0 chr3 34985563 34985871 -192538707 + AluSx SINE Alu 1 312 0 330 87 0 0 chr3 34986187 34986233 -192538345 + (CA)n Simple_repeat Simple_repeat 2 47 0 2158 110 17 3 chr3 34986535 34986826 -192537752 - AluSq SINE Alu -18 295 1 277 269 25 42 chr3 34986900 34987019 -192537559 - LTR67 LTR ERVL 0 557 441 1869 140 63 3 chr3 34987662 34987948 -192536630 - AluJb SINE Alu -9 303 1 1751 141 8 4 chr3 34987959 34988221 -192536357 - AluSx SINE Alu -17 295 33 449 129 0 0 chr3 34988221 34988283 -192536295 - AluS SINE Alu -246 67 6 423 248 35 35 chr3 34988299 34988412 -192536166 + MLT1J2 LTR MaLR 87 199 -251 2318 112 0 3 chr3 34988414 34988727 -192535851 - AluSx SINE Alu 0 312 1 1240 124 0 0 chr3 34988737 34988914 -192535664 - AluSq SINE Alu 0 313 137 2287 111 3 0 chr3 34988934 34989231 -192535347 - AluSq SINE Alu -15 298 1 367 360 37 0 chr3 34989388 34989524 -192535054 + MIR3 SINE MIR 14 154 -54 243 227 91 0 chr3 34990289 34990355 -192534223 - L2 LINE L2 -1 3312 3241 1182 122 6 0 chr3 34990402 34990566 -192534012 - AluSg/x SINE Alu -9 303 139 265 162 14 14 chr3 34992381 34992455 -192532123 + CT-rich Low_complexity Low_complexity 3 76 0 2276 105 3 7 chr3 34992531 34992826 -192531752 + AluSx SINE Alu 1 294 -18 1355 215 33 10 chr3 34992945 34993247 -192531331 + AluJo SINE Alu 3 311 -1 2310 98 0 19 chr3 34993247 34993562 -192531016 + AluY SINE Alu 1 309 -2 2275 67 44 10 chr3 34993642 34993939 -192530639 + AluY SINE Alu 1 307 -4 1074 168 31 75 chr3 34995023 34995155 -192529423 + MER20 DNA MER1_type 1 120 -99 1520 232 118 47 chr3 34995155 34995578 -192529000 - LTR27 LTR ERV1 -1 635 157 2008 152 7 0 chr3 34995578 34995874 -192528704 + AluSp SINE Alu 1 298 -15 1520 232 118 47 chr3 34995874 34996041 -192528537 - LTR27 LTR ERV1 -479 157 3 1074 168 31 75 chr3 34996041 34996134 -192528444 + MER20 DNA MER1_type 120 216 -3 341 300 30 0 chr3 34996914 34997014 -192527564 + MIR SINE MIR 4 106 -156 23 0 0 0 chr3 34997014 34997037 -192527541 + AT_rich Low_complexity Low_complexity 1 23 0 1137 142 0 0 chr3 34997038 34997200 -192527378 - AluSg/x SINE Alu -22 288 127 184 98 244 0 chr3 34997204 34997245 -192527333 + MIR SINE MIR 93 143 -119 783 170 7 15 chr3 34997252 34997387 -192527191 - AluJo SINE Alu -177 135 2 337 214 36 12 chr3 34997759 34997843 -192526735 + LTR16A1 LTR ERVL 346 431 -26 347 224 0 0 chr3 34997843 34997910 -192526668 + MIR SINE MIR 186 252 -10 2105 114 3 7 chr3 34998402 34998691 -192525887 + AluSx SINE Alu 1 288 -24 183 344 0 16 chr3 34998912 34998973 -192525605 + L2 LINE L2 3127 3186 -86 705 175 0 8 chr3 34999278 34999398 -192525180 + FLAM_A SINE Alu 16 134 -8 226 291 116 0 chr3 34999578 34999664 -192524914 + MIR3 SINE MIR 65 160 -48 905 230 10 0 chr3 34999669 34999869 -192524709 - MER3 DNA MER1_type -5 204 3 2180 100 7 23 chr3 34999971 35000272 -192524306 + AluSx SINE Alu 1 296 -16 2209 116 39 0 chr3 35000643 35000979 -192523599 - L1PA11 LINE L1 -4 6170 5822 438 206 40 29 chr3 35001100 35001275 -192523303 + (TATAA)n Simple_repeat Simple_repeat 4 180 0 2075 111 36 16 chr3 35001402 35001708 -192522870 - AluSx SINE Alu 0 312 1 329 158 40 13 chr3 35002103 35002179 -192522399 - L1MC4 LINE L1 0 8042 7965 1863 185 25 11 chr3 35002180 35002536 -192522042 + MLT1A2 LTR MaLR 1 361 -13 621 123 0 290 chr3 35002540 35002736 -192521842 - L1MC4 LINE L1 -75 7967 7716 1832 72 5 0 chr3 35002736 35002958 -192521620 + AluSp SINE Alu 1 223 -90 260 111 0 0 chr3 35002958 35003003 -192521575 + AluSp SINE Alu 257 301 -2 621 123 0 290 chr3 35003003 35003017 -192521561 - L1MC4 LINE L1 -325 7717 7864 2344 96 0 0 chr3 35003017 35003310 -192521268 + AluSg1 SINE Alu 1 293 -16 621 123 0 290 chr3 35003310 35003450 -192521128 - L1MC4 LINE L1 -177 7865 7686 401 328 8 8 chr3 35003465 35003599 -192520979 + MIR SINE MIR 126 259 -3 724 218 163 44 chr3 35004244 35004563 -192520015 + MLT1J1 LTR MaLR 104 433 -13 231 253 40 27 chr3 35004599 35004674 -192519904 + MIR SINE MIR 37 112 -96 1711 180 7 7 chr3 35004975 35005280 -192519298 - AluJo SINE Alu -7 305 1 1661 166 254 56 chr3 35005319 35005838 -192518740 - LTR29 LTR ERV1 0 622 1 1712 143 51 11 chr3 35005881 35006178 -192518400 + AluJb SINE Alu 1 308 0 2080 136 3 0 chr3 35006291 35006577 -192518001 - AluSg SINE Alu -23 287 1 187 310 46 23 chr3 35007303 35007390 -192517188 + MIR3 SINE MIR 98 186 -22 214 328 171 26 chr3 35007563 35007944 -192516634 - L2 LINE L2 -468 2846 2411 519 214 0 10 chr3 35007982 35008080 -192516498 + AluSg/x SINE Alu 113 209 -103 1290 181 107 65 chr3 35008080 35008512 -192516066 + LTR7 LTR ERV1 1 450 0 2716 136 11 24 chr3 35008512 35008977 -192515601 + HERVH LTR ERV1 1 459 -7254 292 221 91 28 chr3 35008959 35009161 -192515417 + HERVH LTR ERV1 346 620 -7093 * 10527 103 9 32 chr3 35009148 35010747 -192513831 + HERVH LTR ERV1 756 2317 -5396 2286 114 3 0 chr3 35010972 35011280 -192513298 - AluSc SINE Alu 0 309 1 1563 180 7 20 chr3 35011846 35012141 -192512437 - AluJo SINE Alu -21 291 1 2191 112 0 3 chr3 35012244 35012540 -192512038 + AluSx SINE Alu 1 295 -17 186 43 0 0 chr3 35012899 35012922 -192511656 + (GA)n Simple_repeat Simple_repeat 2 24 0 367 219 104 0 chr3 35013064 35013160 -192511418 + MER53 DNA DNA 2 107 -82 227 354 107 41 chr3 35013215 35013792 -192510786 - L2 LINE L2 -2 3270 2656 310 104 0 0 chr3 35013899 35013947 -192510631 - Alu SINE Alu -17 285 238 525 146 146 0 chr3 35013949 35014038 -192510540 + AluJo SINE Alu 72 173 -139 * 595 50 25 12 chr3 35014035 35014115 -192510463 + AluSg/x SINE Alu 218 298 -11 2252 118 0 3 chr3 35014118 35014414 -192510164 + AluSq SINE Alu 1 295 -18 21 36 0 0 chr3 35014799 35014827 -192509751 + AT_rich Low_complexity Low_complexity 1 28 0 502 154 13 0 chr3 35014834 35014912 -192509666 + MER51A LTR ERV1 469 547 -87 432 278 120 0 chr3 35014923 35015031 -192509547 - AluSq/x SINE Alu -181 121 1 1540 165 0 0 chr3 35015056 35015286 -192509292 + AluJb SINE Alu 1 230 -82 189 107 0 0 chr3 35015302 35015330 -192509248 + (A)n Simple_repeat Simple_repeat 1 28 0 400 243 98 35 chr3 35015338 35015511 -192509067 - MIR SINE MIR -32 230 47 785 71 0 0 chr3 35015803 35015901 -192508677 - HY3 scRNA scRNA -2 99 2 448 363 50 40 chr3 35015966 35016310 -192508268 + L3 LINE CR1 265 615 -962 1834 172 0 13 chr3 35016310 35016612 -192507966 - AluJb SINE Alu -11 301 4 448 363 50 40 chr3 35016612 35016666 -192507912 + L3 LINE CR1 615 667 -910 368 275 63 7 chr3 35016680 35016822 -192507756 + L2 LINE L2 2267 2416 -898 350 301 63 121 chr3 35016831 35017260 -192507318 - MLT1K LTR MaLR -5 583 180 1347 160 44 0 chr3 35017389 35017614 -192506964 - AluJo SINE Alu -8 304 70 910 201 115 63 chr3 35017614 35017997 -192506581 - LTR7 LTR ERV1 0 450 48 5879 131 36 32 chr3 35018133 35019508 -192505070 - L1MA4 LINE L1 -2 6298 4900 226 262 16 0 chr3 35019588 35019649 -192504929 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 311 0 0 25 chr3 35020440 35020480 -192504098 + (TG)n Simple_repeat Simple_repeat 2 40 0 407 258 10 93 chr3 35020935 35021129 -192503449 - MER5B DNA MER1_type 0 178 1 884 203 7 0 chr3 35021139 35021292 -192503286 + FRAM SINE Alu 4 157 -19 2406 87 7 0 chr3 35021858 35022168 -192502410 - AluSp SINE Alu -1 312 1 2287 123 0 0 chr3 35023297 35023607 -192500971 + AluSx SINE Alu 1 310 -2 245 339 46 23 chr3 35024359 35024533 -192500045 - MIR3 SINE MIR -1 207 30 306 254 51 43 chr3 35024601 35024739 -192499839 + L2 LINE L2 2934 3072 -200 1951 77 168 34 chr3 35025301 35025614 -192498964 - MER39B LTR ERV1 -244 409 43 222 37 0 0 chr3 35025614 35025641 -192498937 + (GA)n Simple_repeat Simple_repeat 1 27 0 1951 77 168 34 chr3 35025641 35025678 -192498900 - MER39B LTR ERV1 -610 43 12 218 200 40 0 chr3 35026044 35026094 -192498484 + T-rich Low_complexity Low_complexity 5 56 0 1965 116 3 21 chr3 35026113 35026398 -192498180 - AluSx SINE Alu -32 280 1 1372 140 8 29 chr3 35026399 35026642 -192497936 + MER39B LTR ERV1 413 650 -3 2298 96 0 23 chr3 35026700 35027001 -192497577 + AluSg SINE Alu 1 294 -16 2095 123 7 3 chr3 35027026 35027335 -192497243 + AluSg SINE Alu 1 310 0 238 262 74 66 chr3 35027352 35027474 -192497104 - MLT1L LTR MaLR -348 267 145 435 242 128 40 chr3 35027694 35027843 -192496735 - MIR SINE MIR -54 208 47 180 286 0 48 chr3 35027942 35028005 -192496573 - L2 LINE L2 -4 3268 3209 247 300 0 0 chr3 35028381 35028451 -192496127 - MER117 DNA MER1_type -50 147 78 1676 151 88 18 chr3 35028511 35028693 -192495885 + AluJb SINE Alu 1 169 -143 2633 187 57 88 chr3 35028693 35028872 -192495706 - LTR8A LTR ERV1 0 727 544 1790 105 93 0 chr3 35028872 35029168 -192495410 - AluSg SINE Alu 0 320 1 2633 187 57 88 chr3 35029168 35029197 -192495381 - LTR8A LTR ERV1 -183 544 516 2236 110 3 0 chr3 35029197 35029489 -192495089 - AluSq SINE Alu -20 293 1 2633 187 57 88 chr3 35029489 35030028 -192494550 - LTR8A LTR ERV1 -211 516 1 1676 151 88 18 chr3 35030028 35030130 -192494448 + AluJb SINE Alu 169 305 -7 526 336 40 5 chr3 35030211 35030434 -192494144 - MIR SINE MIR -31 231 1 751 122 9 0 chr3 35030836 35030943 -192493635 - AluSg/x SINE Alu -11 298 191 2345 112 0 0 chr3 35031139 35031443 -192493135 - AluSg1 SINE Alu -5 304 1 905 211 26 5 chr3 35031489 35031679 -192492899 + L1ME LINE L1 5464 5657 -507 1808 161 3 14 chr3 35031679 35031965 -192492613 + AluJo SINE Alu 1 283 -29 1321 162 92 123 chr3 35031966 35032422 -192492156 - LTR7 LTR ERV1 -8 442 1 3078 81 7 11 chr3 35032422 35032855 -192491723 - HERVH LTR ERV1 0 7713 7283 3468 132 0 8 chr3 35032858 35033351 -192491227 - HERVH LTR ERV1 -2697 5016 4528 251 289 54 66 chr3 35033480 35033646 -192490932 - L3 LINE CR1 -267 1310 1147 187 250 0 0 chr3 35034205 35034249 -192490329 - MIR SINE MIR -60 148 105 924 289 124 36 chr3 35034304 35034517 -192490061 + MLT1K LTR MaLR 10 203 -385 180 0 0 0 chr3 35034517 35034537 -192490041 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 924 289 124 36 chr3 35034537 35034548 -192490030 + MLT1K LTR MaLR 203 212 -376 2062 124 28 0 chr3 35034548 35034830 -192489748 - AluSg SINE Alu -20 290 1 924 289 124 36 chr3 35034830 35035071 -192489507 + MLT1K LTR MaLR 212 517 -71 231 288 27 0 chr3 35035081 35035154 -192489424 + CT-rich Low_complexity Low_complexity 5 79 0 2314 176 24 12 chr3 35035337 35035758 -192488820 + MSTB LTR MaLR 1 426 0 2218 113 3 0 chr3 35035810 35036103 -192488475 - AluSg SINE Alu -16 294 1 431 271 16 39 chr3 35036112 35036241 -192488337 - MIR SINE MIR -67 141 16 298 206 55 27 chr3 35036309 35036382 -192488196 + MIR3 SINE MIR 106 180 -28 183 129 0 0 chr3 35036486 35036517 -192488061 + (CA)n Simple_repeat Simple_repeat 1 31 0 2217 109 0 10 chr3 35036969 35037262 -192487316 - AluSg1 SINE Alu -18 291 2 28 29 0 0 chr3 35037262 35037297 -192487281 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr3 35037320 35037341 -192487237 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1923 160 0 0 chr3 35037344 35037631 -192486947 - AluSx SINE Alu -25 287 1 1628 204 83 39 chr3 35037829 35038240 -192486338 - MER21A LTR ERV1 0 931 503 1241 181 18 9 chr3 35038313 35038534 -192486044 - MER21B LTR ERV1 -638 225 3 23 68 0 0 chr3 35038930 35038974 -192485604 + AT_rich Low_complexity Low_complexity 1 44 0 1604 101 18 0 chr3 35039012 35039231 -192485347 - AluSg1 SINE Alu -86 223 1 952 204 81 50 chr3 35039267 35039332 -192485246 - MSTD LTR MaLR -7 389 327 2254 107 3 13 chr3 35039332 35039630 -192484948 + AluSx SINE Alu 1 295 -17 952 204 81 50 chr3 35039630 35039824 -192484754 - MSTD LTR MaLR -69 327 122 848 158 0 0 chr3 35039824 35039951 -192484627 + FLAM_C SINE Alu 1 127 -16 39 60 0 0 chr3 35039953 35040020 -192484558 + AT_rich Low_complexity Low_complexity 1 67 0 1468 193 0 63 chr3 35040021 35040352 -192484226 + AluJo SINE Alu 1 312 0 653 130 20 0 chr3 35040358 35040458 -192484120 - MSTD LTR MaLR -294 102 1 2266 128 0 3 chr3 35041319 35041632 -192482946 + AluSx SINE Alu 1 312 0 29 47 0 0 chr3 35041752 35041795 -192482783 + AT_rich Low_complexity Low_complexity 1 43 0 2877 144 45 19 chr3 35041795 35042231 -192482347 + L1MC2 LINE L1 5818 6270 -74 2345 98 0 10 chr3 35042231 35042537 -192482041 - AluSx SINE Alu -9 303 1 2877 144 45 19 chr3 35042537 35042612 -192481966 + L1MC2 LINE L1 6270 6342 -2 1943 115 0 77 chr3 35042932 35043244 -192481334 - AluSx SINE Alu -24 288 1 2384 102 0 3 chr3 35043270 35043583 -192480995 - AluSq SINE Alu -1 312 1 22 0 0 0 chr3 35044107 35044129 -192480449 + AT_rich Low_complexity Low_complexity 1 22 0 1617 183 74 0 chr3 35044129 35044414 -192480164 - AluJb SINE Alu -6 306 1 649 219 8 0 chr3 35044479 35044602 -192479976 - FLAM_C SINE Alu -19 124 1 429 223 45 0 chr3 35044609 35044721 -192479857 - L1M4 LINE L1 -3476 4089 3973 732 156 33 0 chr3 35044723 35044845 -192479733 + AluJo/FLAM SINE Alu 2 127 -175 2005 121 11 4 chr3 35044848 35045169 -192479409 + AluSq SINE Alu 1 323 0 1090 113 7 0 chr3 35045173 35045323 -192479255 + AluSq/x SINE Alu 1 151 -161 24 0 0 0 chr3 35045339 35045363 -192479215 + AT_rich Low_complexity Low_complexity 1 24 0 633 229 30 3 chr3 35045363 35045563 -192479015 - L1M4 LINE L1 -3945 3620 3419 824 178 0 0 chr3 35045720 35045849 -192478729 + FLAM_C SINE Alu 2 130 -3 2290 107 3 0 chr3 35045854 35046162 -192478416 + AluSp SINE Alu 1 309 -4 2161 142 3 0 chr3 35046278 35046587 -192477991 + AluSq SINE Alu 1 310 -3 2222 78 3 20 chr3 35046588 35046883 -192477695 + AluSp SINE Alu 1 290 -23 1131 309 109 5 chr3 35046883 35047488 -192477090 - L2 LINE L2 -25 3288 2627 2086 250 45 24 chr3 35047518 35048050 -192476528 + MLT1E LTR MaLR 51 593 0 755 253 39 0 chr3 35048050 35048232 -192476346 - L2 LINE L2 -678 2636 2448 2207 106 3 0 chr3 35048307 35048600 -192475978 + AluSp SINE Alu 1 294 -19 246 150 50 50 chr3 35048848 35048908 -192475670 + LTR32 LTR ERVL 320 379 -92 2179 94 7 10 chr3 35048918 35049225 -192475353 + AluSx SINE Alu 1 306 -6 240 234 13 39 chr3 35049295 35049372 -192475206 + GA-rich Low_complexity Low_complexity 1 75 0 744 125 0 76 chr3 35049424 35049568 -192475010 + FLAM_C SINE Alu 11 143 0 225 119 0 0 chr3 35049759 35049801 -192474777 + (TG)n Simple_repeat Simple_repeat 2 43 0 2275 98 3 3 chr3 35049824 35050130 -192474448 + AluSq SINE Alu 1 306 -7 1194 186 55 122 chr3 35050190 35050381 -192474197 + MLT2C2 LTR ERVL 52 254 -210 2253 88 0 7 chr3 35050381 35050689 -192473889 + AluSg SINE Alu 1 306 0 1194 186 55 122 chr3 35050689 35050889 -192473689 + MLT2C2 LTR ERVL 254 415 -49 450 53 0 0 chr3 35050889 35050946 -192473632 + (CA)n Simple_repeat Simple_repeat 1 57 0 1194 186 55 122 chr3 35050946 35050988 -192473590 + MLT2C2 LTR ERVL 415 458 -6 326 245 0 0 chr3 35050996 35051049 -192473529 - MER45 DNA AcHobo -900 53 1 181 235 0 111 chr3 35051470 35051551 -192473027 - L2 LINE L2 -106 3207 3136 1798 176 6 39 chr3 35051552 35051916 -192472662 + MLT1A1 LTR MaLR 1 352 -13 422 315 25 31 chr3 35051934 35052096 -192472482 - L2 LINE L2 -303 3010 2850 1932 95 0 0 chr3 35052098 35052339 -192472239 + AluSx SINE Alu 2 242 -70 221 0 0 33 chr3 35052353 35052383 -192472195 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr3 35052420 35052443 -192472135 + AT_rich Low_complexity Low_complexity 1 23 0 423 290 112 35 chr3 35052568 35052737 -192471841 + MIR SINE MIR 81 262 0 207 241 19 0 chr3 35052745 35052799 -192471779 + (TTA)n Simple_repeat Simple_repeat 2 56 0 342 0 0 0 chr3 35052896 35052934 -192471644 + (TG)n Simple_repeat Simple_repeat 1 38 0 2000 110 26 0 chr3 35052934 35053206 -192471372 - AluSx SINE Alu -33 279 1 1701 169 3 34 chr3 35053330 35053626 -192470952 + AluJo SINE Alu 9 295 -17 1952 118 42 7 chr3 35053728 35054017 -192470561 - AluSc SINE Alu -10 299 1 372 70 35 8 chr3 35054018 35054086 -192470492 - Alu SINE Alu 0 300 243 586 147 0 0 chr3 35054189 35054284 -192470294 + L1MA5 LINE L1 6064 6158 -142 841 140 13 6 chr3 35054346 35054503 -192470075 + L1MA5 LINE L1 6143 6300 0 1971 151 0 10 chr3 35054506 35054805 -192469773 + AluSx SINE Alu 1 296 -16 509 253 0 35 chr3 35054805 35054979 -192469599 - L1M4 LINE L1 -980 5166 4999 1280 124 6 0 chr3 35054984 35055162 -192469416 - AluSg/x SINE Alu -16 296 118 1494 248 14 6 chr3 35055465 35055816 -192468762 + LTR16A LTR ERVL 92 445 -5 318 306 124 61 chr3 35056798 35057242 -192467336 + L2 LINE L2 2465 2936 -378 257 373 75 63 chr3 35057269 35057537 -192467041 + L2 LINE L2 3002 3272 0 228 331 57 24 chr3 35057973 35058097 -192466481 + MIR SINE MIR 70 197 -65 2079 97 30 20 chr3 35058255 35058430 -192466148 - AluSq SINE Alu -12 301 120 513 0 0 0 chr3 35058430 35058487 -192466091 + (TG)n Simple_repeat Simple_repeat 2 58 0 2079 97 30 20 chr3 35058487 35058609 -192465969 - AluSq SINE Alu -193 120 1 649 176 42 21 chr3 35058750 35058892 -192465686 - MIR SINE MIR -44 218 74 875 225 48 0 chr3 35058905 35059114 -192465464 - MIR SINE MIR 0 262 44 2088 96 0 11 chr3 35059679 35059960 -192464618 - AluSx SINE Alu 0 312 35 774 238 145 9 chr3 35060187 35060414 -192464164 - MIR SINE MIR -3 259 2 185 404 0 0 chr3 35060628 35060722 -192463856 + L2 LINE L2 3218 3311 -2 2196 93 10 3 chr3 35060889 35061191 -192463387 - AluSq SINE Alu -9 304 1 790 273 61 9 chr3 35061212 35061443 -192463135 - MIR SINE MIR -19 243 1 475 298 34 68 chr3 35061693 35061898 -192462680 - L2 LINE L2 0 3272 3075 267 305 123 65 chr3 35062021 35062092 -192462486 - L2 LINE L2 -556 2758 2693 2201 84 7 0 chr3 35062092 35062377 -192462201 + AluSx SINE Alu 1 287 -25 267 305 123 65 chr3 35062377 35062400 -192462178 - L2 LINE L2 -621 2693 2673 228 67 0 0 chr3 35062400 35062430 -192462148 + (TA)n Simple_repeat Simple_repeat 2 31 0 267 305 123 65 chr3 35062430 35062917 -192461661 - L2 LINE L2 -641 2673 2142 305 312 128 82 chr3 35063173 35063673 -192460905 + L1M2 LINE L1 910 1432 -5417 358 312 118 29 chr3 35064006 35064176 -192460402 + MIR3 SINE MIR 18 202 -6 184 327 64 36 chr3 35064240 35064350 -192460228 - MIR SINE MIR -116 146 34 1867 149 14 0 chr3 35064773 35065061 -192459517 + AluSx SINE Alu 1 292 -20 288 0 0 0 chr3 35065577 35065609 -192458969 + (CA)n Simple_repeat Simple_repeat 1 32 0 2331 78 7 7 chr3 35066151 35066460 -192458118 + AluY SINE Alu 1 309 -2 24 67 0 0 chr3 35067069 35067114 -192457464 + AT_rich Low_complexity Low_complexity 1 45 0 21 82 0 0 chr3 35067554 35067603 -192456975 + AT_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr3 35069791 35069815 -192454763 + AT_rich Low_complexity Low_complexity 1 24 0 33 0 0 0 chr3 35070944 35070977 -192453601 + AT_rich Low_complexity Low_complexity 1 33 0 22 70 0 0 chr3 35071095 35071138 -192453440 + AT_rich Low_complexity Low_complexity 1 43 0 2212 113 0 0 chr3 35071484 35071776 -192452802 - AluSq SINE Alu -21 292 1 736 213 0 38 chr3 35072998 35073158 -192451420 - AluSp SINE Alu -24 289 136 2340 91 0 10 chr3 35074110 35074417 -192450161 + AluSg SINE Alu 1 304 -6 1843 121 78 11 chr3 35075887 35076169 -192448409 + AluSq SINE Alu 1 301 -12 632 160 0 0 chr3 35076216 35076316 -192448262 - AluSg/x SINE Alu -25 285 186 676 249 42 0 chr3 35077962 35078127 -192446451 - MER20 DNA MER1_type 0 219 48 215 0 0 62 chr3 35078510 35078542 -192446036 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 677 239 82 96 chr3 35078587 35078942 -192445636 + MLT1J LTR MaLR 162 511 0 1730 125 90 11 chr3 35079025 35079304 -192445274 + AluSx SINE Alu 1 301 -11 21 82 0 0 chr3 35079410 35079459 -192445119 + AT_rich Low_complexity Low_complexity 1 49 0 583 250 12 55 chr3 35080036 35080200 -192444378 + MIR SINE MIR 91 247 -15 207 276 17 0 chr3 35080227 35080285 -192444293 + CT-rich Low_complexity Low_complexity 4 62 0 515 320 96 45 chr3 35080830 35081479 -192443099 - L1M4 LINE L1 -743 5403 4722 422 212 23 30 chr3 35081613 35081745 -192442833 - L1ME3 LINE L1 -1 6161 6031 463 146 52 10 chr3 35081984 35082080 -192442498 + MLT1C LTR MaLR 1 100 -367 317 247 15 18 chr3 35082075 35082288 -192442290 + MLT1C LTR MaLR 206 467 0 * 606 307 93 58 chr3 35082556 35082951 -192441627 - L1M4 LINE L1 -2344 3802 3377 1055 222 209 3 chr3 35082951 35083271 -192441307 + MER58D DNA MER1_type 1 386 0 606 307 93 58 chr3 35083271 35083478 -192441100 - L1M4 LINE L1 -2769 3377 3179 284 258 98 45 chr3 35083482 35083837 -192440741 - L1M4 LINE L1 -3118 3028 2651 25 0 0 0 chr3 35084200 35084225 -192440353 + AT_rich Low_complexity Low_complexity 1 25 0 203 357 32 14 chr3 35084866 35084999 -192439579 + MIR SINE MIR 63 196 -66 1662 190 3 0 chr3 35085168 35085452 -192439126 - AluJo SINE Alu -12 300 16 282 301 43 0 chr3 35086431 35086524 -192438054 + MIR SINE MIR 154 250 -12 1943 144 3 3 chr3 35086906 35087191 -192437387 + AluSx SINE Alu 19 303 -9 332 319 59 55 chr3 35087191 35087445 -192437133 + HAL1 LINE L1 1026 1280 -1227 277 224 13 26 chr3 35087724 35087800 -192436778 + HAL1 LINE L1 1602 1676 -831 25 0 0 0 chr3 35088146 35088171 -192436407 + AT_rich Low_complexity Low_complexity 1 25 0 467 167 16 95 chr3 35088241 35088367 -192436211 - Charlie1 DNA MER1_type 0 2761 2646 1948 149 3 3 chr3 35088367 35088662 -192435916 - AluJb SINE Alu -15 297 3 22 0 0 0 chr3 35089464 35089486 -192435092 + AT_rich Low_complexity Low_complexity 1 22 0 843 294 49 67 chr3 35089589 35090003 -192434575 + MLT1H LTR MaLR 3 366 -189 31 26 0 0 chr3 35090973 35091011 -192433567 + AT_rich Low_complexity Low_complexity 1 38 0 2148 82 46 0 chr3 35091380 35091661 -192432917 - AluSq SINE Alu -19 294 1 540 233 23 34 chr3 35092765 35092941 -192431637 - MER104 DNA Tc2 -6 174 1 1561 167 38 3 chr3 35093776 35094069 -192430509 - AluJo SINE Alu -8 304 2 601 200 126 7 chr3 35094155 35094290 -192430288 + MER3 DNA MER1_type 59 209 0 211 243 136 82 chr3 35095891 35096097 -192428481 + MIR SINE MIR 35 251 -11 2162 116 3 0 chr3 35096763 35097057 -192427521 + AluSx SINE Alu 1 295 -17 33 43 0 0 chr3 35097925 35097972 -192426606 + AT_rich Low_complexity Low_complexity 1 47 0 206 267 0 17 chr3 35098145 35098205 -192426373 + (CCA)n Simple_repeat Simple_repeat 3 61 0 1942 112 18 0 chr3 35098435 35098739 -192425839 + AluSx SINE Alu 1 309 0 29 47 0 0 chr3 35099440 35099483 -192425095 + AT_rich Low_complexity Low_complexity 1 43 0 943 133 209 5 chr3 35099556 35099752 -192424826 + MER46A DNA MER2_type 1 236 0 23 33 0 0 chr3 35099897 35099927 -192424651 + AT_rich Low_complexity Low_complexity 1 30 0 296 315 77 5 chr3 35100443 35100596 -192423982 + MIR SINE MIR 7 159 -49 1516 176 36 19 chr3 35100992 35101299 -192423279 + AluJb SINE Alu 1 312 0 2253 98 0 0 chr3 35101545 35101841 -192422737 + AluSc SINE Alu 1 296 -13 555 198 60 0 chr3 35104592 35104708 -192419870 + L2 LINE L2 3187 3309 -4 35 63 0 0 chr3 35105798 35105861 -192418717 + AT_rich Low_complexity Low_complexity 1 63 0 22 0 0 0 chr3 35107059 35107081 -192417497 + AT_rich Low_complexity Low_complexity 1 22 0 295 130 0 0 chr3 35107113 35107159 -192417419 - MADE1 DNA Mariner -34 46 1 466 284 88 67 chr3 35107222 35107746 -192416832 + L1MC4a LINE L1 3075 3609 -2537 604 291 65 34 chr3 35107874 35108290 -192416288 + L1MC4a LINE L1 3796 4224 -1922 2337 100 0 0 chr3 35108345 35108644 -192415934 + AluSq SINE Alu 1 299 -14 953 177 80 26 chr3 35108648 35108874 -192415704 - Tigger2 DNA MER2_type 0 2718 2481 * 12081 146 60 9 chr3 35108857 35111025 -192413553 - Tigger2 DNA MER2_type -439 2279 1 286 273 68 70 chr3 35111071 35111555 -192413023 + L1MC4a LINE L1 4386 4868 -1278 1586 204 0 0 chr3 35111819 35112108 -192412470 + AluJo SINE Alu 1 289 -23 1644 244 111 19 chr3 35112155 35112750 -192411828 + L1MC4a LINE L1 5451 6100 -1708 23 0 0 0 chr3 35112777 35112800 -192411778 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 35113217 35113239 -192411339 + AT_rich Low_complexity Low_complexity 1 22 0 508 311 93 44 chr3 35113363 35113633 -192410945 - L2 LINE L2 -4 3309 3027 2054 88 84 7 chr3 35113636 35113921 -192410657 + AluSc SINE Alu 3 309 0 554 123 0 0 chr3 35114741 35114822 -192409756 - AluS SINE Alu -232 81 1 1622 184 22 0 chr3 35114945 35115249 -192409329 + AluSx SINE Alu 1 310 0 21 0 0 0 chr3 35115515 35115536 -192409042 + AT_rich Low_complexity Low_complexity 1 21 0 1711 176 7 14 chr3 35116007 35116296 -192408282 - AluJo SINE Alu -25 287 1 21 0 0 0 chr3 35118072 35118093 -192406485 + AT_rich Low_complexity Low_complexity 1 21 0 217 354 0 42 chr3 35118496 35118592 -192405986 + MIR SINE MIR 21 112 -150 2356 95 3 0 chr3 35118816 35119121 -192405457 + AluSq SINE Alu 1 306 -7 2456 80 3 0 chr3 35119122 35119434 -192405144 + AluSp SINE Alu 1 313 0 21 82 0 0 chr3 35120716 35120765 -192403813 + AT_rich Low_complexity Low_complexity 1 49 0 913 157 74 65 chr3 35120784 35121001 -192403577 + MER20 DNA MER1_type 1 219 0 586 132 149 50 chr3 35121046 35121167 -192403411 - FLAM_C SINE Alu 0 133 1 29 78 0 0 chr3 35121172 35121236 -192403342 + AT_rich Low_complexity Low_complexity 1 64 0 235 319 112 9 chr3 35122023 35122139 -192402439 + MIR SINE MIR 103 230 -32 25 65 0 0 chr3 35122579 35122625 -192401953 + AT_rich Low_complexity Low_complexity 1 46 0 2323 78 0 7 chr3 35122713 35123007 -192401571 + AluSc SINE Alu 1 292 -17 2051 114 7 4 chr3 35123295 35123576 -192401002 + AluSx SINE Alu 1 282 -30 1621 147 23 80 chr3 35123661 35123960 -192400618 + AluJo SINE Alu 1 282 -30 180 0 0 0 chr3 35124029 35124049 -192400529 + (CA)n Simple_repeat Simple_repeat 1 20 0 1476 154 62 0 chr3 35124080 35124352 -192400226 + AluJb SINE Alu 13 301 -11 1278 142 0 14 chr3 35124358 35124570 -192400008 + AluSg/x SINE Alu 85 293 -19 380 54 0 279 chr3 35124759 35124870 -192399708 + MADE1 DNA Mariner 1 80 0 22 35 0 0 chr3 35128019 35128048 -192396530 + AT_rich Low_complexity Low_complexity 1 29 0 387 241 186 68 chr3 35128226 35128446 -192396132 - L2 LINE L2 -3 3310 3065 31 26 0 0 chr3 35128468 35128506 -192396072 + AT_rich Low_complexity Low_complexity 1 38 0 1523 176 3 49 chr3 35129285 35129591 -192394987 + AluJo SINE Alu 1 292 -20 2232 98 0 0 chr3 35130796 35131091 -192393487 + AluSq SINE Alu 1 295 -18 2070 108 18 0 chr3 35131643 35131921 -192392657 + AluSx SINE Alu 1 283 -29 800 97 28 23 chr3 35131932 35131952 -192392626 + A-rich Low_complexity Low_complexity 4 22 -158 2277 101 0 0 chr3 35131952 35132249 -192392329 + AluSg SINE Alu 1 297 -13 800 97 28 23 chr3 35132249 35132404 -192392174 + A-rich Low_complexity Low_complexity 22 180 0 276 91 0 0 chr3 35132404 35132448 -192392130 + (CATAA)n Simple_repeat Simple_repeat 2 45 0 242 277 54 45 chr3 35132659 35132771 -192391807 + L1MEd LINE L1 502 614 -5505 367 312 151 9 chr3 35132912 35133130 -192391448 + L1MEd LINE L1 1008 1256 -4863 1849 236 70 34 chr3 35133173 35133800 -192390778 - L1M4 LINE L1 -1686 4460 3811 1551 189 78 22 chr3 35133811 35134171 -192390407 - MLT1D LTR MaLR -19 486 107 2091 147 0 6 chr3 35134173 35134487 -192390091 + AluSx SINE Alu 1 312 0 2298 110 0 16 chr3 35134489 35134806 -192389772 + AluSx SINE Alu 1 312 0 29 0 0 0 chr3 35135026 35135055 -192389523 + AT_rich Low_complexity Low_complexity 1 29 0 1087 76 0 0 chr3 35135627 35135758 -192388820 - AluSg SINE Alu -179 131 1 60 73 0 0 chr3 35135872 35135995 -192388583 + AT_rich Low_complexity Low_complexity 1 123 0 1884 114 51 0 chr3 35136243 35136516 -192388062 - AluSx SINE Alu -25 287 1 216 275 43 29 chr3 35136555 35136624 -192387954 + L2 LINE L2 3201 3270 -2 369 0 0 0 chr3 35137351 35137392 -192387186 + (CA)n Simple_repeat Simple_repeat 1 41 0 855 215 0 0 chr3 35137956 35138119 -192386459 - FRAM SINE Alu -13 163 1 2351 106 0 3 chr3 35139026 35139337 -192385241 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr3 35139649 35139672 -192384906 + AT_rich Low_complexity Low_complexity 1 23 0 2231 110 7 3 chr3 35139675 35139983 -192384595 + AluSx SINE Alu 1 309 -3 898 103 0 0 chr3 35140653 35140770 -192383808 + AluSp SINE Alu 1 117 -196 1293 169 58 4 chr3 35140770 35140995 -192383583 - AluSx SINE Alu -73 239 3 3604 264 90 51 chr3 35141013 35141537 -192383041 + HAL1 LINE L1 758 1260 -1247 2061 132 3 0 chr3 35141537 35141824 -192382754 + AluSx SINE Alu 1 288 -24 3604 264 90 51 chr3 35141824 35142583 -192381995 + HAL1 LINE L1 1260 1988 -519 1913 152 0 0 chr3 35142583 35142866 -192381712 + AluJb SINE Alu 1 283 -29 3604 264 90 51 chr3 35142866 35142888 -192381690 + HAL1 LINE L1 1988 2008 -499 1617 183 0 31 chr3 35142888 35143210 -192381368 + AluSq SINE Alu 1 312 -1 3604 264 90 51 chr3 35143210 35143587 -192380991 + HAL1 LINE L1 2008 2507 0 1398 182 3 85 chr3 35143822 35144162 -192380416 + AluJo SINE Alu 1 312 0 440 233 180 13 chr3 35144193 35144343 -192380235 + MER5B DNA MER1_type 2 176 -2 3506 201 22 77 chr3 35144538 35145563 -192379015 + LTR5 LTR ERVK 1 969 0 25 0 0 0 chr3 35146319 35146344 -192378234 + AT_rich Low_complexity Low_complexity 1 25 0 2409 92 3 0 chr3 35147962 35148267 -192376311 + AluSg SINE Alu 1 306 -4 378 0 0 0 chr3 35148528 35148570 -192376008 + (CA)n Simple_repeat Simple_repeat 1 42 0 1744 189 0 0 chr3 35149337 35149628 -192374950 + AluJo SINE Alu 13 303 -9 2340 69 3 13 chr3 35150174 35150479 -192374099 - AluSq SINE Alu -11 302 1 195 42 0 0 chr3 35150480 35150504 -192374074 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2218 108 7 0 chr3 35150734 35151041 -192373537 - AluSx SINE Alu -3 309 1 325 272 73 37 chr3 35151147 35151283 -192373295 + L2 LINE L2 3172 3312 -1 230 219 67 84 chr3 35151540 35151659 -192372919 + MLT1J LTR MaLR 11 127 -384 329 258 0 21 chr3 35152131 35152228 -192372350 + HERVL32 LTR ERVL 3323 3417 -1 2482 80 3 3 chr3 35152228 35152540 -192372038 + AluSp SINE Alu 1 312 -1 497 228 60 42 chr3 35152597 35152812 -192371766 + LTR32 LTR ERVL 87 305 -166 445 203 39 39 chr3 35153146 35153274 -192371304 + MIR SINE MIR 91 218 -44 2163 130 0 3 chr3 35153416 35153723 -192370855 + AluSq SINE Alu 1 306 -7 536 179 38 0 chr3 35153723 35153829 -192370749 - MLT1D LTR MaLR -394 111 2 894 264 108 12 chr3 35153832 35154139 -192370439 - L1MEc LINE L1 -2353 3862 3503 1325 233 36 3 chr3 35154139 35154440 -192370138 - AluJo SINE Alu -1 311 1 894 264 108 12 chr3 35154440 35154548 -192370030 - L1MEc LINE L1 -2712 3503 3407 1894 92 70 35 chr3 35154555 35154839 -192369739 - AluSx SINE Alu -17 295 2 21 0 0 0 chr3 35154909 35154930 -192369648 + AT_rich Low_complexity Low_complexity 1 21 0 1338 143 123 4 chr3 35155091 35155335 -192369243 - AluSx SINE Alu -9 303 31 1135 206 38 15 chr3 35155345 35155633 -192368945 - MER61B LTR ERV1 -29 396 1 2312 100 7 0 chr3 35155674 35155984 -192368594 - AluSx SINE Alu 0 312 1 1502 202 104 116 chr3 35155984 35156919 -192367659 - L1MEc LINE L1 -2800 3415 2492 2770 278 65 16 chr3 35156952 35158203 -192366375 - L1MEc LINE L1 -5004 1392 80 381 136 25 37 chr3 35158207 35158288 -192366290 + L1MA9 LINE L1 6025 6104 -208 2371 86 0 43 chr3 35158290 35158616 -192365962 + AluSx SINE Alu 1 312 0 22 0 0 0 chr3 35158625 35158647 -192365931 + AT_rich Low_complexity Low_complexity 1 22 0 256 274 5 79 chr3 35158652 35158867 -192365711 + L1MA9 LINE L1 6112 6310 -2 1080 148 13 93 chr3 35159058 35159143 -192365435 + L1MA9 LINE L1 6027 6117 -195 1544 199 0 43 chr3 35159143 35159465 -192365113 + AluSx SINE Alu 5 312 0 261 0 0 0 chr3 35159467 35159496 -192365082 + (TA)n Simple_repeat Simple_repeat 1 29 0 1080 148 13 93 chr3 35159496 35159717 -192364861 + L1MA9 LINE L1 6118 6311 -1 2181 115 3 16 chr3 35160375 35160689 -192363889 - AluSg SINE Alu 0 310 1 221 203 0 0 chr3 35160715 35160772 -192363806 + MIR SINE MIR 104 144 -64 207 0 0 0 chr3 35161144 35161167 -192363411 + (T)n Simple_repeat Simple_repeat 1 23 0 2319 110 0 16 chr3 35161433 35161750 -192362828 + AluSx SINE Alu 1 312 0 29 0 0 0 chr3 35161970 35161999 -192362579 + AT_rich Low_complexity Low_complexity 1 29 0 1099 76 0 0 chr3 35162572 35162703 -192361875 - AluSg SINE Alu -179 131 1 60 73 0 0 chr3 35162817 35162940 -192361638 + AT_rich Low_complexity Low_complexity 1 123 0 868 240 5 10 chr3 35163425 35163629 -192360949 - MER82 DNA MER2_type 0 653 451 218 315 0 0 chr3 35163718 35163772 -192360806 + L2 LINE L2 3214 3267 -5 351 223 62 15 chr3 35163925 35164055 -192360523 + L1MB5 LINE L1 6030 6165 -9 2340 161 9 78 chr3 35164956 35165535 -192359043 + L1MD3 LINE L1 7443 7981 -14 2129 98 7 0 chr3 35166938 35167223 -192357355 + AluSp SINE Alu 1 287 -26 724 172 9 9 chr3 35167634 35167750 -192356828 + FLAM_C SINE Alu 1 116 -17 29 0 0 0 chr3 35167751 35167780 -192356798 + AT_rich Low_complexity Low_complexity 1 29 0 2200 115 0 0 chr3 35167789 35168085 -192356493 + AluSx SINE Alu 1 296 -16 22 56 0 0 chr3 35168511 35168547 -192356031 + AT_rich Low_complexity Low_complexity 1 36 0 443 66 0 0 chr3 35169176 35169237 -192355341 - Alu SINE Alu -9 303 243 1578 145 85 0 chr3 35169237 35169485 -192355093 + AluSx SINE Alu 37 305 -7 4009 188 90 19 chr3 35170732 35171814 -192352764 - Charlie1 DNA MER1_type -19 2742 1585 25 31 0 0 chr3 35171878 35171910 -192352668 + AT_rich Low_complexity Low_complexity 1 32 0 1883 131 6 32 chr3 35172314 35172627 -192351951 + AluSx SINE Alu 1 305 -7 303 214 0 0 chr3 35173573 35173643 -192350935 + (TA)n Simple_repeat Simple_repeat 1 70 0 1909 145 10 7 chr3 35173644 35173941 -192350637 - AluSx SINE Alu -14 298 1 252 0 0 0 chr3 35174814 35174842 -192349736 + (CA)n Simple_repeat Simple_repeat 1 28 0 1010 136 0 13 chr3 35174854 35175037 -192349541 + AluSg/x SINE Alu 134 312 0 558 207 0 0 chr3 35175120 35175236 -192349342 + FLAM_C SINE Alu 26 141 -2 1718 172 7 10 chr3 35175283 35175574 -192349004 + AluSx SINE Alu 1 290 -22 318 294 75 38 chr3 35175759 35175919 -192348659 + L1ME LINE L1 5497 5662 -459 982 81 25 69 chr3 35176613 35176752 -192347826 + AluSq SINE Alu 1 134 -179 2303 74 3 19 chr3 35176752 35177063 -192347515 + AluY SINE Alu 1 306 -5 982 81 25 69 chr3 35177063 35177083 -192347495 + AluSq SINE Alu 134 153 -160 579 74 0 0 chr3 35177083 35177164 -192347414 + AluSp/q SINE Alu 220 300 -13 853 152 59 150 chr3 35177201 35177529 -192347049 + MER61B LTR ERV1 1 396 -29 1584 121 73 4 chr3 35177539 35177787 -192346791 + AluSx SINE Alu 31 295 -17 1919 98 47 0 chr3 35178032 35178309 -192346269 + AluSg SINE Alu 1 290 -20 1251 172 46 23 chr3 35178354 35178643 -192345935 + MER61B LTR ERV1 1 396 -28 1752 110 38 8 chr3 35178652 35178916 -192345662 + AluSx SINE Alu 31 302 -10 180 0 0 0 chr3 35179081 35179101 -192345477 + (A)n Simple_repeat Simple_repeat 1 20 0 2289 82 20 0 chr3 35179285 35179589 -192344989 + AluY SINE Alu 1 310 -1 2474 50 7 3 chr3 35179776 35180079 -192344499 + AluY SINE Alu 1 304 -7 1822 123 0 89 chr3 35180152 35180476 -192344102 + AluSx SINE Alu 1 295 -17 279 273 62 45 chr3 35180621 35180797 -192343781 - MIR SINE MIR -76 186 8 1529 101 0 24 chr3 35181617 35181825 -192342753 - AluSx SINE Alu -99 213 11 628 225 36 0 chr3 35182035 35182173 -192342405 + FAM SINE Alu 1 143 -42 559 289 62 54 chr3 35182189 35182431 -192342147 + MIR SINE MIR 11 254 -8 2020 142 3 0 chr3 35182436 35182732 -192341846 + AluSx SINE Alu 5 301 -11 1637 153 97 43 chr3 35182760 35183153 -192341425 - MER21B LTR ERV1 -1 862 449 1761 89 13 0 chr3 35183153 35183377 -192341201 + AluSp SINE Alu 74 300 -13 234 208 0 0 chr3 35184196 35184244 -192340334 - MER41A LTR ERV1 -111 443 396 2069 103 0 4 chr3 35184268 35184549 -192340029 + AluSc SINE Alu 1 280 -29 240 35 0 0 chr3 35184552 35184581 -192339997 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 408 247 93 6 chr3 35184699 35184861 -192339717 + MER112 DNA MER1_type 74 249 -11 1666 112 127 12 chr3 35185020 35185279 -192339299 - AluSx SINE Alu -23 289 1 678 148 28 0 chr3 35185923 35186031 -192338547 + AluSq/x SINE Alu 8 118 -194 402 113 0 0 chr3 35186033 35186086 -192338492 + AluS SINE Alu 233 285 -26 31 26 0 0 chr3 35186093 35186131 -192338447 + AT_rich Low_complexity Low_complexity 1 38 0 2236 112 0 0 chr3 35186405 35186701 -192337877 + AluSx SINE Alu 1 296 -16 896 208 0 29 chr3 35186755 35186928 -192337650 + FAM SINE Alu 1 168 -7 1825 136 47 4 chr3 35187056 35187335 -192337243 + AluJb SINE Alu 14 304 -8 1685 109 55 4 chr3 35188060 35188298 -192336280 + AluSg SINE Alu 25 274 -36 1912 108 68 7 chr3 35188446 35188725 -192335853 + AluSx SINE Alu 1 296 -16 316 354 78 19 chr3 35188897 35189103 -192335475 - MIR SINE MIR -38 224 7 1570 138 214 11 chr3 35190120 35190476 -192334102 + MSTA LTR MaLR 1 428 0 212 320 90 30 chr3 35190486 35190586 -192333992 - L2 LINE L2 0 3313 3208 188 289 124 25 chr3 35190968 35191089 -192333489 - MIR SINE MIR -108 154 22 2037 87 17 37 chr3 35191223 35191521 -192333057 - AluSx SINE Alu -20 292 1 2307 75 20 0 chr3 35191842 35192137 -192332441 + AluSx SINE Alu 1 301 -11 1670 132 6 71 chr3 35192312 35192638 -192331940 + AluSx SINE Alu 1 305 -7 1770 162 7 16 chr3 35192743 35193046 -192331532 + AluJb SINE Alu 1 300 -12 1753 164 18 4 chr3 35193858 35194138 -192330440 - AluJb SINE Alu -28 284 1 297 283 152 0 chr3 35194504 35194603 -192329975 + L2 LINE L2 3158 3271 -1 2117 116 10 0 chr3 35195467 35195759 -192328819 + AluSx SINE Alu 5 299 -13 2238 84 0 3 chr3 35196098 35196385 -192328193 + AluSx SINE Alu 1 286 -26 27 0 0 0 chr3 35197431 35197458 -192327120 + GC_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr3 35197809 35197837 -192326741 + GC_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 35198164 35198186 -192326392 + GC_rich Low_complexity Low_complexity 1 22 0 2261 92 7 0 chr3 35198637 35198942 -192325636 - AluSx SINE Alu -5 307 1 301 298 145 0 chr3 35198973 35199104 -192325474 + MIR SINE MIR 113 262 0 2011 119 0 3 chr3 35199144 35199454 -192325124 + AluSx SINE Alu 1 309 -3 255 234 94 0 chr3 35200324 35200388 -192324190 - MIR SINE MIR -86 176 107 2211 105 0 3 chr3 35200436 35200742 -192323836 - AluSx SINE Alu -7 305 1 291 246 60 93 chr3 35200742 35200784 -192323794 + L2 LINE L2 3143 3185 -128 240 35 0 0 chr3 35200784 35200813 -192323765 + (CA)n Simple_repeat Simple_repeat 2 30 0 291 246 60 93 chr3 35200813 35200947 -192323631 + L2 LINE L2 3185 3313 0 444 148 0 0 chr3 35201449 35201510 -192323068 + AluS SINE Alu 2 62 -256 1181 94 29 12 chr3 35201743 35202030 -192322548 - MER4B LTR ERV1 0 610 261 663 121 0 10 chr3 35202030 35202129 -192322449 - MER4A LTR ERV1 -566 98 1 2183 62 0 10 chr3 35202201 35202515 -192322063 + AluY SINE Alu 1 311 0 344 275 143 62 chr3 35202530 35202803 -192321775 + L1MC4a LINE L1 5681 5975 -1833 1501 161 36 7 chr3 35202875 35203155 -192321423 - AluJb SINE Alu -24 288 1 1025 156 24 0 chr3 35203155 35203322 -192321256 - AluSg/x SINE Alu -11 299 129 1014 133 12 0 chr3 35203322 35203488 -192321090 - AluSc SINE Alu 0 309 142 1942 121 7 3 chr3 35203499 35203789 -192320789 - AluSx SINE Alu -21 291 1 447 172 26 35 chr3 35203793 35203909 -192320669 + L1ME1 LINE L1 6048 6162 -4 2078 107 52 50 chr3 35204061 35204424 -192320154 - THE1B LTR MaLR 0 364 1 1662 148 16 19 chr3 35204570 35204880 -192319698 + AluSx SINE Alu 3 311 -1 257 290 14 0 chr3 35205663 35205732 -192318846 + MIR SINE MIR 81 150 -112 642 241 99 59 chr3 35205733 35205924 -192318654 + MER46C DNA MER2_type 1 212 -126 2039 109 3 0 chr3 35205924 35206208 -192318370 + AluSg1 SINE Alu 1 285 -24 642 241 99 59 chr3 35206208 35206340 -192318238 + MER46C DNA MER2_type 212 337 -1 468 0 0 0 chr3 35206848 35206900 -192317678 + (CA)n Simple_repeat Simple_repeat 1 52 0 1843 113 7 41 chr3 35207340 35207671 -192316907 - AluSp SINE Alu 0 321 1 376 250 0 25 chr3 35207733 35207813 -192316765 + MER21B LTR ERV1 12 89 -774 2306 216 117 74 chr3 35207836 35208007 -192316571 + MER21B LTR ERV1 19 181 -682 2140 104 0 22 chr3 35208007 35208324 -192316254 - AluSx SINE Alu 0 312 3 2306 216 117 74 chr3 35208324 35208959 -192315619 + MER21B LTR ERV1 181 859 -4 2119 123 0 0 chr3 35209505 35209806 -192314772 + AluSq SINE Alu 1 301 -12 1162 213 18 5 chr3 35210252 35210473 -192314105 + MER58A DNA MER1_type 1 224 0 1089 199 5 0 chr3 35210510 35210701 -192313877 + AluSx SINE Alu 1 192 -120 801 149 0 14 chr3 35211687 35211828 -192312750 + AluSc SINE Alu 152 290 -19 2182 95 3 13 chr3 35212117 35212421 -192312157 - AluSp SINE Alu -12 301 1 231 308 140 0 chr3 35212816 35212923 -192311655 + MIR SINE MIR 141 262 0 313 195 212 18 chr3 35213010 35213123 -192311455 + L2 LINE L2 3179 3313 0 1463 98 0 0 chr3 35213215 35213418 -192311160 - AluSg/x SINE Alu -9 300 98 1113 173 9 19 chr3 35213522 35213736 -192310842 - AluJo SINE Alu -100 212 1 376 203 391 22 chr3 35213737 35213875 -192310703 - MIR SINE MIR -1 261 73 2109 108 3 13 chr3 35214118 35214433 -192310145 + AluSq SINE Alu 1 312 -1 1990 129 3 7 chr3 35214578 35214880 -192309698 + AluSg SINE Alu 1 301 -9 21 0 0 0 chr3 35214896 35214917 -192309661 + AT_rich Low_complexity Low_complexity 1 21 0 1940 133 0 23 chr3 35214948 35215118 -192309460 - AluSx SINE Alu -10 302 141 1823 110 88 0 chr3 35215118 35215391 -192309187 - AluSg SINE Alu -11 299 3 1940 133 0 23 chr3 35215391 35215529 -192309049 - AluSx SINE Alu -171 141 1 295 318 11 0 chr3 35215601 35215689 -192308889 + MARNA DNA Mariner 261 349 -237 226 237 211 0 chr3 35215715 35215791 -192308787 + L2 LINE L2 3222 3313 0 339 224 129 0 chr3 35215800 35215885 -192308693 + MARNA DNA Mariner 418 513 -73 865 200 205 0 chr3 35215934 35216119 -192308459 - MER45C DNA AcHobo 0 953 731 822 221 22 22 chr3 35216228 35216409 -192308169 - MER45C DNA AcHobo -724 229 49 284 296 38 57 chr3 35216798 35216957 -192307621 - L2 LINE L2 -534 2780 2625 764 137 5 8 chr3 35217097 35217313 -192307265 + AluSx SINE Alu 2 302 -10 1853 121 7 3 chr3 35217555 35217859 -192306719 + AluSx SINE Alu 1 305 0 2115 121 3 0 chr3 35217951 35218258 -192306320 + AluSx SINE Alu 1 308 -4 202 226 57 0 chr3 35218535 35218588 -192305990 + MER5A DNA MER1_type 26 81 -108 662 234 91 29 chr3 35219833 35220249 -192304329 + LTR16C LTR ERVL 1 483 -8 1076 268 91 56 chr3 35220853 35220986 -192303592 + LTR16A LTR ERVL 26 153 -297 2099 103 3 3 chr3 35220986 35221277 -192303301 + AluSx SINE Alu 1 291 -21 1076 268 91 56 chr3 35221277 35221539 -192303039 + LTR16A LTR ERVL 153 435 -15 776 153 0 0 chr3 35221583 35221694 -192302884 + AluJo/FLAM SINE Alu 4 114 -188 2072 117 0 0 chr3 35221694 35222015 -192302563 - AluSx SINE Alu 0 321 1 1738 184 48 12 chr3 35222017 35222348 -192302230 + MLT1A1 LTR MaLR 23 365 0 508 295 116 52 chr3 35222349 35222736 -192301842 - MLT1J2 LTR MaLR -10 440 29 2281 87 0 3 chr3 35224137 35224436 -192300142 + AluSq SINE Alu 1 298 -15 549 222 8 0 chr3 35224618 35224735 -192299843 - L1MB7 LINE L1 -19 6165 6048 1121 158 0 0 chr3 35224735 35224899 -192299679 + U1 snRNA snRNA 1 164 -1 988 194 1 41 chr3 35224927 35225056 -192299522 - L1MB7 LINE L1 -123 6055 5940 2095 102 0 0 chr3 35225056 35225367 -192299211 - AluSq SINE Alu 0 311 1 988 194 1 41 chr3 35225367 35225484 -192299094 - L1MB7 LINE L1 -238 5940 5820 695 86 0 0 chr3 35225484 35225577 -192299001 - AluSg/x SINE Alu -9 300 208 921 201 80 17 chr3 35225585 35225854 -192298724 + L1M4 LINE L1 4174 4464 -1682 1550 170 47 4 chr3 35225854 35226130 -192298448 + AluJo SINE Alu 3 290 -22 921 201 80 17 chr3 35226130 35226148 -192298430 + L1M4 LINE L1 4464 4479 -1667 661 184 9 0 chr3 35226148 35226257 -192298321 + AluJo SINE Alu 26 135 -177 2237 113 0 0 chr3 35226258 35226569 -192298009 + AluSx SINE Alu 1 311 -1 721 170 0 0 chr3 35226860 35226972 -192297606 - AluSq/x SINE Alu -199 113 2 1848 144 6 6 chr3 35227067 35227199 -192297379 + AluSx SINE Alu 1 132 -180 1927 113 0 0 chr3 35227199 35227464 -192297114 + AluSx SINE Alu 27 291 -21 1848 144 6 6 chr3 35227464 35227643 -192296935 + AluSx SINE Alu 131 312 0 970 156 24 0 chr3 35227643 35227810 -192296768 + AluSg/x SINE Alu 131 301 -11 1520 154 33 7 chr3 35227819 35228092 -192296486 + AluJb SINE Alu 9 288 -24 414 55 0 0 chr3 35228453 35228534 -192296044 - Alu SINE Alu 0 311 231 369 302 0 0 chr3 35278534 35278630 -192245948 - L2 LINE L2 -368 2945 2850 1960 89 0 0 chr3 35278637 35278873 -192245705 + AluSx SINE Alu 7 242 -70 221 0 0 33 chr3 35278887 35278917 -192245661 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr3 35278954 35278977 -192245601 + AT_rich Low_complexity Low_complexity 1 23 0 322 296 112 35 chr3 35279102 35279271 -192245307 + MIR SINE MIR 81 262 0 207 241 19 0 chr3 35279279 35279333 -192245245 + (TTA)n Simple_repeat Simple_repeat 2 56 0 342 0 0 0 chr3 35279430 35279468 -192245110 + (TG)n Simple_repeat Simple_repeat 1 38 0 1883 122 30 0 chr3 35279468 35279739 -192244839 - AluSx SINE Alu -33 279 1 545 145 0 0 chr3 35279863 35279946 -192244632 + AluJ/FLAM SINE Alu 9 91 -221 1633 177 0 40 chr3 35280047 35280324 -192244254 - AluJo SINE Alu -46 266 1 1303 210 41 34 chr3 35280354 35280617 -192243961 + L1M4 LINE L1 2911 3180 -2966 2034 121 48 38 chr3 35280617 35280988 -192243590 + THE1C LTR MaLR 1 375 0 1303 210 41 34 chr3 35280988 35281166 -192243412 + L1M4 LINE L1 3180 3355 -2791 944 150 20 0 chr3 35281272 35281419 -192243159 + AluSg/x SINE Alu 131 280 -30 180 204 82 0 chr3 35282057 35282106 -192242472 + L2 LINE L2 3219 3271 -1 2104 225 54 33 chr3 35282122 35282637 -192241941 - MLT1E LTR MaLR -11 582 57 306 254 51 43 chr3 35282850 35282988 -192241590 - L2 LINE L2 -200 3072 2934 245 339 46 23 chr3 35283056 35283230 -192241348 + MIR3 SINE MIR 30 207 -1 2112 145 0 0 chr3 35283982 35284292 -192240286 - AluSx SINE Alu -2 310 1 330 87 0 0 chr3 35284843 35284889 -192239689 + (TG)n Simple_repeat Simple_repeat 2 47 0 2059 122 14 0 chr3 35285205 35285513 -192239065 - AluSx SINE Alu 0 312 1 1932 112 76 0 chr3 35285680 35285957 -192238621 - AluSp SINE Alu -15 298 1 2036 165 8 61 chr3 35285992 35286387 -192238191 + MLT1B LTR MaLR 17 390 0 496 170 11 11 chr3 35286433 35286527 -192238051 + MER74A LTR ERVL 30 123 -435 44 35 0 0 chr3 35286700 35286758 -192237820 + AT_rich Low_complexity Low_complexity 1 58 0 2266 128 0 3 chr3 35286878 35287191 -192237387 - AluSx SINE Alu 0 312 1 653 130 20 0 chr3 35288052 35288152 -192236426 + MSTD LTR MaLR 1 102 -294 1467 193 0 63 chr3 35288158 35288489 -192236089 - AluJo SINE Alu 0 312 1 39 60 0 0 chr3 35288490 35288557 -192236021 + AT_rich Low_complexity Low_complexity 1 67 0 848 158 0 0 chr3 35288559 35288686 -192235892 - FLAM_C SINE Alu -16 127 1 731 232 105 11 chr3 35288686 35288876 -192235702 + MSTD LTR MaLR 122 329 -67 1842 99 4 16 chr3 35288880 35289123 -192235455 - AluSx SINE Alu -17 295 56 1325 69 6 0 chr3 35289586 35289759 -192234819 + L1PA11 LINE L1 5998 6171 -3 2084 124 13 22 chr3 35290340 35290655 -192233923 + AluSq SINE Alu 1 312 -1 384 349 59 21 chr3 35290818 35291056 -192233522 - MIR SINE MIR -3 259 13 516 172 123 49 chr3 35291209 35291323 -192233255 + MER44D DNA MER2_type 5 109 -2382 2305 100 7 0 chr3 35291323 35291623 -192232955 - AluSp SINE Alu -11 302 1 350 89 0 0 chr3 35291632 35291677 -192232901 - AluSc SINE Alu -48 251 207 1988 148 3 0 chr3 35291951 35292242 -192232336 - AluSx SINE Alu -17 295 4 1470 263 121 28 chr3 35293633 35294170 -192230408 + MLT1K LTR MaLR 2 588 0 307 211 0 0 chr3 35294423 35294475 -192230103 + MER44D DNA MER2_type 558 609 0 1749 163 0 30 chr3 35294627 35294928 -192229650 + AluJb SINE Alu 1 292 -20 1351 154 133 39 chr3 35295218 35295503 -192229075 - AluJo SINE Alu 0 312 1 626 122 0 0 chr3 35296511 35296601 -192227977 - AluSg/x SINE Alu -56 254 165 490 228 26 47 chr3 35296712 35296905 -192227673 + L1MC5 LINE L1 7756 7944 -17 2375 36 39 42 chr3 35296996 35297304 -192227274 - AluY SINE Alu -4 307 1 789 210 58 76 chr3 35298490 35298612 -192225966 + ORSL DNA AcHobo 1 124 -151 2260 97 0 0 chr3 35298612 35298910 -192225668 + AluY SINE Alu 1 298 -13 186 43 0 0 chr3 35298910 35298933 -192225645 + (TA)n Simple_repeat Simple_repeat 1 23 0 789 210 58 76 chr3 35298933 35299085 -192225493 + ORSL DNA AcHobo 122 271 -4 899 128 0 0 chr3 35299203 35299328 -192225250 - AluJb SINE Alu -181 131 7 1551 105 5 5 chr3 35299512 35299721 -192224857 + AluSx SINE Alu 1 209 -103 707 183 108 0 chr3 35299721 35299841 -192224737 + AluJo/FRAM SINE Alu 148 280 -32 3027 236 53 30 chr3 35300004 35300846 -192223732 + L1ME2 LINE L1 5293 6154 -10 2629 216 104 64 chr3 35300861 35301886 -192222692 + L1MC5 LINE L1 6607 7678 -283 792 122 9 0 chr3 35302081 35302188 -192222390 + AluSx SINE Alu 194 301 -11 590 336 40 5 chr3 35302590 35302813 -192221765 + MIR SINE MIR 1 231 -31 1659 151 88 18 chr3 35302894 35302996 -192221582 - AluJb SINE Alu -7 305 212 2818 187 57 88 chr3 35302996 35303535 -192221043 + LTR8A LTR ERV1 1 555 -172 2216 110 3 0 chr3 35303535 35303827 -192220751 + AluSq SINE Alu 1 293 -20 2818 187 57 88 chr3 35303827 35303856 -192220722 + LTR8A LTR ERV1 555 583 -144 1771 105 93 0 chr3 35303856 35304152 -192220426 + AluSg SINE Alu 1 320 0 2818 187 57 88 chr3 35304152 35304331 -192220247 + LTR8A LTR ERV1 583 727 0 1659 151 88 18 chr3 35304331 35304513 -192220065 - AluJb SINE Alu -100 212 1 253 300 0 0 chr3 35304573 35304643 -192219935 + MER117 DNA MER1_type 78 147 -50 198 286 0 48 chr3 35305019 35305082 -192219496 + L2 LINE L2 3209 3268 -4 480 242 128 40 chr3 35305181 35305330 -192219248 + MIR SINE MIR 47 208 -54 268 246 74 66 chr3 35305550 35305672 -192218906 + MLT1L LTR MaLR 145 267 -348 320 86 17 86 chr3 35305778 35305820 -192218758 + AluJo SINE Alu 96 135 -167 2309 102 3 0 chr3 35305820 35306114 -192218464 + AluSq SINE Alu 3 297 -16 320 86 17 86 chr3 35306114 35306129 -192218449 + AluJo SINE Alu 135 149 -153 383 119 0 0 chr3 35306132 35306199 -192218379 - L1MEc LINE L1 -4282 2114 2048 1240 123 33 19 chr3 35306200 35306516 -192218062 + MLT2A2 LTR ERVL 234 453 0 694 200 36 31 chr3 35306516 35306776 -192217802 - L1MEc LINE L1 -4158 2238 1893 4983 254 57 37 chr3 35306843 35307257 -192217321 - L1MEc LINE L1 -4494 1902 1498 479 139 13 0 chr3 35307257 35307336 -192217242 - MADE1 DNA Mariner 0 80 1 4983 254 57 37 chr3 35307336 35308325 -192216253 - L1MEc LINE L1 -4898 1498 530 1153 184 58 0 chr3 35308325 35308532 -192216046 + MER20 DNA MER1_type 1 219 0 4983 254 57 37 chr3 35308532 35308873 -192215705 - L1MEc LINE L1 -5866 530 197 401 75 0 15 chr3 35308873 35308940 -192215638 + (TA)n Simple_repeat Simple_repeat 2 67 0 4983 254 57 37 chr3 35308940 35309032 -192215546 - L1MEc LINE L1 -6199 197 108 2127 122 0 20 chr3 35309032 35309336 -192215242 - AluSx SINE Alu -14 298 1 4983 254 57 37 chr3 35309336 35309356 -192215222 - L1MEc LINE L1 -6288 108 7 297 207 0 37 chr3 35309447 35309529 -192215049 + Charlie8 DNA MER1_type 82 160 -2257 608 249 121 77 chr3 35309618 35309891 -192214687 + LTR33 LTR ERVL 1 285 -236 1497 182 70 40 chr3 35310766 35311068 -192213510 + AluJo SINE Alu 1 311 -1 192 77 0 0 chr3 35311071 35311097 -192213481 + (GAA)n Simple_repeat Simple_repeat 2 27 0 1276 102 6 6 chr3 35311200 35311376 -192213202 - AluSg SINE Alu -134 176 1 2279 96 0 23 chr3 35311401 35311702 -192212876 - AluSg SINE Alu -16 294 1 1410 141 8 25 chr3 35311760 35312002 -192212576 - MER39B LTR ERV1 -3 650 413 1945 116 3 21 chr3 35312003 35312288 -192212290 + AluSx SINE Alu 1 280 -32 218 200 40 0 chr3 35312307 35312357 -192212221 + A-rich Low_complexity Low_complexity 5 56 0 2168 76 152 33 chr3 35312723 35312760 -192211818 + MER39B LTR ERV1 12 43 -610 222 37 0 0 chr3 35312760 35312787 -192211791 + (TC)n Simple_repeat Simple_repeat 1 27 0 2168 76 152 33 chr3 35312787 35313117 -192211461 + MER39B LTR ERV1 43 423 -230 1074 99 7 0 chr3 35313117 35313259 -192211319 - AluSp/q SINE Alu -15 298 156 265 162 14 14 chr3 35315114 35315188 -192209390 + CT-rich Low_complexity Low_complexity 3 76 0 2258 105 3 7 chr3 35315264 35315559 -192209019 + AluSx SINE Alu 1 294 -18 1354 215 33 10 chr3 35315677 35315979 -192208599 + AluJo SINE Alu 3 311 -1 2292 98 0 19 chr3 35315979 35316294 -192208284 + AluY SINE Alu 1 309 -2 2181 84 40 10 chr3 35316374 35316671 -192207907 + AluY SINE Alu 1 306 -5 1077 168 31 75 chr3 35317754 35317886 -192206692 + MER20 DNA MER1_type 1 120 -99 1667 232 118 47 chr3 35317886 35318309 -192206269 - LTR27 LTR ERV1 -1 635 157 1995 152 7 0 chr3 35318309 35318605 -192205973 + AluSp SINE Alu 1 298 -15 1667 232 118 47 chr3 35318605 35318772 -192205806 - LTR27 LTR ERV1 -479 157 3 1077 168 31 75 chr3 35318772 35318865 -192205713 + MER20 DNA MER1_type 120 216 -3 464 258 10 93 chr3 35319528 35319722 -192204856 - MER5B DNA MER1_type 0 178 1 877 203 7 0 chr3 35319732 35319885 -192204693 + FRAM SINE Alu 4 157 -19 2382 87 7 0 chr3 35320451 35320761 -192203817 - AluSp SINE Alu -1 312 1 373 300 30 0 chr3 35321885 35321985 -192202593 + MIR SINE MIR 4 106 -156 23 0 0 0 chr3 35321985 35322008 -192202570 + AT_rich Low_complexity Low_complexity 1 23 0 1123 142 0 0 chr3 35322009 35322171 -192202407 - AluSg/x SINE Alu -22 290 129 201 98 244 0 chr3 35322175 35322216 -192202362 + MIR SINE MIR 93 143 -119 833 170 7 15 chr3 35322223 35322358 -192202220 - AluJo SINE Alu -177 135 2 337 214 36 12 chr3 35322730 35322814 -192201764 + LTR16A1 LTR ERVL 346 431 -26 365 224 0 0 chr3 35322814 35322881 -192201697 + MIR SINE MIR 186 252 -10 2156 110 0 7 chr3 35323373 35323663 -192200915 + AluSx SINE Alu 1 288 -24 212 405 8 16 chr3 35323884 35324005 -192200573 + L2 LINE L2 3127 3246 -26 754 175 0 8 chr3 35324250 35324370 -192200208 + FLAM_A SINE Alu 16 134 -8 229 283 61 50 chr3 35324616 35324796 -192199782 + MER3 DNA MER1_type 28 209 0 * 919 230 10 0 chr3 35324796 35324841 -192199737 - MER3 DNA MER1_type -160 49 3 2162 100 7 23 chr3 35324943 35325244 -192199334 + AluSx SINE Alu 1 296 -16 1596 182 6 43 chr3 35325716 35326045 -192198533 - MLT1A1 LTR MaLR -48 317 1 242 285 122 87 chr3 35326046 35326218 -192198360 + L2 LINE L2 3136 3313 0 2322 96 0 0 chr3 35326354 35326647 -192197931 - AluSx SINE Alu -19 293 1 1487 248 14 6 chr3 35326708 35327059 -192197519 + LTR16A LTR ERVL 92 445 -5 2372 102 0 3 chr3 35328131 35328444 -192196134 + AluSq SINE Alu 1 312 -1 1924 115 0 77 chr3 35328470 35328782 -192195796 + AluSx SINE Alu 1 288 -24 1403 141 31 39 chr3 35329102 35329177 -192195401 - L1MC2 LINE L1 -2 6342 6268 2331 98 0 10 chr3 35329177 35329483 -192195095 + AluSx SINE Alu 1 303 -9 1403 141 31 39 chr3 35329483 35329662 -192194916 - L1MC2 LINE L1 -76 6268 6090 1062 213 142 43 chr3 35329770 35329901 -192194677 - L1ME2 LINE L1 -132 6032 5915 2137 125 0 0 chr3 35329901 35330190 -192194388 - AluSg SINE Alu -21 289 1 1062 213 142 43 chr3 35330190 35330410 -192194168 - L1ME2 LINE L1 -249 5915 5646 1370 168 111 68 chr3 35330434 35330858 -192193720 + LTR7 LTR ERV1 1 442 -8 2290 189 42 43 chr3 35330866 35331727 -192192851 + HERVH LTR ERV1 1 1182 -6531 1457 157 4 25 chr3 35331725 35331999 -192192579 + HERVH LTR ERV1 2728 2995 -4718 * 7216 128 5 8 chr3 35331978 35333696 -192190882 + HERVH LTR ERV1 3140 5286 -1805 3077 81 7 11 chr3 35333699 35334132 -192190446 + HERVH LTR ERV1 7283 7713 0 1222 171 92 123 chr3 35334132 35334588 -192189990 + LTR7 LTR ERV1 1 442 -8 1699 175 3 14 chr3 35334589 35334875 -192189703 - AluJo SINE Alu -29 283 1 915 211 26 5 chr3 35334875 35335065 -192189513 - L1ME2 LINE L1 -507 5657 5464 2334 109 0 0 chr3 35335111 35335415 -192189163 + AluSg1 SINE Alu 1 304 -5 3287 151 9 7 chr3 35335623 35336179 -192188399 - L1P LINE L1 -1174 4972 4416 226 293 38 38 chr3 35336298 35336404 -192188174 - MIR SINE MIR 0 262 157 195 294 0 0 chr3 35336941 35336992 -192187586 + MIR SINE MIR 211 261 -1 180 111 0 0 chr3 35337031 35337058 -192187520 + (TAG)n Simple_repeat Simple_repeat 3 29 0 300 96 19 19 chr3 35337246 35337298 -192187280 - MIR SINE MIR -121 141 90 616 308 13 36 chr3 35338039 35338263 -192186315 + MIR SINE MIR 18 236 -26 1677 110 0 45 chr3 35339835 35340080 -192184498 + AluSg SINE Alu 1 234 -76 1315 148 0 10 chr3 35340182 35340384 -192184194 + AluSg/x SINE Alu 99 298 -14 553 220 126 5 chr3 35340386 35340577 -192184001 + L1ME1 LINE L1 2257 2470 -3676 443 219 19 0 chr3 35340585 35340690 -192183888 + L1ME1 LINE L1 3825 3931 -2215 225 164 0 90 chr3 35341193 35341220 -192183358 - L1ME4a LINE L1 -1 6120 6092 2187 122 0 3 chr3 35341220 35341531 -192183047 + AluSx SINE Alu 1 310 -2 225 164 0 90 chr3 35341531 35341570 -192183008 - L1ME4a LINE L1 -29 6092 6060 3127 193 57 147 chr3 35341731 35342397 -192182181 + L1ME1 LINE L1 3912 4636 -1530 1378 206 28 28 chr3 35342397 35342684 -192181894 + AluJo SINE Alu 6 292 -20 3127 193 57 147 chr3 35342684 35343462 -192181116 + L1ME1 LINE L1 4636 5483 -683 2398 73 0 25 chr3 35343462 35343778 -192180800 + AluY SINE Alu 1 308 -3 3127 193 57 147 chr3 35343778 35344045 -192180533 + L1ME1 LINE L1 5483 5655 -511 2015 134 13 0 chr3 35344045 35344351 -192180227 + AluSx SINE Alu 1 310 -2 3127 193 57 147 chr3 35344351 35344697 -192179881 + L1ME1 LINE L1 5655 6031 -135 1558 152 3 87 chr3 35345331 35345667 -192178911 + AluJo SINE Alu 1 310 0 1276 187 0 123 chr3 35346127 35346332 -192178246 - AluSx SINE Alu -10 302 154 1679 127 4 4 chr3 35346332 35346569 -192178009 - AluSg SINE Alu -13 297 61 1276 187 0 123 chr3 35346569 35346705 -192177873 - AluSx SINE Alu -158 154 3 21 36 0 0 chr3 35347352 35347380 -192177198 + AT_rich Low_complexity Low_complexity 1 28 0 290 247 12 12 chr3 35349004 35349085 -192175493 - L2 LINE L2 -35 3278 3198 21 36 0 0 chr3 35349225 35349253 -192175325 + AT_rich Low_complexity Low_complexity 1 28 0 433 145 14 0 chr3 35349481 35349550 -192175028 - AluJ/FRAM SINE Alu -11 301 232 453 175 0 0 chr3 35349658 35349721 -192174857 - AluJ/FLAM SINE Alu -247 65 3 25 51 0 0 chr3 35349726 35349765 -192174813 + AT_rich Low_complexity Low_complexity 1 39 0 2293 111 0 0 chr3 35350703 35351000 -192173578 - AluSx SINE Alu -15 297 1 1398 165 173 8 chr3 35351073 35351321 -192173257 - AluSg SINE Alu -11 289 1 1669 179 0 38 chr3 35351461 35351774 -192172804 + AluJo SINE Alu 1 301 -11 821 285 162 15 chr3 35351870 35352210 -192172368 + LTR16C LTR ERVL 99 488 -3 410 236 14 25 chr3 35352216 35352232 -192172346 + MER5A DNA MER1_type 72 87 -102 1035 208 47 24 chr3 35352232 35352487 -192172091 + MIR SINE MIR 2 262 0 410 236 14 25 chr3 35352487 35352583 -192171995 + MER5A DNA MER1_type 87 189 0 416 220 44 11 chr3 35352849 35352940 -192171638 + MER5A DNA MER1_type 1 94 -95 411 245 0 32 chr3 35352970 35353064 -192171514 - MLT1F1 LTR MaLR -442 125 35 1845 216 233 51 chr3 35353067 35353848 -192170730 - L1MC4 LINE L1 -908 7134 6212 301 273 68 15 chr3 35353979 35354111 -192170467 - L1ME4a LINE L1 -17 6104 5966 284 274 0 0 chr3 35355082 35355144 -192169434 - L2 LINE L2 -10 3262 3201 2347 180 27 56 chr3 35355345 35355829 -192168749 - MER82 DNA MER2_type -22 631 162 1819 189 43 9 chr3 35355826 35356176 -192168402 + MLT1A2 LTR MaLR 6 367 -7 * 279 310 0 0 chr3 35356177 35356248 -192168330 - L2 LINE L2 -55 3258 3188 361 217 9 85 chr3 35356297 35356403 -192168175 + L1ME LINE L1 5622 5719 -443 699 206 22 15 chr3 35356422 35356558 -192168020 + FLAM_A SINE Alu 6 142 0 5914 131 37 32 chr3 35356684 35358058 -192166520 - L1MA4 LINE L1 -2 6298 4900 226 262 16 0 chr3 35358138 35358199 -192166379 + (TATATG)n Simple_repeat Simple_repeat 2 63 0 315 49 0 0 chr3 35358993 35359034 -192165544 + (TG)n Simple_repeat Simple_repeat 2 42 0 1691 143 51 11 chr3 35359305 35359602 -192164976 - AluJb SINE Alu 0 308 1 1667 166 254 56 chr3 35359645 35360164 -192164414 + LTR29 LTR ERV1 1 622 0 1782 176 3 7 chr3 35360203 35360509 -192164069 + AluJo SINE Alu 1 305 -7 257 253 40 27 chr3 35360810 35360885 -192163693 - MIR SINE MIR -96 112 37 725 218 163 44 chr3 35360921 35361240 -192163338 - MLT1J1 LTR MaLR -13 433 104 438 326 34 7 chr3 35361885 35362032 -192162546 - MIR SINE MIR -3 259 109 600 150 7 57 chr3 35362034 35362174 -192162404 + L1MC4 LINE L1 7686 7818 -224 2328 96 0 0 chr3 35362174 35362467 -192162111 - AluSg1 SINE Alu -16 293 1 262 111 0 0 chr3 35362481 35362526 -192162052 - AluSp SINE Alu -2 301 257 1813 72 5 0 chr3 35362526 35362748 -192161830 - AluSp SINE Alu -90 223 1 559 138 0 184 chr3 35362748 35362944 -192161634 + L1MC4 LINE L1 7808 7967 -75 1859 185 25 11 chr3 35362948 35363304 -192161274 - MLT1A2 LTR MaLR -13 361 1 337 158 40 13 chr3 35363305 35363381 -192161197 + L1MC4 LINE L1 7965 8042 0 192 225 25 0 chr3 35363410 35363450 -192161128 - MIR SINE MIR -100 108 68 2059 111 36 16 chr3 35363776 35364082 -192160496 + AluSx SINE Alu 1 312 0 180 170 42 42 chr3 35364222 35364387 -192160191 + (TTATA)n Simple_repeat Simple_repeat 1 165 0 207 0 0 0 chr3 35364549 35364572 -192160006 + (A)n Simple_repeat Simple_repeat 1 23 0 2473 65 0 16 chr3 35364573 35364883 -192159695 + AluY SINE Alu 1 305 -6 1997 114 42 7 chr3 35364883 35365172 -192159406 + AluSc SINE Alu 1 299 -10 706 179 0 0 chr3 35365274 35365380 -192159198 - FRAM SINE Alu -17 159 54 242 281 158 53 chr3 35365749 35365863 -192158715 - MIR SINE MIR -63 145 20 2127 110 0 0 chr3 35365901 35366183 -192158395 - AluSg1 SINE Alu -16 293 12 572 163 96 22 chr3 35367620 35367685 -192156893 - MER69 DNA AcHobo 0 2526 2467 2100 120 3 22 chr3 35367685 35368027 -192156551 + AluSx SINE Alu 1 312 0 572 163 96 22 chr3 35368027 35368096 -192156482 - MER69 DNA AcHobo -59 2467 2382 311 217 0 0 chr3 35368249 35368309 -192156269 - MER69 DNA AcHobo -2465 61 2 1864 151 10 10 chr3 35368580 35368872 -192155706 + AluSx SINE Alu 1 292 -20 259 273 0 0 chr3 35368900 35368966 -192155612 - L1ME1 LINE L1 -50 6116 6051 22 0 0 0 chr3 35369011 35369033 -192155545 + AT_rich Low_complexity Low_complexity 1 22 0 312 27 0 0 chr3 35369240 35369277 -192155301 + (TG)n Simple_repeat Simple_repeat 2 38 0 2482 123 25 5 chr3 35369299 35369666 -192154912 + THE1C LTR MaLR 2 375 0 871 301 15 4 chr3 35370146 35370405 -192154173 + MIR SINE MIR 1 262 0 2232 102 3 10 chr3 35370878 35371182 -192153396 + AluSx SINE Alu 1 302 -10 1140 136 27 0 chr3 35371866 35372050 -192152528 - MER57B LTR ERV1 0 434 246 568 138 50 8 chr3 35372479 35372617 -192151961 - L1MA5 LINE L1 -162 6006 5875 202 336 16 8 chr3 35372682 35372810 -192151768 + GA-rich Low_complexity Low_complexity 1 129 0 2140 131 0 16 chr3 35374882 35375194 -192149384 + AluSq SINE Alu 1 307 -6 2338 104 7 0 chr3 35375195 35375503 -192149075 + AluSq SINE Alu 1 310 -3 384 247 31 12 chr3 35375605 35375767 -192148811 + (TA)n Simple_repeat Simple_repeat 2 166 0 2069 113 51 0 chr3 35376092 35376385 -192148193 - AluSg SINE Alu -2 308 1 651 200 0 0 chr3 35376529 35376629 -192147949 - AluJ/FLAM SINE Alu -211 101 2 261 314 14 0 chr3 35376661 35376731 -192147847 + MLT1J LTR MaLR 110 180 -331 * 284 242 32 0 chr3 35376701 35376763 -192147815 + MLT1L LTR MaLR 215 278 -337 231 265 29 0 chr3 35377134 35377202 -192147376 + GA-rich Low_complexity Low_complexity 3 72 0 4247 140 13 13 chr3 35377273 35377457 -192147121 - MER41B LTR ERV1 0 635 452 2106 110 7 26 chr3 35377457 35377766 -192146812 - AluSx SINE Alu -9 303 1 4247 140 13 13 chr3 35377766 35378216 -192146362 - MER41B LTR ERV1 -182 453 1 1938 166 0 3 chr3 35378421 35378734 -192145844 + AluJb SINE Alu 1 312 0 231 285 41 32 chr3 35379038 35379161 -192145417 + LTR16A1 LTR ERVL 333 456 -1 502 156 1 0 chr3 35380399 35380489 -192144089 - L1ME2 LINE L1 -1 6169 6078 2128 110 0 7 chr3 35380491 35380773 -192143805 + AluSx SINE Alu 1 280 -32 227 31 31 0 chr3 35380777 35380809 -192143769 + (CAAAA)n Simple_repeat Simple_repeat 5 37 0 850 201 58 83 chr3 35380943 35381067 -192143511 + ORSL DNA AcHobo 1 127 -148 2384 78 0 0 chr3 35381067 35381363 -192143215 + AluY SINE Alu 3 298 -13 186 43 0 0 chr3 35381363 35381386 -192143192 + (TA)n Simple_repeat Simple_repeat 2 24 0 850 201 58 83 chr3 35381386 35381538 -192143040 + ORSL DNA AcHobo 125 271 -4 28 48 0 0 chr3 35381984 35382026 -192142552 + GC_rich Low_complexity Low_complexity 1 42 0 326 119 48 0 chr3 35382098 35382182 -192142396 + (CCG)n Simple_repeat Simple_repeat 3 90 0 628 149 43 0 chr3 35383653 35383747 -192140831 + AluS SINE Alu 2 99 -214 1635 113 34 8 chr3 35383747 35383986 -192140592 + AluSx SINE Alu 54 298 -14 1068 90 8 0 chr3 35385085 35385219 -192139359 + AluY SINE Alu 1 135 -176 321 186 60 18 chr3 35385249 35385416 -192139162 + A-rich Low_complexity Low_complexity 1 174 0 230 207 60 20 chr3 35385433 35385583 -192138995 + A-rich Low_complexity Low_complexity 1 156 0 1222 114 49 0 chr3 35385585 35385769 -192138809 + AluSc SINE Alu 115 307 -2 1834 126 59 0 chr3 35386449 35386720 -192137858 - AluSx SINE Alu -25 287 1 534 264 65 78 chr3 35387610 35387841 -192136737 + Charlie8 DNA MER1_type 4 231 -2186 1913 148 14 0 chr3 35388016 35388293 -192136285 + AluSx SINE Alu 1 281 -31 528 81 0 0 chr3 35388393 35388467 -192136111 + Alu SINE Alu 235 308 -1 36 0 0 0 chr3 35388972 35389008 -192135570 + AT_rich Low_complexity Low_complexity 1 36 0 2150 105 3 38 chr3 35389874 35390189 -192134389 - AluSx SINE Alu -8 304 1 927 262 97 57 chr3 35390225 35390623 -192133955 + L1M4 LINE L1 4067 4505 -1641 1625 186 7 0 chr3 35390623 35390930 -192133648 + AluJb SINE Alu 1 309 0 927 262 97 57 chr3 35390930 35391199 -192133379 + L1M4 LINE L1 4505 4762 -1384 2239 133 0 0 chr3 35391199 35391508 -192133070 + AluSx SINE Alu 1 309 -3 719 303 201 25 chr3 35391607 35392050 -192132528 + MLT1G1 LTR MaLR 11 531 -64 1315 144 9 18 chr3 35392095 35392324 -192132254 + AluJb SINE Alu 82 308 -4 207 0 0 0 chr3 35392327 35392350 -192132228 + (GAAAA)n Simple_repeat Simple_repeat 3 25 0 427 294 60 44 chr3 35392476 35392792 -192131786 + L1M4 LINE L1 2147 2467 -3679 265 274 75 28 chr3 35392799 35392905 -192131673 - MLT1I LTR MaLR -3 406 296 276 279 63 54 chr3 35393018 35393129 -192131449 - MLT1I LTR MaLR -286 123 12 21 0 0 0 chr3 35393389 35393410 -192131168 + AT_rich Low_complexity Low_complexity 1 21 0 1754 163 39 3 chr3 35393423 35393706 -192130872 + AluJo SINE Alu 3 295 -17 14729 166 41 20 chr3 35393891 35399899 -192124679 + L1MA1 LINE L1 11 5893 -1828 2273 105 3 3 chr3 35399899 35400203 -192124375 + AluSx SINE Alu 1 304 -8 14729 166 41 20 chr3 35400203 35400618 -192123960 + L1MA1 LINE L1 5893 6298 -1423 1986 155 3 0 chr3 35400618 35400914 -192123664 + AluSx SINE Alu 1 297 -15 14729 166 41 20 chr3 35400914 35401821 -192122757 + L1MA1 LINE L1 6298 7721 0 2772 207 38 48 chr3 35401819 35402510 -192122068 + L1ME1 LINE L1 5350 6033 -133 * 867 195 58 137 chr3 35403226 35403621 -192120957 + MLT1A2 LTR MaLR 1 364 -10 222 44 44 22 chr3 35403655 35403700 -192120878 + (TA)n Simple_repeat Simple_repeat 1 46 0 867 224 52 56 chr3 35403711 35403997 -192120581 + L1ME3A LINE L1 5860 6144 -26 303 285 70 0 chr3 35404027 35404199 -192120379 + L1M4 LINE L1 5214 5397 -749 385 300 62 12 chr3 35404248 35404408 -192120170 + MIR SINE MIR 81 248 -14 31 82 0 0 chr3 35404654 35404727 -192119851 + AT_rich Low_complexity Low_complexity 1 73 0 1822 162 51 6 chr3 35404859 35405193 -192119385 + L1MC1 LINE L1 5985 6333 0 1090 136 0 0 chr3 35405625 35405787 -192118791 + AluSg/x SINE Alu 146 307 -3 1841 153 27 17 chr3 35406000 35406295 -192118283 + AluJo SINE Alu 2 299 -13 25 65 0 0 chr3 35406340 35406386 -192118192 + AT_rich Low_complexity Low_complexity 1 46 0 2379 89 0 10 chr3 35406445 35406759 -192117819 + AluSx SINE Alu 1 311 -1 359 327 20 20 chr3 35407794 35407944 -192116634 - L2 LINE L2 0 3272 3123 621 251 112 18 chr3 35408206 35408429 -192116149 - MIR SINE MIR -3 259 16 244 255 0 0 chr3 35408772 35408823 -192115755 + L2 LINE L2 3219 3269 -3 454 273 70 0 chr3 35408832 35408960 -192115618 - LTR16C LTR ERVL 0 491 355 1709 182 20 0 chr3 35408960 35409257 -192115321 + AluJb SINE Alu 1 303 -9 599 259 184 9 chr3 35409260 35409488 -192115090 - MER57B LTR ERV1 -165 269 2 241 246 0 31 chr3 35409674 35409739 -192114839 + GA-rich Low_complexity Low_complexity 3 65 0 2313 76 31 0 chr3 35410625 35410916 -192113662 + AluY SINE Alu 1 300 -11 426 306 126 10 chr3 35411598 35411621 -192112957 + MIR SINE MIR 1 20 -242 1812 172 47 0 chr3 35411621 35411917 -192112661 + AluJo SINE Alu 1 310 -2 426 306 126 10 chr3 35411917 35412092 -192112486 + MIR SINE MIR 20 222 -40 256 169 89 202 chr3 35412649 35412729 -192111849 + L1M4b LINE L1 11 74 -6785 1706 130 20 0 chr3 35412729 35412976 -192111602 + AluJo SINE Alu 36 287 -25 256 169 89 202 chr3 35412976 35413019 -192111559 + L1M4b LINE L1 74 120 -6739 2357 67 40 0 chr3 35413019 35413317 -192111261 + AluY SINE Alu 1 310 -1 869 226 44 67 chr3 35413334 35413604 -192110974 + L1M4b LINE L1 104 367 -6492 1993 134 0 0 chr3 35413751 35414019 -192110559 - AluSg SINE Alu -42 268 1 187 310 46 23 chr3 35414745 35414832 -192109746 + MIR3 SINE MIR 98 186 -22 214 328 171 26 chr3 35415005 35415386 -192109192 - L2 LINE L2 -468 2846 2411 519 214 0 10 chr3 35415424 35415522 -192109056 + AluSp SINE Alu 113 209 -104 1290 181 107 65 chr3 35415522 35415954 -192108624 + LTR7 LTR ERV1 1 450 0 2840 154 22 66 chr3 35415954 35416603 -192107975 + HERVH LTR ERV1 1 620 -7093 * 12037 111 7 29 chr3 35416591 35418448 -192106130 + HERVH LTR ERV1 756 2571 -5142 3478 102 12 6 chr3 35418436 35418935 -192105643 + HERVH LTR ERV1 5318 5819 -1894 * 2562 103 18 13 chr3 35418935 35419323 -192105255 + HERVH LTR ERV1 7324 7713 0 1291 183 109 67 chr3 35419323 35419755 -192104823 + LTR7 LTR ERV1 1 450 0 1347 160 44 0 chr3 35419755 35419980 -192104598 + AluJo SINE Alu 70 304 -8 366 298 63 121 chr3 35420109 35420538 -192104040 + MLT1K LTR MaLR 180 583 -5 368 275 63 7 chr3 35420547 35420689 -192103889 - L2 LINE L2 -898 2416 2267 448 363 50 40 chr3 35420703 35420757 -192103821 - L3 LINE CR1 -910 667 615 1834 172 0 13 chr3 35420757 35421059 -192103519 + AluJb SINE Alu 4 301 -11 448 363 50 40 chr3 35421059 35421403 -192103175 - L3 LINE CR1 -962 615 265 785 71 0 0 chr3 35421468 35421566 -192103012 + HY3 scRNA scRNA 2 99 -2 400 243 98 35 chr3 35421858 35422031 -192102547 + MIR SINE MIR 47 230 -32 189 107 0 0 chr3 35422039 35422067 -192102511 + (T)n Simple_repeat Simple_repeat 1 28 0 1540 165 0 0 chr3 35422083 35422313 -192102265 - AluJb SINE Alu -82 230 1 432 278 120 0 chr3 35422338 35422446 -192102132 + AluSq/x SINE Alu 1 121 -181 502 154 13 0 chr3 35422457 35422535 -192102043 - MER51A LTR ERV1 -87 547 469 21 36 0 0 chr3 35422542 35422570 -192102008 + AT_rich Low_complexity Low_complexity 1 28 0 2252 118 0 3 chr3 35422955 35423251 -192101327 - AluSq SINE Alu -18 295 1 802 354 9 121 chr3 35423254 35423593 -192100985 - AluSx SINE Alu -1 301 1 195 354 40 0 chr3 35423736 35423835 -192100743 + L2 LINE L2 3169 3271 -1 271 219 67 84 chr3 35424092 35424211 -192100367 + MLT1J LTR MaLR 11 127 -384 376 258 0 21 chr3 35424683 35424780 -192099798 + HERVL32 LTR ERVL 3323 3417 -1 2483 77 3 13 chr3 35424780 35425092 -192099486 + AluSp SINE Alu 1 309 -4 1839 132 108 35 chr3 35425109 35425451 -192099127 + LTR32 LTR ERVL 13 379 -92 2306 94 0 10 chr3 35425461 35425770 -192098808 + AluSx SINE Alu 1 306 -6 240 234 13 39 chr3 35425840 35425917 -192098661 + GA-rich Low_complexity Low_complexity 1 75 0 756 125 0 76 chr3 35425969 35426113 -192098465 + FLAM_C SINE Alu 11 143 0 225 119 0 0 chr3 35426304 35426346 -192098232 + (TG)n Simple_repeat Simple_repeat 2 43 0 2316 98 3 3 chr3 35426369 35426675 -192097903 + AluSq SINE Alu 1 306 -7 1228 184 55 122 chr3 35426735 35426926 -192097652 + MLT2C2 LTR ERVL 52 254 -210 2269 91 0 7 chr3 35426926 35427234 -192097344 + AluSg SINE Alu 1 306 0 1228 184 55 122 chr3 35427234 35427434 -192097144 + MLT2C2 LTR ERVL 254 415 -49 450 53 0 0 chr3 35427434 35427491 -192097087 + (CA)n Simple_repeat Simple_repeat 1 57 0 1228 184 55 122 chr3 35427491 35427533 -192097045 + MLT2C2 LTR ERVL 415 458 -6 325 245 0 0 chr3 35427541 35427594 -192096984 - MER45 DNA AcHobo -900 53 1 1083 198 76 64 chr3 35427939 35428268 -192096310 - MER46C DNA MER2_type -1 337 5 2286 114 3 0 chr3 35428773 35429081 -192095497 - AluSc SINE Alu 0 309 1 1563 180 7 20 chr3 35429647 35429942 -192094636 - AluJo SINE Alu -21 291 1 2191 112 0 3 chr3 35430045 35430341 -192094237 + AluSx SINE Alu 1 295 -17 186 43 0 0 chr3 35430700 35430723 -192093855 + (GA)n Simple_repeat Simple_repeat 2 24 0 367 219 104 0 chr3 35430865 35430961 -192093617 + MER53 DNA DNA 2 107 -82 227 354 107 41 chr3 35431016 35431593 -192092985 - L2 LINE L2 -2 3270 2656 1543 253 28 39 chr3 35431784 35432278 -192092300 - LTR16C LTR ERVL -2 489 1 542 308 59 45 chr3 35432312 35432666 -192091912 - L3 LINE CR1 -72 1505 1147 187 250 0 0 chr3 35433225 35433269 -192091309 - MIR SINE MIR -60 148 105 924 289 124 36 chr3 35433324 35433537 -192091041 + MLT1K LTR MaLR 10 203 -385 180 0 0 0 chr3 35433537 35433557 -192091021 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 924 289 124 36 chr3 35433557 35433568 -192091010 + MLT1K LTR MaLR 203 212 -376 2062 124 28 0 chr3 35433568 35433850 -192090728 - AluSg SINE Alu -20 290 1 924 289 124 36 chr3 35433850 35434091 -192090487 + MLT1K LTR MaLR 212 517 -71 231 288 27 0 chr3 35434101 35434174 -192090404 + CT-rich Low_complexity Low_complexity 5 79 0 2370 174 24 9 chr3 35434357 35434777 -192089801 + MSTB LTR MaLR 1 426 0 2218 113 3 0 chr3 35434829 35435122 -192089456 - AluSg SINE Alu -16 294 1 431 271 16 39 chr3 35435131 35435260 -192089318 - MIR SINE MIR -67 141 16 298 206 55 27 chr3 35435328 35435401 -192089177 + MIR3 SINE MIR 106 180 -28 183 129 0 0 chr3 35435505 35435536 -192089042 + (CA)n Simple_repeat Simple_repeat 1 31 0 2217 109 0 10 chr3 35435988 35436281 -192088297 - AluSg1 SINE Alu -18 291 2 28 29 0 0 chr3 35436281 35436316 -192088262 + AT_rich Low_complexity Low_complexity 1 35 0 189 0 0 0 chr3 35436339 35436360 -192088218 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1923 160 0 0 chr3 35436363 35436650 -192087928 - AluSx SINE Alu -25 287 1 1628 204 83 39 chr3 35436848 35437259 -192087319 - MER21A LTR ERV1 0 931 503 1248 184 18 9 chr3 35437332 35437555 -192087023 - MER21B LTR ERV1 -638 225 1 1628 153 10 37 chr3 35438068 35438362 -192086216 - AluJb SINE Alu -18 294 9 248 205 0 58 chr3 35438738 35438963 -192085615 + AluJo SINE Alu 2 291 -11 436 225 62 62 chr3 35439701 35439879 -192084699 + MIR SINE MIR 32 209 -53 2214 124 0 3 chr3 35440068 35440367 -192084211 + AluSx SINE Alu 1 298 -14 1988 121 13 20 chr3 35440396 35440694 -192083884 + AluSx SINE Alu 1 296 -16 626 68 11 0 chr3 35440810 35440898 -192083680 + (TTTC)n Simple_repeat Simple_repeat 4 92 0 2158 110 17 3 chr3 35441009 35441300 -192083278 - AluSq SINE Alu -18 295 1 277 269 25 42 chr3 35441374 35441493 -192083085 - LTR67 LTR ERVL 0 557 441 1869 140 63 3 chr3 35442136 35442422 -192082156 - AluJb SINE Alu -9 303 1 1751 141 8 4 chr3 35442433 35442695 -192081883 - AluSx SINE Alu -17 295 33 449 129 0 0 chr3 35442695 35442757 -192081821 - AluS SINE Alu -245 67 6 423 248 35 35 chr3 35442773 35442886 -192081692 + MLT1J2 LTR MaLR 87 199 -251 2318 112 0 3 chr3 35442888 35443201 -192081377 - AluSx SINE Alu 0 312 1 1240 124 0 0 chr3 35443211 35443388 -192081190 - AluSq SINE Alu 0 313 137 2287 111 3 0 chr3 35443408 35443705 -192080873 - AluSq SINE Alu -15 298 1 367 360 37 0 chr3 35443862 35443998 -192080580 + MIR3 SINE MIR 14 154 -54 243 227 91 0 chr3 35444763 35444829 -192079749 - L2 LINE L2 -1 3312 3241 284 45 0 0 chr3 35444877 35444921 -192079657 - AluY SINE Alu 0 302 259 1232 198 78 30 chr3 35445022 35445325 -192079253 + AluJo SINE Alu 32 347 0 186 253 36 60 chr3 35445543 35445626 -192078952 + MIR3 SINE MIR 120 200 -8 1260 218 90 96 chr3 35446510 35447037 -192077541 + L1MC5 LINE L1 7174 7697 -264 297 0 0 0 chr3 35447037 35447070 -192077508 + (TA)n Simple_repeat Simple_repeat 2 34 0 1260 218 90 96 chr3 35447070 35447305 -192077273 + L1MC5 LINE L1 7697 7932 -29 279 311 104 16 chr3 35447408 35447591 -192076987 - MIR SINE MIR -57 205 7 1857 84 21 0 chr3 35447620 35447857 -192076721 + AluSx SINE Alu 5 246 -66 273 57 0 0 chr3 35447863 35447898 -192076680 + (T)n Simple_repeat Simple_repeat 1 35 0 180 0 0 0 chr3 35452129 35452149 -192072429 + (T)n Simple_repeat Simple_repeat 1 20 0 360 0 0 0 chr3 35456283 35456323 -192068255 + (A)n Simple_repeat Simple_repeat 1 40 0 206 205 0 0 chr3 35457366 35457405 -192067173 + (CCG)n Simple_repeat Simple_repeat 2 40 0 336 277 107 103 chr3 35457410 35457839 -192066739 - L1M2 LINE L1 -5891 958 528 306 73 0 0 chr3 35458609 35458650 -192065928 + (T)n Simple_repeat Simple_repeat 1 41 0 204 132 79 0 chr3 35460950 35460988 -192063590 + (CATTA)n Simple_repeat Simple_repeat 4 44 0 220 186 0 0 chr3 35462912 35462955 -192061623 + (CAT)n Simple_repeat Simple_repeat 3 45 0 339 281 38 16 chr3 35463850 35464010 -192060568 + MIR SINE MIR 21 232 -30 206 298 82 64 chr3 35464040 35464211 -192060367 - L2 LINE L2 -17 3255 3082 376 270 26 0 chr3 35465010 35465125 -192059453 - MIR SINE MIR -106 156 39 539 322 19 19 chr3 35465376 35465587 -192058991 - MIR SINE MIR -4 258 48 24 32 0 0 chr3 35466557 35466588 -192057990 + AT_rich Low_complexity Low_complexity 1 31 0 212 254 63 32 chr3 35467501 35467564 -192057014 - L2 LINE L2 -15 3257 3193 948 179 6 0 chr3 35467643 35467805 -192056773 + MER5B DNA MER1_type 1 163 -15 369 203 214 16 chr3 35468205 35468314 -192056264 - HsTC2 DNA Tc2 -4 1894 1808 1954 118 20 49 chr3 35468314 35468618 -192055960 - AluSx SINE Alu -17 295 1 369 203 214 16 chr3 35468618 35468690 -192055888 - HsTC2 DNA Tc2 -90 1808 1677 417 277 92 0 chr3 35468698 35468817 -192055761 - HsTC2 DNA Tc2 -1763 135 6 493 283 29 29 chr3 35468838 35469011 -192055567 - MIR SINE MIR -41 221 49 2017 243 35 10 chr3 35469368 35469886 -192054692 - L1ME3A LINE L1 -26 6144 5614 286 170 66 0 chr3 35470340 35470446 -192054132 + (TA)n Simple_repeat Simple_repeat 1 113 0 276 310 52 0 chr3 35470884 35471000 -192053578 + MLT1L LTR MaLR 364 485 -130 355 288 125 46 chr3 35471197 35471551 -192053027 - L1MC/D LINE L1 -387 5734 5356 344 297 118 49 chr3 35471758 35472004 -192052574 - L1MC/D LINE L1 -1149 4997 4735 1651 185 0 4 chr3 35472068 35472349 -192052229 - AluJb SINE Alu -32 280 1 1388 171 70 49 chr3 35472405 35472691 -192051887 + AluSg SINE Alu 1 292 -18 1910 193 11 45 chr3 35472890 35473264 -192051314 - MLT1A1 LTR MaLR -4 361 1 2333 85 20 0 chr3 35473395 35473688 -192050890 + AluSg SINE Alu 1 299 -11 272 27 27 0 chr3 35473688 35473725 -192050853 + (TA)n Simple_repeat Simple_repeat 2 39 0 1055 217 35 0 chr3 35474313 35474543 -192050035 + Charlie1 DNA MER1_type 2 239 -2522 764 187 27 0 chr3 35474517 35474667 -192049911 + Charlie1 DNA MER1_type 2608 2761 0 * 1602 165 46 11 chr3 35474748 35475033 -192049545 - AluJo SINE Alu -17 295 1 2268 89 7 14 chr3 35475115 35475408 -192049170 - AluSx SINE Alu -21 291 1 199 256 38 128 chr3 35475743 35475876 -192048702 + L2 LINE L2 2703 2823 -491 1816 113 0 4 chr3 35476179 35476426 -192048152 - AluSx SINE Alu -66 246 1 2460 71 0 0 chr3 35476877 35477188 -192047390 - AluY SINE Alu 0 311 1 403 305 0 38 chr3 35477313 35477444 -192047134 + L2 LINE L2 3188 3313 0 313 85 21 0 chr3 35477765 35477812 -192046766 - MLT2C2 LTR ERVL 0 464 417 275 330 50 0 chr3 35478158 35478258 -192046320 - L2 LINE L2 -6 3266 3162 1263 253 14 0 chr3 35478562 35478679 -192045899 + AluJo SINE Alu 1 115 -197 186 43 0 0 chr3 35478679 35478702 -192045876 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1263 253 14 0 chr3 35478702 35478861 -192045717 + AluJo SINE Alu 115 281 -31 2320 92 3 0 chr3 35478981 35479273 -192045305 - AluSp SINE Alu -20 293 1 1809 130 0 48 chr3 35479687 35480002 -192044576 + AluSx SINE Alu 1 300 -12 24 0 0 0 chr3 35480097 35480121 -192044457 + AT_rich Low_complexity Low_complexity 1 24 0 273 182 136 0 chr3 35480402 35480468 -192044110 - L1M4 LINE L1 -1454 4692 4618 232 192 0 39 chr3 35480607 35480659 -192043919 - L1M4 LINE L1 -1519 4627 4578 2051 128 7 10 chr3 35480969 35481266 -192043312 - AluSx SINE Alu -16 296 1 728 333 80 22 chr3 35481284 35481847 -192042731 - L2 LINE L2 0 3313 2706 3682 32 0 0 chr3 35481847 35482253 -192042325 + L1PA3 LINE L1 5747 6152 -3 359 351 72 14 chr3 35482322 35482544 -192042034 - L2 LINE L2 -596 2718 2484 250 174 110 64 chr3 35483496 35483605 -192040973 - L1ME LINE L1 -703 5463 5350 2415 71 0 46 chr3 35483623 35483948 -192040630 + AluSg SINE Alu 1 310 0 24 0 0 0 chr3 35483991 35484015 -192040563 + AT_rich Low_complexity Low_complexity 1 24 0 1251 122 0 6 chr3 35484187 35484367 -192040211 + AluSc SINE Alu 118 296 -13 350 167 0 15 chr3 35484367 35484433 -192040145 + MLT1A1 LTR MaLR 301 365 0 1768 189 79 0 chr3 35484513 35484904 -192039674 + L1MC3 LINE L1 7364 7785 0 1072 245 81 81 chr3 35485411 35485441 -192039137 + MLT1H1 LTR MaLR 32 61 -494 1635 174 40 23 chr3 35485441 35485740 -192038838 + AluJo SINE Alu 1 304 -8 1072 245 81 81 chr3 35485740 35486231 -192038347 + MLT1H1 LTR MaLR 60 553 -2 23 0 0 0 chr3 35486575 35486598 -192037980 + AT_rich Low_complexity Low_complexity 1 23 0 314 205 13 0 chr3 35486647 35486725 -192037853 + GA-rich Low_complexity Low_complexity 2 80 0 734 303 25 25 chr3 35486811 35487049 -192037529 - MIR SINE MIR -13 249 12 203 0 0 36 chr3 35487099 35487127 -192037451 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 319 250 175 50 chr3 35487344 35487537 -192037041 + MIR SINE MIR 18 235 -27 264 313 52 10 chr3 35487547 35487643 -192036935 + MIR SINE MIR 8 107 -155 1135 211 87 13 chr3 35487831 35488130 -192036448 - L1ME1 LINE L1 0 6166 5846 366 276 105 0 chr3 35489064 35489169 -192035409 - L2 LINE L2 -1 3312 3197 258 254 0 0 chr3 35490849 35490904 -192033674 - L2 LINE L2 -7 3306 3252 258 330 11 11 chr3 35491205 35491299 -192033279 - MIR SINE MIR -110 152 59 220 281 79 53 chr3 35491478 35491592 -192032986 + MIR SINE MIR 56 172 -90 1472 190 7 31 chr3 35491838 35492155 -192032423 + AluJb SINE Alu 1 310 0 1991 112 52 3 chr3 35492273 35492559 -192032019 + AluSq SINE Alu 1 300 -13 2351 180 0 2 chr3 35492954 35493354 -192031224 - L1MB3 LINE L1 -11 6172 5774 2542 244 26 10 chr3 35493354 35493980 -192030598 + L1ME3A LINE L1 5507 6142 -28 1210 86 0 0 chr3 35494020 35494206 -192030372 + AluSc SINE Alu 133 318 0 1972 134 0 3 chr3 35494219 35494523 -192030055 + AluSx SINE Alu 1 303 0 1577 175 4 26 chr3 35494854 35495122 -192029456 + AluJo SINE Alu 2 263 -49 24 0 0 0 chr3 35495137 35495161 -192029417 + AT_rich Low_complexity Low_complexity 1 24 0 337 341 131 28 chr3 35495208 35495384 -192029194 - MIR3 SINE MIR -7 201 8 1846 203 157 13 chr3 35495468 35495921 -192028657 + MLT1H LTR MaLR 30 547 -2 191 294 75 81 chr3 35496930 35497090 -192027488 - L2 LINE L2 -1 3312 3154 2030 152 7 0 chr3 35497137 35497447 -192027131 - AluSx SINE Alu 0 312 1 13652 143 24 6 chr3 35497725 35499858 -192024720 + Tigger7 DNA MER2_type 2 2173 -314 903 179 19 0 chr3 35499858 35500014 -192024564 - FRAM SINE Alu -17 159 1 1468 176 0 30 chr3 35500114 35500381 -192024197 - AluJb SINE Alu -53 259 1 1892 106 92 13 chr3 35500381 35500684 -192023894 + Tigger7 DNA MER2_type 2161 2487 0 1650 191 35 60 chr3 35500703 35501154 -192023424 - LTR56 LTR ERV1 0 445 6 204 135 0 0 chr3 35501982 35502019 -192022559 + (TGG)n Simple_repeat Simple_repeat 2 38 0 2087 122 34 0 chr3 35502297 35502592 -192021986 + AluSx SINE Alu 1 305 -7 908 209 33 19 chr3 35503338 35503549 -192021029 - MER20 DNA MER1_type -5 214 1 2165 113 7 7 chr3 35503653 35503954 -192020624 - AluSp SINE Alu -1 312 12 230 338 86 13 chr3 35504866 35505017 -192019561 + MER5B DNA MER1_type 1 162 -16 574 267 41 0 chr3 35505076 35505248 -192019330 - MIR SINE MIR -16 246 68 1025 256 65 31 chr3 35506677 35506913 -192017665 - MER102b DNA MER1_type -1096 332 81 1386 180 113 11 chr3 35506913 35507077 -192017501 - AluJo SINE Alu 0 312 166 360 0 0 0 chr3 35507077 35507117 -192017461 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 1386 180 113 11 chr3 35507117 35507235 -192017343 - AluJo SINE Alu -146 166 1 1025 256 65 31 chr3 35507235 35507319 -192017259 - MER102b DNA MER1_type -1347 81 1 2013 123 3 3 chr3 35507335 35507620 -192016958 - AluSx SINE Alu -20 292 8 540 341 19 0 chr3 35507900 35508105 -192016473 - MIR SINE MIR -26 236 28 2276 108 0 0 chr3 35508148 35508443 -192016135 + AluSc SINE Alu 1 295 -14 1537 183 60 7 chr3 35508650 35508935 -192015643 + AluJo SINE Alu 1 300 -12 829 186 21 0 chr3 35509739 35509879 -192014699 + AluJo SINE Alu 40 182 -130 6344 42 16 0 chr3 35510781 35511535 -192013043 - L1PA5 LINE L1 -7 6147 5382 519 256 0 30 chr3 35511798 35511931 -192012647 + L2 LINE L2 3185 3313 0 521 291 18 9 chr3 35512391 35512554 -192012024 - MIR SINE MIR -46 162 3 21 57 0 0 chr3 35514332 35514367 -192010211 + AT_rich Low_complexity Low_complexity 1 35 0 552 323 74 3 chr3 35514600 35514885 -192009693 + L2 LINE L2 2297 2601 -713 2123 113 40 0 chr3 35515942 35516242 -192008336 + AluSp SINE Alu 2 313 0 219 183 84 84 chr3 35516342 35516413 -192008165 - L3 LINE CR1 -257 1320 1250 278 100 0 0 chr3 35517689 35517729 -192006849 + L1ME4a LINE L1 5971 6010 -111 216 67 0 0 chr3 35517756 35517786 -192006792 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 474 84 28 0 chr3 35517837 35517908 -192006670 - L1PB4 LINE L1 0 6156 6084 236 165 76 13 chr3 35517922 35518001 -192006577 + (TATAA)n Simple_repeat Simple_repeat 2 85 0 36 70 0 0 chr3 35519029 35519100 -192005478 + AT_rich Low_complexity Low_complexity 1 71 0 1854 111 55 4 chr3 35519108 35519379 -192005199 - AluSg SINE Alu -25 285 1 2147 67 41 0 chr3 35519382 35519694 -192004884 - AluY SINE Alu 0 323 1 42771 43 26 2 chr3 35519704 35525704 -191998874 - L1PA7 LINE L1 -5 6149 2 243 0 0 0 chr3 35525993 35526020 -191998558 + (T)n Simple_repeat Simple_repeat 1 27 0 235 233 56 44 chr3 35526135 35526225 -191998353 + MLT1I LTR MaLR 122 212 -197 387 0 0 0 chr3 35526372 35526415 -191998163 + (A)n Simple_repeat Simple_repeat 1 43 0 680 179 173 0 chr3 35527437 35527605 -191996973 + MIR SINE MIR 58 254 -8 1277 280 103 0 chr3 35528142 35528549 -191996029 - LTR16C LTR ERVL 0 491 43 294 153 0 69 chr3 35528637 35528709 -191995869 - L1ME4a LINE L1 -105 6016 5950 2023 154 0 10 chr3 35529310 35529621 -191994957 + AluJb SINE Alu 1 308 -4 2633 207 39 25 chr3 35529833 35530467 -191994111 + L1MC4 LINE L1 7228 7870 -172 386 250 93 43 chr3 35530628 35530768 -191993810 + L1ME4a LINE L1 5946 6092 -29 786 108 0 0 chr3 35530952 35531054 -191993524 - AluY SINE Alu -16 295 194 4237 270 101 32 chr3 35531116 35531254 -191993324 + HAL1 LINE L1 230 357 -2150 2015 125 54 65 chr3 35531254 35531622 -191992956 - THE1B LTR MaLR 0 364 1 4237 270 101 32 chr3 35531622 35532331 -191992247 + HAL1 LINE L1 357 1016 -1491 2804 26 0 0 chr3 35532331 35532642 -191991936 + AluYb8 SINE Alu 1 311 -7 4237 270 101 32 chr3 35532642 35533594 -191990984 + HAL1 LINE L1 1016 2166 -341 2265 108 0 10 chr3 35533594 35533908 -191990670 + AluSx SINE Alu 1 311 -1 4237 270 101 32 chr3 35533908 35533979 -191990599 + HAL1 LINE L1 2166 2231 -276 691 147 0 0 chr3 35534035 35534137 -191990441 + AluSg/x SINE Alu 199 300 -10 261 0 0 0 chr3 35534273 35534302 -191990276 + (ATTG)n Simple_repeat Simple_repeat 1 29 0 2987 71 3 3 chr3 35534302 35534670 -191989908 - L1PA7 LINE L1 -17 6137 5770 535 275 81 40 chr3 35534680 35535027 -191989551 + MLT1L LTR MaLR 144 536 -79 1487 220 20 43 chr3 35535404 35535754 -191988824 + MLT1A1 LTR MaLR 1 342 -23 780 179 8 0 chr3 35535762 35535885 -191988693 - AluJb SINE Alu -187 125 2 304 211 0 0 chr3 35535888 35535940 -191988638 + MLT1A1 LTR MaLR 323 374 0 232 133 33 0 chr3 35536603 35536663 -191987915 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 225 242 48 0 chr3 35536842 35536904 -191987674 + MLT1L LTR MaLR 549 613 -2 996 172 0 0 chr3 35538049 35538206 -191986372 + FRAM SINE Alu 8 164 -12 444 308 27 36 chr3 35538321 35538542 -191986036 + L2 LINE L2 2588 2806 -508 2005 201 80 30 chr3 35538655 35539092 -191985486 + MLT1C LTR MaLR 7 465 -2 289 297 201 10 chr3 35539096 35539305 -191985273 + L2 LINE L2 2976 3224 -48 191 250 125 0 chr3 35539493 35539549 -191985029 - MIR3 SINE MIR -31 177 115 1095 83 0 0 chr3 35541044 35541176 -191983402 + AluSp SINE Alu 1 132 -181 2252 122 0 0 chr3 35541178 35541481 -191983097 + AluSx SINE Alu 1 303 -9 1846 110 21 11 chr3 35541644 35541968 -191982610 + AluSp SINE Alu 1 327 0 563 279 118 27 chr3 35542239 35542501 -191982077 - LTR50 LTR ERVL 0 795 510 565 241 74 42 chr3 35542516 35542732 -191981846 - LTR50 LTR ERVL -569 226 4 822 262 53 17 chr3 35542758 35543093 -191981485 - MLT1I LTR MaLR -9 400 18 233 294 28 64 chr3 35543574 35543683 -191980895 + L2 LINE L2 3197 3301 -12 2009 163 0 3 chr3 35544231 35544537 -191980041 - AluJb SINE Alu -7 305 1 400 302 99 6 chr3 35544792 35544974 -191979604 - L1MC4a LINE L1 -1925 5883 5685 198 0 0 0 chr3 35545417 35545439 -191979139 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2064 137 0 13 chr3 35545531 35545838 -191978740 - AluSx SINE Alu -9 303 1 1790 164 3 3 chr3 35546306 35546648 -191977930 - AluJb SINE Alu 0 342 1 24 0 0 0 chr3 35546657 35546681 -191977897 + AT_rich Low_complexity Low_complexity 1 24 0 335 281 111 20 chr3 35547030 35547183 -191977395 - MIR SINE MIR -93 169 3 306 0 0 0 chr3 35548496 35548530 -191976048 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2154 128 0 7 chr3 35548709 35549014 -191975564 - AluSx SINE Alu -9 303 1 1851 179 3 6 chr3 35550231 35550544 -191974034 - AluJo SINE Alu 0 312 1 273 29 0 0 chr3 35550599 35550633 -191973945 + (TTA)n Simple_repeat Simple_repeat 3 36 0 6687 31 0 0 chr3 35550633 35551365 -191973213 - L1PA3 LINE L1 -18 6137 5406 511 250 111 14 chr3 35551505 35551649 -191972929 - MER115 DNA AcHobo -485 208 51 183 200 0 0 chr3 35551649 35551689 -191972889 - MER5C DNA MER1_type -1 323 284 417 287 0 39 chr3 35551778 35551907 -191972671 - MER5C DNA MER1_type -200 124 1 626 304 51 26 chr3 35552152 35552309 -191972269 - Tigger8 DNA MER2_type -66 600 449 2424 87 6 0 chr3 35552309 35552620 -191971958 + AluSp SINE Alu 1 313 0 626 304 51 26 chr3 35552620 35552774 -191971804 - Tigger8 DNA MER2_type -217 449 281 383 145 12 0 chr3 35552864 35552947 -191971631 + (TCTA)n Simple_repeat Simple_repeat 3 86 0 1318 267 56 3 chr3 35553991 35554350 -191970228 + LTR16C LTR ERVL 114 491 0 2376 112 0 0 chr3 35554396 35554708 -191969870 + AluSx SINE Alu 1 312 0 680 276 106 82 chr3 35554821 35555245 -191969333 - MLT1J2 LTR MaLR -14 436 3 38 61 0 0 chr3 35555292 35555358 -191969220 + AT_rich Low_complexity Low_complexity 1 66 0 417 231 39 10 chr3 35555358 35555462 -191969116 + L2 LINE L2 3163 3269 -3 1080 279 88 9 chr3 35555906 35556325 -191968253 - L1ME3A LINE L1 -5 6165 5714 1633 188 3 11 chr3 35556488 35556770 -191967808 + AluJb SINE Alu 3 282 -30 333 118 0 0 chr3 35556774 35556825 -191967753 + (CAAA)n Simple_repeat Simple_repeat 2 52 0 752 271 62 60 chr3 35556864 35557329 -191967249 - MLT1H LTR MaLR -7 542 77 818 280 102 18 chr3 35558286 35558561 -191966017 + LTR16C LTR ERVL 77 374 -117 2047 217 62 2 chr3 35558601 35559099 -191965479 - MER74A LTR ERVL -30 528 1 368 219 38 19 chr3 35559103 35559208 -191965370 + LTR16C LTR ERVL 381 487 -4 243 329 0 0 chr3 35559417 35559496 -191965082 - MER63 DNA MER1_type -5 1056 978 526 156 138 0 chr3 35559498 35559607 -191964971 - MER63 DNA MER1_type -86 750 1 257 344 89 45 chr3 35559636 35559793 -191964785 - MIR3 SINE MIR -4 204 41 2307 111 0 3 chr3 35560656 35560963 -191963615 - AluSq SINE Alu -2 311 6 256 224 0 0 chr3 35561006 35561064 -191963514 + MLT1A1 LTR MaLR 1 58 -307 730 120 0 0 chr3 35561246 35561363 -191963215 + (CA)n Simple_repeat Simple_repeat 1 117 0 580 300 92 4 chr3 35561791 35562031 -191962547 - MIR SINE MIR 0 262 2 202 211 0 0 chr3 35562236 35562274 -191962304 + (CAATT)n Simple_repeat Simple_repeat 5 42 0 608 285 186 16 chr3 35562885 35563267 -191961311 + LTR16A LTR ERVL 2 448 -2 323 322 49 35 chr3 35563277 35563420 -191961158 - MIR3 SINE MIR -59 149 5 376 306 72 17 chr3 35563672 35563852 -191960726 + L2 LINE L2 3124 3313 0 293 312 33 33 chr3 35564733 35564893 -191959685 + MIR SINE MIR 31 192 -63 1552 163 222 28 chr3 35564965 35565424 -191959154 + LTR10A LTR ERV1 1 548 -61 1459 269 22 59 chr3 35565452 35565962 -191958616 + LTR16C LTR ERVL 1 491 0 261 0 0 0 chr3 35566144 35566187 -191958391 + (CA)n Simple_repeat Simple_repeat 1 72 0 261 0 0 0 chr3 35566187 35566216 -191958362 + (CA)n Simple_repeat Simple_repeat 1 29 0 2390 97 6 0 chr3 35566580 35566891 -191957687 - AluSp SINE Alu 0 313 1 278 356 14 68 chr3 35567125 35567344 -191957234 - MIR SINE MIR -48 214 8 325 280 30 20 chr3 35567970 35568070 -191956508 - L2 LINE L2 -2 3311 3211 310 242 44 21 chr3 35568132 35568301 -191956277 - LTR33A LTR ERVL 0 523 380 738 306 160 22 chr3 35568717 35569388 -191955190 - L2 LINE L2 -215 3057 2298 322 252 10 29 chr3 35569585 35569688 -191954890 + CT-rich Low_complexity Low_complexity 2 102 0 1160 238 75 4 chr3 35570317 35570598 -191953980 - MLT1G1 LTR MaLR -294 301 1 6144 95 6 3 chr3 35570709 35572166 -191952412 - L1PA12 LINE L1 -1 6167 4713 2088 202 37 55 chr3 35573023 35573587 -191950991 - MLT2B3 LTR ERVL 0 554 1 303 284 85 34 chr3 35573711 35573887 -191950691 + L2 LINE L2 3127 3311 -2 259 191 64 11 chr3 35574158 35574252 -191950326 + L1ME4a LINE L1 6023 6121 0 1635 185 24 0 chr3 35574305 35574592 -191949986 - AluJo SINE Alu -16 296 3 802 148 0 63 chr3 35574819 35574961 -191949617 - FLAM_C SINE Alu 0 133 1 25 0 0 0 chr3 35575157 35575182 -191949396 + AT_rich Low_complexity Low_complexity 1 25 0 35 41 0 0 chr3 35575713 35575762 -191948816 + AT_rich Low_complexity Low_complexity 1 49 0 319 305 79 38 chr3 35575864 35576377 -191948201 - L1ME4a LINE L1 -21 6100 5365 1039 278 94 59 chr3 35576536 35577071 -191947507 - L2 LINE L2 -2 3311 2759 199 242 32 16 chr3 35577074 35577136 -191947442 - L2 LINE L2 -661 2653 2591 367 333 101 0 chr3 35577772 35577910 -191946668 + L2 LINE L2 3162 3313 0 995 285 97 8 chr3 35578116 35578477 -191946101 + LTR16C LTR ERVL 99 491 0 251 256 39 26 chr3 35578505 35578583 -191945995 + MIR SINE MIR 165 243 -19 275 346 0 0 chr3 35579394 35579472 -191945106 + L2 LINE L2 3186 3263 -9 296 54 0 0 chr3 35579562 35579599 -191944979 + U2 snRNA snRNA 1 37 -151 186 303 15 15 chr3 35579787 35579853 -191944725 - L2 LINE L2 -3054 260 195 967 57 0 0 chr3 35580262 35580386 -191944192 - L1PB2 LINE L1 -2 6149 6026 379 282 38 0 chr3 35580530 35580661 -191943917 + MIR3 SINE MIR 65 200 -8 342 288 23 23 chr3 35580927 35581059 -191943519 - L1ME4a LINE L1 -1054 5092 4961 281 291 34 34 chr3 35581392 35581540 -191943038 - L1MC/D LINE L1 -2038 5770 5623 795 272 109 27 chr3 35581834 35582165 -191942413 + MLT1J2 LTR MaLR 93 450 0 2608 62 0 0 chr3 35582199 35582505 -191942073 - AluY SINE Alu -5 306 1 306 260 67 29 chr3 35582549 35582653 -191941925 - HAL1b LINE L1 -463 885 778 235 282 88 54 chr3 35582735 35583029 -191941549 - HAL1b LINE L1 -443 905 602 1975 151 24 0 chr3 35583181 35583473 -191941105 + AluJb SINE Alu 4 302 -10 1019 147 0 89 chr3 35583747 35583971 -191940607 - MER2 DNA MER2_type -135 210 7 1626 174 20 30 chr3 35584175 35584473 -191940105 + AluJo SINE Alu 1 295 -17 706 150 8 8 chr3 35585676 35585818 -191938760 + AluJb SINE Alu 173 312 0 289 305 89 28 chr3 35586416 35586589 -191937989 - MIR3 SINE MIR -43 165 6 28 44 0 44 chr3 35586590 35586658 -191937920 + AT_rich Low_complexity Low_complexity 1 65 0 237 268 42 0 chr3 35586777 35586848 -191937730 - MIR SINE MIR -98 164 91 7527 118 158 17 chr3 35588267 35589222 -191935356 - THE1C-int LTR MaLR 0 1580 367 2394 99 0 6 chr3 35589222 35589535 -191935043 - AluY SINE Alu 0 311 1 7527 118 158 17 chr3 35589535 35589963 -191934615 - THE1C-int LTR MaLR -1213 367 1 1438 152 77 88 chr3 35589966 35590342 -191934236 - THE1C LTR MaLR -3 372 1 20282 138 14 8 chr3 35590348 35591038 -191933540 + L1PA11 LINE L1 1644 2328 -3846 1950 139 0 4 chr3 35591038 35591312 -191933266 + AluSx SINE Alu 1 273 -39 228 35 0 0 chr3 35591319 35591348 -191933230 + (CA)n Simple_repeat Simple_repeat 2 30 0 20282 138 14 8 chr3 35591348 35592092 -191932486 + L1PA11 LINE L1 2333 3071 -3103 219 36 0 0 chr3 35592092 35592120 -191932458 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 20282 138 14 8 chr3 35592120 35594796 -191929782 + L1PA11 LINE L1 3071 5794 -380 240 111 0 0 chr3 35594796 35594832 -191929746 + (TA)n Simple_repeat Simple_repeat 2 37 0 20282 138 14 8 chr3 35594832 35595210 -191929368 + L1PA11 LINE L1 5794 6168 -6 626 270 93 31 chr3 35595272 35595498 -191929080 + MIR SINE MIR 23 262 0 180 77 0 0 chr3 35595774 35595800 -191928778 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1532 178 11 21 chr3 35595802 35596083 -191928495 - AluJo SINE Alu -30 282 5 256 77 26 0 chr3 35596242 35596281 -191928297 + MLT1I LTR MaLR 101 140 -269 292 302 164 22 chr3 35596941 35597168 -191927410 - MIR SINE MIR -3 259 3 26 50 0 0 chr3 35597279 35597319 -191927259 + AT_rich Low_complexity Low_complexity 1 40 0 811 200 45 50 chr3 35597760 35597980 -191926598 - MER20 DNA MER1_type 0 219 1 964 176 0 0 chr3 35598031 35598184 -191926394 - FRAM SINE Alu -25 151 1 454 269 107 13 chr3 35598613 35598762 -191925816 - MIR SINE MIR -90 172 10 4194 168 54 35 chr3 35599411 35600689 -191923889 - L1MA8 LINE L1 -11 7240 5940 7917 223 70 36 chr3 35600821 35602635 -191921943 - L1MA8 LINE L1 -1775 5331 3580 1729 202 9 6 chr3 35602635 35602976 -191921602 - MER2 DNA MER2_type 0 344 3 7917 223 70 36 chr3 35602976 35605137 -191919441 - L1MA8 LINE L1 -3526 3580 1041 548 351 134 40 chr3 35605308 35605961 -191918617 - L2 LINE L2 0 3272 2526 392 287 70 0 chr3 35606070 35606185 -191918393 - MIR3 SINE MIR -39 169 47 208 237 0 0 chr3 35606610 35606669 -191917909 + A-rich Low_complexity Low_complexity 1 59 0 2332 207 66 96 chr3 35607015 35607338 -191917240 + MER21B LTR ERV1 1 332 -531 1228 57 131 11 chr3 35607338 35607368 -191917210 - MER107 DNA MER1_type 0 197 172 182 36 0 36 chr3 35607368 35607396 -191917182 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1228 57 131 11 chr3 35607396 35607541 -191917037 - MER107 DNA MER1_type -25 172 1 2332 207 66 96 chr3 35607541 35608054 -191916524 + MER21B LTR ERV1 332 812 -51 2027 149 0 0 chr3 35608475 35608795 -191915783 + AluSx SINE Alu 1 320 0 392 298 25 50 chr3 35609141 35609258 -191915320 + MER5B DNA MER1_type 2 115 -63 2095 115 7 7 chr3 35609258 35609597 -191914981 - AluSc SINE Alu 0 309 1 392 298 25 50 chr3 35609597 35609640 -191914938 + MER5B DNA MER1_type 115 158 -20 258 200 0 0 chr3 35611043 35611088 -191913490 + MLT1J LTR MaLR 1 45 -466 902 259 17 9 chr3 35611100 35611332 -191913246 + Tigger7 DNA MER2_type 1 234 -499 423 181 24 24 chr3 35611353 35611436 -191913142 + Tigger7 DNA MER2_type 2505 2587 0 606 238 71 52 chr3 35611501 35611952 -191912626 - LTR48B LTR ERV1 -11 776 128 3844 117 42 8 chr3 35611952 35612566 -191912012 - MER41B LTR ERV1 0 635 1 376 253 0 0 chr3 35612570 35612657 -191911921 - MER34 LTR ERV1 -454 88 2 267 272 103 35 chr3 35613396 35613628 -191910950 + HAL1 LINE L1 2254 2501 -6 2213 111 0 10 chr3 35613771 35614078 -191910500 - AluSx SINE Alu -8 304 1 1389 255 96 31 chr3 35614079 35614765 -191909813 - HAL1 LINE L1 -778 1729 999 1330 193 96 0 chr3 35614765 35615014 -191909564 - AluJo SINE Alu -39 273 1 266 253 0 13 chr3 35615066 35615141 -191909437 - HAL1 LINE L1 -2296 211 138 1858 159 83 10 chr3 35615327 35615943 -191908635 + MER39 LTR ERV1 1 705 -2 233 277 36 27 chr3 35616235 35616347 -191908231 + MIR SINE MIR 117 229 -33 376 138 130 29 chr3 35617501 35617639 -191906939 + MER53 DNA DNA 1 152 -37 278 299 104 6 chr3 35618008 35618172 -191906406 - L1ME2 LINE L1 -258 5906 5727 272 109 0 18 chr3 35618949 35619004 -191905574 + (TA)n Simple_repeat Simple_repeat 2 55 0 303 237 11 43 chr3 35619011 35619104 -191905474 + L1MC4 LINE L1 6614 6703 -1339 339 144 31 0 chr3 35619111 35619208 -191905370 + (TA)n Simple_repeat Simple_repeat 2 101 0 325 221 0 53 chr3 35619215 35619310 -191905268 + L1MC4 LINE L1 6614 6703 -1339 185 239 0 11 chr3 35619315 35619407 -191905171 + (TA)n Simple_repeat Simple_repeat 1 91 0 567 144 23 11 chr3 35619525 35619699 -191904879 + (TA)n Simple_repeat Simple_repeat 2 177 0 310 256 11 11 chr3 35619706 35619796 -191904782 + L1MC4 LINE L1 6614 6703 -1339 213 152 13 25 chr3 35619799 35619878 -191904700 + (TA)n Simple_repeat Simple_repeat 2 79 0 442 210 54 30 chr3 35619881 35620048 -191904530 + L1ME4a LINE L1 5935 6105 -16 200 33 0 33 chr3 35620558 35620588 -191903990 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 489 180 63 116 chr3 35621828 35622017 -191902561 - MER20 DNA MER1_type 0 219 41 262 227 206 10 chr3 35622041 35622138 -191902440 - MIR SINE MIR -7 255 140 * 313 260 39 39 chr3 35622124 35622228 -191902350 + L2 LINE L2 3133 3236 -36 1981 253 157 1 chr3 35622297 35623026 -191901552 + L2 LINE L2 2460 3306 -7 257 333 30 77 chr3 35623108 35623276 -191901302 + MER5B DNA MER1_type 1 160 -18 2155 121 3 13 chr3 35623448 35623763 -191900815 - AluSx SINE Alu 0 312 1 621 266 125 0 chr3 35623843 35624027 -191900551 + MIR SINE MIR 56 262 0 229 340 66 28 chr3 35624043 35624149 -191900429 + MER5B DNA MER1_type 60 169 -9 201 263 40 40 chr3 35624293 35624369 -191900209 - MIR3 SINE MIR -17 191 116 320 262 19 48 chr3 35624444 35624547 -191900031 + MER5A DNA MER1_type 14 113 -76 446 271 10 0 chr3 35624557 35624653 -191899925 - MER5B DNA MER1_type -3 175 79 214 264 85 47 chr3 35625061 35625167 -191899411 + MIR SINE MIR 107 216 -46 517 311 85 1 chr3 35625220 35625443 -191899135 - MIR SINE MIR -14 248 7 33 25 0 0 chr3 35625473 35625513 -191899065 + AT_rich Low_complexity Low_complexity 1 40 0 291 191 0 0 chr3 35625903 35625966 -191898612 + CT-rich Low_complexity Low_complexity 2 64 0 598 247 29 12 chr3 35626044 35626214 -191898364 - MER5B DNA MER1_type -3 175 3 197 369 162 0 chr3 35626561 35626672 -191897906 + MIR SINE MIR 19 147 -61 450 291 80 6 chr3 35626819 35626994 -191897584 - MER5A DNA MER1_type -1 188 1 4178 245 31 34 chr3 35627355 35630431 -191894147 + L1M4 LINE L1 816 3990 -2654 3124 169 24 11 chr3 35630411 35630632 -191893946 + L1MB5 LINE L1 5510 5727 -447 * 2732 76 3 0 chr3 35630632 35630986 -191893592 - THE1A LTR MaLR 0 355 1 3124 169 24 11 chr3 35630986 35631385 -191893193 + L1MB5 LINE L1 5727 6138 -36 282 245 95 72 chr3 35631435 35631741 -191892837 - L1MC4a LINE L1 -1693 6115 5803 308 202 10 101 chr3 35632701 35632800 -191891778 + L2 LINE L2 3223 3312 -1 243 127 18 0 chr3 35632838 35632894 -191891684 - MLT2C1 LTR ERVL 0 514 357 1460 188 41 16 chr3 35632943 35633263 -191891315 - MLT2C1 LTR ERVL -62 335 8 2240 104 0 10 chr3 35633266 35633563 -191891015 + AluSx SINE Alu 1 294 -18 279 286 0 0 chr3 35634387 35634450 -191890128 - L2 LINE L2 -2 3311 3249 415 325 58 19 chr3 35635404 35635558 -191889020 - MIR SINE MIR -45 217 58 234 0 0 0 chr3 35636424 35636450 -191888128 + (TA)n Simple_repeat Simple_repeat 2 27 0 2293 101 0 0 chr3 35636450 35636748 -191887830 - AluSx SINE Alu -14 298 1 368 297 47 31 chr3 35637224 35637352 -191887226 + L2 LINE L2 3143 3272 0 334 318 12 0 chr3 35637365 35637450 -191887128 + L2 LINE L2 3210 3295 -18 2490 71 3 7 chr3 35637622 35637932 -191886646 - AluSg SINE Alu -1 309 1 244 305 48 9 chr3 35639287 35639392 -191885186 - MIR3 SINE MIR -7 201 93 1917 138 12 6 chr3 35639897 35640223 -191884355 - MER2 DNA MER2_type -3 342 15 264 277 59 0 chr3 35640227 35640328 -191884250 - MIR SINE MIR -84 178 72 2090 100 21 0 chr3 35640539 35640829 -191883749 + AluSx SINE Alu 3 298 -14 1383 204 72 49 chr3 35640851 35641239 -191883339 + LTR16A1 LTR ERVL 19 415 -42 617 178 40 35 chr3 35641260 35641434 -191883144 + MER53 DNA DNA 15 189 0 258 196 0 0 chr3 35641440 35641486 -191883092 + LTR16A1 LTR ERVL 412 457 0 1008 256 5 0 chr3 35641973 35642196 -191882382 - MER58A DNA MER1_type 0 224 1 250 188 30 20 chr3 35642476 35642577 -191882001 + (TTA)n Simple_repeat Simple_repeat 2 103 0 2125 140 0 3 chr3 35642734 35643048 -191881530 + AluSq SINE Alu 1 313 0 884 226 83 0 chr3 35643979 35644183 -191880395 - MER58A DNA MER1_type -3 221 1 277 315 14 41 chr3 35644326 35644472 -191880106 + MLT1K LTR MaLR 126 267 -321 241 294 9 28 chr3 35644978 35645087 -191879491 + MLT1K LTR MaLR 400 506 -82 374 200 0 0 chr3 35646184 35646264 -191878314 + MER116 DNA Mariner 1 80 0 233 281 208 73 chr3 35646566 35646744 -191877834 + MIR SINE MIR 56 257 -5 201 121 0 0 chr3 35646756 35646789 -191877789 + (TTA)n Simple_repeat Simple_repeat 1 33 0 522 306 121 10 chr3 35646894 35647093 -191877485 + MIR SINE MIR 20 240 -22 660 242 126 61 chr3 35647285 35647611 -191876967 - L2 LINE L2 0 3313 2967 743 241 16 16 chr3 35648018 35648205 -191876373 - MIR SINE MIR -24 238 52 655 242 8 0 chr3 35648229 35648357 -191876221 - MER5A DNA MER1_type 0 189 61 296 135 0 0 chr3 35648376 35648428 -191876150 - MER41A LTR ERV1 -87 467 416 1231 134 19 29 chr3 35648429 35648638 -191875940 + AluSx SINE Alu 1 207 -105 576 231 61 79 chr3 35649057 35649166 -191875412 + MLT1H LTR MaLR 58 167 -382 2207 114 6 28 chr3 35649166 35649483 -191875095 + AluSq SINE Alu 1 310 -3 576 231 61 79 chr3 35649483 35649602 -191874976 + MLT1H LTR MaLR 167 282 -267 632 261 36 22 chr3 35649967 35650243 -191874335 - MER113 DNA MER1_type? -196 325 46 192 40 0 0 chr3 35650650 35650675 -191873903 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 614 264 5 35 chr3 35650957 35651158 -191873420 - L2 LINE L2 -8 3305 3111 278 67 22 0 chr3 35651179 35651224 -191873354 + (TG)n Simple_repeat Simple_repeat 2 47 0 1817 47 0 5 chr3 35651473 35651688 -191872890 - AluY SINE Alu 0 311 98 285 247 151 38 chr3 35651994 35652180 -191872398 - MLT1F LTR MaLR -66 501 295 291 289 187 18 chr3 35652585 35652751 -191871827 + MIR SINE MIR 20 213 -49 366 268 33 46 chr3 35652834 35652987 -191871591 - MLT1J LTR MaLR -8 503 353 1403 214 21 122 chr3 35652991 35653785 -191870793 - L1MD3 LINE L1 -833 7162 6311 1580 213 27 60 chr3 35653805 35654539 -191870039 - L1ME LINE L1 -594 5572 4857 366 196 41 0 chr3 35654619 35654716 -191869862 + MER20B DNA MER1_type 585 685 -98 1343 293 71 31 chr3 35654809 35654952 -191869626 - L2 LINE L2 -512 2802 2666 2315 113 0 0 chr3 35654952 35655254 -191869324 + AluSx SINE Alu 2 303 -9 1343 293 71 31 chr3 35655254 35655659 -191868919 - L2 LINE L2 -648 2666 2232 430 265 56 6 chr3 35655679 35655841 -191868737 - HAL1 LINE L1 -1224 1283 1114 2339 131 15 35 chr3 35656115 35656513 -191868065 + MLT1B LTR MaLR 1 390 0 2281 103 0 34 chr3 35656923 35657243 -191867335 - AluSg SINE Alu 0 310 2 2418 83 0 10 chr3 35657436 35657748 -191866830 - AluSp SINE Alu -4 309 1 21 0 0 0 chr3 35657932 35657953 -191866625 + AT_rich Low_complexity Low_complexity 1 21 0 190 400 0 9 chr3 35658085 35658190 -191866388 - MER5A DNA MER1_type -4 185 82 29 0 0 0 chr3 35658462 35658491 -191866087 + AT_rich Low_complexity Low_complexity 1 29 0 406 343 60 10 chr3 35659354 35659555 -191865023 + MIR SINE MIR 18 228 -34 204 295 107 67 chr3 35659549 35659773 -191864805 - L2 LINE L2 -535 2779 2547 * 2249 107 3 19 chr3 35660582 35660899 -191863679 - AluSx SINE Alu 0 312 1 1077 83 0 0 chr3 35660901 35661033 -191863545 - AluSq/x SINE Alu -181 132 1 807 272 58 9 chr3 35661681 35661905 -191862673 - MIR SINE MIR 0 262 28 354 45 0 0 chr3 35662425 35662469 -191862109 + (TG)n Simple_repeat Simple_repeat 2 45 0 1346 221 103 25 chr3 35662774 35663209 -191861369 + MER20B DNA MER1_type 293 761 -22 207 69 0 0 chr3 35663715 35663744 -191860834 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr3 35664112 35664140 -191860438 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 35664470 35664498 -191860080 + AT_rich Low_complexity Low_complexity 1 28 0 243 188 21 0 chr3 35664515 35664563 -191860015 + MER91 DNA MER1_type 79 127 -63 28 0 0 0 chr3 35664989 35665017 -191859561 + AT_rich Low_complexity Low_complexity 1 28 0 693 261 70 60 chr3 35666039 35666323 -191858255 + MLT1J LTR MaLR 223 509 -2 430 279 90 0 chr3 35668149 35668260 -191856318 + L2 LINE L2 3190 3310 -3 669 191 30 15 chr3 35668857 35668988 -191855590 - FLAM_A SINE Alu 0 133 1 231 234 130 0 chr3 35669006 35669083 -191855495 - L1ME LINE L1 -411 5710 5624 423 278 106 21 chr3 35669133 35669698 -191854880 - L1ME LINE L1 -753 5393 4908 1454 211 148 94 chr3 35669745 35670639 -191853939 - LTR1B LTR ERV1 0 1020 3 180 0 0 0 chr3 35671625 35671645 -191852933 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 408 378 13 0 chr3 35671907 35672063 -191852515 - MIR3 SINE MIR -13 195 38 264 217 58 14 chr3 35672280 35672349 -191852229 + MIR SINE MIR 179 250 -12 290 135 19 0 chr3 35672352 35672404 -191852174 + L2 LINE L2 3261 3313 0 261 224 144 56 chr3 35673009 35673134 -191851444 + MIR SINE MIR 49 184 -78 1803 136 40 22 chr3 35673270 35673593 -191850985 + L1MB2 LINE L1 5750 6078 -93 994 171 39 17 chr3 35673829 35674010 -191850568 - MER20B DNA MER1_type -17 202 18 499 297 19 48 chr3 35674542 35674746 -191849832 - MIR SINE MIR -47 215 15 511 284 60 33 chr3 35675647 35675706 -191848872 + MER5A DNA MER1_type 2 58 -131 2299 119 0 6 chr3 35675706 35676017 -191848561 - AluSx SINE Alu -3 309 1 511 284 60 33 chr3 35676017 35676140 -191848438 + MER5A DNA MER1_type 58 189 0 1350 165 34 49 chr3 35676223 35676551 -191848027 + MER33 DNA MER1_type 2 324 0 863 252 25 41 chr3 35676650 35676892 -191847686 - MIR SINE MIR -6 256 19 806 188 16 172 chr3 35679080 35679266 -191845312 + MLT1E LTR MaLR 1 162 -431 269 175 70 0 chr3 35679246 35679303 -191845275 + MLT1E LTR MaLR 119 179 -414 * 629 244 25 45 chr3 35679391 35679496 -191845082 + LTR16C LTR ERVL 286 387 -104 2017 133 128 13 chr3 35679496 35679880 -191844698 + MSTA LTR MaLR 1 428 0 629 244 25 45 chr3 35679880 35679975 -191844603 + LTR16C LTR ERVL 387 482 -9 670 157 0 90 chr3 35681706 35681840 -191842738 + MER7A DNA MER2_type 1 120 -226 281 306 92 13 chr3 35682462 35682646 -191841932 + MIR3 SINE MIR 3 207 -55 41 66 0 0 chr3 35682656 35682732 -191841846 + AT_rich Low_complexity Low_complexity 1 76 0 1425 141 14 0 chr3 35682874 35683087 -191841491 - Tigger3(Golem) DNA MER2_type 0 3029 2814 244 361 8 33 chr3 35683530 35683652 -191840926 - MIR3 SINE MIR -76 132 14 505 248 29 0 chr3 35683734 35683839 -191840739 + MER81 DNA DNA 3 110 -4 531 226 92 6 chr3 35683861 35684025 -191840553 + MER5B DNA MER1_type 1 178 0 300 27 0 0 chr3 35684139 35684176 -191840402 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 7750 23 0 3 chr3 35684429 35685503 -191839075 - L1PA3 LINE L1 0 6155 5083 378 0 0 0 chr3 35686438 35686480 -191838098 + (TG)n Simple_repeat Simple_repeat 2 43 0 276 322 50 0 chr3 35686867 35686988 -191837590 + LTR67 LTR ERVL 380 506 -51 201 245 0 0 chr3 35687029 35687078 -191837500 + A-rich Low_complexity Low_complexity 2 50 0 202 282 254 9 chr3 35688374 35688484 -191836094 + MIR SINE MIR 6 142 -120 575 151 84 0 chr3 35689325 35689444 -191835134 - L1MA9 LINE L1 -38 6274 6146 201 234 78 31 chr3 35689540 35689604 -191834974 - MER5A DNA MER1_type 0 189 123 11247 177 20 51 chr3 35689831 35694821 -191829757 - L1M1 LINE L1 -744 6821 1675 1899 144 0 21 chr3 35694821 35695105 -191829473 + AluSq SINE Alu 1 278 -35 333 0 0 0 chr3 35695106 35695143 -191829435 + (TC)n Simple_repeat Simple_repeat 2 38 0 225 0 0 0 chr3 35695142 35695167 -191829411 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 11247 177 20 51 chr3 35695143 35696323 -191828255 - L1M1 LINE L1 -5889 1676 321 336 153 0 0 chr3 35696323 35696382 -191828196 + Alu SINE Alu 241 299 -2 1947 113 62 0 chr3 35696660 35696952 -191827626 + AluSx SINE Alu 1 310 -2 1195 299 127 37 chr3 35696956 35697984 -191826594 + HAL1 LINE L1 1063 2183 -324 1791 144 56 3 chr3 35698162 35698447 -191826131 + AluSq SINE Alu 1 300 -13 486 266 58 44 chr3 35698448 35698722 -191825856 + L1MC/D LINE L1 3079 3356 -2790 752 45 99 13 chr3 35699023 35699246 -191825332 + CT-rich Low_complexity Low_complexity 1 242 0 615 171 11 48 chr3 35699261 35699448 -191825130 + CT-rich Low_complexity Low_complexity 1 180 0 1436 206 40 0 chr3 35699448 35699744 -191824834 - AluJo SINE Alu -4 308 1 342 259 120 120 chr3 35699906 35700366 -191824212 + L1MC/D LINE L1 3986 4445 -1701 277 244 52 17 chr3 35700408 35700523 -191824055 + L1MC/D LINE L1 4478 4596 -1550 692 264 68 55 chr3 35700542 35700852 -191823726 + L2 LINE L2 2984 3297 -16 22 35 0 0 chr3 35700985 35701014 -191823564 + AT_rich Low_complexity Low_complexity 1 29 0 6763 150 24 2 chr3 35701144 35703097 -191821481 - L1PA11 LINE L1 -2 6172 4186 265 299 32 19 chr3 35703099 35703256 -191821322 + L1MC/D LINE L1 4678 4836 -1310 183 221 88 15 chr3 35704099 35704167 -191820411 + L3 LINE CR1 1380 1452 -125 2351 133 42 28 chr3 35704191 35704618 -191819960 - L1MC1 LINE L1 0 6333 5901 223 284 0 68 chr3 35704639 35704727 -191819851 + MIR SINE MIR 67 148 -114 964 206 22 0 chr3 35705104 35705288 -191819290 + MLT1B LTR MaLR 1 188 -202 331 196 0 0 chr3 35705288 35705344 -191819234 + MLT1B LTR MaLR 333 388 -2 240 330 123 9 chr3 35705388 35705494 -191819084 - MIR SINE MIR -10 252 135 507 274 157 7 chr3 35706026 35706179 -191818399 - MER5A DNA MER1_type -5 184 9 382 316 85 37 chr3 35706260 35706532 -191818046 + L1MC/D LINE L1 5392 5676 -2132 1750 133 43 7 chr3 35706722 35707022 -191817556 - AluSx SINE Alu -1 311 1 749 234 23 0 chr3 35707562 35707737 -191816841 + MLT1B LTR MaLR 10 188 -202 311 196 0 0 chr3 35707737 35707793 -191816785 + MLT1B LTR MaLR 333 388 -2 241 321 123 9 chr3 35707837 35707943 -191816635 - MIR SINE MIR -10 252 135 507 274 157 7 chr3 35708475 35708628 -191815950 - MER5A DNA MER1_type -5 184 9 382 316 85 37 chr3 35708709 35708981 -191815597 + L1MC/D LINE L1 5392 5676 -2132 2086 115 30 0 chr3 35709171 35709466 -191815112 - AluSx SINE Alu -8 304 1 276 111 0 0 chr3 35709888 35709933 -191814645 + (TC)n Simple_repeat Simple_repeat 1 45 0 237 215 11 32 chr3 35709934 35710020 -191814558 + (TA)n Simple_repeat Simple_repeat 2 87 -5 303 28 0 0 chr3 35710020 35710056 -191814522 + (CA)n Simple_repeat Simple_repeat 1 36 0 237 215 11 32 chr3 35710056 35710062 -191814516 + (TA)n Simple_repeat Simple_repeat 87 92 0 189 0 0 0 chr3 35711029 35711050 -191813528 + (A)n Simple_repeat Simple_repeat 1 21 0 2264 107 0 10 chr3 35713471 35713771 -191810807 - AluSx SINE Alu -15 297 1 248 302 0 0 chr3 35713812 35713875 -191810703 - L2 LINE L2 -5 3308 3246 645 278 222 10 chr3 35713973 35714261 -191810317 + L2 LINE L2 2500 2848 -466 295 124 360 11 chr3 35714261 35714350 -191810228 + MER39 LTR ERV1 1 120 -587 * 1408 144 29 47 chr3 35714335 35714572 -191810006 + MER39 LTR ERV1 264 497 -210 2036 116 7 7 chr3 35714572 35714865 -191809713 - AluSq SINE Alu -20 293 1 1408 144 29 47 chr3 35714865 35714905 -191809673 + MER39 LTR ERV1 497 536 -171 1011 123 0 12 chr3 35714954 35715116 -191809462 + MER39 LTR ERV1 544 703 -4 583 342 74 0 chr3 35715121 35715311 -191809267 + L2 LINE L2 2851 3054 -259 233 236 0 0 chr3 35715546 35715601 -191808977 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 819 128 0 0 chr3 35715607 35715748 -191808830 + (CAATA)n Simple_repeat Simple_repeat 1 141 0 1739 139 14 0 chr3 35715748 35716035 -191808543 + AluSp SINE Alu 2 292 -21 243 128 0 0 chr3 35716035 35716077 -191808501 + (CATA)n Simple_repeat Simple_repeat 3 44 0 22 35 0 0 chr3 35716083 35716112 -191808466 + AT_rich Low_complexity Low_complexity 1 29 0 1606 115 26 43 chr3 35716113 35716417 -191808161 + AluSg SINE Alu 1 299 -11 216 204 0 0 chr3 35716456 35716500 -191808078 + A-rich Low_complexity Low_complexity 1 44 0 1156 260 84 34 chr3 35719758 35719786 -191804792 + L2 LINE L2 2757 2782 -531 1586 119 153 4 chr3 35719786 35719907 -191804671 + AluSx SINE Alu 1 103 -209 228 67 0 0 chr3 35719907 35719937 -191804641 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1586 119 153 4 chr3 35719937 35720083 -191804495 + AluSx SINE Alu 103 308 -4 1156 260 84 34 chr3 35720083 35720591 -191803987 + L2 LINE L2 2782 3312 -1 348 286 114 29 chr3 35720733 35720873 -191803705 + L2 LINE L2 3162 3313 0 189 0 0 0 chr3 35721039 35721060 -191803518 + (TA)n Simple_repeat Simple_repeat 2 22 0 279 302 0 0 chr3 35722571 35722687 -191801891 + C-rich Low_complexity Low_complexity 1 116 0 4541 204 27 33 chr3 35723379 35725315 -191799263 - L1MD1 LINE L1 -22 6220 4300 197 306 0 0 chr3 35726560 35726609 -191797969 + L2 LINE L2 3265 3313 0 446 141 24 0 chr3 35727076 35727157 -191797421 + MSTA LTR MaLR 1 83 -345 2165 111 9 15 chr3 35727157 35727499 -191797079 + THE1A LTR MaLR 1 340 -15 1950 150 32 3 chr3 35727497 35727836 -191796742 + MSTA LTR MaLR 80 428 0 * 398 229 175 66 chr3 35728222 35728405 -191796173 + MIR SINE MIR 31 233 -29 251 318 24 0 chr3 35728418 35728503 -191796075 + MIR SINE MIR 104 190 -72 284 224 17 0 chr3 35729936 35729994 -191794584 - L2 LINE L2 0 3272 3214 405 102 0 0 chr3 35730000 35730059 -191794519 + (TGGA)n Simple_repeat Simple_repeat 3 61 0 21 0 0 0 chr3 35730168 35730189 -191794389 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr3 35730656 35730684 -191793894 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 2008 151 12 54 chr3 35731604 35732009 -191792569 + MLT1B LTR MaLR 1 388 -2 2055 234 141 37 chr3 35732841 35733825 -191790753 - MER97c DNA MER1_type? -3 1087 1 25 65 0 0 chr3 35734085 35734131 -191790447 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr3 35734170 35734198 -191790380 + AT_rich Low_complexity Low_complexity 1 28 0 719 231 40 71 chr3 35734206 35734530 -191790048 + L1ME3A LINE L1 5848 6161 -9 190 212 91 30 chr3 35734621 35734687 -191789891 + L2 LINE L2 1771 1840 -1474 270 322 119 0 chr3 35735395 35735513 -191789065 - MIR SINE MIR 0 262 131 506 264 40 79 chr3 35738452 35738679 -191785899 - L2 LINE L2 0 3313 3096 449 324 23 7 chr3 35740947 35741095 -191783483 + MIR3 SINE MIR 48 199 -9 23 0 0 0 chr3 35741404 35741427 -191783151 + AT_rich Low_complexity Low_complexity 1 23 0 14380 35 0 0 chr3 35741595 35744101 -191780477 - L1PA3 LINE L1 0 6155 3649 188 206 0 0 chr3 35745086 35745120 -191779458 - MIR SINE MIR -121 87 54 500 265 20 0 chr3 35745142 35745244 -191779334 + MER5A DNA MER1_type 10 113 -76 205 191 0 24 chr3 35745931 35745973 -191778605 + CT-rich Low_complexity Low_complexity 4 44 0 3740 127 82 27 chr3 35747008 35747677 -191776901 + MER50 LTR ERV1 6 711 -23 930 191 0 6 chr3 35747779 35747947 -191776631 + AluJo SINE Alu 1 167 -145 2946 176 0 47 chr3 35748504 35749009 -191775569 + MLT2B3 LTR ERVL 3 479 -75 2140 186 49 7 chr3 35749009 35749418 -191775160 - MSTA LTR MaLR 0 428 3 2946 176 0 47 chr3 35749418 35749491 -191775087 + MLT2B3 LTR ERVL 479 554 0 2282 120 0 0 chr3 35749554 35749862 -191774716 + AluSg SINE Alu 3 310 0 2364 189 36 18 chr3 35749935 35750312 -191774266 + MLT1D LTR MaLR 1 391 -114 2258 183 5 0 chr3 35750312 35750711 -191773867 - MER57A LTR ERV1 0 403 3 2364 189 36 18 chr3 35750711 35750829 -191773749 + MLT1D LTR MaLR 391 505 0 2285 100 3 28 chr3 35751051 35751371 -191773207 + AluSx SINE Alu 1 312 0 381 249 86 32 chr3 35751420 35751641 -191772937 + MER46C DNA MER2_type 26 258 -80 2032 128 7 7 chr3 35752568 35752897 -191771681 + AluSc SINE Alu 1 309 0 2041 118 3 17 chr3 35753010 35753323 -191771255 - AluSq SINE Alu 0 309 1 2133 171 8 3 chr3 35754484 35754847 -191769731 + MLT1A1 LTR MaLR 1 365 0 348 293 78 9 chr3 35754896 35755012 -191769566 + L2 LINE L2 3188 3311 -2 199 0 65 0 chr3 35755073 35755104 -191769474 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1299 236 28 38 chr3 35755106 35755533 -191769045 + HAL1 LINE L1 1374 1796 -711 336 299 85 29 chr3 35755614 35755955 -191768623 + HAL1 LINE L1 1903 2262 -245 1566 143 36 8 chr3 35756059 35756311 -191768267 + AluSx SINE Alu 47 305 -7 1448 105 4 116 chr3 35757774 35758101 -191766477 - AluSc SINE Alu 0 330 35 253 270 0 0 chr3 35758102 35758169 -191766409 - MIR SINE MIR -57 151 84 308 261 118 59 chr3 35758240 35758359 -191766219 - L2 LINE L2 0 3272 3147 384 369 38 0 chr3 35758405 35758562 -191766016 - L2 LINE L2 -437 2877 2715 255 319 11 11 chr3 35759479 35759570 -191765008 + GA-rich Low_complexity Low_complexity 2 92 0 216 338 0 0 chr3 35760100 35760174 -191764404 + MIR SINE MIR 186 259 -3 431 289 19 19 chr3 35760274 35760430 -191764148 - MIR3 SINE MIR -23 185 30 324 228 16 25 chr3 35760780 35760909 -191763669 - L1MC4 LINE L1 -1339 6983 1986 422 338 9 45 chr3 35760968 35761190 -191763388 - L2 LINE L2 -2 3311 3098 462 252 127 20 chr3 35761521 35761725 -191762853 - MIR SINE MIR -25 237 5 885 203 32 46 chr3 35762272 35762489 -191762089 + MER20 DNA MER1_type 1 214 -5 2983 235 70 20 chr3 35762647 35763428 -191761150 + L1MC4a LINE L1 2 883 -5657 315 273 22 14 chr3 35763435 35763574 -191761004 + L1MC4a LINE L1 5422 5561 -979 402 288 7 7 chr3 35764010 35764149 -191760429 - MER117 DNA MER1_type -35 162 24 270 299 110 26 chr3 35764828 35764982 -191759596 + MIR SINE MIR 53 219 -43 1984 255 91 22 chr3 35765189 35765262 -191759316 + L1MC4a LINE L1 5696 5763 -2439 180 0 0 0 chr3 35765262 35765282 -191759296 + (TA)n Simple_repeat Simple_repeat 1 20 0 1984 255 91 22 chr3 35765282 35766020 -191758558 + L1MC4a LINE L1 5763 6563 -1639 359 252 16 57 chr3 35766264 35766387 -191758191 + MER5B DNA MER1_type 71 177 -1 662 277 57 94 chr3 35766444 35766794 -191757784 + L2 LINE L2 2189 2525 -789 1394 175 4 0 chr3 35766911 35767179 -191757399 + L1MA9 LINE L1 6033 6301 -11 1110 286 54 37 chr3 35767295 35768053 -191756525 + L2 LINE L2 2550 3313 0 2437 134 52 45 chr3 35768164 35768476 -191756102 - L1MA9 LINE L1 0 6312 6004 2446 87 14 14 chr3 35768476 35768831 -191755747 + THE1A LTR MaLR 1 355 0 11500 94 15 10 chr3 35768832 35770077 -191754501 + THE1A-int LTR MaLR 2 1259 -321 1926 142 28 3 chr3 35770077 35770359 -191754219 - AluSg SINE Alu -21 289 1 11500 94 15 10 chr3 35770359 35770683 -191753895 + THE1A-int LTR MaLR 1259 1580 0 2180 149 6 8 chr3 35770683 35771039 -191753539 + THE1A LTR MaLR 1 355 0 2437 134 52 45 chr3 35771039 35771239 -191753339 - L1MA9 LINE L1 -307 6005 5793 207 69 0 0 chr3 35771239 35771268 -191753310 + (CA)n Simple_repeat Simple_repeat 2 30 0 255 215 19 9 chr3 35771276 35771383 -191753195 + (TA)n Simple_repeat Simple_repeat 1 108 0 2336 148 48 48 chr3 35771383 35772370 -191752208 - L1MA9 LINE L1 -518 5773 4789 247 273 0 0 chr3 35772370 35772436 -191752142 + L1 LINE L1 4350 4415 -1731 418 163 33 0 chr3 35772750 35772842 -191751736 + T-rich Low_complexity Low_complexity 4 98 0 1761 167 0 4 chr3 35772865 35773141 -191751437 - AluSq SINE Alu -38 275 1 869 222 58 0 chr3 35774177 35774384 -191750194 + MER20 DNA MER1_type 1 219 0 1463 249 83 30 chr3 35775280 35775822 -191748756 - MLT1E2 LTR MaLR 0 626 75 2170 96 10 3 chr3 35775822 35776114 -191748464 + AluY SINE Alu 3 296 -15 1463 249 83 30 chr3 35776114 35776194 -191748384 - MLT1E2 LTR MaLR -551 75 1 1594 181 73 27 chr3 35776199 35776569 -191748009 + MLT1B LTR MaLR 1 387 -3 2851 120 31 5 chr3 35776940 35777357 -191747221 + MSTA LTR MaLR 1 428 0 9271 153 34 16 chr3 35777358 35778979 -191745599 + MSTA-int LTR MaLR 2 1651 0 2623 141 29 7 chr3 35778979 35779398 -191745180 + MSTA LTR MaLR 1 428 0 21 0 0 0 chr3 35779713 35779734 -191744844 + AT_rich Low_complexity Low_complexity 1 21 0 270 160 0 0 chr3 35780894 35780944 -191743634 + (TGAA)n Simple_repeat Simple_repeat 1 50 0 837 236 198 0 chr3 35782334 35782546 -191742032 - MIR SINE MIR -1 261 8 342 0 0 0 chr3 35782591 35782629 -191741949 + (TG)n Simple_repeat Simple_repeat 2 39 0 2299 121 0 0 chr3 35783064 35783433 -191741145 - AluSq SINE Alu 0 369 1 271 379 26 0 chr3 35784323 35784439 -191740139 + L2 LINE L2 3153 3271 -1 193 200 0 0 chr3 35784765 35784800 -191739778 + MIR SINE MIR 109 143 -65 2178 152 0 0 chr3 35785697 35786007 -191738571 + AluSx SINE Alu 1 310 -2 321 282 106 17 chr3 35786127 35786310 -191738268 + L1MC/D LINE L1 2290 2527 -3901 265 327 25 35 chr3 35786355 35786557 -191738021 + L1MC/D LINE L1 5560 5759 -2285 22 0 0 0 chr3 35786900 35786922 -191737656 + AT_rich Low_complexity Low_complexity 1 22 0 5157 260 60 45 chr3 35788172 35789291 -191735287 + L1ME1 LINE L1 1093 2194 -4370 5127 142 23 5 chr3 35789291 35790645 -191733933 - L1PA16 LINE L1 -10 6156 4774 5157 260 60 45 chr3 35790645 35792054 -191732524 + L1ME1 LINE L1 2194 3580 -2984 542 267 118 20 chr3 35792054 35792249 -191732329 - MER58C DNA MER1_type 0 215 2 5157 260 60 45 chr3 35792249 35792840 -191731738 + L1ME1 LINE L1 3580 4161 -2403 2311 86 3 7 chr3 35792840 35793144 -191731434 + AluY SINE Alu 1 303 -8 5157 260 60 45 chr3 35793144 35794406 -191730172 + L1ME1 LINE L1 4161 5766 -798 585 141 0 0 chr3 35794408 35794493 -191730085 + AluJb SINE Alu 31 115 -197 621 173 8 0 chr3 35794507 35794634 -191729944 + L1ME1 LINE L1 5764 5891 -693 291 231 0 15 chr3 35794675 35794740 -191729838 + L1ME1 LINE L1 5986 6049 -533 261 109 0 0 chr3 35794740 35794786 -191729792 + (CA)n Simple_repeat Simple_repeat 2 47 0 1229 215 25 41 chr3 35794822 35795190 -191729388 + L1ME1 LINE L1 6137 6498 -86 2190 108 3 0 chr3 35796418 35796715 -191727863 + AluSx SINE Alu 1 298 -14 23 33 0 0 chr3 35796812 35796842 -191727736 + AT_rich Low_complexity Low_complexity 1 30 0 419 250 66 13 chr3 35797282 35797434 -191727144 + MER103 DNA DNA 7 166 0 704 159 0 0 chr3 35798030 35798137 -191726441 + FLAM_C SINE Alu 12 118 -25 186 43 0 0 chr3 35798142 35798165 -191726413 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2284 113 3 3 chr3 35798313 35798623 -191725955 + AluSg SINE Alu 1 310 0 215 305 0 24 chr3 35799180 35799262 -191725316 + MIR SINE MIR 172 251 -11 198 191 0 0 chr3 35799278 35799320 -191725258 + (CTA)n Simple_repeat Simple_repeat 1 42 0 417 263 134 53 chr3 35799387 35799558 -191725020 + MER5A DNA MER1_type 4 188 -1 272 297 0 0 chr3 35799769 35799843 -191724735 + L2 LINE L2 2290 2363 -951 409 288 34 17 chr3 35799848 35800062 -191724516 - LTR16A1 LTR ERVL 0 457 279 442 295 154 6 chr3 35800075 35800231 -191724347 + MER5A DNA MER1_type 11 189 0 264 296 22 84 chr3 35800263 35800442 -191724136 - LTR16C LTR ERVL -242 249 82 218 234 21 0 chr3 35801045 35801092 -191723486 + L2 LINE L2 3264 3311 -2 549 51 0 0 chr3 35801408 35801486 -191723092 - L1PA2 LINE L1 0 6155 6078 188 119 0 24 chr3 35801752 35801794 -191722784 + (TC)n Simple_repeat Simple_repeat 2 42 0 360 296 73 59 chr3 35802501 35802672 -191721906 - MIR SINE MIR 0 262 89 465 303 78 7 chr3 35802672 35802814 -191721764 + MIR SINE MIR 2 153 -109 1055 141 0 0 chr3 35802818 35802995 -191721583 - MER6A DNA MER2_type 0 605 429 6838 79 6 0 chr3 35802995 35804153 -191720425 + L1P3 LINE L1 4364 5529 -625 26232 34 17 2 chr3 35804156 35809689 -191714889 + L1P1 LINE L1 2 5657 -498 852 86 0 0 chr3 35809918 35810034 -191714544 - L1PA8 LINE L1 -2 6170 6055 2078 177 11 6 chr3 35810034 35810395 -191714183 - MER6A DNA MER2_type -172 433 71 228 208 226 0 chr3 35810418 35810471 -191714107 + MIR SINE MIR 154 218 -44 185 345 82 12 chr3 35810652 35810823 -191713755 + L3b LINE CR1 1213 1395 -188 1688 249 116 0 chr3 35810844 35811329 -191713249 + MLT1H LTR MaLR 1 541 -8 406 359 67 36 chr3 35812390 35812984 -191711594 - L2 LINE L2 -1 3271 2664 2099 123 3 3 chr3 35813173 35813474 -191711104 - AluSx SINE Alu -11 301 1 301 268 12 12 chr3 35813482 35813564 -191711014 + MER5A DNA MER1_type 56 137 -52 1168 199 71 22 chr3 35813965 35814287 -191710291 + MER58B DNA MER1_type 4 341 0 22 0 0 0 chr3 35814386 35814408 -191710170 + AT_rich Low_complexity Low_complexity 1 22 0 190 267 0 0 chr3 35815520 35815565 -191709013 - L2 LINE L2 -2 3311 3267 303 286 20 0 chr3 35815621 35815719 -191708859 - MLT1J2 LTR MaLR -5 445 346 417 235 26 17 chr3 35815816 35815931 -191708647 - MLT1J2 LTR MaLR -334 116 1 306 222 44 11 chr3 35816165 35816255 -191708323 - MIR SINE MIR -66 196 104 734 224 92 9 chr3 35816656 35816884 -191707694 + L1ME3A LINE L1 5422 5668 -496 234 0 0 0 chr3 35816889 35816915 -191707663 + (CA)n Simple_repeat Simple_repeat 1 26 0 2021 199 24 49 chr3 35816926 35817458 -191707120 - Charlie1b DNA MER1_type -4 519 1 356 335 106 13 chr3 35817506 35817742 -191706836 + L1ME3A LINE L1 5683 5940 -230 1485 40 0 0 chr3 35818849 35819026 -191705552 - L1PA3 LINE L1 -3 6152 5976 1223 198 115 54 chr3 35819269 35819642 -191704936 + MSTD LTR MaLR 1 396 0 313 265 226 57 chr3 35820519 35820714 -191703864 + MLT1H1 LTR MaLR 65 290 -265 440 154 5 0 chr3 35821027 35821115 -191703463 + MLT1H1 LTR MaLR 482 555 0 2128 121 0 0 chr3 35823531 35823863 -191700715 - AluSx SINE Alu 0 332 1 973 203 158 0 chr3 35824052 35824293 -191700285 - LTR16C LTR ERVL 0 491 213 208 365 20 54 chr3 35824696 35824844 -191699734 + L2 LINE L2 2909 3051 -221 458 293 110 10 chr3 35825107 35825314 -191699264 + MIR SINE MIR 20 246 -16 703 237 57 34 chr3 35825432 35825609 -191698969 - MER5A DNA MER1_type -3 186 6 703 223 13 25 chr3 35825647 35825804 -191698774 - MER5B DNA MER1_type -18 160 6 583 208 164 19 chr3 35825838 35825997 -191698581 + MER5A DNA MER1_type 8 189 0 249 252 431 8 chr3 35826927 35827050 -191697528 + MER5A DNA MER1_type 9 183 -6 246 224 41 0 chr3 35827064 35827113 -191697465 + MER5B DNA MER1_type 1 51 -127 309 143 0 0 chr3 35827263 35827305 -191697273 - 5S rRNA rRNA -79 42 1 24 0 0 0 chr3 35827637 35827661 -191696917 + AT_rich Low_complexity Low_complexity 1 24 0 679 224 107 24 chr3 35827988 35828193 -191696385 - MER58A DNA MER1_type -1 223 2 324 325 124 0 chr3 35829542 35829711 -191694867 - MIR SINE MIR -65 197 8 293 149 0 0 chr3 35830113 35830160 -191694418 - MER94 DNA DNA -77 57 11 184 250 83 0 chr3 35832311 35832359 -191692219 + MIR SINE MIR 45 96 -112 222 299 0 0 chr3 35832479 35832546 -191692032 - L2 LINE L2 -1358 1956 1890 255 31 0 0 chr3 35833151 35833183 -191691395 + (CA)n Simple_repeat Simple_repeat 2 33 0 21 71 0 0 chr3 35833189 35833231 -191691347 + AT_rich Low_complexity Low_complexity 1 42 0 250 143 32 32 chr3 35833413 35833476 -191691102 + CT-rich Low_complexity Low_complexity 2 64 0 283 306 63 9 chr3 35833752 35833863 -191690715 - MIR SINE MIR -65 197 81 405 58 0 0 chr3 35834049 35834101 -191690477 + (TG)n Simple_repeat Simple_repeat 2 53 0 269 200 100 0 chr3 35834101 35834161 -191690417 - MER112 DNA MER1_type -194 66 1 1893 173 61 6 chr3 35834357 35834703 -191689875 + MLT1A1 LTR MaLR 1 365 0 213 121 0 0 chr3 35835553 35835586 -191688992 + (GA)n Simple_repeat Simple_repeat 2 34 0 1815 148 50 28 chr3 35835668 35836025 -191688553 + MLT1A1 LTR MaLR 1 365 0 324 251 220 26 chr3 35836465 35836656 -191687922 + MLT1H1 LTR MaLR 48 278 -312 1774 141 30 7 chr3 35836660 35836965 -191687613 - L1MC3 LINE L1 -149 7636 7325 887 201 47 23 chr3 35836961 35837548 -191687030 - L1M4 LINE L1 -1137 5820 4941 * 3649 141 60 43 chr3 35837549 35837564 -191687014 - LTR8A LTR ERV1 0 727 714 3991 88 18 0 chr3 35837564 35838107 -191686471 + MER41A LTR ERV1 2 554 0 3649 141 60 43 chr3 35838107 35838806 -191685772 - LTR8A LTR ERV1 -13 714 1 5621 230 39 75 chr3 35838806 35839262 -191685316 - L1M4 LINE L1 -2014 4943 4472 3032 57 5 3 chr3 35839262 35839647 -191684931 - L1PA6 LINE L1 -3 6151 5766 5621 230 39 75 chr3 35839647 35839726 -191684852 - L1M4 LINE L1 -2485 4472 4392 2089 156 0 3 chr3 35839726 35840034 -191684544 - AluJb SINE Alu -2 310 4 5621 230 39 75 chr3 35840034 35841710 -191682868 - L1M4 LINE L1 -2565 4392 2658 1542 69 15 0 chr3 35841710 35841914 -191682664 - L1PA5 LINE L1 -3 6151 5945 5621 230 39 75 chr3 35841914 35842703 -191681875 - L1M4 LINE L1 -4299 2658 1842 2178 186 14 30 chr3 35842703 35842905 -191681673 + Tigger2a DNA MER2_type 1 205 -2503 2159 137 0 0 chr3 35842905 35843211 -191681367 - AluSx SINE Alu -6 306 1 2178 186 14 30 chr3 35843211 35843449 -191681129 + Tigger2a DNA MER2_type 205 434 0 5621 230 39 75 chr3 35843449 35844293 -191680285 - L1M4 LINE L1 -5115 1842 1271 214 50 50 0 chr3 35844293 35844333 -191680245 + (TTTG)n Simple_repeat Simple_repeat 4 45 0 5621 230 39 75 chr3 35844333 35844524 -191680054 - L1M4 LINE L1 -5686 1271 1075 252 407 34 0 chr3 35845094 35845212 -191679366 - L2 LINE L2 -6 3266 3145 303 302 38 9 chr3 35845832 35845938 -191678640 + MIR SINE MIR 102 210 -52 192 302 47 47 chr3 35846434 35846540 -191678038 + L2 LINE L2 3145 3250 -22 275 284 138 28 chr3 35846678 35846787 -191677791 - L2 LINE L2 0 3313 3193 44 20 0 0 chr3 35848506 35848557 -191676021 + AT_rich Low_complexity Low_complexity 1 51 0 24 67 0 0 chr3 35849899 35849944 -191674634 + AT_rich Low_complexity Low_complexity 1 45 0 222 118 0 0 chr3 35849995 35850029 -191674549 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 6496 115 81 14 chr3 35850089 35851210 -191673368 + Tigger3b DNA MER2_type 2 1197 -34 296 368 26 0 chr3 35852262 35852376 -191672202 - L2 LINE L2 0 3313 3197 772 243 116 45 chr3 35852518 35852941 -191671637 + MLT1L LTR MaLR 59 615 0 234 222 69 14 chr3 35853512 35853584 -191670994 + L1M4c LINE L1 2423 2498 -3886 2056 128 3 7 chr3 35853637 35853933 -191670645 + AluSq SINE Alu 1 295 -18 1193 210 33 47 chr3 35854578 35854854 -191669724 - MSTD LTR MaLR 0 396 125 735 335 70 20 chr3 35855490 35855592 -191668986 - LTR16A LTR ERVL 0 450 355 1441 229 41 33 chr3 35855592 35855985 -191668593 - MSTD LTR MaLR 0 396 1 735 335 70 20 chr3 35855985 35856225 -191668353 - LTR16A LTR ERVL -95 355 91 1067 312 31 48 chr3 35856226 35856438 -191668140 - HERV16 LTR ERVL -2369 2627 2413 1115 186 9 23 chr3 35856438 35856659 -191667919 - MER20 DNA MER1_type -1 218 1 1067 312 31 48 chr3 35856659 35856927 -191667651 - HERV16 LTR ERVL -2583 2413 2155 1976 49 0 8 chr3 35857040 35857284 -191667294 + AluY SINE Alu 66 307 -4 363 193 0 0 chr3 35857285 35857342 -191667236 - MER58 DNA MER1_type -2168 252 196 1719 212 3 8 chr3 35857353 35857716 -191666862 - L1PB4 LINE L1 -4 6152 5790 351 113 0 0 chr3 35857716 35857769 -191666809 + (TA)n Simple_repeat Simple_repeat 1 53 0 1719 212 3 8 chr3 35857769 35857787 -191666791 - L1PB4 LINE L1 -366 5790 5773 1777 149 19 28 chr3 35857784 35858312 -191666266 - L1PB4 LINE L1 -744 5402 5023 198 323 73 89 chr3 35858561 35858809 -191665769 + L2 LINE L2 2512 2755 -559 1438 317 135 33 chr3 35859447 35860608 -191663970 - L2 LINE L2 -246 3067 1793 346 259 266 6 chr3 35861477 35861635 -191662943 - L3 LINE CR1 -2 1575 1377 198 259 0 62 chr3 35862232 35862313 -191662265 + MIR SINE MIR 79 154 -108 2201 119 0 3 chr3 35862995 35863305 -191661273 - AluSg SINE Alu -1 309 1 918 290 37 53 chr3 35863320 35863696 -191660882 - MLT1J1 LTR MaLR -8 438 69 1573 238 70 79 chr3 35864763 35865050 -191659528 + MER20B DNA MER1_type 8 296 -487 224 29 0 29 chr3 35865050 35865084 -191659494 + (TTTA)n Simple_repeat Simple_repeat 4 36 0 666 198 0 0 chr3 35865088 35865204 -191659374 - FLAM_C SINE Alu -17 116 1 1573 238 70 79 chr3 35865204 35865541 -191659037 + MER20B DNA MER1_type 299 631 -152 26 0 0 0 chr3 35866212 35866238 -191658340 + AT_rich Low_complexity Low_complexity 1 26 0 420 298 131 5 chr3 35866481 35866672 -191657906 - LTR33 LTR ERVL -1 520 306 254 319 60 26 chr3 35866733 35866849 -191657729 - LTR33A LTR ERVL -331 192 73 300 272 0 25 chr3 35867171 35867252 -191657326 - L2 LINE L2 -5 3308 3230 269 286 16 0 chr3 35867339 35867402 -191657176 + MLT1K LTR MaLR 141 204 -384 194 237 246 70 chr3 35867690 35867804 -191656774 - MER5A DNA MER1_type -1 188 55 37 62 0 0 chr3 35868127 35868192 -191656386 + AT_rich Low_complexity Low_complexity 1 65 0 493 220 70 85 chr3 35868498 35868698 -191655880 - L2 LINE L2 -10 3303 3107 969 167 30 0 chr3 35868734 35868902 -191655676 + FRAM SINE Alu 1 171 -5 184 0 62 31 chr3 35869321 35869353 -191655225 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 2058 111 7 0 chr3 35870511 35870790 -191653788 + AluY SINE Alu 1 281 -30 306 0 0 0 chr3 35870811 35870845 -191653733 + (TA)n Simple_repeat Simple_repeat 2 35 0 315 326 83 10 chr3 35870845 35871146 -191653432 + L1M4 LINE L1 2484 2806 -3340 319 353 22 7 chr3 35871214 35871353 -191653225 - MIR3 SINE MIR -1 207 67 354 314 89 26 chr3 35871370 35871561 -191653017 + MIR SINE MIR 14 216 -46 1448 203 178 51 chr3 35872238 35872710 -191651868 - MLT1H LTR MaLR -16 533 2 2239 127 3 29 chr3 35872832 35873178 -191651400 + MER1B DNA MER1_type 1 337 0 34 0 0 0 chr3 35873888 35873922 -191650656 + AT_rich Low_complexity Low_complexity 1 34 0 517 56 14 0 chr3 35873922 35873993 -191650585 - L1PA16 LINE L1 -9 6157 6086 3696 99 2 25 chr3 35874164 35874728 -191649850 + L1PB1 LINE L1 5600 6150 -1 21 0 0 0 chr3 35874728 35874749 -191649829 + AT_rich Low_complexity Low_complexity 1 21 0 256 65 87 22 chr3 35876194 35876240 -191648338 - MADE1 DNA Mariner -4 76 28 420 111 0 0 chr3 35876264 35876327 -191648251 + (TA)n Simple_repeat Simple_repeat 2 64 0 21 57 0 0 chr3 35876669 35876704 -191647874 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 35876769 35876791 -191647787 + AT_rich Low_complexity Low_complexity 1 22 0 261 219 57 19 chr3 35876845 35876950 -191647628 + L1MC/D LINE L1 5213 5321 -825 296 300 67 36 chr3 35877040 35877293 -191647285 + L1MC/D LINE L1 5469 5729 -392 341 254 363 7 chr3 35877349 35877563 -191647015 - MLT1G LTR MaLR 0 590 453 1782 166 169 5 chr3 35877563 35877931 -191646647 - MSTA LTR MaLR 0 428 1 341 254 363 7 chr3 35877931 35878011 -191646567 - MLT1G LTR MaLR -137 453 191 230 231 0 0 chr3 35878282 35878334 -191646244 + L1MC/D LINE L1 5860 5911 -1897 11792 175 9 20 chr3 35878455 35880817 -191643761 + L1PA12 LINE L1 1459 4586 -2998 453 132 0 0 chr3 35880817 35880879 -191643699 + L1PA8 LINE L1 6092 6159 -13 2242 110 3 0 chr3 35880940 35881239 -191643339 + AluSx SINE Alu 5 304 -8 301 304 99 35 chr3 35881424 35881595 -191642983 - MLT1J2 LTR MaLR -2 448 267 358 254 19 1 chr3 35881647 35881758 -191642820 - MLT1J2 LTR MaLR -232 177 68 874 249 9 28 chr3 35882013 35882226 -191642352 - MER63A DNA MER1_type 0 210 2 285 345 58 14 chr3 35882370 35882509 -191642069 + MIR3 SINE MIR 37 181 -27 631 254 142 45 chr3 35882824 35883224 -191641354 - MLT1H1 LTR MaLR 0 555 69 516 266 61 41 chr3 35883694 35884187 -191640391 + L1ME LINE L1 5149 5639 -523 285 198 81 99 chr3 35884435 35884546 -191640032 + MER70A LTR ERVL 342 450 -22 260 294 0 0 chr3 35884618 35884686 -191639892 + MLT1J LTR MaLR 94 161 -350 226 318 65 0 chr3 35884655 35884762 -191639816 + MLT1L LTR MaLR 195 308 -307 * 324 347 25 16 chr3 35885055 35885176 -191639402 - MIR SINE MIR -100 162 41 371 395 65 19 chr3 35885196 35885457 -191639121 - L3 LINE CR1 -375 1202 930 1797 179 0 0 chr3 35885463 35885765 -191638813 + AluJo SINE Alu 1 302 -10 488 257 52 29 chr3 35886000 35886136 -191638442 + L2 LINE L2 3175 3313 0 560 336 89 0 chr3 35887875 35888146 -191636432 + L1MC4a LINE L1 5522 5816 -1992 26 0 0 0 chr3 35888363 35888389 -191636189 + AT_rich Low_complexity Low_complexity 1 26 0 409 204 9 18 chr3 35889709 35889822 -191634756 + (TATATG)n Simple_repeat Simple_repeat 5 116 0 282 259 60 65 chr3 35889967 35890152 -191634426 - HAL1 LINE L1 -1 2506 2323 1395 264 105 61 chr3 35890252 35891208 -191633370 - HAL1 LINE L1 -1063 1444 424 295 321 171 7 chr3 35891829 35891969 -191632609 - MIR SINE MIR -72 190 28 229 296 169 35 chr3 35892725 35892897 -191631681 - L2 LINE L2 -4 3309 3115 843 278 71 42 chr3 35893212 35893637 -191630941 - L2 LINE L2 -73 3240 2804 287 327 65 28 chr3 35893741 35893848 -191630730 - L2 LINE L2 -514 2800 2690 10516 52 3 1 chr3 35893848 35895186 -191629392 - L1PA5 LINE L1 -3295 2851 1511 * 11204 45 1 5 chr3 35895173 35896589 -191627989 + L1PA5 LINE L1 2819 4228 -1918 4557 58 5 3 chr3 35896590 35897164 -191627414 + L1PA5 LINE L1 5580 6154 0 235 371 0 11 chr3 35897290 35897379 -191627199 - L3 LINE CR1 -1 1576 1489 267 297 57 27 chr3 35897456 35897598 -191626980 + MIR SINE MIR 3 146 -62 2689 139 21 38 chr3 35897917 35898392 -191626186 - MLT1C LTR MaLR 0 467 1 964 261 138 54 chr3 35898866 35899256 -191625322 + LTR16C LTR ERVL 1 423 -68 212 59 29 0 chr3 35899412 35899446 -191625132 + (TA)n Simple_repeat Simple_repeat 2 36 0 26 50 0 0 chr3 35899675 35899715 -191624863 + AT_rich Low_complexity Low_complexity 1 40 0 308 299 40 84 chr3 35899728 35899979 -191624599 + L1MC4a LINE L1 5822 6061 -1747 1940 139 10 7 chr3 35900334 35900622 -191623956 + AluSx SINE Alu 1 289 -23 243 0 0 0 chr3 35900625 35900652 -191623926 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 758 228 14 7 chr3 35901387 35901532 -191623046 + FRAM SINE Alu 1 146 -30 198 0 0 0 chr3 35901533 35901555 -191623023 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 2099 137 42 33 chr3 35901763 35902122 -191622456 + THE1B LTR MaLR 1 362 -2 1046 206 35 27 chr3 35902196 35902674 -191621904 - L1ME3 LINE L1 -1 6161 5567 1791 262 74 32 chr3 35902875 35903375 -191621203 - MLT1G1 LTR MaLR -2 593 73 419 252 79 109 chr3 35903423 35903541 -191621037 - MLT1H1-int LTR MaLR -19 1352 1232 1337 217 85 14 chr3 35903541 35903728 -191620850 - MLT1B LTR MaLR 0 390 218 195 42 0 0 chr3 35903728 35903752 -191620826 + (GA)n Simple_repeat Simple_repeat 2 25 0 1337 217 85 14 chr3 35903752 35903928 -191620650 - MLT1B LTR MaLR -172 218 1 419 252 79 109 chr3 35903928 35904138 -191620440 - MLT1H1-int LTR MaLR -139 1232 1034 250 270 19 120 chr3 35904755 35905014 -191619564 - MLT1H1-int LTR MaLR -827 544 312 327 234 116 33 chr3 35905038 35905194 -191619384 - MLT1H1-int LTR MaLR -1269 102 11 1935 241 41 19 chr3 35905196 35905664 -191618914 - MLT1H1 LTR MaLR -12 543 66 376 272 147 0 chr3 35905838 35905974 -191618604 + MIR SINE MIR 80 235 -27 1908 138 24 17 chr3 35906384 35906681 -191617897 + AluSx SINE Alu 5 303 -9 35 71 0 0 chr3 35906885 35906955 -191617623 + AT_rich Low_complexity Low_complexity 1 70 0 715 287 55 0 chr3 35909236 35909438 -191615140 - MIR SINE MIR -49 213 1 29 28 0 0 chr3 35909578 35909614 -191614964 + AT_rich Low_complexity Low_complexity 1 36 0 223 285 219 7 chr3 35910124 35910261 -191614317 + MIR3 SINE MIR 39 204 -4 518 176 128 39 chr3 35910763 35910915 -191613663 + L1ME1 LINE L1 6011 6334 0 323 290 0 41 chr3 35910988 35911133 -191613445 + L1MC4a LINE L1 5591 5729 -392 930 260 31 0 chr3 35911181 35911408 -191613170 + MIR SINE MIR 13 246 -16 30 59 0 0 chr3 35911536 35911587 -191612991 + AT_rich Low_complexity Low_complexity 1 51 0 227 196 22 0 chr3 35911661 35911707 -191612871 + L1MC4a LINE L1 5891 5937 -1871 320 306 91 27 chr3 35911781 35911967 -191612611 + L1MC4a LINE L1 6067 6264 -1544 204 253 11 21 chr3 35911992 35912087 -191612491 + (TA)n Simple_repeat Simple_repeat 1 94 0 1076 241 56 56 chr3 35912094 35912726 -191611852 + L1MC5 LINE L1 6324 6911 -897 1648 201 55 80 chr3 35912861 35913548 -191611030 + L1MC5 LINE L1 7238 7907 -54 388 288 116 20 chr3 35914660 35914806 -191609772 + L2 LINE L2 3109 3268 -4 1126 150 15 104 chr3 35915069 35915264 -191609314 - Tigger2a DNA MER2_type -2274 444 276 2422 74 3 6 chr3 35915264 35915575 -191609003 - AluY SINE Alu 0 311 2 1126 150 15 104 chr3 35915575 35915639 -191608939 - Tigger2a DNA MER2_type -2442 276 208 610 204 0 61 chr3 35915641 35915773 -191608805 + FLAM_A SINE Alu 1 124 -18 1265 108 19 47 chr3 35915773 35915985 -191608593 - Tigger2a DNA MER2_type -227 207 2 1511 202 20 17 chr3 35916047 35916344 -191608234 + L1M3f LINE L1 10 307 -5021 683 185 144 0 chr3 35916345 35916518 -191608060 + L1M3f LINE L1 1066 1263 -4065 637 219 52 66 chr3 35916524 35916812 -191607766 - L1M1 LINE L1 -4265 3300 3017 5443 186 31 8 chr3 35916827 35918004 -191606574 + L1 LINE L1 3527 4730 -1416 1177 114 6 0 chr3 35918026 35918192 -191606386 + THE1C LTR MaLR 209 375 0 1573 98 18 0 chr3 35918194 35918419 -191606159 + L1MA4 LINE L1 5734 5962 -338 * 12096 207 36 36 chr3 35918411 35921236 -191603342 + L1M3f LINE L1 1362 4214 -2114 1934 126 0 7 chr3 35921236 35921544 -191603034 + AluSg SINE Alu 1 306 0 12096 207 36 36 chr3 35921544 35922571 -191602007 + L1M3f LINE L1 4214 5240 -1088 330 339 34 0 chr3 35922970 35923088 -191601490 - L2 LINE L2 -1 3312 3191 21 0 0 0 chr3 35923090 35923111 -191601467 + AT_rich Low_complexity Low_complexity 1 21 0 1314 307 65 5 chr3 35923472 35923921 -191600657 + L2 LINE L2 2838 3313 0 1174 196 31 68 chr3 35924528 35924854 -191599724 + L1MD2 LINE L1 6036 6349 -10 594 213 104 6 chr3 35925638 35925821 -191598757 + L1MD3 LINE L1 7795 7995 0 454 328 33 83 chr3 35925964 35926205 -191598373 - MIR SINE MIR -14 248 20 2742 135 19 12 chr3 35926259 35926741 -191597837 - L1MA5 LINE L1 -2 6298 5814 1674 224 66 68 chr3 35927646 35928280 -191596298 - L1MC4 LINE L1 -6 8036 7404 1031 218 9 5 chr3 35928287 35928503 -191596075 + L1MC4a LINE L1 7082 7298 -510 199 304 107 9 chr3 35929042 35929154 -191595424 - L2 LINE L2 -9 3304 3182 425 299 64 19 chr3 35929332 35929489 -191595089 - MIR SINE MIR -11 251 88 242 348 36 54 chr3 35929560 35929784 -191594794 - L2 LINE L2 -551 2763 2544 2098 219 52 11 chr3 35930163 35930628 -191593950 + LTR40a LTR ERVL 33 516 -3 2795 143 19 25 chr3 35931426 35931792 -191592786 - L1MC2 LINE L1 -3 6341 5977 2901 9 0 0 chr3 35931792 35932107 -191592471 - AluYb8 SINE Alu -3 315 1 2795 143 19 25 chr3 35932107 35932259 -191592319 - L1MC2 LINE L1 -367 5977 5826 2134 105 18 0 chr3 35932259 35932561 -191592017 - AluSx SINE Alu 0 307 1 279 0 0 0 chr3 35932561 35932592 -191591986 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1142 171 63 0 chr3 35932597 35932802 -191591776 - L1MC2 LINE L1 -578 5755 5538 198 0 0 0 chr3 35932860 35932882 -191591696 + (TG)n Simple_repeat Simple_repeat 2 23 0 1492 191 144 49 chr3 35932941 35933386 -191591192 + MLT1D LTR MaLR 1 487 -18 2567 167 31 29 chr3 35933492 35934014 -191590564 + L1MB7 LINE L1 5655 6177 -7 692 323 58 15 chr3 35934298 35934623 -191589955 - MLT1I LTR MaLR -66 343 5 1584 216 116 15 chr3 35934624 35935082 -191589496 + MLT1D LTR MaLR 2 505 0 202 170 57 19 chr3 35935716 35935769 -191588809 + MIR3 SINE MIR 116 170 -38 365 111 32 0 chr3 35935909 35935972 -191588606 + CT-rich Low_complexity Low_complexity 4 68 0 1396 165 28 35 chr3 35935972 35936227 -191588351 - AluJo SINE Alu -59 253 1 1511 252 74 19 chr3 35936488 35937239 -191587339 + L2 LINE L2 2517 3313 0 201 74 0 0 chr3 35937248 35937275 -191587303 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1638 182 0 4 chr3 35937281 35937556 -191587022 - AluJo SINE Alu -38 274 1 579 244 145 16 chr3 35937566 35937759 -191586819 - MLT1L LTR MaLR -56 559 342 361 288 18 27 chr3 35937774 35937885 -191586693 - L2 LINE L2 -2 3311 3202 1548 193 0 0 chr3 35937888 35938147 -191586431 - AluJb SINE Alu -53 259 1 249 226 155 24 chr3 35938147 35938231 -191586347 - MLT1L LTR MaLR -316 299 205 2152 113 0 3 chr3 35939394 35939678 -191584900 + AluSx SINE Alu 13 295 -17 207 308 64 13 chr3 35939679 35939757 -191584821 + MIR SINE MIR 49 130 -78 543 249 81 11 chr3 35940566 35940751 -191583827 + Charlie8 DNA MER1_type 67 264 -2153 333 238 45 104 chr3 35941224 35941493 -191583085 + MER112 DNA MER1_type 1 253 -3 16001 129 39 23 chr3 35941785 35942200 -191582378 + Tigger2 DNA MER2_type 13 420 -2298 1993 118 82 28 chr3 35942200 35942556 -191582022 - THE1C LTR MaLR 0 375 1 16001 129 39 23 chr3 35942556 35943061 -191581517 + Tigger2 DNA MER2_type 420 915 -1803 1558 211 20 3 chr3 35943061 35943359 -191581219 + AluJb SINE Alu 1 303 -9 16001 129 39 23 chr3 35943359 35945099 -191579479 + Tigger2 DNA MER2_type 915 2718 0 732 277 176 44 chr3 35945145 35945672 -191578906 + MLT1L LTR MaLR 19 615 0 274 322 26 9 chr3 35945920 35946035 -191578543 - L2 LINE L2 -5 3267 3151 269 194 81 16 chr3 35947120 35947182 -191577396 - L2 LINE L2 0 3313 3248 2063 129 0 20 chr3 35947416 35947719 -191576859 + AluSx SINE Alu 1 297 -15 2378 109 3 0 chr3 35948334 35948646 -191575932 + AluSp SINE Alu 1 313 0 650 298 11 6 chr3 35949596 35949777 -191574801 + LTR33 LTR ERVL 3 184 -337 1653 208 64 3 chr3 35949866 35950256 -191574322 - Charlie1b DNA MER1_type -86 437 24 927 229 105 31 chr3 35950276 35950534 -191574044 + LTR33 LTR ERVL 194 470 -51 2291 248 38 23 chr3 35950551 35951127 -191573451 + MLT1E LTR MaLR 2 586 -7 2007 236 86 162 chr3 35951420 35952411 -191572167 - L2 LINE L2 0 3313 2297 943 188 14 81 chr3 35952411 35952634 -191571944 - MER20 DNA MER1_type -11 208 1 2007 236 86 162 chr3 35952634 35953307 -191571271 - L2 LINE L2 -1016 2297 1574 801 266 7 13 chr3 35953522 35953794 -191570784 + LTR16C LTR ERVL 187 491 0 396 152 229 0 chr3 35954411 35954516 -191570062 - MIR SINE MIR -2 260 132 5046 104 142 124 chr3 35954580 35956134 -191568444 - pTR5 LTR ERV1 0 2438 375 1954 97 4 11 chr3 35956148 35956416 -191568162 - AluSc SINE Alu 0 309 44 462 314 55 90 chr3 35956464 35956657 -191567921 + L2 LINE L2 2770 2968 -304 2093 195 108 0 chr3 35956657 35957113 -191567465 + MLT1D LTR MaLR 1 505 0 462 314 55 90 chr3 35957113 35957436 -191567142 + L2 LINE L2 2968 3270 -2 6714 143 3 12 chr3 35957567 35958612 -191565966 + L1P3 LINE L1 1 1035 -4840 414 209 109 18 chr3 36008639 36008749 -191515829 + L2 LINE L2 3193 3312 -1 26 50 0 0 chr3 36009004 36009044 -191515534 + AT_rich Low_complexity Low_complexity 1 40 0 420 296 70 0 chr3 36009180 36009295 -191515283 - MIR SINE MIR -124 138 16 354 45 0 0 chr3 36010005 36010049 -191514529 + (CA)n Simple_repeat Simple_repeat 2 45 0 3738 217 28 13 chr3 36010656 36011585 -191512993 + L1 LINE L1 3233 4175 -1971 1442 207 58 5 chr3 36012012 36012394 -191512184 + L1 LINE L1 4160 4561 -1585 1869 168 3 0 chr3 36012395 36012692 -191511886 + AluSx SINE Alu 1 298 -14 991 235 14 0 chr3 36012800 36013017 -191511561 + MLT-int LTR MaLR 517 736 -999 347 259 176 0 chr3 36013102 36013233 -191511345 - HsTC2 DNA Tc2 -1742 156 3 1755 189 3 6 chr3 36013447 36013759 -191510819 - AluJo SINE Alu 0 312 2 205 289 105 0 chr3 36014080 36014156 -191510422 - L2 LINE L2 0 3272 3189 * 219 246 123 0 chr3 36014153 36014218 -191510360 - MIR SINE MIR -98 164 92 22 0 0 0 chr3 36014326 36014348 -191510230 + AT_rich Low_complexity Low_complexity 1 22 0 2905 76 0 13 chr3 36015803 36016183 -191508395 + THE1C LTR MaLR 1 375 0 2012 159 39 29 chr3 36016309 36016693 -191507885 + MLT1B LTR MaLR 3 390 0 1773 146 23 32 chr3 36016980 36017288 -191507290 - THE1C LTR MaLR 0 375 71 28398 81 16 3 chr3 36017470 36021805 -191502773 - HERVL-A2 LTR ERVL -1217 4437 1 360 71 0 36 chr3 36021805 36021861 -191502717 - MLT2A2 LTR ERVL 0 453 400 185 62 0 31 chr3 36021866 36021898 -191502680 + (TA)n Simple_repeat Simple_repeat 2 32 0 3312 196 50 13 chr3 36021948 36023337 -191501241 + L1M4c LINE L1 1910 3345 -3037 5577 145 19 18 chr3 36023458 36024403 -191500175 - L1M4c LINE L1 -5421 963 18 32 57 0 0 chr3 36024735 36024788 -191499790 + AT_rich Low_complexity Low_complexity 1 53 0 495 229 0 37 chr3 36025774 36025883 -191498695 + AluJo SINE Alu 118 222 -90 246 62 0 0 chr3 36025891 36025923 -191498655 + (A)n Simple_repeat Simple_repeat 1 32 0 2363 80 0 3 chr3 36026447 36026759 -191497819 + AluY SINE Alu 1 311 0 255 319 79 65 chr3 36028366 36028449 -191496129 - MIR SINE MIR -32 230 150 2197 104 37 0 chr3 36028449 36028748 -191495830 - AluSx SINE Alu -2 310 1 255 319 79 65 chr3 36028748 36028880 -191495698 - MIR SINE MIR -112 150 12 197 297 126 63 chr3 36028896 36029071 -191495507 + L3 LINE CR1 1303 1488 -89 270 56 0 0 chr3 36029104 36029140 -191495438 + (TG)n Simple_repeat Simple_repeat 2 37 0 184 333 115 11 chr3 36029180 36029267 -191495311 + MIR SINE MIR 49 144 -64 573 56 9 130 chr3 36029367 36029475 -191495103 - MSTA LTR MaLR -333 95 1 10560 111 10 31 chr3 36029475 36031087 -191493491 - THE1C-int LTR MaLR 0 1580 3 2182 147 5 36 chr3 36031089 36031476 -191493102 - THE1C LTR MaLR 0 375 1 22 35 0 0 chr3 36032412 36032441 -191492137 + AT_rich Low_complexity Low_complexity 1 29 0 198 71 0 0 chr3 36033936 36033964 -191490614 + (TA)n Simple_repeat Simple_repeat 1 28 0 2145 110 3 0 chr3 36033965 36034256 -191490322 - AluSp SINE Alu -21 292 1 2305 168 3 8 chr3 36035377 36035765 -191488813 - MLT1B LTR MaLR -3 387 2 5299 174 31 28 chr3 36035978 36037212 -191487366 + L1MC1 LINE L1 5095 6332 -1 387 0 0 0 chr3 36037363 36037406 -191487172 + (CA)n Simple_repeat Simple_repeat 2 44 0 1962 247 73 79 chr3 36037434 36038212 -191486366 + L1MDa LINE L1 34 1027 -5513 686 206 49 0 chr3 36038213 36038417 -191486161 + L1MDa LINE L1 1258 1471 -5069 208 268 12 12 chr3 36038613 36038695 -191485883 + A-rich Low_complexity Low_complexity 3 84 0 808 126 7 0 chr3 36038717 36038852 -191485726 + L1PA12 LINE L1 5938 6073 -95 * 2430 41 0 0 chr3 36038840 36039154 -191485424 + L1P LINE L1 2890 3203 -2943 5530 28 18 1 chr3 36039155 36039825 -191484753 - L1PA4 LINE L1 0 6155 5475 180 247 356 0 chr3 36040353 36040426 -191484152 + MIR SINE MIR 2 100 -162 1126 219 129 20 chr3 36040567 36040924 -191483654 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr3 36042702 36042724 -191481854 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 36043413 36043435 -191481143 + AT_rich Low_complexity Low_complexity 1 22 0 284 277 68 68 chr3 36044946 36045094 -191479484 + MIR SINE MIR 40 187 -75 186 118 0 0 chr3 36045462 36045496 -191479082 + (A)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr3 36047856 36047878 -191476700 + AT_rich Low_complexity Low_complexity 1 22 0 33 0 0 0 chr3 36048697 36048730 -191475848 + AT_rich Low_complexity Low_complexity 1 33 0 5256 48 1 18 chr3 36049359 36050065 -191474513 - L1P LINE L1 -2248 3898 3205 14665 21 12 1 chr3 36050071 36052674 -191471904 + L1PA4 LINE L1 3606 6152 -3 630 132 0 0 chr3 36052684 36052790 -191471788 + L1PA13 LINE L1 6055 6160 -3 27 29 0 0 chr3 36052901 36052935 -191471643 + AT_rich Low_complexity Low_complexity 1 34 0 930 238 204 16 chr3 36053202 36053698 -191470880 + L1M4 LINE L1 2660 3248 -2898 774 310 92 4 chr3 36054224 36054463 -191470115 - MIR SINE MIR -1 261 2 24 0 8 0 chr3 36054561 36054622 -191469956 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr3 36054701 36054742 -191469836 + AT_rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr3 36055008 36055029 -191469549 + AT_rich Low_complexity Low_complexity 1 21 0 604 290 80 51 chr3 36055413 36055961 -191468617 - L1M4 LINE L1 -1995 4151 3588 328 268 55 16 chr3 36056120 36056303 -191468275 - L1M4 LINE L1 -2975 3171 2982 500 247 91 105 chr3 36056391 36057115 -191467463 - L1M4 LINE L1 -3316 2830 2117 2065 132 23 0 chr3 36057529 36057832 -191466746 + AluSx SINE Alu 1 310 -2 739 263 105 13 chr3 36058196 36058500 -191466078 + Charlie7 DNA MER1_type 89 420 -2192 1985 153 36 53 chr3 36058670 36058948 -191465630 - MLT-int LTR MaLR -1331 404 133 2075 118 7 0 chr3 36058948 36059252 -191465326 + AluSq SINE Alu 1 306 0 1985 153 36 53 chr3 36059252 36059383 -191465195 - MLT-int LTR MaLR -1602 133 1 539 128 70 32 chr3 36059404 36059515 -191465063 - MLT1A1 LTR MaLR -263 102 1 * 548 162 126 24 chr3 36059515 36059680 -191464898 + HsTC2 DNA Tc2 1569 1750 -148 8700 190 19 4 chr3 36059686 36063322 -191461256 - L1PB1 LINE L1 -3 6864 3167 9046 205 56 3 chr3 36063331 36063515 -191461063 - L1PB1 LINE L1 -3894 2969 2796 2504 65 3 0 chr3 36063515 36063824 -191460754 - AluY SINE Alu -1 310 1 9046 205 56 3 chr3 36063824 36066315 -191458263 - L1PB1 LINE L1 -4067 2796 7 261 222 0 0 chr3 36066315 36066378 -191458200 + HsTC2 DNA Tc2 1744 1806 -92 1421 197 13 39 chr3 36066380 36066689 -191457889 + MLT1A1 LTR MaLR 52 352 -13 21 0 0 0 chr3 36067037 36067058 -191457520 + AT_rich Low_complexity Low_complexity 1 21 0 2010 148 0 0 chr3 36067058 36067349 -191457229 - AluSx SINE Alu -21 291 1 2082 152 0 0 chr3 36067594 36067890 -191456688 - AluSx SINE Alu -16 296 1 273 281 34 34 chr3 36068527 36068616 -191455962 + MIR3 SINE MIR 111 199 -9 7925 187 36 13 chr3 36068695 36071255 -191453323 - L1MA9 LINE L1 -5 6307 3682 183 267 395 0 chr3 36071590 36071676 -191452902 - MIR SINE MIR -19 243 124 392 242 188 31 chr3 36072196 36072419 -191452159 + MER112 DNA MER1_type 2 259 -1 442 148 40 69 chr3 36073849 36073950 -191450628 + MER58B DNA MER1_type 244 341 0 381 130 58 0 chr3 36074322 36074391 -191450187 + AluJ/FRAM SINE Alu 230 302 0 22 80 0 0 chr3 36075570 36075620 -191448958 + AT_rich Low_complexity Low_complexity 1 50 0 26 0 0 0 chr3 36075915 36075941 -191448637 + AT_rich Low_complexity Low_complexity 1 26 0 355 214 126 0 chr3 36076217 36076320 -191448258 + MER103 DNA DNA 5 120 -46 181 281 31 31 chr3 36077492 36077556 -191447022 + L3 LINE CR1 1493 1556 -21 22 70 0 0 chr3 36080782 36080825 -191443753 + AT_rich Low_complexity Low_complexity 1 43 0 2102 116 10 0 chr3 36081450 36081744 -191442834 - AluSq SINE Alu -16 297 1 673 249 71 0 chr3 36083194 36083363 -191441215 + MIR SINE MIR 37 217 -45 206 32 32 0 chr3 36083898 36083929 -191440649 + (CA)n Simple_repeat Simple_repeat 1 32 0 580 320 6 11 chr3 36084042 36084220 -191440358 - MIR SINE MIR -40 222 46 307 280 60 28 chr3 36085514 36085696 -191438882 + MER5A DNA MER1_type 1 188 -1 496 246 262 6 chr3 36086393 36086576 -191438002 - MIR SINE MIR -12 250 21 369 292 99 18 chr3 36086684 36086855 -191437723 - MIR SINE MIR -32 230 46 292 311 116 79 chr3 36087548 36087789 -191436789 - MIR SINE MIR -5 257 8 357 321 106 7 chr3 36087791 36087945 -191436633 - MIR SINE MIR -33 175 1 21 36 0 0 chr3 36089420 36089448 -191435130 + GC_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 36091411 36091436 -191433142 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr3 36091514 36091538 -191433040 + AT_rich Low_complexity Low_complexity 1 24 0 369 0 0 0 chr3 36092400 36092441 -191432137 + (CA)n Simple_repeat Simple_repeat 1 41 0 504 276 49 72 chr3 36092518 36092782 -191431796 + Charlie2 DNA MER1_type 1 258 -2524 1623 223 129 43 chr3 36092782 36093175 -191431403 + Charlie2 DNA MER1_type 1856 2214 -648 1900 153 3 3 chr3 36093175 36093470 -191431108 + AluSx SINE Alu 1 295 -17 1623 223 129 43 chr3 36093470 36093821 -191430757 + Charlie2 DNA MER1_type 2214 2664 -198 346 167 45 45 chr3 36094256 36094322 -191430256 - L2 LINE L2 0 3313 3248 13119 53 14 1 chr3 36094440 36096145 -191428433 + L1P LINE L1 3301 5027 -1119 544 245 48 0 chr3 36096247 36096394 -191428184 - L1ME LINE L1 -613 5557 5404 2326 203 35 26 chr3 36096436 36096982 -191427596 - MER74A LTR ERVL -3 555 5 370 267 59 15 chr3 36097058 36097193 -191427385 - L1ME LINE L1 -772 5394 5254 5072 122 50 13 chr3 36097222 36098089 -191426489 - L1PA13 LINE L1 -7 6156 5258 455 170 80 0 chr3 36098135 36098247 -191426331 - L1MB1 LINE L1 -22 6644 6524 * 2975 178 28 14 chr3 36098241 36099282 -191425296 - L1MB1 LINE L1 -348 6318 5269 1015 146 6 12 chr3 36099282 36099453 -191425125 - Tigger4(Zombi) DNA MER2_type -3 2728 2559 340 182 0 0 chr3 36099441 36099507 -191425071 + Tigger4(Zombi) DNA MER2_type 2541 2606 -125 * 594 220 115 11 chr3 36099508 36099690 -191424888 - L1MB1 LINE L1 -1325 5319 5119 267 136 0 0 chr3 36099689 36099733 -191424845 - L1M3 LINE L1 -683 5488 5445 * 293 239 240 20 chr3 36099752 36099901 -191424677 - L1MB1 LINE L1 -3540 3104 2989 2205 86 0 57 chr3 36099901 36100216 -191424362 - AluY SINE Alu -14 297 1 293 239 240 20 chr3 36100216 36100473 -191424105 - L1MB1 LINE L1 -3655 2989 2618 1640 178 80 93 chr3 36102556 36103083 -191421495 - MLT2B1 LTR ERVL 0 520 1 2158 61 14 7 chr3 36103421 36103714 -191420864 - L1PA5 LINE L1 0 6154 5860 5982 193 52 34 chr3 36103836 36105477 -191419101 - L1 LINE L1 -2426 5139 3463 372 43 0 0 chr3 36105956 36106002 -191418576 + (TG)n Simple_repeat Simple_repeat 1 46 0 218 304 38 38 chr3 36106524 36106603 -191417975 + MIR SINE MIR 63 141 -121 420 193 67 52 chr3 36107034 36107169 -191417409 + L1MC4 LINE L1 7745 7881 -161 1970 196 30 25 chr3 36107285 36107683 -191416895 + MLT2D LTR ERVL 7 406 -8 1617 240 71 23 chr3 36107688 36108122 -191416456 + ERVL-D LTR ERVL 2 456 -5308 2480 165 55 8 chr3 36108122 36109014 -191415564 + ERVL-D LTR ERVL 4782 5738 -26 464 243 45 101 chr3 36109015 36109033 -191415545 - L1MB1 LINE L1 -6308 234 217 2040 182 22 27 chr3 36109033 36109446 -191415132 + MLT2D LTR ERVL 1 411 -3 464 243 45 101 chr3 36109446 36109674 -191414904 - L1MB1 LINE L1 -6325 217 2 603 221 0 29 chr3 36109694 36109866 -191414712 + L1MC4 LINE L1 7875 8041 -1 27 0 0 0 chr3 36109988 36110015 -191414563 + AT_rich Low_complexity Low_complexity 1 27 0 25 0 0 0 chr3 36110759 36110784 -191413794 + AT_rich Low_complexity Low_complexity 1 25 0 1167 242 15 74 chr3 36110900 36111293 -191413285 - MLT1A2 LTR MaLR -4 370 1 308 272 34 75 chr3 36111429 36111576 -191413002 + L1M4 LINE L1 3663 3803 -2343 299 206 42 0 chr3 36112205 36112297 -191412281 + L1M4 LINE L1 3855 3950 -2196 2008 122 0 10 chr3 36112440 36112735 -191411843 + AluSx SINE Alu 1 292 -20 490 333 11 6 chr3 36112909 36113086 -191411492 + GA-rich Low_complexity Low_complexity 3 180 0 223 281 0 84 chr3 36113118 36113296 -191411282 + A-rich Low_complexity Low_complexity 2 164 0 228 188 0 0 chr3 36113310 36113342 -191411236 + A-rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr3 36113370 36113394 -191411184 + AT_rich Low_complexity Low_complexity 1 24 0 381 277 28 66 chr3 36113504 36113717 -191410861 - L1MC/D LINE L1 -1991 5817 5613 278 247 144 10 chr3 36114048 36114145 -191410433 + MIR3 SINE MIR 88 197 -11 216 163 0 0 chr3 36114334 36114377 -191410201 + (TA)n Simple_repeat Simple_repeat 1 43 0 306 0 0 0 chr3 36114378 36114412 -191410166 + (TG)n Simple_repeat Simple_repeat 2 35 0 418 302 83 71 chr3 36114421 36114673 -191409905 + MIR SINE MIR 1 255 -7 7367 37 0 3 chr3 36114791 36115903 -191408675 - L1PA7 LINE L1 -2 6152 5040 2231 167 96 5 chr3 36117206 36117655 -191406923 - LTR54B LTR ERV1 -7 491 2 623 177 41 14 chr3 36117684 36117831 -191406747 - L1ME2 LINE L1 0 6164 6014 1507 135 139 8 chr3 36117900 36118152 -191406426 - AluJb SINE Alu -17 295 11 22 0 0 0 chr3 36119980 36120002 -191404576 + AT_rich Low_complexity Low_complexity 1 22 0 1703 178 0 7 chr3 36120054 36120340 -191404238 + AluJb SINE Alu 2 285 -27 22 0 0 0 chr3 36120454 36120476 -191404102 + AT_rich Low_complexity Low_complexity 1 22 0 277 71 71 0 chr3 36122215 36122285 -191402293 + (TA)n Simple_repeat Simple_repeat 2 76 0 643 231 15 0 chr3 36122409 36122543 -191402035 - MER5A DNA MER1_type -1 188 53 271 311 23 45 chr3 36122431 36122563 -191402015 + MER5A DNA MER1_type 35 163 -26 * 451 213 102 0 chr3 36122657 36122784 -191401794 + MLT1D LTR MaLR 1 140 -365 355 239 68 0 chr3 36122816 36122904 -191401674 + MLT1C LTR MaLR 369 462 -5 241 333 36 18 chr3 36123185 36123296 -191401282 - MIR3 SINE MIR -94 114 2 242 164 148 0 chr3 36123628 36123689 -191400889 - AluSc SINE Alu -4 295 226 43 35 0 0 chr3 36123941 36123998 -191400580 + AT_rich Low_complexity Low_complexity 1 57 0 23 33 0 0 chr3 36124197 36124227 -191400351 + AT_rich Low_complexity Low_complexity 1 30 0 470 304 66 61 chr3 36124301 36124663 -191399915 - L1MEd LINE L1 -3314 2815 2452 1163 155 60 20 chr3 36124666 36125026 -191399552 - MSTB1 LTR MaLR 0 432 1 250 287 61 6 chr3 36125058 36125222 -191399356 - L1MEd LINE L1 -3708 2421 2249 1782 147 3 38 chr3 36125222 36125544 -191399034 - AluSx SINE Alu 0 315 4 4059 180 67 10 chr3 36125572 36126962 -191397616 - L1MB7 LINE L1 0 6184 4718 460 273 108 6 chr3 36126965 36127141 -191397437 + MLT1H LTR MaLR 41 234 -315 180 271 29 86 chr3 36127596 36127666 -191396912 - L2 LINE L2 -43 3270 3205 25 31 0 0 chr3 36128624 36128656 -191395922 + AT_rich Low_complexity Low_complexity 1 32 0 1924 164 0 22 chr3 36128892 36129204 -191395374 - AluSx SINE Alu -7 305 1 622 277 29 39 chr3 36129205 36129515 -191395063 - L1MEd LINE L1 -4916 1203 897 870 231 40 44 chr3 36129613 36129911 -191394667 - L1ME3A LINE L1 0 6170 5874 308 356 63 72 chr3 36130185 36130547 -191394031 - L1MEd LINE L1 -5716 403 45 22 0 0 0 chr3 36133273 36133295 -191391283 + AT_rich Low_complexity Low_complexity 1 22 0 2060 125 7 118 chr3 36133656 36134027 -191390551 + MLT1B LTR MaLR 1 317 -73 2116 125 10 0 chr3 36134027 36134332 -191390246 - AluSp SINE Alu -5 308 1 2060 125 7 118 chr3 36134332 36134399 -191390179 + MLT1B LTR MaLR 317 390 0 1165 182 5 5 chr3 36134419 36134628 -191389950 - AluJo SINE Alu -20 292 84 2119 134 61 3 chr3 36134650 36134992 -191389586 + Tigger2a DNA MER2_type 1 362 -72 922 68 0 31 chr3 36135134 36135296 -191389282 + (TA)n Simple_repeat Simple_repeat 1 157 0 363 398 11 0 chr3 36135361 36135537 -191389041 - L2 LINE L2 -708 2606 2429 526 305 47 30 chr3 36135556 36135789 -191388789 - L2 LINE L2 -1311 2003 1767 2385 69 0 28 chr3 36135931 36136250 -191388328 + AluY SINE Alu 1 310 -1 325 111 0 32 chr3 36136459 36136522 -191388056 - L1MB7 LINE L1 -9 6175 6115 216 361 92 8 chr3 36137353 36137472 -191387106 + L2 LINE L2 3143 3271 -1 309 390 35 0 chr3 36137581 36137781 -191386797 + MIR SINE MIR 46 252 -10 21 0 0 0 chr3 36138506 36138527 -191386051 + AT_rich Low_complexity Low_complexity 1 21 0 953 226 30 13 chr3 36139465 36139699 -191384879 + L1PB3 LINE L1 1251 1488 -5077 * 1681 208 25 53 chr3 36139688 36140039 -191384539 + L1PB3 LINE L1 3060 3419 -4146 4349 100 19 11 chr3 36140039 36140708 -191383870 + L1MA1 LINE L1 5623 6297 -5 1681 208 25 53 chr3 36140708 36141347 -191383231 + L1PB3 LINE L1 3419 4019 -3546 5043 182 27 45 chr3 36141358 36142440 -191382138 + L1PB3 LINE L1 5689 6737 -836 1968 123 3 27 chr3 36142440 36142772 -191381806 + AluSx SINE Alu 1 325 0 5043 182 27 45 chr3 36142772 36143592 -191380986 + L1PB3 LINE L1 6737 7570 -3 280 186 44 9 chr3 36144250 36144363 -191380215 + GA-rich Low_complexity Low_complexity 4 120 0 695 153 5 163 chr3 36144365 36144561 -191380017 + MER31B LTR ERV1 1 165 -301 23 0 0 0 chr3 36144563 36144586 -191379992 + AT_rich Low_complexity Low_complexity 1 23 0 879 199 7 0 chr3 36144596 36144747 -191379831 - FRAM SINE Alu -28 148 1 1151 179 96 4 chr3 36144774 36145025 -191379553 + MER31B LTR ERV1 193 466 0 2223 116 3 0 chr3 36145228 36145529 -191379049 + AluSp SINE Alu 5 306 -7 1105 250 119 33 chr3 36145545 36145941 -191378637 - L1ME3A LINE L1 -33 6137 5708 42773 49 9 3 chr3 36145951 36151513 -191373065 + L1P2 LINE L1 2 5582 -573 797 67 0 0 chr3 36151513 36151610 -191372968 + L1PA4 LINE L1 6050 6154 -1 1969 127 25 3 chr3 36151610 36151924 -191372654 + L1P5 LINE L1 5465 5785 -366 447 152 200 16 chr3 36151949 36152074 -191372504 - L1ME3A LINE L1 -479 5691 5544 24 0 0 0 chr3 36152354 36152378 -191372200 + GC_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr3 36152428 36152454 -191372124 + GC_rich Low_complexity Low_complexity 1 26 0 396 0 0 0 chr3 36152473 36152517 -191372061 + (A)n Simple_repeat Simple_repeat 1 44 0 1863 207 78 2 chr3 36152517 36152991 -191371587 + L1MB3 LINE L1 4549 5058 -1088 1997 165 30 2 chr3 36152997 36153390 -191371188 + L1MB3 LINE L1 5778 6181 -2 346 261 56 53 chr3 36153705 36153833 -191370745 + MER5B DNA MER1_type 60 189 0 444 313 111 29 chr3 36154567 36154810 -191369768 + MLT1I LTR MaLR 1 263 -146 275 302 87 23 chr3 36154934 36155106 -191369472 - MIR SINE MIR -73 189 7 979 249 19 46 chr3 36155836 36155960 -191368618 + MIR SINE MIR 7 133 -129 2024 108 0 37 chr3 36155960 36156280 -191368298 - AluSg SINE Alu 0 309 1 979 249 19 46 chr3 36156280 36156414 -191368164 + MIR SINE MIR 133 260 -2 300 27 0 0 chr3 36157484 36157521 -191367057 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 2637 23 7 0 chr3 36157524 36157828 -191366750 - AluY SINE Alu -5 306 1 10797 142 10 1 chr3 36158154 36160755 -191363823 - L1PA11 LINE L1 -1 6173 3553 393 128 0 26 chr3 36161547 36161625 -191362953 - L1MB2 LINE L1 -7 6164 6089 680 246 96 5 chr3 36161824 36162023 -191362555 + MIR SINE MIR 12 228 -34 338 290 129 0 chr3 36162211 36162304 -191362274 - MIR SINE MIR -139 123 19 213 116 70 0 chr3 36162657 36162700 -191361878 + (TTTG)n Simple_repeat Simple_repeat 2 47 0 2414 87 0 0 chr3 36162773 36163084 -191361494 + AluY SINE Alu 1 311 0 506 268 112 32 chr3 36165322 36165572 -191359006 - L2 LINE L2 0 3313 3044 219 288 88 0 chr3 36165559 36165639 -191358939 - L3b LINE CR1 -137 1446 1360 * 37 0 0 0 chr3 36167112 36167149 -191357429 + AT_rich Low_complexity Low_complexity 1 37 0 826 191 14 0 chr3 36167385 36167532 -191357046 + FRAM SINE Alu 8 156 -20 365 183 0 20 chr3 36167532 36167685 -191356893 + GA-rich Low_complexity Low_complexity 1 150 0 27 29 0 0 chr3 36167800 36167834 -191356744 + AT_rich Low_complexity Low_complexity 1 34 0 292 267 64 85 chr3 36169287 36169532 -191355046 + L1MC/D LINE L1 4099 4348 -1798 3024 146 2 18 chr3 36169532 36170040 -191354538 + L1PA15 LINE L1 5665 6164 -1 292 267 64 85 chr3 36170040 36170202 -191354376 + L1MC/D LINE L1 4348 4495 -1651 2114 134 3 0 chr3 36170202 36170508 -191354070 + AluSx SINE Alu 3 309 -3 292 267 64 85 chr3 36170508 36170615 -191353963 + L1MC/D LINE L1 4495 4603 -1543 332 309 86 30 chr3 36170892 36171125 -191353453 + L1MC/D LINE L1 5127 5372 -774 1232 147 0 0 chr3 36171133 36171322 -191353256 + L1MA2 LINE L1 1252 1750 -5815 15596 151 27 23 chr3 36171444 36174083 -191350495 + L1MA2 LINE L1 1685 4311 -3412 2064 113 10 13 chr3 36174083 36174383 -191350195 + AluSc SINE Alu 1 299 -10 15596 151 27 23 chr3 36174383 36177064 -191347514 + L1MA2 LINE L1 4311 7046 -677 1958 157 3 0 chr3 36177064 36177363 -191347215 + AluSx SINE Alu 1 300 -12 15596 151 27 23 chr3 36177363 36178045 -191346533 + L1MA2 LINE L1 7046 7723 0 690 290 46 29 chr3 36178058 36178406 -191346172 + L1MC/D LINE L1 5458 5811 -1997 315 0 0 0 chr3 36178457 36178492 -191346086 + (TG)n Simple_repeat Simple_repeat 1 35 0 330 210 150 0 chr3 36178524 36178624 -191345954 + L2 LINE L2 2218 2332 -982 216 0 0 0 chr3 36178669 36178693 -191345885 + (TTG)n Simple_repeat Simple_repeat 1 24 0 318 164 27 27 chr3 36178793 36178866 -191345712 - AluJ/FLAM SINE Alu -229 73 1 1798 297 79 24 chr3 36178868 36179736 -191344842 + L2 LINE L2 2356 3263 -50 28 86 0 0 chr3 36179806 36179876 -191344702 + AT_rich Low_complexity Low_complexity 1 70 0 3019 103 0 6 chr3 36180272 36180740 -191343838 - MER1A DNA MER1_type 0 529 25 23 54 0 0 chr3 36181567 36181604 -191342974 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr3 36181704 36181733 -191342845 + AT_rich Low_complexity Low_complexity 1 29 0 420 266 108 0 chr3 36181767 36181906 -191342672 - MIR SINE MIR -13 249 96 1014 180 0 6 chr3 36181956 36182134 -191342444 - AluSg/x SINE Alu -2 310 134 5680 86 21 57 chr3 36183253 36184578 -191340000 - L1PA13 LINE L1 -8 6155 4890 1768 105 0 4 chr3 36184578 36184816 -191339762 - AluSg/x SINE Alu -2 308 72 5680 86 21 57 chr3 36184816 36184909 -191339669 - L1PA13 LINE L1 -1273 4890 4795 2190 88 3 0 chr3 36184965 36185250 -191339328 - AluSx SINE Alu -11 301 16 6981 226 52 22 chr3 36185688 36189784 -191334794 - L1MC1 LINE L1 -34 6579 2254 9919 169 99 21 chr3 36189813 36190431 -191334147 - L1MC1 LINE L1 -4057 2369 1800 1796 149 38 0 chr3 36190431 36190719 -191333859 + AluJb SINE Alu 1 299 -13 9919 169 99 21 chr3 36190719 36192297 -191332281 - L1MC1 LINE L1 -4626 1800 3 1688 162 59 37 chr3 36193025 36193433 -191331145 + Looper DNA T2_type 1 417 -1141 414 57 0 0 chr3 36193490 36193543 -191331035 + (CA)n Simple_repeat Simple_repeat 1 53 0 211 318 36 36 chr3 36193571 36193681 -191330897 - MIR SINE MIR -10 252 143 5175 127 27 1 chr3 36193682 36194612 -191329966 + L1PA15 LINE L1 5142 6161 -4 28 29 0 0 chr3 36194716 36194751 -191329827 + AT_rich Low_complexity Low_complexity 1 35 0 321 319 168 22 chr3 36195410 36195595 -191328983 + MIR SINE MIR 24 235 -27 243 161 0 0 chr3 36196928 36196984 -191327594 + T-rich Low_complexity Low_complexity 1 56 0 7897 11 0 0 chr3 36196988 36198370 -191326208 - L1PA2 LINE L1 -2 6153 4772 5795 19 0 0 chr3 36198370 36199046 -191325532 + L1PA2 LINE L1 4095 4770 -1376 1161 209 85 26 chr3 36199325 36199631 -191324947 + MER5C DNA MER1_type 1 324 0 197 306 28 14 chr3 36200259 36200331 -191324247 - MIR SINE MIR -109 153 81 296 303 178 14 chr3 36200561 36200769 -191323809 - MIR SINE MIR -1 261 20 261 281 118 85 chr3 36200982 36201228 -191323350 + MIR SINE MIR 2 255 -7 279 0 0 0 chr3 36201563 36201594 -191322984 + (TG)n Simple_repeat Simple_repeat 2 32 0 255 263 0 0 chr3 36201594 36201674 -191322904 + (TA)n Simple_repeat Simple_repeat 2 81 0 1950 115 4 0 chr3 36201806 36202076 -191322502 + AluSx SINE Alu 1 271 -41 450 0 0 0 chr3 36202103 36202153 -191322425 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 1699 154 0 18 chr3 36202572 36202844 -191321734 + AluJo SINE Alu 1 267 -45 2510 143 46 10 chr3 36203100 36203513 -191321065 - MSTA LTR MaLR 0 428 1 2295 109 0 0 chr3 36203701 36204004 -191320574 + AluSx SINE Alu 1 303 -9 183 129 0 0 chr3 36204037 36204068 -191320510 + (T)n Simple_repeat Simple_repeat 1 31 0 236 278 113 31 chr3 36204810 36204907 -191319671 - MER5B DNA MER1_type -73 105 1 202 196 0 39 chr3 36205177 36205228 -191319350 + L2 LINE L2 3264 3312 -1 2214 74 10 20 chr3 36205838 36206135 -191318443 - AluY SINE Alu -3 308 15 21 0 0 0 chr3 36206172 36206193 -191318385 + AT_rich Low_complexity Low_complexity 1 21 0 956 192 98 5 chr3 36206308 36206511 -191318067 + MER58A DNA MER1_type 2 223 -1 268 281 67 14 chr3 36207748 36207869 -191316709 + MIR SINE MIR 25 138 -124 2041 40 0 8 chr3 36207869 36208119 -191316459 + L1PA5 LINE L1 5901 6148 -6 268 281 67 14 chr3 36208119 36208177 -191316401 + MIR SINE MIR 138 262 0 26 50 0 0 chr3 36209245 36209285 -191315293 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr3 36210974 36211002 -191313576 + AT_rich Low_complexity Low_complexity 1 28 0 186 368 84 0 chr3 36211070 36211165 -191313413 + MER5B DNA MER1_type 4 106 -72 278 363 10 10 chr3 36211769 36211871 -191312707 - MIR SINE MIR -160 102 1 189 247 71 149 chr3 36211871 36211947 -191312631 + MIR3 SINE MIR 94 157 -51 263 216 45 11 chr3 36211914 36212002 -191312576 + MIR SINE MIR 122 212 -50 11033 77 7 13 chr3 36212654 36215522 -191309056 - L1PA7 LINE L1 -6 6148 3301 3621 77 0 0 chr3 36215511 36215976 -191308602 + L1PA7 LINE L1 5641 6105 -49 * 379 283 11 68 chr3 36266049 36266199 -191258379 + MER58B DNA MER1_type 162 300 -2120 2167 98 0 17 chr3 36266199 36266496 -191258082 - AluSg SINE Alu -18 292 1 379 283 11 68 chr3 36266496 36266536 -191258042 + MER58B DNA MER1_type 300 341 0 555 298 55 7 chr3 36266610 36266885 -191257693 + LTR33 LTR ERVL 184 471 -50 202 325 162 0 chr3 36267163 36267280 -191257298 - L2 LINE L2 -415 2899 2764 5607 113 10 61 chr3 36268272 36269079 -191255499 - L1PA15 LINE L1 -3 6162 5384 2502 66 0 0 chr3 36269079 36269380 -191255198 + AluY SINE Alu 1 301 -10 5607 113 10 61 chr3 36269380 36269827 -191254751 - L1PA15 LINE L1 -781 5384 4916 316 363 171 0 chr3 36270147 36270293 -191254285 - L2 LINE L2 0 3272 3102 603 286 118 29 chr3 36270324 36270562 -191254016 + MIR SINE MIR 2 260 -2 416 350 19 44 chr3 36271423 36271583 -191252995 + MER91A DNA MER1_type 2 157 -39 243 114 0 0 chr3 36272693 36272737 -191251841 - MLT2C1 LTR ERVL -4 514 357 237 218 0 0 chr3 36272750 36272828 -191251750 + (TA)n Simple_repeat Simple_repeat 1 78 0 1883 151 113 20 chr3 36272844 36273282 -191251296 - Tigger2 DNA MER2_type -22 2696 2 282 161 49 0 chr3 36273282 36273363 -191251215 + (TA)n Simple_repeat Simple_repeat 2 86 0 1636 169 30 30 chr3 36273406 36273744 -191250834 - MLT2C1 LTR ERVL -40 357 20 1154 218 36 27 chr3 36273911 36274379 -191250199 - MLT2B1 LTR ERVL -2 518 3 425 248 54 16 chr3 36274381 36274510 -191250068 + MER69A DNA AcHobo 42 175 -2 334 302 60 7 chr3 36274513 36274662 -191249916 + MIR SINE MIR 62 218 -44 280 290 57 72 chr3 36274929 36275122 -191249456 - MIR SINE MIR -33 229 40 357 323 92 24 chr3 36275286 36275450 -191249128 + MER91A DNA MER1_type 19 193 -3 881 217 0 0 chr3 36275661 36275813 -191248765 - FRAM SINE Alu -18 158 7 189 0 0 0 chr3 36275971 36275992 -191248586 + (T)n Simple_repeat Simple_repeat 1 21 0 828 160 115 30 chr3 36276270 36276470 -191248108 + MER20 DNA MER1_type 3 219 0 410 260 144 56 chr3 36277697 36278191 -191246387 - L1ME4a LINE L1 -23 6098 5549 303 283 0 0 chr3 36278342 36278448 -191246130 - L1ME4a LINE L1 -2190 3956 3851 330 286 21 42 chr3 36280480 36280672 -191243906 - HAL1 LINE L1 -2 2505 2318 317 286 131 30 chr3 36280754 36280922 -191243656 - HAL1 LINE L1 -204 2303 2119 526 287 138 25 chr3 36281279 36281634 -191242944 - HAL1 LINE L1 -2107 400 6 24 32 0 0 chr3 36281998 36282029 -191242549 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3 36282078 36282106 -191242472 + AT_rich Low_complexity Low_complexity 1 28 0 655 212 31 111 chr3 36282608 36282834 -191241744 - MIR SINE MIR -7 255 48 526 89 13 0 chr3 36282981 36283060 -191241518 - MADE1 DNA Mariner 0 80 1 295 300 54 39 chr3 36283556 36283686 -191240892 - MIR3 SINE MIR -10 198 67 1315 260 24 61 chr3 36284548 36284683 -191239895 - L1ME3A LINE L1 -74 6096 5957 2291 105 0 3 chr3 36284683 36284977 -191239601 - AluSq SINE Alu -20 293 1 1315 260 24 61 chr3 36284977 36285410 -191239168 - L1ME3A LINE L1 -213 5957 5519 184 317 145 21 chr3 36285429 36285574 -191239004 - MIR SINE MIR -74 188 26 980 107 0 13 chr3 36285587 36285727 -191238851 + MER107 DNA MER1_type 6 145 -52 182 36 0 36 chr3 36285727 36285755 -191238823 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 402 299 147 30 chr3 36286081 36286312 -191238266 + L2 LINE L2 2990 3247 -25 964 208 26 39 chr3 36286979 36287210 -191237368 + MIR SINE MIR 35 262 0 280 333 82 6 chr3 36287529 36287688 -191236890 - MIR3 SINE MIR -25 183 13 707 288 52 30 chr3 36288815 36289262 -191235316 + LTR16A LTR ERVL 1 455 -2 193 339 32 50 chr3 36289829 36290047 -191234531 - L2 LINE L2 -379 2935 2722 273 57 0 0 chr3 36290319 36290354 -191234224 + (TG)n Simple_repeat Simple_repeat 2 36 0 189 121 0 0 chr3 36290419 36290452 -191234126 + (TCTCTG)n Simple_repeat Simple_repeat 6 38 0 199 200 0 44 chr3 36292193 36292238 -191232340 + L2 LINE L2 3230 3272 0 1574 163 100 9 chr3 36292472 36292791 -191231787 - MER7A DNA MER2_type 0 346 1 475 327 77 60 chr3 36292822 36292896 -191231682 + L2 LINE L2 2560 2631 -682 996 193 0 16 chr3 36292896 36293083 -191231495 - MER5A DNA MER1_type -1 188 5 475 327 77 60 chr3 36293083 36293228 -191231350 + L2 LINE L2 2631 2772 -541 2453 133 46 12 chr3 36293228 36293414 -191231164 + MSTA LTR MaLR 1 179 -249 1881 182 0 0 chr3 36293414 36293716 -191230862 + AluSx SINE Alu 1 302 -10 2453 133 46 12 chr3 36293716 36293941 -191230637 + MSTA LTR MaLR 179 426 -2 475 327 77 60 chr3 36293941 36294450 -191230128 + L2 LINE L2 2772 3311 -2 2815 229 34 25 chr3 36294547 36295263 -191229315 - MER21B LTR ERV1 -123 740 19 386 224 13 0 chr3 36295286 36295362 -191229216 - MER21B LTR ERV1 -774 89 13 749 249 141 61 chr3 36295589 36296315 -191228263 - LTR1B LTR ERV1 0 826 43 207 0 0 0 chr3 36297227 36297250 -191227328 + (T)n Simple_repeat Simple_repeat 1 23 0 1821 234 65 18 chr3 36297355 36297851 -191226727 + LTR40a LTR ERVL 1 519 0 316 276 26 96 chr3 36298104 36298416 -191226162 + MLT1K LTR MaLR 299 588 0 269 296 0 59 chr3 36299045 36299180 -191225398 + (TATG)n Simple_repeat Simple_repeat 2 128 0 1385 189 17 31 chr3 36300604 36300953 -191223625 - MER39 LTR ERV1 0 707 364 358 244 96 9 chr3 36300979 36301094 -191223484 - MER39 LTR ERV1 -582 125 1 373 115 0 0 chr3 36301228 36301289 -191223289 + L1MA1 LINE L1 6138 6198 -104 394 100 14 14 chr3 36302171 36302241 -191222337 + (TTCTC)n Simple_repeat Simple_repeat 1 70 0 2137 116 30 0 chr3 36302241 36302544 -191222034 - AluSq SINE Alu -1 312 1 203 259 56 0 chr3 36302811 36302865 -191221713 + L2 LINE L2 3200 3256 -16 1966 219 146 8 chr3 36303248 36303315 -191221263 + Zaphod DNA AcHobo 1 57 -3974 357 62 0 0 chr3 36303315 36303363 -191221215 + (CA)n Simple_repeat Simple_repeat 2 49 0 1966 219 146 8 chr3 36303363 36303810 -191220768 + Zaphod DNA AcHobo 57 586 -3445 771 238 121 19 chr3 36303811 36304076 -191220502 + Zaphod DNA AcHobo 3739 4030 -1 384 244 12 0 chr3 36305179 36305265 -191219313 + MER58A DNA MER1_type 4 90 -17 198 0 0 0 chr3 36305265 36305287 -191219291 + (TTA)n Simple_repeat Simple_repeat 3 24 0 16287 29 2 3 chr3 36305288 36308000 -191216578 - L1PA3 LINE L1 -16 6139 3430 2754 32 3 0 chr3 36308000 36308375 -191216203 + L1PA3 LINE L1 3034 3409 -2737 728 232 0 0 chr3 36308375 36308517 -191216061 + MER58A DNA MER1_type 83 224 0 383 317 32 39 chr3 36308659 36308951 -191215627 + L1MC4a LINE L1 7110 7351 -457 245 246 0 0 chr3 36309003 36309064 -191215514 + L1MC5 LINE L1 7333 7393 -568 303 299 23 69 chr3 36309125 36309299 -191215279 + L1MC5 LINE L1 7525 7690 -271 688 296 5 5 chr3 36309709 36309898 -191214680 - L3 LINE CR1 -756 821 633 729 189 61 33 chr3 36310776 36310956 -191213622 - AluJo SINE Alu -13 299 115 616 279 76 36 chr3 36310986 36311237 -191213341 + MIR SINE MIR 2 262 0 217 254 0 0 chr3 36311241 36311296 -191213282 + (TTA)n Simple_repeat Simple_repeat 2 56 0 279 319 64 0 chr3 36311651 36311745 -191212833 - L2 LINE L2 0 3313 3214 1163 149 14 10 chr3 36311788 36311996 -191212582 + MER2 DNA MER2_type 1 209 -136 1270 173 32 5 chr3 36312008 36312228 -191212350 + AluJb SINE Alu 35 260 -52 210 261 143 88 chr3 36312339 36312577 -191212001 - L2 LINE L2 -775 2539 2289 222 277 36 48 chr3 36312923 36313006 -191211572 + MIR3 SINE MIR 90 171 -37 23 33 0 0 chr3 36313356 36313386 -191211192 + AT_rich Low_complexity Low_complexity 1 30 0 448 272 101 22 chr3 36314394 36314591 -191209987 + MIR SINE MIR 20 230 -32 268 355 74 14 chr3 36315321 36315538 -191209040 - MIR SINE MIR -10 252 23 1893 160 54 32 chr3 36318113 36318648 -191205930 - MLT2A2 LTR ERVL -8 546 1 1902 141 31 7 chr3 36318843 36319134 -191205444 - AluSx SINE Alu -14 298 1 742 229 104 25 chr3 36319248 36319488 -191205090 + MIR SINE MIR 4 262 0 430 323 42 30 chr3 36319534 36319749 -191204829 + MIR SINE MIR 16 226 -36 333 313 140 7 chr3 36320071 36320221 -191204357 + MIR SINE MIR 44 213 -49 804 287 85 18 chr3 36320259 36320649 -191203929 - LTR16A LTR ERVL -12 438 23 3919 174 57 21 chr3 36321105 36321876 -191202702 - MER21B LTR ERV1 -49 814 16 24 0 0 0 chr3 36322212 36322236 -191202342 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 36322662 36322685 -191201893 + AT_rich Low_complexity Low_complexity 1 23 0 949 228 32 9 chr3 36322834 36323053 -191201525 - MER58A DNA MER1_type 0 224 1 598 268 7 7 chr3 36323652 36323794 -191200784 + MER5B DNA MER1_type 2 143 -35 1598 212 47 55 chr3 36323794 36323961 -191200617 - MLT1D LTR MaLR 0 505 338 1565 79 51 0 chr3 36323961 36324176 -191200402 - MER30 DNA MER1_type 0 230 5 1598 212 47 55 chr3 36324176 36324517 -191200061 - MLT1D LTR MaLR -167 338 1 308 286 71 0 chr3 36324877 36324989 -191199589 - MIR SINE MIR -43 219 100 387 153 163 10 chr3 36326719 36326817 -191197761 + ERVL LTR ERVL 5652 5764 0 2047 118 0 0 chr3 36326818 36327090 -191197488 - AluSx SINE Alu -2 310 39 634 245 58 1 chr3 36327661 36327845 -191196733 + MIR SINE MIR 14 204 -58 237 235 0 0 chr3 36327849 36327934 -191196644 + (TA)n Simple_repeat Simple_repeat 1 85 0 216 226 81 0 chr3 36327991 36328053 -191196525 + MIR SINE MIR 196 262 0 218 320 0 48 chr3 36329325 36329450 -191195128 - MIR SINE MIR -56 206 88 2799 141 58 14 chr3 36331186 36331482 -191193096 - MLT2B1 LTR ERVL 0 520 192 4392 82 0 15 chr3 36331482 36332078 -191192500 - L1PA8A LINE L1 0 6131 5545 2799 141 58 14 chr3 36332078 36332279 -191192299 - MLT2B1 LTR ERVL -328 192 1 662 233 68 6 chr3 36332530 36332693 -191191885 - MER45A DNA AcHobo -4 174 2 441 308 121 11 chr3 36332723 36332996 -191191582 - MLT1J2 LTR MaLR -125 325 23 23 0 0 0 chr3 36333164 36333187 -191191391 + AT_rich Low_complexity Low_complexity 1 23 0 718 222 6 19 chr3 36334221 36334383 -191190195 + MER58B DNA MER1_type 182 341 0 2101 109 3 26 chr3 36336808 36337121 -191187457 - AluSx SINE Alu -6 306 1 348 200 271 50 chr3 36337199 36337317 -191187261 - MER5A DNA MER1_type -10 179 24 261 0 0 0 chr3 36337317 36337346 -191187232 + (CTG)n Simple_repeat Simple_repeat 1 29 0 348 200 271 50 chr3 36337346 36337367 -191187211 - MER5A DNA MER1_type -165 24 9 440 259 36 0 chr3 36337438 36337550 -191187028 + MIR SINE MIR 45 160 -102 358 308 33 0 chr3 36337582 36337673 -191186905 + L2 LINE L2 3220 3313 0 212 391 11 0 chr3 36338334 36338421 -191186157 - L2 LINE L2 -27 3245 3158 385 263 20 0 chr3 36338554 36338653 -191185925 + L2 LINE L2 3212 3312 -1 279 0 0 0 chr3 36339246 36339277 -191185301 + (A)n Simple_repeat Simple_repeat 1 31 0 2663 94 11 5 chr3 36339370 36339741 -191184837 + THE1C LTR MaLR 1 373 -2 222 300 20 50 chr3 36340525 36340625 -191183953 + MIR3 SINE MIR 66 162 -46 2580 64 0 0 chr3 36342869 36343180 -191181398 - AluY SINE Alu 0 311 1 31 26 0 0 chr3 36344337 36344375 -191180203 + AT_rich Low_complexity Low_complexity 1 38 0 396 242 42 0 chr3 36345875 36345995 -191178583 + MER94 DNA DNA 2 126 -8 190 355 120 25 chr3 36346424 36346624 -191177954 - L3 LINE CR1 -21 1556 1338 685 332 72 4 chr3 36346672 36346949 -191177629 - L3 LINE CR1 -239 1338 1043 441 330 10 95 chr3 36346960 36347160 -191177418 + MER91A DNA MER1_type 1 183 -13 413 251 19 111 chr3 36347184 36347391 -191177187 - L3 LINE CR1 -543 1034 847 355 346 88 15 chr3 36347429 36347634 -191176944 - L3 LINE CR1 -977 600 381 1016 251 70 42 chr3 36348499 36348885 -191175693 - MLT1I LTR MaLR -4 405 9 334 317 44 63 chr3 36349075 36349346 -191175232 + HAL1 LINE L1 1113 1378 -1129 215 260 10 0 chr3 36349359 36349455 -191175123 + (TA)n Simple_repeat Simple_repeat 1 97 0 2477 110 38 5 chr3 36349786 36350158 -191174420 - L1PA11 LINE L1 -2 6172 5789 609 62 0 0 chr3 36350159 36350240 -191174338 - L1PA10 LINE L1 -299 5869 5789 593 74 0 0 chr3 36350241 36350322 -191174256 - L1PA10 LINE L1 -299 5869 5789 3188 86 0 0 chr3 36350323 36350765 -191173813 - L1PA10 LINE L1 -299 5869 5428 * 12143 209 13 37 chr3 36350761 36354603 -191169975 - L1PA12 LINE L1 -2451 5133 5 404 259 185 0 chr3 36354739 36354901 -191169677 - MIR SINE MIR -58 204 13 349 285 33 46 chr3 36355128 36355352 -191169226 + L1MC/D LINE L1 5288 5508 -851 189 0 0 0 chr3 36355362 36355383 -191169195 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 276 30 0 0 chr3 36355382 36355415 -191169163 + (CA)n Simple_repeat Simple_repeat 2 34 0 193 123 27 68 chr3 36355598 36355671 -191168907 + GA-rich Low_complexity Low_complexity 3 72 0 671 276 12 6 chr3 36355671 36355841 -191168737 + MER63A DNA MER1_type 39 209 -1 250 312 37 28 chr3 36356287 36356396 -191168182 + L2 LINE L2 3189 3298 -15 187 218 20 0 chr3 36357329 36357430 -191167148 + C-rich Low_complexity Low_complexity 2 104 0 342 67 0 0 chr3 36358003 36358048 -191166530 + (CA)n Simple_repeat Simple_repeat 2 46 0 2127 132 12 15 chr3 36358631 36358971 -191165607 - MER44D DNA MER2_type 0 609 1 614 245 7 7 chr3 36360406 36360561 -191164017 - MIR SINE MIR 0 262 108 314 313 71 46 chr3 36360572 36360771 -191163807 - MIR SINE MIR -31 231 29 579 259 78 10 chr3 36360864 36361057 -191163521 + Charlie8 DNA MER1_type 15 220 -2197 192 182 0 0 chr3 36361729 36361762 -191162816 - MIR SINE MIR -63 145 113 189 0 0 0 chr3 36364968 36364989 -191159589 + (TA)n Simple_repeat Simple_repeat 2 22 0 203 189 0 0 chr3 36365022 36365059 -191159519 + (TA)n Simple_repeat Simple_repeat 1 37 0 778 289 62 18 chr3 36365119 36365545 -191159033 - LTR16C LTR ERVL 0 491 1 21 0 0 0 chr3 36366649 36366670 -191157908 + AT_rich Low_complexity Low_complexity 1 21 0 249 362 115 6 chr3 36367806 36367980 -191156598 - L3 LINE CR1 -73 1504 1312 235 293 0 0 chr3 36367983 36368041 -191156537 - Charlie8 DNA MER1_type -1010 1407 1350 405 238 160 70 chr3 36368120 36368364 -191156214 - Charlie8 DNA MER1_type -2141 276 11 296 174 47 12 chr3 36368431 36368517 -191156061 + MLT2B3 LTR ERVL 5 93 -461 898 221 81 94 chr3 36368888 36369259 -191155319 + MLT2B3 LTR ERVL 83 448 -106 7855 164 76 20 chr3 36369265 36369660 -191154918 + MSTB-int LTR MaLR 1 372 -1279 2213 125 0 3 chr3 36369660 36369963 -191154615 + AluSx SINE Alu 3 304 -8 7855 164 76 20 chr3 36369963 36371130 -191153448 + MSTB-int LTR MaLR 372 1651 0 1158 146 11 100 chr3 36371130 36371411 -191153167 + MSTB LTR MaLR 1 256 -170 627 272 47 18 chr3 36371670 36371949 -191152629 + LTR33 LTR ERVL 3 258 -265 183 146 0 0 chr3 36373183 36373224 -191151354 + (T)n Simple_repeat Simple_repeat 1 41 0 3045 51 0 0 chr3 36373226 36373599 -191150979 - L1PA4 LINE L1 -3 6152 5780 1088 193 0 37 chr3 36373901 36374119 -191150459 + MER20 DNA MER1_type 9 218 -1 395 324 126 14 chr3 36375200 36375422 -191149156 - MLT1K LTR MaLR -19 569 323 490 302 22 22 chr3 36375865 36376004 -191148574 - MER5B DNA MER1_type -2 176 38 240 339 0 0 chr3 36376633 36376695 -191147883 + C-rich Low_complexity Low_complexity 1 62 0 1063 233 51 6 chr3 36376697 36377202 -191147376 - L1M4 LINE L1 -2467 3679 3119 1470 223 24 50 chr3 36377489 36378035 -191146543 - L1M4 LINE L1 -3068 3078 2547 1241 236 87 77 chr3 36378688 36379189 -191145389 - MLT1H LTR MaLR 0 549 45 211 333 0 0 chr3 36379440 36379509 -191145069 + GA-rich Low_complexity Low_complexity 4 72 0 427 252 129 43 chr3 36380211 36380350 -191144228 - L2 LINE L2 0 3272 3122 316 264 11 0 chr3 36381554 36381645 -191142933 - MLT1I LTR MaLR 0 409 318 719 246 0 31 chr3 36382277 36382468 -191142110 - MER20 DNA MER1_type 0 219 35 472 174 43 61 chr3 36382696 36382811 -191141767 - MIR3 SINE MIR -5 203 91 2171 123 0 19 chr3 36383430 36383746 -191140832 + AluSg SINE Alu 1 310 0 308 261 109 0 chr3 36383791 36383910 -191140668 - MER117 DNA MER1_type -36 161 30 195 42 0 0 chr3 36384032 36384056 -191140522 + (T)n Simple_repeat Simple_repeat 1 24 0 285 130 0 0 chr3 36384445 36384491 -191140087 - MLT2B1 LTR ERVL -8 512 467 308 102 11 34 chr3 36384506 36384594 -191139984 + (TA)n Simple_repeat Simple_repeat 2 87 0 1589 215 89 35 chr3 36384594 36385055 -191139523 - MLT2B1 LTR ERVL -34 486 1 23 0 0 0 chr3 36385647 36385670 -191138908 + GC_rich Low_complexity Low_complexity 1 23 0 292 172 20 40 chr3 36385688 36385787 -191138791 + C-rich Low_complexity Low_complexity 2 98 0 692 221 15 0 chr3 36386393 36386524 -191138054 + MER5A DNA MER1_type 1 133 -56 913 122 0 0 chr3 36386527 36386658 -191137920 - AluSc SINE Alu -4 305 175 325 206 32 0 chr3 36386658 36386721 -191137857 + MER5A DNA MER1_type 125 189 0 263 394 11 23 chr3 36387090 36387265 -191137313 + L2 LINE L2 270 442 -2872 21 36 0 0 chr3 36388210 36388238 -191136340 + AT_rich Low_complexity Low_complexity 1 28 0 350 281 105 6 chr3 36388499 36388670 -191135908 - L1MC/D LINE L1 -1999 5809 5622 305 98 78 0 chr3 36388852 36388903 -191135675 - MLT2A1 LTR ERVL 0 453 399 265 60 100 10 chr3 36388906 36389006 -191135572 + (TA)n Simple_repeat Simple_repeat 1 109 0 2548 89 2 68 chr3 36389007 36389433 -191135145 - MLT2A1 LTR ERVL -44 400 3 428 276 8 8 chr3 36389565 36389688 -191134890 - MIR SINE MIR -4 258 136 229 176 35 94 chr3 36389690 36389775 -191134803 - MER116 DNA Mariner 0 80 1 332 284 9 28 chr3 36389797 36389906 -191134672 - MIR SINE MIR -154 108 2 211 331 66 50 chr3 36390027 36390148 -191134430 + L2 LINE L2 3138 3260 -12 356 235 139 116 chr3 36391155 36391542 -191133036 - MLT1L LTR MaLR -4 611 216 1402 153 36 4 chr3 36392151 36392432 -191132146 - L1MA8 LINE L1 0 6291 6002 3568 122 22 52 chr3 36392573 36392783 -191131795 - L1MA8 LINE L1 -289 6002 5787 252 0 0 0 chr3 36392783 36392811 -191131767 + (TA)n Simple_repeat Simple_repeat 1 28 0 3568 122 22 52 chr3 36392811 36393278 -191131300 - L1MA8 LINE L1 -504 5787 5345 602 281 44 0 chr3 36393280 36393415 -191131163 - FRAM SINE Alu -30 146 6 1275 127 36 12 chr3 36393419 36393671 -191130907 - L1 LINE L1 -779 5367 5110 2366 147 3 3 chr3 36396602 36396977 -191127601 + THE1C LTR MaLR 1 375 0 2247 111 16 5 chr3 36396977 36397553 -191127025 + THE1C-int LTR MaLR 1 643 -937 665 226 44 0 chr3 36397639 36397798 -191126780 - MER3 DNA MER1_type -29 180 15 17722 146 8 7 chr3 36397867 36401254 -191123324 + L1PA11 LINE L1 2087 5477 -697 503 114 0 13 chr3 36401254 36401333 -191123245 - MADE1 DNA Mariner 0 80 3 17722 146 8 7 chr3 36401333 36402031 -191122547 + L1PA11 LINE L1 5477 6173 -1 594 323 25 0 chr3 36402031 36402232 -191122346 + MIR SINE MIR 47 252 -10 2017 149 83 13 chr3 36402253 36402649 -191121929 - MSTB1 LTR MaLR 0 432 9 292 260 50 10 chr3 36402791 36402891 -191121687 - MIR SINE MIR -5 257 154 500 267 105 17 chr3 36403057 36403229 -191121349 - MIR SINE MIR -56 206 20 21 71 0 0 chr3 36403271 36403313 -191121265 + AT_rich Low_complexity Low_complexity 1 42 0 242 317 35 45 chr3 36403327 36403529 -191121049 - L2 LINE L2 -227 3086 2887 572 233 17 57 chr3 36403551 36403727 -191120851 - MER97b DNA MER1_type? -880 173 5 364 284 69 78 chr3 36406145 36406363 -191118215 + MIR SINE MIR 44 259 -3 738 296 40 20 chr3 36407076 36407326 -191117252 - MIR SINE MIR 0 262 8 41 0 0 0 chr3 36407510 36407551 -191117027 + AT_rich Low_complexity Low_complexity 1 41 0 960 252 33 36 chr3 36407990 36408323 -191116255 + LTR16C LTR ERVL 153 484 -7 2400 88 3 0 chr3 36408554 36408861 -191115717 + AluY SINE Alu 1 308 -3 23 68 0 0 chr3 36409971 36410015 -191114563 + AT_rich Low_complexity Low_complexity 1 44 0 30 0 0 0 chr3 36410988 36411018 -191113560 + AT_rich Low_complexity Low_complexity 1 30 0 822 200 91 0 chr3 36411429 36411594 -191112984 + Tigger3(Golem) DNA MER2_type 2 181 -2848 * 4278 122 74 32 chr3 36411592 36411771 -191112807 + Tigger3(Golem) DNA MER2_type 2141 2311 -718 372 22 0 0 chr3 36411771 36411816 -191112762 + (TG)n Simple_repeat Simple_repeat 2 46 0 4278 122 74 32 chr3 36411816 36412488 -191112090 + Tigger3(Golem) DNA MER2_type 2311 3028 -1 194 320 0 39 chr3 36412729 36412807 -191111771 + L2 LINE L2 3234 3308 -5 300 257 0 14 chr3 36413397 36413467 -191111111 - L2 LINE L2 0 3272 3204 1836 144 16 35 chr3 36414096 36414408 -191110170 - AluJo SINE Alu -4 308 3 523 295 145 5 chr3 36416357 36416550 -191108028 - MIR SINE MIR -11 251 32 321 302 0 21 chr3 36416569 36416665 -191107913 + MER5B DNA MER1_type 79 172 -6 393 234 73 68 chr3 36419680 36419933 -191104645 - MLT1K LTR MaLR -6 609 328 181 291 9 100 chr3 36419998 36420108 -191104470 - MIR3 SINE MIR -27 181 82 2122 139 3 0 chr3 36420215 36420517 -191104061 + AluSx SINE Alu 1 303 -9 505 271 14 21 chr3 36420559 36420840 -191103738 + MST-int LTR MaLR 433 711 -940 2071 135 3 19 chr3 36422573 36422885 -191101693 - AluSx SINE Alu 0 312 6 764 295 123 50 chr3 36423199 36423708 -191100870 - L2 LINE L2 -8 3305 2761 1558 171 10 106 chr3 36423708 36424112 -191100466 - MLT1A1 LTR MaLR 0 365 1 764 295 123 50 chr3 36424112 36424154 -191100424 - L2 LINE L2 -552 2761 2723 2090 143 32 24 chr3 36424294 36424596 -191099982 + MSTC LTR MaLR 54 362 -66 2060 109 0 3 chr3 36424596 36424903 -191099675 + AluSq SINE Alu 1 306 0 2090 143 32 24 chr3 36424903 36424971 -191099607 + MSTC LTR MaLR 362 428 0 429 157 36 12 chr3 36425272 36425355 -191099223 - MER5A DNA MER1_type -2 187 103 575 279 59 36 chr3 36426331 36426550 -191098028 + MIR SINE MIR 10 233 -29 193 358 136 19 chr3 36428324 36428486 -191096092 + MIR SINE MIR 20 200 -62 228 67 0 0 chr3 36429102 36429132 -191095446 + (CAT)n Simple_repeat Simple_repeat 2 31 0 426 357 94 14 chr3 36429188 36429401 -191095177 - L2 LINE L2 -4 3268 3039 1004 185 57 64 chr3 36429493 36429807 -191094771 - MER33 DNA MER1_type 0 324 13 351 316 0 0 chr3 36429812 36429891 -191094687 - L2 LINE L2 -33 3239 3161 696 334 72 47 chr3 36429904 36430565 -191094013 - L2 LINE L2 -268 3004 2332 963 309 116 9 chr3 36430567 36431014 -191093564 - LTR33 LTR ERVL -26 495 1 1200 53 12 6 chr3 36431499 36431669 -191092909 + (TTTC)n Simple_repeat Simple_repeat 4 174 0 1148 103 6 0 chr3 36431688 36431862 -191092716 + (TTTC)n Simple_repeat Simple_repeat 3 177 0 194 324 41 90 chr3 36432999 36433144 -191091434 - L2 LINE L2 -182 3090 2953 572 196 69 123 chr3 36433239 36433605 -191090973 + MLT1H LTR MaLR 129 542 0 374 0 0 21 chr3 36433685 36433732 -191090846 + (TA)n Simple_repeat Simple_repeat 1 46 0 930 199 21 5 chr3 36434156 36434342 -191090236 - MER5A DNA MER1_type 0 189 1 1877 178 55 15 chr3 36434361 36434760 -191089818 + MLT2C2 LTR ERVL 1 415 -49 191 88 29 0 chr3 36434872 36434906 -191089672 + (GA)n Simple_repeat Simple_repeat 2 36 0 378 107 0 0 chr3 36434968 36435024 -191089554 + (A)n Simple_repeat Simple_repeat 1 56 0 203 364 50 16 chr3 36435031 36435152 -191089426 + L2 LINE L2 2934 3058 -214 242 250 0 16 chr3 36435560 36435624 -191088954 - L2 LINE L2 -1 3271 3209 961 255 137 29 chr3 36436316 36436696 -191087882 + LTR16C LTR ERVL 71 491 0 466 266 68 34 chr3 36437254 36437461 -191087117 + L2 LINE L2 2593 2806 -508 299 270 139 17 chr3 36437454 36437569 -191087009 + L2 LINE L2 3011 3139 -174 * 1381 228 111 8 chr3 36437622 36437991 -191086587 - L1ME1 LINE L1 -283 5883 5477 2068 171 50 16 chr3 36438122 36438606 -191085972 - L1MC2 LINE L1 -6 6338 5839 188 265 0 0 chr3 36438606 36438650 -191085928 - MER5B DNA MER1_type -128 50 7 433 223 39 85 chr3 36438657 36438787 -191085791 + L2 LINE L2 3190 3313 0 216 0 0 0 chr3 36439347 36439371 -191085207 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 266 270 90 0 chr3 36439456 36439556 -191085022 + MIR3 SINE MIR 99 207 -1 274 353 147 0 chr3 36439857 36439973 -191084605 + L2 LINE L2 3136 3268 -4 216 0 0 0 chr3 36440144 36440168 -191084410 + (T)n Simple_repeat Simple_repeat 1 24 0 254 275 145 22 chr3 36440243 36440381 -191084197 - MIR SINE MIR -29 233 79 261 338 103 0 chr3 36440521 36440657 -191083921 + MIR SINE MIR 112 261 -1 26 30 0 0 chr3 36441248 36441281 -191083297 + AT_rich Low_complexity Low_complexity 1 33 0 1659 286 59 29 chr3 36441283 36442334 -191082244 - L1ME3A LINE L1 -52 6118 5035 4089 156 37 32 chr3 36442334 36443115 -191081463 - LTR1 LTR ERV1 0 785 1 863 121 52 81 chr3 36443115 36443288 -191081290 - HUERS-P2 LTR ERV1 0 3088 2921 1162 130 5 5 chr3 36443462 36443654 -191080924 - Tigger1 DNA MER2_type -1186 1232 1041 8310 125 38 8 chr3 36444550 36445876 -191078702 - HUERS-P2 LTR ERV1 -249 2839 1474 3206 162 38 29 chr3 36445889 36446549 -191078029 - LTR1 LTR ERV1 -119 666 1 635 282 16 12 chr3 36446554 36446802 -191077776 - L1ME3A LINE L1 -1115 5031 4783 363 319 49 11 chr3 36446807 36447070 -191077508 - L1ME3A LINE L1 -1402 4744 4472 1032 280 73 62 chr3 36447218 36448322 -191076256 - L1ME3A LINE L1 -1744 4402 3286 702 210 114 54 chr3 36448438 36448789 -191075789 - L1ME3 LINE L1 -15 6541 6174 13259 148 22 11 chr3 36448789 36448984 -191075594 - Tigger1 DNA MER2_type -1 2417 2226 1705 126 19 4 chr3 36448984 36449255 -191075323 - L1PB1 LINE L1 -1 6150 5876 13259 148 22 11 chr3 36449255 36451146 -191073432 - Tigger1 DNA MER2_type -192 2226 301 237 65 0 0 chr3 36451146 36451177 -191073401 + (CA)n Simple_repeat Simple_repeat 2 32 0 13259 148 22 11 chr3 36451177 36451454 -191073124 - Tigger1 DNA MER2_type -2117 301 28 1184 261 46 41 chr3 36451489 36452591 -191071987 - L1ME3 LINE L1 -394 6162 5064 253 189 94 9 chr3 36452638 36452744 -191071834 - L1ME3 LINE L1 -4581 1959 1845 608 202 50 81 chr3 36453120 36453318 -191071260 + MLT1I LTR MaLR 217 408 -1 308 277 92 34 chr3 36453540 36453659 -191070919 - L2 LINE L2 -243 3029 2904 480 220 74 150 chr3 36453687 36454048 -191070530 + LTR16A1 LTR ERVL 1 317 -140 1034 175 46 136 chr3 36454048 36454483 -191070095 - MSTD LTR MaLR 0 396 1 480 220 74 150 chr3 36454483 36454607 -191069971 + LTR16A1 LTR ERVL 317 449 -8 259 293 30 0 chr3 36454655 36454754 -191069824 - MER103 DNA DNA -24 142 41 305 350 25 0 chr3 36454781 36454901 -191069677 + MIR SINE MIR 20 142 -120 1428 240 120 34 chr3 36454911 36455494 -191069084 + L1ME1 LINE L1 5530 6162 -4 224 246 217 0 chr3 36455613 36455682 -191068896 + MIR SINE MIR 153 236 -26 21 0 0 0 chr3 36455737 36455758 -191068820 + AT_rich Low_complexity Low_complexity 1 21 0 956 67 0 15 chr3 36455780 36455915 -191068663 - L1PA4 LINE L1 0 6155 6023 576 263 43 14 chr3 36457648 36457857 -191066721 - L1ME1 LINE L1 -7 6159 5945 368 244 67 88 chr3 36458524 36458717 -191065861 - MIR SINE MIR -2 260 72 363 106 0 0 chr3 36458901 36458967 -191065611 + (TG)n Simple_repeat Simple_repeat 2 67 0 288 130 0 0 chr3 36459470 36459516 -191065062 + (TCCC)n Simple_repeat Simple_repeat 3 48 0 264 59 0 0 chr3 36459518 36459552 -191065026 + (TG)n Simple_repeat Simple_repeat 1 34 0 242 351 18 18 chr3 36461092 36461203 -191063375 + MIR SINE MIR 30 140 -68 393 217 12 0 chr3 36461329 36461412 -191063166 + MER5A DNA MER1_type 26 109 -80 745 247 30 6 chr3 36461466 36461632 -191062946 + MER5A DNA MER1_type 2 171 -18 231 239 0 15 chr3 36461725 36461792 -191062786 + (TATAA)n Simple_repeat Simple_repeat 5 70 0 228 250 12 12 chr3 36461891 36461971 -191062607 - LTR67 LTR ERVL -20 537 458 210 239 36 29 chr3 36463547 36463690 -191060888 + (TTATA)n Simple_repeat Simple_repeat 1 141 -387 1581 134 78 34 chr3 36463690 36464010 -191060568 - MER44D DNA MER2_type -1 608 5 210 239 36 29 chr3 36464010 36464072 -191060506 + (TTATA)n Simple_repeat Simple_repeat 141 528 0 227 111 48 16 chr3 36464076 36464139 -191060439 + (TA)n Simple_repeat Simple_repeat 1 65 0 204 255 226 69 chr3 36467151 36467253 -191057325 - MIR3 SINE MIR -49 159 42 464 139 38 0 chr3 36467266 36467345 -191057233 + MLT1F LTR MaLR 1 82 -460 1516 186 23 39 chr3 36467537 36467844 -191056734 - AluJo SINE Alu -6 306 5 494 277 122 29 chr3 36468235 36469060 -191055518 - L1MCc LINE L1 -4697 2246 1279 268 288 9 36 chr3 36469889 36470000 -191054578 - MIR SINE MIR -33 229 122 753 294 87 4 chr3 36470126 36470357 -191054221 + MIR SINE MIR 11 260 -2 219 195 0 0 chr3 36470431 36470472 -191054106 + L2 LINE L2 3186 3226 -87 1474 237 30 40 chr3 36471198 36471663 -191052915 - MLT1C LTR MaLR -1 466 1 227 308 25 101 chr3 36471978 36472264 -191052314 - L2 LINE L2 -205 3067 2804 1061 202 0 5 chr3 36472371 36472574 -191052004 - MLT1A1 LTR MaLR -29 336 135 1596 225 22 22 chr3 36472574 36472939 -191051639 - MLT1A1 LTR MaLR 0 365 1 238 316 91 73 chr3 36472945 36473287 -191051291 - L2 LINE L2 -528 2786 2439 303 164 0 0 chr3 36474050 36474111 -191050467 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 2402 136 114 50 chr3 36474112 36474596 -191049982 - MLT2B3 LTR ERVL -39 515 1 227 272 54 88 chr3 36475070 36475217 -191049361 + MIR SINE MIR 120 261 -1 266 194 32 16 chr3 36476200 36476262 -191048316 + MIR SINE MIR 93 155 -107 1121 216 75 48 chr3 36476390 36476829 -191047749 - LTR37B LTR ERV1 -3 465 15 1603 164 27 27 chr3 36476845 36477137 -191047441 - AluJb SINE Alu -19 293 2 21 36 0 0 chr3 36479494 36479522 -191045056 + AT_rich Low_complexity Low_complexity 1 28 0 287 336 109 0 chr3 36479628 36479857 -191044721 - L1ME LINE L1 -351 5819 5566 422 263 78 37 chr3 36479862 36480079 -191044499 - L1ME LINE L1 -861 5285 5060 263 247 130 0 chr3 36480567 36480644 -191043934 - L2 LINE L2 0 3313 3227 650 348 166 28 chr3 36480665 36481403 -191043175 - L2 LINE L2 -248 3065 2223 9728 138 9 1 chr3 36481715 36484095 -191040483 + L1PA12 LINE L1 3656 6046 -122 422 241 45 33 chr3 36484286 36484531 -191040047 + L1PA12 LINE L1 5921 6168 0 231 375 53 46 chr3 36485025 36485177 -191039401 - L2 LINE L2 -22 3250 3098 185 108 27 0 chr3 36485276 36485313 -191039265 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 619 251 117 14 chr3 36485619 36485842 -191038736 - MLT1J2 LTR MaLR -204 246 1 449 246 27 18 chr3 36485944 36486054 -191038524 - MIR SINE MIR -149 113 3 322 292 144 35 chr3 36486138 36486340 -191038238 - L1ME LINE L1 -451 5670 5447 358 196 22 0 chr3 36486671 36486763 -191037815 + (CATATA)n Simple_repeat Simple_repeat 2 95 0 931 184 56 0 chr3 36487179 36487358 -191037220 - MER5A DNA MER1_type 0 189 1 1134 229 5 0 chr3 36489014 36489232 -191035346 - MER20 DNA MER1_type 0 219 1 183 222 56 0 chr3 36490820 36490874 -191033704 - MIR3 SINE MIR -1 207 151 574 245 38 33 chr3 36491004 36491188 -191033390 - MER63A DNA MER1_type -25 185 1 183 225 88 50 chr3 36491301 36491381 -191033197 - L2 LINE L2 -327 2945 2863 246 171 72 90 chr3 36493039 36493150 -191031428 + MER103 DNA DNA 12 120 -46 860 215 92 0 chr3 36493222 36493417 -191031161 + MER58A DNA MER1_type 12 224 0 645 249 107 29 chr3 36494080 36494543 -191030035 - MLT1F1 LTR MaLR -3 564 1 384 240 42 0 chr3 36494681 36494777 -191029801 - MER91B DNA MER1_type -1 189 90 325 235 78 41 chr3 36494794 36494914 -191029664 - MER91B DNA MER1_type -60 130 1 230 323 15 0 chr3 36495110 36495175 -191029403 + L2 LINE L2 3142 3207 -65 227 283 25 67 chr3 36495232 36495352 -191029226 - L2 LINE L2 -95 3218 3104 262 377 23 0 chr3 36495900 36496030 -191028548 + L3b LINE CR1 1104 1236 -347 184 256 141 26 chr3 36497809 36497887 -191026691 - L2 LINE L2 -20 3252 3166 424 284 148 12 chr3 36498330 36498492 -191026086 - MER5A DNA MER1_type -5 184 1 200 316 51 31 chr3 36499567 36499665 -191024913 - MIR3 SINE MIR 0 208 109 266 368 11 0 chr3 36500098 36500185 -191024393 + L2 LINE L2 2881 2968 -304 371 314 68 27 chr3 36500362 36500582 -191023996 - MLT1L LTR MaLR -192 423 195 1860 130 0 0 chr3 36500878 36501139 -191023439 - AluY SINE Alu -16 295 35 475 338 45 40 chr3 36501143 36501236 -191023342 - MIR SINE MIR -21 241 150 1713 147 29 33 chr3 36501236 36501361 -191023217 + AluSc SINE Alu 1 125 -184 207 0 0 0 chr3 36501361 36501384 -191023194 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1713 147 29 33 chr3 36501384 36501564 -191023014 + AluSc SINE Alu 125 305 -4 475 338 45 40 chr3 36501564 36501692 -191022886 - MIR SINE MIR -112 150 19 1194 52 35 0 chr3 36501991 36502163 -191022415 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 384 250 19 10 chr3 36502163 36502267 -191022311 + CT-rich Low_complexity Low_complexity 2 106 0 1208 261 4 4 chr3 36502399 36502671 -191021907 + MLT1E LTR MaLR 314 585 -8 256 248 99 75 chr3 36502962 36503123 -191021455 + LTR33A LTR ERVL 21 185 -338 439 238 184 12 chr3 36503208 36503376 -191021202 - MER3 DNA MER1_type -12 197 1 379 250 105 7 chr3 36503390 36503542 -191021036 + LTR33A LTR ERVL 294 460 -63 1262 206 67 75 chr3 36503637 36503743 -191020835 - MLT1F1 LTR MaLR 0 567 462 2195 113 0 0 chr3 36503743 36504027 -191020551 + AluSx SINE Alu 1 284 -28 1262 206 67 75 chr3 36504027 36504047 -191020531 - MLT1F1 LTR MaLR -105 462 443 378 0 0 0 chr3 36504047 36504089 -191020489 + (CAT)n Simple_repeat Simple_repeat 2 43 0 1262 206 67 75 chr3 36504089 36504350 -191020228 - MLT1F1 LTR MaLR -124 443 182 416 338 26 7 chr3 36504423 36504577 -191020001 - MLT1F1 LTR MaLR -383 159 3 21 36 0 0 chr3 36505579 36505607 -191018971 + AT_rich Low_complexity Low_complexity 1 28 0 216 299 0 26 chr3 36506056 36506133 -191018445 + CT-rich Low_complexity Low_complexity 4 78 0 247 339 62 9 chr3 36506474 36506586 -191017992 + L2 LINE L2 3150 3267 -5 3338 195 56 19 chr3 36506773 36507377 -191017201 + L1MA9 LINE L1 4428 5077 -1069 2824 13 0 0 chr3 36507377 36507687 -191016891 - AluYb8 SINE Alu -8 310 1 3338 195 56 19 chr3 36507687 36507973 -191016605 + L1MA9 LINE L1 5077 5351 -795 1334 115 86 0 chr3 36508267 36508476 -191016102 - MER30 DNA MER1_type 0 230 4 3422 191 85 16 chr3 36508588 36509461 -191015117 + L1MA9 LINE L1 5349 6281 -31 2063 103 4 11 chr3 36509480 36509785 -191014793 - AluSc SINE Alu 0 303 1 773 238 52 40 chr3 36511274 36511362 -191013216 + MIR SINE MIR 3 88 -174 1745 169 13 10 chr3 36511362 36511664 -191012914 - AluJb SINE Alu -7 305 3 773 238 52 40 chr3 36511664 36511823 -191012755 + MIR SINE MIR 88 253 -9 2115 120 0 3 chr3 36511851 36512181 -191012397 - AluSq SINE Alu 0 329 1 1148 227 40 0 chr3 36512214 36512487 -191012091 - LTR16A1 LTR ERVL -5 452 169 440 161 137 16 chr3 36513722 36513846 -191010732 + L1MA9 LINE L1 5126 5264 -882 1214 181 69 20 chr3 36513846 36513925 -191010653 + L1MA9 LINE L1 5698 5772 -540 468 0 0 0 chr3 36513925 36513977 -191010601 + (CA)n Simple_repeat Simple_repeat 2 53 0 1214 181 69 20 chr3 36513977 36514200 -191010378 + L1MA9 LINE L1 5772 6015 -297 5815 193 65 27 chr3 36514345 36515893 -191008685 - L1MC3 LINE L1 -1 7784 6179 375 226 97 45 chr3 36516074 36516229 -191008349 + MIR SINE MIR 53 215 -47 411 21 0 0 chr3 36516951 36516999 -191007579 + (CA)n Simple_repeat Simple_repeat 1 48 0 191 229 16 82 chr3 36517187 36517248 -191007330 + MIR3 SINE MIR 113 169 -39 347 217 50 25 chr3 36518349 36518469 -191006109 + MER103 DNA DNA 27 149 -17 561 286 127 29 chr3 36518520 36518962 -191005616 - MLT1G1 LTR MaLR -8 559 87 452 259 9 0 chr3 36519122 36519234 -191005344 - MER97c DNA MER1_type? -908 182 70 852 131 74 6 chr3 36519236 36519411 -191005167 - MER53 DNA DNA 0 189 3 467 362 63 5 chr3 36519527 36519734 -191004844 + MIR SINE MIR 20 238 -24 249 354 7 14 chr3 36520281 36520425 -191004153 + C-rich Low_complexity Low_complexity 2 144 0 609 171 0 0 chr3 36520577 36520694 -191003884 + CT-rich Low_complexity Low_complexity 2 118 0 21 0 0 0 chr3 36521486 36521507 -191003071 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 36522331 36522359 -191002219 + AT_rich Low_complexity Low_complexity 1 28 0 509 277 189 6 chr3 36522787 36523123 -191001455 + LTR33A LTR ERVL 67 504 -19 2496 138 33 24 chr3 36523708 36524165 -191000413 - L1MA4 LINE L1 0 6300 5840 460 224 219 0 chr3 36524356 36524521 -191000057 - MIR SINE MIR -1 261 67 13970 158 24 36 chr3 36526180 36527190 -190997388 - L1 LINE L1 -1886 5679 4658 204 40 0 0 chr3 36527190 36527215 -190997363 + (TC)n Simple_repeat Simple_repeat 1 25 0 2037 122 0 0 chr3 36527215 36527493 -190997085 - AluSx SINE Alu -32 280 3 13970 158 24 36 chr3 36527493 36530459 -190994119 - L1 LINE L1 -2906 4659 1760 225 0 0 0 chr3 36530459 36530484 -190994094 + (TC)n Simple_repeat Simple_repeat 2 26 0 13970 158 24 36 chr3 36530484 36530921 -190993657 - L1 LINE L1 -5805 1760 1319 711 265 89 124 chr3 36531175 36531612 -190992966 + MLT1G LTR MaLR 15 436 -106 231 114 0 0 chr3 36531617 36531652 -190992926 + MLT1G LTR MaLR 556 590 0 488 268 73 92 chr3 36532028 36532342 -190992236 + MLT1I LTR MaLR 79 386 -23 232 239 15 15 chr3 36532695 36532762 -190991816 - L1MC5 LINE L1 -78 7883 7817 527 264 8 0 chr3 36532978 36533107 -190991471 - MER94 DNA DNA -1 133 4 697 251 29 11 chr3 36533285 36533460 -190991118 - MER45A DNA AcHobo 0 178 1 211 329 25 13 chr3 36533647 36533726 -190990852 - MIR SINE MIR -181 81 2 569 246 99 37 chr3 36534562 36534753 -190989825 + MIR SINE MIR 12 214 -48 249 378 0 0 chr3 36535678 36535752 -190988826 + ORSL DNA AcHobo 202 275 0 1078 188 28 86 chr3 36535910 36536234 -190988344 - MER46C DNA MER2_type -32 306 2 280 333 19 19 chr3 36536298 36536406 -190988172 - MIR SINE MIR -108 154 47 192 40 0 0 chr3 36537228 36537253 -190987325 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 607 229 33 19 chr3 36537704 36537954 -190986624 + L1M2 LINE L1 5200 5446 -705 849 266 65 80 chr3 36537963 36538513 -190986065 - MER34 LTR ERV1 0 542 1 1313 275 65 70 chr3 36538520 36539207 -190985371 + L1ME3A LINE L1 5459 6142 -28 1201 199 42 10 chr3 36540047 36540353 -190984225 - LTR37A LTR ERV1 0 426 111 1846 123 43 14 chr3 36540938 36541214 -190983364 + AluSg SINE Alu 3 286 -24 200 304 0 0 chr3 36541775 36541831 -190982747 + CT-rich Low_complexity Low_complexity 3 58 0 8945 73 13 2 chr3 36543758 36545737 -190978841 - L1PA7 LINE L1 -20 6134 4138 2303 110 0 0 chr3 36546424 36546723 -190977855 - AluSc SINE Alu -10 299 1 598 245 40 20 chr3 36546726 36546877 -190977701 - MIR SINE MIR -104 158 5 2146 110 0 10 chr3 36547602 36547902 -190976676 + AluSc SINE Alu 1 297 -12 265 304 76 0 chr3 36549059 36549151 -190975427 - MIR SINE MIR -70 192 94 664 287 12 18 chr3 36549204 36549368 -190975210 - MER5A DNA MER1_type 0 189 27 1270 235 6 42 chr3 36550232 36550585 -190973993 + MER58B DNA MER1_type 2 341 0 315 203 0 0 chr3 36551279 36551353 -190973225 - L1MB7 LINE L1 -3 6181 6108 414 181 29 0 chr3 36551357 36551462 -190973116 + (TA)n Simple_repeat Simple_repeat 2 109 0 4384 230 82 29 chr3 36551463 36552073 -190972505 - L1MB7 LINE L1 -93 6091 5515 2526 166 22 0 chr3 36552073 36552490 -190972088 - MSTB LTR MaLR 0 426 1 4384 230 82 29 chr3 36552490 36552744 -190971834 - L1MB7 LINE L1 -669 5515 5276 2402 63 3 0 chr3 36552744 36553031 -190971547 - AluY SINE Alu -23 288 1 4384 230 82 29 chr3 36553031 36554605 -190969973 - L1MB7 LINE L1 -908 5276 3526 253 357 54 38 chr3 36554666 36554851 -190969727 - LTR16C LTR ERVL -196 295 108 350 290 11 0 chr3 36554966 36555059 -190969519 - Tigger7 DNA MER2_type -4 2483 2390 * 1055 233 20 0 chr3 36555057 36555259 -190969319 - Tigger7 DNA MER2_type -466 267 62 1359 323 67 49 chr3 36556086 36557412 -190967166 - ERVL LTR ERVL -898 4597 3155 3670 96 146 131 chr3 36557413 36558839 -190965739 - pTR5 LTR ERV1 0 2606 1524 857 302 42 29 chr3 36558813 36559124 -190965454 - ERVL LTR ERVL -2474 3180 2866 * 490 368 38 17 chr3 36559111 36559402 -190965176 - ERVL LTR ERVL -4078 1686 1390 * 1746 183 51 0 chr3 36559498 36559832 -190964746 - MLT1A1 LTR MaLR -14 351 1 402 305 23 8 chr3 36560188 36560346 -190964232 + MLT1J2 LTR MaLR 1 160 -249 907 200 71 78 chr3 36560355 36560650 -190963928 - MLT1B LTR MaLR 0 390 98 304 227 144 10 chr3 36561269 36561366 -190963212 + MLT1I LTR MaLR 299 408 -1 3458 152 95 19 chr3 36561705 36562376 -190962202 + MER72 LTR ERV1 1 722 0 21 36 0 0 chr3 36562509 36562537 -190962041 + AT_rich Low_complexity Low_complexity 1 28 0 457 320 44 19 chr3 36563492 36563698 -190960880 + MIR SINE MIR 15 225 -37 2058 132 139 13 chr3 36563790 36564170 -190960408 + MSTA LTR MaLR 1 428 0 376 329 22 15 chr3 36564204 36564341 -190960237 - MIR SINE MIR -123 139 2 2434 75 0 31 chr3 36564700 36565021 -190959557 - AluY SINE Alu 0 311 1 194 329 92 0 chr3 36565213 36565289 -190959289 + MIR3 SINE MIR 5 87 -121 228 35 0 0 chr3 36565517 36565546 -190959032 + (TG)n Simple_repeat Simple_repeat 1 29 0 351 320 0 8 chr3 36565727 36565849 -190958729 - LTR67 LTR ERVL -19 538 418 2340 101 0 0 chr3 36566019 36566316 -190958262 - AluSx SINE Alu -15 297 1 183 186 0 0 chr3 36566777 36566820 -190957758 + T-rich Low_complexity Low_complexity 1 43 0 2929 173 26 9 chr3 36567611 36568149 -190956429 + MER44D DNA MER2_type 1 602 -3 29 78 0 0 chr3 36568236 36568300 -190956278 + AT_rich Low_complexity Low_complexity 1 64 0 1010 346 177 19 chr3 36568750 36569949 -190954629 + L3 LINE CR1 189 1576 -1 245 333 124 7 chr3 36570404 36570557 -190954021 - MIR SINE MIR -11 251 81 203 175 0 0 chr3 36570726 36570766 -190953812 + A-rich Low_complexity Low_complexity 1 40 0 313 259 108 57 chr3 36572542 36572700 -190951878 - MIR SINE MIR -59 203 38 438 283 107 83 chr3 36575101 36575391 -190949187 - L2 LINE L2 0 3272 2976 247 250 39 86 chr3 36577003 36577131 -190947447 - MLT1J LTR MaLR -66 445 324 256 263 105 17 chr3 36577484 36577688 -190946890 - L1P5 LINE L1 -643 5508 5283 1246 197 12 37 chr3 36578147 36578391 -190946187 + MER8 DNA MER2_type 2 239 0 782 287 69 23 chr3 36578799 36579060 -190945518 + MER54A LTR ERVL 303 575 -326 26 30 0 0 chr3 36580412 36580445 -190944133 + AT_rich Low_complexity Low_complexity 1 33 0 396 0 0 0 chr3 36580834 36580878 -190943700 + (TG)n Simple_repeat Simple_repeat 2 45 0 21 0 0 0 chr3 36580928 36580949 -190943629 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr3 36581219 36581258 -190943320 + AT_rich Low_complexity Low_complexity 1 39 0 32 86 0 0 chr3 36582482 36582563 -190942015 + AT_rich Low_complexity Low_complexity 1 81 0 266 295 107 54 chr3 36582924 36583036 -190941542 - L2 LINE L2 -8 3305 3188 185 178 22 0 chr3 36583739 36583784 -190940794 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 216 0 0 0 chr3 36584149 36584173 -190940405 + (T)n Simple_repeat Simple_repeat 1 24 0 322 211 23 113 chr3 36586461 36586524 -190938054 - Charlie8 DNA MER1_type -185 145 99 1812 163 0 3 chr3 36586524 36586813 -190937765 + AluJb SINE Alu 1 288 -24 322 211 23 113 chr3 36586813 36586882 -190937696 - Charlie8 DNA MER1_type -231 99 25 460 239 2 42 chr3 36587306 36587426 -190937152 + MLT1E LTR MaLR 57 170 -397 202 271 34 17 chr3 36637488 36637547 -190887031 - MIR SINE MIR -91 171 112 497 338 54 13 chr3 36637589 36637903 -190886675 + L2 LINE L2 1856 2182 -1132 351 0 0 0 chr3 36637925 36637964 -190886614 + (TTTA)n Simple_repeat Simple_repeat 3 41 0 1177 216 157 44 chr3 36637964 36638372 -190886206 - MER39 LTR ERV1 -31 676 223 229 309 41 10 chr3 36638365 36638462 -190886116 - LTR48B LTR ERV1 -541 103 4 * 245 346 58 32 chr3 36638741 36638897 -190885681 - MIR3 SINE MIR -31 177 18 505 304 20 20 chr3 36639643 36639791 -190884787 - MIR3 SINE MIR 0 208 61 592 236 22 33 chr3 36640742 36640924 -190883654 - L1M4 LINE L1 -2272 3874 3695 3824 104 35 199 chr3 36640930 36641929 -190882649 + Tigger1 DNA MER2_type 388 1222 -1196 781 195 154 5 chr3 36641961 36642156 -190882422 + Tigger1 DNA MER2_type 2185 2408 -10 330 280 60 0 chr3 36642247 36642347 -190882231 - MIR SINE MIR -38 224 119 242 353 44 19 chr3 36643569 36643741 -190880837 + MIR SINE MIR 35 206 -56 2288 168 32 43 chr3 36644323 36644830 -190879748 - L1MB7 LINE L1 -14 6406 5906 4053 180 43 23 chr3 36644836 36645741 -190878837 - L1MC2 LINE L1 -8 6336 5414 5009 137 72 87 chr3 36645744 36646876 -190877702 + MER52C LTR ERV1 31 1146 -132 254 173 0 27 chr3 36646876 36646951 -190877627 - L1MC2 LINE L1 -2642 5353 5281 * 760 229 3 0 chr3 36646934 36647104 -190877474 - L1MB7 LINE L1 -513 5907 5758 * 1382 42 31 0 chr3 36647101 36647294 -190877284 - L1PA4 LINE L1 -2819 3327 3129 17333 27 7 1 chr3 36647294 36650127 -190874451 + L1PA4 LINE L1 3317 6154 -1 504 225 0 0 chr3 36650138 36650259 -190874319 - L1MB7 LINE L1 -644 5775 5655 * 855 267 54 40 chr3 36650255 36650678 -190873900 - L1MB7 LINE L1 -3922 2462 2034 1179 168 44 134 chr3 36650679 36651066 -190873512 - MLT1A1 LTR MaLR -10 355 4 2093 215 45 39 chr3 36651112 36651201 -190873377 - L1MB7 LINE L1 -4497 1887 1800 2583 44 0 28 chr3 36651201 36651521 -190873057 - AluY SINE Alu 0 311 1 2093 215 45 39 chr3 36651521 36652053 -190872525 - L1MB7 LINE L1 -4584 1800 1262 * 11472 195 37 21 chr3 36652029 36652414 -190872164 - L1MA4A LINE L1 -274 6265 5888 1927 180 71 17 chr3 36652414 36652820 -190871758 + MSTA LTR MaLR 1 428 0 11472 195 37 21 chr3 36652820 36654307 -190870271 - L1MA4A LINE L1 -651 5888 4427 186 43 0 0 chr3 36654307 36654330 -190870248 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 11472 195 37 21 chr3 36654330 36655934 -190868644 - L1MA4A LINE L1 -2112 4427 2720 10030 243 53 49 chr3 36655936 36658825 -190865753 - L1MA4A LINE L1 -3945 2904 6 379 303 43 25 chr3 36660272 36660434 -190864144 - MLT1J2 LTR MaLR 0 450 286 299 284 59 10 chr3 36660531 36660633 -190863945 - MLT1J2 LTR MaLR -302 148 42 322 214 92 10 chr3 36661033 36661131 -190863447 + MIR3 SINE MIR 102 207 -1 311 306 33 25 chr3 36661629 36661750 -190862828 + MIR SINE MIR 32 153 -109 2497 67 0 3 chr3 36661766 36662078 -190862500 - AluY SINE Alu 0 311 1 315 71 0 0 chr3 36663136 36663178 -190861400 + (TTTTC)n Simple_repeat Simple_repeat 3 44 0 362 285 6 44 chr3 36663354 36663512 -190861066 + CT-rich Low_complexity Low_complexity 1 152 0 1240 214 133 41 chr3 36663653 36664065 -190860513 - MLT1C LTR MaLR 0 467 18 602 236 129 0 chr3 36666487 36666641 -190857937 + MER5A DNA MER1_type 4 180 -9 754 226 162 4 chr3 36667843 36668078 -190856500 - MLT1L LTR MaLR -2 613 342 533 250 169 7 chr3 36668433 36668581 -190855997 - MER5A DNA MER1_type -9 180 9 1753 187 7 3 chr3 36668893 36669192 -190855386 + AluSx SINE Alu 1 300 -12 437 203 77 4 chr3 36669703 36669827 -190854751 + MER3 DNA MER1_type 1 140 -69 23 68 0 0 chr3 36670052 36670096 -190854482 + AT_rich Low_complexity Low_complexity 1 44 0 220 143 24 0 chr3 36670758 36670800 -190853778 + (TA)n Simple_repeat Simple_repeat 2 44 0 318 277 34 42 chr3 36670800 36671038 -190853540 + L1ME LINE L1 5544 5779 -342 2268 98 0 3 chr3 36671325 36671648 -190852930 - AluSq SINE Alu 0 322 1 235 262 162 24 chr3 36671997 36672204 -190852374 - MLT1J LTR MaLR -72 543 232 21 36 0 0 chr3 36672581 36672609 -190851969 + AT_rich Low_complexity Low_complexity 1 28 0 1122 262 85 29 chr3 36672710 36673088 -190851490 - LTR16C LTR ERVL -22 469 71 476 329 33 7 chr3 36673227 36673379 -190851199 - MIR SINE MIR -101 161 6 482 194 10 41 chr3 36674353 36674451 -190850127 - MER63A DNA MER1_type -6 204 110 590 285 54 31 chr3 36674451 36674711 -190849867 - L1ME3 LINE L1 -83 6079 5814 732 123 31 223 chr3 36674721 36675013 -190849565 + MER33 DNA MER1_type 2 237 -87 1519 211 67 13 chr3 36675014 36675402 -190849176 - MLT1C LTR MaLR 0 467 59 461 187 33 0 chr3 36675454 36675545 -190849033 + MER33 DNA MER1_type 231 324 0 2189 124 0 0 chr3 36675716 36676014 -190848564 + AluSx SINE Alu 1 298 -14 229 266 71 0 chr3 36676045 36676158 -190848420 - L1MEc LINE L1 -5267 1129 1009 2086 143 0 6 chr3 36677956 36678270 -190846308 - AluSx SINE Alu 0 312 1 1708 263 57 11 chr3 36678500 36679044 -190845534 - L1ME2 LINE L1 -9 6950 6382 1001 257 84 60 chr3 36679071 36679450 -190845128 - L1ME2 LINE L1 -3925 3197 2828 858 267 32 5 chr3 36679450 36679667 -190844911 + MER58A DNA MER1_type 2 224 0 1001 257 84 60 chr3 36679667 36679847 -190844731 - L1ME2 LINE L1 -4294 2828 2621 1801 150 10 38 chr3 36679847 36680160 -190844418 - AluSx SINE Alu -8 304 1 1001 257 84 60 chr3 36680160 36680195 -190844383 - L1ME2 LINE L1 -4501 2621 2588 1454 251 53 55 chr3 36680233 36680382 -190844196 - L1ME2 LINE L1 -4690 2432 2284 2208 104 7 3 chr3 36680382 36680689 -190843889 + AluSq SINE Alu 1 308 -5 1454 251 53 55 chr3 36680689 36681307 -190843271 - L1ME2 LINE L1 -4838 2284 1666 627 306 17 13 chr3 36681349 36681581 -190842997 - L1ME2 LINE L1 -4968 1455 1223 245 282 68 19 chr3 36682049 36682152 -190842426 - L1ME2 LINE L1 -5294 1129 1022 483 238 90 63 chr3 36682155 36682344 -190842234 - L1ME2 LINE L1 -5981 442 249 3504 214 27 9 chr3 36682357 36683198 -190841380 - L1P LINE L1 -921 5225 4370 * 5176 135 15 4 chr3 36683196 36684019 -190840559 + L1PA16 LINE L1 5327 6158 -8 7275 42 1 0 chr3 36684079 36684971 -190839607 - L1PA5 LINE L1 -1376 4770 3878 7168 46 10 1 chr3 36684971 36686357 -190838221 + L1PA5 LINE L1 4761 6154 0 324 251 47 93 chr3 36686365 36686580 -190837998 - L1ME2 LINE L1 -6200 223 19 3924 170 41 10 chr3 36687733 36688516 -190836062 - L1PA16 LINE L1 0 6166 5360 23 0 0 0 chr3 36689150 36689173 -190835405 + AT_rich Low_complexity Low_complexity 1 23 0 390 203 0 0 chr3 36689205 36689274 -190835304 + MER5A DNA MER1_type 1 69 -120 380 316 8 8 chr3 36689274 36689304 -190835274 - L1MA10 LINE L1 -27 6307 6278 503 296 28 33 chr3 36689304 36689517 -190835061 - L1ME1 LINE L1 -47 6119 5908 2411 176 26 36 chr3 36689523 36690057 -190834521 - L1MC2 LINE L1 0 6344 5816 21 0 0 0 chr3 36690057 36690078 -190834500 + AT_rich Low_complexity Low_complexity 1 21 0 648 213 8 0 chr3 36690078 36690200 -190834378 - FLAM_C SINE Alu -18 125 3 2810 186 51 3 chr3 36690202 36690816 -190833762 - L1MC2 LINE L1 -519 5825 5185 1636 230 29 36 chr3 36690822 36691028 -190833550 - L1ME1 LINE L1 -272 5894 5688 1570 204 3 7 chr3 36691028 36691322 -190833256 - AluJb SINE Alu -18 294 2 1636 230 29 36 chr3 36691322 36691562 -190833016 - L1ME1 LINE L1 -478 5688 5451 267 200 63 42 chr3 36691560 36691655 -190832923 - L1ME1 LINE L1 -1364 4782 4686 * 698 277 94 0 chr3 36691737 36691950 -190832628 + Charlie1 DNA MER1_type 6 238 -2523 497 238 8 8 chr3 36691937 36692059 -190832519 + Charlie1 DNA MER1_type 2623 2744 -17 * 2822 169 9 30 chr3 36693581 36694497 -190830081 + L1P4 LINE L1 4876 5768 -395 207 0 0 0 chr3 36694499 36694522 -190830056 + (TA)n Simple_repeat Simple_repeat 1 23 0 1615 143 0 4 chr3 36694690 36694962 -190829616 - AluY SINE Alu -40 271 1 2997 150 3 22 chr3 36695801 36696468 -190828110 + L1PA16 LINE L1 5135 5768 -398 459 194 0 0 chr3 36696471 36696564 -190828014 + (TA)n Simple_repeat Simple_repeat 2 94 0 2364 118 10 15 chr3 36696564 36696773 -190827805 + L1PA16 LINE L1 5776 5984 -182 1801 149 49 35 chr3 36696773 36697143 -190827435 - THE1C LTR MaLR 0 375 1 2364 118 10 15 chr3 36697143 36697323 -190827255 + L1PA16 LINE L1 5984 6163 -3 32 57 0 0 chr3 36697737 36697790 -190826788 + AT_rich Low_complexity Low_complexity 1 53 0 691 194 4 15 chr3 36697984 36698224 -190826354 + AluJb SINE Alu 3 298 -14 414 0 0 0 chr3 36698406 36698452 -190826126 + (TG)n Simple_repeat Simple_repeat 1 46 0 2304 85 0 3 chr3 36698895 36699200 -190825378 + AluY SINE Alu 1 304 -7 562 299 26 0 chr3 36699658 36699812 -190824766 - MER63A DNA MER1_type 0 210 53 468 246 120 42 chr3 36700168 36700335 -190824243 - MER5A DNA MER1_type 0 189 10 231 114 0 0 chr3 36700497 36700532 -190824046 + (T)n Simple_repeat Simple_repeat 1 35 0 265 265 29 0 chr3 36701891 36701959 -190822619 + GA-rich Low_complexity Low_complexity 3 72 0 2898 6 0 0 chr3 36703293 36703610 -190820968 + AluYb8 SINE Alu 1 317 -1 391 147 29 0 chr3 36703642 36703710 -190820868 - L1MC3 LINE L1 -19 7766 7697 710 172 18 61 chr3 36703725 36703888 -190820690 - L1MC3 LINE L1 -278 7507 7352 636 210 19 6 chr3 36703888 36704045 -190820533 + L1MD1 LINE L1 6083 6241 -1 185 0 40 0 chr3 36704899 36704924 -190819654 + (TTTTC)n Simple_repeat Simple_repeat 5 30 0 1119 234 9 0 chr3 36706292 36706514 -190818064 - MER58A DNA MER1_type 0 224 1 1999 152 63 78 chr3 36707868 36708342 -190816236 + MLT1C LTR MaLR 1 467 0 22 0 0 0 chr3 36709323 36709345 -190815233 + AT_rich Low_complexity Low_complexity 1 22 0 236 322 68 75 chr3 36709621 36709913 -190814665 + L1MEd LINE L1 513 802 -5317 249 327 38 6 chr3 36710076 36710235 -190814343 + L1MEd LINE L1 904 1067 -5052 473 320 8 0 chr3 36710423 36710682 -190813896 + L1MEd LINE L1 2587 2847 -3282 770 286 116 45 chr3 36710887 36711481 -190813097 - HAL1 LINE L1 -621 1886 1251 337 341 118 4 chr3 36711567 36711796 -190812782 + MIR SINE MIR 8 262 0 341 332 153 26 chr3 36711811 36712124 -190812454 - HAL1 LINE L1 -1365 1142 790 21 0 0 0 chr3 36712443 36712464 -190812114 + AT_rich Low_complexity Low_complexity 1 21 0 559 227 86 73 chr3 36712554 36712681 -190811897 + MER58A DNA MER1_type 2 135 -2285 1709 133 53 30 chr3 36712681 36712982 -190811596 + AluSg1 SINE Alu 2 309 0 559 227 86 73 chr3 36712982 36713074 -190811504 + MER58A DNA MER1_type 135 224 0 25 51 0 0 chr3 36713158 36713197 -190811381 + AT_rich Low_complexity Low_complexity 1 39 0 3939 161 38 13 chr3 36713290 36714667 -190809911 + L1MB3 LINE L1 18 1602 -4782 * 4458 203 26 8 chr3 36714655 36715681 -190808897 + L1MB3 LINE L1 5354 6416 -3 3877 234 65 18 chr3 36715683 36716784 -190807794 + L1MD2 LINE L1 5186 6340 -19 219 88 0 0 chr3 36716916 36716950 -190807628 + (TC)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr3 36717845 36717869 -190806709 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr3 36719437 36719473 -190805105 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr3 36719568 36719596 -190804982 + AT_rich Low_complexity Low_complexity 1 28 0 504 0 0 0 chr3 36719680 36719736 -190804842 + (TG)n Simple_repeat Simple_repeat 2 57 0 1423 24 0 0 chr3 36720126 36720330 -190804248 + L1PA4 LINE L1 5972 6175 0 180 0 0 0 chr3 36720368 36720388 -190804190 + (TAA)n Simple_repeat Simple_repeat 2 21 0 675 232 11 50 chr3 36720513 36720694 -190803884 - MER69A DNA AcHobo 0 177 4 517 173 45 0 chr3 36721020 36721130 -190803448 + L1MA4 LINE L1 6181 6295 -5 419 233 6 126 chr3 36722422 36722581 -190801997 + MIR SINE MIR 3 142 -120 7698 227 68 33 chr3 36722616 36722977 -190801601 - L1MC/D LINE L1 -502 6134 5787 1619 201 3 10 chr3 36722977 36723280 -190801298 - AluJo SINE Alu -11 301 1 7698 227 68 33 chr3 36723280 36724134 -190800444 - L1MC/D LINE L1 -849 5787 4964 24 0 0 0 chr3 36724134 36724158 -190800420 + AT_rich Low_complexity Low_complexity 1 24 0 7698 227 68 33 chr3 36724158 36724378 -190800200 - L1MC/D LINE L1 -1672 4964 4753 2174 117 0 0 chr3 36724378 36724676 -190799902 - AluSx SINE Alu -14 298 1 7698 227 68 33 chr3 36724676 36727908 -190796670 - L1MC/D LINE L1 -1883 4753 1167 1475 189 3 54 chr3 36727914 36728018 -190796560 + AluJb SINE Alu 7 115 -197 2616 118 0 3 chr3 36728018 36728383 -190796195 + THE1B LTR MaLR 1 364 0 10062 122 18 28 chr3 36728383 36729979 -190794599 + THE1B-int LTR MaLR 1 1580 0 2472 86 5 62 chr3 36729981 36730365 -190794213 + THE1B LTR MaLR 3 364 0 1475 189 3 54 chr3 36730365 36730569 -190794009 + AluJb SINE Alu 115 303 -9 4108 250 84 6 chr3 36730571 36731636 -190792942 - L1MC/D LINE L1 -5367 1173 26 180 0 0 0 chr3 36731687 36731707 -190792871 + (TA)n Simple_repeat Simple_repeat 2 21 0 717 249 6 45 chr3 36732219 36732396 -190792182 + MER5A DNA MER1_type 1 170 -19 353 286 191 6 chr3 36732451 36732619 -190791959 + MIR SINE MIR 64 262 0 475 273 201 5 chr3 36733533 36733742 -190790836 - MIR SINE MIR 0 262 13 182 422 60 18 chr3 36734303 36734521 -190790057 + L3 LINE CR1 209 435 -1142 770 68 0 0 chr3 36735474 36735577 -190789001 + AluY SINE Alu 209 311 0 462 270 104 74 chr3 36736017 36736247 -190788331 - MIR SINE MIR -11 251 15 470 255 60 13 chr3 36736398 36736547 -190788031 - L1ME3A LINE L1 -9 6161 6006 902 272 51 44 chr3 36736559 36736878 -190787700 - L1ME3A LINE L1 -404 5766 5442 2416 46 30 16 chr3 36736878 36737183 -190787395 - AluY SINE Alu 0 311 3 902 272 51 44 chr3 36737183 36737253 -190787325 - L1ME3A LINE L1 -728 5442 5374 253 256 49 12 chr3 36739269 36739351 -190785227 + MLT1K LTR MaLR 504 588 0 252 59 0 0 chr3 36739405 36739439 -190785139 + (T)n Simple_repeat Simple_repeat 1 34 0 309 231 0 26 chr3 36739884 36739962 -190784616 - L1P LINE L1 -1052 5094 5019 537 89 13 0 chr3 36739963 36740042 -190784536 - MER57B-int LTR ERV1 -2151 5386 5307 * 1330 153 32 20 chr3 36740033 36740603 -190783975 - MER57B-int LTR ERV1 -1986 4277 734 23804 78 8 4 chr3 36740603 36744724 -190779854 - L1PA7 LINE L1 0 6154 2020 2537 160 30 0 chr3 36744746 36745152 -190779426 - MER57B-int LTR ERV1 -5241 705 288 * 4175 151 21 6 chr3 36745149 36745811 -190778767 - MER57B-int LTR ERV1 -6865 672 1 2892 125 7 0 chr3 36745811 36746242 -190778336 - MER57B LTR ERV1 0 434 1 1147 138 0 0 chr3 36746246 36746427 -190778151 + L1PB3 LINE L1 20 200 -6663 5724 108 200 15 chr3 36746429 36747435 -190777143 + L1PB3 LINE L1 636 1827 -5036 8396 214 25 24 chr3 36747437 36749522 -190775056 + L1PB3 LINE L1 3816 5901 -961 1223 201 61 4 chr3 36749525 36749788 -190774790 - L1 LINE L1 -1777 4369 4092 5757 95 44 0 chr3 36749788 36750359 -190774219 + L1PB1 LINE L1 5190 5816 -335 351 0 0 0 chr3 36750359 36750398 -190774180 + (TA)n Simple_repeat Simple_repeat 1 39 0 5757 95 44 0 chr3 36750398 36750750 -190773828 + L1PB1 LINE L1 5816 6151 0 5066 117 42 9 chr3 36750757 36751567 -190773011 + L1PB3 LINE L1 6030 6866 -4 937 242 54 4 chr3 36751738 36751998 -190772580 + ORSL DNA AcHobo 1 273 -2 35 54 0 0 chr3 36755088 36755144 -190769434 + AT_rich Low_complexity Low_complexity 1 56 0 792 223 73 15 chr3 36755144 36755350 -190769228 + MER20 DNA MER1_type 1 218 -1 228 67 0 0 chr3 36755369 36755399 -190769179 + (TATG)n Simple_repeat Simple_repeat 3 32 0 481 256 8 16 chr3 36755999 36756120 -190768458 + MER5C DNA MER1_type 1 120 -204 1151 142 0 0 chr3 36756316 36756492 -190768086 + AluSg/x SINE Alu 128 303 -9 894 274 94 32 chr3 36756736 36757109 -190767469 - MLT1I LTR MaLR -8 401 6 186 293 259 26 chr3 36757258 36757374 -190767204 + MIR SINE MIR 54 196 -66 10547 182 49 6 chr3 36758107 36761006 -190763572 - L1PA15 LINE L1 -266 5899 2877 1582 181 58 4 chr3 36761068 36761344 -190763234 + AluSx SINE Alu 3 293 -19 1145 236 97 20 chr3 36761515 36761962 -190762616 + MLT1H LTR MaLR 5 526 -4 515 194 0 0 chr3 36762126 36762229 -190762349 - MLT1D LTR MaLR 0 505 403 2213 250 38 2 chr3 36762235 36762815 -190761763 - MLT1D-int LTR MaLR -765 606 6 1684 200 63 78 chr3 36762820 36763330 -190761248 - MLT1D LTR MaLR 0 505 4 1597 146 42 0 chr3 36763759 36764022 -190760556 + AluSg SINE Alu 35 307 0 219 145 13 26 chr3 36764169 36764245 -190760333 + (TATAA)n Simple_repeat Simple_repeat 2 76 0 477 371 25 17 chr3 36765540 36765780 -190758798 + MIR SINE MIR 2 243 -19 180 348 0 0 chr3 36766388 36766434 -190758144 - MIR SINE MIR 0 262 217 338 244 118 16 chr3 36767537 36767664 -190756914 - MER117 DNA MER1_type -50 147 8 846 191 52 0 chr3 36767963 36768173 -190756405 + L1MA4 LINE L1 6074 6294 -6 416 263 184 66 chr3 36770892 36771257 -190753321 + MLT1H LTR MaLR 130 537 -12 2341 60 0 3 chr3 36771573 36771881 -190752697 + AluY SINE Alu 1 307 0 344 266 71 9 chr3 36772202 36772315 -190752263 + L2 LINE L2 3192 3311 -2 223 333 0 29 chr3 36772433 36772502 -190752076 + L2 LINE L2 3200 3266 -6 6913 146 15 12 chr3 36773545 36774712 -190749866 - L1PA14 LINE L1 -1 6160 4990 1846 162 0 3 chr3 36774712 36775002 -190749576 - AluSx SINE Alu -23 289 1 6913 146 15 12 chr3 36775002 36775976 -190748602 - L1PA14 LINE L1 -1171 4990 4020 1248 224 6 22 chr3 36775975 36776297 -190748281 + L1P LINE L1 2644 2960 -3186 * 4783 183 43 18 chr3 36778587 36778790 -190745788 + L1P LINE L1 2941 3137 -3009 2008 145 0 3 chr3 36778790 36779079 -190745499 + AluSq SINE Alu 1 288 -25 4783 183 43 18 chr3 36779079 36779918 -190744660 + L1P LINE L1 3137 4009 -2137 264 267 13 27 chr3 36779919 36779994 -190744584 - L2 LINE L2 -20 3293 3220 521 259 0 0 chr3 36780026 36780134 -190744444 - MIR SINE MIR -149 113 6 391 154 13 0 chr3 36780144 36780222 -190744356 - L1MC2 LINE L1 -1 6343 6265 257 366 105 41 chr3 36780380 36780798 -190743780 - L2 LINE L2 0 3272 2828 365 314 40 0 chr3 36781662 36781786 -190742792 - MLT1J LTR MaLR -112 399 271 221 282 69 40 chr3 36781834 36781905 -190742673 - L2 LINE L2 -2442 872 805 1633 99 177 4 chr3 36781905 36782172 -190742406 + AluSg1 SINE Alu 1 309 0 221 282 69 40 chr3 36782172 36782273 -190742305 - L2 LINE L2 -2509 805 694 11621 247 47 34 chr3 36782347 36789666 -190734912 - L1PB3 LINE L1 -2 6868 3 22 0 0 0 chr3 36789681 36789703 -190734875 + AT_rich Low_complexity Low_complexity 1 22 0 229 295 54 30 chr3 36789981 36790147 -190734431 - HAL1b LINE L1 -442 906 737 22 70 0 0 chr3 36790309 36790352 -190734226 + AT_rich Low_complexity Low_complexity 1 43 0 801 295 75 106 chr3 36790688 36791444 -190733134 - HAL1 LINE L1 -961 1546 814 265 382 16 0 chr3 36791660 36791783 -190732795 - LTR67 LTR ERVL -2 555 431 384 354 24 41 chr3 36791895 36792141 -190732437 - LTR67 LTR ERVL -296 261 20 1073 232 9 0 chr3 36792846 36793066 -190731512 - MER58A DNA MER1_type -2 222 1 21 0 0 0 chr3 36793623 36793644 -190730934 + AT_rich Low_complexity Low_complexity 1 21 0 688 261 29 24 chr3 36794604 36794811 -190729767 + MIR SINE MIR 1 208 -54 405 198 47 0 chr3 36794870 36794956 -190729622 - MER5A DNA MER1_type -83 106 17 215 222 0 0 chr3 36795014 36795059 -190729519 + (CAT)n Simple_repeat Simple_repeat 1 45 0 195 281 31 16 chr3 36795105 36795169 -190729409 + L2 LINE L2 3171 3235 -78 209 328 62 8 chr3 36795246 36795374 -190729204 + L2 LINE L2 2221 2355 -959 5014 169 31 6 chr3 36795787 36796437 -190728141 + L1M1 LINE L1 4310 4942 -1358 306 50 0 0 chr3 36796437 36796477 -190728101 + (TC)n Simple_repeat Simple_repeat 1 40 0 5014 169 31 6 chr3 36796477 36797091 -190727487 + L1M1 LINE L1 4942 5607 -693 * 32176 36 38 2 chr3 36797089 36801091 -190723487 - L1P LINE L1 -1999 4147 2 719 296 109 57 chr3 36801261 36801931 -190722647 - HAL1 LINE L1 -1163 1344 640 585 339 53 12 chr3 36802047 36802369 -190722209 - HAL1 LINE L1 -2090 417 83 1703 188 7 13 chr3 36802375 36802679 -190721899 + AluSx SINE Alu 1 302 -10 411 56 0 0 chr3 36803074 36803128 -190721450 + (TG)n Simple_repeat Simple_repeat 1 54 0 540 301 77 29 chr3 36803828 36804074 -190720504 - MIR SINE MIR 0 262 5 1837 115 41 4 chr3 36805089 36805358 -190719220 + AluSg SINE Alu 14 292 -18 23 0 0 0 chr3 36805373 36805396 -190719182 + AT_rich Low_complexity Low_complexity 1 23 0 1003 182 155 54 chr3 36805458 36805754 -190718824 + MLT1A1 LTR MaLR 1 326 -39 248 314 92 22 chr3 36806094 36806279 -190718299 - LTR33A LTR ERVL -27 496 299 189 147 0 0 chr3 36806416 36806450 -190718128 + (TA)n Simple_repeat Simple_repeat 1 34 0 495 321 69 33 chr3 36806581 36807014 -190717564 - L1M4 LINE L1 -2644 3502 3047 220 227 0 15 chr3 36807023 36807089 -190717489 + (TA)n Simple_repeat Simple_repeat 2 66 0 307 250 136 21 chr3 36807381 36807521 -190717057 - L1MEd LINE L1 -5283 836 681 2239 135 34 17 chr3 36807714 36808070 -190716508 + THE1B LTR MaLR 1 362 -2 10773 108 33 1 chr3 36808072 36809603 -190714975 + THE1B-int LTR MaLR 1 1580 0 2410 133 11 0 chr3 36809603 36809963 -190714615 + THE1B LTR MaLR 1 364 0 904 188 19 48 chr3 36810060 36810267 -190714311 - MLT1A2 LTR MaLR 0 374 174 320 164 15 0 chr3 36810271 36810338 -190714240 + GA-rich Low_complexity Low_complexity 1 68 0 717 200 48 14 chr3 36810338 36810483 -190714095 - MLT1A2 LTR MaLR -189 176 27 2073 118 0 51 chr3 36812298 36812612 -190711966 - AluSx SINE Alu -14 298 1 1995 143 0 3 chr3 36813461 36813762 -190710816 - AluSc SINE Alu -9 300 1 26 30 0 0 chr3 36815068 36815101 -190709477 + AT_rich Low_complexity Low_complexity 1 33 0 237 310 28 0 chr3 36815174 36815245 -190709333 + HsTC2 DNA Tc2 1 73 -1825 346 255 6 104 chr3 36815303 36815374 -190709204 + HsTC2 DNA Tc2 1144 1220 -678 2636 90 3 0 chr3 36815374 36815728 -190708850 + THE1A LTR MaLR 1 355 0 346 255 6 104 chr3 36815728 36815790 -190708788 + HsTC2 DNA Tc2 1220 1287 -611 5052 73 15 0 chr3 36815790 36816462 -190708116 - L1PA8 LINE L1 0 6172 5491 346 255 6 104 chr3 36816462 36816586 -190707992 + HsTC2 DNA Tc2 1287 1543 -355 256 247 99 12 chr3 36817367 36817448 -190707130 - MIR SINE MIR -74 188 101 8054 37 1 1 chr3 36817448 36818443 -190706135 - L1P LINE L1 -3052 3094 2100 7390 32 6 9 chr3 36818443 36819432 -190705146 + L1PA3 LINE L1 4916 5909 -246 2740 13 0 0 chr3 36819432 36819732 -190704846 - AluYa5 SINE Alu -11 300 1 7390 32 6 9 chr3 36819732 36819979 -190704599 + L1PA3 LINE L1 5909 6155 0 332 321 9 0 chr3 36820455 36820561 -190704017 + MIR3 SINE MIR 102 208 0 728 151 8 0 chr3 36820592 36820711 -190703867 + AluJb SINE Alu 1 120 -192 2075 157 94 0 chr3 36820752 36821147 -190703431 + MSTB1 LTR MaLR 1 432 0 232 254 48 56 chr3 36821286 36821412 -190703166 + MIR SINE MIR 74 198 -64 308 299 29 29 chr3 36821977 36822114 -190702464 - MER5A DNA MER1_type -6 183 47 3861 146 23 0 chr3 36823210 36823861 -190700717 + L1PA16 LINE L1 5496 6161 -5 27 62 0 0 chr3 36823903 36823951 -190700627 + AT_rich Low_complexity Low_complexity 1 48 0 368 289 182 13 chr3 36824308 36824467 -190700111 + MIR SINE MIR 11 196 -66 235 308 128 8 chr3 36826430 36826547 -190698031 - L2 LINE L2 -1 3312 3182 193 222 0 37 chr3 36826700 36826754 -190697824 - L2 LINE L2 -240 3073 3022 337 227 23 31 chr3 36826793 36826921 -190697657 - L1ME4a LINE L1 -5 6116 5990 180 313 62 42 chr3 36827256 36827352 -190697226 + MIR SINE MIR 165 262 0 29 28 0 0 chr3 36827498 36827534 -190697044 + AT_rich Low_complexity Low_complexity 1 36 0 863 309 83 47 chr3 36827726 36828277 -190696301 + MLT1K LTR MaLR 10 580 -8 327 302 87 27 chr3 36830569 36830718 -190693860 + MIR SINE MIR 61 218 -44 504 277 31 31 chr3 36830740 36830899 -190693679 - MIR SINE MIR -28 234 76 222 62 0 0 chr3 36833978 36834010 -190690568 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 2144 133 3 0 chr3 36834010 36834312 -190690266 - AluSx SINE Alu -9 303 1 2294 108 0 13 chr3 36834858 36835173 -190689405 + AluSx SINE Alu 1 311 -1 475 207 0 11 chr3 36835799 36835886 -190688692 + MER5A DNA MER1_type 2 87 -102 187 325 115 58 chr3 36835976 36836167 -190688411 - L3b LINE CR1 -5 1578 1377 1870 165 0 10 chr3 36836275 36836578 -190688000 - AluSx SINE Alu -12 300 1 1657 191 27 12 chr3 36837900 36838236 -190686342 - MER58B DNA MER1_type 0 341 1 316 196 0 0 chr3 36839715 36839771 -190684807 - MER103 DNA DNA -52 114 59 22 35 0 0 chr3 36839973 36840002 -190684576 + AT_rich Low_complexity Low_complexity 1 29 0 1132 144 90 0 chr3 36840357 36840558 -190684020 - MER20 DNA MER1_type 0 219 1 189 107 0 0 chr3 36841556 36841584 -190682994 + (GGGAA)n Simple_repeat Simple_repeat 2 29 0 492 231 22 7 chr3 36843032 36843217 -190681361 - MER58A DNA MER1_type 0 224 5 285 312 0 0 chr3 36844136 36844213 -190680365 + CT-rich Low_complexity Low_complexity 2 78 0 348 278 7 86 chr3 36844297 36844448 -190680130 + L2 LINE L2 2586 2724 -590 277 308 112 0 chr3 36844765 36844872 -190679706 + L2 LINE L2 3190 3308 -5 31 0 0 0 chr3 36845489 36845520 -190679058 + AT_rich Low_complexity Low_complexity 1 31 0 1514 215 3 10 chr3 36845520 36845818 -190678760 - AluJo SINE Alu -16 296 1 260 275 9 9 chr3 36846136 36846245 -190678333 + (TA)n Simple_repeat Simple_repeat 2 110 0 431 284 78 27 chr3 36846360 36846698 -190677880 - MLT1L LTR MaLR -52 563 108 2220 109 0 3 chr3 36846997 36847301 -190677277 + AluSc SINE Alu 1 303 -6 183 129 0 0 chr3 36847398 36847429 -190677149 + (TATG)n Simple_repeat Simple_repeat 2 32 0 211 205 0 0 chr3 36847613 36847652 -190676926 + CT-rich Low_complexity Low_complexity 2 40 0 3377 200 32 20 chr3 36848503 36849258 -190675320 - L1MB3 LINE L1 -2 6181 5418 180 0 0 0 chr3 36849513 36849533 -190675045 + (T)n Simple_repeat Simple_repeat 1 20 0 611 310 10 5 chr3 36849570 36849770 -190674808 - L2 LINE L2 -1 3312 3112 1592 211 141 98 chr3 36849774 36850399 -190674179 - MLT1E1 LTR MaLR -2 652 1 491 289 80 30 chr3 36850511 36850712 -190673866 - L2 LINE L2 -337 2977 2767 2419 172 32 22 chr3 36850864 36851364 -190673214 - L1MC2 LINE L1 -26 6318 5814 1365 180 20 0 chr3 36851381 36851631 -190672947 - L1PA16 LINE L1 -10 6156 5902 267 79 0 0 chr3 36853293 36853331 -190671247 + (CA)n Simple_repeat Simple_repeat 1 38 0 5983 147 73 30 chr3 36853348 36853968 -190670610 - Tigger3b DNA MER2_type -1798 1230 638 2184 125 0 7 chr3 36853968 36854272 -190670306 - AluSx SINE Alu -10 302 1 5983 147 73 30 chr3 36854272 36854830 -190669748 - Tigger3b DNA MER2_type -2390 638 1 2600 62 0 0 chr3 36854951 36855260 -190669318 - AluY SINE Alu -2 309 1 1035 193 18 49 chr3 36855576 36855799 -190668779 + MER58A DNA MER1_type 7 222 -2 196 245 191 11 chr3 36856771 36856865 -190667713 + L2 LINE L2 2170 2280 -1034 435 347 21 7 chr3 36856895 36857039 -190667539 + L2 LINE L2 3123 3268 -4 248 218 0 13 chr3 36857487 36857565 -190667013 + GA-rich Low_complexity Low_complexity 4 80 0 631 268 33 38 chr3 36857737 36857950 -190666628 - MIR SINE MIR -50 212 1 298 345 148 27 chr3 36857968 36858189 -190666389 - MIR SINE MIR -14 248 1 256 48 48 0 chr3 36859379 36859421 -190665157 + (CA)n Simple_repeat Simple_repeat 2 45 0 2171 75 0 0 chr3 36859907 36860174 -190664404 + AluY SINE Alu 34 300 -11 2144 123 0 3 chr3 36861172 36861474 -190663104 - AluSq SINE Alu -12 301 1 531 261 112 21 chr3 36861836 36862024 -190662554 + MIR SINE MIR 57 261 -1 325 306 153 28 chr3 36862215 36862431 -190662147 + LTR16C LTR ERVL 67 309 -182 3889 144 69 90 chr3 36862447 36863363 -190661215 - MER4D LTR ERV1 0 872 1 180 0 0 0 chr3 36863467 36863487 -190661091 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 626 284 7 58 chr3 36863539 36863814 -190660764 + MIR SINE MIR 2 262 0 2241 230 42 76 chr3 36864348 36864922 -190659656 - L1ME2 LINE L1 -1 6163 5571 2273 103 3 0 chr3 36864922 36865224 -190659354 - AluSg SINE Alu -7 303 1 2070 119 7 7 chr3 36865226 36865521 -190659057 - AluSq SINE Alu -18 295 1 2241 230 42 76 chr3 36865521 36865547 -190659031 - L1ME2 LINE L1 -594 5570 5545 2294 87 10 0 chr3 36865547 36865846 -190658732 + AluSp SINE Alu 1 302 -11 2241 230 42 76 chr3 36865846 36866101 -190658477 - L1ME2 LINE L1 -619 5545 5333 1008 326 45 0 chr3 36866334 36866665 -190657913 + LTR16C LTR ERVL 138 483 -8 2198 114 0 0 chr3 36867548 36867838 -190656740 - AluY SINE Alu -21 290 1 352 345 54 37 chr3 36867878 36868174 -190656404 - L2 LINE L2 -979 2335 2035 331 248 200 0 chr3 36871514 36871639 -190652939 + L1MC/D LINE L1 5543 5692 -2116 784 271 77 92 chr3 36871693 36872415 -190652163 - L2 LINE L2 -1 3312 2616 776 290 57 4 chr3 36872677 36872747 -190651831 - MIR SINE MIR 0 262 197 333 0 0 0 chr3 36872747 36872784 -190651794 + (CA)n Simple_repeat Simple_repeat 1 37 0 776 290 57 4 chr3 36872784 36872961 -190651617 - MIR SINE MIR -65 197 2 2096 206 20 39 chr3 36874110 36874621 -190649957 - MLT1D LTR MaLR 0 505 5 180 111 0 0 chr3 36875553 36875580 -190648998 + (T)n Simple_repeat Simple_repeat 1 27 0 180 0 0 0 chr3 36875844 36875864 -190648714 + (A)n Simple_repeat Simple_repeat 1 20 0 765 244 205 21 chr3 36876538 36876675 -190647903 + Charlie2 DNA MER1_type 28 139 -2723 449 229 98 0 chr3 36876675 36876797 -190647781 - MER94 DNA DNA 0 134 1 765 244 205 21 chr3 36876797 36876991 -190647587 + Charlie2 DNA MER1_type 139 420 -2442 476 192 83 0 chr3 36877001 36877121 -190647457 + Charlie2 DNA MER1_type 2729 2858 -4 273 264 47 28 chr3 36877395 36877501 -190647077 - MLT1L LTR MaLR -2 613 506 1384 272 70 93 chr3 36877509 36878109 -190646469 + MLT1G LTR MaLR 10 590 0 295 264 0 0 chr3 36878131 36878203 -190646375 - MLT1L LTR MaLR -131 484 413 2741 135 28 12 chr3 36878342 36878838 -190645740 - L1MA8 LINE L1 -5 7705 7202 910 192 77 0 chr3 36878869 36879051 -190645527 - L1MA8 LINE L1 -709 7001 6806 3784 192 25 15 chr3 36879052 36879937 -190644641 - L1MA8 LINE L1 -2368 5197 4304 589 178 89 6 chr3 36879931 36880088 -190644490 - L1MA8 LINE L1 -3968 3597 3428 * 2367 249 70 12 chr3 36880108 36880203 -190644375 - L1 LINE L1 -3240 3866 3778 381 22 0 0 chr3 36880203 36880249 -190644329 + (TA)n Simple_repeat Simple_repeat 2 47 0 2367 249 70 12 chr3 36880249 36881140 -190643438 - L1 LINE L1 -3328 3778 2815 721 215 0 0 chr3 36881159 36881289 -190643289 - FLAM_C SINE Alu -11 132 3 2676 239 133 45 chr3 36881294 36882709 -190641869 - L1 LINE L1 -4324 2782 1433 2321 173 33 74 chr3 36882709 36883287 -190641291 - MLT2B3 LTR ERVL 0 554 1 2676 239 133 45 chr3 36883287 36883915 -190640663 - L1 LINE L1 -5673 1433 861 269 305 24 0 chr3 36883917 36883999 -190640579 - MLT1L LTR MaLR -531 84 1 27 18 7 0 chr3 36884111 36884187 -190640391 + AT_rich Low_complexity Low_complexity 1 34 0 239 273 0 142 chr3 36884441 36884617 -190639961 - L2 LINE L2 -2 3311 3161 435 358 33 17 chr3 36884712 36884952 -190639626 + MIR SINE MIR 15 258 -4 25 51 0 0 chr3 36885715 36885754 -190638824 + AT_rich Low_complexity Low_complexity 1 39 0 500 231 146 42 chr3 36886733 36887041 -190637537 - L1ME3A LINE L1 -225 5945 5606 365 274 57 5 chr3 36887105 36887317 -190637261 - L1ME3A LINE L1 -786 5360 5138 342 285 93 104 chr3 36887784 36888332 -190636246 - L1MC4a LINE L1 -1914 5894 5353 279 179 18 0 chr3 36890219 36890275 -190634303 - MIR SINE MIR -11 251 195 841 322 79 15 chr3 36890293 36890697 -190633881 - MLT1J2 LTR MaLR -18 432 3 537 306 109 30 chr3 36890717 36891149 -190633429 - L2 LINE L2 -81 3232 2785 586 298 73 15 chr3 36891158 36891363 -190633215 - MIR SINE MIR -37 225 9 229 385 78 8 chr3 36892584 36892707 -190631871 + MIR3 SINE MIR 14 145 -103 296 341 0 0 chr3 36893375 36893460 -190631118 - L2 LINE L2 0 3313 3229 2530 61 0 3 chr3 36893597 36893908 -190630670 - AluY SINE Alu -1 310 1 215 277 96 43 chr3 36894052 36894146 -190630432 + MIR3 SINE MIR 101 199 -9 355 321 75 27 chr3 36894239 36894426 -190630152 + MER117 DNA MER1_type 2 197 0 321 358 15 22 chr3 36894734 36894871 -190629707 + L2 LINE L2 3134 3269 -3 21 0 0 0 chr3 36896734 36896755 -190627823 + AT_rich Low_complexity Low_complexity 1 21 0 378 333 48 0 chr3 36897320 36897488 -190627090 - MIR SINE MIR -3 259 84 360 88 18 0 chr3 36899832 36899889 -190624689 + THE1B-int LTR MaLR 1523 1580 0 2297 109 22 30 chr3 36899889 36900256 -190624322 + THE1B LTR MaLR 1 364 0 634 289 83 8 chr3 36900645 36900887 -190623691 - MIR SINE MIR 0 262 3 355 264 132 18 chr3 36901069 36901236 -190623342 - MLT1J LTR MaLR -317 194 9 794 232 95 93 chr3 36902010 36902520 -190622058 - L2 LINE L2 -72 3241 2733 4267 324 43 18 chr3 36902729 36905406 -190619172 - ERVL LTR ERVL -358 5406 2625 1206 313 110 20 chr3 36905418 36906025 -190618553 - L2 LINE L2 -1078 2236 1575 429 20 0 0 chr3 36906198 36906248 -190618330 + (CA)n Simple_repeat Simple_repeat 2 51 0 1065 211 36 36 chr3 36906653 36906876 -190617702 - MER58A DNA MER1_type -1 223 1 2150 118 3 0 chr3 36907114 36907411 -190617167 + AluSx SINE Alu 1 298 -14 32 26 0 0 chr3 36907500 36907539 -190617039 + AT_rich Low_complexity Low_complexity 1 39 0 384 389 83 15 chr3 36907851 36908175 -190616403 + MLT1K LTR MaLR 82 427 -161 3588 52 4 4 chr3 36908629 36909093 -190615485 - L1PA8 LINE L1 0 6172 5709 302 288 54 9 chr3 36909196 36909307 -190615271 - MIR SINE MIR -30 232 117 192 200 0 0 chr3 36909321 36909351 -190615227 + MIR SINE MIR 116 145 -63 736 302 35 16 chr3 36909717 36909972 -190614606 + MIR SINE MIR 2 261 -1 463 259 97 21 chr3 36911524 36912405 -190612173 - HAL1 LINE L1 -100 2407 1278 216 330 55 0 chr3 36912413 36912504 -190612074 - L2 LINE L2 -503 2811 2716 775 298 123 11 chr3 36912609 36913136 -190611442 - L1MC4a LINE L1 -1642 6166 5581 2395 94 0 3 chr3 36913141 36913450 -190611128 - AluSq SINE Alu -5 308 1 324 285 24 32 chr3 36913470 36913593 -190610985 + MIR SINE MIR 4 125 -137 626 305 64 84 chr3 36913747 36914294 -190610284 - L2 LINE L2 -1615 1699 1164 244 210 62 49 chr3 36914501 36914582 -190609996 + MIR SINE MIR 171 252 -10 181 171 114 0 chr3 36914552 36914587 -190609991 + L2 LINE L2 3268 3306 -7 * 288 284 0 0 chr3 36915609 36915676 -190608902 + L2 LINE L2 3247 3313 0 21 82 0 0 chr3 36916795 36916844 -190607734 + AT_rich Low_complexity Low_complexity 1 49 0 2041 245 103 21 chr3 36917116 36917745 -190606833 - L1ME1 LINE L1 -2 6164 5484 306 50 0 0 chr3 36917752 36917792 -190606786 + (TC)n Simple_repeat Simple_repeat 1 40 0 1125 183 68 0 chr3 36917822 36918013 -190606565 - AluJo SINE Alu -108 204 1 437 162 33 0 chr3 36918014 36918168 -190606410 + CT-rich Low_complexity Low_complexity 1 159 0 2433 236 61 40 chr3 36918202 36918502 -190606076 - L1ME1 LINE L1 -706 5460 5168 2142 137 0 0 chr3 36918502 36918808 -190605770 - AluSx SINE Alu -6 306 1 2433 236 61 40 chr3 36918808 36919484 -190605094 - L1ME1 LINE L1 -998 5168 4463 322 312 71 0 chr3 36919786 36919910 -190604668 - MIR SINE MIR -56 152 18 200 94 0 31 chr3 36920006 36920038 -190604540 + (TTTC)n Simple_repeat Simple_repeat 4 34 0 22 35 0 0 chr3 36920329 36920358 -190604220 + AT_rich Low_complexity Low_complexity 1 29 0 2394 251 38 56 chr3 36920605 36920710 -190603868 - L2 LINE L2 -48 3265 3160 2117 110 0 0 chr3 36920710 36921029 -190603549 + AluSg SINE Alu 1 319 0 1551 186 7 26 chr3 36921035 36921342 -190603236 + AluJb SINE Alu 1 301 -11 2394 251 38 56 chr3 36921342 36922234 -190602344 - L2 LINE L2 -158 3155 2274 328 312 14 64 chr3 36922191 36922332 -190602246 + MIR SINE MIR 8 141 -121 * 392 231 0 100 chr3 36922547 36922611 -190601967 - L2 LINE L2 -1035 2279 2233 2032 104 49 3 chr3 36922611 36922899 -190601679 - AluSg SINE Alu -7 303 3 392 231 0 100 chr3 36922899 36922964 -190601614 - L2 LINE L2 -1081 2233 2163 2067 112 6 19 chr3 36923045 36923386 -190601192 - AluY SINE Alu 0 311 1 286 247 80 87 chr3 36924324 36924543 -190600035 - MIR SINE MIR -34 228 7 234 267 50 40 chr3 36924895 36924996 -190599582 + L1MC4 LINE L1 6605 6706 -1336 26 98 0 0 chr3 36925072 36925154 -190599424 + AT_rich Low_complexity Low_complexity 1 82 0 226 23 45 114 chr3 36925154 36925242 -190599336 + (TTAA)n Simple_repeat Simple_repeat 2 83 0 379 206 54 11 chr3 36925275 36925367 -190599211 - L1ME3 LINE L1 -66 6096 6001 405 254 0 18 chr3 36925428 36925542 -190599036 - L1ME3 LINE L1 -450 5712 5601 453 302 45 45 chr3 36925552 36925797 -190598781 + L3b LINE CR1 1117 1361 -222 670 315 65 0 chr3 36926198 36926430 -190598148 + L1ME LINE L1 7 253 -5817 266 253 60 12 chr3 36926766 36926849 -190597729 - MER91C DNA MER1_type -30 110 24 373 326 126 7 chr3 36926872 36927007 -190597571 - MER91A DNA MER1_type -45 151 1 1446 254 129 24 chr3 36927477 36928015 -190596563 - MLT1E2 LTR MaLR 0 505 1 2771 164 182 39 chr3 36928326 36929045 -190595533 - LTR1B LTR ERV1 -4 822 1 375 274 18 35 chr3 36929046 36929159 -190595419 - L2 LINE L2 -15 3298 3188 492 144 4 1 chr3 36930861 36931090 -190593488 + AluSc SINE Alu 36 297 -12 198 346 25 12 chr3 36931092 36931173 -190593405 - MIR SINE MIR -86 122 41 28 0 0 0 chr3 36931545 36931573 -190593005 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr3 36933301 36933325 -190591253 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1298 226 76 100 chr3 36933327 36933804 -190590774 + L1MC4 LINE L1 7345 7801 -241 2391 93 0 3 chr3 36933804 36934116 -190590462 + AluY SINE Alu 1 311 0 1298 226 76 100 chr3 36934116 36934351 -190590227 + L1MC4 LINE L1 7801 8040 -2 667 291 147 39 chr3 36934476 36935275 -190589303 + L2 LINE L2 2424 3312 -1 631 266 89 30 chr3 36935293 36935687 -190588891 - LTR33A LTR ERVL -4 519 66 2217 176 31 10 chr3 36936466 36936881 -190587697 + MSTB LTR MaLR 1 424 -2 192 316 11 32 chr3 36937877 36937972 -190586606 - MIR SINE MIR -38 224 132 2386 82 0 7 chr3 36938260 36938564 -190586014 + AluSp SINE Alu 1 302 -11 387 348 27 11 chr3 36938650 36938837 -190585741 - MIR3 SINE MIR 0 208 19 24 53 0 0 chr3 36938939 36938977 -190585601 + AT_rich Low_complexity Low_complexity 1 38 0 2090 119 0 45 chr3 36939037 36939349 -190585229 - AluSx SINE Alu -14 298 1 1591 127 92 50 chr3 36939759 36940042 -190584536 + AluSx SINE Alu 1 295 -17 489 76 0 0 chr3 36940045 36940111 -190584467 + (CA)n Simple_repeat Simple_repeat 2 67 0 23 54 0 0 chr3 36941694 36941731 -190582847 + AT_rich Low_complexity Low_complexity 1 37 0 419 315 34 0 chr3 36942351 36942500 -190582078 - MIR SINE MIR -35 227 74 474 240 50 75 chr3 36942798 36942998 -190581580 - LTR16A1 LTR ERVL 0 457 263 26 0 0 0 chr3 36943269 36943295 -190581283 + AT_rich Low_complexity Low_complexity 1 26 0 1989 131 0 0 chr3 36943295 36943569 -190581009 - AluSx SINE Alu -36 276 3 183 42 0 0 chr3 36944571 36944595 -190579983 + (CTTA)n Simple_repeat Simple_repeat 1 24 0 375 353 65 56 chr3 36945022 36945359 -190579219 + L2 LINE L2 2836 3175 -97 1067 217 65 70 chr3 36945493 36945848 -190578730 - LTR16A1 LTR ERVL -6 451 99 423 161 0 12 chr3 36945932 36946013 -190578565 + MADE1 DNA Mariner 1 80 0 326 200 0 0 chr3 36946036 36946096 -190578482 - MIR SINE MIR -12 250 191 289 265 24 112 chr3 36946228 36946398 -190578180 - MER104 DNA Tc2 -4 176 22 975 254 89 106 chr3 36948179 36948978 -190575600 - L2 LINE L2 -4 3309 2516 1903 171 3 20 chr3 36949059 36949409 -190575169 - MER2 DNA MER2_type 0 344 1 1104 307 83 7 chr3 36950680 36951136 -190573442 - L2 LINE L2 -5 3308 2818 866 193 0 6 chr3 36951239 36951400 -190573178 - L1PB4 LINE L1 -7 6149 5990 666 289 62 19 chr3 36951689 36952009 -190572569 + MLT1L LTR MaLR 74 327 -184 204 267 300 0 chr3 36954121 36954211 -190570367 - L2 LINE L2 -19 3294 3178 363 44 0 0 chr3 36954331 36954376 -190570202 + (CA)n Simple_repeat Simple_repeat 2 46 0 879 123 8 0 chr3 36956267 36956389 -190568189 + FLAM_C SINE Alu 1 123 -20 372 22 0 0 chr3 36956392 36956437 -190568141 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 532 151 0 0 chr3 36957837 36957930 -190566648 + L1MA1 LINE L1 6066 6158 -144 320 74 56 0 chr3 36957930 36957982 -190566596 + L1MA3 LINE L1 6249 6305 0 609 250 155 14 chr3 36958078 36958362 -190566216 - MER5C DNA MER1_type 0 324 1 637 163 35 99 chr3 36958787 36958989 -190565589 + MER53 DNA DNA 1 189 0 1854 193 100 0 chr3 36959488 36959877 -190564701 - MSTA LTR MaLR 0 428 1 337 221 202 38 chr3 36960265 36960582 -190563996 - L1ME4a LINE L1 -25 6096 5728 1756 218 19 36 chr3 36960769 36961182 -190563396 - MLT2D LTR ERVL -8 406 1 292 287 52 22 chr3 36961421 36961557 -190563021 + MIR SINE MIR 65 204 -58 1743 210 8 24 chr3 36961613 36961984 -190562594 - MLT1A1 LTR MaLR 0 365 1 1216 177 32 8 chr3 36962283 36962531 -190562047 + Tigger7 DNA MER2_type 2237 2490 -1 363 322 81 0 chr3 36962533 36962707 -190561871 - L2 LINE L2 0 3313 3126 324 277 98 18 chr3 36962901 36963013 -190561565 - MLT1I LTR MaLR -218 191 71 298 287 0 8 chr3 36963186 36963308 -190561270 - MER113 DNA MER1_type? -394 127 7 22 0 0 0 chr3 36963706 36963728 -190560850 + AT_rich Low_complexity Low_complexity 1 22 0 2225 113 0 0 chr3 36963948 36964239 -190560339 - AluSp SINE Alu -22 291 1 2080 141 0 0 chr3 36964462 36964761 -190559817 + AluSx SINE Alu 3 301 -11 406 321 70 21 chr3 36965597 36965784 -190558794 + L2 LINE L2 2782 2977 -337 221 258 287 18 chr3 36965797 36965964 -190558614 - MIR SINE MIR -12 250 39 408 337 68 40 chr3 36966065 36966317 -190558261 + L2 LINE L2 3031 3289 -24 491 307 177 36 chr3 36966373 36966885 -190557693 - L2 LINE L2 -5 3308 2736 184 219 0 0 chr3 36966947 36966979 -190557599 - MIR SINE MIR -114 148 117 180 0 0 0 chr3 36967730 36967750 -190556828 + (T)n Simple_repeat Simple_repeat 1 20 0 226 250 19 0 chr3 36968019 36968071 -190556507 + CT-rich Low_complexity Low_complexity 2 54 0 552 213 0 0 chr3 36968481 36968603 -190555975 + T-rich Low_complexity Low_complexity 1 122 0 211 139 23 0 chr3 36968844 36968887 -190555691 + T-rich Low_complexity Low_complexity 2 45 0 222 37 0 0 chr3 36972223 36972250 -190552328 + (T)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr3 36975181 36975210 -190549368 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 36975407 36975429 -190549149 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr3 36979845 36979870 -190544708 + AT_rich Low_complexity Low_complexity 1 25 0 214 317 0 0 chr3 36981342 36981424 -190543154 + T-rich Low_complexity Low_complexity 1 82 0 747 120 0 0 chr3 36982772 36982889 -190541689 + (TA)n Simple_repeat Simple_repeat 1 117 0 206 274 121 81 chr3 36986376 36986500 -190538078 - L2 LINE L2 -6 3266 3138 21 36 0 0 chr3 36987071 36987099 -190537479 + AT_rich Low_complexity Low_complexity 1 28 0 1201 180 0 9 chr3 36987126 36987337 -190537241 - MER2 DNA MER2_type -136 209 1 741 283 115 49 chr3 36987466 36988103 -190536475 + L1ME4a LINE L1 5282 5960 -161 215 379 79 11 chr3 36988548 36988738 -190535840 - L2 LINE L2 -946 2368 2166 223 186 34 17 chr3 36989113 36989172 -190535406 + (TTTG)n Simple_repeat Simple_repeat 1 60 0 614 293 30 0 chr3 36989226 36989393 -190535185 - MER5A DNA MER1_type 0 189 18 22 0 0 0 chr3 36989497 36989519 -190535059 + AT_rich Low_complexity Low_complexity 1 22 0 1760 172 7 10 chr3 36989520 36989810 -190534768 - AluJo SINE Alu -23 289 1 21 0 0 0 chr3 36989889 36989910 -190534668 + AT_rich Low_complexity Low_complexity 1 21 0 229 307 13 27 chr3 36990676 36990751 -190533827 - MIR3 SINE MIR -7 201 128 2404 107 6 8 chr3 36991264 36991618 -190532960 - THE1A LTR MaLR -2 353 1 851 287 106 51 chr3 36992485 36992959 -190531619 + L2 LINE L2 2812 3311 -2 204 40 0 0 chr3 36993948 36993973 -190530605 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 26 64 0 0 chr3 36995375 36995422 -190529156 + AT_rich Low_complexity Low_complexity 1 47 0 261 241 0 0 chr3 36995788 36995842 -190528736 - L2 LINE L2 -5 3267 3214 248 309 0 0 chr3 36995883 36995938 -190528640 + L2 LINE L2 3198 3252 -20 213 65 0 0 chr3 36996235 36996266 -190528312 + (A)n Simple_repeat Simple_repeat 1 31 0 260 354 96 51 chr3 36996338 36996807 -190527771 - L2 LINE L2 -505 2809 2320 26 30 0 0 chr3 36996859 36996892 -190527686 + AT_rich Low_complexity Low_complexity 1 33 0 228 246 14 43 chr3 36996940 36997009 -190527569 - MIR SINE MIR -61 201 135 271 322 126 45 chr3 36997059 36997807 -190526771 - L2 LINE L2 -1150 2164 1357 216 167 0 0 chr3 36998413 36998449 -190526129 + (CAAAG)n Simple_repeat Simple_repeat 2 37 0 312 250 11 0 chr3 36999575 36999663 -190524915 - MER103 DNA DNA -71 95 7 419 299 11 17 chr3 37000039 37000216 -190524362 + CT-rich Low_complexity Low_complexity 1 176 0 263 231 222 9 chr3 37001872 37001980 -190522598 - MIR SINE MIR -104 158 28 192 261 15 62 chr3 37053123 37053188 -190471390 - L2 LINE L2 -2 3311 3250 707 307 12 16 chr3 37053687 37053938 -190470640 - MIR SINE MIR 0 262 13 2635 50 0 0 chr3 37054525 37054827 -190469751 + AluY SINE Alu 1 302 -9 296 140 20 0 chr3 37054905 37054955 -190469623 + MIR SINE MIR 91 141 -121 388 229 119 17 chr3 37055512 37055630 -190468948 - MIR3 SINE MIR -5 203 74 237 125 0 0 chr3 37056061 37056093 -190468485 - MLT1G1 LTR MaLR -319 276 245 234 302 112 26 chr3 37059365 37059481 -190465097 - L2 LINE L2 -225 3047 2922 2076 104 11 4 chr3 37059623 37059903 -190464675 + AluSq SINE Alu 1 282 -31 489 17 0 0 chr3 37059903 37059961 -190464617 + (CATA)n Simple_repeat Simple_repeat 1 58 0 464 268 33 58 chr3 37062791 37062965 -190461613 + MER69A DNA AcHobo 6 176 -1 1192 279 147 14 chr3 37062968 37063391 -190461187 + MER69 DNA AcHobo 89 567 -659 1284 222 84 23 chr3 37063442 37063870 -190460708 + MER69 DNA AcHobo 2073 2526 0 305 284 12 0 chr3 37066976 37067057 -190457521 - MER63 DNA MER1_type -2 1060 979 264 30 0 0 chr3 37067090 37067123 -190457455 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 2375 79 0 28 chr3 37067356 37067674 -190456904 + AluY SINE Alu 1 309 -2 453 288 187 14 chr3 37068520 37068739 -190455839 - MIR SINE MIR 0 262 6 30 45 0 0 chr3 37069107 37069151 -190455427 + AT_rich Low_complexity Low_complexity 1 44 0 872 223 9 28 chr3 37070155 37070366 -190454212 + MER3 DNA MER1_type 2 208 -1 728 309 18 9 chr3 37070400 37070617 -190453961 + MIR SINE MIR 41 259 -3 464 250 17 0 chr3 37070782 37070898 -190453680 - MER94 DNA DNA -1 133 16 1702 110 9 100 chr3 37071595 37071914 -190452664 + AluSq SINE Alu 1 290 -23 1374 120 0 29 chr3 37071987 37072196 -190452382 + AluSg/x SINE Alu 105 307 -5 393 261 232 19 chr3 37073376 37073587 -190450991 - MIR SINE MIR -6 256 1 1081 179 5 33 chr3 37074724 37074936 -190449642 + MER20 DNA MER1_type 2 207 -12 654 218 158 0 chr3 37075629 37075794 -190448784 + MIR SINE MIR 24 214 -48 279 0 0 0 chr3 37076467 37076498 -190448080 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2247 112 7 0 chr3 37077819 37078124 -190446454 - AluSc SINE Alu -2 307 1 1872 172 0 13 chr3 37078245 37078559 -190446019 - AluJb SINE Alu 0 312 3 316 347 75 19 chr3 37079100 37079367 -190445211 - L2 LINE L2 -15 3298 2964 503 315 61 20 chr3 37080026 37080223 -190444355 - MIR SINE MIR -16 246 42 894 188 32 28 chr3 37080401 37080619 -190443959 + MER20 DNA MER1_type 1 219 0 222 118 0 0 chr3 37081329 37081363 -190443215 + (CAG)n Simple_repeat Simple_repeat 1 34 0 2151 51 3 111 chr3 37082190 37082522 -190442056 + AluY SINE Alu 1 296 -15 24 0 0 0 chr3 37082945 37082969 -190441609 + AT_rich Low_complexity Low_complexity 1 24 0 491 241 52 0 chr3 37083268 37083384 -190441194 - MER5A DNA MER1_type -31 158 37 301 280 10 10 chr3 37083505 37083605 -190440973 + MIR3 SINE MIR 82 181 -27 523 218 29 45 chr3 37083608 37083788 -190440790 - MER63A DNA MER1_type 0 210 32 320 414 6 6 chr3 37084206 37084368 -190440210 + MIR3 SINE MIR 32 193 -15 306 0 0 0 chr3 37084562 37084596 -190439982 + (TC)n Simple_repeat Simple_repeat 1 34 0 342 340 61 30 chr3 37085478 37085852 -190438726 - L2 LINE L2 -247 3066 2682 1262 40 0 0 chr3 37086143 37086293 -190438285 - L1PA3 LINE L1 -2 6153 6004 415 295 184 0 chr3 37087920 37088127 -190436451 - MIR SINE MIR -5 257 13 537 256 75 19 chr3 37088168 37088328 -190436250 - MER5B DNA MER1_type -4 174 6 190 294 20 0 chr3 37089829 37089880 -190434698 - L2 LINE L2 0 3272 3221 950 286 37 80 chr3 37090194 37090705 -190433873 - L2 LINE L2 -640 2674 2186 625 311 44 13 chr3 37090720 37090945 -190433633 - MIR SINE MIR -27 235 4 668 286 73 36 chr3 37090947 37091276 -190433302 - L2 LINE L2 -1135 2179 1839 216 0 0 0 chr3 37091322 37091346 -190433232 + (T)n Simple_repeat Simple_repeat 1 24 0 223 239 33 33 chr3 37091406 37091498 -190433080 + (TCTCTG)n Simple_repeat Simple_repeat 4 95 0 482 225 28 14 chr3 37092443 37092585 -190431993 - L1ME2 LINE L1 -1 6333 6022 217 267 81 29 chr3 37092675 37092811 -190431767 + MIR SINE MIR 23 262 0 2208 108 7 0 chr3 37093440 37093746 -190430832 - AluSq SINE Alu -5 308 1 216 388 0 0 chr3 37093959 37094044 -190430534 + MIR SINE MIR 18 102 -160 461 247 10 0 chr3 37094910 37095007 -190429571 - MER81 DNA DNA 0 114 17 343 242 51 101 chr3 37095014 37095192 -190429386 - MIR SINE MIR -57 205 37 240 324 20 20 chr3 37096516 37096618 -190427960 + MIR SINE MIR 31 132 -76 344 71 18 0 chr3 37097149 37097205 -190427373 + (CA)n Simple_repeat Simple_repeat 2 58 0 275 338 48 35 chr3 37097208 37097353 -190427225 + L2 LINE L2 3123 3269 -3 2879 192 11 73 chr3 37101645 37102339 -190422239 + MER82 DNA MER2_type 2 652 -1 26 30 0 0 chr3 37102431 37102464 -190422114 + AT_rich Low_complexity Low_complexity 1 33 0 424 356 42 93 chr3 37103380 37103696 -190420882 + L2 LINE L2 2437 2767 -505 1914 152 3 0 chr3 37103696 37103986 -190420592 + AluSx SINE Alu 1 291 -21 424 356 42 93 chr3 37103986 37104500 -190420078 + L2 LINE L2 2767 3237 -35 1153 216 107 28 chr3 37104644 37104963 -190419615 + MER2 DNA MER2_type 2 345 0 197 339 89 16 chr3 37105822 37105946 -190418632 - L2 LINE L2 -1 3271 3139 440 327 216 7 chr3 37106112 37106418 -190418160 - L3 LINE CR1 -4 1573 1204 595 203 86 63 chr3 37106486 37106708 -190417870 - MER112 DNA MER1_type -6 254 28 318 274 95 0 chr3 37106741 37106836 -190417742 - MER5A DNA MER1_type -85 104 1 236 210 25 12 chr3 37106933 37107014 -190417564 - Charlie7 DNA MER1_type -2474 138 57 287 198 33 66 chr3 37107947 37108004 -190416574 + MIR SINE MIR 67 121 -141 2231 77 3 68 chr3 37108004 37108330 -190416248 - AluY SINE Alu -6 305 1 287 198 33 66 chr3 37108330 37108363 -190416215 + MIR SINE MIR 121 154 -108 22 35 0 0 chr3 37111652 37111681 -190412897 + AT_rich Low_complexity Low_complexity 1 29 0 497 226 28 0 chr3 37113754 37113860 -190410718 - MER5A DNA MER1_type -77 112 4 365 340 11 54 chr3 37115570 37115849 -190408729 + L1ME3A LINE L1 5618 5884 -286 27 49 0 0 chr3 37116111 37116152 -190408426 + AT_rich Low_complexity Low_complexity 1 41 0 284 206 56 0 chr3 37116159 37116266 -190408312 + (TA)n Simple_repeat Simple_repeat 2 114 0 265 222 43 31 chr3 37116206 37116368 -190408210 + (TATAA)n Simple_repeat Simple_repeat 2 165 0 * 1174 208 4 17 chr3 37117122 37117353 -190407225 + AluJo SINE Alu 2 229 -83 585 217 59 13 chr3 37118705 37118857 -190405721 - L1ME3A LINE L1 -8 6162 6004 1885 122 7 11 chr3 37118858 37119129 -190405449 - AluSx SINE Alu -12 300 31 4521 123 106 91 chr3 37119132 37120723 -190403855 - pTR5 LTR ERV1 0 2438 750 229 150 125 0 chr3 37120723 37120763 -190403815 - AluSx SINE Alu -256 46 2 940 229 146 3 chr3 37120765 37121053 -190403525 - L1ME3A LINE L1 -159 6011 5683 2049 151 0 3 chr3 37121901 37122213 -190402365 - AluSx SINE Alu -1 311 1 24 0 0 0 chr3 37123406 37123430 -190401148 + AT_rich Low_complexity Low_complexity 1 24 0 270 0 0 0 chr3 37124117 37124147 -190400431 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 224 98 0 24 chr3 37124197 37124238 -190400340 + (CAATA)n Simple_repeat Simple_repeat 3 42 0 1959 160 0 10 chr3 37124418 37124731 -190399847 - AluJb SINE Alu -1 311 2 2024 190 6 3 chr3 37124875 37125239 -190399339 - MLT1A1 LTR MaLR 0 365 1 260 346 109 19 chr3 37125725 37125936 -190398642 + MIR SINE MIR 20 249 -13 257 119 30 30 chr3 37125939 37126006 -190398572 + (TATATG)n Simple_repeat Simple_repeat 5 71 0 27 0 0 0 chr3 37126184 37126211 -190398367 + AT_rich Low_complexity Low_complexity 1 27 0 380 361 87 0 chr3 37126403 37126611 -190397967 + Charlie8 DNA MER1_type 40 265 -2152 261 339 32 26 chr3 37126671 37126860 -190397718 - L2 LINE L2 -940 2374 2185 404 229 57 10 chr3 37126868 37127008 -190397570 + MER5A DNA MER1_type 1 188 -1 877 278 8 4 chr3 37127649 37127883 -190396695 + MIR SINE MIR 21 255 -7 371 373 93 10 chr3 37128555 37128748 -190395830 - MIR SINE MIR -34 228 20 2377 97 0 0 chr3 37129360 37129668 -190394910 - AluSg SINE Alu -2 308 1 1893 46 8 17 chr3 37129758 37129999 -190394579 + AluY SINE Alu 73 311 0 726 219 62 6 chr3 37130081 37130259 -190394319 + MER5A DNA MER1_type 1 188 -1 1908 173 68 0 chr3 37130900 37131265 -190393313 - MLT1B LTR MaLR 0 390 1 344 248 74 8 chr3 37134274 37134395 -190390183 - MIR SINE MIR 0 262 134 31 76 0 0 chr3 37134402 37134468 -190390110 + AT_rich Low_complexity Low_complexity 1 66 0 198 400 0 0 chr3 37134525 37134595 -190389983 - MIR SINE MIR -191 71 2 347 256 23 47 chr3 37134668 37134797 -190389781 - MIR SINE MIR -116 146 21 2350 99 0 0 chr3 37136426 37136728 -190387850 + AluSg SINE Alu 2 303 -7 63 0 0 0 chr3 37136792 37136855 -190387723 + AT_rich Low_complexity Low_complexity 1 63 0 257 258 67 11 chr3 37138012 37138101 -190386477 + Charlie7 DNA MER1_type 8 101 -2511 267 258 0 15 chr3 37138243 37138309 -190386269 + GA-rich Low_complexity Low_complexity 2 66 0 2435 74 0 0 chr3 37138374 37138672 -190385906 + AluY SINE Alu 1 298 -13 914 273 98 43 chr3 37139039 37139457 -190385121 - L2 LINE L2 -2514 800 360 551 234 94 57 chr3 37139961 37140153 -190384425 + MIR SINE MIR 14 212 -50 21 0 0 0 chr3 37140241 37140262 -190384316 + AT_rich Low_complexity Low_complexity 1 21 0 2124 105 23 13 chr3 37142072 37142378 -190382200 - AluSx SINE Alu -1 311 3 255 103 0 0 chr3 37142858 37142897 -190381681 + (A)n Simple_repeat Simple_repeat 1 39 0 2029 117 45 0 chr3 37143678 37143968 -190380610 - AluY SINE Alu -8 303 1 2494 83 0 0 chr3 37144646 37144958 -190379620 - AluSx SINE Alu 0 312 1 234 232 18 0 chr3 37145280 37145336 -190379242 + MIR SINE MIR 90 146 -62 198 0 0 0 chr3 37146047 37146069 -190378509 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 226 155 28 0 chr3 37147076 37147140 -190377438 + (TA)n Simple_repeat Simple_repeat 2 70 -4 2019 148 45 0 chr3 37147140 37147472 -190377106 + MER7A DNA MER2_type 2 346 0 226 155 28 0 chr3 37147472 37147478 -190377100 + (TA)n Simple_repeat Simple_repeat 70 74 0 225 0 0 0 chr3 37147502 37147527 -190377051 + (TG)n Simple_repeat Simple_repeat 2 26 0 276 268 14 0 chr3 37148790 37148861 -190375717 + Charlie8 DNA MER1_type 2341 2412 -5 204 304 29 0 chr3 37148909 37148978 -190375600 - MIR SINE MIR -106 156 86 33 43 0 0 chr3 37151113 37151160 -190373418 + AT_rich Low_complexity Low_complexity 1 47 0 10562 174 30 11 chr3 37151168 37152171 -190372407 - L1M2 LINE L1 -549 5742 4760 213 65 0 0 chr3 37152171 37152202 -190372376 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 10562 174 30 11 chr3 37152202 37153830 -190370748 - L1M2 LINE L1 -1531 4760 3057 232 305 188 8 chr3 37154251 37154379 -190370199 + L2 LINE L2 3117 3267 -5 22 0 0 0 chr3 37154395 37154417 -190370161 + AT_rich Low_complexity Low_complexity 1 22 0 6728 68 17 0 chr3 37154865 37155782 -190368796 - L1PA7 LINE L1 0 6154 5226 228 337 105 0 chr3 37155797 37155883 -190368695 + MER91C DNA MER1_type 46 140 0 396 344 160 5 chr3 37156005 37156217 -190368361 - MIR SINE MIR 0 262 18 186 294 98 33 chr3 37156497 37156589 -190367989 + L2 LINE L2 3174 3271 -1 1197 155 33 69 chr3 37157168 37157413 -190367165 - MER46A DNA MER2_type 0 236 1 2027 132 7 3 chr3 37157673 37157976 -190366602 + AluSg SINE Alu 1 304 -6 231 271 0 17 chr3 37160670 37160729 -190363849 + L2 LINE L2 3188 3245 -27 316 139 0 28 chr3 37161284 37161356 -190363222 + (TA)n Simple_repeat Simple_repeat 2 71 0 230 183 0 17 chr3 37161364 37161424 -190363154 - L1MCa LINE L1 -4362 2064 2006 190 137 0 39 chr3 37161432 37161483 -190363095 + (TA)n Simple_repeat Simple_repeat 2 50 0 521 295 128 13 chr3 37161506 37161740 -190362838 - MIR SINE MIR 0 262 2 192 411 6 25 chr3 37161793 37161956 -190362622 - L2 LINE L2 -209 3063 2904 232 374 64 28 chr3 37162646 37163004 -190361574 - L2 LINE L2 -692 2622 2252 574 176 50 0 chr3 37163106 37163225 -190361353 - AluJb SINE Alu 0 312 188 617 193 0 0 chr3 37163265 37163374 -190361204 - FLAM_C SINE Alu -34 109 1 1669 183 7 7 chr3 37163587 37163888 -190360690 + AluJb SINE Alu 1 301 -11 333 0 0 0 chr3 37163928 37163965 -190360613 + (TG)n Simple_repeat Simple_repeat 2 38 0 2360 86 0 3 chr3 37163976 37164279 -190360299 - AluY SINE Alu -9 302 1 212 294 0 44 chr3 37164761 37164829 -190359749 - L2 LINE L2 0 3272 3208 239 253 132 0 chr3 37165775 37165866 -190358712 + L1ME LINE L1 5547 5649 -472 796 134 37 43 chr3 37166555 37166742 -190357836 - MER53 DNA DNA -2 187 2 1219 197 58 7 chr3 37166792 37167087 -190357491 + MER33 DNA MER1_type 15 324 0 527 203 98 130 chr3 37167575 37167891 -190356687 + L2 LINE L2 2946 3251 -62 234 317 48 10 chr3 37168078 37168182 -190356396 - L2 LINE L2 -22 3291 3184 717 283 85 0 chr3 37168302 37168525 -190356053 - MIR SINE MIR -16 246 5 684 283 102 76 chr3 37168703 37168847 -190355731 - LTR33A LTR ERVL -6 517 378 2163 116 0 3 chr3 37168847 37169150 -190355428 - AluSx SINE Alu -10 302 1 684 283 102 76 chr3 37169150 37169468 -190355110 - LTR33A LTR ERVL -145 378 43 739 280 62 4 chr3 37169632 37169857 -190354721 - MIR SINE MIR -23 239 2 227 209 58 81 chr3 37169871 37169957 -190354621 + L2 LINE L2 3184 3267 -5 1616 189 0 26 chr3 37170381 37170694 -190353884 - AluJo SINE Alu -7 305 1 2091 119 0 49 chr3 37171072 37171400 -190353178 - AluSx SINE Alu 0 312 1 1300 197 33 33 chr3 37171428 37171727 -190352851 + AluJo SINE Alu 1 299 -13 21 36 0 0 chr3 37171923 37171951 -190352627 + AT_rich Low_complexity Low_complexity 1 28 0 386 260 175 19 chr3 37172739 37172893 -190351685 + MER5A DNA MER1_type 9 186 -3 2713 35 0 3 chr3 37172895 37173207 -190351371 + AluY SINE Alu 1 311 0 307 246 169 8 chr3 37173343 37173473 -190351105 - L3 LINE CR1 -214 1363 1213 223 259 12 25 chr3 37173477 37173558 -190351020 + CT-rich Low_complexity Low_complexity 2 81 0 261 0 0 0 chr3 37173838 37173867 -190350711 + (A)n Simple_repeat Simple_repeat 1 29 0 1135 36 0 0 chr3 37174383 37174520 -190350058 - L1PA5 LINE L1 -83 6071 5935 470 48 0 0 chr3 37174521 37174584 -190349994 + L1PA6 LINE L1 6090 6152 -2 23 0 0 0 chr3 37174584 37174607 -190349971 + AT_rich Low_complexity Low_complexity 1 23 0 2214 125 0 0 chr3 37174765 37175069 -190349509 - AluSx SINE Alu -8 304 1 2067 114 0 34 chr3 37175398 37175695 -190348883 - AluSq SINE Alu -21 292 6 21 36 0 0 chr3 37176247 37176275 -190348303 + AT_rich Low_complexity Low_complexity 1 28 0 181 291 81 12 chr3 37176297 37176383 -190348195 + L3b LINE CR1 1300 1391 -192 2156 98 0 39 chr3 37177237 37177543 -190347035 + AluSg SINE Alu 2 295 -15 509 254 188 0 chr3 37177847 37177985 -190346593 + MER5A DNA MER1_type 20 183 -6 198 184 0 82 chr3 37178691 37178740 -190345838 + L2 LINE L2 3216 3260 -12 354 45 0 0 chr3 37178894 37178938 -190345640 + (TA)n Simple_repeat Simple_repeat 2 45 0 1030 180 23 46 chr3 37179174 37179391 -190345187 + AluJo SINE Alu 77 288 -24 1726 186 0 14 chr3 37179852 37180148 -190344430 + AluJo SINE Alu 1 292 -20 1919 138 0 7 chr3 37180151 37180453 -190344125 + AluSg SINE Alu 1 300 0 279 0 0 0 chr3 37182367 37182398 -190342180 + (T)n Simple_repeat Simple_repeat 1 31 0 22 0 0 0 chr3 37183761 37183783 -190340795 + AT_rich Low_complexity Low_complexity 1 22 0 2302 87 3 0 chr3 37184199 37184509 -190340069 + AluY SINE Alu 1 311 0 241 246 104 60 chr3 37185457 37185591 -190338987 + MIR SINE MIR 75 214 -48 250 365 70 40 chr3 37186515 37186715 -190337863 - L3b LINE CR1 -84 1499 1294 24 32 0 0 chr3 37186960 37186991 -190337587 + AT_rich Low_complexity Low_complexity 1 31 0 437 352 33 5 chr3 37187175 37187388 -190337190 - MIR SINE MIR -5 257 39 1446 303 83 37 chr3 37187820 37188834 -190335744 + L2 LINE L2 2200 3308 -5 2112 117 3 3 chr3 37189018 37189317 -190335261 - AluSx SINE Alu -13 299 1 2021 139 0 3 chr3 37190083 37190386 -190334192 + AluSx SINE Alu 1 302 -10 455 216 34 0 chr3 37191447 37191535 -190333043 - MER58A DNA MER1_type -15 92 2 604 343 29 27 chr3 37191544 37191920 -190332658 + L1MC4a LINE L1 5533 5909 -1899 405 0 0 0 chr3 37192765 37192810 -190331768 + (TG)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr3 37192834 37192855 -190331723 + AT_rich Low_complexity Low_complexity 1 21 0 550 230 25 50 chr3 37192861 37193022 -190331556 - MIR SINE MIR -66 196 40 1406 197 47 0 chr3 37193644 37193898 -190330680 - AluJo SINE Alu -23 289 24 22 0 0 0 chr3 37194216 37194238 -190330340 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr3 37194320 37194348 -190330230 + AT_rich Low_complexity Low_complexity 1 28 0 1692 127 70 14 chr3 37194464 37194748 -190329830 - AluSx SINE Alu -6 306 7 1331 195 32 22 chr3 37194809 37195086 -190329492 + AluJo SINE Alu 3 282 -30 194 0 39 0 chr3 37195090 37195116 -190329462 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 26 82 0 0 chr3 37195148 37195209 -190329369 + AT_rich Low_complexity Low_complexity 1 61 0 207 0 0 0 chr3 37195716 37195739 -190328839 + (T)n Simple_repeat Simple_repeat 1 23 0 2185 122 0 0 chr3 37196054 37196349 -190328229 - AluSx SINE Alu -10 302 8 759 113 50 35 chr3 37196970 37197111 -190327467 - MER53 DNA DNA 0 189 47 258 214 43 51 chr3 37197166 37197283 -190327295 + (TATAA)n Simple_repeat Simple_repeat 2 117 0 469 207 33 0 chr3 37197300 37197421 -190327157 - MER53 DNA DNA -57 132 8 494 223 61 14 chr3 37197450 37197598 -190326980 - MLT1J2 LTR MaLR -229 221 67 462 270 50 25 chr3 37199591 37199750 -190324828 + MIR SINE MIR 52 214 -48 811 256 83 45 chr3 37199906 37200219 -190324359 - LTR16A LTR ERVL -6 444 120 264 313 47 0 chr3 37200839 37200989 -190323589 - L1ME LINE L1 -240 5881 5725 205 340 20 65 chr3 37201218 37201371 -190323207 - L2 LINE L2 -184 3088 2943 245 174 0 0 chr3 37201792 37201838 -190322740 - L2 LINE L2 0 3313 3268 2490 66 0 0 chr3 37202978 37203280 -190321298 + AluY SINE Alu 1 302 -9 466 346 47 45 chr3 37203389 37203791 -190320787 + LTR16C LTR ERVL 74 476 -15 288 286 100 0 chr3 37205232 37205302 -190319276 - L2 LINE L2 -1 3312 3236 282 288 159 0 chr3 37205384 37205516 -190319062 + MER5A DNA MER1_type 35 187 -2 * 623 218 32 0 chr3 37205408 37205532 -190319046 - MER5A DNA MER1_type -61 128 1 232 237 178 15 chr3 37205754 37205889 -190318689 + L1ME4a LINE L1 5965 6121 0 1167 92 0 0 chr3 37206045 37206197 -190318381 + AluSg/x SINE Alu 159 310 0 242 71 0 24 chr3 37206388 37206430 -190318148 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr3 37206907 37206928 -190317650 + AT_rich Low_complexity Low_complexity 1 21 0 5525 106 30 35 chr3 37207396 37208081 -190316497 - L1PA13 LINE L1 -3 6160 5474 369 43 0 0 chr3 37208081 37208128 -190316450 + (TTG)n Simple_repeat Simple_repeat 1 47 0 2228 97 0 0 chr3 37208128 37208407 -190316171 - AluSg SINE Alu -31 279 1 5525 106 30 35 chr3 37208407 37208648 -190315930 - L1PA13 LINE L1 -687 5476 5237 577 314 56 53 chr3 37208842 37209145 -190315433 - MER102b DNA MER1_type -31 310 7 204 260 0 0 chr3 37210049 37210099 -190314479 - L2 LINE L2 -1 3312 3263 223 293 0 0 chr3 37210252 37210310 -190314268 - L2 LINE L2 -4 3309 3252 1408 214 69 0 chr3 37210401 37210737 -190313841 + AluJo SINE Alu 3 358 0 2020 117 10 36 chr3 37210851 37211160 -190313418 + AluSq SINE Alu 1 301 -12 181 282 154 9 chr3 37211166 37211276 -190313302 + MIR SINE MIR 110 235 -27 25 31 0 0 chr3 37212589 37212621 -190311957 + AT_rich Low_complexity Low_complexity 1 32 0 247 340 39 31 chr3 37212726 37213021 -190311557 - L2 LINE L2 0 3313 2932 180 0 0 0 chr3 37213291 37213311 -190311267 + (A)n Simple_repeat Simple_repeat 1 20 0 720 260 92 24 chr3 37213318 37213568 -190311010 + L1ME1 LINE L1 5891 6157 -9 216 341 65 7 chr3 37215005 37215143 -190309435 + L3 LINE CR1 1232 1377 -200 308 349 125 31 chr3 37215172 37215364 -190309214 - MIR SINE MIR -39 223 14 363 367 25 13 chr3 37215395 37215553 -190309025 + L3 LINE CR1 1411 1570 -7 463 298 155 0 chr3 37215598 37215759 -190308819 - MER5A DNA MER1_type 0 189 4 22 0 0 0 chr3 37216706 37216728 -190307850 + AT_rich Low_complexity Low_complexity 1 22 0 19982 167 39 9 chr3 37216841 37219774 -190304804 - L1MA2 LINE L1 0 7723 4877 2027 141 13 0 chr3 37219774 37220073 -190304505 - AluSx SINE Alu -9 303 1 19982 167 39 9 chr3 37220073 37221485 -190303093 - L1MA2 LINE L1 -2846 4877 3508 315 0 0 0 chr3 37221485 37221520 -190303058 + (CA)n Simple_repeat Simple_repeat 2 36 0 19982 167 39 9 chr3 37221520 37224653 -190299925 - L1MA2 LINE L1 -4215 3508 23 2880 10 0 0 chr3 37225444 37225757 -190298821 - AluYb8 SINE Alu -5 313 1 275 0 29 0 chr3 37227332 37227367 -190297211 + (TAA)n Simple_repeat Simple_repeat 1 36 0 423 0 0 0 chr3 37228806 37228853 -190295725 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 250 291 23 35 chr3 37230141 37230227 -190294351 - L2 LINE L2 -1 3271 3187 282 298 64 64 chr3 37230241 37230429 -190294149 + L2 LINE L2 1485 1672 -1642 223 298 0 0 chr3 37230437 37230494 -190294084 + L2 LINE L2 3251 3307 -6 182 279 0 0 chr3 37230508 37230551 -190294027 - MER5B DNA MER1_type 0 178 136 1302 284 107 63 chr3 37230585 37231604 -190292974 + L2 LINE L2 1686 2749 -565 277 338 147 0 chr3 37231688 37231824 -190292754 + L2 LINE L2 3117 3272 0 296 252 18 45 chr3 37232109 37232220 -190292358 + MIR SINE MIR 53 160 -102 306 250 0 0 chr3 37233270 37233334 -190291244 - L2 LINE L2 0 3313 3250 189 0 0 0 chr3 37233884 37233905 -190290673 + (T)n Simple_repeat Simple_repeat 1 21 0 270 0 0 0 chr3 37233905 37233935 -190290643 + (TG)n Simple_repeat Simple_repeat 1 30 0 499 250 149 0 chr3 37234582 37234796 -190289782 + L1MD3 LINE L1 6069 7984 -11 274 246 0 0 chr3 37235859 37235924 -190288654 + CT-rich Low_complexity Low_complexity 2 66 0 662 283 126 9 chr3 37236804 37237034 -190287544 + MIR SINE MIR 3 259 -3 21 36 0 0 chr3 37237117 37237145 -190287433 + AT_rich Low_complexity Low_complexity 1 28 0 209 325 26 0 chr3 37237151 37237228 -190287350 - L2 LINE L2 -6 3307 3229 333 320 20 85 chr3 37237505 37237752 -190286826 - MLT1J LTR MaLR -173 338 108 222 37 0 0 chr3 37238844 37238871 -190285707 + (CA)n Simple_repeat Simple_repeat 2 28 0 7025 41 0 9 chr3 37238957 37239828 -190284750 + L1PA5 LINE L1 5286 6148 -6 611 287 69 84 chr3 37240395 37240729 -190283849 - L2 LINE L2 -11 3302 2974 2260 103 0 6 chr3 37241773 37242085 -190282493 + AluSg SINE Alu 1 310 0 411 236 194 18 chr3 37243146 37243311 -190281267 - MIR SINE MIR -49 213 20 215 246 15 31 chr3 37243426 37243491 -190281087 + L2 LINE L2 3250 3313 0 1402 123 22 9 chr3 37245832 37246059 -190278519 + L1MA1 LINE L1 6073 6302 0 1768 212 92 10 chr3 37246868 37247260 -190277318 + MSTB1 LTR MaLR 9 432 0 200 200 46 0 chr3 37247790 37247855 -190276723 + (TA)n Simple_repeat Simple_repeat 2 69 0 311 306 86 92 chr3 37249510 37249846 -190274732 + L2 LINE L2 2975 3308 -5 258 349 121 0 chr3 37249845 37249977 -190274601 - MIR SINE MIR -86 176 29 * 499 218 18 18 chr3 37250093 37250203 -190274375 + MER20 DNA MER1_type 1 110 -109 188 396 44 11 chr3 37250351 37250442 -190274136 - L2 LINE L2 -78 3194 3101 767 202 11 71 chr3 37250601 37250784 -190273794 + MER20 DNA MER1_type 47 218 -1 22 0 0 0 chr3 37253626 37253648 -190270930 + AT_rich Low_complexity Low_complexity 1 22 0 1923 189 17 3 chr3 37253895 37254255 -190270323 - MLT1A1 LTR MaLR 0 365 1 308 168 46 130 chr3 37254619 37254750 -190269828 - L1MC5 LINE L1 -60 7901 7782 31 26 0 0 chr3 37254759 37254797 -190269781 + AT_rich Low_complexity Low_complexity 1 38 0 227 250 0 0 chr3 37254807 37254871 -190269707 - L1MC5 LINE L1 -197 7764 7701 702 187 249 13 chr3 37255663 37255888 -190268690 - MER5C DNA MER1_type -3 321 44 277 301 0 0 chr3 37256298 37256371 -190268207 + L2 LINE L2 3238 3310 -3 543 287 116 6 chr3 37258593 37258757 -190265821 + MIR SINE MIR 3 184 -78 340 343 102 6 chr3 37258924 37259268 -190265310 - L1ME4a LINE L1 -212 5909 5533 346 276 49 0 chr3 37259680 37259782 -190264796 + MER45 DNA AcHobo 1 117 -61 1593 121 25 0 chr3 37259789 37260029 -190264549 - L1M2 LINE L1 -577 5714 5469 240 197 76 30 chr3 37260044 37260110 -190264468 + MER45 DNA AcHobo 1513 1581 0 5714 133 40 6 chr3 37260267 37261214 -190263364 + L1MA8 LINE L1 5259 6237 -54 23 0 0 0 chr3 37261214 37261237 -190263341 + AT_rich Low_complexity Low_complexity 1 23 0 294 311 59 25 chr3 37261652 37261771 -190262807 - MIR3 SINE MIR -37 171 49 236 296 154 47 chr3 37261955 37262124 -190262454 + MIR SINE MIR 34 220 -42 234 0 0 0 chr3 37262127 37262153 -190262425 + (CA)n Simple_repeat Simple_repeat 1 26 0 412 256 0 0 chr3 37262275 37262353 -190262225 + FLAM_C SINE Alu 26 103 -40 421 271 34 62 chr3 37262805 37262863 -190261715 - L1ME1 LINE L1 -5 6161 6103 2166 71 7 3 chr3 37262863 37263168 -190261410 + AluSq SINE Alu 3 308 0 421 271 34 62 chr3 37263168 37263285 -190261293 - L1ME1 LINE L1 -63 6103 5990 663 215 48 16 chr3 37264005 37264191 -190260387 + L1ME3 LINE L1 5880 6071 -91 266 224 104 0 chr3 37264369 37264436 -190260142 + MIR3 SINE MIR 123 196 -12 306 278 130 17 chr3 37264458 37264573 -190260005 - L2 LINE L2 0 3313 3186 1951 127 3 38 chr3 37264869 37265185 -190259393 + AluSq SINE Alu 1 305 -8 1147 84 19 35 chr3 37265750 37265941 -190258637 + L1PA8A LINE L1 5938 6154 -1 184 313 16 0 chr3 37266232 37266296 -190258282 + MIR SINE MIR 86 150 -112 21 0 0 0 chr3 37266810 37266831 -190257747 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 37267213 37267248 -190257330 + AT_rich Low_complexity Low_complexity 1 35 0 236 318 94 0 chr3 37268672 37268757 -190255821 + MIR3 SINE MIR 104 196 -12 379 267 92 51 chr3 37268781 37268976 -190255602 - L2 LINE L2 0 3313 3111 667 227 41 72 chr3 37269349 37269496 -190255082 + MIR SINE MIR 9 150 -112 1972 75 50 4 chr3 37269496 37269774 -190254804 + AluY SINE Alu 4 294 -17 667 227 41 72 chr3 37269774 37269820 -190254758 + MIR SINE MIR 150 196 -66 2386 54 7 7 chr3 37269967 37270265 -190254313 + AluY SINE Alu 1 298 -13 1380 169 93 35 chr3 37271545 37271889 -190252689 + THE1B LTR MaLR 1 364 0 1870 134 0 14 chr3 37272069 37272352 -190252226 + AluSq SINE Alu 2 280 -33 366 23 0 0 chr3 37272354 37272397 -190252181 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 254 226 98 59 chr3 37272830 37272932 -190251646 + MIR SINE MIR 62 167 -95 358 277 94 96 chr3 37273404 37273595 -190250983 + MIR SINE MIR 10 220 -42 321 242 44 11 chr3 37273665 37273756 -190250822 + MIR SINE MIR 99 192 -70 205 345 57 68 chr3 37273915 37273993 -190250585 + L2 LINE L2 2915 2992 -280 778 155 170 46 chr3 37273993 37274187 -190250391 - MER20 DNA MER1_type 0 219 2 205 345 57 68 chr3 37274187 37274404 -190250174 + L2 LINE L2 2992 3207 -65 233 280 0 0 chr3 37274432 37274482 -190250096 + polypurine Low_complexity Low_complexity 1 50 0 975 243 93 29 chr3 37275320 37275695 -190248883 - HsTC2 DNA Tc2 -39 1859 1285 440 223 149 8 chr3 37275699 37275820 -190248758 - HsTC2 DNA Tc2 -1757 141 4 379 298 32 32 chr3 37275884 37276008 -190248570 + MIR SINE MIR 17 140 -122 255 200 33 33 chr3 37277105 37277165 -190247413 + L2 LINE L2 3206 3265 -7 377 331 27 27 chr3 37277290 37277438 -190247140 + MER5A DNA MER1_type 42 189 0 181 298 35 18 chr3 37280456 37280513 -190244065 - MIR SINE MIR -135 73 16 1160 237 113 4 chr3 37281143 37281417 -190243161 + LTR16C LTR ERVL 188 491 0 1957 273 43 20 chr3 37281756 37282360 -190242218 + L2 LINE L2 2164 2781 -533 315 0 0 0 chr3 37282695 37282730 -190241848 + (TG)n Simple_repeat Simple_repeat 2 36 0 274 359 0 47 chr3 37285947 37286075 -190238503 + MER5A DNA MER1_type 40 161 -28 285 51 0 0 chr3 37286242 37286281 -190238297 + (GA)n Simple_repeat Simple_repeat 2 40 0 345 24 0 0 chr3 37286912 37286954 -190237624 + (CA)n Simple_repeat Simple_repeat 2 43 0 776 253 16 5 chr3 37287457 37287651 -190236927 + MIR SINE MIR 32 227 -35 658 269 118 38 chr3 37287686 37288211 -190236367 - L1ME4a LINE L1 -28 6093 5527 243 214 24 24 chr3 37289051 37289135 -190235443 + MER113 DNA MER1_type? 127 210 -311 655 262 29 24 chr3 37292720 37292926 -190231652 - MER3 DNA MER1_type 0 209 3 2275 105 0 3 chr3 37293629 37293935 -190230643 - AluSx SINE Alu -7 305 1 207 0 0 0 chr3 37294062 37294085 -190230493 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 26 50 0 0 chr3 37294837 37294877 -190229701 + AT_rich Low_complexity Low_complexity 1 40 0 1969 146 0 16 chr3 37294920 37295229 -190229349 - AluJb SINE Alu -8 304 1 1732 181 0 28 chr3 37296928 37297249 -190227329 - AluJb SINE Alu 0 312 1 24 67 0 0 chr3 37298509 37298554 -190226024 + AT_rich Low_complexity Low_complexity 1 45 0 364 290 48 0 chr3 37299842 37299966 -190224612 + MIR SINE MIR 57 186 -76 186 43 0 0 chr3 37300344 37300367 -190224211 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 263 291 0 23 chr3 37301076 37301162 -190223416 - Charlie8 DNA MER1_type -2195 222 139 468 0 0 0 chr3 37301178 37301230 -190223348 + (TG)n Simple_repeat Simple_repeat 2 53 0 1665 185 10 27 chr3 37301256 37301554 -190223024 - AluSx SINE Alu -19 293 1 229 177 40 153 chr3 37301717 37301841 -190222737 + MIR SINE MIR 103 212 -50 5959 162 66 8 chr3 37302061 37303222 -190221356 + Tigger3b DNA MER2_type 2 1230 -1 615 261 151 7 chr3 37303571 37303843 -190220735 - MLT1J1 LTR MaLR -133 313 3 2840 60 0 0 chr3 37304242 37304592 -190219986 - L1P2 LINE L1 -422 5732 5383 551 73 0 0 chr3 37304589 37304671 -190219907 + L1P LINE L1 4625 4706 -1440 * 220 261 146 39 chr3 37304723 37304853 -190219725 + MIR SINE MIR 118 261 -1 373 185 74 9 chr3 37304942 37305050 -190219528 - MER53 DNA DNA -52 137 23 1269 218 42 18 chr3 37306879 37307163 -190217415 + AluJo SINE Alu 1 291 -21 2221 129 3 0 chr3 37309049 37309358 -190215220 - AluSg SINE Alu 0 310 1 319 233 0 0 chr3 37309526 37309612 -190214966 + (TA)n Simple_repeat Simple_repeat 2 87 0 780 178 0 15 chr3 37310275 37310410 -190214168 + FLAM_C SINE Alu 1 133 0 25 31 0 0 chr3 37310678 37310710 -190213868 + AT_rich Low_complexity Low_complexity 1 32 0 1714 155 79 0 chr3 37310753 37311031 -190213547 + AluJo SINE Alu 1 300 -12 706 95 0 0 chr3 37312535 37312630 -190211948 - AluSg/x SINE Alu -12 300 206 1846 110 0 0 chr3 37312630 37312867 -190211711 - AluSq SINE Alu -76 237 1 24 0 0 0 chr3 37313397 37313421 -190211157 + AT_rich Low_complexity Low_complexity 1 24 0 350 306 76 25 chr3 37314079 37314236 -190210342 + MIR SINE MIR 49 213 -49 476 343 75 8 chr3 37314843 37315082 -190209496 + MIR SINE MIR 4 258 -4 564 264 132 0 chr3 37315135 37315302 -190209276 - MER5A DNA MER1_type 0 189 1 2106 90 17 13 chr3 37315622 37315953 -190208625 - AluSc SINE Alu 0 309 1 4087 181 18 9 chr3 37316043 37316831 -190207747 - L1MB3 LINE L1 -2 6417 5623 570 213 20 0 chr3 37316826 37316976 -190207602 - L1MB3 LINE L1 -1656 4726 4574 * 1148 195 102 8 chr3 37316969 37317430 -190207148 - L1MB3 LINE L1 -3579 2803 2302 * 3526 199 31 20 chr3 37317426 37318138 -190206440 - L1MB3 LINE L1 -5646 738 19 180 362 81 27 chr3 37319199 37319384 -190205194 - MIR SINE MIR -5 257 63 23 54 0 0 chr3 37319674 37319711 -190204867 + AT_rich Low_complexity Low_complexity 1 37 0 206 118 0 0 chr3 37319889 37319923 -190204655 + (TTGG)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr3 37320587 37320610 -190203968 + AT_rich Low_complexity Low_complexity 1 23 0 331 302 35 17 chr3 37320646 37320762 -190203816 + L2 LINE L2 3196 3313 0 2129 118 0 0 chr3 37321044 37321331 -190203247 + AluSc SINE Alu 1 287 -22 1016 295 113 27 chr3 37322752 37323278 -190201300 + L2 LINE L2 2740 3313 0 26 0 0 0 chr3 37323590 37323616 -190200962 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr3 37323865 37323903 -190200675 + AT_rich Low_complexity Low_complexity 1 38 0 796 238 32 11 chr3 37324172 37324357 -190200221 + MER5A DNA MER1_type 1 189 0 474 275 87 5 chr3 37324932 37325139 -190199439 - LTR33A LTR ERVL 0 523 300 284 318 116 0 chr3 37325382 37325511 -190199067 - LTR50 LTR ERVL -629 166 23 881 271 149 15 chr3 37325777 37326172 -190198406 + LTR16A1 LTR ERVL 8 455 -2 246 216 0 95 chr3 37326224 37326298 -190198280 - MIR SINE MIR -117 145 79 543 151 85 0 chr3 37327001 37327107 -190197471 + MLT1C LTR MaLR 1 115 -352 38591 80 10 11 chr3 37327126 37333269 -190191309 + L1PA5 LINE L1 11 6148 -6 393 279 83 49 chr3 37333278 37333686 -190190892 - HAL1b LINE L1 -480 868 447 2521 128 59 2 chr3 37333703 37334108 -190190470 - MSTA LTR MaLR 0 428 1 394 274 34 34 chr3 37334672 37334789 -190189789 + MIR SINE MIR 16 132 -76 384 339 63 42 chr3 37335140 37335379 -190189199 + L3b LINE CR1 1105 1348 -235 782 233 12 12 chr3 37335878 37336050 -190188528 + MER5A DNA MER1_type 18 189 0 182 37 37 0 chr3 37336606 37336633 -190187945 + (TA)n Simple_repeat Simple_repeat 1 28 0 434 258 17 8 chr3 37337695 37337815 -190186763 - L1ME2 LINE L1 -19 6145 6025 5220 97 4 5 chr3 37338173 37338914 -190185664 - L1PA11 LINE L1 0 6174 5435 1795 125 3 35 chr3 37338981 37339291 -190185287 - AluSc SINE Alu 0 301 1 322 226 113 61 chr3 37339312 37339427 -190185151 + MER117 DNA MER1_type 36 156 -41 186 71 0 0 chr3 37340424 37340452 -190184126 + (CA)n Simple_repeat Simple_repeat 2 29 0 378 42 0 0 chr3 37341618 37341666 -190182912 + (CA)n Simple_repeat Simple_repeat 2 49 0 2303 53 0 11 chr3 37341881 37342199 -190182379 - AluY SINE Alu 0 315 1 25 0 0 0 chr3 37342984 37343009 -190181569 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr3 37343075 37343099 -190181479 + AT_rich Low_complexity Low_complexity 1 24 0 480 238 74 64 chr3 37344398 37344600 -190179978 + MIR SINE MIR 47 250 -12 673 243 7 7 chr3 37344985 37345129 -190179449 - LTR16C LTR ERVL -135 356 213 22 0 0 0 chr3 37345166 37345188 -190179390 + AT_rich Low_complexity Low_complexity 1 22 0 1957 176 8 3 chr3 37345776 37346135 -190178443 - MER46B DNA MER2_type 0 236 1 391 297 71 0 chr3 37347105 37347287 -190177291 - L1MC4a LINE L1 -1878 5930 5736 1813 156 17 3 chr3 37347382 37347670 -190176908 - AluSx SINE Alu -17 295 4 199 205 51 0 chr3 37348068 37348107 -190176471 - MER5A DNA MER1_type -70 119 79 211 390 8 8 chr3 37349152 37349270 -190175308 - L2 LINE L2 -467 2847 2730 1952 68 0 0 chr3 37349292 37349528 -190175050 + AluSq SINE Alu 72 307 -6 4412 116 127 103 chr3 37349630 37351154 -190173424 + pTR5 LTR ERV1 743 2438 0 242 363 94 33 chr3 37351269 37351481 -190173097 - MIR SINE MIR -37 225 1 3163 151 25 6 chr3 37351992 37352509 -190172069 + MER1A DNA MER1_type 1 527 0 532 194 194 0 chr3 37352732 37352876 -190171702 + MIR SINE MIR 91 262 0 1198 262 87 18 chr3 37357036 37357437 -190167141 + LTR16A LTR ERVL 21 449 -1 427 313 103 9 chr3 37358561 37358794 -190165784 - MIR SINE MIR 0 262 8 360 264 36 55 chr3 37359149 37359220 -190165358 - L2 LINE L2 0 3313 3243 1608 134 131 3 chr3 37359220 37359518 -190165060 - MER44D DNA MER2_type 0 609 4 360 264 36 55 chr3 37359518 37359556 -190165022 - L2 LINE L2 -70 3243 3206 448 285 44 32 chr3 37359742 37359900 -190164678 - MIR3 SINE MIR -5 203 44 2297 190 20 93 chr3 37360399 37360531 -190164047 + MLT2B2 LTR ERVL 1 141 -374 1817 192 0 0 chr3 37360531 37360838 -190163740 - AluJb SINE Alu -4 308 2 2297 190 20 93 chr3 37360838 37361252 -190163326 + MLT2B2 LTR ERVL 141 507 -8 26 0 0 0 chr3 37361334 37361360 -190163218 + AT_rich Low_complexity Low_complexity 1 26 0 2020 165 0 0 chr3 37361999 37362308 -190162270 + AluJb SINE Alu 1 309 -3 448 205 0 0 chr3 37362320 37362403 -190162175 - L2 LINE L2 -9 3304 3222 * 760 266 142 63 chr3 37362374 37362817 -190161761 - L2 LINE L2 -687 2627 2150 303 93 0 0 chr3 37362965 37363008 -190161570 + (CA)n Simple_repeat Simple_repeat 1 43 0 220 315 148 13 chr3 37363452 37363601 -190160977 - MIR SINE MIR -20 242 74 424 304 99 16 chr3 37364282 37364473 -190160105 + L1MC/D LINE L1 5458 5664 -2144 361 286 32 7 chr3 37364620 37364774 -190159804 - L1ME4a LINE L1 -3 6118 5961 619 306 121 0 chr3 37365269 37365475 -190159103 + MIR SINE MIR 18 248 -14 847 298 94 22 chr3 37366561 37366923 -190157655 - LTR16C LTR ERVL -14 477 90 467 269 228 0 chr3 37367271 37367416 -190157162 - MER5A DNA MER1_type -3 186 9 206 229 200 29 chr3 37367512 37367582 -190156996 + MIR SINE MIR 30 111 -97 857 327 77 46 chr3 37367811 37368425 -190156153 + L2 LINE L2 2313 2945 -369 255 31 0 0 chr3 37368923 37368955 -190155623 + (TG)n Simple_repeat Simple_repeat 1 32 0 403 208 13 13 chr3 37369721 37369823 -190154755 - MER20 DNA MER1_type -115 104 3 2949 244 68 22 chr3 37370439 37371191 -190153387 - L1MC4 LINE L1 -6 8036 7225 2308 103 3 3 chr3 37371191 37371502 -190153076 - AluSq SINE Alu -2 311 1 2949 244 68 22 chr3 37371502 37371751 -190152827 - L1MC4 LINE L1 -817 7225 6989 361 307 52 0 chr3 37372576 37372729 -190151849 - MIR SINE MIR -3 259 99 207 316 62 57 chr3 37373039 37373232 -190151346 + L2 LINE L2 3120 3313 0 15161 96 13 6 chr3 37373545 37376472 -190148106 + L1PA8 LINE L1 3093 6031 -141 372 45 0 0 chr3 37377240 37377284 -190147294 - MLT2C1 LTR ERVL 0 397 354 351 243 0 28 chr3 37377367 37377544 -190147034 + CT-rich Low_complexity Low_complexity 2 173 0 1221 275 84 23 chr3 37377574 37378003 -190146575 - MLT2B1 LTR ERVL -65 455 1 26 0 0 0 chr3 37378211 37378237 -190146341 + AT_rich Low_complexity Low_complexity 1 26 0 1886 143 18 6 chr3 37378800 37379136 -190145442 - L1M2 LINE L1 -594 5706 5367 1541 163 54 33 chr3 37379148 37379479 -190145099 - L1M2 LINE L1 -901 5245 4908 210 37 0 0 chr3 37379495 37379522 -190145056 + (CA)n Simple_repeat Simple_repeat 2 28 0 2914 145 8 14 chr3 37379523 37380028 -190144550 + L1MA5 LINE L1 5795 6296 -4 783 193 114 90 chr3 37380132 37380422 -190144156 + MER5C DNA MER1_type 22 318 -6 337 268 49 41 chr3 37381275 37381398 -190143180 + MIR3 SINE MIR 55 178 -30 23 33 0 0 chr3 37381411 37381441 -190143137 + AT_rich Low_complexity Low_complexity 1 30 0 1129 224 84 41 chr3 37382194 37382466 -190142112 - MER113 DNA MER1_type? -88 433 135 2366 52 10 0 chr3 37382466 37382754 -190141824 - AluY SINE Alu -20 291 1 1129 224 84 41 chr3 37382754 37382896 -190141682 - MER113 DNA MER1_type? -386 135 1 272 285 50 69 chr3 37382901 37383083 -190141495 + MIR SINE MIR 17 188 -74 216 67 0 0 chr3 37383187 37383217 -190141361 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 215 194 0 0 chr3 37383274 37383310 -190141268 + (TGG)n Simple_repeat Simple_repeat 1 36 0 366 91 0 0 chr3 37383311 37383366 -190141212 + (TG)n Simple_repeat Simple_repeat 1 55 0 909 168 22 32 chr3 37384120 37384305 -190140273 - MER5A DNA MER1_type -6 183 1 571 301 169 0 chr3 37384318 37384531 -190140047 + MIR SINE MIR 2 250 -12 2571 52 0 10 chr3 37384651 37384961 -190139617 + AluY SINE Alu 1 307 -4 22 0 0 0 chr3 37385454 37385476 -190139102 + AT_rich Low_complexity Low_complexity 1 22 0 2215 109 0 3 chr3 37386239 37386542 -190138036 + AluSg SINE Alu 1 302 -8 2119 168 26 5 chr3 37387149 37387531 -190137047 - MLT1B LTR MaLR 0 390 1 210 365 75 0 chr3 37387762 37387869 -190136709 + L2 LINE L2 2650 2764 -550 479 239 179 0 chr3 37388770 37388904 -190135674 - MER105 DNA DNA -3 201 44 727 211 39 61 chr3 37388904 37389084 -190135494 + MER5A DNA MER1_type 3 178 -11 743 195 5 124 chr3 37389109 37389227 -190135351 - MER5A DNA MER1_type -26 163 73 2227 50 0 0 chr3 37389227 37389504 -190135074 - L1PA4 LINE L1 -3 6152 5876 743 195 5 124 chr3 37389504 37389570 -190135008 - MER5A DNA MER1_type -116 73 1 240 324 86 29 chr3 37389677 37389782 -190134796 + L2 LINE L2 3161 3271 -1 2209 110 0 7 chr3 37389981 37390281 -190134297 + AluSg SINE Alu 1 298 -12 22 0 0 0 chr3 37392330 37392352 -190132226 + AT_rich Low_complexity Low_complexity 1 22 0 233 316 44 35 chr3 37392714 37392828 -190131750 + MIR SINE MIR 15 129 -133 189 0 0 0 chr3 37392831 37392852 -190131726 + (TCTA)n Simple_repeat Simple_repeat 1 21 0 576 65 0 0 chr3 37392854 37392931 -190131647 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 939 140 14 0 chr3 37393063 37393206 -190131372 - MER61D LTR ERV1 0 501 357 275 105 0 0 chr3 37393255 37393293 -190131285 - MER61B LTR ERV1 -286 139 102 * 708 239 6 17 chr3 37393270 37393450 -190131128 - LTR28 LTR ERV1 -842 178 1 251 310 99 78 chr3 37393451 37393796 -190130782 - L2 LINE L2 -124 3189 2838 1996 172 40 12 chr3 37393799 37394223 -190130355 - LTR23 LTR ERV1 0 437 2 9732 167 47 39 chr3 37394224 37396028 -190128550 - LTR23-int LTR ERV1 -6 5699 4409 1531 86 5 0 chr3 37396028 37396238 -190128340 - L1PA13 LINE L1 -4 6159 5949 9732 167 47 39 chr3 37396238 37397068 -190127510 - LTR23-int LTR ERV1 -1296 4409 3587 1691 171 84 47 chr3 37397063 37397205 -190127373 - LTR23-int LTR ERV1 -3442 1681 1546 * 2062 202 124 63 chr3 37397205 37397982 -190126596 - LTR1B LTR ERV1 0 826 3 1691 171 84 47 chr3 37397982 37398290 -190126288 - LTR23-int LTR ERV1 -3577 1546 1214 623 286 103 13 chr3 37398290 37398524 -190126054 - MER34C LTR ERV1 -171 414 160 2058 228 45 51 chr3 37398526 37399155 -190125423 - LTR23-int LTR ERV1 -3695 2636 751 770 241 24 20 chr3 37399189 37399442 -190125136 - LTR23-int LTR ERV1 -4396 727 474 2090 117 17 0 chr3 37399442 37399732 -190124846 - AluSx SINE Alu -17 295 1 727 225 20 81 chr3 37399742 37400099 -190124479 - LTR23-int LTR ERV1 -4643 480 1 2178 122 77 21 chr3 37400099 37400510 -190124068 - LTR23 LTR ERV1 0 467 1 686 301 58 58 chr3 37400903 37401371 -190123207 - LTR33 LTR ERVL -8 513 46 2149 243 70 73 chr3 37401610 37401799 -190122779 - MER21B LTR ERV1 -62 801 613 2452 126 3 8 chr3 37401799 37402165 -190122413 - THE1B LTR MaLR 0 364 1 2149 243 70 73 chr3 37402165 37402779 -190121799 - MER21B LTR ERV1 -250 613 1 537 288 8 0 chr3 37402818 37402950 -190121628 - Charlie8 DNA MER1_type -2263 154 22 733 252 13 13 chr3 37402986 37403145 -190121433 + MER5B DNA MER1_type 1 159 -19 1853 214 70 13 chr3 37403148 37403605 -190120973 - L1MD3 LINE L1 -1 7994 7512 292 306 74 9 chr3 37403785 37403893 -190120685 + MIR SINE MIR 38 152 -56 342 80 0 0 chr3 37405732 37405782 -190118796 + (CA)n Simple_repeat Simple_repeat 2 51 0 612 292 41 0 chr3 37406517 37406688 -190117890 - MER45A DNA AcHobo 0 178 1 270 309 103 29 chr3 37407180 37407355 -190117223 - Tigger8 DNA MER2_type -19 647 460 312 340 104 19 chr3 37407381 37407649 -190116929 - Tigger8 DNA MER2_type -313 353 63 299 266 149 32 chr3 37407900 37408054 -190116524 + MIR SINE MIR 2 173 -89 227 246 70 0 chr3 37408059 37408116 -190116462 - L2 LINE L2 0 3272 3212 524 261 8 0 chr3 37408807 37408937 -190115641 + MER5C DNA MER1_type 1 131 -193 292 238 60 0 chr3 37408953 37409037 -190115541 + MER5C DNA MER1_type 232 320 -4 30 0 0 0 chr3 37410013 37410043 -190114535 + AT_rich Low_complexity Low_complexity 1 30 0 2155 127 73 15 chr3 37411222 37411562 -190113016 - THE1B LTR MaLR 0 364 5 314 263 51 34 chr3 37414267 37414385 -190110193 + LTR16C LTR ERVL 319 438 -53 29 28 0 0 chr3 37415345 37415381 -190109197 + AT_rich Low_complexity Low_complexity 1 36 0 220 331 90 60 chr3 37416787 37416920 -190107658 + L2 LINE L2 3134 3270 -2 1204 234 62 83 chr3 37416933 37417099 -190107479 + MLT1D LTR MaLR 1 169 -336 2010 149 136 5 chr3 37417099 37417474 -190107104 - MSTA LTR MaLR 0 428 5 1204 234 62 83 chr3 37417474 37417823 -190106755 + MLT1D LTR MaLR 169 505 0 1384 179 110 11 chr3 37417940 37418253 -190106325 - MER31A LTR ERV1 0 485 8 22 0 0 0 chr3 37418830 37418852 -190105726 + AT_rich Low_complexity Low_complexity 1 22 0 857 333 35 15 chr3 37419122 37419527 -190105051 + LTR16C LTR ERVL 76 488 -3 1883 200 94 2 chr3 37420052 37420507 -190104071 + Charlie1b DNA MER1_type 11 507 -16 237 98 0 0 chr3 37420716 37420757 -190103821 + (T)n Simple_repeat Simple_repeat 1 41 0 300 91 0 0 chr3 37421346 37421390 -190103188 + (TG)n Simple_repeat Simple_repeat 1 44 0 183 42 0 0 chr3 37421389 37421413 -190103165 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 22 35 0 0 chr3 37421899 37421928 -190102650 + AT_rich Low_complexity Low_complexity 1 29 0 648 0 0 0 chr3 37422287 37422359 -190102219 + (TTTC)n Simple_repeat Simple_repeat 2 73 0 474 145 0 0 chr3 37422361 37422430 -190102148 - AluS SINE Alu -19 293 225 24 32 0 0 chr3 37422614 37422645 -190101933 + AT_rich Low_complexity Low_complexity 1 31 0 23 68 0 0 chr3 37422867 37422911 -190101667 + AT_rich Low_complexity Low_complexity 1 44 0 203 309 62 10 chr3 37423138 37423235 -190101343 + MIR SINE MIR 31 132 -130 478 33 0 0 chr3 37423245 37423305 -190101273 - L1PA4 LINE L1 -87 6068 6009 617 85 0 0 chr3 37423305 37423385 -190101193 + L1PA5 LINE L1 6068 6149 -5 2086 118 0 53 chr3 37424582 37424904 -190099674 - AluSx SINE Alu -7 305 1 22 0 0 0 chr3 37425810 37425832 -190098746 + AT_rich Low_complexity Low_complexity 1 22 0 1047 237 5 9 chr3 37426628 37426852 -190097726 - MER58A DNA MER1_type 0 224 2 21 0 0 0 chr3 37426873 37426894 -190097684 + AT_rich Low_complexity Low_complexity 1 21 0 2034 147 20 0 chr3 37427312 37427642 -190096936 + AluSx SINE Alu 1 336 0 27 0 0 0 chr3 37428097 37428124 -190096454 + AT_rich Low_complexity Low_complexity 1 27 0 458 19 0 0 chr3 37428263 37428315 -190096263 + (A)n Simple_repeat Simple_repeat 1 52 0 514 173 8 90 chr3 37428869 37429002 -190095576 + FLAM_A SINE Alu 2 123 -10 1609 227 80 107 chr3 37431171 37431603 -190092975 - L1ME3A LINE L1 -9 6161 5756 770 246 55 10 chr3 37431603 37431802 -190092776 + MER3 DNA MER1_type 2 209 0 1609 227 80 107 chr3 37431802 37432089 -190092489 - L1ME3A LINE L1 -414 5756 5463 1737 169 35 56 chr3 37432156 37432529 -190092049 + MLT1A1 LTR MaLR 1 365 0 2143 111 14 3 chr3 37433111 37433408 -190091170 - AluSq SINE Alu -12 301 2 2696 90 3 6 chr3 37433453 37433818 -190090760 + THE1B LTR MaLR 1 364 0 232 274 113 75 chr3 37433844 37434030 -190090548 + MIR SINE MIR 53 245 -17 977 226 65 5 chr3 37434578 37434795 -190089783 - MLT1D LTR MaLR 0 505 276 180 316 112 59 chr3 37435088 37435240 -190089338 - MIR3 SINE MIR -7 201 42 21 0 0 0 chr3 37436912 37436933 -190087645 + AT_rich Low_complexity Low_complexity 1 21 0 259 329 0 0 chr3 37438751 37438836 -190085742 + MIR SINE MIR 133 217 -45 3156 247 48 40 chr3 37439014 37442310 -190082268 + L1M3c LINE L1 11 3052 -3158 298 284 95 17 chr3 37443144 37443260 -190081318 - MIR SINE MIR -17 245 121 596 251 11 49 chr3 37443347 37443530 -190081048 + MIR SINE MIR 66 241 -21 237 159 0 0 chr3 37443974 37444018 -190080560 + (TA)n Simple_repeat Simple_repeat 1 44 0 23 0 0 0 chr3 37444395 37444418 -190080160 + AT_rich Low_complexity Low_complexity 1 23 0 222 91 0 0 chr3 37445646 37445679 -190078899 + (TTTTA)n Simple_repeat Simple_repeat 1 33 0 1138 54 16 1 chr3 37445679 37445860 -190078718 - L1PA4 LINE L1 -24 6131 5941 1095 251 43 10 chr3 37445876 37446175 -190078403 - L1ME1 LINE L1 -150 6016 5708 247 150 17 67 chr3 37446327 37446387 -190078191 + L1PB1 LINE L1 144 200 -6663 13243 170 56 39 chr3 37446387 37452536 -190072042 + L1PB1 LINE L1 634 6867 0 1746 124 0 4 chr3 37452699 37452957 -190071621 - AluSc SINE Alu -52 257 1 839 315 31 31 chr3 37452957 37453500 -190071078 - L1MC4a LINE L1 -1949 5859 5317 29 0 0 0 chr3 37453770 37453799 -190070779 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 37453850 37453873 -190070705 + AT_rich Low_complexity Low_complexity 1 23 0 222 37 0 0 chr3 37455551 37455578 -190069000 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 740 213 0 0 chr3 37456947 37457083 -190067495 + MIR SINE MIR 25 160 -102 2055 125 30 3 chr3 37457392 37457695 -190066883 + AluSx SINE Alu 1 311 -1 2161 183 44 2 chr3 37458228 37458637 -190065941 + MSTB LTR MaLR 1 426 0 2437 61 0 0 chr3 37458741 37459036 -190065542 + AluY SINE Alu 1 295 -16 407 270 124 27 chr3 37459862 37460047 -190064531 + L2 LINE L2 3111 3313 0 258 273 0 125 chr3 37460091 37460219 -190064359 + MIR3 SINE MIR 85 196 -12 970 166 11 6 chr3 37460445 37460620 -190063958 - Tigger1 DNA MER2_type -1 2417 2242 431 129 0 14 chr3 37460620 37460690 -190063888 - AluJ/FLAM SINE Alu -239 73 5 2965 118 5 2 chr3 37460695 37461143 -190063435 - Tigger1 DNA MER2_type -670 1748 1300 2171 107 0 7 chr3 37461143 37461442 -190063136 - AluSc SINE Alu -12 297 1 4090 121 22 5 chr3 37461443 37462082 -190062496 - Tigger1 DNA MER2_type -1286 1132 483 1809 186 25 8 chr3 37462326 37462681 -190061897 - Tigger1 DNA MER2_type -1932 486 126 799 186 21 4 chr3 37462681 37462918 -190061660 + GA-rich Low_complexity Low_complexity 1 241 0 234 91 0 0 chr3 37465602 37465635 -190058943 + (CA)n Simple_repeat Simple_repeat 1 33 0 2169 107 0 3 chr3 37465873 37466163 -190058415 - AluSx SINE Alu -9 303 15 235 327 50 0 chr3 37466716 37466817 -190057761 - MIR SINE MIR -70 192 87 197 282 26 0 chr3 37466851 37466890 -190057688 + MIR SINE MIR 36 75 -133 214 261 101 0 chr3 37467665 37467734 -190056844 - MIR3 SINE MIR -39 169 94 351 65 0 0 chr3 37468573 37468619 -190055959 + (TG)n Simple_repeat Simple_repeat 1 46 0 5409 155 41 1 chr3 37468746 37469696 -190054882 + Tigger3b DNA MER2_type 2 989 -242 227 245 47 38 chr3 37469934 37470040 -190054538 + L1MC/D LINE L1 5788 5894 -1914 470 250 35 9 chr3 37473749 37473865 -190050713 - L2 LINE L2 -3 3310 3192 28 0 0 0 chr3 37475273 37475301 -190049277 + AT_rich Low_complexity Low_complexity 1 28 0 321 338 8 0 chr3 37475387 37475520 -190049058 - L1ME LINE L1 -348 5773 5640 10922 30 0 0 chr3 37475715 37477018 -190047560 - L1P LINE L1 -1449 4697 3395 422 19 0 0 chr3 37477018 37477069 -190047509 + L1PA3 LINE L1 6100 6151 -4 215 211 0 0 chr3 37477695 37477733 -190046845 + MIR SINE MIR 1 38 -224 2577 57 3 12 chr3 37477828 37478164 -190046414 + L1PB2 LINE L1 5757 6089 -62 663 171 0 8 chr3 37478265 37478376 -190046202 + L1 LINE L1 3713 3823 -2318 1979 181 44 7 chr3 37478376 37478711 -190045867 + L1MA9 LINE L1 5883 6240 -72 189 0 0 0 chr3 37478711 37478732 -190045846 + (TA)n Simple_repeat Simple_repeat 2 22 0 1979 181 44 7 chr3 37478732 37478803 -190045775 + L1MA9 LINE L1 6240 6307 -5 454 79 26 0 chr3 37479561 37479637 -190044941 + (TA)n Simple_repeat Simple_repeat 2 79 0 1421 201 10 41 chr3 37479980 37480294 -190044284 + AluJb SINE Alu 6 309 -3 38 68 0 0 chr3 37481515 37481588 -190042990 + AT_rich Low_complexity Low_complexity 1 73 0 1597 213 50 39 chr3 37482088 37482605 -190041973 - Charlie1b DNA MER1_type 0 523 1 330 286 76 43 chr3 37482623 37483155 -190041423 - L1ME LINE L1 -299 5822 5268 182 133 0 0 chr3 37483532 37483562 -190041016 + L2 LINE L2 3284 3313 0 214 100 0 0 chr3 37484399 37484429 -190040149 + L2 LINE L2 3243 3272 0 1850 215 130 0 chr3 37484513 37484959 -190039619 + MLT1D LTR MaLR 2 505 0 1702 169 20 10 chr3 37485602 37485898 -190038680 + AluSx SINE Alu 1 299 -13 272 25 50 0 chr3 37486158 37486198 -190038380 + (TTTTG)n Simple_repeat Simple_repeat 3 44 0 235 339 47 8 chr3 37486610 37486737 -190037841 + MIR SINE MIR 70 201 -61 313 311 91 63 chr3 37486738 37487024 -190037554 - MLT1I LTR MaLR 0 409 116 234 236 18 0 chr3 37487089 37487144 -190037434 + MIR SINE MIR 198 253 -9 235 280 329 0 chr3 37487200 37487343 -190037235 + MIR SINE MIR 66 255 -7 761 319 149 42 chr3 37487523 37488431 -190036147 - L2 LINE L2 -2 3311 2309 2396 51 0 3 chr3 37489575 37489867 -190034711 - AluY SINE Alu -2 309 19 349 282 58 32 chr3 37490481 37490637 -190033941 + L1MC5 LINE L1 7754 7913 -48 24 0 0 0 chr3 37490645 37490669 -190033909 + AT_rich Low_complexity Low_complexity 1 24 0 351 0 0 0 chr3 37491100 37491139 -190033439 + (TG)n Simple_repeat Simple_repeat 2 40 0 2186 119 0 10 chr3 37491167 37491470 -190033108 + AluSg SINE Alu 5 304 -6 209 357 164 7 chr3 37492796 37492936 -190031642 + L2 LINE L2 2816 2977 -337 514 323 129 0 chr3 37492974 37493222 -190031356 + L2 LINE L2 3034 3313 0 318 293 108 45 chr3 37493314 37493536 -190031042 + MIR SINE MIR 26 261 -1 6120 100 10 6 chr3 37493740 37495258 -190029320 + L1PA13 LINE L1 4621 6161 -2 204 40 0 0 chr3 37495349 37495374 -190029204 + (T)n Simple_repeat Simple_repeat 1 25 0 2672 58 0 0 chr3 37495374 37495700 -190028878 - LTR17 LTR ERV1 -454 326 1 210 204 23 0 chr3 37497036 37497080 -190027498 - L2 LINE L2 -1 3312 3268 288 345 29 43 chr3 37498004 37498143 -190026435 + L2 LINE L2 3173 3309 -4 26 30 0 0 chr3 37498178 37498211 -190026367 + AT_rich Low_complexity Low_complexity 1 33 0 180 0 0 0 chr3 37499296 37499316 -190025262 + (CCCCCA)n Simple_repeat Simple_repeat 6 25 0 365 98 0 66 chr3 37499675 37499736 -190024842 - 5S rRNA rRNA -64 57 1 240 226 0 0 chr3 37501783 37501845 -190022733 + (CA)n Simple_repeat Simple_repeat 2 63 0 1746 78 25 0 chr3 37502793 37503035 -190021543 - AluY SINE Alu -5 306 59 589 209 139 47 chr3 37504091 37504263 -190020315 - MER5A DNA MER1_type 0 189 2 208 139 0 28 chr3 37504307 37504343 -190020235 + (CA)n Simple_repeat Simple_repeat 1 35 0 1105 139 0 37 chr3 37504622 37504809 -190019769 + AluSg/x SINE Alu 129 308 -2 1629 28 0 51 chr3 37505104 37505321 -190019257 + L1PA5 LINE L1 5949 6154 0 24 53 0 0 chr3 37505851 37505889 -190018689 + AT_rich Low_complexity Low_complexity 1 38 0 331 259 12 0 chr3 37506658 37506743 -190017835 - MIR SINE MIR -77 185 100 332 133 22 44 chr3 37506752 37506842 -190017736 + GA-rich Low_complexity Low_complexity 2 89 0 211 313 30 20 chr3 37506845 37506878 -190017700 - MIR SINE MIR -128 134 103 964 101 0 43 chr3 37506878 37507066 -190017512 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 211 313 30 20 chr3 37507066 37507131 -190017447 - MIR SINE MIR -159 103 35 504 285 64 12 chr3 37507806 37507978 -190016600 + MIR SINE MIR 48 228 -34 198 0 0 0 chr3 37508008 37508030 -190016548 + (A)n Simple_repeat Simple_repeat 1 22 0 591 234 19 5 chr3 37508081 37508242 -190016336 + L1MA10 LINE L1 6017 6334 0 415 208 115 118 chr3 37509408 37509696 -190014882 - MLT1H LTR MaLR -196 353 67 267 323 0 0 chr3 37511330 37511423 -190013155 + (TA)n Simple_repeat Simple_repeat 1 93 0 21 0 0 0 chr3 37513038 37513059 -190011519 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr3 37513312 37513336 -190011242 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 340 94 19 0 chr3 37514081 37514134 -190010444 - Charlie1 DNA MER1_type -1 2760 2707 687 279 23 30 chr3 37514148 37514410 -190010168 - Charlie1 DNA MER1_type -159 2602 2343 248 358 45 0 chr3 37514409 37514476 -190010102 - Charlie1 DNA MER1_type -2691 70 1 * 6349 183 12 5 chr3 37514691 37515880 -190008698 - L1P LINE L1 -1161 4985 3789 501 230 29 35 chr3 37517353 37517527 -190007051 - MER104 DNA Tc2 -7 173 1 250 259 0 0 chr3 37518389 37518447 -190006131 - L2 LINE L2 0 3313 3256 271 337 110 12 chr3 37519061 37519316 -190005262 - L2 LINE L2 -1030 2284 2005 1885 157 3 32 chr3 37519882 37520227 -190004351 - MER1B DNA MER1_type -2 335 1 1558 160 34 22 chr3 37520705 37520973 -190003605 + AluJo SINE Alu 17 287 -25 27 62 0 0 chr3 37521271 37521319 -190003259 + AT_rich Low_complexity Low_complexity 1 48 0 887 254 42 5 chr3 37523292 37523509 -190001069 - MIR SINE MIR -36 226 2 581 242 13 19 chr3 37524813 37524970 -189999608 - L1MD2 LINE L1 -13 6346 6191 703 235 30 18 chr3 37525212 37525378 -189999200 + MIR SINE MIR 40 207 -55 443 99 0 14 chr3 37526352 37526423 -189998155 + (TC)n Simple_repeat Simple_repeat 1 70 0 228 321 98 27 chr3 37527555 37527667 -189996911 - L2 LINE L2 -2 3270 3151 220 289 35 18 chr3 37528143 37528257 -189996321 + (CATATA)n Simple_repeat Simple_repeat 4 119 0 * 341 256 17 17 chr3 37528172 37528289 -189996289 + (TATG)n Simple_repeat Simple_repeat 3 119 0 283 202 81 81 chr3 37528308 37528407 -189996171 - L2 LINE L2 -40 3273 3175 327 337 82 5 chr3 37528483 37528679 -189995899 - L1MC4 LINE L1 -143 7899 7689 186 253 127 0 chr3 37528722 37528801 -189995777 - MIR SINE MIR -57 205 117 21 0 0 0 chr3 37529144 37529165 -189995413 + AT_rich Low_complexity Low_complexity 1 21 0 233 255 0 0 chr3 37529406 37529453 -189995125 - L2 LINE L2 -56 3216 3170 2139 131 24 29 chr3 37529722 37530096 -189994482 + THE1C LTR MaLR 1 372 -3 186 118 0 0 chr3 37530734 37530768 -189993810 + (TTATA)n Simple_repeat Simple_repeat 2 35 0 192 372 0 21 chr3 37531565 37531659 -189992919 + L2 LINE L2 2869 2960 -312 543 304 77 22 chr3 37531846 37532027 -189992551 + MIR SINE MIR 1 191 -71 21 57 0 0 chr3 37533308 37533343 -189991235 + AT_rich Low_complexity Low_complexity 1 35 0 1086 193 18 14 chr3 37534783 37535001 -189989577 - MER20 DNA MER1_type 0 219 1 411 78 0 0 chr3 37535248 37535312 -189989266 + (TATG)n Simple_repeat Simple_repeat 2 65 0 384 230 143 24 chr3 37536361 37536487 -189988091 - L2 LINE L2 0 3313 3173 521 228 74 37 chr3 37536490 37536652 -189987926 - MLT1A2 LTR MaLR 0 390 223 1318 174 19 0 chr3 37536658 37536893 -189987685 - AluJb SINE Alu 0 308 70 812 248 26 22 chr3 37536909 37537135 -189987443 - MLT1A2 LTR MaLR -147 227 1 23 0 0 0 chr3 37537135 37537158 -189987420 + AT_rich Low_complexity Low_complexity 1 23 0 395 325 87 33 chr3 37537163 37537555 -189987023 - L2 LINE L2 -167 3146 2729 346 205 50 56 chr3 37537703 37537727 -189986851 - L1MA10 LINE L1 -1 6333 6310 2233 238 79 2 chr3 37537727 37538346 -189986232 - L1ME2 LINE L1 -13 6151 5485 312 27 0 0 chr3 37541176 37541213 -189983365 + (TG)n Simple_repeat Simple_repeat 2 38 0 213 159 0 0 chr3 37542407 37542451 -189982127 + GA-rich Low_complexity Low_complexity 2 45 0 263 232 195 0 chr3 37543098 37543180 -189981398 + MIR SINE MIR 109 206 -56 203 175 25 0 chr3 37544058 37544098 -189980480 + (TG)n Simple_repeat Simple_repeat 2 42 0 473 250 97 0 chr3 37544572 37544748 -189979830 + MIR SINE MIR 70 262 0 379 294 113 72 chr3 37547349 37547496 -189977082 - L1ME2 LINE L1 -860 5286 5146 1041 219 18 5 chr3 37547496 37547715 -189976863 - MER58A DNA MER1_type 0 224 3 379 294 113 72 chr3 37547715 37548100 -189976478 - L1ME2 LINE L1 -1000 5146 4778 1265 143 65 0 chr3 37548100 37548316 -189976262 + MER30 DNA MER1_type 1 230 0 379 294 113 72 chr3 37548316 37548644 -189975934 - L1ME2 LINE L1 -1368 4778 4390 1135 243 62 14 chr3 37548645 37548957 -189975621 - MSTD LTR MaLR 0 396 101 25 0 0 0 chr3 37549008 37549033 -189975545 + AT_rich Low_complexity Low_complexity 1 25 0 25 75 0 0 chr3 37549052 37549105 -189975473 + AT_rich Low_complexity Low_complexity 1 53 0 248 281 148 31 chr3 37549429 37549557 -189975021 - L1MC4 LINE L1 -315 7727 7585 383 305 109 55 chr3 37549877 37550225 -189974353 - L1ME2 LINE L1 -2191 3955 3589 1694 191 0 10 chr3 37550409 37550713 -189973865 + AluJo SINE Alu 1 301 -11 197 326 54 33 chr3 37551175 37551267 -189973311 - L2 LINE L2 -12 3301 3208 235 189 0 19 chr3 37553171 37553224 -189971354 - LTR66 LTR ERVL -155 455 404 185 310 8 101 chr3 37553554 37553683 -189970895 - L2 LINE L2 -213 3059 2943 424 295 51 51 chr3 37554201 37554418 -189970160 + MARNA DNA Mariner 22 238 -348 400 184 9 18 chr3 37554454 37554568 -189970010 + (TGGA)n Simple_repeat Simple_repeat 3 115 0 475 278 72 28 chr3 37559529 37559709 -189964869 - L2 LINE L2 -4 3309 3122 364 328 22 45 chr3 37559857 37559991 -189964587 - L2 LINE L2 -5 3267 3137 358 215 38 0 chr3 37560489 37560568 -189964010 - MIR SINE MIR -68 140 59 1112 107 0 0 chr3 37563163 37563313 -189961265 + AluY SINE Alu 1 150 -161 2094 104 0 7 chr3 37563545 37563832 -189960746 - AluSq SINE Alu -26 287 3 2844 13 0 0 chr3 37564675 37564991 -189959587 + AluYb8 SINE Alu 1 316 -2 204 125 0 0 chr3 37566838 37566870 -189957708 + (T)n Simple_repeat Simple_repeat 1 32 0 2290 96 10 0 chr3 37567026 37567329 -189957249 + AluSp SINE Alu 2 307 -6 231 270 146 0 chr3 37568209 37568298 -189956280 - MER5A DNA MER1_type -84 105 4 23 0 0 0 chr3 37570644 37570667 -189953911 + AT_rich Low_complexity Low_complexity 1 23 0 231 173 0 0 chr3 37570667 37570719 -189953859 - L1MC4 LINE L1 -1339 6703 6652 24 53 0 0 chr3 37570772 37570810 -189953768 + AT_rich Low_complexity Low_complexity 1 38 0 22 35 0 0 chr3 37572044 37572073 -189952505 + AT_rich Low_complexity Low_complexity 1 29 0 2572 45 0 3 chr3 37572572 37572882 -189951696 - AluY SINE Alu -2 309 1 818 199 141 21 chr3 37572969 37573160 -189951418 - MER20 DNA MER1_type 0 219 6 26 30 0 0 chr3 37573187 37573220 -189951358 + AT_rich Low_complexity Low_complexity 1 33 0 254 320 41 74 chr3 37573459 37573581 -189950997 - L2 LINE L2 -2 3270 3153 243 0 0 0 chr3 37574102 37574129 -189950449 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 475 191 12 0 chr3 37574884 37574968 -189949610 - MER5A DNA MER1_type -6 183 99 21 0 0 0 chr3 37577863 37577884 -189946694 + AT_rich Low_complexity Low_complexity 1 21 0 226 347 80 34 chr3 37579573 37579749 -189944829 + MIR3 SINE MIR 19 202 -6 506 287 72 26 chr3 37581254 37581449 -189943129 + MIR SINE MIR 47 250 -12 395 286 42 30 chr3 37581629 37581797 -189942781 - Charlie8 DNA MER1_type -4 2413 2244 478 266 20 79 chr3 37581858 37582061 -189942517 - Charlie8 DNA MER1_type -2141 276 86 712 334 66 60 chr3 37582112 37582840 -189941738 + L2 LINE L2 2063 2794 -520 437 322 95 33 chr3 37584163 37584697 -189939881 + L1ME4a LINE L1 5291 5884 -237 1363 222 9 19 chr3 37584706 37585021 -189939557 + AluJo SINE Alu 1 312 0 289 264 85 16 chr3 37585082 37585211 -189939367 + L1ME4a LINE L1 5970 6107 -14 337 188 0 31 chr3 37587168 37587232 -189937346 + L2 LINE L2 3207 3268 -4 25 51 0 0 chr3 37587516 37587555 -189937023 + AT_rich Low_complexity Low_complexity 1 39 0 303 248 50 69 chr3 37588892 37588993 -189935585 - L2 LINE L2 -1 3271 3173 1360 118 0 47 chr3 37589262 37589541 -189935037 + L1PA4 LINE L1 5887 6152 -3 6859 65 10 3 chr3 37589556 37590674 -189933904 + L1PA7 LINE L1 5017 6154 0 242 35 35 69 chr3 37591386 37591444 -189933134 + (TTTTA)n Simple_repeat Simple_repeat 3 58 0 22 0 0 0 chr3 37592860 37592882 -189931696 + AT_rich Low_complexity Low_complexity 1 22 0 185 171 0 0 chr3 37593704 37593739 -189930839 - L2 LINE L2 -1 3312 3278 21 36 0 0 chr3 37594440 37594468 -189930110 + AT_rich Low_complexity Low_complexity 1 28 0 1173 235 0 0 chr3 37594861 37595078 -189929500 - MER58A DNA MER1_type -7 217 1 40 21 0 0 chr3 37595326 37595373 -189929205 + AT_rich Low_complexity Low_complexity 1 47 0 22 0 0 0 chr3 37597006 37597028 -189927550 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr3 37597417 37597445 -189927133 + AT_rich Low_complexity Low_complexity 1 28 0 1124 289 43 20 chr3 37598588 37599055 -189925523 - MER90 LTR ERV1 -7 607 94 281 250 0 62 chr3 37599232 37599312 -189925266 - MIR SINE MIR -13 249 175 196 349 57 53 chr3 37599763 37600027 -189924551 + L2 LINE L2 2139 2403 -911 500 330 124 56 chr3 37602289 37602960 -189921618 + L2 LINE L2 2584 3272 0 22 0 0 0 chr3 37603471 37603493 -189921085 + AT_rich Low_complexity Low_complexity 1 22 0 203 272 216 56 chr3 37604682 37604844 -189919734 + MIR SINE MIR 8 195 -67 697 170 15 102 chr3 37604927 37605133 -189919445 + MER5A DNA MER1_type 1 188 -1 2398 123 27 0 chr3 37605208 37605573 -189919005 - THE1C LTR MaLR 0 375 1 10565 113 31 3 chr3 37605573 37607110 -189917468 - THE1C-int LTR MaLR 0 1580 1 2512 123 11 11 chr3 37607110 37607485 -189917093 - THE1C LTR MaLR 0 375 1 477 95 82 0 chr3 37607571 37607718 -189916860 + (TA)n Simple_repeat Simple_repeat 1 159 0 693 209 25 18 chr3 37608837 37609000 -189915578 + MER5B DNA MER1_type 8 171 -7 1894 160 3 3 chr3 37609158 37609458 -189915120 + AluSx SINE Alu 1 300 -12 9306 176 14 49 chr3 37610337 37613087 -189911491 - L1PB1 LINE L1 -1 6866 4256 1741 107 0 4 chr3 37613087 37613321 -189911257 - AluSc SINE Alu -76 233 1 9306 176 14 49 chr3 37613321 37613885 -189910693 - L1PB1 LINE L1 -2611 4256 3674 268 242 33 52 chr3 37613886 37614039 -189910539 - L1PB1 LINE L1 -6105 758 609 1267 285 47 15 chr3 37614066 37614595 -189909983 - L1PB1 LINE L1 -6312 551 6 198 0 0 0 chr3 37617094 37617116 -189907462 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 234 91 0 0 chr3 37617353 37617386 -189907192 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 1354 325 117 24 chr3 37619373 37620132 -189904446 + L2 LINE L2 713 1542 -1772 826 240 77 40 chr3 37620154 37620504 -189904074 - L1ME3A LINE L1 0 6170 5808 33 43 0 0 chr3 37620504 37620551 -189904027 + AT_rich Low_complexity Low_complexity 1 47 0 193 194 50 0 chr3 37620555 37620715 -189903863 + (TA)n Simple_repeat Simple_repeat 1 168 0 24 0 0 0 chr3 37620726 37620750 -189903828 + AT_rich Low_complexity Low_complexity 1 24 0 221 158 58 0 chr3 37620756 37620876 -189903702 + (TA)n Simple_repeat Simple_repeat 1 127 0 1195 264 50 10 chr3 37620885 37621268 -189903310 - L1ME3A LINE L1 -399 5771 5374 356 161 65 21 chr3 37621311 37621404 -189903174 - L1MD1 LINE L1 0 6242 6146 995 251 79 30 chr3 37621404 37621874 -189902704 - L1ME3A LINE L1 -1342 4804 4312 21 0 0 0 chr3 37623034 37623055 -189901523 + AT_rich Low_complexity Low_complexity 1 21 0 1630 150 38 24 chr3 37624578 37624871 -189899707 + AluJo SINE Alu 1 297 -15 246 62 0 0 chr3 37624884 37624916 -189899662 + (CAA)n Simple_repeat Simple_repeat 2 33 0 31284 111 19 51 chr3 37625186 37631539 -189893039 - L1PA7 LINE L1 -11 6143 1 1894 168 0 16 chr3 37632386 37632702 -189891876 + AluSx SINE Alu 1 311 -1 365 255 113 9 chr3 37633455 37633561 -189891017 - L2 LINE L2 -2 3311 3195 395 214 0 0 chr3 37634296 37634366 -189890212 + MER5A DNA MER1_type 4 73 -116 603 182 0 66 chr3 37634367 37634488 -189890090 + FLAM_A SINE Alu 1 113 -29 298 276 229 0 chr3 37634523 37634628 -189889950 + MER5A DNA MER1_type 61 189 0 704 237 29 0 chr3 37634636 37634809 -189889769 - MER5B DNA MER1_type 0 178 1 210 37 0 0 chr3 37636344 37636371 -189888207 + (A)n Simple_repeat Simple_repeat 1 27 0 833 259 156 24 chr3 37637162 37637533 -189887045 - MLT1H LTR MaLR 0 549 130 202 250 40 66 chr3 37637660 37637736 -189886842 + MIR SINE MIR 117 190 -72 1270 198 116 74 chr3 37638081 37638192 -189886386 - MER31B LTR ERV1 0 485 380 2289 48 0 52 chr3 37638192 37638501 -189886077 + AluY SINE Alu 1 293 -18 1270 198 116 74 chr3 37638501 37638880 -189885698 - MER31B LTR ERV1 -105 380 1 1520 229 22 102 chr3 37639300 37639799 -189884779 + MLT2B1 LTR ERVL 2 460 -60 43240 39 28 2 chr3 37639805 37645735 -189878843 + L1PA4 LINE L1 1 6074 -81 299 312 98 34 chr3 37696620 37696825 -189827753 + MLT1J2 LTR MaLR 2 219 -231 433 241 86 52 chr3 37697679 37697908 -189826670 + L1MCa LINE L1 17 564 -5858 860 207 79 20 chr3 37697926 37698129 -189826449 + LTR32 LTR ERVL 15 229 -242 387 335 53 16 chr3 37699013 37699201 -189825377 + MIR SINE MIR 65 259 -3 186 43 0 0 chr3 37699840 37699863 -189824715 + (CA)n Simple_repeat Simple_repeat 2 24 0 440 333 42 0 chr3 37700294 37700414 -189824164 - MER91A DNA MER1_type -71 125 1 366 276 71 67 chr3 37701644 37701898 -189822680 - L1ME3A LINE L1 -1 6169 5915 1362 165 37 0 chr3 37702148 37702404 -189822174 - AluJb SINE Alu 0 321 58 1941 153 3 3 chr3 37702935 37703230 -189821348 + AluSx SINE Alu 1 295 -17 207 0 0 0 chr3 37703230 37703253 -189821325 + (TA)n Simple_repeat Simple_repeat 1 23 0 45 0 0 0 chr3 37703253 37703298 -189821280 + AT_rich Low_complexity Low_complexity 1 45 0 323 255 0 43 chr3 37703308 37703402 -189821176 - L1MC4 LINE L1 -1339 6703 6614 198 236 0 0 chr3 37703403 37703458 -189821120 + (TA)n Simple_repeat Simple_repeat 1 55 0 272 291 24 31 chr3 37703601 37703728 -189820850 - L1MCc LINE L1 -6019 404 279 410 280 66 45 chr3 37703998 37704284 -189820294 + L1ME LINE L1 4288 4579 -1567 2280 69 0 29 chr3 37704592 37704898 -189819680 + AluY SINE Alu 1 297 -14 24 0 0 0 chr3 37705118 37705142 -189819436 + AT_rich Low_complexity Low_complexity 1 24 0 631 293 186 17 chr3 37705342 37705697 -189818881 + L1ME LINE L1 5389 5803 -318 385 328 75 36 chr3 37705702 37706010 -189818568 - MER102b DNA MER1_type 0 341 22 289 323 40 40 chr3 37706143 37706242 -189818336 + L2 LINE L2 3171 3269 -3 431 275 5 76 chr3 37706383 37706594 -189817984 - L2 LINE L2 0 3313 3118 1834 283 21 8 chr3 37706606 37707139 -189817439 - MER74B LTR ERVL -10 612 73 824 261 8 69 chr3 37707152 37707530 -189817048 - L2 LINE L2 -190 3123 2770 612 313 65 53 chr3 37707569 37708083 -189816495 + L1M4 LINE L1 3791 4310 -1836 484 310 73 57 chr3 37708202 37708570 -189816008 + L1M4 LINE L1 4525 4898 -1248 1602 174 43 46 chr3 37708575 37708948 -189815630 - THE1C LTR MaLR -3 372 1 367 311 81 48 chr3 37708955 37709164 -189815414 + L1M4 LINE L1 4918 5133 -1013 1788 201 37 3 chr3 37709623 37709971 -189814607 + MLT1A1 LTR MaLR 6 365 0 2028 42 118 4 chr3 37710004 37710266 -189814312 + AluY SINE Alu 1 292 -19 180 0 0 0 chr3 37710958 37710978 -189813600 + (TA)n Simple_repeat Simple_repeat 2 21 0 21 71 0 0 chr3 37712729 37712771 -189811807 + AT_rich Low_complexity Low_complexity 1 42 0 240 159 45 0 chr3 37714780 37714844 -189809734 + AluYb8 SINE Alu 242 307 0 25 0 0 0 chr3 37716976 37717001 -189807577 + AT_rich Low_complexity Low_complexity 1 25 0 577 225 42 28 chr3 37718081 37718223 -189806355 + MIR SINE MIR 118 261 -1 211 242 41 0 chr3 37718810 37718872 -189805706 - MIR SINE MIR -67 141 88 234 0 0 0 chr3 37719910 37719936 -189804642 + (CAAT)n Simple_repeat Simple_repeat 3 28 0 1830 127 0 57 chr3 37720110 37720441 -189804137 + L1PB1 LINE L1 5801 6112 -39 256 241 217 6 chr3 37720988 37721154 -189803424 - Charlie4 DNA MER1_type -3 1958 1758 825 223 41 0 chr3 37721172 37721369 -189803209 - Charlie4 DNA MER1_type -1723 238 34 309 318 44 61 chr3 37721446 37721876 -189802702 - L2 LINE L2 -195 3077 2655 261 234 76 94 chr3 37721966 37722137 -189802441 + MLT1H LTR MaLR 1 168 -381 322 373 77 26 chr3 37722436 37722970 -189801608 - L2 LINE L2 -773 2541 1981 28 48 0 0 chr3 37723976 37724018 -189800560 + AT_rich Low_complexity Low_complexity 1 42 0 826 211 164 14 chr3 37724018 37724298 -189800280 - MER5C DNA MER1_type -1 323 2 2358 100 0 0 chr3 37724314 37724625 -189799953 - AluY SINE Alu 0 311 1 895 264 98 14 chr3 37725490 37725961 -189798617 - MLT1G LTR MaLR -12 578 1 333 167 154 26 chr3 37725962 37726040 -189798538 + MER39 LTR ERV1 48 135 -572 * 1893 200 28 48 chr3 37726013 37726063 -189798515 + MER39 LTR ERV1 257 306 -401 2158 131 13 46 chr3 37726063 37726451 -189798127 + THE1C LTR MaLR 1 375 0 1893 200 28 48 chr3 37726451 37726860 -189797718 + MER39 LTR ERV1 306 707 0 294 297 230 7 chr3 37728080 37728228 -189796350 - MER5A DNA MER1_type 0 189 9 370 308 21 35 chr3 37729094 37729237 -189795341 + MIR SINE MIR 49 189 -73 281 178 0 0 chr3 37729664 37729709 -189794869 - 5S rRNA rRNA -76 45 1 347 302 0 0 chr3 37729741 37729827 -189794751 + L2 LINE L2 3228 3313 0 217 355 19 28 chr3 37729899 37730006 -189794572 - MER5B DNA MER1_type -72 106 1 4131 139 28 12 chr3 37730179 37730920 -189793658 - L1MA4 LINE L1 -2 6298 5546 276 240 50 60 chr3 37732056 37732156 -189792422 - MER102b DNA MER1_type -11 330 232 243 125 0 0 chr3 37732266 37732306 -189792272 + (TTA)n Simple_repeat Simple_repeat 3 42 0 297 326 30 0 chr3 37732605 37732737 -189791841 - HAL1b LINE L1 -743 605 470 559 185 11 0 chr3 37732833 37732925 -189791653 + AluJ/FLAM SINE Alu 7 99 -213 324 70 0 0 chr3 37733044 37733087 -189791491 + (GAAA)n Simple_repeat Simple_repeat 4 46 0 1943 148 10 3 chr3 37733423 37733727 -189790851 - AluSx SINE Alu -6 306 1 213 211 184 70 chr3 37734494 37734608 -189789970 + MIR3 SINE MIR 1 127 -81 2267 93 0 0 chr3 37734916 37735205 -189789373 - AluY SINE Alu -12 299 11 5941 93 30 67 chr3 37735217 37736229 -189788349 - L1PA10 LINE L1 0 6168 5223 2120 134 0 0 chr3 37736229 37736528 -189788050 + AluSx SINE Alu 1 299 -13 5941 93 30 67 chr3 37736528 37737312 -189787266 - L1PA10 LINE L1 -945 5223 4412 9823 155 16 3 chr3 37737314 37739040 -189785538 + L1PA10 LINE L1 2695 4442 -1704 21 0 0 0 chr3 37739293 37739314 -189785264 + AT_rich Low_complexity Low_complexity 1 21 0 578 274 116 31 chr3 37741753 37742210 -189782368 - HAL1 LINE L1 -3 2504 1991 370 199 241 7 chr3 37742345 37742486 -189782092 + L1ME3A LINE L1 5259 5432 -730 429 288 59 0 chr3 37742659 37742829 -189781749 + L1ME3A LINE L1 5681 5860 -310 1394 192 11 49 chr3 37745494 37745843 -189778735 - MLT1B LTR MaLR -21 369 34 35126 47 4 45 chr3 37745847 37746511 -189778067 + L1P LINE L1 3 693 -5453 627 221 7 7 chr3 37746511 37746651 -189777927 - MLT1B LTR MaLR -21 369 230 35126 47 4 45 chr3 37746651 37750838 -189773740 + L1P LINE L1 693 4789 -1357 7414 31 0 0 chr3 37750938 37751818 -189772760 + L1PA4 LINE L1 5276 6155 0 519 72 91 6 chr3 37752049 37752388 -189772190 + (TA)n Simple_repeat Simple_repeat 1 367 0 33 25 0 0 chr3 37752495 37752535 -189772043 + AT_rich Low_complexity Low_complexity 1 40 0 336 296 32 0 chr3 37752816 37752941 -189771637 - L2 LINE L2 -258 3055 2927 223 277 62 36 chr3 37753095 37753207 -189771371 - L2 LINE L2 -182 3090 2976 1888 149 35 51 chr3 37753306 37753676 -189770902 - THE1B LTR MaLR 0 364 1 11626 100 3 1 chr3 37753676 37755252 -189769326 - THE1B-int LTR MaLR 0 1580 1 2079 113 38 57 chr3 37755252 37755623 -189768955 - THE1B LTR MaLR 0 364 1 870 179 68 133 chr3 37756925 37757324 -189767254 - MLT1A2 LTR MaLR 0 426 1 5921 99 4 21 chr3 37759225 37759334 -189765244 + L1PA14 LINE L1 5223 5332 -829 2238 99 3 0 chr3 37759334 37759628 -189764950 + AluY SINE Alu 1 295 -16 5921 99 4 21 chr3 37759628 37760470 -189764108 + L1PA14 LINE L1 5332 6159 -2 249 119 0 0 chr3 37763036 37763078 -189761500 + (TTTTC)n Simple_repeat Simple_repeat 4 45 0 223 318 106 12 chr3 37763080 37763165 -189761413 - L2 LINE L2 -31 3241 3149 1781 216 63 44 chr3 37763362 37763949 -189760629 + L1ME1 LINE L1 5564 6161 -5 1117 178 190 26 chr3 37764703 37764972 -189759606 + MLT1D LTR MaLR 193 505 0 403 269 60 107 chr3 37765200 37765498 -189759080 + L2 LINE L2 3029 3312 -1 270 194 0 0 chr3 37766237 37766299 -189758279 + (CA)n Simple_repeat Simple_repeat 1 62 0 727 252 128 8 chr3 37766299 37766549 -189758029 + LTR16C LTR ERVL 141 420 -71 527 223 44 118 chr3 37766701 37767025 -189757553 - LTR25-int LTR ERV1 -984 4233 741 322 186 107 125 chr3 37767064 37767278 -189757300 - LTR25-int LTR ERV1 -2325 763 282 293 245 39 20 chr3 37767488 37767590 -189756988 - LTR25-int LTR ERV1 -6462 534 431 2422 130 162 2 chr3 37767812 37768244 -189756334 - MER61D LTR ERV1 0 501 1 683 109 21 0 chr3 37768246 37768373 -189756205 - L1M2 LINE L1 -721 5447 5317 420 340 162 20 chr3 37768574 37769030 -189755548 - LTR33 LTR ERVL -2 521 1 242 200 0 0 chr3 37769872 37769912 -189754666 + L3 LINE CR1 1530 1569 -8 2014 47 8 4 chr3 37769954 37770208 -189754370 + L1PA6 LINE L1 5900 6154 0 240 184 0 0 chr3 37770287 37770336 -189754242 + CT-rich Low_complexity Low_complexity 4 52 0 3773 126 30 75 chr3 37770346 37771069 -189753509 - LTR8 LTR ERV1 0 691 1 1275 255 103 11 chr3 37771076 37771328 -189753250 - MLT1G1 LTR MaLR -179 416 116 3077 189 45 32 chr3 37771328 37772046 -189752532 + LTR8A LTR ERV1 1 727 0 1275 255 103 11 chr3 37772046 37772173 -189752405 - MLT1G1 LTR MaLR -479 116 2 23 0 0 0 chr3 37772509 37772532 -189752046 + AT_rich Low_complexity Low_complexity 1 23 0 321 288 118 20 chr3 37773210 37773363 -189751215 - MLT1H LTR MaLR -315 234 67 1598 187 45 84 chr3 37773506 37773972 -189750606 + MLT1C LTR MaLR 6 453 -14 246 299 118 16 chr3 37774619 37774746 -189749832 + L2 LINE L2 2916 3055 -217 2293 125 30 22 chr3 37775320 37775681 -189748897 - THE1B LTR MaLR 0 364 1 645 265 40 26 chr3 37775904 37776325 -189748253 + MLT1G1 LTR MaLR 113 573 -22 945 241 18 18 chr3 37776749 37776973 -189747605 + MER58A DNA MER1_type 1 224 0 4375 74 35 8 chr3 37777218 37777810 -189746768 - LTR14B LTR ERVK 0 608 1 487 315 38 5 chr3 37777978 37778162 -189746416 - MLT1K LTR MaLR -248 340 151 747 168 31 42 chr3 37778278 37778469 -189746109 - MER53 DNA DNA 0 189 1 1698 189 16 7 chr3 37778802 37779108 -189745470 + AluSx SINE Alu 1 309 -3 6805 128 11 7 chr3 37779275 37780170 -189744408 - L1MA2 LINE L1 0 6304 5397 2319 138 5 27 chr3 37780170 37780541 -189744037 + THE1B LTR MaLR 2 364 0 6805 128 11 7 chr3 37780541 37781107 -189743471 - L1MA2 LINE L1 -907 5397 4835 317 285 79 30 chr3 37781787 37781952 -189742626 + MIR SINE MIR 63 235 -27 451 344 184 23 chr3 37781984 37782257 -189742321 - HAL1 LINE L1 -1602 905 677 2286 227 87 62 chr3 37782257 37783063 -189741515 + LTR1B LTR ERV1 1 826 0 451 344 184 23 chr3 37783063 37783274 -189741304 - HAL1 LINE L1 -1830 677 343 685 276 43 87 chr3 37783323 37783881 -189740697 + MLT1G LTR MaLR 20 595 0 260 326 49 28 chr3 37783957 37784101 -189740477 + MIR SINE MIR 60 206 -56 1014 198 11 0 chr3 37784952 37785139 -189739439 - MER5A DNA MER1_type 0 189 1 22 0 0 0 chr3 37785330 37785352 -189739226 + AT_rich Low_complexity Low_complexity 1 22 0 919 105 7 13 chr3 37785713 37785865 -189738713 + (TTTC)n Simple_repeat Simple_repeat 4 154 0 265 267 40 40 chr3 37786127 37786228 -189738350 + L2 LINE L2 2108 2208 -1106 425 289 182 11 chr3 37786333 37786520 -189738058 + MIR SINE MIR 44 262 0 211 254 48 0 chr3 37787028 37787091 -189737487 + MIR SINE MIR 139 204 -58 270 0 0 0 chr3 37788362 37788392 -189736186 + (CA)n Simple_repeat Simple_repeat 2 31 0 978 313 63 24 chr3 37788525 37788950 -189735628 - LTR16C LTR ERVL 0 491 50 3180 259 81 24 chr3 37789093 37790457 -189734121 + L1M4 LINE L1 3504 4944 -1202 299 304 28 31 chr3 37790738 37790937 -189733641 + MIR SINE MIR 2 171 -91 362 335 99 12 chr3 37792101 37792262 -189732316 + MLT2E LTR ERVL 34 208 -420 243 165 110 88 chr3 37792473 37792511 -189732067 + LTR33A LTR ERVL 431 467 -56 3953 176 93 5 chr3 37792511 37793123 -189731455 - MER6 DNA MER2_type 0 865 308 357 24 0 0 chr3 37793123 37793165 -189731413 + (CA)n Simple_repeat Simple_repeat 2 43 0 294 29 0 0 chr3 37793166 37793201 -189731377 + (TC)n Simple_repeat Simple_repeat 1 35 0 3953 176 93 5 chr3 37793201 37793381 -189731197 - MER6 DNA MER2_type -556 309 1 243 165 110 88 chr3 37793381 37793433 -189731145 + LTR33A LTR ERVL 467 523 0 268 224 0 0 chr3 37793786 37793835 -189730743 - MER6 DNA MER2_type -761 104 56 568 328 64 0 chr3 37794219 37794390 -189730188 + MIR SINE MIR 5 186 -76 2316 90 0 19 chr3 37794699 37795009 -189729569 + AluSx SINE Alu 1 304 -8 279 325 12 0 chr3 37795111 37795194 -189729384 - MER5A DNA MER1_type -104 85 2 606 271 93 29 chr3 37796435 37796569 -189728009 + LTR33 LTR ERVL 3 127 -394 2378 166 21 33 chr3 37796569 37796997 -189727581 + MSTB LTR MaLR 4 426 0 606 271 93 29 chr3 37796997 37797238 -189727340 + LTR33 LTR ERVL 127 427 -94 21 0 0 0 chr3 37797484 37797505 -189727073 + AT_rich Low_complexity Low_complexity 1 21 0 1875 180 21 12 chr3 37797579 37797913 -189726665 + MER1B DNA MER1_type 1 337 0 1593 162 84 36 chr3 37798078 37798436 -189726142 - THE1C LTR MaLR 0 375 1 2999 121 8 14 chr3 37798436 37798925 -189725653 - THE1C-int LTR MaLR 0 1580 1095 9994 109 18 3 chr3 37798942 37800551 -189724027 - L1P LINE L1 -1687 4459 2827 6651 85 7 0 chr3 37800551 37802051 -189722527 + L1PA8 LINE L1 4662 6166 -6 521 299 224 14 chr3 37802400 37802694 -189721884 - L2 LINE L2 -4 3309 2954 211 282 14 0 chr3 37802694 37802765 -189721813 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 216 341 40 62 chr3 37803554 37803780 -189720798 + L2 LINE L2 1876 2096 -1218 248 362 43 6 chr3 37804338 37804501 -189720077 + L2 LINE L2 2338 2506 -808 1062 208 59 87 chr3 37805002 37805391 -189719187 - LTR40b LTR ERVL -84 378 1 417 189 0 0 chr3 37805391 37805465 -189719113 + LTR16C LTR ERVL 416 489 -2 290 230 40 0 chr3 37806367 37806441 -189718137 + CT-rich Low_complexity Low_complexity 4 80 0 22 56 0 0 chr3 37806747 37806783 -189717795 + AT_rich Low_complexity Low_complexity 1 36 0 476 311 44 32 chr3 37806864 37807112 -189717466 - MIR SINE MIR 0 262 12 965 233 100 29 chr3 37807647 37807926 -189716652 + AluJb SINE Alu 2 300 -2 351 274 0 51 chr3 37808076 37808193 -189716385 - L1MC4 LINE L1 -1318 6724 6614 320 330 0 0 chr3 37808107 37808204 -189716374 + L1MC4 LINE L1 6614 6710 -1332 * 24 0 0 0 chr3 37808614 37808638 -189715940 + AT_rich Low_complexity Low_complexity 1 24 0 317 211 41 32 chr3 37808638 37808761 -189715817 - L1MA9 LINE L1 -22 6290 6167 3497 74 13 13 chr3 37809030 37809488 -189715090 + LTR22A LTR ERVK 1 458 0 549 277 28 5 chr3 37809521 37809734 -189714844 - L1MC4 LINE L1 -2000 5808 5591 1844 170 19 19 chr3 37810873 37811185 -189713393 - AluJo SINE Alu 0 312 1 1261 153 65 47 chr3 37811656 37811822 -189712756 - LTR36 LTR ERV1 0 611 449 2572 73 0 3 chr3 37811822 37812136 -189712442 - AluSp SINE Alu 0 313 1 1261 153 65 47 chr3 37812136 37812511 -189712067 - LTR36 LTR ERV1 -162 449 11 5245 97 21 9 chr3 37812511 37813281 -189711297 + MER4E LTR ERV1 1 779 0 1261 153 65 47 chr3 37813281 37813293 -189711285 - LTR36 LTR ERV1 -600 11 1 4106 100 3 102 chr3 37813658 37814395 -189710183 + MER4A LTR ERV1 1 664 0 339 127 0 18 chr3 37814537 37814592 -189709986 + AluSc SINE Alu 105 158 -141 230 232 37 0 chr3 37815734 37815816 -189708762 + (TA)n Simple_repeat Simple_repeat 2 86 0 1211 177 33 46 chr3 37816308 37816623 -189707955 + MLT1B LTR MaLR 1 226 -164 1570 222 19 19 chr3 37816623 37816988 -189707590 - MLT1A1 LTR MaLR 0 365 1 1211 177 33 46 chr3 37816988 37817149 -189707429 + MLT1B LTR MaLR 226 388 -2 1800 135 0 0 chr3 37817172 37817439 -189707139 - AluSx SINE Alu 0 306 40 740 221 6 18 chr3 37817466 37817629 -189706949 + MER20 DNA MER1_type 2 162 -57 284 226 0 0 chr3 37817671 37817724 -189706854 + MER20 DNA MER1_type 167 219 0 2054 152 0 0 chr3 37818110 37818407 -189706171 + AluSx SINE Alu 1 297 -15 399 316 63 42 chr3 37819781 37820285 -189704293 + L1MEc LINE L1 338 852 -5544 526 234 262 0 chr3 37820287 37820501 -189704077 + SATR1 Satellite Satellite 200 469 -1 928 249 186 54 chr3 37820533 37821441 -189703137 + SATR1 Satellite Satellite 1 1027 -1 1098 198 271 17 chr3 37821616 37822136 -189702442 + SATR1 Satellite Satellite 1 651 -1 820 209 309 6 chr3 37822221 37822641 -189701937 + SATR1 Satellite Satellite 1 547 -247 * 1337 183 53 0 chr3 37822635 37822897 -189701681 + Tigger3(Golem) DNA MER2_type 2753 3028 -1 1167 163 54 17 chr3 37822899 37823126 -189701452 - Tigger2 DNA MER2_type 0 2718 2480 549 209 14 65 chr3 37823126 37823265 -189701313 + FLAM_C SINE Alu 2 133 0 1167 163 54 17 chr3 37823265 37823277 -189701301 - Tigger2 DNA MER2_type -238 2480 2470 2239 99 0 0 chr3 37826145 37826476 -189698102 + AluSx SINE Alu 1 331 0 312 256 77 34 chr3 37827146 37827263 -189697315 + MER96B DNA MER1_type? 296 417 0 431 300 147 0 chr3 37827603 37827753 -189696825 + MER5A DNA MER1_type 12 183 -6 26 0 0 0 chr3 37827777 37827803 -189696775 + AT_rich Low_complexity Low_complexity 1 26 0 4257 127 6 51 chr3 37827808 37828532 -189696046 + LTR8 LTR ERV1 1 691 0 23 68 0 0 chr3 37828553 37828597 -189695981 + AT_rich Low_complexity Low_complexity 1 44 0 2372 71 0 20 chr3 37828877 37829173 -189695405 - AluSc SINE Alu -19 290 1 223 231 31 0 chr3 37829562 37829627 -189694951 + CT-rich Low_complexity Low_complexity 2 68 0 321 250 103 9 chr3 37830254 37830370 -189694208 + MIR SINE MIR 74 200 -62 2053 210 37 16 chr3 37830386 37830900 -189693678 - MER34 LTR ERV1 -10 532 8 216 0 0 0 chr3 37831116 37831140 -189693438 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 457 235 77 104 chr3 37831290 37831473 -189693105 - MER5B DNA MER1_type 0 178 1 429 290 9 3 chr3 37831790 37831973 -189692605 + L1MC4a LINE L1 6450 6577 -1231 534 199 233 98 chr3 37831986 37832264 -189692314 + MSTD LTR MaLR 3 339 -57 359 131 12 24 chr3 37832264 37832348 -189692230 - L1PB1 LINE L1 -3 6148 6066 534 199 233 98 chr3 37832348 37832416 -189692162 + MSTD LTR MaLR 339 396 0 2195 232 263 18 chr3 37832463 37833442 -189691136 + L1MC4 LINE L1 6686 7903 -139 275 250 190 20 chr3 37833928 37834028 -189690550 + L2 LINE L2 3195 3311 -2 257 298 42 83 chr3 37834342 37834510 -189690068 + MIR3 SINE MIR 46 206 -2 619 297 45 32 chr3 37835121 37835367 -189689211 - LTR16C LTR ERVL -11 480 232 922 277 104 14 chr3 37835375 37835729 -189688849 + MLT1G1 LTR MaLR 11 396 -199 7036 47 1 0 chr3 37835731 37836627 -189687951 - L1PA5 LINE L1 -4 6150 5254 2953 31 0 5 chr3 37836630 37837011 -189687567 + L1PA5 LINE L1 4851 5229 -917 639 273 23 27 chr3 37837015 37837235 -189687343 + MLT1G1 LTR MaLR 372 590 0 1408 158 0 5 chr3 37838299 37838508 -189686070 - AluJb SINE Alu -104 208 1 1161 216 127 60 chr3 37838851 37839332 -189685246 - LTR1B LTR ERV1 0 826 314 767 160 47 12 chr3 37841336 37841505 -189683073 - L1MB1 LINE L1 -13 6155 5981 2125 172 42 29 chr3 37841518 37841713 -189682865 - L1MA10 LINE L1 -4 6330 6139 2403 69 0 3 chr3 37841713 37842017 -189682561 - AluY SINE Alu -8 303 1 2125 172 42 29 chr3 37842017 37842298 -189682280 - L1MA10 LINE L1 -195 6139 5848 2156 202 8 38 chr3 37842298 37842788 -189681790 - MER61-int LTR ERV1 -494 4723 4247 834 215 72 65 chr3 37842964 37843285 -189681293 - L1ME3A LINE L1 -4 6166 5844 420 240 31 23 chr3 37844064 37844193 -189680385 + MIR SINE MIR 133 262 0 298 248 113 57 chr3 37844364 37844505 -189680073 + MIR SINE MIR 86 234 -28 2359 107 0 0 chr3 37845068 37845378 -189679200 - AluSg SINE Alu 0 310 1 1552 199 59 17 chr3 37845513 37845869 -189678709 - MER31B LTR ERV1 -95 371 1 6325 134 44 13 chr3 37847583 37848665 -189675913 + Tigger3b DNA MER2_type 116 1231 0 219 286 71 0 chr3 37848701 37848771 -189675807 - MIR3 SINE MIR -15 193 119 254 232 43 14 chr3 37848857 37848926 -189675652 + C-rich Low_complexity Low_complexity 4 74 0 386 145 0 12 chr3 37848931 37849014 -189675564 + (TC)n Simple_repeat Simple_repeat 1 82 0 300 354 39 0 chr3 37849032 37849162 -189675416 + MIR3 SINE MIR 32 166 -42 396 292 59 19 chr3 37849182 37849370 -189675208 + MLT1J2 LTR MaLR 20 213 -233 209 245 75 0 chr3 37849631 37849684 -189674894 - L2 LINE L2 -2 3311 3255 587 210 96 19 chr3 37851027 37851184 -189673394 + MIR SINE MIR 89 257 -5 336 232 43 114 chr3 37851449 37851660 -189672918 + MLT1K LTR MaLR 378 573 -15 286 237 13 13 chr3 37851759 37851835 -189672743 + GA-rich Low_complexity Low_complexity 1 76 0 379 290 62 26 chr3 37852069 37852262 -189672316 - L3 LINE CR1 -180 1397 1198 2577 247 48 9 chr3 37853190 37853920 -189670658 + L1ME1 LINE L1 5400 6154 -12 228 324 10 20 chr3 37854203 37854305 -189670273 - MLT1J LTR MaLR -374 175 75 307 237 21 54 chr3 37855977 37856070 -189668508 + MER5A DNA MER1_type 74 163 -26 202 289 96 0 chr3 37858504 37858587 -189665991 + L2 LINE L2 3214 3304 -9 234 340 31 21 chr3 37858667 37858764 -189665814 - MIR SINE MIR -65 143 46 375 157 74 66 chr3 37859465 37859586 -189664992 - LTR37B LTR ERV1 -4 464 343 322 260 21 0 chr3 37859664 37859760 -189664818 - LTR37B LTR ERV1 -167 301 204 223 137 0 83 chr3 37859872 37860040 -189664538 + (TA)n Simple_repeat Simple_repeat 2 155 0 359 124 5 77 chr3 37860114 37860308 -189664270 + (TA)n Simple_repeat Simple_repeat 1 180 0 342 67 0 0 chr3 37861018 37861063 -189663515 + (TG)n Simple_repeat Simple_repeat 1 45 0 288 289 21 10 chr3 37861865 37861962 -189662616 - MLT1J LTR MaLR -413 98 1 686 139 8 33 chr3 37861991 37862113 -189662465 - FRAM SINE Alu -26 150 32 383 333 39 39 chr3 37862151 37862385 -189662193 - MIR SINE MIR -16 246 13 1796 210 42 2 chr3 37862601 37863001 -189661577 + MER63C DNA MER1_type 87 502 -428 650 290 27 27 chr3 37863011 37863235 -189661343 + MER58A DNA MER1_type 1 224 0 1044 199 74 52 chr3 37865016 37865287 -189659291 - MLT1B LTR MaLR -110 280 4 242 200 0 129 chr3 37865862 37865932 -189658646 + L2 LINE L2 3250 3310 -3 560 260 106 34 chr3 37866119 37866561 -189658017 - HAL1b LINE L1 -249 1099 626 415 283 71 90 chr3 37866831 37867153 -189657425 - HAL1b LINE L1 -1026 322 7 836 267 37 64 chr3 37867363 37867686 -189656892 + MER21B LTR ERV1 332 645 -218 1977 200 41 91 chr3 37867686 37868245 -189656333 - LTR26E LTR ERV1 0 622 1 559 269 42 6 chr3 37868245 37868410 -189656168 + MER21B LTR ERV1 642 812 -51 2095 184 68 42 chr3 37869529 37869985 -189654593 + MLT1D LTR MaLR 38 505 0 388 275 127 48 chr3 37872419 37872859 -189651719 - MLT1K LTR MaLR -1 475 1 721 269 77 27 chr3 37872879 37873125 -189651453 + MLT1D LTR MaLR 2 260 -245 244 209 128 35 chr3 37873125 37873211 -189651367 - MER34 LTR ERV1 0 542 449 73 57 0 0 chr3 37873261 37873383 -189651195 + AT_rich Low_complexity Low_complexity 1 122 0 927 233 43 0 chr3 37874787 37874997 -189649581 + MER20 DNA MER1_type 1 219 0 265 114 0 0 chr3 37875458 37875493 -189649085 - U2 snRNA snRNA -153 35 1 181 368 75 19 chr3 37875528 37875634 -189648944 - MIR SINE MIR -81 127 16 2025 253 66 12 chr3 37875829 37876390 -189648188 + MLT1G1 LTR MaLR 5 595 0 2026 125 3 30 chr3 37876723 37877028 -189647550 + AluSx SINE Alu 1 297 -15 765 281 88 24 chr3 37877748 37878779 -189645799 + L1ME3A LINE L1 4758 5852 -318 38 0 0 0 chr3 37879963 37880001 -189644577 + AT_rich Low_complexity Low_complexity 1 38 0 767 277 59 84 chr3 37880786 37881227 -189643351 - MER110 LTR ERV1 0 468 80 29 0 0 0 chr3 37881598 37881627 -189642951 + AT_rich Low_complexity Low_complexity 1 29 0 216 293 35 0 chr3 37881829 37881887 -189642691 + MIR SINE MIR 203 262 0 226 314 0 0 chr3 37881950 37882001 -189642577 + L2 LINE L2 3212 3262 -10 263 257 0 0 chr3 37883648 37883718 -189640860 + MLT1J LTR MaLR 111 180 -331 2276 104 0 19 chr3 37884494 37884810 -189639768 + AluSg SINE Alu 1 310 0 234 333 72 0 chr3 37885053 37885164 -189639414 + MIR SINE MIR 84 202 -60 192 320 67 13 chr3 37886751 37886826 -189637752 - MIR3 SINE MIR -5 203 125 189 0 0 0 chr3 37887341 37887362 -189637216 + (CAA)n Simple_repeat Simple_repeat 1 21 0 7044 58 8 3 chr3 37887619 37888522 -189636056 - L1PA8 LINE L1 0 6172 5266 4053 97 0 0 chr3 37888520 37889105 -189635473 + L1PA8 LINE L1 4673 5257 -889 * 22 0 0 0 chr3 37889106 37889128 -189635450 + AT_rich Low_complexity Low_complexity 1 22 0 192 309 126 97 chr3 37889543 37889812 -189634766 + L2 LINE L2 2615 2891 -423 1897 161 58 3 chr3 37890365 37890695 -189633883 + MSTC LTR MaLR 81 428 0 343 229 0 0 chr3 37890807 37890868 -189633710 + Tigger2 DNA MER2_type 1 61 -2657 239 191 103 73 chr3 37890877 37890945 -189633633 - MER2 DNA MER2_type 0 345 276 * 735 244 54 6 chr3 37890912 37891080 -189633498 - MER8 DNA MER2_type -63 176 1 210 239 0 0 chr3 37891260 37891306 -189633272 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 235 370 33 11 chr3 37891946 37892038 -189632540 - L3 LINE CR1 -104 1473 1380 4344 259 67 31 chr3 37892946 37895957 -189628621 + L1ME1 LINE L1 35 2936 -3299 1549 179 7 33 chr3 37895957 37896258 -189628320 + AluJb SINE Alu 6 298 -14 4344 259 67 31 chr3 37896258 37897193 -189627385 + L1ME1 LINE L1 2936 6187 -48 345 254 26 9 chr3 37897125 37897239 -189627339 + L1MA10 LINE L1 6280 6395 -8 * 216 152 45 0 chr3 37897989 37898055 -189626523 + (TA)n Simple_repeat Simple_repeat 2 70 0 571 196 77 36 chr3 37898303 37898497 -189626081 + L1ME3A LINE L1 5753 5954 -216 301 261 176 17 chr3 37898833 37898952 -189625626 + AluJb SINE Alu 2 139 -163 908 160 0 101 chr3 37899119 37899338 -189625240 + L1MA9 LINE L1 6078 6274 -38 300 309 39 11 chr3 37899388 37899566 -189625012 - L1ME LINE L1 -337 5784 5602 253 317 92 17 chr3 37899605 37899725 -189624853 - L1ME LINE L1 -2226 5582 5454 264 213 223 11 chr3 37899732 37899826 -189624752 + L2 LINE L2 3195 3308 -5 22 0 0 0 chr3 37899970 37899992 -189624586 + AT_rich Low_complexity Low_complexity 1 22 0 5426 34 0 0 chr3 37900011 37900650 -189623928 - L1PA5 LINE L1 -2 6152 5514 23367 78 9 0 chr3 37900650 37903745 -189620833 - L1P LINE L1 -3024 3122 1 272 377 97 39 chr3 37904881 37905411 -189619167 + L2 LINE L2 2354 2924 -390 1982 125 3 21 chr3 37905411 37905735 -189618843 - AluSx SINE Alu 0 319 1 272 377 97 39 chr3 37905735 37905792 -189618786 + L2 LINE L2 2924 2976 -338 397 212 124 44 chr3 37906197 37906310 -189618268 + MIR SINE MIR 43 164 -98 216 214 0 0 chr3 37906373 37906415 -189618163 + (TA)n Simple_repeat Simple_repeat 2 43 0 377 302 65 12 chr3 37906472 37906641 -189617937 - MLT1J LTR MaLR -317 194 17 359 287 30 0 chr3 37906647 37906748 -189617830 + MIR SINE MIR 159 262 0 320 339 8 24 chr3 37906730 37906854 -189617724 - MIR SINE MIR -101 161 40 * 1291 247 69 45 chr3 37907283 37907732 -189616846 + MLT1C LTR MaLR 8 467 0 202 403 67 8 chr3 37908630 37908764 -189615814 - L2 LINE L2 -2 3270 3129 23 97 0 0 chr3 37909349 37909421 -189615157 + AT_rich Low_complexity Low_complexity 1 72 0 14373 134 35 3 chr3 37909575 37911916 -189612662 - Tigger1 DNA MER2_type -2 2416 1 257 236 94 4 chr3 37913028 37913116 -189611462 + MIR SINE MIR 50 143 -65 207 0 0 0 chr3 37913458 37913481 -189611097 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 181 214 60 128 chr3 37913651 37913768 -189610810 + MIR SINE MIR 146 254 -8 231 309 74 78 chr3 37914956 37915199 -189609379 - L3b LINE CR1 -222 1361 1120 1416 183 0 37 chr3 37915679 37915976 -189608602 + AluJo SINE Alu 21 307 0 22 0 0 0 chr3 37916568 37916590 -189607988 + AT_rich Low_complexity Low_complexity 1 22 0 25 46 0 46 chr3 37916729 37916767 -189607811 + AT_rich Low_complexity Low_complexity 1 37 -25 2180 107 0 0 chr3 37916767 37917071 -189607507 - AluSg SINE Alu 0 304 1 25 46 0 46 chr3 37917071 37917096 -189607482 + AT_rich Low_complexity Low_complexity 37 62 0 21 0 0 0 chr3 37917580 37917601 -189606977 + AT_rich Low_complexity Low_complexity 1 21 0 309 259 35 0 chr3 37918086 37918171 -189606407 - L2 LINE L2 -2 3270 3183 2158 153 14 0 chr3 37919603 37919969 -189604609 - THE1C LTR MaLR -4 371 1 374 253 199 7 chr3 37920097 37920243 -189604335 + MER5A DNA MER1_type 14 187 -2 1336 222 65 16 chr3 37920372 37920755 -189603823 - Charlie4a DNA MER1_type -101 407 6 242 231 0 0 chr3 37921335 37921387 -189603191 + L2 LINE L2 3261 3312 -1 255 255 21 21 chr3 37922277 37922371 -189602207 + (CATATA)n Simple_repeat Simple_repeat 3 96 0 386 207 42 136 chr3 37922403 37922616 -189601962 + L1MEd LINE L1 789 981 -5138 25 31 0 0 chr3 37922647 37922679 -189601899 + AT_rich Low_complexity Low_complexity 1 32 0 463 325 81 4 chr3 37922752 37923111 -189601467 + L1ME3 LINE L1 5255 5639 -525 476 288 164 31 chr3 37923117 37923343 -189601235 + MIR SINE MIR 3 258 -4 442 260 34 25 chr3 37923402 37923573 -189601005 + L1ME3 LINE L1 5655 5829 -333 725 250 0 13 chr3 37923595 37923751 -189600827 + MER58A DNA MER1_type 45 198 -26 47 44 0 0 chr3 37923764 37923832 -189600746 + AT_rich Low_complexity Low_complexity 1 68 0 557 261 81 19 chr3 37924051 37924212 -189600366 + MER5B DNA MER1_type 8 178 0 6417 154 16 14 chr3 37924457 37926328 -189598250 - L1MA2 LINE L1 0 6304 4432 3940 245 88 39 chr3 37926314 37927796 -189596782 - L1M4 LINE L1 -4974 1568 15 * 306 132 0 19 chr3 37928658 37928711 -189595867 + L2 LINE L2 3262 3313 0 2273 170 67 0 chr3 37930520 37930921 -189593657 + MSTA LTR MaLR 1 428 0 257 342 57 36 chr3 37931020 37931213 -189593365 + MER117 DNA MER1_type 1 197 0 7608 22 7 0 chr3 37931781 37932900 -189591678 + L1PA2 LINE L1 5030 6155 0 21 57 0 0 chr3 37932900 37932935 -189591643 + AT_rich Low_complexity Low_complexity 1 35 0 384 125 0 0 chr3 37933586 37933650 -189590928 + (TTCCC)n Simple_repeat Simple_repeat 3 66 0 271 150 20 150 chr3 37934282 37934382 -189590196 + MLT1H LTR MaLR 3 89 -460 348 273 10 0 chr3 37934587 37934686 -189589892 + MLT1H LTR MaLR 450 549 0 416 96 32 11 chr3 37935310 37935404 -189589174 + (TA)n Simple_repeat Simple_repeat 2 97 0 1416 173 22 29 chr3 37936174 37936446 -189588132 + AluJo SINE Alu 39 308 -4 786 276 43 83 chr3 37936555 37936953 -189587625 + LTR16B LTR ERVL 83 464 0 183 379 10 0 chr3 37936958 37937061 -189587517 - L2 LINE L2 -1027 2287 2184 799 237 131 0 chr3 37937868 37938066 -189586512 - MER58A DNA MER1_type 0 224 1 809 144 75 0 chr3 37939033 37939206 -189585372 + MER53 DNA DNA 3 188 -1 466 271 97 7 chr3 37939309 37939453 -189585125 - MLT1J2 LTR MaLR -7 443 287 1902 291 107 81 chr3 37939666 37941163 -189583415 - L2 LINE L2 -37 3276 1751 250 400 84 13 chr3 37941208 37941363 -189583215 - L2 LINE L2 -1 3271 3106 859 212 41 0 chr3 37941714 37941884 -189582694 + MER5A DNA MER1_type 10 186 -3 2637 163 42 12 chr3 37942216 37942714 -189581864 - L1PA16 LINE L1 -16 6150 5638 3339 122 8 2 chr3 37942716 37943218 -189581360 + L1PA14 LINE L1 5656 6160 -1 2140 99 0 10 chr3 37943217 37943529 -189581049 - L1PA16 LINE L1 -501 5665 5357 * 346 255 186 12 chr3 37944138 37944299 -189580279 - MIR SINE MIR 0 262 74 1885 115 82 75 chr3 37944915 37945342 -189579236 - MSTB1 LTR MaLR -2 430 1 235 282 235 0 chr3 37945343 37945428 -189579150 + MIR SINE MIR 110 214 -48 598 292 53 4 chr3 37945609 37945852 -189578726 - MIR SINE MIR -3 259 5 263 344 94 6 chr3 37946927 37947087 -189577491 - MIR SINE MIR -60 202 29 359 211 133 34 chr3 37947126 37947231 -189577347 + MER5A DNA MER1_type 4 134 -55 1591 191 13 20 chr3 37947231 37947530 -189577048 - AluJo SINE Alu -8 304 8 359 211 133 34 chr3 37947530 37947581 -189576997 + MER5A DNA MER1_type 134 179 -10 238 258 0 45 chr3 37948765 37948831 -189575747 - LTR50 LTR ERVL -346 449 387 2214 171 10 10 chr3 37949315 37949718 -189574860 - MER57A LTR ERV1 0 403 1 279 246 57 57 chr3 37949845 37949967 -189574611 + MER112 DNA MER1_type 30 151 -109 15363 100 39 31 chr3 37950315 37952883 -189571695 + L1PBa LINE L1 3 2589 -4274 312 27 0 0 chr3 37953014 37953051 -189571527 + (TC)n Simple_repeat Simple_repeat 1 37 0 2436 146 24 9 chr3 37953105 37953531 -189571047 + MSTB1 LTR MaLR 1 432 0 890 190 92 0 chr3 37953533 37953728 -189570850 + MER20 DNA MER1_type 7 219 0 817 152 99 7 chr3 37954985 37955136 -189569442 - MER5A DNA MER1_type -15 174 10 927 287 105 32 chr3 37955377 37955757 -189568821 - MLT1K LTR MaLR -178 410 3 23 68 0 0 chr3 37956664 37956708 -189567870 + AT_rich Low_complexity Low_complexity 1 44 0 701 332 9 29 chr3 37957306 37957646 -189566932 - LTR16C LTR ERVL -90 401 69 2316 99 23 0 chr3 37957925 37958227 -189566351 - AluSg SINE Alu -1 309 1 230 154 0 39 chr3 37958729 37958781 -189565797 - HsTC2 DNA Tc2 -1835 63 14 216 0 0 0 chr3 37959237 37959261 -189565317 + (T)n Simple_repeat Simple_repeat 1 24 0 183 306 0 0 chr3 37960479 37960528 -189564050 + MIR SINE MIR 95 143 -119 3961 173 14 9 chr3 37960581 37961360 -189563218 - L1PB4 LINE L1 -4 6152 5370 239 156 16 31 chr3 37961488 37961552 -189563026 + (TAA)n Simple_repeat Simple_repeat 1 63 0 405 0 0 0 chr3 37961815 37961860 -189562718 + (TG)n Simple_repeat Simple_repeat 1 45 0 336 133 0 0 chr3 37961863 37961923 -189562655 + (GA)n Simple_repeat Simple_repeat 1 60 0 3667 111 20 0 chr3 37961941 37962482 -189562096 + MER41A LTR ERV1 3 554 0 5154 123 44 6 chr3 37962567 37963387 -189561191 + MER41A-int LTR ERV1 1 851 -5095 4127 160 88 22 chr3 37963378 37964354 -189560224 + MER41A-int LTR ERV1 934 2220 -3726 * 12750 153 71 50 chr3 37964335 37966469 -189558109 + MER41A-int LTR ERV1 2648 4873 -1073 2025 119 33 23 chr3 37966469 37966772 -189557806 + AluSx SINE Alu 1 306 -6 12750 153 71 50 chr3 37966772 37967867 -189556711 + MER41A-int LTR ERV1 4873 5944 -2 4269 81 0 0 chr3 37967867 37968421 -189556157 + MER41A LTR ERV1 1 554 0 2187 125 0 0 chr3 37968487 37968784 -189555794 - AluSg SINE Alu -13 297 1 367 297 171 0 chr3 37968793 37968968 -189555610 - L1ME4a LINE L1 -238 5883 5679 30 69 0 0 chr3 37969301 37969359 -189555219 + AT_rich Low_complexity Low_complexity 1 58 0 314 210 32 0 chr3 37969484 37969546 -189555032 - MIR SINE MIR -103 105 42 235 148 0 131 chr3 37970150 37970211 -189554367 + L2 LINE L2 3261 3313 0 500 300 12 42 chr3 37970261 37970501 -189554077 - L2 LINE L2 -37 3276 3044 1049 237 84 3 chr3 37970504 37970850 -189553728 - Zaphod DNA AcHobo -4 4027 3654 1163 250 44 45 chr3 37970881 37971520 -189553058 - Zaphod DNA AcHobo -3030 1001 364 435 290 14 0 chr3 37971526 37971664 -189552914 - MLT1F1 LTR MaLR 0 567 428 740 270 46 8 chr3 37971767 37972008 -189552570 - MER69 DNA AcHobo -2211 315 66 325 352 99 30 chr3 37973778 37974011 -189550567 + L2 LINE L2 2825 3073 -199 395 283 66 20 chr3 37974011 37974209 -189550369 + MER106A DNA MER1_type 1 207 -29 242 360 61 0 chr3 37974362 37974476 -189550102 + L2 LINE L2 3146 3266 -6 1524 204 21 43 chr3 37974946 37975318 -189549260 + MLT1A1 LTR MaLR 1 364 -1 550 340 33 12 chr3 37975401 37975645 -189548933 - MIR SINE MIR -4 258 10 218 261 15 15 chr3 37975994 37976059 -189548519 + GA-rich Low_complexity Low_complexity 2 66 0 412 316 119 21 chr3 37976849 37977042 -189547536 + MIR SINE MIR 13 224 -38 207 0 0 0 chr3 37977631 37977654 -189546924 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 483 304 70 25 chr3 37979186 37979387 -189545191 - MIR SINE MIR -34 228 19 355 281 99 54 chr3 37981285 37981606 -189542972 + L2 LINE L2 2736 3072 -200 284 276 252 0 chr3 37982396 37982519 -189542059 + L2 LINE L2 3160 3313 0 483 363 59 17 chr3 37983682 37983919 -189540659 + MIR SINE MIR 10 256 -6 306 0 0 0 chr3 37984369 37984403 -189540175 + (CA)n Simple_repeat Simple_repeat 1 34 0 345 240 8 32 chr3 37985010 37985135 -189539443 + L1MC4 LINE L1 7920 8041 -1 22 0 0 0 chr3 37985393 37985415 -189539163 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 37985560 37985583 -189538995 + AT_rich Low_complexity Low_complexity 1 23 0 818 185 47 31 chr3 37986491 37986682 -189537896 + MIR SINE MIR 42 238 -24 543 196 30 112 chr3 37988544 37988830 -189535748 - L1MD3 LINE L1 -14 7981 6072 811 262 74 4 chr3 37988916 37989145 -189535433 + MIR SINE MIR 13 257 -5 1761 170 0 41 chr3 37990077 37990395 -189534183 - AluJo SINE Alu -7 305 1 435 253 107 65 chr3 37990494 37991000 -189533578 + L1ME4a LINE L1 5543 6069 -52 945 226 144 50 chr3 37991261 37991623 -189532955 - MLT1D LTR MaLR 0 505 110 1308 167 5 0 chr3 37991650 37991866 -189532712 - U3 snRNA snRNA 0 217 1 2150 184 52 27 chr3 37991898 37992062 -189532516 - LTR32 LTR ERVL 0 471 313 2346 102 0 3 chr3 37992062 37992367 -189532211 + AluSc SINE Alu 1 304 -5 2150 184 52 27 chr3 37992367 37992648 -189531930 - LTR32 LTR ERVL -158 313 15 412 162 0 27 chr3 37992628 37992702 -189531876 - LTR32 LTR ERVL -383 88 17 * 263 255 32 32 chr3 37992689 37992783 -189531795 - MLT1D LTR MaLR -528 98 5 * 448 215 155 84 chr3 37993057 37993308 -189531270 - LTR33 LTR ERVL -24 497 229 396 288 13 52 chr3 37993334 37993487 -189531091 - LTR33 LTR ERVL -373 148 2 870 296 60 26 chr3 37993489 37993904 -189530674 - L2 LINE L2 -1248 2066 1638 1987 185 44 22 chr3 37994167 37994577 -189530001 - MSTB1 LTR MaLR -13 419 1 409 273 32 45 chr3 37994669 37994889 -189529689 - MER113 DNA MER1_type? -304 217 1 780 224 141 42 chr3 37996012 37996423 -189528155 - MLT1C LTR MaLR 0 467 8 238 293 91 0 chr3 37996961 37997060 -189527518 - MIR SINE MIR -48 214 107 1315 187 4 4 chr3 37998388 37998666 -189525912 + L1MA4 LINE L1 6018 6295 -5 186 280 174 38 chr3 37999940 38000072 -189524506 + L2 LINE L2 3122 3271 -1 540 205 21 115 chr3 38000203 38000387 -189524191 + MER58B DNA MER1_type 173 341 0 2015 148 0 7 chr3 38000886 38001189 -189523389 - AluSx SINE Alu -11 301 1 867 283 39 18 chr3 38001358 38001637 -189522941 - MLT1I LTR MaLR -4 405 121 498 252 32 93 chr3 38001773 38002019 -189522559 - L2 LINE L2 0 3313 3083 279 358 63 29 chr3 38002004 38002211 -189522367 - L2 LINE L2 -3064 250 37 * 221 244 22 0 chr3 38003237 38003282 -189521296 - L2 LINE L2 -21 3251 3206 1027 275 25 18 chr3 38003285 38003561 -189521017 + MLT1H LTR MaLR 13 290 -259 554 292 78 7 chr3 38003828 38003982 -189520596 - MIR SINE MIR -49 213 49 347 260 105 50 chr3 38006691 38006872 -189517706 + MIR SINE MIR 66 256 -6 600 277 121 49 chr3 38007828 38008390 -189516188 + MLT1E1 LTR MaLR 1 621 -3 375 89 0 0 chr3 38008501 38008557 -189516021 + (CA)n Simple_repeat Simple_repeat 1 56 0 10843 180 10 1 chr3 38008711 38011602 -189512976 + L1PA14 LINE L1 3254 6161 0 2049 205 103 40 chr3 38012187 38013010 -189511568 + MER63C DNA MER1_type 1 930 0 24 0 0 0 chr3 38013464 38013488 -189511090 + AT_rich Low_complexity Low_complexity 1 24 0 431 286 193 32 chr3 38013589 38014246 -189510332 + HAL1b LINE L1 93 855 -493 5426 215 30 15 chr3 38014250 38016224 -189508354 + L1MC1 LINE L1 4330 6330 -3 21 57 0 0 chr3 38016875 38016910 -189507668 + AT_rich Low_complexity Low_complexity 1 35 0 527 331 14 32 chr3 38016911 38017145 -189507433 - MIR SINE MIR -31 231 2 231 281 73 0 chr3 38017244 38017326 -189507252 - MIR SINE MIR -73 189 102 229 197 16 0 chr3 38018287 38018348 -189506230 - L1ME4a LINE L1 0 6121 6060 4797 80 17 5 chr3 38018425 38019077 -189505501 - PABL_A LTR ERV1 0 660 1 449 240 107 7 chr3 38019087 38019237 -189505341 + L1ME3 LINE L1 5997 6161 -1 496 266 80 42 chr3 38019857 38020120 -189504458 - LTR16A1 LTR ERVL -40 417 145 24 0 0 0 chr3 38021211 38021235 -189503343 + AT_rich Low_complexity Low_complexity 1 24 0 375 235 106 31 chr3 38021309 38021449 -189503129 + MIR SINE MIR 41 190 -62 3919 154 7 9 chr3 38021471 38022153 -189502425 + L1PA16 LINE L1 5476 6156 -10 355 269 71 50 chr3 38022600 38022741 -189501837 + MIR3 SINE MIR 35 178 -30 413 183 140 0 chr3 38023133 38023226 -189501352 - LTR47A LTR ERVL -86 366 261 805 145 0 0 chr3 38023454 38023571 -189501007 + AluSq/x SINE Alu 1 117 -196 9926 48 3 0 chr3 38023571 38025583 -189498995 - L1PA5 LINE L1 0 6154 4137 2382 32 0 0 chr3 38025583 38025868 -189498710 + L1P LINE L1 3609 3893 -2253 491 270 12 123 chr3 38026246 38026498 -189498080 - MLT1J LTR MaLR -145 366 143 212 213 307 0 chr3 38026915 38026990 -189497588 - MER5A DNA MER1_type -88 101 4 1339 182 38 22 chr3 38027002 38027320 -189497258 + MER33 DNA MER1_type 2 324 0 488 301 26 7 chr3 38027344 38027497 -189497081 + MIR SINE MIR 53 208 -54 189 0 0 0 chr3 38030056 38030077 -189494501 + (GA)n Simple_repeat Simple_repeat 2 22 0 180 0 0 0 chr3 38031149 38031169 -189493409 + (TAAAA)n Simple_repeat Simple_repeat 1 20 0 1251 182 45 57 chr3 38032128 38032530 -189492048 + L1ME2 LINE L1 5732 6065 -99 238 127 14 84 chr3 38032498 38032569 -189492009 - L1MC4 LINE L1 -1339 6703 6638 * 456 286 34 55 chr3 38032764 38033002 -189491576 - MIR SINE MIR -14 248 16 198 0 0 0 chr3 38033975 38033997 -189490581 + (CA)n Simple_repeat Simple_repeat 1 22 0 342 0 0 0 chr3 38034025 38034063 -189490515 + (CA)n Simple_repeat Simple_repeat 1 38 0 348 332 199 5 chr3 38035232 38035443 -189489135 + MIR SINE MIR 1 252 -10 1872 284 18 34 chr3 38037352 38038025 -189486553 + MLT2F LTR ERVL 1 662 -1 180 77 0 0 chr3 38038296 38038322 -189486256 + (TA)n Simple_repeat Simple_repeat 1 26 0 234 62 0 0 chr3 38038323 38038355 -189486223 + (TG)n Simple_repeat Simple_repeat 2 33 0 779 352 82 25 chr3 38038741 38039329 -189485249 + L3 LINE CR1 939 1559 -18 535 341 56 20 chr3 38039618 38039923 -189484655 + MER102b DNA MER1_type 26 341 0 320 258 25 33 chr3 38040010 38040130 -189484448 - LTR16C LTR ERVL 0 491 373 1099 177 32 85 chr3 38040591 38040743 -189483835 + MER58B DNA MER1_type 1 159 -2261 1037 16 8 0 chr3 38040743 38040869 -189483709 - L1PA6 LINE L1 0 6154 6028 1099 177 32 85 chr3 38040869 38041099 -189483479 + MER58B DNA MER1_type 159 341 0 342 320 39 0 chr3 38041784 38041887 -189482691 - L2 LINE L2 0 3272 3166 181 324 54 0 chr3 38042813 38042887 -189481691 + MIR3 SINE MIR 84 161 -47 27 29 0 0 chr3 38043665 38043699 -189480879 + AT_rich Low_complexity Low_complexity 1 34 0 618 330 32 5 chr3 38044194 38044382 -189480196 - MER91A DNA MER1_type -3 193 1 419 295 29 0 chr3 38045599 38045704 -189478874 - L2 LINE L2 -3 3310 3203 332 221 55 90 chr3 38046037 38046182 -189478396 - L1ME3A LINE L1 -8 6162 6023 617 203 27 27 chr3 38046552 38046700 -189477878 - L1ME3A LINE L1 -189 5981 5834 423 0 0 0 chr3 38046925 38046972 -189477606 + (TG)n Simple_repeat Simple_repeat 2 48 0 5023 215 74 76 chr3 38048703 38050725 -189473853 + L1MC4a LINE L1 5791 7808 0 937 254 72 6 chr3 38050742 38050920 -189473658 + L1ME3A LINE L1 810 975 -5421 2152 154 58 51 chr3 38050920 38051407 -189473171 + LTR2B LTR ERV1 1 490 0 937 254 72 6 chr3 38051407 38051575 -189473003 + L1ME3A LINE L1 975 1179 -5217 671 245 21 30 chr3 38051618 38051855 -189472723 + L1ME3A LINE L1 4495 4729 -1486 * 6862 28 0 0 chr3 38051847 38052666 -189471912 - L1PA3 LINE L1 -852 5294 4476 7160 20 0 1 chr3 38052666 38053496 -189471082 + L1PA3 LINE L1 5326 6155 0 31 0 0 0 chr3 38053496 38053527 -189471051 + AT_rich Low_complexity Low_complexity 1 31 0 260 216 112 9 chr3 38053616 38053732 -189470846 + L1ME3A LINE L1 5190 5317 -898 6042 210 30 24 chr3 38053775 38057142 -189467436 - L1MC1 LINE L1 0 6613 23 532 264 121 68 chr3 38057598 38057863 -189466715 - LTR33A LTR ERVL -242 281 3 378 262 77 37 chr3 38058926 38059212 -189465366 - MLT1G LTR MaLR -22 520 111 747 243 98 0 chr3 38059276 38059449 -189465129 + MER20 DNA MER1_type 30 219 0 336 274 60 17 chr3 38059449 38059561 -189465017 - MLT1G LTR MaLR -472 118 2 1458 59 134 4 chr3 38059648 38059886 -189464692 - L1MA1 LINE L1 0 6302 6034 277 344 85 67 chr3 38060704 38061035 -189463543 - L2 LINE L2 -2 3270 2934 1135 234 86 70 chr3 38061661 38062160 -189462418 + L1ME3A LINE L1 5718 6224 -15 273 346 40 0 chr3 38062988 38063089 -189461489 - Charlie8 DNA MER1_type -2310 107 3 314 295 141 26 chr3 38063090 38063246 -189461332 - MIR SINE MIR -59 203 30 22 56 0 0 chr3 38064100 38064136 -189460442 + AT_rich Low_complexity Low_complexity 1 36 0 3411 98 4 41 chr3 38064714 38065254 -189459324 - L1MA1 LINE L1 -78 6224 5705 * 14693 170 21 11 chr3 38065251 38068773 -189455805 - L1 LINE L1 -1031 6534 2977 5484 125 0 4 chr3 38068787 38069597 -189454981 - L1PA11 LINE L1 -12 6162 5356 1782 120 87 95 chr3 38069597 38069795 -189454783 - THE1B LTR MaLR 0 364 169 1945 116 0 0 chr3 38069795 38070054 -189454524 - AluSg1 SINE Alu -50 259 1 1782 120 87 95 chr3 38070054 38070222 -189454356 - THE1B LTR MaLR -195 169 1 3338 83 0 0 chr3 38070222 38070656 -189453922 - THE1B-int LTR MaLR 0 1580 1147 1712 193 66 30 chr3 38070656 38071019 -189453559 + MSTA LTR MaLR 53 428 0 10335 172 35 19 chr3 38071019 38072837 -189451741 - L1 LINE L1 -5710 1855 8 446 264 61 71 chr3 38072936 38073011 -189451567 - L1M4 LINE L1 -2301 3845 3771 18071 68 6 7 chr3 38073011 38076236 -189448342 - L1PA7 LINE L1 -3 6151 2931 446 264 61 71 chr3 38076236 38076455 -189448123 - L1M4 LINE L1 -2375 3771 3554 284 297 68 20 chr3 38076491 38076639 -189447939 + MIR SINE MIR 91 245 -17 21 0 0 0 chr3 38076744 38076765 -189447813 + AT_rich Low_complexity Low_complexity 1 21 0 236 200 60 0 chr3 38078063 38078113 -189446465 + MIR SINE MIR 95 147 -115 417 398 64 28 chr3 38079554 38079989 -189444589 - L2 LINE L2 0 3272 2822 237 357 52 29 chr3 38080108 38080318 -189444260 - L2 LINE L2 -624 2690 2476 524 351 74 27 chr3 38080627 38081024 -189443554 - L2 LINE L2 -181 3091 2670 666 252 32 76 chr3 38081084 38081334 -189443244 + Charlie8 DNA MER1_type 33 271 -2146 2309 264 144 30 chr3 38081418 38082460 -189442118 + L2 LINE L2 1529 2689 -625 583 261 72 6 chr3 38082476 38082656 -189441922 - L1MC4a LINE L1 -371 7437 7246 2020 117 18 96 chr3 38083004 38083198 -189441380 + THE1B LTR MaLR 1 151 -213 2065 127 0 0 chr3 38083198 38083525 -189441053 + AluSq SINE Alu 1 327 0 2020 117 18 96 chr3 38083525 38083724 -189440854 + THE1B LTR MaLR 151 364 0 330 321 43 63 chr3 38083728 38084030 -189440548 + LTR16C LTR ERVL 181 476 -15 186 262 226 0 chr3 38084238 38084322 -189440256 - L2 LINE L2 -1481 1833 1731 270 294 0 46 chr3 38084456 38084565 -189440013 - L2 LINE L2 -300 2972 2869 281 244 30 30 chr3 38084728 38084863 -189439715 - L1MC5 LINE L1 -319 7642 7508 2201 117 0 0 chr3 38085861 38086160 -189438418 + AluSx SINE Alu 1 299 -13 449 311 88 10 chr3 38086661 38086854 -189437724 - MLT1I LTR MaLR -7 402 195 536 219 9 9 chr3 38086867 38086981 -189437597 + FAM SINE Alu 44 157 -28 1096 83 24 0 chr3 38086995 38087109 -189437469 + (GGAAA)n Simple_repeat Simple_repeat 1 288 0 1096 83 24 0 chr3 38087109 38087277 -189437301 + (GGAAA)n Simple_repeat Simple_repeat 4 175 0 263 211 18 0 chr3 38087306 38087363 -189437215 - MLT1I LTR MaLR -232 177 120 29 0 0 0 chr3 38087493 38087522 -189437056 + AT_rich Low_complexity Low_complexity 1 29 0 1068 198 24 5 chr3 38087546 38087753 -189436825 - MER2 DNA MER2_type -134 211 1 998 261 149 36 chr3 38087861 38088190 -189436388 + LTR16C LTR ERVL 126 491 0 22 0 0 0 chr3 38090033 38090055 -189434523 + AT_rich Low_complexity Low_complexity 1 22 0 1455 191 14 3 chr3 38090089 38090371 -189434207 - L1PA15 LINE L1 -2 6163 5879 336 276 50 45 chr3 38090934 38091155 -189433423 + L1MC5 LINE L1 7687 7908 -53 686 221 82 57 chr3 38091349 38091629 -189432949 + L1MC4 LINE L1 7189 7475 -567 30 27 0 0 chr3 38092461 38092498 -189432080 + AT_rich Low_complexity Low_complexity 1 37 0 24 32 0 0 chr3 38092582 38092613 -189431965 + AT_rich Low_complexity Low_complexity 1 31 0 432 344 36 32 chr3 38092857 38093110 -189431468 + L1M4 LINE L1 4024 4277 -1869 313 274 174 48 chr3 38093291 38093670 -189430908 + L1M4 LINE L1 4601 5027 -1119 32 26 0 0 chr3 38093735 38093774 -189430804 + AT_rich Low_complexity Low_complexity 1 39 0 465 331 35 98 chr3 38095083 38095454 -189429124 + L2 LINE L2 2712 3059 -213 2519 116 5 5 chr3 38095555 38095925 -189428653 + THE1C LTR MaLR 6 375 0 348 305 30 23 chr3 38095929 38096060 -189428518 + L2 LINE L2 3141 3272 0 228 215 120 95 chr3 38096105 38096263 -189428315 + L1ME4a LINE L1 5851 6012 -109 223 346 99 0 chr3 38096455 38096556 -189428022 + MIR SINE MIR 40 150 -112 21 0 0 0 chr3 38097855 38097876 -189426702 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr3 38098713 38098739 -189425839 + (T)n Simple_repeat Simple_repeat 1 26 0 7611 28 0 0 chr3 38098761 38099743 -189424835 - L1PA2 LINE L1 0 6155 5175 15599 32 0 0 chr3 38099745 38101614 -189422964 + L1PA2 LINE L1 3300 5168 -978 1650 206 34 23 chr3 38102937 38103321 -189421257 + MLT1B LTR MaLR 1 388 -2 699 337 55 24 chr3 38103437 38103852 -189420726 - L2 LINE L2 -43 3270 2843 496 327 192 15 chr3 38103960 38105024 -189419554 + L2 LINE L2 1978 3250 -63 643 313 35 10 chr3 38105636 38105946 -189418632 + L1M4 LINE L1 2387 2704 -3442 246 244 85 0 chr3 38106134 38106216 -189418362 + Charlie8 DNA MER1_type 33 121 -2296 2378 214 20 20 chr3 38106217 38106806 -189417772 - L1MA10 LINE L1 -782 5364 4776 * 4745 187 18 9 chr3 38106803 38107588 -189416990 + L1MA10 LINE L1 5376 6172 -162 249 83 0 0 chr3 38107588 38107624 -189416954 + (TAA)n Simple_repeat Simple_repeat 2 37 0 4745 187 18 9 chr3 38107624 38107789 -189416789 + L1MA10 LINE L1 6172 6334 0 246 289 60 60 chr3 38107792 38107958 -189416620 + Charlie8 DNA MER1_type 97 262 -2155 2318 285 35 21 chr3 38108089 38109089 -189415489 - L1ME3A LINE L1 -10 6229 5216 1007 241 127 94 chr3 38109362 38109911 -189414667 - MLT1F1 LTR MaLR 0 567 2 2338 297 60 40 chr3 38109912 38110164 -189414414 - L1ME3A LINE L1 -2038 4177 3932 2460 77 0 0 chr3 38110164 38110474 -189414104 - AluY SINE Alu -1 310 1 2338 297 60 40 chr3 38110474 38111893 -189412685 - L1ME3A LINE L1 -2283 3932 2472 1820 212 45 35 chr3 38111891 38113609 -189410969 - L1MB8 LINE L1 0 6989 5065 * 2271 208 13 51 chr3 38113628 38114153 -189410425 - L1MB8 LINE L1 -6346 513 9 636 314 77 17 chr3 38114165 38114774 -189409804 - L1MEc LINE L1 -3733 2482 1877 1354 191 4 40 chr3 38114800 38115077 -189409501 + AluJo SINE Alu 29 295 -17 568 313 48 33 chr3 38115120 38115638 -189408940 - L1MEc LINE L1 -4641 1755 1230 387 224 24 102 chr3 38115663 38115793 -189408785 - MLT1G LTR MaLR 0 590 419 19169 49 1 2 chr3 38115980 38118428 -189406150 + L1P LINE L1 1176 3622 -2524 646 240 120 35 chr3 38168430 38168795 -189355783 - LTR8A LTR ERV1 -103 609 222 193 258 162 42 chr3 38169613 38169780 -189354798 - L2 LINE L2 -656 2658 2472 316 171 0 79 chr3 38169789 38169865 -189354713 + FLAM_A SINE Alu 64 133 0 400 181 21 43 chr3 38169934 38170028 -189354550 + AluJo SINE Alu 56 147 -165 245 263 237 29 chr3 38170109 38170387 -189354191 - L2 LINE L2 -936 2378 2043 6901 86 24 5 chr3 38170732 38171786 -189352792 + MER61-int LTR ERV1 2095 3168 -2049 2353 96 0 3 chr3 38172596 38172898 -189351680 - AluSx SINE Alu -11 301 1 2512 27 7 3 chr3 38173279 38173577 -189351001 + AluY SINE Alu 1 299 -12 279 203 0 0 chr3 38173626 38173690 -189350888 + CT-rich Low_complexity Low_complexity 4 67 0 186 43 0 0 chr3 38174455 38174478 -189350100 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1036 91 0 0 chr3 38174479 38174611 -189349967 - AluY SINE Alu -179 132 1 32 43 0 0 chr3 38175728 38175774 -189348804 + AT_rich Low_complexity Low_complexity 1 46 0 1713 301 146 22 chr3 38176103 38176950 -189347628 + L2 LINE L2 1957 2908 -406 777 298 109 28 chr3 38177107 38177500 -189347078 + L2 LINE L2 2889 3313 0 282 326 136 20 chr3 38177855 38178002 -189346576 - L2 LINE L2 -6 3266 3103 333 177 94 31 chr3 38178177 38178273 -189346305 - MER94 DNA DNA -9 125 24 278 193 0 12 chr3 38179406 38179489 -189345089 + (TA)n Simple_repeat Simple_repeat 1 82 0 643 186 51 17 chr3 38179492 38179610 -189344968 - FLAM_A SINE Alu -11 122 1 2729 231 56 29 chr3 38180363 38181183 -189343395 + MER21B LTR ERV1 1 842 -21 2496 43 0 7 chr3 38181359 38181659 -189342919 + AluY SINE Alu 1 298 -13 308 303 7 14 chr3 38181712 38181854 -189342724 - L1ME3A LINE L1 -213 5957 5817 318 319 30 48 chr3 38182369 38182450 -189342128 - L1MEd LINE L1 -5939 180 99 240 35 0 0 chr3 38182450 38182479 -189342099 + (CA)n Simple_repeat Simple_repeat 2 30 0 318 319 30 48 chr3 38182479 38182504 -189342074 - L1MEd LINE L1 -6020 99 75 2313 86 6 49 chr3 38182504 38182830 -189341748 - AluSp SINE Alu -1 312 1 318 319 30 48 chr3 38182830 38182888 -189341690 - L1MEd LINE L1 -6044 75 18 21 0 0 0 chr3 38182983 38183004 -189341574 + AT_rich Low_complexity Low_complexity 1 21 0 28 71 0 0 chr3 38183033 38183089 -189341489 + AT_rich Low_complexity Low_complexity 1 56 0 30 52 0 39 chr3 38183375 38183452 -189341126 + AT_rich Low_complexity Low_complexity 1 74 0 2776 177 28 16 chr3 38183875 38184456 -189340122 + L1MB5 LINE L1 5579 6166 -8 2385 58 0 7 chr3 38184458 38184751 -189339827 + AluY SINE Alu 1 291 -20 336 127 0 0 chr3 38184800 38184855 -189339723 - MER103 DNA DNA -52 114 60 1631 142 20 116 chr3 38185095 38185439 -189339139 + AluYb8 SINE Alu 1 311 -7 516 289 65 15 chr3 38185622 38185823 -189338755 - LTR16A LTR ERVL -6 444 234 25 31 0 0 chr3 38187964 38187996 -189336582 + AT_rich Low_complexity Low_complexity 1 32 0 4209 43 8 0 chr3 38187996 38188509 -189336069 - L1PA5 LINE L1 -8 6146 5630 4222 66 12 0 chr3 38188509 38189193 -189335385 + L1M1 LINE L1 4809 5497 -689 752 318 54 8 chr3 38189193 38189435 -189335143 + MIR SINE MIR 8 260 -2 213 295 16 57 chr3 38189600 38189722 -189334856 - L2 LINE L2 -511 2803 2687 196 77 51 0 chr3 38189793 38189832 -189334746 + (TG)n Simple_repeat Simple_repeat 1 41 0 855 320 59 5 chr3 38189886 38190261 -189334317 - MLT1J LTR MaLR -114 397 3 426 304 87 69 chr3 38190331 38190475 -189334103 - L2 LINE L2 -836 2478 2338 2321 73 10 7 chr3 38190475 38190775 -189333803 + AluY SINE Alu 1 301 -10 426 304 87 69 chr3 38190775 38190919 -189333659 - L2 LINE L2 -976 2338 2185 903 236 9 24 chr3 38191640 38191852 -189332726 + MER58A DNA MER1_type 15 223 -1 889 171 5 62 chr3 38192924 38193117 -189331461 + MER3 DNA MER1_type 27 208 -1 541 144 0 31 chr3 38193467 38193564 -189331014 + L1MC1 LINE L1 6231 6324 -9 183 80 0 0 chr3 38193569 38193594 -189330984 + (CAAT)n Simple_repeat Simple_repeat 2 26 0 21 0 0 0 chr3 38193665 38193686 -189330892 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr3 38194551 38194586 -189329992 + AT_rich Low_complexity Low_complexity 1 35 0 2752 203 24 70 chr3 38194934 38195149 -189329429 + MER72 LTR ERV1 1 224 -498 2089 136 3 0 chr3 38195149 38195451 -189329127 - AluSx SINE Alu -9 303 1 2752 203 24 70 chr3 38195451 38195992 -189328586 + MER72 LTR ERV1 224 722 0 650 186 8 0 chr3 38196302 38196426 -189328152 + MLT1B LTR MaLR 1 125 -265 255 204 0 0 chr3 38196424 38196473 -189328105 + LTR28 LTR ERV1 9 57 -963 * 1781 159 28 60 chr3 38196445 38196880 -189327698 + MER61C LTR ERV1 14 434 0 1229 178 40 8 chr3 38196883 38197136 -189327442 + MLT1B LTR MaLR 127 387 -3 3233 131 103 21 chr3 38198104 38198675 -189325903 + LTR35 LTR ERV1 1 618 0 3249 133 101 21 chr3 38199436 38200008 -189324570 + LTR35 LTR ERV1 1 618 0 1729 206 141 84 chr3 38200089 38200775 -189323803 - MER50 LTR ERV1 0 734 10 2383 173 74 42 chr3 38201000 38201567 -189323011 + MER34C LTR ERV1 1 585 0 396 200 0 0 chr3 38202439 38202504 -189322074 - MER96 DNA MER1_type? 0 175 111 1004 187 28 11 chr3 38202517 38202699 -189321879 - MER58A DNA MER1_type -36 188 4 1949 133 28 0 chr3 38203003 38203289 -189321289 + AluSx SINE Alu 8 301 -11 186 315 161 35 chr3 38203412 38203555 -189321023 + L2 LINE L2 3112 3272 0 436 307 28 6 chr3 38203871 38204050 -189320528 + L1MC5 LINE L1 7744 7926 -35 182 170 0 21 chr3 38204184 38204231 -189320347 + (CA)n Simple_repeat Simple_repeat 2 47 0 225 193 36 12 chr3 38204251 38204334 -189320244 + (TA)n Simple_repeat Simple_repeat 1 85 0 2092 134 3 13 chr3 38204385 38204698 -189319880 - AluSx SINE Alu 0 312 3 460 275 136 42 chr3 38204879 38205115 -189319463 - MIR SINE MIR 0 262 5 399 247 43 0 chr3 38205309 38205402 -189319176 - MLT1I LTR MaLR -26 383 287 587 270 16 82 chr3 38206447 38206765 -189317813 - L1MD2 LINE L1 -13 6346 6050 350 225 0 12 chr3 38206807 38206887 -189317691 - MLT1L LTR MaLR -536 79 1 2152 113 0 0 chr3 38207929 38208244 -189316334 + AluSx SINE Alu 1 315 0 1320 290 53 27 chr3 38209481 38209970 -189314608 + MLT1H1 LTR MaLR 3 589 -1 779 236 133 0 chr3 38210047 38210242 -189314336 - MIR SINE MIR -25 237 17 1877 161 24 0 chr3 38210405 38210703 -189313875 + AluJo SINE Alu 1 305 -7 300 27 0 0 chr3 38211212 38211249 -189313329 + (TG)n Simple_repeat Simple_repeat 2 38 0 251 212 91 40 chr3 38211388 38211487 -189313091 - MLT1L LTR MaLR -4 611 508 191 313 61 61 chr3 38212348 38212447 -189312131 + MER5A DNA MER1_type 14 112 -77 * 228 256 47 101 chr3 38212374 38212503 -189312075 - MER5A DNA MER1_type -22 167 46 2167 73 7 18 chr3 38212505 38212826 -189311752 + AluY SINE Alu 1 318 0 23 0 0 0 chr3 38212926 38212949 -189311629 + AT_rich Low_complexity Low_complexity 1 23 0 434 267 106 81 chr3 38214640 38214962 -189309616 + MER102a DNA MER1_type 1 330 0 1853 253 30 24 chr3 38215357 38215852 -189308726 + LTR31 LTR ERV1 106 603 -16 471 305 14 7 chr3 38215996 38216137 -189308441 + MER97a DNA MER1_type? 2 143 -751 3208 239 21 14 chr3 38216138 38216896 -189307682 + L1MA1 LINE L1 15 777 -6788 * 15449 161 20 11 chr3 38216895 38222823 -189301755 + L1MA1 LINE L1 1731 7716 -5 24 0 0 0 chr3 38222824 38222848 -189301730 + AT_rich Low_complexity Low_complexity 1 24 0 506 197 0 63 chr3 38222848 38222975 -189301603 + MER97c DNA MER1_type? 131 249 -841 462 36 0 0 chr3 38222977 38223033 -189301545 + (TG)n Simple_repeat Simple_repeat 2 57 0 1434 241 45 9 chr3 38223037 38223369 -189301209 - MSTD LTR MaLR -12 384 41 778 266 5 41 chr3 38223372 38223590 -189300988 - MLT-int LTR MaLR -981 754 545 769 263 33 5 chr3 38223583 38223796 -189300782 - MSTD-int LTR MaLR -1515 220 2 * 1865 202 39 21 chr3 38223796 38224178 -189300400 - MSTD LTR MaLR -2 394 6 1341 227 71 6 chr3 38224183 38224536 -189300042 + MER97c DNA MER1_type? 244 619 -471 24 0 0 0 chr3 38224935 38224959 -189299619 + AT_rich Low_complexity Low_complexity 1 24 0 259 266 39 31 chr3 38224972 38225100 -189299478 + MER97c DNA MER1_type? 953 1081 -9 21 57 0 0 chr3 38225737 38225772 -189298806 + AT_rich Low_complexity Low_complexity 1 35 0 209 265 61 20 chr3 38226021 38226119 -189298459 + MIR SINE MIR 96 197 -65 310 252 81 49 chr3 38227139 38227262 -189297316 + MIR SINE MIR 14 140 -122 351 183 0 0 chr3 38227269 38227340 -189297238 + MER72 LTR ERV1 1 71 -651 333 252 81 49 chr3 38227433 38227556 -189297022 + MIR SINE MIR 14 140 -122 2869 200 21 65 chr3 38227563 38228318 -189296260 + MER72 LTR ERV1 1 722 0 1695 274 51 26 chr3 38228370 38228899 -189295679 - MLT1G LTR MaLR 0 590 49 401 297 38 32 chr3 38229010 38229195 -189295383 - MIR SINE MIR -30 232 47 1538 199 40 0 chr3 38229203 38229479 -189295099 + AluJo SINE Alu 1 287 -25 206 32 32 0 chr3 38229488 38229519 -189295059 + (CAA)n Simple_repeat Simple_repeat 1 32 0 376 214 62 27 chr3 38230008 38230120 -189294458 + MLT1L LTR MaLR 165 280 -335 1933 118 42 0 chr3 38230139 38230426 -189294152 - AluSx SINE Alu -12 300 2 1026 248 114 43 chr3 38230574 38230994 -189293584 + LTR16A1 LTR ERVL 8 457 0 1024 221 69 0 chr3 38231591 38231894 -189292684 + MER33 DNA MER1_type 1 324 0 718 254 91 35 chr3 38231996 38232447 -189292131 + Charlie7 DNA MER1_type 675 1223 -1389 367 278 208 43 chr3 38232573 38232828 -189291750 + MLT1J LTR MaLR 92 388 -123 202 150 75 0 chr3 38233823 38233863 -189290715 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 456 255 70 66 chr3 38234320 38234579 -189289999 - MLT1K LTR MaLR 0 588 329 231 281 61 0 chr3 38235145 38235227 -189289351 - MLT1L LTR MaLR -197 418 332 577 140 18 9 chr3 38235248 38235362 -189289216 + L1MC3 LINE L1 7669 7783 -2 262 257 134 89 chr3 38235443 38235622 -189288956 - MLT1L LTR MaLR -361 254 68 222 215 77 0 chr3 38235724 38235789 -189288789 + MIR SINE MIR 191 260 -2 278 315 34 72 chr3 38235933 38236168 -189288410 - L2 LINE L2 -785 2529 2304 204 294 0 0 chr3 38236255 38236306 -189288272 - L2 LINE L2 0 3313 3263 250 211 18 0 chr3 38236658 38236715 -189287863 + (TA)n Simple_repeat Simple_repeat 1 58 0 3450 194 18 14 chr3 38236804 38237569 -189287009 - L1MD1 LINE L1 0 6636 5869 23 0 0 0 chr3 38237573 38237596 -189286982 + AT_rich Low_complexity Low_complexity 1 23 0 2242 64 7 20 chr3 38237599 38237894 -189286684 - AluY SINE Alu -20 291 1 2069 136 60 16 chr3 38237895 38238277 -189286301 - L1MA9 LINE L1 0 6312 5914 1526 164 20 24 chr3 38238278 38238448 -189286130 + L1MA9 LINE L1 5612 5782 -530 387 0 0 0 chr3 38238448 38238491 -189286087 + (CA)n Simple_repeat Simple_repeat 2 44 0 1526 164 20 24 chr3 38238491 38238613 -189285965 + L1MA9 LINE L1 5782 5903 -409 8363 239 74 26 chr3 38238622 38239141 -189285437 - L1MD1 LINE L1 -743 5797 5305 324 48 0 0 chr3 38239141 38239183 -189285395 + (TG)n Simple_repeat Simple_repeat 1 42 0 8363 239 74 26 chr3 38239183 38239908 -189284670 - L1MD1 LINE L1 -1235 5305 4617 360 0 0 0 chr3 38239908 38239948 -189284630 + (TTTA)n Simple_repeat Simple_repeat 2 41 0 8363 239 74 26 chr3 38239948 38240537 -189284041 - L1MD1 LINE L1 -1923 4617 4058 2512 44 14 0 chr3 38240537 38240834 -189283744 - AluY SINE Alu -10 301 1 8363 239 74 26 chr3 38240834 38244575 -189280003 - L1MD1 LINE L1 -2482 4058 17 199 333 30 0 chr3 38244593 38244659 -189279919 - MIR SINE MIR -136 126 59 2355 100 3 0 chr3 38244815 38245124 -189279454 + AluSx SINE Alu 1 310 -2 388 241 12 0 chr3 38245771 38245854 -189278724 + MIR SINE MIR 71 154 -108 233 318 182 0 chr3 38248165 38248275 -189276303 - L2 LINE L2 -6 3266 3137 581 259 129 43 chr3 38248297 38248529 -189276049 + MIR SINE MIR 2 253 -9 569 219 66 141 chr3 38249292 38249471 -189275107 - MLT1H1 LTR MaLR -185 370 179 2059 122 16 3 chr3 38249471 38249774 -189274804 - AluY SINE Alu -4 307 1 569 219 66 141 chr3 38249774 38249792 -189274786 - MLT1H1 LTR MaLR -376 179 161 741 187 8 15 chr3 38249792 38249926 -189274652 - FLAM_A SINE Alu 0 133 1 569 219 66 141 chr3 38249926 38250074 -189274504 - MLT1H1 LTR MaLR -394 161 50 2329 106 0 0 chr3 38250563 38250865 -189273713 - AluSg SINE Alu -8 302 1 579 189 0 0 chr3 38251252 38251347 -189273231 - MER34 LTR ERV1 -447 95 1 567 248 30 8 chr3 38251396 38251529 -189273049 + MIR SINE MIR 21 156 -106 251 273 15 0 chr3 38251529 38251595 -189272983 + L1ME4a LINE L1 5973 6039 -82 1761 179 0 40 chr3 38252697 38253022 -189271556 - AluJo SINE Alu 0 312 1 360 236 73 79 chr3 38253600 38253765 -189270813 - L2 LINE L2 0 3313 3150 277 285 102 77 chr3 38254023 38254297 -189270281 - L2 LINE L2 -481 2833 2553 442 246 98 0 chr3 38254692 38254814 -189269764 + MER94 DNA DNA 1 134 0 352 274 197 17 chr3 38255089 38255206 -189269372 + MER5A DNA MER1_type 46 183 -6 270 220 51 59 chr3 38255215 38255405 -189269173 + MER112 DNA MER1_type 22 248 -12 406 79 26 0 chr3 38256972 38257048 -189267530 + (TA)n Simple_repeat Simple_repeat 2 79 0 2479 48 7 0 chr3 38257119 38257409 -189267169 - AluSc SINE Alu -17 292 1 320 231 50 99 chr3 38257463 38257584 -189266994 + MIR3 SINE MIR 82 196 -12 288 221 74 53 chr3 38259282 38259377 -189265201 - L2 LINE L2 -9 3263 3167 623 290 59 15 chr3 38259713 38259943 -189264635 + MIR SINE MIR 9 256 -6 412 345 36 7 chr3 38260094 38260233 -189264345 + L2 LINE L2 2944 3086 -186 185 139 28 28 chr3 38260675 38260711 -189263867 - L2 LINE L2 -501 2813 2778 226 306 149 0 chr3 38261332 38261453 -189263125 - MIR SINE MIR -4 258 120 189 107 0 0 chr3 38262304 38262332 -189262246 + (T)n Simple_repeat Simple_repeat 1 28 0 1272 275 65 84 chr3 38262404 38263081 -189261497 + MER115 DNA AcHobo 30 693 0 225 94 0 0 chr3 38263275 38263307 -189261271 + (T)n Simple_repeat Simple_repeat 1 32 0 525 322 130 0 chr3 38263791 38264021 -189260557 - MIR SINE MIR -1 261 2 367 228 9 53 chr3 38264397 38264511 -189260067 + MER69 DNA AcHobo 4 112 -1114 * 2229 163 84 46 chr3 38264494 38264919 -189259659 + MER69 DNA AcHobo 1938 2390 -136 1325 209 47 57 chr3 38264919 38265215 -189259363 - AluJo SINE Alu -9 293 1 2229 163 84 46 chr3 38265215 38265349 -189259229 + MER69 DNA AcHobo 2390 2518 -8 219 273 82 45 chr3 38265683 38265793 -189258785 + MIR3 SINE MIR 82 195 -13 22 0 0 0 chr3 38266704 38266726 -189257852 + AT_rich Low_complexity Low_complexity 1 22 0 397 256 192 0 chr3 38266948 38267073 -189257505 + MER5A DNA MER1_type 41 189 0 2339 98 0 25 chr3 38267390 38267708 -189256870 - AluSg SINE Alu 0 310 1 2415 57 0 0 chr3 38269079 38269384 -189255194 + AluY SINE Alu 1 305 0 2194 134 0 0 chr3 38270449 38270754 -189253824 - AluSq SINE Alu -8 305 1 2346 100 0 0 chr3 38271779 38272080 -189252498 + AluSg SINE Alu 7 307 -3 357 280 43 0 chr3 38272322 38272415 -189252163 - MIR SINE MIR -76 186 90 2318 105 0 3 chr3 38273033 38273339 -189251239 + AluSx SINE Alu 1 305 -7 2399 87 0 0 chr3 38273509 38273808 -189250770 + AluSc SINE Alu 1 299 -10 671 246 18 18 chr3 38275141 38275312 -189249266 - MER5B DNA MER1_type -6 172 2 226 328 64 16 chr3 38275313 38275438 -189249140 - MIR3 SINE MIR -48 160 30 721 207 132 0 chr3 38276240 38276414 -189248164 + MER3 DNA MER1_type 1 197 -12 464 268 246 43 chr3 38276779 38277108 -189247470 - L2 LINE L2 -10 3303 2908 1165 172 91 118 chr3 38277738 38278110 -189246468 + MLT1A1 LTR MaLR 1 362 -3 2191 122 0 3 chr3 38278154 38278457 -189246121 - AluSc SINE Alu -7 302 1 219 69 0 0 chr3 38278732 38278761 -189245817 + (T)n Simple_repeat Simple_repeat 1 29 0 278 261 43 22 chr3 38278869 38278961 -189245617 - MIR3 SINE MIR -21 187 94 264 345 124 0 chr3 38279906 38280019 -189244559 - MIR SINE MIR -121 141 15 332 338 71 0 chr3 38280298 38280452 -189244126 + MIR SINE MIR 94 258 -4 677 269 65 37 chr3 38280658 38280952 -189243626 - MER102a DNA MER1_type -6 324 23 204 150 25 0 chr3 38282453 38282493 -189242085 + A-rich Low_complexity Low_complexity 2 42 0 186 171 0 0 chr3 38282992 38283033 -189241545 + (CA)n Simple_repeat Simple_repeat 1 41 0 206 235 0 39 chr3 38283112 38283163 -189241415 + L2 LINE L2 3172 3220 -93 420 20 0 0 chr3 38283270 38283319 -189241259 + (TG)n Simple_repeat Simple_repeat 2 50 0 300 53 0 0 chr3 38283321 38283359 -189241219 - Alu SINE Alu -265 38 1 270 81 0 0 chr3 38283841 38283878 -189240700 + (TG)n Simple_repeat Simple_repeat 2 38 0 2509 75 0 0 chr3 38283901 38284207 -189240371 + AluY SINE Alu 1 306 -5 755 307 110 26 chr3 38284221 38284234 -189240344 - L1MC4a LINE L1 -1884 5924 5914 1128 270 97 41 chr3 38284234 38284727 -189239851 - LTR33 LTR ERVL 0 521 1 755 307 110 26 chr3 38284727 38285205 -189239373 - L1MC4a LINE L1 -1894 5914 5392 1730 157 75 3 chr3 38286354 38286647 -189237931 + MLT2C1 LTR ERVL 1 314 -83 2221 144 12 6 chr3 38287506 38287847 -189236731 + MER2 DNA MER2_type 1 343 -1 260 219 0 14 chr3 38288974 38289047 -189235531 + CT-rich Low_complexity Low_complexity 4 75 0 926 191 17 23 chr3 38289492 38289665 -189234913 + MER5B DNA MER1_type 5 176 -2 423 275 67 8 chr3 38290768 38290888 -189233690 - L2 LINE L2 0 3313 3187 204 232 29 72 chr3 38291152 38291221 -189233357 + L2 LINE L2 3203 3268 -4 2239 121 0 0 chr3 38292606 38292904 -189231674 - AluSx SINE Alu -14 298 1 207 0 0 0 chr3 38292938 38292961 -189231617 + (TC)n Simple_repeat Simple_repeat 1 23 0 895 334 101 5 chr3 38293432 38293866 -189230712 + L3 LINE CR1 1077 1552 -25 502 297 138 25 chr3 38294186 38294583 -189229995 + LTR16A1 LTR ERVL 16 457 0 270 0 0 0 chr3 38294680 38294710 -189229868 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 28 48 0 0 chr3 38294770 38294812 -189229766 + AT_rich Low_complexity Low_complexity 1 42 0 2024 113 0 7 chr3 38294812 38295096 -189229482 - AluSg SINE Alu -28 282 1 387 0 0 0 chr3 38295539 38295582 -189228996 + (CA)n Simple_repeat Simple_repeat 2 44 0 983 175 73 6 chr3 38297824 38298001 -189226577 + MER5A DNA MER1_type 1 189 0 210 174 0 0 chr3 38298512 38298558 -189226020 + (TCCA)n Simple_repeat Simple_repeat 3 48 0 386 307 101 26 chr3 38298727 38298916 -189225662 - L1MC/D LINE L1 -2051 5757 5555 2159 123 10 0 chr3 38299353 38299653 -189224925 - AluSx SINE Alu -9 303 1 2376 110 0 0 chr3 38300370 38300671 -189223907 - AluSx SINE Alu -11 301 1 532 335 20 5 chr3 38300909 38301112 -189223466 - MIR SINE MIR 0 262 57 185 207 0 17 chr3 38301150 38301208 -189223370 + CT-rich Low_complexity Low_complexity 4 60 0 668 292 96 5 chr3 38302073 38302282 -189222296 + MIR SINE MIR 1 228 -34 273 209 116 0 chr3 38302840 38302926 -189221652 + MIR SINE MIR 145 240 -22 459 228 215 0 chr3 38303013 38303162 -189221416 + MER5A DNA MER1_type 9 189 0 201 308 26 13 chr3 38304154 38304232 -189220346 - MIR3 SINE MIR -54 154 76 591 280 102 22 chr3 38304550 38304775 -189219803 + MIR SINE MIR 16 258 -4 945 185 56 0 chr3 38305107 38305285 -189219293 - MER58A DNA MER1_type 0 224 37 189 74 0 0 chr3 38305512 38305539 -189219039 + (TTG)n Simple_repeat Simple_repeat 1 27 0 759 201 52 35 chr3 38307425 38307599 -189216979 - MER5B DNA MER1_type -1 177 1 318 348 93 42 chr3 38308572 38308980 -189215598 + L3 LINE CR1 712 1140 -437 210 374 34 39 chr3 38309095 38309301 -189215277 + L3 LINE CR1 1178 1382 -195 181 298 160 11 chr3 38309409 38309503 -189215075 + L3 LINE CR1 1455 1562 -15 477 230 191 7 chr3 38310026 38310178 -189214400 - MER5A DNA MER1_type -7 182 3 201 214 0 36 chr3 38310320 38310376 -189214202 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 289 247 201 41 chr3 38310377 38310601 -189213977 - L1MC4 LINE L1 -163 7674 7390 455 303 20 50 chr3 38310762 38310960 -189213618 + L1ME3A LINE L1 5962 6153 -17 1653 164 8 4 chr3 38311131 38311393 -189213185 - AluJo SINE Alu -39 273 11 258 288 36 36 chr3 38312486 38312597 -189211981 + MIR SINE MIR 120 230 -32 1118 189 51 18 chr3 38312891 38313290 -189211288 - Charlie4a DNA MER1_type -18 490 7 1443 151 50 47 chr3 38313777 38314055 -189210523 - AluJo SINE Alu -33 279 1 604 260 33 54 chr3 38314109 38314351 -189210227 + MIR SINE MIR 9 245 -17 976 195 73 24 chr3 38315047 38315252 -189209326 - MER58C DNA MER1_type 0 215 1 242 321 9 47 chr3 38315297 38315403 -189209175 - L2 LINE L2 -2 3270 3169 1454 181 35 3 chr3 38316115 38316403 -189208175 + AluSg SINE Alu 1 297 -13 4792 107 10 3 chr3 38316414 38317022 -189207556 - LTR9 LTR ERV1 0 612 1 187 296 0 0 chr3 38317497 38317551 -189207027 + L2 LINE L2 3258 3311 -2 183 240 240 13 chr3 38318186 38318261 -189206317 + L2 LINE L2 3168 3259 -13 234 303 172 14 chr3 38318264 38318409 -189206169 - L2 LINE L2 -5 3267 3100 204 361 76 8 chr3 38318507 38318626 -189205952 - L2 LINE L2 -266 3047 2921 2229 110 7 0 chr3 38322513 38322804 -189201774 - AluSg SINE Alu -17 293 1 2871 242 52 36 chr3 38322821 38323734 -189200844 - L1MC4a LINE L1 0 7808 6882 2468 70 0 3 chr3 38325386 38325688 -189198890 + AluY SINE Alu 2 302 -9 391 223 36 27 chr3 38326728 38326840 -189197738 - MIR SINE MIR -41 221 109 2047 98 0 0 chr3 38326978 38327242 -189197336 + AluSg1 SINE Alu 14 277 -32 370 269 77 104 chr3 38327525 38327785 -189196793 - L2 LINE L2 0 3313 3061 189 0 0 0 chr3 38328280 38328301 -189196277 + (A)n Simple_repeat Simple_repeat 1 21 0 1073 204 133 18 chr3 38328916 38329195 -189195383 - LTR16C LTR ERVL 0 491 181 315 191 59 15 chr3 38330196 38330264 -189194314 + MIR3 SINE MIR 110 180 -28 341 296 72 3 chr3 38330370 38330617 -189193961 + MER5C DNA MER1_type 1 323 -1 1395 260 56 40 chr3 38332532 38332982 -189191596 - LTR16A1 LTR ERVL 0 457 1 284 260 32 84 chr3 38333269 38333423 -189191155 - L2 LINE L2 -8 3305 3160 255 61 0 0 chr3 38334023 38334056 -189190522 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 262 335 55 66 chr3 38334056 38334313 -189190265 - L2 LINE L2 -13 3259 3006 244 185 0 62 chr3 38334435 38334500 -189190078 - MER106A DNA MER1_type 0 236 176 794 184 22 0 chr3 38334506 38334642 -189189936 - FLAM_C SINE Alu -3 140 2 1891 167 50 30 chr3 38334682 38335083 -189189495 - L1MB3 LINE L1 -2 6181 5773 594 190 25 0 chr3 38335085 38335206 -189189372 - MER106A DNA MER1_type -112 124 1 263 250 174 11 chr3 38335216 38335308 -189189270 + L2 LINE L2 3158 3264 -8 2188 161 17 27 chr3 38337762 38338172 -189186406 + L1MC1 LINE L1 5908 6313 -20 246 125 0 0 chr3 38339029 38339077 -189185501 + (TA)n Simple_repeat Simple_repeat 1 48 0 289 241 121 0 chr3 38339877 38339960 -189184618 + Charlie8 DNA MER1_type 46 138 -2279 225 0 0 0 chr3 38341371 38341396 -189183182 + (A)n Simple_repeat Simple_repeat 1 25 0 1292 159 9 40 chr3 38341876 38342102 -189182476 - MER20 DNA MER1_type 0 219 1 460 181 12 0 chr3 38342190 38342273 -189182305 + MIR SINE MIR 61 144 -118 340 293 120 0 chr3 38342573 38342706 -189181872 - MIR SINE MIR -73 189 41 632 238 153 15 chr3 38343277 38343479 -189181099 - MIR SINE MIR -2 260 31 203 147 0 0 chr3 38344371 38344405 -189180173 + (TC)n Simple_repeat Simple_repeat 2 35 0 351 0 0 0 chr3 38344405 38344444 -189180134 + (CA)n Simple_repeat Simple_repeat 2 40 0 700 288 60 26 chr3 38344615 38344848 -189179730 + MIR SINE MIR 6 246 -16 219 269 97 21 chr3 38345341 38345434 -189179144 - MIR SINE MIR -76 186 87 181 404 0 0 chr3 38345650 38345707 -189178871 - L2 LINE L2 -93 3179 3123 674 212 8 8 chr3 38345917 38346049 -189178529 - MLT1D LTR MaLR -1 466 335 734 219 44 44 chr3 38346052 38346235 -189178343 - MLT1D LTR MaLR -322 183 1 203 258 0 97 chr3 38346748 38346810 -189177768 + MIR SINE MIR 43 98 -110 1171 255 94 61 chr3 38346821 38347330 -189177248 - MLT1H1 LTR MaLR -29 526 1 181 277 145 12 chr3 38347333 38347416 -189177162 + MIR3 SINE MIR 103 196 -12 224 163 20 0 chr3 38347585 38347634 -189176944 + (TG)n Simple_repeat Simple_repeat 1 50 0 645 235 86 23 chr3 38348728 38348948 -189175630 + MER46C DNA MER2_type 1 234 -104 294 186 107 0 chr3 38348948 38349021 -189175557 + LTR48B LTR ERV1 1 43 -601 619 217 50 23 chr3 38349031 38349303 -189175275 + LTR48 LTR ERV1 186 619 -168 293 53 26 0 chr3 38349296 38349334 -189175244 - MER4D LTR ERV1 -38 865 827 * 4346 152 25 51 chr3 38349335 38350170 -189174408 - MER4D LTR ERV1 -50 853 41 437 244 47 47 chr3 38350170 38350297 -189174281 + LTR8 LTR ERV1 1 127 -564 * 1820 192 66 70 chr3 38350290 38350790 -189173788 + LTR8A LTR ERV1 230 727 0 785 140 51 73 chr3 38350834 38351012 -189173566 + LTR48 LTR ERV1 602 775 -12 216 0 0 0 chr3 38351109 38351133 -189173445 + (TA)n Simple_repeat Simple_repeat 2 25 0 591 143 45 9 chr3 38351180 38351292 -189173286 - MER34B LTR ERV1 -3 562 447 441 223 77 46 chr3 38351296 38351426 -189173152 + LTR39 LTR ERV1 565 698 -85 * 2291 140 71 15 chr3 38351423 38351831 -189172747 - MER34C LTR ERV1 -123 462 32 4169 193 38 7 chr3 38352559 38353311 -189171267 + LTR39 LTR ERV1 1 776 -7 3186 114 47 8 chr3 38353311 38353803 -189170775 + MER9 LTR ERVK 1 511 0 2368 152 28 21 chr3 38354094 38354523 -189170055 + MSTB1 LTR MaLR 1 432 0 1224 182 89 34 chr3 38355479 38355898 -189168680 + MER39B LTR ERV1 1 553 -154 1884 198 77 81 chr3 38355898 38356454 -189168124 - MLT2B3 LTR ERVL 0 554 1 1224 182 89 34 chr3 38356454 38356619 -189167959 + MER39B LTR ERV1 553 707 0 403 324 138 28 chr3 38356675 38357002 -189167576 - L1ME LINE L1 -433 5733 5371 1241 237 116 15 chr3 38357043 38357448 -189167130 - MER39 LTR ERV1 0 707 262 423 212 68 61 chr3 38357427 38357559 -189167019 - MER39 LTR ERV1 -574 133 1 * 1241 208 39 48 chr3 38357654 38358010 -189166568 - MER39 LTR ERV1 -30 677 325 24 32 0 0 chr3 38358677 38358708 -189165870 + AT_rich Low_complexity Low_complexity 1 31 0 274 267 69 22 chr3 38359016 38359159 -189165419 - L1ME LINE L1 -292 5874 5726 460 195 25 17 chr3 38359488 38359606 -189164972 + L1ME LINE L1 4639 4757 -1389 811 155 5 77 chr3 38359695 38359750 -189164828 - MER67C LTR ERV1 -20 690 633 2047 139 3 13 chr3 38359750 38360059 -189164519 + AluSx SINE Alu 1 306 -6 811 155 5 77 chr3 38360059 38360210 -189164368 - MER67C LTR ERV1 -77 633 499 757 236 88 36 chr3 38360211 38360575 -189164003 - MER67C LTR ERV1 -324 386 4 1272 209 56 17 chr3 38360588 38361130 -189163448 + L1ME LINE L1 4873 5437 -727 6134 183 37 20 chr3 38361138 38361353 -189163225 + L1M4c LINE L1 21 231 -6153 2200 147 0 12 chr3 38361353 38361694 -189162884 + MER1B DNA MER1_type 1 337 0 6134 183 37 20 chr3 38361694 38362809 -189161769 + L1M4c LINE L1 231 1373 -5011 1280 219 121 14 chr3 38362806 38363020 -189161558 + L1MD3 LINE L1 6887 7077 -918 * 2213 102 0 20 chr3 38363020 38363325 -189161253 + AluSg SINE Alu 1 299 -11 1280 219 121 14 chr3 38363325 38363466 -189161112 + L1MD3 LINE L1 7077 7280 -715 317 197 14 0 chr3 38363467 38363538 -189161040 + MLT1F1 LTR MaLR 3 74 -493 634 161 0 8 chr3 38363541 38363659 -189160919 + L1MD3 LINE L1 7374 7490 -505 2095 229 16 63 chr3 38363680 38364300 -189160278 - L1MEc LINE L1 -5754 642 52 23 54 0 0 chr3 38364445 38364482 -189160096 + AT_rich Low_complexity Low_complexity 1 37 0 2116 86 0 4 chr3 38367210 38367477 -189157101 + AluY SINE Alu 1 266 -45 23 33 0 0 chr3 38367755 38367785 -189156793 + AT_rich Low_complexity Low_complexity 1 30 0 236 350 29 44 chr3 38367876 38368013 -189156565 - L2 LINE L2 -213 3059 2925 246 183 0 99 chr3 38368262 38368333 -189156245 + MER110A LTR ERV1 102 165 -303 508 271 127 0 chr3 38368385 38368606 -189155972 + MER110 LTR ERV1 148 396 -95 999 298 57 51 chr3 38368692 38369198 -189155380 - L2 LINE L2 -554 2760 2252 781 295 45 8 chr3 38369444 38369688 -189154890 + MIR SINE MIR 7 259 -3 830 285 100 21 chr3 38371032 38371421 -189153157 + LTR16C LTR ERVL 71 490 -1 2451 299 70 17 chr3 38371758 38373074 -189151504 + L2 LINE L2 1921 3313 0 216 0 0 0 chr3 38373610 38373634 -189150944 + (CA)n Simple_repeat Simple_repeat 2 25 0 318 253 22 22 chr3 38374193 38374284 -189150294 - L1MC4 LINE L1 -1334 6708 6618 302 311 0 19 chr3 38374210 38374316 -189150262 + L1MC4 LINE L1 6615 6718 -1324 * 306 125 0 0 chr3 38374520 38374568 -189150010 + (TA)n Simple_repeat Simple_repeat 1 48 0 1202 147 5 11 chr3 38374837 38375027 -189149551 - MER5A DNA MER1_type 0 189 1 403 286 112 0 chr3 38375678 38375839 -189148739 - MIR SINE MIR 0 262 84 24 67 0 0 chr3 38377803 38377848 -189146730 + AT_rich Low_complexity Low_complexity 1 45 0 210 368 0 0 chr3 38377943 38378019 -189146559 + (TG)n Simple_repeat Simple_repeat 2 77 0 1623 178 64 0 chr3 38379903 38380184 -189144394 + AluSx SINE Alu 1 299 -13 921 178 157 4 chr3 38380189 38380425 -189144153 - MER5C DNA MER1_type -1 323 52 587 81 12 0 chr3 38380705 38380791 -189143787 + (TTCC)n Simple_repeat Simple_repeat 2 88 0 208 156 0 22 chr3 38380796 38380841 -189143737 + CT-rich Low_complexity Low_complexity 2 45 0 1264 203 81 12 chr3 38382480 38382815 -189141763 + L1ME1 LINE L1 5686 6043 -123 420 262 33 0 chr3 38383256 38383378 -189141200 - MER94 DNA DNA 0 134 9 337 271 119 13 chr3 38383444 38383595 -189140983 + MIR SINE MIR 81 247 -15 24 53 0 0 chr3 38383602 38383640 -189140938 + AT_rich Low_complexity Low_complexity 1 38 0 222 330 37 18 chr3 38384227 38384336 -189140242 + MER5A DNA MER1_type 69 179 -10 392 321 52 24 chr3 38385344 38385556 -189139022 + MER20 DNA MER1_type 1 218 -1 1058 209 40 8 chr3 38387860 38388113 -189136465 - MLT1B LTR MaLR -3 387 127 1781 159 28 60 chr3 38388116 38388551 -189136027 - MER61C LTR ERV1 0 434 14 255 204 0 0 chr3 38388523 38388572 -189136006 - LTR28 LTR ERV1 -963 57 9 * 650 186 8 0 chr3 38388570 38388694 -189135884 - MLT1B LTR MaLR -265 125 1 2752 203 24 70 chr3 38389004 38389545 -189135033 - MER72 LTR ERV1 0 722 224 2089 136 3 0 chr3 38389545 38389847 -189134731 + AluSx SINE Alu 1 303 -9 2752 203 24 70 chr3 38389847 38390062 -189134516 - MER72 LTR ERV1 -498 224 1 22 0 0 0 chr3 38390363 38390385 -189134193 + AT_rich Low_complexity Low_complexity 1 22 0 251 213 3 14 chr3 38391746 38391835 -189132743 - L1M LINE L1 -765 5381 5293 505 131 46 19 chr3 38391940 38392199 -189132379 + (TA)n Simple_repeat Simple_repeat 1 266 0 28 0 0 0 chr3 38392222 38392250 -189132328 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr3 38392250 38392279 -189132299 + (TG)n Simple_repeat Simple_repeat 2 30 0 388 337 124 8 chr3 38392346 38392613 -189131965 - L1 LINE L1 -1112 5034 4737 1228 249 159 25 chr3 38392825 38393334 -189131244 + MLT1G LTR MaLR 14 590 0 300 336 72 54 chr3 38393346 38393774 -189130804 - L1 LINE L1 -1663 4483 4048 21 0 0 0 chr3 38394785 38394806 -189129772 + AT_rich Low_complexity Low_complexity 1 21 0 712 216 59 40 chr3 38394899 38395121 -189129457 + MLT1I LTR MaLR 137 362 -47 1722 170 0 11 chr3 38395513 38395790 -189128788 + AluJo SINE Alu 26 299 -13 788 200 53 6 chr3 38395790 38395960 -189128618 - MER58A DNA MER1_type -29 195 18 222 282 200 9 chr3 38396101 38396211 -189128367 + MIR SINE MIR 119 249 -13 258 193 0 0 chr3 38396986 38397043 -189127535 + C-rich Low_complexity Low_complexity 5 61 0 1657 172 19 16 chr3 38397043 38397351 -189127227 - AluSx SINE Alu -3 309 1 207 370 7 44 chr3 38397366 38397501 -189127077 + MER5A DNA MER1_type 56 185 -4 197 271 71 14 chr3 38398234 38398304 -189126274 + L2 LINE L2 108 181 -3133 195 42 0 0 chr3 38398666 38398690 -189125888 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 304 250 23 0 chr3 38401320 38401408 -189123170 - MER94 DNA DNA -41 93 4 26 0 0 0 chr3 38404043 38404069 -189120509 + AT_rich Low_complexity Low_complexity 1 26 0 299 237 0 0 chr3 38406754 38406813 -189117765 + L2 LINE L2 3255 3313 0 261 329 86 14 chr3 38407312 38407452 -189117126 + MIR SINE MIR 98 247 -15 1195 240 55 44 chr3 38407476 38407860 -189116718 + MLT1H LTR MaLR 1 388 -161 231 281 170 33 chr3 38408990 38409143 -189115435 - MIR SINE MIR -10 252 79 361 194 0 74 chr3 38409572 38409680 -189114898 + MIR SINE MIR 152 251 -11 201 62 94 0 chr3 38412964 38412996 -189111582 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 3234 108 98 10 chr3 38413537 38414131 -189110447 - L1MA1 LINE L1 0 6302 5657 673 163 78 114 chr3 38414215 38414275 -189110303 - Tigger5 DNA MER2_type -3 2320 2259 2085 101 0 18 chr3 38414275 38414561 -189110017 + AluY SINE Alu 1 281 -30 673 163 78 114 chr3 38414561 38414745 -189109833 - Tigger5 DNA MER2_type -64 2259 2085 251 182 73 18 chr3 38416745 38416800 -189107778 + L2 LINE L2 3244 3301 -12 811 181 21 0 chr3 38417702 38417846 -189106732 + MER45A DNA AcHobo 1 147 -31 730 244 29 6 chr3 38418463 38418635 -189105943 + MER45A DNA AcHobo 1 176 -2 348 357 61 24 chr3 38418641 38418854 -189105724 - MIR SINE MIR -40 222 2 676 261 5 48 chr3 38419156 38419363 -189105215 - MIR SINE MIR 0 262 65 312 296 108 17 chr3 38419438 38419614 -189104964 + L1ME LINE L1 4640 4831 -1315 306 333 63 48 chr3 38419666 38419918 -189104660 + L1ME LINE L1 4918 5173 -973 326 201 132 42 chr3 38420345 38420489 -189104089 + L1ME LINE L1 5624 5780 -341 255 238 16 16 chr3 38420692 38420755 -189103823 + GA-rich Low_complexity Low_complexity 2 64 0 637 238 21 96 chr3 38422105 38422386 -189102192 + MER102a DNA MER1_type 68 327 -3 2102 126 0 3 chr3 38424751 38425044 -189099534 + AluSg SINE Alu 1 292 -18 444 286 196 8 chr3 38425823 38426078 -189098500 - L1ME LINE L1 -335 5786 5484 1517 305 86 19 chr3 38426247 38426981 -189097597 + MER20B DNA MER1_type 1 783 0 1800 121 53 7 chr3 38427971 38428252 -189096326 + AluSx SINE Alu 1 294 -18 363 305 140 74 chr3 38428939 38429333 -189095245 + L2 LINE L2 2842 3261 -11 183 313 30 121 chr3 38430973 38431139 -189093439 - MER5A DNA MER1_type -4 185 35 315 65 0 0 chr3 38431715 38431761 -189092817 - MADE1 DNA Mariner -34 46 1 785 265 44 116 chr3 38431904 38432726 -189091852 + LTR41 LTR ERVL 1 763 -10 285 336 50 17 chr3 38433430 38433549 -189091029 + L3 LINE CR1 255 377 -1200 198 293 53 13 chr3 38433611 38433686 -189090892 + L3 LINE CR1 804 881 -696 407 294 131 32 chr3 38433769 38433990 -189090588 + MIR SINE MIR 20 262 0 276 348 107 0 chr3 38434032 38434144 -189090434 + L3 LINE CR1 1028 1151 -426 536 331 163 27 chr3 38434223 38435076 -189089502 - L2 LINE L2 -443 2871 1903 449 283 113 25 chr3 38435167 38435326 -189089252 + L3 LINE CR1 1385 1557 -20 221 136 0 45 chr3 38435692 38435736 -189088842 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 525 290 91 100 chr3 38436519 38437258 -189087320 + L2 LINE L2 2590 3309 -4 2115 113 36 0 chr3 38437273 38437574 -189087004 - AluSp SINE Alu -1 312 1 216 0 0 0 chr3 38438681 38438705 -189085873 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1780 115 59 0 chr3 38438820 38439106 -189085472 + L1PA10 LINE L1 5866 6168 0 288 307 14 7 chr3 38439362 38439502 -189085076 + L1MC4a LINE L1 5590 5730 -391 241 259 0 0 chr3 38440055 38440140 -189084438 + L1M2 LINE L1 5348 5432 -868 12373 142 60 11 chr3 38440145 38442444 -189082134 - Tigger1 DNA MER2_type -1 2417 6 303 295 121 36 chr3 38442707 38442873 -189081705 + L1MC4a LINE L1 5721 5900 -1908 1098 161 21 5 chr3 38443578 38443771 -189080807 - MER1B DNA MER1_type -101 196 1 236 250 0 56 chr3 38443956 38444028 -189080550 - L2 LINE L2 -4 3309 3242 253 371 95 53 chr3 38444170 38444453 -189080125 - L2 LINE L2 -1 3271 2977 223 331 22 63 chr3 38444637 38444813 -189079765 + MIR SINE MIR 25 197 -56 2018 117 0 11 chr3 38445437 38445720 -189078858 + AluSx SINE Alu 1 280 -32 229 338 13 0 chr3 38445812 38445889 -189078689 + GA-rich Low_complexity Low_complexity 5 82 0 2220 107 0 7 chr3 38445904 38446202 -189078376 + AluSx SINE Alu 1 296 -16 274 190 0 0 chr3 38448073 38448131 -189076447 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 505 235 28 116 chr3 38449265 38449507 -189075071 + MER112 DNA MER1_type 1 216 -44 315 261 56 67 chr3 38449507 38449687 -189074891 + MER5B DNA MER1_type 1 178 0 505 235 28 116 chr3 38449687 38449729 -189074849 + MER112 DNA MER1_type 216 260 0 2140 153 49 0 chr3 38450050 38450397 -189074181 - THE1B LTR MaLR 0 364 1 231 339 9 18 chr3 38450604 38450716 -189073862 + GA-rich Low_complexity Low_complexity 1 111 0 380 338 55 46 chr3 38451788 38452025 -189072553 - MIR SINE MIR -11 251 13 916 233 40 0 chr3 38452165 38452367 -189072211 - MER58A DNA MER1_type -12 212 3 1653 122 0 13 chr3 38452499 38452728 -189071850 + AluSg/x SINE Alu 71 296 -14 619 289 16 11 chr3 38453607 38453797 -189070781 + MIR SINE MIR 14 204 -58 254 268 33 98 chr3 38453945 38454098 -189070480 - L2 LINE L2 -189 3083 2941 2274 110 10 0 chr3 38454282 38454591 -189069987 - AluSx SINE Alu 0 312 1 2485 122 8 3 chr3 38455457 38455819 -189068759 + THE1B LTR MaLR 1 364 0 1817 174 3 14 chr3 38456043 38456337 -189068241 + AluJb SINE Alu 1 291 -21 393 287 77 35 chr3 38456447 38456590 -189067988 - MLT1L LTR MaLR -221 394 246 290 206 96 0 chr3 38456674 38456747 -189067831 - MLT1L LTR MaLR -531 84 5 492 242 0 23 chr3 38456756 38456884 -189067694 + MER103 DNA DNA 42 166 0 484 254 159 48 chr3 38459119 38459308 -189065270 - MER63A DNA MER1_type 0 210 1 606 360 100 18 chr3 38460086 38460586 -189063992 + MLT1K LTR MaLR 38 578 -10 482 328 27 55 chr3 38460684 38460977 -189063601 + MLT1H LTR MaLR 38 322 -227 668 270 144 0 chr3 38461164 38461378 -189063200 - MIR SINE MIR 0 262 25 216 61 20 41 chr3 38461389 38461438 -189063140 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 26 0 0 0 chr3 38461559 38461585 -189062993 + AT_rich Low_complexity Low_complexity 1 26 0 2076 112 25 34 chr3 38461991 38462349 -189062229 - THE1A LTR MaLR 0 355 1 11120 96 30 4 chr3 38462349 38463888 -189060690 - THE1A-int LTR MaLR 0 1580 1 2195 109 26 11 chr3 38463890 38464238 -189060340 - THE1A LTR MaLR -2 353 1 211 286 0 0 chr3 38464428 38464477 -189060101 + L2 LINE L2 3219 3267 -5 411 68 0 0 chr3 38464545 38464604 -189059974 + (CA)n Simple_repeat Simple_repeat 2 60 0 249 33 0 0 chr3 38464603 38464633 -189059945 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 1425 214 30 3 chr3 38465778 38466073 -189058505 + AluJb SINE Alu 1 303 -9 327 264 43 68 chr3 38467056 38467219 -189057359 - MLT1K LTR MaLR -52 536 378 769 182 43 32 chr3 38468560 38468747 -189055831 - MER53 DNA DNA 0 189 1 23 0 0 0 chr3 38469723 38469746 -189054832 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr3 38470555 38470587 -189053991 + AT_rich Low_complexity Low_complexity 1 32 0 5639 30 0 10 chr3 38470655 38471333 -189053245 + L1PA3 LINE L1 5485 6155 0 402 216 131 57 chr3 38471351 38471527 -189053051 + L1MC5 LINE L1 7725 7913 -48 612 299 99 30 chr3 38473859 38474464 -189050114 + L1MEd LINE L1 970 1676 -4634 874 260 86 35 chr3 38474474 38474928 -189049650 + L1ME3A LINE L1 5679 6155 -15 1804 124 4 7 chr3 38475648 38475923 -189048655 + L1PA8 LINE L1 5879 6152 -20 397 264 82 89 chr3 38479749 38480029 -189044549 - L2 LINE L2 -52 3261 2984 1101 221 213 22 chr3 38480089 38480446 -189044132 + MER39 LTR ERV1 260 684 -23 1114 355 101 29 chr3 38480447 38481368 -189043210 + L2 LINE L2 1980 2966 -348 262 318 83 32 chr3 38481418 38481635 -189042943 - MLT1L LTR MaLR -10 605 378 290 273 45 64 chr3 38481912 38482022 -189042556 + L2 LINE L2 3171 3278 -35 211 277 36 24 chr3 38482633 38482716 -189041862 + MIR SINE MIR 42 125 -83 190 267 0 0 chr3 38484553 38484598 -189039980 - L2 LINE L2 -89 3224 3180 282 327 115 19 chr3 38485031 38485187 -189039391 - MIR SINE MIR -43 219 49 285 272 62 0 chr3 38485550 38485631 -189038947 + MER96 DNA MER1_type? 5 90 -85 206 304 0 14 chr3 38486513 38486582 -189037996 - MIR SINE MIR 0 262 195 27 29 0 0 chr3 38488232 38488266 -189036312 + AT_rich Low_complexity Low_complexity 1 34 0 344 280 140 20 chr3 38488535 38488685 -189035893 - MIR3 SINE MIR -6 202 35 1329 222 64 124 chr3 38491447 38492467 -189032111 + L1MC5 LINE L1 6946 7903 -58 243 200 20 0 chr3 38492532 38492582 -189031996 + GA-rich Low_complexity Low_complexity 3 53 0 189 0 0 0 chr3 38492813 38492834 -189031744 + (A)n Simple_repeat Simple_repeat 1 21 0 2095 114 0 7 chr3 38493249 38493546 -189031032 - AluSg SINE Alu -15 295 1 678 289 22 26 chr3 38494603 38494831 -189029747 + MIR SINE MIR 7 233 -29 975 274 31 42 chr3 38498842 38499199 -189025379 + MLT1H LTR MaLR 2 354 -195 553 238 40 8 chr3 38499344 38499470 -189025108 - MIR SINE MIR -122 140 11 207 0 0 0 chr3 38499527 38499550 -189025028 + (TG)n Simple_repeat Simple_repeat 2 24 0 1110 295 45 26 chr3 38501484 38501908 -189022670 + LTR16A LTR ERVL 19 450 0 2135 125 3 0 chr3 38502223 38502511 -189022067 + AluSg1 SINE Alu 1 289 -20 965 330 127 43 chr3 38502862 38503203 -189021375 + L2 LINE L2 1783 2094 -1219 610 276 0 17 chr3 38503203 38503384 -189021194 - MER5B DNA MER1_type 0 178 1 965 330 127 43 chr3 38503384 38504405 -189020173 + L2 LINE L2 2094 3264 -49 1201 242 47 22 chr3 38504789 38505153 -189019425 + L1ME3 LINE L1 5790 6162 0 193 417 18 41 chr3 38507193 38507411 -189017167 - L2 LINE L2 -84 3188 2976 1243 283 73 28 chr3 38507577 38508221 -189016357 + L2 LINE L2 2636 3313 0 1113 316 147 27 chr3 38508229 38509232 -189015346 - L2 LINE L2 -482 2832 1710 863 214 83 42 chr3 38509324 38509660 -189014918 + L1ME1 LINE L1 5807 6156 -10 229 405 30 15 chr3 38510258 38510389 -189014189 + L2 LINE L2 3139 3271 -1 21 0 0 0 chr3 38510473 38510494 -189014084 + AT_rich Low_complexity Low_complexity 1 21 0 758 240 120 14 chr3 38510774 38510982 -189013596 + MIR SINE MIR 13 242 -20 261 118 0 0 chr3 38513018 38513069 -189011509 + (CA)n Simple_repeat Simple_repeat 1 51 0 844 280 64 57 chr3 38514757 38515275 -189009303 + L2 LINE L2 2521 3165 -148 198 0 0 0 chr3 38515275 38515297 -189009281 + (TA)n Simple_repeat Simple_repeat 2 23 0 844 280 64 57 chr3 38515297 38515447 -189009131 + L2 LINE L2 3165 3312 -1 317 224 26 0 chr3 38516048 38516124 -189008454 + MIR SINE MIR 180 257 -5 1920 157 0 3 chr3 38516168 38516454 -189008124 + AluSx SINE Alu 3 287 -25 295 277 64 0 chr3 38516985 38517079 -189007499 + MIR SINE MIR 42 141 -67 336 102 0 0 chr3 38517411 38517460 -189007118 + (TA)n Simple_repeat Simple_repeat 1 49 0 594 177 126 69 chr3 38517466 38517641 -189006937 - MIR SINE MIR -20 242 58 310 328 228 16 chr3 38518157 38518407 -189006171 - L3 LINE CR1 -289 1288 986 489 295 106 32 chr3 38518423 38518640 -189005938 + MIR SINE MIR 28 260 -2 290 286 75 53 chr3 38518634 38518767 -189005811 - L3 LINE CR1 -577 1000 865 * 21 0 0 0 chr3 38519010 38519031 -189005547 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 38519613 38519634 -189004944 + AT_rich Low_complexity Low_complexity 1 21 0 224 246 31 15 chr3 38519945 38520010 -189004568 - L2 LINE L2 -188 3084 3019 1305 316 92 27 chr3 38520020 38520901 -189003677 - L2 LINE L2 0 3313 2374 342 0 0 0 chr3 38521033 38521071 -189003507 + (TG)n Simple_repeat Simple_repeat 2 39 0 200 283 172 29 chr3 38521114 38521358 -189003220 - L2 LINE L2 -446 2868 2590 909 250 22 71 chr3 38523200 38523468 -189001110 - MIR SINE MIR 0 262 8 242 330 21 0 chr3 38524675 38524772 -188999806 - MIR SINE MIR 0 262 164 465 287 112 53 chr3 38524921 38525315 -188999263 - MLT1H LTR MaLR -125 424 8 286 296 112 0 chr3 38525731 38525829 -188998749 + MLT2E LTR ERVL 120 228 -400 736 265 31 14 chr3 38525884 38526107 -188998471 + MLT2E LTR ERVL 362 588 -40 646 299 27 5 chr3 38526117 38526304 -188998274 - MIR SINE MIR -61 201 11 353 222 0 0 chr3 38526365 38526437 -188998141 + MER63 DNA MER1_type 672 743 -319 768 313 25 28 chr3 38526599 38526919 -188997659 + LTR16C LTR ERVL 53 371 -120 447 262 73 68 chr3 38526991 38527197 -188997381 - MIR SINE MIR -3 259 53 3077 221 46 10 chr3 38528158 38529664 -188994914 - L1MB2 LINE L1 -88 6083 4526 28 29 0 0 chr3 38530467 38530502 -188994076 + AT_rich Low_complexity Low_complexity 1 35 0 1151 114 29 48 chr3 38530539 38530638 -188993940 - MER2 DNA MER2_type -139 206 107 2532 108 11 3 chr3 38530638 38530999 -188993579 + THE1B LTR MaLR 1 364 0 1151 114 29 48 chr3 38530999 38531109 -188993469 - MER2 DNA MER2_type -238 107 1 242 239 68 17 chr3 38531112 38531229 -188993349 + L1MB8 LINE L1 6056 6178 0 252 216 144 45 chr3 38532907 38533018 -188991560 - MIR SINE MIR -21 241 120 49 18 0 0 chr3 38533808 38533864 -188990714 + AT_rich Low_complexity Low_complexity 1 56 0 742 205 0 0 chr3 38533864 38533991 -188990587 - AluJb SINE Alu -185 127 1 348 219 56 124 chr3 38535032 38535210 -188989368 - MIR SINE MIR -45 217 52 2318 138 60 29 chr3 38535326 38535739 -188988839 + MSTC LTR MaLR 1 426 -2 235 182 164 36 chr3 38535780 38535890 -188988688 + L1MC5 LINE L1 7407 7530 -431 1180 208 14 1 chr3 38535978 38536290 -188988288 + MER2 DNA MER2_type 1 345 0 286 225 58 75 chr3 38536298 38536418 -188988160 + L1ME3 LINE L1 5965 6082 -80 1248 121 261 75 chr3 38537113 38537420 -188987158 - THE1B LTR MaLR 0 364 1 401 273 94 47 chr3 38538350 38538478 -188986100 - L2 LINE L2 -5 3267 3134 340 250 172 0 chr3 38538944 38539060 -188985518 - MIR SINE MIR -25 237 102 270 0 0 0 chr3 38539117 38539147 -188985431 + (TTCC)n Simple_repeat Simple_repeat 4 33 0 24 0 0 0 chr3 38539729 38539753 -188984825 + AT_rich Low_complexity Low_complexity 1 24 0 2240 95 7 7 chr3 38540935 38541240 -188983338 - AluSx SINE Alu -7 305 1 1627 133 101 3 chr3 38541347 38541663 -188982915 - L1MA6 LINE L1 -2 6298 5952 288 263 11 53 chr3 38542405 38542500 -188982078 - MIR SINE MIR -12 250 160 198 0 0 0 chr3 38543332 38543354 -188981224 + (TG)n Simple_repeat Simple_repeat 1 22 0 5962 138 60 41 chr3 38544095 38544613 -188979965 - Tigger3b DNA MER2_type -1797 1231 725 2257 76 7 10 chr3 38544613 38544902 -188979676 + AluY SINE Alu 1 288 -23 5962 138 60 41 chr3 38544902 38545590 -188978988 - Tigger3b DNA MER2_type -2303 725 1 456 340 98 9 chr3 38546157 38546372 -188978206 - MIR SINE MIR -27 235 2 2229 113 0 0 chr3 38546575 38546867 -188977711 + AluSc SINE Alu 1 292 -17 495 0 0 0 chr3 38547887 38547942 -188976636 + (TG)n Simple_repeat Simple_repeat 1 55 0 250 254 32 0 chr3 38547958 38548021 -188976557 - MLT1L LTR MaLR -550 65 1 575 95 0 21 chr3 38548708 38548803 -188975775 - L1PA7 LINE L1 0 6154 6062 242 313 203 2 chr3 38549066 38549259 -188975319 - MIR SINE MIR -25 237 5 196 241 69 0 chr3 38549442 38549500 -188975078 - L2 LINE L2 -3 3310 3249 454 331 128 3 chr3 38549676 38549972 -188974606 - MLT1I LTR MaLR -7 402 70 649 225 75 40 chr3 38550128 38550328 -188974250 + MIR SINE MIR 47 253 -9 259 299 127 64 chr3 38550338 38550804 -188973774 - L2 LINE L2 -275 3038 2547 363 283 18 9 chr3 38551494 38551607 -188972971 + MER5C DNA MER1_type 4 117 -207 919 196 50 0 chr3 38551607 38551806 -188972772 - MER20 DNA MER1_type -10 209 1 375 177 257 17 chr3 38551807 38551982 -188972596 + MER5C DNA MER1_type 108 324 0 453 259 125 28 chr3 38552329 38552545 -188972033 + MER102a DNA MER1_type 2 238 -92 329 328 165 53 chr3 38553125 38554393 -188970185 - L2 LINE L2 -15 3257 1781 3801 122 51 8 chr3 38554393 38555002 -188969576 - MER41B LTR ERV1 0 635 1 329 328 165 53 chr3 38555002 38555195 -188969383 - L2 LINE L2 -1491 1781 1611 230 309 27 40 chr3 38555322 38555471 -188969107 + MER5A DNA MER1_type 7 153 -36 946 256 14 5 chr3 38555510 38555729 -188968849 + MIR SINE MIR 31 251 -11 283 331 22 36 chr3 38555763 38555902 -188968676 - MER5A DNA MER1_type -1 188 52 2462 71 0 0 chr3 38556126 38556420 -188968158 - AluY SINE Alu -17 294 1 579 288 79 22 chr3 38557166 38557395 -188967183 + MER102a DNA MER1_type 3 244 -86 498 268 55 0 chr3 38557399 38557526 -188967052 + MIR SINE MIR 104 237 -25 235 235 62 62 chr3 38557526 38557607 -188966971 + MER102a DNA MER1_type 250 330 0 1178 293 65 18 chr3 38558090 38558582 -188965996 + LTR33 LTR ERVL 5 519 -2 747 224 36 49 chr3 38559038 38559261 -188965317 + MER33 DNA MER1_type 8 227 -97 337 316 65 0 chr3 38559995 38560134 -188964444 + MIR SINE MIR 105 252 -10 2119 189 64 35 chr3 38560388 38560870 -188963708 - MLT1D LTR MaLR 0 505 10 231 209 0 0 chr3 38561060 38561103 -188963475 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 293 280 152 56 chr3 38561104 38561229 -188963349 - L2 LINE L2 0 3272 3136 434 186 9 200 chr3 38561434 38561575 -188963003 - MER5B DNA MER1_type 0 178 12 2511 62 13 0 chr3 38561575 38561881 -188962697 - AluY SINE Alu -1 310 1 434 186 9 200 chr3 38561881 38561918 -188962660 - MER5B DNA MER1_type -166 12 46 1724 176 7 13 chr3 38561918 38562224 -188962354 - AluJb SINE Alu -8 304 1 434 186 9 200 chr3 38562224 38562264 -188962314 - MER5B DNA MER1_type -131 47 1 421 236 76 37 chr3 38562581 38562770 -188961808 + MIR SINE MIR 49 241 -21 276 263 8 4 chr3 38562897 38563002 -188961576 + MLT1H LTR MaLR 24 169 -380 2067 165 52 10 chr3 38563004 38563411 -188961167 + L1MA3 LINE L1 5869 6292 -13 598 271 99 73 chr3 38563431 38563856 -188960722 + MLT1H1 LTR MaLR 114 549 -6 331 248 136 30 chr3 38563953 38564151 -188960427 - MLT1F LTR MaLR -323 219 1 533 142 61 101 chr3 38564748 38564896 -188959682 - L1MC2 LINE L1 -9 6335 6194 999 163 0 6 chr3 38564900 38565060 -188959518 + AluJo SINE Alu 23 181 -131 1017 158 0 0 chr3 38565068 38565220 -188959358 + AluJo SINE Alu 157 308 -4 751 236 55 10 chr3 38565225 38565424 -188959154 - L1MC2 LINE L1 -125 6219 6012 239 138 92 62 chr3 38565428 38565493 -188959085 + HsTC2 DNA Tc2 25 91 -1807 202 200 0 43 chr3 38565510 38565580 -188958998 + CT-rich Low_complexity Low_complexity 3 69 0 489 278 116 68 chr3 38565812 38565854 -188958724 + MLT1L LTR MaLR 42 81 -534 886 286 116 37 chr3 38565854 38566337 -188958241 + LTR33 LTR ERVL 1 521 0 489 278 116 68 chr3 38566337 38566647 -188957931 + MLT1L LTR MaLR 81 411 -204 327 238 49 0 chr3 38567263 38567360 -188957218 - MIR SINE MIR -61 201 100 1687 170 69 7 chr3 38567767 38568102 -188956476 + MER47B DNA MER2_type 1 418 0 1861 187 124 134 chr3 38568458 38569408 -188955170 + LTR1B LTR ERV1 1 1020 0 576 342 42 0 chr3 38569612 38569852 -188954726 - MIR SINE MIR -12 250 1 43 20 0 0 chr3 38570017 38570067 -188954511 + AT_rich Low_complexity Low_complexity 1 50 0 1179 243 89 40 chr3 38570332 38570736 -188953842 - MLT1H LTR MaLR 0 549 126 24 32 0 0 chr3 38570853 38570884 -188953694 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr3 38570898 38570921 -188953657 + AT_rich Low_complexity Low_complexity 1 23 0 2469 44 40 0 chr3 38571720 38572017 -188952561 + AluY SINE Alu 1 309 -2 226 293 303 7 chr3 38572518 38572805 -188951773 + L3 LINE CR1 432 803 -774 596 259 28 75 chr3 38572830 38573021 -188951557 + L1MC5 LINE L1 7522 7690 -271 1575 185 14 14 chr3 38573021 38573307 -188951271 + AluJo SINE Alu 3 288 -24 596 259 28 75 chr3 38573307 38573474 -188951104 + L1MC5 LINE L1 7690 7863 -98 367 197 0 0 chr3 38573530 38573591 -188950987 + MLT1A1 LTR MaLR 117 177 -188 283 291 191 9 chr3 38574497 38574607 -188949971 - MIR3 SINE MIR -41 167 38 724 307 92 28 chr3 38574728 38575119 -188949459 + LTR33A LTR ERVL 99 514 -9 27 49 0 0 chr3 38575552 38575593 -188948985 + AT_rich Low_complexity Low_complexity 1 41 0 252 244 53 26 chr3 38575599 38575733 -188948845 + L1MDa LINE L1 2492 2637 -3903 240 315 27 13 chr3 38575745 38575894 -188948684 + L1M4 LINE L1 4418 4568 -1578 2073 134 0 0 chr3 38576240 38576547 -188948031 - AluSx SINE Alu 0 307 1 1589 115 133 44 chr3 38576884 38577154 -188947424 + AluSg SINE Alu 1 294 -16 561 344 113 26 chr3 38577229 38577723 -188946855 + HAL1b LINE L1 72 608 -740 7229 68 16 6 chr3 38577943 38579045 -188945533 + L1PA8 LINE L1 5059 6170 -2 2689 129 2 15 chr3 38580256 38580650 -188943928 - MLT1B LTR MaLR -1 389 1 350 281 96 22 chr3 38580867 38581179 -188943399 - L1MC4a LINE L1 -401 5720 5593 2419 102 0 3 chr3 38581195 38581508 -188943070 - AluSx SINE Alu 0 312 1 257 250 38 38 chr3 38581508 38581588 -188942990 - L1MC4a LINE L1 -553 5617 5538 204 361 115 0 chr3 38581597 38581719 -188942859 - MIR SINE MIR -113 149 14 921 185 12 0 chr3 38583032 38583205 -188941373 - FRAM SINE Alu -5 171 1 247 326 152 0 chr3 38583249 38583381 -188941197 - MIR SINE MIR -108 154 3 293 311 61 34 chr3 38583466 38583614 -188940964 + MER117 DNA MER1_type 46 197 0 186 43 0 0 chr3 38583860 38583883 -188940695 + (TTG)n Simple_repeat Simple_repeat 2 24 0 6127 156 18 17 chr3 38583883 38585795 -188938783 - L1PB1 LINE L1 -10 6857 4951 18029 139 45 2 chr3 38585905 38589358 -188935220 - L1PB1 LINE L1 -3265 3597 1 1539 203 0 23 chr3 38589571 38589876 -188934702 - AluJo SINE Alu -8 304 7 1734 169 54 0 chr3 38589898 38590194 -188934384 - AluSx SINE Alu 0 312 1 906 173 0 13 chr3 38590609 38590759 -188933819 + FRAM SINE Alu 6 153 -23 261 0 0 0 chr3 38591039 38591068 -188933510 + (A)n Simple_repeat Simple_repeat 1 29 0 639 267 27 59 chr3 38591095 38591316 -188933262 + LTR16A1 LTR ERVL 197 410 -47 826 182 44 11 chr3 38591807 38591988 -188932590 + LTR41 LTR ERVL 1 187 -586 370 324 46 12 chr3 38592860 38593031 -188931547 - MIR SINE MIR -45 217 38 206 280 196 60 chr3 38593699 38594031 -188930547 + L2 LINE L2 2882 3258 -14 685 303 53 0 chr3 38594288 38594532 -188930046 - MIR SINE MIR 0 262 6 4424 133 38 6 chr3 38594640 38595354 -188929224 + L1PB4 LINE L1 5418 6154 -2 669 340 77 46 chr3 38596201 38596589 -188927989 + L3 LINE CR1 412 811 -766 474 325 34 19 chr3 38596873 38597079 -188927499 - MIR SINE MIR 0 262 54 195 299 106 82 chr3 38597169 38597376 -188927202 + L3 LINE CR1 1077 1288 -289 379 243 89 42 chr3 38597389 38597555 -188927023 - MLT1G1 LTR MaLR 0 555 370 1202 215 73 63 chr3 38597555 38597951 -188926627 - MER39 LTR ERV1 -1 706 307 240 237 0 34 chr3 38597934 38597993 -188926585 - MER34 LTR ERV1 -419 123 67 * 647 263 26 78 chr3 38598092 38598362 -188926216 - MLT1G1 LTR MaLR -339 256 1 198 289 74 30 chr3 38598363 38598498 -188926080 + L3 LINE CR1 1246 1386 -191 22 56 0 0 chr3 38598698 38598734 -188925844 + AT_rich Low_complexity Low_complexity 1 36 0 306 281 12 12 chr3 38600193 38600275 -188924303 - MIR3 SINE MIR -9 199 118 2051 140 7 0 chr3 38600606 38600899 -188923679 + AluSx SINE Alu 3 297 -15 505 242 146 42 chr3 38601237 38601402 -188923176 + MER5A DNA MER1_type 8 189 0 483 285 97 5 chr3 38601666 38601852 -188922726 - MIR SINE MIR -1 261 59 422 294 53 12 chr3 38601885 38602055 -188922523 + MER5A DNA MER1_type 7 183 -6 501 274 8 0 chr3 38602142 38602266 -188922312 - MER94 DNA DNA 0 134 10 27 0 0 0 chr3 38603211 38603238 -188921340 + AT_rich Low_complexity Low_complexity 1 27 0 1271 246 172 22 chr3 38603243 38603653 -188920925 + MLT2B1 LTR ERVL 1 485 -35 222 62 0 0 chr3 38603653 38603685 -188920893 + (CA)n Simple_repeat Simple_repeat 1 32 0 1271 246 172 22 chr3 38603685 38603722 -188920856 + MLT2B1 LTR ERVL 485 515 -5 294 308 19 39 chr3 38603926 38604030 -188920548 + LTR67 LTR ERVL 99 200 -357 260 232 58 0 chr3 38604305 38604374 -188920204 + LTR67 LTR ERVL 485 557 0 2685 112 13 16 chr3 38604557 38604933 -188919645 - THE1C LTR MaLR 0 375 1 2129 143 47 52 chr3 38605273 38605638 -188918940 - THE1B LTR MaLR 0 364 2 10953 86 60 3 chr3 38605639 38607126 -188917452 - THE1B-int LTR MaLR -6 1574 3 2320 125 48 20 chr3 38607130 38607483 -188917095 - THE1B LTR MaLR -1 363 1 575 195 231 12 chr3 38607608 38607655 -188916923 + MIR SINE MIR 2 37 -225 2628 161 29 0 chr3 38607655 38608071 -188916507 - MSTA LTR MaLR 0 428 1 575 195 231 12 chr3 38608071 38608192 -188916386 + MIR SINE MIR 37 207 -55 641 257 71 0 chr3 38608205 38608388 -188916190 - MER3 DNA MER1_type 0 209 14 636 188 6 12 chr3 38608564 38608729 -188915849 + CT-rich Low_complexity Low_complexity 1 164 0 195 281 115 52 chr3 38609592 38609688 -188914890 + MIR SINE MIR 6 107 -155 311 297 87 48 chr3 38609792 38610021 -188914557 + MLT1H LTR MaLR 116 353 -196 380 289 26 0 chr3 38611617 38611731 -188912847 + HAL1 LINE L1 776 892 -1615 512 227 67 93 chr3 38611792 38611986 -188912592 - MLT1J LTR MaLR -223 288 100 285 146 0 0 chr3 38612062 38612110 -188912468 + (CA)n Simple_repeat Simple_repeat 1 48 0 1782 261 139 23 chr3 38612118 38613286 -188911292 + HAL1 LINE L1 911 2213 -294 378 226 56 87 chr3 38613312 38613507 -188911071 + HAL1 LINE L1 2319 2507 0 2386 102 0 0 chr3 38613607 38613911 -188910667 + AluSg SINE Alu 1 304 -6 1799 163 11 3 chr3 38614165 38614448 -188910130 + AluSx SINE Alu 1 285 -27 324 125 47 16 chr3 38614741 38614805 -188909773 + L1ME2 LINE L1 5824 5889 -275 240 204 0 20 chr3 38615077 38615126 -188909452 - MIR SINE MIR -69 139 92 860 293 84 3 chr3 38616274 38616585 -188907993 - L2 LINE L2 -719 2595 2260 476 309 25 74 chr3 38616595 38616837 -188907741 - MIR SINE MIR -26 236 10 889 284 122 36 chr3 38616903 38617371 -188907207 - MLT1J LTR MaLR -2 509 2 1913 269 110 29 chr3 38617944 38618948 -188905630 + L2 LINE L2 2228 3309 -4 585 81 270 0 chr3 38618957 38619068 -188905510 - MSTA LTR MaLR -49 379 239 293 176 250 28 chr3 38619474 38619582 -188904996 + MIR SINE MIR 110 241 -21 772 232 28 43 chr3 38620122 38620333 -188904245 - MER58A DNA MER1_type 0 224 17 3095 148 27 36 chr3 38620404 38620963 -188903615 + MLT2B3 LTR ERVL 1 554 0 464 210 210 25 chr3 38621075 38621232 -188903346 - MER5A DNA MER1_type 0 189 4 231 311 112 12 chr3 38621269 38621510 -188903068 - L1MC/D LINE L1 -573 5593 5329 614 288 102 32 chr3 38621516 38622116 -188902462 - L1MC/D LINE L1 -837 5309 4668 638 231 46 50 chr3 38622122 38622404 -188902174 - L1ME3A LINE L1 0 6170 5890 * 663 234 69 65 chr3 38622400 38622690 -188901888 - L1ME3A LINE L1 -554 5608 5318 1740 148 46 23 chr3 38622764 38623069 -188901509 - AluSx SINE Alu 0 312 1 190 293 24 122 chr3 38673272 38673395 -188851183 + L2 LINE L2 2954 3064 -208 575 303 33 33 chr3 38674180 38674424 -188850154 + MIR SINE MIR 19 262 0 389 329 241 30 chr3 38674431 38674533 -188850045 + L2 LINE L2 1829 1908 -1406 1714 125 82 11 chr3 38674533 38674813 -188849765 + AluSx SINE Alu 1 300 -12 389 329 241 30 chr3 38674813 38675421 -188849157 + L2 LINE L2 1908 2689 -625 1449 67 10 0 chr3 38676032 38676225 -188848353 + L1PA5 LINE L1 5958 6152 -2 1612 134 0 0 chr3 38677303 38677527 -188847051 - AluSg/x SINE Alu -16 294 71 1027 233 67 31 chr3 38677527 38677947 -188846631 + LTR7 LTR ERV1 1 435 -15 1103 247 24 16 chr3 38678425 38678798 -188845780 + Charlie8 DNA MER1_type 310 685 -1732 421 294 32 8 chr3 38678873 38678999 -188845579 - MIR SINE MIR -64 144 16 267 152 0 0 chr3 38680058 38680104 -188844474 + CT-rich Low_complexity Low_complexity 1 46 0 431 330 75 9 chr3 38680386 38680598 -188843980 - MIR SINE MIR -35 227 2 775 296 16 12 chr3 38680707 38680960 -188843618 - MIR SINE MIR 0 262 9 22 80 0 0 chr3 38681182 38681232 -188843346 + AT_rich Low_complexity Low_complexity 1 50 0 360 0 0 0 chr3 38682169 38682238 -188842340 + (TAGA)n Simple_repeat Simple_repeat 1 109 0 360 0 0 0 chr3 38682238 38682278 -188842300 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 2349 100 44 14 chr3 38682278 38682638 -188841940 - THE1C LTR MaLR -2 373 3 8924 126 55 42 chr3 38682640 38684200 -188840378 - THE1C-int LTR MaLR 0 1580 1 2070 131 74 8 chr3 38684200 38684552 -188840026 - THE1C LTR MaLR 0 375 1 249 174 105 58 chr3 38684596 38684682 -188839896 + L1MC4 LINE L1 6614 6703 -1339 4974 137 12 16 chr3 38684905 38685800 -188838778 + L1PA16 LINE L1 5273 6164 -2 22 35 0 0 chr3 38685950 38685979 -188838599 + AT_rich Low_complexity Low_complexity 1 29 0 259 289 277 0 chr3 38686363 38686446 -188838132 - MER5A DNA MER1_type -6 183 78 305 370 19 72 chr3 38686976 38687238 -188837340 + L2 LINE L2 3025 3272 0 944 62 78 0 chr3 38687394 38687523 -188837055 + MER85 DNA T2_type 1 139 0 1296 231 69 34 chr3 38689087 38689524 -188835054 + LTR16A1 LTR ERVL 1 452 -5 256 255 142 9 chr3 38690183 38690289 -188834289 - MIR SINE MIR -4 258 139 464 302 71 25 chr3 38690290 38690555 -188834023 - MLT1J LTR MaLR -63 535 212 500 202 25 8 chr3 38690692 38690811 -188833767 - MER94 DNA DNA -12 122 2 195 42 0 0 chr3 38691636 38691660 -188832918 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1350 231 84 3 chr3 38692281 38692627 -188831951 - MLT1A2 LTR MaLR 0 374 1 23 0 0 0 chr3 38693491 38693514 -188831064 + AT_rich Low_complexity Low_complexity 1 23 0 1746 169 38 20 chr3 38693718 38694062 -188830516 - MLT2D LTR ERVL -64 350 1 231 345 0 40 chr3 38694066 38694214 -188830364 + MER112 DNA MER1_type 119 260 0 716 275 192 28 chr3 38694669 38695163 -188829415 - MLT1G1 LTR MaLR -6 589 15 306 0 0 0 chr3 38695163 38695197 -188829381 + (A)n Simple_repeat Simple_repeat 1 34 0 473 267 41 7 chr3 38695334 38695480 -188829098 - MIR3 SINE MIR -52 156 6 1714 189 0 31 chr3 38695825 38696147 -188828431 - AluJb SINE Alu 0 312 1 526 319 59 0 chr3 38696714 38696883 -188827695 - MIR3 SINE MIR -3 205 27 726 282 67 56 chr3 38697114 38697546 -188827032 + MLT1K LTR MaLR 152 588 0 229 336 50 25 chr3 38697609 38697728 -188826850 - MIR3 SINE MIR -72 136 15 250 315 43 11 chr3 38698130 38698222 -188826356 + MIR3 SINE MIR 5 99 -109 254 169 65 13 chr3 38698321 38698398 -188826180 + (TAGA)n Simple_repeat Simple_repeat 2 82 0 340 310 141 35 chr3 38698553 38698808 -188825770 + L2 LINE L2 2807 3088 -184 392 303 91 0 chr3 38699213 38699345 -188825233 + MIR SINE MIR 4 147 -115 405 309 19 6 chr3 38699345 38699507 -188825071 + MLT1J1 LTR MaLR 17 180 -266 1348 256 65 43 chr3 38699507 38699952 -188824626 - LTR16C LTR ERVL 0 491 37 457 279 85 40 chr3 38700026 38700227 -188824351 + MLT1J2 LTR MaLR 241 450 0 288 344 153 6 chr3 38700817 38700980 -188823598 - MIR SINE MIR -7 255 69 441 310 79 39 chr3 38701594 38701823 -188822755 - MIR SINE MIR -8 254 17 249 303 195 15 chr3 38702150 38702345 -188822233 + MIR SINE MIR 30 259 -3 2327 161 42 32 chr3 38703052 38703535 -188821043 + MLT2B2 LTR ERVL 2 534 -20 192 97 0 0 chr3 38703537 38703568 -188821010 + (TCCC)n Simple_repeat Simple_repeat 3 33 0 219 154 0 26 chr3 38703575 38703614 -188820964 + (TG)n Simple_repeat Simple_repeat 2 39 0 429 20 0 0 chr3 38703831 38703881 -188820697 + (TA)n Simple_repeat Simple_repeat 1 50 0 180 0 0 0 chr3 38703884 38703904 -188820674 + (GA)n Simple_repeat Simple_repeat 2 21 0 778 249 86 81 chr3 38704046 38704606 -188819972 + MLT1G LTR MaLR 10 588 -2 227 381 26 26 chr3 38704735 38704924 -188819654 - L2 LINE L2 -174 3098 2910 432 0 0 0 chr3 38705775 38705823 -188818755 + (CA)n Simple_repeat Simple_repeat 2 49 0 1074 223 48 65 chr3 38705900 38706272 -188818306 - MLT1A2 LTR MaLR -8 366 1 269 197 14 0 chr3 38706978 38707049 -188817529 + GA-rich Low_complexity Low_complexity 3 74 0 412 264 19 0 chr3 38707725 38707831 -188816747 - MIR SINE MIR -2 260 153 1972 209 26 38 chr3 38707831 38708334 -188816244 + MLT1D LTR MaLR 7 503 -2 357 263 11 32 chr3 38708335 38708430 -188816148 - MIR SINE MIR -108 154 62 458 300 115 10 chr3 38708550 38708750 -188815828 - MIR SINE MIR -1 261 41 317 242 28 99 chr3 38709291 38709473 -188815105 - MLT1H LTR MaLR -204 345 177 210 211 211 0 chr3 38710639 38710691 -188813887 + MIR SINE MIR 90 152 -56 240 266 38 13 chr3 38711088 38711167 -188813411 - MLT1J1 LTR MaLR -294 152 72 2020 128 0 16 chr3 38711411 38711716 -188812862 - AluSx SINE Alu -12 300 1 319 290 19 9 chr3 38711926 38712033 -188812545 + L1ME4a LINE L1 5554 5661 -460 637 151 0 0 chr3 38712044 38712137 -188812441 - FRAM SINE Alu -25 151 59 995 263 75 36 chr3 38712300 38712833 -188811745 + L1MC4 LINE L1 7488 8041 -1 366 278 139 32 chr3 38712883 38713099 -188811479 + L1ME4a LINE L1 5879 6117 -4 215 318 19 37 chr3 38714464 38714571 -188810007 + L2 LINE L2 1359 1463 -1851 1169 266 88 146 chr3 38714693 38714874 -188809704 + L2 LINE L2 1707 1897 -1416 2516 70 0 0 chr3 38714874 38715174 -188809404 - AluY SINE Alu -11 300 1 1169 266 88 146 chr3 38715174 38715762 -188808816 + L2 LINE L2 1897 2517 -796 468 35 0 0 chr3 38715762 38715820 -188808758 + (CA)n Simple_repeat Simple_repeat 1 58 0 1169 266 88 146 chr3 38715820 38716559 -188808019 + L2 LINE L2 2517 3085 -228 2095 109 10 7 chr3 38716559 38716863 -188807715 - AluSp SINE Alu -8 305 1 1169 266 88 146 chr3 38716863 38717080 -188807498 + L2 LINE L2 3085 3313 0 2454 71 0 13 chr3 38717165 38717476 -188807102 + AluY SINE Alu 5 311 0 212 267 44 78 chr3 38718180 38718270 -188806308 + MIR SINE MIR 75 161 -101 670 282 63 15 chr3 38718387 38718784 -188805794 + L1MCa LINE L1 1219 1634 -4792 331 317 138 0 chr3 38718992 38719137 -188805441 - MER5B DNA MER1_type -3 175 11 522 260 39 0 chr3 38719296 38719423 -188805155 - MER5B DNA MER1_type -5 173 42 1532 202 0 39 chr3 38719443 38719750 -188804828 - AluJo SINE Alu -17 295 1 259 358 115 12 chr3 38720552 38720717 -188803861 + MER5A DNA MER1_type 8 189 0 * 731 272 51 13 chr3 38720717 38720941 -188803637 + MIR SINE MIR 16 243 -19 5353 184 28 14 chr3 38721329 38722654 -188801924 - L1MC2 LINE L1 -40 6304 4943 189 0 0 0 chr3 38722654 38722675 -188801903 + (TC)n Simple_repeat Simple_repeat 2 22 0 5353 184 28 14 chr3 38722675 38723156 -188801422 - L1MC2 LINE L1 -1401 4943 4470 189 211 0 0 chr3 38723313 38723365 -188801213 + (TATATG)n Simple_repeat Simple_repeat 6 57 0 261 293 61 24 chr3 38723586 38723798 -188800780 - L1ME LINE L1 -340 5781 5562 442 303 94 37 chr3 38723848 38724092 -188800486 - L1ME LINE L1 -2271 5514 5257 386 315 92 59 chr3 38724219 38724609 -188799969 + L3 LINE CR1 1086 1488 -89 508 316 25 5 chr3 38726084 38726280 -188798298 + LTR16B LTR ERVL 223 422 -42 3783 152 23 54 chr3 38726861 38727698 -188796880 + L1PB4 LINE L1 5344 6154 -2 316 293 128 15 chr3 38728301 38728434 -188796144 - MIR3 SINE MIR -41 167 20 1527 281 122 15 chr3 38728900 38729498 -188795080 + MLT2F LTR ERVL 2 663 0 260 269 76 56 chr3 38729707 38729904 -188794674 + MLT1H LTR MaLR 342 542 -7 481 333 129 0 chr3 38730041 38730266 -188794312 + MIR SINE MIR 5 258 -4 705 249 52 43 chr3 38730903 38731136 -188793442 - MIR SINE MIR 0 262 28 201 74 0 0 chr3 38731679 38731706 -188792872 + (CAG)n Simple_repeat Simple_repeat 2 28 0 459 302 137 26 chr3 38732182 38732543 -188792035 + L2 LINE L2 2614 3016 -256 333 293 35 0 chr3 38732543 38732659 -188791919 + LTR33 LTR ERVL 1 120 -401 1857 138 74 19 chr3 38732998 38733323 -188791255 + MER61A LTR ERV1 1 343 0 2427 180 28 18 chr3 38733323 38733867 -188790711 + MER61A-int LTR ERV1 1 549 -4668 271 128 0 21 chr3 38733915 38733962 -188790616 + MER61A-int LTR ERV1 732 777 -4440 10139 79 27 19 chr3 38733998 38735607 -188788971 + MER61A-int LTR ERV1 1411 3031 -2186 17214 90 19 13 chr3 38735707 38738652 -188785926 + MER61A-int LTR ERV1 2211 5217 0 1572 169 63 30 chr3 38738652 38738984 -188785594 + MER61A LTR ERV1 1 343 0 202 310 0 0 chr3 38738994 38739052 -188785526 + L2 LINE L2 3256 3313 0 201 358 84 0 chr3 38739412 38739507 -188785071 + MIR SINE MIR 100 202 -60 402 292 151 16 chr3 38739905 38740090 -188784488 + MIR SINE MIR 53 262 0 1573 217 37 45 chr3 38740694 38740999 -188783579 - MLT1D LTR MaLR 0 505 204 780 204 0 0 chr3 38740999 38741131 -188783447 - FLAM_A SINE Alu -1 132 1 1573 217 37 45 chr3 38741131 38741314 -188783264 - MLT1D LTR MaLR -301 204 21 289 133 0 0 chr3 38742318 38742363 -188782215 - MADE1 DNA Mariner 0 80 36 937 301 60 0 chr3 38742364 38742699 -188781879 - LTR16C LTR ERVL -57 434 80 2810 134 4 13 chr3 38743078 38743532 -188781046 + L1PA16 LINE L1 5716 6165 -1 203 234 43 0 chr3 38743726 38743773 -188780805 + L2 LINE L2 3242 3290 -23 2333 114 34 0 chr3 38743835 38744187 -188780391 + THE1B LTR MaLR 1 364 0 186 43 0 0 chr3 38744633 38744656 -188779922 + (A)n Simple_repeat Simple_repeat 1 23 0 299 338 65 13 chr3 38744922 38745076 -188779502 + L2 LINE L2 2245 2406 -908 1939 258 108 24 chr3 38745656 38746393 -188778185 - L1MD2 LINE L1 -227 6066 5268 23 0 0 0 chr3 38746421 38746444 -188778134 + AT_rich Low_complexity Low_complexity 1 23 0 2068 48 0 0 chr3 38746656 38746904 -188777674 - L1PA7 LINE L1 -2 6152 5905 2628 120 12 8 chr3 38746917 38747317 -188777261 - LTR3 LTR ERVK -9 423 22 4983 57 7 3 chr3 38747335 38748048 -188776530 - L1PA7 LINE L1 -242 5912 5198 1250 88 0 0 chr3 38748045 38748226 -188776352 - L1P3 LINE L1 -5176 1285 1105 * 226 139 0 0 chr3 38748246 38748282 -188776296 + U2 snRNA snRNA 1 36 -152 292 188 50 0 chr3 38748282 38748362 -188776216 + L1ME4a LINE L1 5319 5402 -957 * 5424 253 60 27 chr3 38748359 38748383 -188776195 - L1MD2 LINE L1 -1634 4446 4424 2122 159 11 124 chr3 38748383 38748931 -188775647 + MER66B LTR ERV1 1 486 0 5424 253 60 27 chr3 38748931 38751302 -188773276 - L1MD2 LINE L1 -1656 4424 1935 2145 73 33 4 chr3 38751302 38751601 -188772977 - AluY SINE Alu 0 307 1 5424 253 60 27 chr3 38751601 38752230 -188772348 - L1MD2 LINE L1 -4145 1935 1328 974 255 82 55 chr3 38752243 38753006 -188771572 - L1MD2 LINE L1 -4864 1216 469 3077 152 40 78 chr3 38753123 38753841 -188770737 + LTR8 LTR ERV1 1 691 0 358 235 10 0 chr3 38754907 38755034 -188769544 + L1ME4a LINE L1 5695 5826 -295 226 241 19 0 chr3 38755085 38755193 -188769385 + (TA)n Simple_repeat Simple_repeat 1 110 0 1443 219 16 42 chr3 38755729 38756014 -188768564 + L1ME1 LINE L1 5740 6012 -154 1612 156 65 54 chr3 38756014 38756385 -188768193 - THE1C LTR MaLR 0 375 1 1443 219 16 42 chr3 38756385 38756533 -188768045 + L1ME1 LINE L1 6012 6162 -4 867 216 6 0 chr3 38756690 38756861 -188767717 + FRAM SINE Alu 1 166 -10 542 244 39 0 chr3 38756861 38756988 -188767590 - MER5B DNA MER1_type -45 133 2 189 304 108 78 chr3 38757465 38757669 -188766909 - MIR SINE MIR -50 212 3 207 203 43 43 chr3 38757715 38757784 -188766794 - MIR SINE MIR 0 262 194 536 232 18 0 chr3 38757828 38757940 -188766638 - MIR SINE MIR -71 191 78 767 180 16 0 chr3 38758847 38758969 -188765609 - FLAM_C SINE Alu -19 124 1 361 167 52 52 chr3 38760402 38760498 -188764080 + MER53 DNA DNA 23 118 -71 4171 147 36 1 chr3 38760521 38761268 -188763310 - L1PA16 LINE L1 0 6166 5394 * 6972 222 36 11 chr3 38761267 38763552 -188761026 - L1PA15-16 LINE L1 -2640 4209 1852 2584 93 6 0 chr3 38763603 38763956 -188760622 + THE1A LTR MaLR 1 355 0 471 248 116 0 chr3 38763967 38764096 -188760482 + MLT1A1 LTR MaLR 199 342 -23 243 91 0 0 chr3 38764094 38764127 -188760451 + U2 snRNA snRNA 1 33 -155 * 357 242 48 0 chr3 38765219 38765343 -188759235 + LTR16A1 LTR ERVL 320 449 -8 1044 221 91 100 chr3 38765972 38766433 -188758145 - LTR16A1 LTR ERVL 0 457 1 333 161 0 0 chr3 38767929 38767985 -188756593 + U2 snRNA snRNA 4 59 -129 371 332 30 64 chr3 38767985 38768250 -188756328 - MIR SINE MIR -1 261 6 254 397 45 10 chr3 38768445 38768737 -188755841 + L2 LINE L2 2456 2757 -557 1362 265 54 15 chr3 38769001 38769465 -188755113 - LTR16C LTR ERVL -6 485 4 370 266 62 9 chr3 38769472 38769585 -188754993 + MER94 DNA DNA 9 127 -7 240 355 40 24 chr3 38769790 38769914 -188754664 + MIR SINE MIR 21 146 -62 241 246 36 103 chr3 38770774 38770969 -188753609 - HAL1 LINE L1 -1 2506 2325 983 282 52 70 chr3 38770970 38771453 -188753125 + MLT1J LTR MaLR 1 474 -37 789 289 109 33 chr3 38771483 38772113 -188752465 - HAL1 LINE L1 -188 2319 1642 357 312 45 13 chr3 38773665 38773819 -188750759 + MIR SINE MIR 53 211 -51 272 346 19 57 chr3 38774029 38774188 -188750390 - MER5A DNA MER1_type -2 187 35 230 320 20 67 chr3 38774057 38774207 -188750371 + MER5A DNA MER1_type 43 185 -4 * 219 296 0 0 chr3 38775311 38775365 -188749213 + (CA)n Simple_repeat Simple_repeat 2 55 0 193 273 169 0 chr3 38775550 38775627 -188748951 + MIR SINE MIR 112 201 -61 1934 213 67 17 chr3 38775681 38776162 -188748416 + MLT1D LTR MaLR 1 374 0 625 348 49 22 chr3 38777460 38777908 -188746670 + MLT1K LTR MaLR 10 469 -119 259 353 63 43 chr3 38777980 38778187 -188746391 - L2 LINE L2 -388 2926 2716 1509 225 45 25 chr3 38778254 38778698 -188745880 + Charlie4a DNA MER1_type 36 488 -20 637 229 51 40 chr3 38779990 38780017 -188744561 - MER45A DNA AcHobo -1404 177 152 1889 133 29 52 chr3 38780017 38780175 -188744403 + THE1C LTR MaLR 1 161 -214 2441 69 10 0 chr3 38780175 38780481 -188744097 - AluY SINE Alu -2 309 1 1889 133 29 52 chr3 38780481 38780706 -188743872 + THE1C LTR MaLR 161 375 0 637 229 51 40 chr3 38780706 38780853 -188743725 - MER45A DNA AcHobo -1429 152 1 362 279 53 89 chr3 38781188 38781696 -188742882 - HAL1 LINE L1 -905 1602 1113 2941 224 59 9 chr3 38782094 38782888 -188741690 + MER97a DNA MER1_type? 57 890 -4 696 286 56 31 chr3 38783754 38784169 -188740409 + MLT1G LTR MaLR 10 416 -126 2009 149 10 0 chr3 38784625 38784933 -188739645 - AluSx SINE Alu -1 311 1 404 277 45 25 chr3 38785272 38785619 -188738959 + MER110A LTR ERV1 95 470 0 188 135 27 0 chr3 38785778 38785815 -188738763 + GA-rich Low_complexity Low_complexity 3 40 0 685 278 16 26 chr3 38785817 38786011 -188738567 - MIR SINE MIR -64 198 7 946 198 21 11 chr3 38788371 38788558 -188736020 - MER5A DNA MER1_type 0 189 1 243 193 18 18 chr3 38788684 38788741 -188735837 + GA-rich Low_complexity Low_complexity 4 60 0 210 286 71 14 chr3 38789543 38789613 -188734965 + L2 LINE L2 3161 3234 -38 616 230 0 0 chr3 38790065 38790178 -188734400 + MER81 DNA DNA 1 113 -1 308 292 6 60 chr3 38791356 38791512 -188733066 - MIR SINE MIR -63 145 36 302 252 204 10 chr3 38791705 38791808 -188732770 - L2 LINE L2 0 3272 3150 949 202 83 0 chr3 38791813 38792006 -188732572 - MER58A DNA MER1_type -3 221 13 192 77 0 0 chr3 38792069 38792095 -188732483 + (TTG)n Simple_repeat Simple_repeat 2 27 0 372 180 144 14 chr3 38792121 38792260 -188732318 - L1ME4a LINE L1 -4 6117 5961 222 37 0 0 chr3 38792368 38792395 -188732183 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 5028 96 64 73 chr3 38792415 38793318 -188731260 - THE1B-int LTR MaLR -685 895 1 2347 138 3 22 chr3 38793318 38793689 -188730889 - THE1B LTR MaLR 0 364 1 442 331 11 0 chr3 38793741 38793916 -188730662 - LTR16A LTR ERVL -89 361 185 260 307 44 0 chr3 38794340 38794454 -188730124 + (TGAG)n Simple_repeat Simple_repeat 3 121 0 236 228 0 0 chr3 38794634 38794691 -188729887 + Charlie8 DNA MER1_type 2360 2416 -1 826 294 58 7 chr3 38794720 38794995 -188729583 - LTR16C LTR ERVL -14 477 189 201 194 30 104 chr3 38796270 38796337 -188728241 - MIR SINE MIR -111 151 90 643 277 53 77 chr3 38796773 38797152 -188727426 - MLT1J LTR MaLR -52 459 90 2039 136 27 3 chr3 38797352 38797690 -188726888 - L1PB4 LINE L1 0 6156 5811 284 277 39 15 chr3 38798761 38798891 -188725687 - L1ME4a LINE L1 -310 5811 5679 289 307 111 29 chr3 38799199 38799515 -188725063 + L1MC/D LINE L1 5317 5658 -2150 249 208 0 0 chr3 38799525 38799597 -188724981 + (CA)n Simple_repeat Simple_repeat 1 72 0 450 0 0 0 chr3 38799624 38799674 -188724904 + (A)n Simple_repeat Simple_repeat 1 50 0 21 36 0 0 chr3 38799695 38799723 -188724855 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 38799779 38799802 -188724776 + AT_rich Low_complexity Low_complexity 1 23 0 40 37 0 0 chr3 38799824 38799878 -188724700 + AT_rich Low_complexity Low_complexity 1 54 0 535 259 5 22 chr3 38799878 38800063 -188724515 - L1PB2 LINE L1 -19 6132 5951 185 229 0 66 chr3 38801630 38801691 -188722887 + L2 LINE L2 3257 3313 0 1518 237 121 11 chr3 38801731 38802276 -188722302 + L1ME3 LINE L1 5488 6092 -70 244 179 45 0 chr3 38802303 38802370 -188722208 + (CATA)n Simple_repeat Simple_repeat 3 72 0 243 293 61 12 chr3 38802548 38802630 -188721948 - MIR SINE MIR -62 146 61 264 30 0 0 chr3 38802663 38802696 -188721882 + (CA)n Simple_repeat Simple_repeat 2 34 0 2383 95 0 3 chr3 38803279 38803585 -188720993 - AluSg1 SINE Alu 0 309 5 523 299 7 14 chr3 38804468 38804615 -188719963 + MIR SINE MIR 12 157 -105 41 58 0 0 chr3 38804620 38804689 -188719889 + AT_rich Low_complexity Low_complexity 1 69 0 1449 67 10 0 chr3 38805574 38805767 -188718811 - L1PA5 LINE L1 -2 6152 5958 918 302 16 4 chr3 38806239 38806484 -188718094 - MIR SINE MIR 0 262 15 285 318 140 9 chr3 38807070 38807177 -188717401 - L2 LINE L2 0 3313 3193 1104 186 13 22 chr3 38807181 38807407 -188717171 - MER58A DNA MER1_type 0 224 1 466 267 107 9 chr3 38807466 38807691 -188716887 - HAL1b LINE L1 -798 550 304 22 0 0 0 chr3 38808008 38808030 -188716548 + AT_rich Low_complexity Low_complexity 1 22 0 1663 217 14 22 chr3 38808136 38808504 -188716074 + MLT1A1 LTR MaLR 1 365 0 186 103 0 0 chr3 38808813 38808842 -188715736 + (TG)n Simple_repeat Simple_repeat 2 30 0 579 312 43 19 chr3 38810046 38810467 -188714111 - L1ME3A LINE L1 -239 5931 5500 209 281 0 31 chr3 38810634 38810698 -188713880 - L2 LINE L2 -3 3310 3249 403 304 0 20 chr3 38810837 38810985 -188713593 + MIR SINE MIR 118 262 0 302 277 45 9 chr3 38811391 38811499 -188713079 - MLT1L LTR MaLR -27 588 477 693 310 29 14 chr3 38811499 38811951 -188712627 + LTR16C LTR ERVL 3 491 0 326 227 48 51 chr3 38812018 38812244 -188712334 - MLT1L LTR MaLR -332 283 11 1003 167 105 4 chr3 38814079 38814327 -188710251 + MER33 DNA MER1_type 1 266 -58 21 0 0 0 chr3 38814969 38814990 -188709588 + AT_rich Low_complexity Low_complexity 1 21 0 435 270 104 65 chr3 38815288 38815683 -188708895 + L2 LINE L2 2266 2734 -580 1660 265 62 16 chr3 38815734 38816582 -188707996 + L1ME3A LINE L1 5083 5973 -197 774 146 18 111 chr3 38816589 38816760 -188707818 + AluJo SINE Alu 101 255 -57 1219 202 36 39 chr3 38817336 38817673 -188706905 - L1MB7 LINE L1 -20 6164 5829 1458 187 67 12 chr3 38819190 38819557 -188705021 - L1MB2 LINE L1 -7 6164 5815 4854 151 23 4 chr3 38819565 38821146 -188703432 - L1PA16 LINE L1 -9 6157 4549 1879 110 11 0 chr3 38821344 38821607 -188702971 + AluSq SINE Alu 1 266 -47 35 0 0 0 chr3 38823699 38823734 -188700844 + AT_rich Low_complexity Low_complexity 1 35 0 296 336 64 0 chr3 38823914 38824039 -188700539 - MIR SINE MIR -77 185 53 287 355 152 5 chr3 38824573 38824784 -188699794 + MIR SINE MIR 8 249 -13 849 297 76 54 chr3 38825023 38825525 -188699053 - MLT1K LTR MaLR -65 523 11 764 275 32 53 chr3 38825564 38825811 -188698767 - MIR SINE MIR -1 261 20 1245 206 54 42 chr3 38825851 38826186 -188698392 + MLT1D LTR MaLR 22 360 -145 253 105 0 53 chr3 38826217 38826274 -188698304 + (TCTCC)n Simple_repeat Simple_repeat 1 54 0 1446 254 123 40 chr3 38826323 38826899 -188697679 + MLT1E3 LTR MaLR 1 624 0 659 190 0 25 chr3 38826978 38827126 -188697452 + FLAM_A SINE Alu 5 133 0 552 225 50 8 chr3 38827498 38827618 -188696960 + MIR SINE MIR 72 196 -66 558 240 77 52 chr3 38827903 38828136 -188696442 - MIR SINE MIR -12 250 12 180 0 0 0 chr3 38828525 38828545 -188696033 + (T)n Simple_repeat Simple_repeat 1 20 0 296 257 181 0 chr3 38829301 38829406 -188695172 + MER5C DNA MER1_type 2 125 -199 229 236 28 14 chr3 38829536 38829608 -188694970 + GA-rich Low_complexity Low_complexity 3 75 0 635 263 91 51 chr3 38829688 38830060 -188694518 + L2 LINE L2 2887 3273 -40 383 38 19 0 chr3 38830073 38830126 -188694452 + (TGAA)n Simple_repeat Simple_repeat 4 57 0 189 302 82 63 chr3 38830554 38830713 -188693865 + MIR SINE MIR 15 176 -86 301 164 18 0 chr3 38831390 38831445 -188693133 + L2 LINE L2 3257 3312 -1 4993 140 49 10 chr3 38832415 38833955 -188690623 - L1PB2 LINE L1 -2 6149 4549 444 212 62 26 chr3 38834204 38834317 -188690261 + MER63 DNA MER1_type 1 743 -93 562 310 58 25 chr3 38835007 38835281 -188689297 - MER115 DNA AcHobo -263 430 148 317 329 77 12 chr3 38835386 38835556 -188689022 - L2 LINE L2 -161 3111 2931 840 196 0 80 chr3 38836130 38836329 -188688249 - MER58A DNA MER1_type -2 222 40 2106 122 7 0 chr3 38836746 38837040 -188687538 + AluSg SINE Alu 3 298 -12 503 332 22 32 chr3 38837069 38837346 -188687232 - MLT1I LTR MaLR -64 345 72 421 346 58 5 chr3 38837399 38837587 -188686991 + MIR SINE MIR 63 260 -2 192 419 12 12 chr3 38837576 38837662 -188686916 + MIR SINE MIR 55 140 -68 * 1019 306 72 15 chr3 38837979 38838436 -188686142 + MLT2E LTR ERVL 1 483 -145 484 109 20 79 chr3 38838436 38838480 -188686098 + MLT1B LTR MaLR 1 46 -344 2167 76 0 0 chr3 38838480 38838756 -188685822 - AluY SINE Alu -17 294 19 484 109 20 79 chr3 38838756 38838812 -188685766 + MLT1B LTR MaLR 46 95 -295 659 187 7 43 chr3 38838826 38838965 -188685613 - AluJo SINE Alu -178 134 1 1448 139 25 65 chr3 38838968 38839291 -188685287 + MLT1B LTR MaLR 81 390 0 5748 85 22 3 chr3 38839397 38840257 -188684321 + L1PA12 LINE L1 5291 6166 -2 310 164 82 0 chr3 38840265 38840326 -188684252 + MLT2E LTR ERVL 563 628 0 632 268 113 22 chr3 38840326 38840557 -188684021 + MIR SINE MIR 10 261 -1 1909 251 8 32 chr3 38840827 38840960 -188683618 + MLT1F LTR MaLR 1 136 -406 2165 112 0 16 chr3 38840960 38841272 -188683306 + AluSx SINE Alu 1 307 -5 1909 251 8 32 chr3 38841272 38841633 -188682945 + MLT1F LTR MaLR 136 483 -59 490 257 45 92 chr3 38841719 38841998 -188682580 - MIR SINE MIR 0 262 3 2140 128 76 17 chr3 38842703 38843047 -188681531 - THE1B LTR MaLR 0 364 1 367 244 170 9 chr3 38843406 38843655 -188680923 - L1MC/D LINE L1 -561 5560 5478 221 175 53 0 chr3 38844305 38844362 -188680216 + (TA)n Simple_repeat Simple_repeat 1 60 0 790 237 114 31 chr3 38844390 38844707 -188679871 - MER2 DNA MER2_type -1 343 1 321 301 50 60 chr3 38844709 38845046 -188679532 - L1ME3A LINE L1 -243 5927 5592 1655 249 75 78 chr3 38845062 38846330 -188678248 - L1MC5 LINE L1 -58 7903 6640 990 231 9 9 chr3 38846656 38846877 -188677701 - MER58A DNA MER1_type 0 224 4 387 261 76 17 chr3 38848146 38848265 -188676313 + MIR SINE MIR 60 185 -77 814 246 63 85 chr3 38848297 38848851 -188675727 + MER34 LTR ERV1 1 542 0 182 257 0 0 chr3 38849095 38849130 -188675448 + L2 LINE L2 3263 3297 -16 538 258 145 6 chr3 38849228 38849387 -188675191 + MER5A DNA MER1_type 9 189 0 289 240 120 38 chr3 38850144 38850410 -188674168 - MER34 LTR ERV1 0 734 353 337 253 143 58 chr3 38850771 38850925 -188673653 - L1ME4a LINE L1 -87 6034 5868 300 319 8 17 chr3 38850977 38851096 -188673482 - L1MC4 LINE L1 -5 8037 7920 1438 189 130 13 chr3 38851578 38851954 -188672624 - MER39 LTR ERV1 0 707 288 1522 107 51 5 chr3 38851996 38852212 -188672366 - AluSg/x SINE Alu 0 312 87 10170 123 30 4 chr3 38852215 38853858 -188670720 - Tigger1 DNA MER2_type -733 1685 1 2106 130 0 3 chr3 38853881 38854193 -188670385 - AluSx SINE Alu 0 311 1 195 275 0 0 chr3 38855214 38855254 -188669324 + L2 LINE L2 3215 3254 -18 305 232 63 11 chr3 38855428 38855523 -188669055 - MER103 DNA DNA -45 121 22 21 36 0 0 chr3 38856376 38856404 -188668174 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr3 38856430 38856467 -188668111 + AT_rich Low_complexity Low_complexity 1 37 0 1485 216 86 16 chr3 38857214 38857381 -188667197 + LTR37B LTR ERV1 9 163 -305 2548 187 38 27 chr3 38857381 38857933 -188666645 + MER89 LTR ERV1 1 558 -1 1485 216 86 16 chr3 38857933 38858195 -188666383 + LTR37B LTR ERV1 163 468 0 1646 157 128 33 chr3 38859466 38859919 -188664659 + LTR54B LTR ERV1 1 496 -2 309 324 10 0 chr3 38860085 38860187 -188664391 - L1ME4a LINE L1 -289 5881 5779 573 211 122 102 chr3 38860471 38860775 -188663803 - MLT1H LTR MaLR -125 424 115 552 233 54 3 chr3 38860778 38860978 -188663600 - MLT1G1 LTR MaLR 0 595 298 447 296 60 9 chr3 38861004 38861216 -188663362 - MLT1G1 LTR MaLR -332 223 1 251 255 20 20 chr3 38861225 38861323 -188663255 - MLT1H LTR MaLR -444 105 8 1458 155 21 55 chr3 38862628 38862919 -188661659 - AluJo SINE Alu -15 297 17 279 317 35 13 chr3 38863364 38863591 -188660987 + L1ME3A LINE L1 2903 3134 -3012 585 269 115 15 chr3 38863965 38864709 -188659869 + L1ME3A LINE L1 5118 5925 -245 472 82 59 24 chr3 38865038 38865123 -188659455 + MER4A LTR ERV1 1 88 -576 1595 116 50 28 chr3 38865132 38865470 -188659108 + MER4A LTR ERV1 261 664 0 5642 120 12 9 chr3 38865935 38866826 -188657752 + MER4D LTR ERV1 1 894 -9 2300 225 103 21 chr3 38866920 38867547 -188657031 - L1ME2 LINE L1 -25 6139 5422 1394 211 11 7 chr3 38867547 38867847 -188656731 - AluJb SINE Alu 0 301 1 2300 225 103 21 chr3 38867847 38868080 -188656498 - L1ME2 LINE L1 -742 5422 5209 * 5658 158 26 30 chr3 38868055 38870160 -188654418 - L1 LINE L1 -2664 4901 2811 2119 140 36 36 chr3 38870160 38870524 -188654054 - THE1B LTR MaLR 0 364 1 10802 112 2 8 chr3 38870524 38871615 -188652963 - THE1B-int LTR MaLR 0 1580 499 7556 33 0 0 chr3 38871615 38872831 -188651747 - L1PA4 LINE L1 0 6155 4938 10802 112 2 8 chr3 38872831 38873328 -188651250 - THE1B-int LTR MaLR -1081 499 1 2223 124 33 33 chr3 38873328 38873690 -188650888 - THE1B LTR MaLR 0 364 3 12897 171 76 24 chr3 38873692 38876254 -188648324 - L1 LINE L1 -4750 2815 106 2257 101 3 10 chr3 38876254 38876561 -188648017 + AluSc SINE Alu 1 305 -4 12897 171 76 24 chr3 38876561 38876673 -188647905 - L1 LINE L1 -7459 106 1 730 315 88 49 chr3 38876714 38877649 -188646929 + L1MC/D LINE L1 4605 5585 -748 306 0 0 0 chr3 38877941 38877975 -188646603 + (CA)n Simple_repeat Simple_repeat 2 35 0 213 351 108 9 chr3 38878236 38878347 -188646231 - L3 LINE CR1 -1025 552 431 525 284 91 50 chr3 38879182 38879597 -188644981 - MLT1K LTR MaLR 0 588 139 1113 223 31 71 chr3 38879842 38880223 -188644355 + MLT1A2 LTR MaLR 1 366 -8 211 345 164 34 chr3 38880403 38880902 -188643676 + L2 LINE L2 1932 2495 -819 282 289 148 23 chr3 38880936 38881064 -188643514 + L2 LINE L2 2630 2773 -541 558 286 44 28 chr3 38881223 38881405 -188643173 - MIR SINE MIR -65 197 13 246 256 51 13 chr3 38881481 38881559 -188643019 + Charlie4 DNA MER1_type 1863 1943 -18 415 332 31 26 chr3 38882929 38883158 -188641420 + MLT1L LTR MaLR 364 593 -22 207 301 109 58 chr3 38883302 38883578 -188641000 + L2 LINE L2 2656 2945 -369 273 336 24 0 chr3 38885288 38885413 -188639165 - MIR SINE MIR -17 245 118 241 419 27 7 chr3 38885693 38885841 -188638737 - L2 LINE L2 -454 2860 2710 243 173 0 0 chr3 38886491 38886543 -188638035 + (CA)n Simple_repeat Simple_repeat 2 53 0 185 352 21 28 chr3 38887358 38887500 -188637078 + L2 LINE L2 2341 2481 -833 406 307 79 36 chr3 38887548 38887877 -188636701 + L2 LINE L2 2599 2941 -373 185 300 56 33 chr3 38888030 38888120 -188636458 + L2 LINE L2 3181 3272 0 360 125 0 0 chr3 38890627 38890691 -188633887 + (GA)n Simple_repeat Simple_repeat 1 64 0 212 247 188 35 chr3 38891757 38891842 -188632736 + L2 LINE L2 3155 3252 -20 865 198 11 28 chr3 38892112 38892294 -188632284 + AluJb SINE Alu 134 312 0 1614 162 0 52 chr3 38892744 38893034 -188631544 + AluJo SINE Alu 3 277 -35 180 0 0 0 chr3 38893047 38893067 -188631511 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 2111 119 3 7 chr3 38894333 38894628 -188629950 + AluSq SINE Alu 1 294 -19 21 0 0 0 chr3 38895022 38895043 -188629535 + AT_rich Low_complexity Low_complexity 1 21 0 333 288 62 46 chr3 38895554 38896102 -188628476 + L1MC/D LINE L1 2903 3459 -2687 414 224 118 12 chr3 38896325 38896495 -188628083 + L1MC/D LINE L1 5066 5253 -893 334 198 151 17 chr3 38896496 38896668 -188627910 + L1MC/D LINE L1 5255 5449 -793 424 317 117 44 chr3 38946853 38947263 -188577315 + L2 LINE L2 2828 3267 -5 358 189 132 9 chr3 38947263 38947369 -188577209 + MER103 DNA DNA 37 155 -11 1993 246 87 27 chr3 38947871 38947901 -188576677 - MLT1G1 LTR MaLR 0 595 568 1838 155 129 26 chr3 38947901 38948289 -188576289 + MSTA LTR MaLR 1 428 0 9843 117 11 56 chr3 38948291 38949943 -188574635 + MSTA-int LTR MaLR 3 1580 0 2146 135 128 13 chr3 38949943 38950327 -188574251 + MSTA LTR MaLR 1 428 0 1993 246 87 27 chr3 38950327 38950853 -188573725 - MLT1G1 LTR MaLR -26 569 1 1802 123 0 0 chr3 38951111 38951354 -188573224 + AluSc SINE Alu 62 304 -5 698 332 87 7 chr3 38951807 38952223 -188572355 + LTR16A LTR ERVL 2 450 0 942 283 75 40 chr3 38953590 38953990 -188570588 + LTR16C LTR ERVL 73 486 -5 726 323 70 29 chr3 38954470 38954882 -188569696 - LTR16B LTR ERVL -31 433 5 1499 244 9 9 chr3 38954952 38955268 -188569310 + MLT1I LTR MaLR 94 409 0 395 253 20 10 chr3 38957097 38957196 -188567382 - MIR SINE MIR -61 147 48 395 287 7 44 chr3 38957677 38957813 -188566765 - L2 LINE L2 -4 3268 3138 1319 252 117 68 chr3 38959496 38959547 -188565031 + MLT1G1 LTR MaLR 5 52 -543 2316 108 108 38 chr3 38959547 38959947 -188564631 - MSTA LTR MaLR 0 428 1 9817 157 30 2 chr3 38959947 38961554 -188563024 - MSTA-int LTR MaLR 0 1651 1 2314 98 103 54 chr3 38961556 38961778 -188562800 - MSTA LTR MaLR -2 426 216 2225 92 0 7 chr3 38961778 38962084 -188562494 - AluSg SINE Alu 0 304 1 2314 98 103 54 chr3 38962084 38962266 -188562312 - MSTA LTR MaLR -212 216 1 1319 252 117 68 chr3 38962266 38962773 -188561805 + MLT1G1 LTR MaLR 52 595 0 183 305 183 0 chr3 38962773 38962904 -188561674 - L2 LINE L2 -472 2842 2688 1152 282 76 6 chr3 38962912 38963242 -188561336 - MLT1H1 LTR MaLR -199 356 4 396 279 12 31 chr3 38963309 38963470 -188561108 + L2 LINE L2 3156 3313 0 206 196 78 0 chr3 38963473 38963524 -188561054 + L2 LINE L2 3180 3234 -79 215 308 26 13 chr3 38964374 38964452 -188560126 + MIR SINE MIR 29 107 -155 19802 153 33 43 chr3 38964461 38970207 -188554371 + L1MA2 LINE L1 13 5834 -1731 1251 77 0 0 chr3 38970207 38970363 -188554215 + AluY SINE Alu 150 305 -6 19802 153 33 43 chr3 38970363 38971284 -188553294 + L1MA2 LINE L1 5834 6763 -802 4192 121 34 0 chr3 38971384 38972055 -188552523 + L1MA2 LINE L1 7030 7723 0 279 269 51 0 chr3 38972083 38972158 -188552420 + MIR SINE MIR 106 184 -78 510 331 88 22 chr3 38972158 38972339 -188552239 + MER91A DNA MER1_type 1 193 -3 31 44 0 0 chr3 38972364 38972409 -188552169 + AT_rich Low_complexity Low_complexity 1 45 0 228 353 12 0 chr3 38972411 38972496 -188552082 + MIR SINE MIR 175 260 -2 367 245 0 16 chr3 38972852 38972974 -188551604 + L1MC/D LINE L1 5653 5768 -353 1301 226 109 24 chr3 38973170 38973591 -188550987 - LTR16A1 LTR ERVL 0 457 1 2244 100 0 0 chr3 38973853 38974143 -188550435 + AluSg SINE Alu 1 290 -20 351 286 59 84 chr3 38976897 38977943 -188546635 + L1P LINE L1 2933 3937 -2209 508 243 19 0 chr3 38977943 38978050 -188546528 + MER81 DNA DNA 5 113 -1 351 286 59 84 chr3 38978050 38978364 -188546214 + L1P LINE L1 3937 4258 -1888 853 274 87 0 chr3 38979515 38979814 -188544764 - MLT1I LTR MaLR 0 409 85 365 275 25 25 chr3 38980862 38980982 -188543596 - MLT1L LTR MaLR -84 531 412 364 238 59 30 chr3 38981234 38981335 -188543243 + MIR3 SINE MIR 97 200 -8 503 283 54 0 chr3 38981364 38981512 -188543066 + MIR SINE MIR 96 250 -12 237 108 0 0 chr3 38981642 38981679 -188542899 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 335 181 30 45 chr3 38982259 38982458 -188542120 + AluJo SINE Alu 1 292 -9 1460 200 48 97 chr3 38982817 38983333 -188541245 + MER110 LTR ERV1 1 491 0 500 278 17 52 chr3 38984335 38984508 -188540070 + MIR SINE MIR 23 189 -73 342 215 38 0 chr3 38984564 38984643 -188539935 - MLT1I LTR MaLR -22 387 306 468 238 43 67 chr3 38984679 38984889 -188539689 - MLT1I LTR MaLR -202 207 3 1245 255 46 95 chr3 38985055 38985800 -188538778 + MER21B LTR ERV1 6 713 -150 206 307 20 30 chr3 38985818 38985919 -188538659 - L2 LINE L2 -54 3259 3160 294 222 22 11 chr3 38986053 38986143 -188538435 + Charlie8 DNA MER1_type 85 175 -2242 262 347 51 0 chr3 38986295 38986393 -188538185 - MIR SINE MIR -76 132 30 205 171 0 0 chr3 38986610 38986645 -188537933 + (TTCA)n Simple_repeat Simple_repeat 1 35 0 668 298 46 27 chr3 38986658 38986987 -188537591 + L1MEc LINE L1 47 381 -6015 714 212 132 0 chr3 38987266 38987455 -188537123 + MER20 DNA MER1_type 1 214 -5 486 279 11 11 chr3 38987506 38987689 -188536889 + L1MEc LINE L1 683 865 -5531 421 312 213 20 chr3 38987766 38987863 -188536715 - L2 LINE L2 -35 3278 3201 198 118 0 0 chr3 38987863 38987897 -188536681 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 421 312 213 20 chr3 38987897 38988100 -188536478 - L2 LINE L2 -112 3201 2920 5040 156 26 27 chr3 38988119 38989937 -188534641 + L1MA3 LINE L1 4486 6304 -1 286 258 68 89 chr3 38989954 38989976 -188534602 - L2 LINE L2 -420 2894 2873 2246 147 5 33 chr3 38989976 38990343 -188534235 - LTR18A LTR ERVL 0 357 1 286 258 68 89 chr3 38990343 38990469 -188534109 - L2 LINE L2 -441 2873 2748 562 192 87 52 chr3 38990469 38990641 -188533937 - MER5B DNA MER1_type 0 178 1 286 258 68 89 chr3 38990641 38990681 -188533897 - L2 LINE L2 -566 2748 2709 2175 120 0 7 chr3 38991383 38991683 -188532895 + AluSx SINE Alu 1 298 -14 597 238 38 44 chr3 38991732 38991892 -188532686 + MER5A DNA MER1_type 30 188 -1 408 188 23 0 chr3 38992867 38992995 -188531583 + (TA)n Simple_repeat Simple_repeat 2 132 0 619 145 6 23 chr3 38993125 38993297 -188531281 + (TA)n Simple_repeat Simple_repeat 2 170 0 296 232 37 0 chr3 38993322 38993404 -188531174 + MER20 DNA MER1_type 131 215 -4 591 278 32 32 chr3 38994003 38994219 -188530359 - L2 LINE L2 0 3313 3098 451 237 8 25 chr3 38994283 38994401 -188530177 - L2 LINE L2 -534 2780 2665 656 305 39 13 chr3 38994405 38994638 -188529940 - L2 LINE L2 -452 2862 2624 207 277 123 0 chr3 38996750 38996815 -188527763 + MIR SINE MIR 75 147 -115 209 219 0 0 chr3 38997242 38997283 -188527295 + L2 LINE L2 3268 3308 -5 233 241 48 12 chr3 38998325 38998408 -188526170 + MIR SINE MIR 70 155 -107 1809 233 107 34 chr3 38998641 38999268 -188525310 + MER76 LTR ERV 1 673 -15 2585 52 3 0 chr3 38999356 38999664 -188524914 - AluY SINE Alu 0 311 3 295 232 11 32 chr3 39000517 39000612 -188523966 - L1ME4a LINE L1 -65 6056 5964 699 284 106 23 chr3 39000664 39001057 -188523521 - LTR33 LTR ERVL -8 513 88 704 199 7 0 chr3 39001057 39001193 -188523385 - MER58B DNA MER1_type 0 341 205 263 299 10 31 chr3 39001251 39001348 -188523230 - LTR33 LTR ERVL -424 97 3 201 195 0 0 chr3 39001478 39001519 -188523059 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 219 69 0 0 chr3 39001521 39001550 -188523028 + (CA)n Simple_repeat Simple_repeat 2 30 0 299 271 106 46 chr3 39001772 39001990 -188522588 + L1MC/D LINE L1 5631 5861 -1947 312 258 0 22 chr3 39002007 39002096 -188522482 + (TATG)n Simple_repeat Simple_repeat 2 88 0 629 308 72 14 chr3 39002360 39002708 -188521870 + MERVL LTR ERVL 2629 2996 -2489 1618 304 53 11 chr3 39002741 39003356 -188521222 + MERVL LTR ERVL 3087 3686 -1799 3825 199 60 36 chr3 39003551 39004483 -188520095 + L1M4 LINE L1 4 957 -5585 2677 137 28 19 chr3 39004590 39005014 -188519564 - MSTC LTR MaLR 0 428 1 614 213 25 0 chr3 39006937 39007059 -188517519 + L2 LINE L2 3189 3313 0 * 772 272 86 9 chr3 39007056 39007288 -188517290 + MIR SINE MIR 13 262 0 240 167 106 15 chr3 39007824 39007890 -188516688 + MLT1J LTR MaLR 110 181 -330 262 171 53 26 chr3 39008070 39008146 -188516432 + MLT1L LTR MaLR 532 609 -6 1670 194 10 10 chr3 39008506 39008800 -188515778 + AluJo SINE Alu 1 294 -18 315 254 94 7 chr3 39008818 39008956 -188515622 + LTR16A1 LTR ERVL 246 395 -62 270 200 17 0 chr3 39009091 39009151 -188515427 + LTR16A1 LTR ERVL 397 457 0 519 15 0 0 chr3 39009887 39009953 -188514625 - L1PA13 LINE L1 -4 6159 6094 23 33 0 0 chr3 39010280 39010310 -188514268 + AT_rich Low_complexity Low_complexity 1 30 0 694 289 32 8 chr3 39010338 39010591 -188513987 + MIR SINE MIR 2 260 -2 995 190 28 36 chr3 39011500 39011540 -188513038 - L1M4 LINE L1 -1426 4720 4681 2711 232 13 13 chr3 39011540 39012165 -188512413 - MLT1E2 LTR MaLR -1 625 1 995 190 28 36 chr3 39012165 39012371 -188512207 - L1M4 LINE L1 -1465 4681 4476 779 206 6 0 chr3 39012445 39012605 -188511973 - AluSp SINE Alu 0 313 153 21 0 0 0 chr3 39012617 39012638 -188511940 + AT_rich Low_complexity Low_complexity 1 21 0 202 343 14 0 chr3 39012668 39012738 -188511840 + L2 LINE L2 3202 3272 0 950 149 56 0 chr3 39012925 39013086 -188511492 - AluSp SINE Alu -24 289 120 384 236 0 0 chr3 39013122 39013194 -188511384 + L2 LINE L2 3201 3272 0 2200 125 0 19 chr3 39013765 39014076 -188510502 - AluSx SINE Alu -7 305 1 237 310 14 0 chr3 39014314 39014385 -188510193 + L2 LINE L2 3187 3258 -55 270 0 0 0 chr3 39014562 39014592 -188509986 + (TG)n Simple_repeat Simple_repeat 2 31 0 1533 163 29 11 chr3 39014592 39014864 -188509714 - AluJb SINE Alu -30 278 1 255 319 41 18 chr3 39015206 39015375 -188509203 + L1ME4a LINE L1 5533 5705 -416 5352 184 30 66 chr3 39018336 39019844 -188504734 + Charlie1a DNA MER1_type 1 1454 -1 1620 141 89 26 chr3 39021061 39021409 -188503169 + THE1C LTR MaLR 1 370 -5 1152 238 99 23 chr3 39021419 39022123 -188502455 - L1MCc LINE L1 -3614 3327 2592 263 144 75 14 chr3 39022167 39022313 -188502265 + (TA)n Simple_repeat Simple_repeat 1 155 0 469 259 77 80 chr3 39022511 39023235 -188501343 - L1MCc LINE L1 -4801 2140 1167 316 301 139 42 chr3 39023428 39023737 -188500841 + L1ME4a LINE L1 5726 6064 -57 294 323 48 21 chr3 39023812 39023998 -188500580 + L3b LINE CR1 1219 1409 -174 431 331 53 24 chr3 39024148 39024317 -188500261 + L3b LINE CR1 1405 1578 -5 790 304 104 80 chr3 39025673 39026933 -188497645 + L2 LINE L2 1965 3251 -21 252 0 0 0 chr3 39026942 39026970 -188497608 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 228 327 256 14 chr3 39027105 39027328 -188497250 - L3 LINE CR1 -653 924 648 309 301 60 7 chr3 39027629 39027865 -188496713 + MLT1L LTR MaLR 318 615 0 421 323 30 24 chr3 39027881 39028045 -188496533 - L3 LINE CR1 -1007 570 406 812 266 60 22 chr3 39028386 39028840 -188495738 - MLT1J LTR MaLR -1 510 3 912 169 38 27 chr3 39029012 39029196 -188495382 + MER5A DNA MER1_type 2 187 -2 677 189 150 7 chr3 39029803 39029956 -188494622 - MER5A DNA MER1_type -4 185 11 418 180 100 159 chr3 39031123 39031225 -188493353 - MER106A DNA MER1_type 0 236 130 1388 121 60 21 chr3 39031225 39031287 -188493291 - L1MA7 LINE L1 -1 6290 6232 189 0 0 0 chr3 39031287 39031308 -188493270 + (CA)n Simple_repeat Simple_repeat 2 22 0 1388 121 60 21 chr3 39031308 39031526 -188493052 - L1MA7 LINE L1 -59 6232 5999 418 180 100 159 chr3 39031526 39031662 -188492916 - MER106A DNA MER1_type -106 130 12 6353 72 95 0 chr3 39031709 39032777 -188491801 - L1PA8 LINE L1 -2 6170 5058 694 317 24 43 chr3 39032777 39033146 -188491432 - MLT1I LTR MaLR -41 368 7 6384 179 8 11 chr3 39033669 39034504 -188490074 - L1PA14 LINE L1 0 6161 5326 2105 122 3 7 chr3 39034504 39034798 -188489780 - AluSq SINE Alu -20 293 1 6384 179 8 11 chr3 39034798 39036020 -188488558 - L1PA14 LINE L1 -835 5326 4102 1865 174 0 7 chr3 39036495 39036799 -188487779 - AluJb SINE Alu -8 304 3 1032 272 146 28 chr3 39037434 39037900 -188486678 - L2 LINE L2 -4 3309 2791 21 0 0 0 chr3 39038058 39038079 -188486499 + AT_rich Low_complexity Low_complexity 1 21 0 318 298 21 35 chr3 39038080 39038221 -188486357 - LTR16A1 LTR ERVL 0 457 319 189 0 0 0 chr3 39038418 39038439 -188486139 + (A)n Simple_repeat Simple_repeat 1 21 0 189 0 0 0 chr3 39038826 39038847 -188485731 + (A)n Simple_repeat Simple_repeat 1 21 0 572 266 0 19 chr3 39039030 39039184 -188485394 + MIR SINE MIR 102 252 -10 369 202 45 0 chr3 39040077 39040166 -188484412 + HAL1 LINE L1 48 140 -2367 248 250 75 90 chr3 39040187 39040399 -188484179 + HAL1 LINE L1 528 736 -1771 345 249 110 17 chr3 39040403 39040576 -188484002 + HAL1 LINE L1 2026 2214 -293 261 0 0 0 chr3 39040977 39041006 -188483572 + (CA)n Simple_repeat Simple_repeat 2 30 0 825 142 68 0 chr3 39041118 39041294 -188483284 - MER53 DNA DNA -1 188 1 422 212 8 34 chr3 39041879 39041997 -188482581 + L1ME2 LINE L1 6041 6155 -9 225 0 0 0 chr3 39042676 39042701 -188481877 + (A)n Simple_repeat Simple_repeat 1 25 0 204 207 52 17 chr3 39043092 39043150 -188481428 - MIR SINE MIR 0 262 203 1649 142 10 29 chr3 39043171 39043480 -188481098 + MER50 LTR ERV1 409 711 -23 1469 209 36 13 chr3 39043656 39044043 -188480535 - L1MB8 LINE L1 -6 6172 5777 3650 151 115 99 chr3 39044935 39045320 -188479258 + L1MC3 LINE L1 6706 7083 -702 350 281 10 0 chr3 39045320 39045416 -188479162 + MLT1F1 LTR MaLR 35 131 -436 3650 151 115 99 chr3 39045416 39045998 -188478580 + L1MC3 LINE L1 7083 7785 0 1456 119 194 4 chr3 39046626 39046878 -188477700 - AluSx SINE Alu -1 301 2 315 208 0 56 chr3 39047132 39047204 -188477374 + L2 LINE L2 3246 3313 0 382 337 16 67 chr3 39047554 39047747 -188476831 + MIR3 SINE MIR 20 202 -6 630 153 36 0 chr3 39047795 39047906 -188476672 - MIR SINE MIR -44 218 104 886 209 39 0 chr3 39048090 39048272 -188476306 + MER5A DNA MER1_type 1 189 0 856 141 0 8 chr3 39048455 39048583 -188475995 - FLAM_A SINE Alu -6 127 1 212 0 21 85 chr3 39048996 39049043 -188475535 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 1633 180 13 36 chr3 39049480 39049786 -188474792 + AluJo SINE Alu 1 299 -13 2379 93 0 0 chr3 39050279 39050579 -188473999 + AluSg SINE Alu 1 300 -10 350 184 40 0 chr3 39051496 39051572 -188473006 - MER103 DNA DNA -81 85 7 1204 104 5 15 chr3 39052137 39052338 -188472240 + L1MA5A LINE L1 6099 6297 0 420 153 0 14 chr3 39052374 39052446 -188472132 + Tigger2 DNA MER2_type 1 71 -2647 226 196 143 0 chr3 39052446 39052502 -188472076 - MER2 DNA MER2_type 0 345 282 * 849 246 6 0 chr3 39052480 39052655 -188471923 - MER8 DNA MER2_type -63 176 1 284 205 43 120 chr3 39052844 39052961 -188471617 - MLT1H LTR MaLR 0 549 442 499 291 42 6 chr3 39053976 39054141 -188470437 - MER5B DNA MER1_type -6 172 2 1034 178 100 59 chr3 39054287 39054608 -188469970 + MER46C DNA MER2_type 1 334 -4 626 277 32 7 chr3 39054740 39054895 -188469683 - MER91A DNA MER1_type -36 160 2 2259 113 3 0 chr3 39055277 39055588 -188468990 + AluSq SINE Alu 1 312 -1 272 317 73 24 chr3 39055617 39055740 -188468838 - MIR SINE MIR -128 134 6 539 254 7 0 chr3 39056427 39056565 -188468013 + L1ME3A LINE L1 6027 6165 -5 494 243 196 31 chr3 39056688 39057005 -188467573 + MLT1J1 LTR MaLR 71 439 -7 353 309 43 32 chr3 39057016 39057204 -188467374 + MLT1J LTR MaLR 25 214 -297 1120 269 72 48 chr3 39057881 39058379 -188466199 - MLT1H LTR MaLR -39 510 1 1879 170 13 10 chr3 39058659 39059148 -188465430 + AluJb SINE Alu 1 312 0 389 155 19 29 chr3 39059148 39059251 -188465327 + GA-rich Low_complexity Low_complexity 3 104 0 1110 226 60 103 chr3 39059403 39059840 -188464738 + MLT1H LTR MaLR 19 436 -113 2574 233 45 50 chr3 39059845 39060517 -188464061 - L1MCa LINE L1 -2252 4174 3507 2124 119 57 23 chr3 39060517 39060869 -188463709 - THE1B LTR MaLR 0 364 1 2574 233 45 50 chr3 39060869 39061257 -188463321 - L1MCa LINE L1 -2919 3507 3119 225 0 0 0 chr3 39061257 39061282 -188463296 + (TA)n Simple_repeat Simple_repeat 1 25 0 447 52 0 0 chr3 39062036 39062094 -188462484 + (TA)n Simple_repeat Simple_repeat 2 59 0 2143 136 0 7 chr3 39062094 39062403 -188462175 - AluSq SINE Alu -6 307 1 3824 224 86 29 chr3 39062412 39064536 -188460042 - L1MCa LINE L1 -3321 3105 839 256 222 14 14 chr3 39064609 39064681 -188459897 + LTR33A LTR ERVL 452 523 0 39 0 0 0 chr3 39065060 39065099 -188459479 + AT_rich Low_complexity Low_complexity 1 39 0 563 123 36 19 chr3 39065115 39065224 -188459354 + L1MC3 LINE L1 5744 5856 -488 2073 137 0 0 chr3 39065224 39065517 -188459061 + AluSq SINE Alu 1 293 -20 563 123 36 19 chr3 39065517 39065531 -188459047 + L1MC3 LINE L1 5856 5868 -476 536 234 30 60 chr3 39066247 39066414 -188458164 - LTR67 LTR ERVL -40 517 356 1459 187 26 32 chr3 39066486 39066886 -188457692 - MLT2D LTR ERVL -48 416 3 1095 241 17 4 chr3 39067035 39067406 -188457172 - LTR33 LTR ERVL -114 407 6 413 286 12 37 chr3 39067413 39067574 -188457004 - LTR67 LTR ERVL -394 163 7 4766 149 28 61 chr3 39068099 39068919 -188455659 - MER54B LTR ERVL 0 793 1 884 287 41 60 chr3 39069027 39069502 -188455076 + Charlie8 DNA MER1_type 1 460 -1957 416 313 36 0 chr3 39069747 39069859 -188454719 - L2 LINE L2 -4 3268 3153 867 275 24 9 chr3 39070071 39070365 -188454213 - MLT1I LTR MaLR -3 406 63 1995 229 32 75 chr3 39071546 39072169 -188452409 + LTR8 LTR ERV1 81 676 -15 236 305 37 12 chr3 39072606 39072688 -188451890 - L2 LINE L2 -58 3255 3172 2377 104 31 0 chr3 39072785 39073140 -188451438 + L1MA4 LINE L1 5663 6028 -272 982 140 0 12 chr3 39073141 39073305 -188451273 + L1MA4 LINE L1 6128 6289 -11 395 264 100 0 chr3 39076090 39076200 -188448378 - MLT1E2 LTR MaLR -38 588 468 1114 109 126 0 chr3 39076200 39076383 -188448195 - MER47A DNA MER2_type -130 236 31 345 258 77 67 chr3 39076448 39076747 -188447831 - L1ME4a LINE L1 -2 6119 5818 279 188 188 20 chr3 39076775 39076876 -188447702 - L1ME4a LINE L1 -12 6109 5992 468 241 116 55 chr3 39077006 39077205 -188447373 - L1ME4a LINE L1 -436 5685 5475 366 23 0 0 chr3 39078292 39078335 -188446243 + (TG)n Simple_repeat Simple_repeat 2 44 0 183 186 0 0 chr3 39079086 39079129 -188445449 + T-rich Low_complexity Low_complexity 1 43 0 964 256 152 35 chr3 39079536 39080029 -188444549 - MLT1G LTR MaLR -2 588 38 416 240 50 25 chr3 39080091 39080212 -188444366 + LTR16A1 LTR ERVL 334 457 0 470 237 7 72 chr3 39080398 39080537 -188444041 - MER5B DNA MER1_type -48 130 1 2248 108 3 0 chr3 39080541 39080846 -188443732 + AluSc SINE Alu 1 306 -3 569 177 54 68 chr3 39081808 39081955 -188442623 + MER104 DNA Tc2 36 180 0 216 0 0 0 chr3 39082217 39082241 -188442337 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1094 329 18 37 chr3 39082241 39082314 -188442264 + L1PB4 LINE L1 11 84 -6765 2272 93 0 0 chr3 39082314 39082605 -188441973 - AluSc SINE Alu -18 291 1 1094 329 18 37 chr3 39082605 39083021 -188441557 + L1PB4 LINE L1 84 491 -6358 9804 207 40 26 chr3 39083307 39087709 -188436869 + L1PB4 LINE L1 651 5116 -1732 223 263 0 25 chr3 39088941 39089021 -188435557 + A-rich Low_complexity Low_complexity 5 82 0 1683 149 78 0 chr3 39090156 39090425 -188434153 - AluSg SINE Alu -20 290 1 22 35 0 0 chr3 39091978 39092007 -188432571 + AT_rich Low_complexity Low_complexity 1 29 0 194 0 0 37 chr3 39092096 39092123 -188432455 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 229 65 0 0 chr3 39092457 39092503 -188432075 - LTR66 LTR ERVL -171 439 394 4698 174 15 13 chr3 39092532 39093473 -188431105 + L1PB4 LINE L1 5097 6039 -809 237 86 0 0 chr3 39093478 39093513 -188431065 + L1MA3 LINE L1 6271 6305 0 1688 154 43 14 chr3 39093516 39093795 -188430783 + AluSx SINE Alu 1 287 -25 2009 100 0 0 chr3 39093829 39094089 -188430489 + AluSq SINE Alu 1 260 -53 376 169 0 0 chr3 39094090 39094155 -188430423 + AluSp/q SINE Alu 232 296 -7 3849 170 54 37 chr3 39094170 39095014 -188429564 + L1PB4 LINE L1 5999 6853 -5 369 281 116 17 chr3 39095158 39095313 -188429265 + MER5A DNA MER1_type 7 189 0 2122 218 42 44 chr3 39095803 39095842 -188428736 + MLT1D LTR MaLR 1 39 -466 2115 154 61 6 chr3 39095842 39096185 -188428393 - MLT1A1 LTR MaLR -3 362 1 2122 218 42 44 chr3 39096185 39096649 -188427929 + MLT1D LTR MaLR 39 503 -2 336 285 106 50 chr3 39097282 39097461 -188427117 + LTR50 LTR ERVL 17 205 -590 251 192 39 0 chr3 39097733 39097785 -188426793 + LTR33A LTR ERVL 468 521 -2 448 301 38 48 chr3 39097994 39098203 -188426375 - LTR16A1 LTR ERVL -5 452 246 188 177 290 0 chr3 39098482 39098544 -188426034 - L2 LINE L2 -1 3271 3192 1256 217 54 28 chr3 39098910 39098951 -188425627 - MLT2E LTR ERVL -14 614 576 1911 174 80 21 chr3 39098951 39099325 -188425253 + MSTD LTR MaLR 1 396 0 1256 217 54 28 chr3 39099325 39099785 -188424793 - MLT2E LTR ERVL -52 576 1 860 226 65 37 chr3 39100187 39100404 -188424174 + MIR SINE MIR 2 224 -38 632 171 147 59 chr3 39100548 39100718 -188423860 - MER3 DNA MER1_type -24 185 1 388 209 33 27 chr3 39101341 39101463 -188423115 + L1MC4a LINE L1 5484 5603 -518 1361 217 37 167 chr3 39101493 39102330 -188422248 + MER21B LTR ERV1 6 733 -130 748 256 0 50 chr3 39102312 39102511 -188422067 + MER63A DNA MER1_type 17 205 -5 * 796 296 60 28 chr3 39102520 39102937 -188421641 + L1MC4a LINE L1 5603 6038 -83 960 243 63 28 chr3 39103227 39103511 -188421067 - MER102a DNA MER1_type -2 328 35 223 286 0 0 chr3 39104816 39104872 -188419706 - MIR SINE MIR -108 154 99 801 253 50 17 chr3 39105452 39105693 -188418885 - L2 LINE L2 0 3313 3065 1278 223 32 72 chr3 39105707 39106083 -188418495 - MLT1A2 LTR MaLR -13 361 1 2194 230 12 68 chr3 39106117 39106691 -188417887 + MLT1F LTR MaLR 1 542 0 403 332 68 23 chr3 39106693 39106913 -188417665 - L2 LINE L2 -280 3033 2804 2397 268 47 17 chr3 39107042 39107998 -188416580 + L2 LINE L2 2177 3103 -210 185 62 0 31 chr3 39107998 39108030 -188416548 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2301 135 33 28 chr3 39108040 39108402 -188416176 + THE1B LTR MaLR 1 364 0 2397 268 47 17 chr3 39108402 39108537 -188416041 + L2 LINE L2 3111 3313 0 1346 68 0 11 chr3 39109446 39109623 -188414955 - AluY SINE Alu -3 308 134 21 0 0 0 chr3 39110210 39110231 -188414347 + AT_rich Low_complexity Low_complexity 1 21 0 757 272 41 66 chr3 39110479 39111041 -188413537 + L1M4 LINE L1 4802 5349 -797 277 244 100 11 chr3 39111479 39111569 -188413009 + MLT1K LTR MaLR 26 123 -465 530 250 87 53 chr3 39111742 39111950 -188412628 + MLT1K LTR MaLR 374 588 0 732 304 8 4 chr3 39113000 39113243 -188411335 + MIR SINE MIR 19 262 0 626 305 16 5 chr3 39113858 39114048 -188410530 - MIR SINE MIR -6 256 65 260 295 74 0 chr3 39114336 39114431 -188410147 - MIR SINE MIR -59 203 102 274 305 30 23 chr3 39114521 39114652 -188409926 + Charlie8 DNA MER1_type 89 220 -2197 735 221 111 42 chr3 39115061 39115468 -188409110 + MLT1J LTR MaLR 27 428 -22 417 309 149 25 chr3 39115809 39116285 -188408293 + L2 LINE L2 1599 2133 -1181 2395 93 0 3 chr3 39316451 39316762 -188207816 + AluSx SINE Alu 1 310 -2 1883 133 0 29 chr3 39317443 39317751 -188206827 + AluSq SINE Alu 1 299 -14 409 132 0 0 chr3 39317931 39317999 -188206579 + MER2 DNA MER2_type 139 206 -139 363 276 0 0 chr3 39318026 39318102 -188206476 + MER2 DNA MER2_type 270 345 0 441 0 0 0 chr3 39318987 39319036 -188205542 + (CA)n Simple_repeat Simple_repeat 2 50 0 324 0 0 0 chr3 39319120 39319156 -188205422 + (CA)n Simple_repeat Simple_repeat 2 37 0 224 180 33 0 chr3 39319184 39319245 -188205333 + (CA)n Simple_repeat Simple_repeat 2 64 0 1628 169 74 0 chr3 39319649 39319933 -188204645 - AluJo SINE Alu -7 305 1 587 328 16 19 chr3 39321530 39321786 -188202792 - L1ME LINE L1 -516 5605 5351 326 323 102 0 chr3 39321825 39321992 -188202586 + L1ME4a LINE L1 5766 5949 -172 1614 105 4 9 chr3 39322703 39322932 -188201646 + AluSg/x SINE Alu 83 310 0 502 221 38 8 chr3 39322949 39323080 -188201498 + L1ME4a LINE L1 5976 6110 -11 1044 143 18 18 chr3 39323093 39323261 -188201317 - FRAM SINE Alu -4 172 5 2250 95 14 0 chr3 39324286 39324580 -188199998 - AluSx SINE Alu -14 298 1 184 250 0 0 chr3 39324791 39324835 -188199743 - L2 LINE L2 -11 3261 3218 * 256 302 107 31 chr3 39324805 39324964 -188199614 - MIR SINE MIR -19 243 73 1510 169 95 21 chr3 39325181 39325519 -188199059 + MLT1A1 LTR MaLR 1 363 -2 233 339 0 17 chr3 39325694 39325812 -188198766 + L1M LINE L1 5254 5369 -2439 394 241 106 53 chr3 39326168 39326338 -188198240 - MIR3 SINE MIR 0 208 30 270 242 164 57 chr3 39326583 39326720 -188197858 - L1ME4a LINE L1 -155 5966 5845 1837 154 0 18 chr3 39326720 39326999 -188197579 + AluSx SINE Alu 9 282 -30 270 242 164 57 chr3 39326999 39327046 -188197532 - L1ME4a LINE L1 -276 5845 5804 1789 165 0 0 chr3 39327046 39327313 -188197265 + AluSx SINE Alu 33 299 -13 270 242 164 57 chr3 39327313 39327445 -188197133 - L1ME4a LINE L1 -317 5804 5615 326 110 61 24 chr3 39327463 39327545 -188197033 + CT-rich Low_complexity Low_complexity 1 85 0 1981 119 0 4 chr3 39327548 39327687 -188196891 - AluSx SINE Alu -44 268 129 216 0 0 0 chr3 39327687 39327711 -188196867 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1981 119 0 4 chr3 39327711 39327840 -188196738 - AluSx SINE Alu -183 129 1 24 0 0 0 chr3 39328008 39328032 -188196546 + AT_rich Low_complexity Low_complexity 1 24 0 324 0 0 0 chr3 39328037 39328073 -188196505 + (TA)n Simple_repeat Simple_repeat 2 37 0 2058 151 0 0 chr3 39328076 39328388 -188196190 - AluSx SINE Alu 0 312 1 14165 213 32 11 chr3 39328388 39328749 -188195829 - L1PB1 LINE L1 -5 7565 7213 389 97 14 0 chr3 39328749 39328821 -188195757 + (TA)n Simple_repeat Simple_repeat 1 73 0 14165 213 32 11 chr3 39328821 39331594 -188192984 - L1PB1 LINE L1 -357 7213 3903 2408 68 7 3 chr3 39331594 39331886 -188192692 - AluY SINE Alu -18 293 1 14165 213 32 11 chr3 39331886 39333471 -188191107 - L1PB1 LINE L1 -3667 3903 2353 4882 176 70 17 chr3 39333480 39334409 -188190169 - L1PB1 LINE L1 -5883 1683 706 3900 177 54 5 chr3 39334942 39335699 -188188879 - L1MB5 LINE L1 -8 6166 5373 1889 280 162 13 chr3 39335747 39336665 -188187913 + L2 LINE L2 57 1111 -2203 2232 94 0 27 chr3 39336712 39337010 -188187568 - AluSx SINE Alu -20 292 3 206 269 19 0 chr3 39337014 39337066 -188187512 - L2 LINE L2 -234 3079 3027 2020 128 20 0 chr3 39337067 39337365 -188187213 - AluSx SINE Alu 0 312 9 806 197 22 22 chr3 39338291 39338469 -188186109 + L1M3 LINE L1 5478 5655 -525 2370 88 0 7 chr3 39338474 39338770 -188185808 + AluSx SINE Alu 1 294 -18 280 87 43 0 chr3 39338770 39338816 -188185762 + L1MB4 LINE L1 6131 6178 -2 399 228 81 0 chr3 39342042 39342165 -188182413 + Charlie8 DNA MER1_type 38 170 -2247 551 163 31 75 chr3 39343423 39343583 -188180995 - MIR SINE MIR -46 216 64 1509 167 118 7 chr3 39345479 39345784 -188178794 - MER44D DNA MER2_type 0 609 1 1366 171 5 0 chr3 39346490 39346707 -188177871 - MER58A DNA MER1_type 0 224 7 248 286 86 43 chr3 39347054 39347194 -188177384 - L1ME LINE L1 -574 5547 5402 529 173 0 18 chr3 39347846 39347956 -188176622 + L1MD3 LINE L1 7758 7865 -130 776 163 7 7 chr3 39348000 39348141 -188176437 + L1PB1 LINE L1 5998 6138 -13 21 0 0 0 chr3 39348143 39348164 -188176414 + AT_rich Low_complexity Low_complexity 1 21 0 857 182 136 6 chr3 39348807 39348983 -188175595 + MER63A DNA MER1_type 2 200 -10 301 226 0 0 chr3 39350001 39350063 -188174515 - L2 LINE L2 -50 3263 3202 313 323 85 15 chr3 39350211 39350412 -188174166 - L2 LINE L2 -337 2977 2763 281 243 110 44 chr3 39351015 39351151 -188173427 - MIR SINE MIR -20 242 98 222 37 0 0 chr3 39351215 39351239 -188173339 + (GGGAGA)n Simple_repeat Simple_repeat 1 51 0 222 37 0 0 chr3 39351239 39351266 -188173312 + (GGGAGA)n Simple_repeat Simple_repeat 5 31 0 226 236 18 0 chr3 39351274 39351329 -188173249 + GA-rich Low_complexity Low_complexity 4 59 0 1757 209 83 5 chr3 39352495 39352658 -188171920 + MER47B DNA MER2_type 1 150 -2173 1469 142 63 32 chr3 39352658 39352911 -188171667 - AluJo SINE Alu -17 295 35 1757 209 83 5 chr3 39352911 39352927 -188171651 + MER47B DNA MER2_type 150 163 -2160 2060 151 56 58 chr3 39352927 39353137 -188171441 + MSTB1 LTR MaLR 4 213 -219 1957 130 0 21 chr3 39353137 39353421 -188171157 + AluJb SINE Alu 7 284 -28 539 29 0 14 chr3 39353421 39353491 -188171087 + (TAGA)n Simple_repeat Simple_repeat 4 72 0 2060 151 56 58 chr3 39353491 39353709 -188170869 + MSTB1 LTR MaLR 211 432 0 1757 209 83 5 chr3 39353709 39353915 -188170663 + MER47B DNA MER2_type 163 417 -1 347 189 151 19 chr3 39354270 39354376 -188170202 + MIR SINE MIR 65 184 -78 2606 58 0 3 chr3 39354523 39354832 -188169746 + AluY SINE Alu 1 308 -3 2931 7 0 0 chr3 39356659 39356968 -188167610 + AluYb8 SINE Alu 1 309 -9 374 0 0 21 chr3 39357642 39357689 -188166889 + (TG)n Simple_repeat Simple_repeat 1 46 0 2521 161 61 36 chr3 39358362 39358870 -188165708 + MER41B LTR ERV1 114 475 -11 1682 188 16 10 chr3 39360071 39360379 -188164199 + AluJo SINE Alu 1 310 -2 279 79 0 0 chr3 39361189 39361227 -188163351 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 283 256 49 0 chr3 39361230 39361312 -188163266 - L2 LINE L2 -9 3304 3219 1779 159 6 62 chr3 39361375 39361695 -188162883 + AluJb SINE Alu 1 302 -10 329 314 16 8 chr3 39362185 39362306 -188162272 + CT-rich Low_complexity Low_complexity 3 124 0 1756 142 37 24 chr3 39363942 39364238 -188160340 + AluJb SINE Alu 1 300 -12 2177 118 14 0 chr3 39364879 39365176 -188159402 - AluSx SINE Alu -11 301 1 2265 121 0 0 chr3 39365221 39365518 -188159060 - AluSg SINE Alu -12 298 2 465 308 107 18 chr3 39365634 39365962 -188158616 + L1ME4a LINE L1 5494 5850 -271 1900 148 48 9 chr3 39366036 39366367 -188158211 - MER2 DNA MER2_type 0 344 1 401 159 16 0 chr3 39366372 39366435 -188158143 + Tigger2 DNA MER2_type 4 67 -2651 * 2011 118 101 27 chr3 39366427 39366649 -188157929 + Tigger2 DNA MER2_type 2273 2534 -184 2155 129 10 6 chr3 39366649 39366960 -188157618 + AluSx SINE Alu 1 312 0 2011 118 101 27 chr3 39366960 39367102 -188157476 + Tigger2 DNA MER2_type 2534 2664 -54 2862 134 92 29 chr3 39367658 39367699 -188156879 - MER34C LTR ERV1 -2 583 546 4492 152 40 4 chr3 39367699 39368396 -188156182 - MER72 LTR ERV1 0 722 1 2862 134 92 29 chr3 39368396 39368899 -188155679 - MER34C LTR ERV1 -39 546 5 1475 202 75 62 chr3 39369115 39369570 -188155008 - MLT1C LTR MaLR -4 463 3 379 241 106 7 chr3 39369926 39370067 -188154511 - L1MC5 LINE L1 -48 7913 7759 337 306 66 10 chr3 39370077 39370273 -188154305 + L1ME4a LINE L1 5861 6067 -54 1785 219 13 11 chr3 39371537 39371916 -188152662 + L1MDb LINE L1 659 1038 -5371 941 182 19 0 chr3 39371925 39372084 -188152494 + MER58B DNA MER1_type 180 341 0 1286 235 106 37 chr3 39372776 39373210 -188151368 - MER110A LTR ERV1 0 468 5 1966 120 27 20 chr3 39373226 39373525 -188151053 + AluSp SINE Alu 1 301 -12 183 268 0 0 chr3 39374953 39374994 -188149584 - L2 LINE L2 -12 3301 3261 293 281 75 20 chr3 39375080 39375226 -188149352 - MER20 DNA MER1_type -1 218 65 302 0 0 26 chr3 39375296 39375335 -188149243 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 1665 159 11 11 chr3 39375336 39375519 -188149059 - AluJb SINE Alu 0 310 125 207 24 24 48 chr3 39375519 39375561 -188149017 + (TTG)n Simple_repeat Simple_repeat 2 42 0 1665 159 11 11 chr3 39375561 39375687 -188148891 - AluJb SINE Alu -184 126 1 308 261 113 91 chr3 39376339 39376509 -188148069 - L2 LINE L2 -58 3255 3077 2028 122 3 7 chr3 39376509 39376812 -188147766 - AluSx SINE Alu -10 302 1 308 261 113 91 chr3 39376812 39376871 -188147707 - L2 LINE L2 -236 3077 3021 326 41 0 20 chr3 39377545 39377594 -188146984 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 21 0 0 0 chr3 39379991 39380012 -188144566 + AT_rich Low_complexity Low_complexity 1 21 0 314 246 8 76 chr3 39382788 39382906 -188141672 + L2 LINE L2 2904 3013 -300 1991 160 0 0 chr3 39383248 39383542 -188141036 + AluJo SINE Alu 3 296 -16 868 121 8 30 chr3 39383605 39383737 -188140841 - FLAM_C SINE Alu -4 129 1 2333 87 10 7 chr3 39384309 39384618 -188139960 + AluY SINE Alu 1 310 -1 1140 209 146 92 chr3 39384804 39385291 -188139287 - MER34B LTR ERV1 -48 517 5 229 321 69 63 chr3 39385303 39385462 -188139116 - MIR3 SINE MIR -46 162 3 1795 151 36 4 chr3 39386291 39386569 -188138009 - AluJb SINE Alu -25 287 1 870 255 55 19 chr3 39386788 39387098 -188137480 + L1MC4a LINE L1 5558 5878 -1930 1061 116 74 5 chr3 39387183 39387372 -188137206 - L1MA8 LINE L1 -5 6286 6085 2386 129 6 18 chr3 39387949 39388290 -188136288 - MER1B DNA MER1_type 0 337 1 546 247 140 69 chr3 39388720 39389304 -188135274 + L2 LINE L2 2630 3268 -45 211 216 0 0 chr3 39389316 39389353 -188135225 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 198 161 196 18 chr3 39390375 39390431 -188134147 + MIR3 SINE MIR 91 156 -52 2690 258 108 36 chr3 39391286 39392732 -188131846 + L2 LINE L2 1784 3312 -1 1665 158 4 4 chr3 39395067 39395327 -188129251 - AluSx SINE Alu -15 297 38 1417 190 125 67 chr3 39395714 39396146 -188128432 + MSTB2 LTR MaLR 1 457 0 23 33 0 0 chr3 39398055 39398085 -188126493 + AT_rich Low_complexity Low_complexity 1 30 0 206 299 90 0 chr3 39398110 39398177 -188126401 - MIR3 SINE MIR -8 200 128 512 196 176 0 chr3 39398382 39398484 -188126094 + FLAM_C SINE Alu 1 120 -23 297 0 0 0 chr3 39398484 39398517 -188126061 + (TAA)n Simple_repeat Simple_repeat 2 34 0 220 210 74 25 chr3 39398699 39398780 -188125798 + L2 LINE L2 2625 2709 -605 351 0 0 0 chr3 39398857 39398874 -188125704 + (CA)n Simple_repeat Simple_repeat 1 56 0 351 0 0 0 chr3 39398874 39398913 -188125665 + (CA)n Simple_repeat Simple_repeat 1 39 0 1001 209 91 88 chr3 39399655 39400119 -188124459 + L1MC4 LINE L1 7450 7914 -128 2468 98 42 31 chr3 39400119 39400475 -188124103 + THE1B LTR MaLR 1 360 -4 231 273 0 30 chr3 39400547 39400613 -188123965 + GA-rich Low_complexity Low_complexity 3 66 0 345 200 40 48 chr3 39400613 39400677 -188123901 + L1MC4 LINE L1 7919 7983 -59 2412 95 174 8 chr3 39400677 39401044 -188123534 + MSTA LTR MaLR 1 428 0 345 200 40 48 chr3 39401044 39401104 -188123474 + L1MC4 LINE L1 7983 8042 0 1269 164 81 77 chr3 39402028 39402338 -188122240 + AluJo SINE Alu 1 311 -1 385 228 108 44 chr3 39402802 39402960 -188121618 + MIR SINE MIR 76 243 -19 454 254 119 11 chr3 39403256 39403441 -188121137 - MIR SINE MIR -35 227 23 301 321 33 54 chr3 39403901 39404085 -188120493 + L1ME LINE L1 5638 5817 -304 790 272 52 0 chr3 39404163 39404354 -188120224 + MER58A DNA MER1_type 1 201 -23 1809 174 0 7 chr3 39404369 39404650 -188119928 - AluJo SINE Alu -23 289 11 2268 102 0 13 chr3 39404679 39404992 -188119586 + AluSx SINE Alu 1 309 -3 23 54 0 0 chr3 39405050 39405087 -188119491 + AT_rich Low_complexity Low_complexity 1 37 0 228 211 127 14 chr3 39405094 39405165 -188119413 - L1ME LINE L1 -510 5611 5533 2322 98 20 0 chr3 39405337 39405643 -188118935 - AluSp SINE Alu -1 312 1 2299 229 103 143 chr3 39405909 39407572 -188117006 + L2 LINE L2 812 2407 -907 554 273 126 39 chr3 39407601 39407832 -188116746 + MLT1H LTR MaLR 20 298 -251 219 117 83 50 chr3 39408111 39408171 -188116407 + A-rich Low_complexity Low_complexity 3 64 0 555 267 93 40 chr3 39408179 39408364 -188116214 + L2 LINE L2 2407 2616 -698 2354 86 0 3 chr3 39408364 39408656 -188115922 - AluSg SINE Alu -19 291 1 555 267 93 40 chr3 39408656 39408770 -188115808 + L2 LINE L2 2616 2722 -592 468 214 205 14 chr3 39408922 39409132 -188115446 - L1M4c LINE L1 -5077 1307 1058 5173 141 88 14 chr3 39409146 39410240 -188114338 - L1MA4A LINE L1 0 7005 5829 1399 184 8 8 chr3 39410341 39410586 -188113992 - AluJb SINE Alu -45 267 23 9054 164 55 88 chr3 39410587 39411848 -188112730 - L1MA4A LINE L1 -1296 5552 4251 655 202 0 0 chr3 39411848 39411957 -188112621 - FLAM_A SINE Alu -10 132 24 236 149 27 135 chr3 39411957 39412031 -188112547 - AluSp SINE Alu -123 180 115 9054 164 55 88 chr3 39412031 39412425 -188112153 - L1MA4A LINE L1 -2596 4252 3847 2160 110 0 0 chr3 39412425 39412717 -188111861 - AluSg SINE Alu -18 292 1 9054 164 55 88 chr3 39412717 39413298 -188111280 - L1MA4A LINE L1 -3001 3847 3212 8176 210 99 15 chr3 39413298 39413518 -188111060 - L1MA4A LINE L1 -3842 3006 2806 2261 104 7 0 chr3 39413518 39413826 -188110752 - AluY SINE Alu -1 310 1 8176 210 99 15 chr3 39413826 39416283 -188108295 - L1MA4A LINE L1 -4042 2806 4 523 196 191 16 chr3 39416326 39416555 -188108023 - L1M4c LINE L1 -4971 1332 777 242 256 76 87 chr3 39417654 39417826 -188106752 - L1ME3 LINE L1 -28 6134 5965 259 254 153 34 chr3 39418003 39418180 -188106398 - L1ME3 LINE L1 -475 5695 5498 302 147 0 59 chr3 39418275 39418343 -188106235 - L1ME3 LINE L1 -863 5283 5220 973 204 114 29 chr3 39418400 39418708 -188105870 + L1M4 LINE L1 4701 5034 -1112 857 168 8 0 chr3 39419112 39419243 -188105335 - FRAM SINE Alu -47 129 1 2321 62 0 36 chr3 39419269 39419575 -188105003 + AluSg SINE Alu 1 295 -15 1601 98 18 0 chr3 39419577 39419802 -188104776 + AluSg/x SINE Alu 77 305 -5 654 248 105 0 chr3 39420433 39420589 -188103989 + FRAM SINE Alu 1 170 0 259 266 59 59 chr3 39420896 39421107 -188103471 + L1ME1 LINE L1 1514 1771 -4863 * 508 263 94 91 chr3 39421100 39421492 -188103086 + L1ME1 LINE L1 2774 3163 -3481 2357 98 0 6 chr3 39421492 39421807 -188102771 + AluSq SINE Alu 1 313 0 508 263 94 91 chr3 39421807 39422694 -188101884 + L1ME1 LINE L1 3163 4057 -2587 977 261 164 44 chr3 39422701 39423832 -188100746 + L1ME1 LINE L1 4305 5588 -1056 408 242 54 89 chr3 39424030 39424645 -188099933 + L1ME1 LINE L1 5914 6608 -60 1823 118 8 0 chr3 39424795 39425058 -188099520 + AluSg SINE Alu 46 310 0 628 268 85 24 chr3 39425131 39425377 -188099201 + L2 LINE L2 1546 1806 -1508 2552 60 7 0 chr3 39425377 39425679 -188098899 - AluSq SINE Alu -9 304 1 330 264 57 9 chr3 39425875 39425981 -188098597 + L1MC5 LINE L1 7317 7427 -534 387 264 28 0 chr3 39426053 39426159 -188098419 - MIR SINE MIR -21 241 133 749 184 145 6 chr3 39426159 39426338 -188098240 - MER82 DNA MER2_type -251 402 199 863 228 66 0 chr3 39426714 39426911 -188097667 - MER82 DNA MER2_type 0 653 444 286 268 78 56 chr3 39426942 39427084 -188097494 + MIR SINE MIR 2 146 -116 343 237 40 0 chr3 39427161 39427237 -188097341 - MER82 DNA MER2_type -574 79 1 877 147 7 7 chr3 39427356 39427499 -188097079 - MER82 DNA MER2_type -510 143 1 5329 66 31 1 chr3 39427629 39428277 -188096301 - PABL_B LTR ERV1 0 667 1 306 233 27 0 chr3 39428304 39428377 -188096201 - MIR SINE MIR -10 252 178 683 265 39 11 chr3 39428413 39428594 -188095984 - MIR SINE MIR -7 255 70 2372 85 3 0 chr3 39428762 39429056 -188095522 - AluSp SINE Alu -18 295 1 242 248 51 0 chr3 39429933 39430070 -188094508 + (TATAA)n Simple_repeat Simple_repeat 1 144 0 2401 89 0 6 chr3 39430085 39430400 -188094178 - AluSp SINE Alu 0 313 1 2404 96 0 0 chr3 39431003 39431304 -188093274 - AluSc SINE Alu -8 301 1 1917 144 38 27 chr3 39431445 39431789 -188092789 + THE1B LTR MaLR 1 428 0 2182 125 7 0 chr3 39432775 39433080 -188091498 - AluSx SINE Alu -5 307 1 2342 97 10 0 chr3 39434000 39434309 -188090269 + AluSx SINE Alu 1 312 0 1074 207 55 12 chr3 39434976 39435232 -188089346 + L1MC4 LINE L1 7765 8031 -11 388 274 77 0 chr3 39435384 39435501 -188089077 + MIR SINE MIR 46 171 -91 2197 92 3 3 chr3 39436152 39436436 -188088142 + AluSp SINE Alu 15 298 -15 1124 43 0 7 chr3 39436437 39436577 -188088001 + L1PA4 LINE L1 5865 6003 -152 797 189 90 56 chr3 39438344 39438577 -188086001 - L1ME3 LINE L1 -43 6119 5879 746 234 52 5 chr3 39438602 39438794 -188085784 - L1ME3 LINE L1 -349 5813 5613 2460 88 0 0 chr3 39439463 39439770 -188084808 - AluSx SINE Alu -5 307 1 1049 160 128 0 chr3 39440444 39440631 -188083947 - MER46A DNA MER2_type 0 236 26 23 105 0 0 chr3 39440815 39440901 -188083677 + AT_rich Low_complexity Low_complexity 1 86 0 22 0 0 0 chr3 39443622 39443644 -188080934 + AT_rich Low_complexity Low_complexity 1 22 0 338 222 0 0 chr3 39443649 39443712 -188080866 - MER5A DNA MER1_type -83 106 44 847 214 34 6 chr3 39443745 39443923 -188080655 - MER5A DNA MER1_type 0 189 7 1078 149 47 28 chr3 39444114 39444328 -188080250 + L1MA2 LINE L1 6087 6304 0 7325 258 105 30 chr3 39445314 39446075 -188078503 + L1MB7 LINE L1 1325 2027 -4389 1998 147 7 3 chr3 39446075 39446374 -188078204 - AluSx SINE Alu -12 300 1 7325 258 105 30 chr3 39446374 39448391 -188076187 + L1MB7 LINE L1 2027 3890 -2526 1119 188 0 0 chr3 39448391 39448556 -188076022 - FAM SINE Alu -10 165 1 7325 258 105 30 chr3 39448556 39449867 -188074711 + L1MB7 LINE L1 3890 5891 -525 2268 122 0 3 chr3 39449872 39450184 -188074394 + AluSx SINE Alu 1 311 -1 852 295 80 23 chr3 39450185 39450767 -188073811 + L2 LINE L2 2707 3312 -1 293 257 100 43 chr3 39450875 39451015 -188073563 + L2 LINE L2 2673 2820 -494 1050 208 0 0 chr3 39451238 39451416 -188073162 - MER45A DNA AcHobo 0 178 1 527 148 87 17 chr3 39452269 39452384 -188072194 + MER112 DNA MER1_type 132 254 -6 864 141 0 49 chr3 39459797 39459939 -188064639 - AluJo SINE Alu -177 135 1 225 240 0 40 chr3 39461274 39461349 -188063229 + A-rich Low_complexity Low_complexity 2 73 0 217 194 65 81 chr3 39461516 39461578 -188063000 - L2 LINE L2 -26 3246 3186 315 344 8 15 chr3 39461872 39462003 -188062575 + MIR SINE MIR 119 248 -14 275 371 0 0 chr3 39462971 39463103 -188061475 + MER117 DNA MER1_type 39 170 -27 262 243 94 87 chr3 39463225 39463513 -188061065 + L1MC3 LINE L1 5815 6104 -1681 * 1218 190 78 18 chr3 39463305 39463589 -188060989 + L1MB7 LINE L1 5884 6184 0 546 285 13 7 chr3 39463848 39463999 -188060579 + L2 LINE L2 2169 2320 -994 2017 216 65 17 chr3 39464002 39464464 -188060114 + MLT1D LTR MaLR 4 487 -18 1481 260 139 33 chr3 39464478 39465078 -188059500 + L2 LINE L2 2320 2855 -458 187 53 26 26 chr3 39465078 39465116 -188059462 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 2047 129 0 0 chr3 39465118 39465398 -188059180 - AluSx SINE Alu -32 280 1 1481 260 139 33 chr3 39465398 39465653 -188058925 + L2 LINE L2 2855 3274 -39 299 57 0 0 chr3 39466642 39466677 -188057901 + MER4E LTR ERV1 655 689 -77 198 0 0 0 chr3 39466677 39466699 -188057879 + (A)n Simple_repeat Simple_repeat 1 22 0 812 204 149 0 chr3 39466852 39467033 -188057545 - MER3 DNA MER1_type -1 208 1 528 193 34 0 chr3 39467767 39467886 -188056692 + MER5A DNA MER1_type 16 138 -51 308 231 13 0 chr3 39467916 39467994 -188056584 - L1ME2 LINE L1 -4 6160 6082 689 183 38 0 chr3 39468022 39468153 -188056425 - L1MB2 LINE L1 -54 6117 5982 195 244 0 0 chr3 39468156 39468197 -188056381 + MER5A DNA MER1_type 143 183 -6 220 121 0 0 chr3 39468871 39468904 -188055674 - MIR SINE MIR -11 251 219 2293 122 0 0 chr3 39469817 39470128 -188054450 - AluY SINE Alu 0 311 1 753 269 67 97 chr3 39471042 39471757 -188052821 + L1MC4a LINE L1 5266 5959 -1849 23 0 0 0 chr3 39471757 39471780 -188052798 + AT_rich Low_complexity Low_complexity 1 23 0 1981 141 117 69 chr3 39472291 39472316 -188052262 + MLT1D LTR MaLR 5 27 -478 1968 122 62 3 chr3 39472316 39472604 -188051974 + AluSx SINE Alu 1 305 -7 1981 141 117 69 chr3 39472604 39473055 -188051523 + MLT1D LTR MaLR 27 504 -1 193 258 0 76 chr3 39473482 39473548 -188051030 - L2 LINE L2 -11 3261 3201 25 83 0 0 chr3 39474560 39474620 -188049958 + AT_rich Low_complexity Low_complexity 1 60 0 288 0 0 0 chr3 39475239 39475271 -188049307 + (CA)n Simple_repeat Simple_repeat 2 33 0 22 35 0 0 chr3 39475309 39475338 -188049240 + AT_rich Low_complexity Low_complexity 1 29 0 637 301 143 49 chr3 39477741 39478002 -188046576 + MLT1L LTR MaLR 1 236 -379 2242 110 3 7 chr3 39478002 39478312 -188046266 - AluSc SINE Alu 0 309 1 637 301 143 49 chr3 39478312 39478530 -188046048 + MLT1L LTR MaLR 236 432 -183 234 0 0 0 chr3 39478530 39478556 -188046022 + (TTA)n Simple_repeat Simple_repeat 2 27 0 1518 193 44 4 chr3 39478559 39478829 -188045749 - AluJb SINE Alu -29 283 3 637 301 143 49 chr3 39478829 39478898 -188045680 + MLT1L LTR MaLR 433 606 -9 1117 156 138 45 chr3 39480208 39480497 -188044081 + L1ME1 LINE L1 5739 6054 -112 1341 145 18 23 chr3 39480497 39480718 -188043860 - MER46A DNA MER2_type 0 236 17 348 183 26 0 chr3 39480773 39480859 -188043719 + L1ME1 LINE L1 6089 6184 0 268 164 18 18 chr3 39481012 39481067 -188043511 - LTR33A LTR ERVL -25 498 444 2157 112 3 14 chr3 39481123 39481417 -188043161 - AluSg SINE Alu -19 291 1 2165 99 16 35 chr3 39481759 39482073 -188042505 + AluSc SINE Alu 1 308 -1 2385 95 0 0 chr3 39483179 39483485 -188041093 - AluSg SINE Alu -4 306 1 225 0 0 0 chr3 39485396 39485421 -188039157 + (T)n Simple_repeat Simple_repeat 1 25 0 2484 57 10 3 chr3 39485443 39485739 -188038839 + AluY SINE Alu 1 298 -13 1822 173 0 10 chr3 39486168 39486469 -188038109 + AluJb SINE Alu 1 298 -14 1774 174 0 17 chr3 39486865 39487164 -188037414 + AluJb SINE Alu 1 294 -18 805 331 49 39 chr3 39487227 39487713 -188036865 + L2 LINE L2 2819 3309 -4 936 161 1 105 chr3 39487769 39488024 -188036554 + L1MB2 LINE L1 5935 6164 -7 1181 193 15 0 chr3 39488416 39488618 -188035960 + AluJo SINE Alu 87 291 -21 2302 91 0 26 chr3 39489422 39489730 -188034848 + AluSx SINE Alu 1 300 -12 625 264 137 18 chr3 39490257 39490484 -188034094 - MIR SINE MIR 0 262 9 229 207 27 140 chr3 39490528 39490678 -188033900 + HAL1b LINE L1 597 729 -619 481 181 14 116 chr3 39490678 39490773 -188033805 + MER96B DNA MER1_type? 1 79 -338 950 223 6 0 chr3 39490773 39490939 -188033639 - FAM SINE Alu -8 167 1 481 181 14 116 chr3 39490939 39490981 -188033597 + MER96B DNA MER1_type? 79 124 -293 201 174 43 14 chr3 39490986 39491055 -188033523 + GA-rich Low_complexity Low_complexity 3 73 0 715 217 89 84 chr3 39491109 39491533 -188033045 + MLT1A2 LTR MaLR 1 374 0 691 148 15 163 chr3 39491533 39491736 -188032842 - MER96B DNA MER1_type? -242 175 3 2064 115 14 7 chr3 39491758 39492054 -188032524 - AluSg SINE Alu -12 298 1 21 0 0 0 chr3 39492490 39492511 -188032067 + GC_rich Low_complexity Low_complexity 1 21 0 1488 167 69 4 chr3 39492928 39493203 -188031375 + AluSx SINE Alu 1 293 -19 201 39 0 0 chr3 39493358 39493384 -188031194 + (A)n Simple_repeat Simple_repeat 1 26 0 960 161 0 0 chr3 39494631 39494774 -188029804 + AluSg/x SINE Alu 132 274 -38 707 106 120 148 chr3 39494790 39494938 -188029640 - Tigger2 DNA MER2_type -2507 211 69 2127 108 3 0 chr3 39494938 39495225 -188029353 - AluSx SINE Alu -24 288 1 707 106 120 148 chr3 39495225 39495293 -188029285 - Tigger2 DNA MER2_type -2649 69 1 632 134 17 17 chr3 39495485 39495604 -188028974 + L1MB2 LINE L1 6042 6160 -11 1727 133 32 7 chr3 39595765 39596043 -187928535 - AluSg SINE Alu -13 297 13 8598 104 30 12 chr3 39596043 39597298 -187927280 + MER41B-int LTR ERV1 4669 5946 0 3768 138 44 13 chr3 39597298 39597914 -187926664 + MER41B LTR ERV1 1 635 0 2251 134 24 21 chr3 39597950 39598324 -187926254 - THE1C LTR MaLR 0 375 1 380 245 80 18 chr3 39598728 39598891 -187925687 + L1MC4 LINE L1 7842 8014 -28 2045 139 14 0 chr3 39598891 39599186 -187925392 - AluSx SINE Alu -13 299 1 1369 171 13 81 chr3 39599238 39599548 -187925030 - AluJo SINE Alu -23 289 1 2069 124 7 0 chr3 39599576 39599858 -187924720 + AluSg SINE Alu 1 284 -26 2251 80 0 14 chr3 39599866 39600185 -187924393 + AluSg SINE Alu 1 315 0 1891 157 20 0 chr3 39600195 39600488 -187924090 + AluJo SINE Alu 1 299 -13 571 211 111 80 chr3 39600488 39600687 -187923891 + L1ME3A LINE L1 5939 6143 -27 2119 92 3 57 chr3 39601233 39601549 -187923029 + AluSp SINE Alu 1 299 -14 368 313 156 35 chr3 39601560 39601931 -187922647 + L2 LINE L2 2855 3270 -2 26 0 0 0 chr3 39602129 39602155 -187922423 + AT_rich Low_complexity Low_complexity 1 26 0 206 135 0 27 chr3 39602156 39602193 -187922385 + (GAGAA)n Simple_repeat Simple_repeat 5 40 0 1783 171 0 11 chr3 39602200 39602487 -187922091 - AluJb SINE Alu -17 295 12 343 250 26 0 chr3 39602521 39602597 -187921981 + MER2 DNA MER2_type 267 344 -1 2106 115 11 0 chr3 39602649 39602962 -187921616 - AluSx SINE Alu 0 318 3 2030 135 51 38 chr3 39604135 39604505 -187920073 + THE1C LTR MaLR 1 375 0 1922 154 3 7 chr3 39604513 39604819 -187919759 - AluJb SINE Alu -7 305 1 452 139 0 0 chr3 39604983 39605055 -187919523 - LTR24B LTR ERV1 -7 569 498 * 894 230 90 50 chr3 39605024 39605424 -187919154 - LTR56 LTR ERV1 -21 424 9 710 182 7 27 chr3 39606006 39606154 -187918424 + MER31B LTR ERV1 1 145 -321 1557 181 0 29 chr3 39606155 39606436 -187918142 + AluJb SINE Alu 1 273 -39 1040 82 24 6 chr3 39606437 39606607 -187917971 + (GAAA)n Simple_repeat Simple_repeat 3 175 0 412 191 45 0 chr3 39606614 39606703 -187917875 + AluSg/x SINE Alu 215 307 -3 453 36 0 0 chr3 39606703 39606758 -187917820 + (GGAA)n Simple_repeat Simple_repeat 1 55 0 1353 167 110 17 chr3 39606759 39607058 -187917520 + MER31B LTR ERV1 140 466 0 628 210 68 139 chr3 39607172 39607344 -187917234 + MER110A LTR ERV1 168 308 -160 1210 167 196 54 chr3 39607344 39607787 -187916791 + LTR54 LTR ERV1 5 510 0 628 210 68 139 chr3 39607787 39607938 -187916640 + MER110A LTR ERV1 308 468 0 1257 164 89 115 chr3 39608006 39608468 -187916110 + LTR7 LTR ERV1 1 450 0 23906 172 18 21 chr3 39608468 39616313 -187908265 + HERVH LTR ERV1 1 7713 0 1419 161 106 69 chr3 39616313 39616625 -187907953 + LTR7 LTR ERV1 1 335 -115 2426 78 3 0 chr3 39616625 39616921 -187907657 + AluY SINE Alu 1 297 -14 1419 161 106 69 chr3 39616921 39617042 -187907536 + LTR7 LTR ERV1 335 450 0 4392 116 21 45 chr3 39617104 39617810 -187906768 - LTR8 LTR ERV1 -2 689 1 2055 198 128 48 chr3 39617854 39618525 -187906053 + MER50 LTR ERV1 10 734 0 325 326 138 16 chr3 39619143 39619201 -187905377 - L1ME4a LINE L1 -1 6120 6070 2098 161 93 65 chr3 39619201 39619697 -187904881 - LTR54 LTR ERV1 0 510 1 325 326 138 16 chr3 39619697 39619942 -187904636 - L1ME4a LINE L1 -51 6070 5780 33 0 0 0 chr3 39619968 39620001 -187904577 + AT_rich Low_complexity Low_complexity 1 33 0 2344 58 31 0 chr3 39620077 39620369 -187904209 - AluY SINE Alu -10 301 1 232 352 57 39 chr3 39620396 39620677 -187903901 - L1ME4a LINE L1 -540 5581 5296 1317 233 74 45 chr3 39620679 39621165 -187903413 - LTR24B LTR ERV1 -7 569 70 1873 154 38 7 chr3 39621297 39621589 -187902989 - AluJb SINE Alu -11 301 1 2125 133 39 33 chr3 39621884 39622246 -187902332 - THE1B LTR MaLR 0 364 1 867 222 0 14 chr3 39622484 39622700 -187901878 + L1MA4 LINE L1 6084 6296 -4 289 271 126 62 chr3 39622849 39623270 -187901308 + HAL1 LINE L1 1008 1455 -1052 2167 154 55 3 chr3 39623302 39623685 -187900893 - MER57A LTR ERV1 0 403 1 729 275 81 14 chr3 39623756 39624145 -187900433 - MLT1J LTR MaLR -52 459 1 374 302 122 9 chr3 39624148 39624492 -187900086 + HAL1 LINE L1 1483 1946 -561 2392 97 0 3 chr3 39624706 39625016 -187899562 - AluSc SINE Alu 0 309 1 973 286 33 31 chr3 39625198 39625449 -187899129 + L1MC4a LINE L1 5392 5641 -2167 2292 94 82 15 chr3 39625449 39625790 -187898788 - THE1B LTR MaLR 0 364 1 973 286 33 31 chr3 39625790 39625804 -187898774 + L1MC4a LINE L1 5641 5653 -2155 4045 126 47 83 chr3 39625804 39626619 -187897959 - LTR1 LTR ERV1 0 785 1 973 286 33 31 chr3 39626619 39626712 -187897866 + L1MC4a LINE L1 5653 5752 -2056 1357 199 62 33 chr3 39626749 39627085 -187897493 - MLT1A1 LTR MaLR -19 346 1 261 217 116 0 chr3 39627092 39627161 -187897417 + L1MC4a LINE L1 5830 5906 -1902 2971 72 43 65 chr3 39627244 39627687 -187896891 - LTR3b LTR ERVK -4 433 1 1404 157 0 10 chr3 39627725 39627980 -187896598 - HERVK3 LTR ERVK -373 5572 5130 * 5507 179 2 5 chr3 39627966 39629178 -187895400 - HERVK3 LTR ERVK -4104 3139 1859 542 162 10 30 chr3 39629170 39629269 -187895309 - HERVK3 LTR ERVK -5826 1417 1321 * 898 197 50 20 chr3 39629257 39629455 -187895123 - HERVK3 LTR ERVK -6563 680 477 772 136 11 24 chr3 39629452 39629640 -187894938 - HERVK3 LTR ERVK -6971 272 51 * 2794 94 102 0 chr3 39629749 39630142 -187894436 - LTR3b LTR ERVK -4 433 1 339 184 69 23 chr3 39630152 39630239 -187894339 + MLT1I LTR MaLR 90 180 -229 766 294 102 10 chr3 39630251 39630544 -187894034 + MLT1I LTR MaLR 90 409 0 249 196 223 76 chr3 39630547 39630594 -187893984 + L1MC4a LINE L1 5905 5944 -1864 3549 111 0 34 chr3 39630594 39630622 -187893956 - MER75 DNA T2_type 0 514 487 2001 151 3 3 chr3 39630622 39630934 -187893644 + AluSx SINE Alu 1 312 0 3549 111 0 34 chr3 39630934 39631436 -187893142 - MER75 DNA T2_type -27 487 2 249 196 223 76 chr3 39631436 39631612 -187892966 + L1MC4a LINE L1 5944 6161 -1647 415 168 192 8 chr3 39631624 39631749 -187892829 + HAL1 LINE L1 2294 2441 -66 219 270 68 101 chr3 39632361 39632448 -187892130 + L2 LINE L2 2616 2704 -610 2267 61 4 7 chr3 39632448 39632747 -187891831 - AluY SINE Alu 0 300 3 219 270 68 101 chr3 39632747 39632895 -187891683 + L2 LINE L2 2704 2844 -470 2438 90 3 0 chr3 39632902 39633246 -187891332 - AluSp SINE Alu 0 345 1 405 0 0 0 chr3 39633294 39633339 -187891239 + (TCTA)n Simple_repeat Simple_repeat 2 46 0 1694 153 33 0 chr3 39633339 39633613 -187890965 - AluJb SINE Alu -29 283 1 526 255 127 86 chr3 39633664 39634025 -187890553 + L2 LINE L2 2897 3272 0 2144 123 0 3 chr3 39634053 39634355 -187890223 + AluSx SINE Alu 1 301 -11 1751 184 3 19 chr3 39635296 39635611 -187888967 + AluJb SINE Alu 1 310 -2 225 132 0 0 chr3 39635810 39635848 -187888730 + (TAAAA)n Simple_repeat Simple_repeat 4 41 0 902 220 94 4 chr3 39636019 39636431 -187888147 - L1MC4 LINE L1 -469 7419 6956 399 292 95 6 chr3 39636448 39636706 -187887872 + L2 LINE L2 2786 3070 -243 1109 97 7 0 chr3 39636720 39636864 -187887714 + AluSg SINE Alu 1 145 -165 22059 100 27 22 chr3 39636964 39637327 -187887251 - MER57-int LTR ERV1 -1267 4679 4319 2340 106 0 3 chr3 39637327 39637630 -187886948 + AluSg SINE Alu 2 303 -7 22059 100 27 22 chr3 39637630 39638161 -187886417 - MER57-int LTR ERV1 -1627 4319 3792 2063 120 33 13 chr3 39638161 39638460 -187886118 - AluSx SINE Alu -2 310 6 22059 100 27 22 chr3 39638460 39639177 -187885401 - MER57-int LTR ERV1 -2154 3792 3080 4770 72 5 3 chr3 39639177 39639798 -187884780 - L1PA8 LINE L1 -3 6169 5548 22059 100 27 22 chr3 39639798 39639887 -187884691 - MER57-int LTR ERV1 -2866 3080 2993 1837 171 7 3 chr3 39639887 39640191 -187884387 - AluJb SINE Alu -7 305 1 22059 100 27 22 chr3 39640191 39641197 -187883381 - MER57-int LTR ERV1 -2953 2993 1949 2368 91 7 0 chr3 39641197 39641495 -187883083 + AluSp SINE Alu 1 300 -13 22059 100 27 22 chr3 39641495 39642094 -187882484 - MER57-int LTR ERV1 -3997 1949 1354 811 101 34 0 chr3 39642100 39642219 -187882359 - MER57-int LTR ERV1 -5710 1827 1705 * 4354 120 22 13 chr3 39642207 39642841 -187881737 - MER57-int LTR ERV1 -5306 640 1 240 228 51 0 chr3 39643031 39643110 -187881468 - L1MDa LINE L1 -4940 1189 1107 380 234 36 36 chr3 39643168 39643305 -187881273 - L1MDa LINE L1 -5088 1031 895 1490 159 35 12 chr3 39643413 39643670 -187880908 + AluJo SINE Alu 14 276 -36 909 140 13 25 chr3 39643805 39643962 -187880616 - AluJb SINE Alu -14 298 144 7581 60 0 12 chr3 39644186 39645741 -187878837 - SVA Other Other -799 1381 1 267 156 148 133 chr3 39647723 39647851 -187876727 - MER5A DNA MER1_type -51 138 9 475 256 0 16 chr3 39649037 39649158 -187875420 + L2 LINE L2 3150 3268 -4 336 259 119 70 chr3 39649338 39649539 -187875039 + MLT1L LTR MaLR 170 380 -235 352 213 38 0 chr3 39649767 39649847 -187874731 - MIR SINE MIR -67 195 113 2556 72 0 3 chr3 39650023 39650330 -187874248 + AluY SINE Alu 1 306 -5 1857 147 11 0 chr3 39650434 39650707 -187873871 + AluSx SINE Alu 1 276 -36 542 145 43 43 chr3 39650744 39650840 -187873738 + MLT1B LTR MaLR 4 102 -288 2506 15 0 0 chr3 39650840 39651111 -187873467 + AluYb8 SINE Alu 34 304 -14 542 145 43 43 chr3 39651111 39651131 -187873447 + MLT1B LTR MaLR 101 120 -270 387 305 13 26 chr3 39651282 39651436 -187873142 - MIR3 SINE MIR -16 192 41 769 133 17 31 chr3 39652828 39653244 -187871334 + (TCCA)n Simple_repeat Simple_repeat 1 410 0 249 33 0 0 chr3 39653295 39653325 -187871253 + (CATCC)n Simple_repeat Simple_repeat 1 30 0 2250 105 24 0 chr3 39653609 39653903 -187870675 - AluSg SINE Alu -9 301 1 2329 153 23 0 chr3 39653903 39654289 -187870289 + L1MB3 LINE L1 5788 6182 -1 363 171 37 0 chr3 39654533 39654615 -187869963 - MLT1J LTR MaLR 0 555 471 874 203 76 10 chr3 39654625 39654822 -187869756 - MLT1G1 LTR MaLR -379 216 7 317 256 29 58 chr3 39655191 39655328 -187869250 + MER5B DNA MER1_type 1 133 -45 253 239 14 0 chr3 39655507 39655578 -187869000 - MIR3 SINE MIR -11 197 126 478 216 17 35 chr3 39655578 39655694 -187868884 - MER81 DNA DNA 0 114 1 4445 171 22 6 chr3 39655697 39657055 -187867523 - L1MB7 LINE L1 -149 6035 4658 1972 154 58 3 chr3 39657171 39657514 -187867064 - MER57A LTR ERV1 -41 362 1 729 275 81 14 chr3 39657585 39657974 -187866604 - MLT1J LTR MaLR -52 459 1 374 300 121 9 chr3 39657977 39658321 -187866257 + HAL1 LINE L1 1483 1946 -561 2263 120 0 13 chr3 39658535 39658851 -187865727 - AluSx SINE Alu 0 312 1 957 142 8 0 chr3 39658851 39658985 -187865593 - AluJo SINE Alu -177 135 1 704 191 0 60 chr3 39658987 39659155 -187865423 - L1MC4 LINE L1 -407 7635 7478 421 210 0 0 chr3 39659157 39659238 -187865340 + AluJ/FLAM SINE Alu 2 82 -230 901 173 33 107 chr3 39659337 39659609 -187864969 - AluJo SINE Alu -18 294 43 2371 89 25 30 chr3 39660107 39660130 -187864448 + L1PA16 LINE L1 5808 5830 -336 2344 101 0 0 chr3 39660130 39660427 -187864151 + AluSc SINE Alu 1 297 -12 2371 89 25 30 chr3 39660427 39660764 -187863814 + L1PA16 LINE L1 5830 6166 0 355 172 31 0 chr3 39661125 39661201 -187863377 + AluSp SINE Alu 147 211 -92 792 222 59 37 chr3 39661324 39661594 -187862984 + L1ME1 LINE L1 5876 6151 -15 2179 117 0 3 chr3 39661594 39661892 -187862686 - AluSx SINE Alu -15 297 1 1786 182 3 3 chr3 39662197 39662493 -187862085 + AluJo SINE Alu 1 296 -16 271 264 55 36 chr3 39662574 39662684 -187861894 + HAL1b LINE L1 1203 1314 -34 264 349 75 7 chr3 39662859 39663005 -187861573 + MIR3 SINE MIR 21 176 -32 303 164 18 0 chr3 39664238 39664293 -187860285 + L1ME3A LINE L1 5879 5934 -236 878 136 0 0 chr3 39665078 39665210 -187859368 - FLAM_C SINE Alu -1 132 1 2251 254 22 7 chr3 39666020 39666576 -187858002 - L1ME3A LINE L1 -10 6160 5597 732 188 158 6 chr3 39666722 39666887 -187857691 + MER58A DNA MER1_type 32 221 -3 802 73 18 9 chr3 39667198 39667307 -187857271 + AluY SINE Alu 184 293 -18 329 229 57 9 chr3 39668794 39668899 -187855679 + MIR3 SINE MIR 84 193 -15 206 323 77 19 chr3 39669345 39669500 -187855078 - MIR SINE MIR -97 165 2 1846 134 8 4 chr3 39669640 39669908 -187854670 + AluJb SINE Alu 26 294 -18 424 193 67 44 chr3 39669961 39670096 -187854482 - MIR SINE MIR -42 220 83 231 268 120 42 chr3 39670110 39670252 -187854326 + L3 LINE CR1 1321 1473 -104 829 216 35 30 chr3 39671189 39671388 -187853190 + MER3 DNA MER1_type 2 201 -8 229 204 20 0 chr3 39671396 39671445 -187853133 + MER91 DNA MER1_type 141 190 0 2323 107 0 7 chr3 39672522 39672831 -187851747 + AluSc SINE Alu 1 307 -2 373 203 47 62 chr3 39672875 39673003 -187851575 + L1MC5 LINE L1 7770 7895 -66 1377 147 14 0 chr3 39673573 39673784 -187850794 - AluSx SINE Alu -13 297 84 1152 144 0 28 chr3 39673890 39674071 -187850507 + AluJo SINE Alu 1 176 -136 535 141 0 0 chr3 39674071 39674149 -187850429 - AluSx SINE Alu -233 79 2 892 229 77 72 chr3 39674687 39675062 -187849516 + MSTD LTR MaLR 17 393 -3 373 167 125 83 chr3 39675062 39675177 -187849401 + MLT1J LTR MaLR 338 461 -50 1384 137 40 0 chr3 39675177 39675404 -187849174 + MER46A DNA MER2_type 1 236 0 373 167 125 83 chr3 39675404 39675425 -187849153 + MLT1J LTR MaLR 461 480 -31 1855 157 4 0 chr3 39675626 39675933 -187848645 + AluJb SINE Alu 1 308 0 231 324 14 0 chr3 39676180 39676251 -187848327 + L2 LINE L2 3242 3313 0 328 307 66 6 chr3 39676449 39676615 -187847963 - L1MC4 LINE L1 -241 7801 7626 316 128 0 0 chr3 39676616 39676663 -187847915 - Alu SINE Alu -7 295 249 229 224 15 45 chr3 39676769 39676836 -187847742 + MIR SINE MIR 120 184 -78 769 273 123 46 chr3 39676900 39677314 -187847264 + MLT1J1 LTR MaLR 1 446 0 259 163 38 62 chr3 39677337 39677417 -187847161 + U13 snRNA snRNA 1 78 -26 2420 98 0 0 chr3 39677695 39677992 -187846586 - AluSg SINE Alu -13 297 1 385 246 41 35 chr3 39678475 39678646 -187845932 - L1MC4a LINE L1 -1797 6011 5840 201 270 5 92 chr3 39678715 39678911 -187845667 + CT-rich Low_complexity Low_complexity 1 179 0 * 307 408 0 0 chr3 39678768 39678915 -187845663 + C-rich Low_complexity Low_complexity 1 147 0 2290 107 10 3 chr3 39679309 39679608 -187844970 - AluSx SINE Alu -11 301 1 349 217 101 0 chr3 39680006 39680075 -187844503 - MER58A DNA MER1_type -30 77 2 720 168 99 0 chr3 39680187 39680318 -187844260 - MER21B LTR ERV1 -399 464 321 522 225 33 17 chr3 39680692 39680812 -187843766 + MER69A DNA AcHobo 14 135 -42 227 237 118 0 chr3 39680833 39680925 -187843653 + MIR SINE MIR 28 140 -68 201 283 0 0 chr3 39681460 39681506 -187843072 - L2 LINE L2 -3 3310 3265 278 303 108 10 chr3 39681515 39681710 -187842868 - L2 LINE L2 -211 3061 2848 196 227 0 0 chr3 39681746 39681790 -187842788 - MIR SINE MIR -7 255 212 553 231 56 7 chr3 39682178 39682321 -187842257 + MLT1H LTR MaLR 35 184 -365 979 266 44 49 chr3 39682445 39682993 -187841585 - L1ME3 LINE L1 -334 5828 5284 25 83 0 0 chr3 39683025 39683085 -187841493 + AT_rich Low_complexity Low_complexity 1 60 0 1956 143 117 8 chr3 39683172 39683557 -187841021 - L1MB8 LINE L1 0 6178 5752 275 193 125 11 chr3 39683811 39683899 -187840679 + MER5A DNA MER1_type 15 112 -77 296 305 39 26 chr3 39683968 39684122 -187840456 - MER5B DNA MER1_type -6 172 17 204 125 0 0 chr3 39686061 39686093 -187838485 + (TG)n Simple_repeat Simple_repeat 2 33 0 227 204 20 0 chr3 39686093 39686142 -187838436 + GA-rich Low_complexity Low_complexity 2 51 0 2225 124 0 9 chr3 39686230 39686583 -187837995 - AluSx SINE Alu 0 350 1 247 269 76 8 chr3 39686821 39686940 -187837638 - L1ME4a LINE L1 -178 5943 5817 2296 108 13 0 chr3 39687915 39688222 -187836356 + AluSx SINE Alu 1 311 -1 2339 156 31 11 chr3 39688263 39688736 -187835842 + L1M3 LINE L1 5200 5679 -504 21 0 0 0 chr3 39689051 39689072 -187835506 + AT_rich Low_complexity Low_complexity 1 21 0 215 256 106 16 chr3 39689437 39689567 -187835011 + MIR3 SINE MIR 15 150 -61 976 269 63 36 chr3 39691145 39691509 -187833069 + LTR33 LTR ERVL 23 396 -125 181 221 265 0 chr3 39691628 39691696 -187832882 + MIR SINE MIR 176 261 -1 1331 272 116 15 chr3 39691781 39692240 -187832338 + MLT1J LTR MaLR 3 507 -4 438 276 79 47 chr3 39692374 39692628 -187831950 + MLT1J LTR MaLR 1 262 -249 323 320 49 16 chr3 39692941 39693063 -187831515 + MLT1K LTR MaLR 24 149 -439 370 264 41 102 chr3 39693178 39693439 -187831139 + MLT1K LTR MaLR 322 545 -43 2222 121 3 10 chr3 39693710 39694024 -187830554 + AluSx SINE Alu 1 312 0 373 233 40 0 chr3 39694386 39694496 -187830082 + MIR SINE MIR 43 160 -66 1767 174 3 7 chr3 39694677 39694975 -187829603 + AluJo SINE Alu 1 297 -15 245 157 20 39 chr3 39695903 39695954 -187828624 - L1ME4a LINE L1 -104 6017 5968 24 85 0 0 chr3 39695972 39696031 -187828547 + AT_rich Low_complexity Low_complexity 1 59 0 780 209 45 6 chr3 39696684 39696861 -187827717 + MER5A DNA MER1_type 4 187 -2 248 204 0 0 chr3 39697157 39697201 -187827377 - L2 LINE L2 -40 3273 3230 4196 163 101 16 chr3 39697238 39698220 -187826358 + L1MB7 LINE L1 5122 6184 0 2152 112 0 37 chr3 39698410 39698732 -187825846 - AluSx SINE Alu -2 310 1 326 71 0 0 chr3 39698732 39698774 -187825804 - Alu SINE Alu -260 42 1 493 182 91 0 chr3 39699095 39699194 -187825384 + L1MA8 LINE L1 5971 6078 -213 437 239 28 102 chr3 39699887 39700063 -187824515 + MIR SINE MIR 79 241 -21 298 282 105 16 chr3 39700096 39700220 -187824358 + L2 LINE L2 3134 3268 -4 1769 162 54 0 chr3 39700728 39701043 -187823535 + MLT1B LTR MaLR 57 388 -2 801 187 47 6 chr3 39702531 39702702 -187821876 + MER5B DNA MER1_type 1 178 0 982 169 0 0 chr3 39703227 39703416 -187821162 - AluJb SINE Alu 0 323 135 358 357 26 7 chr3 39703622 39703776 -187820802 - L2 LINE L2 0 3272 3116 282 264 55 27 chr3 39704086 39704196 -187820382 + MLT1H LTR MaLR 437 549 0 1755 141 28 17 chr3 39704529 39704819 -187819759 - AluJo SINE Alu -19 293 1 2228 86 0 7 chr3 39705098 39705378 -187819200 + AluSc SINE Alu 1 278 -31 213 39 0 0 chr3 39705381 39705407 -187819171 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 643 157 0 26 chr3 39705610 39705763 -187818815 + (TCTA)n Simple_repeat Simple_repeat 2 150 0 278 250 31 0 chr3 39705846 39705910 -187818668 + MIR3 SINE MIR 120 185 -23 830 242 171 10 chr3 39705921 39706214 -187818364 - MER113 DNA MER1_type? 0 521 182 1643 197 10 0 chr3 39706257 39706561 -187818017 + AluJo SINE Alu 1 307 -5 205 250 73 0 chr3 39706803 39706871 -187817707 - MIR SINE MIR -115 93 21 412 284 45 27 chr3 39707008 39707206 -187817372 - MIR SINE MIR -60 202 3 402 260 47 16 chr3 39707222 39707349 -187817229 - L2 LINE L2 -2 3311 3181 2104 119 0 0 chr3 39707391 39707677 -187816901 + AluSg SINE Alu 2 287 -23 304 275 0 22 chr3 39707677 39707768 -187816810 + L1MC4 LINE L1 6615 6703 -1339 * 318 264 23 0 chr3 39707756 39707843 -187816735 + L1MC4 LINE L1 6614 6702 -1340 459 196 0 0 chr3 39707846 39708019 -187816559 + (TA)n Simple_repeat Simple_repeat 1 173 0 303 288 29 35 chr3 39708183 39708353 -187816225 + GA-rich Low_complexity Low_complexity 5 173 0 220 338 0 0 chr3 39708356 39708433 -187816145 - MIR SINE MIR -6 256 180 2624 153 75 42 chr3 39708646 39709111 -187815467 + LTR24B LTR ERV1 3 491 -85 2140 98 18 0 chr3 39709111 39709416 -187815162 - AluSc SINE Alu 0 310 1 2624 153 75 42 chr3 39709416 39709498 -187815080 + LTR24B LTR ERV1 491 569 -7 366 176 15 0 chr3 39709740 39709808 -187814770 - L1ME4a LINE L1 -81 6040 5972 288 267 122 8 chr3 39710039 39710129 -187814449 + L1ME4a LINE L1 5849 5960 -161 4443 137 5 37 chr3 39710129 39710883 -187813695 + L1MB2 LINE L1 5442 6171 0 288 267 122 8 chr3 39710883 39710923 -187813655 + L1ME4a LINE L1 5960 5994 -127 452 206 178 20 chr3 39710959 39711105 -187813473 + MER5A DNA MER1_type 12 180 -9 201 195 0 0 chr3 39711104 39711145 -187813433 + L2 LINE L2 3273 3313 0 * 456 266 101 19 chr3 39712176 39712385 -187812193 + L1MC4a LINE L1 5683 5858 -305 376 248 95 7 chr3 39712496 39712633 -187811945 + MIR SINE MIR 65 213 -49 440 292 0 0 chr3 39712876 39712996 -187811582 - MER117 DNA MER1_type -73 124 5 235 284 165 0 chr3 39713062 39713171 -187811407 + MER94 DNA DNA 4 130 -4 2419 70 3 16 chr3 39713371 39713684 -187810894 + AluSc SINE Alu 1 309 0 5959 77 38 30 chr3 39714004 39714824 -187809754 + LTR12 LTR ERV1 1 826 0 3855 131 23 10 chr3 39715248 39715853 -187808725 - MER41B LTR ERV1 -22 613 1 2196 101 17 0 chr3 39715936 39716232 -187808346 + AluSq SINE Alu 1 301 -12 3807 118 31 54 chr3 39716412 39716578 -187808000 + MER41B LTR ERV1 1 169 -466 2604 58 0 10 chr3 39716578 39716887 -187807691 + AluY SINE Alu 1 306 -5 3807 118 31 54 chr3 39716887 39717267 -187807311 + MER41B LTR ERV1 169 532 -103 1509 164 95 0 chr3 39717267 39717541 -187807037 + AluJb SINE Alu 1 300 -12 3807 118 31 54 chr3 39717541 39717643 -187806935 + MER41B LTR ERV1 532 635 0 524 194 104 0 chr3 39717662 39717796 -187806782 + MIR SINE MIR 59 206 -56 650 238 68 0 chr3 39718297 39718444 -187806134 - FRAM SINE Alu -9 157 1 601 143 61 0 chr3 39718567 39718665 -187805913 - HY1 scRNA scRNA -3 109 6 2321 92 7 3 chr3 39719778 39720083 -187804495 - AluSp SINE Alu -7 306 1 55 16 0 0 chr3 39720119 39720181 -187804397 + AT_rich Low_complexity Low_complexity 1 62 0 2264 78 10 86 chr3 39720435 39720818 -187803760 - L1PA16 LINE L1 -9 6157 5804 3956 104 116 34 chr3 39720903 39721992 -187802586 + MER11A LTR ERVK 1 1232 -4 211 407 34 0 chr3 39722029 39722147 -187802431 - L2 LINE L2 -188 3084 2963 1676 238 51 16 chr3 39722147 39722579 -187801999 - MLT1G LTR MaLR 0 590 144 2145 128 6 6 chr3 39722583 39722895 -187801683 + AluSx SINE Alu 1 312 0 228 131 0 131 chr3 39722959 39723020 -187801558 - MLT1G LTR MaLR -415 134 82 1815 165 0 3 chr3 39723698 39723989 -187800589 - AluJo SINE Alu -22 290 1 566 185 0 0 chr3 39724033 39724125 -187800453 - AluSc SINE Alu -95 214 123 2189 115 0 0 chr3 39724130 39724418 -187800160 - AluSx SINE Alu -24 288 1 397 146 31 73 chr3 39724419 39724515 -187800063 - L1M4 LINE L1 -506 5668 5577 251 268 202 35 chr3 39724557 39724698 -187799880 - L1M4 LINE L1 -2347 3799 3636 2232 104 0 13 chr3 39724870 39725168 -187799410 - AluSg SINE Alu -16 294 1 186 118 0 0 chr3 39725180 39725214 -187799364 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 2107 120 0 10 chr3 39725214 39725496 -187799082 - AluSg SINE Alu -25 285 5 1118 228 20 63 chr3 39725692 39725921 -187798657 - L1MB8 LINE L1 -10 6168 5958 1890 161 17 3 chr3 39725921 39726219 -187798359 + AluSx SINE Alu 1 302 -10 1118 228 20 63 chr3 39726219 39726340 -187798238 - L1MB8 LINE L1 -220 5958 5833 359 329 27 13 chr3 39726391 39726540 -187798038 - L1MEc LINE L1 -5908 488 338 831 136 0 8 chr3 39727050 39727175 -187797403 - FLAM_C SINE Alu -9 124 1 1145 121 6 12 chr3 39727693 39727866 -187796712 - FRAM SINE Alu -4 172 1 1676 181 3 3 chr3 39728195 39728483 -187796095 + AluJo SINE Alu 1 288 -24 1423 145 16 8 chr3 39728512 39728754 -187795824 + L1MB3 LINE L1 5925 6168 -15 2137 141 0 0 chr3 39728957 39729262 -187795316 - AluSq SINE Alu -8 305 1 1837 156 0 26 chr3 39730083 39730282 -187794296 - AluJo SINE Alu -12 300 110 1941 156 24 19 chr3 39730282 39730653 -187793925 + THE1C LTR MaLR 1 373 -2 1837 156 0 26 chr3 39730653 39730761 -187793817 - AluJo SINE Alu -202 110 1 225 216 0 0 chr3 39731096 39731147 -187793431 - L2 LINE L2 0 3313 3263 2021 126 30 7 chr3 39732082 39732106 -187792472 - AluSx SINE Alu -3 309 287 186 43 0 0 chr3 39732106 39732129 -187792449 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 2021 126 30 7 chr3 39732129 39732406 -187792172 - AluSx SINE Alu -25 287 1 801 186 0 0 chr3 39732421 39732539 -187792039 - FLAM_C SINE Alu -25 118 1 1205 202 6 10 chr3 39733099 39733411 -187791167 + AluY SINE Alu 1 311 0 5959 77 38 30 chr3 39733733 39734553 -187790025 + LTR12 LTR ERV1 1 826 0 844 232 35 89 chr3 39734859 39735033 -187789545 + MLT1H LTR MaLR 200 345 -204 1888 170 13 3 chr3 39735033 39735333 -187789245 + AluJb SINE Alu 1 303 -9 844 232 35 89 chr3 39735333 39735528 -187789050 + MLT1H LTR MaLR 345 549 0 316 329 91 57 chr3 39735678 39736085 -187788493 + L3 LINE CR1 1133 1553 -24 305 267 155 25 chr3 39736211 39736372 -187788206 + MIR SINE MIR 23 204 -58 1918 147 0 10 chr3 39736543 39736835 -187787743 - AluJo SINE Alu -23 289 1 724 189 8 23 chr3 39736860 39736992 -187787586 - FLAM_C SINE Alu -3 130 1 203 157 0 59 chr3 39737528 39737579 -187786999 + CT-rich Low_complexity Low_complexity 5 52 0 243 321 179 13 chr3 39737643 39737867 -187786711 - MIR SINE MIR 0 262 2 1987 158 3 0 chr3 39738022 39738332 -187786246 + AluSx SINE Alu 1 311 -1 190 261 0 0 chr3 39738918 39738964 -187785614 - MER5A DNA MER1_type -141 48 3 2480 80 0 3 chr3 39738970 39739282 -187785296 + AluY SINE Alu 1 311 0 2416 86 0 0 chr3 39740039 39740342 -187784236 + AluY SINE Alu 1 303 -8 1831 144 39 20 chr3 39740645 39740950 -187783628 - AluY SINE Alu 0 311 1 779 117 117 0 chr3 39740950 39741070 -187783508 - AluJb SINE Alu -177 135 2 724 133 0 62 chr3 39741124 39741252 -187783326 + AluSg/x SINE Alu 129 248 -64 25 31 0 0 chr3 39742597 39742629 -187781949 + GC_rich Low_complexity Low_complexity 1 32 0 1781 156 6 22 chr3 39743194 39743508 -187781070 + AluJb SINE Alu 1 309 -3 199 139 70 0 chr3 39743684 39743727 -187780851 - L2 LINE L2 -18 3254 3209 586 177 40 0 chr3 39743753 39743877 -187780701 + MER5B DNA MER1_type 1 129 -49 254 79 53 0 chr3 39743892 39743930 -187780648 - Alu SINE Alu -14 286 247 204 196 18 18 chr3 39743930 39743986 -187780592 + MER5B DNA MER1_type 120 175 -3 1897 119 50 4 chr3 39744056 39744333 -187780245 + AluSq SINE Alu 1 290 -23 2066 144 63 47 chr3 39744667 39744837 -187779741 - LTR39 LTR ERV1 0 783 617 1571 164 89 7 chr3 39744837 39745117 -187779461 + AluJo SINE Alu 1 303 -9 2066 144 63 47 chr3 39745117 39745329 -187779249 - LTR39 LTR ERV1 -166 617 395 1330 181 0 9 chr3 39745329 39745556 -187779022 + AluJb SINE Alu 86 310 -2 2318 128 63 16 chr3 39745556 39745776 -187778802 - LTR39 LTR ERV1 -376 407 160 2056 134 23 0 chr3 39745776 39746081 -187778497 - AluJb SINE Alu 0 312 1 2318 128 63 16 chr3 39746081 39746242 -187778336 - LTR39 LTR ERV1 -623 160 8 827 178 0 0 chr3 39746327 39746456 -187778122 - FLAM_C SINE Alu -14 129 1 1969 89 203 12 chr3 39746596 39747009 -187777569 - LTR14B LTR ERVK 0 608 1 342 256 16 8 chr3 39747135 39747256 -187777322 + L1ME3A LINE L1 5835 5956 -214 1194 78 176 54 chr3 39747661 39747866 -187776712 + MER30 DNA MER1_type 1 230 0 336 285 72 47 chr3 39747960 39748153 -187776425 - MLT1G1-int LTR MaLR -882 489 292 276 294 71 0 chr3 39748195 39748280 -187776298 - MLT1G1-int LTR MaLR -1280 91 1 776 243 81 103 chr3 39748299 39748763 -187775815 - MLT1G1 LTR MaLR 0 530 3 203 258 86 32 chr3 39748776 39748869 -187775709 - MIR SINE MIR -108 154 57 833 308 35 90 chr3 39748899 39748982 -187775596 - L2 LINE L2 -1 3271 3185 1596 149 28 25 chr3 39748982 39749264 -187775314 + AluSx SINE Alu 1 283 -29 833 308 35 90 chr3 39749264 39750214 -187774364 - L2 LINE L2 -87 3185 2274 325 127 73 0 chr3 39750265 39750320 -187774258 + L2 LINE L2 3250 3308 -5 744 145 23 30 chr3 39750521 39750652 -187773926 + FLAM_C SINE Alu 1 130 -3 2257 62 55 0 chr3 39750678 39750967 -187773611 - AluY SINE Alu -6 305 1 675 301 6 0 chr3 39751012 39751188 -187773390 + MER91B DNA MER1_type 14 190 0 1345 150 109 92 chr3 39751312 39751377 -187773201 - MLT1A1 LTR MaLR 0 365 303 1983 154 7 0 chr3 39751377 39751682 -187772896 - AluSx SINE Alu -5 307 1 1345 150 109 92 chr3 39751682 39751845 -187772733 - MLT1A1 LTR MaLR -62 303 126 1526 190 38 10 chr3 39751845 39752134 -187772444 + AluJo SINE Alu 1 297 -15 1345 150 109 92 chr3 39752134 39752263 -187772315 - MLT1A1 LTR MaLR -239 126 1 801 186 0 0 chr3 39752729 39752847 -187771731 + FLAM_C SINE Alu 1 118 -25 2021 126 30 7 chr3 39752862 39753139 -187771439 + AluSx SINE Alu 1 287 -25 186 43 0 0 chr3 39753139 39753162 -187771416 + (TTAA)n Simple_repeat Simple_repeat 1 23 0 2021 126 30 7 chr3 39753162 39753186 -187771392 + AluSx SINE Alu 287 309 -3 225 216 0 0 chr3 39754120 39754171 -187770407 + L2 LINE L2 3263 3313 0 1837 156 0 26 chr3 39754506 39754614 -187769964 + AluJo SINE Alu 1 110 -202 1941 156 24 19 chr3 39754614 39754985 -187769593 - THE1C LTR MaLR -2 373 1 1837 156 0 26 chr3 39754985 39755184 -187769394 + AluJo SINE Alu 110 300 -12 1964 151 0 0 chr3 39756006 39756352 -187768226 + AluSq SINE Alu 1 346 0 525 255 28 0 chr3 39756353 39756498 -187768080 - L1M4 LINE L1 -843 5303 5155 1685 183 0 29 chr3 39756499 39756805 -187767773 - AluJo SINE Alu -15 297 1 1937 169 36 22 chr3 39756858 39757220 -187767358 + MLT1D LTR MaLR 139 505 0 462 240 8 8 chr3 39757228 39757349 -187767229 - L1M4 LINE L1 -1260 4886 4766 2111 109 46 0 chr3 39757356 39757641 -187766937 - AluSx SINE Alu -13 299 2 1216 251 49 2 chr3 39757807 39758218 -187766360 + L1MC/D LINE L1 4181 4610 -1536 641 167 0 0 chr3 39758258 39758354 -187766224 - AluS SINE Alu -215 97 2 420 254 48 39 chr3 39758884 39759068 -187765510 + L1MC/D LINE L1 5553 5737 -532 528 237 164 0 chr3 39759349 39759526 -187765052 + MIR SINE MIR 17 222 -40 1702 182 0 3 chr3 39759534 39759831 -187764747 + AluJo SINE Alu 1 296 -16 27 0 0 0 chr3 39760687 39760714 -187763864 + AT_rich Low_complexity Low_complexity 1 27 0 1621 134 49 65 chr3 39761061 39761213 -187763365 - MER50 LTR ERV1 0 734 588 730 33 0 0 chr3 39761213 39761303 -187763275 + L1PA4 LINE L1 6063 6152 -3 1621 134 49 65 chr3 39761303 39761457 -187763121 - MER50 LTR ERV1 -146 588 433 1041 143 30 0 chr3 39761459 39761627 -187762951 - MER50 LTR ERV1 -500 234 62 558 0 0 0 chr3 39761627 39761689 -187762889 + (TG)n Simple_repeat Simple_repeat 2 63 0 288 65 109 22 chr3 39761742 39761788 -187762790 - MSTC LTR MaLR -372 56 7 206 162 27 0 chr3 39762047 39762084 -187762494 + (TATG)n Simple_repeat Simple_repeat 2 39 0 227 328 62 8 chr3 39762143 39762271 -187762307 - L2 LINE L2 -809 2505 2371 691 199 115 0 chr3 39762825 39762981 -187761597 + FAM SINE Alu 2 175 0 2092 62 0 0 chr3 39763329 39763587 -187760991 + L1PA7 LINE L1 5897 6154 0 1550 183 32 11 chr3 39764185 39764469 -187760109 + AluJo SINE Alu 1 290 -22 814 73 15 0 chr3 39764469 39764605 -187759973 + (TCTA)n Simple_repeat Simple_repeat 4 141 0 5659 214 61 37 chr3 39764761 39765843 -187758735 + L1MB8 LINE L1 3249 4304 -1842 2097 101 59 0 chr3 39765843 39766130 -187758448 + AluSq SINE Alu 1 304 -9 5659 214 61 37 chr3 39766130 39766563 -187758015 + L1MB8 LINE L1 4304 4808 -1338 1157 182 81 69 chr3 39766563 39766898 -187757680 + MER44D DNA MER2_type 1 609 0 5659 214 61 37 chr3 39766898 39767006 -187757572 + L1MB8 LINE L1 4808 4912 -1234 4494 156 38 19 chr3 39767006 39767111 -187757467 + LTR39 LTR ERV1 1 103 -680 2573 121 3 0 chr3 39767111 39767474 -187757104 - THE1B LTR MaLR 0 364 1 4494 156 38 19 chr3 39767474 39767829 -187756749 + LTR39 LTR ERV1 103 483 -300 1747 158 39 3 chr3 39767829 39768113 -187756465 - AluJb SINE Alu -18 294 1 4494 156 38 19 chr3 39768113 39768420 -187756158 + LTR39 LTR ERV1 483 783 0 270 86 0 0 chr3 39768420 39768455 -187756123 + L1MB8 LINE L1 4909 4943 -1203 1416 186 93 21 chr3 39768461 39768614 -187755964 + L1MB8 LINE L1 5124 5265 -913 1816 164 3 19 chr3 39768614 39768925 -187755653 - AluJo SINE Alu -6 306 1 1416 186 93 21 chr3 39768925 39769281 -187755297 + L1MB8 LINE L1 5265 5677 -501 379 301 80 40 chr3 39769283 39769383 -187755195 + MER92C LTR ERV1 6 117 -437 2028 166 10 42 chr3 39769383 39769786 -187754792 + MLT1B LTR MaLR 1 390 0 379 301 80 40 chr3 39769786 39769861 -187754717 + MER92C LTR ERV1 117 188 -366 346 254 0 0 chr3 39769924 39769995 -187754583 + MER92C LTR ERV1 484 554 0 1827 194 96 15 chr3 39769996 39770465 -187754113 + L1MB8 LINE L1 5671 6177 -1 290 298 0 54 chr3 39771589 39771757 -187752821 + T-rich Low_complexity Low_complexity 2 160 0 936 177 0 19 chr3 39771897 39772055 -187752523 - FRAM SINE Alu -9 157 3 2328 78 3 0 chr3 39772422 39772750 -187751828 - AluSq SINE Alu 0 329 1 520 328 39 11 chr3 39772807 39772987 -187751591 - MIR3 SINE MIR -6 202 18 261 223 160 32 chr3 39773105 39773199 -187751379 + MIR SINE MIR 53 158 -104 398 292 36 6 chr3 39773328 39773496 -187751082 + MIR SINE MIR 78 250 -12 44094 49 2 2 chr3 39774010 39780163 -187744415 - L1PA4 LINE L1 -1 6154 1 1176 210 69 57 chr3 39780236 39780691 -187743887 - MLT1B LTR MaLR 0 390 2 377 303 28 0 chr3 39780792 39780901 -187743677 - MIR3 SINE MIR -7 201 90 409 238 112 42 chr3 39781081 39781224 -187743354 - MIR SINE MIR -47 215 63 1410 160 0 95 chr3 39781827 39782133 -187742445 - AluJb SINE Alu 0 312 36 1911 116 78 0 chr3 39782164 39782448 -187742130 + AluSq SINE Alu 1 306 -7 1471 223 67 85 chr3 39782494 39782612 -187741966 + MLT1D LTR MaLR 2 121 -384 2343 81 10 0 chr3 39782612 39782909 -187741669 + AluSq SINE Alu 1 300 -13 1471 223 67 85 chr3 39782909 39783296 -187741282 + MLT1D LTR MaLR 121 498 -7 847 182 0 0 chr3 39783548 39783691 -187740887 + FLAM_C SINE Alu 1 143 0 327 291 45 2 chr3 39783696 39783877 -187740701 + L1ME2 LINE L1 4643 4832 -1314 2295 107 0 3 chr3 39784374 39784682 -187739896 + AluSx SINE Alu 5 311 -1 2056 112 10 3 chr3 39784730 39785034 -187739544 + AluY SINE Alu 1 306 -5 280 276 74 80 chr3 39785074 39785375 -187739203 + L1ME2 LINE L1 5567 5867 -297 1468 67 0 0 chr3 39785375 39785554 -187739024 + L1PA8 LINE L1 5992 6170 -2 280 276 74 80 chr3 39785554 39785578 -187739000 + L1ME2 LINE L1 5867 5890 -274 229 186 47 0 chr3 39785925 39785968 -187738610 + L2 LINE L2 3223 3267 -5 24 53 0 0 chr3 39786462 39786500 -187738078 + AT_rich Low_complexity Low_complexity 1 38 0 360 217 22 11 chr3 39786725 39786817 -187737761 + LTR33 LTR ERVL 1 93 -428 187 313 38 0 chr3 39786843 39786923 -187737655 + MER5B DNA MER1_type 9 91 -87 273 322 128 29 chr3 39787475 39787717 -187736861 + L2 LINE L2 2890 3155 -117 2698 198 65 24 chr3 39787744 39788380 -187736198 + LTR65 LTR ERV1 8 669 0 219 186 0 0 chr3 39788433 39788476 -187736102 + (TGAA)n Simple_repeat Simple_repeat 1 43 0 446 256 60 0 chr3 39788554 39788671 -187735907 + MIR SINE MIR 28 151 -111 283 57 0 0 chr3 39788877 39788912 -187735666 - U2 snRNA snRNA -153 35 1 710 216 54 4 chr3 39788949 39789173 -187735405 + LTR37A LTR ERV1 111 426 0 263 261 254 23 chr3 39790133 39790263 -187734315 - MIR SINE MIR -71 191 32 2182 113 7 3 chr3 39790956 39791257 -187733321 + AluSp SINE Alu 1 302 -11 273 278 56 0 chr3 39792455 39792527 -187732051 - MIR SINE MIR -70 192 117 1669 156 19 35 chr3 39792530 39792844 -187731734 + AluJo SINE Alu 1 309 -3 2054 103 24 21 chr3 39793063 39793354 -187731224 + AluSc SINE Alu 3 294 -15 23 33 0 0 chr3 39793795 39793825 -187730753 + AT_rich Low_complexity Low_complexity 1 30 0 318 309 53 0 chr3 39794549 39794643 -187729935 + MIR3 SINE MIR 58 156 -52 4580 65 36 3 chr3 39794811 39795811 -187728767 + MER11A LTR ERVK 1 1266 0 378 0 0 0 chr3 39796080 39796122 -187728456 + (TCCA)n Simple_repeat Simple_repeat 2 43 0 3442 217 45 52 chr3 39796213 39796907 -187727671 - L1ME1 LINE L1 -9 6157 5459 348 24 0 0 chr3 39796907 39796948 -187727630 + (TG)n Simple_repeat Simple_repeat 2 42 0 3442 217 45 52 chr3 39796948 39797114 -187727464 - L1ME1 LINE L1 -707 5459 5301 2260 72 11 0 chr3 39797114 39797455 -187727123 + AluSp SINE Alu 3 346 0 3442 217 45 52 chr3 39797455 39797601 -187726977 - L1ME1 LINE L1 -865 5301 5155 1673 183 0 29 chr3 39797602 39797908 -187726670 - AluJo SINE Alu -15 297 1 1964 169 36 17 chr3 39797961 39798321 -187726257 + MLT1D LTR MaLR 139 505 0 470 240 8 8 chr3 39798329 39798450 -187726128 - L1ME1 LINE L1 -1260 4886 4766 2091 109 46 0 chr3 39798457 39798742 -187725836 - AluSx SINE Alu -13 299 2 1259 251 49 2 chr3 39798908 39799319 -187725259 + L1M4 LINE L1 4181 4610 -1536 682 167 0 0 chr3 39799359 39799455 -187725123 - AluS SINE Alu -215 97 2 2231 96 28 0 chr3 39800580 39800871 -187723707 + AluSx SINE Alu 1 299 -13 2260 94 13 7 chr3 39801142 39801450 -187723128 - AluSx SINE Alu -2 310 1 188 45 0 0 chr3 39801596 39801618 -187722960 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 460 289 11 68 chr3 39851750 39851798 -187672780 - L1MC5 LINE L1 -82 7879 7830 2517 63 0 3 chr3 39851798 39852099 -187672479 - AluY SINE Alu -11 300 1 460 289 11 68 chr3 39852099 39852240 -187672338 - L1MC5 LINE L1 -131 7830 7701 22 23 0 45 chr3 39852244 39852269 -187672309 + AT_rich Low_complexity Low_complexity 1 26 -16 357 82 0 0 chr3 39852269 39852318 -187672260 + (TA)n Simple_repeat Simple_repeat 1 49 0 2478 94 0 0 chr3 39852318 39852627 -187671951 - AluSq SINE Alu -4 309 1 22 23 0 45 chr3 39852627 39852644 -187671934 + AT_rich Low_complexity Low_complexity 24 42 0 599 250 128 30 chr3 39852804 39853169 -187671409 - Tigger8 DNA MER2_type -143 523 46 2545 167 49 18 chr3 39853384 39853893 -187670685 + L1MB7 LINE L1 5652 6176 -8 738 240 54 50 chr3 39854793 39854850 -187669728 + MER58A DNA MER1_type 1 56 -2364 1847 158 3 14 chr3 39854850 39855147 -187669431 - AluJb SINE Alu -17 295 2 738 240 54 50 chr3 39855147 39855310 -187669268 + MER58A DNA MER1_type 56 222 -2 1796 212 147 11 chr3 39857932 39858409 -187666169 - MER34 LTR ERV1 0 542 1 2283 101 10 0 chr3 39859755 39860052 -187664526 - AluSx SINE Alu -2 310 11 7147 165 49 115 chr3 39861158 39861176 -187663402 + L1MB2 LINE L1 3176 3194 -2977 1374 160 33 118 chr3 39861176 39861345 -187663233 + AluJb SINE Alu 1 130 -182 1934 137 27 10 chr3 39861345 39861644 -187662934 + AluSx SINE Alu 6 309 -3 1374 160 33 118 chr3 39861644 39861806 -187662772 + AluJb SINE Alu 130 304 -8 7147 165 49 115 chr3 39861806 39862320 -187662258 + L1MB2 LINE L1 3194 3741 -2430 2057 129 24 0 chr3 39862320 39862607 -187661971 - AluSx SINE Alu -18 294 1 7147 165 49 115 chr3 39862607 39863604 -187660974 + L1MB2 LINE L1 3741 4803 -1368 721 176 64 0 chr3 39863604 39863729 -187660849 + FAM SINE Alu 33 165 -20 7147 165 49 115 chr3 39863729 39865266 -187659312 + L1MB2 LINE L1 4803 6144 -27 231 36 0 0 chr3 39865274 39865302 -187659276 + (CA)n Simple_repeat Simple_repeat 1 28 0 1606 172 89 3 chr3 39866271 39866574 -187658004 - MER58B DNA MER1_type 0 341 13 550 207 173 0 chr3 39866605 39866755 -187657823 + MER5A DNA MER1_type 14 189 0 1253 204 112 30 chr3 39866895 39867214 -187657364 + L1MC2 LINE L1 5935 6289 -55 2232 107 3 7 chr3 39867214 39867523 -187657055 - AluSx SINE Alu -4 308 1 1253 204 112 30 chr3 39867523 39867570 -187657008 + L1MC2 LINE L1 6289 6331 -13 1174 89 0 0 chr3 39867677 39867823 -187656755 + AluY SINE Alu 148 293 -18 281 247 65 17 chr3 39869632 39869783 -187654795 + MIR SINE MIR 37 192 -62 1824 159 92 52 chr3 39870049 39870452 -187654126 - MSTC LTR MaLR -7 421 3 512 206 35 28 chr3 39870863 39871004 -187653574 - MER5A DNA MER1_type -43 146 5 939 171 0 38 chr3 39871058 39871182 -187653396 + MER58B DNA MER1_type 190 308 -2112 2457 88 0 7 chr3 39871182 39871487 -187653091 - AluSc SINE Alu -6 303 1 939 171 0 38 chr3 39871487 39871520 -187653058 + MER58B DNA MER1_type 308 341 0 217 248 209 0 chr3 39871761 39871852 -187652726 - MIR SINE MIR -81 127 43 1550 207 149 41 chr3 39871906 39872393 -187652185 - MLT1F LTR MaLR 0 542 6 2515 71 0 0 chr3 39872887 39873195 -187651383 + AluY SINE Alu 1 308 -3 835 192 136 5 chr3 39873796 39873994 -187650584 - MER58A DNA MER1_type 0 224 1 264 367 28 0 chr3 39874018 39874127 -187650451 + L2 LINE L2 3136 3247 -25 276 196 18 0 chr3 39874706 39874762 -187649816 - MIR SINE MIR -111 151 95 2125 128 7 0 chr3 39874800 39875096 -187649482 + AluSx SINE Alu 1 298 -14 271 204 45 114 chr3 39875096 39875171 -187649407 + MIR SINE MIR 90 154 -108 2430 82 0 10 chr3 39875171 39875475 -187649103 + AluSx SINE Alu 1 301 -11 271 204 45 114 chr3 39875475 39875531 -187649047 + MIR SINE MIR 154 212 -50 439 168 173 6 chr3 39876040 39876225 -187648353 - MIR SINE MIR -37 225 3 238 315 71 55 chr3 39876316 39876443 -187648135 + MIR3 SINE MIR 11 139 -69 2133 120 0 16 chr3 39876900 39877208 -187647370 - AluSx SINE Alu -9 303 1 1567 168 15 4 chr3 39877829 39878103 -187646475 + AluJo SINE Alu 10 286 -26 1790 132 15 0 chr3 39878381 39878654 -187645924 + AluSx SINE Alu 1 277 -35 2150 103 0 10 chr3 39879273 39879585 -187644993 + AluSq SINE Alu 1 309 -4 964 118 0 22 chr3 39880484 39880620 -187643958 + FLAM_C SINE Alu 1 133 0 333 291 48 75 chr3 39880656 39881038 -187643540 - L2 LINE L2 -183 3089 2719 345 338 31 25 chr3 39881178 39881272 -187643306 + L2 LINE L2 3149 3246 -67 2057 149 0 0 chr3 39881272 39881581 -187642997 - AluSx SINE Alu -3 309 1 345 338 31 25 chr3 39881581 39881646 -187642932 + L2 LINE L2 3246 3309 -4 2036 123 0 0 chr3 39881671 39881982 -187642596 - AluSx SINE Alu 0 311 1 382 217 60 0 chr3 39882147 39882230 -187642348 - MIR SINE MIR -111 151 64 538 211 0 10 chr3 39882344 39882448 -187642130 - FLAM_C SINE Alu -40 103 1 1250 133 10 0 chr3 39882844 39883047 -187641531 - L1MA2 LINE L1 0 6304 6100 491 235 7 29 chr3 39883047 39883183 -187641395 + LTR37B LTR ERV1 3 135 -333 * 626 221 0 15 chr3 39883175 39883306 -187641272 - MER58B DNA MER1_type -9 332 204 3126 178 56 14 chr3 39883316 39883948 -187640630 - MER39 LTR ERV1 0 707 1 668 167 12 68 chr3 39883949 39884037 -187640541 - MER58B DNA MER1_type -147 194 118 2337 84 0 3 chr3 39884037 39884336 -187640242 + AluSp SINE Alu 1 298 -15 668 167 12 68 chr3 39884336 39884409 -187640169 - MER58B DNA MER1_type -223 118 42 402 222 96 89 chr3 39884456 39884726 -187639852 + LTR37B LTR ERV1 197 468 0 373 323 123 7 chr3 39885161 39885316 -187639262 + MIR3 SINE MIR 21 193 -15 1054 178 186 35 chr3 39885412 39885670 -187638908 + AluJo SINE Alu 1 297 -5 759 242 68 89 chr3 39887186 39887644 -187636934 - L1MC4 LINE L1 -5 8037 7590 267 267 13 13 chr3 39887703 39887778 -187636800 - L1MC4 LINE L1 -629 7413 7339 324 210 0 16 chr3 39888716 39888778 -187635800 + MER20 DNA MER1_type 1 61 -158 890 53 0 0 chr3 39888778 39888891 -187635687 - AluY SINE Alu -13 298 186 306 106 106 0 chr3 39888893 39888940 -187635638 + MER20 DNA MER1_type 54 105 -114 1231 216 183 49 chr3 39889563 39890011 -187634567 - MLT1H LTR MaLR 0 549 42 320 287 128 32 chr3 39890026 39890214 -187634364 - L1P5 LINE L1 -346 5808 5603 1039 83 0 0 chr3 39890474 39890606 -187633972 + AluSg SINE Alu 2 133 -177 1998 122 7 3 chr3 39890606 39890902 -187633676 + AluSq SINE Alu 1 297 -16 425 345 61 27 chr3 39890902 39891195 -187633383 - L2 LINE L2 -788 2526 2224 1133 143 22 0 chr3 39891237 39891419 -187633159 - MER5A DNA MER1_type 0 189 4 705 209 29 0 chr3 39892119 39892258 -187632320 + MIR SINE MIR 102 244 -18 2154 114 3 0 chr3 39892847 39893155 -187631423 - AluSx SINE Alu -3 309 1 561 202 151 1 chr3 39894492 39894655 -187629923 + L1ME3 LINE L1 5727 5912 -250 1606 207 30 3 chr3 39894662 39894962 -187629616 + MER58B DNA MER1_type 5 312 -29 392 148 171 11 chr3 39894959 39895047 -187629531 - MLT1D LTR MaLR -133 372 271 * 457 224 61 0 chr3 39895075 39895173 -187629405 - MLT1D LTR MaLR -330 175 72 2540 208 57 80 chr3 39895209 39895415 -187629163 - MER21B LTR ERV1 -60 803 594 1232 171 78 91 chr3 39895415 39895866 -187628712 - LTR56 LTR ERV1 0 445 1 2540 208 57 80 chr3 39895866 39896382 -187628196 - MER21B LTR ERV1 -269 594 98 392 208 0 94 chr3 39896493 39896599 -187627979 - MER21B LTR ERV1 -767 96 1 526 167 0 0 chr3 39896607 39896685 -187627893 - MLT1D LTR MaLR -426 79 2 1717 140 18 22 chr3 39896685 39896963 -187627615 + MER61B LTR ERV1 1 277 -148 354 183 0 0 chr3 39896958 39897018 -187627560 - AluJ SINE Alu -109 193 134 * 772 170 0 15 chr3 39897018 39897153 -187627425 - AluJ SINE Alu -169 133 1 560 216 81 20 chr3 39897153 39897301 -187627277 + MER5A DNA MER1_type 33 189 0 609 118 0 0 chr3 39897366 39897451 -187627127 - MER61B LTR ERV1 -29 396 312 733 104 0 0 chr3 39897457 39897553 -187627025 + AluJb SINE Alu 198 293 -19 1744 167 10 0 chr3 39898029 39898322 -187626256 - AluSx SINE Alu -14 298 3 2358 97 0 0 chr3 39898665 39898975 -187625603 - AluSx SINE Alu -2 310 1 2557 42 0 3 chr3 39899563 39899871 -187624707 - AluY SINE Alu -4 307 1 482 275 90 0 chr3 39900633 39900822 -187623756 + MIR SINE MIR 57 262 0 889 258 55 24 chr3 39901026 39901317 -187623261 + L1MC4a LINE L1 5525 5824 -1984 2093 110 7 7 chr3 39901317 39901625 -187622953 + AluSq SINE Alu 1 308 -5 329 335 90 30 chr3 39901720 39901920 -187622658 + L1MC4a LINE L1 5987 6198 -1610 728 174 116 6 chr3 39902225 39902397 -187622181 - AluSx SINE Alu -120 192 2 309 58 0 94 chr3 39903259 39903312 -187621266 - AluSc SINE Alu -3 296 252 6857 69 32 0 chr3 39904191 39905157 -187619421 - L1P LINE L1 -1102 5044 4048 1167 232 165 77 chr3 39905360 39905647 -187618931 + HAL1 LINE L1 164 424 -2083 811 179 4 118 chr3 39905647 39905692 -187618886 - MER20 DNA MER1_type -1 218 169 2247 98 0 0 chr3 39905692 39905987 -187618591 - AluSx SINE Alu -17 295 1 811 179 4 118 chr3 39905987 39906187 -187618391 - MER20 DNA MER1_type -50 169 1 1167 232 165 77 chr3 39906187 39906493 -187618085 + HAL1 LINE L1 424 809 -1698 388 312 0 29 chr3 39906570 39906743 -187617835 + C-rich Low_complexity Low_complexity 5 172 0 256 212 0 40 chr3 39906780 39906879 -187617699 + C-rich Low_complexity Low_complexity 5 99 0 436 360 11 0 chr3 39906927 39907102 -187617476 + C-rich Low_complexity Low_complexity 1 177 0 2745 127 13 33 chr3 39907244 39907700 -187616878 - L1MA6 LINE L1 -361 5939 5493 2145 103 7 3 chr3 39907703 39908004 -187616574 - AluSc SINE Alu -7 302 1 892 125 0 0 chr3 39908012 39908140 -187616438 - AluSq/x SINE Alu -185 128 1 252 301 52 7 chr3 39908392 39908528 -187616050 + L1P LINE L1 4905 5046 -1100 1857 134 10 24 chr3 39908605 39908903 -187615675 + AluJo SINE Alu 1 294 -18 1942 120 6 49 chr3 39909074 39909400 -187615178 + AluSx SINE Alu 1 312 0 913 165 77 0 chr3 39909532 39909702 -187614876 + MER5A DNA MER1_type 1 183 -6 1147 220 76 23 chr3 39909737 39910041 -187614537 + L1ME3A LINE L1 5850 6169 -1 1851 139 3 41 chr3 39910153 39910469 -187614109 - AluSx SINE Alu -8 304 1 521 253 131 23 chr3 39910471 39910819 -187613759 + L1MC4a LINE L1 5547 5781 -340 2333 67 0 7 chr3 39910960 39911260 -187613318 - AluSc SINE Alu -11 298 1 768 305 92 68 chr3 39912399 39913315 -187611263 + L2 LINE L2 2288 3246 -26 224 287 69 35 chr3 39913396 39913483 -187611095 - MIR SINE MIR -78 130 41 413 258 214 22 chr3 39913983 39914212 -187610366 + MER102a DNA MER1_type 58 330 0 1050 133 0 6 chr3 39914271 39914436 -187610142 + AluSg/x SINE Alu 132 295 -15 232 309 25 0 chr3 39915383 39915464 -187609114 - L2 LINE L2 -192 3080 2998 270 324 110 23 chr3 39915830 39916049 -187608529 + MARNA DNA Mariner 279 516 -70 1015 203 13 47 chr3 39916316 39916497 -187608081 - MER58A DNA MER1_type -2196 224 50 1849 112 52 0 chr3 39916497 39916785 -187607793 + AluSx SINE Alu 1 302 0 1015 203 13 47 chr3 39916785 39916834 -187607744 - MER58A DNA MER1_type -2370 50 1 22 35 0 0 chr3 39916885 39916914 -187607664 + AT_rich Low_complexity Low_complexity 1 29 0 237 261 46 15 chr3 39917019 39917084 -187607494 - MIR SINE MIR -114 148 82 282 189 14 14 chr3 39917342 39917416 -187607162 - Charlie8 DNA MER1_type -1906 511 438 * 352 279 0 36 chr3 39917415 39917526 -187607052 - Charlie8 DNA MER1_type -2224 193 87 693 194 47 52 chr3 39917903 39918090 -187606488 + MER5A DNA MER1_type 4 189 0 634 209 73 124 chr3 39918106 39918156 -187606422 - MER46C DNA MER2_type -1 337 286 2228 93 3 0 chr3 39918156 39918456 -187606122 - AluSp SINE Alu -12 301 1 634 209 73 124 chr3 39918456 39918760 -187605818 - MER46C DNA MER2_type -52 286 1 183 139 28 28 chr3 39919176 39919212 -187605366 + L2 LINE L2 3197 3232 -81 2193 115 0 6 chr3 39919238 39919552 -187605026 - AluSx SINE Alu 0 312 1 476 250 18 30 chr3 39919562 39919702 -187604876 - MIR SINE MIR -13 249 113 1258 265 120 19 chr3 39920376 39920802 -187603776 - MLT1J LTR MaLR -42 469 1 423 230 86 3 chr3 39920971 39921079 -187603499 - MER5A DNA MER1_type -72 106 1 862 112 22 8 chr3 39921298 39921432 -187603146 + AluJo SINE Alu 1 136 -176 2152 114 3 0 chr3 39921432 39921739 -187602839 + AluY SINE Alu 1 308 -3 291 221 182 0 chr3 39921994 39922071 -187602507 + MLT1J LTR MaLR 4 94 -417 441 277 157 19 chr3 39922142 39922409 -187602169 + MLT1J LTR MaLR 203 506 -5 2068 115 3 13 chr3 39922641 39922955 -187601623 - AluSx SINE Alu 0 312 2 294 253 12 12 chr3 39923752 39923835 -187600743 + L1ME LINE L1 5690 5772 -349 23 0 0 0 chr3 39925511 39925534 -187599044 + AT_rich Low_complexity Low_complexity 1 23 0 2175 84 0 3 chr3 39926353 39926649 -187597929 - AluY SINE Alu -16 295 1 21 0 0 0 chr3 39926649 39926670 -187597908 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 39926966 39926990 -187597588 + AT_rich Low_complexity Low_complexity 1 24 0 33 73 0 0 chr3 39927202 39927270 -187597308 + GC_rich Low_complexity Low_complexity 1 68 0 863 85 62 15 chr3 39927494 39927624 -187596954 - L1PA11 LINE L1 -4 6170 6035 1733 122 0 4 chr3 39927627 39927864 -187596714 - AluSq SINE Alu -77 236 1 2308 123 0 0 chr3 39928484 39928793 -187595785 - AluSx SINE Alu -3 309 1 310 261 43 0 chr3 39929393 39929485 -187595093 - LTR67 LTR ERVL -363 194 99 297 311 108 29 chr3 39929548 39929827 -187594751 + L2 LINE L2 2763 3060 -212 2204 112 3 3 chr3 39930151 39930447 -187594131 + AluSx SINE Alu 1 296 -16 247 353 10 39 chr3 39931303 39931405 -187593173 - L3 LINE CR1 -12 1565 1467 2412 69 3 13 chr3 39931809 39932115 -187592463 + AluSp SINE Alu 11 313 0 338 316 75 26 chr3 39933297 39933525 -187591053 - MIR SINE MIR -12 250 12 253 236 34 0 chr3 39933699 39933788 -187590790 + CT-rich Low_complexity Low_complexity 1 92 0 865 90 16 64 chr3 39933789 39933893 -187590685 + (TTCC)n Simple_repeat Simple_repeat 2 95 -85 1688 129 66 0 chr3 39933893 39934134 -187590444 - AluSx SINE Alu -55 257 1 865 90 16 64 chr3 39934134 39934217 -187590361 + (TTCC)n Simple_repeat Simple_repeat 95 180 0 341 226 97 0 chr3 39934292 39934385 -187590193 + MER92B LTR ERV1 1 102 -534 2379 95 13 0 chr3 39934403 39934707 -187589871 - AluSp SINE Alu -5 308 1 881 112 132 71 chr3 39934747 39934944 -187589634 - MER67C LTR ERV1 -248 462 254 353 178 178 17 chr3 39934969 39935021 -187589557 - MER66A LTR ERV1 -52 426 384 2296 98 0 3 chr3 39935021 39935317 -187589261 + AluSq SINE Alu 1 295 -18 353 178 178 17 chr3 39935317 39935382 -187589196 - MER66A LTR ERV1 -94 384 290 291 175 0 0 chr3 39935387 39935444 -187589134 + CT-rich Low_complexity Low_complexity 2 58 0 1015 175 26 42 chr3 39935454 39935643 -187588935 - AluJo SINE Alu -126 186 1 4821 153 58 2 chr3 39935643 39936446 -187588132 + MER6 DNA MER2_type 14 861 -4 404 32 0 81 chr3 39936471 39936533 -187588045 + MLT2B1 LTR ERVL 464 520 0 346 213 0 83 chr3 39936535 39936643 -187587935 + MER5A DNA MER1_type 13 111 -78 184 309 32 43 chr3 39937664 39937758 -187586820 - MIR SINE MIR -121 141 49 561 244 102 43 chr3 39937767 39938225 -187586353 + MLT1H1 LTR MaLR 3 543 -12 408 195 80 44 chr3 39938587 39938700 -187585878 + L1ME4a LINE L1 5972 6088 -33 1468 122 0 108 chr3 39939061 39939357 -187585221 + AluJb SINE Alu 38 301 -11 2244 122 3 0 chr3 39939568 39939872 -187584706 - AluSq SINE Alu -8 305 1 362 269 88 31 chr3 39939886 39940079 -187584499 - L2 LINE L2 -5 3308 3105 612 258 72 16 chr3 39940089 39940326 -187584252 + MLT1G1 LTR MaLR 3 213 -377 673 202 8 0 chr3 39940335 39940454 -187584124 + FLAM_C SINE Alu 1 120 -13 1302 244 45 6 chr3 39940455 39940791 -187583787 + L1ME3 LINE L1 5784 6132 -30 2307 98 0 3 chr3 39940998 39941303 -187583275 - AluY SINE Alu -7 304 1 1831 164 3 3 chr3 39941305 39941598 -187582980 - AluSx SINE Alu -13 299 7 760 124 0 0 chr3 39941600 39941705 -187582873 - AluJo SINE Alu -173 139 35 313 188 71 24 chr3 39942032 39942117 -187582461 + MLT1J LTR MaLR 416 504 -7 427 276 43 22 chr3 39942207 39942392 -187582186 - L1MEc LINE L1 -5353 1043 855 225 361 24 0 chr3 39942543 39942626 -187581952 - LTR16C LTR ERVL -358 133 49 2482 64 7 0 chr3 39942736 39943033 -187581545 + AluSp SINE Alu 1 299 -14 295 275 18 28 chr3 39943427 39943536 -187581042 + MIR3 SINE MIR 96 203 -5 292 265 148 75 chr3 39943658 39943911 -187580667 + L1ME4a LINE L1 5608 5841 -280 2032 128 3 31 chr3 39943911 39944232 -187580346 + AluSq SINE Alu 1 312 -1 292 265 148 75 chr3 39944232 39944457 -187580121 + L1ME4a LINE L1 5841 6121 0 1071 282 92 34 chr3 39945035 39945258 -187579320 + LTR16C LTR ERVL 89 344 -147 2117 121 13 3 chr3 39945258 39945565 -187579013 + AluSx SINE Alu 1 310 -2 1071 282 92 34 chr3 39945565 39945720 -187578858 + LTR16C LTR ERVL 344 489 -2 663 266 44 18 chr3 39946333 39946562 -187578016 + L1MA9 LINE L1 6040 6274 -38 1535 170 0 24 chr3 39946574 39946896 -187577682 + AluSx SINE Alu 1 315 0 477 84 0 0 chr3 39947621 39947692 -187576886 + (GGGGA)n Simple_repeat Simple_repeat 3 73 0 1227 111 106 0 chr3 39947694 39947902 -187576676 + L1PA14 LINE L1 5932 6161 0 601 178 20 0 chr3 39947967 39948068 -187576510 - MER94 DNA DNA -29 105 3 343 282 169 0 chr3 39948283 39948407 -187576171 - MIR3 SINE MIR -6 202 58 378 239 0 11 chr3 39948429 39948517 -187576061 + MER5A DNA MER1_type 9 95 -94 1827 209 36 58 chr3 39948534 39949002 -187575576 - LTR40c LTR ERVL -5 460 3 2371 68 0 0 chr3 39949026 39949304 -187575274 - AluSq SINE Alu -17 296 19 1458 145 40 13 chr3 39949305 39949532 -187575046 - AluSg1 SINE Alu -76 233 1 181 0 69 0 chr3 39949551 39949580 -187574998 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 492 204 232 0 chr3 39950254 39950396 -187574182 + MER5A DNA MER1_type 9 183 -6 1144 289 48 50 chr3 39950542 39950998 -187573580 + MLT1J LTR MaLR 24 478 -33 405 266 50 7 chr3 39951587 39951726 -187572852 - MIR SINE MIR -50 212 68 304 285 124 29 chr3 39951946 39952083 -187572495 - MIR3 SINE MIR -23 185 36 1830 151 14 0 chr3 39952386 39952664 -187571914 - AluJb SINE Alu -7 305 24 25 31 0 0 chr3 39952935 39952967 -187571611 + AT_rich Low_complexity Low_complexity 1 32 0 1500 159 32 62 chr3 39952972 39953280 -187571298 + AluJo SINE Alu 1 299 -13 270 310 20 41 chr3 39953936 39954133 -187570445 + L1ME3 LINE L1 4243 4435 -1711 418 298 28 33 chr3 39954143 39954358 -187570220 + L1ME3 LINE L1 5735 5948 -214 1858 151 7 0 chr3 39954656 39954930 -187569648 + AluJb SINE Alu 5 283 -29 204 40 0 0 chr3 39954930 39954955 -187569623 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 212 214 0 0 chr3 39955186 39955228 -187569350 + MIR3 SINE MIR 156 197 -11 24 32 0 0 chr3 39955685 39955716 -187568862 + AT_rich Low_complexity Low_complexity 1 31 0 2130 97 36 0 chr3 39955717 39955996 -187568582 - AluSg SINE Alu -21 289 1 850 206 60 14 chr3 39955996 39956214 -187568364 + L1MC5 LINE L1 7698 7925 -36 315 0 0 0 chr3 39956537 39956572 -187568006 + (CA)n Simple_repeat Simple_repeat 2 36 0 2263 89 0 10 chr3 39956574 39956865 -187567713 - AluSx SINE Alu -24 288 1 213 244 0 0 chr3 39956872 39956913 -187567665 - L2 LINE L2 -17 3296 3256 335 252 101 8 chr3 39957105 39957174 -187567404 + MER5A DNA MER1_type 45 106 -83 1858 151 22 26 chr3 39957174 39957485 -187567093 - AluSx SINE Alu -2 310 1 335 252 101 8 chr3 39957485 39957534 -187567044 + MER5A DNA MER1_type 106 174 -15 235 235 71 12 chr3 39957682 39957767 -187566811 - MIR SINE MIR -124 138 49 2319 99 0 0 chr3 39957921 39958213 -187566365 + AluSq SINE Alu 1 292 -21 356 177 20 7 chr3 39958229 39958376 -187566202 + (TA)n Simple_repeat Simple_repeat 1 149 0 1855 167 3 6 chr3 39959621 39959932 -187564646 + AluSq SINE Alu 4 313 0 1734 185 3 0 chr3 39960049 39960341 -187564237 - AluSx SINE Alu -17 295 3 4496 133 63 51 chr3 39960424 39961695 -187562883 - pTR5 LTR ERV1 -125 2212 6 241 313 0 48 chr3 39961986 39962069 -187562509 + L3 LINE CR1 1480 1558 -19 1511 166 6 113 chr3 39962855 39962974 -187561604 + AluJo SINE Alu 1 131 -171 262 0 53 0 chr3 39962974 39963012 -187561566 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1511 166 6 113 chr3 39963012 39963218 -187561360 + AluJo SINE Alu 131 291 -11 806 218 0 6 chr3 39963220 39963376 -187561202 + FRAM SINE Alu 1 154 -22 206 238 0 0 chr3 39963458 39963500 -187561078 + (CA)n Simple_repeat Simple_repeat 2 43 0 4417 253 68 38 chr3 39963550 39965069 -187559509 - L2 LINE L2 0 3313 1733 1915 123 39 0 chr3 39965069 39965353 -187559225 + AluSx SINE Alu 1 295 -17 4417 253 68 38 chr3 39965353 39965661 -187558917 - L2 LINE L2 -1580 1733 1436 777 237 19 14 chr3 39965661 39965876 -187558702 + HAL1 LINE L1 1431 1646 -861 791 224 141 9 chr3 39965883 39966299 -187558279 + LTR33 LTR ERVL 1 521 0 250 257 43 14 chr3 39966301 39966371 -187558207 + HAL1 LINE L1 1652 1723 -784 726 271 101 49 chr3 39966374 39966612 -187557966 + HAL1 LINE L1 1775 2036 -471 2457 93 0 0 chr3 39966612 39966924 -187557654 + AluSx SINE Alu 1 312 0 726 271 101 49 chr3 39966924 39967013 -187557565 + HAL1 LINE L1 2036 2119 -388 186 238 0 0 chr3 39967239 39967281 -187557297 + MIR SINE MIR 81 122 -140 214 114 29 0 chr3 39967310 39967345 -187557233 + L2 LINE L2 3219 3254 -18 216 0 0 0 chr3 39967765 39967789 -187556789 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1719 146 32 0 chr3 39967791 39968044 -187556534 - AluJb SINE Alu -32 280 20 815 256 44 24 chr3 39968135 39968385 -187556193 - MIR SINE MIR -1 261 7 33 25 0 0 chr3 39969358 39969398 -187555180 + GC_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr3 39970795 39970815 -187553763 + (TTG)n Simple_repeat Simple_repeat 2 21 0 625 226 47 42 chr3 39971010 39971200 -187553378 + MIR SINE MIR 14 204 -58 21 71 0 0 chr3 39971347 39971389 -187553189 + AT_rich Low_complexity Low_complexity 1 42 0 1865 162 7 3 chr3 39972132 39972265 -187552313 + AluJb SINE Alu 1 132 -180 2363 97 3 0 chr3 39972265 39972564 -187552014 + AluSx SINE Alu 1 300 -12 1865 162 7 3 chr3 39972564 39972749 -187551829 + AluJb SINE Alu 132 312 0 208 246 15 31 chr3 39973000 39973065 -187551513 - MIR SINE MIR -119 143 80 1993 103 48 0 chr3 39973496 39973798 -187550780 - AluSp SINE Alu 0 316 2 267 204 40 164 chr3 39973952 39973985 -187550593 - MIR SINE MIR -114 148 112 1888 166 0 10 chr3 39973985 39974281 -187550297 - AluJb SINE Alu -19 293 1 267 204 40 164 chr3 39974281 39974361 -187550217 - MIR SINE MIR -150 112 56 2117 112 14 0 chr3 39974361 39974657 -187549921 + AluSx SINE Alu 1 300 -12 267 204 40 164 chr3 39974657 39974694 -187549884 - MIR SINE MIR -206 56 16 206 292 108 8 chr3 39974939 39975059 -187549519 + MIR3 SINE MIR 76 207 -1 1241 200 9 5 chr3 39975696 39975916 -187548662 - MER58A DNA MER1_type -3 221 1 1420 176 3 48 chr3 39975916 39976243 -187548335 - AluJo SINE Alu 0 320 7 245 229 0 0 chr3 39976328 39976376 -187548202 + L2 LINE L2 3264 3311 -2 214 208 83 104 chr3 39976653 39976676 -187547902 + MIR3 SINE MIR 66 88 -120 2177 129 0 3 chr3 39976676 39976978 -187547600 + AluSx SINE Alu 1 301 -11 214 208 83 104 chr3 39976978 39977050 -187547528 + MIR3 SINE MIR 88 159 -49 315 288 38 38 chr3 39977073 39977205 -187547373 - L2 LINE L2 0 3272 3141 231 198 63 72 chr3 39977568 39977641 -187546937 - L1ME4a LINE L1 -5 6116 6043 1442 191 62 17 chr3 39977641 39977929 -187546649 + AluJo SINE Alu 1 301 -11 231 198 63 72 chr3 39977929 39977966 -187546612 - L1ME4a LINE L1 -78 6043 6007 1640 156 45 14 chr3 39977973 39978261 -187546317 - AluJo SINE Alu -1 311 15 254 175 0 0 chr3 39978529 39978569 -187546009 - L1ME LINE L1 -462 5659 5620 2223 110 0 3 chr3 39978620 39978921 -187545657 - AluY SINE Alu -11 300 1 2344 93 6 0 chr3 39979235 39979546 -187545032 - AluSp SINE Alu 0 313 1 2115 117 7 0 chr3 39979816 39980115 -187544463 - AluSx SINE Alu -11 301 1 1739 169 14 0 chr3 39980729 39981008 -187543570 + AluJb SINE Alu 1 283 -29 761 180 31 0 chr3 39981081 39981209 -187543369 + FLAM_A SINE Alu 1 132 -1 188 362 121 9 chr3 39981255 39981371 -187543207 - MIR3 SINE MIR -36 172 44 2409 71 3 3 chr3 39981410 39981707 -187542871 - AluSp SINE Alu -16 297 1 234 91 0 0 chr3 39981829 39981862 -187542716 + (T)n Simple_repeat Simple_repeat 1 33 0 464 182 136 0 chr3 39981862 39981972 -187542606 + MER58C DNA MER1_type 79 203 -12 1357 135 5 5 chr3 39982035 39982235 -187542343 - AluJb SINE Alu -27 285 86 2220 109 0 25 chr3 39982716 39983036 -187541542 - AluSq SINE Alu 0 313 2 1573 208 40 0 chr3 39983437 39983735 -187540843 + AluJo SINE Alu 1 310 -2 360 320 106 29 chr3 39983989 39984313 -187540265 - L2 LINE L2 -181 3091 2736 390 239 56 46 chr3 39984331 39984528 -187540050 - L1MC4 LINE L1 -15 8027 7829 2201 125 3 0 chr3 39985102 39985407 -187539171 + AluSx SINE Alu 1 306 -6 184 309 29 15 chr3 39985524 39985592 -187538986 - L2 LINE L2 -15 3257 3189 254 244 179 0 chr3 39985719 39985797 -187538781 + MIR3 SINE MIR 114 205 -3 431 278 86 13 chr3 39986396 39986547 -187538031 + MIR SINE MIR 18 179 -83 1478 201 0 7 chr3 39986917 39987190 -187537388 - AluJb SINE Alu -12 300 30 2161 67 34 0 chr3 39987276 39987578 -187537000 + AluSc SINE Alu 1 311 0 365 228 40 199 chr3 39987623 39987809 -187536769 - L2 LINE L2 -38 3275 3192 583 190 25 25 chr3 39987809 39987930 -187536648 + FLAM_C SINE Alu 2 122 -11 365 228 40 199 chr3 39987930 39988165 -187536413 - L2 LINE L2 -121 3192 2921 289 307 165 25 chr3 39988202 39988518 -187536060 - L2 LINE L2 -940 2374 2015 293 291 152 68 chr3 39988603 39988971 -187535607 + L2 LINE L2 2569 2967 -347 638 175 35 0 chr3 39989311 39989425 -187535153 - FLAM_C SINE Alu -15 118 1 994 179 19 0 chr3 39989429 39989591 -187534987 + MER5A DNA MER1_type 2 166 -23 183 264 19 19 chr3 39989592 39989645 -187534933 + MER5A DNA MER1_type 136 188 -1 2400 88 3 0 chr3 39989814 39990121 -187534457 - AluSp SINE Alu -5 308 1 366 129 129 0 chr3 39990452 39990537 -187534041 - L1MA8 LINE L1 -2 6289 6194 25 0 0 0 chr3 39990920 39990945 -187533633 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr3 39991206 39991231 -187533347 + AT_rich Low_complexity Low_complexity 1 25 0 2300 143 35 56 chr3 39991390 39991806 -187532772 - L1MA8 LINE L1 -2 6289 5885 1843 135 39 30 chr3 39991806 39992140 -187532438 - MER1B DNA MER1_type 0 337 1 2300 143 35 56 chr3 39992140 39992241 -187532337 - L1MA8 LINE L1 -406 5885 5783 219 241 25 25 chr3 39992261 39992340 -187532238 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 800 103 34 62 chr3 39992340 39992486 -187532092 - L1MA8 LINE L1 -502 5789 5648 2112 97 4 4 chr3 39992987 39993287 -187531291 - AluSg SINE Alu 0 300 1 2310 115 0 0 chr3 39993820 39994124 -187530454 - AluSx SINE Alu -8 304 1 225 203 31 16 chr3 39994168 39994232 -187530346 + MLT1K LTR MaLR 514 578 -10 1886 89 100 4 chr3 39995491 39995761 -187528817 - AluSg SINE Alu -14 296 1 1693 159 23 27 chr3 39996166 39996467 -187528111 - AluJb SINE Alu -12 300 1 2334 92 0 29 chr3 39996544 39996860 -187527718 + AluSg1 SINE Alu 1 307 -2 758 218 10 42 chr3 39997085 39997278 -187527300 + MER5A DNA MER1_type 2 188 -1 2073 122 10 0 chr3 39997545 39997841 -187526737 + AluSg SINE Alu 1 299 -11 1617 153 55 0 chr3 39997849 39998124 -187526454 + AluJo SINE Alu 1 290 -22 240 280 148 37 chr3 39998220 39998463 -187526115 - L1ME LINE L1 -267 5854 5585 2253 106 0 3 chr3 39999549 39999852 -187524726 - AluSq SINE Alu -11 302 1 2147 84 0 18 chr3 40000050 40000364 -187524214 + AluY SINE Alu 6 314 0 2369 57 14 0 chr3 40000379 40000683 -187523895 + AluY SINE Alu 1 308 0 2287 81 0 3 chr3 40001499 40001795 -187522783 - AluY SINE Alu -16 295 1 21 0 0 0 chr3 40001795 40001816 -187522762 + AT_rich Low_complexity Low_complexity 1 21 0 512 164 138 17 chr3 40001967 40002083 -187522495 - FLAM_A SINE Alu 0 133 4 861 40 49 18 chr3 40002113 40002341 -187522237 + (TA)n Simple_repeat Simple_repeat 1 235 0 21 36 0 0 chr3 40002398 40002426 -187522152 + AT_rich Low_complexity Low_complexity 1 28 0 30 69 0 0 chr3 40003043 40003101 -187521477 + AT_rich Low_complexity Low_complexity 1 58 0 23 0 0 0 chr3 40004487 40004510 -187520068 + AT_rich Low_complexity Low_complexity 1 23 0 2117 123 10 7 chr3 40006038 40006340 -187518238 + AluSx SINE Alu 1 303 -9 1831 178 14 0 chr3 40006354 40006647 -187517931 + AluJb SINE Alu 3 299 -13 1213 139 0 60 chr3 40006730 40006945 -187517633 - AluJb SINE Alu -24 288 87 180 0 0 0 chr3 40007706 40007726 -187516852 + (TA)n Simple_repeat Simple_repeat 1 20 0 2168 114 7 7 chr3 40007732 40008030 -187516548 - AluSx SINE Alu -14 298 1 1039 148 120 10 chr3 40008183 40008392 -187516186 + MER46A DNA MER2_type 5 236 0 698 232 140 51 chr3 40008840 40009155 -187515423 - L2 LINE L2 -337 2977 2635 1016 159 67 0 chr3 40009334 40009529 -187515049 - MER3 DNA MER1_type -1 208 1 23 33 0 0 chr3 40009971 40010001 -187514577 + AT_rich Low_complexity Low_complexity 1 30 0 606 242 130 37 chr3 40010088 40010303 -187514275 - MIR SINE MIR -13 249 15 367 326 81 5 chr3 40010887 40011137 -187513441 - L1MC/D LINE L1 -348 5773 5494 25 51 0 0 chr3 40011389 40011428 -187513150 + AT_rich Low_complexity Low_complexity 1 39 0 1657 181 84 35 chr3 40011794 40012070 -187512508 - L1MB7 LINE L1 -2 6182 5921 2285 102 26 0 chr3 40012070 40012374 -187512204 - AluSx SINE Alu 0 312 1 1657 181 84 35 chr3 40012374 40012713 -187511865 - L1MB7 LINE L1 -263 5921 5482 307 247 124 0 chr3 40012714 40012811 -187511767 - HAL1 LINE L1 -2322 185 77 1028 118 0 0 chr3 40012905 40013041 -187511537 - AluSx SINE Alu -19 293 158 850 107 0 0 chr3 40013041 40013153 -187511425 - AluSx SINE Alu -200 112 1 225 0 0 0 chr3 40013534 40013559 -187511019 + (TG)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr3 40014127 40014150 -187510428 + (TA)n Simple_repeat Simple_repeat 2 24 0 1727 140 89 0 chr3 40014304 40014619 -187509959 + MER2 DNA MER2_type 1 343 -1 22 0 0 0 chr3 40014637 40014659 -187509919 + AT_rich Low_complexity Low_complexity 1 22 0 2061 91 18 4 chr3 40015096 40015372 -187509206 + AluSg SINE Alu 17 296 -14 830 225 116 20 chr3 40015439 40015785 -187508793 - L1ME3A LINE L1 -10 6160 5782 1246 207 52 65 chr3 40015810 40016001 -187508577 - MLT1D LTR MaLR 0 505 320 2430 72 3 0 chr3 40016001 40016308 -187508270 - AluY SINE Alu -3 308 1 1246 207 52 65 chr3 40016308 40016502 -187508076 - MLT1D LTR MaLR -185 320 125 6809 151 73 43 chr3 40016502 40016716 -187507862 - L1MCa LINE L1 -4828 1598 1392 2053 148 0 0 chr3 40016716 40017014 -187507564 - AluJb SINE Alu -14 298 1 6809 151 73 43 chr3 40017014 40018263 -187506315 - L1MCa LINE L1 -5034 1392 85 2377 91 0 0 chr3 40018263 40018561 -187506017 - AluSq SINE Alu -11 302 5 6809 151 73 43 chr3 40018561 40018622 -187505956 - L1MCa LINE L1 -6341 85 27 499 187 81 16 chr3 40018624 40018747 -187505831 - MLT1D LTR MaLR -374 131 1 528 232 34 39 chr3 40018747 40018954 -187505624 - L1ME3A LINE L1 -412 5750 5545 4281 173 48 6 chr3 40018955 40019841 -187504737 + L1MB7 LINE L1 5215 6139 -45 2452 71 0 0 chr3 40019841 40020136 -187504442 + AluY SINE Alu 1 295 -16 4281 173 48 6 chr3 40020136 40020158 -187504420 + L1MB7 LINE L1 6139 6159 -25 677 242 56 0 chr3 40020186 40020401 -187504177 - L1ME3A LINE L1 -619 5545 5319 2407 92 7 0 chr3 40020427 40020732 -187503846 - AluSp SINE Alu -6 307 1 201 39 0 0 chr3 40020759 40020785 -187503793 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 236 315 71 55 chr3 40021039 40021166 -187503412 + MIR3 SINE MIR 11 139 -69 2115 120 0 16 chr3 40021621 40021929 -187502649 - AluSx SINE Alu -9 303 1 1889 165 0 0 chr3 40022550 40022835 -187501743 + AluJb SINE Alu 10 294 -18 1549 158 16 66 chr3 40022986 40023289 -187501289 + AluJb SINE Alu 1 288 -24 287 283 101 19 chr3 40023640 40023799 -187500779 + L1MC4a LINE L1 4076 4247 -1899 2089 143 3 0 chr3 40023804 40024105 -187500473 + AluSq SINE Alu 4 305 -8 1438 191 37 72 chr3 40024324 40024700 -187499878 - MLT1A2 LTR MaLR -11 363 1 1988 145 0 28 chr3 40024739 40025057 -187499521 - AluJo SINE Alu -3 309 1 259 213 62 0 chr3 40025071 40025151 -187499427 - HAL1 LINE L1 -341 2166 2082 246 172 17 0 chr3 40025181 40025239 -187499339 + T-rich Low_complexity Low_complexity 1 59 0 378 254 14 21 chr3 40025611 40025753 -187498825 - HAL1 LINE L1 -677 1830 1690 3134 242 119 61 chr3 40025827 40026458 -187498120 - HAL1 LINE L1 -622 1885 1292 1776 138 98 7 chr3 40026458 40026734 -187497844 - AluJb SINE Alu -11 301 1 3134 242 119 61 chr3 40026734 40027459 -187497119 - HAL1 LINE L1 -1215 1292 611 815 175 4 118 chr3 40027459 40027659 -187496919 + MER20 DNA MER1_type 1 169 -50 2358 98 0 0 chr3 40027659 40027954 -187496624 + AluSx SINE Alu 1 295 -17 815 175 4 118 chr3 40027954 40027999 -187496579 + MER20 DNA MER1_type 169 218 -1 3134 242 119 61 chr3 40027999 40028293 -187496285 - HAL1 LINE L1 -1896 611 336 2376 86 0 13 chr3 40028293 40028458 -187496120 - AluSx SINE Alu -14 298 137 2307 94 0 13 chr3 40028458 40028757 -187495821 - AluSg SINE Alu -15 295 1 2376 86 0 13 chr3 40028757 40028893 -187495685 - AluSx SINE Alu -175 137 1 3134 242 119 61 chr3 40028893 40029011 -187495567 - HAL1 LINE L1 -2171 336 12 280 305 38 0 chr3 40029149 40029280 -187495298 + L1MC4a LINE L1 4907 5042 -1104 1977 134 10 24 chr3 40029360 40029658 -187494920 + AluJo SINE Alu 1 294 -18 1942 120 6 49 chr3 40029829 40030155 -187494423 + AluSx SINE Alu 1 312 0 913 165 77 0 chr3 40030287 40030457 -187494121 + MER5A DNA MER1_type 1 183 -6 1185 220 72 23 chr3 40030492 40030797 -187493781 + L1ME3A LINE L1 5850 6169 -1 1851 139 3 41 chr3 40030909 40031225 -187493353 - AluSx SINE Alu -8 304 1 521 253 131 23 chr3 40031227 40031575 -187493003 + L1MC4a LINE L1 5547 5781 -340 2333 67 0 7 chr3 40031716 40032016 -187492562 - AluSc SINE Alu -11 298 1 768 305 92 68 chr3 40033155 40034071 -187490507 + L2 LINE L2 2288 3246 -26 224 287 69 35 chr3 40034152 40034239 -187490339 - MIR SINE MIR -78 130 41 413 258 214 22 chr3 40034739 40034968 -187489610 + MER102a DNA MER1_type 58 330 0 1050 133 0 6 chr3 40035027 40035192 -187489386 + AluSg/x SINE Alu 132 295 -15 232 309 25 0 chr3 40036139 40036220 -187488358 - L2 LINE L2 -192 3080 2998 270 324 110 23 chr3 40036587 40036806 -187487772 + MARNA DNA Mariner 279 516 -70 1015 203 13 47 chr3 40037073 40037254 -187487324 - MER58A DNA MER1_type -2196 224 50 1849 112 52 0 chr3 40037254 40037542 -187487036 + AluSx SINE Alu 1 302 0 1015 203 13 47 chr3 40037542 40037591 -187486987 - MER58A DNA MER1_type -2370 50 1 22 35 0 0 chr3 40037642 40037671 -187486907 + AT_rich Low_complexity Low_complexity 1 29 0 237 261 46 15 chr3 40037776 40037841 -187486737 - MIR SINE MIR -114 148 82 282 189 14 14 chr3 40038099 40038173 -187486405 - Charlie8 DNA MER1_type -1906 511 438 * 352 279 0 36 chr3 40038172 40038283 -187486295 - Charlie8 DNA MER1_type -2235 182 76 693 194 47 52 chr3 40038660 40038847 -187485731 + MER5A DNA MER1_type 4 189 0 689 226 79 48 chr3 40038863 40038913 -187485665 - MER46C DNA MER2_type -1 337 290 2228 93 3 0 chr3 40038913 40039213 -187485365 - AluSp SINE Alu -12 301 1 689 226 79 48 chr3 40039213 40039517 -187485061 - MER46C DNA MER2_type -48 290 1 2103 116 7 7 chr3 40039994 40040304 -187484274 - AluSx SINE Alu 0 312 3 524 280 21 28 chr3 40040318 40040461 -187484117 - MIR SINE MIR -13 249 108 1258 265 120 19 chr3 40041132 40041558 -187483020 - MLT1J LTR MaLR -42 469 1 423 230 86 3 chr3 40041727 40041835 -187482743 - MER5A DNA MER1_type -72 106 1 862 112 22 8 chr3 40042054 40042188 -187482390 + AluJo SINE Alu 1 136 -176 2152 114 3 0 chr3 40042188 40042495 -187482083 + AluY SINE Alu 1 308 -3 291 221 182 0 chr3 40042750 40042827 -187481751 + MLT1J LTR MaLR 4 94 -417 441 277 157 19 chr3 40042898 40043165 -187481413 + MLT1J LTR MaLR 203 506 -5 2068 115 3 13 chr3 40043397 40043711 -187480867 - AluSx SINE Alu 0 312 2 294 253 12 12 chr3 40044508 40044591 -187479987 + L1ME LINE L1 5690 5772 -349 1823 164 0 3 chr3 40046422 40046727 -187477851 - AluJo SINE Alu -8 304 1 2173 95 0 16 chr3 40046992 40047297 -187477281 + AluSq SINE Alu 1 300 -13 323 302 0 28 chr3 40047324 40047430 -187477148 + Charlie8 DNA MER1_type 143 245 -2172 21 36 0 0 chr3 40048624 40048652 -187475926 + AT_rich Low_complexity Low_complexity 1 28 0 2245 81 0 3 chr3 40048698 40048994 -187475584 + AluSc SINE Alu 1 295 -14 1741 161 0 20 chr3 40049045 40049350 -187475228 + AluJb SINE Alu 1 299 -13 328 305 40 63 chr3 40051805 40052028 -187472550 + MLT1K LTR MaLR 13 230 -358 766 187 30 74 chr3 40052077 40052280 -187472298 - MIR SINE MIR -5 257 64 206 162 0 27 chr3 40052320 40052357 -187472221 + L2 LINE L2 3263 3298 -15 1360 183 29 42 chr3 40052442 40052754 -187471824 - AluJo SINE Alu -4 308 1 293 85 0 0 chr3 40052754 40052801 -187471777 - L1MA7 LINE L1 -45 6246 6200 1632 161 50 7 chr3 40052813 40053112 -187471466 - AluJb SINE Alu 0 312 1 233 296 0 14 chr3 40053241 40053312 -187471266 + MLT1L LTR MaLR 432 501 -114 3122 191 95 9 chr3 40053867 40054582 -187469996 + L1ME1 LINE L1 5382 6161 -5 295 328 91 27 chr3 40054616 40054802 -187469776 + L2 LINE L2 3070 3267 -5 361 189 54 0 chr3 40055187 40055261 -187469317 + MER116 DNA Mariner 2 79 -1 2167 87 10 3 chr3 40055316 40055614 -187468964 + AluSx SINE Alu 1 300 -12 247 275 77 22 chr3 40055661 40055752 -187468826 - MIR SINE MIR -77 131 36 272 244 35 12 chr3 40055817 40055903 -187468675 + L1ME4a LINE L1 5531 5618 -503 230 200 13 13 chr3 40056388 40056463 -187468115 + L1ME4a LINE L1 6047 6121 0 1063 152 0 17 chr3 40056993 40057171 -187467407 + FRAM SINE Alu 1 173 -3 4396 128 63 7 chr3 40057508 40058318 -187466260 + L1MA8 LINE L1 5216 6061 -230 2428 115 15 38 chr3 40058546 40058945 -187465633 - MLT1B LTR MaLR 0 390 1 239 242 16 0 chr3 40058980 40059042 -187465536 + CT-rich Low_complexity Low_complexity 2 64 0 210 37 0 0 chr3 40059886 40059913 -187464665 + (TTTTG)n Simple_repeat Simple_repeat 1 27 0 314 244 61 10 chr3 40060030 40060179 -187464399 - MIR SINE MIR -59 203 16 2306 94 3 0 chr3 40060226 40060533 -187464045 - AluSx SINE Alu -4 308 1 199 254 68 34 chr3 40060723 40060782 -187463796 - L2 LINE L2 -8 3305 3245 370 213 13 0 chr3 40060810 40060885 -187463693 - MIR SINE MIR -11 251 176 1024 231 97 64 chr3 40060895 40061429 -187463149 + MLT1F LTR MaLR 6 592 -3 296 269 8 82 chr3 40061441 40061575 -187463003 - MIR SINE MIR -103 159 36 538 305 133 50 chr3 40061829 40062108 -187462470 + L2 LINE L2 2955 3256 -16 217 366 0 0 chr3 40062129 40062200 -187462378 - L2 LINE L2 -219 3053 2983 365 264 52 69 chr3 40062200 40062374 -187462204 + MER5B DNA MER1_type 2 172 -6 225 224 69 0 chr3 40062416 40062474 -187462104 - MIR SINE MIR -25 237 176 256 289 26 0 chr3 40062803 40062879 -187461699 - L2 LINE L2 -3 3310 3233 757 265 87 17 chr3 40063301 40063531 -187461047 - MIR SINE MIR -3 259 14 2314 60 0 0 chr3 40063998 40064333 -187460245 + AluY SINE Alu 1 335 0 1784 218 3 11 chr3 40064420 40064773 -187459805 - MLT1A2 LTR MaLR -24 350 1 704 283 40 31 chr3 40064773 40064996 -187459582 + MLT1K LTR MaLR 23 247 -341 1507 189 37 53 chr3 40065004 40065384 -187459194 + MLT1B LTR MaLR 1 374 -16 598 197 175 44 chr3 40065443 40065626 -187458952 + MLT1K LTR MaLR 323 529 -59 1536 178 47 10 chr3 40065626 40065924 -187458654 - AluJo SINE Alu -3 309 1 829 176 0 0 chr3 40065938 40066069 -187458509 - FLAM_A SINE Alu -2 131 1 257 114 0 0 chr3 40066680 40066715 -187457863 - MER5A DNA MER1_type -1 188 154 796 177 71 0 chr3 40066756 40066897 -187457681 - MER5A DNA MER1_type -38 151 1 436 208 0 13 chr3 40067347 40067424 -187457154 - MER5A DNA MER1_type 0 189 114 1502 153 80 4 chr3 40067529 40067804 -187456774 - AluJb SINE Alu -16 296 1 868 202 0 11 chr3 40067930 40068108 -187456470 - FRAM SINE Alu 0 176 1 905 158 50 104 chr3 40068182 40068357 -187456221 - AluJo SINE Alu 0 312 152 2358 56 23 0 chr3 40068357 40068661 -187455917 - AluY SINE Alu 0 311 1 905 158 50 104 chr3 40068661 40068725 -187455853 - AluJo SINE Alu -160 152 86 308 336 9 9 chr3 40068726 40068839 -187455739 + L1ME3 LINE L1 5584 5696 -466 236 241 0 0 chr3 40068863 40068917 -187455661 + GA-rich Low_complexity Low_complexity 3 56 0 1171 211 70 102 chr3 40068917 40069358 -187455220 + L1ME3 LINE L1 5732 6158 -4 39 38 0 0 chr3 40069608 40069661 -187454917 + GC_rich Low_complexity Low_complexity 1 53 0 820 157 116 25 chr3 40071408 40071606 -187452972 + AluJo SINE Alu 87 302 -10 2151 100 0 7 chr3 40072510 40072810 -187451768 - AluSc SINE Alu -11 298 1 1611 152 10 30 chr3 40072817 40073114 -187451464 - AluJo SINE Alu -18 294 4 288 290 100 46 chr3 40073131 40073356 -187451222 - MIR SINE MIR -2 260 21 3346 145 48 66 chr3 40073390 40074039 -187450539 + L1MB8 LINE L1 5425 6084 -94 2004 111 0 4 chr3 40074039 40074319 -187450259 + AluSx SINE Alu 2 280 -32 192 40 0 0 chr3 40074319 40074344 -187450234 + (CAA)n Simple_repeat Simple_repeat 3 27 0 3346 145 48 66 chr3 40074344 40074439 -187450139 + L1MB8 LINE L1 6082 6157 -21 970 243 83 99 chr3 40074841 40075267 -187449311 - MER41C LTR ERV1 0 554 138 2319 71 0 3 chr3 40075267 40075561 -187449017 + AluSc SINE Alu 1 293 -16 970 243 83 99 chr3 40075561 40075697 -187448881 - MER41C LTR ERV1 -416 138 1 229 329 82 12 chr3 40076006 40076091 -187448487 - L2 LINE L2 -19 3253 3163 361 283 163 70 chr3 40076192 40076516 -187448062 - L2 LINE L2 0 3313 2932 1694 106 36 18 chr3 40076516 40076791 -187447787 + AluJb SINE Alu 1 280 -32 361 283 163 70 chr3 40076791 40076925 -187447653 - L2 LINE L2 -381 2932 2812 334 170 0 150 chr3 40077012 40077112 -187447466 + MER20B DNA MER1_type 3 87 -696 23 0 0 0 chr3 40077658 40077681 -187446897 + AT_rich Low_complexity Low_complexity 1 23 0 260 207 207 0 chr3 40077700 40077782 -187446796 - L1ME4a LINE L1 -14 6107 6009 2043 117 13 0 chr3 40077835 40078133 -187446445 - AluSx SINE Alu -10 302 1 2131 108 16 3 chr3 40078201 40078506 -187446072 - AluSc SINE Alu 0 309 1 196 42 0 0 chr3 40079898 40079922 -187444656 + (TTTG)n Simple_repeat Simple_repeat 1 180 0 1982 112 0 33 chr3 40079922 40080228 -187444350 - AluSx SINE Alu -1 319 1 320 64 21 0 chr3 40080348 40080395 -187444183 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 1901 106 7 14 chr3 40080397 40080679 -187443899 - AluSg SINE Alu -30 280 1 1581 167 29 20 chr3 40081022 40081328 -187443250 - AluJb SINE Alu -3 309 1 528 194 29 19 chr3 40081331 40081434 -187443144 - MIR SINE MIR -48 214 111 352 254 82 25 chr3 40081503 40081625 -187442953 - L1ME4a LINE L1 -225 5896 5768 2156 112 3 3 chr3 40081952 40082264 -187442314 - AluSx SINE Alu 0 312 1 296 298 112 56 chr3 40082266 40082444 -187442134 - MIR SINE MIR -74 188 1 1479 214 117 93 chr3 40082519 40083107 -187441471 + MLT1E1 LTR MaLR 53 654 0 465 209 95 0 chr3 40083304 40083409 -187441169 - MIR SINE MIR -54 208 94 913 168 0 17 chr3 40083411 40083584 -187440994 + FRAM SINE Alu 1 169 -7 701 285 39 25 chr3 40083896 40084177 -187440401 - L1MC4a LINE L1 -1895 5913 5629 901 206 70 75 chr3 40084472 40084882 -187439696 - LTR16A1 LTR ERVL -4 453 15 827 218 81 21 chr3 40085696 40086107 -187438471 + MLT1D LTR MaLR 1 505 0 2031 103 3 3 chr3 40086689 40086979 -187437599 - AluSc SINE Alu -17 292 3 1959 212 61 15 chr3 40086987 40087463 -187437115 - L1MC4 LINE L1 0 8042 7545 393 284 9 0 chr3 40087740 40087849 -187436729 - MIR SINE MIR -37 225 116 380 343 42 50 chr3 40087892 40088175 -187436403 + L2 LINE L2 3028 3308 -5 349 252 10 29 chr3 40088845 40088948 -187435630 - L2 LINE L2 -1 3271 3171 1852 223 130 20 chr3 40088996 40089535 -187435043 - HsTC2 DNA Tc2 -40 1858 1261 635 86 0 0 chr3 40089598 40089679 -187434899 + AluS SINE Alu 2 82 -230 249 267 40 10 chr3 40089691 40089792 -187434786 - L2 LINE L2 -253 3019 2916 2214 105 0 7 chr3 40090005 40090310 -187434268 + AluSq SINE Alu 3 305 -8 1557 184 47 71 chr3 40090524 40090905 -187433673 - MLT1A2 LTR MaLR -2 372 1 1840 148 0 28 chr3 40090944 40091262 -187433316 - AluJo SINE Alu -3 309 1 260 230 58 0 chr3 40091276 40091363 -187433215 - HAL1 LINE L1 -341 2166 2075 246 172 17 0 chr3 40091386 40091444 -187433134 + T-rich Low_complexity Low_complexity 1 59 0 433 254 14 21 chr3 40091816 40091958 -187432620 - HAL1 LINE L1 -677 1830 1690 3625 236 108 62 chr3 40092032 40092663 -187431915 - HAL1 LINE L1 -622 1885 1285 1653 138 98 7 chr3 40092663 40092939 -187431639 - AluJb SINE Alu -11 301 1 3625 236 108 62 chr3 40092939 40093665 -187430913 - HAL1 LINE L1 -1222 1285 436 836 175 4 118 chr3 40093665 40093865 -187430713 + MER20 DNA MER1_type 1 169 -50 2247 98 0 0 chr3 40093865 40094160 -187430418 + AluSx SINE Alu 1 295 -17 836 175 4 118 chr3 40094160 40094205 -187430373 + MER20 DNA MER1_type 169 218 -1 3625 236 108 62 chr3 40094205 40094496 -187430082 - HAL1 LINE L1 -2071 436 160 1229 103 0 0 chr3 40094499 40094664 -187429914 - AluSg/x SINE Alu -14 296 132 2218 90 0 13 chr3 40094664 40094965 -187429613 - AluSx SINE Alu -15 297 1 1386 198 44 26 chr3 40094965 40095304 -187429274 - L1MB7 LINE L1 -358 5826 5482 332 250 125 0 chr3 40095305 40095409 -187429169 - HAL1 LINE L1 -2322 185 69 960 127 0 25 chr3 40095474 40095632 -187428946 - AluSx SINE Alu -1 311 158 814 107 0 0 chr3 40095632 40095744 -187428834 - AluSx SINE Alu -201 112 1 225 0 0 0 chr3 40096125 40096150 -187428428 + (TG)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr3 40096718 40096741 -187427837 + (TA)n Simple_repeat Simple_repeat 1 23 0 1760 140 89 0 chr3 40096895 40097210 -187427368 + MER2 DNA MER2_type 1 343 -1 22 0 0 0 chr3 40097228 40097250 -187427328 + AT_rich Low_complexity Low_complexity 1 22 0 1966 91 18 4 chr3 40097687 40097963 -187426615 + AluSg SINE Alu 17 296 -14 953 225 116 20 chr3 40098030 40098376 -187426202 - L1ME3A LINE L1 -10 6160 5782 1388 207 52 65 chr3 40098401 40098592 -187425986 - MLT1D LTR MaLR 0 505 320 2396 65 0 0 chr3 40098592 40098900 -187425678 - AluY SINE Alu -3 308 1 1388 207 52 65 chr3 40098900 40099094 -187425484 - MLT1D LTR MaLR -185 320 125 7480 151 73 43 chr3 40099094 40099308 -187425270 - L1MCa LINE L1 -4828 1598 1392 1945 148 0 0 chr3 40099308 40099606 -187424972 - AluJb SINE Alu -14 298 1 7480 151 73 43 chr3 40099606 40100855 -187423723 - L1MCa LINE L1 -5034 1392 85 2273 91 0 0 chr3 40100855 40101153 -187423425 - AluSq SINE Alu -11 302 5 7480 151 73 43 chr3 40101153 40101214 -187423364 - L1MCa LINE L1 -6341 85 27 559 187 81 16 chr3 40101216 40101339 -187423239 - MLT1D LTR MaLR -374 131 1 588 232 34 39 chr3 40101339 40101546 -187423032 - L1ME3A LINE L1 -412 5750 5545 4575 175 49 1 chr3 40101547 40102432 -187422146 + L1MB7 LINE L1 5215 6141 -43 2182 77 0 7 chr3 40102433 40102720 -187421858 + AluSc SINE Alu 1 285 -24 755 234 61 0 chr3 40102779 40102993 -187421585 - L1ME3A LINE L1 -619 5545 5319 2288 92 7 0 chr3 40103019 40103324 -187421254 - AluSp SINE Alu -6 307 1 201 39 0 0 chr3 40103351 40103377 -187421201 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 603 165 23 8 chr3 40103502 40103635 -187420943 - L1MB7 LINE L1 0 6184 6050 5152 206 54 44 chr3 40103638 40104332 -187420246 - L1ME1 LINE L1 -54 6112 5426 1731 175 3 0 chr3 40104332 40104640 -187419938 - AluJb SINE Alu -3 309 1 5152 206 54 44 chr3 40104640 40106077 -187418501 - L1ME1 LINE L1 -740 5426 3947 216 0 0 0 chr3 40106077 40106101 -187418477 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 5152 206 54 44 chr3 40106101 40106324 -187418254 - L1ME1 LINE L1 -2219 3947 3728 587 231 12 75 chr3 40108336 40108509 -187416069 - MIR SINE MIR -2 260 99 233 333 0 0 chr3 40109036 40109105 -187415473 + L2 LINE L2 3202 3270 -2 1463 163 8 4 chr3 40109207 40109452 -187415126 - Tigger5 DNA MER2_type 0 2323 2078 453 171 0 0 chr3 40109439 40109509 -187415069 - Tigger5 DNA MER2_type -2241 82 13 * 1312 257 158 39 chr3 40110520 40111038 -187413540 - MLT1G1 LTR MaLR -15 580 1 870 149 53 132 chr3 40111170 40111330 -187413248 - AluJb SINE Alu -17 295 124 180 0 0 0 chr3 40111330 40111350 -187413228 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2227 69 24 0 chr3 40111352 40111641 -187412937 - AluY SINE Alu -15 296 1 870 149 53 132 chr3 40111641 40111705 -187412873 - AluJb SINE Alu -189 123 86 308 336 9 9 chr3 40111706 40111819 -187412759 + L1ME3 LINE L1 5584 5696 -466 236 241 0 0 chr3 40111843 40111897 -187412681 + GA-rich Low_complexity Low_complexity 3 56 0 1171 211 70 102 chr3 40111897 40112338 -187412240 + L1ME3 LINE L1 5732 6158 -4 39 38 0 0 chr3 40112588 40112641 -187411937 + GC_rich Low_complexity Low_complexity 1 53 0 820 157 116 25 chr3 40114388 40114586 -187409992 + AluJo SINE Alu 87 302 -10 2151 100 0 7 chr3 40115490 40115790 -187408788 - AluSc SINE Alu -11 298 1 1611 152 10 30 chr3 40115797 40116094 -187408484 - AluJo SINE Alu -18 294 4 288 290 100 46 chr3 40116111 40116336 -187408242 - MIR SINE MIR -2 260 21 3346 145 48 66 chr3 40116370 40117019 -187407559 + L1MB8 LINE L1 5425 6084 -94 2004 111 0 4 chr3 40117019 40117299 -187407279 + AluSx SINE Alu 2 280 -32 192 40 0 0 chr3 40117299 40117324 -187407254 + (CAA)n Simple_repeat Simple_repeat 3 27 0 3346 145 48 66 chr3 40117324 40117419 -187407159 + L1MB8 LINE L1 6082 6157 -21 970 243 83 99 chr3 40117821 40118247 -187406331 - MER41C LTR ERV1 0 554 138 2319 71 0 3 chr3 40118247 40118541 -187406037 + AluSc SINE Alu 1 293 -16 970 243 83 99 chr3 40118541 40118677 -187405901 - MER41C LTR ERV1 -416 138 1 229 329 82 12 chr3 40118986 40119071 -187405507 - L2 LINE L2 -19 3253 3163 361 283 163 70 chr3 40119172 40119496 -187405082 - L2 LINE L2 0 3313 2932 1644 117 36 15 chr3 40119496 40119770 -187404808 + AluJb SINE Alu 1 280 -32 361 283 163 70 chr3 40119770 40119904 -187404674 - L2 LINE L2 -381 2932 2812 334 170 0 150 chr3 40119991 40120091 -187404487 + MER20B DNA MER1_type 3 87 -696 23 0 0 0 chr3 40120637 40120660 -187403918 + AT_rich Low_complexity Low_complexity 1 23 0 260 207 207 0 chr3 40120679 40120761 -187403817 - L1ME4a LINE L1 -14 6107 6009 2043 117 13 0 chr3 40120814 40121112 -187403466 - AluSx SINE Alu -10 302 1 2131 108 16 3 chr3 40121180 40121485 -187403093 - AluSc SINE Alu 0 309 1 1982 112 0 33 chr3 40122876 40123206 -187401372 - AluSx SINE Alu 0 320 1 320 64 21 0 chr3 40123326 40123373 -187401205 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 1901 106 7 14 chr3 40123375 40123657 -187400921 - AluSg SINE Alu -30 280 1 1581 167 29 20 chr3 40124000 40124306 -187400272 - AluJb SINE Alu -3 309 1 528 194 29 19 chr3 40124309 40124412 -187400166 - MIR SINE MIR -48 214 111 352 254 82 25 chr3 40124481 40124603 -187399975 - L1ME4a LINE L1 -225 5896 5768 2156 112 3 3 chr3 40124930 40125242 -187399336 - AluSx SINE Alu 0 312 1 296 298 112 56 chr3 40125244 40125422 -187399156 - MIR SINE MIR -74 188 1 1479 214 117 93 chr3 40125497 40126085 -187398493 + MLT1E1 LTR MaLR 53 654 0 465 209 95 0 chr3 40126282 40126387 -187398191 - MIR SINE MIR -54 208 94 913 168 0 17 chr3 40126389 40126562 -187398016 + FRAM SINE Alu 1 169 -7 701 285 39 25 chr3 40126874 40127155 -187397423 - L1MC4a LINE L1 -1895 5913 5629 871 206 69 77 chr3 40127450 40127861 -187396717 - LTR16A1 LTR ERVL -4 453 15 797 230 31 20 chr3 40128675 40128871 -187395707 + MLT1D LTR MaLR 1 198 -307 242 241 35 23 chr3 40128994 40129081 -187395497 - L1MC4a LINE L1 -503 5618 5531 247 275 77 22 chr3 40129146 40129237 -187395341 + MIR SINE MIR 36 131 -77 2167 87 10 3 chr3 40129284 40129582 -187394996 - AluSx SINE Alu -12 300 1 361 189 54 0 chr3 40129637 40129711 -187394867 - MER116 DNA Mariner -1 79 2 295 328 91 27 chr3 40130096 40130282 -187394296 - L2 LINE L2 -5 3267 3070 3122 191 95 9 chr3 40130316 40131031 -187393547 - L1ME1 LINE L1 -5 6161 5382 237 296 0 14 chr3 40131586 40131657 -187392921 - MLT1L LTR MaLR -114 501 432 1737 161 50 7 chr3 40131786 40132085 -187392493 + AluJb SINE Alu 1 312 0 299 85 0 0 chr3 40132097 40132144 -187392434 + L1MA7 LINE L1 6200 6246 -45 1469 183 29 42 chr3 40132144 40132456 -187392122 + AluJo SINE Alu 1 308 -4 190 162 0 27 chr3 40132541 40132578 -187392000 - L2 LINE L2 -15 3298 3263 674 187 30 74 chr3 40132618 40132821 -187391757 + MIR SINE MIR 64 257 -5 311 305 40 63 chr3 40132870 40133093 -187391485 - MLT1K LTR MaLR -358 230 13 1856 161 0 20 chr3 40135550 40135855 -187388723 - AluJb SINE Alu -13 299 1 2374 74 3 3 chr3 40135906 40136202 -187388376 - AluSg SINE Alu -14 296 1 21 36 0 0 chr3 40136248 40136276 -187388302 + AT_rich Low_complexity Low_complexity 1 28 0 318 302 0 28 chr3 40137470 40137576 -187387002 - Charlie8 DNA MER1_type -2172 245 143 2299 95 0 16 chr3 40137603 40137908 -187386670 - AluSq SINE Alu -13 300 1 1943 164 0 3 chr3 40138173 40138478 -187386100 + AluJo SINE Alu 1 304 -8 296 253 12 12 chr3 40140308 40140391 -187384187 - L1ME LINE L1 -349 5772 5690 2193 115 3 13 chr3 40141188 40141502 -187383076 + AluSx SINE Alu 2 312 0 417 281 154 15 chr3 40141734 40142001 -187382577 - MLT1J LTR MaLR -5 506 203 288 221 182 0 chr3 40142072 40142149 -187382429 - MLT1J LTR MaLR -417 94 4 2028 135 13 3 chr3 40142404 40142708 -187381870 - AluY SINE Alu -4 307 1 920 112 22 8 chr3 40142708 40142842 -187381736 - AluJo SINE Alu -176 136 1 386 230 86 3 chr3 40143061 40143169 -187381409 + MER5A DNA MER1_type 1 106 -72 1236 265 120 19 chr3 40143338 40143764 -187380814 + MLT1J LTR MaLR 1 469 -42 468 280 21 28 chr3 40144433 40144576 -187380002 + MIR SINE MIR 108 249 -13 2221 104 0 7 chr3 40144586 40144875 -187379703 + AluSq SINE Alu 1 287 -26 341 288 182 33 chr3 40145113 40145596 -187378982 - L1ME4a LINE L1 -3 6118 5564 420 279 162 0 chr3 40145668 40145822 -187378756 - MIR SINE MIR -16 246 68 1003 189 31 5 chr3 40146226 40146417 -187378161 - MER3 DNA MER1_type -5 204 9 26 50 0 0 chr3 40147860 40147900 -187376678 + AT_rich Low_complexity Low_complexity 1 40 0 2044 142 10 0 chr3 40148022 40148317 -187376261 - AluSx SINE Alu -14 298 1 2434 74 3 0 chr3 40148328 40148625 -187375953 - AluY SINE Alu -13 298 1 472 236 0 71 chr3 40148633 40148773 -187375805 - L1MC5 LINE L1 -34 7927 7798 632 223 12 42 chr3 40148788 40148954 -187375624 - L1MB7 LINE L1 -9 6175 6015 486 0 0 0 chr3 40149408 40149462 -187375116 + (TG)n Simple_repeat Simple_repeat 1 54 0 398 282 111 6 chr3 40149704 40149885 -187374693 - L2 LINE L2 0 3313 3114 457 233 117 63 chr3 40149925 40150148 -187374430 + L1ME4a LINE L1 5880 6114 -7 686 161 109 23 chr3 40150414 40150588 -187373990 + MIR SINE MIR 8 196 -66 682 143 0 9 chr3 40150597 40150702 -187373876 + AluSq/x SINE Alu 2 105 -208 336 266 148 49 chr3 40150813 40151016 -187373562 + MIR SINE MIR 28 250 -12 599 292 56 5 chr3 40151303 40151519 -187373059 + MIR SINE MIR 36 262 0 2155 137 0 3 chr3 40152652 40152965 -187371613 + AluSq SINE Alu 1 312 -1 1605 161 0 45 chr3 40153047 40153333 -187371245 - AluJo SINE Alu -16 296 24 515 274 196 25 chr3 40153390 40153865 -187370713 + L1MC/D LINE L1 5100 5682 -828 2262 96 0 3 chr3 40153865 40154166 -187370412 + AluY SINE Alu 1 300 -11 515 274 196 25 chr3 40154166 40154264 -187370314 + L1MC/D LINE L1 5682 5762 -748 1087 159 48 19 chr3 40154274 40154481 -187370097 + MER20 DNA MER1_type 7 219 0 2350 99 0 0 chr3 40156058 40156352 -187368226 + AluSx SINE Alu 1 294 -18 2149 132 0 0 chr3 40156354 40156658 -187367920 + AluSc SINE Alu 1 304 -5 693 101 8 25 chr3 40157022 40157141 -187367437 - L1PA13 LINE L1 -1 6162 6046 1926 142 3 0 chr3 40158200 40158482 -187366096 - AluJo SINE Alu -16 296 14 840 184 6 50 chr3 40158589 40158768 -187365810 - MER20 DNA MER1_type -27 192 22 257 118 20 0 chr3 40158784 40158835 -187365743 + (CA)n Simple_repeat Simple_repeat 2 53 0 2102 139 3 0 chr3 40158853 40159147 -187365431 + AluSx SINE Alu 1 295 -17 1759 197 0 0 chr3 40159224 40159519 -187365059 + AluSx SINE Alu 1 295 -17 372 288 62 7 chr3 40159892 40160038 -187364540 + MIR SINE MIR 20 173 -89 319 227 15 0 chr3 40160117 40160183 -187364395 - MER116 DNA Mariner -13 67 1 2408 37 44 7 chr3 40160957 40161255 -187363323 + AluY SINE Alu 1 309 -2 5023 163 31 13 chr3 40161472 40161824 -187362754 - L1MB8 LINE L1 0 6178 5834 2027 145 0 17 chr3 40161824 40162120 -187362458 - AluJb SINE Alu -16 296 6 5023 163 31 13 chr3 40162120 40163467 -187361111 - L1MB8 LINE L1 -344 5834 4445 1051 167 0 0 chr3 40163468 40163636 -187360942 - AluJo SINE Alu -8 304 137 1548 191 41 52 chr3 40163650 40164090 -187360488 - L1MB8 LINE L1 -1717 4429 3995 191 320 13 13 chr3 40164577 40164652 -187359926 + MIR3 SINE MIR 133 207 -1 609 173 169 121 chr3 40164986 40165407 -187359171 - Charlie2 DNA MER1_type -1 2861 2421 1186 163 169 49 chr3 40165436 40165675 -187358903 - Charlie2 DNA MER1_type -634 2228 1938 2113 112 0 26 chr3 40165675 40165980 -187358598 - AluSg SINE Alu -13 297 1 1186 163 169 49 chr3 40165980 40166065 -187358513 - Charlie2 DNA MER1_type -924 1938 1865 876 242 57 41 chr3 40166088 40166406 -187358172 + MER46C DNA MER2_type 1 323 -15 920 239 43 80 chr3 40166418 40166491 -187358087 - Charlie2 DNA MER1_type -2467 315 241 2007 154 126 5 chr3 40166491 40166873 -187357705 + MSTA LTR MaLR 1 428 0 920 239 43 80 chr3 40166873 40167126 -187357452 - Charlie2 DNA MER1_type -2541 241 1 848 146 0 29 chr3 40167154 40167291 -187357287 - AluJo SINE Alu -169 133 1 2464 79 0 10 chr3 40168783 40169087 -187355491 + AluSg SINE Alu 1 301 -9 2192 121 3 0 chr3 40169167 40169472 -187355106 + AluSx SINE Alu 2 307 -5 693 101 8 25 chr3 40169836 40169955 -187354623 - L1PA13 LINE L1 -1 6162 6046 1926 142 3 0 chr3 40171015 40171297 -187353281 - AluJo SINE Alu -16 296 14 840 184 6 50 chr3 40171404 40171583 -187352995 - MER20 DNA MER1_type -27 192 22 257 118 20 0 chr3 40171599 40171650 -187352928 + (CA)n Simple_repeat Simple_repeat 2 53 0 2102 139 3 0 chr3 40171668 40171962 -187352616 + AluSx SINE Alu 1 295 -17 1759 197 0 0 chr3 40172039 40172334 -187352244 + AluSx SINE Alu 1 295 -17 372 288 62 7 chr3 40172707 40172853 -187351725 + MIR SINE MIR 20 173 -89 319 227 15 0 chr3 40172932 40172998 -187351580 - MER116 DNA Mariner -13 67 1 2408 37 44 7 chr3 40173772 40174070 -187350508 + AluY SINE Alu 1 309 -2 5023 163 31 13 chr3 40174287 40174639 -187349939 - L1MB8 LINE L1 0 6178 5834 2027 145 0 17 chr3 40174639 40174935 -187349643 - AluJb SINE Alu -16 296 6 5023 163 31 13 chr3 40174935 40176282 -187348296 - L1MB8 LINE L1 -344 5834 4445 1051 167 0 0 chr3 40176283 40176451 -187348127 - FRAM SINE Alu -8 168 1 7536 212 51 40 chr3 40176465 40177040 -187347538 - L1MB8 LINE L1 -1717 4429 3862 1861 179 0 10 chr3 40177040 40177352 -187347226 - AluJb SINE Alu -3 309 1 7536 212 51 40 chr3 40177352 40178113 -187346465 - L1MB8 LINE L1 -2284 3862 3111 2456 157 33 19 chr3 40178113 40178534 -187346044 + MSTB1 LTR MaLR 4 430 -2 7536 212 51 40 chr3 40178534 40179455 -187345123 - L1MB8 LINE L1 -3035 3111 2146 441 278 15 8 chr3 40181365 40181498 -187343080 + MER117 DNA MER1_type 16 149 -48 219 167 0 0 chr3 40181637 40181679 -187342899 + (TA)n Simple_repeat Simple_repeat 2 43 0 462 172 115 33 chr3 40181829 40181951 -187342627 + FLAM_A SINE Alu 1 132 -1 580 275 17 50 chr3 40182917 40183157 -187341421 + MIR SINE MIR 21 252 -10 290 309 47 27 chr3 40183680 40183829 -187340749 + MIR3 SINE MIR 31 182 -26 1800 160 6 49 chr3 40184282 40184607 -187339971 - AluJb SINE Alu -1 311 1 755 204 0 0 chr3 40184697 40184829 -187339749 + FLAM_A SINE Alu 2 133 0 1145 189 87 23 chr3 40185118 40185383 -187339195 + L1MB8 LINE L1 5897 6178 0 292 283 46 13 chr3 40185426 40185578 -187339000 + HAL1 LINE L1 2272 2428 -79 211 235 24 35 chr3 40186871 40186956 -187337622 - MIR3 SINE MIR -112 96 13 232 308 83 0 chr3 40187619 40187739 -187336839 + MIR SINE MIR 19 148 -60 203 217 29 14 chr3 40188592 40188661 -187335917 + MER5A DNA MER1_type 43 112 -77 2330 93 6 13 chr3 40188882 40189194 -187335384 + AluSq SINE Alu 1 310 -3 902 88 59 15 chr3 40189203 40189339 -187335239 + L1PA11 LINE L1 6029 6170 -4 1893 140 41 27 chr3 40189869 40190234 -187334344 + L1MB3 LINE L1 5807 6176 -7 2479 61 0 7 chr3 40190235 40190529 -187334049 - AluY SINE Alu -19 292 1 2116 152 0 0 chr3 40190556 40190866 -187333712 + AluSx SINE Alu 1 310 -2 2901 77 58 16 chr3 40192479 40192909 -187331669 - LTR7 LTR ERV1 -2 448 1 2188 104 91 14 chr3 40192909 40193273 -187331305 - HERVH LTR ERV1 0 7713 7322 1459 120 19 0 chr3 40193271 40193487 -187331091 - HERVH LTR ERV1 -1894 5819 5600 * 9152 138 30 35 chr3 40193488 40195146 -187329432 - HERVH LTR ERV1 -2564 5149 3500 927 122 20 0 chr3 40195145 40195293 -187329285 - HERVH LTR ERV1 -4423 3290 3140 * 15996 90 14 19 chr3 40195287 40198048 -187326530 - HERVH LTR ERV1 -4726 2987 1 2922 62 103 0 chr3 40198050 40198456 -187326122 - LTR7 LTR ERV1 -2 448 1 2378 81 3 31 chr3 40198600 40198922 -187325656 + AluSp SINE Alu 1 313 0 367 254 16 57 chr3 40198932 40199054 -187325524 + HAL1 LINE L1 2064 2180 -327 374 273 76 17 chr3 40199093 40199265 -187325313 - Charlie8 DNA MER1_type -2231 186 5 2345 74 3 10 chr3 40199689 40199986 -187324592 - AluSg SINE Alu -15 295 1 414 314 47 50 chr3 40200443 40200742 -187323836 + LTR16C LTR ERVL 89 386 -105 339 263 0 0 chr3 40200811 40200887 -187323691 + MERVL LTR ERVL 3712 3787 -1698 278 26 26 0 chr3 40201433 40201472 -187323106 + (TG)n Simple_repeat Simple_repeat 2 41 0 1987 101 69 7 chr3 40201698 40201975 -187322603 - AluSp SINE Alu -19 294 1 532 174 14 21 chr3 40202521 40202665 -187321913 + GA-rich Low_complexity Low_complexity 2 144 0 2175 94 7 33 chr3 40203775 40204082 -187320496 - AluY SINE Alu -12 299 1 1486 151 0 9 chr3 40204935 40205160 -187319418 - AluJb SINE Alu -4 308 86 999 122 0 0 chr3 40205541 40205672 -187318906 - AluSq/x SINE Alu -179 133 3 465 313 117 18 chr3 40206287 40206731 -187317847 + HAL1 LINE L1 1145 1632 -875 954 68 0 0 chr3 40206943 40207061 -187317517 - AluY SINE Alu -7 304 187 286 300 58 0 chr3 40207192 40207312 -187317266 + L1MC4 LINE L1 7130 7256 -786 313 298 76 0 chr3 40207416 40207547 -187317031 + L1MC5 LINE L1 7299 7439 -522 273 235 25 12 chr3 40207577 40207658 -187316920 - L1M4 LINE L1 -1805 4341 4260 454 230 95 6 chr3 40207722 40207931 -187316647 + L1ME3A LINE L1 4378 4603 -1543 900 165 6 57 chr3 40207953 40208129 -187316449 + AluJo SINE Alu 113 279 -33 473 165 0 10 chr3 40208132 40208235 -187316343 + GA-rich Low_complexity Low_complexity 3 104 0 5631 132 47 52 chr3 40208252 40208958 -187315620 + L1MA6 LINE L1 4793 5501 -799 2353 92 0 7 chr3 40208958 40209262 -187315316 + AluSc SINE Alu 1 302 -7 5631 132 47 52 chr3 40209262 40209903 -187314675 + L1MA6 LINE L1 5501 6130 -170 963 145 295 13 chr3 40209903 40210130 -187314448 + AluJb SINE Alu 4 294 -8 5631 132 47 52 chr3 40210130 40210301 -187314277 + L1MA6 LINE L1 6130 6300 0 812 162 0 106 chr3 40210603 40210782 -187313796 - FRAM SINE Alu -16 160 1 517 189 0 19 chr3 40210786 40210892 -187313686 - L1 LINE L1 -1433 4713 4610 * 618 299 45 45 chr3 40210887 40211355 -187313223 + L1ME3A LINE L1 5370 5837 -333 2193 107 3 7 chr3 40211458 40211758 -187312820 + AluSx SINE Alu 1 299 -13 2030 128 0 0 chr3 40211828 40212141 -187312437 - AluSq SINE Alu 0 313 1 342 205 232 0 chr3 40212199 40212311 -187312267 + MLT1L LTR MaLR 478 615 0 31 58 0 0 chr3 40213075 40213127 -187311451 + AT_rich Low_complexity Low_complexity 1 52 0 180 0 0 0 chr3 40214249 40214269 -187310309 + (T)n Simple_repeat Simple_repeat 1 20 0 30 0 0 0 chr3 40215282 40215312 -187309266 + AT_rich Low_complexity Low_complexity 1 30 0 191 320 13 13 chr3 40216313 40216388 -187308190 + MIR3 SINE MIR 133 207 -1 609 173 169 121 chr3 40216722 40217143 -187307435 - Charlie2 DNA MER1_type -1 2861 2421 1186 163 169 49 chr3 40217172 40217411 -187307167 - Charlie2 DNA MER1_type -634 2228 1938 2113 112 0 26 chr3 40217411 40217716 -187306862 - AluSg SINE Alu -13 297 1 1186 163 169 49 chr3 40217716 40217801 -187306777 - Charlie2 DNA MER1_type -924 1938 1865 876 242 57 41 chr3 40217824 40218142 -187306436 + MER46C DNA MER2_type 1 323 -15 917 242 43 80 chr3 40218154 40218227 -187306351 - Charlie2 DNA MER1_type -2467 315 241 2007 154 126 5 chr3 40218227 40218609 -187305969 + MSTA LTR MaLR 1 428 0 917 242 43 80 chr3 40218609 40218862 -187305716 - Charlie2 DNA MER1_type -2541 241 1 848 146 0 29 chr3 40218890 40219027 -187305551 - FLAM_C SINE Alu 0 133 1 186 43 0 0 chr3 40219891 40219914 -187304664 + (A)n Simple_repeat Simple_repeat 1 23 0 2455 79 0 10 chr3 40220519 40220822 -187303756 + AluSg SINE Alu 1 300 -10 2349 106 0 3 chr3 40220902 40221205 -187303373 + AluSq SINE Alu 2 303 -10 23 78 0 0 chr3 40221265 40221316 -187303262 + AT_rich Low_complexity Low_complexity 1 51 0 280 279 15 0 chr3 40221361 40221429 -187303149 + MIR SINE MIR 6 74 -188 2010 97 12 0 chr3 40221532 40221790 -187302788 + AluSx SINE Alu 37 297 -15 23 0 0 0 chr3 40222346 40222369 -187302209 + AT_rich Low_complexity Low_complexity 1 23 0 305 236 0 56 chr3 40222845 40222934 -187301644 + L2 LINE L2 3230 3313 0 355 244 131 12 chr3 40223674 40223834 -187300744 - L2 LINE L2 -185 3087 2909 205 328 76 29 chr3 40224021 40224192 -187300386 - L2 LINE L2 -572 2742 2564 405 321 158 23 chr3 40224976 40225623 -187298955 - L2 LINE L2 -942 2372 1639 2463 199 102 31 chr3 40225982 40226599 -187297979 + L1MD2 LINE L1 5574 6234 -8 2108 110 7 32 chr3 40227441 40227750 -187296828 + AluSx SINE Alu 1 301 -11 916 141 0 15 chr3 40227832 40227967 -187296611 + FLAM_C SINE Alu 1 133 0 2632 42 7 7 chr3 40228636 40228944 -187295634 + AluY SINE Alu 3 310 -1 23 54 0 0 chr3 40229026 40229063 -187295515 + AT_rich Low_complexity Low_complexity 1 37 0 2490 81 0 0 chr3 40229110 40229407 -187295171 + AluSg SINE Alu 1 297 -13 240 225 232 14 chr3 40229720 40229862 -187294716 - MIR3 SINE MIR -17 191 19 2225 81 67 0 chr3 40230127 40230410 -187294168 - AluSc SINE Alu -7 302 1 212 324 0 54 chr3 40231444 40231518 -187293060 - L3 LINE CR1 -11 1566 1497 1890 108 41 20 chr3 40232445 40232740 -187291838 + AluSx SINE Alu 1 301 -11 247 271 114 29 chr3 40232864 40233004 -187291574 - L2 LINE L2 -290 2982 2831 208 163 0 41 chr3 40234393 40234442 -187290136 + (CCCCG)n Simple_repeat Simple_repeat 3 49 0 342 289 139 40 chr3 40234559 40234732 -187289846 - L2 LINE L2 -3 3310 3121 345 299 94 95 chr3 40234742 40235160 -187289418 - L2 LINE L2 -148 3165 2754 439 207 95 71 chr3 40235349 40235518 -187289060 - MIR SINE MIR -78 184 12 2304 81 0 0 chr3 40235970 40236266 -187288312 + AluSx SINE Alu 1 296 -16 2410 51 0 0 chr3 40236269 40236561 -187288017 + AluY SINE Alu 1 292 -19 339 207 72 18 chr3 40236595 40236706 -187287872 + L1MC4 LINE L1 7924 8040 -2 328 312 65 22 chr3 40236866 40237004 -187287574 - MER5A DNA MER1_type -2 187 44 25 31 0 0 chr3 40237436 40237468 -187287110 + AT_rich Low_complexity Low_complexity 1 32 0 1544 142 25 22 chr3 40237552 40237826 -187286752 - LTR43 LTR ERV1 0 602 328 572 77 13 0 chr3 40237828 40237906 -187286672 + MADE1 DNA Mariner 1 79 -1 * 2167 146 3 3 chr3 40237906 40238234 -187286344 - LTR43 LTR ERV1 -274 328 1 321 352 130 24 chr3 40238557 40239063 -187285515 - L2 LINE L2 -370 2944 2385 369 211 11 0 chr3 40239079 40239169 -187285409 - LTR37B LTR ERV1 0 468 378 1169 140 117 87 chr3 40239175 40239460 -187285118 + AluJb SINE Alu 14 306 0 355 234 89 44 chr3 40239910 40239971 -187284607 - LTR37B LTR ERV1 -79 389 332 360 0 0 0 chr3 40239971 40240011 -187284567 + (TG)n Simple_repeat Simple_repeat 2 41 0 355 234 89 44 chr3 40240011 40240107 -187284471 - LTR37B LTR ERV1 -136 332 225 275 302 32 8 chr3 40240177 40240303 -187284275 - LTR37B LTR ERV1 -270 198 70 1019 173 17 17 chr3 40240305 40240484 -187284094 - MER58A DNA MER1_type -1 223 45 1838 112 61 0 chr3 40240488 40240766 -187283812 + AluSq SINE Alu 1 295 -18 28 0 0 0 chr3 40240766 40240794 -187283784 + AT_rich Low_complexity Low_complexity 1 28 0 318 268 0 0 chr3 40240794 40240850 -187283728 - MER58A DNA MER1_type -168 56 1 1185 153 0 36 chr3 40240858 40241054 -187283524 - MER5A DNA MER1_type 0 189 1 244 211 123 0 chr3 40241056 40241113 -187283465 - LTR37B LTR ERV1 -394 74 11 203 340 30 0 chr3 40241121 40241221 -187283357 - L2 LINE L2 -940 2374 2272 1315 122 0 0 chr3 40241221 40241410 -187283168 + AluSx SINE Alu 1 189 -123 588 199 153 42 chr3 40242165 40242381 -187282197 - L1MC4a LINE L1 -1614 6194 5955 1440 235 84 59 chr3 40242399 40242859 -187281719 - L1MC4a LINE L1 -1903 5905 5427 2015 137 0 0 chr3 40242859 40243158 -187281420 - AluSx SINE Alu -13 299 1 1440 235 84 59 chr3 40243158 40243258 -187281320 - L1MC4a LINE L1 -2381 5427 5331 2321 77 3 3 chr3 40243258 40243558 -187281020 - AluSc SINE Alu -9 300 1 897 137 37 31 chr3 40243559 40243720 -187280858 - AluJo SINE Alu -31 281 120 5103 176 83 53 chr3 40243738 40244393 -187280185 + Charlie1a DNA MER1_type 49 683 -2078 912 143 0 0 chr3 40244393 40244526 -187280052 - FLAM_A SINE Alu 0 133 1 5103 176 83 53 chr3 40244526 40244709 -187279869 + Charlie1a DNA MER1_type 683 859 -1902 1730 132 23 26 chr3 40244709 40245019 -187279559 + AluJb SINE Alu 1 309 -3 5103 176 83 53 chr3 40245019 40245546 -187279032 + Charlie1a DNA MER1_type 859 1455 0 216 67 0 0 chr3 40245664 40245694 -187278884 + (TC)n Simple_repeat Simple_repeat 1 30 0 364 297 98 17 chr3 40246751 40246987 -187277591 + L1M4 LINE L1 3574 3828 -2318 1938 148 0 3 chr3 40246992 40247295 -187277283 - AluSx SINE Alu -10 302 1 829 176 0 0 chr3 40247478 40247609 -187276969 - FLAM_A SINE Alu -2 131 1 257 114 0 0 chr3 40248220 40248255 -187276323 - MER5A DNA MER1_type -1 188 154 796 177 71 0 chr3 40248296 40248437 -187276141 - MER5A DNA MER1_type -38 151 1 436 208 0 13 chr3 40248887 40248964 -187275614 - MER5A DNA MER1_type 0 189 114 1502 153 80 4 chr3 40249069 40249344 -187275234 - AluJb SINE Alu -16 296 1 868 202 0 11 chr3 40249471 40249649 -187274929 - FRAM SINE Alu 0 176 1 905 158 50 104 chr3 40249723 40249898 -187274680 - AluJo SINE Alu 0 312 152 2358 56 23 0 chr3 40249898 40250202 -187274376 - AluY SINE Alu 0 311 1 905 158 50 104 chr3 40250202 40250266 -187274312 - AluJo SINE Alu -160 152 86 308 336 9 9 chr3 40250267 40250380 -187274198 + L1ME3 LINE L1 5584 5696 -466 236 241 0 0 chr3 40250404 40250458 -187274120 + GA-rich Low_complexity Low_complexity 3 56 0 1171 211 70 102 chr3 40250458 40250899 -187273679 + L1ME3 LINE L1 5732 6158 -4 39 38 0 0 chr3 40251149 40251202 -187273376 + GC_rich Low_complexity Low_complexity 1 53 0 813 157 117 25 chr3 40252949 40253146 -187271432 + AluJo SINE Alu 87 301 -11 1989 120 0 7 chr3 40254046 40254345 -187270233 - AluSc SINE Alu -12 297 1 1611 152 10 30 chr3 40254352 40254649 -187269929 - AluJo SINE Alu -18 294 4 288 290 100 46 chr3 40254666 40254891 -187269687 - MIR SINE MIR -2 260 21 3346 145 48 66 chr3 40254925 40255574 -187269004 + L1MB8 LINE L1 5425 6084 -94 2004 111 0 4 chr3 40255574 40255854 -187268724 + AluSx SINE Alu 2 280 -32 192 40 0 0 chr3 40255854 40255879 -187268699 + (CAA)n Simple_repeat Simple_repeat 3 27 0 3346 145 48 66 chr3 40255879 40255974 -187268604 + L1MB8 LINE L1 6082 6157 -21 998 242 83 99 chr3 40256376 40256802 -187267776 - MER41C LTR ERV1 0 554 138 2328 71 0 3 chr3 40256802 40257097 -187267481 + AluSc SINE Alu 1 294 -15 998 242 83 99 chr3 40257097 40257233 -187267345 - MER41C LTR ERV1 -416 138 1 229 329 82 12 chr3 40257542 40257627 -187266951 - L2 LINE L2 -19 3253 3163 361 283 163 70 chr3 40257728 40258052 -187266526 - L2 LINE L2 0 3313 2932 1635 116 36 18 chr3 40258052 40258327 -187266251 + AluJb SINE Alu 1 280 -32 361 283 163 70 chr3 40258327 40258461 -187266117 - L2 LINE L2 -381 2932 2812 334 170 0 150 chr3 40258548 40258648 -187265930 + MER20B DNA MER1_type 3 87 -696 23 0 0 0 chr3 40259194 40259217 -187265361 + AT_rich Low_complexity Low_complexity 1 23 0 260 207 207 0 chr3 40259236 40259318 -187265260 - L1ME4a LINE L1 -14 6107 6009 2043 117 13 0 chr3 40259371 40259669 -187264909 - AluSx SINE Alu -10 302 1 2131 108 16 3 chr3 40259735 40260040 -187264538 - AluSc SINE Alu 0 309 1 1997 108 0 33 chr3 40261431 40261761 -187262817 - AluSx SINE Alu 0 320 1 320 64 21 0 chr3 40261881 40261928 -187262650 + (TTTTA)n Simple_repeat Simple_repeat 2 49 0 1914 103 7 14 chr3 40261930 40262212 -187262366 - AluSg SINE Alu -30 280 1 1581 167 29 20 chr3 40262555 40262861 -187261717 - AluJb SINE Alu -3 309 1 528 194 29 19 chr3 40262864 40262967 -187261611 - MIR SINE MIR -48 214 111 352 254 82 25 chr3 40263036 40263158 -187261420 - L1ME4a LINE L1 -225 5896 5768 2191 106 3 3 chr3 40263498 40263810 -187260768 - AluSx SINE Alu 0 312 1 296 298 112 56 chr3 40263812 40263990 -187260588 - MIR SINE MIR -74 188 1 1462 216 117 93 chr3 40264065 40264653 -187259925 + MLT1E1 LTR MaLR 53 654 0 465 209 95 0 chr3 40264850 40264955 -187259623 - MIR SINE MIR -54 208 94 913 168 0 17 chr3 40264957 40265130 -187259448 + FRAM SINE Alu 1 169 -7 701 285 39 25 chr3 40265442 40265723 -187258855 - L1MC4a LINE L1 -1895 5913 5629 901 206 70 75 chr3 40266018 40266428 -187258150 - LTR16A1 LTR ERVL -4 453 15 827 218 81 21 chr3 40267242 40267653 -187256925 + MLT1D LTR MaLR 1 505 0 2079 97 3 3 chr3 40268238 40268528 -187256050 - AluSc SINE Alu -17 292 3 1959 212 61 15 chr3 40268536 40269012 -187255566 - L1MC4 LINE L1 0 8042 7545 393 284 9 0 chr3 40269289 40269398 -187255180 - MIR SINE MIR -37 225 116 349 347 41 48 chr3 40269457 40269725 -187254853 + L2 LINE L2 3043 3308 -5 349 252 10 29 chr3 40270395 40270498 -187254080 - L2 LINE L2 -1 3271 3171 1843 224 130 20 chr3 40270546 40271085 -187253493 - HsTC2 DNA Tc2 -40 1858 1261 635 86 0 0 chr3 40271148 40271229 -187253349 + AluS SINE Alu 2 82 -230 249 267 40 10 chr3 40271241 40271342 -187253236 - L2 LINE L2 -253 3019 2916 2047 94 0 7 chr3 40271555 40271830 -187252748 + AluSx SINE Alu 3 275 -37 270 0 0 0 chr3 40271831 40271861 -187252717 + (CA)n Simple_repeat Simple_repeat 2 31 0 277 254 40 75 chr3 40272253 40272337 -187252241 - L1ME LINE L1 -344 5777 5701 1192 207 14 5 chr3 40272337 40272559 -187252019 + MER58A DNA MER1_type 1 224 0 277 254 40 75 chr3 40272559 40272647 -187251931 - L1ME LINE L1 -420 5701 5611 369 249 85 79 chr3 40272920 40273085 -187251493 - MLT1J2 LTR MaLR -2 448 283 982 282 78 34 chr3 40273129 40273547 -187251031 + LTR16A LTR ERVL 1 443 -7 542 276 128 10 chr3 40274103 40274306 -187250272 - MIR SINE MIR -20 242 16 341 233 9 95 chr3 40274339 40274455 -187250123 + MER5A DNA MER1_type 5 110 -79 442 74 0 0 chr3 40274465 40274542 -187250036 + Alu SINE Alu 229 305 0 430 253 30 0 chr3 40274870 40274969 -187249609 + MIR SINE MIR 83 184 -78 336 252 65 65 chr3 40275321 40275460 -187249118 + MIR3 SINE MIR 10 148 -60 1088 135 22 0 chr3 40275515 40275693 -187248885 - AluSp SINE Alu -1 312 131 2724 31 0 0 chr3 40275693 40276011 -187248567 - AluYb8 SINE Alu 0 318 1 646 164 15 8 chr3 40276305 40276439 -187248139 - L1MB7 LINE L1 0 6184 6050 5270 206 53 43 chr3 40276442 40277136 -187247442 - L1ME1 LINE L1 -54 6112 5426 1731 175 3 0 chr3 40277136 40277444 -187247134 - AluJb SINE Alu -3 309 1 5270 206 53 43 chr3 40277444 40278881 -187245697 - L1ME1 LINE L1 -740 5426 3947 216 0 0 0 chr3 40278881 40278905 -187245673 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 5270 206 53 43 chr3 40278905 40279128 -187245450 - L1ME1 LINE L1 -2219 3947 3728 587 231 12 75 chr3 40281140 40281313 -187243265 - MIR SINE MIR -2 260 99 233 333 0 0 chr3 40281840 40281909 -187242669 + L2 LINE L2 3202 3270 -2 1365 167 12 8 chr3 40282011 40282256 -187242322 - Tigger5 DNA MER2_type 0 2323 2078 453 171 0 0 chr3 40282243 40282313 -187242265 - Tigger5 DNA MER2_type -2241 82 13 * 1312 257 158 39 chr3 40283314 40283832 -187240746 - MLT1G1 LTR MaLR -15 580 1 1767 138 3 44 chr3 40283964 40284262 -187240316 - AluJb SINE Alu -17 295 10 472 244 81 0 chr3 40284355 40284488 -187240090 + MIR SINE MIR 13 155 -107 2492 87 3 0 chr3 40285188 40285497 -187239081 + AluSp SINE Alu 1 310 -3 341 288 182 33 chr3 40285712 40286195 -187238383 - L1ME4a LINE L1 -3 6118 5564 420 279 162 0 chr3 40286267 40286421 -187238157 - MIR SINE MIR -16 246 68 1003 189 31 5 chr3 40286825 40287016 -187237562 - MER3 DNA MER1_type -5 204 9 26 50 0 0 chr3 40288459 40288499 -187236079 + AT_rich Low_complexity Low_complexity 1 40 0 2044 142 10 0 chr3 40288621 40288916 -187235662 - AluSx SINE Alu -14 298 1 2434 74 3 0 chr3 40288927 40289224 -187235354 - AluY SINE Alu -13 298 1 472 236 0 71 chr3 40289232 40289372 -187235206 - L1MC5 LINE L1 -34 7927 7798 632 223 12 42 chr3 40289387 40289553 -187235025 - L1MB7 LINE L1 -9 6175 6015 486 0 0 0 chr3 40290008 40290062 -187234516 + (TG)n Simple_repeat Simple_repeat 1 54 0 398 282 111 6 chr3 40290304 40290485 -187234093 - L2 LINE L2 0 3313 3114 457 233 117 63 chr3 40290525 40290748 -187233830 + L1ME4a LINE L1 5880 6114 -7 686 161 109 23 chr3 40291014 40291188 -187233390 + MIR SINE MIR 8 196 -66 682 143 0 9 chr3 40291197 40291302 -187233276 + AluSq/x SINE Alu 2 105 -208 336 266 148 49 chr3 40291413 40291616 -187232962 + MIR SINE MIR 28 250 -12 599 292 56 5 chr3 40291903 40292119 -187232459 + MIR SINE MIR 36 262 0 2155 137 0 3 chr3 40293252 40293565 -187231013 + AluSq SINE Alu 1 312 -1 1605 161 0 45 chr3 40293647 40293933 -187230645 - AluJo SINE Alu -16 296 24 515 274 196 25 chr3 40293990 40294465 -187230113 + L1MC/D LINE L1 5100 5682 -828 2262 96 0 3 chr3 40294465 40294766 -187229812 + AluY SINE Alu 1 300 -11 515 274 196 25 chr3 40294766 40294864 -187229714 + L1MC/D LINE L1 5682 5762 -748 1087 159 48 19 chr3 40294874 40295081 -187229497 + MER20 DNA MER1_type 7 219 0 2350 99 0 0 chr3 40296658 40296952 -187227626 + AluSx SINE Alu 1 294 -18 2149 132 0 0 chr3 40296954 40297258 -187227320 + AluSc SINE Alu 1 304 -5 693 101 8 25 chr3 40297622 40297741 -187226837 - L1PA13 LINE L1 -1 6162 6046 1926 142 3 0 chr3 40298801 40299083 -187225495 - AluJo SINE Alu -16 296 14 840 184 6 50 chr3 40299190 40299369 -187225209 - MER20 DNA MER1_type -27 192 22 257 118 20 0 chr3 40299385 40299436 -187225142 + (CA)n Simple_repeat Simple_repeat 2 53 0 2102 139 3 0 chr3 40299454 40299748 -187224830 + AluSx SINE Alu 1 295 -17 1759 197 0 0 chr3 40299825 40300120 -187224458 + AluSx SINE Alu 1 295 -17 372 288 62 7 chr3 40300493 40300639 -187223939 + MIR SINE MIR 20 173 -89 319 227 15 0 chr3 40300718 40300784 -187223794 - MER116 DNA Mariner -13 67 1 2380 40 44 7 chr3 40301558 40301856 -187222722 + AluY SINE Alu 1 309 -2 5023 163 31 13 chr3 40302073 40302425 -187222153 - L1MB8 LINE L1 0 6178 5834 2027 145 0 17 chr3 40302425 40302721 -187221857 - AluJb SINE Alu -16 296 6 5023 163 31 13 chr3 40302721 40304068 -187220510 - L1MB8 LINE L1 -344 5834 4445 1051 167 0 0 chr3 40304069 40304237 -187220341 - FRAM SINE Alu -8 168 1 7536 212 51 40 chr3 40304251 40304826 -187219752 - L1MB8 LINE L1 -1717 4429 3862 1861 179 0 10 chr3 40304826 40305138 -187219440 - AluJb SINE Alu -3 309 1 7536 212 51 40 chr3 40305138 40305899 -187218679 - L1MB8 LINE L1 -2284 3862 3111 2456 157 33 19 chr3 40305899 40306320 -187218258 + MSTB1 LTR MaLR 4 430 -2 7536 212 51 40 chr3 40306320 40307241 -187217337 - L1MB8 LINE L1 -3035 3111 2146 441 278 15 8 chr3 40309151 40309284 -187215294 + MER117 DNA MER1_type 16 149 -48 219 167 0 0 chr3 40309423 40309465 -187215113 + (TA)n Simple_repeat Simple_repeat 2 43 0 462 172 115 33 chr3 40309615 40309737 -187214841 + FLAM_A SINE Alu 1 132 -1 580 275 17 50 chr3 40310705 40310945 -187213633 + MIR SINE MIR 21 252 -10 290 309 47 27 chr3 40311468 40311617 -187212961 + MIR3 SINE MIR 31 182 -26 1800 160 6 49 chr3 40312070 40312395 -187212183 - AluJb SINE Alu -1 311 1 755 204 0 0 chr3 40312485 40312617 -187211961 + FLAM_A SINE Alu 2 133 0 1145 189 87 23 chr3 40312906 40313171 -187211407 + L1MB8 LINE L1 5897 6178 0 292 283 46 13 chr3 40313214 40313366 -187211212 + HAL1 LINE L1 2272 2428 -79 211 235 24 35 chr3 40314659 40314744 -187209834 - MIR3 SINE MIR -112 96 13 232 308 83 0 chr3 40315407 40315527 -187209051 + MIR SINE MIR 19 148 -60 203 217 29 14 chr3 40316380 40316449 -187208129 + MER5A DNA MER1_type 43 112 -77 2330 93 6 13 chr3 40316670 40316982 -187207596 + AluSq SINE Alu 1 310 -3 902 88 59 15 chr3 40316991 40317127 -187207451 + L1PA11 LINE L1 6029 6170 -4 225 0 0 0 chr3 40317841 40317866 -187206712 + (A)n Simple_repeat Simple_repeat 1 25 0 2280 100 3 0 chr3 40318001 40318300 -187206278 + AluSp SINE Alu 5 304 -9 270 0 0 0 chr3 40318310 40318340 -187206238 + (T)n Simple_repeat Simple_repeat 1 30 0 553 237 141 12 chr3 40318381 40318630 -187205948 + L1M4 LINE L1 4001 4281 -1865 269 81 0 0 chr3 40318635 40318672 -187205906 + AluSx SINE Alu 1 37 -266 924 109 0 14 chr3 40318672 40318810 -187205768 - AluSg/x SINE Alu -8 304 169 2030 127 0 0 chr3 40318810 40319094 -187205484 + AluSx SINE Alu 26 309 -3 837 219 85 99 chr3 40319128 40319172 -187205406 + L1M4 LINE L1 4323 4366 -1780 2398 79 3 7 chr3 40319172 40319477 -187205101 + AluSq SINE Alu 1 304 -9 837 219 85 99 chr3 40319477 40319667 -187204911 + L1M4 LINE L1 4366 4557 -1589 2472 80 0 0 chr3 40319667 40319968 -187204610 + AluSg SINE Alu 1 301 -9 837 219 85 99 chr3 40319968 40320332 -187204246 + L1M4 LINE L1 4557 5084 -1062 1801 149 10 33 chr3 40320332 40320634 -187203944 - AluJb SINE Alu -17 295 1 837 219 85 99 chr3 40320634 40320826 -187203752 + L1M4 LINE L1 5084 5277 -869 2128 142 10 0 chr3 40320834 40321137 -187203441 + AluSx SINE Alu 1 306 -6 198 143 0 0 chr3 40321139 40321174 -187203404 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 2265 122 3 0 chr3 40321317 40321628 -187202950 - AluSx SINE Alu 0 312 1 2254 100 0 10 chr3 40323055 40323354 -187201224 + AluSc SINE Alu 1 296 -13 1104 242 132 36 chr3 40323409 40323826 -187200752 - LTR16A1 LTR ERVL 0 457 1 269 149 0 21 chr3 40324082 40324129 -187200449 + MER75 DNA T2_type 469 514 0 444 256 40 88 chr3 40324183 40324410 -187200168 + HAL1 LINE L1 1881 2096 -411 22 35 0 0 chr3 40324446 40324475 -187200103 + AT_rich Low_complexity Low_complexity 1 29 0 466 281 46 78 chr3 40324543 40324760 -187199818 + LTR33A LTR ERVL 1 210 -313 1182 169 33 19 chr3 40324847 40325060 -187199518 - MER20 DNA MER1_type 0 219 4 2293 89 6 43 chr3 40325067 40325391 -187199187 + AluSx SINE Alu 1 312 0 418 287 102 0 chr3 40325495 40325711 -187198867 + HAL1 LINE L1 2270 2507 0 2061 103 31 0 chr3 40325717 40326009 -187198569 + AluY SINE Alu 1 301 -10 417 247 19 19 chr3 40326697 40326855 -187197723 + (TA)n Simple_repeat Simple_repeat 2 159 0 2220 100 19 13 chr3 40326948 40327259 -187197319 + AluSq SINE Alu 1 313 0 339 271 98 51 chr3 40327312 40327526 -187197052 - MLT1J LTR MaLR 0 511 288 301 172 0 0 chr3 40327522 40327580 -187196998 + Alu SINE Alu 243 300 -1 * 1548 197 29 0 chr3 40327832 40328133 -187196445 + AluJo SINE Alu 1 309 0 702 209 0 0 chr3 40328133 40328248 -187196330 - AluJo/FLAM SINE Alu -184 118 4 246 217 78 39 chr3 40328261 40328374 -187196204 - MLT1J LTR MaLR -310 201 47 954 200 5 25 chr3 40328378 40328578 -187196000 + L1M4 LINE L1 16 211 -6331 2667 212 68 27 chr3 40328651 40329144 -187195434 + L1M4 LINE L1 2186 2658 -3986 272 70 23 0 chr3 40329144 40329187 -187195391 + (TTA)n Simple_repeat Simple_repeat 2 45 0 2503 62 6 3 chr3 40329187 40329508 -187195070 - L1PB1 LINE L1 -10 6141 5820 2667 212 68 27 chr3 40329508 40330015 -187194563 + L1M4 LINE L1 2657 3241 -3403 433 172 21 32 chr3 40331407 40331500 -187193078 - FLAM_A SINE Alu -16 126 35 2425 216 20 5 chr3 40331512 40332151 -187192427 + L1M4 LINE L1 3253 3901 -2743 456 339 17 0 chr3 40332529 40332703 -187191875 + L2 LINE L2 2184 2360 -954 730 202 16 0 chr3 40332726 40332855 -187191723 - FLAM_A SINE Alu -2 131 1 1401 146 0 24 chr3 40332892 40333105 -187191473 + AluJb SINE Alu 1 208 -104 2926 179 29 13 chr3 40333105 40333701 -187190877 - L1MB5 LINE L1 -217 5957 5353 654 141 0 161 chr3 40333736 40333785 -187190793 - FLAM_C SINE Alu -186 126 71 2293 76 40 3 chr3 40333785 40334086 -187190492 - AluSx SINE Alu 0 312 1 654 141 0 161 chr3 40334086 40334185 -187190393 - FLAM_C SINE Alu -241 71 2 1662 200 20 55 chr3 40334186 40334645 -187189933 - L1MB5 LINE L1 -780 5366 4924 804 134 108 13 chr3 40334801 40334958 -187189620 - L1MB8 LINE L1 0 6178 6007 6606 163 75 55 chr3 40334958 40336621 -187187957 + pTR5 LTR ERV1 743 2438 0 365 194 48 48 chr3 40336627 40336730 -187187848 - L1MB8 LINE L1 -177 6001 5899 2974 254 39 21 chr3 40336757 40337525 -187187053 - MER21B LTR ERV1 -68 795 14 414 169 0 14 chr3 40337531 40337602 -187186976 - L1MB8 LINE L1 -267 5911 5842 1779 98 4 0 chr3 40337605 40337830 -187186748 + AluSq SINE Alu 10 235 -78 672 101 0 0 chr3 40337830 40337919 -187186659 + AluY SINE Alu 194 282 -29 1201 93 0 0 chr3 40337969 40338120 -187186458 - AluSq SINE Alu -26 287 137 349 227 45 11 chr3 40338121 40338209 -187186369 + MER39 LTR ERV1 613 703 -4 1743 139 0 62 chr3 40338489 40338604 -187185974 + AluJb SINE Alu 25 146 -166 2232 110 3 3 chr3 40338604 40338905 -187185673 + AluSx SINE Alu 1 301 -11 1743 139 0 62 chr3 40338905 40339077 -187185501 + AluJb SINE Alu 146 294 -18 319 263 24 102 chr3 40339633 40339956 -187184622 + MLT1J2 LTR MaLR 116 450 0 371 274 33 26 chr3 40340518 40340671 -187183907 + HAL1b LINE L1 1187 1340 -8 2257 106 0 29 chr3 40340801 40341112 -187183466 - AluSg SINE Alu -8 302 1 645 269 42 42 chr3 40341298 40341558 -187183020 - MER102b DNA MER1_type -5 336 77 2368 88 0 3 chr3 40341565 40341859 -187182719 + AluSc SINE Alu 2 294 -15 260 194 32 0 chr3 40342228 40342290 -187182288 - MIR SINE MIR -36 226 163 3055 203 10 42 chr3 40342291 40342505 -187182073 - L1M4 LINE L1 -1055 5091 4872 2206 138 0 0 chr3 40342505 40342809 -187181769 + AluSx SINE Alu 1 304 -8 3055 203 10 42 chr3 40342809 40342915 -187181663 - L1M4 LINE L1 -1274 4872 4764 2212 82 0 34 chr3 40342915 40343231 -187181347 - AluY SINE Alu 0 306 1 3055 203 10 42 chr3 40343231 40343702 -187180876 - L1M4 LINE L1 -1382 4764 4323 324 253 137 7 chr3 40343687 40343833 -187180745 - L1M4 LINE L1 -2438 3708 3544 * 1830 151 14 0 chr3 40344057 40344335 -187180243 + AluJb SINE Alu 24 305 -7 304 285 124 29 chr3 40344638 40344775 -187179803 + MIR3 SINE MIR 36 185 -23 405 266 50 7 chr3 40344995 40345134 -187179444 + MIR SINE MIR 68 212 -50 1144 289 48 50 chr3 40345723 40346179 -187178399 - MLT1J LTR MaLR -33 478 24 492 204 232 0 chr3 40346325 40346467 -187178111 - MER5A DNA MER1_type -6 183 9 181 0 69 0 chr3 40347141 40347170 -187177408 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1458 145 40 13 chr3 40347189 40347416 -187177162 + AluSg1 SINE Alu 1 233 -76 2380 68 0 0 chr3 40347417 40347696 -187176882 + AluSq SINE Alu 19 297 -16 1827 209 36 58 chr3 40347720 40348188 -187176390 + LTR40c LTR ERVL 3 460 -5 378 239 0 11 chr3 40348205 40348293 -187176285 - MER5A DNA MER1_type -94 95 9 343 282 169 0 chr3 40348315 40348439 -187176139 + MIR3 SINE MIR 58 202 -6 601 178 20 0 chr3 40348654 40348755 -187175823 + MER94 DNA DNA 3 105 -29 1227 111 106 0 chr3 40348820 40349028 -187175550 - L1PA14 LINE L1 0 6161 5932 201 94 0 0 chr3 40349827 40349859 -187174719 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 1534 170 0 24 chr3 40349861 40350149 -187174429 - AluSx SINE Alu -31 281 1 663 266 44 18 chr3 40350161 40350390 -187174188 - L1MA9 LINE L1 -38 6274 6040 360 207 99 41 chr3 40351003 40351124 -187173454 - LTR16C LTR ERVL -2 489 362 2027 111 36 0 chr3 40351178 40351458 -187173120 - AluSx SINE Alu -22 290 1 1405 198 44 26 chr3 40351458 40351797 -187172781 - L1MB7 LINE L1 -358 5826 5482 231 247 124 0 chr3 40351798 40351895 -187172683 - HAL1 LINE L1 -2322 185 77 1031 118 0 0 chr3 40351989 40352125 -187172453 - AluSx SINE Alu -19 293 158 865 107 0 0 chr3 40352125 40352237 -187172341 - AluSx SINE Alu -201 112 1 225 0 0 0 chr3 40352618 40352643 -187171935 + (TG)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr3 40353211 40353234 -187171344 + (TA)n Simple_repeat Simple_repeat 2 24 0 1774 140 89 0 chr3 40353388 40353703 -187170875 + MER2 DNA MER2_type 1 343 -1 22 0 0 0 chr3 40353721 40353743 -187170835 + AT_rich Low_complexity Low_complexity 1 22 0 2083 91 18 4 chr3 40354180 40354456 -187170122 + AluSg SINE Alu 17 296 -14 961 217 118 23 chr3 40354523 40354869 -187169709 - L1ME3A LINE L1 -10 6160 5782 1359 207 52 65 chr3 40354894 40355085 -187169493 - MLT1D LTR MaLR 0 505 320 2527 65 0 0 chr3 40355085 40355393 -187169185 - AluY SINE Alu -3 308 1 1359 207 52 65 chr3 40355393 40355587 -187168991 - MLT1D LTR MaLR -185 320 125 7482 151 73 43 chr3 40355587 40355801 -187168777 - L1MCa LINE L1 -4828 1598 1392 2066 148 0 0 chr3 40355801 40356099 -187168479 - AluJb SINE Alu -14 298 1 7482 151 73 43 chr3 40356099 40357348 -187167230 - L1MCa LINE L1 -5034 1392 85 2399 91 0 0 chr3 40357348 40357646 -187166932 - AluSq SINE Alu -11 302 5 7482 151 73 43 chr3 40357646 40357707 -187166871 - L1MCa LINE L1 -6341 85 27 554 187 81 16 chr3 40357709 40357832 -187166746 - MLT1D LTR MaLR -374 131 1 598 232 34 39 chr3 40357832 40358039 -187166539 - L1ME3A LINE L1 -412 5750 5545 4609 175 49 1 chr3 40358040 40358925 -187165653 + L1MB7 LINE L1 5215 6141 -43 2364 94 0 0 chr3 40358926 40359223 -187165355 + AluY SINE Alu 1 297 -14 198 0 0 0 chr3 40359229 40359251 -187165327 + (TA)n Simple_repeat Simple_repeat 1 22 0 1212 139 0 60 chr3 40360012 40360227 -187164351 + AluJb SINE Alu 87 288 -24 1521 187 10 20 chr3 40360311 40360611 -187163967 - AluJb SINE Alu -13 299 3 2123 122 10 7 chr3 40360625 40360928 -187163650 - AluSx SINE Alu -8 304 1 184 309 32 43 chr3 40363020 40363114 -187161464 - MIR SINE MIR -121 141 49 561 244 102 43 chr3 40363123 40363581 -187160997 + MLT1H1 LTR MaLR 3 543 -12 408 195 80 44 chr3 40363943 40364056 -187160522 + L1ME4a LINE L1 5972 6088 -33 1468 122 0 108 chr3 40364417 40364713 -187159865 + AluJb SINE Alu 38 301 -11 2289 121 0 0 chr3 40364924 40365229 -187159349 - AluSq SINE Alu -8 305 1 362 269 88 31 chr3 40365243 40365436 -187159142 - L2 LINE L2 -5 3308 3105 612 258 72 16 chr3 40365446 40365683 -187158895 + MLT1G1 LTR MaLR 3 213 -377 646 210 8 0 chr3 40365692 40365811 -187158767 + FLAM_C SINE Alu 1 120 -13 1302 244 45 6 chr3 40365812 40366148 -187158430 + L1ME3 LINE L1 5784 6132 -30 2307 98 0 3 chr3 40366355 40366660 -187157918 - AluY SINE Alu -7 304 1 1831 164 3 3 chr3 40366662 40366955 -187157623 - AluSx SINE Alu -13 299 7 760 124 0 0 chr3 40366957 40367062 -187157516 - AluJo SINE Alu -173 139 35 313 188 71 24 chr3 40367389 40367474 -187157104 + MLT1J LTR MaLR 416 504 -7 427 276 43 22 chr3 40367564 40367749 -187156829 - L1MEc LINE L1 -5353 1043 855 225 361 24 0 chr3 40367900 40367983 -187156595 - LTR16C LTR ERVL -358 133 49 2482 64 7 0 chr3 40368093 40368390 -187156188 + AluSp SINE Alu 1 299 -14 295 275 18 28 chr3 40368784 40368893 -187155685 + MIR3 SINE MIR 96 203 -5 292 265 148 75 chr3 40369015 40369268 -187155310 + L1ME4a LINE L1 5608 5841 -280 2032 128 3 31 chr3 40369268 40369589 -187154989 + AluSq SINE Alu 1 312 -1 292 265 148 75 chr3 40369589 40369814 -187154764 + L1ME4a LINE L1 5841 6121 0 599 305 85 27 chr3 40370392 40370615 -187153963 + LTR16C LTR ERVL 89 324 -167 1542 153 32 62 chr3 40370615 40370923 -187153655 + AluJo SINE Alu 1 299 -13 270 310 20 41 chr3 40371579 40371776 -187152802 + L1ME3 LINE L1 4243 4435 -1711 418 298 28 33 chr3 40371786 40372001 -187152577 + L1ME3 LINE L1 5735 5948 -214 1858 151 7 0 chr3 40372299 40372573 -187152005 + AluJb SINE Alu 5 283 -29 204 40 0 0 chr3 40372573 40372598 -187151980 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 212 214 0 0 chr3 40372829 40372871 -187151707 + MIR3 SINE MIR 156 197 -11 24 32 0 0 chr3 40373328 40373359 -187151219 + AT_rich Low_complexity Low_complexity 1 31 0 2130 97 36 0 chr3 40373360 40373639 -187150939 - AluSg SINE Alu -21 289 1 850 206 60 14 chr3 40373639 40373857 -187150721 + L1MC5 LINE L1 7698 7925 -36 315 0 0 0 chr3 40374179 40374214 -187150364 + (CA)n Simple_repeat Simple_repeat 2 36 0 2263 89 0 10 chr3 40374216 40374507 -187150071 - AluSx SINE Alu -24 288 1 213 244 0 0 chr3 40374514 40374555 -187150023 - L2 LINE L2 -17 3296 3256 335 252 101 8 chr3 40374747 40374816 -187149762 + MER5A DNA MER1_type 45 106 -83 1858 151 22 26 chr3 40374816 40375127 -187149451 - AluSx SINE Alu -2 310 1 335 252 101 8 chr3 40375127 40375176 -187149402 + MER5A DNA MER1_type 106 174 -15 235 235 71 12 chr3 40375324 40375409 -187149169 - MIR SINE MIR -124 138 49 2319 99 0 0 chr3 40375563 40375855 -187148723 + AluSq SINE Alu 1 292 -21 356 177 20 7 chr3 40375871 40376018 -187148560 + (TA)n Simple_repeat Simple_repeat 2 150 0 1855 167 3 6 chr3 40377263 40377574 -187147004 + AluSq SINE Alu 4 313 0 1734 185 3 0 chr3 40377691 40377983 -187146595 - AluSx SINE Alu -17 295 3 4482 133 64 50 chr3 40378066 40379335 -187145243 - pTR5 LTR ERV1 -125 2212 6 241 313 0 48 chr3 40379625 40379708 -187144870 + L3 LINE CR1 1480 1558 -19 1511 166 6 113 chr3 40380494 40380613 -187143965 + AluJo SINE Alu 1 131 -171 262 0 53 0 chr3 40380613 40380651 -187143927 + (CAAAA)n Simple_repeat Simple_repeat 1 40 0 1511 166 6 113 chr3 40380651 40380857 -187143721 + AluJo SINE Alu 131 291 -11 806 218 0 6 chr3 40380859 40381015 -187143563 + FRAM SINE Alu 1 154 -22 206 238 0 0 chr3 40381097 40381139 -187143439 + (CA)n Simple_repeat Simple_repeat 2 43 0 4261 256 66 38 chr3 40381189 40382711 -187141867 - L2 LINE L2 0 3313 1734 1915 123 39 0 chr3 40382711 40382995 -187141583 + AluSx SINE Alu 1 295 -17 4261 256 66 38 chr3 40382995 40383303 -187141275 - L2 LINE L2 -1579 1734 1436 777 237 19 14 chr3 40383303 40383518 -187141060 + HAL1 LINE L1 1431 1646 -861 791 224 141 9 chr3 40383525 40383941 -187140637 + LTR33 LTR ERVL 1 521 0 250 257 43 14 chr3 40383943 40384013 -187140565 + HAL1 LINE L1 1652 1723 -784 726 271 101 49 chr3 40384016 40384254 -187140324 + HAL1 LINE L1 1775 2036 -471 2430 96 0 0 chr3 40384254 40384566 -187140012 + AluSx SINE Alu 1 312 0 726 271 101 49 chr3 40384566 40384655 -187139923 + HAL1 LINE L1 2036 2119 -388 186 238 0 0 chr3 40384881 40384923 -187139655 + MIR SINE MIR 81 122 -140 214 114 29 0 chr3 40384952 40384987 -187139591 + L2 LINE L2 3219 3254 -18 554 172 6 0 chr3 40585277 40585384 -186939194 + L1M4 LINE L1 2357 2506 -3941 229 204 0 0 chr3 40585558 40585602 -186938976 + AluJ/monomer SINE Alu 1 44 -256 262 308 47 35 chr3 40585739 40585908 -186938670 + MARNA DNA Mariner 254 424 -162 875 167 0 0 chr3 40586064 40586196 -186938382 + FLAM_C SINE Alu 1 132 -1 668 276 83 48 chr3 40586905 40587267 -186937311 - HAL1 LINE L1 -359 2148 1800 1906 139 41 3 chr3 40587267 40587561 -186937017 - AluSx SINE Alu -7 305 1 668 276 83 48 chr3 40587561 40587649 -186936929 - HAL1 LINE L1 -707 1800 1677 1734 187 17 0 chr3 40587649 40587948 -186936630 + AluJb SINE Alu 1 304 -8 668 276 83 48 chr3 40587948 40587978 -186936600 - HAL1 LINE L1 -830 1677 1650 1886 223 94 22 chr3 40587991 40588574 -186936004 + L1M4 LINE L1 2890 3514 -2868 270 211 39 0 chr3 40588574 40588626 -186935952 + AluSg/x SINE Alu 117 170 -132 1379 193 64 24 chr3 40588628 40588924 -186935654 + AluJo SINE Alu 3 310 -2 2242 115 7 0 chr3 40589089 40589394 -186935184 + AluY SINE Alu 1 307 -4 2203 197 33 42 chr3 40589483 40589608 -186934970 + L1M4 LINE L1 3616 3741 -2641 1927 154 43 0 chr3 40589608 40589907 -186934671 + AluJb SINE Alu 1 312 0 2203 197 33 42 chr3 40589907 40590197 -186934381 + L1M4 LINE L1 3741 4027 -2355 2069 146 27 43 chr3 40590197 40590567 -186934011 - THE1B LTR MaLR 0 364 1 2203 197 33 42 chr3 40590567 40590694 -186933884 + L1M4 LINE L1 4027 4154 -2228 524 224 61 14 chr3 40590693 40590840 -186933738 + L1M4 LINE L1 5265 5418 -964 * 303 226 48 0 chr3 40590984 40591068 -186933510 + HAL1 LINE L1 2237 2324 -183 1856 143 56 0 chr3 40591765 40592051 -186932527 - AluSx SINE Alu -10 302 1 253 213 53 27 chr3 40592142 40592217 -186932361 - L1ME LINE L1 -311 5810 5734 200 211 0 0 chr3 40593497 40593535 -186931043 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 226 189 38 0 chr3 40594015 40594068 -186930510 + MER116 DNA Mariner 26 80 0 2104 133 0 0 chr3 40594303 40594597 -186929981 - AluSx SINE Alu -18 294 1 214 223 25 50 chr3 40594983 40595104 -186929474 + (TTATA)n Simple_repeat Simple_repeat 2 119 0 30 43 0 43 chr3 40595158 40595228 -186929350 + AT_rich Low_complexity Low_complexity 1 67 0 235 191 48 12 chr3 40595316 40595400 -186929178 + (TA)n Simple_repeat Simple_repeat 1 87 0 2030 126 0 0 chr3 40595507 40595784 -186928794 - AluSx SINE Alu -35 277 1 686 86 86 9 chr3 40595827 40595943 -186928635 - L1MA8 LINE L1 -52 6239 6115 1208 206 54 7 chr3 40595962 40596238 -186928340 - L1MA9 LINE L1 -35 6277 5989 498 16 0 16 chr3 40596235 40596297 -186928281 - L1MA8 LINE L1 -160 6131 6071 * 5294 112 23 0 chr3 40596692 40597594 -186926984 + L1PA12 LINE L1 5117 6033 -135 2211 116 7 0 chr3 40598418 40598721 -186925857 + AluSx SINE Alu 1 305 -7 346 325 34 10 chr3 40599182 40599331 -186925247 - MER20B DNA MER1_type 0 219 63 603 207 27 9 chr3 40600032 40600143 -186924435 - FRAM SINE Alu -66 110 1 21 57 0 0 chr3 40600216 40600251 -186924327 + AT_rich Low_complexity Low_complexity 1 35 0 1349 190 63 114 chr3 40600428 40600918 -186923660 + MER4C LTR ERV1 1 465 0 1798 139 4 0 chr3 40601241 40601545 -186923033 + AluSx SINE Alu 26 330 0 467 163 0 23 chr3 40601545 40601631 -186922947 + L1M1 LINE L1 2844 2927 -4638 6452 91 24 79 chr3 40601636 40603040 -186921538 - SVA Other Other -555 1386 431 300 317 119 20 chr3 40603515 40603717 -186920861 - MER57A LTR ERV1 -175 228 7 1624 167 21 14 chr3 40603774 40604056 -186920522 - AluSx SINE Alu -28 284 1 2478 69 0 0 chr3 40604060 40604363 -186920215 - AluY SINE Alu -8 303 1 253 119 0 0 chr3 40604376 40604418 -186920160 - MER65B LTR ERV1 -487 44 3 2435 224 55 24 chr3 40604420 40605036 -186919542 - MER65B-int LTR ERV1 0 4871 4237 415 178 10 59 chr3 40605036 40605137 -186919441 - MER65B-int LTR ERV1 -739 4132 4037 21 0 0 0 chr3 40605424 40605445 -186919133 + GC_rich Low_complexity Low_complexity 1 21 0 282 191 170 11 chr3 40606210 40606304 -186918274 + MER103 DNA DNA 57 165 -1 1031 184 237 15 chr3 40607905 40608150 -186916428 + L1MEc LINE L1 1841 2030 -4366 2119 137 0 9 chr3 40608150 40608465 -186916113 + AluSx SINE Alu 1 312 0 1031 184 237 15 chr3 40608465 40608616 -186915962 + L1MEc LINE L1 2030 2325 -4071 2211 120 0 0 chr3 40608616 40608916 -186915662 + AluSg SINE Alu 1 300 -10 1236 171 5 5 chr3 40609471 40609681 -186914897 - AluJb SINE Alu -20 292 83 2844 74 3 14 chr3 40609900 40610264 -186914314 - L1PB1 LINE L1 0 6151 5792 913 100 0 105 chr3 40610318 40610547 -186914031 - L1PB1 LINE L1 -359 5792 5588 269 208 13 39 chr3 40610842 40610919 -186913659 + CT-rich Low_complexity Low_complexity 3 77 0 604 324 66 0 chr3 40611420 40611633 -186912945 - MIR SINE MIR -14 248 22 1025 254 35 23 chr3 40611694 40612041 -186912537 + L1ME4a LINE L1 5519 5869 -252 945 182 20 15 chr3 40612450 40612648 -186911930 + L1MB8 LINE L1 5980 6178 0 226 369 70 25 chr3 40612870 40613027 -186911551 + L2 LINE L2 3107 3270 -2 2764 236 38 31 chr3 40613158 40614085 -186910493 + L1M4 LINE L1 2574 3506 -2640 374 268 62 0 chr3 40614088 40614200 -186910378 + AluSq/x SINE Alu 1 119 -184 5130 148 14 124 chr3 40614383 40614938 -186909640 + L1M2 LINE L1 1037 1464 -5385 624 118 0 0 chr3 40614938 40615023 -186909555 + AluY SINE Alu 213 297 -14 5130 148 14 124 chr3 40615023 40615668 -186908910 + L1M2 LINE L1 1464 2179 -4670 1407 176 60 89 chr3 40615802 40616096 -186908482 + MER58B DNA MER1_type 5 289 -2131 860 214 7 0 chr3 40616096 40616250 -186908328 - FRAM SINE Alu -11 155 1 1407 176 60 89 chr3 40616250 40616302 -186908276 + MER58B DNA MER1_type 289 341 0 211 384 29 43 chr3 40616317 40616455 -186908123 - MIR3 SINE MIR -72 136 1 569 288 47 41 chr3 40617690 40618034 -186906544 - L1M4 LINE L1 -2190 3956 3611 1205 272 91 35 chr3 40618046 40618506 -186906072 - MLT1J LTR MaLR -22 489 4 249 179 90 51 chr3 40618532 40618610 -186905968 - MIR SINE MIR -153 109 29 1076 196 10 5 chr3 40619116 40619315 -186905263 + AluJo SINE Alu 89 288 -24 701 172 75 0 chr3 40619439 40619573 -186905005 - MER5A DNA MER1_type -44 145 2 206 354 6 31 chr3 40619928 40620089 -186904489 + CT-rich Low_complexity Low_complexity 3 159 0 191 288 144 30 chr3 40620354 40620486 -186904092 + L2 LINE L2 3165 3311 -2 810 240 15 10 chr3 40620991 40621187 -186903391 + MIR SINE MIR 60 256 -6 304 77 39 0 chr3 40621658 40621710 -186902868 + CT-rich Low_complexity Low_complexity 4 57 0 1654 192 3 19 chr3 40621712 40622029 -186902549 - AluJb SINE Alu 0 312 1 240 388 0 0 chr3 40622029 40622109 -186902469 + L2 LINE L2 2590 2669 -645 391 237 82 0 chr3 40622134 40622231 -186902347 + MIR SINE MIR 13 117 -145 234 311 107 51 chr3 40622319 40622496 -186902082 + L2 LINE L2 2842 3028 -244 264 314 48 24 chr3 40622529 40622653 -186901925 - MER91A DNA MER1_type -25 171 45 195 42 0 0 chr3 40623770 40623794 -186900784 + (CTCA)n Simple_repeat Simple_repeat 4 27 0 969 156 17 22 chr3 40624830 40625009 -186899569 - AluSg/x SINE Alu -14 298 121 239 229 7 91 chr3 40625009 40625212 -186899366 - AluJb SINE Alu -83 219 121 24 0 0 0 chr3 40625327 40625351 -186899227 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 40626323 40626351 -186898227 + AT_rich Low_complexity Low_complexity 1 28 0 1201 90 6 6 chr3 40626667 40626823 -186897755 + L1PA12 LINE L1 5995 6150 -18 1907 95 0 0 chr3 40626850 40627102 -186897476 - L1P4 LINE L1 -362 5812 5561 1889 134 4 4 chr3 40627105 40627380 -186897198 + AluSx SINE Alu 17 291 -21 506 335 86 34 chr3 40627915 40628240 -186896338 + L2 LINE L2 2475 2816 -498 407 282 129 18 chr3 40628244 40628414 -186896164 - MIR SINE MIR -67 195 7 443 306 48 121 chr3 40628420 40628874 -186895704 + L2 LINE L2 2851 3271 -1 365 219 113 42 chr3 40630648 40630798 -186893780 - MIR SINE MIR -60 202 44 698 198 24 8 chr3 40632528 40632654 -186891924 + MER2 DNA MER2_type 218 345 0 343 248 120 0 chr3 40632654 40632771 -186891807 - L1ME4a LINE L1 -24 6097 5967 748 118 92 33 chr3 40632798 40632950 -186891628 + L1PA5 LINE L1 5994 6154 0 218 250 18 18 chr3 40633404 40633460 -186891118 + L3 LINE CR1 1520 1575 -2 4771 124 12 12 chr3 40633813 40634552 -186890026 - L1MA3 LINE L1 -284 6021 5283 289 232 49 0 chr3 40635523 40635605 -186888973 + MLT1K LTR MaLR 148 233 -355 263 295 248 0 chr3 40635668 40635773 -186888805 - L2 LINE L2 0 3272 3142 556 178 28 9 chr3 40636375 40636482 -186888096 + AluSg/x SINE Alu 164 272 -40 281 24 49 0 chr3 40636493 40636534 -186888044 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 863 209 14 33 chr3 40637433 40637648 -186886930 + L1MA5A LINE L1 4791 5001 -1145 3112 113 10 48 chr3 40637655 40637734 -186886844 - L1PA16 LINE L1 -162 6004 5924 1943 106 85 21 chr3 40637734 40638016 -186886562 - AluSx SINE Alu -8 304 5 3112 113 10 48 chr3 40638016 40638440 -186886138 - L1PA16 LINE L1 -242 5924 5520 5068 120 12 25 chr3 40638440 40639215 -186885363 + L1MA5A LINE L1 5519 6283 -14 929 179 4 16 chr3 40639215 40639444 -186885134 - AluJb SINE Alu -17 295 3 606 164 46 59 chr3 40639481 40639633 -186884945 - MER65A-int LTR ERV1 -3225 3373 3224 * 4090 190 108 46 chr3 40639621 40640125 -186884453 - MER65A-int LTR ERV1 -3544 1327 855 2133 140 0 10 chr3 40640125 40640425 -186884153 + AluSq SINE Alu 3 301 -12 273 29 0 0 chr3 40640425 40640459 -186884119 + (TA)n Simple_repeat Simple_repeat 2 35 0 2133 140 0 10 chr3 40640459 40640472 -186884106 + AluSq SINE Alu 301 313 0 4090 190 108 46 chr3 40640472 40641110 -186883468 - MER65A-int LTR ERV1 -4016 855 115 2407 123 90 43 chr3 40641198 40641334 -186883244 - MER65A LTR ERV1 -2 443 315 2039 116 3 53 chr3 40641334 40641653 -186882925 - AluSx SINE Alu -9 303 1 2407 123 90 43 chr3 40641653 40641939 -186882639 - MER65A LTR ERV1 -130 315 1 411 134 62 103 chr3 40641940 40642037 -186882541 - L1MB7 LINE L1 -273 5911 5819 3217 70 6 70 chr3 40642037 40642510 -186882068 - L1PA6 LINE L1 -5 6149 5707 755 165 12 75 chr3 40642543 40642660 -186881918 - L1MB7 LINE L1 -447 5715 5618 2149 88 0 59 chr3 40642660 40642965 -186881613 - AluSc SINE Alu -22 287 1 755 165 12 75 chr3 40642965 40643027 -186881551 - L1MB7 LINE L1 -544 5618 5554 1515 193 115 46 chr3 40643135 40643508 -186881070 - MLT1D LTR MaLR -106 399 1 598 315 45 25 chr3 40643508 40643616 -186880962 + L2 LINE L2 2998 3102 -211 2471 78 0 7 chr3 40643616 40643925 -186880653 + AluSq SINE Alu 1 307 -6 598 315 45 25 chr3 40643925 40644102 -186880476 + L2 LINE L2 3102 3289 -24 413 285 73 55 chr3 40644464 40644629 -186879949 - MER5A DNA MER1_type -1 188 21 2524 106 39 28 chr3 40644974 40645334 -186879244 - THE1B LTR MaLR 0 364 1 2467 85 0 0 chr3 40645781 40646086 -186878492 - AluSx SINE Alu -7 305 1 1997 136 0 19 chr3 40646089 40646399 -186878179 - AluSx SINE Alu -8 304 1 453 262 286 16 chr3 40646399 40646773 -186877805 - HAL1 LINE L1 -225 2282 1808 527 299 50 70 chr3 40647244 40647485 -186877093 + MIR SINE MIR 1 236 -26 2349 70 31 0 chr3 40647602 40647889 -186876689 - AluSx SINE Alu -12 300 5 270 333 11 0 chr3 40647938 40648025 -186876553 - L2 LINE L2 -4 3309 3222 2584 156 8 34 chr3 40648045 40648356 -186876222 + L1MB2 LINE L1 5707 6003 -168 2284 108 0 0 chr3 40648356 40648653 -186875925 - AluSg SINE Alu -13 297 1 2584 156 8 34 chr3 40648653 40648817 -186875761 + L1MB2 LINE L1 6003 6170 -1 384 336 123 5 chr3 40648983 40649194 -186875384 - MIR SINE MIR -23 239 4 853 113 49 21 chr3 40649659 40649801 -186874777 - FRAM SINE Alu -11 165 20 1985 148 0 3 chr3 40649808 40650105 -186874473 - AluSx SINE Alu -16 296 1 1014 175 27 0 chr3 40650202 40650385 -186874193 - L1MB3 LINE L1 -34 6149 5962 617 144 0 0 chr3 40650385 40650475 -186874103 - 5S rRNA rRNA -31 90 1 368 187 0 13 chr3 40650475 40650550 -186874028 - L1MB3 LINE L1 -197 5974 5901 1342 182 10 76 chr3 40650930 40651232 -186873346 + AluJo SINE Alu 1 282 -30 1316 206 0 0 chr3 40651319 40651538 -186873040 - MER20 DNA MER1_type 0 219 1 191 261 65 0 chr3 40651969 40652015 -186872563 + L2 LINE L2 3223 3271 -1 875 162 0 22 chr3 40652419 40652555 -186872023 - FLAM_A SINE Alu 0 133 1 2184 107 21 0 chr3 40653299 40653589 -186870989 + AluSx SINE Alu 1 296 -16 1538 237 79 8 chr3 40653598 40653953 -186870625 - MER61C-int LTR ERV1 -887 3984 3605 357 200 371 16 chr3 40653941 40654101 -186870477 - MER61C-int LTR ERV1 -847 4089 3363 * 2786 200 66 113 chr3 40654102 40654210 -186870368 - MER61C-int LTR ERV1 -1114 4022 3911 1805 152 0 42 chr3 40654210 40654520 -186870058 + AluJb SINE Alu 3 299 -13 2786 200 66 113 chr3 40654520 40654590 -186869988 - MER61C-int LTR ERV1 -1225 3911 3839 2136 140 0 0 chr3 40654590 40654897 -186869681 + AluSx SINE Alu 1 307 -5 2786 200 66 113 chr3 40654897 40654991 -186869587 - MER61C-int LTR ERV1 -1297 3839 3742 1629 190 0 31 chr3 40654991 40655312 -186869266 + AluJo SINE Alu 1 311 -1 2786 200 66 113 chr3 40655312 40656569 -186868009 - MER61C-int LTR ERV1 -1394 3742 2492 774 157 25 69 chr3 40656647 40656851 -186867727 - MER61C-int LTR ERV1 -2868 3730 3536 262 184 0 0 chr3 40656926 40656975 -186867603 - MER61C-int LTR ERV1 -4281 2477 2429 2328 87 7 0 chr3 40657200 40657499 -186867079 + AluSg SINE Alu 1 301 -9 2432 64 3 13 chr3 40657499 40657811 -186866767 + AluY SINE Alu 1 309 -2 1858 144 3 10 chr3 40657875 40658166 -186866412 + AluSg SINE Alu 5 293 -17 998 162 0 115 chr3 40658205 40658266 -186866312 + AluJo SINE Alu 87 153 -159 2262 107 0 10 chr3 40658266 40658576 -186866002 + AluSg1 SINE Alu 1 307 -2 998 162 0 115 chr3 40658576 40658749 -186865829 + AluJo SINE Alu 153 294 -18 618 108 25 33 chr3 40658749 40658869 -186865709 + L1 LINE L1 4538 4656 -1490 2252 114 0 0 chr3 40658869 40659167 -186865411 + AluSc SINE Alu 1 298 -11 1012 202 5 28 chr3 40659168 40659386 -186865192 + L1 LINE L1 4789 5001 -1145 383 203 0 0 chr3 40659393 40659462 -186865116 - L1PA16 LINE L1 -162 6004 5936 307 278 156 0 chr3 40659895 40659985 -186864593 - L2 LINE L2 -2 3311 3208 571 330 112 4 chr3 40660180 40660413 -186864165 - L2 LINE L2 -225 3088 2831 2370 64 3 7 chr3 40660425 40660720 -186863858 - AluY SINE Alu -17 294 1 866 246 138 40 chr3 40660750 40661128 -186863450 - MER50 LTR ERV1 -298 436 22 2035 183 57 5 chr3 40661134 40661517 -186863061 - MER61C LTR ERV1 0 434 32 11293 173 53 46 chr3 40661518 40662623 -186861955 - MER61C-int LTR ERV1 -917 5029 3933 2226 113 13 0 chr3 40662623 40662924 -186861654 - AluSg SINE Alu -5 305 1 2193 123 0 0 chr3 40662929 40663230 -186861348 - AluSx SINE Alu -9 303 3 11293 173 53 46 chr3 40663230 40664254 -186860324 - MER61C-int LTR ERV1 -2016 3930 2915 2400 53 0 7 chr3 40664254 40664568 -186860010 - AluY SINE Alu 0 312 1 11293 173 53 46 chr3 40664568 40664580 -186859998 - MER61C-int LTR ERV1 -3031 2915 2905 2369 103 0 3 chr3 40664580 40664892 -186859686 - AluY SINE Alu 0 311 1 11293 173 53 46 chr3 40664892 40664927 -186859651 - MER61C-int LTR ERV1 -3041 2905 2872 2262 129 0 0 chr3 40664927 40665237 -186859341 - AluSq SINE Alu -3 310 1 11293 173 53 46 chr3 40665237 40665758 -186858820 - MER61C-int LTR ERV1 -3074 2872 1407 2800 110 15 7 chr3 40665771 40666181 -186858397 + MER4E LTR ERV1 1 413 -366 1869 127 6 62 chr3 40666189 40666313 -186858265 - AluSq SINE Alu -7 306 177 1368 153 103 121 chr3 40666313 40666769 -186857809 - LTR7 LTR ERV1 -2 448 1 1869 127 6 62 chr3 40666769 40666968 -186857610 - AluSq SINE Alu -136 177 1 2199 92 3 10 chr3 40667010 40667305 -186857273 - AluSx SINE Alu -8 304 12 2471 95 9 3 chr3 40667305 40667643 -186856935 + MER4E LTR ERV1 427 766 0 2222 152 0 0 chr3 40667654 40667990 -186856588 - MER61C-int LTR ERV1 -4984 2553 2218 * 4810 165 31 32 chr3 40667967 40669234 -186855344 - MER61C-int LTR ERV1 -382 4835 3567 425 197 0 0 chr3 40669234 40669310 -186855268 - MADE1 DNA Mariner 0 80 5 4810 165 31 32 chr3 40669310 40669447 -186855131 - MER61C-int LTR ERV1 -1650 3567 3431 1992 154 0 10 chr3 40669447 40669740 -186854838 - AluSx SINE Alu -22 290 1 4810 165 31 32 chr3 40669740 40669906 -186854672 - MER61C-int LTR ERV1 -1786 3431 183 288 232 134 0 chr3 40669941 40670023 -186854555 - MER61C-int LTR ERV1 -6593 498 406 * 508 257 16 21 chr3 40670015 40670175 -186854403 - MER61C-int LTR ERV1 -6837 254 18 2187 163 24 29 chr3 40670191 40670320 -186854258 - MER61C LTR ERV1 0 434 306 2170 107 7 0 chr3 40670320 40670610 -186853968 + AluSp SINE Alu 1 292 -21 2187 163 24 29 chr3 40670610 40670932 -186853646 - MER61C LTR ERV1 -128 306 1 1827 203 65 3 chr3 40670946 40671315 -186853263 + LTR39 LTR ERV1 392 783 0 1471 247 14 3 chr3 40671319 40671615 -186852963 - MER57A-int LTR ERV1 -7238 299 1 2050 196 66 0 chr3 40671615 40671993 -186852585 - MER57A LTR ERV1 0 403 1 2051 101 3 14 chr3 40672009 40672331 -186852247 - AluSx SINE Alu 0 319 1 272 293 111 95 chr3 40672346 40672625 -186851953 + HAL1 LINE L1 1275 1548 -959 2113 134 7 3 chr3 40672625 40672930 -186851648 - AluSx SINE Alu -6 306 1 1655 177 10 33 chr3 40672937 40673236 -186851342 - AluJo SINE Alu -20 292 1 272 293 111 95 chr3 40673236 40673337 -186851241 + HAL1 LINE L1 1553 1669 -838 381 213 75 44 chr3 40673635 40673859 -186850719 - L1MB7 LINE L1 -16 6168 5909 980 74 40 124 chr3 40673859 40674002 -186850576 - MER65A LTR ERV1 0 445 322 2302 83 3 0 chr3 40674002 40674292 -186850286 + AluSq SINE Alu 2 292 -21 980 74 40 124 chr3 40674292 40674350 -186850228 - MER65A LTR ERV1 -123 322 261 1420 241 164 25 chr3 40674508 40675376 -186849202 + L2 LINE L2 2247 3298 -15 215 262 49 0 chr3 40675380 40675441 -186849137 + MIR SINE MIR 195 258 -4 316 286 44 24 chr3 40676719 40676856 -186847722 + MIR SINE MIR 30 167 -62 1499 175 20 44 chr3 40676932 40677229 -186847349 - AluJo SINE Alu -22 290 1 2116 106 10 14 chr3 40677494 40677786 -186846792 + AluSx SINE Alu 1 291 -21 235 283 62 18 chr3 40677796 40677909 -186846669 - L1ME LINE L1 -457 5664 5547 31 44 0 0 chr3 40677999 40678044 -186846534 + AT_rich Low_complexity Low_complexity 1 45 0 523 237 37 7 chr3 40678522 40678657 -186845921 - L1MC4 LINE L1 -139 7903 7765 731 239 12 12 chr3 40678659 40678826 -186845752 + FAM SINE Alu 1 48 -1 330 202 48 29 chr3 40678844 40678948 -186845630 - L1MC4 LINE L1 -243 7799 7694 5014 158 20 24 chr3 40678954 40679706 -186844872 - L1MB3 LINE L1 0 6183 5437 2281 113 3 0 chr3 40679706 40680015 -186844563 - AluSp SINE Alu -3 310 1 5014 158 20 24 chr3 40680015 40680348 -186844230 - L1MB3 LINE L1 -746 5437 5104 1820 183 23 13 chr3 40680348 40680742 -186843836 - L1MB3 LINE L1 -1323 4823 4426 3096 163 49 33 chr3 40680752 40681010 -186843568 + Tigger3b DNA MER2_type 1 253 -2775 1540 207 18 4 chr3 40681010 40681317 -186843261 - AluJo SINE Alu 0 311 1 3096 163 49 33 chr3 40681317 40681497 -186843081 + Tigger3b DNA MER2_type 253 429 -2599 2767 22 10 0 chr3 40681497 40681809 -186842769 - AluYb8 SINE Alu -3 315 1 3096 163 49 33 chr3 40681809 40681976 -186842602 + Tigger3b DNA MER2_type 429 618 -613 11849 176 11 44 chr3 40681985 40682719 -186841859 - L1P LINE L1 -1303 4843 4086 2179 139 0 0 chr3 40682719 40683029 -186841549 - AluSx SINE Alu -2 310 1 11849 176 11 44 chr3 40683029 40683514 -186841064 - L1P LINE L1 -2060 4086 3587 1983 119 7 17 chr3 40683514 40683808 -186840770 - AluSx SINE Alu 0 312 22 11849 176 11 44 chr3 40683808 40685112 -186839466 - L1P LINE L1 -2559 3587 2402 243 0 0 0 chr3 40685356 40685383 -186839195 + (A)n Simple_repeat Simple_repeat 1 27 0 2762 216 28 94 chr3 40685424 40685621 -186838957 + MER57A-int LTR ERV1 6127 6335 -1202 2102 130 0 3 chr3 40685621 40685913 -186838665 + AluSc SINE Alu 1 291 -18 2762 216 28 94 chr3 40685913 40686132 -186838446 + MER57A-int LTR ERV1 6335 6567 -970 1984 116 12 50 chr3 40686132 40686452 -186838126 + AluSg SINE Alu 1 308 -2 2762 216 28 94 chr3 40686452 40686464 -186838114 + MER57A-int LTR ERV1 6567 6578 -959 2310 86 0 23 chr3 40686464 40686766 -186837812 + AluSq SINE Alu 1 295 -18 2421 87 0 3 chr3 40686766 40687078 -186837500 + AluY SINE Alu 1 311 0 2762 216 28 94 chr3 40687078 40687539 -186837039 + MER57A-int LTR ERV1 6576 6960 -577 1012 181 17 73 chr3 40687552 40687784 -186836794 + MER57A-int LTR ERV1 7318 7536 -1 2145 146 92 5 chr3 40687786 40688157 -186836421 + MER57A LTR ERV1 1 403 0 1480 160 20 50 chr3 40688221 40688390 -186836188 - AluJo SINE Alu -21 291 133 2340 87 0 0 chr3 40688390 40688679 -186835899 + AluY SINE Alu 1 289 -22 1480 160 20 50 chr3 40688679 40688809 -186835769 - AluJo SINE Alu -179 133 1 1536 182 9 46 chr3 40688854 40689178 -186835400 - AluJo SINE Alu 0 312 1 221 302 17 60 chr3 40689514 40689630 -186834948 + MIR SINE MIR 36 146 -62 1354 98 31 5 chr3 40689733 40689927 -186834651 - AluSx SINE Alu -100 212 14 352 276 82 112 chr3 40690994 40691748 -186832830 - L1M2 LINE L1 -5599 1250 509 233 227 27 13 chr3 40692473 40692548 -186832030 - L1MB8 LINE L1 0 6178 6103 636 158 126 24 chr3 40694064 40694191 -186830387 + FAM SINE Alu 20 159 -26 200 200 0 71 chr3 40694303 40694388 -186830190 + T-rich Low_complexity Low_complexity 4 82 0 187 250 0 133 chr3 40694491 40694611 -186829967 - MIR3 SINE MIR -13 195 92 24 53 0 0 chr3 40694898 40694936 -186829642 + AT_rich Low_complexity Low_complexity 1 38 0 799 183 108 9 chr3 40695115 40695328 -186829250 + L1MA8 LINE L1 6056 6289 -2 1301 171 171 49 chr3 40695511 40695815 -186828763 + MER47B DNA MER2_type 1 341 -77 1023 193 10 34 chr3 40695819 40696026 -186828552 - AluJo SINE Alu -27 285 84 312 203 108 0 chr3 40696026 40696100 -186828478 + MER47B DNA MER2_type 337 418 0 674 190 154 72 chr3 40696365 40696479 -186828099 - MER58C DNA MER1_type -2209 211 108 2285 93 0 7 chr3 40696479 40696780 -186827798 + AluSc SINE Alu 4 302 -7 674 190 154 72 chr3 40696780 40696860 -186827718 - MER58C DNA MER1_type -2312 108 1 2129 95 41 3 chr3 40696878 40697173 -186827405 + AluSx SINE Alu 3 308 -4 889 221 0 0 chr3 40697533 40697696 -186826882 - FAM SINE Alu -12 163 1 2220 95 0 10 chr3 40697798 40698092 -186826486 - AluY SINE Alu -20 291 1 2310 86 0 23 chr3 40698092 40698394 -186826184 - AluSq SINE Alu -18 295 1 1978 115 12 53 chr3 40698406 40698727 -186825851 - AluSg SINE Alu -2 308 1 854 198 50 25 chr3 40698727 40698929 -186825649 - MER57-int LTR ERV1 -997 6540 6334 2162 116 0 3 chr3 40698946 40699238 -186825340 - AluSc SINE Alu -18 291 1 189 0 0 0 chr3 40699345 40699366 -186825212 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 1204 151 41 0 chr3 40700583 40700801 -186823777 + L1MA8 LINE L1 6059 6285 -6 22 35 0 0 chr3 40700802 40700831 -186823747 + AT_rich Low_complexity Low_complexity 1 29 0 1718 159 20 30 chr3 40700951 40701253 -186823325 - AluJb SINE Alu -13 299 1 2263 113 0 3 chr3 40702011 40702321 -186822257 - AluSx SINE Alu -3 309 1 23 33 0 0 chr3 40702365 40702395 -186822183 + AT_rich Low_complexity Low_complexity 1 30 0 2180 120 0 0 chr3 40702555 40702855 -186821723 - AluSg SINE Alu -9 301 2 399 246 136 88 chr3 40702922 40703378 -186821200 - L1MEd LINE L1 -4862 1257 780 267 263 21 11 chr3 40703382 40703477 -186821101 - LTR33A LTR ERVL -7 516 421 1840 134 71 0 chr3 40704683 40704966 -186819612 + AluJb SINE Alu 1 303 -9 292 214 177 102 chr3 40705399 40705614 -186818964 - L2 LINE L2 -410 2904 2674 2064 118 34 0 chr3 40706105 40706402 -186818176 - AluSx SINE Alu -5 307 1 2984 159 75 38 chr3 40706961 40707047 -186817531 + L1MB7 LINE L1 5524 5605 -579 1924 157 10 0 chr3 40707047 40707347 -186817231 + AluSx SINE Alu 1 303 -9 2984 159 75 38 chr3 40707347 40707889 -186816689 + L1MB7 LINE L1 5605 6175 -9 387 0 0 0 chr3 40708272 40708315 -186816263 + (TA)n Simple_repeat Simple_repeat 1 43 0 2204 103 7 3 chr3 40709256 40709548 -186815030 - AluSx SINE Alu -19 293 1 368 292 11 59 chr3 40710176 40710379 -186814199 + L1ME4a LINE L1 5674 5868 -253 337 226 212 14 chr3 40710453 40710599 -186813979 - MIR SINE MIR -1 261 87 334 224 230 13 chr3 40710627 40710779 -186813799 - L1ME3 LINE L1 -1 6161 5977 2261 82 7 33 chr3 40710973 40711279 -186813299 + AluSc SINE Alu 1 298 -11 196 325 38 0 chr3 40711281 40711361 -186813217 - L2 LINE L2 -779 2535 2453 * 441 315 95 42 chr3 40711360 40711719 -186812859 - L2 LINE L2 0 3313 2936 2247 153 25 3 chr3 40712217 40712584 -186811994 - L1PA12 LINE L1 -7200 381 7 2705 158 76 54 chr3 40712591 40713232 -186811346 - L1M4 LINE L1 -3105 3277 2651 1598 181 3 32 chr3 40713232 40713542 -186811036 - AluJb SINE Alu -11 301 1 2705 158 76 54 chr3 40713542 40714799 -186809779 - L1M4 LINE L1 -3731 2651 1423 2223 73 0 21 chr3 40714799 40715114 -186809464 - AluY SINE Alu 0 309 1 2705 158 76 54 chr3 40715114 40716219 -186808359 - L1M4 LINE L1 -4959 1423 18 1542 251 133 24 chr3 40716238 40717038 -186807540 - L1MC4a LINE L1 -220 7588 6586 396 0 0 0 chr3 40717038 40717082 -186807496 + (TG)n Simple_repeat Simple_repeat 2 45 0 1542 251 133 24 chr3 40717082 40717246 -186807332 - L1MC4a LINE L1 -1222 6586 6441 2068 118 28 0 chr3 40717597 40717885 -186806693 + AluSx SINE Alu 1 296 -16 321 289 70 9 chr3 40718821 40718935 -186805643 - MIR SINE MIR -77 185 65 351 262 111 29 chr3 40719741 40719954 -186804624 + L1MC5 LINE L1 7029 7249 -737 1678 159 54 4 chr3 40719957 40720233 -186804345 + AluJb SINE Alu 3 292 -20 484 244 72 17 chr3 40720346 40720526 -186804052 + L1MC5 LINE L1 7714 7903 -58 279 0 0 0 chr3 40721200 40721231 -186803347 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1909 119 4 0 chr3 40721257 40721517 -186803061 - AluSx SINE Alu -51 261 1 1344 152 5 5 chr3 40722244 40722454 -186802124 - AluJb SINE Alu -20 292 83 2941 81 3 3 chr3 40722673 40723044 -186801534 - L1PB1 LINE L1 0 6151 5781 1443 93 5 5 chr3 40723079 40723284 -186801294 - L1PB1 LINE L1 -359 5792 5588 652 224 39 11 chr3 40723393 40723572 -186801006 + L1M4 LINE L1 4992 5175 -971 2115 139 3 0 chr3 40723616 40723919 -186800659 + AluSx SINE Alu 1 304 -8 1188 148 120 4 chr3 40723933 40724264 -186800314 + L1M4 LINE L1 5164 5528 -646 1878 140 32 0 chr3 40724361 40724646 -186799932 - AluSx SINE Alu -18 294 1 203 0 0 36 chr3 40724649 40724677 -186799901 + (TTTTTG)n Simple_repeat Simple_repeat 3 29 0 2016 114 3 10 chr3 40724868 40724880 -186799698 - AluSg SINE Alu -15 295 284 204 67 0 0 chr3 40724880 40724910 -186799668 + (TTGG)n Simple_repeat Simple_repeat 2 31 0 2016 114 3 10 chr3 40724910 40725194 -186799384 - AluSg SINE Alu -26 284 1 180 0 0 0 chr3 40725194 40725214 -186799364 + (T)n Simple_repeat Simple_repeat 1 20 0 7873 12 0 0 chr3 40725332 40726224 -186798354 - L1HS LINE L1 0 6155 5265 22 0 0 0 chr3 40726369 40726391 -186798187 + AT_rich Low_complexity Low_complexity 1 22 0 1816 175 0 23 chr3 40726563 40726872 -186797706 + AluJo SINE Alu 1 302 -10 310 274 19 70 chr3 40726896 40727053 -186797525 - L1MC5 LINE L1 -64 7897 7749 2366 122 79 32 chr3 40727513 40727956 -186796622 - L1MB4 LINE L1 -8 6172 5709 252 242 129 0 chr3 40728107 40728239 -186796339 - L1ME4a LINE L1 -190 5931 5783 1645 119 8 4 chr3 40728390 40728625 -186795953 + AluSp SINE Alu 1 236 -77 774 232 30 0 chr3 40728838 40729002 -186795576 + L1MC5 LINE L1 6665 6833 -1128 516 203 107 74 chr3 40729007 40729278 -186795300 + L1MC5 LINE L1 6896 7175 -786 1987 126 7 0 chr3 40729282 40729567 -186795011 + AluSx SINE Alu 7 293 -19 288 129 29 14 chr3 40729567 40729586 -186794992 + (TA)n Simple_repeat Simple_repeat 2 19 -53 1551 147 16 93 chr3 40729586 40729899 -186794679 + AluJb SINE Alu 1 289 -23 288 129 29 14 chr3 40729899 40729949 -186794629 + (TA)n Simple_repeat Simple_repeat 19 72 0 1829 176 0 7 chr3 40730122 40730418 -186794160 + AluJo SINE Alu 2 295 -17 609 278 30 22 chr3 40730436 40730666 -186793912 + L1MC5 LINE L1 7301 7532 -429 2246 100 10 3 chr3 40730668 40730967 -186793611 + AluSq SINE Alu 1 301 -12 1145 201 83 11 chr3 40730980 40731258 -186793320 + L1M4 LINE L1 4696 4993 -1153 478 260 24 53 chr3 40731271 40731440 -186793138 + L1MB3 LINE L1 13 176 -6366 2315 99 0 16 chr3 40731498 40731811 -186792767 - AluSg SINE Alu -2 308 1 801 180 0 7 chr3 40731987 40732126 -186792452 - AluJo SINE Alu -169 143 6 260 366 0 0 chr3 40732149 40732250 -186792328 - L1MC4 LINE L1 -613 7429 7329 245 260 10 67 chr3 40732334 40732438 -186792140 - L1M4c LINE L1 -6286 98 1 * 351 121 0 0 chr3 40732420 40732478 -186792100 - L1M4 LINE L1 -1153 4993 4936 2826 219 89 47 chr3 40732526 40732634 -186791944 + L1MB3 LINE L1 216 318 -6354 396 0 0 0 chr3 40732634 40732678 -186791900 + (TTG)n Simple_repeat Simple_repeat 2 45 0 2826 219 89 47 chr3 40732678 40732955 -186791623 + L1MB3 LINE L1 318 582 -6090 2508 128 0 20 chr3 40732955 40733299 -186791279 + MER1B DNA MER1_type 1 337 0 2826 219 89 47 chr3 40733299 40734178 -186790400 + L1MB3 LINE L1 582 1423 -5249 2051 145 3 0 chr3 40734178 40734489 -186790089 + AluSx SINE Alu 1 312 0 2826 219 89 47 chr3 40734489 40734696 -186789882 + L1MB3 LINE L1 1423 6314 -358 224 281 42 42 chr3 40734763 40734859 -186789719 + L2 LINE L2 3170 3265 -7 1574 138 62 49 chr3 40735280 40735605 -186788973 + L1MA7 LINE L1 5961 6289 -2 21 0 0 0 chr3 40735606 40735627 -186788951 + AT_rich Low_complexity Low_complexity 1 21 0 843 153 0 23 chr3 40736860 40736991 -186787587 + FLAM_C SINE Alu 1 128 -5 1685 166 39 7 chr3 40737582 40737866 -186786712 + AluJb SINE Alu 1 293 -19 316 338 26 26 chr3 40737974 40738128 -186786450 + MIR SINE MIR 1 154 -108 2174 119 53 61 chr3 40738216 40738257 -186786321 - THE1C LTR MaLR 0 375 335 2397 100 0 0 chr3 40738257 40738556 -186786022 + AluY SINE Alu 1 299 -12 2174 119 53 61 chr3 40738556 40738892 -186785686 - THE1C LTR MaLR -40 335 1 2417 82 0 0 chr3 40742106 40742409 -186782169 + AluY SINE Alu 1 303 -8 231 258 82 0 chr3 40742417 40742514 -186782064 - L1ME4a LINE L1 -12 6109 6005 2029 111 28 14 chr3 40742696 40742984 -186781594 - AluSx SINE Alu -20 292 1 875 162 0 22 chr3 40743728 40743864 -186780714 + FLAM_A SINE Alu 1 133 0 191 261 65 0 chr3 40744268 40744314 -186780264 - L2 LINE L2 -1 3271 3223 1316 206 0 0 chr3 40744745 40744964 -186779614 + MER20 DNA MER1_type 1 219 0 1342 182 10 76 chr3 40745051 40745353 -186779225 - AluJo SINE Alu -30 282 1 368 187 0 13 chr3 40745733 40745808 -186778770 + L1MB3 LINE L1 6399 6472 -209 617 144 0 0 chr3 40745808 40745898 -186778680 + 5S rRNA rRNA 1 90 -31 1014 175 27 0 chr3 40745898 40746081 -186778497 + L1MB3 LINE L1 6460 6647 -34 2009 145 0 3 chr3 40746178 40746475 -186778103 + AluSx SINE Alu 1 296 -16 829 120 49 21 chr3 40746482 40746624 -186777954 + FRAM SINE Alu 20 165 -11 384 336 123 5 chr3 40747089 40747300 -186777278 + MIR SINE MIR 4 239 -23 2584 156 8 34 chr3 40747466 40747630 -186776948 - L1MB2 LINE L1 -1 6170 6003 2284 108 0 0 chr3 40747630 40747927 -186776651 + AluSg SINE Alu 1 297 -13 2584 156 8 34 chr3 40747927 40748238 -186776340 - L1MB2 LINE L1 -168 6003 5707 270 333 11 0 chr3 40748258 40748345 -186776233 + L2 LINE L2 3222 3309 -4 2349 70 31 0 chr3 40748394 40748681 -186775897 + AluSx SINE Alu 5 300 -12 233 119 24 0 chr3 40749474 40749516 -186775062 + CT-rich Low_complexity Low_complexity 3 45 0 1555 187 0 28 chr3 40749521 40749804 -186774774 - AluJb SINE Alu -37 275 1 708 149 0 9 chr3 40749839 40749953 -186774625 - FLAM_A SINE Alu -2 140 28 1786 175 19 7 chr3 40750164 40750472 -186774106 - AluSx SINE Alu 0 312 1 1888 107 12 0 chr3 40750669 40750922 -186773656 + AluSx SINE Alu 1 256 -56 870 102 0 8 chr3 40751334 40751452 -186773126 + AluSq/x SINE Alu 20 136 -176 1991 114 3 26 chr3 40751452 40751760 -186772818 + AluSc SINE Alu 1 301 -8 322 286 67 0 chr3 40751872 40751991 -186772587 - L1M4 LINE L1 -845 5301 5175 1407 131 12 106 chr3 40752410 40752739 -186771839 + L1MB7 LINE L1 5717 6014 -170 428 153 27 19 chr3 40753399 40753486 -186771092 - L1M4 LINE L1 -1271 4875 4790 2252 114 0 0 chr3 40753486 40753784 -186770794 - AluSc SINE Alu -11 298 1 428 153 27 19 chr3 40753784 40753904 -186770674 - L1M4 LINE L1 -1356 4790 4538 985 166 0 115 chr3 40753904 40754077 -186770501 - AluJo SINE Alu -18 294 153 2262 107 0 10 chr3 40754077 40754387 -186770191 - AluSg1 SINE Alu -2 307 1 985 166 0 115 chr3 40754387 40754448 -186770130 - AluJo SINE Alu -159 153 87 1956 141 0 7 chr3 40754487 40754778 -186769800 - AluSg SINE Alu -17 293 5 2340 83 3 10 chr3 40754851 40755164 -186769414 - AluY SINE Alu 0 311 1 2336 87 7 0 chr3 40755164 40755464 -186769114 - AluSg SINE Alu -8 302 1 774 157 25 69 chr3 40755813 40756017 -186768561 + MER65A-int LTR ERV1 3536 3730 -2868 2786 201 87 95 chr3 40756095 40757352 -186767226 + MER65A-int LTR ERV1 2492 3758 -1178 1635 191 0 28 chr3 40757352 40757672 -186766906 - AluJo SINE Alu -1 311 1 2786 201 87 95 chr3 40757672 40757766 -186766812 + MER65A-int LTR ERV1 3758 3851 -1085 2149 137 0 0 chr3 40757766 40758073 -186766505 - AluSx SINE Alu -5 307 1 2786 201 87 95 chr3 40758073 40758143 -186766435 + MER65A-int LTR ERV1 3851 3920 -1016 1786 155 0 39 chr3 40758143 40758452 -186766126 - AluJb SINE Alu -13 299 3 2786 201 87 95 chr3 40758452 40758721 -186765857 + MER65A-int LTR ERV1 3920 4089 -847 1932 215 79 36 chr3 40758709 40759073 -186765505 + MER65A-int LTR ERV1 3605 3999 -872 * 2174 103 7 26 chr3 40759073 40759375 -186765203 - AluSx SINE Alu -16 296 1 1932 215 79 36 chr3 40759375 40759516 -186765062 + MER65A-int LTR ERV1 3999 4132 -739 2447 224 55 24 chr3 40759516 40760132 -186764446 + MER65A-int LTR ERV1 4237 4871 0 253 119 0 0 chr3 40760134 40760176 -186764402 + MER65A LTR ERV1 3 44 -401 2513 66 0 0 chr3 40760189 40760492 -186764086 + AluY SINE Alu 1 303 -8 2230 111 3 0 chr3 40760496 40760784 -186763794 + AluSx SINE Alu 1 289 -23 827 78 102 16 chr3 40760815 40760943 -186763635 + MER65A LTR ERV1 44 182 -263 1316 94 22 0 chr3 40761071 40761251 -186763327 + AluSg/x SINE Alu 110 293 -17 1860 250 105 29 chr3 40761328 40761682 -186762896 + L1M4 LINE L1 3977 4303 -1843 1462 183 66 4 chr3 40761682 40761955 -186762623 - AluJb SINE Alu -22 290 1 1860 250 105 29 chr3 40761955 40762399 -186762179 + L1M4 LINE L1 4303 4836 -1310 826 185 76 42 chr3 40762950 40763074 -186761504 - LTR56 LTR ERV1 0 445 327 2298 98 3 0 chr3 40763074 40763369 -186761209 - AluSc SINE Alu -9 300 5 826 185 76 42 chr3 40763369 40763564 -186761014 - LTR56 LTR ERV1 -118 327 141 722 209 228 5 chr3 40763674 40763885 -186760693 + MIR SINE MIR 2 259 -3 2578 37 7 0 chr3 40764257 40764554 -186760024 - AluY SINE Alu -12 299 1 23 54 0 0 chr3 40765820 40765857 -186758721 + AT_rich Low_complexity Low_complexity 1 37 0 2193 52 0 49 chr3 40767645 40767931 -186756647 - AluY SINE Alu 0 311 40 1736 171 0 23 chr3 40767947 40768246 -186756332 + AluJo SINE Alu 1 292 -20 329 159 0 16 chr3 40768871 40768934 -186755644 - MIR SINE MIR -131 131 70 358 43 0 0 chr3 40769455 40769501 -186755077 - L1PA3 LINE L1 -181 5974 5929 607 14 0 0 chr3 40769501 40769572 -186755006 + L1PA3 LINE L1 6082 6152 -3 2048 148 0 0 chr3 40769888 40770192 -186754386 - AluSx SINE Alu -8 304 1 1753 124 11 4 chr3 40770331 40770596 -186753982 - ERVL LTR ERVL -414 5350 5084 876 173 0 81 chr3 40770672 40770845 -186753733 + FRAM SINE Alu 1 158 -18 186 118 0 0 chr3 40771218 40771252 -186753326 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 401 317 50 35 chr3 40771685 40771887 -186752691 + MIR SINE MIR 9 213 -49 2155 112 31 0 chr3 40772134 40772420 -186752158 - AluSx SINE Alu -15 297 3 695 184 0 0 chr3 40772458 40772567 -186752011 + FLAM_C SINE Alu 2 110 -33 282 29 0 0 chr3 40772573 40772608 -186751970 + (CAAA)n Simple_repeat Simple_repeat 1 35 0 5665 217 71 33 chr3 40772953 40773240 -186751338 - L1MEc LINE L1 -2271 3944 3669 1718 187 11 0 chr3 40773240 40773523 -186751055 + AluJo SINE Alu 10 295 -17 1975 92 96 11 chr3 40773529 40773810 -186750768 + AluY SINE Alu 1 305 -6 5665 217 71 33 chr3 40773810 40773939 -186750639 - L1MEc LINE L1 -2550 3665 3542 2104 100 52 3 chr3 40773939 40774228 -186750350 - AluSq SINE Alu -10 303 1 5665 217 71 33 chr3 40774228 40775442 -186749136 - L1MEc LINE L1 -2673 3542 2376 2106 107 28 0 chr3 40775442 40775732 -186748846 - AluY SINE Alu -13 298 1 5665 217 71 33 chr3 40775732 40775883 -186748695 - L1MEc LINE L1 -3839 2376 2232 2119 137 0 9 chr3 40775883 40776198 -186748380 - AluSx SINE Alu 0 312 1 5665 217 71 33 chr3 40776198 40776443 -186748135 - L1MEc LINE L1 -3983 2232 1842 273 57 0 0 chr3 40776443 40776478 -186748100 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1865 145 0 4 chr3 40776484 40776760 -186747818 - AluSx SINE Alu -37 275 1 1619 108 29 43 chr3 40776985 40777263 -186747315 + AluSx SINE Alu 20 293 -19 4681 223 66 18 chr3 40777264 40778477 -186746101 + L1M4 LINE L1 2209 3493 -2653 2104 100 52 3 chr3 40778477 40778766 -186745812 + AluSq SINE Alu 1 303 -10 4681 223 66 18 chr3 40778766 40778882 -186745696 + L1M4 LINE L1 3493 3602 -2544 1921 93 96 11 chr3 40778896 40779176 -186745402 - AluY SINE Alu -7 304 1 784 257 135 35 chr3 40779206 40779583 -186744995 - MER50 LTR ERV1 -298 436 22 2035 183 57 5 chr3 40779589 40779972 -186744606 - MER61C LTR ERV1 0 434 32 9047 162 49 35 chr3 40779973 40781080 -186743498 - MER41-int LTR ERV1 -917 5029 3939 2242 110 13 0 chr3 40781080 40781381 -186743197 - AluSg SINE Alu -5 305 1 2244 116 0 0 chr3 40781386 40781687 -186742891 - AluSx SINE Alu -9 303 3 9047 162 49 35 chr3 40781687 40782710 -186741868 - MER41-int LTR ERV1 -2010 3936 3214 2400 53 0 7 chr3 40782710 40783024 -186741554 - AluY SINE Alu 0 312 1 9047 162 49 35 chr3 40783024 40783035 -186741543 - MER41-int LTR ERV1 -2732 3214 3205 2158 52 0 49 chr3 40783036 40783322 -186741256 - AluY SINE Alu 0 311 40 1736 171 0 23 chr3 40783338 40783637 -186740941 + AluJo SINE Alu 1 292 -20 329 159 0 16 chr3 40784136 40784199 -186740379 - MIR SINE MIR -131 131 70 358 43 0 0 chr3 40784720 40784766 -186739812 - L1PA4 LINE L1 -181 5974 5929 607 14 0 0 chr3 40784766 40784837 -186739741 + L1PA3 LINE L1 6082 6152 -3 2048 148 0 0 chr3 40785153 40785457 -186739121 - AluSx SINE Alu -8 304 1 1753 124 11 4 chr3 40785596 40785861 -186738717 - ERVL LTR ERVL -414 5350 5084 876 173 0 81 chr3 40785937 40786110 -186738468 + FRAM SINE Alu 1 158 -18 186 118 0 0 chr3 40786483 40786517 -186738061 + (TTTTTG)n Simple_repeat Simple_repeat 4 37 0 401 317 50 35 chr3 40786950 40787152 -186737426 + MIR SINE MIR 9 213 -49 2141 134 0 3 chr3 40787399 40787697 -186736881 - AluSx SINE Alu -15 297 1 863 178 0 67 chr3 40787697 40787877 -186736701 + MER50 LTR ERV1 566 733 -1 372 203 0 0 chr3 40787878 40787942 -186736636 - LTR39 LTR ERV1 -390 393 330 1077 180 14 23 chr3 40787942 40788159 -186736419 + AluJb SINE Alu 85 299 -13 754 126 8 63 chr3 40788161 40788288 -186736290 - LTR39 LTR ERV1 -446 337 218 1852 149 20 7 chr3 40788289 40788585 -186735993 + AluSq SINE Alu 1 300 -13 185 81 0 27 chr3 40788638 40788675 -186735903 + (CAAAAA)n Simple_repeat Simple_repeat 5 40 0 336 245 73 26 chr3 40788778 40788929 -186735649 + LTR23-int LTR ERV1 853 1010 -4113 1317 172 127 15 chr3 40788929 40789196 -186735382 + AluJo SINE Alu 1 297 -15 2315 71 3 3 chr3 40789256 40789539 -186735039 + AluY SINE Alu 1 310 0 211 37 0 0 chr3 40789539 40789566 -186735012 + (CAAA)n Simple_repeat Simple_repeat 2 168 0 810 238 34 15 chr3 40789636 40789842 -186734736 + LTR23-int LTR ERV1 5825 6034 -1503 431 85 0 0 chr3 40789842 40789901 -186734677 - AluSp SINE Alu -12 301 243 2525 10 0 19 chr3 40789904 40790212 -186734366 - pTR5 LTR ERV1 0 2438 2137 376 218 36 54 chr3 40790212 40790323 -186734255 - LTR30 LTR ERV1 -80 642 375 13824 27 0 4 chr3 40790323 40792509 -186732069 - pTR5 LTR ERV1 0 8399 504 635 126 35 152 chr3 40792507 40792849 -186731729 - Harlequin LTR ERV1 -5755 1141 840 * 37439 77 2 15 chr3 40792850 40798192 -186726386 - Harlequin LTR ERV1 -1935 503 1 371 235 10 0 chr3 40798192 40798290 -186726288 - LTR30 LTR ERV1 -80 642 544 954 73 0 44 chr3 40798290 40798430 -186726148 - pTR5 LTR ERV1 -413 2025 1880 1829 107 8 0 chr3 40798430 40798672 -186725906 - AluSp SINE Alu -67 246 3 954 73 0 44 chr3 40798672 40798688 -186725890 - pTR5 LTR ERV1 -558 1880 130 674 196 153 37 chr3 40798690 40798764 -186725814 + MER58C DNA MER1_type 1 65 -2355 2513 79 0 0 chr3 40798764 40799069 -186725509 - AluSc SINE Alu -1 308 4 674 196 153 37 chr3 40799069 40799183 -186725395 + MER58C DNA MER1_type 65 211 -4 306 203 108 0 chr3 40799448 40799522 -186725056 - MER47B DNA MER2_type 0 418 337 1029 193 10 34 chr3 40799522 40799729 -186724849 + AluJo SINE Alu 84 285 -27 1292 171 171 49 chr3 40799733 40800037 -186724541 - MER47B DNA MER2_type -77 341 1 780 183 108 9 chr3 40800220 40800433 -186724145 - L1MA8 LINE L1 -2 6289 6056 25 51 0 0 chr3 40800611 40800650 -186723928 + AT_rich Low_complexity Low_complexity 1 39 0 2325 96 0 7 chr3 40800858 40801159 -186723419 + AluSx SINE Alu 1 299 -13 1084 212 165 6 chr3 40801249 40801570 -186723008 - L1MD3 LINE L1 -1 7994 7623 24 0 0 0 chr3 40801848 40801872 -186722706 + AT_rich Low_complexity Low_complexity 1 24 0 1709 152 25 22 chr3 40801902 40802178 -186722400 - AluJb SINE Alu -35 277 1 309 315 103 10 chr3 40802272 40802458 -186722120 + L2 LINE L2 1221 1429 -1885 2266 113 0 13 chr3 40802458 40802767 -186721811 - AluSg SINE Alu -4 306 2 309 315 103 10 chr3 40802767 40802783 -186721795 + L2 LINE L2 1429 1442 -1872 374 246 136 88 chr3 40802834 40803290 -186721288 - L1MEd LINE L1 -4862 1257 780 267 263 21 11 chr3 40803294 40803389 -186721189 - LTR33A LTR ERVL -7 516 421 1852 134 71 0 chr3 40804597 40804880 -186719698 + AluJb SINE Alu 1 303 -9 235 214 177 102 chr3 40805313 40805528 -186719050 - L2 LINE L2 -410 2904 2674 2078 118 34 0 chr3 40806019 40806316 -186718262 - AluSx SINE Alu -5 307 1 2952 159 75 38 chr3 40806875 40806961 -186717617 + L1MB7 LINE L1 5524 5605 -579 1940 157 10 0 chr3 40806961 40807261 -186717317 + AluSx SINE Alu 1 303 -9 2952 159 75 38 chr3 40807261 40807803 -186716775 + L1MB7 LINE L1 5605 6175 -9 2311 98 3 0 chr3 40808155 40808450 -186716128 + AluSp SINE Alu 13 308 -5 582 182 81 7 chr3 40808480 40808628 -186715950 + L1MC/D LINE L1 5315 5473 -2335 361 269 76 7 chr3 40808633 40808778 -186715800 - L2 LINE L2 -804 2510 2356 959 128 0 8 chr3 40808778 40808911 -186715667 + AluSq/x SINE Alu 1 132 -180 2002 137 3 13 chr3 40808914 40809227 -186715351 + AluSg SINE Alu 1 310 0 669 155 0 9 chr3 40809438 40809554 -186715024 + FLAM_A SINE Alu 28 142 0 1146 221 4 33 chr3 40809587 40809859 -186714719 + AluJb SINE Alu 1 264 -48 313 350 28 11 chr3 40809978 40810155 -186714423 + CT-rich Low_complexity Low_complexity 1 180 0 27 56 0 0 chr3 40810488 40810524 -186714054 + GC_rich Low_complexity Low_complexity 1 36 0 1594 106 4 13 chr3 40810677 40810914 -186713664 - AluY SINE Alu -76 235 1 31 0 0 0 chr3 40810955 40810986 -186713592 + AT_rich Low_complexity Low_complexity 1 31 0 1955 127 10 19 chr3 40811323 40811637 -186712941 - AluY SINE Alu 0 311 1 1076 150 6 0 chr3 40812295 40812462 -186712116 - AluSx SINE Alu -5 305 138 207 235 0 0 chr3 40812494 40812545 -186712033 + (TA)n Simple_repeat Simple_repeat 2 52 0 2375 96 0 0 chr3 40812695 40812997 -186711581 - AluSx SINE Alu -10 302 1 888 135 0 15 chr3 40813000 40813133 -186711445 - AluSx SINE Alu -181 131 1 358 269 76 7 chr3 40813133 40813278 -186711300 + L2 LINE L2 2356 2510 -804 582 182 81 7 chr3 40813283 40813431 -186711147 - L1MC/D LINE L1 -2335 5473 5315 2392 97 0 7 chr3 40813461 40813771 -186710807 - AluSp SINE Alu -5 308 1 2242 102 20 10 chr3 40813790 40814094 -186710484 - AluSc SINE Alu -2 307 1 1421 224 20 92 chr3 40814097 40814427 -186710151 - L1MC/D LINE L1 -2210 3936 3584 2072 75 0 0 chr3 40814427 40814679 -186709899 + AluSx SINE Alu 38 289 -23 1421 224 20 92 chr3 40814679 40814743 -186709835 - L1MC/D LINE L1 -2562 3584 3581 2138 121 21 0 chr3 40814743 40815033 -186709545 + AluSx SINE Alu 1 296 -16 1421 224 20 92 chr3 40815033 40815128 -186709450 - L1MC/D LINE L1 -2565 3581 3481 2058 125 4 0 chr3 40817009 40817328 -186707250 - AluSx SINE Alu 0 320 1 2221 126 3 0 chr3 40817870 40818172 -186706406 - AluSq SINE Alu -10 303 1 27 29 0 0 chr3 40818978 40819012 -186705566 + AT_rich Low_complexity Low_complexity 1 34 0 496 231 19 0 chr3 40821098 40821202 -186703376 - MER5A DNA MER1_type -80 109 4 3275 247 52 40 chr3 40821629 40821817 -186702761 + L1MEc LINE L1 236 420 -5976 851 165 0 0 chr3 40821817 40821950 -186702628 + FLAM_C SINE Alu 1 133 0 3275 247 52 40 chr3 40821950 40822575 -186702003 + L1MEc LINE L1 420 1071 -5325 2112 129 3 23 chr3 40822575 40822885 -186701693 + AluSx SINE Alu 1 304 -8 3275 247 52 40 chr3 40822885 40823261 -186701317 + L1MEc LINE L1 1071 1441 -4955 929 172 0 0 chr3 40823262 40823407 -186701171 + AluSg/x SINE Alu 133 277 -35 183 80 0 0 chr3 40823407 40823432 -186701146 + (GA)n Simple_repeat Simple_repeat 2 26 0 822 52 10 0 chr3 40823697 40823794 -186700784 - AluY SINE Alu -213 98 1 541 261 119 0 chr3 40823794 40824012 -186700566 + L1MEc LINE L1 1610 1853 -4543 2318 95 0 3 chr3 40824014 40824319 -186700259 + AluSx SINE Alu 1 304 -8 305 294 67 0 chr3 40824431 40824550 -186700028 - L1M4 LINE L1 -845 5301 5175 2115 140 31 76 chr3 40824966 40825451 -186699127 + L1MB7 LINE L1 5713 6175 -9 200 119 48 24 chr3 40826776 40826818 -186697760 + T-rich Low_complexity Low_complexity 5 47 0 246 212 35 35 chr3 40826938 40827023 -186697555 - L1MC5 LINE L1 -24 7937 7853 238 141 78 0 chr3 40828288 40828352 -186696226 + CT-rich Low_complexity Low_complexity 3 71 0 290 125 42 0 chr3 40828358 40828406 -186696172 - U7 snRNA snRNA 0 63 14 246 79 0 53 chr3 40828887 40828925 -186695653 - Alu SINE Alu -264 36 1 2406 83 0 3 chr3 40829003 40829304 -186695274 - AluY SINE Alu -11 300 1 1076 150 6 0 chr3 40829962 40830129 -186694449 - AluSg/x SINE Alu -5 305 138 207 235 0 0 chr3 40830161 40830212 -186694366 + (TA)n Simple_repeat Simple_repeat 2 52 0 2363 87 13 0 chr3 40830362 40830660 -186693918 - AluSx SINE Alu -10 302 1 409 239 174 36 chr3 40831351 40831478 -186693100 - L1MC5 LINE L1 -37 7924 7816 2153 136 0 3 chr3 40831478 40831779 -186692799 - AluSx SINE Alu -12 300 1 409 239 174 36 chr3 40831779 40831927 -186692651 - L1MC5 LINE L1 -145 7816 7611 194 156 22 0 chr3 40834143 40834188 -186690390 + CT-rich Low_complexity Low_complexity 3 48 0 25 0 0 0 chr3 40835004 40835029 -186689549 + AT_rich Low_complexity Low_complexity 1 25 0 514 227 47 31 chr3 40836308 40836436 -186688142 - FLAM_A SINE Alu -12 130 1 584 159 0 37 chr3 40836789 40836896 -186687682 - AluJo SINE Alu -17 295 193 687 171 0 8 chr3 40836905 40837022 -186687556 - AluJo SINE Alu -186 116 1 1348 168 226 125 chr3 40837024 40837895 -186686683 - Charlie2 DNA MER1_type -36 2826 1868 967 194 17 6 chr3 40837899 40838079 -186686499 - AluJb SINE Alu -11 301 120 2373 85 0 3 chr3 40838140 40838435 -186686143 - AluSg SINE Alu -16 294 1 753 133 0 108 chr3 40838443 40838601 -186685977 - FLAM_C SINE Alu -1 142 2 289 162 297 0 chr3 40838610 40838684 -186685894 - Charlie2 DNA MER1_type -2504 278 183 588 102 19 19 chr3 40838960 40839068 -186685510 + (TAGA)n Simple_repeat Simple_repeat 2 109 0 324 289 31 23 chr3 40840774 40840902 -186683676 - L2 LINE L2 -26 3287 3159 1124 177 27 69 chr3 40841649 40842099 -186682479 - L1MA4A LINE L1 -25 6278 5787 377 284 117 22 chr3 40842416 40842638 -186681940 - L1MD2 LINE L1 0 6359 6117 * 1417 183 244 21 chr3 40842634 40843114 -186681464 - L1MD2 LINE L1 0 6359 5773 416 208 104 45 chr3 40844432 40844586 -186679992 - L1MC5 LINE L1 -55 7906 7744 300 311 49 33 chr3 40844936 40845058 -186679520 + MIR3 SINE MIR 56 179 -29 276 100 0 0 chr3 40846757 40846797 -186677781 + (T)n Simple_repeat Simple_repeat 1 40 0 764 202 40 83 chr3 40847553 40847781 -186676797 - MER58A DNA MER1_type -6 218 1 275 162 0 44 chr3 40848129 40848197 -186676381 - L1M2 LINE L1 -463 5658 5609 1672 161 48 17 chr3 40848204 40848321 -186676257 + AluJb SINE Alu 3 115 -197 372 22 0 0 chr3 40848321 40848366 -186676212 + (TAA)n Simple_repeat Simple_repeat 2 46 0 1672 161 48 17 chr3 40848366 40848539 -186676039 + AluJb SINE Alu 115 302 -10 446 272 69 6 chr3 40848597 40848770 -186675808 - L1MB7 LINE L1 0 6184 6001 357 316 141 51 chr3 40850206 40850847 -186673731 - L2 LINE L2 -4 3309 2583 647 252 122 14 chr3 40850981 40851195 -186673383 - L2 LINE L2 -976 2338 2102 279 0 0 0 chr3 40854397 40854428 -186670150 + (CTAA)n Simple_repeat Simple_repeat 2 32 0 2522 62 0 7 chr3 40854461 40854767 -186669811 - AluY SINE Alu -7 304 1 2014 130 0 31 chr3 40854911 40855234 -186669344 - AluSq SINE Alu 0 313 1 2103 68 43 7 chr3 40857511 40857791 -186666787 - AluSg SINE Alu -16 294 5 205 339 18 36 chr3 40857843 40857955 -186666623 + MER5B DNA MER1_type 69 178 0 2045 137 0 7 chr3 40857985 40858277 -186666301 - AluSx SINE Alu -22 290 1 789 137 150 7 chr3 40858640 40858793 -186665785 + MSTD LTR MaLR 222 396 0 294 179 51 3 chr3 40859771 40859852 -186664726 + L1ME3A LINE L1 5457 5538 -628 679 215 236 41 chr3 40859874 40860218 -186664360 + L1ME3A LINE L1 5656 6066 -104 2050 89 79 10 chr3 40860897 40861189 -186663389 - AluSp SINE Alu -1 312 1 274 289 66 0 chr3 40861564 40861640 -186662938 - MIR SINE MIR -88 174 94 2246 89 10 10 chr3 40861979 40862281 -186662297 - AluSp SINE Alu -11 302 1 2221 102 20 10 chr3 40862300 40862604 -186661974 - AluSc SINE Alu -2 307 1 1132 230 13 95 chr3 40862607 40862937 -186661641 - L1M4 LINE L1 -2210 3936 3580 2042 75 0 0 chr3 40862937 40863189 -186661389 + AluSx SINE Alu 38 289 -23 1132 230 13 95 chr3 40863189 40863253 -186661325 - L1M4 LINE L1 -2566 3580 3584 2114 124 21 0 chr3 40863253 40863543 -186661035 + AluSx SINE Alu 1 296 -16 1132 230 13 95 chr3 40863543 40863620 -186660958 - L1M4 LINE L1 -2561 3585 3503 2035 125 4 0 chr3 40865520 40865839 -186658739 - AluSx SINE Alu 0 320 1 2219 126 3 0 chr3 40866381 40866683 -186657895 - AluSq SINE Alu -10 303 1 27 29 0 0 chr3 40867489 40867523 -186657055 + AT_rich Low_complexity Low_complexity 1 34 0 545 224 160 19 chr3 40869557 40869713 -186654865 - MER5A DNA MER1_type -8 181 4 187 386 68 15 chr3 40869952 40870084 -186654494 - MIR3 SINE MIR -58 150 12 2950 244 49 45 chr3 40870149 40870328 -186654250 + L1MEc LINE L1 242 419 -5977 851 149 0 0 chr3 40870328 40870449 -186654129 + FLAM_C SINE Alu 1 121 -12 2950 244 49 45 chr3 40870449 40871087 -186653491 + L1MEc LINE L1 419 1068 -5328 1997 133 10 23 chr3 40871087 40871395 -186653183 + AluSx SINE Alu 1 304 -8 2950 244 49 45 chr3 40871395 40871771 -186652807 + L1MEc LINE L1 1068 1441 -4955 918 172 0 0 chr3 40871772 40871917 -186652661 + AluSg/x SINE Alu 131 275 -35 325 344 38 8 chr3 40871939 40872070 -186652508 + HAL1 LINE L1 1413 1547 -960 1406 98 0 0 chr3 40872201 40872374 -186652204 - AluSq SINE Alu -140 173 1 1333 186 74 61 chr3 40872522 40872995 -186651583 - L1MC5 LINE L1 -439 7522 7044 2218 121 0 13 chr3 40872999 40873312 -186651266 - AluSx SINE Alu -3 309 1 195 42 0 0 chr3 40873319 40873343 -186651235 + (T)n Simple_repeat Simple_repeat 1 24 0 671 267 85 8 chr3 40873361 40873619 -186650959 - L1MC4 LINE L1 -1064 6978 6701 5752 213 18 30 chr3 40873636 40874198 -186650380 - L1ME3 LINE L1 -1 6161 5594 1870 161 9 6 chr3 40874198 40874520 -186650058 - L1PA15 LINE L1 0 6165 5843 5752 213 18 30 chr3 40874520 40875489 -186649089 - L1ME3 LINE L1 -568 5594 4660 2103 145 0 0 chr3 40875489 40875792 -186648786 - AluSx SINE Alu -9 303 1 5752 213 18 30 chr3 40875792 40876322 -186648256 - L1ME3 LINE L1 -1502 4660 4125 1500 266 112 28 chr3 40876324 40876691 -186647887 - L1ME LINE L1 -573 5580 5245 2177 84 3 3 chr3 40876691 40876999 -186647579 - AluSx SINE Alu 0 308 1 2130 132 0 0 chr3 40877006 40877295 -186647283 - AluSc SINE Alu -18 291 3 1500 266 112 28 chr3 40877295 40878041 -186646537 - L1ME LINE L1 -913 5240 4364 244 135 0 0 chr3 40878065 40878102 -186646476 - Alu SINE Alu -13 289 253 433 194 76 21 chr3 40878102 40878246 -186646332 - L1ME LINE L1 -4109 2201 2050 503 114 0 0 chr3 40878370 40878440 -186646138 - AluJ/FRAM SINE Alu -18 294 225 797 269 162 41 chr3 40878485 40878800 -186645778 - L1ME LINE L1 -4501 1809 1534 1667 165 0 66 chr3 40878800 40879123 -186645455 - AluJb SINE Alu 0 303 1 797 269 162 41 chr3 40879123 40879787 -186644791 - L1ME LINE L1 -4776 1534 710 2728 174 37 7 chr3 40880726 40881039 -186643539 - L1MB5 LINE L1 -67 6107 5770 1452 204 94 3 chr3 40881039 40881357 -186643221 + MER7A DNA MER2_type 1 345 -1 2728 174 37 7 chr3 40881357 40881582 -186642996 - L1MB5 LINE L1 -404 5770 5553 274 233 89 4 chr3 40881585 40881728 -186642850 - L1MCa LINE L1 -4601 1528 1319 356 290 69 40 chr3 40881865 40882141 -186642437 - L1MCa LINE L1 -4881 1238 955 228 367 14 14 chr3 40882216 40882355 -186642223 - L1ME LINE L1 -5453 666 528 227 181 67 19 chr3 40882884 40882989 -186641589 + (TA)n Simple_repeat Simple_repeat 2 111 0 348 43 0 0 chr3 40882990 40883036 -186641542 + (TG)n Simple_repeat Simple_repeat 1 46 0 1969 141 0 4 chr3 40883036 40883313 -186641265 - AluSx SINE Alu -33 279 4 6492 146 16 51 chr3 40883315 40883625 -186640953 - L1MA4 LINE L1 -45 6255 5936 1593 206 3 3 chr3 40883625 40883921 -186640657 - AluJb SINE Alu -16 296 1 6492 146 16 51 chr3 40883921 40883946 -186640632 - L1MA4 LINE L1 -364 5936 5912 1429 160 80 23 chr3 40883946 40884208 -186640370 - AluJo SINE Alu -31 281 5 6492 146 16 51 chr3 40884208 40885087 -186639491 - L1MA4 LINE L1 -388 5912 5004 363 44 0 0 chr3 40885087 40885132 -186639446 + (CA)n Simple_repeat Simple_repeat 2 46 0 6492 146 16 51 chr3 40885132 40886165 -186638413 - L1MA4 LINE L1 -1296 5004 4052 638 220 21 0 chr3 40886160 40886346 -186638232 - L1MA4 LINE L1 -2704 3442 3253 * 261 299 26 43 chr3 40886635 40886752 -186637826 + MIR SINE MIR 73 187 -75 1038 182 6 0 chr3 40887481 40887651 -186636927 - AluSx SINE Alu -141 171 1 1990 224 52 12 chr3 40887653 40888234 -186636344 - L1M4 LINE L1 -844 5302 4699 741 194 0 8 chr3 40888286 40888420 -186636158 - FLAM_A SINE Alu 0 133 1 680 251 21 8 chr3 40888454 40888652 -186635926 - L1MC/D LINE L1 -2125 5660 5458 * 3432 240 28 47 chr3 40888626 40888980 -186635598 - L1M4 LINE L1 -1542 4604 4245 2280 100 7 3 chr3 40888980 40889281 -186635297 - AluSx SINE Alu -10 302 1 3432 240 28 47 chr3 40889281 40889529 -186635049 - L1M4 LINE L1 -1901 4245 3994 2081 129 0 10 chr3 40889529 40889831 -186634747 + AluSx SINE Alu 1 299 -13 3432 240 28 47 chr3 40889831 40890492 -186634086 - L1M4 LINE L1 -2152 3994 3365 * 5664 162 23 14 chr3 40890490 40891554 -186633024 + L1MA2 LINE L1 3476 4548 -1598 499 195 0 0 chr3 40891556 40891633 -186632945 - AluSp/q SINE Alu -38 275 199 4823 112 16 8 chr3 40891634 40892903 -186631675 + L1MA2 LINE L1 4533 5814 -490 3142 105 33 12 chr3 40892943 40893430 -186631148 + L1MA2 LINE L1 5804 6300 -4 569 270 84 9 chr3 40893431 40893657 -186630921 - L1M4 LINE L1 -2763 3383 3141 1234 156 74 33 chr3 40893659 40893927 -186630651 - AluJo SINE Alu 0 312 45 1819 197 70 29 chr3 40893928 40894010 -186630568 - L1M4 LINE L1 -3015 3131 3054 2340 100 7 3 chr3 40894010 40894319 -186630259 - AluSq SINE Alu -3 310 1 1819 197 70 29 chr3 40894319 40894718 -186629860 - L1M4 LINE L1 -3092 3054 2630 484 225 39 16 chr3 40894726 40894855 -186629723 - L1M4 LINE L1 -2392 3754 3623 513 155 21 113 chr3 40894856 40894998 -186629580 + MLT1D LTR MaLR 1 129 -376 559 203 273 0 chr3 40895046 40895189 -186629389 + MLT1D LTR MaLR 324 505 0 413 284 119 11 chr3 40895197 40895373 -186629205 - L1M4 LINE L1 -2532 3614 3420 505 248 95 9 chr3 40895384 40895594 -186628984 - L1M4 LINE L1 -2831 3315 3088 527 274 169 32 chr3 40895990 40896362 -186628216 - L1M4 LINE L1 -1592 4554 4132 2171 190 94 34 chr3 40896398 40897013 -186627565 - Zaphod DNA AcHobo -5 4026 3375 26 118 0 0 chr3 40898239 40898273 -186626305 + GC_rich Low_complexity Low_complexity 1 34 0 201 39 0 0 chr3 40898527 40898553 -186626025 + (A)n Simple_repeat Simple_repeat 1 26 0 889 221 0 0 chr3 40898918 40899081 -186625497 - FAM SINE Alu -12 163 1 1996 129 0 20 chr3 40899183 40899477 -186625101 - AluSg SINE Alu -20 290 3 675 173 0 9 chr3 40899515 40899625 -186624953 + FLAM_C SINE Alu 2 110 -33 318 26 0 0 chr3 40899631 40899670 -186624908 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 926 263 14 11 chr3 40900016 40900294 -186624284 - L1M4 LINE L1 -2271 3875 3597 1590 157 19 4 chr3 40900303 40900564 -186624014 + AluJo SINE Alu 10 274 -38 216 97 0 0 chr3 40900575 40900606 -186623972 + (TAA)n Simple_repeat Simple_repeat 3 33 0 310 169 405 14 chr3 40900606 40900754 -186623824 + L1MEc LINE L1 1842 2047 -4349 371 283 11 59 chr3 40900833 40901097 -186623481 + CT-rich Low_complexity Low_complexity 1 251 0 3364 210 30 13 chr3 40901242 40901334 -186623244 - L1MC2 LINE L1 -278 6066 5977 1506 181 27 24 chr3 40901334 40901627 -186622951 - AluJo SINE Alu -18 294 1 3364 210 30 13 chr3 40901627 40902292 -186622286 - L1MC2 LINE L1 -367 5977 5296 489 188 177 100 chr3 40902525 40902686 -186621892 - MSTA LTR MaLR -49 379 232 2206 91 0 34 chr3 40902686 40902983 -186621595 - AluSc SINE Alu -20 289 3 489 188 177 100 chr3 40902983 40903093 -186621485 - MSTA LTR MaLR -196 232 2 19964 100 23 5 chr3 41003544 41006349 -186518229 - L1P LINE L1 -3287 2859 5 201 262 184 39 chr3 41006764 41006867 -186517711 + MIR3 SINE MIR 85 202 -6 260 324 73 39 chr3 41007116 41007295 -186517283 - MIR3 SINE MIR -21 187 3 260 273 57 23 chr3 41007783 41007871 -186516707 - MIR SINE MIR -109 153 63 225 94 0 0 chr3 41009477 41009509 -186515069 + (GAAA)n Simple_repeat Simple_repeat 3 34 0 315 0 0 0 chr3 41009816 41009851 -186514727 + (ATTG)n Simple_repeat Simple_repeat 4 38 0 212 182 200 0 chr3 41010320 41010375 -186514203 + L2 LINE L2 3245 3310 -3 467 287 18 30 chr3 41010504 41010668 -186513910 + MIR SINE MIR 98 259 -3 430 302 62 19 chr3 41010716 41010904 -186513674 + MIR SINE MIR 7 199 -63 633 107 0 58 chr3 41010930 41011033 -186513545 + MER4A LTR ERV1 1 97 -567 * 1727 129 174 74 chr3 41011030 41011393 -186513185 + MER4A LTR ERV1 257 655 -9 1402 172 0 22 chr3 41011393 41011661 -186512917 + AluJo SINE Alu 11 272 -40 299 35 23 92 chr3 41011824 41011911 -186512667 + (CGGGGG)n Simple_repeat Simple_repeat 3 83 0 212 164 14 41 chr3 41011959 41012032 -186512546 + (CGGG)n Simple_repeat Simple_repeat 4 74 0 231 88 0 0 chr3 41012039 41012073 -186512505 + (G)n Simple_repeat Simple_repeat 1 34 0 252 212 23 53 chr3 41012111 41012243 -186512335 + (CGGGG)n Simple_repeat Simple_repeat 3 130 0 388 313 56 6 chr3 41012319 41012498 -186512080 - L1ME3 LINE L1 -200 5962 5775 195 100 0 0 chr3 41012556 41012586 -186511992 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 356 244 25 84 chr3 41013681 41013800 -186510778 + L2 LINE L2 3183 3294 -19 273 57 0 0 chr3 41013801 41013836 -186510742 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2011 117 0 0 chr3 41013839 41014121 -186510457 - AluSx SINE Alu -30 282 1 4162 216 63 9 chr3 41014732 41015186 -186509392 + L1MC2 LINE L1 1 429 -6135 1706 183 39 9 chr3 41015186 41015520 -186509058 - MER2 DNA MER2_type 0 344 1 4162 216 63 9 chr3 41015520 41016794 -186507784 + L1MC2 LINE L1 429 1837 -4727 * 5305 166 72 19 chr3 41016764 41018016 -186506562 + L1MC2 LINE L1 5416 6738 -24 383 301 78 54 chr3 41018196 41018528 -186506050 + L1ME2 LINE L1 3496 3835 -2729 707 234 81 38 chr3 41018547 41018884 -186505694 + L1ME2 LINE L1 5676 6023 -557 412 309 106 50 chr3 41018870 41019246 -186505332 + HAL1 LINE L1 3 399 -2108 * 2677 10 0 3 chr3 41019282 41019584 -186504994 + AluYa5 SINE Alu 1 301 -10 580 341 94 0 chr3 41019584 41019807 -186504771 - L2 LINE L2 -254 3059 2816 725 219 19 13 chr3 41019825 41019980 -186504598 - MLT1C LTR MaLR 0 467 312 424 194 5 161 chr3 41020005 41020191 -186504387 + L1ME2 LINE L1 6209 6365 -217 22 56 0 0 chr3 41020525 41020561 -186504017 + GC_rich Low_complexity Low_complexity 1 36 0 55 16 0 0 chr3 41020606 41020668 -186503910 + GC_rich Low_complexity Low_complexity 1 62 0 185 105 0 26 chr3 41020789 41020827 -186503751 + (CCCCCG)n Simple_repeat Simple_repeat 6 42 0 428 139 14 0 chr3 41020941 41021013 -186503565 - L1P LINE L1 -1170 4976 4904 1359 146 108 16 chr3 41021013 41021451 -186503127 - MER21A LTR ERV1 -364 499 1 2235 137 48 8 chr3 41021451 41021485 -186503093 - MER21A-int LTR ERV1 0 4191 4160 491 0 17 0 chr3 41021485 41021544 -186503034 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 2235 137 48 8 chr3 41021544 41021881 -186502697 - MER21A-int LTR ERV1 -31 4160 3805 5121 206 6 12 chr3 41021882 41022990 -186501588 - L1 LINE L1 -1226 4920 3819 446 285 78 90 chr3 41023123 41023645 -186500933 - L1 LINE L1 -1225 4921 4406 21 156 0 0 chr3 41023669 41023714 -186500864 + AT_rich Low_complexity Low_complexity 1 45 0 307 240 40 0 chr3 41023839 41023914 -186500664 - L1MC5 LINE L1 -385 7576 7499 186 133 0 0 chr3 41026945 41026975 -186497603 + (GA)n Simple_repeat Simple_repeat 2 31 0 183 288 121 15 chr3 41027141 41027207 -186497371 - MIR SINE MIR -163 99 27 499 208 133 0 chr3 41027257 41027377 -186497201 + MIR SINE MIR 114 249 -13 631 189 0 0 chr3 41027736 41027847 -186496731 + L1ME LINE L1 5392 5502 -662 1685 320 49 33 chr3 41028423 41029255 -186495323 - L2 LINE L2 -222 3050 2171 396 281 96 7 chr3 41030872 41031018 -186493560 - L2 LINE L2 -3 3269 3111 824 250 81 0 chr3 41031162 41031398 -186493180 - MER90 LTR ERV1 0 614 360 540 314 19 39 chr3 41032557 41032764 -186491814 + MIR SINE MIR 16 218 -44 394 222 21 69 chr3 41032943 41033087 -186491491 - MIR3 SINE MIR -11 197 61 267 330 125 22 chr3 41033264 41033488 -186491090 + L2 LINE L2 3024 3270 -2 21 0 0 0 chr3 41034673 41034694 -186489884 + AT_rich Low_complexity Low_complexity 1 21 0 280 229 230 78 chr3 41035877 41036054 -186488524 - MIR SINE MIR -18 244 45 289 363 0 0 chr3 41036520 41036611 -186487967 + C-rich Low_complexity Low_complexity 1 91 0 292 226 39 50 chr3 41036831 41037012 -186487566 + (CCA)n Simple_repeat Simple_repeat 2 180 0 859 274 73 4 chr3 41037180 41037425 -186487153 - MIR SINE MIR 0 262 1 434 277 99 7 chr3 41037603 41037744 -186486834 - MIR SINE MIR -28 234 81 24 0 0 0 chr3 41038747 41038771 -186485807 + AT_rich Low_complexity Low_complexity 1 24 0 322 285 40 60 chr3 41039422 41039573 -186485005 + L1ME1 LINE L1 5988 6135 -31 1358 147 5 0 chr3 41039573 41039797 -186484781 + AluY SINE Alu 56 280 -31 34 55 0 0 chr3 41039801 41039856 -186484722 + GC_rich Low_complexity Low_complexity 1 55 0 * 171 42 0 26 chr3 41039828 41040136 -186484442 + GC_rich Low_complexity Low_complexity 1 300 0 50 75 0 0 chr3 41040138 41040244 -186484334 + GC_rich Low_complexity Low_complexity 1 106 0 1942 112 3 22 chr3 41040791 41041103 -186483475 - AluSx SINE Alu -6 306 1 26 30 0 0 chr3 41041150 41041183 -186483395 + AT_rich Low_complexity Low_complexity 1 33 0 2230 55 44 3 chr3 41041212 41041505 -186483073 - AluY SINE Alu -6 305 1 2955 169 35 11 chr3 41041505 41042078 -186482500 + L1P LINE L1 1832 2418 -3728 419 224 41 20 chr3 41042197 41042295 -186482283 + FRAM SINE Alu 63 162 -4 461 255 7 83 chr3 41042295 41042370 -186482208 - L1MC4 LINE L1 -1405 6590 6534 1699 146 38 0 chr3 41042370 41042658 -186481920 - AluJb SINE Alu -13 299 1 461 255 7 83 chr3 41042658 41042748 -186481830 - L1MC4 LINE L1 -1461 6534 6439 308 390 37 18 chr3 41043012 41043176 -186481402 - L2 LINE L2 -598 2716 2550 247 284 97 8 chr3 41043782 41043916 -186480662 + L2 LINE L2 1963 2108 -1206 1583 221 31 13 chr3 41043988 41044377 -186480201 + Charlie4a DNA MER1_type 38 433 -75 1972 106 11 7 chr3 41044378 41044661 -186479917 + AluSc SINE Alu 1 284 -25 425 313 91 5 chr3 41044715 41044913 -186479665 + L2 LINE L2 2171 2385 -929 502 238 14 56 chr3 41045260 41045368 -186479210 + L2 LINE L2 3134 3236 -36 1876 142 122 47 chr3 41045368 41045770 -186478808 - MSTB1 LTR MaLR 0 432 1 502 238 14 56 chr3 41045770 41045804 -186478774 + L2 LINE L2 3236 3270 -2 183 80 0 0 chr3 41045807 41045832 -186478746 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 217 316 13 25 chr3 41045961 41046040 -186478538 - L2 LINE L2 -198 3074 2997 210 327 0 0 chr3 41046732 41046787 -186477791 + G-rich Low_complexity Low_complexity 1 55 0 262 296 19 19 chr3 41046929 41047037 -186477541 + LTR16A1 LTR ERVL 350 457 0 419 192 0 0 chr3 41047076 41047154 -186477424 + L2 LINE L2 3195 3272 0 356 341 0 0 chr3 41048218 41048344 -186476234 + G-rich Low_complexity Low_complexity 1 126 0 21 36 0 0 chr3 41048349 41048377 -186476201 + GC_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr3 41048415 41048465 -186476113 + GC_rich Low_complexity Low_complexity 1 50 0 346 230 9 35 chr3 41048475 41048588 -186475990 + G-rich Low_complexity Low_complexity 2 111 0 203 309 0 0 chr3 41048631 41048686 -186475892 + GA-rich Low_complexity Low_complexity 3 57 0 260 282 113 8 chr3 41049035 41049159 -186475419 - L2 LINE L2 0 3272 3136 212 273 13 26 chr3 41049285 41049362 -186475216 + MIR3 SINE MIR 95 170 -38 447 52 0 0 chr3 41049514 41049572 -186475006 + (TC)n Simple_repeat Simple_repeat 2 59 0 285 29 0 0 chr3 41049572 41049606 -186474972 + (CA)n Simple_repeat Simple_repeat 2 35 0 2237 124 0 3 chr3 41050271 41050577 -186474001 + AluSx SINE Alu 1 305 -7 275 238 25 25 chr3 41050587 41050667 -186473911 + MIR SINE MIR 46 125 -83 419 195 0 11 chr3 41051589 41051676 -186472902 + L2 LINE L2 3224 3309 -4 30 0 0 0 chr3 41051971 41052001 -186472577 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr3 41052212 41052237 -186472341 + AT_rich Low_complexity Low_complexity 1 25 0 328 324 33 63 chr3 41052768 41053101 -186471477 - L2 LINE L2 -3 3310 2988 1077 153 40 22 chr3 41053265 41053493 -186471085 - L1MB7 LINE L1 -1 6183 5952 22 0 0 0 chr3 41053871 41053893 -186470685 + AT_rich Low_complexity Low_complexity 1 22 0 1695 179 3 17 chr3 41056206 41056497 -186468081 + AluJb SINE Alu 1 287 -25 6964 65 10 2 chr3 41056652 41058110 -186466468 + L1PA6 LINE L1 4691 6154 0 819 201 208 26 chr3 41059154 41059418 -186465160 + L1ME LINE L1 5371 5682 -488 550 222 0 0 chr3 41059420 41059519 -186465059 + MER33 DNA MER1_type 2 100 -224 2347 76 3 7 chr3 41059522 41059823 -186464755 + AluSg1 SINE Alu 1 300 -9 23 0 0 0 chr3 41060010 41060033 -186464545 + AT_rich Low_complexity Low_complexity 1 23 0 7723 159 27 23 chr3 41060133 41061717 -186462861 - L1P3 LINE L1 -4734 1141 2 475 317 54 5 chr3 41061960 41062181 -186462397 - MIR SINE MIR -8 254 23 243 152 0 0 chr3 41062357 41062403 -186462175 + C-rich Low_complexity Low_complexity 1 46 0 415 335 9 28 chr3 41062424 41062694 -186461884 + C-rich Low_complexity Low_complexity 1 264 0 231 203 0 0 chr3 41062727 41062791 -186461787 + C-rich Low_complexity Low_complexity 1 64 0 1806 111 8 0 chr3 41063015 41063268 -186461310 - AluSp SINE Alu -58 255 1 868 199 39 2 chr3 41063431 41063637 -186460941 - MIR SINE MIR -21 241 31 2174 111 3 0 chr3 41063639 41063936 -186460642 - AluSx SINE Alu -14 298 1 278 267 10 30 chr3 41064665 41064766 -186459812 + (TCTCTG)n Simple_repeat Simple_repeat 2 100 0 613 285 43 40 chr3 41064847 41065100 -186459478 + MIR SINE MIR 9 262 0 180 0 0 0 chr3 41065253 41065273 -186459305 + (T)n Simple_repeat Simple_repeat 1 20 0 2583 53 0 0 chr3 41065739 41066038 -186458540 - AluY SINE Alu -11 300 2 23 33 0 0 chr3 41066685 41066715 -186457863 + AT_rich Low_complexity Low_complexity 1 30 0 1610 168 88 3 chr3 41068558 41068855 -186455723 - MSTB LTR MaLR -104 322 1 1056 243 145 33 chr3 41069060 41069488 -186455090 - MLT1G1 LTR MaLR 0 595 120 280 354 25 6 chr3 41069613 41069774 -186454804 + C-rich Low_complexity Low_complexity 3 166 0 289 251 5 87 chr3 41069838 41070033 -186454545 + C-rich Low_complexity Low_complexity 2 180 0 539 250 14 7 chr3 41070270 41070410 -186454168 + L1M1 LINE L1 552 692 -6873 620 270 37 11 chr3 41070482 41070671 -186453907 + MIR SINE MIR 25 218 -44 229 198 17 52 chr3 41071484 41071600 -186452978 + (CGGGG)n Simple_repeat Simple_repeat 3 114 0 * 269 264 11 22 chr3 41071532 41071714 -186452864 + (CGGG)n Simple_repeat Simple_repeat 1 180 0 23 0 0 0 chr3 41072598 41072621 -186451957 + AT_rich Low_complexity Low_complexity 1 23 0 8813 92 6 1 chr3 41073296 41074537 -186450041 - L1P LINE L1 -2503 3643 2396 21 0 0 0 chr3 41075417 41075438 -186449140 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr3 41076725 41076746 -186447832 + (CA)n Simple_repeat Simple_repeat 2 22 0 484 126 103 0 chr3 41076750 41076837 -186447741 - LTR37B LTR ERV1 -25 443 348 332 261 53 93 chr3 41076837 41077063 -186447515 + L1MC4 LINE L1 7755 7971 -71 838 245 78 96 chr3 41077128 41077558 -186447020 - L1MC4a LINE L1 -1725 6083 5662 1509 207 81 6 chr3 41077558 41077906 -186446672 - MLT1A2 LTR MaLR 0 374 1 838 245 78 96 chr3 41077906 41077986 -186446592 - L1MC4a LINE L1 -2146 5662 5582 447 133 13 13 chr3 41078898 41078973 -186445605 - FLAM SINE Alu -18 125 51 801 142 25 0 chr3 41078999 41079119 -186445459 - FLAM_C SINE Alu -20 123 1 1444 195 21 17 chr3 41080105 41080392 -186444186 - AluJo SINE Alu -24 288 1 483 71 61 0 chr3 41083390 41083488 -186441090 + (TCTA)n Simple_repeat Simple_repeat 2 105 0 1031 149 30 1 chr3 41083550 41083844 -186440734 - MER2 DNA MER2_type -6 339 2 271 320 64 16 chr3 41084178 41084303 -186440275 + MIR3 SINE MIR 24 154 -54 384 195 22 54 chr3 41085387 41085572 -186439006 + G-rich Low_complexity Low_complexity 2 180 0 30 45 0 0 chr3 41085572 41085616 -186438962 + GC_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr3 41085688 41085718 -186438860 + GC_rich Low_complexity Low_complexity 1 30 0 30 83 0 0 chr3 41085747 41085819 -186438759 + GC_rich Low_complexity Low_complexity 1 72 0 3120 49 10 0 chr3 41086343 41086731 -186437847 - L1PA4 LINE L1 0 6155 5764 236 204 19 39 chr3 41086847 41086950 -186437628 + C-rich Low_complexity Low_complexity 1 101 0 486 308 12 23 chr3 41087005 41087177 -186437401 + C-rich Low_complexity Low_complexity 3 172 0 240 309 0 68 chr3 41087208 41087399 -186437179 + CT-rich Low_complexity Low_complexity 2 179 0 674 230 106 38 chr3 41089399 41089738 -186434840 + HAL1 LINE L1 1180 1541 -966 2104 125 3 13 chr3 41089740 41090051 -186434527 + AluSc SINE Alu 1 308 -1 474 297 169 38 chr3 41090099 41090544 -186434034 + MLT1J LTR MaLR 1 503 -8 1348 221 59 27 chr3 41093070 41093441 -186431137 - MLT1D LTR MaLR -3 502 120 825 287 91 51 chr3 41093874 41094449 -186430129 + L2 LINE L2 2709 3313 0 230 316 112 0 chr3 41094573 41094671 -186429907 - L2 LINE L2 -469 2845 2737 1360 230 60 0 chr3 41094676 41095007 -186429571 - L1MC4 LINE L1 -194 7848 7498 1011 245 3 52 chr3 41095154 41095464 -186429114 - L1ME1 LINE L1 -5 6161 5867 717 247 71 24 chr3 41095672 41096008 -186428570 + HAL1 LINE L1 796 1147 -1360 247 257 17 21 chr3 41096010 41096159 -186428419 + G-rich Low_complexity Low_complexity 4 236 0 30 59 0 0 chr3 41097401 41097452 -186427126 + GC_rich Low_complexity Low_complexity 1 51 0 1226 154 28 5 chr3 41099536 41099750 -186424828 - MER20 DNA MER1_type 0 219 1 26 0 0 0 chr3 41100234 41100260 -186424318 + AT_rich Low_complexity Low_complexity 1 26 0 469 264 16 23 chr3 41100428 41100557 -186424021 - MIR SINE MIR -103 159 32 189 107 0 0 chr3 41100911 41100939 -186423639 + (A)n Simple_repeat Simple_repeat 1 28 0 41 77 0 23 chr3 41101500 41101630 -186422948 + GC_rich Low_complexity Low_complexity 1 127 0 300 302 23 39 chr3 41102020 41102149 -186422429 + L2 LINE L2 3116 3242 -30 195 267 47 23 chr3 41103264 41103350 -186421228 + MIR3 SINE MIR 115 202 -6 783 299 100 18 chr3 41104127 41104468 -186420110 - MLT1H LTR MaLR -13 536 168 1529 175 25 35 chr3 41104602 41104887 -186419691 + AluJo SINE Alu 27 308 -4 2455 133 25 7 chr3 41104887 41105322 -186419256 + L1MB3 LINE L1 5557 5999 -184 1194 96 0 0 chr3 41105450 41105607 -186418971 + (C)n Simple_repeat Simple_repeat 1 157 0 280 137 34 60 chr3 41105614 41105731 -186418847 + (CGGG)n Simple_repeat Simple_repeat 4 117 0 * 371 188 22 39 chr3 41105697 41105878 -186418700 + (CGCGG)n Simple_repeat Simple_repeat 2 179 0 235 226 23 23 chr3 41105897 41106030 -186418548 + (CCCCG)n Simple_repeat Simple_repeat 4 136 0 366 260 84 32 chr3 41106459 41106613 -186417965 - HsTC2 DNA Tc2 -3 1895 16 31 92 0 0 chr3 41106743 41106830 -186417748 + GC_rich Low_complexity Low_complexity 1 87 0 23 54 0 0 chr3 41106850 41106887 -186417691 + GC_rich Low_complexity Low_complexity 1 37 0 21 71 0 0 chr3 41106931 41106973 -186417605 + GC_rich Low_complexity Low_complexity 1 42 0 240 35 0 0 chr3 41107091 41107120 -186417458 + (CCCCCT)n Simple_repeat Simple_repeat 2 30 0 989 76 7 0 chr3 41107481 41107625 -186416953 - L1MB4 LINE L1 0 6180 6036 186 359 47 19 chr3 41107627 41107733 -186416845 - L2 LINE L2 -5 3308 3200 707 276 0 0 chr3 41107950 41108095 -186416483 - MER63A DNA MER1_type -11 199 55 246 196 232 0 chr3 41108994 41109050 -186415528 + MER58 DNA MER1_type 1 69 -2351 1983 171 0 0 chr3 41110142 41110446 -186414132 - AluJb SINE Alu -8 304 1 88 35 0 0 chr3 41110647 41110763 -186413815 + GC_rich Low_complexity Low_complexity 1 116 0 349 234 0 0 chr3 41110787 41110898 -186413680 + G-rich Low_complexity Low_complexity 1 111 0 1037 209 119 4 chr3 41162347 41162615 -186361963 + MLT1E3 LTR MaLR 326 624 0 26 0 0 0 chr3 41164375 41164401 -186360177 + AT_rich Low_complexity Low_complexity 1 26 0 1542 192 19 6 chr3 41164579 41164892 -186359686 - MLT1A1 LTR MaLR 0 365 49 347 280 125 22 chr3 41164999 41165451 -186359127 + HAL1 LINE L1 1344 1896 -611 384 216 10 10 chr3 41165752 41165849 -186358729 + MLT1J2 LTR MaLR 79 175 -275 285 193 14 14 chr3 41165943 41166025 -186358553 + MLT1J2 LTR MaLR 309 428 -19 710 245 19 39 chr3 41166051 41166259 -186358319 + MIR SINE MIR 1 204 -58 861 174 78 6 chr3 41166298 41166465 -186358113 - MSTD LTR MaLR 0 396 218 626 217 102 66 chr3 41166620 41166864 -186357714 - MSTD LTR MaLR -138 258 6 322 231 111 60 chr3 41168216 41168333 -186356245 + L2 LINE L2 3185 3307 -6 3469 172 10 30 chr3 41169645 41170348 -186354230 + L1PB4 LINE L1 5467 6155 -1 243 262 16 0 chr3 41170482 41170543 -186354035 + L2 LINE L2 2990 3051 -221 25 31 0 0 chr3 41171054 41171086 -186353492 + AT_rich Low_complexity Low_complexity 1 32 0 264 253 200 0 chr3 41171724 41171819 -186352759 - MIR SINE MIR -40 222 109 335 292 73 22 chr3 41171886 41172023 -186352555 + MIR3 SINE MIR 3 146 -62 221 239 0 14 chr3 41172148 41172219 -186352359 + CT-rich Low_complexity Low_complexity 4 73 0 420 281 90 9 chr3 41172478 41172890 -186351688 + L1ME LINE L1 5066 5513 -649 759 200 0 7 chr3 41173296 41173431 -186351147 - AluJo SINE Alu -178 134 1 10034 131 5 11 chr3 41174393 41176002 -186348576 + L1PA12 LINE L1 1426 3024 -4557 721 92 17 0 chr3 41177079 41177199 -186347379 + (GA)n Simple_repeat Simple_repeat 2 123 0 1251 218 17 9 chr3 41177586 41177934 -186346644 - L1M4 LINE L1 -946 5200 4850 8623 62 1 3 chr3 41177935 41179075 -186345503 + L1P LINE L1 1 1138 -5008 7491 35 1 0 chr3 41179175 41180591 -186343987 + L1PA4 LINE L1 4736 6152 -3 24 0 0 0 chr3 41180591 41180615 -186343963 + AT_rich Low_complexity Low_complexity 1 24 0 16515 36 1 0 chr3 41181215 41183338 -186341240 - L1P LINE L1 -1397 4749 2625 20196 83 12 0 chr3 41183438 41186301 -186338277 + L1P LINE L1 100 2996 -3150 1895 139 29 0 chr3 41186468 41186778 -186337800 - AluSx SINE Alu 0 318 1 300 313 0 31 chr3 41186860 41186956 -186337622 + L2 LINE L2 3195 3287 -26 257 231 0 0 chr3 41187422 41187487 -186337091 - L1ME4a LINE L1 -4 6117 6053 204 287 319 0 chr3 41187936 41188030 -186336548 - L2 LINE L2 0 3272 3149 1847 151 3 11 chr3 41188732 41189016 -186335562 + AluJo SINE Alu 1 282 -30 32 0 0 0 chr3 41189975 41190007 -186334571 + AT_rich Low_complexity Low_complexity 1 32 0 2058 93 29 11 chr3 41190154 41190459 -186334119 + AluSp SINE Alu 1 310 0 22 56 0 0 chr3 41190490 41190526 -186334052 + AT_rich Low_complexity Low_complexity 1 36 0 2003 154 28 6 chr3 41190624 41190981 -186333597 + MLT1A1 LTR MaLR 1 365 0 29 28 0 0 chr3 41191509 41191545 -186333033 + AT_rich Low_complexity Low_complexity 1 36 0 248 258 16 0 chr3 41191787 41191849 -186332729 - L1ME LINE L1 -492 5629 5567 1228 249 101 8 chr3 41192027 41192392 -186332186 - LTR16A LTR ERVL 0 450 52 2271 103 0 0 chr3 41194153 41194454 -186330124 - AluSg SINE Alu -9 301 1 356 315 63 0 chr3 41195216 41195359 -186329219 - MIR3 SINE MIR -12 196 45 960 305 53 8 chr3 41195439 41196075 -186328503 - L1MEc LINE L1 -2982 3147 2483 1047 187 42 0 chr3 41196179 41196393 -186328185 + MLT1A1 LTR MaLR 143 365 0 303 290 45 52 chr3 41196400 41196690 -186327888 - L1MEc LINE L1 -3749 2380 2093 2336 74 40 0 chr3 41196719 41197018 -186327560 - AluY SINE Alu 0 311 1 1727 148 7 49 chr3 41197278 41197437 -186327141 - AluJo SINE Alu -21 291 127 247 24 24 24 chr3 41197437 41197478 -186327100 + (TTTA)n Simple_repeat Simple_repeat 1 41 0 1908 151 11 0 chr3 41197478 41197757 -186326821 - AluJb SINE Alu -30 282 1 1727 148 7 49 chr3 41197757 41197900 -186326678 - AluJo SINE Alu -183 129 1 613 326 91 34 chr3 41198011 41198541 -186326037 - L1MEc LINE L1 -4585 1725 1166 265 281 84 86 chr3 41198563 41199345 -186325233 - L1MEc LINE L1 -5100 1019 239 485 276 119 25 chr3 41199785 41200147 -186324431 + L1ME LINE L1 5405 5800 -321 22 56 0 0 chr3 41200190 41200226 -186324352 + AT_rich Low_complexity Low_complexity 1 36 0 286 238 168 19 chr3 41200405 41200619 -186323959 + L1ME4a LINE L1 5765 6010 -111 976 305 125 54 chr3 41203158 41203763 -186320815 - L1MC/D LINE L1 -803 5343 4783 198 0 0 0 chr3 41203763 41203785 -186320793 + (TA)n Simple_repeat Simple_repeat 2 23 0 976 305 125 54 chr3 41203785 41204506 -186320072 - L1MC/D LINE L1 -1363 4783 4060 249 255 0 31 chr3 41204561 41204659 -186319919 - L1MC/D LINE L1 -2192 3954 3860 816 172 0 0 chr3 41204700 41204828 -186319750 - FLAM_A SINE Alu -5 128 1 1139 208 61 20 chr3 41205043 41205389 -186319189 - L1MB7 LINE L1 0 6995 6636 1484 219 0 0 chr3 41205394 41205705 -186318873 - L1MB7 LINE L1 -467 6510 6200 1931 199 8 3 chr3 41205712 41206103 -186318475 + MER70B LTR ERVL 186 578 0 5705 236 45 45 chr3 41206107 41207397 -186317181 - L1MB7 LINE L1 -1951 5006 3718 10835 85 5 29 chr3 41207397 41209045 -186315533 + L1PA7 LINE L1 3836 5460 -694 1587 124 26 4 chr3 41209045 41209271 -186315307 + AluSc SINE Alu 1 231 -78 10835 85 5 29 chr3 41209271 41209947 -186314631 + L1PA7 LINE L1 5460 6151 -3 5705 236 45 45 chr3 41209947 41211339 -186313239 - L1MB7 LINE L1 -3239 3718 2361 24 0 0 0 chr3 41211353 41211377 -186313201 + AT_rich Low_complexity Low_complexity 1 24 0 1604 259 69 19 chr3 41211414 41212209 -186312369 - L1MB7 LINE L1 -4833 2022 1188 1935 139 17 0 chr3 41212221 41212516 -186312062 - AluSx SINE Alu -12 300 1 379 275 46 34 chr3 41213083 41213301 -186311277 - L1MB7 LINE L1 -6314 541 11 208 244 0 0 chr3 41216284 41216329 -186308249 + (CA)n Simple_repeat Simple_repeat 1 45 0 600 254 67 12 chr3 41218022 41218187 -186306391 - MIR SINE MIR -7 255 82 1385 185 120 0 chr3 41218595 41218854 -186305724 - AluJb SINE Alu -22 290 1 325 288 48 0 chr3 41220459 41220584 -186303994 + MIR SINE MIR 121 251 -11 324 355 87 7 chr3 41222906 41223044 -186301534 - L2 LINE L2 0 3272 3124 459 0 0 0 chr3 41223137 41223188 -186301390 + (TG)n Simple_repeat Simple_repeat 2 52 0 260 83 0 0 chr3 41223494 41223530 -186301048 - Alu SINE Alu -266 36 1 891 151 22 22 chr3 41223583 41223768 -186300810 + MER53 DNA DNA 4 188 -1 200 135 27 0 chr3 41224088 41224125 -186300453 + (TA)n Simple_repeat Simple_repeat 2 39 0 789 233 50 80 chr3 41224131 41224431 -186300147 - L2 LINE L2 0 3313 3023 21 0 0 0 chr3 41224431 41224452 -186300126 + AT_rich Low_complexity Low_complexity 1 21 0 1153 151 9 24 chr3 41224541 41224753 -186299825 - SVA Other Other -746 640 432 1785 298 58 67 chr3 41224753 41225603 -186298975 - L2 LINE L2 -268 3045 2206 497 245 28 14 chr3 41225606 41225749 -186298829 + LTR16A1 LTR ERVL 12 156 -301 627 253 50 10 chr3 41225806 41226004 -186298574 + LTR16A1 LTR ERVL 248 453 -4 254 186 0 0 chr3 41226657 41226716 -186297862 - L1MA5A LINE L1 0 6297 6239 37 0 0 0 chr3 41227952 41227989 -186296589 + AT_rich Low_complexity Low_complexity 1 37 0 38647 70 4 2 chr3 41228017 41234153 -186290425 - L1PA5 LINE L1 -2 6152 3 2953 115 0 2 chr3 41234152 41234614 -186289964 - L1MA5A LINE L1 -46 6251 5791 * 4385 166 3 32 chr3 41234618 41235551 -186289027 + L1 LINE L1 4252 5157 -989 1382 209 59 30 chr3 41235559 41235985 -186288593 - L1ME3 LINE L1 -1 6161 5724 233 29 29 0 chr3 41236105 41236139 -186288439 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 10557 35 1 1 chr3 41236142 41238192 -186286386 - L1PA3 LINE L1 -3 6152 4102 4954 63 1 0 chr3 41238201 41238852 -186285726 - L1P LINE L1 -5486 660 9 343 359 35 7 chr3 41238864 41239006 -186285572 - MIR3 SINE MIR -62 146 1 318 264 13 14 chr3 41240017 41240106 -186284472 - MIR SINE MIR -97 111 30 3900 197 11 36 chr3 41240773 41240994 -186283584 - L1MB4 LINE L1 -1 6179 5954 2121 70 0 0 chr3 41240994 41241251 -186283327 - AluY SINE Alu -11 300 44 1587 203 0 37 chr3 41241251 41241545 -186283033 - AluJb SINE Alu -27 285 1 3900 197 11 36 chr3 41241545 41242268 -186282310 - L1MB4 LINE L1 -224 5956 5258 37978 49 1 0 chr3 41242390 41248521 -186276057 + L1PA4 LINE L1 14 6148 -7 12717 119 15 3 chr3 41248620 41250638 -186273940 - Tigger1 DNA MER2_type 0 2418 377 471 311 106 17 chr3 41251086 41251266 -186273312 - MIR SINE MIR -44 218 23 455 286 53 8 chr3 41251593 41251726 -186272852 + MIR SINE MIR 36 174 -88 317 342 87 5 chr3 41252778 41252962 -186271616 + L2 LINE L2 2538 2736 -578 1176 247 60 8 chr3 41253009 41253393 -186271185 - LTR16C LTR ERVL -1 490 87 387 398 91 24 chr3 41253485 41253902 -186270676 + L2 LINE L2 2804 3248 -24 234 116 0 0 chr3 41254148 41254191 -186270387 + (CA)n Simple_repeat Simple_repeat 2 44 0 210 324 14 28 chr3 41254217 41254359 -186270219 + GA-rich Low_complexity Low_complexity 5 144 0 1068 211 175 14 chr3 41255145 41255589 -186268989 + LTR50 LTR ERVL 1 372 -423 501 226 9 17 chr3 41255589 41255704 -186268874 - MER81 DNA DNA 0 114 1 1068 211 175 14 chr3 41255704 41255837 -186268741 + LTR50 LTR ERVL 372 787 -8 292 279 180 18 chr3 41256068 41256179 -186268399 - MIR SINE MIR -85 177 49 260 239 65 33 chr3 41256929 41257021 -186267557 + MIR SINE MIR 90 184 -78 1318 239 72 21 chr3 41257190 41257521 -186267057 - MLT1E LTR MaLR -40 553 206 1767 181 20 0 chr3 41257694 41257987 -186266591 + AluJo SINE Alu 1 299 -13 431 186 159 28 chr3 41258018 41258163 -186266415 - MLT1E LTR MaLR -385 164 1 273 254 16 0 chr3 41259059 41259122 -186265456 + MIR SINE MIR 89 152 -56 408 247 50 85 chr3 41260001 41260206 -186264372 - MIR SINE MIR -62 146 3 196 300 8 75 chr3 41260206 41260314 -186264264 - L2 LINE L2 -629 2685 2586 212 345 83 36 chr3 41260308 41260505 -186264073 + L2 LINE L2 2016 2229 -1085 2293 83 0 7 chr3 41260505 41260805 -186263773 - AluSg SINE Alu -12 298 1 212 345 83 36 chr3 41260805 41260859 -186263719 + L2 LINE L2 2229 2279 -1035 1009 315 50 38 chr3 41260859 41261380 -186263198 + L2 LINE L2 1531 2057 -1257 225 308 48 39 chr3 41261416 41261520 -186263058 + L2 LINE L2 2212 2316 -998 1648 136 4 19 chr3 41261630 41261887 -186262691 - AluSx SINE Alu -3 309 57 235 235 0 87 chr3 41262234 41262349 -186262229 + T-rich Low_complexity Low_complexity 2 106 0 415 273 246 8 chr3 41262371 41262635 -186261943 + LTR16A1 LTR ERVL 5 331 -126 2019 102 13 3 chr3 41262673 41262976 -186261602 - L1MA3 LINE L1 -7 6298 5993 5582 194 23 10 chr3 41262976 41264370 -186260208 - L1M1 LINE L1 -2579 4986 3572 35918 82 12 11 chr3 41264384 41268163 -186256415 - L1PA6 LINE L1 -2 6152 2380 2941 135 49 6 chr3 41268163 41268651 -186255927 + MER9 LTR ERVK 1 509 -2 35918 82 12 11 chr3 41268651 41271023 -186253555 - L1PA6 LINE L1 -3774 2380 12 6756 113 23 16 chr3 41271035 41272244 -186252334 - L1M1 LINE L1 -3986 3579 2363 * 8733 154 18 10 chr3 41272243 41273727 -186250851 - L1M1 LINE L1 -6053 1512 18 589 232 49 0 chr3 41273736 41273878 -186250700 + LTR16A1 LTR ERVL 309 457 0 341 187 41 140 chr3 41274502 41274673 -186249905 + MER103 DNA DNA 1 154 -12 293 200 0 0 chr3 41274780 41274835 -186249743 - L1PA15-16 LINE L1 -3905 2944 2890 8289 135 60 6 chr3 41274842 41275426 -186249152 + L1PA11 LINE L1 3979 4530 -1644 2156 103 14 3 chr3 41275426 41275717 -186248861 + AluY SINE Alu 1 294 -17 8289 135 60 6 chr3 41275717 41277280 -186247298 + L1PA11 LINE L1 4530 6169 -5 1884 223 32 34 chr3 41277352 41277858 -186246720 - MLT1D LTR MaLR 0 505 1 290 350 43 43 chr3 41278592 41278778 -186245800 + MIR3 SINE MIR 12 197 -11 480 35 0 0 chr3 41279701 41279759 -186244819 + (CAA)n Simple_repeat Simple_repeat 2 59 0 379 276 38 9 chr3 41280111 41280216 -186244362 + MIR SINE MIR 32 139 -123 369 309 75 16 chr3 41281423 41281611 -186242967 + MIR SINE MIR 64 262 0 1258 230 64 4 chr3 41281835 41282120 -186242458 + AluJo SINE Alu 1 301 0 8401 209 46 17 chr3 41282271 41285618 -186238960 + L1PB4 LINE L1 2621 6078 -78 2050 67 63 8 chr3 41285618 41285919 -186238659 + AluY SINE Alu 1 316 0 8401 209 46 17 chr3 41285919 41285999 -186238579 + L1PB4 LINE L1 6078 6154 -2 249 83 0 0 chr3 41286085 41286121 -186238457 + (A)n Simple_repeat Simple_repeat 1 36 0 240 59 0 0 chr3 41286168 41286202 -186238376 + (TG)n Simple_repeat Simple_repeat 1 34 0 480 309 39 52 chr3 41286391 41286621 -186237957 - MIR SINE MIR -4 258 32 1052 249 81 38 chr3 41287352 41287849 -186236729 - HAL1b LINE L1 -468 880 363 452 321 71 45 chr3 41287873 41288184 -186236394 - HAL1b LINE L1 -1027 321 3 23 54 0 0 chr3 41288316 41288353 -186236225 + AT_rich Low_complexity Low_complexity 1 37 0 978 137 20 85 chr3 41288353 41288601 -186235977 - L1MB2 LINE L1 -2 6169 5938 922 158 59 34 chr3 41288701 41288911 -186235667 + THE1C LTR MaLR 180 375 0 3271 167 37 19 chr3 41288911 41289818 -186234760 - L1MB2 LINE L1 -250 5933 5019 400 293 30 23 chr3 41290642 41290775 -186233803 + MIR SINE MIR 24 157 -105 * 474 252 150 7 chr3 41290768 41290915 -186233663 - MIR SINE MIR 0 262 95 226 254 16 0 chr3 41290987 41291050 -186233528 + MIR SINE MIR 154 217 -45 2245 144 48 26 chr3 41291067 41291483 -186233095 + MSTB1 LTR MaLR 8 432 0 2258 178 96 15 chr3 41292126 41292655 -186231923 + LTR49 LTR ERV1 1 572 -23 1605 185 158 44 chr3 41292854 41293335 -186231243 + LTR10A LTR ERV1 13 548 -61 1174 213 49 31 chr3 41294757 41295350 -186229228 + MLT1E1 LTR MaLR 2 593 0 408 208 169 82 chr3 41295960 41296143 -186228435 + MIR SINE MIR 63 261 -1 298 301 49 35 chr3 41296157 41296300 -186228278 - L2 LINE L2 -213 3059 2915 434 255 87 13 chr3 41297589 41297738 -186226840 + L2 LINE L2 3154 3313 0 288 0 0 0 chr3 41298496 41298528 -186226050 + (T)n Simple_repeat Simple_repeat 1 32 0 269 246 0 0 chr3 41299045 41299106 -186225472 + MIR SINE MIR 58 118 -144 239 275 0 58 chr3 41299257 41299326 -186225252 + L2 LINE L2 3207 3271 -1 185 292 62 31 chr3 41300003 41300099 -186224479 + L2 LINE L2 1840 1938 -1376 500 214 104 32 chr3 41300176 41300330 -186224248 + MLT1J2 LTR MaLR 281 445 -5 197 390 11 0 chr3 41301803 41301898 -186222680 - MIR SINE MIR -79 183 88 235 276 0 41 chr3 41302225 41302323 -186222255 + MARNA DNA Mariner 141 234 -352 325 141 0 16 chr3 41302986 41303050 -186221528 - MER116 DNA Mariner -17 63 1 2147 231 83 0 chr3 41303252 41303785 -186220793 + MLT1G LTR MaLR 14 590 0 40 21 0 0 chr3 41304128 41304175 -186220403 + AT_rich Low_complexity Low_complexity 1 47 0 1036 158 100 32 chr3 41304175 41304365 -186220213 - AluJb SINE Alu -25 287 85 335 249 83 126 chr3 41304374 41304795 -186219783 - L1ME4a LINE L1 -12 6109 5707 195 129 0 0 chr3 41304924 41304955 -186219623 + (CA)n Simple_repeat Simple_repeat 2 32 0 189 0 0 0 chr3 41305329 41305350 -186219228 + (T)n Simple_repeat Simple_repeat 1 21 0 392 322 166 19 chr3 41305723 41305928 -186218650 + MIR SINE MIR 22 256 -6 21 57 0 0 chr3 41305950 41305985 -186218593 + AT_rich Low_complexity Low_complexity 1 35 0 1789 54 4 0 chr3 41305985 41306224 -186218354 - L1PA7 LINE L1 0 6154 5915 688 71 0 0 chr3 41306325 41306423 -186218155 + AluY SINE Alu 214 311 0 1836 27 0 0 chr3 41306423 41306647 -186217931 - L1P3 LINE L1 -455 5699 5476 1717 101 0 0 chr3 41306657 41306885 -186217693 - AluSg SINE Alu -82 228 1 1409 226 36 10 chr3 41307282 41307407 -186217171 + AluJo SINE Alu 1 121 -191 240 35 0 0 chr3 41307407 41307436 -186217142 + (TAAAA)n Simple_repeat Simple_repeat 5 33 0 1409 226 36 10 chr3 41307436 41307611 -186216967 + AluJo SINE Alu 121 309 -3 1999 145 17 26 chr3 41308345 41308696 -186215882 - MER7A DNA MER2_type 0 346 1 372 301 53 60 chr3 41309079 41309317 -186215261 - MIR SINE MIR -6 256 5 180 381 36 0 chr3 41310645 41310729 -186213849 - L2 LINE L2 -1 3312 3226 978 204 0 32 chr3 41311662 41311878 -186212700 - MER3 DNA MER1_type 0 209 1 1065 121 0 0 chr3 41312095 41312260 -186212318 + (TTTC)n Simple_repeat Simple_repeat 2 166 0 414 239 133 37 chr3 41312547 41312735 -186211843 - MIR SINE MIR -11 251 46 866 299 45 27 chr3 41313610 41314052 -186210526 - L1ME3A LINE L1 -222 6446 5997 762 125 0 0 chr3 41314089 41314193 -186210385 + L1PA8A LINE L1 6010 6113 -18 252 0 0 0 chr3 41314202 41314230 -186210348 + (TA)n Simple_repeat Simple_repeat 2 29 0 3579 233 64 14 chr3 41314231 41315382 -186209196 - L1ME3A LINE L1 -1287 5357 4149 2509 231 33 17 chr3 41315404 41316184 -186208394 - L1ME3A LINE L1 -4835 1707 915 1063 179 39 5 chr3 41316679 41316886 -186207692 + MER20 DNA MER1_type 1 214 -5 1215 152 31 121 chr3 41316908 41317289 -186207289 - MLT1A1 LTR MaLR 0 365 19 1964 65 0 16 chr3 41317528 41317846 -186206732 - AluY SINE Alu 0 352 39 23 33 0 0 chr3 41318173 41318203 -186206375 + AT_rich Low_complexity Low_complexity 1 30 0 503 46 0 0 chr3 41319239 41319304 -186205274 - L1PA8A LINE L1 -265 5866 5802 23 0 0 0 chr3 41319545 41319568 -186205010 + AT_rich Low_complexity Low_complexity 1 23 0 6023 89 3 12 chr3 41319568 41320863 -186203715 - L1PA8 LINE L1 -8 6880 5559 13373 102 102 11 chr3 41320863 41323147 -186201431 - L1PA8 LINE L1 -4207 2656 164 423 170 80 20 chr3 41325542 41325642 -186198936 - MER5C DNA MER1_type -5 319 214 600 203 15 0 chr3 41325660 41325793 -186198785 + L1MD3 LINE L1 7842 7976 -19 617 202 138 11 chr3 41325800 41325988 -186198590 - MER5C DNA MER1_type -92 232 21 195 332 32 86 chr3 41326310 41326497 -186198081 - L2 LINE L2 -140 3132 2956 1140 184 88 94 chr3 41326885 41326977 -186197601 + MLT1C LTR MaLR 10 101 -366 2325 84 3 37 chr3 41326977 41327299 -186197279 + AluY SINE Alu 1 311 0 1140 184 88 94 chr3 41327299 41327663 -186196915 + MLT1C LTR MaLR 101 463 -4 228 135 0 0 chr3 41327934 41327971 -186196607 + (TCC)n Simple_repeat Simple_repeat 3 39 0 236 191 63 16 chr3 41328490 41328553 -186196025 - MLT1K LTR MaLR -23 565 500 293 175 0 0 chr3 41329107 41329164 -186195414 - MLT2B1 LTR ERVL 0 520 464 213 139 0 0 chr3 41329178 41329221 -186195357 + (TCTA)n Simple_repeat Simple_repeat 2 44 0 1265 187 159 89 chr3 41329221 41329649 -186194929 - MLT2B1 LTR ERVL -62 458 1 430 256 48 62 chr3 41330203 41330368 -186194210 + MIR3 SINE MIR 43 207 -1 304 296 96 0 chr3 41331094 41331209 -186193369 + L1ME4a LINE L1 5975 6100 -21 2003 146 19 21 chr3 41332288 41332664 -186191914 + THE1C LTR MaLR 1 375 0 322 373 55 41 chr3 41332782 41333074 -186191504 + L2 LINE L2 2969 3264 -8 419 281 0 0 chr3 41334514 41334610 -186189968 - MIR3 SINE MIR -32 176 81 350 238 32 0 chr3 41334837 41334924 -186189654 - MIR SINE MIR -65 143 71 290 267 69 46 chr3 41335264 41335481 -186189097 - HAL1 LINE L1 -22 2485 2264 338 246 56 56 chr3 41335634 41335776 -186188802 - HAL1b LINE L1 -457 891 750 2159 123 10 0 chr3 41336134 41336436 -186188142 - AluSg SINE Alu -5 305 1 387 323 80 30 chr3 41336578 41336779 -186187799 - HAL1 LINE L1 -753 1754 1544 665 283 118 31 chr3 41336779 41337193 -186187385 - LTR16A LTR ERVL 0 450 1 485 266 51 51 chr3 41337295 41337453 -186187125 - MER91A DNA MER1_type -19 177 20 1520 188 105 3 chr3 41338464 41338815 -186185763 + MLT1B LTR MaLR 4 390 0 198 217 17 67 chr3 41339471 41339531 -186185047 + MIR SINE MIR 68 124 -138 21 0 0 0 chr3 41339800 41339821 -186184757 + AT_rich Low_complexity Low_complexity 1 21 0 220 200 22 0 chr3 41339838 41339883 -186184695 + L2 LINE L2 3264 3309 -4 24 0 0 0 chr3 41339929 41339953 -186184625 + AT_rich Low_complexity Low_complexity 1 24 0 1930 159 47 0 chr3 41341017 41341338 -186183240 + Tigger7 DNA MER2_type 1 336 -2151 330 182 26 26 chr3 41341438 41341515 -186183063 + MLT2F LTR ERVL 587 663 0 269 250 22 22 chr3 41341629 41341721 -186182857 + (CAT)n Simple_repeat Simple_repeat 2 93 0 183 387 0 0 chr3 41341742 41341804 -186182774 - MIR SINE MIR -115 93 32 228 306 22 82 chr3 41341817 41342000 -186182578 + L2 LINE L2 688 859 -2455 2088 139 0 16 chr3 41342140 41342443 -186182135 - AluSx SINE Alu -14 298 1 2265 117 0 0 chr3 41342925 41343233 -186181345 - AluSx SINE Alu -4 308 1 1085 138 12 0 chr3 41343358 41343518 -186181060 + AluSq SINE Alu 143 304 -9 2522 214 30 22 chr3 41343524 41344196 -186180382 + L1ME2 LINE L1 5487 6163 -1 589 290 62 9 chr3 41344923 41345147 -186179431 + LTR16C LTR ERVL 253 488 -3 316 331 44 52 chr3 41345980 41346182 -186178396 + MIR SINE MIR 6 209 -53 1253 212 90 20 chr3 41346187 41346631 -186177947 - Charlie4a DNA MER1_type 0 508 34 542 221 33 0 chr3 41347075 41347197 -186177381 - MER63A DNA MER1_type -33 177 52 456 182 40 0 chr3 41347617 41347716 -186176862 - MER58 DNA MER1_type 0 2420 2318 246 305 9 67 chr3 41347713 41347818 -186176760 - MER58 DNA MER1_type -242 99 1 * 370 211 84 0 chr3 41348027 41348122 -186176456 - MER103 DNA DNA -51 115 13 1220 149 22 26 chr3 41348544 41348772 -186175806 - L1PA8 LINE L1 0 6172 5946 1075 224 204 2 chr3 41349144 41349725 -186174853 - LTR50 LTR ERVL 0 795 4 228 280 27 27 chr3 41350348 41350423 -186174155 + MIR SINE MIR 48 122 -140 623 305 111 4 chr3 41350873 41351099 -186173479 - MIR SINE MIR -10 252 3 241 330 198 30 chr3 41351172 41351369 -186173209 - MIR SINE MIR -15 247 18 2492 66 0 3 chr3 41352001 41352306 -186172272 + AluY SINE Alu 1 304 -7 285 128 0 0 chr3 41353028 41353075 -186171503 + (CCCA)n Simple_repeat Simple_repeat 2 48 0 2162 117 10 0 chr3 41353144 41353444 -186171134 - AluSq SINE Alu -10 303 1 231 321 46 84 chr3 41353507 41353638 -186170940 - L2 LINE L2 0 3272 3147 1243 250 22 112 chr3 41353651 41354187 -186170391 + L2 LINE L2 2824 3311 -2 321 267 111 0 chr3 41355778 41355868 -186168710 + L2 LINE L2 3163 3262 -10 192 77 0 0 chr3 41355870 41355896 -186168682 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 252 371 72 42 chr3 41355911 41356148 -186168430 + L2 LINE L2 3025 3268 -4 284 300 146 18 chr3 41356370 41356700 -186167878 - L1ME LINE L1 -253 5868 5497 591 267 30 79 chr3 41358724 41359027 -186165551 + LTR16A1 LTR ERVL 166 453 -4 328 218 103 0 chr3 41359038 41359116 -186165462 - MIR SINE MIR -70 192 107 2403 175 75 46 chr3 41409888 41410384 -186114194 - MER67D LTR ERV1 -4 510 1 208 253 93 0 chr3 41411033 41411108 -186113470 - MIR SINE MIR -121 141 60 1984 84 247 167 chr3 41411179 41411717 -186112861 + LTR12 LTR ERV1 1 581 -133 831 255 77 21 chr3 41412430 41412665 -186111913 - LTR67 LTR ERVL -2 555 308 1941 98 19 0 chr3 41412723 41412989 -186111589 - L1PA13 LINE L1 0 6163 5893 223 219 61 73 chr3 41412994 41413076 -186111502 - MIR SINE MIR -111 151 71 305 282 82 0 chr3 41413076 41413186 -186111392 + L2 LINE L2 3191 3309 -4 24 0 0 0 chr3 41413342 41413366 -186111212 + AT_rich Low_complexity Low_complexity 1 24 0 241 221 0 0 chr3 41414623 41414691 -186109887 - L1MC4 LINE L1 -1339 6703 6636 523 302 47 21 chr3 41414856 41415048 -186109530 + LTR16C LTR ERVL 268 464 -27 2220 262 49 50 chr3 41415059 41415386 -186109192 - MER21B LTR ERV1 -109 754 428 2334 144 31 25 chr3 41415386 41415746 -186108832 - THE1B LTR MaLR -2 362 1 2220 262 49 50 chr3 41415746 41416173 -186108405 - MER21B LTR ERV1 -435 428 1 22 35 0 0 chr3 41417558 41417587 -186106991 + AT_rich Low_complexity Low_complexity 1 29 0 306 292 24 23 chr3 41417744 41417881 -186106697 - L1P3 LINE L1 -368 5786 5647 196 272 184 0 chr3 41417935 41418038 -186106540 - MIR SINE MIR -66 142 21 203 367 11 0 chr3 41418816 41418906 -186105672 - L2 LINE L2 -239 3033 2943 2723 224 40 3 chr3 41419384 41420006 -186104572 - L1ME3 LINE L1 -4 6158 5514 30 0 0 0 chr3 41420562 41420592 -186103986 + AT_rich Low_complexity Low_complexity 1 30 0 4458 81 21 5 chr3 41420592 41421196 -186103382 - L1MA1 LINE L1 -10 6292 5679 850 170 13 156 chr3 41421296 41421390 -186103188 - L1MA1 LINE L1 -784 5362 5256 297 73 24 0 chr3 41421390 41421431 -186103147 + MADE1 DNA Mariner 1 42 -38 850 170 13 156 chr3 41421431 41421656 -186102922 - L1MA1 LINE L1 -890 5256 5042 1244 276 111 13 chr3 41421972 41422574 -186102004 - HAL1b LINE L1 -278 1070 410 506 270 127 51 chr3 41422922 41423231 -186101347 - L1MEc LINE L1 -4445 1802 1518 2149 185 26 24 chr3 41423231 41423648 -186100930 + LTR52 LTR ERVL 1 418 -3 506 270 127 51 chr3 41423648 41423789 -186100789 - L1MEc LINE L1 -4729 1518 1389 2083 126 0 10 chr3 41423789 41424083 -186100495 + AluSc SINE Alu 3 293 -16 506 270 127 51 chr3 41424083 41424561 -186100017 - L1MEc LINE L1 -4858 1389 806 302 261 11 43 chr3 41424808 41424900 -186099678 + L1MC4 LINE L1 6615 6703 -1339 21 0 0 0 chr3 41425219 41425240 -186099338 + AT_rich Low_complexity Low_complexity 1 21 0 2072 144 7 0 chr3 41425240 41425545 -186099033 - AluSx SINE Alu -5 307 1 668 268 22 35 chr3 41426656 41426884 -186097694 + MIR SINE MIR 38 262 0 2211 115 3 3 chr3 41427345 41427657 -186096921 - AluSx SINE Alu 0 312 1 1892 128 16 46 chr3 41428860 41429166 -186095412 - AluJb SINE Alu -15 297 1 978 82 14 48 chr3 41429805 41429952 -186094626 + AluSc SINE Alu 160 301 -8 25 0 0 0 chr3 41429952 41429977 -186094601 + AT_rich Low_complexity Low_complexity 1 25 0 797 89 0 0 chr3 41430213 41430314 -186094264 + AluS SINE Alu 2 102 -210 784 68 38 0 chr3 41430316 41430449 -186094129 + (TA)n Simple_repeat Simple_repeat 2 139 0 1553 155 80 4 chr3 41430449 41430713 -186093865 - AluJb SINE Alu -28 284 1 1065 231 31 12 chr3 41430750 41431005 -186093573 + MIR SINE MIR 1 260 -2 691 252 56 56 chr3 41431014 41431316 -186093262 + L2 LINE L2 3008 3309 -4 181 0 33 33 chr3 41431798 41431828 -186092750 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 256 212 14 16 chr3 41432061 41432134 -186092444 - MLT1J2 LTR MaLR -7 428 326 345 287 37 15 chr3 41432326 41432462 -186092116 - MLT1J2 LTR MaLR -293 157 19 487 366 60 37 chr3 41432932 41433155 -186091423 - L2 LINE L2 -1 3271 3055 1150 103 0 27 chr3 41433155 41433340 -186091238 - L1MA8 LINE L1 -1 6290 6111 487 366 60 37 chr3 41433340 41433417 -186091161 - L2 LINE L2 -217 3055 2981 2219 107 17 0 chr3 41433417 41433717 -186090861 + AluSp SINE Alu 1 305 -8 487 366 60 37 chr3 41433717 41434122 -186090456 - L2 LINE L2 -291 2981 2553 1194 253 90 31 chr3 41434270 41434693 -186089885 + LTR16A1 LTR ERVL 1 448 -9 306 270 72 9 chr3 41435102 41435213 -186089365 + MIR3 SINE MIR 86 203 -5 411 113 0 0 chr3 41435251 41435313 -186089265 + (T)n Simple_repeat Simple_repeat 1 62 0 290 275 11 79 chr3 41435943 41436132 -186088446 + GA-rich Low_complexity Low_complexity 1 176 0 236 281 16 16 chr3 41436315 41436379 -186088199 - MIR SINE MIR -185 77 14 454 284 15 17 chr3 41436464 41436641 -186087937 + MIR SINE MIR 4 176 -62 184 285 185 25 chr3 41437400 41437600 -186086978 - MIR SINE MIR -2 260 29 233 326 121 23 chr3 41438229 41438361 -186086217 + L2 LINE L2 3085 3229 -43 844 165 94 24 chr3 41438666 41438836 -186085742 - MER5A DNA MER1_type 0 189 8 387 33 49 0 chr3 41439693 41439754 -186084824 + (TCTA)n Simple_repeat Simple_repeat 4 67 0 320 312 32 51 chr3 41439799 41439956 -186084622 + HAL1 LINE L1 945 1098 -1409 242 326 34 0 chr3 41440509 41440598 -186083980 + MER94 DNA DNA 1 92 -42 683 279 24 90 chr3 41441427 41441760 -186082818 + MLT1I LTR MaLR 77 387 -22 229 197 0 56 chr3 41442526 41442597 -186081981 + G-rich Low_complexity Low_complexity 6 72 0 270 344 0 0 chr3 41442773 41442927 -186081651 + G-rich Low_complexity Low_complexity 1 154 0 765 85 0 0 chr3 41442973 41443079 -186081499 + (TTCC)n Simple_repeat Simple_repeat 1 106 0 287 284 182 7 chr3 41443282 41443430 -186081148 + MIR3 SINE MIR 34 207 -1 674 264 90 15 chr3 41443935 41444315 -186080263 - MLT1J2 LTR MaLR -11 439 2 3050 108 32 0 chr3 41444955 41445392 -186079186 + L1MA3 LINE L1 5855 6305 0 220 204 19 37 chr3 41445861 41445915 -186078663 - MIR SINE MIR -190 72 20 533 86 0 12 chr3 41446009 41446090 -186078488 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 1860 143 43 3 chr3 41446094 41446394 -186078184 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 41446815 41446836 -186077742 + GC_rich Low_complexity Low_complexity 1 21 0 322 277 80 104 chr3 41448601 41448890 -186075688 - L2 LINE L2 -32 3240 2959 1082 273 111 12 chr3 41449703 41450109 -186074469 + MLT1J1 LTR MaLR 1 446 0 234 0 0 0 chr3 41450798 41450824 -186073754 + (CTG)n Simple_repeat Simple_repeat 2 27 0 3570 96 27 7 chr3 41451399 41451960 -186072618 + L1PA13 LINE L1 5572 6143 -20 234 0 0 0 chr3 41453282 41453308 -186071270 + (T)n Simple_repeat Simple_repeat 1 26 0 323 267 216 23 chr3 41454195 41454371 -186070207 - MIR SINE MIR -50 212 3 442 245 44 13 chr3 41454906 41455064 -186069514 + MIR SINE MIR 69 230 -32 201 207 0 0 chr3 41457103 41457132 -186067446 + T-rich Low_complexity Low_complexity 1 29 0 709 254 69 43 chr3 41457268 41457618 -186066960 + LTR16A LTR ERVL 92 450 0 1780 235 92 57 chr3 41458147 41459080 -186065498 - HAL1 LINE L1 -866 1641 676 433 292 134 11 chr3 41459099 41459376 -186065202 - HAL1 LINE L1 -1898 609 299 2582 118 16 5 chr3 41459376 41459807 -186064771 - Tigger4(Zombi) DNA MER2_type 0 2731 2296 322 154 123 0 chr3 41459812 41459877 -186064701 - Tigger4(Zombi) DNA MER2_type -2658 73 1 657 231 106 97 chr3 41461743 41462224 -186062354 - MLT1H LTR MaLR -7 542 15 332 282 134 12 chr3 41462627 41462744 -186061834 + MIR SINE MIR 10 137 -71 183 227 23 23 chr3 41463232 41463276 -186061302 - MIR SINE MIR -149 59 16 225 183 0 0 chr3 41463425 41463485 -186061093 + (CA)n Simple_repeat Simple_repeat 1 60 0 391 253 120 27 chr3 41464196 41464346 -186060232 - MER5A DNA MER1_type -1 188 25 1811 110 0 0 chr3 41464380 41464616 -186059962 + AluSx SINE Alu 1 236 -76 1827 179 3 7 chr3 41464652 41464948 -186059630 - AluJo SINE Alu -17 295 1 237 255 0 0 chr3 41465019 41465070 -186059508 - MIR SINE MIR -126 136 86 800 195 67 0 chr3 41465271 41465466 -186059112 - L1MD3 LINE L1 -1 7994 7787 246 240 0 0 chr3 41465655 41465705 -186058873 + LTR16A1 LTR ERVL 3 52 -405 1123 189 122 50 chr3 41465779 41466139 -186058439 + LTR16A1 LTR ERVL 58 443 -14 1055 197 45 42 chr3 41467733 41468024 -186056554 + L1MA10 LINE L1 6024 6318 -16 2293 98 0 7 chr3 41468024 41468320 -186056258 - AluSp SINE Alu -19 294 1 1055 197 45 42 chr3 41468320 41468338 -186056240 + L1MA10 LINE L1 6318 6334 0 388 248 66 16 chr3 41469799 41469920 -186054658 + MIR SINE MIR 107 233 -29 923 200 33 0 chr3 41470121 41470301 -186054277 + MER5A DNA MER1_type 2 187 -2 429 217 7 20 chr3 41472740 41472892 -186051686 + CT-rich Low_complexity Low_complexity 1 150 0 369 0 0 0 chr3 41473614 41473655 -186050923 + (CA)n Simple_repeat Simple_repeat 1 41 0 472 269 87 39 chr3 41474129 41474337 -186050241 - HAL1 LINE L1 -2279 228 11 462 236 101 34 chr3 41474656 41474834 -186049744 - L1ME LINE L1 -369 5752 5563 317 377 85 11 chr3 41475806 41476087 -186048491 + L2 LINE L2 2404 2705 -609 228 268 85 0 chr3 41476099 41476181 -186048397 + HAL1 LINE L1 4 92 -2415 240 261 0 23 chr3 41476904 41476992 -186047586 + HAL1 LINE L1 821 906 -1601 2327 85 3 10 chr3 41477196 41477502 -186047076 - AluSg SINE Alu -6 304 1 33 0 0 0 chr3 41477624 41477657 -186046921 + AT_rich Low_complexity Low_complexity 1 33 0 563 264 133 58 chr3 41477843 41478240 -186046338 - L1ME3A LINE L1 -219 5951 5525 225 262 12 12 chr3 41478338 41478422 -186046156 - L1ME3A LINE L1 -1567 4579 4496 472 275 40 56 chr3 41479138 41479513 -186045065 - L1MC5 LINE L1 -54 7907 7539 743 266 183 12 chr3 41479635 41479826 -186044752 - L1MC4a LINE L1 -1640 6168 6011 450 0 0 0 chr3 41479826 41479876 -186044702 + (TG)n Simple_repeat Simple_repeat 1 50 0 743 266 183 12 chr3 41479876 41480192 -186044386 - L1MC4a LINE L1 -1797 6011 5574 279 0 0 0 chr3 41481044 41481075 -186043503 + (TAA)n Simple_repeat Simple_repeat 1 31 0 385 253 58 89 chr3 41481296 41481486 -186043092 - MLT1H LTR MaLR -343 206 23 278 340 56 23 chr3 41481551 41481768 -186042810 - MIR3 SINE MIR -26 236 2 12659 197 39 12 chr3 41483145 41486392 -186038186 - L1 LINE L1 -821 6346 3009 300 198 19 38 chr3 41486404 41486510 -186038068 + CT-rich Low_complexity Low_complexity 1 104 0 1980 173 3 0 chr3 41486520 41486827 -186037751 - AluSx SINE Alu -2 310 3 1653 265 65 59 chr3 41487386 41487702 -186036876 - L1 LINE L1 -4158 3010 2697 896 116 0 7 chr3 41487702 41487848 -186036730 + (TTTC)n Simple_repeat Simple_repeat 4 148 0 2235 90 0 0 chr3 41487848 41488127 -186036451 - AluY SINE Alu -32 279 1 1653 265 65 59 chr3 41488127 41489253 -186035325 - L1 LINE L1 -4470 2698 1617 322 387 6 17 chr3 41490184 41490357 -186034221 - L1 LINE L1 -5970 1128 958 480 308 137 22 chr3 41490543 41490865 -186033713 + MLT1J LTR MaLR 110 468 -43 347 336 16 0 chr3 41491513 41491641 -186032937 + L2 LINE L2 2581 2710 -604 4998 152 37 10 chr3 41491643 41492644 -186031934 + L1MA7 LINE L1 5261 6288 -3 268 319 74 42 chr3 41492801 41493017 -186031561 + L2 LINE L2 2992 3214 -58 182 342 13 13 chr3 41494117 41494193 -186030385 - L3b LINE CR1 -180 1403 1328 470 291 67 56 chr3 41494524 41494792 -186029786 - HAL1b LINE L1 -46 1302 1032 611 289 76 36 chr3 41494792 41495148 -186029430 - HAL1b LINE L1 -596 752 383 2091 251 72 11 chr3 41495790 41496455 -186028123 - L1ME3A LINE L1 -11 6159 5454 410 252 140 0 chr3 41498130 41498273 -186026305 - MLT1L LTR MaLR -311 304 142 239 186 18 71 chr3 41498474 41498587 -186025991 + (TTATA)n Simple_repeat Simple_repeat 5 111 0 199 257 122 27 chr3 41501008 41501082 -186023496 + L2 LINE L2 3161 3241 -31 523 230 175 5 chr3 41502458 41502658 -186021920 - LTR16A1 LTR ERVL 0 457 224 382 316 138 13 chr3 41503166 41503391 -186021187 - L3 LINE CR1 -60 1517 1265 188 341 71 12 chr3 41503780 41503865 -186020713 + MIR SINE MIR 27 116 -92 653 329 101 10 chr3 41503984 41504568 -186020010 - L2 LINE L2 -1142 2172 1536 766 214 10 36 chr3 41506100 41506292 -186018286 - MER5A DNA MER1_type -1 188 2 2054 151 13 53 chr3 41507089 41507538 -186017040 + LTR23 LTR ERV1 7 437 0 1764 263 44 5 chr3 41507941 41508507 -186016071 - L1ME3A LINE L1 -11 6159 5572 2141 119 0 13 chr3 41508523 41508825 -186015753 + AluSx SINE Alu 1 298 -14 640 313 93 48 chr3 41508889 41508983 -186015595 + L1MC4a LINE L1 5190 5278 -892 757 309 4 0 chr3 41508983 41509239 -186015339 - MIR SINE MIR -4 258 2 640 313 93 48 chr3 41509239 41509848 -186014730 + L1MC4a LINE L1 5278 5809 -361 2123 118 3 0 chr3 41509958 41510255 -186014323 - AluSx SINE Alu -14 298 1 1820 123 0 4 chr3 41510332 41510584 -186013994 - AluSc SINE Alu -15 294 44 23 33 0 0 chr3 41510895 41510925 -186013653 + AT_rich Low_complexity Low_complexity 1 30 0 1449 211 109 32 chr3 41511141 41511616 -186012962 + MLT1H LTR MaLR 1 512 -37 265 155 52 35 chr3 41511663 41511837 -186012741 + (TA)n Simple_repeat Simple_repeat 2 178 0 1045 174 5 14 chr3 41511837 41512050 -186012528 - L1MA8 LINE L1 -105 6186 5976 347 328 104 25 chr3 41512111 41512352 -186012226 + HAL1b LINE L1 515 774 -574 3532 160 65 9 chr3 41513891 41514661 -186009917 - L1MA8 LINE L1 -4 6287 5475 269 285 77 46 chr3 41515159 41515289 -186009289 + MIR SINE MIR 18 151 -111 1292 211 63 41 chr3 41516405 41516817 -186007761 + L1ME3A LINE L1 5748 6168 -2 283 286 144 38 chr3 41517146 41517569 -186007009 + HAL1 LINE L1 1211 1678 -829 232 231 62 15 chr3 41519553 41519618 -186004960 + MIR SINE MIR 119 186 -76 277 327 30 42 chr3 41520697 41520862 -186003716 - MLT1J2 LTR MaLR -25 425 263 552 291 0 0 chr3 41521544 41521692 -186002886 + MER117 DNA MER1_type 24 171 -26 665 310 74 25 chr3 41522112 41522596 -186001982 + LTR33 LTR ERVL 14 521 0 34 24 0 0 chr3 41522997 41523038 -186001540 + AT_rich Low_complexity Low_complexity 1 41 0 189 0 0 0 chr3 41523347 41523368 -186001210 + (TCCC)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr3 41524169 41524192 -186000386 + AT_rich Low_complexity Low_complexity 1 23 0 6395 83 4 65 chr3 41524611 41525423 -185999155 + L1MA2 LINE L1 5219 5944 -360 2469 122 19 3 chr3 41525423 41525792 -185998786 + THE1C LTR MaLR 1 375 0 6395 83 4 65 chr3 41525792 41526123 -185998455 + L1MA2 LINE L1 5944 6294 -10 725 206 29 6 chr3 41528314 41528484 -185996094 - MSTD LTR MaLR -3 393 220 24 0 0 0 chr3 41528827 41528851 -185995727 + AT_rich Low_complexity Low_complexity 1 24 0 325 328 169 28 chr3 41529316 41529676 -185994902 + L1M4 LINE L1 3690 4100 -2046 231 331 141 0 chr3 41530253 41530374 -185994204 + MIR SINE MIR 2 139 -123 207 267 56 0 chr3 41530462 41530552 -185994026 + (TCTA)n Simple_repeat Simple_repeat 4 98 0 23 33 0 0 chr3 41530695 41530725 -185993853 + AT_rich Low_complexity Low_complexity 1 30 0 227 175 18 35 chr3 41530872 41530929 -185993649 - MLT1J1 LTR MaLR -36 410 355 324 265 0 12 chr3 41531031 41531114 -185993464 - MLT1J2 LTR MaLR -302 148 67 201 39 0 0 chr3 41532699 41532725 -185991853 + (CA)n Simple_repeat Simple_repeat 1 26 0 1058 213 77 0 chr3 41533752 41533959 -185990619 - MER58A DNA MER1_type -1 223 1 451 330 134 14 chr3 41534089 41534298 -185990280 - MIR SINE MIR -26 236 3 917 254 60 58 chr3 41534844 41535148 -185989430 - L1ME2 LINE L1 -283 5881 5574 1542 208 7 3 chr3 41535148 41535432 -185989146 + AluJb SINE Alu 3 287 -25 917 254 60 58 chr3 41535432 41535596 -185988982 - L1ME2 LINE L1 -590 5574 5412 218 378 0 10 chr3 41535874 41535972 -185988606 + MIR SINE MIR 58 154 -108 321 242 22 11 chr3 41536452 41536543 -185988035 + MIR SINE MIR 156 247 -15 268 293 170 0 chr3 41537527 41537633 -185986945 - L2 LINE L2 -10 3262 3139 207 267 367 0 chr3 41538293 41538413 -185986165 - L2 LINE L2 -8 3264 3101 912 273 37 20 chr3 41538530 41538878 -185985700 - LTR16C LTR ERVL -5 486 133 268 281 58 41 chr3 41539670 41539791 -185984787 + MIR SINE MIR 106 228 -34 2990 142 36 17 chr3 41540343 41540864 -185983714 - LTR26B LTR ERV1 0 531 1 222 378 107 18 chr3 41541059 41541284 -185983294 + L2 LINE L2 2864 3108 -164 547 234 94 42 chr3 41541376 41541691 -185982887 + MLT1J2 LTR MaLR 67 448 -2 190 297 110 34 chr3 41542420 41542538 -185982040 - MIR SINE MIR -54 208 82 383 226 9 85 chr3 41543270 41543409 -185981169 + MIR SINE MIR 7 138 -70 428 229 130 0 chr3 41544143 41544274 -185980304 + MLT1E1 LTR MaLR 1 148 -506 323 221 13 0 chr3 41544402 41544479 -185980099 + MLT1E3 LTR MaLR 547 624 0 814 232 16 11 chr3 41545213 41545398 -185979180 - MER5A DNA MER1_type -2 187 2 514 317 107 10 chr3 41546371 41546576 -185978002 - MIR SINE MIR -4 258 34 1434 182 72 43 chr3 41546632 41547006 -185977572 + MLT1B LTR MaLR 1 385 -5 274 156 0 143 chr3 41547343 41547420 -185977158 + MLT1H LTR MaLR 481 546 -3 434 220 50 71 chr3 41547636 41547777 -185976801 + MIR SINE MIR 20 157 -105 225 299 6 128 chr3 41548189 41548353 -185976225 + MIR SINE MIR 84 227 -35 378 308 9 0 chr3 41548394 41548501 -185976077 - MIR3 SINE MIR -46 162 55 525 286 130 44 chr3 41548596 41548911 -185975667 - L3 LINE CR1 -2 1575 1234 250 191 113 113 chr3 41549139 41549307 -185975271 - L2 LINE L2 -54 3259 3092 2340 105 20 8 chr3 41549663 41550014 -185974564 + THE1A LTR MaLR 1 355 0 11107 98 29 1 chr3 41550014 41551551 -185973027 + THE1A-int LTR MaLR 1 1580 0 2211 136 8 8 chr3 41551553 41551906 -185972672 + THE1A LTR MaLR 3 355 0 243 135 0 0 chr3 41552333 41552370 -185972208 + MLT1I LTR MaLR 101 137 -272 1139 110 13 0 chr3 41552389 41552544 -185972034 - AluSq SINE Alu -109 204 48 1424 238 95 66 chr3 41554674 41555449 -185969129 + L2 LINE L2 2499 3306 -7 375 351 0 12 chr3 41555447 41555571 -185969007 - MIR SINE MIR -85 123 3 * 237 135 0 0 chr3 41556174 41556226 -185968352 + (TA)n Simple_repeat Simple_repeat 2 53 0 736 245 241 10 chr3 41556286 41556638 -185967940 + MLT1G1 LTR MaLR 77 558 -37 307 287 90 27 chr3 41556868 41557091 -185967487 - LTR16A1 LTR ERVL -220 237 1 2112 159 55 26 chr3 41559129 41559545 -185965033 + MSTC LTR MaLR 1 428 0 251 140 20 0 chr3 41559585 41559635 -185964943 + CT-rich Low_complexity Low_complexity 3 53 0 218 337 180 22 chr3 41559982 41560383 -185964195 - L2 LINE L2 -957 2357 1894 971 288 154 17 chr3 41561141 41561499 -185963079 + L2 LINE L2 2901 3307 -6 282 353 23 30 chr3 41561790 41561923 -185962655 - MIR3 SINE MIR -14 194 63 629 344 100 31 chr3 41562483 41562757 -185961821 + L2 LINE L2 1801 2055 -1259 408 281 111 96 chr3 41562757 41563298 -185961280 + MLT1H LTR MaLR 1 549 0 629 344 100 31 chr3 41563298 41563800 -185960778 + L2 LINE L2 2055 2631 -683 24 0 0 0 chr3 41563881 41563905 -185960673 + AT_rich Low_complexity Low_complexity 1 24 0 249 279 80 43 chr3 41563964 41564240 -185960338 - L1MEd LINE L1 -3519 3329 3044 241 277 0 0 chr3 41564341 41564424 -185960154 - L1MEd LINE L1 -3961 2888 2806 25 0 0 0 chr3 41564879 41564904 -185959674 + AT_rich Low_complexity Low_complexity 1 25 0 407 261 98 62 chr3 41564939 41565699 -185958879 - L1MEd LINE L1 -4703 2326 1504 352 296 26 40 chr3 41565702 41565854 -185958724 + MIR SINE MIR 113 262 0 719 310 41 35 chr3 41565917 41566311 -185958267 - L1MEd LINE L1 -5396 1442 1047 923 256 30 0 chr3 41566505 41566708 -185957870 - MER58A DNA MER1_type -15 209 1 344 258 41 31 chr3 41568407 41568504 -185956074 + MIR SINE MIR 29 126 -136 253 329 19 19 chr3 41568573 41568786 -185955792 - L1M4 LINE L1 -3595 2551 2339 222 91 0 0 chr3 41568806 41568839 -185955739 + (CA)n Simple_repeat Simple_repeat 2 34 0 709 295 73 54 chr3 41569565 41570125 -185954453 + L1MEd LINE L1 527 1097 -5022 4511 137 8 16 chr3 41570632 41571423 -185953155 - L1MA4A LINE L1 -6 6999 6216 3596 135 2 14 chr3 41571423 41572008 -185952570 + L1PB3 LINE L1 5575 6152 -2 8528 185 120 15 chr3 41572012 41574511 -185950067 - L1MA4A LINE L1 -743 6105 3456 6106 176 47 159 chr3 41574507 41574862 -185949716 - L1MA4A LINE L1 -4812 2037 1644 * 231 103 0 0 chr3 41574862 41574901 -185949677 + (TG)n Simple_repeat Simple_repeat 2 40 0 6106 176 47 159 chr3 41574901 41576835 -185947743 - L1MA4A LINE L1 -5205 1644 4 549 168 124 124 chr3 41576896 41577170 -185947408 - ORSL DNA AcHobo -1 274 1 706 279 63 35 chr3 41577184 41577499 -185947079 - LTR16C LTR ERVL 0 491 168 313 379 12 12 chr3 41577886 41578047 -185946531 + MIR3 SINE MIR 21 181 -27 375 339 79 31 chr3 41578084 41578338 -185946240 - L2 LINE L2 -5 3267 3002 255 330 19 38 chr3 41579739 41579845 -185944733 - MIR SINE MIR -80 128 25 519 280 71 48 chr3 41580163 41580660 -185943918 - MLT1G LTR MaLR -6 549 25 245 349 89 36 chr3 41580807 41581088 -185943490 - L2 LINE L2 -384 2930 2635 5028 137 17 2 chr3 41581107 41581935 -185942643 + L1PA15 LINE L1 5322 6161 -4 599 207 75 48 chr3 41581993 41582181 -185942397 + MIR SINE MIR 3 195 -67 236 293 198 0 chr3 41582174 41582290 -185942288 + L2 LINE L2 3175 3313 0 * 420 261 9 132 chr3 41582317 41582666 -185941912 + L1MC4a LINE L1 5624 5929 -1879 210 244 0 0 chr3 41582666 41582711 -185941867 + (TATG)n Simple_repeat Simple_repeat 4 48 0 361 274 83 30 chr3 41583285 41583453 -185941125 - MIR SINE MIR -21 241 65 336 291 30 70 chr3 41583495 41583694 -185940884 - MIR3 SINE MIR 0 208 18 1357 203 21 7 chr3 41584139 41584429 -185940149 + MLT1E1 LTR MaLR 2 295 -359 955 222 65 0 chr3 41584449 41584679 -185939899 + MLT1E1 LTR MaLR 410 654 0 3660 32 2 0 chr3 41584838 41585276 -185939302 + L1PA4 LINE L1 5714 6152 -3 371 336 25 18 chr3 41585425 41585580 -185938998 + MIR SINE MIR 3 155 -61 205 191 0 0 chr3 41586040 41586082 -185938496 + A-rich Low_complexity Low_complexity 2 43 0 273 289 74 25 chr3 41586631 41586752 -185937826 + MIR3 SINE MIR 82 208 0 4238 92 1 94 chr3 41586802 41587534 -185937044 + MER4A LTR ERV1 1 664 0 216 200 0 0 chr3 41588214 41588264 -185936314 + GA-rich Low_complexity Low_complexity 2 51 0 922 257 88 16 chr3 41588608 41588927 -185935651 - LTR16C LTR ERVL -1 490 149 337 282 54 20 chr3 41589569 41589718 -185934860 - MIR SINE MIR -108 154 1 424 254 92 21 chr3 41590303 41590445 -185934133 - L2 LINE L2 -1 3312 3161 231 170 0 0 chr3 41590694 41590741 -185933837 + (TG)n Simple_repeat Simple_repeat 2 48 0 290 261 0 0 chr3 41591257 41591322 -185933256 - MIR SINE MIR -11 251 187 293 229 0 31 chr3 41592119 41592215 -185932363 + (CATA)n Simple_repeat Simple_repeat 2 94 0 279 242 172 20 chr3 41592899 41592998 -185931580 + MIR3 SINE MIR 15 128 -80 663 237 11 59 chr3 41593041 41593227 -185931351 + MLT1D LTR MaLR 1 177 -328 7844 16 0 0 chr3 41593242 41594429 -185930149 - L1PA2 LINE L1 0 6155 4969 32859 55 2 1 chr3 41594531 41598888 -185925690 - L1P LINE L1 -1784 4362 1 1563 157 17 24 chr3 41598892 41599185 -185925393 + L1PA13 LINE L1 5865 6155 -8 926 178 29 6 chr3 41599195 41599369 -185925209 + MLT1D LTR MaLR 326 503 -2 206 343 65 28 chr3 41600097 41600205 -185924373 - MIR SINE MIR -149 113 2 362 322 54 42 chr3 41600740 41600979 -185923599 + MIR SINE MIR 10 251 -11 2441 100 0 0 chr3 41601150 41601460 -185923118 - AluSx SINE Alu -2 310 1 2207 118 0 0 chr3 41601848 41602137 -185922441 - AluSg SINE Alu -21 289 1 205 247 191 11 chr3 41602664 41602753 -185921825 - L2 LINE L2 -17 3255 3151 21 0 0 0 chr3 41602829 41602850 -185921728 + AT_rich Low_complexity Low_complexity 1 21 0 304 330 181 6 chr3 41603095 41603277 -185921301 - MIR SINE MIR -17 245 32 * 307 244 0 7 chr3 41603272 41603344 -185921234 + MIR SINE MIR 95 148 -60 188 299 174 48 chr3 41604347 41604514 -185920064 - MIR SINE MIR -10 252 65 665 255 53 103 chr3 41605360 41605902 -185918676 + L1MC4 LINE L1 6647 7161 -800 6799 199 42 39 chr3 41605928 41608799 -185915779 - L1MA10 LINE L1 0 6222 3367 19355 186 21 14 chr3 41608803 41610875 -185913703 - L1PA12 LINE L1 -2 7604 5548 1791 165 147 26 chr3 41610875 41611257 -185913321 + MSTA LTR MaLR 1 428 0 19355 186 21 14 chr3 41611257 41615957 -185908621 - L1PA12 LINE L1 -2058 5548 1 1078 206 36 0 chr3 41616003 41616280 -185908298 - L1MA10 LINE L1 -2656 3378 3092 3690 163 50 8 chr3 41616296 41617034 -185907544 - L1MA4A LINE L1 -23 6982 6214 5881 192 26 6 chr3 41617601 41618930 -185905648 - L1MA4A LINE L1 -814 6034 4679 * 6191 77 14 16 chr3 41618928 41619841 -185904737 - L1PA8 LINE L1 -5 6167 5257 1901 192 14 33 chr3 41619836 41619988 -185904590 - L1MA4A LINE L1 -2158 4690 4537 * 2398 82 0 0 chr3 41619988 41620282 -185904296 - AluY SINE Alu -17 294 1 1901 192 14 33 chr3 41620282 41620567 -185904011 - L1MA4A LINE L1 -2311 4537 4260 2607 98 40 21 chr3 41620567 41620996 -185903582 - L1MA1 LINE L1 0 6302 5866 1901 192 14 33 chr3 41620996 41621041 -185903537 - L1MA4A LINE L1 -2588 4260 4216 5269 215 23 36 chr3 41621041 41622305 -185902273 - L1MA4A LINE L1 -4896 1953 706 2809 273 75 27 chr3 41622318 41625939 -185898639 - L1MA10 LINE L1 -2942 3092 11 230 135 0 0 chr3 41625952 41625989 -185898589 + L1MC5 LINE L1 7173 7209 -752 355 282 89 8 chr3 41626143 41626267 -185898311 + L1MC5 LINE L1 7270 7403 -558 933 278 39 66 chr3 41626396 41626565 -185898013 + MLT1H LTR MaLR 68 240 -355 1676 181 24 0 chr3 41626565 41626857 -185897721 - AluJo SINE Alu -13 299 1 933 278 39 66 chr3 41626857 41627181 -185897397 + MLT1H LTR MaLR 240 595 0 425 37 0 0 chr3 41627426 41627521 -185897057 + L1PA4 LINE L1 6089 6155 0 4563 151 19 3 chr3 41627521 41628993 -185895585 - L1PA14 LINE L1 -297 5864 4379 910 253 93 27 chr3 41629013 41629314 -185895264 - MLT1D LTR MaLR -175 330 10 562 211 0 0 chr3 41629357 41629466 -185895112 - MLT1D LTR MaLR -396 109 1 382 311 15 8 chr3 41629516 41629648 -185894930 + MIR SINE MIR 74 206 -56 1814 179 42 6 chr3 41629700 41630036 -185894542 + MER7A DNA MER2_type 1 346 0 263 290 48 10 chr3 41630036 41630175 -185894403 - MLT1J2 LTR MaLR -2 444 300 299 306 31 0 chr3 41630201 41630299 -185894279 - MLT1J2 LTR MaLR -209 241 141 331 236 34 11 chr3 41630312 41630401 -185894177 - MLT1J1 LTR MaLR -355 91 1 428 313 192 31 chr3 41630665 41631300 -185893278 - L2 LINE L2 -1003 2311 1575 22 56 0 0 chr3 41631643 41631679 -185892899 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr3 41631827 41631856 -185892722 + AT_rich Low_complexity Low_complexity 1 29 0 560 319 29 21 chr3 41632242 41632480 -185892098 + L2 LINE L2 3074 3313 0 322 333 0 17 chr3 41632805 41632925 -185891653 - L2 LINE L2 0 3313 3196 277 308 165 0 chr3 41632962 41633095 -185891483 + L2 LINE L2 3117 3271 -1 340 268 24 47 chr3 41633249 41633376 -185891202 - MIR SINE MIR -2 260 137 215 345 0 0 chr3 41633978 41634036 -185890542 + MIR SINE MIR 53 110 -152 2177 145 53 13 chr3 41634049 41634443 -185890135 - MSTA LTR MaLR 0 428 19 180 125 0 0 chr3 41634774 41634806 -185889772 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 225 310 178 47 chr3 41634914 41635043 -185889535 + L2 LINE L2 3127 3272 0 25072 44 40 2 chr3 41635818 41639157 -185885421 - L1P LINE L1 -2681 3465 1 635 240 208 8 chr3 41639185 41639435 -185885143 + MLT1D LTR MaLR 191 490 -15 215 306 174 50 chr3 41640174 41640295 -185884283 - L2 LINE L2 0 3272 3137 2121 92 9 0 chr3 41640617 41640944 -185883634 + L1P LINE L1 1179 1508 -4638 * 12362 23 0 0 chr3 41640937 41642447 -185882131 + L1P LINE L1 3447 4956 -1190 5835 58 5 3 chr3 41642551 41643509 -185881069 - L1PA4 LINE L1 -144 6011 5051 23 54 0 0 chr3 41643649 41643686 -185880892 + GC_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr3 41643881 41643904 -185880674 + GC_rich Low_complexity Low_complexity 1 23 0 1733 224 13 34 chr3 41644035 41644478 -185880100 + MLT1E3 LTR MaLR 233 624 0 27 89 0 0 chr3 41645132 41645177 -185879401 + GC_rich Low_complexity Low_complexity 1 45 0 439 249 53 34 chr3 41645440 41645649 -185878929 + L1MC5 LINE L1 7714 7926 -35 22 0 0 0 chr3 41646337 41646359 -185878219 + AT_rich Low_complexity Low_complexity 1 22 0 212 370 58 0 chr3 41646440 41646594 -185877984 - MIR SINE MIR -9 253 91 5660 65 5 3 chr3 41648468 41649228 -185875350 - L1PA7 LINE L1 -3 6151 5390 252 0 0 0 chr3 41649228 41649256 -185875322 + (TTA)n Simple_repeat Simple_repeat 3 30 0 28749 89 20 6 chr3 41649256 41655290 -185869288 - L1PA6 LINE L1 -18 6136 2 6257 98 2 0 chr3 41655292 41656242 -185868336 - L1P LINE L1 -749 5397 4446 366 279 61 34 chr3 41656261 41656408 -185868170 + MIR3 SINE MIR 55 205 -3 578 296 32 8 chr3 41656511 41656764 -185867814 + L1ME LINE L1 5521 5779 -391 2519 207 24 0 chr3 41657104 41657678 -185866900 - L1MB7 LINE L1 -217 5967 5380 22 0 0 0 chr3 41657706 41657728 -185866850 + AT_rich Low_complexity Low_complexity 1 22 0 4410 176 23 32 chr3 41657739 41658706 -185865872 - L1MA7 LINE L1 -10 6281 5324 609 164 0 29 chr3 41658711 41658815 -185865763 - FRAM SINE Alu -24 152 52 475 205 5 146 chr3 41659208 41659413 -185865165 + MER51C LTR ERV1 453 628 -12 342 77 92 31 chr3 41659422 41659487 -185865091 + MER51C-int LTR ERV1 1 69 -7747 2002 131 3 16 chr3 41659702 41660007 -185864571 - AluSx SINE Alu -11 301 1 295 135 21 146 chr3 41660277 41660373 -185864205 + MER51C-int LTR ERV1 698 781 -7035 * 304 345 23 0 chr3 41660371 41660545 -185864033 + PRIMA41-int LTR ERV1 2643 2820 -4936 5733 178 30 14 chr3 41660745 41662000 -185862578 - L1MA7 LINE L1 -1185 4961 3688 3262 199 61 150 chr3 41662005 41663150 -185861428 - L1MB7 LINE L1 -768 5378 4331 894 220 18 0 chr3 41663150 41663318 -185861260 + AluJb SINE Alu 133 303 -9 3262 199 61 150 chr3 41663318 41664151 -185860427 - L1MB7 LINE L1 -1815 4331 3425 25 0 0 0 chr3 41664189 41664214 -185860364 + AT_rich Low_complexity Low_complexity 1 25 0 310 157 14 14 chr3 41664260 41664330 -185860248 + CT-rich Low_complexity Low_complexity 1 70 0 435 313 44 53 chr3 41664331 41664472 -185860106 - L2 LINE L2 -13 3300 3160 252 59 0 0 chr3 41664472 41664506 -185860072 + (CA)n Simple_repeat Simple_repeat 2 35 0 435 313 44 53 chr3 41664506 41664591 -185859987 - L2 LINE L2 -153 3160 3076 23 0 0 0 chr3 41664803 41664826 -185859752 + AT_rich Low_complexity Low_complexity 1 23 0 387 300 253 17 chr3 41666006 41666239 -185858339 - L3 LINE CR1 -88 1489 1202 1680 104 9 0 chr3 41667504 41667724 -185856854 - AluSg/x SINE Alu -24 288 67 947 274 104 40 chr3 41667901 41668306 -185856272 - LTR16A1 LTR ERVL 0 457 27 2184 127 0 13 chr3 41668607 41668921 -185855657 - AluSx SINE Alu -2 310 1 424 118 153 12 chr3 41668921 41668980 -185855598 + L1MA9 LINE L1 6093 6169 -143 216 67 0 0 chr3 41668980 41669010 -185855568 + (CA)n Simple_repeat Simple_repeat 1 30 0 424 118 153 12 chr3 41669010 41669035 -185855543 + L1MA9 LINE L1 6169 6189 -123 191 263 158 12 chr3 41669148 41669269 -185855309 - MIR SINE MIR -58 150 17 2395 82 0 0 chr3 41669894 41670186 -185854392 + AluY SINE Alu 1 292 -19 292 264 124 0 chr3 41670326 41670455 -185854123 + Charlie7 DNA MER1_type 331 475 -2137 1590 219 41 0 chr3 41670465 41670831 -185853747 - L1PA16 LINE L1 -1 6165 5785 276 239 0 15 chr3 41670833 41670900 -185853678 + (TA)n Simple_repeat Simple_repeat 2 67 0 2689 174 36 32 chr3 41670900 41672006 -185852572 - L1PA16 LINE L1 -364 5792 4670 229 221 91 13 chr3 41672186 41672263 -185852315 + LTR16A1 LTR ERVL 223 305 -152 355 266 177 0 chr3 41672360 41672484 -185852094 + MIR SINE MIR 85 230 -32 786 249 62 97 chr3 41672854 41673319 -185851259 - LTR16A1 LTR ERVL -2 455 7 632 167 84 9 chr3 41673448 41673663 -185850915 - Charlie5 DNA MER1_type 0 2620 2390 229 309 89 41 chr3 41673849 41673972 -185850606 + MIR SINE MIR 23 151 -111 593 219 0 39 chr3 41674260 41674388 -185850190 - FLAM_A SINE Alu -10 123 1 206 257 40 40 chr3 41674441 41674515 -185850063 - MIR3 SINE MIR -12 196 123 621 130 38 8 chr3 41675045 41675176 -185849402 - Charlie5 DNA MER1_type -27 2585 2451 783 261 32 9 chr3 41676529 41676747 -185847831 + MER58A DNA MER1_type 1 223 -1 777 251 130 0 chr3 41676758 41677005 -185847573 - LTR16C LTR ERVL 0 491 213 701 246 50 61 chr3 41677457 41677734 -185846844 - MLT1H LTR MaLR -257 292 19 1603 110 5 0 chr3 41677883 41678092 -185846486 - AluSc SINE Alu -94 215 6 340 135 56 8 chr3 41678259 41678385 -185846193 + (TA)n Simple_repeat Simple_repeat 1 132 0 242 305 59 69 chr3 41679512 41679715 -185844863 - L2 LINE L2 -96 3176 2976 796 277 60 8 chr3 41679973 41680208 -185844370 - MIR SINE MIR -15 247 1 3265 308 112 35 chr3 41680262 41680667 -185843911 - L2 LINE L2 -12 3301 2929 2305 114 3 0 chr3 41680667 41680973 -185843605 + AluSp SINE Alu 1 307 -6 3265 308 112 35 chr3 41680973 41681110 -185843468 - L2 LINE L2 -384 2929 2804 1958 121 4 0 chr3 41681110 41681383 -185843195 - AluY SINE Alu -5 306 33 3265 308 112 35 chr3 41681383 41682931 -185841647 - L2 LINE L2 -509 2804 1039 243 299 15 15 chr3 41683156 41683223 -185841355 - L2 LINE L2 -9 3304 3238 305 352 99 58 chr3 41683437 41684003 -185840575 - L2 LINE L2 -340 2974 2386 978 298 63 19 chr3 41684028 41684457 -185840121 + MLT1J2 LTR MaLR 1 448 -2 191 298 226 44 chr3 41684787 41685216 -185839362 - L2 LINE L2 -1457 1857 1351 884 216 53 5 chr3 41685788 41685996 -185838582 - MER20 DNA MER1_type -1 218 1 437 238 57 29 chr3 41688282 41688492 -185836086 - MER69 DNA AcHobo -1 2525 2310 204 226 0 0 chr3 41688534 41688587 -185835991 + (TA)n Simple_repeat Simple_repeat 1 53 0 2648 259 100 33 chr3 41688647 41689639 -185834939 - MER69 DNA AcHobo -1460 1066 9 491 154 0 19 chr3 41689702 41689806 -185834772 + (TTCA)n Simple_repeat Simple_repeat 3 104 0 2172 101 0 7 chr3 41689916 41690204 -185834374 + AluSg SINE Alu 21 306 -4 2476 69 7 0 chr3 41691028 41691334 -185833244 - AluY SINE Alu -3 308 1 272 281 31 10 chr3 41692215 41692311 -185832267 - MER58C DNA MER1_type -6 209 112 182 207 17 0 chr3 41692329 41692387 -185832191 + CT-rich Low_complexity Low_complexity 3 61 0 415 291 24 0 chr3 41692400 41692527 -185832051 - MER58C DNA MER1_type -85 130 1 247 276 79 0 chr3 41692678 41692754 -185831824 - MIR SINE MIR -79 183 102 891 354 78 20 chr3 41692833 41693445 -185831133 - L2 LINE L2 -267 3046 2395 481 302 206 0 chr3 41693687 41693876 -185830702 + MIR SINE MIR 11 238 -24 231 232 11 21 chr3 41693891 41693986 -185830592 + CT-rich Low_complexity Low_complexity 2 95 0 1730 182 7 0 chr3 41694410 41694701 -185829877 - AluJo SINE Alu -8 304 12 5428 35 23 13 chr3 41695630 41696315 -185828263 - L1PA4 LINE L1 -1 6154 5463 331 294 103 57 chr3 41697017 41697211 -185827367 - MIR SINE MIR -3 259 57 902 314 124 33 chr3 41698251 41699192 -185825386 + L2 LINE L2 2264 3297 -16 896 170 0 12 chr3 41699197 41699362 -185825216 + L1PA16 LINE L1 6003 6165 -1 267 343 75 33 chr3 41699427 41699640 -185824938 - MIR SINE MIR -11 251 30 434 293 58 0 chr3 41700151 41700219 -185824359 + L1M4c LINE L1 1276 1339 -5045 1505 137 30 7 chr3 41700219 41700489 -185824089 + L1PA16 LINE L1 5888 6163 -3 434 293 58 0 chr3 41700489 41700611 -185823967 + L1M4c LINE L1 1339 1477 -4907 1495 247 81 36 chr3 41700662 41701193 -185823385 - MLT1E3 LTR MaLR 0 624 70 307 196 216 21 chr3 41701296 41701393 -185823185 + L1ME LINE L1 5703 5818 -346 501 245 264 19 chr3 41701405 41701617 -185822961 - L2 LINE L2 -2498 816 553 1553 110 252 139 chr3 41701621 41702286 -185822292 - LTR12 LTR ERV1 -133 2032 57 231 231 0 0 chr3 41702286 41702338 -185822240 - LTR30 LTR ERV1 -670 52 1 3675 99 4 0 chr3 41702338 41702871 -185821707 - HERV9 LTR ERV1 0 8399 7865 1830 103 13 32 chr3 41702868 41703651 -185820927 - HERV9 LTR ERV1 -5202 1694 711 * 1181 128 11 0 chr3 41703652 41703839 -185820739 - HERV9 LTR ERV1 -3455 4944 4756 * 19474 97 12 6 chr3 41703838 41706788 -185817790 - HERV9 LTR ERV1 -5427 2972 1 4312 85 172 42 chr3 41706788 41707519 -185817059 - LTR12 LTR ERV1 0 826 1 33 0 0 0 chr3 41709287 41709320 -185815258 + AT_rich Low_complexity Low_complexity 1 33 0 243 0 0 0 chr3 41710484 41710511 -185814067 + (T)n Simple_repeat Simple_repeat 1 27 0 215 133 80 0 chr3 41710991 41711066 -185813512 + (TA)n Simple_repeat Simple_repeat 1 81 0 695 221 55 44 chr3 41711353 41711534 -185813044 - MER63A DNA MER1_type -9 201 19 298 309 193 34 chr3 41711712 41712007 -185812571 - L2 LINE L2 -337 2977 2636 452 281 23 41 chr3 41712165 41712336 -185812242 - L2 LINE L2 -940 2374 2207 355 311 48 30 chr3 41712346 41712513 -185812065 - L2 LINE L2 -1065 2249 2080 6295 146 19 2 chr3 41712599 41713616 -185810962 + Tigger1 DNA MER2_type 1385 2418 0 312 289 64 45 chr3 41714124 41714436 -185810142 + L1M4 LINE L1 3390 3707 -2439 397 303 124 11 chr3 41714696 41714874 -185809704 - MIR SINE MIR -34 228 31 1070 268 89 66 chr3 41716985 41717377 -185807201 - MLT1H LTR MaLR -104 445 45 1665 222 40 31 chr3 41717689 41718135 -185806443 + LTR16A1 LTR ERVL 8 457 0 241 373 151 19 chr3 41718719 41719030 -185805548 + L2 LINE L2 2622 2973 -341 899 205 5 0 chr3 41719465 41719650 -185804928 - L1 LINE L1 -2157 3989 3804 * 1188 216 8 0 chr3 41719646 41719891 -185804687 + L1MA9 LINE L1 4645 4891 -1255 632 212 15 0 chr3 41719888 41720025 -185804553 + L1MA9 LINE L1 5324 5462 -706 * 1180 217 26 39 chr3 41720026 41720335 -185804243 + L1MA9 LINE L1 5971 6275 -37 942 308 26 24 chr3 41720672 41721088 -185803490 + LTR16B LTR ERVL 36 452 -12 922 219 153 142 chr3 41721100 41721665 -185802913 + L2 LINE L2 1731 2311 -1003 369 0 0 0 chr3 41721665 41721706 -185802872 + (CCAA)n Simple_repeat Simple_repeat 4 44 0 922 219 153 142 chr3 41721706 41721981 -185802597 + L2 LINE L2 2311 2581 -733 263 157 0 20 chr3 41722101 41722152 -185802426 + L2 LINE L2 3263 3312 -1 188 317 32 57 chr3 41722576 41722699 -185801879 + MIR SINE MIR 136 255 -7 285 325 107 30 chr3 41722986 41723183 -185801395 - L2 LINE L2 0 3313 3102 27 49 0 0 chr3 41723577 41723618 -185800960 + AT_rich Low_complexity Low_complexity 1 41 0 2079 45 8 0 chr3 41723703 41723969 -185800609 + L1PA4 LINE L1 5886 6153 -2 307 259 24 12 chr3 41724982 41725067 -185799511 - MIR SINE MIR -106 156 71 243 0 0 0 chr3 41729463 41729490 -185795088 + (TG)n Simple_repeat Simple_repeat 2 28 0 1699 190 49 0 chr3 41729639 41729965 -185794613 - MER2 DNA MER2_type -1 343 2 211 254 78 109 chr3 41730030 41730223 -185794355 - L2 LINE L2 -22 3291 3105 336 341 56 62 chr3 41730334 41730671 -185793907 - L2 LINE L2 -423 2891 2557 360 0 0 0 chr3 41731004 41731044 -185793534 + (TG)n Simple_repeat Simple_repeat 1 40 0 356 287 28 37 chr3 41731807 41731915 -185792663 + MIR SINE MIR 23 129 -133 1019 185 0 0 chr3 41731933 41732090 -185792488 - AluJ SINE Alu -23 289 133 300 110 14 123 chr3 41732090 41732163 -185792415 + L1M4 LINE L1 4216 4280 -1866 558 158 0 11 chr3 41732202 41732297 -185792281 - AluJ SINE Alu -180 132 39 301 304 44 37 chr3 41732299 41732434 -185792144 + MIR SINE MIR 117 252 -10 807 91 0 4 chr3 41732656 41732882 -185791696 + AluY SINE Alu 19 339 0 747 260 109 27 chr3 41732886 41733328 -185791250 - L1MC4 LINE L1 -60 7982 7505 900 176 14 56 chr3 41733944 41734160 -185790418 + MER3 DNA MER1_type 1 207 -2 319 339 122 17 chr3 41734726 41734906 -185789672 - MIR SINE MIR -33 229 31 309 26 0 0 chr3 41735025 41735063 -185789515 + (CA)n Simple_repeat Simple_repeat 1 38 0 1232 160 28 12 chr3 41735302 41735552 -185789026 - L1MB3 LINE L1 0 6183 5930 393 22 0 0 chr3 41735668 41735714 -185788864 + (TG)n Simple_repeat Simple_repeat 2 47 0 611 213 24 16 chr3 41736964 41737091 -185787487 + FLAM_A SINE Alu 1 128 -5 325 277 107 13 chr3 41737806 41737965 -185786613 - HAL1 LINE L1 -845 1662 1489 198 0 0 0 chr3 41738152 41738174 -185786404 + (T)n Simple_repeat Simple_repeat 1 22 0 22 35 0 0 chr3 41738292 41738321 -185786257 + AT_rich Low_complexity Low_complexity 1 29 0 678 275 82 46 chr3 41738725 41739030 -185785548 + LTR16C LTR ERVL 176 491 0 236 318 62 55 chr3 41739776 41739911 -185784667 + MIR SINE MIR 1 148 -60 186 167 0 0 chr3 41742569 41742605 -185781973 + CT-rich Low_complexity Low_complexity 4 39 0 2032 172 89 5 chr3 41742652 41743047 -185781531 - MSTA LTR MaLR 0 428 1 1717 264 133 60 chr3 41743252 41743315 -185781263 - L1MC4 LINE L1 0 8042 7985 7477 38 0 0 chr3 41743315 41744687 -185779891 + L1PA5 LINE L1 4780 6150 -4 1717 264 133 60 chr3 41744687 41745850 -185778728 - L1MC4 LINE L1 -57 7985 6727 363 301 19 0 chr3 41745850 41745953 -185778625 + MER58C DNA MER1_type 1 105 -110 377 242 0 33 chr3 41746017 41746108 -185778470 + MER58C DNA MER1_type 124 211 -4 359 304 108 14 chr3 41746108 41746170 -185778408 - L1MC4a LINE L1 -1208 6600 6545 3552 134 11 11 chr3 41746170 41746736 -185777842 + L1PA16 LINE L1 5593 6158 -8 359 304 108 14 chr3 41746736 41746967 -185777611 - L1MC4a LINE L1 -1263 6545 6400 453 279 145 28 chr3 41747025 41747452 -185777126 - L1MC4a LINE L1 -1384 6424 5948 26 0 0 0 chr3 41747522 41747548 -185777030 + AT_rich Low_complexity Low_complexity 1 26 0 1618 260 52 48 chr3 41747562 41748213 -185776365 - L1MC4a LINE L1 -1854 5954 5301 374 279 51 10 chr3 41748698 41748878 -185775700 + L1M4 LINE L1 5223 5411 -744 1931 187 93 35 chr3 41748881 41749363 -185775215 - MER67D LTR ERV1 -4 510 1 1390 242 88 92 chr3 41750598 41751037 -185773541 - L1ME3A LINE L1 -20 6150 5711 2161 104 27 3 chr3 41751037 41751336 -185773242 + AluSg SINE Alu 1 306 -4 1390 242 88 92 chr3 41751336 41751351 -185773227 - L1ME3A LINE L1 -459 5711 5697 3927 136 8 3 chr3 41751351 41751982 -185772596 - MER41B LTR ERV1 -1 634 1 1390 242 88 92 chr3 41751982 41752262 -185772316 - L1ME3A LINE L1 -473 5697 5416 1578 192 137 47 chr3 41752262 41752730 -185771848 + MER67D LTR ERV1 1 510 -4 1390 242 88 92 chr3 41752730 41752829 -185771749 - L1ME3A LINE L1 -754 5416 5318 26 0 0 0 chr3 41752835 41752861 -185771717 + AT_rich Low_complexity Low_complexity 1 26 0 1037 284 93 38 chr3 41752896 41753797 -185770781 - L1ME3A LINE L1 -1239 4907 3957 327 206 101 85 chr3 41755134 41755323 -185769255 + MER112 DNA MER1_type 68 259 -1 336 384 31 0 chr3 41755740 41755899 -185768679 - MIR SINE MIR -93 169 6 339 243 20 40 chr3 41756513 41756661 -185767917 - L1MC4a LINE L1 -1008 5138 4994 772 146 30 0 chr3 41756724 41756888 -185767690 + CT-rich Low_complexity Low_complexity 1 169 0 24 0 0 0 chr3 41757192 41757216 -185767362 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr3 41757741 41757776 -185766802 + AT_rich Low_complexity Low_complexity 1 35 0 34 0 0 0 chr3 41758331 41758365 -185766213 + AT_rich Low_complexity Low_complexity 1 34 0 471 305 192 32 chr3 41760668 41761225 -185763353 + L2 LINE L2 1706 2351 -963 717 175 0 29 chr3 41761232 41761369 -185763209 - MLT1A2 LTR MaLR -241 133 1 184 313 0 45 chr3 41761712 41761779 -185762799 - MIR SINE MIR -109 153 90 187 218 23 81 chr3 41761873 41761960 -185762618 + L2 LINE L2 733 814 -2500 254 275 72 0 chr3 41762003 41762072 -185762506 + MIR SINE MIR 78 151 -111 26 64 0 0 chr3 41762697 41762744 -185761834 + AT_rich Low_complexity Low_complexity 1 47 0 202 326 236 0 chr3 41763603 41763747 -185760831 - MIR SINE MIR -13 249 72 329 305 55 8 chr3 41763986 41764114 -185760464 + MIR SINE MIR 29 162 -100 466 285 29 7 chr3 41764538 41764675 -185759903 - MIR SINE MIR -121 141 2 328 330 46 0 chr3 41764742 41764851 -185759727 - MIR SINE MIR -67 195 82 1752 230 127 19 chr3 41764990 41765464 -185759114 + MLT1H LTR MaLR 4 528 -21 428 77 15 0 chr3 41765846 41765911 -185758667 + (TAGA)n Simple_repeat Simple_repeat 1 66 0 819 311 81 84 chr3 41766495 41767611 -185756967 - ERVL LTR ERVL -956 4808 3697 1049 220 0 22 chr3 41767660 41767883 -185756695 - MER20 DNA MER1_type -1 218 1 244 211 28 28 chr3 41767892 41767963 -185756615 - MER94 DNA DNA 0 134 64 1287 326 66 40 chr3 41768010 41768727 -185755851 - ERVL LTR ERVL -2118 3646 2912 1645 351 40 7 chr3 41768943 41769783 -185754795 - ERVL LTR ERVL -3108 2656 1789 16255 200 28 10 chr3 41770038 41775484 -185749094 - L1PA15 LINE L1 -20 6796 1243 206 269 0 0 chr3 41777113 41777165 -185747413 - MIR SINE MIR -49 213 162 239 296 112 26 chr3 41777572 41777688 -185746890 - MIR SINE MIR -60 148 30 220 196 0 54 chr3 41777961 41778017 -185746561 + CT-rich Low_complexity Low_complexity 2 54 0 580 206 83 21 chr3 41778524 41778708 -185745870 - MER39 LTR ERV1 -495 158 6 1034 298 76 39 chr3 41778863 41779273 -185745305 - MLT1J1 LTR MaLR -21 425 1 197 325 132 0 chr3 41780023 41780137 -185744441 - MIR3 SINE MIR -38 170 42 3956 146 8 51 chr3 41780640 41780841 -185743737 + L1MB2 LINE L1 5420 5628 -543 2111 136 120 8 chr3 41780841 41781224 -185743354 + MSTA LTR MaLR 3 428 0 3956 146 8 51 chr3 41781224 41781801 -185742777 + L1MB2 LINE L1 5628 6164 -7 223 213 66 0 chr3 41782054 41782115 -185742463 - MIR SINE MIR -55 207 143 568 290 29 51 chr3 41782613 41782889 -185741689 - L1ME1 LINE L1 -6 6160 5891 1100 258 60 8 chr3 41782896 41783265 -185741313 + L1ME1 LINE L1 2383 2770 -3376 4741 262 58 30 chr3 41783327 41785962 -185738616 + L1ME1 LINE L1 3401 6115 -51 21 36 0 0 chr3 41785989 41786017 -185738561 + AT_rich Low_complexity Low_complexity 1 28 0 1546 206 143 102 chr3 41786229 41786983 -185737595 + LTR1B LTR ERV1 1 826 0 783 246 75 39 chr3 41788303 41788584 -185735994 + LTR16A1 LTR ERVL 27 317 -140 1913 239 72 17 chr3 41788586 41789005 -185735573 + MLT2B1 LTR ERVL 1 442 -78 246 105 0 0 chr3 41789106 41789144 -185735434 + (CA)n Simple_repeat Simple_repeat 1 38 0 195 42 0 0 chr3 41789205 41789229 -185735349 + (TTCTC)n Simple_repeat Simple_repeat 4 27 0 271 243 0 27 chr3 41789235 41789309 -185735269 + LTR16A1 LTR ERVL 373 444 -13 202 261 0 14 chr3 41789402 41789471 -185735107 + CT-rich Low_complexity Low_complexity 1 68 0 24 0 0 0 chr3 41789648 41789672 -185734906 + AT_rich Low_complexity Low_complexity 1 24 0 5279 189 26 22 chr3 41789675 41791447 -185733131 - L1PA16 LINE L1 -11 6155 4381 1852 142 4 11 chr3 41791447 41791728 -185732850 - AluSx SINE Alu -33 279 1 5279 189 26 22 chr3 41791728 41792043 -185732535 - L1PA16 LINE L1 -1785 4381 4069 2191 96 0 7 chr3 41793007 41793289 -185731289 + AluSq SINE Alu 11 290 -23 382 248 145 55 chr3 41793913 41794224 -185730354 + LTR16C LTR ERVL 153 491 0 363 274 103 29 chr3 41794261 41794436 -185730142 + LTR16C LTR ERVL 301 488 -3 1707 176 24 0 chr3 41794564 41794853 -185729725 + AluJb SINE Alu 3 298 -14 2206 125 0 0 chr3 41795415 41795737 -185728841 + AluSx SINE Alu 1 322 0 870 221 9 28 chr3 41796140 41796357 -185728221 + L1ME3A LINE L1 5956 6168 -2 338 260 161 37 chr3 41796360 41796633 -185727945 + L1M4 LINE L1 5015 5321 -825 857 251 107 78 chr3 41796635 41796769 -185727809 + MLT1H LTR MaLR 87 216 -333 2140 103 4 4 chr3 41796769 41797077 -185727501 - AluSc SINE Alu 0 308 1 857 251 107 78 chr3 41797077 41797391 -185727187 + MLT1H LTR MaLR 216 549 0 324 0 0 0 chr3 41797446 41797482 -185727096 + (CA)n Simple_repeat Simple_repeat 1 36 0 1696 279 66 10 chr3 41798969 41799453 -185725125 + MLT1H LTR MaLR 3 513 -36 4249 66 2 25 chr3 41799453 41800044 -185724534 + L1PA8A LINE L1 5306 5882 -249 2691 194 24 26 chr3 41800042 41800706 -185723872 - L1 LINE L1 -814 5514 4852 * 6458 207 40 19 chr3 41800701 41800725 -185723853 - L1 LINE L1 -3572 2756 2734 2393 125 11 0 chr3 41800725 41801076 -185723502 - THE1A LTR MaLR 0 355 1 6458 207 40 19 chr3 41801076 41803750 -185720828 - L1 LINE L1 -3594 2734 3 2543 249 85 4 chr3 41803751 41804518 -185720060 - L1M4 LINE L1 -943 5701 4873 * 4742 238 101 23 chr3 41804509 41807485 -185717093 - L1M4 LINE L1 -2134 4510 1307 324 141 0 47 chr3 41807498 41807626 -185716952 + (TA)n Simple_repeat Simple_repeat 1 122 0 1428 256 82 87 chr3 41807631 41808121 -185716457 - L1M4 LINE L1 -5330 1212 721 216 0 0 0 chr3 41808121 41808145 -185716433 + (TA)n Simple_repeat Simple_repeat 2 25 0 1428 256 82 87 chr3 41808145 41808923 -185715655 - L1M4 LINE L1 -5821 721 1 229 241 48 12 chr3 41808982 41809065 -185715513 - L1P5 LINE L1 -705 5451 5366 390 288 97 44 chr3 41809075 41809301 -185715277 - L1M4 LINE L1 -832 5314 5077 48 60 0 0 chr3 41809322 41809405 -185715173 + AT_rich Low_complexity Low_complexity 1 83 0 202 172 17 17 chr3 41809775 41809833 -185714745 + (TTTAA)n Simple_repeat Simple_repeat 2 59 0 193 132 19 19 chr3 41809868 41809921 -185714657 + (TA)n Simple_repeat Simple_repeat 2 54 0 443 337 139 5 chr3 41811883 41812085 -185712493 + MIR SINE MIR 21 249 -13 621 320 79 8 chr3 41812405 41812911 -185711667 + L1MC4a LINE L1 4070 4611 -1535 24 0 0 0 chr3 41813394 41813418 -185711160 + AT_rich Low_complexity Low_complexity 1 24 0 342 318 112 14 chr3 41813508 41813931 -185710647 + L1MC4a LINE L1 5424 5657 -464 5240 209 25 24 chr3 41814099 41815758 -185708820 - L1MC1 LINE L1 0 6333 4678 1964 177 7 47 chr3 41815758 41816164 -185708414 - MLT1B LTR MaLR 0 390 1 5240 209 25 24 chr3 41816164 41816207 -185708371 - L1MC1 LINE L1 -1655 4678 4637 2286 142 15 88 chr3 41816207 41816568 -185708010 + Tigger2a DNA MER2_type 1 322 -2386 1864 141 18 0 chr3 41816568 41816851 -185707727 + AluSx SINE Alu 1 288 -24 2286 142 15 88 chr3 41816851 41816955 -185707623 + Tigger2a DNA MER2_type 322 432 -2 5240 209 25 24 chr3 41816955 41817291 -185707287 - L1MC1 LINE L1 -1696 4637 4302 1477 179 40 86 chr3 41817291 41817468 -185707110 + MLT1B LTR MaLR 1 156 -234 2030 137 13 0 chr3 41817468 41817775 -185706803 - AluSx SINE Alu -1 311 1 1477 179 40 86 chr3 41817775 41817946 -185706632 + MLT1B LTR MaLR 156 333 -57 4515 147 16 17 chr3 41817946 41818717 -185705861 - LTR1 LTR ERV1 0 785 16 359 153 0 0 chr3 41818715 41818774 -185705804 + MLT1B LTR MaLR 330 388 -2 * 2911 147 10 19 chr3 41820898 41821380 -185703198 - MER66A LTR ERV1 0 478 1 577 325 57 29 chr3 41822705 41822985 -185701593 + L2 LINE L2 2596 2883 -431 1187 335 32 3 chr3 41822995 41823371 -185701207 + LTR16C LTR ERVL 4 390 -101 3472 51 0 7 chr3 41823373 41823824 -185700754 - LTR7 LTR ERV1 -2 448 1 2396 84 47 16 chr3 41823824 41824204 -185700374 - HERVH LTR ERV1 0 7713 7322 1304 129 20 0 chr3 41824202 41824403 -185700175 - HERVH LTR ERV1 -1894 5819 5615 * 2570 163 0 0 chr3 41824437 41824848 -185699730 - HERVH LTR ERV1 -2564 5149 4739 925 162 0 7 chr3 41824846 41825000 -185699578 - HERVH LTR ERV1 -4069 3644 3492 * 899 122 27 0 chr3 41824990 41825137 -185699441 - HERVH LTR ERV1 -4423 3290 3140 * 1650 131 0 25 chr3 41825116 41825399 -185699179 - HERVH LTR ERV1 -4718 2995 2720 286 289 13 0 chr3 41825400 41825476 -185699102 + LTR16C LTR ERVL 415 491 0 21 0 0 0 chr3 41825700 41825721 -185698857 + AT_rich Low_complexity Low_complexity 1 21 0 28 95 0 0 chr3 41826024 41826108 -185698470 + AT_rich Low_complexity Low_complexity 1 84 0 1084 274 26 39 chr3 41826152 41826609 -185697969 + L1MD2 LINE L1 3171 3621 -2525 483 115 164 8 chr3 41826582 41826704 -185697874 + L1MDa LINE L1 2451 2591 -3949 * 1651 253 25 20 chr3 41826701 41827254 -185697324 + L1MD2 LINE L1 4275 4830 -1710 901 269 97 7 chr3 41827350 41827659 -185696919 + MER2 DNA MER2_type 9 345 0 3261 230 87 34 chr3 41827659 41828149 -185696429 + L1MD2 LINE L1 4833 5295 -1458 270 0 0 0 chr3 41828149 41828179 -185696399 + (CAA)n Simple_repeat Simple_repeat 1 30 0 3261 230 87 34 chr3 41828179 41828826 -185695752 + L1MD2 LINE L1 5295 5906 -847 869 166 6 6 chr3 41828826 41828995 -185695583 + L1MA10 LINE L1 6163 6331 -3 3261 230 87 34 chr3 41828995 41829657 -185694921 + L1MD2 LINE L1 5906 6734 -19 1633 205 3 0 chr3 41829906 41830199 -185694379 - AluJo SINE Alu -14 298 5 47 44 0 0 chr3 41830420 41830488 -185694090 + AT_rich Low_complexity Low_complexity 1 68 0 23 0 0 0 chr3 41830523 41830546 -185694032 + AT_rich Low_complexity Low_complexity 1 23 0 254 315 139 12 chr3 41831834 41831999 -185692579 - MIR SINE MIR 0 262 77 253 281 94 31 chr3 41832281 41832377 -185692201 + L2 LINE L2 3203 3304 -9 186 290 130 0 chr3 41832923 41832992 -185691586 - MIR3 SINE MIR 0 208 131 1127 148 23 0 chr3 41833520 41833737 -185690841 - L1MA4 LINE L1 -5 6295 6074 331 274 55 14 chr3 41834061 41834207 -185690371 - L1ME3A LINE L1 -20 6150 5999 226 328 0 0 chr3 41835254 41835315 -185689263 + CT-rich Low_complexity Low_complexity 3 63 0 195 203 0 0 chr3 41835723 41835782 -185688796 + (TA)n Simple_repeat Simple_repeat 1 59 0 7959 10 0 0 chr3 41835784 41836943 -185687635 - L1HS LINE L1 -2 6153 4995 * 22448 23 0 0 chr3 41836940 41839607 -185684971 + L1HS LINE L1 2314 4980 -1166 181 164 18 18 chr3 41839985 41840040 -185684538 + (TA)n Simple_repeat Simple_repeat 2 56 0 21 36 0 0 chr3 41840064 41840092 -185684486 + AT_rich Low_complexity Low_complexity 1 28 0 585 254 83 16 chr3 41840154 41840347 -185684231 + MIR SINE MIR 55 260 -2 246 242 22 55 chr3 41840387 41840478 -185684100 - L1ME3A LINE L1 -2306 5502 5415 3292 135 2 38 chr3 41840549 41841126 -185683452 - L1PA15 LINE L1 -6 6159 5604 22 35 0 0 chr3 41841212 41841241 -185683337 + AT_rich Low_complexity Low_complexity 1 29 0 289 306 112 15 chr3 41841466 41841672 -185682906 + L1MC/D LINE L1 5598 5823 -1985 1493 144 125 13 chr3 41841783 41842088 -185682490 - MER44D DNA MER2_type 0 609 1 594 311 170 45 chr3 41842285 41842791 -185681787 - L1ME3A LINE L1 -1162 4984 4543 1874 163 3 7 chr3 41842791 41843092 -185681486 - AluSx SINE Alu -11 301 2 594 311 170 45 chr3 41843092 41843402 -185681176 - L1ME3A LINE L1 -1603 4543 4066 2268 72 14 0 chr3 41843416 41843708 -185680870 - AluY SINE Alu -15 296 1 459 211 44 44 chr3 41843916 41844030 -185680548 + FLAM_C SINE Alu 13 126 -17 422 274 54 62 chr3 41844880 41845121 -185679457 - L2 LINE L2 -2 3311 3073 397 361 72 6 chr3 41845378 41845558 -185679020 - MIR3 SINE MIR -7 201 10 188 352 9 9 chr3 41845658 41845763 -185678815 - MIR SINE MIR -10 252 148 3695 186 53 3 chr3 41846082 41846823 -185677755 - L1MC2 LINE L1 -22 6322 5545 367 345 94 23 chr3 41846820 41847255 -185677323 - L1ME LINE L1 -348 5822 5357 * 520 267 131 10 chr3 41847319 41847525 -185677053 - MIR SINE MIR 0 262 32 1906 156 29 73 chr3 41848069 41848437 -185676141 - L1MA6 LINE L1 -6 6294 5944 2032 124 3 0 chr3 41848437 41848720 -185675858 - AluSx SINE Alu -28 284 1 1906 156 29 73 chr3 41848720 41848762 -185675816 - L1MA6 LINE L1 -356 5944 5902 234 319 34 34 chr3 41848757 41848961 -185675617 - L1ME LINE L1 -1460 4686 4483 * 1848 137 14 73 chr3 41849083 41849440 -185675138 - MER1B DNA MER1_type 0 337 2 180 0 0 0 chr3 41849748 41849768 -185674810 + (TG)n Simple_repeat Simple_repeat 2 21 0 937 153 0 7 chr3 41849945 41850095 -185674483 - L1M1 LINE L1 -6634 931 783 3227 190 82 9 chr3 41850169 41851053 -185673525 - L1M LINE L1 -745 5401 4472 19223 172 56 22 chr3 41851056 41853632 -185670946 + L1M1 LINE L1 13 2500 -5065 2074 96 24 20 chr3 41853632 41853925 -185670653 + AluSg1 SINE Alu 1 294 -15 19223 172 56 22 chr3 41853925 41855048 -185669530 + L1M1 LINE L1 2500 3583 -3982 2122 132 0 0 chr3 41855048 41855351 -185669227 + AluSq SINE Alu 10 312 -1 19223 172 56 22 chr3 41855351 41857133 -185667445 + L1M1 LINE L1 3583 5688 -1877 2326 86 0 3 chr3 41857137 41857440 -185667138 + AluY SINE Alu 1 302 -9 5761 90 26 5 chr3 41857455 41858303 -185666275 + L1MA1 LINE L1 5429 6298 -4 961 260 124 49 chr3 41859287 41859753 -185664825 + MLT1H LTR MaLR 9 509 -40 25 31 0 0 chr3 41860006 41860038 -185664540 + AT_rich Low_complexity Low_complexity 1 32 0 301 226 81 65 chr3 41860110 41860234 -185664344 - L1ME4a LINE L1 -5 6116 5991 198 118 0 0 chr3 41860373 41860407 -185664171 + (CA)n Simple_repeat Simple_repeat 1 34 0 180 152 0 0 chr3 41861459 41861492 -185663086 + GA-rich Low_complexity Low_complexity 3 35 0 377 316 60 0 chr3 41861516 41861684 -185662894 + Charlie8 DNA MER1_type 100 277 -2140 651 213 143 71 chr3 41862079 41862470 -185662108 + LTR30 LTR ERV1 238 587 -9 21276 276 32 35 chr3 41862481 41869097 -185655481 + HERV3 LTR ERV1 1 6594 -1832 631 260 95 38 chr3 41869540 41869943 -185654635 + LTR30 LTR ERV1 112 493 0 736 182 16 0 chr3 41869985 41870106 -185654472 + FLAM_A SINE Alu 1 123 -10 826 233 33 38 chr3 41870415 41870625 -185653953 - MER63A DNA MER1_type 0 210 2 461 270 147 21 chr3 41870746 41871068 -185653510 + MLT1G LTR MaLR 170 588 -2 1255 281 41 20 chr3 41871953 41872720 -185651858 - L1ME LINE L1 -669 5497 4719 370 165 44 11 chr3 41872763 41872854 -185651724 - L1MA6 LINE L1 0 6300 6207 447 180 46 1 chr3 41872854 41872951 -185651627 + L1MA6 LINE L1 5986 6085 -215 202 70 0 47 chr3 41873019 41873062 -185651516 + (TTTA)n Simple_repeat Simple_repeat 2 42 0 855 71 0 0 chr3 41873064 41873176 -185651402 - L1PB1 LINE L1 -13 6138 6027 1209 140 145 4 chr3 41873208 41873443 -185651135 + MLT1B LTR MaLR 123 390 0 210 279 241 0 chr3 41873910 41873989 -185650589 - MER5A DNA MER1_type -83 106 9 351 0 0 0 chr3 41874370 41874409 -185650169 + (TA)n Simple_repeat Simple_repeat 2 40 0 200 135 0 19 chr3 41874778 41874830 -185649748 + (TA)n Simple_repeat Simple_repeat 2 52 0 1161 232 23 68 chr3 41874855 41875209 -185649369 + MLT1A2 LTR MaLR 37 374 0 2546 230 85 0 chr3 41875209 41875809 -185648769 + MLT1A2-int LTR MaLR 1 651 -1084 495 153 46 69 chr3 41875839 41875970 -185648608 + MLT1B LTR MaLR 229 356 -34 1171 191 80 78 chr3 41876372 41876759 -185647819 + MLT1B LTR MaLR 1 388 -2 435 178 22 49 chr3 41877285 41877470 -185647108 + CT-rich Low_complexity Low_complexity 1 180 0 2367 96 3 0 chr3 41877472 41877774 -185646804 - AluSp SINE Alu -7 306 4 203 179 0 0 chr3 41877790 41877829 -185646749 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 213 211 0 19 chr3 41878219 41878271 -185646307 + CT-rich Low_complexity Low_complexity 2 52 0 330 294 106 17 chr3 41878668 41878848 -185645730 - MIR SINE MIR -32 230 35 641 275 109 22 chr3 41879011 41879240 -185645338 - MIR SINE MIR -13 249 1 1998 124 0 27 chr3 41879354 41879653 -185644925 - AluSx SINE Alu -16 296 6 545 227 40 0 chr3 41880288 41880438 -185644140 - MER3 DNA MER1_type -87 122 14 608 354 48 15 chr3 41880585 41880921 -185643657 + MLT1I LTR MaLR 63 409 0 1674 247 21 5 chr3 41882026 41882742 -185641836 + L1M4c LINE L1 2097 2825 -3557 316 125 0 0 chr3 41882751 41882799 -185641779 - L1P LINE L1 -807 5367 5320 4560 124 48 3 chr3 41882801 41883553 -185641025 + L1PA13 LINE L1 5374 6159 -4 290 173 13 27 chr3 41883568 41883643 -185640935 + L1M4c LINE L1 2811 2884 -3498 1952 155 33 41 chr3 41883643 41884010 -185640568 - THE1B LTR MaLR 0 364 1 10662 103 10 42 chr3 41884010 41884071 -185640507 - THE1B-int LTR MaLR 0 1580 1519 268 125 0 0 chr3 41884071 41884111 -185640467 + tRNA-Gly-GGA tRNA tRNA 1 40 -35 10662 103 10 42 chr3 41884111 41885199 -185639379 - THE1B-int LTR MaLR -61 1519 454 2108 144 0 3 chr3 41885199 41885512 -185639066 - AluSp SINE Alu -1 312 1 10662 103 10 42 chr3 41885512 41885953 -185638625 - THE1B-int LTR MaLR -1126 454 1 1724 161 38 52 chr3 41885955 41886322 -185638256 - THE1B LTR MaLR -2 362 1 687 152 0 198 chr3 41886322 41886585 -185637993 + L1M4c LINE L1 2880 3090 -3292 183 218 0 0 chr3 41886665 41886720 -185637858 + (TA)n Simple_repeat Simple_repeat 1 55 0 27 0 0 0 chr3 41886720 41886747 -185637831 + AT_rich Low_complexity Low_complexity 1 27 0 485 97 79 0 chr3 41886750 41886915 -185637663 + (TA)n Simple_repeat Simple_repeat 1 178 0 212 96 77 0 chr3 41886917 41886969 -185637609 + (TATAA)n Simple_repeat Simple_repeat 5 60 0 593 144 27 10 chr3 41886971 41887275 -185637303 + (TA)n Simple_repeat Simple_repeat 1 309 0 307 277 27 45 chr3 41887277 41887389 -185637189 - L1MC4 LINE L1 -1340 6702 6593 579 95 66 5 chr3 41887396 41887806 -185636772 + (TA)n Simple_repeat Simple_repeat 1 435 0 306 241 0 38 chr3 41888238 41888317 -185636261 - MER58C DNA MER1_type -16 199 124 363 301 19 0 chr3 41888382 41888485 -185636093 - MER58C DNA MER1_type -110 105 1 1590 267 139 56 chr3 41888485 41889637 -185634941 + L1MC4 LINE L1 6727 7974 -68 7424 39 0 0 chr3 41889648 41890769 -185633809 - L1PA5 LINE L1 -4 6150 5031 288 133 0 0 chr3 41890881 41890941 -185633637 + (C)n Simple_repeat Simple_repeat 1 60 0 212 344 8 16 chr3 41890985 41891113 -185633465 + CT-rich Low_complexity Low_complexity 2 128 0 856 299 134 43 chr3 41891699 41892451 -185632127 - L1M4 LINE L1 -5721 821 1 364 290 81 54 chr3 41892607 41892828 -185631750 - L1M4 LINE L1 -843 5303 5077 48 60 0 0 chr3 41892849 41892932 -185631646 + AT_rich Low_complexity Low_complexity 1 83 0 43 75 0 0 chr3 41893259 41893339 -185631239 + GC_rich Low_complexity Low_complexity 1 80 0 388 206 27 54 chr3 41893339 41893523 -185631055 + (CCCCG)n Simple_repeat Simple_repeat 1 179 0 23 87 0 0 chr3 41893545 41893591 -185630987 + GC_rich Low_complexity Low_complexity 1 46 0 25 31 0 0 chr3 41894290 41894322 -185630256 + AT_rich Low_complexity Low_complexity 1 32 0 229 220 0 17 chr3 41894408 41894467 -185630111 - tRNA-Lys-AAA tRNA tRNA -13 63 6 383 218 129 68 chr3 41895360 41895550 -185629028 - AluSg SINE Alu -197 103 2 421 127 66 0 chr3 41895966 41896132 -185628446 + (TA)n Simple_repeat Simple_repeat 1 177 0 81 0 0 0 chr3 41896132 41896213 -185628365 + AT_rich Low_complexity Low_complexity 1 81 0 638 116 64 2 chr3 41896213 41896750 -185627828 + (TA)n Simple_repeat Simple_repeat 1 570 0 21 0 0 0 chr3 41897085 41897106 -185627472 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 41897704 41897735 -185626843 + AT_rich Low_complexity Low_complexity 1 31 0 5153 118 85 0 chr3 41898076 41899265 -185625313 + L1PA11 LINE L1 4917 6174 0 399 307 127 36 chr3 41899474 41899806 -185624772 + MLT1J1 LTR MaLR 11 372 -74 2085 141 0 0 chr3 41899863 41900169 -185624409 - AluSx SINE Alu -6 306 1 298 352 56 50 chr3 41900247 41900727 -185623851 - L2 LINE L2 -882 2432 1950 427 246 132 0 chr3 41900760 41900874 -185623704 - MER94 DNA DNA -5 129 1 352 390 60 39 chr3 41902601 41902684 -185621894 + L2 LINE L2 2368 2448 -866 1973 95 4 4 chr3 41902684 41902957 -185621621 + AluSc SINE Alu 1 273 -36 321 26 0 0 chr3 41902957 41902995 -185621583 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 352 390 60 39 chr3 41902995 41903261 -185621317 + L2 LINE L2 2448 2729 -585 2307 94 0 3 chr3 41903261 41903568 -185621010 - AluSc SINE Alu -3 306 1 352 390 60 39 chr3 41903568 41903601 -185620977 + L2 LINE L2 2729 2760 -554 1475 234 116 46 chr3 41903613 41904131 -185620447 + MLT2B3 LTR ERVL 1 554 0 1641 144 89 0 chr3 41904213 41904483 -185620095 - AluSx SINE Alu -18 294 1 279 371 153 33 chr3 41904528 41904803 -185619775 + L2 LINE L2 3006 3313 0 183 170 21 106 chr3 41905161 41905208 -185619370 - MIR SINE MIR -150 112 70 622 229 201 6 chr3 41905738 41905917 -185618661 + MER20 DNA MER1_type 1 214 -5 249 254 48 0 chr3 41905971 41906034 -185618544 + MIR SINE MIR 66 131 -131 2202 135 25 28 chr3 41907274 41907674 -185616904 - LTR23 LTR ERV1 -38 399 1 618 245 14 0 chr3 41907674 41907821 -185616757 - LTR23-int LTR ERV1 0 5123 4975 215 303 0 13 chr3 41907905 41907981 -185616597 - L2 LINE L2 -1081 2233 2159 202 211 26 0 chr3 41908049 41908087 -185616491 - L2 LINE L2 -13 3300 3262 236 328 64 35 chr3 41908183 41908354 -185616224 - MIR SINE MIR -86 176 1 227 333 106 0 chr3 41908730 41908919 -185615659 - HAL1 LINE L1 -869 1638 1430 * 388 30 30 25 chr3 41908899 41908965 -185615613 - L1PA13 LINE L1 -83 6078 6018 652 85 0 0 chr3 41908967 41909061 -185615517 + L1PA13 LINE L1 6067 6160 -3 343 335 37 50 chr3 41909206 41909448 -185615130 - HAL1 LINE L1 -1232 1275 1037 275 268 119 55 chr3 41910063 41910373 -185614205 + L1M4 LINE L1 4518 4847 -1299 1994 149 37 16 chr3 41911452 41911828 -185612750 - L1MA3 LINE L1 -1 6304 5921 795 260 12 6 chr3 41912887 41913056 -185611522 + MER45A DNA AcHobo 9 178 0 345 295 52 24 chr3 41914926 41915070 -185609508 + MIR SINE MIR 20 163 -45 441 390 56 17 chr3 41915095 41915326 -185609252 + L2 LINE L2 2437 2676 -638 189 0 0 0 chr3 41915827 41915848 -185608730 + (TGAA)n Simple_repeat Simple_repeat 4 24 0 316 339 92 50 chr3 41916294 41916512 -185608066 + L2 LINE L2 3032 3258 -14 823 313 0 27 chr3 41917532 41917788 -185606790 + MIR SINE MIR 14 262 0 277 392 54 8 chr3 41917826 41917956 -185606622 + L2 LINE L2 3125 3260 -12 215 221 63 84 chr3 41917933 41918028 -185606550 - MIR3 SINE MIR -6 202 110 * 2300 110 0 0 chr3 41918383 41918682 -185605896 + AluSg SINE Alu 11 309 -1 294 299 17 34 chr3 41918885 41919002 -185605576 - MIR SINE MIR -116 146 32 610 191 107 0 chr3 41919158 41919289 -185605289 + L1MEc LINE L1 35 179 -6217 1996 225 57 64 chr3 41919293 41920054 -185604524 + L1M4 LINE L1 3949 4703 -1443 2154 113 0 10 chr3 41920056 41920357 -185604221 + AluSc SINE Alu 1 298 -11 629 250 140 0 chr3 41920385 41920549 -185604029 + L1PA15 LINE L1 14 200 -7381 * 1168 187 4 17 chr3 41920547 41920788 -185603790 + L1PA15 LINE L1 2828 3065 -4509 7426 191 18 13 chr3 41920798 41921913 -185602665 + L1PA15 LINE L1 5029 6156 -1428 216 0 0 0 chr3 41921913 41921937 -185602641 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 7426 191 18 13 chr3 41921937 41922408 -185602170 + L1PA15 LINE L1 6156 6623 -961 22567 171 33 32 chr3 41922416 41924451 -185600127 + L1PA10 LINE L1 35 2066 -4417 2107 132 3 7 chr3 41924451 41924754 -185599824 - AluSq SINE Alu -11 302 1 22567 171 33 32 chr3 41924754 41929040 -185595538 + L1PA10 LINE L1 2066 6446 -37 558 29 0 0 chr3 41929045 41929113 -185595465 + (TAAAA)n Simple_repeat Simple_repeat 3 70 0 5227 140 22 15 chr3 41929113 41930096 -185594482 + L1PA15 LINE L1 6615 7599 -4 1612 239 53 23 chr3 41930090 41930697 -185593881 + L1ME1 LINE L1 4695 5319 -827 * 936 169 12 12 chr3 41930709 41930875 -185593703 + FRAM SINE Alu 1 165 -11 2368 254 82 11 chr3 41930888 41931710 -185592868 + L1ME1 LINE L1 5298 6334 0 428 280 19 79 chr3 41933103 41933317 -185591261 + L2 LINE L2 3108 3308 -5 415 325 38 0 chr3 41933381 41933538 -185591040 - LTR16B LTR ERVL -301 163 1 279 224 28 149 chr3 41934198 41934260 -185590318 - L2 LINE L2 -25 3247 3202 654 135 0 0 chr3 41934260 41934364 -185590214 + L1PB4 LINE L1 6053 6156 0 279 224 28 149 chr3 41934364 41934408 -185590170 - L2 LINE L2 -70 3202 3154 315 292 182 24 chr3 41934552 41934761 -185589817 + MIR SINE MIR 1 242 -20 427 341 56 14 chr3 41935621 41935835 -185588743 - MER90 LTR ERV1 -202 412 190 200 330 59 17 chr3 41936140 41936258 -185588320 + L2 LINE L2 2658 2780 -534 282 318 37 28 chr3 41937779 41937886 -185586692 + L2 LINE L2 2651 2758 -556 311 206 500 0 chr3 41938190 41938316 -185586262 - MER5A DNA MER1_type 0 189 1 199 333 0 0 chr3 41938546 41938615 -185585963 + MIR SINE MIR 150 218 -44 315 244 15 82 chr3 41939189 41939324 -185585254 - LTR16C LTR ERVL 0 491 366 2408 79 0 7 chr3 41939377 41939681 -185584897 - AluY SINE Alu -8 303 2 214 303 185 17 chr3 41939973 41940151 -185584427 - MIR SINE MIR -51 211 4 21 71 0 0 chr3 41940475 41940517 -185584061 + AT_rich Low_complexity Low_complexity 1 42 0 11049 216 66 29 chr3 41940803 41944227 -185580351 + L1PA16 LINE L1 2009 5604 -562 183 42 0 0 chr3 41944227 41944251 -185580327 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 11049 216 66 29 chr3 41944251 41944836 -185579742 + L1PA16 LINE L1 5604 6166 0 225 281 0 18 chr3 41945066 41945123 -185579455 - MLT2F LTR ERVL -502 161 106 1851 191 0 9 chr3 41945608 41945923 -185578655 + AluJo SINE Alu 1 312 0 24 53 0 0 chr3 41946575 41946613 -185577965 + AT_rich Low_complexity Low_complexity 1 38 0 2804 10 0 3 chr3 41946651 41946961 -185577617 - AluYa5 SINE Alu -2 309 1 773 305 72 72 chr3 41947897 41948399 -185576179 - MLT1J LTR MaLR -9 502 1 470 235 33 33 chr3 41948603 41948786 -185575792 + HAL1b LINE L1 665 847 -501 18151 191 85 31 chr3 41949576 41954705 -185569873 + L1P3 LINE L1 5 5426 -1035 692 92 0 0 chr3 41954713 41954800 -185569778 + L1PA4 LINE L1 12 98 -6048 * 36105 52 4 3 chr3 41954798 41960318 -185564260 + L1PA4 LINE L1 623 6163 -170 6202 103 10 0 chr3 41960318 41961372 -185563206 + L1PA10 LINE L1 5098 6164 -4 36105 52 4 3 chr3 41961372 41961544 -185563034 + L1PA4 LINE L1 6163 6333 0 26 30 0 0 chr3 41963082 41963115 -185561463 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr3 41963125 41963153 -185561425 + AT_rich Low_complexity Low_complexity 1 28 0 2009 137 35 29 chr3 41963155 41963498 -185561080 + THE1B LTR MaLR 1 345 -19 5846 122 7 9 chr3 41963498 41964350 -185560228 + THE1B-int LTR MaLR 3 852 -728 26 30 0 0 chr3 41964943 41964976 -185559602 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr3 41964986 41965014 -185559564 + AT_rich Low_complexity Low_complexity 1 28 0 1984 140 35 29 chr3 41965016 41965359 -185559219 + THE1B LTR MaLR 1 345 -19 633 85 28 19 chr3 41965359 41965465 -185559113 + THE1B-int LTR MaLR 3 109 -1471 9373 40 0 0 chr3 41967214 41968360 -185556218 + L1P LINE L1 1689 2834 -3312 260 271 9 6 chr3 41968974 41969084 -185555494 - MER5A DNA MER1_type -6 183 10 966 194 71 8 chr3 41969103 41969371 -185555207 + MER33 DNA MER1_type 4 288 -36 194 297 31 0 chr3 41969389 41969453 -185555125 - MER5A DNA MER1_type 0 189 124 723 247 41 0 chr3 41969546 41969716 -185554862 - MER5A DNA MER1_type 0 189 13 280 259 0 14 chr3 41970487 41970603 -185553975 - MER5A DNA MER1_type 0 189 10 256 294 92 98 chr3 41971598 41971782 -185552796 - L2 LINE L2 0 3272 3090 594 324 28 6 chr3 41971832 41972014 -185552564 - MIR SINE MIR -10 252 67 303 213 27 27 chr3 41972106 41972181 -185552397 - L2 LINE L2 -12 3260 3186 2298 84 3 3 chr3 41972219 41972517 -185552061 + AluSc SINE Alu 1 298 -11 180 0 0 0 chr3 41972810 41972830 -185551748 + (A)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr3 41972830 41972853 -185551725 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 41972867 41972890 -185551688 + GC_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr3 41972900 41972924 -185551654 + GC_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr3 41972938 41972964 -185551614 + GC_rich Low_complexity Low_complexity 1 26 0 1628 151 60 28 chr3 41976897 41977182 -185547396 + AluSx SINE Alu 2 295 -17 303 288 112 53 chr3 41977476 41977646 -185546932 - L2 LINE L2 -1 3312 3133 994 305 25 25 chr3 41977667 41978031 -185546547 - MLT1H LTR MaLR -2 547 184 268 236 9 9 chr3 41978665 41978771 -185545807 + (TA)n Simple_repeat Simple_repeat 1 106 0 2259 163 3 8 chr3 41978775 41979144 -185545434 + THE1C-int LTR MaLR 1086 1452 -128 944 34 62 34 chr3 41979333 41979479 -185545099 + THE1C-int LTR MaLR 1431 1580 0 2431 94 42 8 chr3 41979479 41979840 -185544738 + THE1C LTR MaLR 1 373 -2 272 236 11 0 chr3 41979841 41979930 -185544648 + (TA)n Simple_repeat Simple_repeat 2 91 0 576 278 114 0 chr3 41981295 41981471 -185543107 + MIR SINE MIR 67 262 0 303 203 29 14 chr3 41981560 41981629 -185542949 - MIR3 SINE MIR -25 183 114 21 36 0 0 chr3 41982419 41982447 -185542131 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr3 41983092 41983134 -185541444 + AT_rich Low_complexity Low_complexity 1 42 0 180 361 16 25 chr3 41983195 41983317 -185541261 + MIR3 SINE MIR 85 205 -3 237 65 0 0 chr3 41983900 41983931 -185540647 + (TTG)n Simple_repeat Simple_repeat 3 33 0 1227 192 95 32 chr3 41987230 41987568 -185537010 + MLT1A1 LTR MaLR 5 363 -2 6874 216 82 37 chr3 41987568 41989220 -185535358 + MLT1A1-int LTR MaLR 3 1729 -6 1402 162 110 55 chr3 41989225 41989571 -185535007 + MLT1A1 LTR MaLR 1 365 0 204 40 0 0 chr3 41989762 41989787 -185534791 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 401 324 71 0 chr3 41990264 41990434 -185534144 - MIR SINE MIR -6 256 75 1767 214 20 8 chr3 41990445 41990801 -185533777 - MLT1A1 LTR MaLR -5 360 1 236 207 17 17 chr3 41991657 41991715 -185532863 + CT-rich Low_complexity Low_complexity 1 58 0 924 114 0 0 chr3 41991755 41991895 -185532683 + (TTCC)n Simple_repeat Simple_repeat 3 142 0 251 120 0 40 chr3 41991895 41991945 -185532633 + (TTTTC)n Simple_repeat Simple_repeat 1 48 0 622 205 21 156 chr3 41991995 41992335 -185532243 - MER58B DNA MER1_type 0 341 45 1486 197 91 19 chr3 41992587 41992948 -185531630 - MLT1B LTR MaLR -3 387 1 954 144 39 6 chr3 41992966 41993147 -185531431 + MER96B DNA MER1_type? 49 235 -182 190 263 0 53 chr3 41993652 41993709 -185530869 - MIR SINE MIR -123 139 86 315 353 108 6 chr3 41994799 41994966 -185529612 + MIR SINE MIR 8 191 -71 363 183 158 0 chr3 41994966 41995048 -185529530 + MER69A DNA AcHobo 19 113 -64 234 288 0 0 chr3 41995398 41995457 -185529121 - L2 LINE L2 -1741 1573 1515 630 342 8 23 chr3 41995487 41995744 -185528834 - MIR SINE MIR -8 254 2 931 325 118 37 chr3 41996059 41996241 -185528337 - L2 LINE L2 -1979 1335 1169 2237 121 19 19 chr3 41996241 41996605 -185527973 - THE1B LTR MaLR 0 364 1 931 325 118 37 chr3 41996605 41997123 -185527455 - L2 LINE L2 -2145 1169 578 722 233 20 0 chr3 41997199 41997345 -185527233 + MER58A DNA MER1_type 2 150 0 302 306 99 16 chr3 41997405 41997526 -185527052 - L2 LINE L2 -2845 469 339 377 372 14 46 chr3 41998161 41998379 -185526199 - L2 LINE L2 -3029 285 75 283 204 265 0 chr3 41998397 41998495 -185526083 + MER5C DNA MER1_type 1 124 -200 211 180 18 171 chr3 41998504 41998615 -185525963 + MER5C DNA MER1_type 226 319 -5 357 140 0 0 chr3 41998659 41998716 -185525862 + L1MB5 LINE L1 6032 6088 -86 30 27 0 0 chr3 41998716 41998753 -185525825 + AT_rich Low_complexity Low_complexity 1 37 0 1925 201 8 13 chr3 41998880 41999272 -185525306 - MLT1B LTR MaLR 0 390 1 461 254 203 35 chr3 42000452 42000690 -185523888 + LTR16A LTR ERVL 126 408 -49 468 327 36 0 chr3 42001486 42001654 -185522924 + MIR SINE MIR 47 220 -42 200 327 9 80 chr3 42001737 42001850 -185522728 + MIR3 SINE MIR 93 197 -11 233 275 65 46 chr3 42001881 42002011 -185522567 - MIR SINE MIR -65 143 21 315 0 0 0 chr3 42002557 42002592 -185521986 + (T)n Simple_repeat Simple_repeat 1 35 0 360 357 46 8 chr3 42002592 42002851 -185521727 + L2 LINE L2 2752 3020 -252 360 317 79 30 chr3 42003216 42003380 -185521198 - MIR SINE MIR -71 191 20 433 316 51 55 chr3 42003431 42003684 -185520894 - MIR SINE MIR -8 254 3 180 152 0 0 chr3 42004246 42004279 -185520299 + (TAA)n Simple_repeat Simple_repeat 2 34 0 730 186 0 0 chr3 42004307 42004431 -185520147 - AluJb SINE Alu -188 124 1 199 350 29 29 chr3 42004492 42004595 -185519983 - MIR SINE MIR -63 145 63 322 317 75 19 chr3 42004736 42004897 -185519681 - MIR SINE MIR -91 171 2 435 305 80 19 chr3 42005069 42005472 -185519106 - L1 LINE L1 -2285 3861 3428 716 292 30 30 chr3 42005474 42005779 -185518799 - MLT2C1 LTR ERVL -3 394 90 32196 78 11 3 chr3 42005786 42010849 -185513729 + L1P LINE L1 7 5111 -1035 659 92 0 0 chr3 42010857 42010944 -185513634 + L1PA4 LINE L1 12 98 -6048 * 36403 53 6 3 chr3 42010942 42016456 -185508122 + L1PA4 LINE L1 623 6163 -170 6118 106 10 0 chr3 42016456 42017508 -185507070 + L1PA10 LINE L1 5098 6164 -4 36403 53 6 3 chr3 42017508 42017680 -185506898 + L1PA4 LINE L1 6163 6333 0 26 30 0 0 chr3 42019219 42019252 -185505326 + AT_rich Low_complexity Low_complexity 1 33 0 21 36 0 0 chr3 42019262 42019290 -185505288 + AT_rich Low_complexity Low_complexity 1 28 0 1859 140 35 29 chr3 42019292 42019635 -185504943 + THE1B LTR MaLR 1 345 -19 10969 119 6 6 chr3 42019635 42021213 -185503365 + THE1B-int LTR MaLR 3 1580 0 1973 144 44 39 chr3 42021213 42021575 -185503003 + THE1B LTR MaLR 1 364 0 202 263 114 35 chr3 42023644 42023758 -185500820 + L2 LINE L2 3178 3300 -13 340 311 81 7 chr3 42024940 42025088 -185499490 + L3 LINE CR1 1343 1501 -76 581 260 61 22 chr3 42025165 42025346 -185499232 - L2 LINE L2 0 3313 3126 211 358 73 32 chr3 42025430 42025648 -185498930 - MIR SINE MIR 0 262 36 1684 240 9 14 chr3 42026067 42026532 -185498046 + L1ME3 LINE L1 5684 6155 -7 1782 168 0 48 chr3 42027209 42027525 -185497053 + AluJo SINE Alu 1 301 -11 429 260 83 88 chr3 42027947 42028002 -185496576 - MER5A DNA MER1_type -9 180 126 1929 125 0 7 chr3 42028002 42028282 -185496296 + AluSp SINE Alu 28 305 -8 429 260 83 88 chr3 42028282 42028407 -185496171 - MER5A DNA MER1_type -63 126 1 191 348 62 54 chr3 42028500 42028759 -185495819 - L2 LINE L2 -643 2671 2411 516 243 85 79 chr3 42029145 42029196 -185495382 - MER5A DNA MER1_type -11 178 129 1975 125 0 4 chr3 42029196 42029475 -185495103 + AluSp SINE Alu 28 305 -8 516 243 85 79 chr3 42029475 42029600 -185494978 - MER5A DNA MER1_type -60 129 1 227 351 58 50 chr3 42029693 42029952 -185494626 - L2 LINE L2 -643 2671 2411 494 233 40 20 chr3 42031875 42032025 -185492553 - LTR33 LTR ERVL -258 263 111 282 313 14 0 chr3 42032997 42033144 -185491434 - L1ME3A LINE L1 -197 6042 5894 1592 168 27 0 chr3 42033365 42033621 -185490957 + AluJb SINE Alu 45 307 -5 255 243 196 14 chr3 42033630 42033778 -185490800 - L1ME3A LINE L1 -647 5586 5412 230 292 138 26 chr3 42033845 42034352 -185490226 - L1ME3A LINE L1 -852 5363 4800 448 241 77 79 chr3 42034550 42035043 -185489535 - L1ME3A LINE L1 -2160 4055 3564 21 36 0 0 chr3 42035095 42035123 -185489455 + AT_rich Low_complexity Low_complexity 1 28 0 639 287 70 20 chr3 42035160 42035561 -185489017 - L1ME3A LINE L1 -5398 998 578 326 255 75 31 chr3 42035650 42035811 -185488767 + L1MEc LINE L1 233 400 -5996 259 313 14 21 chr3 42035795 42035939 -185488639 - L1ME3A LINE L1 -6218 178 36 * 2668 243 93 30 chr3 42035963 42036482 -185488096 - L1MC4 LINE L1 -374 7668 7183 2215 80 26 7 chr3 42036482 42036784 -185487794 - AluY SINE Alu -3 308 1 2668 243 93 30 chr3 42036784 42037398 -185487180 - L1MC4 LINE L1 -859 7183 6463 2317 232 42 42 chr3 42037660 42038246 -185486332 - L1MC3 LINE L1 -1 7784 7196 3492 144 21 38 chr3 42038246 42038859 -185485719 + LTR26 LTR ERV1 1 603 0 2317 232 42 42 chr3 42038859 42039009 -185485569 - L1MC3 LINE L1 -588 7197 7048 681 325 84 46 chr3 42039716 42040301 -185484277 - L1MEd LINE L1 -5511 608 2 198 302 87 70 chr3 42040715 42040887 -185483691 - MIR SINE MIR -4 258 84 1433 272 48 7 chr3 42041992 42042426 -185482152 + LTR16A1 LTR ERVL 6 457 0 241 350 94 19 chr3 42044310 42044470 -185480108 + MIR SINE MIR 21 192 -70 224 314 59 85 chr3 42044528 42044646 -185479932 - L2 LINE L2 -20 3252 3138 283 274 63 32 chr3 42045260 42045355 -185479223 - MIR SINE MIR -64 144 47 1349 279 139 28 chr3 42046531 42047515 -185477063 - L2 LINE L2 -1 3312 2214 2617 128 5 21 chr3 42047543 42047972 -185476606 + MER57B LTR ERV1 3 424 -10 621 268 19 24 chr3 42047980 42048242 -185476336 + MER57B-int LTR ERV1 3 298 -7239 717 328 50 30 chr3 42050237 42050757 -185473821 + MER57B-int LTR ERV1 158 623 -4024 274 337 26 26 chr3 42050914 42051184 -185473394 + MER57B-int LTR ERV1 3400 3669 -4144 384 326 15 15 chr3 42051634 42051880 -185472698 + MER57B-int LTR ERV1 3784 5140 -1951 1973 267 12 51 chr3 42051976 42053345 -185471233 + MER57B-int LTR ERV1 2145 6169 -1368 2035 144 7 0 chr3 42054105 42054397 -185470181 - AluSx SINE Alu -18 294 1 539 292 16 25 chr3 42055191 42055432 -185469146 + MER57B-int LTR ERV1 6816 6993 -544 486 131 20 40 chr3 42055481 42055580 -185468998 + MER57B-int LTR ERV1 7441 7537 0 2555 134 16 32 chr3 42055580 42056019 -185468559 + MER57B LTR ERV1 1 432 -2 260 318 80 25 chr3 42056025 42056226 -185468352 - L2 LINE L2 -1120 2194 1983 216 0 0 0 chr3 42056235 42056259 -185468319 + (TG)n Simple_repeat Simple_repeat 1 24 0 187 267 0 22 chr3 42056429 42056474 -185468104 - L2 LINE L2 -13 3300 3257 * 243 254 0 17 chr3 42056444 42056503 -185468075 - MIR SINE MIR -21 241 184 1729 158 0 4 chr3 42056515 42056809 -185467769 + AluSx SINE Alu 26 318 0 1799 151 29 17 chr3 42056839 42057190 -185467388 + Tigger2a DNA MER2_type 8 362 -72 925 176 35 10 chr3 42057310 42057509 -185467069 + Tigger2 DNA MER2_type 2515 2718 0 219 227 53 67 chr3 42057509 42057584 -185466994 - MIR SINE MIR -105 157 84 473 244 52 0 chr3 42057595 42057710 -185466868 + Tigger3(Golem) DNA MER2_type 2 122 -2907 * 3585 114 62 48 chr3 42057696 42057984 -185466594 + Tigger3(Golem) DNA MER2_type 2285 2568 -461 1504 178 13 64 chr3 42057984 42058298 -185466280 + AluJo SINE Alu 1 298 -14 3585 114 62 48 chr3 42058298 42058734 -185465844 + Tigger3(Golem) DNA MER2_type 2568 3019 -10 261 0 0 0 chr3 42058885 42058914 -185465664 + (T)n Simple_repeat Simple_repeat 1 29 0 258 364 25 16 chr3 42059591 42059712 -185464866 + LTR16C LTR ERVL 127 248 -243 349 257 46 53 chr3 42059740 42059811 -185464767 + LTR16C LTR ERVL 341 411 -80 1941 176 12 47 chr3 42059811 42060215 -185464363 + MLT1B LTR MaLR 1 390 0 349 257 46 53 chr3 42060215 42060295 -185464283 + LTR16C LTR ERVL 411 491 0 400 330 132 9 chr3 42061009 42061221 -185463357 - MIR SINE MIR -14 248 11 2241 266 84 49 chr3 42061702 42062917 -185461661 - L1MDa LINE L1 -1371 5169 3913 491 194 54 0 chr3 42062925 42063054 -185461524 + L1MC2 LINE L1 5313 5448 -896 * 2472 180 90 40 chr3 42063052 42063684 -185460894 + L1MC2 LINE L1 5675 6338 -6 680 258 75 11 chr3 42063726 42064098 -185460480 - L1M4 LINE L1 -2614 3532 3137 * 1270 211 61 27 chr3 42064092 42064467 -185460111 - L1MA9 LINE L1 -1 6311 5924 1418 177 36 33 chr3 42064467 42064801 -185459777 + THE1C LTR MaLR 1 335 -40 2348 203 85 14 chr3 42064908 42066016 -185458562 - L1MA9 LINE L1 -399 5913 4727 706 147 88 78 chr3 42066122 42066326 -185458252 + L1MC2 LINE L1 6133 6338 -6 754 264 73 5 chr3 42066368 42066739 -185457839 - L1MDa LINE L1 -2614 3926 3531 * 4230 197 66 36 chr3 42066733 42067109 -185457469 - L1MA9 LINE L1 -1 6311 5948 1881 154 38 22 chr3 42067109 42067478 -185457100 + THE1C LTR MaLR 1 375 0 4230 197 66 36 chr3 42067478 42069127 -185455451 - L1MA9 LINE L1 -364 5948 4233 1835 218 11 11 chr3 42069140 42069594 -185454984 + L1 LINE L1 3257 3710 -2436 1191 200 62 0 chr3 42069595 42069855 -185454723 + L1 LINE L1 3817 4092 -2054 1187 284 109 34 chr3 42069850 42070382 -185454196 - L1M4 LINE L1 -5373 582 11 * 7410 242 97 18 chr3 42070398 42070508 -185454070 - L1MDa LINE L1 -2997 3543 3443 1040 171 37 14 chr3 42070508 42070725 -185453853 - L1PA16 LINE L1 -2 6164 5943 7410 242 97 18 chr3 42070725 42071564 -185453014 - L1MDa LINE L1 -3097 3443 2671 4210 130 6 9 chr3 42071564 42072219 -185452359 + MER39B LTR ERV1 1 653 0 7410 242 97 18 chr3 42072219 42074385 -185450193 - L1MDa LINE L1 -3869 2671 173 1227 107 0 0 chr3 42074392 42074551 -185450027 - AluSp SINE Alu -18 295 137 693 204 7 14 chr3 42074552 42074699 -185449879 - L1MDa LINE L1 -6379 161 16 500 239 67 8 chr3 42074747 42074881 -185449697 - MLT1H LTR MaLR -396 153 12 3962 132 53 78 chr3 42075479 42076273 -185448305 + LTR1 LTR ERV1 12 785 0 2000 117 154 9 chr3 42076310 42076660 -185447918 + L1PB1 LINE L1 5734 6134 -17 378 276 135 0 chr3 42076669 42076839 -185447739 + L1MC4a LINE L1 5957 6149 -1659 21 0 0 0 chr3 42076985 42077006 -185447572 + AT_rich Low_complexity Low_complexity 1 21 0 313 364 123 5 chr3 42077259 42077479 -185447099 - MIR SINE MIR -16 246 1 813 259 48 35 chr3 42078444 42078479 -185446099 - L1MEc LINE L1 -3739 3218 3185 1780 164 44 6 chr3 42078479 42078821 -185445757 + MER46B DNA MER2_type 5 234 -2 813 259 48 35 chr3 42078821 42079232 -185445346 - L1MEc LINE L1 -3772 3185 2807 202 414 23 23 chr3 42079640 42079860 -185444718 - L2 LINE L2 -462 2852 2633 473 263 29 108 chr3 42080844 42080969 -185443609 - MIR SINE MIR -39 223 124 1104 228 16 0 chr3 42080969 42081219 -185443359 - L1PB4 LINE L1 -3 6153 5900 473 263 29 108 chr3 42081219 42081333 -185443245 - MIR SINE MIR -138 124 3 2708 272 77 11 chr3 42082041 42082780 -185441798 + L1MDa LINE L1 11 798 -5742 2752 278 76 19 chr3 42082785 42083691 -185440887 - L1MEc LINE L1 -5900 959 2 1032 288 109 16 chr3 42083775 42084161 -185440417 - LTR16A1 LTR ERVL -34 423 2 197 248 248 29 chr3 42084453 42084558 -185440020 - L2 LINE L2 -2 3270 3143 2015 131 3 0 chr3 42085324 42085631 -185438947 + AluSx SINE Alu 3 310 0 327 336 40 20 chr3 42085962 42086111 -185438467 + MLT1H LTR MaLR 20 171 -378 831 179 106 11 chr3 42086114 42086293 -185438285 + MER34C LTR ERV1 4 199 -386 672 333 20 5 chr3 42086319 42086514 -185438064 - MER115 DNA AcHobo -345 348 151 1436 201 164 23 chr3 42087067 42087464 -185437114 - MLT1C LTR MaLR -12 455 3 1469 255 86 18 chr3 42087472 42087568 -185437010 - MLT1C-int LTR MaLR -6 1365 1277 2257 108 0 0 chr3 42087568 42087863 -185436715 - AluSx SINE Alu -17 295 1 1469 255 86 18 chr3 42087863 42088209 -185436369 - MLT1C-int LTR MaLR -94 1277 893 1370 213 68 95 chr3 42088195 42088636 -185435942 - MLT1C-int LTR MaLR -383 988 560 * 2612 192 26 87 chr3 42088636 42089463 -185435115 + MER4D LTR ERV1 1 896 -7 686 147 9 0 chr3 42089471 42089587 -185434991 - MLT1C-int LTR MaLR -808 563 447 2108 180 42 27 chr3 42089669 42089875 -185434703 - MLT1C LTR MaLR -2 465 264 2134 121 60 14 chr3 42089875 42090223 -185434355 - THE1B LTR MaLR 0 364 1 2108 180 42 27 chr3 42090223 42090465 -185434113 - MLT1C LTR MaLR -203 264 10 1392 297 150 48 chr3 42090645 42092327 -185432251 + HAL1 LINE L1 4 1857 -650 371 288 38 15 chr3 42093166 42093298 -185431280 + MIR SINE MIR 123 257 -5 525 258 133 21 chr3 42093593 42093833 -185430745 + MER5C DNA MER1_type 5 271 -53 321 307 127 37 chr3 42093921 42094110 -185430468 + L2 LINE L2 3104 3309 -4 378 0 0 0 chr3 42095533 42095575 -185429003 + (CA)n Simple_repeat Simple_repeat 1 42 0 365 306 104 14 chr3 42095944 42096168 -185428410 - MIR SINE MIR -11 251 2 255 308 84 0 chr3 42097197 42097304 -185427274 + MIR SINE MIR 76 191 -71 447 312 126 21 chr3 42098793 42099181 -185425397 - LTR33 LTR ERVL -59 462 34 297 194 119 0 chr3 42099653 42099720 -185424858 - L2 LINE L2 -19 3253 3179 1645 190 45 0 chr3 42100004 42100293 -185424285 + AluJb SINE Alu 3 304 -8 188 390 0 0 chr3 42100986 42101045 -185423533 - L3 LINE CR1 -1 1576 1518 556 237 86 38 chr3 42101085 42101271 -185423307 + MER3 DNA MER1_type 12 206 -3 229 273 0 0 chr3 42101231 42101286 -185423292 - MER3 DNA MER1_type -119 90 36 * 182 105 26 0 chr3 42101598 42101636 -185422942 + (TTTAA)n Simple_repeat Simple_repeat 3 41 0 24 0 0 0 chr3 42102171 42102195 -185422383 + AT_rich Low_complexity Low_complexity 1 24 0 940 216 74 66 chr3 42103759 42104194 -185420384 - MLT1A2 LTR MaLR 0 374 14 315 0 0 0 chr3 42105121 42105156 -185419422 + (TTA)n Simple_repeat Simple_repeat 2 36 0 2806 3 0 0 chr3 42105158 42105459 -185419119 - AluYb8 SINE Alu -17 301 1 23 0 0 0 chr3 42105459 42105482 -185419096 + AT_rich Low_complexity Low_complexity 1 23 0 213 406 58 0 chr3 42105682 42105820 -185418758 + MIR3 SINE MIR 36 181 -27 340 279 12 0 chr3 42106404 42106490 -185418088 + MER96 DNA MER1_type? 79 165 -10 2297 213 48 8 chr3 42106578 42107114 -185417464 - MER74A LTR ERVL 0 558 1 188 206 0 0 chr3 42107221 42107255 -185417323 + L2 LINE L2 3258 3291 -22 180 111 0 0 chr3 42108761 42108788 -185415790 + (A)n Simple_repeat Simple_repeat 1 27 0 368 338 75 10 chr3 42108802 42109003 -185415575 - MIR SINE MIR 0 262 49 239 292 119 18 chr3 42109034 42109202 -185415376 - HAL1 LINE L1 -8 2499 2315 1193 226 4 0 chr3 42109497 42109758 -185414820 + L1ME2 LINE L1 5720 5981 -183 6620 60 26 1 chr3 42109760 42111335 -185413243 + L1PA5 LINE L1 4564 6152 -2 321 270 22 0 chr3 42111330 42111419 -185413159 - MLT2C1 LTR ERVL -305 92 2 9738 231 41 10 chr3 42111420 42113771 -185410807 - ERVL LTR ERVL -1 5653 3263 1694 238 131 33 chr3 42113766 42114195 -185410383 - ERVL LTR ERVL -2704 3060 2564 * 2814 0 0 0 chr3 42114195 42114495 -185410083 + AluYa8 SINE Alu 1 300 -10 1694 238 131 33 chr3 42114495 42114615 -185409963 - ERVL LTR ERVL -3200 2564 2457 775 203 0 0 chr3 42114733 42114866 -185409712 - ERVL LTR ERVL -3622 2142 2010 21 71 0 0 chr3 42114870 42114912 -185409666 + AT_rich Low_complexity Low_complexity 1 42 0 698 150 0 36 chr3 42115154 42115294 -185409284 + L1PB3 LINE L1 6019 6153 -1 22 0 0 0 chr3 42116152 42116174 -185408404 + AT_rich Low_complexity Low_complexity 1 22 0 203 138 0 0 chr3 42116182 42116211 -185408367 + (TTCC)n Simple_repeat Simple_repeat 3 31 0 1818 164 0 11 chr3 42116929 42117247 -185407331 - AluJb SINE Alu 0 315 1 5889 152 47 25 chr3 42117277 42118439 -185406139 - Tigger3b DNA MER2_type -13 1218 31 1065 282 72 11 chr3 42118937 42119284 -185405294 + MLT1A2 LTR MaLR 1 368 -6 1933 210 67 6 chr3 42119291 42119841 -185404737 + MLT1A2-int LTR MaLR 20 739 -632 280 226 16 0 chr3 42119950 42120012 -185404566 + MLT1A2-int LTR MaLR 669 731 -1004 1661 232 36 8 chr3 42120210 42120602 -185403976 + MLT1A2-int LTR MaLR 1314 1716 -19 324 293 30 85 chr3 42121022 42121186 -185403392 - HAL1 LINE L1 -688 1819 1665 3493 216 53 10 chr3 42121189 42122108 -185402470 - L1MB1 LINE L1 -853 5293 4335 4023 181 65 2 chr3 42122109 42122912 -185401666 + L1MB1 LINE L1 5315 6167 -1 782 230 60 105 chr3 42122970 42123418 -185401160 - HAL1 LINE L1 -869 1638 1211 348 169 0 0 chr3 42123448 42123525 -185401053 + CT-rich Low_complexity Low_complexity 2 78 0 534 318 18 39 chr3 42123778 42124061 -185400517 - HAL1 LINE L1 -1600 907 631 293 227 13 13 chr3 42124652 42124727 -185399851 - MIR SINE MIR -111 151 77 221 269 202 25 chr3 42125969 42126088 -185398490 + MIR SINE MIR 90 229 -33 315 0 0 0 chr3 42126250 42126285 -185398293 + (TG)n Simple_repeat Simple_repeat 2 36 0 305 230 139 61 chr3 42126705 42126870 -185397708 - MIR SINE MIR -77 185 8 268 269 10 29 chr3 42127222 42127326 -185397252 + MLT1A2-int LTR MaLR 1622 1723 -12 288 242 150 33 chr3 42127348 42127468 -185397110 + MLT1A2 LTR MaLR 7 140 -250 2092 115 7 3 chr3 42127552 42127847 -185396731 + AluSx SINE Alu 11 306 -6 2071 115 3 7 chr3 42129422 42129709 -185394869 - AluSx SINE Alu -26 286 1 778 234 67 60 chr3 42129974 42130256 -185394322 + MER5C DNA MER1_type 41 324 0 1392 30 0 12 chr3 42231043 42231210 -185293368 - L1PA3 LINE L1 0 6155 5991 2222 169 57 7 chr3 42231211 42231614 -185292964 + MER82 DNA MER2_type 151 573 -80 2102 121 7 7 chr3 42231614 42231911 -185292667 - AluSq SINE Alu -15 298 2 937 135 0 0 chr3 42233422 42233555 -185291023 - AluJb SINE Alu -22 290 158 694 169 7 37 chr3 42234053 42234189 -185290389 - AluJo SINE Alu -176 136 5 766 258 157 23 chr3 42234675 42234981 -185289597 - MER7A DNA MER2_type -1 345 1 3593 148 113 28 chr3 42236148 42237018 -185287560 + pTR5 LTR ERV1 741 2020 -418 265 245 61 0 chr3 42237018 42237116 -185287462 + LTR30 LTR ERV1 539 642 -80 2376 84 12 3 chr3 42237117 42237440 -185287138 + pTR5 LTR ERV1 67 392 -2046 1715 191 30 6 chr3 42237440 42237776 -185286802 - MLT1A1 LTR MaLR -21 344 1 230 222 0 19 chr3 42238082 42238136 -185286442 - L2 LINE L2 -341 2972 2920 2452 86 0 3 chr3 42238713 42239026 -185285552 - AluSx SINE Alu 0 312 1 285 216 68 23 chr3 42239042 42239130 -185285448 - LTR33A LTR ERVL -6 517 426 * 720 226 75 51 chr3 42239127 42239444 -185285134 - LTR50 LTR ERVL -145 650 402 207 0 0 0 chr3 42240196 42240219 -185284359 + (TG)n Simple_repeat Simple_repeat 2 24 0 2018 125 14 3 chr3 42240224 42240519 -185284059 - AluSx SINE Alu -14 298 1 945 100 0 33 chr3 42240519 42240669 -185283909 - L1MA6 LINE L1 -475 5825 5681 1356 130 9 31 chr3 42240826 42241049 -185283529 - AluSg/x SINE Alu -20 292 75 354 322 25 8 chr3 42241100 42241221 -185283357 - MIR3 SINE MIR -29 179 57 22 0 0 0 chr3 42242668 42242690 -185281888 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr3 42243148 42243181 -185281397 + AT_rich Low_complexity Low_complexity 1 33 0 2149 134 0 7 chr3 42243779 42244085 -185280493 + AluSx SINE Alu 1 304 -8 235 286 164 37 chr3 42244898 42245087 -185279491 + L2 LINE L2 3004 3216 -97 724 157 0 0 chr3 42245176 42245284 -185279294 + FLAM_C SINE Alu 2 109 -34 875 130 7 7 chr3 42245414 42245552 -185279026 + AluSg/x SINE Alu 161 298 -12 1960 139 3 20 chr3 42245561 42245864 -185278714 + AluSx SINE Alu 1 298 -14 1241 101 19 43 chr3 42246585 42246792 -185277786 + AluSg/x SINE Alu 95 296 -16 773 273 96 18 chr3 42246807 42247268 -185277310 - L1ME LINE L1 -578 5592 5094 2289 101 3 3 chr3 42247287 42247585 -185276993 + AluSg SINE Alu 1 298 -12 1918 120 0 11 chr3 42247598 42247872 -185276706 + AluSg SINE Alu 15 285 -25 419 256 141 41 chr3 42247985 42248065 -185276513 + L1MC4a LINE L1 5727 5798 -2010 249 33 0 0 chr3 42248065 42248095 -185276483 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 2163 126 3 3 chr3 42248097 42248399 -185276179 + AluSx SINE Alu 1 302 -10 419 256 141 41 chr3 42248399 42248585 -185275993 + L1MC4a LINE L1 5798 6023 -1785 1730 127 36 42 chr3 42248610 42248917 -185275661 + AluJo SINE Alu 1 305 -7 653 316 67 78 chr3 42249368 42250217 -185274361 + L2 LINE L2 2131 2970 -344 1731 199 10 33 chr3 42250541 42250932 -185273646 - L1M4c LINE L1 -4460 1924 1543 2318 103 3 3 chr3 42250944 42251256 -185273322 - AluSx SINE Alu 0 312 1 216 0 0 0 chr3 42251257 42251281 -185273297 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2005 132 3 3 chr3 42251283 42251570 -185273008 - AluSx SINE Alu -25 287 1 273 100 43 86 chr3 42251570 42251640 -185272938 - L1M4c LINE L1 -4825 1559 1493 438 284 29 14 chr3 42251827 42251989 -185272589 + MIR SINE MIR 3 169 -39 1239 140 40 80 chr3 42254054 42254354 -185270224 + AluSx SINE Alu 1 288 -24 880 200 0 49 chr3 42254423 42254628 -185269950 + MER3 DNA MER1_type 12 206 -3 21 0 0 0 chr3 42254999 42255020 -185269558 + AT_rich Low_complexity Low_complexity 1 21 0 309 234 152 28 chr3 42255123 42255268 -185269310 - MIR SINE MIR -52 210 48 312 289 35 0 chr3 42255923 42256037 -185268541 + L2 LINE L2 2740 2857 -457 195 284 25 25 chr3 42256501 42256582 -185267996 + MIR SINE MIR 1 81 -181 1311 169 46 39 chr3 42256817 42257101 -185267477 - AluJo SINE Alu -26 286 1 1888 124 36 33 chr3 42257224 42257530 -185267048 - AluJb SINE Alu -5 307 1 2434 101 0 0 chr3 42257534 42257840 -185266738 - AluSp SINE Alu -7 306 1 303 279 351 3 chr3 42258225 42258661 -185265917 + L2 LINE L2 2713 3307 -6 252 201 114 114 chr3 42258953 42259217 -185265361 - L1MC4 LINE L1 -1 8041 7778 4082 123 134 38 chr3 42259456 42260774 -185263804 + pTR5 LTR ERV1 743 2360 -78 815 176 22 50 chr3 42260994 42261176 -185263402 - MSTD LTR MaLR -108 288 112 267 213 53 0 chr3 42261190 42261265 -185263313 - L1MDa LINE L1 -4964 1576 1498 523 152 30 0 chr3 42261270 42261369 -185263209 - MSTD LTR MaLR -294 102 1 2461 78 0 0 chr3 42261410 42261717 -185262861 + AluY SINE Alu 1 307 -4 1339 157 11 15 chr3 42261758 42262020 -185262558 - L1MDa LINE L1 -4505 2035 1775 1826 157 14 7 chr3 42262429 42262723 -185261855 - AluJb SINE Alu -16 296 1 27 29 0 0 chr3 42263359 42263393 -185261185 + AT_rich Low_complexity Low_complexity 1 34 0 21 57 0 0 chr3 42264068 42264103 -185260475 + AT_rich Low_complexity Low_complexity 1 35 0 319 377 0 0 chr3 42264512 42264573 -185260005 + C-rich Low_complexity Low_complexity 1 61 0 257 288 25 75 chr3 42264694 42264816 -185259762 - L1ME LINE L1 -565 5556 5442 2532 57 3 0 chr3 42264816 42265117 -185259461 + AluY SINE Alu 1 302 -9 257 288 25 75 chr3 42265117 42265154 -185259424 - L1ME LINE L1 -679 5442 5405 373 299 143 31 chr3 42265467 42265691 -185258887 + MIR SINE MIR 14 262 0 359 339 163 25 chr3 42265685 42265930 -185258648 + L2 LINE L2 2993 3271 -1 * 2055 125 11 3 chr3 42266199 42266486 -185258092 + AluSx SINE Alu 6 294 -18 640 219 0 0 chr3 42266529 42266648 -185257930 + FLAM_A SINE Alu 5 123 -10 2009 120 11 3 chr3 42267192 42267475 -185257103 - AluSx SINE Alu -27 285 1 425 186 39 10 chr3 42267476 42267578 -185257000 + Charlie1 DNA MER1_type 2638 2742 -19 1419 87 5 15 chr3 42267964 42268160 -185256418 + AluSg/x SINE Alu 109 302 -10 2304 110 0 3 chr3 42268340 42268641 -185255937 - AluSx SINE Alu -12 300 1 23 0 0 0 chr3 42269076 42269099 -185255479 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr3 42270261 42270298 -185254280 + AT_rich Low_complexity Low_complexity 1 37 0 1511 138 11 35 chr3 42271616 42271899 -185252679 + LTR22A LTR ERVK 183 458 0 2179 113 7 0 chr3 42272075 42272368 -185252210 - AluSp SINE Alu -18 295 1 301 203 13 51 chr3 42272746 42272825 -185251753 + Charlie8 DNA MER1_type 1698 1773 -644 262 94 245 0 chr3 42272837 42272865 -185251713 - MER41B LTR ERV1 -88 547 527 2244 110 10 0 chr3 42272865 42273173 -185251405 + AluSq SINE Alu 1 311 -2 262 94 245 0 chr3 42273173 42273197 -185251381 - MER41B LTR ERV1 -108 527 482 344 269 147 51 chr3 42273198 42273726 -185250852 + Charlie8 DNA MER1_type 1767 2414 -3 401 203 0 0 chr3 42373778 42373852 -185150726 - L1PA16 LINE L1 -265 5901 5828 5198 134 21 14 chr3 42373855 42374692 -185149886 - Tigger1 DNA MER2_type -910 1508 666 5330 108 99 116 chr3 42374695 42376285 -185148293 - pTR5 LTR ERV1 0 2438 748 339 113 0 48 chr3 42376285 42376347 -185148231 - Tigger1 DNA MER2_type -1744 674 616 823 130 48 0 chr3 42376352 42376498 -185148080 - L1MA4 LINE L1 -6 6294 6142 604 173 0 16 chr3 42376498 42376625 -185147953 - L1MA4A LINE L1 -202 6101 5977 2835 201 62 7 chr3 42376626 42377218 -185147360 - Tigger1 DNA MER2_type -1777 641 17 191 206 196 11 chr3 42377473 42377565 -185147013 + MIR SINE MIR 148 256 -6 187 250 118 0 chr3 42378084 42378152 -185146426 + MIR3 SINE MIR 87 162 -46 23 33 0 0 chr3 42378250 42378280 -185146298 + AT_rich Low_complexity Low_complexity 1 30 0 448 268 127 6 chr3 42379405 42379562 -185145016 + LTR50 LTR ERVL 1 176 -619 266 290 51 68 chr3 42379883 42380059 -185144519 - HAL1 LINE L1 -2333 174 2 475 294 27 7 chr3 42380299 42380445 -185144133 + MIR SINE MIR 53 201 -61 1339 211 53 19 chr3 42380795 42381329 -185143249 + MLT1E2 LTR MaLR 8 626 0 299 281 45 0 chr3 42381777 42381866 -185142712 + MIR SINE MIR 111 203 -59 1125 169 30 5 chr3 42383686 42383887 -185140691 + L1PA16 LINE L1 5937 6142 -24 5614 133 29 15 chr3 42383897 42384806 -185139772 + Tigger1 DNA MER2_type 1498 2418 0 232 208 75 0 chr3 42385709 42385762 -185138816 - LTR33A LTR ERVL 0 523 467 413 284 91 11 chr3 42386716 42386892 -185137686 - MIR SINE MIR 0 262 73 207 170 0 0 chr3 42386935 42386982 -185137596 + (CA)n Simple_repeat Simple_repeat 2 48 0 24 32 0 0 chr3 42387327 42387358 -185137220 + AT_rich Low_complexity Low_complexity 1 31 0 31 82 0 0 chr3 42388233 42388306 -185136272 + AT_rich Low_complexity Low_complexity 1 73 0 23 54 0 0 chr3 42388462 42388499 -185136079 + AT_rich Low_complexity Low_complexity 1 37 0 24 0 0 0 chr3 42388625 42388649 -185135929 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 42388949 42388977 -185135601 + AT_rich Low_complexity Low_complexity 1 28 0 521 331 43 30 chr3 42389017 42389389 -185135189 - L1MC/D LINE L1 -2177 5631 5255 2496 164 58 91 chr3 42389534 42390224 -185134354 - L1MC2 LINE L1 0 6344 5678 291 345 36 49 chr3 42390276 42390499 -185134079 + L2 LINE L2 2629 2848 -466 270 279 52 32 chr3 42390499 42390653 -185133925 + L1ME3A LINE L1 5207 5363 -783 1289 121 10 35 chr3 42390697 42390895 -185133683 - AluSq SINE Alu -22 291 99 438 278 28 7 chr3 42390945 42391089 -185133489 + L1ME3A LINE L1 5451 5597 -569 223 239 30 0 chr3 42391123 42391190 -185133388 + (TA)n Simple_repeat Simple_repeat 1 69 0 906 258 80 19 chr3 42391222 42391583 -185132995 + L1ME3A LINE L1 5788 6170 0 22 0 0 0 chr3 42393159 42393181 -185131397 + AT_rich Low_complexity Low_complexity 1 22 0 1082 156 14 46 chr3 42393355 42393573 -185131005 - AluSg/x SINE Alu -17 295 85 334 39 0 20 chr3 42393573 42393624 -185130954 - AluY SINE Alu -52 249 200 1168 81 0 0 chr3 42393624 42393773 -185130805 - AluSq/x SINE Alu -164 149 1 323 233 144 62 chr3 42394068 42394214 -185130364 - MLT1H LTR MaLR -9 540 383 191 364 0 18 chr3 42394643 42394698 -185129880 + L2 LINE L2 3127 3180 -92 1240 250 38 31 chr3 42394845 42395356 -185129222 + MER77 LTR ERV1 55 601 -4 320 332 113 55 chr3 42395542 42395933 -185128645 - L2 LINE L2 -55 3258 2789 745 253 22 6 chr3 42395933 42396115 -185128463 + MER5A DNA MER1_type 2 186 -3 320 332 113 55 chr3 42396115 42396322 -185128256 - L2 LINE L2 -524 2789 2595 210 296 98 23 chr3 42398014 42398146 -185126432 - L2 LINE L2 0 3313 3172 4448 194 13 33 chr3 42398195 42398427 -185126151 - L1 LINE L1 -1280 4866 4631 4783 65 5 5 chr3 42398427 42399057 -185125521 - L1PA5 LINE L1 -8 6146 5517 4448 194 13 33 chr3 42399057 42399842 -185124736 - L1 LINE L1 -1515 4631 3870 6627 75 9 0 chr3 42399851 42401174 -185123404 - L1PA7 LINE L1 0 6154 4824 220 326 116 43 chr3 42401525 42401663 -185122915 - MIR SINE MIR -7 255 108 231 349 34 34 chr3 42404509 42404655 -185119923 + L2 LINE L2 2553 2698 -616 243 349 60 18 chr3 42405244 42405410 -185119168 + LTR16C LTR ERVL 305 477 -14 257 333 60 47 chr3 42405531 42405681 -185118897 + L2 LINE L2 3116 3267 -5 3894 156 48 10 chr3 42408540 42409254 -185115324 + L1MC2 LINE L1 5593 6333 -11 914 112 8 0 chr3 42409440 42409599 -185114979 + L1PA8 LINE L1 6014 6173 0 216 0 0 0 chr3 42411032 42411056 -185113522 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 25 65 0 0 chr3 42411786 42411832 -185112746 + AT_rich Low_complexity Low_complexity 1 46 0 593 345 47 13 chr3 42411937 42412172 -185112406 + MIR SINE MIR 19 261 -1 239 0 0 31 chr3 42412884 42412916 -185111662 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 456 304 121 38 chr3 42413291 42413630 -185110948 + MLT1I LTR MaLR 42 408 -1 2483 253 104 56 chr3 42415015 42415910 -185108668 + L1MDa LINE L1 27 964 -5576 439 209 43 0 chr3 42415917 42416032 -185108546 + L1MDa LINE L1 1750 1869 -4671 334 155 35 0 chr3 42416031 42416089 -185108489 - L1MA9 LINE L1 -230 6082 6023 * 645 229 0 0 chr3 42416090 42416230 -185108348 + L1MA9 LINE L1 6152 6291 -21 512 175 6 17 chr3 42416220 42416340 -185108238 + L1MCa LINE L1 1577 1837 -4589 * 1239 195 78 33 chr3 42416336 42416482 -185108096 + L1MD1 LINE L1 5894 6032 -210 2007 131 0 3 chr3 42416482 42416773 -185107805 + AluSg SINE Alu 1 290 -20 1239 195 78 33 chr3 42416773 42416960 -185107618 + L1MD1 LINE L1 6032 6242 0 367 323 55 76 chr3 42417238 42417566 -185107012 - L3 LINE CR1 -264 1313 993 721 48 39 10 chr3 42417597 42417701 -185106877 - AluYa5/8 SINE Alu 0 310 204 353 215 16 16 chr3 42417904 42418025 -185106553 + (TA)n Simple_repeat Simple_repeat 2 122 0 210 133 83 0 chr3 42418874 42418934 -185105644 + (TA)n Simple_repeat Simple_repeat 2 66 0 225 253 78 102 chr3 42420350 42420516 -185104062 - MER103 DNA DNA -1 165 4 3112 167 41 5 chr3 42421004 42421584 -185102994 - LTR26 LTR ERV1 -2 601 1 189 0 0 0 chr3 42421946 42421967 -185102611 + (GA)n Simple_repeat Simple_repeat 2 22 0 2064 128 3 25 chr3 42422160 42422479 -185102099 + AluSx SINE Alu 1 312 0 38 0 0 0 chr3 42422647 42422685 -185101893 + AT_rich Low_complexity Low_complexity 1 38 0 305 273 73 47 chr3 42422725 42422875 -185101703 + HAL1b LINE L1 754 907 -441 216 0 0 0 chr3 42423317 42423341 -185101237 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 342 45 0 0 chr3 42423733 42423777 -185100801 + (CA)n Simple_repeat Simple_repeat 1 44 0 573 356 35 58 chr3 42424021 42424453 -185100125 + L2 LINE L2 2423 2844 -470 21 0 0 0 chr3 42425046 42425067 -185099511 + AT_rich Low_complexity Low_complexity 1 21 0 615 252 18 66 chr3 42425435 42425661 -185098917 + L2 LINE L2 3097 3311 -2 23 33 0 0 chr3 42425661 42425691 -185098887 + AT_rich Low_complexity Low_complexity 1 30 0 2938 6 0 0 chr3 42425753 42426070 -185098508 - AluYb8 SINE Alu -1 317 1 211 133 67 0 chr3 42427009 42427054 -185097524 + T-rich Low_complexity Low_complexity 3 50 0 1526 225 18 63 chr3 42427072 42427468 -185097110 - MLT1B LTR MaLR -10 380 3 269 385 68 0 chr3 42427479 42427671 -185096907 + L2 LINE L2 1005 1209 -2105 605 327 151 22 chr3 42427945 42428449 -185096129 - L2 LINE L2 -8 3305 2748 2091 106 0 0 chr3 42429141 42429455 -185095123 + AluSx SINE Alu 1 314 0 266 184 0 0 chr3 42429492 42429541 -185095037 + AluSp SINE Alu 121 169 -134 22 0 0 0 chr3 42429837 42429859 -185094719 + AT_rich Low_complexity Low_complexity 1 22 0 246 32 0 0 chr3 42429891 42429922 -185094656 + (TTTA)n Simple_repeat Simple_repeat 3 33 0 949 59 0 0 chr3 42429922 42430041 -185094537 - L1PA3 LINE L1 -13 6142 6024 792 80 9 0 chr3 42430041 42430153 -185094425 - L1P LINE L1 -1339 4807 4695 310 274 44 52 chr3 42430683 42430818 -185093760 - L2 LINE L2 0 3313 3180 357 290 136 15 chr3 42430917 42431372 -185093206 + L1MDa LINE L1 1913 2422 -4118 219 424 12 0 chr3 42431447 42431532 -185093046 - L2 LINE L2 -48 3224 3139 222 150 0 0 chr3 42431628 42431668 -185092910 + (CA)n Simple_repeat Simple_repeat 2 41 0 204 227 0 0 chr3 42431787 42431831 -185092747 + (CATATA)n Simple_repeat Simple_repeat 3 46 0 7065 48 16 0 chr3 42431914 42432916 -185091662 - L1PA3 LINE L1 -2 6153 5146 182 203 109 31 chr3 42433352 42433416 -185091162 - L3 LINE CR1 -220 1357 1289 750 138 113 59 chr3 42433636 42433839 -185090739 + AluSg/x SINE Alu 94 307 -3 2257 88 3 3 chr3 42433964 42434258 -185090320 - AluSc SINE Alu -15 294 1 21 36 0 0 chr3 42434387 42434415 -185090163 + AT_rich Low_complexity Low_complexity 1 28 0 396 335 75 69 chr3 42436555 42437105 -185087473 + HAL1 LINE L1 826 1378 -1129 22 80 0 0 chr3 42437392 42437442 -185087136 + AT_rich Low_complexity Low_complexity 1 50 0 615 72 0 0 chr3 42437998 42438081 -185086497 - AluS SINE Alu -230 83 1 5040 168 18 31 chr3 42438172 42438464 -185086114 - L1MA4 LINE L1 -11 6289 5995 2864 7 0 0 chr3 42438464 42438774 -185085804 - AluYa5 SINE Alu -1 310 1 5040 168 18 31 chr3 42438774 42439206 -185085372 - L1MA4 LINE L1 -305 5995 5559 2476 54 3 0 chr3 42439206 42439502 -185085076 - AluY SINE Alu -14 297 1 5040 168 18 31 chr3 42439502 42439978 -185084600 - L1MA4 LINE L1 -741 5559 5100 651 165 24 0 chr3 42439991 42440118 -185084460 - L1MA4 LINE L1 -1135 5011 4882 2437 205 44 4 chr3 42440119 42440621 -185083957 + L1 LINE L1 3357 3878 -2268 3302 142 5 40 chr3 42440624 42441243 -185083335 + L1PB4 LINE L1 5557 6153 -3 1778 107 95 0 chr3 42441274 42441620 -185082958 + L1P LINE L1 4441 4819 -1327 188 319 149 0 chr3 42443007 42443148 -185081430 - MIR SINE MIR -51 211 50 227 326 118 7 chr3 42443215 42443350 -185081228 + MIR SINE MIR 113 262 0 1663 167 31 3 chr3 42443963 42444250 -185080328 - AluSx SINE Alu -17 295 1 205 216 0 39 chr3 42444512 42444563 -185080015 + (TCCA)n Simple_repeat Simple_repeat 1 49 0 249 146 0 0 chr3 42444842 42444889 -185079689 + MIR SINE MIR 64 111 -97 304 232 30 77 chr3 42445272 42445440 -185079138 - LTR16A1 LTR ERVL -1 456 297 458 192 0 0 chr3 42445443 42445521 -185079057 + MER5A DNA MER1_type 1 78 -111 369 256 26 8 chr3 42445669 42445786 -185078792 - LTR16A1 LTR ERVL -330 127 9 604 293 50 0 chr3 42445934 42446156 -185078422 - L1MB7 LINE L1 -19 6165 5933 1469 104 0 5 chr3 42446156 42446349 -185078229 - AluY SINE Alu -20 291 100 240 111 0 0 chr3 42446697 42446733 -185077845 + (TG)n Simple_repeat Simple_repeat 1 36 0 422 331 41 0 chr3 42446805 42446974 -185077604 + MLT1J LTR MaLR 2 177 -334 284 264 116 8 chr3 42447870 42447999 -185076579 - MER104 DNA Tc2 -3 177 35 2507 67 0 0 chr3 42448086 42448386 -185076192 - AluY SINE Alu -11 300 1 1063 299 81 28 chr3 42448529 42449388 -185075190 + L2 LINE L2 2357 3313 0 59 74 0 0 chr3 42450292 42450414 -185074164 + AT_rich Low_complexity Low_complexity 1 122 0 611 246 49 44 chr3 42450453 42450543 -185074035 + MER3 DNA MER1_type 6 94 -115 1876 164 27 21 chr3 42450543 42450878 -185073700 + MER1B DNA MER1_type 1 337 0 611 246 49 44 chr3 42450878 42450990 -185073588 + MER3 DNA MER1_type 94 209 0 231 253 58 58 chr3 42451546 42451633 -185072945 + L2 LINE L2 3185 3271 -1 2265 105 0 13 chr3 42452010 42452323 -185072255 - AluSc SINE Alu 0 309 1 30 27 0 0 chr3 42452767 42452804 -185071774 + AT_rich Low_complexity Low_complexity 1 37 0 183 318 95 8 chr3 42452869 42452995 -185071583 - MIR SINE MIR -1 261 125 354 274 0 0 chr3 42453670 42453816 -185070762 + (TA)n Simple_repeat Simple_repeat 1 146 0 2876 170 23 0 chr3 42453829 42454395 -185070183 + L1 LINE L1 4226 4804 -1342 10088 172 30 41 chr3 42454504 42455474 -185069104 - Tigger2 DNA MER2_type -689 2029 1050 2107 115 0 10 chr3 42455474 42455778 -185068800 - AluSc SINE Alu -8 301 1 10088 172 30 41 chr3 42455778 42456859 -185067719 - Tigger2 DNA MER2_type -1668 1050 1 221 139 23 0 chr3 42456859 42456902 -185067676 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 316 355 26 7 chr3 42457189 42457341 -185067237 + MIR SINE MIR 96 250 -12 5156 183 20 35 chr3 42458242 42459277 -185065301 - ERVL LTR ERVL -578 5186 4167 1053 215 0 5 chr3 42459265 42459465 -185065113 - ERVL LTR ERVL -3335 2429 2231 * 571 234 26 7 chr3 42459465 42459619 -185064959 - MLT2D LTR ERVL -257 157 1 2235 101 0 3 chr3 42459733 42460039 -185064539 - AluSc SINE Alu -4 305 1 10924 28 2 6 chr3 42460054 42462120 -185062458 + L1PA3 LINE L1 4093 6155 0 1823 152 0 4 chr3 42462245 42462514 -185062064 - AluSx SINE Alu -44 268 1 751 240 21 16 chr3 42462514 42462801 -185061777 + MER90 LTR ERV1 288 614 0 360 224 18 127 chr3 42464263 42464415 -185060163 + MIR SINE MIR 43 177 -62 24 0 0 0 chr3 42464648 42464672 -185059906 + AT_rich Low_complexity Low_complexity 1 24 0 209 281 0 0 chr3 42464714 42464771 -185059807 + (TATATG)n Simple_repeat Simple_repeat 3 59 0 221 0 35 0 chr3 42464822 42464851 -185059727 + (TA)n Simple_repeat Simple_repeat 1 30 0 10221 207 52 16 chr3 42464978 42469811 -185054767 + L1PB1 LINE L1 6 5273 -1589 3397 173 31 114 chr3 42469929 42471021 -185053557 - L1 LINE L1 -863 5283 4283 21 57 0 0 chr3 42471515 42471550 -185053028 + AT_rich Low_complexity Low_complexity 1 35 0 269 273 23 11 chr3 42471748 42471836 -185052742 + L1M4 LINE L1 4075 4163 -1983 5440 158 19 30 chr3 42474251 42475397 -185049181 + L1PB1 LINE L1 5355 6479 -388 398 20 20 0 chr3 42475397 42475448 -185049130 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 5440 158 19 30 chr3 42475448 42475832 -185048746 + L1PB1 LINE L1 6479 6866 -1 2156 130 0 0 chr3 42475844 42476137 -185048441 - AluSx SINE Alu -19 293 1 262 178 0 0 chr3 42476714 42476759 -185047819 - L1M1 LINE L1 -470 5835 5791 2793 142 11 0 chr3 42476770 42477236 -185047342 - L1M1 LINE L1 -490 5815 5345 2013 118 11 0 chr3 42477357 42477629 -185046949 + AluSx SINE Alu 27 301 -11 7355 36 11 5 chr3 42478118 42479232 -185045346 - L1PA4 LINE L1 -7 6148 5033 492 103 13 0 chr3 42479232 42479316 -185045262 + L1PA4 LINE L1 4956 5040 -1106 602 248 120 40 chr3 42480061 42480461 -185044117 + L1M4 LINE L1 4318 4749 -1397 37 39 0 0 chr3 42480605 42480656 -185043922 + AT_rich Low_complexity Low_complexity 1 51 0 34787 48 30 2 chr3 42480709 42485147 -185039431 + L1P LINE L1 3 4565 -1581 224 306 32 0 chr3 42485838 42485900 -185038678 - L2 LINE L2 -559 2755 2692 479 258 44 31 chr3 42486935 42487094 -185037484 - MIR SINE MIR -2 260 100 437 145 59 7 chr3 42487094 42487246 -185037332 + (TA)n Simple_repeat Simple_repeat 1 160 0 404 279 8 41 chr3 42487281 42487403 -185037175 - FLAM_A SINE Alu -15 118 1 319 93 37 0 chr3 42487405 42487459 -185037119 + L1MA5A LINE L1 6242 6297 0 269 227 159 11 chr3 42487493 42487581 -185036997 - MIR SINE MIR -160 102 2 302 338 6 45 chr3 42487976 42488133 -185036445 - MIR SINE MIR -60 202 52 219 305 43 21 chr3 42489549 42489690 -185034888 - MIR SINE MIR 0 262 119 2111 133 3 0 chr3 42489711 42490019 -185034559 + AluSx SINE Alu 1 309 -3 21 36 0 0 chr3 42491190 42491218 -185033360 + AT_rich Low_complexity Low_complexity 1 28 0 201 94 0 0 chr3 42491555 42491587 -185032991 + (GA)n Simple_repeat Simple_repeat 1 32 0 1079 194 30 0 chr3 42492350 42492551 -185032027 + MSTB LTR MaLR 220 426 0 1980 145 96 0 chr3 42492564 42492896 -185031682 - THE1B LTR MaLR 0 364 1 10827 109 9 16 chr3 42492896 42494081 -185030497 - THE1B-int LTR MaLR 0 1580 407 1680 112 4 4 chr3 42494081 42494322 -185030256 - AluSg/x SINE Alu 0 312 72 10827 109 9 16 chr3 42494322 42494726 -185029852 - THE1B-int LTR MaLR -1173 407 2 2179 128 73 14 chr3 42494727 42495071 -185029507 - THE1B LTR MaLR 0 364 1 379 261 0 0 chr3 42495138 42495226 -185029352 + MER76 LTR ERV 317 404 -284 737 203 12 0 chr3 42495791 42495954 -185028624 - L1MB5 LINE L1 -8 6166 6002 2871 195 26 20 chr3 42495962 42496739 -185027839 - L1MB5 LINE L1 -280 5894 5115 232 315 69 31 chr3 42497318 42497448 -185027130 + MIR SINE MIR 2 136 -126 217 83 62 21 chr3 42497538 42497571 -185027007 + T-rich Low_complexity Low_complexity 5 42 -12 7412 32 4 0 chr3 42497571 42498851 -185025727 - L1PA3 LINE L1 -3 6152 4869 217 83 62 21 chr3 42498851 42498865 -185025713 + T-rich Low_complexity Low_complexity 42 54 0 21 0 0 0 chr3 42499440 42499461 -185025117 + AT_rich Low_complexity Low_complexity 1 21 0 2208 97 6 10 chr3 42500198 42500509 -185024069 + AluY SINE Alu 1 310 -1 207 0 0 0 chr3 42501204 42501227 -185023351 + (A)n Simple_repeat Simple_repeat 1 23 0 1254 196 45 54 chr3 42501823 42502154 -185022424 - L1MB7 LINE L1 -102 6082 5755 1148 261 83 23 chr3 42502172 42502248 -185022330 + L1M4 LINE L1 4844 4914 -1232 1709 173 47 36 chr3 42502248 42502607 -185021971 - MLT1A1 LTR MaLR -2 363 1 1148 261 83 23 chr3 42502607 42503058 -185021520 + L1M4 LINE L1 4914 5403 -743 329 122 19 149 chr3 42503581 42503688 -185020890 - LTR37B LTR ERV1 -177 291 199 324 263 82 23 chr3 42503930 42504101 -185020477 - L1ME3A LINE L1 -208 5962 5782 234 162 0 0 chr3 42504161 42504198 -185020380 - MLT1E LTR MaLR 0 593 557 * 258 239 0 30 chr3 42504195 42504262 -185020316 - MLT1H LTR MaLR -377 172 108 218 303 0 0 chr3 42504459 42504525 -185020053 - MIR SINE MIR -108 154 89 1409 288 17 53 chr3 42506262 42506794 -185017784 - HERVL LTR ERVL -1324 4440 3928 466 328 60 56 chr3 42506831 42507334 -185017244 - HERVL LTR ERVL -3967 1687 1183 189 195 0 0 chr3 42507547 42507588 -185016990 + GA-rich Low_complexity Low_complexity 1 41 0 316 363 19 12 chr3 42508507 42508667 -185015911 - HERVL LTR ERVL -5064 700 540 189 107 0 0 chr3 42508674 42508702 -185015876 + (CA)n Simple_repeat Simple_repeat 2 29 0 22 80 0 0 chr3 42509370 42509420 -185015158 + AT_rich Low_complexity Low_complexity 1 50 0 288 309 85 24 chr3 42510306 42510471 -185014107 - MIR SINE MIR -6 256 82 678 272 130 45 chr3 42510917 42511432 -185013146 - L1ME LINE L1 -348 5822 5264 223 213 16 16 chr3 42511487 42511548 -185013030 + (TTA)n Simple_repeat Simple_repeat 3 63 0 189 0 0 0 chr3 42511878 42511899 -185012679 + (A)n Simple_repeat Simple_repeat 1 21 0 257 224 13 0 chr3 42513325 42513401 -185011177 + (TA)n Simple_repeat Simple_repeat 1 77 0 279 156 49 0 chr3 42513416 42513538 -185011040 + (TA)n Simple_repeat Simple_repeat 2 129 0 24 0 0 0 chr3 42514410 42514434 -185010144 + GC_rich Low_complexity Low_complexity 1 24 0 2554 185 20 13 chr3 42514534 42515542 -185009036 - L1M2 LINE L1 -537 5763 4746 2168 179 75 2 chr3 42515647 42516084 -185008494 + Tigger2 DNA MER2_type 2249 2717 -1 2082 181 24 9 chr3 42516331 42516756 -185007822 - L1MA6 LINE L1 -1 6299 5869 1590 173 66 0 chr3 42517322 42517594 -185006984 + AluSx SINE Alu 1 290 -22 633 168 194 11 chr3 42517608 42517799 -185006779 - MER5C DNA MER1_type -1 323 98 1011 132 7 0 chr3 42518421 42518573 -185006005 + LTR9 LTR ERV1 460 612 0 1394 153 80 49 chr3 42518584 42518872 -185005706 - AluSg SINE Alu -13 297 1 186 43 0 0 chr3 42519307 42519330 -185005248 + (A)n Simple_repeat Simple_repeat 1 23 0 24 0 0 0 chr3 42519941 42519965 -185004613 + GC_rich Low_complexity Low_complexity 1 24 0 1910 109 10 10 chr3 42520318 42520621 -185003957 + L1MA3 LINE L1 5797 6099 -206 955 181 45 15 chr3 42520621 42520820 -185003758 + MSTA LTR MaLR 1 205 -223 257 200 29 0 chr3 42521557 42521627 -185002951 + CT-rich Low_complexity Low_complexity 1 72 0 1710 172 19 16 chr3 42521627 42521935 -185002643 - AluSx SINE Alu -3 309 1 190 370 7 44 chr3 42521950 42522085 -185002493 + MER5A DNA MER1_type 56 185 -4 21 0 0 0 chr3 42523376 42523397 -185001181 + GC_rich Low_complexity Low_complexity 1 21 0 1947 114 0 0 chr3 42523925 42524189 -185000389 + AluSg1 SINE Alu 14 277 -32 293 218 23 46 chr3 42524472 42524559 -185000019 - L2 LINE L2 0 3313 3229 27 35 0 0 chr3 42524680 42524709 -184999869 + GC_rich Low_complexity Low_complexity 1 29 0 729 121 0 17 chr3 42624917 42625033 -184899545 + AluJb SINE Alu 199 312 0 22 0 0 0 chr3 42625586 42625608 -184898970 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 42625843 42625865 -184898713 + AT_rich Low_complexity Low_complexity 1 22 0 41684 43 4 0 chr3 42627214 42633111 -184891467 + L1PA4 LINE L1 228 6147 -8 1619 231 67 62 chr3 42633118 42633845 -184890733 - MER69 DNA AcHobo -150 2376 1646 2230 128 0 0 chr3 42633897 42634203 -184890375 - AluSq SINE Alu -7 306 1 323 297 25 17 chr3 42635267 42635385 -184889193 - MLT1J LTR MaLR -70 441 323 821 313 117 32 chr3 42635399 42635450 -184889128 + MLT1H1 LTR MaLR 9 54 -501 2225 116 0 0 chr3 42635450 42635751 -184888827 + AluSx SINE Alu 1 301 -11 821 313 117 32 chr3 42635751 42636197 -184888381 + MLT1H1 LTR MaLR 54 548 -7 728 256 58 68 chr3 42636204 42636512 -184888066 - MLT1J LTR MaLR -202 309 5 1621 264 84 7 chr3 42636607 42637061 -184887517 - MLT1E2 LTR MaLR -1 625 137 22 35 0 0 chr3 42637942 42637971 -184886607 + AT_rich Low_complexity Low_complexity 1 29 0 212 348 52 15 chr3 42638218 42638353 -184886225 - L2 LINE L2 -183 3089 2950 221 333 50 8 chr3 42639058 42639178 -184885400 + L3b LINE CR1 1121 1245 -338 225 0 0 0 chr3 42639559 42639584 -184884994 + (TTA)n Simple_repeat Simple_repeat 2 26 0 382 324 52 24 chr3 42640280 42640490 -184884088 + MIR SINE MIR 37 252 -10 223 325 12 0 chr3 42640655 42640735 -184883843 - MIR3 SINE MIR -3 205 125 30 17 8 0 chr3 42641256 42641339 -184883239 + AT_rich Low_complexity Low_complexity 1 37 0 3770 29 0 0 chr3 42641600 42642045 -184882533 + L1PA4 LINE L1 5708 6152 -3 2461 226 8 0 chr3 42643372 42643957 -184880621 + L1 LINE L1 4203 4792 -1354 1026 146 4 2 chr3 42643958 42644198 -184880380 + AluSx SINE Alu 1 290 -22 5387 167 20 17 chr3 42644199 42645547 -184879031 + L1PA16 LINE L1 4800 6157 -9 21 36 0 0 chr3 42646231 42646259 -184878319 + AT_rich Low_complexity Low_complexity 1 28 0 1243 196 21 17 chr3 42646996 42647236 -184877342 - AluJo SINE Alu -36 276 36 206 239 0 0 chr3 42647420 42647466 -184877112 - L2 LINE L2 -6 3266 3221 305 284 13 97 chr3 42649066 42649221 -184875357 + L2 LINE L2 2945 3086 -186 202 283 0 0 chr3 42649368 42649421 -184875157 + (TGAA)n Simple_repeat Simple_repeat 1 53 0 26 0 0 0 chr3 42649617 42649643 -184874935 + AT_rich Low_complexity Low_complexity 1 26 0 691 216 7 0 chr3 42650702 42650850 -184873728 - L1M4 LINE L1 -453 5721 5573 1052 317 30 25 chr3 42650850 42651079 -184873499 - L2 LINE L2 -565 2749 2516 2166 114 0 7 chr3 42651079 42651376 -184873202 + AluSg SINE Alu 1 295 -15 1052 317 30 25 chr3 42651376 42651578 -184873000 - L2 LINE L2 -798 2516 2316 786 303 122 16 chr3 42651580 42651956 -184872622 - MLT1H LTR MaLR -1 548 133 21 36 0 0 chr3 42652035 42652063 -184872515 + AT_rich Low_complexity Low_complexity 1 28 0 199 328 114 8 chr3 42652126 42652257 -184872321 - L2 LINE L2 -1158 2156 2012 212 266 16 47 chr3 42652965 42653029 -184871549 - MIR SINE MIR -31 231 170 623 365 33 16 chr3 42653191 42653495 -184871083 + LTR16C LTR ERVL 183 491 0 8005 150 35 3 chr3 42653768 42655938 -184868640 + L1PA11 LINE L1 3973 6174 0 211 303 92 39 chr3 42656162 42656391 -184868187 - MIR SINE MIR 0 262 12 4151 165 20 37 chr3 42657147 42658012 -184866566 - L1MB2 LINE L1 -2 6169 5320 547 200 9 9 chr3 42658013 42658118 -184866460 - U6 snRNA snRNA 0 107 3 600 292 69 46 chr3 42658746 42659051 -184865527 + L2 LINE L2 2968 3279 -34 277 252 309 0 chr3 42659351 42659474 -184865104 - MER5A DNA MER1_type 0 189 29 378 337 101 46 chr3 42659507 42659982 -184864596 - L2 LINE L2 -669 2645 2145 414 286 125 29 chr3 42660431 42661016 -184863562 + L1MDa LINE L1 2439 3101 -3439 1831 143 3 39 chr3 42661161 42661469 -184863109 + AluSx SINE Alu 1 297 -15 1514 58 0 0 chr3 42661483 42661671 -184862907 - L1PA4 LINE L1 -350 5805 5618 2973 42 0 0 chr3 42661671 42662029 -184862549 + L1PA4 LINE L1 5794 6152 -3 31 44 0 0 chr3 42662799 42662844 -184861734 + AT_rich Low_complexity Low_complexity 1 45 0 1638 162 133 16 chr3 42663141 42663524 -184861054 + MSTA LTR MaLR 1 428 0 519 239 236 19 chr3 42663704 42663967 -184860611 - LTR50 LTR ERVL -475 320 1 607 255 103 94 chr3 42664509 42664936 -184859642 - MLT1H1 LTR MaLR 0 555 125 186 43 0 0 chr3 42665550 42665573 -184859005 + (TTA)n Simple_repeat Simple_repeat 2 24 0 231 287 11 23 chr3 42665838 42665925 -184858653 + L1MEd LINE L1 413 498 -6032 259 328 0 0 chr3 42666281 42666345 -184858233 + (CATG)n Simple_repeat Simple_repeat 3 66 0 203 234 31 0 chr3 42666776 42666840 -184857738 + (TA)n Simple_repeat Simple_repeat 1 66 0 266 268 71 50 chr3 42666917 42667115 -184857463 + L1MEd LINE L1 1442 1643 -4887 347 255 61 106 chr3 42667129 42667329 -184857249 + L1MEd LINE L1 1623 1809 -4731 1941 133 30 0 chr3 42667329 42667630 -184856948 + AluSx SINE Alu 1 310 -2 347 255 61 106 chr3 42667630 42667693 -184856885 + L1MEd LINE L1 1809 1873 -4667 304 230 61 31 chr3 42668101 42668317 -184856261 - L1MCc LINE L1 -4922 1501 1393 23 0 0 0 chr3 42668966 42668989 -184855589 + AT_rich Low_complexity Low_complexity 1 23 0 250 219 16 16 chr3 42669059 42669123 -184855455 - L1M LINE L1 -763 5415 5352 333 68 0 0 chr3 42669139 42669183 -184855395 + (TA)n Simple_repeat Simple_repeat 2 45 0 491 334 68 19 chr3 42669240 42669758 -184854820 - L1M4 LINE L1 -906 5240 4698 273 250 22 11 chr3 42669821 42669913 -184854665 - L1ME3 LINE L1 -7 6155 6063 294 29 0 0 chr3 42669930 42669965 -184854613 + (CA)n Simple_repeat Simple_repeat 2 36 0 475 301 88 72 chr3 42670041 42670347 -184854231 + MLT1H LTR MaLR 62 372 -177 551 303 38 60 chr3 42670638 42670828 -184853750 - L1M4 LINE L1 -1692 4454 4274 * 3575 41 0 2 chr3 42670815 42671250 -184853328 + L1PA5 LINE L1 5624 6057 -97 4301 28 0 0 chr3 42670828 42671336 -184853242 + L1PA5 LINE L1 5636 6143 -11 551 303 38 60 chr3 42671336 42671492 -184853086 - L1M4 LINE L1 -1872 4274 4116 228 316 16 37 chr3 42671500 42671687 -184852891 - L1M4 LINE L1 -2102 4044 3862 540 279 93 38 chr3 42672087 42672689 -184851889 - L1M4 LINE L1 -2979 3167 2533 436 268 39 7 chr3 42672704 42672881 -184851697 + L1MA10 LINE L1 5987 6330 -4 288 245 78 0 chr3 42672877 42672979 -184851599 + L1M4 LINE L1 3840 3949 -2197 * 216 67 0 0 chr3 42673054 42673084 -184851494 + (CA)n Simple_repeat Simple_repeat 2 31 0 656 260 31 0 chr3 42673296 42673492 -184851086 + MER105 DNA DNA 1 202 -2 24 32 0 0 chr3 42673858 42673889 -184850689 + AT_rich Low_complexity Low_complexity 1 31 0 2545 64 0 0 chr3 42674342 42674653 -184849925 - AluY SINE Alu 0 311 1 23 0 0 0 chr3 42674726 42674749 -184849829 + AT_rich Low_complexity Low_complexity 1 23 0 297 294 172 31 chr3 42674752 42675078 -184849500 - MLT1L LTR MaLR -27 588 217 860 235 48 118 chr3 42675207 42675624 -184848954 + MSTD LTR MaLR 9 396 0 348 226 89 16 chr3 42675816 42675940 -184848638 + MER94 DNA DNA 2 134 0 383 355 43 0 chr3 42676281 42676467 -184848111 + L2 LINE L2 3120 3313 0 9131 217 23 55 chr3 42676893 42679019 -184845559 + L1M2 LINE L1 3 2060 -4789 22221 189 17 17 chr3 42679022 42682615 -184841963 + L1PA11 LINE L1 2 3592 -4020 180 0 0 0 chr3 42682615 42682635 -184841943 + (CAA)n Simple_repeat Simple_repeat 2 21 0 22221 189 17 17 chr3 42682635 42683124 -184841454 + L1PA11 LINE L1 3592 4079 -3533 2078 147 0 0 chr3 42683124 42683424 -184841154 + AluSx SINE Alu 1 300 -12 22221 189 17 17 chr3 42683424 42685596 -184838982 + L1PA11 LINE L1 4079 7612 0 4353 196 42 33 chr3 42685571 42686817 -184837761 + L1M2 LINE L1 2044 3276 -3572 * 1563 195 0 29 chr3 42686817 42687125 -184837453 + AluJb SINE Alu 4 302 -10 4353 196 42 33 chr3 42687125 42687280 -184837298 + L1M2 LINE L1 3276 3428 -3420 1928 177 0 0 chr3 42687280 42687580 -184836998 - AluSx SINE Alu -12 300 1 4353 196 42 33 chr3 42687580 42687913 -184836665 + L1M2 LINE L1 3428 3792 -3056 21 36 0 0 chr3 42687933 42687961 -184836617 + AT_rich Low_complexity Low_complexity 1 28 0 368 320 176 29 chr3 42688106 42688787 -184835791 + L1M4 LINE L1 2678 3458 -2688 24 0 0 0 chr3 42688790 42688814 -184835764 + AT_rich Low_complexity Low_complexity 1 24 0 632 222 94 11 chr3 42689018 42689103 -184835475 - MER3 DNA MER1_type -1 208 131 2102 91 33 26 chr3 42689103 42689410 -184835168 - AluSx SINE Alu -1 311 3 632 222 94 11 chr3 42689410 42689504 -184835074 - MER3 DNA MER1_type -78 131 14 230 241 35 0 chr3 42689731 42689789 -184834789 - MIR SINE MIR -118 144 85 235 280 0 0 chr3 42690201 42690251 -184834327 + L2 LINE L2 3210 3259 -13 252 77 0 0 chr3 42690498 42690537 -184834041 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 1757 143 68 3 chr3 42691261 42691582 -184832996 - AluSq SINE Alu 0 340 1 252 277 13 110 chr3 42692480 42692635 -184831943 - MIR SINE MIR -66 196 57 185 304 18 0 chr3 42693377 42693433 -184831145 - MIR SINE MIR -120 142 86 235 361 24 0 chr3 42693682 42693765 -184830813 - L3 LINE CR1 -27 1550 1466 2354 92 0 0 chr3 42694770 42695075 -184829503 + AluSg SINE Alu 1 305 -5 351 0 0 0 chr3 42695091 42695130 -184829448 + (TG)n Simple_repeat Simple_repeat 2 40 0 231 283 162 0 chr3 42697164 42697263 -184827315 + MIR3 SINE MIR 55 169 -39 1035 213 9 32 chr3 42697286 42697507 -184827071 - MER20 DNA MER1_type 0 219 4 1970 131 3 14 chr3 42698245 42698536 -184826042 - AluSx SINE Alu -24 288 1 326 206 0 0 chr3 42699552 42699625 -184824953 - L1MB8 LINE L1 -13 6165 6093 4036 208 26 27 chr3 42699637 42699750 -184824828 - L1MB4 LINE L1 0 6180 6068 2078 138 7 0 chr3 42699750 42700055 -184824523 - AluSx SINE Alu -5 307 1 4036 208 26 27 chr3 42700055 42700936 -184823642 - L1MB4 LINE L1 -112 6068 5202 2665 145 25 0 chr3 42700936 42701385 -184823193 - L1PB3 LINE L1 -5 6149 5690 4036 208 26 27 chr3 42701385 42701462 -184823116 - L1MB4 LINE L1 -978 5202 5126 895 271 27 9 chr3 42701794 42702019 -184822559 - L1M4b LINE L1 -6619 240 12 185 361 68 45 chr3 42703828 42703961 -184820617 - L2 LINE L2 0 3272 3137 468 0 0 0 chr3 42703972 42704024 -184820554 + (CA)n Simple_repeat Simple_repeat 1 52 0 5942 29 0 0 chr3 42705101 42705835 -184818743 + L1PA3 LINE L1 5444 6177 0 457 253 11 68 chr3 42707427 42707617 -184816961 + MER96B DNA MER1_type? 1 179 -238 311 335 88 29 chr3 42708903 42709312 -184815266 + HAL1 LINE L1 1208 1640 -867 2029 136 3 0 chr3 42709354 42709655 -184814923 - AluSg SINE Alu -8 302 1 327 248 21 28 chr3 42709786 42710070 -184814508 + (CAATA)n Simple_repeat Simple_repeat 1 281 0 320 294 70 7 chr3 42710250 42710393 -184814185 + HAL1b LINE L1 760 911 -437 181 57 57 0 chr3 42710589 42710624 -184813954 + (TA)n Simple_repeat Simple_repeat 2 38 0 2782 142 29 0 chr3 42711502 42711954 -184812624 + LTR24 LTR ERV1 3 467 0 2020 139 0 7 chr3 42712421 42712731 -184811847 - AluSq SINE Alu -5 308 1 37 23 0 0 chr3 42712821 42712865 -184811713 + AT_rich Low_complexity Low_complexity 1 44 0 30 27 0 0 chr3 42712960 42712997 -184811581 + AT_rich Low_complexity Low_complexity 1 37 0 213 154 0 0 chr3 42713687 42713726 -184810852 + (TG)n Simple_repeat Simple_repeat 2 40 0 511 237 70 23 chr3 42713836 42713972 -184810606 + MER5B DNA MER1_type 4 129 -49 2079 135 3 0 chr3 42715057 42715360 -184809218 + AluSg SINE Alu 4 307 -3 1927 157 25 16 chr3 42715920 42716284 -184808294 + LTR23 LTR ERV1 71 437 0 203 288 34 17 chr3 42716717 42716776 -184807802 - MIR3 SINE MIR -41 167 108 2040 110 0 31 chr3 42717900 42718241 -184806337 + AluSg SINE Alu 1 332 0 239 222 62 12 chr3 42718490 42718571 -184806007 + L1ME LINE L1 3875 3959 -2187 182 219 24 0 chr3 42718806 42718847 -184805731 + L2 LINE L2 3186 3227 -86 445 291 102 55 chr3 42719710 42720054 -184804524 + L1ME LINE L1 5296 5655 -466 376 292 125 16 chr3 42721036 42721228 -184803350 - MLT1L LTR MaLR -221 394 182 22 70 0 0 chr3 42721522 42721565 -184803013 + AT_rich Low_complexity Low_complexity 1 43 0 266 350 25 17 chr3 42722943 42723063 -184801515 - MIR SINE MIR -15 247 127 2111 194 84 98 chr3 42723082 42723819 -184800759 - LTR8A LTR ERV1 0 727 1 1117 289 23 3 chr3 42723821 42724126 -184800452 - HUERS-P1 LTR ERV1 -1 6262 5952 2838 155 2 2 chr3 42724231 42724847 -184799731 - L1PA14 LINE L1 -700 5451 4842 5175 90 3 4 chr3 42724848 42725569 -184799009 + L1PA14 LINE L1 5438 6157 -4 5581 206 111 109 chr3 42725622 42726796 -184797782 - HUERS-P1 LTR ERV1 -411 5852 4681 851 195 30 0 chr3 42726796 42726965 -184797613 + FRAM SINE Alu 1 173 -3 5581 206 111 109 chr3 42726965 42728371 -184796207 - HUERS-P1 LTR ERV1 -1582 4681 3101 1119 288 121 33 chr3 42728597 42728783 -184795795 - MLT1G LTR MaLR -24 566 398 2221 183 39 7 chr3 42728783 42729194 -184795384 - MSTB LTR MaLR -2 424 1 1119 288 121 33 chr3 42729194 42729563 -184795015 - MLT1G LTR MaLR -192 398 1 2714 96 0 0 chr3 42729936 42730300 -184794278 - THE1B LTR MaLR 0 364 1 264 252 79 47 chr3 42730796 42730923 -184793655 - Charlie8 DNA MER1_type -2212 205 75 509 354 63 67 chr3 42731665 42732202 -184792376 - L1MC/D LINE L1 -1988 5820 5286 3105 225 76 36 chr3 42732264 42733492 -184791086 - L1MA6 LINE L1 -10 6290 5019 3141 205 20 10 chr3 42733512 42734204 -184790374 - L1MA6 LINE L1 -1701 4445 3747 487 196 0 11 chr3 42734205 42734297 -184790281 + Tigger2a DNA MER2_type 1 91 -343 207 0 0 0 chr3 42734328 42734351 -184790227 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 438 69 0 0 chr3 42734350 42734408 -184790170 + (TA)n Simple_repeat Simple_repeat 1 58 0 1717 200 47 6 chr3 42734435 42734775 -184789803 + Tigger2a DNA MER2_type 91 444 0 5030 227 30 17 chr3 42734812 42736220 -184788358 - L1MA6 LINE L1 -2468 3678 2253 2197 157 19 11 chr3 42736230 42736605 -184787973 - Tigger1 DNA MER2_type -1993 425 48 34 72 0 0 chr3 42736668 42736737 -184787841 + AT_rich Low_complexity Low_complexity 1 69 0 534 292 101 29 chr3 42737592 42738296 -184786282 + L1ME LINE L1 717 1527 -4734 1018 309 40 13 chr3 42738412 42739034 -184785544 + L1ME LINE L1 3140 3778 -2302 * 1453 219 156 11 chr3 42739027 42739466 -184785112 + L1ME3A LINE L1 5654 6154 -10 22 70 0 0 chr3 42740247 42740290 -184784288 + AT_rich Low_complexity Low_complexity 1 43 0 201 182 0 0 chr3 42741884 42741917 -184782661 + T-rich Low_complexity Low_complexity 6 38 0 474 75 0 0 chr3 42742850 42742917 -184781661 + (ATG)n Simple_repeat Simple_repeat 2 68 0 501 203 14 7 chr3 42743552 42743700 -184780878 + GA-rich Low_complexity Low_complexity 3 151 0 1256 186 74 35 chr3 42743757 42744069 -184780509 - MER33 DNA MER1_type 0 324 1 693 241 123 6 chr3 42744069 42744239 -184780339 + LTR16A1 LTR ERVL 265 454 -3 432 293 153 0 chr3 42745421 42745571 -184779007 + MIR3 SINE MIR 36 208 0 206 208 83 0 chr3 42745721 42745769 -184778809 + MIR SINE MIR 128 179 -83 247 353 29 29 chr3 42747178 42747314 -184777264 - L2 LINE L2 0 3272 3137 309 318 71 56 chr3 42747618 42747816 -184776762 + MIR SINE MIR 2 202 -60 1668 222 34 49 chr3 42748371 42748840 -184775738 - MLT1C LTR MaLR 0 467 6 23 33 0 0 chr3 42749231 42749261 -184775317 + AT_rich Low_complexity Low_complexity 1 30 0 245 318 68 11 chr3 42749906 42749994 -184774584 + L2 LINE L2 2889 2981 -291 24 0 0 0 chr3 42750048 42750072 -184774506 + AT_rich Low_complexity Low_complexity 1 24 0 271 263 29 44 chr3 42750289 42750426 -184774152 - MLT1L LTR MaLR -296 319 185 180 97 0 0 chr3 42750759 42750790 -184773788 + (TG)n Simple_repeat Simple_repeat 2 32 0 252 119 356 0 chr3 42750804 42750863 -184773715 - MADE1 DNA Mariner 0 80 1 580 282 92 0 chr3 42751100 42751274 -184773304 + MER3 DNA MER1_type 15 204 -5 214 258 299 0 chr3 42752072 42752169 -184772409 + MIR SINE MIR 81 206 -56 27 49 0 0 chr3 42754501 42754542 -184770036 + AT_rich Low_complexity Low_complexity 1 41 0 544 235 39 26 chr3 42755152 42755305 -184769273 + MIR SINE MIR 69 223 -39 342 264 107 61 chr3 42755734 42755995 -184768583 + L1MC2 LINE L1 1127 1399 -5235 199 128 26 39 chr3 42755999 42756011 -184768567 + (TA)n Simple_repeat Simple_repeat 2 13 -65 593 88 0 0 chr3 42756011 42756091 -184768487 + MADE1 DNA Mariner 1 80 0 199 128 26 39 chr3 42756091 42756156 -184768422 + (TA)n Simple_repeat Simple_repeat 13 78 0 3165 250 30 3 chr3 42756158 42757038 -184767540 + L1MC2 LINE L1 4954 5856 -788 3900 185 27 28 chr3 42757044 42757486 -184767092 + L1MC2 LINE L1 5944 6385 -457 2084 127 38 24 chr3 42757486 42757856 -184766722 - THE1C LTR MaLR 0 375 1 3900 185 27 28 chr3 42757856 42758304 -184766274 + L1MC2 LINE L1 6385 6833 -9 303 332 28 65 chr3 42758305 42758522 -184766056 + L1ME LINE L1 1297 1505 -5037 558 296 72 35 chr3 42758569 42758917 -184765661 + L1ME LINE L1 1649 2009 -4816 228 182 55 0 chr3 42758998 42759053 -184765525 - L1ME LINE L1 -385 5777 5720 307 256 23 0 chr3 42759055 42759141 -184765437 - MIR SINE MIR -3 259 172 442 208 8 67 chr3 42759141 42759261 -184765317 - MER63 DNA MER1_type -97 739 1 186 43 0 0 chr3 42759795 42759818 -184764760 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 338 276 188 21 chr3 42760258 42760450 -184764128 + MIR SINE MIR 25 248 -14 416 349 13 7 chr3 42760635 42760787 -184763791 - MER5A DNA MER1_type -1 188 36 252 369 34 13 chr3 42760653 42760802 -184763776 + MER5A DNA MER1_type 32 183 -6 * 725 256 44 0 chr3 42761129 42761289 -184763289 + MER45A DNA AcHobo 1 167 -11 251 358 33 0 chr3 42762203 42762323 -184762255 + MIR SINE MIR 49 172 -90 2257 84 0 0 chr3 42762754 42763050 -184761528 + AluY SINE Alu 1 296 -15 889 174 20 61 chr3 42763196 42763392 -184761186 - MER5A DNA MER1_type -1 188 1 273 98 0 0 chr3 42763927 42763968 -184760610 + (TG)n Simple_repeat Simple_repeat 2 42 0 414 283 113 70 chr3 42765272 42765732 -184758846 + HAL1 LINE L1 875 1354 -1153 294 393 27 9 chr3 42765735 42765954 -184758624 + L1MEc LINE L1 149 371 -6025 338 322 7 13 chr3 42766314 42766466 -184758112 + L1MEc LINE L1 705 855 -5541 2061 261 66 53 chr3 42766489 42767311 -184757267 + L1MEc LINE L1 1995 2808 -3407 1745 170 97 30 chr3 42767311 42767712 -184756866 - MSTC LTR MaLR 0 428 1 2061 261 66 53 chr3 42767712 42768467 -184756111 + L1MEc LINE L1 2808 3552 -2663 1446 338 62 7 chr3 42768472 42769035 -184755543 + L1PA13 LINE L1 19 612 -6175 9037 243 30 10 chr3 42769311 42770471 -184754107 + L1PA13 LINE L1 1341 2477 -4320 1960 117 6 50 chr3 42770471 42770788 -184753790 - AluSq SINE Alu -10 303 1 9037 243 30 10 chr3 42770788 42773365 -184751213 + L1PA13 LINE L1 2477 5166 -1631 264 272 174 10 chr3 42773384 42773579 -184750999 + L1MEc LINE L1 4496 4722 -1493 357 226 68 55 chr3 42773645 42773791 -184750787 + L1MEc LINE L1 4925 5072 -1143 23 33 0 0 chr3 42773875 42773905 -184750673 + AT_rich Low_complexity Low_complexity 1 30 0 1748 201 28 42 chr3 42773991 42774390 -184750188 - Charlie1 DNA MER1_type 0 2761 2369 1403 205 16 68 chr3 42774390 42774620 -184749958 - MLT1A1 LTR MaLR 0 365 161 2264 117 0 0 chr3 42774620 42774929 -184749649 - AluSg SINE Alu -1 309 1 1403 205 16 68 chr3 42774929 42775083 -184749495 - MLT1A1 LTR MaLR -204 161 1 1748 201 28 42 chr3 42775083 42775185 -184749393 - Charlie1 DNA MER1_type -392 2369 2267 822 227 23 0 chr3 42775187 42775359 -184749219 + FRAM SINE Alu 1 174 -2 605 204 22 0 chr3 42775363 42775500 -184749078 - Charlie1 DNA MER1_type -483 2278 2139 513 331 33 18 chr3 42776282 42776557 -184748021 - MLT1K LTR MaLR -54 534 256 738 124 0 0 chr3 42777384 42777505 -184747073 + (GGGA)n Simple_repeat Simple_repeat 4 124 0 189 121 0 0 chr3 42777921 42777954 -184746624 + (CA)n Simple_repeat Simple_repeat 2 34 0 318 286 67 8 chr3 42778854 42778973 -184745605 + MLT1H LTR MaLR 1 126 -423 1617 212 11 72 chr3 42779019 42779476 -184745102 + MER63B DNA MER1_type 2 430 -6 907 278 77 84 chr3 42780579 42781199 -184743379 + L2 LINE L2 2692 3313 0 215 118 0 0 chr3 42782506 42782540 -184742038 + MIR SINE MIR 203 236 -26 267 321 224 28 chr3 42782611 42782901 -184741677 - L2 LINE L2 -571 2743 2397 2663 39 0 3 chr3 42783670 42783982 -184740596 + AluY SINE Alu 1 311 0 274 305 12 0 chr3 42783996 42784078 -184740500 - L2 LINE L2 -596 2718 2636 1996 148 3 0 chr3 42784121 42784418 -184740160 + AluSx SINE Alu 1 298 -14 21 36 0 0 chr3 42784418 42784446 -184740132 + AT_rich Low_complexity Low_complexity 1 28 0 419 294 239 6 chr3 42784648 42784828 -184739750 + MIR SINE MIR 41 262 0 275 281 50 38 chr3 42785670 42785830 -184738748 + MIR3 SINE MIR 40 201 -7 377 359 0 0 chr3 42786227 42786344 -184738234 + L2 LINE L2 3197 3313 0 786 311 111 37 chr3 42786432 42786892 -184737686 - MLT1G LTR MaLR 0 590 97 21 57 0 0 chr3 42787182 42787217 -184737361 + AT_rich Low_complexity Low_complexity 1 35 0 386 127 14 0 chr3 42787724 42787795 -184736783 + (CA)n Simple_repeat Simple_repeat 1 72 0 23 0 0 0 chr3 42788114 42788137 -184736441 + AT_rich Low_complexity Low_complexity 1 23 0 215 329 4 123 chr3 42788674 42788742 -184735836 - MIR SINE MIR -59 203 129 2412 85 3 0 chr3 42788742 42789049 -184735529 - AluY SINE Alu -3 308 1 215 329 4 123 chr3 42789049 42789208 -184735370 - MIR SINE MIR -133 129 3 1141 203 22 4 chr3 42790756 42790988 -184733590 - MER96B DNA MER1_type? -181 236 1 180 0 0 0 chr3 42791022 42791042 -184733536 + (T)n Simple_repeat Simple_repeat 1 20 0 330 280 34 0 chr3 42792170 42792288 -184732290 + MER103 DNA DNA 1 122 -44 2341 115 56 8 chr3 42792307 42792664 -184731914 - THE1C LTR MaLR 0 375 2 10099 128 32 7 chr3 42792665 42794062 -184730516 - THE1C-int LTR MaLR 0 1580 139 1997 157 49 76 chr3 42794062 42794508 -184730070 + MER61C LTR ERV1 1 434 0 10099 128 32 7 chr3 42794508 42794651 -184729927 - THE1C-int LTR MaLR -1441 139 1 2554 120 5 8 chr3 42794651 42795027 -184729551 - THE1C LTR MaLR 0 375 1 255 152 0 0 chr3 42796103 42796149 -184728429 + (AATTG)n Simple_repeat Simple_repeat 3 48 0 191 254 15 60 chr3 42797021 42797088 -184727490 + MIR SINE MIR 79 142 -66 545 380 16 8 chr3 42797104 42797354 -184727224 - MIR SINE MIR -8 254 3 1547 91 0 0 chr3 42798202 42798410 -184726168 - AluY SINE Alu -3 308 101 201 308 132 22 chr3 42798830 42798921 -184725657 - L2 LINE L2 -5 3267 3167 1054 172 23 16 chr3 42799311 42799639 -184724939 + L1PA16 LINE L1 5147 5476 -690 1201 150 13 53 chr3 42799639 42799865 -184724713 + AluJb SINE Alu 87 303 -9 2112 135 7 0 chr3 42799865 42800169 -184724409 + AluSp SINE Alu 1 306 -7 4071 137 27 3 chr3 42800180 42800845 -184723733 + L1PA16 LINE L1 5477 6157 -9 21 36 0 0 chr3 42802571 42802599 -184721979 + AT_rich Low_complexity Low_complexity 1 28 0 553 298 181 19 chr3 42803939 42804358 -184720220 - MLT1H LTR MaLR -2 547 61 1240 204 23 77 chr3 42804980 42805422 -184719156 - Charlie1 DNA MER1_type -1 2760 2343 251 268 0 0 chr3 42805419 42805475 -184719103 - Charlie1 DNA MER1_type -2698 63 8 * 198 268 52 0 chr3 42806276 42806354 -184718224 + MIR SINE MIR 71 147 -61 225 361 96 0 chr3 42806790 42806956 -184717622 - MIR SINE MIR -74 188 7 195 42 0 0 chr3 42807281 42807305 -184717273 + (ATG)n Simple_repeat Simple_repeat 2 25 0 240 393 130 20 chr3 42808142 42808804 -184715774 - L2 LINE L2 -609 2705 1971 517 385 88 18 chr3 42808905 42809646 -184714932 - L2 LINE L2 -522 2792 2000 2217 117 0 0 chr3 42809671 42809978 -184714600 + AluSc SINE Alu 1 307 -2 315 318 82 29 chr3 42810931 42811101 -184713477 + MIR SINE MIR 70 248 -14 28 29 0 0 chr3 42812481 42812516 -184712062 + AT_rich Low_complexity Low_complexity 1 35 0 378 217 0 0 chr3 42812687 42812802 -184711776 + (TA)n Simple_repeat Simple_repeat 2 116 0 281 303 49 37 chr3 42813461 42813623 -184710955 - MIR SINE MIR -50 212 49 363 339 31 26 chr3 42813627 42813819 -184710759 - L2 LINE L2 -1 3312 3120 287 299 124 60 chr3 42814497 42814686 -184709892 + MIR SINE MIR 10 207 -55 2733 136 19 0 chr3 42814977 42815397 -184709181 - MSTA LTR MaLR 0 428 1 198 0 0 0 chr3 42815771 42815793 -184708785 + (TAA)n Simple_repeat Simple_repeat 2 23 0 2889 16 0 0 chr3 42817669 42817987 -184706591 - AluYb8 SINE Alu 0 318 1 197 303 67 106 chr3 42818417 42818625 -184705953 - L3 LINE CR1 -12 1565 1366 369 302 26 68 chr3 42818863 42819055 -184705523 + MIR SINE MIR 42 225 -37 331 248 108 31 chr3 42820073 42820202 -184704376 + MIR SINE MIR 74 212 -50 261 0 0 0 chr3 42820273 42820302 -184704276 + (TG)n Simple_repeat Simple_repeat 2 30 0 603 212 104 37 chr3 42820561 42820802 -184703776 - MER63 DNA MER1_type 0 1061 805 1324 186 156 16 chr3 42820831 42821138 -184703440 + MLT1F1 LTR MaLR 120 469 -98 322 376 28 14 chr3 42821341 42821628 -184702950 - MER89-int LTR ERV1 -3082 3719 3429 27 62 0 0 chr3 42822448 42822496 -184702082 + AT_rich Low_complexity Low_complexity 1 48 0 29 60 0 0 chr3 42823007 42823057 -184701521 + AT_rich Low_complexity Low_complexity 1 50 0 312 27 0 0 chr3 42824331 42824368 -184700210 + (TTTTG)n Simple_repeat Simple_repeat 3 39 0 21 36 0 0 chr3 42825253 42825281 -184699297 + AT_rich Low_complexity Low_complexity 1 28 0 237 346 0 19 chr3 42825341 42825445 -184699133 - HAL1 LINE L1 -803 1704 1603 198 380 58 7 chr3 42825448 42825585 -184698993 - L2 LINE L2 -202 3070 2927 324 322 46 54 chr3 42825839 42826100 -184698478 - L2 LINE L2 -616 2698 2440 2224 69 29 0 chr3 42827239 42827514 -184697064 + AluY SINE Alu 21 303 -8 3934 141 9 3 chr3 42828248 42828879 -184695699 + L1PB3 LINE L1 5520 6154 0 21 0 0 0 chr3 42828879 42828900 -184695678 + AT_rich Low_complexity Low_complexity 1 21 0 3523 263 102 92 chr3 42828985 42829346 -184695232 + L2 LINE L2 455 811 -2503 2056 103 32 3 chr3 42829346 42829628 -184694950 - AluSc SINE Alu -19 290 1 3523 263 102 92 chr3 42829628 42830065 -184694513 + L2 LINE L2 811 1242 -2072 1150 199 145 15 chr3 42830065 42830327 -184694251 - AluJo SINE Alu -4 298 3 3523 263 102 92 chr3 42830327 42830924 -184693654 + L2 LINE L2 1242 1832 -1482 326 322 9 9 chr3 42830924 42831039 -184693539 - MER94 DNA DNA -4 130 16 3523 263 102 92 chr3 42831039 42831653 -184692925 + L2 LINE L2 1832 2600 -714 5606 202 48 39 chr3 42831981 42834831 -184689747 - L1MC2 LINE L1 -2 6760 3891 2207 135 19 14 chr3 42834836 42835198 -184689380 + THE1B LTR MaLR 1 364 0 2563 247 94 34 chr3 42835199 42836126 -184688452 - L1MC2 LINE L1 -2825 3739 2756 1496 223 21 116 chr3 42836126 42836696 -184687882 + MLT2B1 LTR ERVL 5 520 0 2563 247 94 34 chr3 42836696 42837009 -184687569 - L1MC2 LINE L1 -3808 2756 2463 3349 200 89 40 chr3 42837028 42838384 -184686194 - L1MC2 LINE L1 -4399 2165 696 2648 196 55 62 chr3 42838384 42839077 -184685501 + LTR8 LTR ERV1 3 690 -1 3349 200 89 40 chr3 42839077 42839164 -184685414 - L1MC2 LINE L1 -5868 696 615 244 220 0 0 chr3 42839551 42839601 -184684977 - L1MC2 LINE L1 -5418 627 578 2846 187 16 82 chr3 42839626 42840337 -184684241 - MER4D LTR ERV1 -2 901 238 1510 186 28 14 chr3 42840400 42840690 -184683888 - MER49 LTR ERV1 -629 294 1 3311 141 2 42 chr3 42840810 42841357 -184683221 + MER61E LTR ERV1 1 525 -44 895 227 25 5 chr3 42841362 42841560 -184683018 - L1MC2 LINE L1 -5847 717 516 1023 187 26 130 chr3 42841806 42842153 -184682425 - MER67D LTR ERV1 -203 311 1 234 162 0 0 chr3 42842153 42842190 -184682388 + L2 LINE L2 2593 2629 -685 27 0 0 0 chr3 42842241 42842268 -184682310 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr3 42842371 42842399 -184682179 + AT_rich Low_complexity Low_complexity 1 28 0 669 298 17 57 chr3 42842432 42842785 -184681793 - MLT1H LTR MaLR -187 362 24 314 266 95 44 chr3 42842809 42842967 -184681611 + L2 LINE L2 3148 3313 0 563 182 26 47 chr3 42843799 42843991 -184680587 - MER53 DNA DNA -1 188 1 2321 106 0 0 chr3 42844104 42844407 -184680171 + AluY SINE Alu 1 303 -8 220 284 45 0 chr3 42844909 42844976 -184679602 + MIR SINE MIR 59 128 -80 818 285 183 43 chr3 42844988 42845925 -184678653 - L2 LINE L2 -8 3305 2219 1917 141 0 23 chr3 42846270 42846574 -184678004 - AluSx SINE Alu -15 297 1 1393 157 113 7 chr3 42846627 42846901 -184677677 + MER44D DNA MER2_type 1 573 -36 589 272 56 21 chr3 42847817 42848128 -184676450 + MLT1H1 LTR MaLR 8 373 -222 29 47 0 0 chr3 42848573 42848616 -184675962 + AT_rich Low_complexity Low_complexity 1 43 0 23 0 0 0 chr3 42848710 42848733 -184675845 + AT_rich Low_complexity Low_complexity 1 23 0 352 303 128 5 chr3 42850181 42850376 -184674202 + L1ME3A LINE L1 3516 3734 -2412 1418 256 77 90 chr3 42850475 42851231 -184673347 + L1ME3A LINE L1 4487 5251 -919 360 64 0 0 chr3 42851231 42851278 -184673300 + (CA)n Simple_repeat Simple_repeat 2 48 0 1418 256 77 90 chr3 42851278 42852216 -184672362 + L1ME3A LINE L1 5251 6165 -5 320 333 27 4 chr3 42852254 42852479 -184672099 + L1ME3 LINE L1 4617 4846 -1300 1095 298 74 9 chr3 42852612 42853287 -184671291 + L1ME3 LINE L1 5254 5972 -190 348 143 0 0 chr3 42853320 42853383 -184671195 + L1M LINE L1 5254 5316 -988 382 339 35 32 chr3 42853401 42853770 -184670808 + L1PA12 LINE L1 2 371 -7210 2211 212 44 30 chr3 42854818 42855691 -184668887 + L1PA12 LINE L1 2328 3266 -4318 28840 49 48 2 chr3 42855708 42859387 -184665191 + L1P LINE L1 9 3857 -2289 2464 107 10 0 chr3 42859383 42859766 -184664812 - L1P LINE L1 -743 5403 5017 * 3509 232 33 4 chr3 42859754 42860663 -184663915 + L1PA12 LINE L1 3766 4700 -2884 3040 163 26 66 chr3 42860679 42860995 -184663583 + L1MA4 LINE L1 5474 5801 -499 249 57 0 0 chr3 42860995 42861030 -184663548 + (TA)n Simple_repeat Simple_repeat 2 36 0 3040 163 26 66 chr3 42861030 42861408 -184663170 + L1MA4 LINE L1 5801 6140 -160 1222 269 87 17 chr3 42861541 42862136 -184662442 + HAL1b LINE L1 696 1332 -16 390 252 203 0 chr3 42862849 42862972 -184661606 - MER5A DNA MER1_type -6 183 36 239 250 62 25 chr3 42863043 42863123 -184661455 + L2 LINE L2 3188 3270 -2 180 294 110 28 chr3 42864669 42864778 -184659800 + L2 LINE L2 3196 3313 0 1681 158 91 32 chr3 42864983 42865339 -184659239 - THE1C LTR MaLR 0 375 2 1079 265 22 63 chr3 42866076 42866488 -184658090 + L1MCb LINE L1 77 471 -5574 234 295 67 27 chr3 42866982 42867206 -184657372 - HAL1b LINE L1 -25 1323 1091 205 309 0 0 chr3 42867489 42867544 -184657034 + (CA)n Simple_repeat Simple_repeat 2 56 0 485 312 130 14 chr3 42867579 42867925 -184656653 + HAL1 LINE L1 1475 1860 -647 328 313 124 62 chr3 42867955 42868373 -184656205 + HAL1 LINE L1 2060 2503 -4 598 288 63 62 chr3 42868375 42868976 -184655602 - HAL1b LINE L1 -265 1083 482 4830 83 74 109 chr3 42869589 42870445 -184654133 - LTR12 LTR ERV1 0 826 1 408 339 39 17 chr3 42871715 42871948 -184652630 - L1ME LINE L1 -479 5642 5405 3095 132 18 14 chr3 42872476 42872977 -184651601 + L1PA16 LINE L1 5664 6166 0 2512 110 13 11 chr3 42873231 42873605 -184650973 - THE1C LTR MaLR 0 375 1 24 67 0 0 chr3 42873838 42873883 -184650695 + AT_rich Low_complexity Low_complexity 1 45 0 2719 251 75 29 chr3 42874875 42876046 -184648532 - L1ME LINE L1 -907 5239 4015 1201 143 46 0 chr3 42876058 42876274 -184648304 - Tigger7 DNA MER2_type -1 2490 2265 287 204 0 0 chr3 42876271 42876320 -184648258 - Tigger7 DNA MER2_type -501 49 1 * 2722 267 73 16 chr3 42876359 42877560 -184647018 - L1ME LINE L1 -2473 3673 2404 1704 204 22 113 chr3 42877570 42878153 -184646425 - L1MA9 LINE L1 -271 6041 5512 1623 141 145 7 chr3 42878158 42878462 -184646116 + THE1C LTR MaLR 1 346 -29 198 0 0 0 chr3 42878462 42878484 -184646094 + (TTA)n Simple_repeat Simple_repeat 3 24 0 38516 63 42 0 chr3 42878484 42884355 -184640223 - L1PA5 LINE L1 -18 6136 11 256 167 0 0 chr3 42884361 42884403 -184640175 + THE1C LTR MaLR 387 428 0 1397 151 11 19 chr3 42884411 42884806 -184639772 - L1MA9 LINE L1 -746 5400 5107 27 49 0 0 chr3 42884837 42884878 -184639700 + AT_rich Low_complexity Low_complexity 1 41 0 192 40 0 0 chr3 42885489 42885514 -184639064 + (TG)n Simple_repeat Simple_repeat 2 26 0 180 0 0 0 chr3 42886670 42886690 -184637888 + (TTA)n Simple_repeat Simple_repeat 2 21 0 324 0 0 0 chr3 42888196 42888232 -184636346 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 1693 242 56 19 chr3 42888500 42888980 -184635598 - MLT1D LTR MaLR 0 505 8 246 288 0 0 chr3 42889155 42889221 -184635357 + MER116 DNA Mariner 1 66 -14 543 261 60 27 chr3 42889230 42889414 -184635164 - MIR SINE MIR -57 205 16 223 309 0 0 chr3 42889618 42889702 -184634876 + A-rich Low_complexity Low_complexity 1 84 0 221 216 0 0 chr3 42889886 42889923 -184634655 + polypurine Low_complexity Low_complexity 2 38 0 235 293 49 0 chr3 42890149 42890231 -184634347 + L1MC4 LINE L1 6618 6703 -1339 2255 115 0 0 chr3 42890258 42890553 -184634025 + AluSg SINE Alu 1 295 -15 956 241 59 96 chr3 42891394 42891670 -184632908 - MLT2C2 LTR ERVL -2 462 210 2453 30 40 16 chr3 42891670 42891974 -184632604 + AluY SINE Alu 1 311 0 956 241 59 96 chr3 42891974 42892175 -184632403 - MLT2C2 LTR ERVL -254 210 3 24 32 0 0 chr3 42892790 42892821 -184631757 + AT_rich Low_complexity Low_complexity 1 31 0 237 262 97 97 chr3 42894590 42894735 -184629843 - MIR SINE MIR -69 193 49 236 233 224 43 chr3 42895644 42895760 -184628818 - MIR SINE MIR -17 245 109 652 251 73 11 chr3 42895865 42896056 -184628522 - MIR SINE MIR -58 204 2 21 0 0 0 chr3 42896072 42896093 -184628485 + AT_rich Low_complexity Low_complexity 1 21 0 605 210 25 0 chr3 42896105 42896224 -184628354 + FLAM_C SINE Alu 1 122 -21 412 301 31 31 chr3 42896850 42897013 -184627565 - L2 LINE L2 -6 3307 3145 180 343 146 19 chr3 42897211 42897424 -184627154 + L2 LINE L2 1854 2093 -1221 592 171 17 25 chr3 42897809 42898050 -184626528 + (TA)n Simple_repeat Simple_repeat 1 239 0 181 245 94 0 chr3 42898053 42898106 -184626472 + L2 LINE L2 3255 3312 -1 269 313 76 30 chr3 42898186 42898317 -184626261 - L2 LINE L2 -3 3269 3133 26 0 0 0 chr3 42899740 42899766 -184624812 + AT_rich Low_complexity Low_complexity 1 26 0 316 59 39 0 chr3 42900089 42900140 -184624438 + (TC)n Simple_repeat Simple_repeat 1 53 0 368 281 100 56 chr3 42900151 42900382 -184624196 - L1ME3A LINE L1 -11 6159 5919 359 278 201 48 chr3 42900488 42900976 -184623602 - L2 LINE L2 -37 3276 2710 2223 84 3 7 chr3 42900976 42901275 -184623303 - AluY SINE Alu -13 298 1 359 278 201 48 chr3 42901275 42901326 -184623252 - L2 LINE L2 -603 2710 2668 273 338 50 7 chr3 42902069 42902208 -184622370 + MIR SINE MIR 47 191 -71 716 146 76 21 chr3 42902975 42903119 -184621459 - MER61B LTR ERV1 0 425 274 287 188 0 0 chr3 42903118 42903166 -184621412 - MER61A LTR ERV1 -295 48 1 * 13702 96 24 50 chr3 42903166 42905324 -184619254 - MER61A-int LTR ERV1 0 5217 3116 323 303 58 13 chr3 42905326 42905481 -184619097 + MIR SINE MIR 39 200 -62 515 130 24 57 chr3 42905482 42905605 -184618973 + L1MA8 LINE L1 6173 6291 0 29 0 0 0 chr3 42905670 42905699 -184618879 + AT_rich Low_complexity Low_complexity 1 29 0 263 368 49 12 chr3 42905780 42905943 -184618635 + MIR3 SINE MIR 40 208 0 203 371 9 19 chr3 42906089 42906194 -184618384 + MIR3 SINE MIR 87 190 -18 536 335 81 70 chr3 42906465 42907021 -184617557 - L2 LINE L2 -705 2609 2048 2282 119 119 8 chr3 42910177 42910562 -184614016 - MSTA LTR MaLR 0 428 1 362 356 23 0 chr3 42911989 42912121 -184612457 - L2 LINE L2 0 3313 3179 201 314 0 0 chr3 42912531 42912582 -184611996 + MIR SINE MIR 201 251 -11 2081 138 0 7 chr3 42912651 42912956 -184611622 - AluSx SINE Alu -9 303 1 812 193 18 0 chr3 42914226 42914392 -184610186 + FRAM SINE Alu 8 176 0 5127 186 32 44 chr3 42914957 42915994 -184608584 - L1MC1 LINE L1 -7 6606 5557 270 173 77 0 chr3 42915994 42916046 -184608532 + MADE1 DNA Mariner 1 56 -24 5127 186 32 44 chr3 42916046 42916298 -184608280 - L1MC1 LINE L1 -1056 5557 5303 8096 165 84 56 chr3 42916299 42916345 -184608233 - L1MC1 LINE L1 -4444 1982 1939 2212 114 3 10 chr3 42916345 42916651 -184607927 + AluSx SINE Alu 1 304 -8 8096 165 84 56 chr3 42916651 42918516 -184606062 - L1MC1 LINE L1 -4487 1939 17 1217 241 40 64 chr3 42919939 42920473 -184604105 - L1M4c LINE L1 -4459 1924 1188 424 345 75 31 chr3 42921285 42921607 -184602971 + LTR16C LTR ERVL 156 491 0 32 26 0 0 chr3 42922644 42922683 -184601895 + AT_rich Low_complexity Low_complexity 1 39 0 841 239 19 46 chr3 42922751 42923010 -184601568 - L1ME3 LINE L1 -1 6161 5910 246 301 16 8 chr3 42923257 42923380 -184601198 + L1MEd LINE L1 27 150 -5969 276 85 65 35 chr3 42923392 42923457 -184601121 + AluSg/x SINE Alu 120 178 -124 5272 180 9 39 chr3 42923457 42925569 -184599009 + L1P3 LINE L1 344 2449 -4012 6269 90 8 1 chr3 42925571 42926727 -184597851 + L1PA8A LINE L1 4976 6129 -2 578 318 71 21 chr3 42926787 42927067 -184597511 + L1MEd LINE L1 396 689 -5430 186 71 0 0 chr3 42927107 42927135 -184597443 + (TA)n Simple_repeat Simple_repeat 1 28 0 260 292 35 74 chr3 42927372 42927629 -184596949 + L1MEd LINE L1 1011 1257 -4862 32 0 0 0 chr3 42927669 42927701 -184596877 + AT_rich Low_complexity Low_complexity 1 32 0 32 26 0 0 chr3 42928189 42928228 -184596350 + AT_rich Low_complexity Low_complexity 1 39 0 1617 279 88 8 chr3 42928272 42928774 -184595804 - MLT1E LTR MaLR -51 542 1 23 33 0 0 chr3 42928774 42928804 -184595774 + AT_rich Low_complexity Low_complexity 1 30 0 206 152 0 22 chr3 42928831 42928877 -184595701 + T-rich Low_complexity Low_complexity 5 49 0 303 319 111 84 chr3 42930403 42930855 -184593723 + L2 LINE L2 2838 3301 -12 216 0 0 0 chr3 42931409 42931433 -184593145 + (T)n Simple_repeat Simple_repeat 1 24 0 1782 188 3 6 chr3 42932107 42932464 -184592114 - L1MA6 LINE L1 -4 6296 5941 312 325 110 32 chr3 42933005 42933251 -184591327 + L1M4 LINE L1 4301 4565 -1581 198 118 0 0 chr3 42933343 42933377 -184591201 + (TG)n Simple_repeat Simple_repeat 1 34 0 63 26 0 0 chr3 42933945 42934022 -184590556 + AT_rich Low_complexity Low_complexity 1 77 0 28 0 0 0 chr3 42934208 42934236 -184590342 + AT_rich Low_complexity Low_complexity 1 28 0 323 260 182 26 chr3 42934290 42934529 -184590049 + L1MC4 LINE L1 7652 7913 -48 7440 32 3 0 chr3 42934642 42935698 -184588880 - L1PA4 LINE L1 0 6155 5099 361 343 16 44 chr3 42935702 42935953 -184588625 + L2 LINE L2 1932 2175 -1139 1888 205 93 39 chr3 42936425 42936888 -184587690 - MLT1D LTR MaLR 0 505 18 3762 156 36 3 chr3 42937002 42937677 -184586901 - L1MC1 LINE L1 -1 6332 5636 335 311 42 48 chr3 42937779 42937946 -184586632 + L2 LINE L2 2636 2801 -513 447 320 112 46 chr3 42938049 42938505 -184586073 - LTR33 LTR ERVL -28 493 8 368 280 70 28 chr3 42938913 42939056 -184585522 - L1ME LINE L1 -465 5656 5508 1430 191 34 4 chr3 42941133 42941400 -184583178 - MER1B DNA MER1_type -64 275 1 317 231 10 67 chr3 42941400 42941504 -184583074 + MER117 DNA MER1_type 58 155 -42 248 265 0 19 chr3 42941599 42941670 -184582908 - MIR SINE MIR -119 89 20 230 278 0 0 chr3 42943683 42943771 -184580807 + (TG)n Simple_repeat Simple_repeat 1 88 0 225 312 8 16 chr3 42943684 42943809 -184580769 + (TA)n Simple_repeat Simple_repeat 1 124 0 * 12974 144 56 9 chr3 42943848 42946157 -184578421 - Tigger1 DNA MER2_type 0 2418 1 26 50 0 0 chr3 42946245 42946285 -184578293 + AT_rich Low_complexity Low_complexity 1 40 0 2749 157 79 63 chr3 42946300 42947137 -184577441 + L1MDa LINE L1 1807 2721 -4000 * 8517 186 106 43 chr3 42947135 42949436 -184575142 + L1MC1 LINE L1 20 2465 -3961 5716 208 31 18 chr3 42949580 42951663 -184572915 + L1MC1 LINE L1 4508 6613 0 21 0 0 0 chr3 42951680 42951701 -184572877 + AT_rich Low_complexity Low_complexity 1 21 0 889 263 98 103 chr3 42951812 42953086 -184571492 + HAL1 LINE L1 794 2059 -448 1825 121 3 60 chr3 42953086 42953401 -184571177 + AluSc SINE Alu 2 298 -11 889 263 98 103 chr3 42953401 42953848 -184570730 + HAL1 LINE L1 2059 2507 0 1288 246 65 6 chr3 42955246 42955567 -184569011 + L1M3e LINE L1 1 340 -6690 2395 272 77 40 chr3 42955577 42958746 -184565832 + L1M3e LINE L1 1075 3973 -3133 1749 206 60 5 chr3 42959310 42959712 -184564866 - MLT1C LTR MaLR -6 461 38 182 259 247 12 chr3 42960064 42960145 -184564433 - MIR SINE MIR -78 130 31 2222 216 62 41 chr3 42960420 42961133 -184563445 + L1M3e LINE L1 4810 5537 -1569 1995 189 41 14 chr3 42961378 42961795 -184562783 + MSTC LTR MaLR 1 428 0 1246 271 42 31 chr3 42961808 42962233 -184562345 + MSTC-int LTR MaLR 15 444 -1207 1286 242 92 3 chr3 42962235 42962594 -184561984 + MSTC-int LTR MaLR 1255 1645 -6 1715 204 41 6 chr3 42962603 42962947 -184561631 + MSTC LTR MaLR 5 360 -68 478 306 82 43 chr3 42964175 42964556 -184560022 + LTR16C LTR ERVL 73 444 -13 647 184 0 9 chr3 42965568 42965677 -184558901 + FLAM_A SINE Alu 11 118 -24 496 100 71 0 chr3 42966457 42966767 -184557811 + (TA)n Simple_repeat Simple_repeat 1 332 0 28 0 0 0 chr3 42967494 42967522 -184557056 + AT_rich Low_complexity Low_complexity 1 28 0 2176 92 11 0 chr3 42968892 42969175 -184555403 + AluSx SINE Alu 1 286 -26 253 210 16 0 chr3 42969202 42969264 -184555314 + GA-rich Low_complexity Low_complexity 2 64 0 1405 249 136 21 chr3 42969863 42970349 -184554229 + MLT1F LTR MaLR 1 542 0 594 303 88 54 chr3 42971228 42971545 -184553033 + MLT2F LTR ERVL 159 486 -177 309 75 0 0 chr3 42971640 42971680 -184552898 + MLT2F LTR ERVL 573 612 -51 1169 238 38 16 chr3 42973756 42974201 -184550377 + L1M4c LINE L1 2234 2689 -3693 12914 141 31 21 chr3 42974259 42976600 -184547978 + Tigger1 DNA MER2_type 55 2418 0 2161 248 84 16 chr3 42976607 42977502 -184547076 + L1M4c LINE L1 2703 3658 -2724 1201 193 26 42 chr3 42977504 42977815 -184546763 + L1M4c LINE L1 3801 4106 -2276 290 122 122 0 chr3 42977812 42977861 -184546717 + L1M4 LINE L1 5523 5577 -607 * 4446 200 6 9 chr3 42977860 42978769 -184545809 - L1 LINE L1 -1602 5963 5058 570 253 34 0 chr3 42978779 42978925 -184545653 - L1 LINE L1 -3571 3994 3844 1985 132 0 30 chr3 42978930 42979233 -184545345 - AluSx SINE Alu -18 294 1 2045 271 57 44 chr3 42979235 42979275 -184545303 - L1 LINE L1 -3857 3708 3670 2171 105 14 0 chr3 42979275 42979571 -184545007 + AluSg SINE Alu 1 300 -10 2045 271 57 44 chr3 42979571 42981178 -184543400 - L1 LINE L1 -3895 3670 2179 * 8551 197 52 6 chr3 42981176 42982794 -184541784 + L1MA2 LINE L1 472 2163 -5402 * 10263 187 13 10 chr3 42982792 42984865 -184539713 + L1MA2 LINE L1 4027 6106 -1459 7426 124 4 1 chr3 42984885 42986181 -184538397 + L1MA2 LINE L1 6424 7723 0 1718 289 31 20 chr3 42986213 42986760 -184537818 - L1 LINE L1 -5720 1776 1224 2791 232 57 52 chr3 42986812 42987793 -184536785 - L1M4 LINE L1 -946 5200 4215 195 366 27 18 chr3 42987820 42987932 -184536646 - L2 LINE L2 -2072 1242 1130 257 0 30 0 chr3 42988777 42988810 -184535768 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 305 296 318 0 chr3 42989113 42989289 -184535289 - MIR SINE MIR -1 261 30 1142 94 6 11 chr3 42989485 42989665 -184534913 - L1PA8 LINE L1 0 6172 5994 5734 68 9 0 chr3 42989665 42990655 -184533923 + L1PA8 LINE L1 4992 5989 -183 428 328 78 10 chr3 42991263 42991455 -184533123 + MIR SINE MIR 1 205 -57 552 263 64 95 chr3 42991843 42992295 -184532283 - L1ME3A LINE L1 -1 6169 5732 701 291 94 40 chr3 42992296 42992870 -184531708 + L1M4 LINE L1 2853 3457 -2689 23 54 0 0 chr3 42993536 42993573 -184531005 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr3 42994237 42994257 -184530321 + (GAA)n Simple_repeat Simple_repeat 2 21 0 557 267 17 40 chr3 42995035 42995211 -184529367 - MLT1H1 LTR MaLR -24 531 360 198 103 0 0 chr3 42995232 42995261 -184529317 + (TC)n Simple_repeat Simple_repeat 2 30 0 713 265 69 87 chr3 42995723 42995837 -184528741 + HAL1 LINE L1 988 1103 -1404 6834 35 2 7 chr3 42995837 42996672 -184527906 + L1PA5 LINE L1 5323 6153 -1 713 265 69 87 chr3 42996672 42996994 -184527584 + HAL1 LINE L1 1103 1416 -1091 343 262 7 55 chr3 42997026 42997171 -184527407 + HAL1 LINE L1 1509 1646 -861 213 283 0 0 chr3 42998331 42998384 -184526194 + (TG)n Simple_repeat Simple_repeat 1 53 0 1259 281 99 22 chr3 42998677 42999182 -184525396 - MLT1H LTR MaLR 0 549 6 302 306 0 9 chr3 42999423 42999531 -184525047 - MIR SINE MIR -57 205 99 210 343 0 0 chr3 43000395 43000462 -184524116 - L2 LINE L2 -219 3053 2987 292 250 16 0 chr3 43001056 43001120 -184523458 - MIR SINE MIR -62 146 82 286 309 154 0 chr3 43001956 43002079 -184522499 - MIR3 SINE MIR -22 186 45 180 0 0 0 chr3 43002468 43002488 -184522090 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1684 58 0 98 chr3 43002539 43002813 -184521765 - L1PA8 LINE L1 -2 6170 5924 229 219 0 78 chr3 43003211 43003275 -184521303 + MIR SINE MIR 110 168 -94 653 274 159 77 chr3 43003386 43003827 -184520751 - MLT1H LTR MaLR 0 549 73 279 0 0 0 chr3 43005100 43005131 -184519447 + (TG)n Simple_repeat Simple_repeat 2 32 0 285 269 19 19 chr3 43005232 43005336 -184519242 + MIR SINE MIR 158 261 -1 288 278 14 0 chr3 43005558 43005630 -184518948 + MIR SINE MIR 180 252 -10 763 163 126 42 chr3 43005820 43006010 -184518568 + L1PB3 LINE L1 5946 6151 -3 783 286 66 66 chr3 43006136 43006514 -184518064 + LTR16A LTR ERVL 64 441 -9 2136 107 0 3 chr3 43006805 43007095 -184517483 - AluSx SINE Alu -19 293 5 26 30 0 0 chr3 43007354 43007387 -184517191 + AT_rich Low_complexity Low_complexity 1 33 0 28 0 0 0 chr3 43007661 43007689 -184516889 + AT_rich Low_complexity Low_complexity 1 28 0 197 132 26 0 chr3 43007914 43007952 -184516626 + (TCTA)n Simple_repeat Simple_repeat 2 40 0 359 273 131 33 chr3 43007954 43008343 -184516235 - L1M4 LINE L1 -3127 3019 2593 340 328 60 22 chr3 43008551 43008734 -184515844 - MER117 DNA MER1_type -6 191 2 591 259 170 25 chr3 43008770 43009052 -184515526 + HAL1b LINE L1 451 773 -575 320 308 0 25 chr3 43009678 43009798 -184514780 + HAL1b LINE L1 839 955 -393 224 268 207 0 chr3 43010223 43010305 -184514273 - L2 LINE L2 -18 3295 3197 38 22 0 0 chr3 43010822 43010867 -184513711 + AT_rich Low_complexity Low_complexity 1 45 0 6207 51 0 0 chr3 43011715 43012500 -184512078 - L1PA4 LINE L1 -4141 2005 1221 27178 38 1 1 chr3 43012500 43016636 -184507942 + L1PA4 LINE L1 2021 6155 0 248 260 83 10 chr3 43016747 43016843 -184507735 + MST-int LTR MaLR 1327 1429 -222 1928 138 0 34 chr3 43017027 43017347 -184507231 + AluSc SINE Alu 1 309 0 745 232 89 12 chr3 43017465 43017711 -184506867 - Zaphod DNA AcHobo -172 3859 3595 * 1610 260 118 48 chr3 43017708 43018029 -184506549 - Zaphod DNA AcHobo -3040 991 694 767 167 58 0 chr3 43018029 43018203 -184506375 + MER53 DNA DNA 4 187 -2 1610 260 118 48 chr3 43018203 43018793 -184505785 - Zaphod DNA AcHobo -3337 694 16 321 227 11 23 chr3 43018860 43018948 -184505630 + MLT1J2 LTR MaLR 72 158 -292 22 35 0 0 chr3 43019293 43019322 -184505256 + AT_rich Low_complexity Low_complexity 1 29 0 1438 272 70 33 chr3 43019460 43019916 -184504662 - MLT1D LTR MaLR -6 499 27 245 197 26 53 chr3 43020423 43020499 -184504079 - L1ME LINE L1 -364 5757 5684 461 254 44 44 chr3 43020573 43020821 -184503757 + L1MEc LINE L1 1956 2203 -4193 1076 171 0 5 chr3 43020990 43021177 -184503401 + L1PA13 LINE L1 4788 4973 -1173 2014 173 52 32 chr3 43021179 43021709 -184502869 + MLT2A2 LTR ERVL 1 550 -4 5214 117 61 3 chr3 43021709 43021767 -184502811 + L1PA13 LINE L1 4968 5021 -1142 2246 79 0 26 chr3 43021767 43022072 -184502506 + AluY SINE Alu 1 297 -14 5214 117 61 3 chr3 43022072 43023164 -184501414 + L1PA13 LINE L1 5021 6161 -2 1113 243 66 6 chr3 43023167 43023517 -184501061 + L1MEc LINE L1 2465 2835 -3380 21 0 0 0 chr3 43024337 43024358 -184500220 + AT_rich Low_complexity Low_complexity 1 21 0 5521 134 33 3 chr3 43024360 43025369 -184499209 - L1PA15 LINE L1 -2 6163 5124 302 303 96 23 chr3 43025504 43025694 -184498884 + L1ME2 LINE L1 5708 5910 -256 1636 213 20 17 chr3 43026300 43026652 -184497926 - MLT1A1 LTR MaLR 0 365 13 276 30 0 0 chr3 43027265 43027298 -184497280 + (CA)n Simple_repeat Simple_repeat 1 33 0 2540 147 33 9 chr3 43027298 43027748 -184496830 - L1PB3 LINE L1 -9 6145 5685 2488 62 3 3 chr3 43027867 43028176 -184496402 - AluY SINE Alu 0 311 3 33 43 0 0 chr3 43029083 43029130 -184495448 + AT_rich Low_complexity Low_complexity 1 47 0 1593 275 59 32 chr3 43029946 43030695 -184493883 + L1ME LINE L1 140 908 -5162 202 137 55 14 chr3 43030838 43030911 -184493667 + (TA)n Simple_repeat Simple_repeat 2 77 0 298 192 64 29 chr3 43030951 43031123 -184493455 + (TA)n Simple_repeat Simple_repeat 1 178 0 338 178 66 26 chr3 43031218 43031370 -184493208 + (TA)n Simple_repeat Simple_repeat 2 159 0 1249 205 13 8 chr3 43031546 43031780 -184492798 + AluJb SINE Alu 1 235 -77 240 180 166 65 chr3 43032618 43032757 -184491821 + L1ME LINE L1 877 1029 -5041 375 106 0 0 chr3 43032940 43033006 -184491572 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 225 0 0 0 chr3 43033023 43033048 -184491530 + (TTG)n Simple_repeat Simple_repeat 3 27 0 1816 117 36 0 chr3 43033048 43033295 -184491283 - AluSx SINE Alu -53 259 4 639 279 102 95 chr3 43033403 43033453 -184491125 + L1ME LINE L1 2224 2272 -3808 2026 149 21 6 chr3 43033453 43033782 -184490796 + MER1B DNA MER1_type 4 337 0 639 279 102 95 chr3 43033782 43034505 -184490073 + L1ME LINE L1 2272 3006 -3074 430 209 157 52 chr3 43034505 43034620 -184489958 + FLAM_A SINE Alu 1 127 -6 639 279 102 95 chr3 43034620 43034732 -184489846 + L1ME LINE L1 3006 3116 -2964 263 299 50 40 chr3 43034870 43035171 -184489407 + L1M4 LINE L1 4477 4780 -1366 290 255 104 28 chr3 43035223 43035329 -184489249 - MIR3 SINE MIR -82 126 13 621 288 38 95 chr3 43035371 43035780 -184488798 - MLT1I LTR MaLR -2 407 25 378 0 0 0 chr3 43037093 43037135 -184487443 + (CA)n Simple_repeat Simple_repeat 2 43 0 314 251 123 112 chr3 43041320 43041687 -184482891 - L1M2 LINE L1 -5752 1097 727 215 273 0 0 chr3 43042001 43042056 -184482522 + (CGGA)n Simple_repeat Simple_repeat 1 55 0 199 155 14 28 chr3 43042270 43042341 -184482237 + A-rich Low_complexity Low_complexity 1 70 0 21 0 0 0 chr3 43047101 43047122 -184477456 + AT_rich Low_complexity Low_complexity 1 21 0 202 244 61 37 chr3 43049736 43049818 -184474760 + MIR SINE MIR 48 131 -131 423 271 65 0 chr3 43049842 43049949 -184474629 + MIR SINE MIR 59 172 -90 208 289 19 0 chr3 43051143 43051195 -184473383 + L2 LINE L2 3215 3267 -5 228 307 27 13 chr3 43053396 43053471 -184471107 + MIR3 SINE MIR 130 205 -3 342 236 163 24 chr3 43053608 43053731 -184470847 + MIR SINE MIR 8 147 -115 26 30 0 0 chr3 43056949 43056982 -184467596 + AT_rich Low_complexity Low_complexity 1 33 0 180 200 0 0 chr3 43057280 43057330 -184467248 + (TA)n Simple_repeat Simple_repeat 2 51 0 659 210 138 6 chr3 43057846 43058013 -184466565 - MER5A DNA MER1_type 0 189 1 26 30 0 0 chr3 43058140 43058173 -184466405 + AT_rich Low_complexity Low_complexity 1 33 0 1564 261 76 0 chr3 43058388 43058833 -184465745 + L1MD2 LINE L1 5655 6133 -226 181 277 161 66 chr3 43059257 43059394 -184465184 - L3 LINE CR1 -48 1529 1380 766 283 72 9 chr3 43059530 43059753 -184464825 - MIR SINE MIR -2 260 24 263 191 15 15 chr3 43061221 43061289 -184463289 + MER112 DNA MER1_type 13 80 -180 28 61 0 0 chr3 43061388 43061437 -184463141 + AT_rich Low_complexity Low_complexity 1 49 0 277 356 40 0 chr3 43061512 43061613 -184462965 - L2 LINE L2 -15 3257 3153 387 276 64 26 chr3 43063801 43063957 -184460621 + MIR SINE MIR 68 229 -33 1039 253 34 48 chr3 43064459 43064811 -184459767 - LTR16A LTR ERVL 0 450 104 1419 175 168 34 chr3 43064817 43065196 -184459382 + L1MA4A LINE L1 5855 6279 -24 1839 119 62 12 chr3 43066218 43066538 -184458040 - L1MA6 LINE L1 0 6300 5965 208 297 109 20 chr3 43069075 43069176 -184455402 + MIR SINE MIR 33 142 -120 1319 62 5 5 chr3 43069897 43070107 -184454471 + (GAA)n Simple_repeat Simple_repeat 1 210 0 28 0 0 0 chr3 43070275 43070303 -184454275 + AT_rich Low_complexity Low_complexity 1 28 0 330 87 0 0 chr3 43071175 43071221 -184453357 + (TTCC)n Simple_repeat Simple_repeat 4 49 0 434 244 102 31 chr3 43074621 43074748 -184449830 - L2 LINE L2 0 3313 3178 372 22 0 0 chr3 43077846 43077891 -184446687 + (ATG)n Simple_repeat Simple_repeat 2 46 0 200 259 37 0 chr3 43078156 43078210 -184446368 + L2 LINE L2 3257 3312 -1 234 62 0 0 chr3 43079327 43079359 -184445219 + (CA)n Simple_repeat Simple_repeat 2 33 0 305 184 10 31 chr3 43082755 43082853 -184441725 + CT-rich Low_complexity Low_complexity 5 100 0 192 77 0 0 chr3 43084806 43084832 -184439746 + (TC)n Simple_repeat Simple_repeat 1 26 0 213 94 0 0 chr3 43084858 43084890 -184439688 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 22 0 0 0 chr3 43085301 43085323 -184439255 + AT_rich Low_complexity Low_complexity 1 22 0 198 143 0 0 chr3 43085734 43085769 -184438809 + (TTTCC)n Simple_repeat Simple_repeat 1 35 0 25 31 0 0 chr3 43086490 43086522 -184438056 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 43087902 43087923 -184436655 + AT_rich Low_complexity Low_complexity 1 21 0 43 20 0 0 chr3 43089074 43089124 -184435454 + AT_rich Low_complexity Low_complexity 1 50 0 180 0 0 0 chr3 43090635 43090655 -184433923 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 214 114 23 23 chr3 43091947 43091991 -184432587 + (AAATG)n Simple_repeat Simple_repeat 1 44 0 468 286 60 30 chr3 43093484 43093652 -184430926 + MIR3 SINE MIR 15 187 -21 267 322 132 26 chr3 43094095 43094247 -184430331 + MIR3 SINE MIR 16 183 -25 435 205 195 70 chr3 43094784 43094969 -184429609 - MER3 DNA MER1_type 0 209 2 200 271 52 21 chr3 43096510 43096606 -184427972 - MIR SINE MIR -62 200 102 320 111 49 0 chr3 43096942 43097023 -184427555 + (TA)n Simple_repeat Simple_repeat 1 85 0 22 56 0 0 chr3 43097026 43097062 -184427516 + AT_rich Low_complexity Low_complexity 1 36 0 339 324 92 42 chr3 43097822 43098060 -184426518 - MIR SINE MIR -11 251 2 202 267 0 17 chr3 43101138 43101198 -184423380 + (TG)n Simple_repeat Simple_repeat 2 60 0 371 242 76 86 chr3 43102120 43102318 -184422260 - MIR SINE MIR -8 254 59 250 73 0 0 chr3 43102886 43102927 -184421651 - L1PA6 LINE L1 0 6154 6114 * 1120 93 0 0 chr3 43102918 43103069 -184421509 + L1PA6 LINE L1 5981 6131 -23 336 287 28 46 chr3 43106827 43106935 -184417643 - L2 LINE L2 -18 3295 3190 198 71 0 0 chr3 43112566 43112594 -184411984 + (TC)n Simple_repeat Simple_repeat 1 28 0 405 0 0 0 chr3 43112596 43112641 -184411937 + (CA)n Simple_repeat Simple_repeat 2 46 0 2061 213 45 62 chr3 43113540 43114075 -184410503 - MLT1F LTR MaLR 0 542 17 513 110 0 0 chr3 43114563 43114654 -184409924 + (TG)n Simple_repeat Simple_repeat 1 91 0 24 67 0 0 chr3 43115273 43115318 -184409260 + AT_rich Low_complexity Low_complexity 1 45 0 1735 161 21 0 chr3 43115453 43115739 -184408839 - AluJb SINE Alu -12 300 9 208 311 0 33 chr3 43117588 43117678 -184406900 + (TA)n Simple_repeat Simple_repeat 2 88 0 238 211 0 19 chr3 43119094 43119146 -184405432 + CT-rich Low_complexity Low_complexity 4 54 0 213 288 15 30 chr3 43119952 43120018 -184404560 + L2 LINE L2 3184 3248 -65 348 219 17 76 chr3 43124042 43124161 -184400417 + MIR SINE MIR 67 178 -84 651 315 0 6 chr3 43124393 43124574 -184400004 + MIR SINE MIR 83 262 0 941 191 16 6 chr3 43126487 43126670 -184397908 - MER5A DNA MER1_type -4 185 1 1829 239 58 8 chr3 43127003 43127488 -184397090 - MER67D LTR ERV1 0 514 6 388 301 49 8 chr3 43127502 43127625 -184396953 - MIR3 SINE MIR -45 163 36 218 231 0 55 chr3 43127703 43127794 -184396784 + T-rich Low_complexity Low_complexity 2 87 0 360 325 197 0 chr3 43128012 43128215 -184396363 + MIR SINE MIR 16 258 -4 364 279 90 58 chr3 43129303 43129481 -184395097 + MIR SINE MIR 2 188 -20 333 0 0 0 chr3 43130206 43130243 -184394335 + (TAA)n Simple_repeat Simple_repeat 1 37 0 2364 83 7 3 chr3 43130269 43130571 -184394007 - AluSg SINE Alu -7 303 1 915 224 9 36 chr3 43132366 43132585 -184391993 + MER20 DNA MER1_type 7 219 0 199 214 29 19 chr3 43133628 43133731 -184390847 + (TATATG)n Simple_repeat Simple_repeat 4 107 0 198 208 0 0 chr3 43136125 43136173 -184388405 + (TG)n Simple_repeat Simple_repeat 1 48 0 251 328 33 8 chr3 43136891 43137013 -184387565 - L1ME3 LINE L1 -35 6127 6003 309 252 13 113 chr3 43137107 43137173 -184387405 - HAL1 LINE L1 -1556 951 907 1750 169 28 3 chr3 43137173 43137463 -184387115 - AluJo SINE Alu -12 300 4 309 252 13 113 chr3 43137463 43137547 -184387031 - HAL1 LINE L1 -1600 907 816 185 351 0 0 chr3 43138050 43138107 -184386471 + MIR SINE MIR 61 117 -91 * 438 343 74 9 chr3 43138104 43138320 -184386258 + MIR SINE MIR 7 236 -26 236 240 27 27 chr3 43138420 43138495 -184386083 + MIR SINE MIR 117 191 -71 21 0 0 0 chr3 43141228 43141249 -184383329 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr3 43142841 43142864 -184381714 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1504 223 0 14 chr3 43142869 43143161 -184381417 + AluJb SINE Alu 1 288 -24 332 218 113 57 chr3 43145375 43145499 -184379079 - MLT1H LTR MaLR -60 535 405 584 282 101 18 chr3 43145529 43145806 -184378772 - MLT1H LTR MaLR -249 300 1 2207 96 0 32 chr3 43149122 43149435 -184375143 + AluSx SINE Alu 1 303 -9 268 208 0 15 chr3 43149686 43149753 -184374825 + AluSc SINE Alu 131 175 -124 728 178 16 0 chr3 43149864 43149993 -184374585 + AluJb SINE Alu 182 308 -302 929 93 11 33 chr3 43149993 43150065 -184374513 + (GAAA)n Simple_repeat Simple_repeat 1 249 0 929 93 11 33 chr3 43150065 43150248 -184374330 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 728 178 16 0 chr3 43150248 43150291 -184374287 + AluJb SINE Alu 308 610 0 288 351 79 12 chr3 43150900 43151065 -184373513 - MIR SINE MIR -74 188 13 3140 238 20 45 chr3 43151566 43152719 -184371859 - L1M4 LINE L1 -2475 3671 2548 384 223 254 0 chr3 43154649 43154779 -184369799 - MER5A DNA MER1_type 0 189 27 306 0 0 0 chr3 43155095 43155129 -184369449 + (TG)n Simple_repeat Simple_repeat 2 35 0 2253 102 0 0 chr3 43155931 43156224 -184368354 + AluSg SINE Alu 6 298 -12 202 338 50 29 chr3 43156241 43156380 -184368198 + MIR SINE MIR 118 259 -3 22 35 0 0 chr3 43158327 43158356 -184366222 + AT_rich Low_complexity Low_complexity 1 29 0 203 0 37 0 chr3 43159624 43159651 -184364927 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1430 172 69 48 chr3 43159993 43160284 -184364294 - AluJo SINE Alu -13 299 3 570 245 75 0 chr3 43160803 43161003 -184363575 + L1M4 LINE L1 4187 4401 -1745 228 232 18 0 chr3 43161783 43161839 -184362739 + (TG)n Simple_repeat Simple_repeat 1 57 0 215 255 0 0 chr3 43162548 43162599 -184361979 + T-rich Low_complexity Low_complexity 1 51 0 285 29 0 0 chr3 43162600 43162634 -184361944 + (TG)n Simple_repeat Simple_repeat 1 34 0 527 270 0 0 chr3 43162635 43162750 -184361828 - MLT1B LTR MaLR -49 341 227 230 216 40 54 chr3 43164779 43164853 -184359725 - L2 LINE L2 0 3313 3241 338 0 24 0 chr3 43165009 43165051 -184359527 + (TC)n Simple_repeat Simple_repeat 1 43 0 207 0 0 0 chr3 43165050 43165073 -184359505 + (CA)n Simple_repeat Simple_repeat 1 23 0 * 874 114 8 8 chr3 43166886 43167017 -184357561 + AluJb SINE Alu 1 131 -181 531 295 143 5 chr3 43168778 43169002 -184355576 + MIR SINE MIR 6 260 -2 189 0 0 0 chr3 43169837 43169858 -184354720 + (TG)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chr3 43170452 43170473 -184354105 + AT_rich Low_complexity Low_complexity 1 21 0 540 0 0 0 chr3 43171086 43171146 -184353432 + (TG)n Simple_repeat Simple_repeat 2 61 0 219 146 0 0 chr3 43172033 43172074 -184352504 + (TC)n Simple_repeat Simple_repeat 2 42 0 188 196 0 36 chr3 43172073 43172129 -184352449 + (TATATG)n Simple_repeat Simple_repeat 1 54 0 * 1504 224 87 9 chr3 43172172 43172709 -184351869 + LTR65 LTR ERV1 2 668 -1 203 321 151 0 chr3 43173975 43174081 -184350497 - MIR3 SINE MIR -6 202 81 2209 113 0 0 chr3 43174340 43174633 -184349945 - AluSx SINE Alu -17 295 3 200 309 41 93 chr3 43174662 43174759 -184349819 - L2 LINE L2 -3 3269 3178 392 256 0 115 chr3 43175334 43175490 -184349088 - MIR3 SINE MIR -8 200 63 343 258 74 74 chr3 43176238 43176401 -184348177 - MIR SINE MIR -18 244 82 21 0 0 0 chr3 43176757 43176778 -184347800 + AT_rich Low_complexity Low_complexity 1 21 0 693 159 0 0 chr3 43177144 43177251 -184347327 + FLAM_A SINE Alu 3 109 -33 207 276 0 0 chr3 43178418 43178494 -184346084 + (TATATG)n Simple_repeat Simple_repeat 4 79 0 238 333 0 0 chr3 43178497 43178587 -184345991 + MER94 DNA DNA 5 94 -40 23 33 0 0 chr3 43178689 43178719 -184345859 + AT_rich Low_complexity Low_complexity 1 30 0 293 312 40 27 chr3 43180276 43180442 -184344136 - MIR SINE MIR -34 228 62 466 267 148 49 chr3 43181295 43181640 -184342938 + LTR33 LTR ERVL 76 454 -67 366 357 56 0 chr3 43181703 43181829 -184342749 + MIR SINE MIR 39 171 -91 211 340 0 80 chr3 43182408 43182508 -184342070 + MIR SINE MIR 35 126 -82 187 214 24 0 chr3 43183485 43183527 -184341051 - MIR SINE MIR -111 151 109 754 224 5 41 chr3 43183651 43183847 -184340731 + MER5A DNA MER1_type 1 189 0 523 245 107 36 chr3 43187268 43187464 -184337114 - MER63A DNA MER1_type 0 210 1 279 0 0 0 chr3 43188515 43188546 -184336032 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 2230 110 0 20 chr3 43189247 43189548 -184335030 + AluSc SINE Alu 1 295 -14 191 288 17 51 chr3 43190109 43190168 -184334410 - L3 LINE CR1 -12 1565 1509 492 289 138 22 chr3 43190836 43191061 -184333517 + MIR SINE MIR 1 251 -11 21 0 0 0 chr3 43192791 43192812 -184331766 + AT_rich Low_complexity Low_complexity 1 21 0 539 324 80 25 chr3 43196408 43196646 -184327932 - MIR SINE MIR -6 256 6 1622 139 139 67 chr3 43199007 43199352 -184325226 - MSTB1 LTR MaLR 0 432 52 2122 102 0 44 chr3 43199352 43199667 -184324911 - AluSp SINE Alu -12 301 1 1622 139 139 67 chr3 43199667 43199724 -184324854 - MSTB1 LTR MaLR -380 52 1 1791 149 66 30 chr3 43200582 43200944 -184323634 - THE1C LTR MaLR 0 375 1 25 51 0 0 chr3 43201136 43201175 -184323403 + AT_rich Low_complexity Low_complexity 1 39 0 25 31 0 0 chr3 43201897 43201929 -184322649 + AT_rich Low_complexity Low_complexity 1 32 0 4401 181 95 39 chr3 43204155 43205105 -184319473 - MER52A LTR ERV1 0 1755 753 505 231 87 92 chr3 43205104 43205299 -184319279 - MER52A LTR ERV1 -1560 195 2 * 190 378 0 9 chr3 43205483 43205594 -184318984 + L3b LINE CR1 1319 1428 -155 245 240 0 0 chr3 43205918 43205968 -184318610 + (CA)n Simple_repeat Simple_repeat 1 50 0 26 30 0 0 chr3 43206000 43206033 -184318545 + AT_rich Low_complexity Low_complexity 1 33 0 222 286 26 13 chr3 43206261 43206338 -184318240 + MIR SINE MIR 76 153 -109 228 333 81 11 chr3 43206957 43207044 -184317534 + L3b LINE CR1 1476 1568 -15 24 0 0 0 chr3 43207260 43207284 -184317294 + AT_rich Low_complexity Low_complexity 1 24 0 1959 275 67 40 chr3 43208179 43209349 -184315229 + L1ME3A LINE L1 4955 6153 -17 278 281 35 18 chr3 43210029 43210143 -184314435 - MLT1I LTR MaLR 0 409 294 1388 253 48 61 chr3 43210266 43210302 -184314276 - HERV16 LTR ERVL -2605 2391 2356 2004 119 0 60 chr3 43210302 43210620 -184313958 + AluSq SINE Alu 1 299 -14 1388 253 48 61 chr3 43210620 43211104 -184313474 - HERV16 LTR ERVL -2640 2356 1878 1832 213 71 26 chr3 43211104 43211526 -184313052 + MLT2B1 LTR ERVL 1 441 -79 2209 156 0 0 chr3 43211552 43211891 -184312687 + MER7A DNA MER2_type 1 337 -9 241 184 0 0 chr3 43211901 43211950 -184312628 + MLT2B1 LTR ERVL 472 520 0 998 322 31 29 chr3 43211954 43212681 -184311897 - HERV16 LTR ERVL -3213 1783 1059 24 32 0 0 chr3 43213033 43213064 -184311514 + AT_rich Low_complexity Low_complexity 1 31 0 528 283 53 89 chr3 43213178 43213785 -184310793 + L1ME3A LINE L1 3652 4236 -1910 23 33 0 0 chr3 43213804 43213834 -184310744 + AT_rich Low_complexity Low_complexity 1 30 0 293 283 83 20 chr3 43214260 43214640 -184309938 + L1ME3A LINE L1 4944 5354 -805 440 278 97 27 chr3 43215026 43215285 -184309293 + L1ME3A LINE L1 5692 5968 -202 207 0 0 0 chr3 43215865 43215888 -184308690 + (TG)n Simple_repeat Simple_repeat 1 23 0 524 311 109 48 chr3 43216618 43216702 -184307876 + L1ME LINE L1 652 729 -5351 1951 148 7 0 chr3 43216702 43217005 -184307573 + AluSx SINE Alu 1 305 -7 524 311 109 48 chr3 43217005 43217431 -184307147 + L1ME LINE L1 729 1178 -4902 300 27 0 0 chr3 43217433 43217470 -184307108 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1105 276 122 22 chr3 43217511 43217920 -184306658 - MLT1H LTR MaLR -97 452 3 294 151 0 139 chr3 43218612 43218652 -184305926 - MER5A DNA MER1_type -83 106 83 3476 70 18 0 chr3 43218652 43219109 -184305469 - L1PA8 LINE L1 0 6172 5708 294 151 0 139 chr3 43219109 43219154 -184305424 - MER5A DNA MER1_type -106 83 33 878 222 11 0 chr3 43219472 43219648 -184304930 + MER45A DNA AcHobo 1 178 0 435 52 0 0 chr3 43219968 43220026 -184304552 + (TG)n Simple_repeat Simple_repeat 2 59 0 717 149 9 0 chr3 43220026 43220140 -184304438 - AluJb SINE Alu -197 115 1 717 222 54 10 chr3 43221438 43221641 -184302937 - L1MC3 LINE L1 -21 7764 7553 42410 40 22 5 chr3 43221658 43227762 -184296816 - L1PA2 LINE L1 0 6172 1 2045 185 32 46 chr3 43227763 43228260 -184296318 - L1MC3 LINE L1 -202 7583 7094 * 4168 254 27 19 chr3 43228259 43229642 -184294936 - L1M4 LINE L1 -1293 4853 3460 589 214 83 128 chr3 43229650 43230048 -184294530 + MLT1B LTR MaLR 11 390 0 714 242 35 23 chr3 43230077 43230424 -184294154 - L1M4 LINE L1 -2712 3434 3084 737 265 22 13 chr3 43230455 43230685 -184293893 - L1MCb LINE L1 -5810 235 4 3056 59 15 12 chr3 43230784 43231192 -184293386 + L1PA7 LINE L1 5744 6152 -2 281 325 66 58 chr3 43231281 43231739 -184292839 - L2 LINE L2 -122 3191 2728 218 333 12 0 chr3 43232025 43232109 -184292469 + CT-rich Low_complexity Low_complexity 2 86 0 252 314 138 44 chr3 43232233 43232392 -184292186 + L2 LINE L2 2869 3042 -230 202 217 22 0 chr3 43233001 43233047 -184291531 + (TG)n Simple_repeat Simple_repeat 1 47 0 456 19 0 0 chr3 43233151 43233204 -184291374 + (TC)n Simple_repeat Simple_repeat 1 53 0 204 40 0 0 chr3 43233579 43233604 -184290974 + (TAG)n Simple_repeat Simple_repeat 2 26 0 399 307 49 25 chr3 43233615 43233778 -184290800 - MIR SINE MIR -12 250 84 206 73 0 49 chr3 43233882 43233923 -184290655 + (TA)n Simple_repeat Simple_repeat 2 40 0 269 277 45 27 chr3 43234684 43234796 -184289782 + MIR SINE MIR 120 233 -29 280 360 142 20 chr3 43234948 43235201 -184289377 + L2 LINE L2 2988 3271 -1 416 255 51 112 chr3 43235785 43236079 -184288499 - HAL1 LINE L1 -2231 276 1 821 266 36 58 chr3 43236561 43236985 -184287593 - LTR38B LTR ERV1 -26 584 149 195 42 0 0 chr3 43237369 43237393 -184287185 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 426 85 0 0 chr3 43238122 43238181 -184286397 + (TCC)n Simple_repeat Simple_repeat 2 60 0 13781 146 37 6 chr3 43238898 43241220 -184283358 - Tigger1 DNA MER2_type -1 2417 24 270 56 0 0 chr3 43241255 43241291 -184283287 + (TG)n Simple_repeat Simple_repeat 1 36 0 279 0 0 0 chr3 43241829 43241860 -184282718 + (TG)n Simple_repeat Simple_repeat 1 31 0 * 618 49 0 0 chr3 43241859 43241941 -184282637 + (GA)n Simple_repeat Simple_repeat 1 82 0 190 194 0 0 chr3 43243151 43243187 -184281391 - L2 LINE L2 -94 3219 3184 258 355 77 0 chr3 43243375 43243530 -184281048 - L2 LINE L2 -929 2385 2219 1493 179 97 45 chr3 43243864 43243913 -184280665 + LTR52 LTR ERVL 1 46 -375 339 0 0 0 chr3 43243913 43243955 -184280623 - L1PA3 LINE L1 -3 6152 6111 1493 179 97 45 chr3 43243955 43244285 -184280293 + LTR52 LTR ERVL 46 400 -21 462 326 77 29 chr3 43245622 43245935 -184278643 - L2 LINE L2 -548 2766 2439 246 62 0 0 chr3 43245965 43245997 -184278581 + (GA)n Simple_repeat Simple_repeat 2 33 0 447 321 66 10 chr3 43246024 43246220 -184278358 - MIR SINE MIR 0 262 56 328 286 0 0 chr3 43246797 43246867 -184277711 + MER91A DNA MER1_type 34 103 -93 263 307 50 20 chr3 43246915 43247016 -184277562 + MER91A DNA MER1_type 90 193 -3 576 215 31 110 chr3 43248476 43248667 -184275911 - MER58A DNA MER1_type -4 220 45 4200 194 57 36 chr3 43248852 43249225 -184275353 - L1MD2 LINE L1 -79 6280 5917 1720 200 13 25 chr3 43249225 43249620 -184274958 - MLT1B LTR MaLR 0 390 1 4200 194 57 36 chr3 43249620 43250533 -184274045 - L1MD2 LINE L1 -442 5917 4975 1325 281 65 49 chr3 43250561 43251998 -184272580 - L1ME LINE L1 -4147 2114 479 1980 157 0 0 chr3 43251998 43252292 -184272286 - AluSx SINE Alu -18 294 1 1325 281 65 49 chr3 43252292 43252459 -184272119 - L1ME LINE L1 -5782 479 316 317 354 32 6 chr3 43252527 43252685 -184271893 - L1ME LINE L1 -5668 310 149 286 240 10 31 chr3 43253120 43253216 -184271362 - L1ME LINE L1 -5929 141 48 203 264 23 11 chr3 43253522 43253609 -184270969 + CT-rich Low_complexity Low_complexity 3 90 0 3245 194 32 37 chr3 43254552 43255339 -184269239 + L1MB1 LINE L1 5386 6168 0 1253 272 83 41 chr3 43255349 43256205 -184268373 - L1M4 LINE L1 -3699 2683 1684 4702 109 27 0 chr3 43256205 43256909 -184267669 - L1PA11 LINE L1 0 6174 5452 1253 272 83 41 chr3 43256909 43257229 -184267349 - L1M4 LINE L1 -4698 1684 1379 2488 209 19 13 chr3 43257229 43257751 -184266827 - Tigger1 DNA MER2_type -1892 526 2 1921 231 117 45 chr3 43257751 43258391 -184266187 - L1MDb LINE L1 -4402 2138 1545 185 0 40 0 chr3 43258391 43258416 -184266162 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1921 231 117 45 chr3 43258416 43258943 -184265635 - L1MDb LINE L1 -4995 1545 917 246 105 0 0 chr3 43259087 43259125 -184265453 + (CTG)n Simple_repeat Simple_repeat 1 38 0 695 232 72 65 chr3 43259350 43259613 -184264965 - L1MDb LINE L1 -6260 280 16 978 305 68 65 chr3 43259645 43260779 -184263799 + L2 LINE L2 2186 3313 0 21 0 0 0 chr3 43261367 43261388 -184263190 + AT_rich Low_complexity Low_complexity 1 21 0 251 328 69 23 chr3 43262135 43262266 -184262312 + L2 LINE L2 3174 3310 -3 867 308 86 55 chr3 43263330 43264055 -184260523 + L1ME LINE L1 4623 5369 -777 983 42 0 0 chr3 43264420 43264538 -184260040 + L1PA3 LINE L1 6033 6150 -5 22 56 0 0 chr3 43265216 43265252 -184259326 + AT_rich Low_complexity Low_complexity 1 36 0 450 294 60 35 chr3 43265642 43265843 -184258735 + MIR SINE MIR 47 252 -10 2115 134 3 0 chr3 43266217 43266524 -184258054 - AluSx SINE Alu -4 308 1 2033 106 23 36 chr3 43267492 43268044 -184256534 + MER51A LTR ERV1 1 634 0 2269 108 0 3 chr3 43268540 43268845 -184255733 + AluSg SINE Alu 1 304 -6 1354 198 44 0 chr3 43269041 43269339 -184255239 + L1MB4 LINE L1 5869 6179 -1 2836 152 13 4 chr3 43271408 43271861 -184252717 + LTR32 LTR ERVL 15 471 0 352 226 86 0 chr3 43271861 43271954 -184252624 + L1ME3A LINE L1 6070 6170 0 312 313 39 53 chr3 43271982 43272226 -184252352 + L1ME LINE L1 5440 5641 -480 234 81 0 0 chr3 43272961 43272998 -184251580 + (TTTTTG)n Simple_repeat Simple_repeat 6 42 0 181 269 75 15 chr3 43273858 43273880 -184250698 - MER5A DNA MER1_type -6 183 164 234 0 0 0 chr3 43273880 43273906 -184250672 + (CAG)n Simple_repeat Simple_repeat 1 26 0 181 269 75 15 chr3 43273906 43273950 -184250628 - MER5A DNA MER1_type -25 164 113 * 272 246 246 0 chr3 43273909 43274019 -184250559 + MER5A DNA MER1_type 47 183 -6 463 296 56 0 chr3 43274134 43274276 -184250302 + MIR SINE MIR 25 174 -88 722 171 33 26 chr3 43274992 43275108 -184249470 - THE1B LTR MaLR 0 364 250 1419 166 35 3 chr3 43275108 43275398 -184249180 + L1MA4A LINE L1 5999 6297 -6 722 171 33 26 chr3 43275398 43275410 -184249168 - THE1B LTR MaLR -114 250 240 1969 110 17 30 chr3 43275410 43275710 -184248868 + AluSq SINE Alu 3 298 -15 722 171 33 26 chr3 43275710 43275732 -184248846 - THE1B LTR MaLR -124 240 212 1230 253 119 74 chr3 43275757 43276624 -184247954 + L1ME3A LINE L1 5264 6169 -1 864 176 18 0 chr3 43276625 43276795 -184247783 + L1MB3 LINE L1 6002 6174 -9 2071 105 14 8 chr3 43277172 43277529 -184247049 - LTR7 LTR ERV1 -2 448 1 2207 114 50 13 chr3 43277529 43277907 -184246671 - HERVH LTR ERV1 0 7713 7322 1304 130 33 9 chr3 43277905 43278120 -184246458 - HERVH LTR ERV1 -1894 5819 5600 * 4342 138 0 1 chr3 43278127 43278784 -184245794 - HERVH LTR ERV1 -2570 5143 4488 3431 98 8 6 chr3 43278786 43279287 -184245291 - HERVH LTR ERV1 -3720 3993 3492 861 149 20 0 chr3 43279277 43279425 -184245153 - HERVH LTR ERV1 -4423 3290 3140 * 14040 92 9 21 chr3 43279419 43282429 -184242149 - HERVH LTR ERV1 -4726 2987 1 2128 88 11 8 chr3 43282431 43282789 -184241789 - LTR7 LTR ERV1 -2 448 1 182 282 10 78 chr3 43284487 43284590 -184239988 + L2 LINE L2 2554 2649 -665 45 55 0 0 chr3 43285332 43285405 -184239173 + AT_rich Low_complexity Low_complexity 1 73 0 2722 179 62 81 chr3 43288794 43289461 -184235117 + LTR8A LTR ERV1 1 654 -73 2159 133 80 0 chr3 43289461 43289798 -184234780 - THE1B LTR MaLR 0 364 1 2722 179 62 81 chr3 43289798 43289871 -184234707 + LTR8A LTR ERV1 654 727 0 598 196 0 0 chr3 43289872 43289974 -184234604 + HUERS-P1 LTR ERV1 2 103 -6160 235 289 70 9 chr3 43290661 43290775 -184233803 + L1M4 LINE L1 2 122 -6420 1183 230 4 4 chr3 43290899 43291138 -184233440 + MLT1A1 LTR MaLR 127 365 0 21 36 0 0 chr3 43291199 43291227 -184233351 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 43291232 43291253 -184233325 + AT_rich Low_complexity Low_complexity 1 21 0 878 224 15 5 chr3 43291271 43291476 -184233102 + MER3 DNA MER1_type 2 208 -1 328 301 54 81 chr3 43291599 43291858 -184232720 + L1ME LINE L1 5411 5662 -459 889 225 58 119 chr3 43291876 43292297 -184232281 + MLT1A1 LTR MaLR 1 365 0 386 250 64 17 chr3 43292358 43292530 -184232048 - L1M4 LINE L1 -943 5203 5024 1240 80 17 28 chr3 43292571 43292747 -184231831 - AluY SINE Alu -18 293 120 344 206 87 56 chr3 43292832 43292958 -184231620 - L1M4 LINE L1 -1200 4946 4817 286 281 180 23 chr3 43293713 43293841 -184230737 + MIR SINE MIR 4 151 -111 898 361 69 20 chr3 43293901 43294643 -184229935 + ERVL LTR ERVL 1375 2152 -3612 833 310 54 46 chr3 43294757 43295059 -184229519 + ERVL LTR ERVL 2311 2620 -3144 1937 145 0 3 chr3 43295059 43295356 -184229222 + AluSx SINE Alu 1 296 -16 833 310 54 46 chr3 43295356 43295550 -184229028 + ERVL LTR ERVL 2620 2811 -2953 2960 159 50 45 chr3 43295571 43296186 -184228392 - LTR29 LTR ERV1 -4 618 1 1140 221 85 45 chr3 43296330 43296660 -184227918 - MER2 DNA MER2_type -1 343 1 1513 241 104 16 chr3 43296693 43297137 -184227441 + L2 LINE L2 1111 1593 -1721 1333 196 54 122 chr3 43297138 43297952 -184226626 + LTR8A LTR ERV1 1 727 0 865 243 176 35 chr3 43298001 43298314 -184226264 + LTR18A LTR ERVL 1 357 0 310 475 212 12 chr3 43298314 43298729 -184225849 + L2 LINE L2 1639 2136 -1178 180 152 0 0 chr3 43299686 43299719 -184224859 + CT-rich Low_complexity Low_complexity 2 34 0 405 264 114 69 chr3 43300442 43300658 -184223920 - MIR SINE MIR -2 260 38 1923 167 20 76 chr3 43300712 43301172 -184223406 + L1MA9 LINE L1 5879 6312 0 904 277 61 79 chr3 43302591 43303085 -184221493 - L2 LINE L2 0 3313 2829 16940 29 1 0 chr3 43303106 43305879 -184218699 - L1PA3 LINE L1 0 6155 3372 257 397 86 44 chr3 43306042 43306427 -184218151 + L2 LINE L2 2872 3272 0 4867 139 76 18 chr3 43307462 43308315 -184216263 - MER4D LTR ERV1 0 903 1 238 193 0 53 chr3 43308367 43308424 -184216154 - MIR SINE MIR -2 260 207 249 229 12 72 chr3 43308968 43309051 -184215527 + L2 LINE L2 3186 3263 -9 3136 127 99 40 chr3 43309249 43309847 -184214731 - MER41B LTR ERV1 -2 633 1 21 0 0 0 chr3 43310190 43310211 -184214367 + AT_rich Low_complexity Low_complexity 1 21 0 1234 203 143 12 chr3 43310912 43311353 -184213225 + LTR55 LTR ERV 1 537 -11 202 341 22 11 chr3 43311517 43311608 -184212970 - MIR SINE MIR -97 165 74 1507 230 6 6 chr3 43311634 43311986 -184212592 - MER57A LTR ERV1 0 403 52 2042 141 38 30 chr3 43312146 43312516 -184212062 - THE1C LTR MaLR 0 375 3 261 284 0 25 chr3 43312569 43312650 -184211928 - LTR67 LTR ERVL 0 557 479 22 70 0 0 chr3 43313168 43313211 -184211367 + AT_rich Low_complexity Low_complexity 1 43 0 2569 201 51 21 chr3 43313847 43314714 -184209864 - L1M4 LINE L1 -386 5798 4906 22 56 0 0 chr3 43314867 43314903 -184209675 + AT_rich Low_complexity Low_complexity 1 36 0 2063 99 0 67 chr3 43315450 43315764 -184208814 + AluY SINE Alu 1 293 -18 4804 251 42 37 chr3 43316249 43318759 -184205819 - L1ME1 LINE L1 -213 5953 3437 * 11074 212 35 25 chr3 43318757 43320563 -184204015 - L1PA16 LINE L1 0 6869 5081 1391 150 0 0 chr3 43320563 43320810 -184203768 - L1MA2 LINE L1 0 6304 6058 11074 212 35 25 chr3 43320810 43321888 -184202690 - L1PA16 LINE L1 -1788 5081 4015 1832 141 29 50 chr3 43321888 43322271 -184202307 + THE1C LTR MaLR 1 375 0 11074 212 35 25 chr3 43322271 43323595 -184200983 - L1PA16 LINE L1 -2854 4015 2134 11245 151 14 116 chr3 43323597 43324208 -184200370 - L1PA16 LINE L1 -4725 2124 1452 2023 138 0 0 chr3 43324208 43324497 -184200081 - AluSx SINE Alu -23 289 1 11245 151 14 116 chr3 43324497 43326243 -184198335 - L1PA16 LINE L1 -5397 1452 8 2127 248 104 21 chr3 43326255 43326801 -184197777 - L1ME1 LINE L1 -2702 3444 2790 1837 139 48 43 chr3 43326801 43327174 -184197404 + THE1C LTR MaLR 1 375 0 2127 248 104 21 chr3 43327174 43327544 -184197034 - L1ME1 LINE L1 -3356 2790 2452 265 255 138 21 chr3 43327691 43327836 -184196742 - L1MA2 LINE L1 -2384 5424 5263 357 290 118 42 chr3 43328122 43328546 -184196032 - L1M4 LINE L1 -1199 4947 4492 5808 119 14 7 chr3 43328597 43329907 -184194671 - L1PA15 LINE L1 -6 6159 4843 319 304 183 13 chr3 43331100 43331267 -184193311 + MIR SINE MIR 11 203 -59 320 277 57 35 chr3 43331761 43331902 -184192676 - MIR SINE MIR -3 259 116 266 336 36 9 chr3 43332297 43332407 -184192171 + MIR3 SINE MIR 94 206 -2 253 297 11 0 chr3 43332512 43332603 -184191975 + (TA)n Simple_repeat Simple_repeat 2 93 0 293 371 30 26 chr3 43333007 43333239 -184191339 - MIR SINE MIR -10 252 20 198 304 230 7 chr3 43333867 43334002 -184190576 - MIR SINE MIR -10 252 88 292 371 30 0 chr3 43335318 43335450 -184189128 + MIR SINE MIR 57 192 -70 26 0 0 0 chr3 43336352 43336378 -184188200 + AT_rich Low_complexity Low_complexity 1 26 0 579 233 125 17 chr3 43336480 43336776 -184187802 - Charlie2 DNA MER1_type -3 2859 2532 365 273 61 0 chr3 43336784 43336883 -184187695 - MIR SINE MIR -131 131 27 367 319 97 32 chr3 43339276 43339461 -184185117 + MIR SINE MIR 48 244 -18 1685 128 77 4 chr3 43339998 43340271 -184184307 - AluSx SINE Alu -19 293 1 2442 152 19 13 chr3 43340291 43340753 -184183825 - L1MA4 LINE L1 -6 6294 5830 1242 153 4 55 chr3 43340753 43340967 -184183611 + L1MA4 LINE L1 5587 5788 -512 2201 112 0 0 chr3 43340967 43341263 -184183315 - AluSx SINE Alu -16 296 1 1242 153 4 55 chr3 43341263 43341302 -184183276 + L1MA4 LINE L1 5788 5827 -473 440 330 54 41 chr3 43341339 43341633 -184182945 - L1ME4a LINE L1 -207 5914 5617 2119 104 27 3 chr3 43342130 43342428 -184182150 - AluSq SINE Alu -8 305 1 297 330 131 55 chr3 43343255 43343637 -184180941 - L2 LINE L2 -19 3294 2884 2473 47 0 31 chr3 43345312 43345630 -184178948 + AluY SINE Alu 1 308 -3 297 346 85 13 chr3 43345939 43346092 -184178486 + MIR SINE MIR 12 175 -87 21 57 0 0 chr3 43346585 43346620 -184177958 + AT_rich Low_complexity Low_complexity 1 35 0 568 306 52 6 chr3 43346887 43347060 -184177518 + MIR SINE MIR 20 200 -62 249 139 0 0 chr3 43347113 43347156 -184177422 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 36 0 0 chr3 43347162 43347190 -184177388 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 43348984 43349005 -184175573 + AT_rich Low_complexity Low_complexity 1 21 0 297 0 0 0 chr3 43350498 43350531 -184174047 + (TG)n Simple_repeat Simple_repeat 2 34 0 862 218 119 72 chr3 43350531 43350835 -184173743 - LTR16A1 LTR ERVL -3 454 125 906 214 11 11 chr3 43350835 43351022 -184173556 + MER5A DNA MER1_type 2 188 -1 862 218 119 72 chr3 43351022 43351120 -184173458 - LTR16A1 LTR ERVL -332 125 33 1451 181 0 8 chr3 43351138 43351403 -184173175 - L1PA15 LINE L1 0 6165 5903 12566 245 19 30 chr3 43351418 43352402 -184172176 - L1PA13 LINE L1 -1235 5562 4569 2205 148 60 24 chr3 43352402 43352815 -184171763 + MSTA LTR MaLR 1 428 0 12566 245 19 30 chr3 43352815 43356149 -184168429 - L1PA13 LINE L1 -2228 4569 1295 2208 310 18 29 chr3 43356126 43356843 -184167735 - L1PA13 LINE L1 -5982 805 97 * 22 0 0 0 chr3 43357527 43357549 -184167029 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 43358522 43358544 -184166034 + AT_rich Low_complexity Low_complexity 1 22 0 1893 278 121 58 chr3 43359702 43360775 -184163803 - HAL1 LINE L1 -32 2475 1244 3555 30 2 11 chr3 43360775 43361212 -184163366 - L1PA4 LINE L1 0 6155 5723 1893 278 121 58 chr3 43361212 43361916 -184162662 - HAL1 LINE L1 -1263 1244 586 355 317 73 94 chr3 43361917 43362396 -184162182 - HAL1 LINE L1 -1949 558 90 27 0 0 0 chr3 43362975 43363002 -184161576 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr3 43364246 43364282 -184160296 + AT_rich Low_complexity Low_complexity 1 36 0 402 127 14 0 chr3 43364498 43364569 -184160009 - MSTB LTR MaLR 0 426 355 279 0 0 0 chr3 43367480 43367511 -184157067 + (CA)n Simple_repeat Simple_repeat 2 32 0 180 0 0 0 chr3 43367590 43367610 -184156968 + (CCCTAA)n Simple_repeat Simple_repeat 5 24 0 249 108 0 0 chr3 43367612 43367649 -184156929 + (TG)n Simple_repeat Simple_repeat 2 38 0 279 0 0 0 chr3 43368902 43368933 -184155645 + (TG)n Simple_repeat Simple_repeat 2 32 0 243 376 20 0 chr3 43371779 43371880 -184152698 - MIR3 SINE MIR -23 185 83 1328 214 7 17 chr3 43373438 43373732 -184150846 - MER58B DNA MER1_type 0 341 51 283 324 97 16 chr3 43374032 43374217 -184150361 + MLT1H LTR MaLR 127 326 -223 291 267 69 10 chr3 43374267 43374368 -184150210 + MLT1H LTR MaLR 399 505 -44 2480 39 0 0 chr3 43375589 43375874 -184148704 + AluY SINE Alu 1 285 -26 1672 177 0 0 chr3 43376049 43376360 -184148218 + AluY SINE Alu 1 311 0 261 302 165 16 chr3 43376570 43376752 -184147826 + HAL1 LINE L1 1209 1417 -1090 1930 146 32 35 chr3 43376752 43377128 -184147450 - THE1C LTR MaLR 0 375 1 10162 122 34 8 chr3 43377134 43378667 -184145911 - THE1C-int LTR MaLR -7 1573 1 1725 162 37 40 chr3 43378667 43379043 -184145535 - THE1C LTR MaLR 0 375 1 248 335 128 5 chr3 43379043 43379246 -184145332 + HAL1 LINE L1 1413 1640 -867 243 219 12 61 chr3 43379503 43379585 -184144993 - L1MC5 LINE L1 -76 7885 7808 26 74 0 0 chr3 43379603 43379657 -184144921 + AT_rich Low_complexity Low_complexity 1 54 0 1313 266 70 19 chr3 43380488 43380901 -184143677 - LTR16A1 LTR ERVL -2 455 22 239 312 123 7 chr3 43381227 43381365 -184143213 + MIR SINE MIR 85 238 -24 2662 254 32 36 chr3 43381600 43382600 -184141978 - L1ME1 LINE L1 -5 6161 5164 250 163 0 20 chr3 43382589 43382638 -184141940 + L1ME4a LINE L1 5969 6016 -105 * 481 188 0 40 chr3 43383143 43383244 -184141334 - MLT1A1 LTR MaLR -265 100 4 184 276 35 46 chr3 43383389 43383476 -184141102 - MIR SINE MIR -83 179 94 1324 212 42 10 chr3 43383641 43383806 -184140772 - AluJo SINE Alu -15 297 118 723 44 0 0 chr3 43383806 43383897 -184140681 + (TTTC)n Simple_repeat Simple_repeat 2 92 0 1324 212 42 10 chr3 43383897 43384019 -184140559 - AluJo SINE Alu -194 118 1 2075 90 17 43 chr3 43384175 43384476 -184140102 + AluY SINE Alu 1 293 -18 263 313 24 24 chr3 43384897 43384980 -184139598 - MIR SINE MIR -92 116 34 333 208 13 0 chr3 43385845 43385922 -184138656 + MER116 DNA Mariner 1 78 -2 355 237 169 21 chr3 43386110 43386346 -184138232 - L1ME1 LINE L1 -1534 4612 4342 37835 36 2 1 chr3 43386455 43391536 -184133042 - L1PA3 LINE L1 -322 5833 749 961 250 34 15 chr3 43391539 43391803 -184132775 - L1M2 LINE L1 -6576 273 5 499 182 0 0 chr3 43391803 43391880 -184132698 - Tigger3(Golem) DNA MER2_type -2950 79 3 916 196 34 123 chr3 43391880 43392262 -184132316 + L1MB8 LINE L1 5826 6173 -5 2841 82 0 11 chr3 43392688 43393066 -184131512 + THE1C LTR MaLR 2 375 0 245 270 11 22 chr3 43394464 43394553 -184130025 + L1MC3 LINE L1 4911 4998 -1148 321 360 45 48 chr3 43394656 43395047 -184129531 + L1MEc LINE L1 39 430 -5966 1681 143 35 47 chr3 43395047 43395271 -184129307 - MER44D DNA MER2_type -1882 609 384 537 16 0 0 chr3 43395271 43395333 -184129245 + (CA)n Simple_repeat Simple_repeat 2 63 0 1681 143 35 47 chr3 43395333 43395451 -184129127 - MER44D DNA MER2_type -2107 384 1 321 360 45 48 chr3 43395451 43395925 -184128653 + L1MEc LINE L1 430 901 -5495 * 5287 255 59 12 chr3 43395921 43397208 -184127370 + L1MC3 LINE L1 5477 6824 -961 2634 240 153 14 chr3 43397219 43398045 -184126533 - L1M4c LINE L1 -5415 969 30 239 250 79 0 chr3 43398958 43399034 -184125544 + (AATAG)n Simple_repeat Simple_repeat 2 83 0 23 0 0 0 chr3 43399387 43399410 -184125168 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr3 43402183 43402204 -184122374 + (CA)n Simple_repeat Simple_repeat 2 22 0 199 143 18 36 chr3 43403341 43403397 -184121181 + A-rich Low_complexity Low_complexity 5 59 0 2302 185 32 28 chr3 43403680 43404079 -184120499 + MLT1C LTR MaLR 1 404 -63 2815 13 0 0 chr3 43404079 43404387 -184120191 - AluY SINE Alu -3 308 1 2302 185 32 28 chr3 43404387 43404452 -184120126 + MLT1C LTR MaLR 404 467 0 314 200 94 12 chr3 43405333 43405418 -184119160 - MIR SINE MIR -1 261 170 236 297 16 70 chr3 43406075 43406203 -184118375 - MIR SINE MIR -70 192 72 24 0 0 0 chr3 43406434 43406458 -184118120 + AT_rich Low_complexity Low_complexity 1 24 0 5031 97 8 14 chr3 43406459 43407191 -184117387 - L1PA10 LINE L1 -2 6166 5439 485 328 116 17 chr3 43407294 43407648 -184116930 - L1M4 LINE L1 -1606 4540 4152 1451 205 0 47 chr3 43407657 43407974 -184116604 - AluJb SINE Alu -10 302 1 251 120 0 40 chr3 43408162 43408212 -184116366 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 643 187 22 30 chr3 43408226 43408360 -184116218 + L1MD3 LINE L1 6726 6858 -1137 289 365 74 5 chr3 43408400 43408589 -184115989 - MIR SINE MIR -15 247 46 213 269 0 77 chr3 43410393 43410471 -184114107 - MIR SINE MIR -73 189 118 466 275 23 15 chr3 43410639 43410770 -184113808 + MIR SINE MIR 110 241 -21 240 237 15 37 chr3 43411005 43411140 -184113438 + (TTATA)n Simple_repeat Simple_repeat 5 136 0 2013 146 9 3 chr3 43411166 43411489 -184113089 - MER7A DNA MER2_type -23 323 1 444 350 48 18 chr3 43411789 43412186 -184112392 - MLT1I LTR MaLR 0 409 1 2263 103 10 0 chr3 43412460 43412762 -184111816 - AluSc SINE Alu -4 305 1 671 35 12 0 chr3 43413374 43413460 -184111118 + (TAGA)n Simple_repeat Simple_repeat 4 90 0 768 170 0 30 chr3 43413752 43413887 -184110691 - AluJb SINE Alu -181 131 1 482 288 52 47 chr3 43414180 43414413 -184110165 - L1ME LINE L1 -443 5727 5494 30 45 0 0 chr3 43414570 43414614 -184109964 + AT_rich Low_complexity Low_complexity 1 44 0 1920 133 21 0 chr3 43414651 43414853 -184109725 - AluSx SINE Alu 0 330 118 194 0 39 0 chr3 43414853 43414879 -184109699 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1920 133 21 0 chr3 43414879 43415000 -184109578 - AluSx SINE Alu -212 118 1 588 290 0 18 chr3 43415004 43415221 -184109357 - L1MC4 LINE L1 -472 7570 7358 232 316 66 0 chr3 43415281 43415357 -184109221 + LTR16A1 LTR ERVL 57 137 -320 1342 264 43 23 chr3 43415734 43416249 -184108329 - L1ME1 LINE L1 -5 6230 5706 228 367 32 6 chr3 43416320 43416478 -184108100 - L1MEc LINE L1 -5925 471 310 378 245 0 49 chr3 43416490 43416592 -184107986 - L1ME1 LINE L1 -2260 3955 3859 324 0 0 0 chr3 43416592 43416628 -184107950 + (TG)n Simple_repeat Simple_repeat 2 37 0 1835 135 4 4 chr3 43416715 43416996 -184107582 - AluSx SINE Alu -13 299 19 8108 216 20 15 chr3 43417058 43418682 -184105896 + L1M1 LINE L1 11 1642 -5923 309 136 0 0 chr3 43418685 43418729 -184105849 + L1M1 LINE L1 1731 1774 -5791 21915 191 22 20 chr3 43418746 43419249 -184105329 - L1PA11 LINE L1 -266 7346 6845 2321 92 0 10 chr3 43419249 43419554 -184105024 - AluY SINE Alu -5 306 5 21915 191 22 20 chr3 43419554 43424552 -184100026 - L1PA11 LINE L1 -767 6845 1008 2275 102 3 0 chr3 43424552 43424846 -184099732 + AluSx SINE Alu 1 295 -17 21915 191 22 20 chr3 43424846 43425849 -184098729 - L1PA11 LINE L1 -6604 1008 8 461 299 43 11 chr3 43426097 43426281 -184098297 - L1ME1 LINE L1 -5988 408 219 247 252 43 43 chr3 43427152 43427267 -184097311 + MLT1H1 LTR MaLR 439 553 -2 321 278 30 53 chr3 43427304 43427437 -184097141 + MIR SINE MIR 123 252 -10 804 262 22 71 chr3 43428531 43429031 -184095547 + MLT2C1 LTR ERVL 1 458 -6 218 368 21 21 chr3 43429032 43429127 -184095451 + L2 LINE L2 1058 1152 -2162 180 0 0 0 chr3 43430271 43430291 -184094287 + (GAA)n Simple_repeat Simple_repeat 2 21 0 4732 170 23 48 chr3 43430291 43431876 -184092702 + L1MA4 LINE L1 4705 6251 -49 240 264 0 0 chr3 43431878 43431931 -184092647 + L1M1 LINE L1 11 63 -7502 2557 155 14 9 chr3 43431931 43432357 -184092221 - MSTA LTR MaLR 0 428 1 1509 170 30 27 chr3 43432357 43432657 -184091921 - MSTA-int LTR MaLR 0 1651 1351 2648 203 37 4 chr3 43432658 43433141 -184091437 - MSTA-int LTR MaLR -764 887 389 * 5613 185 33 46 chr3 43433139 43434053 -184090525 + L1MA3 LINE L1 4088 5013 -1292 1379 187 53 14 chr3 43434053 43434336 -184090242 + AluJb SINE Alu 3 296 -16 5613 185 33 46 chr3 43434336 43435406 -184089172 + L1MA3 LINE L1 5013 6052 -253 226 136 9 91 chr3 43435435 43435545 -184089033 + (TATAA)n Simple_repeat Simple_repeat 5 105 0 1162 100 33 0 chr3 43435546 43435726 -184088852 + L1MA3 LINE L1 6120 6305 0 225 183 0 17 chr3 43435729 43435789 -184088789 + L1MA6 LINE L1 6242 6300 0 824 300 50 27 chr3 43436013 43436588 -184087990 + MLT2E LTR ERVL 3 628 0 518 334 29 32 chr3 43436847 43437158 -184087420 + ERVL-E LTR ERVL 316 625 -5139 624 337 4 4 chr3 43437325 43437592 -184086986 + ERVL-E LTR ERVL 911 1177 -4587 1141 316 0 53 chr3 43437611 43438004 -184086574 - LTR16B LTR ERVL -92 372 1 536 288 21 25 chr3 43438211 43438451 -184086127 + L1M4 LINE L1 2680 2918 -3228 392 325 48 43 chr3 43438656 43438844 -184085734 + MIR SINE MIR 7 195 -67 1046 168 9 44 chr3 43439528 43439754 -184084824 - MER20 DNA MER1_type 0 219 2 189 0 0 0 chr3 43440000 43440021 -184084557 + (TG)n Simple_repeat Simple_repeat 2 22 0 319 246 37 15 chr3 43440642 43440776 -184083802 - L1M4 LINE L1 -3642 2504 2368 25 0 0 0 chr3 43440861 43440886 -184083692 + AT_rich Low_complexity Low_complexity 1 25 0 6367 183 47 23 chr3 43440892 43443144 -184081434 - L1MA9 LINE L1 -38 6274 3959 3643 171 17 4 chr3 43443155 43443850 -184080728 - L1MA5 LINE L1 -2 6298 5595 465 232 79 17 chr3 43443862 43444039 -184080539 - L1MD3 LINE L1 -110 7885 7698 2016 133 15 6 chr3 43445243 43445574 -184079004 + L1MA4 LINE L1 5909 6242 -58 343 350 25 12 chr3 43445788 43445948 -184078630 - MIR SINE MIR -42 220 59 243 0 0 0 chr3 43446511 43446538 -184078040 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4901 122 4 49 chr3 43446681 43447419 -184077159 - L1PA4 LINE L1 -6 6149 5445 1636 210 64 35 chr3 43447454 43447907 -184076671 + MER31B LTR ERV1 1 466 0 569 96 0 0 chr3 43448063 43448136 -184076442 + Tigger3(Golem) DNA MER2_type 36 108 -2921 * 3825 126 89 13 chr3 43448128 43448826 -184075752 + Tigger3(Golem) DNA MER2_type 2279 3029 0 22 0 0 0 chr3 43449066 43449088 -184075490 + AT_rich Low_complexity Low_complexity 1 22 0 183 300 0 50 chr3 43450108 43450168 -184074410 - MIR SINE MIR -4 258 202 561 291 86 15 chr3 43450244 43450600 -184073978 + LTR33 LTR ERVL 104 512 -9 320 322 62 28 chr3 43450818 43450882 -184073696 - MIR SINE MIR -73 189 129 1446 243 67 30 chr3 43450882 43451418 -184073160 - LTR38 LTR ERV1 0 556 1 320 322 62 28 chr3 43451418 43451530 -184073048 - MIR SINE MIR -133 129 7 2298 74 0 0 chr3 43452009 43452321 -184072257 + AluY SINE Alu 1 312 0 1324 286 56 34 chr3 43452373 43453073 -184071505 - L1ME3 LINE L1 -216 6015 5293 23 0 0 0 chr3 43453347 43453370 -184071208 + AT_rich Low_complexity Low_complexity 1 23 0 3709 156 80 6 chr3 43453443 43454105 -184070473 - MER50 LTR ERV1 -23 711 1 343 309 53 0 chr3 43454277 43454429 -184070149 - L1ME3 LINE L1 -4723 1673 1514 2575 213 42 101 chr3 43454493 43454933 -184069645 - MER21B LTR ERV1 -109 754 380 1409 185 83 0 chr3 43454933 43455209 -184069369 - AluJo SINE Alu -10 302 4 2575 213 42 101 chr3 43455209 43455557 -184069021 - MER21B LTR ERV1 -483 380 13 25 0 0 0 chr3 43455681 43455706 -184068872 + AT_rich Low_complexity Low_complexity 1 25 0 699 226 0 0 chr3 43455764 43455910 -184068668 + L1MD3 LINE L1 7830 7975 -20 203 133 0 0 chr3 43456842 43456872 -184067706 + (CA)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr3 43457337 43457359 -184067219 + AT_rich Low_complexity Low_complexity 1 22 0 1411 225 128 47 chr3 43457773 43458498 -184066080 - L1MC5 LINE L1 -304 7657 6874 23 68 0 0 chr3 43458517 43458561 -184066017 + AT_rich Low_complexity Low_complexity 1 44 0 4729 136 44 7 chr3 43458561 43459399 -184065179 - L1MA6 LINE L1 -6 6294 5426 6577 220 24 76 chr3 43459401 43460332 -184064246 - L1M4c LINE L1 -1224 5158 4181 4911 163 26 13 chr3 43460332 43461241 -184063337 + MER49 LTR ERV1 3 923 0 6577 220 24 76 chr3 43461241 43461633 -184062945 - L1M4c LINE L1 -2201 4181 3770 2359 152 24 36 chr3 43461633 43461989 -184062589 + MSTC LTR MaLR 10 362 -66 2055 136 7 0 chr3 43461989 43462299 -184062279 + AluSx SINE Alu 1 312 0 2359 152 24 36 chr3 43462299 43462363 -184062215 + MSTC LTR MaLR 362 425 -3 6577 220 24 76 chr3 43462363 43463944 -184060634 - L1M4c LINE L1 -2612 3770 2263 2234 194 22 18 chr3 43464052 43464548 -184060030 - L1 LINE L1 -2221 5344 4847 * 5929 127 83 4 chr3 43464516 43465581 -184058997 - L1 LINE L1 -3925 3640 2492 229 235 0 0 chr3 43466012 43466063 -184058515 - L1MC4 LINE L1 -1339 6703 6653 * 307 278 0 0 chr3 43466032 43466122 -184058456 + L1MC4 LINE L1 6614 6703 -1339 * 313 228 0 22 chr3 43466080 43466172 -184058406 - L1MC4 LINE L1 -1339 6703 6614 1795 57 0 4 chr3 43466201 43466431 -184058147 - L1PA7 LINE L1 -15 6139 5911 8511 86 17 1 chr3 43466542 43468309 -184056269 - L1PA7 LINE L1 -217 5937 4149 5674 193 28 6 chr3 43468292 43470150 -184054428 - L1MA4A LINE L1 -331 5972 4075 * 16233 158 19 8 chr3 43470250 43473176 -184051402 - L1P LINE L1 -837 5309 2355 5156 226 42 49 chr3 43473183 43474777 -184049801 - L1P3 LINE L1 -4510 1941 400 1930 120 67 0 chr3 43474777 43475060 -184049518 + AluSx SINE Alu 1 302 -10 5156 226 42 49 chr3 43475060 43475448 -184049130 - L1P3 LINE L1 -6051 400 11 1929 129 29 0 chr3 43475632 43475912 -184048666 - AluSx SINE Alu -24 288 1 26 0 0 0 chr3 43476714 43476740 -184047838 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr3 43476851 43476880 -184047698 + AT_rich Low_complexity Low_complexity 1 29 0 1483 217 65 12 chr3 43477655 43477996 -184046582 + L1MB7 LINE L1 5826 6184 0 33 56 0 0 chr3 43478039 43478093 -184046485 + AT_rich Low_complexity Low_complexity 1 54 0 21 36 0 0 chr3 43478151 43478179 -184046399 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 43478604 43478632 -184045946 + AT_rich Low_complexity Low_complexity 1 28 0 1438 173 111 15 chr3 43479439 43479780 -184044798 - MLT1A2 LTR MaLR 0 374 1 234 244 106 16 chr3 43480004 43480127 -184044451 + L1ME4a LINE L1 5985 6118 -3 6061 91 25 5 chr3 43480234 43481514 -184043064 - L1PA8A LINE L1 -1 6130 4840 299 318 14 84 chr3 43482064 43482350 -184042228 + L2 LINE L2 2152 2417 -897 37874 36 2 1 chr3 43483119 43489260 -184035318 + L1PA4 LINE L1 4 6152 -3 23 33 0 0 chr3 43489260 43489290 -184035288 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 43489308 43489336 -184035242 + AT_rich Low_complexity Low_complexity 1 28 0 1451 166 4 18 chr3 43489625 43489903 -184034675 - L1MB7 LINE L1 -16 6168 5895 1272 164 5 5 chr3 43490177 43490385 -184034193 + AluJo SINE Alu 87 294 -18 1021 216 118 31 chr3 43493863 43494220 -184030358 - LTR37A LTR ERV1 0 426 39 890 197 22 0 chr3 43494621 43494804 -184029774 + MER5A DNA MER1_type 3 189 0 795 174 33 33 chr3 43495445 43495629 -184028949 + L1MA9 LINE L1 6091 6274 -38 266 341 52 75 chr3 43495735 43496084 -184028494 - LTR16C LTR ERVL -67 424 84 219 356 83 0 chr3 43496368 43496500 -184028078 + MIR SINE MIR 22 164 -98 488 272 185 0 chr3 43496574 43496715 -184027863 - MIR SINE MIR -1 261 147 249 33 0 0 chr3 43496715 43496745 -184027833 + (CA)n Simple_repeat Simple_repeat 2 31 0 488 272 185 0 chr3 43496745 43496798 -184027780 - MIR SINE MIR -115 147 31 1530 240 179 7 chr3 43497904 43498450 -184026128 + L1MC4a LINE L1 6433 7072 -736 230 175 0 0 chr3 43498463 43498503 -184026075 + L1MC4 LINE L1 7211 7250 -792 302 257 129 24 chr3 43498504 43498714 -184025864 + L1MC4 LINE L1 7803 8034 -8 922 155 81 0 chr3 43498954 43499102 -184025476 + AluJb SINE Alu 138 297 -15 187 136 271 51 chr3 43499478 43499537 -184025041 - MIR SINE MIR -16 246 175 1467 33 0 16 chr3 43499577 43499759 -184024819 - L1PA3 LINE L1 0 6155 5977 5436 19 0 2 chr3 43499759 43500391 -184024187 + L1PA3 LINE L1 5357 5987 -168 390 42 0 0 chr3 43500935 43500983 -184023595 + (CA)n Simple_repeat Simple_repeat 1 48 0 211 161 0 143 chr3 43501563 43501596 -184022982 + L2 LINE L2 3249 3272 -41 1798 211 24 22 chr3 43501596 43501970 -184022608 + MLT2D LTR ERVL 1 378 -36 273 29 0 0 chr3 43501970 43502004 -184022574 + (CA)n Simple_repeat Simple_repeat 2 35 0 1798 211 24 22 chr3 43502004 43502042 -184022536 + MLT2D LTR ERVL 378 414 0 211 161 0 143 chr3 43502042 43502064 -184022514 + L2 LINE L2 3272 3296 -17 239 321 7 56 chr3 43503030 43503165 -184021413 + MIR SINE MIR 17 144 -64 488 251 256 18 chr3 43503779 43503998 -184020580 + Charlie2 DNA MER1_type 2 272 -2510 336 56 6 41 chr3 43503997 43504051 -184020527 + MLT1A2 LTR MaLR 312 459 -8 * 1002 284 59 22 chr3 43504114 43504470 -184020108 + L1MEc LINE L1 36 404 -5992 2715 200 69 99 chr3 43504470 43504558 -184020020 + L1ME1 LINE L1 5193 5282 -884 7750 17 1 1 chr3 43504558 43505952 -184018626 + L1PA2 LINE L1 4761 6154 -1 2715 200 69 99 chr3 43505952 43506062 -184018516 + L1ME1 LINE L1 5282 5394 -772 1792 175 0 22 chr3 43506062 43506377 -184018201 + AluJo SINE Alu 1 308 -4 2715 200 69 99 chr3 43506377 43507167 -184017411 + L1ME1 LINE L1 5394 6161 -5 185 81 0 54 chr3 43508125 43508162 -184016416 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 23 54 0 0 chr3 43508733 43508770 -184015808 + AT_rich Low_complexity Low_complexity 1 37 0 1732 233 30 4 chr3 43509182 43509641 -184014937 - Charlie4a DNA MER1_type -8 500 30 240 35 0 0 chr3 43510237 43510266 -184014312 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 270 323 217 22 chr3 43510869 43511145 -184013433 + L3 LINE CR1 1073 1402 -175 1568 234 17 34 chr3 43511528 43511946 -184012632 + L1MCb LINE L1 1 411 -5634 1290 265 52 7 chr3 43511952 43512416 -184012162 + L1M4 LINE L1 4076 4560 -1586 533 187 22 45 chr3 43512388 43512522 -184012056 + L1MC3 LINE L1 7654 7784 -1 * 201 244 26 51 chr3 43512989 43513067 -184011511 + CT-rich Low_complexity Low_complexity 2 77 0 1727 224 104 38 chr3 43513720 43514305 -184010273 - MLT1E2 LTR MaLR -2 624 1 530 270 95 56 chr3 43514382 43514634 -184009944 - MIR SINE MIR 0 262 1 182 308 90 13 chr3 43514894 43514972 -184009606 + L2 LINE L2 3230 3313 0 239 245 0 0 chr3 43515127 43515176 -184009402 + (CATATA)n Simple_repeat Simple_repeat 5 53 0 379 296 161 0 chr3 43515801 43515987 -184008591 - MIR SINE MIR -31 231 16 1990 143 5 16 chr3 43516024 43516396 -184008182 + L1MA3 LINE L1 4269 4636 -1510 * 6296 126 38 6 chr3 43516373 43517482 -184007096 + L1MA3 LINE L1 5163 6305 0 212 0 36 0 chr3 43518013 43518041 -184006537 + (CA)n Simple_repeat Simple_repeat 1 29 0 1817 146 33 4 chr3 43518432 43518742 -184005836 - AluSg SINE Alu 0 318 1 26 0 0 0 chr3 43518742 43518768 -184005810 + AT_rich Low_complexity Low_complexity 1 26 0 591 317 135 43 chr3 43519074 43519716 -184004862 - L2 LINE L2 -3 3310 2603 183 343 14 14 chr3 43520003 43520076 -184004502 + MIR3 SINE MIR 88 160 -48 481 308 97 0 chr3 43520235 43520420 -184004158 + L2 LINE L2 3111 3313 0 924 142 39 13 chr3 43521669 43521824 -184002754 + MLT1A1 LTR MaLR 1 159 -206 2592 249 34 92 chr3 43521840 43522988 -184001590 + L1M1 LINE L1 21 2171 -5394 6838 53 11 3 chr3 43522988 43524365 -184000213 + L1PA7 LINE L1 4755 6141 -13 2592 249 34 92 chr3 43524365 43524594 -183999984 + L1M1 LINE L1 2171 2412 -5153 1328 240 45 178 chr3 43524592 43525282 -183999296 - L1M1 LINE L1 -5559 2006 317 * 10490 191 87 40 chr3 43525267 43528459 -183996119 + L1M1 LINE L1 2391 5814 -1751 414 0 0 0 chr3 43528459 43528505 -183996073 + (TG)n Simple_repeat Simple_repeat 2 47 0 10490 191 87 40 chr3 43528505 43529170 -183995408 + L1M1 LINE L1 5814 6446 -1119 632 235 104 131 chr3 43529170 43529682 -183994896 + LTR28 LTR ERV1 1 1305 -450 4128 208 32 18 chr3 43529771 43530646 -183993932 + MER52-int LTR ERV1 1 887 -6204 18951 148 19 11 chr3 43530668 43533853 -183990725 + MER52-int LTR ERV1 1003 4477 -2614 2006 188 30 29 chr3 43533853 43534411 -183990167 - MLT2A2 LTR ERVL 0 554 1 15018 113 14 37 chr3 43534411 43537085 -183987493 + MER52-int LTR ERV1 4473 7091 0 337 240 0 13 chr3 43537096 43537171 -183987407 + MER52C LTR ERV1 612 685 -593 1133 224 5 9 chr3 43537233 43537456 -183987122 + MLT1A1 LTR MaLR 144 365 0 229 387 32 24 chr3 43537606 43537730 -183986848 + L2 LINE L2 3137 3261 -11 390 115 0 0 chr3 43538085 43538103 -183986475 + (TG)n Simple_repeat Simple_repeat 1 79 0 390 115 0 0 chr3 43538103 43538164 -183986414 + (TG)n Simple_repeat Simple_repeat 2 62 0 23 0 0 0 chr3 43538916 43538939 -183985639 + AT_rich Low_complexity Low_complexity 1 23 0 344 235 8 114 chr3 43539030 43539078 -183985500 - MLT1H LTR MaLR -357 192 141 875 249 29 0 chr3 43539078 43539251 -183985327 + MER45A DNA AcHobo 1 178 0 344 235 8 114 chr3 43539251 43539334 -183985244 - MLT1H LTR MaLR -408 141 75 357 231 7 48 chr3 43539369 43539478 -183985100 - MIR SINE MIR -36 172 66 272 308 50 0 chr3 43540427 43540547 -183984031 - MIR SINE MIR -15 247 122 5469 189 10 12 chr3 43540549 43541450 -183983128 - L1PA16 LINE L1 -16 6150 5248 3258 199 30 77 chr3 43541450 43542466 -183982112 - LTR5 LTR ERVK 0 969 1 5469 189 10 12 chr3 43542466 43543582 -183980996 - L1PA16 LINE L1 -918 5248 4147 947 283 108 25 chr3 43543722 43544165 -183980413 - MLT1H LTR MaLR -26 523 1 181 62 125 0 chr3 43544485 43544517 -183980061 + L2 LINE L2 3221 3256 -16 201 229 0 0 chr3 43545407 43545455 -183979123 + (TA)n Simple_repeat Simple_repeat 1 48 0 329 295 42 91 chr3 43545457 43545574 -183979004 - L1MC4a LINE L1 -1836 5972 5851 1609 179 75 20 chr3 43545574 43545920 -183978658 - MLT1A1 LTR MaLR 0 365 1 329 295 42 91 chr3 43545920 43546087 -183978491 - L1MC4a LINE L1 -1957 5851 5702 294 350 105 0 chr3 43546138 43546338 -183978240 + MIR SINE MIR 39 259 -3 308 308 53 58 chr3 43546488 43546696 -183977882 - L1MC4a LINE L1 -2334 5474 5268 298 317 153 36 chr3 43546906 43547155 -183977423 - L2 LINE L2 -196 3117 2840 1828 23 0 0 chr3 43547343 43547558 -183977020 + L1PA2 LINE L1 5941 6155 0 210 185 37 0 chr3 43547874 43547928 -183976650 + (TG)n Simple_repeat Simple_repeat 2 57 0 2203 196 28 74 chr3 43548551 43549132 -183975446 + MLT2B3 LTR ERVL 1 554 0 429 307 51 71 chr3 43549685 43550095 -183974483 - LTR16C LTR ERVL -2 489 88 185 222 16 0 chr3 43550828 43550891 -183973687 + (TA)n Simple_repeat Simple_repeat 1 64 0 301 318 114 39 chr3 43551402 43551682 -183972896 - L1MC/D LINE L1 -1968 5840 5540 250 186 51 17 chr3 43551837 43551896 -183972682 - MER46C DNA MER2_type -223 115 55 1430 199 96 14 chr3 43552056 43552422 -183972156 - MSTD LTR MaLR 0 396 1 25 0 0 0 chr3 43552968 43552993 -183971585 + AT_rich Low_complexity Low_complexity 1 25 0 467 282 47 18 chr3 43553473 43553692 -183970886 - L1M4c LINE L1 -4834 1708 1497 28 79 0 0 chr3 43553715 43553778 -183970800 + AT_rich Low_complexity Low_complexity 1 63 0 24 53 0 0 chr3 43553805 43553843 -183970735 + AT_rich Low_complexity Low_complexity 1 38 0 511 199 46 0 chr3 43553960 43554091 -183970487 + L1M4 LINE L1 4114 4250 -1896 549 253 101 56 chr3 43554184 43554379 -183970199 + L1M4 LINE L1 3401 3586 -2560 2167 86 38 3 chr3 43554379 43554670 -183969908 + AluY SINE Alu 1 301 -10 549 253 101 56 chr3 43554670 43554830 -183969748 + L1M4 LINE L1 3586 3772 -2374 228 277 15 23 chr3 43554845 43554975 -183969603 + L1MEc LINE L1 2506 2634 -4111 3806 208 134 120 chr3 43555063 43557113 -183967465 + L1MEc LINE L1 30 2419 -4326 3346 171 65 39 chr3 43557143 43559012 -183965566 + L1MC3 LINE L1 5825 7785 0 546 296 21 18 chr3 43559039 43559319 -183965259 + L1MEc LINE L1 2713 2993 -3571 1806 207 31 8 chr3 43559595 43559952 -183964626 - MLT1A1 LTR MaLR 0 365 1 348 226 118 10 chr3 43560141 43560243 -183964335 + MIR SINE MIR 113 225 -37 393 39 0 0 chr3 43561178 43561229 -183963349 + (TG)n Simple_repeat Simple_repeat 2 52 0 1026 106 0 0 chr3 43561333 43561465 -183963113 - L1P3 LINE L1 -6322 139 8 21 0 0 0 chr3 43562078 43562099 -183962479 + AT_rich Low_complexity Low_complexity 1 21 0 259 317 0 12 chr3 43562396 43562478 -183962100 - MIR3 SINE MIR -18 190 110 269 178 0 0 chr3 43563295 43563340 -183961238 - MIR3 SINE MIR -51 157 113 799 301 70 69 chr3 43563615 43564212 -183960366 + L2 LINE L2 72 669 -2645 594 271 89 99 chr3 43564439 43565236 -183959342 + HAL1 LINE L1 292 1080 -1427 1827 170 10 3 chr3 43565238 43565538 -183959040 + AluJb SINE Alu 3 304 -8 609 182 0 0 chr3 43567384 43567494 -183957084 - L1PB4 LINE L1 -100 6056 5947 1044 131 0 34 chr3 43567517 43567693 -183956885 - L1PA13 LINE L1 -11 6152 5983 336 228 51 0 chr3 43567758 43567837 -183956741 - L2 LINE L2 -3 3310 3228 1024 270 35 47 chr3 43567848 43568381 -183956197 - MER115 DNA AcHobo -4 4027 114 7713 23 2 0 chr3 43568510 43569800 -183954778 - L1PA3 LINE L1 -3 6152 4861 469 219 15 29 chr3 43569996 43570133 -183954445 - L1M4 LINE L1 -2713 3433 3299 503 86 0 0 chr3 43570869 43570939 -183953639 - L1P4 LINE L1 -679 5484 5415 2273 69 0 36 chr3 43571082 43571386 -183953192 + AluY SINE Alu 1 293 -18 4056 117 8 2 chr3 43571880 43572485 -183952093 - MER4B LTR ERV1 0 610 2 477 286 32 8 chr3 43572820 43572946 -183951632 - LTR16A LTR ERVL -297 153 25 746 357 35 27 chr3 43573079 43573706 -183950872 - HERV16 LTR ERVL -388 5376 4745 714 304 35 13 chr3 43573718 43573750 -183950828 - HERV16 LTR ERVL -4045 951 921 270 73 0 0 chr3 43573750 43573791 -183950787 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 714 304 35 13 chr3 43573791 43573988 -183950590 - HERV16 LTR ERVL -4075 921 717 8808 168 41 56 chr3 43574029 43576903 -183947675 - L1M1 LINE L1 -4431 3134 2 414 268 67 37 chr3 43578941 43579105 -183945473 + MIR SINE MIR 50 218 -44 1954 113 0 4 chr3 43579452 43579717 -183944861 - AluSg SINE Alu -46 264 1 1710 97 9 0 chr3 43579717 43579945 -183944633 - AluSp SINE Alu -2 311 82 345 279 121 21 chr3 43580251 43580391 -183944187 - MIR3 SINE MIR -15 193 40 732 186 29 7 chr3 43580739 43580879 -183943699 + MLT1D LTR MaLR 363 505 0 979 226 23 14 chr3 43581059 43581276 -183943302 - MER20 DNA MER1_type 0 219 1 25 0 0 0 chr3 43581362 43581387 -183943191 + AT_rich Low_complexity Low_complexity 1 25 0 642 306 17 12 chr3 43581460 43581633 -183942945 - MER5A DNA MER1_type 0 189 16 7090 185 72 27 chr3 43581837 43581984 -183942594 - L1MC3 LINE L1 0 7785 7646 2382 146 23 32 chr3 43581984 43582416 -183942162 - MSTA LTR MaLR 0 428 1 7090 185 72 27 chr3 43582416 43583885 -183940693 - L1MC3 LINE L1 -139 7646 6095 1012 292 94 49 chr3 43583919 43584286 -183940292 - L1M4 LINE L1 -2689 3457 3108 2157 98 27 24 chr3 43584286 43584581 -183939997 - AluSq SINE Alu -17 296 1 1012 292 94 49 chr3 43584581 43585129 -183939449 - L1M4 LINE L1 -3038 3108 2446 263 246 43 0 chr3 43585131 43585200 -183939378 - HAL1 LINE L1 -1082 1425 1354 319 196 32 18 chr3 43585207 43585319 -183939259 - Alu SINE Alu 0 301 248 518 257 57 46 chr3 43585321 43585496 -183939082 - HAL1 LINE L1 -1215 1292 1116 211 282 39 48 chr3 43585552 43585655 -183938923 + L2 LINE L2 2907 3008 -264 290 292 128 53 chr3 43586517 43586760 -183937818 - MIR SINE MIR 0 262 2 12300 191 23 31 chr3 43586793 43592336 -183932242 - L1PB1 LINE L1 0 6867 1392 733 244 19 14 chr3 43592312 43592521 -183932057 - L1PB1 LINE L1 -6646 217 8 * 195 299 35 23 chr3 43593174 43593261 -183931317 + MIR SINE MIR 1 88 -174 372 300 62 0 chr3 43596987 43597117 -183927461 - MIR SINE MIR -81 181 44 633 256 130 10 chr3 43598522 43598729 -183925849 + LTR16A1 LTR ERVL 226 457 0 798 271 89 7 chr3 43600180 43600472 -183924106 + L1ME3A LINE L1 5847 6162 -8 1539 173 92 46 chr3 43601254 43601624 -183922954 - MLT1B LTR MaLR -2 388 2 197 246 0 53 chr3 43602494 43602551 -183922027 + MIR SINE MIR 91 144 -118 194 277 21 0 chr3 43602520 43602567 -183922011 + MIR3 SINE MIR 115 162 -46 * 298 304 94 72 chr3 43602642 43602823 -183921755 - MIR3 SINE MIR 0 262 78 36 62 0 0 chr3 43604267 43604331 -183920247 + AT_rich Low_complexity Low_complexity 1 64 0 535 302 42 90 chr3 43604688 43605145 -183919433 - LTR16A1 LTR ERVL -9 448 14 595 270 56 92 chr3 43605174 43605212 -183919366 - L2 LINE L2 -1 3312 3274 1326 180 31 13 chr3 43605212 43605529 -183919049 + MER33 DNA MER1_type 2 324 0 595 270 56 92 chr3 43605529 43605849 -183918729 - L2 LINE L2 -39 3274 2967 293 228 102 31 chr3 43608150 43608277 -183916301 + MIR SINE MIR 70 205 -57 238 279 0 0 chr3 43608556 43608624 -183915954 + L1ME LINE L1 5382 5449 -717 2186 115 0 7 chr3 43609475 43609771 -183914807 + AluSx SINE Alu 1 294 -18 1514 178 54 18 chr3 43610888 43611164 -183913414 + AluJo SINE Alu 1 286 -26 207 406 0 0 chr3 43613164 43613260 -183911318 + L2 LINE L2 3166 3261 -52 565 294 115 2 chr3 43613751 43613967 -183910611 + MIR SINE MIR 25 259 -3 23 0 0 0 chr3 43614010 43614033 -183910545 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 43614455 43614476 -183910102 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr3 43614868 43614893 -183909685 + (T)n Simple_repeat Simple_repeat 1 25 0 187 267 0 0 chr3 43615102 43615147 -183909431 - L2 LINE L2 -13 3259 3215 260 353 85 30 chr3 43615285 43615486 -183909092 + MIR SINE MIR 25 236 -26 33 85 0 0 chr3 43616244 43616326 -183908252 + AT_rich Low_complexity Low_complexity 1 82 0 1431 269 83 57 chr3 43616359 43618177 -183906401 + L1ME3A LINE L1 4233 6097 -73 26 30 0 0 chr3 43618210 43618243 -183906335 + AT_rich Low_complexity Low_complexity 1 33 0 327 201 122 31 chr3 43618406 43618523 -183906055 - L1MC/D LINE L1 -928 5500 5377 192 77 0 0 chr3 43618529 43618555 -183906023 + (TTA)n Simple_repeat Simple_repeat 2 27 0 278 256 23 70 chr3 43618606 43618735 -183905843 + MIR SINE MIR 71 193 -69 184 395 106 16 chr3 43618924 43619349 -183905229 + L2 LINE L2 2510 2972 -342 213 121 0 0 chr3 43619601 43619634 -183904944 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 731 87 8 0 chr3 43619786 43619912 -183904666 + (TAGA)n Simple_repeat Simple_repeat 4 130 0 300 91 0 0 chr3 43621597 43621641 -183902937 + (CA)n Simple_repeat Simple_repeat 1 44 0 5371 252 63 33 chr3 43622739 43625254 -183899324 - L1MEc LINE L1 -1726 4489 1930 562 271 191 5 chr3 43626135 43626345 -183898233 + MIR SINE MIR 1 249 -13 228 135 0 0 chr3 43626420 43626457 -183898121 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 187 325 38 25 chr3 43626461 43626541 -183898037 - L2 LINE L2 -4 3268 3188 7450 30 1 6 chr3 43626800 43628358 -183896220 + L1PA5 LINE L1 4596 6147 -7 24 0 0 0 chr3 43628358 43628382 -183896196 + AT_rich Low_complexity Low_complexity 1 24 0 273 274 52 74 chr3 43629972 43630107 -183894471 - MIR SINE MIR -123 139 8 286 253 84 0 chr3 43630159 43630242 -183894336 + L2 LINE L2 3224 3313 0 441 239 64 0 chr3 43630533 43630642 -183893936 - LTR16A1 LTR ERVL -7 450 335 609 342 27 42 chr3 43631011 43631417 -183893161 - L2 LINE L2 -2 3311 2912 258 364 88 57 chr3 43631580 43631877 -183892701 - L2 LINE L2 -49 3223 2918 263 299 41 10 chr3 43632066 43632163 -183892415 + MER5A DNA MER1_type 1 100 -89 312 253 11 11 chr3 43632412 43632499 -183892079 - MIR SINE MIR -85 177 91 496 293 143 45 chr3 43632720 43632958 -183891620 + L1ME4a LINE L1 5381 5594 -527 891 198 35 0 chr3 43632958 43633130 -183891448 - MER45A DNA AcHobo 0 178 1 496 293 143 45 chr3 43633130 43633465 -183891113 + L1ME4a LINE L1 5594 6010 -111 3347 139 44 19 chr3 43633685 43634273 -183890305 + LTR26 LTR ERV1 1 603 0 8685 183 9 22 chr3 43634530 43636762 -183887816 + L1PA16 LINE L1 3287 5473 -693 2321 100 0 28 chr3 43636762 43637082 -183887496 + AluSx SINE Alu 2 312 0 8685 183 9 22 chr3 43637082 43637759 -183886819 + L1PA16 LINE L1 5473 6157 -9 5467 23 0 0 chr3 43638159 43638806 -183885772 - L1PA2 LINE L1 -1280 4866 4220 7822 17 0 0 chr3 43638806 43640101 -183884477 + L1PA2 LINE L1 4860 6154 -1 337 314 29 36 chr3 43640254 43640394 -183884184 + MIR SINE MIR 1 139 -123 306 311 79 45 chr3 43640636 43640903 -183883675 + L1MC4a LINE L1 3589 3864 -2282 236 172 17 0 chr3 43641208 43641266 -183883312 + CT-rich Low_complexity Low_complexity 3 61 0 599 315 63 28 chr3 43641473 43642120 -183882458 + L1MC4a LINE L1 5264 5933 -1875 2427 94 3 6 chr3 43643103 43643454 -183881124 + L1PA13 LINE L1 5814 6163 0 1831 156 12 22 chr3 43643971 43644291 -183880287 - MER2 DNA MER2_type -27 318 2 22 35 0 0 chr3 43645067 43645096 -183879482 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr3 43645619 43645640 -183878938 + (TA)n Simple_repeat Simple_repeat 1 21 0 1967 120 29 0 chr3 43645643 43645917 -183878661 - AluSp SINE Alu -31 282 1 38 81 0 0 chr3 43647137 43647224 -183877354 + AT_rich Low_complexity Low_complexity 1 87 0 441 249 197 42 chr3 43647946 43648114 -183876464 - HAL1 LINE L1 -807 1700 1491 1849 159 27 0 chr3 43648114 43648409 -183876169 - AluJb SINE Alu -9 303 1 441 249 197 42 chr3 43648409 43648453 -183876125 - HAL1 LINE L1 -1016 1491 1455 347 0 0 0 chr3 43649329 43649371 -183875207 - L1PA3 LINE L1 -5 6150 6109 16963 192 26 28 chr3 43650240 43654635 -183869943 + L1PA10 LINE L1 1 4538 -1923 6073 74 54 16 chr3 43654656 43656094 -183868484 + L1PA10 LINE L1 4993 6478 -5 225 282 12 35 chr3 43656329 43656414 -183868164 - L1ME LINE L1 -473 5648 5566 740 196 0 8 chr3 43656487 43656620 -183867958 - FLAM_A SINE Alu -1 132 1 245 289 13 13 chr3 43656963 43657039 -183867539 + MIR SINE MIR 78 153 -55 692 308 103 34 chr3 43657256 43657701 -183866877 + L2 LINE L2 2827 3302 -11 300 70 0 0 chr3 43659999 43660042 -183864536 + (CA)n Simple_repeat Simple_repeat 2 44 0 433 286 145 38 chr3 43660901 43661405 -183863173 + L1M4 LINE L1 4289 4846 -1300 30 0 0 0 chr3 43661492 43661522 -183863056 + AT_rich Low_complexity Low_complexity 1 30 0 2280 109 0 0 chr3 43661741 43662043 -183862535 + AluSg SINE Alu 1 302 -8 6586 85 17 3 chr3 43662484 43664269 -183860309 - L1PA11 LINE L1 0 6174 4379 5814 239 22 16 chr3 43664285 43665577 -183859001 - L1PA12 LINE L1 -6277 1304 6 2385 83 0 13 chr3 43666198 43666510 -183858068 - AluY SINE Alu -3 308 1 495 298 82 80 chr3 43666749 43667125 -183857453 + MLT2E LTR ERVL 252 628 0 337 333 92 30 chr3 43667522 43667957 -183856621 + L2 LINE L2 612 1073 -2241 2167 127 0 0 chr3 43669065 43669364 -183855214 - AluY SINE Alu -12 299 1 193 211 77 0 chr3 43669784 43669836 -183854742 + L2 LINE L2 2672 2727 -587 771 213 58 0 chr3 43670381 43670536 -183854042 + FRAM SINE Alu 1 161 -15 181 217 174 0 chr3 43670621 43670667 -183853911 + L2 LINE L2 3242 3295 -18 225 276 0 17 chr3 43671364 43671422 -183853156 - L2 LINE L2 -80 3192 3136 239 262 103 0 chr3 43672190 43672297 -183852281 + L1ME LINE L1 5696 5813 -308 29 60 0 0 chr3 43672536 43672586 -183851992 + AT_rich Low_complexity Low_complexity 1 50 0 932 258 64 39 chr3 43672961 43673244 -183851334 - MLT1H LTR MaLR -188 361 72 198 316 18 70 chr3 43673430 43673544 -183851034 + L2 LINE L2 2988 3095 -177 320 275 48 61 chr3 43674044 43674284 -183850294 - L1 LINE L1 -2752 3394 3158 307 313 33 71 chr3 43674306 43674517 -183850061 - L1ME3A LINE L1 -5 6165 5963 303 256 45 30 chr3 43674677 43674810 -183849768 - L1ME3A LINE L1 -1994 5814 5680 1443 209 29 85 chr3 43674826 43675353 -183849225 + Charlie4a DNA MER1_type 1 497 -11 1189 299 22 32 chr3 43675398 43675802 -183848776 - MLT1I LTR MaLR -4 405 6 398 277 59 28 chr3 43675803 43676116 -183848462 - L1ME3A LINE L1 -552 5618 5283 3073 247 69 38 chr3 43677741 43678825 -183845753 + L1MC/D LINE L1 264 1381 -5226 214 188 12 38 chr3 43678866 43678946 -183845632 + (TATAA)n Simple_repeat Simple_repeat 3 80 0 185 60 40 40 chr3 43678965 43679015 -183845563 + (TTATA)n Simple_repeat Simple_repeat 5 54 0 451 245 110 20 chr3 43679025 43679270 -183845308 + L1MC/D LINE L1 1288 1554 -4872 1334 258 71 48 chr3 43679270 43679293 -183845285 + MLT1E2 LTR MaLR 3 24 -602 2123 124 138 5 chr3 43679293 43679671 -183844907 - MSTA LTR MaLR 0 428 1 1334 258 71 48 chr3 43679671 43680257 -183844321 + MLT1E2 LTR MaLR 24 626 0 249 253 21 32 chr3 43680259 43680354 -183844224 + HAL1 LINE L1 1516 1609 -898 * 2528 232 23 33 chr3 43680330 43681286 -183843292 + L1MC/D LINE L1 4581 5523 -746 1054 277 126 14 chr3 43681299 43682075 -183842503 + L1ME3A LINE L1 4029 4891 -1255 2507 256 39 24 chr3 43682258 43683120 -183841458 + L1ME3A LINE L1 5285 6159 -11 26 50 0 0 chr3 43684452 43684492 -183840086 + AT_rich Low_complexity Low_complexity 1 40 0 351 0 0 0 chr3 43684687 43684726 -183839852 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 399 302 73 71 chr3 43684747 43685293 -183839285 + L1ME3A LINE L1 2737 3283 -3143 294 167 83 0 chr3 43685347 43685431 -183839147 + L1ME3A LINE L1 4140 4230 -2196 1927 155 35 62 chr3 43685465 43685621 -183838957 + MLT1B LTR MaLR 1 160 -230 1258 188 63 84 chr3 43685621 43686062 -183838516 + MSTB1 LTR MaLR 1 432 0 1927 155 35 62 chr3 43686062 43686306 -183838272 + MLT1B LTR MaLR 160 390 0 575 325 70 35 chr3 43686315 43687121 -183837457 + L1ME3A LINE L1 4293 5126 -1300 2719 125 19 0 chr3 43687402 43687835 -183836743 + L1MA5A LINE L1 5857 6297 0 668 251 128 80 chr3 43687941 43688567 -183836011 + L1ME3A LINE L1 5573 6228 -222 225 266 0 0 chr3 43689024 43689088 -183835490 + L1MEc LINE L1 3992 4055 -2371 4931 188 28 31 chr3 43689488 43689794 -183834784 - L1MC3 LINE L1 -7 7778 7473 2292 89 3 10 chr3 43689794 43690098 -183834480 - AluSg SINE Alu -8 302 1 4931 188 28 31 chr3 43690098 43690867 -183833711 - L1MC3 LINE L1 -312 7473 6706 455 184 88 61 chr3 43690875 43691022 -183833556 - MER106A DNA MER1_type -85 151 1 451 258 135 26 chr3 43691332 43691561 -183833017 + L1ME2 LINE L1 5902 6155 -9 696 240 157 29 chr3 43691575 43691893 -183832685 + MLT2C1 LTR ERVL 5 394 -3 231 294 65 25 chr3 43692566 43692767 -183831811 + L1MEc LINE L1 5471 5679 -747 1148 170 71 53 chr3 43693074 43693399 -183831179 - MER33 DNA MER1_type 0 324 1 345 287 87 59 chr3 43693501 43693787 -183830791 - L1M4 LINE L1 -2791 3355 3062 226 191 48 0 chr3 43693852 43693894 -183830684 - HAL1 LINE L1 -1137 1370 1327 252 341 9 14 chr3 43693921 43694049 -183830529 + CT-rich Low_complexity Low_complexity 1 213 0 245 265 34 14 chr3 43694697 43694844 -183829734 + A-rich Low_complexity Low_complexity 2 151 0 34 28 0 56 chr3 43694967 43695038 -183829540 + AT_rich Low_complexity Low_complexity 1 67 0 2198 237 55 38 chr3 43695043 43695135 -183829443 - MER77 LTR ERV1 0 605 516 4353 72 9 2 chr3 43695135 43695705 -183828873 - L1PA7 LINE L1 -6 6148 5575 2198 237 55 38 chr3 43695705 43696199 -183828379 - MER77 LTR ERV1 -89 516 9 183 139 0 0 chr3 43696209 43696245 -183828333 + (GAAAA)n Simple_repeat Simple_repeat 5 40 0 342 359 60 0 chr3 43697451 43697568 -183827010 + MIR3 SINE MIR 33 156 -52 414 290 76 7 chr3 43697618 43697763 -183826815 - MIR SINE MIR -17 245 91 1739 192 51 13 chr3 43698118 43698481 -183826097 + MLT2B2 LTR ERVL 1 397 0 411 217 54 11 chr3 43698833 43698925 -183825653 + L2 LINE L2 3213 3308 -5 2925 102 51 2 chr3 43699015 43699447 -183825131 - MLT2A2 LTR ERVL 0 453 1 323 246 120 7 chr3 43699924 43700066 -183824512 - MER103 DNA DNA -8 158 1 240 335 128 23 chr3 43700110 43700328 -183824250 + MIR SINE MIR 20 260 -2 227 188 42 0 chr3 43700774 43700822 -183823756 + L1MC4 LINE L1 6653 6702 -1340 246 250 71 0 chr3 43700823 43700907 -183823671 + L1MC4 LINE L1 6614 6703 -1339 257 192 0 0 chr3 43700933 43700985 -183823593 + L1MC4 LINE L1 6652 6703 -1339 244 284 54 0 chr3 43700985 43701059 -183823519 + (TATATG)n Simple_repeat Simple_repeat 2 79 0 227 286 71 0 chr3 43701059 43701143 -183823435 - L1MC4 LINE L1 -1339 6703 6614 229 255 0 82 chr3 43701145 43701243 -183823335 - L1MC4 LINE L1 -1339 6703 6614 247 250 0 0 chr3 43701259 43701323 -183823255 + L1MC4 LINE L1 6640 6703 -1339 281 206 0 0 chr3 43701337 43701400 -183823178 + L1MC4 LINE L1 6640 6702 -1340 285 253 23 0 chr3 43701401 43701488 -183823090 + L1MC4 LINE L1 6614 6702 -1340 225 247 35 0 chr3 43701460 43701545 -183823033 - L1MC4 LINE L1 -1340 6702 6615 * 428 192 10 0 chr3 43701551 43701650 -183822928 + (TA)n Simple_repeat Simple_repeat 1 100 0 229 188 0 0 chr3 43701653 43701701 -183822877 - L1MC4 LINE L1 -1343 6699 6652 366 23 0 0 chr3 43701859 43701902 -183822676 + (TG)n Simple_repeat Simple_repeat 2 44 0 1511 219 43 12 chr3 43701903 43702228 -183822350 + MER58B DNA MER1_type 7 341 0 714 279 50 57 chr3 43703145 43703601 -183820977 + LTR16A1 LTR ERVL 5 457 0 446 256 45 15 chr3 43704868 43705001 -183819577 + L1ME2 LINE L1 6001 6137 -27 21 0 0 0 chr3 43705062 43705083 -183819495 + AT_rich Low_complexity Low_complexity 1 21 0 458 204 194 0 chr3 43705206 43705314 -183819264 + FLAM_C SINE Alu 1 129 -14 1912 174 38 36 chr3 43706128 43706595 -183817983 - MLT2D LTR ERVL 0 414 2 563 210 40 0 chr3 43707101 43707225 -183817353 - LTR16A LTR ERVL 0 450 322 1993 179 10 28 chr3 43708828 43709225 -183815353 - MLT1B LTR MaLR 0 390 1 687 286 70 56 chr3 43709799 43710281 -183814297 - MLT1J LTR MaLR 0 511 23 2414 215 16 33 chr3 43710281 43710706 -183813872 + MER67A LTR ERV1 1 417 -126 1304 229 27 56 chr3 43710706 43711082 -183813496 + MLT1A1 LTR MaLR 1 365 0 2414 215 16 33 chr3 43711082 43711204 -183813374 + MER67A LTR ERV1 417 539 -4 1250 178 91 86 chr3 43711717 43711800 -183812778 + MLT1B LTR MaLR 6 87 -303 2410 126 62 7 chr3 43711800 43712206 -183812372 - MSTA LTR MaLR 0 428 1 1250 178 91 86 chr3 43712206 43712505 -183812073 + MLT1B LTR MaLR 87 390 0 722 207 7 14 chr3 43712677 43712817 -183811761 - MER20 DNA MER1_type -1 218 80 537 309 106 19 chr3 43712817 43713024 -183811554 + L2 LINE L2 2864 3088 -225 344 270 22 0 chr3 43713030 43713119 -183811459 - MER20 DNA MER1_type -127 92 2 443 311 88 5 chr3 43713938 43714131 -183810447 - MIR SINE MIR -53 209 1 1578 237 109 26 chr3 43714495 43715411 -183809167 - L1M4b LINE L1 -3547 3410 2475 22 56 0 0 chr3 43715456 43715492 -183809086 + AT_rich Low_complexity Low_complexity 1 36 0 2689 224 20 65 chr3 43715598 43716428 -183808150 - L1M4b LINE L1 -4588 2371 1602 2140 136 0 0 chr3 43716428 43716730 -183807848 - AluSg SINE Alu -2 308 7 2689 224 20 65 chr3 43716730 43717191 -183807387 - L1M4b LINE L1 -5357 1602 1122 1017 301 98 21 chr3 43717201 43717450 -183807128 + L2 LINE L2 2896 3187 -126 297 109 0 0 chr3 43717450 43717496 -183807082 + (TTA)n Simple_repeat Simple_repeat 3 48 0 1017 301 98 21 chr3 43717496 43717632 -183806946 + L2 LINE L2 3187 3311 -2 249 336 66 40 chr3 43718058 43718377 -183806201 + L2 LINE L2 2716 3059 -213 811 231 33 31 chr3 43718523 43718781 -183805797 - MLT1J2 LTR MaLR -177 269 1 208 259 259 12 chr3 43718871 43718956 -183805622 + L2 LINE L2 3151 3256 -16 246 98 39 20 chr3 43718967 43719018 -183805560 - MER116 DNA Mariner -13 67 16 257 383 61 0 chr3 43719335 43719450 -183805128 - L2 LINE L2 -8 3264 3143 242 330 107 0 chr3 43719463 43719566 -183805012 - L2 LINE L2 -607 2707 2594 219 261 0 0 chr3 43720882 43720928 -183803650 - MIR SINE MIR -66 142 97 43630 41 4 2 chr3 43721225 43727352 -183797226 + L1PA4 LINE L1 11 6147 -8 293 48 24 0 chr3 43727543 43727585 -183796993 - MADE1 DNA Mariner -2 78 36 1547 315 91 19 chr3 43727705 43728734 -183795844 - ERVL LTR ERVL -345 5140 4074 774 164 0 0 chr3 43729223 43729369 -183795209 + GA-rich Low_complexity Low_complexity 3 148 0 2298 104 0 0 chr3 43729653 43729951 -183794627 + AluSc SINE Alu 1 298 -11 306 329 0 0 chr3 43731873 43731958 -183792620 - MIR SINE MIR -13 249 165 207 319 66 22 chr3 43732887 43732978 -183791600 - L2 LINE L2 -9 3263 3169 186 367 44 11 chr3 43733201 43733291 -183791287 + MIR SINE MIR 1 93 -169 535 259 96 48 chr3 43733378 43733752 -183790826 + MLT1H LTR MaLR 70 586 -4 496 311 93 0 chr3 43733760 43733921 -183790657 + MIR SINE MIR 85 260 -2 422 301 62 14 chr3 43735160 43735306 -183789272 + MIR SINE MIR 73 225 -37 1956 144 100 3 chr3 43735307 43735627 -183788951 - MER83B LTR ERV1 0 378 28 2346 260 49 37 chr3 43735637 43736582 -183787996 - MER83B-int LTR ERV1 -11 8198 4527 614 294 61 0 chr3 43737545 43737790 -183786788 - MER83B-int LTR ERV1 -1957 2328 2069 639 348 49 20 chr3 43738221 43738787 -183785791 - MER83B-int LTR ERV1 -2070 6556 4549 2123 306 31 29 chr3 43739202 43740735 -183783843 - MER83B-int LTR ERV1 -1029 3925 2960 562 194 68 0 chr3 43740735 43740870 -183783708 - AluSg/x SINE Alu 0 313 172 328 324 37 62 chr3 43741081 43741535 -183783043 - MER83B-int LTR ERV1 -2188 2766 2324 261 298 11 0 chr3 43741670 43741764 -183782814 - MER83B-int LTR ERV1 -2772 2182 2088 1572 313 45 8 chr3 43741983 43742753 -183781825 - MER83B-int LTR ERV1 -3059 1895 1097 2697 291 63 27 chr3 43742879 43744067 -183780511 - MER83B-int LTR ERV1 -3304 981 12 1938 154 34 47 chr3 43744067 43744450 -183780128 - MER83B LTR ERV1 0 378 1 2297 174 24 2 chr3 43744660 43745074 -183779504 + MSTC LTR MaLR 6 428 0 23 92 0 0 chr3 43746173 43746238 -183778340 + AT_rich Low_complexity Low_complexity 1 65 0 21 36 0 0 chr3 43746583 43746611 -183777967 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 43746665 43746693 -183777885 + AT_rich Low_complexity Low_complexity 1 28 0 251 358 67 17 chr3 43746732 43746852 -183777726 + MIR3 SINE MIR 81 206 -2 573 24 36 0 chr3 43747182 43747265 -183777313 + (TAGA)n Simple_repeat Simple_repeat 2 87 0 1453 158 42 115 chr3 43747414 43747984 -183776594 - L1M4 LINE L1 -5111 1744 1219 686 216 36 54 chr3 43748265 43748487 -183776091 - L1M4 LINE L1 -5710 1149 932 327 152 15 15 chr3 43748944 43749010 -183775568 + L1PB1 LINE L1 129 194 -6669 9875 153 30 27 chr3 43749010 43750743 -183773835 + L1PB1 LINE L1 995 2720 -4142 2096 137 3 10 chr3 43750743 43751049 -183773529 + AluSx SINE Alu 5 308 -4 9875 153 30 27 chr3 43751049 43753422 -183771156 + L1PB1 LINE L1 2720 5278 -1584 1754 118 115 13 chr3 43753422 43753733 -183770845 + L1PB1 LINE L1 6521 6865 -2 27 0 0 0 chr3 43753733 43753760 -183770818 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr3 43754096 43754132 -183770446 + AT_rich Low_complexity Low_complexity 1 36 0 231 169 12 48 chr3 43755089 43755172 -183769406 + (TA)n Simple_repeat Simple_repeat 2 81 0 352 75 19 0 chr3 43755181 43755234 -183769344 + MLT2B1 LTR ERVL 467 520 0 3748 166 53 42 chr3 43755234 43755742 -183768836 - L1MC3 LINE L1 -217 7848 7326 195 100 0 0 chr3 43755742 43755772 -183768806 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 3748 166 53 42 chr3 43755772 43756112 -183768466 - L1MC3 LINE L1 -739 7326 6991 3739 215 28 10 chr3 43756116 43757770 -183766808 - L1MC3 LINE L1 -744 5682 4805 286 211 0 0 chr3 43757771 43757823 -183766755 - L1MC3 LINE L1 -6355 71 20 1642 208 0 0 chr3 43758145 43758433 -183766145 - AluJo SINE Alu -24 288 1 1990 168 112 11 chr3 43758627 43759073 -183765505 - L1MD1 LINE L1 -14 6228 5738 1438 184 52 96 chr3 43759071 43759138 -183765440 - L1MDa LINE L1 -4639 1901 1833 * 6578 169 27 56 chr3 43759138 43760843 -183763735 + L1PA15 LINE L1 4077 5776 -389 2363 100 7 0 chr3 43760843 43761153 -183763425 + AluSx SINE Alu 1 312 0 6578 169 27 56 chr3 43761153 43761530 -183763048 + L1PA15 LINE L1 5776 6162 -3 1438 184 52 96 chr3 43761530 43762064 -183762514 - L1MDa LINE L1 -4707 1833 1327 1588 172 114 65 chr3 43762070 43762501 -183762077 + LTR47A LTR ERVL 1 452 0 344 304 54 20 chr3 43762516 43762664 -183761914 + LTR47A-int LTR ERVL 16 168 -5175 205 182 0 0 chr3 43762902 43762935 -183761643 + (TATATG)n Simple_repeat Simple_repeat 6 38 0 2068 238 29 59 chr3 43763005 43763652 -183760926 + LTR49-int LTR ERV1 1851 2478 -3853 10495 171 57 43 chr3 43763675 43765530 -183759048 + LTR49-int LTR ERV1 2657 4485 -1846 2473 41 7 0 chr3 43765530 43765825 -183758753 + AluY SINE Alu 2 298 -13 10495 171 57 43 chr3 43765825 43766385 -183758193 + LTR49-int LTR ERV1 4485 4759 -1572 4278 117 8 3 chr3 43766385 43766994 -183757584 - LTR9 LTR ERV1 0 612 1 10495 171 57 43 chr3 43766994 43767776 -183756802 + LTR49-int LTR ERV1 4759 5529 -802 2311 225 46 39 chr3 43767776 43767875 -183756703 + MER72 LTR ERV1 1 98 -624 2157 118 3 19 chr3 43767875 43768189 -183756389 + AluSx SINE Alu 1 309 -3 2311 225 46 39 chr3 43768189 43768787 -183755791 + MER72 LTR ERV1 98 703 -19 944 221 99 97 chr3 43768806 43769290 -183755288 + LTR49-int LTR ERV1 5591 6075 -683 1373 181 168 24 chr3 43769302 43769683 -183754895 + LTR47A LTR ERVL 16 451 -1 651 156 18 12 chr3 43769684 43769851 -183754727 - L1MDa LINE L1 -5214 1326 1159 1016 147 0 13 chr3 43769877 43770034 -183754544 - AluSp SINE Alu -25 288 134 1057 190 53 23 chr3 43770034 43770297 -183754281 - L1MDa LINE L1 -5362 1178 908 2282 217 76 39 chr3 43770297 43770918 -183753660 - L1MDa LINE L1 -5888 652 9 446 232 68 64 chr3 43771006 43771222 -183753356 - L1ME3A LINE L1 -92 6070 5856 284 243 14 0 chr3 43771228 43771302 -183753276 + L1M3 LINE L1 5366 5440 -722 567 235 13 19 chr3 43771368 43771540 -183753038 + L1M3 LINE L1 5669 5848 -332 2258 131 0 0 chr3 43771629 43771941 -183752637 + AluSx SINE Alu 1 312 0 2054 132 0 3 chr3 43772446 43772733 -183751845 - AluSx SINE Alu -26 286 1 21 0 0 0 chr3 43773059 43773080 -183751498 + AT_rich Low_complexity Low_complexity 1 21 0 334 328 52 29 chr3 43774546 43774720 -183749858 + MIR SINE MIR 17 194 -68 318 320 119 14 chr3 43774742 43775020 -183749558 + L1MC4a LINE L1 5728 6034 -1774 295 344 96 6 chr3 43775207 43775364 -183749214 + MIR3 SINE MIR 30 200 -8 429 261 163 7 chr3 43775368 43775521 -183749057 - L2 LINE L2 0 3313 3137 208 333 118 7 chr3 43775525 43775660 -183748918 - L2 LINE L2 -254 3018 2869 522 260 28 4 chr3 43775986 43776134 -183748444 - MIR SINE MIR -63 145 39 2314 82 0 3 chr3 43776669 43776984 -183747594 + AluSc SINE Alu 1 309 0 191 314 137 24 chr3 43777266 43777390 -183747188 + MIR SINE MIR 125 262 0 283 386 59 25 chr3 43778362 43778598 -183745980 - L2 LINE L2 -43 3229 2986 440 299 30 8 chr3 43779087 43779221 -183745357 + L2 LINE L2 3167 3303 -10 624 172 234 7 chr3 43779495 43779640 -183744938 - MER45A DNA AcHobo 0 178 1 646 299 69 10 chr3 43779964 43780168 -183744410 + MIR SINE MIR 24 239 -23 186 295 101 86 chr3 43780219 43780358 -183744220 + MIR3 SINE MIR 12 152 -56 25 0 0 0 chr3 43780654 43780679 -183743899 + GC_rich Low_complexity Low_complexity 1 25 0 680 160 0 0 chr3 43781295 43781420 -183743158 + L1PA11 LINE L1 6030 6154 -20 222 280 204 19 chr3 43783576 43783733 -183740845 + MIR SINE MIR 67 252 -10 231 284 40 28 chr3 43784704 43784880 -183739698 - L1ME4a LINE L1 0 6121 5944 663 184 18 99 chr3 43785031 43785303 -183739275 - L1MC5 LINE L1 -44 7917 7668 385 172 0 0 chr3 43785512 43785576 -183739002 - MIR SINE MIR -76 132 69 230 191 21 0 chr3 43786576 43786623 -183737955 - L2 LINE L2 -1 3312 3265 350 277 188 0 chr3 43786700 43786801 -183737777 + MER5B DNA MER1_type 12 131 -47 319 310 71 13 chr3 43786931 43787170 -183737408 - L1ME4a LINE L1 -314 5807 5555 2795 231 76 18 chr3 43787190 43788349 -183736229 - L1ME3A LINE L1 -5 6148 4928 877 264 44 22 chr3 43788354 43788672 -183735906 - L1ME3A LINE L1 -1273 4856 4532 361 313 63 71 chr3 43788673 43788941 -183735637 - L1ME3A LINE L1 -5488 631 366 4380 174 45 10 chr3 43788991 43789864 -183734714 - L1MB3 LINE L1 0 6183 5281 866 304 120 53 chr3 43789864 43790873 -183733705 - L1ME4a LINE L1 -633 5488 4395 1915 170 55 3 chr3 43790873 43791220 -183733358 - MLT1A1 LTR MaLR 0 365 1 866 304 120 53 chr3 43791220 43791334 -183733244 - L1ME4a LINE L1 -1726 4395 4290 390 284 108 36 chr3 43791370 43791592 -183732986 + MIR SINE MIR 1 238 -24 519 290 35 76 chr3 43792017 43792413 -183732165 - L1ME4a LINE L1 -2144 4002 3623 293 336 78 46 chr3 43792828 43793200 -183731378 + L2 LINE L2 1958 2341 -973 1820 293 141 33 chr3 43793720 43794026 -183730552 + L2 LINE L2 38 310 -3004 1737 183 41 0 chr3 43794026 43794197 -183730381 - AluJo SINE Alu -10 302 113 318 50 0 0 chr3 43794197 43794237 -183730341 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 1737 183 41 0 chr3 43794237 43794355 -183730223 - AluJo SINE Alu -199 113 1 1820 293 141 33 chr3 43794355 43795068 -183729510 + L2 LINE L2 310 1167 -2147 692 315 54 84 chr3 43795082 43795196 -183729382 - L2 LINE L2 -129 3184 3068 1439 202 30 35 chr3 43795196 43795563 -183729015 + MLT1A1 LTR MaLR 1 365 0 692 315 54 84 chr3 43795563 43795835 -183728743 - L2 LINE L2 -245 3068 2789 1056 184 19 5 chr3 43795835 43796041 -183728537 - MER3 DNA MER1_type 0 209 1 692 315 54 84 chr3 43796041 43796303 -183728275 - L2 LINE L2 -524 2789 2559 1926 129 50 0 chr3 43796303 43796581 -183727997 + AluSx SINE Alu 1 292 -20 692 315 54 84 chr3 43796581 43796690 -183727888 - L2 LINE L2 -754 2559 2448 201 39 0 0 chr3 43796707 43796733 -183727845 + (TA)n Simple_repeat Simple_repeat 2 27 0 30 0 0 0 chr3 43798020 43798050 -183726528 + AT_rich Low_complexity Low_complexity 1 30 0 648 26 0 0 chr3 43799981 43800059 -183724519 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 1088 92 0 27 chr3 43800059 43800103 -183724475 + (GGAA)n Simple_repeat Simple_repeat 1 222 0 1088 92 0 27 chr3 43800103 43800288 -183724290 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 609 272 142 42 chr3 43800563 43800971 -183723607 - LTR16A1 LTR ERVL -8 449 1 197 119 24 0 chr3 43801902 43801944 -183722634 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 298 284 11 11 chr3 43802073 43802168 -183722410 - MIR3 SINE MIR -31 177 83 872 222 23 6 chr3 43802268 43802444 -183722134 - MER5A DNA MER1_type -10 179 1 640 217 29 29 chr3 43803361 43803536 -183721042 - MER45A DNA AcHobo 0 178 4 304 291 95 74 chr3 43803620 43803768 -183720810 - MIR3 SINE MIR -28 180 30 189 0 0 0 chr3 43803769 43803790 -183720788 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 283 270 22 11 chr3 43803977 43804066 -183720512 + GA-rich Low_complexity Low_complexity 1 90 0 331 364 0 14 chr3 43804071 43804214 -183720364 - MIR SINE MIR -31 231 91 223 242 30 0 chr3 43805086 43805152 -183719426 + T-rich Low_complexity Low_complexity 3 70 0 26 30 0 0 chr3 43805157 43805190 -183719388 + AT_rich Low_complexity Low_complexity 1 33 0 381 251 44 44 chr3 43805743 43805994 -183718584 + L1ME4a LINE L1 4394 4644 -1502 605 273 12 0 chr3 43806016 43806177 -183718401 + MIR SINE MIR 94 256 -6 328 259 76 84 chr3 43806194 43806537 -183718041 + L1ME4a LINE L1 5669 6008 -113 22 0 0 0 chr3 43806562 43806584 -183717994 + AT_rich Low_complexity Low_complexity 1 22 0 481 115 26 0 chr3 43806619 43806697 -183717881 + MADE1 DNA Mariner 1 80 0 1727 156 7 17 chr3 43807412 43807701 -183716877 - AluJo SINE Alu -15 297 12 833 278 68 7 chr3 43807895 43808176 -183716402 - LTR16A LTR ERVL -26 424 127 1023 236 18 0 chr3 43808315 43808535 -183716043 + MER58A DNA MER1_type 1 224 0 560 298 58 11 chr3 43808629 43808817 -183715761 + MIR SINE MIR 47 243 -19 370 231 58 29 chr3 43809312 43809415 -183715163 - MLT1J2 LTR MaLR 0 450 345 1335 243 62 71 chr3 43809415 43809950 -183714628 - MLT1E LTR MaLR 0 593 64 785 261 112 30 chr3 43810084 43810536 -183714042 + MLT1L LTR MaLR 7 540 -75 235 287 23 11 chr3 43812035 43812122 -183712456 - MIR SINE MIR -5 257 170 1030 260 177 40 chr3 43812626 43813179 -183711399 + L2 LINE L2 2304 2932 -382 315 277 50 50 chr3 43813466 43813585 -183710993 + MIR SINE MIR 24 142 -66 435 309 59 77 chr3 43813689 43814094 -183710484 - MLT1J LTR MaLR 0 511 114 244 264 35 49 chr3 43814412 43814556 -183710022 - L1M4 LINE L1 -1315 4831 4690 20778 70 21 0 chr3 43814608 43817452 -183707126 - L1P LINE L1 -3239 2907 3 24 32 0 0 chr3 43817617 43817648 -183706930 + AT_rich Low_complexity Low_complexity 1 31 0 341 294 99 28 chr3 43817666 43817877 -183706701 - L1M4 LINE L1 -1386 4760 4535 1382 190 4 12 chr3 43817878 43818131 -183706447 + AluJo SINE Alu 1 251 -61 207 88 0 0 chr3 43819128 43819162 -183705416 + (CA)n Simple_repeat Simple_repeat 2 35 0 615 297 110 67 chr3 43819232 43820465 -183704113 - L1M4 LINE L1 -2322 3824 2477 2328 89 3 0 chr3 43820465 43820768 -183703810 + AluSp SINE Alu 1 304 -9 615 297 110 67 chr3 43820768 43820936 -183703642 - L1M4 LINE L1 -3669 2477 2318 1088 222 55 18 chr3 43821063 43821607 -183702971 - LTR48B LTR ERV1 0 644 1 357 236 89 16 chr3 43821852 43821975 -183702603 + MIR SINE MIR 124 255 -7 2256 133 0 3 chr3 43822091 43822430 -183702148 + MER1B DNA MER1_type 1 338 -1 29 28 0 0 chr3 43823961 43823997 -183700581 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr3 43824146 43824183 -183700395 + AT_rich Low_complexity Low_complexity 1 37 0 329 309 39 22 chr3 43824857 43825057 -183699521 - MLT1J2 LTR MaLR -237 209 4 321 288 24 77 chr3 43825058 43825228 -183699350 + L1MC4a LINE L1 5754 5914 -1894 204 244 150 31 chr3 43825702 43825829 -183698749 + L2 LINE L2 3167 3308 -5 2329 203 22 90 chr3 43826079 43826976 -183697602 + L1MC4a LINE L1 6544 7361 -447 184 221 105 74 chr3 43828374 43828469 -183696109 + L2 LINE L2 3199 3296 -17 596 231 6 46 chr3 43828607 43828780 -183695798 - L2 LINE L2 0 3313 3148 1145 221 37 10 chr3 43828783 43829081 -183695497 + L1MC4 LINE L1 7403 7708 -334 327 254 14 14 chr3 43829354 43829496 -183695082 + L1MC4 LINE L1 7901 8042 0 1124 251 89 43 chr3 43829558 43830209 -183694369 - L2 LINE L2 -257 3056 2365 282 340 94 70 chr3 43831119 43831448 -183693130 - L2 LINE L2 0 3272 2936 2195 149 57 3 chr3 43831616 43831986 -183692592 - MLT1B LTR MaLR 0 390 1 345 302 111 60 chr3 43832226 43832478 -183692100 - L1M2a LINE L1 -5899 1269 1005 703 292 23 15 chr3 43833119 43833334 -183691244 - MIR SINE MIR -33 229 15 2296 104 0 3 chr3 43833395 43833693 -183690885 + AluSx SINE Alu 1 297 -15 663 265 22 16 chr3 43833756 43833941 -183690637 + MIR SINE MIR 70 255 -7 357 305 42 0 chr3 43834674 43834792 -183689786 - MIR3 SINE MIR -21 187 65 400 252 143 8 chr3 43835973 43836092 -183688486 + MIR SINE MIR 18 152 -110 * 2668 273 224 29 chr3 43836090 43837733 -183686845 + L2 LINE L2 1233 3195 -118 7540 26 2 6 chr3 43837737 43838768 -183685810 + L1PA3 LINE L1 5128 6155 0 25 0 0 0 chr3 43838780 43838805 -183685773 + AT_rich Low_complexity Low_complexity 1 25 0 216 209 0 23 chr3 43838858 43838901 -183685677 + MIR SINE MIR 26 67 -195 361 309 84 21 chr3 43839097 43839288 -183685290 + L1M4 LINE L1 3622 3824 -2322 3077 252 84 71 chr3 43839474 43840935 -183683643 + L2 LINE L2 1847 3309 -4 231 338 31 25 chr3 43841167 43841327 -183683251 + HAL1b LINE L1 1187 1347 -1 718 152 13 32 chr3 43841374 43841532 -183683046 - L1 LINE L1 -1464 4682 4528 939 128 53 58 chr3 43841580 43841768 -183682810 - MER20 DNA MER1_type -3 216 30 567 130 57 130 chr3 43841770 43841962 -183682616 - MER53 DNA DNA 0 189 12 247 360 0 0 chr3 43842082 43842168 -183682410 - MIR SINE MIR -157 105 20 383 266 81 8 chr3 43842305 43842429 -183682149 - MIR SINE MIR -93 169 37 255 319 0 69 chr3 43842875 43842991 -183681587 + L2 LINE L2 2992 3099 -173 587 237 151 7 chr3 43843281 43843433 -183681145 + MER5A DNA MER1_type 9 182 -7 473 291 46 13 chr3 43843620 43843771 -183680807 - MIR3 SINE MIR -48 160 5 282 264 91 33 chr3 43844880 43845001 -183679577 - MIR SINE MIR -50 212 85 214 318 45 11 chr3 43845832 43845920 -183678658 - MIR SINE MIR -63 199 109 210 143 0 0 chr3 43846197 43846232 -183678346 + (TG)n Simple_repeat Simple_repeat 1 35 0 252 0 0 0 chr3 43846493 43846521 -183678057 + (CA)n Simple_repeat Simple_repeat 2 29 0 4062 113 143 140 chr3 43847730 43849119 -183675459 - pTR5 LTR ERV1 0 2438 79 196 349 0 0 chr3 43849538 43849604 -183674974 + L2 LINE L2 3205 3270 -2 251 280 32 80 chr3 43849719 43849844 -183674734 - L2 LINE L2 0 3313 3195 1095 130 0 0 chr3 43850499 43850668 -183673910 + L1MA4 LINE L1 6131 6299 -1 2036 115 4 4 chr3 43851457 43851735 -183672843 + AluSx SINE Alu 1 278 -34 251 194 81 32 chr3 43853038 43853100 -183671478 + MER103 DNA DNA 82 146 -20 1095 158 0 12 chr3 43853153 43853317 -183671261 - FRAM SINE Alu -21 155 1 570 229 9 0 chr3 43853377 43853482 -183671096 - FLAM_A SINE Alu -32 110 5 437 285 145 0 chr3 43853507 43853693 -183670885 - L3 LINE CR1 -191 1386 1174 2213 104 3 0 chr3 43853762 43854125 -183670453 + AluSx SINE Alu 1 364 0 181 250 154 0 chr3 43854299 43854351 -183670227 + L3 LINE CR1 1081 1140 -437 338 0 24 0 chr3 43854597 43854639 -183669939 + (TG)n Simple_repeat Simple_repeat 2 44 0 1067 205 135 46 chr3 43854958 43855328 -183669250 + LTR16A1 LTR ERVL 55 457 0 214 364 0 11 chr3 43856750 43856838 -183667740 + CT-rich Low_complexity Low_complexity 5 91 0 297 188 31 0 chr3 43857269 43857333 -183667245 + AluSp/q SINE Alu 236 301 -2 320 261 36 27 chr3 43857619 43857730 -183666848 - MIR SINE MIR -39 223 112 1704 191 29 29 chr3 43859159 43859536 -183665042 - MER74C LTR ERVL -83 377 1 2330 102 0 0 chr3 43859546 43859850 -183664728 + AluSg SINE Alu 1 304 -6 416 250 86 0 chr3 43859890 43860006 -183664572 + MER117 DNA MER1_type 16 141 -56 312 257 104 49 chr3 43860307 43860451 -183664127 + L2 LINE L2 3159 3310 -3 1101 246 54 54 chr3 43861446 43861796 -183662782 + MLT1H LTR MaLR 1 350 -199 293 264 57 36 chr3 43862756 43862949 -183661629 + HAL1 LINE L1 1114 1310 -1197 198 103 0 0 chr3 43863069 43863098 -183661480 + (CA)n Simple_repeat Simple_repeat 2 30 0 2199 112 0 0 chr3 43863423 43863717 -183660861 + AluSc SINE Alu 1 294 -15 361 277 0 0 chr3 43864270 43864364 -183660214 - MARNA DNA Mariner -44 542 449 2053 89 0 0 chr3 43865224 43865481 -183659097 + AluSc SINE Alu 1 257 -52 553 294 32 18 chr3 43865742 43865960 -183658618 + MARNA DNA Mariner 143 363 -223 2451 89 0 6 chr3 43865968 43866283 -183658295 - AluSp SINE Alu 0 313 1 355 266 63 35 chr3 43868330 43868473 -183656105 - MIR SINE MIR -110 152 6 234 0 0 0 chr3 43868862 43868888 -183655690 + (T)n Simple_repeat Simple_repeat 1 26 0 870 78 0 26 chr3 43869245 43869360 -183655218 - L1PA15 LINE L1 -15 6150 6039 345 284 158 0 chr3 43869559 43869686 -183654892 + MIR SINE MIR 81 227 -35 6943 107 17 18 chr3 43869888 43870995 -183653583 - L1MA5A LINE L1 0 6297 5189 256 57 0 0 chr3 43871172 43871207 -183653371 - L1MA5A LINE L1 -963 5183 5149 567 0 0 0 chr3 43871673 43871736 -183652842 + (CA)n Simple_repeat Simple_repeat 2 64 0 640 322 57 4 chr3 43872677 43872904 -183651674 - LTR16A LTR ERVL -40 410 172 556 240 10 78 chr3 43873462 43873666 -183650912 - MLT1H LTR MaLR -329 220 31 1357 247 131 14 chr3 43874592 43875074 -183649504 + MLT1H LTR MaLR 12 549 0 273 218 0 0 chr3 43875105 43875160 -183649418 + MLT1I LTR MaLR 54 108 -301 236 234 0 31 chr3 43875400 43875464 -183649114 + MLT1I LTR MaLR 348 409 0 380 265 110 55 chr3 43876035 43876235 -183648343 - MIR SINE MIR -39 223 13 1961 86 31 0 chr3 43877106 43877361 -183647217 + AluSp SINE Alu 1 263 -50 315 0 0 0 chr3 43877370 43877405 -183647173 + (TAA)n Simple_repeat Simple_repeat 2 36 0 451 14 14 81 chr3 43877542 43877616 -183646962 - L1PA3 LINE L1 0 6155 6087 2960 77 29 0 chr3 43877817 43878193 -183646385 - L1PA10 LINE L1 -6 6162 5776 573 237 103 42 chr3 43878193 43878573 -183646005 - L1MCa LINE L1 -3445 2684 2282 410 232 81 72 chr3 43878658 43878946 -183645632 - L1MCa LINE L1 -3862 2267 1945 441 291 99 26 chr3 43879167 43879510 -183645068 - L1MCa LINE L1 -4580 1730 1363 802 297 50 68 chr3 43879621 43879665 -183644913 - L1MCa LINE L1 -4925 1194 1151 1837 177 3 7 chr3 43879665 43879970 -183644608 - AluJb SINE Alu -6 306 3 802 297 50 68 chr3 43879970 43880643 -183643935 - L1MCa LINE L1 -4968 1151 490 332 188 0 12 chr3 43880650 43880730 -183643848 + CT-rich Low_complexity Low_complexity 2 80 0 310 314 0 57 chr3 43880994 43881169 -183643409 - L1MCa LINE L1 -5949 170 6 191 200 50 0 chr3 43882387 43882427 -183642151 + MIR SINE MIR 107 148 -114 222 171 29 114 chr3 43882442 43882512 -183642066 + L3 LINE CR1 1507 1570 -7 358 260 52 10 chr3 43882528 43882624 -183641954 - MER5A DNA MER1_type -77 112 13 1005 271 44 39 chr3 43882834 43883218 -183641360 - L2 LINE L2 -729 2585 2200 419 278 30 8 chr3 43883207 43883340 -183641238 - MIR SINE MIR -56 206 71 * 2740 23 0 7 chr3 43884265 43884575 -183640003 - AluY SINE Alu -3 308 1 24 32 0 0 chr3 43884659 43884690 -183639888 + AT_rich Low_complexity Low_complexity 1 31 0 195 42 0 0 chr3 43884944 43884968 -183639610 + (TA)n Simple_repeat Simple_repeat 1 24 0 222 195 0 0 chr3 43885829 43885870 -183638708 + (CAA)n Simple_repeat Simple_repeat 3 43 0 695 267 106 17 chr3 43885878 43886114 -183638464 - MIR SINE MIR -3 259 3 442 244 104 0 chr3 43886163 43886278 -183638300 - MER63 DNA MER1_type -81 755 3 324 0 0 0 chr3 43886377 43886413 -183638165 + (TA)n Simple_repeat Simple_repeat 2 37 0 1569 183 37 0 chr3 43886413 43886713 -183637865 - AluSx SINE Alu -1 311 1 24 0 0 0 chr3 43886721 43886745 -183637833 + AT_rich Low_complexity Low_complexity 1 24 0 989 194 21 31 chr3 43888383 43888574 -183636004 - MER5A DNA MER1_type 0 189 1 217 289 26 40 chr3 43888693 43888769 -183635809 - MER5B DNA MER1_type -103 75 1 257 346 52 39 chr3 43889145 43889298 -183635280 - L2 LINE L2 -6 3266 3112 230 267 108 51 chr3 43889843 43890038 -183634540 - L2 LINE L2 -1056 2258 2053 773 203 0 0 chr3 43890213 43890336 -183634242 + FLAM_A SINE Alu 1 123 -10 204 238 48 0 chr3 43890377 43890419 -183634159 - L2 LINE L2 -19 3294 3251 233 288 24 24 chr3 43891124 43891249 -183633329 + (CCTA)n Simple_repeat Simple_repeat 4 128 0 315 300 27 18 chr3 43893019 43893129 -183631449 - MIR3 SINE MIR -94 114 4 494 276 103 61 chr3 43894283 43894491 -183630087 - L3 LINE CR1 -242 1335 1108 1735 173 14 0 chr3 43894491 43894774 -183629804 - AluJo SINE Alu -25 287 1 494 276 103 61 chr3 43894774 43894876 -183629702 - L3 LINE CR1 -469 1108 1012 359 256 23 0 chr3 43894982 43895068 -183629510 + MER81 DNA DNA 1 88 -26 348 182 61 0 chr3 43895062 43895128 -183629450 + MER81 DNA DNA 44 113 -1 * 568 325 98 27 chr3 43896963 43897606 -183626972 + L2 LINE L2 2587 3270 -43 265 286 48 29 chr3 43897697 43897802 -183626776 - MIR3 SINE MIR -13 195 89 22 35 0 0 chr3 43898343 43898372 -183626206 + AT_rich Low_complexity Low_complexity 1 29 0 259 245 19 88 chr3 43898935 43899094 -183625484 + HAL1 LINE L1 50 197 -2310 886 244 9 55 chr3 43899104 43899432 -183625146 + HAL1 LINE L1 1498 1810 -697 722 180 0 43 chr3 43899516 43899655 -183624923 + AluSq/x SINE Alu 1 133 -180 1919 141 25 0 chr3 43899657 43899959 -183624619 + AluSx SINE Alu 1 309 0 386 320 104 4 chr3 43899966 43900216 -183624362 + HAL1 LINE L1 1936 2210 -297 418 296 187 0 chr3 43900283 43900513 -183624065 + HAL1 LINE L1 2230 2502 -5 22 35 0 0 chr3 43900953 43900982 -183623596 + AT_rich Low_complexity Low_complexity 1 29 0 232 217 29 0 chr3 43901152 43901221 -183623357 + HAL1 LINE L1 2058 2128 -379 203 273 0 0 chr3 43903404 43903448 -183621130 + (CA)n Simple_repeat Simple_repeat 2 45 0 191 350 10 68 chr3 43903835 43903938 -183620640 - MIR3 SINE MIR -111 97 1 209 265 29 0 chr3 43904709 43904777 -183619801 + (TA)n Simple_repeat Simple_repeat 1 70 0 232 319 155 17 chr3 43904793 43904909 -183619669 + MIR3 SINE MIR 10 141 -67 2758 74 6 0 chr3 43905133 43905484 -183619094 + THE1A LTR MaLR 3 355 0 11598 86 11 9 chr3 43905484 43907061 -183617517 + THE1A-int LTR MaLR 1 1580 0 2757 76 3 0 chr3 43907061 43907415 -183617163 + THE1A LTR MaLR 1 355 0 969 168 21 0 chr3 43907672 43907862 -183616716 + L1PB1 LINE L1 2 195 -6668 11900 186 28 55 chr3 43907867 43909663 -183614915 + L1PB1 LINE L1 1111 2954 -3913 264 30 0 0 chr3 43909663 43909696 -183614882 + (CA)n Simple_repeat Simple_repeat 2 34 0 11900 186 28 55 chr3 43909696 43912432 -183612146 + L1PB1 LINE L1 2954 5703 -1164 2924 85 44 21 chr3 43912432 43912866 -183611712 + MLT2A1 LTR ERVL 1 444 0 11900 186 28 55 chr3 43912866 43914001 -183610577 + L1PB1 LINE L1 5703 6867 0 6081 31 3 5 chr3 43914027 43914798 -183609780 + L1PA4 LINE L1 5254 6022 -133 518 115 0 23 chr3 43914924 43915011 -183609567 + AluJ/FRAM SINE Alu 221 305 -7 481 286 76 50 chr3 43915012 43915945 -183608633 + L1 LINE L1 2888 3878 -2268 2193 131 3 10 chr3 43917316 43917630 -183606948 - AluSx SINE Alu 0 312 1 508 189 11 108 chr3 43918406 43918591 -183605987 - MER112 DNA MER1_type -20 240 74 397 268 80 0 chr3 43918953 43919065 -183605513 + MIR SINE MIR 124 244 -18 196 419 0 0 chr3 43919091 43919165 -183605413 - MIR SINE MIR -169 93 20 222 284 0 25 chr3 43919560 43919641 -183604937 + CT-rich Low_complexity Low_complexity 1 79 0 805 217 57 0 chr3 43919835 43920010 -183604568 - MER5A DNA MER1_type -2 187 3 22439 100 12 2 chr3 43920121 43923584 -183600994 - L1PA7 LINE L1 -1284 4862 1365 6964 55 10 3 chr3 43923584 43924859 -183599719 + L1PA7 LINE L1 4868 6148 -6 26 0 0 0 chr3 43924859 43924885 -183599693 + AT_rich Low_complexity Low_complexity 1 26 0 325 295 84 32 chr3 43925060 43925250 -183599328 + MIR SINE MIR 48 247 -15 249 281 161 25 chr3 43927474 43927673 -183596905 + MIR SINE MIR 31 256 -6 241 465 0 0 chr3 43927761 43927832 -183596746 + A-rich Low_complexity Low_complexity 1 71 0 351 256 14 87 chr3 43928283 43928423 -183596155 + MIR SINE MIR 34 163 -63 328 282 55 0 chr3 43928447 43928557 -183596021 + L2 LINE L2 2729 2844 -470 285 29 0 0 chr3 43928566 43928600 -183595978 + (T)n Simple_repeat Simple_repeat 1 34 0 410 311 106 35 chr3 43928747 43929030 -183595548 + L2 LINE L2 3011 3313 0 2102 109 0 11 chr3 43929117 43929432 -183595146 + AluSx SINE Alu 1 312 0 1202 150 27 139 chr3 43929679 43930340 -183594238 - MER4A LTR ERV1 0 679 66 2314 105 7 0 chr3 43930340 43930646 -183593932 - AluSq SINE Alu -5 308 1 1202 150 27 139 chr3 43930646 43930706 -183593872 - MER4A LTR ERV1 -613 66 1 393 319 31 31 chr3 43931003 43931163 -183593415 + MIR3 SINE MIR 4 163 -45 1659 176 4 18 chr3 43931732 43932011 -183592567 + AluJo SINE Alu 1 275 -37 207 0 0 0 chr3 43932011 43932034 -183592544 + (TCTA)n Simple_repeat Simple_repeat 1 23 0 369 206 0 0 chr3 43932210 43932312 -183592266 + (CA)n Simple_repeat Simple_repeat 1 102 0 237 238 32 16 chr3 43933437 43933500 -183591078 + L3b LINE CR1 1283 1346 -237 237 220 77 66 chr3 43933752 43933843 -183590735 - MIR3 SINE MIR -111 97 6 1191 236 26 21 chr3 43934041 43934418 -183590160 - LTR37A LTR ERV1 -1 425 47 189 250 19 19 chr3 43934534 43934586 -183589992 - MIR SINE MIR -121 141 90 272 262 135 43 chr3 43934587 43934728 -183589850 + MER5A DNA MER1_type 36 189 0 269 296 37 25 chr3 43934728 43934808 -183589770 - MIR SINE MIR -105 103 23 1070 185 39 10 chr3 43936179 43936384 -183588194 + AluJo SINE Alu 1 211 -101 872 100 8 0 chr3 43986388 43986518 -183538060 + LTR12 LTR ERV1 362 492 -222 * 3047 146 12 40 chr3 43986511 43987194 -183537384 - pTR5 LTR ERV1 -1038 1400 737 453 204 0 0 chr3 43987573 43987666 -183536912 - L1MB5 LINE L1 -8 6166 6074 3115 133 40 0 chr3 43987692 43988211 -183536367 - L1MA2 LINE L1 0 6304 5765 1957 141 3 3 chr3 43988554 43988844 -183535734 + AluSx SINE Alu 1 290 -22 198 301 102 61 chr3 43989513 43989709 -183534869 + MIR SINE MIR 19 222 -40 209 116 0 47 chr3 43992682 43992725 -183531853 + (TTTC)n Simple_repeat Simple_repeat 2 42 0 606 221 15 0 chr3 43992737 43992868 -183531710 - AluJb SINE Alu -1 311 179 214 158 0 0 chr3 43993139 43993177 -183531401 + CT-rich Low_complexity Low_complexity 1 38 0 252 244 24 12 chr3 43995767 43995849 -183528729 - L1MC4 LINE L1 -5 8037 7955 21009 43 6 9 chr3 43995885 43999317 -183525261 + L1HS LINE L1 2621 6034 -121 212 203 40 54 chr3 43999479 43999553 -183525025 - MIR SINE MIR -59 203 131 619 198 42 70 chr3 44001746 44001885 -183522693 + MLT1G1 LTR MaLR 1 126 -429 1720 166 83 56 chr3 44001885 44002330 -183522248 - MSTB2 LTR MaLR 0 457 1 619 198 42 70 chr3 44002330 44002472 -183522106 + MLT1G1 LTR MaLR 126 271 -284 653 218 9 2 chr3 44002491 44002644 -183521934 + MLT1G1 LTR MaLR 431 595 0 429 192 10 20 chr3 44003812 44003911 -183520667 + MER103 DNA DNA 23 120 -46 309 323 108 16 chr3 44004983 44005169 -183519409 - L1M4 LINE L1 -3243 2903 2701 2221 117 17 0 chr3 44005247 44005547 -183519031 - AluSx SINE Alu -7 305 1 540 276 25 25 chr3 44006126 44006289 -183518289 - MIR SINE MIR -49 213 51 1133 187 60 26 chr3 44007314 44007655 -183516923 + MSTD LTR MaLR 4 396 0 1047 182 0 0 chr3 44008867 44009032 -183515546 + FRAM SINE Alu 1 165 -11 565 179 26 0 chr3 44009399 44009516 -183515062 + MLT1D LTR MaLR 386 505 0 243 188 0 0 chr3 44009859 44009907 -183514671 + (CA)n Simple_repeat Simple_repeat 2 49 0 279 288 0 0 chr3 44010853 44010926 -183513652 + L2 LINE L2 2684 2756 -558 398 242 176 7 chr3 44013023 44013172 -183511406 + MIR SINE MIR 61 233 -29 28 29 0 0 chr3 44013258 44013293 -183511285 + AT_rich Low_complexity Low_complexity 1 35 0 186 366 24 0 chr3 44013634 44013716 -183510862 - MIR SINE MIR -77 185 102 582 294 20 10 chr3 44014293 44014494 -183510084 + MLT2F LTR ERVL 9 211 -452 466 274 146 49 chr3 44014521 44014871 -183509707 + MLT2F LTR ERVL 280 663 0 724 286 53 0 chr3 44014871 44015042 -183509536 - MIR SINE MIR -60 202 23 264 226 0 0 chr3 44015288 44015350 -183509228 + (CA)n Simple_repeat Simple_repeat 1 62 0 308 214 191 0 chr3 44016987 44017076 -183507502 + MLT1J1 LTR MaLR 57 162 -284 3845 192 22 1 chr3 44017394 44018159 -183506419 - L1MD1 LINE L1 -18 6618 5838 391 133 0 0 chr3 44018175 44018250 -183506328 - L1MA4A LINE L1 -8 6295 6221 3804 253 62 17 chr3 44018263 44019972 -183504606 - L1MD1 LINE L1 -744 5796 4027 1590 178 48 17 chr3 44019976 44020268 -183504310 - AluJo SINE Alu -6 306 6 327 315 28 0 chr3 44020382 44020490 -183504088 + L1M4 LINE L1 3258 3368 -2778 288 269 0 0 chr3 44020506 44020599 -183503979 + L1M4 LINE L1 3334 3426 -2720 355 230 0 0 chr3 44020602 44020689 -183503889 + L1M4 LINE L1 3566 3652 -2494 262 203 0 0 chr3 44020767 44020831 -183503747 - L1MD1 LINE L1 -2887 3653 3590 6664 68 25 0 chr3 44020833 44022040 -183502538 - L1PA7 LINE L1 0 6154 4956 4381 72 0 0 chr3 44022048 44022655 -183501923 + L1P LINE L1 1538 2144 -4002 3533 115 0 0 chr3 44022657 44023205 -183501373 + L1P LINE L1 2230 2777 -3369 2579 246 31 23 chr3 44023201 44023340 -183501238 - L1MD1 LINE L1 -2959 3581 3445 * 2156 123 0 7 chr3 44023340 44023640 -183500938 - AluSc SINE Alu -7 302 5 2579 246 31 23 chr3 44023640 44024464 -183500114 - L1MD1 LINE L1 -3095 3445 2610 2893 252 76 26 chr3 44024466 44025613 -183498965 - L1MD1 LINE L1 -5243 1297 17 1638 224 19 17 chr3 44025734 44026095 -183498483 - MLT1A1 LTR MaLR 0 365 4 6722 204 17 89 chr3 44026096 44026674 -183497904 - MLT1A1-int LTR MaLR -21 1714 1096 2421 124 22 0 chr3 44026674 44027030 -183497548 - THE1B LTR MaLR 0 364 1 6722 204 17 89 chr3 44027030 44028298 -183496280 - MLT1A1-int LTR MaLR -639 1096 1 1876 198 20 3 chr3 44028298 44028656 -183495922 - MLT1A1 LTR MaLR 0 365 2 281 313 15 53 chr3 44029121 44029178 -183495400 + MIR SINE MIR 135 193 -69 1366 174 23 103 chr3 44029178 44029574 -183495004 + MLT1A1 LTR MaLR 2 365 0 281 313 15 53 chr3 44029574 44029647 -183494931 + MIR SINE MIR 193 260 -2 535 264 101 0 chr3 44031407 44031555 -183493023 + Tigger5 DNA MER2_type 1 163 -2160 790 153 6 80 chr3 44031584 44031699 -183492879 + Tigger5 DNA MER2_type 2173 2274 -49 6627 116 26 25 chr3 44031699 44032769 -183491809 - MER11C LTR ERVK 0 1071 1 790 153 6 80 chr3 44032769 44032816 -183491762 + Tigger5 DNA MER2_type 2274 2323 0 509 185 8 0 chr3 44033961 44034080 -183490498 + (TA)n Simple_repeat Simple_repeat 2 121 0 784 316 100 34 chr3 44034356 44034824 -183489754 + L2 LINE L2 325 823 -2491 18609 183 24 72 chr3 44035135 44038269 -183486309 + L1MA2 LINE L1 16 3297 -4426 964 156 0 0 chr3 44038269 44038410 -183486168 + AluJb SINE Alu 1 141 -171 18609 183 24 72 chr3 44038410 44038753 -183485825 + L1MA2 LINE L1 3297 3655 -4068 2004 85 89 3 chr3 44038753 44039035 -183485543 + AluSq SINE Alu 1 306 -7 18609 183 24 72 chr3 44039035 44043524 -183481054 + L1MA2 LINE L1 3655 7723 0 2874 144 30 10 chr3 44043542 44044043 -183480535 - Tigger3b DNA MER2_type -681 550 40 207 69 0 0 chr3 44044044 44044073 -183480505 + (GA)n Simple_repeat Simple_repeat 2 30 0 304 298 81 16 chr3 44044227 44044351 -183480227 - MIR SINE MIR -55 207 76 183 339 0 32 chr3 44044419 44044481 -183480097 + L2 LINE L2 3232 3291 -22 1218 143 221 3 chr3 44045575 44045882 -183478696 - MLT1A2 LTR MaLR 0 374 1 333 239 35 35 chr3 44045888 44046001 -183478577 - MER117 DNA MER1_type -84 113 1 742 289 168 10 chr3 44047277 44047671 -183476907 - LTR16A1 LTR ERVL 0 457 2 262 214 114 53 chr3 44048280 44048411 -183476167 + MIR SINE MIR 121 259 -3 573 262 148 0 chr3 44050074 44050257 -183474321 + MIR SINE MIR 48 257 -5 326 219 49 122 chr3 44050721 44050885 -183473693 + MLT1I LTR MaLR 232 383 -26 514 278 17 23 chr3 44052308 44052484 -183472094 - MIR SINE MIR 0 262 88 23 33 0 0 chr3 44052744 44052774 -183471804 + AT_rich Low_complexity Low_complexity 1 30 0 441 128 256 15 chr3 44053050 44053183 -183471395 - MER103 DNA DNA -1 165 1 236 196 65 14 chr3 44053310 44053448 -183471130 + (TA)n Simple_repeat Simple_repeat 1 145 0 186 167 0 0 chr3 44053460 44053496 -183471082 + (CATATA)n Simple_repeat Simple_repeat 1 36 0 319 315 0 0 chr3 44053499 44053588 -183470990 - L1MC4 LINE L1 -1339 6703 6615 305 333 0 0 chr3 44053517 44053607 -183470971 + L1MC4 LINE L1 6614 6703 -1339 * 560 245 118 18 chr3 44053732 44054084 -183470494 + LTR52 LTR ERVL 1 421 0 203 91 121 0 chr3 44054115 44054148 -183470430 + L2 LINE L2 3265 3301 -12 246 284 30 67 chr3 44054882 44055016 -183469562 + LTR16A1 LTR ERVL 1 129 -328 400 294 7 28 chr3 44055407 44055550 -183469028 + LTR67 LTR ERVL 6 145 -412 548 320 128 6 chr3 44056232 44056551 -183468027 + L2 LINE L2 2007 2364 -950 23 33 0 0 chr3 44056666 44056696 -183467882 + AT_rich Low_complexity Low_complexity 1 30 0 6111 139 29 4 chr3 44057276 44058682 -183465896 + L1MA3 LINE L1 4858 6299 -6 232 286 25 17 chr3 44058713 44058832 -183465746 + L1M4 LINE L1 2161 2280 -3866 201 268 0 18 chr3 44059600 44059656 -183464922 + (TATATG)n Simple_repeat Simple_repeat 3 57 0 191 170 21 0 chr3 44059672 44059719 -183464859 + (TA)n Simple_repeat Simple_repeat 2 49 0 284 302 160 12 chr3 44060188 44060357 -183464221 - MIR SINE MIR -64 198 5 323 239 0 15 chr3 44061433 44061500 -183463078 + MIR SINE MIR 41 106 -102 1760 249 64 40 chr3 44062765 44063435 -183461143 - L1ME3A LINE L1 -7 6163 5478 26 0 0 0 chr3 44063657 44063683 -183460895 + AT_rich Low_complexity Low_complexity 1 26 0 21 82 0 0 chr3 44064016 44064065 -183460513 + AT_rich Low_complexity Low_complexity 1 49 0 313 324 77 0 chr3 44064140 44064347 -183460231 + L1M4 LINE L1 3729 3951 -2195 490 349 64 32 chr3 44064362 44064929 -183459649 + L1M4 LINE L1 3946 4543 -1603 317 172 0 106 chr3 44065067 44065265 -183459313 + G-rich Low_complexity Low_complexity 1 177 0 240 130 0 0 chr3 44065286 44065332 -183459246 + (G)n Simple_repeat Simple_repeat 1 46 0 303 122 0 0 chr3 44065387 44065436 -183459142 + L1PA3 LINE L1 6104 6152 -3 349 288 41 34 chr3 44065702 44065848 -183458730 - MIR3 SINE MIR -18 190 44 480 251 35 41 chr3 44066828 44066999 -183457579 + MER5B DNA MER1_type 2 171 -7 3980 199 11 55 chr3 44068612 44068749 -183455829 + L1 LINE L1 3960 4101 -2045 2613 36 0 0 chr3 44068749 44069055 -183455523 + L1PA3 LINE L1 5845 6152 -3 3980 199 11 55 chr3 44069055 44069995 -183454583 + L1 LINE L1 4101 4990 -1156 4566 29 2 0 chr3 44069998 44070557 -183454021 + L1PA4 LINE L1 5460 6019 -136 315 274 143 57 chr3 44072061 44072236 -183452342 - MIR SINE MIR -70 192 3 317 336 26 4 chr3 44073191 44073417 -183451161 - MER46C DNA MER2_type -8 330 100 1593 83 0 0 chr3 44074863 44075079 -183449499 - L1PA5 LINE L1 0 6154 5939 1277 121 6 0 chr3 44075182 44075364 -183449214 + AluSg/x SINE Alu 122 304 -8 235 159 0 0 chr3 44075453 44075497 -183449081 + L1MC3 LINE L1 7721 7764 -21 193 359 48 29 chr3 44075509 44075612 -183448966 + MIR SINE MIR 40 144 -64 355 245 96 0 chr3 44075736 44075830 -183448748 + MER5A DNA MER1_type 10 112 -77 195 98 24 98 chr3 44075812 44075853 -183448725 - MER5A DNA MER1_type -108 81 44 * 3648 133 46 59 chr3 44076159 44076688 -183447890 - LTR8 LTR ERV1 0 691 172 3805 65 21 0 chr3 44076688 44077168 -183447410 + LTR2B LTR ERV1 1 490 0 3648 133 46 59 chr3 44077168 44077338 -183447240 - LTR8 LTR ERV1 -519 172 1 539 238 75 0 chr3 44077907 44078054 -183446524 - MER103 DNA DNA -2 164 7 7708 21 2 0 chr3 44078140 44079055 -183445523 + L1PA3 LINE L1 5236 6152 -3 253 276 141 35 chr3 44079117 44079316 -183445262 + L1M3c LINE L1 187 406 -5907 5173 237 39 59 chr3 44079885 44080988 -183443590 + L1M3c LINE L1 805 1928 -4454 3958 198 17 0 chr3 44080988 44081709 -183442869 - MER44D DNA MER2_type 0 605 1 5173 237 39 59 chr3 44081709 44081805 -183442773 + L1M3c LINE L1 1928 2024 -4358 2041 139 126 8 chr3 44081805 44082187 -183442391 - MSTA LTR MaLR 0 428 2 8777 169 33 5 chr3 44082188 44083794 -183440784 - MSTA-int LTR MaLR 0 1651 1 2136 130 138 5 chr3 44083794 44084172 -183440406 - MSTA LTR MaLR 0 428 1 5173 237 39 59 chr3 44084172 44086795 -183437783 + L1M3c LINE L1 2023 4695 -1687 455 122 12 0 chr3 44086795 44086875 -183437703 + L1PB1 LINE L1 6061 6143 -8 189 0 0 0 chr3 44086879 44086900 -183437678 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 5173 237 39 59 chr3 44086900 44086971 -183437607 + L1M3c LINE L1 4698 4769 -1613 863 145 0 179 chr3 44086971 44087206 -183437372 + 7SK RNA RNA 1 193 0 5173 237 39 59 chr3 44087206 44087830 -183436748 + L1M3c LINE L1 4769 5151 -1231 3034 229 104 12 chr3 44087847 44089145 -183435433 + L1M4 LINE L1 3238 4768 -1378 3549 221 40 19 chr3 44089145 44090367 -183434211 + L1MC/D LINE L1 4207 5446 -743 1182 293 66 6 chr3 44090905 44091376 -183433202 + LTR33 LTR ERVL 23 521 0 1686 146 20 37 chr3 44092309 44092658 -183431920 + L1MC2 LINE L1 5989 6331 -13 816 267 117 29 chr3 44093376 44093822 -183430756 + MER90 LTR ERV1 126 610 -4 468 345 39 12 chr3 44093841 44094099 -183430479 - LTR16C LTR ERVL -137 354 90 199 281 24 37 chr3 44094236 44094318 -183430260 - MIR SINE MIR -103 159 79 1730 187 0 20 chr3 44094353 44094652 -183429926 + AluJb SINE Alu 1 293 -19 844 226 67 46 chr3 44095582 44095910 -183428668 - LTR43 LTR ERV1 -137 465 131 303 148 0 0 chr3 44096038 44096092 -183428486 - LTR60 LTR ERV1 -532 54 1 468 246 51 17 chr3 44096312 44096487 -183428091 + L1MC5 LINE L1 7733 7913 -48 22 0 0 0 chr3 44096799 44096821 -183427757 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 44097111 44097132 -183427446 + AT_rich Low_complexity Low_complexity 1 21 0 381 246 40 24 chr3 44097484 44097610 -183426968 + MLT1H LTR MaLR 1 128 -421 213 39 0 0 chr3 44098783 44098809 -183425769 + (GA)n Simple_repeat Simple_repeat 1 26 0 2101 132 0 3 chr3 44100902 44101205 -183423373 + AluSp SINE Alu 1 302 -11 366 188 0 0 chr3 44101766 44101846 -183422732 + L1ME2 LINE L1 6085 6164 0 287 318 101 8 chr3 44102177 44102306 -183422272 + MIR3 SINE MIR 64 204 -4 243 0 0 0 chr3 44102761 44102788 -183421790 + (A)n Simple_repeat Simple_repeat 1 27 0 183 139 0 0 chr3 44102802 44102838 -183421740 + (TA)n Simple_repeat Simple_repeat 1 36 0 554 40 0 14 chr3 44103772 44103846 -183420732 + (TC)n Simple_repeat Simple_repeat 2 74 0 365 296 122 21 chr3 44103933 44104220 -183420358 - L1 LINE L1 -2804 3342 3027 975 137 17 11 chr3 44104341 44104516 -183420062 - L1PB4 LINE L1 -102 6054 5879 609 170 195 0 chr3 44104550 44104709 -183419869 - L1PB4 LINE L1 -777 5369 5180 6272 176 18 38 chr3 44104709 44106338 -183418240 - L1MA2 LINE L1 -367 5789 4352 2350 97 3 0 chr3 44106338 44106636 -183417942 + AluSp SINE Alu 4 302 -11 6272 176 18 38 chr3 44106636 44107191 -183417387 - L1MA2 LINE L1 -1804 4352 3787 4317 149 32 46 chr3 44107194 44108121 -183416457 - L1MC3 LINE L1 -146 7639 6726 1983 173 26 42 chr3 44108121 44108598 -183415980 + MLT2B2 LTR ERVL 1 453 0 2998 174 25 53 chr3 44108599 44109279 -183415299 - L1MC3 LINE L1 -1056 6729 6069 2254 103 0 3 chr3 44109279 44109600 -183414978 + THE1B LTR MaLR 45 364 0 288 227 13 27 chr3 44109600 44109675 -183414903 - L1MC2 LINE L1 -271 6073 6000 1500 199 75 35 chr3 44109690 44109900 -183414678 - L1M4 LINE L1 -1308 4838 4638 2084 125 17 0 chr3 44109900 44110188 -183414390 - AluSx SINE Alu -19 293 1 1500 199 75 35 chr3 44110188 44110460 -183414118 - L1M4 LINE L1 -1508 4638 4337 478 294 110 44 chr3 44110942 44111350 -183413228 - LTR16A1 LTR ERVL -13 444 10 1822 168 0 32 chr3 44111564 44111873 -183412705 - AluJo SINE Alu -10 302 4 2160 113 140 11 chr3 44112561 44112940 -183411638 - MSTA LTR MaLR 0 428 1 486 143 0 0 chr3 44113348 44113425 -183411153 + MER81 DNA DNA 30 106 -8 1640 204 131 18 chr3 44115003 44115569 -183409009 - MLT1E2 LTR MaLR -2 624 8 592 204 113 30 chr3 44117156 44117386 -183407192 + Charlie2 DNA MER1_type 2611 2859 -3 12125 152 45 46 chr3 44118011 44120683 -183403895 - L1PB1 LINE L1 -2 6865 4191 1302 112 28 0 chr3 44120683 44120861 -183403717 - AluSq SINE Alu -22 291 109 12125 152 45 46 chr3 44120861 44124264 -183400314 - L1PB1 LINE L1 -2676 4191 636 882 195 26 0 chr3 44124266 44124461 -183400117 - L1PB1 LINE L1 -6663 200 1 234 306 61 0 chr3 44125788 44125886 -183398692 + MIR SINE MIR 118 221 -41 1981 157 3 0 chr3 44126453 44126747 -183397831 - AluJo SINE Alu -17 295 1 216 0 0 0 chr3 44129755 44129779 -183394799 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 328 304 83 50 chr3 44130064 44130231 -183394347 + MIR SINE MIR 41 216 -46 382 310 49 0 chr3 44130341 44130483 -183394095 - L1M4 LINE L1 -1487 4659 4511 427 306 144 14 chr3 44130547 44130769 -183393809 - L1MDa LINE L1 -3959 2581 2331 738 194 62 48 chr3 44131371 44131644 -183392934 + L1ME3 LINE L1 4152 4428 -1718 2493 234 48 24 chr3 44131888 44132695 -183391883 + L1MB7 LINE L1 4142 4968 -1178 687 134 0 0 chr3 44132714 44132811 -183391767 + AluJ/FLAM SINE Alu 1 97 -215 2626 196 33 40 chr3 44132812 44133504 -183391074 + L1MA9 LINE L1 5588 6274 -38 292 200 13 0 chr3 44133527 44133602 -183390976 + L1MB7 LINE L1 4989 5064 -1082 1398 261 60 57 chr3 44133626 44134157 -183390421 + L1ME3 LINE L1 5421 5956 -206 2334 167 34 0 chr3 44134157 44134571 -183390007 + MSTB1 LTR MaLR 1 428 -4 1398 261 60 57 chr3 44134571 44134778 -183389800 + L1ME3 LINE L1 5956 6161 -1 289 298 58 16 chr3 44135070 44135191 -183389387 + MIR SINE MIR 32 157 -105 869 96 0 15 chr3 44135267 44135402 -183389176 + FLAM_C SINE Alu 1 133 0 3949 195 23 18 chr3 44136011 44137137 -183387441 + L1MB7 LINE L1 5036 6167 -17 183 42 0 0 chr3 44137288 44137312 -183387266 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 328 289 107 7 chr3 44137403 44137552 -183387026 + MIR SINE MIR 42 205 -57 199 271 100 71 chr3 44137589 44137759 -183386819 + MER5A DNA MER1_type 14 188 -1 2293 109 3 0 chr3 44138659 44138963 -183385615 + AluSp SINE Alu 3 307 -6 1844 51 0 0 chr3 44140577 44140794 -183383784 - AluY SINE Alu 0 311 95 226 322 98 44 chr3 44141194 44141377 -183383201 - L2 LINE L2 -5 3267 3075 418 292 31 12 chr3 44141506 44141667 -183382911 + MIR SINE MIR 96 259 -3 195 343 10 20 chr3 44141951 44142050 -183382528 + MIR SINE MIR 49 146 -116 2210 87 169 203 chr3 44142288 44143103 -183381475 - pTR5 LTR ERV1 0 2438 1651 561 64 0 0 chr3 44143475 44143553 -183381025 + (TC)n Simple_repeat Simple_repeat 1 78 0 292 198 54 81 chr3 44143898 44144009 -183380569 - MLT1I LTR MaLR -270 139 32 2187 72 0 7 chr3 44144225 44144518 -183380060 + AluY SINE Alu 1 291 -20 2038 159 0 0 chr3 44145203 44145505 -183379073 + AluJb SINE Alu 3 304 -8 2324 103 7 0 chr3 44147400 44147702 -183376876 - AluSg SINE Alu -6 304 1 2163 144 69 62 chr3 44148094 44148517 -183376061 - MSTB LTR MaLR 0 426 1 608 148 13 110 chr3 44148562 44148607 -183375971 - MER96B DNA MER1_type? -5 412 364 1828 168 3 3 chr3 44148607 44148898 -183375680 - AluJb SINE Alu -21 291 1 608 148 13 110 chr3 44148898 44149007 -183375571 - MER96B DNA MER1_type? -53 364 273 242 242 114 60 chr3 44150418 44150567 -183374011 - MER104 DNA Tc2 -2 178 22 208 276 57 21 chr3 44150733 44150840 -183373738 + MIR SINE MIR 3 116 -92 705 259 179 32 chr3 44150856 44151398 -183373180 - L2 LINE L2 -1 3312 2688 684 264 43 5 chr3 44151621 44151829 -183372749 + LTR16C LTR ERVL 265 480 -11 897 300 44 12 chr3 44152267 44152587 -183371991 - LTR16A LTR ERVL -1 449 120 270 200 0 0 chr3 44153185 44153249 -183371329 + MIR SINE MIR 94 140 -68 251 314 172 55 chr3 44153732 44154057 -183370521 - L2 LINE L2 -834 2480 2118 2816 220 38 34 chr3 44154072 44154835 -183369743 - L1ME1 LINE L1 -5 6161 5396 375 310 101 0 chr3 44154894 44155052 -183369526 - L2 LINE L2 -1258 2056 1883 400 202 0 11 chr3 44155122 44155211 -183369367 + LTR50 LTR ERVL 407 494 -301 1493 263 57 7 chr3 44155252 44155674 -183368904 - LTR16A LTR ERVL -7 443 1 294 246 107 33 chr3 44155685 44155807 -183368771 + LTR50 LTR ERVL 552 682 -113 564 182 167 78 chr3 44157293 44157485 -183367093 + MER3 DNA MER1_type 1 209 0 669 267 11 6 chr3 44157525 44157705 -183366873 - Zaphod DNA AcHobo 0 4031 3851 330 190 0 0 chr3 44157716 44157774 -183366804 - Zaphod DNA AcHobo -1170 2861 2804 242 205 0 0 chr3 44158146 44158185 -183366393 - MER115 DNA AcHobo -159 534 496 871 223 271 0 chr3 44158206 44158498 -183366080 - MER115 DNA AcHobo -322 371 1 1621 133 80 4 chr3 44158775 44159038 -183365540 - AluJo SINE Alu -29 283 1 572 205 17 8 chr3 44160006 44160123 -183364455 + MER5C DNA MER1_type 7 124 -200 204 283 17 0 chr3 44160450 44160510 -183364068 + (CA)n Simple_repeat Simple_repeat 1 61 0 351 278 91 10 chr3 44160685 44160883 -183363695 - L1ME LINE L1 -346 5775 5562 2615 148 21 5 chr3 44161634 44162053 -183362525 + MSTB LTR MaLR 1 426 0 2236 113 0 7 chr3 44162143 44162445 -183362133 - AluSq SINE Alu -13 300 1 264 59 0 0 chr3 44162919 44162953 -183361625 + (CA)n Simple_repeat Simple_repeat 2 35 0 978 170 50 25 chr3 44163506 44163706 -183360872 - MER3 DNA MER1_type -4 205 1 1738 104 6 76 chr3 44163835 44164152 -183360426 + L1MA2 LINE L1 5997 6291 -13 1272 144 5 15 chr3 44164152 44164354 -183360224 + THE1B LTR MaLR 1 200 -164 259 153 0 153 chr3 44164491 44164563 -183360015 + THE1B LTR MaLR 295 355 0 12016 89 8 0 chr3 44164563 44166131 -183358447 + THE1B-int LTR MaLR 1 1580 0 2404 110 28 28 chr3 44166131 44166495 -183358083 + THE1B LTR MaLR 1 364 0 275 305 17 68 chr3 44166588 44166706 -183357872 + MIR SINE MIR 30 141 -67 2430 61 7 0 chr3 44166720 44167013 -183357565 + AluY SINE Alu 1 295 -16 1952 158 0 0 chr3 44167022 44167313 -183357265 + AluJb SINE Alu 1 291 -21 1968 118 17 21 chr3 44168692 44168980 -183355598 + AluSq SINE Alu 1 287 -26 241 371 54 19 chr3 44169657 44169916 -183354662 - L3 LINE CR1 -29 1548 1281 2182 151 124 81 chr3 44169977 44170508 -183354070 + MLT2B3 LTR ERVL 1 554 0 260 195 122 0 chr3 44170594 44170676 -183353902 + MER5A DNA MER1_type 18 109 -80 246 306 61 0 chr3 44170720 44170818 -183353760 - L3 LINE CR1 -443 1134 1031 1569 177 40 7 chr3 44171584 44171861 -183352717 + AluJb SINE Alu 1 286 -26 353 123 15 0 chr3 44171868 44171933 -183352645 + (CA)n Simple_repeat Simple_repeat 2 67 0 601 259 90 0 chr3 44172077 44172266 -183352312 - L2 LINE L2 -5 3308 3103 541 222 194 33 chr3 44172268 44172448 -183352130 - MER3 DNA MER1_type 0 209 1 569 266 97 28 chr3 44172471 44172793 -183351785 - L2 LINE L2 -244 3069 2721 285 238 93 60 chr3 44172877 44173028 -183351550 + L2 LINE L2 2262 2417 -897 494 284 65 9 chr3 44173029 44173141 -183351437 + L2 LINE L2 1659 1763 -1551 279 0 0 0 chr3 44173141 44173172 -183351406 + (CA)n Simple_repeat Simple_repeat 1 31 0 494 284 65 9 chr3 44173172 44173274 -183351304 + L2 LINE L2 1763 1885 -1429 410 274 142 0 chr3 44173304 44173508 -183351070 + L2 LINE L2 2429 2661 -653 299 148 0 16 chr3 44176209 44176270 -183348308 + (TA)n Simple_repeat Simple_repeat 2 61 0 285 75 0 0 chr3 44176387 44176427 -183348151 + (TC)n Simple_repeat Simple_repeat 1 40 0 390 296 97 5 chr3 44177521 44177707 -183346871 - L2 LINE L2 -3 3310 3108 1122 248 21 7 chr3 44177723 44178013 -183346565 - MER90 LTR ERV1 0 614 321 7345 43 3 0 chr3 44178163 44179377 -183345201 + L1PA5 LINE L1 4906 6123 -31 836 203 49 167 chr3 44179577 44180189 -183344389 - MER34B LTR ERV1 -2 540 1 529 196 188 0 chr3 44180200 44180338 -183344240 + MER5A DNA MER1_type 26 189 0 1651 168 19 32 chr3 44182473 44182789 -183341789 - AluJo SINE Alu 0 312 1 1097 278 101 9 chr3 44184936 44185382 -183339196 + LTR16C LTR ERVL 3 489 -2 300 232 117 59 chr3 44185397 44185542 -183339036 + MLT1I LTR MaLR 96 267 -179 201 237 171 40 chr3 44185771 44185923 -183338655 - L2 LINE L2 -147 3166 2995 1082 245 93 58 chr3 44186115 44186547 -183338031 - LTR16A1 LTR ERVL -10 447 1 207 0 0 0 chr3 44187464 44187487 -183337091 + (T)n Simple_repeat Simple_repeat 1 23 0 291 212 30 0 chr3 44187773 44187839 -183336739 + MIR SINE MIR 59 126 -82 2065 151 0 3 chr3 44188169 44188480 -183336098 + AluSx SINE Alu 1 310 -2 308 258 0 0 chr3 44188549 44188638 -183335940 - L1M4 LINE L1 -2728 3418 3330 458 234 144 30 chr3 44188957 44189124 -183335454 + MER5A DNA MER1_type 4 189 0 311 234 31 32 chr3 44191339 44191462 -183333116 - MIR SINE MIR -65 143 16 1216 147 0 68 chr3 44192532 44192587 -183331991 - MER46A DNA MER2_type -2495 236 179 275 26 51 0 chr3 44192587 44192626 -183331952 + (TTTTA)n Simple_repeat Simple_repeat 3 43 0 1216 147 0 68 chr3 44192626 44192821 -183331757 - MER46A DNA MER2_type -2552 179 3 325 194 0 14 chr3 44192827 44192899 -183331679 - MER116 DNA Mariner -2 78 8 364 309 58 7 chr3 44194005 44194144 -183330434 - MIR SINE MIR -88 174 29 2004 133 8 64 chr3 44196769 44197145 -183327433 + THE1A LTR MaLR 1 355 0 301 303 50 0 chr3 44197431 44197530 -183327048 + MIR SINE MIR 2 105 -157 1235 14 50 0 chr3 44197780 44198202 -183326376 + (TAGA)n Simple_repeat Simple_repeat 1 443 0 460 303 58 40 chr3 44198272 44198651 -183325927 - L1MEc LINE L1 -4658 1738 1353 200 204 0 0 chr3 44199742 44199786 -183324792 + GA-rich Low_complexity Low_complexity 3 46 0 22 0 0 0 chr3 44199955 44199977 -183324601 + AT_rich Low_complexity Low_complexity 1 22 0 728 304 110 33 chr3 44200088 44200605 -183323973 + HAL1b LINE L1 95 651 -697 350 267 0 74 chr3 44201272 44201407 -183323171 - MIR SINE MIR -60 202 78 569 362 7 20 chr3 44202835 44203128 -183321450 + L2 LINE L2 2443 2731 -583 2281 246 102 15 chr3 44203132 44203875 -183320703 + L1ME3A LINE L1 5357 6164 -6 451 291 70 35 chr3 44203875 44204102 -183320476 + L2 LINE L2 2732 2966 -348 205 324 84 28 chr3 44204922 44205064 -183319514 + MIR SINE MIR 31 180 -82 392 320 23 8 chr3 44205612 44205740 -183318838 + L1MC/D LINE L1 5507 5636 -2172 2159 152 21 5 chr3 44205776 44206164 -183318414 - L1MB2 LINE L1 -3 6168 5775 261 257 40 0 chr3 44207188 44207262 -183317316 - MIR SINE MIR -77 185 109 194 0 39 0 chr3 44208171 44208197 -183316381 + (TG)n Simple_repeat Simple_repeat 2 28 0 2137 155 32 5 chr3 44208652 44209032 -183315546 - MLT1B LTR MaLR 0 390 1 260 295 78 39 chr3 44209448 44209577 -183315001 + L2 LINE L2 3139 3272 0 189 111 0 0 chr3 44209662 44209689 -183314889 - MIR SINE MIR -10 252 226 194 284 65 52 chr3 44210082 44210237 -183314341 + L2 LINE L2 2900 3056 -257 764 253 56 0 chr3 44210319 44210517 -183314061 - MER3 DNA MER1_type 0 209 1 343 264 103 0 chr3 44211439 44211526 -183313052 - MIR SINE MIR -73 189 94 1518 240 99 81 chr3 44211979 44212563 -183312015 + MLT1G1 LTR MaLR 1 595 0 1186 187 35 92 chr3 44212720 44213200 -183311378 + MER74A LTR ERVL 2 526 -32 24 0 0 0 chr3 44213280 44213304 -183311274 + AT_rich Low_complexity Low_complexity 1 24 0 342 286 56 68 chr3 44213716 44213877 -183310701 + MER115 DNA AcHobo 276 434 -259 254 184 0 0 chr3 44213895 44213933 -183310645 + Zaphod DNA AcHobo 3994 4031 0 1245 248 165 13 chr3 44214439 44214894 -183309684 - MLT1H1 LTR MaLR 0 555 32 1065 167 0 0 chr3 44214949 44215117 -183309461 - AluJ SINE Alu -16 296 129 264 100 67 33 chr3 44215142 44215156 -183309422 - AluJ SINE Alu -168 134 122 207 0 0 0 chr3 44215156 44215179 -183309399 + (TTG)n Simple_repeat Simple_repeat 2 24 0 264 100 67 33 chr3 44215179 44215224 -183309354 - AluJ SINE Alu -180 122 73 370 330 43 0 chr3 44216787 44216902 -183307676 + MIR3 SINE MIR 13 132 -76 471 78 0 0 chr3 44217053 44217117 -183307461 + (TG)n Simple_repeat Simple_repeat 2 65 0 2408 197 63 20 chr3 44217433 44217972 -183306606 + MER68 LTR ERV1 1 562 0 272 331 2 2 chr3 44218573 44218656 -183305922 - MIR SINE MIR -105 103 20 740 97 18 0 chr3 44220503 44220617 -183303961 + (GGAA)n Simple_repeat Simple_repeat 2 117 0 1091 203 50 99 chr3 44221140 44221524 -183303054 + MLT1A1 LTR MaLR 1 365 0 381 271 16 41 chr3 44222258 44222380 -183302198 + MLT1I LTR MaLR 291 409 0 204 289 55 120 chr3 44222389 44222805 -183301773 + L2 LINE L2 2832 3220 -52 332 26 0 0 chr3 44223110 44223148 -183301430 - L1P2 LINE L1 -346 5809 5772 2462 28 7 0 chr3 44223148 44223433 -183301145 + L1PA4 LINE L1 5867 6155 0 416 294 169 0 chr3 44223436 44223572 -183301006 + MER5A DNA MER1_type 31 189 0 384 259 200 7 chr3 44223651 44223786 -183300792 - MIR SINE MIR -49 213 53 297 258 37 65 chr3 44224073 44224266 -183300312 - MIR3 SINE MIR -74 134 3 503 265 102 6 chr3 44224870 44225036 -183299542 + MER91A DNA MER1_type 5 186 -10 1022 290 54 33 chr3 44225114 44225538 -183299040 - LTR16C LTR ERVL 0 491 59 567 261 96 10 chr3 44226399 44226598 -183297980 + MIR SINE MIR 15 230 -32 315 122 0 0 chr3 44226787 44226836 -183297742 + (CA)n Simple_repeat Simple_repeat 2 50 0 219 159 23 0 chr3 44226976 44227020 -183297558 + (CCGGG)n Simple_repeat Simple_repeat 1 45 0 219 182 36 0 chr3 44227008 44227071 -183297507 + (CGG)n Simple_repeat Simple_repeat 1 65 0 445 279 122 37 chr3 44227249 44227531 -183297047 + L2 LINE L2 2725 3024 -248 921 267 78 32 chr3 44227983 44228191 -183296387 + LTR16A LTR ERVL 90 322 -128 1277 166 194 0 chr3 44228191 44228444 -183296134 - AluJb SINE Alu 0 302 1 921 267 78 32 chr3 44228444 44228580 -183295998 + LTR16A LTR ERVL 322 450 0 438 264 70 92 chr3 44228604 44228831 -183295747 + MIR SINE MIR 23 244 -18 504 146 0 31 chr3 44229141 44229237 -183295341 + L1MA8 LINE L1 6199 6291 0 1030 223 49 4 chr3 44229237 44229502 -183295076 + L1ME3A LINE L1 5865 6141 -29 763 210 38 21 chr3 44229811 44229997 -183294581 - MER5A DNA MER1_type 0 189 1 251 312 259 28 chr3 44230161 44230766 -183293812 + L2 LINE L2 1755 2499 -815 215 258 32 148 chr3 44230769 44230859 -183293719 + L2 LINE L2 2918 2984 -288 732 208 0 0 chr3 44230859 44230984 -183293594 - FLAM_A SINE Alu -8 125 1 215 258 32 148 chr3 44230984 44231048 -183293530 + L2 LINE L2 2984 3054 -218 2012 162 109 13 chr3 44231168 44231563 -183293015 + MER83 LTR ERV1 16 448 0 451 248 0 0 chr3 44231607 44231712 -183292866 - L2 LINE L2 -5 3308 3204 227 125 0 0 chr3 44231713 44231745 -183292833 - MER70A LTR ERVL 0 472 441 * 2641 182 46 4 chr3 44231743 44232200 -183292378 - MER70B LTR ERVL -102 476 1 207 279 131 0 chr3 44232222 44232283 -183292295 + L2 LINE L2 3241 3309 -4 986 202 41 58 chr3 44233146 44233389 -183291189 - MIR SINE MIR -7 255 17 319 195 49 37 chr3 44233429 44233511 -183291067 + MER117 DNA MER1_type 65 147 -50 598 164 0 41 chr3 44233550 44233672 -183290906 + MER31B LTR ERV1 1 117 -349 * 645 231 63 111 chr3 44233668 44233815 -183290763 - MLT1I LTR MaLR -6 403 250 2185 117 0 0 chr3 44233815 44234114 -183290464 - AluSx SINE Alu -13 299 1 645 231 63 111 chr3 44234114 44234299 -183290279 - MLT1I LTR MaLR -159 250 87 1441 224 111 8 chr3 44234444 44234806 -183289772 + LTR16A LTR ERVL 52 450 0 1114 162 69 0 chr3 44234908 44235112 -183289466 - MER20 DNA MER1_type -1 218 1 30 27 0 0 chr3 44235402 44235439 -183289139 + AT_rich Low_complexity Low_complexity 1 37 0 1144 221 32 16 chr3 44236068 44236376 -183288202 - Charlie2 DNA MER1_type -7 2855 2543 189 107 0 0 chr3 44236477 44236505 -183288073 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 288 320 21 10 chr3 44237122 44237219 -183287359 + L2 LINE L2 3214 3311 -2 1856 129 0 11 chr3 44238065 44238345 -183286233 + AluSx SINE Alu 23 299 -13 2743 13 0 0 chr3 44243048 44243356 -183281222 + AluYa5 SINE Alu 1 308 -3 361 294 83 61 chr3 44243365 44243593 -183280985 + L1ME LINE L1 4907 5139 -1007 960 226 15 0 chr3 44243690 44243889 -183280689 + MER3 DNA MER1_type 1 202 -7 427 315 74 39 chr3 44243902 44244295 -183280283 + L1ME LINE L1 5268 5686 -476 949 136 28 51 chr3 44245242 44245419 -183279159 - MER90 LTR ERV1 -402 173 1 648 259 35 0 chr3 44245419 44245583 -183278995 - MLT1L LTR MaLR -83 532 363 374 232 314 11 chr3 44245689 44245874 -183278704 - L2 LINE L2 -70 3243 3003 535 263 30 89 chr3 44246232 44246502 -183278076 + MLT1J LTR MaLR 3 256 -255 232 186 0 0 chr3 44246636 44246679 -183277899 + T-rich Low_complexity Low_complexity 1 43 0 1174 124 0 0 chr3 44248921 44249082 -183275496 - AluSp SINE Alu -19 294 134 321 244 35 0 chr3 44249277 44249363 -183275215 + MLT1J LTR MaLR 443 531 -18 329 258 66 101 chr3 44249400 44249598 -183274980 + MLT1J LTR MaLR 271 461 -50 615 317 181 30 chr3 44250547 44251565 -183273013 + L2 LINE L2 1726 2897 -417 25 31 0 0 chr3 44252635 44252667 -183271911 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr3 44253113 44253135 -183271443 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 268 304 235 10 chr3 44255790 44255994 -183268584 - MIR SINE MIR -12 250 1 1729 260 73 4 chr3 44256016 44256466 -183268112 - MLT1H LTR MaLR -8 541 61 1446 204 21 11 chr3 44256466 44256751 -183267827 + L1MD3 LINE L1 7540 7827 -168 1141 276 37 81 chr3 44256811 44257446 -183267132 - L1M4 LINE L1 -2083 4063 3465 1721 135 0 11 chr3 44257446 44257736 -183266842 + AluSx SINE Alu 33 312 0 1141 276 37 81 chr3 44257736 44257856 -183266722 - L1M4 LINE L1 -2681 3465 3341 3745 116 11 0 chr3 44258305 44258829 -183265749 - L1PB3 LINE L1 -4 6150 5621 500 285 156 73 chr3 44258839 44259288 -183265290 - MLT1H LTR MaLR -50 499 14 28 0 0 0 chr3 44259407 44259435 -183265143 + AT_rich Low_complexity Low_complexity 1 28 0 1127 267 66 24 chr3 44259655 44260123 -183264455 - L1MC/D LINE L1 -2037 5771 5284 1779 188 64 6 chr3 44260135 44260480 -183264098 + MLT1A1 LTR MaLR 1 365 0 2177 112 0 19 chr3 44260483 44260797 -183263781 - AluSq SINE Alu -5 308 1 516 136 0 0 chr3 44261305 44261393 -183263185 + (TG)n Simple_repeat Simple_repeat 2 89 0 2128 32 4 16 chr3 44262097 44262348 -183262230 + L1PA4 LINE L1 5908 6155 0 294 348 36 0 chr3 44262371 44262483 -183262095 - MER102b DNA MER1_type -2 339 224 1012 277 87 30 chr3 44262538 44262931 -183261647 + MLT1J LTR MaLR 97 511 0 644 320 69 0 chr3 44263178 44263425 -183261153 - MER102b DNA MER1_type -51 290 27 370 329 18 45 chr3 44263618 44263840 -183260738 - L2 LINE L2 0 3313 3098 839 227 67 0 chr3 44263853 44264047 -183260531 + L1MEc LINE L1 36 242 -6154 390 275 62 44 chr3 44265702 44265862 -183258716 + L2 LINE L2 3109 3271 -42 2117 87 14 0 chr3 44266917 44267274 -183257304 + AluSx SINE Alu 3 363 0 1812 184 18 18 chr3 44267308 44267640 -183256938 - MLT1A1 LTR MaLR -15 350 19 237 295 63 32 chr3 44267969 44268064 -183256514 + L2 LINE L2 3216 3313 0 738 207 37 11 chr3 44268271 44268459 -183256119 - L1MC4 LINE L1 -139 7903 7711 2262 209 39 39 chr3 44268929 44269494 -183255084 + MER74B LTR ERVL 58 622 0 429 213 64 11 chr3 44269494 44269588 -183254990 + Charlie2 DNA MER1_type 195 293 -2489 9951 41 2 0 chr3 44269588 44270783 -183253795 + L1P LINE L1 3668 4865 -1281 829 157 0 30 chr3 44320937 44321071 -183203507 + FLAM_C SINE Alu 11 140 -3 933 86 0 29 chr3 44323100 44323240 -183201338 + AluSg/x SINE Alu 173 308 -4 180 333 51 0 chr3 44323610 44323688 -183200890 - MIR SINE MIR -77 185 104 1686 222 47 40 chr3 44323976 44324474 -183200104 + L1MB7 LINE L1 5664 6168 -16 2251 119 3 0 chr3 44324519 44324830 -183199748 + AluSx SINE Alu 1 312 0 407 244 109 0 chr3 44325014 44325133 -183199445 + MIR SINE MIR 99 230 -32 234 128 0 0 chr3 44326734 44326773 -183197805 + (TCC)n Simple_repeat Simple_repeat 1 39 0 1149 166 37 0 chr3 44328632 44328819 -183195759 + MER20 DNA MER1_type 1 194 -25 1992 62 12 0 chr3 44329712 44329955 -183194623 - L1PA7 LINE L1 0 6154 5909 514 250 83 13 chr3 44330580 44330736 -183193842 - MIR SINE MIR -28 234 68 2545 67 0 0 chr3 44332145 44332445 -183192133 - AluY SINE Alu -11 300 1 1025 115 28 16 chr3 44332486 44332668 -183191910 + MER53 DNA DNA 6 189 0 22 94 0 0 chr3 44332785 44332849 -183191729 + AT_rich Low_complexity Low_complexity 1 64 0 494 278 147 54 chr3 44333018 44333407 -183191171 + MLT1K LTR MaLR 150 574 -14 322 258 21 11 chr3 44334096 44334192 -183190386 - MIR SINE MIR -74 134 45 22 0 0 0 chr3 44334296 44334318 -183190260 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 44334656 44334683 -183189895 + AT_rich Low_complexity Low_complexity 1 27 0 1750 226 68 86 chr3 44334974 44335456 -183189122 + MLT1H LTR MaLR 12 484 -65 2351 110 0 0 chr3 44335456 44335765 -183188813 - AluSg SINE Alu 0 310 2 1750 226 68 86 chr3 44335765 44335830 -183188748 + MLT1H LTR MaLR 484 549 0 922 132 0 0 chr3 44336030 44336159 -183188419 + AluJ SINE Alu 1 129 -183 207 167 0 0 chr3 44336159 44336201 -183188377 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 1283 127 0 11 chr3 44336201 44336558 -183188020 + AluJ SINE Alu 117 471 0 630 295 88 43 chr3 44336821 44337131 -183187447 - LTR16A1 LTR ERVL -3 479 153 3682 153 40 2 chr3 44338240 44338822 -183185756 + MER6A DNA MER2_type 2 605 0 23 54 0 0 chr3 44339023 44339060 -183185518 + AT_rich Low_complexity Low_complexity 1 37 0 364 255 283 0 chr3 44339556 44339701 -183184877 + MER5A DNA MER1_type 4 189 0 648 235 86 27 chr3 44340161 44340348 -183184230 - MER3 DNA MER1_type 0 209 12 2011 139 3 0 chr3 44340567 44340861 -183183717 + AluSq SINE Alu 2 296 -17 180 0 0 0 chr3 44340861 44340881 -183183697 + (GA)n Simple_repeat Simple_repeat 2 21 0 225 0 0 0 chr3 44341403 44341428 -183183150 + (A)n Simple_repeat Simple_repeat 1 25 0 26 0 0 0 chr3 44341518 44341544 -183183034 + AT_rich Low_complexity Low_complexity 1 26 0 2093 104 3 7 chr3 44341547 44341836 -183182742 + AluSq SINE Alu 1 288 -25 27 0 0 0 chr3 44342185 44342212 -183182366 + AT_rich Low_complexity Low_complexity 1 27 0 555 313 76 61 chr3 44342461 44342559 -183182019 + HAL1 LINE L1 800 895 -1612 2151 135 0 3 chr3 44342559 44342856 -183181722 + AluSx SINE Alu 1 296 -16 555 313 76 61 chr3 44342856 44343246 -183181332 + HAL1 LINE L1 895 1295 -1212 279 244 63 19 chr3 44343365 44343468 -183181110 + HAL1b LINE L1 388 1578 -866 382 172 216 0 chr3 44343470 44343586 -183180992 - MER104 DNA Tc2 -2 178 38 330 289 74 0 chr3 44343635 44343770 -183180808 + HAL1 LINE L1 1589 1733 -774 239 254 0 0 chr3 44344143 44344198 -183180380 + HAL1 LINE L1 2275 2329 -178 195 129 0 0 chr3 44344452 44344483 -183180095 + (TA)n Simple_repeat Simple_repeat 2 32 0 506 166 280 78 chr3 44345314 44345501 -183179077 + Charlie2 DNA MER1_type 26 251 -2531 2662 209 70 9 chr3 44345501 44346061 -183178517 + MLT1E3 LTR MaLR 1 594 -30 267 242 75 92 chr3 44346070 44346190 -183178388 + Charlie2 DNA MER1_type 250 367 -2415 554 187 75 0 chr3 44346209 44346343 -183178235 + Charlie2 DNA MER1_type 2264 2407 -455 593 192 233 12 chr3 44346358 44346530 -183178048 + Charlie2 DNA MER1_type 2651 2860 -2 239 241 72 12 chr3 44346548 44346631 -183177947 + MLT1K LTR MaLR 16 103 -485 690 237 77 69 chr3 44346793 44347082 -183177496 + MLT1K LTR MaLR 127 441 -147 403 235 139 0 chr3 44347169 44347284 -183177294 + MLT1K LTR MaLR 424 554 -34 38 0 0 0 chr3 44347805 44347843 -183176735 + AT_rich Low_complexity Low_complexity 1 38 0 23 86 0 0 chr3 44348039 44348097 -183176481 + AT_rich Low_complexity Low_complexity 1 58 0 1947 111 46 86 chr3 44348527 44348878 -183175700 + MER1B DNA MER1_type 1 337 0 1495 173 0 15 chr3 44349030 44349290 -183175288 + L1PA15 LINE L1 5910 6165 0 897 202 2 0 chr3 44350041 44350667 -183173911 + (TA)n Simple_repeat Simple_repeat 1 627 0 198 0 0 0 chr3 44351238 44351260 -183173318 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1482 34 0 0 chr3 44351260 44351435 -183173143 - L1PA4 LINE L1 -18 6137 5963 261 232 0 0 chr3 44351602 44351671 -183172907 - L1MB7 LINE L1 -2 6182 6114 2169 103 10 0 chr3 44351674 44351966 -183172612 + AluSx SINE Alu 3 297 -15 1060 169 0 0 chr3 44351966 44352132 -183172446 + AluSg/x SINE Alu 134 299 -13 3601 153 45 6 chr3 44352134 44352796 -183171782 - L1MB7 LINE L1 -57 6127 5440 1333 285 56 19 chr3 44352912 44353605 -183170973 + L1MC4a LINE L1 4885 5610 -783 5927 195 98 78 chr3 44353609 44353661 -183170917 + L1MC4a LINE L1 5834 5883 -461 1693 183 6 28 chr3 44353661 44353978 -183170600 + AluJb SINE Alu 1 310 -2 5927 195 98 78 chr3 44353978 44355153 -183169425 + L1MC4a LINE L1 5883 7033 689 2306 97 0 7 chr3 44355153 44355453 -183169125 + AluSc SINE Alu 1 298 -11 5927 195 98 78 chr3 44355453 44356049 -183168529 + L1MC4a LINE L1 7033 6220 -124 1789 158 7 17 chr3 44356049 44356341 -183168237 - AluJo SINE Alu -23 289 1 5927 195 98 78 chr3 44356341 44356470 -183168108 + L1MC4a LINE L1 6219 6344 0 1748 135 96 11 chr3 44356632 44356913 -183167665 - AluSx SINE Alu -7 305 1 333 188 135 10 chr3 44357025 44357121 -183167457 + MER33 DNA MER1_type 27 134 -190 1462 111 0 0 chr3 44357133 44357322 -183167256 + AluY SINE Alu 1 189 -122 1219 103 0 17 chr3 44357395 44357569 -183167009 - AluY SINE Alu -1 310 140 801 189 74 33 chr3 44357736 44358043 -183166535 - MER63 DNA MER1_type 0 1060 712 1153 101 24 6 chr3 44358059 44358228 -183166350 - MER30 DNA MER1_type -58 172 1 233 269 167 0 chr3 44358229 44358307 -183166271 - MER63 DNA MER1_type -119 717 1 3773 156 49 7 chr3 44358335 44359013 -183165565 + L1MB8 LINE L1 5472 6177 -1 1954 115 50 7 chr3 44359278 44359556 -183165022 + AluSx SINE Alu 1 290 -22 1078 254 81 39 chr3 44360705 44361139 -183163439 - LTR16A1 LTR ERVL -2 455 4 186 306 20 0 chr3 44361438 44361487 -183163091 + MIR3 SINE MIR 107 156 -52 2112 111 0 17 chr3 44361558 44361855 -183162723 + AluSx SINE Alu 1 292 -20 22 0 0 0 chr3 44362133 44362155 -183162423 + AT_rich Low_complexity Low_complexity 1 22 0 1872 117 15 7 chr3 44363055 44363356 -183161222 + AluSx SINE Alu 6 308 0 294 50 0 0 chr3 44363355 44363395 -183161183 + (TA)n Simple_repeat Simple_repeat 2 41 0 944 217 38 0 chr3 44363931 44364115 -183160463 - MER63A DNA MER1_type 0 210 20 180 289 0 0 chr3 44364137 44364189 -183160389 - MIR SINE MIR -76 132 81 619 116 0 0 chr3 44364387 44364473 -183160105 - AluSp/q SINE Alu -14 299 214 213 230 204 9 chr3 44365521 44365634 -183158944 - MIR SINE MIR -81 181 47 184 315 0 19 chr3 44366699 44366753 -183157825 - MIR SINE MIR -119 89 37 2165 111 3 0 chr3 44367215 44367512 -183157066 + AluSq SINE Alu 1 298 -15 2213 96 0 10 chr3 44367524 44367815 -183156763 + AluSx SINE Alu 3 290 -22 413 202 64 0 chr3 44368153 44368247 -183156331 + HsTC2 DNA Tc2 1 100 -1798 2150 118 16 3 chr3 44368675 44368979 -183155599 + AluSq SINE Alu 3 310 -3 2251 111 0 3 chr3 44369072 44369370 -183155208 + AluSc SINE Alu 1 297 -12 1669 199 0 14 chr3 44369875 44370162 -183154416 + AluJo SINE Alu 1 283 -29 1673 147 3 57 chr3 44370377 44370677 -183153901 - AluJo SINE Alu -28 284 1 1695 109 117 32 chr3 44371096 44371379 -183153199 + AluJo SINE Alu 1 307 -5 1048 233 45 102 chr3 44371629 44372200 -183152378 + MER34 LTR ERV1 1 539 -3 1262 98 132 10 chr3 44372519 44372724 -183151854 + MER30 DNA MER1_type 1 230 0 867 260 64 4 chr3 44374077 44374327 -183150251 - MER115 DNA AcHobo -425 268 4 1763 94 13 17 chr3 44374457 44374691 -183149887 - AluSg/x SINE Alu -12 300 68 223 305 73 0 chr3 44375027 44375109 -183149469 + MIR SINE MIR 3 90 -172 832 252 78 0 chr3 44375213 44375455 -183149123 - LTR16A1 LTR ERVL -31 426 166 1464 207 89 3 chr3 44375487 44375791 -183148787 - MLT1A2 LTR MaLR -4 370 41 2532 50 3 10 chr3 44375798 44376098 -183148480 - AluY SINE Alu -13 298 1 446 231 62 44 chr3 44376157 44376317 -183148261 - LTR16A1 LTR ERVL -294 163 1 2008 111 35 3 chr3 44376568 44376857 -183147721 - AluSc SINE Alu -11 298 1 545 73 0 0 chr3 44376875 44376943 -183147635 + AluSg1 SINE Alu 24 91 -218 1198 164 176 70 chr3 44377065 44377305 -183147273 + Charlie1b DNA MER1_type 73 286 -2475 2100 128 3 0 chr3 44377305 44377603 -183146975 - AluSq SINE Alu -13 300 2 1198 164 176 70 chr3 44377603 44377614 -183146964 + Charlie1b DNA MER1_type 286 294 -2467 2553 66 0 0 chr3 44377614 44377918 -183146660 - AluY SINE Alu -7 304 1 1198 164 176 70 chr3 44377918 44378068 -183146510 + Charlie1b DNA MER1_type 294 518 -5 343 268 106 22 chr3 44378935 44379114 -183145464 - MIR SINE MIR -64 198 5 267 278 0 37 chr3 44380502 44380610 -183143968 + L1ME LINE L1 5723 5826 -295 2165 110 0 0 chr3 44380612 44380894 -183143684 + AluSx SINE Alu 1 282 -30 225 0 0 0 chr3 44380897 44380922 -183143656 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 2052 119 3 26 chr3 44380934 44381236 -183143342 + AluSq SINE Alu 1 295 -18 410 287 42 59 chr3 44381969 44382059 -183142519 - MIR SINE MIR -1 261 171 2042 131 7 10 chr3 44382059 44382356 -183142222 + AluSx SINE Alu 1 296 -16 410 287 42 59 chr3 44382356 44382502 -183142076 - MIR SINE MIR -91 171 29 201 175 0 63 chr3 44383017 44383080 -183141498 + (TTTG)n Simple_repeat Simple_repeat 2 60 0 288 0 0 0 chr3 44383185 44383217 -183141361 + (TG)n Simple_repeat Simple_repeat 1 32 0 1906 118 7 35 chr3 44383217 44383504 -183141074 - AluSx SINE Alu -33 279 1 368 130 26 0 chr3 44383528 44383605 -183140973 + (CTTG)n Simple_repeat Simple_repeat 2 80 0 377 53 0 35 chr3 44383610 44383667 -183140911 + (TCTCC)n Simple_repeat Simple_repeat 2 56 0 2208 105 3 25 chr3 44384281 44384595 -183139983 - AluSx SINE Alu -5 307 1 505 184 64 37 chr3 44384615 44384752 -183139826 - L1ME1 LINE L1 0 6178 6032 2118 109 0 3 chr3 44384781 44385092 -183139486 - AluSq SINE Alu 0 310 1 2483 74 0 3 chr3 44385094 44385405 -183139173 - AluY SINE Alu -1 310 1 1288 77 77 10 chr3 44385416 44385623 -183138955 - L1MA5A LINE L1 -3 6294 6074 422 338 80 31 chr3 44385699 44386051 -183138527 - L2 LINE L2 -18 3295 2927 1011 192 20 15 chr3 44386189 44386392 -183138186 + MER3 DNA MER1_type 1 204 -5 2209 107 14 0 chr3 44386438 44386728 -183137850 + AluSg SINE Alu 1 294 -16 212 260 65 13 chr3 44386815 44386892 -183137686 - L2 LINE L2 -793 2521 2441 2208 127 0 13 chr3 44386954 44387270 -183137308 - AluSx SINE Alu 0 312 1 216 162 0 0 chr3 44387298 44387335 -183137243 + (CA)n Simple_repeat Simple_repeat 2 38 0 682 159 55 55 chr3 44387881 44388112 -183136466 + MER106B DNA MER1_type 1 1058 -1 2373 165 15 0 chr3 44388164 44388576 -183136002 + L1MB2 LINE L1 5751 6168 -3 1146 122 0 0 chr3 44388613 44388793 -183135785 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 268 61 82 0 chr3 44388794 44388843 -183135735 + GA-rich Low_complexity Low_complexity 4 56 0 2442 231 107 13 chr3 44389305 44390050 -183134528 - L1ME3 LINE L1 -2 6160 5346 267 329 158 7 chr3 44390546 44390698 -183133880 + MLT1L LTR MaLR 99 273 -342 3077 121 60 59 chr3 44391041 44391587 -183132991 + LTR10A LTR ERV1 1 547 -62 332 270 60 10 chr3 44391637 44391737 -183132841 - MLT1L LTR MaLR -162 453 349 271 164 180 0 chr3 44391948 44392009 -183132569 + MLT1L LTR MaLR 530 601 -14 1589 212 3 16 chr3 44392014 44392330 -183132248 + AluJo SINE Alu 1 312 0 348 135 95 14 chr3 44392404 44392478 -183132100 - MER3 DNA MER1_type -5 204 125 2210 116 0 3 chr3 44392478 44392780 -183131798 + AluSg SINE Alu 1 301 -9 1382 83 0 0 chr3 44392782 44392950 -183131628 + AluSg/x SINE Alu 135 302 -10 447 159 0 0 chr3 44392966 44393035 -183131543 - MER3 DNA MER1_type -81 128 60 2420 137 67 28 chr3 44393036 44393411 -183131167 + MER83 LTR ERV1 1 397 -51 2220 107 0 3 chr3 44393411 44393710 -183130868 - AluSx SINE Alu -14 298 1 2420 137 67 28 chr3 44393710 44393765 -183130813 + MER83 LTR ERV1 397 448 0 17956 144 39 32 chr3 44393765 44395743 -183128835 + MER83-int LTR ERV1 12 1974 -2311 2302 92 17 3 chr3 44395743 44396038 -183128540 - AluSc SINE Alu -10 299 1 17956 144 39 32 chr3 44396038 44397456 -183127122 + MER83-int LTR ERV1 1974 4274 -11 2185 114 166 5 chr3 44397457 44397843 -183126735 + MER83 LTR ERV1 1 448 0 300 297 84 57 chr3 44398909 44399172 -183125406 + L1M4 LINE L1 4434 4703 -1443 1725 139 109 0 chr3 44399301 44399568 -183125010 - AluSx SINE Alu -14 298 3 2086 222 49 56 chr3 44399789 44400038 -183124540 + MLT1E2 LTR MaLR 1 250 -376 343 0 0 0 chr3 44400038 44400076 -183124502 + (TTG)n Simple_repeat Simple_repeat 2 180 0 1590 111 147 20 chr3 44400076 44400328 -183124250 - AluSx SINE Alu -28 284 1 2086 222 49 56 chr3 44400328 44400707 -183123871 + MLT1E2 LTR MaLR 248 626 0 1537 189 80 13 chr3 44400731 44401106 -183123472 + L1ME2 LINE L1 5762 6164 0 984 271 46 60 chr3 44401164 44401577 -183123001 + L1MC4a LINE L1 5557 5963 -1845 1878 154 11 0 chr3 44401579 44401880 -183122698 + AluJo SINE Alu 3 306 0 863 176 6 31 chr3 44401922 44402081 -183122497 + FRAM SINE Alu 1 155 -21 2101 105 28 0 chr3 44402443 44402728 -183121850 + AluSx SINE Alu 1 293 -19 408 176 0 35 chr3 44402958 44403043 -183121535 + MLT1C LTR MaLR 386 467 0 3327 102 45 0 chr3 44403095 44403586 -183120992 + LTR10D LTR ERV1 1 513 0 248 294 128 9 chr3 44404752 44404861 -183119717 - MER117 DNA MER1_type -73 124 3 187 210 16 48 chr3 44405081 44405143 -183119435 + L2 LINE L2 2607 2666 -648 2245 115 13 0 chr3 44405597 44405901 -183118677 - AluSp SINE Alu -5 308 1 1887 164 0 10 chr3 44406362 44406667 -183117911 + AluJo SINE Alu 6 307 -5 2153 101 18 0 chr3 44406979 44407257 -183117321 + AluSx SINE Alu 6 288 -24 325 329 49 0 chr3 44407464 44407628 -183116950 - MIR SINE MIR -1 261 90 183 42 0 0 chr3 44408349 44408373 -183116205 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2429 78 0 0 chr3 44408375 44408671 -183115907 - AluSg SINE Alu -14 296 1 2016 138 3 6 chr3 44408831 44409142 -183115436 + AluSx SINE Alu 1 310 -2 898 188 0 0 chr3 44409142 44409315 -183115263 + AluSg/x SINE Alu 134 306 0 357 24 0 0 chr3 44409411 44409453 -183115125 + (CA)n Simple_repeat Simple_repeat 2 43 0 223 235 59 32 chr3 44409630 44409746 -183114832 + MIR SINE MIR 35 151 -62 365 211 38 83 chr3 44409775 44409908 -183114670 - L2 LINE L2 -2 3311 3185 2185 99 24 3 chr3 44410047 44410339 -183114239 - AluSx SINE Alu -14 298 1 823 53 119 20 chr3 44410370 44410521 -183114057 + AluYb8 SINE Alu 1 166 -152 204 338 110 15 chr3 44410812 44410948 -183113630 + L2 LINE L2 3124 3272 0 806 205 13 8 chr3 44411125 44411321 -183113257 + MLT1J LTR MaLR 5 163 -287 604 118 7 37 chr3 44411500 44411636 -183112942 + (TTTC)n Simple_repeat Simple_repeat 4 135 0 1329 185 34 14 chr3 44411652 44411944 -183112634 - L1MB3 LINE L1 -3 6180 5883 22 0 0 0 chr3 44411947 44411969 -183112609 + AT_rich Low_complexity Low_complexity 1 22 0 417 158 0 13 chr3 44411971 44412047 -183112531 - FLAM_A SINE Alu -21 121 47 2148 110 10 10 chr3 44412070 44412370 -183112208 - AluSc SINE Alu -9 300 1 460 206 21 10 chr3 44412756 44412853 -183111725 - AluJ/FLAM SINE Alu -210 102 5 358 288 31 31 chr3 44413432 44413592 -183110986 + MIR3 SINE MIR 9 168 -40 1972 122 0 0 chr3 44414079 44414342 -183110236 + AluSx SINE Alu 7 269 -43 1110 267 3 3 chr3 44414608 44414908 -183109670 - AluSx SINE Alu -2 300 1 498 304 92 17 chr3 44415926 44416131 -183108447 + MIR SINE MIR 1 228 -34 2277 152 27 5 chr3 44416131 44416539 -183108039 + L1MB5 LINE L1 5746 6162 -12 498 304 92 17 chr3 44416539 44416573 -183108005 + MIR SINE MIR 228 258 -4 1665 226 0 0 chr3 44417789 44418099 -183106479 + AluJb SINE Alu 3 312 0 263 179 0 30 chr3 44418100 44418167 -183106411 + GA-rich Low_complexity Low_complexity 2 66 0 768 101 8 214 chr3 44418275 44418513 -183106065 - MER53 DNA DNA 0 189 1 1058 215 68 11 chr3 44418675 44418940 -183105638 + MLT1A2 LTR MaLR 1 280 -94 261 213 0 16 chr3 44419130 44419191 -183105387 + AluJ/monomer SINE Alu 235 294 -6 2075 114 7 0 chr3 44419193 44419497 -183105081 + AluSx SINE Alu 1 306 0 1551 175 26 26 chr3 44419532 44419874 -183104704 - MLT1A1 LTR MaLR -5 360 19 381 267 9 19 chr3 44420693 44420798 -183103780 + MLT1K LTR MaLR 479 582 -6 2313 95 0 7 chr3 44421028 44421332 -183103246 + AluSx SINE Alu 1 302 -10 454 71 0 0 chr3 44421841 44421897 -183102681 - AluS SINE Alu -246 67 12 1728 159 44 10 chr3 44422281 44422577 -183102001 + AluJb SINE Alu 3 308 -4 1292 176 9 5 chr3 44423142 44423364 -183101214 + AluJb SINE Alu 83 305 -7 1735 181 0 7 chr3 44425046 44425338 -183099240 - AluJb SINE Alu -20 292 3 744 200 0 0 chr3 44425363 44425488 -183099090 + FLAM_C SINE Alu 1 125 -18 28 0 0 0 chr3 44425488 44425516 -183099062 + AT_rich Low_complexity Low_complexity 1 28 0 2429 83 0 3 chr3 44425557 44425869 -183098709 + AluY SINE Alu 1 311 0 276 30 0 0 chr3 44426015 44426048 -183098530 + (A)n Simple_repeat Simple_repeat 1 33 0 2212 121 3 0 chr3 44426190 44426496 -183098082 + AluSp SINE Alu 2 308 -5 2043 155 0 0 chr3 44426502 44426805 -183097773 + AluJb SINE Alu 1 303 -9 235 277 36 0 chr3 44426836 44426919 -183097659 + GA-rich Low_complexity Low_complexity 3 88 0 2268 108 3 3 chr3 44427666 44427962 -183096616 + AluSx SINE Alu 1 296 -16 2645 181 32 6 chr3 44428314 44428849 -183095729 - L1M4 LINE L1 -969 5177 4629 2083 130 13 0 chr3 44428850 44429149 -183095429 - AluSx SINE Alu -9 303 1 195 222 0 0 chr3 44429168 44429213 -183095365 + A-rich Low_complexity Low_complexity 4 48 0 574 156 0 11 chr3 44429229 44429319 -183095259 + AluJo SINE Alu 125 213 -99 319 290 112 63 chr3 44429349 44429618 -183094960 + HAL1 LINE L1 330 611 -1896 560 183 64 69 chr3 44429701 44429840 -183094738 + HAL1 LINE L1 908 1047 -1460 2333 106 3 0 chr3 44429840 44430143 -183094435 + AluSq SINE Alu 1 304 -9 560 183 64 69 chr3 44430143 44430205 -183094373 + HAL1 LINE L1 1047 1108 -1399 2400 180 36 39 chr3 44430210 44430404 -183094174 + L1MB7 LINE L1 5627 5820 -364 1773 143 19 56 chr3 44430404 44430726 -183093852 + AluSx SINE Alu 1 310 -2 2400 180 36 39 chr3 44430726 44431091 -183093487 + L1MB7 LINE L1 5820 6184 0 1764 237 83 39 chr3 44431088 44431243 -183093335 + HAL1 LINE L1 1095 1242 -1265 * 1614 136 118 21 chr3 44431243 44431522 -183093056 + AluJb SINE Alu 1 306 -6 1764 237 83 39 chr3 44431522 44432079 -183092499 + HAL1 LINE L1 1242 1838 -669 1255 240 58 41 chr3 44432676 44433039 -183091539 + MLT1J2 LTR MaLR 80 448 -2 206 200 0 0 chr3 44433398 44433433 -183091145 + (TGGA)n Simple_repeat Simple_repeat 2 36 0 517 228 126 0 chr3 44433450 44433665 -183090913 + HAL1 LINE L1 1973 2214 -293 2103 126 3 13 chr3 44433777 44434078 -183090500 + AluSx SINE Alu 1 298 -14 938 168 32 38 chr3 44434108 44434293 -183090285 + MLT1E LTR MaLR 1 184 -409 2556 74 0 0 chr3 44434295 44434605 -183089973 + AluY SINE Alu 1 310 -1 1194 105 0 61 chr3 44434605 44434786 -183089792 + MER1B DNA MER1_type 170 339 0 1522 175 81 67 chr3 44434786 44434816 -183089762 + L1MB4 LINE L1 4965 4993 -1175 2036 107 18 14 chr3 44434816 44435096 -183089482 + AluSq SINE Alu 1 281 -32 789 70 31 16 chr3 44435099 44435228 -183089350 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 1522 175 81 67 chr3 44435228 44435405 -183089173 + L1MB4 LINE L1 4994 5167 -1001 2100 83 32 7 chr3 44435405 44435721 -183088857 + AluSg SINE Alu 1 310 0 1522 175 81 67 chr3 44435721 44435924 -183088654 + L1MB4 LINE L1 5167 5380 -788 1569 154 0 93 chr3 44435924 44436086 -183088492 + AluJo SINE Alu 1 116 -196 2261 110 13 0 chr3 44436086 44436395 -183088183 + AluSp SINE Alu 1 313 0 1569 154 0 93 chr3 44436395 44436575 -183088003 + AluJo SINE Alu 116 311 -1 1522 175 81 67 chr3 44436575 44436683 -183087895 + L1MB4 LINE L1 5380 5485 -683 2400 97 0 0 chr3 44436723 44437032 -183087546 + AluSg SINE Alu 1 309 -1 1652 174 31 3 chr3 44437051 44437339 -183087239 + AluJb SINE Alu 1 296 -16 3608 147 37 34 chr3 44437348 44438030 -183086548 + L1MB4 LINE L1 5476 6162 -18 1715 187 151 46 chr3 44438030 44438575 -183086003 + MER7C DNA MER2_type 1 602 0 3608 147 37 34 chr3 44438575 44438594 -183085984 + L1MB4 LINE L1 6162 6179 -1 277 153 0 0 chr3 44438599 44438658 -183085920 + L1MB3 LINE L1 6125 6183 0 195 100 0 0 chr3 44439427 44439457 -183085121 + (CAT)n Simple_repeat Simple_repeat 1 30 0 1769 186 0 0 chr3 44440141 44440448 -183084130 + AluJb SINE Alu 1 307 -5 365 282 99 0 chr3 44441509 44441651 -183082927 + L1MC/D LINE L1 5624 5779 -2029 2299 74 0 20 chr3 44442260 44442559 -183082019 + AluY SINE Alu 1 293 -18 1255 167 111 0 chr3 44442570 44442804 -183081774 - AluJo SINE Alu -17 295 36 392 309 37 7 chr3 44447262 44447398 -183077180 - MIR SINE MIR -89 173 34 1651 190 28 3 chr3 44447863 44448147 -183076431 + AluJb SINE Alu 3 293 -19 459 215 108 0 chr3 44448317 44448447 -183076131 - L1MD3 LINE L1 -11 7984 7841 1808 157 13 7 chr3 44448875 44449181 -183075397 + AluJb SINE Alu 5 312 0 421 305 86 0 chr3 44449972 44450146 -183074432 - L2 LINE L2 -456 2858 2670 995 163 0 0 chr3 44450154 44450307 -183074271 + AluSg/x SINE Alu 142 294 -18 1152 148 0 44 chr3 44450330 44450513 -183074065 + AluJo SINE Alu 1 175 -137 291 316 195 5 chr3 44450513 44450703 -183073875 - L2 LINE L2 -4 3309 3084 656 221 171 22 chr3 44450880 44451067 -183073511 - L2 LINE L2 -314 2999 2760 1725 181 10 32 chr3 44451067 44451381 -183073197 - AluJo SINE Alu -5 307 1 656 221 171 22 chr3 44451381 44451468 -183073110 - L2 LINE L2 -553 2760 2687 328 265 73 7 chr3 44451553 44451689 -183072889 - L2 LINE L2 -612 2702 2558 694 160 0 24 chr3 44452304 44452429 -183072149 + FAM SINE Alu 1 47 -2 483 307 138 68 chr3 44452435 44452790 -183071788 - MLT1K LTR MaLR -181 407 28 1013 169 0 27 chr3 44453839 44454023 -183070555 + FRAM SINE Alu 1 174 -2 24 32 0 0 chr3 44454071 44454102 -183070476 + AT_rich Low_complexity Low_complexity 1 31 0 2161 118 3 0 chr3 44454129 44454426 -183070152 + AluSq SINE Alu 1 298 -15 2005 159 31 11 chr3 44454437 44454795 -183069783 + MLT1A1 LTR MaLR 1 365 0 1251 218 23 11 chr3 44454856 44455118 -183069460 + AluJo SINE Alu 22 286 -26 2222 113 20 0 chr3 44455301 44455603 -183068975 + AluSx SINE Alu 1 308 -4 2250 188 86 46 chr3 44456019 44456486 -183068092 + MLT1F LTR MaLR 1 493 -49 1890 131 27 14 chr3 44456486 44456783 -183067795 - AluSx SINE Alu -11 301 1 2250 188 86 46 chr3 44456783 44456836 -183067742 + MLT1F LTR MaLR 493 542 0 229 311 9 68 chr3 44457234 44457390 -183067188 + L2 LINE L2 2148 2289 -1025 987 228 45 5 chr3 44457390 44457592 -183066986 - MER63A DNA MER1_type 0 210 1 229 311 9 68 chr3 44457592 44457654 -183066924 + L2 LINE L2 2289 2353 -961 2093 136 3 0 chr3 44457693 44457987 -183066591 + AluSx SINE Alu 1 295 -17 743 188 0 26 chr3 44458106 44458260 -183066318 - LTR7 LTR ERV1 0 450 301 814 116 70 8 chr3 44458325 44458454 -183066124 - LTR7 LTR ERV1 -313 137 1 3562 131 9 9 chr3 44458454 44459011 -183065567 - HERVH LTR ERV1 0 7713 7157 1658 134 0 4 chr3 44459004 44459266 -183065312 - HERVH LTR ERV1 -1697 6016 5756 * 3620 158 10 14 chr3 44459257 44460035 -183064543 - HERVH LTR ERV1 -2297 4232 3809 3057 126 4 0 chr3 44460026 44460486 -183064092 - HERVH LTR ERV1 -4112 3601 3140 * 5063 126 4 30 chr3 44460465 44461294 -183063284 - HERVH LTR ERV1 -4718 2995 2189 2276 203 84 58 chr3 44461288 44462127 -183062451 - HERVH LTR ERV1 -6908 805 1 * 729 150 0 17 chr3 44462127 44462247 -183062331 - LTR7 LTR ERV1 0 450 333 2309 85 0 19 chr3 44462261 44462568 -183062010 - AluY SINE Alu -10 301 1 324 248 109 7 chr3 44463133 44463270 -183061308 + L2 LINE L2 1983 2133 -1181 1097 243 62 29 chr3 44463270 44463854 -183060724 + L2 LINE L2 2643 3240 -73 353 243 3 10 chr3 44464074 44464185 -183060393 + MIR SINE MIR 71 146 -62 2091 121 0 0 chr3 44464220 44464546 -183060032 + AluSx SINE Alu 1 326 0 242 196 0 0 chr3 44465416 44465462 -183059116 - MIR SINE MIR -6 256 211 185 225 50 0 chr3 44465499 44465539 -183059039 - MIR SINE MIR -175 87 46 2265 79 10 10 chr3 44466267 44466570 -183058008 + AluSx SINE Alu 1 303 -9 2556 43 10 0 chr3 44466664 44466968 -183057610 + AluY SINE Alu 1 307 -4 2240 112 7 7 chr3 44467046 44467350 -183057228 + AluSx SINE Alu 1 304 -8 243 146 0 0 chr3 44467350 44467391 -183057187 - MLT1K LTR MaLR -527 61 21 730 161 0 0 chr3 44467983 44468095 -183056483 + FLAM_C SINE Alu 2 113 -30 389 70 18 0 chr3 44468096 44468153 -183056425 + (TA)n Simple_repeat Simple_repeat 1 58 0 806 123 0 31 chr3 44468173 44468303 -183056275 + FRAM SINE Alu 51 176 0 413 206 0 31 chr3 44468425 44468522 -183056056 - L2 LINE L2 -2 3311 3218 271 202 10 101 chr3 44469180 44469279 -183055299 - MER102a DNA MER1_type -2 328 239 746 203 183 5 chr3 44470479 44470681 -183053897 - LTR16A1 LTR ERVL 0 457 220 487 214 20 0 chr3 44470751 44470849 -183053729 - LTR16A1 LTR ERVL -356 101 2 656 117 10 10 chr3 44471125 44471228 -183053350 - U13 snRNA snRNA -1 103 1 1431 129 9 0 chr3 44471770 44471980 -183052598 - AluSq SINE Alu -16 297 86 180 0 0 0 chr3 44471982 44472002 -183052576 + (T)n Simple_repeat Simple_repeat 1 20 0 972 225 0 108 chr3 44472153 44472285 -183052293 - L1ME LINE L1 -516 5654 5509 2109 133 0 7 chr3 44472285 44472585 -183051993 + AluSx SINE Alu 1 298 -14 972 225 0 108 chr3 44472585 44472709 -183051869 - L1ME LINE L1 -661 5509 5434 1954 156 23 7 chr3 44472709 44473016 -183051562 + AluJb SINE Alu 1 312 0 972 225 0 108 chr3 44473016 44473065 -183051513 - L1ME LINE L1 -736 5434 5381 885 199 0 12 chr3 44473153 44473319 -183051259 + FRAM SINE Alu 1 161 -15 23 78 0 0 chr3 44473952 44474003 -183050575 + AT_rich Low_complexity Low_complexity 1 51 0 2075 122 14 0 chr3 44474026 44474314 -183050264 + AluSx SINE Alu 1 292 -20 746 172 37 0 chr3 44474373 44474507 -183050071 + AluSp/q SINE Alu 167 305 -8 2338 106 0 16 chr3 44474509 44474821 -183049757 + AluSx SINE Alu 1 307 -5 1017 216 103 38 chr3 44474969 44475124 -183049454 - MER58B DNA MER1_type -2080 340 197 2207 110 3 0 chr3 44475124 44475423 -183049155 - AluSp SINE Alu -13 300 1 2408 84 33 0 chr3 44475424 44475723 -183048855 - AluSp SINE Alu -4 309 1 1017 216 103 38 chr3 44475723 44475884 -183048694 - MER58B DNA MER1_type -2222 198 1 784 171 82 0 chr3 44475918 44476064 -183048514 - AluJo/FRAM SINE Alu -8 294 137 390 126 0 109 chr3 44476064 44476176 -183048402 - AluSx SINE Alu 0 314 229 1418 113 5 0 chr3 44476176 44476361 -183048217 - AluSx SINE Alu -126 186 1 199 200 225 83 chr3 44476754 44476874 -183047704 - MIR SINE MIR -61 201 65 21 36 0 0 chr3 44477647 44477675 -183046903 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr3 44477704 44477725 -183046853 + (A)n Simple_repeat Simple_repeat 1 21 0 2226 86 16 41 chr3 44477725 44478040 -183046538 + AluSg SINE Alu 1 307 -3 544 244 60 86 chr3 44478061 44478101 -183046477 - L1MC5 LINE L1 -92 7869 7829 2533 59 0 3 chr3 44478101 44478404 -183046174 + AluY SINE Alu 1 302 -9 544 244 60 86 chr3 44478404 44478531 -183046047 - L1MC5 LINE L1 -132 7829 7700 1454 193 47 13 chr3 44478531 44478832 -183045746 - AluJb SINE Alu -1 311 1 544 244 60 86 chr3 44478832 44479021 -183045557 - L1MC5 LINE L1 -261 7700 7520 2553 69 0 3 chr3 44479021 44479325 -183045253 - AluSc SINE Alu -6 303 1 544 244 60 86 chr3 44479325 44479351 -183045227 - L1MC5 LINE L1 -441 7520 7495 425 246 8 30 chr3 44479329 44479453 -183045125 - L1MC5 LINE L1 -808 7153 7030 * 2385 66 0 3 chr3 44479453 44479769 -183044809 - AluSq SINE Alu 0 315 1 694 144 0 0 chr3 44479867 44479964 -183044614 - FLAM_C SINE Alu -19 124 28 2475 97 3 11 chr3 44480064 44480413 -183044165 + L1PA10 LINE L1 5807 6152 -16 1047 226 48 16 chr3 44480700 44480952 -183043626 - MIR SINE MIR -2 260 1 189 193 23 125 chr3 44481041 44481129 -183043449 - MIR SINE MIR -75 187 109 751 176 15 0 chr3 44482137 44482268 -183042310 - FLAM_A SINE Alu 0 133 1 1956 167 145 0 chr3 44483485 44483857 -183040721 - MSTB LTR MaLR 0 426 1 1840 124 47 34 chr3 44484282 44484580 -183039998 + AluJb SINE Alu 1 302 -10 282 291 101 0 chr3 44485313 44485461 -183039117 - L2 LINE L2 -413 2901 2739 663 250 176 0 chr3 44485561 44485749 -183038829 - AluYa8 SINE Alu -13 297 77 981 110 55 0 chr3 44486127 44486272 -183038306 - AluJb SINE Alu -159 153 1 231 88 0 0 chr3 44486274 44486308 -183038270 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 669 108 32 0 chr3 44486309 44486402 -183038176 - U6 snRNA snRNA -11 96 1 344 332 122 33 chr3 44486492 44487034 -183037544 - L2 LINE L2 -1137 2177 1588 3693 183 41 17 chr3 44487470 44488181 -183036397 + MER44D DNA MER2_type 5 604 -1 297 324 67 9 chr3 44489317 44489422 -183035156 + MIR SINE MIR 14 124 -138 1619 161 0 38 chr3 44489451 44489718 -183034860 + AluJb SINE Alu 1 257 -55 1697 118 0 4 chr3 44489818 44490046 -183034532 - AluSg SINE Alu -83 227 1 2184 129 3 7 chr3 44490191 44490501 -183034077 + AluJb SINE Alu 1 309 -3 1421 218 92 41 chr3 44490728 44491140 -183033438 - LTR16C LTR ERVL 0 491 59 1490 96 48 20 chr3 44491499 44491535 -183033043 + L1MA2 LINE L1 6044 6078 -226 2028 128 17 0 chr3 44491535 44491825 -183032753 + AluJo SINE Alu 5 299 -13 1490 96 48 20 chr3 44491825 44492038 -183032540 + L1MA2 LINE L1 6078 6300 -4 24 0 0 0 chr3 44492048 44492072 -183032506 + AT_rich Low_complexity Low_complexity 1 24 0 817 206 11 0 chr3 44492072 44492247 -183032331 + MER69 DNA AcHobo 2128 2304 -222 1958 125 6 39 chr3 44492287 44492598 -183031980 + AluJb SINE Alu 3 303 -9 630 200 75 0 chr3 44493137 44493257 -183031321 + MER3 DNA MER1_type 81 209 0 * 805 213 30 5 chr3 44493257 44493446 -183031132 + LTR16A1 LTR ERVL 264 457 0 1622 254 63 18 chr3 44493519 44494023 -183030555 - MLT1L LTR MaLR -2 613 87 786 171 0 41 chr3 44494115 44494261 -183030317 + FLAM_C SINE Alu 2 141 -2 198 304 14 14 chr3 44494312 44494381 -183030197 + MER5A DNA MER1_type 14 82 -107 252 0 0 0 chr3 44494448 44494476 -183030102 + (TAAAAA)n Simple_repeat Simple_repeat 2 29 0 1958 122 54 7 chr3 44494537 44494832 -183029746 + AluSx SINE Alu 1 309 -3 1035 169 0 6 chr3 44495382 44495573 -183029005 - AluSg/x SINE Alu 0 304 115 2161 98 51 0 chr3 44495589 44495884 -183028694 - AluSg SINE Alu 0 310 1 7977 173 40 17 chr3 44495886 44497359 -183027219 - MER52A LTR ERV1 0 1755 164 2392 102 3 0 chr3 44498385 44498689 -183025889 - AluSx SINE Alu -7 305 1 2139 130 0 0 chr3 44499019 44499333 -183025245 + AluSx SINE Alu 1 314 0 370 302 90 35 chr3 44499387 44499642 -183024936 + L3 LINE CR1 677 945 -632 970 184 0 0 chr3 44499696 44499859 -183024719 - AluJb SINE Alu -13 299 137 1232 202 106 32 chr3 44499955 44500332 -183024246 + LTR16A1 LTR ERVL 28 432 -25 389 342 93 32 chr3 44500335 44500459 -183024119 + L3 LINE CR1 1148 1263 -314 1653 144 27 62 chr3 44500459 44500607 -183023971 + AluJo SINE Alu 1 137 -175 1878 173 3 0 chr3 44500607 44500911 -183023667 + AluSx SINE Alu 1 305 0 1653 144 27 62 chr3 44500911 44500973 -183023605 + AluJo SINE Alu 137 282 -30 569 138 0 0 chr3 44500973 44501053 -183023525 + FRAM SINE Alu 67 146 -30 389 342 93 32 chr3 44501053 44501238 -183023340 + L3 LINE CR1 1263 1476 -101 2317 65 0 4 chr3 44501424 44501701 -183022877 - AluY SINE Alu -35 276 1 232 154 0 19 chr3 44501955 44502007 -183022571 + LTR33A LTR ERVL 332 382 -141 808 168 0 0 chr3 44503612 44503813 -183020765 + FLAM_C SINE Alu 12 212 0 21 57 0 0 chr3 44503878 44503913 -183020665 + AT_rich Low_complexity Low_complexity 1 35 0 2543 56 7 3 chr3 44504538 44504842 -183019736 - AluY SINE Alu -6 305 1 282 247 12 0 chr3 44505003 44505084 -183019494 - HAL1 LINE L1 -894 1613 1532 2275 103 0 7 chr3 44505251 44505561 -183019017 - AluSg SINE Alu 0 310 3 1658 185 24 3 chr3 44505563 44505860 -183018718 - AluJb SINE Alu -9 303 1 341 206 108 0 chr3 44505957 44506059 -183018519 - L1MC4a LINE L1 -1884 5924 5812 256 240 40 30 chr3 44506109 44506209 -183018369 - L1ME1 LINE L1 -18 6148 6048 240 258 66 66 chr3 44506217 44506461 -183018117 - L1ME3A LINE L1 -85 6085 5842 2209 68 7 0 chr3 44506660 44506969 -183017609 - AluY SINE Alu 0 311 1 4197 129 93 117 chr3 44507079 44508525 -183016053 + pTR5 LTR ERV1 741 2438 0 247 283 47 9 chr3 44508527 44508639 -183015939 - MIR SINE MIR -62 146 38 2480 67 0 0 chr3 44509032 44509331 -183015247 + AluY SINE Alu 1 299 -12 195 367 101 0 chr3 44509402 44509511 -183015067 + MIR SINE MIR 22 141 -67 32 0 0 0 chr3 44509604 44509636 -183014942 + AT_rich Low_complexity Low_complexity 1 32 0 2133 112 0 0 chr3 44509636 44509912 -183014666 - AluSg SINE Alu -21 289 14 342 271 153 67 chr3 44510620 44510839 -183013739 + L1MC4a LINE L1 5391 5590 -533 2359 94 0 0 chr3 44510839 44511148 -183013430 - AluSc SINE Alu 0 309 1 342 271 153 67 chr3 44511148 44511394 -183013184 + L1MC4a LINE L1 5590 5894 -229 228 217 24 12 chr3 44511426 44511509 -183013069 + (TA)n Simple_repeat Simple_repeat 1 84 0 2080 118 7 0 chr3 44511920 44512224 -183012354 + AluSx SINE Alu 1 306 0 627 195 0 8 chr3 44512233 44512351 -183012227 + FLAM_C SINE Alu 1 117 -16 415 374 92 23 chr3 44512570 44512875 -183011703 - L2 LINE L2 -631 2683 2358 2200 125 0 0 chr3 44513090 44513387 -183011191 + AluSx SINE Alu 3 299 -13 230 256 98 12 chr3 44513408 44513490 -183011088 - L2 LINE L2 -39 3233 3145 1311 93 98 28 chr3 44513506 44513721 -183010857 + MER30 DNA MER1_type 1 230 0 393 200 146 0 chr3 44513834 44513944 -183010634 - MIR SINE MIR -53 209 84 2372 88 0 10 chr3 44514172 44514479 -183010099 - AluSq SINE Alu -9 304 1 243 139 0 0 chr3 44514504 44514540 -183010038 - MIR SINE MIR -226 36 1 230 250 0 0 chr3 44515417 44515465 -183009113 + (CATATA)n Simple_repeat Simple_repeat 1 48 0 2138 134 0 0 chr3 44515583 44515881 -183008697 - AluSx SINE Alu -14 298 1 183 42 0 0 chr3 44515900 44515924 -183008654 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 3481 118 9 24 chr3 44515958 44516492 -183008086 - MER1A DNA MER1_type 0 527 2 302 306 129 102 chr3 44517282 44517880 -183006698 - L1M2 LINE L1 -5464 1385 772 378 241 65 35 chr3 44519253 44519452 -183005126 + L1ME LINE L1 5618 5822 -299 673 234 54 0 chr3 44519452 44519619 -183004959 - MIR SINE MIR -11 251 76 752 94 0 0 chr3 44520018 44520124 -183004454 - AluSq/x SINE Alu -206 106 1 503 178 168 10 chr3 44520228 44520329 -183004249 + AluJo/FLAM SINE Alu 1 117 -185 1650 90 173 12 chr3 44520329 44520584 -183003994 + AluSg1 SINE Alu 1 296 -13 1627 116 30 0 chr3 44520776 44521044 -183003534 + L1MB3 LINE L1 5892 6167 -16 23 33 0 0 chr3 44521169 44521199 -183003379 + AT_rich Low_complexity Low_complexity 1 30 0 185 233 100 78 chr3 44521712 44521802 -183002776 - L2 LINE L2 -225 3047 2956 1655 199 118 51 chr3 44521819 44522346 -183002232 - MLT1E1 LTR MaLR 0 654 93 750 179 8 0 chr3 44522412 44522535 -183002043 - FLAM_C SINE Alu -19 124 1 1048 138 38 0 chr3 44523666 44523826 -183000752 - AluSg/x SINE Alu -3 309 144 306 221 95 11 chr3 44523963 44524058 -183000520 - LTR67 LTR ERVL -7 550 448 355 343 66 12 chr3 44524189 44524355 -183000223 - LTR67 LTR ERVL -296 261 87 21 71 0 0 chr3 44524504 44524546 -183000032 + AT_rich Low_complexity Low_complexity 1 42 0 238 220 0 17 chr3 44524659 44524718 -182999860 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 563 170 15 43 chr3 44525249 44525390 -182999188 - L1MD3 LINE L1 0 7995 6190 206 333 58 11 chr3 44525390 44525477 -182999101 - MIR SINE MIR -69 139 49 201 108 0 0 chr3 44525922 44525959 -182998619 + (TATG)n Simple_repeat Simple_repeat 4 40 0 1494 157 13 0 chr3 44525959 44526189 -182998389 - AluJb SINE Alu -26 286 54 280 261 248 6 chr3 44526400 44526561 -182998017 - L1ME3A LINE L1 -8 6162 5963 22 0 0 0 chr3 44526579 44526601 -182997977 + AT_rich Low_complexity Low_complexity 1 22 0 1005 225 87 42 chr3 44526638 44527228 -182997350 - L1ME3A LINE L1 -405 5757 5152 1569 166 83 14 chr3 44527229 44527349 -182997229 + AluJo SINE Alu 1 111 -201 180 0 0 0 chr3 44527349 44527369 -182997209 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1569 166 83 14 chr3 44527369 44527525 -182997053 + AluJo SINE Alu 111 296 -16 21 71 0 0 chr3 44527652 44527694 -182996884 + AT_rich Low_complexity Low_complexity 1 42 0 2194 100 24 0 chr3 44528003 44528294 -182996284 + AluSx SINE Alu 1 298 -14 1213 119 6 11 chr3 44528610 44528787 -182995791 + AluSg/x SINE Alu 117 292 -18 3600 117 45 18 chr3 44528787 44529330 -182995248 - L1PB2 LINE L1 -5 6146 5584 2361 103 0 22 chr3 44529330 44529649 -182994929 + AluSx SINE Alu 1 312 0 3600 117 45 18 chr3 44529649 44529705 -182994873 - L1PB2 LINE L1 -567 5584 5531 2167 119 3 0 chr3 44529863 44530156 -182994422 - AluSx SINE Alu -18 294 1 2234 110 3 0 chr3 44530717 44531016 -182993562 - AluSq SINE Alu -12 301 2 231 321 0 0 chr3 44531035 44531091 -182993487 + L2 LINE L2 3177 3232 -40 2054 148 0 0 chr3 44531167 44531478 -182993100 - AluSx SINE Alu 0 312 2 1482 126 0 0 chr3 44531654 44531878 -182992700 - AluSg/x SINE Alu 0 309 86 21 36 0 0 chr3 44532007 44532035 -182992543 + AT_rich Low_complexity Low_complexity 1 28 0 1844 168 42 47 chr3 44532486 44532938 -182991640 - MER65C LTR ERV1 -11 450 1 3260 87 43 1 chr3 44533735 44534459 -182990119 - L1PA11 LINE L1 -409 5759 5006 1158 77 0 0 chr3 44534462 44534618 -182989960 + L1PA11 LINE L1 5735 5890 -284 308 193 281 0 chr3 44534999 44535113 -182989465 - MER103 DNA DNA -7 159 14 27 73 0 0 chr3 44535143 44535198 -182989380 + AT_rich Low_complexity Low_complexity 1 55 0 4380 147 36 15 chr3 44535246 44536103 -182988475 - L1MB7 LINE L1 -19 6165 5291 2214 108 3 0 chr3 44536222 44536519 -182988059 - AluSg SINE Alu -12 298 1 1826 96 0 0 chr3 44537499 44537728 -182986850 - AluSg/x SINE Alu -13 299 71 2824 174 29 4 chr3 44537878 44538437 -182986141 - L1MB4 LINE L1 -7 6173 5601 2203 129 0 3 chr3 44538445 44538756 -182985822 - AluSx SINE Alu -2 310 1 21 0 0 0 chr3 44538936 44538957 -182985621 + AT_rich Low_complexity Low_complexity 1 21 0 279 313 192 20 chr3 44539825 44540023 -182984555 + L2 LINE L2 3033 3264 -8 3870 124 120 9 chr3 44540529 44541188 -182983390 - MER44D DNA MER2_type -1 604 1 260 312 72 63 chr3 44541274 44541474 -182983104 - L2 LINE L2 -524 2790 2586 1382 119 26 56 chr3 44541474 44541688 -182982890 + L1MB7 LINE L1 5905 6111 -73 1952 171 0 0 chr3 44541688 44541987 -182982591 - AluSx SINE Alu -13 299 1 1382 119 26 56 chr3 44541987 44542041 -182982537 + L1MB7 LINE L1 6111 6165 -19 260 312 72 63 chr3 44542041 44542077 -182982501 - L2 LINE L2 -728 2586 2552 655 175 10 0 chr3 44543655 44543790 -182980788 + FRAM SINE Alu 43 178 0 2485 84 0 0 chr3 44544810 44545121 -182979457 - AluSq SINE Alu -2 311 1 2251 103 0 3 chr3 44545370 44545689 -182978889 + AluSx SINE Alu 3 312 0 198 150 0 0 chr3 44545719 44545759 -182978819 + (A)n Simple_repeat Simple_repeat 1 40 0 259 302 214 6 chr3 44546055 44546214 -182978364 - MIR SINE MIR -18 244 53 446 226 12 0 chr3 44547067 44547151 -182977427 + MIR3 SINE MIR 101 185 -23 916 161 94 21 chr3 44547411 44547603 -182976975 - MER3 DNA MER1_type -2 207 2 26 30 0 0 chr3 44547782 44547815 -182976763 + AT_rich Low_complexity Low_complexity 1 33 0 1882 136 11 11 chr3 44548208 44548526 -182976052 + AluSx SINE Alu 1 318 0 3075 38 3 0 chr3 44549406 44549777 -182974801 + L1PA5 LINE L1 5782 6153 -1 396 0 0 0 chr3 44549809 44549853 -182974725 + (CA)n Simple_repeat Simple_repeat 2 45 0 235 128 0 0 chr3 44550902 44550949 -182973629 - L1PB3 LINE L1 0 6154 6108 2291 99 10 0 chr3 44551290 44551592 -182972986 + AluSp SINE Alu 1 305 -8 2074 122 3 13 chr3 44551733 44552036 -182972542 + AluSx SINE Alu 1 300 -12 1164 157 56 60 chr3 44553332 44553581 -182970997 + AluJb SINE Alu 1 248 -64 26 30 0 0 chr3 44553704 44553737 -182970841 + AT_rich Low_complexity Low_complexity 1 33 0 21 57 0 0 chr3 44554078 44554113 -182970465 + AT_rich Low_complexity Low_complexity 1 35 0 571 203 63 63 chr3 44555153 44555258 -182969320 + MER112 DNA MER1_type 79 186 -74 1635 179 0 40 chr3 44555258 44555559 -182969019 + AluJo SINE Alu 1 289 -23 571 203 63 63 chr3 44555559 44555611 -182968967 + MER112 DNA MER1_type 185 236 -24 25 0 0 0 chr3 44556476 44556501 -182968077 + AT_rich Low_complexity Low_complexity 1 25 0 1820 168 0 26 chr3 44556885 44557194 -182967384 - AluJo SINE Alu -11 301 1 1470 174 54 50 chr3 44558093 44558391 -182966187 + AluJo SINE Alu 1 299 -13 1544 93 9 0 chr3 44559330 44559544 -182965034 - AluSg/x SINE Alu 0 310 95 409 113 0 0 chr3 44559544 44559606 -182964972 - AluS SINE Alu -248 62 1 224 215 0 63 chr3 44559889 44559968 -182964610 + G-rich Low_complexity Low_complexity 1 74 0 188 83 0 28 chr3 44561948 44561984 -182962594 + (TTTTTG)n Simple_repeat Simple_repeat 6 40 0 296 272 130 0 chr3 44562839 44562931 -182961647 - MARNA DNA Mariner -62 524 421 21 36 0 0 chr3 44563852 44563880 -182960698 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr3 44564108 44564138 -182960440 + AT_rich Low_complexity Low_complexity 1 30 0 2288 82 14 0 chr3 44564496 44564788 -182959790 + AluSp SINE Alu 3 298 -15 226 264 64 36 chr3 44564802 44564912 -182959666 - L1MC/D LINE L1 -2056 5752 5640 821 283 5 5 chr3 44564950 44565169 -182959409 - AluJo SINE Alu -93 219 1 2156 115 0 0 chr3 44565624 44565912 -182958666 - AluSx SINE Alu -24 288 1 1018 170 0 12 chr3 44566687 44566852 -182957726 + FRAM SINE Alu 2 164 -2 260 326 54 8 chr3 44567413 44567542 -182957036 + MIR SINE MIR 121 255 -7 905 301 84 25 chr3 44567761 44568167 -182956411 - L2 LINE L2 -8 3305 2876 2206 121 0 10 chr3 44568893 44569199 -182955379 + AluSx SINE Alu 1 303 -9 626 205 63 47 chr3 44569299 44569553 -182955025 - L1MC5 LINE L1 -90 7871 7614 1871 186 0 0 chr3 44570001 44570312 -182954266 - AluJo SINE Alu -1 311 1 2231 112 0 3 chr3 44570316 44570619 -182953959 - AluSg SINE Alu -8 302 1 227 322 0 0 chr3 44571251 44571341 -182953237 + L1MC4 LINE L1 6614 6703 -1339 * 234 315 0 0 chr3 44571265 44571354 -182953224 - L1MC4 LINE L1 -1339 6703 6615 876 130 0 22 chr3 44571360 44571498 -182953080 - FRAM SINE Alu -23 153 19 231 145 226 0 chr3 44571522 44571584 -182952994 + MER58 DNA MER1_type 2321 2396 -24 235 213 49 0 chr3 44571728 44571789 -182952789 - Charlie8 DNA MER1_type -2296 121 58 23 33 0 0 chr3 44572269 44572299 -182952279 + AT_rich Low_complexity Low_complexity 1 30 0 2306 96 0 16 chr3 44573002 44573315 -182951263 + AluSx SINE Alu 1 308 -4 665 48 0 0 chr3 44573331 44573415 -182951163 + L1PA5 LINE L1 6069 6152 -2 273 319 53 0 chr3 44573893 44573987 -182950591 + MIR3 SINE MIR 81 179 -29 258 319 0 29 chr3 44573993 44574131 -182950447 + L1MC/D LINE L1 5723 5856 -1952 580 219 152 17 chr3 44574131 44574309 -182950269 - L2 LINE L2 0 3313 3112 1512 124 47 94 chr3 44575573 44575748 -182948830 - MER33 DNA MER1_type -2262 323 170 1887 139 7 42 chr3 44575748 44576058 -182948520 + AluSx SINE Alu 1 299 -13 1512 124 47 94 chr3 44576058 44576221 -182948357 - MER33 DNA MER1_type -2415 170 1 23 0 0 0 chr3 44577434 44577457 -182947121 + AT_rich Low_complexity Low_complexity 1 23 0 421 331 86 74 chr3 44577564 44578056 -182946522 - L2 LINE L2 -93 3179 2679 703 120 0 0 chr3 44578460 44578560 -182946018 + HY3 scRNA scRNA 1 100 -1 2131 93 0 4 chr3 44578573 44578853 -182945725 + AluSg SINE Alu 17 295 -15 208 336 164 19 chr3 44579001 44579105 -182945473 - L2 LINE L2 -21 3251 3133 21 0 0 0 chr3 44579693 44579714 -182944864 + AT_rich Low_complexity Low_complexity 1 21 0 32 75 0 0 chr3 44579793 44579860 -182944718 + AT_rich Low_complexity Low_complexity 1 67 0 969 133 0 0 chr3 44580458 44580601 -182943977 - FLAM_C SINE Alu 0 143 1 2144 103 0 4 chr3 44581168 44581480 -182943098 + AluSx SINE Alu 4 314 0 205 211 0 0 chr3 44582367 44582405 -182942173 + (TA)n Simple_repeat Simple_repeat 1 38 0 26 50 0 0 chr3 44582509 44582549 -182942029 + AT_rich Low_complexity Low_complexity 1 40 0 1558 174 54 20 chr3 44582866 44583164 -182941414 - AluJo SINE Alu -4 308 1 831 139 16 0 chr3 44583171 44583300 -182941278 - FLAM_C SINE Alu -2 131 1 788 203 33 16 chr3 44583603 44583785 -182940793 - MER5A DNA MER1_type 0 189 5 2187 113 0 3 chr3 44583805 44584105 -182940473 + AluSx SINE Alu 1 299 -13 1702 170 42 3 chr3 44584545 44584834 -182939744 + AluJb SINE Alu 1 300 -12 3802 160 43 26 chr3 44584857 44585813 -182938765 - L1MB8 LINE L1 -12 6166 5227 2205 101 0 7 chr3 44585813 44586109 -182938469 + AluSg SINE Alu 1 294 -16 3802 160 43 26 chr3 44586109 44586151 -182938427 - L1MB8 LINE L1 -951 5227 5187 2079 127 0 35 chr3 44586151 44586467 -182938111 - AluSx SINE Alu -7 305 1 3802 160 43 26 chr3 44586467 44586765 -182937813 - L1MB8 LINE L1 -991 5187 4799 1721 170 7 16 chr3 44587008 44587314 -182937264 - AluJb SINE Alu -9 303 1 24 0 0 0 chr3 44588224 44588248 -182936330 + AT_rich Low_complexity Low_complexity 1 24 0 1944 131 11 50 chr3 44588969 44589328 -182935250 + L1MC1 LINE L1 5970 6314 -19 1937 127 19 29 chr3 44589783 44590091 -182934487 - AluJb SINE Alu -5 307 3 23 0 0 0 chr3 44590416 44590439 -182934139 + AT_rich Low_complexity Low_complexity 1 23 0 1062 205 177 12 chr3 44590439 44590693 -182933885 - AluJo SINE Alu -16 296 1 1380 217 72 36 chr3 44590701 44591231 -182933347 - L1MC5 LINE L1 -259 7702 7154 292 71 36 0 chr3 44591241 44591297 -182933281 + (TTTTA)n Simple_repeat Simple_repeat 2 59 0 2129 83 18 0 chr3 44591300 44591577 -182933001 - AluSp SINE Alu -31 282 1 4446 165 37 21 chr3 44591589 44592105 -182932473 - L1MB8 LINE L1 -1 6177 5642 792 155 31 0 chr3 44592105 44592234 -182932344 - FLAM_C SINE Alu 0 133 1 4446 165 37 21 chr3 44592234 44592668 -182931910 - L1MB8 LINE L1 -536 5642 5216 1077 237 117 88 chr3 44592658 44593523 -182931055 - L1MC5 LINE L1 -884 6924 6086 * 2284 148 30 16 chr3 44593523 44593955 -182930623 - L1MB2 LINE L1 -4 6167 5730 1077 237 117 88 chr3 44593955 44594808 -182929770 - L1MC5 LINE L1 -1722 6086 5288 2487 70 3 0 chr3 44594808 44595110 -182929468 - AluSp SINE Alu -10 303 1 1077 237 117 88 chr3 44595110 44595126 -182929452 - L1MC5 LINE L1 -2520 5288 5274 1741 162 3 14 chr3 44595157 44595453 -182929125 - AluJb SINE Alu -19 293 1 959 282 68 35 chr3 44595628 44596361 -182928217 - L1MC5 LINE L1 -1133 5013 4257 27 49 0 0 chr3 44598275 44598316 -182926262 + AT_rich Low_complexity Low_complexity 1 41 0 2443 90 0 3 chr3 44599165 44599476 -182925102 - AluSx SINE Alu -2 310 1 1255 177 55 37 chr3 44600195 44600466 -182924112 + AluJo SINE Alu 14 289 -23 2071 113 21 0 chr3 44600955 44601239 -182923339 - AluSx SINE Alu -20 292 3 435 303 56 0 chr3 44601242 44601420 -182923158 - L1MB5 LINE L1 -37 6137 5950 861 121 16 0 chr3 44601421 44601545 -182923033 - AluSg/x SINE Alu -13 299 174 1071 202 47 28 chr3 44601773 44602026 -182922552 + AluJb SINE Alu 49 306 -6 1527 207 34 20 chr3 44602032 44602390 -182922188 - L1MD1 LINE L1 -67 6175 5813 3682 124 74 17 chr3 44602398 44603049 -182921529 - L1MB3 LINE L1 -7 6176 5489 545 266 56 52 chr3 44604256 44604489 -182920089 + MIR SINE MIR 28 261 -1 236 276 17 0 chr3 44604996 44605054 -182919524 - MIR SINE MIR -91 171 113 21 36 0 0 chr3 44607007 44607035 -182917543 + AT_rich Low_complexity Low_complexity 1 28 0 2006 102 48 30 chr3 44607529 44607824 -182916754 - AluSx SINE Alu -12 300 1 2722 256 90 35 chr3 44608580 44609765 -182914813 - HAL1 LINE L1 -26 2481 1231 430 209 123 61 chr3 44609765 44609928 -182914650 - L2 LINE L2 -3 3310 3138 1206 281 77 23 chr3 44609945 44610375 -182914203 - L2 LINE L2 -2119 1195 743 772 97 0 182 chr3 44610375 44610447 -182914131 - MSTB LTR MaLR 0 426 403 1911 113 72 10 chr3 44610447 44610739 -182913839 + AluSx SINE Alu 1 310 -2 772 97 0 182 chr3 44610739 44610842 -182913736 - MSTB LTR MaLR -23 403 283 779 75 0 0 chr3 44610842 44610936 -182913642 - AluS SINE Alu -217 95 2 1812 136 18 0 chr3 44610938 44611218 -182913360 - MSTB LTR MaLR -138 288 4 1551 244 139 37 chr3 44611218 44611531 -182913047 - L2 LINE L2 -2567 747 467 2100 102 21 0 chr3 44611531 44611843 -182912735 + AluSx SINE Alu 1 318 0 1551 244 139 37 chr3 44611843 44612174 -182912404 - L2 LINE L2 -2847 467 35 2324 96 0 0 chr3 44612334 44612627 -182911951 - AluSc SINE Alu -16 293 1 799 188 8 8 chr3 44612770 44612903 -182911675 - FLAM_A SINE Alu 0 133 1 283 259 12 12 chr3 44613034 44613115 -182911463 + L2 LINE L2 3230 3310 -3 2168 121 0 7 chr3 44613437 44613742 -182910836 - AluSx SINE Alu -9 303 1 827 196 7 0 chr3 44614468 44614606 -182909972 + FLAM_C SINE Alu 2 140 -3 224 315 54 45 chr3 44614686 44614797 -182909781 - L2 LINE L2 -589 2725 2614 2287 70 0 0 chr3 44615409 44615681 -182908897 + AluY SINE Alu 29 300 -11 194 273 91 40 chr3 44615985 44616084 -182908494 - L2 LINE L2 -3 3269 3166 2305 71 0 30 chr3 44616554 44616851 -182907727 - AluSc SINE Alu -21 288 1 23 33 0 0 chr3 44618833 44618863 -182905715 + AT_rich Low_complexity Low_complexity 1 30 0 2302 113 0 0 chr3 44619574 44619875 -182904703 - AluSx SINE Alu -11 301 1 2030 128 0 10 chr3 44619877 44620174 -182904404 - AluSx SINE Alu -18 294 1 2281 86 3 16 chr3 44620785 44621089 -182903489 + AluSq SINE Alu 2 301 -12 998 195 12 0 chr3 44621825 44621989 -182902589 - FRAM SINE Alu 0 166 1 2121 114 10 7 chr3 44624101 44624400 -182900178 - AluSx SINE Alu -12 300 1 239 133 204 51 chr3 44625074 44625172 -182899406 - L1MEc LINE L1 -4430 1966 1854 * 7466 195 48 42 chr3 44625147 44625231 -182899347 + L1M4 LINE L1 2397 2479 -3667 2415 72 10 0 chr3 44625231 44625521 -182899057 + AluY SINE Alu 1 293 -18 282 56 0 0 chr3 44625521 44625557 -182899021 + (TA)n Simple_repeat Simple_repeat 2 37 0 7466 195 48 42 chr3 44625557 44626125 -182898453 + L1M4 LINE L1 2479 3042 -3104 2216 93 26 23 chr3 44626125 44626435 -182898143 + AluSx SINE Alu 1 311 -1 7466 195 48 42 chr3 44626435 44627450 -182897128 + L1M4 LINE L1 3042 4049 -2097 1746 166 0 0 chr3 44627450 44627715 -182896863 - AluSx SINE Alu -47 265 1 7466 195 48 42 chr3 44627715 44627792 -182896786 + L1M4 LINE L1 4049 4124 -2022 2196 88 3 7 chr3 44627792 44628099 -182896479 + AluSq SINE Alu 1 306 0 7466 195 48 42 chr3 44628099 44628304 -182896274 + L1M4 LINE L1 4124 4326 -1820 1361 163 109 42 chr3 44628304 44628587 -182895991 + AluJo SINE Alu 1 302 -10 2313 96 0 22 chr3 44628592 44628904 -182895674 + AluSx SINE Alu 1 305 -7 7466 195 48 42 chr3 44628904 44628966 -182895612 + L1M4 LINE L1 4329 4434 -1712 333 150 50 0 chr3 44628974 44629034 -182895544 + L1M4 LINE L1 4563 4625 -1521 2172 110 10 0 chr3 44629265 44629555 -182895023 - AluSx SINE Alu -19 293 1 264 292 108 23 chr3 44630542 44630672 -182893906 - MIR SINE MIR -114 148 8 401 310 33 16 chr3 44631016 44631200 -182893378 + MER117 DNA MER1_type 2 188 -9 454 277 104 39 chr3 44631500 44631563 -182893015 - MIR SINE MIR -9 253 196 261 0 0 0 chr3 44631563 44631592 -182892986 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 454 277 104 39 chr3 44631592 44631759 -182892819 - MIR SINE MIR -66 196 8 1049 280 104 77 chr3 44632089 44633247 -182891331 + L1MEd LINE L1 60 1248 -4871 290 330 0 9 chr3 44633377 44633492 -182891086 + HAL1 LINE L1 1490 1603 -904 1835 143 49 23 chr3 44633541 44633849 -182890729 + MLT1A1 LTR MaLR 2 317 -48 13011 122 43 77 chr3 44633988 44634192 -182890386 - Tigger1 DNA MER2_type 0 2418 2209 2042 146 0 7 chr3 44634192 44634501 -182890077 + AluSx SINE Alu 1 307 -5 13011 122 43 77 chr3 44634501 44636102 -182888476 - Tigger1 DNA MER2_type -209 2209 717 2011 127 3 0 chr3 44636102 44636386 -182888192 - AluSx SINE Alu -7 305 21 13011 122 43 77 chr3 44636386 44637049 -182887529 - Tigger1 DNA MER2_type -1701 717 33 361 266 112 64 chr3 44637079 44637427 -182887151 + L1ME3A LINE L1 5035 5365 -805 1892 151 0 0 chr3 44637427 44637698 -182886880 - AluSx SINE Alu -41 271 1 361 266 112 64 chr3 44637698 44638186 -182886392 + L1ME3A LINE L1 5365 5951 -219 311 284 68 61 chr3 44638242 44638390 -182886188 + L1ME3A LINE L1 5934 6082 -88 275 303 9 9 chr3 44638410 44638519 -182886059 + (TA)n Simple_repeat Simple_repeat 1 109 0 320 313 52 0 chr3 44640053 44640149 -182884429 - L2 LINE L2 0 3272 3172 2187 99 31 0 chr3 44641565 44641859 -182882719 - AluY SINE Alu -8 303 1 1716 160 52 3 chr3 44642019 44642306 -182882272 + AluJb SINE Alu 1 301 -11 439 255 112 32 chr3 44642657 44642845 -182881733 - MIR SINE MIR -40 222 20 207 156 0 0 chr3 44643650 44643682 -182880896 + (TCCA)n Simple_repeat Simple_repeat 3 34 0 310 218 74 113 chr3 44643705 44643758 -182880820 - L2 LINE L2 -67 3246 3192 2219 113 0 0 chr3 44643758 44644058 -182880520 - AluSx SINE Alu -9 303 4 310 218 74 113 chr3 44644058 44644233 -182880345 - L2 LINE L2 -121 3192 3027 630 148 0 0 chr3 44644235 44644323 -182880255 - AluS SINE Alu -224 89 2 232 359 226 4 chr3 44644335 44644583 -182879995 - L2 LINE L2 -343 2971 2669 * 246 282 98 81 chr3 44644541 44644715 -182879863 + MIR SINE MIR 86 262 0 1147 136 0 12 chr3 44644730 44644899 -182879679 - AluJb SINE Alu -11 301 135 275 0 29 0 chr3 44644899 44644934 -182879644 + (TG)n Simple_repeat Simple_repeat 2 37 0 454 164 82 0 chr3 44644934 44645007 -182879571 - AluJ/FLAM SINE Alu -233 79 1 209 225 0 0 chr3 44645059 44645099 -182879479 - MIR SINE MIR -100 108 69 212 308 75 17 chr3 44645110 44645230 -182879348 + MIR SINE MIR 83 209 -53 261 0 0 0 chr3 44645264 44645293 -182879285 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2347 92 3 0 chr3 44645354 44645658 -182878920 - AluSq SINE Alu -8 305 1 180 0 0 0 chr3 44646504 44646524 -182878054 + (A)n Simple_repeat Simple_repeat 1 20 0 225 0 0 0 chr3 44646524 44646549 -182878029 + (TA)n Simple_repeat Simple_repeat 1 25 0 1307 121 84 5 chr3 44646803 44647018 -182877560 - L1MB3 LINE L1 0 6183 5952 1374 239 9 12 chr3 44647020 44647355 -182877223 + L1MC4 LINE L1 6695 7028 -1014 182 139 47 0 chr3 44647419 44647462 -182877116 + GA-rich Low_complexity Low_complexity 6 50 0 688 261 32 24 chr3 44647463 44647716 -182876862 + L1MC5 LINE L1 6963 7217 -744 284 276 43 9 chr3 44647751 44647867 -182876711 + L1MC4 LINE L1 7323 7442 -600 228 259 17 0 chr3 44647983 44648041 -182876537 + (CATATA)n Simple_repeat Simple_repeat 6 64 0 4228 171 41 67 chr3 44648050 44648972 -182875606 + MER21A LTR ERV1 11 908 -23 254 306 24 12 chr3 44649622 44649707 -182874871 + L2 LINE L2 2643 2728 -586 712 211 42 18 chr3 44649832 44649998 -182874580 - MER5B DNA MER1_type -8 170 1 476 295 143 61 chr3 44650002 44650344 -182874234 + L2 LINE L2 2880 3249 -23 368 294 10 10 chr3 44651007 44651109 -182873469 - MIR3 SINE MIR -9 199 98 263 296 87 9 chr3 44651318 44651433 -182873145 - L3 LINE CR1 -77 1500 1377 699 265 39 0 chr3 44651919 44652100 -182872478 + MIR SINE MIR 2 189 -73 2320 83 0 0 chr3 44652111 44652401 -182872177 + AluSc SINE Alu 1 290 -19 323 197 33 0 chr3 44652479 44652540 -182872038 + MIR SINE MIR 76 138 -70 483 215 236 7 chr3 44652632 44652776 -182871802 + LTR41 LTR ERVL 1 177 -596 537 258 78 45 chr3 44652897 44653141 -182871437 + LTR41 LTR ERVL 515 766 -7 2183 118 3 0 chr3 44653231 44653527 -182871051 + AluSx SINE Alu 1 297 -15 193 351 64 43 chr3 44653657 44653751 -182870827 + L2 LINE L2 3150 3245 -27 2383 84 0 3 chr3 44653846 44654144 -182870434 - AluSg SINE Alu -13 297 1 241 276 0 0 chr3 44654300 44654358 -182870220 + L2 LINE L2 3215 3272 0 189 0 0 0 chr3 44655732 44655753 -182868825 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 456 123 0 0 chr3 44657883 44657956 -182866622 + (CCCA)n Simple_repeat Simple_repeat 3 75 0 228 306 28 28 chr3 44657957 44658029 -182866549 - L2 LINE L2 -8 3305 3234 614 320 59 77 chr3 44658220 44658595 -182865983 + L2 LINE L2 2898 3265 -7 2504 74 0 3 chr3 44658924 44659233 -182865345 + AluY SINE Alu 1 308 -3 324 290 60 30 chr3 44659601 44659701 -182864877 + L2 LINE L2 3169 3271 -1 2404 90 0 10 chr3 44660597 44660909 -182863669 - AluSq SINE Alu -4 309 1 2250 91 3 36 chr3 44661283 44661591 -182862987 + AluSx SINE Alu 1 298 -14 2333 103 3 3 chr3 44661699 44662010 -182862568 + AluSp SINE Alu 1 311 -2 2237 84 3 24 chr3 44662025 44662323 -182862255 + AluSq SINE Alu 1 292 -21 1014 144 0 0 chr3 44662323 44662503 -182862075 + (TA)n Simple_repeat Simple_repeat 1 180 0 273 302 12 0 chr3 44662648 44662734 -182861844 + MLT1K LTR MaLR 12 98 -490 243 352 106 7 chr3 44663520 44663662 -182860916 - L2 LINE L2 0 3272 3117 2261 119 0 0 chr3 44663692 44663987 -182860591 + AluSx SINE Alu 1 295 -17 2342 97 3 3 chr3 44664073 44664384 -182860194 - AluSp SINE Alu -2 311 1 475 288 14 20 chr3 44664682 44664828 -182859750 - MIR3 SINE MIR -62 146 2 2219 94 35 0 chr3 44665318 44665605 -182858973 - AluSq SINE Alu -16 297 1 240 257 29 0 chr3 44665719 44665789 -182858789 - L2 LINE L2 -1 3312 3241 2538 61 3 13 chr3 44665800 44666112 -182858466 + AluY SINE Alu 1 309 -2 1314 161 28 14 chr3 44666759 44666976 -182857602 - AluJo SINE Alu -55 257 38 180 295 74 32 chr3 44667385 44667480 -182857098 - MIR SINE MIR -6 256 158 2218 110 3 3 chr3 44668481 44668781 -182855797 + AluSx SINE Alu 1 300 -12 606 235 163 27 chr3 44668915 44669136 -182855442 + MIR SINE MIR 2 252 -10 267 287 15 73 chr3 44669431 44669567 -182855011 - HAL1 LINE L1 0 2507 2380 917 150 12 40 chr3 44669585 44669758 -182854820 + MLT1D LTR MaLR 338 505 0 342 271 119 57 chr3 44669758 44669874 -182854704 + L1ME LINE L1 5596 5703 -418 2171 134 7 0 chr3 44669874 44670181 -182854397 + AluSx SINE Alu 1 309 -3 342 271 119 57 chr3 44670181 44670274 -182854304 + L1ME LINE L1 5703 5818 -303 1278 219 116 41 chr3 44670387 44670872 -182853706 - L1MC5 LINE L1 -198 7763 7243 715 90 0 20 chr3 44671297 44671397 -182853181 - AluSg/x SINE Alu 0 312 215 2023 138 0 14 chr3 44671397 44671686 -182852892 - AluSx SINE Alu -27 285 1 905 153 0 7 chr3 44671687 44671824 -182852754 - AluJb SINE Alu -176 136 1 779 207 67 5 chr3 44671850 44672043 -182852535 + L2 LINE L2 2003 2207 -1107 1605 193 37 3 chr3 44672088 44672383 -182852195 + AluJo SINE Alu 1 305 -7 7860 26 7 3 chr3 44672394 44673276 -182851302 + L1PA4 LINE L1 5271 6155 0 4299 144 68 7 chr3 44673276 44674026 -182850552 - L1MB3 LINE L1 -8 6175 5380 2513 63 10 0 chr3 44674037 44674339 -182850239 - AluSp SINE Alu -4 309 5 1683 272 158 8 chr3 44674344 44675303 -182849275 + L2 LINE L2 2196 3302 -11 2386 93 3 10 chr3 44676011 44676322 -182848256 + AluSp SINE Alu 1 309 -4 2144 124 0 0 chr3 44676466 44676765 -182847813 + AluSx SINE Alu 1 299 -13 1097 67 0 15 chr3 44676888 44677022 -182847556 + AluY SINE Alu 1 132 -179 2175 110 3 10 chr3 44677024 44677333 -182847245 + AluSx SINE Alu 2 308 -4 471 246 97 40 chr3 44682307 44682482 -182842096 + MER20B DNA MER1_type 1 185 -598 246 62 0 0 chr3 44683127 44683159 -182841419 + (A)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr3 44683210 44683232 -182841346 + AT_rich Low_complexity Low_complexity 1 22 0 336 272 172 26 chr3 44683577 44683809 -182840769 + L2 LINE L2 2174 2439 -875 346 278 148 31 chr3 44683809 44683971 -182840607 + L2 LINE L2 2554 2734 -580 650 287 119 77 chr3 44684008 44684269 -182840309 + L2 LINE L2 3001 3272 0 37 0 0 0 chr3 44684673 44684710 -182839868 + AT_rich Low_complexity Low_complexity 1 37 0 1669 207 0 3 chr3 44685330 44685634 -182838944 - AluSx SINE Alu -8 304 2 987 245 20 0 chr3 44686199 44686403 -182838175 + MER58A DNA MER1_type 11 218 -6 476 298 38 2 chr3 44686407 44686645 -182837933 - MLT1I LTR MaLR -125 284 3 1731 220 127 17 chr3 44686687 44687151 -182837427 - L1ME3 LINE L1 -7 6155 5641 418 260 45 132 chr3 44687151 44687227 -182837351 + L2 LINE L2 2641 2722 -592 2252 105 3 0 chr3 44687227 44687521 -182837057 + AluSx SINE Alu 1 295 -17 418 260 45 132 chr3 44687521 44687732 -182836846 + L2 LINE L2 2722 2903 -411 2023 111 42 3 chr3 44688002 44688291 -182836287 - AluSx SINE Alu -12 300 1 363 174 122 10 chr3 44688503 44688601 -182835977 - L1MA10 LINE L1 -1 6333 6225 670 157 50 43 chr3 44688605 44688745 -182835833 - MLT1A1 LTR MaLR -224 141 1 365 263 40 0 chr3 44689142 44689241 -182835337 - L2 LINE L2 -6 3307 3205 793 175 0 8 chr3 44689993 44690113 -182834465 + FLAM_A SINE Alu 1 119 -14 5527 159 63 29 chr3 44690122 44690182 -182834396 + L1MA4 LINE L1 4132 4189 -2111 2159 119 0 0 chr3 44690182 44690477 -182834101 + AluSx SINE Alu 3 297 -15 5527 159 63 29 chr3 44690477 44690824 -182833754 + L1MA4 LINE L1 4189 4523 -1777 1312 171 75 86 chr3 44690824 44691116 -182833462 + AluJb SINE Alu 2 290 -12 5527 159 63 29 chr3 44691116 44691572 -182833006 + L1MA4 LINE L1 4523 4962 -1338 2083 115 3 3 chr3 44691572 44691868 -182832710 + AluSg SINE Alu 1 296 -14 5527 159 63 29 chr3 44691868 44692616 -182831962 + L1MA4 LINE L1 4962 5827 -473 2421 58 0 61 chr3 44692616 44692943 -182831635 + AluY SINE Alu 1 307 -4 5527 159 63 29 chr3 44692943 44693430 -182831148 + L1MA4 LINE L1 5827 6296 -4 2587 51 0 0 chr3 44693430 44693726 -182830852 - AluY SINE Alu -15 296 1 1815 130 12 50 chr3 44693771 44694094 -182830484 - AluJb SINE Alu -1 311 1 22 0 0 0 chr3 44694338 44694360 -182830218 + AT_rich Low_complexity Low_complexity 1 22 0 198 103 0 0 chr3 44694360 44694389 -182830189 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 1619 150 53 0 chr3 44694389 44694655 -182829923 - AluJo SINE Alu -32 280 1 2467 66 0 10 chr3 44695935 44696237 -182828341 + AluSx SINE Alu 1 299 -13 853 246 78 64 chr3 44696317 44696877 -182827701 - L1MC5 LINE L1 -240 7721 7261 388 287 23 18 chr3 44696895 44697071 -182827507 - L1MC4 LINE L1 -737 7224 7072 243 295 13 13 chr3 44697117 44697195 -182827383 + L2 LINE L2 3225 3302 -11 644 174 132 0 chr3 44697195 44697316 -182827262 + FLAM_C SINE Alu 2 138 -5 1774 184 3 0 chr3 44697318 44697612 -182826966 + AluJo SINE Alu 1 295 -17 1020 137 87 19 chr3 44697819 44697980 -182826598 - FAM SINE Alu -1 174 3 601 143 0 0 chr3 44697982 44698066 -182826512 + Tigger5 DNA MER2_type 2240 2323 0 1253 209 8 16 chr3 44698066 44698324 -182826254 - MER74A LTR ERVL -302 256 1 2673 160 91 17 chr3 44699083 44699613 -182824965 + L1MB3 LINE L1 5450 6018 -165 239 209 0 0 chr3 44699685 44699728 -182824850 + L1MB3 LINE L1 6001 6043 -140 1711 164 3 31 chr3 44699733 44699904 -182824674 - AluJo SINE Alu 0 305 131 255 61 0 0 chr3 44699904 44699937 -182824641 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 2428 61 3 3 chr3 44699938 44700235 -182824343 - AluY SINE Alu -14 297 1 2123 122 0 3 chr3 44700236 44700531 -182824047 - AluSx SINE Alu -18 294 1 1711 164 3 31 chr3 44700531 44700666 -182823912 - AluJo SINE Alu -173 132 3 955 146 0 7 chr3 44700668 44700819 -182823759 + L1MB3 LINE L1 6027 6176 -7 2107 183 42 80 chr3 44700848 44701315 -182823263 + L1ME2 LINE L1 5592 6191 -143 1996 111 62 0 chr3 44701315 44701604 -182822974 - AluY SINE Alu -4 307 1 2107 183 42 80 chr3 44701604 44701743 -182822835 + L1ME2 LINE L1 6191 6334 0 230 250 75 50 chr3 44702259 44702379 -182822199 - HAL1 LINE L1 -29 2478 2356 223 208 0 26 chr3 44702405 44702482 -182822096 + CT-rich Low_complexity Low_complexity 3 77 0 1445 168 0 4 chr3 44702520 44702752 -182821826 - AluJb SINE Alu -81 231 1 241 219 55 14 chr3 44702795 44702868 -182821710 - HAL1 LINE L1 -186 2321 2246 285 232 18 62 chr3 44703034 44703146 -182821432 - HAL1b LINE L1 -500 848 742 22 35 0 0 chr3 44703171 44703200 -182821378 + AT_rich Low_complexity Low_complexity 1 29 0 2214 117 7 3 chr3 44703283 44703592 -182820986 + AluSx SINE Alu 1 310 -2 1509 46 6 0 chr3 44703942 44704115 -182820463 + L1PA5 LINE L1 5972 6145 -9 23 0 0 0 chr3 44704116 44704139 -182820439 + AT_rich Low_complexity Low_complexity 1 23 0 472 323 137 6 chr3 44704141 44704469 -182820109 - HAL1 LINE L1 -601 1906 1536 2282 92 7 3 chr3 44704721 44705015 -182819563 + AluSc SINE Alu 1 295 -14 1186 216 11 28 chr3 44705087 44705380 -182819198 - L1ME3A LINE L1 -205 5965 5678 2250 91 0 7 chr3 44705400 44705696 -182818882 - AluSg SINE Alu -16 294 1 566 280 80 14 chr3 44705706 44705981 -182818597 - L1M4 LINE L1 -3558 2588 2296 276 120 0 0 chr3 44705966 44706016 -182818562 - L1MB4 LINE L1 0 6180 6131 * 708 218 0 58 chr3 44706016 44706084 -182818494 - FRAM SINE Alu -148 164 94 3426 140 30 82 chr3 44706084 44706813 -182817765 + LTR8 LTR ERV1 1 691 0 708 218 0 58 chr3 44706813 44706918 -182817660 - FRAM SINE Alu -218 94 1 1717 189 65 8 chr3 44706919 44707316 -182817262 - L1MB4 LINE L1 -38 6142 5723 4637 168 30 16 chr3 44707318 44708143 -182816435 + L1MB5 LINE L1 5122 5962 -212 2225 108 7 0 chr3 44708143 44708440 -182816138 + AluSx SINE Alu 1 299 -13 4637 168 30 16 chr3 44708440 44708619 -182815959 + L1MB5 LINE L1 5962 6137 -37 2228 95 3 3 chr3 44708620 44708947 -182815631 + AluSx SINE Alu 1 327 0 1776 140 59 0 chr3 44708964 44709235 -182815343 + AluSx SINE Alu 1 287 -25 180 0 0 0 chr3 44709241 44709261 -182815317 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 1973 150 3 7 chr3 44709266 44709573 -182815005 + AluSx SINE Alu 1 306 -6 250 31 0 0 chr3 44709573 44709605 -182814973 + L1MB5 LINE L1 6132 6163 -11 2182 89 3 11 chr3 44709615 44709935 -182814643 - AluSg SINE Alu 0 318 1 25 0 0 0 chr3 44709935 44709960 -182814618 + AT_rich Low_complexity Low_complexity 1 25 0 2040 140 0 16 chr3 44709964 44710101 -182814477 + AluSx SINE Alu 1 139 -173 2277 108 3 0 chr3 44710101 44710402 -182814176 + AluSp SINE Alu 1 303 -6 258 32 0 0 chr3 44710402 44710433 -182814145 + (TA)n Simple_repeat Simple_repeat 1 31 0 2040 140 0 16 chr3 44710437 44710606 -182813972 + AluSx SINE Alu 139 302 -10 1544 164 37 129 chr3 44710619 44710690 -182813888 - MLT1A1 LTR MaLR 0 365 289 2096 127 3 0 chr3 44710690 44710973 -182813605 + AluSx SINE Alu 1 284 -28 1544 164 37 129 chr3 44710973 44711303 -182813275 - MLT1A1 LTR MaLR -76 289 1 1875 172 3 0 chr3 44711370 44711673 -182812905 - AluJb SINE Alu -6 306 3 1357 90 11 0 chr3 44711713 44711902 -182812676 - AluSq SINE Alu -2 311 121 340 301 59 20 chr3 44711943 44712096 -182812482 - HAL1 LINE L1 -1597 910 752 269 313 52 43 chr3 44712207 44712322 -182812256 + MLT1L LTR MaLR 493 608 -7 2013 120 25 0 chr3 44712475 44712749 -182811829 - AluSx SINE Alu -31 281 1 21 0 0 0 chr3 44713468 44713489 -182811089 + AT_rich Low_complexity Low_complexity 1 21 0 239 266 195 9 chr3 44713778 44713891 -182810687 - L2 LINE L2 0 3313 3180 599 253 103 62 chr3 44714269 44714561 -182810017 + MER102b DNA MER1_type 38 341 0 1254 57 0 0 chr3 44714607 44714765 -182809813 - L1PA5 LINE L1 0 6154 5997 252 258 0 0 chr3 44715031 44715093 -182809485 - Zaphod DNA AcHobo -1 4030 3969 * 1243 315 52 31 chr3 44715076 44715501 -182809077 - MER115 DNA AcHobo -229 464 31 2385 173 42 9 chr3 44715554 44716004 -182808574 - MLT1C LTR MaLR 0 467 3 1214 167 38 5 chr3 44716143 44716353 -182808225 - AluSg/x SINE Alu -11 301 85 1125 196 4 31 chr3 44716832 44717057 -182807521 - MER20 DNA MER1_type 0 219 1 252 0 0 0 chr3 44717279 44717307 -182807271 + (TG)n Simple_repeat Simple_repeat 2 29 0 264 59 0 0 chr3 44717602 44717636 -182806942 + (TTG)n Simple_repeat Simple_repeat 3 36 0 183 349 35 0 chr3 44717814 44717900 -182806678 + MIR SINE MIR 95 183 -79 989 105 78 0 chr3 44718170 44718323 -182806255 - AluSg/x SINE Alu -14 298 134 2312 95 3 22 chr3 44718323 44718638 -182805940 - AluSp SINE Alu -4 309 1 567 199 178 0 chr3 44719509 44719655 -182804923 + HAL1 LINE L1 16 187 -2320 1030 124 0 0 chr3 44719655 44719792 -182804786 + AluSq/x SINE Alu 1 137 -175 236 248 34 78 chr3 44719797 44719810 -182804768 - L1MC5 LINE L1 -393 7415 7403 1942 190 41 62 chr3 44719810 44719889 -182804689 - Charlie4a DNA MER1_type -1454 507 428 2187 98 0 3 chr3 44719889 44720207 -182804371 - AluSq SINE Alu 0 317 1 1942 190 41 62 chr3 44720207 44720643 -182803935 - Charlie4a DNA MER1_type -1533 428 2 236 248 34 78 chr3 44720643 44720774 -182803804 - L1MC5 LINE L1 -405 7403 7246 715 173 113 56 chr3 44720880 44721146 -182803432 + L1MC5 LINE L1 6884 7164 -797 2000 135 0 38 chr3 44721152 44721470 -182803108 - AluJb SINE Alu -6 306 1 874 274 75 58 chr3 44721472 44722335 -182802243 - L1MC4 LINE L1 -891 6917 6047 751 236 76 25 chr3 44722338 44722614 -182801964 - L1MC4a LINE L1 -1789 6019 5730 * 1529 211 63 85 chr3 44722608 44722947 -182801631 + HAL1 LINE L1 813 1131 -1376 2500 68 0 6 chr3 44722947 44723258 -182801320 + AluY SINE Alu 1 309 -2 1529 211 63 85 chr3 44723258 44723599 -182800979 + HAL1 LINE L1 1131 1478 -1029 657 140 0 0 chr3 44723612 44723705 -182800873 + AluSg/x SINE Alu 195 287 -22 746 168 81 65 chr3 44723723 44723805 -182800773 + HAL1 LINE L1 1491 1570 -937 2235 120 0 0 chr3 44723805 44724104 -182800474 - AluSx SINE Alu -11 301 3 746 168 81 65 chr3 44724104 44724206 -182800372 + HAL1 LINE L1 1570 1678 -829 500 247 121 6 chr3 44724235 44724370 -182800208 + HAL1 LINE L1 2305 2468 -39 2253 114 3 13 chr3 44724370 44724685 -182799893 - AluSx SINE Alu 0 312 1 500 247 121 6 chr3 44724685 44724731 -182799847 + HAL1 LINE L1 2468 2507 0 194 62 31 0 chr3 44724992 44725024 -182799554 + (CAA)n Simple_repeat Simple_repeat 1 33 0 202 83 0 62 chr3 44725112 44725160 -182799418 + (CAAAC)n Simple_repeat Simple_repeat 5 49 0 193 176 216 0 chr3 44725329 44725380 -182799198 + MER5B DNA MER1_type 1 62 -116 1361 155 0 10 chr3 44725381 44725588 -182798990 + AluSq SINE Alu 1 205 -108 198 0 0 0 chr3 44725607 44725629 -182798949 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 1067 68 8 0 chr3 44725705 44725837 -182798741 - AluSp SINE Alu -180 133 1 189 293 35 0 chr3 44725840 44725898 -182798680 + MER5A DNA MER1_type 130 189 0 194 138 69 0 chr3 44728769 44728827 -182795751 + (TA)n Simple_repeat Simple_repeat 1 62 0 358 228 33 11 chr3 44728832 44728924 -182795654 + MER112 DNA MER1_type 67 160 -100 1848 117 3 38 chr3 44728943 44729234 -182795344 - AluSx SINE Alu -31 281 1 222 37 0 0 chr3 44729624 44729651 -182794927 + (T)n Simple_repeat Simple_repeat 1 27 0 459 180 57 49 chr3 44729770 44729892 -182794686 - MIR SINE MIR -64 144 22 2365 76 0 10 chr3 44731617 44731918 -182792660 - AluY SINE Alu -13 298 1 1105 59 15 0 chr3 44732027 44732192 -182792386 + AluY SINE Alu 144 310 0 1614 178 19 11 chr3 44732251 44732520 -182792058 - AluJo SINE Alu -20 292 22 2005 159 31 11 chr3 44732581 44732939 -182791639 - MLT1A1 LTR MaLR 0 365 1 1463 160 4 0 chr3 44732950 44733188 -182791390 - AluSq SINE Alu -15 298 60 25 31 0 0 chr3 44734424 44734456 -182790122 + AT_rich Low_complexity Low_complexity 1 32 0 1739 169 0 26 chr3 44734589 44734896 -182789682 - AluJb SINE Alu -13 299 1 404 103 29 0 chr3 44735261 44735329 -182789249 - L1PA12 LINE L1 -2 6166 6097 1875 112 60 21 chr3 44735336 44735621 -182788957 - AluSg SINE Alu -14 296 1 1864 160 7 10 chr3 44735734 44736034 -182788544 - AluJb SINE Alu -13 299 1 329 203 0 0 chr3 44736288 44736352 -182788226 - L1MB1 LINE L1 -96 6093 6030 409 141 0 0 chr3 44736369 44736440 -182788138 - Alu SINE Alu 0 310 240 2128 107 0 0 chr3 44736440 44736712 -182787866 - AluSg SINE Alu -38 272 1 231 36 0 0 chr3 44736904 44736932 -182787646 + (TGG)n Simple_repeat Simple_repeat 1 28 0 257 253 24 12 chr3 44737882 44737965 -182786613 + L1MC4a LINE L1 7192 7275 -533 1469 232 3 7 chr3 44738288 44738598 -182785980 - AluJb SINE Alu -3 309 1 1758 174 7 17 chr3 44738785 44739084 -182785494 - AluSq SINE Alu -17 296 1 238 337 18 78 chr3 44739492 44739576 -182785002 - L2 LINE L2 -8 3264 3193 559 111 0 22 chr3 44739576 44739666 -182784912 + L1PA11 LINE L1 6087 6174 0 238 337 18 78 chr3 44739666 44739747 -182784831 - L2 LINE L2 -79 3193 3109 1675 120 0 4 chr3 44740100 44740341 -182784237 - AluSg/x SINE Alu -4 306 67 206 170 0 21 chr3 44740571 44740618 -182783960 + (TTAA)n Simple_repeat Simple_repeat 3 48 0 1667 137 23 4 chr3 44740626 44740882 -182783696 - AluSc SINE Alu -48 261 1 259 56 56 111 chr3 44740910 44741018 -182783560 + (TTATA)n Simple_repeat Simple_repeat 3 104 0 227 197 128 68 chr3 44741020 44741137 -182783441 + L1ME LINE L1 5609 5732 -389 288 194 0 16 chr3 44741166 44741228 -182783350 + L1M4 LINE L1 4562 4622 -1524 2274 97 0 7 chr3 44741254 44741543 -182783035 - AluSx SINE Alu -25 287 1 801 220 13 13 chr3 44741832 44741991 -182782587 - FRAM SINE Alu -12 164 6 237 33 0 0 chr3 44741996 44742026 -182782552 + (CAAA)n Simple_repeat Simple_repeat 1 30 0 512 145 0 0 chr3 44742048 44742124 -182782454 + FRAM/FAM SINE Alu 1 75 -101 296 235 230 40 chr3 44742129 44742329 -182782249 - L1M4 LINE L1 -1162 4984 4747 1088 110 0 0 chr3 44742430 44742576 -182782002 + AluSp/q SINE Alu 164 309 -4 266 310 0 0 chr3 44742660 44742747 -182781831 - MER117 DNA MER1_type -32 165 79 385 179 0 0 chr3 44742916 44742983 -182781595 - FLAM SINE Alu -10 123 57 1942 162 36 0 chr3 44742990 44743348 -182781230 - L1MB5 LINE L1 0 6174 5804 243 304 185 16 chr3 44743457 44743641 -182780937 + MIR SINE MIR 46 260 -2 243 222 25 0 chr3 44743963 44744044 -182780534 + L1MC4 LINE L1 6637 6719 -1323 358 142 5 68 chr3 44744056 44744246 -182780332 + (TA)n Simple_repeat Simple_repeat 1 178 0 1978 138 0 0 chr3 44744296 44744565 -182780013 - AluSx SINE Alu -43 269 1 1796 228 59 2 chr3 44744700 44745188 -182779390 - L1M4 LINE L1 -2265 3881 3366 545 286 57 14 chr3 44745188 44745398 -182779180 + MER57B LTR ERV1 4 222 -212 463 223 27 7 chr3 44745422 44745570 -182779008 - L1M4 LINE L1 -2812 3334 3187 1483 82 10 0 chr3 44745993 44746188 -182778390 + MER30 DNA MER1_type 1 197 -33 2162 102 0 51 chr3 44746278 44746593 -182777985 + AluSq SINE Alu 2 300 -13 1868 166 0 10 chr3 44746822 44747124 -182777454 + AluJo SINE Alu 1 299 -13 579 201 113 62 chr3 44747389 44747583 -182776995 - MER105 DNA DNA 0 204 1 2099 105 25 35 chr3 44748160 44748475 -182776103 + AluSx SINE Alu 1 312 0 705 174 0 84 chr3 44748558 44748713 -182775865 + FLAM_C SINE Alu 2 143 0 725 153 174 21 chr3 44748762 44748906 -182775672 + Tigger3(Golem) DNA MER2_type 6 171 -2858 1861 131 38 16 chr3 44748911 44749221 -182775357 + Tigger3(Golem) DNA MER2_type 2629 2945 -84 1456 77 0 15 chr3 44749221 44749417 -182775161 - MER107 DNA MER1_type -3 194 2 409 176 35 59 chr3 44749417 44749500 -182775078 + Tigger3(Golem) DNA MER2_type 2958 3038 0 1085 158 77 5 chr3 44750654 44750850 -182773728 - AluJo SINE Alu -21 291 82 851 215 86 39 chr3 44750853 44751054 -182773524 - L1MD2 LINE L1 -16 6343 6126 279 0 0 0 chr3 44751054 44751085 -182773493 + (TG)n Simple_repeat Simple_repeat 2 32 0 851 215 86 39 chr3 44751085 44751139 -182773439 - L1MD2 LINE L1 -233 6126 6076 3393 164 6 2 chr3 44751644 44752169 -182772409 - MER1A DNA MER1_type 0 527 1 443 162 35 234 chr3 44752374 44752661 -182771917 - L1MC5 LINE L1 -32 7929 7587 3600 117 29 2 chr3 44752661 44753173 -182771405 + MER1A DNA MER1_type 1 526 -1 443 162 35 234 chr3 44753173 44753191 -182771387 - L1MC5 LINE L1 -374 7587 7716 1663 181 50 0 chr3 44753191 44753468 -182771110 + AluJb SINE Alu 1 291 -21 443 162 35 234 chr3 44753468 44753555 -182771023 - L1MC5 LINE L1 -244 7717 7614 1876 153 10 17 chr3 44754738 44755039 -182769539 + AluSx SINE Alu 1 299 -13 2038 151 3 7 chr3 44755332 44755631 -182768947 + AluSx SINE Alu 1 298 -14 2567 67 0 13 chr3 44755854 44756168 -182768410 + AluSg SINE Alu 1 310 0 2270 110 0 10 chr3 44759117 44759425 -182765153 - AluSq SINE Alu -8 305 1 221 250 83 0 chr3 44759637 44759709 -182764869 - MIR SINE MIR -13 249 172 1097 173 0 0 chr3 44759727 44759900 -182764678 - FRAM SINE Alu -4 172 1 2208 174 36 5 chr3 44760133 44760547 -182764031 + Tigger4(Zombi) DNA MER2_type 2 428 -2303 2017 141 0 10 chr3 44760547 44760852 -182763726 + AluSx SINE Alu 1 302 -10 4059 107 14 20 chr3 44760852 44761506 -182763072 + Tigger4(Zombi) DNA MER2_type 2077 2726 -5 251 222 81 20 chr3 44761672 44761771 -182762807 - L1MD2 LINE L1 -2024 5784 5680 233 299 103 11 chr3 44762462 44762549 -182762029 - L2 LINE L2 -35 3237 3143 * 340 279 84 58 chr3 44762548 44762702 -182761876 - MIR SINE MIR -77 185 28 673 160 0 34 chr3 44813391 44813510 -182711068 + FLAM_C SINE Alu 17 131 -12 21 0 0 0 chr3 44813513 44813534 -182711044 + AT_rich Low_complexity Low_complexity 1 21 0 2255 92 20 10 chr3 44813623 44813928 -182710650 - AluSx SINE Alu -4 308 1 2043 78 23 0 chr3 44814142 44814398 -182710180 + AluSc SINE Alu 32 293 -16 739 188 19 19 chr3 44814567 44814721 -182709857 - AluJb SINE Alu -6 306 153 688 206 8 0 chr3 44815336 44815467 -182709111 - AluJb SINE Alu -179 133 2 552 258 86 66 chr3 44815468 44815691 -182708887 - L1ME LINE L1 -350 5820 5586 1931 143 0 14 chr3 44815691 44815985 -182708593 - AluSx SINE Alu -22 290 1 552 258 86 66 chr3 44815985 44816110 -182708468 - L1ME LINE L1 -584 5586 5465 227 218 172 11 chr3 44816303 44816390 -182708188 + MIR SINE MIR 47 147 -115 896 249 15 0 chr3 44816555 44816760 -182707818 - MIR SINE MIR -41 221 14 225 276 41 20 chr3 44816864 44816962 -182707616 + L1MC4a LINE L1 7708 7807 -1 1855 145 0 37 chr3 44818901 44819197 -182705381 - AluSx SINE Alu -27 285 1 245 330 21 0 chr3 44819280 44819377 -182705201 - MIR SINE MIR -14 248 150 2121 111 21 0 chr3 44819459 44819748 -182704830 - AluSq SINE Alu -18 295 1 222 333 8 61 chr3 44820227 44820359 -182704219 + L2 LINE L2 2930 3054 -218 288 268 89 16 chr3 44822747 44822832 -182701746 - MER5A DNA MER1_type -44 145 47 894 138 6 31 chr3 44822832 44822991 -182701587 - L1PA15 LINE L1 0 6165 6011 288 268 89 16 chr3 44822991 44823028 -182701550 - MER5A DNA MER1_type -142 47 14 2755 135 20 0 chr3 44823068 44823475 -182701103 + MER57B LTR ERV1 5 419 -15 981 131 0 0 chr3 44823632 44823769 -182700809 + AluJo SINE Alu 1 137 -175 38 22 0 0 chr3 44823790 44823835 -182700743 + AT_rich Low_complexity Low_complexity 1 45 0 726 231 17 34 chr3 44824507 44824741 -182699837 + AluSq SINE Alu 2 231 -82 987 108 23 0 chr3 44826137 44826267 -182698311 - AluSq/x SINE Alu -180 133 1 259 274 45 76 chr3 44826422 44826579 -182697999 - MLT1K LTR MaLR -435 153 2 355 313 89 18 chr3 44826737 44826961 -182697617 - MIR SINE MIR -12 250 11 960 204 47 9 chr3 44826968 44827179 -182697399 + MER20 DNA MER1_type 1 219 0 250 276 160 22 chr3 44827217 44827398 -182697180 + L2 LINE L2 3095 3300 -13 186 43 0 0 chr3 44827399 44827422 -182697156 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 397 235 10 10 chr3 44827822 44827920 -182696658 + MIR SINE MIR 165 262 0 182 62 31 0 chr3 44828340 44828372 -182696206 + (TTTTG)n Simple_repeat Simple_repeat 5 37 0 1940 146 7 0 chr3 44828727 44829014 -182695564 - AluJb SINE Alu -23 289 1 505 165 61 17 chr3 44829020 44829135 -182695443 - MIR SINE MIR -69 193 74 640 240 82 14 chr3 44829164 44829372 -182695206 + MER113 DNA MER1_type? 79 300 -221 402 74 0 0 chr3 44829372 44829426 -182695152 + (TC)n Simple_repeat Simple_repeat 2 55 0 704 147 9 0 chr3 44829437 44829553 -182695025 + MER41B LTR ERV1 1 117 -518 271 274 189 0 chr3 44829828 44829934 -182694644 - MER5B DNA MER1_type -52 126 1 310 240 240 6 chr3 44829942 44830113 -182694465 - MER5C DNA MER1_type 0 324 114 264 244 0 90 chr3 44830126 44830204 -182694374 + AluJo SINE Alu 87 157 -145 684 186 0 0 chr3 44830247 44830360 -182694218 - FLAM_A SINE Alu -7 135 23 307 233 23 39 chr3 44830361 44830490 -182694088 - MER5C DNA MER1_type -196 128 2 274 282 161 0 chr3 44831001 44831125 -182693453 - MIR SINE MIR -8 254 111 840 250 81 110 chr3 44831126 44831402 -182693176 + HAL1 LINE L1 1828 2111 -396 987 199 0 0 chr3 44831402 44831563 -182693015 + FAM SINE Alu 1 161 -14 840 250 81 110 chr3 44831563 44831969 -182692609 + HAL1 LINE L1 2111 2490 -17 2573 63 0 0 chr3 44831972 44832271 -182692307 - AluY SINE Alu -12 299 1 21 36 0 0 chr3 44832276 44832304 -182692274 + AT_rich Low_complexity Low_complexity 1 28 0 204 271 0 0 chr3 44832978 44833037 -182691541 + MIR SINE MIR 49 107 -155 819 284 26 0 chr3 44833146 44833378 -182691200 + LTR16A LTR ERVL 105 342 -108 525 225 5 139 chr3 44834184 44834371 -182690207 + MIR SINE MIR 82 243 -19 2119 122 0 3 chr3 44834428 44834715 -182689863 + AluSx SINE Alu 1 286 -26 342 0 0 0 chr3 44834930 44834968 -182689610 + (TG)n Simple_repeat Simple_repeat 1 38 0 1545 168 0 64 chr3 44834968 44835265 -182689313 - AluJb SINE Alu -33 279 2 434 230 46 63 chr3 44835981 44836155 -182688423 - MIR SINE MIR 0 262 92 1156 159 0 0 chr3 44836282 44836458 -182688120 - FRAM SINE Alu -8 168 1 476 219 35 123 chr3 44837572 44837800 -182686778 + MLT1G LTR MaLR 383 590 0 2289 114 0 0 chr3 44838017 44838316 -182686262 - AluSx SINE Alu -13 299 1 279 131 49 33 chr3 44838769 44838830 -182685748 + LTR67 LTR ERVL 492 553 -4 1689 186 0 3 chr3 44839413 44839709 -182684869 - AluJo SINE Alu -17 295 1 1481 119 140 0 chr3 44839878 44840113 -182684465 + AluJb SINE Alu 12 279 -33 339 25 0 0 chr3 44840114 44840154 -182684424 + (CA)n Simple_repeat Simple_repeat 2 41 0 757 167 123 54 chr3 44840639 44840843 -182683735 + MER20 DNA MER1_type 1 218 -1 2173 109 0 16 chr3 44840910 44841213 -182683365 - AluSx SINE Alu -14 298 1 313 250 29 0 chr3 44841324 44841428 -182683150 - MER113 DNA MER1_type? -405 116 10 195 42 0 0 chr3 44841433 44841457 -182683121 + (ATG)n Simple_repeat Simple_repeat 3 26 0 2345 114 0 0 chr3 44842176 44842483 -182682095 - AluSx SINE Alu -5 307 1 221 250 0 0 chr3 44842634 44842678 -182681900 + (TG)n Simple_repeat Simple_repeat 2 45 0 434 238 108 17 chr3 44842728 44842897 -182681681 - MIR SINE MIR -62 146 7 1467 170 8 26 chr3 44842923 44843188 -182681390 + AluJb SINE Alu 9 268 -44 432 320 59 5 chr3 44843646 44843868 -182680710 - MER113 DNA MER1_type? 0 521 288 2081 97 0 4 chr3 44843871 44844150 -182680428 - MER41B LTR ERV1 0 635 358 2219 116 0 3 chr3 44844151 44844452 -182680126 - AluSq SINE Alu -13 300 1 224 276 13 53 chr3 44844627 44844703 -182679875 + L2 LINE L2 2715 2787 -527 1054 248 64 61 chr3 44844736 44845176 -182679402 - MLT1H LTR MaLR -16 533 93 1277 171 73 24 chr3 44845176 44845422 -182679156 - AluJo SINE Alu -20 292 35 225 341 11 0 chr3 44845674 44845765 -182678813 + MIR SINE MIR 164 255 -7 22 0 0 0 chr3 44846131 44846153 -182678425 + AT_rich Low_complexity Low_complexity 1 22 0 2353 84 0 13 chr3 44846325 44846633 -182677945 + AluY SINE Alu 1 304 -7 507 223 109 50 chr3 44847617 44847837 -182676741 + MIR SINE MIR 30 262 0 366 279 10 10 chr3 44847841 44847945 -182676633 - MIR SINE MIR -99 163 60 1878 134 69 0 chr3 44848078 44848354 -182676224 + AluJb SINE Alu 5 299 -13 346 231 0 48 chr3 44849327 44849431 -182675147 - MER113 DNA MER1_type? -44 477 379 1055 170 0 0 chr3 44849447 44849606 -182674972 + FRAM SINE Alu 1 158 -18 2278 108 3 16 chr3 44849614 44849930 -182674648 + AluSx SINE Alu 1 312 0 247 240 107 0 chr3 44849933 44850008 -182674570 - MER113 DNA MER1_type? -437 84 2 2218 127 0 3 chr3 44850343 44850651 -182673927 + AluSq SINE Alu 1 307 -6 227 362 11 0 chr3 44850769 44850863 -182673715 + MIR SINE MIR 162 256 -6 281 295 21 42 chr3 44851216 44851311 -182673267 - MER5A DNA MER1_type -88 101 9 1258 177 4 38 chr3 44851460 44851726 -182672852 - AluJo SINE Alu -35 277 21 199 204 0 56 chr3 44852186 44852240 -182672338 - L3b LINE CR1 -14 1569 1519 2082 124 0 38 chr3 44852457 44852771 -182671807 + AluSx SINE Alu 1 302 -10 346 304 75 28 chr3 44852827 44853080 -182671498 + L2 LINE L2 2872 3136 -177 771 230 108 10 chr3 44853171 44853375 -182671203 - MIR SINE MIR -16 246 23 214 227 45 30 chr3 44853401 44853467 -182671111 + L2 LINE L2 3205 3271 -42 2420 96 0 10 chr3 44853647 44853960 -182670618 - AluSx SINE Alu -2 310 1 2083 130 0 10 chr3 44854257 44854557 -182670021 - AluSx SINE Alu -15 297 1 346 237 10 41 chr3 44854609 44854706 -182669872 - MIR SINE MIR -136 126 33 369 58 0 0 chr3 44858228 44858280 -182666298 + (CA)n Simple_repeat Simple_repeat 2 53 0 205 213 173 40 chr3 44860210 44860285 -182664293 - MIR SINE MIR -122 140 56 1121 133 104 82 chr3 44860708 44860735 -182663843 - MER33 DNA MER1_type -2261 324 299 2209 87 0 26 chr3 44860735 44861045 -182663533 + AluSx SINE Alu 1 302 -10 1121 133 104 82 chr3 44861045 44861334 -182663244 - MER33 DNA MER1_type -2286 299 1 308 333 45 50 chr3 44861956 44862157 -182662421 + L2 LINE L2 2564 2763 -551 901 174 0 0 chr3 44862368 44862517 -182662061 + AluJb SINE Alu 156 304 -8 24 0 0 0 chr3 44862517 44862541 -182662037 + AT_rich Low_complexity Low_complexity 1 24 0 431 269 109 78 chr3 44862541 44862835 -182661743 - L1MC4a LINE L1 -1634 6174 5872 244 379 121 0 chr3 44862943 44863059 -182661519 + L2 LINE L2 3124 3253 -19 221 83 28 0 chr3 44864997 44865033 -182659545 + (TTTTC)n Simple_repeat Simple_repeat 2 38 0 436 333 83 6 chr3 44865238 44865406 -182659172 - MIR SINE MIR -58 204 24 1992 77 11 33 chr3 44866468 44866742 -182657836 + AluSp SINE Alu 1 268 -45 417 123 0 0 chr3 44866750 44866815 -182657763 + (GA)n Simple_repeat Simple_repeat 2 66 0 1814 127 3 76 chr3 44867165 44867479 -182657099 - AluSx SINE Alu -1 311 21 231 154 45 136 chr3 44868312 44868422 -182656156 + L1MC5 LINE L1 7832 7931 -30 4315 168 43 25 chr3 44868596 44868850 -182655728 - L1MB5 LINE L1 -36 6138 5890 2326 77 3 7 chr3 44868850 44869150 -182655428 - AluY SINE Alu -12 299 1 4315 168 43 25 chr3 44869150 44869936 -182654642 - L1MB5 LINE L1 -284 5890 5083 22 56 0 0 chr3 44870267 44870303 -182654275 + AT_rich Low_complexity Low_complexity 1 36 0 2166 138 77 57 chr3 44870310 44870801 -182653777 - L1MA8 LINE L1 -1 6290 5790 1686 128 16 4 chr3 44870874 44871116 -182653462 + AluSc SINE Alu 4 248 -61 363 138 103 0 chr3 44871126 44871184 -182653394 - AluS SINE Alu -244 64 1 654 122 0 0 chr3 44871629 44871719 -182652859 + 5S rRNA rRNA 1 90 -31 2048 125 3 7 chr3 44872041 44872338 -182652240 + AluSq SINE Alu 1 296 -17 270 225 108 16 chr3 44872527 44872656 -182651922 - L1ME3A LINE L1 -219 5951 5811 369 303 34 39 chr3 44872666 44872874 -182651704 - L1ME3A LINE L1 -469 5701 5495 1850 122 23 46 chr3 44872884 44873092 -182651486 - AluSx SINE Alu -15 297 97 2250 109 3 3 chr3 44873092 44873403 -182651175 - AluSp SINE Alu -2 311 1 1850 122 23 46 chr3 44873403 44873498 -182651080 - AluSx SINE Alu -215 97 1 942 204 70 125 chr3 44873511 44874070 -182650508 - L1MC5 LINE L1 -389 7572 7045 1945 139 0 0 chr3 44874109 44874383 -182650195 - AluSx SINE Alu -38 274 1 703 254 61 66 chr3 44874383 44874479 -182650099 - L1ME3A LINE L1 -1289 4857 4762 843 148 0 15 chr3 44874479 44874614 -182649964 - FLAM_C SINE Alu 0 133 1 703 254 61 66 chr3 44874614 44874911 -182649667 - L1ME3A LINE L1 -1384 4762 4466 1684 179 32 7 chr3 44874914 44875193 -182649385 + AluJb SINE Alu 1 286 -26 2101 93 0 0 chr3 44875675 44875943 -182648635 + AluSg SINE Alu 28 295 -15 697 285 83 35 chr3 44876365 44876829 -182647749 - L1ME3A LINE L1 -222 5948 5464 13811 127 44 29 chr3 44880624 44882121 -182642457 - Tigger1 DNA MER2_type 0 2418 870 2550 84 8 51 chr3 44882121 44882512 -182642066 - THE1C LTR MaLR 0 375 2 13811 127 44 29 chr3 44882512 44883396 -182641182 - Tigger1 DNA MER2_type -1548 870 1 786 204 58 23 chr3 44883534 44883706 -182640872 - AluJo SINE Alu -25 287 110 867 152 0 21 chr3 44883728 44883873 -182640705 - AluJo SINE Alu -170 142 1 190 268 0 54 chr3 44884228 44884284 -182640294 - L3 LINE CR1 -27 1550 1498 259 354 28 34 chr3 44885962 44886140 -182638438 - L3 LINE CR1 -84 1493 1317 279 302 104 10 chr3 44888867 44888963 -182635615 + MIR3 SINE MIR 75 179 -29 305 250 87 14 chr3 44890153 44890368 -182634210 - L1MC4a LINE L1 -232 5889 5664 2487 7 18 14 chr3 44892178 44892515 -182632063 - AluYa5 SINE Alu 0 338 1 25 0 0 0 chr3 44892515 44892540 -182632038 + AT_rich Low_complexity Low_complexity 1 25 0 866 170 136 39 chr3 44892547 44892753 -182631825 - AluJo SINE Alu -44 268 43 2420 86 0 0 chr3 44892758 44893059 -182631519 - AluY SINE Alu -10 301 1 760 254 89 61 chr3 44893406 44893896 -182630682 - L1MC4 LINE L1 -1 8041 7416 2403 86 0 3 chr3 44894205 44894519 -182630059 - AluSq SINE Alu 0 313 1 1566 147 47 53 chr3 44894570 44894870 -182629708 - AluJo SINE Alu -14 298 1 1292 147 20 5 chr3 44894885 44895089 -182629489 - AluJb SINE Alu -20 292 86 23 0 0 0 chr3 44895089 44895112 -182629466 + AT_rich Low_complexity Low_complexity 1 23 0 1965 136 13 10 chr3 44895243 44895545 -182629033 - AluSx SINE Alu -9 303 1 882 136 8 0 chr3 44895778 44895910 -182628668 - FLAM_C SINE Alu 0 133 1 932 199 102 10 chr3 44897500 44897696 -182626882 - MER58A DNA MER1_type -9 215 2 1778 142 18 7 chr3 44898536 44898811 -182625767 + LTR36 LTR ERV1 264 541 -70 317 277 0 0 chr3 44898871 44898954 -182625624 + LTR36-int LTR ERV1 1420 1502 -2783 1209 160 136 98 chr3 44899022 44899390 -182625188 + LTR36-int LTR ERV1 929 1310 -476 1733 139 86 7 chr3 44899409 44899901 -182624677 + LTR36-int LTR ERV1 1225 1810 -6310 435 157 0 130 chr3 44899892 44899963 -182624615 + LTR36-int LTR ERV1 3975 4029 -2569 * 1969 105 29 73 chr3 44899963 44900278 -182624300 + AluSx SINE Alu 1 301 -11 435 157 0 130 chr3 44900278 44900314 -182624264 + LTR36-int LTR ERV1 4029 4068 -2530 * 3149 153 24 92 chr3 44900303 44900452 -182624126 + LTR36-int LTR ERV1 1635 1793 -3087 2306 78 10 0 chr3 44900452 44900745 -182623833 - AluY SINE Alu -15 296 1 3149 153 24 92 chr3 44900745 44901120 -182623458 + LTR36-int LTR ERV1 1793 2101 -2779 2042 161 0 0 chr3 44901120 44901431 -182623147 - AluJb SINE Alu -1 311 1 3149 153 24 92 chr3 44901431 44901612 -182622966 + LTR36-int LTR ERV1 2101 2293 -2587 7202 155 45 20 chr3 44901615 44901710 -182622868 + LTR36-int LTR ERV1 1988 2079 -2801 7091 41 21 0 chr3 44901710 44902635 -182621943 - L1PA5 LINE L1 -4 6150 5209 7202 155 45 20 chr3 44902635 44904143 -182620435 + LTR36-int LTR ERV1 2079 3552 -1328 2249 128 56 11 chr3 44904160 44904518 -182620060 - MSTA LTR MaLR -54 374 1 9311 148 19 15 chr3 44904518 44906161 -182618417 - MSTA-int LTR MaLR 0 1651 1 1162 175 57 5 chr3 44906161 44906372 -182618206 - MSTA LTR MaLR 0 426 205 1736 176 92 8 chr3 44906378 44906735 -182617843 + LTR36-int LTR ERV1 4278 4664 -1282 510 242 8 0 chr3 44906732 44906856 -182617722 + LTR36-int LTR ERV1 5645 5769 -562 * 818 165 121 62 chr3 44906869 44907093 -182617485 + LTR36-int LTR ERV1 5914 6150 -181 423 125 42 0 chr3 44907109 44907181 -182617397 + MER49 LTR ERV1 686 760 -163 2033 134 131 13 chr3 44907269 44907642 -182616936 - MSTA LTR MaLR -11 417 1 254 250 0 15 chr3 44907785 44907853 -182616725 + LTR36-int LTR ERV1 7448 7514 -242 3558 155 40 31 chr3 44908044 44908492 -182616086 + LTR36 LTR ERV1 1 458 -153 2296 67 3 7 chr3 44908492 44908801 -182615777 + AluY SINE Alu 1 289 -22 3558 155 40 31 chr3 44908801 44908957 -182615621 + LTR36 LTR ERV1 458 611 0 1600 185 34 7 chr3 44908985 44909277 -182615301 - AluJo SINE Alu 0 312 13 317 235 98 10 chr3 44909367 44909469 -182615109 - L1ME LINE L1 -275 5846 5736 249 224 59 106 chr3 44910179 44910264 -182614314 + MLT1A1-int LTR MaLR 1109 1189 -182 5222 172 144 103 chr3 44910678 44911576 -182613002 - L1MDa LINE L1 -4823 1717 857 381 43 0 0 chr3 44911576 44911623 -182612955 + (CA)n Simple_repeat Simple_repeat 2 48 0 5222 172 144 103 chr3 44911623 44911641 -182612937 - L1MDa LINE L1 -5683 857 841 567 97 373 15 chr3 44911641 44911775 -182612803 - LTR47A LTR ERVL -270 182 1 5222 172 144 103 chr3 44911775 44912360 -182612218 - L1MDa LINE L1 -5699 841 15 669 260 78 29 chr3 44912524 44912728 -182611850 + L2 LINE L2 3100 3313 0 1016 95 0 51 chr3 44913042 44913200 -182611378 - L1PA13 LINE L1 -1 6162 6013 3370 109 31 0 chr3 44913200 44913676 -182610902 + L1PA13 LINE L1 5494 5984 -177 802 262 73 32 chr3 44913799 44913840 -182610738 + MIR SINE MIR 2 40 -222 1449 175 117 56 chr3 44913840 44914182 -182610396 + MLT1A1 LTR MaLR 1 363 -2 802 262 73 32 chr3 44914182 44914388 -182610190 + MIR SINE MIR 40 259 -3 415 334 56 82 chr3 44915654 44916151 -182608427 + L1MEd LINE L1 300 783 -5336 217 255 243 51 chr3 44916218 44916453 -182608125 - L2 LINE L2 -181 3091 2812 662 148 0 142 chr3 44916487 44916642 -182607936 - FLAM_A SINE Alu 0 133 1 234 61 30 0 chr3 44917523 44917556 -182607022 - MER117 DNA MER1_type -39 158 125 308 236 128 82 chr3 44917559 44917754 -182606824 - MLT1H LTR MaLR -1 548 345 422 206 81 37 chr3 44917888 44918024 -182606554 - MLT1H LTR MaLR -405 144 3 301 241 38 0 chr3 44918024 44918101 -182606477 - MER117 DNA MER1_type -112 85 6 337 186 43 0 chr3 44918320 44918390 -182606188 - MLT1H LTR MaLR -363 186 114 546 87 0 0 chr3 44918391 44918460 -182606118 - AluJb SINE Alu -169 143 75 333 240 102 36 chr3 44918468 44918712 -182605866 + MLT1G LTR MaLR 185 436 -106 2762 144 14 72 chr3 44918758 44919327 -182605251 - L1MB8 LINE L1 -6 6172 5637 975 105 0 0 chr3 44919335 44919468 -182605110 - L1PA13 LINE L1 -1 6162 6030 7363 141 7 2 chr3 44919468 44920432 -182604146 - L1PA13 LINE L1 -428 5733 4755 180 0 0 0 chr3 44920432 44920452 -182604126 + (TTG)n Simple_repeat Simple_repeat 2 21 0 7363 141 7 2 chr3 44920452 44921118 -182603460 - L1PA13 LINE L1 -1406 4755 4094 722 167 7 56 chr3 44921574 44921718 -182602860 + FLAM_C SINE Alu 2 138 -5 1232 140 0 11 chr3 44921753 44921939 -182602639 + AluJb SINE Alu 121 304 -8 214 293 38 47 chr3 44922308 44922414 -182602164 - MIR SINE MIR -126 136 32 484 299 86 82 chr3 44922417 44922721 -182601857 + L2 LINE L2 258 562 -2752 6559 113 35 5 chr3 44922730 44922903 -182601675 + Tigger1 DNA MER2_type 1 167 -2251 234 0 0 0 chr3 44922903 44922929 -182601649 + (TTA)n Simple_repeat Simple_repeat 3 28 0 6559 113 35 5 chr3 44922929 44923702 -182600876 + Tigger1 DNA MER2_type 167 975 -1443 7128 35 8 2 chr3 44923702 44924541 -182600037 - L1PA5 LINE L1 -4 6150 5307 10025 107 23 2 chr3 44924541 44925957 -182598621 + Tigger1 DNA MER2_type 974 2418 0 2287 278 153 26 chr3 44925983 44926526 -182598052 + L2 LINE L2 890 1363 -1951 2227 107 7 7 chr3 44926526 44926835 -182597743 - AluY SINE Alu -2 309 1 2287 278 153 26 chr3 44926835 44927562 -182597016 + L2 LINE L2 1363 2321 -993 812 216 103 27 chr3 44927563 44927780 -182596798 - MLT1B LTR MaLR -2 388 104 1799 171 0 23 chr3 44927780 44928084 -182596494 - AluJo SINE Alu -15 297 1 812 216 103 27 chr3 44928084 44928179 -182596399 - MLT1B LTR MaLR -286 104 18 1609 265 94 28 chr3 44928216 44928791 -182595787 + L2 LINE L2 2404 3041 -272 2207 105 10 0 chr3 44928791 44929085 -182595493 + AluSx SINE Alu 1 297 -15 1609 265 94 28 chr3 44929085 44929378 -182595200 + L2 LINE L2 3041 3313 0 1857 196 54 31 chr3 44929821 44930208 -182594370 - MSTD LTR MaLR 0 396 1 1344 239 103 15 chr3 44930449 44930788 -182593790 - MLT1H LTR MaLR -48 501 133 1835 248 191 14 chr3 44931354 44932052 -182592526 + L2 LINE L2 1615 2435 -879 198 0 0 0 chr3 44932065 44932087 -182592491 + (TC)n Simple_repeat Simple_repeat 2 23 0 315 0 0 0 chr3 44932093 44932128 -182592450 + (CA)n Simple_repeat Simple_repeat 2 36 0 1599 162 24 57 chr3 44932133 44932467 -182592111 - L1MC4a LINE L1 -1874 5934 5612 1206 209 24 10 chr3 44932799 44933095 -182591483 - L1MCa LINE L1 -3530 3034 2735 23973 132 22 51 chr3 44933100 44934445 -182590133 - L1MA3 LINE L1 0 7724 6342 2083 145 0 0 chr3 44934445 44934742 -182589836 - AluSx SINE Alu -15 297 1 23973 132 22 51 chr3 44934742 44935245 -182589333 - L1MA3 LINE L1 -1382 6342 5826 678 228 8 0 chr3 44935245 44935368 -182589210 - FLAM_C SINE Alu -18 125 2 23973 132 22 51 chr3 44935368 44935811 -182588767 - L1MA3 LINE L1 -1898 5826 5372 1953 124 59 3 chr3 44935811 44936101 -182588477 - AluSx SINE Alu -6 306 1 23973 132 22 51 chr3 44936101 44937325 -182587253 - L1MA3 LINE L1 -2352 5372 4115 2022 144 0 3 chr3 44937325 44937623 -182586955 - AluSx SINE Alu -15 297 1 23973 132 22 51 chr3 44937623 44938326 -182586252 - L1MA3 LINE L1 -3609 4115 3393 2200 135 3 0 chr3 44938326 44938629 -182585949 - AluSx SINE Alu -8 304 1 23973 132 22 51 chr3 44938629 44938961 -182585617 - L1MA3 LINE L1 -4331 3393 3053 2192 84 22 0 chr3 44938961 44939271 -182585307 - AluY SINE Alu 0 316 1 2149 110 0 0 chr3 44939274 44939565 -182585013 - AluSx SINE Alu -21 291 1 23973 132 22 51 chr3 44939565 44939989 -182584589 - L1MA3 LINE L1 -4673 3051 2616 1928 179 0 3 chr3 44939989 44940290 -182584288 + AluJb SINE Alu 1 300 -12 23973 132 22 51 chr3 44940290 44942596 -182581982 - L1MA3 LINE L1 -5108 2616 14 1557 115 20 31 chr3 44942594 44942654 -182581924 - L1MCa LINE L1 -4434 2130 2071 * 2459 86 0 0 chr3 44942654 44942958 -182581620 + AluSg SINE Alu 1 304 -6 1557 115 20 31 chr3 44942958 44943191 -182581387 - L1MCa LINE L1 -4493 2071 1879 1821 174 16 72 chr3 44943719 44943888 -182580690 - L1MA4 LINE L1 -17 6283 6106 1625 177 10 43 chr3 44943888 44944188 -182580390 - AluJo SINE Alu -22 290 1 1821 174 16 72 chr3 44944188 44944448 -182580130 - L1MA4 LINE L1 -194 6106 5878 375 174 139 0 chr3 44944421 44944485 -182580093 - L1MCa LINE L1 -5024 1021 941 * 261 0 0 0 chr3 44944485 44944514 -182580064 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 375 174 139 0 chr3 44944514 44944535 -182580043 - L1MCa LINE L1 -5104 941 924 841 322 76 11 chr3 44944725 44944818 -182579760 + MLT1I LTR MaLR 1 86 -323 2209 135 0 0 chr3 44944818 44945129 -182579449 - AluSx SINE Alu -1 311 1 841 322 76 11 chr3 44945129 44945417 -182579161 + MLT1I LTR MaLR 86 407 -2 415 267 133 49 chr3 44945417 44945642 -182578936 + L2 LINE L2 2985 3228 -85 544 320 99 32 chr3 44945678 44946022 -182578556 - LTR16C LTR ERVL -28 463 97 215 261 148 0 chr3 44946120 44946208 -182578370 + L2 LINE L2 3213 3313 0 665 226 141 82 chr3 44946417 44946793 -182577785 + MLT1K LTR MaLR 181 578 -10 222 268 158 0 chr3 44946804 44946886 -182577692 + MIR SINE MIR 156 250 -12 227 271 42 59 chr3 44947599 44947717 -182576861 - MIR3 SINE MIR -48 160 45 297 0 0 0 chr3 44947807 44947840 -182576738 + (CA)n Simple_repeat Simple_repeat 2 34 0 3942 205 16 33 chr3 44947857 44948899 -182575679 - L1ME1 LINE L1 -6 6160 5135 1980 139 3 13 chr3 44948941 44949265 -182575313 + AluSx SINE Alu 1 312 0 1806 193 0 0 chr3 44949414 44949710 -182574868 + AluJb SINE Alu 1 296 -16 2049 125 14 3 chr3 44950234 44950531 -182574047 - AluSx SINE Alu -10 302 3 404 214 0 0 chr3 44950634 44950718 -182573860 + L1 LINE L1 2887 2970 -3176 578 190 116 0 chr3 44951134 44951255 -182573323 + MER5A DNA MER1_type 1 135 -54 2186 136 0 0 chr3 44951257 44951566 -182573012 - AluSx SINE Alu -3 309 1 333 276 98 49 chr3 44952406 44952631 -182571947 + LTR16C LTR ERVL 256 491 0 268 282 117 36 chr3 44952832 44952985 -182571593 + MIR SINE MIR 2 166 -42 235 256 26 13 chr3 44953048 44953126 -182571452 + MIR3 SINE MIR 116 194 -14 640 272 67 0 chr3 44953185 44953380 -182571198 + MIR SINE MIR 6 213 -49 2301 237 12 12 chr3 44953385 44953878 -182570700 + MLT1H1 LTR MaLR 1 493 -62 435 227 0 0 chr3 44953878 44953999 -182570579 + FLAM_A SINE Alu 44 164 0 465 113 0 2 chr3 44953999 44954069 -182570509 + MLT1H1 LTR MaLR 481 555 0 1845 182 0 0 chr3 44954351 44954642 -182569936 - AluJo SINE Alu -21 291 1 2128 122 3 31 chr3 44954724 44955043 -182569535 - AluSx SINE Alu -2 310 1 26863 86 8 10 chr3 44955315 44961482 -182563096 - L1PA6 LINE L1 -1 6153 3 279 211 53 0 chr3 44961485 44961542 -182563036 + L2 LINE L2 2986 3045 -227 2205 110 0 0 chr3 44961542 44961842 -182562736 - AluSx SINE Alu -12 300 1 183 42 0 0 chr3 44962089 44962113 -182562465 + (CAA)n Simple_repeat Simple_repeat 3 26 0 610 296 83 14 chr3 44962131 44962219 -182562359 - MIR SINE MIR -7 255 175 981 32 16 0 chr3 44962219 44962342 -182562236 - L1PA4 LINE L1 -1 6154 6030 610 296 83 14 chr3 44962342 44962469 -182562109 - MIR SINE MIR -87 175 25 1274 260 27 3 chr3 44963614 44963914 -182560664 + MLT2E LTR ERVL 1 307 -321 1363 288 50 34 chr3 44964058 44964572 -182560006 + MLT1K LTR MaLR 64 614 -1 204 217 17 83 chr3 44964640 44964700 -182559878 - MIR SINE MIR -119 89 34 372 270 102 29 chr3 44964776 44964913 -182559665 - MIR3 SINE MIR -48 160 14 433 280 104 70 chr3 44965175 44965561 -182559017 + L1MC4a LINE L1 5616 6017 -104 237 202 180 11 chr3 44965869 44965958 -182558620 + LTR67 LTR ERVL 400 503 -54 2164 99 10 0 chr3 44966122 44966424 -182558154 - AluSx SINE Alu -7 305 1 1830 214 102 18 chr3 44967064 44967517 -182557061 - LTR16C LTR ERVL 0 491 1 1544 171 12 0 chr3 44968115 44968360 -182556218 - MLT1A1 LTR MaLR 0 365 118 442 255 13 74 chr3 44968426 44968575 -182556003 - MIR3 SINE MIR -64 144 5 1304 191 3 90 chr3 44969168 44969503 -182555075 + AluSq SINE Alu 1 306 -7 907 188 50 0 chr3 44969517 44969677 -182554901 + Tigger3b DNA MER2_type 1 168 -1063 803 143 8 8 chr3 44969682 44969815 -182554763 + AluJo SINE Alu 2 134 -178 5886 125 40 41 chr3 44969817 44970824 -182553754 + Tigger3b DNA MER2_type 174 1181 -1847 1820 111 37 0 chr3 44970824 44971094 -182553484 - AluSx SINE Alu -32 280 1 5886 125 40 41 chr3 44971094 44971145 -182553433 + Tigger3b DNA MER2_type 1181 1231 0 309 287 145 7 chr3 44971205 44971348 -182553230 - MIR SINE MIR -72 136 28 226 186 0 0 chr3 44971496 44971539 -182553039 - MLT1J LTR MaLR 0 542 500 2231 198 102 11 chr3 44971539 44972059 -182552519 - MLT1F1 LTR MaLR 0 567 1 603 224 0 0 chr3 44973423 44973566 -182551012 + (CA)n Simple_repeat Simple_repeat 1 143 0 246 200 318 0 chr3 44974054 44974139 -182550439 - MIR SINE MIR -72 190 79 1214 181 85 71 chr3 44974141 44974506 -182550072 + MLT1A2 LTR MaLR 1 370 -4 243 214 176 46 chr3 44975417 44975448 -182549130 - HAL1b LINE L1 -25 1323 1297 443 18 18 0 chr3 44975448 44975504 -182549074 + (TAGA)n Simple_repeat Simple_repeat 3 59 0 243 214 176 46 chr3 44975504 44975603 -182548975 - HAL1b LINE L1 -51 1297 1176 379 238 40 10 chr3 44975985 44976086 -182548492 + MER46C DNA MER2_type 233 336 -2 209 311 0 40 chr3 44976161 44976235 -182548343 + MIR SINE MIR 169 239 -23 1320 197 69 14 chr3 44976820 44977110 -182547468 - AluJo SINE Alu -6 306 1 357 309 117 19 chr3 44977921 44978083 -182546495 - MER5B DNA MER1_type 0 178 1 2173 172 81 33 chr3 44978296 44978778 -182545800 - MLT1D LTR MaLR 0 505 1 702 285 73 69 chr3 44978885 44979376 -182545202 - MLT1J LTR MaLR -18 493 1 1964 140 0 10 chr3 44979388 44979702 -182544876 + AluJb SINE Alu 1 311 -1 1931 123 0 38 chr3 44979854 44980172 -182544406 - AluSx SINE Alu -6 306 1 1966 132 13 7 chr3 44980178 44980488 -182544090 - AluSx SINE Alu 0 312 1 328 309 84 98 chr3 44980490 44980940 -182543638 - L2 LINE L2 -1 3271 2828 1082 120 54 62 chr3 44981155 44981397 -182543181 + L1MB3 LINE L1 5937 6176 -7 198 0 0 0 chr3 44981397 44981419 -182543159 + (CA)n Simple_repeat Simple_repeat 2 23 0 723 172 16 16 chr3 44981439 44981567 -182543011 - MER5A DNA MER1_type -61 128 1 24 53 0 0 chr3 44981990 44982028 -182542550 + GC_rich Low_complexity Low_complexity 1 38 0 26 30 0 0 chr3 44982227 44982260 -182542318 + GC_rich Low_complexity Low_complexity 1 33 0 27 62 0 0 chr3 44982512 44982560 -182542018 + GC_rich Low_complexity Low_complexity 1 48 0 21 43 0 0 chr3 44983026 44983049 -182541529 + GC_rich Low_complexity Low_complexity 1 23 0 465 268 54 24 chr3 44984866 44985034 -182539544 + MER69A DNA AcHobo 2 174 -3 513 307 11 6 chr3 44985147 44985326 -182539252 - L1ME LINE L1 -371 5750 5571 1005 198 41 0 chr3 44986734 44986931 -182537647 - MER3 DNA MER1_type -1 208 4 393 296 33 28 chr3 44988200 44988515 -182536063 - LTR16B LTR ERVL 0 464 37 183 320 41 31 chr3 44989074 44989171 -182535407 - MIR SINE MIR -9 253 156 1897 200 11 3 chr3 44989175 44989525 -182535053 - MLT1A1 LTR MaLR -12 353 1 321 196 75 105 chr3 44989531 44989664 -182534914 - MIR SINE MIR -105 157 29 1512 127 11 23 chr3 44990236 44990496 -182534082 + L1MA2 LINE L1 6036 6292 -12 2304 81 0 0 chr3 44990500 44990798 -182533780 - AluY SINE Alu -11 300 3 781 288 32 16 chr3 44991164 44991414 -182533164 + MIR SINE MIR 9 262 0 359 238 0 48 chr3 44992402 44992486 -182532092 - MIR SINE MIR -139 123 44 390 332 24 47 chr3 44992713 44992924 -182531654 - MIR SINE MIR -48 214 9 2366 185 68 16 chr3 44993163 44993661 -182530917 - MLT1H LTR MaLR -13 536 13 2376 119 45 54 chr3 44993757 44994022 -182530556 - MER65A LTR ERV1 0 445 184 309 26 0 0 chr3 44994022 44994060 -182530518 + (TG)n Simple_repeat Simple_repeat 2 39 0 2376 119 45 54 chr3 44994060 44994239 -182530339 - MER65A LTR ERV1 -261 184 5 668 298 15 15 chr3 44994336 44994541 -182530037 - MIR SINE MIR -8 254 50 358 206 19 0 chr3 44995323 44995404 -182529174 + MIR SINE MIR 7 91 -117 500 257 26 13 chr3 44995907 44996059 -182528519 + MIR SINE MIR 103 256 -6 2188 112 0 3 chr3 44996115 44996428 -182528150 + AluSx SINE Alu 1 312 0 547 168 314 0 chr3 44996560 44996697 -182527881 - MER5A DNA MER1_type -1 188 9 2394 243 84 41 chr3 44999359 44999706 -182524872 - L1ME3A LINE L1 0 6170 5839 1844 121 7 4 chr3 44999706 44999979 -182524599 - AluSx SINE Alu -7 305 32 2394 243 84 41 chr3 44999979 45000532 -182524046 - L1ME3A LINE L1 -331 5839 5232 885 193 45 0 chr3 45000547 45000723 -182523855 - AluJo SINE Alu -128 184 1 209 171 0 0 chr3 45001147 45001182 -182523396 + CT-rich Low_complexity Low_complexity 1 35 0 329 292 151 49 chr3 45001182 45001696 -182522882 - L2 LINE L2 -9 3263 2687 1789 159 3 7 chr3 45001697 45002005 -182522573 + AluJb SINE Alu 2 308 -4 480 259 109 47 chr3 45002036 45002229 -182522349 + MIR SINE MIR 31 235 -27 1920 127 10 10 chr3 45002305 45002620 -182521958 - AluSx SINE Alu 0 312 1 185 256 0 0 chr3 45002682 45002721 -182521857 + MER5C DNA MER1_type 38 76 -248 2085 125 6 3 chr3 45002781 45003092 -182521486 + AluSx SINE Alu 1 312 0 1413 223 57 7 chr3 45003669 45004054 -182520524 - L1ME2 LINE L1 -7 6157 5756 880 230 31 5 chr3 45004149 45004345 -182520233 - MER3 DNA MER1_type -1 208 8 292 209 192 58 chr3 45004408 45004580 -182519998 - L1ME3 LINE L1 -1 6161 5967 199 267 33 0 chr3 45004999 45005059 -182519519 - L3b LINE CR1 -416 1167 1106 4109 177 56 14 chr3 45005643 45006495 -182518083 - L1MB2 LINE L1 -1 6170 5283 389 241 0 0 chr3 45007917 45008000 -182516578 - L1ME3A LINE L1 -5 6165 6083 248 290 123 58 chr3 45009683 45009838 -182514740 + MIR SINE MIR 10 174 -88 193 220 20 0 chr3 45010393 45010443 -182514135 + L2 LINE L2 3032 3082 -231 509 175 175 0 chr3 45010443 45010557 -182514021 + L1ME2 LINE L1 6012 6145 -19 306 281 233 45 chr3 45010640 45011082 -182513496 + L2 LINE L2 2452 2976 -338 421 255 63 0 chr3 45011858 45011992 -182512586 + MIR3 SINE MIR 44 187 -21 296 316 34 17 chr3 45013734 45013851 -182510727 - MIR SINE MIR -108 154 36 234 247 165 24 chr3 45014484 45014569 -182510009 - MIR3 SINE MIR -15 193 97 584 230 211 33 chr3 45014615 45014828 -182509750 + MIR SINE MIR 2 252 -10 322 277 241 0 chr3 45016299 45016440 -182508138 + MIR SINE MIR 67 241 -21 553 272 100 0 chr3 45017481 45017661 -182506917 - MIR SINE MIR -8 254 57 326 202 193 37 chr3 45018044 45018153 -182506425 - AluJb SINE Alu -168 134 9 2037 128 0 3 chr3 45018449 45018746 -182505832 + AluSx SINE Alu 1 296 -16 2445 127 19 24 chr3 45018750 45019167 -182505411 - L1MB3 LINE L1 -14 6169 5755 291 349 46 62 chr3 45019238 45019433 -182505145 + MIR3 SINE MIR 17 208 0 3021 152 9 62 chr3 45019725 45020304 -182504274 - LTR10A LTR ERV1 -54 555 8 1827 146 3 3 chr3 45020911 45021206 -182503372 - AluJb SINE Alu -11 301 7 528 248 71 35 chr3 45023556 45023754 -182500824 + MIR SINE MIR 48 252 -10 1733 114 85 0 chr3 45024914 45025186 -182499392 - AluSx SINE Alu -17 295 1 372 266 162 79 chr3 45025399 45025623 -182498955 + L2 LINE L2 2414 2661 -653 545 203 39 0 chr3 45025623 45025751 -182498827 - L1MB5 LINE L1 0 6174 6042 372 266 162 79 chr3 45025751 45025767 -182498811 + L2 LINE L2 2661 2674 -640 658 325 98 24 chr3 45026276 45026695 -182497883 + L2 LINE L2 2412 2861 -453 417 297 129 10 chr3 45026745 45027132 -182497446 - L1ME LINE L1 -413 5708 5265 384 303 23 57 chr3 45027436 45027611 -182496967 - L1ME LINE L1 -1103 5043 4875 209 202 279 39 chr3 45030954 45031058 -182493520 + L2 LINE L2 3180 3308 -5 967 239 25 31 chr3 45031341 45031610 -182492968 - L1ME2 LINE L1 -1 6183 5911 382 125 18 0 chr3 45031830 45031886 -182492692 + MER92B LTR ERV1 2 58 -578 2252 96 7 0 chr3 45032146 45032447 -182492131 - AluSx SINE Alu -9 303 1 641 270 122 5 chr3 45034163 45034359 -182490219 - MIR SINE MIR -15 247 29 294 322 141 33 chr3 45034415 45034536 -182490042 + L2 LINE L2 3138 3271 -1 294 167 0 0 chr3 45034986 45035046 -182489532 + (CCCA)n Simple_repeat Simple_repeat 2 61 0 324 309 178 0 chr3 45035080 45035232 -182489346 + MIR SINE MIR 14 192 -70 1003 197 47 19 chr3 45035234 45035650 -182488928 + L1ME3 LINE L1 5675 6151 -11 180 281 62 16 chr3 45036675 45036739 -182487839 - MER5A DNA MER1_type -87 102 36 404 299 35 28 chr3 45037827 45037971 -182486607 - MER103 DNA DNA -2 164 20 1560 143 86 11 chr3 45039957 45040236 -182484342 - AluJb SINE Alu -12 300 1 202 192 0 39 chr3 45041092 45041144 -182483434 + A-rich Low_complexity Low_complexity 5 54 0 1989 100 37 0 chr3 45041886 45042319 -182482259 - AluSg SINE Alu 0 444 1 901 264 18 25 chr3 45042344 45042621 -182481957 + Charlie8 DNA MER1_type 2 276 -2141 286 131 246 0 chr3 45042676 45042737 -182481841 + Charlie8 DNA MER1_type 2341 2416 -1 1761 62 5 0 chr3 45043244 45043468 -182481110 - L1PA4 LINE L1 -1 6154 5930 674 286 100 9 chr3 45043924 45044144 -182480434 - MIR SINE MIR -2 260 21 1826 137 27 10 chr3 45044371 45044670 -182479908 - AluSx SINE Alu -8 304 1 1565 112 25 17 chr3 45045295 45045536 -182479042 + AluJb SINE Alu 38 280 -32 778 171 0 8 chr3 45045577 45045706 -182478872 + FRAM SINE Alu 33 160 -16 634 284 93 17 chr3 45046095 45046331 -182478247 + MIR SINE MIR 2 255 -7 215 163 20 0 chr3 45047230 45047279 -182477299 + T-rich Low_complexity Low_complexity 2 51 0 405 58 0 0 chr3 45047889 45047941 -182476637 + (TG)n Simple_repeat Simple_repeat 2 53 0 2223 103 0 0 chr3 45048591 45048892 -182475686 - AluSx SINE Alu -5 307 7 211 289 0 0 chr3 45049202 45049254 -182475324 - L2 LINE L2 0 3313 3262 387 244 119 42 chr3 45050165 45050333 -182474245 - MIR SINE MIR -74 188 8 1565 181 34 0 chr3 45052265 45052558 -182472020 + AluJo SINE Alu 1 303 -9 238 311 141 37 chr3 45054405 45054540 -182470038 - MIR SINE MIR 0 262 114 21 36 0 0 chr3 45055105 45055133 -182469445 + AT_rich Low_complexity Low_complexity 1 28 0 1154 219 76 0 chr3 45055384 45055672 -182468906 - MER33 DNA MER1_type -11 313 4 368 285 17 70 chr3 45056588 45056760 -182467818 - L3 LINE CR1 -1 1576 1414 377 266 55 0 chr3 45056802 45056930 -182467648 + MIR SINE MIR 2 136 -126 365 169 15 0 chr3 45056947 45057012 -182467566 - Tigger5 DNA MER2_type 0 2323 2258 342 186 0 0 chr3 45057006 45057065 -182467513 + Tigger5 DNA MER2_type 2259 2317 -6 * 454 215 0 0 chr3 45057067 45057146 -182467432 - Tigger5 DNA MER2_type -2244 79 1 260 200 91 0 chr3 45057147 45057202 -182467376 + MIR SINE MIR 195 254 -8 295 357 39 8 chr3 45057262 45057391 -182467187 - L3 LINE CR1 -295 1282 1150 2131 112 10 7 chr3 45057582 45057887 -182466691 - AluSg SINE Alu -4 306 1 240 376 120 0 chr3 45058062 45058179 -182466399 + L3 LINE CR1 702 832 -745 1691 234 33 5 chr3 45058565 45058962 -182465616 - L1ME2 LINE L1 -9 6155 5748 286 293 49 0 chr3 45058962 45059044 -182465534 - MIR SINE MIR -59 203 118 293 291 100 26 chr3 45059138 45059368 -182465210 - L2 LINE L2 -1339 1975 1729 2372 63 3 3 chr3 45060518 45060820 -182463758 - AluY SINE Alu -9 302 1 185 274 54 118 chr3 45061566 45061752 -182462826 - L2 LINE L2 -94 3178 3005 642 237 160 0 chr3 45064081 45064237 -182460341 + MER5A DNA MER1_type 9 189 0 244 404 40 0 chr3 45064527 45064626 -182459952 - MIR SINE MIR -85 123 21 226 189 473 0 chr3 45064882 45064956 -182459622 - L2 LINE L2 -5 3308 3200 489 200 10 0 chr3 45066538 45066638 -182457940 - LTR33A LTR ERVL -5 518 418 702 120 260 0 chr3 45066676 45066826 -182457752 + MER5A DNA MER1_type 1 189 0 1315 172 236 10 chr3 45066873 45067262 -182457316 - LTR50 LTR ERVL -318 477 1 536 240 8 8 chr3 45067303 45067432 -182457146 - L2 LINE L2 -2 3311 3183 182 192 231 0 chr3 45067496 45067548 -182457030 - L2 LINE L2 -30 3242 3179 493 268 16 0 chr3 45068988 45069115 -182455463 - LTR16C LTR ERVL 0 491 363 2088 160 53 25 chr3 45069124 45069517 -182455061 - MLT2D LTR ERVL -8 406 3 1128 220 132 7 chr3 45069521 45069816 -182454762 - LTR16C LTR ERVL -127 364 33 317 304 88 61 chr3 45070298 45070479 -182454099 + MIR3 SINE MIR 17 202 -6 205 161 0 0 chr3 45071288 45071319 -182453259 + polypyrimidine Low_complexity Low_complexity 2 32 0 389 293 0 10 chr3 45071525 45071624 -182452954 + L2 LINE L2 3196 3293 -20 437 298 50 50 chr3 45073111 45073292 -182451286 + MIR SINE MIR 82 262 0 385 167 69 0 chr3 45073293 45073365 -182451213 + MER116 DNA Mariner 4 80 0 1088 117 12 6 chr3 45074070 45074241 -182450337 + MER53 DNA DNA 1 172 -17 1243 273 26 43 chr3 45075717 45076182 -182448396 + MER113 DNA MER1_type? 30 486 -35 1478 198 42 64 chr3 45077768 45078219 -182446359 + L1ME1 LINE L1 5740 6334 0 565 303 33 6 chr3 45079715 45079929 -182444649 - MIR SINE MIR -6 256 5 233 233 0 0 chr3 45079967 45080010 -182444568 - MIR SINE MIR -21 241 199 2083 162 52 14 chr3 45080154 45080574 -182444004 + MER63B DNA MER1_type 1 436 0 312 208 0 0 chr3 45080609 45080681 -182443897 - L1PA16 LINE L1 -16 6150 6079 23 33 0 0 chr3 45082098 45082128 -182442450 + AT_rich Low_complexity Low_complexity 1 30 0 2161 114 0 0 chr3 45082459 45082758 -182441820 + AluSx SINE Alu 1 299 -13 2031 179 207 2 chr3 45082758 45083261 -182441317 - L1MC4 LINE L1 0 8042 7437 1953 258 128 26 chr3 45083714 45084795 -182439783 - L2 LINE L2 -1 3312 2110 1070 167 9 33 chr3 45085028 45085238 -182439340 + MER3 DNA MER1_type 5 209 0 316 325 52 26 chr3 45085843 45085997 -182438581 + MIR SINE MIR 23 180 -82 368 198 331 0 chr3 45086289 45086410 -182438168 - MER5A DNA MER1_type -13 176 16 255 239 36 174 chr3 45087403 45087650 -182436928 - MIR SINE MIR 0 262 50 194 262 49 33 chr3 45087627 45087688 -182436890 + MIR SINE MIR 37 98 -164 * 229 364 45 0 chr3 45088016 45088126 -182436452 - L2 LINE L2 0 3272 3158 616 151 28 0 chr3 45088246 45088352 -182436226 - MER94 DNA DNA -4 130 22 278 274 78 10 chr3 45088359 45088461 -182436117 - L2 LINE L2 -19 3253 3145 183 80 0 0 chr3 45089008 45089033 -182435545 + (CA)n Simple_repeat Simple_repeat 1 25 0 244 267 12 23 chr3 45089127 45089213 -182435365 + MIR SINE MIR 156 240 -22 326 148 19 0 chr3 45089631 45089685 -182434893 - MER33 DNA MER1_type 0 363 309 6234 52 4 4 chr3 45089685 45090447 -182434131 - L1PA6 LINE L1 -6 6148 5387 887 175 171 25 chr3 45090447 45090501 -182434077 - MER33 DNA MER1_type -2310 275 230 2178 149 8 42 chr3 45090501 45090903 -182433675 - MLT1B LTR MaLR 0 390 3 887 175 171 25 chr3 45090903 45091088 -182433490 - MER33 DNA MER1_type -2355 230 1 243 264 48 56 chr3 45091894 45092019 -182432559 - L3 LINE CR1 -157 1420 1297 244 383 0 0 chr3 45092719 45092800 -182431778 + L2 LINE L2 3185 3265 -7 299 187 13 0 chr3 45092846 45092921 -182431657 - L1M4 LINE L1 -1100 5046 4971 206 259 74 83 chr3 45093095 45093203 -182431375 - MER5A DNA MER1_type -72 117 11 225 280 189 15 chr3 45093748 45093880 -182430698 + MER103 DNA DNA 11 165 -1 350 318 144 0 chr3 45094763 45094936 -182429642 + MIR SINE MIR 35 232 -30 292 151 38 0 chr3 45095223 45095276 -182429302 - MER5A DNA MER1_type -1 188 134 765 156 7 0 chr3 45095288 45095423 -182429155 + L1MB3 LINE L1 6021 6156 -27 525 232 72 0 chr3 45095444 45095569 -182429009 - MER5A DNA MER1_type -55 134 1 589 175 21 0 chr3 45095871 45095968 -182428610 - Tigger7 DNA MER2_type 0 2491 2393 * 810 197 79 0 chr3 45095966 45096118 -182428460 - Tigger7 DNA MER2_type -284 266 103 448 199 11 0 chr3 45096135 45096241 -182428337 - L1MD3 LINE L1 -64 7917 6194 322 329 168 20 chr3 45096457 45096606 -182427972 + L3 LINE CR1 1407 1577 0 2340 104 42 31 chr3 45096785 45097140 -182427438 - THE1B LTR MaLR -5 359 1 11315 95 22 8 chr3 45097140 45098697 -182425881 - THE1B-int LTR MaLR 0 1580 1 311 29 0 0 chr3 45098697 45098732 -182425846 - THE1B LTR MaLR 0 355 321 2203 121 48 25 chr3 45098761 45099117 -182425461 - THE1B LTR MaLR 0 364 1 252 235 0 0 chr3 45099137 45099188 -182425390 - L2 LINE L2 -339 2974 2924 1839 159 49 6 chr3 45099326 45099672 -182424906 + MER46B DNA MER2_type 1 236 0 986 164 28 0 chr3 45101223 45101400 -182423178 - MER5A DNA MER1_type 0 189 8 843 304 8 12 chr3 45102085 45102335 -182422243 + MIR SINE MIR 14 262 0 301 340 92 7 chr3 45102694 45102835 -182421743 - MIR SINE MIR -53 209 57 373 109 18 0 chr3 45102862 45102917 -182421661 - U7 snRNA snRNA -6 57 2 797 203 199 74 chr3 45103044 45103406 -182421172 - MLT1G LTR MaLR 0 590 193 548 297 64 47 chr3 45105142 45105378 -182419200 - MIR SINE MIR -1 261 22 1633 117 44 11 chr3 45106328 45106602 -182417976 - AluJb SINE Alu -25 287 5 830 258 134 87 chr3 45108907 45109369 -182415209 - MLT1J LTR MaLR -25 486 3 234 266 8 16 chr3 45110327 45110398 -182414180 + T-rich Low_complexity Low_complexity 3 123 0 541 285 52 12 chr3 45110519 45110717 -182413861 + MIR SINE MIR 4 207 -55 648 310 120 8 chr3 45110728 45111086 -182413492 - L2 LINE L2 -481 2833 2436 326 315 77 7 chr3 45112720 45112863 -182411715 + Charlie8 DNA MER1_type 1 153 -2264 207 309 49 37 chr3 45113014 45113095 -182411483 + MIR SINE MIR 181 262 0 802 220 130 58 chr3 45113732 45114144 -182410434 - MLT1H LTR MaLR 0 549 41 1901 111 0 4 chr3 45114178 45114470 -182410108 + AluSc SINE Alu 21 311 0 532 253 189 11 chr3 45114548 45114953 -182409625 + LTR33 LTR ERVL 1 521 0 21 0 0 0 chr3 45116858 45116879 -182407699 + AT_rich Low_complexity Low_complexity 1 21 0 253 218 26 0 chr3 45117207 45117285 -182407293 + (TCCA)n Simple_repeat Simple_repeat 4 83 0 354 240 312 0 chr3 45117362 45117516 -182407062 - MIR SINE MIR 0 262 61 1720 260 70 8 chr3 45117789 45118274 -182406304 - MER115 DNA AcHobo -29 664 150 275 337 131 6 chr3 45118686 45118861 -182405717 + MIR SINE MIR 31 227 -35 1559 207 68 50 chr3 45118965 45119572 -182405006 - L2 LINE L2 0 3313 2714 757 288 86 16 chr3 45121883 45122255 -182402323 - MLT1J2 LTR MaLR 0 450 53 1214 197 117 51 chr3 45122729 45122761 -182401817 - MLT1A2 LTR MaLR 0 374 346 1665 169 92 0 chr3 45122761 45123075 -182401503 + MER2 DNA MER2_type 1 343 -1 1214 197 117 51 chr3 45123075 45123393 -182401185 - MLT1A2 LTR MaLR -28 346 1 555 225 184 50 chr3 45124213 45124431 -182400147 + MIR SINE MIR 4 250 -12 1030 184 0 0 chr3 45124456 45124619 -182399959 - FAM SINE Alu -12 163 1 834 173 0 20 chr3 45124755 45124905 -182399673 - AluJb SINE Alu -1 311 165 422 227 17 59 chr3 45125615 45125734 -182398844 - L2 LINE L2 0 3272 3159 216 239 22 0 chr3 45127246 45127292 -182397286 + L2 LINE L2 3223 3269 -3 476 257 196 20 chr3 45127360 45127605 -182396973 - MLT1H LTR MaLR -13 536 249 405 273 78 19 chr3 45127661 45127815 -182396763 + MIR SINE MIR 36 198 -64 193 239 0 0 chr3 45127921 45127967 -182396611 - L2 LINE L2 -339 2975 2930 330 274 0 12 chr3 45128103 45128187 -182396391 - L2 LINE L2 0 3313 3231 1403 241 113 33 chr3 45128811 45129300 -182395278 - MLT1H LTR MaLR 0 549 22 249 289 258 0 chr3 45129368 45129465 -182395113 + MIR SINE MIR 127 248 -14 218 293 80 0 chr3 45129838 45129913 -182394665 - L2 LINE L2 -2 3311 3231 2425 137 40 21 chr3 45131428 45131852 -182392726 - MSTB1 LTR MaLR 0 432 1 216 0 0 0 chr3 45131925 45131949 -182392629 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 216 359 97 7 chr3 45131973 45132118 -182392460 - L2 LINE L2 -5 3308 3151 203 225 0 28 chr3 45132206 45132277 -182392301 + T-rich Low_complexity Low_complexity 2 70 0 571 319 43 29 chr3 45132399 45132609 -182391969 - MIR SINE MIR -49 213 1 1833 170 42 0 chr3 45132841 45133171 -182391407 - MER2 DNA MER2_type 0 344 1 228 328 0 0 chr3 45133415 45133476 -182391102 - MIR SINE MIR -58 150 90 226 180 49 49 chr3 45133788 45133849 -182390729 + L1M4 LINE L1 775 835 -5707 243 336 45 30 chr3 45134611 45134745 -182389833 - L2 LINE L2 -60 3253 3118 651 284 110 16 chr3 45134796 45135106 -182389472 - L2 LINE L2 -339 2975 2637 366 266 93 26 chr3 45135135 45135299 -182389279 + MIR SINE MIR 41 211 -51 607 201 140 0 chr3 45135983 45136147 -182388431 + MER3 DNA MER1_type 23 209 0 863 184 0 39 chr3 45136630 45136809 -182387769 - FRAM SINE Alu -8 168 1 182 361 63 38 chr3 45138950 45139108 -182385470 + L2 LINE L2 3110 3271 -1 1315 173 71 23 chr3 45139230 45139496 -182385082 - MLT1G LTR MaLR -2 588 310 406 252 35 9 chr3 45139513 45139628 -182384950 - MLT1G LTR MaLR -472 123 6 353 264 70 31 chr3 45141034 45141163 -182383415 - L2 LINE L2 -1359 1955 1822 1934 185 80 13 chr3 45141838 45142314 -182382264 - Charlie4a DNA MER1_type 0 508 1 44558 42 4 0 chr3 45142614 45148738 -182375840 - L1PA4 LINE L1 0 6155 9 775 174 106 19 chr3 45148987 45149148 -182375430 - LTR16A1 LTR ERVL -20 437 263 1228 214 134 81 chr3 45149221 45149841 -182374737 - MLT1E1 LTR MaLR -1 653 1 501 306 62 26 chr3 45150085 45150278 -182374300 - MIR SINE MIR -33 229 30 2375 117 31 25 chr3 45150610 45150970 -182373608 + THE1B LTR MaLR 3 364 0 21 71 0 0 chr3 45151744 45151786 -182372792 + AT_rich Low_complexity Low_complexity 1 42 0 1747 68 0 13 chr3 45151789 45152023 -182372555 - AluY SINE Alu -80 231 1 1851 117 43 7 chr3 45152195 45152477 -182372101 + AluSx SINE Alu 1 292 -20 32 0 0 0 chr3 45152542 45152574 -182372004 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr3 45153223 45153249 -182371329 + AT_rich Low_complexity Low_complexity 1 26 0 432 37 0 0 chr3 45153295 45153349 -182371229 + (TG)n Simple_repeat Simple_repeat 2 55 0 198 0 0 0 chr3 45153833 45153855 -182370723 + (T)n Simple_repeat Simple_repeat 1 22 0 228 401 19 0 chr3 45154026 45154183 -182370395 + L2 LINE L2 2550 2709 -605 2067 117 10 0 chr3 45154229 45154536 -182370042 - AluSx SINE Alu -2 310 1 324 310 157 28 chr3 45154750 45155005 -182369573 + L2 LINE L2 2966 3253 -19 262 283 28 128 chr3 45155928 45156012 -182368566 + MIR SINE MIR 71 129 -133 1484 149 30 80 chr3 45156012 45156313 -182368265 + AluJo SINE Alu 6 291 -21 262 283 28 128 chr3 45156313 45156408 -182368170 + MIR SINE MIR 129 232 -30 255 265 143 0 chr3 45157390 45157488 -182367090 + L1MC/D LINE L1 5782 5893 -1915 249 256 156 38 chr3 45158060 45158220 -182366358 + MIR SINE MIR 74 252 -10 477 269 30 8 chr3 45158596 45158730 -182365848 + MIR SINE MIR 70 206 -56 237 242 150 12 chr3 45159008 45159149 -182365429 + MIR3 SINE MIR 15 180 -64 425 242 0 0 chr3 45159930 45160025 -182364553 - LTR16A1 LTR ERVL -2 455 361 775 215 45 36 chr3 45160071 45160294 -182364284 - LTR16A1 LTR ERVL -178 279 55 1165 278 82 92 chr3 45161562 45162715 -182361863 + HAL1 LINE L1 760 1901 -606 2513 158 29 47 chr3 45162856 45163562 -182361016 - Tigger5 DNA MER2_type 0 2323 2 3877 175 25 40 chr3 45163601 45164661 -182359917 + L1M1 LINE L1 3331 4389 -3176 461 124 26 262 chr3 45165076 45165145 -182359433 + MER5A DNA MER1_type 7 91 -98 261 0 0 0 chr3 45165145 45165174 -182359404 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 461 124 26 262 chr3 45165174 45165211 -182359367 + MER5A DNA MER1_type 91 135 -54 10317 29 0 0 chr3 45165211 45167172 -182357406 - L1PA4 LINE L1 -3 6152 4193 461 124 26 262 chr3 45167172 45167235 -182357343 + MER5A DNA MER1_type 135 114 -75 2060 127 7 0 chr3 45167235 45167548 -182357030 - AluSx SINE Alu 0 315 1 461 124 26 262 chr3 45167548 45167607 -182356971 + MER5A DNA MER1_type 113 184 -5 433 237 6 89 chr3 45167681 45167850 -182356728 + HAL1 LINE L1 2245 2399 -108 180 0 0 0 chr3 45168027 45168047 -182356531 + (A)n Simple_repeat Simple_repeat 1 20 0 3003 195 45 3 chr3 45169658 45170257 -182354321 + MLT1E2 LTR MaLR 1 624 -2 839 152 218 0 chr3 45170691 45170856 -182353722 + MER1B DNA MER1_type 1 201 -96 549 195 0 44 chr3 45170834 45170947 -182353631 + MER1B DNA MER1_type 222 329 0 * 230 275 14 0 chr3 45171122 45171191 -182353387 + L2 LINE L2 2542 2611 -703 694 322 34 39 chr3 45171337 45171514 -182353064 + L2 LINE L2 2899 3075 -197 1795 143 13 36 chr3 45171514 45171815 -182352763 - AluJb SINE Alu -18 294 1 694 322 34 39 chr3 45171815 45171994 -182352584 + L2 LINE L2 3075 3253 -19 1413 207 56 7 chr3 45173851 45174156 -182350422 + L1PB4 LINE L1 5825 6144 -12 1978 113 28 0 chr3 45174861 45175145 -182349433 + AluSx SINE Alu 1 292 -20 1165 169 38 5 chr3 45175702 45175915 -182348663 + MER58A DNA MER1_type 1 220 -4 341 181 145 0 chr3 45176834 45176917 -182347661 - MLT1G1 LTR MaLR 0 595 501 4600 152 10 71 chr3 45176929 45177861 -182346717 - L1MA9 LINE L1 -43 6269 5395 637 182 0 33 chr3 45177856 45177926 -182346652 + L1M2 LINE L1 2394 2460 -4389 * 1901 145 0 17 chr3 45177926 45178223 -182346355 + AluJb SINE Alu 10 301 -11 637 182 0 33 chr3 45178223 45178273 -182346305 + L1M2 LINE L1 2460 2510 -4339 2547 225 57 47 chr3 45178273 45179496 -182345082 + L1M1 LINE L1 2999 4264 -3301 1180 244 207 21 chr3 45179515 45179945 -182344633 - MLT1G1 LTR MaLR -82 513 4 2183 103 7 0 chr3 45180000 45180303 -182344275 - AluSq SINE Alu 0 305 1 197 273 0 39 chr3 45180490 45180567 -182344011 - MIR SINE MIR -111 151 78 436 280 13 32 chr3 45181637 45181794 -182342784 - MER69A DNA AcHobo -1 176 23 341 339 18 12 chr3 45182897 45183062 -182341516 + HAL1b LINE L1 486 651 -697 273 116 203 58 chr3 45183662 45183731 -182340847 + MER116 DNA Mariner 1 79 -1 387 0 0 0 chr3 45183763 45183806 -182340772 + (CA)n Simple_repeat Simple_repeat 1 43 0 30147 95 9 5 chr3 45184270 45189447 -182335131 - L1PA7 LINE L1 -2 6152 962 348 24 0 0 chr3 45189556 45189597 -182334981 + (CA)n Simple_repeat Simple_repeat 2 42 0 1055 274 173 31 chr3 45190258 45190704 -182333874 - MLT1H LTR MaLR -17 532 24 1708 144 8 4 chr3 45191696 45191959 -182332619 + AluJb SINE Alu 1 264 -48 21 0 0 0 chr3 45191966 45191987 -182332591 + AT_rich Low_complexity Low_complexity 1 21 0 670 212 35 12 chr3 45193360 45193530 -182331048 + MIR SINE MIR 73 246 -16 309 260 58 0 chr3 45193544 45193648 -182330930 - MIR SINE MIR -64 198 89 2032 102 81 0 chr3 45193994 45194277 -182330301 - AluSp SINE Alu -7 306 1 2314 103 0 7 chr3 45194547 45194849 -182329729 - AluSq SINE Alu -13 300 1 2069 120 10 17 chr3 45195030 45195329 -182329249 - AluSq SINE Alu -16 297 1 264 276 195 8 chr3 45195577 45195700 -182328878 - L2 LINE L2 -1 3271 3126 427 196 112 0 chr3 45195780 45195887 -182328691 - LTR16C LTR ERVL -1 490 372 1014 247 55 12 chr3 45195916 45196371 -182328207 - MLT1H LTR MaLR 0 549 41 380 284 125 68 chr3 45196457 45196633 -182327945 - LTR16C LTR ERVL -237 254 69 372 248 231 31 chr3 45198713 45199007 -182325571 + LTR16A1 LTR ERVL 5 357 -100 1323 215 37 0 chr3 45199972 45200270 -182324308 + Charlie4a DNA MER1_type 1 309 -199 2920 82 0 0 chr3 45201755 45202119 -182322459 + THE1B LTR MaLR 1 364 0 23 68 0 0 chr3 45202349 45202393 -182322185 + AT_rich Low_complexity Low_complexity 1 44 0 854 269 183 12 chr3 45202877 45203309 -182321269 + LTR33A LTR ERVL 18 523 0 252 318 66 33 chr3 45203312 45203463 -182321115 + MIR3 SINE MIR 50 205 -3 1085 267 40 13 chr3 45204748 45205051 -182319527 + LTR16C LTR ERVL 181 491 0 2364 104 0 0 chr3 45205298 45205596 -182318982 - AluSc SINE Alu -11 298 1 609 226 89 11 chr3 45205742 45205932 -182318646 - MER33 DNA MER1_type -115 209 5 589 182 217 61 chr3 45205923 45206121 -182318457 - LTR16C LTR ERVL -189 302 74 * 272 179 285 26 chr3 45207187 45207338 -182317240 + MIR3 SINE MIR 17 206 -2 1419 231 23 12 chr3 45207577 45207923 -182316655 - L1M3 LINE L1 -376 5795 5446 294 300 9 9 chr3 45209026 45209136 -182315442 + MIR3 SINE MIR 56 165 -43 302 276 78 88 chr3 45209304 45209587 -182314991 - L2 LINE L2 -8 3305 3026 193 322 41 25 chr3 45209680 45209801 -182314777 + MIR SINE MIR 109 231 -31 449 230 96 7 chr3 45210693 45210828 -182313750 - LTR67 LTR ERVL 0 557 411 231 253 80 40 chr3 45211000 45211150 -182313428 - LTR67 LTR ERVL -399 158 3 351 298 48 5 chr3 45211322 45211510 -182313068 + L2 LINE L2 1280 1475 -1839 3065 264 156 16 chr3 45211530 45213295 -182311283 + L2 LINE L2 1280 3295 -18 322 276 90 14 chr3 45213334 45213551 -182311027 - MIR3 SINE MIR -26 236 7 1859 119 31 7 chr3 45214223 45214516 -182310062 - AluSx SINE Alu -12 300 1 343 340 45 13 chr3 45215690 45215846 -182308732 - L1ME LINE L1 -310 5811 5651 487 211 81 96 chr3 45215957 45216218 -182308360 - LTR16A1 LTR ERVL -54 403 147 838 299 84 31 chr3 45217536 45217917 -182306661 - LTR16C LTR ERVL -2 489 89 333 245 0 0 chr3 45218549 45218651 -182305927 + (TGGA)n Simple_repeat Simple_repeat 4 105 0 685 197 0 11 chr3 45218657 45218835 -182305743 + (TGGG)n Simple_repeat Simple_repeat 2 177 0 373 348 92 0 chr3 45219599 45219740 -182304838 - L2 LINE L2 -16 3256 3103 332 284 115 79 chr3 45220501 45220917 -182303661 - LTR16C LTR ERVL -2 489 59 381 264 140 75 chr3 45221104 45221396 -182303182 - MER102b DNA MER1_type -28 313 3 297 275 36 34 chr3 45221740 45221894 -182302684 + MIR SINE MIR 19 168 -40 288 0 0 0 chr3 45222164 45222196 -182302382 + (TG)n Simple_repeat Simple_repeat 2 33 0 535 300 66 14 chr3 45224634 45224921 -182299657 - LTR16A1 LTR ERVL 0 457 156 544 277 82 86 chr3 45225498 45225997 -182298581 - MLT1J LTR MaLR -3 508 12 376 317 132 24 chr3 45226284 45226489 -182298089 - L3 LINE CR1 -362 1215 989 344 189 28 0 chr3 45226588 45226671 -182297907 + MER5A DNA MER1_type 4 88 -101 292 320 29 0 chr3 45226954 45227057 -182297521 + L2 LINE L2 1886 1991 -1323 387 0 0 0 chr3 45227059 45227102 -182297476 + (TTA)n Simple_repeat Simple_repeat 3 45 0 6877 54 6 6 chr3 45227105 45228288 -182296290 - L1PA6 LINE L1 -20 6134 4950 1713 224 64 7 chr3 45228283 45228734 -182295844 - L1ME LINE L1 -362 5802 5326 * 2371 259 162 31 chr3 45228734 45229728 -182294850 + L2 LINE L2 1984 2847 -466 1917 134 10 3 chr3 45229728 45230027 -182294551 - AluSx SINE Alu -11 301 1 2371 259 162 31 chr3 45230027 45230109 -182294469 + L2 LINE L2 2847 2917 -396 1744 141 25 7 chr3 45230109 45230392 -182294186 - AluJb SINE Alu -24 288 1 2371 259 162 31 chr3 45230392 45230484 -182294094 + L2 LINE L2 2917 3313 0 1371 274 57 27 chr3 45231026 45231431 -182293147 - LTR16C LTR ERVL 0 491 75 396 274 41 61 chr3 45231947 45232094 -182292484 - MIR SINE MIR -65 143 1 257 250 74 28 chr3 45232753 45232861 -182291717 + LTR16A1 LTR ERVL 345 457 0 253 332 80 16 chr3 45233243 45233430 -182291148 - L1P LINE L1 -2344 3802 3604 655 308 51 5 chr3 45233470 45233684 -182290894 - MIR SINE MIR 0 262 39 1472 238 139 23 chr3 45237766 45238240 -182286338 - MLT1H LTR MaLR -20 529 1 937 197 39 11 chr3 45238267 45238445 -182286133 + MER20 DNA MER1_type 1 183 -36 251 95 0 48 chr3 45238445 45238487 -182286091 + MER20 DNA MER1_type 144 183 -36 * 278 102 0 41 chr3 45238480 45238529 -182286049 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 45238522 45238571 -182286007 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 45238564 45238613 -182285965 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 45238606 45238655 -182285923 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 45238648 45238697 -182285881 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 45238690 45238739 -182285839 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 45238732 45238781 -182285797 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 45238774 45238823 -182285755 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 45238816 45238865 -182285713 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 45238858 45238907 -182285671 + MER20 DNA MER1_type 137 183 -36 278 102 0 41 chr3 45238900 45238949 -182285629 + MER20 DNA MER1_type 137 183 -36 * 440 155 12 24 chr3 45238942 45239026 -182285552 + MER20 DNA MER1_type 137 219 0 380 214 41 110 chr3 45239203 45239348 -182285230 + MIR SINE MIR 2 136 -126 474 303 8 0 chr3 45239378 45239497 -182285081 + MIR SINE MIR 116 235 -27 815 107 0 0 chr3 45240155 45240267 -182284311 + AluSp/q SINE Alu 169 280 -33 459 285 89 0 chr3 45240465 45240623 -182283955 - MIR SINE MIR -89 173 2 409 224 60 17 chr3 45240927 45241043 -182283535 + MER94 DNA DNA 14 134 0 908 202 124 30 chr3 45241211 45241444 -182283134 - MLT1F1 LTR MaLR 0 567 313 907 252 34 53 chr3 45241502 45241768 -182282810 - MLT1F1 LTR MaLR -240 327 67 1358 182 0 0 chr3 45241768 45242004 -182282574 - AluJo SINE Alu -76 236 1 420 133 0 0 chr3 45242004 45242064 -182282514 - MLT1F1 LTR MaLR -503 64 5 200 208 0 75 chr3 45242091 45242144 -182282434 + MIR SINE MIR 188 236 -26 508 270 76 38 chr3 45242780 45243017 -182281561 - MLT1K LTR MaLR -13 575 330 187 301 82 0 chr3 45243213 45243286 -182281292 - MIR SINE MIR -62 146 68 479 286 48 37 chr3 45244350 45244539 -182280039 + MIR SINE MIR 2 192 -70 632 219 67 6 chr3 45244926 45245104 -182279474 + MER5A DNA MER1_type 1 189 0 476 258 104 41 chr3 45245175 45245396 -182279182 + MIR SINE MIR 22 256 -6 228 256 51 13 chr3 45245566 45245644 -182278934 - MIR SINE MIR -67 195 115 394 245 147 35 chr3 45246166 45246309 -182278269 - LTR16A1 LTR ERVL 0 457 299 1790 148 180 11 chr3 45247682 45248048 -182276530 - MSTA LTR MaLR 0 428 1 334 320 25 16 chr3 45248876 45248998 -182275580 + MER5A DNA MER1_type 59 181 -8 302 269 99 43 chr3 45248998 45249139 -182275439 - MER5B DNA MER1_type -4 174 26 189 244 0 0 chr3 45249263 45249304 -182275274 + MER5B DNA MER1_type 138 178 0 419 322 34 0 chr3 45249889 45250035 -182274543 + LTR16C LTR ERVL 97 247 -244 296 256 0 24 chr3 45250047 45250129 -182274449 + LTR16C LTR ERVL 388 467 -24 413 88 184 9 chr3 45250351 45250439 -182274139 - MER5A DNA MER1_type -80 109 4 1693 172 20 3 chr3 45251400 45251702 -182272876 - AluJo SINE Alu -5 307 1 474 299 73 29 chr3 45252170 45252516 -182272062 + L2 LINE L2 2647 3051 -221 4584 186 18 21 chr3 45252580 45253622 -182270956 - L1MB8 LINE L1 -2 6176 5134 1662 187 0 10 chr3 45253622 45253956 -182270622 - AluSx SINE Alu 0 312 1 4584 186 18 21 chr3 45253956 45253988 -182270590 - L1MB8 LINE L1 -1044 5134 5103 2128 95 0 7 chr3 45254799 45255093 -182269485 - AluSq SINE Alu -21 292 1 441 306 169 0 chr3 45255844 45256027 -182268551 + MIR SINE MIR 45 258 -4 303 368 61 18 chr3 45256064 45256227 -182268351 - MIR SINE MIR -85 177 8 290 320 0 0 chr3 45257033 45257111 -182267467 - L2 LINE L2 -4 3309 3232 2077 167 109 0 chr3 45257190 45257567 -182267011 - MER47B DNA MER2_type 0 418 1 21 36 0 0 chr3 45257705 45257733 -182266845 + AT_rich Low_complexity Low_complexity 1 28 0 868 236 130 27 chr3 45259069 45259370 -182265208 - LTR16A1 LTR ERVL 0 457 126 2348 92 0 0 chr3 45259983 45260288 -182264290 - AluSc SINE Alu -4 305 1 259 262 0 60 chr3 45260482 45260566 -182264012 + MER94 DNA DNA 54 132 -2 186 327 18 0 chr3 45260851 45260906 -182263672 + L2 LINE L2 3125 3180 -92 816 88 8 0 chr3 45261500 45261625 -182262953 - AluY SINE Alu -8 303 178 391 212 20 10 chr3 45261866 45261965 -182262613 - L1ME3A LINE L1 -12 6158 6059 245 183 92 58 chr3 45262023 45262143 -182262435 + Charlie7 DNA MER1_type 2450 2573 -39 251 35 0 0 chr3 45263796 45263825 -182260753 + (A)n Simple_repeat Simple_repeat 1 29 0 568 162 86 0 chr3 45263989 45264106 -182260472 + MLT1A2 LTR MaLR 264 374 0 409 247 0 0 chr3 45264106 45264191 -182260387 + MER113 DNA MER1_type? 404 488 -33 197 196 78 20 chr3 45264318 45264369 -182260209 + MIR SINE MIR 51 104 -104 2241 91 3 10 chr3 45264773 45265070 -182259508 - AluSx SINE Alu -17 295 1 198 344 145 8 chr3 45265811 45265942 -182258636 - MIR3 SINE MIR -9 199 51 1159 247 98 27 chr3 45266066 45266144 -182258434 - MER113 DNA MER1_type? -33 488 417 1545 184 20 79 chr3 45266144 45266535 -182258043 - MLT1A2 LTR MaLR -3 371 4 1159 247 98 27 chr3 45266535 45266906 -182257672 - MER113 DNA MER1_type? -104 417 7 1456 212 38 9 chr3 45268017 45268361 -182256217 - L1MC4 LINE L1 0 8042 7689 752 228 11 28 chr3 45269172 45269352 -182255226 - MER5B DNA MER1_type 0 178 2 244 279 0 0 chr3 45269385 45269446 -182255132 - L2 LINE L2 -5 3308 3248 263 231 0 31 chr3 45270708 45270773 -182253805 + CT-rich Low_complexity Low_complexity 1 63 0 334 303 91 5 chr3 45270818 45271016 -182253562 + MIR SINE MIR 32 246 -16 345 194 30 0 chr3 45271098 45271165 -182253413 - MER5B DNA MER1_type -16 162 94 771 240 99 55 chr3 45271369 45271803 -182252775 + LTR16C LTR ERVL 2 454 -37 21 0 0 0 chr3 45273812 45273833 -182250745 + AT_rich Low_complexity Low_complexity 1 21 0 740 220 141 11 chr3 45274913 45275104 -182249474 - MER58B DNA MER1_type -2 339 124 577 206 15 0 chr3 45277371 45277507 -182247071 - L1MB7 LINE L1 0 6184 6047 2339 91 50 84 chr3 45277518 45277960 -182246618 - L1MA2 LINE L1 0 6304 5878 1209 130 36 85 chr3 45277974 45278221 -182246357 - AluJb SINE Alu -1 311 77 401 77 0 0 chr3 45278236 45278288 -182246290 - L1MA2 LINE L1 -418 5887 5836 227 91 0 0 chr3 45278288 45278321 -182246257 - L1MB8 LINE L1 -115 6063 6031 2240 113 3 3 chr3 45278727 45279027 -182245551 + AluSx SINE Alu 6 305 -7 2118 195 82 11 chr3 45279245 45279711 -182244867 - MLT1D LTR MaLR 0 505 7 402 214 1 4 chr3 45279716 45279800 -182244778 - L1MB8 LINE L1 -168 6010 5929 181 299 0 39 chr3 45280092 45280169 -182244409 + MIR3 SINE MIR 87 160 -48 795 194 10 80 chr3 45280171 45280372 -182244206 + MER5A DNA MER1_type 3 189 0 300 314 146 11 chr3 45285354 45285539 -182239039 - MIR SINE MIR -51 211 2 305 283 175 22 chr3 45286162 45286385 -182238193 + L1ME LINE L1 2103 2359 -4037 424 311 60 17 chr3 45286746 45286956 -182237622 + MIR SINE MIR 21 237 -25 395 290 84 79 chr3 45286957 45287634 -182236944 + L1ME LINE L1 2746 3418 -2797 1454 177 73 10 chr3 45287634 45287922 -182236656 + AluJo SINE Alu 3 308 -4 395 290 84 79 chr3 45287922 45288293 -182236285 + L1ME LINE L1 3418 3805 -2410 2810 25 6 6 chr3 45288293 45288611 -182235967 + AluYb8 SINE Alu 1 318 0 395 290 84 79 chr3 45288611 45288925 -182235653 + L1ME LINE L1 3805 4116 -2099 343 322 44 22 chr3 45289073 45289253 -182235325 + L1M4 LINE L1 691 874 -5668 280 215 11 21 chr3 45289306 45289399 -182235179 + (CATATA)n Simple_repeat Simple_repeat 4 95 0 1402 179 76 137 chr3 45289405 45289875 -182234703 + L1M4 LINE L1 880 1377 -5165 2205 115 3 10 chr3 45289875 45290189 -182234389 + AluSx SINE Alu 1 312 0 1402 179 76 137 chr3 45290189 45290200 -182234378 + L1M4 LINE L1 1377 1387 -5155 1559 116 38 134 chr3 45290200 45290544 -182234034 + AluYb8 SINE Alu 1 311 -7 1402 179 76 137 chr3 45290544 45290811 -182233767 + L1M4 LINE L1 1387 1583 -4959 484 302 130 24 chr3 45290834 45291258 -182233320 + L1ME LINE L1 4964 5432 -783 546 134 12 0 chr3 45291265 45291347 -182233231 + AluJ/FLAM SINE Alu 2 84 -228 726 221 193 24 chr3 45291347 45291601 -182232977 + L1ME LINE L1 5427 5723 -467 1723 153 33 47 chr3 45291962 45292437 -182232141 + MER41B LTR ERV1 114 482 -4 2778 163 91 11 chr3 45292453 45293000 -182231578 - LTR49 LTR ERV1 -4 591 1 204 205 39 51 chr3 45293048 45293126 -182231452 + MER5A DNA MER1_type 29 105 -84 271 266 51 0 chr3 45293200 45293279 -182231299 + MIR SINE MIR 102 184 -78 555 217 172 33 chr3 45293294 45293538 -182231040 - L2 LINE L2 -1 3312 3035 228 67 0 0 chr3 45294714 45294744 -182229834 + (A)n Simple_repeat Simple_repeat 1 30 0 696 286 134 24 chr3 45295024 45295360 -182229218 + L2 LINE L2 2922 3294 -19 2392 97 3 0 chr3 45299303 45299602 -182224976 + AluSp SINE Alu 1 300 -13 216 330 32 46 chr3 45299798 45300016 -182224562 + L2 LINE L2 2826 3040 -232 333 78 20 0 chr3 45300246 45300297 -182224281 + MIR SINE MIR 94 145 -117 345 91 0 0 chr3 45300381 45300425 -182224153 - MER94 DNA DNA -89 45 2 290 237 136 8 chr3 45301677 45301795 -182222783 - MIR3 SINE MIR -36 172 40 289 265 26 17 chr3 45301844 45301961 -182222617 + MIR3 SINE MIR 87 204 -4 331 292 46 77 chr3 45302217 45302367 -182222211 + MIR SINE MIR 3 143 -119 2234 113 0 7 chr3 45302367 45302667 -182221911 + AluSx SINE Alu 1 298 -14 331 292 46 77 chr3 45302667 45302776 -182221802 + MIR SINE MIR 143 254 -8 743 176 73 73 chr3 45303849 45304054 -182220524 + L1ME2 LINE L1 5959 6163 -1 1617 150 30 93 chr3 45304653 45304986 -182219592 + AluJb SINE Alu 1 312 0 6093 100 15 16 chr3 45305246 45305599 -182218979 + L1PA14 LINE L1 5124 5476 -685 2297 70 10 10 chr3 45305599 45305900 -182218678 + AluY SINE Alu 1 301 -10 6093 100 15 16 chr3 45305900 45306583 -182217995 + L1PA14 LINE L1 5476 6161 0 2196 242 42 29 chr3 45308032 45308568 -182216010 + L1ME3 LINE L1 5554 6100 -62 2325 92 3 0 chr3 45308568 45308863 -182215715 + AluSx SINE Alu 1 296 -16 2196 242 42 29 chr3 45308863 45308921 -182215657 + L1ME3 LINE L1 6100 6156 -6 180 0 0 0 chr3 45309103 45309123 -182215455 + (T)n Simple_repeat Simple_repeat 1 20 0 2001 145 3 0 chr3 45309327 45309630 -182214948 - AluSx SINE Alu -8 304 1 3996 111 41 44 chr3 45310402 45311103 -182213475 - L1PB4 LINE L1 -2 6154 5456 589 128 0 0 chr3 45311180 45311281 -182213297 + MER5A DNA MER1_type 4 104 -85 266 209 229 9 chr3 45311211 45311316 -182213262 - MER5A DNA MER1_type -23 166 39 * 420 225 254 0 chr3 45311331 45311469 -182213109 - MER5A DNA MER1_type -6 183 11 1262 158 35 0 chr3 45311475 45311677 -182212901 - MER58A DNA MER1_type -4 220 12 2396 82 0 3 chr3 45313079 45313372 -182211206 + AluSg SINE Alu 1 292 -18 26 50 0 0 chr3 45313534 45313574 -182211004 + AT_rich Low_complexity Low_complexity 1 40 0 1535 180 35 18 chr3 45313574 45313857 -182210721 - AluJo SINE Alu -24 288 1 207 0 0 0 chr3 45315693 45315716 -182208862 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1262 165 42 35 chr3 45315720 45315980 -182208598 - AluJo SINE Alu -30 282 21 1270 158 45 0 chr3 45316595 45316851 -182207727 + AluSx SINE Alu 51 316 0 496 181 12 0 chr3 45317058 45317173 -182207405 - AluJb SINE Alu 0 313 198 278 252 72 58 chr3 45318689 45318828 -182205750 - MIR SINE MIR -58 204 64 22 35 0 0 chr3 45319024 45319053 -182205525 + AT_rich Low_complexity Low_complexity 1 29 0 2313 72 0 31 chr3 45319703 45320021 -182204557 + AluY SINE Alu 1 308 -3 259 265 0 51 chr3 45321609 45321707 -182202871 - LTR67 LTR ERVL -32 525 433 200 317 49 12 chr3 45321847 45321929 -182202649 + MIR SINE MIR 159 243 -19 610 295 105 44 chr3 45322445 45323044 -182201534 - L2 LINE L2 -2 3270 2589 455 48 0 16 chr3 45323617 45323680 -182200898 + (CA)n Simple_repeat Simple_repeat 2 63 0 648 262 143 25 chr3 45323828 45324166 -182200412 - LTR16A1 LTR ERVL 0 457 88 304 260 0 13 chr3 45324846 45324923 -182199655 + MIR SINE MIR 176 251 -11 220 294 81 40 chr3 45325862 45326110 -182198468 + L2 LINE L2 175 432 -2882 624 319 127 26 chr3 45326159 45326700 -182197878 + L2 LINE L2 2713 3313 0 565 179 8 8 chr3 45326700 45326834 -182197744 + (TGGA)n Simple_repeat Simple_repeat 2 135 0 1355 170 25 85 chr3 45327281 45327599 -182196979 + AluJb SINE Alu 1 299 -13 24 0 0 29 chr3 45327946 45327959 -182196619 + AT_rich Low_complexity Low_complexity 1 13 -21 1398 146 189 4 chr3 45327959 45328213 -182196365 - AluSx SINE Alu -1 301 1 24 0 0 29 chr3 45328213 45328234 -182196344 + AT_rich Low_complexity Low_complexity 13 34 0 1592 173 7 0 chr3 45328234 45328506 -182196072 - AluJo SINE Alu -26 286 13 470 143 0 0 chr3 45328570 45328640 -182195938 + LTR37B LTR ERV1 10 79 -389 675 201 136 6 chr3 45328654 45328814 -182195764 + MER5A DNA MER1_type 6 189 0 1094 191 60 15 chr3 45328872 45329160 -182195418 + LTR37B LTR ERV1 139 468 0 733 259 14 14 chr3 45329173 45329393 -182195185 - L1ME LINE L1 -297 5824 5605 1396 139 9 9 chr3 45329393 45329623 -182194955 - AluSg/x SINE Alu 0 312 83 216 328 134 0 chr3 45329803 45329922 -182194656 - L2 LINE L2 -492 2822 2688 1392 237 65 63 chr3 45330943 45331113 -182193465 + L1ME3A LINE L1 5710 5878 -292 1798 124 3 49 chr3 45331113 45331420 -182193158 + AluSx SINE Alu 18 310 -2 1392 237 65 63 chr3 45331420 45331709 -182192869 + L1ME3A LINE L1 5878 6170 0 912 172 12 0 chr3 45331717 45331886 -182192692 + AluSg/x SINE Alu 136 306 -6 310 331 110 0 chr3 45331946 45332073 -182192505 - MIR SINE MIR -12 250 110 390 334 136 2 chr3 45332293 45332495 -182192083 + MIR SINE MIR 30 254 -8 661 255 128 16 chr3 45332928 45333116 -182191462 + MER63A DNA MER1_type 2 210 0 188 303 92 0 chr3 45333219 45333295 -182191283 - L2 LINE L2 -47 3225 3143 2077 94 42 3 chr3 45333733 45334021 -182190557 + AluSx SINE Alu 6 304 -8 212 234 31 16 chr3 45334838 45334902 -182189676 + L2 LINE L2 3174 3238 -34 1548 160 50 7 chr3 45335291 45335572 -182189006 - AluJo SINE Alu -19 293 1 628 267 54 93 chr3 45335696 45335895 -182188683 - L1ME LINE L1 -344 5777 5595 1901 116 3 33 chr3 45335895 45336196 -182188382 - AluSq SINE Alu -21 292 1 628 267 54 93 chr3 45336196 45336329 -182188249 - L1ME LINE L1 -526 5595 5458 342 98 0 0 chr3 45336498 45336549 -182188029 + (TG)n Simple_repeat Simple_repeat 1 51 0 418 329 113 5 chr3 45337316 45337529 -182187049 + MIR SINE MIR 3 238 -24 199 280 56 28 chr3 45337524 45337631 -182186947 - L2 LINE L2 -215 3057 2948 * 724 252 45 0 chr3 45337822 45337977 -182186601 + FRAM SINE Alu 1 162 -4 226 349 88 21 chr3 45338022 45338214 -182186364 - L2 LINE L2 -786 2528 2324 1671 232 116 33 chr3 45338769 45339278 -182185300 - MLT1H1 LTR MaLR -4 551 1 2037 121 7 0 chr3 45339307 45339604 -182184974 - AluSx SINE Alu -8 304 6 2132 115 7 0 chr3 45340643 45340939 -182183639 - AluSx SINE Alu -14 298 1 247 240 0 0 chr3 45341760 45341810 -182182768 + CT-rich Low_complexity Low_complexity 1 50 0 242 250 0 18 chr3 45343493 45343549 -182181029 - Tigger5 DNA MER2_type -2268 55 1 2109 86 7 0 chr3 45344506 45344784 -182179794 + AluSx SINE Alu 1 280 -32 458 179 0 53 chr3 45344820 45344915 -182179663 - MER91B DNA MER1_type 0 190 101 580 194 0 48 chr3 45344943 45345067 -182179511 - MER91B DNA MER1_type -60 130 13 2248 94 0 0 chr3 45345550 45345847 -182178731 + AluSx SINE Alu 1 297 -15 612 257 108 11 chr3 45345953 45346400 -182178178 - MLT1H LTR MaLR 0 549 8 976 189 180 9 chr3 45347581 45347814 -182176764 - LTR16C LTR ERVL 0 491 219 234 0 0 0 chr3 45348409 45348435 -182176143 + (A)n Simple_repeat Simple_repeat 1 26 0 2385 75 0 10 chr3 45348468 45348775 -182175803 - AluSx SINE Alu -8 304 1 989 199 47 47 chr3 45350263 45350519 -182174059 - LTR16A1 LTR ERVL 0 457 202 263 261 15 0 chr3 45350813 45350878 -182173700 + MIR SINE MIR 187 252 -10 329 266 13 0 chr3 45351523 45351602 -182172976 - L2 LINE L2 -2 3311 3232 309 309 59 68 chr3 45354093 45354199 -182170379 - L1MEc LINE L1 -2796 3333 3228 4251 120 19 2 chr3 45354199 45354823 -182169755 - MER41B LTR ERV1 0 635 1 309 309 59 68 chr3 45354823 45354952 -182169626 - L1MEc LINE L1 -2901 3228 3100 253 264 50 16 chr3 45355004 45355125 -182169453 + L1ME4a LINE L1 5975 6099 -22 26 0 0 0 chr3 45355769 45355795 -182168783 + AT_rich Low_complexity Low_complexity 1 26 0 741 283 144 25 chr3 45355979 45356340 -182168238 - MLT1J LTR MaLR -2 509 106 559 265 120 23 chr3 45357073 45357436 -182167142 - L1MEc LINE L1 -3700 2429 2072 1833 137 20 17 chr3 45357517 45357817 -182166761 + AluJo SINE Alu 1 301 -11 22 35 0 0 chr3 45357881 45357910 -182166668 + AT_rich Low_complexity Low_complexity 1 29 0 544 308 94 40 chr3 45357954 45359089 -182165489 - L1MEc LINE L1 -4579 1731 463 471 35 0 0 chr3 45359540 45359597 -182164981 + (TC)n Simple_repeat Simple_repeat 2 58 0 299 261 43 9 chr3 45359607 45359722 -182164856 - L1MC4 LINE L1 0 8042 7924 686 98 196 0 chr3 45359739 45359851 -182164727 + AluSp SINE Alu 2 135 -178 1602 100 18 0 chr3 45359851 45360080 -182164498 + AluSq SINE Alu 1 233 -80 2246 81 0 31 chr3 45360191 45360513 -182164065 + AluSx SINE Alu 1 312 0 264 239 88 18 chr3 45360624 45360737 -182163841 + ERVL LTR ERVL 560 680 -5084 316 281 41 62 chr3 45360961 45361107 -182163471 + HAL1 LINE L1 1874 2016 -491 875 174 39 138 chr3 45361137 45361182 -182163396 - MLT1A1 LTR MaLR -34 365 317 1681 143 3 51 chr3 45361182 45361497 -182163081 + AluJb SINE Alu 1 300 -12 875 174 39 138 chr3 45361497 45361604 -182162974 - MLT1A1 LTR MaLR -82 317 201 2411 93 0 0 chr3 45361604 45361916 -182162662 - AluSq SINE Alu -1 312 1 875 174 39 138 chr3 45361916 45362194 -182162384 - MLT1A1 LTR MaLR -198 201 1 1198 260 82 28 chr3 45362194 45362659 -182161919 + HAL1 LINE L1 2018 2507 0 245 375 0 21 chr3 45362950 45363094 -182161484 - LTR16C LTR ERVL -15 476 336 350 295 183 4 chr3 45363938 45364179 -182160399 - L2 LINE L2 -194 3119 2836 2119 96 0 4 chr3 45364400 45364715 -182159863 - AluY SINE Alu 0 315 2 2920 133 84 31 chr3 45364915 45365427 -182159151 + MER44D DNA MER2_type 5 598 -7 284 159 0 0 chr3 45365461 45365505 -182159073 + MER44D DNA MER2_type 662 705 0 2085 124 7 3 chr3 45366234 45366524 -182158054 - AluSx SINE Alu -21 291 1 1330 231 121 36 chr3 45367299 45367534 -182157044 - L1MC4a LINE L1 -1710 6098 5884 1957 145 17 3 chr3 45367534 45367830 -182156748 - AluSx SINE Alu -12 300 1 1330 231 121 36 chr3 45367830 45368122 -182156456 - L1MC4a LINE L1 -1924 5884 5526 199 286 0 33 chr3 45368203 45368294 -182156284 - L2 LINE L2 -5 3308 3221 410 223 111 58 chr3 45368383 45368658 -182155920 - Charlie8 DNA MER1_type -1005 1412 49 445 263 60 67 chr3 45368680 45369011 -182155567 + L1MC4a LINE L1 4632 4960 -1186 10076 152 25 31 chr3 45369024 45370835 -182153743 + L1PA6 LINE L1 11 1810 -4336 22505 63 1 3 chr3 45370835 45374557 -182150021 + L1PA6 LINE L1 2382 6148 -6 2451 60 7 3 chr3 45374582 45374881 -182149697 + AluY SINE Alu 1 300 -11 3679 236 73 69 chr3 45374885 45375092 -182149486 + L1MC4a LINE L1 4957 5162 -984 2186 127 3 0 chr3 45375092 45375399 -182149179 + AluSg SINE Alu 1 308 -2 3679 236 73 69 chr3 45375399 45376194 -182148384 + L1MC4a LINE L1 5162 4471 -1675 192 40 0 0 chr3 45376194 45376219 -182148359 + (CAA)n Simple_repeat Simple_repeat 2 26 0 3679 236 73 69 chr3 45376219 45377152 -182147426 + L1MC4a LINE L1 4470 5398 -748 2747 185 165 34 chr3 45377154 45377911 -182146667 + L1MC4 LINE L1 7185 8040 -2 1559 84 9 23 chr3 45378919 45379134 -182145444 - AluSg/x SINE Alu -18 292 81 365 0 22 0 chr3 45379139 45379184 -182145394 + (TC)n Simple_repeat Simple_repeat 2 47 0 330 26 0 0 chr3 45379183 45379222 -182145356 + (TA)n Simple_repeat Simple_repeat 2 40 0 * 1991 138 0 27 chr3 45379222 45379519 -182145059 - AluJb SINE Alu -23 289 1 247 229 33 0 chr3 45380026 45380087 -182144491 + MIR SINE MIR 93 155 -107 252 130 152 0 chr3 45380237 45380283 -182144295 - Zaphod DNA AcHobo 0 4031 3979 277 333 0 50 chr3 45380353 45380473 -182144105 - MER115 DNA AcHobo -159 534 421 681 299 0 44 chr3 45380503 45380707 -182143871 - MER115 DNA AcHobo -491 202 8 1054 263 53 7 chr3 45380818 45381099 -182143479 + MLT1G1 LTR MaLR 7 300 -295 629 128 20 0 chr3 45381126 45381228 -182143350 + AluSp/q SINE Alu 209 312 -1 2777 158 41 59 chr3 45381228 45381302 -182143276 - MER74A LTR ERVL -10 548 474 2046 116 10 23 chr3 45381302 45381604 -182142974 + AluSx SINE Alu 1 298 -14 2777 158 41 59 chr3 45381604 45382085 -182142493 - MER74A LTR ERVL -84 474 3 752 278 118 8 chr3 45382098 45382343 -182142235 + MLT1G1 LTR MaLR 322 593 -2 21 0 0 0 chr3 45382918 45382939 -182141639 + AT_rich Low_complexity Low_complexity 1 21 0 2011 128 20 3 chr3 45383441 45383745 -182140833 - AluSx SINE Alu -3 309 1 2294 102 3 7 chr3 45385275 45385580 -182138998 - AluSx SINE Alu -8 304 1 181 211 225 14 chr3 45386639 45386710 -182137868 + L2 LINE L2 3180 3265 -48 212 157 10 78 chr3 45387006 45387108 -182137470 + (CAGAGA)n Simple_repeat Simple_repeat 4 98 0 290 318 132 27 chr3 45387265 45387485 -182137093 + L2 LINE L2 2439 2681 -633 2150 119 0 0 chr3 45388078 45388390 -182136188 + AluSx SINE Alu 1 312 0 25 65 0 0 chr3 45388418 45388464 -182136114 + AT_rich Low_complexity Low_complexity 1 46 0 353 164 0 30 chr3 45388785 45388852 -182135726 + L2 LINE L2 3245 3309 -4 23 0 0 0 chr3 45388959 45388982 -182135596 + AT_rich Low_complexity Low_complexity 1 23 0 32 26 0 0 chr3 45391826 45391865 -182132713 + GC_rich Low_complexity Low_complexity 1 39 0 252 224 0 13 chr3 45391965 45392041 -182132537 + CT-rich Low_complexity Low_complexity 1 75 0 23 40 0 0 chr3 45392238 45392263 -182132315 + GC_rich Low_complexity Low_complexity 1 25 0 218 198 52 21 chr3 45392279 45392375 -182132203 + (CCGCG)n Simple_repeat Simple_repeat 3 101 0 30 100 0 0 chr3 45394885 45394985 -182129593 + AT_rich Low_complexity Low_complexity 1 100 0 22 35 0 0 chr3 45394993 45395022 -182129556 + AT_rich Low_complexity Low_complexity 1 29 0 194 189 68 40 chr3 45395065 45395139 -182129439 + MIR SINE MIR 132 207 -55 235 352 0 0 chr3 45395429 45395554 -182129024 + L1MC4a LINE L1 5280 5404 -758 400 245 72 22 chr3 45395700 45395839 -182128739 - MLT1L LTR MaLR -4 611 466 275 283 107 43 chr3 45395869 45396056 -182128522 - MLT1L LTR MaLR -221 394 196 * 284 276 26 13 chr3 45396020 45396096 -182128482 - LTR67 LTR ERVL -385 172 96 485 277 103 46 chr3 45396202 45396552 -182128026 + L1MC4a LINE L1 5627 5996 -1812 4090 162 21 5 chr3 45397058 45397813 -182126765 - L1MD1 LINE L1 0 6636 5870 1068 204 56 56 chr3 45397814 45398133 -182126445 - L1MD2 LINE L1 -12 6347 6029 789 76 38 38 chr3 45398133 45398265 -182126313 - L1MA4A LINE L1 -1 6302 6171 7919 224 54 23 chr3 45398265 45399323 -182125255 - L1MD1 LINE L1 -743 5797 4774 1181 142 54 0 chr3 45399323 45399528 -182125050 - L1MA5A LINE L1 -6 6291 6076 7919 224 54 23 chr3 45399528 45400948 -182123630 - L1MD1 LINE L1 -1766 4774 3324 4940 132 9 6 chr3 45400951 45401732 -182122846 - L1MC1 LINE L1 0 6333 5551 1828 166 62 46 chr3 45401732 45402185 -182122393 - L1MD1 LINE L1 -4829 1711 1252 962 149 5 67 chr3 45402185 45402380 -182122198 - AluJb SINE Alu -43 269 87 3150 238 71 32 chr3 45402380 45402735 -182121843 - L1MD1 LINE L1 -5310 1230 890 2193 114 10 3 chr3 45402735 45403041 -182121537 - AluSc SINE Alu -1 308 1 3150 238 71 32 chr3 45403041 45403815 -182120763 - L1MD1 LINE L1 -5650 890 9 2289 74 3 3 chr3 45404618 45404924 -182119654 + AluSc SINE Alu 1 306 0 547 187 37 87 chr3 45406091 45406133 -182118445 - L1ME1 LINE L1 -2 6164 6121 1772 142 10 17 chr3 45406133 45406428 -182118150 + AluJb SINE Alu 1 293 -19 547 187 37 87 chr3 45406428 45406579 -182117999 - L1ME1 LINE L1 -45 6121 6023 * 1064 248 48 13 chr3 45406562 45406990 -182117588 - L1MC1 LINE L1 -586 5580 5141 * 3629 157 75 20 chr3 45406969 45407006 -182117572 - L1MB3 LINE L1 -3 6180 6146 2385 87 0 0 chr3 45407006 45407295 -182117283 + AluSg SINE Alu 9 297 -13 3629 157 75 20 chr3 45407295 45407831 -182116747 - L1MB3 LINE L1 -37 6146 5641 1816 155 200 0 chr3 45407831 45408186 -182116392 - MSTB LTR MaLR 0 426 1 3629 157 75 20 chr3 45408186 45408275 -182116303 - L1MB3 LINE L1 -542 5641 5558 207 0 0 0 chr3 45408275 45408298 -182116280 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3629 157 75 20 chr3 45408298 45408329 -182116249 - L1MB3 LINE L1 -625 5558 5447 1455 208 47 14 chr3 45408330 45408691 -182115887 - L1MB3 LINE L1 -957 5189 4817 443 278 160 0 chr3 45409904 45410091 -182114487 + MIR SINE MIR 46 262 0 224 213 88 62 chr3 45410102 45410182 -182114396 - L2 LINE L2 -2 3270 3189 519 234 41 41 chr3 45410315 45410486 -182114092 - MIR SINE MIR -58 204 34 449 343 28 0 chr3 45410984 45411162 -182113416 - LTR67 LTR ERVL 0 557 375 189 107 0 0 chr3 45411197 45411225 -182113353 + (A)n Simple_repeat Simple_repeat 1 28 0 2295 113 0 0 chr3 45411422 45411723 -182112855 + AluSx SINE Alu 1 301 -11 358 274 86 34 chr3 45411726 45411901 -182112677 + L1ME3A LINE L1 5764 5947 -223 2130 104 0 37 chr3 45412201 45412336 -182112242 + AluSx SINE Alu 1 139 -173 2542 73 0 0 chr3 45412336 45412636 -182111942 + AluY SINE Alu 1 300 -11 2130 104 0 37 chr3 45412636 45412799 -182111779 + AluSx SINE Alu 139 288 -24 824 189 39 7 chr3 45413556 45413709 -182110869 + Charlie4 DNA MER1_type 20 177 -1784 1198 267 64 9 chr3 45413710 45414130 -182110448 - L1MB3 LINE L1 -2426 3720 3278 723 265 138 21 chr3 45414309 45414686 -182109892 + L1ME4a LINE L1 5689 6109 -12 301 312 149 0 chr3 45416711 45416852 -182107726 - MIR3 SINE MIR -8 200 39 451 354 33 22 chr3 45416936 45417117 -182107461 - MER5A DNA MER1_type 0 189 7 695 251 57 65 chr3 45417600 45417863 -182106715 + MIR SINE MIR 2 262 0 22 35 0 0 chr3 45419186 45419215 -182105363 + AT_rich Low_complexity Low_complexity 1 29 0 2115 266 49 20 chr3 45419515 45420272 -182104306 + HAL1 LINE L1 1040 1818 -689 255 192 232 0 chr3 45420580 45420679 -182103899 + HAL1 LINE L1 2270 2391 -116 229 239 0 0 chr3 45422040 45422086 -182102492 - L1MC4 LINE L1 -1339 6703 6658 339 267 102 11 chr3 45422151 45422327 -182102251 - L1MC4 LINE L1 -1916 5892 5701 516 243 110 46 chr3 45422339 45422512 -182102066 + MIR SINE MIR 30 213 -49 262 191 0 0 chr3 45422522 45422569 -182102009 - MIR SINE MIR 0 262 216 270 306 146 25 chr3 45422793 45423003 -182101575 + MIR3 SINE MIR 15 251 -11 3033 240 73 52 chr3 45424198 45424257 -182100321 - L1ME LINE L1 -4755 1506 1450 1593 153 0 91 chr3 45424257 45424577 -182100001 - AluJo SINE Alu -21 291 1 3033 240 73 52 chr3 45424577 45425894 -182098684 - L1ME LINE L1 -4811 1450 34 507 144 56 0 chr3 45425963 45426053 -182098525 + L1ME2 LINE L1 6070 6164 0 233 306 124 16 chr3 45426252 45426373 -182098205 - L2 LINE L2 -20 3293 3160 1744 176 3 16 chr3 45426700 45427007 -182097571 - AluJb SINE Alu -9 303 1 258 246 33 0 chr3 45427147 45427208 -182097370 + MIR3 SINE MIR 142 204 -4 371 218 13 0 chr3 45428585 45428663 -182095915 - MER116 DNA Mariner 0 80 2 252 207 61 61 chr3 45428674 45428756 -182095822 - MIR SINE MIR 0 262 181 705 272 161 32 chr3 45428797 45429425 -182095153 - L2 LINE L2 0 3313 2170 647 260 45 7 chr3 45429945 45430099 -182094479 + MIR SINE MIR 3 162 -100 308 266 51 0 chr3 45430137 45430216 -182094362 - MIR SINE MIR -93 169 87 254 262 58 10 chr3 45430870 45430957 -182093621 - L1ME LINE L1 -216 5905 5811 2193 125 7 0 chr3 45430957 45431261 -182093317 - AluSx SINE Alu -6 306 1 254 262 58 10 chr3 45431261 45431276 -182093302 - L1ME LINE L1 -310 5811 5798 214 262 24 60 chr3 45431862 45431946 -182092632 + MIR SINE MIR 29 109 -153 599 262 121 42 chr3 45431972 45432377 -182092201 - MLT1J LTR MaLR -34 477 41 200 222 0 0 chr3 45432417 45432453 -182092125 + MIR SINE MIR 96 131 -77 210 246 88 18 chr3 45433071 45433128 -182091450 - MER91C DNA MER1_type -31 109 49 186 308 58 29 chr3 45434538 45434642 -182089936 + L3 LINE CR1 1328 1434 -143 281 285 163 45 chr3 45434970 45435191 -182089387 + L2 LINE L2 2590 2836 -478 217 272 96 37 chr3 45436076 45436212 -182088366 + MIR3 SINE MIR 15 158 -50 525 219 90 19 chr3 45436220 45436375 -182088203 + LTR33 LTR ERVL 1 166 -355 532 254 177 13 chr3 45436410 45436642 -182087936 + LTR33 LTR ERVL 250 519 -2 1020 271 96 28 chr3 45438585 45439054 -182085524 - L1ME4a LINE L1 -263 5841 5341 1115 208 42 13 chr3 45440090 45440326 -182084252 + MIR SINE MIR 13 255 -7 2188 118 0 25 chr3 45440344 45440665 -182083913 + AluSq SINE Alu 1 313 0 1844 107 4 15 chr3 45441921 45442183 -182082395 + AluSq SINE Alu 1 259 -54 446 239 192 0 chr3 45443011 45443141 -182081437 - MIR SINE MIR -12 250 96 1946 162 3 3 chr3 45443184 45443486 -182081092 + AluJb SINE Alu 1 302 -10 2098 236 195 30 chr3 45443924 45445015 -182079563 - L1ME4a LINE L1 -1296 4833 3563 916 192 0 17 chr3 45445022 45445199 -182079379 - AluJb SINE Alu -2 310 137 579 293 110 45 chr3 45445263 45446118 -182078460 - L1MEd LINE L1 -4813 1497 564 2243 170 99 2 chr3 45446501 45446925 -182077653 + MLT1C LTR MaLR 3 467 0 291 203 43 147 chr3 45447279 45447442 -182077136 - L2 LINE L2 0 3272 3127 21 0 0 0 chr3 45447954 45447975 -182076603 + AT_rich Low_complexity Low_complexity 1 21 0 245 265 0 72 chr3 45448308 45448391 -182076187 + MIR SINE MIR 40 116 -92 21 36 0 0 chr3 45449124 45449152 -182075426 + AT_rich Low_complexity Low_complexity 1 28 0 805 193 6 30 chr3 45450128 45450294 -182074284 - MLT1D LTR MaLR 0 505 344 270 259 19 83 chr3 45451614 45451722 -182072856 + L2 LINE L2 3137 3237 -35 351 60 0 0 chr3 45451748 45451798 -182072780 + (CA)n Simple_repeat Simple_repeat 1 50 0 2270 87 0 13 chr3 45452087 45452386 -182072192 + AluSg SINE Alu 1 295 -15 497 238 179 0 chr3 45455672 45455823 -182068755 + MER45A DNA AcHobo 1 178 0 255 31 0 0 chr3 45455970 45456002 -182068576 + (CA)n Simple_repeat Simple_repeat 2 33 0 642 274 61 5 chr3 45456014 45456211 -182068367 + L2 LINE L2 3102 3309 -4 205 279 90 57 chr3 45456922 45457044 -182067534 - L2 LINE L2 -51 3221 3096 * 304 282 84 53 chr3 45457042 45457173 -182067405 + MIR SINE MIR 20 154 -108 610 118 98 0 chr3 45457173 45457275 -182067303 + Tigger4(Zombi) DNA MER2_type 1 112 -2619 545 122 93 9 chr3 45457288 45457395 -182067183 + L1M LINE L1 5283 5398 -770 1610 107 9 0 chr3 45457398 45457631 -182066947 + Tigger4(Zombi) DNA MER2_type 2492 2726 -5 402 21 0 0 chr3 45457768 45457815 -182066763 + (TG)n Simple_repeat Simple_repeat 2 48 0 204 37 0 0 chr3 45457815 45457836 -182066742 + (TA)n Simple_repeat Simple_repeat 2 22 0 4235 148 34 69 chr3 45457836 45458696 -182065882 - L1MB1 LINE L1 -23 6381 5552 6158 182 17 19 chr3 45458723 45459959 -182064619 - L1MB1 LINE L1 -818 5564 4330 2379 98 3 0 chr3 45459959 45460264 -182064314 + AluSx SINE Alu 6 311 -1 501 197 51 0 chr3 45460264 45460381 -182064197 - L1MB1 LINE L1 -3269 3113 2991 982 174 0 22 chr3 45460384 45460562 -182064016 - AluJ SINE Alu -10 302 129 213 154 0 0 chr3 45460577 45460616 -182063962 + (TTA)n Simple_repeat Simple_repeat 1 39 0 737 181 0 9 chr3 45460616 45460732 -182063846 - AluJ SINE Alu -191 121 7 1722 207 88 55 chr3 45460748 45461268 -182063310 - L1MB1 LINE L1 -3381 3001 2413 1683 194 0 22 chr3 45461268 45461583 -182062995 - AluJo SINE Alu -4 308 1 1722 207 88 55 chr3 45461583 45461865 -182062713 - L1MB1 LINE L1 -3969 2413 2142 351 256 101 15 chr3 45462024 45462223 -182062355 + L1ME LINE L1 4601 4816 -1330 687 254 88 68 chr3 45462443 45462997 -182061581 + L1ME LINE L1 5124 5682 -439 2259 108 0 10 chr3 45462997 45463303 -182061275 + AluSx SINE Alu 1 303 -9 687 254 88 68 chr3 45463303 45463338 -182061240 + L1ME LINE L1 5682 5715 -406 319 251 119 88 chr3 45463382 45463677 -182060901 - L1MC4a LINE L1 -1666 6142 5839 783 231 113 28 chr3 45463680 45463892 -182060686 + MIR SINE MIR 2 231 -31 456 253 26 35 chr3 45463916 45464090 -182060488 - L1MC4a LINE L1 -349 5825 5668 1549 199 6 22 chr3 45464168 45464484 -182060094 + AluJb SINE Alu 1 311 -1 237 291 13 0 chr3 45464600 45464679 -182059899 - L1ME4a LINE L1 -60 6061 5982 375 282 16 40 chr3 45464964 45465088 -182059490 - L2 LINE L2 -2 3311 3191 292 258 34 34 chr3 45465598 45465687 -182058891 + MIR SINE MIR 9 97 -165 292 246 214 37 chr3 45465973 45466188 -182058390 + MIR SINE MIR 9 261 -1 198 0 0 0 chr3 45466784 45466806 -182057772 + (A)n Simple_repeat Simple_repeat 1 22 0 2084 174 42 20 chr3 45467127 45467350 -182057228 - MER31A LTR ERV1 0 661 444 1533 238 99 21 chr3 45467350 45467774 -182056804 + MSTB2 LTR MaLR 1 457 0 2084 174 42 20 chr3 45467774 45468014 -182056564 - MER31A LTR ERV1 -217 444 1 1195 87 0 29 chr3 45468788 45468961 -182055617 - AluSg/x SINE Alu 0 312 145 361 274 216 7 chr3 45469371 45469524 -182055054 - MIR SINE MIR -58 204 20 2208 93 0 0 chr3 45469936 45470226 -182054352 + AluSg SINE Alu 1 290 -20 213 353 11 80 chr3 45470255 45470442 -182054136 + L2 LINE L2 3055 3228 -44 1423 258 161 12 chr3 45470460 45470957 -182053621 - MLT1K LTR MaLR -16 572 2 1626 134 98 0 chr3 45471525 45471802 -182052776 - AluSx SINE Alu 0 312 9 1672 176 7 0 chr3 45472482 45472777 -182051801 + AluJb SINE Alu 3 299 -13 955 225 101 5 chr3 45472777 45472995 -182051583 - MIR SINE MIR -15 247 9 209 380 46 0 chr3 45473014 45473122 -182051456 - L2 LINE L2 -623 2691 2579 186 246 15 31 chr3 45473247 45473312 -182051266 - L2 LINE L2 -978 2336 2273 458 333 158 0 chr3 45474274 45474502 -182050076 - L1ME4a LINE L1 -11 6110 5847 195 42 0 0 chr3 45475096 45475120 -182049458 + (TTAG)n Simple_repeat Simple_repeat 2 25 0 1943 85 99 3 chr3 45477411 45477693 -182046885 + AluSq SINE Alu 1 309 -4 2097 82 0 4 chr3 45478126 45478405 -182046173 + AluSq SINE Alu 17 294 -19 334 293 19 89 chr3 45478422 45478579 -182045999 + L1ME4a LINE L1 2273 2450 -3728 767 278 73 48 chr3 45478794 45478913 -182045665 + L1ME4a LINE L1 5332 5447 -674 2714 22 3 0 chr3 45478913 45479228 -182045350 - AluYb8 SINE Alu -2 316 1 767 278 73 48 chr3 45479228 45479637 -182044941 + L1ME4a LINE L1 5447 5872 -249 238 270 126 63 chr3 45479650 45479824 -182044754 + L1ME4a LINE L1 5934 6118 -3 182 240 93 40 chr3 45479834 45479909 -182044669 + L3 LINE CR1 1474 1552 -25 578 315 99 17 chr3 45480636 45481121 -182043457 + HAL1b LINE L1 188 578 -770 2232 84 0 3 chr3 45481193 45481489 -182043089 + AluY SINE Alu 1 295 -16 1740 149 7 14 chr3 45481500 45481789 -182042789 + AluJb SINE Alu 1 287 -25 828 229 0 0 chr3 45482134 45482309 -182042269 + AluJb SINE Alu 137 311 -1 203 133 0 0 chr3 45482319 45482349 -182042229 + (GA)n Simple_repeat Simple_repeat 1 30 0 411 276 153 62 chr3 45482350 45482690 -182041888 - MLT1L LTR MaLR -27 588 218 471 236 45 0 chr3 45482911 45483021 -182041557 - MLT1I LTR MaLR -6 403 289 1674 144 32 16 chr3 45483040 45483352 -182041226 - MER33 DNA MER1_type -2 322 6 649 270 50 40 chr3 45483421 45483621 -182040957 - MLT1I LTR MaLR -207 202 1 339 269 47 7 chr3 45483645 45483794 -182040784 + L1M4 LINE L1 2250 2404 -3742 423 260 31 0 chr3 45483936 45484063 -182040515 + L1M4 LINE L1 4127 4257 -1889 853 153 64 13 chr3 45485230 45485387 -182039191 + MER20 DNA MER1_type 54 218 -1 949 174 6 0 chr3 45485402 45485569 -182039009 + FRAM SINE Alu 1 167 -9 2521 104 17 0 chr3 45485614 45485971 -182038607 + L1PA15 LINE L1 5790 6152 -13 21 36 0 0 chr3 45487271 45487299 -182037279 + AT_rich Low_complexity Low_complexity 1 28 0 538 305 173 16 chr3 45489622 45490045 -182034533 - L1MC4a LINE L1 -1882 5926 5438 876 154 0 7 chr3 45490046 45490195 -182034383 + AluJb SINE Alu 1 148 -164 1875 89 25 21 chr3 45490195 45490323 -182034255 + AluSx SINE Alu 1 127 -179 2200 95 10 0 chr3 45490323 45490627 -182033951 + AluSp SINE Alu 1 307 -6 221 0 0 33 chr3 45490627 45490657 -182033921 + (TA)n Simple_repeat Simple_repeat 2 30 0 441 0 0 0 chr3 45490656 45490705 -182033873 + (CA)n Simple_repeat Simple_repeat 2 50 0 1875 89 25 21 chr3 45490657 45490880 -182033698 + AluSx SINE Alu 126 306 0 352 226 186 24 chr3 45490880 45491037 -182033541 - L1MC4a LINE L1 -674 5447 5280 448 218 26 70 chr3 45491151 45491307 -182033271 - L1 LINE L1 -1094 5052 4904 180 146 21 104 chr3 45492398 45492446 -182032132 - MER5A DNA MER1_type -107 82 39 22 0 0 0 chr3 45493128 45493150 -182031428 + AT_rich Low_complexity Low_complexity 1 22 0 315 0 0 0 chr3 45494156 45494191 -182030387 + (A)n Simple_repeat Simple_repeat 1 35 0 225 224 178 37 chr3 45494350 45494457 -182030121 - MIR SINE MIR -30 232 111 498 319 62 6 chr3 45498845 45499005 -182025573 - MIR3 SINE MIR -19 189 21 423 272 117 99 chr3 45500129 45500574 -182024004 + L2 LINE L2 2816 3268 -4 587 235 117 22 chr3 45502036 45502215 -182022363 + MIR SINE MIR 48 243 -19 279 281 0 0 chr3 45502198 45502255 -182022323 - L2 LINE L2 -7 3265 3209 * 2009 90 32 0 chr3 45502316 45502594 -182021984 + AluSx SINE Alu 1 287 -25 700 200 0 0 chr3 45503809 45503929 -182020649 - L2 LINE L2 -1 3312 3193 1432 109 95 0 chr3 45504042 45504252 -182020326 - MER30 DNA MER1_type 0 230 1 251 183 24 98 chr3 45504964 45505046 -182019532 - L2 LINE L2 -2 3270 3195 669 286 95 21 chr3 45505318 45505643 -182018935 - L2 LINE L2 -503 2811 2463 863 247 11 5 chr3 45506103 45506293 -182018285 + MIR SINE MIR 57 247 -15 2033 89 21 7 chr3 45506451 45506742 -182017836 + AluSc SINE Alu 1 295 -14 1359 236 113 72 chr3 45507241 45507700 -182016878 - L1MC5 LINE L1 -223 7738 7299 1756 143 13 36 chr3 45507700 45508007 -182016571 + AluJb SINE Alu 1 300 -12 1359 236 113 72 chr3 45508007 45508411 -182016167 - L1MC5 LINE L1 -662 7299 6913 2039 140 16 28 chr3 45508411 45508775 -182015803 - MER46B DNA MER2_type -1 235 1 1359 236 113 72 chr3 45508775 45509088 -182015490 - L1MC5 LINE L1 -1048 6913 6500 1496 150 14 51 chr3 45509268 45509414 -182015164 + AluJo SINE Alu 2 133 -179 2003 103 41 0 chr3 45509414 45509706 -182014872 + AluSq SINE Alu 1 304 -9 1496 150 14 51 chr3 45509706 45509852 -182014726 + AluJo SINE Alu 133 283 -29 241 241 78 52 chr3 45509947 45510063 -182014515 - L1MC4a LINE L1 -1635 6173 6055 231 88 0 0 chr3 45511204 45511238 -182013340 + (A)n Simple_repeat Simple_repeat 1 34 0 201 192 19 0 chr3 45513358 45513410 -182011168 + (TA)n Simple_repeat Simple_repeat 1 53 0 235 238 143 0 chr3 45515201 45515264 -182009314 - MIR SINE MIR -88 174 103 414 228 88 47 chr3 45516127 45516298 -182008280 + MER5B DNA MER1_type 1 178 0 263 118 0 20 chr3 45516428 45516479 -182008099 - L1ME4a LINE L1 -23 6098 6049 180 0 0 0 chr3 45517886 45517906 -182006672 + (CA)n Simple_repeat Simple_repeat 2 21 0 712 281 157 16 chr3 45517934 45518446 -182006132 - L2 LINE L2 -10 3303 2700 1013 116 94 77 chr3 45518472 45518663 -182005915 + L1MB3 LINE L1 5940 6137 -46 2064 123 13 0 chr3 45518663 45518963 -182005615 + AluSq SINE Alu 1 304 -9 1013 116 94 77 chr3 45518963 45519004 -182005574 + L1MB3 LINE L1 6137 6176 -7 212 260 13 80 chr3 45521295 45521445 -182003133 + GA-rich Low_complexity Low_complexity 6 145 0 180 152 0 0 chr3 45521449 45521482 -182003096 + G-rich Low_complexity Low_complexity 3 35 0 505 304 77 11 chr3 45522569 45522750 -182001828 - L2 LINE L2 -1 3312 3120 588 198 16 8 chr3 45523390 45523511 -182001067 + AluJb SINE Alu 181 302 -10 2668 168 41 26 chr3 45524641 45525176 -181999402 - L1MB8 LINE L1 -5 6173 5631 223 285 0 58 chr3 45525334 45525471 -181999107 + (CATATA)n Simple_repeat Simple_repeat 5 133 0 683 139 107 25 chr3 45526140 45526262 -181998316 + FRAM SINE Alu 31 162 -14 238 253 228 0 chr3 45526414 45526493 -181998085 - MER91B DNA MER1_type -8 182 86 398 280 110 8 chr3 45526508 45526626 -181997952 - MER91B DNA MER1_type -60 130 1 290 228 18 79 chr3 45526675 45526789 -181997789 - MER94 DNA DNA -4 130 24 224 323 10 10 chr3 45526853 45526952 -181997626 + (CATA)n Simple_repeat Simple_repeat 4 102 0 201 163 0 0 chr3 45529105 45529154 -181995424 + (CGGGG)n Simple_repeat Simple_repeat 5 53 0 191 36 36 0 chr3 45529189 45529217 -181995361 + (CGGGG)n Simple_repeat Simple_repeat 5 33 0 431 310 8 19 chr3 45530306 45530625 -181993953 + GA-rich Low_complexity Low_complexity 1 315 0 214 295 139 16 chr3 45530885 45531014 -181993564 - MIR SINE MIR -96 166 22 238 189 57 0 chr3 45531213 45531266 -181993312 + (CTGGGG)n Simple_repeat Simple_repeat 2 57 0 256 257 59 10 chr3 45533377 45533478 -181991100 - MIR SINE MIR -72 136 31 723 244 75 10 chr3 45535221 45535457 -181989121 + L2 LINE L2 2753 3002 -311 577 193 0 18 chr3 45535456 45535570 -181989008 + L2 LINE L2 3196 3307 -6 * 468 35 0 0 chr3 45537440 45537498 -181987080 + (CA)n Simple_repeat Simple_repeat 2 59 0 276 257 76 0 chr3 45541954 45542059 -181982519 - L1ME4a LINE L1 -32 6089 5977 1440 171 100 32 chr3 45542062 45542343 -181982235 - AluJo SINE Alu -2 310 11 2035 128 7 0 chr3 45542559 45542857 -181981721 - AluSx SINE Alu -12 300 1 1513 186 48 20 chr3 45542926 45543221 -181981357 - AluJo SINE Alu 0 312 10 2428 62 3 3 chr3 45543244 45543552 -181981026 - AluY SINE Alu -3 308 1 313 268 73 0 chr3 45543600 45543723 -181980855 - L1ME4a LINE L1 -218 5903 5772 1747 212 31 12 chr3 45543965 45544447 -181980131 + L1MB8 LINE L1 4335 4825 -1321 4304 154 61 15 chr3 45544481 45544598 -181979980 + L1MB8 LINE L1 5069 5179 -999 729 91 0 0 chr3 45544598 45544697 -181979881 + HY3 scRNA scRNA 1 99 -2 4304 154 61 15 chr3 45544697 45545653 -181978925 + L1MB8 LINE L1 5179 6178 0 1451 199 27 18 chr3 45546092 45546424 -181978154 + MLT1A2 LTR MaLR 28 362 -12 205 291 19 0 chr3 45546936 45547039 -181977539 + (CAGAGA)n Simple_repeat Simple_repeat 2 106 0 1165 154 35 20 chr3 45549282 45549483 -181975095 - MER3 DNA MER1_type -1 208 5 511 282 55 0 chr3 45550906 45551069 -181973509 + MIR SINE MIR 31 202 -60 427 83 0 167 chr3 45552902 45552998 -181971580 - MADE1 DNA Mariner 0 80 1 443 203 227 0 chr3 45553438 45553566 -181971012 - MIR SINE MIR 0 262 106 255 159 0 0 chr3 45555775 45555819 -181968759 - L2 LINE L2 -1 3312 3269 188 132 211 0 chr3 45555968 45556006 -181968572 - MIR SINE MIR -133 129 84 636 116 34 88 chr3 45556186 45556259 -181968319 + Charlie4 DNA MER1_type 1816 1880 -81 1941 97 14 4 chr3 45556259 45556567 -181968011 + AluSx SINE Alu 1 311 0 636 116 34 88 chr3 45556567 45556639 -181967939 + Charlie4 DNA MER1_type 1880 1954 -7 198 222 22 0 chr3 45556873 45556918 -181967660 - MIR SINE MIR -122 86 41 847 279 93 0 chr3 45557339 45557554 -181967024 - MIR SINE MIR -21 241 7 264 320 39 0 chr3 45558475 45558553 -181966025 + L3 LINE CR1 588 668 -909 21 57 0 0 chr3 45559686 45559721 -181964857 + GC_rich Low_complexity Low_complexity 1 35 0 225 267 13 40 chr3 45562278 45562353 -181962225 + MIR SINE MIR 52 124 -138 2091 225 82 62 chr3 45563053 45563292 -181961286 - L2 LINE L2 -2 3311 3078 1697 128 8 0 chr3 45563292 45563543 -181961035 - AluSx SINE Alu -5 307 55 2091 225 82 62 chr3 45563543 45563861 -181960717 - L2 LINE L2 -235 3078 2768 1992 114 10 3 chr3 45563861 45563988 -181960590 + AluSx SINE Alu 1 126 -186 387 0 0 0 chr3 45563988 45564031 -181960547 + (CA)n Simple_repeat Simple_repeat 2 44 0 1992 114 10 3 chr3 45564031 45564211 -181960367 + AluSx SINE Alu 126 312 0 2153 101 10 3 chr3 45564219 45564517 -181960061 + AluSp SINE Alu 1 300 -13 2091 225 82 62 chr3 45564517 45565010 -181959568 - L2 LINE L2 -551 2762 2232 490 241 79 49 chr3 45565042 45565245 -181959333 + L1ME LINE L1 5521 5729 -392 1642 164 28 0 chr3 45565347 45565634 -181958944 - AluSx SINE Alu -17 295 1 21 0 0 0 chr3 45565636 45565657 -181958921 + AT_rich Low_complexity Low_complexity 1 21 0 1147 120 22 11 chr3 45565797 45565981 -181958597 + MER30B DNA MER1_type 1 186 -4 2269 95 0 0 chr3 45565982 45566278 -181958300 + AluSg SINE Alu 1 296 -14 23 33 0 0 chr3 45566305 45566335 -181958243 + AT_rich Low_complexity Low_complexity 1 30 0 1757 185 3 3 chr3 45566342 45566650 -181957928 + AluJo SINE Alu 2 309 -3 220 301 122 16 chr3 45566988 45567111 -181957467 - L2 LINE L2 -1292 2022 1887 353 311 143 24 chr3 45567350 45567601 -181956977 - MER115 DNA AcHobo -244 449 169 840 319 108 2 chr3 45567980 45568416 -181956162 + L2 LINE L2 2395 2876 -438 895 133 0 0 chr3 45568443 45568571 -181956007 - AluJo SINE Alu -178 134 7 279 193 14 82 chr3 45568592 45568714 -181955864 - L1ME LINE L1 -690 5480 5364 238 355 82 0 chr3 45568875 45568985 -181955593 + L2 LINE L2 3153 3271 -1 200 314 78 20 chr3 45569734 45569836 -181954742 - L2 LINE L2 -44 3269 3162 393 187 45 172 chr3 45570320 45570518 -181954060 - L2 LINE L2 0 3313 3141 187 137 137 0 chr3 45570649 45570700 -181953878 + L2 LINE L2 2248 2305 -1009 1395 174 20 24 chr3 45570868 45571023 -181953555 - AluJb SINE Alu -19 293 139 234 0 0 0 chr3 45571023 45571049 -181953529 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1851 100 44 4 chr3 45571049 45571319 -181953259 - AluY SINE Alu -30 281 1 1395 174 20 24 chr3 45571319 45571456 -181953122 - AluJb SINE Alu -171 141 1 2121 99 7 3 chr3 45571580 45571882 -181952696 + AluSg SINE Alu 1 303 -7 274 200 23 43 chr3 45571895 45572002 -181952576 + L1P4 LINE L1 5758 5869 -297 2121 112 3 0 chr3 45572007 45572303 -181952275 - AluSx SINE Alu -15 297 1 26 0 0 0 chr3 45572347 45572373 -181952205 + AT_rich Low_complexity Low_complexity 1 26 0 2243 97 3 0 chr3 45572562 45572861 -181951717 - AluSg SINE Alu -9 301 2 1090 232 16 28 chr3 45573103 45573357 -181951221 + MIR SINE MIR 6 256 -6 1036 147 0 6 chr3 45573708 45573865 -181950713 - AluSq SINE Alu -20 293 138 1274 188 86 24 chr3 45573997 45574289 -181950289 + AluJo SINE Alu 1 310 -2 2078 129 0 13 chr3 45574292 45574609 -181949969 + AluSq SINE Alu 1 313 0 680 164 55 0 chr3 45574612 45574722 -181949856 - FLAM_A SINE Alu -17 116 1 745 303 115 13 chr3 45574870 45575253 -181949325 - LTR16A LTR ERVL -10 440 19 276 293 150 27 chr3 45575316 45575463 -181949115 + MIR3 SINE MIR 36 200 -8 183 200 100 67 chr3 45575547 45575607 -181948971 + L3 LINE CR1 1436 1497 -80 449 259 74 104 chr3 45575713 45575983 -181948595 - L1MC4 LINE L1 -47 7995 7734 2292 120 116 22 chr3 45575987 45576277 -181948301 - MER65A LTR ERV1 0 445 105 2572 102 11 6 chr3 45576277 45576639 -181947939 + THE1B LTR MaLR 1 364 0 2292 120 116 22 chr3 45576639 45576755 -181947823 - MER65A LTR ERV1 -340 105 1 1020 264 112 37 chr3 45576759 45577249 -181947329 - L1MC4 LINE L1 -173 7672 7126 402 289 45 50 chr3 45577292 45577493 -181947085 + L1MC4a LINE L1 5758 5957 -1851 1942 191 85 86 chr3 45577551 45578270 -181946308 - L1MC5 LINE L1 -518 7443 6726 477 343 70 14 chr3 45578470 45578683 -181945895 - MIR SINE MIR -13 249 25 1350 152 0 5 chr3 45580075 45580286 -181944292 - AluJo SINE Alu -17 295 86 1825 131 159 31 chr3 45580351 45580734 -181943844 - MSTB1 LTR MaLR 0 432 1 283 237 0 13 chr3 45580767 45580843 -181943735 + LTR33A LTR ERVL 445 519 -4 1402 126 39 0 chr3 45580953 45581183 -181943395 - AluJb SINE Alu -57 255 17 338 195 24 12 chr3 45582393 45582475 -181942103 + L1MEd LINE L1 101 183 -5936 9860 56 19 59 chr3 45582755 45584195 -181940383 + SVA Other Other 3 1385 -1 189 94 0 0 chr3 45584198 45584230 -181940348 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 1078 266 137 3 chr3 45584345 45584680 -181939898 - LTR40c LTR ERVL -5 460 81 535 273 133 37 chr3 45584738 45585439 -181939139 + L1MEd LINE L1 642 1471 -4839 184 261 29 14 chr3 45585561 45585630 -181938948 - L2 LINE L2 -1265 2049 1980 1471 160 48 4 chr3 45585931 45586043 -181938535 + AluJb SINE Alu 15 121 -191 477 0 0 0 chr3 45586043 45586096 -181938482 + (CA)n Simple_repeat Simple_repeat 2 54 0 1471 160 48 4 chr3 45586096 45586251 -181938327 + AluJb SINE Alu 121 294 -18 2021 125 7 0 chr3 45586279 45586583 -181937995 - AluSx SINE Alu -6 306 1 509 72 0 0 chr3 45586633 45586702 -181937876 + MER41B LTR ERV1 481 549 -86 342 251 192 0 chr3 45586753 45586937 -181937641 + L1P2 LINE L1 5257 5474 -680 285 245 84 97 chr3 45587038 45587182 -181937396 + L1ME3 LINE L1 5689 5830 -332 1969 113 3 17 chr3 45587182 45587482 -181937096 + AluSx SINE Alu 1 296 -16 285 245 84 97 chr3 45587482 45587574 -181937004 + L1ME3 LINE L1 5830 5922 -240 2080 71 50 0 chr3 45587793 45588076 -181936502 - AluY SINE Alu -14 297 1 287 224 7 112 chr3 45588536 45588623 -181935955 - HAL1 LINE L1 0 2507 2439 1468 122 43 12 chr3 45588623 45588878 -181935700 + L1MC1 LINE L1 6071 6333 0 287 224 7 112 chr3 45588878 45588933 -181935645 - HAL1 LINE L1 -68 2439 2380 24 53 0 0 chr3 45588958 45588996 -181935582 + AT_rich Low_complexity Low_complexity 1 38 0 554 244 73 29 chr3 45589243 45589448 -181935130 - MLT1H LTR MaLR -335 214 1 2027 94 39 3 chr3 45590666 45590952 -181933626 - AluSp SINE Alu -17 296 1 182 253 89 38 chr3 45591015 45591094 -181933484 - MIR SINE MIR -8 254 172 1701 122 28 28 chr3 45591131 45591445 -181933133 - AluSx SINE Alu 0 314 1 1506 180 9 31 chr3 45591622 45591939 -181932639 - AluJo SINE Alu -2 310 1 946 187 11 6 chr3 45593267 45593449 -181931129 + AluJo SINE Alu 125 307 -5 305 253 49 122 chr3 45593458 45593762 -181930816 - L1ME4a LINE L1 -56 6065 5784 10013 56 10 55 chr3 45593968 45595418 -181929160 - SVA Other Other -1 1385 1 1237 240 60 88 chr3 45595423 45596102 -181928476 - L1MC5 LINE L1 -51 7910 7251 373 168 30 90 chr3 45596179 45596353 -181928225 - L1MC5 LINE L1 -739 7222 7098 356 338 73 0 chr3 45596362 45596498 -181928080 - L1MC4a LINE L1 -1740 6068 5923 203 286 39 39 chr3 45596883 45596960 -181927618 + L3 LINE CR1 1078 1154 -423 766 252 63 0 chr3 45597181 45597387 -181927191 + HAL1 LINE L1 1592 1810 -697 1464 258 98 69 chr3 45597402 45597742 -181926836 - MLT1G LTR MaLR -2 588 259 1986 143 0 3 chr3 45597742 45598043 -181926535 - AluSx SINE Alu -12 300 1 1464 258 98 69 chr3 45598043 45598209 -181926369 - MLT1G LTR MaLR -331 259 62 1867 136 7 23 chr3 45598209 45598518 -181926060 - AluJo SINE Alu -8 304 1 1464 258 98 69 chr3 45598518 45598573 -181926005 - MLT1G LTR MaLR -528 62 10 1549 255 93 26 chr3 45598600 45599223 -181925355 + HAL1 LINE L1 1841 2505 -2 231 270 107 45 chr3 45599236 45599414 -181925164 + L1M4 LINE L1 3498 3686 -2460 240 275 87 0 chr3 45600354 45600423 -181924155 + MIR SINE MIR 108 182 -80 3339 73 25 5 chr3 45600485 45600924 -181923654 - LTR7 LTR ERV1 -2 448 1 2985 77 21 12 chr3 45600924 45601352 -181923226 - HERVH LTR ERV1 0 7713 7282 2641 63 0 0 chr3 45601334 45601665 -181922913 - HERVH LTR ERV1 -3148 4565 4235 * 421 311 185 9 chr3 45602118 45602340 -181922238 - MIR SINE MIR 0 262 2 333 317 83 58 chr3 45602414 45602739 -181921839 + HAL1 LINE L1 832 1164 -1343 468 304 113 57 chr3 45602767 45603320 -181921258 + L1MEc LINE L1 1903 3516 -2699 498 311 60 17 chr3 45603541 45603751 -181920827 + MIR SINE MIR 21 237 -25 350 290 82 75 chr3 45603752 45604427 -181920151 + L1ME LINE L1 2677 3346 -2800 1350 172 72 14 chr3 45604427 45604718 -181919860 + AluJo SINE Alu 1 308 -4 350 290 82 75 chr3 45604718 45605089 -181919489 + L1ME LINE L1 3346 3737 -2409 2760 6 3 0 chr3 45605089 45605400 -181919178 + AluYb8 SINE Alu 1 312 -6 350 290 82 75 chr3 45605400 45605714 -181918864 + L1ME LINE L1 3737 4047 -2099 348 322 44 22 chr3 45605862 45606042 -181918536 + L1M4 LINE L1 691 874 -5668 330 273 45 11 chr3 45606101 45606189 -181918389 - L1MC4 LINE L1 -1339 6703 6613 1323 177 74 145 chr3 45606194 45606666 -181917912 + L1M4 LINE L1 880 1384 -5158 2090 112 3 10 chr3 45606666 45606980 -181917598 + AluSx SINE Alu 1 312 0 1323 177 74 145 chr3 45606980 45606991 -181917587 + L1M4 LINE L1 1384 1394 -5148 1881 71 24 141 chr3 45606991 45607331 -181917247 + AluSq SINE Alu 1 300 -3 1323 177 74 145 chr3 45607331 45607604 -181916974 + L1M4 LINE L1 1394 1583 -4959 719 299 129 26 chr3 45607627 45608052 -181916526 + L1ME LINE L1 4895 5363 -783 589 133 0 0 chr3 45608059 45608142 -181916436 + AluJ/FLAM SINE Alu 2 84 -228 709 221 193 24 chr3 45608142 45608396 -181916182 + L1ME LINE L1 5358 5654 -467 1792 157 27 45 chr3 45608757 45609234 -181915344 + MER41B LTR ERV1 114 474 -4 2787 162 89 11 chr3 45609250 45609798 -181914780 - LTR49 LTR ERV1 -4 591 1 242 268 196 29 chr3 45609846 45609984 -181914594 + MER5A DNA MER1_type 29 189 0 * 312 305 42 0 chr3 45609984 45610077 -181914501 + MIR SINE MIR 88 184 -78 696 212 167 33 chr3 45610092 45610337 -181914241 - L2 LINE L2 -1 3312 3035 234 0 0 0 chr3 45611513 45611539 -181913039 + (A)n Simple_repeat Simple_repeat 1 26 0 198 283 65 43 chr3 45611723 45611815 -181912763 + L2 LINE L2 2968 3061 -211 838 280 134 24 chr3 45611820 45612156 -181912422 + L2 LINE L2 2922 3294 -19 2285 93 3 0 chr3 45616104 45616404 -181908174 + AluSp SINE Alu 1 301 -12 249 305 43 60 chr3 45616585 45616818 -181907760 + L2 LINE L2 2812 3040 -232 384 96 0 0 chr3 45617049 45617101 -181907477 + MIR SINE MIR 94 145 -117 342 91 0 0 chr3 45617185 45617229 -181907349 - MER94 DNA DNA -89 45 2 333 232 128 24 chr3 45618474 45618549 -181906029 - MIR3 SINE MIR -31 177 90 355 250 32 88 chr3 45618549 45618765 -181905813 + MIR3 SINE MIR 1 204 -4 450 289 46 77 chr3 45619021 45619171 -181905407 + MIR SINE MIR 3 143 -119 2077 117 0 7 chr3 45619171 45619471 -181905107 + AluSx SINE Alu 1 298 -14 450 289 46 77 chr3 45619471 45619580 -181904998 + MIR SINE MIR 143 254 -8 746 176 73 73 chr3 45620657 45620862 -181903716 + L1ME2 LINE L1 5959 6163 -1 1225 194 33 102 chr3 45621461 45621796 -181902782 + AluJo SINE Alu 1 312 0 6396 101 13 16 chr3 45622056 45622412 -181902166 + L1PA14 LINE L1 5124 5480 -681 2367 69 3 10 chr3 45622412 45622716 -181901862 + AluY SINE Alu 1 302 -9 6396 101 13 16 chr3 45622716 45623400 -181901178 + L1PA14 LINE L1 5480 6161 0 548 250 82 5 chr3 45624853 45625037 -181899541 + L1ME4a LINE L1 5557 5754 -416 322 259 26 26 chr3 45625283 45625399 -181899179 + GA-rich Low_complexity Low_complexity 3 118 0 967 199 47 47 chr3 45626947 45627203 -181897375 - LTR16A1 LTR ERVL 0 457 202 247 261 15 0 chr3 45627497 45627562 -181897016 + MIR SINE MIR 187 252 -10 317 303 42 0 chr3 45628207 45628326 -181896252 - L2 LINE L2 -2 3270 3147 4532 113 19 5 chr3 45630881 45631507 -181893071 - MER41B LTR ERV1 0 635 1 304 243 43 43 chr3 45631669 45631809 -181892769 + L1ME4a LINE L1 5960 6099 -22 26 0 0 0 chr3 45632452 45632478 -181892100 + AT_rich Low_complexity Low_complexity 1 26 0 790 276 130 21 chr3 45632676 45633075 -181891503 - MLT1J LTR MaLR -19 492 1 473 259 39 40 chr3 45633753 45634116 -181890462 - L1MEc LINE L1 -3700 2429 2072 1934 137 20 17 chr3 45634197 45634497 -181890081 + AluJo SINE Alu 1 301 -11 22 35 0 0 chr3 45634560 45634589 -181889989 + AT_rich Low_complexity Low_complexity 1 29 0 563 308 93 40 chr3 45634633 45635769 -181888809 - L1MEc LINE L1 -4579 1731 463 471 35 0 0 chr3 45636220 45636277 -181888301 + (TC)n Simple_repeat Simple_repeat 2 58 0 324 261 43 9 chr3 45636287 45636402 -181888176 - L1MC4 LINE L1 0 8042 7924 726 98 196 0 chr3 45636419 45636531 -181888047 + AluSp SINE Alu 2 135 -178 1727 100 13 0 chr3 45636531 45636761 -181887817 + AluSq SINE Alu 1 233 -80 2345 80 0 10 chr3 45636872 45637172 -181887406 + AluSx SINE Alu 1 297 -15 216 0 0 0 chr3 45637412 45637436 -181887142 + (T)n Simple_repeat Simple_repeat 1 24 0 2070 141 0 0 chr3 45637632 45637944 -181886634 - AluSx SINE Alu 0 312 1 4189 111 41 47 chr3 45638716 45639419 -181885159 - L1PB4 LINE L1 -2 6154 5456 626 128 0 0 chr3 45639496 45639597 -181884981 + MER5A DNA MER1_type 4 104 -85 302 209 229 9 chr3 45639527 45639632 -181884946 - MER5A DNA MER1_type -23 166 39 * 466 217 254 0 chr3 45639647 45639785 -181884793 - MER5A DNA MER1_type -6 183 11 1261 158 35 0 chr3 45639791 45639993 -181884585 - MER58A DNA MER1_type -4 220 12 2376 82 0 3 chr3 45641397 45641690 -181882888 + AluSg SINE Alu 1 292 -18 33 25 0 0 chr3 45641853 45641893 -181882685 + AT_rich Low_complexity Low_complexity 1 40 0 1523 180 35 18 chr3 45641893 45642176 -181882402 - AluJo SINE Alu -24 288 1 207 0 0 0 chr3 45644015 45644038 -181880540 + (GTTTG)n Simple_repeat Simple_repeat 2 24 0 1381 166 42 31 chr3 45644042 45644301 -181880277 - AluJo SINE Alu -30 282 21 1593 134 40 4 chr3 45644913 45645166 -181879412 + AluSx SINE Alu 51 312 0 555 145 12 0 chr3 45645377 45645492 -181879086 - AluJb SINE Alu 0 313 198 4310 124 13 9 chr3 45646987 45647665 -181876913 - L1MC1 LINE L1 -102 6231 5551 1884 164 61 46 chr3 45647661 45648118 -181876460 - L1MDa LINE L1 -4825 1715 1252 * 922 148 5 71 chr3 45648118 45648314 -181876264 - AluJb SINE Alu -43 269 87 3195 233 71 32 chr3 45648314 45648669 -181875909 - L1MDa LINE L1 -5310 1230 890 2234 111 7 3 chr3 45648669 45648976 -181875602 - AluSc SINE Alu -1 308 1 3195 233 71 32 chr3 45648976 45649750 -181874828 - L1MDa LINE L1 -5650 890 9 2303 74 0 3 chr3 45650552 45650859 -181873719 + AluSc SINE Alu 1 306 0 557 187 37 87 chr3 45652022 45652064 -181872514 - L1ME1 LINE L1 -2 6164 6121 1787 145 7 17 chr3 45652064 45652360 -181872218 + AluJb SINE Alu 1 293 -19 557 187 37 87 chr3 45652360 45652511 -181872067 - L1ME1 LINE L1 -45 6121 6023 * 1838 207 51 58 chr3 45652494 45652905 -181871673 - L1ME1 LINE L1 -586 5580 5167 3863 144 75 17 chr3 45652905 45652937 -181871641 - L1MB3 LINE L1 -8 6175 6146 2378 86 0 0 chr3 45652937 45653227 -181871351 + AluSg SINE Alu 9 298 -12 3863 144 75 17 chr3 45653227 45653761 -181870817 - L1MB3 LINE L1 -37 6146 5644 1954 152 200 0 chr3 45653761 45654116 -181870462 - MSTB LTR MaLR 0 426 1 3863 144 75 17 chr3 45654116 45654205 -181870373 - L1MB3 LINE L1 -539 5644 5562 207 0 0 0 chr3 45654205 45654228 -181870350 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3863 144 75 17 chr3 45654228 45654259 -181870319 - L1MB3 LINE L1 -621 5562 5447 1838 207 51 58 chr3 45654259 45654621 -181869957 - L1ME1 LINE L1 -999 5167 4817 214 325 73 13 chr3 45655637 45655788 -181868790 + L2 LINE L2 2890 3049 -223 501 286 134 7 chr3 45655791 45656020 -181868558 + MIR SINE MIR 8 262 0 269 207 85 61 chr3 45656031 45656113 -181868465 - L2 LINE L2 -2 3270 3187 24 0 0 0 chr3 45656217 45656241 -181868337 + AT_rich Low_complexity Low_complexity 1 24 0 592 246 34 34 chr3 45656245 45656420 -181868158 - MIR SINE MIR -58 204 30 499 331 28 0 chr3 45656914 45657092 -181867486 - LTR67 LTR ERVL 0 557 375 189 107 0 0 chr3 45657126 45657154 -181867424 + (A)n Simple_repeat Simple_repeat 1 28 0 2236 113 3 0 chr3 45657351 45657651 -181866927 + AluSx SINE Alu 1 301 -11 373 264 92 35 chr3 45657654 45657828 -181866750 + L1ME3A LINE L1 5764 5947 -223 1001 83 15 0 chr3 45658128 45658261 -181866317 + AluSq/x SINE Alu 1 135 -178 1779 137 0 51 chr3 45658261 45658576 -181866002 + AluY SINE Alu 1 299 -12 869 192 34 107 chr3 45658578 45658687 -181865891 - MLT1A1 LTR MaLR -60 365 250 2481 85 3 0 chr3 45658687 45658994 -181865584 - AluSp SINE Alu -5 308 1 869 192 34 107 chr3 45658994 45659271 -181865307 - MLT1A1 LTR MaLR -175 250 1 1283 260 79 28 chr3 45659271 45659737 -181864841 + HAL1 LINE L1 2018 2507 0 557 64 13 0 chr3 45660571 45660649 -181863929 + (GGAAA)n Simple_repeat Simple_repeat 2 80 0 217 296 12 47 chr3 45660779 45660948 -181863630 + G-rich Low_complexity Low_complexity 5 167 0 343 179 0 24 chr3 45661775 45661859 -181862719 + GA-rich Low_complexity Low_complexity 2 83 0 277 261 37 12 chr3 45661930 45662091 -181862487 + (TG)n Simple_repeat Simple_repeat 1 165 0 212 290 0 0 chr3 45662098 45662160 -181862418 + G-rich Low_complexity Low_complexity 4 65 0 1737 143 7 0 chr3 45713693 45713965 -181810613 + AluSx SINE Alu 12 285 -27 675 198 56 0 chr3 45713970 45714096 -181810482 - FLAM_A SINE Alu 0 133 1 1109 252 54 55 chr3 45714100 45714612 -181809966 - L1ME LINE L1 -344 5818 5307 1884 142 0 17 chr3 45714612 45714924 -181809654 - AluSx SINE Alu 0 307 1 1109 252 54 55 chr3 45714924 45715789 -181808789 - L1ME LINE L1 -855 5307 4281 624 290 25 33 chr3 45715795 45716071 -181808507 - L1ME LINE L1 -1956 4190 3917 2424 153 52 0 chr3 45716842 45717247 -181807331 + MSTC LTR MaLR 3 428 0 322 241 38 89 chr3 45718136 45718294 -181806284 + LTR58 LTR ERV1 197 449 -230 1696 155 48 170 chr3 45718434 45719097 -181805481 - LTR8A LTR ERV1 0 727 146 1125 114 12 0 chr3 45719101 45719268 -181805310 + AluYa5 SINE Alu 136 304 -7 598 178 44 44 chr3 45719268 45719403 -181805175 - LTR8 LTR ERV1 -556 135 1 257 235 174 10 chr3 45719556 45719654 -181804924 + L2 LINE L2 2947 3060 -212 204 244 217 9 chr3 45720188 45720303 -181804275 - L2 LINE L2 -5 3308 3170 1016 155 61 0 chr3 45720690 45720871 -181803707 + MER3 DNA MER1_type 8 199 -10 440 161 140 0 chr3 45720873 45720966 -181803612 + MER5A DNA MER1_type 77 182 -7 843 277 56 23 chr3 45720969 45721453 -181803125 + L1ME3 LINE L1 2806 3305 -2841 3266 161 14 5 chr3 45721456 45722039 -181802539 + L1MB8 LINE L1 5586 6173 -5 1542 173 43 27 chr3 45722040 45722340 -181802238 - AluJb SINE Alu -7 305 1 460 284 60 32 chr3 45722356 45722633 -181801945 + L1MC/D LINE L1 5475 5761 -379 951 205 6 6 chr3 45722708 45722874 -181801704 + FRAM SINE Alu 1 166 0 862 137 53 0 chr3 45723195 45723326 -181801252 + FRAM SINE Alu 26 163 -13 231 246 57 85 chr3 45723360 45723571 -181801007 + L1ME3 LINE L1 3574 3778 -2368 296 156 0 0 chr3 45723589 45723634 -181800944 + AluSq/x SINE Alu 86 130 -173 2242 102 0 0 chr3 45723634 45723955 -181800623 + AluSx SINE Alu 1 321 0 2001 98 36 4 chr3 45723961 45724257 -181800321 + AluSx SINE Alu 1 305 0 554 291 123 48 chr3 45724303 45724798 -181799780 + L1ME3 LINE L1 3768 4299 -1847 266 226 59 29 chr3 45725577 45725679 -181798899 + L2 LINE L2 3168 3272 0 352 295 137 27 chr3 45726637 45726782 -181797796 - L1M4 LINE L1 -2884 3262 3134 1761 175 45 0 chr3 45726782 45726794 -181797784 - AluJo SINE Alu -7 305 295 960 114 0 0 chr3 45726794 45726943 -181797635 + (TCC)n Simple_repeat Simple_repeat 2 150 0 1761 175 45 0 chr3 45726943 45727222 -181797356 - AluJo SINE Alu -17 295 1 352 295 137 27 chr3 45727222 45727258 -181797320 - L1M4 LINE L1 -3012 3134 3103 1873 199 37 26 chr3 45727258 45727541 -181797037 - MLT1C LTR MaLR 0 467 176 2377 83 20 0 chr3 45727541 45727843 -181796735 - AluSp SINE Alu -5 308 1 1873 199 37 26 chr3 45727843 45728021 -181796557 - MLT1C LTR MaLR -291 176 1 352 295 137 27 chr3 45728021 45728241 -181796337 - L1M4 LINE L1 -3043 3103 2816 887 161 19 25 chr3 45728435 45728596 -181795982 + L1PB4 LINE L1 5997 6156 0 827 181 0 0 chr3 45729204 45729337 -181795241 - FLAM_C SINE Alu 0 133 1 2230 131 0 3 chr3 45729445 45729758 -181794820 + AluSx SINE Alu 1 312 0 515 324 50 35 chr3 45730311 45731037 -181793541 + L1ME3 LINE L1 5043 5784 -386 2510 192 56 40 chr3 45731077 45731651 -181792927 - MER119 DNA MER1_type 0 583 1 1617 175 28 72 chr3 45731717 45732106 -181792472 + MLT1A2 LTR MaLR 1 372 -2 500 81 267 0 chr3 45732240 45732326 -181792252 + MER30B DNA MER1_type 1 109 -81 414 0 0 0 chr3 45732344 45732390 -181792188 + (TTA)n Simple_repeat Simple_repeat 3 48 0 9801 31 0 0 chr3 45732390 45734285 -181790293 - L1PA3 LINE L1 -18 6137 4243 4226 25 19 0 chr3 45734285 45734772 -181789806 + L1PA3 LINE L1 3747 4242 -1904 736 154 0 0 chr3 45734772 45734876 -181789702 + MER30B DNA MER1_type 127 230 0 778 107 41 0 chr3 45735021 45735143 -181789435 - LTR54 LTR ERV1 0 510 384 4733 102 10 49 chr3 45735145 45735864 -181788714 - LTR8 LTR ERV1 0 691 1 259 191 16 32 chr3 45735864 45735927 -181788651 + MIR SINE MIR 91 152 -110 564 188 156 25 chr3 45735928 45736088 -181788490 + L1ME3 LINE L1 5921 6101 -61 2143 97 10 13 chr3 45736089 45736224 -181788354 + AluSq SINE Alu 1 135 -178 2311 98 3 0 chr3 45736224 45736520 -181788058 + AluSp SINE Alu 1 297 -16 2143 97 10 13 chr3 45736520 45736682 -181787896 + AluSq SINE Alu 135 297 -16 235 196 59 0 chr3 45736770 45736821 -181787757 + MIR SINE MIR 137 190 -72 22 0 0 0 chr3 45738019 45738041 -181786537 + GC_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr3 45738055 45738102 -181786476 + GC_rich Low_complexity Low_complexity 1 47 0 1997 114 13 10 chr3 45738402 45738701 -181785877 + AluJo SINE Alu 3 302 -10 245 333 0 0 chr3 45738986 45739061 -181785517 + MIR3 SINE MIR 82 156 -52 405 290 102 60 chr3 45739829 45740519 -181784059 - L2 LINE L2 0 3313 2593 1947 169 12 64 chr3 45740654 45741062 -181783516 - MLT1B LTR MaLR -3 387 1 2256 174 60 72 chr3 45741302 45741864 -181782714 - L1M4 LINE L1 -2717 3429 2875 2048 111 0 88 chr3 45741864 45742205 -181782373 + AluSx SINE Alu 1 311 -1 2256 174 60 72 chr3 45742205 45742325 -181782253 - L1M4 LINE L1 -3271 2875 2755 1909 231 60 31 chr3 45742526 45743111 -181781467 - L1ME1 LINE L1 -5 6161 5560 836 73 0 0 chr3 45743200 45743309 -181781269 - AluY SINE Alu -1 310 202 639 235 50 0 chr3 45743316 45743531 -181781047 + L1MC4a LINE L1 5767 5822 -332 1800 179 0 7 chr3 45743531 45743832 -181780746 + AluJb SINE Alu 1 299 -13 868 108 0 0 chr3 45743926 45744037 -181780541 - AluY SINE Alu -200 111 1 294 309 73 27 chr3 45744080 45744300 -181780278 - L1ME1 LINE L1 -1005 5141 4912 1802 148 10 22 chr3 45744306 45744617 -181779961 - AluJb SINE Alu -5 307 1 1981 127 0 0 chr3 45744647 45744914 -181779664 + AluSx SINE Alu 37 303 -9 505 276 24 83 chr3 45745026 45745086 -181779492 - L1ME1 LINE L1 -1356 4790 4728 2170 106 20 0 chr3 45745086 45745379 -181779199 - AluSx SINE Alu -13 299 1 505 276 24 83 chr3 45745379 45745516 -181779062 - L1ME1 LINE L1 -1418 4728 4584 2113 134 0 3 chr3 45745516 45745815 -181778763 - AluSx SINE Alu -14 298 1 505 276 24 83 chr3 45745815 45745989 -181778589 - L1ME1 LINE L1 -1562 4584 4440 1576 184 172 42 chr3 45745995 45746467 -181778111 + MLT1H LTR MaLR 3 535 -14 1189 201 70 38 chr3 45746599 45746912 -181777666 + MLT1J1 LTR MaLR 69 391 -55 2288 105 0 3 chr3 45746980 45747286 -181777292 + AluY SINE Alu 1 305 -6 1353 195 58 0 chr3 45747293 45747585 -181776993 - L1MB7 LINE L1 -16 6168 5860 3081 147 49 46 chr3 45747641 45747827 -181776751 - L1MB7 LINE L1 -301 5877 5693 1564 205 62 52 chr3 45747827 45748213 -181776365 + MLT1B LTR MaLR 1 390 0 3081 147 49 46 chr3 45748213 45748401 -181776177 - L1MB7 LINE L1 -485 5693 5507 2549 55 0 0 chr3 45748401 45748691 -181775887 - AluY SINE Alu -17 294 5 3081 147 49 46 chr3 45748691 45749089 -181775489 - L1MB7 LINE L1 -671 5507 5107 1964 91 12 4 chr3 45749223 45749477 -181775101 + AluY SINE Alu 29 284 -27 672 198 56 0 chr3 45749482 45749608 -181774970 - FLAM_A SINE Alu 0 133 1 1120 249 56 55 chr3 45749612 45750122 -181774456 - L1ME LINE L1 -344 5818 5310 2002 142 0 17 chr3 45750122 45750434 -181774144 - AluSx SINE Alu 0 307 1 1120 249 56 55 chr3 45750434 45751298 -181773280 - L1ME LINE L1 -852 5310 4281 634 275 36 43 chr3 45751304 45751580 -181772998 - L1ME LINE L1 -1956 4190 3917 2430 153 52 0 chr3 45752351 45752756 -181771822 + MSTC LTR MaLR 3 428 0 320 260 0 39 chr3 45753645 45753749 -181770829 + LTR58 LTR ERV1 350 449 -230 1701 154 48 170 chr3 45753943 45754606 -181769972 - LTR8A LTR ERV1 0 727 146 1192 114 12 0 chr3 45754610 45754777 -181769801 + AluYa5 SINE Alu 136 304 -7 599 178 44 44 chr3 45754777 45754912 -181769666 - LTR8 LTR ERV1 -556 135 1 230 146 0 0 chr3 45755122 45755163 -181769415 + L2 LINE L2 3020 3060 -212 1028 155 61 0 chr3 45756199 45756380 -181768198 + MER3 DNA MER1_type 8 199 -10 398 161 140 0 chr3 45756382 45756475 -181768103 + MER5A DNA MER1_type 77 182 -7 874 269 60 27 chr3 45756478 45756962 -181767616 + L1MC/D LINE L1 2806 3305 -2841 3201 161 14 5 chr3 45756965 45757548 -181767030 + L1MB8 LINE L1 5586 6173 -5 1542 173 43 27 chr3 45757549 45757849 -181766729 - AluJb SINE Alu -7 305 1 446 278 69 35 chr3 45757865 45758141 -181766437 + L1MC/D LINE L1 5475 5761 -379 983 193 6 6 chr3 45758216 45758382 -181766196 + FRAM SINE Alu 1 166 0 862 137 53 0 chr3 45758703 45758834 -181765744 + FRAM SINE Alu 26 163 -13 231 246 57 85 chr3 45758868 45759079 -181765499 + L1M4 LINE L1 3574 3778 -2368 296 156 0 0 chr3 45759097 45759142 -181765436 + AluSg/x SINE Alu 84 128 -172 2242 102 0 0 chr3 45759142 45759463 -181765115 + AluSx SINE Alu 1 321 0 2001 98 36 4 chr3 45759469 45759765 -181764813 + AluSx SINE Alu 1 305 0 554 291 123 48 chr3 45759811 45760306 -181764272 + L1M4 LINE L1 3768 4299 -1847 266 226 59 29 chr3 45761085 45761187 -181763391 + L2 LINE L2 3168 3272 0 186 71 0 0 chr3 45762133 45762161 -181762417 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 702 201 11 6 chr3 45762302 45762481 -181762097 + CT-rich Low_complexity Low_complexity 1 180 0 433 231 7 20 chr3 45762462 45762609 -181761969 + C-rich Low_complexity Low_complexity 1 145 0 * 299 315 6 11 chr3 45762576 45762754 -181761824 + CT-rich Low_complexity Low_complexity 3 179 0 * 346 265 24 0 chr3 45763971 45764054 -181760524 - L2 LINE L2 0 3313 3229 181 167 28 0 chr3 45764300 45764336 -181760242 + L2 LINE L2 2248 2284 -1030 1508 174 20 24 chr3 45764519 45764674 -181759904 - AluJb SINE Alu -19 293 139 234 0 0 0 chr3 45764674 45764700 -181759878 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1975 100 44 4 chr3 45764700 45764970 -181759608 - AluY SINE Alu -30 281 1 1508 174 20 24 chr3 45764970 45765107 -181759471 - AluJb SINE Alu -171 141 1 2249 99 7 3 chr3 45765231 45765533 -181759045 + AluSg SINE Alu 1 303 -7 282 200 23 43 chr3 45765546 45765653 -181758925 + L1P4 LINE L1 5758 5869 -297 2250 112 3 0 chr3 45765658 45765954 -181758624 - AluSx SINE Alu -15 297 1 26 0 0 0 chr3 45765998 45766024 -181758554 + AT_rich Low_complexity Low_complexity 1 26 0 2374 97 3 0 chr3 45766213 45766512 -181758066 - AluSg SINE Alu -9 301 2 984 232 16 28 chr3 45766754 45767008 -181757570 + MIR SINE MIR 6 256 -6 1102 147 0 6 chr3 45767359 45767516 -181757062 - AluSq SINE Alu -20 293 138 1375 181 86 27 chr3 45767648 45767940 -181756638 + AluJo SINE Alu 1 309 -3 2199 129 0 13 chr3 45767943 45768260 -181756318 + AluSq SINE Alu 1 313 0 671 164 55 0 chr3 45768263 45768373 -181756205 - FLAM_A SINE Alu -17 116 1 715 303 115 13 chr3 45768521 45768904 -181755674 - LTR16A LTR ERVL -10 440 19 226 272 48 64 chr3 45768967 45769092 -181755486 + MIR3 SINE MIR 36 158 -50 441 259 74 104 chr3 45769364 45769634 -181754944 - L1MC4 LINE L1 -47 7995 7734 2300 116 116 22 chr3 45769638 45769928 -181754650 - MER65A LTR ERV1 0 445 105 2571 102 11 6 chr3 45769928 45770290 -181754288 + THE1B LTR MaLR 1 364 0 2300 116 116 22 chr3 45770290 45770406 -181754172 - MER65A LTR ERV1 -340 105 1 1016 264 112 37 chr3 45770410 45770900 -181753678 - L1MC4 LINE L1 -173 7672 7126 229 232 0 0 chr3 45770961 45771017 -181753561 + L1ME LINE L1 5771 5826 -340 1946 191 85 86 chr3 45771202 45771921 -181752657 - L1MC5 LINE L1 -518 7443 6726 390 346 67 14 chr3 45772126 45772334 -181752244 - MIR SINE MIR -19 243 25 1453 152 0 5 chr3 45773726 45773937 -181750641 - AluJo SINE Alu -17 295 86 1856 131 159 31 chr3 45774002 45774385 -181750193 - MSTB1 LTR MaLR 0 432 1 264 237 0 13 chr3 45774418 45774494 -181750084 + LTR33A LTR ERVL 445 519 -4 1510 126 39 0 chr3 45774604 45774834 -181749744 - AluJb SINE Alu -57 255 17 319 195 24 12 chr3 45776044 45776126 -181748452 + L1MEd LINE L1 101 183 -5936 10477 54 17 60 chr3 45776403 45777846 -181746732 + SVA Other Other 4 1385 -1 189 94 0 0 chr3 45777849 45777881 -181746697 + (CAAAAA)n Simple_repeat Simple_repeat 2 33 0 1006 269 137 3 chr3 45777996 45778331 -181746247 - LTR40c LTR ERVL -5 460 81 469 283 131 36 chr3 45778389 45779084 -181745494 + L1MEd LINE L1 642 1464 -4846 188 261 29 14 chr3 45779212 45779281 -181745297 - L2 LINE L2 -1265 2049 1980 1602 160 48 4 chr3 45779582 45779694 -181744884 + AluJb SINE Alu 15 121 -191 477 0 0 0 chr3 45779694 45779747 -181744831 + (CA)n Simple_repeat Simple_repeat 2 54 0 1602 160 48 4 chr3 45779747 45779902 -181744676 + AluJb SINE Alu 121 294 -18 2173 125 7 0 chr3 45779930 45780234 -181744344 - AluSx SINE Alu -6 306 1 488 72 0 0 chr3 45780284 45780353 -181744225 + MER41A LTR ERV1 400 468 -86 319 251 192 0 chr3 45780404 45780588 -181743990 + L1P2 LINE L1 5257 5474 -680 250 245 84 97 chr3 45780689 45780833 -181743745 + L1ME3 LINE L1 5689 5830 -332 2111 113 3 17 chr3 45780833 45781133 -181743445 + AluSx SINE Alu 1 296 -16 250 245 84 97 chr3 45781133 45781225 -181743353 + L1ME3 LINE L1 5830 5922 -240 2213 79 48 0 chr3 45781437 45781727 -181742851 - AluY SINE Alu -7 304 1 256 224 7 112 chr3 45782187 45782274 -181742304 - HAL1 LINE L1 0 2507 2439 1468 122 43 12 chr3 45782274 45782529 -181742049 + L1MC1 LINE L1 6071 6333 0 256 224 7 112 chr3 45782529 45782584 -181741994 - HAL1 LINE L1 -68 2439 2380 24 53 0 0 chr3 45782609 45782647 -181741931 + AT_rich Low_complexity Low_complexity 1 38 0 514 233 82 6 chr3 45782940 45783099 -181741479 - MLT1H LTR MaLR -378 171 1 2171 94 39 3 chr3 45784318 45784604 -181739974 - AluSp SINE Alu -17 296 1 1838 122 28 28 chr3 45784783 45785097 -181739481 - AluSx SINE Alu 0 314 1 1662 180 9 31 chr3 45785274 45785591 -181738987 - AluJo SINE Alu -2 310 1 1034 187 11 6 chr3 45786918 45787100 -181737478 + AluJo SINE Alu 125 307 -5 323 253 49 122 chr3 45787109 45787413 -181737165 - L1ME4a LINE L1 -56 6065 5784 10651 56 10 55 chr3 45787619 45789069 -181735509 - SVA Other Other -1 1385 1 1171 242 60 87 chr3 45789072 45789753 -181734825 - L1MC5 LINE L1 -48 7913 7251 352 168 30 90 chr3 45789830 45790004 -181734574 - L1MC5 LINE L1 -739 7222 7098 362 338 73 0 chr3 45790013 45790149 -181734429 - L1MC4a LINE L1 -1740 6068 5923 204 286 39 39 chr3 45790534 45790611 -181733967 + L3 LINE CR1 1078 1154 -423 710 252 63 0 chr3 45790832 45791038 -181733540 + HAL1 LINE L1 1592 1810 -697 1308 258 98 69 chr3 45791053 45791393 -181733185 - MLT1G LTR MaLR -2 588 259 2140 143 0 3 chr3 45791393 45791694 -181732884 - AluSx SINE Alu -12 300 1 1308 258 98 69 chr3 45791694 45791860 -181732718 - MLT1G LTR MaLR -331 259 62 2017 136 7 23 chr3 45791860 45792169 -181732409 - AluJo SINE Alu -8 304 1 1308 258 98 69 chr3 45792169 45792224 -181732354 - MLT1G LTR MaLR -528 62 10 1439 255 93 26 chr3 45792251 45792874 -181731704 + HAL1 LINE L1 1841 2505 -2 393 272 85 23 chr3 45792887 45793124 -181731454 + L1 LINE L1 3498 3770 -2376 244 275 87 0 chr3 45794005 45794074 -181730504 + MIR SINE MIR 108 182 -80 3362 73 25 5 chr3 45794136 45794575 -181730003 - LTR7 LTR ERV1 -2 448 1 2845 80 12 12 chr3 45794575 45795000 -181729578 - HERVH LTR ERV1 0 7713 7289 2513 63 0 0 chr3 45794985 45795316 -181729262 - HERVH LTR ERV1 -3148 4565 4235 * 214 341 12 12 chr3 45797085 45797170 -181727408 + MIR SINE MIR 31 115 -93 379 209 146 70 chr3 45797249 45797350 -181727228 + Charlie8 DNA MER1_type 1 120 -221 2417 88 3 0 chr3 45797350 45797647 -181726931 + AluSx SINE Alu 1 298 -14 379 209 146 70 chr3 45797647 45797703 -181726875 + Charlie8 DNA MER1_type 120 170 -171 298 228 50 33 chr3 45797836 45798178 -181726400 + (CACCAT)n Simple_repeat Simple_repeat 1 348 0 205 379 0 0 chr3 45798640 45798706 -181725872 + L2 LINE L2 3205 3270 -2 595 268 55 6 chr3 45799759 45799923 -181724655 - MER5B DNA MER1_type -6 172 1 1432 211 3 56 chr3 45800458 45800781 -181723797 + AluJo SINE Alu 1 306 -6 1019 316 92 4 chr3 45800895 45801354 -181723224 - L1MC4a LINE L1 -1834 5974 5476 464 200 34 97 chr3 45801386 45801561 -181723017 - L1MC5 LINE L1 -60 7901 7738 * 3498 151 48 72 chr3 45801538 45801757 -181722821 + L1MA8 LINE L1 4922 5145 -1146 1849 141 46 23 chr3 45801757 45802062 -181722516 + AluJo SINE Alu 1 312 0 3498 151 48 72 chr3 45802062 45802586 -181721992 + L1MA8 LINE L1 5145 5684 -607 434 129 0 0 chr3 45802586 45802648 -181721930 - FRAM SINE Alu -56 120 59 3498 151 48 72 chr3 45802648 45802968 -181721610 + L1MA8 LINE L1 5684 6010 -281 417 264 14 14 chr3 45803012 45803156 -181721422 - L1MC4a LINE L1 -2338 5470 5327 450 176 0 0 chr3 45803852 45803937 -181720641 + CT-rich Low_complexity Low_complexity 3 87 0 665 229 154 0 chr3 45804486 45804661 -181719917 - MER3 DNA MER1_type -7 202 1 298 275 141 20 chr3 45809798 45809947 -181714631 - MIR3 SINE MIR -22 186 20 244 208 148 10 chr3 45811128 45811229 -181713349 - L1ME4a LINE L1 -33 6088 5974 247 284 43 56 chr3 45811302 45811464 -181713114 + L1ME LINE L1 5635 5794 -376 471 227 23 47 chr3 45811572 45811744 -181712834 - L1MC5 LINE L1 -30 7931 7764 1783 103 5 0 chr3 45811758 45811982 -181712596 + AluSg SINE Alu 2 226 -84 313 324 15 6 chr3 45812171 45812323 -181712255 - L1ME4a LINE L1 -544 5577 5450 266 253 44 33 chr3 45812512 45812603 -181711975 - MLT1K LTR MaLR 0 588 497 395 267 81 47 chr3 45812954 45813126 -181711452 - HAL1 LINE L1 -1420 1087 910 1272 210 19 0 chr3 45813571 45813838 -181710740 - L1PB4 LINE L1 0 6156 5885 3043 166 58 16 chr3 45814151 45814716 -181709862 - Tigger1 DNA MER2_type -1829 589 1 2198 104 0 0 chr3 45814757 45815036 -181709542 + AluSx SINE Alu 1 279 -33 4456 226 42 31 chr3 45815062 45816814 -181707764 - L1MEc LINE L1 -2691 3735 2006 773 216 21 110 chr3 45816879 45817062 -181707516 - MLT2C1 LTR ERVL -51 346 197 2299 122 0 0 chr3 45817062 45817366 -181707212 + AluSx SINE Alu 1 304 -8 773 216 21 110 chr3 45817366 45817473 -181707105 - MLT2C1 LTR ERVL -200 197 82 860 236 141 19 chr3 45817482 45817745 -181706833 + L1MCb LINE L1 2 296 -5749 325 164 29 87 chr3 45817735 45817839 -181706739 + L1MCb LINE L1 523 620 -5944 * 935 227 16 20 chr3 45817915 45818162 -181706416 - L1M4 LINE L1 -1744 4402 4157 429 179 0 0 chr3 45821356 45821440 -181703138 + (CA)n Simple_repeat Simple_repeat 2 85 0 300 197 0 42 chr3 45821440 45821511 -181703067 + L1MD2 LINE L1 6096 6163 -196 * 318 222 0 42 chr3 45821486 45821558 -181703020 - L1MEc LINE L1 -4363 2063 1995 192 200 0 0 chr3 45821558 45821603 -181702975 + (CA)n Simple_repeat Simple_repeat 2 46 0 351 246 0 0 chr3 45821605 45821674 -181702904 - MER63 DNA MER1_type -4 1058 990 315 214 65 54 chr3 45823687 45823877 -181700701 + L1P5 LINE L1 5319 5437 -714 894 142 0 0 chr3 45824009 45824314 -181700264 + AluJb SINE Alu 2 306 0 843 164 0 15 chr3 45824591 45824725 -181699853 + FLAM_C SINE Alu 2 133 0 181 288 68 0 chr3 45825907 45825980 -181698598 - L2 LINE L2 -56 3257 3180 211 317 98 41 chr3 45826822 45826945 -181697633 - L2 LINE L2 -2733 581 452 191 231 0 0 chr3 45829484 45829523 -181695055 - L2 LINE L2 -26 3246 3208 1784 160 32 11 chr3 45830149 45830431 -181694147 - AluJo SINE Alu -20 292 5 388 234 78 43 chr3 45830437 45830578 -181694000 - MER5A DNA MER1_type -25 164 19 704 165 13 2 chr3 45834007 45834159 -181690419 - Ricksha_b DNA DNA -13 1633 1535 772 186 8 0 chr3 45834159 45834283 -181690295 + FLAM_A SINE Alu 1 125 -17 5962 119 77 41 chr3 45834287 45834323 -181690255 - Ricksha_b DNA DNA -1705 1149 1116 2081 114 0 36 chr3 45834323 45834629 -181689949 + AluSg SINE Alu 1 295 -15 5962 119 77 41 chr3 45834629 45834928 -181689650 - Ricksha_b DNA DNA -1738 1116 829 1913 146 3 3 chr3 45834928 45835216 -181689362 + AluJb SINE Alu 1 288 -24 5962 119 77 41 chr3 45835216 45835899 -181688679 - Ricksha_b DNA DNA -2025 829 85 661 81 101 0 chr3 45835899 45835998 -181688580 - HY1 scRNA scRNA -3 109 1 5962 119 77 41 chr3 45835998 45836087 -181688491 - Ricksha_b DNA DNA -2769 85 1 2441 97 0 0 chr3 45839195 45839495 -181685083 - AluY SINE Alu -11 300 1 1858 98 127 0 chr3 45840399 45840675 -181683903 + AluY SINE Alu 1 311 0 195 333 0 14 chr3 45840817 45840886 -181683692 - MIR SINE MIR -1 261 194 456 242 186 43 chr3 45840942 45841103 -181683475 - MIR SINE MIR -64 198 15 267 244 341 0 chr3 45843254 45843377 -181681201 + MER5B DNA MER1_type 14 178 0 3248 185 59 50 chr3 45845087 45845829 -181678749 + LTR5 LTR ERVK 1 749 -220 4292 168 16 98 chr3 45845844 45846900 -181677678 - LTR5 LTR ERVK 0 969 1 547 137 21 11 chr3 45846988 45847083 -181677495 + LTR5 LTR ERVK 874 969 0 293 333 160 0 chr3 45848368 45848524 -181676054 + L2 LINE L2 3092 3272 0 584 246 42 0 chr3 45850683 45850825 -181673753 + MIR SINE MIR 80 227 -35 297 299 0 0 chr3 45852872 45852959 -181671619 + (CA)n Simple_repeat Simple_repeat 1 87 0 21 0 0 0 chr3 45853593 45853614 -181670964 + AT_rich Low_complexity Low_complexity 1 21 0 3053 160 12 51 chr3 45854856 45855013 -181669565 + L1MB3 LINE L1 5219 5381 -802 1878 169 19 3 chr3 45855013 45855320 -181669258 + AluJo SINE Alu 1 312 0 3053 160 12 51 chr3 45855320 45855459 -181669119 + L1MB3 LINE L1 5381 5524 -659 315 0 0 0 chr3 45855459 45855494 -181669084 + (TA)n Simple_repeat Simple_repeat 2 36 0 3053 160 12 51 chr3 45855494 45855887 -181668691 + L1MB3 LINE L1 5524 5888 -295 2095 122 39 0 chr3 45855887 45856173 -181668405 + AluSx SINE Alu 1 297 -15 5870 193 188 34 chr3 45856300 45858160 -181666418 + L1MDa LINE L1 15 2160 -4380 1056 177 58 8 chr3 45858356 45858599 -181665979 + L1MDa LINE L1 2164 2418 -4122 677 164 79 79 chr3 45858602 45858725 -181665853 + L1MD2 LINE L1 5929 6054 -305 2304 107 0 3 chr3 45858725 45859023 -181665555 + AluSg SINE Alu 1 297 -13 677 164 79 79 chr3 45859023 45859113 -181665465 + L1MD2 LINE L1 6053 6142 -217 702 209 13 0 chr3 45859116 45859269 -181665309 + L1MD2 LINE L1 6195 6349 -10 244 117 78 39 chr3 45859275 45859352 -181665226 + (TTTAA)n Simple_repeat Simple_repeat 1 80 0 1712 173 0 33 chr3 45859365 45859665 -181664913 - AluJb SINE Alu -22 290 1 65 25 0 0 chr3 45859701 45859780 -181664798 + AT_rich Low_complexity Low_complexity 1 79 0 1363 130 14 143 chr3 45860847 45861217 -181663361 - MER33 DNA MER1_type 0 324 3 435 226 118 0 chr3 45861235 45861328 -181663250 + MER5A DNA MER1_type 9 112 -77 267 265 36 0 chr3 45861755 45861835 -181662743 + MLT1K LTR MaLR 465 547 -41 1356 299 47 2 chr3 45861835 45862257 -181662321 + LTR33 LTR ERVL 1 441 -80 339 276 0 11 chr3 45862288 45862375 -181662203 + LTR33 LTR ERVL 92 177 -344 * 378 147 13 13 chr3 45862374 45862449 -181662129 + LTR33 LTR ERVL 442 516 -5 255 224 0 128 chr3 45862478 45862603 -181661975 + MLT1H LTR MaLR 425 533 -16 743 224 91 102 chr3 45862634 45862907 -181661671 + MLT1J LTR MaLR 134 404 -107 2196 134 0 6 chr3 45862907 45863221 -181661357 - AluSx SINE Alu 0 312 1 743 224 91 102 chr3 45863221 45863309 -181661269 + MLT1J LTR MaLR 404 491 -20 209 231 19 0 chr3 45864888 45864940 -181659638 - MIR SINE MIR -15 247 195 322 262 172 0 chr3 45864941 45865063 -181659515 + MIR SINE MIR 90 232 -30 2141 109 7 0 chr3 45866214 45866507 -181658071 - AluSx SINE Alu -17 295 1 952 251 93 13 chr3 45866541 45866919 -181657659 - L1ME LINE L1 -345 5817 5410 374 253 119 51 chr3 45867094 45867199 -181657379 - L1MC4a LINE L1 -235 5943 5826 1846 176 13 0 chr3 45867199 45867500 -181657078 - AluJb SINE Alu -7 305 1 374 253 119 51 chr3 45867500 45867581 -181656997 - L1MC4a LINE L1 -352 5826 5752 958 268 119 22 chr3 45867705 45868115 -181656463 + MLT1J2 LTR MaLR 1 450 0 313 340 19 0 chr3 45868166 45868269 -181656309 - L1MC4a LINE L1 -2043 5765 5661 1072 276 84 19 chr3 45869220 45869589 -181654989 + LTR16C LTR ERVL 99 491 0 2403 120 46 46 chr3 45869855 45870289 -181654289 - Tigger2a DNA MER2_type 0 434 1 388 299 47 24 chr3 45870353 45870480 -181654098 + L2 LINE L2 3162 3291 -22 315 307 82 56 chr3 45870804 45871110 -181653468 - L1MC5 LINE L1 -189 7772 7459 413 149 31 64 chr3 45871123 45871451 -181653127 + (TA)n Simple_repeat Simple_repeat 1 317 0 394 140 27 70 chr3 45871562 45871948 -181652630 + (TA)n Simple_repeat Simple_repeat 1 369 0 394 140 27 70 chr3 45871962 45872148 -181652430 + (TA)n Simple_repeat Simple_repeat 2 179 0 394 140 27 70 chr3 45872162 45872348 -181652230 + (TA)n Simple_repeat Simple_repeat 2 179 0 394 140 27 70 chr3 45872362 45872668 -181651910 + (TA)n Simple_repeat Simple_repeat 1 292 0 394 140 27 70 chr3 45872682 45872868 -181651710 + (TA)n Simple_repeat Simple_repeat 2 179 0 394 140 27 70 chr3 45872882 45873068 -181651510 + (TA)n Simple_repeat Simple_repeat 2 179 0 394 140 27 70 chr3 45873082 45873268 -181651310 + (TA)n Simple_repeat Simple_repeat 2 179 0 394 140 27 70 chr3 45873282 45873468 -181651110 + (TA)n Simple_repeat Simple_repeat 2 179 0 394 140 27 70 chr3 45873482 45873668 -181650910 + (TA)n Simple_repeat Simple_repeat 2 179 0 394 140 27 70 chr3 45873682 45873868 -181650710 + (TA)n Simple_repeat Simple_repeat 2 179 0 302 294 93 65 chr3 45873873 45873993 -181650585 - L1MEd LINE L1 -4997 1122 1007 218 101 51 56 chr3 45873993 45874171 -181650407 + (TA)n Simple_repeat Simple_repeat 2 178 0 302 294 93 65 chr3 45874171 45874196 -181650382 - L1MEd LINE L1 -5112 1007 791 21 71 0 0 chr3 45874174 45874216 -181650362 + AT_rich Low_complexity Low_complexity 1 42 0 * 345 146 41 53 chr3 45874222 45874393 -181650185 + (TA)n Simple_repeat Simple_repeat 2 170 0 2266 110 0 3 chr3 45874394 45874694 -181649884 - AluSq SINE Alu -12 301 3 233 73 0 24 chr3 45874700 45874741 -181649837 + (CAAAA)n Simple_repeat Simple_repeat 2 41 0 408 228 110 47 chr3 45875212 45875339 -181649239 - LTR39 LTR ERV1 0 783 649 21 36 0 0 chr3 45875339 45875367 -181649211 + AT_rich Low_complexity Low_complexity 1 28 0 3816 144 33 8 chr3 45875432 45876042 -181648536 - LTR39 LTR ERV1 -158 625 1 1772 100 74 4 chr3 45876068 45876338 -181648240 - AluSx SINE Alu -23 289 1 184 69 0 35 chr3 45877299 45877328 -181647250 + L2 LINE L2 2858 2885 -387 180 0 0 0 chr3 45877658 45877678 -181646900 + (CGG)n Simple_repeat Simple_repeat 3 22 0 2501 63 3 0 chr3 45878394 45878697 -181645881 + AluSg SINE Alu 1 304 -6 365 278 82 36 chr3 45878782 45878976 -181645602 - L2 LINE L2 -219 3053 2851 1385 208 39 6 chr3 45880065 45880377 -181644201 - L1MB7 LINE L1 -2 6182 5861 1927 174 36 6 chr3 45880381 45880743 -181643835 - L1MB7 LINE L1 -2 6182 5810 1933 197 55 56 chr3 45880746 45881175 -181643403 - L1MB7 LINE L1 -418 5760 5332 2023 121 7 0 chr3 45881175 45881486 -181643092 - AluSx SINE Alu 0 313 1 1933 197 55 56 chr3 45881486 45881604 -181642974 - L1MB7 LINE L1 -846 5332 5215 1698 175 29 19 chr3 45881604 45881913 -181642665 - AluJb SINE Alu 0 312 1 2246 108 0 3 chr3 45881921 45882227 -181642351 - AluSx SINE Alu -7 305 1 1933 197 55 56 chr3 45882227 45882457 -181642121 - L1MB7 LINE L1 -970 5208 4960 438 320 24 0 chr3 45882459 45882584 -181641994 - MIR SINE MIR -57 151 24 1462 141 57 32 chr3 45882675 45882958 -181641620 - AluJo SINE Alu -22 290 1 568 299 36 26 chr3 45883750 45883944 -181640634 + MIR SINE MIR 19 214 -48 572 286 103 62 chr3 45884656 45885121 -181639457 - MLT1J LTR MaLR 0 511 28 396 286 78 69 chr3 45885256 45885501 -181639077 + MIR SINE MIR 9 255 -7 1597 221 141 53 chr3 45885608 45886184 -181638394 - L2 LINE L2 0 3313 2615 2163 111 7 0 chr3 45886184 45886481 -181638097 + AluSx SINE Alu 1 299 -13 1597 221 141 53 chr3 45886481 45886741 -181637837 - L2 LINE L2 -698 2615 2379 1803 154 21 3 chr3 45887197 45887483 -181637095 - AluJb SINE Alu -21 291 1 261 276 11 11 chr3 45887997 45888084 -181636494 + MER112 DNA MER1_type 79 165 -95 1891 165 0 10 chr3 45889459 45889768 -181634810 - AluJb SINE Alu -4 308 3 1932 149 0 7 chr3 45889844 45890133 -181634445 - AluSx SINE Alu -25 287 1 1607 161 3 58 chr3 45890327 45890485 -181634093 - AluSx SINE Alu -18 294 160 207 0 0 0 chr3 45890485 45890508 -181634070 + (TA)n Simple_repeat Simple_repeat 1 23 0 1607 161 3 58 chr3 45890508 45890660 -181633918 - AluSx SINE Alu -152 160 1 1694 168 7 20 chr3 45890740 45890911 -181633667 - AluJo SINE Alu -6 306 139 1954 153 7 0 chr3 45890911 45891211 -181633367 - AluJb SINE Alu -10 302 1 1694 168 7 20 chr3 45891211 45891337 -181633241 - AluJo SINE Alu -173 139 13 836 115 108 0 chr3 45891350 45891489 -181633089 - L1MB7 LINE L1 -8 6176 6023 1009 178 0 84 chr3 45891489 45891691 -181632887 + MER8 DNA MER2_type 2 186 -53 1981 141 3 10 chr3 45891691 45891989 -181632589 - AluSc SINE Alu -13 296 1 868 144 8 0 chr3 45891991 45892123 -181632455 - AluSq/x SINE Alu -178 134 2 324 186 68 0 chr3 45892123 45892182 -181632396 - Tigger2a DNA MER2_type -371 63 1 751 214 50 15 chr3 45892182 45892383 -181632195 - L1MB7 LINE L1 -159 6025 5818 2047 143 3 10 chr3 45892407 45892715 -181631863 - AluJb SINE Alu -6 306 1 1200 134 87 35 chr3 45892718 45892949 -181631629 - MLT1D LTR MaLR -262 243 1 2827 184 10 79 chr3 45892949 45893236 -181631342 - L1MDb LINE L1 -5018 1525 1220 2191 98 20 7 chr3 45893236 45893531 -181631047 - AluSg SINE Alu -11 299 1 2827 184 10 79 chr3 45893531 45893766 -181630812 - L1MDb LINE L1 -5323 1220 1064 793 185 0 15 chr3 45893766 45893901 -181630677 - FLAM_A SINE Alu 0 133 1 2827 184 10 79 chr3 45893901 45894100 -181630478 - L1MDb LINE L1 -5479 1064 853 890 269 3 77 chr3 45894310 45894660 -181629918 - L1MDb LINE L1 -6196 344 21 200 233 0 0 chr3 45894838 45894881 -181629697 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 291 265 118 35 chr3 45895268 45895438 -181629140 - L1MC4a LINE L1 -1921 5887 5704 182 290 32 16 chr3 45896670 45896732 -181627846 - MIR3 SINE MIR -133 75 13 799 105 0 0 chr3 45896789 45896894 -181627684 - AluSg/x SINE Alu -22 290 186 428 150 0 0 chr3 45896908 45896968 -181627610 + Alu SINE Alu 234 293 -19 1814 159 7 13 chr3 45897138 45897439 -181627139 + AluSx SINE Alu 1 299 -13 1894 159 3 16 chr3 45897498 45897813 -181626765 + AluJb SINE Alu 2 312 0 4215 157 40 6 chr3 45898141 45898848 -181625730 - L1MB7 LINE L1 0 6184 5454 323 189 158 0 chr3 45899071 45899166 -181625412 + MER112 DNA MER1_type 145 254 -6 21 0 0 0 chr3 45899570 45899591 -181624987 + AT_rich Low_complexity Low_complexity 1 21 0 928 122 0 23 chr3 45899591 45899722 -181624856 - FLAM_C SINE Alu -5 128 1 557 231 67 0 chr3 45900196 45900330 -181624248 - L1MD3 LINE L1 -10 7985 7843 243 234 175 124 chr3 45900730 45900867 -181623711 + L2 LINE L2 3169 3312 -1 409 261 200 8 chr3 45901508 45901638 -181622940 - L2 LINE L2 -1 3271 3117 459 288 52 97 chr3 45901681 45901948 -181622630 - L2 LINE L2 -92 3180 2926 999 245 94 37 chr3 45902857 45902891 -181621687 - L1MC4 LINE L1 -398 7644 7613 1626 145 10 71 chr3 45902891 45903201 -181621377 - AluJo SINE Alu -21 291 1 999 245 94 37 chr3 45903201 45904387 -181620191 - L1MC4 LINE L1 -429 7613 6518 471 289 60 30 chr3 45904844 45905045 -181619533 + MIR SINE MIR 54 260 -2 24 0 0 0 chr3 45905450 45905474 -181619104 + AT_rich Low_complexity Low_complexity 1 24 0 1505 179 47 20 chr3 45906103 45906400 -181618178 + AluJo SINE Alu 1 305 -7 21 0 0 0 chr3 45906605 45906626 -181617952 + AT_rich Low_complexity Low_complexity 1 21 0 301 278 56 32 chr3 45907807 45907933 -181616645 - MER5A DNA MER1_type -18 171 43 * 384 308 43 0 chr3 45907842 45907959 -181616619 + MER5A DNA MER1_type 63 184 -5 611 280 68 70 chr3 45909079 45909551 -181615027 - HAL1 LINE L1 -2025 482 12 359 258 180 9 chr3 45910875 45911092 -181613486 - L1ME4a LINE L1 -55 6066 5813 1582 145 157 4 chr3 45911102 45911364 -181613214 - AluJo SINE Alu 0 302 1 864 289 42 25 chr3 45911407 45911691 -181612887 - L1MDb LINE L1 -5499 1148 860 278 294 39 10 chr3 45911718 45911820 -181612758 - L1MDb LINE L1 -5643 1004 900 687 230 15 158 chr3 45912049 45912384 -181612194 - L1MDb LINE L1 -6200 444 158 21 0 0 0 chr3 45912610 45912631 -181611947 + AT_rich Low_complexity Low_complexity 1 21 0 420 256 133 55 chr3 45912648 45912910 -181611668 - L1ME4a LINE L1 -513 5608 5324 753 215 0 0 chr3 45912910 45913040 -181611538 - FLAM_A SINE Alu -3 130 1 420 256 133 55 chr3 45913040 45913112 -181611466 - L1ME4a LINE L1 -797 5324 5259 1778 141 20 46 chr3 45913121 45913264 -181611314 + AluJo SINE Alu 1 146 -166 2319 87 7 0 chr3 45913264 45913553 -181611025 + AluY SINE Alu 1 291 -20 1778 141 20 46 chr3 45913553 45913714 -181610864 + AluJo SINE Alu 146 297 -15 259 319 179 13 chr3 45913843 45914144 -181610434 - L2 LINE L2 -2313 1001 651 1123 154 34 68 chr3 45914221 45914379 -181610199 - AluJo SINE Alu -14 298 149 4360 168 54 58 chr3 45914379 45915337 -181609241 + LTR13 LTR ERVK 1 954 0 1123 154 34 68 chr3 45915337 45915412 -181609166 - AluJo SINE Alu -163 149 73 11546 143 42 2 chr3 45915414 45917196 -181607382 - L1M1 LINE L1 -5687 1878 27 326 249 99 39 chr3 45917595 45917776 -181606802 - L1MDb LINE L1 -6304 238 47 303 276 23 11 chr3 45918065 45918152 -181606426 - MARNA DNA Mariner -362 224 137 1011 249 49 4 chr3 45918634 45918879 -181605699 + MIR SINE MIR 7 262 0 973 243 87 0 chr3 45918890 45919096 -181605482 - MER58A DNA MER1_type 0 224 1 322 292 139 42 chr3 45919112 45919256 -181605322 - MLT1J LTR MaLR -64 447 290 871 128 22 84 chr3 45919339 45919518 -181605060 + MER20 DNA MER1_type 38 205 -14 658 215 7 14 chr3 45919533 45919677 -181604901 - MLT1J LTR MaLR -300 211 69 365 179 32 24 chr3 45919689 45919812 -181604766 + CT-rich Low_complexity Low_complexity 1 124 0 326 167 26 39 chr3 45920136 45920214 -181604364 - Tigger5 DNA MER2_type 0 2323 2247 2414 94 0 0 chr3 45920456 45920763 -181603815 + AluY SINE Alu 1 307 -4 291 190 0 0 chr3 45920795 45920853 -181603725 + (TG)n Simple_repeat Simple_repeat 2 59 0 981 189 6 11 chr3 45921078 45921253 -181603325 - AluJb SINE Alu -32 280 107 230 114 0 68 chr3 45921259 45921303 -181603275 - MER5B DNA MER1_type -110 68 28 783 121 0 0 chr3 45921303 45921402 -181603176 - AluJb SINE Alu -212 100 2 413 145 0 0 chr3 45921404 45921473 -181603105 - L1MCa LINE L1 -4106 2320 2252 2288 55 42 7 chr3 45921473 45921762 -181602816 - AluY SINE Alu -12 299 1 1034 126 74 30 chr3 45921762 45922036 -181602542 - L1MCa LINE L1 -4591 1835 1469 2722 209 57 23 chr3 45922051 45922698 -181601880 - L1MCa LINE L1 -5727 699 31 1590 237 53 72 chr3 45922714 45923186 -181601392 + HERVL40 LTR ERVL 2098 2560 -2970 450 298 85 35 chr3 45923429 45923748 -181600830 - L1MEd LINE L1 -5750 369 35 870 208 37 2 chr3 45923838 45924011 -181600567 - MER5B DNA MER1_type -4 174 8 2661 200 6 12 chr3 45925051 45925565 -181599013 + L1MC3 LINE L1 7260 7770 -15 302 250 150 7 chr3 45925747 45925895 -181598683 - L1ME LINE L1 -286 5880 5713 185 314 66 74 chr3 45926129 45926250 -181598328 - L2 LINE L2 -19 3253 3134 270 231 87 39 chr3 45927075 45927179 -181597399 - L1ME LINE L1 -2015 5793 5685 864 257 149 31 chr3 45928650 45929344 -181595234 + L1ME LINE L1 5035 5802 -368 1192 128 14 24 chr3 45929350 45929592 -181594986 - AluSg/x SINE Alu 0 315 76 4085 135 23 69 chr3 45929592 45930632 -181593946 - L1MB3 LINE L1 -156 6027 5024 189 304 96 26 chr3 45930645 45930760 -181593818 + L2 LINE L2 3120 3242 -71 718 216 60 50 chr3 45931294 45931493 -181593085 - MIR SINE MIR 0 262 62 405 0 0 0 chr3 45931620 45931665 -181592913 + (ATG)n Simple_repeat Simple_repeat 2 46 0 1776 175 3 0 chr3 45931665 45931950 -181592628 - AluJo SINE Alu -26 286 1 260 267 0 27 chr3 45932780 45932855 -181591723 - MIR SINE MIR -132 130 58 770 189 0 0 chr3 45933123 45933255 -181591323 - FLAM_C SINE Alu -1 132 1 243 318 77 82 chr3 45933804 45933941 -181590637 + L2 LINE L2 2225 2362 -952 2320 196 66 4 chr3 45933941 45934426 -181590152 - LTR53 LTR ERVL 0 519 5 243 318 77 82 chr3 45934426 45934458 -181590120 + L2 LINE L2 2362 2393 -921 1632 132 58 44 chr3 45934970 45935265 -181589313 - AluJo SINE Alu -9 303 5 2169 102 7 26 chr3 45935281 45935586 -181588992 - AluSp SINE Alu -14 299 1 1743 165 83 13 chr3 45935827 45936202 -181588376 - L1MB3 LINE L1 0 6183 5783 517 346 27 23 chr3 45937545 45937805 -181586773 + L1MEd LINE L1 137 397 -5722 621 289 98 40 chr3 45937809 45938287 -181586291 + L1MEd LINE L1 446 951 -5168 314 185 0 0 chr3 45938287 45938341 -181586237 + MLT1F1 LTR MaLR 71 124 -443 2550 170 65 29 chr3 45938342 45938895 -181585683 + L1MD3 LINE L1 7404 7976 -19 987 235 35 22 chr3 45939040 45939270 -181585308 - MIR SINE MIR -25 237 5 299 191 64 21 chr3 45939270 45939364 -181585214 + L1MEd LINE L1 1020 1117 -5002 360 0 0 0 chr3 45939384 45939424 -181585154 + (CA)n Simple_repeat Simple_repeat 1 40 0 393 184 59 58 chr3 45939433 45939578 -181585000 + L1M3d LINE L1 1271 1760 -4543 842 195 19 13 chr3 45939761 45939920 -181584658 - Tigger3(Golem) DNA MER2_type 0 3029 2870 587 213 63 86 chr3 45940292 45940402 -181584176 - MER5B DNA MER1_type -3 175 68 1995 115 7 11 chr3 45940402 45940704 -181583874 - AluSg SINE Alu 0 305 5 587 213 63 86 chr3 45940704 45940766 -181583812 - MER5B DNA MER1_type -110 68 6 182 300 83 0 chr3 45940787 45940847 -181583731 - MIR SINE MIR -138 124 60 36 0 0 0 chr3 45941193 45941229 -181583349 + AT_rich Low_complexity Low_complexity 1 36 0 182 150 100 0 chr3 45942403 45942443 -181582135 - L2 LINE L2 0 3313 3270 237 272 24 80 chr3 45943127 45943252 -181581326 + MER5B DNA MER1_type 1 118 -60 585 249 245 12 chr3 45943286 45943543 -181581035 + L2 LINE L2 2984 3300 -13 2107 141 0 7 chr3 45943662 45943961 -181580617 + AluSx SINE Alu 1 297 -15 1357 215 0 12 chr3 45943985 45944241 -181580337 + AluJb SINE Alu 11 263 -49 2516 258 93 26 chr3 45944241 45944317 -181580261 + HAL1 LINE L1 28 98 -2409 1919 147 3 26 chr3 45944317 45944630 -181579948 + AluJb SINE Alu 7 312 0 2516 258 93 26 chr3 45944630 45945460 -181579118 + HAL1 LINE L1 98 994 -1513 1851 145 10 7 chr3 45945469 45945766 -181578812 + AluJo SINE Alu 2 299 -13 4858 171 25 11 chr3 45945814 45947090 -181577488 + L1MB8 LINE L1 4868 6156 -22 1440 269 86 12 chr3 45947120 45947678 -181576900 + HAL1 LINE L1 1052 1650 -857 748 268 274 8 chr3 45947801 45948305 -181576273 + HAL1 LINE L1 1859 2496 -11 588 186 7 28 chr3 45948987 45949132 -181575446 + L1MEc LINE L1 1001 1142 -5254 426 274 131 0 chr3 45950100 45950275 -181574303 + L1M4 LINE L1 3753 3950 -2196 * 5030 249 74 17 chr3 45950256 45951938 -181572640 - L1MEc LINE L1 -4605 1791 14 3655 250 113 34 chr3 45952031 45953595 -181570983 + L1MC4 LINE L1 6350 8036 -6 1750 161 14 4 chr3 45954847 45955173 -181569405 - AluJb SINE Alu 0 329 1 325 192 112 56 chr3 45955646 45955771 -181568807 + MLT1I LTR MaLR 11 142 -267 513 239 55 25 chr3 45955804 45955967 -181568611 + MLT1I LTR MaLR 241 408 -1 3579 148 49 5 chr3 45956105 45956479 -181568099 - L1MB3 LINE L1 -2 6181 5764 360 0 0 0 chr3 45956479 45956519 -181568059 + (TG)n Simple_repeat Simple_repeat 1 40 0 3579 148 49 5 chr3 45956519 45956793 -181567785 - L1MB3 LINE L1 -419 5764 5504 1055 196 71 21 chr3 45957463 45957744 -181566834 + L1MB8 LINE L1 5882 6176 -2 468 209 37 8 chr3 45958170 45958304 -181566274 - Charlie7 DNA MER1_type -645 1967 1830 1171 320 18 32 chr3 45958305 45958862 -181565716 - Charlie7 DNA MER1_type -2031 581 33 183 42 0 0 chr3 45959597 45959621 -181564957 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 744 274 85 0 chr3 45962101 45962302 -181562276 - MIR SINE MIR -24 238 21 359 171 36 90 chr3 45963760 45963871 -181560707 - MER58B DNA MER1_type -16 325 221 5510 137 59 14 chr3 45968213 45969179 -181555399 - L1MC1 LINE L1 0 6333 5324 490 214 13 19 chr3 45969194 45969353 -181555225 - L1MD2 LINE L1 -6 6353 6196 2537 193 31 75 chr3 45969354 45970070 -181554508 - L1MC4a LINE L1 -151 7937 7254 1467 212 98 14 chr3 45970071 45970595 -181553983 - L1MC4a LINE L1 -814 5612 5207 * 3897 184 68 24 chr3 45970594 45971293 -181553285 - L1MCa LINE L1 -3609 2817 2150 477 0 0 0 chr3 45971293 45971346 -181553232 + (TA)n Simple_repeat Simple_repeat 1 53 0 3897 184 68 24 chr3 45971346 45971737 -181552841 - L1MCa LINE L1 -4276 2150 1778 2020 88 11 4 chr3 45971737 45971997 -181552581 - AluSc SINE Alu -11 298 37 3897 184 68 24 chr3 45971997 45972559 -181552019 - L1MCa LINE L1 -4648 1778 945 240 35 0 0 chr3 45972567 45972596 -181551982 + (TG)n Simple_repeat Simple_repeat 2 30 0 1632 141 57 56 chr3 45972596 45972980 -181551598 + MER21A LTR ERV1 28 459 -472 834 214 7 7 chr3 45973003 45973157 -181551421 + FRAM SINE Alu 1 154 -12 2171 161 19 92 chr3 45973169 45973646 -181550932 + MER21A LTR ERV1 462 903 -28 366 80 0 0 chr3 45973662 45973712 -181550866 - L1MCa LINE L1 -5477 949 900 * 369 179 0 0 chr3 45973707 45973774 -181550804 + L1MCa LINE L1 104 170 -6256 * 4175 152 86 48 chr3 45973766 45974151 -181550427 - L1MCa LINE L1 -5519 907 538 2151 99 10 10 chr3 45974151 45974445 -181550133 + AluSg SINE Alu 1 294 -16 4175 152 86 48 chr3 45974445 45974725 -181549853 - L1MCa LINE L1 -5888 538 199 2141 138 0 0 chr3 45974725 45975030 -181549548 - AluSx SINE Alu -7 305 1 4175 152 86 48 chr3 45975030 45975220 -181549358 - L1MCa LINE L1 -6227 199 18 263 222 143 0 chr3 45975238 45975301 -181549277 - L3 LINE CR1 -1 1576 1505 320 287 232 30 chr3 45975805 45975969 -181548609 - MIR3 SINE MIR -2 206 10 2719 42 0 9 chr3 45977197 45977528 -181547050 - L1PA8 LINE L1 0 6172 5845 285 272 9 35 chr3 45978261 45978375 -181546203 + (TCTG)n Simple_repeat Simple_repeat 2 112 0 339 385 0 0 chr3 45978728 45978858 -181545720 - MIR3 SINE MIR -21 187 58 201 39 0 0 chr3 45979167 45979193 -181545385 + (CACCC)n Simple_repeat Simple_repeat 3 28 0 221 272 107 48 chr3 45979629 45979835 -181544743 - L2 LINE L2 -213 3059 2842 246 32 0 0 chr3 45980800 45980831 -181543747 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2367 98 0 0 chr3 45981121 45981416 -181543162 - AluSx SINE Alu -17 295 1 4688 34 0 2 chr3 45981574 45982129 -181542449 - L1PA3 LINE L1 0 6155 5602 1826 146 80 3 chr3 45983141 45983428 -181541150 + AluJb SINE Alu 1 309 -3 194 317 184 11 chr3 45983529 45983738 -181540840 - L2 LINE L2 -295 2977 2722 231 276 105 13 chr3 45983925 45984001 -181540577 + MIR SINE MIR 108 190 -72 353 311 61 18 chr3 45984186 45984350 -181540228 - MIR SINE MIR -10 252 82 351 298 164 23 chr3 45984773 45984944 -181539634 + MIR SINE MIR 59 253 -9 245 276 0 0 chr3 45985192 45985258 -181539320 + CT-rich Low_complexity Low_complexity 1 69 -7 198 103 0 0 chr3 45985258 45985287 -181539291 + (TG)n Simple_repeat Simple_repeat 2 30 0 2083 212 71 41 chr3 45985499 45986036 -181538542 - MER119 DNA MER1_type -29 554 2 2379 118 0 0 chr3 45990396 45990700 -181533878 + AluSx SINE Alu 1 304 -8 1094 124 0 0 chr3 45991294 45991439 -181533139 - AluSg SINE Alu -165 145 1 492 266 51 32 chr3 45991947 45992238 -181532340 + LTR45 LTR ERV1 305 514 -11 2328 104 0 3 chr3 45992490 45992788 -181531790 - AluSx SINE Alu -15 297 1 2343 144 70 5 chr3 45993189 45993591 -181530987 - MSTC LTR MaLR 0 428 1 1836 193 78 39 chr3 45994736 45995222 -181529356 - MLT1D LTR MaLR 0 505 1 2206 113 0 0 chr3 45995407 45995690 -181528888 + AluSx SINE Alu 1 283 -29 360 259 155 65 chr3 45995727 45995959 -181528619 - Charlie8 DNA MER1_type -2163 254 2 1548 253 95 30 chr3 45997368 45997814 -181526764 - L1ME3A LINE L1 -211 5938 5523 2224 92 10 33 chr3 45997814 45998117 -181526461 + AluSp SINE Alu 1 296 -17 1548 253 95 30 chr3 45998117 45998269 -181526309 - L1ME3A LINE L1 -626 5523 5382 2322 92 20 3 chr3 45998269 45998575 -181526003 - AluSx SINE Alu -1 311 1 1548 253 95 30 chr3 45998575 45998589 -181525989 - L1ME3A LINE L1 -767 5382 5370 2145 129 0 16 chr3 45998589 45998900 -181525678 - AluSx SINE Alu -6 306 1 1548 253 95 30 chr3 45998900 45998962 -181525616 - L1ME3A LINE L1 -779 5370 5313 222 37 0 0 chr3 45998962 45998989 -181525589 + (TG)n Simple_repeat Simple_repeat 1 27 0 1548 253 95 30 chr3 45998989 45999030 -181525548 - L1ME3A LINE L1 -836 5313 5174 22 0 0 0 chr3 45999160 45999182 -181525396 + AT_rich Low_complexity Low_complexity 1 22 0 443 245 167 40 chr3 45999410 45999782 -181524796 - L1ME3A LINE L1 -1303 4826 4408 3815 150 45 14 chr3 45999785 46000559 -181524019 - L1MB3 LINE L1 0 6183 5386 833 213 75 48 chr3 46000707 46000762 -181523816 - L1MD3 LINE L1 0 7995 7943 1781 192 7 0 chr3 46000762 46001070 -181523508 + AluJo SINE Alu 1 310 -2 833 213 75 48 chr3 46001070 46001282 -181523296 - L1MD3 LINE L1 -52 7943 7721 6015 76 30 4 chr3 46001282 46002042 -181522536 - LTR17 LTR ERV1 0 780 1 2293 68 0 0 chr3 46002042 46002334 -181522244 - HERV17 LTR ERV1 0 8626 8335 255 57 0 0 chr3 46002328 46002363 -181522215 - HERV17 LTR ERV1 -1082 7544 7510 * 48023 51 2 9 chr3 46002356 46008413 -181516165 - HERV17 LTR ERV1 -2607 6019 1 6255 84 1 3 chr3 46008413 46009194 -181515384 - LTR17 LTR ERV1 0 780 1 7874 170 58 45 chr3 46009195 46009317 -181515261 - L1MC4a LINE L1 -258 7550 7431 1297 74 6 11 chr3 46009317 46009492 -181515086 - L1PA11 LINE L1 0 6174 6001 7874 170 58 45 chr3 46009492 46010296 -181514282 - L1MC4a LINE L1 -377 7431 6639 491 0 0 17 chr3 46010296 46010356 -181514222 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 7874 170 58 45 chr3 46010356 46010424 -181514154 - L1MC4a LINE L1 -1169 6639 6573 225 0 0 0 chr3 46010424 46010449 -181514129 + (TG)n Simple_repeat Simple_repeat 2 26 0 1979 106 36 4 chr3 46010449 46010724 -181513854 - AluSx SINE Alu -28 284 1 7874 170 58 45 chr3 46010724 46011441 -181513137 - L1MC4a LINE L1 -1235 6573 5806 1630 188 11 7 chr3 46011441 46011728 -181512850 - AluJo SINE Alu -19 293 6 7874 170 58 45 chr3 46011728 46011946 -181512632 - L1MC4a LINE L1 -2002 5806 5592 1012 261 24 90 chr3 46011951 46012030 -181512548 - MER68 LTR ERV1 0 562 479 2128 134 0 3 chr3 46012030 46012322 -181512256 + AluSx SINE Alu 1 291 -21 1012 261 24 90 chr3 46012322 46012664 -181511914 - MER68 LTR ERV1 -83 479 169 1190 188 0 42 chr3 46012752 46012992 -181511586 - AluJo SINE Alu -82 230 1 263 239 30 0 chr3 46013016 46013083 -181511495 - MER68 LTR ERV1 -450 112 44 819 181 137 6 chr3 46013139 46013321 -181511257 - L1MC4a LINE L1 -2220 5588 5383 1263 260 138 64 chr3 46013325 46013822 -181510756 - L1ME3A LINE L1 -1759 4370 3911 2262 94 0 14 chr3 46013822 46014119 -181510459 + AluSx SINE Alu 1 293 -19 618 109 0 0 chr3 46014120 46014221 -181510357 + (TA)n Simple_repeat Simple_repeat 2 102 0 1263 260 138 64 chr3 46014221 46014293 -181510285 - L1ME3A LINE L1 -2218 3911 3846 1492 190 4 4 chr3 46014293 46014540 -181510038 + AluJb SINE Alu 46 292 -20 1263 260 138 64 chr3 46014540 46015403 -181509175 - L1ME3A LINE L1 -2283 3846 2829 322 181 72 36 chr3 46015438 46015521 -181509057 + L1M4 LINE L1 4513 4598 -1548 824 95 0 0 chr3 46015648 46015753 -181508825 - U6 snRNA snRNA -2 105 1 2536 60 0 10 chr3 46015780 46016079 -181508499 + AluY SINE Alu 1 296 -15 366 282 56 57 chr3 46016091 46016263 -181508315 - L1ME3A LINE L1 -855 1635 1464 1687 134 4 16 chr3 46016263 46016516 -181508062 - AluJb SINE Alu -13 299 50 366 282 56 57 chr3 46016516 46016719 -181507859 - L1ME3A LINE L1 -1026 1464 1229 624 348 143 24 chr3 46016721 46017258 -181507320 - L1ME3A LINE L1 -4951 1168 568 275 311 59 8 chr3 46018474 46018593 -181505985 - MIR SINE MIR -61 147 23 238 179 18 18 chr3 46020009 46020065 -181504513 + GA-rich Low_complexity Low_complexity 3 58 0 554 249 44 39 chr3 46020075 46020256 -181504322 - MIR SINE MIR -35 227 46 489 248 91 66 chr3 46021648 46021846 -181502732 - MIR SINE MIR -55 207 5 2002 156 0 0 chr3 46021885 46022174 -181502404 + AluJo SINE Alu 1 289 -23 2933 197 22 20 chr3 46023032 46023616 -181500962 - MLT-int LTR MaLR -933 802 218 291 289 133 7 chr3 46024017 46024152 -181500426 + MIR SINE MIR 81 232 -30 204 179 0 0 chr3 46025466 46025505 -181499073 + (TG)n Simple_repeat Simple_repeat 1 39 0 524 289 90 15 chr3 46027602 46027806 -181496772 - MIR SINE MIR -21 241 23 303 360 52 58 chr3 46029102 46029410 -181495168 - L2 LINE L2 -37 3235 2930 * 304 298 39 10 chr3 46029397 46029501 -181495077 + MIR SINE MIR 49 155 -107 678 246 42 18 chr3 46029507 46029674 -181494904 - MIR SINE MIR 0 262 92 296 267 89 11 chr3 46029679 46029769 -181494809 + MIR SINE MIR 158 254 -8 927 175 52 116 chr3 46031785 46031857 -181492721 + MER33 DNA MER1_type 1 70 -2515 1725 96 4 12 chr3 46031857 46032134 -181492444 + AluSx SINE Alu 40 314 0 927 175 52 116 chr3 46032134 46032314 -181492264 + MER33 DNA MER1_type 70 227 -2358 3032 73 0 0 chr3 46032314 46032699 -181491879 - L1PA8 LINE L1 -4 6168 5784 927 175 52 116 chr3 46032699 46032770 -181491808 + MER33 DNA MER1_type 227 301 -23 477 331 122 26 chr3 46033353 46033779 -181490799 + L1MEd LINE L1 537 1003 -5116 22 0 0 0 chr3 46033785 46033807 -181490771 + AT_rich Low_complexity Low_complexity 1 22 0 853 161 7 7 chr3 46033930 46034085 -181490493 - FRAM SINE Alu -10 166 12 650 161 165 32 chr3 46034109 46034327 -181490251 - L1ME3A LINE L1 -75 6095 5849 1040 164 27 109 chr3 46034327 46034449 -181490129 - AluJo SINE Alu -76 236 144 1838 136 18 0 chr3 46034449 46034729 -181489849 + AluSx SINE Alu 1 285 -27 1040 164 27 109 chr3 46034729 46034862 -181489716 - AluJo SINE Alu -168 144 2 1109 250 56 56 chr3 46034866 46035376 -181489202 - L1ME3A LINE L1 -344 5818 5310 1878 141 0 21 chr3 46035376 46035689 -181488889 - AluSx SINE Alu 0 307 1 1109 250 56 56 chr3 46035689 46036553 -181488025 - L1ME3A LINE L1 -852 5310 4281 624 290 25 33 chr3 46036559 46036835 -181487743 - L1ME3A LINE L1 -1956 4190 3917 2409 156 52 0 chr3 46037606 46038011 -181486567 + MSTC LTR MaLR 3 428 0 322 241 38 89 chr3 46038966 46039124 -181485454 + LTR58 LTR ERV1 197 449 -230 1717 154 48 170 chr3 46039264 46039927 -181484651 - LTR8A LTR ERV1 0 727 146 1125 114 12 0 chr3 46039931 46040098 -181484480 + AluYa5 SINE Alu 136 304 -7 598 178 44 44 chr3 46040098 46040233 -181484345 - LTR8 LTR ERV1 -556 135 1 257 235 174 10 chr3 46040386 46040484 -181484094 + L2 LINE L2 2947 3060 -212 204 244 217 9 chr3 46041018 46041133 -181483445 - L2 LINE L2 -5 3308 3170 1016 155 61 0 chr3 46041520 46041701 -181482877 + MER3 DNA MER1_type 8 199 -10 440 161 140 0 chr3 46041703 46041796 -181482782 + MER5A DNA MER1_type 77 182 -7 843 277 56 23 chr3 46041799 46042283 -181482295 + L1MC/D LINE L1 2806 3305 -2841 3156 161 14 5 chr3 46042286 46042869 -181481709 + L1MB8 LINE L1 5586 6173 -5 1434 173 43 27 chr3 46042870 46043170 -181481408 - AluJb SINE Alu -7 305 1 435 278 69 35 chr3 46043186 46043462 -181481116 + L1MC/D LINE L1 5475 5761 -379 988 193 6 6 chr3 46043537 46043703 -181480875 + FRAM SINE Alu 1 166 0 817 136 53 0 chr3 46044024 46044156 -181480422 + FRAM SINE Alu 26 164 -12 502 279 39 74 chr3 46044190 46044419 -181480159 + L1ME3 LINE L1 3574 3794 -2352 295 156 0 0 chr3 46044419 46044464 -181480114 + AluSg/x SINE Alu 84 128 -172 2112 102 0 0 chr3 46044464 46044788 -181479790 + AluSx SINE Alu 1 324 0 1880 98 36 4 chr3 46044794 46045090 -181479488 + AluSx SINE Alu 1 305 0 541 291 119 44 chr3 46045136 46045631 -181478947 + L1ME3 LINE L1 3768 4299 -1847 230 325 160 10 chr3 46046036 46046242 -181478336 + L2 LINE L2 2471 2707 -607 309 226 59 29 chr3 46046410 46046512 -181478066 + L2 LINE L2 3168 3272 0 597 287 133 31 chr3 46047459 46047615 -181476963 - L1M4 LINE L1 -2875 3271 3132 1623 178 45 0 chr3 46047615 46047627 -181476951 - AluJo SINE Alu -7 305 295 894 128 0 0 chr3 46047627 46047776 -181476802 + (TCC)n Simple_repeat Simple_repeat 2 150 0 1623 178 45 0 chr3 46047776 46048055 -181476523 - AluJo SINE Alu -17 295 1 597 287 133 31 chr3 46048055 46048091 -181476487 - L1M4 LINE L1 -3014 3132 3101 1878 199 37 26 chr3 46048091 46048374 -181476204 - MLT1C LTR MaLR 0 467 176 2117 96 23 3 chr3 46048374 46048676 -181475902 - AluSp SINE Alu -5 308 1 1878 199 37 26 chr3 46048676 46048854 -181475724 - MLT1C LTR MaLR -291 176 1 597 287 133 31 chr3 46048854 46049074 -181475504 - L1M4 LINE L1 -3045 3101 2816 883 161 19 25 chr3 46049268 46049429 -181475149 + L1PB4 LINE L1 5997 6156 0 829 181 0 0 chr3 46050037 46050170 -181474408 - FLAM_C SINE Alu 0 133 1 2106 131 0 3 chr3 46050278 46050591 -181473987 + AluSx SINE Alu 1 312 0 512 323 50 37 chr3 46051144 46051871 -181472707 + L1ME3 LINE L1 5043 5784 -386 2502 192 56 40 chr3 46051911 46052485 -181472093 - MER119 DNA MER1_type 0 583 1 1570 177 28 72 chr3 46052551 46052940 -181471638 + MLT1A2 LTR MaLR 1 372 -2 499 81 267 0 chr3 46053074 46053160 -181471418 + MER30B DNA MER1_type 1 109 -81 279 0 0 0 chr3 46053178 46053209 -181471369 + (TTA)n Simple_repeat Simple_repeat 3 33 0 9744 29 1 0 chr3 46053209 46055103 -181469475 - L1PA3 LINE L1 -18 6137 4243 4175 25 21 0 chr3 46055103 46055589 -181468989 + L1PA3 LINE L1 3747 4242 -1904 736 154 0 0 chr3 46055589 46055693 -181468885 + MER30B DNA MER1_type 127 230 0 770 107 41 0 chr3 46055838 46055960 -181468618 - LTR54 LTR ERV1 0 510 384 4760 102 10 47 chr3 46055962 46056680 -181467898 - LTR8 LTR ERV1 0 691 1 288 191 16 32 chr3 46056680 46056743 -181467835 + MIR SINE MIR 91 152 -110 571 181 156 25 chr3 46056744 46056904 -181467674 + L1ME3 LINE L1 5921 6101 -61 2020 101 10 13 chr3 46056905 46057040 -181467538 + AluSq SINE Alu 1 135 -178 2180 98 3 0 chr3 46057040 46057336 -181467242 + AluSp SINE Alu 1 297 -16 2020 101 10 13 chr3 46057336 46057498 -181467080 + AluSq SINE Alu 135 297 -16 205 200 91 18 chr3 46057580 46057635 -181466943 + MIR SINE MIR 132 190 -72 184 259 148 25 chr3 46057980 46058061 -181466517 + L2 LINE L2 3201 3291 -22 21 0 0 0 chr3 46058833 46058854 -181465724 + GC_rich Low_complexity Low_complexity 1 21 0 1905 117 13 7 chr3 46059216 46059514 -181465064 + AluJo SINE Alu 3 302 -10 278 333 0 0 chr3 46059799 46059874 -181464704 + MIR3 SINE MIR 82 156 -52 531 289 104 62 chr3 46060643 46061333 -181463245 - L2 LINE L2 0 3313 2593 1951 169 12 64 chr3 46061468 46061876 -181462702 - MLT1B LTR MaLR -3 387 1 2211 174 60 72 chr3 46062116 46062678 -181461900 - L1M4 LINE L1 -2717 3429 2875 1912 112 0 88 chr3 46062678 46063018 -181461560 + AluSx SINE Alu 1 310 -2 2211 174 60 72 chr3 46063018 46063138 -181461440 - L1M4 LINE L1 -3271 2875 2755 1845 235 62 31 chr3 46063339 46063923 -181460655 - L1ME1 LINE L1 -5 6161 5560 793 83 0 0 chr3 46064012 46064121 -181460457 - AluY SINE Alu -1 310 202 629 235 50 0 chr3 46064128 46064343 -181460235 + L1MC4a LINE L1 5767 5822 -332 1640 180 3 7 chr3 46064343 46064643 -181459935 + AluJb SINE Alu 1 299 -13 819 108 0 0 chr3 46064737 46064848 -181459730 - AluY SINE Alu -200 111 1 565 284 50 100 chr3 46064891 46065124 -181459454 - L1ME1 LINE L1 -1005 5141 4898 1595 160 10 17 chr3 46065124 46065424 -181459154 - AluJb SINE Alu -14 298 1 565 284 50 100 chr3 46065424 46065454 -181459124 - L1ME1 LINE L1 -1248 4898 4868 1872 127 0 0 chr3 46065454 46065721 -181458857 + AluSx SINE Alu 37 303 -9 565 284 50 100 chr3 46065721 46065882 -181458696 - L1ME1 LINE L1 -1278 4868 4700 1906 130 20 0 chr3 46065882 46066183 -181458395 - AluSx SINE Alu -5 307 1 565 284 50 100 chr3 46066183 46066320 -181458258 - L1ME1 LINE L1 -1446 4700 4621 1989 134 0 3 chr3 46066320 46066619 -181457959 - AluSx SINE Alu -14 298 1 565 284 50 100 chr3 46066619 46066793 -181457785 - L1ME1 LINE L1 -1525 4621 4440 1594 184 172 42 chr3 46066799 46067271 -181457307 + MLT1H LTR MaLR 3 535 -14 1198 201 70 38 chr3 46067403 46067716 -181456862 + MLT1J1 LTR MaLR 69 391 -55 2179 101 0 3 chr3 46067784 46068090 -181456488 + AluY SINE Alu 1 305 -6 1339 195 58 0 chr3 46068097 46068389 -181456189 - L1MB7 LINE L1 -16 6168 5860 3046 147 49 46 chr3 46068445 46068631 -181455947 - L1MB7 LINE L1 -301 5877 5693 1560 205 62 52 chr3 46068631 46069017 -181455561 + MLT1B LTR MaLR 1 390 0 3046 147 49 46 chr3 46069017 46069205 -181455373 - L1MB7 LINE L1 -485 5693 5507 2415 55 0 0 chr3 46069205 46069495 -181455083 - AluY SINE Alu -17 294 5 3046 147 49 46 chr3 46069495 46069893 -181454685 - L1MB7 LINE L1 -671 5507 5107 417 303 6 63 chr3 46069899 46070027 -181454551 - L1ME1 LINE L1 -2468 3678 3561 2485 25 0 0 chr3 46070027 46070312 -181454266 + AluYb8 SINE Alu 29 313 -5 417 303 6 63 chr3 46070312 46070358 -181454220 - L1ME1 LINE L1 -2585 3561 3514 459 0 0 0 chr3 46070412 46070463 -181454115 + (TG)n Simple_repeat Simple_repeat 2 52 0 1852 138 3 7 chr3 46070467 46070750 -181453828 - AluSx SINE Alu -30 282 1 328 220 54 65 chr3 46070894 46070913 -181453665 - L1MA10 LINE L1 0 6334 6316 528 223 100 50 chr3 46070913 46071069 -181453509 - L1ME1 LINE L1 -6 6160 5988 2262 200 34 22 chr3 46071069 46071574 -181453004 - MER9 LTR ERVK 0 511 1 528 223 100 50 chr3 46071574 46071637 -181452941 - L1ME1 LINE L1 -178 5988 5930 782 268 41 0 chr3 46071662 46071882 -181452696 - L1ME1 LINE L1 -328 5838 5610 2175 103 0 13 chr3 46072859 46073169 -181451409 + AluSq SINE Alu 1 306 -7 313 283 9 0 chr3 46073472 46073578 -181451000 + LTR33A LTR ERVL 417 523 0 1790 140 4 0 chr3 46074358 46074629 -181449949 - AluJo SINE Alu -25 287 16 911 178 0 0 chr3 46074629 46074781 -181449797 + AluJb SINE Alu 144 295 -17 213 365 47 0 chr3 46075562 46075647 -181448931 - MIR SINE MIR -22 240 152 354 303 37 0 chr3 46075657 46075766 -181448812 + MIR SINE MIR 24 136 -126 315 211 140 38 chr3 46075845 46075955 -181448623 - MIR SINE MIR -85 123 30 318 276 99 49 chr3 46076114 46076357 -181448221 + L2 LINE L2 2244 2498 -816 183 310 211 23 chr3 46076781 46076952 -181447626 + L2 LINE L2 3057 3259 -13 296 100 0 20 chr3 46076952 46077002 -181447576 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 183 361 109 0 chr3 46077120 46077239 -181447339 - MIR SINE MIR -59 149 18 370 284 18 0 chr3 46078109 46078218 -181446360 + MIR SINE MIR 126 236 -26 22 0 0 0 chr3 46078649 46078671 -181445907 + AT_rich Low_complexity Low_complexity 1 22 0 686 162 54 0 chr3 46078671 46078782 -181445796 - FLAM_A SINE Alu -15 118 2 1611 222 131 25 chr3 46080493 46080983 -181443595 - MLT1F LTR MaLR 0 542 1 330 26 0 0 chr3 46082343 46082382 -181442196 + (CA)n Simple_repeat Simple_repeat 1 39 0 225 206 0 4 chr3 46082458 46082505 -181442073 + L2 LINE L2 3209 3288 -18 611 263 177 11 chr3 46082684 46082859 -181441719 + MIR SINE MIR 23 226 -36 1416 158 90 21 chr3 46083225 46083389 -181441189 - AluJo SINE Alu -14 298 106 2373 54 0 7 chr3 46083389 46083686 -181440892 - AluY SINE Alu -16 295 1 1416 158 90 21 chr3 46083686 46083800 -181440778 - AluJo SINE Alu -206 106 1 364 304 59 59 chr3 46085043 46085263 -181439315 - L3 LINE CR1 -216 1361 1142 343 316 171 0 chr3 46085612 46085799 -181438779 - L1MC4a LINE L1 -1978 5830 5612 321 218 92 23 chr3 46085886 46085973 -181438605 - L2 LINE L2 -1 3312 3220 981 142 6 59 chr3 46085986 46086155 -181438423 + FRAM SINE Alu 1 160 -6 215 270 61 54 chr3 46087084 46087232 -181437346 - L2 LINE L2 -201 3071 2923 387 309 29 37 chr3 46087587 46087723 -181436855 + MIR SINE MIR 46 180 -82 292 196 89 98 chr3 46089199 46089311 -181435267 - L2 LINE L2 0 3272 3162 557 262 82 69 chr3 46089481 46089550 -181435028 - MIR SINE MIR -7 255 188 2035 113 26 0 chr3 46089550 46089852 -181434726 - AluSx SINE Alu -2 310 1 557 262 82 69 chr3 46089852 46090015 -181434563 - MIR SINE MIR -74 188 20 462 319 92 32 chr3 46090399 46090747 -181433831 - L2 LINE L2 0 3313 2945 367 337 98 29 chr3 46090936 46091141 -181433437 - MIR SINE MIR -27 235 17 189 74 0 0 chr3 46091281 46091308 -181433270 + (CA)n Simple_repeat Simple_repeat 1 27 0 2794 122 24 19 chr3 46091937 46092363 -181432215 - MSTC LTR MaLR 0 428 1 1287 276 38 8 chr3 46092720 46093090 -181431488 + L1ME3A LINE L1 5561 5941 -229 1619 112 134 26 chr3 46093101 46093205 -181431373 + AluJb SINE Alu 1 92 -220 9333 42 2 0 chr3 46093205 46094274 -181430304 + MER11C LTR ERVK 1 1071 0 1619 112 134 26 chr3 46094274 46094438 -181430140 + AluJb SINE Alu 92 298 -14 457 204 109 15 chr3 46094492 46094629 -181429949 + L1ME3A LINE L1 6016 6165 -5 686 257 136 5 chr3 46095208 46095422 -181429156 - MIR SINE MIR -8 254 13 1335 150 29 68 chr3 46095615 46095922 -181428656 + AluJb SINE Alu 5 299 -13 2049 128 3 7 chr3 46096141 46096478 -181428100 - AluSq SINE Alu 0 313 1 454 175 0 0 chr3 46096845 46096925 -181427653 + MER116 DNA Mariner 1 80 0 1837 130 7 0 chr3 46097101 46097385 -181427193 - AluSx SINE Alu 0 312 27 308 300 79 21 chr3 46097491 46097631 -181426947 - L1MDa LINE L1 -2951 3589 3442 1057 238 59 4 chr3 46097744 46098017 -181426561 - L1MC4 LINE L1 -1070 6972 6685 762 223 42 63 chr3 46098022 46098260 -181426318 - L1MC4 LINE L1 -1314 6728 6496 246 128 0 24 chr3 46098508 46098580 -181425998 - L1MDa LINE L1 -3986 2554 2487 272 194 7 42 chr3 46098609 46098753 -181425825 - L1MDa LINE L1 -4172 2549 2411 349 301 0 9 chr3 46098817 46098930 -181425648 + L1MEc LINE L1 1676 1787 -4609 1353 261 78 50 chr3 46098937 46099468 -181425110 - L1MDa LINE L1 -4713 2008 1441 2061 102 0 3 chr3 46099468 46099781 -181424797 - AluSx SINE Alu 0 314 3 1353 261 78 50 chr3 46099781 46100119 -181424459 - L1MDa LINE L1 -5280 1441 1114 333 36 0 54 chr3 46100154 46100210 -181424368 - L1MD1 LINE L1 -8 6234 6182 216 86 0 0 chr3 46100270 46100305 -181424273 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 24 53 0 0 chr3 46100315 46100353 -181424225 + AT_rich Low_complexity Low_complexity 1 38 0 1461 128 58 11 chr3 46100356 46100630 -181423948 + L1MA8 LINE L1 5999 6285 -6 264 238 89 0 chr3 46100646 46100747 -181423831 + L1ME4a LINE L1 5963 6072 -49 5551 24 0 6 chr3 46101058 46101685 -181422893 - SVA Other Other 0 1386 764 1975 122 13 10 chr3 46102273 46102577 -181422001 - AluSq SINE Alu -8 305 1 1477 185 13 53 chr3 46102584 46102886 -181421692 - AluJo SINE Alu -22 290 1 1886 133 19 7 chr3 46103001 46103309 -181421269 + AluSx SINE Alu 1 312 0 506 222 67 33 chr3 46103484 46103664 -181420914 - L1ME3A LINE L1 -223 5947 5762 737 187 80 43 chr3 46103664 46103851 -181420727 + MLT1A1 LTR MaLR 1 194 -171 415 162 15 0 chr3 46103858 46103926 -181420652 + MER20 DNA MER1_type 122 190 -29 1287 279 68 57 chr3 46104201 46104358 -181420220 - L1ME3A LINE L1 -788 5358 5204 2167 79 7 0 chr3 46104358 46104658 -181419920 - AluSq SINE Alu 0 302 1 1287 279 68 57 chr3 46104658 46105210 -181419368 - L1ME3A LINE L1 -942 5204 4660 1686 158 27 10 chr3 46105210 46105507 -181419071 - AluJo SINE Alu -10 302 1 1287 279 68 57 chr3 46105507 46105593 -181418985 - L1ME3A LINE L1 -1486 4660 4576 2594 114 2 35 chr3 46105593 46105996 -181418582 - MLT1B LTR MaLR 0 390 1 1287 279 68 57 chr3 46105996 46106665 -181417913 - L1ME3A LINE L1 -1570 4576 4066 2727 183 33 40 chr3 46106665 46107211 -181417367 - MLT1F LTR MaLR 0 542 1 1287 279 68 57 chr3 46107211 46107323 -181417255 - L1ME3A LINE L1 -2080 4066 3957 1364 319 101 29 chr3 46107705 46108209 -181416369 - L3 LINE CR1 -108 1469 878 1202 233 133 45 chr3 46108209 46108629 -181415949 - LTR16A1 LTR ERVL 0 457 1 1364 319 101 29 chr3 46108629 46108974 -181415604 - L3 LINE CR1 -699 878 559 2329 85 3 0 chr3 46109873 46110179 -181414399 - AluY SINE Alu -4 307 1 2260 95 3 0 chr3 46110248 46110543 -181414035 + AluSg SINE Alu 1 296 -14 354 74 0 0 chr3 46110701 46110755 -181413823 + (CCTG)n Simple_repeat Simple_repeat 2 55 0 2029 86 3 71 chr3 46110801 46111127 -181413451 + AluSc SINE Alu 1 304 -5 1557 148 47 25 chr3 46111162 46111440 -181413138 - AluJb SINE Alu -12 300 17 567 272 81 0 chr3 46111539 46111712 -181412866 - HAL1 LINE L1 -846 1661 1475 512 314 230 8 chr3 46112220 46112615 -181411963 - L2 LINE L2 0 3313 2831 524 204 29 15 chr3 46112733 46112870 -181411708 - L1MB8 LINE L1 0 6178 6040 1660 257 46 20 chr3 46113454 46113893 -181410685 - LTR16A LTR ERVL 0 450 1 1794 201 71 75 chr3 46113950 46114471 -181410107 - LTR40a LTR ERVL 0 519 1 281 351 28 46 chr3 46114625 46114776 -181409802 + MIR SINE MIR 42 188 -63 886 183 73 85 chr3 46114886 46115073 -181409505 - MER33 DNA MER1_type -2261 324 141 1890 130 27 3 chr3 46115073 46115366 -181409212 + AluJb SINE Alu 1 300 -12 886 183 73 85 chr3 46115366 46115506 -181409072 - MER33 DNA MER1_type -2444 141 1 286 264 28 28 chr3 46115882 46115988 -181408590 - MER117 DNA MER1_type -36 161 56 1839 142 0 32 chr3 46116594 46116905 -181407673 + AluSx SINE Alu 1 301 -11 458 240 123 34 chr3 46117128 46117307 -181407271 - L1ME4a LINE L1 -133 5988 5794 877 98 23 23 chr3 46117314 46117447 -181407131 + FLAM_C SINE Alu 1 133 0 45238 37 4 1 chr3 46117460 46123596 -181400982 + L1PA3 LINE L1 9 6154 -1 2273 98 0 3 chr3 46124042 46124348 -181400230 - AluSx SINE Alu -7 305 1 323 323 60 6 chr3 46124573 46124740 -181399838 - L1ME4a LINE L1 -449 5672 5497 232 326 0 20 chr3 46125633 46125731 -181398847 + C-rich Low_complexity Low_complexity 2 97 0 540 319 84 52 chr3 46126810 46127519 -181397059 + HAL1b LINE L1 25 763 -585 1913 114 44 83 chr3 46127519 46127558 -181397020 - THE1C LTR MaLR -1 374 335 2087 106 10 0 chr3 46127558 46127851 -181396727 + AluSx SINE Alu 1 296 -16 1913 114 44 83 chr3 46127851 46128198 -181396380 - THE1C LTR MaLR -40 335 3 540 319 84 52 chr3 46128198 46128275 -181396303 + HAL1b LINE L1 763 836 -512 326 315 67 13 chr3 46128532 46128846 -181395732 + L1M4 LINE L1 2120 2450 -3696 305 277 99 64 chr3 46128869 46129010 -181395568 - HAL1b LINE L1 -437 911 766 1077 133 57 0 chr3 46129210 46129368 -181395210 + AluJb SINE Alu 1 167 -145 2315 112 0 0 chr3 46129658 46129954 -181394624 + AluSg SINE Alu 3 298 -12 2188 118 0 19 chr3 46129966 46130269 -181394309 + AluSx SINE Alu 1 299 -13 204 97 0 0 chr3 46130269 46130300 -181394278 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1059 266 107 8 chr3 46130344 46130708 -181393870 + L1MC4a LINE L1 5460 5859 -1949 309 224 82 0 chr3 46130704 46130802 -181393776 - L1MEc LINE L1 -1618 4808 4703 * 3650 151 41 37 chr3 46130991 46131632 -181392946 - L1MB4 LINE L1 -63 6117 5471 558 0 0 0 chr3 46131632 46131694 -181392884 + (TA)n Simple_repeat Simple_repeat 1 62 0 3650 151 41 37 chr3 46131694 46131806 -181392772 - L1MB4 LINE L1 -709 5471 5361 1059 236 77 61 chr3 46131893 46131921 -181392657 - L1MEc LINE L1 -1792 4634 4608 2211 107 0 3 chr3 46131921 46132210 -181392368 - AluSc SINE Alu -21 288 1 1059 236 77 61 chr3 46132210 46132625 -181391953 - L1MEc LINE L1 -1818 4608 4184 509 297 23 0 chr3 46132636 46132811 -181391767 - L1MEc LINE L1 -2566 3860 3682 1943 206 63 30 chr3 46132852 46133347 -181391231 + MER9 LTR ERVK 1 511 0 3314 156 27 38 chr3 46133347 46134251 -181390327 + HERVK9 LTR ERVK 1 667 -5249 * 24571 142 27 33 chr3 46134247 46135175 -181389403 + HERVK9 LTR ERVK 1626 2558 -3358 2419 80 0 0 chr3 46135175 46135464 -181389114 - AluY SINE Alu -22 289 1 24571 142 27 33 chr3 46135464 46138851 -181385727 + HERVK9 LTR ERVK 2558 5916 0 1921 207 60 34 chr3 46138852 46139349 -181385229 + MER9 LTR ERVK 2 511 0 478 98 232 0 chr3 46139349 46139431 -181385147 - AluJ/FLAM SINE Alu -210 102 2 2909 235 108 29 chr3 46139444 46139682 -181384896 - L1MEc LINE L1 -2757 3669 3451 2108 136 7 0 chr3 46139682 46139984 -181384594 - AluSx SINE Alu -8 304 1 2909 235 108 29 chr3 46139984 46140787 -181383791 - L1MEc LINE L1 -2975 3451 2546 700 203 31 12 chr3 46140803 46141005 -181383573 - L1MEc LINE L1 -3962 2504 2248 1626 257 46 5 chr3 46141024 46141437 -181383141 + LTR16A LTR ERVL 21 450 0 1013 129 0 7 chr3 46141506 46141653 -181382925 - MLT1B LTR MaLR 0 390 245 11205 46 4 0 chr3 46141659 46143791 -181380787 - L1PA6 LINE L1 -4 6150 4007 1178 174 108 19 chr3 46143791 46144049 -181380529 - THE1C LTR MaLR -60 315 35 784 115 0 0 chr3 46144051 46144164 -181380414 - THE1C-int LTR MaLR -170 1410 1298 10163 109 58 11 chr3 46144195 46144383 -181380195 - THE1C-int LTR MaLR 0 1580 1402 2087 125 7 0 chr3 46144383 46144670 -181379908 + AluSc SINE Alu 1 289 -20 10163 109 58 11 chr3 46144670 46145989 -181378589 - THE1C-int LTR MaLR -178 1402 1 2109 141 59 8 chr3 46145991 46146346 -181378232 - THE1C LTR MaLR -2 373 1 11797 184 25 30 chr3 46146361 46146947 -181377631 + L1MA4A LINE L1 1676 2264 -3882 1671 173 4 14 chr3 46146947 46147224 -181377354 + AluSx SINE Alu 1 274 -38 11797 184 25 30 chr3 46147224 46147423 -181377155 + L1MA4A LINE L1 2264 2463 -3683 189 0 0 0 chr3 46147423 46147444 -181377134 + (CA)n Simple_repeat Simple_repeat 2 22 0 11797 184 25 30 chr3 46147444 46148818 -181375760 + L1MA4A LINE L1 2463 3843 -2303 2231 105 0 14 chr3 46148818 46149165 -181375413 + AluSx SINE Alu 1 312 0 11797 184 25 30 chr3 46149165 46149765 -181374813 + L1MA4A LINE L1 3843 4361 -1785 1606 157 36 32 chr3 46149765 46149892 -181374686 + AluJo SINE Alu 1 126 -186 2159 99 49 0 chr3 46149892 46150176 -181374402 + AluSc SINE Alu 1 298 -11 1606 157 36 32 chr3 46150176 46150329 -181374249 + AluJo SINE Alu 126 282 -30 11797 184 25 30 chr3 46150329 46150652 -181373926 + L1MA4A LINE L1 4361 4684 -1462 687 120 0 0 chr3 46150652 46150752 -181373826 - LTR12 LTR ERV1 0 714 615 338 236 11 0 chr3 46150755 46150844 -181373734 - LTR30 LTR ERV1 -80 642 553 1521 137 15 47 chr3 46150845 46151209 -181373369 - LTR12 LTR ERV1 -406 2032 1 5373 116 11 16 chr3 46151209 46151584 -181372994 - HERV9 LTR ERV1 0 8399 8024 2411 88 0 0 chr3 46151584 46151881 -181372697 + AluY SINE Alu 1 297 -14 5373 116 11 16 chr3 46151881 46152305 -181372273 - HERV9 LTR ERV1 -375 8024 7604 2772 162 88 81 chr3 46152284 46153178 -181371400 - Harlequin LTR ERV1 -5156 1740 840 * 33986 107 23 14 chr3 46153145 46158020 -181366558 - Harlequin LTR ERV1 -3425 4974 55 745 166 43 80 chr3 46157995 46158158 -181366420 - pTR5 LTR ERV1 -1994 444 288 * 367 181 79 40 chr3 46158161 46158262 -181366316 - LTR30 LTR ERV1 -98 677 553 1307 121 7 167 chr3 46158262 46158568 -181366010 - LTR12 LTR ERV1 -457 257 1 4721 151 30 26 chr3 46158570 46159416 -181365162 + L1MA4A LINE L1 4683 5524 -780 1708 173 0 23 chr3 46159416 46159723 -181364855 - AluJo SINE Alu -12 300 1 4721 151 30 26 chr3 46159723 46160039 -181364539 + L1MA4A LINE L1 5524 5837 -467 793 148 0 63 chr3 46160039 46160181 -181364397 + FLAM_C SINE Alu 1 133 0 4721 151 30 26 chr3 46160181 46160571 -181364007 + L1MA4A LINE L1 5837 6303 -1 738 286 47 35 chr3 46160577 46161000 -181363578 - L1MEc LINE L1 -5467 929 502 38 0 0 0 chr3 46161195 46161233 -181363345 + AT_rich Low_complexity Low_complexity 1 38 0 2181 115 0 10 chr3 46161237 46161525 -181363053 - AluSc SINE Alu -24 285 1 816 165 0 8 chr3 46161528 46161661 -181362917 - AluJo/FLAM SINE Alu -169 133 2 700 252 57 41 chr3 46161741 46161987 -181362591 + MLT1I LTR MaLR 158 407 -2 227 163 20 20 chr3 46162622 46162671 -181361907 - Tigger7 DNA MER2_type -929 1558 1510 283 258 165 82 chr3 46162849 46163043 -181361535 - L2 LINE L2 -617 2697 2488 2151 157 17 44 chr3 46163056 46163469 -181361109 - LOR1b LTR ERV1 0 461 60 2063 122 7 0 chr3 46163469 46163757 -181360821 + AluSq SINE Alu 23 312 -1 581 271 41 14 chr3 46163793 46164014 -181360564 - L2 LINE L2 -855 2459 2233 275 331 38 19 chr3 46164125 46164282 -181360296 + ERVL LTR ERVL 4361 4520 -1244 1934 116 20 27 chr3 46164545 46164839 -181359739 - AluSx SINE Alu -20 292 1 310 196 31 3 chr3 46164899 46164967 -181359611 - MIR SINE MIR -58 150 98 26 50 0 0 chr3 46166091 46166131 -181358447 + GC_rich Low_complexity Low_complexity 1 40 0 36 87 0 0 chr3 46166142 46166234 -181358344 + GC_rich Low_complexity Low_complexity 1 92 0 26 98 0 0 chr3 46166319 46166401 -181358177 + GC_rich Low_complexity Low_complexity 1 82 0 1452 202 24 65 chr3 46168592 46168963 -181355615 - MLT1A2 LTR MaLR 0 374 19 662 203 97 62 chr3 46168974 46169006 -181355572 - MER33 DNA MER1_type -2347 238 209 2141 108 3 0 chr3 46169006 46169294 -181355284 + AluSc SINE Alu 1 289 -20 662 203 97 62 chr3 46169294 46169488 -181355090 - MER33 DNA MER1_type -2376 209 4 266 254 0 17 chr3 46170364 46170423 -181354155 - Charlie4 DNA MER1_type -22 1939 1882 934 167 34 98 chr3 46170921 46171155 -181353423 - MER20 DNA MER1_type 0 219 1 21 36 0 0 chr3 46173779 46173807 -181350771 + AT_rich Low_complexity Low_complexity 1 28 0 2261 78 0 7 chr3 46173995 46174324 -181350254 + AluY SINE Alu 1 327 0 1086 220 25 49 chr3 46174356 46174683 -181349895 - L1ME3A LINE L1 -9 6161 5843 1326 215 32 81 chr3 46175836 46176245 -181348333 - MLT1B LTR MaLR 0 390 2 737 171 0 16 chr3 46176860 46176989 -181347589 + FLAM_A SINE Alu 1 127 -6 2312 100 3 7 chr3 46177202 46177503 -181347075 + AluSg SINE Alu 1 300 -10 967 275 106 32 chr3 46177603 46178167 -181346411 + L1MEc LINE L1 1048 1569 -4827 2556 122 44 2 chr3 46178167 46178576 -181346002 + L1MA6 LINE L1 5865 6290 -10 967 275 106 32 chr3 46178576 46178589 -181345989 + L1MEc LINE L1 1569 1580 -4816 2338 97 0 3 chr3 46178589 46178889 -181345689 - AluSg SINE Alu -11 299 1 967 275 106 32 chr3 46178889 46179020 -181345558 + L1MEc LINE L1 1580 1809 -4587 2117 106 17 0 chr3 46179252 46179544 -181345034 + AluSp SINE Alu 1 297 -16 1758 169 3 10 chr3 46179556 46179852 -181344726 + AluJo SINE Alu 1 294 -18 1629 194 0 7 chr3 46179978 46180261 -181344317 - AluJb SINE Alu -25 287 7 491 310 61 18 chr3 46180373 46180602 -181343976 - HAL1 LINE L1 -1821 686 448 1116 265 102 8 chr3 46180638 46181000 -181343578 - HAL1 LINE L1 -2109 398 3 2207 293 120 27 chr3 46181201 46182600 -181341978 + L1ME LINE L1 4 1433 -4698 375 247 137 6 chr3 46183275 46183457 -181341121 + L1ME LINE L1 5241 5446 -715 288 303 11 0 chr3 46183481 46183570 -181341008 + L1ME LINE L1 5521 5610 -543 725 239 120 5 chr3 46183765 46183974 -181340604 + MIR SINE MIR 20 252 -10 215 185 15 31 chr3 46185108 46185173 -181339405 + (TG)n Simple_repeat Simple_repeat 1 64 0 298 154 0 77 chr3 46185812 46185890 -181338688 - MIR SINE MIR -31 231 160 2298 94 0 0 chr3 46185985 46186273 -181338305 - AluSq SINE Alu -25 288 1 180 204 122 82 chr3 46188805 46188903 -181335675 - MER5A DNA MER1_type -25 164 63 251 188 21 0 chr3 46192174 46192222 -181332356 - Charlie1 DNA MER1_type 0 2761 2713 603 241 126 11 chr3 46192271 46192462 -181332116 - Charlie1 DNA MER1_type -2548 213 1 555 301 0 18 chr3 46192482 46192648 -181331930 - MIR SINE MIR -24 238 76 322 213 40 0 chr3 46192746 46192821 -181331757 - MER116 DNA Mariner -2 78 1 324 64 0 0 chr3 46195554 46195601 -181328977 + (TTA)n Simple_repeat Simple_repeat 2 48 0 225 189 0 0 chr3 46196594 46196631 -181327947 - LTR39 LTR ERV1 -385 398 362 216 0 0 0 chr3 46197757 46197781 -181326797 + (T)n Simple_repeat Simple_repeat 1 24 0 30 0 0 0 chr3 46203254 46203284 -181321294 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr3 46204731 46204757 -181319821 + AT_rich Low_complexity Low_complexity 1 26 0 357 24 0 0 chr3 46204824 46204866 -181319712 + (CA)n Simple_repeat Simple_repeat 2 43 0 234 247 26 26 chr3 46205654 46205731 -181318847 - MER5B DNA MER1_type -2 176 100 207 308 0 46 chr3 46206145 46206210 -181318368 - L3 LINE CR1 -19 1558 1497 191 218 91 0 chr3 46206365 46206420 -181318158 - MIR3 SINE MIR -39 169 110 196 315 0 0 chr3 46206535 46206589 -181317989 + L2 LINE L2 3242 3295 -18 227 128 51 0 chr3 46206676 46206715 -181317863 - MLT1K LTR MaLR 0 588 548 2244 107 10 0 chr3 46206946 46207237 -181317341 - AluSx SINE Alu -15 297 4 437 234 23 23 chr3 46207670 46207798 -181316780 - MIR SINE MIR -8 254 127 1511 148 37 61 chr3 46207799 46208096 -181316482 + AluJo SINE Alu 5 294 -18 434 281 94 8 chr3 46208870 46208998 -181315580 + L2 LINE L2 3134 3272 0 283 251 102 124 chr3 46210103 46210328 -181314250 - L2 LINE L2 -10 3303 3074 1815 161 31 0 chr3 46210328 46210614 -181313964 + AluJb SINE Alu 1 295 -17 283 251 102 124 chr3 46210614 46210879 -181313699 - L2 LINE L2 -239 3074 2824 768 194 0 0 chr3 46211678 46211807 -181312771 - FLAM_A SINE Alu -1 132 4 260 382 43 51 chr3 46212049 46212400 -181312178 + L1MEd LINE L1 322 669 -5450 1099 162 4 73 chr3 46213779 46213953 -181310625 - AluSg/x SINE Alu -10 300 144 2240 101 13 0 chr3 46213953 46214259 -181310319 - AluSx SINE Alu -2 310 1 1099 162 4 73 chr3 46214259 46214318 -181310260 - AluSg/x SINE Alu -166 144 83 638 242 0 0 chr3 46214318 46214438 -181310140 - FRAM SINE Alu -62 114 1 22 0 0 0 chr3 46214438 46214460 -181310118 + AT_rich Low_complexity Low_complexity 1 22 0 494 239 60 96 chr3 46214515 46214849 -181309729 - L1MC4 LINE L1 -126 7916 7595 807 212 0 38 chr3 46214926 46215110 -181309468 + MER5B DNA MER1_type 2 178 0 1687 193 10 3 chr3 46216122 46216412 -181308166 + AluJo SINE Alu 1 292 -20 2165 109 7 3 chr3 46216464 46216768 -181307810 - AluSg SINE Alu -5 305 1 1249 223 60 34 chr3 46216960 46217426 -181307152 - L1MC5 LINE L1 -114 7847 7370 30 0 0 24 chr3 46217487 46217514 -181307064 + AT_rich Low_complexity Low_complexity 1 28 -12 760 80 0 0 chr3 46217514 46217614 -181306964 - HY3 scRNA scRNA -1 100 1 30 0 0 24 chr3 46217614 46217627 -181306951 + AT_rich Low_complexity Low_complexity 28 40 0 1674 112 78 58 chr3 46217705 46218000 -181306578 + AluSx SINE Alu 1 301 -11 1167 95 0 0 chr3 46218071 46218218 -181306360 + AluSg/x SINE Alu 152 298 -12 305 283 91 98 chr3 46219115 46219401 -181305177 - L2 LINE L2 -1 3271 2988 2250 93 6 10 chr3 46219883 46220194 -181304384 + AluSg SINE Alu 1 310 0 1629 226 83 22 chr3 46221487 46222693 -181301885 + L1MC4 LINE L1 6698 8037 -5 51 31 0 0 chr3 46222693 46222758 -181301820 + AT_rich Low_complexity Low_complexity 1 65 0 184 381 12 0 chr3 46223288 46223372 -181301206 + L2 LINE L2 2604 2688 -626 420 314 146 0 chr3 46223717 46223937 -181300641 + MIR SINE MIR 11 262 0 231 175 18 18 chr3 46224661 46224718 -181299860 - HAL1b LINE L1 -545 803 747 1439 211 0 18 chr3 46224828 46225113 -181299465 - AluJo SINE Alu -21 291 12 738 300 36 4 chr3 46225128 46225378 -181299200 + MER102a DNA MER1_type 70 327 -3 227 282 90 0 chr3 46225635 46225713 -181298865 - HAL1 LINE L1 -571 1936 1852 223 182 0 23 chr3 46225713 46225757 -181298821 + CT-rich Low_complexity Low_complexity 4 46 0 626 288 220 14 chr3 46225757 46226394 -181298184 - L2 LINE L2 -5 3308 2526 606 250 108 17 chr3 46226397 46226629 -181297949 - L2 LINE L2 -1087 2227 1975 2080 130 3 7 chr3 46226796 46227089 -181297489 - AluSx SINE Alu -20 292 1 328 286 27 18 chr3 46227091 46227203 -181297375 - HAL1 LINE L1 -764 1743 1631 195 139 0 0 chr3 46228196 46228232 -181296346 + (TA)n Simple_repeat Simple_repeat 2 37 0 4667 186 124 14 chr3 46228386 46229531 -181295047 - L1MC4 LINE L1 -1 8041 6771 431 322 83 15 chr3 46230724 46230929 -181293649 - MIR SINE MIR -6 256 38 183 263 0 0 chr3 46232744 46232782 -181291796 - MIR SINE MIR -71 191 154 222 211 267 11 chr3 46232828 46232918 -181291660 - MIR SINE MIR -66 142 30 1940 104 14 0 chr3 46234505 46234808 -181289770 - AluSp SINE Alu 0 307 1 2121 95 3 10 chr3 46235374 46235670 -181288908 - AluSx SINE Alu -13 299 6 881 190 0 12 chr3 46236466 46236629 -181287949 - FRAM SINE Alu -19 157 1 479 259 170 0 chr3 46237105 46237240 -181287338 - MIR SINE MIR -15 247 90 1969 146 0 3 chr3 46237665 46237973 -181286605 + AluJb SINE Alu 1 307 -5 189 0 0 0 chr3 46238727 46238748 -181285830 + (T)n Simple_repeat Simple_repeat 1 21 0 188 0 74 0 chr3 46239475 46239502 -181285076 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 335 246 132 97 chr3 46240866 46241208 -181283370 - L1MC4 LINE L1 -2 8040 7687 1839 136 11 3 chr3 46241351 46241638 -181282940 - AluSx SINE Alu -18 294 6 842 287 201 52 chr3 46241727 46242529 -181282049 - L3 LINE CR1 -50 1527 607 189 0 0 0 chr3 46242618 46242639 -181281939 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1524 165 11 22 chr3 46242646 46242919 -181281659 - AluJo SINE Alu -30 282 13 261 245 208 30 chr3 46243110 46243292 -181281286 + MIR SINE MIR 43 254 -8 22 0 0 0 chr3 46243662 46243684 -181280894 + AT_rich Low_complexity Low_complexity 1 22 0 2556 26 3 7 chr3 46243684 46243988 -181280590 - L1PA5 LINE L1 -7 6147 5845 320 340 56 6 chr3 46245161 46245323 -181279255 + MIR3 SINE MIR 30 199 -9 679 231 30 98 chr3 46246454 46246688 -181277890 + MIR SINE MIR 19 236 -26 2395 189 64 106 chr3 46246717 46247139 -181277439 - L1MC4 LINE L1 -1 8041 7672 1973 131 34 0 chr3 46247139 46247437 -181277141 - AluSx SINE Alu -4 308 1 2395 189 64 106 chr3 46247437 46247886 -181276692 - L1MC4 LINE L1 -370 7672 7206 1268 160 26 9 chr3 46247917 46248148 -181276430 - L1MC4 LINE L1 -1078 6964 6730 180 163 0 0 chr3 46249361 46249404 -181275174 + T-rich Low_complexity Low_complexity 1 43 0 186 324 122 0 chr3 46249904 46249978 -181274600 + L2 LINE L2 2521 2603 -711 1005 195 29 65 chr3 46250251 46250559 -181274019 + AluSx SINE Alu 2 298 -4 281 308 72 32 chr3 46250576 46250797 -181273781 + L1M4 LINE L1 4912 5141 -1005 834 93 0 0 chr3 46250840 46250948 -181273630 + AluY SINE Alu 1 108 -203 1369 207 7 10 chr3 46251044 46251344 -181273234 - AluJb SINE Alu -13 299 1 246 335 32 100 chr3 46251839 46252120 -181272458 + L2 LINE L2 2995 3256 -16 195 226 24 95 chr3 46355560 46355644 -181168934 + MIR3 SINE MIR 109 186 -22 567 107 0 0 chr3 46356040 46356124 -181168454 + (GAAA)n Simple_repeat Simple_repeat 3 86 0 192 40 0 0 chr3 46356126 46356151 -181168427 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 2417 94 3 0 chr3 46356188 46356497 -181168081 - AluSp SINE Alu -3 310 1 24 67 0 0 chr3 46356542 46356587 -181167991 + AT_rich Low_complexity Low_complexity 1 45 0 264 284 172 0 chr3 46356683 46356751 -181167827 - MIR3 SINE MIR -36 172 117 5272 128 23 22 chr3 46356751 46357533 -181167045 + LTR39 LTR ERV1 1 783 0 264 284 172 0 chr3 46357533 46357580 -181166998 - MIR3 SINE MIR -91 117 37 1548 282 86 18 chr3 46357681 46358241 -181166337 + ERVL LTR ERVL 4364 4961 -803 719 276 26 62 chr3 46358232 46358572 -181166006 + ERVL LTR ERVL 5069 5396 -368 * 559 298 68 16 chr3 46358939 46359158 -181165420 + LTR33A LTR ERVL 37 244 -279 1183 123 37 0 chr3 46359734 46359896 -181164682 + AluSx SINE Alu 1 168 -144 251 227 0 0 chr3 46360028 46360072 -181164506 - LTR16A1 LTR ERVL -2 455 412 242 79 26 0 chr3 46360093 46360131 -181164447 - MLT1J LTR MaLR -51 460 422 2121 105 0 0 chr3 46360209 46360486 -181164092 - AluSx SINE Alu -24 288 12 1067 236 21 52 chr3 46360491 46360818 -181163760 - LTR16A1 LTR ERVL -54 403 87 840 240 16 55 chr3 46360879 46361041 -181163537 - L1MEc LINE L1 -4603 2004 1853 2087 123 3 3 chr3 46361041 46361363 -181163215 - AluSx SINE Alu 0 322 1 840 240 16 55 chr3 46361363 46361453 -181163125 - L1MEc LINE L1 -4754 1853 1761 1688 208 8 38 chr3 46361459 46361825 -181162753 + MLT1A1 LTR MaLR 11 365 0 723 230 160 13 chr3 46361825 46362138 -181162440 - L1MEc LINE L1 -4852 1574 1216 * 2805 256 93 23 chr3 46362135 46362997 -181161581 - L1MEc LINE L1 -5333 1274 474 2279 85 0 0 chr3 46362997 46363304 -181161274 + AluY SINE Alu 1 307 0 4605 131 39 29 chr3 46363312 46364032 -181160546 + LTR8A LTR ERV1 1 727 0 2805 256 93 23 chr3 46364032 46364120 -181160458 - L1MEc LINE L1 -6139 468 247 802 301 55 4 chr3 46364441 46364677 -181159901 + MIR SINE MIR 10 257 -5 652 344 21 18 chr3 46364926 46365208 -181159370 + LTR16C LTR ERVL 147 429 -62 187 345 0 0 chr3 46365292 46365350 -181159228 + MER5B DNA MER1_type 1 58 -120 1212 141 136 93 chr3 46365358 46365506 -181159072 - MER92B LTR ERV1 -1 635 495 1811 192 24 27 chr3 46365506 46365876 -181158702 - MER93b LTR ERV1 -4 369 1 1212 141 136 93 chr3 46365876 46366103 -181158475 - MER92B LTR ERV1 -141 495 244 643 190 7 49 chr3 46366100 46366242 -181158336 - MER92B LTR ERV1 -499 137 2 * 4569 127 70 7 chr3 46366281 46366957 -181157621 + MER72 LTR ERV1 5 722 0 670 149 24 106 chr3 46366971 46367061 -181157517 + L1MC5 LINE L1 7499 7564 -397 1955 147 16 7 chr3 46367061 46367367 -181157211 + AluJb SINE Alu 2 310 -2 670 149 24 106 chr3 46367367 46367484 -181157094 + L1MC5 LINE L1 7564 7689 -272 * 830 197 62 59 chr3 46367467 46367757 -181156821 + L1MC5 LINE L1 7635 7925 -36 2438 87 0 0 chr3 46368104 46368403 -181156175 - AluSx SINE Alu -13 299 1 3788 121 63 34 chr3 46368493 46368904 -181155674 - MER39 LTR ERV1 0 707 268 4249 105 86 2 chr3 46368904 46369506 -181155072 + MER39B LTR ERV1 1 653 0 3788 121 63 34 chr3 46369506 46369749 -181154829 - MER39 LTR ERV1 -439 268 34 * 4040 121 10 8 chr3 46369747 46370353 -181154225 - MER41B LTR ERV1 -28 607 1 850 112 0 0 chr3 46370446 46370553 -181154025 + U6 snRNA snRNA 1 107 0 23 33 0 0 chr3 46370568 46370598 -181153980 + AT_rich Low_complexity Low_complexity 1 30 0 272 203 34 0 chr3 46370623 46370682 -181153896 - Charlie2 DNA MER1_type -845 2017 1957 292 247 0 0 chr3 46370740 46370813 -181153765 + L1ME3A LINE L1 6083 6155 -15 1405 195 92 45 chr3 46370984 46371424 -181153154 - MER31B LTR ERV1 0 661 7 331 185 210 0 chr3 46371767 46371848 -181152730 - Charlie2 DNA MER1_type -909 1953 1856 427 255 105 69 chr3 46371884 46372131 -181152447 - Charlie2 DNA MER1_type -2591 271 16 1834 214 54 36 chr3 46372992 46373437 -181151141 - MSTB2 LTR MaLR 0 457 5 782 298 37 24 chr3 46373615 46373974 -181150604 - L1MC/D LINE L1 -743 5403 5215 23 0 0 0 chr3 46375049 46375072 -181149506 + AT_rich Low_complexity Low_complexity 1 23 0 1990 152 0 13 chr3 46375699 46376051 -181148527 + AluSx SINE Alu 1 312 0 25 31 0 0 chr3 46376772 46376804 -181147774 + AT_rich Low_complexity Low_complexity 1 32 0 442 267 85 36 chr3 46377185 46377329 -181147249 - MIR SINE MIR 0 262 108 2157 131 0 3 chr3 46377329 46377642 -181146936 + AluSx SINE Alu 1 312 0 442 267 85 36 chr3 46377642 46377662 -181146916 - MIR SINE MIR -154 108 90 232 295 123 41 chr3 46377916 46378038 -181146540 - MIR SINE MIR -80 182 51 640 128 50 2 chr3 46378159 46378342 -181146236 - MER2 DNA MER2_type 0 345 128 2267 113 3 0 chr3 46378346 46378648 -181145930 + AluSg SINE Alu 5 307 -3 8983 139 28 13 chr3 46378660 46380002 -181144576 + L1MA3 LINE L1 3738 5059 -1246 1648 161 0 57 chr3 46380002 46380107 -181144471 - 7SLRNA srpRNA srpRNA 0 320 211 2454 69 0 0 chr3 46380107 46380397 -181144181 - AluY SINE Alu -20 291 2 1648 161 0 57 chr3 46380397 46380590 -181143988 - 7SLRNA srpRNA srpRNA -109 211 39 8983 139 28 13 chr3 46380590 46380601 -181143977 + L1MA3 LINE L1 5059 5068 -1237 2097 139 0 3 chr3 46380601 46380904 -181143674 - AluSx SINE Alu -10 302 1 8983 139 28 13 chr3 46380904 46382096 -181142482 + L1MA3 LINE L1 5068 6305 0 855 162 7 0 chr3 46382105 46382241 -181142337 - MER2 DNA MER2_type -208 137 1 939 140 12 30 chr3 46382577 46382741 -181141837 - MLT1F1 LTR MaLR 0 567 407 202 194 0 0 chr3 46383539 46383575 -181141003 + CT-rich Low_complexity Low_complexity 3 38 0 416 242 30 42 chr3 46383597 46383762 -181140816 - ERVL LTR ERVL -779 4985 4823 630 266 20 100 chr3 46383845 46384353 -181140225 + L1MA5 LINE L1 370 836 -6373 5729 180 31 38 chr3 46384581 46385255 -181139323 + L1MA5 LINE L1 1720 2397 -4811 2430 71 0 13 chr3 46385255 46385563 -181139015 + AluY SINE Alu 1 304 -7 5729 180 31 38 chr3 46385563 46386446 -181138132 + L1MA5 LINE L1 2397 3264 -3944 1983 142 3 0 chr3 46386446 46386735 -181137843 + AluSx SINE Alu 1 290 -22 5729 180 31 38 chr3 46386735 46386834 -181137744 + L1MA5 LINE L1 3264 3362 -3846 6483 110 9 56 chr3 46386851 46387136 -181137442 + L1MA2 LINE L1 5045 5342 -962 2267 105 13 0 chr3 46387136 46387441 -181137137 + AluSp SINE Alu 3 311 -2 6483 110 9 56 chr3 46387441 46388457 -181136121 + L1MA2 LINE L1 5342 6303 -1 11316 151 46 73 chr3 46388491 46390433 -181134145 + L1MA5 LINE L1 3364 5356 -2006 2051 138 0 0 chr3 46390433 46390724 -181133854 + AluSx SINE Alu 1 291 -21 11316 151 46 73 chr3 46390724 46391187 -181133391 + L1MA5 LINE L1 5356 5830 -1532 1832 170 3 3 chr3 46391187 46391470 -181133108 - AluJb SINE Alu -23 289 7 11316 151 46 73 chr3 46391470 46391581 -181132997 + L1MA5 LINE L1 5830 5942 -1420 253 297 36 14 chr3 46391581 46391719 -181132859 - AluJb SINE Alu -155 147 7 11316 151 46 73 chr3 46391719 46391731 -181132847 + L1MA5 LINE L1 5942 5953 -1409 304 23 0 47 chr3 46391731 46391774 -181132804 + (CCCCCA)n Simple_repeat Simple_repeat 2 42 0 985 158 49 6 chr3 46391774 46391938 -181132640 - FAM SINE Alu -4 171 1 11316 151 46 73 chr3 46391938 46393324 -181131254 + L1MA5 LINE L1 5951 7357 -5 1017 290 66 33 chr3 46393324 46393838 -181130740 + MLT1G1 LTR MaLR 16 595 0 888 324 113 11 chr3 46393841 46394723 -181129855 - ERVL LTR ERVL -1004 4760 3655 348 229 280 6 chr3 46395011 46395168 -181129410 + L2 LINE L2 3114 3313 0 904 136 177 21 chr3 46395346 46395610 -181128968 - MER33 DNA MER1_type -1 362 18 2546 57 23 6 chr3 46395826 46396175 -181128403 - L1PA13 LINE L1 0 6163 5809 1481 44 0 6 chr3 46397540 46397722 -181126856 + L1PA6 LINE L1 5963 6143 -11 189 263 158 18 chr3 46398083 46398140 -181126438 + L2 LINE L2 3207 3271 -1 303 279 175 34 chr3 46398463 46398751 -181125827 + L3 LINE CR1 849 1235 -342 1105 167 32 41 chr3 46398955 46399176 -181125402 - MER20 DNA MER1_type 0 219 1 894 126 0 0 chr3 46399381 46399516 -181125062 - MSTA LTR MaLR -9 419 285 2287 92 7 0 chr3 46399903 46400198 -181124380 + AluSx SINE Alu 1 297 -15 386 241 11 11 chr3 46400613 46400700 -181123878 + L2 LINE L2 3226 3312 -1 240 205 90 0 chr3 46400826 46400912 -181123666 - L1ME LINE L1 -304 5817 5715 972 253 149 62 chr3 46400939 46401685 -181122893 + HAL1 LINE L1 1111 1921 -586 660 285 94 25 chr3 46401746 46402192 -181122386 + HAL1 LINE L1 2027 2503 -4 264 175 103 41 chr3 46402210 46402307 -181122271 - L1ME4a LINE L1 -18 6103 6001 2228 108 7 0 chr3 46402311 46402617 -181121961 - AluSc SINE Alu -1 308 1 21 57 0 0 chr3 46402668 46402703 -181121875 + AT_rich Low_complexity Low_complexity 1 35 0 839 217 0 6 chr3 46402799 46402960 -181121618 - FRAM SINE Alu -16 160 1 516 278 113 90 chr3 46403352 46403493 -181121085 - L2 LINE L2 -4 3309 3173 2222 123 0 0 chr3 46403493 46403795 -181120783 + AluSg SINE Alu 1 302 -8 516 278 113 90 chr3 46403795 46404219 -181120359 - L2 LINE L2 -140 3173 2699 1557 171 90 60 chr3 46404767 46405247 -181119331 - L1MB7 LINE L1 -5 6179 5686 1846 133 56 3 chr3 46405395 46405680 -181118898 + AluSx SINE Alu 1 300 -12 4376 48 45 1 chr3 46405902 46406445 -181118133 - L1PA6 LINE L1 -297 5857 5277 201 39 0 0 chr3 46406445 46406471 -181118107 + (TTG)n Simple_repeat Simple_repeat 3 28 0 4376 48 45 1 chr3 46406471 46406783 -181117795 - L1PA6 LINE L1 -877 5277 4980 533 301 101 32 chr3 46406960 46407343 -181117235 - L2 LINE L2 -182 3090 2607 1765 171 3 30 chr3 46408166 46408471 -181116107 + AluJb SINE Alu 1 297 -15 336 237 156 54 chr3 46408668 46408770 -181115808 - MIR SINE MIR -10 252 162 2238 123 0 3 chr3 46408770 46409080 -181115498 - AluSx SINE Alu -3 309 1 336 237 156 54 chr3 46409080 46409163 -181115415 - MIR SINE MIR -100 162 48 569 211 157 54 chr3 46410456 46410698 -181113880 - L1ME3A LINE L1 -8 6162 5896 253 278 104 42 chr3 46411598 46411742 -181112836 + L2 LINE L2 3114 3266 -6 205 367 0 0 chr3 46412008 46412098 -181112480 + G-rich Low_complexity Low_complexity 1 90 0 24 32 0 0 chr3 46413045 46413076 -181111502 + AT_rich Low_complexity Low_complexity 1 31 0 296 256 39 0 chr3 46413078 46413156 -181111422 - MIR SINE MIR 0 262 182 305 211 111 0 chr3 46413236 46413326 -181111252 - L1MB7 LINE L1 -504 5617 5518 26 0 0 0 chr3 46413835 46413861 -181110717 + AT_rich Low_complexity Low_complexity 1 26 0 1292 171 25 96 chr3 46413907 46414229 -181110349 - AluJb SINE Alu -9 303 5 22 56 0 0 chr3 46414798 46414834 -181109744 + AT_rich Low_complexity Low_complexity 1 36 0 3731 27 27 0 chr3 46415650 46416101 -181108477 - L1PA3 LINE L1 0 6155 5693 201 262 49 0 chr3 46416122 46416183 -181108395 + MIR SINE MIR 118 181 -81 788 195 69 0 chr3 46418900 46419074 -181105504 - MER5A DNA MER1_type 0 189 4 198 0 0 0 chr3 46420146 46420168 -181104410 + (T)n Simple_repeat Simple_repeat 1 22 0 251 160 0 0 chr3 46420588 46420638 -181103940 + L1ME LINE L1 5388 5437 -684 2306 90 0 10 chr3 46420652 46420951 -181103627 - AluY SINE Alu -15 296 1 1174 156 0 0 chr3 46423344 46423568 -181101010 - AluSg/x SINE Alu 0 328 105 1013 0 9 0 chr3 46423676 46423791 -181100787 + AluYa5/8 SINE Alu 184 299 -12 704 190 20 100 chr3 46424805 46425005 -181099573 - MER20 DNA MER1_type -7 212 29 308 342 127 47 chr3 46425271 46425786 -181098792 - L2 LINE L2 -1 3271 2718 23 0 0 0 chr3 46425886 46425909 -181098669 + AT_rich Low_complexity Low_complexity 1 23 0 242 318 40 48 chr3 46426721 46426847 -181097731 + MIR SINE MIR 18 142 -120 775 296 115 71 chr3 46426899 46427021 -181097557 - L2 LINE L2 -684 2630 2515 2147 120 0 0 chr3 46427021 46427322 -181097256 - AluSg SINE Alu -9 301 1 775 296 115 71 chr3 46427322 46428146 -181096432 - L2 LINE L2 -799 2515 1642 182 262 71 36 chr3 46428280 46428364 -181096214 - L2 LINE L2 -1897 1417 1331 336 335 173 15 chr3 46428386 46428652 -181095926 - L2 LINE L2 -2667 647 340 23 0 0 0 chr3 46428710 46428733 -181095845 + AT_rich Low_complexity Low_complexity 1 23 0 229 169 0 62 chr3 46429129 46429194 -181095384 + A-rich Low_complexity Low_complexity 1 61 0 2573 48 0 0 chr3 46429688 46429983 -181094595 + AluY SINE Alu 1 295 -16 274 319 58 14 chr3 46430671 46430809 -181093769 + MARNA DNA Mariner 163 306 -280 265 320 13 0 chr3 46431375 46431450 -181093128 + MIR SINE MIR 32 107 -101 310 149 0 0 chr3 46432001 46432048 -181092530 + Alu SINE Alu 2 48 -254 1411 182 0 9 chr3 46432139 46432370 -181092208 + AluJb SINE Alu 64 292 -20 183 327 127 20 chr3 46433758 46433908 -181090670 + MIR3 SINE MIR 26 191 -17 24 0 0 0 chr3 46434250 46434274 -181090304 + AT_rich Low_complexity Low_complexity 1 24 0 2118 262 99 34 chr3 46434339 46435518 -181089060 - L1ME4a LINE L1 -86 6035 4777 1743 167 23 23 chr3 46436631 46436936 -181087642 + AluJo SINE Alu 1 305 -7 25 0 0 0 chr3 46437445 46437470 -181087108 + AT_rich Low_complexity Low_complexity 1 25 0 387 217 57 63 chr3 46437472 46437618 -181086960 - L1MC5 LINE L1 -36 7925 7779 279 0 0 0 chr3 46437618 46437649 -181086929 + (CA)n Simple_repeat Simple_repeat 2 32 0 387 217 57 63 chr3 46437649 46437677 -181086901 - L1MC5 LINE L1 -182 7779 7752 413 333 50 17 chr3 46437788 46437968 -181086610 - L2 LINE L2 -954 2360 2175 1752 107 126 19 chr3 46438107 46438377 -181086201 - AluSx SINE Alu -13 299 1 305 317 40 0 chr3 46443939 46444040 -181080538 + MIR3 SINE MIR 57 161 -47 216 253 77 16 chr3 46444792 46444916 -181079662 + MIR SINE MIR 32 165 -62 469 291 63 6 chr3 46446061 46446236 -181078342 + MIR SINE MIR 23 207 -55 1906 142 56 0 chr3 46446743 46447067 -181077511 - MER7A DNA MER2_type 0 346 7 1059 252 90 34 chr3 46450425 46450978 -181073600 + L2 LINE L2 2698 3301 -12 997 182 0 0 chr3 46452971 46453130 -181071448 - AluJo SINE Alu -83 229 71 237 282 51 0 chr3 46453130 46453208 -181071370 + Charlie8 DNA MER1_type 135 216 -2201 600 204 62 31 chr3 46453272 46453502 -181071076 + MER106B DNA MER1_type 1 1056 -3 258 301 14 0 chr3 46454361 46454434 -181070144 - MIR3 SINE MIR -54 154 81 399 248 40 25 chr3 46454964 46455270 -181069308 - LTR16A LTR ERVL -6 444 71 319 276 83 50 chr3 46455385 46455566 -181069012 - L1ME4a LINE L1 -257 5864 5678 180 355 55 9 chr3 46456850 46456960 -181067618 - L2 LINE L2 -1408 1906 1792 2090 140 0 19 chr3 46457069 46457383 -181067195 + AluJo SINE Alu 5 312 0 414 259 124 79 chr3 46457895 46458171 -181066407 - L1 LINE L1 -2760 3386 3140 1450 204 46 25 chr3 46458171 46458456 -181066122 - AluJo SINE Alu -21 291 1 414 259 124 79 chr3 46458456 46458555 -181066023 - L1 LINE L1 -3006 3140 3047 820 146 15 36 chr3 46458556 46458693 -181065885 - AluJo SINE Alu -178 134 1 376 298 41 41 chr3 46458695 46458940 -181065638 - L1 LINE L1 -3060 3086 2842 864 250 92 21 chr3 46459258 46459697 -181064881 - MLT1J LTR MaLR -7 504 1 337 309 144 17 chr3 46460051 46460232 -181064346 + MIR SINE MIR 49 252 -10 267 79 0 0 chr3 46461318 46461356 -181063222 + (A)n Simple_repeat Simple_repeat 1 38 0 539 226 23 23 chr3 46461418 46461551 -181063027 + MER5B DNA MER1_type 44 176 -2 239 257 27 27 chr3 46463509 46463583 -181060995 + MIR SINE MIR 65 138 -70 2164 134 0 7 chr3 46463712 46464019 -181060559 + AluSx SINE Alu 1 305 -7 352 338 42 8 chr3 46464794 46464995 -181059583 + L1ME LINE L1 843 1045 -1396 321 324 79 79 chr3 46465153 46465493 -181059085 + L1MC4a LINE L1 4894 5233 -913 371 272 144 70 chr3 46465538 46466060 -181058518 + L1MC4a LINE L1 5315 5884 -1924 2549 84 3 0 chr3 46466060 46466371 -181058207 + AluSx SINE Alu 1 312 0 371 272 144 70 chr3 46466371 46466417 -181058161 + L1MC4a LINE L1 5884 5925 -1883 481 237 205 26 chr3 46467367 46467523 -181057055 - MER5A DNA MER1_type 0 189 6 507 264 56 14 chr3 46467706 46467850 -181056728 - L2 LINE L2 -6 3307 3158 414 0 0 0 chr3 46468173 46468219 -181056359 + (CA)n Simple_repeat Simple_repeat 2 47 0 239 130 0 22 chr3 46468324 46468370 -181056208 + (CA)n Simple_repeat Simple_repeat 2 46 0 215 269 82 68 chr3 46468516 46468735 -181055843 - L2 LINE L2 -64 3249 3028 291 362 112 13 chr3 46469439 46469663 -181054915 + MIR SINE MIR 16 261 -1 257 197 0 49 chr3 46471611 46471672 -181052906 + L2 LINE L2 3256 3313 0 263 325 152 0 chr3 46473068 46473219 -181051359 - MIR SINE MIR -1 261 88 1984 129 73 66 chr3 46473229 46473654 -181050924 - MSTC LTR MaLR 0 428 1 1770 148 11 0 chr3 46473688 46473972 -181050606 - MER7A DNA MER2_type -61 285 1 189 222 56 37 chr3 46473980 46474034 -181050544 - MIR SINE MIR -133 75 21 244 313 54 84 chr3 46475403 46475700 -181048878 - L2 LINE L2 0 3272 2985 287 195 244 0 chr3 46475783 46475865 -181048713 - L2 LINE L2 -767 2547 2446 826 248 67 29 chr3 46477323 46477467 -181047111 + MIR SINE MIR 16 174 -88 2399 70 3 13 chr3 46477467 46477766 -181046812 + AluY SINE Alu 1 296 -15 826 248 67 29 chr3 46477766 46477859 -181046719 + MIR SINE MIR 174 262 0 220 304 43 11 chr3 46478468 46478560 -181046018 + MIR SINE MIR 35 129 -79 476 291 141 0 chr3 46482601 46482807 -181041771 - MIR SINE MIR -21 241 7 277 164 179 0 chr3 46487361 46487428 -181037150 - MER116 DNA Mariner 0 80 2 739 173 25 25 chr3 46487517 46487679 -181036899 + MER106B DNA MER1_type 898 1059 0 278 153 17 0 chr3 46488713 46488772 -181035806 + (CA)n Simple_repeat Simple_repeat 2 61 0 348 64 0 0 chr3 46488895 46488942 -181035636 + (TG)n Simple_repeat Simple_repeat 2 48 0 219 320 74 58 chr3 46490129 46490438 -181034140 + L2 LINE L2 2184 2497 -817 582 236 188 19 chr3 46490591 46490799 -181033779 + MIR SINE MIR 17 259 -3 775 204 69 99 chr3 46490814 46491177 -181033401 + L1ME2 LINE L1 5811 6162 -2 200 342 184 13 chr3 46491205 46491439 -181033139 + L2 LINE L2 2615 2888 -426 1175 193 114 24 chr3 46491579 46491911 -181032667 + MLT1A2 LTR MaLR 1 362 -12 432 293 30 8 chr3 46493658 46493791 -181030787 - L2 LINE L2 0 3272 3137 208 292 56 0 chr3 46493989 46494061 -181030517 - L2 LINE L2 -541 2773 2698 25 0 0 0 chr3 46494650 46494675 -181029903 + GC_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr3 46494941 46494967 -181029611 + GC_rich Low_complexity Low_complexity 1 26 0 234 245 38 38 chr3 46495585 46495691 -181028887 - MIR3 SINE MIR -40 168 63 209 318 134 22 chr3 46496198 46496377 -181028201 + L2 LINE L2 2919 3117 -155 196 323 92 23 chr3 46496689 46496819 -181027759 + L2 LINE L2 2738 2876 -438 2399 86 0 10 chr3 46496877 46497180 -181027398 - AluSx SINE Alu -12 300 1 229 290 0 0 chr3 46497429 46497491 -181027087 + L2 LINE L2 3155 3216 -56 260 276 115 0 chr3 46497929 46498016 -181026562 + MIR3 SINE MIR 104 200 -8 592 279 72 60 chr3 46498597 46498700 -181025878 + L1ME3 LINE L1 5423 5523 -639 1935 144 0 0 chr3 46498700 46498963 -181025615 - AluSq SINE Alu -50 263 1 592 279 72 60 chr3 46498963 46499274 -181025304 + L1ME3 LINE L1 5523 5842 -320 454 191 45 0 chr3 46499274 46499363 -181025215 + MSTC LTR MaLR 1 93 -335 699 223 97 15 chr3 46499368 46499574 -181025004 + L1ME3 LINE L1 5910 6132 -30 1839 235 153 59 chr3 46499768 46500475 -181024103 - MER21B LTR ERV1 -80 783 11 711 191 12 6 chr3 46500542 46500704 -181023874 - L1M4 LINE L1 -1098 5048 4886 959 198 11 0 chr3 46501206 46501393 -181023185 + MER5A DNA MER1_type 1 189 0 837 262 110 22 chr3 46501449 46501819 -181022759 - L1ME LINE L1 -420 5701 5297 659 327 104 40 chr3 46501867 46501919 -181022659 - L1ME LINE L1 -935 5211 5164 1730 158 3 30 chr3 46501919 46502216 -181022362 - AluJo SINE Alu -9 303 15 659 327 104 40 chr3 46502216 46502786 -181021792 - L1ME LINE L1 -982 5164 4549 595 161 105 32 chr3 46502788 46502912 -181021666 - AluJo SINE Alu -178 134 2 2299 106 0 10 chr3 46502965 46503100 -181021478 + AluSq SINE Alu 1 136 -177 2519 82 0 0 chr3 46503100 46503405 -181021173 + AluSq SINE Alu 1 305 -8 2299 106 0 10 chr3 46503405 46503571 -181021007 + AluSq SINE Alu 136 299 -14 2015 147 3 0 chr3 46503589 46503882 -181020696 + AluJo SINE Alu 10 303 -9 1701 179 0 4 chr3 46503904 46504183 -181020395 - AluJo SINE Alu -6 306 29 1054 141 53 103 chr3 46504497 46504625 -181019953 - MER4C LTR ERV1 -215 250 140 2192 119 0 6 chr3 46504625 46504936 -181019642 - AluSg SINE Alu -1 309 1 1054 141 53 103 chr3 46504936 46505070 -181019508 - MER4C LTR ERV1 -325 140 1 623 291 76 16 chr3 46505163 46505414 -181019164 + MER90 LTR ERV1 197 462 -152 296 296 41 10 chr3 46505429 46505527 -181019051 + LTR65 LTR ERV1 553 653 -16 1670 155 99 18 chr3 46505584 46505936 -181018642 - MLT1B LTR MaLR -10 416 4 479 331 43 11 chr3 46506336 46506408 -181018170 - MIR SINE MIR -40 222 154 1986 85 39 72 chr3 46506408 46506713 -181017865 - AluSx SINE Alu -17 295 1 479 331 43 11 chr3 46506713 46506824 -181017754 - MIR SINE MIR -108 154 33 225 0 0 0 chr3 46507582 46507607 -181016971 + (CA)n Simple_repeat Simple_repeat 2 26 0 1926 138 0 3 chr3 46508938 46509228 -181015350 - AluYb8 SINE Alu -29 289 1 372 119 15 0 chr3 46509228 46509295 -181015283 + MSTD LTR MaLR 327 394 -2 235 328 119 0 chr3 46510281 46510415 -181014163 - MIR SINE MIR -27 235 86 2427 72 7 0 chr3 46511291 46511584 -181012994 - AluY SINE Alu -16 295 1 2052 277 103 54 chr3 46511592 46512680 -181011898 - L2 LINE L2 -779 2535 1395 459 228 135 50 chr3 46513712 46513993 -181010585 + L1ME4a LINE L1 5661 5965 -156 21 0 0 0 chr3 46513993 46514014 -181010564 + AT_rich Low_complexity Low_complexity 1 21 0 233 281 28 62 chr3 46514023 46514201 -181010377 - L1MC/D LINE L1 -1914 5894 5723 5133 164 6 16 chr3 46514204 46515164 -181009414 - L1MA7 LINE L1 -4 6287 5337 376 307 49 18 chr3 46515165 46515328 -181009250 + L1ME4a LINE L1 5951 6118 -3 318 187 0 99 chr3 46515312 46515403 -181009175 + L1ME LINE L1 5347 5428 -693 * 304 331 153 0 chr3 46516553 46516716 -181007862 + MIR3 SINE MIR 14 201 -7 570 224 98 29 chr3 46516807 46517012 -181007566 - MIR SINE MIR 0 262 44 294 245 113 0 chr3 46517535 46517641 -181006937 + L2 LINE L2 2913 3030 -242 300 277 51 28 chr3 46517840 46518017 -181006561 + L1ME LINE L1 5606 5786 -335 220 216 78 0 chr3 46518788 46518839 -181005739 - MIR SINE MIR -91 171 117 253 241 23 23 chr3 46519299 46519386 -181005192 + MLT1K LTR MaLR 180 266 -322 182 354 191 0 chr3 46521045 46521223 -181003355 - MIR SINE MIR -6 256 45 2314 105 0 3 chr3 46521223 46521518 -181003060 - AluSx SINE Alu -18 294 1 651 177 9 0 chr3 46521934 46522047 -181002531 - MER81 DNA DNA 0 114 1 371 309 163 6 chr3 46523134 46523312 -181001266 + MIR SINE MIR 47 252 -10 1680 186 34 29 chr3 46524478 46524864 -180999714 + MLT1B LTR MaLR 1 388 -2 1172 259 121 5 chr3 46525097 46525494 -180999084 + MLT1E2 LTR MaLR 184 626 0 191 143 29 0 chr3 46525752 46525787 -180998791 - MIR SINE MIR -110 152 117 249 269 9 111 chr3 46525847 46525920 -180998658 + MIR SINE MIR 53 113 -149 2318 112 0 0 chr3 46525920 46526223 -180998355 + AluSx SINE Alu 1 303 -9 249 269 9 111 chr3 46526223 46526257 -180998321 + MIR SINE MIR 113 149 -113 225 306 66 31 chr3 46527057 46527253 -180997325 - L2 LINE L2 -1241 2073 1871 1963 115 31 3 chr3 46527429 46527715 -180996863 + AluJo SINE Alu 1 294 -18 202 216 0 0 chr3 46527945 46527982 -180996596 - L2 LINE L2 -32 3240 3204 37 39 0 0 chr3 46528001 46528052 -180996526 + AT_rich Low_complexity Low_complexity 1 51 0 1758 240 154 12 chr3 46528290 46528803 -180995775 + MLT1G1 LTR MaLR 1 586 -9 393 307 43 14 chr3 46528809 46528949 -180995629 - L2 LINE L2 -4 3268 3125 556 333 66 5 chr3 46530055 46530253 -180994325 + MER115 DNA AcHobo 175 384 -309 375 333 70 50 chr3 46530379 46530782 -180993796 - L2 LINE L2 -345 2969 2559 2458 165 33 52 chr3 46531670 46532222 -180992356 + MER34B LTR ERV1 11 524 -41 2370 114 7 0 chr3 46532232 46532540 -180992038 + AluSx SINE Alu 1 310 -2 1262 190 34 8 chr3 46533237 46533505 -180991073 + ORSL DNA AcHobo 1 275 0 291 341 56 8 chr3 46534403 46534529 -180990049 - L2 LINE L2 0 3313 3182 1059 249 42 25 chr3 46534579 46534864 -180989714 + MLT1G LTR MaLR 33 322 -268 414 186 0 0 chr3 46534854 46534924 -180989654 + MLT1G LTR MaLR 428 497 -93 * 1136 275 30 42 chr3 46534957 46535604 -180988974 - L2 LINE L2 -126 3187 2534 542 298 107 27 chr3 46536165 46536427 -180988151 + L2 LINE L2 3027 3309 -4 181 286 156 13 chr3 46536457 46536534 -180988044 - L2 LINE L2 0 3272 3185 22 35 0 0 chr3 46536560 46536589 -180987989 + AT_rich Low_complexity Low_complexity 1 29 0 881 42 100 0 chr3 46536646 46536766 -180987812 - MER85 DNA T2_type -7 132 1 314 203 145 0 chr3 46536766 46536835 -180987743 - MIR SINE MIR -66 196 118 677 285 77 55 chr3 46537218 46537597 -180986981 + L2 LINE L2 2921 3307 -6 414 0 0 0 chr3 46537875 46537921 -180986657 + (TG)n Simple_repeat Simple_repeat 1 46 0 314 173 74 62 chr3 46544638 46544719 -180979859 - MIR3 SINE MIR -15 193 112 545 281 60 6 chr3 46545838 46546005 -180978573 - MIR3 SINE MIR -2 206 31 991 78 0 0 chr3 46547680 46547795 -180976783 - AluSx SINE Alu -159 153 39 210 308 23 92 chr3 46548509 46548585 -180975993 + MIR SINE MIR 141 206 -56 2167 112 14 10 chr3 46548585 46548880 -180975698 + AluSx SINE Alu 1 296 -16 210 308 23 92 chr3 46548880 46548933 -180975645 + MIR SINE MIR 206 261 -1 713 205 7 0 chr3 46549082 46549233 -180975345 - MER3 DNA MER1_type 0 209 58 266 226 61 17 chr3 46549970 46550085 -180974493 + L1MC4a LINE L1 5697 5816 -1992 420 248 18 0 chr3 46550131 46550240 -180974338 + L1MC4a LINE L1 5823 5933 -1875 227 373 25 25 chr3 46550551 46550669 -180973909 - MIR SINE MIR -112 150 33 207 385 82 0 chr3 46550709 46550831 -180973747 + L2 LINE L2 3141 3272 0 292 287 128 49 chr3 46552551 46552715 -180971863 - MIR SINE MIR -78 184 8 229 266 0 96 chr3 46552988 46553082 -180971496 + L3b LINE CR1 1189 1273 -310 444 259 46 0 chr3 46553128 46553236 -180971342 + MIR3 SINE MIR 81 193 -15 1844 157 32 0 chr3 46553271 46553551 -180971027 - AluJo SINE Alu -23 289 1 190 262 0 0 chr3 46554870 46554912 -180969666 + MIR SINE MIR 116 157 -105 388 333 0 34 chr3 46554927 46555044 -180969534 + MIR SINE MIR 49 161 -101 362 290 43 37 chr3 46555063 46555225 -180969353 - LTR16B LTR ERVL -8 456 294 752 291 45 9 chr3 46557417 46557640 -180966938 + MIR SINE MIR 5 235 -27 2589 58 0 3 chr3 46557799 46558108 -180966470 - AluY SINE Alu -3 308 1 1609 194 77 139 chr3 46558461 46559242 -180965336 - L1MC4 LINE L1 0 8042 7333 1046 161 28 9 chr3 46559242 46559453 -180965125 + L1MA7 LINE L1 6068 6282 -9 1609 194 77 139 chr3 46559453 46559647 -180964931 - L1MC4 LINE L1 -709 7333 7128 355 288 70 32 chr3 46559659 46559910 -180964668 + LTR16A LTR ERVL 1 260 -190 1948 113 36 10 chr3 46559917 46560218 -180964360 + L1PA15 LINE L1 5856 6164 -1 348 337 82 0 chr3 46560222 46560418 -180964160 - L1MC4a LINE L1 -1109 6699 6488 2252 124 0 3 chr3 46560452 46560758 -180963820 + AluSx SINE Alu 1 305 -7 1116 72 0 0 chr3 46561081 46561233 -180963345 - L1PA15 LINE L1 -147 6018 5867 583 297 92 35 chr3 46561231 46561797 -180962781 + L1MEd LINE L1 380 977 -5142 * 187 309 73 0 chr3 46561933 46561988 -180962590 - L2 LINE L2 -40 3232 3174 474 276 107 10 chr3 46562519 46562715 -180961863 + LTR37A LTR ERV1 47 261 -165 562 247 24 12 chr3 46562723 46562893 -180961685 - L1ME3A LINE L1 -316 5854 5683 248 205 116 62 chr3 46563056 46563168 -180961410 + L1ME3 LINE L1 5961 6078 -84 255 61 0 0 chr3 46564825 46564858 -180959720 + (T)n Simple_repeat Simple_repeat 1 33 0 1533 109 14 0 chr3 46565161 46565372 -180959206 + AluSp SINE Alu 99 312 -1 24 67 0 0 chr3 46565519 46565564 -180959014 + AT_rich Low_complexity Low_complexity 1 45 0 487 188 188 54 chr3 46565583 46565844 -180958734 - L1MC5 LINE L1 -30 7931 7636 355 242 144 30 chr3 46565847 46565979 -180958599 - L1ME4a LINE L1 -218 5903 5757 275 263 338 8 chr3 46566614 46566747 -180957831 + MER5A DNA MER1_type 7 183 -6 195 265 20 0 chr3 46566762 46566811 -180957767 + L2 LINE L2 3252 3301 -12 217 252 142 47 chr3 46567755 46567882 -180956696 + L2 LINE L2 2621 2759 -555 774 255 59 45 chr3 46568100 46568390 -180956188 - LTR40c LTR ERVL -130 335 42 704 283 4 74 chr3 46568961 46569076 -180955502 - MIR SINE MIR 0 262 173 1874 183 3 0 chr3 46569076 46569376 -180955202 - AluJo SINE Alu -11 301 1 704 283 4 74 chr3 46569376 46569518 -180955060 - MIR SINE MIR -89 173 23 253 281 0 0 chr3 46569519 46569576 -180955002 + MER106A DNA MER1_type 3 59 -177 261 188 72 0 chr3 46569585 46569654 -180954924 + MER106B DNA MER1_type 905 978 -81 1496 155 24 24 chr3 46569654 46569685 -180954893 + L1MA2 LINE L1 6001 6031 -273 2411 85 0 0 chr3 46569685 46569980 -180954598 + AluSg SINE Alu 1 295 -15 414 0 0 0 chr3 46569981 46570027 -180954551 + (TA)n Simple_repeat Simple_repeat 1 46 0 1496 155 24 24 chr3 46570027 46570284 -180954294 + L1MA2 LINE L1 6030 6291 -13 1585 170 39 77 chr3 46570636 46571025 -180953553 - MLT1A2 LTR MaLR 0 374 1 1288 191 117 31 chr3 46571241 46571633 -180952945 + LTR37A LTR ERV1 1 426 0 303 267 29 9 chr3 46571708 46571813 -180952765 + L2 LINE L2 2395 2501 -813 1894 200 98 9 chr3 46571817 46572276 -180952302 + MLT1D LTR MaLR 6 505 0 633 284 35 0 chr3 46572280 46572449 -180952129 + L2 LINE L2 2500 2674 -640 757 303 50 7 chr3 46572537 46572837 -180951741 - HERV16 LTR ERVL -4683 313 1 886 236 19 108 chr3 46572837 46573162 -180951416 - LTR16A LTR ERVL 0 450 168 2393 94 0 3 chr3 46573162 46573471 -180951107 - AluSx SINE Alu -4 308 1 886 236 19 108 chr3 46573471 46573561 -180951017 - LTR16A LTR ERVL -282 168 72 289 308 209 6 chr3 46573622 46573794 -180950784 + L2 LINE L2 2687 2893 -421 253 292 83 0 chr3 46573801 46573873 -180950705 - L2 LINE L2 -3 3310 3233 942 136 68 0 chr3 46573892 46574054 -180950524 + MER58A DNA MER1_type 47 219 -5 303 49 0 0 chr3 46574081 46574122 -180950456 + (CA)n Simple_repeat Simple_repeat 2 42 0 1013 215 12 6 chr3 46574146 46574394 -180950184 - MER33 DNA MER1_type -82 242 1 355 191 0 56 chr3 46574397 46574486 -180950092 - L2 LINE L2 -67 3246 3163 616 236 69 54 chr3 46574509 46574712 -180949866 + MER77 LTR ERV1 387 592 -13 185 180 66 16 chr3 46574845 46574906 -180949672 - L2 LINE L2 -370 2902 2839 206 336 8 16 chr3 46574973 46575095 -180949483 + (TTAGGG)n Simple_repeat Simple_repeat 5 125 0 424 268 129 54 chr3 46575937 46576161 -180948417 + HAL1b LINE L1 435 675 -673 2154 108 11 0 chr3 46576421 46576708 -180947870 + AluSx SINE Alu 1 290 -22 319 188 119 0 chr3 46576789 46576890 -180947688 - HAL1 LINE L1 -694 1882 1770 379 238 131 78 chr3 46576898 46577179 -180947399 - L1MEc LINE L1 -865 1711 1360 375 248 90 60 chr3 46577227 46577360 -180947218 + HAL1 LINE L1 816 952 -1555 1192 279 63 12 chr3 46577369 46577796 -180946782 + L2 LINE L2 1199 1647 -1667 2510 56 17 0 chr3 46577998 46578300 -180946278 - AluY SINE Alu -4 307 1 5619 104 20 6 chr3 46578335 46579192 -180945386 + L1PA13 LINE L1 5295 6163 0 1162 0 14 0 chr3 46579646 46579784 -180944794 + (TTTC)n Simple_repeat Simple_repeat 2 141 0 248 324 120 0 chr3 46580279 46580387 -180944191 + L2 LINE L2 3193 3313 0 755 186 108 78 chr3 46580530 46580734 -180943844 - MER63A DNA MER1_type 0 210 1 594 272 68 11 chr3 46580736 46580927 -180943651 + MIR SINE MIR 54 255 -7 1109 246 189 22 chr3 46580930 46581332 -180943246 - MLT1G1 LTR MaLR -1 594 126 2160 116 7 0 chr3 46581332 46581625 -180942953 - AluSx SINE Alu -13 299 5 1819 277 113 12 chr3 46581632 46582293 -180942285 + L2 LINE L2 1837 2564 -750 10384 24 19 133 chr3 46582433 46583943 -180940635 + SVA Other Other 48 1386 0 1436 146 31 100 chr3 46583949 46584534 -180940044 - L1MC/D LINE L1 -650 5986 5457 234 0 0 0 chr3 46584534 46584560 -180940018 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1436 146 31 100 chr3 46584560 46584654 -180939924 - L1MC/D LINE L1 -1179 5457 5358 3753 171 58 41 chr3 46584660 46585081 -180939497 - L1MC/D LINE L1 -3890 2650 2238 2607 74 0 0 chr3 46585081 46585391 -180939187 - AluY SINE Alu -1 310 1 3753 171 58 41 chr3 46585391 46585966 -180938612 - L1MC/D LINE L1 -4302 2238 1637 256 61 0 0 chr3 46586206 46586239 -180938339 + (TTC)n Simple_repeat Simple_repeat 1 180 0 2373 116 0 0 chr3 46586239 46586550 -180938028 - AluSq SINE Alu 0 344 1 1966 159 16 14 chr3 46586615 46586979 -180937599 + MER47A DNA MER2_type 1 365 -1 828 251 106 20 chr3 46587564 46587969 -180936609 - LTR16C LTR ERVL -14 477 1 208 151 38 19 chr3 46588190 46588243 -180936335 + (TTA)n Simple_repeat Simple_repeat 3 56 0 463 275 172 42 chr3 46588985 46589316 -180935262 + MLT1L LTR MaLR 40 413 -202 621 274 106 22 chr3 46589604 46589878 -180934700 + LTR33 LTR ERVL 112 408 -113 540 70 0 0 chr3 46589969 46590040 -180934538 - MER41B LTR ERV1 -86 549 479 21 0 0 0 chr3 46590105 46590126 -180934452 + AT_rich Low_complexity Low_complexity 1 21 0 908 270 55 37 chr3 46590558 46590700 -180933878 + L2 LINE L2 2483 2621 -693 568 234 18 0 chr3 46590700 46590811 -180933767 - MER81 DNA DNA -1 113 1 908 270 55 37 chr3 46590811 46590994 -180933584 + L2 LINE L2 2621 2814 -500 213 381 10 0 chr3 46590980 46591077 -180933501 - L2 LINE L2 -916 2398 2301 * 39 50 0 0 chr3 46591283 46591343 -180933235 + AT_rich Low_complexity Low_complexity 1 60 0 2795 224 37 134 chr3 46591346 46592596 -180931982 - L1MC4 LINE L1 -169 7873 6746 322 275 9 18 chr3 46593189 46593298 -180931280 - MIR3 SINE MIR -48 160 53 332 274 0 0 chr3 46593298 46593382 -180931196 + MER96 DNA MER1_type? 1 84 -91 243 22 22 43 chr3 46593951 46593997 -180930581 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 208 271 14 14 chr3 46594051 46594121 -180930457 + L2 LINE L2 2549 2618 -696 2134 182 39 63 chr3 46594178 46594767 -180929811 + L1M4 LINE L1 4144 4718 -1428 735 141 38 130 chr3 46594958 46595096 -180929482 + MLT2C2 LTR ERVL 297 415 -49 288 53 0 0 chr3 46595096 46595134 -180929444 + (CCA)n Simple_repeat Simple_repeat 1 38 0 735 141 38 130 chr3 46595134 46595180 -180929398 + MLT2C2 LTR ERVL 415 464 0 544 260 115 133 chr3 46595696 46596096 -180928482 - MLT1K LTR MaLR -16 572 180 3515 94 2 0 chr3 46596379 46596857 -180927721 + L1PA13 LINE L1 5684 6162 -1 1914 79 0 4 chr3 46597536 46597788 -180926790 - L1PA13 LINE L1 -4 6159 5909 250 291 51 51 chr3 46598192 46598309 -180926269 + L2 LINE L2 3197 3313 0 241 264 28 0 chr3 46598467 46598539 -180926039 - L3 LINE CR1 -196 1381 1308 225 279 0 38 chr3 46598911 46598990 -180925588 - MIR SINE MIR -34 228 153 1990 157 0 0 chr3 46598993 46599292 -180925286 - AluSx SINE Alu -11 301 3 273 263 84 0 chr3 46599536 46599631 -180924947 - MIR SINE MIR -108 154 52 1592 172 10 27 chr3 46599934 46600231 -180924347 + AluJo SINE Alu 11 302 -10 28 0 0 0 chr3 46600504 46600532 -180924046 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 46601338 46601359 -180923219 + GC_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3 46601692 46601724 -180922854 + AT_rich Low_complexity Low_complexity 1 32 0 334 299 48 61 chr3 46601860 46602214 -180922364 + L2 LINE L2 2709 3140 -173 447 252 59 37 chr3 46602495 46602630 -180921948 + L2 LINE L2 3168 3305 -8 897 279 60 11 chr3 46602838 46603107 -180921471 - MLT1K LTR MaLR 0 588 307 1964 271 71 23 chr3 46603294 46604113 -180920465 - L2 LINE L2 -740 2574 1717 25 0 0 0 chr3 46604160 46604185 -180920393 + AT_rich Low_complexity Low_complexity 1 25 0 3444 164 46 6 chr3 46604192 46604825 -180919753 - L1MD1 LINE L1 -2 6240 5583 585 284 138 17 chr3 46605603 46605835 -180918743 - MIR SINE MIR 0 262 3 1238 190 27 30 chr3 46606298 46606593 -180917985 + MER33 DNA MER1_type 1 294 -30 275 222 19 0 chr3 46606845 46606899 -180917679 + L2 LINE L2 3134 3188 -84 23 0 0 0 chr3 46607758 46607781 -180916797 + GC_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr3 46607787 46607816 -180916762 + GC_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr3 46607816 46607847 -180916731 + AT_rich Low_complexity Low_complexity 1 31 0 33 48 0 0 chr3 46607847 46607889 -180916689 + GC_rich Low_complexity Low_complexity 1 42 0 596 195 84 119 chr3 46609021 46609247 -180915331 + MLT1A1 LTR MaLR 1 218 -147 23 0 0 0 chr3 46610137 46610160 -180914418 + AT_rich Low_complexity Low_complexity 1 23 0 1708 144 61 11 chr3 46610233 46610510 -180914068 + AluJb SINE Alu 1 291 -21 1449 108 47 0 chr3 46610520 46610734 -180913844 + L1P5 LINE L1 5416 5639 -515 446 252 13 5 chr3 46611248 46611379 -180913199 + LTR43 LTR ERV1 189 472 -207 734 97 10 0 chr3 46613503 46613606 -180910972 + FLAM_C SINE Alu 2 105 -38 1730 165 46 0 chr3 46613805 46614090 -180910488 - AluJb SINE Alu -11 301 4 329 261 78 0 chr3 46614133 46614248 -180910330 - L1M4 LINE L1 -1922 4224 4101 751 258 64 30 chr3 46614282 46614580 -180909998 - MLT1C LTR MaLR -46 421 114 2650 145 37 0 chr3 46614922 46615356 -180909222 - L1PB3 LINE L1 -1 6153 5704 2798 179 66 28 chr3 46615501 46616111 -180908467 + L1MB7 LINE L1 5432 6064 -120 4941 72 12 6 chr3 46616120 46616789 -180907789 + L1PA8 LINE L1 5495 6167 -5 5877 207 118 29 chr3 46617041 46618650 -180905928 - L1MDa LINE L1 -4707 1833 81 430 219 130 18 chr3 46618671 46618840 -180905738 - L2 LINE L2 -1640 1674 1487 233 346 12 0 chr3 46618917 46618998 -180905580 - L2 LINE L2 -260 3053 2972 1275 184 125 61 chr3 46619503 46619629 -180904949 + Charlie2 DNA MER1_type 1958 2075 -787 1793 183 0 31 chr3 46619629 46619951 -180904627 + AluJb SINE Alu 1 312 0 1275 184 125 61 chr3 46619951 46620249 -180904329 + Charlie2 DNA MER1_type 2075 2409 -453 2121 175 37 30 chr3 46620791 46621255 -180903323 + MLT1C LTR MaLR 1 467 0 958 209 156 36 chr3 46621326 46621718 -180902860 + LTR16A1 LTR ERVL 19 457 0 621 231 14 0 chr3 46622115 46622258 -180902320 - L2 LINE L2 0 3313 3169 248 122 0 0 chr3 46622668 46622709 -180901869 + MIR SINE MIR 83 123 -85 970 93 0 0 chr3 46622721 46622850 -180901728 - L1PA12 LINE L1 -67 6101 5973 6277 88 20 22 chr3 46623396 46624214 -180900364 - L1PA13 LINE L1 -2 6161 5344 2494 69 0 3 chr3 46624214 46624519 -180900059 + AluY SINE Alu 1 304 -7 6277 88 20 22 chr3 46624519 46624610 -180899968 - L1PA13 LINE L1 -819 5344 5254 228 219 62 16 chr3 46624612 46624676 -180899902 + MER102a DNA MER1_type 47 113 -217 1793 175 0 14 chr3 46625028 46625314 -180899264 - AluJb SINE Alu -27 285 4 1320 255 13 10 chr3 46625324 46625634 -180898944 + MER93a LTR ERV1 92 402 0 390 291 27 0 chr3 46625730 46625840 -180898738 - MER81 DNA DNA 0 114 2 236 246 115 0 chr3 46626010 46626071 -180898507 + MER3 DNA MER1_type 1 68 -141 1993 129 17 14 chr3 46626076 46626370 -180898208 + AluSq SINE Alu 1 295 -18 6233 88 10 9 chr3 46626903 46628327 -180896251 + L1PA8A LINE L1 4440 5861 -270 475 250 60 30 chr3 46628466 46628634 -180895944 + MER102a DNA MER1_type 152 324 -6 399 275 28 51 chr3 46628932 46628987 -180895591 + MER5B DNA MER1_type 5 60 -118 2238 113 3 3 chr3 46628987 46629289 -180895289 + AluSq SINE Alu 1 302 -11 399 275 28 51 chr3 46629289 46629411 -180895167 + MER5B DNA MER1_type 60 178 0 253 219 178 18 chr3 46629662 46629831 -180894747 - MER67C LTR ERV1 -413 297 102 970 265 3 3 chr3 46629836 46630127 -180894451 + AluSq SINE Alu 6 296 -17 306 243 0 58 chr3 46630127 46630230 -180894348 - MER67C LTR ERV1 -604 106 10 189 0 0 0 chr3 46630489 46630510 -180894068 + (T)n Simple_repeat Simple_repeat 1 21 0 237 191 44 15 chr3 46681063 46681131 -180843447 + HAL1 LINE L1 1214 1283 -1224 2356 103 0 3 chr3 46681136 46681447 -180843131 + AluSq SINE Alu 4 313 0 269 243 0 14 chr3 46681471 46681545 -180843033 - MER116 DNA Mariner -6 74 2 1047 228 71 102 chr3 46681546 46681744 -180842834 + HAL1 LINE L1 1293 1496 -1011 2348 84 0 31 chr3 46681744 46682064 -180842514 - AluY SINE Alu -1 310 1 1047 228 71 102 chr3 46682064 46682386 -180842192 + HAL1 LINE L1 1496 1797 -710 398 285 78 41 chr3 46682684 46682954 -180841624 + HAL1 LINE L1 2228 2507 0 3016 148 85 66 chr3 46683387 46683474 -180841104 - LTR8A LTR ERV1 0 727 643 1969 108 61 17 chr3 46683474 46683771 -180840807 + AluSx SINE Alu 1 310 -2 3016 148 85 66 chr3 46683771 46683884 -180840694 - LTR8A LTR ERV1 -84 643 534 4196 148 50 43 chr3 46683884 46684095 -180840483 + MER4D LTR ERV1 1 209 -694 1730 156 10 16 chr3 46684095 46684403 -180840175 + AluJb SINE Alu 3 308 -4 4196 148 50 43 chr3 46684403 46685088 -180839490 + MER4D LTR ERV1 209 903 0 3016 148 85 66 chr3 46685088 46685566 -180839012 - LTR8A LTR ERV1 -193 534 35 287 313 150 25 chr3 46685597 46685757 -180838821 + MIR SINE MIR 26 205 -57 249 248 79 0 chr3 46686142 46686243 -180838335 + L1M4 LINE L1 5229 5337 -809 3591 209 31 49 chr3 46686388 46688004 -180836574 - L1MD1 LINE L1 -15 6227 4639 1761 269 69 5 chr3 46688003 46688627 -180835951 - L1MD1 LINE L1 -2486 3660 2997 * 794 159 7 51 chr3 46688628 46688712 -180835866 + AluJ SINE Alu 2 88 -224 4554 116 25 51 chr3 46688712 46688879 -180835699 - LTR8 LTR ERV1 0 691 521 1915 93 11 15 chr3 46688879 46689148 -180835430 - AluSq SINE Alu -9 304 37 4554 116 25 51 chr3 46689148 46689624 -180834954 - LTR8 LTR ERV1 -170 521 65 2314 112 3 0 chr3 46689624 46689929 -180834649 + AluSx SINE Alu 1 306 -6 4554 116 25 51 chr3 46689929 46689993 -180834585 - LTR8 LTR ERV1 -626 65 1 794 159 7 51 chr3 46689993 46690046 -180834532 + AluJ SINE Alu 88 133 -179 940 183 0 51 chr3 46690050 46690225 -180834353 + AluJ SINE Alu 137 302 0 328 197 13 13 chr3 46690226 46690302 -180834276 - L1MD1 LINE L1 -3141 3005 2930 342 61 0 0 chr3 46690305 46690354 -180834224 + (TG)n Simple_repeat Simple_repeat 2 50 0 921 210 150 99 chr3 46690365 46690899 -180833679 - MER34B LTR ERV1 0 565 5 271 132 0 0 chr3 46690901 46690939 -180833639 - MER34C LTR ERV1 -547 38 1 375 206 0 0 chr3 46690959 46691022 -180833556 + AluS SINE Alu 225 287 -14 193 237 26 105 chr3 46691431 46691499 -180833079 - MIR SINE MIR -41 221 164 2164 138 0 6 chr3 46691499 46691811 -180832767 - AluJb SINE Alu -2 310 1 193 237 26 105 chr3 46691811 46691856 -180832722 - MIR SINE MIR -98 164 117 390 246 269 0 chr3 46691857 46691991 -180832587 + MER5A DNA MER1_type 7 176 -13 228 329 0 0 chr3 46691999 46692069 -180832509 - MIR SINE MIR -83 125 56 1430 40 11 0 chr3 46692415 46692592 -180831986 - L1P LINE L1 -1471 4675 4497 10767 42 0 0 chr3 46692593 46693882 -180830696 + L1P LINE L1 3193 4481 -1665 1054 90 8 0 chr3 46693882 46694016 -180830562 - AluSq/x SINE Alu -177 135 1 516 296 50 45 chr3 46694019 46694397 -180830181 + L1ME4a LINE L1 5568 5947 -174 * 31672 117 11 69 chr3 46694393 46700001 -180824577 - L1P LINE L1 -856 5290 12 3819 201 16 29 chr3 46700012 46700305 -180824273 - L1 LINE L1 -3105 3041 2746 297 0 0 0 chr3 46700305 46700338 -180824240 + (TG)n Simple_repeat Simple_repeat 2 34 0 3819 201 16 29 chr3 46700338 46700730 -180823848 - L1 LINE L1 -3400 2746 2367 2456 90 0 0 chr3 46700730 46701041 -180823537 - AluY SINE Alu 0 311 1 3819 201 16 29 chr3 46701041 46701231 -180823347 - L1 LINE L1 -3779 2367 2176 662 226 15 8 chr3 46701236 46701369 -180823209 - AluJo SINE Alu -177 135 2 281 69 35 69 chr3 46701371 46701429 -180823149 - L1M2 LINE L1 -3958 2891 2836 1866 168 0 3 chr3 46701769 46702061 -180822517 - AluJb SINE Alu -21 291 1 1727 157 3 31 chr3 46702082 46702376 -180822202 + AluJo SINE Alu 2 287 -25 521 232 83 43 chr3 46702388 46702642 -180821936 + L1MC5 LINE L1 7531 7794 -167 2516 74 0 3 chr3 46702644 46702956 -180821622 + AluY SINE Alu 1 311 0 2338 98 0 0 chr3 46703292 46703588 -180820990 + AluSg SINE Alu 9 304 -6 23 33 0 0 chr3 46703602 46703632 -180820946 + AT_rich Low_complexity Low_complexity 1 30 0 1019 260 115 15 chr3 46703955 46704224 -180820354 + LTR16A LTR ERVL 155 450 0 312 48 0 0 chr3 46704262 46704304 -180820274 + (TG)n Simple_repeat Simple_repeat 2 43 0 1049 282 80 3 chr3 46704996 46705322 -180819256 - LTR40a LTR ERVL -165 354 4 1509 265 28 22 chr3 46705333 46705784 -180818794 + L1ME1 LINE L1 5258 5714 -456 2246 175 25 60 chr3 46705784 46706263 -180818315 + MLT1C LTR MaLR 3 464 -3 1509 265 28 22 chr3 46706263 46706321 -180818257 + L1ME1 LINE L1 5714 5770 -400 830 183 0 8 chr3 46706389 46706520 -180818058 + AluJo/FLAM SINE Alu 1 130 -172 1687 128 0 8 chr3 46706522 46706757 -180817821 + AluSx SINE Alu 1 233 -79 520 245 13 7 chr3 46706776 46706927 -180817651 + L1ME1 LINE L1 5811 5962 -208 882 284 97 10 chr3 46707578 46707867 -180816711 + L1M4b LINE L1 1 314 -6545 2237 86 0 10 chr3 46707867 46708158 -180816420 + LTR8 LTR ERV1 1 288 -403 * 2710 189 46 52 chr3 46708146 46708774 -180815804 + LTR19C LTR ERV1 156 779 0 1722 253 80 39 chr3 46708774 46709311 -180815267 + L1M4b LINE L1 890 1448 -5411 2569 68 3 0 chr3 46709319 46709627 -180814951 + AluY SINE Alu 1 309 -2 25222 153 8 7 chr3 46709634 46713611 -180810967 + HERV15 LTR ERV1 4753 8734 -1 3237 90 29 27 chr3 46713611 46713710 -180810868 + LTR15 LTR ERV1 1 98 -395 7465 37 16 0 chr3 46713710 46714574 -180810004 + L1PA4 LINE L1 5278 6155 0 3237 90 29 27 chr3 46714574 46714915 -180809663 + LTR15 LTR ERV1 98 446 -47 2010 93 41 0 chr3 46714915 46715218 -180809360 + AluY SINE Alu 1 314 0 3237 90 29 27 chr3 46715218 46715251 -180809327 + LTR15 LTR ERV1 446 477 -16 247 132 0 0 chr3 46715656 46715694 -180808884 + L1ME1 LINE L1 6121 6158 -8 * 254 100 0 0 chr3 46715661 46715701 -180808877 + L1ME2 LINE L1 6123 6162 -2 1778 126 0 4 chr3 46715715 46715970 -180808608 + AluSx SINE Alu 57 310 -2 228 35 0 0 chr3 46716194 46716223 -180808355 + (TC)n Simple_repeat Simple_repeat 2 30 0 3050 109 9 39 chr3 46716266 46716723 -180807855 - MER65A LTR ERV1 -2 443 1 672 205 0 0 chr3 46716723 46716840 -180807738 - MER65A-int LTR ERV1 0 4871 4755 550 140 0 32 chr3 46716840 46716933 -180807645 + AluSg/x SINE Alu 219 308 -2 817 148 0 59 chr3 46717071 46717240 -180807338 + AluSg/x SINE Alu 154 312 0 292 96 5 106 chr3 46717240 46717318 -180807260 + L1MA4 LINE L1 5413 5482 -818 3694 152 58 30 chr3 46719062 46719195 -180805383 + L1MA4 LINE L1 5476 5604 -696 2322 103 0 6 chr3 46719195 46719506 -180805072 + AluSx SINE Alu 1 309 -3 3694 152 58 30 chr3 46719506 46719694 -180804884 + L1MA4 LINE L1 5604 5785 -515 216 0 0 0 chr3 46719694 46719718 -180804860 + (TG)n Simple_repeat Simple_repeat 2 25 0 * 324 67 50 0 chr3 46719717 46719777 -180804801 + (TA)n Simple_repeat Simple_repeat 1 63 0 3694 152 58 30 chr3 46719718 46720158 -180804420 + L1MA4 LINE L1 5785 6199 -101 14406 206 26 37 chr3 46720338 46724436 -180800142 + L1P3 LINE L1 12 4080 -2381 5826 112 15 10 chr3 46724434 46725353 -180799225 + L1PA11 LINE L1 5358 6174 0 * 1615 116 4 13 chr3 46725592 46725825 -180798753 - AluSx SINE Alu -81 231 1 218 164 16 98 chr3 46726535 46726596 -180797982 + MIR3 SINE MIR 115 170 -38 1971 143 10 0 chr3 46727429 46727729 -180796849 + AluSx SINE Alu 1 303 -9 253 336 113 57 chr3 46728311 46728540 -180796038 + L2 LINE L2 2996 3237 -35 758 286 39 10 chr3 46728710 46728963 -180795615 + MIR SINE MIR 8 259 -3 2252 100 7 0 chr3 46728992 46729282 -180795296 - AluSg SINE Alu -17 293 2 703 284 58 48 chr3 46729286 46729905 -180794673 - L1MEc LINE L1 -4759 1637 1013 1957 155 3 16 chr3 46729968 46730284 -180794294 - AluSx SINE Alu 0 312 1 1964 91 0 25 chr3 46730335 46730609 -180793969 - AluSc SINE Alu -7 302 36 658 197 40 46 chr3 46730609 46730750 -180793828 - 7SLRNA srpRNA srpRNA -9 311 170 253 313 12 24 chr3 46730961 46731044 -180793534 - L1MEc LINE L1 -5488 717 636 1657 172 27 10 chr3 46731497 46731793 -180792785 + L1MB5 LINE L1 5872 6172 -2 367 275 70 46 chr3 46731869 46731941 -180792637 - L1MEc LINE L1 -4147 2249 2180 311 0 0 25 chr3 46731941 46731981 -180792597 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 367 275 70 46 chr3 46731981 46732235 -180792343 - L1M4 LINE L1 -4216 2180 1915 286 213 0 38 chr3 46732224 46732304 -180792274 + L1M4 LINE L1 2206 2282 -3933 * 1801 171 3 0 chr3 46732310 46732609 -180791969 + AluJb SINE Alu 6 305 -7 25 0 0 0 chr3 46732610 46732635 -180791943 + AT_rich Low_complexity Low_complexity 1 25 0 813 198 118 0 chr3 46733046 46733233 -180791345 + MER2 DNA MER2_type 1 209 -136 25 0 0 0 chr3 46733241 46733266 -180791312 + AT_rich Low_complexity Low_complexity 1 25 0 237 196 98 0 chr3 46733271 46733322 -180791256 + MER2 DNA MER2_type 280 335 -10 208 78 118 0 chr3 46733915 46733966 -180790612 + (TATAA)n Simple_repeat Simple_repeat 2 58 0 555 105 0 35 chr3 46734148 46734234 -180790344 - Tigger4(Zombi) DNA MER2_type -96 2635 2553 3617 47 50 0 chr3 46734234 46734274 -180790304 - MLT2A1 LTR ERVL 0 444 407 216 0 0 0 chr3 46734274 46734298 -180790280 + (TA)n Simple_repeat Simple_repeat 2 25 0 3617 47 50 0 chr3 46734298 46734680 -180789898 - MLT2A1 LTR ERVL -37 407 1 1115 160 0 0 chr3 46734707 46734876 -180789702 - AluSx SINE Alu -24 288 120 394 345 0 0 chr3 46735782 46735950 -180788628 + (CCA)n Simple_repeat Simple_repeat 1 168 0 1122 101 0 0 chr3 46736615 46736754 -180787824 - AluSx SINE Alu -173 139 1 310 109 0 0 chr3 46736754 46736800 -180787778 - Tigger4(Zombi) DNA MER2_type -283 2448 2403 * 1997 119 58 0 chr3 46736798 46737110 -180787468 + Tigger4(Zombi) DNA MER2_type 1535 1864 -867 6220 107 21 58 chr3 46737125 46738132 -180786446 - Tigger4(Zombi) DNA MER2_type -326 2405 1436 22 35 0 0 chr3 46739249 46739278 -180785300 + AT_rich Low_complexity Low_complexity 1 29 0 1255 166 26 156 chr3 46739284 46739412 -180785166 + MLT1B LTR MaLR 1 144 -246 2328 100 0 28 chr3 46739412 46739733 -180784845 + AluSx SINE Alu 1 312 0 1255 166 26 156 chr3 46739733 46739772 -180784806 + MLT1B LTR MaLR 144 186 -204 1977 146 0 10 chr3 46739772 46740080 -180784498 + AluSx SINE Alu 8 312 0 1255 166 26 156 chr3 46740080 46740334 -180784244 + MLT1B LTR MaLR 186 368 -22 251 234 13 0 chr3 46740462 46740539 -180784039 + CT-rich Low_complexity Low_complexity 3 80 0 232 191 0 0 chr3 46740976 46741023 -180783555 + L1MB8 LINE L1 4553 4599 -1547 804 198 32 0 chr3 46741125 46741282 -180783296 - FAM SINE Alu -12 173 12 1266 169 32 75 chr3 46741882 46742190 -180782388 + MLT1B LTR MaLR 95 389 -1 376 151 58 12 chr3 46742190 46742276 -180782302 + L1MC2 LINE L1 6252 6341 -3 4631 134 34 40 chr3 46742563 46743448 -180781130 - L1M2 LINE L1 -3974 2875 1996 1852 151 10 16 chr3 46743448 46743752 -180780826 - AluJb SINE Alu -10 302 1 7061 138 17 5 chr3 46743764 46745916 -180778662 - L1MA2 LINE L1 0 6304 4131 516 57 0 0 chr3 46745916 46745986 -180778592 - L1M2 LINE L1 -4846 2003 1934 644 200 0 0 chr3 46746089 46746199 -180778379 - AluSq/x SINE Alu -202 111 2 529 179 73 0 chr3 46746223 46746340 -180778238 + L1MB8 LINE L1 5440 5566 -608 2297 107 0 0 chr3 46746340 46746640 -180777938 - AluSx SINE Alu -12 300 1 631 221 76 17 chr3 46746644 46746816 -180777762 + L1MB8 LINE L1 5913 6094 -84 2312 88 0 3 chr3 46747964 46748259 -180776319 - AluSg SINE Alu -16 294 1 388 319 125 0 chr3 46748346 46748490 -180776088 + MER91A DNA MER1_type 1 162 -34 742 187 0 22 chr3 46748763 46748897 -180775681 - FLAM_C SINE Alu -2 131 1 1668 77 32 5 chr3 46748948 46749168 -180775410 - MER30 DNA MER1_type 0 230 5 345 205 24 24 chr3 46749277 46749360 -180775218 - MER5A DNA MER1_type -71 118 36 310 259 99 43 chr3 46749394 46749556 -180775022 - MER5B DNA MER1_type -2 176 6 1785 208 252 17 chr3 46750019 46750507 -180774071 + L1MC4 LINE L1 7127 7499 -543 1931 140 4 0 chr3 46750507 46750786 -180773792 + AluSx SINE Alu 18 297 -15 1785 208 252 17 chr3 46750786 46750933 -180773645 + L1MC4 LINE L1 7499 7911 -131 2081 116 3 30 chr3 46750984 46751285 -180773293 - AluSx SINE Alu -19 293 1 298 57 0 0 chr3 46751296 46751331 -180773247 - U2 snRNA snRNA -153 35 1 288 301 62 18 chr3 46751837 46751950 -180772628 - MER5A DNA MER1_type -3 186 69 285 323 94 8 chr3 46752013 46752140 -180772438 + L2 LINE L2 3087 3224 -48 1207 199 85 14 chr3 46752896 46753177 -180771401 - LTR16C LTR ERVL 0 491 191 496 179 94 8 chr3 46753210 46753327 -180771251 + L1MC4 LINE L1 7437 7563 -479 2170 139 0 0 chr3 46754043 46754352 -180770226 + AluSx SINE Alu 1 309 -3 1132 153 0 0 chr3 46755276 46755446 -180769132 + AluSg/x SINE Alu 134 303 -9 2365 96 0 3 chr3 46755446 46755747 -180768831 + AluSq SINE Alu 1 300 -13 444 310 10 65 chr3 46756202 46756402 -180768176 + MIR3 SINE MIR 9 197 -11 1382 214 140 37 chr3 46756812 46757270 -180767308 + MLT1D LTR MaLR 1 505 0 188 324 59 15 chr3 46757433 46757501 -180767077 - L2 LINE L2 -9 3263 3193 1206 164 16 0 chr3 46757668 46757857 -180766721 + AluSg/x SINE Alu 98 289 -23 286 221 0 0 chr3 46757857 46757934 -180766644 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 650 284 171 18 chr3 46757934 46758343 -180766235 - L1ME3A LINE L1 -214 5956 5472 1493 127 0 9 chr3 46758343 46758564 -180766014 - AluSg/x SINE Alu -9 303 85 650 284 171 18 chr3 46758564 46758598 -180765980 - L1ME3A LINE L1 -698 5472 5445 412 297 73 23 chr3 46759440 46759740 -180764838 - L1MEd LINE L1 -4891 1228 914 465 286 45 0 chr3 46760616 46760749 -180763829 + L2 LINE L2 3168 3306 -7 706 288 88 39 chr3 46761102 46761525 -180763053 + L1M4 LINE L1 4408 4860 -1286 7507 84 4 9 chr3 46761525 46762499 -180762079 + LTR5 LTR ERVK 1 969 0 706 288 88 39 chr3 46762499 46762562 -180762016 + L1M4 LINE L1 4860 4918 -1228 8275 43 22 8 chr3 46762571 46763564 -180761014 - LTR13 LTR ERVK 0 1007 1 1584 166 63 25 chr3 46763696 46763980 -180760598 + AluJb SINE Alu 5 299 -13 291 172 81 11 chr3 46763981 46764068 -180760510 + L1ME3 LINE L1 5859 5951 -211 329 264 37 31 chr3 46764969 46765132 -180759446 - AluJb SINE Alu 0 302 164 864 79 18 0 chr3 46765274 46765388 -180759190 + AluSg/x SINE Alu 181 296 -16 664 216 164 21 chr3 46766059 46766397 -180758181 + MLT1C LTR MaLR 1 389 -1 180 229 82 0 chr3 46766409 46766470 -180758108 - MIR SINE MIR -59 203 138 1709 140 57 4 chr3 46766472 46766737 -180757841 + AluSx SINE Alu 1 279 -33 205 257 27 27 chr3 46766805 46766879 -180757699 - MIR SINE MIR -182 80 7 1930 138 32 0 chr3 46766929 46767212 -180757366 - AluSx SINE Alu -17 295 4 731 157 85 0 chr3 46767379 46767532 -180757046 - L1MA7 LINE L1 -2 6289 6124 727 170 0 15 chr3 46767532 46767667 -180756911 + LTR5 LTR ERVK 745 877 -92 1861 147 0 0 chr3 46767867 46768126 -180756452 - AluSx SINE Alu -53 259 1 781 203 0 26 chr3 46768260 46768413 -180756165 + AluJo SINE Alu 2 150 -162 1972 263 66 13 chr3 46768483 46769015 -180755563 + MLT1G1 LTR MaLR 36 595 0 21 0 0 0 chr3 46769305 46769326 -180755252 + AT_rich Low_complexity Low_complexity 1 21 0 207 261 113 49 chr3 46769783 46769925 -180754653 - L2 LINE L2 -1 3312 3162 432 279 23 16 chr3 46770012 46770141 -180754437 + MARNA DNA Mariner 377 506 -80 2480 92 0 0 chr3 46770158 46770463 -180754115 - AluSx SINE Alu -7 305 1 459 337 49 18 chr3 46770547 46770832 -180753746 + L1ME LINE L1 17 310 -5760 1584 201 7 10 chr3 46771450 46771753 -180752825 + AluJo SINE Alu 1 302 -10 198 236 0 18 chr3 46772816 46772871 -180751707 - MER5A DNA MER1_type -110 79 26 887 141 0 0 chr3 46772972 46773093 -180751485 + FLAM_C SINE Alu 1 121 -22 1900 135 107 57 chr3 46774470 46774856 -180749722 + LTR46 LTR ERV1 1 366 -94 342 0 0 0 chr3 46774856 46774894 -180749684 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 486 49 0 0 chr3 46774897 46774958 -180749620 - L1PA5 LINE L1 -16 6138 6078 1900 135 107 57 chr3 46774958 46775005 -180749573 + LTR46 LTR ERV1 367 460 0 1643 170 55 10 chr3 46776062 46776351 -180748227 - AluSx SINE Alu -10 302 1 2218 108 3 0 chr3 46776355 46776650 -180747928 - AluSp SINE Alu -17 296 1 385 212 50 0 chr3 46776656 46776755 -180747823 + MER97c DNA MER1_type? 76 179 -911 271 205 24 0 chr3 46776947 46777030 -180747548 + L1MA8 LINE L1 6205 6289 -2 1890 121 64 7 chr3 46777433 46777714 -180746864 + AluSx SINE Alu 1 297 -15 2306 108 0 3 chr3 46777995 46778300 -180746278 - AluSg SINE Alu -6 304 1 2018 125 4 0 chr3 46780809 46781088 -180743490 + AluSx SINE Alu 1 280 -32 3064 171 178 41 chr3 46781433 46781739 -180742839 - L1MB7 LINE L1 0 6184 5921 923 182 6 6 chr3 46781739 46781898 -180742680 - FRAM SINE Alu -7 159 1 3064 171 178 41 chr3 46781898 46781931 -180742647 - L1MB7 LINE L1 -263 5921 5894 2203 134 0 0 chr3 46781931 46782230 -180742348 + AluSx SINE Alu 1 299 -13 3064 171 178 41 chr3 46782230 46782672 -180741906 - L1MB7 LINE L1 -290 5894 5295 255 226 16 0 chr3 46782800 46782862 -180741716 - L1ME LINE L1 -410 5752 5690 445 213 213 0 chr3 46782967 46783089 -180741489 - MLT2D LTR ERVL -57 357 210 258 32 0 0 chr3 46783343 46783374 -180741204 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 476 103 0 0 chr3 46783413 46783481 -180741097 + (GGAA)n Simple_repeat Simple_repeat 3 70 0 22 70 0 0 chr3 46783643 46783686 -180740892 + AT_rich Low_complexity Low_complexity 1 43 0 331 316 23 17 chr3 46783797 46783971 -180740607 + L1M4 LINE L1 3025 3199 -2947 287 197 14 0 chr3 46784087 46784126 -180740452 + GA-rich Low_complexity Low_complexity 4 46 -29 1618 152 115 0 chr3 46784126 46784395 -180740183 + AluSx SINE Alu 1 300 -12 287 197 14 0 chr3 46784395 46784426 -180740152 + GA-rich Low_complexity Low_complexity 46 75 0 2123 104 11 0 chr3 46785568 46785869 -180738709 + AluSx SINE Alu 1 304 0 1688 176 7 0 chr3 46785876 46786149 -180738429 + AluJo SINE Alu 7 281 -31 2309 85 3 3 chr3 46786149 46786441 -180738137 - AluSg SINE Alu -16 294 2 599 228 9 36 chr3 46786557 46786776 -180737802 - AluSg/x SINE Alu 0 310 98 1207 240 3 6 chr3 46786891 46787204 -180737374 - AluSx SINE Alu 0 312 1 199 164 16 98 chr3 46787914 46787975 -180736603 + MIR3 SINE MIR 115 170 -38 1983 143 10 0 chr3 46788808 46789108 -180735470 + AluSx SINE Alu 1 303 -9 183 336 113 57 chr3 46789690 46789919 -180734659 + L2 LINE L2 2996 3237 -35 692 284 39 4 chr3 46790113 46790342 -180734236 + MIR SINE MIR 23 259 -3 2301 109 0 0 chr3 46790371 46790664 -180733914 - AluSg SINE Alu -17 293 1 1057 101 0 0 chr3 46791322 46791460 -180733118 - AluSq/x SINE Alu -175 138 1 1082 156 85 0 chr3 46791623 46791847 -180732731 - L1MA7 LINE L1 -2 6289 6047 341 270 35 0 chr3 46791858 46791973 -180732605 - LTR16C LTR ERVL -97 394 276 234 222 16 32 chr3 46792052 46792115 -180732463 + MER114 LTR ERV 585 646 -2 29 0 0 0 chr3 46792140 46792169 -180732409 + AT_rich Low_complexity Low_complexity 1 29 0 2244 118 0 13 chr3 46793216 46793530 -180731048 + AluSx SINE Alu 1 310 -2 513 263 78 19 chr3 46793858 46794063 -180730515 + MIR SINE MIR 2 218 -44 2505 148 41 18 chr3 46794064 46794223 -180730355 - Tigger3(Golem) DNA MER2_type -1 3027 2873 2423 138 30 19 chr3 46794223 46794649 -180729929 - MSTB1 LTR MaLR 0 432 2 2505 148 41 18 chr3 46794649 46794928 -180729650 - Tigger3(Golem) DNA MER2_type -155 2873 2579 2252 108 3 0 chr3 46794930 46795225 -180729353 - AluSx SINE Alu -16 296 1 982 125 0 0 chr3 46795225 46795361 -180729217 - AluJb SINE Alu -176 136 1 1585 210 11 35 chr3 46795536 46795902 -180728676 + MLT1A1 LTR MaLR 1 357 -8 23 33 0 0 chr3 46795975 46796005 -180728573 + AT_rich Low_complexity Low_complexity 1 30 0 31 0 0 0 chr3 46796059 46796090 -180728488 + AT_rich Low_complexity Low_complexity 1 31 0 1680 142 75 4 chr3 46796091 46796345 -180728233 - AluJb SINE Alu -25 287 16 1575 187 3 31 chr3 46796347 46796641 -180727937 - AluJo SINE Alu -26 286 1 2841 216 54 33 chr3 46796642 46797227 -180727351 - L1ME1 LINE L1 -56 6110 5504 1985 128 0 0 chr3 46797227 46797493 -180727085 + AluSx SINE Alu 1 266 -46 2841 216 54 33 chr3 46797493 46797685 -180726893 - L1ME1 LINE L1 -662 5504 5317 299 120 0 52 chr3 46797749 46797820 -180726758 - AluSp SINE Alu -170 133 76 818 143 16 0 chr3 46799349 46799475 -180725103 - FLAM_C SINE Alu -4 129 2 690 181 16 80 chr3 46799864 46799886 -180724692 + L1MB7 LINE L1 6009 6031 -153 2239 126 0 0 chr3 46799886 46800188 -180724390 - AluSx SINE Alu -10 302 1 690 181 16 80 chr3 46800188 46800353 -180724225 + L1MB7 LINE L1 6031 6184 0 302 374 35 10 chr3 46800910 46801199 -180723379 + HAL1 LINE L1 637 932 -1575 1871 256 88 65 chr3 46801328 46802435 -180722143 + HAL1 LINE L1 1026 2157 -350 385 267 62 40 chr3 46802550 46802726 -180721852 + HAL1 LINE L1 2328 2507 0 1714 164 7 121 chr3 46802759 46803110 -180721468 - MLT1B LTR MaLR -1 389 96 1647 119 88 64 chr3 46803110 46803405 -180721173 - AluSg SINE Alu -8 302 1 1714 164 7 121 chr3 46803405 46803492 -180721086 - MLT1B LTR MaLR -294 96 1 291 270 11 0 chr3 46804047 46804136 -180720442 - MIR SINE MIR -29 233 144 2103 119 7 3 chr3 46804317 46804620 -180719958 + AluSx SINE Alu 1 304 -8 284 278 30 18 chr3 46805612 46805781 -180718797 + T-rich Low_complexity Low_complexity 2 172 0 22 56 0 0 chr3 46806283 46806319 -180718259 + AT_rich Low_complexity Low_complexity 1 36 0 418 235 70 0 chr3 46806729 46806844 -180717734 - L1MC4 LINE L1 -6 8036 7914 740 221 6 0 chr3 46806871 46807216 -180717362 + (TA)n Simple_repeat Simple_repeat 1 347 0 259 241 72 0 chr3 46807216 46807299 -180717279 - L1MC4 LINE L1 -1339 6703 6615 507 244 0 0 chr3 46807300 46807431 -180717147 + (TA)n Simple_repeat Simple_repeat 1 131 0 302 326 0 0 chr3 46807432 46807524 -180717054 + L1MC4 LINE L1 6614 6705 -1337 332 185 0 37 chr3 46807524 46807632 -180716946 + (TTTAA)n Simple_repeat Simple_repeat 4 107 0 802 229 221 7 chr3 46807634 46807905 -180716673 - L1MC4 LINE L1 -254 7788 7460 234 143 16 32 chr3 46808454 46808517 -180716061 + L1MC4 LINE L1 7507 7568 -474 350 213 120 28 chr3 46808580 46808688 -180715890 - MIR SINE MIR -77 185 68 410 230 81 54 chr3 46808688 46808910 -180715668 - Charlie7 DNA MER1_type -51 2561 2334 555 243 179 82 chr3 46808960 46809333 -180715245 - Charlie7 DNA MER1_type -2102 510 82 2176 108 0 10 chr3 46809333 46809629 -180714949 - AluSc SINE Alu -15 294 2 555 243 179 82 chr3 46809629 46809720 -180714858 - Charlie7 DNA MER1_type -2530 82 1 1759 170 0 45 chr3 46810845 46811157 -180713421 + AluJb SINE Alu 1 298 -14 2466 168 36 66 chr3 46811409 46811968 -180712610 - MER74A LTR ERVL -1 557 16 753 162 0 0 chr3 46812545 46812662 -180711916 - MER7A DNA MER2_type 0 336 220 644 223 93 0 chr3 46812654 46812793 -180711785 - MER7A DNA MER2_type -195 151 2 * 526 203 98 8 chr3 46812819 46812942 -180711636 - MER106B DNA MER1_type -25 1034 901 4349 230 64 41 chr3 46813056 46813786 -180710792 - L1MD1 LINE L1 -62 7746 7035 216 67 0 0 chr3 46813786 46813816 -180710762 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 4349 230 64 41 chr3 46813816 46814128 -180710450 - L1MD1 LINE L1 -773 7035 6732 2403 144 65 5 chr3 46814128 46814531 -180710047 - MSTA LTR MaLR 0 428 2 4349 230 64 41 chr3 46814531 46814777 -180709801 - L1MD1 LINE L1 -1076 6732 6081 319 179 0 51 chr3 46814794 46814872 -180709706 - L1MC4a LINE L1 -1494 6314 6241 308 229 131 16 chr3 46816530 46816652 -180707926 + MER69 DNA AcHobo 1 136 -2390 1459 182 7 25 chr3 46816732 46817012 -180707566 - AluJo SINE Alu -25 287 13 1440 139 102 0 chr3 46817112 46817356 -180707222 + AluSx SINE Alu 14 282 -30 257 136 119 0 chr3 46818790 46818849 -180705729 - MER5B DNA MER1_type -1 177 112 205 270 27 14 chr3 46819724 46819798 -180704780 + L2 LINE L2 3183 3257 -15 1232 205 25 18 chr3 46820325 46820603 -180703975 - AluJb SINE Alu -22 290 11 739 217 6 19 chr3 46820613 46820770 -180703808 - FRAM SINE Alu -24 152 1 1940 146 6 22 chr3 46820955 46821270 -180703308 + AluSx SINE Alu 1 310 -2 2030 95 51 3 chr3 46821343 46821637 -180702941 - AluY SINE Alu -3 308 1 258 33 0 0 chr3 46822765 46822795 -180701783 + LTR6A LTR ERV1 73 102 -462 180 0 0 0 chr3 46824369 46824389 -180700189 + (T)n Simple_repeat Simple_repeat 1 20 0 1936 151 7 3 chr3 46824434 46824733 -180699845 + AluJo SINE Alu 2 301 -11 1902 84 69 11 chr3 46824749 46825024 -180699554 + AluSx SINE Alu 5 295 -17 444 176 194 0 chr3 46825520 46825628 -180698950 + MER5B DNA MER1_type 9 137 -41 3358 179 67 35 chr3 46825636 46825714 -180698864 - LTR48 LTR ERV1 -18 769 695 2341 89 3 0 chr3 46825714 46826007 -180698571 - AluSp SINE Alu -19 294 1 3358 179 67 35 chr3 46826007 46826673 -180697905 - LTR48 LTR ERV1 -92 695 1 216 130 0 109 chr3 46826674 46826720 -180697858 + MER5B DNA MER1_type 136 176 -2 2083 127 10 0 chr3 46826760 46827052 -180697526 - AluSx SINE Alu -17 295 1 1836 164 13 10 chr3 46827213 46827523 -180697055 - AluSx SINE Alu -1 311 1 1955 124 50 0 chr3 46827537 46827819 -180696759 - AluSx SINE Alu -16 296 1 982 125 0 0 chr3 46827819 46827955 -180696623 - AluJb SINE Alu -176 136 1 1585 210 11 35 chr3 46828130 46828496 -180696082 + MLT1A1 LTR MaLR 1 357 -8 23 33 0 0 chr3 46828569 46828599 -180695979 + AT_rich Low_complexity Low_complexity 1 30 0 31 0 0 0 chr3 46828653 46828684 -180695894 + AT_rich Low_complexity Low_complexity 1 31 0 1680 142 75 4 chr3 46828685 46828939 -180695639 - AluJb SINE Alu -25 287 16 1575 187 3 31 chr3 46828941 46829235 -180695343 - AluJo SINE Alu -26 286 1 2841 216 54 33 chr3 46829236 46829821 -180694757 - L1ME1 LINE L1 -56 6110 5504 1985 128 0 0 chr3 46829821 46830087 -180694491 + AluSx SINE Alu 1 266 -46 2841 216 54 33 chr3 46830087 46830279 -180694299 - L1ME1 LINE L1 -662 5504 5317 662 129 20 0 chr3 46830347 46830448 -180694130 - AluSq/x SINE Alu -181 132 30 305 300 50 68 chr3 46830689 46830902 -180693676 - L1MEd LINE L1 -4891 1228 1022 1744 133 3 89 chr3 46830902 46831239 -180693339 - AluJb SINE Alu -4 308 1 305 300 50 68 chr3 46831239 46831365 -180693213 - L1MEd LINE L1 -5097 1022 895 1208 190 13 95 chr3 46831891 46832207 -180692371 + MLT1D LTR MaLR 1 290 -215 994 152 11 6 chr3 46832207 46832385 -180692193 - MER67C LTR ERV1 0 710 532 2341 95 3 3 chr3 46832444 46832750 -180691828 - AluSx SINE Alu -6 306 1 376 111 0 0 chr3 46832757 46832811 -180691767 - MER67C LTR ERV1 -208 502 449 2289 154 8 5 chr3 46832977 46833353 -180691225 - MER67C LTR ERV1 -263 447 71 333 0 0 0 chr3 46833393 46833430 -180691148 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 1504 163 0 4 chr3 46833452 46833685 -180690893 - AluJo SINE Alu -80 232 1 1656 169 50 20 chr3 46834837 46835138 -180689440 - AluJo SINE Alu -2 310 1 1019 166 35 50 chr3 46835210 46835409 -180689169 + MLT1D LTR MaLR 310 505 0 520 275 70 52 chr3 46835704 46835991 -180688587 - MLT1J LTR MaLR 0 511 220 1960 125 6 35 chr3 46836422 46836733 -180687845 + AluSx SINE Alu 1 302 -10 22 0 0 0 chr3 46836763 46836785 -180687793 + AT_rich Low_complexity Low_complexity 1 22 0 297 167 240 10 chr3 46836864 46836960 -180687618 - MER119 DNA MER1_type -51 532 415 2131 113 140 60 chr3 46836961 46837376 -180687202 - LTR12 LTR ERV1 -266 448 1 1712 89 8 25 chr3 46837377 46837516 -180687062 - AluSq SINE Alu -81 232 97 2415 116 38 35 chr3 46837516 46837836 -180686742 + MER48 LTR ERV1 1 324 -74 2308 89 0 0 chr3 46837836 46838128 -180686450 + AluY SINE Alu 13 304 -7 2415 116 38 35 chr3 46838128 46838204 -180686374 + MER48 LTR ERV1 324 398 0 1712 89 8 25 chr3 46838204 46838300 -180686278 - AluSq SINE Alu -216 97 1 856 127 16 0 chr3 46839534 46839660 -180684918 - FLAM_C SINE Alu -4 129 2 21 57 0 0 chr3 46839929 46839964 -180684614 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr3 46840048 46840072 -180684506 + AT_rich Low_complexity Low_complexity 1 24 0 1509 91 165 0 chr3 46840526 46840769 -180683809 - LTR7 LTR ERV1 -167 283 1 504 247 13 40 chr3 46840769 46840919 -180683659 - L1MEc LINE L1 -4057 2339 2194 957 181 112 101 chr3 46840919 46841460 -180683118 - LTR34 LTR ERV1 -4 695 1 204 122 0 0 chr3 46841461 46841502 -180683076 + (T)n Simple_repeat Simple_repeat 1 41 0 6743 20 1 0 chr3 46841503 46842233 -180682345 - L1PA2 LINE L1 -1 6154 5424 11445 21 1 0 chr3 46842233 46843585 -180680993 + L1PA2 LINE L1 4086 5438 -717 857 162 114 41 chr3 46843639 46844023 -180680555 - LTR7 LTR ERV1 0 450 1 1095 264 60 22 chr3 46844023 46844637 -180679941 - L1MEc LINE L1 -861 1715 1492 984 76 0 0 chr3 46844637 46844768 -180679810 - MER41A LTR ERV1 0 554 424 615 91 0 0 chr3 46844768 46844845 -180679733 + AluSg SINE Alu 58 134 -176 2177 108 0 0 chr3 46844845 46845193 -180679385 + AluSx SINE Alu 1 348 0 334 293 0 10 chr3 46845206 46845305 -180679273 + L1ME2 LINE L1 5970 6067 -97 603 293 118 31 chr3 46845310 46845631 -180678947 + MLT1G1 LTR MaLR 16 364 -231 239 326 22 0 chr3 46845702 46845791 -180678787 + MLT1G1 LTR MaLR 464 554 -1 326 232 84 21 chr3 46845796 46845891 -180678687 + L1ME3A LINE L1 6062 6162 -8 23 0 0 0 chr3 46845952 46845975 -180678603 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 46846161 46846183 -180678395 + AT_rich Low_complexity Low_complexity 1 22 0 343 310 114 57 chr3 46846272 46846834 -180677744 + L1M4 LINE L1 4421 5014 -1132 216 343 0 0 chr3 46847157 46847224 -180677354 + GA-rich Low_complexity Low_complexity 5 71 0 2032 211 84 27 chr3 46847252 46847741 -180676837 - HsTC2 DNA Tc2 -1295 603 87 969 169 14 0 chr3 46847770 46847950 -180676628 + AluSg SINE Alu 133 314 0 1828 141 3 53 chr3 46849209 46849540 -180675038 - AluSx SINE Alu 0 312 1 270 300 0 0 chr3 46850512 46850602 -180673976 + A-rich Low_complexity Low_complexity 1 90 0 1726 181 94 39 chr3 46851156 46851293 -180673285 + MSTB1 LTR MaLR 1 129 -303 225 0 0 0 chr3 46851293 46851318 -180673260 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1763 150 29 14 chr3 46851320 46851600 -180672978 - AluJo SINE Alu -26 286 3 1726 181 94 39 chr3 46851600 46851841 -180672737 + MSTB1 LTR MaLR 129 403 -29 1270 128 201 24 chr3 46851841 46852090 -180672488 - AluJb SINE Alu -5 307 15 302 26 53 0 chr3 46852092 46852130 -180672448 + MSTB1 LTR MaLR 393 432 0 440 316 30 6 chr3 46852433 46852601 -180671977 + MIR SINE MIR 88 259 -3 277 307 100 29 chr3 46853558 46853698 -180670880 + L2 LINE L2 3123 3272 0 226 275 88 12 chr3 46853894 46853974 -180670604 + MIR SINE MIR 20 105 -157 333 306 49 28 chr3 46854245 46854389 -180670189 + LTR16C LTR ERVL 345 491 0 1394 260 88 10 chr3 46854817 46855228 -180669350 - MER70B LTR ERVL -132 446 4 214 354 23 23 chr3 46855287 46855417 -180669161 + L2 LINE L2 2446 2575 -739 411 294 104 89 chr3 46855651 46855998 -180668580 + L2 LINE L2 2888 3239 -33 433 274 133 7 chr3 46856048 46856261 -180668317 - MIR SINE MIR -12 250 10 353 283 67 63 chr3 46857010 46857233 -180667345 - MIR SINE MIR -19 243 20 822 159 32 0 chr3 46857909 46858035 -180666543 + AluJo SINE Alu 88 217 -95 922 207 69 16 chr3 46858046 46858292 -180666286 - Charlie1 DNA MER1_type -15 2746 2488 2111 159 25 16 chr3 46859031 46859396 -180665182 - L1MB2 LINE L1 -2 6169 5802 807 182 79 144 chr3 46860802 46861259 -180663319 + LTR28 LTR ERV1 1 1225 -530 2360 214 89 39 chr3 46862827 46862931 -180661647 - MLT1E2 LTR MaLR 0 626 529 1956 154 0 7 chr3 46862931 46863215 -180661363 + AluJb SINE Alu 1 116 -196 725 76 9 0 chr3 46863215 46863320 -180661258 + (GAAA)n Simple_repeat Simple_repeat 2 107 0 1956 154 0 7 chr3 46863320 46863516 -180661062 + AluJb SINE Alu 116 312 0 2360 214 89 39 chr3 46863516 46864005 -180660573 - MLT1E2 LTR MaLR -97 529 3 617 294 92 62 chr3 46864016 46864452 -180660126 - LTR16C LTR ERVL 0 491 43 781 271 68 29 chr3 46865089 46865369 -180659209 - MER54A LTR ERVL -310 591 301 267 280 110 34 chr3 46865505 46865623 -180658955 + L2 LINE L2 3123 3249 -23 180 77 0 0 chr3 46865941 46865967 -180658611 + (GA)n Simple_repeat Simple_repeat 2 27 0 342 231 33 22 chr3 46866645 46866736 -180657842 - L2 LINE L2 0 3272 3181 * 746 311 100 39 chr3 46866708 46867190 -180657388 - L2 LINE L2 -654 2660 2150 281 256 22 184 chr3 46867186 46867409 -180657169 - L2 LINE L2 -81 3191 3005 * 18736 139 23 88 chr3 46868718 46872729 -180651849 + L1P LINE L1 12 3763 -2383 16117 111 27 28 chr3 46872839 46875457 -180649121 + HERVH LTR ERV1 437 2986 -4727 829 159 41 0 chr3 46875452 46875597 -180648981 + HERVH LTR ERV1 3140 3290 -4423 * 3498 101 4 6 chr3 46875587 46876090 -180648488 + HERVH LTR ERV1 3492 3993 -3720 3316 126 8 4 chr3 46876092 46876576 -180648002 + HERVH LTR ERV1 4488 4973 -2740 7113 126 42 14 chr3 46876755 46877910 -180646668 + Tigger3b DNA MER2_type 45 1231 0 429 334 68 29 chr3 46877922 46878230 -180646348 - L1MEc LINE L1 -6022 374 55 2396 101 0 0 chr3 46878247 46878555 -180646023 - AluSg SINE Alu -2 308 1 953 313 261 34 chr3 46880909 46882758 -180641820 + L2 LINE L2 302 2570 -744 2427 76 0 3 chr3 46882845 46883147 -180641431 + AluY SINE Alu 1 301 -10 347 284 92 96 chr3 46883255 46883712 -180640866 + L2 LINE L2 2818 3272 0 328 340 78 56 chr3 46884489 46884721 -180639857 - L2 LINE L2 -85 3187 2951 539 238 175 0 chr3 46886644 46886804 -180637774 + MIR SINE MIR 39 226 -36 28 0 0 0 chr3 46886907 46886935 -180637643 + AT_rich Low_complexity Low_complexity 1 28 0 579 267 52 27 chr3 46887042 46887404 -180637174 - L1MC/D LINE L1 -748 5398 5166 1595 150 51 67 chr3 46887404 46887718 -180636860 - AluJo SINE Alu -3 309 1 579 267 52 27 chr3 46887718 46887743 -180636835 - L1MC/D LINE L1 -980 5166 5143 468 305 73 47 chr3 46887768 46887987 -180636591 - L1MC/D LINE L1 -1227 4919 4707 2500 77 3 0 chr3 46887987 46888297 -180636281 - AluY SINE Alu 0 311 1 468 305 73 47 chr3 46888297 46888625 -180635953 - L1MC/D LINE L1 -1439 4707 4358 365 338 103 33 chr3 46888627 46888958 -180635620 + L2 LINE L2 2164 2517 -797 284 177 65 0 chr3 46889054 46889116 -180635462 + L2 LINE L2 3248 3313 0 * 563 319 190 23 chr3 46889114 46889881 -180634697 + L2 LINE L2 2343 3243 -70 2254 117 0 0 chr3 46891040 46891338 -180633240 - AluSx SINE Alu -14 298 1 597 269 19 0 chr3 46891914 46892070 -180632508 + MIR SINE MIR 104 262 0 245 261 43 33 chr3 46894175 46894267 -180630311 - L2 LINE L2 -2 3270 3178 424 236 153 0 chr3 46894769 46894926 -180629652 + MIR SINE MIR 74 254 -8 545 250 67 76 chr3 46895434 46895658 -180628920 - MLT1J LTR MaLR -3 508 287 180 0 0 0 chr3 46895924 46895944 -180628634 + (T)n Simple_repeat Simple_repeat 1 20 0 267 136 0 0 chr3 46896146 46896205 -180628373 + (C)n Simple_repeat Simple_repeat 1 59 0 183 42 0 0 chr3 46896242 46896266 -180628312 + (C)n Simple_repeat Simple_repeat 1 24 0 211 204 0 0 chr3 46896285 46896339 -180628239 + C-rich Low_complexity Low_complexity 1 54 0 478 218 35 24 chr3 46896339 46896509 -180628069 + AluJb SINE Alu 137 308 -4 413 265 115 39 chr3 46896513 46896792 -180627786 + L1M4 LINE L1 3117 3416 -2730 2523 64 3 3 chr3 46896920 46897231 -180627347 - AluY SINE Alu 0 311 1 2031 119 16 26 chr3 46897231 46897393 -180627185 - AluSx SINE Alu -10 302 141 2223 113 3 0 chr3 46897393 46897695 -180626883 - AluSp SINE Alu -10 303 1 2031 119 16 26 chr3 46897695 46897834 -180626744 - AluSx SINE Alu -171 141 2 225 299 41 21 chr3 46898269 46898366 -180626212 + MIR SINE MIR 28 126 -136 2161 184 38 10 chr3 46898466 46898858 -180625720 - MER57A LTR ERV1 0 403 1 1889 102 0 0 chr3 46899075 46899331 -180625247 - AluSg SINE Alu -4 306 51 200 276 143 10 chr3 46900785 46900883 -180623695 + L2 LINE L2 3184 3294 -19 215 301 59 59 chr3 46900932 46901068 -180623510 + L2 LINE L2 3136 3271 -1 266 305 175 25 chr3 46901162 46901516 -180623062 - L2 LINE L2 -1219 2095 1689 808 233 57 41 chr3 46902150 46902395 -180622183 - L1ME3 LINE L1 -129 6033 5785 34 0 0 0 chr3 46902403 46902437 -180622141 + AT_rich Low_complexity Low_complexity 1 34 0 724 226 120 15 chr3 46903446 46903788 -180620790 + LTR33A LTR ERVL 297 502 -21 220 346 13 0 chr3 46904063 46904141 -180620437 - L2 LINE L2 0 3313 3235 580 125 10 42 chr3 46904290 46904386 -180620192 - L1MC1 LINE L1 -13 6320 6228 207 0 0 0 chr3 46904391 46904414 -180620164 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 205 295 27 54 chr3 46906947 46907096 -180617482 + L2 LINE L2 1744 1888 -1426 1496 256 66 24 chr3 46907099 46907556 -180617022 - LTR16C LTR ERVL -12 479 4 216 374 166 14 chr3 46907561 46908048 -180616530 + L2 LINE L2 1892 2452 -862 205 233 0 0 chr3 46908191 46908234 -180616344 - L2 LINE L2 -1756 1558 1516 444 358 51 13 chr3 46908497 46908810 -180615768 + L2 LINE L2 872 1196 -2118 1168 216 118 17 chr3 46908988 46909284 -180615294 - L1ME1 LINE L1 -6 6160 5835 2371 92 3 0 chr3 46909284 46909579 -180614999 - AluSg SINE Alu -14 296 1 248 260 52 21 chr3 46909583 46909679 -180614899 + L2 LINE L2 1038 1136 -2178 256 213 0 21 chr3 46909703 46909797 -180614781 + (TA)n Simple_repeat Simple_repeat 1 92 0 180 97 0 0 chr3 46909807 46909838 -180614740 + (TG)n Simple_repeat Simple_repeat 2 32 0 3239 199 70 101 chr3 46909849 46910509 -180614069 - L1ME1 LINE L1 -376 5790 5111 286 236 0 79 chr3 46910509 46910598 -180613980 + LTR16C LTR ERVL 228 309 -182 3239 199 70 101 chr3 46910598 46911523 -180613055 - L1ME1 LINE L1 -1055 5111 4160 257 290 130 58 chr3 46912631 46912769 -180611809 + MIR SINE MIR 51 198 -64 516 32 0 0 chr3 46915690 46915752 -180608826 + (TG)n Simple_repeat Simple_repeat 2 63 0 468 302 149 23 chr3 46916393 46916741 -180607837 + L2 LINE L2 2922 3313 0 24 32 0 0 chr3 46917390 46917421 -180607157 + AT_rich Low_complexity Low_complexity 1 31 0 309 51 0 0 chr3 46921270 46921309 -180603269 + (TG)n Simple_repeat Simple_repeat 1 39 0 335 89 18 0 chr3 46921309 46921365 -180603213 + (GA)n Simple_repeat Simple_repeat 2 58 0 1957 134 10 16 chr3 46921678 46921983 -180602595 - AluSx SINE Alu -9 303 1 261 320 16 8 chr3 46922814 46922936 -180601642 + MIR SINE MIR 4 126 -136 376 246 0 45 chr3 46923040 46923150 -180601428 + L2 LINE L2 3123 3227 -86 737 278 6 10 chr3 46924025 46924298 -180600280 - L1 LINE L1 -1398 4748 4477 372 250 12 0 chr3 46924545 46924629 -180599949 + MIR SINE MIR 48 132 -130 1446 194 41 10 chr3 46925587 46925901 -180598677 - MER33 DNA MER1_type 0 324 1 2165 109 3 10 chr3 46926432 46926734 -180597844 + AluSx SINE Alu 1 300 -12 429 342 67 21 chr3 46927546 46927786 -180596792 - Charlie8 DNA MER1_type -2137 280 30 243 0 0 0 chr3 46927933 46927960 -180596618 + (TG)n Simple_repeat Simple_repeat 2 28 0 255 266 0 46 chr3 46929256 46929365 -180595213 - L1ME1 LINE L1 -220 5946 5843 818 294 84 37 chr3 46929375 46930150 -180594428 - L1ME1 LINE L1 -389 5781 4969 1921 94 101 4 chr3 46930164 46930441 -180594137 - AluY SINE Alu -2 309 6 6541 104 28 8 chr3 46930451 46931675 -180592903 - L1PA15 LINE L1 -6 6159 4923 11349 227 37 20 chr3 46931675 46933328 -180591250 - L1P LINE L1 -2158 3988 2263 233 57 29 0 chr3 46933328 46933363 -180591215 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 11349 227 37 20 chr3 46933363 46934699 -180589879 - L1P LINE L1 -3883 2263 950 465 330 51 20 chr3 46935841 46936135 -180588443 - L1PA12 LINE L1 -7278 303 1 2221 104 0 7 chr3 46936874 46937173 -180587405 - AluSg SINE Alu -13 297 1 297 316 90 19 chr3 46937620 46937775 -180586803 - MER103 DNA DNA 0 166 1 631 234 139 0 chr3 46938220 46938378 -180586200 - MER5A DNA MER1_type 0 189 10 426 286 149 17 chr3 46939692 46939867 -180584711 + MLT1J LTR MaLR 1 198 -313 572 292 52 37 chr3 46939935 46940211 -180584367 + MLT1H LTR MaLR 3 320 -229 444 251 64 53 chr3 46940355 46940542 -180584036 + L1MC/D LINE L1 973 1161 -4958 2070 172 20 0 chr3 46940546 46941108 -180583470 + L1P5 LINE L1 4905 5478 -673 1032 58 0 0 chr3 46941108 46941229 -180583349 + AluY SINE Alu 1 121 -190 458 253 88 6 chr3 46941359 46941529 -180583049 - L1MDa LINE L1 -4757 1783 1600 477 283 91 63 chr3 46941558 46941954 -180582624 + L1ME3A LINE L1 5452 5858 -312 466 196 72 0 chr3 46943712 46943809 -180580769 + MER63A DNA MER1_type 11 114 0 2289 100 3 3 chr3 46943817 46944118 -180580460 - AluSq SINE Alu -10 303 3 354 264 0 0 chr3 46944191 46944263 -180580315 + MER63A DNA MER1_type 139 210 0 2332 84 0 57 chr3 46944470 46944802 -180579776 - AluSq SINE Alu 0 313 1 266 276 62 55 chr3 46945344 46945489 -180579089 + L1MC4 LINE L1 6760 6905 -1137 180 226 118 65 chr3 46948071 46948164 -180576414 - MIR SINE MIR -124 138 41 275 151 94 0 chr3 46948580 46948633 -180575945 - MIR SINE MIR -9 253 196 261 356 48 0 chr3 46948761 46948907 -180575671 - MIR SINE MIR -74 188 36 245 238 82 78 chr3 46950468 46950674 -180573904 + L1MC/D LINE L1 2128 2334 -3795 2011 168 115 3 chr3 46951252 46951634 -180572944 - MSTB LTR MaLR 0 426 2 543 164 0 0 chr3 46952034 46952138 -180572440 + CT-rich Low_complexity Low_complexity 2 105 0 234 359 51 18 chr3 46952302 46952636 -180571942 + L1MC/D LINE L1 3359 3703 -2426 184 279 179 14 chr3 46952675 46952815 -180571763 + L2 LINE L2 2231 2393 -921 394 365 68 32 chr3 46952906 46953306 -180571272 + L2 LINE L2 2553 2966 -348 2031 237 121 33 chr3 46953310 46953530 -180571048 - Charlie2 DNA MER1_type -6 2856 2657 2194 66 40 4 chr3 46953530 46953825 -180570753 - AluY SINE Alu 0 305 1 2031 237 121 33 chr3 46953825 46954247 -180570331 - Charlie2 DNA MER1_type -205 2657 2274 1373 190 92 11 chr3 46954247 46954531 -180570047 - AluJo SINE Alu -5 307 1 2031 237 121 33 chr3 46954531 46954803 -180569775 - Charlie2 DNA MER1_type -588 2274 1859 2062 248 92 27 chr3 46954959 46955515 -180569063 + MLT1E LTR MaLR 2 593 0 412 279 121 43 chr3 46955554 46955967 -180568611 + L1MC/D LINE L1 4158 4548 -1581 629 272 111 0 chr3 46956049 46956266 -180568312 + L1MC/D LINE L1 5519 5759 -2032 210 71 0 0 chr3 46956267 46956295 -180568283 + (A)n Simple_repeat Simple_repeat 1 28 0 997 120 133 0 chr3 46956351 46956501 -180568077 + AluSg SINE Alu 1 170 -140 435 119 0 0 chr3 46956629 46956696 -180567882 + (TA)n Simple_repeat Simple_repeat 1 67 0 507 328 51 3 chr3 46957182 46957417 -180567161 + MIR SINE MIR 5 250 -12 2061 228 25 47 chr3 46958387 46958429 -180566149 - MLT2B1 LTR ERVL 0 520 479 306 73 0 0 chr3 46958429 46958470 -180566108 + (TG)n Simple_repeat Simple_repeat 1 41 0 2061 228 25 47 chr3 46958470 46958954 -180565624 - MLT2B1 LTR ERVL -41 479 6 201 319 42 56 chr3 46959380 46959524 -180565054 + MIR3 SINE MIR 6 147 -61 22 0 0 0 chr3 46959592 46959614 -180564964 + AT_rich Low_complexity Low_complexity 1 22 0 195 267 0 0 chr3 46961668 46961713 -180562865 - MIR SINE MIR -70 192 148 461 258 0 0 chr3 46961829 46961926 -180562652 - MIR SINE MIR -115 147 51 2246 121 55 9 chr3 46961928 46962274 -180562304 + THE1B LTR MaLR 3 364 0 1015 198 0 0 chr3 46962689 46962851 -180561727 + FRAM SINE Alu 4 165 -1 2141 124 3 7 chr3 46962864 46963171 -180561407 + AluSg SINE Alu 2 307 -3 408 306 105 9 chr3 46963287 46963496 -180561082 - MIR SINE MIR -7 255 18 275 300 67 0 chr3 46963889 46963979 -180560599 + HAL1 LINE L1 1 96 -2411 825 166 6 38 chr3 46964272 46964429 -180560149 + THE1C LTR MaLR 1 152 -223 463 92 15 0 chr3 46964428 46964493 -180560085 + THE1C LTR MaLR 310 375 0 * 379 337 12 12 chr3 46965020 46965183 -180559395 - MIR SINE MIR -70 192 30 1443 125 19 0 chr3 46968041 46968257 -180556321 + HERVH LTR ERV1 5600 5819 -1894 * 2401 101 53 13 chr3 46968255 46968632 -180555946 + HERVH LTR ERV1 7322 7713 0 2865 88 98 5 chr3 46968632 46969042 -180555536 + LTR7 LTR ERV1 1 448 -2 251 130 22 22 chr3 46969044 46969090 -180555488 + L1MEc LINE L1 2335 2380 -4016 2422 84 47 0 chr3 46969094 46969416 -180555162 + LTR9B LTR ERV1 223 559 -85 245 239 37 55 chr3 46969444 46969553 -180555025 + L1MEc LINE L1 2374 2480 -3916 190 265 48 72 chr3 46970732 46970815 -180553763 + MIR SINE MIR 109 189 -73 2540 141 52 0 chr3 46971019 46971423 -180553155 - MER41B LTR ERV1 -189 446 22 471 169 0 0 chr3 46971428 46971499 -180553079 + FLAM SINE Alu 50 120 -23 351 0 0 0 chr3 46971499 46971538 -180553040 + (TAAAA)n Simple_repeat Simple_repeat 2 40 0 568 203 10 124 chr3 46971837 46972039 -180552539 + MER46C DNA MER2_type 17 195 -143 426 268 78 28 chr3 46972063 46972242 -180552336 + HAL1 LINE L1 2165 2352 -155 1145 300 66 24 chr3 46972259 46972893 -180551685 + L1MEc LINE L1 3575 4235 -1980 629 244 32 32 chr3 46973050 46973229 -180551349 + L1MEc LINE L1 4684 4865 -1350 2054 130 81 32 chr3 46973229 46973576 -180551002 + THE1B LTR MaLR 1 364 0 629 244 32 32 chr3 46973576 46973617 -180550961 + L1MEc LINE L1 4864 4904 -1311 820 146 15 0 chr3 46973746 46973876 -180550702 + AluSq/x SINE Alu 1 132 -181 240 35 0 0 chr3 46975050 46975079 -180549499 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 351 265 215 14 chr3 46975880 46976159 -180548419 + L2 LINE L2 2062 2396 -918 308 310 97 0 chr3 46976359 46976514 -180548064 - MIR SINE MIR -40 222 53 207 285 195 70 chr3 46976630 46977122 -180547456 + L2 LINE L2 2126 2696 -618 1723 178 24 3 chr3 46977122 46977414 -180547164 - AluJb SINE Alu -14 298 1 207 285 195 70 chr3 46977414 46977476 -180547102 + L2 LINE L2 2696 2749 -565 254 261 92 78 chr3 46977642 46977860 -180546718 + L2 LINE L2 2735 2955 -359 238 349 12 0 chr3 46977966 46978052 -180546526 + L2 LINE L2 3182 3268 -4 2311 105 0 3 chr3 46978614 46978927 -180545651 + AluSx SINE Alu 1 312 0 237 163 73 114 chr3 46980565 46980688 -180543890 + Charlie5 DNA MER1_type 77 194 -2418 556 134 235 0 chr3 46980692 46980841 -180543737 + Charlie5 DNA MER1_type 2352 2535 -77 758 146 0 31 chr3 46980842 46980972 -180543606 + FLAM_C SINE Alu 2 127 -16 458 157 90 0 chr3 46980976 46981065 -180543513 + Charlie5 DNA MER1_type 2528 2624 0 22 0 0 0 chr3 46981424 46981446 -180543132 + AT_rich Low_complexity Low_complexity 1 22 0 2342 68 27 0 chr3 46981448 46981742 -180542836 + AluY SINE Alu 1 302 -9 2004 105 51 24 chr3 46983855 46984150 -180540428 - AluSp SINE Alu -10 303 1 1124 125 6 0 chr3 46984200 46984360 -180540218 + MLT2C1 LTR ERVL 1 161 -236 243 250 117 83 chr3 46984468 46984569 -180540009 + MIR SINE MIR 3 110 -98 2141 121 7 0 chr3 46984569 46984867 -180539711 - AluSx SINE Alu -12 300 1 243 250 117 83 chr3 46984867 46984885 -180539693 + MIR SINE MIR 110 126 -82 1763 154 4 0 chr3 46984938 46985210 -180539368 + AluJo SINE Alu 10 282 -30 510 271 122 50 chr3 46985653 46985834 -180538744 + MIR3 SINE MIR 7 200 -8 192 291 233 19 chr3 46986340 46986550 -180538028 - L2 LINE L2 -366 2948 2694 1847 68 0 0 chr3 46986789 46987009 -180537569 + AluY SINE Alu 82 301 -10 280 276 123 29 chr3 46987488 46987658 -180536920 + MIR SINE MIR 71 256 -6 2334 93 3 0 chr3 46987860 46988160 -180536418 - AluSq SINE Alu -12 301 1 466 333 30 35 chr3 46988393 46988591 -180535987 + MIR3 SINE MIR 1 197 -11 301 183 211 0 chr3 46989162 46989233 -180535345 - L2 LINE L2 -1 3312 3227 544 219 35 59 chr3 46989330 46989499 -180535079 - L1MC4 LINE L1 -295 7747 7583 412 255 0 10 chr3 46989649 46989747 -180534831 - MIR SINE MIR -97 165 69 605 179 21 43 chr3 46990353 46990493 -180534085 - LTR45 LTR ERV1 0 525 389 27455 37 13 2 chr3 46990953 46996733 -180527845 + L1P2 LINE L1 4 5813 -341 13207 94 3 2 chr3 46996874 46999024 -180525554 - L1P3 LINE L1 -571 5583 3433 2312 109 36 46 chr3 46999278 46999692 -180524886 + L1PB3 LINE L1 5460 5869 -282 7019 61 11 0 chr3 46999692 47001004 -180523574 - L1PA6 LINE L1 0 6469 5155 23374 83 6 10 chr3 47001121 47004578 -180520000 - L1PA6 LINE L1 -1855 4606 1162 563 92 0 0 chr3 47004576 47004652 -180519926 - L1PA6 LINE L1 -6365 96 21 * 1721 150 26 13 chr3 47004652 47004958 -180519620 + L1PB3 LINE L1 5840 6149 -5 396 300 40 27 chr3 47004964 47005114 -180519464 + L1MEc LINE L1 1266 1417 -4979 873 215 20 10 chr3 47005114 47005314 -180519264 - MLT1A2 LTR MaLR 0 374 173 1883 164 3 3 chr3 47005468 47005797 -180518781 - L1M3 LINE L1 -389 5782 5454 307 137 0 0 chr3 47006796 47006847 -180517731 - L1P LINE L1 -1592 4554 4504 276 30 0 0 chr3 47058236 47058269 -180466309 + (A)n Simple_repeat Simple_repeat 1 33 0 388 323 102 31 chr3 47058382 47058608 -180465970 - L1MEc LINE L1 -4364 2032 1791 4947 91 5 42 chr3 47058621 47059413 -180465165 - L1PB2 LINE L1 -4 6147 5385 7523 33 0 1 chr3 47059413 47059424 -180465154 - L1PA3 LINE L1 0 6155 6145 210 37 0 0 chr3 47059424 47059451 -180465127 + (TTTAA)n Simple_repeat Simple_repeat 4 30 0 7523 33 0 1 chr3 47059451 47060952 -180463626 - L1PA3 LINE L1 -10 6145 4646 531 80 91 0 chr3 47061065 47061547 -180463031 + (TA)n Simple_repeat Simple_repeat 1 525 0 195 42 0 0 chr3 47061677 47061701 -180462877 + (TTTTG)n Simple_repeat Simple_repeat 3 26 0 1536 229 97 2 chr3 47062114 47062598 -180461980 + L1ME1 LINE L1 5555 6084 -82 303 189 189 11 chr3 47062569 47062664 -180461914 + L1MA9 LINE L1 6201 6312 0 * 2325 78 10 0 chr3 47063779 47064072 -180460506 - AluY SINE Alu -15 296 1 362 224 12 12 chr3 47064546 47064631 -180459947 - MIR SINE MIR -1 261 177 190 354 0 37 chr3 47066247 47066329 -180458249 + MER5A DNA MER1_type 110 188 -1 355 183 126 69 chr3 47067595 47067709 -180456869 - LTR16A1 LTR ERVL 0 457 328 2473 143 60 2 chr3 47067709 47068108 -180456470 - MSTB LTR MaLR 0 426 5 355 183 126 69 chr3 47068108 47068168 -180456410 - LTR16A1 LTR ERVL -129 328 273 2567 56 0 0 chr3 47069819 47070125 -180454453 - AluY SINE Alu -5 306 1 999 121 53 0 chr3 47070504 47070694 -180453884 - L1MA6 LINE L1 0 6300 6101 3852 39 2 0 chr3 47070702 47071162 -180453416 - L1PA5 LINE L1 -7 6147 5687 2331 35 0 0 chr3 47071162 47071446 -180453132 + L1PA5 LINE L1 5395 5678 -476 1092 127 10 15 chr3 47071441 47071638 -180452940 - L1MA7 LINE L1 -182 6109 5914 * 3409 162 32 1 chr3 47071756 47072683 -180451895 - L1MA7 LINE L1 -395 5896 4942 1004 162 10 0 chr3 47072677 47072874 -180451704 + L1 LINE L1 3896 4094 -2052 * 604 38 0 0 chr3 47072874 47072947 -180451631 + L1PA3 LINE L1 6074 6152 -3 21 0 0 0 chr3 47072947 47072968 -180451610 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 47073004 47073030 -180451548 + AT_rich Low_complexity Low_complexity 1 26 0 675 156 8 0 chr3 47073069 47073191 -180451387 + L1 LINE L1 4077 4199 -1947 207 200 0 0 chr3 47073279 47073314 -180451264 + MER91 DNA MER1_type 105 139 -1 * 1036 273 98 12 chr3 47073314 47073716 -180450862 - L2 LINE L2 -272 3041 2606 345 265 71 35 chr3 47073717 47073887 -180450691 - L2 LINE L2 -51 3262 3087 1057 296 58 26 chr3 47074084 47074685 -180449893 + L2 LINE L2 2690 3313 0 21 36 0 0 chr3 47075875 47075903 -180448675 + AT_rich Low_complexity Low_complexity 1 28 0 5422 58 24 6 chr3 47076846 47077974 -180446604 - SVA Other Other -955 1386 7 525 157 12 0 chr3 47078880 47078963 -180445615 - AluS SINE Alu -216 97 14 2041 132 4 0 chr3 47079945 47080226 -180444352 - AluSx SINE Alu -25 287 6 1383 271 48 19 chr3 47080239 47080781 -180443797 - L1PBa LINE L1 -6300 563 6 1655 139 42 3 chr3 47080795 47081082 -180443496 - MER47A DNA MER2_type -68 298 1 433 319 43 53 chr3 47081126 47081183 -180443395 - LTR16C LTR ERVL -57 434 378 360 0 0 0 chr3 47081183 47081223 -180443355 + (TCTCCC)n Simple_repeat Simple_repeat 5 44 0 9076 74 41 45 chr3 47081223 47082603 -180441975 + SVA Other Other 13 1386 0 433 319 43 53 chr3 47082603 47082826 -180441752 - LTR16C LTR ERVL -111 380 156 453 261 99 9 chr3 47082874 47083085 -180441493 + L1MB8 LINE L1 4608 4837 -1309 1334 189 16 4 chr3 47083085 47083333 -180441245 - MLT1A1 LTR MaLR 0 365 115 284 314 200 14 chr3 47083408 47083548 -180441030 + L2 LINE L2 3107 3272 0 1250 184 27 2 chr3 47083921 47084321 -180440257 + L1MB8 LINE L1 4931 5400 -746 8357 43 1 8 chr3 47084321 47085380 -180439198 + HERV17 LTR ERV1 4969 6019 -2607 285 51 0 0 chr3 47085373 47085412 -180439166 + HERV17 LTR ERV1 7510 7548 -1078 * 2389 45 0 0 chr3 47085402 47085693 -180438885 + HERV17 LTR ERV1 8335 8625 -1 2269 50 43 34 chr3 47085694 47086017 -180438561 + LTR17 LTR ERV1 1 326 -454 3438 189 38 12 chr3 47086032 47086806 -180437772 + L1MB8 LINE L1 5385 6178 0 2726 209 62 26 chr3 47087036 47087263 -180437315 + L1ME1 LINE L1 5378 5595 -571 2262 110 3 0 chr3 47087263 47087562 -180437016 + AluSx SINE Alu 1 300 -12 2726 209 62 26 chr3 47087562 47088093 -180436485 + L1ME1 LINE L1 5595 6163 -3 22 0 0 0 chr3 47088384 47088406 -180436172 + AT_rich Low_complexity Low_complexity 1 22 0 1127 66 0 0 chr3 47089207 47089359 -180435219 + L1PA4 LINE L1 6004 6155 0 369 307 153 15 chr3 47089367 47089569 -180435009 + MIR SINE MIR 23 252 -10 408 312 15 73 chr3 47089853 47090058 -180434520 - MIR3 SINE MIR -1 207 15 596 267 13 0 chr3 47091110 47091260 -180433318 + MLT1J2 LTR MaLR 1 152 -298 269 274 48 0 chr3 47091349 47091433 -180433145 + MLT1J2 LTR MaLR 358 445 -5 304 314 59 0 chr3 47092942 47093060 -180431518 - L1ME4a LINE L1 -154 5967 5843 2178 115 0 0 chr3 47093270 47093575 -180431003 + AluSg SINE Alu 5 309 -1 1666 265 45 36 chr3 47095692 47096246 -180428332 - MLT1H1 LTR MaLR 0 555 1 474 281 75 35 chr3 47096368 47096596 -180427982 - HERVL LTR ERVL -732 4922 4686 30 83 0 0 chr3 47096772 47096844 -180427734 + AT_rich Low_complexity Low_complexity 1 72 0 46 0 0 0 chr3 47096923 47096969 -180427609 + AT_rich Low_complexity Low_complexity 1 46 0 440 308 60 16 chr3 47097228 47097410 -180427168 - HERVL LTR ERVL -1099 4555 4366 324 349 24 6 chr3 47098146 47098315 -180426263 + L2 LINE L2 2680 2851 -463 267 247 123 0 chr3 47098359 47098440 -180426138 - LTR33 LTR ERVL -428 93 3 1687 184 6 22 chr3 47100152 47100547 -180424031 + AluJo SINE Alu 1 390 0 1517 211 169 22 chr3 47100615 47101017 -180423561 - MLT1C LTR MaLR -6 461 1 297 0 0 0 chr3 47101215 47101248 -180423330 + (A)n Simple_repeat Simple_repeat 1 33 0 4911 133 65 22 chr3 47101385 47102376 -180422202 - L1MCa LINE L1 -746 5680 4733 1984 141 40 0 chr3 47102376 47102674 -180421904 - AluSx SINE Alu 0 312 3 4911 133 65 22 chr3 47102674 47103038 -180421540 - L1MCa LINE L1 -1693 4733 1359 21 0 0 0 chr3 47103038 47103059 -180421519 + AT_rich Low_complexity Low_complexity 1 21 0 413 167 0 0 chr3 47103060 47103126 -180421452 - LTR8 LTR ERV1 -105 586 521 6022 157 18 10 chr3 47103126 47103515 -180421063 - L1PA11 LINE L1 -1 6173 5788 2252 94 7 7 chr3 47103515 47103822 -180420756 - AluSc SINE Alu -2 307 1 6022 157 18 10 chr3 47103822 47104886 -180419692 - L1PA11 LINE L1 -386 5788 4712 2622 226 15 9 chr3 47105069 47106131 -180418447 - L1P4 LINE L1 -393 5781 4712 283 175 0 0 chr3 47106135 47106192 -180418386 - L1MCa LINE L1 -5009 1419 1363 1320 173 154 29 chr3 47106243 47106549 -180418029 + MER2 DNA MER2_type 1 344 0 855 302 69 32 chr3 47108172 47108636 -180415942 - L2 LINE L2 -1171 2143 1663 194 176 29 0 chr3 47108843 47108877 -180415701 - MIR SINE MIR -110 98 64 1914 94 8 0 chr3 47109172 47109426 -180415152 - AluSc SINE Alu -7 302 47 15982 156 20 9 chr3 47109612 47114600 -180409978 + L1MA2 LINE L1 2687 7723 0 204 258 32 0 chr3 47114682 47114775 -180409803 + (TA)n Simple_repeat Simple_repeat 1 96 0 3214 232 29 29 chr3 47115172 47116132 -180408446 + L1M1 LINE L1 2585 3544 -4021 553 121 0 0 chr3 47116132 47116215 -180408363 - AluS SINE Alu -230 83 1 14974 185 25 6 chr3 47116215 47119703 -180404875 + L1M1 LINE L1 3539 7094 -625 2245 96 3 0 chr3 47119889 47120181 -180404397 - AluSx SINE Alu -19 293 1 478 286 15 82 chr3 47120991 47121197 -180403381 + MIR SINE MIR 2 193 -69 354 85 0 0 chr3 47121248 47121295 -180403283 - MADE1 DNA Mariner -33 47 1 6019 123 19 31 chr3 47121335 47122354 -180402224 + L1MA3 LINE L1 1855 2860 -4705 2764 120 139 36 chr3 47122380 47122914 -180401664 + LTR1 LTR ERV1 196 784 -1 11605 152 49 21 chr3 47122914 47125756 -180398822 + L1MA3 LINE L1 4267 7216 -508 2432 78 7 0 chr3 47125756 47126064 -180398514 + AluY SINE Alu 1 310 -1 11605 152 49 21 chr3 47126064 47126588 -180397990 + L1MA3 LINE L1 7216 7724 0 245 306 27 9 chr3 47126757 47126868 -180397710 + L1M4 LINE L1 5609 5721 -457 8643 214 45 20 chr3 47126872 47127772 -180396806 - L1 LINE L1 -1434 4536 3660 2389 79 0 0 chr3 47127772 47128076 -180396502 - AluY SINE Alu -7 304 1 8643 214 45 20 chr3 47128076 47129487 -180395091 - L1 LINE L1 -2310 3660 2168 267 105 0 0 chr3 47129489 47129527 -180395051 - L1 LINE L1 -5851 40 3 2326 109 3 0 chr3 47129543 47129855 -180394723 - AluSq SINE Alu 0 313 1 240 352 11 0 chr3 47130697 47130788 -180393790 - HAL1 LINE L1 -1830 677 586 351 335 67 51 chr3 47130859 47131172 -180393406 - HAL1 LINE L1 -2043 464 147 2036 137 10 0 chr3 47131214 47131514 -180393064 - AluSx SINE Alu -9 303 1 2240 92 10 0 chr3 47131516 47131808 -180392770 - AluSx SINE Alu -17 295 1 352 256 39 0 chr3 47132805 47132883 -180391695 - L2 LINE L2 0 3313 3233 198 0 0 0 chr3 47133498 47133520 -180391058 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 186 133 0 0 chr3 47133835 47133865 -180390713 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 1132 299 110 36 chr3 47134853 47135551 -180389027 - L1ME3 LINE L1 -36 6126 5377 437 319 113 16 chr3 47135567 47135824 -180388754 + L1MEd LINE L1 442 723 -5396 1150 227 70 19 chr3 47135825 47136138 -180388440 - MER2 DNA MER2_type -16 329 1 242 315 19 28 chr3 47136542 47136650 -180387928 + L1MEc LINE L1 360 466 -5930 1094 264 42 47 chr3 47136893 47137656 -180386922 + L1MEc LINE L1 652 1458 -4938 3337 119 8 6 chr3 47137656 47138152 -180386426 - LOR1a LTR ERV1 0 497 1 1094 264 42 47 chr3 47138152 47138186 -180386392 + L1MEc LINE L1 1458 1491 -4905 4972 128 112 126 chr3 47138198 47139742 -180384836 + pTR5 LTR ERV1 743 2438 0 1233 267 77 39 chr3 47139756 47140265 -180384313 + L1MEc LINE L1 1517 2044 -4352 2236 247 79 56 chr3 47140371 47141328 -180383250 + L1MEc LINE L1 2547 3538 -2677 1907 152 7 20 chr3 47141328 47141631 -180382947 + AluJo SINE Alu 1 299 -13 2236 247 79 56 chr3 47141631 47141867 -180382711 + L1MEc LINE L1 3538 3767 -2448 408 218 90 126 chr3 47141903 47142315 -180382263 + MLT2C1 LTR ERVL 1 397 0 1959 219 87 42 chr3 47142603 47143200 -180381378 - MLT1E3 LTR MaLR 0 624 1 411 21 0 0 chr3 47143203 47143251 -180381327 + (TCTA)n Simple_repeat Simple_repeat 4 51 0 2023 121 11 3 chr3 47144533 47144815 -180379763 + AluSg SINE Alu 1 284 -26 406 68 106 0 chr3 47144815 47144976 -180379602 + (TA)n Simple_repeat Simple_repeat 1 178 0 41 21 0 0 chr3 47144976 47145024 -180379554 + AT_rich Low_complexity Low_complexity 1 48 0 399 69 69 35 chr3 47145024 47145197 -180379381 + (TA)n Simple_repeat Simple_repeat 2 180 0 235 130 37 0 chr3 47145880 47145934 -180378644 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 2534 117 52 47 chr3 47146051 47146477 -180378101 + MSTA LTR MaLR 1 428 0 302 284 116 5 chr3 47146522 47146737 -180377841 + Charlie2 DNA MER1_type 1855 2093 -769 2143 241 63 4 chr3 47146745 47147528 -180377050 - L1ME1 LINE L1 -223 5943 5119 * 26703 105 14 8 chr3 47147507 47152662 -180371916 - L1PA7 LINE L1 -1 6153 973 526 159 225 7 chr3 47152663 47152801 -180371777 - MLT1-int LTR MaLR -868 503 336 340 152 137 0 chr3 47153310 47153383 -180371195 - AluS SINE Alu -233 75 1 1803 194 20 28 chr3 47153433 47153488 -180371090 - LTR56 LTR ERV1 0 437 383 2156 122 17 0 chr3 47153488 47153783 -180370795 + AluSq SINE Alu 1 300 -13 1803 194 20 28 chr3 47153783 47154193 -180370385 - LTR56 LTR ERV1 -54 383 9 276 349 12 0 chr3 47154217 47154303 -180370275 + L2 LINE L2 3223 3309 -4 4391 153 49 4 chr3 47155771 47156520 -180368058 - LTR39 LTR ERV1 0 783 1 275 287 9 28 chr3 47156874 47156982 -180367596 + LTR16A1 LTR ERVL 27 132 -325 215 341 34 0 chr3 47157513 47157601 -180366977 - MIR SINE MIR 0 262 172 305 309 96 0 chr3 47158782 47158876 -180365702 - MIR SINE MIR -68 140 38 2131 99 0 11 chr3 47159436 47159720 -180364858 - AluSx SINE Alu -22 290 10 376 305 85 0 chr3 47160710 47160828 -180363750 + MIR SINE MIR 70 197 -65 180 209 44 88 chr3 47160828 47160919 -180363659 - L2 LINE L2 -110 3203 3117 271 185 0 19 chr3 47161020 47161074 -180363504 + AluJo SINE Alu 83 135 -167 1000 164 128 5 chr3 47161310 47161505 -180363073 - MER20 DNA MER1_type 0 219 1 1544 279 79 34 chr3 47161696 47162288 -180362290 + MLT2E LTR ERVL 1 619 -9 758 225 64 25 chr3 47162708 47162944 -180361634 - LTR16C LTR ERVL 0 491 247 308 292 21 0 chr3 47163035 47163131 -180361447 - LTR16C LTR ERVL -392 99 2 289 279 0 137 chr3 47164138 47164299 -180360279 - MIR3 SINE MIR -63 145 7 576 209 20 138 chr3 47164491 47164687 -180359891 + MER5B DNA MER1_type 6 178 0 696 235 17 45 chr3 47164697 47164823 -180359755 - MER5A DNA MER1_type -15 174 53 1614 154 117 26 chr3 47164823 47164993 -180359585 - THE1C LTR MaLR -1 374 221 204 40 0 0 chr3 47164993 47165018 -180359560 + (GA)n Simple_repeat Simple_repeat 2 26 0 1614 154 117 26 chr3 47165018 47165190 -180359388 - THE1C LTR MaLR -154 221 1 696 235 17 45 chr3 47165190 47165242 -180359336 - MER5A DNA MER1_type -136 53 1 198 253 13 63 chr3 47165358 47165437 -180359141 - L3 LINE CR1 -1076 501 427 25 0 0 0 chr3 47165908 47165933 -180358645 + AT_rich Low_complexity Low_complexity 1 25 0 2688 79 8 3 chr3 47166171 47166524 -180358054 - THE1A LTR MaLR 0 355 1 957 211 88 28 chr3 47166686 47166970 -180357608 - LTR16A1 LTR ERVL -10 447 147 290 121 352 0 chr3 47167059 47167150 -180357428 - LTR16A1 LTR ERVL -334 123 1 245 317 41 24 chr3 47167341 47167389 -180357189 + L2 LINE L2 3136 3182 -90 2401 82 3 0 chr3 47167389 47167683 -180356895 + AluSp SINE Alu 1 295 -18 245 317 41 24 chr3 47167683 47167757 -180356821 + L2 LINE L2 3182 3260 -12 217 0 0 57 chr3 47168144 47168179 -180356399 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 2197 113 7 0 chr3 47169433 47169724 -180354854 - AluSx SINE Alu -19 293 1 1044 203 178 10 chr3 47169759 47170154 -180354424 - L1ME2 LINE L1 -1 6163 5614 312 325 48 64 chr3 47170337 47170394 -180354184 - L2 LINE L2 -994 2320 2264 749 263 6 11 chr3 47170394 47170573 -180354005 + MER45A DNA AcHobo 1 178 0 312 325 48 64 chr3 47170573 47170764 -180353814 - L2 LINE L2 -1050 2264 2076 1240 143 49 6 chr3 47170919 47171350 -180353228 - LTR54 LTR ERV1 0 510 1 436 141 91 30 chr3 47171729 47171828 -180352750 - FLAM_A SINE Alu -6 136 32 243 324 29 19 chr3 47172390 47172495 -180352083 - L2 LINE L2 -1479 1835 1730 1178 222 113 20 chr3 47172536 47172942 -180351636 + L1ME1 LINE L1 4714 5157 -989 1420 224 13 26 chr3 47172944 47173101 -180351477 + L1ME1 LINE L1 5325 5483 -683 495 138 0 0 chr3 47173101 47173188 -180351390 + L1MB7 LINE L1 6098 6184 0 1420 224 13 26 chr3 47173188 47173418 -180351160 + L1ME1 LINE L1 5483 5707 -459 1767 227 139 13 chr3 47173420 47173944 -180350634 + MLT1E2 LTR MaLR 1 590 -36 1635 185 32 10 chr3 47174040 47174426 -180350152 + L1ME1 LINE L1 5785 6333 -1 212 325 12 12 chr3 47174588 47174668 -180349910 - L2 LINE L2 -5 3267 3188 2847 147 15 6 chr3 47174706 47175183 -180349395 + LTR39 LTR ERV1 1 481 -302 8777 166 22 48 chr3 47175186 47176881 -180347697 - MSTA-int LTR MaLR 0 1651 1 1901 109 171 60 chr3 47176881 47176927 -180347651 - MSTA LTR MaLR 0 428 389 2373 92 0 0 chr3 47176927 47177220 -180347358 + AluY SINE Alu 1 293 -18 1901 109 171 60 chr3 47177220 47177558 -180347020 - MSTA LTR MaLR -39 389 1 1480 265 36 18 chr3 47177620 47178058 -180346520 + LTR16C LTR ERVL 45 490 -1 349 301 81 27 chr3 47178109 47178295 -180346283 + L2 LINE L2 3118 3313 0 2508 44 0 7 chr3 47179208 47179502 -180345076 - AluY SINE Alu -19 292 1 1113 254 59 26 chr3 47179511 47179937 -180344641 - LTR16A1 LTR ERVL -2 455 16 371 295 45 0 chr3 47180228 47180340 -180344238 - MIR SINE MIR -1 261 145 300 316 14 58 chr3 47180345 47180484 -180344094 + L1MD2 LINE L1 3589 3721 -2425 22 35 0 0 chr3 47180522 47180551 -180344027 + AT_rich Low_complexity Low_complexity 1 29 0 246 277 157 0 chr3 47181737 47181820 -180342758 + MIR SINE MIR 59 154 -108 2876 218 109 66 chr3 47181840 47183127 -180341451 + L1MC4a LINE L1 5865 7206 -602 368 269 21 28 chr3 47183474 47183619 -180340959 + L1MC3 LINE L1 6966 7109 -676 343 276 0 0 chr3 47183624 47183700 -180340878 + MLT1F1 LTR MaLR 49 124 -443 2639 178 13 28 chr3 47183702 47184303 -180340275 + L1MD3 LINE L1 7404 7995 0 695 288 111 78 chr3 47184471 47185024 -180339554 + L1MD2 LINE L1 5256 5764 -398 200 157 20 20 chr3 47185025 47185076 -180339502 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 1365 168 29 17 chr3 47185230 47185468 -180339110 - AluJb SINE Alu -24 288 48 1726 161 33 33 chr3 47185546 47185845 -180338733 - AluJo SINE Alu -13 299 1 1159 237 62 11 chr3 47186402 47186774 -180337804 + L1MB8 LINE L1 5787 6177 -1 2941 119 107 135 chr3 47187498 47188251 -180336327 - pTR5 LTR ERV1 0 2438 1352 499 273 0 27 chr3 47188270 47188380 -180336198 - FLAM_A SINE Alu -35 107 1 788 123 53 91 chr3 47188382 47188444 -180336134 - LTR54 LTR ERV1 -330 180 117 2422 73 0 10 chr3 47188444 47188758 -180335820 - AluY SINE Alu 0 311 1 788 123 53 91 chr3 47188758 47188882 -180335696 - LTR54 LTR ERV1 -393 117 1 1749 199 62 24 chr3 47189076 47189668 -180334910 + pTR5 LTR ERV1 732 1346 -1092 1147 125 47 33 chr3 47189683 47189963 -180334615 + LTR54 LTR ERV1 170 510 0 642 192 192 0 chr3 47191108 47191259 -180333319 + MER5A DNA MER1_type 10 189 0 371 231 122 14 chr3 47191713 47191860 -180332718 - L2 LINE L2 -1 3312 3150 1601 278 96 36 chr3 47191872 47192888 -180331690 + L2 LINE L2 2225 3312 -1 591 290 23 11 chr3 47193373 47193549 -180331029 - MER5B DNA MER1_type 0 178 1 191 346 46 26 chr3 47193722 47193875 -180330703 + L3b LINE CR1 1107 1262 -321 644 262 71 11 chr3 47194056 47194239 -180330339 - MIR SINE MIR -68 194 1 246 276 11 35 chr3 47194239 47194258 -180330320 + (TA)n Simple_repeat Simple_repeat 1 19 -66 1900 194 51 70 chr3 47194258 47194784 -180329794 - MLT2B1 LTR ERVL 0 520 5 246 276 11 35 chr3 47194784 47194851 -180329727 + (TA)n Simple_repeat Simple_repeat 19 85 0 262 314 88 10 chr3 47196471 47196573 -180328005 + L2 LINE L2 3200 3309 -4 1498 227 36 23 chr3 47196818 47197085 -180327493 + L1ME3A LINE L1 5720 5997 -173 997 174 36 41 chr3 47197085 47197304 -180327274 + MER20 DNA MER1_type 1 218 -1 1498 227 36 23 chr3 47197304 47197476 -180327102 + L1ME3A LINE L1 5997 6165 -5 1688 240 88 11 chr3 47198289 47198734 -180325844 + MLT1H LTR MaLR 1 479 -70 1964 148 49 22 chr3 47199379 47199744 -180324834 + THE1C LTR MaLR 1 375 0 232 261 8 50 chr3 47200193 47200312 -180324266 + L1ME LINE L1 5769 5882 -239 23 0 0 0 chr3 47200491 47200514 -180324064 + AT_rich Low_complexity Low_complexity 1 23 0 633 256 19 12 chr3 47200698 47200858 -180323720 - MIR SINE MIR 0 262 102 393 299 42 0 chr3 47201249 47201393 -180323185 + MER103 DNA DNA 16 165 -1 199 259 0 19 chr3 47201406 47201460 -180323118 + MER5B DNA MER1_type 121 173 -5 1740 200 34 2 chr3 47202060 47202504 -180322074 - MER89 LTR ERV1 0 559 3 1630 206 12 3 chr3 47202510 47202830 -180321748 - MER89-int LTR ERV1 -5 6796 6474 268 273 52 0 chr3 47202833 47202910 -180321668 - MER89-int LTR ERV1 -1950 4851 4771 3498 247 52 72 chr3 47202920 47204277 -180320301 - MER89-int LTR ERV1 -5209 1592 263 590 141 33 25 chr3 47204274 47204395 -180320183 + MER89-int LTR ERV1 154 275 -6526 * 4338 143 60 21 chr3 47204399 47204866 -180319712 + MER54B LTR ERVL 1 511 -282 297 0 0 0 chr3 47204866 47204899 -180319679 + (GA)n Simple_repeat Simple_repeat 2 34 0 4338 143 60 21 chr3 47204899 47205194 -180319384 + MER54B LTR ERVL 511 793 0 559 178 206 6 chr3 47205210 47205390 -180319188 - MER89 LTR ERV1 -147 412 197 412 122 40 0 chr3 47205375 47205449 -180319129 - MER89 LTR ERV1 -482 77 1 * 689 238 29 62 chr3 47206021 47206265 -180318313 - L2 LINE L2 -1 3312 3077 25 0 0 0 chr3 47206988 47207013 -180317565 + AT_rich Low_complexity Low_complexity 1 25 0 511 266 18 9 chr3 47207443 47207556 -180317022 + MER91A DNA MER1_type 1 114 -82 1172 240 34 52 chr3 47207908 47208346 -180316232 + LTR16A1 LTR ERVL 23 452 -5 5695 124 1 19 chr3 47208449 47209234 -180315344 - L1PA15 LINE L1 -2 6163 5395 2292 123 0 0 chr3 47209234 47209544 -180315034 - AluSx SINE Alu -2 310 1 5695 124 1 19 chr3 47209544 47209752 -180314826 - L1PA15 LINE L1 -770 5395 5185 228 330 94 24 chr3 47210254 47210466 -180314112 - L1MC/D LINE L1 -2265 5543 5317 1162 238 102 17 chr3 47210611 47211032 -180313546 + LTR16A1 LTR ERVL 1 457 0 1124 244 0 14 chr3 47211708 47212003 -180312575 - L1MD2 LINE L1 -12 6347 6057 3348 91 75 45 chr3 47212003 47212565 -180312013 + LTR12 LTR ERV1 1 579 -135 2957 211 49 8 chr3 47212565 47213295 -180311283 - L1MD2 LINE L1 -297 6062 5303 3995 111 41 2 chr3 47213444 47214058 -180310520 + L1PA13 LINE L1 5521 6158 -5 605 245 0 0 chr3 47214058 47214217 -180310361 - L1MD2 LINE L1 -866 5280 5122 224 366 59 54 chr3 47214226 47214412 -180310166 - L2 LINE L2 -5 3267 3081 363 288 49 35 chr3 47214598 47214741 -180309837 - MIR SINE MIR -66 142 38 504 228 27 27 chr3 47215992 47216141 -180308437 + MLT1K LTR MaLR 430 578 -10 464 193 9 0 chr3 47216196 47216305 -180308273 + GA-rich Low_complexity Low_complexity 1 110 0 1174 238 67 62 chr3 47216647 47216855 -180307723 + L1MC4a LINE L1 5295 4996 -1155 902 249 158 30 chr3 47216855 47217317 -180307261 - LTR33A LTR ERVL -1 522 2 1174 238 67 62 chr3 47217317 47217730 -180306848 + L1MC4a LINE L1 4995 5405 -746 21 0 0 0 chr3 47217919 47217940 -180306638 + AT_rich Low_complexity Low_complexity 1 21 0 204 40 0 0 chr3 47218069 47218094 -180306484 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 330 285 119 88 chr3 47218754 47219388 -180305190 + L1M2 LINE L1 445 1132 -5717 402 246 130 25 chr3 47221604 47221807 -180302771 - L1ME3A LINE L1 -2 6168 5944 229 295 74 30 chr3 47223535 47223901 -180300677 - L1ME3A LINE L1 -360 5804 5413 335 311 112 14 chr3 47224055 47224476 -180300102 - L1ME3A LINE L1 -1197 4949 4488 1683 121 40 83 chr3 47224554 47224952 -180299626 - L1MB8 LINE L1 -16 6162 5782 221 256 0 0 chr3 47224952 47224995 -180299583 + (TATG)n Simple_repeat Simple_repeat 2 44 0 322 289 8 39 chr3 47225030 47225158 -180299420 - L1ME3A LINE L1 -1746 4400 4277 239 331 44 0 chr3 47225238 47225398 -180299180 - L1ME3A LINE L1 -1982 4164 3998 2522 62 0 3 chr3 47225621 47225927 -180298651 - AluY SINE Alu -1 310 6 225 228 0 35 chr3 47226048 47226105 -180298473 + MIR SINE MIR 178 232 -30 264 256 67 11 chr3 47226297 47226387 -180298191 - L1ME4a LINE L1 -53 6068 5974 969 185 63 42 chr3 47227010 47227297 -180297281 - MER33 DNA MER1_type -1 323 31 24 0 0 0 chr3 47227509 47227533 -180297045 + AT_rich Low_complexity Low_complexity 1 24 0 346 228 25 0 chr3 47227755 47227857 -180296721 - L1ME4a LINE L1 -518 5603 5498 327 297 41 33 chr3 47228101 47228402 -180296176 - L1MC/D LINE L1 -371 5799 5528 2172 114 7 3 chr3 47228621 47228911 -180295667 + AluSq SINE Alu 5 295 -18 997 244 177 28 chr3 47230908 47231698 -180292880 - L1MC/D LINE L1 -2884 3262 2355 13006 203 31 43 chr3 47231726 47231902 -180292676 - L1MA5A LINE L1 -5 6934 6757 1455 71 71 49 chr3 47231902 47232127 -180292451 - MER30 DNA MER1_type 0 230 1 13006 203 31 43 chr3 47232127 47232560 -180292018 - L1MA5A LINE L1 -182 6757 6320 2151 118 20 0 chr3 47232560 47232864 -180291714 - AluSx SINE Alu -2 310 1 13006 203 31 43 chr3 47232864 47234259 -180290319 - L1MA5A LINE L1 -619 6320 4909 1740 188 3 16 chr3 47234259 47234568 -180290010 - AluJo SINE Alu -7 305 1 13006 203 31 43 chr3 47234568 47236652 -180287926 - L1MA5A LINE L1 -2030 4909 2905 1526 216 10 16 chr3 47236652 47236962 -180287616 - AluJo SINE Alu -4 308 1 13006 203 31 43 chr3 47236962 47237945 -180286633 - L1MA5A LINE L1 -4034 2905 1911 319 145 40 0 chr3 47237946 47238022 -180286556 - L1MA5A LINE L1 -5022 1767 1689 4697 126 7 1 chr3 47238034 47238795 -180285783 - L1PB1 LINE L1 -1 6150 5386 2139 210 15 0 chr3 47238778 47239235 -180285343 - L1MA5A LINE L1 -5085 1704 1241 * 817 192 23 12 chr3 47239235 47239407 -180285171 + Tigger1 DNA MER2_type 2243 2416 -2 3807 285 116 17 chr3 47239412 47240992 -180283586 + L2 LINE L2 682 2417 -897 689 238 26 0 chr3 47241064 47241291 -180283287 - Charlie5 DNA MER1_type -146 2466 2234 580 190 26 0 chr3 47241292 47241408 -180283170 - Charlie5 DNA MER1_type -2491 121 3 625 293 111 14 chr3 47242376 47242799 -180281779 + L1ME4a LINE L1 5576 6039 -82 218 322 17 0 chr3 47243136 47243195 -180281383 + L2 LINE L2 3205 3264 -8 2248 106 0 26 chr3 47243288 47243590 -180280988 + AluSq SINE Alu 1 294 -19 228 188 21 0 chr3 47243850 47243898 -180280680 + MER91 DNA MER1_type 79 127 -63 26 0 0 0 chr3 47244322 47244348 -180280230 + AT_rich Low_complexity Low_complexity 1 26 0 31 68 0 0 chr3 47245019 47245078 -180279500 + AT_rich Low_complexity Low_complexity 1 59 0 25183 104 17 52 chr3 47245148 47246125 -180278453 - L1PA7 LINE L1 -5 6149 5139 2862 183 16 21 chr3 47246125 47246704 -180277874 - LTR22 LTR ERVK -3 577 2 25183 104 17 52 chr3 47246704 47248808 -180275770 - L1PA7 LINE L1 -1015 5139 2963 2190 114 3 0 chr3 47248808 47249105 -180275473 - AluSq SINE Alu -15 298 1 25183 104 17 52 chr3 47249105 47252471 -180272107 - L1PA7 LINE L1 -3191 2963 1 1903 310 101 42 chr3 47253109 47254628 -180269950 - MERVL LTR ERVL -933 4552 2944 180 0 0 0 chr3 47255396 47255416 -180269162 + (A)n Simple_repeat Simple_repeat 1 20 0 900 319 174 4 chr3 47255745 47256250 -180268328 + L2 LINE L2 37 627 -2687 719 264 63 39 chr3 47256253 47256615 -180267963 - MLT2C2 LTR ERVL -7 457 91 849 157 73 6 chr3 47256622 47256645 -180267933 - Ricksha DNA DNA -1672 374 340 2334 169 69 6 chr3 47256645 47257124 -180267454 - ERVL-C2 LTR ERVL -1 5763 5255 487 257 7 29 chr3 47257138 47257274 -180267304 + L2 LINE L2 659 791 -2523 317 300 58 8 chr3 47257722 47257842 -180266736 - L1ME4a LINE L1 -222 5899 5774 435 239 53 0 chr3 47260838 47260951 -180263627 - MER20 DNA MER1_type -100 119 1 1963 115 16 3 chr3 47261979 47262283 -180262295 - L1PB1 LINE L1 -20 6847 6540 390 85 73 0 chr3 47262283 47262365 -180262213 + CT-rich Low_complexity Low_complexity 3 90 0 2028 123 11 3 chr3 47262365 47262650 -180261928 - AluSx SINE Alu -25 287 1 3755 148 11 9 chr3 47262650 47263762 -180260816 - L1PB1 LINE L1 -322 6545 5433 * 10798 179 42 7 chr3 47263761 47265928 -180258650 - L1PB1 LINE L1 -4621 2242 1 563 341 23 23 chr3 47266157 47266506 -180258072 + L1M2 LINE L1 2149 2497 -4999 1385 194 41 41 chr3 47266506 47266800 -180257778 + AluJb SINE Alu 9 302 -10 252 86 0 0 chr3 47266811 47266846 -180257732 + (GGAA)n Simple_repeat Simple_repeat 4 38 0 1085 174 120 16 chr3 47266846 47267163 -180257415 + L1M2 LINE L1 2475 2824 -4672 * 7853 226 37 21 chr3 47267156 47269725 -180254853 + L1M2 LINE L1 3086 5704 -1861 5598 220 39 15 chr3 47269725 47272040 -180252538 + L1PA15 LINE L1 175 2774 -4023 12613 194 9 15 chr3 47272045 47275917 -180248661 + L1PA15 LINE L1 2969 6810 -6 461 205 79 0 chr3 47275917 47276044 -180248534 + L1M2 LINE L1 5693 5829 -1736 1000 74 0 0 chr3 47276046 47276168 -180248410 - AluSp/q SINE Alu -21 292 171 3982 179 49 9 chr3 47276169 47277502 -180247076 + L1M2 LINE L1 5826 7197 -534 209 256 0 0 chr3 47278211 47278250 -180246328 - L2 LINE L2 -17 3255 3217 1030 184 10 5 chr3 47278281 47278482 -180246096 + MER74A LTR ERVL 1 202 -356 1763 234 31 22 chr3 47278490 47279223 -180245355 - L1M4c LINE L1 -4749 1897 1168 225 336 23 31 chr3 47279244 47279372 -180245206 + MIR SINE MIR 22 148 -114 310 299 90 12 chr3 47281150 47281317 -180243261 + MIR SINE MIR 6 185 -77 23 0 0 0 chr3 47281487 47281510 -180243068 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 47281587 47281609 -180242969 + AT_rich Low_complexity Low_complexity 1 22 0 42029 41 0 1 chr3 47282027 47288176 -180236402 - L1PA3 LINE L1 -5 6150 8 316 324 38 0 chr3 47288223 47288328 -180236250 + L1MC4 LINE L1 6613 6721 -1321 2244 84 0 37 chr3 47288459 47288756 -180235822 + AluSc SINE Alu 1 286 -23 219 125 0 0 chr3 47288765 47288805 -180235773 + (TA)n Simple_repeat Simple_repeat 1 40 0 404 227 43 34 chr3 47288995 47289202 -180235376 - L1ME LINE L1 -5333 737 529 396 304 15 61 chr3 47289373 47289636 -180234942 - L1ME LINE L1 -5539 531 281 446 269 46 28 chr3 47289647 47289723 -180234855 - L1ME LINE L1 -5839 231 158 185 83 28 0 chr3 47289723 47289759 -180234819 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1143 50 0 0 chr3 47289759 47289900 -180234678 - L1PA4 LINE L1 -18 6137 5997 446 269 46 28 chr3 47289900 47290038 -180234540 - L1ME LINE L1 -5911 159 12 518 293 75 19 chr3 47290230 47290442 -180234136 + MIR SINE MIR 31 254 -8 464 206 79 42 chr3 47290460 47290649 -180233929 - HAL1 LINE L1 -1078 1429 1234 1169 276 91 48 chr3 47290656 47291360 -180233218 - HAL1 LINE L1 -1320 1187 454 574 330 32 70 chr3 47291370 47291715 -180232863 - HAL1 LINE L1 -2174 333 2 32 0 0 0 chr3 47292141 47292173 -180232405 + AT_rich Low_complexity Low_complexity 1 32 0 570 257 198 0 chr3 47292263 47292450 -180232128 + MIR SINE MIR 13 236 -26 314 241 62 136 chr3 47293112 47293369 -180231209 + L1M4b LINE L1 1421 1658 -5201 305 286 91 43 chr3 47293548 47293922 -180230656 + L1M4b LINE L1 1983 2374 -4764 348 214 0 0 chr3 47293943 47294013 -180230565 + L1MDb LINE L1 20 89 -6320 1052 220 24 4 chr3 47294021 47294276 -180230302 + MLT2D LTR ERVL 1 260 -154 355 228 33 87 chr3 47294299 47294483 -180230095 - L1MC4a LINE L1 -1856 5952 5779 182 167 0 24 chr3 47294592 47294634 -180229944 + CT-rich Low_complexity Low_complexity 4 44 0 636 236 89 50 chr3 47294642 47294922 -180229656 - L1MC4a LINE L1 -2221 5587 5297 5444 61 0 0 chr3 47294996 47295737 -180228841 - L1PA3 LINE L1 -4311 1835 1095 11174 26 0 0 chr3 47295737 47297141 -180227437 + L1PA3 LINE L1 1852 3255 -2891 10929 69 1 0 chr3 47297137 47299375 -180225203 + L1PA3 LINE L1 3915 6155 0 * 309 331 55 17 chr3 47299389 47299570 -180225008 - L1MC4a LINE L1 -944 5202 5015 21 36 0 0 chr3 47299657 47299685 -180224893 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 47300318 47300343 -180224235 + AT_rich Low_complexity Low_complexity 1 25 0 380 336 49 7 chr3 47301023 47301421 -180223157 - L1PA13 LINE L1 -333 5830 5462 32 57 0 0 chr3 47301746 47301799 -180222779 + AT_rich Low_complexity Low_complexity 1 53 0 243 209 191 9 chr3 47303215 47303325 -180221253 - L1ME4a LINE L1 0 6121 5992 348 83 0 0 chr3 47303357 47303405 -180221173 + (CA)n Simple_repeat Simple_repeat 1 48 0 30 45 0 0 chr3 47303432 47303476 -180221102 + AT_rich Low_complexity Low_complexity 1 44 0 226 323 39 13 chr3 47303510 47303665 -180220913 - L1ME4a LINE L1 -305 5816 5658 1327 243 134 17 chr3 47303836 47304297 -180220281 - L1ME3A LINE L1 -2 6168 5654 684 259 92 19 chr3 47304332 47304649 -180219929 - L1ME4a LINE L1 -286 5835 5496 2354 96 0 0 chr3 47304866 47305169 -180219409 - AluSx SINE Alu -9 303 1 366 317 39 29 chr3 47305299 47305507 -180219071 + L1M4 LINE L1 4528 4737 -1409 296 48 24 0 chr3 47305584 47305626 -180218952 + (TG)n Simple_repeat Simple_repeat 1 43 0 210 255 147 109 chr3 47307182 47307366 -180217212 + MIR3 SINE MIR 5 195 -13 25 0 0 0 chr3 47307946 47307971 -180216607 + AT_rich Low_complexity Low_complexity 1 25 0 205 224 148 118 chr3 47308261 47308498 -180216080 + MIR SINE MIR 18 261 -1 22 35 0 0 chr3 47308574 47308603 -180215975 + AT_rich Low_complexity Low_complexity 1 29 0 848 263 107 41 chr3 47308928 47309089 -180215489 - L1ME3 LINE L1 -276 5886 5737 198 0 0 0 chr3 47309089 47309111 -180215467 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 848 263 107 41 chr3 47309111 47309150 -180215428 - L1ME3 LINE L1 -425 5737 5702 339 160 67 0 chr3 47309150 47309225 -180215353 - MER116 DNA Mariner 0 80 1 848 263 107 41 chr3 47309225 47309509 -180215069 - L1ME3 LINE L1 -460 5702 5369 2153 105 3 3 chr3 47309509 47309803 -180214775 - AluSx SINE Alu -18 294 1 54 29 0 0 chr3 47310014 47310082 -180214496 + AT_rich Low_complexity Low_complexity 1 68 0 270 200 0 92 chr3 47311074 47311139 -180213439 - MIR3 SINE MIR -42 166 108 217 245 20 0 chr3 47311390 47311439 -180213139 + L2 LINE L2 3226 3275 -38 698 278 38 58 chr3 47311720 47312033 -180212545 - L2 LINE L2 -816 2498 2192 319 257 50 20 chr3 47312033 47312134 -180212444 - L2 LINE L2 -2044 1270 1167 223 336 131 8 chr3 47312132 47312254 -180212324 + L2 LINE L2 3136 3272 0 * 328 328 104 11 chr3 47313302 47313485 -180211093 - MIR SINE MIR -6 256 57 278 205 173 16 chr3 47313562 47313689 -180210889 - L1MC5 LINE L1 -306 7655 7509 21 0 0 0 chr3 47313877 47313898 -180210680 + AT_rich Low_complexity Low_complexity 1 21 0 1755 138 45 4 chr3 47313912 47314216 -180210362 - AluSx SINE Alu 0 317 3 255 291 45 0 chr3 47314974 47315084 -180209494 - HAL1 LINE L1 -148 2359 2245 310 315 61 61 chr3 47315455 47315636 -180208942 - HAL1 LINE L1 -2326 181 1 21 57 0 0 chr3 47316938 47316973 -180207605 + AT_rich Low_complexity Low_complexity 1 35 0 308 282 177 38 chr3 47316992 47317372 -180207206 + MLT1J2 LTR MaLR 1 407 -2 220 306 19 46 chr3 47317430 47317538 -180207040 - MIR3 SINE MIR -97 111 7 21 57 0 0 chr3 47318336 47318371 -180206207 + AT_rich Low_complexity Low_complexity 1 35 0 260 234 89 73 chr3 47319522 47319562 -180205016 - MIR SINE MIR -64 198 160 2237 117 3 0 chr3 47319562 47319871 -180204707 - AluSg SINE Alu 0 310 1 260 234 89 73 chr3 47319871 47319954 -180204624 - MIR SINE MIR -102 160 73 31 44 0 0 chr3 47421159 47421204 -180103374 + AT_rich Low_complexity Low_complexity 1 45 0 300 91 0 0 chr3 47421624 47421668 -180102910 + (ATG)n Simple_repeat Simple_repeat 3 46 0 441 335 37 5 chr3 47421682 47421897 -180102681 - MIR SINE MIR -32 230 9 513 244 63 0 chr3 47422304 47422431 -180102147 + MER103 DNA DNA 31 165 -1 377 191 143 9 chr3 47422982 47423087 -180101491 + LTR33 LTR ERVL 349 467 -54 2221 73 3 0 chr3 47423325 47423613 -180100965 - L1P LINE L1 -5820 326 38 8119 26 1 0 chr3 47423613 47425018 -180099560 + L1PA4 LINE L1 4746 6151 -4 332 216 39 69 chr3 47425221 47425323 -180099255 - MER5A DNA MER1_type -77 112 14 2448 60 3 7 chr3 47426052 47426354 -180098224 - AluY SINE Alu -10 301 1 324 264 0 0 chr3 47427336 47427423 -180097155 - MIR SINE MIR 0 262 176 637 258 0 51 chr3 47427473 47427651 -180096927 + MIR SINE MIR 60 228 -34 252 273 0 0 chr3 47428513 47428601 -180095977 + (TG)n Simple_repeat Simple_repeat 2 89 0 580 271 58 10 chr3 47428927 47429134 -180095444 + L2 LINE L2 2912 3128 -185 316 250 18 9 chr3 47429776 47429888 -180094690 + G-rich Low_complexity Low_complexity 2 114 0 205 346 9 19 chr3 47429891 47429998 -180094580 + GA-rich Low_complexity Low_complexity 4 109 0 222 136 0 23 chr3 47430401 47430445 -180094133 + (TTTTG)n Simple_repeat Simple_repeat 5 47 0 22 0 0 0 chr3 47430576 47430598 -180093980 + AT_rich Low_complexity Low_complexity 1 22 0 379 262 87 94 chr3 47432360 47432806 -180091772 - HAL1 LINE L1 -2 2505 2063 1248 161 75 4 chr3 47432831 47433086 -180091492 - MSTA LTR MaLR 0 428 156 28 0 0 0 chr3 47433188 47433216 -180091362 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr3 47433533 47433562 -180091016 + AT_rich Low_complexity Low_complexity 1 29 0 712 231 79 30 chr3 47433677 47433880 -180090698 + MER96B DNA MER1_type? 193 405 -12 277 274 28 38 chr3 47433953 47434059 -180090519 + CT-rich Low_complexity Low_complexity 1 105 0 298 336 0 27 chr3 47434088 47434238 -180090340 + CT-rich Low_complexity Low_complexity 1 145 0 9300 57 4 9 chr3 47434368 47435590 -180088988 + L1P LINE L1 3531 4746 -1400 2666 26 0 10 chr3 47436228 47436532 -180088046 - AluY SINE Alu -10 301 1 357 285 45 39 chr3 47436590 47436769 -180087809 + L2 LINE L2 2271 2450 -864 183 388 71 0 chr3 47436773 47436858 -180087720 + L2 LINE L2 3143 3233 -39 240 248 172 21 chr3 47437211 47437356 -180087222 - MIR SINE MIR -25 237 71 318 247 22 0 chr3 47437509 47437598 -180086980 - L1ME4a LINE L1 -74 6047 5957 225 222 89 33 chr3 47438681 47438771 -180085807 - MIR3 SINE MIR -113 95 1 931 158 48 0 chr3 47439443 47439589 -180084989 + AluSq SINE Alu 137 289 -24 31006 51 1 1 chr3 47439748 47443545 -180081033 + L1P LINE L1 1 3797 -2349 368 340 0 0 chr3 47443545 47443648 -180080930 + L2 LINE L2 3205 3307 -6 205 313 84 12 chr3 47444176 47444259 -180080319 - MIR SINE MIR -74 188 100 3580 108 7 32 chr3 47444521 47445077 -180079501 - L1MA5A LINE L1 -5 6292 5751 1813 234 30 25 chr3 47445103 47445436 -180079142 - L1ME1 LINE L1 -6 6160 5823 2025 155 0 0 chr3 47445436 47445732 -180078846 - AluJo SINE Alu -16 296 1 1813 234 30 25 chr3 47445732 47445873 -180078705 - L1ME1 LINE L1 -343 5823 5684 669 151 0 0 chr3 47445885 47445978 -180078600 - LTR47A LTR ERVL -86 366 274 3011 129 23 14 chr3 47445978 47446615 -180077963 - L1ME1 LINE L1 -475 5890 5354 2859 116 12 21 chr3 47446615 47447045 -180077533 - L1MA2 LINE L1 0 6304 5879 408 19 0 56 chr3 47447045 47447099 -180077479 + L1MA1 LINE L1 5791 5841 -461 * 4328 182 15 0 chr3 47447089 47447893 -180076685 - L1 LINE L1 -774 5372 4557 2264 95 7 3 chr3 47447900 47448205 -180076373 - AluSq SINE Alu -7 306 1 1554 197 25 0 chr3 47448327 47448611 -180075967 - AluJb SINE Alu -21 291 1 400 221 84 0 chr3 47448973 47449068 -180075510 + L2 LINE L2 3211 3313 0 836 76 68 8 chr3 47449509 47449641 -180074937 - L1MA7 LINE L1 0 6291 6152 657 108 50 12 chr3 47449970 47450559 -180074019 + (TA)n Simple_repeat Simple_repeat 1 611 0 772 121 0 0 chr3 47450559 47450658 -180073920 - AluSx SINE Alu -18 292 194 1126 116 0 0 chr3 47450659 47450805 -180073773 - AluSx SINE Alu -166 146 1 436 260 68 14 chr3 47452964 47453110 -180071468 + L2 LINE L2 3112 3265 -7 2401 155 73 14 chr3 47453821 47454725 -180069853 - Looper DNA T2_type -507 1051 6 200 301 62 44 chr3 47454968 47455081 -180069497 + L2 LINE L2 2950 3064 -208 1395 148 15 4 chr3 47455225 47455328 -180069250 + L1MA4 LINE L1 6023 6123 -177 1965 180 0 3 chr3 47455328 47455633 -180068945 + 7SLRNA srpRNA srpRNA 1 304 -16 1395 148 15 4 chr3 47455633 47455793 -180068785 + L1MA4 LINE L1 6123 6289 -11 207 216 114 11 chr3 47455850 47455938 -180068640 + L2 LINE L2 3171 3267 -5 324 294 94 6 chr3 47457285 47457465 -180067113 - MIR SINE MIR -7 255 60 192 152 0 0 chr3 47458407 47458440 -180066138 + (TA)n Simple_repeat Simple_repeat 1 33 0 244 256 47 0 chr3 47458441 47458527 -180066051 - L1MC4 LINE L1 -1339 6703 6614 241 238 0 0 chr3 47458530 47458593 -180065985 - L1MC4 LINE L1 -1340 6702 6640 1605 167 83 7 chr3 47458812 47459100 -180065478 + AluJb SINE Alu 3 312 0 928 156 45 45 chr3 47459100 47459279 -180065299 + AluJb SINE Alu 134 312 0 332 182 227 0 chr3 47459576 47459686 -180064892 + MIR SINE MIR 127 261 -1 273 29 0 0 chr3 47459933 47459967 -180064611 + (CA)n Simple_repeat Simple_repeat 2 35 0 1259 229 55 70 chr3 47460067 47460465 -180064113 + LTR16C LTR ERVL 100 491 0 416 288 66 42 chr3 47462764 47463097 -180061481 + L1ME LINE L1 3671 4011 -2135 360 326 138 41 chr3 47463373 47463815 -180060763 + L1ME1 LINE L1 3425 3909 -2237 253 256 120 17 chr3 47464113 47464230 -180060348 + L1ME1 LINE L1 4073 4201 -1945 430 189 133 35 chr3 47464417 47464560 -180060018 + L1ME1 LINE L1 5597 5753 -413 1495 197 57 0 chr3 47464571 47464886 -180059692 + L1ME1 LINE L1 5820 6152 -14 321 252 13 0 chr3 47464886 47465000 -180059578 - L1MC4 LINE L1 -1341 6981 2004 414 310 25 10 chr3 47465073 47465270 -180059308 + L1ME LINE L1 4490 4689 -1457 390 320 81 32 chr3 47465273 47465582 -180058996 + L1ME LINE L1 4753 5076 -1070 21 57 0 0 chr3 47465626 47465661 -180058917 + AT_rich Low_complexity Low_complexity 1 35 0 7814 22 0 0 chr3 47465662 47466818 -180057760 - L1PA4 LINE L1 -4 6151 4995 2552 103 111 8 chr3 47466934 47467322 -180057256 - MSTA LTR MaLR 0 428 1 207 0 0 0 chr3 47467366 47467389 -180057189 + (A)n Simple_repeat Simple_repeat 1 23 0 233 133 44 0 chr3 47467389 47467434 -180057144 + L1ME LINE L1 5353 5399 -747 251 276 26 0 chr3 47467510 47467586 -180056992 - L2 LINE L2 -5 3308 3231 537 272 110 51 chr3 47467607 47467684 -180056894 + L1ME LINE L1 5406 5477 -644 1611 193 3 3 chr3 47467684 47467969 -180056609 + AluJo SINE Alu 13 297 -15 537 272 110 51 chr3 47467969 47468226 -180056352 + L1ME LINE L1 5477 5760 -361 365 235 60 0 chr3 47468389 47468709 -180055869 + (TA)n Simple_repeat Simple_repeat 1 339 0 417 214 46 12 chr3 47468729 47468902 -180055676 + (TA)n Simple_repeat Simple_repeat 2 180 0 323 262 60 0 chr3 47468928 47469096 -180055482 + (TA)n Simple_repeat Simple_repeat 1 178 0 2208 103 10 0 chr3 47469126 47469417 -180055161 - AluSx SINE Alu -18 294 1 308 189 68 0 chr3 47469417 47469491 -180055087 + L1MDa LINE L1 1971 2049 -4491 220 316 45 8 chr3 47470732 47470865 -180053713 + MIR SINE MIR 125 262 0 854 263 24 0 chr3 47471063 47471268 -180053310 + MER63A DNA MER1_type 1 210 0 420 300 46 0 chr3 47471951 47472081 -180052497 - L2 LINE L2 0 3272 3137 295 281 173 17 chr3 47472221 47472452 -180052126 - L2 LINE L2 -493 2821 2555 189 329 28 42 chr3 47472762 47472905 -180051673 - MIR SINE MIR -16 246 106 327 343 67 0 chr3 47476107 47476285 -180048293 - MIR SINE MIR -45 217 28 849 123 32 39 chr3 47476514 47476668 -180047910 - LTR32 LTR ERVL 0 471 319 1670 180 23 58 chr3 47476726 47477071 -180047507 - LTR32 LTR ERVL -119 352 20 277 148 0 66 chr3 47477481 47477542 -180047036 + L2 LINE L2 2920 2976 -337 277 314 35 0 chr3 47477747 47477833 -180046745 - MIR SINE MIR -71 191 103 877 300 142 30 chr3 47478154 47478661 -180045917 - MLT1K LTR MaLR 0 588 25 242 228 35 0 chr3 47479211 47479268 -180045310 + CT-rich Low_complexity Low_complexity 3 61 0 291 259 19 28 chr3 47479310 47479418 -180045160 + CT-rich Low_complexity Low_complexity 5 111 0 208 345 44 9 chr3 47479724 47479837 -180044741 - MIR SINE MIR -72 136 20 704 246 121 0 chr3 47480633 47480865 -180043713 - MIR SINE MIR -1 261 2 351 0 0 0 chr3 47482230 47482269 -180042309 + (TG)n Simple_repeat Simple_repeat 2 40 0 300 91 0 0 chr3 47482386 47482430 -180042148 + (TG)n Simple_repeat Simple_repeat 2 45 0 274 267 0 13 chr3 47482925 47483000 -180041578 - MIR SINE MIR -119 143 70 759 246 105 20 chr3 47484407 47484760 -180039818 - HAL1 LINE L1 0 2507 2125 1022 243 130 13 chr3 47484766 47485243 -180039335 - HAL1 LINE L1 -982 1525 993 1514 278 155 9 chr3 47485260 47485957 -180038621 - HAL1 LINE L1 -1571 936 138 432 219 51 112 chr3 47486269 47486484 -180038094 + MER112 DNA MER1_type 1 202 -58 2447 90 0 0 chr3 47486967 47487267 -180037311 + AluSp SINE Alu 3 302 -11 348 262 87 94 chr3 47488340 47488786 -180035792 - HAL1 LINE L1 -2 2505 2063 1738 121 49 0 chr3 47488811 47489076 -180035502 - MSTA LTR MaLR 0 428 151 2223 136 8 17 chr3 47489083 47489437 -180035141 - THE1C LTR MaLR 0 375 25 689 99 37 148 chr3 47489576 47489738 -180034840 - MER4C LTR ERV1 -321 144 1 23 33 0 0 chr3 47490260 47490290 -180034288 + AT_rich Low_complexity Low_complexity 1 30 0 460 329 120 5 chr3 47490303 47490519 -180034059 - MIR SINE MIR 0 262 22 2232 111 7 0 chr3 47490519 47490807 -180033771 - AluSx SINE Alu -17 295 6 948 124 7 15 chr3 47492499 47492664 -180031914 - MSTA LTR MaLR -275 157 1 509 312 110 44 chr3 47492995 47493585 -180030993 - L1M4 LINE L1 -3388 2758 2130 335 286 61 0 chr3 47493702 47493800 -180030778 - L2 LINE L2 0 3313 3210 562 195 53 0 chr3 47493839 47493952 -180030626 + MER45A DNA AcHobo 60 178 0 312 296 61 0 chr3 47494404 47494502 -180030076 - L2 LINE L2 0 3313 3210 562 195 53 0 chr3 47494541 47494654 -180029924 + MER45A DNA AcHobo 60 178 0 226 226 186 0 chr3 47494763 47494865 -180029713 - L2 LINE L2 -223 3049 2929 333 0 0 0 chr3 47495425 47495462 -180029116 + (GA)n Simple_repeat Simple_repeat 1 37 0 2230 166 173 0 chr3 47496057 47496392 -180028186 + MER74A LTR ERVL 22 458 -100 329 67 0 0 chr3 47496392 47496437 -180028141 - L1PA5 LINE L1 0 6154 6110 2230 166 173 0 chr3 47496437 47496559 -180028019 + MER74A LTR ERVL 458 558 0 416 184 0 46 chr3 47496771 47496858 -180027720 + FLAM_A SINE Alu 1 83 -59 414 0 0 0 chr3 47498153 47498199 -180026379 + (TG)n Simple_repeat Simple_repeat 2 47 0 193 304 0 0 chr3 47499224 47499280 -180025298 + L3 LINE CR1 1521 1576 -1 290 322 0 11 chr3 47499515 47499602 -180024976 + G-rich Low_complexity Low_complexity 6 91 0 2090 125 3 3 chr3 47500419 47500716 -180023862 - AluSq SINE Alu -16 297 1 341 269 56 68 chr3 47500791 47500953 -180023625 + L1MC4a LINE L1 4893 5052 -1094 2458 88 0 0 chr3 47500953 47501260 -180023318 - AluY SINE Alu -4 307 1 341 269 56 68 chr3 47501260 47501346 -180023232 + L1MC4a LINE L1 5052 5138 -1008 2221 158 18 0 chr3 47501390 47501731 -180022847 + MER7A DNA MER2_type 2 346 0 653 284 132 26 chr3 47501917 47502343 -180022235 + L1MC4a LINE L1 5381 5851 -1957 22 70 0 0 chr3 47502488 47502531 -180022047 + AT_rich Low_complexity Low_complexity 1 43 0 1961 134 76 25 chr3 47502536 47502893 -180021685 - THE1C LTR MaLR 0 375 1 278 308 130 41 chr3 47502908 47503077 -180021501 - MIR3 SINE MIR -6 202 19 1563 268 53 64 chr3 47505153 47505831 -180018747 + L1MC4a LINE L1 5145 5829 -317 315 0 0 0 chr3 47505831 47505866 -180018712 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6377 28 34 0 chr3 47505874 47506590 -180017988 - L1PA4 LINE L1 0 6155 5416 1563 268 53 64 chr3 47506590 47506743 -180017835 + L1PA4 LINE L1 5249 5402 -744 2909 40 6 0 chr3 47506867 47507222 -180017356 + L1PA3 LINE L1 5820 6176 0 194 184 0 0 chr3 47507288 47507326 -180017252 + MIR SINE MIR 151 188 -74 189 413 58 0 chr3 47507823 47507944 -180016634 - MIR3 SINE MIR -66 142 15 833 219 74 28 chr3 47508943 47509158 -180015420 - MER96B DNA MER1_type? 0 417 193 22 35 0 0 chr3 47509273 47509302 -180015276 + AT_rich Low_complexity Low_complexity 1 29 0 44 20 0 0 chr3 47509647 47509698 -180014880 + AT_rich Low_complexity Low_complexity 1 51 0 308 176 40 0 chr3 47509971 47510045 -180014533 - L1MA4A LINE L1 -7 6296 6220 1066 101 0 0 chr3 47510142 47510280 -180014298 - L1PA15 LINE L1 -4 6161 6024 1074 230 47 81 chr3 47510667 47510812 -180013766 - MLT1H1 LTR MaLR -234 356 208 2496 157 78 29 chr3 47510812 47511258 -180013320 - MER70A LTR ERVL -2 470 3 1074 230 47 81 chr3 47511258 47511477 -180013101 - MLT1H1 LTR MaLR -382 208 1 552 266 91 7 chr3 47512219 47512373 -180012205 + MIR SINE MIR 63 229 -33 290 175 70 0 chr3 47512409 47512466 -180012112 + MIR SINE MIR 28 88 -174 3262 62 33 7 chr3 47512467 47512889 -180011689 - MLT2A1 LTR ERVL -10 434 2 184 228 53 0 chr3 47512890 47512947 -180011631 + MIR SINE MIR 77 136 -126 984 199 22 0 chr3 47513421 47513602 -180010976 + MER5A DNA MER1_type 4 188 -1 276 316 84 7 chr3 47513765 47513920 -180010658 - MIR SINE MIR -3 259 93 455 289 53 26 chr3 47514459 47514649 -180009929 - MIR SINE MIR -3 259 65 771 225 219 21 chr3 47514977 47515311 -180009267 + LTR33A LTR ERVL 104 503 -20 924 174 0 7 chr3 47515364 47515519 -180009059 - LTR32 LTR ERVL 0 471 318 1837 189 27 12 chr3 47515653 47515987 -180008591 - LTR32 LTR ERVL -119 352 14 1588 133 0 17 chr3 47516425 47516665 -180007913 + AluSq SINE Alu 1 236 -77 406 296 71 19 chr3 47516827 47517094 -180007484 + HAL1 LINE L1 1355 1635 -872 285 284 0 0 chr3 47517244 47517311 -180007267 + L1ME LINE L1 2 68 -6002 2954 155 25 33 chr3 47517537 47518027 -180006551 - MER66B LTR ERV1 0 486 1 374 264 113 81 chr3 47518653 47519059 -180005519 + L1M4 LINE L1 4507 4925 -1221 642 281 182 12 chr3 47519269 47519808 -180004770 - L2 LINE L2 -3 3310 2677 23 33 0 0 chr3 47520195 47520225 -180004353 + AT_rich Low_complexity Low_complexity 1 30 0 284 248 106 18 chr3 47521155 47521268 -180003310 + MIR SINE MIR 108 230 -32 180 285 109 51 chr3 47521977 47522114 -180002464 + L2 LINE L2 2569 2713 -601 506 289 119 9 chr3 47522123 47522341 -180002237 + MIR SINE MIR 8 249 -13 227 261 179 45 chr3 47522607 47522741 -180001837 + L2 LINE L2 3094 3245 -27 195 42 0 0 chr3 47522933 47522957 -180001621 + (TC)n Simple_repeat Simple_repeat 2 25 0 380 242 121 15 chr3 47523356 47523488 -180001090 - MIR SINE MIR -36 226 81 1246 185 62 8 chr3 47523772 47524031 -180000547 + ORSL DNA AcHobo 2 274 -1 202 232 36 0 chr3 47526082 47526138 -179998440 - MIR SINE MIR -127 135 78 2322 104 7 0 chr3 47526361 47526670 -179997908 - AluSq SINE Alu -2 311 1 434 212 40 0 chr3 47526883 47526982 -179997596 + L2 LINE L2 3206 3308 -5 375 294 59 60 chr3 47528372 47528786 -179995792 - MLT1L LTR MaLR 0 615 100 488 286 27 20 chr3 47528865 47529012 -179995566 - MIR3 SINE MIR -31 177 30 964 247 43 0 chr3 47529745 47529976 -179994602 - LTR16A1 LTR ERVL -3 454 214 2137 124 7 0 chr3 47530258 47530557 -179994021 + AluSx SINE Alu 1 301 -11 181 286 71 0 chr3 47530878 47530934 -179993644 + MIR SINE MIR 203 262 0 1802 124 167 10 chr3 47531582 47531881 -179992697 + MER7A DNA MER2_type 2 345 -1 844 159 0 23 chr3 47532392 47532524 -179992054 - FLAM_C SINE Alu -4 129 1 666 207 0 0 chr3 47532581 47532697 -179991881 + FLAM_C SINE Alu 2 117 -26 6842 19 3 1 chr3 47533572 47534345 -179990233 - L1PA3 LINE L1 -2 6153 5380 372 275 0 0 chr3 47534453 47534544 -179990034 + FLAM_A SINE Alu 36 126 -7 977 144 46 41 chr3 47534687 47534882 -179989696 - MER20 DNA MER1_type -17 202 7 209 274 59 59 chr3 47534888 47534990 -179989588 + L2 LINE L2 3196 3297 -16 1101 224 116 21 chr3 47535782 47536162 -179988416 - L1MC4 LINE L1 -163 7879 7464 197 172 86 69 chr3 47536237 47536295 -179988283 + MIR SINE MIR 38 96 -112 252 231 15 0 chr3 47536536 47536601 -179987977 - HsTC2 DNA Tc2 -1829 69 4 21 100 0 0 chr3 47536692 47536762 -179987816 + AT_rich Low_complexity Low_complexity 1 70 0 3190 122 8 20 chr3 47536789 47537649 -179986929 + L1P4 LINE L1 4815 5664 -497 407 292 72 19 chr3 47537749 47538013 -179986565 + HAL1 LINE L1 1358 1635 -872 499 353 36 12 chr3 47538162 47538411 -179986167 + L1ME LINE L1 2 256 -5814 1523 142 92 72 chr3 47538733 47539093 -179985485 - MER4A LTR ERV1 -297 367 1 1196 201 102 102 chr3 47539114 47539595 -179984983 + LTR34 LTR ERV1 137 695 -4 556 305 65 28 chr3 47539618 47540253 -179984325 + L1ME LINE L1 2610 3328 -2752 200 347 165 37 chr3 47540950 47541325 -179983253 - L2 LINE L2 -1191 2123 1701 1387 239 81 22 chr3 47541358 47541768 -179982810 - MLT1C LTR MaLR 0 467 34 7252 4 0 2 chr3 47541807 47542603 -179981975 + L1HS LINE L1 5361 6154 -1 2272 199 97 8 chr3 47542641 47543248 -179981330 + L1MC4 LINE L1 6999 7659 -383 1840 60 0 0 chr3 47543369 47543585 -179980993 - AluY SINE Alu -95 216 1 1036 219 76 10 chr3 47543585 47543872 -179980706 - L1MDa LINE L1 -866 2035 1669 383 284 87 24 chr3 47544236 47544363 -179980215 + L2 LINE L2 3136 3270 -2 1887 129 4 4 chr3 47545095 47545375 -179979203 - L1MA7 LINE L1 -549 5742 5463 3003 127 28 0 chr3 47545376 47545848 -179978730 + L1MA7 LINE L1 5762 6246 -45 230 67 0 0 chr3 47545852 47545882 -179978696 - MADE1 DNA Mariner -29 51 22 338 217 66 28 chr3 47545884 47545990 -179978588 + L1ME4a LINE L1 958 1067 -5052 * 1374 275 109 12 chr3 47545989 47546767 -179977811 + L1ME4a LINE L1 2409 3262 -2867 887 272 160 48 chr3 47546924 47547567 -179977011 + L1ME4a LINE L1 3543 4257 -1872 282 265 77 43 chr3 47548147 47548264 -179976314 - MER94 DNA DNA -7 127 7 2737 152 28 72 chr3 47548959 47549663 -179974915 + pTR5 LTR ERV1 743 1415 -1023 907 194 88 9 chr3 47549832 47550049 -179974529 + L1MC4 LINE L1 7804 8037 -5 407 221 143 60 chr3 47550094 47550311 -179974267 + L1ME4a LINE L1 5748 5982 -139 189 0 0 0 chr3 47550312 47550333 -179974245 + (A)n Simple_repeat Simple_repeat 1 21 0 318 313 48 12 chr3 47550387 47550553 -179974025 + L1ME4a LINE L1 5056 5227 -902 191 149 0 21 chr3 47550635 47550682 -179973896 + (TAAAAA)n Simple_repeat Simple_repeat 1 46 0 1657 175 28 47 chr3 47550773 47551153 -179973425 - MER47B DNA MER2_type -1 417 4 269 239 62 8 chr3 47551161 47551291 -179973287 + (TAA)n Simple_repeat Simple_repeat 3 139 0 199 243 100 0 chr3 47554365 47554435 -179970143 + L2 LINE L2 3146 3222 -50 22 0 0 0 chr3 47556410 47556432 -179968146 + AT_rich Low_complexity Low_complexity 1 22 0 9652 115 24 19 chr3 47557205 47558657 -179965921 + Tigger1 DNA MER2_type 2 1460 -958 623 130 22 0 chr3 47558760 47558852 -179965726 + Tigger1 DNA MER2_type 2324 2417 -1 3070 127 2 8 chr3 47559127 47559609 -179964969 - L1MA4 LINE L1 -2 6298 5820 410 261 126 47 chr3 47559791 47560155 -179964423 + L1ME4a LINE L1 5501 5893 -211 387 215 70 51 chr3 47560173 47560331 -179964247 + L1ME4a LINE L1 5943 6103 -1 2229 158 14 3 chr3 47561643 47562005 -179962573 + MLT2D LTR ERVL 1 366 -48 534 265 7 0 chr3 47563792 47563943 -179960635 - MIR SINE MIR -14 248 97 207 286 163 10 chr3 47564148 47564246 -179960332 + MIR SINE MIR 150 262 0 340 234 172 28 chr3 47565037 47565182 -179959396 + MIR SINE MIR 18 183 -79 251 274 29 59 chr3 47565848 47565950 -179958628 - L1ME3A LINE L1 -104 6066 5968 6664 47 1 2 chr3 47566017 47566822 -179957756 - L1PA7 LINE L1 0 6154 5351 511 168 10 50 chr3 47567278 47567379 -179957199 - LTR52 LTR ERVL -309 112 16 21 0 0 0 chr3 47567379 47567400 -179957178 + AT_rich Low_complexity Low_complexity 1 21 0 2159 104 30 3 chr3 47567810 47567832 -179956746 - AluSq SINE Alu -8 305 285 198 0 0 0 chr3 47567832 47567854 -179956724 + (GA)n Simple_repeat Simple_repeat 1 22 0 2159 104 30 3 chr3 47567854 47568128 -179956450 - AluSq SINE Alu -28 285 1 3968 93 2 0 chr3 47568318 47568854 -179955724 - L1PA14 LINE L1 -4 6157 5621 587 266 0 19 chr3 47568961 47569119 -179955459 - MIR SINE MIR -48 214 60 302 264 0 0 chr3 47569169 47569256 -179955322 + MIR SINE MIR 176 262 0 256 302 88 19 chr3 47569886 47570045 -179954533 - L2 LINE L2 -20 3293 3124 513 271 58 10 chr3 47570108 47570315 -179954263 - L2 LINE L2 -185 3128 2912 252 273 0 0 chr3 47570641 47570729 -179953849 + (CA)n Simple_repeat Simple_repeat 2 89 0 276 262 126 39 chr3 47570873 47571079 -179953499 - HAL1 LINE L1 0 2507 2284 1341 291 106 37 chr3 47571766 47572764 -179951814 - HAL1 LINE L1 -629 1878 812 2093 179 62 7 chr3 47573001 47573404 -179951174 - MSTB LTR MaLR -1 425 1 2244 112 0 25 chr3 47574015 47574329 -179950249 - AluSx SINE Alu -6 306 1 938 247 104 19 chr3 47574576 47574942 -179949636 - MLT1H LTR MaLR -107 442 3 1857 168 3 7 chr3 47576773 47577065 -179947513 + AluJb SINE Alu 1 291 -21 533 247 6 67 chr3 47577396 47577574 -179947004 + MER5B DNA MER1_type 7 173 -5 2281 95 3 3 chr3 47577798 47578092 -179946486 + AluSc SINE Alu 1 294 -15 478 272 87 12 chr3 47578274 47578447 -179946131 - L2 LINE L2 0 3313 3128 1499 125 52 16 chr3 47578479 47578727 -179945851 - L1PA10 LINE L1 0 6168 5912 208 196 22 0 chr3 47578882 47578928 -179945650 + T-rich Low_complexity Low_complexity 5 51 0 43817 32 21 3 chr3 47578929 47584968 -179939610 - L1PA3 LINE L1 0 6155 1 257 357 109 19 chr3 47585708 47586019 -179938559 + L2 LINE L2 2636 2974 -340 306 260 30 80 chr3 47586103 47586303 -179938275 + L2 LINE L2 3124 3313 0 3451 125 14 6 chr3 47587298 47587809 -179936769 + MLT2B2 LTR ERVL 1 515 0 211 367 53 5 chr3 47587839 47588027 -179936551 + L2 LINE L2 2152 2348 -966 1674 174 40 3 chr3 47588292 47588590 -179935988 - MLT2C1 LTR ERVL -88 309 1 274 321 54 0 chr3 47588852 47588964 -179935614 + L2 LINE L2 3143 3260 -12 441 305 34 15 chr3 47589842 47590044 -179934534 + MIR SINE MIR 30 238 -24 2163 246 105 42 chr3 47591487 47592180 -179932398 - MER21B LTR ERV1 -107 756 20 1340 124 20 44 chr3 47592180 47592429 -179932149 - Tigger5 DNA MER2_type 0 2323 2081 269 180 0 33 chr3 47592423 47592484 -179932094 - Tigger5 DNA MER2_type -2245 78 20 * 509 293 22 36 chr3 47592622 47592847 -179931731 - MLT1H LTR MaLR -298 251 30 589 311 78 0 chr3 47593451 47593657 -179930921 + MIR SINE MIR 28 249 -13 291 264 167 21 chr3 47595535 47595679 -179928899 + MIR SINE MIR 21 185 -77 441 299 65 93 chr3 47595690 47595743 -179928835 - L2 LINE L2 -11 3261 3208 2252 103 103 0 chr3 47595743 47596073 -179928505 - THE1B LTR MaLR 0 364 1 441 299 65 93 chr3 47596073 47596451 -179928127 - L2 LINE L2 -64 3208 2842 21 57 0 0 chr3 47597883 47597918 -179926660 + AT_rich Low_complexity Low_complexity 1 35 0 2102 107 62 0 chr3 47598801 47599091 -179925487 + AluY SINE Alu 1 308 -3 248 250 17 0 chr3 47600078 47600138 -179924440 + MIR3 SINE MIR 123 183 -25 965 197 61 5 chr3 47600150 47600348 -179924230 - MER3 DNA MER1_type 0 209 1 1678 155 10 52 chr3 47600407 47600565 -179924013 + AluJo SINE Alu 1 141 -171 2295 96 6 13 chr3 47600565 47600878 -179923700 + AluSq SINE Alu 3 313 0 1678 155 10 52 chr3 47600878 47601028 -179923550 + AluJo SINE Alu 141 296 -16 192 349 24 0 chr3 47601175 47601258 -179923320 - MER5A DNA MER1_type -67 122 38 223 328 59 17 chr3 47602402 47602521 -179922057 + MIR3 SINE MIR 15 138 -70 270 231 52 13 chr3 47602591 47602722 -179921856 - MIR SINE MIR -8 254 49 191 155 35 103 chr3 47603657 47603715 -179920863 - L2 LINE L2 -84 3229 3176 265 252 101 42 chr3 47604256 47604375 -179920203 - L2 LINE L2 -3 3269 3144 550 313 91 29 chr3 47606800 47607142 -179917436 - MLT1J2 LTR MaLR -3 447 85 224 163 41 0 chr3 47608115 47608164 -179916414 + CT-rich Low_complexity Low_complexity 2 52 0 516 330 43 5 chr3 47608328 47608516 -179916062 - MIR SINE MIR -63 199 5 194 0 39 0 chr3 47608534 47608560 -179916018 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 324 284 10 10 chr3 47610198 47610300 -179914278 + MER5B DNA MER1_type 72 173 -5 2290 95 3 3 chr3 47610524 47610819 -179913759 + AluSc SINE Alu 1 295 -14 478 272 87 12 chr3 47611001 47611174 -179913404 - L2 LINE L2 0 3313 3128 1499 125 52 16 chr3 47611206 47611454 -179913124 - L1PA10 LINE L1 0 6168 5912 208 196 22 0 chr3 47611609 47611655 -179912923 + T-rich Low_complexity Low_complexity 5 51 0 6575 20 0 0 chr3 47611656 47612396 -179912182 - L1PA3 LINE L1 0 6155 5416 346 250 66 13 chr3 47612397 47612549 -179912029 + L1MC4a LINE L1 5818 5977 -1831 2731 45 6 3 chr3 47612666 47612998 -179911580 + L1PA3 LINE L1 5820 6152 -3 24 0 0 0 chr3 47612998 47613022 -179911556 + AT_rich Low_complexity Low_complexity 1 24 0 1545 271 49 13 chr3 47613624 47614097 -179910481 - LTR16C LTR ERVL -1 490 1 315 278 102 34 chr3 47614521 47614726 -179909852 - MIR SINE MIR -37 225 7 2279 99 3 0 chr3 47615824 47616116 -179908462 + AluSq SINE Alu 1 293 -20 264 261 45 36 chr3 47616445 47616556 -179908022 + MIR SINE MIR 33 144 -64 314 342 0 9 chr3 47617854 47617978 -179906600 + MIR SINE MIR 8 131 -77 657 219 169 0 chr3 47618007 47618167 -179906411 + MER5A DNA MER1_type 3 189 0 581 278 125 9 chr3 47618173 47618389 -179906189 + MIR SINE MIR 16 256 -6 201 196 0 0 chr3 47618520 47618571 -179906007 + (CA)n Simple_repeat Simple_repeat 2 52 0 195 258 32 16 chr3 47619020 47619082 -179905496 + MIR SINE MIR 117 179 -83 698 168 25 0 chr3 47619464 47619583 -179904995 - FLAM_C SINE Alu -11 122 1 280 74 0 37 chr3 47619638 47619692 -179904886 + (TA)n Simple_repeat Simple_repeat 2 53 0 25 75 0 0 chr3 47619697 47619750 -179904828 + AT_rich Low_complexity Low_complexity 1 53 0 726 203 28 40 chr3 47620521 47620698 -179903880 + MER97b DNA MER1_type? 4 178 -875 740 301 99 50 chr3 47620822 47622605 -179901973 - L1MC/D LINE L1 -523 5639 3885 1857 150 9 34 chr3 47622605 47622925 -179901653 - AluJb SINE Alu 0 312 1 740 301 99 50 chr3 47622925 47623028 -179901550 - L1MC/D LINE L1 -2277 3885 3788 320 300 96 63 chr3 47623201 47624015 -179900563 - L1MC/D LINE L1 -2642 3504 2664 2053 131 6 51 chr3 47624370 47624721 -179899857 - MER1B DNA MER1_type 0 337 3 222 136 0 23 chr3 47625615 47625659 -179898919 + (TTTTG)n Simple_repeat Simple_repeat 5 47 0 22 0 0 0 chr3 47625790 47625812 -179898766 + AT_rich Low_complexity Low_complexity 1 22 0 1271 102 112 10 chr3 47627502 47627708 -179896870 + MER30 DNA MER1_type 4 230 0 906 40 97 8 chr3 47628371 47628495 -179896083 - MER85 DNA T2_type -4 135 1 2143 114 0 7 chr3 47630231 47630560 -179894018 - AluSc SINE Alu 0 327 1 934 122 7 0 chr3 47630890 47631029 -179893549 + pTR5 LTR ERV1 253 392 -2046 324 304 37 60 chr3 47631205 47631422 -179893156 + MLT1J2 LTR MaLR 1 212 -238 473 232 84 26 chr3 47631481 47631636 -179892942 - MER5B DNA MER1_type -14 164 1 256 226 96 85 chr3 47631645 47631776 -179892802 + MLT1J1 LTR MaLR 268 403 -43 1735 161 16 48 chr3 47631776 47632087 -179892491 - AluJb SINE Alu -11 301 1 256 226 96 85 chr3 47632087 47632132 -179892446 + MLT1J1 LTR MaLR 403 446 0 960 228 57 0 chr3 47632334 47632562 -179892016 - MIR SINE MIR -1 261 21 307 289 17 28 chr3 47632597 47632741 -179891837 - L1ME LINE L1 -318 5803 5664 1013 126 41 6 chr3 47633099 47633339 -179891239 - L1MC/D LINE L1 -743 5403 5186 489 248 35 35 chr3 47633330 47633620 -179890958 - L1M4 LINE L1 -2964 3182 2893 * 2312 86 0 0 chr3 47633647 47633927 -179890651 + AluY SINE Alu 17 296 -15 2559 184 58 33 chr3 47634121 47634690 -179889888 + LTR60 LTR ERV1 1 583 -3 989 259 22 55 chr3 47635007 47635498 -179889080 + L1M4 LINE L1 2545 3018 -3128 2068 136 10 3 chr3 47635498 47635808 -179888770 + AluSx SINE Alu 1 312 0 989 259 22 55 chr3 47635808 47635864 -179888714 + L1M4 LINE L1 3018 3074 -3072 218 264 28 47 chr3 47635888 47635994 -179888584 + L2 LINE L2 1141 1244 -2070 191 309 152 13 chr3 47636264 47636640 -179887938 + L2 LINE L2 1403 1830 -1484 1226 153 115 23 chr3 47637219 47637482 -179887096 - MER1B DNA MER1_type 0 339 2 352 177 16 0 chr3 47638141 47638203 -179886375 + Charlie3 DNA MER1_type 164 226 -2484 * 550 175 0 10 chr3 47638201 47638298 -179886280 + Charlie3 DNA MER1_type 2617 2712 0 1807 131 21 3 chr3 47638303 47638593 -179885985 + L1MB3 LINE L1 5888 6182 -1 436 288 59 48 chr3 47639740 47640011 -179884567 + L1ME LINE L1 5531 5804 -317 319 269 114 54 chr3 47640493 47640660 -179883918 - MER20B DNA MER1_type -606 177 1 298 214 83 48 chr3 47642118 47642202 -179882376 - L2 LINE L2 -17 3255 3169 1797 197 66 35 chr3 47642566 47643018 -179881560 + MLT1C LTR MaLR 1 466 -1 365 186 147 10 chr3 47643405 47643507 -179881071 - MER106B DNA MER1_type 0 1059 944 290 234 31 0 chr3 47643639 47643703 -179880875 - MER106A DNA MER1_type -168 68 3 353 237 61 18 chr3 47643704 47643818 -179880760 + MIR SINE MIR 30 148 -114 5074 154 17 11 chr3 47694023 47694578 -179830000 - L1 LINE L1 -1810 4336 3773 589 51 0 13 chr3 47694578 47694657 -179829921 - L1PA5 LINE L1 0 6154 6077 5074 154 17 11 chr3 47694657 47694983 -179829595 - L1 LINE L1 -2373 3773 3450 485 187 78 42 chr3 47695009 47695154 -179829424 - Charlie4 DNA MER1_type -5 1956 1803 2858 112 0 3 chr3 47695154 47695519 -179829059 - THE1B LTR MaLR 0 364 1 485 187 78 42 chr3 47695519 47695539 -179829039 - Charlie4 DNA MER1_type -158 1803 1785 993 99 0 0 chr3 47695541 47695693 -179828885 + (TA)n Simple_repeat Simple_repeat 2 153 0 23 0 0 53 chr3 47696095 47696116 -179828462 + AT_rich Low_complexity Low_complexity 1 21 -15 2422 84 0 0 chr3 47696116 47696413 -179828165 + AluY SINE Alu 1 297 -14 23 0 0 53 chr3 47696413 47696429 -179828149 + AT_rich Low_complexity Low_complexity 21 36 0 1371 139 0 5 chr3 47696598 47696806 -179827772 - MER4E LTR ERV1 0 766 560 2393 121 16 75 chr3 47696981 47697421 -179827157 - MER4B LTR ERV1 -196 414 1 208 148 37 19 chr3 47697952 47698006 -179826572 + (TTAAA)n Simple_repeat Simple_repeat 4 58 0 1676 155 55 10 chr3 47698465 47698756 -179825822 + AluJo SINE Alu 3 306 -6 2467 253 73 88 chr3 47698859 47699937 -179824641 + MER52A LTR ERV1 660 1721 -34 356 210 0 0 chr3 47699958 47700020 -179824558 - MER50 LTR ERV1 -23 711 650 180 150 0 75 chr3 47700402 47700442 -179824136 - MIR SINE MIR -6 256 220 1157 276 83 24 chr3 47700473 47700933 -179823645 + LTR16C LTR ERVL 5 491 0 939 287 29 4 chr3 47701050 47701322 -179823256 - Charlie8 DNA MER1_type -2138 279 1 458 350 128 14 chr3 47701325 47701685 -179822893 - L2 LINE L2 -1387 1927 1527 24 0 0 0 chr3 47701775 47701799 -179822779 + AT_rich Low_complexity Low_complexity 1 24 0 2192 124 0 0 chr3 47701799 47702089 -179822489 + AluSx SINE Alu 4 293 -19 340 248 26 0 chr3 47702113 47702226 -179822352 - L1ME4a LINE L1 0 6121 6006 1612 201 7 7 chr3 47702226 47702525 -179822053 - MER41D LTR ERV1 0 557 259 860 119 0 0 chr3 47702525 47702643 -179821935 + FLAM_C SINE Alu 23 140 -3 1670 154 26 0 chr3 47702647 47702914 -179821664 - MER41D LTR ERV1 -283 274 1 309 295 25 0 chr3 47702937 47703059 -179821519 - L1ME4a LINE L1 -179 5942 5818 1241 254 106 18 chr3 47703074 47703564 -179821014 + MLT1G1 LTR MaLR 12 536 -54 909 251 66 19 chr3 47703577 47703848 -179820730 - L1ME4a LINE L1 -318 5803 5520 2250 159 73 10 chr3 47704264 47704673 -179819905 - L1MB5 LINE L1 -9 6165 5731 2220 103 11 0 chr3 47704783 47705065 -179819513 - AluSx SINE Alu -27 285 1 597 256 12 12 chr3 47706226 47706394 -179818184 - MLT1K LTR MaLR -2 586 419 872 129 0 48 chr3 47706611 47706758 -179817820 + MLT1A1 LTR MaLR 1 140 -225 231 36 0 0 chr3 47706867 47706895 -179817683 + (GGAA)n Simple_repeat Simple_repeat 3 30 0 1886 131 18 4 chr3 47706895 47707160 -179817418 + AluSx SINE Alu 9 280 -32 911 121 7 0 chr3 47707163 47707194 -179817384 + (GA)n Simple_repeat Simple_repeat 1 181 0 911 121 7 0 chr3 47707194 47707343 -179817235 + (GA)n Simple_repeat Simple_repeat 2 151 0 6294 147 5 46 chr3 47707381 47708380 -179816198 + L1MA6 LINE L1 4372 5246 -1054 2426 81 3 0 chr3 47708380 47708687 -179815891 - AluY SINE Alu -3 308 1 6294 147 5 46 chr3 47708687 47709699 -179814879 + L1MA6 LINE L1 5246 6299 -1 298 279 23 0 chr3 47709834 47709920 -179814658 + L2 LINE L2 3181 3268 -4 1774 219 60 54 chr3 47710411 47710619 -179813959 + MLT2B1 LTR ERVL 1 206 -314 1693 167 7 36 chr3 47710619 47710925 -179813653 + AluJo SINE Alu 1 297 -15 1774 219 60 54 chr3 47710925 47711233 -179813345 + MLT2B1 LTR ERVL 206 520 0 189 196 0 0 chr3 47711471 47711517 -179813061 + (CA)n Simple_repeat Simple_repeat 2 47 0 422 272 8 24 chr3 47711713 47711838 -179812740 - MIR3 SINE MIR -54 154 32 378 291 37 45 chr3 47712039 47712173 -179812405 - L2 LINE L2 -4 3268 3136 704 337 89 40 chr3 47712876 47713232 -179811346 - L2 LINE L2 -371 2943 2606 1098 208 33 0 chr3 47713232 47713444 -179811134 + MER20 DNA MER1_type 1 219 0 704 337 89 40 chr3 47713444 47713921 -179810657 - L2 LINE L2 -708 2606 2069 1929 131 10 30 chr3 47714009 47714306 -179810272 - AluSx SINE Alu -21 291 1 272 286 45 15 chr3 47714379 47714512 -179810066 - L1ME LINE L1 -719 5432 5296 268 315 133 13 chr3 47714637 47715021 -179809557 - L1ME LINE L1 -984 5162 4733 237 33 0 0 chr3 47715073 47715103 -179809475 + (TG)n Simple_repeat Simple_repeat 2 31 0 432 37 0 0 chr3 47715704 47715758 -179808820 + (CA)n Simple_repeat Simple_repeat 1 54 0 23 68 0 0 chr3 47716853 47716897 -179807681 + GC_rich Low_complexity Low_complexity 1 44 0 444 19 0 0 chr3 47718315 47718368 -179806210 + (CA)n Simple_repeat Simple_repeat 1 53 0 731 284 34 0 chr3 47719156 47719360 -179805218 - L1MC/D LINE L1 -2074 5734 5524 907 154 56 6 chr3 47719669 47719831 -179804747 + MER3 DNA MER1_type 5 127 -82 1560 175 39 4 chr3 47719957 47720237 -179804341 - AluJo SINE Alu -22 290 1 249 170 0 0 chr3 47720282 47720335 -179804243 - L1ME2 LINE L1 0 6164 6112 627 235 82 15 chr3 47720488 47720684 -179803894 - L1ME1 LINE L1 -57 6109 5901 1967 162 3 3 chr3 47720697 47721005 -179803573 - AluSx SINE Alu -4 308 1 2197 132 3 0 chr3 47721137 47721448 -179803130 + AluSx SINE Alu 1 312 0 822 116 39 16 chr3 47722203 47722332 -179802246 + FLAM_C SINE Alu 2 133 0 867 160 0 0 chr3 47722416 47722541 -179802037 + FLAM_C SINE Alu 1 125 -18 509 212 129 8 chr3 47722947 47723079 -179801499 - MER58C DNA MER1_type -1 214 67 2245 58 0 18 chr3 47723540 47723817 -179800761 + AluY SINE Alu 36 307 -4 1969 149 0 34 chr3 47723841 47724164 -179800414 - AluSx SINE Alu 0 312 1 454 305 115 11 chr3 47724557 47724731 -179799847 + MER115 DNA AcHobo 2 193 -500 398 291 31 31 chr3 47724772 47724899 -179799679 + MER115 DNA AcHobo 298 424 -269 858 253 127 67 chr3 47725146 47725609 -179798969 - LTR16C LTR ERVL 0 491 1 342 255 32 0 chr3 47725618 47725712 -179798866 - MIR SINE MIR -105 157 61 195 42 0 0 chr3 47726933 47726957 -179797621 + (T)n Simple_repeat Simple_repeat 1 24 0 199 261 198 36 chr3 47727195 47727306 -179797272 + MIR SINE MIR 8 136 -126 258 32 0 0 chr3 47727309 47727340 -179797238 + (ATATG)n Simple_repeat Simple_repeat 3 33 0 183 80 0 0 chr3 47727433 47727458 -179797120 + (TAA)n Simple_repeat Simple_repeat 3 27 0 325 303 112 4 chr3 47728583 47728754 -179795824 + L1ME4a LINE L1 5715 5921 -200 1542 159 4 16 chr3 47728754 47729005 -179795573 + AluJb SINE Alu 1 248 -64 325 303 112 4 chr3 47729005 47729074 -179795504 + L1ME4a LINE L1 5921 5981 -140 205 275 187 0 chr3 47729251 47729342 -179795236 - MIR SINE MIR -123 139 32 1097 76 0 0 chr3 47729799 47729930 -179794648 + AluSq/x SINE Alu 1 131 -181 725 196 30 12 chr3 47730110 47730278 -179794300 - MER5B DNA MER1_type -6 172 2 398 252 7 43 chr3 47730703 47730842 -179793736 + MIR SINE MIR 17 150 -58 1064 191 150 31 chr3 47730845 47731139 -179793439 - LTR40b LTR ERVL -1 461 133 1136 168 51 9 chr3 47731217 47731431 -179793147 - MER58 DNA MER1_type -118 223 1 275 213 102 56 chr3 47731591 47731699 -179792879 - L1ME3A LINE L1 -241 5929 5817 2458 99 0 0 chr3 47731702 47732014 -179792564 - AluSx SINE Alu 0 312 1 827 268 42 23 chr3 47732036 47732451 -179792127 - L1ME3A LINE L1 -751 5395 5006 408 260 32 16 chr3 47733045 47733168 -179791410 - LTR16A LTR ERVL -233 217 93 2141 126 14 0 chr3 47733249 47733543 -179791035 - AluJo SINE Alu -13 299 2 543 229 80 40 chr3 47733772 47733947 -179790631 + MIR SINE MIR 81 262 0 2224 113 3 0 chr3 47734821 47735112 -179789466 + AluSx SINE Alu 3 294 -18 912 293 84 41 chr3 47735498 47736154 -179788424 - L2 LINE L2 0 3313 2628 554 237 17 0 chr3 47736368 47736486 -179788092 + MER20 DNA MER1_type 2 121 -98 236 250 34 23 chr3 47736489 47736577 -179788001 + L2 LINE L2 2863 2951 -362 551 161 21 0 chr3 47736581 47736674 -179787904 + MER20 DNA MER1_type 125 219 0 594 288 34 22 chr3 47736680 47736947 -179787631 - L2 LINE L2 -735 2579 2310 1542 209 10 16 chr3 47736947 47737258 -179787320 - MER58B DNA MER1_type 0 341 33 643 254 144 10 chr3 47737285 47737584 -179786994 - L2 LINE L2 -1008 2306 1968 1523 244 73 28 chr3 47737605 47738250 -179786328 + L1MC5 LINE L1 7275 7886 -75 282 242 71 0 chr3 47738438 47738505 -179786073 - L1ME4a LINE L1 -5 6116 6038 804 178 0 22 chr3 47738505 47738640 -179785938 + FLAM_A SINE Alu 2 133 0 282 242 71 0 chr3 47738640 47738671 -179785907 - L1ME4a LINE L1 -83 6038 6011 210 197 28 28 chr3 47738698 47738729 -179785849 + (TA)n Simple_repeat Simple_repeat 1 31 -40 2142 101 21 3 chr3 47738729 47739016 -179785562 + AluSq SINE Alu 1 292 -21 210 197 28 28 chr3 47739016 47739055 -179785523 + (TA)n Simple_repeat Simple_repeat 30 71 0 614 249 44 15 chr3 47739512 47739717 -179784861 + L1MC5 LINE L1 5759 5969 -1839 2160 136 0 3 chr3 47739912 47740220 -179784358 + AluSx SINE Alu 1 307 -5 1068 198 104 53 chr3 47740221 47740616 -179783962 + L1MC5 LINE L1 7164 7578 -383 222 218 0 58 chr3 47740616 47740703 -179783875 + GA-rich Low_complexity Low_complexity 6 87 0 616 200 103 107 chr3 47740710 47740762 -179783816 + L1MC5 LINE L1 7609 7660 -301 2289 119 0 0 chr3 47740762 47741072 -179783506 + AluSx SINE Alu 1 310 -2 616 200 103 107 chr3 47741072 47741329 -179783249 + L1MC5 LINE L1 7660 7917 -44 802 217 87 130 chr3 47745096 47745451 -179779127 + MER102b DNA MER1_type 1 340 -1 216 186 23 0 chr3 47745979 47746022 -179778556 + CT-rich Low_complexity Low_complexity 3 46 0 1940 133 157 21 chr3 47746976 47747353 -179777225 - MSTA LTR MaLR 0 428 1 186 222 111 0 chr3 47748143 47748197 -179776381 + MIR SINE MIR 87 146 -62 457 237 191 35 chr3 47748359 47748642 -179775936 - L1ME4a LINE L1 0 6121 5795 331 307 40 32 chr3 47749301 47749552 -179775026 - L1ME4a LINE L1 -1537 4609 4357 2441 83 0 13 chr3 47749977 47750291 -179774287 - AluY SINE Alu 0 311 2 298 225 0 62 chr3 47750520 47750600 -179773978 + MIR3 SINE MIR 87 161 -47 858 154 0 0 chr3 47750626 47750756 -179773822 + FLAM_C SINE Alu 1 130 -3 2296 111 3 0 chr3 47751400 47751697 -179772881 - AluSx SINE Alu -14 298 1 759 218 64 44 chr3 47751913 47752211 -179772367 + L1MC4a LINE L1 5660 5963 -1845 182 358 73 0 chr3 47752395 47752504 -179772074 + MIR SINE MIR 120 236 -26 225 0 0 0 chr3 47752508 47752533 -179772045 + (CA)n Simple_repeat Simple_repeat 1 25 0 3864 42 0 15 chr3 47752702 47753197 -179771381 - L1PA3 LINE L1 0 6155 5689 362 300 13 27 chr3 47753852 47754002 -179770576 + MIR SINE MIR 102 249 -13 361 292 50 0 chr3 47754558 47754678 -179769900 + L2 LINE L2 3147 3272 0 228 172 0 0 chr3 47754922 47754980 -179769598 + (TA)n Simple_repeat Simple_repeat 2 59 0 2349 100 6 0 chr3 47755509 47755820 -179768758 + AluSp SINE Alu 1 313 0 2215 119 0 25 chr3 47755988 47756308 -179768270 + AluSx SINE Alu 1 312 0 2351 88 16 0 chr3 47756470 47756777 -179767801 - AluSx SINE Alu 0 312 1 687 283 69 27 chr3 47756792 47757251 -179767327 + L1ME3 LINE L1 2158 2590 -3625 237 191 0 0 chr3 47757499 47757546 -179767032 + MIR SINE MIR 83 129 -79 1675 163 4 11 chr3 47759890 47760166 -179764412 + AluJb SINE Alu 1 274 -38 288 0 0 0 chr3 47760168 47760200 -179764378 + (TC)n Simple_repeat Simple_repeat 1 32 0 270 0 0 0 chr3 47760199 47760229 -179764349 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 2473 207 73 13 chr3 47760342 47760874 -179763704 + MLT1E2 LTR MaLR 63 626 0 1550 266 104 9 chr3 47761180 47762086 -179762492 + L1ME3 LINE L1 4896 5899 -332 2088 89 30 0 chr3 47762100 47762407 -179762171 - AluSg SINE Alu 0 315 1 1804 172 17 96 chr3 47762531 47762937 -179761641 - MLT1A2 LTR MaLR 0 374 1 323 313 159 11 chr3 47763054 47763236 -179761342 + MIR SINE MIR 48 256 -6 247 369 39 10 chr3 47763262 47763365 -179761213 - L2 LINE L2 0 3272 3167 234 129 157 71 chr3 47763512 47763582 -179760996 + L1MC5 LINE L1 7603 7678 -283 2034 136 0 3 chr3 47763586 47763873 -179760705 + AluSx SINE Alu 1 286 -26 494 252 68 56 chr3 47763885 47763940 -179760638 + L1MC5 LINE L1 7664 7717 -244 2054 113 66 60 chr3 47763940 47764275 -179760303 - MER1B DNA MER1_type 0 337 1 494 252 68 56 chr3 47764275 47764322 -179760256 + L1MC5 LINE L1 7717 7762 -199 1664 195 59 44 chr3 47764322 47764712 -179759866 - MLT2C1 LTR ERVL -1 396 1 494 252 68 56 chr3 47764712 47764858 -179759720 + L1MC5 LINE L1 7762 7916 -45 2446 87 10 0 chr3 47764883 47765193 -179759385 + AluSp SINE Alu 1 313 0 243 0 0 0 chr3 47765193 47765220 -179759358 + (TA)n Simple_repeat Simple_repeat 2 28 0 346 240 29 0 chr3 47765288 47765392 -179759186 - L1ME4a LINE L1 -195 5926 5820 317 314 24 40 chr3 47765392 47765516 -179759062 + MIR SINE MIR 8 129 -133 1337 282 114 19 chr3 47765548 47766377 -179758201 - L2 LINE L2 0 3313 2353 812 258 122 25 chr3 47766413 47766667 -179757911 + HAL1 LINE L1 98 326 -2181 2230 94 7 29 chr3 47766667 47766976 -179757602 + AluSg SINE Alu 1 302 -8 812 258 122 25 chr3 47766976 47767347 -179757231 + HAL1 LINE L1 326 830 -1677 2218 121 0 13 chr3 47767362 47767677 -179756901 + AluSx SINE Alu 2 312 0 248 28 56 0 chr3 47767680 47767716 -179756862 + (GAAAA)n Simple_repeat Simple_repeat 3 40 0 732 183 30 23 chr3 47767912 47768069 -179756509 - FLAM_A SINE Alu 0 133 1 609 209 96 34 chr3 47768150 47768327 -179756251 + MLT1D LTR MaLR 207 394 -111 299 365 30 18 chr3 47768549 47768716 -179755862 + L1ME LINE L1 5509 5677 -444 * 412 152 22 22 chr3 47768699 47768791 -179755787 + L1MC5 LINE L1 7690 7781 -180 1120 165 83 32 chr3 47768803 47769022 -179755556 + MER33 DNA MER1_type 1 235 -2350 1665 183 3 18 chr3 47769022 47769328 -179755250 + AluJo SINE Alu 1 302 0 1120 165 83 32 chr3 47769328 47769385 -179755193 + MER33 DNA MER1_type 235 288 -36 411 224 10 20 chr3 47769520 47769618 -179754960 + L1MC5 LINE L1 7821 7917 -44 1557 177 3 62 chr3 47769622 47769927 -179754651 + AluJo SINE Alu 3 289 -23 256 206 8 119 chr3 47769993 47770119 -179754459 + L1ME LINE L1 5711 5822 -299 397 274 34 0 chr3 47770126 47770243 -179754335 - MIR SINE MIR 0 262 142 2325 222 94 67 chr3 47770312 47770470 -179754108 + HAL1 LINE L1 884 1036 -1471 779 175 40 0 chr3 47770470 47770596 -179753982 - FLAM_A SINE Alu -2 131 1 2325 222 94 67 chr3 47770596 47771347 -179753231 + HAL1 LINE L1 1036 1818 -689 7082 32 1 1 chr3 47771398 47772181 -179752397 + L1PA5 LINE L1 5370 6152 -2 1212 155 0 18 chr3 47772214 47772465 -179752113 + AluJo SINE Alu 1 295 -17 1250 229 31 10 chr3 47772465 47772757 -179751821 + L1ME3 LINE L1 5776 6073 -89 1856 144 7 23 chr3 47772760 47773059 -179751519 + AluJb SINE Alu 12 305 -7 2090 135 3 0 chr3 47773202 47773513 -179751065 + AluSx SINE Alu 1 312 0 1990 107 67 0 chr3 47773523 47773793 -179750785 + AluSx SINE Alu 1 288 -24 1331 100 0 62 chr3 47773819 47774029 -179750549 + AluSg SINE Alu 1 197 -113 770 90 17 56 chr3 47774033 47774211 -179750367 + (GAAA)n Simple_repeat Simple_repeat 2 172 0 702 259 152 45 chr3 47774553 47774954 -179749624 + MLT1J LTR MaLR 22 465 -46 25 0 0 0 chr3 47775259 47775284 -179749294 + AT_rich Low_complexity Low_complexity 1 25 0 1342 187 234 16 chr3 47775524 47775934 -179748644 + MER52A LTR ERV1 1 609 -1146 1783 231 116 49 chr3 47776343 47776925 -179747653 - L2 LINE L2 -3 3310 2769 1912 238 49 55 chr3 47776925 47777522 -179747056 - MLT1E LTR MaLR 0 593 1 1783 231 116 49 chr3 47777522 47777678 -179746900 - L2 LINE L2 -544 2769 2625 2054 110 3 7 chr3 47777678 47778004 -179746574 + AluSx SINE Alu 1 325 0 1783 231 116 49 chr3 47778004 47778141 -179746437 - L2 LINE L2 -688 2625 2358 3876 89 14 23 chr3 47778273 47778669 -179745909 + L1MA2 LINE L1 5750 6141 -163 2518 72 0 0 chr3 47778669 47778975 -179745603 + AluY SINE Alu 1 306 -5 3876 89 14 23 chr3 47778975 47779138 -179745440 + L1MA2 LINE L1 6141 6304 0 195 69 0 0 chr3 47779145 47779174 -179745404 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 549 212 152 86 chr3 47779373 47779571 -179745007 + MIR SINE MIR 16 226 -36 771 219 56 30 chr3 47779773 47780075 -179744503 + L1MC5 LINE L1 7618 7927 -34 1405 215 138 40 chr3 47780321 47780968 -179743610 + L2 LINE L2 2616 3313 0 318 247 26 0 chr3 47781358 47781435 -179743143 - L2 LINE L2 0 3313 3235 1729 134 56 21 chr3 47781608 47781892 -179742686 + AluJb SINE Alu 6 299 -13 324 0 0 0 chr3 47781941 47781977 -179742601 + (CA)n Simple_repeat Simple_repeat 1 36 0 3202 153 123 12 chr3 47782340 47782942 -179741636 + LTR65 LTR ERV1 1 669 0 209 307 84 50 chr3 47784180 47784359 -179740219 - L2 LINE L2 -443 2871 2687 231 291 87 16 chr3 47784380 47784507 -179740071 + MER5A DNA MER1_type 2 137 -52 1199 200 114 64 chr3 47784514 47784598 -179739980 - L1ME3A LINE L1 -5 6165 6087 825 126 7 22 chr3 47784598 47784733 -179739845 + FLAM_A SINE Alu 1 133 0 1199 200 114 64 chr3 47784733 47785114 -179739464 - L1ME3A LINE L1 -83 6087 5677 575 314 153 25 chr3 47785155 47785787 -179738791 - L2 LINE L2 -4 3309 2593 970 203 18 0 chr3 47785934 47786097 -179738481 + FAM SINE Alu 2 167 -8 1991 113 0 77 chr3 47786110 47786437 -179738141 + AluSg SINE Alu 1 302 -8 285 193 241 0 chr3 47786494 47786577 -179738001 + L1MC4 LINE L1 7416 7518 -524 747 212 46 54 chr3 47786604 47786845 -179737733 + L1MC4 LINE L1 7599 7837 -205 870 186 6 6 chr3 47786863 47787019 -179737559 + FRAM SINE Alu 1 156 -20 2188 98 0 7 chr3 47787025 47787320 -179737258 + AluSg SINE Alu 2 294 -16 502 189 46 0 chr3 47787322 47787473 -179737105 + L1MC4 LINE L1 7846 8041 -1 204 40 0 0 chr3 47787756 47787781 -179736797 + (CACG)n Simple_repeat Simple_repeat 3 27 0 263 203 17 34 chr3 47788762 47788821 -179735757 + MIR SINE MIR 184 241 -21 1735 134 16 42 chr3 47789431 47789737 -179734841 + AluJb SINE Alu 7 304 -8 2473 52 7 19 chr3 47790105 47790412 -179734166 + AluY SINE Alu 1 303 -8 21 0 0 0 chr3 47790706 47790727 -179733851 + AT_rich Low_complexity Low_complexity 1 21 0 1579 197 35 7 chr3 47790783 47791073 -179733505 + AluSx SINE Alu 7 304 -8 1694 123 120 21 chr3 47791128 47791412 -179733166 - AluSx SINE Alu 0 312 1 274 275 181 12 chr3 47791619 47791779 -179732799 + MIR SINE MIR 19 205 -57 4875 133 25 104 chr3 47791785 47791989 -179732589 + MER4D LTR ERV1 1 220 -683 2317 78 10 0 chr3 47791989 47792283 -179732295 - AluSg SINE Alu -13 297 1 4875 133 25 104 chr3 47792283 47792682 -179731896 + MER4D LTR ERV1 220 499 -404 2681 43 0 0 chr3 47792682 47792986 -179731592 - AluY SINE Alu -7 304 1 4875 133 25 104 chr3 47792986 47793362 -179731216 + MER4D LTR ERV1 499 903 0 245 246 66 25 chr3 47793565 47793687 -179730891 + L2 LINE L2 2289 2415 -899 311 189 0 29 chr3 47793691 47793762 -179730816 + Alu SINE Alu 235 281 -21 323 295 138 52 chr3 47793912 47794377 -179730201 - L1M4 LINE L1 -2678 3468 2964 864 118 0 0 chr3 47794382 47794509 -179730069 - AluSg/x SINE Alu 0 312 186 1053 172 59 25 chr3 47794522 47794726 -179729852 + L1 LINE L1 3780 3990 -2156 2209 120 0 3 chr3 47794742 47795042 -179729536 + AluSx SINE Alu 1 299 -13 1946 151 3 10 chr3 47795054 47795366 -179729212 + AluSx SINE Alu 1 310 -2 2838 122 33 31 chr3 47795416 47795841 -179728737 + MSTC LTR MaLR 3 428 0 507 220 137 42 chr3 47795864 47796032 -179728546 - MLT1J LTR MaLR -327 184 1 1762 165 29 4 chr3 47796425 47796704 -179727874 + AluJo SINE Alu 1 286 -26 186 133 0 0 chr3 47796704 47796734 -179727844 + (TA)n Simple_repeat Simple_repeat 1 30 0 247 311 0 0 chr3 47796943 47797004 -179727574 + polypyrimidine Low_complexity Low_complexity 2 62 0 252 341 109 7 chr3 47797391 47797529 -179727049 - Charlie8 DNA MER1_type -2159 258 107 221 234 0 0 chr3 47797645 47797692 -179726886 + MIR SINE MIR 210 256 -6 608 264 61 39 chr3 47798111 47798342 -179726236 + MIR SINE MIR 20 255 -7 180 0 0 0 chr3 47798716 47798736 -179725842 + (CA)n Simple_repeat Simple_repeat 2 21 0 1066 202 18 14 chr3 47798872 47799095 -179725483 + L1MEc LINE L1 35 258 -6138 948 204 17 0 chr3 47799096 47799272 -179725306 - MSTD LTR MaLR 0 396 218 2551 217 8 8 chr3 47799284 47799819 -179724759 - MSTD-int LTR MaLR -1199 536 2 2031 181 29 72 chr3 47799821 47800235 -179724343 - MSTD LTR MaLR 0 396 1 444 303 74 26 chr3 47800235 47800506 -179724072 + L1MEc LINE L1 255 538 -5858 1216 252 78 25 chr3 47800534 47800801 -179723777 - MLT2F LTR ERVL -32 620 369 1838 160 3 6 chr3 47800801 47801114 -179723464 - AluJb SINE Alu 0 312 1 1216 252 78 25 chr3 47801114 47801384 -179723194 - MLT2F LTR ERVL -283 369 1 1954 241 77 47 chr3 47801385 47801811 -179722767 + L1MEc LINE L1 1170 1581 -4815 606 181 14 51 chr3 47801811 47801949 -179722629 + FLAM_C SINE Alu 1 133 0 1954 241 77 47 chr3 47801949 47802337 -179722241 + L1MEc LINE L1 1581 2009 -4387 180 333 100 0 chr3 47802340 47802430 -179722148 - L2 LINE L2 -17 3255 3157 350 296 158 0 chr3 47803412 47803608 -179720970 - MIR SINE MIR -32 230 4 1473 225 49 42 chr3 47804139 47804592 -179719986 + LTR40c LTR ERVL 5 460 -5 2874 10 0 0 chr3 47805564 47805872 -179718706 - AluYa5 SINE Alu -3 308 1 1357 245 22 7 chr3 47806146 47806528 -179718050 - LTR16B LTR ERVL -2 462 2 482 161 43 0 chr3 47807064 47807157 -179717421 - MER33 DNA MER1_type -1 362 266 577 216 8 4 chr3 47807165 47807291 -179717287 - MER33 DNA MER1_type -262 62 1 207 100 0 0 chr3 47807394 47807424 -179717154 + (T)n Simple_repeat Simple_repeat 1 30 0 264 276 150 8 chr3 47807911 47808038 -179716540 + MIR SINE MIR 117 261 -1 1675 165 115 72 chr3 47808067 47808553 -179716025 + Charlie4a DNA MER1_type 1 507 -1 750 184 109 23 chr3 47808872 47809046 -179715532 + MER5A DNA MER1_type 1 189 0 200 119 0 24 chr3 47809653 47809695 -179714883 + (TCC)n Simple_repeat Simple_repeat 1 41 0 212 251 131 77 chr3 47812659 47812842 -179711736 - MIR SINE MIR -29 233 41 1657 152 40 11 chr3 47812939 47813216 -179711362 + AluSx SINE Alu 3 287 -25 2523 72 7 0 chr3 47815157 47815462 -179709116 + AluSp SINE Alu 1 307 -6 2250 85 7 0 chr3 47816013 47816322 -179708256 - AluSp SINE Alu 0 312 2 23 0 0 0 chr3 47816323 47816346 -179708232 + AT_rich Low_complexity Low_complexity 1 23 0 929 154 43 0 chr3 47816349 47816511 -179708067 - L1MA5 LINE L1 0 6300 6132 1881 122 64 17 chr3 47816603 47816899 -179707679 + AluSx SINE Alu 3 312 0 197 313 38 0 chr3 47818041 47818121 -179706457 - MIR SINE MIR 0 262 180 354 296 40 68 chr3 47818137 47818313 -179706265 + L2 LINE L2 1013 1183 -2131 666 278 111 41 chr3 47818340 47818728 -179705850 + L2 LINE L2 1325 1739 -1575 983 299 92 43 chr3 47818748 47819534 -179705044 + L2 LINE L2 2365 3238 -75 1542 242 27 83 chr3 47819534 47820054 -179704524 + LTR16C LTR ERVL 1 491 0 983 299 92 43 chr3 47820054 47820134 -179704444 + L2 LINE L2 3238 3313 0 339 280 75 23 chr3 47820560 47820744 -179703834 + L1P LINE L1 4881 5076 -1070 1680 177 10 3 chr3 47820772 47821060 -179703518 + AluJo SINE Alu 1 290 -22 273 106 21 0 chr3 47821063 47821110 -179703468 - L1MB3 LINE L1 -10 6173 6126 324 70 0 0 chr3 47821437 47821480 -179703098 + (TG)n Simple_repeat Simple_repeat 2 44 0 256 208 13 13 chr3 47821480 47821557 -179703021 + (TA)n Simple_repeat Simple_repeat 2 78 0 207 118 71 0 chr3 47821647 47821732 -179702846 + (TA)n Simple_repeat Simple_repeat 2 92 0 1313 162 0 0 chr3 47822231 47822422 -179702156 + AluSx SINE Alu 1 191 -121 1053 150 6 11 chr3 47822988 47823168 -179701410 - L1MB8 LINE L1 0 6178 6000 1785 192 33 6 chr3 47823171 47823535 -179701043 - L1M4 LINE L1 -1096 5050 4677 6224 125 19 17 chr3 47823974 47825119 -179699459 + L1PA16 LINE L1 5015 6166 0 1267 182 20 29 chr3 47825155 47825500 -179699078 - MER58B DNA MER1_type -10 331 4 230 264 21 156 chr3 47825973 47826261 -179698317 + MIR SINE MIR 14 262 0 679 260 119 17 chr3 47826404 47826765 -179697813 - L1M4 LINE L1 -2829 3317 2920 186 43 0 0 chr3 47826765 47826788 -179697790 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2384 43 0 4 chr3 47826790 47827071 -179697507 - AluY SINE Alu -31 280 1 180 0 0 0 chr3 47827993 47828013 -179696565 + (CA)n Simple_repeat Simple_repeat 2 21 0 464 255 178 19 chr3 47828092 47828249 -179696329 - MER5A DNA MER1_type -1 188 7 5026 60 46 32 chr3 47828319 47828975 -179695603 - PABL_B LTR ERV1 0 667 3 404 322 33 33 chr3 47828980 47829194 -179695384 + MIR SINE MIR 28 241 -21 227 301 68 45 chr3 47829308 47829441 -179695137 - MER5A DNA MER1_type -6 183 48 215 273 93 73 chr3 47829325 47829475 -179695103 + MER5A DNA MER1_type 36 188 -1 * 404 264 113 11 chr3 47829903 47830071 -179694507 + L1ME LINE L1 5589 5776 -345 507 344 124 26 chr3 47830078 47830657 -179693921 - L2 LINE L2 -341 2973 2338 836 134 8 16 chr3 47830658 47830785 -179693793 - FLAM_C SINE Alu -12 131 6 640 269 108 0 chr3 47830790 47830976 -179693602 - L2 LINE L2 -965 2349 2144 22 0 0 0 chr3 47831416 47831438 -179693140 + AT_rich Low_complexity Low_complexity 1 22 0 274 163 117 179 chr3 47831444 47831640 -179692938 + L1ME LINE L1 5488 5671 -450 390 306 12 24 chr3 47832116 47832286 -179692292 + MER69A DNA AcHobo 1 168 -9 1085 148 50 16 chr3 47833415 47833597 -179690981 + MLT1A1 LTR MaLR 178 365 0 450 262 0 47 chr3 47833601 47833708 -179690870 - L2 LINE L2 -24 3289 3188 1561 208 68 36 chr3 47833787 47834230 -179690348 - LTR16A1 LTR ERVL 0 457 1 2130 103 0 36 chr3 47834425 47834726 -179689852 + AluSx SINE Alu 13 302 -10 35 0 0 0 chr3 47834767 47834802 -179689776 + AT_rich Low_complexity Low_complexity 1 35 0 1185 239 118 17 chr3 47835377 47835653 -179688925 + MER110A LTR ERV1 22 353 -115 2016 144 0 0 chr3 47835653 47835952 -179688626 - AluSx SINE Alu -13 299 1 1185 239 118 17 chr3 47835952 47836081 -179688497 + MER110A LTR ERV1 353 468 0 326 301 49 35 chr3 47836286 47836429 -179688149 + L1M4 LINE L1 2430 2574 -3572 1041 77 0 94 chr3 47836432 47836474 -179688104 + MER41A LTR ERV1 400 444 -110 2491 62 0 16 chr3 47836474 47836783 -179687795 - AluY SINE Alu -1 310 7 1041 77 0 94 chr3 47836783 47836910 -179687668 + MER41A LTR ERV1 444 553 -1 4380 111 11 26 chr3 47836911 47837104 -179687474 + MER41A-int LTR ERV1 1 195 -5751 1812 154 18 3 chr3 47837104 47837390 -179687188 - AluSx SINE Alu -20 292 3 4380 111 11 26 chr3 47837390 47837844 -179686734 + MER41A-int LTR ERV1 195 638 -5308 4162 133 46 9 chr3 47837833 47838095 -179686483 + MER41A-int LTR ERV1 1080 1331 -4615 * 207 0 0 0 chr3 47838095 47838118 -179686460 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4162 133 46 9 chr3 47838118 47838526 -179686052 + MER41A-int LTR ERV1 1331 1775 -4171 575 157 0 0 chr3 47838510 47838599 -179685979 + MER41A-int LTR ERV1 1950 2038 -4225 * 6478 33 0 0 chr3 47838607 47839365 -179685213 - L1PA5 LINE L1 -1310 4836 4079 7837 28 11 1 chr3 47839365 47840670 -179683908 + L1PA5 LINE L1 4832 6145 -9 25593 100 32 40 chr3 47840701 47843291 -179681287 + MER41B-int LTR ERV1 500 3108 -2838 1885 160 3 0 chr3 47843291 47843578 -179681000 + AluSx SINE Alu 1 288 -24 25593 100 32 40 chr3 47843578 47845014 -179679564 + MER41B-int LTR ERV1 3108 5946 0 3839 124 2 2 chr3 47845014 47845568 -179679010 + MER41B LTR ERV1 1 554 -81 1966 160 0 3 chr3 47845643 47845950 -179678628 + AluJb SINE Alu 1 306 -6 327 278 52 23 chr3 47845982 47846155 -179678423 + L2 LINE L2 1986 2163 -1151 1291 161 103 42 chr3 47846155 47846256 -179678322 - MER2 DNA MER2_type 0 345 252 2374 105 0 9 chr3 47846256 47846571 -179678007 + AluSx SINE Alu 1 312 0 1291 161 103 42 chr3 47846571 47846780 -179677798 - MER2 DNA MER2_type -93 252 16 2141 252 87 5 chr3 47846786 47847381 -179677197 + L2 LINE L2 2173 2816 -498 776 272 13 85 chr3 47847438 47847743 -179676835 + L2 LINE L2 3025 3307 -6 737 259 46 50 chr3 47848460 47848523 -179676055 - L1ME3A LINE L1 -6 6164 6102 1442 228 35 38 chr3 47848523 47848892 -179675686 + MLT1A2 LTR MaLR 3 370 -4 737 259 46 50 chr3 47848892 47849087 -179675491 - L1ME3A LINE L1 -68 6102 5907 1777 129 6 79 chr3 47849398 47849716 -179674862 - AluJb SINE Alu -17 295 1 811 285 170 2 chr3 47849831 47850242 -179674336 + LTR33 LTR ERVL 22 501 -20 29 28 0 0 chr3 47850258 47850294 -179674284 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr3 47850322 47850342 -179674236 + (CA)n Simple_repeat Simple_repeat 2 21 0 854 284 54 38 chr3 47850622 47851066 -179673512 + L1M4 LINE L1 3580 4030 -2116 492 257 172 32 chr3 47851223 47851561 -179673017 - L1MC4a LINE L1 -1770 6038 5654 1162 220 96 86 chr3 47851740 47852168 -179672410 + MER77 LTR ERV1 154 585 -20 340 342 17 0 chr3 47852256 47852373 -179672205 - L1MC4a LINE L1 -2159 5649 5531 202 330 160 0 chr3 47852431 47852537 -179672041 - L2 LINE L2 -2881 433 311 499 294 175 15 chr3 47852631 47852900 -179671678 + Charlie2 DNA MER1_type 2 313 -2549 890 206 10 5 chr3 47852964 47853158 -179671420 + Charlie2a DNA MER1_type 1469 1663 -1199 363 167 71 0 chr3 47853175 47853259 -179671319 + Charlie2a DNA MER1_type 2728 2817 -45 2110 115 13 7 chr3 47853487 47853791 -179670787 + AluSx SINE Alu 1 306 -6 213 331 8 24 chr3 47853845 47853972 -179670606 + CT-rich Low_complexity Low_complexity 3 127 0 23 33 0 0 chr3 47855600 47855630 -179668948 + AT_rich Low_complexity Low_complexity 1 30 0 680 275 105 3 chr3 47856045 47856340 -179668238 - HAL1 LINE L1 -14 2493 2169 328 47 0 0 chr3 47856863 47856906 -179667672 - L1PA6 LINE L1 -3 6151 6109 568 254 47 6 chr3 47857260 47857429 -179667149 + MIR SINE MIR 86 261 -1 330 235 151 103 chr3 47857481 47857792 -179666786 - HAL1 LINE L1 -948 1559 1234 2287 62 0 4 chr3 47858352 47858626 -179665952 - AluY SINE Alu -13 298 26 328 284 37 0 chr3 47858664 47858745 -179665833 - L2 LINE L2 -38 3275 3192 757 259 26 80 chr3 47858842 47859193 -179665385 - MLT1I LTR MaLR -7 402 71 883 204 10 53 chr3 47859383 47859589 -179664989 - MIR SINE MIR -11 251 55 246 224 0 0 chr3 47860258 47860307 -179664271 + L1ME3A LINE L1 5896 5944 -226 14136 212 26 28 chr3 47860308 47862356 -179662222 + L1P4 LINE L1 1858 3898 -2268 1853 120 73 54 chr3 47862356 47862724 -179661854 - THE1C LTR MaLR 0 375 1 14136 212 26 28 chr3 47862724 47864510 -179660068 + L1P4 LINE L1 3898 5685 -481 426 306 92 17 chr3 47864513 47864859 -179659719 + L1MEc LINE L1 1275 1701 -875 263 278 123 21 chr3 47864860 47864905 -179659673 - MLT2F LTR ERVL 0 663 624 324 0 0 0 chr3 47864905 47864941 -179659637 + (GA)n Simple_repeat Simple_repeat 1 36 0 263 278 123 21 chr3 47864941 47865082 -179659496 - MLT2F LTR ERVL -39 624 458 280 143 79 32 chr3 47865137 47865200 -179659378 - MLT1E3 LTR MaLR -509 115 50 565 250 0 8 chr3 47865203 47865327 -179659251 - MLT2F LTR ERVL -519 144 22 326 179 211 11 chr3 47865325 47865420 -179659158 - LTR33 LTR ERVL -373 148 35 * 314 314 27 18 chr3 47865427 47865675 -179658903 + L1MEc LINE L1 2394 2643 -3572 1041 177 37 31 chr3 47865783 47866070 -179658508 + L1ME1 LINE L1 5725 6051 -115 997 179 23 69 chr3 47866071 47866289 -179658289 + AluJb SINE Alu 85 292 -20 437 204 54 63 chr3 47866320 47866467 -179658111 + L1MC4 LINE L1 6041 6146 -20 496 298 31 37 chr3 47866614 47866663 -179657915 + L1MEc LINE L1 2912 2960 -3255 2099 128 3 10 chr3 47866663 47866969 -179657609 + AluSq SINE Alu 1 304 -9 496 298 31 37 chr3 47866969 47867272 -179657306 + L1MEc LINE L1 2960 3262 -2953 24 53 0 0 chr3 47867698 47867736 -179656842 + AT_rich Low_complexity Low_complexity 1 38 0 311 235 105 62 chr3 47867737 47867995 -179656583 + L1ME2 LINE L1 5698 5966 -198 1216 235 64 0 chr3 47868135 47868433 -179656145 + Charlie4a DNA MER1_type 4 320 -188 515 15 0 15 chr3 47868433 47868498 -179656080 + (TA)n Simple_repeat Simple_repeat 2 65 0 21 0 0 0 chr3 47868792 47868813 -179655765 + GC_rich Low_complexity Low_complexity 1 21 0 804 145 30 0 chr3 47868915 47869046 -179655532 + AluJb SINE Alu 159 293 -19 288 0 0 0 chr3 47869870 47869902 -179654676 + (CTG)n Simple_repeat Simple_repeat 2 33 0 2445 73 0 0 chr3 47870214 47870516 -179654062 - AluY SINE Alu -9 302 1 1860 138 47 0 chr3 47870753 47871049 -179653529 - AluSg SINE Alu 0 310 1 2109 121 3 3 chr3 47871049 47871346 -179653232 - AluSx SINE Alu -15 297 1 761 191 258 47 chr3 47871400 47871698 -179652880 + MER46B DNA MER2_type 1 236 0 1853 136 42 0 chr3 47871814 47872100 -179652478 - AluSx SINE Alu -14 298 1 221 291 128 0 chr3 47872758 47872844 -179651734 + MIR SINE MIR 40 136 -126 305 311 117 18 chr3 47873230 47873503 -179651075 - L2 LINE L2 -1722 1592 1293 2199 100 3 0 chr3 47873749 47874038 -179650540 + AluSx SINE Alu 1 290 -22 860 107 74 0 chr3 47874238 47874360 -179650218 + AluSg SINE Alu 1 131 -179 250 274 131 0 chr3 47874452 47874536 -179650042 + MIR SINE MIR 127 221 -41 193 279 49 33 chr3 47874547 47874608 -179649970 + L2 LINE L2 3203 3264 -8 1965 220 43 25 chr3 47875062 47875515 -179649063 - MLT2B2 LTR ERVL -6 548 15 416 254 104 115 chr3 47875515 47875662 -179648916 - L1MC4a LINE L1 -1960 5848 5701 1818 107 13 88 chr3 47875662 47875980 -179648598 - AluSg SINE Alu -16 294 1 416 254 104 115 chr3 47875980 47876276 -179648302 - L1MC4a LINE L1 -2107 5701 5410 428 216 114 51 chr3 47876393 47876569 -179648009 - L1MC4a LINE L1 -1485 4661 4475 2255 74 0 74 chr3 47876621 47876944 -179647634 - AluY SINE Alu -12 299 1 1883 136 21 0 chr3 47876948 47877227 -179647351 - AluSx SINE Alu -21 291 7 1412 42 0 6 chr3 47877271 47877439 -179647139 - AluY SINE Alu -12 299 133 2153 112 3 0 chr3 47877439 47877725 -179646853 - AluSx SINE Alu -25 287 1 1863 156 3 37 chr3 47877858 47878045 -179646533 - AluJo SINE Alu -2 310 137 2061 111 0 63 chr3 47878045 47878377 -179646201 - AluSq SINE Alu -2 311 1 1863 156 3 37 chr3 47878377 47878510 -179646068 - AluJo SINE Alu -175 137 1 26 0 0 0 chr3 47878996 47879022 -179645556 + AT_rich Low_complexity Low_complexity 1 26 0 3075 128 35 48 chr3 47879036 47879160 -179645418 - L1MA9 LINE L1 -256 6056 5932 2068 106 0 18 chr3 47879160 47879444 -179645134 - AluSc SINE Alu -30 279 1 3075 128 35 48 chr3 47879444 47879897 -179644681 - L1MA9 LINE L1 -380 5932 5487 573 15 0 0 chr3 47879899 47879965 -179644613 + (TTATG)n Simple_repeat Simple_repeat 2 67 0 1661 121 12 12 chr3 47879965 47880222 -179644356 - AluSx SINE Alu -20 292 36 213 344 32 64 chr3 47980261 47980572 -179544006 - L3 LINE CR1 -652 925 625 1352 334 56 20 chr3 47981813 47982852 -179541726 - L2 LINE L2 -195 3077 1943 216 239 43 0 chr3 47983173 47983219 -179541359 + MER5A DNA MER1_type 3 50 -139 1003 162 52 48 chr3 47983220 47983449 -179541129 + MLT1E1 LTR MaLR 1 230 -424 467 237 197 0 chr3 47983604 47983756 -179540822 + MLT1E1 LTR MaLR 473 654 0 669 180 65 36 chr3 47983756 47983895 -179540683 + MER5A DNA MER1_type 47 189 0 184 246 198 16 chr3 47983979 47984105 -179540473 - MIR SINE MIR -1 261 113 2153 38 0 11 chr3 47984575 47984839 -179539739 + L1PA8 LINE L1 5912 6172 0 397 319 93 48 chr3 47985415 47985791 -179538787 + L1MEd LINE L1 1 393 -5726 671 216 52 0 chr3 47985813 47985966 -179538612 + MER3 DNA MER1_type 49 209 0 6233 157 20 5 chr3 47986487 47987797 -179536781 + L1MC1 LINE L1 5004 6332 -1 405 180 135 0 chr3 47987960 47988049 -179536529 + L1MC1 LINE L1 6231 6331 -2 * 4703 162 26 53 chr3 47988045 47989318 -179535260 + L1MD2 LINE L1 4981 6224 -18 253 349 66 0 chr3 47989353 47989459 -179535119 - L1MC4a LINE L1 -1220 6588 6476 6998 174 20 6 chr3 47989920 47992237 -179532341 + L1PA16 LINE L1 3820 6158 -8 608 279 62 4 chr3 47992377 47992603 -179531975 - L1MC4a LINE L1 -1987 5821 5583 287 275 7 4 chr3 47993226 47993312 -179531266 + MIR SINE MIR 61 146 -62 661 244 140 6 chr3 47994153 47994317 -179530261 + MER5A DNA MER1_type 4 189 0 324 301 22 15 chr3 47994433 47994569 -179530009 - L1ME4a LINE L1 -35 6086 5950 180 301 82 0 chr3 47994607 47994680 -179529898 - L2 LINE L2 -62 3251 3173 647 211 180 0 chr3 47994871 47995032 -179529546 - MIR SINE MIR -5 257 68 295 240 0 13 chr3 47995400 47995475 -179529103 + L2 LINE L2 2994 3067 -205 343 350 0 8 chr3 47995502 47995622 -179528956 + MIR SINE MIR 64 182 -80 209 344 108 11 chr3 47995711 47995804 -179528774 + L2 LINE L2 3122 3223 -49 297 0 0 0 chr3 47996280 47996313 -179528265 + (TG)n Simple_repeat Simple_repeat 2 34 0 222 329 41 0 chr3 47997394 47997467 -179527111 - L2 LINE L2 -23 3249 3174 210 217 87 0 chr3 47997719 47997765 -179526813 - L2 LINE L2 0 3272 3223 378 295 93 7 chr3 47998376 47998515 -179526063 + MIR SINE MIR 47 197 -65 25 0 0 0 chr3 47998617 47998642 -179525936 + AT_rich Low_complexity Low_complexity 1 25 0 763 345 162 11 chr3 47998690 47999425 -179525153 - L1M4 LINE L1 -1329 4817 3931 1992 75 8 0 chr3 47999425 47999677 -179524901 - AluY SINE Alu -16 295 42 763 345 162 11 chr3 47999677 47999807 -179524771 - L1M4 LINE L1 -2215 3931 3822 249 351 94 48 chr3 48000464 48000877 -179523701 + L2 LINE L2 2286 2717 -597 383 283 45 21 chr3 48000916 48001188 -179523390 + MER46C DNA MER2_type 2 332 -6 563 269 91 29 chr3 48001203 48001391 -179523187 - HAL1 LINE L1 -92 2415 2240 2333 126 23 18 chr3 48001391 48001779 -179522799 - MLT1B LTR MaLR 0 390 1 563 269 91 29 chr3 48001779 48002006 -179522572 - HAL1 LINE L1 -267 2240 1974 992 272 148 2 chr3 48002140 48002709 -179521869 - HAL1 LINE L1 -725 1782 1131 535 312 69 87 chr3 48002743 48003281 -179521297 - HAL1 LINE L1 -1575 932 405 283 277 117 7 chr3 48003828 48003965 -179520613 + L2 LINE L2 3160 3311 -2 666 278 37 27 chr3 48003989 48004280 -179520298 - LTR16A1 LTR ERVL -2 455 162 446 223 10 10 chr3 48004280 48004383 -179520195 - MER81 DNA DNA -2 112 10 2410 148 80 23 chr3 48004481 48004551 -179520027 + MLT1D LTR MaLR 1 66 -439 1613 161 0 4 chr3 48004551 48004799 -179519779 + AluJb SINE Alu 58 304 -8 2410 148 80 23 chr3 48004799 48005168 -179519410 + MLT1D LTR MaLR 66 472 -33 2320 108 0 0 chr3 48005168 48005474 -179519104 + AluSx SINE Alu 1 306 -6 2410 148 80 23 chr3 48005474 48005511 -179519067 + MLT1D LTR MaLR 472 505 0 609 246 118 23 chr3 48005731 48005951 -179518627 + MIR SINE MIR 5 245 -17 423 267 107 20 chr3 48008074 48008224 -179516354 + MIR SINE MIR 51 213 -49 24 53 0 0 chr3 48008650 48008688 -179515890 + AT_rich Low_complexity Low_complexity 1 38 0 1263 167 47 18 chr3 48008700 48009042 -179515536 - MER3 DNA MER1_type 0 2585 2234 388 136 11 57 chr3 48009044 48009132 -179515446 - MER3 DNA MER1_type -46 163 87 643 243 243 3 chr3 48009139 48009505 -179515073 - Charlie7 DNA MER1_type -2115 497 44 2003 147 0 13 chr3 48009719 48010026 -179514552 - AluJo SINE Alu -9 303 1 240 169 0 42 chr3 48011728 48011799 -179512779 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 486 213 71 24 chr3 48011960 48012087 -179512491 + LTR50 LTR ERVL 26 158 -637 357 235 125 20 chr3 48012341 48012553 -179512025 + LTR33A LTR ERVL 330 523 0 210 321 85 9 chr3 48013166 48013211 -179511367 - MIR SINE MIR -63 199 159 2013 179 11 9 chr3 48013211 48013558 -179511020 - MER7A DNA MER2_type 0 346 1 210 321 85 9 chr3 48013558 48013618 -179510960 - MIR SINE MIR -103 159 86 523 252 0 10 chr3 48015702 48015805 -179508773 - MER81 DNA DNA 0 114 13 2209 190 57 2 chr3 48015805 48016211 -179508367 + MSTC LTR MaLR 1 428 0 5316 215 59 45 chr3 48016213 48017503 -179507075 + MSTC-int LTR MaLR 2 1309 -426 6748 197 20 31 chr3 48018113 48020897 -179503681 - L1MC1 LINE L1 -6 6607 3867 2690 82 40 8 chr3 48020897 48021275 -179503303 + MLT2A1 LTR ERVL 1 390 -54 2740 84 3 11 chr3 48021275 48021634 -179502944 + L1PB1 LINE L1 5795 6150 -1 10810 171 91 26 chr3 48021745 48022167 -179502411 - L1MC1 LINE L1 -3147 3279 2886 2219 120 0 0 chr3 48022167 48022467 -179502111 - AluSc SINE Alu -9 300 1 10810 171 91 26 chr3 48022467 48024213 -179500365 - L1MC1 LINE L1 -3540 2886 851 1054 132 76 30 chr3 48024213 48024410 -179500168 + L1PA16 LINE L1 5957 6162 -4 10810 171 91 26 chr3 48024410 48025301 -179499277 - L1MC1 LINE L1 -5575 851 19 1940 61 0 20 chr3 48027235 48027481 -179497097 - AluY SINE Alu 0 311 71 1035 158 9 25 chr3 48027491 48027805 -179496773 - L1MA4A LINE L1 -23 6280 5911 478 235 16 3 chr3 48027804 48027930 -179496648 - L1ME3A LINE L1 -45 6117 5987 * 545 266 52 31 chr3 48027971 48028200 -179496378 - MIR SINE MIR -21 241 8 1978 145 17 0 chr3 48028258 48028554 -179496024 + AluJb SINE Alu 9 309 -3 247 198 45 99 chr3 48029173 48029284 -179495294 + MIR SINE MIR 20 124 -84 376 244 0 0 chr3 48029741 48029827 -179494751 - MER3 DNA MER1_type 0 209 124 505 293 106 44 chr3 48029836 48030310 -179494268 + L2 LINE L2 2804 3306 -7 278 225 171 0 chr3 48030317 48030428 -179494150 + MER113 DNA MER1_type? 6 135 -386 323 332 10 42 chr3 48031521 48031714 -179492864 + L2 LINE L2 2895 3081 -191 470 292 26 0 chr3 48031934 48032047 -179492531 + L2 LINE L2 3155 3270 -2 790 316 67 21 chr3 48032591 48033455 -179491123 + L1M4 LINE L1 2918 3821 -2325 252 304 11 11 chr3 48034333 48034425 -179490153 + GA-rich Low_complexity Low_complexity 1 92 0 218 310 30 20 chr3 48034936 48035036 -179489542 - L3 LINE CR1 -46 1531 1431 285 260 36 50 chr3 48035116 48035270 -179489308 - L1M2 LINE L1 -823 5468 5317 4195 149 24 9 chr3 48035788 48036488 -179488090 + MER50 LTR ERV1 1 711 -23 243 321 45 18 chr3 48036529 48036641 -179487937 - L3 LINE CR1 -171 1406 1292 1258 225 192 21 chr3 48037759 48038186 -179486392 + LTR33 LTR ERVL 1 500 -21 210 370 14 68 chr3 48038831 48038935 -179485643 + L2 LINE L2 2593 2688 -626 2183 86 0 4 chr3 48038935 48039214 -179485364 - AluSg SINE Alu -5 305 28 210 370 14 68 chr3 48039214 48039255 -179485323 + L2 LINE L2 2688 2730 -584 39 38 0 0 chr3 48039592 48039645 -179484933 + AT_rich Low_complexity Low_complexity 1 53 0 495 209 32 44 chr3 48039645 48039803 -179484775 - Charlie5 DNA MER1_type -2446 166 11 1545 247 114 13 chr3 48040819 48041292 -179483286 - L1ME3 LINE L1 -85 6077 5557 1453 249 66 68 chr3 48041656 48042246 -179482332 + L1MC4a LINE L1 5407 5995 -1813 1051 265 112 31 chr3 48042991 48043383 -179481195 - LTR16A1 LTR ERVL -22 435 12 4994 130 7 7 chr3 48043546 48044310 -179480268 - L1PB3 LINE L1 -1 6153 5390 * 17058 186 56 10 chr3 48044304 48048923 -179475655 - L1PBa LINE L1 -2022 4840 1 4431 190 32 34 chr3 48048930 48049656 -179474922 - L1 LINE L1 -2841 3305 2579 1479 53 37 11 chr3 48049656 48049846 -179474732 + L1PA5 LINE L1 5957 6151 -3 4431 190 32 34 chr3 48049846 48050108 -179474470 - L1 LINE L1 -3567 2579 2317 2630 143 41 17 chr3 48050108 48050526 -179474052 - MSTA LTR MaLR 0 428 1 4431 190 32 34 chr3 48050526 48050614 -179473964 - L1 LINE L1 -3829 2317 2230 767 137 341 0 chr3 48050620 48050802 -179473776 + L1PBa LINE L1 2671 2914 -3949 832 242 102 22 chr3 48050802 48051215 -179473363 - L1MC5 LINE L1 -178 7783 7338 347 286 71 0 chr3 48051216 48051342 -179473236 - L1MC4a LINE L1 -1119 6689 6555 21 0 0 0 chr3 48051362 48051383 -179473195 + AT_rich Low_complexity Low_complexity 1 21 0 853 273 138 15 chr3 48051677 48052083 -179472495 + Charlie2a DNA MER1_type 28 483 -2299 1879 223 32 32 chr3 48052114 48052639 -179471939 + Charlie2a DNA MER1_type 568 1092 -1770 1890 217 65 25 chr3 48052643 48053247 -179471331 + Charlie2a DNA MER1_type 2233 2860 -2 22 0 0 0 chr3 48053390 48053412 -179471166 + AT_rich Low_complexity Low_complexity 1 22 0 1406 228 34 51 chr3 48053422 48053918 -179470660 - MLT1H LTR MaLR -3 546 1 193 341 11 11 chr3 48053922 48054013 -179470565 - MIR SINE MIR -1 261 171 1519 210 4 0 chr3 48054982 48055254 -179469324 - LTR16C LTR ERVL -13 478 206 529 237 124 102 chr3 48056068 48056511 -179468067 - MLT1J LTR MaLR -41 470 18 725 240 62 44 chr3 48057162 48057387 -179467191 + MIR SINE MIR 34 262 0 499 222 104 78 chr3 48059063 48059293 -179465285 - MER106A DNA MER1_type 0 236 1 2260 125 0 0 chr3 48059342 48059654 -179464924 - AluSx SINE Alu 0 312 1 524 264 31 16 chr3 48059832 48059961 -179464617 + MIR SINE MIR 18 148 -114 385 253 12 0 chr3 48060415 48060498 -179464080 + L2 LINE L2 3230 3313 0 982 265 39 36 chr3 48061604 48061992 -179462586 + LTR16A1 LTR ERVL 72 457 0 1001 305 68 12 chr3 48062315 48062725 -179461853 + LTR16C LTR ERVL 58 490 -1 267 239 141 0 chr3 48063759 48063830 -179460748 - MER96 DNA MER1_type? 0 175 95 * 398 190 347 8 chr3 48063767 48063888 -179460690 + MER96 DNA MER1_type? 14 175 0 306 87 0 0 chr3 48063906 48063952 -179460626 + (GA)n Simple_repeat Simple_repeat 1 46 0 502 277 54 0 chr3 48064000 48064148 -179460430 - MIR SINE MIR -12 250 95 2470 75 3 0 chr3 48067003 48067310 -179457268 + AluY SINE Alu 1 308 -3 444 288 98 60 chr3 48067438 48067991 -179456587 + HAL1 LINE L1 1140 1713 -794 1647 194 31 31 chr3 48068346 48068708 -179455870 + MLT1A1 LTR MaLR 1 365 0 550 260 55 28 chr3 48069165 48069346 -179455232 + MIR SINE MIR 71 256 -6 227 267 0 0 chr3 48069502 48069562 -179455016 + L1MC4 LINE L1 6644 6703 -1339 206 223 149 11 chr3 48070383 48070477 -179454101 + L2 LINE L2 2292 2398 -916 278 243 29 0 chr3 48070605 48070675 -179453903 + L2 LINE L2 3239 3310 -3 614 249 157 36 chr3 48070789 48071070 -179453508 + LTR16A1 LTR ERVL 55 369 -88 228 211 140 0 chr3 48071169 48071226 -179453352 - MIR3 SINE MIR -29 179 115 2651 104 0 46 chr3 48071733 48071899 -179452679 + THE1C LTR MaLR 1 173 -202 2416 75 7 0 chr3 48071899 48072192 -179452386 - AluY SINE Alu -14 297 3 2651 104 0 46 chr3 48072192 48072418 -179452160 + THE1C LTR MaLR 173 375 0 1734 201 60 33 chr3 48072482 48072935 -179451643 + MLT1C LTR MaLR 1 465 -2 262 291 89 20 chr3 48073156 48073292 -179451286 + MIR SINE MIR 12 153 -55 3306 203 56 13 chr3 48073734 48074501 -179450077 + L1MA2 LINE L1 2163 2962 -3184 * 6073 32 0 0 chr3 48074497 48075212 -179449366 - L1PA2 LINE L1 -971 5175 4461 7910 19 1 0 chr3 48075212 48076201 -179448377 + L1PA2 LINE L1 5164 6153 -2 7768 158 38 54 chr3 48076203 48079848 -179444730 + L1MA2 LINE L1 2947 6304 0 26 30 0 0 chr3 48079848 48079881 -179444697 + AT_rich Low_complexity Low_complexity 1 33 0 1179 252 47 68 chr3 48080050 48080566 -179444012 + MLT1J LTR MaLR 5 509 -2 368 250 50 0 chr3 48080771 48080891 -179443687 + L1MC4a LINE L1 5719 5844 -1964 27 0 0 0 chr3 48081968 48081995 -179442583 + AT_rich Low_complexity Low_complexity 1 27 0 506 248 0 24 chr3 48082724 48082849 -179441729 - LTR67 LTR ERVL -9 548 427 1013 301 45 43 chr3 48083548 48083967 -179440611 - MLT1K LTR MaLR -43 545 126 182 283 35 62 chr3 48084729 48084842 -179439736 - MIR SINE MIR -82 126 17 477 285 95 11 chr3 48084951 48085130 -179439448 + LTR16C LTR ERVL 101 294 -197 889 162 17 23 chr3 48085130 48085303 -179439275 + MER5A DNA MER1_type 14 185 -4 444 317 68 0 chr3 48085333 48085494 -179439084 + LTR16C LTR ERVL 312 483 -8 294 273 13 0 chr3 48086574 48086651 -179437927 + (CATATA)n Simple_repeat Simple_repeat 3 80 0 207 319 44 11 chr3 48086689 48086780 -179437798 + MIR SINE MIR 161 254 -8 224 0 0 61 chr3 48087304 48087320 -179437258 + (CAA)n Simple_repeat Simple_repeat 1 16 -15 2288 58 40 0 chr3 48087320 48087594 -179436984 + AluY SINE Alu 2 286 -25 224 0 0 61 chr3 48087594 48087610 -179436968 + (CAA)n Simple_repeat Simple_repeat 16 31 0 1982 127 32 7 chr3 48087839 48088123 -179436455 + AluSx SINE Alu 1 291 -21 785 233 28 16 chr3 48088685 48088924 -179435654 - L1MB8 LINE L1 -1 6177 5938 375 331 24 12 chr3 48089171 48089337 -179435241 - MIR SINE MIR -93 169 2 324 0 0 0 chr3 48090728 48090764 -179433814 + (TG)n Simple_repeat Simple_repeat 1 36 0 300 284 16 38 chr3 48090807 48090990 -179433588 + (CAGAGA)n Simple_repeat Simple_repeat 2 180 0 953 221 83 39 chr3 48091035 48091420 -179433158 + L1MC5 LINE L1 7521 7922 -39 2590 204 36 0 chr3 48092453 48092954 -179431624 - MLT2B1 LTR ERVL -1 519 1 23 33 0 0 chr3 48093813 48093843 -179430735 + AT_rich Low_complexity Low_complexity 1 30 0 429 308 48 0 chr3 48093843 48093989 -179430589 - MIR SINE MIR -1 261 109 207 277 72 12 chr3 48094744 48094827 -179429751 + MER5A DNA MER1_type 102 189 0 764 204 23 11 chr3 48094833 48095009 -179429569 - MER5B DNA MER1_type 0 178 1 243 88 0 0 chr3 48095877 48095911 -179428667 + (T)n Simple_repeat Simple_repeat 1 34 0 390 42 0 0 chr3 48097585 48097633 -179426945 + (ATG)n Simple_repeat Simple_repeat 3 50 0 230 278 174 17 chr3 48097990 48098105 -179426473 + MIR3 SINE MIR 62 194 -14 553 259 114 6 chr3 48099807 48099965 -179424613 + LTR16A1 LTR ERVL 280 454 -3 2210 101 7 17 chr3 48100331 48100628 -179423950 - AluSc SINE Alu -15 294 1 228 253 13 53 chr3 48100657 48100732 -179423846 + CT-rich Low_complexity Low_complexity 4 75 0 352 158 0 0 chr3 48101170 48101227 -179423351 - MLT1E3 LTR MaLR 0 624 568 525 127 13 0 chr3 48101228 48101307 -179423271 + MADE1 DNA Mariner 1 80 0 * 1123 205 76 115 chr3 48101307 48101739 -179422839 - MLT1E3 LTR MaLR -55 569 155 404 154 0 39 chr3 48101889 48101967 -179422611 - Charlie3 DNA MER1_type -2635 75 1 6718 186 60 10 chr3 48101969 48103210 -179421368 + MSTB-int LTR MaLR 348 1651 0 2354 158 69 8 chr3 48103220 48103613 -179420965 + MSTB LTR MaLR 6 422 -4 388 307 31 25 chr3 48103654 48103817 -179420761 - L3 LINE CR1 -140 1437 1274 2178 183 107 13 chr3 48104554 48105014 -179419564 + MLT1D LTR MaLR 3 505 0 261 194 60 0 chr3 48105081 48105148 -179419430 - LTR16C LTR ERVL 0 491 421 650 291 172 4 chr3 48105196 48105457 -179419121 - LTR16C LTR ERVL -150 341 37 2323 92 7 0 chr3 48105620 48105913 -179418665 + AluSc SINE Alu 1 295 -14 405 0 0 0 chr3 48106433 48106478 -179418100 + (CTGGGG)n Simple_repeat Simple_repeat 3 47 0 458 220 220 6 chr3 48107057 48107216 -179417362 - MIR SINE MIR 0 262 70 340 343 28 0 chr3 48107240 48107383 -179417195 + L3 LINE CR1 519 665 -912 231 204 0 0 chr3 48108469 48108523 -179416055 + CT-rich Low_complexity Low_complexity 3 56 0 183 80 0 0 chr3 48108999 48109024 -179415554 + (GA)n Simple_repeat Simple_repeat 1 25 0 696 147 217 13 chr3 48109182 48109339 -179415239 - MER53 DNA DNA 0 189 1 633 272 63 5 chr3 48109351 48109557 -179415021 - LTR33 LTR ERVL 0 521 304 309 346 15 22 chr3 48109607 48109743 -179414835 - LTR33 LTR ERVL -384 137 3 267 31 0 0 chr3 48109921 48109953 -179414625 + (TG)n Simple_repeat Simple_repeat 1 32 0 1439 199 25 31 chr3 48109954 48110262 -179414316 - MLT2D LTR ERVL -90 324 17 1824 153 95 12 chr3 48110262 48110608 -179413970 - THE1C LTR MaLR 0 375 1 1439 199 25 31 chr3 48110608 48110625 -179413953 - MLT2D LTR ERVL -397 17 1 392 314 103 16 chr3 48112067 48112252 -179412326 - L2 LINE L2 -561 2753 2553 666 327 80 10 chr3 48112277 48112690 -179411888 + LTR16B LTR ERVL 23 464 0 510 178 178 0 chr3 48112707 48112814 -179411764 - AluSq/x SINE Alu -187 126 1 798 257 44 5 chr3 48113371 48113535 -179411043 + MIR SINE MIR 33 208 -54 2017 85 0 0 chr3 48113535 48113783 -179410795 + AluY SINE Alu 61 308 -3 798 257 44 5 chr3 48113783 48113824 -179410754 + MIR SINE MIR 208 246 -16 206 318 0 32 chr3 48113840 48113903 -179410675 + MIR3 SINE MIR 105 165 -43 297 271 147 79 chr3 48114000 48114177 -179410401 + L2 LINE L2 3082 3270 -2 645 249 133 21 chr3 48114223 48114456 -179410122 - MIR SINE MIR -2 260 2 1658 173 50 64 chr3 48114512 48114888 -179409690 + MLT1A2 LTR MaLR 4 374 0 260 265 145 0 chr3 48115368 48115451 -179409127 - MIR SINE MIR -60 148 54 471 294 81 74 chr3 48115942 48116374 -179408204 + L1M4 LINE L1 3402 3836 -2310 765 296 48 48 chr3 48116481 48117001 -179407577 + LTR33 LTR ERVL 2 521 0 419 254 171 37 chr3 48117124 48117451 -179407127 + L1M4 LINE L1 2890 3260 -2886 231 263 104 38 chr3 48117511 48117751 -179406827 + L1M4 LINE L1 3371 3626 -2520 13050 136 23 97 chr3 48117980 48119085 -179405493 + Tigger2 DNA MER2_type 89 1274 -1444 7415 36 6 0 chr3 48119085 48120222 -179404356 + L1PA5 LINE L1 5008 6149 -5 13050 136 23 97 chr3 48120222 48121955 -179402623 + Tigger2 DNA MER2_type 1274 2717 -1 5813 204 26 15 chr3 48121979 48124215 -179400363 - L1MB8 LINE L1 -115 6561 4296 4812 227 65 55 chr3 48124286 48124821 -179399757 - L1MB8 LINE L1 -2324 4320 3792 697 200 0 0 chr3 48124821 48124936 -179399642 - FRAM SINE Alu -22 154 40 4812 227 65 55 chr3 48124936 48126945 -179397633 - L1MB8 LINE L1 -2852 3792 1628 3651 256 99 41 chr3 48126964 48127589 -179396989 - L1MB8 LINE L1 -4988 1554 967 2329 106 0 3 chr3 48127589 48127900 -179396678 - AluSg SINE Alu 0 310 1 3651 256 99 41 chr3 48127900 48128304 -179396274 - L1MB8 LINE L1 -5575 967 588 932 139 70 0 chr3 48128304 48128491 -179396087 - L1MA5A LINE L1 -5 6292 6093 3651 256 99 41 chr3 48128491 48128904 -179395674 - L1MB8 LINE L1 -5954 588 27 22 0 0 0 chr3 48129689 48129711 -179394867 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr3 48130173 48130218 -179394360 + AT_rich Low_complexity Low_complexity 1 45 0 21 57 0 0 chr3 48130331 48130366 -179394212 + AT_rich Low_complexity Low_complexity 1 35 0 1770 169 43 46 chr3 48130786 48131177 -179393401 - MLT1B LTR MaLR 0 390 1 22 35 0 0 chr3 48131360 48131389 -179393189 + AT_rich Low_complexity Low_complexity 1 29 0 270 0 0 0 chr3 48131453 48131483 -179393095 + (CA)n Simple_repeat Simple_repeat 2 31 0 377 259 96 39 chr3 48131527 48131963 -179392615 + L1M4 LINE L1 2841 3301 -2845 675 325 45 19 chr3 48132043 48132216 -179392362 - L1ME3A LINE L1 -341 5829 5662 1027 164 57 0 chr3 48132216 48132393 -179392185 + MER5A DNA MER1_type 1 187 -2 675 325 45 19 chr3 48132393 48132747 -179391831 - L1ME3A LINE L1 -508 5662 5291 2510 77 0 3 chr3 48132747 48133059 -179391519 - AluY SINE Alu 0 311 1 675 325 45 19 chr3 48133059 48133071 -179391507 - L1ME3A LINE L1 -879 5291 5281 391 284 40 58 chr3 48133086 48133311 -179391267 - L1ME3A LINE L1 -890 5256 5036 2540 173 9 2 chr3 48134064 48134487 -179390091 + MSTB LTR MaLR 1 426 0 214 268 0 0 chr3 48134538 48134594 -179389984 + A-rich Low_complexity Low_complexity 3 58 0 442 355 85 8 chr3 48134915 48135174 -179389404 - L2 LINE L2 -3 3310 3032 217 286 80 36 chr3 48135612 48135724 -179388854 - L2 LINE L2 -407 2907 2791 914 86 16 8 chr3 48135772 48135900 -179388678 + AluSg/x SINE Alu 115 243 -69 1034 78 8 0 chr3 48135900 48136029 -179388549 - AluSp SINE Alu -183 130 1 239 254 0 0 chr3 48136040 48136103 -179388475 + L1ME LINE L1 5606 5668 -453 231 181 0 96 chr3 48136368 48136462 -179388116 + A-rich Low_complexity Low_complexity 2 86 0 615 296 6 6 chr3 48136468 48136644 -179387934 + L1ME1 LINE L1 5477 5652 -469 259 271 0 0 chr3 48136900 48136970 -179387608 + L1ME1 LINE L1 6043 6112 -54 890 218 104 14 chr3 48136990 48137270 -179387308 - MER63B DNA MER1_type -122 314 10 1023 196 156 50 chr3 48137565 48137923 -179386655 + LTR16A1 LTR ERVL 62 457 0 236 192 58 0 chr3 48138537 48138589 -179385989 - L2 LINE L2 -2 3311 3257 675 291 45 22 chr3 48138592 48138977 -179385601 - LTR16A LTR ERVL 0 457 16 319 208 26 13 chr3 48138999 48139076 -179385502 - L2 LINE L2 -65 3248 3171 242 292 23 31 chr3 48139085 48139215 -179385363 + L1ME4a LINE L1 5987 6115 -6 2307 78 10 3 chr3 48139249 48139543 -179385035 + AluSp SINE Alu 1 296 -17 243 224 342 66 chr3 48139737 48139933 -179384645 + MIR SINE MIR 6 255 -7 610 295 89 19 chr3 48140862 48141336 -179383242 - L1ME4a LINE L1 -23 6098 5592 409 218 20 10 chr3 48141338 48141439 -179383139 + MIR SINE MIR 96 197 -65 180 125 0 0 chr3 48141493 48141525 -179383053 + (CATTC)n Simple_repeat Simple_repeat 1 32 0 197 83 28 0 chr3 48141953 48141989 -179382589 + (CA)n Simple_repeat Simple_repeat 2 38 0 466 273 33 33 chr3 48142732 48142882 -179381696 - MIR SINE MIR -82 180 31 1138 229 85 65 chr3 48143331 48143777 -179380801 - MLT1H LTR MaLR -27 522 68 516 215 190 13 chr3 48143870 48144028 -179380550 - MER5A DNA MER1_type 0 189 4 413 346 0 0 chr3 48145130 48145257 -179379321 - MIR3 SINE MIR -1 207 81 475 346 112 5 chr3 48145725 48145911 -179378667 - MIR SINE MIR -40 222 17 219 370 50 50 chr3 48145911 48146030 -179378548 - MER5A DNA MER1_type 0 189 71 912 217 203 46 chr3 48146141 48146555 -179378023 - MLT1H LTR MaLR -65 484 6 446 276 91 28 chr3 48146753 48147039 -179377539 - HAL1 LINE L1 -9 2498 2195 688 289 17 17 chr3 48147062 48147297 -179377281 - HAL1 LINE L1 -2272 235 1 29 0 0 0 chr3 48147426 48147455 -179377123 + AT_rich Low_complexity Low_complexity 1 29 0 365 235 0 12 chr3 48147465 48147546 -179377032 - L2 LINE L2 -54 3259 3180 217 227 40 0 chr3 48147556 48147631 -179376947 + (TA)n Simple_repeat Simple_repeat 1 78 0 775 290 55 103 chr3 48147636 48148250 -179376328 - HAL1 LINE L1 -1160 1347 763 1698 134 33 7 chr3 48148254 48148583 -179375995 - AluJb SINE Alu 0 336 1 352 273 143 20 chr3 48148927 48149134 -179375444 - MLT1L LTR MaLR 0 588 369 492 287 114 53 chr3 48150269 48150953 -179373625 + L1ME4a LINE L1 5265 6007 -114 1491 174 25 0 chr3 48150953 48151269 -179373309 - MER33 DNA MER1_type 0 324 1 492 287 114 53 chr3 48151269 48151390 -179373188 + L1ME4a LINE L1 6007 6119 -2 182 400 0 0 chr3 48152103 48152163 -179372415 + L2 LINE L2 3227 3286 -27 588 231 45 80 chr3 48152171 48152370 -179372208 - L2 LINE L2 -4 3309 3118 576 198 0 9 chr3 48152371 48152487 -179372091 + L1MB2 LINE L1 5677 5791 -380 1462 196 13 82 chr3 48152520 48152912 -179371666 - MLT1A1 LTR MaLR 0 365 1 7929 200 38 19 chr3 48152914 48154608 -179369970 - MLT1A1-int LTR MaLR -8 1727 1 1841 185 19 14 chr3 48154608 48154971 -179369607 - MLT1A1 LTR MaLR 0 365 1 2186 142 16 3 chr3 48154971 48155345 -179369233 + L1MB2 LINE L1 5792 6170 -1 1040 240 113 16 chr3 48155350 48155817 -179368761 - L2 LINE L2 -191 3122 2619 198 143 0 0 chr3 48155839 48155874 -179368704 + (TAAA)n Simple_repeat Simple_repeat 3 37 0 490 286 53 18 chr3 48155941 48156112 -179368466 + MER77 LTR ERV1 54 230 -375 732 261 44 81 chr3 48156203 48156641 -179367937 + MER77 LTR ERV1 283 672 -4 1116 230 0 5 chr3 48156731 48156948 -179367630 + MER58A DNA MER1_type 1 216 -8 2084 211 56 37 chr3 48157301 48157371 -179367207 + MER119 DNA MER1_type 1 68 -515 1497 145 15 98 chr3 48157371 48157709 -179366869 + AluJb SINE Alu 1 310 -2 2084 211 56 37 chr3 48157709 48158206 -179366372 + MER119 DNA MER1_type 68 579 -4 581 256 46 25 chr3 48159769 48159988 -179364590 + MLT1H LTR MaLR 45 271 -295 1751 167 22 29 chr3 48159993 48160305 -179364273 + AluJo SINE Alu 1 310 -2 378 42 0 0 chr3 48160328 48160376 -179364202 + (CA)n Simple_repeat Simple_repeat 1 48 0 180 0 0 0 chr3 48160375 48160395 -179364183 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 494 224 97 0 chr3 48160418 48160557 -179364021 + MLT1H LTR MaLR 421 549 0 527 289 36 26 chr3 48160557 48160751 -179363827 - MIR SINE MIR -52 210 15 664 282 89 5 chr3 48161019 48161232 -179363346 - MIR SINE MIR -12 250 20 240 35 0 0 chr3 48161839 48161868 -179362710 + (CA)n Simple_repeat Simple_repeat 2 30 0 365 229 48 0 chr3 48163207 48163290 -179361288 + MIR SINE MIR 86 172 -90 2093 131 3 3 chr3 48163565 48163871 -179360707 + AluSx SINE Alu 1 306 -6 343 291 10 0 chr3 48164344 48164447 -179360131 - MIR SINE MIR -63 145 42 1164 223 172 31 chr3 48167407 48167797 -179356781 + LTR16A1 LTR ERVL 1 445 -12 381 235 15 98 chr3 48167981 48168113 -179356465 - LTR33A LTR ERVL -402 121 1 22 35 0 0 chr3 48168809 48168838 -179355740 + AT_rich Low_complexity Low_complexity 1 29 0 305 135 0 0 chr3 48169175 48169227 -179355351 - L2 LINE L2 0 3313 3262 216 274 0 0 chr3 48169342 48169404 -179355174 - L2 LINE L2 0 3313 3252 421 230 44 98 chr3 48169476 48169823 -179354755 + MLT1H LTR MaLR 95 536 -13 376 302 29 50 chr3 48170457 48170566 -179354012 + L1MEd LINE L1 262 369 -5750 2021 155 32 87 chr3 48170566 48171004 -179353574 + MLT2D LTR ERVL 1 414 0 376 302 29 50 chr3 48171004 48171033 -179353545 + L1MEd LINE L1 369 397 -5722 727 321 10 22 chr3 48171123 48171434 -179353144 + L1MEd LINE L1 533 839 -5280 284 188 31 16 chr3 48171437 48171501 -179353077 + MIR SINE MIR 72 136 -126 186 370 0 0 chr3 48171496 48171577 -179353001 + MER5A DNA MER1_type 109 189 0 * 180 111 0 0 chr3 48172683 48172710 -179351868 + (T)n Simple_repeat Simple_repeat 1 27 0 1133 290 74 3 chr3 48173404 48173769 -179350809 + L2 LINE L2 2922 3312 -1 1405 240 84 62 chr3 48174279 48174957 -179349621 - L1ME LINE L1 -715 5447 4742 1776 163 25 4 chr3 48174957 48175234 -179349344 - AluSx SINE Alu -29 283 1 1405 240 84 62 chr3 48175234 48175477 -179349101 - L1ME LINE L1 -1420 4742 4506 1920 270 58 46 chr3 48175557 48176162 -179348416 - L1ME LINE L1 -1776 4370 3773 303 28 0 0 chr3 48176162 48176198 -179348380 + (TG)n Simple_repeat Simple_repeat 1 36 0 1920 270 58 46 chr3 48176198 48176712 -179347866 - L1ME LINE L1 -2373 3773 3233 2028 117 30 27 chr3 48176712 48177011 -179347567 - AluSx SINE Alu -12 300 1 1920 270 58 46 chr3 48177011 48177141 -179347437 - L1ME LINE L1 -2913 3233 3106 334 298 113 26 chr3 48177507 48177658 -179346920 - MLT1K LTR MaLR -423 165 2 240 282 0 13 chr3 48177661 48177739 -179346839 + GA-rich Low_complexity Low_complexity 4 80 0 858 139 58 90 chr3 48177850 48177901 -179346677 + ORSL DNA AcHobo 35 86 -189 2446 66 3 7 chr3 48177901 48178202 -179346376 + AluY SINE Alu 1 300 -11 858 139 58 90 chr3 48178202 48178373 -179346205 + ORSL DNA AcHobo 86 250 -25 1158 245 54 9 chr3 48178418 48178808 -179345770 + LTR16C LTR ERVL 50 491 0 601 175 10 0 chr3 48178813 48178916 -179345662 + MSTA LTR MaLR 2 105 -323 1929 155 59 20 chr3 48178990 48179331 -179345247 + MSTA LTR MaLR 75 428 0 420 255 143 51 chr3 48180168 48180364 -179344214 + MIR SINE MIR 1 214 -48 1808 94 16 4 chr3 48181068 48181312 -179343266 + THE1B LTR MaLR 1 247 -117 983 216 0 6 chr3 48182270 48182446 -179342132 - MER45A DNA AcHobo -3 175 1 226 299 188 0 chr3 48183233 48183350 -179341228 + L2 LINE L2 3134 3272 0 1137 212 141 16 chr3 48183429 48183797 -179340781 - LTR16A1 LTR ERVL 0 457 44 346 294 95 9 chr3 48184192 48184423 -179340155 + L2 LINE L2 2727 2977 -337 246 298 10 39 chr3 48184516 48184620 -179339958 + L2 LINE L2 3158 3258 -55 227 322 59 0 chr3 48184727 48184845 -179339733 - L2 LINE L2 -1004 2310 2186 228 281 146 21 chr3 48187563 48187659 -179336919 + MIR SINE MIR 16 123 -85 444 19 0 0 chr3 48187661 48187714 -179336864 + (TTTA)n Simple_repeat Simple_repeat 4 56 0 528 260 181 37 chr3 48187916 48188270 -179336308 + MLT1H LTR MaLR 132 536 -13 367 322 211 14 chr3 48189537 48190023 -179334555 + L2 LINE L2 2490 3068 -245 625 267 23 0 chr3 48193517 48193689 -179330889 + L1MC5 LINE L1 7268 7443 -518 15708 123 12 37 chr3 48193708 48193882 -179330696 - Tigger1 DNA MER2_type 0 2418 2241 2234 123 0 3 chr3 48193882 48194192 -179330386 + AluSx SINE Alu 1 309 -3 15708 123 12 37 chr3 48194192 48194624 -179329954 - Tigger1 DNA MER2_type -177 2241 1800 2116 128 0 10 chr3 48194624 48194922 -179329656 - AluSg SINE Alu -15 295 1 15708 123 12 37 chr3 48194922 48195075 -179329503 - Tigger1 DNA MER2_type -618 1800 1645 792 170 0 22 chr3 48195075 48195210 -179329368 - FLAM_A SINE Alu 0 133 2 15708 123 12 37 chr3 48195210 48196927 -179327651 - Tigger1 DNA MER2_type -773 1645 1 395 230 162 18 chr3 48196943 48197165 -179327413 + L1MC5 LINE L1 7480 7733 -228 316 231 115 20 chr3 48197166 48197313 -179327265 + L1MC5 LINE L1 7792 8038 -4 3363 148 24 89 chr3 48198018 48198167 -179326411 - LTR8 LTR ERV1 0 691 534 2168 109 0 3 chr3 48198167 48198489 -179326089 + AluSx SINE Alu 1 321 0 3363 148 24 89 chr3 48198489 48199077 -179325501 - LTR8 LTR ERV1 -157 534 1 258 255 38 32 chr3 48200402 48200512 -179324066 + LTR33 LTR ERVL 1 136 -385 302 339 51 28 chr3 48201988 48202242 -179322336 - L1M4 LINE L1 -3598 2548 2289 231 189 0 0 chr3 48204004 48204057 -179320521 + GA-rich Low_complexity Low_complexity 2 54 0 181 295 85 70 chr3 48204946 48205075 -179319503 - L2 LINE L2 0 3272 3142 194 287 201 34 chr3 48205911 48206204 -179318374 + L2 LINE L2 1536 1877 -1437 1726 184 0 17 chr3 48206337 48206636 -179317942 - AluJb SINE Alu -18 294 1 232 283 54 11 chr3 48206774 48206866 -179317712 + L2 LINE L2 3194 3289 -24 514 184 184 20 chr3 48206960 48207112 -179317466 - MER5A DNA MER1_type 0 189 13 1249 261 19 52 chr3 48208381 48208483 -179316095 + MLT1H LTR MaLR 5 109 -440 2248 117 7 3 chr3 48208483 48208792 -179315786 + AluSx SINE Alu 1 310 -2 1249 261 19 52 chr3 48208792 48209111 -179315467 + MLT1H LTR MaLR 109 412 -137 1667 153 41 7 chr3 48210064 48210359 -179314219 - AluJb SINE Alu -7 305 1 337 71 88 35 chr3 48210389 48210559 -179314019 + (TA)n Simple_repeat Simple_repeat 2 180 0 1890 152 0 7 chr3 48210788 48211077 -179313501 - AluSx SINE Alu -25 287 1 454 324 202 0 chr3 48211087 48211359 -179313219 + LTR33 LTR ERVL 126 452 -69 390 216 34 0 chr3 48211359 48211447 -179313131 - MER4E LTR ERV1 0 766 676 3790 158 22 56 chr3 48211504 48212310 -179312268 - MER4E LTR ERV1 0 779 1 21 0 0 0 chr3 48212382 48212403 -179312175 + AT_rich Low_complexity Low_complexity 1 21 0 249 254 16 0 chr3 48212775 48212838 -179311740 + L2 LINE L2 3250 3313 0 837 149 0 57 chr3 48214299 48214440 -179310138 + FLAM_C SINE Alu 1 133 0 527 155 147 0 chr3 48214736 48214852 -179309726 - MER3 DNA MER1_type 0 209 77 1105 295 99 0 chr3 48215718 48216091 -179308487 - LTR16C LTR ERVL -2 489 80 350 317 43 6 chr3 48216456 48216620 -179307958 + MLT1K LTR MaLR 415 584 -4 823 311 53 50 chr3 48217135 48217534 -179307044 + LTR16C LTR ERVL 90 489 -2 4446 80 3 18 chr3 48217637 48218264 -179306314 - L1P LINE L1 -5520 626 9 1361 211 4 4 chr3 48218287 48218538 -179306040 - AluJb SINE Alu -61 251 1 775 237 105 0 chr3 48218543 48218585 -179305993 - L1 LINE L1 -3064 2970 2934 1735 179 36 20 chr3 48218585 48218887 -179305691 - AluJo SINE Alu -5 307 1 775 237 105 0 chr3 48218887 48219063 -179305515 - L1 LINE L1 -3100 2934 2729 1306 265 26 9 chr3 48219078 48219418 -179305160 - L1 LINE L1 -5608 347 2 286 250 62 90 chr3 48220443 48220587 -179303991 + MIR SINE MIR 117 256 -6 6194 130 10 8 chr3 48220840 48221820 -179302758 - L1MA4A LINE L1 -24 6279 5298 227 288 62 0 chr3 48221937 48222017 -179302561 - HAL1 LINE L1 -1089 1418 1334 306 298 81 8 chr3 48222033 48222157 -179302421 - HAL1 LINE L1 -1215 1292 1160 21 0 0 0 chr3 48222286 48222307 -179302271 + AT_rich Low_complexity Low_complexity 1 21 0 6266 152 17 30 chr3 48222425 48223637 -179300941 + L1 LINE L1 4137 5333 -813 * 15582 178 59 4 chr3 48223634 48226948 -179297630 + L1M1 LINE L1 12 3750 -3815 525 71 0 0 chr3 48226948 48227018 -179297560 + (CA)n Simple_repeat Simple_repeat 2 71 0 15582 178 59 4 chr3 48227018 48228479 -179296099 + L1M1 LINE L1 3750 5130 -2435 702 93 0 46 chr3 48228477 48228585 -179295993 - L1MA8 LINE L1 -302 5989 5887 * 1447 176 29 0 chr3 48228585 48228856 -179295722 + L1MA8 LINE L1 6011 6291 0 248 225 163 12 chr3 48228884 48228964 -179295614 - HAL1 LINE L1 -1681 826 735 1996 9 0 0 chr3 48229117 48229330 -179295248 - L1PA2 LINE L1 -3 6152 5940 1317 219 36 7 chr3 48230325 48230626 -179293952 + AluJb SINE Alu 1 310 -2 268 203 60 120 chr3 48230741 48230874 -179293704 - HAL1 LINE L1 -1893 614 490 1414 166 70 75 chr3 48231817 48232167 -179292411 - MLT2C1 LTR ERVL -50 414 1 241 225 14 14 chr3 48233264 48233335 -179291243 - L1ME3A LINE L1 -5 6165 6095 506 248 46 0 chr3 48233422 48233531 -179291047 - MER81 DNA DNA 0 114 1 402 345 31 16 chr3 48234270 48234461 -179290117 + MIR SINE MIR 56 249 -13 23 33 0 0 chr3 48234485 48234515 -179290063 + AT_rich Low_complexity Low_complexity 1 30 0 352 277 43 27 chr3 48234931 48235128 -179289450 + MLT1J1 LTR MaLR 249 446 0 362 269 200 23 chr3 48235210 48235385 -179289193 - L2 LINE L2 -540 2774 2569 201 39 0 0 chr3 48235385 48235411 -179289167 + (GA)n Simple_repeat Simple_repeat 1 26 0 186 210 274 0 chr3 48235747 48235809 -179288769 - L2 LINE L2 -42 3230 3152 19823 29 2 2 chr3 48236206 48239196 -179285382 + L1PA3 LINE L1 3167 6155 0 32 0 0 0 chr3 48239196 48239228 -179285350 + AT_rich Low_complexity Low_complexity 1 32 0 2081 87 47 49 chr3 48240344 48240688 -179283890 - L1MA2 LINE L1 0 6304 5962 386 243 136 0 chr3 48240721 48240861 -179283717 + LTR16C LTR ERVL 299 457 -34 842 219 115 50 chr3 48241300 48241674 -179282904 + MLT1F1 LTR MaLR 207 567 0 321 68 0 0 chr3 48242444 48242488 -179282090 + (GA)n Simple_repeat Simple_repeat 1 44 0 420 238 275 16 chr3 48242643 48242832 -179281746 - MIR SINE MIR -6 256 19 374 285 116 33 chr3 48243155 48243397 -179281181 - MIR SINE MIR 0 262 1 274 208 39 26 chr3 48243856 48243933 -179280645 - MIR SINE MIR -73 135 58 424 31 66 61 chr3 48244955 48245191 -179279387 + (TA)n Simple_repeat Simple_repeat 1 237 0 12717 169 89 56 chr3 48245318 48246384 -179278194 - L1 LINE L1 -1300 5548 4518 2249 105 0 3 chr3 48246384 48246680 -179277898 - AluSq SINE Alu -18 295 1 12717 169 89 56 chr3 48246680 48247252 -179277326 - L1 LINE L1 -2330 4518 3966 1569 176 73 0 chr3 48247252 48247541 -179277037 - AluJb SINE Alu 0 312 3 12717 169 89 56 chr3 48247541 48251272 -179273306 - L1 LINE L1 -2882 3966 7 911 292 49 34 chr3 48251784 48252171 -179272407 - LTR16C LTR ERVL -2 489 97 268 326 111 26 chr3 48252701 48252891 -179271687 + L2 LINE L2 3057 3262 -10 267 287 165 6 chr3 48253965 48254129 -179270449 - MIR SINE MIR -41 221 32 1064 314 201 8 chr3 48254916 48255557 -179269021 + L2 LINE L2 2201 2965 -349 703 236 96 14 chr3 48256682 48256890 -179267688 - MIR SINE MIR -21 241 17 232 284 55 79 chr3 48256958 48257085 -179267493 + L2 LINE L2 3138 3261 -11 375 297 169 5 chr3 48257799 48257994 -179266584 - MIR SINE MIR -13 249 23 854 217 0 0 chr3 48257995 48258156 -179266422 + AluSg/x SINE Alu 132 292 -18 208 232 196 0 chr3 48258696 48258752 -179265826 - MIR SINE MIR -83 125 59 322 269 200 25 chr3 48258902 48259062 -179265516 + MIR SINE MIR 57 244 -18 263 343 36 15 chr3 48259200 48259337 -179265241 + MIR3 SINE MIR 4 143 -65 1464 217 89 32 chr3 48259371 48259808 -179264770 + MLT1C LTR MaLR 6 467 0 198 0 0 0 chr3 48260267 48260289 -179264289 + (A)n Simple_repeat Simple_repeat 1 22 0 2248 95 0 52 chr3 48260355 48260681 -179263897 + AluSc SINE Alu 1 309 0 1913 170 0 0 chr3 48261298 48261610 -179262968 + AluSx SINE Alu 1 312 0 24 0 0 0 chr3 48262064 48262088 -179262490 + AT_rich Low_complexity Low_complexity 1 24 0 610 91 0 23 chr3 48262090 48262178 -179262400 + LTR17 LTR ERV1 454 539 -241 22862 40 29 2 chr3 48262242 48265240 -179259338 + L1P LINE L1 5 3126 -3020 288 293 110 46 chr3 48265529 48265690 -179258888 - MIR3 SINE MIR -68 140 10 371 226 98 29 chr3 48266796 48266898 -179257680 + L2 LINE L2 3165 3273 -40 3577 210 53 44 chr3 48267657 48269266 -179255312 - L1MD2 LINE L1 -10 6626 5009 2889 196 27 51 chr3 48269336 48270069 -179254509 - L1MB8 LINE L1 -233 5945 5248 1968 169 0 3 chr3 48270069 48270382 -179254196 + AluSx SINE Alu 1 312 0 2889 196 27 51 chr3 48270382 48270545 -179254033 - L1MB8 LINE L1 -930 5248 5083 2626 192 42 46 chr3 48270543 48271323 -179253255 - L1MD2 LINE L1 -1501 5039 4263 * 4250 248 96 19 chr3 48271294 48272665 -179251913 - L1MD2 LINE L1 -5046 1494 19 34276 93 15 9 chr3 48272804 48278908 -179245670 - L1PA6 LINE L1 -5 6149 11 2668 156 38 6 chr3 48279087 48279608 -179244970 - L1MA9 LINE L1 -12 6300 5763 22 0 0 0 chr3 48279615 48279637 -179244941 + AT_rich Low_complexity Low_complexity 1 22 0 180 176 12 24 chr3 48279637 48279722 -179244856 + (TTATA)n Simple_repeat Simple_repeat 3 86 0 216 193 18 61 chr3 48279723 48279837 -179244741 + (TATAA)n Simple_repeat Simple_repeat 3 111 0 4858 156 47 7 chr3 48279841 48281299 -179243279 - L1MA9 LINE L1 -537 5775 4260 237 130 222 0 chr3 48281300 48281354 -179243224 - AluJ/FRAM SINE Alu -6 296 231 213 94 0 0 chr3 48281354 48281386 -179243192 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 38177 36 1 2 chr3 48281386 48287036 -179237542 - L1PA3 LINE L1 -13 6142 499 227 219 24 24 chr3 48337709 48337791 -179186787 + (TTTA)n Simple_repeat Simple_repeat 2 83 0 1242 275 46 13 chr3 48338266 48338655 -179185923 - LTR16C LTR ERVL -14 477 76 218 252 193 42 chr3 48338700 48338819 -179185759 - L3 LINE CR1 -153 1424 1288 374 297 108 16 chr3 48338821 48339006 -179185572 - L1M4 LINE L1 -2648 3498 3297 681 226 79 6 chr3 48339013 48339177 -179185401 + MLT1G1 LTR MaLR 3 178 -417 22 35 0 0 chr3 48340034 48340063 -179184515 + AT_rich Low_complexity Low_complexity 1 29 0 183 235 0 0 chr3 48340133 48340184 -179184394 + (TA)n Simple_repeat Simple_repeat 2 52 0 2290 297 160 35 chr3 48340614 48341684 -179182894 - L2 LINE L2 -646 2668 1733 1379 174 27 124 chr3 48341684 48342087 -179182491 + MLT1A1 LTR MaLR 1 364 -1 2290 297 160 35 chr3 48342087 48342715 -179181863 - L2 LINE L2 -1581 1733 758 326 286 60 23 chr3 48343179 48343312 -179181266 + L1MB7 LINE L1 11 148 -6711 1897 153 6 10 chr3 48343413 48343726 -179180852 - AluJo SINE Alu 0 312 1 2663 221 63 15 chr3 48343762 48344491 -179180087 + L1MB7 LINE L1 5358 6121 -836 846 160 70 168 chr3 48344499 48344697 -179179881 - L1M4 LINE L1 -1667 4479 4336 1471 96 25 0 chr3 48344697 48344895 -179179683 + L1PA14 LINE L1 5957 6159 -2 846 160 70 168 chr3 48344895 48345083 -179179495 - L1M4 LINE L1 -1810 4336 4131 * 932 247 33 4 chr3 48345078 48345321 -179179257 + L1MB7 LINE L1 6704 6953 -42 21 57 0 0 chr3 48345327 48345362 -179179216 + AT_rich Low_complexity Low_complexity 1 35 0 529 264 44 6 chr3 48345459 48345618 -179178960 - MIR SINE MIR -48 214 50 466 291 130 52 chr3 48345655 48345950 -179178628 + L1ME LINE L1 2268 2538 -3608 2220 92 0 46 chr3 48345950 48346284 -179178294 - AluSx SINE Alu 0 320 1 466 291 130 52 chr3 48346284 48347190 -179177388 + L1ME LINE L1 2538 3566 -2580 * 471 289 27 44 chr3 48347178 48347252 -179177326 + L1ME LINE L1 5594 5668 -453 2403 92 0 0 chr3 48347252 48347558 -179177020 + AluSc SINE Alu 1 306 -3 471 289 27 44 chr3 48347558 48347592 -179176986 + L1ME LINE L1 5668 5701 -420 1492 135 27 117 chr3 48347592 48347925 -179176653 - AluJo SINE Alu -9 303 1 471 289 27 44 chr3 48347925 48348040 -179176538 + L1ME LINE L1 5701 5814 -307 957 193 148 16 chr3 48348328 48348571 -179176007 + MER2 DNA MER2_type 64 338 -7 980 239 80 14 chr3 48349294 48349583 -179174995 - MLT1H LTR MaLR -15 534 227 1978 127 39 0 chr3 48350605 48350888 -179173690 + AluSx SINE Alu 3 296 -16 332 328 112 16 chr3 48351522 48351827 -179172751 - L2 LINE L2 -1325 1989 1656 * 507 256 31 0 chr3 48351817 48351946 -179172632 + MIR SINE MIR 129 261 -1 564 292 62 95 chr3 48352102 48352376 -179172202 - L2 LINE L2 0 3272 3008 189 307 166 24 chr3 48352934 48353139 -179171439 - L2 LINE L2 -2484 830 597 2179 81 35 39 chr3 48353295 48353605 -179170973 + AluY SINE Alu 1 309 -2 2305 93 3 10 chr3 48354605 48354917 -179169661 - AluSg SINE Alu 0 310 1 497 293 28 84 chr3 48354917 48355336 -179169242 - LTR16A1 LTR ERVL -43 414 18 235 294 0 0 chr3 48356468 48356536 -179168042 + Charlie8 DNA MER1_type 85 152 -2265 498 228 41 8 chr3 48356963 48357085 -179167493 - MIR SINE MIR -27 235 115 2244 125 3 0 chr3 48357367 48357671 -179166907 - AluSx SINE Alu -7 305 1 693 261 100 22 chr3 48357787 48358017 -179166561 - MIR SINE MIR -3 259 12 2545 108 9 0 chr3 48358238 48358572 -179166006 - MER1B DNA MER1_type 0 337 1 263 279 77 0 chr3 48358737 48358858 -179165720 + L1ME LINE L1 5690 5815 -319 662 289 57 40 chr3 48358896 48359294 -179165284 + LTR16B LTR ERVL 6 436 -14 294 53 0 0 chr3 48359501 48359539 -179165039 - tRNA-Cys-TGC tRNA tRNA -37 38 1 290 274 21 11 chr3 48360216 48360311 -179164267 + CT-rich Low_complexity Low_complexity 1 96 0 242 291 17 23 chr3 48360941 48361043 -179163535 - MIR SINE MIR -94 114 12 1306 134 34 0 chr3 48361293 48361502 -179163076 - L1MC3 LINE L1 -169 7616 7401 258 273 23 34 chr3 48361817 48361905 -179162673 + MER5A DNA MER1_type 1 87 -102 26 0 0 0 chr3 48361909 48361935 -179162643 + AT_rich Low_complexity Low_complexity 1 26 0 271 306 126 0 chr3 48361935 48362046 -179162532 + MER5A DNA MER1_type 63 187 -2 182 233 47 0 chr3 48362647 48362690 -179161888 - MIR SINE MIR -60 148 104 187 233 0 0 chr3 48362775 48362818 -179161760 + L2 LINE L2 3230 3272 0 296 320 61 50 chr3 48362895 48363076 -179161502 + MIR SINE MIR 25 207 -55 199 281 150 13 chr3 48363134 48363287 -179161291 - L2 LINE L2 -1105 2209 2036 271 301 196 6 chr3 48363349 48363522 -179161056 + MIR SINE MIR 47 252 -10 995 221 77 0 chr3 48364050 48364258 -179160320 - MER58A DNA MER1_type 0 224 1 2076 239 61 9 chr3 48364302 48364938 -179159640 + L1ME3 LINE L1 5451 6160 -2 211 287 9 102 chr3 48365877 48365936 -179158642 - MIR SINE MIR -6 256 210 1027 196 9 37 chr3 48365936 48366150 -179158428 - MER3 DNA MER1_type 0 209 2 211 287 9 102 chr3 48366150 48366198 -179158380 - MIR SINE MIR -52 210 159 234 271 0 17 chr3 48366200 48366259 -179158319 - MLT1L LTR MaLR -2 613 556 23 97 0 0 chr3 48366286 48366358 -179158220 + AT_rich Low_complexity Low_complexity 1 72 0 226 228 18 0 chr3 48366587 48366644 -179157934 - MLT1K LTR MaLR -342 246 189 374 241 45 18 chr3 48366790 48366902 -179157676 - MIR SINE MIR -108 154 40 181 271 0 0 chr3 48367963 48368011 -179156567 + MIR SINE MIR 96 143 -119 757 280 29 46 chr3 48370057 48370364 -179154214 - MER102b DNA MER1_type -13 328 27 882 229 5 5 chr3 48370384 48370572 -179154006 - MER5A DNA MER1_type -1 188 1 13954 150 17 27 chr3 48371451 48374129 -179150449 - L1M1 LINE L1 -743 6822 4190 346 65 0 0 chr3 48374131 48374177 -179150401 - AluSx SINE Alu -4 296 251 1160 133 0 0 chr3 48374177 48374335 -179150243 - AluSx SINE Alu -146 166 9 6633 160 38 7 chr3 48374336 48375599 -179148979 - L1M1 LINE L1 -3382 4183 1225 560 144 40 48 chr3 48375622 48375747 -179148831 - L1M1 LINE L1 -7426 139 16 382 262 24 16 chr3 48375971 48376097 -179148481 + MIR SINE MIR 21 147 -115 276 352 11 0 chr3 48376306 48376397 -179148181 - MIR SINE MIR -59 149 58 200 176 0 0 chr3 48376580 48376614 -179147964 + (CA)n Simple_repeat Simple_repeat 2 35 0 204 222 0 0 chr3 48376710 48376746 -179147832 + (TG)n Simple_repeat Simple_repeat 2 37 0 195 296 151 17 chr3 48376825 48376997 -179147581 + L2 LINE L2 2625 2819 -495 228 317 81 16 chr3 48377257 48377380 -179147198 + L2 LINE L2 3141 3271 -1 363 272 94 49 chr3 48377725 48377949 -179146629 + MLT1L LTR MaLR 368 601 -14 2641 249 80 68 chr3 48377961 48378999 -179145579 + MER69B DNA AcHobo 17 1073 -1453 2742 85 8 11 chr3 48378999 48379375 -179145203 - THE1C LTR MaLR 0 375 1 2641 249 80 68 chr3 48379375 48379531 -179145047 + MER69B DNA AcHobo 1073 1226 0 374 221 205 31 chr3 48379548 48379675 -179144903 - MIR SINE MIR -59 203 55 245 291 8 52 chr3 48379722 48379856 -179144722 - L2 LINE L2 -181 3091 2964 573 218 18 0 chr3 48380070 48380180 -179144398 + MER81 DNA DNA 1 112 -2 1868 153 0 46 chr3 48380440 48380767 -179143811 - AluJo SINE Alu 0 312 1 250 333 9 26 chr3 48380972 48381086 -179143492 - MER5A DNA MER1_type -43 146 35 3135 176 21 8 chr3 48381339 48381923 -179142655 - L1MC2 LINE L1 -10 7981 6208 425 274 29 0 chr3 48381923 48382025 -179142553 - MLT1F1 LTR MaLR -447 120 16 271 294 44 29 chr3 48382075 48382211 -179142367 + L1ME4a LINE L1 5978 6115 -6 451 309 60 57 chr3 48382224 48382593 -179141985 + L3 LINE CR1 667 1036 -541 499 141 0 0 chr3 48382674 48382745 -179141833 - AluJ/FLAM SINE Alu -240 72 2 1560 133 4 0 chr3 48382885 48383110 -179141468 - MSTB1 LTR MaLR -3 429 204 628 124 0 16 chr3 48383114 48383235 -179141343 + (GGA)n Simple_repeat Simple_repeat 3 121 0 769 193 169 5 chr3 48383235 48383442 -179141136 - MSTB1 LTR MaLR -197 229 1 664 286 100 4 chr3 48383445 48383676 -179140902 + LTR16C LTR ERVL 180 432 -59 225 0 0 0 chr3 48383773 48383798 -179140780 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 6346 161 16 6 chr3 48383804 48385911 -179138667 - L1PA16 LINE L1 -9 6157 4033 195 333 108 9 chr3 48386075 48386186 -179138392 + L3 LINE CR1 1197 1318 -259 1902 110 0 11 chr3 48386242 48386524 -179138054 - L1PA15 LINE L1 -3 6162 5884 470 277 79 33 chr3 48386633 48386718 -179137860 + MLT1K LTR MaLR 22 102 -486 1405 126 0 0 chr3 48386718 48386932 -179137646 - L1PA15 LINE L1 -1 6164 5951 470 277 79 33 chr3 48386932 48387103 -179137475 + MLT1K LTR MaLR 102 360 -228 2228 94 26 10 chr3 48387159 48387466 -179137112 + AluSx SINE Alu 1 312 0 226 254 28 0 chr3 48387569 48387640 -179136938 + MLT1K LTR MaLR 515 587 -1 425 317 38 11 chr3 48387683 48387866 -179136712 + L3 LINE CR1 1348 1535 -42 280 336 41 8 chr3 48388678 48388800 -179135778 + MIR SINE MIR 63 188 -74 366 298 112 21 chr3 48389340 48389528 -179135050 - MIR SINE MIR -24 238 34 236 309 0 0 chr3 48389683 48389764 -179134814 - MER5A DNA MER1_type -105 84 4 1063 206 71 94 chr3 48390097 48390563 -179134015 + LTR16A1 LTR ERVL 1 455 -2 227 287 79 10 chr3 48390628 48390729 -179133849 - MIR SINE MIR -96 166 59 5830 92 7 37 chr3 48391841 48392724 -179131854 + L1MA2 LINE L1 5449 6304 0 1093 118 6 6 chr3 48392963 48393141 -179131437 - L1MB3 LINE L1 0 6183 6006 233 100 0 50 chr3 48393141 48393174 -179131404 + L1MB3 LINE L1 5919 5951 -232 941 198 0 59 chr3 48393911 48394113 -179130465 - MER20 DNA MER1_type 0 219 30 23 33 0 0 chr3 48394131 48394161 -179130417 + AT_rich Low_complexity Low_complexity 1 30 0 791 138 25 50 chr3 48394161 48394320 -179130258 + MER53 DNA DNA 35 189 0 254 162 0 0 chr3 48394322 48394359 -179130219 - MER20 DNA MER1_type -182 37 1 527 236 18 0 chr3 48394363 48394473 -179130105 - MER81 DNA DNA -1 113 2 797 186 124 41 chr3 48395388 48395582 -179128996 - MER63A DNA MER1_type 0 210 1 398 217 35 35 chr3 48395946 48396061 -179128517 + MIR SINE MIR 8 122 -140 282 227 3 0 chr3 48396473 48396538 -179128040 - MLT1K LTR MaLR -5 610 526 459 209 29 9 chr3 48396799 48396904 -179127674 - MLT1L LTR MaLR -367 248 142 196 306 122 0 chr3 48397683 48397781 -179126797 - MIR SINE MIR 0 262 153 568 291 16 11 chr3 48397833 48398022 -179126556 - MIR SINE MIR -44 218 29 1270 234 69 3 chr3 48398387 48398707 -179125871 + MER58B DNA MER1_type 1 341 0 643 248 134 44 chr3 48399227 48399525 -179125053 + LTR16C LTR ERVL 1 325 -166 265 170 0 21 chr3 48399572 48399619 -179124959 + LTR16C LTR ERVL 445 490 -1 1140 216 35 58 chr3 48400317 48400660 -179123918 - MER46C DNA MER2_type 0 338 4 234 233 50 0 chr3 48401729 48401789 -179122789 - MIR SINE MIR -37 225 163 615 293 69 41 chr3 48401907 48402299 -179122279 + LTR16C LTR ERVL 89 491 0 482 271 124 14 chr3 48403180 48403390 -179121188 + MIR SINE MIR 22 254 -8 678 278 139 51 chr3 48403455 48403966 -179120612 + LTR67 LTR ERVL 2 557 0 233 125 0 0 chr3 48405298 48405330 -179119248 - LTR16A1 LTR ERVL -2 455 424 182 265 29 0 chr3 48406229 48406297 -179118281 + L2 LINE L2 2933 3002 -270 247 331 115 0 chr3 48407419 48407558 -179117020 - MIR SINE MIR -11 251 97 1400 116 10 34 chr3 48407600 48407807 -179116771 - AluSg/x SINE Alu -21 289 88 2443 227 34 51 chr3 48408417 48409127 -179115451 - L1ME3A LINE L1 -1 6169 5472 1780 174 0 10 chr3 48410011 48410321 -179114257 + AluJo SINE Alu 1 307 -5 182 200 0 0 chr3 48410365 48410395 -179114183 - MER5A DNA MER1_type -138 51 22 1592 190 42 73 chr3 48411047 48411457 -179113121 + MLT2C1 LTR ERVL 1 397 0 421 285 67 22 chr3 48412506 48412685 -179111893 + MIR3 SINE MIR 7 193 -15 195 197 171 26 chr3 48414734 48414810 -179109768 + MIR3 SINE MIR 108 194 -14 572 286 92 4 chr3 48415182 48415420 -179109158 + MIR SINE MIR 4 262 0 180 175 0 0 chr3 48416447 48416487 -179108091 + MIR SINE MIR 101 140 -68 305 188 0 194 chr3 48416824 48416989 -179107589 + MER94 DNA DNA 2 134 0 534 256 39 23 chr3 48417062 48417191 -179107387 + MER20B DNA MER1_type 45 175 -608 246 62 0 0 chr3 48417507 48417539 -179107039 + (TG)n Simple_repeat Simple_repeat 1 32 0 200 146 42 42 chr3 48417579 48417627 -179106951 + (TATG)n Simple_repeat Simple_repeat 3 50 0 598 160 130 0 chr3 48418395 48418526 -179106052 - MIR SINE MIR -48 214 67 2290 105 3 7 chr3 48418845 48419149 -179105429 - AluSq SINE Alu -10 303 1 2107 233 46 19 chr3 48419203 48419723 -179104855 - MLT1H LTR MaLR -2 547 14 232 315 0 33 chr3 48420237 48420329 -179104249 - MIR SINE MIR -166 96 8 366 278 135 47 chr3 48421540 48421892 -179102686 - MLT1J2 LTR MaLR 0 450 126 858 161 20 13 chr3 48422143 48422292 -179102286 + FRAM SINE Alu 1 150 -26 1399 241 78 55 chr3 48422336 48422949 -179101629 + L2 LINE L2 2454 3098 -215 627 225 185 11 chr3 48422949 48423127 -179101451 + MER63A DNA MER1_type 1 209 -1 1399 241 78 55 chr3 48423127 48423349 -179101229 + L2 LINE L2 3098 3313 0 1577 145 61 81 chr3 48423640 48423950 -179100628 + AluJb SINE Alu 1 304 -8 358 299 127 26 chr3 48424144 48424452 -179100126 + L1ME LINE L1 5485 5823 -298 727 254 36 0 chr3 48425617 48425782 -179098796 - MIR SINE MIR -82 180 10 335 326 39 0 chr3 48429870 48429999 -179094579 + MARNA DNA Mariner 132 265 -321 7296 215 21 102 chr3 48430055 48432303 -179092275 - L1M4 LINE L1 -1096 5050 2893 1293 14 0 0 chr3 48432303 48432447 -179092131 - AluYa5/8 SINE Alu 0 310 167 7296 215 21 102 chr3 48432447 48432705 -179091873 - L1M4 LINE L1 -3253 2893 2616 2896 212 45 10 chr3 48432700 48433388 -179091190 - L1MDa LINE L1 -5402 1138 13 * 399 321 18 18 chr3 48433596 48433764 -179090814 - L1ME LINE L1 -351 5770 5603 741 159 97 0 chr3 48434181 48434326 -179090252 - MER3 DNA MER1_type 0 209 51 383 286 91 0 chr3 48435714 48435868 -179088710 - MIR SINE MIR -32 230 63 670 266 176 38 chr3 48436072 48436441 -179088137 + LTR16A1 LTR ERVL 72 457 0 1766 175 13 19 chr3 48436986 48437444 -179087134 + AluJo SINE Alu 1 456 0 2417 136 8 8 chr3 48438038 48438428 -179086150 + MLT1B LTR MaLR 1 390 0 266 306 0 0 chr3 48439330 48439415 -179085163 + GA-rich Low_complexity Low_complexity 2 86 0 347 253 53 40 chr3 48439880 48440030 -179084548 - MIR SINE MIR 0 262 111 1720 163 24 7 chr3 48440879 48441174 -179083404 + AluJo SINE Alu 9 308 -4 204 314 57 0 chr3 48441477 48441582 -179082996 + MIR SINE MIR 81 191 -71 459 286 56 6 chr3 48442788 48442949 -179081629 - MIR SINE MIR -74 188 20 2388 131 72 15 chr3 48443253 48443658 -179080920 - MSTA LTR MaLR 0 428 1 1063 230 65 4 chr3 48443849 48444110 -179080468 - LTR16C LTR ERVL -34 457 181 1567 173 28 35 chr3 48444151 48444440 -179080138 + AluJo SINE Alu 9 295 -17 1430 229 48 16 chr3 48446444 48446815 -179077763 - LTR16C LTR ERVL -2 489 107 616 62 0 12 chr3 48447647 48447728 -179076850 + MADE1 DNA Mariner 1 80 0 204 97 0 0 chr3 48448127 48448158 -179076420 + (TTCA)n Simple_repeat Simple_repeat 1 31 0 1338 166 180 38 chr3 48448324 48448375 -179076203 + L1MC4a LINE L1 6911 6953 -855 189 94 0 0 chr3 48448375 48448407 -179076171 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 1338 166 180 38 chr3 48448407 48448487 -179076091 + L1MC4a LINE L1 6953 7020 -788 1822 154 13 29 chr3 48448487 48448799 -179075779 + AluJb SINE Alu 1 307 -5 1338 166 180 38 chr3 48448799 48449033 -179075545 + L1MC4a LINE L1 7020 7329 -479 1881 199 5 38 chr3 48449040 48449085 -179075493 + L1MC4a LINE L1 7431 7476 -332 1852 141 65 0 chr3 48449085 48449376 -179075202 - AluSg SINE Alu 0 310 1 1881 199 5 38 chr3 48449376 48449721 -179074857 + L1MC4a LINE L1 7476 7808 0 1429 253 155 13 chr3 48450063 48450541 -179074037 + MLT1H LTR MaLR 4 549 0 1109 270 95 60 chr3 48452793 48453223 -179071355 - LTR16C LTR ERVL -12 479 35 356 276 55 35 chr3 48453223 48453368 -179071210 + HAL1 LINE L1 1026 1173 -1334 494 260 94 38 chr3 48453394 48453502 -179071076 + MER112 DNA MER1_type 12 113 -147 2488 201 45 52 chr3 48453502 48454060 -179070518 - MLT2B3 LTR ERVL 0 554 1 494 260 94 38 chr3 48454060 48454186 -179070392 + MER112 DNA MER1_type 113 259 -1 1363 259 43 47 chr3 48454188 48454416 -179070162 + HAL1 LINE L1 1214 1441 -1066 2097 130 0 0 chr3 48454416 48454736 -179069842 + AluSq SINE Alu 1 320 0 1363 259 43 47 chr3 48454736 48455039 -179069539 + HAL1 LINE L1 1441 1744 -763 435 195 39 23 chr3 48455280 48455408 -179069170 + HAL1 LINE L1 2073 2202 -305 181 318 149 0 chr3 48456705 48456812 -179067766 - MIR SINE MIR -65 197 75 2087 150 0 0 chr3 48457040 48457346 -179067232 + AluSx SINE Alu 1 306 -6 254 257 30 50 chr3 48458170 48458271 -179066307 + LTR67 LTR ERVL 458 556 -1 851 260 74 15 chr3 48458701 48458970 -179065608 + MER113 DNA MER1_type? 179 463 -58 801 286 184 18 chr3 48459395 48459829 -179064749 - L2 LINE L2 0 3313 2808 712 100 0 0 chr3 48460715 48460815 -179063763 - L1PB4 LINE L1 -12 6144 6045 1102 259 85 57 chr3 48461382 48461413 -179063165 - MLT1G1 LTR MaLR 0 595 566 1911 166 42 14 chr3 48461413 48461768 -179062810 + MLT1A1 LTR MaLR 1 365 0 1102 259 85 57 chr3 48461768 48461930 -179062648 - MLT1G1 LTR MaLR -29 566 410 1095 221 147 28 chr3 48461930 48462256 -179062322 - MLT1A1 LTR MaLR 0 365 1 1102 259 85 57 chr3 48462256 48462567 -179062011 - MLT1G1 LTR MaLR -185 410 76 720 286 24 28 chr3 48462622 48462901 -179061677 - LTR16A1 LTR ERVL -14 443 158 200 327 39 0 chr3 48463163 48463267 -179061311 - MIR SINE MIR -63 199 92 995 180 18 50 chr3 48463559 48463781 -179060797 + MER20 DNA MER1_type 2 216 -3 719 284 37 37 chr3 48464290 48464589 -179059989 + MARNA DNA Mariner 64 362 -224 219 369 41 8 chr3 48464814 48464863 -179059715 - L2 LINE L2 -38 3234 3188 2209 91 0 7 chr3 48464863 48465190 -179059388 + AluSq SINE Alu 1 325 0 219 369 41 8 chr3 48465190 48465261 -179059317 - L2 LINE L2 -84 3188 3109 233 314 38 0 chr3 48469347 48469452 -179055126 - LTR67 LTR ERVL -17 540 432 21 36 0 0 chr3 48470160 48470188 -179054390 + AT_rich Low_complexity Low_complexity 1 28 0 695 321 40 48 chr3 48470899 48471437 -179053141 + L1ME4a LINE L1 5318 5852 -312 216 246 35 0 chr3 48471626 48471683 -179052895 + A-rich Low_complexity Low_complexity 2 60 0 283 271 128 73 chr3 48471794 48472067 -179052511 - L2 LINE L2 -779 2535 2248 788 271 81 46 chr3 48472175 48472522 -179052056 - MLT1J LTR MaLR -144 367 9 211 330 86 30 chr3 48472539 48472736 -179051842 - L2 LINE L2 -1081 2233 2026 683 252 97 18 chr3 48472747 48472853 -179051725 + LTR16C LTR ERVL 175 271 -220 1764 147 0 86 chr3 48472853 48473179 -179051399 + AluJo SINE Alu 1 298 -14 683 252 97 18 chr3 48473179 48473298 -179051280 + LTR16C LTR ERVL 271 418 -73 433 340 108 26 chr3 48474152 48474643 -179049935 - L2 LINE L2 -436 2878 2348 201 250 0 0 chr3 48475120 48475160 -179049418 + L2 LINE L2 3262 3301 -12 2374 95 3 0 chr3 48475234 48475539 -179049039 - AluSg SINE Alu -3 307 2 2393 94 0 13 chr3 48475540 48475847 -179048731 - AluSg SINE Alu -7 303 1 415 221 14 76 chr3 48477177 48477322 -179047256 + L1ME4a LINE L1 5664 5799 -322 2275 87 24 0 chr3 48477400 48477688 -179046890 - AluSx SINE Alu -17 295 1 728 273 25 73 chr3 48478001 48478089 -179046489 - L1ME4a LINE L1 -227 5894 5803 2315 73 7 13 chr3 48478089 48478390 -179046188 - AluY SINE Alu -12 299 1 728 273 25 73 chr3 48478390 48478656 -179045922 - L1ME4a LINE L1 -318 5803 5557 1294 221 0 8 chr3 48478672 48478926 -179045652 + MER46C DNA MER2_type 39 290 -48 32 0 0 0 chr3 48479494 48479526 -179045052 + AT_rich Low_complexity Low_complexity 1 32 0 2177 98 3 0 chr3 48479526 48479811 -179044767 - AluSx SINE Alu -26 286 1 281 286 188 38 chr3 48479816 48479949 -179044629 + MIR SINE MIR 110 262 0 282 267 60 17 chr3 48481494 48481610 -179042968 + L1ME4a LINE L1 5964 6084 -37 259 305 46 13 chr3 48481932 48482083 -179042495 + L1ME4a LINE L1 5965 6120 -1 234 81 0 0 chr3 48482091 48482128 -179042450 + (T)n Simple_repeat Simple_repeat 1 37 0 260 269 13 0 chr3 48482242 48482320 -179042258 - MER116 DNA Mariner 0 80 2 286 277 50 10 chr3 48482546 48482647 -179041931 - L2 LINE L2 0 3313 3209 751 171 0 16 chr3 48482671 48482827 -179041751 - FLAM_C SINE Alu 0 133 1 2204 92 4 0 chr3 48482967 48483248 -179041330 + AluSp SINE Alu 1 282 -31 378 0 0 0 chr3 48483251 48483293 -179041285 + (TAAA)n Simple_repeat Simple_repeat 4 45 0 208 293 41 32 chr3 48483739 48483862 -179040716 - MIR SINE MIR -119 143 20 186 299 52 0 chr3 48484263 48484340 -179040238 - MIR SINE MIR -14 248 168 487 203 55 39 chr3 48484439 48484567 -179040011 - MER3 DNA MER1_type -79 130 1 202 147 0 0 chr3 48484678 48484712 -179039866 + L2 LINE L2 3278 3311 -2 282 314 33 33 chr3 48485041 48485162 -179039416 - MIR3 SINE MIR -20 188 68 2417 164 0 0 chr3 48485380 48485745 -179038833 + MLT1A1 LTR MaLR 1 365 0 815 306 82 6 chr3 48485768 48486098 -179038480 + L1MC4a LINE L1 5477 5831 -1977 237 296 86 72 chr3 48486102 48486254 -179038324 - MER91A DNA MER1_type 0 196 43 1244 238 122 36 chr3 48488067 48488453 -179036125 - LTR16C LTR ERVL 0 491 73 703 309 28 61 chr3 48488795 48489190 -179035388 - L2 LINE L2 -3 3310 2929 236 330 28 9 chr3 48489360 48489466 -179035112 + L2 LINE L2 3197 3304 -9 469 305 7 7 chr3 48490111 48490262 -179034316 - MIR SINE MIR -92 170 20 356 214 29 0 chr3 48490889 48490959 -179033619 - MLT1K LTR MaLR 0 588 517 421 169 34 22 chr3 48494003 48494092 -179030486 - MER3 DNA MER1_type -119 90 1 685 183 0 0 chr3 48494380 48494495 -179030083 + FLAM_C SINE Alu 2 116 -27 251 202 60 36 chr3 48494805 48494889 -179029689 - L1MC/D LINE L1 -2004 5804 5719 244 238 48 0 chr3 48494891 48494954 -179029624 + L2 LINE L2 3207 3272 0 1505 192 24 3 chr3 48495098 48495385 -179029193 - AluJo SINE Alu -19 293 1 333 233 0 0 chr3 48495437 48495523 -179029055 + MIR3 SINE MIR 111 196 -12 25 0 0 0 chr3 48495910 48495935 -179028643 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr3 48495969 48495993 -179028585 + (A)n Simple_repeat Simple_repeat 1 24 0 202 180 49 66 chr3 48496093 48496154 -179028424 - MIR SINE MIR -108 154 95 258 222 48 0 chr3 48496742 48496805 -179027773 - L2 LINE L2 0 3272 3207 198 103 0 0 chr3 48496976 48497005 -179027573 + (A)n Simple_repeat Simple_repeat 1 29 0 357 251 30 64 chr3 48497117 48497320 -179027258 + L2 LINE L2 3118 3313 0 180 229 57 29 chr3 48497397 48497467 -179027111 + MIR SINE MIR 191 262 0 298 247 65 0 chr3 48497709 48497802 -179026776 + MER113 DNA MER1_type? 10 108 -413 271 200 82 35 chr3 48497868 48497953 -179026625 + MER113 DNA MER1_type? 208 296 -225 231 36 0 0 chr3 48498102 48498130 -179026448 + (TG)n Simple_repeat Simple_repeat 2 29 0 330 275 39 56 chr3 48498158 48498336 -179026242 + L1MEc LINE L1 1948 2122 -4274 336 274 98 43 chr3 48498347 48498511 -179026067 + MER113 DNA MER1_type? 306 478 -43 1261 146 38 9 chr3 48498715 48498928 -179025650 + MER20 DNA MER1_type 1 219 0 719 252 28 19 chr3 48500720 48500934 -179023644 - MIR SINE MIR -2 260 45 579 324 47 5 chr3 48503275 48503488 -179021090 + LTR67 LTR ERVL 40 261 -296 635 312 64 5 chr3 48503533 48503735 -179020843 + LTR67 LTR ERVL 339 552 -5 849 246 148 74 chr3 48503754 48503853 -179020725 - MLT1K LTR MaLR -22 566 476 809 218 79 0 chr3 48503853 48504018 -179020560 - MER45A DNA AcHobo 0 178 1 849 246 148 74 chr3 48504018 48504243 -179020335 - MLT1K LTR MaLR -112 476 218 257 287 2 10 chr3 48504631 48504729 -179019849 + MLT1I LTR MaLR 318 401 -8 237 226 143 12 chr3 48505257 48505341 -179019237 - MER103 DNA DNA -65 101 7 242 241 35 78 chr3 48505692 48505808 -179018770 - MLT1L LTR MaLR 0 615 505 751 202 119 37 chr3 48506194 48506412 -179018166 - L1ME3A LINE L1 -1 6169 5934 759 243 46 14 chr3 48507068 48507286 -179017292 - MIR SINE MIR -1 261 37 887 283 35 29 chr3 48507870 48508231 -179016347 - LTR16A1 LTR ERVL -1 456 126 363 247 11 47 chr3 48508253 48508358 -179016220 + FRAM/FAM SINE Alu 2 87 -79 320 200 0 0 chr3 48508466 48508521 -179016057 + FAM SINE Alu 109 158 -21 1090 165 0 15 chr3 48509088 48509294 -179015284 - L1MB8 LINE L1 0 6178 5976 2071 134 3 3 chr3 48510650 48510949 -179013629 - AluSp SINE Alu 0 313 15 198 96 39 19 chr3 48511421 48511473 -179013105 + (TCTA)n Simple_repeat Simple_repeat 4 56 0 1802 157 37 17 chr3 48511619 48511913 -179012665 + AluJo SINE Alu 1 300 -12 437 279 60 9 chr3 48512333 48512548 -179012030 + L1MC4a LINE L1 4981 5206 -940 459 92 0 0 chr3 48512551 48512616 -179011962 + (GGA)n Simple_repeat Simple_repeat 2 66 0 278 245 184 14 chr3 48512738 48512885 -179011693 + L1MC4a LINE L1 5320 5491 -2317 984 230 58 97 chr3 48512904 48513286 -179011292 - LTR16C LTR ERVL -38 453 87 1349 220 73 86 chr3 48513340 48513862 -179010716 + L1MC4a LINE L1 5486 6000 -1808 21 0 0 0 chr3 48514073 48514094 -179010484 + AT_rich Low_complexity Low_complexity 1 21 0 366 42 0 0 chr3 48514298 48514346 -179010232 + (CA)n Simple_repeat Simple_repeat 2 49 0 492 224 49 28 chr3 48514572 48514715 -179009863 - LTR67 LTR ERVL -2 555 410 289 284 0 0 chr3 48515939 48516006 -179008572 + L2 LINE L2 3205 3271 -1 370 216 72 3 chr3 48516080 48516236 -179008342 + MER3 DNA MER1_type 1 209 0 292 250 17 0 chr3 48516183 48516243 -179008335 - MER3 DNA MER1_type -108 101 41 * 336 240 62 27 chr3 48516243 48516389 -179008189 + MIR SINE MIR 52 202 -60 194 333 29 0 chr3 48516519 48516588 -179007990 - MIR SINE MIR -141 121 51 352 269 83 7 chr3 48517203 48517348 -179007230 + Charlie7 DNA MER1_type 2 157 -2455 262 239 97 9 chr3 48517330 48517443 -179007135 + Charlie7 DNA MER1_type 2484 2606 -6 * 279 176 25 22 chr3 48517534 48517624 -179006954 - MLT1H LTR MaLR -2 576 476 193 250 12 24 chr3 48517654 48517738 -179006840 + L3 LINE CR1 1155 1237 -340 191 146 24 0 chr3 48520681 48520722 -179003856 + (TG)n Simple_repeat Simple_repeat 2 43 0 856 180 124 41 chr3 48524835 48525029 -178999549 - MER63A DNA MER1_type 0 210 1 437 217 35 35 chr3 48525393 48525508 -178999070 + MIR SINE MIR 8 122 -140 282 227 3 0 chr3 48525920 48525985 -178998593 - MLT1K LTR MaLR -5 610 526 454 204 29 10 chr3 48526249 48526352 -178998226 - MLT1L LTR MaLR -369 246 142 221 296 122 0 chr3 48527130 48527228 -178997350 - MIR SINE MIR 0 262 153 632 281 15 30 chr3 48527266 48527469 -178997109 - MIR SINE MIR -34 228 29 183 306 214 0 chr3 48528643 48528741 -178995837 - L2 LINE L2 -1104 2210 2092 751 100 0 0 chr3 48529195 48529295 -178995283 - L1PB4 LINE L1 -12 6144 6045 528 186 113 67 chr3 48529862 48529893 -178994685 - MLT1F LTR MaLR 0 542 514 2009 172 42 14 chr3 48529893 48530248 -178994330 + MLT1A1 LTR MaLR 1 365 0 528 186 113 67 chr3 48530248 48530410 -178994168 - MLT1F LTR MaLR -28 514 340 2248 167 34 0 chr3 48530410 48530763 -178993815 - MLT1A1 LTR MaLR 0 365 1 328 314 33 33 chr3 48530981 48531102 -178993476 + MIR3 SINE MIR 68 188 -20 212 147 0 0 chr3 48531431 48531465 -178993113 - L2 LINE L2 -2 3311 3278 489 203 55 39 chr3 48531576 48531704 -178992874 + MER3 DNA MER1_type 1 130 -79 200 312 52 0 chr3 48531803 48531880 -178992698 + MIR SINE MIR 168 248 -14 852 290 32 23 chr3 48532465 48532825 -178991753 - LTR16A1 LTR ERVL -1 456 126 359 247 11 47 chr3 48532847 48532952 -178991626 + FRAM/FAM SINE Alu 2 87 -79 318 200 0 0 chr3 48533060 48533115 -178991463 + FAM SINE Alu 109 158 -17 973 272 95 57 chr3 48533900 48534323 -178990255 - LTR16C LTR ERVL -11 480 42 265 192 192 50 chr3 48534361 48534481 -178990097 + HAL1 LINE L1 1062 1198 -1309 2332 209 45 56 chr3 48534609 48535144 -178989434 - MLT2B3 LTR ERVL 0 554 26 985 265 0 0 chr3 48535245 48535411 -178989167 + G-rich Low_complexity Low_complexity 1 166 0 421 262 24 16 chr3 48536016 48536142 -178988436 - MIR SINE MIR -115 147 21 562 144 40 48 chr3 48536366 48536491 -178988087 + L1M1 LINE L1 16 139 -7426 2110 220 19 12 chr3 48536514 48536995 -178987583 + L1M1 LINE L1 1225 1708 -5857 532 172 35 7 chr3 48537645 48537790 -178986788 + CT-rich Low_complexity Low_complexity 1 149 0 1706 181 13 19 chr3 48537792 48538106 -178986472 - AluJo SINE Alu 0 312 1 507 270 178 0 chr3 48538634 48538819 -178985759 - L2 LINE L2 -1630 1684 1467 1009 255 138 17 chr3 48538831 48539192 -178985386 - L2 LINE L2 -2220 1094 690 395 283 113 53 chr3 48539359 48539659 -178984919 - L2 LINE L2 -2611 703 386 229 170 0 0 chr3 48540673 48540720 -178983858 + G-rich Low_complexity Low_complexity 1 47 0 192 149 0 0 chr3 48540771 48540818 -178983760 + (TGGGGG)n Simple_repeat Simple_repeat 4 50 0 26 30 0 0 chr3 48541776 48541809 -178982769 + AT_rich Low_complexity Low_complexity 1 33 0 428 214 14 76 chr3 48541877 48542022 -178982556 - L1ME LINE L1 -322 5799 5664 2625 203 28 23 chr3 48542634 48543550 -178981028 + L1P5 LINE L1 4764 5681 -475 189 0 0 0 chr3 48543783 48543804 -178980774 + (G)n Simple_repeat Simple_repeat 1 21 0 180 0 0 0 chr3 48546712 48546732 -178977846 + (T)n Simple_repeat Simple_repeat 1 20 0 548 289 125 17 chr3 48548171 48548458 -178976120 - MER102a DNA MER1_type -12 318 1 1686 132 72 4 chr3 48549098 48549363 -178975215 + AluSx SINE Alu 11 293 -19 2310 284 256 35 chr3 48551323 48553208 -178971370 + L2 LINE L2 189 1656 -1658 6601 122 76 38 chr3 48553208 48553848 -178970730 - Tigger3b DNA MER2_type -1798 1230 616 2513 50 0 7 chr3 48553848 48554151 -178970427 + AluY SINE Alu 1 301 -10 6601 122 76 38 chr3 48554151 48554473 -178970105 - Tigger3b DNA MER2_type -2412 616 212 1718 155 20 30 chr3 48554473 48554769 -178969809 - AluJo SINE Alu -19 293 1 6601 122 76 38 chr3 48554769 48554989 -178969589 - Tigger3b DNA MER2_type -2816 212 2 2310 284 256 35 chr3 48554989 48555023 -178969555 + L2 LINE L2 1656 1681 -1633 180 0 0 0 chr3 48555023 48555043 -178969535 + (CATGC)n Simple_repeat Simple_repeat 4 23 0 2310 284 256 35 chr3 48555043 48555061 -178969517 + L2 LINE L2 1681 1694 -1620 2479 153 49 7 chr3 48555061 48555493 -178969085 - L1PA16 LINE L1 -7 6159 5710 2310 284 256 35 chr3 48555493 48555722 -178968856 + L2 LINE L2 1694 2837 -477 220 207 73 61 chr3 48555902 48555984 -178968594 + L2 LINE L2 3186 3268 -4 232 269 126 60 chr3 48556008 48556190 -178968388 + L2 LINE L2 1727 1920 -1394 554 208 17 33 chr3 48556248 48556368 -178968210 + MER3 DNA MER1_type 1 118 -91 798 311 101 61 chr3 48556443 48557254 -178967324 + L2 LINE L2 2429 3267 -5 332 214 138 41 chr3 48557871 48558016 -178966562 + MER5A DNA MER1_type 31 189 0 1494 174 113 22 chr3 48558385 48558696 -178965882 + MER58B DNA MER1_type 2 340 -1 2089 94 10 36 chr3 48558772 48559081 -178965497 + AluSg1 SINE Alu 1 301 -8 189 300 146 18 chr3 48559183 48559293 -178965285 - L2 LINE L2 -3 3269 3146 241 304 181 23 chr3 48559726 48559897 -178964681 + MIR SINE MIR 20 217 -45 456 303 162 29 chr3 48560561 48561083 -178963495 + L2 LINE L2 2590 3192 -121 290 270 108 17 chr3 48561131 48561428 -178963150 - L1M4 LINE L1 -362 5812 5444 1253 148 0 87 chr3 48562304 48562533 -178962045 - AluJb SINE Alu -103 209 1 27 0 0 0 chr3 48563645 48563672 -178960906 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr3 48563749 48563773 -178960805 + AT_rich Low_complexity Low_complexity 1 24 0 232 179 0 18 chr3 48564051 48564107 -178960471 + C-rich Low_complexity Low_complexity 2 56 0 1229 198 78 4 chr3 48564873 48565016 -178959562 - MER7A DNA MER2_type -2763 275 144 1510 147 65 31 chr3 48565016 48565309 -178959269 - AluJo SINE Alu -9 303 1 1229 198 78 4 chr3 48565309 48565423 -178959155 - MER7A DNA MER2_type -2894 144 1 408 263 108 54 chr3 48565472 48565658 -178958920 - HAL1 LINE L1 -1236 1271 1076 720 134 8 34 chr3 48566646 48566765 -178957813 + AluSp/q SINE Alu 182 297 -16 24 0 0 0 chr3 48566999 48567023 -178957555 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr3 48567443 48567473 -178957105 + AT_rich Low_complexity Low_complexity 1 30 0 1835 146 11 7 chr3 48569895 48570175 -178954403 - MER1B DNA MER1_type -5 334 54 197 320 101 73 chr3 48570320 48570539 -178954039 - L2 LINE L2 -162 3110 2886 6138 143 44 13 chr3 48571691 48573654 -178950924 - L1PA15 LINE L1 0 6165 4143 279 0 0 0 chr3 48573838 48573869 -178950709 + (TG)n Simple_repeat Simple_repeat 2 32 0 310 326 97 45 chr3 48574425 48574756 -178949822 - L2 LINE L2 -27 3286 2939 1638 96 50 0 chr3 48574769 48574988 -178949590 + MER30 DNA MER1_type 1 230 0 2495 68 0 0 chr3 48575007 48575302 -178949276 + AluY SINE Alu 1 295 -16 213 333 83 25 chr3 48575335 48575455 -178949123 - L2 LINE L2 -421 2893 2767 198 209 142 82 chr3 48575912 48576046 -178948532 - L2 LINE L2 -962 2352 2211 190 277 265 0 chr3 48576108 48576191 -178948387 + MER5A DNA MER1_type 84 188 -1 759 232 194 23 chr3 48576693 48577003 -178947575 + L2 LINE L2 2951 3313 0 873 179 250 0 chr3 48581238 48581434 -178943144 + AluJo SINE Alu 64 308 -4 497 210 188 70 chr3 48581454 48581640 -178942938 + L2 LINE L2 2310 2517 -797 433 173 0 150 chr3 48581630 48581763 -178942815 + L2 LINE L2 3201 3313 0 * 26 0 0 0 chr3 48583878 48583904 -178940674 + AT_rich Low_complexity Low_complexity 1 26 0 225 0 0 0 chr3 48583948 48583973 -178940605 + (T)n Simple_repeat Simple_repeat 1 25 0 25 0 0 0 chr3 48584847 48584872 -178939706 + AT_rich Low_complexity Low_complexity 1 25 0 522 134 72 10 chr3 48585804 48585901 -178938677 + MER96B DNA MER1_type? 131 233 -184 284 279 101 77 chr3 48587069 48587277 -178937301 + L1MC4a LINE L1 5682 5894 -1914 291 279 156 34 chr3 48589325 48589504 -178935074 + MIR SINE MIR 1 201 -61 252 244 107 83 chr3 48589894 48590062 -178934516 - MIR3 SINE MIR -7 201 30 223 202 95 48 chr3 48594360 48594444 -178930134 - MIR SINE MIR -58 204 117 24 0 0 0 chr3 48595275 48595299 -178929279 + AT_rich Low_complexity Low_complexity 1 24 0 4098 224 69 54 chr3 48596128 48598684 -178925894 + L1MDb LINE L1 764 3249 -3157 2329 99 0 3 chr3 48598684 48598997 -178925581 + AluSx SINE Alu 1 312 0 4098 224 69 54 chr3 48598997 48599136 -178925442 + L1MDb LINE L1 3249 3385 -3021 279 0 0 0 chr3 48599214 48599245 -178925333 + (CA)n Simple_repeat Simple_repeat 2 32 0 1351 263 48 43 chr3 48599246 48599284 -178925294 + L1MC/D LINE L1 2227 2263 -3883 2327 94 0 3 chr3 48599284 48599582 -178924996 + AluSq SINE Alu 1 297 -16 1351 263 48 43 chr3 48599582 48600102 -178924476 + L1MC/D LINE L1 2263 2788 -3358 * 2472 219 61 60 chr3 48600078 48600279 -178924299 + L1MC/D LINE L1 4416 4615 -1531 283 103 0 0 chr3 48600279 48600318 -178924260 + U2 snRNA snRNA 1 39 -149 2472 219 61 60 chr3 48600318 48600944 -178923634 + L1MC/D LINE L1 4615 5282 -864 783 196 32 51 chr3 48600955 48601113 -178923465 - FRAM SINE Alu -24 152 1 2252 201 40 28 chr3 48601113 48601434 -178923144 + L1MC/D LINE L1 5272 5603 -741 1796 170 7 10 chr3 48601434 48601734 -178922844 + AluJb SINE Alu 1 299 -13 2252 201 40 28 chr3 48601734 48601909 -178922669 + L1MC/D LINE L1 5603 5774 -570 231 143 16 63 chr3 48603017 48603080 -178921498 + LTR66 LTR ERVL 380 439 -171 242 245 21 64 chr3 48603092 48603186 -178921392 - L1MC4 LINE L1 -1339 6703 6614 216 97 0 0 chr3 48603186 48603217 -178921361 + (TA)n Simple_repeat Simple_repeat 1 31 0 188 359 47 0 chr3 48603517 48603623 -178920955 - MIR SINE MIR -56 152 42 499 347 72 14 chr3 48605317 48605539 -178919039 - MIR SINE MIR -6 256 22 187 270 108 36 chr3 48605594 48605705 -178918873 + MIR3 SINE MIR 2 120 -88 4361 76 4 0 chr3 48610782 48611319 -178913259 - L1PA8A LINE L1 0 6131 5593 257 270 54 32 chr3 48611444 48611570 -178913008 - MIR3 SINE MIR -37 225 87 1325 138 14 14 chr3 48611746 48611956 -178912622 + MER20 DNA MER1_type 7 216 -3 2279 107 7 0 chr3 48612267 48612577 -178912001 + AluSx SINE Alu 1 312 0 474 239 127 7 chr3 48614355 48614497 -178910081 - MIR SINE MIR -2 260 102 1725 193 82 42 chr3 48615056 48615376 -178909202 - L1ME1 LINE L1 -5 6161 5816 2268 96 7 10 chr3 48615376 48615679 -178908899 - AluSq SINE Alu -11 302 1 1725 193 82 42 chr3 48615679 48615808 -178908770 - L1ME1 LINE L1 -350 5816 5694 5130 233 95 45 chr3 48615839 48615894 -178908684 - L1MEc LINE L1 -4592 1804 1753 2180 136 0 0 chr3 48615894 48616202 -178908376 - AluSx SINE Alu -4 308 1 5130 233 95 45 chr3 48616202 48617602 -178906976 - L1MEc LINE L1 -4643 1753 250 2600 163 38 20 chr3 48617602 48618049 -178906529 + MSTB2 LTR MaLR 3 457 0 5130 233 95 45 chr3 48618049 48618275 -178906303 - L1MEc LINE L1 -6146 250 37 236 225 126 40 chr3 48620621 48620772 -178903806 + L1M4 LINE L1 5182 5345 -801 4572 194 55 0 chr3 48620854 48621805 -178902773 + L1PB1 LINE L1 3241 4243 -1903 35738 87 41 12 chr3 48621818 48627796 -178896782 + L1PA6 LINE L1 11 6154 0 6042 159 15 15 chr3 48627786 48627947 -178896631 + L1PB1 LINE L1 4237 4396 -1755 * 243 0 0 0 chr3 48627947 48627974 -178896604 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 6042 159 15 15 chr3 48627974 48629730 -178894848 + L1PB1 LINE L1 4396 6149 -2 309 329 70 0 chr3 48630201 48630344 -178894234 - MIR SINE MIR -55 207 55 264 269 161 63 chr3 48632206 48632429 -178892149 + MLT1L LTR MaLR 38 282 -333 687 57 0 0 chr3 48633787 48633875 -178890703 + (TATG)n Simple_repeat Simple_repeat 1 88 0 2117 111 4 0 chr3 48633875 48634154 -178890424 - AluSp SINE Alu -33 280 1 730 232 125 22 chr3 48634248 48634472 -178890106 - MIR SINE MIR -14 248 2 216 0 0 0 chr3 48635029 48635053 -178889525 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 343 238 0 12 chr3 48635128 48635208 -178889370 + LTR33A LTR ERVL 445 523 0 413 211 35 7 chr3 48635281 48635423 -178889155 + GA-rich Low_complexity Low_complexity 1 146 0 191 226 32 21 chr3 48635400 48635493 -178889085 + G-rich Low_complexity Low_complexity 5 98 0 * 355 208 10 10 chr3 48635537 48635638 -178888940 + GA-rich Low_complexity Low_complexity 4 104 0 402 235 48 31 chr3 48635638 48635884 -178888694 + L1ME3A LINE L1 5734 6125 -45 2354 69 7 10 chr3 48635884 48636188 -178888390 - AluY SINE Alu -8 303 1 402 235 48 31 chr3 48636188 48636230 -178888348 + L1ME3A LINE L1 6125 6165 -5 241 260 143 0 chr3 48636323 48636400 -178888178 - MIR SINE MIR -81 181 94 1699 117 16 8 chr3 48636471 48636719 -178887859 + AluSx SINE Alu 54 303 -9 2318 120 0 0 chr3 48636719 48637028 -178887550 + AluSg SINE Alu 1 309 -1 828 201 47 0 chr3 48637028 48637177 -178887401 + AluSc SINE Alu 132 287 -22 563 293 96 14 chr3 48637617 48637825 -178886753 + MIR SINE MIR 12 236 -26 1381 191 39 84 chr3 48638349 48638731 -178885847 + MLT1A1 LTR MaLR 1 365 0 369 241 24 11 chr3 48638940 48639048 -178885530 + L1MC1 LINE L1 4075 4185 -1961 * 3708 178 62 25 chr3 48639045 48640384 -178884194 + L1MC1 LINE L1 4457 5844 -489 1150 148 46 10 chr3 48640384 48640580 -178883998 + L1MC1 LINE L1 6131 6333 0 241 243 231 30 chr3 48640876 48641045 -178883533 - L2 LINE L2 -266 3047 2845 244 333 26 0 chr3 48641109 48641226 -178883352 + GA-rich Low_complexity Low_complexity 2 121 0 1855 211 40 15 chr3 48643231 48643633 -178880945 + MLT1H LTR MaLR 2 413 -136 496 225 14 42 chr3 48643760 48643902 -178880676 + MLT1H LTR MaLR 408 545 -4 722 323 88 13 chr3 48644071 48644458 -178880120 - L1ME LINE L1 -298 5823 5408 423 0 0 0 chr3 48645119 48645166 -178879412 + (TA)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr3 48647204 48647227 -178877351 + AT_rich Low_complexity Low_complexity 1 23 0 2233 102 0 10 chr3 48648268 48648571 -178876007 + AluSq SINE Alu 1 300 -13 500 253 156 77 chr3 48648797 48649201 -178875377 - LTR67 LTR ERVL -13 544 109 5542 73 32 62 chr3 48649471 48650365 -178874213 + SVA Other Other 1 868 -518 714 145 121 54 chr3 48650474 48650921 -178873657 + SVA Other Other 444 920 -466 6959 58 6 44 chr3 48651144 48652124 -178872454 + SVA Other Other 444 1386 0 1662 179 7 14 chr3 48652496 48652781 -178871797 + AluJo SINE Alu 1 283 -29 274 266 195 0 chr3 48652802 48652930 -178871648 + L1MEd LINE L1 514 666 -5864 280 311 138 39 chr3 48653204 48653608 -178870970 + L1MEd LINE L1 990 1457 -5073 1285 129 129 0 chr3 48653608 48653817 -178870761 + MER46A DNA MER2_type 1 236 0 280 311 138 39 chr3 48653817 48653927 -178870651 + L1MEd LINE L1 1457 1555 -4975 24 53 0 0 chr3 48653990 48654028 -178870550 + AT_rich Low_complexity Low_complexity 1 38 0 255 286 31 83 chr3 48654231 48654289 -178870289 + L1MEd LINE L1 1724 1783 -4938 905 245 0 0 chr3 48654289 48654452 -178870126 - FAM SINE Alu -12 163 1 255 286 31 83 chr3 48654452 48654585 -178869993 + L1MEd LINE L1 1783 1905 -4816 428 260 308 16 chr3 48655004 48655254 -178869324 - MER5C DNA MER1_type -1 323 1 535 243 52 25 chr3 48655431 48655643 -178868935 + L1MEd LINE L1 2471 2684 -3856 1909 156 0 0 chr3 48655669 48655952 -178868626 + AluJb SINE Alu 9 291 -21 24 0 0 0 chr3 48655952 48655976 -178868602 + AT_rich Low_complexity Low_complexity 1 24 0 186 133 0 0 chr3 48655976 48656006 -178868572 + (GGAA)n Simple_repeat Simple_repeat 3 32 0 471 169 0 0 chr3 48656019 48656096 -178868482 + MLT2D LTR ERVL 1 77 -337 3250 83 0 29 chr3 48656136 48656519 -178868059 + MLT2A1 LTR ERVL 5 375 -69 2162 117 3 3 chr3 48656519 48656817 -178867761 - AluSc SINE Alu -11 298 1 3250 83 0 29 chr3 48656817 48656878 -178867700 + MLT2A1 LTR ERVL 375 436 -8 252 0 0 0 chr3 48656911 48656939 -178867639 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1403 195 14 18 chr3 48656948 48657225 -178867353 - AluJo SINE Alu -36 276 1 623 298 72 28 chr3 48657225 48657464 -178867114 + L1MEd LINE L1 3099 3326 -3214 1274 218 3 45 chr3 48657464 48657776 -178866802 + AluJo SINE Alu 1 299 -13 623 298 72 28 chr3 48657776 48658106 -178866472 + L1MEd LINE L1 3326 3693 -2847 654 202 10 87 chr3 48658146 48658354 -178866224 + MIR SINE MIR 71 262 0 461 259 26 49 chr3 48658400 48658666 -178865912 - L1M4 LINE L1 -2923 3223 2964 872 260 99 71 chr3 48658687 48659156 -178865422 + MLT1G1 LTR MaLR 10 545 -50 1731 136 35 21 chr3 48659156 48659443 -178865135 - L1PB4 LINE L1 -1 6155 5865 872 260 99 71 chr3 48659443 48659496 -178865082 + MLT1G1 LTR MaLR 545 595 0 201 39 0 0 chr3 48659760 48659786 -178864792 + (TG)n Simple_repeat Simple_repeat 2 27 0 1659 156 85 3 chr3 48659830 48660170 -178864408 - Charlie1 DNA MER1_type -1 2760 2393 945 144 75 17 chr3 48660187 48660360 -178864218 - Charlie1 DNA MER1_type -800 1961 1779 1612 203 20 0 chr3 48660362 48660663 -178863915 + L1M4b LINE L1 12 318 -6541 2912 167 24 21 chr3 48660665 48661241 -178863337 + L1MB8 LINE L1 5323 5900 -284 868 98 53 0 chr3 48661244 48661377 -178863201 + L1MB8 LINE L1 6034 6173 -5 1772 130 111 28 chr3 48661382 48661706 -178862872 + L1PA16 LINE L1 5813 6163 -3 462 281 29 36 chr3 48661714 48661853 -178862725 + L2 LINE L2 3176 3313 0 2855 13 0 0 chr3 48662015 48662326 -178862252 - AluYb8 SINE Alu -7 311 1 749 285 5 10 chr3 48664597 48664797 -178859781 - MIR SINE MIR -3 259 61 289 333 18 27 chr3 48665036 48665147 -178859431 + MIR SINE MIR 31 140 -68 2269 114 7 0 chr3 48665586 48665893 -178858685 + AluSx SINE Alu 1 309 -3 4039 129 50 31 chr3 48666422 48666971 -178857607 + MER50 LTR ERV1 1 538 -196 208 0 62 0 chr3 48666971 48667003 -178857575 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 1817 145 0 0 chr3 48667007 48667283 -178857295 - AluSx SINE Alu -36 276 1 4039 129 50 31 chr3 48667283 48667426 -178857152 + MER50 LTR ERV1 540 711 -23 218 321 97 8 chr3 48667445 48667579 -178856999 - MER5A DNA MER1_type -1 188 43 * 319 319 65 0 chr3 48667468 48667606 -178856972 + MER5A DNA MER1_type 39 185 -4 2378 85 3 0 chr3 48667894 48668188 -178856390 - AluSp SINE Alu -18 295 1 450 0 0 0 chr3 48668343 48668393 -178856185 + (CA)n Simple_repeat Simple_repeat 2 51 0 224 217 57 9 chr3 48670567 48670587 -178853991 + (TA)n Simple_repeat Simple_repeat 2 20 -92 2164 113 0 10 chr3 48670587 48670888 -178853690 + AluSx SINE Alu 1 298 -14 224 217 57 9 chr3 48670888 48670973 -178853605 + (TA)n Simple_repeat Simple_repeat 20 112 0 258 136 0 0 chr3 48671384 48671428 -178853150 + (TA)n Simple_repeat Simple_repeat 1 44 0 856 302 153 24 chr3 48672984 48673666 -178850912 + L3 LINE CR1 711 1480 -97 944 211 126 24 chr3 48673880 48674174 -178850404 - L1ME1 LINE L1 -18 6148 5825 469 295 72 10 chr3 48674567 48674774 -178849804 - L1MC4a LINE L1 -329 5826 5648 186 260 0 20 chr3 48676795 48676845 -178847733 + L2 LINE L2 3223 3271 -1 1870 123 4 7 chr3 48677606 48677882 -178846696 - L1PA16 LINE L1 -9 6157 5883 234 284 101 74 chr3 48678722 48678870 -178845708 - MER5B DNA MER1_type -15 163 23 202 211 0 0 chr3 48678997 48679035 -178845543 + (CA)n Simple_repeat Simple_repeat 2 39 0 230 292 37 68 chr3 48681720 48681881 -178842697 + MIR3 SINE MIR 1 156 -52 273 343 114 0 chr3 48682006 48682111 -178842467 - MIR SINE MIR -62 146 30 227 385 0 0 chr3 48682468 48682551 -178842027 + (CA)n Simple_repeat Simple_repeat 2 84 0 256 167 74 19 chr3 48683625 48683679 -178840899 - MLT2B1 LTR ERVL 0 520 464 213 94 0 57 chr3 48683695 48683748 -178840830 + (TA)n Simple_repeat Simple_repeat 2 51 0 1662 187 9 28 chr3 48683750 48684076 -178840502 - MLT2B1 LTR ERVL -200 320 1 667 237 102 60 chr3 48684186 48684556 -178840022 + LTR16A1 LTR ERVL 75 474 -17 214 347 0 21 chr3 48685344 48685439 -178839139 + MIR SINE MIR 49 141 -67 985 207 45 0 chr3 48685485 48685683 -178838895 - MER3 DNA MER1_type -2 207 1 218 261 0 0 chr3 48685684 48685730 -178838848 + MIR3 SINE MIR 154 199 -9 10199 129 17 13 chr3 48687441 48688249 -178836329 + L1P LINE L1 3454 4258 -1888 2517 78 3 0 chr3 48688249 48688557 -178836021 - AluSx SINE Alu -3 309 1 10199 129 17 13 chr3 48688557 48689362 -178835216 + L1P LINE L1 4258 5073 -1073 5137 223 64 16 chr3 48689462 48690283 -178834295 + L1M4 LINE L1 3609 4522 -1624 2593 65 0 0 chr3 48690283 48690590 -178833988 + AluY SINE Alu 1 307 -4 5137 223 64 16 chr3 48690590 48691120 -178833458 + L1M4 LINE L1 4522 5025 -1121 1412 210 0 0 chr3 48691132 48691399 -178833179 + AluJb SINE Alu 23 289 -23 1646 195 51 23 chr3 48691412 48691803 -178832775 + L1M4 LINE L1 5028 5445 -739 2242 122 0 0 chr3 48691803 48692107 -178832471 + AluSx SINE Alu 1 304 -8 1646 195 51 23 chr3 48692107 48692347 -178832231 + L1M4 LINE L1 5445 5677 -507 21 0 0 0 chr3 48692492 48692513 -178832065 + AT_rich Low_complexity Low_complexity 1 21 0 2204 125 0 6 chr3 48692536 48692849 -178831729 + AluSx SINE Alu 1 311 -1 338 252 70 61 chr3 48692897 48693111 -178831467 + L1M4 LINE L1 4405 4620 -1526 475 286 14 0 chr3 48693785 48693925 -178830653 + L2 LINE L2 2182 2323 -991 331 286 67 0 chr3 48693996 48694101 -178830477 + L2 LINE L2 2827 2938 -375 304 321 75 19 chr3 48694114 48694273 -178830305 - L1MC4 LINE L1 0 8042 7875 401 275 63 34 chr3 48694273 48694557 -178830021 + L2 LINE L2 2924 3285 -28 241 128 0 0 chr3 48694560 48694599 -178829979 + MLT1J LTR MaLR 3 41 -470 932 154 50 91 chr3 48694608 48694828 -178829750 - MER34 LTR ERV1 0 542 332 1129 133 38 48 chr3 48694828 48695038 -178829540 + Tigger2 DNA MER2_type 1 208 -2510 990 132 13 44 chr3 48695035 48695194 -178829384 + Tigger2 DNA MER2_type 2564 2717 -1 * 1500 169 125 7 chr3 48695197 48695493 -178829085 - MER34 LTR ERV1 -211 331 1 580 277 6 34 chr3 48695494 48695671 -178828907 + MLT1J LTR MaLR 90 261 -250 587 282 48 19 chr3 48696934 48697143 -178827435 - Charlie8 DNA MER1_type -2201 216 2 490 309 52 34 chr3 48697625 48697916 -178826662 - L2 LINE L2 -214 3099 2804 212 266 31 31 chr3 48698276 48698340 -178826238 - L3 LINE CR1 -1327 250 187 2286 71 14 0 chr3 48699090 48699398 -178825180 - AluSp SINE Alu 0 312 1 316 148 161 12 chr3 48699404 48699485 -178825093 - MER53 DNA DNA -96 93 1 846 252 92 26 chr3 48699810 48699998 -178824580 - L1M4 LINE L1 -947 5199 5025 2170 142 45 31 chr3 48699998 48700357 -178824221 + THE1B LTR MaLR 1 364 0 846 252 92 26 chr3 48700357 48700460 -178824118 - L1M4 LINE L1 -1121 5025 4930 2152 130 3 3 chr3 48700460 48700767 -178823811 + AluSx SINE Alu 1 307 -5 846 252 92 26 chr3 48700767 48700823 -178823755 - L1M4 LINE L1 -1216 4930 4828 1570 233 74 43 chr3 48700827 48701459 -178823119 - L1M4 LINE L1 -1447 4699 4048 2046 110 116 25 chr3 48701509 48701589 -178822989 - MER4B LTR ERV1 -224 386 315 2314 98 0 16 chr3 48701589 48701904 -178822674 + AluSx SINE Alu 2 311 -1 2046 110 116 25 chr3 48701904 48702177 -178822401 - MER4B LTR ERV1 -295 315 1 355 174 198 0 chr3 48702178 48702264 -178822314 - L1M4 LINE L1 -2159 3987 3885 811 173 77 0 chr3 48702273 48702429 -178822149 + MLT1C LTR MaLR 1 168 -299 376 270 10 0 chr3 48702537 48702637 -178821941 - L1M4 LINE L1 -2473 3673 3573 * 1166 206 76 0 chr3 48702636 48702898 -178821680 - L1MB7 LINE L1 0 6184 5903 209 300 145 26 chr3 48703138 48703365 -178821213 - L2 LINE L2 -337 2977 2724 229 357 28 78 chr3 48704649 48704971 -178819607 + L2 LINE L2 2810 3115 -157 2253 106 10 3 chr3 48705118 48705420 -178819158 + AluSq SINE Alu 6 309 -4 330 258 86 25 chr3 48705571 48705734 -178818844 - MIR SINE MIR -12 250 78 757 209 123 14 chr3 48709069 48709280 -178815298 + MER106A DNA MER1_type 3 236 0 1567 189 18 11 chr3 48710575 48710855 -178813723 + AluJo SINE Alu 1 282 -30 189 0 0 0 chr3 48710860 48710881 -178813697 + (TAA)n Simple_repeat Simple_repeat 2 22 0 477 0 0 0 chr3 48710887 48710940 -178813638 + (CTA)n Simple_repeat Simple_repeat 1 53 0 509 241 147 77 chr3 48711003 48711380 -178813198 - MLT1J2 LTR MaLR 0 450 44 302 311 121 23 chr3 48714350 48714482 -178810096 - MIR SINE MIR -72 190 46 336 296 9 26 chr3 48714744 48714859 -178809719 + L2 LINE L2 3151 3263 -9 906 257 31 35 chr3 48715036 48715297 -178809281 - MIR SINE MIR -1 261 2 2004 282 119 52 chr3 48715427 48716944 -178807634 - L2 LINE L2 -19 3294 1683 1621 132 4 0 chr3 48716944 48717209 -178807369 + L1PA11 LINE L1 4972 5237 -909 6817 90 15 6 chr3 48717310 48718257 -178806321 + L1PA11 LINE L1 5218 6174 0 869 227 91 13 chr3 48718272 48718580 -178805998 - L2 LINE L2 -1619 1695 1364 358 276 184 32 chr3 48719803 48720020 -178804558 + MIR SINE MIR 1 250 -12 237 290 10 30 chr3 48721062 48721162 -178803416 - MIR SINE MIR -14 248 151 1905 156 0 22 chr3 48721230 48721544 -178803034 - AluJb SINE Alu -5 307 1 456 266 175 7 chr3 48722190 48722344 -178802234 - MER5A DNA MER1_type 0 189 10 662 268 78 25 chr3 48722808 48723051 -178801527 - MIR SINE MIR 0 262 7 234 0 0 0 chr3 48723855 48723881 -178800697 + (CA)n Simple_repeat Simple_repeat 2 27 0 208 336 28 0 chr3 48723883 48724026 -178800552 + (TA)n Simple_repeat Simple_repeat 2 148 0 204 231 0 0 chr3 48725159 48725211 -178799367 + (TA)n Simple_repeat Simple_repeat 2 53 0 2234 91 0 7 chr3 48725358 48725655 -178798923 - AluY SINE Alu -16 295 1 2307 143 50 46 chr3 48725666 48726164 -178798414 - L1MB7 LINE L1 0 6184 5685 1592 184 24 14 chr3 48726522 48726816 -178797762 + AluJb SINE Alu 1 297 -15 2156 107 3 7 chr3 48726817 48727117 -178797461 + AluSx SINE Alu 1 299 -13 29103 119 10 58 chr3 48727662 48733720 -178790858 + L1PA5 LINE L1 9 6357 203 9908 32 0 0 chr3 48733720 48735694 -178788884 + L1PA3 LINE L1 4180 6155 0 29103 119 10 58 chr3 48735694 48736076 -178788502 + L1PA5 LINE L1 6357 6756 602 346 79 32 0 chr3 48736076 48736139 -178788439 + (TAAAA)n Simple_repeat Simple_repeat 1 65 0 2909 71 11 0 chr3 48736139 48736520 -178788058 + L1PA7 LINE L1 5770 6154 0 29103 119 10 58 chr3 48736520 48736541 -178788037 + L1PA5 LINE L1 6133 6153 -1 1831 271 107 37 chr3 48737866 48738686 -178785892 + L2 LINE L2 26 903 -2411 1801 267 121 24 chr3 48738690 48739639 -178784939 + L2 LINE L2 2268 3310 -3 28 79 0 0 chr3 48740248 48740311 -178784267 + AT_rich Low_complexity Low_complexity 1 63 0 2334 115 0 0 chr3 48740392 48740705 -178783873 - AluSq SINE Alu 0 313 1 577 285 106 24 chr3 48741325 48741722 -178782856 + L1MC4 LINE L1 7260 7588 -373 564 135 45 0 chr3 48741743 48741832 -178782746 + AluJb SINE Alu 26 118 -194 324 80 0 20 chr3 48741835 48741885 -178782693 - 5S rRNA rRNA -71 50 2 2227 110 0 0 chr3 48741900 48742191 -178782387 - AluSx SINE Alu -21 291 1 921 192 18 0 chr3 48742208 48742375 -178782203 + AluJb SINE Alu 130 299 -13 229 216 0 0 chr3 48742805 48742856 -178781722 + FLAM_A SINE Alu 83 133 0 307 234 136 32 chr3 48742910 48743064 -178781514 + MER112 DNA MER1_type 89 258 -2 377 359 17 0 chr3 48743091 48743208 -178781370 - MIR3 SINE MIR -85 123 5 338 323 31 39 chr3 48743345 48743472 -178781106 + L2 LINE L2 3188 3313 0 1375 154 0 30 chr3 48744409 48744675 -178779903 - L1MA5A LINE L1 -10 6287 6030 22590 35 6 0 chr3 48744681 48748229 -178776349 - L1PA4 LINE L1 -2 6153 2590 1039 99 0 47 chr3 48748229 48748421 -178776157 - L1MA5A LINE L1 -271 6026 5844 225 310 112 83 chr3 48750745 48751058 -178773520 + L2 LINE L2 2951 3272 0 557 258 27 62 chr3 48751170 48751395 -178773183 + MIR SINE MIR 20 236 -26 1751 169 64 0 chr3 48751685 48752011 -178772567 - MER47A DNA MER2_type -19 347 1 516 268 49 19 chr3 48752376 48752581 -178771997 + L1MC4 LINE L1 6777 6987 -1055 2556 155 18 0 chr3 48752667 48753118 -178771460 + L1MB3 LINE L1 5725 6183 0 813 263 62 23 chr3 48753377 48753685 -178770893 + MER46C DNA MER2_type 17 336 -2 397 245 14 7 chr3 48753717 48753860 -178770718 + MER113 DNA MER1_type? 1 144 -377 659 242 81 9 chr3 48753880 48754103 -178770475 + MER113 DNA MER1_type? 277 515 -6 313 186 97 44 chr3 48754577 48754690 -178769888 + L1MC4 LINE L1 7077 7195 -847 1649 227 131 5 chr3 48754710 48755304 -178769274 + L1MC4 LINE L1 7360 8028 -14 2033 133 0 26 chr3 48755689 48755998 -178768580 - AluJo SINE Alu -11 301 1 1232 131 99 0 chr3 48756111 48756363 -178768215 - L1MA6 LINE L1 0 6300 6024 1603 192 77 6 chr3 48756369 48756873 -178767705 - L1M4 LINE L1 -561 5617 5051 1417 177 9 102 chr3 48756873 48757207 -178767371 - AluJo SINE Alu -5 307 5 1603 192 77 6 chr3 48757207 48757337 -178767241 - L1M4 LINE L1 -1127 5051 4932 * 3923 193 94 31 chr3 48757334 48758723 -178765855 - L1MD2 LINE L1 -8 6745 5270 5260 228 48 67 chr3 48759398 48759433 -178765145 - L1MD2 LINE L1 -1794 4746 4712 417 92 0 0 chr3 48759433 48759498 -178765080 - L1MA10 LINE L1 -14 6320 6256 5260 228 48 67 chr3 48759498 48760191 -178764387 - L1MD2 LINE L1 -1828 4712 4008 2212 92 4 4 chr3 48760191 48760472 -178764106 + AluSp SINE Alu 17 297 -16 5260 228 48 67 chr3 48760472 48761937 -178762641 - L1MD2 LINE L1 -2532 4008 2591 1772 182 7 76 chr3 48761937 48762360 -178762218 + MSTD LTR MaLR 1 394 -2 5260 228 48 67 chr3 48762360 48762381 -178762197 - L1MD2 LINE L1 -3949 2591 2571 5376 162 19 14 chr3 48762390 48763966 -178760612 - L1PA16 LINE L1 -9 6157 4560 675 156 24 36 chr3 48763968 48764135 -178760443 - L1MD2 LINE L1 -3959 2581 2417 719 269 52 25 chr3 48764189 48764475 -178760103 + L1ME4a LINE L1 57 350 -6046 853 246 8 13 chr3 48764535 48764626 -178759952 + L1ME4a LINE L1 3493 3583 -2632 180 0 0 0 chr3 48764626 48764646 -178759932 + (CAA)n Simple_repeat Simple_repeat 2 21 0 853 246 8 13 chr3 48764646 48764790 -178759788 + L1ME4a LINE L1 3583 3727 -2488 1169 158 0 16 chr3 48764896 48765109 -178759469 + AluSg/x SINE Alu 102 311 0 405 297 141 54 chr3 48765396 48765837 -178758741 - L1 LINE L1 -2139 4007 3529 567 266 86 51 chr3 48766579 48767063 -178757515 + L1ME4a LINE L1 5488 5973 -217 22895 165 27 17 chr3 48767539 48773878 -178750700 + L1PA10 LINE L1 3 6479 -4 1980 123 0 0 chr3 48775029 48775306 -178749272 + AluSc SINE Alu 1 277 -32 387 0 0 0 chr3 48775317 48775360 -178749218 + (TAA)n Simple_repeat Simple_repeat 2 44 0 411 272 87 46 chr3 48775412 48775585 -178748993 - MIR SINE MIR -20 242 63 2154 69 0 7 chr3 48775739 48776016 -178748562 - AluY SINE Alu 0 311 37 685 285 71 72 chr3 48777075 48777632 -178746946 + L1MC4a LINE L1 5264 5821 -1987 1502 133 99 64 chr3 48777632 48777690 -178746888 + MER46B DNA MER2_type 1 56 -2675 2379 58 0 10 chr3 48777690 48777983 -178746595 - AluY SINE Alu -21 290 1 1502 133 99 64 chr3 48777983 48778269 -178746309 + MER46B DNA MER2_type 56 232 -4 685 285 71 72 chr3 48778269 48778360 -178746218 + L1MC4a LINE L1 5821 5911 -1897 23 0 0 0 chr3 48778724 48778747 -178745831 + AT_rich Low_complexity Low_complexity 1 23 0 2062 130 0 3 chr3 48779626 48779910 -178744668 + AluSx SINE Alu 1 283 -29 243 0 0 0 chr3 48779913 48779940 -178744638 + (TAAA)n Simple_repeat Simple_repeat 4 30 0 2283 118 14 11 chr3 48779947 48780311 -178744267 + MER47A DNA MER2_type 1 365 -1 197 299 39 13 chr3 48780437 48780514 -178744064 - MIR3 SINE MIR -8 200 122 22 70 0 0 chr3 48782038 48782081 -178742497 + AT_rich Low_complexity Low_complexity 1 43 0 239 281 34 11 chr3 48782273 48782362 -178742216 - L2 LINE L2 0 3313 3223 1175 147 35 85 chr3 48782546 48782804 -178741774 + AluJo SINE Alu 57 301 -11 264 245 32 11 chr3 48782827 48782921 -178741657 + L1P LINE L1 3589 3684 -2462 189 107 0 0 chr3 48782933 48782961 -178741617 + (A)n Simple_repeat Simple_repeat 1 28 0 7413 221 72 44 chr3 48783556 48786068 -178738510 - L1M4 LINE L1 -1366 4780 2198 411 232 29 58 chr3 48786255 48786393 -178738185 - L1ME4a LINE L1 -4 6117 5984 659 237 13 0 chr3 48786413 48786565 -178738013 - Tigger6a DNA MER2_type -1 1082 929 808 199 28 0 chr3 48786570 48786711 -178737867 - FRAM SINE Alu -30 146 2 4726 190 24 15 chr3 48786713 48787640 -178736938 - Tigger6a DNA MER2_type -147 936 2 32 43 0 0 chr3 48787686 48787732 -178736846 + AT_rich Low_complexity Low_complexity 1 46 0 514 298 57 21 chr3 48787782 48788114 -178736464 - L1ME4a LINE L1 -244 5877 5534 333 301 68 34 chr3 48788125 48788301 -178736277 - L1ME4a LINE L1 -717 5445 5287 279 0 0 0 chr3 48788316 48788347 -178736231 + (TC)n Simple_repeat Simple_repeat 2 32 0 922 121 0 30 chr3 48788652 48788784 -178735794 + AluSg SINE Alu 1 128 -182 10766 31 0 2 chr3 48788784 48790873 -178733705 + L1PA4 LINE L1 4097 6183 0 1476 79 16 0 chr3 48790875 48791064 -178733514 + AluSg SINE Alu 115 306 -4 295 356 4 104 chr3 48792070 48792340 -178732238 - L2 LINE L2 -75 3197 2955 406 330 49 57 chr3 48792465 48792832 -178731746 - L2 LINE L2 -571 2743 2380 1902 112 0 103 chr3 48792832 48793172 -178731406 - AluSg1 SINE Alu -4 305 1 694 98 0 0 chr3 48793190 48793282 -178731296 - FLAM_C SINE Alu -16 127 36 305 286 31 0 chr3 48793282 48793380 -178731198 - L2 LINE L2 -927 2387 2287 31 44 0 0 chr3 48793717 48793762 -178730816 + AT_rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr3 48793983 48794014 -178730564 + AT_rich Low_complexity Low_complexity 1 31 0 325 295 114 47 chr3 48794482 48794675 -178729903 - L3b LINE CR1 -8 1575 1370 210 342 50 17 chr3 48795482 48795602 -178728976 - MIR3 SINE MIR -84 124 1 433 179 0 0 chr3 48795721 48795799 -178728779 - MER116 DNA Mariner -2 78 1 1732 173 0 29 chr3 48797119 48797432 -178727146 - AluJo SINE Alu -8 304 1 624 211 131 96 chr3 48797453 48797652 -178726926 - MIR SINE MIR -11 251 46 3023 36 0 0 chr3 48797786 48798145 -178726433 + L1PA5 LINE L1 5796 6154 0 985 133 0 0 chr3 48798213 48798348 -178726230 + AluSq/x SINE Alu 1 135 -177 6949 79 16 2 chr3 48798448 48799558 -178725020 - L1P2 LINE L1 -638 5516 4397 208 158 0 0 chr3 48799674 48799712 -178724866 - MIR SINE MIR -112 150 113 4775 158 45 4 chr3 48799909 48800845 -178723733 - L1 LINE L1 -1019 5127 4154 1859 122 4 19 chr3 48801008 48801271 -178723307 - AluSx SINE Alu -24 288 30 2030 135 0 0 chr3 48802217 48802513 -178722065 - AluSx SINE Alu -16 296 1 206 330 52 21 chr3 48802553 48802650 -178721928 - MIR SINE MIR -78 130 31 21 0 0 0 chr3 48802936 48802957 -178721621 + AT_rich Low_complexity Low_complexity 1 21 0 798 319 115 6 chr3 48804181 48804538 -178720040 - L2 LINE L2 -700 2614 2219 384 138 0 0 chr3 48804759 48804817 -178719761 + AluS SINE Alu 2 59 -244 2006 138 0 0 chr3 48805066 48805357 -178719221 - AluSg SINE Alu -19 291 1 2075 115 0 48 chr3 48805357 48805670 -178718908 - AluSx SINE Alu -14 298 1 258 360 45 9 chr3 48806765 48806876 -178717702 + L2 LINE L2 3122 3236 -36 21 0 0 0 chr3 48807093 48807114 -178717464 + AT_rich Low_complexity Low_complexity 1 21 0 370 269 62 56 chr3 48807114 48807274 -178717304 - MIR SINE MIR -64 198 38 316 303 161 12 chr3 48809661 48809823 -178714755 - MER5A DNA MER1_type -1 188 3 298 187 134 22 chr3 48811634 48811768 -178712810 - L1MC5 LINE L1 -185 7776 7628 371 217 57 38 chr3 48811774 48812033 -178712545 - L1MC5 LINE L1 -366 7595 7295 338 202 34 11 chr3 48812153 48812242 -178712336 - L1MC5 LINE L1 -899 7062 6972 730 269 214 6 chr3 48812343 48812670 -178711908 - L1MC4a LINE L1 -854 6954 6560 2532 224 89 52 chr3 48812714 48813549 -178711029 + L1ME2 LINE L1 4888 5770 -394 2018 132 7 3 chr3 48813549 48813845 -178710733 + AluSx SINE Alu 1 297 -15 2532 224 89 52 chr3 48813845 48814253 -178710325 + L1ME2 LINE L1 5770 6162 -2 180 216 0 0 chr3 48814350 48814387 -178710191 - L2 LINE L2 -19 3253 3217 3813 291 24 36 chr3 48814805 48816070 -178708508 + L1M3b LINE L1 17 1266 -5015 633 192 169 27 chr3 48816084 48816211 -178708367 + L1M3b LINE L1 1431 1539 -4742 213 39 0 0 chr3 48816211 48816237 -178708341 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 633 192 169 27 chr3 48816237 48816328 -178708250 + L1M3b LINE L1 1539 1680 -4601 198 0 0 0 chr3 48816328 48816350 -178708228 + (A)n Simple_repeat Simple_repeat 1 22 0 506 263 8 53 chr3 48816835 48817012 -178707566 + L1M3b LINE L1 3227 3390 -2960 2366 84 0 19 chr3 48817012 48817320 -178707258 - AluY SINE Alu 0 311 10 506 263 8 53 chr3 48817320 48817408 -178707170 + L1M3b LINE L1 3390 3480 -2870 * 704 209 23 6 chr3 48817402 48817574 -178707004 + L1MB7 LINE L1 5789 5963 -221 556 275 75 32 chr3 48818309 48818749 -178705829 - L1M4 LINE L1 -2678 3468 3010 333 259 143 9 chr3 48818751 48818863 -178705715 - MER5B DNA MER1_type -3 175 49 2965 200 67 48 chr3 48819422 48819646 -178704932 + L1ME1 LINE L1 5366 5584 -582 2404 68 0 16 chr3 48819646 48819956 -178704622 + AluY SINE Alu 1 305 -6 4292 147 12 54 chr3 48819960 48820817 -178703761 - L1MA7 LINE L1 -3 6288 5468 2965 200 67 48 chr3 48820817 48821366 -178703212 + L1ME1 LINE L1 5586 6159 -7 563 277 183 10 chr3 48822548 48822848 -178701730 + L2 LINE L2 2962 3313 0 286 284 78 28 chr3 48823403 48823544 -178701034 - MIR SINE MIR -108 154 7 772 216 91 21 chr3 48823576 48823817 -178700761 - L1ME3A LINE L1 -5 6165 5908 1267 235 49 53 chr3 48823953 48824485 -178700093 - L1M4 LINE L1 -1708 4438 3909 360 0 0 0 chr3 48825208 48825248 -178699330 + (TA)n Simple_repeat Simple_repeat 2 41 0 558 259 75 24 chr3 48825459 48825753 -178698825 + Charlie7 DNA MER1_type 294 602 -2010 198 0 0 0 chr3 48826069 48826091 -178698487 + (A)n Simple_repeat Simple_repeat 1 22 0 12503 198 59 28 chr3 48826490 48828751 -178695827 + L1MA7 LINE L1 2560 4750 -2960 2169 124 13 0 chr3 48828751 48829057 -178695521 + AluSx SINE Alu 1 310 -2 12503 198 59 28 chr3 48829057 48829844 -178694734 + L1MA7 LINE L1 4750 5511 -2199 2223 125 0 0 chr3 48829844 48830155 -178694423 + AluSx SINE Alu 1 311 -1 12503 198 59 28 chr3 48830155 48832087 -178692491 + L1MA7 LINE L1 5511 7704 -6 24 0 0 0 chr3 48832087 48832111 -178692467 + AT_rich Low_complexity Low_complexity 1 24 0 674 181 6 16 chr3 48832355 48832537 -178692041 + GA-rich Low_complexity Low_complexity 1 180 0 25 0 0 0 chr3 48833198 48833223 -178691355 + AT_rich Low_complexity Low_complexity 1 25 0 2472 80 0 0 chr3 48836393 48836695 -178687883 + AluY SINE Alu 3 304 -7 2133 144 40 80 chr3 48836858 48837128 -178687450 + Tigger2a DNA MER2_type 1 247 -2461 2715 105 11 0 chr3 48837128 48837499 -178687079 - THE1C LTR MaLR 0 375 1 2133 144 40 80 chr3 48837499 48837679 -178686899 + Tigger2a DNA MER2_type 247 433 -1 3131 144 52 17 chr3 48837812 48838011 -178686567 + MER41C LTR ERV1 1 191 -363 2850 7 0 0 chr3 48838011 48838321 -178686257 + AluYa5 SINE Alu 1 310 -1 3131 144 52 17 chr3 48838321 48838656 -178685922 + MER41C LTR ERV1 191 554 0 2255 128 26 28 chr3 48839330 48839758 -178684820 - L1MA3 LINE L1 0 6305 5879 1117 253 27 3 chr3 48839758 48840059 -178684519 - HAL1 LINE L1 -160 2347 2040 1482 156 145 61 chr3 48840097 48840489 -178684089 + MLT1D LTR MaLR 1 425 -80 409 284 97 45 chr3 48840832 48840906 -178683672 + MIR3 SINE MIR 16 85 -123 2620 55 0 0 chr3 48840906 48841217 -178683361 - AluY SINE Alu 0 311 1 409 284 97 45 chr3 48841217 48841318 -178683260 + MIR3 SINE MIR 85 200 -8 471 247 201 7 chr3 48841486 48841640 -178682938 - MIR SINE MIR 0 262 79 227 253 108 0 chr3 48842471 48842554 -178682024 + L2 LINE L2 1991 2082 -1232 264 236 56 14 chr3 48842685 48842757 -178681821 + L2 LINE L2 3237 3311 -2 1867 204 23 21 chr3 48842842 48843299 -178681279 - MER89 LTR ERV1 0 559 4 286 266 101 35 chr3 48843303 48843472 -178681106 + L1M4 LINE L1 4045 4224 -1922 263 314 82 42 chr3 48843599 48844003 -178680575 + L1M4 LINE L1 4413 4832 -1314 347 220 51 8 chr3 48844360 48844478 -178680100 + L1M4 LINE L1 5277 5399 -747 180 248 110 117 chr3 48844671 48844816 -178679762 - MIR SINE MIR -10 252 109 186 272 109 33 chr3 48847305 48847397 -178677181 + L2 LINE L2 3169 3267 -5 382 276 18 41 chr3 48847488 48847709 -178676869 + L1M4 LINE L1 4371 4586 -1560 24 32 0 0 chr3 48848146 48848177 -178676401 + AT_rich Low_complexity Low_complexity 1 31 0 5612 42 0 0 chr3 48848198 48848869 -178675709 - L1PA3 LINE L1 -2 6153 5483 28087 40 1 1 chr3 48848869 48852391 -178672187 + L1PA3 LINE L1 1964 5483 -743 851 281 83 74 chr3 48852700 48854083 -178670495 + L1MEc LINE L1 11 1388 -4827 1800 229 86 44 chr3 48854094 48854197 -178670381 + L1MEc LINE L1 2453 2550 -3665 959 199 25 0 chr3 48854197 48854358 -178670220 + FAM SINE Alu 1 165 -10 1800 229 86 44 chr3 48854358 48855020 -178669558 + L1MEc LINE L1 2550 3250 -2965 2448 70 0 0 chr3 48855277 48855578 -178669000 + AluSc SINE Alu 1 301 -8 248 265 108 29 chr3 48855638 48855740 -178668838 - MLT1J2 LTR MaLR -7 542 433 1393 156 55 21 chr3 48856193 48856482 -178668096 - L1MB7 LINE L1 -17 6167 5869 1798 157 0 27 chr3 48856546 48856845 -178667733 + AluSx SINE Alu 1 291 -21 980 84 0 0 chr3 48857344 48857475 -178667103 - L1PA14 LINE L1 -1 6160 6030 696 264 22 52 chr3 48858726 48858995 -178665583 + MIR SINE MIR 1 261 -1 225 303 73 37 chr3 48859217 48859326 -178665252 + MIR SINE MIR 123 235 -27 274 273 98 21 chr3 48860591 48860734 -178663844 + HAL1b LINE L1 242 395 -953 2105 105 7 7 chr3 48861367 48861682 -178662896 - AluSc SINE Alu 0 315 1 3538 168 48 6 chr3 48862056 48862771 -178661807 - L1MB8 LINE L1 -6 6172 5428 646 124 41 8 chr3 48862808 48862929 -178661649 - L1MB3 LINE L1 -2 6181 6057 223 311 0 56 chr3 48863032 48863122 -178661456 - L2 LINE L2 -1 3312 3228 2246 110 10 3 chr3 48863131 48863439 -178661139 + AluSx SINE Alu 1 310 -2 2091 122 0 46 chr3 48863899 48864226 -178660352 + AluSx SINE Alu 1 312 0 182 262 311 8 chr3 48864473 48864595 -178659983 + MIR SINE MIR 48 206 -56 431 276 151 20 chr3 48865102 48865301 -178659277 - MLT1J2 LTR MaLR -11 439 215 4552 171 17 16 chr3 48865341 48866306 -178658272 + L1MB4 LINE L1 5214 6180 0 385 352 69 36 chr3 48866935 48867355 -178657223 + L3 LINE CR1 1144 1577 0 284 293 38 23 chr3 48868376 48868413 -178656165 - MIR3 SINE MIR -8 200 165 457 96 96 0 chr3 48868413 48868486 -178656092 + MADE1 DNA Mariner 1 80 0 284 293 38 23 chr3 48868486 48868581 -178655997 - MIR3 SINE MIR -43 165 66 21 0 0 0 chr3 48868698 48868719 -178655859 + AT_rich Low_complexity Low_complexity 1 21 0 1510 189 24 54 chr3 48868723 48869093 -178655485 - MLT1A1 LTR MaLR -6 359 1 1495 145 15 36 chr3 48869096 48869367 -178655211 - L1MC/D LINE L1 -743 5403 5273 3410 81 34 10 chr3 48869367 48869864 -178654714 - L1MA1 LINE L1 -4 6298 5790 1495 145 15 36 chr3 48869864 48869949 -178654629 - L1MC/D LINE L1 -873 5273 5188 671 269 134 10 chr3 48869950 48870248 -178654330 - Charlie7 DNA MER1_type -356 2256 1922 774 249 83 8 chr3 48870264 48870505 -178654073 - L1ME3 LINE L1 -2 6160 5902 1324 165 44 26 chr3 48870509 48870781 -178653797 + THE1C LTR MaLR 1 277 -98 517 341 64 18 chr3 48871470 48871690 -178652888 + L3 LINE CR1 1302 1531 -46 180 317 49 37 chr3 48871692 48871774 -178652804 + MER5B DNA MER1_type 1 83 -95 992 279 94 49 chr3 48871903 48872348 -178652230 + L2 LINE L2 2828 3292 -21 888 212 12 6 chr3 48872389 48872554 -178652024 + MER58B DNA MER1_type 176 341 0 723 240 79 41 chr3 48872612 48873059 -178651519 + MLT1H LTR MaLR 1 549 0 22 0 0 0 chr3 48873060 48873082 -178651496 + AT_rich Low_complexity Low_complexity 1 22 0 724 270 56 14 chr3 48873284 48873499 -178651079 + MER58A DNA MER1_type 1 224 0 2438 57 3 0 chr3 48873565 48873861 -178650717 - AluY SINE Alu -14 297 1 524 224 81 6 chr3 48874421 48874595 -178649983 - HsTC2 DNA Tc2 0 1900 1714 488 260 102 30 chr3 48874733 48874968 -178649610 - HsTC2 DNA Tc2 -178 1720 1293 1039 266 80 80 chr3 48875634 48876112 -178648466 + L2 LINE L2 19 496 -2818 645 282 5 16 chr3 48876113 48876155 -178648423 - MER58A DNA MER1_type -2197 223 182 14728 133 28 56 chr3 48876155 48878950 -178645628 - Tigger2 DNA MER2_type 0 2718 1 645 282 5 16 chr3 48878950 48879095 -178645483 - MER58A DNA MER1_type -2238 182 38 226 313 100 53 chr3 48879111 48879261 -178645317 + L2 LINE L2 533 689 -2625 297 259 157 41 chr3 48879289 48879436 -178645142 - MER69A DNA AcHobo -10 167 4 582 257 161 43 chr3 48879871 48880454 -178644124 + Charlie7 DNA MER1_type 508 1159 -1453 960 158 16 0 chr3 48880462 48880645 -178643933 + L1PB4 LINE L1 15 200 -6663 12160 166 56 11 chr3 48880647 48883525 -178641053 + L1PB4 LINE L1 636 3839 -3023 2467 66 0 7 chr3 48883525 48883830 -178640748 + AluY SINE Alu 1 303 -8 12160 166 56 11 chr3 48883830 48886000 -178638578 + L1PB4 LINE L1 3839 5911 -951 2028 113 11 0 chr3 48886001 48886275 -178638303 + AluSc SINE Alu 1 277 -32 2379 100 6 0 chr3 48886284 48886614 -178637964 + L1PB1 LINE L1 5817 6148 -3 1781 185 67 0 chr3 48887150 48887557 -178637021 + L1PB4 LINE L1 6431 6996 -23 467 220 0 20 chr3 48887618 48887718 -178636860 + AluS SINE Alu 1 98 -215 6447 96 9 11 chr3 48887820 48888829 -178635749 - L1P LINE L1 -1804 4342 3336 465 241 79 10 chr3 48889552 48889755 -178634823 - L1ME LINE L1 -2631 4013 3797 * 4024 232 58 35 chr3 48889749 48891119 -178633459 - L1M4 LINE L1 -5122 1420 19 978 291 80 30 chr3 48891166 48892250 -178632328 - L1ME LINE L1 -4498 2146 1014 503 359 44 44 chr3 48892561 48892859 -178631719 - L1ME LINE L1 -5964 861 564 278 283 0 10 chr3 48892864 48892963 -178631615 - L1MEc LINE L1 -4848 1548 1451 312 300 36 21 chr3 48893080 48893220 -178631358 + L1 LINE L1 2678 2819 -3327 12796 198 34 54 chr3 48893224 48899650 -178624928 + L1MA4A LINE L1 2 6279 -726 2430 132 23 14 chr3 48899669 48900108 -178624470 - L1MA2 LINE L1 -10 6294 5852 3820 133 24 41 chr3 48900110 48900812 -178623766 + L1MA4A LINE L1 6310 6999 -6 5717 101 18 25 chr3 48901218 48902164 -178622414 + L1PA13 LINE L1 5222 6160 -3 1809 157 0 27 chr3 48902663 48902962 -178621616 - AluSx SINE Alu -21 291 1 1359 159 55 21 chr3 48903026 48903315 -178621263 + L1MB7 LINE L1 5869 6167 -17 1657 137 51 6 chr3 48903533 48904029 -178620549 + L1MA4A LINE L1 5068 5577 -726 2629 115 16 18 chr3 48904048 48904492 -178620086 - L1MA3 LINE L1 -11 6294 5852 3853 130 24 41 chr3 48904494 48905196 -178619382 + L1MA4A LINE L1 5608 6297 -6 365 296 71 84 chr3 48905422 48905602 -178618976 + L1MC4a LINE L1 3081 3262 -2884 5688 94 19 29 chr3 48905602 48906534 -178618044 + L1PA13 LINE L1 5222 6144 -19 365 296 71 84 chr3 48906534 48906841 -178617737 + L1MC4a LINE L1 3262 3561 -2585 2169 107 7 7 chr3 48906841 48907140 -178617438 - AluSc SINE Alu -10 299 1 365 296 71 84 chr3 48907140 48907256 -178617322 + L1MC4a LINE L1 3561 3677 -2469 357 275 53 36 chr3 48907275 48907581 -178616997 + L1MC4a LINE L1 3681 3991 -2155 21 36 0 0 chr3 48907745 48907773 -178616805 + AT_rich Low_complexity Low_complexity 1 28 0 1634 196 3 14 chr3 48907833 48908146 -178616432 + AluJo SINE Alu 1 310 0 227 287 7 28 chr3 48908203 48908346 -178616232 + L1MC4a LINE L1 4398 4537 -1609 * 988 270 41 6 chr3 48908344 48908659 -178615919 + L1MC4a LINE L1 5515 5840 -1968 2165 132 3 0 chr3 48908776 48909086 -178615492 + AluSx SINE Alu 1 311 -1 32467 81 5 6 chr3 48909230 48914790 -178609788 - L1PA4 LINE L1 -1 6154 606 2177 131 0 0 chr3 48914800 48915112 -178609466 - AluSq SINE Alu -1 312 1 2289 158 32 41 chr3 48915125 48915588 -178608990 + Tigger3(Golem) DNA MER2_type 2570 3028 -1 1607 197 88 15 chr3 48915715 48916111 -178608467 + MSTC LTR MaLR 4 428 0 225 289 11 0 chr3 48916123 48916213 -178608365 - HAL1 LINE L1 -171 2336 2246 22 70 0 0 chr3 48917187 48917230 -178607348 + AT_rich Low_complexity Low_complexity 1 43 0 332 232 0 37 chr3 48917247 48917329 -178607249 + MER96 DNA MER1_type? 6 84 -91 525 272 92 48 chr3 48917543 48917793 -178606785 - L2 LINE L2 -32 3281 3021 2297 75 3 57 chr3 48917797 48918115 -178606463 - AluSc SINE Alu -7 302 2 1133 176 39 4 chr3 48918176 48918431 -178606147 - L1MD3 LINE L1 -2 7993 7730 705 293 56 30 chr3 48918453 48918723 -178605855 - L2 LINE L2 -33 3280 3004 230 273 26 0 chr3 48918743 48918820 -178605758 - L1 LINE L1 -2371 3775 3697 3944 179 54 49 chr3 48918983 48919842 -178604736 - MER21B LTR ERV1 0 863 1 368 274 157 39 chr3 48920179 48920409 -178604169 + MLT1I LTR MaLR 31 287 -122 503 286 122 9 chr3 48922341 48922554 -178602024 - MIR SINE MIR -16 246 10 2259 73 0 21 chr3 48922849 48923136 -178601442 + AluY SINE Alu 18 298 -13 1349 119 21 0 chr3 48924338 48924560 -178600018 + AluSp SINE Alu 85 310 0 2412 83 0 16 chr3 48924885 48925199 -178599379 - AluY SINE Alu -2 309 1 197 305 95 11 chr3 48926727 48926822 -178597756 + L2 LINE L2 3143 3245 -27 193 322 0 17 chr3 48927624 48927683 -178596895 - MIR3 SINE MIR -13 195 138 2123 95 64 17 chr3 48927688 48928034 -178596544 - L1MA2 LINE L1 0 6304 5943 235 114 0 0 chr3 48928189 48928224 -178596354 - U2 snRNA snRNA -153 35 1 2637 23 3 0 chr3 48929835 48930137 -178594441 - AluY SINE Alu -8 303 1 29 0 0 0 chr3 48930713 48930742 -178593836 + AT_rich Low_complexity Low_complexity 1 29 0 195 231 0 39 chr3 48931156 48931208 -178593370 + MIR3 SINE MIR 153 202 -6 2136 132 41 39 chr3 48932357 48932720 -178591858 + THE1B LTR MaLR 1 364 0 1551 198 24 7 chr3 48934644 48934932 -178589646 - AluJb SINE Alu -19 293 1 4040 198 29 14 chr3 48935203 48937010 -178587568 + L1MB2 LINE L1 4340 6163 -8 486 216 254 4 chr3 48937021 48937253 -178587325 + L1MC5 LINE L1 7354 7643 -318 1754 228 61 42 chr3 48937253 48937776 -178586802 - MLT1E2 LTR MaLR -24 602 70 189 0 0 0 chr3 48938504 48938525 -178586053 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 180 263 230 33 chr3 48938759 48938911 -178585667 - MIR3 SINE MIR -2 206 25 446 292 93 69 chr3 48939382 48940326 -178584252 + L1MC4a LINE L1 36 1002 -5394 459 326 71 66 chr3 48940638 48940831 -178583747 + L1MC4a LINE L1 4210 4401 -1814 1646 192 3 18 chr3 48940831 48941145 -178583433 + AluJo SINE Alu 1 310 0 459 326 71 66 chr3 48941145 48941343 -178583235 + L1MC4a LINE L1 4401 4604 -1611 1005 264 41 6 chr3 48941343 48941658 -178582920 + L1MC4a LINE L1 5584 5909 -1968 2188 124 3 0 chr3 48941775 48942081 -178582497 + AluSx SINE Alu 1 307 -5 26627 37 1 1 chr3 48942230 48946421 -178578157 - L1PA4 LINE L1 -1 6154 1964 5611 42 0 0 chr3 48946421 48947092 -178577486 + L1PA3 LINE L1 5483 6153 -2 25 31 0 0 chr3 48947113 48947145 -178577433 + AT_rich Low_complexity Low_complexity 1 32 0 1118 32 7 0 chr3 48947757 48947911 -178576667 - L1P LINE L1 -743 5403 5249 * 3184 39 0 2 chr3 48947910 48948321 -178576257 + L1P LINE L1 4839 5248 -898 592 222 0 0 chr3 48948356 48948464 -178576114 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 1023 171 78 15 chr3 48948461 48948577 -178576001 + Tigger3(Golem) DNA MER2_type 2281 2388 -640 1287 194 14 38 chr3 48948577 48948701 -178575877 + AluJb SINE Alu 1 126 -186 218 32 32 0 chr3 48948701 48948732 -178575846 + (TAA)n Simple_repeat Simple_repeat 2 33 0 1287 194 14 38 chr3 48948732 48948932 -178575646 + AluJb SINE Alu 126 312 0 1023 171 78 15 chr3 48948932 48949084 -178575494 + Tigger3(Golem) DNA MER2_type 2388 2566 -462 31107 84 7 7 chr3 48949088 48954453 -178570125 - L1PA6 LINE L1 0 6154 792 981 111 0 7 chr3 48954566 48954710 -178569868 + AluSp/q SINE Alu 170 312 -1 31 58 0 0 chr3 48955372 48955424 -178569154 + AT_rich Low_complexity Low_complexity 1 52 0 182 239 0 30 chr3 48955791 48955858 -178568720 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 583 103 21 0 chr3 48955859 48955956 -178568622 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 24 39 0 0 chr3 48957291 48957317 -178567261 + AT_rich Low_complexity Low_complexity 1 26 0 2218 110 0 3 chr3 48957324 48957624 -178566954 + AluSx SINE Alu 1 299 -13 2841 159 6 4 chr3 48958275 48958789 -178565789 - L1MA7 LINE L1 -309 5982 5468 2058 213 75 7 chr3 48958794 48959340 -178565238 + L1ME1 LINE L1 5579 6161 -5 2313 81 0 16 chr3 48960098 48960408 -178564170 - AluY SINE Alu -6 305 1 973 180 69 5 chr3 48960416 48960633 -178563945 - L1ME LINE L1 -565 5599 5369 321 276 138 9 chr3 48961188 48961304 -178563274 + MER5B DNA MER1_type 48 178 0 473 272 84 17 chr3 48961329 48961734 -178562844 + L1M4 LINE L1 3028 3459 -2687 1019 209 119 17 chr3 48962239 48962541 -178562037 - MSTC LTR MaLR -92 336 4 2343 149 31 48 chr3 48962668 48963144 -178561434 - Tigger3(Golem) DNA MER2_type -1 3028 2561 2354 103 0 0 chr3 48963144 48963455 -178561123 + AluSq SINE Alu 1 311 -2 657 248 76 3 chr3 48963462 48963777 -178560801 + L1P LINE L1 606 943 -5203 189 0 0 0 chr3 48964728 48964749 -178559829 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 180 263 230 33 chr3 48964983 48965135 -178559443 - MIR3 SINE MIR -2 206 25 21 0 0 0 chr3 48965723 48965744 -178558834 + AT_rich Low_complexity Low_complexity 1 21 0 998 267 5 35 chr3 48966078 48966483 -178558095 - L1M2 LINE L1 -5205 1644 1252 31 108 0 0 chr3 48967063 48967192 -178557386 + AT_rich Low_complexity Low_complexity 1 129 0 612 249 104 10 chr3 48967280 48967473 -178557105 - MIR SINE MIR 0 262 52 1422 102 106 0 chr3 48967886 48968132 -178556446 - L1MA5A LINE L1 -5 6292 6021 708 217 42 101 chr3 48968634 48968920 -178555658 - MLT1B LTR MaLR 0 390 122 1133 288 124 30 chr3 48969074 48969540 -178555038 + L2 LINE L2 1051 1560 -1754 3723 64 12 0 chr3 48970347 48970829 -178553749 + L1PA4 LINE L1 5667 6154 -1 2260 109 7 0 chr3 48970850 48971152 -178553426 + AluSp SINE Alu 1 304 -9 1077 168 0 6 chr3 48971436 48971609 -178552969 - AluJo SINE Alu -140 172 1 2218 108 0 14 chr3 48973286 48973582 -178550996 - AluSx SINE Alu -20 292 1 394 327 159 5 chr3 48974716 48974936 -178549642 + L1ME LINE L1 5310 5563 -558 5214 135 53 11 chr3 48974942 48976058 -178548520 + L1MA8 LINE L1 5107 6268 -23 22 56 0 0 chr3 48976044 48976080 -178548498 + AT_rich Low_complexity Low_complexity 1 36 0 * 1436 49 11 0 chr3 48976233 48976416 -178548162 + L1PA3 LINE L1 5971 6155 0 2074 164 3 0 chr3 48976458 48976769 -178547809 - AluJb SINE Alu 0 312 1 341 324 102 0 chr3 48976786 48976962 -178547616 - MIR SINE MIR -20 242 49 437 237 23 23 chr3 48977344 48977475 -178547103 - Tigger6a DNA MER2_type -1 1082 952 1764 198 36 38 chr3 48977491 48977962 -178546616 + L1PBa LINE L1 6 475 -6388 1068 106 19 0 chr3 48977962 48978123 -178546455 + L1PB1 LINE L1 5988 6151 0 4092 157 67 52 chr3 48978146 48979093 -178545485 - Tigger6a DNA MER2_type -118 965 5 324 289 23 69 chr3 48979122 48979295 -178545283 + L1ME4a LINE L1 5954 6118 -3 1508 169 10 49 chr3 48979301 48979608 -178544970 + AluJb SINE Alu 1 295 -17 1539 187 18 21 chr3 48979807 48980116 -178544462 + AluJo SINE Alu 1 308 0 647 305 59 31 chr3 48980116 48980473 -178544105 - L2 LINE L2 -422 2892 2526 308 266 112 7 chr3 48980681 48980824 -178543754 - LTR33 LTR ERVL -25 496 339 241 316 50 14 chr3 48980823 48980962 -178543616 - LTR33 LTR ERVL -333 188 45 * 1947 303 161 34 chr3 48981013 48982385 -178542193 - L2 LINE L2 -1102 2212 667 523 246 39 0 chr3 48982427 48982557 -178542021 - MER20 DNA MER1_type -1 218 84 1344 205 44 33 chr3 48984358 48984719 -178539859 - MLT1D LTR MaLR -13 492 128 516 120 0 103 chr3 48984917 48985034 -178539544 - MLT1D LTR MaLR -519 107 3 2362 113 0 0 chr3 48985106 48985415 -178539163 - AluSx SINE Alu -2 310 2 288 297 76 27 chr3 48985758 48985943 -178538635 - L2 LINE L2 0 3313 3120 200 308 92 36 chr3 48986151 48986346 -178538232 + L2 LINE L2 3006 3211 -61 22 0 0 0 chr3 48986762 48986784 -178537794 + AT_rich Low_complexity Low_complexity 1 22 0 1814 238 34 51 chr3 48986899 48987463 -178537115 + L1MC3 LINE L1 7039 7592 -193 1665 198 10 10 chr3 48987463 48987756 -178536822 + AluJo SINE Alu 1 293 -19 824 164 39 7 chr3 48987756 48988015 -178536563 + GA-rich Low_complexity Low_complexity 1 267 0 539 228 34 0 chr3 48988037 48988186 -178536392 + L1MD3 LINE L1 7842 7995 0 1264 225 49 33 chr3 48988276 48989100 -178535478 + L1MDa LINE L1 2254 3086 -3454 429 242 46 26 chr3 48989207 48989360 -178535218 + L1MD2 LINE L1 6194 6349 -10 413 300 85 47 chr3 48989582 48989883 -178534695 - L2 LINE L2 -241 3072 2743 2642 243 49 19 chr3 48990707 48991850 -178532728 + L1MEc LINE L1 2128 3269 -2946 * 3150 147 46 4 chr3 48991849 48992699 -178531879 - L1MA5 LINE L1 -460 5840 4957 230 304 77 11 chr3 48993137 48993318 -178531260 + L1ME LINE L1 5625 5817 -304 580 250 116 19 chr3 48995013 48995229 -178529349 - MIR SINE MIR 0 262 26 255 234 112 9 chr3 48995286 48995393 -178529185 - L1ME LINE L1 -246 5875 5758 341 324 102 0 chr3 48995475 48995651 -178528927 + MIR SINE MIR 49 242 -20 2051 167 3 0 chr3 48995668 48995979 -178528599 + AluJb SINE Alu 1 312 0 42317 41 0 2 chr3 48996021 49002183 -178522395 - L1PA3 LINE L1 0 6155 2 198 263 0 38 chr3 49002434 49002514 -178522064 + L2 LINE L2 829 905 -2409 224 279 0 0 chr3 49002582 49002643 -178521935 + L2 LINE L2 1587 1647 -1667 1914 153 20 0 chr3 49002684 49002978 -178521600 + AluJb SINE Alu 1 300 -12 515 253 67 40 chr3 49002990 49003059 -178521519 - MER58A DNA MER1_type -185 156 90 7704 174 127 11 chr3 49003059 49004631 -178519947 + MER52A LTR ERV1 1 1755 0 515 253 67 40 chr3 49004631 49004711 -178519867 - MER58A DNA MER1_type -251 90 3 865 261 84 21 chr3 49004715 49005048 -178519530 + L2 LINE L2 1647 2000 -1314 405 269 60 68 chr3 49005106 49005355 -178519223 + L2 LINE L2 2992 3238 -75 189 0 0 0 chr3 49005387 49005408 -178519170 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 341 337 25 69 chr3 49006674 49006820 -178517758 + MIR3 SINE MIR 12 148 -60 2793 193 31 4 chr3 49006820 49007360 -178517218 + MER74A LTR ERVL 1 555 -3 341 337 25 69 chr3 49007360 49007415 -178517163 + MIR3 SINE MIR 148 204 -4 666 229 90 20 chr3 49007455 49007656 -178516922 - MER58C DNA MER1_type 0 215 1 949 119 0 0 chr3 49008863 49008989 -178515589 + AluJ SINE Alu 5 130 -182 2896 45 3 0 chr3 49009011 49009369 -178515209 + L1PA4 LINE L1 5793 6151 -4 711 241 0 0 chr3 49009385 49009522 -178515056 + AluJ SINE Alu 129 265 -47 357 241 0 13 chr3 49010125 49010204 -178514374 - MIR SINE MIR -107 155 78 2020 116 4 7 chr3 49011392 49011669 -178512909 + AluSg1 SINE Alu 22 297 -12 367 256 132 0 chr3 49011797 49011918 -178512660 + L1MC4a LINE L1 2693 2829 -3317 538 291 75 37 chr3 49011985 49012080 -178512498 + L1MC4a LINE L1 5514 5604 -2204 799 198 35 6 chr3 49012080 49012252 -178512326 - MER5B DNA MER1_type 0 178 2 538 291 75 37 chr3 49012252 49012558 -178512020 + L1MC4a LINE L1 5604 5930 -1878 279 0 0 0 chr3 49012562 49012593 -178511985 + (CA)n Simple_repeat Simple_repeat 2 32 0 29 28 0 0 chr3 49012691 49012727 -178511851 + AT_rich Low_complexity Low_complexity 1 36 0 546 229 13 26 chr3 49012777 49012930 -178511648 + L1ME1 LINE L1 6009 6159 -7 237 254 0 16 chr3 49012969 49013032 -178511546 + L1ME LINE L1 5521 5582 -588 276 294 46 0 chr3 49013094 49013203 -178511375 + L1ME LINE L1 5686 5799 -365 872 291 93 23 chr3 49013257 49013782 -178510796 + L1MC4a LINE L1 5321 5882 -1926 28 61 0 0 chr3 49013929 49013978 -178510600 + AT_rich Low_complexity Low_complexity 1 49 0 193 276 26 26 chr3 49015461 49015537 -178509041 + L2 LINE L2 2796 2871 -443 826 194 93 12 chr3 49015560 49015835 -178508743 - MER2 DNA MER2_type 0 345 14 1090 153 27 5 chr3 49016829 49017051 -178507527 - HsTC2 DNA Tc2 -11 1887 1661 448 192 69 54 chr3 49017048 49017178 -178507400 - HsTC2 DNA Tc2 -1764 134 3 * 277 309 52 37 chr3 49017225 49017361 -178507217 + L3b LINE CR1 1127 1264 -319 182 351 130 24 chr3 49017691 49017899 -178506679 + L3b LINE CR1 1345 1574 -9 237 197 0 79 chr3 49018444 49018520 -178506058 + 7SK RNA RNA 2 71 -122 230 326 11 11 chr3 49019127 49019219 -178505359 - MIR SINE MIR -68 140 49 26653 124 19 16 chr3 49019975 49026400 -178498178 + L1PA8 LINE L1 10 6486 -1 851 211 0 58 chr3 49026429 49026637 -178497941 - MER58A DNA MER1_type 0 224 29 2526 153 93 13 chr3 49027042 49027592 -178496986 + L1MA7 LINE L1 5696 6289 -2 773 183 15 6 chr3 49028361 49028544 -178496034 - L1MA7 LINE L1 -313 5853 5669 28 0 0 0 chr3 49029890 49029918 -178494660 + AT_rich Low_complexity Low_complexity 1 28 0 2393 64 10 7 chr3 49030154 49030450 -178494128 - AluY SINE Alu -14 297 1 191 256 80 102 chr3 49031502 49031678 -178492900 - L2 LINE L2 -423 2891 2720 394 204 45 11 chr3 49031751 49031839 -178492739 + MER5C DNA MER1_type 1 91 -233 2093 195 114 21 chr3 49031915 49032495 -178492083 + L1MC4a LINE L1 7168 7801 -7 364 238 74 25 chr3 49032505 49032627 -178491951 + MLT1G LTR MaLR 9 136 -454 1608 251 71 26 chr3 49032689 49033289 -178491289 - MLT1G LTR MaLR 0 590 1 1441 152 0 61 chr3 49033332 49033595 -178490983 + AluJb SINE Alu 1 247 -65 181 283 17 17 chr3 49033656 49033716 -178490862 - L2 LINE L2 -668 2646 2587 2570 189 35 46 chr3 49033716 49034345 -178490233 - MLT1E3 LTR MaLR 0 624 3 265 329 27 0 chr3 49036079 49036152 -178488426 - L2 LINE L2 -1 3312 3238 448 320 68 34 chr3 49036275 49036509 -178488069 - MIR SINE MIR 0 262 21 362 336 104 65 chr3 49036602 49036817 -178487761 - L2 LINE L2 -341 2973 2768 1492 236 21 3 chr3 49036817 49037148 -178487430 + MER58B DNA MER1_type 4 340 -1 362 336 104 65 chr3 49037148 49037459 -178487119 - L2 LINE L2 -546 2768 2426 303 235 191 43 chr3 49037509 49037640 -178486938 - MIR SINE MIR -12 250 89 4724 166 8 10 chr3 49037640 49038435 -178486143 + MER54B LTR ERVL 1 793 0 303 235 191 43 chr3 49038435 49038465 -178486113 - MIR SINE MIR -173 89 65 182 239 0 30 chr3 49039360 49039427 -178485151 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 583 103 21 0 chr3 49039428 49039525 -178485053 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 26 0 0 0 chr3 49040859 49040885 -178483693 + AT_rich Low_complexity Low_complexity 1 26 0 2403 84 0 0 chr3 49040892 49041190 -178483388 + AluSx SINE Alu 1 298 -14 668 245 27 5 chr3 49041686 49041870 -178482708 + HAL1 LINE L1 1562 1749 -758 448 255 58 85 chr3 49041987 49042175 -178482403 + MIR SINE MIR 72 254 -8 1648 218 56 68 chr3 49042180 49042749 -178481829 - MER68 LTR ERV1 0 562 1 1025 317 155 38 chr3 49043238 49044352 -178480226 + L2 LINE L2 1959 3200 -72 314 338 45 26 chr3 49044471 49044625 -178479953 + L2 LINE L2 3116 3272 0 545 302 155 10 chr3 49044985 49045386 -178479192 + L1MC4a LINE L1 5383 5841 -1967 252 0 0 0 chr3 49045596 49045624 -178478954 + (T)n Simple_repeat Simple_repeat 1 28 0 2259 98 0 19 chr3 49045733 49046051 -178478527 - AluSp SINE Alu -1 312 1 1003 290 88 26 chr3 49046053 49046636 -178477942 - L1MC4a LINE L1 -1869 5939 5321 276 294 46 0 chr3 49046690 49046799 -178477779 - L1ME LINE L1 -365 5799 5686 234 231 19 0 chr3 49046872 49046924 -178477654 - L1ME LINE L1 -2239 5569 5517 689 189 13 13 chr3 49046962 49047115 -178477463 - L1ME1 LINE L1 -5 6161 6009 32 26 0 0 chr3 49047168 49047207 -178477371 + AT_rich Low_complexity Low_complexity 1 39 0 230 211 144 0 chr3 49047382 49047472 -178477106 + L1MC4 LINE L1 6948 7050 -992 2541 154 29 43 chr3 49047472 49047516 -178477062 + MLT1D LTR MaLR 1 44 -461 7715 63 31 2 chr3 49047516 49048201 -178476377 + LTR13 LTR ERVK 1 724 -283 204 40 0 0 chr3 49048201 49048226 -178476352 + (TC)n Simple_repeat Simple_repeat 2 26 0 7715 63 31 2 chr3 49048226 49048519 -178476059 + LTR13 LTR ERVK 724 1007 0 2541 154 29 43 chr3 49048519 49048986 -178475592 + MLT1D LTR MaLR 44 505 0 602 191 0 0 chr3 49049055 49049160 -178475418 + Tigger3(Golem) DNA MER2_type 1 105 -2924 * 1272 128 55 31 chr3 49049157 49049446 -178475132 + Tigger3(Golem) DNA MER2_type 2274 2569 -460 875 178 0 63 chr3 49049456 49049630 -178474948 - AluJo SINE Alu -149 163 1 2511 128 66 2 chr3 49049631 49050069 -178474509 + Tigger3(Golem) DNA MER2_type 2564 3029 0 490 163 0 61 chr3 49050075 49050133 -178474445 + MER46A DNA MER2_type 1 52 -184 707 201 0 8 chr3 49050133 49050267 -178474311 - FLAM_A SINE Alu 0 133 1 490 163 0 61 chr3 49050267 49050306 -178474272 + MER46A DNA MER2_type 52 92 -144 1022 251 127 11 chr3 49050473 49050820 -178473758 - L1ME1 LINE L1 -289 5881 5495 334 305 111 61 chr3 49052117 49052461 -178472117 + L1MEd LINE L1 568 928 -5191 415 319 106 46 chr3 49052488 49053687 -178470891 + L1MEd LINE L1 911 2187 -3942 1955 139 52 0 chr3 49053720 49054007 -178470571 - AluSx SINE Alu -10 302 1 1568 266 73 16 chr3 49054028 49054403 -178470175 + L1MEd LINE L1 2201 2553 -3576 2323 102 3 6 chr3 49054403 49054716 -178469862 - AluSx SINE Alu 0 312 1 1568 266 73 16 chr3 49054716 49055240 -178469338 + L1MEd LINE L1 2553 3152 -2977 378 0 0 0 chr3 49055397 49055439 -178469139 + (CA)n Simple_repeat Simple_repeat 1 42 0 1126 165 23 23 chr3 49056113 49056331 -178468247 + MER20 DNA MER1_type 1 218 -1 1751 183 65 6 chr3 49056663 49057096 -178467482 + MER89 LTR ERV1 1 558 -1 7592 25 8 0 chr3 49057289 49058270 -178466308 + L1PA3 LINE L1 5165 6152 -3 32 26 0 0 chr3 49058270 49058309 -178466269 + AT_rich Low_complexity Low_complexity 1 39 0 3836 136 50 6 chr3 49058703 49059396 -178465182 + MER50 LTR ERV1 1 724 -10 2556 55 3 0 chr3 49059766 49060075 -178464503 - AluY SINE Alu -1 310 1 207 132 40 53 chr3 49060311 49060387 -178464191 + (TA)n Simple_repeat Simple_repeat 1 75 0 1992 254 101 60 chr3 49060999 49062084 -178462494 + L1MC4a LINE L1 5488 6617 -1191 1286 195 77 25 chr3 49062382 49062705 -178461873 + MER2 DNA MER2_type 2 341 -3 844 254 49 44 chr3 49062718 49062748 -178461830 + L1MC4 LINE L1 6652 6680 -1362 1622 183 57 26 chr3 49062748 49063098 -178461480 - MLT1A1 LTR MaLR 0 365 5 844 254 49 44 chr3 49063098 49063456 -178461122 + L1MC4 LINE L1 6680 7042 -1000 2358 199 17 14 chr3 49063578 49064060 -178460518 - MER77 LTR ERV1 -122 483 1 187 259 74 83 chr3 49064237 49064345 -178460233 + MER5A DNA MER1_type 81 187 -2 1670 183 3 35 chr3 49064469 49064780 -178459798 + AluJo SINE Alu 1 301 -11 1758 158 84 6 chr3 49065938 49066260 -178458318 + MER7A DNA MER2_type 1 345 -1 238 214 214 14 chr3 49066601 49066741 -178457837 + L1ME LINE L1 5267 5434 -730 1471 153 31 71 chr3 49066871 49067165 -178457413 - AluJo SINE Alu -30 282 1 317 303 37 16 chr3 49067165 49067353 -178457225 + L1ME LINE L1 5602 5793 -328 441 189 0 0 chr3 49068152 49068242 -178456336 + (TA)n Simple_repeat Simple_repeat 1 90 0 5513 143 40 18 chr3 49068708 49070446 -178454132 + L1MA4A LINE L1 4506 6289 -14 1881 168 0 10 chr3 49070451 49070748 -178453830 - AluJb SINE Alu -18 294 1 24 0 0 0 chr3 49070753 49070777 -178453801 + AT_rich Low_complexity Low_complexity 1 24 0 252 86 0 0 chr3 49071282 49071317 -178453261 + (TA)n Simple_repeat Simple_repeat 2 36 0 651 234 170 13 chr3 49071402 49071637 -178452941 + L2 LINE L2 3042 3313 0 1337 224 100 38 chr3 49072297 49072476 -178452102 + MLT1E2 LTR MaLR 178 344 -282 653 211 90 121 chr3 49072476 49072568 -178452010 + MLT1C LTR MaLR 5 98 -369 2370 91 0 0 chr3 49072568 49072865 -178451713 + AluSc SINE Alu 1 297 -12 653 211 90 121 chr3 49072865 49072916 -178451662 + MLT1C LTR MaLR 98 149 -318 2238 131 0 0 chr3 49072916 49073228 -178451350 + AluSx SINE Alu 1 312 0 653 211 90 121 chr3 49073228 49073561 -178451017 + MLT1C LTR MaLR 149 467 0 1337 224 100 38 chr3 49073561 49073800 -178450778 + MLT1E2 LTR MaLR 344 622 -4 220 394 21 21 chr3 49074241 49074335 -178450243 + L2 LINE L2 3157 3250 -22 1785 157 20 10 chr3 49074666 49074965 -178449613 - AluJb SINE Alu -9 303 2 2422 87 0 0 chr3 49075090 49075388 -178449190 - AluY SINE Alu -13 298 1 1189 241 116 34 chr3 49075504 49075935 -178448643 + MLT2B2 LTR ERVL 1 474 -41 441 0 0 0 chr3 49075935 49075984 -178448594 + (CA)n Simple_repeat Simple_repeat 2 50 0 1189 241 116 34 chr3 49075984 49076017 -178448561 + MLT2B2 LTR ERVL 474 503 -12 441 252 73 69 chr3 49076200 49076446 -178448132 + MLT1K LTR MaLR 342 588 0 218 221 124 80 chr3 49076821 49076934 -178447644 - MIR SINE MIR -11 251 134 491 271 44 6 chr3 49076999 49077161 -178447417 - MIR SINE MIR -10 252 84 707 226 0 0 chr3 49077637 49077770 -178446808 - FLAM_A SINE Alu 0 133 1 1596 120 27 4 chr3 49080782 49081040 -178443538 + LTR35 LTR ERV1 1 264 -354 497 119 60 12 chr3 49081039 49081123 -178443455 + LTR35 LTR ERV1 531 618 0 * 559 266 35 25 chr3 49081145 49081344 -178443234 + LTR35-int LTR ERV1 417 617 -5329 212 216 0 39 chr3 49081365 49081416 -178443162 + CT-rich Low_complexity Low_complexity 3 51 0 1114 186 13 83 chr3 49081780 49082081 -178442497 + LTR35-int LTR ERV1 1478 1757 -5780 992 188 56 16 chr3 49082083 49082407 -178442171 + LTR35-int LTR ERV1 355 1491 -4455 * 2433 148 22 73 chr3 49082404 49082957 -178441621 + LTR35-int LTR ERV1 768 1967 -2913 257 204 0 0 chr3 49082973 49083022 -178441556 + LTR35-int LTR ERV1 4689 4737 -61 3485 135 56 3 chr3 49083080 49083667 -178440911 + LTR35 LTR ERV1 1 618 0 233 158 35 0 chr3 49083752 49083809 -178440769 + (TATATG)n Simple_repeat Simple_repeat 1 59 0 270 218 11 23 chr3 49083840 49083927 -178440651 + L1MCa LINE L1 20 105 -6321 25 0 0 0 chr3 49084650 49084675 -178439903 + AT_rich Low_complexity Low_complexity 1 25 0 891 181 20 0 chr3 49084746 49084895 -178439683 + FRAM SINE Alu 1 152 -14 2299 108 0 0 chr3 49084902 49085197 -178439381 + AluSc SINE Alu 1 295 -14 22 35 0 0 chr3 49085197 49085226 -178439352 + AT_rich Low_complexity Low_complexity 1 29 0 294 224 0 0 chr3 49085226 49085293 -178439285 + Charlie4 DNA MER1_type 1877 1943 -18 195 351 76 23 chr3 49085793 49085924 -178438654 + L2 LINE L2 2940 3077 -195 725 187 0 8 chr3 49086082 49086205 -178438373 + FLAM_A SINE Alu 1 122 -11 25 0 0 0 chr3 49086768 49086793 -178437785 + AT_rich Low_complexity Low_complexity 1 25 0 21 71 0 0 chr3 49086897 49086939 -178437639 + AT_rich Low_complexity Low_complexity 1 42 0 1913 102 8 0 chr3 49086962 49087218 -178437360 - AluSp SINE Alu -19 294 37 337 97 28 0 chr3 49087808 49087880 -178436698 + (TA)n Simple_repeat Simple_repeat 2 75 0 2426 89 0 0 chr3 49088005 49088307 -178436271 + AluSx SINE Alu 1 302 -10 369 0 0 0 chr3 49088309 49088350 -178436228 + (TG)n Simple_repeat Simple_repeat 2 42 0 4318 138 39 92 chr3 49088695 49089009 -178435569 + L1MA8 LINE L1 5010 5339 -952 1724 174 17 3 chr3 49089009 49089308 -178435270 + AluJo SINE Alu 1 303 -9 4318 138 39 92 chr3 49089308 49090071 -178434507 + L1MA8 LINE L1 5339 6084 -207 477 162 0 0 chr3 49090071 49090145 -178434433 + AluSg/x SINE Alu 153 226 -86 4318 138 39 92 chr3 49090145 49090338 -178434240 + L1MA8 LINE L1 6084 6286 -5 265 242 134 20 chr3 49090506 49090655 -178433923 + L1ME4a LINE L1 5935 6100 -21 2320 98 0 0 chr3 49090849 49091144 -178433434 - AluSc SINE Alu -14 295 1 21 0 0 0 chr3 49091182 49091203 -178433375 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 49091599 49091623 -178432955 + AT_rich Low_complexity Low_complexity 1 24 0 293 200 67 0 chr3 49091747 49091822 -178432756 - L2 LINE L2 -1906 1408 1329 831 301 167 36 chr3 49091843 49091973 -178432605 - L2 LINE L2 -2090 1224 1112 2075 115 7 3 chr3 49091973 49092269 -178432309 + AluSx SINE Alu 3 299 -13 831 301 167 36 chr3 49092269 49092779 -178431799 - L2 LINE L2 -2202 1112 500 1883 163 3 7 chr3 49094068 49094374 -178430204 + AluJb SINE Alu 2 306 -6 27 0 0 0 chr3 49094588 49094615 -178429963 + AT_rich Low_complexity Low_complexity 1 27 0 948 89 0 0 chr3 49096205 49096328 -178428250 + AluSg/x SINE Alu 177 299 -13 30 0 0 0 chr3 49097262 49097292 -178427286 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr3 49097367 49097390 -178427188 + AT_rich Low_complexity Low_complexity 1 23 0 2175 96 0 7 chr3 49097391 49097673 -178426905 + AluSc SINE Alu 1 280 -29 369 0 0 0 chr3 49097676 49097717 -178426861 + (TAA)n Simple_repeat Simple_repeat 2 42 0 852 197 19 5 chr3 49098425 49098633 -178425945 + L1MA4A LINE L1 5912 6122 -181 493 174 0 0 chr3 49098637 49098729 -178425849 + L1MA4A LINE L1 6189 6280 -23 23 78 0 0 chr3 49098754 49098805 -178425773 + AT_rich Low_complexity Low_complexity 1 51 0 2097 117 0 13 chr3 49100436 49100734 -178423844 - AluSg SINE Alu -16 294 1 389 313 97 7 chr3 49101053 49101197 -178423381 + MIR SINE MIR 37 193 -69 2260 89 0 7 chr3 49101415 49101706 -178422872 + AluSp SINE Alu 1 289 -24 31 0 0 0 chr3 49101706 49101737 -178422841 + AT_rich Low_complexity Low_complexity 1 31 0 565 277 89 19 chr3 49101864 49102267 -178422311 - L1MC/D LINE L1 -556 5606 5352 349 210 17 4 chr3 49102317 49102422 -178422156 - L1MC/D LINE L1 -820 5350 5256 241 270 16 0 chr3 49102425 49102488 -178422090 + CT-rich Low_complexity Low_complexity 2 65 0 270 279 16 25 chr3 49102488 49102610 -178421968 - L1MC/D LINE L1 -1126 5020 4900 773 298 66 49 chr3 49102663 49103176 -178421402 + HAL1 LINE L1 351 872 -1635 1277 269 58 40 chr3 49103217 49103511 -178421067 - L1ME LINE L1 -346 5807 5520 2521 53 3 0 chr3 49103511 49103811 -178420767 + AluY SINE Alu 1 301 -10 1277 269 58 40 chr3 49103811 49104310 -178420268 - L1ME LINE L1 -633 5520 4996 388 266 64 29 chr3 49104534 49104915 -178419663 - L1MDb LINE L1 -5121 998 601 1292 171 37 118 chr3 49105695 49106016 -178418562 - AluYb8 SINE Alu -23 295 1 1663 289 255 18 chr3 49106342 49107257 -178417321 - L2 LINE L2 -1 3312 2111 1677 181 107 10 chr3 49107257 49107649 -178416929 - MSTB1 LTR MaLR 0 432 3 1663 289 255 18 chr3 49107649 49107817 -178416761 - L2 LINE L2 -1202 2111 1984 218 180 40 0 chr3 49107895 49107945 -178416633 + (TA)n Simple_repeat Simple_repeat 2 53 0 1713 283 11 25 chr3 49108045 49108596 -178415982 + L1MA6 LINE L1 6 548 -6620 416 302 1 6 chr3 49108824 49109001 -178415577 + L1MA6 LINE L1 1719 1897 -5271 9578 164 85 23 chr3 49109001 49112325 -178412253 + L1MA6 LINE L1 3792 7321 0 29 0 0 0 chr3 49112617 49112646 -178411932 + AT_rich Low_complexity Low_complexity 1 29 0 2346 96 0 10 chr3 49112793 49113105 -178411473 - AluSx SINE Alu -3 309 1 570 287 106 90 chr3 49113107 49113671 -178410907 - L2 LINE L2 -606 2708 2136 252 0 0 0 chr3 49114755 49114783 -178409795 + (TTA)n Simple_repeat Simple_repeat 3 30 0 7464 26 0 0 chr3 49114783 49116208 -178408370 - L1PA4 LINE L1 -18 6137 4706 3642 38 0 0 chr3 49116208 49116677 -178407901 + L1PA4 LINE L1 4267 4735 -1411 2145 88 24 0 chr3 49117033 49117330 -178407248 - AluY SINE Alu -7 304 1 204 97 0 0 chr3 49117751 49117782 -178406796 + (TATG)n Simple_repeat Simple_repeat 2 32 0 380 301 171 10 chr3 49117974 49118167 -178406411 - HAL1 LINE L1 -553 1954 1731 284 333 224 21 chr3 49118195 49118534 -178406044 - L2 LINE L2 -463 2851 2444 925 192 109 106 chr3 49118598 49118994 -178405584 - L1MC4 LINE L1 -56 7986 7590 270 338 155 14 chr3 49119867 49120086 -178404492 + MIR SINE MIR 13 262 0 929 132 41 30 chr3 49120536 49120733 -178403845 + THE1C LTR MaLR 1 199 -176 2063 171 32 44 chr3 49121252 49121335 -178403243 - Cheshire DNA MER1_type -47 2373 2291 1748 177 0 20 chr3 49121335 49121629 -178402949 - AluJb SINE Alu -24 288 1 2063 171 32 44 chr3 49121629 49122043 -178402535 - Cheshire DNA MER1_type -129 2291 1882 531 224 53 0 chr3 49122048 49122200 -178402378 - L1MEc LINE L1 -6200 196 37 225 281 0 0 chr3 49122332 49122396 -178402182 + A-rich Low_complexity Low_complexity 1 64 0 619 345 45 18 chr3 49122425 49122826 -178401752 + L2 LINE L2 2652 3070 -243 360 138 0 0 chr3 49123504 49123569 -178401009 + (TCCC)n Simple_repeat Simple_repeat 3 67 0 1813 128 128 0 chr3 49123571 49123845 -178400733 - AluSq SINE Alu -4 309 1 318 312 65 0 chr3 49124205 49124298 -178400280 + HAL1 LINE L1 45 143 -2364 1099 259 50 86 chr3 49124369 49124874 -178399704 - MLT1E3 LTR MaLR -60 564 81 2240 121 16 50 chr3 49124874 49125062 -178399516 - MER47A DNA MER2_type -1957 366 196 2170 125 0 0 chr3 49125062 49125358 -178399220 - AluSx SINE Alu -16 296 1 2240 121 16 50 chr3 49125358 49125548 -178399030 - MER47A DNA MER2_type -2127 196 1 1099 259 50 86 chr3 49125548 49125626 -178398952 - MLT1E3 LTR MaLR -543 81 2 509 270 94 43 chr3 49125629 49126003 -178398575 + L1MC4a LINE L1 5782 6174 -1634 286 217 11 43 chr3 49126228 49126412 -178398166 + (TATATG)n Simple_repeat Simple_repeat 3 180 0 1645 177 22 78 chr3 49126612 49127025 -178397553 - MLT1B LTR MaLR 0 390 1 462 288 31 70 chr3 49127033 49127262 -178397316 + L1MC4a LINE L1 6681 6900 -908 * 2145 230 62 50 chr3 49127256 49128185 -178396393 - L1MDa LINE L1 -854 5686 4746 456 305 26 85 chr3 49128194 49128499 -178396079 - L1M4 LINE L1 -1823 4323 4037 3955 267 70 55 chr3 49129330 49131731 -178392847 - L1MDa LINE L1 -1886 4654 1942 1559 114 0 0 chr3 49131731 49131941 -178392637 + AluSg/x SINE Alu 86 295 -15 3955 267 70 55 chr3 49131941 49133808 -178390770 - L1MDa LINE L1 -4598 1942 104 282 341 26 41 chr3 49133896 49134163 -178390415 + L1ME4a LINE L1 5521 5783 -2025 322 269 100 74 chr3 49134182 49134453 -178390125 + L1ME4a LINE L1 5837 6114 -7 28 29 0 0 chr3 49135342 49135377 -178389201 + AT_rich Low_complexity Low_complexity 1 35 0 252 250 108 33 chr3 49135381 49135501 -178389077 + L1P LINE L1 4920 5048 -1098 270 182 0 0 chr3 49135704 49135759 -178388819 + L1M LINE L1 5375 5429 -741 3171 310 101 26 chr3 49135781 49137452 -178387126 - ERVL LTR ERVL -1559 4205 2410 1278 206 29 0 chr3 49137617 49137860 -178386718 + MLT1A1 LTR MaLR 116 365 0 2921 227 96 22 chr3 49137994 49138163 -178386415 + L1ME1 LINE L1 3681 3836 -2330 2263 59 42 7 chr3 49138163 49138449 -178386129 + AluY SINE Alu 1 296 -15 2921 227 96 22 chr3 49138449 49140054 -178384524 + L1ME1 LINE L1 3836 5756 -410 1706 115 103 12 chr3 49140054 49140385 -178384193 + MER46B DNA MER2_type 1 236 0 2921 227 96 22 chr3 49140385 49140770 -178383808 + L1ME1 LINE L1 5756 6111 -55 26 74 0 0 chr3 49140784 49140838 -178383740 + AT_rich Low_complexity Low_complexity 1 54 0 277 110 73 29 chr3 49140838 49140974 -178383604 + (TA)n Simple_repeat Simple_repeat 2 143 0 315 341 98 6 chr3 49141180 49141353 -178383225 + L1 LINE L1 2633 2821 -3325 1724 163 0 27 chr3 49141362 49141662 -178382916 + AluJo SINE Alu 11 302 -10 839 124 35 0 chr3 49141775 49141920 -178382658 - L1MA3 LINE L1 -225 6080 5931 22 88 0 0 chr3 49141934 49141991 -178382587 + AT_rich Low_complexity Low_complexity 1 57 0 1706 148 44 68 chr3 49142011 49142214 -178382364 - THE1C LTR MaLR 0 375 184 2373 81 7 10 chr3 49142214 49142521 -178382057 - AluY SINE Alu -5 306 1 1706 148 44 68 chr3 49142521 49142701 -178381877 - THE1C LTR MaLR -191 184 1 537 280 118 29 chr3 49142767 49143046 -178381532 + L1 LINE L1 3013 3316 -2830 1410 240 42 0 chr3 49143086 49143440 -178381138 - L1ME3 LINE L1 -325 5837 5469 650 168 118 0 chr3 49144021 49144140 -178380438 + FLAM_C SINE Alu 1 133 -10 277 289 181 54 chr3 49144225 49144391 -178380187 + MIR SINE MIR 2 188 -74 5474 39 1 1 chr3 49144466 49145128 -178379450 + L1PA5 LINE L1 5493 6154 0 2223 110 0 0 chr3 49145547 49145837 -178378741 + AluSg1 SINE Alu 1 290 -19 342 235 111 20 chr3 49145875 49146001 -178378577 - MIR SINE MIR -10 252 114 911 127 0 158 chr3 49146249 49146477 -178378101 - 7SK RNA RNA -1 192 1 269 203 143 38 chr3 49147055 49147188 -178377390 - HAL1 LINE L1 -258 2249 2103 482 328 43 46 chr3 49147216 49147474 -178377104 + L1ME LINE L1 5458 5716 -405 2132 119 24 21 chr3 49147474 49147810 -178376768 + MER1B DNA MER1_type 1 337 0 482 328 43 46 chr3 49147810 49147874 -178376704 + L1ME LINE L1 5716 5779 -342 1147 228 47 26 chr3 49147963 49148328 -178376250 + MLT1G1 LTR MaLR 161 595 0 363 236 0 0 chr3 49148466 49148538 -178376040 - Tigger5 DNA MER2_type 0 2323 2252 227 296 0 0 chr3 49148509 49148563 -178376015 - Tigger5 DNA MER2_type -2269 54 1 * 2108 126 0 10 chr3 49150070 49150372 -178374206 - AluSx SINE Alu -13 299 1 19969 31 9 0 chr3 49151600 49154786 -178369792 + L1PA4 LINE L1 2958 6152 -3 32 57 0 0 chr3 49154787 49154840 -178369738 + AT_rich Low_complexity Low_complexity 1 53 0 2347 97 0 0 chr3 49154960 49155259 -178369319 - AluSx SINE Alu -13 299 1 356 305 127 19 chr3 49155337 49155885 -178368693 - L1ME3A LINE L1 -268 5902 5257 326 305 93 8 chr3 49156006 49156124 -178368454 + L1MC4a LINE L1 5737 5864 -1944 10555 29 0 0 chr3 49156143 49157418 -178367160 - L1HS LINE L1 -2155 3991 2717 11837 16 0 0 chr3 49157418 49159558 -178365020 + L1HS LINE L1 4015 6155 0 1206 199 17 47 chr3 49159577 49159873 -178364705 + AluJb SINE Alu 1 287 -25 41 0 0 0 chr3 49159911 49159952 -178364626 + AT_rich Low_complexity Low_complexity 1 41 0 239 275 33 8 chr3 49160519 49160657 -178363921 + (TAGA)n Simple_repeat Simple_repeat 1 141 0 1751 50 0 0 chr3 49160792 49160994 -178363584 + AluY SINE Alu 98 299 -12 322 222 76 42 chr3 49160995 49161139 -178363439 + L1MC5 LINE L1 7616 7764 -197 1237 123 0 0 chr3 49161283 49161462 -178363116 + AluSq SINE Alu 119 297 -16 240 186 72 41 chr3 49161467 49161564 -178363014 + L1MC5 LINE L1 7813 7912 -49 1937 160 7 0 chr3 49162764 49163058 -178361520 + AluSx SINE Alu 1 296 -16 597 250 0 0 chr3 49163065 49163181 -178361397 - FLAM_A SINE Alu -26 116 1 2174 100 10 0 chr3 49163661 49163950 -178360628 + AluSp SINE Alu 1 292 -21 545 262 173 38 chr3 49164618 49165011 -178359567 + L1ME4a LINE L1 5662 6107 -14 249 359 107 4 chr3 49165321 49165555 -178359023 + L2 LINE L2 2804 3061 -252 1847 144 20 7 chr3 49165828 49166126 -178358452 + AluJo SINE Alu 1 302 -10 23 68 0 0 chr3 49166136 49166180 -178358398 + AT_rich Low_complexity Low_complexity 1 44 0 2471 254 41 32 chr3 49166254 49167088 -178357490 + L1MDa LINE L1 34 1023 -5517 944 136 0 0 chr3 49167101 49167256 -178357322 + L1MB2 LINE L1 6014 6168 -3 25 31 0 0 chr3 49167346 49167378 -178357200 + AT_rich Low_complexity Low_complexity 1 32 0 2277 71 0 20 chr3 49167932 49168227 -178356351 + AluY SINE Alu 22 310 -1 312 262 48 48 chr3 49168241 49168367 -178356211 - MER103 DNA DNA -26 140 15 600 255 157 0 chr3 49168436 49168589 -178355989 - MER5A DNA MER1_type -6 183 7 854 261 57 4 chr3 49169699 49169929 -178354649 - MIR SINE MIR -3 259 18 554 31 0 0 chr3 49170681 49170746 -178353832 - AluY SINE Alu -190 121 57 1238 156 0 5 chr3 49170746 49170938 -178353640 - AluSx SINE Alu -121 191 1 2040 131 7 0 chr3 49172401 49172707 -178351871 + AluSq SINE Alu 1 308 -5 745 256 23 0 chr3 49173459 49173631 -178350947 - MER5A DNA MER1_type 0 189 14 750 291 179 20 chr3 49173778 49173892 -178350686 - L2 LINE L2 0 3313 3218 2258 109 10 0 chr3 49173892 49174195 -178350383 + AluSg SINE Alu 1 306 -4 750 291 179 20 chr3 49174195 49174551 -178350027 - L2 LINE L2 -95 3218 2770 415 303 72 81 chr3 49175197 49175517 -178349061 - L2 LINE L2 -554 2760 2444 1725 236 119 41 chr3 49175723 49175819 -178348759 + L1MC4 LINE L1 6460 6547 -1495 1887 156 3 10 chr3 49175819 49176121 -178348457 + AluSg SINE Alu 3 302 -8 1725 236 119 41 chr3 49176121 49176661 -178347917 + L1MC4 LINE L1 6547 7146 -896 621 225 51 0 chr3 49176700 49176838 -178347740 + MER58C DNA MER1_type 71 215 0 330 218 109 18 chr3 49176838 49176948 -178347630 + L1MC4a LINE L1 7058 7177 -631 * 442 243 34 7 chr3 49176937 49177085 -178347493 + L1MC4 LINE L1 7495 7646 -396 2098 140 0 3 chr3 49177085 49177474 -178347104 + AluSq SINE Alu 1 388 0 759 330 88 39 chr3 49178065 49178728 -178345850 - L2 LINE L2 -1387 1927 1233 1796 169 3 7 chr3 49179087 49179382 -178345196 + AluSx SINE Alu 1 294 -18 243 152 0 0 chr3 49180061 49180094 -178344484 + Alu SINE Alu 217 249 -53 3181 261 72 50 chr3 49180180 49181081 -178343497 + L1MEc LINE L1 498 1378 -5018 1728 195 0 3 chr3 49181081 49181389 -178343189 + AluJo SINE Alu 6 312 0 3181 261 72 50 chr3 49181389 49181813 -178342765 + L1MEc LINE L1 1378 1860 -4536 1605 201 3 7 chr3 49181813 49182107 -178342471 - AluJb SINE Alu -19 293 1 3181 261 72 50 chr3 49182107 49182238 -178342340 + L1MEc LINE L1 1860 1987 -4409 2222 97 0 24 chr3 49182393 49182691 -178341887 + AluSg SINE Alu 1 291 -19 581 186 73 0 chr3 49182739 49182863 -178341715 + L1MEc LINE L1 2680 2812 -3403 433 260 63 82 chr3 49182875 49182998 -178341580 + L1M4 LINE L1 4969 5093 -1053 21856 29 2 0 chr3 49182998 49186230 -178338348 - L1PA3 LINE L1 -5 6150 2915 433 260 63 82 chr3 49186230 49186375 -178338203 + L1M4 LINE L1 5093 5232 -914 1460 178 80 7 chr3 49186376 49186651 -178337927 + AluJb SINE Alu 3 297 -15 397 323 94 10 chr3 49186978 49187179 -178337399 + MIR SINE MIR 45 262 0 2314 97 3 0 chr3 49188394 49188703 -178335875 + AluSg SINE Alu 1 310 0 311 220 22 22 chr3 49188750 49188841 -178335737 - L1MEd LINE L1 -6027 92 2 391 301 154 33 chr3 49189009 49189398 -178335180 - L1M4 LINE L1 -1154 4992 4557 231 343 28 14 chr3 49189726 49189939 -178334639 - L1M4 LINE L1 -3090 3056 2841 836 141 0 56 chr3 49190040 49190182 -178334396 + AluJo SINE Alu 1 134 -178 256 177 62 83 chr3 49190184 49190280 -178334298 - L1MB3 LINE L1 -7 6176 6083 195 42 0 0 chr3 49190381 49190405 -178334173 + (TTTTA)n Simple_repeat Simple_repeat 5 28 0 1903 140 7 11 chr3 49190408 49190694 -178333884 - AluJo SINE Alu -27 285 1 1198 195 146 26 chr3 49190702 49190969 -178333609 - AluJo SINE Alu -3 299 1 21 36 0 0 chr3 49191095 49191123 -178333455 + AT_rich Low_complexity Low_complexity 1 28 0 279 232 176 16 chr3 49191186 49191311 -178333267 + MER103 DNA DNA 2 146 -20 1764 154 7 18 chr3 49191507 49191823 -178332755 + AluJb SINE Alu 1 313 0 215 327 0 0 chr3 49192046 49192101 -178332477 + MIR SINE MIR 21 75 -133 1476 123 78 12 chr3 49192579 49192823 -178331755 + L1PA10 LINE L1 5909 6168 0 394 278 125 49 chr3 49193844 49194416 -178330162 - L1M4 LINE L1 -3314 2832 2200 2271 101 0 0 chr3 49194416 49194703 -178329875 - AluSg SINE Alu -12 298 12 394 278 125 49 chr3 49194703 49194802 -178329776 - L1M4 LINE L1 -3946 2200 2110 316 313 56 0 chr3 49195281 49195476 -178329102 + L1ME LINE L1 4944 5149 -997 714 162 0 19 chr3 49195478 49195583 -178328995 + FLAM_A SINE Alu 4 106 -36 293 175 16 0 chr3 49195651 49195714 -178328864 + L1ME LINE L1 5135 5198 -948 208 225 0 0 chr3 49195720 49195760 -178328818 + (CA)n Simple_repeat Simple_repeat 1 40 0 615 254 40 52 chr3 49195912 49196042 -178328536 + L1ME LINE L1 5317 5444 -720 1413 168 116 0 chr3 49196042 49196310 -178328268 + AluJb SINE Alu 1 299 -13 615 254 40 52 chr3 49196310 49196427 -178328151 + L1ME LINE L1 5444 5561 -603 225 0 0 0 chr3 49196574 49196599 -178327979 + (TG)n Simple_repeat Simple_repeat 2 26 0 650 143 7 2 chr3 49196762 49196877 -178327701 - L1PA11 LINE L1 -337 5837 5720 2644 121 23 5 chr3 49196899 49197286 -178327292 + L1PA16 LINE L1 5764 6157 -9 2690 115 23 52 chr3 49197294 49197774 -178326804 + L1M1 LINE L1 5256 5721 -579 3574 134 67 9 chr3 49199728 49200309 -178324269 + L1PA16 LINE L1 5550 6164 -2 213 335 174 43 chr3 49200405 49201577 -178323001 + L2 LINE L2 793 2117 -1197 313 320 107 15 chr3 49201577 49201774 -178322804 + L2 LINE L2 2687 2901 -413 2072 130 0 28 chr3 49201905 49202227 -178322351 - AluSq SINE Alu 0 313 1 2409 70 7 3 chr3 49202231 49202530 -178322048 - AluY SINE Alu -11 300 1 522 284 118 28 chr3 49202543 49202942 -178321636 - L2 LINE L2 -135 3178 2743 2007 176 0 0 chr3 49203389 49203691 -178320887 + AluSx SINE Alu 1 302 -10 43681 48 5 1 chr3 49203691 49209813 -178314765 + L1PA4 LINE L1 4 6151 -4 594 261 97 17 chr3 49209870 49210108 -178314470 + L1ME1 LINE L1 5901 6157 -9 1632 147 16 8 chr3 49210510 49210808 -178313770 - AluJb SINE Alu 0 327 28 528 124 22 0 chr3 49210942 49211031 -178313547 + HSMAR2 DNA Mariner 1176 1266 -36 8964 105 8 15 chr3 49211041 49212796 -178311782 - L1PA8 LINE L1 0 6172 4416 2290 104 0 3 chr3 49212796 49213105 -178311473 - AluY SINE Alu -3 308 1 8964 105 8 15 chr3 49213105 49213408 -178311170 - L1PA8 LINE L1 -1756 4416 4113 41 58 0 0 chr3 49213528 49213597 -178310981 + AT_rich Low_complexity Low_complexity 1 69 0 25 0 0 0 chr3 49213780 49213805 -178310773 + AT_rich Low_complexity Low_complexity 1 25 0 307 258 0 45 chr3 49213809 49213898 -178310680 + L1M4 LINE L1 4513 4597 -1549 430 324 56 0 chr3 49213905 49214118 -178310460 + L1M4 LINE L1 4529 4753 -1393 1021 147 0 6 chr3 49214280 49214436 -178310142 + AluJb SINE Alu 10 164 -148 238 278 0 56 chr3 49214458 49214548 -178310030 + L1M4 LINE L1 4513 4597 -1549 880 167 0 0 chr3 49214597 49214735 -178309843 + AluJb SINE Alu 161 298 -14 1866 136 0 0 chr3 49215722 49215980 -178308598 - AluSg SINE Alu -52 258 1 226 305 68 8 chr3 49216013 49216131 -178308447 - MIR SINE MIR -85 177 53 265 248 181 0 chr3 49216494 49216599 -178307979 + MER5C DNA MER1_type 1 124 -200 1170 212 51 64 chr3 49216734 49217075 -178307503 - L1ME1 LINE L1 -5 6161 5824 2098 136 10 0 chr3 49217075 49217370 -178307208 - AluSx SINE Alu -14 298 1 1170 212 51 64 chr3 49217370 49217419 -178307159 - L1ME1 LINE L1 -342 5824 5776 260 241 0 0 chr3 49217581 49217635 -178306943 + MER116 DNA Mariner 7 60 -20 2228 165 57 20 chr3 49217653 49218198 -178306380 + L1MD1 LINE L1 2007 2571 -3969 525 233 20 7 chr3 49218181 49218327 -178306251 + L1MD1 LINE L1 2809 2956 -3584 * 1678 148 95 45 chr3 49218325 49218577 -178306001 + L1MA7 LINE L1 5887 6166 -125 2024 125 29 0 chr3 49218577 49218857 -178305721 + AluSg SINE Alu 1 288 -22 1678 148 95 45 chr3 49218857 49218983 -178305595 + L1MA7 LINE L1 6166 6284 -7 250 311 0 0 chr3 49219040 49219159 -178305419 + L1MD1 LINE L1 3728 3846 -2694 1655 226 33 14 chr3 49219159 49219650 -178304928 + L1MD1 LINE L1 4598 5097 -1443 1022 179 0 41 chr3 49219656 49219851 -178304727 + AluJo SINE Alu 1 187 -125 5756 113 46 34 chr3 49219854 49221663 -178302915 + SVA Other Other 1 1386 0 22 0 0 0 chr3 49221687 49221709 -178302869 + AT_rich Low_complexity Low_complexity 1 22 0 745 186 31 0 chr3 49221709 49221838 -178302740 + AluJo SINE Alu 177 309 -3 1398 231 23 30 chr3 49221853 49221904 -178302674 + L1MD1 LINE L1 5118 5168 -1372 2802 131 46 0 chr3 49221904 49222317 -178302261 + MSTB1 LTR MaLR 1 432 0 1398 231 23 30 chr3 49222317 49222659 -178301919 + L1MD1 LINE L1 5168 5508 -1032 1143 142 15 0 chr3 49222649 49222853 -178301725 + L1MD1 LINE L1 5721 5927 -709 * 3944 129 72 78 chr3 49222853 49224233 -178300345 - pTR5 LTR ERV1 0 2438 79 3139 174 22 62 chr3 49224233 49224471 -178300107 + L1MD1 LINE L1 5924 6170 -466 2566 44 3 0 chr3 49224471 49224767 -178299811 - AluY SINE Alu -14 297 1 3139 174 22 62 chr3 49224767 49225219 -178299359 + L1MD1 LINE L1 6170 6586 -50 470 87 0 12 chr3 49225241 49225313 -178299265 + MSTB1 LTR MaLR 4 63 -369 348 125 0 0 chr3 49225313 49225369 -178299209 + L1MD2 LINE L1 6303 6358 -1 205 125 0 71 chr3 49225754 49225810 -178298768 + (TAAAAA)n Simple_repeat Simple_repeat 2 53 0 2105 139 0 0 chr3 49226026 49226328 -178298250 + AluSx SINE Alu 1 302 -10 461 233 106 0 chr3 49228376 49228538 -178296040 + MLT1J2 LTR MaLR 33 225 -184 338 145 16 16 chr3 49228628 49228690 -178295888 + MLT1I LTR MaLR 346 407 -2 2201 183 10 20 chr3 49228922 49229322 -178295256 + L1MC1 LINE L1 5922 6317 -16 * 7815 37 9 0 chr3 49229321 49230495 -178294083 - L1PA4 LINE L1 -5 6150 4971 6088 26 0 0 chr3 49230488 49231194 -178293384 - L1PA4 LINE L1 -1902 4244 3539 4404 39 20 3 chr3 49231192 49231804 -178292774 + L1PA4 LINE L1 2931 3552 -2594 * 276 247 95 51 chr3 49231948 49232106 -178292472 + L1MEd LINE L1 6 170 -5949 1070 188 11 0 chr3 49232603 49232789 -178291789 - MER5A DNA MER1_type 0 189 2 472 276 16 0 chr3 49232792 49232915 -178291663 - MER5B DNA MER1_type -2 176 52 3659 179 30 12 chr3 49232920 49233653 -178290925 + MER49 LTR ERV1 178 923 0 395 302 53 40 chr3 49233805 49234030 -178290548 + HERVL LTR ERVL 1351 1578 -4076 234 0 0 0 chr3 49234453 49234479 -178290099 + (A)n Simple_repeat Simple_repeat 1 26 0 342 293 0 0 chr3 49235990 49236072 -178288506 + L1MC4 LINE L1 6622 6703 -1339 * 343 280 144 0 chr3 49236056 49236174 -178288404 - L1MC4 LINE L1 -1339 6703 6569 1216 197 0 13 chr3 49236197 49236430 -178288148 + AluJb SINE Alu 71 300 -12 204 271 148 52 chr3 49236628 49236783 -178287795 + L2 LINE L2 1178 1347 -1967 3405 179 24 31 chr3 49236803 49237641 -178286937 - L1 LINE L1 -2352 5213 4382 1980 139 7 7 chr3 49237647 49237957 -178286621 - AluSx SINE Alu -2 310 1 1675 156 64 41 chr3 49238015 49238310 -178286268 - AluJb SINE Alu -10 302 1 2061 131 0 38 chr3 49239153 49239473 -178285105 - AluSg SINE Alu -2 308 1 19032 155 41 25 chr3 49239479 49241326 -178283252 - L1 LINE L1 -3230 4335 2519 1819 140 52 0 chr3 49241326 49241612 -178282966 - AluJb SINE Alu -11 301 1 19032 155 41 25 chr3 49241612 49243850 -178280728 - L1 LINE L1 -5046 2519 178 414 0 0 0 chr3 49243850 49243896 -178280682 + (TTTTG)n Simple_repeat Simple_repeat 2 47 0 19032 155 41 25 chr3 49243896 49244061 -178280517 - L1 LINE L1 -7387 178 17 490 214 0 0 chr3 49244135 49244219 -178280359 + AluJ/FLAM SINE Alu 1 84 -228 2342 109 6 3 chr3 49244493 49244804 -178279774 + AluSx SINE Alu 1 312 0 396 325 117 7 chr3 49244805 49245103 -178279475 + L2 LINE L2 1782 2112 -1202 400 313 70 0 chr3 49245108 49245223 -178279355 + L2 LINE L2 3146 3268 -4 29 0 0 0 chr3 49245226 49245255 -178279323 + AT_rich Low_complexity Low_complexity 1 29 0 824 202 108 0 chr3 49245266 49245553 -178279025 + L1M4 LINE L1 4963 5280 -866 2350 119 9 6 chr3 49245836 49246172 -178278406 - MER1B DNA MER1_type 0 337 1 449 238 96 104 chr3 49246233 49246734 -178277844 - L1MEc LINE L1 -2598 3531 3035 621 271 0 7 chr3 49246748 49246888 -178277690 + MER5A DNA MER1_type 1 139 -50 1676 144 7 26 chr3 49246910 49247180 -178277398 - AluSx SINE Alu -47 265 1 313 180 49 16 chr3 49247183 49247244 -178277334 + MER5A DNA MER1_type 127 189 0 1560 254 92 49 chr3 49247247 49247986 -178276592 - L1MEc LINE L1 -3118 3011 2305 1825 145 3 33 chr3 49247986 49248290 -178276288 - AluSx SINE Alu -8 304 10 1560 254 92 49 chr3 49248290 49248502 -178276076 - L1MEc LINE L1 -3824 2305 2103 574 126 53 0 chr3 49248502 49248597 -178275981 - HY3 scRNA scRNA -1 100 1 1560 254 92 49 chr3 49248597 49248766 -178275812 - L1MEc LINE L1 -4026 2103 1886 1943 135 7 21 chr3 49248798 49249087 -178275491 + AluSx SINE Alu 5 289 -23 1052 297 97 29 chr3 49249178 49250013 -178274565 - L1MEc LINE L1 -4443 1867 976 778 217 118 146 chr3 49250011 49250330 -178274248 - L1MD2 LINE L1 -8 6349 5931 * 1992 137 77 8 chr3 49250330 49250681 -178273897 + THE1C LTR MaLR 1 375 0 778 217 118 146 chr3 49250681 49250827 -178273751 - L1MD2 LINE L1 -426 5931 5782 1038 246 92 3 chr3 49250907 49251440 -178273138 - L1MD2 LINE L1 -741 5618 5049 301 333 80 123 chr3 49252207 49252374 -178272204 - L1MEc LINE L1 -5536 583 437 2187 119 0 0 chr3 49252374 49252676 -178271902 + AluSg1 SINE Alu 1 302 -7 301 333 80 123 chr3 49252676 49252859 -178271719 - L1MEc LINE L1 -5682 437 248 259 309 0 0 chr3 49252944 49253038 -178271540 - L1MEc LINE L1 -5963 156 63 2129 129 7 7 chr3 49253045 49253355 -178271223 - AluSx SINE Alu -2 310 1 22 70 0 0 chr3 49253464 49253507 -178271071 + AT_rich Low_complexity Low_complexity 1 43 0 25 40 0 20 chr3 49254047 49254068 -178270510 + AT_rich Low_complexity Low_complexity 1 21 -28 1805 125 30 17 chr3 49254068 49254363 -178270215 + L1PB3 LINE L1 5855 6153 -1 25 40 0 20 chr3 49254363 49254391 -178270187 + AT_rich Low_complexity Low_complexity 21 49 0 1611 186 3 20 chr3 49254393 49254688 -178269890 + AluJo SINE Alu 1 290 -22 602 172 0 0 chr3 49254772 49254865 -178269713 + AluJo SINE Alu 1 93 -219 191 222 0 0 chr3 49254867 49254903 -178269675 + MIR SINE MIR 222 257 -5 1018 184 58 34 chr3 49254926 49255133 -178269445 + AluJo SINE Alu 82 293 -19 463 242 39 73 chr3 49255313 49255619 -178268959 + L1MC5 LINE L1 7228 7394 -414 1179 259 140 39 chr3 49255916 49256530 -178268048 + L1ME3A LINE L1 5487 6162 -8 1910 134 32 0 chr3 49256844 49257127 -178267451 - AluSx SINE Alu -20 292 1 229 162 0 0 chr3 49257344 49257381 -178267197 - Alu SINE Alu -265 37 1 281 223 78 10 chr3 49257384 49257487 -178267091 + L1ME4a LINE L1 6001 6110 -11 478 111 0 0 chr3 49257547 49257610 -178266968 + AluJ/FLAM SINE Alu 9 71 -241 2188 121 28 3 chr3 49257613 49257936 -178266642 + MER1B DNA MER1_type 3 333 -4 2215 178 12 2 chr3 49257958 49258375 -178266203 + LOR1b LTR ERV1 41 461 0 1082 191 23 23 chr3 49258383 49258603 -178265975 + AluJo SINE Alu 84 303 -9 24 0 0 0 chr3 49258625 49258649 -178265929 + AT_rich Low_complexity Low_complexity 1 24 0 1889 156 3 13 chr3 49258962 49259263 -178265315 - AluJo SINE Alu -14 298 1 1349 110 5 20 chr3 49259514 49259714 -178264864 + AluJb SINE Alu 116 312 0 647 168 28 151 chr3 49260015 49260172 -178264406 + Charlie5 DNA MER1_type 1 176 -2448 1873 175 0 0 chr3 49260172 49260469 -178264109 + AluSx SINE Alu 1 297 -15 2203 100 7 0 chr3 49260471 49260762 -178263816 + AluSp SINE Alu 1 293 -20 647 168 28 151 chr3 49260762 49260863 -178263715 + Charlie5 DNA MER1_type 177 289 -2335 2521 66 0 0 chr3 49260863 49261168 -178263410 + AluY SINE Alu 1 305 -6 647 168 28 151 chr3 49261168 49261277 -178263301 + Charlie5 DNA MER1_type 289 2624 0 1049 208 254 40 chr3 49261366 49261842 -178262736 + L2 LINE L2 1108 1685 -1629 763 169 48 0 chr3 49262252 49262376 -178262202 + AluSg/x SINE Alu 159 288 -24 285 282 64 0 chr3 49262421 49262531 -178262047 + L2 LINE L2 1710 1826 -1488 839 161 0 0 chr3 49262549 49262673 -178261905 - FLAM_C SINE Alu -19 124 1 496 291 116 5 chr3 49262673 49262862 -178261716 + L2 LINE L2 1824 2033 -1281 554 273 141 70 chr3 49263391 49263875 -178260703 + L2 LINE L2 2029 2546 -768 820 215 63 17 chr3 49263875 49264112 -178260466 + L1ME3A LINE L1 5916 6163 -7 920 221 75 26 chr3 49264122 49264429 -178260149 + L1ME2 LINE L1 5793 6114 -50 1986 66 62 0 chr3 49264975 49265232 -178259346 + AluY SINE Alu 1 273 -38 186 239 0 43 chr3 49265534 49265580 -178258998 + L2 LINE L2 3211 3254 -18 2080 129 0 3 chr3 49266098 49266393 -178258185 + AluSx SINE Alu 1 294 -18 187 300 0 0 chr3 49266393 49266433 -178258145 - MIR SINE MIR -20 242 203 295 190 0 0 chr3 49266457 49266515 -178258063 + L1M4 LINE L1 3737 3794 -2352 1682 146 67 0 chr3 49266652 49266919 -178257659 - AluJo SINE Alu -27 285 1 2244 102 0 10 chr3 49266976 49267269 -178257309 + AluSx SINE Alu 1 290 -22 275 321 0 24 chr3 49267497 49267581 -178256997 + L3b LINE CR1 1272 1353 -230 1826 180 3 3 chr3 49267782 49268093 -178256485 + AluSx SINE Alu 1 311 -1 216 0 0 0 chr3 49268426 49268450 -178256128 + (A)n Simple_repeat Simple_repeat 1 24 0 358 43 0 0 chr3 49268617 49268664 -178255914 - MADE1 DNA Mariner 0 80 34 528 283 105 11 chr3 49269306 49269497 -178255081 - L2 LINE L2 -1 3312 3104 387 194 14 0 chr3 49269548 49269620 -178254958 - MER33 DNA MER1_type -246 78 6 21 0 0 0 chr3 49271359 49271380 -178253198 + AT_rich Low_complexity Low_complexity 1 21 0 1069 179 20 10 chr3 49272096 49272292 -178252286 - AluJo SINE Alu -111 201 4 480 273 16 0 chr3 49272689 49272817 -178251761 + MER3 DNA MER1_type 1 130 -79 1888 162 17 0 chr3 49272829 49273119 -178251459 - AluSx SINE Alu -17 295 1 336 305 80 33 chr3 49273170 49273321 -178251257 + MIR SINE MIR 88 245 -17 22 0 0 0 chr3 49273332 49273354 -178251224 + AT_rich Low_complexity Low_complexity 1 22 0 222 274 118 39 chr3 49273409 49273511 -178251067 + L2 LINE L2 3156 3265 -48 2303 81 3 13 chr3 49273716 49274014 -178250564 - AluSg SINE Alu -15 295 1 258 304 115 52 chr3 49274245 49274436 -178250142 + MIR SINE MIR 4 206 -56 2264 88 3 14 chr3 49274681 49274977 -178249601 + AluSx SINE Alu 2 294 -18 806 193 6 77 chr3 49275022 49275203 -178249375 + AluJo SINE Alu 1 168 -144 202 182 0 36 chr3 49275253 49275308 -178249270 + A-rich Low_complexity Low_complexity 1 53 0 394 281 58 75 chr3 49276462 49276606 -178247972 + HAL1 LINE L1 1027 1172 -1335 1183 114 30 42 chr3 49276606 49276843 -178247735 + L1PA13 LINE L1 5925 6158 -5 2821 135 95 4 chr3 49276843 49277388 -178247190 + L1MB7 LINE L1 5570 6168 -16 394 281 58 75 chr3 49277388 49277520 -178247058 + HAL1 LINE L1 1170 1299 -1208 2135 125 7 0 chr3 49277539 49277836 -178246742 + AluSx SINE Alu 1 299 -13 984 148 42 21 chr3 49278018 49278484 -178246094 + L1MB4 LINE L1 5190 5863 -317 3324 134 0 6 chr3 49278484 49278984 -178245594 + LOR1a LTR ERV1 1 497 0 1143 159 42 8 chr3 49278984 49279223 -178245355 + L1MB4 LINE L1 5922 6168 -12 378 316 40 9 chr3 49279321 49279549 -178245029 + L1ME LINE L1 5485 5719 -402 290 243 0 14 chr3 49279986 49280056 -178244522 - MER8 DNA MER2_type -170 69 1 376 265 135 38 chr3 49280493 49280720 -178243858 - MIR SINE MIR -17 245 9 853 150 0 15 chr3 49281043 49281176 -178243402 + FLAM_C SINE Alu 2 132 -1 23 0 0 0 chr3 49281399 49281422 -178243156 + AT_rich Low_complexity Low_complexity 1 23 0 2356 99 3 0 chr3 49282164 49282468 -178242110 - AluSq SINE Alu -8 305 1 473 274 55 18 chr3 49284692 49284856 -178239722 - L2 LINE L2 0 3313 3144 424 183 24 12 chr3 49285084 49285166 -178239412 - U8 snRNA snRNA -50 86 4 659 244 13 0 chr3 49285166 49285322 -178239256 + L1MD3 LINE L1 7828 7985 -10 1689 81 45 9 chr3 49285414 49285636 -178238942 - MER30 DNA MER1_type 0 230 1 303 294 58 0 chr3 49286889 49287016 -178237562 - MIR SINE MIR -55 153 54 2567 68 0 3 chr3 49287084 49287394 -178237184 - AluY SINE Alu -2 309 1 2066 137 7 0 chr3 49287394 49287693 -178236885 - AluSx SINE Alu -11 301 1 2327 95 7 0 chr3 49288212 49288517 -178236061 + AluSg SINE Alu 1 307 -3 245 326 160 0 chr3 49288649 49288830 -178235748 + MIR SINE MIR 20 229 -33 294 304 43 0 chr3 49288878 49289016 -178235562 - L2 LINE L2 -619 2695 2552 2145 123 3 0 chr3 49289217 49289518 -178235060 + AluSq SINE Alu 1 302 -11 432 145 132 0 chr3 49289849 49289925 -178234653 + AluJ/FRAM SINE Alu 216 301 -11 1597 185 18 7 chr3 49290065 49290383 -178234195 + AluJb SINE Alu 1 321 0 4007 186 39 17 chr3 49290734 49291707 -178232871 + L1MB8 LINE L1 4463 5460 -724 1085 105 7 0 chr3 49291707 49291850 -178232728 + AluSq/x SINE Alu 1 144 -169 2602 46 0 0 chr3 49291850 49292152 -178232426 + AluY SINE Alu 1 302 -9 1646 195 0 14 chr3 49292157 49292454 -178232124 + AluJo SINE Alu 1 293 -19 1554 145 30 146 chr3 49292454 49292627 -178231951 + L1MB8 LINE L1 5598 5790 -388 2301 90 7 0 chr3 49292627 49292927 -178231651 + AluSc SINE Alu 1 302 -7 1554 145 30 146 chr3 49292927 49293207 -178231371 + L1MB8 LINE L1 5790 6084 -94 1658 170 0 11 chr3 49293207 49293490 -178231088 - AluJo SINE Alu -9 303 24 1554 145 30 146 chr3 49293490 49293575 -178231003 + L1MB8 LINE L1 6084 6177 -1 2272 105 0 0 chr3 49294363 49294658 -178229920 - AluSg SINE Alu -15 295 1 588 68 14 0 chr3 49294767 49294841 -178229737 - AluS SINE Alu -235 77 3 2021 136 16 7 chr3 49294964 49295273 -178229305 + AluSx SINE Alu 1 312 0 1224 218 29 0 chr3 49295385 49295624 -178228954 + AluJb SINE Alu 51 296 -16 860 134 0 0 chr3 49296518 49296637 -178227941 + FLAM_C SINE Alu 1 119 -24 28 29 0 0 chr3 49296644 49296679 -178227899 + AT_rich Low_complexity Low_complexity 1 35 0 1936 171 0 3 chr3 49296693 49296997 -178227581 + AluJb SINE Alu 1 303 -9 321 315 22 0 chr3 49297045 49297137 -178227441 - MLT1I LTR MaLR -214 195 102 2350 70 0 0 chr3 49297389 49297675 -178226903 - AluY SINE Alu -24 287 2 1813 175 0 0 chr3 49297834 49298114 -178226464 + AluJb SINE Alu 3 282 -30 227 316 51 10 chr3 49298197 49298295 -178226283 + MARNA DNA Mariner 275 376 -210 454 308 126 45 chr3 49298497 49298886 -178225692 + L1ME4a LINE L1 5412 5843 -278 1847 116 34 4 chr3 49298886 49299154 -178225424 + AluSx SINE Alu 1 276 -36 454 308 126 45 chr3 49299154 49299209 -178225369 + L1ME4a LINE L1 5843 5892 -229 23 0 0 0 chr3 49299427 49299450 -178225128 + AT_rich Low_complexity Low_complexity 1 23 0 1711 172 0 30 chr3 49300552 49300849 -178223729 - AluJb SINE Alu -24 288 1 2116 135 0 0 chr3 49300856 49301159 -178223419 - AluSq SINE Alu -10 303 1 899 201 6 6 chr3 49301384 49301558 -178223020 + AluJo SINE Alu 12 185 -127 2112 83 3 28 chr3 49301851 49302187 -178222391 + AluSg SINE Alu 1 329 0 2401 87 0 3 chr3 49302744 49303053 -178221525 - AluY SINE Alu -3 308 1 1956 149 0 0 chr3 49303472 49303768 -178220810 + AluSx SINE Alu 1 296 -16 753 279 148 17 chr3 49304229 49304573 -178220005 - MLT1I LTR MaLR -4 405 17 237 277 54 77 chr3 49304648 49304778 -178219800 - MIR SINE MIR -61 147 21 195 281 35 0 chr3 49305063 49305120 -178219458 + L2 LINE L2 3255 3313 0 1910 141 3 0 chr3 49305195 49305478 -178219100 + AluSq SINE Alu 14 297 -16 2242 77 0 14 chr3 49305482 49305788 -178218790 + AluY SINE Alu 1 302 0 2011 129 3 16 chr3 49306024 49306335 -178218243 + AluSx SINE Alu 1 307 -5 1200 219 12 8 chr3 49306358 49306605 -178217973 + AluJo SINE Alu 1 248 -64 238 191 21 0 chr3 49306609 49306656 -178217922 + GA-rich Low_complexity Low_complexity 3 50 0 560 296 91 77 chr3 49306813 49307042 -178217536 - LTR16B LTR ERVL -2 462 238 2110 126 19 7 chr3 49307042 49307351 -178217227 + AluSq SINE Alu 1 313 0 560 296 91 77 chr3 49307351 49307369 -178217209 - LTR16B LTR ERVL -226 238 222 2205 127 3 0 chr3 49307369 49307668 -178216910 + AluSx SINE Alu 1 300 -12 560 296 91 77 chr3 49307668 49307871 -178216707 - LTR16B LTR ERVL -242 222 5 32370 107 15 51 chr3 49309263 49315641 -178208937 + L1PA7 LINE L1 12 6153 -1 247 176 39 0 chr3 49315669 49315720 -178208858 - L2 LINE L2 -2 3311 3259 22 35 0 0 chr3 49316329 49316358 -178208220 + AT_rich Low_complexity Low_complexity 1 29 0 762 285 57 18 chr3 49316534 49316762 -178207816 + MIR SINE MIR 8 244 -18 2043 143 7 0 chr3 49316914 49317215 -178207363 + AluSx SINE Alu 1 303 -9 835 173 74 6 chr3 49317282 49317444 -178207134 - MER5A DNA MER1_type 0 189 17 662 161 14 166 chr3 49317447 49317658 -178206920 - MER58A DNA MER1_type 0 224 46 277 187 67 164 chr3 49317779 49317913 -178206665 + Cheshire DNA MER1_type 7 127 -2293 2064 121 40 0 chr3 49317920 49318217 -178206361 + AluSx SINE Alu 1 309 -3 842 203 45 45 chr3 49318220 49318442 -178206136 + Cheshire DNA MER1_type 70 291 -2129 346 317 55 47 chr3 49318641 49318859 -178205719 - MIR SINE MIR -1 261 37 2093 82 15 100 chr3 49319170 49319368 -178205210 - AluSx SINE Alu -9 303 143 2285 96 3 16 chr3 49319368 49319681 -178204897 - AluSc SINE Alu 0 309 1 2093 82 15 100 chr3 49319681 49319813 -178204765 - AluSx SINE Alu -169 143 1 3842 98 44 11 chr3 49320652 49321215 -178203363 + L1MA2 LINE L1 5722 6303 -1 227 314 76 0 chr3 49322403 49322521 -178202057 + L1ME LINE L1 5729 5855 -266 1940 141 0 13 chr3 49322546 49322852 -178201726 + AluSx SINE Alu 1 302 -10 2362 95 3 0 chr3 49323314 49323610 -178200968 - AluSx SINE Alu -15 297 1 287 258 0 0 chr3 49323611 49323673 -178200905 + L2 LINE L2 1424 1485 -1829 451 307 57 0 chr3 49323781 49323921 -178200657 - HERVL LTR ERVL -3156 2498 2351 2000 126 3 3 chr3 49323922 49324216 -178200362 + AluSq SINE Alu 1 294 -19 25 31 0 0 chr3 49324228 49324260 -178200318 + AT_rich Low_complexity Low_complexity 1 32 0 1833 138 3 17 chr3 49324371 49324690 -178199888 - AluSx SINE Alu 0 315 1 421 91 0 0 chr3 49324845 49324900 -178199678 - Alu SINE Alu -17 293 239 21 0 0 0 chr3 49325018 49325039 -178199539 + AT_rich Low_complexity Low_complexity 1 21 0 703 200 22 76 chr3 49325334 49325378 -178199200 + MER5B DNA MER1_type 1 46 -132 2361 56 42 0 chr3 49325378 49325666 -178198912 - AluY SINE Alu -11 300 1 703 200 22 76 chr3 49325666 49325806 -178198772 + MER5B DNA MER1_type 46 175 -3 2082 128 0 0 chr3 49325828 49326118 -178198460 - AluSx SINE Alu -21 291 2 432 195 0 23 chr3 49326347 49326434 -178198144 + AluJo SINE Alu 82 166 -146 898 210 47 67 chr3 49326534 49326635 -178197943 - MLT1C LTR MaLR -173 294 192 2470 76 0 3 chr3 49326635 49326938 -178197640 - AluY SINE Alu -9 302 1 898 210 47 67 chr3 49326938 49326953 -178197625 - MLT1C LTR MaLR -275 192 178 2023 95 25 11 chr3 49326953 49327237 -178197341 - AluSp SINE Alu -24 289 2 1829 156 7 0 chr3 49327244 49327520 -178197058 - AluSx SINE Alu -32 280 3 898 210 47 67 chr3 49327520 49327694 -178196884 - MLT1C LTR MaLR -295 172 1 2014 135 0 10 chr3 49327919 49328222 -178196356 - AluJb SINE Alu -12 300 1 375 316 90 0 chr3 49328353 49328508 -178196070 + MIR SINE MIR 50 218 -44 1950 139 3 14 chr3 49328509 49328835 -178195743 + AluSx SINE Alu 1 323 0 207 175 50 0 chr3 49328853 49328893 -178195685 + MIR SINE MIR 210 251 -11 1535 158 29 55 chr3 49328926 49329237 -178195341 + AluJo SINE Alu 1 303 -9 24 0 0 0 chr3 49329259 49329283 -178195295 + AT_rich Low_complexity Low_complexity 1 24 0 2230 103 3 0 chr3 49329559 49329849 -178194729 + AluSq SINE Alu 3 293 -20 189 0 0 0 chr3 49329939 49329960 -178194618 + (A)n Simple_repeat Simple_repeat 1 21 0 1050 242 40 84 chr3 49329965 49330522 -178194056 + L1MC5 LINE L1 6689 7220 -741 189 0 0 0 chr3 49330533 49330554 -178194024 + (A)n Simple_repeat Simple_repeat 1 21 0 686 220 150 93 chr3 49330766 49331367 -178193211 + L1MC5 LINE L1 7297 7931 -30 216 0 0 0 chr3 49331494 49331518 -178193060 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1207 196 8 11 chr3 49332299 49332564 -178192014 + L1MA4A LINE L1 5821 6084 -219 1028 124 154 5 chr3 49332997 49333198 -178191380 + L1MB7 LINE L1 5938 6168 -16 2277 92 3 0 chr3 49333349 49333652 -178190926 + AluSx SINE Alu 1 304 -8 464 139 0 70 chr3 49333667 49333854 -178190724 + (GGGA)n Simple_repeat Simple_repeat 2 175 0 * 563 242 0 10 chr3 49333838 49334148 -178190430 + GA-rich Low_complexity Low_complexity 1 306 0 299 152 0 0 chr3 49334257 49334303 -178190275 - Alu SINE Alu -256 46 1 1645 110 121 8 chr3 49334500 49334764 -178189814 + AluSg1 SINE Alu 1 294 -15 390 294 0 0 chr3 49334764 49334849 -178189729 + L1MC4 LINE L1 6612 6699 -1343 4333 176 44 38 chr3 49334849 49336037 -178188541 - L1MB3 LINE L1 -8 6175 4969 1842 195 29 6 chr3 49336049 49336398 -178188180 - MLT1A1 LTR MaLR -8 357 1 1958 223 10 68 chr3 49336399 49336900 -178187678 - L1MB3 LINE L1 -1182 4964 4504 2414 69 0 3 chr3 49336900 49337206 -178187372 - AluY SINE Alu -6 305 1 1958 223 10 68 chr3 49337206 49337323 -178187255 - L1MB3 LINE L1 -1642 4504 4382 1215 86 38 5 chr3 49337427 49337613 -178186965 + AluY SINE Alu 115 306 -5 892 181 65 0 chr3 49337625 49337780 -178186798 + FRAM SINE Alu 1 165 -1 2115 78 4 0 chr3 49338425 49338706 -178185872 + AluSx SINE Alu 6 287 -25 1465 155 63 20 chr3 49339367 49339945 -178184633 + MER51A LTR ERV1 1 636 -4 929 162 67 62 chr3 49340132 49340342 -178184236 + MER58A DNA MER1_type 14 224 0 2046 108 20 3 chr3 49340583 49340878 -178183700 + AluSx SINE Alu 1 300 -12 808 226 0 11 chr3 49340974 49341155 -178183423 + FRAM SINE Alu 1 175 -1 1578 171 0 32 chr3 49341163 49341473 -178183105 + AluJb SINE Alu 1 300 -12 231 149 64 0 chr3 49341475 49341522 -178183056 + L1MA9 LINE L1 6251 6300 -12 * 729 152 95 13 chr3 49341490 49341659 -178182919 + L1MB2 LINE L1 5603 5786 -385 544 114 98 24 chr3 49341664 49341787 -178182791 + L1MB2 LINE L1 6038 6169 -2 1831 113 7 47 chr3 49341839 49342139 -178182439 + AluSq SINE Alu 9 296 -17 682 261 0 6 chr3 49342200 49342357 -178182221 - MER58B DNA MER1_type -15 326 171 1915 111 21 14 chr3 49342357 49342493 -178182085 + AluSq SINE Alu 1 135 -178 2104 101 3 3 chr3 49342493 49342789 -178181789 + AluSx SINE Alu 1 296 -16 1915 111 21 14 chr3 49342789 49342941 -178181637 + AluSq SINE Alu 135 291 -22 24 0 0 0 chr3 49342941 49342965 -178181613 + AT_rich Low_complexity Low_complexity 1 24 0 828 183 49 0 chr3 49343068 49343232 -178181346 + AluJo SINE Alu 1 172 -140 546 134 0 12 chr3 49343475 49343557 -178181021 - AluJ/FLAM SINE Alu -221 91 11 216 230 79 95 chr3 49343707 49343776 -178180802 + MIR3 SINE MIR 85 153 -55 1725 137 13 17 chr3 49343776 49344075 -178180503 - AluSx SINE Alu -13 299 2 216 230 79 95 chr3 49344075 49344131 -178180447 + MIR3 SINE MIR 153 208 0 381 259 58 48 chr3 49344205 49344394 -178180184 - L1ME3A LINE L1 -15 6155 5965 554 251 31 12 chr3 49344670 49344833 -178179745 + MER5A DNA MER1_type 18 183 -6 21 0 0 0 chr3 49344962 49344983 -178179595 + GC_rich Low_complexity Low_complexity 1 21 0 1574 135 114 14 chr3 49346330 49346619 -178177959 + MER4D LTR ERV1 1 318 -585 218 167 0 0 chr3 49346619 49346655 -178177923 + (CA)n Simple_repeat Simple_repeat 2 37 0 201 175 0 0 chr3 49346658 49346698 -178177880 + (TA)n Simple_repeat Simple_repeat 1 40 0 2095 101 11 0 chr3 49346698 49346985 -178177593 - AluSx SINE Alu -22 290 1 1883 153 19 6 chr3 49346985 49347298 -178177280 + MER4D LTR ERV1 311 627 -276 2811 147 65 62 chr3 49347298 49347897 -178176681 + LTR18B LTR ERVL 1 601 -13 1380 156 15 53 chr3 49347932 49348080 -178176498 + MER4E LTR ERV1 526 661 -118 1337 182 108 69 chr3 49348080 49348513 -178176065 + LTR7 LTR ERV1 1 450 0 1380 156 15 53 chr3 49348513 49348627 -178175951 + MER4E LTR ERV1 661 778 -1 246 210 0 48 chr3 49348688 49348750 -178175828 + AluJ/monomer SINE Alu 244 302 0 333 118 0 0 chr3 49348889 49348940 -178175638 - AluSp/q SINE Alu -7 296 246 967 42 0 8 chr3 49348956 49349075 -178175503 - AluSp SINE Alu -195 118 1 788 220 51 0 chr3 49349147 49349324 -178175254 - MER5A DNA MER1_type -1 188 3 4226 116 21 16 chr3 49349601 49350046 -178174532 + MER41B LTR ERV1 1 442 -193 1773 144 0 30 chr3 49350046 49350344 -178174234 + AluSx SINE Alu 1 289 -23 195 42 0 0 chr3 49350344 49350368 -178174210 + (GGAA)n Simple_repeat Simple_repeat 3 26 0 4226 116 21 16 chr3 49350368 49350553 -178174025 + MER41B LTR ERV1 441 635 0 258 297 0 0 chr3 49350624 49350688 -178173890 + Charlie4 DNA MER1_type 1898 1961 0 2396 73 0 0 chr3 49350778 49351079 -178173499 + AluY SINE Alu 1 301 -10 1002 149 6 18 chr3 49351427 49351595 -178172983 + FRAM SINE Alu 1 166 0 2066 112 14 0 chr3 49351632 49351928 -178172650 + AluSx SINE Alu 1 300 -12 416 103 0 0 chr3 49352029 49352087 -178172491 - Alu SINE Alu -255 63 6 1662 186 0 16 chr3 49352381 49352698 -178171880 + AluJo SINE Alu 1 312 0 1020 298 94 4 chr3 49353050 49353291 -178171287 - L2 LINE L2 -1 3312 3094 1668 146 10 21 chr3 49353291 49353579 -178170999 + AluJo SINE Alu 12 296 -16 1020 298 94 4 chr3 49353579 49353811 -178170767 - L2 LINE L2 -219 3094 2781 969 172 0 0 chr3 49353811 49353968 -178170610 - AluJb SINE Alu -19 293 137 3365 215 201 20 chr3 49353969 49354894 -178169684 - L2 LINE L2 -524 2790 1661 1725 145 57 3 chr3 49354894 49355190 -178169388 + AluSx SINE Alu 1 312 0 3365 215 201 20 chr3 49355190 49355290 -178169288 - L2 LINE L2 -1653 1661 1580 1584 225 90 48 chr3 49355290 49355667 -178168911 - MLT1D LTR MaLR 0 505 102 1956 113 0 33 chr3 49355667 49355967 -178168611 + AluSx SINE Alu 4 293 -19 1584 225 90 48 chr3 49355967 49356069 -178168509 - MLT1D LTR MaLR -403 102 6 1178 273 3 25 chr3 49356073 49356235 -178168343 - L2 LINE L2 -1729 1585 1432 2184 92 7 10 chr3 49356235 49356540 -178168038 + AluSp SINE Alu 1 304 -9 1178 273 3 25 chr3 49356540 49356692 -178167886 - L2 LINE L2 -1882 1432 1278 1868 137 0 4 chr3 49356797 49357075 -178167503 - AluSx SINE Alu -35 277 1 762 138 0 16 chr3 49357092 49357215 -178167363 - AluJo SINE Alu -18 294 174 674 159 0 0 chr3 49357206 49357313 -178167265 - AluJo SINE Alu -204 108 2 * 2096 123 0 0 chr3 49357617 49357917 -178166661 + AluSx SINE Alu 1 300 -12 1484 184 0 11 chr3 49357925 49358207 -178166371 + AluJo SINE Alu 1 279 -33 1630 106 28 9 chr3 49358207 49358585 -178165993 + MSTA LTR MaLR 2 428 0 523 245 156 54 chr3 49358604 49358943 -178165635 + L2 LINE L2 2699 3063 -250 2173 96 0 3 chr3 49359316 49359609 -178164969 + AluSq SINE Alu 1 292 -21 1616 93 9 4 chr3 49359714 49359939 -178164639 - AluSq SINE Alu -87 226 1 241 271 172 7 chr3 49360227 49360378 -178164200 + LTR16C LTR ERVL 1 176 -315 786 192 133 30 chr3 49360414 49360617 -178163961 + LTR16C LTR ERVL 268 491 0 31 76 0 0 chr3 49361581 49361647 -178162931 + AT_rich Low_complexity Low_complexity 1 66 0 1612 143 52 18 chr3 49361706 49361992 -178162586 + AluJb SINE Alu 1 296 -16 2158 84 3 53 chr3 49361992 49362312 -178162266 + AluSp SINE Alu 1 304 -9 2133 96 0 7 chr3 49362316 49362928 -178161650 + AluSc SINE Alu 1 298 -11 3943 133 111 106 chr3 49362968 49363275 -178161303 + L1MC3 LINE L1 6804 7108 -677 309 210 25 25 chr3 49363275 49363356 -178161222 + MLT1F1 LTR MaLR 46 126 -441 1929 109 41 24 chr3 49363358 49363652 -178160926 + AluSx SINE Alu 5 303 -9 3943 133 111 106 chr3 49363652 49364238 -178160340 + L1MC3 LINE L1 7108 7784 -1 1944 141 0 0 chr3 49364284 49364596 -178159982 + AluSx SINE Alu 1 312 0 21 57 0 0 chr3 49364628 49364663 -178159915 + AT_rich Low_complexity Low_complexity 1 35 0 1851 134 0 0 chr3 49364822 49365097 -178159481 + AluJb SINE Alu 3 277 -35 327 78 0 0 chr3 49365100 49365151 -178159427 + (CTAA)n Simple_repeat Simple_repeat 2 52 0 2199 87 0 34 chr3 49365379 49365701 -178158877 + AluY SINE Alu 1 311 0 1581 160 3 11 chr3 49365712 49365999 -178158579 + AluJb SINE Alu 2 286 -26 26 50 0 0 chr3 49366294 49366334 -178158244 + GC_rich Low_complexity Low_complexity 1 40 0 1601 214 95 52 chr3 49367038 49367838 -178156740 + L1MC4 LINE L1 7105 8042 0 1267 203 67 47 chr3 49367862 49368150 -178156428 + L1MD2 LINE L1 5993 6291 -68 2123 118 0 0 chr3 49368150 49368446 -178156132 - AluSq SINE Alu -17 296 1 1267 203 67 47 chr3 49368446 49368517 -178156061 + L1MD2 LINE L1 6291 6359 0 357 225 135 9 chr3 49368721 49368832 -178155746 - MIR3 SINE MIR -17 191 67 423 236 80 80 chr3 49369502 49369714 -178154864 - LTR16C LTR ERVL -4 487 276 1444 201 0 30 chr3 49369782 49370086 -178154492 + AluJo SINE Alu 4 298 -14 286 217 14 29 chr3 49370154 49370223 -178154355 + L2 LINE L2 3228 3295 -18 1987 109 12 44 chr3 49370235 49370555 -178154023 + AluSx SINE Alu 3 312 0 2016 119 0 10 chr3 49370561 49370863 -178153715 + AluSx SINE Alu 1 299 -13 837 168 0 0 chr3 49370943 49371074 -178153504 - FLAM_C SINE Alu -2 131 1 1166 177 0 5 chr3 49371131 49371346 -178153232 + AluJo SINE Alu 86 299 -13 518 248 133 68 chr3 49371355 49371436 -178153142 - L2 LINE L2 -94 3219 3145 2237 108 0 3 chr3 49371436 49371741 -178152837 + AluSx SINE Alu 1 304 -8 518 248 133 68 chr3 49371741 49371982 -178152596 - L2 LINE L2 -168 3145 2876 280 345 23 0 chr3 49372001 49372088 -178152490 - L2 LINE L2 -568 2746 2658 2341 39 3 0 chr3 49372316 49372598 -178151980 + AluY SINE Alu 1 283 -28 197 83 28 0 chr3 49372598 49372634 -178151944 + (CAAAC)n Simple_repeat Simple_repeat 2 38 0 1155 154 47 37 chr3 49372639 49372853 -178151725 + AluJb SINE Alu 85 300 -12 2230 102 0 3 chr3 49373117 49373420 -178151158 - AluSx SINE Alu -10 302 1 1357 159 30 60 chr3 49373474 49373775 -178150803 - AluJo SINE Alu -16 296 5 469 324 44 11 chr3 49375071 49375253 -178149325 - MIR SINE MIR -52 210 23 980 217 50 0 chr3 49375260 49375458 -178149120 + MER58A DNA MER1_type 17 224 0 1839 167 0 0 chr3 49375572 49375871 -178148707 + AluSx SINE Alu 1 299 -13 671 302 42 14 chr3 49375955 49376216 -178148362 + MLT1H1 LTR MaLR 18 325 -270 872 109 15 7 chr3 49376354 49376491 -178148087 + AluJo SINE Alu 4 141 -171 1986 82 0 82 chr3 49376940 49377269 -178147309 + AluY SINE Alu 2 305 0 984 170 0 6 chr3 49377269 49377451 -178147127 + AluSg/x SINE Alu 130 310 0 1317 200 4 0 chr3 49377454 49377689 -178146889 - MER46A DNA MER2_type 0 236 1 986 152 0 6 chr3 49377851 49378016 -178146562 - AluSg/x SINE Alu -12 300 137 40 0 0 0 chr3 49378028 49378068 -178146510 + AT_rich Low_complexity Low_complexity 1 40 0 2788 117 9 37 chr3 49378068 49378531 -178146047 + L1PA15 LINE L1 5716 6165 0 273 311 148 0 chr3 49378915 49379037 -178145541 - MIR SINE MIR -35 227 88 211 268 0 0 chr3 49380181 49380237 -178144341 + (CA)n Simple_repeat Simple_repeat 1 56 0 2030 127 7 0 chr3 49381489 49381781 -178142797 - AluSq SINE Alu -15 298 5 256 300 100 15 chr3 49382166 49382296 -178142282 - MIR SINE MIR -81 181 41 1764 180 0 3 chr3 49382483 49382789 -178141789 + AluJo SINE Alu 2 306 -6 282 208 117 0 chr3 49382814 49382891 -178141687 + L1ME4a LINE L1 5384 5469 -652 283 141 0 24 chr3 49382909 49382994 -178141584 + (TTA)n Simple_repeat Simple_repeat 2 84 0 1969 124 3 0 chr3 49383060 49383351 -178141227 + AluSx SINE Alu 1 292 -20 261 266 67 73 chr3 49383351 49383678 -178140900 + L1ME4a LINE L1 5626 5950 -171 1383 170 80 21 chr3 49383867 49384155 -178140423 - AluJb SINE Alu -7 305 1 418 183 203 92 chr3 49384289 49384442 -178140136 + MIR SINE MIR 81 250 -12 230 170 0 43 chr3 49384597 49384644 -178139934 + L2 LINE L2 3219 3263 -50 1494 158 14 43 chr3 49384755 49385033 -178139545 + AluJo SINE Alu 9 278 -34 1862 108 45 3 chr3 49385033 49385321 -178139257 - AluSx SINE Alu -12 300 1 1884 163 0 0 chr3 49386872 49387167 -178137411 - AluSx SINE Alu -17 295 1 1705 181 0 0 chr3 49387281 49387580 -178136998 + AluJb SINE Alu 1 299 -13 289 150 115 115 chr3 49387726 49387807 -178136771 + MER2 DNA MER2_type 98 181 -164 1555 149 12 44 chr3 49387807 49388128 -178136450 - AluJb SINE Alu -1 311 1 289 150 115 115 chr3 49388128 49388159 -178136419 + MER2 DNA MER2_type 180 210 -135 223 256 56 11 chr3 49388323 49388413 -178136165 + L2 LINE L2 2196 2289 -1025 384 317 197 8 chr3 49388524 49388925 -178135653 + L2 LINE L2 2498 2974 -340 744 183 0 8 chr3 49388952 49389083 -178135495 - FLAM_A SINE Alu -3 130 1 295 246 15 0 chr3 49389241 49389306 -178135272 - MIR SINE MIR 0 262 197 211 262 0 0 chr3 49389719 49389761 -178134817 + C-rich Low_complexity Low_complexity 3 44 0 820 268 7 15 chr3 49389826 49390095 -178134483 - AluJb SINE Alu -43 269 3 180 0 0 0 chr3 49391149 49391169 -178133409 + (TA)n Simple_repeat Simple_repeat 2 21 0 2200 230 87 38 chr3 49391595 49392277 -178132301 - L1MC4 LINE L1 -143 7899 7175 2158 76 28 0 chr3 49392277 49392565 -178132013 - AluSp SINE Alu -15 298 3 2200 230 87 38 chr3 49392565 49392640 -178131938 - L1MC4 LINE L1 -867 7175 7105 467 214 0 0 chr3 49392901 49392985 -178131593 - MER5A DNA MER1_type 0 189 106 371 213 121 11 chr3 49393001 49393132 -178131446 - MLT1I LTR MaLR -49 391 244 686 285 221 10 chr3 49393285 49393675 -178130903 + L2 LINE L2 2841 3312 -1 319 287 8 90 chr3 49393680 49393802 -178130776 - MIR SINE MIR -102 160 49 409 288 38 102 chr3 49393973 49394083 -178130495 + L1MC4a LINE L1 5634 5749 -2059 1789 162 0 19 chr3 49394083 49394392 -178130186 + AluJb SINE Alu 3 305 -7 409 288 38 102 chr3 49394392 49394594 -178129984 + L1MC4a LINE L1 5749 5926 -1882 207 235 129 24 chr3 49397755 49397840 -178126738 - MIR SINE MIR -99 163 70 835 116 116 0 chr3 49398493 49398622 -178125956 - U4 snRNA snRNA -1 144 1 198 0 0 0 chr3 49399369 49399391 -178125187 + (A)n Simple_repeat Simple_repeat 1 22 0 735 125 0 0 chr3 49400564 49400676 -178123902 + AluSg/x SINE Alu 198 309 -3 30 0 0 0 chr3 49401923 49401953 -178122625 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr3 49403345 49403365 -178121213 + (A)n Simple_repeat Simple_repeat 1 20 0 216 0 0 0 chr3 49404937 49404961 -178119617 + (CA)n Simple_repeat Simple_repeat 2 25 0 1936 129 10 3 chr3 49407106 49407408 -178117170 + AluSx SINE Alu 1 304 -8 198 0 0 0 chr3 49410037 49410059 -178114519 + (T)n Simple_repeat Simple_repeat 1 22 0 288 0 0 0 chr3 49410345 49410377 -178114201 + (TCC)n Simple_repeat Simple_repeat 1 32 0 200 163 47 0 chr3 49410701 49410744 -178113834 + GA-rich Low_complexity Low_complexity 6 50 0 1412 205 0 30 chr3 49411787 49412090 -178112488 - AluJo SINE Alu -15 297 4 682 150 25 0 chr3 49412210 49412330 -178112248 + L1MD3 LINE L1 7872 7994 -1 2146 102 0 10 chr3 49412496 49412801 -178111777 + AluSq SINE Alu 1 302 -11 412 276 136 31 chr3 49413007 49413293 -178111285 + L2 LINE L2 2927 3242 -71 240 269 29 67 chr3 49413511 49413615 -178110963 - MIR SINE MIR -48 214 115 1180 181 5 9 chr3 49414115 49414331 -178110247 + AluJb SINE Alu 85 299 -13 237 284 0 15 chr3 49414355 49414422 -178110156 + (TA)n Simple_repeat Simple_repeat 1 66 0 537 226 0 22 chr3 49414507 49414644 -178109934 + MER104 DNA Tc2 18 151 -29 224 328 15 0 chr3 49414716 49414783 -178109795 + L3 LINE CR1 1486 1553 -24 2055 106 0 20 chr3 49414783 49415086 -178109492 + AluSq SINE Alu 1 297 -16 22 0 0 0 chr3 49415086 49415108 -178109470 + AT_rich Low_complexity Low_complexity 1 22 0 192 250 107 0 chr3 49415202 49415258 -178109320 - MIR SINE MIR -75 187 126 311 273 91 75 chr3 49415867 49416054 -178108524 - MLT1L LTR MaLR -424 191 2 198 287 198 0 chr3 49416085 49416186 -178108392 - L2 LINE L2 -1 3271 3151 27 29 0 0 chr3 49416860 49416894 -178107684 + AT_rich Low_complexity Low_complexity 1 34 0 4521 154 6 27 chr3 49416953 49417664 -178106914 + L1MB8 LINE L1 5365 6058 -120 1654 159 7 14 chr3 49417664 49417954 -178106624 + AluJo SINE Alu 1 288 -24 4521 154 6 27 chr3 49417954 49418068 -178106510 + L1MB8 LINE L1 6058 6173 -5 301 195 87 3 chr3 49418129 49418207 -178106371 + L1MD2 LINE L1 6019 6122 -64 2132 129 3 0 chr3 49418207 49418518 -178106060 + AluSx SINE Alu 1 312 0 250 264 70 47 chr3 49418950 49419079 -178105499 + L2 LINE L2 2720 2851 -463 236 226 57 0 chr3 49419204 49419257 -178105321 + MIR SINE MIR 204 259 -3 187 243 257 0 chr3 49419320 49419394 -178105184 + L2 LINE L2 3161 3253 -19 314 254 112 52 chr3 49421033 49421167 -178103411 + MER5A DNA MER1_type 24 165 -24 * 782 166 99 0 chr3 49421048 49421199 -178103379 - MER5A DNA MER1_type -23 166 1 763 187 0 0 chr3 49422259 49422393 -178102185 + AluJo SINE Alu 2 135 -177 1986 253 130 76 chr3 49422497 49422551 -178102027 + HAL1 LINE L1 52 102 -2405 1597 109 0 0 chr3 49422551 49422772 -178101806 + AluSg/x SINE Alu 83 303 -9 1986 253 130 76 chr3 49422772 49423959 -178100619 + HAL1 LINE L1 102 1389 -1118 192 77 0 0 chr3 49423959 49423985 -178100593 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1986 253 130 76 chr3 49423985 49424247 -178100331 + HAL1 LINE L1 1389 1636 -871 1265 192 126 4 chr3 49424255 49424516 -178100062 + AluJb SINE Alu 2 294 -8 1804 150 7 10 chr3 49424562 49424868 -178099710 + AluJb SINE Alu 1 305 -7 245 147 0 0 chr3 49425096 49425130 -178099448 + Alu SINE Alu 9 42 -258 268 231 51 43 chr3 49425167 49425284 -178099294 + L1MC5 LINE L1 7414 7531 -430 253 268 147 52 chr3 49425272 49425503 -178099075 + L1ME3A LINE L1 5918 6170 0 * 281 308 11 0 chr3 49425605 49425696 -178098882 + HAL1b LINE L1 1201 1292 -56 1636 152 46 30 chr3 49425924 49426226 -178098352 + AluJo SINE Alu 1 307 -5 21 0 0 0 chr3 49426489 49426510 -178098068 + AT_rich Low_complexity Low_complexity 1 21 0 2162 97 0 13 chr3 49427876 49428174 -178096404 - AluSx SINE Alu -18 294 1 249 261 80 0 chr3 49428766 49428854 -178095724 - MIR SINE MIR -147 115 21 1850 166 0 3 chr3 49428965 49429273 -178095305 + AluJb SINE Alu 1 307 -5 37 39 0 0 chr3 49429478 49429529 -178095049 + AT_rich Low_complexity Low_complexity 1 51 0 340 323 0 37 chr3 49429971 49430193 -178094385 + GA-rich Low_complexity Low_complexity 1 213 0 1933 138 3 0 chr3 49430756 49431039 -178093539 + AluSx SINE Alu 1 284 -28 194 0 39 0 chr3 49431042 49431068 -178093510 + (TAA)n Simple_repeat Simple_repeat 2 28 0 629 146 57 0 chr3 49431072 49431195 -178093383 + L1MB8 LINE L1 3841 3970 -2176 1036 88 0 0 chr3 49431200 49431336 -178093242 + AluSq/x SINE Alu 1 136 -177 2005 98 11 0 chr3 49431340 49431639 -178092939 + AluSx SINE Alu 6 307 0 4308 190 52 57 chr3 49431639 49432449 -178092129 + L1MB8 LINE L1 3961 4774 -1404 2171 94 3 7 chr3 49432449 49432746 -178091832 + AluSx SINE Alu 1 296 -16 4308 190 52 57 chr3 49432746 49433062 -178091516 + L1MB8 LINE L1 4774 5090 -1088 342 125 0 0 chr3 49433062 49433110 -178091468 + MER66B LTR ERV1 298 345 -141 4308 190 52 57 chr3 49433110 49433768 -178090810 + L1MB8 LINE L1 5090 5728 -450 2162 131 0 0 chr3 49433768 49434059 -178090519 + AluSx SINE Alu 6 296 -16 4308 190 52 57 chr3 49434059 49434492 -178090086 + L1MB8 LINE L1 5728 6162 -16 1246 145 50 117 chr3 49434511 49434624 -178089954 + AluJo SINE Alu 27 146 -166 2406 80 0 7 chr3 49434624 49434923 -178089655 - AluSx SINE Alu -15 297 1 1246 145 50 117 chr3 49434923 49435091 -178089487 + AluJo SINE Alu 146 289 -23 217 295 23 62 chr3 49435980 49436109 -178088469 - L2 LINE L2 -40 3273 3150 703 191 8 15 chr3 49436305 49436436 -178088142 + AluJo SINE Alu 7 136 -176 1237 137 6 0 chr3 49436503 49436678 -178087900 + AluJo SINE Alu 127 302 -10 502 206 0 84 chr3 49437061 49437192 -178087386 - L2 LINE L2 -1 3312 3193 205 343 0 14 chr3 49437676 49437746 -178086832 - L2 LINE L2 -556 2758 2690 376 339 11 6 chr3 49438142 49438316 -178086262 - L2 LINE L2 -1231 2083 1909 1933 144 7 3 chr3 49438836 49439120 -178085458 + AluJb SINE Alu 1 285 -27 246 281 160 34 chr3 49439333 49439596 -178084982 - L2 LINE L2 -2424 890 595 259 262 196 0 chr3 49439709 49439816 -178084762 - MIR SINE MIR -51 211 84 189 0 0 0 chr3 49439820 49439841 -178084737 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1172 186 5 0 chr3 49439841 49440034 -178084544 - AluJo SINE Alu -32 280 87 862 195 6 6 chr3 49440491 49440650 -178083928 - FRAM SINE Alu -7 159 1 1093 150 9 94 chr3 49441977 49442210 -178082368 + MER20 DNA MER1_type 6 218 -1 390 283 46 13 chr3 49442438 49442590 -178081988 - MIR SINE MIR -54 208 52 687 247 106 22 chr3 49443389 49443616 -178080962 - MIR SINE MIR 0 262 17 204 279 186 69 chr3 49444880 49445084 -178079494 - MIR SINE MIR -6 256 29 1775 158 18 7 chr3 49445180 49445464 -178079114 + AluJo SINE Alu 1 287 -25 630 222 78 0 chr3 49446425 49446592 -178077986 - MIR SINE MIR -2 260 81 1030 148 102 0 chr3 49447459 49447635 -178076943 + MER30 DNA MER1_type 37 230 0 2287 104 0 7 chr3 49447675 49447974 -178076604 - AluSg SINE Alu -13 297 1 339 321 30 8 chr3 49448412 49448546 -178076032 + MIR3 SINE MIR 67 203 -5 2211 109 30 0 chr3 49448926 49449229 -178075349 + AluSx SINE Alu 1 312 0 286 200 13 40 chr3 49449341 49449416 -178075162 - MIR SINE MIR -87 175 103 706 225 103 82 chr3 49449584 49450167 -178074411 + L1MC5 LINE L1 7102 7696 -265 22 0 0 0 chr3 49450529 49450551 -178074027 + AT_rich Low_complexity Low_complexity 1 22 0 1131 288 92 9 chr3 49450977 49451651 -178072927 + L2 LINE L2 2530 3274 -39 1121 148 151 109 chr3 49451659 49451817 -178072761 + MER2 DNA MER2_type 1 151 -194 2058 103 10 58 chr3 49451817 49452128 -178072450 - AluSx SINE Alu -16 296 1 1121 148 151 109 chr3 49452128 49452300 -178072278 + MER2 DNA MER2_type 151 345 0 2320 107 10 0 chr3 49452749 49453058 -178071520 + AluSx SINE Alu 1 312 0 227 266 74 42 chr3 49453450 49453545 -178071033 + MIR SINE MIR 52 151 -57 2168 97 17 0 chr3 49453756 49454056 -178070522 + AluSg SINE Alu 1 305 -5 180 0 0 0 chr3 49454250 49454270 -178070308 + (CCCG)n Simple_repeat Simple_repeat 4 23 0 706 27 18 2 chr3 49454650 49454871 -178069707 - AluY SINE Alu -17 294 30 419 239 201 0 chr3 49455153 49455287 -178069291 - MIR SINE MIR -88 174 14 1615 112 30 88 chr3 49455420 49455725 -178068853 - MER1B DNA MER1_type 0 339 53 2362 88 0 19 chr3 49455959 49456266 -178068312 - AluSg SINE Alu -9 301 1 254 164 110 67 chr3 49456538 49456611 -178067967 - AluJ/FLAM SINE Alu -237 65 1 2188 121 0 10 chr3 49456821 49457127 -178067451 - AluSg SINE Alu -7 303 1 2050 118 11 7 chr3 49457130 49457459 -178067119 - AluSq SINE Alu 0 330 1 2494 47 0 27 chr3 49457499 49457800 -178066778 - AluY SINE Alu -16 295 3 448 327 161 37 chr3 49458007 49458731 -178065847 - L2 LINE L2 -556 2758 1891 2100 128 13 3 chr3 49458731 49459035 -178065543 + AluSx SINE Alu 5 311 -1 448 327 161 37 chr3 49459035 49459240 -178065338 - L2 LINE L2 -1423 1891 1713 339 351 79 49 chr3 49459285 49459894 -178064684 - L2 LINE L2 -1939 1375 749 1885 123 33 11 chr3 49460090 49460393 -178064185 - AluSq SINE Alu 0 312 4 401 198 49 0 chr3 49460518 49460599 -178063979 - MLT1F LTR MaLR -457 85 1 577 301 66 70 chr3 49460665 49460696 -178063882 + L2 LINE L2 2220 2250 -1064 2080 128 0 3 chr3 49460696 49460986 -178063592 + AluSx SINE Alu 1 289 -23 577 301 66 70 chr3 49460986 49461052 -178063526 + L2 LINE L2 2250 2315 -999 2451 124 39 181 chr3 49461052 49461698 -178062880 - MLT2B3 LTR ERVL 0 554 1 577 301 66 70 chr3 49461698 49462128 -178062450 + L2 LINE L2 2315 2746 -568 945 152 129 0 chr3 49462220 49462391 -178062187 - L1MB3 LINE L1 0 6183 5991 251 180 80 0 chr3 49462672 49462722 -178061856 + L2 LINE L2 3219 3272 0 282 167 0 0 chr3 49464970 49465030 -178059548 + CT-rich Low_complexity Low_complexity 1 60 0 223 152 0 106 chr3 49465432 49465498 -178059080 - L2 LINE L2 0 3272 3214 1978 167 3 0 chr3 49465620 49465931 -178058647 - AluJo SINE Alu 0 312 1 2170 114 4 0 chr3 49465944 49466255 -178058323 - AluSp SINE Alu 0 312 1 22 0 0 0 chr3 49466445 49466467 -178058111 + AT_rich Low_complexity Low_complexity 1 22 0 580 236 28 0 chr3 49466534 49466678 -178057900 - L1MD2 LINE L1 -17 6736 6589 288 0 0 0 chr3 49466679 49466711 -178057867 + (TG)n Simple_repeat Simple_repeat 2 33 0 6316 193 99 98 chr3 49466720 49467259 -178057319 - L1MD2 LINE L1 -238 6515 5978 2239 121 3 3 chr3 49467259 49467564 -178057014 - AluSq SINE Alu -8 305 1 6316 193 99 98 chr3 49467564 49469330 -178055248 - L1MD2 LINE L1 -775 5978 4215 435 188 25 0 chr3 49469330 49469410 -178055168 - AluJ/FLAM SINE Alu -229 83 2 6316 193 99 98 chr3 49469410 49470104 -178054474 - L1MD2 LINE L1 -2538 4215 3523 1644 158 0 92 chr3 49470104 49470421 -178054157 + AluJo SINE Alu 1 288 -24 6316 193 99 98 chr3 49470421 49470870 -178053708 - L1MD2 LINE L1 -3230 3523 3076 622 142 186 9 chr3 49470870 49470983 -178053595 - FLAM_A SINE Alu 0 133 1 6316 193 99 98 chr3 49470983 49471567 -178053011 - L1MD2 LINE L1 -3677 3076 2494 762 196 0 8 chr3 49471567 49471700 -178052878 - FLAM_C SINE Alu -1 132 1 2171 122 10 0 chr3 49471704 49472008 -178052570 - AluSx SINE Alu -5 307 1 6316 193 99 98 chr3 49472008 49472100 -178052478 - L1MD2 LINE L1 -4261 2492 2402 1449 186 51 0 chr3 49472100 49472353 -178052225 + AluJo SINE Alu 1 266 -46 6316 193 99 98 chr3 49472353 49473202 -178051376 - L1MD2 LINE L1 -4351 2402 1555 1702 101 0 0 chr3 49473202 49473419 -178051159 - AluSg/x SINE Alu -13 299 83 6316 193 99 98 chr3 49473419 49473528 -178051050 - L1MD2 LINE L1 -5198 1555 4 24 32 0 0 chr3 49474438 49474469 -178050109 + AT_rich Low_complexity Low_complexity 1 31 0 332 327 109 0 chr3 49475291 49475456 -178049122 + MER91A DNA MER1_type 1 183 -13 2237 131 0 0 chr3 49476582 49476887 -178047691 - AluSx SINE Alu -7 305 1 2168 110 7 10 chr3 49477084 49477462 -178047116 - AluSq SINE Alu 0 377 1 549 266 197 0 chr3 49477642 49477845 -178046733 - MIR SINE MIR -1 261 19 30 0 0 0 chr3 49478006 49478036 -178046542 + AT_rich Low_complexity Low_complexity 1 30 0 1449 163 54 0 chr3 49478049 49478289 -178046289 + AluJb SINE Alu 1 253 -59 218 122 0 24 chr3 49478311 49478352 -178046226 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 1050 151 47 12 chr3 49478352 49478524 -178046054 - AluJo SINE Alu -129 183 6 2546 53 0 10 chr3 49478555 49478856 -178045722 - AluY SINE Alu -13 298 1 1255 226 175 5 chr3 49479400 49479799 -178044779 - MLT1C LTR MaLR 0 467 1 468 284 60 11 chr3 49479938 49480121 -178044457 + L1MEd LINE L1 23 214 -5905 816 309 50 54 chr3 49480152 49480193 -178044385 + L1MEd LINE L1 287 327 -5792 1927 133 4 4 chr3 49480193 49480472 -178044106 + AluJo SINE Alu 1 279 -33 198 0 0 0 chr3 49480474 49480496 -178044082 + (CAAAA)n Simple_repeat Simple_repeat 1 22 0 816 309 50 54 chr3 49480496 49480930 -178043648 + L1MEd LINE L1 328 763 -5356 554 242 116 53 chr3 49480978 49481280 -178043298 + L1M4 LINE L1 3597 3917 -2229 868 202 121 0 chr3 49482002 49482200 -178042378 + MER58A DNA MER1_type 3 224 0 267 225 50 31 chr3 49482231 49482391 -178042187 + MER5C DNA MER1_type 62 314 -10 1771 145 6 61 chr3 49483562 49483873 -178040705 + AluJb SINE Alu 1 294 -18 2014 144 0 10 chr3 49484311 49484610 -178039968 + AluJb SINE Alu 1 296 -16 306 294 156 67 chr3 49484679 49484709 -178039869 - L1MCa LINE L1 -4156 2270 2244 837 120 0 70 chr3 49484719 49484861 -178039717 - AluJo/FLAM SINE Alu -169 133 2 306 294 156 67 chr3 49484862 49484915 -178039663 - L1MCa LINE L1 -4182 2244 2197 186 71 0 0 chr3 49484915 49484943 -178039635 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 306 294 156 67 chr3 49484943 49485116 -178039462 - L1MCa LINE L1 -4229 2197 1978 * 326 68 80 0 chr3 49485044 49485132 -178039446 + (TA)n Simple_repeat Simple_repeat 2 96 0 225 0 0 0 chr3 49485132 49485157 -178039421 + (GA)n Simple_repeat Simple_repeat 2 26 0 1906 149 0 22 chr3 49486431 49486746 -178037832 - AluJb SINE Alu -1 311 4 1795 121 7 34 chr3 49486749 49487046 -178037532 - AluJb SINE Alu -11 301 13 1303 142 18 23 chr3 49487057 49487276 -178037302 - MER20 DNA MER1_type -1 218 1 26 64 0 0 chr3 49487767 49487814 -178036764 + AT_rich Low_complexity Low_complexity 1 47 0 2130 123 3 3 chr3 49488232 49488542 -178036036 + AluSq SINE Alu 1 310 -3 351 322 34 20 chr3 49489467 49489613 -178034965 - MIR3 SINE MIR -28 180 33 736 179 0 0 chr3 49489769 49489886 -178034692 + AluJo/FLAM SINE Alu 4 120 -182 2367 79 0 7 chr3 49489887 49490192 -178034386 - AluY SINE Alu -8 303 1 26 30 0 0 chr3 49490197 49490230 -178034348 + AT_rich Low_complexity Low_complexity 1 33 0 207 0 0 0 chr3 49490257 49490280 -178034298 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1627 175 34 17 chr3 49490616 49490907 -178033671 + AluSx SINE Alu 1 296 -16 1667 176 14 0 chr3 49493618 49493902 -178030676 + AluJo SINE Alu 1 288 -24 2087 80 0 0 chr3 49494121 49494385 -178030193 + AluSc SINE Alu 33 296 -13 308 265 97 25 chr3 49496148 49496336 -178028242 + MIR SINE MIR 2 197 -65 371 270 168 17 chr3 49498551 49498818 -178025760 + L1ME LINE L1 5272 5524 -642 364 113 0 0 chr3 49498826 49498879 -178025699 + MLT1B LTR MaLR 1 53 -337 * 425 169 36 0 chr3 49498870 49498953 -178025625 + MLT1B LTR MaLR 305 390 0 256 329 155 12 chr3 49498965 49499217 -178025361 + L1ME LINE L1 5596 5883 -281 259 241 234 7 chr3 49500012 49500153 -178024425 + L3 LINE CR1 1301 1473 -104 407 265 169 6 chr3 49500767 49500933 -178023645 + L2 LINE L2 3075 3267 -5 1098 164 10 43 chr3 49502059 49502266 -178022312 - AluJb SINE Alu -29 283 84 820 271 99 18 chr3 49503069 49503353 -178021225 + MLT1L LTR MaLR 201 507 -108 869 156 43 21 chr3 49503481 49503667 -178020911 + MER96B DNA MER1_type? 3 192 -225 316 328 9 0 chr3 49503738 49503854 -178020724 + MIR SINE MIR 21 137 -71 201 326 34 61 chr3 49505899 49506046 -178018532 - MIR3 SINE MIR -32 176 34 285 29 0 0 chr3 49506123 49506157 -178018421 + (GA)n Simple_repeat Simple_repeat 2 35 0 2204 109 0 3 chr3 49506263 49506565 -178018013 + AluSx SINE Alu 1 301 -11 449 309 10 62 chr3 49509576 49509770 -178014808 - MER5A DNA MER1_type -2 187 4 245 282 155 0 chr3 49512356 49512459 -178012119 + MIR SINE MIR 114 232 -30 243 370 28 0 chr3 49512543 49512651 -178011927 - L2 LINE L2 -3 3269 3159 296 333 48 27 chr3 49513231 49513378 -178011200 + MIR3 SINE MIR 1 150 -58 229 257 0 79 chr3 49513795 49513896 -178010682 + GA-rich Low_complexity Low_complexity 6 98 0 297 278 89 11 chr3 49513966 49514056 -178010522 + MER91A DNA MER1_type 100 196 0 228 303 0 0 chr3 49514690 49514799 -178009779 + (TCCA)n Simple_repeat Simple_repeat 1 109 0 274 271 13 0 chr3 49514839 49514990 -178009588 + (TCCA)n Simple_repeat Simple_repeat 1 153 0 210 349 8 31 chr3 49514992 49515121 -178009457 + (CCTA)n Simple_repeat Simple_repeat 1 126 0 204 338 0 14 chr3 49515247 49515321 -178009257 + G-rich Low_complexity Low_complexity 5 77 0 2072 110 0 41 chr3 49515769 49516088 -178008490 - AluSg SINE Alu -4 306 1 279 210 320 0 chr3 49516742 49516842 -178007736 - MIR3 SINE MIR -18 190 59 193 95 24 24 chr3 49517026 49517068 -178007510 + (GGGAGA)n Simple_repeat Simple_repeat 1 42 0 254 293 0 0 chr3 49520198 49520273 -178004305 + (CACCAT)n Simple_repeat Simple_repeat 4 78 0 421 313 104 5 chr3 49520274 49520466 -178004112 - MIR SINE MIR -11 251 41 256 339 47 24 chr3 49520605 49520732 -178003846 - MIR SINE MIR -26 236 107 2051 125 3 0 chr3 49521145 49521440 -178003138 + AluSg SINE Alu 1 296 -14 288 0 0 0 chr3 49521619 49521651 -178002927 + (TG)n Simple_repeat Simple_repeat 2 33 0 414 254 32 16 chr3 49521699 49521825 -178002753 - MIR SINE MIR -103 159 32 2173 91 14 0 chr3 49522849 49523145 -178001433 + AluY SINE Alu 1 300 -11 198 0 0 0 chr3 49523145 49523167 -178001411 + (TA)n Simple_repeat Simple_repeat 2 23 0 1967 132 0 0 chr3 49523221 49523510 -178001068 + AluSg SINE Alu 20 308 -2 481 280 159 0 chr3 49523879 49524036 -178000542 + MER91A DNA MER1_type 1 182 -14 234 246 87 14 chr3 49524449 49524518 -178000060 - MIR3 SINE MIR -31 177 104 424 300 178 37 chr3 49524582 49525397 -177999181 + L2 LINE L2 2358 3290 -23 2328 232 92 33 chr3 49526235 49526503 -177998075 + MER20B DNA MER1_type 4 255 -528 2140 112 23 0 chr3 49526503 49526807 -177997771 - AluSx SINE Alu -1 311 1 2328 232 92 33 chr3 49526807 49527233 -177997345 + MER20B DNA MER1_type 255 739 -44 2109 87 0 7 chr3 49527295 49527572 -177997006 - AluSx SINE Alu -37 275 1 180 77 0 0 chr3 49527929 49527955 -177996623 + (CAGCC)n Simple_repeat Simple_repeat 3 28 0 502 245 227 0 chr3 49528334 49528497 -177996081 - MIR SINE MIR 0 262 63 282 319 24 0 chr3 49529174 49529340 -177995238 + (CA)n Simple_repeat Simple_repeat 1 170 0 366 23 0 0 chr3 49530681 49530724 -177993854 + (TG)n Simple_repeat Simple_repeat 1 43 0 923 309 107 38 chr3 49533691 49534222 -177990356 + MLT1K LTR MaLR 10 577 -11 183 231 209 33 chr3 49534584 49534675 -177989903 - MIR SINE MIR -77 131 25 392 338 60 13 chr3 49534989 49535316 -177989262 - L2 LINE L2 -251 3021 2682 206 250 33 0 chr3 49536488 49536548 -177988030 + GA-rich Low_complexity Low_complexity 1 62 0 521 231 8 8 chr3 49536662 49536779 -177987799 + L1ME3 LINE L1 6018 6134 -28 389 227 267 40 chr3 49536861 49537011 -177987567 + MIR SINE MIR 7 190 -72 231 36 0 0 chr3 49537288 49537316 -177987262 + (T)n Simple_repeat Simple_repeat 1 28 0 503 231 79 50 chr3 49538084 49538361 -177986217 + L1MC5 LINE L1 7629 7913 -48 2037 136 0 3 chr3 49538444 49538754 -177985824 + AluSx SINE Alu 1 309 -3 231 270 103 48 chr3 49539439 49539565 -177985013 - MIR3 SINE MIR -54 154 22 243 88 0 0 chr3 49540336 49540370 -177984208 + (T)n Simple_repeat Simple_repeat 1 34 0 231 227 53 53 chr3 49541540 49541615 -177982963 + MIR3 SINE MIR 111 185 -23 27 0 0 0 chr3 49542549 49542576 -177982002 + GC_rich Low_complexity Low_complexity 1 27 0 237 256 13 39 chr3 49543478 49543556 -177981022 - MIR3 SINE MIR -24 184 109 289 336 19 0 chr3 49544087 49544191 -177980387 + CT-rich Low_complexity Low_complexity 1 106 0 302 282 0 0 chr3 49544226 49544304 -177980274 - L2 LINE L2 -2 3270 3193 194 356 10 19 chr3 49546247 49546351 -177978227 - L3 LINE CR1 -123 1454 1352 463 275 21 37 chr3 49546751 49546942 -177977636 - LTR16B LTR ERVL 0 464 206 2186 122 64 9 chr3 49547349 49547694 -177976884 - THE1B LTR MaLR 0 364 1 261 209 0 0 chr3 49547792 49547859 -177976719 + (TG)n Simple_repeat Simple_repeat 1 67 0 370 297 125 10 chr3 49548558 49548750 -177975828 + L1M4 LINE L1 2355 2568 -3578 1702 57 33 0 chr3 49549035 49549247 -177975331 - AluSg/x SINE Alu -21 289 71 1324 222 128 89 chr3 49549247 49549787 -177974791 - MLT1E LTR MaLR -32 561 1 320 271 83 53 chr3 49549836 49549853 -177974725 + L1MC4 LINE L1 7897 7912 -130 2183 95 0 0 chr3 49549853 49550148 -177974430 + AluY SINE Alu 1 295 -16 320 271 83 53 chr3 49550148 49550263 -177974315 + L1MC4 LINE L1 7912 8033 -9 367 297 133 12 chr3 49550340 49550835 -177973743 + L1M4 LINE L1 2914 3468 -2678 21 71 0 0 chr3 49551020 49551062 -177973516 + AT_rich Low_complexity Low_complexity 1 42 0 357 224 54 20 chr3 49553023 49553170 -177971408 + GA-rich Low_complexity Low_complexity 2 153 0 1859 147 0 0 chr3 49553399 49553678 -177970900 + AluSx SINE Alu 1 279 -33 247 65 43 0 chr3 49553680 49553726 -177970852 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 612 190 164 60 chr3 49553728 49553997 -177970581 - L1MC5 LINE L1 -55 7906 7610 274 278 141 34 chr3 49554304 49554616 -177969962 + L2 LINE L2 2793 3156 -157 1497 232 149 25 chr3 49555755 49556204 -177968374 + MLT1K LTR MaLR 76 580 -8 2272 166 65 20 chr3 49556896 49557343 -177967235 - MLT1C LTR MaLR 0 467 1 1837 254 62 14 chr3 49557343 49557827 -177966751 - MLT1F LTR MaLR -7 535 29 756 203 71 47 chr3 49557847 49558059 -177966519 - MLT1J LTR MaLR -243 268 52 445 264 0 9 chr3 49558059 49558165 -177966413 - LTR16C LTR ERVL 0 491 387 303 139 167 14 chr3 49559122 49559194 -177965384 - Charlie4a DNA MER1_type 0 508 426 574 126 19 0 chr3 49559199 49559302 -177965276 - L1PB2 LINE L1 0 6151 6047 15262 190 21 13 chr3 49559302 49562045 -177962533 - L1P5 LINE L1 -467 6400 3680 2103 130 0 0 chr3 49562045 49562344 -177962234 - AluSx SINE Alu -13 299 1 15262 190 21 13 chr3 49562344 49565677 -177958901 - L1P5 LINE L1 -3187 3680 18 1772 212 38 7 chr3 49565677 49566096 -177958482 - Charlie4a DNA MER1_type -53 455 24 990 257 51 20 chr3 49567279 49567619 -177956959 - LTR16C LTR ERVL -8 483 72 975 186 59 20 chr3 49569245 49569449 -177955129 + MIR SINE MIR 51 262 0 1612 183 31 109 chr3 49569543 49569964 -177954614 - MLT1E LTR MaLR 0 593 206 267 314 51 8 chr3 49570665 49570783 -177953795 - MIR SINE MIR -63 145 23 187 269 261 22 chr3 49571072 49571206 -177953372 - MIR3 SINE MIR -25 183 18 205 206 38 133 chr3 49572218 49572332 -177952246 + MIR SINE MIR 33 151 -57 1337 181 69 22 chr3 49572812 49573089 -177951489 + AluJo SINE Alu 1 290 -22 1094 162 63 22 chr3 49573198 49573420 -177951158 + AluJb SINE Alu 1 231 -81 528 165 0 10 chr3 49573425 49573522 -177951056 - L1MC4 LINE L1 -644 7398 7303 251 200 0 0 chr3 49573538 49573588 -177950990 - Alu SINE Alu -1 301 252 2125 83 0 4 chr3 49573636 49573914 -177950664 + AluSc SINE Alu 18 294 -15 470 283 61 0 chr3 49573919 49574117 -177950461 - L1MEc LINE L1 -1822 5135 4926 420 223 0 43 chr3 49574133 49574227 -177950351 + L1MC4 LINE L1 6614 6703 -1339 200 677 0 6 chr3 49574232 49574393 -177950185 + (TA)n Simple_repeat Simple_repeat 1 160 0 551 107 71 0 chr3 49574393 49574477 -177950101 - AluSg/x SINE Alu -5 305 216 321 107 250 0 chr3 49574477 49574533 -177950045 + AluJ/FLAM SINE Alu 31 100 -202 1716 249 2 30 chr3 49574610 49574817 -177949761 - L1MEc LINE L1 -2275 4682 4471 1904 139 3 40 chr3 49574817 49575141 -177949437 - AluSx SINE Alu 0 312 1 1716 249 2 30 chr3 49575141 49575431 -177949147 - L1MEc LINE L1 -2486 4471 4199 1117 231 28 8 chr3 49575824 49576184 -177948394 - L1MEc LINE L1 -2848 4109 3743 348 234 0 0 chr3 49576190 49576284 -177948294 + (TATG)n Simple_repeat Simple_repeat 3 96 0 1140 173 62 0 chr3 49576284 49576492 -177948086 - AluJb SINE Alu -14 298 78 1280 82 29 0 chr3 49576492 49576662 -177947916 - MER30 DNA MER1_type -55 175 1 1905 231 69 10 chr3 49576663 49577252 -177947326 - L1MEc LINE L1 -3417 3540 2924 2189 125 133 18 chr3 49577252 49577636 -177946942 - MSTA LTR MaLR 0 428 1 1905 231 69 10 chr3 49577636 49577684 -177946894 - L1MEc LINE L1 -4033 2924 2880 * 4854 147 6 30 chr3 49577654 49578150 -177946428 - L1PB4 LINE L1 0 6967 6498 1721 143 31 21 chr3 49578150 49578436 -177946142 - AluJo SINE Alu -17 295 7 4854 147 6 30 chr3 49578436 49578782 -177945796 - L1PB4 LINE L1 -469 6498 6145 2245 77 7 0 chr3 49578783 49579068 -177945510 + AluY SINE Alu 1 287 -24 5635 82 9 5 chr3 49579101 49579872 -177944706 - L1MA2 LINE L1 -6 6298 5525 1891 149 7 3 chr3 49579889 49580185 -177944393 - AluSx SINE Alu -15 297 1 1569 206 10 0 chr3 49580191 49580487 -177944091 - AluJb SINE Alu -13 299 1 2736 160 34 32 chr3 49580487 49581076 -177943502 - L1PB4 LINE L1 -2357 3789 3200 716 184 0 37 chr3 49581076 49581212 -177943366 - FLAM_C SINE Alu -2 131 1 247 197 70 14 chr3 49581212 49581283 -177943295 - L1MEc LINE L1 -6414 543 469 15642 127 31 11 chr3 49584838 49587318 -177937260 + Tigger2 DNA MER2_type 190 2718 0 538 235 40 20 chr3 49587905 49588054 -177936524 - L1MEc LINE L1 -6692 167 16 * 3005 228 134 12 chr3 49588046 49588631 -177935947 + L1MEc LINE L1 1966 2478 -3737 2178 201 53 16 chr3 49588631 49589118 -177935460 - MLT1D LTR MaLR 0 505 1 3005 228 134 12 chr3 49589118 49589852 -177934726 + L1MEc LINE L1 2478 3391 -2824 633 161 89 5 chr3 49589931 49590055 -177934523 - MLT1C LTR MaLR 0 467 356 3710 104 100 12 chr3 49590055 49590623 -177933955 + THE1C-int LTR MaLR 963 1580 0 1966 133 53 58 chr3 49590623 49591000 -177933578 + THE1C LTR MaLR 1 375 0 1674 172 6 24 chr3 49591232 49591563 -177933015 + L1PA15-16 LINE L1 2546 2870 -3979 1486 187 22 50 chr3 49591627 49591948 -177932630 + AluJb SINE Alu 1 312 0 541 252 100 100 chr3 49592173 49592538 -177932040 - MLT1J1 LTR MaLR -22 424 57 1701 123 0 0 chr3 49592538 49592773 -177931805 + AluSx SINE Alu 5 239 -73 541 252 100 100 chr3 49592773 49592796 -177931782 - MLT1J1 LTR MaLR -388 58 36 186 209 163 0 chr3 49592926 49592969 -177931609 + L2 LINE L2 3221 3270 -2 2240 138 18 9 chr3 49593177 49593517 -177931061 + MER61A LTR ERV1 1 343 0 1374 236 77 29 chr3 49593753 49594197 -177930381 + L1ME2 LINE L1 5678 6142 -22 368 207 49 12 chr3 49594416 49594498 -177930080 + MLT1L LTR MaLR 168 252 -363 341 176 40 27 chr3 49594614 49594688 -177929890 + MIR SINE MIR 111 185 -77 340 280 20 30 chr3 49594691 49594791 -177929787 - L2 LINE L2 -2 3311 3213 2743 3 0 0 chr3 49594846 49595148 -177929430 - AluYa5 SINE Alu -9 302 1 1563 180 80 30 chr3 49595195 49595595 -177928983 - LTR37A LTR ERV1 0 426 7 196 315 27 27 chr3 49595722 49595833 -177928745 - L2 LINE L2 -254 3059 2949 1321 248 108 68 chr3 49596046 49596159 -177928419 - MER67B LTR ERV1 -13 648 541 2804 9 0 3 chr3 49596159 49596478 -177928100 - AluYb8 SINE Alu 0 318 1 1321 248 108 68 chr3 49596478 49596985 -177927593 - MER67B LTR ERV1 -120 541 3 473 207 0 0 chr3 49596985 49597061 -177927517 - MER67A LTR ERV1 -460 83 8 1705 156 9 19 chr3 49597063 49597378 -177927200 + AluJo SINE Alu 1 312 0 769 217 244 11 chr3 49597450 49597814 -177926764 - LTR16A1 LTR ERVL 0 457 9 3686 102 24 3 chr3 49598579 49599367 -177925211 + MER4D LTR ERV1 1 859 -13 1860 132 81 31 chr3 49599367 49599724 -177924854 - THE1C LTR MaLR 0 375 1 3920 131 10 41 chr3 49599724 49600041 -177924537 - THE1C-int LTR MaLR 0 1580 1254 393 22 0 0 chr3 49600041 49600087 -177924491 + (TG)n Simple_repeat Simple_repeat 1 46 0 * 396 0 0 0 chr3 49600086 49600130 -177924448 + (GA)n Simple_repeat Simple_repeat 1 44 0 3920 131 10 41 chr3 49600087 49600131 -177924447 - THE1C-int LTR MaLR -326 1254 1210 1632 123 46 15 chr3 49600131 49600392 -177924186 - AluSx SINE Alu -37 275 7 3920 131 10 41 chr3 49600392 49600700 -177923878 - THE1C-int LTR MaLR -370 1210 973 1786 167 67 22 chr3 49600713 49601072 -177923506 - THE1C LTR MaLR 0 375 1 257 355 55 0 chr3 49601426 49601536 -177923042 + MIR SINE MIR 22 137 -125 918 223 40 32 chr3 49601610 49601861 -177922717 - MIR SINE MIR -6 256 4 1974 215 28 50 chr3 49602612 49603147 -177921431 + L1ME2 LINE L1 5508 6030 -134 894 280 115 36 chr3 49603307 49603758 -177920820 + MLT1J LTR MaLR 1 511 0 742 243 30 116 chr3 49603777 49604045 -177920533 + MIR SINE MIR 18 262 0 625 155 0 0 chr3 49604388 49604491 -177920087 + MER53 DNA DNA 1 103 -86 2039 133 0 0 chr3 49604491 49604792 -177919786 - AluSx SINE Alu -11 301 1 538 225 78 21 chr3 49606393 49606535 -177918043 + L2 LINE L2 3161 3310 -3 444 267 124 19 chr3 49606639 49606800 -177917778 - MIR SINE MIR -49 213 36 1178 113 26 226 chr3 49606863 49607059 -177917519 - L1MB8 LINE L1 -60 6118 5885 2085 106 14 0 chr3 49607059 49607351 -177917227 - AluSq SINE Alu -17 296 1 1557 174 0 4 chr3 49607351 49607632 -177916946 - AluJb SINE Alu -4 308 29 1178 113 26 226 chr3 49607632 49607850 -177916728 - L1MB8 LINE L1 -291 5887 5786 2627 162 38 73 chr3 49608022 49608459 -177916119 - MER74A LTR ERVL 0 558 144 1723 106 60 63 chr3 49608459 49608761 -177915817 - AluSx SINE Alu -1 311 11 2627 162 38 73 chr3 49608761 49608896 -177915682 - MER74A LTR ERVL -414 144 6 22 0 0 0 chr3 49611148 49611170 -177913408 + AT_rich Low_complexity Low_complexity 1 22 0 424 163 255 0 chr3 49611221 49611319 -177913259 + FLAM_A SINE Alu 7 129 -13 252 0 0 0 chr3 49611410 49611438 -177913140 + (TG)n Simple_repeat Simple_repeat 2 29 0 2353 179 78 22 chr3 49611465 49611967 -177912611 - L1ME3 LINE L1 -1 6161 5632 286 208 0 0 chr3 49611971 49612019 -177912559 - L1ME3 LINE L1 -591 5571 5524 248 367 101 13 chr3 49612080 49612238 -177912340 + MIR3 SINE MIR 1 172 -36 2005 191 73 39 chr3 49612622 49613087 -177911491 - MLT1H1 LTR MaLR -48 507 27 482 264 29 13 chr3 49613091 49613250 -177911328 + L1MA9 LINE L1 6131 6294 -6 1960 236 42 7 chr3 49613745 49614177 -177910401 - LTR16A LTR ERVL -2 448 2 891 205 0 0 chr3 49614399 49614565 -177910013 + LTR16A LTR ERVL 250 415 -35 1799 202 14 19 chr3 49615007 49615369 -177909209 - MLT1A1 LTR MaLR 0 365 6 475 221 189 0 chr3 49615394 49615516 -177909062 + MER3 DNA MER1_type 5 149 -60 403 257 29 9 chr3 49615555 49615660 -177908918 + MER5A DNA MER1_type 6 112 -77 360 0 0 0 chr3 49617579 49617619 -177906959 + (TG)n Simple_repeat Simple_repeat 1 40 0 2142 216 81 62 chr3 49618149 49618390 -177906188 - L1MC5 LINE L1 -35 7926 7691 2027 112 0 0 chr3 49618390 49618711 -177905867 - AluSx SINE Alu 0 325 5 2142 216 81 62 chr3 49618711 49619387 -177905191 - L1MC5 LINE L1 -270 7691 6991 1416 137 0 21 chr3 49619509 49619742 -177904836 - AluSg/x SINE Alu 0 312 85 244 262 187 28 chr3 49619744 49619851 -177904727 - MIR SINE MIR -118 144 21 26 0 0 0 chr3 49620464 49620490 -177904088 + AT_rich Low_complexity Low_complexity 1 26 0 222 167 83 0 chr3 49620879 49620927 -177903651 + L2 LINE L2 3261 3312 -1 367 150 0 0 chr3 49620962 49621022 -177903556 + MER89 LTR ERV1 1 60 -499 455 167 13 0 chr3 49621074 49621152 -177903426 + MER89 LTR ERV1 301 379 -180 1750 84 0 13 chr3 49621152 49621389 -177903189 - AluSg SINE Alu -13 297 64 759 263 95 62 chr3 49621407 49621765 -177902813 - MLT1K LTR MaLR -88 500 131 228 224 90 15 chr3 49621710 49621777 -177902801 - LTR67 LTR ERVL -378 179 108 * 308 221 0 26 chr3 49622338 49622415 -177902163 + MLT1K LTR MaLR 141 215 -373 438 277 10 0 chr3 49622415 49622516 -177902062 + MER5A DNA MER1_type 88 189 0 521 231 187 0 chr3 49623104 49623238 -177901340 - MER5A DNA MER1_type 0 189 31 496 234 182 26 chr3 49623261 49623415 -177901163 - MER5B DNA MER1_type 0 178 1 353 296 49 28 chr3 49623570 49623712 -177900866 - MIR SINE MIR -87 175 31 246 283 283 9 chr3 49623764 49623870 -177900708 + MIR SINE MIR 72 206 -56 376 179 115 0 chr3 49624393 49624471 -177900107 - MER81 DNA DNA -27 87 1 473 317 138 39 chr3 49625011 49625396 -177899182 - MLT1L LTR MaLR -3 612 190 310 209 9 29 chr3 49626670 49626775 -177897803 + CT-rich Low_complexity Low_complexity 4 106 0 905 263 65 5 chr3 49626811 49627028 -177897550 - MIR SINE MIR -13 249 20 760 327 75 20 chr3 49627209 49627754 -177896824 - L1MC4 LINE L1 -169 7873 7299 1043 232 82 44 chr3 49627794 49628161 -177896417 - MLT1K LTR MaLR -18 570 190 382 248 198 25 chr3 49629160 49629315 -177895263 + MLT1K LTR MaLR 329 528 -60 351 0 0 0 chr3 49629315 49629354 -177895224 + (TG)n Simple_repeat Simple_repeat 2 40 0 382 248 198 25 chr3 49629354 49629400 -177895178 + MLT1K LTR MaLR 528 565 -23 425 200 0 13 chr3 49629503 49629658 -177894920 + CT-rich Low_complexity Low_complexity 1 152 0 367 321 131 0 chr3 49629908 49630076 -177894502 + MIR SINE MIR 73 262 0 378 260 49 98 chr3 49630514 49630708 -177893870 + L1MEd LINE L1 755 924 -5195 1942 129 13 16 chr3 49630708 49631039 -177893539 + AluJb SINE Alu 1 312 0 378 260 49 98 chr3 49631039 49631213 -177893365 + L1MEd LINE L1 924 1105 -5014 457 297 73 65 chr3 49631369 49631615 -177892963 + MIR SINE MIR 7 254 -8 910 225 128 79 chr3 49632475 49632982 -177891596 - MLT1H LTR MaLR 0 549 18 351 303 10 0 chr3 49633339 49633438 -177891140 - MIR3 SINE MIR -21 187 88 35 41 0 0 chr3 49633985 49634034 -177890544 + AT_rich Low_complexity Low_complexity 1 49 0 2237 221 73 32 chr3 49634103 49634668 -177889910 + MLT1E2 LTR MaLR 39 626 0 896 304 123 31 chr3 49635064 49635843 -177888735 - L2 LINE L2 0 3313 2454 405 100 0 43 chr3 49635937 49636007 -177888571 - L1PA6 LINE L1 -5 6149 6083 698 243 14 91 chr3 49636060 49636270 -177888308 - MIR SINE MIR -51 211 18 544 214 268 0 chr3 49636417 49636585 -177887993 + MER20 DNA MER1_type 7 219 0 310 287 35 11 chr3 49637374 49637461 -177887117 - MIR SINE MIR -117 145 57 2522 71 0 3 chr3 49638872 49639182 -177885396 - AluY SINE Alu -2 309 1 196 103 0 0 chr3 49639352 49639381 -177885197 - L2 LINE L2 -19 3294 3266 738 244 25 50 chr3 49639401 49639643 -177884935 - MIR SINE MIR -22 240 5 2482 54 0 0 chr3 49640006 49640300 -177884278 + AluY SINE Alu 1 294 -17 29 47 0 0 chr3 49640475 49640518 -177884060 + AT_rich Low_complexity Low_complexity 1 43 0 275 96 19 0 chr3 49640655 49640707 -177883871 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 452 197 79 16 chr3 49640778 49640905 -177883673 + L1MEd LINE L1 19 153 -5966 1939 146 28 3 chr3 49641778 49641897 -177882681 + AluSx SINE Alu 1 116 -196 183 42 0 0 chr3 49641897 49641921 -177882657 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1939 146 28 3 chr3 49641921 49642088 -177882490 + AluSx SINE Alu 116 294 -18 1762 235 112 5 chr3 49642366 49643004 -177881574 - L1ME3A LINE L1 -276 5894 5188 210 71 0 0 chr3 49643021 49643049 -177881529 + (A)n Simple_repeat Simple_repeat 1 28 0 1020 172 0 0 chr3 49643049 49643212 -177881366 - AluJo SINE Alu -30 282 120 678 269 45 30 chr3 49643368 49643636 -177880942 - L1ME3A LINE L1 -1948 4198 3927 2170 108 0 20 chr3 49643840 49644136 -177880442 + AluSx SINE Alu 2 291 -21 235 282 13 13 chr3 49644649 49644727 -177879851 + HsTC2 DNA Tc2 2 79 -1819 329 284 39 0 chr3 49644853 49644955 -177879623 - MIR SINE MIR -73 189 84 241 26 26 26 chr3 49645292 49645331 -177879247 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 246 108 0 0 chr3 49645358 49645395 -177879183 - MADE1 DNA Mariner 0 80 44 452 147 0 0 chr3 49645395 49645463 -177879115 + MADE1 DNA Mariner 13 80 0 220 337 65 0 chr3 49645473 49645565 -177879013 + L2 LINE L2 3173 3270 -2 822 288 68 47 chr3 49645766 49646401 -177878177 - L1MC4a LINE L1 -1907 5901 5254 21 89 0 0 chr3 49646635 49646691 -177877887 + AT_rich Low_complexity Low_complexity 1 56 0 209 290 0 75 chr3 49647597 49647690 -177876888 + MIR SINE MIR 41 126 -82 204 196 0 36 chr3 49648297 49648353 -177876225 + (TTA)n Simple_repeat Simple_repeat 2 55 0 458 232 58 39 chr3 49648614 49648769 -177875809 - L1ME4a LINE L1 -5 6116 5959 2123 112 23 7 chr3 49649267 49649570 -177875008 - AluSx SINE Alu -4 308 1 345 280 56 35 chr3 49649884 49650027 -177874551 - L1ME4a LINE L1 -210 5911 5766 274 275 116 22 chr3 49650829 49650967 -177873611 - MIR SINE MIR -55 207 57 2193 120 0 3 chr3 49651263 49651563 -177873015 + AluSx SINE Alu 1 299 -13 406 221 25 33 chr3 49651563 49651685 -177872893 + MER5A DNA MER1_type 44 164 -25 252 0 0 0 chr3 49651990 49652018 -177872560 + (TG)n Simple_repeat Simple_repeat 1 28 0 3180 265 154 42 chr3 49652106 49653184 -177871394 + L2 LINE L2 373 1328 -1986 1874 148 23 13 chr3 49653184 49653488 -177871090 + AluJb SINE Alu 1 307 -5 3180 265 154 42 chr3 49653488 49654170 -177870408 + L2 LINE L2 1328 2332 -982 317 223 191 0 chr3 49654623 49654717 -177869861 - ERVL LTR ERVL -1251 4513 4402 631 65 0 0 chr3 49654733 49654810 -177869768 + AluY SINE Alu 218 294 -17 2702 277 99 14 chr3 49654925 49655848 -177868730 - ERVL LTR ERVL -1529 4235 3235 381 284 54 54 chr3 49658068 49658216 -177866362 + MIR SINE MIR 53 200 -62 835 223 81 30 chr3 49658380 49658676 -177865902 - L1MC5 LINE L1 -44 7917 7607 1902 186 128 11 chr3 49658749 49658956 -177865622 + MLT1D LTR MaLR 1 182 -323 2308 107 0 0 chr3 49658956 49659255 -177865323 + AluSx SINE Alu 5 303 -9 1902 186 128 11 chr3 49659255 49659499 -177865079 + MLT1D LTR MaLR 182 505 0 339 298 50 2 chr3 49659580 49659708 -177864870 - MIR SINE MIR -65 143 34 2064 151 11 20 chr3 49659777 49660128 -177864450 - MER7A DNA MER2_type 0 346 1 21 0 0 0 chr3 49660150 49660171 -177864407 + AT_rich Low_complexity Low_complexity 1 21 0 5045 245 100 50 chr3 49660289 49662604 -177861974 - HAL1 LINE L1 -1 2506 77 235 265 103 34 chr3 49662637 49662754 -177861824 + MIR SINE MIR 23 147 -61 281 244 15 107 chr3 49664125 49664256 -177860322 - MLT1H LTR MaLR 0 549 431 232 135 0 0 chr3 49664403 49664440 -177860138 - MLT1I LTR MaLR -275 134 98 673 137 8 24 chr3 49664654 49664778 -177859800 + MER5A DNA MER1_type 1 122 -67 237 313 12 12 chr3 49664990 49665073 -177859505 + MIR SINE MIR 63 145 -117 624 196 149 7 chr3 49665164 49665312 -177859266 - MLT1A2 LTR MaLR 0 365 197 1169 150 24 34 chr3 49665379 49665586 -177858992 - MLT1A2 LTR MaLR -166 208 4 814 256 135 21 chr3 49665827 49666303 -177858275 + MLT1G1 LTR MaLR 10 592 -3 416 273 36 88 chr3 49666338 49666599 -177857979 + MIR SINE MIR 16 256 -6 387 0 0 0 chr3 49667673 49667716 -177856862 + (CA)n Simple_repeat Simple_repeat 2 44 0 517 209 173 0 chr3 49667719 49667829 -177856749 - Tigger3(Golem) DNA MER2_type -1 3028 2900 232 258 0 0 chr3 49669397 49669463 -177855115 - MIR SINE MIR -65 197 132 1783 135 49 24 chr3 49670231 49670519 -177854059 + AluJb SINE Alu 1 295 -17 329 219 19 76 chr3 49670694 49670799 -177853779 - Charlie8 DNA MER1_type -2233 184 86 359 333 0 8 chr3 49671010 49671130 -177853448 + MIR SINE MIR 13 131 -131 2078 125 7 13 chr3 49672114 49672417 -177852161 - AluSq SINE Alu -12 301 1 1124 283 61 27 chr3 49672523 49672930 -177851648 + LTR16C LTR ERVL 52 472 -19 272 295 238 8 chr3 49673003 49673125 -177851453 - MIR SINE MIR -81 181 32 379 215 0 13 chr3 49674513 49674592 -177849986 - LTR67 LTR ERVL -2 555 478 328 230 74 59 chr3 49674697 49674832 -177849746 - MLT1I LTR MaLR 0 409 273 738 214 0 0 chr3 49675308 49675439 -177849139 - FLAM_A SINE Alu -1 132 2 492 288 60 46 chr3 49676336 49676683 -177847895 + L1MC4a LINE L1 5279 5630 -532 459 184 6 152 chr3 49676919 49677077 -177847501 - MER119 DNA MER1_type -2 581 447 494 268 43 6 chr3 49677200 49677364 -177847214 + MIR SINE MIR 12 181 -81 255 238 48 12 chr3 49677429 49677513 -177847065 + L1ME4a LINE L1 6024 6110 -11 285 259 25 12 chr3 49678528 49678609 -177845969 + L2 LINE L2 3227 3308 -5 270 233 26 3 chr3 49679669 49679745 -177844833 + MLT1H LTR MaLR 75 137 -272 252 273 87 31 chr3 49680112 49680273 -177844305 - L1MC4 LINE L1 -276 7766 7597 2755 191 24 69 chr3 49680391 49680567 -177844011 - REP3 LTR ERV -7 555 373 818 154 15 0 chr3 49680567 49680697 -177843881 + FLAM_C SINE Alu 1 132 -1 2453 84 0 7 chr3 49680702 49681011 -177843567 + AluSq SINE Alu 7 313 0 2755 191 24 69 chr3 49681011 49681409 -177843169 - REP3 LTR ERV -193 369 1 344 304 23 32 chr3 49681519 49681740 -177842838 - L1MC4 LINE L1 -790 7252 7037 1482 256 121 55 chr3 49681759 49682577 -177842001 - L1MC4 LINE L1 -1 8041 7230 2410 139 5 14 chr3 49682577 49682945 -177841633 + MLT1A1 LTR MaLR 1 365 0 1482 256 121 55 chr3 49682945 49683323 -177841255 - L1MC4 LINE L1 -812 7230 6878 1356 121 19 9 chr3 49683379 49683594 -177840984 + L1MC1 LINE L1 6111 6327 -6 1084 167 37 51 chr3 49683595 49683811 -177840767 - AluJb SINE Alu -13 299 87 26 50 0 0 chr3 49683839 49683879 -177840699 + AT_rich Low_complexity Low_complexity 1 40 0 1526 241 77 110 chr3 49684009 49684971 -177839607 + L1MC4a LINE L1 5798 6722 -1086 2188 113 3 13 chr3 49684971 49685273 -177839305 + AluSx SINE Alu 1 299 -13 1526 241 77 110 chr3 49685273 49685390 -177839188 + L1MC4a LINE L1 6722 6841 -967 281 254 0 16 chr3 49685395 49685458 -177839120 + MER81 DNA DNA 21 82 -32 789 289 11 15 chr3 49685464 49685692 -177838886 - L1M3 LINE L1 -562 6583 6357 13901 113 10 12 chr3 49687622 49688391 -177836187 - Tigger1 DNA MER2_type -56 2362 1593 2251 114 3 0 chr3 49688391 49688690 -177835888 - AluSp SINE Alu -13 300 1 13901 113 10 12 chr3 49688690 49690274 -177834304 - Tigger1 DNA MER2_type -825 1593 1 443 226 8 0 chr3 49690469 49690602 -177833976 + GA-rich Low_complexity Low_complexity 3 136 0 844 228 182 29 chr3 49692149 49692456 -177832122 + LTR16C LTR ERVL 137 490 -1 2458 165 55 29 chr3 49693088 49693580 -177830998 + MLT1D LTR MaLR 1 505 0 400 202 42 92 chr3 49694208 49694277 -177830301 + MER94 DNA DNA 3 65 -69 2341 101 0 7 chr3 49694277 49694583 -177829995 + AluSx SINE Alu 1 304 -8 400 202 42 92 chr3 49694583 49694632 -177829946 + MER94 DNA DNA 65 115 -19 595 208 26 32 chr3 49694851 49695005 -177829573 + MER103 DNA DNA 2 154 -12 1597 214 3 3 chr3 49695792 49696217 -177828361 + AluJo SINE Alu 3 427 0 279 54 0 0 chr3 49696516 49696553 -177828025 + (CA)n Simple_repeat Simple_repeat 2 38 0 2574 57 0 0 chr3 49698471 49698772 -177825806 + AluY SINE Alu 1 301 -10 1293 175 16 29 chr3 49699081 49699327 -177825251 - MER41B LTR ERV1 -260 375 133 2154 84 0 44 chr3 49700430 49700726 -177823852 - AluSg SINE Alu -15 295 13 2235 122 0 0 chr3 49701179 49701474 -177823104 + AluSx SINE Alu 1 295 -17 599 231 29 54 chr3 49701474 49701890 -177822688 - L1M3 LINE L1 -743 6214 5839 2212 116 0 0 chr3 49701891 49702192 -177822386 - AluSx SINE Alu -11 301 1 330 273 71 84 chr3 49702217 49702726 -177821852 - L1M3 LINE L1 -1254 5703 5202 901 157 6 6 chr3 49704768 49704946 -177819632 + CT-rich Low_complexity Low_complexity 3 180 0 290 318 82 56 chr3 49705094 49705289 -177819289 - L2 LINE L2 -429 2885 2686 307 175 38 38 chr3 49706508 49706588 -177817990 + MER116 DNA Mariner 1 80 0 331 190 76 0 chr3 49707589 49707668 -177816910 + AluJb SINE Alu 63 147 -155 2362 78 0 33 chr3 49707985 49708291 -177816287 - AluSg SINE Alu -13 297 2 224 335 150 6 chr3 49709054 49709227 -177815351 + L3 LINE CR1 695 892 -685 1344 225 162 13 chr3 49709229 49709624 -177814954 - MER21B LTR ERV1 -409 454 1 21 0 0 0 chr3 49710064 49710085 -177814493 + AT_rich Low_complexity Low_complexity 1 21 0 1029 172 6 11 chr3 49710099 49710273 -177814305 - AluJo SINE Alu -54 258 86 248 281 61 9 chr3 49710655 49710769 -177813809 + L1ME4a LINE L1 5991 6110 -11 788 127 76 0 chr3 49711558 49711676 -177812902 + FLAM_C SINE Alu 2 128 -5 345 262 19 19 chr3 49712013 49712120 -177812458 + L1ME LINE L1 5538 5644 -477 1167 256 98 41 chr3 49712234 49712621 -177811957 + MLT1I LTR MaLR 1 409 0 369 0 0 0 chr3 49712827 49712868 -177811710 + (TG)n Simple_repeat Simple_repeat 2 42 0 294 307 11 11 chr3 49713347 49713435 -177811143 + MER5A DNA MER1_type 101 188 -1 2108 143 0 0 chr3 49713772 49714080 -177810498 - AluSq SINE Alu -5 308 1 1801 135 0 89 chr3 49714084 49714277 -177810301 - AluJb SINE Alu -9 303 149 1495 43 0 32 chr3 49714277 49714463 -177810115 - L1PA8 LINE L1 0 6172 5993 1801 135 0 89 chr3 49714463 49714596 -177809982 - AluJb SINE Alu -163 149 6 845 285 107 55 chr3 49714625 49715967 -177808611 - L1M3 LINE L1 -2145 4812 3401 248 167 0 0 chr3 49715984 49716020 -177808558 - U2 snRNA snRNA -152 36 1 370 208 61 39 chr3 49716053 49716155 -177808423 - MLT1H LTR MaLR 0 585 454 1659 205 66 43 chr3 49716448 49716887 -177807691 + MLT1C LTR MaLR 1 449 -18 1383 184 28 4 chr3 49716887 49717137 -177807441 - MLT1A1 LTR MaLR 0 365 110 568 264 51 25 chr3 49717629 49717826 -177806752 + L1ME3A LINE L1 5963 6164 -6 21 36 0 0 chr3 49717831 49717859 -177806719 + AT_rich Low_complexity Low_complexity 1 28 0 2095 130 0 0 chr3 49718022 49718314 -177806264 + AluSq SINE Alu 1 292 -21 549 307 56 33 chr3 49718771 49719041 -177805537 + LTR16C LTR ERVL 213 488 -3 341 323 138 35 chr3 49719386 49719950 -177804628 - L2 LINE L2 -976 2338 1717 222 268 158 0 chr3 49720035 49720117 -177804461 - MIR SINE MIR -128 134 40 21 0 0 0 chr3 49720894 49720915 -177803663 + AT_rich Low_complexity Low_complexity 1 21 0 2263 110 0 7 chr3 49721720 49722021 -177802557 + AluSx SINE Alu 1 299 -13 348 276 68 25 chr3 49724628 49724791 -177799787 - L1M3 LINE L1 -6661 198 29 209 213 0 0 chr3 49724815 49724862 -177799716 + T-rich Low_complexity Low_complexity 1 47 0 1378 161 53 99 chr3 49724870 49725212 -177799366 - MLT1C LTR MaLR 0 467 142 2773 161 11 5 chr3 49725213 49725655 -177798923 + MER65A LTR ERV1 1 445 0 386 323 0 8 chr3 49725742 49725869 -177798709 + MER65A-int LTR ERV1 60 185 -4686 1516 227 27 44 chr3 49725934 49726339 -177798239 + MER65A-int LTR ERV1 375 772 -4099 861 152 0 0 chr3 49726379 49726504 -177798074 - AluJb SINE Alu -187 125 1 1619 174 47 12 chr3 49726565 49726887 -177797691 + MER65A-int LTR ERV1 861 1193 -3678 764 210 96 87 chr3 49726887 49727011 -177797567 + LTR57-int LTR ERVL 414 863 -4480 343 149 138 0 chr3 49726995 49727082 -177797496 + MER65A-int LTR ERV1 2427 2525 -2346 * 6244 173 44 30 chr3 49727071 49728465 -177796113 + MER65-int LTR ERV1 1187 2525 -2346 335 239 54 0 chr3 49728475 49728567 -177796011 + MER65-int LTR ERV1 1541 1637 -6483 5158 150 16 34 chr3 49728569 49728630 -177795948 + L1PB4 LINE L1 5077 5138 -1018 2223 68 0 0 chr3 49728630 49728893 -177795685 - AluY SINE Alu -19 292 30 5158 150 16 34 chr3 49728893 49729701 -177794877 + L1PB4 LINE L1 5138 5923 -233 1831 162 0 0 chr3 49729701 49729972 -177794606 + AluSx SINE Alu 24 294 -18 5158 150 16 34 chr3 49729972 49730189 -177794389 + L1PB4 LINE L1 5923 6143 -13 252 77 0 0 chr3 49730194 49730233 -177794345 + L1PB4 LINE L1 6116 6154 -2 1554 154 22 112 chr3 49730265 49730857 -177793721 + MER65-int LTR ERV1 1621 2300 -4458 2265 94 0 10 chr3 49730857 49731155 -177793423 + AluY SINE Alu 1 295 -16 1554 154 22 112 chr3 49731155 49731277 -177793301 + MER65-int LTR ERV1 2300 2431 -4327 684 177 113 27 chr3 49731540 49731726 -177792852 + MER65-int LTR ERV1 3536 3737 -2861 1879 168 100 131 chr3 49731802 49732176 -177792402 + MER65-int LTR ERV1 2477 2861 -3470 1951 173 0 0 chr3 49732176 49732477 -177792101 - AluJb SINE Alu -11 301 1 1879 168 100 131 chr3 49732477 49732996 -177791582 + MER65-int LTR ERV1 2861 3395 -2936 1838 168 30 0 chr3 49732996 49733299 -177791279 - AluSx SINE Alu 0 312 1 1879 168 100 131 chr3 49733299 49733532 -177791046 + MER65-int LTR ERV1 3395 4855 -1476 1307 188 0 4 chr3 49733533 49733762 -177790816 + AluJb SINE Alu 1 228 -84 627 173 0 0 chr3 49733792 49733896 -177790682 + AluSg/x SINE Alu 205 308 -4 1027 191 89 102 chr3 49733896 49734273 -177790305 + MER65-int LTR ERV1 3083 3959 -977 1787 223 44 5 chr3 49734353 49734781 -177789797 + MER65-int LTR ERV1 3604 4082 -789 8489 109 63 8 chr3 49734781 49737594 -177786984 + L1M1 LINE L1 14 3021 -4544 2126 124 0 3 chr3 49737594 49737892 -177786686 + AluSx SINE Alu 1 297 -15 415 278 71 82 chr3 49737899 49738277 -177786301 - L1MC4 LINE L1 -291 7751 7378 21 57 0 0 chr3 49738314 49738349 -177786229 + AT_rich Low_complexity Low_complexity 1 35 0 375 351 99 0 chr3 49738502 49738653 -177785925 - L2 LINE L2 0 3272 3107 497 139 23 23 chr3 49739279 49739365 -177785213 + AluSg/x SINE Alu 214 299 -10 2141 108 3 17 chr3 49739384 49739681 -177784897 - AluSx SINE Alu -19 293 1 201 222 22 22 chr3 49739729 49739774 -177784804 - MIR3 SINE MIR -20 188 144 434 244 32 19 chr3 49740306 49740462 -177784116 + L1ME2 LINE L1 5929 6086 -78 598 290 123 76 chr3 49741332 49741794 -177782784 - MLT1K LTR MaLR -6 582 99 2388 126 86 5 chr3 49742920 49743316 -177781262 - MSTA LTR MaLR 0 428 1 253 312 102 54 chr3 49743967 49744172 -177780406 + MLT1I LTR MaLR 68 282 -127 697 263 53 24 chr3 49744453 49744592 -177779986 - LTR16C LTR ERVL 0 491 341 988 172 187 68 chr3 49744592 49744918 -177779660 + MLT1A1 LTR MaLR 1 365 0 697 263 53 24 chr3 49744918 49745025 -177779553 - LTR16C LTR ERVL -150 341 238 338 309 38 65 chr3 49745898 49746238 -177778340 - HAL1 LINE L1 -906 1601 1271 1341 230 23 3 chr3 49746257 49746557 -177778021 - AluJo SINE Alu -6 306 1 226 194 16 16 chr3 49746707 49746769 -177777809 - L1ME LINE L1 -5179 1036 975 2428 141 27 43 chr3 49746887 49747326 -177777252 + Tigger2a DNA MER2_type 3 434 0 351 0 0 0 chr3 49748377 49748416 -177776162 + (CA)n Simple_repeat Simple_repeat 2 40 0 777 244 74 14 chr3 49748860 49749077 -177775501 - MIR SINE MIR -21 241 12 1665 208 0 6 chr3 49749155 49749506 -177775072 - AluJo SINE Alu 0 349 1 623 148 0 126 chr3 49749525 49749660 -177774918 - FLAM_C SINE Alu -15 118 1 438 224 133 49 chr3 49749675 49750017 -177774561 - L1ME LINE L1 -5256 949 699 316 300 140 38 chr3 49750334 49750627 -177773951 - L1ME LINE L1 -5994 402 80 1206 245 58 0 chr3 49750759 49750826 -177773752 - HsTC2c DNA Tc2 -1169 729 667 1974 135 27 7 chr3 49750826 49751152 -177773426 + AluSx SINE Alu 1 312 0 1206 245 58 0 chr3 49751152 49751361 -177773217 - HsTC2c DNA Tc2 -1231 667 437 2409 175 26 19 chr3 49751361 49751737 -177772841 + MSTB LTR MaLR 1 382 -44 2154 137 36 38 chr3 49751737 49752102 -177772476 - THE1B LTR MaLR 0 364 1 2409 175 26 19 chr3 49752102 49752148 -177772430 + MSTB LTR MaLR 382 426 0 1315 217 27 116 chr3 49752148 49752380 -177772198 - HsTC2c DNA Tc2 -1457 441 273 1764 124 84 4 chr3 49752380 49752655 -177771923 + AluSg SINE Alu 1 297 -13 1315 217 27 116 chr3 49752655 49752906 -177771672 - HsTC2c DNA Tc2 -1625 273 1 324 351 24 6 chr3 49753701 49753869 -177770709 - MIR SINE MIR -73 189 19 1506 159 0 9 chr3 49753963 49754196 -177770382 + AluJb SINE Alu 64 294 -18 205 209 47 0 chr3 49754878 49754921 -177769657 + GA-rich Low_complexity Low_complexity 4 48 0 2328 111 3 0 chr3 49755420 49755727 -177768851 - AluSx SINE Alu -2 310 3 918 160 13 0 chr3 49755748 49755904 -177768674 - L1PB4 LINE L1 0 6156 5999 225 163 0 0 chr3 49756238 49756287 -177768291 + (TG)n Simple_repeat Simple_repeat 2 50 0 235 279 136 19 chr3 49756664 49756818 -177767760 + LTR16A1 LTR ERVL 172 343 -114 182 200 271 24 chr3 49756863 49756948 -177767630 + MER5A DNA MER1_type 58 163 -26 1305 177 3 18 chr3 49756988 49757281 -177767297 - MER49 LTR ERV1 0 923 594 44780 42 1 1 chr3 49757282 49763434 -177761144 + L1PA3 LINE L1 4 6155 0 3783 137 33 13 chr3 49763451 49764050 -177760528 - MER49 LTR ERV1 -312 611 1 2007 121 66 33 chr3 49764068 49764431 -177760147 - THE1C LTR MaLR 0 375 1 10573 118 3 37 chr3 49764431 49766067 -177758511 - THE1C-int LTR MaLR 0 1580 1 1875 130 44 75 chr3 49766067 49766452 -177758126 - THE1C LTR MaLR 0 375 3 1280 301 68 2 chr3 49766816 49767212 -177757366 - LTR16C LTR ERVL -5 486 65 276 337 14 14 chr3 49767992 49768137 -177756441 - MIR3 SINE MIR -54 154 48 548 274 58 40 chr3 49768568 49768791 -177755787 + LTR16C LTR ERVL 248 474 -17 373 200 42 63 chr3 49769745 49769850 -177754728 - MER20B DNA MER1_type -4 779 673 2220 159 129 56 chr3 49769850 49770354 -177754224 + MER67A LTR ERV1 1 541 -2 373 200 42 63 chr3 49770354 49770411 -177754167 - MER20B DNA MER1_type -110 673 619 2294 131 5 30 chr3 49770411 49770784 -177753794 + THE1B LTR MaLR 1 364 0 373 200 42 63 chr3 49770784 49770810 -177753768 - MER20B DNA MER1_type -164 619 594 966 287 69 12 chr3 49770868 49771203 -177753375 + L1MC4a LINE L1 5568 5921 -1887 297 0 0 0 chr3 49771208 49771241 -177753337 + (TG)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr3 49771430 49771451 -177753127 + AT_rich Low_complexity Low_complexity 1 21 0 257 254 45 0 chr3 49772232 49772299 -177752279 - L2 LINE L2 -5 3308 3239 711 294 90 4 chr3 49772365 49772644 -177751934 + LTR16C LTR ERVL 27 329 -162 329 85 21 0 chr3 49772849 49772896 -177751682 + MLT1A1 LTR MaLR 1 48 -317 1673 251 62 66 chr3 49772900 49773241 -177751337 - LTR34 LTR ERV1 -4 695 355 2132 115 66 23 chr3 49773241 49773590 -177750988 - THE1B LTR MaLR 0 364 1 1673 251 62 66 chr3 49773590 49773842 -177750736 - LTR34 LTR ERV1 -344 355 104 371 153 22 16 chr3 49773820 49773909 -177750669 + MLT1A2 LTR MaLR 313 361 -13 * 352 248 29 19 chr3 49773987 49774092 -177750486 - MER4A LTR ERV1 -544 120 15 1170 153 19 153 chr3 49774119 49774486 -177750092 + MLT1A1 LTR MaLR 48 365 0 519 229 94 54 chr3 49774556 49774904 -177749674 + LTR16C LTR ERVL 97 491 0 428 253 48 20 chr3 49775840 49775986 -177748592 + L2 LINE L2 3107 3256 -57 1528 197 57 17 chr3 49776124 49776424 -177748154 + AluJb SINE Alu 1 312 0 204 241 165 13 chr3 49777968 49778047 -177746531 + L2 LINE L2 3222 3312 -1 376 183 0 0 chr3 49778097 49778168 -177746410 + MER5A DNA MER1_type 8 78 -111 2199 121 0 0 chr3 49778170 49778459 -177746119 + AluSx SINE Alu 5 293 -19 794 146 0 43 chr3 49778467 49778652 -177745926 + (GGAA)n Simple_repeat Simple_repeat 3 179 0 442 143 124 29 chr3 49779031 49779136 -177745442 + MER106B DNA MER1_type 923 1037 -22 189 0 0 0 chr3 49779339 49779360 -177745218 + (A)n Simple_repeat Simple_repeat 1 21 0 432 0 0 0 chr3 49780923 49780971 -177743607 + (TG)n Simple_repeat Simple_repeat 2 49 0 258 32 0 0 chr3 49780970 49781001 -177743577 + (TCCG)n Simple_repeat Simple_repeat 2 32 0 * 2081 129 0 7 chr3 49781383 49781678 -177742900 - AluSx SINE Alu -19 293 1 1690 180 0 17 chr3 49783104 49783404 -177741174 + AluJo SINE Alu 9 303 -9 703 211 32 43 chr3 49784787 49784972 -177739606 + MER3 DNA MER1_type 11 193 -16 1289 196 129 22 chr3 49785328 49785639 -177738939 - MER2 DNA MER2_type 0 344 1 376 191 78 61 chr3 49785675 49785790 -177738788 - Charlie4 DNA MER1_type -4 1957 1841 333 0 0 0 chr3 49785815 49785852 -177738726 + (TG)n Simple_repeat Simple_repeat 1 37 0 427 33 33 0 chr3 49785852 49785913 -177738665 + (GA)n Simple_repeat Simple_repeat 2 64 0 540 233 21 79 chr3 49785933 49786007 -177738571 - Charlie4 DNA MER1_type -1691 270 193 2415 90 0 31 chr3 49786007 49786329 -177738249 + AluSx SINE Alu 1 312 0 540 233 21 79 chr3 49786329 49786443 -177738135 - Charlie4 DNA MER1_type -1768 193 93 335 169 231 0 chr3 49787548 49787613 -177736965 - Tigger4(Zombi) DNA MER2_type -2651 80 1 1459 201 46 16 chr3 49788319 49788622 -177735956 + AluJb SINE Alu 1 312 0 2112 111 3 7 chr3 49790689 49790995 -177733583 + AluSx SINE Alu 1 305 -7 200 133 0 67 chr3 49791734 49791779 -177732799 - MIR SINE MIR -4 258 217 508 183 9 61 chr3 49791960 49792075 -177732503 + FLAM_C SINE Alu 3 111 -32 368 125 16 0 chr3 49792078 49792142 -177732436 + GA-rich Low_complexity Low_complexity 2 66 0 209 331 88 35 chr3 49792768 49792993 -177731585 + MIR SINE MIR 8 244 -18 2268 98 7 0 chr3 49793061 49793367 -177731211 + AluSx SINE Alu 2 309 -3 792 278 74 0 chr3 49794145 49794361 -177730217 - MIR SINE MIR -14 248 17 2146 107 3 0 chr3 49795124 49795423 -177729155 + AluSx SINE Alu 1 300 -12 2167 123 3 0 chr3 49796609 49796917 -177727661 + AluJb SINE Alu 1 309 -3 2234 108 0 6 chr3 49796917 49797232 -177727346 + AluSq SINE Alu 1 313 0 187 234 106 0 chr3 49798571 49798618 -177725960 + L2 LINE L2 3221 3272 0 2163 126 3 0 chr3 49799309 49799618 -177724960 - AluSx SINE Alu -2 310 1 724 247 42 34 chr3 49799628 49799867 -177724711 - MER112 DNA MER1_type -11 249 9 1650 126 101 0 chr3 49800315 49800592 -177723986 + AluSx SINE Alu 1 305 -7 824 117 7 35 chr3 49800789 49800934 -177723644 + FLAM_C SINE Alu 1 141 -2 2084 117 0 0 chr3 49801331 49801629 -177722949 - AluSx SINE Alu -14 298 1 491 126 92 0 chr3 49802003 49802090 -177722488 + L1MA3 LINE L1 6038 6132 -173 2130 109 10 0 chr3 49805760 49806064 -177718514 + AluSq SINE Alu 1 307 -6 387 379 64 0 chr3 49807177 49807380 -177717198 - MIR SINE MIR -12 250 35 5146 43 3 0 chr3 49808833 49809442 -177715136 - L1PA7 LINE L1 -7 6147 5537 244 151 94 19 chr3 49810733 49810786 -177713792 - MIR SINE MIR -58 150 94 374 196 323 8 chr3 49810865 49810998 -177713580 - MER5A DNA MER1_type -6 183 9 188 33 0 33 chr3 49811682 49811712 -177712866 + (TG)n Simple_repeat Simple_repeat 2 30 0 748 213 115 8 chr3 49811826 49812071 -177712507 - LTR37A LTR ERV1 0 426 198 1882 149 3 3 chr3 49812123 49812418 -177712160 - AluJb SINE Alu -11 301 7 289 273 141 23 chr3 49812679 49812807 -177711771 - MIR SINE MIR -88 174 32 225 0 0 0 chr3 49813249 49813274 -177711304 + (TCC)n Simple_repeat Simple_repeat 2 26 0 231 216 0 0 chr3 49813580 49813617 -177710961 - MIR SINE MIR -107 101 65 1190 268 44 84 chr3 49814372 49814620 -177709958 + L2 LINE L2 2818 3038 -275 807 180 0 0 chr3 49814620 49814748 -177709830 + FLAM_A SINE Alu 2 129 -4 1190 268 44 84 chr3 49814748 49814999 -177709579 + L2 LINE L2 3037 3297 -16 204 97 0 0 chr3 49815002 49815033 -177709545 + (TTAA)n Simple_repeat Simple_repeat 2 32 0 2185 96 10 0 chr3 49815333 49815636 -177708942 + AluSp SINE Alu 1 306 -7 290 247 21 21 chr3 49815684 49815777 -177708801 + L1ME LINE L1 5694 5786 -335 2291 217 28 51 chr3 49816735 49816927 -177707651 - L1MDa LINE L1 -4549 1991 1796 1892 129 0 7 chr3 49816927 49817250 -177707328 + AluJb SINE Alu 11 331 0 2291 217 28 51 chr3 49817250 49817777 -177706801 - L1MDa LINE L1 -4744 1796 1312 905 136 109 0 chr3 49817962 49818109 -177706469 + AluSg/x SINE Alu 125 287 -23 958 188 43 24 chr3 49818109 49818317 -177706261 - L1MD2 LINE L1 -61 6298 6087 865 107 25 0 chr3 49818391 49818513 -177706065 + AluSq SINE Alu 109 233 -80 722 254 16 26 chr3 49818515 49818708 -177705870 - MIR SINE MIR -14 248 58 438 206 65 98 chr3 49818761 49818945 -177705633 - MIR SINE MIR -50 212 35 2130 110 0 0 chr3 49819443 49819743 -177704835 - AluSx SINE Alu -12 300 1 266 278 83 35 chr3 49819997 49820166 -177704412 - L2 LINE L2 -549 2765 2589 2145 65 41 14 chr3 49821492 49821782 -177702796 + AluY SINE Alu 1 298 -13 1051 68 0 0 chr3 49822919 49823052 -177701526 - AluSp/q SINE Alu -14 299 167 328 212 0 15 chr3 49823053 49823119 -177701459 - MIR SINE MIR -58 150 86 1093 170 110 33 chr3 49823135 49823435 -177701143 + L1MB7 LINE L1 5635 5957 -227 771 114 0 0 chr3 49823484 49823589 -177700989 + AluSq/x SINE Alu 2 106 -207 286 125 21 0 chr3 49823744 49823792 -177700786 + L1MA3 LINE L1 6159 6207 -98 1055 175 11 0 chr3 49823813 49823996 -177700582 - AluJo SINE Alu 0 312 128 801 153 0 0 chr3 49824046 49824170 -177700408 - AluJo SINE Alu -188 124 1 731 102 9 0 chr3 49824171 49824279 -177700299 + L1MA3 LINE L1 6197 6305 0 21 57 0 0 chr3 49824290 49824325 -177700253 + AT_rich Low_complexity Low_complexity 1 35 0 732 169 0 52 chr3 49824481 49824617 -177699961 + FLAM_C SINE Alu 1 129 -4 403 183 0 0 chr3 49825404 49825464 -177699114 + AluJo SINE Alu 2 61 -251 1702 155 3 3 chr3 49825521 49825829 -177698749 - AluJb SINE Alu 0 308 1 430 203 13 0 chr3 49825830 49825909 -177698669 + AluJo SINE Alu 55 134 -178 236 217 67 0 chr3 49829999 49830059 -177694519 + MIR SINE MIR 154 217 -45 353 270 131 7 chr3 49830118 49830255 -177694323 + MIR SINE MIR 60 213 -49 970 108 22 103 chr3 49830941 49831048 -177693530 - MER5A DNA MER1_type -18 171 84 2309 81 0 0 chr3 49831048 49831346 -177693232 - AluSg1 SINE Alu -11 298 1 970 108 22 103 chr3 49831346 49831423 -177693155 - MER5A DNA MER1_type -105 84 2 463 278 133 17 chr3 49831423 49831602 -177692976 + MIR SINE MIR 8 207 -55 208 176 29 0 chr3 49832316 49832384 -177692194 + (TA)n Simple_repeat Simple_repeat 2 71 0 447 229 195 0 chr3 49832529 49832647 -177691931 - MER5A DNA MER1_type -7 182 42 1150 166 0 39 chr3 49833033 49833262 -177691316 + AluJo SINE Alu 85 304 -8 24 0 0 0 chr3 49833602 49833626 -177690952 + AT_rich Low_complexity Low_complexity 1 24 0 805 215 159 25 chr3 49833737 49834063 -177690515 + L1ME2 LINE L1 5795 6164 0 2008 87 0 54 chr3 49835631 49835971 -177688607 - AluY SINE Alu 0 326 3 189 0 0 0 chr3 49836042 49836063 -177688515 + (A)n Simple_repeat Simple_repeat 1 21 0 27 0 0 0 chr3 49836564 49836591 -177687987 + AT_rich Low_complexity Low_complexity 1 27 0 2310 206 82 65 chr3 49836674 49837147 -177687431 - L1MC4 LINE L1 -18 7790 7327 2118 129 3 0 chr3 49837147 49837458 -177687120 - AluJo SINE Alu 0 312 1 1981 110 7 13 chr3 49837468 49837767 -177686811 - AluSx SINE Alu -15 297 1 2310 206 82 65 chr3 49837767 49838198 -177686380 - L1MC4 LINE L1 -489 7319 6856 838 190 75 30 chr3 49838776 49838976 -177685602 - MER3 DNA MER1_type 0 209 1 879 203 155 81 chr3 49839147 49839672 -177684906 + MER34C LTR ERV1 1 542 0 574 146 4 15 chr3 49839904 49840162 -177684416 + AluJ SINE Alu 1 305 0 2113 135 0 0 chr3 49840162 49840474 -177684104 + AluSx SINE Alu 1 312 0 1667 183 24 3 chr3 49841219 49841514 -177683064 - AluJb SINE Alu -11 301 1 1165 167 19 19 chr3 49846275 49846490 -177678088 - MER20 DNA MER1_type 0 219 5 255 161 0 0 chr3 49846587 49846643 -177677935 + (TG)n Simple_repeat Simple_repeat 2 57 0 1646 209 0 3 chr3 49847779 49848085 -177676493 + AluJo SINE Alu 1 305 -7 268 135 0 0 chr3 49848132 49848169 -177676409 + MER21B LTR ERV1 330 366 -497 324 128 0 0 chr3 49848170 49848217 -177676361 + MER21A LTR ERV1 527 573 -358 2172 124 3 3 chr3 49849134 49849432 -177675146 - AluSx SINE Alu -14 298 1 21 71 0 0 chr3 49849913 49849955 -177674623 + AT_rich Low_complexity Low_complexity 1 42 0 449 288 106 13 chr3 49850107 49850333 -177674245 + MIR SINE MIR 15 261 -1 242 281 171 7 chr3 49851049 49851195 -177673383 - MIR SINE MIR -12 250 81 390 238 112 65 chr3 49851496 49851791 -177672787 + L1MC4 LINE L1 6618 6884 -924 1586 192 66 46 chr3 49852390 49852473 -177672105 + MLT1C LTR MaLR 7 87 -380 2278 107 16 3 chr3 49852473 49852781 -177671797 - AluSx SINE Alu 0 312 1 1586 192 66 46 chr3 49852781 49853154 -177671424 + MLT1C LTR MaLR 87 467 0 23 33 0 0 chr3 49853469 49853499 -177671079 + AT_rich Low_complexity Low_complexity 1 30 0 2204 86 4 4 chr3 49854008 49854287 -177670291 - AluSc SINE Alu -30 279 1 432 0 0 0 chr3 49855710 49855758 -177668820 + (CA)n Simple_repeat Simple_repeat 2 49 0 782 178 0 15 chr3 49855895 49856030 -177668548 - FLAM_C SINE Alu 0 133 1 23 0 0 0 chr3 49856178 49856201 -177668377 + AT_rich Low_complexity Low_complexity 1 23 0 291 289 7 59 chr3 49856734 49856869 -177667709 - MIR3 SINE MIR -68 140 13 2266 109 13 0 chr3 49857658 49857961 -177666617 + AluSx SINE Alu 3 309 -3 1506 185 21 14 chr3 49857963 49858281 -177666297 - AluJo SINE Alu 0 331 12 772 151 7 14 chr3 49859044 49859183 -177665395 - FLAM_C SINE Alu 0 143 6 236 348 0 0 chr3 49859335 49859427 -177665151 - L2 LINE L2 -38 3234 3143 854 178 24 18 chr3 49859586 49859755 -177664823 + FRAM SINE Alu 1 161 -15 2282 74 28 3 chr3 49859755 49860040 -177664538 + AluY SINE Alu 1 292 -19 1814 147 4 4 chr3 49860056 49860329 -177664249 + AluJb SINE Alu 1 273 -39 228 125 56 28 chr3 49860331 49860403 -177664175 + GA-rich Low_complexity Low_complexity 4 77 0 25 0 0 0 chr3 49860509 49860534 -177664044 + AT_rich Low_complexity Low_complexity 1 25 0 2494 40 40 0 chr3 49860534 49860833 -177663745 - AluY SINE Alu 0 311 1 1973 105 3 36 chr3 49860834 49861140 -177663438 - AluSx SINE Alu -16 296 1 294 295 71 22 chr3 49861589 49861911 -177662667 + L1M4 LINE L1 4482 4819 -1327 1621 175 46 20 chr3 49862147 49862450 -177662128 - AluSx SINE Alu -1 311 1 1793 176 10 0 chr3 49862450 49862746 -177661832 - AluSx SINE Alu -13 299 1 805 141 0 40 chr3 49862903 49863092 -177661486 + FLAM_C SINE Alu 1 183 0 770 189 28 44 chr3 49863092 49863272 -177661306 + AluJo SINE Alu 120 296 -16 356 118 79 0 chr3 49863297 49863424 -177661154 + (TA)n Simple_repeat Simple_repeat 2 138 0 31 44 0 0 chr3 49863424 49863469 -177661109 + AT_rich Low_complexity Low_complexity 1 45 0 910 198 6 0 chr3 49863473 49863630 -177660948 + FAM SINE Alu 1 158 -17 2158 105 28 0 chr3 49863647 49863933 -177660645 + AluSp SINE Alu 1 294 -19 1366 156 87 55 chr3 49863934 49864223 -177660355 + AluJb SINE Alu 1 298 -14 489 193 45 119 chr3 49864226 49864380 -177660198 - L1MC5 LINE L1 -83 7878 7741 2162 128 0 26 chr3 49864380 49864693 -177659885 + AluSx SINE Alu 1 305 -7 489 193 45 119 chr3 49864693 49864740 -177659838 - L1MC5 LINE L1 -220 7741 7692 339 303 30 36 chr3 49864807 49864972 -177659606 - L1M4 LINE L1 -2613 3533 3370 673 287 251 9 chr3 49865026 49865569 -177659009 - L2 LINE L2 -1672 1642 969 260 300 0 0 chr3 49865580 49865650 -177658928 - L2 LINE L2 -2883 431 362 1601 114 4 4 chr3 49865940 49866168 -177658410 - AluJb SINE Alu -4 308 81 434 322 50 4 chr3 49866195 49866551 -177658027 - ERVL LTR ERVL -2030 3734 3333 831 103 48 36 chr3 49866551 49866716 -177657862 + L1MA8 LINE L1 5940 6106 -185 1360 96 5 10 chr3 49866716 49866913 -177657665 - Tigger7 DNA MER2_type -2 2585 2390 1952 323 48 29 chr3 49866915 49867153 -177657425 - ERVL LTR ERVL -2419 3345 3113 2188 131 0 13 chr3 49867153 49867467 -177657111 - AluSx SINE Alu 0 312 3 1952 323 48 29 chr3 49867467 49868166 -177656412 - ERVL LTR ERVL -2651 3113 2390 1855 161 7 7 chr3 49868167 49868471 -177656107 + AluJo SINE Alu 1 304 -8 438 337 47 10 chr3 49868636 49868829 -177655749 - ERVL LTR ERVL -3461 2303 2104 1904 124 0 4 chr3 49868829 49869086 -177655492 - AluSq SINE Alu -57 256 1 814 126 17 0 chr3 49869116 49869235 -177655343 - MSTB LTR MaLR 0 426 306 8646 52 9 101 chr3 49869235 49870550 -177654028 + SVA Other Other 223 1386 0 1453 212 0 37 chr3 49870565 49870862 -177653716 + AluJb SINE Alu 1 286 -26 21 0 0 0 chr3 49870862 49870883 -177653695 + AT_rich Low_complexity Low_complexity 1 21 0 7349 99 12 63 chr3 49870883 49871386 -177653192 + L1M1 LINE L1 2416 2943 -4622 2146 134 0 0 chr3 49871386 49871693 -177652885 + AluSx SINE Alu 1 307 -5 7349 99 12 63 chr3 49871693 49872420 -177652158 + L1M1 LINE L1 2943 3584 -3981 2217 99 3 0 chr3 49872420 49872739 -177651839 + AluSp SINE Alu 1 320 0 7349 99 12 63 chr3 49872739 49872764 -177651814 + L1M1 LINE L1 3584 3609 -3956 1899 109 4 4 chr3 49872765 49873022 -177651556 + AluSx SINE Alu 21 277 -35 506 226 66 0 chr3 49873047 49873153 -177651425 + LTR16A1 LTR ERVL 345 457 0 325 132 19 0 chr3 49873154 49873207 -177651371 + MSTB LTR MaLR 1 54 -374 2177 158 51 16 chr3 49873262 49873635 -177650943 + MSTB LTR MaLR 41 426 0 2187 122 0 10 chr3 49873665 49873976 -177650602 + AluSx SINE Alu 1 308 -4 2364 76 17 7 chr3 49874049 49874351 -177650227 + AluY SINE Alu 1 305 -6 839 158 0 43 chr3 49874441 49874580 -177649998 - FLAM_C SINE Alu 0 133 1 2370 77 7 3 chr3 49875572 49875869 -177648709 - AluSq SINE Alu -15 298 1 299 269 32 0 chr3 49876087 49876180 -177648398 + L2 LINE L2 3218 3313 0 2025 130 44 0 chr3 49876216 49876509 -177648069 - AluSx SINE Alu -6 306 1 21 36 0 0 chr3 49876755 49876783 -177647795 + AT_rich Low_complexity Low_complexity 1 28 0 1825 161 3 3 chr3 49877103 49877401 -177647177 - AluJo SINE Alu -14 298 1 198 208 0 0 chr3 49877980 49878028 -177646550 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 207 177 13 38 chr3 49878068 49878147 -177646431 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 231 108 12 96 chr3 49878149 49878232 -177646346 + L1MC3 LINE L1 6571 6646 -1139 1689 146 0 8 chr3 49878268 49878515 -177646063 + AluSx SINE Alu 1 245 -67 396 213 0 13 chr3 49878515 49878590 -177645988 - L1MC/D LINE L1 -2168 5640 5567 1277 234 59 118 chr3 49878785 49879087 -177645491 + MER34 LTR ERV1 1 256 -286 1775 178 0 0 chr3 49879087 49879362 -177645216 + AluSx SINE Alu 1 275 -37 1277 234 59 118 chr3 49879362 49879618 -177644960 + MER34 LTR ERV1 256 526 -16 338 248 9 9 chr3 49880193 49880298 -177644280 - L1M4 LINE L1 -2968 3178 3074 2162 130 3 0 chr3 49880315 49880623 -177643955 - AluSx SINE Alu -3 309 1 236 275 9 55 chr3 49880672 49880781 -177643797 + L1M4 LINE L1 2514 2617 -3529 237 326 0 31 chr3 49880916 49881014 -177643564 - L1MDb LINE L1 -5521 888 794 305 256 174 8 chr3 49881894 49882015 -177642563 + Charlie8 DNA MER1_type 115 255 -2162 582 182 0 10 chr3 49883348 49883447 -177641131 - Tigger7 DNA MER2_type 0 2487 2390 1579 203 0 4 chr3 49883448 49883714 -177640864 - Tigger7 DNA MER2_type -2222 265 1 225 190 52 17 chr3 49884939 49884997 -177639581 - L2 LINE L2 0 3272 3213 240 172 118 97 chr3 49884998 49885091 -177639487 + Charlie1 DNA MER1_type 648 742 -2019 1528 216 26 3 chr3 49885096 49885439 -177639139 + L2 LINE L2 2303 2653 -661 360 293 103 9 chr3 49885579 49885695 -177638883 + ERVL LTR ERVL 5212 5338 -426 615 234 258 22 chr3 49885695 49886245 -177638333 - LTR50 LTR ERVL -15 684 1 40294 36 1 1 chr3 49886309 49891872 -177632706 - L1PA3 LINE L1 0 6155 595 708 78 0 0 chr3 49891866 49891956 -177632622 - L1PA3 LINE L1 -6048 98 9 * 610 207 113 20 chr3 49892257 49892407 -177632171 + LTR67 LTR ERVL 2 165 -392 528 288 14 47 chr3 49892401 49892616 -177631962 + LTR67 LTR ERVL 350 557 0 * 9258 138 13 10 chr3 49892668 49893383 -177631195 - L1MA3 LINE L1 0 6305 5594 2054 121 0 3 chr3 49893383 49893689 -177630889 - AluSq SINE Alu -8 305 1 9258 138 13 10 chr3 49893689 49895563 -177629015 - L1MA3 LINE L1 -711 5594 3704 463 330 123 60 chr3 49895596 49896798 -177627780 - L2 LINE L2 -1687 1627 350 1997 114 3 10 chr3 49897025 49897315 -177627263 + AluSx SINE Alu 1 288 -24 1325 154 48 4 chr3 49897337 49897564 -177627014 + AluJb SINE Alu 59 295 -17 584 269 23 11 chr3 49897564 49897739 -177626839 + L1MB7 LINE L1 5964 6140 -44 24 53 0 0 chr3 49897982 49898020 -177626558 + AT_rich Low_complexity Low_complexity 1 38 0 2288 84 0 3 chr3 49898242 49898552 -177626026 - AluY SINE Alu -2 309 1 355 324 127 0 chr3 49899512 49899654 -177624924 - MIR SINE MIR -16 246 87 427 289 222 0 chr3 49899806 49899986 -177624592 - MIR SINE MIR -25 237 18 236 217 67 0 chr3 49901514 49901574 -177623004 + MIR SINE MIR 154 217 -45 353 270 131 7 chr3 49901633 49901770 -177622808 + MIR SINE MIR 60 213 -49 626 144 31 0 chr3 49902456 49902553 -177622025 - MER5A DNA MER1_type -18 171 72 2212 90 3 0 chr3 49902563 49902863 -177621715 - AluSx SINE Alu -11 301 1 2241 106 0 3 chr3 49902891 49903203 -177621375 - AluSx SINE Alu 0 312 2 285 312 65 18 chr3 49903259 49903429 -177621149 - L2 LINE L2 -1197 2117 1940 269 299 94 8 chr3 49903710 49903837 -177620741 + MIR3 SINE MIR 39 176 -32 29 0 0 0 chr3 49904645 49904674 -177619904 + AT_rich Low_complexity Low_complexity 1 29 0 305 283 214 0 chr3 49904792 49904937 -177619641 + MIR SINE MIR 11 186 -76 313 216 81 95 chr3 49905492 49905714 -177618864 - Charlie4a DNA MER1_type -3 505 287 1116 241 10 21 chr3 49905806 49906097 -177618481 - Charlie4a DNA MER1_type -203 305 18 2227 88 0 0 chr3 49906427 49906744 -177617834 - AluSp SINE Alu 0 317 1 1641 176 0 26 chr3 49906981 49907293 -177617285 + AluJo SINE Alu 2 305 -7 1914 125 0 17 chr3 49908497 49908793 -177615785 + AluSx SINE Alu 13 303 -9 267 241 0 0 chr3 49909655 49909713 -177614865 + (TCCA)n Simple_repeat Simple_repeat 4 61 0 224 328 16 0 chr3 49909738 49909802 -177614776 - L2 LINE L2 -63 3209 3145 1616 165 18 0 chr3 49910486 49910765 -177613813 - AluJo SINE Alu -13 299 16 2078 122 0 0 chr3 49912525 49912819 -177611759 + AluSx SINE Alu 3 296 -16 2415 63 0 0 chr3 49913082 49913384 -177611194 + AluY SINE Alu 1 302 -9 2151 88 0 19 chr3 49913795 49914102 -177610476 + AluSc SINE Alu 1 301 -8 525 205 0 27 chr3 49914579 49914691 -177609887 - FLAM_C SINE Alu -2 141 33 549 279 55 12 chr3 49914773 49914938 -177609640 + MLT1J LTR MaLR 7 178 -333 232 224 37 84 chr3 49915049 49915156 -177609422 + MLT1J LTR MaLR 379 480 -31 294 355 127 47 chr3 49915182 49915568 -177609010 + L2 LINE L2 2827 3243 -29 2043 102 0 26 chr3 49916250 49916553 -177608025 + AluSx SINE Alu 1 295 -17 1961 98 0 7 chr3 49916555 49916829 -177607749 + AluSc SINE Alu 32 303 -6 300 315 8 54 chr3 49917307 49917437 -177607141 + MIR SINE MIR 24 147 -61 231 154 77 0 chr3 49917588 49917640 -177606938 - Charlie8 DNA MER1_type -2275 142 87 193 297 51 51 chr3 49918316 49918434 -177606144 - MIR3 SINE MIR -31 177 60 344 293 0 0 chr3 49918504 49918586 -177605992 + L2 LINE L2 3226 3307 -6 197 297 93 0 chr3 49918698 49918816 -177605762 - MIR3 SINE MIR -71 137 9 2055 130 0 0 chr3 49919629 49919930 -177604648 + AluSx SINE Alu 1 301 -11 244 302 87 16 chr3 49920053 49920179 -177604399 + L1ME LINE L1 5534 5668 -453 2598 171 62 30 chr3 49920248 49920785 -177603793 + L1MB5 LINE L1 5585 6138 -36 866 139 0 0 chr3 49920788 49920917 -177603661 + FLAM_C SINE Alu 1 129 -4 1821 128 36 4 chr3 49920927 49921201 -177603377 + AluSq SINE Alu 1 283 -30 262 80 9 115 chr3 49921217 49921330 -177603248 + (TAGGG)n Simple_repeat Simple_repeat 2 102 0 532 80 273 0 chr3 49921451 49921539 -177603039 - AluSg/x SINE Alu -125 187 76 853 56 0 0 chr3 49921539 49921647 -177602931 + AluSg/x SINE Alu 199 306 -6 1135 123 25 19 chr3 49921840 49922086 -177602492 + MER4-int LTR ERV1 1402 2504 -4094 2256 81 0 0 chr3 49922088 49922383 -177602195 + AluY SINE Alu 1 295 -16 1125 172 88 9 chr3 49922388 49922603 -177601975 - LTR8 LTR ERV1 -434 257 26 276 298 111 75 chr3 49922607 49922859 -177601719 + L2 LINE L2 2927 3187 -85 342 0 0 0 chr3 49923650 49923688 -177600890 + (TA)n Simple_repeat Simple_repeat 1 38 0 3674 60 2 0 chr3 49923688 49924139 -177600439 - L1PA5 LINE L1 -19 6135 5684 312 204 0 0 chr3 49924368 49924422 -177600156 - MER66A LTR ERV1 -141 337 284 574 268 118 18 chr3 49924532 49924760 -177599818 - MIR SINE MIR 0 262 12 1832 154 3 7 chr3 49925268 49925574 -177599004 - AluJb SINE Alu -7 305 1 893 225 183 39 chr3 49925673 49926033 -177598545 + MLT1J LTR MaLR 100 511 0 2196 99 7 0 chr3 49926247 49926549 -177598029 - AluSc SINE Alu -5 304 1 21 71 0 0 chr3 49927142 49927184 -177597394 + AT_rich Low_complexity Low_complexity 1 42 0 358 164 16 0 chr3 49927255 49927316 -177597262 - AluJo SINE Alu -168 134 73 17618 86 11 25 chr3 49927316 49928530 -177596048 - L1P LINE L1 -3718 2428 1262 2353 73 0 7 chr3 49928530 49928833 -177595745 + AluSp SINE Alu 2 302 -11 17618 86 11 25 chr3 49928833 49930076 -177594502 - L1P LINE L1 -4884 1262 4 545 133 0 0 chr3 49930081 49930156 -177594422 - AluJo SINE Alu -224 88 14 2004 128 0 23 chr3 49930308 49930613 -177593965 + AluSx SINE Alu 1 298 -14 793 184 15 97 chr3 49930626 49930832 -177593746 + L1MB7 LINE L1 5987 6175 -9 239 186 0 34 chr3 49930888 49930947 -177593631 + LTR28 LTR ERV1 1 57 -963 * 1669 160 108 1 chr3 49930918 49931305 -177593273 + MER61D LTR ERV1 25 501 0 2203 101 0 0 chr3 49931497 49931793 -177592785 + AluSx SINE Alu 1 296 -16 945 218 27 9 chr3 49932014 49932234 -177592344 + MER58A DNA MER1_type 1 224 0 250 301 110 29 chr3 49932600 49932773 -177591805 + MLT1I LTR MaLR 197 383 -26 2189 93 3 7 chr3 49932815 49933115 -177591463 + AluSq SINE Alu 1 299 -14 1625 131 3 47 chr3 49933399 49933696 -177590882 - AluJo SINE Alu -19 293 10 379 248 0 91 chr3 49935586 49935784 -177588794 + GA-rich Low_complexity Low_complexity 1 180 0 318 295 53 0 chr3 49936513 49936685 -177587893 + L1MC4a LINE L1 5705 5825 -296 911 239 56 46 chr3 49937042 49937229 -177587349 + MER20B DNA MER1_type 476 669 -114 2097 125 0 3 chr3 49937229 49937541 -177587037 + AluSx SINE Alu 1 311 -1 911 239 56 46 chr3 49937541 49937658 -177586920 + MER20B DNA MER1_type 669 783 0 1866 196 25 0 chr3 49937663 49938016 -177586562 - MLT1A1 LTR MaLR -2 363 2 312 27 0 0 chr3 49938034 49938071 -177586507 + (ATG)n Simple_repeat Simple_repeat 2 38 0 292 297 145 0 chr3 49938476 49938614 -177585964 + MIR SINE MIR 93 250 -12 992 238 38 85 chr3 49938631 49939055 -177585523 + MLT2D LTR ERVL 1 404 -10 1265 226 17 17 chr3 49939112 49939408 -177585170 + AluJo SINE Alu 2 297 -15 1856 137 10 7 chr3 49939778 49940070 -177584508 + AluSx SINE Alu 1 293 -19 326 154 0 0 chr3 49940070 49940135 -177584443 + G-rich Low_complexity Low_complexity 2 66 0 786 115 0 0 chr3 49940897 49941001 -177583577 + AluJb SINE Alu 2 105 -207 693 66 0 0 chr3 49941009 49941100 -177583478 + (CATAA)n Simple_repeat Simple_repeat 2 92 0 228 133 0 67 chr3 49941678 49941723 -177582855 + (GGGA)n Simple_repeat Simple_repeat 4 45 0 2047 113 16 13 chr3 49943068 49943378 -177581200 - AluSx SINE Alu -1 311 1 205 328 145 8 chr3 49943724 49943855 -177580723 + MIR SINE MIR 20 168 -94 2452 287 169 18 chr3 49943865 49945397 -177579181 - L2 LINE L2 0 3313 1546 2009 128 3 34 chr3 49947165 49947486 -177577092 + AluSx SINE Alu 1 311 -1 701 245 196 0 chr3 49947758 49947942 -177576636 + Charlie1 DNA MER1_type 8 227 -2534 338 217 85 85 chr3 49947946 49948075 -177576503 + Charlie1 DNA MER1_type 2633 2761 0 1116 170 74 48 chr3 49948251 49948313 -177576265 - MER46A DNA MER2_type -2495 236 177 2009 128 0 3 chr3 49948313 49948611 -177575967 + AluSx SINE Alu 1 297 -15 1116 170 74 48 chr3 49948611 49948778 -177575800 - MER46A DNA MER2_type -2554 177 1 685 178 51 17 chr3 49949345 49949463 -177575115 - FLAM_A SINE Alu -11 122 1 384 254 30 101 chr3 49949584 49949753 -177574825 + HAL1 LINE L1 1228 1384 -1123 1815 130 18 4 chr3 49949868 49950189 -177574389 - AluJb SINE Alu 0 325 1 338 308 113 71 chr3 49950196 49950436 -177574142 + HAL1b LINE L1 468 717 -631 1828 131 14 3 chr3 49951160 49951465 -177573113 - AluSx SINE Alu 0 308 1 181 256 0 0 chr3 49951522 49951561 -177573017 + MIR3 SINE MIR 125 163 -45 227 247 10 15 chr3 49952232 49952329 -177572249 + L2 LINE L2 3133 3270 -2 1595 175 3 7 chr3 49952606 49952898 -177571680 + AluJb SINE Alu 1 291 -21 300 330 43 26 chr3 49953675 49953790 -177570788 + MIR3 SINE MIR 81 197 -11 2047 117 7 7 chr3 49954001 49954310 -177570268 + AluSx SINE Alu 1 309 -3 1451 204 72 108 chr3 49954568 49955001 -177569577 - MLT1E2 LTR MaLR 0 626 243 2403 78 0 0 chr3 49955001 49955310 -177569268 - AluY SINE Alu -2 309 1 1451 204 72 108 chr3 49955310 49955545 -177569033 - MLT1E2 LTR MaLR -383 243 1 5199 168 8 46 chr3 49955881 49956196 -177568382 + L1P4 LINE L1 4201 4527 -1638 1984 146 3 0 chr3 49956196 49956497 -177568081 + AluSx SINE Alu 3 304 -8 5199 168 8 46 chr3 49956497 49957256 -177567322 + L1P4 LINE L1 4527 5314 -851 2255 97 0 0 chr3 49957256 49957565 -177567013 + AluSq SINE Alu 1 309 -4 5199 168 8 46 chr3 49957565 49957655 -177566923 + L1P4 LINE L1 5314 5406 -759 2021 112 0 3 chr3 49957655 49957940 -177566638 + AluSx SINE Alu 18 301 -11 5199 168 8 46 chr3 49957940 49958361 -177566217 + L1P4 LINE L1 5406 5722 -443 345 26 0 0 chr3 49958361 49958400 -177566178 + AluJ/FLAM SINE Alu 62 100 -202 2404 80 0 0 chr3 49958823 49959123 -177565455 + AluSx SINE Alu 1 300 -12 202 182 9 55 chr3 49959579 49959689 -177564889 + GA-rich Low_complexity Low_complexity 1 105 0 397 303 133 24 chr3 49960136 49960347 -177564231 + L1M4 LINE L1 3283 3516 -2630 222 287 219 46 chr3 49961427 49961594 -177562984 + L2 LINE L2 2153 2290 -1024 2296 90 0 3 chr3 49961594 49961904 -177562674 + AluSx SINE Alu 1 309 -3 222 287 219 46 chr3 49961904 49962151 -177562427 + L2 LINE L2 2290 2639 -675 2346 80 0 0 chr3 49962461 49962772 -177561806 - AluY SINE Alu 0 311 1 1871 169 0 0 chr3 49962901 49963209 -177561369 - AluJb SINE Alu -4 308 1 188 219 0 0 chr3 49963733 49963774 -177560804 - MIR SINE MIR -59 203 163 1885 118 14 7 chr3 49963774 49964061 -177560517 + AluSx SINE Alu 1 289 -23 1530 217 98 0 chr3 49964941 49965338 -177559240 + L1ME3 LINE L1 5568 6003 -159 1240 173 90 47 chr3 49966081 49966359 -177558219 + AluJo SINE Alu 1 290 -22 2025 114 34 0 chr3 49966510 49966807 -177557771 - AluSc SINE Alu -2 307 1 1483 142 0 63 chr3 49967367 49967635 -177556943 - AluJo SINE Alu -16 296 46 308 167 37 0 chr3 49967728 49967782 -177556796 + MER66B LTR ERV1 292 347 -139 25 51 0 0 chr3 49967784 49967823 -177556755 + AT_rich Low_complexity Low_complexity 1 39 0 1907 116 0 4 chr3 49968363 49968663 -177555915 - AluSx SINE Alu 0 307 9 1988 144 0 0 chr3 49969144 49969450 -177555128 + AluSx SINE Alu 1 306 -6 2045 131 0 0 chr3 49969588 49969894 -177554684 - AluSx SINE Alu -6 306 1 180 281 47 0 chr3 49969896 49969960 -177554618 - MIR SINE MIR -50 212 146 251 248 190 7 chr3 49970034 49970189 -177554389 - MIR SINE MIR -50 212 30 26 0 0 0 chr3 49971612 49971638 -177552940 + GC_rich Low_complexity Low_complexity 1 26 0 562 209 66 38 chr3 49972524 49972539 -177552039 + MER5C DNA MER1_type 105 118 -206 2074 107 7 7 chr3 49972539 49972837 -177551741 - AluSq SINE Alu -15 298 1 562 209 66 38 chr3 49972837 49973032 -177551546 + MER5C DNA MER1_type 118 321 -3 799 168 23 0 chr3 49975531 49975662 -177548916 + AluSq/x SINE Alu 2 135 -177 286 241 0 11 chr3 49975664 49975751 -177548827 + (TA)n Simple_repeat Simple_repeat 1 86 0 544 214 268 0 chr3 49976618 49976786 -177547792 - MER20B DNA MER1_type 0 219 7 698 243 14 91 chr3 49976933 49977143 -177547435 + MIR SINE MIR 18 211 -51 417 100 0 29 chr3 49977196 49977266 -177547312 + L1PA6 LINE L1 6083 6150 -4 906 302 123 31 chr3 49977360 49978139 -177546439 + L2 LINE L2 2454 3313 0 2252 219 73 32 chr3 49978535 49979100 -177545478 - MLT1E2 LTR MaLR 0 626 39 35 41 0 0 chr3 49979169 49979218 -177545360 + AT_rich Low_complexity Low_complexity 1 49 0 351 303 10 0 chr3 49979765 49979864 -177544714 + MIR3 SINE MIR 88 187 -21 910 225 128 79 chr3 49980223 49980730 -177543848 + MLT1H LTR MaLR 18 549 0 457 297 73 65 chr3 49981590 49981836 -177542742 - MIR SINE MIR -8 254 7 378 260 49 98 chr3 49981992 49982166 -177542412 - L1MEd LINE L1 -5014 1105 957 1940 129 13 16 chr3 49982166 49982497 -177542081 - AluJb SINE Alu 0 312 1 378 260 49 98 chr3 49982497 49982691 -177541887 - L1MEd LINE L1 -5162 957 755 367 321 131 0 chr3 49983129 49983297 -177541281 - MIR SINE MIR 0 262 73 425 200 0 13 chr3 49983547 49983702 -177540876 + GA-rich Low_complexity Low_complexity 1 152 0 378 250 205 20 chr3 49983805 49983849 -177540729 - MLT1K LTR MaLR -23 565 530 567 0 0 0 chr3 49983849 49983912 -177540666 + (CA)n Simple_repeat Simple_repeat 2 64 0 378 250 205 20 chr3 49983912 49984067 -177540511 - MLT1K LTR MaLR -58 530 329 1043 232 82 44 chr3 49985065 49985432 -177539146 + MLT1K LTR MaLR 190 570 -18 769 328 75 20 chr3 49985472 49986017 -177538561 + L1MC4 LINE L1 7299 7873 -169 867 261 74 5 chr3 49986198 49986413 -177538165 + MIR SINE MIR 20 249 -13 310 209 9 29 chr3 49986449 49986554 -177538024 + GA-rich Low_complexity Low_complexity 4 106 0 473 317 138 39 chr3 49987828 49988213 -177536365 + MLT1L LTR MaLR 190 612 -3 376 179 115 0 chr3 49988753 49988831 -177535747 + MER81 DNA DNA 1 87 -27 246 283 283 9 chr3 49989354 49989460 -177535118 - MIR SINE MIR -56 206 72 353 296 49 28 chr3 49989512 49989654 -177534924 + MIR SINE MIR 31 175 -87 496 234 182 26 chr3 49989809 49989963 -177534615 + MER5B DNA MER1_type 1 178 0 521 231 187 0 chr3 49989986 49990120 -177534458 + MER5A DNA MER1_type 31 189 0 404 280 20 0 chr3 49990708 49990808 -177533770 - MER5A DNA MER1_type 0 189 88 308 221 0 26 chr3 49990808 49990885 -177533693 - MLT1K LTR MaLR -373 215 141 701 265 101 59 chr3 49991458 49991813 -177532765 + MLT1K LTR MaLR 131 500 -88 1750 84 0 13 chr3 49991831 49992068 -177532510 + AluSg SINE Alu 64 297 -13 455 167 13 0 chr3 49992068 49992146 -177532432 - MER89 LTR ERV1 -180 379 301 367 150 0 0 chr3 49992198 49992258 -177532320 - MER89 LTR ERV1 -499 60 1 222 167 83 0 chr3 49992293 49992341 -177532237 - L2 LINE L2 -1 3312 3261 26 0 0 0 chr3 49992730 49992756 -177531822 + AT_rich Low_complexity Low_complexity 1 26 0 246 262 187 28 chr3 49993369 49993476 -177531102 + MIR SINE MIR 21 144 -118 1504 137 0 21 chr3 49993478 49993711 -177530867 + AluSg/x SINE Alu 85 312 0 1870 220 57 61 chr3 49993833 49994509 -177530069 + L1MC5 LINE L1 6991 7666 -295 2127 112 0 0 chr3 49994509 49994830 -177529748 + AluSx SINE Alu 5 325 0 1870 220 57 61 chr3 49994830 49994953 -177529625 + L1MC5 LINE L1 7666 7788 -173 2306 51 4 0 chr3 49995115 49995389 -177529189 + AluY SINE Alu 19 293 -18 3451 159 26 40 chr3 49995448 49995732 -177528846 - L1MB3 LINE L1 -19 6164 5878 2391 80 0 3 chr3 49995732 49996034 -177528544 + AluSx SINE Alu 1 301 -11 3451 159 26 40 chr3 49996034 49996479 -177528099 - L1MB3 LINE L1 -305 5878 5445 235 191 0 0 chr3 49996479 49996526 -177528052 - L1MB3 LINE L1 -1374 4772 4726 316 65 22 0 chr3 49996538 49996584 -177527994 + MER30B DNA MER1_type 4 50 -140 1018 225 115 48 chr3 49996805 49996913 -177527665 + L1M4 LINE L1 4762 4861 -1285 2751 0 0 0 chr3 49996913 49997208 -177527370 + AluYa5 SINE Alu 1 295 -16 1018 225 115 48 chr3 49997208 49997689 -177526889 + L1M4 LINE L1 4861 5391 -755 291 114 0 0 chr3 49998420 49998464 -177526114 + (CCCCCG)n Simple_repeat Simple_repeat 4 47 0 686 207 270 34 chr3 49999478 49999627 -177524951 - L2 LINE L2 -235 3078 2965 1504 168 104 3 chr3 49999627 49999943 -177524635 + MER7A DNA MER2_type 1 346 0 686 207 270 34 chr3 49999943 50000084 -177524494 - L2 LINE L2 -348 2965 2715 24 0 0 0 chr3 50000138 50000162 -177524416 + AT_rich Low_complexity Low_complexity 1 24 0 1876 152 0 32 chr3 50000255 50000565 -177524013 + AluSx SINE Alu 13 312 0 1795 149 46 26 chr3 50000593 50000895 -177523683 + AluJo SINE Alu 1 308 -4 2289 95 3 7 chr3 50001242 50001546 -177523032 - AluSx SINE Alu -9 303 1 595 225 124 9 chr3 50001561 50001899 -177522679 - L1MB3 LINE L1 -2739 3407 3031 241 154 0 0 chr3 50001913 50001952 -177522626 - L1MB3 LINE L1 -3325 2821 2783 1316 206 75 75 chr3 50001961 50002178 -177522400 - L1MB3 LINE L1 -3438 2708 2492 1944 140 0 28 chr3 50002178 50002499 -177522079 - AluSx SINE Alu 0 312 1 1316 206 75 75 chr3 50002499 50002869 -177521709 - L1MB3 LINE L1 -3653 2493 2121 21 82 0 0 chr3 50004174 50004223 -177520355 + AT_rich Low_complexity Low_complexity 1 49 0 821 130 8 30 chr3 50004233 50004364 -177520214 + FLAM_C SINE Alu 1 128 -5 752 191 0 26 chr3 50004364 50004505 -177520073 - FAM SINE Alu -145 40 1 240 291 142 15 chr3 50004600 50004734 -177519844 - MLT1J LTR MaLR -45 466 316 404 247 40 3 chr3 50004746 50004882 -177519696 + L1MC4 LINE L1 7027 7247 -668 309 281 0 0 chr3 50005138 50005234 -177519344 + L1MC4a LINE L1 5731 5826 -348 1978 205 56 89 chr3 50005302 50005489 -177519089 - MER21B LTR ERV1 -81 782 590 1910 104 94 3 chr3 50005489 50005776 -177518802 - AluSq SINE Alu 0 313 1 1978 205 56 89 chr3 50005776 50006272 -177518306 - MER21B LTR ERV1 -273 590 122 2005 125 7 16 chr3 50006350 50006655 -177517923 + AluSx SINE Alu 1 302 -10 314 246 29 0 chr3 50006686 50006755 -177517823 - MER21B LTR ERV1 -775 88 18 373 259 135 42 chr3 50006802 50006995 -177517583 + L1MC4 LINE L1 7735 7945 -97 283 288 43 25 chr3 50007057 50007220 -177517358 - L1 LINE L1 -1488 4658 4493 2267 70 7 13 chr3 50007513 50007812 -177516766 - AluSp SINE Alu -16 297 1 33 25 0 0 chr3 50007998 50008038 -177516540 + AT_rich Low_complexity Low_complexity 1 40 0 2230 103 20 3 chr3 50008964 50009256 -177515322 + AluSg SINE Alu 1 297 -13 1278 169 0 10 chr3 50009413 50009620 -177514958 + AluJb SINE Alu 89 293 -19 299 233 108 8 chr3 50009671 50009800 -177514778 + L1MC4a LINE L1 5882 6023 -1785 350 276 135 6 chr3 50010017 50010173 -177514405 - HAL1b LINE L1 -574 774 599 559 302 60 6 chr3 50010312 50010494 -177514084 - MIR SINE MIR -51 211 20 563 200 40 32 chr3 50010773 50010898 -177513680 + FLAM_A SINE Alu 2 127 -6 2443 61 0 0 chr3 50010900 50011193 -177513385 + AluY SINE Alu 1 293 -18 377 129 0 0 chr3 50011252 50011314 -177513264 - L1MB3 LINE L1 -19 6164 6103 5155 52 2 0 chr3 50011428 50012522 -177512056 + L1PA6 LINE L1 4827 5921 -233 1616 170 128 0 chr3 50013789 50014118 -177510460 - MSTB LTR MaLR -55 371 1 1037 124 31 109 chr3 50014999 50015204 -177509374 - MLT1B LTR MaLR -75 315 132 808 87 72 29 chr3 50015204 50015342 -177509236 - L1PA8 LINE L1 -2 6170 6027 1037 124 31 109 chr3 50015342 50015393 -177509185 - MLT1B LTR MaLR -258 132 79 2048 123 3 3 chr3 50015393 50015710 -177508868 + AluJb SINE Alu 1 317 0 673 211 103 27 chr3 50015720 50015905 -177508673 - LTR32 LTR ERVL -238 233 35 539 298 49 55 chr3 50017461 50017787 -177506791 + HAL1b LINE L1 196 519 -829 290 258 98 8 chr3 50018174 50018306 -177506272 - L1MC4a LINE L1 -1785 6023 5880 531 219 41 27 chr3 50018355 50018501 -177506077 - AluJb SINE Alu -20 292 145 23 0 0 0 chr3 50020793 50020816 -177503762 + AT_rich Low_complexity Low_complexity 1 23 0 188 159 23 0 chr3 50020820 50020864 -177503714 + L3 LINE CR1 804 848 -729 446 150 10 20 chr3 50021393 50021493 -177503085 - L1MA4A LINE L1 -9 6294 6196 449 136 80 0 chr3 50021524 50021612 -177502966 + L1MA4 LINE L1 6089 6183 -117 4227 93 0 18 chr3 50021900 50022556 -177502022 + L1P LINE L1 4513 5156 -990 353 251 68 32 chr3 50022678 50022897 -177501681 + L1ME LINE L1 4909 5135 -1011 1865 191 61 46 chr3 50022905 50023381 -177501197 - MLT1D LTR MaLR 0 505 23 568 195 98 8 chr3 50023494 50023617 -177500961 + AluJo SINE Alu 1 134 -178 296 285 48 20 chr3 50023655 50023885 -177500693 + L1ME LINE L1 5308 5546 -634 1869 119 59 11 chr3 50024431 50024717 -177499861 + AluSx SINE Alu 1 300 -12 619 199 48 0 chr3 50027417 50027563 -177497015 + MER58B DNA MER1_type 183 335 -6 281 270 73 95 chr3 50029472 50029609 -177494969 - MER5A DNA MER1_type -55 134 1 8496 35 2 0 chr3 50030808 50031909 -177492669 + L1P LINE L1 2909 4011 -2135 499 257 110 37 chr3 50032023 50032323 -177492255 - L1ME4a LINE L1 -216 5905 5584 377 284 131 37 chr3 50032488 50032931 -177491647 + L1ME LINE L1 5347 5818 -303 219 370 0 72 chr3 50033701 50033839 -177490739 + L2 LINE L2 3137 3264 -8 7967 114 43 26 chr3 50034678 50035888 -177488690 + Tigger1 DNA MER2_type 340 1527 -891 2064 78 0 51 chr3 50035888 50036181 -177488397 + AluSc SINE Alu 1 278 -31 269 26 26 0 chr3 50036186 50036224 -177488354 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 7967 114 43 26 chr3 50036224 50036372 -177488206 + Tigger1 DNA MER2_type 1530 1728 -690 234 295 139 31 chr3 50036473 50036602 -177487976 - L2 LINE L2 -339 2975 2833 183 375 21 10 chr3 50037988 50038084 -177486494 - MIR3 SINE MIR -4 204 108 261 282 57 48 chr3 50038373 50038497 -177486081 - L2 LINE L2 -9 3304 3180 365 259 173 7 chr3 50038650 50038928 -177485650 - HAL1 LINE L1 -165 2342 2019 819 290 80 9 chr3 50039102 50039550 -177485028 - HAL1 LINE L1 -711 1796 1317 526 245 183 27 chr3 50039697 50040068 -177484510 - LTR48B LTR ERV1 -40 604 176 3739 67 5 63 chr3 50040168 50040738 -177483840 + HERVL-A1 LTR ERVL 458 994 -4660 * 4775 81 29 3 chr3 50040735 50041005 -177483573 + HERVL-A1 LTR ERVL 4948 5209 -445 207 0 0 0 chr3 50041005 50041028 -177483550 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4775 81 29 3 chr3 50041028 50041446 -177483132 + HERVL-A1 LTR ERVL 5209 5654 0 3294 76 9 14 chr3 50041446 50041892 -177482686 + MLT2A1 LTR ERVL 1 444 0 270 308 27 34 chr3 50043074 50043220 -177481358 + L1ME LINE L1 4699 4843 -1303 420 267 87 24 chr3 50043604 50043810 -177480768 + L1ME LINE L1 5384 5602 -519 327 289 24 0 chr3 50045080 50045163 -177479415 - L2 LINE L2 -1 3312 3228 393 352 38 34 chr3 50045822 50046058 -177478520 + L1 LINE L1 4280 4516 -1630 227 189 38 19 chr3 50046073 50046126 -177478452 + CT-rich Low_complexity Low_complexity 1 54 0 6958 176 19 3 chr3 50046227 50048031 -177476547 - L1P4 LINE L1 -426 5739 3912 379 100 83 0 chr3 50048360 50048420 -177476158 + L1PA16 LINE L1 6085 6149 -17 1646 185 0 19 chr3 50049160 50049468 -177475110 - AluJb SINE Alu -10 302 1 623 193 60 60 chr3 50049581 50049747 -177474831 + FRAM SINE Alu 1 166 0 21 0 0 0 chr3 50050161 50050182 -177474396 + AT_rich Low_complexity Low_complexity 1 21 0 1475 134 20 72 chr3 50051032 50051324 -177473254 + AluJo SINE Alu 1 277 -35 512 174 165 0 chr3 50051446 50051567 -177473011 - Charlie1 DNA MER1_type -1 2760 2620 * 863 223 30 20 chr3 50051548 50051745 -177472833 - Charlie1 DNA MER1_type -2519 242 44 21 0 0 0 chr3 50052686 50052707 -177471871 + AT_rich Low_complexity Low_complexity 1 21 0 2190 114 0 3 chr3 50052710 50053018 -177471560 + AluSx SINE Alu 1 307 -5 413 129 0 0 chr3 50054004 50054066 -177470512 + AluJ/FLAM SINE Alu 23 84 -228 282 319 24 0 chr3 50055085 50055251 -177469327 + (TG)n Simple_repeat Simple_repeat 1 170 0 535 245 227 0 chr3 50055927 50056090 -177468488 + MIR SINE MIR 63 262 0 180 77 0 0 chr3 50056469 50056495 -177468083 + (GGCTG)n Simple_repeat Simple_repeat 3 28 0 2097 87 0 7 chr3 50056854 50057131 -177467447 + AluSx SINE Alu 1 275 -37 1656 204 99 14 chr3 50057193 50057619 -177466959 - MER20B DNA MER1_type -44 739 278 2104 121 0 3 chr3 50057619 50057932 -177466646 + AluSx SINE Alu 1 312 0 246 324 7 49 chr3 50057944 50058086 -177466492 - L2 LINE L2 -1421 1893 1758 469 350 85 45 chr3 50058087 50058792 -177465786 - L2 LINE L2 -1833 1481 749 1873 112 32 7 chr3 50058988 50059293 -177465285 - AluSq SINE Alu 0 312 1 28 29 0 0 chr3 50059599 50059634 -177464944 + AT_rich Low_complexity Low_complexity 1 35 0 413 272 49 47 chr3 50061690 50061952 -177462626 + L1ME2 LINE L1 5678 5936 -234 2328 75 10 0 chr3 50062092 50062386 -177462192 - AluSg SINE Alu -13 297 1 310 270 204 13 chr3 50062715 50062867 -177461711 - L2 LINE L2 -2 3270 3090 313 312 96 16 chr3 50062874 50062999 -177461579 + MIR SINE MIR 58 192 -70 392 267 67 0 chr3 50063791 50063911 -177460667 + MIR3 SINE MIR 73 200 -8 * 511 300 114 45 chr3 50063898 50064188 -177460390 - L3 LINE CR1 -64 1513 1204 2214 60 42 3 chr3 50068063 50068348 -177456230 - AluY SINE Alu -15 296 1 23 54 0 0 chr3 50068907 50068944 -177455634 + AT_rich Low_complexity Low_complexity 1 37 0 267 146 0 0 chr3 50070633 50070688 -177453890 + (CA)n Simple_repeat Simple_repeat 2 56 0 501 188 0 0 chr3 50070735 50070884 -177453694 + (CA)n Simple_repeat Simple_repeat 2 150 0 291 136 0 0 chr3 50070899 50070958 -177453620 + (CA)n Simple_repeat Simple_repeat 2 60 0 39 22 0 0 chr3 50071657 50071703 -177452875 + AT_rich Low_complexity Low_complexity 1 46 0 716 283 222 57 chr3 50074130 50075891 -177448687 - L2 LINE L2 -549 2765 714 2081 248 115 19 chr3 50075908 50077009 -177447569 - L2 LINE L2 -4 3309 2093 211 162 0 88 chr3 50080239 50080307 -177444271 + CT-rich Low_complexity Low_complexity 4 65 0 460 257 99 0 chr3 50081040 50081207 -177443371 + MER5A DNA MER1_type 4 189 0 247 158 123 0 chr3 50081605 50081662 -177442916 + L2 LINE L2 3210 3273 -40 365 301 98 17 chr3 50083286 50083459 -177441119 - MIR SINE MIR -14 248 62 275 75 25 0 chr3 50083755 50083795 -177440783 + MIR SINE MIR 108 148 -60 655 211 0 0 chr3 50085915 50086038 -177438540 - FLAM_A SINE Alu -8 125 3 278 302 60 43 chr3 50086127 50086243 -177438335 + MIR3 SINE MIR 69 186 -22 205 86 0 29 chr3 50086603 50086638 -177437940 + (CACCC)n Simple_repeat Simple_repeat 1 34 0 351 0 0 0 chr3 50086643 50086682 -177437896 + (CA)n Simple_repeat Simple_repeat 2 40 0 2120 74 0 61 chr3 50086929 50087240 -177437338 - AluSq SINE Alu -21 292 1 263 218 73 73 chr3 50087438 50087562 -177437016 - MIR SINE MIR -131 131 8 996 244 114 51 chr3 50087770 50088265 -177436313 - L2 LINE L2 -46 3267 2745 1923 160 0 0 chr3 50088267 50088574 -177436004 - AluJo SINE Alu -5 307 1 489 178 7 105 chr3 50088580 50088732 -177435846 - L1MC5 LINE L1 -32 7929 7793 229 164 55 0 chr3 50088746 50088801 -177435777 - L2 LINE L2 -814 2500 2443 284 213 40 0 chr3 50088844 50088919 -177435659 - MIR SINE MIR -66 196 119 1289 202 20 49 chr3 50088961 50089318 -177435260 - L1ME1 LINE L1 -5 6161 5825 1504 103 5 14 chr3 50089377 50089590 -177434988 + AluSx SINE Alu 1 211 -101 620 289 146 49 chr3 50089603 50090029 -177434549 + LTR67 LTR ERVL 5 471 -86 285 335 57 6 chr3 50090096 50090254 -177434324 + ERVL LTR ERVL 1106 1271 -4383 562 302 24 28 chr3 50090416 50090628 -177433950 + ERVL LTR ERVL 1496 1706 -4058 534 264 45 19 chr3 50090619 50090774 -177433804 + ERVL LTR ERVL 4401 4559 -1205 * 657 261 79 69 chr3 50090776 50091079 -177433499 + HAL1 LINE L1 3 308 -2199 675 241 201 8 chr3 50091182 50091431 -177433147 + HAL1 LINE L1 517 813 -1694 2452 88 51 20 chr3 50091435 50091788 -177432790 + THE1B LTR MaLR 1 364 0 3485 188 42 71 chr3 50091814 50092921 -177431657 + L1MD2 LINE L1 3 1141 -5265 294 29 0 0 chr3 50092921 50092956 -177431622 + (TG)n Simple_repeat Simple_repeat 2 36 0 3485 188 42 71 chr3 50092956 50093346 -177431232 + L1MD2 LINE L1 1141 1684 -4722 1582 136 4 51 chr3 50093346 50093619 -177430959 + AluSx SINE Alu 38 297 -15 3485 188 42 71 chr3 50093619 50093726 -177430852 + L1MD2 LINE L1 1684 1793 -4613 2669 228 64 9 chr3 50093726 50094475 -177430103 + L1MD2 LINE L1 4497 5286 -1120 552 210 14 29 chr3 50094455 50094484 -177430094 + L1MB3 LINE L1 4665 4693 -1453 * 1872 157 6 13 chr3 50094484 50094797 -177429781 + 7SLRNA srpRNA srpRNA 1 311 -9 552 210 14 29 chr3 50094797 50094905 -177429673 + L1MB3 LINE L1 4693 4800 -1346 758 142 8 0 chr3 50094906 50095026 -177429552 + MLT2B2 LTR ERVL 2 122 -393 3583 135 44 13 chr3 50095025 50095105 -177429473 + L1MB3 LINE L1 5528 5604 -579 2399 90 7 0 chr3 50095105 50095406 -177429172 + AluY SINE Alu 1 303 -8 3583 135 44 13 chr3 50095406 50095960 -177428618 + L1MB3 LINE L1 5604 6182 -1 4252 191 49 27 chr3 50096035 50097135 -177427443 + L1MD2 LINE L1 5272 6422 -197 306 73 0 0 chr3 50097135 50097176 -177427402 + (CA)n Simple_repeat Simple_repeat 2 42 0 4252 191 49 27 chr3 50097176 50097270 -177427308 + L1MD2 LINE L1 6422 6512 -107 730 138 87 92 chr3 50097270 50097488 -177427090 + MLT1A1 LTR MaLR 1 279 -117 5477 155 48 50 chr3 50097488 50098586 -177425992 - MLT1A1-int LTR MaLR -639 1096 1 1490 156 30 111 chr3 50098586 50098983 -177425595 - MLT1A1 LTR MaLR 0 365 1 2840 171 12 16 chr3 50099058 50099572 -177425006 - MLT2B2 LTR ERVL -3 512 1 755 298 89 41 chr3 50099903 50100043 -177424535 + LTR67 LTR ERVL 1 133 -424 2441 144 86 11 chr3 50100043 50100495 -177424083 + MER66B LTR ERV1 1 486 0 755 298 89 41 chr3 50100495 50100793 -177423785 + LTR67 LTR ERVL 133 460 -97 303 250 207 14 chr3 50100915 50101055 -177423523 + MIR SINE MIR 21 187 -75 2103 122 3 30 chr3 50101460 50101763 -177422815 - AluSx SINE Alu -16 296 2 647 277 93 48 chr3 50101764 50102140 -177422438 + MLT1I LTR MaLR 17 409 0 192 259 37 0 chr3 50103037 50103091 -177421487 + L2 LINE L2 3167 3222 -50 301 263 25 17 chr3 50106414 50106532 -177418046 + G-rich Low_complexity Low_complexity 4 122 0 224 333 61 0 chr3 50108306 50108405 -177416173 + MIR SINE MIR 102 206 -56 746 294 10 0 chr3 50108960 50109154 -177415424 - MER91A DNA MER1_type 0 196 1 210 231 19 0 chr3 50109533 50109585 -177414993 + MIR SINE MIR 91 143 -65 182 239 60 30 chr3 50109670 50109737 -177414841 + L2 LINE L2 2982 3050 -222 246 159 0 23 chr3 50110685 50110729 -177413849 - MER91A DNA MER1_type -153 43 1 210 71 0 0 chr3 50111546 50111574 -177413004 + (TCC)n Simple_repeat Simple_repeat 2 29 0 575 169 0 34 chr3 50111605 50111782 -177412796 + CT-rich Low_complexity Low_complexity 1 171 0 435 264 0 0 chr3 50113011 50113121 -177411457 + MER81 DNA DNA 5 114 0 182 220 40 20 chr3 50114524 50114574 -177410004 - MIR3 SINE MIR -45 163 113 208 238 48 0 chr3 50115790 50115853 -177408725 - MIR SINE MIR -79 129 64 27 81 0 0 chr3 50116351 50116413 -177408165 + GC_rich Low_complexity Low_complexity 1 62 0 32 0 0 0 chr3 50116475 50116507 -177408071 + GC_rich Low_complexity Low_complexity 1 32 0 185 62 0 31 chr3 50116640 50116672 -177407906 + (CCCCAG)n Simple_repeat Simple_repeat 3 33 0 191 343 112 21 chr3 50118610 50118753 -177405825 - L2 LINE L2 -251 3021 2866 427 281 79 34 chr3 50119761 50119939 -177404639 - MIR SINE MIR -72 190 5 1412 209 29 7 chr3 50120315 50120592 -177403986 - AluJo SINE Alu -18 294 12 1065 98 0 0 chr3 50121268 50121401 -177403177 - AluSq/x SINE Alu -180 133 1 1355 163 221 39 chr3 50122756 50123167 -177401411 + MLT1E3 LTR MaLR 139 624 0 1069 251 16 8 chr3 50123367 50123618 -177400960 - MLT1F LTR MaLR -261 281 29 727 245 47 24 chr3 50123638 50123850 -177400728 - MLT1J LTR MaLR -243 268 52 440 264 0 9 chr3 50123850 50123956 -177400622 - LTR16C LTR ERVL 0 491 387 284 139 167 14 chr3 50124913 50124985 -177399593 - Charlie4a DNA MER1_type 0 508 426 543 126 19 0 chr3 50124990 50125093 -177399485 - L1PB2 LINE L1 0 6151 6047 14696 194 20 12 chr3 50125093 50127836 -177396742 - L1P5 LINE L1 -467 6400 3681 2249 131 0 0 chr3 50127836 50128134 -177396444 - AluSx SINE Alu -14 298 1 14696 194 20 12 chr3 50128134 50131466 -177393112 - L1P5 LINE L1 -3186 3681 18 1672 213 38 5 chr3 50131466 50131884 -177392694 - Charlie4a DNA MER1_type -53 455 24 975 257 51 20 chr3 50133066 50133406 -177391172 - LTR16C LTR ERVL -8 483 72 914 191 59 20 chr3 50135032 50135236 -177389342 + MIR SINE MIR 51 262 0 1522 185 31 109 chr3 50135330 50135751 -177388827 - MLT1E LTR MaLR 0 593 206 250 308 18 3 chr3 50136442 50136570 -177388008 - MIR SINE MIR -63 145 23 189 195 0 146 chr3 50138037 50138119 -177386459 + MIR SINE MIR 82 151 -57 1494 191 65 18 chr3 50138599 50138876 -177385702 + AluJo SINE Alu 1 290 -22 1204 189 59 21 chr3 50138985 50139223 -177385355 + AluJb SINE Alu 1 247 -65 419 174 0 12 chr3 50139223 50139309 -177385269 - L1MC4a LINE L1 -501 7307 7223 228 224 0 0 chr3 50139325 50139374 -177385204 - Alu SINE Alu -2 300 252 2238 90 0 4 chr3 50139422 50139700 -177384878 + AluSc SINE Alu 18 294 -15 470 293 61 0 chr3 50139705 50139903 -177384675 - L1M4 LINE L1 -1822 4324 4115 1032 156 0 0 chr3 50139904 50140084 -177384494 + (TA)n Simple_repeat Simple_repeat 1 180 0 539 102 68 0 chr3 50140084 50140172 -177384406 - AluSg/x SINE Alu -1 311 218 309 123 228 0 chr3 50140172 50140229 -177384349 + AluJ/FLAM SINE Alu 31 100 -202 1623 252 4 29 chr3 50140308 50140515 -177384063 - L1M4 LINE L1 -2275 3871 3660 2060 139 3 40 chr3 50140515 50140839 -177383739 - AluSx SINE Alu 0 312 1 1623 252 4 29 chr3 50140839 50141146 -177383432 - L1M4 LINE L1 -2486 3660 3370 1072 231 28 8 chr3 50141522 50141882 -177382696 - L1M4 LINE L1 -2848 3298 2932 462 179 0 0 chr3 50141894 50141989 -177382589 + (TG)n Simple_repeat Simple_repeat 2 96 0 1247 170 63 0 chr3 50141990 50142196 -177382382 - AluJb SINE Alu -16 296 78 1225 82 23 0 chr3 50142196 50142367 -177382211 - MER30 DNA MER1_type -55 175 1 1839 231 51 7 chr3 50142368 50142919 -177381659 - L1M4 LINE L1 -3417 2729 2155 2062 125 133 18 chr3 50142957 50143341 -177381237 - MSTA LTR MaLR 0 428 1 3548 201 6 25 chr3 50143367 50143858 -177380720 - L1PB4 LINE L1 0 6156 5684 1850 151 31 20 chr3 50143858 50144150 -177380428 - AluJo SINE Alu -11 301 7 3548 201 6 25 chr3 50144150 50144441 -177380137 - L1PB4 LINE L1 -472 5684 5389 1993 157 0 3 chr3 50145018 50145323 -177379255 - AluJb SINE Alu -8 304 1 22 70 0 0 chr3 50147059 50147102 -177377476 + AT_rich Low_complexity Low_complexity 1 43 0 1118 145 0 11 chr3 50147107 50147286 -177377292 + AluJb SINE Alu 121 297 -15 3734 134 54 5 chr3 50147288 50147902 -177376676 - L1MB2 LINE L1 -21 6150 5507 180 77 0 0 chr3 50148334 50148360 -177376218 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1038 138 0 0 chr3 50148362 50148521 -177376057 - AluSg/x SINE Alu -30 282 124 200 363 66 0 chr3 50148698 50148789 -177375789 + L2 LINE L2 3145 3241 -31 2326 96 0 0 chr3 50149626 50149938 -177374640 + AluSx SINE Alu 1 312 0 2134 99 24 0 chr3 50150000 50150293 -177374285 + AluSp SINE Alu 1 300 -13 351 0 0 0 chr3 50150293 50150332 -177374246 + (CA)n Simple_repeat Simple_repeat 2 40 0 1493 176 0 53 chr3 50150991 50151310 -177373268 - AluJo SINE Alu -10 302 1 2351 83 0 3 chr3 50151323 50151635 -177372943 - AluSp SINE Alu -2 311 1 772 161 50 50 chr3 50151740 50151901 -177372677 + MER6A DNA MER2_type 1 161 -444 21 0 0 0 chr3 50152169 50152190 -177372388 + AT_rich Low_complexity Low_complexity 1 21 0 2114 77 0 21 chr3 50152422 50152732 -177371846 + AluSg SINE Alu 2 305 0 729 221 53 16 chr3 50152828 50153018 -177371560 - MER3 DNA MER1_type -12 197 1 2350 70 3 0 chr3 50153624 50153923 -177370655 + AluSp SINE Alu 1 300 -13 2147 72 41 3 chr3 50154661 50154953 -177369625 - AluY SINE Alu -8 303 1 198 171 0 0 chr3 50156123 50156164 -177368414 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 400 265 59 10 chr3 50156209 50156311 -177368267 + MIR SINE MIR 5 111 -151 751 145 7 0 chr3 50156430 50156568 -177368010 + L1MA7 LINE L1 6153 6291 0 430 355 110 23 chr3 50157638 50158283 -177366295 + L2 LINE L2 1543 2243 -1071 224 209 0 0 chr3 50158656 50158699 -177365879 + (CA)n Simple_repeat Simple_repeat 2 44 0 431 238 63 32 chr3 50159812 50159938 -177364640 + L2 LINE L2 2215 2344 -970 606 249 43 63 chr3 50159985 50160238 -177364340 + MLT1H LTR MaLR 51 298 -251 258 324 108 0 chr3 50160465 50160567 -177364011 + L2 LINE L2 2643 2755 -559 195 69 0 0 chr3 50160911 50160940 -177363638 + (TG)n Simple_repeat Simple_repeat 2 30 0 2117 107 3 0 chr3 50161345 50161643 -177362935 + AluSq SINE Alu 1 299 -14 1700 174 0 7 chr3 50161840 50162133 -177362445 + AluJo SINE Alu 1 291 -21 649 296 206 5 chr3 50162756 50162811 -177361767 - L2 LINE L2 -91 3222 3179 2056 126 0 7 chr3 50162811 50163120 -177361458 + AluSx SINE Alu 1 307 -5 649 296 206 5 chr3 50163120 50163483 -177361095 - L2 LINE L2 -134 3179 2717 387 0 0 0 chr3 50163952 50163995 -177360583 + (CA)n Simple_repeat Simple_repeat 1 43 0 317 228 26 26 chr3 50165566 50165680 -177358898 + L1MC4 LINE L1 3871 3984 -2162 433 269 173 19 chr3 50165698 50165906 -177358672 + L1MC4 LINE L1 5726 5965 -2077 419 315 56 25 chr3 50166131 50166328 -177358250 + L2 LINE L2 2356 2558 -756 527 309 77 25 chr3 50166870 50167271 -177357307 + L1MC4 LINE L1 5257 5678 -2130 1271 119 0 0 chr3 50167289 50167466 -177357112 + AluJb SINE Alu 121 297 -15 484 344 48 44 chr3 50167603 50167830 -177356748 + L1MEd LINE L1 530 757 -5362 2009 110 10 13 chr3 50167952 50168260 -177356318 - AluSq SINE Alu -6 307 1 298 252 136 53 chr3 50168280 50168486 -177356092 + L1MEd LINE L1 947 1169 -4950 302 274 22 111 chr3 50168541 50168676 -177355902 - L1MC4 LINE L1 -1315 6727 6605 292 192 77 13 chr3 50168677 50168755 -177355823 + L1MC4 LINE L1 6614 6696 -1346 * 443 278 77 44 chr3 50168750 50169008 -177355570 + L1MEd LINE L1 1321 1595 -4715 2131 111 0 0 chr3 50169008 50169345 -177355233 + AluSx SINE Alu 1 337 0 443 278 77 44 chr3 50169345 50169423 -177355155 + L1MEd LINE L1 1595 1669 -4641 3379 168 47 22 chr3 50169768 50170238 -177354340 + L1MB4 LINE L1 5478 5972 -208 2036 125 7 0 chr3 50170238 50170533 -177354045 + AluSq SINE Alu 1 297 -16 3379 168 47 22 chr3 50170533 50170747 -177353831 + L1MB4 LINE L1 5972 6179 -1 1051 231 33 12 chr3 50170756 50170999 -177353579 - MLT1E3 LTR MaLR -54 570 323 4236 89 5 2 chr3 50171134 50171686 -177352892 + MER41A LTR ERV1 1 554 0 354 91 338 13 chr3 50171772 50171849 -177352729 + MER41A-int LTR ERV1 1 102 -5844 4194 115 13 28 chr3 50171858 50172476 -177352102 + MER41A-int LTR ERV1 1 609 -5337 357 24 0 0 chr3 50172477 50172519 -177352059 + (TC)n Simple_repeat Simple_repeat 2 43 0 9603 128 51 35 chr3 50172529 50174932 -177349646 + MER41A-int LTR ERV1 2565 4145 -870 4179 56 29 2 chr3 50174925 50175442 -177349136 + MER41A-int LTR ERV1 5414 5944 -2 * 4301 78 0 23 chr3 50175443 50175884 -177348694 + MER41A LTR ERV1 1 428 -126 2365 62 3 3 chr3 50175884 50176189 -177348389 - AluY SINE Alu -6 305 1 4301 78 0 23 chr3 50176189 50176314 -177348264 + MER41A LTR ERV1 428 554 0 785 261 64 0 chr3 50176329 50176547 -177348031 - MLT1E3 LTR MaLR -322 332 101 252 59 0 0 chr3 50176723 50176757 -177347821 + (TG)n Simple_repeat Simple_repeat 1 34 0 188 284 167 0 chr3 50178238 50178340 -177346238 - MIR SINE MIR -55 153 35 186 43 0 0 chr3 50179026 50179049 -177345529 + (GGA)n Simple_repeat Simple_repeat 1 23 0 235 200 0 0 chr3 50179059 50179104 -177345474 + (AGCGG)n Simple_repeat Simple_repeat 3 47 0 232 365 29 0 chr3 50180399 50180503 -177344075 - MIR SINE MIR -58 204 98 202 301 43 27 chr3 50180637 50180790 -177343788 + MIR SINE MIR 56 212 -50 394 243 46 17 chr3 50181241 50181414 -177343164 + (TG)n Simple_repeat Simple_repeat 1 178 0 341 250 136 30 chr3 50182490 50182622 -177341956 + L2 LINE L2 3126 3271 -1 247 296 20 10 chr3 50182630 50182728 -177341850 - MIR SINE MIR -2 260 162 652 219 19 26 chr3 50183096 50183251 -177341327 - MIR SINE MIR -84 178 25 268 176 162 27 chr3 50184552 50184626 -177339952 + MIR SINE MIR 109 192 -70 1488 138 181 0 chr3 50186389 50186643 -177337935 - AluSg SINE Alu 0 300 1 834 127 0 22 chr3 50186859 50186993 -177337585 + AluSx SINE Alu 29 159 -153 2063 129 0 0 chr3 50187245 50187554 -177337024 + AluSx SINE Alu 1 309 -3 180 243 0 0 chr3 50187592 50187629 -177336949 - L3b LINE CR1 -6 1577 1541 277 273 98 21 chr3 50187644 50187787 -177336791 + MIR SINE MIR 41 194 -68 274 231 0 0 chr3 50188687 50188739 -177335839 - MER5A DNA MER1_type -137 52 1 814 285 138 6 chr3 50188763 50189096 -177335482 + MLT1J LTR MaLR 99 475 -36 612 258 31 52 chr3 50189715 50190002 -177334576 - HAL1 LINE L1 -1 2506 2226 2670 184 67 36 chr3 50190048 50190629 -177333949 - MLT1E2 LTR MaLR -1 625 27 235 288 63 18 chr3 50190660 50190771 -177333807 - HAL1 LINE L1 -397 2110 1995 316 237 51 34 chr3 50191086 50191204 -177333374 + L1ME LINE L1 5680 5799 -363 669 172 108 108 chr3 50191224 50191291 -177333287 - MER3 DNA MER1_type 0 209 143 2015 105 0 51 chr3 50191291 50191605 -177332973 + AluSq SINE Alu 1 298 -15 1708 158 30 10 chr3 50191615 50191913 -177332665 + AluJb SINE Alu 1 304 -8 669 172 108 108 chr3 50191913 50192038 -177332540 - MER3 DNA MER1_type -74 135 6 1409 163 41 8 chr3 50192042 50192287 -177332291 + MSTD LTR MaLR 144 396 0 185 339 55 28 chr3 50192355 50192464 -177332114 - MIR SINE MIR -4 258 147 317 97 132 0 chr3 50192684 50192744 -177331834 - MLT1E3 LTR MaLR 0 624 438 366 147 40 0 chr3 50192744 50192819 -177331759 + L1M LINE L1 5260 5337 -843 617 88 0 0 chr3 50192924 50193004 -177331574 - AluS SINE Alu -232 80 1 1575 187 18 0 chr3 50193153 50193460 -177331118 - AluSx SINE Alu 0 312 1 275 231 154 15 chr3 50193557 50193687 -177330891 - HAL1b LINE L1 -504 844 697 371 301 18 18 chr3 50193697 50193863 -177330715 - HAL1b LINE L1 -701 647 482 254 179 134 0 chr3 50193950 50194017 -177330561 - HAL1b LINE L1 -992 356 281 379 203 80 80 chr3 50194302 50194440 -177330138 + MIR SINE MIR 125 262 0 248 398 58 0 chr3 50194440 50194543 -177330035 - L2 LINE L2 -48 3224 3116 1575 196 97 32 chr3 50194544 50194938 -177329640 - LTR48B LTR ERV1 0 644 173 1917 96 79 11 chr3 50194938 50195218 -177329360 + AluSx SINE Alu 6 304 -8 1575 196 97 32 chr3 50195218 50195404 -177329174 - LTR48B LTR ERV1 -471 173 1 194 302 105 0 chr3 50195849 50195935 -177328643 - MIR3 SINE MIR 0 208 114 1332 174 5 0 chr3 50196637 50196850 -177327728 - AluJb SINE Alu -98 214 1 1041 132 25 11 chr3 50196862 50197038 -177327540 - AluJo SINE Alu -22 290 132 1686 6 0 0 chr3 50197578 50197758 -177326820 - AluYa5 SINE Alu -8 303 124 2699 144 38 33 chr3 50198630 50198799 -177325779 - L1MB4 LINE L1 -3 6177 6010 1951 157 14 0 chr3 50198799 50199092 -177325486 + AluJb SINE Alu 1 297 -15 2699 144 38 33 chr3 50199092 50199444 -177325134 - L1MB4 LINE L1 -170 6010 5653 810 153 8 0 chr3 50199453 50199577 -177325001 - FLAM_C SINE Alu -18 125 1 2392 121 38 0 chr3 50199578 50199951 -177324627 - L1MB4 LINE L1 -507 5673 5287 5119 173 81 19 chr3 50199960 50201141 -177323437 + L1MD2 LINE L1 4852 6126 -233 2144 120 0 20 chr3 50201141 50201442 -177323136 - AluSx SINE Alu -17 295 1 5119 173 81 19 chr3 50201442 50201690 -177322888 + L1MD2 LINE L1 6126 6357 -2 231 281 116 33 chr3 50202072 50202193 -177322385 + L2 LINE L2 297 427 -2887 2223 96 0 0 chr3 50202569 50202849 -177321729 + AluSx SINE Alu 1 280 -32 296 24 0 24 chr3 50202849 50202891 -177321687 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 226 241 125 38 chr3 50203787 50203963 -177320615 - MIR SINE MIR -74 188 2 216 280 0 0 chr3 50204256 50204306 -177320272 + GA-rich Low_complexity Low_complexity 2 51 0 2399 77 13 0 chr3 50204508 50204808 -177319770 - AluSx SINE Alu -8 304 1 2237 166 68 118 chr3 50204818 50205041 -177319537 - L1MC2 LINE L1 -1 6343 6110 1876 173 0 0 chr3 50205041 50205325 -177319253 - AluJo SINE Alu -28 284 1 2237 166 68 118 chr3 50205325 50205776 -177318802 - L1MC2 LINE L1 -234 6110 5703 6239 103 230 91 chr3 50205778 50207267 -177317311 - pTR5 LTR ERV1 0 2438 743 6102 198 40 44 chr3 50207267 50207638 -177316940 - L1MC2 LINE L1 -640 5704 5333 2381 102 0 0 chr3 50207638 50207942 -177316636 - AluSq SINE Alu -9 304 1 6102 198 40 44 chr3 50207942 50208077 -177316501 - L1MC2 LINE L1 -1011 5333 5199 2283 105 20 0 chr3 50208077 50208383 -177316195 - AluSx SINE Alu 0 312 1 6102 198 40 44 chr3 50208383 50208810 -177315768 - L1MC2 LINE L1 -1145 5199 4772 2301 90 3 13 chr3 50208810 50209109 -177315469 - AluSq SINE Alu -17 296 1 6102 198 40 44 chr3 50209109 50210154 -177314424 - L1MC2 LINE L1 -1572 4772 3728 563 118 0 0 chr3 50210171 50210256 -177314322 - AluJ/FRAM SINE Alu -8 304 220 368 264 68 17 chr3 50210257 50210393 -177314185 + LTR26 LTR ERV1 459 690 -1 229 262 0 16 chr3 50210407 50210468 -177314110 + CT-rich Low_complexity Low_complexity 2 61 0 256 229 121 0 chr3 50211169 50211209 -177313369 + MER5B DNA MER1_type 7 41 -137 1470 76 0 11 chr3 50211209 50211394 -177313184 + AluSp SINE Alu 120 302 -11 256 229 121 0 chr3 50211394 50211436 -177313142 + MER5B DNA MER1_type 41 99 -79 355 229 59 17 chr3 50211586 50211704 -177312874 - MIR SINE MIR -56 206 84 241 258 0 30 chr3 50212341 50212407 -177312171 - Charlie8 DNA MER1_type -2210 207 144 3589 114 21 30 chr3 50212410 50212992 -177311586 + MER4B LTR ERV1 1 733 -46 2233 123 0 3 chr3 50212992 50213294 -177311284 + AluSx SINE Alu 1 301 -11 3589 114 21 30 chr3 50213294 50213341 -177311237 + MER4B LTR ERV1 733 779 0 246 184 66 79 chr3 50213364 50213440 -177311138 - Charlie8 DNA MER1_type -2304 113 39 2471 170 0 0 chr3 50213443 50213842 -177310736 + MER57A LTR ERV1 1 399 -4 832 219 12 6 chr3 50213842 50214011 -177310567 - AluJb SINE Alu -21 291 122 2412 194 83 12 chr3 50214035 50214529 -177310049 - MER77 LTR ERV1 -69 536 8 283 269 51 45 chr3 50214629 50214785 -177309793 - MER5B DNA MER1_type -21 157 1 996 257 116 19 chr3 50215181 50215551 -177309027 - L2 LINE L2 0 3313 2908 214 313 0 0 chr3 50215661 50215725 -177308853 + MER5B DNA MER1_type 1 64 -114 834 129 0 0 chr3 50215847 50215987 -177308591 + L1ME1 LINE L1 5313 5452 -710 35 0 0 0 chr3 50215987 50216022 -177308556 + AT_rich Low_complexity Low_complexity 1 35 0 607 141 0 0 chr3 50216022 50216114 -177308464 - AluSg/x SINE Alu -9 300 209 320 95 0 0 chr3 50216114 50216156 -177308422 - AluSg/x SINE Alu -45 255 214 * 348 87 0 0 chr3 50216154 50216200 -177308378 - AluSg/x SINE Alu -39 261 216 1969 126 0 0 chr3 50216200 50216463 -177308115 - AluSx SINE Alu -49 263 1 2060 123 3 3 chr3 50216463 50216788 -177307790 - AluSq SINE Alu 0 325 1 3395 188 25 28 chr3 50216788 50217477 -177307101 + L1ME1 LINE L1 5436 6124 -42 1590 191 50 3 chr3 50217477 50217760 -177306818 - AluJb SINE Alu -16 296 1 3395 188 25 28 chr3 50217760 50217798 -177306780 + L1ME1 LINE L1 6124 6161 -5 889 260 18 9 chr3 50217807 50218034 -177306544 + L1ME3 LINE L1 5934 6162 0 369 314 34 8 chr3 50218047 50218165 -177306413 - MER5B DNA MER1_type -57 121 1 252 0 0 0 chr3 50218701 50218729 -177305849 + (TG)n Simple_repeat Simple_repeat 2 29 0 253 230 54 27 chr3 50218741 50218815 -177305763 + L1M4 LINE L1 2958 3033 -3113 227 225 37 118 chr3 50218799 50218986 -177305592 - L1MDa LINE L1 -3163 3377 3206 * 463 221 61 15 chr3 50219121 50219252 -177305326 - L2 LINE L2 -585 2729 2593 274 323 10 0 chr3 50219255 50219351 -177305227 - L2 LINE L2 -666 2648 2552 21 36 0 0 chr3 50220007 50220035 -177304543 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 50221445 50221469 -177303109 + AT_rich Low_complexity Low_complexity 1 24 0 2321 120 0 0 chr3 50221801 50222110 -177302468 - AluSx SINE Alu -3 309 1 309 191 132 0 chr3 50226273 50226341 -177298237 + MIR3 SINE MIR 132 208 0 25 31 0 0 chr3 50230936 50230968 -177293610 + AT_rich Low_complexity Low_complexity 1 32 0 408 132 53 13 chr3 50232341 50232417 -177292161 + AluJ/FRAM SINE Alu 217 295 -17 2288 107 0 7 chr3 50233380 50233680 -177290898 - AluSg SINE Alu -12 298 1 701 246 94 10 chr3 50233740 50234075 -177290503 - L1MDa LINE L1 -4119 2421 2111 343 306 10 15 chr3 50234351 50234483 -177290095 - L1MDa LINE L1 -5937 593 22 265 311 40 7 chr3 50234915 50235066 -177289512 - MIR3 SINE MIR -19 189 34 1049 255 67 61 chr3 50235088 50235582 -177288996 + L2 LINE L2 2817 3313 0 341 305 47 47 chr3 50235677 50235913 -177288665 - MLT1H LTR MaLR -195 354 119 271 286 44 50 chr3 50237390 50237572 -177287006 - L3 LINE CR1 -46 1531 1351 2249 107 0 0 chr3 50238240 50238538 -177286040 + AluSx SINE Alu 1 298 -14 232 218 92 0 chr3 50239542 50239629 -177284949 - MIR SINE MIR -91 171 77 1918 71 0 17 chr3 50239949 50240189 -177284389 + AluSq SINE Alu 1 236 -77 372 279 33 16 chr3 50240693 50240815 -177283763 + MIR3 SINE MIR 54 177 -31 579 293 65 4 chr3 50241350 50241579 -177282999 + MIR SINE MIR 20 262 0 1155 196 30 0 chr3 50243528 50243763 -177280815 + MIR SINE MIR 13 254 -8 310 245 242 17 chr3 50243954 50244134 -177280444 + MIR SINE MIR 20 240 -22 2690 52 0 0 chr3 50244175 50244484 -177280094 - AluY SINE Alu -2 309 1 321 280 174 8 chr3 50245000 50245132 -177279446 - MIR SINE MIR -77 185 32 187 258 90 0 chr3 50245141 50245230 -177279348 - L3 LINE CR1 -111 1466 1370 649 80 0 60 chr3 50245231 50245331 -177279247 + AluJb SINE Alu 30 123 -189 393 188 0 0 chr3 50245334 50245419 -177279159 + (TA)n Simple_repeat Simple_repeat 2 86 0 951 183 0 0 chr3 50245419 50245619 -177278959 + AluJb SINE Alu 130 329 0 1055 284 191 4 chr3 50246514 50246990 -177277588 - MLT1K LTR MaLR -22 566 2 2221 115 3 0 chr3 50247253 50247548 -177277030 - AluSx SINE Alu -16 296 1 571 259 253 3 chr3 50248269 50248558 -177276020 + L2 LINE L2 2933 3293 -20 243 340 49 1 chr3 50249760 50249891 -177274687 - MIR SINE MIR -44 164 68 11443 53 6 0 chr3 50249917 50252089 -177272489 + L1PA6 LINE L1 3976 6154 0 408 303 30 0 chr3 50252321 50252453 -177272125 + MIR3 SINE MIR 41 176 -32 286 278 144 0 chr3 50252490 50252580 -177271998 + MIR SINE MIR 44 146 -62 346 255 21 0 chr3 50253528 50253622 -177270956 - MLT1J LTR MaLR -140 371 276 299 291 151 70 chr3 50253686 50254102 -177270476 + L2 LINE L2 2821 3270 -2 199 342 13 0 chr3 50256169 50256248 -177268330 - MIR3 SINE MIR -46 162 83 192 309 160 21 chr3 50256256 50256350 -177268228 - MIR SINE MIR -86 122 16 184 242 99 55 chr3 50256938 50257029 -177267549 + MIR3 SINE MIR 92 186 -22 469 244 0 0 chr3 50257439 50257529 -177267049 - MER5A DNA MER1_type -83 106 17 320 262 12 0 chr3 50257583 50257667 -177266911 - MIR3 SINE MIR -38 170 86 303 256 12 12 chr3 50259188 50259274 -177265304 - LTR67 LTR ERVL 0 557 472 522 213 167 20 chr3 50259830 50259980 -177264598 - MLT1H1 LTR MaLR -5 550 379 319 246 14 0 chr3 50260058 50260127 -177264451 - MER96 DNA MER1_type? 0 175 106 288 292 37 71 chr3 50260616 50260938 -177263640 - L1MEc LINE L1 -6013 383 73 394 327 50 35 chr3 50260954 50261214 -177263364 - L1M4c LINE L1 -3899 2485 2222 404 172 0 47 chr3 50311216 50311318 -177213260 - AluS SINE Alu -243 59 1 4979 220 41 39 chr3 50311319 50311702 -177212876 - L1M4 LINE L1 -988 5158 4777 2327 90 3 13 chr3 50311702 50312001 -177212577 - AluSq SINE Alu -17 296 1 4979 220 41 39 chr3 50312001 50313046 -177211532 - L1M4 LINE L1 -1369 4777 3728 514 129 0 0 chr3 50313063 50313148 -177211430 - AluJ/FRAM SINE Alu -8 304 220 363 264 68 17 chr3 50313149 50313285 -177211293 + LTR26 LTR ERV1 459 690 -1 229 262 0 16 chr3 50313299 50313360 -177211218 + CT-rich Low_complexity Low_complexity 2 61 0 270 229 121 0 chr3 50314061 50314101 -177210477 + MER5B DNA MER1_type 7 41 -137 1453 87 0 11 chr3 50314101 50314286 -177210292 + AluSp SINE Alu 120 302 -11 270 229 121 0 chr3 50314286 50314328 -177210250 + MER5B DNA MER1_type 41 99 -79 386 229 59 17 chr3 50314478 50314596 -177209982 - MIR SINE MIR -56 206 84 245 258 0 30 chr3 50315233 50315299 -177209279 - Charlie8 DNA MER1_type -2210 207 144 3399 116 20 30 chr3 50315302 50315884 -177208694 + MER4B LTR ERV1 1 733 -46 2262 123 0 3 chr3 50315884 50316186 -177208392 + AluSx SINE Alu 1 301 -11 3399 116 20 30 chr3 50316186 50316233 -177208345 + MER4B LTR ERV1 733 779 0 227 184 66 79 chr3 50316256 50316332 -177208246 - Charlie8 DNA MER1_type -2304 113 39 2341 170 0 0 chr3 50316335 50316734 -177207844 + MER57A LTR ERV1 1 399 -4 865 219 12 6 chr3 50316734 50316903 -177207675 - AluJb SINE Alu -21 291 122 2310 196 83 12 chr3 50316927 50317421 -177207157 - MER77 LTR ERV1 -69 536 8 480 287 30 12 chr3 50317510 50317677 -177206901 + MER5B DNA MER1_type 9 178 0 1078 273 105 8 chr3 50318073 50318443 -177206135 - L2 LINE L2 0 3313 2908 228 356 0 0 chr3 50318553 50318626 -177205952 + MER5B DNA MER1_type 1 73 -105 780 129 0 0 chr3 50318739 50318879 -177205699 + L1ME1 LINE L1 5313 5452 -710 26 0 0 0 chr3 50318879 50318905 -177205673 + AT_rich Low_complexity Low_complexity 1 26 0 573 158 0 0 chr3 50318905 50319006 -177205572 - AluSg/x SINE Alu 0 312 212 313 95 0 0 chr3 50319006 50319048 -177205530 - AluSg/x SINE Alu -45 255 214 * 341 87 0 0 chr3 50319046 50319092 -177205486 - AluSg/x SINE Alu -39 263 218 1959 129 0 0 chr3 50319092 50319355 -177205223 - AluSx SINE Alu -49 263 1 2071 124 3 3 chr3 50319355 50319680 -177204898 - AluSq SINE Alu 0 325 1 3229 197 24 17 chr3 50319680 50320362 -177204216 + L1ME1 LINE L1 5436 6125 -41 1683 186 48 3 chr3 50320362 50320652 -177203926 - AluJb SINE Alu -9 303 1 3229 197 24 17 chr3 50320652 50320690 -177203888 + L1ME1 LINE L1 6125 6161 -5 880 260 18 9 chr3 50320699 50320926 -177203652 + L1ME3 LINE L1 5934 6162 0 398 323 31 8 chr3 50320930 50321057 -177203521 - MER5B DNA MER1_type -48 130 1 306 0 0 0 chr3 50321593 50321627 -177202951 + (TG)n Simple_repeat Simple_repeat 2 35 0 242 230 54 27 chr3 50321639 50321713 -177202865 + L1M4 LINE L1 2958 3033 -3113 * 361 297 21 77 chr3 50321697 50321968 -177202610 - L1MDa LINE L1 -3163 3377 3125 1435 177 92 15 chr3 50321968 50322239 -177202339 - AluJo SINE Alu -20 292 1 361 297 21 77 chr3 50322239 50322294 -177202284 - L1MDa LINE L1 -3415 3125 3069 394 132 53 13 chr3 50323024 50323100 -177201478 + AluJ/FRAM SINE Alu 217 295 -7 2322 118 0 0 chr3 50324057 50324363 -177200215 - AluSg SINE Alu -4 306 1 641 246 91 10 chr3 50324436 50324758 -177199820 - L1MDa LINE L1 -4119 2421 2111 346 312 13 16 chr3 50325007 50325166 -177199412 - L1MDa LINE L1 -5909 621 22 315 318 40 7 chr3 50325598 50325749 -177198829 - MIR3 SINE MIR -19 189 34 1115 259 67 61 chr3 50325771 50326265 -177198313 + L2 LINE L2 2817 3313 0 344 305 47 47 chr3 50326360 50326596 -177197982 - MLT1H LTR MaLR -195 354 119 331 302 39 44 chr3 50328073 50328255 -177196323 - L3 LINE CR1 -46 1531 1351 2282 110 0 0 chr3 50328922 50329223 -177195355 + AluSx SINE Alu 1 301 -11 275 279 74 0 chr3 50330189 50330311 -177194267 - MIR SINE MIR -55 207 77 1939 71 0 17 chr3 50330631 50330871 -177193707 + AluSq SINE Alu 1 236 -77 402 284 57 14 chr3 50331375 50331516 -177193062 + MIR3 SINE MIR 54 200 -8 640 301 61 0 chr3 50332032 50332261 -177192317 + MIR SINE MIR 20 262 0 1213 209 28 4 chr3 50334199 50334453 -177190125 + MIR SINE MIR 3 262 0 336 255 228 15 chr3 50334636 50334836 -177189742 + MIR SINE MIR 20 262 0 2712 52 0 0 chr3 50334857 50335166 -177189412 - AluY SINE Alu -2 309 1 356 287 169 7 chr3 50335678 50335814 -177188764 - MIR SINE MIR -73 189 32 212 258 90 0 chr3 50335823 50335912 -177188666 - L3 LINE CR1 -111 1466 1370 629 80 0 60 chr3 50335913 50336013 -177188565 + AluJb SINE Alu 30 123 -189 310 318 45 0 chr3 50336013 50336101 -177188477 + L1MC4 LINE L1 6610 6701 -1341 972 183 0 0 chr3 50336101 50336305 -177188273 + AluJb SINE Alu 130 333 0 1088 290 189 2 chr3 50337200 50337676 -177186902 - MLT1K LTR MaLR -22 566 2 2225 109 0 0 chr3 50337939 50338223 -177186355 - AluSx SINE Alu -16 296 13 556 259 253 3 chr3 50338955 50339244 -177185334 + L2 LINE L2 2933 3293 -20 248 340 49 1 chr3 50340446 50340577 -177184001 - MIR SINE MIR -44 164 68 10742 53 6 0 chr3 50340603 50342775 -177181803 + L1PA6 LINE L1 3976 6154 0 388 303 30 0 chr3 50343007 50343139 -177181439 + MIR3 SINE MIR 41 176 -32 275 278 144 0 chr3 50343176 50343266 -177181312 + MIR SINE MIR 44 146 -62 332 244 22 0 chr3 50344218 50344308 -177180270 - MLT1J LTR MaLR -144 367 276 264 292 0 0 chr3 50344723 50344788 -177179790 + L2 LINE L2 3247 3311 -2 193 342 13 0 chr3 50346855 50346934 -177177644 - MIR3 SINE MIR -46 162 83 184 309 160 21 chr3 50346942 50347036 -177177542 - MIR SINE MIR -86 122 16 464 244 0 0 chr3 50348125 50348215 -177176363 - MER5A DNA MER1_type -83 106 17 308 262 12 0 chr3 50348269 50348353 -177176225 - MIR3 SINE MIR -38 170 86 303 256 12 12 chr3 50349874 50349960 -177174618 - LTR67 LTR ERVL 0 557 472 522 213 167 20 chr3 50350516 50350666 -177173912 - MLT1H1 LTR MaLR -5 550 379 319 246 14 0 chr3 50350744 50350813 -177173765 - MER96 DNA MER1_type? 0 175 106 288 292 37 71 chr3 50351302 50351624 -177172954 - L1MEc LINE L1 -6013 383 73 507 291 149 38 chr3 50351640 50352055 -177172523 - L1MEc LINE L1 -3899 2232 1825 349 306 62 49 chr3 50352056 50352263 -177172315 - L1MEc LINE L1 -4517 1793 1590 2157 111 0 0 chr3 50352263 50352600 -177171978 - AluSx SINE Alu 0 337 1 349 306 62 49 chr3 50352600 50352858 -177171720 - L1MEc LINE L1 -4720 1590 1321 271 238 0 12 chr3 50352853 50352933 -177171645 - L1MC4 LINE L1 -1346 6696 6618 * 316 274 32 42 chr3 50352936 50353031 -177171547 + L1MC4 LINE L1 6610 6703 -1339 251 293 169 40 chr3 50353055 50353328 -177171250 - L1MEc LINE L1 -4865 1254 947 2075 111 10 10 chr3 50353348 50353655 -177170923 + AluSq SINE Alu 1 307 -6 240 339 48 44 chr3 50353777 50354004 -177170574 - L1MEc LINE L1 -5362 757 530 1284 123 0 0 chr3 50354139 50354318 -177170260 - AluJb SINE Alu -13 299 121 471 314 75 22 chr3 50354336 50354737 -177169841 - L1MC4 LINE L1 -2130 5678 5257 409 345 35 5 chr3 50355279 50355476 -177169102 - L2 LINE L2 -756 2558 2356 447 304 139 31 chr3 50355519 50355909 -177168669 - L1MD3 LINE L1 -194 6139 5726 304 228 26 26 chr3 50355927 50356041 -177168537 - L1MC4 LINE L1 -2162 3984 3871 1264 229 88 0 chr3 50356148 50356453 -177168125 + MLT1E1 LTR MaLR 1 332 -322 4396 78 0 14 chr3 50356468 50356593 -177167985 - MER41A LTR ERV1 0 554 429 2380 68 3 3 chr3 50356593 50356903 -177167675 + AluY SINE Alu 1 310 -1 4396 78 0 14 chr3 50356903 50357339 -177167239 - MER41A LTR ERV1 -125 429 1 3961 56 29 2 chr3 50357340 50357857 -177166721 - MER41A-int LTR ERV1 -2 5944 5414 * 9002 128 51 35 chr3 50357850 50360253 -177164325 - MER41A-int LTR ERV1 -870 4921 2565 396 0 0 0 chr3 50360263 50360307 -177164271 + (GA)n Simple_repeat Simple_repeat 2 45 0 4032 128 29 37 chr3 50360308 50361012 -177163566 - MER41A-int LTR ERV1 -5337 609 1 4311 89 5 2 chr3 50361098 50361650 -177162928 - MER41A LTR ERV1 0 554 1 1022 235 43 21 chr3 50361785 50362066 -177162512 + MLT1E1 LTR MaLR 323 609 -15 4362 162 49 8 chr3 50362068 50362241 -177162337 - L1MB4 LINE L1 -33 6147 5983 2053 134 7 0 chr3 50362241 50362546 -177162032 - AluSq SINE Alu -6 307 1 4362 162 49 8 chr3 50362546 50363225 -177161353 - L1MB4 LINE L1 -197 5983 5260 295 97 132 0 chr3 50363225 50363285 -177161293 + MLT1E3 LTR MaLR 438 624 0 250 339 55 28 chr3 50363505 50363614 -177160964 + MIR SINE MIR 147 258 -4 1349 163 41 8 chr3 50363682 50363927 -177160651 - MSTD LTR MaLR 0 396 144 637 172 108 108 chr3 50363931 50364056 -177160522 + MER3 DNA MER1_type 6 130 -79 1742 158 30 10 chr3 50364056 50364354 -177160224 - AluJb SINE Alu -8 304 1 2041 104 0 54 chr3 50364364 50364680 -177159898 - AluSq SINE Alu -14 299 1 637 172 108 108 chr3 50364680 50364747 -177159831 + MER3 DNA MER1_type 138 209 0 303 314 17 0 chr3 50364767 50364885 -177159693 - L1ME LINE L1 -363 5799 5680 240 297 63 18 chr3 50365200 50365311 -177159267 + HAL1 LINE L1 1995 2110 -397 2584 188 67 36 chr3 50365342 50365923 -177158655 + MLT1E2 LTR MaLR 27 625 -1 589 293 14 35 chr3 50365969 50366256 -177158322 + HAL1 LINE L1 2226 2506 -1 227 270 22 34 chr3 50366541 50366630 -177157948 - L1M2b LINE L1 -6116 1093 1006 854 294 135 3 chr3 50366875 50367208 -177157370 - MLT1J LTR MaLR -36 475 99 266 231 0 0 chr3 50367232 50367284 -177157294 + MER5A DNA MER1_type 1 52 -137 264 294 91 14 chr3 50368184 50368327 -177156251 - MIR SINE MIR -68 194 41 180 313 0 0 chr3 50368331 50368379 -177156199 + L3b LINE CR1 1530 1577 -6 2092 129 0 0 chr3 50368417 50368726 -177155852 - AluSx SINE Alu -3 309 1 846 138 0 22 chr3 50368978 50369116 -177155462 - AluSx SINE Alu -153 159 25 1518 142 181 0 chr3 50369328 50369582 -177154996 + AluSg SINE Alu 1 300 0 245 176 162 27 chr3 50371345 50371419 -177153159 - MIR SINE MIR -70 192 109 629 230 19 25 chr3 50372720 50372881 -177151697 + MIR SINE MIR 25 184 -78 252 306 20 10 chr3 50373243 50373341 -177151237 + MIR SINE MIR 162 260 -2 336 277 143 0 chr3 50373349 50373468 -177151110 - L2 LINE L2 -1 3271 3136 185 345 69 26 chr3 50373499 50373615 -177150963 - L2 LINE L2 -3 3269 3149 394 243 46 17 chr3 50374557 50374730 -177149848 + (CA)n Simple_repeat Simple_repeat 1 178 0 227 320 59 33 chr3 50375181 50375334 -177149244 - MIR SINE MIR -50 212 56 238 365 29 0 chr3 50375468 50375572 -177149006 + MIR SINE MIR 98 204 -58 235 200 0 0 chr3 50376866 50376911 -177147667 + (CTCCG)n Simple_repeat Simple_repeat 2 46 0 186 43 0 0 chr3 50376921 50376944 -177147634 + (TCC)n Simple_repeat Simple_repeat 1 23 0 200 284 167 0 chr3 50377630 50377732 -177146846 + MIR SINE MIR 35 153 -55 369 198 0 0 chr3 50379213 50379329 -177145249 + (CA)n Simple_repeat Simple_repeat 1 116 0 599 182 0 11 chr3 50379344 50379525 -177145053 + (CA)n Simple_repeat Simple_repeat 2 180 0 447 196 0 0 chr3 50379540 50379683 -177144895 + (CA)n Simple_repeat Simple_repeat 2 144 0 39 22 0 0 chr3 50380382 50380428 -177144150 + AT_rich Low_complexity Low_complexity 1 46 0 784 293 222 51 chr3 50382877 50384617 -177139961 - L2 LINE L2 -562 2752 714 1958 261 109 13 chr3 50384634 50385735 -177138843 - L2 LINE L2 -4 3309 2093 211 162 0 88 chr3 50388965 50389033 -177135545 + CT-rich Low_complexity Low_complexity 4 65 0 182 278 270 22 chr3 50389406 50389762 -177134816 + L2 LINE L2 2090 2533 -781 439 305 114 0 chr3 50389766 50389933 -177134645 + MER5A DNA MER1_type 4 189 0 240 217 33 0 chr3 50390328 50390388 -177134190 + L2 LINE L2 3171 3232 -40 352 301 98 17 chr3 50392014 50392187 -177132391 - MIR SINE MIR -14 248 62 181 381 45 13 chr3 50392283 50392438 -177132140 + L2 LINE L2 2905 3064 -208 265 237 17 0 chr3 50392483 50392542 -177132036 + MIR3 SINE MIR 108 167 -41 676 211 0 0 chr3 50394643 50394766 -177129812 - FLAM_A SINE Alu -8 125 3 274 302 60 43 chr3 50394855 50394971 -177129607 + MIR3 SINE MIR 69 186 -22 205 86 0 29 chr3 50395331 50395366 -177129212 + (CACCC)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chr3 50395371 50395400 -177129178 + (CA)n Simple_repeat Simple_repeat 2 30 0 2136 74 0 61 chr3 50395647 50395958 -177128620 - AluSq SINE Alu -21 292 1 239 227 53 0 chr3 50396156 50396231 -177128347 - MIR SINE MIR -131 131 53 952 246 112 49 chr3 50396488 50396983 -177127595 - L2 LINE L2 -46 3267 2745 1934 163 0 0 chr3 50396985 50397292 -177127286 - AluJo SINE Alu -5 307 1 453 184 7 105 chr3 50397298 50397450 -177127128 - L1MC5 LINE L1 -32 7929 7793 215 164 55 0 chr3 50397464 50397519 -177127059 - L2 LINE L2 -814 2500 2443 270 200 40 0 chr3 50397562 50397637 -177126941 - MIR SINE MIR -66 196 119 1226 237 3 33 chr3 50397679 50398044 -177126534 - L1ME1 LINE L1 -5 6161 5817 1518 103 5 14 chr3 50398095 50398308 -177126270 + AluSx SINE Alu 1 211 -101 625 296 141 45 chr3 50398321 50398747 -177125831 + LTR67 LTR ERVL 5 471 -86 302 335 57 6 chr3 50398814 50398972 -177125606 + ERVL LTR ERVL 1106 1271 -4383 562 302 24 28 chr3 50399134 50399346 -177125232 + ERVL LTR ERVL 1496 1706 -4058 527 310 26 0 chr3 50399337 50399492 -177125086 + ERVL LTR ERVL 4401 4559 -1205 * 644 276 70 60 chr3 50399494 50399809 -177124769 + HAL1 LINE L1 3 320 -2187 645 249 201 8 chr3 50399900 50400149 -177124429 + HAL1 LINE L1 517 813 -1694 2495 88 51 20 chr3 50400153 50400506 -177124072 + THE1B LTR MaLR 1 364 0 3292 190 42 68 chr3 50400532 50401639 -177122939 + L1MD2 LINE L1 3 1138 -5268 276 30 0 0 chr3 50401639 50401672 -177122906 + (TG)n Simple_repeat Simple_repeat 2 34 0 3292 190 42 68 chr3 50401672 50402060 -177122518 + L1MD2 LINE L1 1138 1685 -4721 1713 136 4 51 chr3 50402060 50402333 -177122245 + AluSx SINE Alu 38 297 -15 3292 190 42 68 chr3 50402333 50402440 -177122138 + L1MD2 LINE L1 1685 1793 -4613 2540 234 64 9 chr3 50402440 50403189 -177121389 + L1MD2 LINE L1 4497 5286 -1120 463 222 87 8 chr3 50403169 50403198 -177121380 + L1MB3 LINE L1 4665 4690 -1456 * 2029 154 6 25 chr3 50403198 50403523 -177121055 + 7SLRNA srpRNA srpRNA 1 319 -1 463 222 87 8 chr3 50403523 50403619 -177120959 + L1MB3 LINE L1 4690 4800 -1346 712 143 8 0 chr3 50403620 50403739 -177120839 + MLT2B2 LTR ERVL 2 121 -394 3786 135 44 13 chr3 50403739 50403819 -177120759 + L1MB3 LINE L1 5528 5604 -579 2413 86 7 0 chr3 50403819 50404120 -177120458 + AluY SINE Alu 1 303 -8 3786 135 44 13 chr3 50404120 50404674 -177119904 + L1MB3 LINE L1 5604 6182 -1 4198 195 48 26 chr3 50404749 50405849 -177118729 + L1MD2 LINE L1 5272 6422 -197 414 57 0 0 chr3 50405849 50405902 -177118676 + (CA)n Simple_repeat Simple_repeat 2 54 0 4198 195 48 26 chr3 50405902 50405996 -177118582 + L1MD2 LINE L1 6422 6512 -107 713 133 87 92 chr3 50405996 50406214 -177118364 + MLT1A1 LTR MaLR 1 279 -117 5374 156 48 50 chr3 50406214 50407312 -177117266 - MLT1A1-int LTR MaLR -639 1096 1 1614 156 30 111 chr3 50407312 50407709 -177116869 - MLT1A1 LTR MaLR 0 365 1 3024 171 12 16 chr3 50407784 50408298 -177116280 - MLT2B2 LTR ERVL -3 512 1 661 287 98 50 chr3 50408629 50408769 -177115809 + LTR67 LTR ERVL 1 133 -424 2607 144 86 11 chr3 50408769 50409221 -177115357 + MER66B LTR ERV1 1 486 0 661 287 98 50 chr3 50409221 50409519 -177115059 + LTR67 LTR ERVL 133 460 -97 180 302 23 0 chr3 50409578 50409621 -177114957 - L2 LINE L2 -24 3248 3205 336 243 213 15 chr3 50409641 50409777 -177114801 + MIR SINE MIR 21 183 -79 2097 122 3 30 chr3 50410186 50410489 -177114089 - AluSx SINE Alu -16 296 2 572 277 93 48 chr3 50410490 50410866 -177113712 + MLT1I LTR MaLR 17 409 0 189 298 48 91 chr3 50411609 50411817 -177112761 + L2 LINE L2 3024 3222 -50 310 271 38 15 chr3 50415124 50415257 -177109321 + G-rich Low_complexity Low_complexity 5 140 0 223 331 175 13 chr3 50416976 50417130 -177107448 + MIR SINE MIR 28 206 -56 818 294 10 0 chr3 50417685 50417879 -177106699 - MER91A DNA MER1_type 0 196 1 233 262 78 19 chr3 50418258 50418361 -177106217 + MIR3 SINE MIR 91 199 -9 200 239 60 30 chr3 50418395 50418462 -177106116 + L2 LINE L2 2982 3050 -222 247 239 30 15 chr3 50419387 50419454 -177105124 - MER91A DNA MER1_type -128 68 1 210 71 0 0 chr3 50420271 50420299 -177104279 + (TCC)n Simple_repeat Simple_repeat 2 29 0 542 175 0 34 chr3 50420330 50420507 -177104071 + CT-rich Low_complexity Low_complexity 1 171 0 490 254 0 0 chr3 50421736 50421846 -177102732 + MER81 DNA DNA 5 114 0 193 220 40 20 chr3 50423249 50423299 -177101279 - MIR3 SINE MIR -45 163 113 223 238 48 0 chr3 50424515 50424578 -177100000 - MIR SINE MIR -79 129 64 27 81 0 0 chr3 50425076 50425138 -177099440 + GC_rich Low_complexity Low_complexity 1 62 0 32 0 0 0 chr3 50425200 50425232 -177099346 + GC_rich Low_complexity Low_complexity 1 32 0 185 62 0 31 chr3 50425365 50425397 -177099181 + (CCCCAG)n Simple_repeat Simple_repeat 3 33 0 213 315 133 42 chr3 50427335 50427478 -177097100 - L2 LINE L2 -251 3021 2866 462 281 79 34 chr3 50428486 50428664 -177095914 - MIR SINE MIR -72 190 5 1383 213 29 7 chr3 50429040 50429317 -177095261 - AluJo SINE Alu -18 294 12 1059 98 0 0 chr3 50429993 50430126 -177094452 - AluSq/x SINE Alu -180 133 1 238 188 29 72 chr3 50431372 50431441 -177093137 + MLT1E3 LTR MaLR 1 66 -439 1305 161 221 39 chr3 50431481 50431892 -177092686 + MLT1E3 LTR MaLR 139 624 0 315 0 0 0 chr3 50432387 50432422 -177092156 + (CA)n Simple_repeat Simple_repeat 1 35 0 2262 107 3 0 chr3 50433989 50434287 -177090291 - AluSq SINE Alu -14 299 1 185 250 138 50 chr3 50434634 50434714 -177089864 - L2 LINE L2 -7 3306 3220 262 324 108 0 chr3 50435063 50435165 -177089413 - L2 LINE L2 -559 2755 2643 28 29 0 0 chr3 50435306 50435341 -177089237 + AT_rich Low_complexity Low_complexity 1 35 0 381 272 49 47 chr3 50437397 50437659 -177086919 + L1ME2 LINE L1 5678 5936 -234 2451 78 10 0 chr3 50437799 50438092 -177086486 - AluSg SINE Alu -14 296 1 320 270 204 13 chr3 50438421 50438573 -177086005 - L2 LINE L2 -2 3270 3090 315 312 96 16 chr3 50438580 50438705 -177085873 + MIR SINE MIR 58 192 -70 390 273 41 8 chr3 50439496 50439617 -177084961 + MIR3 SINE MIR 76 200 -8 * 495 316 108 31 chr3 50439604 50439892 -177084686 - L3 LINE CR1 -64 1513 1204 2368 59 42 3 chr3 50443764 50444052 -177080526 - AluY SINE Alu -12 299 1 195 42 0 0 chr3 50444608 50444632 -177079946 + (T)n Simple_repeat Simple_repeat 1 24 0 1845 174 0 7 chr3 50446348 50446641 -177077937 + AluJo SINE Alu 1 291 -21 1109 285 174 6 chr3 50447264 50447319 -177077259 - L2 LINE L2 -91 3222 3178 2234 125 0 6 chr3 50447319 50447631 -177076947 + AluSx SINE Alu 1 310 -2 1109 285 174 6 chr3 50447631 50448112 -177076466 - L2 LINE L2 -135 3178 2593 311 277 206 21 chr3 50448115 50448256 -177076322 - L2 LINE L2 -666 2648 2482 21 36 0 0 chr3 50448867 50448895 -177075683 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 50450305 50450329 -177074249 + AT_rich Low_complexity Low_complexity 1 24 0 2349 120 0 0 chr3 50450661 50450970 -177073608 - AluSx SINE Alu -3 309 1 334 275 138 0 chr3 50455094 50455203 -177069375 + MIR3 SINE MIR 85 208 0 25 31 0 0 chr3 50459798 50459830 -177064748 + AT_rich Low_complexity Low_complexity 1 32 0 1830 148 13 26 chr3 50460946 50461251 -177063327 + AluSx SINE Alu 1 301 -11 2470 76 0 0 chr3 50461319 50461621 -177062957 - AluSq SINE Alu -11 302 1 22 56 0 0 chr3 50461666 50461702 -177062876 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 50461769 50461790 -177062788 + AT_rich Low_complexity Low_complexity 1 21 0 1575 134 20 72 chr3 50462633 50462925 -177061653 + AluJo SINE Alu 1 277 -35 472 155 172 0 chr3 50463050 50463166 -177061412 - Charlie1 DNA MER1_type -4 2757 2622 * 796 223 30 20 chr3 50463149 50463346 -177061232 - Charlie1 DNA MER1_type -2519 242 44 21 0 0 0 chr3 50464287 50464308 -177060270 + AT_rich Low_complexity Low_complexity 1 21 0 2400 108 0 0 chr3 50464311 50464618 -177059960 + AluSx SINE Alu 1 307 -5 417 145 0 14 chr3 50465604 50465673 -177058905 + AluJ/FLAM SINE Alu 23 90 -222 422 240 40 20 chr3 50466564 50466664 -177057914 + L2 LINE L2 3156 3257 -15 244 309 49 49 chr3 50466722 50467010 -177057568 + HAL1b LINE L1 232 519 -829 350 276 135 6 chr3 50467023 50467179 -177057399 + HAL1b LINE L1 599 774 -574 299 233 108 8 chr3 50467396 50467525 -177057053 - L1MC4a LINE L1 -1785 6023 5882 1278 169 0 10 chr3 50467576 50467783 -177056795 - AluJb SINE Alu -19 293 89 2230 103 20 3 chr3 50467940 50468232 -177056346 - AluSg SINE Alu -13 297 1 33 25 0 0 chr3 50469158 50469198 -177055380 + AT_rich Low_complexity Low_complexity 1 40 0 2267 70 7 13 chr3 50469384 50469683 -177054895 + AluSp SINE Alu 1 297 -16 283 288 43 25 chr3 50469976 50470139 -177054439 + L1 LINE L1 4493 4658 -1488 373 259 135 42 chr3 50470201 50470394 -177054184 - L1MC4 LINE L1 -97 7945 7735 314 246 29 0 chr3 50470441 50470510 -177054068 + MER21B LTR ERV1 18 88 -775 2005 125 7 16 chr3 50470541 50470846 -177053732 - AluSx SINE Alu -10 302 1 1984 205 56 88 chr3 50470924 50471420 -177053158 + MER21B LTR ERV1 122 592 -271 1910 104 94 3 chr3 50471420 50471707 -177052871 + AluSq SINE Alu 1 313 0 1984 205 56 88 chr3 50471707 50471893 -177052685 + MER21B LTR ERV1 592 782 -81 309 281 0 0 chr3 50471961 50472057 -177052521 - L1MC4a LINE L1 -348 5826 5731 404 247 40 3 chr3 50472313 50472449 -177052129 - L1MC4 LINE L1 -668 7140 7027 240 291 142 15 chr3 50472461 50472595 -177051983 + MLT1J LTR MaLR 316 466 -45 752 191 0 26 chr3 50472690 50472831 -177051747 + FAM SINE Alu 1 40 -145 862 129 0 30 chr3 50472831 50472963 -177051615 - AluJo/FLAM SINE Alu -174 128 1 21 82 0 0 chr3 50472973 50473022 -177051556 + AT_rich Low_complexity Low_complexity 1 49 0 1298 205 75 80 chr3 50474329 50474699 -177049879 + L1M4 LINE L1 2121 2488 -3658 2045 131 0 28 chr3 50474699 50475020 -177049558 + AluSx SINE Alu 1 312 0 1298 205 75 80 chr3 50475020 50475240 -177049338 + L1M4 LINE L1 2488 2708 -3438 241 154 0 0 chr3 50475249 50475288 -177049290 + L1M4 LINE L1 2783 2821 -3325 595 225 124 9 chr3 50475302 50475640 -177048938 + L1M4 LINE L1 3031 3407 -2739 2289 95 3 7 chr3 50475655 50475959 -177048619 + AluSx SINE Alu 1 303 -9 1795 149 46 26 chr3 50476306 50476608 -177047970 - AluJo SINE Alu -4 308 1 1898 148 0 32 chr3 50476636 50476946 -177047632 - AluSx SINE Alu 0 312 13 24 0 0 0 chr3 50477039 50477063 -177047515 + AT_rich Low_complexity Low_complexity 1 24 0 686 207 270 34 chr3 50477117 50477258 -177047320 + L2 LINE L2 2715 2821 -492 1504 168 104 3 chr3 50477258 50477574 -177047004 - MER7A DNA MER2_type 0 346 1 686 207 270 34 chr3 50477574 50477723 -177046855 + L2 LINE L2 2821 3078 -235 291 114 0 0 chr3 50478736 50478780 -177045798 + (CGGGGG)n Simple_repeat Simple_repeat 4 47 0 1048 228 116 44 chr3 50479507 50479986 -177044592 - L1M4 LINE L1 -755 5391 4861 2751 0 0 0 chr3 50479986 50480281 -177044297 - AluYa5 SINE Alu -16 295 1 1048 228 116 44 chr3 50480281 50480389 -177044189 - L1M4 LINE L1 -1285 4861 4762 2461 55 0 0 chr3 50480427 50480720 -177043858 + AluY SINE Alu 1 293 -18 3468 158 26 40 chr3 50480779 50481063 -177043515 - L1MB3 LINE L1 -19 6164 5878 2391 80 0 3 chr3 50481063 50481365 -177043213 + AluSx SINE Alu 1 301 -11 3468 158 26 40 chr3 50481365 50481810 -177042768 - L1MB3 LINE L1 -305 5878 5445 235 191 0 0 chr3 50481810 50481857 -177042721 - L1M4 LINE L1 -1374 4772 4726 1293 129 81 0 chr3 50481869 50482079 -177042499 + MER30 DNA MER1_type 4 230 0 2268 104 0 7 chr3 50482119 50482418 -177042160 - AluSg SINE Alu -13 297 1 392 321 30 8 chr3 50482856 50482990 -177041588 + MIR3 SINE MIR 67 203 -5 2193 109 30 0 chr3 50483370 50483673 -177040905 + AluSx SINE Alu 1 312 0 309 200 13 40 chr3 50483785 50483860 -177040718 - MIR SINE MIR -87 175 103 523 233 98 77 chr3 50484028 50484611 -177039967 + L1MC5 LINE L1 7102 7696 -265 22 0 0 0 chr3 50484973 50484995 -177039583 + AT_rich Low_complexity Low_complexity 1 22 0 1274 288 92 9 chr3 50485421 50486095 -177038483 + L2 LINE L2 2530 3274 -39 1028 124 0 132 chr3 50486103 50486261 -177038317 + MER2 DNA MER2_type 1 118 -227 2061 100 10 58 chr3 50486261 50486572 -177038006 - AluSx SINE Alu -16 296 1 1028 124 0 132 chr3 50486572 50486655 -177037923 + MER2 DNA MER2_type 118 210 -135 2311 107 10 0 chr3 50487192 50487501 -177037077 + AluSx SINE Alu 1 312 0 191 357 24 0 chr3 50487655 50487739 -177036839 - MIR3 SINE MIR -5 203 118 275 315 45 0 chr3 50487874 50487985 -177036593 + MIR SINE MIR 30 145 -117 2125 97 17 0 chr3 50488199 50488499 -177036079 + AluSg SINE Alu 1 305 -5 180 0 0 0 chr3 50488693 50488713 -177035865 + (CCCG)n Simple_repeat Simple_repeat 4 23 0 702 27 18 2 chr3 50489093 50489314 -177035264 - AluY SINE Alu -17 294 30 465 239 201 0 chr3 50489596 50489730 -177034848 - MIR SINE MIR -88 174 14 1477 112 30 88 chr3 50489863 50490168 -177034410 - MER1B DNA MER1_type 0 339 53 2340 88 0 19 chr3 50490402 50490709 -177033869 - AluSg SINE Alu -9 301 1 229 161 113 65 chr3 50490981 50491043 -177033535 - AluJ/FLAM SINE Alu -237 65 1 2183 121 0 10 chr3 50491264 50491570 -177033008 - AluSg SINE Alu -7 303 1 2029 118 11 7 chr3 50491573 50491902 -177032676 - AluSq SINE Alu 0 330 1 2453 46 0 26 chr3 50491942 50492244 -177032334 - AluY SINE Alu -15 296 3 757 331 156 37 chr3 50492410 50493174 -177031404 - L2 LINE L2 -516 2798 1893 2085 128 13 3 chr3 50493174 50493478 -177031100 + AluSx SINE Alu 5 311 -1 757 331 156 37 chr3 50493478 50493684 -177030894 - L2 LINE L2 -1421 1893 1713 499 352 89 46 chr3 50493690 50494338 -177030240 - L2 LINE L2 -1890 1424 749 1969 112 32 7 chr3 50494534 50494839 -177029739 - AluSq SINE Alu 0 312 1 364 190 51 0 chr3 50494961 50495040 -177029538 - MLT1F LTR MaLR -459 83 1 601 279 57 63 chr3 50495099 50495137 -177029441 + L2 LINE L2 2213 2250 -1064 2066 128 0 3 chr3 50495137 50495427 -177029151 + AluSx SINE Alu 1 289 -23 601 279 57 63 chr3 50495427 50495493 -177029085 + L2 LINE L2 2250 2315 -999 2383 123 40 181 chr3 50495493 50496138 -177028440 - MLT2B3 LTR ERVL 0 554 1 601 279 57 63 chr3 50496138 50496347 -177028231 + L2 LINE L2 2315 2525 -789 21 0 0 0 chr3 50496479 50496500 -177028078 + AT_rich Low_complexity Low_complexity 1 21 0 2240 74 7 13 chr3 50496686 50496985 -177027593 + AluSp SINE Alu 1 297 -16 283 288 43 25 chr3 50497278 50497441 -177027137 + L1 LINE L1 4493 4658 -1488 373 259 135 42 chr3 50497503 50497696 -177026882 - L1MC4 LINE L1 -97 7945 7735 314 246 29 0 chr3 50497743 50497812 -177026766 + MER21B LTR ERV1 18 88 -775 2019 121 7 16 chr3 50497843 50498148 -177026430 - AluSx SINE Alu -10 302 1 1861 221 55 76 chr3 50498226 50498721 -177025857 + MER21B LTR ERV1 122 601 -262 1910 104 94 3 chr3 50498721 50499008 -177025570 + AluSq SINE Alu 1 313 0 1861 221 55 76 chr3 50499008 50499187 -177025391 + MER21B LTR ERV1 601 782 -81 309 281 0 0 chr3 50499255 50499351 -177025227 - L1M4 LINE L1 -348 5826 5731 404 247 40 3 chr3 50499607 50499743 -177024835 - L1MC4 LINE L1 -668 7140 7027 240 291 142 15 chr3 50499755 50499889 -177024689 + MLT1J LTR MaLR 316 466 -45 752 191 0 26 chr3 50499980 50500121 -177024457 + FAM SINE Alu 1 40 -145 821 130 8 30 chr3 50500121 50500252 -177024326 - AluJo/FLAM SINE Alu -174 128 1 21 82 0 0 chr3 50500262 50500311 -177024267 + AT_rich Low_complexity Low_complexity 1 49 0 1629 217 156 38 chr3 50501616 50501986 -177022592 + L1M4 LINE L1 2121 2446 -3700 1991 133 0 29 chr3 50501986 50502302 -177022276 + AluSx SINE Alu 1 307 -5 1629 217 156 38 chr3 50502302 50502558 -177022020 + L1M4 LINE L1 2446 2821 -3325 750 221 132 9 chr3 50502570 50502910 -177021668 + L1M4 LINE L1 3026 3407 -2739 2173 112 3 7 chr3 50502925 50503228 -177021350 + AluSx SINE Alu 1 302 -10 1730 155 46 26 chr3 50503575 50503878 -177020700 - AluJo SINE Alu -3 309 1 1876 148 0 32 chr3 50503907 50504217 -177020361 - AluSx SINE Alu 0 312 13 21 0 0 0 chr3 50504310 50504331 -177020247 + AT_rich Low_complexity Low_complexity 1 21 0 688 243 85 28 chr3 50504385 50504524 -177020054 + L2 LINE L2 2715 2845 -468 1637 170 101 3 chr3 50504524 50504841 -177019737 - MER7A DNA MER2_type 0 346 1 688 243 85 28 chr3 50504841 50504990 -177019588 + L2 LINE L2 2845 3078 -235 291 114 0 0 chr3 50506003 50506047 -177018531 + (CGGGGG)n Simple_repeat Simple_repeat 4 47 0 1042 240 75 42 chr3 50506761 50507240 -177017338 - L1M4 LINE L1 -755 5391 4897 2384 68 3 0 chr3 50507241 50507536 -177017042 - AluSx SINE Alu -16 296 1 184 214 196 18 chr3 50507884 50507940 -177016638 - L2 LINE L2 0 3272 3207 195 69 0 0 chr3 50507941 50507970 -177016608 + (CA)n Simple_repeat Simple_repeat 2 30 0 248 324 108 0 chr3 50508314 50508416 -177016162 - L2 LINE L2 -559 2755 2643 28 29 0 0 chr3 50508557 50508592 -177015986 + AT_rich Low_complexity Low_complexity 1 35 0 432 264 49 47 chr3 50510648 50510910 -177013668 + L1ME2 LINE L1 5678 5936 -234 2443 75 10 0 chr3 50511050 50511344 -177013234 - AluSg SINE Alu -13 297 1 283 278 135 8 chr3 50511699 50511825 -177012753 - L2 LINE L2 -41 3231 3090 292 312 96 16 chr3 50511832 50511957 -177012621 + MIR SINE MIR 58 192 -70 384 281 41 8 chr3 50512748 50512869 -177011709 + MIR3 SINE MIR 76 200 -8 * 484 300 114 45 chr3 50512856 50513146 -177011432 - L3 LINE CR1 -64 1513 1204 2316 60 42 3 chr3 50517021 50517306 -177007272 - AluY SINE Alu -15 296 1 23 54 0 0 chr3 50517865 50517902 -177006676 + AT_rich Low_complexity Low_complexity 1 37 0 1806 167 0 14 chr3 50519598 50519891 -177004687 + AluJo SINE Alu 1 289 -23 1080 287 174 6 chr3 50520513 50520568 -177004010 - L2 LINE L2 -91 3222 3178 2172 126 0 7 chr3 50520568 50520877 -177003701 + AluSx SINE Alu 1 307 -5 1080 287 174 6 chr3 50520877 50521358 -177003220 - L2 LINE L2 -135 3178 2593 306 284 199 14 chr3 50521361 50521502 -177003076 - L2 LINE L2 -666 2648 2482 21 36 0 0 chr3 50522113 50522141 -177002437 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 50523550 50523574 -177001004 + AT_rich Low_complexity Low_complexity 1 24 0 2305 120 0 0 chr3 50523906 50524215 -177000363 - AluSx SINE Alu -3 309 1 202 345 24 0 chr3 50525818 50525902 -176998676 - MIR3 SINE MIR -5 203 118 275 315 45 0 chr3 50526037 50526148 -176998430 + MIR SINE MIR 30 145 -117 2205 84 17 0 chr3 50526362 50526659 -176997919 + AluSg SINE Alu 1 302 -8 21 0 0 0 chr3 50526863 50526884 -176997694 + GC_rich Low_complexity Low_complexity 1 21 0 742 27 18 2 chr3 50527263 50527484 -176997094 - AluY SINE Alu -17 294 30 463 224 201 0 chr3 50527766 50527900 -176996678 - MIR SINE MIR -88 174 14 1599 112 30 88 chr3 50528033 50528338 -176996240 - MER1B DNA MER1_type 0 339 53 2018 117 3 20 chr3 50528572 50528871 -176995707 - AluSx SINE Alu -9 303 10 22 56 0 0 chr3 50528928 50528964 -176995614 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 50529031 50529052 -176995526 + AT_rich Low_complexity Low_complexity 1 21 0 1570 134 20 72 chr3 50529895 50530187 -176994391 + AluJo SINE Alu 1 277 -35 532 174 165 0 chr3 50530309 50530430 -176994148 - Charlie1 DNA MER1_type -1 2760 2620 * 886 223 30 20 chr3 50530411 50530608 -176993970 - Charlie1 DNA MER1_type -2519 242 44 21 0 0 0 chr3 50531549 50531570 -176993008 + AT_rich Low_complexity Low_complexity 1 21 0 2366 111 0 0 chr3 50531573 50531880 -176992698 + AluSx SINE Alu 1 307 -5 386 318 57 60 chr3 50532970 50533303 -176991275 + L2 LINE L2 2374 2705 -609 951 152 129 0 chr3 50533436 50533607 -176990971 - L1MB3 LINE L1 0 6183 5991 204 348 35 26 chr3 50533607 50533722 -176990856 + L2 LINE L2 2883 2998 -274 268 180 80 0 chr3 50533888 50533938 -176990640 + L2 LINE L2 3219 3272 0 728 218 50 28 chr3 50636321 50636500 -176888078 + MIR SINE MIR 12 194 -68 235 147 18 101 chr3 50636778 50636887 -176887691 - MER113 DNA MER1_type? -397 124 25 498 224 53 110 chr3 50637083 50637137 -176887441 - MER112 DNA MER1_type -13 247 191 2030 133 0 10 chr3 50637137 50637439 -176887139 + AluSx SINE Alu 11 309 -3 498 224 53 110 chr3 50637439 50637462 -176887116 - MER112 DNA MER1_type -69 191 168 1990 91 24 17 chr3 50637462 50637797 -176886781 - AluSq SINE Alu 0 337 1 498 224 53 110 chr3 50637797 50637961 -176886617 - MER112 DNA MER1_type -92 168 17 1552 247 36 44 chr3 50638519 50638559 -176886019 - LTR16C LTR ERVL -18 473 434 494 107 13 0 chr3 50638559 50638634 -176885944 - MER116 DNA Mariner 0 80 5 1552 247 36 44 chr3 50638634 50639070 -176885508 - LTR16C LTR ERVL -57 434 1 180 0 0 0 chr3 50639790 50639810 -176884768 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 1433 167 8 8 chr3 50639810 50640049 -176884529 - AluSx SINE Alu -32 280 42 1314 122 0 23 chr3 50640091 50640305 -176884273 + AluSg/x SINE Alu 104 312 0 428 196 350 7 chr3 50640431 50640574 -176884004 + MIR SINE MIR 34 225 -37 561 130 76 0 chr3 50640972 50641064 -176883514 + MER30 DNA MER1_type 132 230 0 215 171 0 0 chr3 50641072 50641107 -176883471 - MIR SINE MIR -64 144 110 300 233 78 43 chr3 50641199 50641315 -176883263 - L2 LINE L2 -3 3269 3150 188 297 189 18 chr3 50641381 50641492 -176883086 + MIR3 SINE MIR 14 143 -65 3421 176 59 32 chr3 50642523 50642640 -176881938 + L1MC4a LINE L1 6896 7008 -800 1806 168 3 0 chr3 50642640 50642944 -176881634 - AluJb SINE Alu -7 305 1 3421 176 59 32 chr3 50642944 50643625 -176880953 + L1MC4a LINE L1 7008 7715 -93 1983 162 45 8 chr3 50643625 50643646 -176880932 - MER57A LTR ERV1 0 403 384 1598 157 20 20 chr3 50643646 50643945 -176880633 + AluSx SINE Alu 1 299 -13 1983 162 45 8 chr3 50643945 50644282 -176880296 - MER57A LTR ERV1 -19 384 32 25 83 0 0 chr3 50644282 50644342 -176880236 + AT_rich Low_complexity Low_complexity 1 60 0 336 153 141 12 chr3 50644372 50644457 -176880121 + L1MD3 LINE L1 7884 7979 -16 448 252 49 21 chr3 50644771 50644914 -176879664 - MIR SINE MIR -102 160 14 191 278 0 0 chr3 50644954 50644990 -176879588 - L2 LINE L2 -11 3261 3226 203 319 131 42 chr3 50645117 50645308 -176879270 - L2 LINE L2 -18 3254 3047 347 270 46 31 chr3 50646146 50646286 -176878292 + MIR3 SINE MIR 63 206 -2 257 326 123 3 chr3 50646498 50646652 -176877926 - MIR SINE MIR -69 139 5 357 215 37 80 chr3 50647129 50647292 -176877286 + L1ME4a LINE L1 5965 6120 -1 734 249 77 0 chr3 50647648 50647829 -176876749 + MIR SINE MIR 14 208 -54 811 172 0 0 chr3 50647863 50647991 -176876587 - FLAM_A SINE Alu -5 128 1 808 246 77 5 chr3 50648019 50648214 -176876364 + MIR SINE MIR 5 213 -49 487 164 97 168 chr3 50648593 50648819 -176875759 + MER63A DNA MER1_type 1 210 0 391 278 107 37 chr3 50648961 50649148 -176875430 + MIR SINE MIR 54 253 -9 2249 112 0 0 chr3 50649279 50649584 -176874994 - AluSq SINE Alu -8 305 1 565 259 0 51 chr3 50651879 50652037 -176872541 - MIR SINE MIR -12 250 101 30 89 0 0 chr3 50652095 50652174 -176872404 + AT_rich Low_complexity Low_complexity 1 79 0 24783 86 6 13 chr3 50652270 50653810 -176870768 + L1PA7 LINE L1 625 2175 -4294 2314 70 0 10 chr3 50653810 50654109 -176870469 - AluY SINE Alu -15 296 1 24783 86 6 13 chr3 50654109 50658445 -176866133 + L1PA7 LINE L1 2175 6464 -5 244 267 158 15 chr3 50660138 50660411 -176864167 + L2 LINE L2 1869 2180 -1134 1054 122 0 122 chr3 50660434 50660593 -176863985 - AluSg/x SINE Alu -41 271 143 2194 103 0 7 chr3 50660593 50660903 -176863675 - AluSc SINE Alu -1 308 1 1054 122 0 122 chr3 50660903 50660956 -176863622 - AluSg/x SINE Alu -169 143 85 736 253 193 48 chr3 50660957 50661092 -176863486 + L2 LINE L2 2609 2723 -590 1725 169 41 123 chr3 50661092 50661307 -176863271 - LTR54 LTR ERV1 0 510 279 1742 167 3 0 chr3 50661307 50661601 -176862977 - AluJo SINE Alu -17 295 1 1725 169 41 123 chr3 50661601 50661940 -176862638 - LTR54 LTR ERV1 -231 279 1 736 253 193 48 chr3 50661940 50662441 -176862137 + L2 LINE L2 2723 3310 -3 353 266 156 17 chr3 50662987 50663160 -176861418 + MLT1K LTR MaLR 144 340 -248 535 255 68 12 chr3 50663205 50663366 -176861212 + MLT1K LTR MaLR 419 588 0 406 187 140 19 chr3 50663651 50663758 -176860820 + L2 LINE L2 3194 3313 0 195 42 0 0 chr3 50663764 50663788 -176860790 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 248 195 0 49 chr3 50664293 50664375 -176860203 + (TG)n Simple_repeat Simple_repeat 1 78 0 1684 141 69 0 chr3 50664437 50664714 -176859864 - AluSx SINE Alu -16 296 1 203 315 34 0 chr3 50666172 50666261 -176858317 - MIR SINE MIR -79 129 38 191 313 208 0 chr3 50666545 50666641 -176857937 - MIR SINE MIR -62 146 31 1674 115 123 0 chr3 50667529 50667790 -176856788 + AluSg SINE Alu 1 293 -17 1237 196 33 57 chr3 50667808 50668084 -176856494 + MER33 DNA MER1_type 1 269 -2316 909 190 0 0 chr3 50668084 50668247 -176856331 + FRAM SINE Alu 1 163 -3 1237 196 33 57 chr3 50668247 50668302 -176856276 + MER33 DNA MER1_type 269 324 0 748 208 36 6 chr3 50670758 50670926 -176853652 + MIR SINE MIR 89 261 -1 227 289 79 0 chr3 50671393 50671469 -176853109 - MIR3 SINE MIR 0 208 127 495 316 29 7 chr3 50672067 50672203 -176852375 - L2 LINE L2 0 3272 3134 14513 116 59 10 chr3 50672241 50673414 -176851164 + Tigger1 DNA MER2_type 15 1129 -1289 1713 169 31 0 chr3 50673414 50673704 -176850874 + AluJb SINE Alu 1 299 -13 14513 116 59 10 chr3 50673704 50674821 -176849757 + Tigger1 DNA MER2_type 1129 2418 0 353 333 76 7 chr3 50676453 50676597 -176847981 + MIR3 SINE MIR 45 198 -10 410 227 23 0 chr3 50676823 50676911 -176847667 - MER68 LTR ERV1 -12 550 461 1876 214 54 31 chr3 50677032 50677477 -176847101 - MER68 LTR ERV1 -106 456 2 437 335 75 0 chr3 50677478 50677639 -176846939 - MIR SINE MIR -88 174 2 261 271 43 0 chr3 50677651 50677721 -176846857 + L2 LINE L2 2922 2994 -319 2330 114 39 25 chr3 50677721 50678080 -176846498 + THE1B LTR MaLR 1 364 0 643 200 0 0 chr3 50678085 50678205 -176846373 - FLAM_A SINE Alu -2 140 21 240 329 72 12 chr3 50678230 50678397 -176846181 + L2 LINE L2 2996 3172 -141 1857 116 7 27 chr3 50678415 50678767 -176845811 + AluSx SINE Alu 3 312 0 682 215 84 42 chr3 50678779 50678935 -176845643 + MER63A DNA MER1_type 1 168 -1520 2312 109 95 14 chr3 50678935 50679283 -176845295 + MER83B LTR ERV1 3 378 0 682 215 84 42 chr3 50679283 50679317 -176845261 + MER63A DNA MER1_type 168 199 -11 578 225 36 0 chr3 50679320 50679431 -176845147 + L2 LINE L2 3199 3313 0 344 272 29 10 chr3 50679474 50679577 -176845001 - MIR SINE MIR -118 144 40 2267 130 48 16 chr3 50679989 50680365 -176844213 - MER61D LTR ERV1 0 501 114 2565 205 22 25 chr3 50680600 50680984 -176843594 - MER44D DNA MER2_type -1882 605 167 2907 90 76 2 chr3 50680984 50681417 -176843161 + MER4C LTR ERV1 1 465 0 2565 205 22 25 chr3 50681417 50681584 -176842994 - MER44D DNA MER2_type -2320 167 1 2928 202 161 31 chr3 50681973 50682420 -176842158 + L1M4 LINE L1 6 394 -5990 184 30 61 0 chr3 50682420 50682453 -176842125 + T-rich Low_complexity Low_complexity 1 35 0 1991 93 0 0 chr3 50682453 50682721 -176841857 - AluY SINE Alu -33 278 11 2928 202 161 31 chr3 50682721 50683098 -176841480 + L1M4 LINE L1 393 938 -5446 1441 68 16 0 chr3 50683098 50683288 -176841290 - MER75B DNA T2_type 0 243 51 1100 180 14 42 chr3 50683413 50683702 -176840876 + L1M4 LINE L1 935 1215 -5169 327 342 7 0 chr3 50684391 50684546 -176840032 + (TGG)n Simple_repeat Simple_repeat 1 156 0 1017 186 13 22 chr3 50685066 50685199 -176839379 + L1M4 LINE L1 1184 1316 -5068 4716 60 78 7 chr3 50685199 50685815 -176838763 - PABL_A LTR ERV1 0 660 1 1017 186 13 22 chr3 50685815 50685912 -176838666 + L1M4 LINE L1 1316 1412 -4972 2735 150 69 9 chr3 50685919 50686453 -176838125 + L1MB3 LINE L1 5471 6036 -147 1391 258 25 16 chr3 50686458 50686497 -176838081 + L1M4 LINE L1 2602 2639 -3743 4789 94 12 57 chr3 50686497 50686963 -176837615 - LTR8 LTR ERV1 0 691 267 2001 110 43 0 chr3 50686963 50687244 -176837334 - AluSq SINE Alu -20 293 1 4789 94 12 57 chr3 50687244 50687500 -176837078 - LTR8 LTR ERV1 -424 267 1 1391 258 25 16 chr3 50687500 50687944 -176836634 + L1M4 LINE L1 2639 3089 -3293 * 1969 219 35 8 chr3 50687911 50688423 -176836155 + L1M4 LINE L1 4378 4903 -1479 1582 152 70 84 chr3 50688430 50688748 -176835830 - MLT1A1 LTR MaLR 0 365 51 1776 109 68 0 chr3 50688748 50689013 -176835565 + AluSx SINE Alu 16 298 -14 1582 152 70 84 chr3 50689013 50689063 -176835515 - MLT1A1 LTR MaLR -314 51 2 354 176 0 0 chr3 50689063 50689131 -176835447 - MLT1A1-int LTR MaLR -13 1722 1655 808 159 0 0 chr3 50689154 50689280 -176835298 - FLAM_C SINE Alu -17 126 1 1040 109 73 12 chr3 50689281 50689446 -176835132 - MLT1A1-int LTR MaLR -68 1667 1493 2693 159 14 2 chr3 50689446 50690015 -176834563 - MER72 LTR ERV1 0 722 115 1981 187 15 36 chr3 50690047 50690438 -176834140 - L1M4 LINE L1 -6157 385 3 1989 251 46 51 chr3 50690462 50691181 -176833397 + MER50-int LTR ERV1 890 1733 -5472 * 6293 192 31 50 chr3 50691171 50692505 -176832073 + MER50-int LTR ERV1 1429 2737 -4468 1007 307 81 65 chr3 50692501 50693861 -176830717 + MER50-int LTR ERV1 3761 5142 -1949 * 2037 233 99 41 chr3 50693933 50694083 -176830495 + MER50 LTR ERV1 66 206 -528 231 61 0 0 chr3 50694083 50694116 -176830462 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1883 107 30 7 chr3 50694121 50694392 -176830186 - AluSx SINE Alu -35 277 1 2037 233 99 41 chr3 50694392 50694841 -176829737 + MER50 LTR ERV1 209 706 -28 288 0 0 0 chr3 50695027 50695059 -176829519 + (TG)n Simple_repeat Simple_repeat 2 33 0 3791 144 17 66 chr3 50695409 50696133 -176828445 - LTR8 LTR ERV1 -3 688 1 327 362 0 0 chr3 50696400 50696505 -176828073 + MER50-int LTR ERV1 6274 6378 -423 1507 171 68 0 chr3 50696755 50697007 -176827571 + REP3 LTR ERV 1 269 -293 1955 108 31 0 chr3 50697263 50697549 -176827029 - AluSx SINE Alu -17 295 1 290 167 150 0 chr3 50697551 50697611 -176826967 + REP3 LTR ERV 494 562 0 266 119 0 68 chr3 50697628 50697687 -176826891 + L1MDa LINE L1 2078 2132 -4408 438 323 26 7 chr3 50697714 50697869 -176826709 - L3 LINE CR1 -973 604 447 487 194 29 0 chr3 50698138 50698241 -176826337 + MER89 LTR ERV1 2 107 -452 1011 107 23 11 chr3 50698354 50698531 -176826047 + CT-rich Low_complexity Low_complexity 2 180 0 581 220 129 0 chr3 50698533 50698823 -176825755 - AluJb SINE Alu 0 470 164 228 86 0 0 chr3 50698833 50698868 -176825710 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1744 142 40 25 chr3 50698887 50699210 -176825368 + MER89 LTR ERV1 232 559 0 257 311 0 0 chr3 50699238 50699299 -176825279 + MIR SINE MIR 81 141 -67 3347 100 12 106 chr3 50699330 50699999 -176824579 + MER4B LTR ERV1 2 779 0 222 298 26 73 chr3 50700980 50701131 -176823447 - L2 LINE L2 -219 3053 2910 372 263 340 0 chr3 50701763 50701957 -176822621 + MIR SINE MIR 2 261 -1 6858 93 53 1 chr3 50703357 50704351 -176820227 - SVA Other Other -5 1381 336 1071 140 10 47 chr3 50704384 50704577 -176820001 - MER39B LTR ERV1 -467 186 1 3392 120 12 4 chr3 50704849 50705358 -176819220 + LTR10D LTR ERV1 1 513 0 1922 134 40 0 chr3 50705379 50705656 -176818922 - AluSx SINE Alu -24 288 1 4220 187 24 52 chr3 50705697 50706694 -176817884 + LTR5 LTR ERVK 1 969 0 263 327 85 18 chr3 50706926 50707091 -176817487 - MIR3 SINE MIR -17 191 16 2190 130 0 7 chr3 50707187 50707495 -176817083 - AluSx SINE Alu -6 306 1 22 0 0 0 chr3 50707607 50707629 -176816949 + AT_rich Low_complexity Low_complexity 1 22 0 2035 139 156 8 chr3 50707829 50708202 -176816376 - MSTA LTR MaLR 0 428 1 555 284 113 10 chr3 50710418 50710622 -176813956 + MIR SINE MIR 36 260 -2 288 0 0 0 chr3 50710696 50710728 -176813850 + (TG)n Simple_repeat Simple_repeat 2 33 0 2125 123 3 3 chr3 50711068 50711361 -176813217 - AluSx SINE Alu -16 296 4 436 313 71 19 chr3 50711483 50711694 -176812884 + MIR SINE MIR 33 254 -8 192 328 0 33 chr3 50711742 50711803 -176812775 + MIR SINE MIR 72 130 -78 292 303 197 31 chr3 50711988 50712730 -176811848 + L2 LINE L2 1543 2407 -907 221 270 48 0 chr3 50712861 50712924 -176811654 - L2 LINE L2 -282 3031 2966 2222 118 0 0 chr3 50713079 50713368 -176811210 - AluSx SINE Alu -23 289 1 21 0 0 0 chr3 50715239 50715260 -176809318 + AT_rich Low_complexity Low_complexity 1 21 0 2871 108 17 14 chr3 50715269 50715685 -176808893 - LTR8 LTR ERV1 0 691 275 318 26 0 0 chr3 50715686 50715725 -176808853 + (TCTCCC)n Simple_repeat Simple_repeat 2 40 0 5802 67 26 63 chr3 50715726 50716882 -176807696 + SVA Other Other 2 868 -520 905 76 14 38 chr3 50716900 50717110 -176807468 + SVA Other Other 590 794 -592 7145 58 5 40 chr3 50717125 50718114 -176806464 + SVA Other Other 433 1386 0 995 102 7 15 chr3 50718122 50718259 -176806319 - LTR8 LTR ERV1 -400 291 156 1455 201 33 10 chr3 50718260 50718559 -176806019 - AluSx SINE Alu -6 306 1 374 88 211 0 chr3 50718569 50718626 -176805952 - LTR8 LTR ERV1 -640 51 1 2116 114 9 22 chr3 50718848 50719164 -176805414 + AluSx SINE Alu 1 312 0 202 310 101 47 chr3 50720202 50720331 -176804247 + L2 LINE L2 3174 3309 -4 905 148 7 0 chr3 50720685 50720827 -176803751 + AluJb SINE Alu 135 277 -35 675 232 52 80 chr3 50720979 50721268 -176803310 - LTR68 LTR ERV1 -459 281 1 213 320 78 33 chr3 50721451 50721604 -176802974 - MIR3 SINE MIR -9 199 40 232 261 113 42 chr3 50722162 50722304 -176802274 - MER5A DNA MER1_type -3 186 35 953 216 111 66 chr3 50723677 50724181 -176800397 - PABL_B LTR ERV1 0 667 1 5087 112 29 17 chr3 50724491 50725260 -176799318 - MER4E LTR ERV1 -1 778 1 2413 85 7 0 chr3 50725472 50725779 -176798799 + AluY SINE Alu 2 310 -1 218 250 132 0 chr3 50726169 50726237 -176798341 + MIR SINE MIR 69 145 -117 3589 57 69 59 chr3 50726408 50726982 -176797596 - MER41A LTR ERV1 -11 543 3 620 120 0 11 chr3 50727432 50727524 -176797054 - MER39 LTR ERV1 0 707 617 1493 153 4 0 chr3 50727526 50727754 -176796824 + AluJb SINE Alu 84 312 0 397 129 0 14 chr3 50727798 50727868 -176796710 - AluSc SINE Alu -2 297 229 440 222 111 0 chr3 50728125 50728233 -176796345 - AluJb SINE Alu -191 121 2 395 245 52 3 chr3 50728715 50728871 -176795707 - L1MCa LINE L1 -4839 1768 1416 1817 194 70 38 chr3 50730120 50730277 -176794301 - MLT2B3 LTR ERVL -124 430 279 1747 159 3 30 chr3 50730277 50730578 -176794000 - AluJb SINE Alu -19 293 1 1817 194 70 38 chr3 50730578 50730837 -176793741 - MLT2B3 LTR ERVL -275 279 1 2380 207 9 25 chr3 50731103 50731909 -176792669 + L1ME LINE L1 4999 5793 -373 347 241 0 58 chr3 50731909 50731996 -176792582 + L1ME3A LINE L1 5535 5616 -554 255 170 21 0 chr3 50732001 50732048 -176792530 + L1ME3A LINE L1 5678 5725 -445 1256 204 82 41 chr3 50732048 50732415 -176792163 + LTR52 LTR ERVL 1 382 -39 772 217 117 41 chr3 50732459 50732749 -176791829 + L1ME3A LINE L1 5721 6032 -138 2571 52 3 7 chr3 50733033 50733341 -176791237 + AluY SINE Alu 1 307 -4 377 262 206 7 chr3 50733575 50733716 -176790862 - MIR SINE MIR -89 173 5 2416 93 0 6 chr3 50733733 50734045 -176790533 - AluSx SINE Alu -2 310 1 1463 173 126 74 chr3 50734050 50734496 -176790082 - Charlie4a DNA MER1_type -7 501 33 2310 85 19 0 chr3 50735041 50735357 -176789221 - SVA Other Other -1052 334 13 489 288 90 28 chr3 50735811 50736210 -176788368 - MLT1K LTR MaLR -8 580 139 436 144 40 6 chr3 50737118 50737292 -176787286 + (TA)n Simple_repeat Simple_repeat 1 180 0 550 90 57 13 chr3 50737306 50737523 -176787055 + (TA)n Simple_repeat Simple_repeat 1 226 0 24 0 0 0 chr3 50737523 50737547 -176787031 + AT_rich Low_complexity Low_complexity 1 24 0 678 115 35 0 chr3 50737554 50737728 -176786850 + (TA)n Simple_repeat Simple_repeat 1 180 0 2193 107 0 10 chr3 50737728 50738019 -176786559 - AluSx SINE Alu -24 288 1 23 0 0 0 chr3 50738460 50738483 -176786095 + AT_rich Low_complexity Low_complexity 1 23 0 185 324 18 113 chr3 50738568 50738790 -176785788 - L2 LINE L2 -33 3239 3039 655 279 81 14 chr3 50740517 50740739 -176783839 - MIR SINE MIR -9 253 17 2344 99 0 0 chr3 50741337 50741640 -176782938 - AluY SINE Alu -8 303 1 840 281 96 71 chr3 50742097 50742648 -176781930 + MLT1K LTR MaLR 2 566 -22 2301 113 3 0 chr3 50742802 50743103 -176781475 + AluSp SINE Alu 2 303 -10 2281 136 57 14 chr3 50743173 50743542 -176781036 - MER61D LTR ERV1 -3 498 114 13348 150 72 47 chr3 50743583 50745611 -176778967 - MER61D-int LTR ERV1 0 6940 4963 2013 136 3 3 chr3 50745611 50745905 -176778673 + AluSx SINE Alu 1 294 -18 13348 150 72 47 chr3 50745905 50746536 -176778042 - MER61D-int LTR ERV1 -1977 4963 4349 7884 18 23 0 chr3 50746536 50747458 -176777120 - L1PA3 LINE L1 -3 6152 5227 13348 150 72 47 chr3 50747458 50748332 -176776246 - MER61D-int LTR ERV1 -2591 4349 3498 2125 100 50 0 chr3 50748332 50748613 -176775965 - AluSq SINE Alu -18 295 1 13348 150 72 47 chr3 50748613 50748774 -176775804 - MER61D-int LTR ERV1 -3442 3498 2615 1557 140 0 9 chr3 50748766 50748995 -176775583 - MER61D-int LTR ERV1 -4979 2439 2213 * 1318 204 22 18 chr3 50748997 50749271 -176775307 - MER21B-int LTR ERV1 -642 4575 4301 1016 127 82 5 chr3 50749277 50749522 -176775056 - MER21B-int LTR ERV1 -1092 4125 695 1154 167 3 105 chr3 50749526 50749831 -176774747 - MER21B-int LTR ERV1 -4763 454 181 1149 221 109 17 chr3 50750252 50750546 -176774032 - MER21B LTR ERV1 -1 862 542 687 249 83 0 chr3 50751484 50751677 -176772901 + MER74B LTR ERVL 411 619 -3 406 257 134 56 chr3 50751699 50751935 -176772643 - L2 LINE L2 -150 3163 2900 279 0 0 0 chr3 50751935 50751966 -176772612 + (GA)n Simple_repeat Simple_repeat 2 32 0 406 257 134 56 chr3 50751966 50752013 -176772565 - L2 LINE L2 -413 2900 2858 2373 118 2 72 chr3 50752013 50752185 -176772393 + MLT1B LTR MaLR 6 188 -202 2344 90 7 0 chr3 50752185 50752485 -176772093 + AluSx SINE Alu 5 306 -6 2373 118 2 72 chr3 50752485 50752726 -176771852 + MLT1B LTR MaLR 188 390 0 331 328 8 8 chr3 50752728 50752853 -176771725 - L2 LINE L2 -467 2847 2723 361 252 42 91 chr3 50752916 50753059 -176771519 - MLT1J LTR MaLR -369 142 7 1332 199 143 19 chr3 50753719 50754091 -176770487 + LTR52 LTR ERVL 1 418 -3 2471 82 3 0 chr3 50754330 50754634 -176769944 - AluSx SINE Alu -7 305 1 2199 138 0 0 chr3 50754723 50755034 -176769544 - AluSx SINE Alu -1 311 1 2253 213 80 62 chr3 50755037 50755114 -176769464 - L1MDb LINE L1 -4633 2308 2234 1981 151 7 0 chr3 50755114 50755412 -176769166 + AluSx SINE Alu 1 300 -12 2253 213 80 62 chr3 50755412 50755532 -176769046 - L1MDb LINE L1 -4707 2234 2118 1611 198 10 32 chr3 50755532 50755846 -176768732 - AluJo SINE Alu -5 307 1 2253 213 80 62 chr3 50755846 50756652 -176767926 - L1MDb LINE L1 -4823 2118 1329 300 327 122 26 chr3 50756741 50756897 -176767681 - L1MDb LINE L1 -5617 1314 1144 2179 138 0 0 chr3 50756899 50757210 -176767368 - AluSx SINE Alu -1 311 1 355 356 64 44 chr3 50757551 50757849 -176766729 - L1MDb LINE L1 -6210 731 428 2090 248 54 38 chr3 50757856 50757959 -176766619 - L1MDb LINE L1 -4002 3120 3020 2286 107 0 19 chr3 50757959 50758268 -176766310 - AluSg SINE Alu -7 303 1 2090 248 54 38 chr3 50758268 50759085 -176765493 - L1MDb LINE L1 -4102 3020 2185 220 208 14 14 chr3 50759104 50759176 -176765402 + (CATATA)n Simple_repeat Simple_repeat 3 74 0 1405 248 65 15 chr3 50759205 50759617 -176764961 - L1MDb LINE L1 -5168 1255 823 722 262 60 40 chr3 50759911 50760281 -176764297 - L1MDb LINE L1 -6017 406 30 340 295 23 0 chr3 50763918 50764047 -176760531 + (TA)n Simple_repeat Simple_repeat 1 132 0 2316 251 98 12 chr3 50764047 50765296 -176759282 - L1ME3 LINE L1 -1 6161 4802 26 30 0 0 chr3 50767428 50767461 -176757117 + AT_rich Low_complexity Low_complexity 1 33 0 237 280 30 24 chr3 50767595 50767763 -176756815 - L1MC5 LINE L1 -897 7064 6896 30 45 0 0 chr3 50767812 50767856 -176756722 + AT_rich Low_complexity Low_complexity 1 44 0 1096 206 71 18 chr3 50767856 50768189 -176756389 - L1MB8 LINE L1 -6 6178 5828 1666 202 35 3 chr3 50768191 50768723 -176755855 - L1MB8 LINE L1 -492 5692 5146 1456 226 83 12 chr3 50768713 50769195 -176755383 - L1MB8 LINE L1 -1888 4258 3743 * 1490 196 18 4 chr3 50769718 50769993 -176754585 + AluJo SINE Alu 4 282 -30 1535 207 27 15 chr3 50770071 50770400 -176754178 + MER58B DNA MER1_type 9 341 0 1838 166 0 3 chr3 50771462 50771751 -176752827 + AluJo SINE Alu 1 288 -24 2178 206 28 71 chr3 50773327 50773906 -176750672 - MLT2B3 LTR ERVL 0 554 1 409 268 80 0 chr3 50774156 50774268 -176750310 - MER5C DNA MER1_type -200 124 4 2209 121 3 0 chr3 50774521 50774827 -176749751 - AluSq SINE Alu -6 307 1 319 292 58 8 chr3 50775335 50775455 -176749123 - MIR SINE MIR -7 255 130 2499 45 7 0 chr3 50776105 50776397 -176748181 - AluY SINE Alu -17 294 1 1934 153 3 23 chr3 50776774 50777082 -176747496 - AluJb SINE Alu -8 304 3 300 343 31 28 chr3 50777157 50777432 -176747146 - L1MC/D LINE L1 -458 5663 5483 1245 151 29 109 chr3 50777640 50777974 -176746604 + AluYb8 SINE Alu 1 309 0 1102 184 78 25 chr3 50778498 50778696 -176745882 - L1MC1 LINE L1 -18 6315 6096 1848 119 8 4 chr3 50778696 50778964 -176745614 - AluSx SINE Alu -43 269 1 1102 184 78 25 chr3 50778964 50779048 -176745530 - L1MC1 LINE L1 -237 6096 6018 2197 102 3 0 chr3 50779634 50779918 -176744660 - AluSx SINE Alu -27 285 1 2341 119 33 22 chr3 50780215 50780575 -176744003 - THE1B LTR MaLR 0 364 1 1023 193 66 103 chr3 50781087 50781466 -176743112 - MLT1A1 LTR MaLR 0 365 1 689 220 55 55 chr3 50781841 50782132 -176742446 - L1M4 LINE L1 -5392 1150 860 246 358 0 0 chr3 50782202 50782325 -176742253 - L1M4 LINE L1 -6406 136 14 1666 214 60 64 chr3 50782437 50782936 -176741642 + MLT1D LTR MaLR 1 497 -8 1692 224 75 126 chr3 50782974 50783256 -176741322 - L1M4 LINE L1 -1808 4338 4043 1173 51 0 13 chr3 50783256 50783412 -176741166 - L1PA6 LINE L1 0 6154 6001 1692 224 75 126 chr3 50783412 50783532 -176741046 - L1M4 LINE L1 -2103 4043 3918 1823 189 3 22 chr3 50783532 50783850 -176740728 - AluJb SINE Alu 0 312 1 1692 224 75 126 chr3 50783850 50785318 -176739260 - L1M4 LINE L1 -2228 3918 2562 365 291 61 99 chr3 50785892 50786236 -176738342 + L2 LINE L2 2941 3271 -1 249 341 12 0 chr3 50786291 50786373 -176738205 - L2 LINE L2 0 3272 3190 379 295 72 57 chr3 50787256 50787449 -176737129 - MIR SINE MIR -45 217 22 1738 150 17 24 chr3 50787567 50787861 -176736717 + AluJo SINE Alu 10 301 -11 976 234 151 21 chr3 50787994 50788366 -176736212 - L1ME3 LINE L1 -88 6074 5655 265 176 27 0 chr3 50788374 50788448 -176736130 + (TA)n Simple_repeat Simple_repeat 2 77 0 201 171 0 0 chr3 50788488 50788523 -176736055 + (TA)n Simple_repeat Simple_repeat 2 36 0 5756 137 70 1 chr3 50788656 50789647 -176734931 + Tigger1 DNA MER2_type 49 1107 -1311 2055 115 3 23 chr3 50789792 50790097 -176734481 - AluSg SINE Alu -11 299 1 473 250 102 14 chr3 50790386 50790528 -176734050 - MIR SINE MIR -61 147 18 2006 76 14 14 chr3 50790615 50790903 -176733675 - AluY SINE Alu -23 288 1 221 309 11 0 chr3 50790971 50791065 -176733513 + (TA)n Simple_repeat Simple_repeat 1 95 0 275 0 0 28 chr3 50791075 50791111 -176733467 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 25 51 0 0 chr3 50791185 50791224 -176733354 + AT_rich Low_complexity Low_complexity 1 39 0 1692 114 143 0 chr3 50791480 50791753 -176732825 + AluSx SINE Alu 1 312 0 1574 113 47 8 chr3 50792854 50793111 -176731467 + MER46B DNA MER2_type 94 235 -1 500 227 114 17 chr3 50793111 50793283 -176731295 + MER2 DNA MER2_type 156 344 -1 2589 164 119 12 chr3 50793317 50793914 -176730664 - L1MB7 LINE L1 -79 6105 5445 7217 210 46 30 chr3 50793914 50794486 -176730092 - L1MB7 LINE L1 -1287 4859 4298 330 26 0 0 chr3 50794486 50794525 -176730053 + (TG)n Simple_repeat Simple_repeat 2 40 0 7217 210 46 30 chr3 50794525 50796141 -176728437 - L1MB7 LINE L1 -1848 4298 2636 25 0 0 0 chr3 50796980 50797005 -176727573 + AT_rich Low_complexity Low_complexity 1 25 0 2365 109 0 3 chr3 50797005 50797318 -176727260 - AluSx SINE Alu 0 312 1 241 304 109 29 chr3 50798523 50798661 -176725917 - MIR3 SINE MIR -58 150 2 810 133 30 22 chr3 50799188 50799323 -176725255 - AluSq/x SINE Alu -176 136 1 222 150 0 0 chr3 50799938 50799978 -176724600 + (A)n Simple_repeat Simple_repeat 1 40 0 381 161 0 0 chr3 50800299 50800361 -176724217 + LTR41 LTR ERVL 82 143 -630 425 216 94 59 chr3 50800490 50800744 -176723834 + LTR41 LTR ERVL 493 755 -18 2089 138 3 25 chr3 50801115 50801435 -176723143 + AluSq SINE Alu 1 313 0 1322 133 9 33 chr3 50801612 50801769 -176722809 - AluJo SINE Alu -20 292 140 2101 149 0 0 chr3 50801769 50802070 -176722508 - AluJb SINE Alu -9 303 3 1322 133 9 33 chr3 50802070 50802123 -176722455 - AluJo SINE Alu -172 140 87 674 134 51 177 chr3 50802123 50802284 -176722294 - MER33 DNA MER1_type -2306 318 176 921 60 0 0 chr3 50802284 50802400 -176722178 - L1PB1 LINE L1 -1 6150 6035 674 134 51 177 chr3 50802400 50802548 -176722030 - MER33 DNA MER1_type -2448 176 11 1160 91 91 27 chr3 50802755 50802859 -176721719 + Tigger1 DNA MER2_type 80 176 -2242 2276 104 16 0 chr3 50802859 50803166 -176721412 - AluSp SINE Alu -1 312 1 1160 91 91 27 chr3 50803166 50803280 -176721298 + Tigger1 DNA MER2_type 176 312 -2106 806 219 0 44 chr3 50803280 50803463 -176721115 - AluJb SINE Alu -16 296 122 22 0 0 0 chr3 50803463 50803485 -176721093 + AT_rich Low_complexity Low_complexity 1 22 0 2334 94 0 3 chr3 50803485 50803783 -176720795 - AluSc SINE Alu -10 299 3 2276 105 3 0 chr3 50803788 50804092 -176720486 - AluSx SINE Alu -7 305 1 2329 117 33 22 chr3 50804389 50804749 -176719829 - THE1B LTR MaLR 0 364 1 1023 193 66 103 chr3 50805261 50805640 -176718938 - MLT1A1 LTR MaLR 0 365 1 689 220 55 55 chr3 50806015 50806306 -176718272 - L1M4 LINE L1 -5392 1150 860 246 358 0 0 chr3 50806376 50806499 -176718079 - L1M4 LINE L1 -6406 136 14 1658 215 60 64 chr3 50806613 50807111 -176717467 + MLT1D LTR MaLR 2 497 -8 815 209 80 150 chr3 50807149 50807431 -176717147 - L1M4 LINE L1 -1808 4338 4038 1199 51 0 13 chr3 50807431 50807587 -176716991 - L1PA6 LINE L1 0 6154 6001 815 209 80 150 chr3 50807587 50807658 -176716920 - L1M4 LINE L1 -2108 4038 3964 1794 186 3 22 chr3 50807658 50808024 -176716554 - AluJo SINE Alu 0 360 1 815 209 80 150 chr3 50808024 50808195 -176716383 - L1M4 LINE L1 -2182 3964 3805 2170 255 82 22 chr3 50808383 50809489 -176715089 - L1M4 LINE L1 -2412 3734 2562 262 305 55 93 chr3 50810063 50810407 -176714171 + L2 LINE L2 2941 3271 -1 217 337 12 0 chr3 50810462 50810545 -176714033 - L2 LINE L2 0 3313 3230 318 295 72 57 chr3 50811427 50811620 -176712958 - MIR SINE MIR -45 217 22 1739 143 24 31 chr3 50811738 50812032 -176712546 + AluJo SINE Alu 10 301 -11 232 164 33 33 chr3 50812057 50812118 -176712460 + L1ME LINE L1 5831 5891 -230 1112 231 151 21 chr3 50812165 50812537 -176712041 - L1ME3 LINE L1 -88 6074 5655 265 176 27 0 chr3 50812545 50812619 -176711959 + (TA)n Simple_repeat Simple_repeat 2 77 0 201 171 0 0 chr3 50812659 50812694 -176711884 + (TA)n Simple_repeat Simple_repeat 2 36 0 13035 129 88 18 chr3 50812827 50815041 -176709537 + Tigger1 DNA MER2_type 49 2418 0 4386 239 98 34 chr3 50815041 50815463 -176709115 - L1ME3 LINE L1 -608 5562 5168 1691 144 99 0 chr3 50815463 50815747 -176708831 - AluSx SINE Alu 0 312 1 4386 239 98 34 chr3 50815747 50816067 -176708511 - L1ME3 LINE L1 -1002 5168 4870 1670 179 0 13 chr3 50816067 50816368 -176708210 - AluJb SINE Alu -15 297 1 4386 239 98 34 chr3 50816368 50817720 -176706858 - L1ME3 LINE L1 -1300 4870 3325 1320 202 77 52 chr3 50817720 50818121 -176706457 - LTR52 LTR ERVL -3 418 8 32 43 0 0 chr3 50818562 50818608 -176705970 + AT_rich Low_complexity Low_complexity 1 46 0 1769 100 8 28 chr3 50818742 50818993 -176705585 - AluSg SINE Alu -15 295 50 363 230 7 118 chr3 50819256 50819408 -176705170 + MIR SINE MIR 117 251 -11 463 132 40 0 chr3 50819507 50819583 -176704995 - MER81 DNA DNA 0 114 36 333 177 16 0 chr3 50821081 50821143 -176703435 - MLT1B LTR MaLR 0 374 312 2049 125 144 6 chr3 50821147 50821500 -176703078 + MER83 LTR ERV1 47 448 0 527 161 4 12 chr3 50821500 50821598 -176702980 - MLT1B LTR MaLR -55 335 220 229 167 37 74 chr3 50822019 50822073 -176702505 - MLT1J LTR MaLR -323 188 137 2385 93 51 0 chr3 50822136 50822468 -176702110 + THE1A LTR MaLR 7 355 0 12073 89 4 1 chr3 50822469 50824043 -176700535 + THE1A-int LTR MaLR 2 1580 0 2197 112 75 31 chr3 50824043 50824392 -176700186 + THE1B LTR MaLR 1 364 0 211 342 26 9 chr3 50824773 50824887 -176699691 - MIR SINE MIR -63 145 30 191 235 0 78 chr3 50825511 50825562 -176699016 - MER5A DNA MER1_type -74 115 69 2924 16 0 0 chr3 50825937 50826251 -176698327 + AluYb8 SINE Alu 1 314 -4 1020 246 47 6 chr3 50826255 50826639 -176697939 - L2 LINE L2 -212 3101 2706 367 224 120 8 chr3 50826884 50827009 -176697569 - MER112 DNA MER1_type -55 205 67 278 305 125 8 chr3 50827286 50827414 -176697164 + MIR SINE MIR 74 216 -46 300 240 13 0 chr3 50830522 50830597 -176693981 + MIR3 SINE MIR 109 184 -24 259 274 0 0 chr3 50830743 50830816 -176693762 + MER5B DNA MER1_type 104 176 -2 283 270 209 9 chr3 50831528 50831758 -176692820 - L1ME4a LINE L1 -113 6008 5733 208 309 130 0 chr3 50832244 50832367 -176692211 + MIR3 SINE MIR 7 145 -63 285 29 0 0 chr3 50833435 50833469 -176691109 + (TC)n Simple_repeat Simple_repeat 1 34 0 260 225 0 11 chr3 50833469 50833558 -176691020 + (CA)n Simple_repeat Simple_repeat 2 89 0 3264 150 26 39 chr3 50833743 50834362 -176690216 - LTR36 LTR ERV1 0 611 1 210 71 0 0 chr3 50834551 50834579 -176689999 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 193 344 86 0 chr3 50834581 50834674 -176689904 - L2 LINE L2 -27 3245 3145 333 0 0 0 chr3 50834688 50834725 -176689853 + (TG)n Simple_repeat Simple_repeat 1 37 0 2923 205 55 17 chr3 50834925 50835613 -176688965 + L1ME1 LINE L1 5436 6149 -17 215 258 16 16 chr3 50835636 50835698 -176688880 - L2 LINE L2 -337 2976 2915 3948 48 30 4 chr3 50836174 50836674 -176687904 - LTR10D LTR ERV1 0 513 1 2345 112 0 0 chr3 50836849 50837154 -176687424 + AluSx SINE Alu 1 305 -7 1618 116 53 119 chr3 50838863 50839182 -176685396 + AluJo SINE Alu 1 298 -14 259 387 59 0 chr3 50839602 50839721 -176684857 - MIR SINE MIR -91 171 46 829 171 0 20 chr3 50839976 50840122 -176684456 - FLAM_C SINE Alu 0 143 1 273 327 12 6 chr3 50840173 50840335 -176684243 + (CA)n Simple_repeat Simple_repeat 1 163 0 207 236 149 62 chr3 50841126 50841287 -176683291 + MIR SINE MIR 88 262 0 3149 91 12 0 chr3 50841560 50841980 -176682598 - MER57B LTR ERV1 -9 425 1 1836 226 41 4 chr3 50841981 50842445 -176682133 + Charlie4a DNA MER1_type 28 508 0 23 33 0 0 chr3 50842543 50842573 -176682005 + AT_rich Low_complexity Low_complexity 1 30 0 199 150 0 25 chr3 50842573 50842613 -176681965 - L2 LINE L2 -31 3241 3203 1074 176 50 0 chr3 50843695 50843894 -176680684 + MER3 DNA MER1_type 1 209 0 893 232 102 36 chr3 50844041 50844375 -176680203 - Charlie8 DNA MER1_type -2142 275 2 228 349 12 0 chr3 50845072 50845158 -176679420 - MIR SINE MIR 0 262 176 287 262 115 0 chr3 50845200 50845322 -176679256 + L2 LINE L2 3178 3313 0 336 232 140 79 chr3 50845324 50845488 -176679090 - MIR SINE MIR -87 175 2 214 358 32 0 chr3 50846457 50846552 -176678026 - MIR SINE MIR -4 258 161 1148 265 25 12 chr3 50846554 50846879 -176677699 - LTR16C LTR ERVL 0 491 163 309 280 15 30 chr3 50847284 50847416 -176677162 - MIR SINE MIR -18 244 115 1706 206 40 42 chr3 50848465 50848941 -176675637 - MLT1D LTR MaLR 0 505 1 1523 148 72 10 chr3 50851349 50851654 -176672924 + MER33 DNA MER1_type 1 324 0 2278 106 7 0 chr3 50852023 50852325 -176672253 + AluSx SINE Alu 1 304 -8 460 228 20 0 chr3 50852432 50852533 -176672045 + Charlie7 DNA MER1_type 5 107 -2505 383 218 42 78 chr3 50852511 50852704 -176671874 + Charlie7 DNA MER1_type 2427 2612 0 * 243 88 0 0 chr3 50852782 50852816 -176671762 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 637 226 54 32 chr3 50853409 50853595 -176670983 - HAL1 LINE L1 -205 2302 2113 2518 173 33 38 chr3 50853596 50854076 -176670502 - MLT1D LTR MaLR 0 505 28 4197 152 24 22 chr3 50854099 50854817 -176669761 + MER44D DNA MER2_type 15 605 0 306 178 59 30 chr3 50854817 50854918 -176669660 - HAL1 LINE L1 -405 2102 1999 2048 228 57 32 chr3 50854923 50855488 -176669090 - HAL1 LINE L1 -542 1965 1387 264 293 140 25 chr3 50855489 50855646 -176668932 - LTR16C LTR ERVL 0 491 317 1650 272 93 13 chr3 50856081 50856610 -176667968 - HAL1 LINE L1 -1932 575 5 207 0 0 0 chr3 50856790 50856813 -176667765 + (CTTG)n Simple_repeat Simple_repeat 1 23 0 438 285 56 13 chr3 50856887 50857109 -176667469 + MIR SINE MIR 28 257 -5 517 257 149 17 chr3 50857834 50858009 -176666569 - MIR SINE MIR -30 232 35 455 292 31 6 chr3 50858313 50858474 -176666104 + MIR SINE MIR 20 184 -78 2508 87 0 0 chr3 50859912 50860211 -176664367 + AluSc SINE Alu 1 299 -10 186 191 71 0 chr3 50867125 50867167 -176657411 + MIR SINE MIR 218 262 0 801 269 58 18 chr3 50867730 50867953 -176656625 + MIR SINE MIR 31 262 0 288 0 0 0 chr3 50868566 50868598 -176655980 + (CA)n Simple_repeat Simple_repeat 2 33 0 246 298 136 31 chr3 50869488 50869746 -176654832 - MLT1H LTR MaLR -171 378 94 480 328 23 11 chr3 50870402 50870579 -176653999 - MIR SINE MIR -31 231 53 428 266 32 16 chr3 50871373 50871497 -176653081 + MIR SINE MIR 73 198 -64 275 308 154 6 chr3 50871611 50871793 -176652785 + L1MC4a LINE L1 5691 5899 -1909 1637 220 91 14 chr3 50871843 50872271 -176652307 + MLT1D LTR MaLR 45 505 0 713 236 20 30 chr3 50872844 50873043 -176651535 + MER74A LTR ERVL 1 197 -361 429 290 93 62 chr3 50873064 50873354 -176651224 + MER74A LTR ERVL 266 622 0 620 290 110 78 chr3 50873528 50873900 -176650678 - L2 LINE L2 -20 3252 2869 342 348 123 4 chr3 50873952 50874205 -176650373 - L2 LINE L2 -635 2679 2397 559 334 84 27 chr3 50875483 50876300 -176648278 + HAL1b LINE L1 42 933 -415 3224 103 32 47 chr3 50876596 50877238 -176647340 - MER4B LTR ERV1 0 779 1 252 258 90 45 chr3 50878293 50878382 -176646196 - MIR3 SINE MIR -6 202 110 2091 115 0 36 chr3 50878803 50879108 -176645470 - AluSx SINE Alu -18 294 1 877 153 51 6 chr3 50880135 50880292 -176644286 - MER5A DNA MER1_type 0 189 26 355 187 27 0 chr3 50880555 50880630 -176643948 - MLT1J LTR MaLR -356 155 79 1852 180 102 15 chr3 50882521 50882922 -176641656 - MER63B DNA MER1_type 0 436 1 244 281 0 0 chr3 50882978 50883042 -176641536 + GA-rich Low_complexity Low_complexity 2 65 0 546 293 89 0 chr3 50883492 50883683 -176640895 + Charlie8 DNA MER1_type 59 266 -2151 447 279 15 29 chr3 50883854 50883990 -176640588 + MIR SINE MIR 12 145 -117 435 194 58 0 chr3 50884121 50884224 -176640354 + MER81 DNA DNA 1 109 -5 260 196 238 30 chr3 50884227 50884442 -176640136 + LTR16C LTR ERVL 177 474 -17 227 298 0 0 chr3 50884494 50884551 -176640027 + MIR SINE MIR 191 247 -15 682 277 87 0 chr3 50884555 50884750 -176639828 - MIR SINE MIR -37 225 14 394 163 89 98 chr3 50885372 50885495 -176639083 - MLT1H LTR MaLR 0 549 428 1134 234 40 25 chr3 50885505 50885826 -176638752 + MLT1E1 LTR MaLR 329 654 0 306 271 104 10 chr3 50885826 50885922 -176638656 - MER96 DNA MER1_type? -17 158 54 2324 120 0 0 chr3 50887995 50888304 -176636274 - AluSx SINE Alu -3 309 1 1950 71 49 77 chr3 50888325 50888650 -176635928 - L1PA15 LINE L1 -6 6159 5844 283 318 129 23 chr3 50888650 50889513 -176635065 - L1M4 LINE L1 -815 5331 4378 222 62 0 0 chr3 50889516 50889548 -176635030 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 6746 16 8 0 chr3 50889548 50890344 -176634234 - L1PA3 LINE L1 -13 6142 5341 404 343 80 7 chr3 50890345 50890645 -176633933 - L1M4 LINE L1 -1764 4382 4061 249 150 0 0 chr3 50890680 50890720 -176633858 + Alu SINE Alu 1 40 -268 422 275 122 69 chr3 50890870 50890992 -176633586 - L1M4 LINE L1 -2052 4094 3980 1829 161 3 23 chr3 50890992 50891302 -176633276 + AluJo SINE Alu 1 304 -8 422 275 122 69 chr3 50891302 50891499 -176633079 - L1M4 LINE L1 -2166 3980 3758 561 233 27 34 chr3 50892345 50892491 -176632087 + MIR SINE MIR 96 240 -22 455 282 104 18 chr3 50893279 50893442 -176631136 - MIR SINE MIR -54 208 32 399 210 119 51 chr3 50893445 50893621 -176630957 + MER58B DNA MER1_type 3 190 -151 3002 112 54 82 chr3 50893621 50894230 -176630348 - LTR14B LTR ERVK 0 608 17 687 225 6 25 chr3 50894230 50894390 -176630188 + MER58B DNA MER1_type 185 341 0 2062 136 35 32 chr3 50894478 50894852 -176629726 + THE1C LTR MaLR 1 375 0 7639 123 11 37 chr3 50894852 50896108 -176628470 + THE1C-int LTR MaLR 1 1223 -357 270 269 0 0 chr3 50896160 50896212 -176628366 + L3 LINE CR1 622 673 -904 213 267 0 0 chr3 50896429 50896474 -176628104 + polypyrimidine Low_complexity Low_complexity 2 46 0 516 273 52 31 chr3 50896551 50896745 -176627833 + MLT1L LTR MaLR 418 615 0 466 394 108 12 chr3 50896764 50897190 -176627388 + L3 LINE CR1 696 1162 -415 1160 278 24 6 chr3 50897191 50897526 -176627052 - LTR16C LTR ERVL 0 491 151 262 258 0 0 chr3 50897710 50897772 -176626806 - LTR67 LTR ERVL -10 547 486 387 254 58 125 chr3 50897994 50898218 -176626360 + L1MC4 LINE L1 7830 8038 -4 5404 220 42 29 chr3 50898606 50900634 -176623944 - L1M4c LINE L1 -4178 2466 326 229 290 90 77 chr3 50902733 50902888 -176621690 - MIR3 SINE MIR -27 181 25 740 260 47 16 chr3 50903900 50904092 -176620486 + MIR SINE MIR 46 243 -19 924 310 87 20 chr3 50905944 50906450 -176618128 - L1MC/D LINE L1 -505 5786 5272 879 294 89 85 chr3 50906491 50907285 -176617293 - L1MC/D LINE L1 -914 5232 4475 2016 149 3 3 chr3 50907285 50907581 -176616997 - AluJb SINE Alu -16 296 1 879 294 89 85 chr3 50907581 50907751 -176616827 - L1MC/D LINE L1 -1671 4475 4307 535 291 63 44 chr3 50907790 50908394 -176616184 - L1MC/D LINE L1 -1977 4169 3523 1799 197 45 8 chr3 50908917 50909359 -176615219 + MER89 LTR ERV1 2 559 0 447 19 0 0 chr3 50909545 50909597 -176614981 + (TG)n Simple_repeat Simple_repeat 2 53 0 677 210 70 19 chr3 50909900 50910057 -176614521 - MIR SINE MIR -49 213 49 933 226 10 0 chr3 50910799 50910994 -176613584 + MER46C DNA MER2_type 139 335 -3 280 224 86 105 chr3 50911013 50911165 -176613413 - MIR SINE MIR -48 214 66 219 216 176 0 chr3 50911381 50911432 -176613146 - MIR SINE MIR -104 158 99 214 279 0 0 chr3 50911482 50911525 -176613053 - MIR SINE MIR -57 151 109 934 166 12 18 chr3 50912211 50912380 -176612198 - MER5A DNA MER1_type -10 179 12 677 223 71 95 chr3 50912706 50912877 -176611701 - MLT1C LTR MaLR -8 459 285 2265 102 3 0 chr3 50912877 50913183 -176611395 - AluSp SINE Alu 0 307 1 677 223 71 95 chr3 50913183 50913492 -176611086 - MLT1C LTR MaLR -182 285 1 41714 33 21 1 chr3 50913577 50919603 -176604975 + L1PA2 LINE L1 6 6155 0 203 56 56 0 chr3 50919622 50919658 -176604920 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 709 164 45 0 chr3 50919665 50919775 -176604803 + FLAM_A SINE Alu 1 115 -18 1514 185 30 7 chr3 50919825 50920128 -176604450 - MER63B DNA MER1_type -96 340 31 893 264 37 12 chr3 50920572 50920814 -176603764 - MIR SINE MIR -12 250 3 251 273 26 0 chr3 50922840 50922917 -176601661 + LTR67 LTR ERVL 97 175 -382 185 291 38 76 chr3 50923179 50923258 -176601320 + MER5A DNA MER1_type 16 91 -98 709 200 38 6 chr3 50923284 50923444 -176601134 - L1MD2 LINE L1 -1 6358 6194 3027 185 36 22 chr3 50923463 50924107 -176600471 - L1MD2 LINE L1 -239 6120 5468 405 138 0 0 chr3 50924259 50924324 -176600254 - MER53 DNA DNA -124 65 1 256 256 128 0 chr3 50924386 50924472 -176600106 + L2 LINE L2 3168 3264 -49 456 194 9 19 chr3 50925632 50925740 -176598838 + L1ME2 LINE L1 6031 6137 -27 236 286 8 56 chr3 50925918 50926044 -176598534 + L1ME4a LINE L1 5816 5935 -186 1584 198 167 21 chr3 50926374 50926853 -176597725 - L1ME3 LINE L1 -88 6074 5526 693 251 134 7 chr3 50926973 50927272 -176597306 + LTR16B LTR ERVL 3 339 -125 237 93 23 23 chr3 50930392 50930435 -176594143 - L2 LINE L2 -21 3251 3209 268 258 78 16 chr3 50930486 50930614 -176593964 + MLT1I LTR MaLR 2 137 -272 483 221 44 38 chr3 50931594 50931752 -176592826 - LTR16C LTR ERVL 0 491 333 400 306 0 40 chr3 50932143 50932267 -176592311 - MER5A DNA MER1_type -5 184 66 4041 180 95 35 chr3 50932267 50933164 -176591414 - L1MDa LINE L1 -4072 2468 1487 2495 63 0 13 chr3 50933164 50933466 -176591112 + AluY SINE Alu 1 298 -13 4041 180 95 35 chr3 50933466 50933700 -176590878 - L1MDa LINE L1 -5053 1487 1269 386 212 12 0 chr3 50933702 50933787 -176590791 - L1MDa LINE L1 -5484 1056 971 1624 275 33 52 chr3 50933787 50934111 -176590467 - L1MDa LINE L1 -5792 748 419 2222 117 27 38 chr3 50934111 50934478 -176590100 + THE1B LTR MaLR 1 363 -1 1624 275 33 52 chr3 50934478 50934901 -176589677 - L1MDa LINE L1 -6121 419 15 216 186 17 68 chr3 50934912 50934971 -176589607 + MER5A DNA MER1_type 131 186 -3 190 301 65 32 chr3 50935377 50935470 -176589108 + MIR SINE MIR 20 115 -147 1418 226 44 34 chr3 50935664 50936075 -176588503 + MLT1C LTR MaLR 53 467 0 182 270 0 79 chr3 50936179 50936242 -176588336 - MIR SINE MIR -101 107 50 284 216 272 17 chr3 50936654 50936790 -176587788 + MIR SINE MIR 30 191 -61 281 190 25 63 chr3 50936796 50936875 -176587703 + MER116 DNA Mariner 5 80 0 321 294 39 0 chr3 50937619 50937721 -176586857 + MLT1L LTR MaLR 505 610 -5 4674 168 70 60 chr3 50939863 50941042 -176583536 + L1MC4a LINE L1 6619 7808 0 26 30 0 0 chr3 50941044 50941077 -176583501 + AT_rich Low_complexity Low_complexity 1 33 0 1822 175 3 13 chr3 50941092 50941400 -176583178 - AluJo SINE Alu -7 305 1 257 237 53 53 chr3 50942362 50942438 -176582140 + MIR SINE MIR 6 81 -181 828 199 34 69 chr3 50942460 50942722 -176581856 + LTR16C LTR ERVL 224 476 -15 195 231 154 77 chr3 50943592 50943709 -176580869 - L3 LINE CR1 -129 1448 1323 448 245 109 14 chr3 50944411 50944558 -176580020 - MIR SINE MIR -88 174 14 594 299 34 15 chr3 50945141 50945345 -176579233 - MIR SINE MIR -3 259 52 848 144 147 162 chr3 50946135 50946531 -176578047 - MLT1B LTR MaLR 0 390 1 299 138 75 38 chr3 50946535 50946615 -176577963 - Charlie8 DNA MER1_type -2262 155 73 299 317 117 8 chr3 50948724 50948844 -176575734 - MIR SINE MIR -109 153 21 504 191 32 8 chr3 50948849 50948975 -176575603 - L1MC4 LINE L1 0 8042 7914 410 227 0 0 chr3 50948978 50949053 -176575525 - MER2 DNA MER2_type 0 345 271 1228 111 5 5 chr3 50949083 50949272 -176575306 - MER2 DNA MER2_type -135 210 22 1191 218 154 15 chr3 50949287 50949682 -176574896 - L1MC4 LINE L1 -132 7910 7461 246 319 76 8 chr3 50949756 50949875 -176574703 + L3 LINE CR1 1144 1270 -307 383 280 23 53 chr3 50950067 50950199 -176574379 + L3 LINE CR1 1337 1464 -113 669 225 31 17 chr3 50950272 50950439 -176574139 + MER5A DNA MER1_type 1 170 -8 638 284 74 22 chr3 50951369 50951598 -176572980 - MIR SINE MIR -14 248 8 317 274 115 51 chr3 50951923 50952080 -176572498 - MIR3 SINE MIR 0 208 42 279 273 0 26 chr3 50952551 50952628 -176571950 + MIR SINE MIR 24 98 -164 635 304 68 0 chr3 50953052 50953272 -176571306 - MIR SINE MIR -3 259 25 531 323 46 10 chr3 50953831 50954026 -176570552 - MIR SINE MIR -8 254 53 213 181 0 72 chr3 50954633 50954716 -176569862 + C-rich Low_complexity Low_complexity 2 78 0 1418 238 41 5 chr3 50955941 50956357 -176568221 + L1MD2 LINE L1 2311 2741 -3405 3142 195 146 27 chr3 50956363 50956511 -176568067 + L1MD2 LINE L1 5320 5449 -910 2298 101 0 7 chr3 50956511 50956818 -176567760 + AluSg SINE Alu 1 305 -5 3142 195 146 27 chr3 50956818 50957586 -176566992 + L1MD2 LINE L1 5449 6345 -14 344 270 56 62 chr3 50957758 50957936 -176566642 + L1ME4a LINE L1 5928 6104 -17 238 242 109 94 chr3 50958423 50958551 -176566027 + L2 LINE L2 2216 2345 -969 869 260 62 5 chr3 50958577 50958837 -176565741 + MLT1F1 LTR MaLR 1 320 -275 1969 155 9 81 chr3 50958837 50959257 -176565321 - MLT1B LTR MaLR 0 390 1 869 260 62 5 chr3 50959257 50959331 -176565247 + MLT1F1 LTR MaLR 320 388 -207 592 143 11 0 chr3 50959458 50959549 -176565029 + MSTA LTR MaLR 337 428 0 465 295 35 35 chr3 50959551 50959724 -176564854 + MLT1F1 LTR MaLR 410 582 -8 1872 226 87 43 chr3 50959741 50960258 -176564320 - MLT1F LTR MaLR -2 540 1 655 278 86 0 chr3 50960263 50960461 -176564117 - MIR SINE MIR 0 262 48 465 102 0 0 chr3 50961825 50961884 -176562694 + AluS SINE Alu 39 97 -215 1377 123 38 9 chr3 50961901 50962112 -176562466 + AluSx SINE Alu 61 277 -35 261 0 0 0 chr3 50962113 50962142 -176562436 + (TC)n Simple_repeat Simple_repeat 2 30 0 180 0 0 0 chr3 50962141 50962161 -176562417 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 297 0 0 0 chr3 50962160 50962193 -176562385 + (CA)n Simple_repeat Simple_repeat 2 34 0 408 267 189 44 chr3 50962236 50962596 -176561982 - MLT1J LTR MaLR 0 511 100 347 288 68 0 chr3 50962640 50962758 -176561820 + L1MC/D LINE L1 5545 5670 -2138 214 203 47 31 chr3 50963160 50963224 -176561354 - MIR3 SINE MIR -35 173 109 879 204 87 25 chr3 50966834 50967030 -176557548 - MER63A DNA MER1_type 0 210 3 537 287 75 5 chr3 50968441 50968636 -176555942 + MIR SINE MIR 19 224 -38 1520 96 5 0 chr3 50968674 50968873 -176555705 + L1PA7 LINE L1 5940 6139 -15 313 268 42 143 chr3 50969747 50970131 -176554447 + L2 LINE L2 2928 3272 0 364 311 134 8 chr3 50972950 50973069 -176551509 + MIR SINE MIR 20 153 -109 491 194 0 127 chr3 50973071 50973236 -176551342 + MER46C DNA MER2_type 2 145 -193 850 190 43 0 chr3 50973963 50974126 -176550452 - MER46A DNA MER2_type -66 170 1 381 127 0 0 chr3 50974126 50974189 -176550389 + L1MD2 LINE L1 6297 6359 0 333 0 0 0 chr3 50974212 50974249 -176550329 + (A)n Simple_repeat Simple_repeat 1 37 0 455 314 87 68 chr3 50974352 50974601 -176549977 + L2 LINE L2 2164 2426 -888 1664 181 86 12 chr3 50974601 50974938 -176549640 + MLT1A1 LTR MaLR 1 362 -3 455 314 87 68 chr3 50974938 50975112 -176549466 + L2 LINE L2 2426 2595 -719 254 267 10 79 chr3 50975949 50976050 -176548528 - L2 LINE L2 -2 3270 3177 1073 293 104 51 chr3 50976221 50976750 -176547828 + MLT1K LTR MaLR 2 558 -30 441 239 28 0 chr3 50977841 50977950 -176546628 - LTR67 LTR ERVL -15 542 431 217 104 0 42 chr3 50978544 50978592 -176545986 + (GA)n Simple_repeat Simple_repeat 1 46 0 2395 61 0 7 chr3 50978618 50978915 -176545663 + AluY SINE Alu 1 295 -16 222 37 0 0 chr3 50979638 50979665 -176544913 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 2403 56 0 0 chr3 50980171 50980488 -176544090 - AluY SINE Alu 0 317 1 495 255 117 27 chr3 50980678 50981058 -176543520 - LTR16C LTR ERVL -56 435 4 438 293 180 46 chr3 50981068 50981594 -176542984 - L2 LINE L2 -2 3311 2722 1949 162 15 3 chr3 50981614 50981941 -176542637 - L1MB3 LINE L1 -1 6182 5852 243 297 0 50 chr3 50982031 50982132 -176542446 - L2 LINE L2 -1008 2306 2211 622 242 102 49 chr3 50982275 50982519 -176542059 + MIR SINE MIR 2 258 -4 201 241 0 19 chr3 50982521 50982575 -176542003 + MIR SINE MIR 102 154 -108 670 183 111 26 chr3 50982581 50982734 -176541844 - MLT1H LTR MaLR -2 547 382 908 223 19 9 chr3 50983235 50983446 -176541132 + L1ME4a LINE L1 5517 5729 -392 2154 102 3 59 chr3 50983651 50983973 -176540605 + AluSx SINE Alu 1 304 -8 797 275 84 42 chr3 50984357 50985115 -176539463 + L1MDa LINE L1 1019 1828 -4712 29 60 0 0 chr3 50985128 50985178 -176539400 + AT_rich Low_complexity Low_complexity 1 50 0 1221 157 5 15 chr3 50985180 50985378 -176539200 + AluJo SINE Alu 87 282 -30 180 0 0 0 chr3 50985381 50985401 -176539177 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 23 33 0 0 chr3 50985407 50985437 -176539141 + AT_rich Low_complexity Low_complexity 1 30 0 1453 250 113 30 chr3 50985441 50986166 -176538412 + L1MDa LINE L1 1889 2673 -4048 279 184 46 58 chr3 50986233 50986320 -176538258 + L1MDa LINE L1 2754 2839 -3701 702 256 123 32 chr3 50986357 50986697 -176537881 + L1ME4a LINE L1 5737 6107 -14 296 364 0 8 chr3 50987587 50987705 -176536873 - MIR3 SINE MIR -23 185 69 726 312 36 83 chr3 50988166 50988551 -176536027 - L2 LINE L2 -9 3263 2897 288 0 0 0 chr3 50988556 50988588 -176535990 + (A)n Simple_repeat Simple_repeat 1 32 0 1378 263 48 63 chr3 50988681 50989270 -176535308 - MLT1E LTR MaLR 0 593 14 1627 167 7 47 chr3 50989724 50990024 -176534554 + AluJb SINE Alu 2 289 -23 1137 156 208 45 chr3 50991625 50991894 -176532684 - MSTD LTR MaLR 0 396 84 979 100 8 0 chr3 50991909 50992039 -176532539 + AluSg SINE Alu 1 131 -179 1591 90 5 5 chr3 50992154 50992365 -176532213 + AluSc SINE Alu 87 297 -12 414 215 13 0 chr3 50992365 50992444 -176532134 - MSTD LTR MaLR -348 80 1 303 271 21 31 chr3 50992446 50992542 -176532036 - MIR3 SINE MIR -51 157 63 413 277 48 36 chr3 50992568 50992734 -176531844 - MIR SINE MIR -55 207 40 187 280 60 71 chr3 50992870 50993038 -176531540 - L2 LINE L2 -384 2930 2765 646 213 148 0 chr3 50993044 50993204 -176531374 - MER5A DNA MER1_type 0 189 4 587 216 0 0 chr3 50993219 50993335 -176531243 + MER3 DNA MER1_type 52 167 -42 1732 155 55 34 chr3 50993345 50993725 -176530853 + MER3 DNA MER1_type 2236 2623 0 1187 236 126 51 chr3 50994669 50995315 -176529263 + L1MC5 LINE L1 6563 7256 -727 207 0 0 0 chr3 50995431 50995454 -176529124 + (TG)n Simple_repeat Simple_repeat 1 23 0 * 378 0 0 0 chr3 50995453 50995495 -176529083 + (GA)n Simple_repeat Simple_repeat 1 42 0 206 128 26 0 chr3 50996305 50996344 -176528234 + (TA)n Simple_repeat Simple_repeat 1 40 0 822 136 0 8 chr3 50996368 50996493 -176528085 + AluJb SINE Alu 1 124 -188 4372 85 33 3 chr3 50996596 50997171 -176527407 + L1PA10 LINE L1 5573 6164 -4 3285 115 14 16 chr3 50997181 50997677 -176526901 + L1PB2 LINE L1 5657 6151 0 683 281 112 17 chr3 50998682 50999031 -176525547 + L1ME4a LINE L1 5477 5858 -263 1336 95 11 16 chr3 50999062 50999252 -176525326 - AluSg/x SINE Alu 0 310 122 11249 122 4 3 chr3 50999684 51001372 -176523206 - L1P LINE L1 -867 5279 3590 2320 141 2 4 chr3 51001371 51001758 -176522820 - L1P5 LINE L1 -476 5675 5298 * 1277 156 0 45 chr3 51002001 51002245 -176522333 - L1 LINE L1 -752 5394 5162 268 241 13 13 chr3 51002484 51002563 -176522015 - L1MC5 LINE L1 -48 7913 7835 363 207 193 42 chr3 51002593 51002830 -176521748 - L1MC5 LINE L1 -196 7765 7507 334 123 0 18 chr3 51002837 51002894 -176521684 + L1 LINE L1 5143 5198 -948 2386 104 0 0 chr3 51003873 51004181 -176520397 - AluSc SINE Alu -1 308 1 1313 159 59 0 chr3 51004304 51004624 -176519954 - L1M4 LINE L1 -658 6018 5680 2219 197 23 23 chr3 51004645 51004858 -176519720 - L1M4 LINE L1 -4833 1709 1497 1838 196 38 32 chr3 51004858 51005230 -176519348 - MLT1A2 LTR MaLR 0 374 1 2219 197 23 23 chr3 51005230 51005529 -176519049 - L1M4 LINE L1 -5044 1498 1197 979 177 71 15 chr3 51005529 51005760 -176518818 - AluSg/x SINE Alu 0 317 76 4407 211 55 42 chr3 51005761 51006744 -176517834 - L1M4 LINE L1 -5334 1208 239 1845 129 66 51 chr3 51006744 51007077 -176517501 + MER44D DNA MER2_type 2 609 0 4407 211 55 42 chr3 51007077 51007218 -176517360 - L1M4 LINE L1 -6303 239 66 1925 151 40 0 chr3 51007218 51007516 -176517062 - AluY SINE Alu -1 310 1 4407 211 55 42 chr3 51007516 51007582 -176516996 - L1M4 LINE L1 -6476 66 2 498 248 59 115 chr3 51007592 51008063 -176516515 + MER65A LTR ERV1 1 445 0 2025 120 6 35 chr3 51008451 51008768 -176515810 + AluSx SINE Alu 1 308 -4 1695 146 8 0 chr3 51008789 51009036 -176515542 + AluSx SINE Alu 51 299 -13 1707 192 33 0 chr3 51009048 51009355 -176515223 + L1MDa LINE L1 27 343 -6197 423 250 0 0 chr3 51009357 51009437 -176515141 + LTR33 LTR ERVL 131 210 -311 * 722 263 86 16 chr3 51009434 51009677 -176514901 + LTR16A LTR ERVL 187 446 -4 514 206 0 0 chr3 51010221 51010313 -176514265 + MER103 DNA DNA 2 93 -73 1428 277 41 24 chr3 51010315 51010908 -176513670 - L2 LINE L2 0 3313 2720 205 71 24 48 chr3 51010988 51011030 -176513548 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 834 285 60 67 chr3 51011038 51012217 -176512361 + L1ME2 LINE L1 4327 5492 -672 198 0 0 0 chr3 51012217 51012239 -176512339 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 834 285 60 67 chr3 51012239 51012693 -176511885 + L1ME2 LINE L1 5492 5948 -216 263 262 36 0 chr3 51013588 51013672 -176510906 + GA-rich Low_complexity Low_complexity 4 90 0 2420 308 36 6 chr3 51013672 51014481 -176510097 + ERVL LTR ERVL 4167 4999 -765 1059 217 350 46 chr3 51014496 51014953 -176509625 + L1MDb LINE L1 20 615 -5794 462 264 7 49 chr3 51015168 51015239 -176509339 + LTR16C LTR ERVL 354 418 -73 1948 176 19 16 chr3 51015239 51015603 -176508975 + MLT1A1 LTR MaLR 1 365 0 462 264 7 49 chr3 51015603 51015675 -176508903 + LTR16C LTR ERVL 418 491 0 1607 225 77 42 chr3 51016135 51016245 -176508333 - MLT1G3 LTR MaLR 0 530 425 2207 125 21 26 chr3 51016245 51016622 -176507956 - THE1C LTR MaLR 0 375 1 1607 225 77 42 chr3 51016622 51017101 -176507477 - MLT1G3 LTR MaLR -105 425 1 189 0 0 0 chr3 51017553 51017574 -176507004 + (CAA)n Simple_repeat Simple_repeat 2 22 0 342 224 82 0 chr3 51017855 51017940 -176506638 + MIR SINE MIR 99 190 -72 522 323 85 14 chr3 51018256 51018479 -176506099 + LTR16C LTR ERVL 159 397 -94 286 227 72 21 chr3 51018961 51019058 -176505520 - MIR SINE MIR -57 151 50 956 266 169 28 chr3 51020780 51021141 -176503437 + LTR16A LTR ERVL 15 426 -24 199 313 42 6 chr3 51021556 51021722 -176502856 - L2 LINE L2 -214 3058 2887 402 209 0 12 chr3 51022455 51022541 -176502037 - MIR3 SINE MIR -15 193 109 929 214 135 35 chr3 51023439 51023728 -176500850 + MLT1J1 LTR MaLR 1 318 -128 273 253 42 21 chr3 51023791 51023886 -176500692 + MLT1J2 LTR MaLR 352 448 -2 292 275 33 0 chr3 51024020 51024111 -176500467 - MIR SINE MIR -97 165 72 485 304 94 28 chr3 51024241 51024603 -176499975 + LTR16C LTR ERVL 76 461 -30 281 207 138 26 chr3 51024613 51024729 -176499849 - MIR3 SINE MIR -36 172 44 405 281 163 4 chr3 51024890 51025136 -176499442 - L2 LINE L2 -3 3310 3026 21 0 0 0 chr3 51026194 51026215 -176498363 + AT_rich Low_complexity Low_complexity 1 21 0 1983 111 19 48 chr3 51026583 51026899 -176497679 - AluSg SINE Alu -3 307 1 24 0 0 0 chr3 51026928 51026952 -176497626 + AT_rich Low_complexity Low_complexity 1 24 0 583 190 17 9 chr3 51027052 51027168 -176497410 + MER103 DNA DNA 4 120 -46 2698 148 14 0 chr3 51027602 51028022 -176496556 - MSTB LTR MaLR 0 426 1 914 292 75 9 chr3 51028111 51028443 -176496135 + LTR16C LTR ERVL 38 391 -100 191 293 30 72 chr3 51029588 51029750 -176494828 - MIR SINE MIR -65 143 31 966 233 0 14 chr3 51029986 51030209 -176494369 - MIR SINE MIR -8 254 35 307 237 90 45 chr3 51031109 51031265 -176493313 + L1MC/D LINE L1 5350 5512 -609 778 233 40 6 chr3 51031465 51031641 -176492937 + L1M4 LINE L1 14 195 -6347 1311 167 0 44 chr3 51031647 51031874 -176492704 - AluJo SINE Alu -13 299 83 4739 224 53 9 chr3 51032014 51033381 -176491197 + L1M4 LINE L1 529 1988 -4658 2188 103 129 48 chr3 51033417 51033560 -176491018 + MSTA LTR MaLR 1 131 -297 7865 23 0 2 chr3 51033560 51034546 -176490032 + L1PA4 LINE L1 5171 6154 -1 2188 103 129 48 chr3 51034546 51034798 -176489780 + MSTA LTR MaLR 131 428 0 420 186 88 0 chr3 51035037 51035139 -176489439 + MIR SINE MIR 24 134 -128 26 30 0 0 chr3 51035560 51035593 -176488985 + AT_rich Low_complexity Low_complexity 1 33 0 436 296 71 27 chr3 51036476 51036714 -176487864 - MIR SINE MIR -9 253 3 230 320 10 29 chr3 51036722 51036825 -176487753 + L1MC/D LINE L1 5574 5674 -2134 244 228 114 51 chr3 51037322 51037559 -176487019 + HAL1 LINE L1 826 1077 -1430 279 0 0 0 chr3 51037573 51037604 -176486974 + (A)n Simple_repeat Simple_repeat 1 31 0 279 0 0 0 chr3 51038293 51038324 -176486254 + (A)n Simple_repeat Simple_repeat 1 31 0 235 235 90 59 chr3 51038335 51038590 -176485988 + L1MC4a LINE L1 971 1233 -4886 684 291 86 64 chr3 51038646 51038950 -176485628 + L1MC4a LINE L1 5281 5577 -2214 1687 153 52 4 chr3 51038950 51039218 -176485360 + AluSx SINE Alu 5 285 -27 189 0 0 0 chr3 51039221 51039242 -176485336 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 684 291 86 64 chr3 51039242 51039292 -176485286 + L1MC4a LINE L1 5578 5625 -2166 2039 159 0 0 chr3 51039292 51039593 -176484985 + AluJb SINE Alu 1 301 -11 684 291 86 64 chr3 51039593 51039823 -176484755 + L1MC4a LINE L1 5625 5883 -1908 308 247 110 76 chr3 51039851 51040232 -176484346 - HAL1 LINE L1 -1187 1320 927 1310 127 158 0 chr3 51040343 51040564 -176484014 + LTR8A LTR ERV1 1 256 -471 1486 102 5 5 chr3 51040574 51040779 -176483799 - MER30 DNA MER1_type -25 205 1 2367 126 112 16 chr3 51040779 51041216 -176483362 + LTR8A LTR ERV1 249 727 0 583 307 122 15 chr3 51041223 51041633 -176482945 + L1MC4a LINE L1 5465 5918 -1890 23 54 0 0 chr3 51041800 51041837 -176482741 + AT_rich Low_complexity Low_complexity 1 37 0 1114 230 36 13 chr3 51043058 51043367 -176481211 + MER33 DNA MER1_type 6 321 -3 747 183 0 0 chr3 51043435 51043555 -176481023 + FLAM_A SINE Alu 1 120 -13 569 200 28 78 chr3 51044460 51044640 -176479938 + LTR33 LTR ERVL 43 213 -308 263 268 174 40 chr3 51044784 51045008 -176479570 + L1MC4a LINE L1 5895 6148 -1660 725 51 10 0 chr3 51045127 51045225 -176479353 + (TTTC)n Simple_repeat Simple_repeat 2 100 0 1993 112 4 4 chr3 51045226 51045495 -176479083 - AluSg SINE Alu -41 269 1 256 278 90 30 chr3 51046978 51047111 -176477467 - MIR SINE MIR -93 169 29 664 204 48 18 chr3 51047850 51048017 -176476561 + MIR SINE MIR 59 230 -32 256 350 106 14 chr3 51048083 51048300 -176476278 - MIR SINE MIR -13 249 13 215 269 154 10 chr3 51048759 51048863 -176475715 - MIR SINE MIR -120 142 24 2156 122 0 13 chr3 51049015 51049326 -176475252 - AluSx SINE Alu -3 309 3 3373 145 35 7 chr3 51050223 51050802 -176473776 - L1MB3 LINE L1 -15 6168 5574 265 319 37 37 chr3 51050896 51051031 -176473547 + MER5A DNA MER1_type 18 152 -37 717 293 106 12 chr3 51051856 51052177 -176472401 - L1ME4a LINE L1 -251 5870 5520 734 211 170 0 chr3 51052203 51052374 -176472204 + MER20 DNA MER1_type 20 219 0 1386 264 117 11 chr3 51052847 51053309 -176471269 + MLT1J LTR MaLR 1 511 0 1073 200 24 0 chr3 51054894 51055099 -176469479 - MER63A DNA MER1_type 0 210 1 888 112 0 0 chr3 51055386 51055502 -176469076 + FLAM_C SINE Alu 1 116 -27 185 81 0 27 chr3 51055504 51055541 -176469037 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1639 177 40 4 chr3 51055790 51056067 -176468511 + AluJb SINE Alu 1 287 -25 21 0 0 0 chr3 51056072 51056093 -176468485 + AT_rich Low_complexity Low_complexity 1 21 0 3224 152 55 13 chr3 51056100 51056698 -176467880 + L1MB7 LINE L1 5562 6184 0 1110 197 94 0 chr3 51057022 51057256 -176467322 + L1M4 LINE L1 4021 4276 -1870 452 244 30 15 chr3 51058075 51058210 -176466368 - MER103 DNA DNA -1 165 29 227 186 0 0 chr3 51059557 51059600 -176464978 + CT-rich Low_complexity Low_complexity 4 46 0 314 289 20 54 chr3 51060497 51060646 -176463932 - MIR SINE MIR -55 207 64 240 86 0 0 chr3 51062747 51062782 -176461796 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1318 272 78 24 chr3 51063264 51063687 -176460891 - MLT1J LTR MaLR -29 482 37 302 284 0 0 chr3 51064193 51064281 -176460297 + (TA)n Simple_repeat Simple_repeat 2 89 0 2056 166 45 19 chr3 51064281 51064725 -176459853 + MER89 LTR ERV1 4 558 -1 860 138 8 0 chr3 51064820 51064943 -176459635 + FLAM_A SINE Alu 1 124 -9 49 66 0 0 chr3 51065595 51065686 -176458892 + AT_rich Low_complexity Low_complexity 1 91 0 21 0 0 0 chr3 51066774 51066795 -176457783 + AT_rich Low_complexity Low_complexity 1 21 0 1169 179 18 9 chr3 51066812 51067035 -176457543 + L1MCc LINE L1 25 249 -6174 410 262 63 85 chr3 51067043 51067360 -176457218 - L1ME3A LINE L1 -18 6152 5843 2515 154 29 7 chr3 51068939 51069354 -176455224 + MSTB LTR MaLR 1 424 -2 967 219 180 3 chr3 51069607 51069940 -176454638 + LTR16A1 LTR ERVL 66 457 0 24 32 0 0 chr3 51070126 51070157 -176454421 + AT_rich Low_complexity Low_complexity 1 31 0 213 208 111 0 chr3 51070742 51070814 -176453764 - L2 LINE L2 -3 3269 3190 220 324 45 57 chr3 51071259 51071435 -176453143 - L2 LINE L2 -211 3061 2888 314 283 0 67 chr3 51071943 51072063 -176452515 + MIR SINE MIR 25 136 -72 533 270 132 48 chr3 51072159 51072448 -176452130 + MLT1K LTR MaLR 185 497 -91 7011 96 9 2 chr3 51072949 51073911 -176450667 - LTR5 LTR ERVK 0 969 1 609 257 130 0 chr3 51074115 51074324 -176450254 + MIR SINE MIR 8 242 -20 230 333 65 32 chr3 51075118 51075241 -176449337 + L2 LINE L2 2618 2744 -570 648 136 66 206 chr3 51075268 51075511 -176449067 + MER3 DNA MER1_type 1 209 0 272 266 25 13 chr3 51075623 51075702 -176448876 + L2 LINE L2 2890 2969 -303 722 293 67 83 chr3 51076926 51077298 -176447280 + L2 LINE L2 2906 3271 -1 514 169 8 32 chr3 51077316 51077440 -176447138 + GA-rich Low_complexity Low_complexity 2 122 0 1329 180 16 0 chr3 51077870 51078125 -176446453 + L1MD3 LINE L1 7737 7995 0 2198 113 0 0 chr3 51078129 51078439 -176446139 + AluSg SINE Alu 1 310 0 296 211 147 0 chr3 51078485 51078580 -176445998 + L1ME4a LINE L1 6009 6117 -4 24 0 0 0 chr3 51078581 51078605 -176445973 + AT_rich Low_complexity Low_complexity 1 24 0 392 175 308 0 chr3 51080020 51080140 -176444438 + MER5A DNA MER1_type 26 182 -7 519 272 38 38 chr3 51080160 51080318 -176444260 + MER5A DNA MER1_type 6 163 -26 476 298 82 43 chr3 51080692 51080997 -176443581 - L1MC4a LINE L1 -1913 5895 5579 320 250 122 70 chr3 51081155 51081327 -176443251 - MIR SINE MIR -46 216 36 439 311 0 8 chr3 51082499 51082618 -176441960 - L2 LINE L2 -1 3312 3195 242 281 100 107 chr3 51083855 51084165 -176440413 - L2 LINE L2 -2 3270 2963 21 0 0 0 chr3 51084516 51084537 -176440041 + AT_rich Low_complexity Low_complexity 1 21 0 338 265 40 93 chr3 51084910 51085061 -176439517 - L2 LINE L2 -1 3312 3170 1864 133 26 13 chr3 51085080 51085388 -176439190 + AluSx SINE Alu 1 312 0 413 245 13 13 chr3 51085784 51085939 -176438639 - L1MC5 LINE L1 -137 7824 7670 21 0 0 0 chr3 51085984 51086005 -176438573 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 51086038 51086061 -176438517 + AT_rich Low_complexity Low_complexity 1 23 0 1845 152 13 3 chr3 51086066 51086368 -176438210 - AluJb SINE Alu -7 305 1 1398 158 53 49 chr3 51086378 51086519 -176438059 - AluJb SINE Alu -24 288 149 1868 138 7 10 chr3 51086519 51086810 -176437768 - AluSx SINE Alu -14 298 9 1398 158 53 49 chr3 51086810 51086952 -176437626 - AluJb SINE Alu -163 149 4 454 70 84 0 chr3 51086952 51087023 -176437555 - L1PA16 LINE L1 -2 6164 6088 2114 107 3 0 chr3 51087547 51087838 -176436740 - AluSx SINE Alu -17 295 4 272 279 29 67 chr3 51088030 51088134 -176436444 + MIR SINE MIR 112 211 -51 249 281 10 62 chr3 51088548 51088644 -176435934 + LTR67 LTR ERVL 460 550 -7 255 244 39 51 chr3 51088994 51089072 -176435506 - MIR3 SINE MIR -21 187 111 411 260 48 0 chr3 51090914 51091018 -176433560 + MIR SINE MIR 78 186 -76 225 226 0 19 chr3 51091173 51091226 -176433352 - L2 LINE L2 0 3313 3262 544 287 109 9 chr3 51091336 51091566 -176433012 - MIR SINE MIR -2 260 8 1153 120 38 5 chr3 51091751 51091935 -176432643 - L1M2 LINE L1 -756 5535 5346 227 39 118 0 chr3 51091938 51091989 -176432589 + GA-rich Low_complexity Low_complexity 2 58 0 3625 151 25 15 chr3 51091994 51092662 -176431916 - L1M2 LINE L1 -1820 4326 3652 579 259 73 38 chr3 51093031 51093348 -176431230 + L1ME4a LINE L1 5599 5926 -195 2102 255 146 18 chr3 51094564 51095620 -176428958 + L2 LINE L2 2129 3313 0 2293 124 3 29 chr3 51095910 51096256 -176428322 + MER1B DNA MER1_type 1 337 0 206 281 0 18 chr3 51097101 51097158 -176427420 + GA-rich Low_complexity Low_complexity 4 59 0 290 265 69 10 chr3 51097901 51098003 -176426575 - MIR SINE MIR -108 154 47 1896 113 0 0 chr3 51098294 51098559 -176426019 - AluSq SINE Alu -48 265 1 383 199 127 72 chr3 51098581 51098762 -176425816 + LTR33 LTR ERVL 329 519 -2 2374 182 34 62 chr3 51102205 51102819 -176421759 + L1ME1 LINE L1 5565 6161 -5 1364 295 82 32 chr3 51102848 51103411 -176421167 + L1MEc LINE L1 50 640 -5756 607 232 50 50 chr3 51103727 51103961 -176420617 + LTR45 LTR ERV1 366 525 0 1445 234 35 10 chr3 51103961 51104363 -176420215 + L1MEc LINE L1 657 1068 -5328 425 326 61 0 chr3 51104563 51104695 -176419883 + L2 LINE L2 3133 3272 0 443 354 0 0 chr3 51104882 51105009 -176419569 + MIR3 SINE MIR 75 201 -7 1680 230 89 59 chr3 51105012 51105470 -176419108 + MLT1F LTR MaLR 1 479 -63 2097 126 7 0 chr3 51105470 51105780 -176418798 - AluSx SINE Alu 0 312 1 1680 230 89 59 chr3 51105780 51105847 -176418731 + MLT1F LTR MaLR 479 542 0 2035 138 3 3 chr3 51107308 51107619 -176416959 + AluSx SINE Alu 1 311 -1 227 239 0 0 chr3 51107661 51107707 -176416871 + (TGGG)n Simple_repeat Simple_repeat 1 46 0 4583 185 90 17 chr3 51108469 51108759 -176415819 - MER45B DNA AcHobo -541 1040 773 2257 84 7 3 chr3 51108759 51109057 -176415521 - AluSc SINE Alu -10 299 1 4583 185 90 17 chr3 51109057 51109701 -176414877 - MER45B DNA AcHobo -808 773 38 856 277 19 4 chr3 51109734 51109990 -176414588 - MIR SINE MIR -1 261 2 1524 120 76 73 chr3 51110198 51110499 -176414079 + AluJb SINE Alu 1 302 -10 751 167 0 0 chr3 51113030 51113156 -176411422 + L1MA5 LINE L1 6175 6300 0 1962 120 3 27 chr3 51113710 51114002 -176410576 + AluSq SINE Alu 1 285 -28 309 51 0 0 chr3 51114002 51114041 -176410537 + (CA)n Simple_repeat Simple_repeat 2 40 0 370 259 43 14 chr3 51114067 51114206 -176410372 - LTR16C LTR ERVL -10 481 339 280 286 0 14 chr3 51114563 51114633 -176409945 - L2 LINE L2 0 3272 3204 858 204 5 21 chr3 51115387 51115578 -176409000 - MER53 DNA DNA -1 188 1 589 255 163 43 chr3 51116355 51116747 -176407831 - L2 LINE L2 -8 3305 2867 776 186 174 0 chr3 51117322 51117483 -176407095 + MER5A DNA MER1_type 1 189 0 606 298 90 18 chr3 51118636 51118915 -176405663 + L1ME4a LINE L1 5387 5685 -436 441 269 34 6 chr3 51118991 51119166 -176405412 + L1ME4a LINE L1 5689 5868 -253 572 255 138 54 chr3 51119834 51120167 -176404411 - MLT1H LTR MaLR -188 361 1 2201 154 62 5 chr3 51121312 51121715 -176402863 + L1MC3 LINE L1 7360 7785 0 800 286 32 9 chr3 51121726 51121946 -176402632 + MIR SINE MIR 16 240 -22 235 211 0 35 chr3 51122847 51122904 -176401674 - MIR SINE MIR -89 173 119 377 236 169 22 chr3 51125053 51125231 -176399347 - L1MC4a LINE L1 -1634 6174 5971 430 308 169 20 chr3 51125736 51126038 -176398540 - L2 LINE L2 -9 3263 2917 269 231 176 19 chr3 51126399 51126507 -176398071 - LTR33 LTR ERVL -3 518 394 333 234 239 11 chr3 51126606 51126790 -176397788 - LTR33 LTR ERVL -272 249 24 203 229 0 33 chr3 51126865 51126926 -176397652 + T-rich Low_complexity Low_complexity 1 59 0 193 277 31 15 chr3 51127293 51127358 -176397220 + MIR SINE MIR 41 106 -102 237 322 58 11 chr3 51127886 51127973 -176396605 - L2 LINE L2 0 3313 3223 251 279 13 13 chr3 51127995 51128074 -176396504 + L1ME3A LINE L1 5721 5799 -2009 * 1252 231 82 84 chr3 51128073 51128797 -176395781 + L1MC5 LINE L1 6530 7255 -733 726 257 17 17 chr3 51128898 51129135 -176395443 + L1MC5 LINE L1 7261 7497 -464 1145 107 96 15 chr3 51129148 51129345 -176395233 - L1MA9 LINE L1 -31 6281 6069 1690 136 38 25 chr3 51129391 51129705 -176394873 - MER93b LTR ERV1 0 373 2 4231 138 22 20 chr3 51129715 51130328 -176394250 - L1MA9 LINE L1 -330 5982 5363 2606 20 7 3 chr3 51130328 51130625 -176393953 - AluY SINE Alu -13 298 1 4231 138 22 20 chr3 51130625 51130772 -176393806 - L1MA9 LINE L1 -949 5363 5218 727 211 43 11 chr3 51131617 51131802 -176392776 + L1ME3A LINE L1 5875 6065 -105 329 251 47 110 chr3 51131802 51132057 -176392521 + MLT1J LTR MaLR 5 243 -268 224 229 86 57 chr3 51132150 51132220 -176392358 - L2 LINE L2 -1 3271 3200 2615 106 77 20 chr3 51132235 51132640 -176391938 - MSTA LTR MaLR 0 428 1 418 252 58 58 chr3 51132685 51132824 -176391754 - Charlie8 DNA MER1_type -2151 266 128 2149 182 83 15 chr3 51132896 51133353 -176391225 - MLT1E2 LTR MaLR -2 624 137 11185 146 82 50 chr3 51133372 51134904 -176389674 + Tigger1 DNA MER2_type 1 1483 -935 1669 164 7 11 chr3 51134904 51135184 -176389394 + AluJb SINE Alu 1 279 -33 297 0 0 0 chr3 51135186 51135219 -176389359 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 11185 146 82 50 chr3 51135219 51136025 -176388553 + Tigger1 DNA MER2_type 1483 2416 -2 539 124 142 35 chr3 51136035 51136148 -176388430 - MLT1E2 LTR MaLR -529 125 1 803 180 8 0 chr3 51136190 51136318 -176388260 - AluJb SINE Alu -182 130 2 584 245 60 67 chr3 51136816 51137241 -176387337 + L1MB7 LINE L1 716 1141 -5405 2075 114 30 3 chr3 51137241 51137538 -176387040 + AluSq SINE Alu 1 305 -8 3713 207 45 26 chr3 51137546 51139047 -176385531 + L1MB7 LINE L1 5009 6540 -142 1648 166 3 10 chr3 51139047 51139336 -176385242 - AluJo SINE Alu -21 291 5 3713 207 45 26 chr3 51139336 51139473 -176385105 + L1MB7 LINE L1 6540 6673 -9 341 254 42 34 chr3 51139485 51139603 -176384975 - Charlie8 DNA MER1_type -2296 121 3 380 299 88 83 chr3 51139604 51140015 -176384563 - L2 LINE L2 -51 3221 2809 454 252 53 76 chr3 51140158 51140234 -176384344 - MIR SINE MIR -10 252 176 970 166 101 0 chr3 51140234 51140403 -176384175 - MER5A DNA MER1_type -3 186 1 454 252 53 76 chr3 51140403 51140560 -176384018 - MIR SINE MIR -86 176 30 378 0 0 0 chr3 51140636 51140678 -176383900 + (CA)n Simple_repeat Simple_repeat 1 42 0 23 54 0 0 chr3 51140933 51140970 -176383608 + AT_rich Low_complexity Low_complexity 1 37 0 252 184 0 0 chr3 51142841 51142890 -176381688 + (TATATG)n Simple_repeat Simple_repeat 4 52 0 25 83 0 0 chr3 51143177 51143237 -176381341 + GC_rich Low_complexity Low_complexity 1 60 0 380 300 177 53 chr3 51143238 51143870 -176380708 - L1M2 LINE L1 -5654 1195 529 193 237 119 0 chr3 51144818 51144877 -176379701 - MIR SINE MIR -115 147 82 228 340 64 35 chr3 51146842 51146983 -176377595 + L2 LINE L2 3119 3263 -9 230 310 84 53 chr3 51147199 51147483 -176377095 + L2 LINE L2 2453 2745 -569 257 326 68 68 chr3 51147519 51147844 -176376734 - L2 LINE L2 0 3313 2989 219 255 143 41 chr3 51148325 51148423 -176376155 - MIR SINE MIR -59 203 96 195 219 19 89 chr3 51148624 51148711 -176375867 + MIR SINE MIR 63 147 -63 671 87 11 0 chr3 51149598 51149690 -176374888 - L1PA8 LINE L1 -4 6168 6076 856 196 11 22 chr3 51149832 51150011 -176374567 - AluJb SINE Alu 0 312 136 1940 153 0 17 chr3 51150371 51150672 -176373906 + AluSx SINE Alu 1 296 -16 648 254 145 29 chr3 51150699 51150978 -176373600 - L1ME4a LINE L1 -214 5907 5577 1661 146 89 54 chr3 51150978 51151327 -176373251 - MER46B DNA MER2_type 0 236 1 648 254 145 29 chr3 51151327 51151398 -176373180 - L1ME4a LINE L1 -544 5577 5516 2210 112 3 0 chr3 51152482 51152777 -176371801 - AluSx SINE Alu -16 296 1 267 31 0 0 chr3 51153155 51153187 -176371391 + (TA)n Simple_repeat Simple_repeat 2 33 0 227 287 78 0 chr3 51153854 51153969 -176370609 + L1ME4a LINE L1 5803 5926 -195 289 159 45 57 chr3 51154024 51154112 -176370466 + L1ME4a LINE L1 6019 6105 -16 805 283 37 8 chr3 51154788 51155032 -176369546 - MIR SINE MIR -5 257 7 2270 91 0 0 chr3 51155930 51156215 -176368363 - AluSg SINE Alu -25 285 1 658 241 135 30 chr3 51157634 51157871 -176366707 + MIR SINE MIR 1 262 0 902 147 0 0 chr3 51158223 51158352 -176366226 + FLAM_C SINE Alu 1 129 -4 21 0 0 0 chr3 51158358 51158379 -176366199 + AT_rich Low_complexity Low_complexity 1 21 0 243 292 0 15 chr3 51159018 51159083 -176365495 - L2 LINE L2 -19 3294 3231 210 234 109 0 chr3 51160960 51161024 -176363554 + MIR SINE MIR 71 141 -121 271 271 84 9 chr3 51161034 51161141 -176363437 - MIR SINE MIR -37 225 111 379 297 159 82 chr3 51161727 51162069 -176362509 + L1ME3A LINE L1 5352 5714 -450 235 223 7 101 chr3 51162138 51162220 -176362358 + L1ME3A LINE L1 5843 5908 -262 2368 72 0 10 chr3 51162220 51162524 -176362054 - AluY SINE Alu -10 301 1 235 223 7 101 chr3 51162524 51162580 -176361998 + L1ME3A LINE L1 5908 5968 -202 389 297 115 77 chr3 51163176 51164045 -176360533 - L1MDa LINE L1 -2898 3642 2741 13015 103 28 46 chr3 51164074 51164425 -176360153 + Tigger1 DNA MER2_type 2 358 -2060 228 35 0 0 chr3 51164425 51164454 -176360124 + (TC)n Simple_repeat Simple_repeat 2 30 0 13015 103 28 46 chr3 51164454 51166336 -176358242 + Tigger1 DNA MER2_type 358 2194 -224 1435 173 4 0 chr3 51166352 51166577 -176358001 - AluJo SINE Alu -8 304 79 280 98 0 0 chr3 51166617 51166658 -176357920 - MER4E LTR ERV1 -72 707 667 1328 95 5 10 chr3 51166662 51166862 -176357716 + Tigger1 DNA MER2_type 2220 2418 0 318 276 67 0 chr3 51166894 51166999 -176357579 - L1MDa LINE L1 -3961 2579 2468 366 220 102 86 chr3 51167338 51167524 -176357054 - HAL1 LINE L1 -847 1660 1472 1620 234 155 5 chr3 51169198 51169869 -176354709 + L1MD2 LINE L1 3956 4727 -1419 3178 181 81 14 chr3 51169869 51170608 -176353970 + L1MD2 LINE L1 5559 6347 -12 31 0 0 0 chr3 51170803 51170834 -176353744 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 51171127 51171148 -176353430 + AT_rich Low_complexity Low_complexity 1 21 0 728 172 30 37 chr3 51171503 51171637 -176352941 + FLAM_A SINE Alu 1 133 0 1813 191 0 19 chr3 51171690 51172005 -176352573 + 7SLRNA srpRNA srpRNA 1 309 -11 450 258 77 45 chr3 51173042 51173197 -176351381 - MER5B DNA MER1_type -2 176 17 740 290 43 4 chr3 51174206 51174522 -176350056 + L2 LINE L2 2695 3021 -292 531 220 38 8 chr3 51174581 51174713 -176349865 + MIR SINE MIR 110 245 -17 26 30 0 0 chr3 51175269 51175302 -176349276 + AT_rich Low_complexity Low_complexity 1 33 0 2215 102 3 10 chr3 51175483 51175787 -176348791 + AluSx SINE Alu 1 302 -10 35 24 0 0 chr3 51176002 51176044 -176348534 + AT_rich Low_complexity Low_complexity 1 42 0 218 294 134 34 chr3 51176345 51176464 -176348114 + L2 LINE L2 3139 3269 -3 995 251 99 49 chr3 51176955 51177943 -176346635 + L1M4 LINE L1 2133 3170 -2976 1047 188 100 78 chr3 51178065 51178426 -176346152 + L1ME1 LINE L1 5789 6157 -9 2263 114 0 3 chr3 51178571 51178877 -176345701 + AluSg SINE Alu 1 305 -5 2408 84 0 0 chr3 51179500 51179808 -176344770 - AluY SINE Alu -3 308 1 289 291 114 15 chr3 51181073 51181344 -176343234 + HAL1 LINE L1 811 1108 -1399 789 271 46 42 chr3 51181381 51181478 -176343100 - MIR SINE MIR 0 262 167 1931 147 3 0 chr3 51181478 51181763 -176342815 + AluJb SINE Alu 3 288 -24 789 271 46 42 chr3 51181763 51181905 -176342673 - MIR SINE MIR -95 167 22 191 260 208 0 chr3 51181943 51182039 -176342539 + L2 LINE L2 3157 3272 0 1839 181 116 54 chr3 51183610 51184180 -176340398 - L1M4 LINE L1 -968 5676 5072 548 231 31 0 chr3 51184181 51184311 -176340267 - MER58B DNA MER1_type 0 341 208 913 244 82 7 chr3 51184315 51184412 -176340166 - L1M4 LINE L1 -1877 4767 4679 180 97 0 0 chr3 51184412 51184443 -176340135 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 913 244 82 7 chr3 51184443 51184615 -176339963 - L1M4 LINE L1 -1965 4679 4478 236 203 16 0 chr3 51184620 51184684 -176339894 - L1MEc LINE L1 -5032 1510 1446 2475 55 3 0 chr3 51184702 51184992 -176339586 - AluY SINE Alu -20 291 1 713 186 16 80 chr3 51185005 51185193 -176339385 - FRAM SINE Alu -7 169 1 502 126 0 21 chr3 51185193 51185288 -176339290 - L1MEc LINE L1 -5258 1567 1475 1633 93 9 0 chr3 51185289 51185504 -176339074 - AluSp SINE Alu -17 296 80 1388 209 72 20 chr3 51185604 51186096 -176338482 - L1ME LINE L1 -672 5494 4774 2467 68 0 0 chr3 51186096 51186392 -176338186 - AluY SINE Alu -15 296 1 1388 209 72 20 chr3 51186392 51186438 -176338140 - L1ME LINE L1 -1392 4774 4732 267 225 113 25 chr3 51187022 51187102 -176337476 - L2 LINE L2 -8 3305 3219 22 35 0 0 chr3 51188103 51188132 -176336446 + AT_rich Low_complexity Low_complexity 1 29 0 486 0 0 0 chr3 51188932 51188986 -176335592 + (TA)n Simple_repeat Simple_repeat 2 55 0 2131 117 0 0 chr3 51188986 51189269 -176335309 - AluSc SINE Alu -26 283 1 423 308 124 24 chr3 51189552 51189890 -176334688 + L1MEd LINE L1 463 834 -5285 597 277 36 24 chr3 51190159 51190532 -176334046 + L1MEd LINE L1 1019 1604 -4706 1261 161 96 42 chr3 51190755 51190868 -176333710 + AluJo SINE Alu 1 106 -206 1548 134 116 26 chr3 51190868 51191212 -176333366 + THE1C LTR MaLR 1 375 0 1261 161 96 42 chr3 51191212 51191359 -176333219 + AluJo SINE Alu 106 275 -37 1966 144 3 3 chr3 51191433 51191732 -176332846 + AluSx SINE Alu 3 301 -11 2307 85 0 16 chr3 51191753 51192069 -176332509 + AluY SINE Alu 1 311 0 1893 159 0 14 chr3 51192173 51192469 -176332109 + AluJo SINE Alu 1 292 -20 370 160 16 40 chr3 51192471 51192596 -176331982 + GA-rich Low_complexity Low_complexity 3 124 0 243 250 0 0 chr3 51192597 51192645 -176331933 + polypurine Low_complexity Low_complexity 2 49 0 1691 180 20 0 chr3 51192981 51193281 -176331297 + AluJb SINE Alu 3 308 -4 980 183 0 17 chr3 51193957 51194132 -176330446 - FRAM SINE Alu -5 171 1 309 110 41 0 chr3 51195714 51195787 -176328791 + (TA)n Simple_repeat Simple_repeat 2 77 0 2056 133 0 3 chr3 51196482 51196790 -176327788 + AluSx SINE Alu 1 307 -5 1454 147 128 22 chr3 51197001 51197320 -176327258 + MSTA LTR MaLR 1 353 -75 417 70 0 0 chr3 51197610 51197667 -176326911 + (CA)n Simple_repeat Simple_repeat 2 58 0 379 183 29 29 chr3 51197878 51198015 -176326563 + CT-rich Low_complexity Low_complexity 3 139 0 10224 166 22 44 chr3 51198377 51200824 -176323754 - L1PB1 LINE L1 0 6151 3652 2442 82 0 3 chr3 51200824 51201127 -176323451 - AluY SINE Alu -9 302 1 10224 166 22 44 chr3 51201127 51201761 -176322817 - L1PB1 LINE L1 -2499 3652 3166 2731 10 0 0 chr3 51201761 51202061 -176322517 - AluY SINE Alu -11 300 1 10224 166 22 44 chr3 51202061 51202519 -176322059 - L1PB1 LINE L1 -2985 3166 2700 456 250 45 45 chr3 51202832 51202861 -176321717 - MIR SINE MIR -90 172 144 2231 117 0 7 chr3 51202861 51203170 -176321408 - AluSx SINE Alu -5 307 1 456 250 45 45 chr3 51203170 51203296 -176321282 - MIR SINE MIR -117 145 17 2367 102 0 13 chr3 51203420 51203735 -176320843 - AluSx SINE Alu -1 311 1 4186 105 11 26 chr3 51204939 51205560 -176319018 + LTR9 LTR ERV1 1 612 0 23 33 0 0 chr3 51205677 51205707 -176318871 + AT_rich Low_complexity Low_complexity 1 30 0 2050 134 7 0 chr3 51205890 51206197 -176318381 + AluSg SINE Alu 1 309 -1 241 320 16 48 chr3 51206265 51206390 -176318188 + MIR SINE MIR 14 134 -128 420 167 123 9 chr3 51206403 51206517 -176318061 - L1MC5 LINE L1 -61 7900 7774 2135 193 62 40 chr3 51206519 51206718 -176317860 - MLT1F LTR MaLR 0 542 349 1027 201 37 0 chr3 51206718 51206932 -176317646 + MER58A DNA MER1_type 2 223 -1 2135 193 62 40 chr3 51206932 51207262 -176317316 - MLT1F LTR MaLR -193 349 1 507 143 223 0 chr3 51207405 51207517 -176317061 - MER7A DNA MER2_type -211 135 1 216 0 0 0 chr3 51210107 51210131 -176314447 + (CAAAA)n Simple_repeat Simple_repeat 4 27 0 207 337 95 11 chr3 51210678 51210773 -176313805 + L2 LINE L2 2993 3095 -177 267 244 87 55 chr3 51211029 51211156 -176313422 - MER5A DNA MER1_type 0 189 59 674 217 94 5 chr3 51211157 51211369 -176313209 - L1MC4 LINE L1 0 8042 7812 1079 233 137 47 chr3 51211661 51212151 -176312427 + MLT1F LTR MaLR 1 534 -8 21 36 0 0 chr3 51212362 51212390 -176312188 + AT_rich Low_complexity Low_complexity 1 28 0 359 278 122 31 chr3 51212568 51212856 -176311722 - L1MC4a LINE L1 -1872 5936 5623 477 291 75 58 chr3 51212870 51213148 -176311430 + L2 LINE L2 1669 1951 -1363 488 168 32 0 chr3 51213148 51213243 -176311335 + MER3 DNA MER1_type 109 206 -3 410 325 227 13 chr3 51213247 51213850 -176310728 + L2 LINE L2 2164 2895 -419 957 214 6 0 chr3 51216150 51216323 -176308255 - FAM SINE Alu -1 174 1 186 325 84 0 chr3 51216615 51216698 -176307880 + L2 LINE L2 3145 3234 -38 265 238 0 50 chr3 51216769 51216849 -176307729 - MIR SINE MIR -62 200 125 1993 85 0 0 chr3 51216993 51217239 -176307339 + AluY SINE Alu 49 294 -17 26 64 0 0 chr3 51217685 51217732 -176306846 + AT_rich Low_complexity Low_complexity 1 47 0 180 265 20 0 chr3 51218576 51218625 -176305953 + MIR3 SINE MIR 134 183 -25 471 296 148 12 chr3 51219182 51219425 -176305153 - L3 LINE CR1 -13 1564 1289 213 327 119 0 chr3 51219718 51219819 -176304759 - L2 LINE L2 0 3272 3160 2060 63 47 0 chr3 51220922 51221177 -176303401 + AluY SINE Alu 44 310 -1 394 241 0 18 chr3 51221243 51221355 -176303223 + MIR SINE MIR 153 262 0 182 242 65 0 chr3 51222118 51222180 -176302398 + MIR SINE MIR 77 142 -66 1751 162 16 20 chr3 51222209 51222512 -176302066 + AluJb SINE Alu 5 306 -6 662 198 9 0 chr3 51224893 51225009 -176299569 + MER119 DNA MER1_type 1 117 -466 1631 214 20 96 chr3 51225612 51226310 -176298268 + MLT1E LTR MaLR 33 593 0 1724 179 24 7 chr3 51226312 51226608 -176297970 + AluJo SINE Alu 1 301 -11 203 152 0 0 chr3 51226613 51226646 -176297932 + A-rich Low_complexity Low_complexity 3 35 0 1962 144 41 0 chr3 51227194 51227486 -176297092 - AluJb SINE Alu -8 304 1 2312 107 0 0 chr3 51228618 51228916 -176295662 - AluSx SINE Alu -14 298 1 283 359 39 0 chr3 51228921 51229049 -176295529 - MIR3 SINE MIR -30 178 46 202 307 100 0 chr3 51229428 51229578 -176295000 - L2 LINE L2 -238 3034 2870 232 340 40 35 chr3 51229617 51229817 -176294761 - L2 LINE L2 -520 2794 2594 1999 125 17 7 chr3 51230460 51230748 -176293830 + AluSq SINE Alu 1 291 -22 266 256 26 13 chr3 51231136 51231214 -176293364 - MER117 DNA MER1_type -80 117 39 481 200 30 0 chr3 51231570 51231670 -176292908 - MER5B DNA MER1_type -75 103 1 197 238 153 69 chr3 51232719 51232921 -176291657 + L2 LINE L2 3077 3295 -18 583 233 194 0 chr3 51234409 51234615 -176289963 - MIR SINE MIR -1 261 16 2354 101 0 0 chr3 51234945 51235251 -176289327 + AluSx SINE Alu 1 306 -6 2178 106 0 7 chr3 51235274 51235567 -176289011 + AluSq SINE Alu 5 295 -18 1847 132 14 27 chr3 51237197 51237492 -176287086 - AluJb SINE Alu -21 291 1 1134 174 15 0 chr3 51239487 51239683 -176284895 + L1PBa LINE L1 2 200 -6663 1079 112 92 36 chr3 51239683 51239879 -176284699 + L1PBa LINE L1 634 840 -6023 * 8235 86 56 18 chr3 51239877 51240959 -176283619 + L1PBa LINE L1 1702 2875 -3987 2329 128 33 8 chr3 51240959 51241325 -176283253 - THE1C LTR MaLR 0 375 1 8235 86 56 18 chr3 51241325 51241863 -176282715 + L1PBa LINE L1 2875 3391 -3471 271 250 0 0 chr3 51241963 51242015 -176282563 + AluSc SINE Alu 228 279 -20 504 0 0 0 chr3 51242019 51242075 -176282503 + (TA)n Simple_repeat Simple_repeat 2 57 0 825 215 37 0 chr3 51243101 51243264 -176281314 + MER58A DNA MER1_type 31 199 -25 2570 65 0 3 chr3 51243343 51243651 -176280927 - AluY SINE Alu -4 307 1 654 230 13 7 chr3 51246158 51246310 -176278268 + MIR SINE MIR 72 224 -38 597 145 154 17 chr3 51247191 51247308 -176277270 + AluJo SINE Alu 1 133 -169 21 0 0 0 chr3 51248415 51248436 -176276142 + AT_rich Low_complexity Low_complexity 1 21 0 814 193 0 27 chr3 51248799 51248949 -176275629 + AluJo SINE Alu 141 286 -26 409 288 122 23 chr3 51253395 51253690 -176270888 + L2 LINE L2 1118 1511 -1803 1084 256 184 29 chr3 51253886 51254510 -176270068 + L2 LINE L2 2002 2722 -592 2603 224 73 5 chr3 51254519 51255522 -176269056 - L1MEc LINE L1 -3277 2938 1900 725 216 111 0 chr3 51255571 51255761 -176268817 - L1MEc LINE L1 -4585 1811 1601 2177 241 120 14 chr3 51255772 51256478 -176268100 - L1MEc LINE L1 -5581 815 35 517 232 103 27 chr3 51256487 51256672 -176267906 + L2 LINE L2 2721 2919 -395 395 264 28 38 chr3 51257371 51257477 -176267101 + MER45A DNA AcHobo 1 105 -73 7377 167 129 25 chr3 51257481 51258602 -176265976 + L1PA13 LINE L1 3414 4754 -2108 2125 114 0 14 chr3 51258602 51258891 -176265687 + AluSg SINE Alu 1 285 -25 7377 167 129 25 chr3 51258891 51259380 -176265198 + L1PA13 LINE L1 4754 5191 -1671 545 73 0 0 chr3 51259380 51259476 -176265102 + AluSg/x SINE Alu 214 309 0 5860 97 36 6 chr3 51259477 51261141 -176263437 + L1PA13 LINE L1 5185 6879 0 2059 120 14 0 chr3 51261165 51261441 -176263137 - AluSx SINE Alu -32 280 1 336 141 16 47 chr3 51261446 51261510 -176263068 + MER45A DNA AcHobo 98 159 -19 2328 99 0 0 chr3 51262040 51262332 -176262246 + AluSx SINE Alu 1 292 -20 2392 74 10 3 chr3 51262332 51262630 -176261948 + AluY SINE Alu 1 300 -11 363 311 0 47 chr3 51262939 51263087 -176261491 + MER46C DNA MER2_type 176 316 -22 434 246 74 40 chr3 51264639 51264814 -176259764 - MER5A DNA MER1_type -2 187 7 25 0 0 0 chr3 51266642 51266667 -176257911 + GC_rich Low_complexity Low_complexity 1 25 0 316 263 137 9 chr3 51269485 51269633 -176254945 + MIR SINE MIR 20 185 -61 1013 150 30 12 chr3 51270886 51271053 -176253525 - FRAM SINE Alu -12 164 1 4246 188 14 45 chr3 51321435 51322529 -176202049 + L1 LINE L1 3544 4603 -1543 714 208 147 25 chr3 51322549 51322746 -176201832 - MER58A DNA MER1_type -3 221 1 313 160 15 15 chr3 51323147 51323226 -176201352 - LTR49 LTR ERV1 -22 600 509 * 906 166 73 29 chr3 51323218 51323423 -176201155 - LTR29 LTR ERV1 -408 214 1 2347 83 10 7 chr3 51323552 51323854 -176200724 - AluSq SINE Alu -8 305 3 238 239 76 22 chr3 51324662 51324754 -176199824 + L1MEc LINE L1 2298 2394 -4002 2092 87 0 0 chr3 51324755 51325019 -176199559 + AluY SINE Alu 40 303 -8 703 102 0 9 chr3 51325029 51325137 -176199441 + L1MC3 LINE L1 6712 6818 -967 1029 151 28 5 chr3 51325138 51325350 -176199228 + L1MC3 LINE L1 7568 7784 -1 1852 143 21 0 chr3 51325570 51325849 -176198729 - AluJb SINE Alu -5 307 23 1057 283 123 18 chr3 51326853 51327405 -176197173 - L1MC4a LINE L1 -1866 5942 5333 899 175 124 0 chr3 51327571 51327788 -176196790 - L1MC2 LINE L1 -16 6328 6085 1011 223 147 28 chr3 51327788 51328115 -176196463 + MLT1A2 LTR MaLR 1 366 -8 3255 131 9 35 chr3 51328118 51328697 -176195881 - L1MC2 LINE L1 -254 6090 5527 2122 136 0 16 chr3 51328736 51329052 -176195526 - AluSx SINE Alu -1 311 1 2723 228 79 20 chr3 51329055 51329992 -176194586 - L1MC4a LINE L1 -841 5305 4314 2230 115 0 0 chr3 51330131 51330427 -176194151 + AluSq SINE Alu 1 296 -17 797 246 223 8 chr3 51331062 51331416 -176193162 + LTR16A LTR ERVL 21 450 0 351 295 107 42 chr3 51331583 51331919 -176192659 + MARNA DNA Mariner 10 367 -219 4278 174 55 17 chr3 51332056 51333052 -176191526 - L1MB8 LINE L1 -11 6167 5110 2356 84 0 3 chr3 51333052 51333351 -176191227 - AluY SINE Alu -13 298 1 4278 174 55 17 chr3 51333351 51333707 -176190871 - L1MB8 LINE L1 -1068 5110 4769 1040 280 111 16 chr3 51333737 51334334 -176190244 - L2 LINE L2 0 3313 2633 1919 273 152 9 chr3 51334426 51335218 -176189360 - L2 LINE L2 -1208 2106 1202 330 236 142 42 chr3 51335221 51335433 -176189145 - L2 LINE L2 -2505 809 577 28 29 0 0 chr3 51335701 51335736 -176188842 + AT_rich Low_complexity Low_complexity 1 35 0 358 222 48 28 chr3 51336330 51336478 -176188100 + L1ME2 LINE L1 5730 5883 -281 1853 114 39 85 chr3 51337153 51337540 -176187038 - THE1C LTR MaLR 0 375 7 2333 77 0 0 chr3 51338517 51338828 -176185750 - L1PA8 LINE L1 0 6172 5862 434 250 98 0 chr3 51339701 51339813 -176184765 - MIR SINE MIR -93 169 47 1041 255 54 57 chr3 51340507 51341321 -176183257 + L1ME2 LINE L1 827 3581 -1305 2158 121 51 28 chr3 51341321 51341677 -176182901 + THE1B LTR MaLR 1 364 0 10225 77 6 96 chr3 51341677 51342104 -176182474 + THE1B-int LTR MaLR 1 465 -1115 2117 128 0 7 chr3 51342104 51342408 -176182170 - AluSq SINE Alu -11 302 1 10225 77 6 96 chr3 51342408 51343716 -176180862 + THE1B-int LTR MaLR 465 1580 0 1843 121 130 30 chr3 51343716 51344047 -176180531 + THE1B LTR MaLR 1 364 0 2095 253 42 20 chr3 51344074 51344274 -176180304 + L1ME2 LINE L1 3606 3800 -2346 1690 197 3 0 chr3 51344274 51344563 -176180015 + AluJo SINE Alu 1 290 -22 2095 253 42 20 chr3 51344563 51345075 -176179503 + L1ME2 LINE L1 3800 4334 -1812 1510 159 26 0 chr3 51345082 51345346 -176179232 - Tigger3(Golem) DNA MER2_type -3 3026 2756 1331 155 5 0 chr3 51345346 51345546 -176179032 + AluSg/x SINE Alu 99 299 -13 386 239 0 0 chr3 51345546 51345617 -176178961 - Tigger3(Golem) DNA MER2_type -2958 71 1 3271 217 65 23 chr3 51345642 51345966 -176178612 + L1ME2 LINE L1 4410 4719 -1445 2215 107 3 7 chr3 51345966 51346276 -176178302 + AluSc SINE Alu 1 309 0 3271 217 65 23 chr3 51346276 51347633 -176176945 + L1ME2 LINE L1 4719 6154 -10 223 309 59 0 chr3 51348150 51348218 -176176360 + L2 LINE L2 3185 3256 -16 2371 97 0 0 chr3 51348582 51348891 -176175687 - AluY SINE Alu -2 309 1 2300 101 0 16 chr3 51348920 51349228 -176175350 - AluSg SINE Alu -7 303 1 1435 162 33 2 chr3 51349919 51350217 -176174361 + L1MC2 LINE L1 5698 5999 -334 1750 70 91 0 chr3 51350228 51350470 -176174108 - AluY SINE Alu -4 307 44 1531 209 7 7 chr3 51350479 51350805 -176173773 - AluJb SINE Alu 0 326 1 308 145 53 13 chr3 51350807 51350883 -176173695 + L1MC2 LINE L1 6258 6336 -8 915 122 0 0 chr3 51351537 51351660 -176172918 + FRAM SINE Alu 33 155 -21 1463 228 62 11 chr3 51351814 51352252 -176172326 + L1ME1 LINE L1 5689 6148 -18 711 71 0 62 chr3 51352378 51352490 -176172088 + HY1 scRNA scRNA 5 109 -3 576 229 46 122 chr3 51352510 51352968 -176171610 + L1MC4 LINE L1 7617 8039 -3 561 170 0 0 chr3 51353570 51353664 -176170914 - MER20 DNA MER1_type 0 219 126 310 238 74 41 chr3 51354847 51354969 -176169609 - L1ME4a LINE L1 -22 6099 5974 234 314 83 18 chr3 51354974 51355203 -176169375 - L1ME4a LINE L1 -1882 5926 5683 411 335 42 78 chr3 51355203 51355490 -176169088 - L1ME4a LINE L1 -1016 5130 4859 2030 147 0 10 chr3 51355490 51355803 -176168775 - AluSx SINE Alu -2 310 1 411 335 42 78 chr3 51355803 51355915 -176168663 - L1ME4a LINE L1 -1287 4859 4745 347 295 9 29 chr3 51357254 51357359 -176167219 - L2 LINE L2 -2 3270 3168 951 183 0 0 chr3 51357904 51358073 -176166505 - MIR SINE MIR -21 241 73 451 287 154 5 chr3 51358220 51358408 -176166170 - MIR SINE MIR -27 235 20 27 49 0 0 chr3 51359263 51359304 -176165274 + AT_rich Low_complexity Low_complexity 1 41 0 1221 200 161 36 chr3 51359861 51360451 -176164127 + HAL1 LINE L1 908 1571 -936 280 295 192 26 chr3 51360505 51360854 -176163724 + HAL1 LINE L1 1732 2138 -369 371 226 240 5 chr3 51361009 51361213 -176163365 + HAL1 LINE L1 2256 2507 0 2227 111 10 97 chr3 51361324 51361842 -176162736 + MER4B LTR ERV1 1 581 -185 2379 93 0 3 chr3 51361842 51362152 -176162426 - AluY SINE Alu -2 309 1 2227 111 10 97 chr3 51362152 51362324 -176162254 + MER4B LTR ERV1 581 766 0 199 255 21 0 chr3 51362333 51362380 -176162198 - L3b LINE CR1 -3 1580 1533 1985 152 47 3 chr3 51363502 51363865 -176160713 - MER4D LTR ERV1 0 903 525 1843 139 15 0 chr3 51363876 51364149 -176160429 - AluJb SINE Alu -27 285 9 277 173 0 19 chr3 51364152 51364204 -176160374 - Alu SINE Alu -252 51 1 2889 131 20 59 chr3 51364207 51364764 -176159814 - MER4D LTR ERV1 -368 535 1 2491 53 98 0 chr3 51365200 51365557 -176159021 + LTR17 LTR ERV1 389 780 0 1827 157 40 11 chr3 51365872 51366223 -176158355 + LTR49 LTR ERV1 1 361 -234 11979 30 3 6 chr3 51366223 51367745 -176156833 - L1PA3 LINE L1 -1485 4661 3145 7673 24 0 2 chr3 51367746 51369259 -176155319 + L1PA3 LINE L1 4644 6154 -1 1074 157 46 14 chr3 51369274 51369491 -176155087 + LTR49 LTR ERV1 370 593 -2 213 263 125 100 chr3 51369962 51370122 -176154456 - MIR SINE MIR -64 198 35 376 241 100 24 chr3 51370491 51370661 -176153917 + L1P LINE L1 3586 3768 -2378 3713 135 33 55 chr3 51370667 51371156 -176153422 + MER50 LTR ERV1 1 470 -264 2065 133 0 3 chr3 51371156 51371456 -176153122 + AluSx SINE Alu 1 299 -13 3713 135 33 55 chr3 51371456 51371693 -176152885 + MER50 LTR ERV1 470 711 -23 632 91 1 11 chr3 51371844 51371949 -176152629 + L1PA7 LINE L1 4 419 -6042 544 95 11 0 chr3 51371934 51372029 -176152549 + L1PA7 LINE L1 1302 1397 -5064 * 6368 75 32 0 chr3 51372030 51373351 -176151227 + L1PA7 LINE L1 5121 6469 0 1281 295 122 57 chr3 51373612 51373676 -176150902 + L1MC/D LINE L1 3963 4021 -2199 1679 193 3 7 chr3 51373676 51373961 -176150617 - AluJo SINE Alu -28 284 1 1281 295 122 57 chr3 51373961 51374097 -176150481 + L1MC/D LINE L1 4021 4147 -2073 2199 95 3 0 chr3 51374097 51374415 -176150163 + AluSq SINE Alu 1 319 0 1281 295 122 57 chr3 51374415 51375627 -176148951 + L1MC/D LINE L1 4147 5470 -750 2318 82 3 7 chr3 51375632 51375926 -176148652 - AluY SINE Alu -18 293 1 230 241 93 0 chr3 51376025 51376079 -176148499 + L1MC/D LINE L1 5584 5642 -2166 1031 167 0 103 chr3 51376366 51376600 -176147978 - AluJb SINE Alu -19 293 84 1341 235 124 60 chr3 51379554 51379756 -176144822 - HsTC2a DNA Tc2 -1189 711 523 2074 95 3 60 chr3 51379756 51380071 -176144507 - AluSx SINE Alu -15 297 1 1341 235 124 60 chr3 51380071 51380536 -176144042 - HsTC2a DNA Tc2 -1377 523 1 2343 124 52 0 chr3 51380963 51381367 -176143211 - MSTB1 LTR MaLR -7 425 1 4081 144 18 16 chr3 51381885 51382165 -176142413 + L1MB3 LINE L1 5447 5725 -458 2500 147 29 2 chr3 51382165 51382586 -176141992 + MSTB1 LTR MaLR 1 432 0 4081 144 18 16 chr3 51382586 51383040 -176141538 + L1MB3 LINE L1 5725 6182 -1 2060 117 10 17 chr3 51383906 51384196 -176140382 + AluSq SINE Alu 1 290 -23 528 93 0 0 chr3 51384196 51384271 -176140307 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 2199 118 3 0 chr3 51384567 51384863 -176139715 - AluSg SINE Alu -12 298 2 1426 287 75 16 chr3 51386100 51386977 -176137601 + L2 LINE L2 2394 3313 0 21 36 0 0 chr3 51388018 51388046 -176136532 + AT_rich Low_complexity Low_complexity 1 28 0 413 178 204 6 chr3 51388124 51388281 -176136297 + L1MD2 LINE L1 5143 5330 -816 4980 42 0 0 chr3 51388284 51388881 -176135697 + L1PA5 LINE L1 5558 6154 0 2974 60 11 0 chr3 51388920 51389301 -176135277 + L1PA5 LINE L1 5770 6154 0 5050 156 54 14 chr3 51389302 51390076 -176134502 + L1MD2 LINE L1 5319 6143 -216 2145 117 13 3 chr3 51390076 51390376 -176134202 + AluSq SINE Alu 1 303 -10 5050 156 54 14 chr3 51390376 51390602 -176133976 + L1MD2 LINE L1 6143 6359 0 419 233 45 30 chr3 51392300 51392433 -176132145 - MIR SINE MIR -40 222 88 621 250 75 27 chr3 51392438 51392626 -176131952 - L2 LINE L2 -727 2587 2391 1319 249 98 29 chr3 51392673 51393222 -176131356 + L1MEc LINE L1 44 630 -5766 752 166 28 28 chr3 51393226 51393407 -176131171 + L1MEc LINE L1 1949 2129 -4267 2355 77 0 7 chr3 51393439 51393736 -176130842 - AluY SINE Alu -16 295 1 39 0 0 0 chr3 51393825 51393864 -176130714 + AT_rich Low_complexity Low_complexity 1 39 0 3218 203 97 25 chr3 51394020 51395062 -176129516 + L1MEc LINE L1 2197 3314 -2901 1937 188 148 13 chr3 51395062 51395520 -176129058 + MLT2B1 LTR ERVL 1 520 0 3218 203 97 25 chr3 51395520 51395619 -176128959 + L1MEc LINE L1 3314 3404 -2811 231 274 51 43 chr3 51395988 51396105 -176128473 - L2 LINE L2 -23 3290 3173 269 326 150 52 chr3 51396255 51396776 -176127802 - L2 LINE L2 -340 2974 2403 268 125 0 0 chr3 51397230 51397270 -176127308 - MER5C DNA MER1_type 0 324 285 795 190 185 85 chr3 51397301 51397653 -176126925 + MLT1B LTR MaLR 4 390 0 485 267 35 0 chr3 51397781 51397897 -176126681 - MER5C DNA MER1_type -202 122 3 6084 131 28 28 chr3 51398043 51399110 -176125468 + MER11C LTR ERVK 1 1067 -4 1279 207 30 41 chr3 51399947 51400766 -176123812 - L1M4 LINE L1 -1204 4942 4015 4010 175 24 16 chr3 51401005 51401800 -176122778 + L1MB4 LINE L1 5380 6180 0 594 296 34 45 chr3 51402086 51402585 -176121993 - LTR67 LTR ERVL 0 557 6 513 341 118 30 chr3 51402648 51403014 -176121564 - L2 LINE L2 -339 2975 2578 239 303 67 0 chr3 51403136 51403225 -176121353 - L2 LINE L2 -941 2373 2279 249 294 85 100 chr3 51404252 51404843 -176119735 + L2 LINE L2 2278 2859 -455 275 214 164 0 chr3 51406143 51406283 -176118295 + L1ME3 LINE L1 5893 6055 -107 194 226 21 21 chr3 51406542 51406635 -176117943 + (TA)n Simple_repeat Simple_repeat 1 93 0 261 0 0 0 chr3 51406656 51406685 -176117893 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr3 51406969 51406990 -176117588 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 51407028 51407049 -176117529 + AT_rich Low_complexity Low_complexity 1 21 0 1418 148 4 18 chr3 51408381 51408610 -176115968 + AluJb SINE Alu 84 309 -3 239 219 110 75 chr3 51408698 51408926 -176115652 + HAL1b LINE L1 300 535 -813 278 275 38 0 chr3 51408996 51409076 -176115502 + MER5A DNA MER1_type 9 91 -98 329 304 168 0 chr3 51409149 51409310 -176115268 + HAL1b LINE L1 664 851 -497 230 302 20 0 chr3 51409514 51409663 -176114915 + L1MDa LINE L1 2491 2642 -3898 234 168 53 44 chr3 51410010 51410123 -176114455 + (TA)n Simple_repeat Simple_repeat 1 114 0 1469 124 50 124 chr3 51410133 51410495 -176114083 + MER44D DNA MER2_type 2 606 -3 240 35 0 0 chr3 51410496 51410525 -176114053 + (TG)n Simple_repeat Simple_repeat 2 30 0 2153 108 3 26 chr3 51411233 51411540 -176113038 + AluSx SINE Alu 1 300 -12 442 216 46 22 chr3 51412181 51412333 -176112245 - L1MD2 LINE L1 -24 6142 6003 23 33 0 0 chr3 51412341 51412371 -176112207 + AT_rich Low_complexity Low_complexity 1 30 0 201 180 0 0 chr3 51414097 51414147 -176110431 + GA-rich Low_complexity Low_complexity 1 50 0 2012 142 35 0 chr3 51414592 51414880 -176109698 - AluSx SINE Alu -9 303 6 2296 104 0 19 chr3 51414886 51415195 -176109383 - AluSc SINE Alu -6 303 1 285 203 101 0 chr3 51415252 51415321 -176109257 - MER5C DNA MER1_type -248 76 1 355 249 13 3 chr3 51416489 51416623 -176107955 - L1ME1 LINE L1 -2 6162 6025 387 0 0 0 chr3 51417233 51417276 -176107302 + (CA)n Simple_repeat Simple_repeat 1 43 0 411 220 409 5 chr3 51420906 51421092 -176103486 - MIR SINE MIR 0 262 2 21 36 0 0 chr3 51421113 51421141 -176103437 + AT_rich Low_complexity Low_complexity 1 28 0 270 188 14 29 chr3 51421747 51421816 -176102762 + L1MB8 LINE L1 6110 6177 -1 186 298 0 0 chr3 51422228 51422275 -176102303 - MIR SINE MIR -106 156 110 180 337 58 12 chr3 51422541 51422627 -176101951 - MIR SINE MIR -15 247 158 269 135 19 0 chr3 51422739 51422791 -176101787 + CT-rich Low_complexity Low_complexity 2 54 0 298 258 45 0 chr3 51422817 51422906 -176101672 + L1MC4 LINE L1 7936 8028 -14 2372 65 10 3 chr3 51423005 51423311 -176101267 - AluY SINE Alu -3 308 1 2388 110 0 0 chr3 51424135 51424445 -176100133 + AluSx SINE Alu 1 310 -2 2304 95 26 0 chr3 51424986 51425290 -176099288 - AluSx SINE Alu 0 312 1 747 125 21 7 chr3 51425327 51425471 -176099107 - L1MA9 LINE L1 0 6312 6167 1184 145 24 95 chr3 51425912 51426208 -176098370 + L1 LINE L1 4674 4948 -1198 * 2246 212 40 34 chr3 51426202 51426943 -176097635 + L1MDa LINE L1 1279 2024 -4516 582 236 67 39 chr3 51426944 51427152 -176097426 - MLT1C LTR MaLR 0 467 254 1223 151 33 154 chr3 51428733 51429065 -176095513 - AluJo SINE Alu -10 292 1 205 257 250 29 chr3 51429930 51430070 -176094508 + MER5A DNA MER1_type 1 171 -18 985 302 133 9 chr3 51430373 51431003 -176093575 - L1MC4a LINE L1 -1635 6173 5466 590 278 16 32 chr3 51431017 51431265 -176093313 - L1ME1 LINE L1 -7 6159 5916 * 6660 172 72 101 chr3 51431256 51431897 -176092681 - L1MDa LINE L1 -3691 2849 2191 615 203 109 0 chr3 51431897 51432025 -176092553 + FLAM_C SINE Alu 1 142 -1 6660 172 72 101 chr3 51432025 51432323 -176092255 - L1MDa LINE L1 -4349 2191 1886 504 117 0 0 chr3 51432323 51432400 -176092178 + (TATG)n Simple_repeat Simple_repeat 4 80 0 6660 172 72 101 chr3 51432400 51432425 -176092153 - L1MDa LINE L1 -4654 1886 1862 2186 130 0 0 chr3 51432425 51432718 -176091860 - AluSq SINE Alu -20 293 1 6660 172 72 101 chr3 51432718 51433156 -176091422 - L1MDa LINE L1 -4678 1862 1413 2233 112 3 3 chr3 51433156 51433459 -176091119 - AluSg SINE Alu -7 303 1 6660 172 72 101 chr3 51433459 51433807 -176090771 - L1MDa LINE L1 -5127 1413 1056 2270 125 3 0 chr3 51433807 51434118 -176090460 - AluSx SINE Alu 0 312 1 6660 172 72 101 chr3 51434118 51434639 -176089939 - L1MDa LINE L1 -5484 1056 516 402 288 61 43 chr3 51434654 51434817 -176089761 - MIR3 SINE MIR -15 193 28 21 57 0 0 chr3 51435334 51435369 -176089209 + AT_rich Low_complexity Low_complexity 1 35 0 416 315 99 6 chr3 51436348 51436691 -176087887 + L1M4 LINE L1 3989 4363 -1783 828 159 134 104 chr3 51437002 51437079 -176087499 - Charlie1 DNA MER1_type -2 2759 2686 2574 69 0 0 chr3 51437079 51437382 -176087196 + AluY SINE Alu 1 303 -8 828 159 134 104 chr3 51437382 51437457 -176087121 - Charlie1 DNA MER1_type -75 2686 2615 1888 162 30 3 chr3 51437457 51437753 -176086825 + AluJb SINE Alu 1 304 -8 828 159 134 104 chr3 51437753 51437994 -176086584 - Charlie1 DNA MER1_type -146 2615 2353 22 0 0 0 chr3 51441088 51441110 -176083468 + AT_rich Low_complexity Low_complexity 1 22 0 804 145 22 0 chr3 51441320 51441458 -176083120 + L1MA5A LINE L1 6147 6287 -10 298 135 0 0 chr3 51441652 51441704 -176082874 + L1MA4A LINE L1 4826 4877 -1269 545 158 0 0 chr3 51441714 51441796 -176082782 + AluS SINE Alu 1 82 -231 2497 72 0 0 chr3 51441796 51442100 -176082478 + AluY SINE Alu 1 304 -7 1533 136 0 5 chr3 51442102 51442323 -176082255 + AluSc SINE Alu 77 296 -13 5233 133 39 42 chr3 51442330 51443677 -176080901 + L1MA4A LINE L1 4885 6218 -85 1739 170 43 3 chr3 51443677 51443959 -176080619 - AluJb SINE Alu -19 293 1 5233 133 39 42 chr3 51443959 51444044 -176080534 + L1MA4A LINE L1 6218 6302 -1 260 241 11 0 chr3 51444033 51444120 -176080458 - L1ME4a LINE L1 -62 6059 5972 * 266 202 53 21 chr3 51444129 51444223 -176080355 - L1ME4a LINE L1 -194 5927 5831 40597 35 22 1 chr3 51445448 51451473 -176073105 + L1PA2 LINE L1 2 6154 -1 2003 257 86 7 chr3 51451519 51452126 -176072452 + L1MDb LINE L1 7 644 -5765 424 196 65 78 chr3 51452122 51452275 -176072303 + L1MDb LINE L1 452 602 -5807 * 1884 125 14 17 chr3 51453568 51453881 -176070697 - AluSx SINE Alu 0 312 1 2117 134 27 0 chr3 51453887 51454186 -176070392 - AluSg SINE Alu -3 307 1 389 297 69 35 chr3 51455029 51455231 -176069347 + MIR SINE MIR 42 250 -12 2300 92 0 3 chr3 51455276 51455570 -176069008 - AluSg SINE Alu -17 293 1 375 316 153 37 chr3 51455929 51456144 -176068434 + MIR SINE MIR 18 257 -5 2396 106 0 0 chr3 51458101 51458412 -176066166 + AluSx SINE Alu 1 311 -1 26 30 0 0 chr3 51458842 51458875 -176065703 + AT_rich Low_complexity Low_complexity 1 33 0 2288 121 0 3 chr3 51459069 51459383 -176065195 + AluSq SINE Alu 1 313 0 1702 177 40 13 chr3 51459511 51459810 -176064768 + AluJb SINE Alu 6 312 0 668 284 85 34 chr3 51460431 51460902 -176063676 - L1ME4a LINE L1 -170 5951 5457 1871 167 3 19 chr3 51461272 51461584 -176062994 + AluJo SINE Alu 1 307 -5 2339 65 17 3 chr3 51461803 51462095 -176062483 + AluY SINE Alu 1 296 -15 521 187 56 9 chr3 51463881 51463988 -176060590 + LTR18B LTR ERVL 1 112 -502 1592 120 130 3 chr3 51464012 51464304 -176060274 + LTR18B LTR ERVL 286 614 0 208 217 43 0 chr3 51464956 51465002 -176059576 + GA-rich Low_complexity Low_complexity 3 50 0 333 293 55 50 chr3 51466594 51466775 -176057803 + HAL1b LINE L1 135 316 -1032 468 284 90 30 chr3 51467433 51467732 -176056846 + L1M4 LINE L1 3253 3569 -2577 269 290 101 19 chr3 51467834 51468041 -176056537 + L1MC4a LINE L1 6420 6643 -1165 397 258 94 34 chr3 51468200 51468498 -176056080 + L1M4 LINE L1 2176 2491 -3655 799 103 0 3 chr3 51469039 51469276 -176055302 + AluSx SINE Alu 1 310 0 375 225 67 11 chr3 51469281 51469370 -176055208 + L1MC4 LINE L1 5557 5650 -2158 345 287 128 26 chr3 51469372 51469567 -176055011 + L1MC4 LINE L1 5708 5922 -1886 309 253 119 49 chr3 51470137 51470422 -176054156 + L1MC4 LINE L1 7433 7737 -305 5431 119 36 5 chr3 51470445 51471202 -176053376 + LTR17 LTR ERV1 1 780 0 41997 65 2 3 chr3 51471250 51477409 -176047169 + L1PA5 LINE L1 3 6154 0 801 152 19 44 chr3 51477429 51477587 -176046991 + AluJb SINE Alu 159 312 0 24 32 0 0 chr3 51479118 51479149 -176045429 + AT_rich Low_complexity Low_complexity 1 31 0 2514 60 0 3 chr3 51479258 51479559 -176045019 + AluY SINE Alu 1 300 -11 1315 166 18 14 chr3 51479728 51479951 -176044627 + MER58A DNA MER1_type 1 224 0 1863 143 35 0 chr3 51480842 51481129 -176043449 - AluJb SINE Alu -15 297 1 518 218 147 0 chr3 51481316 51481472 -176043106 + L1MC/D LINE L1 5325 5503 -2305 884 279 85 14 chr3 51481577 51481871 -176042707 + LTR16B LTR ERVL 115 429 -35 2042 144 7 0 chr3 51481977 51482269 -176042309 - AluSx SINE Alu -18 294 1 398 333 0 0 chr3 51482324 51482447 -176042131 - HAL1 LINE L1 -1639 868 746 1044 235 158 23 chr3 51482472 51482914 -176041664 - HAL1 LINE L1 -126 2381 1880 2015 280 76 55 chr3 51482923 51483717 -176040861 - HAL1 LINE L1 -1244 1263 369 1297 111 0 0 chr3 51483717 51483898 -176040680 - L1MA5A LINE L1 0 6297 6117 2015 280 76 55 chr3 51483898 51484273 -176040305 - HAL1 LINE L1 -2138 369 3 343 279 126 0 chr3 51485023 51485134 -176039444 - L2 LINE L2 -1 3312 3188 204 338 28 0 chr3 51485786 51485857 -176038721 - L2 LINE L2 -214 3058 2986 200 319 126 8 chr3 51486149 51486268 -176038310 - L2 LINE L2 -673 2641 2509 1361 147 36 0 chr3 51486557 51486816 -176037762 + Tigger4(Zombi) DNA MER2_type 75 2731 0 909 138 15 0 chr3 51486854 51486984 -176037594 + FLAM_C SINE Alu 2 133 0 529 305 121 27 chr3 51487274 51487863 -176036715 + L1MEc LINE L1 823 1453 -4762 268 310 6 0 chr3 51487868 51487993 -176036585 + L1MEc LINE L1 1595 1720 -856 232 97 0 0 chr3 51487996 51488027 -176036551 - AluJb SINE Alu -19 283 253 921 152 0 67 chr3 51488027 51488205 -176036373 - AluJb SINE Alu -146 166 1 1747 158 7 18 chr3 51488205 51488513 -176036065 - AluJo SINE Alu 0 305 1 6897 112 114 20 chr3 51489175 51490301 -176034277 - Tigger3b DNA MER2_type 0 1231 1 482 247 72 50 chr3 51490654 51491055 -176033523 + MLT1J2 LTR MaLR 1 448 -2 551 250 172 15 chr3 51491126 51491330 -176033248 + MIR SINE MIR 15 250 -12 405 0 0 0 chr3 51491774 51491819 -176032759 + (TA)n Simple_repeat Simple_repeat 1 45 0 2384 87 0 13 chr3 51492519 51492819 -176031759 + AluSx SINE Alu 1 296 -16 184 411 37 0 chr3 51492993 51493100 -176031478 - L2 LINE L2 -336 2977 2867 245 171 114 0 chr3 51493242 51493312 -176031266 + L1MC4 LINE L1 7965 8042 0 335 307 80 85 chr3 51493387 51493599 -176030979 - L2 LINE L2 -8 3264 3054 363 258 119 114 chr3 51494030 51494405 -176030173 + L1ME4a LINE L1 5258 5639 -482 288 0 0 0 chr3 51494405 51494437 -176030141 + (TA)n Simple_repeat Simple_repeat 1 32 0 363 258 119 114 chr3 51494437 51494693 -176029885 + L1ME4a LINE L1 5639 5892 -229 501 318 60 21 chr3 51494743 51494976 -176029602 - MIR SINE MIR -6 256 15 332 229 133 0 chr3 51495068 51495173 -176029405 + L1ME4a LINE L1 6002 6120 -1 2502 68 0 0 chr3 51495278 51495586 -176028992 - AluY SINE Alu -3 308 1 273 302 87 27 chr3 51495810 51495959 -176028619 - MIR3 SINE MIR -9 199 42 2476 57 0 10 chr3 51498438 51498737 -176025841 - AluY SINE Alu -15 296 1 1351 199 60 4 chr3 51498906 51499187 -176025391 + L1MD3 LINE L1 7699 7995 0 1708 143 6 65 chr3 51499201 51499522 -176025056 + AluJb SINE Alu 1 302 -10 381 256 107 55 chr3 51499814 51500123 -176024455 + L1ME4a LINE L1 5767 6091 -30 2197 83 48 0 chr3 51500130 51500419 -176024159 + AluSx SINE Alu 1 303 -9 220 246 18 60 chr3 51501627 51501794 -176022784 + (CGGGG)n Simple_repeat Simple_repeat 5 164 0 381 300 21 38 chr3 51502238 51502478 -176022100 + L2 LINE L2 2890 3125 -188 2385 83 0 0 chr3 51502497 51502798 -176021780 - AluSx SINE Alu -11 301 1 1912 131 13 22 chr3 51502800 51503112 -176021466 + MER44D DNA MER2_type 29 607 -2 196 310 69 0 chr3 51503115 51503173 -176021405 + L2 LINE L2 3247 3308 -5 540 114 114 0 chr3 51503806 51503894 -176020684 - Tigger7 DNA MER2_type -1 2586 2489 * 1449 184 7 26 chr3 51503892 51503942 -176020636 - Tigger7 DNA MER2_type -2220 267 218 3292 104 9 0 chr3 51503942 51504366 -176020212 + MSTA LTR MaLR 1 428 0 1449 184 7 26 chr3 51504366 51504587 -176019991 - Tigger7 DNA MER2_type -2269 218 1 305 288 110 25 chr3 51504619 51504737 -176019841 - L1ME LINE L1 -5686 844 717 436 308 29 69 chr3 51504842 51505189 -176019389 - L1ME LINE L1 -6190 350 18 381 228 103 28 chr3 51505191 51505336 -176019242 - L1MC/D LINE L1 -2345 5463 5308 2056 130 10 0 chr3 51505574 51505867 -176018711 - AluSx SINE Alu -16 296 1 2229 102 0 20 chr3 51505929 51506234 -176018344 - AluSx SINE Alu -13 299 1 347 346 117 8 chr3 51506236 51506502 -176018076 - L1MC/D LINE L1 -1111 5035 4741 270 266 9 62 chr3 51506838 51506951 -176017627 - LTR33A LTR ERVL -2 521 415 304 392 19 0 chr3 51507325 51507483 -176017095 - L1MC/D LINE L1 -1689 4457 4297 959 156 0 0 chr3 51507515 51507669 -176016909 - AluSc SINE Alu -6 303 150 21 36 0 0 chr3 51507708 51507736 -176016842 + AT_rich Low_complexity Low_complexity 1 28 0 290 321 14 50 chr3 51507742 51507799 -176016779 - L1MC/D LINE L1 -2057 4089 4031 9052 65 4 1 chr3 51507799 51508867 -176015711 + MER11C LTR ERVK 1 1071 0 290 321 14 50 chr3 51508867 51509030 -176015548 - L1MC/D LINE L1 -2115 4031 3877 2203 254 146 19 chr3 51509063 51509816 -176014762 - L2 LINE L2 -534 2780 1932 400 321 71 37 chr3 51509910 51510206 -176014372 + L1M4 LINE L1 2162 2467 -3679 535 305 58 6 chr3 51510206 51510380 -176014198 + L2 LINE L2 2892 3074 -239 292 211 70 0 chr3 51511247 51511318 -176013260 + MIR3 SINE MIR 127 202 -6 246 128 0 0 chr3 51511389 51511428 -176013150 + (A)n Simple_repeat Simple_repeat 1 39 0 2141 110 34 0 chr3 51511434 51511726 -176012852 + AluSx SINE Alu 1 302 -10 2262 216 85 6 chr3 51511810 51512292 -176012286 + LTR33 LTR ERVL 2 521 0 1866 259 47 37 chr3 51512794 51513308 -176011270 - LTR40a LTR ERVL 0 519 1 22 0 0 0 chr3 51513446 51513468 -176011110 + AT_rich Low_complexity Low_complexity 1 22 0 320 310 41 85 chr3 51513870 51514260 -176010318 - L2 LINE L2 -89 3183 2811 2203 100 3 7 chr3 51514774 51515073 -176009505 - AluSc SINE Alu -11 298 1 207 191 0 0 chr3 51515157 51515204 -176009374 + A-rich Low_complexity Low_complexity 1 47 0 1065 249 215 15 chr3 51515210 51515619 -176008959 - LTR16C LTR ERVL 0 491 1 1760 154 3 23 chr3 51516036 51516341 -176008237 + AluJb SINE Alu 1 299 -13 2198 95 0 3 chr3 51516341 51516652 -176007926 + AluSx SINE Alu 1 311 0 1974 208 113 14 chr3 51517996 51518481 -176006097 - MLT1F1 LTR MaLR -24 543 11 2314 87 3 43 chr3 51518677 51518999 -176005579 + AluSc SINE Alu 1 309 0 335 355 16 0 chr3 51520557 51520678 -176003900 - MIR3 SINE MIR -52 156 34 226 208 0 0 chr3 51521103 51521151 -176003427 + (CA)n Simple_repeat Simple_repeat 1 48 0 375 225 45 11 chr3 51521152 51521241 -176003337 - L1MC4 LINE L1 -149 7893 7802 * 485 230 0 26 chr3 51521231 51521344 -176003234 - L1MC4a LINE L1 -1080 6728 6619 2353 60 0 0 chr3 51521459 51521741 -176002837 - AluY SINE Alu -29 282 1 657 224 37 66 chr3 51521746 51522079 -176002499 - L1MC4a LINE L1 -2150 5658 5265 2475 67 0 3 chr3 51522089 51522386 -176002192 - AluY SINE Alu -7 304 9 246 32 0 0 chr3 51522491 51522522 -176002056 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 293 307 63 0 chr3 51522600 51522727 -176001851 - L1MC4a LINE L1 -1127 5019 4885 802 252 132 42 chr3 51522912 51523389 -176001189 + LTR33 LTR ERVL 1 520 -1 428 256 132 71 chr3 51523545 51523645 -176000933 + MARNA DNA Mariner 262 355 -231 2178 96 0 0 chr3 51523645 51523916 -176000662 + AluSc SINE Alu 27 297 -12 428 256 132 71 chr3 51523916 51524081 -176000497 + MARNA DNA Mariner 355 543 -43 2028 132 24 3 chr3 51524222 51524518 -176000060 - AluJb SINE Alu -10 302 1 1818 118 97 18 chr3 51524941 51525220 -175999358 - AluSx SINE Alu -11 301 1 1378 161 75 48 chr3 51525511 51525554 -175999024 - MLT2B2 LTR ERVL 0 515 475 378 61 0 0 chr3 51525554 51525603 -175998975 + (TG)n Simple_repeat Simple_repeat 2 50 0 1378 161 75 48 chr3 51525603 51525851 -175998727 - MLT2B2 LTR ERVL -40 475 216 559 216 81 81 chr3 51575951 51576136 -175948442 + MIR3 SINE MIR 19 203 -5 2366 102 0 0 chr3 51576476 51576770 -175947808 - AluSx SINE Alu -16 296 3 242 231 62 0 chr3 51577811 51577876 -175946702 - MIR3 SINE MIR -52 156 88 232 277 159 28 chr3 51578856 51578982 -175945596 + MIR SINE MIR 39 176 -78 2055 131 3 7 chr3 51579075 51579372 -175945206 - AluSx SINE Alu -16 296 1 2439 72 3 7 chr3 51579909 51580215 -175944363 - AluSx SINE Alu -3 309 5 240 320 13 26 chr3 51580931 51581009 -175943569 + L2 LINE L2 3194 3270 -2 1354 187 79 7 chr3 51582350 51582628 -175941950 - AluJb SINE Alu -14 298 1 232 97 0 0 chr3 51582956 51582987 -175941591 - Alu SINE Alu -269 31 1 1924 156 0 3 chr3 51583509 51583810 -175940768 - AluSx SINE Alu -12 300 1 244 314 0 23 chr3 51584463 51584549 -175940029 - MIR SINE MIR -5 257 174 271 348 0 0 chr3 51585035 51585104 -175939474 - L2 LINE L2 -14 3258 3190 2268 113 0 0 chr3 51585652 51585952 -175938626 + AluSg SINE Alu 1 300 -10 284 289 113 28 chr3 51586313 51586455 -175938123 + MIR3 SINE MIR 33 186 -22 336 226 78 10 chr3 51588454 51588556 -175936022 - MLT1L LTR MaLR 0 615 507 312 327 152 23 chr3 51588616 51588873 -175935705 - MLT1L LTR MaLR -204 411 122 1900 158 3 22 chr3 51588926 51589242 -175935336 + AluSx SINE Alu 3 312 0 2552 75 0 0 chr3 51590011 51590319 -175934259 - AluSg SINE Alu 0 310 3 426 20 0 0 chr3 51590974 51591025 -175933553 + (TG)n Simple_repeat Simple_repeat 2 52 0 195 42 0 0 chr3 51591047 51591071 -175933507 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 2178 92 0 7 chr3 51591075 51591357 -175933221 - AluSp SINE Alu -33 280 1 354 277 36 29 chr3 51591673 51591810 -175932768 + MER103 DNA DNA 29 166 0 278 373 124 6 chr3 51592115 51592276 -175932302 - MER5A DNA MER1_type -2 187 8 2247 88 3 14 chr3 51592786 51593081 -175931497 + AluSg SINE Alu 1 292 -18 226 252 57 69 chr3 51597077 51597236 -175927342 + L1MC5 LINE L1 4902 5058 -1088 1098 165 121 40 chr3 51597322 51597570 -175927008 + AluJo SINE Alu 1 268 -44 1913 238 125 23 chr3 51597596 51598322 -175926256 + L1MC5 LINE L1 5220 5394 -752 1522 208 151 116 chr3 51598771 51600043 -175924535 + L1MC5 LINE L1 6616 7931 -30 216 253 157 0 chr3 51600043 51600126 -175924452 - L2 LINE L2 -1488 1826 1731 705 255 103 61 chr3 51600192 51600588 -175923990 + L1MC4a LINE L1 5494 5906 -1902 223 297 10 20 chr3 51600591 51600692 -175923886 + (CATA)n Simple_repeat Simple_repeat 4 103 0 21 0 0 0 chr3 51601479 51601500 -175923078 + AT_rich Low_complexity Low_complexity 1 21 0 2371 75 16 7 chr3 51601730 51602038 -175922540 - AluY SINE Alu 0 311 1 469 183 56 48 chr3 51602603 51602729 -175921849 - MER5A DNA MER1_type -8 181 55 1214 234 168 31 chr3 51602766 51603254 -175921324 - L1ME LINE L1 -5513 557 3 2028 127 3 0 chr3 51603472 51603783 -175920795 - AluSp SINE Alu 0 312 1 447 186 0 23 chr3 51605328 51605414 -175919164 - MIR SINE MIR -57 151 68 303 284 173 0 chr3 51605933 51606060 -175918518 - MIR SINE MIR -1 261 113 255 277 32 21 chr3 51606112 51606206 -175918372 + LTR16A1 LTR ERVL 62 156 -301 1787 170 13 13 chr3 51606374 51606680 -175917898 - AluJo SINE Alu -6 306 1 2206 95 0 0 chr3 51606687 51607002 -175917576 - AluY SINE Alu 0 315 1 284 324 19 0 chr3 51607244 51607349 -175917229 + HAL1 LINE L1 1557 1663 -844 687 202 0 138 chr3 51607356 51607424 -175917154 - MER45A DNA AcHobo -1413 168 92 2335 74 0 3 chr3 51607424 51607730 -175916848 + AluSp SINE Alu 1 305 0 687 202 0 138 chr3 51607730 51607848 -175916730 - MER45A DNA AcHobo -1489 92 7 2004 146 3 3 chr3 51608023 51608324 -175916254 + AluSx SINE Alu 1 301 -11 26 0 0 0 chr3 51608491 51608517 -175916061 + AT_rich Low_complexity Low_complexity 1 26 0 1697 237 60 75 chr3 51608545 51609115 -175915463 - MLT1E LTR MaLR -32 561 1 424 284 57 14 chr3 51609776 51609917 -175914661 + MIR3 SINE MIR 33 179 -29 1334 257 91 7 chr3 51609944 51610361 -175914217 + LTR16A1 LTR ERVL 4 455 -2 1390 153 36 5 chr3 51610479 51610702 -175913876 + MER30 DNA MER1_type 1 230 0 491 135 0 0 chr3 51610949 51611023 -175913555 + MADE1 DNA Mariner 1 74 -6 204 229 186 0 chr3 51612193 51612263 -175912315 - MIR SINE MIR -76 186 104 1140 184 85 0 chr3 51612405 51612606 -175911972 - MER58A DNA MER1_type -2 222 5 281 281 0 16 chr3 51612707 51612771 -175911807 - MER91B DNA MER1_type -127 63 1 726 87 0 0 chr3 51613936 51614028 -175910550 + AluSc SINE Alu 203 294 -15 247 273 103 67 chr3 51614102 51614267 -175910311 - MER5A DNA MER1_type 0 189 19 * 286 329 109 15 chr3 51614133 51614270 -175910308 + MER5B DNA MER1_type 29 178 0 198 0 0 0 chr3 51614350 51614372 -175910206 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 2362 104 3 0 chr3 51614584 51614892 -175909686 - AluSg SINE Alu -1 309 1 2574 63 0 0 chr3 51615243 51615575 -175909003 + AluY SINE Alu 1 332 0 437 215 0 11 chr3 51615695 51615788 -175908790 - L1M4 LINE L1 -2583 3563 3472 1624 258 32 45 chr3 51615870 51616432 -175908146 + L1MCb LINE L1 1 555 -5490 596 226 47 68 chr3 51616467 51616657 -175907921 + L1MCb LINE L1 647 832 -5213 582 238 0 0 chr3 51616648 51616770 -175907808 - L1MC3 LINE L1 -1286 6499 6378 * 302 284 140 48 chr3 51617326 51617682 -175906896 - L2 LINE L2 -959 2355 1967 1965 120 44 0 chr3 51617735 51618036 -175906542 + AluSq SINE Alu 1 313 0 1745 154 35 0 chr3 51618234 51618520 -175906058 - AluJo SINE Alu -5 307 12 881 267 155 36 chr3 51618798 51619300 -175905278 + L1ME4a LINE L1 5324 5885 -236 198 0 0 0 chr3 51619709 51619731 -175904847 + (TG)n Simple_repeat Simple_repeat 1 22 0 225 65 0 0 chr3 51619731 51619762 -175904816 + (GA)n Simple_repeat Simple_repeat 2 32 0 306 311 10 19 chr3 51620612 51620715 -175903863 - L2 LINE L2 0 3313 3212 2525 180 74 6 chr3 51620715 51621188 -175903390 - MLT1D LTR MaLR 0 505 1 223 225 67 22 chr3 51621562 51621651 -175902927 - L2 LINE L2 -566 2748 2656 1643 193 71 62 chr3 51621684 51621977 -175902601 + MLT1D LTR MaLR 21 321 -184 3557 120 11 35 chr3 51621977 51622517 -175902061 - MER1A DNA MER1_type 0 527 1 1643 193 71 62 chr3 51622517 51622704 -175901874 + MLT1D LTR MaLR 321 505 0 2244 92 0 7 chr3 51622850 51623143 -175901435 + AluY SINE Alu 20 310 -1 229 219 16 62 chr3 51623360 51623424 -175901154 - MIR SINE MIR -63 145 85 1692 204 16 6 chr3 51624766 51625129 -175899449 + MER63 DNA MER1_type 676 1042 -18 447 257 56 0 chr3 51625341 51625461 -175899117 + MIR SINE MIR 51 179 -54 234 275 58 109 chr3 51625465 51625603 -175898975 + MLT1J LTR MaLR 3 133 -378 1117 184 0 0 chr3 51625612 51625791 -175898787 - AluSg/x SINE Alu -2 308 130 828 261 61 55 chr3 51625802 51625953 -175898625 + MLT1J LTR MaLR 149 298 -213 2299 117 0 0 chr3 51625953 51626262 -175898316 + AluSx SINE Alu 1 309 -3 828 261 61 55 chr3 51626262 51626436 -175898142 + MLT1J LTR MaLR 298 476 -35 2963 135 20 14 chr3 51626443 51626954 -175897624 - L1MB4 LINE L1 0 6180 5667 654 247 31 26 chr3 51627121 51627315 -175897263 - MER63A DNA MER1_type -15 195 1 703 212 30 24 chr3 51627590 51627755 -175896823 + MLT1I LTR MaLR 244 409 0 879 261 145 48 chr3 51627762 51628532 -175896046 - L2 LINE L2 -1047 2267 1330 2182 126 3 3 chr3 51629011 51629313 -175895265 - AluSx SINE Alu -9 303 2 205 240 13 53 chr3 51629351 51629426 -175895152 - L2 LINE L2 -290 2982 2911 413 303 117 0 chr3 51630139 51630284 -175894294 - Charlie8 DNA MER1_type -2217 200 39 1010 201 28 26 chr3 51630520 51630821 -175893757 - MER2 DNA MER2_type 0 345 1 189 222 44 0 chr3 51632013 51632058 -175892520 + MIR SINE MIR 47 93 -169 377 309 50 69 chr3 51632065 51632441 -175892137 - LTR16C LTR ERVL -13 478 110 392 247 89 44 chr3 51632519 51632677 -175891901 + MIR SINE MIR 85 249 -13 475 305 37 42 chr3 51633090 51633280 -175891298 - MIR SINE MIR -6 256 68 333 155 0 0 chr3 51633436 51633494 -175891084 + CT-rich Low_complexity Low_complexity 2 59 0 276 216 80 45 chr3 51634248 51634336 -175890242 + HERVL LTR ERVL 4480 4570 -1084 435 210 0 0 chr3 51635674 51635755 -175888823 + MER5A DNA MER1_type 26 106 -83 492 281 31 25 chr3 51635980 51636140 -175888438 + MIR SINE MIR 81 241 -21 255 289 281 0 chr3 51636161 51636289 -175888289 - MIR SINE MIR -3 259 96 239 303 0 0 chr3 51636502 51636568 -175888010 + MIR SINE MIR 196 261 -1 631 270 56 0 chr3 51636568 51636838 -175887740 - L1M4 LINE L1 -860 5286 5002 231 200 20 0 chr3 51637045 51637095 -175887483 - L1MC/D LINE L1 -553 5780 5730 258 291 60 8 chr3 51637294 51637428 -175887150 - L1MC/D LINE L1 -684 5480 5340 375 23 0 0 chr3 51637595 51637639 -175886939 + (CA)n Simple_repeat Simple_repeat 1 44 0 835 270 50 21 chr3 51637689 51638127 -175886451 - LTR16C LTR ERVL 0 491 15 294 222 202 0 chr3 51638219 51638318 -175886260 - MIR SINE MIR -92 170 52 705 213 24 12 chr3 51638438 51638602 -175885976 - MLT1F1 LTR MaLR 0 567 402 1359 179 6 82 chr3 51638634 51638711 -175885867 + L1MD2 LINE L1 6055 6136 -223 1643 144 58 41 chr3 51638711 51639003 -175885575 + AluJb SINE Alu 1 297 -15 1359 179 6 82 chr3 51639003 51639042 -175885536 + L1MD2 LINE L1 6136 6176 -183 210 37 0 0 chr3 51639042 51639069 -175885509 + (GA)n Simple_repeat Simple_repeat 2 28 0 1359 179 6 82 chr3 51639069 51639281 -175885297 + L1MD2 LINE L1 6176 6359 0 * 1628 254 56 2 chr3 51639279 51639747 -175884831 + L1ME3A LINE L1 5678 6170 0 368 231 179 13 chr3 51639766 51639922 -175884656 - MIR SINE MIR -2 260 79 1192 271 43 27 chr3 51640753 51641193 -175883385 + LTR16A1 LTR ERVL 1 447 -10 309 317 41 35 chr3 51642018 51642163 -175882415 - L1MC/D LINE L1 -735 5624 5479 2164 169 16 126 chr3 51642163 51642736 -175881842 - MLT2B3 LTR ERVL -8 546 37 251 309 29 34 chr3 51642741 51642916 -175881662 - L1MC/D LINE L1 -2329 5479 5306 234 0 0 0 chr3 51642959 51642985 -175881593 + (T)n Simple_repeat Simple_repeat 1 26 0 775 180 92 87 chr3 51642996 51643202 -175881376 - MER58A DNA MER1_type -16 208 2 539 327 87 30 chr3 51643202 51643572 -175881006 - L1MC/D LINE L1 -879 5267 4877 305 248 244 107 chr3 51643732 51643994 -175880584 + L2 LINE L2 2966 3263 -50 225 240 320 40 chr3 51644922 51645022 -175879556 + MIR SINE MIR 21 148 -114 296 288 34 1 chr3 51647022 51647122 -175877456 + MIR SINE MIR 19 120 -88 265 317 67 10 chr3 51647573 51647677 -175876901 - MIR SINE MIR -90 172 63 210 160 0 0 chr3 51647887 51647937 -175876641 + GA-rich Low_complexity Low_complexity 1 50 0 264 212 61 0 chr3 51647941 51648007 -175876571 - L1ME3A LINE L1 -12 6158 6089 404 235 49 0 chr3 51649655 51649757 -175874821 + Charlie8 DNA MER1_type 87 193 -2224 220 199 0 6 chr3 51650154 51650214 -175874364 - MIR SINE MIR -64 144 107 2481 58 7 0 chr3 51650382 51650690 -175873888 + AluY SINE Alu 1 310 -1 2180 113 0 0 chr3 51652512 51652815 -175871763 + AluSg SINE Alu 1 303 0 187 284 30 0 chr3 51652863 51652930 -175871648 - MIR SINE MIR -72 136 68 332 302 191 0 chr3 51653475 51653601 -175870977 - MER5A DNA MER1_type -6 183 34 380 262 52 124 chr3 51653747 51653980 -175870598 - L2 LINE L2 -1 3271 3056 2047 225 94 17 chr3 51654210 51654295 -175870283 + MLT1E LTR MaLR 19 96 -497 2211 131 3 3 chr3 51654295 51654600 -175869978 - AluSx SINE Alu -7 305 1 2047 225 94 17 chr3 51654600 51655048 -175869530 + MLT1E LTR MaLR 96 593 0 2009 156 121 13 chr3 51655283 51655673 -175868905 + MSTB1 LTR MaLR 1 432 0 815 283 118 18 chr3 51656041 51656430 -175868148 + MLT1J LTR MaLR 84 511 0 256 253 99 33 chr3 51656489 51656580 -175867998 - L2 LINE L2 -2 3270 3174 2606 71 0 0 chr3 51656664 51656973 -175867605 + AluY SINE Alu 1 309 -2 415 240 115 0 chr3 51656974 51657078 -175867500 + MLT1I LTR MaLR 294 409 0 183 324 73 59 chr3 51657191 51657395 -175867183 - L2 LINE L2 -695 2619 2413 317 282 94 22 chr3 51657569 51657750 -175866828 + L2 LINE L2 2640 2833 -481 478 302 62 66 chr3 51659486 51659973 -175864605 - L2 LINE L2 -1 3312 2828 508 254 112 19 chr3 51660781 51660986 -175863592 + MLT1H1 LTR MaLR 327 550 -5 187 252 129 79 chr3 51661837 51661976 -175862602 - MIR3 SINE MIR -21 187 42 203 266 109 0 chr3 51662967 51663031 -175861547 - L2 LINE L2 -9 3263 3193 247 308 256 17 chr3 51664163 51664448 -175860130 + L2 LINE L2 563 779 -2535 2385 100 3 0 chr3 51664448 51664749 -175859829 - AluSx SINE Alu -10 302 1 247 308 256 17 chr3 51664749 51664768 -175859810 + L2 LINE L2 779 792 -2522 860 218 109 0 chr3 51664768 51664970 -175859608 + MER58A DNA MER1_type 1 224 0 247 308 256 17 chr3 51664970 51665366 -175859212 + L2 LINE L2 792 1432 -1882 2204 117 0 3 chr3 51665380 51665670 -175858908 - AluSg SINE Alu -21 289 1 581 288 107 34 chr3 51665814 51666168 -175858410 - LTR16C LTR ERVL -2 489 110 486 333 173 50 chr3 51666278 51667716 -175856862 + L2 LINE L2 1648 3270 -2 1195 276 80 3 chr3 51717808 51718160 -175806418 + LTR16C LTR ERVL 113 491 0 334 234 75 89 chr3 51719306 51719650 -175804928 - MLT1H LTR MaLR 0 549 69 213 39 0 0 chr3 51719787 51719813 -175804765 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 341 282 27 9 chr3 51719984 51720094 -175804484 + MIR SINE MIR 151 262 0 181 300 11 22 chr3 51720881 51720971 -175803607 + MIR SINE MIR 58 146 -116 231 329 0 12 chr3 51720987 51721072 -175803506 - L2 LINE L2 -5 3308 3225 570 243 52 35 chr3 51721075 51721248 -175803330 - MLT1J LTR MaLR -2 509 334 5918 118 22 0 chr3 51721277 51722439 -175802139 - L1PA16 LINE L1 -9 6157 4978 1753 200 2 33 chr3 51722084 51722713 -175801865 - L1P LINE L1 -814 5332 4770 20768 124 24 2 chr3 51722716 51725944 -175798634 + L1PA8A LINE L1 2106 5403 -743 4227 74 25 5 chr3 51726055 51726623 -175797955 + L1PA8A LINE L1 5553 6131 0 384 234 21 0 chr3 51726691 51726810 -175797768 - L1M4 LINE L1 -5081 1553 1344 * 2060 243 31 55 chr3 51726786 51727600 -175796978 - L1MEc LINE L1 -3222 3422 2629 3874 287 78 28 chr3 51728056 51729980 -175794598 - L1MEc LINE L1 -4337 2059 39 983 170 6 0 chr3 51730651 51730822 -175793756 + FRAM SINE Alu 1 163 -13 421 301 82 80 chr3 51730922 51731176 -175793402 + L2 LINE L2 2872 3129 -184 581 234 99 123 chr3 51731176 51731711 -175792867 + LTR33A LTR ERVL 2 523 0 421 301 82 80 chr3 51731711 51731894 -175792684 + L2 LINE L2 3129 3310 -3 1628 208 211 20 chr3 51732969 51733633 -175790945 + LTR50 LTR ERVL 2 792 -3 181 290 131 19 chr3 51734250 51734357 -175790221 - L2 LINE L2 -17 3255 3137 209 33 33 0 chr3 51734375 51734405 -175790173 + (TCTA)n Simple_repeat Simple_repeat 1 31 0 459 92 0 0 chr3 51734479 51734544 -175790034 + (TGGA)n Simple_repeat Simple_repeat 4 68 0 401 259 214 36 chr3 51735159 51735491 -175789087 - LTR16A LTR ERVL -46 404 14 679 214 48 91 chr3 51736220 51736430 -175788148 - MIR SINE MIR -15 247 47 254 212 101 50 chr3 51737093 51737192 -175787386 - LTR33 LTR ERVL -246 275 172 587 189 41 9 chr3 51737195 51737353 -175787225 - MLT1H LTR MaLR -229 202 1 266 279 0 0 chr3 51737432 51737511 -175787067 - MIR SINE MIR -168 94 16 657 268 88 12 chr3 51738914 51739323 -175785255 + LTR33 LTR ERVL 20 521 0 674 111 0 30 chr3 51739537 51739636 -175784942 + AluJ/FLAM SINE Alu 2 97 -215 238 274 16 0 chr3 51740114 51740176 -175784402 - L2 LINE L2 -279 2993 2931 623 240 52 16 chr3 51740302 51740494 -175784084 - LTR16A1 LTR ERVL -2 455 257 408 172 0 46 chr3 51740521 51740613 -175783965 + AluJ/FLAM SINE Alu 1 67 -235 202 212 0 30 chr3 51742435 51742501 -175782077 + GA-rich Low_complexity Low_complexity 1 64 0 297 326 31 39 chr3 51742525 51742654 -175781924 - MIR3 SINE MIR -32 176 49 418 218 70 3 chr3 51743735 51743860 -175780718 - MIR SINE MIR -52 156 24 200 222 205 51 chr3 51744471 51744588 -175779990 - L3 LINE CR1 -274 1303 1169 932 258 57 65 chr3 51745732 51746259 -175778319 - LTR33A LTR ERVL 0 523 1 266 376 26 0 chr3 51746270 51746387 -175778191 + L3 LINE CR1 1092 1211 -366 273 209 70 35 chr3 51746388 51746474 -175778104 + L3 LINE CR1 1347 1435 -142 258 247 41 41 chr3 51746645 51746742 -175777836 - MLT1H LTR MaLR -21 528 432 376 237 28 83 chr3 51746872 51747019 -175777559 - MLT1H LTR MaLR -196 235 82 601 307 80 8 chr3 51747123 51747361 -175777217 + MIR SINE MIR 2 256 -6 382 337 60 5 chr3 51748008 51748192 -175776386 + MIR SINE MIR 5 198 -64 449 258 137 57 chr3 51748454 51748702 -175775876 - LTR16C LTR ERVL 0 491 224 194 237 153 76 chr3 51749226 51749344 -175775234 + MIR SINE MIR 8 135 -73 345 308 88 25 chr3 51750644 51750803 -175773775 - L1ME4a LINE L1 -6 6115 5947 320 226 92 152 chr3 51750803 51750857 -175773721 - MLT1K LTR MaLR -2 586 530 2293 160 8 25 chr3 51750857 51751251 -175773327 + MLT1B LTR MaLR 4 390 0 320 226 92 152 chr3 51751251 51751479 -175773099 - MLT1K LTR MaLR -58 530 321 346 301 0 0 chr3 51751652 51751745 -175772833 - MIR SINE MIR -89 173 81 1364 143 49 19 chr3 51751814 51752105 -175772473 - AluJb SINE Alu 0 312 40 523 212 9 0 chr3 51752990 51753103 -175771475 + MER96B DNA MER1_type? 4 117 -300 2391 117 24 56 chr3 51753265 51753674 -175770904 - MLT2D LTR ERVL 0 414 19 224 378 44 0 chr3 51753766 51753856 -175770722 + L2 LINE L2 3168 3261 -11 750 269 76 25 chr3 51755295 51755611 -175768967 + L1MCc LINE L1 25 356 -6067 2225 67 6 25 chr3 51755634 51755948 -175768630 + AluY SINE Alu 1 308 -3 1949 138 16 19 chr3 51755950 51756268 -175768310 + MLT1A1 LTR MaLR 49 365 0 432 287 30 36 chr3 51756268 51756435 -175768143 + L1MCc LINE L1 353 518 -5905 643 246 66 62 chr3 51756658 51756914 -175767664 + L1MCc LINE L1 825 1081 -5342 * 1480 251 71 2 chr3 51756906 51757317 -175767261 + L1ME1 LINE L1 5727 6165 -1 352 262 131 61 chr3 51757598 51757812 -175766766 - MLT1K LTR MaLR -192 396 168 314 359 157 36 chr3 51757952 51758233 -175766345 - L2 LINE L2 -5 3267 2953 560 314 131 46 chr3 51758453 51759058 -175765520 - L2 LINE L2 -2127 1187 532 312 255 0 85 chr3 51759397 51759413 -175765165 - L1MC4 LINE L1 -1333 6709 6693 1982 84 0 15 chr3 51759413 51759676 -175764902 + AluSx SINE Alu 35 293 -19 312 255 0 85 chr3 51759676 51759765 -175764813 - L1MC4 LINE L1 -1349 6693 6613 409 233 26 0 chr3 51759813 51759929 -175764649 - MER113 DNA MER1_type? -402 119 1 203 322 0 0 chr3 51759931 51759990 -175764588 - MIR SINE MIR -66 196 138 477 319 54 0 chr3 51761758 51761924 -175762654 + MIR SINE MIR 9 183 -79 412 280 171 18 chr3 51761983 51762376 -175762202 + LTR33 LTR ERVL 3 455 -66 194 194 15 0 chr3 51763178 51763245 -175761333 + (CA)n Simple_repeat Simple_repeat 1 68 0 222 37 0 0 chr3 51763597 51763624 -175760954 + (T)n Simple_repeat Simple_repeat 1 27 0 1841 261 107 16 chr3 51764582 51765337 -175759241 - HAL1 LINE L1 0 2507 1684 6847 89 15 8 chr3 51765458 51766415 -175758163 + L1MA2 LINE L1 5342 6304 0 381 232 24 32 chr3 51766451 51766576 -175758002 - HAL1 LINE L1 -1137 1370 1247 793 311 150 31 chr3 51766769 51767415 -175757163 - HAL1 LINE L1 -1568 939 217 387 262 166 0 chr3 51767545 51767690 -175756888 - MIR SINE MIR -87 175 7 801 209 11 28 chr3 51767961 51768138 -175756440 + MER5B DNA MER1_type 1 174 -4 234 266 419 0 chr3 51768150 51768225 -175756353 - MER5A DNA MER1_type 0 189 147 2284 151 16 14 chr3 51768225 51768589 -175755989 + MLT1A1 LTR MaLR 1 365 0 234 266 419 0 chr3 51768589 51768637 -175755941 - MER5A DNA MER1_type -42 147 14 807 258 172 29 chr3 51770505 51771064 -175753514 + L1ME4a LINE L1 5483 6121 0 22 0 0 0 chr3 51771325 51771347 -175753231 + GC_rich Low_complexity Low_complexity 1 22 0 491 272 141 15 chr3 51771364 51771570 -175753008 + MIR SINE MIR 9 240 -22 298 275 25 0 chr3 51771696 51771776 -175752802 + (CG)n Simple_repeat Simple_repeat 2 83 0 394 87 116 0 chr3 51772617 51772686 -175751892 + MADE1 DNA Mariner 4 80 0 535 291 106 0 chr3 51773348 51773537 -175751041 - MIR SINE MIR 0 262 54 289 284 138 0 chr3 51774225 51774341 -175750237 - MIR SINE MIR -77 185 54 279 0 0 0 chr3 51775628 51775659 -175748919 + (A)n Simple_repeat Simple_repeat 1 31 0 281 252 65 41 chr3 51776252 51776375 -175748203 + MLT1J LTR MaLR 84 209 -302 667 266 34 34 chr3 51776375 51776482 -175748096 - LTR16C LTR ERVL 0 491 382 838 258 115 48 chr3 51776482 51776917 -175747661 - LTR16B LTR ERVL 0 464 1 667 266 34 34 chr3 51776917 51777016 -175747562 - LTR16C LTR ERVL -108 383 285 2273 85 0 3 chr3 51777163 51777474 -175747104 - AluSq SINE Alu 0 310 1 24 53 0 0 chr3 51777988 51778026 -175746552 + AT_rich Low_complexity Low_complexity 1 38 0 289 269 0 5 chr3 51778052 51778128 -175746450 - MLT1A1 LTR MaLR 0 390 291 189 0 0 0 chr3 51778128 51778149 -175746429 + (T)n Simple_repeat Simple_repeat 1 21 0 250 236 38 75 chr3 51778150 51778256 -175746322 - MLT1J2 LTR MaLR -70 380 279 * 635 248 37 8 chr3 51778241 51778415 -175746163 - MLT1J1 LTR MaLR -287 159 1 1851 186 0 7 chr3 51778688 51778995 -175745583 + MLT1A1 LTR MaLR 1 305 -60 2070 105 4 0 chr3 51778995 51779261 -175745317 + AluY SINE Alu 1 267 -44 646 245 32 7 chr3 51779416 51779571 -175745007 + MLT1J1 LTR MaLR 1 159 -287 538 236 29 52 chr3 51779575 51779749 -175744829 + MLT1J2 LTR MaLR 279 448 -2 469 245 80 18 chr3 51780146 51780309 -175744269 - MIR SINE MIR -61 201 29 307 235 279 0 chr3 51781019 51781155 -175743423 - MIR SINE MIR 0 262 89 1996 162 164 9 chr3 51781155 51781587 -175742991 + MLT1D LTR MaLR 1 499 -6 608 285 141 26 chr3 51781900 51782536 -175742042 + L1M3 LINE L1 4860 5584 -596 213 39 0 0 chr3 51783286 51783312 -175741266 + (A)n Simple_repeat Simple_repeat 1 26 0 196 238 206 0 chr3 51783403 51783466 -175741112 + L2 LINE L2 3238 3313 0 418 253 89 20 chr3 51783569 51783715 -175740863 - LTR33A LTR ERVL -158 365 210 346 271 0 0 chr3 51783987 51784072 -175740506 - MIR SINE MIR -112 150 66 998 249 129 32 chr3 51784826 51785291 -175739287 - LTR33A LTR ERVL -6 517 8 409 227 53 53 chr3 51786222 51786354 -175738224 - LTR16C LTR ERVL 0 491 360 1032 251 82 22 chr3 51786546 51786948 -175737630 + LTR16A LTR ERVL 25 450 0 2063 133 0 31 chr3 51787851 51788173 -175736405 + AluSx SINE Alu 1 312 0 21 0 0 0 chr3 51789690 51789711 -175734867 + AT_rich Low_complexity Low_complexity 1 21 0 276 233 56 0 chr3 51789831 51789921 -175734657 + MIR SINE MIR 128 222 -40 508 287 83 70 chr3 51791043 51791527 -175733051 - MLT1J LTR MaLR -19 492 3 298 214 71 10 chr3 51791528 51791626 -175732952 - MIR SINE MIR -103 159 56 1980 153 125 13 chr3 51791967 51792352 -175732226 + MSTA LTR MaLR 1 428 0 1765 174 13 10 chr3 51792637 51792942 -175731636 - AluJo SINE Alu -6 306 1 264 140 0 70 chr3 51793543 51793600 -175730978 - HsTC2 DNA Tc2 -1845 53 1 479 275 73 66 chr3 51793701 51793974 -175730604 + L1ME LINE L1 5478 5752 -369 1821 160 24 0 chr3 51794006 51794293 -175730285 - AluSx SINE Alu -18 294 1 1804 196 28 6 chr3 51794892 51795249 -175729329 + MLT1A1 LTR MaLR 1 365 0 416 264 129 22 chr3 51795474 51795652 -175728926 + LTR50 LTR ERVL 3 199 -596 510 229 49 14 chr3 51795824 51795968 -175728610 + LTR33A LTR ERVL 375 523 0 477 0 0 0 chr3 51796636 51796689 -175727889 + (CA)n Simple_repeat Simple_repeat 1 53 0 186 250 0 0 chr3 51796919 51796959 -175727619 + L2 LINE L2 3269 3308 -5 2544 253 112 42 chr3 51797815 51799214 -175725364 - HAL1 LINE L1 -39 2468 971 247 245 0 0 chr3 51799874 51799923 -175724655 - HAL1 LINE L1 -2422 85 37 1560 162 28 33 chr3 51799932 51800195 -175724383 + L1M4 LINE L1 5221 5472 -706 297 0 0 0 chr3 51800195 51800228 -175724350 + (CA)n Simple_repeat Simple_repeat 2 34 0 1560 162 28 33 chr3 51800228 51800320 -175724258 + L1M4 LINE L1 5472 5563 -615 382 288 39 128 chr3 51800384 51800742 -175723836 - L2 LINE L2 -1 3271 2946 1383 177 0 5 chr3 51800767 51800987 -175723591 + AluJb SINE Alu 84 302 -10 301 355 147 7 chr3 51801000 51801414 -175723164 - L2 LINE L2 -385 2929 2458 190 211 0 35 chr3 51802615 51802672 -175721906 + MIR SINE MIR 156 210 -52 3361 195 70 38 chr3 51802904 51803677 -175720901 - MER21B LTR ERV1 -52 811 14 448 215 33 66 chr3 51803788 51803909 -175720669 - MLT1L LTR MaLR -151 464 348 265 241 13 13 chr3 51804070 51804149 -175720429 + (TA)n Simple_repeat Simple_repeat 1 79 0 29 94 0 0 chr3 51804181 51804266 -175720312 + AT_rich Low_complexity Low_complexity 1 85 0 638 228 59 31 chr3 51804874 51805128 -175719450 + L1MC4 LINE L1 7687 7947 -95 306 0 0 0 chr3 51805276 51805310 -175719268 + (CA)n Simple_repeat Simple_repeat 1 34 0 291 282 0 10 chr3 51805310 51805413 -175719165 + L1MC4 LINE L1 7940 8041 -1 641 307 56 14 chr3 51806266 51806621 -175717957 - LTR33 LTR ERVL -151 370 1 341 151 41 41 chr3 51806622 51806695 -175717883 + MIR SINE MIR 120 192 -70 4959 165 60 9 chr3 51806848 51808245 -175716333 + L1MB7 LINE L1 4707 6184 0 574 276 124 22 chr3 51808238 51808465 -175716113 + L1MEd LINE L1 945 1147 -1343 * 2441 61 10 3 chr3 51808465 51808762 -175715816 + AluY SINE Alu 1 299 -12 574 276 124 22 chr3 51808762 51809055 -175715523 + L1MEd LINE L1 1147 1600 -890 186 269 0 0 chr3 51809384 51809436 -175715142 + L2 LINE L2 3262 3313 0 231 318 0 0 chr3 51809776 51809842 -175714736 + GA-rich Low_complexity Low_complexity 2 67 0 225 330 92 0 chr3 51809922 51810031 -175714547 + L2 LINE L2 2941 3059 -213 360 190 0 0 chr3 51810038 51810117 -175714461 + (CA)n Simple_repeat Simple_repeat 1 79 0 2464 61 0 3 chr3 51810204 51810500 -175714078 + AluY SINE Alu 1 295 -16 191 331 177 15 chr3 51810507 51810637 -175713941 + L2 LINE L2 3117 3267 -5 183 42 0 0 chr3 51810898 51810922 -175713656 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2251 126 0 0 chr3 51811484 51811794 -175712784 + AluSx SINE Alu 1 310 -2 2340 142 30 5 chr3 51812278 51812680 -175711898 - L1MB4 LINE L1 0 6180 5769 32292 100 7 13 chr3 51812681 51818259 -175706319 - L1PA7 LINE L1 -5 6149 606 * 39234 57 11 12 chr3 51818254 51824757 -175699821 - L1PA4 LINE L1 -3 6467 1 1291 138 18 9 chr3 51824759 51824976 -175699602 - L1MB4 LINE L1 -394 5786 5568 257 129 40 66 chr3 51825161 51825248 -175699330 - L1M3 LINE L1 -568 5612 5523 384 260 188 20 chr3 51826806 51827192 -175697386 - LTR16C LTR ERVL 0 491 5 190 71 0 0 chr3 51827197 51827225 -175697353 + MIR SINE MIR 70 97 -165 301 266 47 39 chr3 51827794 51827922 -175696656 - LTR16C LTR ERVL -124 367 239 2486 87 0 0 chr3 51828447 51828758 -175695820 + AluY SINE Alu 1 311 0 1247 242 78 55 chr3 51828800 51829276 -175695302 - MLT1J LTR MaLR 0 511 25 708 275 132 36 chr3 51829458 51829906 -175694672 + LTR16C LTR ERVL 1 491 0 182 395 0 23 chr3 51829914 51830000 -175694578 - MIR SINE MIR -105 103 20 297 264 192 16 chr3 51830880 51831005 -175693573 - MIR SINE MIR -62 146 1 590 206 28 28 chr3 51832425 51832566 -175692012 - MLT1H LTR MaLR -408 141 1 1867 182 49 17 chr3 51832669 51833127 -175691451 + L1MEc LINE L1 2063 2479 -3947 780 287 79 38 chr3 51833869 51834263 -175690315 - LTR16C LTR ERVL -18 473 64 822 173 93 110 chr3 51835057 51835448 -175689130 - LTR16A1 LTR ERVL -22 435 2 275 341 63 8 chr3 51837512 51837638 -175686940 - Charlie8 DNA MER1_type -2259 158 26 777 214 60 0 chr3 51838534 51838702 -175685876 + MER45A DNA AcHobo 1 178 0 214 296 127 0 chr3 51838764 51838835 -175685743 + MIR SINE MIR 107 186 -76 355 294 145 9 chr3 51839038 51839252 -175685326 - MIR SINE MIR 0 262 20 273 208 0 0 chr3 51839409 51839457 -175685121 + MER94 DNA DNA 4 51 -83 458 208 14 42 chr3 51840070 51840214 -175684364 - L1MC4 LINE L1 -1 8041 7902 531 0 0 0 chr3 51840218 51840277 -175684301 + (TG)n Simple_repeat Simple_repeat 2 60 0 392 300 82 37 chr3 51840291 51840596 -175683982 - LTR16B LTR ERVL -46 404 37 1187 232 24 72 chr3 51841074 51841332 -175683246 + LTR16C LTR ERVL 98 330 -161 1488 150 11 27 chr3 51841332 51841592 -175682986 + AluJo SINE Alu 1 256 -56 1187 232 24 72 chr3 51841592 51841747 -175682831 + LTR16C LTR ERVL 330 491 0 345 264 47 9 chr3 51842051 51842157 -175682421 - L2 LINE L2 -3 3310 3201 1966 94 4 11 chr3 51842448 51842734 -175681844 - AluSp SINE Alu 0 313 44 412 285 73 22 chr3 51843091 51843228 -175681350 + MIR SINE MIR 9 152 -110 245 310 60 0 chr3 51843264 51843380 -175681198 - L2 LINE L2 -756 2558 2436 * 421 221 0 39 chr3 51843357 51843484 -175681094 - MIR SINE MIR -1 261 140 498 198 72 9 chr3 51843784 51843895 -175680683 + LTR16C LTR ERVL 373 490 -1 231 245 265 0 chr3 51843896 51843998 -175680580 - MIR SINE MIR -116 146 18 784 124 142 30 chr3 51844007 51844176 -175680402 - MER5A DNA MER1_type 0 189 2 198 308 66 22 chr3 51844326 51844417 -175680161 - L2 LINE L2 -9 3304 3210 1480 241 50 3 chr3 51845669 51846009 -175678569 + LTR16C LTR ERVL 136 491 0 1420 263 149 29 chr3 51847859 51848744 -175675834 - HAL1 LINE L1 -546 1961 971 416 264 129 22 chr3 51849685 51849863 -175674715 + LTR50 LTR ERVL 3 199 -596 510 229 49 14 chr3 51850035 51850179 -175674399 + LTR33A LTR ERVL 375 523 0 477 0 0 0 chr3 51850847 51850900 -175673678 + (CA)n Simple_repeat Simple_repeat 1 53 0 186 250 0 0 chr3 51851130 51851170 -175673408 + L2 LINE L2 3269 3308 -5 717 243 56 56 chr3 51852026 51852363 -175672215 - HAL1 LINE L1 -39 2468 2132 2121 121 27 0 chr3 51854864 51855162 -175669416 - AluSx SINE Alu -6 306 1 324 155 42 28 chr3 51855444 51855515 -175669063 + MER5A DNA MER1_type 35 106 -83 371 255 28 83 chr3 51855800 51856016 -175668562 + HAL1 LINE L1 2290 2493 -14 216 0 0 0 chr3 51856099 51856123 -175668455 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 29 0 0 0 chr3 51856308 51856337 -175668241 + AT_rich Low_complexity Low_complexity 1 29 0 387 287 123 58 chr3 51856551 51856861 -175667717 - MLT1H LTR MaLR -211 338 9 1156 225 0 0 chr3 51856874 51857083 -175667495 + MER58A DNA MER1_type 1 209 -15 234 350 8 0 chr3 51857168 51857291 -175667287 - L1MC/D LINE L1 -1879 5929 5806 246 105 0 0 chr3 51857386 51857424 -175667154 + (CA)n Simple_repeat Simple_repeat 1 38 0 3942 252 27 23 chr3 51859037 51859465 -175665113 - L1M4 LINE L1 -1778 4368 3943 2426 79 0 0 chr3 51859465 51859757 -175664821 + AluY SINE Alu 1 292 -19 3942 252 27 23 chr3 51859757 51860554 -175664024 - L1M4 LINE L1 -2203 3943 3138 370 239 94 12 chr3 51860699 51860886 -175663692 - L1P5 LINE L1 -695 5461 5255 732 304 68 28 chr3 51861130 51861746 -175662832 - L1M4 LINE L1 -1191 4955 4315 4107 92 47 10 chr3 51861867 51862442 -175662136 + Tigger1 DNA MER2_type 1823 2418 0 1949 203 207 29 chr3 51862440 51862967 -175661611 - MLT1E1 LTR MaLR 0 654 34 * 1955 145 7 7 chr3 51863198 51863487 -175661091 - AluSx SINE Alu -23 289 1 1861 139 37 0 chr3 51864015 51864311 -175660267 - AluSx SINE Alu 0 306 1 248 325 108 13 chr3 51864409 51864566 -175660012 - HAL1 LINE L1 -738 1769 1598 720 232 71 12 chr3 51865842 51866010 -175658568 + MER45A DNA AcHobo 1 178 0 1021 144 104 25 chr3 51866689 51866890 -175657688 - L1MB4 LINE L1 -340 5840 5624 4385 141 60 42 chr3 51867222 51868074 -175656504 - L1MB4 LINE L1 -2 6178 5312 * 6333 130 33 5 chr3 51868068 51869451 -175655127 - L1MA7 LINE L1 -23 6472 5052 3803 60 10 4 chr3 51869454 51869955 -175654623 - L1MA1 LINE L1 -191 6111 5608 11295 207 58 45 chr3 51869960 51870644 -175653934 - L1MA7 LINE L1 -1302 5048 4375 6887 73 22 0 chr3 51870644 51871872 -175652706 - L1PA10 LINE L1 0 6168 4936 11295 207 58 45 chr3 51871872 51871952 -175652626 - L1MA7 LINE L1 -1975 4375 4298 2315 140 15 82 chr3 51871952 51872415 -175652163 + MSTB1 LTR MaLR 1 432 0 11295 207 58 45 chr3 51872415 51872771 -175651807 - L1MA7 LINE L1 -2052 4298 3948 2009 116 0 50 chr3 51872771 51873089 -175651489 - AluSc SINE Alu -7 302 1 11295 207 58 45 chr3 51873089 51874877 -175649701 - L1MA7 LINE L1 -2402 3948 2387 1764 118 4 21 chr3 51874877 51875156 -175649422 - L1PA13 LINE L1 -2 6161 5888 11295 207 58 45 chr3 51875156 51876954 -175647624 - L1MA7 LINE L1 -3963 2387 615 817 241 46 19 chr3 51876955 51877216 -175647362 - L1M4 LINE L1 -816 5330 5063 5921 240 63 34 chr3 51877313 51878304 -175646274 + L1MD2 LINE L1 2260 3220 -2926 1539 151 85 0 chr3 51878304 51878600 -175645978 + AluJo SINE Alu 1 319 0 5921 240 63 34 chr3 51878600 51879438 -175645140 + L1MD2 LINE L1 3220 4159 -1987 1477 18 0 0 chr3 51879438 51879607 -175644971 + AluY SINE Alu 143 311 0 5921 240 63 34 chr3 51879607 51879775 -175644803 + L1MD2 LINE L1 4159 4320 -1826 4903 175 30 63 chr3 51879765 51881318 -175643260 + L1MD2 LINE L1 4819 6339 -20 * 21 0 0 0 chr3 51881357 51881378 -175643200 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 51885894 51885923 -175638655 + GC_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 51886041 51886063 -175638515 + GC_rich Low_complexity Low_complexity 1 22 0 33 0 0 0 chr3 51887180 51887213 -175637365 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr3 51888406 51888429 -175636149 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr3 51890178 51890207 -175634371 + (T)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr3 51890487 51890510 -175634068 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr3 51890891 51890920 -175633658 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1745 125 43 46 chr3 51893489 51893792 -175630786 - AluSx SINE Alu -10 302 1 322 225 141 52 chr3 51895587 51895733 -175628845 - L1MDa LINE L1 -2962 3578 1985 242 114 0 23 chr3 51895744 51895788 -175628790 + (TCC)n Simple_repeat Simple_repeat 3 45 0 933 191 10 26 chr3 51895968 51896162 -175628416 + MER3 DNA MER1_type 19 209 0 2180 93 0 3 chr3 51896350 51896641 -175627937 - AluSc SINE Alu -19 290 1 202 330 92 9 chr3 51897595 51897704 -175626874 + MER5B DNA MER1_type 27 144 -34 1736 166 10 10 chr3 51897708 51898016 -175626562 - AluJb SINE Alu 0 312 5 583 251 51 8 chr3 51901954 51902154 -175622424 - MIR SINE MIR -48 214 5 877 238 58 14 chr3 51902833 51903056 -175621522 + MIR SINE MIR 13 245 -17 24 0 0 0 chr3 51905038 51905062 -175619516 + AT_rich Low_complexity Low_complexity 1 24 0 332 200 12 0 chr3 51908157 51908237 -175616341 + CT-rich Low_complexity Low_complexity 4 84 0 22 0 0 0 chr3 51909511 51909533 -175615045 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 51910410 51910432 -175614146 + AT_rich Low_complexity Low_complexity 1 22 0 316 186 0 57 chr3 51913490 51913560 -175611018 + MER116 DNA Mariner 1 66 -14 812 300 127 33 chr3 51913593 51914000 -175610578 + L2 LINE L2 2705 3173 -140 705 168 8 30 chr3 51914000 51914131 -175610447 - FLAM_A SINE Alu -4 129 2 812 300 127 33 chr3 51914131 51914282 -175610296 + L2 LINE L2 3173 3308 -5 610 185 89 34 chr3 51914842 51914988 -175609590 - MIR SINE MIR -49 213 60 188 341 119 23 chr3 51915377 51915553 -175609025 + MIR SINE MIR 64 256 -6 221 328 26 26 chr3 51917226 51917342 -175607236 - L3b LINE CR1 -278 1305 1190 1185 156 211 4 chr3 51918138 51918375 -175606203 - AluJb SINE Alu -26 286 1 255 215 50 107 chr3 51918375 51918496 -175606082 - MER5A DNA MER1_type -40 149 36 205 307 13 13 chr3 51918811 51918886 -175605692 + L2 LINE L2 2978 3052 -220 222 204 108 65 chr3 51918920 51919013 -175605565 + L2 LINE L2 3200 3296 -17 338 306 65 0 chr3 51919180 51919304 -175605274 + L2 LINE L2 2354 2485 -829 231 88 0 0 chr3 51919753 51919787 -175604791 + (TG)n Simple_repeat Simple_repeat 1 34 0 304 346 37 9 chr3 51920402 51920509 -175604069 + L2 LINE L2 3125 3234 -38 393 102 0 0 chr3 51920525 51920584 -175603994 + (TGGA)n Simple_repeat Simple_repeat 1 59 0 186 43 0 0 chr3 51920586 51920609 -175603969 + (GGAA)n Simple_repeat Simple_repeat 3 25 0 261 0 0 0 chr3 51920774 51920803 -175603775 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1169 166 57 106 chr3 51920805 51920958 -175603620 - AluSx SINE Alu -15 287 155 216 0 0 0 chr3 51920958 51920982 -175603596 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1169 166 57 106 chr3 51920982 51921129 -175603449 - AluSx SINE Alu -147 155 2 1495 142 0 0 chr3 51921132 51921358 -175603220 - AluSg/x SINE Alu -9 303 78 1548 154 71 8 chr3 51922117 51922408 -175602170 + AluJb SINE Alu 1 308 0 784 285 111 24 chr3 51922752 51923177 -175601401 - L1ME4a LINE L1 -1 6120 5659 286 241 121 0 chr3 51923196 51923279 -175601299 - L1ME3 LINE L1 0 6162 6070 339 315 69 27 chr3 51923351 51923540 -175601038 - MIR SINE MIR -37 225 33 209 338 120 8 chr3 51923984 51924117 -175600461 - MIR3 SINE MIR -28 180 33 319 275 60 78 chr3 51924681 51924848 -175599730 + MIR SINE MIR 99 262 0 313 252 206 9 chr3 51925094 51925201 -175599377 + L2 LINE L2 3143 3270 -2 1597 196 0 3 chr3 51925356 51925667 -175598911 - AluJb SINE Alu -2 310 1 681 289 148 27 chr3 51926096 51926825 -175597753 + L1MC/D LINE L1 3869 4703 -1443 622 278 69 56 chr3 51927013 51927410 -175597168 + L1MC/D LINE L1 4914 5304 -1101 2257 93 0 7 chr3 51927410 51927720 -175596858 + AluSq SINE Alu 3 310 -3 622 278 69 56 chr3 51927720 51928179 -175596399 + L1MC/D LINE L1 5304 5798 -607 302 243 56 19 chr3 51928516 51928623 -175595955 + L1MC4 LINE L1 7916 8026 -16 325 239 34 29 chr3 51928844 51928967 -175595611 - MLT1L LTR MaLR -304 284 160 233 173 62 62 chr3 51929076 51929157 -175595421 - MLT1L LTR MaLR -532 83 3 411 316 60 28 chr3 51929226 51929476 -175595102 - L1ME LINE L1 -580 5582 5325 203 333 30 0 chr3 51929711 51929777 -175594801 + MIR3 SINE MIR 129 196 -12 2140 67 0 67 chr3 51931363 51931679 -175592899 + AluY SINE Alu 1 295 -16 22 0 0 0 chr3 51932136 51932158 -175592420 + AT_rich Low_complexity Low_complexity 1 22 0 255 158 341 0 chr3 51935534 51935616 -175588962 + MER117 DNA MER1_type 51 160 -37 244 175 21 113 chr3 51936883 51936980 -175587598 + L2 LINE L2 3223 3310 -3 200 270 14 68 chr3 51937356 51937430 -175587148 - MIR3 SINE MIR -21 187 118 184 263 158 13 chr3 51939404 51939480 -175585098 - MIR SINE MIR -129 133 47 481 304 57 44 chr3 51939602 51939829 -175584749 + MIR SINE MIR 13 242 -20 312 225 14 14 chr3 51941624 51941695 -175582883 - MER117 DNA MER1_type -112 85 15 * 377 235 67 34 chr3 51941682 51941801 -175582777 + MER117 DNA MER1_type 74 196 -1 24 32 0 0 chr3 51941848 51941879 -175582699 + AT_rich Low_complexity Low_complexity 1 31 0 1752 149 0 14 chr3 51941973 51942262 -175582316 + AluJb SINE Alu 5 289 -23 196 297 27 14 chr3 51944062 51944136 -175580442 + L2 LINE L2 2507 2581 -733 203 200 22 0 chr3 51947040 51947085 -175577493 + A-rich Low_complexity Low_complexity 4 49 0 387 200 0 0 chr3 51947825 51947905 -175576673 + L1MA8 LINE L1 6211 6290 -1 1004 238 97 73 chr3 51950486 51951023 -175573555 - MER34C LTR ERV1 0 585 36 352 265 10 49 chr3 51952976 51953078 -175571500 + MER5A DNA MER1_type 17 114 -75 710 269 18 0 chr3 51953237 51953404 -175571174 - MER91A DNA MER1_type -26 170 1 265 271 71 0 chr3 51953521 51953606 -175570972 - MIR SINE MIR -123 139 49 621 261 73 76 chr3 51954245 51954575 -175570003 - MLT1H LTR MaLR -198 351 23 214 303 0 15 chr3 51955128 51955194 -175569384 + MER5B DNA MER1_type 6 70 -108 2154 121 0 0 chr3 51955365 51955671 -175568907 - AluSx SINE Alu -6 306 1 416 299 28 14 chr3 51956009 51956153 -175568425 + MIR3 SINE MIR 20 165 -43 285 273 30 0 chr3 51956182 51956248 -175568330 + MER5A DNA MER1_type 51 118 -71 387 263 26 50 chr3 51957384 51957506 -175567072 - MIR SINE MIR -93 115 5 247 244 37 37 chr3 51957558 51957640 -175566938 + L2 LINE L2 2980 3061 -211 504 114 0 0 chr3 51957904 51957974 -175566604 + U6 snRNA snRNA 35 104 -3 374 270 43 9 chr3 51958564 51958679 -175565899 + MIR SINE MIR 123 241 -21 180 0 0 0 chr3 51958756 51958776 -175565802 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 516 206 371 29 chr3 51959976 51960248 -175564330 - LTR16C LTR ERVL 0 491 127 2361 147 59 5 chr3 51960404 51960825 -175563753 + L1MB3 LINE L1 5721 6164 -19 304 284 43 60 chr3 51960828 51960944 -175563634 + L1MCa LINE L1 1996 2109 -4317 381 261 61 56 chr3 51961466 51961646 -175562932 - L2 LINE L2 -556 2758 2578 367 200 33 11 chr3 51963038 51963128 -175561450 - LTR33 LTR ERVL -7 514 423 314 244 8 67 chr3 51963247 51963366 -175561212 - LTR33 LTR ERVL -402 119 8 218 31 0 31 chr3 51963621 51963653 -175560925 + (GAAAA)n Simple_repeat Simple_repeat 5 35 0 305 218 103 0 chr3 51963992 51964079 -175560499 - MER5A DNA MER1_type -85 104 9 21 0 0 0 chr3 51964851 51964872 -175559706 + AT_rich Low_complexity Low_complexity 1 21 0 355 343 20 14 chr3 51965268 51965414 -175559164 - MIR SINE MIR 0 262 116 621 320 16 5 chr3 51966449 51966643 -175557935 - MIR SINE MIR -51 211 16 279 314 59 35 chr3 51967394 51967563 -175557015 - MIR SINE MIR -70 192 20 1771 154 0 13 chr3 51968440 51968738 -175555840 - AluJo SINE Alu -1 311 18 2356 66 0 0 chr3 51969173 51969462 -175555116 + AluY SINE Alu 1 289 -22 680 177 29 57 chr3 51970029 51970204 -175554374 + MER5B DNA MER1_type 9 178 0 192 254 84 28 chr3 51970994 51971065 -175553513 + MIR SINE MIR 156 230 -32 3291 203 78 11 chr3 51971822 51973023 -175551555 - L1MD2 LINE L1 -477 6276 4972 2344 93 3 0 chr3 51973023 51973335 -175551243 + AluSp SINE Alu 1 313 0 3291 203 78 11 chr3 51973335 51973505 -175551073 - L1MD2 LINE L1 -1781 4972 4815 2276 236 51 23 chr3 51973512 51974083 -175550495 - MER21B LTR ERV1 -6 857 271 1059 129 0 0 chr3 51974147 51974334 -175550244 + AluSg/x SINE Alu 131 317 0 551 225 124 0 chr3 51974371 51974500 -175550078 - MER21B LTR ERV1 -698 165 21 324 191 0 44 chr3 51974602 51974670 -175549908 - MER21B LTR ERV1 -773 90 26 231 36 0 0 chr3 51974670 51974698 -175549880 + (TA)n Simple_repeat Simple_repeat 2 29 0 3871 219 77 40 chr3 51974698 51975528 -175549050 - L1MD2 LINE L1 -1797 4743 3848 2304 73 0 26 chr3 51975528 51975841 -175548737 + AluY SINE Alu 1 305 -6 3871 219 77 40 chr3 51975841 51976299 -175548279 - L1MD2 LINE L1 -2692 3848 3408 820 198 38 57 chr3 51976302 51976514 -175548064 - L1MD2 LINE L1 -6208 332 125 374 311 62 12 chr3 51976814 51977055 -175547523 - L1MEc LINE L1 -2190 4025 3773 1039 277 126 64 chr3 51977223 51978478 -175546100 - L1MEc LINE L1 -2441 3774 2349 330 338 87 34 chr3 51978487 51978753 -175545825 - L1MEc LINE L1 -4044 2352 2073 1442 162 132 4 chr3 51978765 51979031 -175545547 - AluJb SINE Alu -1 301 2 246 329 126 13 chr3 51979151 51979382 -175545196 - HAL1 LINE L1 -1425 1082 826 1303 191 112 101 chr3 51981103 51981222 -175543356 - L1MC4 LINE L1 -11 8031 7915 459 0 0 0 chr3 51981222 51981273 -175543305 + (CA)n Simple_repeat Simple_repeat 2 52 0 1303 191 112 101 chr3 51981273 51981708 -175542870 - L1MC4 LINE L1 -127 7915 7471 264 226 0 0 chr3 51982110 51982172 -175542406 + (TA)n Simple_repeat Simple_repeat 1 62 0 3594 35 5 2 chr3 51982173 51982601 -175541977 - L1PA6 LINE L1 -16 6138 5710 731 261 22 40 chr3 51983422 51983644 -175540934 - L2 LINE L2 -1 3312 3095 193 283 166 35 chr3 51987175 51987320 -175537258 - MIR SINE MIR -78 184 21 258 105 0 0 chr3 51987385 51987423 -175537155 + (A)n Simple_repeat Simple_repeat 1 38 0 223 303 45 0 chr3 51988036 51988102 -175536476 + MIR SINE MIR 117 185 -77 268 263 0 13 chr3 51988695 51988771 -175535807 + MERVL LTR ERVL 873 947 -4538 336 315 56 85 chr3 51988775 51989257 -175535321 + MERVL LTR ERVL 1122 1589 -4175 189 83 0 0 chr3 51989703 51989727 -175534851 - MIR SINE MIR -118 144 121 204 174 22 22 chr3 51990029 51990075 -175534503 + MIR SINE MIR 104 149 -113 194 315 90 22 chr3 51991020 51991109 -175533469 - MIR SINE MIR -108 154 60 974 112 108 39 chr3 51992155 51992360 -175532218 - MSTA LTR MaLR 0 428 180 364 297 72 41 chr3 51994540 51994664 -175529914 + MIR SINE MIR 59 193 -69 2392 74 0 0 chr3 51994664 51994963 -175529615 + AluY SINE Alu 3 301 -10 364 297 72 41 chr3 51994963 51995033 -175529545 + MIR SINE MIR 193 259 -3 509 333 65 13 chr3 51995600 51995831 -175528747 - MIR SINE MIR -1 261 19 927 242 20 36 chr3 51996067 51996315 -175528263 - MIR SINE MIR 0 262 19 648 221 62 0 chr3 51997738 51997883 -175526695 - LTR16C LTR ERVL -189 302 149 199 294 176 0 chr3 51998699 51998767 -175525811 - L2 LINE L2 0 3272 3193 293 289 59 32 chr3 51998873 51999060 -175525518 - L2 LINE L2 -237 3035 2844 227 287 149 0 chr3 52002402 52002496 -175522082 + MER5A DNA MER1_type 9 116 -73 898 204 9 42 chr3 52002496 52002712 -175521866 + AluJo SINE Alu 85 293 -19 477 279 121 46 chr3 52002969 52003384 -175521194 + L2 LINE L2 2868 3313 0 254 347 0 0 chr3 52003633 52003708 -175520870 - MIR SINE MIR -175 87 13 560 169 16 24 chr3 52004639 52004763 -175519815 + MER5A DNA MER1_type 1 123 -66 500 250 103 6 chr3 52006570 52006726 -175517852 - MIR SINE MIR -22 240 70 268 207 122 0 chr3 52007524 52007606 -175516972 + L2 LINE L2 2863 2954 -359 318 299 45 25 chr3 52007998 52008155 -175516423 + L2 LINE L2 3120 3279 -34 479 250 94 91 chr3 52008462 52008782 -175515796 - MLT1J LTR MaLR -79 432 112 287 303 129 31 chr3 52009097 52009453 -175515125 - L1ME4a LINE L1 -239 5882 5492 188 233 267 0 chr3 52009483 52009573 -175515005 - MIR3 SINE MIR -48 160 47 1665 191 56 21 chr3 52009836 52010213 -175514365 + MLT1B LTR MaLR 1 390 0 505 248 95 67 chr3 52010547 52010757 -175513821 + LTR16C LTR ERVL 276 491 0 2002 165 27 8 chr3 52010785 52011138 -175513440 - L1MC3 LINE L1 -15 7770 5959 1773 154 27 0 chr3 52011133 52011426 -175513152 - L1MC1 LINE L1 -209 6124 5824 * 272 312 0 0 chr3 52011430 52011507 -175513071 + L1ME3A LINE L1 5067 5143 -1003 442 115 0 0 chr3 52011507 52011568 -175513010 + AluS SINE Alu 2 62 -256 307 90 30 0 chr3 52061669 52061734 -175462844 + L1MA4A LINE L1 6219 6291 -12 5863 111 15 2 chr3 52061748 52062683 -175461895 - L1MA4A LINE L1 -83 6220 5274 1138 128 6 0 chr3 52062783 52062963 -175461615 + HERVH LTR ERV1 3509 3689 -4024 * 4497 102 15 1 chr3 52062951 52063625 -175460953 + HERVH LTR ERV1 4466 5148 -2565 1321 167 12 0 chr3 52063627 52063873 -175460705 + HERVH LTR ERV1 5600 5848 -1865 1200 88 53 0 chr3 52063973 52064144 -175460434 + AluSp SINE Alu 119 298 -15 285 228 0 0 chr3 52064176 52064233 -175460345 + MIR SINE MIR 206 262 0 1804 135 33 0 chr3 52064270 52064578 -175460000 - AluSx SINE Alu 0 317 1 897 94 0 0 chr3 52064591 52064708 -175459870 - AluSq/x SINE Alu -195 117 1 330 200 35 35 chr3 52064732 52064817 -175459761 + MIR SINE MIR 178 262 0 584 262 37 33 chr3 52065445 52065716 -175458862 - MER93b LTR ERV1 0 373 102 5232 137 30 34 chr3 52065716 52065847 -175458731 + L1MA7 LINE L1 5202 5332 -959 2025 122 3 3 chr3 52065847 52066134 -175458444 + AluSc SINE Alu 1 287 -22 5232 137 30 34 chr3 52066134 52067093 -175457485 + L1MA7 LINE L1 5332 6291 0 1222 229 96 6 chr3 52067185 52067625 -175456953 + L1ME3A LINE L1 5254 5732 -438 413 150 50 20 chr3 52067904 52068004 -175456574 + L1ME3A LINE L1 5868 5970 -200 26 82 0 0 chr3 52068331 52068392 -175456186 + AT_rich Low_complexity Low_complexity 1 61 0 355 182 102 0 chr3 52068476 52068564 -175456014 - L1MC1 LINE L1 0 6333 6237 2074 82 20 41 chr3 52068968 52069262 -175455316 + AluSg SINE Alu 1 288 -22 466 154 0 13 chr3 52069327 52069405 -175455173 + AluS SINE Alu 220 296 -14 416 218 0 0 chr3 52069601 52069679 -175454899 - MER2 DNA MER2_type 0 345 268 819 191 29 0 chr3 52069716 52069889 -175454689 - MER2 DNA MER2_type -167 178 1 373 179 26 26 chr3 52070431 52070509 -175454069 - MER45A DNA AcHobo -2 176 99 334 191 0 28 chr3 52070492 52070579 -175453999 + MER39 LTR ERV1 485 594 -84 * 917 123 0 0 chr3 52070581 52070711 -175453867 + FLAM_C SINE Alu 2 131 -2 296 170 0 19 chr3 52070711 52070764 -175453814 - MER45A DNA AcHobo -69 109 58 358 271 127 44 chr3 52070915 52071287 -175453291 + LTR33A LTR ERVL 2 433 -90 1315 209 98 51 chr3 52071322 52071800 -175452778 + MER39 LTR ERV1 1 682 -25 263 153 85 0 chr3 52071860 52071919 -175452659 - LTR48 LTR ERV1 -35 752 689 1099 126 6 6 chr3 52072641 52072823 -175451755 - MER84 LTR ERVI -321 186 5 22 35 0 0 chr3 52075628 52075657 -175448921 + AT_rich Low_complexity Low_complexity 1 29 0 623 222 132 6 chr3 52075718 52075885 -175448693 - MER5A DNA MER1_type 0 189 2 21 0 0 0 chr3 52076041 52076062 -175448516 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr3 52077835 52077877 -175446701 + AT_rich Low_complexity Low_complexity 1 42 0 21 57 0 0 chr3 52078097 52078132 -175446446 + AT_rich Low_complexity Low_complexity 1 35 0 2021 122 28 11 chr3 52078947 52079233 -175445345 + AluSg SINE Alu 2 292 -18 687 97 70 35 chr3 52081930 52082066 -175442512 + AluSg/x SINE Alu 178 312 0 417 103 340 10 chr3 52082327 52082424 -175442154 - MER119 DNA MER1_type 0 583 455 1228 145 18 13 chr3 52083086 52083314 -175441264 - L1MA4 LINE L1 -4 6296 6068 4321 127 248 22 chr3 52083417 52084393 -175440185 + Tigger3b DNA MER2_type 1 1210 -1819 2100 140 3 0 chr3 52084393 52084685 -175439893 + AluSx SINE Alu 1 293 -19 4321 127 248 22 chr3 52084685 52084715 -175439863 + Tigger3b DNA MER2_type 1210 1232 0 1439 167 4 41 chr3 52084934 52085204 -175439374 - AluJb SINE Alu -17 295 36 429 118 67 44 chr3 52085489 52085624 -175438954 - L1MDa LINE L1 -4059 2481 2344 935 200 75 16 chr3 52085624 52085879 -175438699 + L1MC4a LINE L1 5602 5871 -1937 3813 247 76 28 chr3 52085881 52087346 -175437232 + L1M4 LINE L1 2151 3699 -2447 2258 120 10 0 chr3 52087346 52087654 -175436924 + AluSx SINE Alu 1 311 -1 3813 247 76 28 chr3 52087654 52087772 -175436806 + L1M4 LINE L1 3699 3810 -2336 976 249 79 3 chr3 52088166 52088450 -175436128 + L2 LINE L2 2710 3008 -305 182 183 150 17 chr3 52088636 52088696 -175435882 + L2 LINE L2 3205 3272 0 256 248 46 28 chr3 52088906 52089015 -175435563 + L1ME4a LINE L1 5805 5915 -206 2389 90 0 0 chr3 52089080 52089379 -175435199 - AluY SINE Alu -12 299 1 233 255 122 31 chr3 52090051 52090247 -175434331 - MLT1L LTR MaLR -363 252 39 435 269 82 0 chr3 52090717 52090851 -175433727 + MIR SINE MIR 47 191 -71 2358 75 7 13 chr3 52091238 52091545 -175433033 + AluY SINE Alu 1 305 -6 229 340 101 21 chr3 52092820 52092991 -175431587 - MIR SINE MIR 0 262 73 2468 67 0 6 chr3 52092991 52093304 -175431274 + AluY SINE Alu 1 311 0 229 340 101 21 chr3 52093304 52093320 -175431258 - MIR SINE MIR -189 73 60 556 262 7 7 chr3 52093447 52093588 -175430990 + LTR16C LTR ERVL 59 199 -292 1080 170 46 5 chr3 52093590 52093808 -175430770 - MLT2D LTR ERVL -170 244 18 794 229 9 18 chr3 52093811 52094029 -175430549 + LTR16C LTR ERVL 276 491 0 220 344 50 100 chr3 52094104 52094345 -175430233 - L2 LINE L2 -138 3134 2906 254 289 111 22 chr3 52094985 52095120 -175429458 + L2 LINE L2 3167 3313 0 225 284 147 11 chr3 52097419 52097514 -175427064 + L2 LINE L2 3161 3268 -4 2001 158 38 28 chr3 52097643 52098067 -175426511 - L1MB8 LINE L1 -153 6025 5598 374 294 84 50 chr3 52098620 52099035 -175425543 + L2 LINE L2 2721 3156 -157 623 251 146 72 chr3 52099048 52099522 -175425056 + LTR33A LTR ERVL 7 515 -8 862 72 0 0 chr3 52099527 52099653 -175424925 - LTR12 LTR ERV1 -21 693 270 3847 151 136 3 chr3 52099653 52100382 -175424196 - LTR12 LTR ERV1 0 826 1 473 227 16 22 chr3 52100563 52100748 -175423830 - pTR5 LTR ERV1 -1483 955 772 650 255 16 21 chr3 52100748 52100936 -175423642 + L2 LINE L2 3127 3313 0 998 243 81 14 chr3 52100952 52101328 -175423250 + LTR16A LTR ERVL 14 450 0 478 279 128 19 chr3 52101850 52102115 -175422463 + MLT1L LTR MaLR 312 605 -10 301 196 11 11 chr3 52102212 52102304 -175422274 + (TA)n Simple_repeat Simple_repeat 1 92 0 12793 189 55 20 chr3 52102559 52103297 -175421281 - L1 LINE L1 -840 6008 5298 2219 105 0 7 chr3 52103297 52103601 -175420977 - AluSc SINE Alu -7 302 1 12793 189 55 20 chr3 52103601 52104114 -175420464 - L1 LINE L1 -1550 5298 4805 2458 147 43 19 chr3 52104114 52104530 -175420048 + MSTA LTR MaLR 1 426 -2 12793 189 55 20 chr3 52104530 52106769 -175417809 - L1 LINE L1 -2043 4805 2449 1716 171 29 0 chr3 52106871 52107152 -175417426 - AluJb SINE Alu -23 289 1 1765 192 84 67 chr3 52107179 52107654 -175416924 - L1 LINE L1 -6165 684 202 931 275 70 8 chr3 52107866 52108266 -175416312 - L1M4 LINE L1 -945 5201 4777 195 347 22 82 chr3 52108849 52109117 -175415461 + L2 LINE L2 2813 3064 -208 303 269 88 47 chr3 52109732 52109903 -175414675 + L1MC4a LINE L1 4755 4932 -1214 26 50 0 0 chr3 52110105 52110145 -175414433 + AT_rich Low_complexity Low_complexity 1 40 0 1085 233 25 22 chr3 52110279 52110601 -175413977 - L1MC4 LINE L1 -135 7907 7585 2916 153 25 8 chr3 52110621 52111151 -175413427 - L1MB4 LINE L1 -8 6172 5634 358 197 26 0 chr3 52111556 52111632 -175412946 - AluJb SINE Alu -183 119 42 2303 97 3 0 chr3 52112471 52112770 -175411808 + AluSx SINE Alu 1 300 -12 693 303 32 0 chr3 52112777 52112998 -175411580 - MIR SINE MIR -25 237 10 406 262 52 42 chr3 52113987 52114178 -175410400 + L1MC4a LINE L1 5335 5527 -2281 295 286 109 71 chr3 52114249 52114543 -175410035 + L1MC4a LINE L1 5625 5929 -1879 330 219 49 0 chr3 52115448 52115530 -175409048 - L1MB4 LINE L1 -462 5659 5574 2405 66 0 23 chr3 52115583 52115888 -175408690 + AluY SINE Alu 1 298 -13 305 292 71 32 chr3 52116139 52116293 -175408285 - L1MB4 LINE L1 -550 5571 5412 239 86 0 0 chr3 52116299 52116334 -175408244 - Alu SINE Alu -8 294 260 1215 75 0 0 chr3 52116334 52116480 -175408098 - AluY SINE Alu -165 146 1 697 262 145 9 chr3 52116610 52116824 -175407754 - MIR SINE MIR -19 243 1 969 196 27 0 chr3 52116968 52117152 -175407426 - MER5A DNA MER1_type 0 189 1 209 278 0 83 chr3 52117282 52117354 -175407224 + MIR SINE MIR 191 256 -6 306 0 0 0 chr3 52117358 52117392 -175407186 + (TGGA)n Simple_repeat Simple_repeat 1 34 0 252 0 0 0 chr3 52117453 52117481 -175407097 + (TG)n Simple_repeat Simple_repeat 2 29 0 2113 120 3 19 chr3 52117614 52117923 -175406655 - AluSx SINE Alu -7 305 2 374 229 23 0 chr3 52118063 52118194 -175406384 + HAL1b LINE L1 1213 1346 -2 1943 139 0 36 chr3 52118205 52118514 -175406064 + AluJb SINE Alu 1 298 -14 26 30 0 0 chr3 52118607 52118640 -175405938 + AT_rich Low_complexity Low_complexity 1 33 0 242 209 30 60 chr3 52118643 52118710 -175405868 + MER113 DNA MER1_type? 457 521 0 23 0 0 0 chr3 52118891 52118914 -175405664 + AT_rich Low_complexity Low_complexity 1 23 0 2118 129 0 0 chr3 52119391 52119694 -175404884 + AluSx SINE Alu 1 303 -9 2207 102 0 13 chr3 52120418 52120721 -175403857 + AluSx SINE Alu 1 299 -13 258 143 57 0 chr3 52121020 52121125 -175403453 + (TA)n Simple_repeat Simple_repeat 2 112 0 1564 233 66 25 chr3 52121371 52121631 -175402947 + L1MD2 LINE L1 4433 4681 -1465 1808 140 38 17 chr3 52121631 52121924 -175402654 + AluJb SINE Alu 1 299 -13 1564 233 66 25 chr3 52121924 52122269 -175402309 + L1MD2 LINE L1 4681 5063 -1083 394 71 60 0 chr3 52122276 52122360 -175402218 + (TA)n Simple_repeat Simple_repeat 1 89 0 2411 107 0 0 chr3 52122360 52122670 -175401908 - AluSg SINE Alu 0 310 1 7126 37 0 1 chr3 52122705 52123595 -175400983 + L1PA3 LINE L1 5296 6155 0 2038 114 40 17 chr3 52123600 52123898 -175400680 + AluSx SINE Alu 1 305 -7 2968 175 48 43 chr3 52123898 52124642 -175399936 + L1MD2 LINE L1 5323 6070 -289 468 189 190 49 chr3 52124647 52124834 -175399744 + L1MD2 LINE L1 6136 7985 -10 1067 252 57 68 chr3 52124864 52125579 -175398999 - L1MC/D LINE L1 -748 5398 4923 2344 77 0 0 chr3 52125579 52125866 -175398712 + AluY SINE Alu 1 287 -24 1067 252 57 68 chr3 52125866 52126055 -175398523 - L1MC/D LINE L1 -1223 4923 4733 1524 186 38 0 chr3 52126309 52126573 -175398005 - AluJb SINE Alu -28 284 11 198 0 0 0 chr3 52126928 52126950 -175397628 + (T)n Simple_repeat Simple_repeat 1 22 0 1910 171 7 0 chr3 52128817 52129116 -175395462 - AluJo SINE Alu -11 301 1 668 229 96 13 chr3 52129500 52129657 -175394921 - MER58C DNA MER1_type 0 215 46 429 208 271 10 chr3 52130065 52130161 -175394417 + FLAM_A SINE Alu 2 122 -11 28 0 0 0 chr3 52130161 52130189 -175394389 + AT_rich Low_complexity Low_complexity 1 28 0 911 86 86 0 chr3 52130210 52130338 -175394240 + MER85 DNA T2_type 1 139 0 2277 112 3 0 chr3 52130467 52130770 -175393808 - AluSp SINE Alu -9 304 1 1917 94 64 4 chr3 52131440 52131706 -175392872 + AluSx SINE Alu 1 282 -30 2943 56 0 3 chr3 52131707 52132065 -175392513 - L1PA5 LINE L1 -131 6023 5667 26 74 0 0 chr3 52132165 52132219 -175392359 + AT_rich Low_complexity Low_complexity 1 54 0 879 222 53 14 chr3 52132386 52132593 -175391985 + MER58C DNA MER1_type 1 215 0 253 160 20 0 chr3 52133635 52133685 -175390893 + MIR SINE MIR 185 235 -27 2043 94 3 28 chr3 52134271 52134580 -175389998 + AluSc SINE Alu 1 302 0 24 32 0 0 chr3 52134691 52134722 -175389856 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 52134749 52134771 -175389807 + AT_rich Low_complexity Low_complexity 1 22 0 300 347 53 21 chr3 52135887 52136077 -175388501 - L2 LINE L2 -459 2855 2660 645 122 0 41 chr3 52136537 52136635 -175387943 + AluJ/FLAM SINE Alu 2 95 -217 1474 154 21 4 chr3 52136660 52136900 -175387678 + AluJb SINE Alu 66 309 -3 25 51 0 0 chr3 52137004 52137043 -175387535 + AT_rich Low_complexity Low_complexity 1 39 0 194 175 75 0 chr3 52137928 52137968 -175386610 - L2 LINE L2 -2 3311 3269 573 236 38 25 chr3 52138074 52138231 -175386347 - MER112 DNA MER1_type -96 164 6 23 78 0 0 chr3 52138513 52138564 -175386014 + AT_rich Low_complexity Low_complexity 1 51 0 1055 180 5 15 chr3 52138594 52138794 -175385784 - L1MB8 LINE L1 -1 6177 5980 3858 183 56 47 chr3 52139291 52139599 -175384979 - L1MB8 LINE L1 -2 6176 5872 2225 117 3 0 chr3 52139599 52139898 -175384680 - AluSx SINE Alu -12 300 1 3858 183 56 47 chr3 52139898 52140596 -175383982 - L1MB8 LINE L1 -306 5872 5183 256 225 58 75 chr3 52141069 52141189 -175383389 + MIR SINE MIR 127 244 -18 22 0 0 0 chr3 52141292 52141314 -175383264 + AT_rich Low_complexity Low_complexity 1 22 0 201 286 36 0 chr3 52141489 52141545 -175383033 + L2 LINE L2 3199 3256 -16 2202 119 3 0 chr3 52141696 52141999 -175382579 - AluSx SINE Alu -8 304 1 210 150 0 0 chr3 52142475 52142515 -175382063 + (TA)n Simple_repeat Simple_repeat 1 40 0 1695 204 92 82 chr3 52143089 52143492 -175381086 - MLT1F1 LTR MaLR -3 564 154 2429 206 65 10 chr3 52143492 52143981 -175380597 - LTR40a LTR ERVL -3 516 1 1695 204 92 82 chr3 52143981 52144076 -175380502 - MLT1F1 LTR MaLR -413 154 61 660 175 217 42 chr3 52145120 52145286 -175379292 - MER112 DNA MER1_type 0 256 42 1645 166 35 7 chr3 52145286 52145570 -175379008 - AluJo SINE Alu -20 292 1 660 175 217 42 chr3 52145570 52145620 -175378958 - MER112 DNA MER1_type -214 42 2 21 36 0 0 chr3 52146677 52146705 -175377873 + AT_rich Low_complexity Low_complexity 1 28 0 1753 145 3 77 chr3 52146750 52147075 -175377503 - AluJb SINE Alu -11 301 1 3623 118 12 0 chr3 52147683 52148184 -175376394 - MER84 LTR ERV1 0 507 1 11615 107 25 11 chr3 52148184 52149295 -175375283 - MER84-int LTR ERV1 0 4954 3810 2124 137 0 0 chr3 52149295 52149588 -175374990 + AluSg SINE Alu 1 293 -17 11615 107 25 11 chr3 52149588 52150136 -175374442 - MER84-int LTR ERV1 -1144 3810 3271 3921 99 77 41 chr3 52150128 52150763 -175373815 - MER84-int LTR ERV1 -2250 2704 2047 * 4098 72 58 9 chr3 52150760 52151327 -175373251 - MER84-int LTR ERV1 -3089 1865 1271 227 176 59 44 chr3 52151443 52151511 -175373067 - L1MB8 LINE L1 -2481 5327 5259 2510 209 38 25 chr3 52151647 52152198 -175372380 + MLT1F1 LTR MaLR 2 559 -8 347 284 110 24 chr3 52152568 52152695 -175371883 - LTR33A LTR ERVL -277 246 109 678 298 83 23 chr3 52152706 52152825 -175371753 - LTR16B LTR ERVL -159 305 195 1795 108 30 19 chr3 52152825 52153094 -175371484 + AluSg SINE Alu 39 310 0 678 298 83 23 chr3 52153094 52153239 -175371339 - LTR16B LTR ERVL -269 195 25 403 279 14 36 chr3 52153479 52153619 -175370959 - L2 LINE L2 -14 3299 3163 2482 225 98 46 chr3 52153924 52154680 -175369898 - MER21B LTR ERV1 -52 811 17 1481 70 35 5 chr3 52154683 52154882 -175369696 - L1PA13 LINE L1 -2 6161 5957 824 164 16 0 chr3 52157031 52157153 -175367425 + FRAM SINE Alu 21 144 -32 2077 112 26 26 chr3 52157304 52157608 -175366970 - AluSx SINE Alu -8 304 1 808 166 121 0 chr3 52158683 52158840 -175365738 - LTR40a LTR ERVL 0 519 344 653 357 84 23 chr3 52158857 52159344 -175365234 - L2 LINE L2 -364 2950 2434 213 306 35 0 chr3 52159439 52159524 -175365054 - L2 LINE L2 -1072 2242 2155 262 188 94 0 chr3 52159844 52159908 -175364670 + L1ME4a LINE L1 6050 6119 -2 609 265 66 12 chr3 52160055 52160221 -175364357 - MER5B DNA MER1_type -2 176 2 225 240 365 0 chr3 52161553 52161657 -175362921 + L2 LINE L2 2814 2955 -359 781 279 62 39 chr3 52161901 52162209 -175362369 - MER102b DNA MER1_type -26 315 1 1574 233 57 64 chr3 52163176 52163722 -175360856 + MLT1F LTR MaLR 1 542 0 2211 119 0 0 chr3 52164785 52165088 -175359490 - AluSc SINE Alu -6 303 1 1707 177 27 0 chr3 52167349 52167643 -175356935 + AluJb SINE Alu 1 302 -10 378 0 0 0 chr3 52168329 52168371 -175356207 + (TA)n Simple_repeat Simple_repeat 2 43 0 2123 242 90 24 chr3 52168508 52169333 -175355245 + L1MEc LINE L1 1204 2082 -4314 1107 78 0 0 chr3 52169365 52169507 -175355071 - AluSg/x SINE Alu -2 308 167 459 0 0 0 chr3 52169517 52169568 -175355010 + (TG)n Simple_repeat Simple_repeat 2 52 0 1779 122 0 4 chr3 52169574 52169812 -175354766 - AluSq SINE Alu -76 237 1 4535 251 120 13 chr3 52169812 52171839 -175352739 + L1MEc LINE L1 2119 4398 -1817 2350 61 41 0 chr3 52171839 52172133 -175352445 + AluY SINE Alu 1 306 -5 410 229 76 25 chr3 52172219 52172337 -175352241 + MLT1J2 LTR MaLR 73 196 -254 2186 116 6 0 chr3 52172466 52172777 -175351801 + AluSp SINE Alu 1 313 0 1613 173 22 11 chr3 52172777 52173054 -175351524 - AluJb SINE Alu -31 281 1 271 268 80 9 chr3 52175127 52175239 -175349339 + MIR SINE MIR 124 243 -19 1728 142 47 7 chr3 52175581 52175855 -175348723 + AluJb SINE Alu 1 285 -27 209 272 19 29 chr3 52176232 52176335 -175348243 + C-rich Low_complexity Low_complexity 1 102 0 23 0 0 0 chr3 52177148 52177171 -175347407 + AT_rich Low_complexity Low_complexity 1 23 0 2342 93 10 0 chr3 52178707 52179008 -175345570 - AluSq SINE Alu -9 304 1 2972 137 26 94 chr3 52182952 52183611 -175340967 - LTR18B LTR ERVL 0 614 1 347 309 138 0 chr3 52183624 52183776 -175340802 - MER5A DNA MER1_type -2 187 15 232 389 107 0 chr3 52184110 52184241 -175340337 + L2 LINE L2 3119 3263 -9 4332 172 39 13 chr3 52184449 52185590 -175338988 + L1MB8 LINE L1 4999 6173 -5 1675 205 40 51 chr3 52186432 52186880 -175337698 - LTR47B LTR ERVL 0 443 1 625 263 39 11 chr3 52186921 52187100 -175337478 + MIR SINE MIR 79 262 0 798 253 144 0 chr3 52187246 52187475 -175337103 + MIR SINE MIR 1 262 0 452 304 116 6 chr3 52188663 52189002 -175335576 + L1MC/D LINE L1 5122 5494 -743 244 287 11 35 chr3 52189074 52189161 -175335417 - L2 LINE L2 0 3313 3229 2846 133 62 42 chr3 52189441 52189712 -175334866 + L1MA6 LINE L1 5019 5283 -1017 336 48 0 0 chr3 52189712 52189754 -175334824 + (TAA)n Simple_repeat Simple_repeat 2 43 0 2846 133 62 42 chr3 52189754 52190118 -175334460 + L1MA6 LINE L1 5283 5638 -662 1542 191 56 0 chr3 52190118 52190385 -175334193 + AluJo SINE Alu 1 282 -30 2846 133 62 42 chr3 52190385 52190506 -175334072 + L1MA6 LINE L1 5638 5780 -520 1678 186 21 0 chr3 52190506 52190627 -175333951 + AluJo SINE Alu 1 118 -194 219 69 0 0 chr3 52190627 52190656 -175333922 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1678 186 21 0 chr3 52190656 52190825 -175333753 + AluJo SINE Alu 118 297 -15 2846 133 62 42 chr3 52190825 52190879 -175333699 + L1MA6 LINE L1 5780 5831 -469 381 222 18 90 chr3 52191031 52191198 -175333380 + L1ME3A LINE L1 3416 3570 -2576 * 5794 141 20 25 chr3 52191197 52193274 -175331304 + L1MA3 LINE L1 4235 6297 -8 667 267 23 23 chr3 52193350 52193405 -175331173 + L1ME3A LINE L1 3626 3680 -2466 2520 56 0 3 chr3 52193405 52193710 -175330868 + AluY SINE Alu 1 304 -7 667 267 23 23 chr3 52193710 52193971 -175330607 + L1ME3A LINE L1 3680 3930 -2216 508 271 140 20 chr3 52194044 52194495 -175330083 + L1ME3A LINE L1 4711 5215 -931 1020 226 42 109 chr3 52194534 52195082 -175329496 + L1ME3A LINE L1 5318 5828 -342 5936 109 25 0 chr3 52195154 52196141 -175328437 - L1PA13 LINE L1 -4 6159 5160 1851 171 3 3 chr3 52196436 52196728 -175327850 - AluSx SINE Alu -20 292 1 2406 47 3 10 chr3 52197849 52198150 -175326428 - AluY SINE Alu -12 299 1 794 210 32 0 chr3 52199639 52199796 -175324782 - MER5A DNA MER1_type -5 184 23 991 235 50 22 chr3 52201372 52201778 -175322800 + L1MC5 LINE L1 6476 6842 -966 749 218 122 41 chr3 52201911 52202273 -175322305 + L1MC5 LINE L1 7136 7526 -435 760 191 191 7 chr3 52202621 52202899 -175321679 + L1ME3A LINE L1 5272 5600 -562 1998 188 41 5 chr3 52202912 52203328 -175321250 + MER63B DNA MER1_type 1 431 -5 438 288 82 21 chr3 52203428 52203661 -175320917 + L1ME3A LINE L1 5724 5970 -200 2149 123 0 0 chr3 52205487 52205788 -175318790 + AluSx SINE Alu 1 301 -11 318 243 77 41 chr3 52205827 52205975 -175318603 - MIR SINE MIR -64 144 1 925 167 160 49 chr3 52206000 52206288 -175318290 - MER33 DNA MER1_type 0 324 5 1724 150 92 0 chr3 52206656 52206929 -175317649 - AluSg SINE Alu -12 298 1 588 223 34 2 chr3 52207026 52207179 -175317399 - MLT1A1 LTR MaLR 0 365 233 1082 116 62 4 chr3 52207289 52207514 -175317064 - LTR7 LTR ERV1 0 450 213 1925 128 17 10 chr3 52207641 52207937 -175316641 - AluJb SINE Alu -14 298 1 596 152 16 8 chr3 52207937 52208062 -175316516 + MER53 DNA DNA 61 186 -3 1674 191 0 17 chr3 52208666 52208959 -175315619 + AluJo SINE Alu 1 288 -24 195 129 0 0 chr3 52209020 52209051 -175315527 + (TG)n Simple_repeat Simple_repeat 1 31 0 24 0 0 0 chr3 52209232 52209256 -175315322 + AT_rich Low_complexity Low_complexity 1 24 0 1055 232 131 82 chr3 52209308 52210132 -175314446 + L1MEc LINE L1 1343 2125 -4090 2262 119 0 0 chr3 52210132 52210434 -175314144 + AluSx SINE Alu 1 302 -10 1055 232 131 82 chr3 52210434 52210636 -175313942 + L1MEc LINE L1 2125 2316 -3899 2287 93 0 3 chr3 52210636 52210925 -175313653 + AluSg SINE Alu 11 298 -12 1055 232 131 82 chr3 52210925 52211025 -175313553 + L1MEc LINE L1 2316 2516 -3699 722 257 134 6 chr3 52212235 52212463 -175312115 - MIR SINE MIR -6 256 2 1734 127 99 30 chr3 52212937 52213299 -175311279 + L1MA7 LINE L1 5895 6281 -10 318 290 152 7 chr3 52213564 52213702 -175310876 - L2 LINE L2 -11 3302 3145 1756 153 124 52 chr3 52213760 52214203 -175310375 + MER92B LTR ERV1 4 478 -158 2433 89 0 0 chr3 52214253 52214555 -175310023 - AluSx SINE Alu -10 302 1 978 154 0 0 chr3 52214555 52214691 -175309887 - AluSq/x SINE Alu -177 136 1 230 291 105 0 chr3 52214935 52215021 -175309557 + MIR3 SINE MIR 98 192 -16 1634 186 11 0 chr3 52215614 52215894 -175308684 + AluJo SINE Alu 1 283 -29 396 0 0 0 chr3 52215904 52215948 -175308630 + (TG)n Simple_repeat Simple_repeat 2 45 0 443 279 78 0 chr3 52215967 52216096 -175308482 - MIR SINE MIR -13 249 111 221 333 77 36 chr3 52216529 52216697 -175307881 - L2 LINE L2 -223 3049 2875 229 182 136 0 chr3 52216717 52216783 -175307795 - LTR37A LTR ERV1 0 426 352 404 339 123 42 chr3 52216925 52217423 -175307155 - L2 LINE L2 -493 2821 2284 2523 58 7 10 chr3 52221372 52221680 -175302898 - AluY SINE Alu -4 307 1 363 292 146 11 chr3 52222351 52222536 -175302042 - MIR SINE MIR -21 241 32 350 268 222 20 chr3 52222548 52222701 -175301877 + MIR SINE MIR 31 214 -48 1250 262 131 32 chr3 52222950 52223494 -175301084 - HAL1b LINE L1 -81 1267 620 2127 104 10 10 chr3 52223494 52223792 -175300786 - AluSx SINE Alu -14 298 1 1250 262 131 32 chr3 52223792 52224034 -175300544 - HAL1b LINE L1 -728 620 403 24 0 0 0 chr3 52224303 52224327 -175300251 + AT_rich Low_complexity Low_complexity 1 24 0 45 19 0 0 chr3 52226231 52226283 -175298295 + AT_rich Low_complexity Low_complexity 1 52 0 309 202 36 60 chr3 52226392 52226476 -175298102 - MIR SINE MIR -160 102 21 1769 189 0 16 chr3 52226949 52227262 -175297316 - AluJb SINE Alu -4 308 1 355 273 91 20 chr3 52227329 52227527 -175297051 + MER112 DNA MER1_type 9 220 -40 234 314 16 67 chr3 52228675 52228867 -175295711 - L2 LINE L2 -50 3222 2977 400 290 24 0 chr3 52228964 52229088 -175295490 + MER94 DNA DNA 1 127 -7 293 304 302 15 chr3 52229098 52229509 -175295069 - L2 LINE L2 -541 2773 2245 560 214 112 51 chr3 52229893 52230089 -175294489 - MIR SINE MIR -54 208 1 2364 96 3 0 chr3 52230185 52230488 -175294090 + AluSp SINE Alu 1 304 -9 2410 72 0 0 chr3 52231210 52231503 -175293075 + AluY SINE Alu 1 293 -18 459 0 0 0 chr3 52231510 52231561 -175293017 + (CA)n Simple_repeat Simple_repeat 2 52 0 28 91 0 0 chr3 52231661 52231738 -175292840 + AT_rich Low_complexity Low_complexity 1 77 0 188 83 0 56 chr3 52232811 52232847 -175291731 + (TATG)n Simple_repeat Simple_repeat 3 36 0 1677 151 13 34 chr3 52232887 52233185 -175291393 + AluJb SINE Alu 2 293 -19 613 146 19 25 chr3 52233192 52233350 -175291228 + (TG)n Simple_repeat Simple_repeat 1 157 0 747 225 294 7 chr3 52233473 52233749 -175290829 - L1MD2 LINE L1 0 6359 6005 837 233 45 19 chr3 52233799 52234065 -175290513 - L1ME LINE L1 -2904 3176 2904 3227 167 11 40 chr3 52234071 52234716 -175289862 - L1MD1 LINE L1 -22 6220 5595 1210 273 79 33 chr3 52234714 52235205 -175289373 - L1ME LINE L1 -5538 532 19 * 806 246 206 31 chr3 52235315 52235718 -175288860 - L1MD2 LINE L1 -1992 5816 5326 1845 140 52 25 chr3 52235718 52236083 -175288495 + THE1C LTR MaLR 1 375 0 806 246 206 31 chr3 52236083 52236126 -175288452 - L1MD2 LINE L1 -2482 5326 5292 319 315 47 7 chr3 52236229 52236378 -175288200 - L1MD2 LINE L1 -977 5169 5015 21 0 0 0 chr3 52236474 52236495 -175288083 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr3 52236628 52236662 -175287916 + AT_rich Low_complexity Low_complexity 1 34 0 264 223 192 42 chr3 52236672 52236865 -175287713 - L1MD2 LINE L1 -1161 4985 4764 298 207 99 16 chr3 52236971 52237092 -175287486 - L1MD2 LINE L1 -1560 4586 4456 3503 174 9 0 chr3 52237100 52237749 -175286829 - L1P LINE L1 -1093 5053 4399 244 219 29 95 chr3 52238703 52238808 -175285770 - MIR3 SINE MIR -5 203 106 913 179 64 0 chr3 52238838 52239011 -175285567 + MER5A DNA MER1_type 1 184 -5 6396 121 41 13 chr3 52240105 52241116 -175283462 - Tigger1 DNA MER2_type 0 2418 1380 704 194 90 0 chr3 52241248 52241403 -175283175 + FAM SINE Alu 1 169 -6 8074 132 31 16 chr3 52241411 52242726 -175281852 - Tigger1 DNA MER2_type -1029 1389 55 26 0 0 0 chr3 52242726 52242752 -175281826 + AT_rich Low_complexity Low_complexity 1 26 0 2144 115 0 10 chr3 52243127 52243432 -175281146 - AluSg SINE Alu -8 302 1 21 36 0 0 chr3 52243845 52243873 -175280705 + AT_rich Low_complexity Low_complexity 1 28 0 206 61 0 30 chr3 52243873 52243906 -175280672 + (TTTTTA)n Simple_repeat Simple_repeat 1 32 0 1349 203 48 68 chr3 52243974 52244201 -175280377 - MLT1B LTR MaLR 0 390 173 2197 104 3 29 chr3 52244201 52244517 -175280061 - AluSx SINE Alu -2 310 3 1349 203 48 68 chr3 52244517 52244683 -175279895 - MLT1B LTR MaLR -217 173 5 324 250 78 23 chr3 52295534 52295662 -175228916 + L1MCa LINE L1 1930 2064 -4362 1659 161 20 10 chr3 52295695 52296000 -175228578 - AluJb SINE Alu -4 308 1 499 133 0 57 chr3 52296005 52296110 -175228468 - L1MC2 LINE L1 -204 6140 6042 413 111 0 16 chr3 52296117 52296180 -175228398 + FRAM/FAM SINE Alu 6 67 -109 553 275 7 0 chr3 52296180 52296322 -175228256 - L1M4 LINE L1 -1387 4759 4617 * 1145 94 77 0 chr3 52296321 52296491 -175228087 - L1MC1 LINE L1 -273 6060 5878 1418 152 0 21 chr3 52296503 52296740 -175227838 - AluJo SINE Alu 0 312 81 2860 159 26 13 chr3 52296740 52297269 -175227309 - L1MC1 LINE L1 -484 5849 5314 836 117 8 16 chr3 52297269 52297397 -175227181 - AluJb SINE Alu -185 127 1 3927 195 26 147 chr3 52297397 52297765 -175226813 - L1MC1 LINE L1 -817 5329 4918 2304 87 0 0 chr3 52297765 52298064 -175226514 - AluSc SINE Alu -10 299 1 3927 195 26 147 chr3 52298064 52298645 -175225933 - L1MC1 LINE L1 -1228 4918 4418 1295 90 15 35 chr3 52298645 52298846 -175225732 - AluSp SINE Alu -12 301 105 3927 195 26 147 chr3 52298846 52299260 -175225318 - L1MC1 LINE L1 -1728 4418 3955 1951 97 17 30 chr3 52299717 52300017 -175224561 + AluSp SINE Alu 1 296 -17 2189 101 3 0 chr3 52300018 52300316 -175224262 + AluSp SINE Alu 1 299 -14 1668 295 52 79 chr3 52301087 52301421 -175223157 - MER70-int LTR ERVL -1524 3499 3157 2255 96 7 0 chr3 52301421 52301722 -175222856 + AluSx SINE Alu 1 303 -9 1668 295 52 79 chr3 52301722 52302194 -175222384 - MER70-int LTR ERVL -1866 3157 2715 909 272 11 23 chr3 52302563 52302824 -175221754 - MER70-int LTR ERVL -2310 2713 2456 980 208 61 58 chr3 52302832 52303144 -175221434 - MLT1A1 LTR MaLR 0 365 53 833 178 0 0 chr3 52303144 52303273 -175221305 - FLAM_A SINE Alu -13 129 1 312 75 75 38 chr3 52303273 52303326 -175221252 - MSTC LTR MaLR -373 55 1 693 322 60 18 chr3 52303327 52303610 -175220968 - MER70-int LTR ERVL -2576 2447 2153 2115 171 55 2 chr3 52303616 52304014 -175220564 - MER95 LTR ERV -4 427 9 1543 308 53 18 chr3 52304018 52304607 -175219971 - MER70-int LTR ERVL -2081 3404 1545 388 136 76 0 chr3 52304726 52304792 -175219786 + MLT1A2 LTR MaLR 1 71 -303 388 295 38 41 chr3 52304907 52305103 -175219475 + MLT-int LTR MaLR 955 1081 -290 555 149 53 0 chr3 52305105 52305199 -175219379 - AluJo SINE Alu -14 298 200 960 136 0 19 chr3 52305199 52305353 -175219225 - AluJo SINE Alu -161 151 1 1788 133 28 59 chr3 52305356 52305533 -175219045 + MLT1A2-int LTR MaLR 1423 1587 -148 2193 74 7 3 chr3 52305533 52305817 -175218761 - AluSg SINE Alu -25 285 1 1788 133 28 59 chr3 52305817 52305962 -175218616 + MLT1A2-int LTR MaLR 1587 1735 0 1337 210 42 33 chr3 52305980 52306314 -175218264 + MLT1A2 LTR MaLR 38 374 0 323 312 126 43 chr3 52306455 52306686 -175217892 + L1M4 LINE L1 3726 3975 -2171 1600 175 7 16 chr3 52306686 52306994 -175217584 + AluJo SINE Alu 1 305 -7 734 203 198 15 chr3 52307026 52307223 -175217355 - MIR SINE MIR -28 234 2 327 315 174 11 chr3 52307233 52307417 -175217161 + L1M4 LINE L1 3965 4178 -1968 2071 132 0 0 chr3 52308029 52308332 -175216246 - AluSx SINE Alu -7 305 3 489 200 117 42 chr3 52308939 52309059 -175215519 + FLAM_C SINE Alu 5 133 0 1978 217 40 53 chr3 52309339 52309888 -175214690 + MER92B LTR ERV1 1 542 -94 666 137 10 10 chr3 52309888 52309990 -175214588 - MER74C LTR ERVL -358 102 1 2344 72 10 3 chr3 52309995 52310299 -175214279 + AluSp SINE Alu 1 306 -7 2287 82 0 0 chr3 52310306 52310599 -175213979 + AluSc SINE Alu 2 294 -15 512 289 36 8 chr3 52310928 52311172 -175213406 - L1MEd LINE L1 -4862 1257 1063 260 220 0 0 chr3 52311240 52311290 -175213288 - L1MEd LINE L1 -6068 51 2 2584 42 0 0 chr3 52311331 52311637 -175212941 + AluY SINE Alu 1 306 -5 2499 222 62 0 chr3 52311981 52312498 -175212080 - MLT1F1 LTR MaLR -3 564 16 2519 146 4 44 chr3 52312498 52312730 -175211848 - Tigger2a DNA MER2_type -2275 433 193 1605 159 38 14 chr3 52312730 52313020 -175211558 + AluJo SINE Alu 1 297 -15 1514 205 0 0 chr3 52313024 52313302 -175211276 + AluJb SINE Alu 16 293 -19 2519 146 4 44 chr3 52313302 52313515 -175211063 - Tigger2a DNA MER2_type -2518 190 1 1730 144 0 33 chr3 52314704 52315009 -175209569 + AluSx SINE Alu 1 295 -17 2089 92 3 0 chr3 52315011 52315325 -175209253 + AluSx SINE Alu 1 315 0 1784 118 7 21 chr3 52315325 52315635 -175208943 + AluSx SINE Alu 1 306 0 836 172 184 31 chr3 52315635 52315891 -175208687 + LTR54B LTR ERV1 82 376 -122 242 219 27 0 chr3 52316013 52316086 -175208492 + CT-rich Low_complexity Low_complexity 3 77 0 859 146 0 0 chr3 52316086 52316230 -175208348 - AluJb SINE Alu -36 276 133 2001 84 27 10 chr3 52316956 52317253 -175207325 - AluSg SINE Alu -8 302 1 196 0 114 0 chr3 52317452 52317496 -175207082 + (CCCG)n Simple_repeat Simple_repeat 3 51 0 215 266 0 44 chr3 52317659 52317772 -175206806 + G-rich Low_complexity Low_complexity 1 108 0 463 234 186 27 chr3 52318011 52318199 -175206379 + L2 LINE L2 3095 3312 -1 431 348 71 0 chr3 52318774 52319056 -175205522 - L1MC4a LINE L1 -1969 5839 5538 1974 117 10 13 chr3 52319209 52319509 -175205069 - AluSg1 SINE Alu -10 299 1 2184 109 6 0 chr3 52319916 52320227 -175204351 - AluSp SINE Alu 0 313 1 2333 70 0 3 chr3 52320612 52320910 -175203668 + AluY SINE Alu 1 297 -14 1509 146 56 43 chr3 52320996 52321298 -175203280 + AluJb SINE Alu 1 306 -6 254 205 65 34 chr3 52321509 52321598 -175202980 - MIR SINE MIR -36 172 86 20919 58 33 15 chr3 52321949 52322491 -175202087 + HUERS-P1 LTR ERV1 3363 3894 -2369 1953 126 0 3 chr3 52322491 52322813 -175201765 + AluSx SINE Alu 1 321 0 20919 58 33 15 chr3 52322813 52325117 -175199461 + HUERS-P1 LTR ERV1 3894 6262 -1 5222 72 14 31 chr3 52325118 52325821 -175198757 + LTR8 LTR ERV1 1 691 0 321 174 0 0 chr3 52325835 52325881 -175198697 + Alu SINE Alu 1 46 -256 1873 132 3 3 chr3 52326346 52326674 -175197904 + AluSq SINE Alu 1 328 0 1473 180 22 4 chr3 52326815 52327082 -175197496 - AluJo SINE Alu -39 273 2 203 253 13 38 chr3 52327878 52327957 -175196621 + GA-rich Low_complexity Low_complexity 4 80 0 708 174 0 0 chr3 52329262 52329371 -175195207 - FLAM_A SINE Alu -33 109 1 384 285 156 27 chr3 52333671 52333732 -175190846 - MIR SINE MIR -6 256 204 1819 149 13 7 chr3 52333732 52334033 -175190545 - AluJb SINE Alu -9 303 1 384 285 156 27 chr3 52334033 52334157 -175190421 - MIR SINE MIR -58 204 47 186 197 84 28 chr3 52335575 52335646 -175188932 + L3 LINE CR1 1319 1393 -184 1973 114 3 0 chr3 52336811 52337100 -175187478 - AluSc SINE Alu -14 295 6 203 125 0 50 chr3 52337143 52337183 -175187395 + (TATATG)n Simple_repeat Simple_repeat 4 41 0 1875 148 0 10 chr3 52337184 52337489 -175187089 - AluSx SINE Alu -10 302 1 182 267 67 0 chr3 52337666 52337711 -175186867 + L2 LINE L2 3262 3309 -4 1077 130 0 19 chr3 52337925 52338087 -175186491 + AluSx SINE Alu 1 159 -153 225 94 0 0 chr3 52338088 52338120 -175186458 + (A)n Simple_repeat Simple_repeat 1 32 0 1587 175 35 7 chr3 52338335 52338620 -175185958 - AluJb SINE Alu -19 293 1 794 142 7 57 chr3 52338620 52338761 -175185817 - AluJo SINE Alu -176 136 3 1254 230 41 63 chr3 52339765 52340028 -175184550 + L1M4 LINE L1 4428 4678 -1468 1897 141 0 3 chr3 52340028 52340312 -175184266 + AluSx SINE Alu 1 285 -27 207 100 0 0 chr3 52340312 52340342 -175184236 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 1897 141 0 3 chr3 52340342 52340355 -175184223 + AluSx SINE Alu 285 297 -15 1254 230 41 63 chr3 52340355 52340534 -175184044 + L1M4 LINE L1 4678 4860 -1286 21 0 0 0 chr3 52340556 52340577 -175184001 + AT_rich Low_complexity Low_complexity 1 21 0 1531 137 0 34 chr3 52340775 52341037 -175183541 + AluSx SINE Alu 36 288 -24 1455 176 48 14 chr3 52341164 52341453 -175183125 - AluJo SINE Alu -10 302 4 739 236 11 76 chr3 52341458 52341615 -175182963 + L1M4 LINE L1 4849 5015 -1131 2077 112 0 39 chr3 52341615 52341927 -175182651 + AluSg SINE Alu 1 300 -10 739 236 11 76 chr3 52341927 52341985 -175182593 + L1M4 LINE L1 5015 5047 -1099 2111 110 0 0 chr3 52341985 52342275 -175182303 + AluSc SINE Alu 1 290 -19 739 236 11 76 chr3 52342275 52342321 -175182257 + L1M4 LINE L1 5047 5094 -1052 393 147 4 78 chr3 52342332 52342417 -175182161 + MER21A LTR ERV1 1 83 -780 537 106 0 154 chr3 52342508 52342631 -175181947 + MER21A LTR ERV1 70 173 -758 * 1553 217 30 119 chr3 52342625 52343188 -175181390 + MER21A LTR ERV1 111 623 -308 655 278 134 22 chr3 52343206 52343743 -175180835 + L1MC/D LINE L1 4395 4991 -1155 820 172 0 22 chr3 52343817 52343951 -175180627 + FLAM_C SINE Alu 2 132 -1 239 288 99 0 chr3 52343952 52344063 -175180515 + L1MC/D LINE L1 5636 5757 -2051 5136 78 31 1 chr3 52344075 52344746 -175179832 + LTR8 LTR ERV1 1 691 0 22556 96 53 36 chr3 52344746 52346898 -175177680 + HUERS-P1 LTR ERV1 1 2115 -4148 321 26 0 0 chr3 52346908 52346946 -175177632 + (TG)n Simple_repeat Simple_repeat 1 38 0 1941 138 3 0 chr3 52346946 52347226 -175177352 - AluSx SINE Alu -28 284 1 22556 96 53 36 chr3 52347226 52347736 -175176842 + HUERS-P1 LTR ERV1 2115 2615 -3648 1875 156 7 0 chr3 52347736 52348043 -175176535 + AluSx SINE Alu 1 309 -3 22556 96 53 36 chr3 52348043 52348683 -175175895 + HUERS-P1 LTR ERV1 2615 3368 -2895 1831 122 27 3 chr3 52348683 52348977 -175175601 + AluSg SINE Alu 1 301 -9 22556 96 53 36 chr3 52348977 52349150 -175175428 + HUERS-P1 LTR ERV1 3368 3537 -2726 904 246 95 4 chr3 52350683 52351078 -175173500 - LTR33 LTR ERVL -23 498 1 424 221 196 44 chr3 52351592 52351750 -175172828 - MER5A DNA MER1_type -4 185 4 489 207 173 13 chr3 52351769 52351919 -175172659 + MER5B DNA MER1_type 1 174 -4 355 235 17 70 chr3 52352774 52352889 -175171689 + L2 LINE L2 3205 3313 0 1145 146 3 84 chr3 52352931 52353193 -175171385 + LTR54 LTR ERV1 167 462 -48 2059 99 3 3 chr3 52353193 52353506 -175171072 - AluSx SINE Alu 0 313 1 1145 146 3 84 chr3 52353506 52353552 -175171026 + LTR54 LTR ERV1 462 510 0 242 143 20 0 chr3 52353692 52353741 -175170837 + GA-rich Low_complexity Low_complexity 2 51 0 2519 51 0 3 chr3 52353899 52354211 -175170367 + AluY SINE Alu 1 311 0 286 275 25 0 chr3 52354418 52354498 -175170080 - L2 LINE L2 0 3313 3232 25 31 0 0 chr3 52354935 52354967 -175169611 + GC_rich Low_complexity Low_complexity 1 32 0 366 261 16 38 chr3 52355329 52355513 -175169065 + GA-rich Low_complexity Low_complexity 1 180 0 189 147 0 0 chr3 52355608 52355642 -175168936 + (GGA)n Simple_repeat Simple_repeat 1 34 0 310 134 0 0 chr3 52355765 52355826 -175168752 + Alu SINE Alu 250 298 -2 1097 149 0 0 chr3 52356256 52356430 -175168148 + AluSg/x SINE Alu 130 303 -9 311 300 170 22 chr3 52356434 52357211 -175167367 - L1M4 LINE L1 -1300 4846 3955 1862 182 36 102 chr3 52357296 52357554 -175167024 - L1M4 LINE L1 -431 5753 5480 1551 168 0 4 chr3 52357554 52357816 -175166762 - AluJb SINE Alu -12 300 40 1862 182 36 102 chr3 52357816 52357977 -175166601 - L1M4 LINE L1 -704 5480 5310 2114 117 0 3 chr3 52357977 52358277 -175166301 - AluSx SINE Alu -13 299 1 1862 182 36 102 chr3 52358277 52358656 -175165922 - L1M4 LINE L1 -874 5310 5074 2011 118 6 13 chr3 52358656 52358969 -175165609 - AluSq SINE Alu -1 312 2 1862 182 36 102 chr3 52358969 52359455 -175165123 - L1M4 LINE L1 -1110 5074 4558 496 287 0 43 chr3 52359992 52360219 -175164359 + G-rich Low_complexity Low_complexity 1 217 0 423 207 52 0 chr3 52360468 52360584 -175163994 - AluSq/x SINE Alu -177 135 14 2287 84 0 38 chr3 52361027 52361347 -175163231 + AluSp SINE Alu 1 308 -5 216 275 84 53 chr3 52363776 52363907 -175160671 + L3 LINE CR1 1442 1576 -1 331 190 0 0 chr3 52366561 52366619 -175157959 + FLAM_A SINE Alu 43 100 -33 327 212 41 20 chr3 52366635 52366781 -175157797 + CT-rich Low_complexity Low_complexity 4 152 0 1637 161 44 7 chr3 52366784 52367082 -175157496 - AluSq SINE Alu -2 311 3 825 163 56 51 chr3 52367085 52367263 -175157315 + AluJo SINE Alu 104 282 -30 202 27 0 54 chr3 52367269 52367306 -175157272 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 558 225 104 119 chr3 52367867 52368413 -175156165 + L1MD3 LINE L1 6738 7275 -720 1027 210 162 34 chr3 52368455 52368508 -175156070 + L1MD3 LINE L1 7590 7635 -360 2074 89 7 0 chr3 52368508 52368824 -175155754 + AluSp SINE Alu 1 318 0 1027 210 162 34 chr3 52368824 52369121 -175155457 + L1MD3 LINE L1 7635 7986 -9 1535 125 128 29 chr3 52369124 52369405 -175155173 + AluSq SINE Alu 1 309 -4 245 128 21 0 chr3 52369833 52369880 -175154698 + (CA)n Simple_repeat Simple_repeat 1 48 0 2397 84 3 0 chr3 52370534 52370845 -175153733 + AluSx SINE Alu 1 312 0 2048 116 3 16 chr3 52371936 52372247 -175152331 + AluSg SINE Alu 1 307 -3 530 260 148 26 chr3 52373636 52374131 -175150447 + L2 LINE L2 2692 3243 -70 206 263 0 12 chr3 52374470 52374550 -175150028 + (CGCGG)n Simple_repeat Simple_repeat 1 79 0 2157 66 15 0 chr3 52375099 52375373 -175149205 + AluSp SINE Alu 1 278 -35 414 0 0 0 chr3 52375377 52375423 -175149155 + (CA)n Simple_repeat Simple_repeat 1 46 0 607 209 147 94 chr3 52375507 52375847 -175148731 + L1MD3 LINE L1 6738 7095 -900 1156 73 0 0 chr3 52375975 52376125 -175148453 - AluSg/x SINE Alu -38 272 123 240 296 86 0 chr3 52376160 52376241 -175148337 + L2 LINE L2 3179 3266 -6 1806 277 45 19 chr3 52377540 52378133 -175146445 - L1MEc LINE L1 -5753 643 35 322 238 123 33 chr3 52378137 52378259 -175146319 - L1MEd LINE L1 -3197 2932 2800 1029 276 67 20 chr3 52378409 52378815 -175145763 - L1MEd LINE L1 -5673 446 22 2193 100 7 7 chr3 52378816 52379125 -175145453 - AluSx SINE Alu -3 309 1 852 152 0 36 chr3 52379367 52379505 -175145073 + FLAM_C SINE Alu 1 133 0 2174 194 55 64 chr3 52380110 52380655 -175143923 + MLT2B3 LTR ERVL 1 540 -14 857 234 0 0 chr3 52381419 52381594 -175142984 - FRAM SINE Alu -3 173 1 363 351 54 24 chr3 52381638 52381754 -175142824 - L2 LINE L2 -2871 443 332 1525 101 0 5 chr3 52381754 52381998 -175142580 + AluSq SINE Alu 78 320 0 2180 110 0 22 chr3 52381998 52382316 -175142262 + AluSx SINE Alu 2 312 0 363 351 54 24 chr3 52382316 52382402 -175142176 - L2 LINE L2 -2981 333 233 286 289 199 9 chr3 52383249 52383378 -175141200 + MIR SINE MIR 9 162 -46 357 322 55 33 chr3 52383650 52383833 -175140745 + MLT1L LTR MaLR 257 443 -172 713 261 86 20 chr3 52384035 52384283 -175140295 - MIR SINE MIR -1 261 5 245 333 30 15 chr3 52384577 52384709 -175139869 - MIR SINE MIR -121 141 8 716 188 44 12 chr3 52384754 52384914 -175139664 - L1ME4a LINE L1 0 6121 5957 572 244 92 32 chr3 52384966 52385183 -175139395 - L1ME4a LINE L1 -264 5857 5628 2132 76 94 4 chr3 52386733 52387010 -175137568 - AluSq SINE Alu -11 302 1 2548 54 0 0 chr3 52387373 52387670 -175136908 - AluY SINE Alu -14 297 1 1507 140 54 0 chr3 52388138 52388416 -175136162 - L1MA8 LINE L1 0 6291 5999 2196 106 0 10 chr3 52388428 52388729 -175135849 - AluSx SINE Alu -14 298 1 284 293 71 71 chr3 52388799 52389013 -175135565 - L1MC/D LINE L1 -2032 5776 5560 1866 181 0 0 chr3 52389013 52389305 -175135273 + AluJb SINE Alu 1 292 -20 284 293 71 71 chr3 52389305 52389329 -175135249 - L1MC/D LINE L1 -2247 5561 5538 1779 172 34 78 chr3 52389837 52390245 -175134333 + MLT1B LTR MaLR 1 390 0 207 0 0 0 chr3 52390458 52390481 -175134097 + (A)n Simple_repeat Simple_repeat 1 23 0 471 231 29 0 chr3 52390527 52390631 -175133947 + L2 LINE L2 3196 3302 -11 518 275 0 0 chr3 52391040 52391160 -175133418 - MER94 DNA DNA 0 134 15 293 180 0 0 chr3 52391304 52391354 -175133224 + L2 LINE L2 3263 3312 -1 1221 146 190 37 chr3 52391670 52391938 -175132640 + AluJo SINE Alu 1 309 -3 2399 167 36 14 chr3 52391977 52392356 -175132222 + MSTA LTR MaLR 1 392 -36 2332 81 0 3 chr3 52392356 52392669 -175131909 - AluSp SINE Alu 0 312 1 2399 167 36 14 chr3 52392669 52392707 -175131871 + MSTA LTR MaLR 392 428 0 257 313 8 3 chr3 52393877 52394009 -175130569 - MIR3 SINE MIR -3 205 32 328 267 11 33 chr3 52394453 52394543 -175130035 - MIR SINE MIR -112 150 63 366 207 85 0 chr3 52394923 52395005 -175129573 + L2 LINE L2 3184 3272 0 298 224 12 35 chr3 52395012 52395097 -175129481 + MIR3 SINE MIR 83 165 -43 579 248 258 10 chr3 52395906 52396204 -175128374 - L2 LINE L2 -24 3289 2918 362 234 106 11 chr3 52396219 52396313 -175128265 - L2 LINE L2 -503 2811 2709 1648 260 150 4 chr3 52396453 52396973 -175127605 - L2 LINE L2 -598 2716 2121 198 250 111 65 chr3 52397061 52397169 -175127409 - MIR SINE MIR -56 152 40 2173 96 0 4 chr3 52397215 52397496 -175127082 + AluSq SINE Alu 1 280 -33 351 0 0 0 chr3 52397496 52397535 -175127043 + (CA)n Simple_repeat Simple_repeat 1 39 0 277 299 8 8 chr3 52399338 52399472 -175125106 + CT-rich Low_complexity Low_complexity 5 138 0 201 289 0 22 chr3 52399576 52399711 -175124867 + C-rich Low_complexity Low_complexity 1 132 0 29 0 0 0 chr3 52400124 52400153 -175124425 + GC_rich Low_complexity Low_complexity 1 29 0 24 53 0 0 chr3 52400567 52400605 -175123973 + AT_rich Low_complexity Low_complexity 1 38 0 1846 276 44 19 chr3 52400642 52401236 -175123342 + L1MEc LINE L1 246 854 -5753 376 252 53 0 chr3 52401278 52401409 -175123169 + L1MEc LINE L1 1469 1606 -4820 738 180 0 0 chr3 52401409 52401520 -175123058 + FRAM SINE Alu 26 136 -40 679 238 30 0 chr3 52401525 52401689 -175122889 + L1MEc LINE L1 1806 1974 -4633 593 166 234 35 chr3 52401690 52401835 -175122743 - MER20 DNA MER1_type -5 214 41 444 217 104 0 chr3 52401856 52401971 -175122607 + L1MEc LINE L1 2199 2325 -4282 1945 141 3 38 chr3 52401976 52402296 -175122282 + AluJb SINE Alu 1 309 -3 1569 187 14 27 chr3 52402302 52402596 -175121982 + AluJo SINE Alu 1 290 -22 242 239 30 0 chr3 52402596 52402663 -175121915 + L1MEc LINE L1 3248 3316 -3110 315 122 0 0 chr3 52402680 52402729 -175121849 + (CA)n Simple_repeat Simple_repeat 2 50 0 820 172 0 37 chr3 52402737 52402871 -175121707 + FLAM_A SINE Alu 1 129 -4 1221 243 60 24 chr3 52402886 52403338 -175121240 + L1MEc LINE L1 3351 3818 -2608 * 7289 105 16 8 chr3 52403325 52404297 -175120281 + L1MA2 LINE L1 5140 6126 -178 2431 40 24 10 chr3 52404297 52404595 -175119983 - AluY SINE Alu -9 302 1 7289 105 16 8 chr3 52404595 52404776 -175119802 + L1MA2 LINE L1 6126 6304 0 5738 248 47 27 chr3 52404779 52405437 -175119141 + L1MEc LINE L1 3789 4432 -2014 195 42 0 0 chr3 52405437 52405461 -175119117 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 5738 248 47 27 chr3 52405461 52406872 -175117706 + L1MEc LINE L1 4432 5898 -548 4905 155 39 39 chr3 52406845 52406915 -175117663 + L1MB2 LINE L1 5337 5405 -1046 * 2091 136 3 0 chr3 52406915 52407216 -175117362 + AluSx SINE Alu 3 304 -8 4905 155 39 39 chr3 52407216 52407691 -175116887 + L1MB2 LINE L1 5405 5878 -573 1904 163 0 0 chr3 52407691 52407980 -175116598 + AluJb SINE Alu 1 289 -23 198 0 0 0 chr3 52407980 52408002 -175116576 + (TTAA)n Simple_repeat Simple_repeat 1 22 0 4905 155 39 39 chr3 52408002 52408235 -175116343 + L1MB2 LINE L1 5878 6109 -342 2313 84 27 0 chr3 52408235 52408531 -175116047 + AluSc SINE Alu 1 304 -5 4905 155 39 39 chr3 52408531 52408866 -175115712 + L1MB2 LINE L1 6109 6448 -3 1880 201 96 23 chr3 52408882 52409309 -175115269 + L1MEc LINE L1 961 1418 -5441 2516 213 62 0 chr3 52409331 52409828 -175114750 + MER68 LTR ERV1 21 548 -14 10042 161 44 22 chr3 52409833 52410085 -175114493 + L1MA5 LINE L1 3238 3483 -2817 222 37 0 0 chr3 52410085 52410112 -175114466 + (CAA)n Simple_repeat Simple_repeat 1 27 0 10042 161 44 22 chr3 52410112 52410155 -175114423 + L1MA5 LINE L1 3483 3524 -2776 695 239 0 0 chr3 52410155 52410285 -175114293 - FLAM_A SINE Alu -3 130 1 10042 161 44 22 chr3 52410285 52410308 -175114270 + L1MA5 LINE L1 3524 3545 -2755 1656 183 25 3 chr3 52410308 52410592 -175113986 - AluJo SINE Alu -22 290 1 10042 161 44 22 chr3 52410592 52412478 -175112100 + L1MA5 LINE L1 3545 5387 -913 2416 68 7 23 chr3 52412478 52412788 -175111790 - AluY SINE Alu -6 305 1 2295 99 0 10 chr3 52412788 52413091 -175111487 - AluSq SINE Alu -13 300 1 10042 161 44 22 chr3 52413091 52413876 -175110702 + L1MA5 LINE L1 5386 6300 0 754 251 11 6 chr3 52413874 52414049 -175110529 + L1MC5 LINE L1 6611 6786 -1175 * 1783 145 11 7 chr3 52414049 52414318 -175110260 + AluJo SINE Alu 27 296 -16 2565 221 28 12 chr3 52414423 52415094 -175109484 + L1M4b LINE L1 2940 3621 -3336 802 263 101 6 chr3 52415085 52415412 -175109166 + L1MEc LINE L1 1450 1807 -5331 * 850 155 95 27 chr3 52415781 52415929 -175108649 + FRAM SINE Alu 4 161 -15 1028 284 37 34 chr3 52417232 52417612 -175106966 - LTR16C LTR ERVL -6 485 105 320 266 117 8 chr3 52418384 52418512 -175106066 + MIR SINE MIR 96 237 -25 576 42 0 0 chr3 52418638 52418709 -175105869 + (TG)n Simple_repeat Simple_repeat 2 72 0 1468 235 94 20 chr3 52419457 52419712 -175104866 + MLT2B1 LTR ERVL 1 296 -224 2293 118 125 8 chr3 52419712 52420095 -175104483 + MSTA LTR MaLR 1 428 0 1468 235 94 20 chr3 52420095 52420231 -175104347 + MLT2B1 LTR ERVL 296 421 -99 278 186 0 0 chr3 52421170 52421229 -175103349 + L2 LINE L2 2043 2101 -1213 1869 188 28 33 chr3 52421273 52421285 -175103293 - MER65C LTR ERV1 -12 659 648 2337 88 10 3 chr3 52421285 52421593 -175102985 + AluSx SINE Alu 1 310 -2 1869 188 28 33 chr3 52421593 52422022 -175102556 - MER65C LTR ERV1 -23 648 1 684 205 157 6 chr3 52422023 52422189 -175102389 + L2 LINE L2 3123 3313 0 2187 94 0 39 chr3 52422260 52422569 -175102009 + AluSq SINE Alu 1 297 -16 249 340 50 0 chr3 52422597 52422697 -175101881 - L2 LINE L2 -6 3266 3162 333 0 0 0 chr3 52424081 52424118 -175100460 + (CA)n Simple_repeat Simple_repeat 1 37 0 184 214 57 86 chr3 52424274 52424344 -175100234 + MIR SINE MIR 28 95 -167 1301 256 186 24 chr3 52424869 52425489 -175099089 + L1MC4a LINE L1 5291 6010 -1798 2119 133 0 3 chr3 52425881 52426182 -175098396 + AluSc SINE Alu 1 300 -9 482 292 21 7 chr3 52426369 52426513 -175098065 + L1ME LINE L1 5590 5735 -386 665 222 78 0 chr3 52426929 52427096 -175097482 - MIR SINE MIR -2 260 81 1786 164 25 0 chr3 52428272 52428567 -175096011 + AluJo SINE Alu 1 302 0 219 199 38 0 chr3 52428858 52428929 -175095649 - MIR SINE MIR -17 191 116 204 286 44 22 chr3 52429114 52429205 -175095373 + L2 LINE L2 1819 1911 -1403 2245 82 10 14 chr3 52429738 52430031 -175094547 - AluY SINE Alu -19 292 1 2302 90 0 7 chr3 52430032 52430331 -175094247 - AluSc SINE Alu -12 297 1 398 243 132 7 chr3 52430980 52431124 -175093454 - L1ME4a LINE L1 0 6121 5960 303 282 0 0 chr3 52431351 52431429 -175093149 - L1ME4a LINE L1 -476 5645 5568 24 91 0 0 chr3 52431533 52431599 -175092979 + AT_rich Low_complexity Low_complexity 1 66 0 180 303 45 15 chr3 52431816 52431882 -175092696 - L2 LINE L2 -210 3062 2995 358 268 213 31 chr3 52431979 52432266 -175092312 - L1ME4a LINE L1 -1550 4596 4258 327 289 84 49 chr3 52432274 52432606 -175091972 - L1MC/D LINE L1 -478 5643 5333 21 0 0 0 chr3 52432665 52432686 -175091892 + AT_rich Low_complexity Low_complexity 1 21 0 2306 102 0 0 chr3 52432790 52433083 -175091495 - AluSx SINE Alu -19 293 1 663 179 0 9 chr3 52433198 52433310 -175091268 - FLAM_A SINE Alu -22 120 10 255 311 0 0 chr3 52433411 52433501 -175091077 + L1P LINE L1 4924 5013 -1133 22 0 0 0 chr3 52433581 52433603 -175090975 + AT_rich Low_complexity Low_complexity 1 22 0 6357 215 58 21 chr3 52434229 52434357 -175090221 - L1MB8 LINE L1 -1 6177 6055 2485 66 3 3 chr3 52434357 52434659 -175089919 + AluY SINE Alu 1 302 -9 6357 215 58 21 chr3 52434659 52435486 -175089092 - L1MB8 LINE L1 -123 6055 5260 1826 161 4 0 chr3 52435486 52435759 -175088819 - AluJo SINE Alu -36 276 3 6357 215 58 21 chr3 52435759 52436611 -175087967 - L1MB8 LINE L1 -918 5260 4441 523 244 16 16 chr3 52436611 52436738 -175087840 - FLAM_A SINE Alu -6 127 1 6357 215 58 21 chr3 52436738 52437029 -175087549 - L1MB8 LINE L1 -1737 4441 4162 1416 160 28 94 chr3 52437029 52437347 -175087231 - AluJb SINE Alu -15 297 1 6357 215 58 21 chr3 52437347 52438011 -175086567 - L1MB8 LINE L1 -2016 4162 3304 235 355 81 24 chr3 52438012 52438342 -175086236 - L2 LINE L2 -237 3035 2690 2251 103 0 0 chr3 52438694 52439011 -175085567 - AluSx SINE Alu 0 317 1 223 254 68 0 chr3 52439472 52439531 -175085047 - MIR3 SINE MIR -15 193 131 2181 99 3 7 chr3 52442693 52442987 -175081591 + AluSq SINE Alu 1 293 -20 808 144 8 0 chr3 52443074 52443206 -175081372 + FLAM_C SINE Alu 1 133 0 27 29 0 0 chr3 52443206 52443240 -175081338 + AT_rich Low_complexity Low_complexity 1 34 0 262 197 0 66 chr3 52443722 52443783 -175080795 + MER2 DNA MER2_type 15 71 -274 225 214 0 0 chr3 52443814 52443856 -175080722 + MER2 DNA MER2_type 304 345 0 1769 185 0 20 chr3 52444410 52444712 -175079866 - AluJo SINE Alu -16 296 1 207 0 0 0 chr3 52447913 52447936 -175076642 + (CTG)n Simple_repeat Simple_repeat 1 23 0 270 267 38 53 chr3 52449007 52449138 -175075440 + MIR3 SINE MIR 61 189 -19 21 0 0 0 chr3 52449182 52449203 -175075375 + AT_rich Low_complexity Low_complexity 1 21 0 333 159 0 0 chr3 52449291 52449354 -175075224 + (TA)n Simple_repeat Simple_repeat 2 64 0 2209 125 3 0 chr3 52449484 52449795 -175074783 + AluSx SINE Alu 1 312 0 3188 165 98 38 chr3 52449821 52450486 -175074092 + MER67C LTR ERV1 1 705 -5 2318 70 27 0 chr3 52450516 52450815 -175073763 - AluYb8 SINE Alu -11 307 1 2057 126 0 0 chr3 52450825 52451131 -175073447 - AluSx SINE Alu 0 310 5 257 294 52 36 chr3 52451187 52451381 -175073197 + L1M4 LINE L1 3974 4170 -1976 1924 157 0 7 chr3 52451383 52451670 -175072908 + AluJb SINE Alu 15 299 -13 2481 75 0 3 chr3 52452908 52453215 -175071363 - AluY SINE Alu -5 306 1 513 141 0 0 chr3 52453337 52453436 -175071142 + (CA)n Simple_repeat Simple_repeat 2 100 0 22 0 0 0 chr3 52453628 52453650 -175070928 + AT_rich Low_complexity Low_complexity 1 22 0 228 235 0 0 chr3 52456202 52456253 -175068325 + MIR3 SINE MIR 158 208 0 327 190 0 0 chr3 52458425 52458483 -175066095 + FLAM_A SINE Alu 43 100 -33 327 212 41 20 chr3 52458499 52458645 -175065933 + CT-rich Low_complexity Low_complexity 4 152 0 1743 161 44 7 chr3 52458648 52458946 -175065632 - AluSq SINE Alu -2 311 3 893 163 56 51 chr3 52458949 52459127 -175065451 + AluJo SINE Alu 104 282 -30 202 27 0 54 chr3 52459133 52459170 -175065408 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2290 105 0 7 chr3 52460680 52460985 -175063593 + AluSx SINE Alu 1 303 -9 286 318 151 12 chr3 52461139 52461397 -175063181 + L2 LINE L2 3014 3307 -6 1503 193 137 21 chr3 52462037 52462416 -175062162 + MSTA LTR MaLR 1 423 -5 9986 123 8 45 chr3 52462423 52462793 -175061785 + MSTA-int LTR MaLR 3 385 -1195 2404 68 41 0 chr3 52462793 52463087 -175061491 - AluY SINE Alu -5 306 1 9986 123 8 45 chr3 52463087 52464354 -175060224 + MSTA-int LTR MaLR 385 1580 0 1433 162 255 14 chr3 52464354 52464699 -175059879 + MSTA LTR MaLR 1 428 0 2376 68 0 4 chr3 52464979 52465289 -175059289 + AluY SINE Alu 1 309 0 2594 43 7 0 chr3 52465299 52465602 -175058976 + AluY SINE Alu 1 305 -6 5905 107 20 5 chr3 52465603 52466571 -175058007 - L1MA2 LINE L1 -182 6122 5140 1222 242 59 23 chr3 52466569 52467011 -175057567 - L1MEc LINE L1 -2618 3597 3140 * 761 181 0 36 chr3 52467022 52467160 -175057418 - FLAM_A SINE Alu 0 133 1 315 122 0 0 chr3 52467168 52467217 -175057361 + (TG)n Simple_repeat Simple_repeat 2 50 0 235 239 30 0 chr3 52467234 52467301 -175057277 - L1MEc LINE L1 -3110 3105 3037 1484 196 14 34 chr3 52467301 52467597 -175056981 - AluJo SINE Alu -22 290 1 1992 141 3 31 chr3 52467603 52467923 -175056655 - AluJb SINE Alu -1 311 1 436 217 104 0 chr3 52467928 52468043 -175056535 - L1MEc LINE L1 -4282 2114 1988 592 159 234 35 chr3 52468064 52468209 -175056369 + MER20B DNA MER1_type 41 214 -5 333 292 23 35 chr3 52468210 52468381 -175056197 - L1MEc LINE L1 -4633 1763 1595 715 274 83 0 chr3 52468938 52469142 -175055436 + MER58A DNA MER1_type 4 224 0 305 266 65 91 chr3 52469318 52469514 -175055064 + MLT1L LTR MaLR 16 206 -409 282 138 77 0 chr3 52469514 52469579 -175054999 - MLT1J LTR MaLR 0 549 480 199 241 37 19 chr3 52470007 52470061 -175054517 + L2 LINE L2 3253 3307 -6 2359 43 20 36 chr3 52472144 52472445 -175052133 + AluY SINE Alu 4 299 -12 778 263 78 0 chr3 52473727 52473932 -175050646 - MER58A DNA MER1_type 0 224 4 2111 145 3 0 chr3 52474779 52475090 -175049488 + AluSx SINE Alu 1 312 0 348 257 79 93 chr3 52475293 52475507 -175049071 - MLT1J LTR MaLR -71 440 230 2019 139 36 0 chr3 52475603 52475952 -175048626 - AluSx SINE Alu 0 360 1 198 258 21 75 chr3 52476305 52476350 -175048228 + MIR SINE MIR 60 99 -163 2056 18 0 0 chr3 52476350 52476573 -175048005 - AluYa5 SINE Alu -7 304 82 198 258 21 75 chr3 52476573 52476620 -175047958 + MIR SINE MIR 99 147 -115 2577 60 0 0 chr3 52477202 52477500 -175047078 + AluY SINE Alu 1 298 -13 817 114 8 8 chr3 52477523 52477654 -175046924 - L1PB1 LINE L1 -3 6148 6018 252 0 0 0 chr3 52477792 52477820 -175046758 + (TA)n Simple_repeat Simple_repeat 1 28 0 2209 125 3 0 chr3 52477950 52478261 -175046317 + AluSx SINE Alu 1 312 0 3188 163 97 37 chr3 52478287 52478957 -175045621 + MER67C LTR ERV1 1 710 0 2281 89 0 10 chr3 52478984 52479287 -175045291 - AluY SINE Alu -11 300 1 23 0 0 0 chr3 52479300 52479323 -175045255 + AT_rich Low_complexity Low_complexity 1 23 0 554 163 0 0 chr3 52479370 52479456 -175045122 + FLAM_C SINE Alu 37 122 -21 552 68 0 0 chr3 52479479 52479552 -175045026 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 1226 116 0 6 chr3 52479674 52479847 -175044731 + AluSg/x SINE Alu 127 298 -14 1444 137 54 0 chr3 52479859 52480137 -175044441 + L1MA8 LINE L1 5999 6291 0 2580 54 0 0 chr3 52480605 52480902 -175043676 + AluY SINE Alu 1 297 -14 2322 96 0 3 chr3 52481265 52481558 -175043020 + AluSx SINE Alu 1 292 -20 23 33 0 0 chr3 52481558 52481588 -175042990 + AT_rich Low_complexity Low_complexity 1 30 0 1997 165 12 39 chr3 52482995 52483271 -175041307 + L1MB8 LINE L1 5783 6046 -132 2500 63 3 3 chr3 52483271 52483573 -175041005 - AluY SINE Alu -9 302 1 1997 165 12 39 chr3 52483573 52483702 -175040876 + L1MB8 LINE L1 6046 6177 -1 22 0 0 0 chr3 52484330 52484352 -175040226 + AT_rich Low_complexity Low_complexity 1 22 0 624 179 0 9 chr3 52484622 52484734 -175039844 + FLAM_A SINE Alu 10 120 -22 2043 140 0 0 chr3 52484849 52485141 -175039437 + AluSx SINE Alu 1 292 -20 290 224 0 53 chr3 52485284 52485360 -175039218 - L1MC4a LINE L1 -1910 5898 5827 710 205 8 0 chr3 52485919 52486046 -175038532 + AluJb SINE Alu 161 288 -24 649 246 101 11 chr3 52486057 52486236 -175038342 + MIR SINE MIR 66 260 -2 2504 77 0 0 chr3 52486323 52486623 -175037955 - AluSp SINE Alu -13 300 1 24 0 0 0 chr3 52486623 52486647 -175037931 + AT_rich Low_complexity Low_complexity 1 24 0 262 197 0 66 chr3 52487023 52487084 -175037494 + MER2 DNA MER2_type 15 71 -274 2934 127 46 92 chr3 52488910 52489129 -175035449 + THE1-int LTR MaLR 152 379 -1201 2404 68 41 0 chr3 52489129 52489423 -175035155 - AluY SINE Alu -5 306 1 2934 127 46 92 chr3 52489423 52489879 -175034699 + THE1-int LTR MaLR 379 796 -784 707 214 21 0 chr3 52490287 52490427 -175034151 - FRAM SINE Alu -23 153 11 1044 209 44 20 chr3 52490441 52490738 -175033840 - MER20B DNA MER1_type -42 741 438 346 143 102 61 chr3 52490746 52490760 -175033818 - FLAM_A SINE Alu -169 133 121 664 152 0 0 chr3 52490760 52490872 -175033706 - L1MA3 LINE L1 0 6305 6194 346 143 102 61 chr3 52490872 52490955 -175033623 - FLAM_A SINE Alu -181 121 32 2206 119 3 13 chr3 52491138 52491449 -175033129 - AluSx SINE Alu -4 308 1 417 267 169 19 chr3 52491455 52491721 -175032857 + L1MC4a LINE L1 5643 5948 -1860 1080 154 62 1 chr3 52491736 52492016 -175032562 + L1MC/D LINE L1 5185 5478 -748 673 128 0 0 chr3 52492016 52492110 -175032468 + AluS SINE Alu 3 96 -216 219 329 81 19 chr3 52492228 52492389 -175032189 + MIR SINE MIR 49 219 -43 254 171 148 102 chr3 52493169 52493257 -175031321 - MIR SINE MIR -68 194 103 1764 181 3 3 chr3 52495557 52495849 -175028729 + AluJb SINE Alu 1 292 -20 290 224 0 53 chr3 52495992 52496068 -175028510 - L1MC4a LINE L1 -1910 5898 5827 200 192 19 39 chr3 52496463 52496515 -175028063 + (CATA)n Simple_repeat Simple_repeat 2 52 0 419 298 82 23 chr3 52497568 52497739 -175026839 + MIR3 SINE MIR 28 208 0 650 252 25 0 chr3 52498399 52498558 -175026020 + MIR SINE MIR 91 253 -9 539 241 139 23 chr3 52499477 52499501 -175025077 + MIR SINE MIR 14 34 -228 2279 100 0 0 chr3 52499501 52499802 -175024776 + AluSx SINE Alu 1 301 -11 539 241 139 23 chr3 52499802 52499993 -175024585 + MIR SINE MIR 34 254 -8 935 160 26 0 chr3 52500343 52500499 -175024079 + AluJb SINE Alu 137 296 -16 1350 192 67 34 chr3 52500786 52500966 -175023612 - AluJo SINE Alu -5 307 112 318 26 0 0 chr3 52500966 52501005 -175023573 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1350 192 67 34 chr3 52501005 52501121 -175023457 - AluJo SINE Alu -200 112 1 338 291 165 0 chr3 52501499 52501626 -175022952 - L2 LINE L2 -9 3263 3116 1388 183 10 33 chr3 52502063 52502363 -175022215 + AluJb SINE Alu 3 295 -17 783 159 0 0 chr3 52502767 52502893 -175021685 - AluSg/x SINE Alu -14 296 171 208 139 0 0 chr3 52503349 52503385 -175021193 + (A)n Simple_repeat Simple_repeat 1 36 0 180 0 0 0 chr3 52504245 52504265 -175020313 + (T)n Simple_repeat Simple_repeat 1 20 0 2271 110 3 0 chr3 52507972 52508272 -175016306 + AluSx SINE Alu 1 301 -11 1659 171 145 18 chr3 52508987 52509367 -175015211 + MSTA LTR MaLR 1 428 0 10230 120 7 43 chr3 52509369 52509737 -175014841 + MSTA-int LTR MaLR 3 383 -1197 2404 68 41 0 chr3 52509737 52510031 -175014547 - AluY SINE Alu -5 306 1 10230 120 7 43 chr3 52510031 52511299 -175013279 + MSTA-int LTR MaLR 383 1580 0 1433 162 255 14 chr3 52511299 52511644 -175012934 + MSTA LTR MaLR 1 428 0 2485 76 13 0 chr3 52511924 52512225 -175012353 + AluY SINE Alu 1 305 -6 1853 170 7 0 chr3 52513008 52513297 -175011281 + AluSx SINE Alu 1 291 -21 644 186 152 39 chr3 52513452 52513656 -175010922 + MLT2C1 LTR ERVL 1 227 -170 1608 184 34 3 chr3 52513658 52514022 -175010556 + AluJo SINE Alu 1 373 0 419 207 36 93 chr3 52514023 52514186 -175010392 + MLT2C1 LTR ERVL 188 363 -51 2205 141 0 0 chr3 52514186 52514492 -175010086 - AluSx SINE Alu -6 306 1 207 0 0 0 chr3 52514537 52514560 -175010018 + (CA)n Simple_repeat Simple_repeat 1 23 0 250 182 0 0 chr3 52514565 52514609 -175009969 + MLT2F LTR ERVL 620 663 0 340 224 63 28 chr3 52516166 52516309 -175008269 + Charlie7 DNA MER1_type 2458 2605 -7 263 309 78 15 chr3 52517728 52517924 -175006654 + MIR SINE MIR 38 245 -17 217 314 43 29 chr3 52519188 52519328 -175005250 + L2 LINE L2 2322 2463 -851 * 826 223 30 5 chr3 52519310 52519512 -175005066 + MIR SINE MIR 56 262 0 1828 149 18 0 chr3 52519739 52520014 -175004564 + AluJb SINE Alu 1 280 -32 212 0 36 0 chr3 52520015 52520043 -175004535 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 263 290 29 36 chr3 52520285 52520423 -175004155 + L2 LINE L2 2976 3112 -160 191 329 0 0 chr3 52520474 52520556 -175004022 + L2 LINE L2 3169 3250 -63 1828 155 177 14 chr3 52521268 52521636 -175002942 + MSTA LTR MaLR 1 428 0 226 269 0 0 chr3 52521770 52521822 -175002756 + LTR30 LTR ERV1 1 52 -670 1272 125 161 2 chr3 52521822 52522063 -175002515 + LTR12 LTR ERV1 57 2017 -421 340 219 36 63 chr3 52522063 52522174 -175002404 + LTR30 LTR ERV1 375 642 -80 695 132 52 81 chr3 52522174 52522310 -175002268 + pTR5 LTR ERV1 313 444 -1994 * 35211 113 21 20 chr3 52522285 52528045 -174996533 + HERV9 LTR ERV1 55 4984 -3415 4507 125 2 0 chr3 52528041 52528681 -174995897 + HERV9 LTR ERV1 7757 8397 -2 * 251 250 0 0 chr3 52528684 52528736 -174995842 + LTR30 LTR ERV1 1 52 -670 1277 93 111 76 chr3 52528736 52528961 -174995617 + LTR12 LTR ERV1 53 285 -429 307 239 0 0 chr3 52528962 52529033 -174995545 + LTR30 LTR ERV1 553 623 -99 792 143 25 0 chr3 52529034 52529153 -174995425 + LTR12 LTR ERV1 359 480 -234 240 259 24 47 chr3 52529522 52529607 -174994971 - MIR3 SINE MIR -26 182 100 342 253 27 62 chr3 52529835 52529981 -174994597 + MIR SINE MIR 56 196 -66 188 152 0 0 chr3 52530238 52530271 -174994307 - L2 LINE L2 -337 2976 2944 2385 97 0 0 chr3 52530472 52530772 -174993806 - AluY SINE Alu -11 300 1 208 193 45 34 chr3 52532693 52532781 -174991797 + (TATAA)n Simple_repeat Simple_repeat 2 90 0 1447 106 18 5 chr3 52532798 52533016 -174991562 - MER6 DNA MER2_type -4 861 641 910 177 41 0 chr3 52533045 52533192 -174991386 + FAM SINE Alu 4 156 -19 28 0 0 0 chr3 52533198 52533226 -174991352 + AT_rich Low_complexity Low_complexity 1 28 0 1098 186 30 0 chr3 52533344 52533543 -174991035 + MER3 DNA MER1_type 1 205 -4 1708 154 21 21 chr3 52533554 52533840 -174990738 - AluJb SINE Alu -26 286 1 401 306 91 16 chr3 52534055 52534307 -174990271 + L2 LINE L2 2085 2355 -959 207 0 0 0 chr3 52534500 52534523 -174990055 + (TTG)n Simple_repeat Simple_repeat 3 25 0 1371 210 119 65 chr3 52534555 52535050 -174989528 - Charlie1b DNA MER1_type 0 523 2 213 94 0 0 chr3 52535905 52535937 -174988641 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 383 261 157 13 chr3 52535952 52536105 -174988473 - L2 LINE L2 -52 3261 3087 2387 165 87 32 chr3 52536474 52536966 -174987612 + MLT2B1 LTR ERVL 2 520 0 479 278 71 18 chr3 52537497 52537666 -174986912 + MIR SINE MIR 82 259 -3 4617 60 25 0 chr3 52538500 52539071 -174985507 - LTR14C LTR ERVK -2 585 1 205 210 56 35 chr3 52539586 52539729 -174984849 + (CCGCG)n Simple_repeat Simple_repeat 4 149 0 233 303 17 0 chr3 52539858 52539977 -174984601 + C-rich Low_complexity Low_complexity 2 122 0 268 256 0 12 chr3 52540009 52540091 -174984487 + AluY SINE Alu 216 296 -5 1690 152 0 21 chr3 52540161 52540450 -174984128 - AluJo SINE Alu -29 283 1 378 328 80 10 chr3 52540608 52540809 -174983769 - L2 LINE L2 -269 3044 2830 587 277 5 38 chr3 52540893 52541075 -174983503 - L2 LINE L2 -674 2640 2464 2194 103 3 10 chr3 52541075 52541377 -174983201 + AluSq SINE Alu 1 300 -13 587 277 5 38 chr3 52541377 52541407 -174983171 - L2 LINE L2 -850 2464 2435 331 268 10 41 chr3 52541439 52541633 -174982945 - L1M4 LINE L1 -3734 2412 2225 1576 128 124 7 chr3 52542016 52542290 -174982288 - AluSg1 SINE Alu -3 306 1 291 133 22 156 chr3 52542590 52542680 -174981898 + MER94 DNA DNA 3 80 -54 621 136 9 27 chr3 52544973 52545083 -174979495 - FLAM_A SINE Alu -3 139 32 2093 113 0 16 chr3 52545151 52545460 -174979118 + AluSq SINE Alu 1 304 -9 2106 120 3 0 chr3 52545790 52546089 -174978489 - AluJb SINE Alu -7 305 6 319 227 15 0 chr3 52546145 52546211 -174978367 + MER5A DNA MER1_type 4 70 -119 24 67 0 0 chr3 52546234 52546279 -174978299 + AT_rich Low_complexity Low_complexity 1 45 0 348 236 217 0 chr3 52546281 52546387 -174978191 + MER5A DNA MER1_type 61 189 0 381 273 113 13 chr3 52546768 52546918 -174977660 - MER5B DNA MER1_type 0 178 14 216 0 0 0 chr3 52548700 52548724 -174975854 + (A)n Simple_repeat Simple_repeat 1 24 0 209 306 83 0 chr3 52549344 52549416 -174975162 + MER5A DNA MER1_type 2 79 -110 41 127 0 0 chr3 52549420 52549475 -174975103 + AT_rich Low_complexity Low_complexity 1 55 0 27 0 0 0 chr3 52549749 52549776 -174974802 + AT_rich Low_complexity Low_complexity 1 27 0 189 0 0 0 chr3 52549786 52549807 -174974771 + (A)n Simple_repeat Simple_repeat 1 21 0 1333 193 49 93 chr3 52549957 52550428 -174974150 - LTR7 LTR ERV1 0 450 1 1288 172 95 42 chr3 52550432 52550717 -174973861 - AluJo SINE Alu -2 300 1 514 293 72 6 chr3 52550940 52551121 -174973457 + MIR SINE MIR 20 212 -50 272 299 88 10 chr3 52552013 52552169 -174972409 + MIR SINE MIR 31 203 -59 268 278 45 15 chr3 52552202 52552335 -174972243 + L1MC4a LINE L1 7219 7355 -453 459 249 60 27 chr3 52552338 52552523 -174972055 + L1MC5 LINE L1 7301 7491 -470 618 191 40 0 chr3 52552675 52552801 -174971777 + L1MD2 LINE L1 4817 4947 -1199 3879 189 68 23 chr3 52552808 52553951 -174970627 + L1MD2 LINE L1 5062 6230 -12 525 250 125 25 chr3 52553994 52554351 -174970227 + L1MC4 LINE L1 7530 8041 -1 309 326 85 36 chr3 52555170 52555394 -174969184 + L1M4 LINE L1 3749 3983 -2163 267 219 175 69 chr3 52555498 52555744 -174968834 + L1ME LINE L1 5536 5807 -314 257 0 0 29 chr3 52555965 52555999 -174968579 + (TG)n Simple_repeat Simple_repeat 2 34 0 343 220 8 76 chr3 52556170 52556302 -174968276 - L1ME4a LINE L1 -32 6089 5967 587 211 45 64 chr3 52557346 52557445 -174967133 + MER5B DNA MER1_type 1 97 -81 1631 161 7 23 chr3 52557445 52557750 -174966828 + AluJb SINE Alu 3 302 -10 587 211 45 64 chr3 52557750 52557806 -174966772 + MER5B DNA MER1_type 97 153 -25 514 203 82 93 chr3 52557826 52558008 -174966570 - MER5A DNA MER1_type 0 189 10 2466 150 44 79 chr3 52558816 52559296 -174965282 - LTR32 LTR ERVL 0 471 9 320 264 35 9 chr3 52560199 52560335 -174964243 + MIR SINE MIR 11 151 -57 * 335 197 145 60 chr3 52560333 52560450 -174964128 - L2 LINE L2 -5 3308 3182 24 41 0 20 chr3 52560728 52560749 -174963829 + AT_rich Low_complexity Low_complexity 1 21 -27 2178 103 0 0 chr3 52560749 52561041 -174963537 + AluSx SINE Alu 1 292 -20 24 41 0 20 chr3 52561041 52561068 -174963510 + AT_rich Low_complexity Low_complexity 21 48 0 1936 105 20 7 chr3 52562291 52562586 -174961992 - AluSq SINE Alu -14 299 1 1984 123 3 26 chr3 52562586 52562894 -174961684 - AluSx SINE Alu -10 302 1 1134 220 34 0 chr3 52563770 52564006 -174960572 - MIR SINE MIR -11 251 8 312 313 39 23 chr3 52567316 52567444 -174957134 - MIR SINE MIR -63 145 16 1885 129 42 7 chr3 52567604 52567756 -174956822 - AluSx SINE Alu -15 297 152 2033 110 34 0 chr3 52567756 52568047 -174956531 - AluSg SINE Alu -9 301 1 1885 129 42 7 chr3 52568047 52568181 -174956397 - AluSx SINE Alu -160 152 1 185 286 0 0 chr3 52568689 52568738 -174955840 - MER5B DNA MER1_type -129 49 1 316 238 0 11 chr3 52568757 52568888 -174955690 + MER5B DNA MER1_type 1 178 0 316 250 59 59 chr3 52570695 52570831 -174953747 + L1ME4a LINE L1 5874 6009 -112 29 60 0 0 chr3 52570968 52571018 -174953560 + AT_rich Low_complexity Low_complexity 1 50 0 921 248 222 56 chr3 52571210 52572097 -174952481 - HAL1 LINE L1 -362 2145 1112 318 331 138 50 chr3 52572222 52572763 -174951815 - HAL1 LINE L1 -1594 913 103 2175 86 0 17 chr3 52572763 52573064 -174951514 - AluSq SINE Alu -17 296 1 318 331 138 50 chr3 52573064 52573116 -174951462 - HAL1 LINE L1 -2404 103 57 551 252 155 4 chr3 52573129 52573387 -174951191 + L1ME4a LINE L1 5601 5897 -224 276 136 0 0 chr3 52573478 52573522 -174951056 + L1ME4a LINE L1 6072 6115 -6 328 259 74 19 chr3 52574277 52574385 -174950193 - MIR SINE MIR 0 262 149 873 254 265 4 chr3 52574735 52575207 -174949371 - L1MC4a LINE L1 -1914 5894 5300 21 0 0 0 chr3 52575327 52575348 -174949230 + AT_rich Low_complexity Low_complexity 1 21 0 321 135 0 0 chr3 52579249 52579301 -174945277 + (TGGA)n Simple_repeat Simple_repeat 3 54 0 2443 105 16 35 chr3 52579452 52579517 -174945061 - THE1B LTR MaLR 0 364 299 2472 44 3 0 chr3 52579517 52579812 -174944766 + AluY SINE Alu 1 296 -15 2443 105 16 35 chr3 52579812 52580117 -174944461 - THE1B LTR MaLR -65 299 1 185 0 0 39 chr3 52580785 52580811 -174943767 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 796 259 99 25 chr3 52581290 52581533 -174943045 - MIR SINE MIR 0 262 2 270 301 126 0 chr3 52582979 52583082 -174941496 + MIR3 SINE MIR 87 202 -6 452 315 101 52 chr3 52583311 52583619 -174940959 - L2 LINE L2 -1 3271 2949 386 223 270 24 chr3 52584083 52584294 -174940284 - LTR33 LTR ERVL -256 265 3 539 240 150 15 chr3 52584664 52584864 -174939714 - MIR SINE MIR -9 253 27 15195 106 44 22 chr3 52585774 52586779 -174937799 - Tigger3(Golem) DNA MER2_type 0 3029 2047 2223 83 3 35 chr3 52586779 52587091 -174937487 - AluSg SINE Alu -8 302 1 15195 106 44 22 chr3 52587091 52589051 -174935527 - Tigger3(Golem) DNA MER2_type -982 2047 1 264 297 79 10 chr3 52589399 52589500 -174935078 - L3 LINE CR1 -769 808 701 671 235 149 7 chr3 52591071 52591283 -174933295 + MIR SINE MIR 25 262 0 1189 128 5 16 chr3 52591435 52591623 -174932955 + MER66B LTR ERV1 101 286 -200 2369 181 63 7 chr3 52592296 52592754 -174931824 + MER66B LTR ERV1 1 484 -2 546 129 7 163 chr3 52592774 52592921 -174931657 - MER92B LTR ERV1 0 636 513 277 229 59 59 chr3 52592921 52593039 -174931539 - MER65A LTR ERV1 0 445 328 1343 145 29 19 chr3 52593041 52593275 -174931303 - LTR15 LTR ERV1 0 595 259 531 210 43 162 chr3 52593271 52593647 -174930931 - MER65A LTR ERV1 -114 331 1 * 739 170 7 15 chr3 52593673 52593808 -174930770 - MER66B LTR ERV1 -257 229 96 303 298 18 18 chr3 52593804 52593918 -174930660 - MER92B LTR ERV1 -154 482 369 * 1492 194 12 0 chr3 52593925 52594173 -174930405 - MLT2B2 LTR ERVL -3 512 262 996 254 41 19 chr3 52594173 52594441 -174930137 - MER41E LTR ERV1 0 512 239 1710 108 23 19 chr3 52594686 52594944 -174929634 - MLT2B3 LTR ERVL -295 259 1 1898 183 56 14 chr3 52594957 52595312 -174929266 - MER92B LTR ERV1 -266 370 1 273 216 11 59 chr3 52595356 52595482 -174929096 + LTR48B LTR ERV1 4 148 -394 2095 96 11 18 chr3 52595483 52595799 -174928779 + AluSg SINE Alu 4 317 0 1982 138 3 14 chr3 52595815 52596106 -174928472 + AluSq SINE Alu 1 288 -25 863 159 185 21 chr3 52596112 52596301 -174928277 + MER41C LTR ERV1 220 439 -115 7873 156 55 15 chr3 52596301 52599125 -174925453 + L1PB1 LINE L1 1729 4674 -2188 2170 132 0 7 chr3 52599125 52599435 -174925143 + AluSq SINE Alu 1 308 -5 7873 156 55 15 chr3 52599435 52599469 -174925109 + L1PB1 LINE L1 4674 4705 -2157 * 10950 26 15 2 chr3 52599467 52600749 -174923829 - L1PA3 LINE L1 -847 5299 4001 7460 42 0 1 chr3 52600749 52601588 -174922990 + L1PA3 LINE L1 5302 6150 -5 5648 153 14 106 chr3 52601596 52602688 -174921890 + L1PB1 LINE L1 4691 5882 -985 1379 137 43 5 chr3 52602688 52602899 -174921679 + AluSq SINE Alu 81 299 -14 2619 64 0 0 chr3 52602902 52603213 -174921365 + AluY SINE Alu 1 311 0 5648 153 14 106 chr3 52603213 52604183 -174920395 + L1PB1 LINE L1 5884 6750 -117 2065 127 0 23 chr3 52604183 52604490 -174920088 + AluY SINE Alu 1 300 -11 274 266 66 143 chr3 52604902 52605161 -174919417 - L2 LINE L2 -469 2845 2607 1476 163 33 83 chr3 52605516 52605751 -174918827 + AluJo SINE Alu 6 224 -88 2281 91 10 7 chr3 52605751 52606049 -174918529 + AluSp SINE Alu 1 299 -14 1476 163 33 83 chr3 52606049 52606114 -174918464 + AluJo SINE Alu 224 291 -21 23 0 0 0 chr3 52606151 52606174 -174918404 + AT_rich Low_complexity Low_complexity 1 23 0 377 277 130 27 chr3 52606522 52606822 -174917756 + L1ME4a LINE L1 5262 5592 -2216 2335 83 0 7 chr3 52606972 52607273 -174917305 + AluSq SINE Alu 1 299 -14 811 176 7 27 chr3 52607607 52607755 -174916823 + AluJb SINE Alu 153 297 -15 362 200 205 96 chr3 52608030 52608445 -174916133 + L1ME4a LINE L1 5659 6118 -3 186 43 0 0 chr3 52608462 52608485 -174916093 + (CAAAAA)n Simple_repeat Simple_repeat 1 23 0 252 304 178 0 chr3 52608540 52608752 -174915826 + MIR3 SINE MIR 30 262 0 851 224 45 45 chr3 52608851 52609074 -174915504 - MER58A DNA MER1_type 0 224 2 598 268 60 12 chr3 52609496 52609582 -174914996 + MIR SINE MIR 63 143 -119 2308 103 3 0 chr3 52609582 52609894 -174914684 + AluSp SINE Alu 1 313 0 598 268 60 12 chr3 52609894 52609996 -174914582 + MIR SINE MIR 143 257 -5 207 100 0 0 chr3 52610444 52610474 -174914104 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 204 250 0 17 chr3 52610480 52610540 -174914038 - L2 LINE L2 -20 3252 3194 275 292 42 0 chr3 52611693 52611765 -174912813 + L2 LINE L2 3190 3264 -8 1141 177 167 54 chr3 52612031 52612325 -174912253 - MLT1A1 LTR MaLR -38 327 1 236 167 24 0 chr3 52612663 52612705 -174911873 + L2 LINE L2 3251 3293 -20 992 259 123 26 chr3 52612744 52613165 -174911413 + MLT1C LTR MaLR 6 467 0 1051 145 0 0 chr3 52613333 52613492 -174911086 + FAM SINE Alu 1 43 -6 366 209 12 0 chr3 52613501 52613587 -174910991 + HERVL68 LTR ERVL 722 808 -2229 1185 189 5 0 chr3 52613688 52613889 -174910689 - AluSx SINE Alu -110 202 1 664 41 10 41 chr3 52613960 52614058 -174910520 + Tigger7 DNA MER2_type 2233 2327 -164 1440 111 69 0 chr3 52614061 52614278 -174910300 + Tigger7 DNA MER2_type 2259 2490 -1 604 251 99 0 chr3 52614289 52614460 -174910118 - MER5A DNA MER1_type 0 189 2 276 278 72 10 chr3 52614492 52614589 -174909989 - L2 LINE L2 -2 3311 3209 239 284 59 0 chr3 52614589 52614691 -174909887 + L1M4 LINE L1 4713 4820 -1326 2434 71 0 13 chr3 52614860 52615170 -174909408 + AluY SINE Alu 3 308 -3 1810 164 13 3 chr3 52615536 52615840 -174908738 - AluJo SINE Alu -5 307 1 1123 139 64 0 chr3 52616051 52616223 -174908355 - Charlie3 DNA MER1_type -2527 183 1 363 247 11 0 chr3 52616224 52616313 -174908265 + MIR SINE MIR 165 254 -8 217 211 0 0 chr3 52616505 52616543 -174908035 + polypyrimidine Low_complexity Low_complexity 4 41 0 344 276 123 53 chr3 52616756 52617057 -174907521 + L1M4 LINE L1 4111 4432 -1714 2086 113 0 35 chr3 52617130 52617441 -174907137 + AluY SINE Alu 1 300 -11 212 193 18 0 chr3 52617447 52617504 -174907074 + (TTATA)n Simple_repeat Simple_repeat 5 62 0 2009 145 0 13 chr3 52617730 52618033 -174906545 - AluJo SINE Alu -13 299 1 729 196 0 38 chr3 52618417 52618550 -174906028 + FLAM_A SINE Alu 1 128 -5 2037 125 3 30 chr3 52618558 52618862 -174905716 + AluSx SINE Alu 5 300 -12 2622 150 17 2 chr3 52619162 52619568 -174905010 - LOR1a LTR ERV1 0 497 86 3741 101 125 17 chr3 52619668 52620322 -174904256 + MER51A-int LTR ERV1 4800 5524 -2596 1310 115 0 5 chr3 52620312 52620504 -174904074 + MER51A-int LTR ERV1 5801 5991 -2129 * 1706 264 34 17 chr3 52620578 52621259 -174903319 + MER51A-int LTR ERV1 5893 7816 0 2266 98 6 55 chr3 52621261 52621635 -174902943 + MER51A LTR ERV1 1 446 -188 526 82 55 0 chr3 52621631 52621704 -174902874 + MER51A LTR ERV1 558 634 0 * 394 288 64 80 chr3 52621722 52622111 -174902467 - MLT1J LTR MaLR 0 511 129 364 228 58 116 chr3 52622204 52622550 -174902028 + L1ME4a LINE L1 5794 6119 -2 639 218 82 0 chr3 52623245 52623392 -174901186 - MIR SINE MIR -56 206 48 180 131 16 148 chr3 52625006 52625067 -174899511 + L2 LINE L2 3218 3270 -2 2053 135 0 7 chr3 52625479 52625776 -174898802 + AluSx SINE Alu 1 295 -17 1536 143 130 26 chr3 52625862 52626169 -174898409 + MER44D DNA MER2_type 1 609 0 249 251 126 52 chr3 52626715 52626906 -174897672 - L2 LINE L2 -11 3302 3098 930 155 21 48 chr3 52627060 52627247 -174897331 - Tigger1 DNA MER2_type -2 2416 2235 479 69 69 0 chr3 52627232 52627304 -174897274 + Tigger1 DNA MER2_type 1564 1640 -778 * 10425 95 40 36 chr3 52627300 52628065 -174896513 - Tigger1 DNA MER2_type -169 2249 1489 2067 137 0 3 chr3 52628065 52628364 -174896214 - AluJb SINE Alu -14 298 1 10425 95 40 36 chr3 52628364 52628848 -174895730 - Tigger1 DNA MER2_type -929 1489 989 1916 138 0 4 chr3 52628848 52629116 -174895462 + AluJb SINE Alu 37 303 -9 10425 95 40 36 chr3 52629116 52629484 -174895094 - Tigger1 DNA MER2_type -1429 989 624 2475 53 3 0 chr3 52629588 52629888 -174894690 - AluY SINE Alu -10 301 1 2187 88 10 30 chr3 52629888 52630192 -174894386 - AluSx SINE Alu -13 299 1 28 0 0 0 chr3 52630197 52630225 -174894353 + AT_rich Low_complexity Low_complexity 1 28 0 2260 103 0 0 chr3 52632509 52632800 -174891778 - AluSc SINE Alu -18 291 1 2005 125 10 17 chr3 52632892 52633188 -174891390 - AluSx SINE Alu -18 294 1 1357 102 6 0 chr3 52633352 52633528 -174891050 - AluSc SINE Alu -132 177 1 2018 118 10 17 chr3 52633620 52633916 -174890662 - AluSx SINE Alu -18 294 1 1944 201 57 23 chr3 52634039 52634516 -174890062 - L1ME3 LINE L1 -3 6159 5667 2090 134 10 3 chr3 52634566 52634865 -174889713 - AluSx SINE Alu -11 301 1 232 239 0 75 chr3 52634944 52635011 -174889567 + MIR SINE MIR 7 68 -194 228 203 14 43 chr3 52635122 52635191 -174889387 - L1MD3 LINE L1 0 7995 7929 3225 243 105 65 chr3 52635272 52635780 -174888798 - L1M4b LINE L1 -5546 1313 827 1966 113 3 25 chr3 52635780 52636062 -174888516 - AluSx SINE Alu -31 281 6 3225 243 105 65 chr3 52636062 52636728 -174887850 - L1M4b LINE L1 -6032 827 83 2610 58 0 0 chr3 52636728 52637038 -174887540 - AluY SINE Alu -1 310 1 3225 243 105 65 chr3 52637038 52637122 -174887456 - L1M4b LINE L1 -6776 83 4 1124 410 36 36 chr3 52637131 52637557 -174887021 - L2 LINE L2 -609 2705 2277 2457 70 0 0 chr3 52637557 52637859 -174886719 + AluY SINE Alu 1 302 -9 1124 410 36 36 chr3 52637859 52637937 -174886641 - L2 LINE L2 -1036 2278 2201 2225 97 7 10 chr3 52637937 52638247 -174886331 + AluSc SINE Alu 1 309 0 1173 142 19 9 chr3 52638252 52638584 -174885994 - MER61D LTR ERV1 0 501 143 17192 120 38 27 chr3 52638592 52641924 -174882654 - MER61D-int LTR ERV1 0 6015 1934 3519 156 40 6 chr3 52641926 52642640 -174881938 - MER61D-int LTR ERV1 -3576 2381 1407 1859 158 27 92 chr3 52642632 52643477 -174881101 - MER61D-int LTR ERV1 -4377 2644 193 * 258 229 60 0 chr3 52643529 52643612 -174880966 - MER61D-int LTR ERV1 -6478 518 431 * 730 191 0 143 chr3 52643580 52643789 -174880789 - MER61D-int LTR ERV1 -5037 180 2 2410 138 40 11 chr3 52643789 52644166 -174880412 - MER61D LTR ERV1 0 501 114 289 280 47 0 chr3 52644207 52644314 -174880264 - L2 LINE L2 -1111 2203 2092 2207 116 3 0 chr3 52644832 52645125 -174879453 + AluSq SINE Alu 1 294 -19 1423 57 68 0 chr3 52645258 52645435 -174879143 - AluY SINE Alu -122 189 1 2127 188 51 43 chr3 52645438 52645614 -174878964 + L1ME2 LINE L1 5220 5393 -771 2472 107 42 79 chr3 52645614 52646044 -174878534 + MLT2D LTR ERVL 1 414 0 2127 188 51 43 chr3 52646044 52646205 -174878373 + L1ME2 LINE L1 5393 5551 -613 2205 106 0 0 chr3 52646205 52646513 -174878065 + AluSx SINE Alu 1 308 0 2127 188 51 43 chr3 52646513 52646737 -174877841 + L1ME2 LINE L1 5551 5786 -378 2238 104 7 7 chr3 52646737 52647036 -174877542 + AluSx SINE Alu 1 299 -13 2127 188 51 43 chr3 52647036 52647092 -174877486 + L1ME2 LINE L1 5786 5840 -324 229 65 0 0 chr3 52647101 52647132 -174877446 + MER3 DNA MER1_type 16 46 -163 289 221 151 0 chr3 52647135 52647221 -174877357 + L1ME2 LINE L1 6052 6150 -14 949 223 56 17 chr3 52647381 52647614 -174876964 + L1ME LINE L1 5510 5751 -415 762 164 79 26 chr3 52648929 52649081 -174875497 - MER3 DNA MER1_type 0 209 50 1009 165 29 110 chr3 52649476 52649522 -174875056 - L1MC4a LINE L1 -445 7363 7315 2201 69 44 0 chr3 52649522 52649796 -174874782 - AluSp SINE Alu -14 299 14 1009 165 29 110 chr3 52649796 52649894 -174874684 - L1MC4a LINE L1 -493 7315 7249 2429 81 10 0 chr3 52649894 52650202 -174874376 - AluY SINE Alu 0 311 1 1009 165 29 110 chr3 52650202 52650329 -174874249 - L1MC4a LINE L1 -559 7249 7113 1716 213 101 28 chr3 52650330 52650794 -174873784 - MLT1D LTR MaLR 0 505 8 1401 193 108 34 chr3 52650803 52651049 -174873529 - L1MC4a LINE L1 -694 7114 6827 1909 163 0 0 chr3 52651049 52651344 -174873234 - AluJb SINE Alu -17 295 1 1401 193 108 34 chr3 52651344 52651485 -174873093 - L1MC4a LINE L1 -981 6827 6698 479 225 99 0 chr3 52651798 52651909 -174872669 - MER5B DNA MER1_type 0 178 57 220 239 0 60 chr3 52651915 52651982 -174872596 + MER5B DNA MER1_type 4 66 -112 2649 99 75 43 chr3 52652032 52652096 -174872482 - MSTC LTR MaLR 0 428 367 1675 188 10 3 chr3 52652096 52652389 -174872189 - AluJo SINE Alu -17 295 1 2649 99 75 43 chr3 52652389 52652739 -174871839 - MSTC LTR MaLR -61 367 1 2622 208 84 77 chr3 52652745 52653004 -174871574 - MSTC-int LTR MaLR -6 1645 1389 2013 130 0 23 chr3 52653004 52653303 -174871275 - AluSx SINE Alu -20 292 1 2622 208 84 77 chr3 52653303 52653836 -174870742 - MSTC-int LTR MaLR -262 1389 847 944 336 9 130 chr3 52654194 52654533 -174870045 - AluSq SINE Alu -5 298 1 2121 113 20 0 chr3 52654647 52654940 -174869638 + AluSg SINE Alu 1 299 -11 1450 199 54 38 chr3 52655465 52655837 -174868741 - MLT1D LTR MaLR 0 505 133 2176 108 6 16 chr3 52655932 52656247 -174868331 + AluSx SINE Alu 1 312 0 2084 177 41 17 chr3 52656248 52656666 -174867912 - L1MD3 LINE L1 -906 7089 6662 401 200 165 9 chr3 52656668 52656783 -174867795 - MER94 DNA DNA -1 133 1 2114 90 38 7 chr3 52656788 52657077 -174867501 + AluSg SINE Alu 1 298 -12 946 151 0 19 chr3 52657304 52657463 -174867115 - FAM SINE Alu -4 45 1 429 241 68 84 chr3 52657637 52657874 -174866704 + L1MC4a LINE L1 5701 5933 -1875 196 321 95 24 chr3 52658300 52658384 -174866194 + L2 LINE L2 3156 3245 -27 1666 264 119 8 chr3 52658385 52659144 -174865434 - L1ME3A LINE L1 -35 6129 5269 2131 118 0 37 chr3 52659276 52659598 -174864980 - AluSx SINE Alu -2 310 1 1065 279 94 45 chr3 52659678 52660357 -174864221 - L2 LINE L2 -11 3302 2590 2210 127 54 82 chr3 52660380 52660821 -174863757 - MSTB1 LTR MaLR 0 432 4 21 0 0 0 chr3 52660999 52661020 -174863558 + AT_rich Low_complexity Low_complexity 1 21 0 520 215 41 110 chr3 52661342 52661409 -174863169 - MIR SINE MIR -18 244 174 2146 72 41 17 chr3 52661409 52661700 -174862878 - AluY SINE Alu -13 298 1 520 215 41 110 chr3 52661700 52661851 -174862727 - MIR SINE MIR -88 174 41 2430 61 14 0 chr3 52663175 52663468 -174861110 + AluY SINE Alu 1 297 -14 279 276 45 52 chr3 52664905 52665079 -174859499 - L1ME3A LINE L1 -1596 4550 4377 2086 133 10 3 chr3 52665079 52665388 -174859190 - AluSx SINE Alu 0 312 2 279 276 45 52 chr3 52665388 52665481 -174859097 - L1ME3A LINE L1 -1769 4377 4285 768 261 128 36 chr3 52665491 52665678 -174858900 - L1ME3A LINE L1 -2196 3950 3782 1666 181 36 10 chr3 52665678 52665982 -174858596 - AluJb SINE Alu 0 312 1 768 261 128 36 chr3 52665982 52666755 -174857823 - L1ME3A LINE L1 -2364 3782 2676 461 71 14 0 chr3 52666880 52666950 -174857628 + (TA)n Simple_repeat Simple_repeat 2 72 0 3030 126 22 2 chr3 52666957 52667419 -174857159 - MER6A DNA MER2_type 0 605 135 1443 136 0 5 chr3 52667421 52667635 -174856943 - AluSg/x SINE Alu -18 292 80 382 222 78 0 chr3 52667637 52667727 -174856851 - MER6A DNA MER2_type -508 97 1 362 286 84 35 chr3 52667729 52667929 -174856649 - L1ME3A LINE L1 -3674 2472 2246 2222 73 55 0 chr3 52667929 52668218 -174856360 - AluSc SINE Alu -4 305 1 362 286 84 35 chr3 52668218 52668363 -174856215 - L1ME3A LINE L1 -3900 2246 2110 1490 204 88 37 chr3 52668417 52668908 -174855670 - L1M4 LINE L1 -1200 4946 4431 2190 105 3 3 chr3 52668961 52669256 -174855322 - AluSq SINE Alu -18 295 1 254 299 26 26 chr3 52669379 52669456 -174855122 - MIR SINE MIR -184 78 2 387 353 12 12 chr3 52669515 52669682 -174854896 - MIR3 SINE MIR -24 184 18 1691 191 7 7 chr3 52670028 52670331 -174854247 - AluJo SINE Alu 0 312 10 691 236 31 16 chr3 52670642 52670839 -174853739 + Tigger3(Golem) DNA MER2_type 1 3018 -11 2241 89 0 10 chr3 52670840 52671133 -174853445 + AluSc SINE Alu 1 290 -19 2099 96 11 4 chr3 52672031 52672311 -174852267 - AluSx SINE Alu -18 294 13 559 158 0 0 chr3 52672411 52672487 -174852091 + AluJ/FRAM SINE Alu 214 289 -23 618 198 267 6 chr3 52672507 52672679 -174851899 - MIR SINE MIR -31 231 15 1887 162 0 3 chr3 52673142 52673445 -174851133 - AluJb SINE Alu -5 307 6 1231 140 0 0 chr3 52674286 52674465 -174850113 - AluJ SINE Alu -14 298 120 560 128 0 0 chr3 52674475 52674561 -174850017 - AluY SINE Alu 0 311 226 1103 47 0 8 chr3 52674561 52674689 -174849889 - AluY SINE Alu -141 170 44 828 197 0 0 chr3 52674692 52674824 -174849754 - AluJ SINE Alu -169 133 2 1194 236 0 23 chr3 52674852 52675110 -174849468 - MER21B LTR ERV1 -69 794 543 481 68 0 0 chr3 52675683 52675742 -174848836 - AluSc SINE Alu -15 294 236 26 0 0 0 chr3 52675875 52675901 -174848677 + AT_rich Low_complexity Low_complexity 1 26 0 1993 109 0 75 chr3 52677133 52677453 -174847125 - AluSx SINE Alu -16 296 1 2026 138 14 0 chr3 52679973 52680269 -174844309 - AluSx SINE Alu -12 300 1 1084 202 6 0 chr3 52680949 52681122 -174843456 + FAM SINE Alu 1 174 -1 22 0 0 0 chr3 52681530 52681552 -174843026 + AT_rich Low_complexity Low_complexity 1 22 0 229 313 121 20 chr3 52681736 52681835 -174842743 + MIR SINE MIR 45 153 -109 217 299 162 13 chr3 52682341 52682495 -174842083 + MIR SINE MIR 86 262 0 565 165 0 0 chr3 52682757 52682842 -174841736 + FRAM/FAM SINE Alu 1 82 -94 2229 79 4 0 chr3 52682859 52683164 -174841414 - AluSg SINE Alu 0 306 1 1530 102 0 0 chr3 52683339 52683544 -174841034 - AluSq SINE Alu -6 307 103 25 0 0 0 chr3 52683657 52683682 -174840896 + AT_rich Low_complexity Low_complexity 1 25 0 411 199 112 83 chr3 52684137 52684378 -174840200 - L1MC/D LINE L1 -812 5547 5297 917 216 0 33 chr3 52684626 52684807 -174839771 + AluJo SINE Alu 1 175 -137 2156 125 0 0 chr3 52684848 52685136 -174839442 + AluSx SINE Alu 1 288 -24 360 313 45 52 chr3 52685146 52685213 -174839365 - L1MC/D LINE L1 -1314 4832 4766 189 74 0 0 chr3 52685213 52685240 -174839338 + (TAATG)n Simple_repeat Simple_repeat 4 30 0 360 313 45 52 chr3 52685240 52685305 -174839273 - L1MC/D LINE L1 -1380 4766 4702 1777 164 0 25 chr3 52685305 52685623 -174838955 - AluJo SINE Alu -2 310 1 360 313 45 52 chr3 52685623 52685757 -174838821 - L1MC/D LINE L1 -1444 4702 4567 180 294 118 24 chr3 52686291 52686376 -174838202 + MIR3 SINE MIR 82 174 -34 2381 81 3 0 chr3 52686427 52686722 -174837856 + AluSq SINE Alu 1 296 -17 189 0 0 0 chr3 52687141 52687162 -174837416 + (TTTTG)n Simple_repeat Simple_repeat 4 24 0 2125 120 3 3 chr3 52687766 52688065 -174836513 + AluSx SINE Alu 1 299 -13 1093 145 6 17 chr3 52688476 52688655 -174835923 - AluSg/x SINE Alu -7 305 129 2090 106 40 10 chr3 52688680 52688981 -174835597 - AluSx SINE Alu -2 310 1 1872 169 0 7 chr3 52689369 52689671 -174834907 - AluSx SINE Alu -9 303 4 640 279 81 74 chr3 52690168 52690598 -174833980 - MLT1K LTR MaLR -18 570 138 39850 74 7 13 chr3 52691273 52695391 -174829187 - L1PA6 LINE L1 0 6154 2076 6573 75 18 36 chr3 52695391 52697127 -174827451 - SVA Other Other -552 1381 82 39850 74 7 13 chr3 52697127 52699184 -174825394 - L1PA6 LINE L1 -4078 2076 9 487 273 59 63 chr3 52699197 52699435 -174825143 + Charlie8 DNA MER1_type 40 276 -2141 228 139 23 0 chr3 52699501 52699544 -174825034 - MLT1K LTR MaLR -37 551 508 1799 183 0 0 chr3 52699793 52700097 -174824481 - AluJb SINE Alu 0 304 1 217 298 119 0 chr3 52701280 52701364 -174823214 + L2 LINE L2 3169 3262 -10 187 338 12 0 chr3 52701975 52702055 -174822523 - L2 LINE L2 0 3313 3233 341 255 59 83 chr3 52702092 52702296 -174822282 - L2 LINE L2 0 3313 3115 1991 146 16 10 chr3 52702708 52703016 -174821562 - AluJb SINE Alu -2 310 1 2332 99 3 0 chr3 52703793 52704086 -174820492 + AluSp SINE Alu 1 294 -19 2503 59 0 0 chr3 52704114 52704400 -174820178 + AluY SINE Alu 2 287 -24 245 210 16 0 chr3 52704400 52704462 -174820116 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 309 202 32 43 chr3 52704463 52704557 -174820021 + L1MC4 LINE L1 6612 6704 -1338 790 88 62 0 chr3 52704557 52704864 -174819714 + (TA)n Simple_repeat Simple_repeat 1 326 0 2180 120 17 0 chr3 52707547 52707846 -174816732 + AluSx SINE Alu 1 304 -8 354 180 90 22 chr3 52707937 52708026 -174816552 + MIR SINE MIR 77 171 -91 1202 106 0 33 chr3 52708026 52708206 -174816372 - Charlie3 DNA MER1_type -4 2706 2533 238 236 36 0 chr3 52708454 52708509 -174816069 - L1MD3 LINE L1 -1327 6668 6612 249 234 0 0 chr3 52708510 52708574 -174816004 + (TA)n Simple_repeat Simple_repeat 2 65 0 2219 114 3 16 chr3 52709372 52709678 -174814900 + AluSx SINE Alu 1 302 -10 2389 66 0 10 chr3 52710001 52710303 -174814275 + AluY SINE Alu 3 301 -10 259 54 0 27 chr3 52710453 52710490 -174814088 - MADE1 DNA Mariner -44 36 1 4171 123 31 36 chr3 52710490 52711188 -174813390 - L1MA7 LINE L1 -198 6093 5399 2205 116 3 25 chr3 52711566 52711884 -174812694 - AluSx SINE Alu -1 311 1 486 185 139 19 chr3 52712182 52712290 -174812288 - FLAM_A SINE Alu -12 121 1 2389 74 0 3 chr3 52712302 52712598 -174811980 - AluY SINE Alu -6 305 11 393 255 194 30 chr3 52712819 52713082 -174811496 - L1MD3 LINE L1 -2247 5561 5256 24 0 0 0 chr3 52714370 52714394 -174810184 + AT_rich Low_complexity Low_complexity 1 24 0 262 365 76 14 chr3 52714635 52714846 -174809732 + MIR SINE MIR 37 260 -2 259 204 10 122 chr3 52715186 52715284 -174809294 - MER5A DNA MER1_type -77 112 26 501 173 63 31 chr3 52716478 52716605 -174807973 + MER65B LTR ERV1 1 131 -400 263 316 30 63 chr3 52716696 52716965 -174807613 + MER65A LTR ERV1 186 445 0 2216 120 7 3 chr3 52717367 52717667 -174806911 + AluSx SINE Alu 3 303 -9 1096 238 9 0 chr3 52717745 52717959 -174806619 + MER58A DNA MER1_type 9 224 0 719 188 6 44 chr3 52720034 52720215 -174804363 - Charlie2 DNA MER1_type -1 2861 2688 882 127 0 0 chr3 52720215 52720333 -174804245 + AluJb SINE Alu 1 118 -194 32 0 0 0 chr3 52720337 52720369 -174804209 + AT_rich Low_complexity Low_complexity 1 32 0 1704 203 180 42 chr3 52720377 52721115 -174803463 - Charlie2 DNA MER1_type -161 2701 1862 1587 197 0 14 chr3 52721854 52722144 -174802434 + AluJo SINE Alu 1 286 -26 273 195 253 0 chr3 52724161 52724248 -174800330 - L2 LINE L2 -5 3308 3200 1745 203 86 19 chr3 52724251 52724679 -174799899 - L1MB8 LINE L1 -341 5837 5381 1280 198 89 32 chr3 52724672 52724977 -174799601 + L1MB7 LINE L1 5786 6113 -71 * 2134 112 39 0 chr3 52724977 52725262 -174799316 + AluSx SINE Alu 1 296 -16 1280 198 89 32 chr3 52725262 52725294 -174799284 + L1MB7 LINE L1 6113 6142 -42 262 203 0 58 chr3 52725317 52725386 -174799192 + L1MEd LINE L1 103 167 -5952 1318 174 78 62 chr3 52725494 52725878 -174798700 - MLT1B LTR MaLR 0 390 1 1228 173 83 103 chr3 52725897 52726355 -174798223 - LTR7 LTR ERV1 0 450 2 2568 129 18 27 chr3 52726356 52726805 -174797773 - HERVH LTR ERV1 0 7713 7269 * 7417 108 6 6 chr3 52726791 52728806 -174795772 - HERVH LTR ERV1 -1816 5275 3065 2301 129 0 66 chr3 52728906 52729332 -174795246 - HERVH LTR ERV1 -5660 2053 1656 1835 151 22 0 chr3 52729340 52729618 -174794960 + AluJb SINE Alu 5 288 -24 838 191 12 31 chr3 52729634 52729796 -174794782 + AluJb SINE Alu 138 296 -16 192 261 54 11 chr3 52729932 52730024 -174794554 - L2 LINE L2 -54 3259 3164 242 175 0 0 chr3 52730260 52730300 -174794278 + MIR SINE MIR 112 151 -57 2150 113 0 14 chr3 52730333 52730625 -174793953 - AluSg1 SINE Alu -21 288 1 2482 72 7 0 chr3 52730940 52731244 -174793334 - AluSp SINE Alu -7 306 1 224 134 37 61 chr3 52732104 52732186 -174792392 + (CGGGG)n Simple_repeat Simple_repeat 4 83 0 30 0 0 0 chr3 52732216 52732246 -174792332 + GC_rich Low_complexity Low_complexity 1 30 0 989 95 89 6 chr3 52733002 52733160 -174791418 - MER30 DNA MER1_type -56 174 4 214 325 0 50 chr3 52733162 52733242 -174791336 - MER91B DNA MER1_type -31 159 84 298 259 164 0 chr3 52733474 52733590 -174790988 + MIR SINE MIR 15 149 -113 2487 68 7 10 chr3 52736017 52736326 -174788252 - AluY SINE Alu -3 308 1 383 327 19 19 chr3 52736997 52737156 -174787422 - MIR SINE MIR -80 182 24 191 262 0 0 chr3 52737310 52737352 -174787226 - MIR3 SINE MIR -48 160 119 2795 138 21 44 chr3 52737931 52738459 -174786119 - L1MB7 LINE L1 -45 6139 5624 883 211 11 5 chr3 52738502 52738687 -174785891 + MLT1A2 LTR MaLR 189 374 0 1426 193 102 17 chr3 52738703 52739055 -174785523 + L1ME1 LINE L1 5780 6161 -5 639 286 131 22 chr3 52739083 52739489 -174785089 + L1ME3A LINE L1 5441 5890 -280 222 371 30 1 chr3 52740087 52740199 -174784379 - MIR SINE MIR -79 129 16 188 250 250 0 chr3 52741159 52741239 -174783339 - L2 LINE L2 0 3272 3173 184 301 0 60 chr3 52741782 52741865 -174782713 + MIR3 SINE MIR 97 174 -34 552 252 69 13 chr3 52741939 52742098 -174782480 - MIR SINE MIR -92 170 3 303 224 24 47 chr3 52742124 52742209 -174782369 - MIR3 SINE MIR -27 181 99 300 256 156 25 chr3 52742617 52742777 -174781801 - MIR3 SINE MIR -27 181 1 726 283 33 47 chr3 52742807 52743107 -174781471 + L1MC4a LINE L1 5545 5840 -1968 664 197 0 36 chr3 52743127 52743264 -174781314 + FLAM_C SINE Alu 2 133 0 1975 186 72 54 chr3 52744819 52745336 -174779242 - L1MC4 LINE L1 0 8042 7517 240 282 18 80 chr3 52746008 52746171 -174778407 - MIR3 SINE MIR -51 157 5 375 364 72 11 chr3 52746453 52746717 -174777861 + L1MC/D LINE L1 4883 5162 -984 587 274 91 79 chr3 52746804 52746977 -174777601 + L1MC/D LINE L1 5264 5433 -2375 1464 168 93 36 chr3 52746977 52747119 -174777459 + AluJo SINE Alu 1 133 -179 2078 128 26 3 chr3 52747119 52747423 -174777155 + AluSx SINE Alu 1 311 -1 1464 168 93 36 chr3 52747423 52747560 -174777018 + AluJo SINE Alu 133 296 -16 587 274 91 79 chr3 52747560 52747868 -174776710 + L1MC/D LINE L1 5433 5751 -2057 1549 157 0 0 chr3 52747898 52748133 -174776445 + AluJo SINE Alu 76 310 -2 261 83 0 0 chr3 52748186 52748222 -174776356 + (GA)n Simple_repeat Simple_repeat 1 36 0 2064 135 3 0 chr3 52748390 52748736 -174775842 - AluSx SINE Alu 0 347 1 852 255 38 49 chr3 52748743 52749190 -174775388 - L1MEd LINE L1 -4862 1257 816 261 0 0 0 chr3 52749192 52749221 -174775357 + (TC)n Simple_repeat Simple_repeat 2 30 0 198 0 0 0 chr3 52749220 52749242 -174775336 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 1251 120 0 0 chr3 52749261 52749428 -174775150 - AluSp SINE Alu -13 300 134 2403 72 0 20 chr3 52749428 52749732 -174774846 - AluY SINE Alu -13 298 1 1834 177 3 19 chr3 52749737 52750053 -174774525 - AluJb SINE Alu -1 311 1 423 253 125 80 chr3 52750061 52750350 -174774228 - L1MEd LINE L1 -5289 830 529 722 162 47 7 chr3 52750512 52750660 -174773918 - MER68 LTR ERV1 -89 473 320 1592 145 71 49 chr3 52750669 52750893 -174773685 - HERVL68 LTR ERVL -869 2168 1931 1641 187 50 0 chr3 52750893 52751171 -174773407 + AluJb SINE Alu 4 295 -17 1592 145 71 49 chr3 52751171 52751312 -174773266 - HERVL68 LTR ERVL -1106 1931 1795 1332 117 99 5 chr3 52751312 52751535 -174773043 - MSTC LTR MaLR 0 428 185 454 124 88 9 chr3 52751552 52751665 -174772913 - HERVL68 LTR ERVL -1874 1163 1042 653 207 35 7 chr3 52752237 52752382 -174772196 + MER5A DNA MER1_type 2 150 -39 498 204 98 8 chr3 52752381 52752513 -174772065 + MER5B DNA MER1_type 20 163 -15 * 518 182 126 49 chr3 52752731 52752874 -174771704 - AluSg/x SINE Alu -22 288 135 228 290 43 0 chr3 52753238 52753307 -174771271 + MIR SINE MIR 102 173 -89 272 290 60 10 chr3 52753335 52753435 -174771143 - MIR SINE MIR -70 192 88 279 221 283 0 chr3 52753833 52753946 -174770632 + MIR SINE MIR 98 242 -20 2179 115 14 0 chr3 52754302 52754590 -174769988 + AluSq SINE Alu 1 292 -21 252 305 0 0 chr3 52754868 52754927 -174769651 - MIR SINE MIR -8 254 196 447 283 158 68 chr3 52754940 52755294 -174769284 - L2 LINE L2 -2 3311 2926 2125 141 26 32 chr3 52756475 52756852 -174767726 - THE1C LTR MaLR 0 375 1 204 333 64 58 chr3 52757502 52757673 -174766905 + L2 LINE L2 1759 1930 -1384 1037 221 3 35 chr3 52757983 52758124 -174766454 - L1MC4 LINE L1 -1 8041 7912 261 0 0 0 chr3 52758124 52758153 -174766425 + (CA)n Simple_repeat Simple_repeat 2 30 0 1037 221 3 35 chr3 52758153 52758296 -174766282 - L1MC4 LINE L1 -130 7912 7766 450 69 0 0 chr3 52758304 52758362 -174766216 + Alu SINE Alu 1 58 -255 2400 98 0 25 chr3 52758464 52758782 -174765796 - AluSp SINE Alu -3 310 1 1758 251 76 19 chr3 52758831 52759529 -174765049 - L1MC4 LINE L1 -371 7671 6934 356 335 0 6 chr3 52760047 52760220 -174764358 + CT-rich Low_complexity Low_complexity 2 173 0 285 323 0 0 chr3 52760244 52760436 -174764142 + CT-rich Low_complexity Low_complexity 1 192 0 2348 97 0 3 chr3 52761125 52761425 -174763153 + AluSg SINE Alu 1 299 -11 1398 165 67 76 chr3 52761456 52761771 -174762807 + AluJo SINE Alu 1 312 0 308 184 10 143 chr3 52761893 52761991 -174762587 + L1MB8 LINE L1 6083 6167 -11 403 254 179 30 chr3 52762009 52762194 -174762384 - L1ME4a LINE L1 -11 6110 5954 2453 83 3 0 chr3 52762194 52762522 -174762056 - AluSp SINE Alu 0 329 1 403 254 179 30 chr3 52762522 52762670 -174761908 - L1ME4a LINE L1 -167 5954 5726 419 259 76 23 chr3 52763088 52763103 -174761475 + MIR SINE MIR 17 30 -232 2427 70 3 16 chr3 52763103 52763416 -174761162 - AluSg1 SINE Alu 0 309 1 419 259 76 23 chr3 52763416 52763531 -174761047 + MIR SINE MIR 30 154 -108 558 261 9 0 chr3 52763570 52763681 -174760897 - MER81 DNA DNA -2 112 1 2262 131 101 49 chr3 52763719 52764112 -174760466 - Charlie1 DNA MER1_type -2 2759 2331 2473 73 0 7 chr3 52764112 52764414 -174760164 + AluSc SINE Alu 1 300 -9 2262 131 101 49 chr3 52764414 52764546 -174760032 - Charlie1 DNA MER1_type -430 2331 2207 454 217 57 0 chr3 52764538 52764644 -174759934 - Charlie1 DNA MER1_type -2616 145 34 * 253 263 0 13 chr3 52765122 52765198 -174759380 + MIR SINE MIR 60 134 -128 223 331 150 8 chr3 52765336 52765463 -174759115 - MIR3 SINE MIR -63 145 1 619 243 86 16 chr3 52765767 52766127 -174758451 - MLT1F1 LTR MaLR 0 567 63 366 201 30 119 chr3 52767036 52767069 -174757509 - MIR SINE MIR -66 196 162 1989 164 0 3 chr3 52767069 52767367 -174757211 + AluJb SINE Alu 1 297 -15 366 201 30 119 chr3 52767367 52767467 -174757111 - MIR SINE MIR -100 162 75 685 189 23 15 chr3 52768090 52768222 -174756356 - FLAM_A SINE Alu 0 133 1 186 306 14 42 chr3 52768357 52768429 -174756149 + MER5A DNA MER1_type 1 70 -119 1982 94 12 0 chr3 52768529 52768785 -174755793 + AluSc SINE Alu 50 308 -1 386 338 35 44 chr3 52769102 52769224 -174755354 + L1M4 LINE L1 4098 4219 -1927 1224 215 48 0 chr3 52769224 52769452 -174755126 - MER8 DNA MER2_type 0 239 1 386 338 35 44 chr3 52769452 52769557 -174755021 + L1M4 LINE L1 4219 4323 -1823 214 306 0 0 chr3 52769651 52769700 -174754878 - L2 LINE L2 -3 3269 3221 619 228 51 13 chr3 52770412 52770570 -174754008 - MIR SINE MIR -52 210 47 2079 154 7 0 chr3 52770842 52771141 -174753437 - AluSx SINE Alu -11 301 1 180 0 0 0 chr3 52771141 52771161 -174753417 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2188 109 0 3 chr3 52771161 52771445 -174753133 - AluSq SINE Alu -30 283 1 352 262 106 57 chr3 52772167 52772308 -174752270 - MIR3 SINE MIR -31 177 30 191 36 36 0 chr3 52772551 52772579 -174751999 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 691 280 58 5 chr3 52772629 52772836 -174751742 - MIR SINE MIR -24 238 21 1374 147 0 45 chr3 52773438 52773662 -174750916 + AluJb SINE Alu 88 301 -11 258 106 0 0 chr3 52774535 52774582 -174749996 + (T)n Simple_repeat Simple_repeat 1 47 0 5095 190 101 48 chr3 52774654 52776062 -174748516 - L1M4c LINE L1 -5139 1507 8 371 263 292 3 chr3 52777593 52777905 -174746673 - L1MC/D LINE L1 -2111 5697 5296 2203 125 0 19 chr3 52777978 52778291 -174746287 - AluSx SINE Alu -5 307 1 308 282 97 10 chr3 52778575 52778678 -174745900 - L1MC/D LINE L1 -1299 4847 4736 414 274 75 49 chr3 52778742 52779139 -174745439 - L1MC/D LINE L1 -1489 4657 4250 396 297 214 7 chr3 52779210 52779355 -174745223 - MER5A DNA MER1_type -6 183 9 348 300 30 95 chr3 52779494 52779694 -174744884 - MIR3 SINE MIR -7 201 15 185 309 135 24 chr3 52780674 52780800 -174743778 - L3b LINE CR1 -241 1342 1203 303 218 90 13 chr3 52781071 52781149 -174743429 + L2 LINE L2 3184 3267 -5 201 39 0 0 chr3 52782986 52783012 -174741566 + (TG)n Simple_repeat Simple_repeat 2 27 0 1270 184 40 126 chr3 52785827 52786553 -174738025 + L1MC4a LINE L1 7192 7805 -3 430 195 201 52 chr3 52786554 52786728 -174737850 + L1ME4a LINE L1 5657 5856 -265 306 281 53 0 chr3 52786735 52786849 -174737729 + L1ME4a LINE L1 6002 6121 0 259 273 20 61 chr3 52787228 52787327 -174737251 - MIR SINE MIR -72 136 42 256 303 82 0 chr3 52788102 52788224 -174736354 + MER112 DNA MER1_type 8 139 -121 489 289 93 61 chr3 52788302 52788548 -174736030 - MIR SINE MIR -4 258 5 877 121 55 71 chr3 52789373 52789555 -174735023 - MER5A DNA MER1_type -4 185 7 2475 53 0 3 chr3 52789781 52790064 -174734514 - AluY SINE Alu -14 297 16 1827 184 0 3 chr3 52790223 52790516 -174734062 + AluJo SINE Alu 1 292 -20 314 256 77 32 chr3 52795198 52795354 -174729224 - L1ME4a LINE L1 0 6121 5959 253 305 114 71 chr3 52796304 52796514 -174728064 - MIR SINE MIR -39 223 5 1586 117 6 34 chr3 52797003 52797312 -174727266 - MER4A LTR ERV1 -43 621 263 323 69 375 14 chr3 52797312 52797384 -174727194 - MER4A LTR ERV1 -566 98 1 288 216 159 85 chr3 52797463 52797508 -174727070 - MLT2B1 LTR ERVL 0 520 480 258 32 0 0 chr3 52797508 52797539 -174727039 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 339 44 0 0 chr3 52797538 52797583 -174726995 + (GA)n Simple_repeat Simple_repeat 2 46 0 288 216 159 85 chr3 52797539 52797608 -174726970 - MLT2B1 LTR ERVL -40 480 418 2420 97 0 0 chr3 52797608 52797907 -174726671 + AluSg SINE Alu 1 299 -11 288 216 159 85 chr3 52797907 52798080 -174726498 - MLT2B1 LTR ERVL -102 418 186 254 158 105 0 chr3 52799092 52799149 -174725429 + L2 LINE L2 3189 3251 -21 356 282 45 0 chr3 52800075 52800185 -174724393 + L2 LINE L2 3159 3273 -40 361 292 76 14 chr3 52800811 52800955 -174723623 + MIR SINE MIR 39 191 -71 207 199 0 221 chr3 52802146 52802187 -174722391 + MIR SINE MIR 42 90 -118 1972 134 0 38 chr3 52802187 52802500 -174722078 + AluJb SINE Alu 1 301 -11 207 199 0 221 chr3 52802500 52802594 -174721984 + MIR SINE MIR 90 147 -61 283 108 10 69 chr3 52802892 52802994 -174721584 + (CACCC)n Simple_repeat Simple_repeat 5 100 0 220 175 41 31 chr3 52803006 52803103 -174721475 + (CACAC)n Simple_repeat Simple_repeat 1 98 0 2215 124 20 0 chr3 52804934 52805233 -174719345 + AluSq SINE Alu 3 307 -6 791 110 103 0 chr3 52805432 52805568 -174719010 + LTR56 LTR ERV1 190 339 -106 3596 109 21 12 chr3 52805568 52806683 -174717895 + L1PA14 LINE L1 4887 6155 -6 343 161 149 0 chr3 52806708 52806795 -174717783 + LTR23 LTR ERV1 333 432 -5 1539 146 4 20 chr3 52806969 52807216 -174717362 + AluJb SINE Alu 1 243 -69 848 129 0 0 chr3 52807231 52807355 -174717223 + FLAM_C SINE Alu 2 125 -8 216 0 0 0 chr3 52807356 52807380 -174717198 + (T)n Simple_repeat Simple_repeat 1 24 0 2090 119 7 14 chr3 52807797 52808092 -174716486 - AluSx SINE Alu -19 293 1 197 0 71 0 chr3 52808329 52808357 -174716221 + (TAAAAA)n Simple_repeat Simple_repeat 1 30 0 1522 161 44 32 chr3 52808924 52809240 -174715338 + THE1C LTR MaLR 54 373 -2 1111 215 30 4 chr3 52809242 52809475 -174715103 - Tigger3(Golem) DNA MER2_type -2788 241 3 1160 245 195 7 chr3 52809499 52809920 -174714658 - L1MC4 LINE L1 -305 7737 7238 1641 236 145 17 chr3 52809930 52810469 -174714109 - L1MC4 LINE L1 -963 7079 6472 448 279 16 0 chr3 52810898 52811027 -174713551 + MIR SINE MIR 67 197 -65 203 300 50 0 chr3 52811887 52811967 -174712611 + MIR SINE MIR 124 207 -55 373 348 111 11 chr3 52812465 52812735 -174711843 + L1MC4a LINE L1 5808 6104 -1704 346 297 55 14 chr3 52813306 52813327 -174711251 - MER5B DNA MER1_type -23 155 136 2205 131 0 13 chr3 52813327 52813640 -174710938 + AluSx SINE Alu 1 309 -3 346 297 55 14 chr3 52813640 52813763 -174710815 - MER5B DNA MER1_type -42 136 5 194 255 85 64 chr3 52814041 52814135 -174710443 - MIR3 SINE MIR -3 205 110 221 321 150 0 chr3 52814466 52814606 -174709972 - MER91A DNA MER1_type -34 162 2 352 264 46 56 chr3 52815143 52815359 -174709219 + MIR SINE MIR 14 227 -35 358 299 51 7 chr3 52815433 52815570 -174709008 - MIR SINE MIR -35 227 85 560 159 159 0 chr3 52815850 52815963 -174708615 + FRAM SINE Alu 33 163 -13 1856 144 0 52 chr3 52815963 52816131 -174708447 - AluJo SINE Alu -22 290 144 2445 69 14 0 chr3 52816131 52816422 -174708156 - AluSp SINE Alu -18 295 1 1856 144 0 52 chr3 52816422 52816559 -174708019 - AluJo SINE Alu -168 144 1 2251 102 3 19 chr3 52817515 52817830 -174706748 - AluSg SINE Alu 0 310 1 381 360 57 42 chr3 52818377 52818760 -174705818 - L2 LINE L2 -12 3260 2872 1684 168 4 0 chr3 52818942 52819204 -174705374 + AluJb SINE Alu 50 312 0 207 0 0 0 chr3 52819445 52819468 -174705110 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 612 206 0 0 chr3 52819573 52819680 -174704898 - FLAM_A SINE Alu -30 112 6 189 74 0 0 chr3 52819698 52819725 -174704853 + (TATATG)n Simple_repeat Simple_repeat 2 28 0 273 293 21 50 chr3 52821262 52821402 -174703176 - MER5B DNA MER1_type 0 178 43 292 293 33 47 chr3 52821437 52821587 -174702991 - MIR SINE MIR -7 255 108 2212 64 11 0 chr3 52821802 52822141 -174702437 - AluY SINE Alu 0 342 1 875 132 40 17 chr3 52822391 52822565 -174702013 - MER96B DNA MER1_type? -239 178 1 764 274 29 14 chr3 52822586 52822863 -174701715 + Charlie2 DNA MER1_type 46 326 -2536 1056 242 123 40 chr3 52822881 52823015 -174701563 + Charlie2 DNA MER1_type 1885 2006 -856 1176 69 0 0 chr3 52823015 52823174 -174701404 - L1PA8 LINE L1 -5 6167 6009 1056 242 123 40 chr3 52823174 52823468 -174701110 + Charlie2 DNA MER1_type 2006 2349 -513 401 200 136 50 chr3 52823825 52823965 -174700613 + MIR3 SINE MIR 43 194 -14 500 364 52 24 chr3 52824112 52824494 -174700084 + L2 LINE L2 2259 2651 -663 213 314 162 2 chr3 52824803 52824959 -174699619 - MIR SINE MIR -63 145 16 205 264 8 112 chr3 52826056 52826181 -174698397 - MIR SINE MIR -111 151 40 224 319 78 26 chr3 52826495 52826611 -174697967 - MIR SINE MIR 0 262 141 419 305 165 48 chr3 52826833 52827275 -174697303 + L2 LINE L2 2818 3311 -2 432 267 84 32 chr3 52827429 52827645 -174696933 - MLT1J LTR MaLR -197 314 100 278 256 128 0 chr3 52827734 52827812 -174696766 + MIR3 SINE MIR 109 196 -12 1486 251 64 12 chr3 52828418 52828824 -174695754 - LTR16A LTR ERVL -5 445 19 458 139 0 0 chr3 52829128 52829200 -174695378 - U5 snRNA snRNA -44 72 1 * 613 218 57 65 chr3 52829197 52829426 -174695152 - MER115 DNA AcHobo -62 631 405 471 270 113 5 chr3 52829445 52829630 -174694948 - MER115 DNA AcHobo -425 268 64 372 208 144 0 chr3 52829638 52829763 -174694815 - LTR16A LTR ERVL -7 443 301 21 36 0 0 chr3 52830531 52830559 -174694019 + GC_rich Low_complexity Low_complexity 1 28 0 197 254 84 56 chr3 52833284 52833355 -174691223 + MIR SINE MIR 161 233 -29 1337 113 26 22 chr3 52833515 52833744 -174690834 + MER30 DNA MER1_type 1 230 0 374 219 91 64 chr3 52834568 52834755 -174689823 - MIR SINE MIR -69 193 2 361 229 65 15 chr3 52835083 52835202 -174689376 + MIR SINE MIR 17 135 -73 2767 206 34 35 chr3 52835391 52835904 -174688674 - L1ME2 LINE L1 -39 6125 5612 1542 187 129 45 chr3 52835904 52836322 -174688256 + MSTB2 LTR MaLR 3 455 -2 2767 206 34 35 chr3 52836322 52836522 -174688056 - L1ME2 LINE L1 -552 5612 5413 221 301 164 14 chr3 52836945 52837091 -174687487 - MIR SINE MIR -47 215 48 2300 101 20 0 chr3 52837161 52837457 -174687121 + AluSp SINE Alu 1 302 -11 202 184 20 20 chr3 52838055 52838104 -174686474 + (TAGA)n Simple_repeat Simple_repeat 4 52 0 576 253 62 0 chr3 52839665 52839827 -174684751 - MLT2B1 LTR ERVL -348 172 1 414 286 77 16 chr3 52839843 52840025 -174684553 - LTR37B LTR ERV1 -270 198 6 2525 72 23 0 chr3 52840537 52840842 -174683736 + AluSx SINE Alu 1 312 0 360 34 34 17 chr3 52841021 52841080 -174683498 + (GAAA)n Simple_repeat Simple_repeat 3 62 0 321 26 0 0 chr3 52842134 52842173 -174682405 + MER4C LTR ERV1 1 39 -426 3772 118 7 18 chr3 52842173 52842593 -174681985 + MER41A LTR ERV1 1 415 -139 2014 109 0 0 chr3 52842593 52842868 -174681710 - AluSx SINE Alu -37 275 1 3772 118 7 18 chr3 52842868 52843007 -174681571 + MER41A LTR ERV1 415 554 0 2149 109 23 57 chr3 52843007 52843236 -174681342 + MER41B LTR ERV1 299 513 -122 2128 94 27 0 chr3 52843236 52843534 -174681044 - AluSx SINE Alu -6 306 1 2149 109 23 57 chr3 52843534 52843653 -174680925 + MER41B LTR ERV1 513 635 0 2642 111 72 10 chr3 52843653 52844058 -174680520 + MER4C LTR ERV1 36 465 0 2158 99 3 0 chr3 52844088 52844390 -174680188 - AluSp SINE Alu -4 309 7 1768 184 0 3 chr3 52844548 52844858 -174679720 - AluJb SINE Alu -3 309 1 1096 190 27 43 chr3 52844871 52845171 -174679407 - AluSg SINE Alu -2 298 4 1012 100 0 0 chr3 52845360 52845490 -174679088 - AluSg1 SINE Alu -178 131 2 227 216 57 23 chr3 52845519 52845607 -174678971 - L1MC4a LINE L1 -1630 6178 6088 4098 120 31 2 chr3 52845859 52846476 -174678102 - MER41B LTR ERV1 0 635 1 423 277 35 43 chr3 52846931 52847072 -174677506 - MIR SINE MIR -48 214 75 1806 171 50 34 chr3 52847164 52847545 -174677033 - LTR48 LTR ERV1 -4 783 397 602 186 0 0 chr3 52847546 52847643 -174676935 + MER2 DNA MER2_type 2 98 -247 466 138 0 0 chr3 52847643 52847708 -174676870 - MER2 DNA MER2_type 0 345 281 254 283 17 0 chr3 52847734 52847794 -174676784 + MER2 DNA MER2_type 285 345 0 1462 176 184 9 chr3 52847795 52848131 -174676447 - LTR48 LTR ERV1 -392 395 1 700 188 119 23 chr3 52848683 52848901 -174675677 - LTR37B LTR ERV1 0 468 230 1184 158 0 0 chr3 52849649 52849839 -174674739 + L1PB1 LINE L1 5954 6143 -8 525 305 135 45 chr3 52850037 52850594 -174673984 + L2 LINE L2 2151 2757 -557 892 216 51 42 chr3 52851085 52851321 -174673257 - MIR SINE MIR 0 262 25 1742 140 121 13 chr3 52852349 52852663 -174671915 + MER7A DNA MER2_type 1 346 0 276 30 0 0 chr3 52853530 52853563 -174671015 + (TA)n Simple_repeat Simple_repeat 1 33 0 205 326 45 8 chr3 52854282 52854414 -174670164 + L2 LINE L2 2189 2325 -989 514 227 53 23 chr3 52854593 52854725 -174669853 + MER5B DNA MER1_type 40 175 -3 1035 320 76 24 chr3 52854730 52855448 -174669130 + L2 LINE L2 2528 3296 -17 21 0 0 0 chr3 52857605 52857626 -174666952 + AT_rich Low_complexity Low_complexity 1 21 0 650 205 113 7 chr3 52858038 52858189 -174666389 + MER58B DNA MER1_type 175 341 0 441 0 0 0 chr3 52858710 52858759 -174665819 + (GGAA)n Simple_repeat Simple_repeat 2 50 0 274 200 36 0 chr3 52859201 52859256 -174665322 + L2 LINE L2 3216 3272 0 180 258 0 45 chr3 52860091 52860157 -174664421 - L2 LINE L2 0 3272 3210 200 295 33 0 chr3 52861126 52861187 -174663391 - MIR SINE MIR -102 160 98 773 183 0 0 chr3 52863628 52863748 -174660830 + FLAM_C SINE Alu 3 122 -21 235 277 21 106 chr3 52863955 52864049 -174660529 - MIR3 SINE MIR -7 201 116 524 324 89 13 chr3 52864120 52864345 -174660233 - MIR SINE MIR -7 255 14 360 289 70 8 chr3 52864398 52864526 -174660052 + MIR3 SINE MIR 41 176 -32 1597 170 11 4 chr3 52864642 52864918 -174659660 + AluJo SINE Alu 3 280 -32 666 275 16 16 chr3 52865470 52865659 -174658919 + MIR3 SINE MIR 12 200 -8 257 227 61 30 chr3 52866035 52866101 -174658477 - MIR SINE MIR -76 132 65 501 198 69 0 chr3 52866998 52867114 -174657464 - FLAM_A SINE Alu 0 142 19 1962 132 0 0 chr3 52867292 52867581 -174656997 + AluSx SINE Alu 1 289 -23 1034 216 15 83 chr3 52868372 52868575 -174656003 + MIR SINE MIR 4 186 -76 2189 91 7 0 chr3 52868575 52868871 -174655707 - AluSp SINE Alu -15 298 1 1034 216 15 83 chr3 52868871 52868931 -174655647 + MIR SINE MIR 186 249 -13 234 0 0 0 chr3 52870861 52870887 -174653691 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 297 0 0 0 chr3 52870886 52870919 -174653659 + (CA)n Simple_repeat Simple_repeat 1 33 0 812 30 60 0 chr3 52871926 52872026 -174652552 + AluSc SINE Alu 19 124 -185 1983 121 34 0 chr3 52872268 52872566 -174652012 - AluSx SINE Alu -4 308 1 281 211 167 0 chr3 52872573 52872663 -174651915 - MIR SINE MIR -121 141 37 214 225 0 0 chr3 52872719 52872759 -174651819 - L2 LINE L2 -22 3291 3252 335 262 49 85 chr3 52873011 52873155 -174651423 + MIR SINE MIR 32 169 -60 773 220 23 12 chr3 52873761 52873934 -174650644 + MER5B DNA MER1_type 1 175 -3 827 255 106 88 chr3 52874190 52874239 -174650339 - MLT1J LTR MaLR -2 509 462 767 195 0 8 chr3 52874239 52874367 -174650211 + FLAM_A SINE Alu 1 127 -6 827 255 106 88 chr3 52874367 52874627 -174649951 - MLT1J LTR MaLR -49 462 185 2294 86 3 0 chr3 52874627 52874929 -174649649 - AluSp SINE Alu -10 303 1 827 255 106 88 chr3 52874929 52875116 -174649462 - MLT1J LTR MaLR -326 185 3 2152 111 0 0 chr3 52875607 52875904 -174648674 + AluSx SINE Alu 1 297 -15 4896 194 51 12 chr3 52875918 52876044 -174648534 + Tigger6a DNA MER2_type 1 121 -1476 180 0 0 0 chr3 52876044 52876064 -174648514 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 2076 118 0 0 chr3 52876067 52876355 -174648223 - AluSx SINE Alu -24 288 1 4896 194 51 12 chr3 52876355 52877265 -174647313 + Tigger6a DNA MER2_type 122 1081 -2 270 282 13 0 chr3 52877267 52877345 -174647233 - LTR33 LTR ERVL -76 445 367 365 284 58 19 chr3 52877421 52877629 -174646949 - LTR33 LTR ERVL -267 254 39 2054 119 20 0 chr3 52877662 52877964 -174646614 - AluSx SINE Alu -4 308 1 276 77 0 0 chr3 52878616 52878655 -174645923 + (TG)n Simple_repeat Simple_repeat 2 40 0 1211 149 29 5 chr3 52878958 52879166 -174645412 - MER20 DNA MER1_type 0 219 7 425 222 0 20 chr3 52879436 52879535 -174645043 + LTR16B LTR ERVL 360 456 -8 1322 256 77 40 chr3 52879582 52880012 -174644566 + LTR16B LTR ERVL 6 451 -13 21 36 0 0 chr3 52880052 52880080 -174644498 + AT_rich Low_complexity Low_complexity 1 28 0 1968 231 80 19 chr3 52880584 52881124 -174643454 + MER90 LTR ERV1 3 575 0 187 317 208 20 chr3 52881285 52881386 -174643192 + MIR SINE MIR 56 175 -87 2500 134 28 24 chr3 52881633 52882057 -174642521 + MSTB LTR MaLR 1 426 0 216 150 50 0 chr3 52883326 52883366 -174641212 + CT-rich Low_complexity Low_complexity 1 42 0 2187 98 3 3 chr3 52883572 52883879 -174640699 + AluSc SINE Alu 1 307 -2 5716 57 10 0 chr3 52885024 52885708 -174638870 - LTR8 LTR ERV1 0 691 1 304 215 0 15 chr3 52885882 52885947 -174638631 + L2 LINE L2 3209 3272 0 366 211 0 96 chr3 52886501 52886605 -174637973 + MIR3 SINE MIR 114 207 -1 3331 125 38 27 chr3 52886699 52887258 -174637320 - MER34B LTR ERV1 0 565 1 552 181 0 166 chr3 52887470 52887533 -174637045 - L1ME1 LINE L1 -4 6162 6090 1877 142 0 7 chr3 52887533 52887836 -174636742 - AluJb SINE Alu -11 301 1 552 181 0 166 chr3 52887836 52887971 -174636607 - L1ME1 LINE L1 -76 6090 5997 254 203 85 0 chr3 52888030 52888089 -174636489 - L2 LINE L2 -61 3252 3189 1790 150 24 0 chr3 52888529 52888823 -174635755 + AluJb SINE Alu 3 303 -9 267 214 291 34 chr3 52889049 52889166 -174635412 + L2 LINE L2 3165 3311 -2 255 31 0 0 chr3 52889446 52889478 -174635100 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1172 307 113 13 chr3 52889623 52890154 -174634424 - L2 LINE L2 -883 2431 1848 251 182 0 0 chr3 52890485 52890540 -174634038 - L1ME1 LINE L1 -219 5951 5897 353 242 24 48 chr3 52890540 52890664 -174633914 + L1MC5 LINE L1 7790 7910 -51 1633 144 40 13 chr3 52890725 52891023 -174633555 - AluJo SINE Alu -6 306 1 657 222 26 37 chr3 52891149 52891338 -174633240 + L2 LINE L2 3092 3278 -35 371 227 214 63 chr3 52891339 52891577 -174633001 - MLT1J LTR MaLR -15 496 223 331 191 191 17 chr3 52892001 52892116 -174632462 + MER5A DNA MER1_type 49 183 -6 1869 123 10 30 chr3 52892600 52892901 -174631677 - AluSx SINE Alu -17 295 1 1593 157 14 20 chr3 52893413 52893707 -174630871 - AluJb SINE Alu -18 294 3 361 241 212 55 chr3 52893753 52893989 -174630589 + MLT1J LTR MaLR 224 496 -15 2985 255 71 49 chr3 52893990 52895336 -174629242 - L2 LINE L2 -35 3278 1912 237 307 0 0 chr3 52895320 52895395 -174629183 + MIR SINE MIR 176 250 -12 * 773 179 0 15 chr3 52895432 52895566 -174629012 + MER3 DNA MER1_type 2 133 -76 309 158 0 92 chr3 52895804 52895880 -174628698 + MER3 DNA MER1_type 135 203 -6 259 268 107 37 chr3 52896079 52896198 -174628380 + MIR SINE MIR 13 139 -69 828 192 47 17 chr3 52896198 52896370 -174628208 - MER45A DNA AcHobo -1 177 1 2478 104 8 8 chr3 52896641 52896996 -174627582 + THE1A LTR MaLR 1 355 0 12370 79 2 4 chr3 52896996 52898578 -174626000 + THE1A-int LTR MaLR 1 1580 0 2439 118 6 8 chr3 52898578 52898934 -174625644 + THE1A LTR MaLR 1 355 0 1878 121 31 3 chr3 52899008 52899297 -174625281 + AluSx SINE Alu 1 297 -15 185 344 0 0 chr3 52899754 52899815 -174624763 - L2 LINE L2 -830 2484 2424 * 194 261 43 0 chr3 52899811 52899857 -174624721 - L3 LINE CR1 -4 1573 1526 288 297 144 20 chr3 52900030 52900232 -174624346 + MIR SINE MIR 6 232 -30 1849 146 19 22 chr3 52901064 52901386 -174623192 + MSTB1 LTR MaLR 112 432 0 379 254 8 59 chr3 52901607 52901725 -174622853 + MLT1G1 LTR MaLR 19 130 -460 763 153 23 8 chr3 52901728 52901859 -174622719 + FLAM_A SINE Alu 1 133 0 744 267 260 7 chr3 52901941 52902222 -174622356 + MLT1G1 LTR MaLR 231 582 -13 189 0 0 0 chr3 52902464 52902485 -174622093 + (CAGAA)n Simple_repeat Simple_repeat 2 22 0 2074 127 3 13 chr3 52903911 52904226 -174620352 + AluJb SINE Alu 1 312 0 505 246 7 22 chr3 52904370 52904508 -174620070 - Charlie8 DNA MER1_type -2137 280 145 813 168 135 5 chr3 52904607 52904792 -174619786 + MLT1D LTR MaLR 1 209 -296 1122 175 65 14 chr3 52904819 52905036 -174619542 + MLT1D LTR MaLR 278 505 0 201 316 76 38 chr3 52907434 52907513 -174617065 + L2 LINE L2 3186 3267 -5 1399 152 63 19 chr3 52907996 52908288 -174616290 + AluSx SINE Alu 4 307 0 790 277 168 36 chr3 52909088 52909528 -174615050 + MLT1H1 LTR MaLR 58 555 0 210 263 50 25 chr3 52910114 52910194 -174614384 + L2 LINE L2 2723 2804 -510 248 288 91 45 chr3 52910277 52910409 -174614169 - MIR SINE MIR -60 202 65 1046 228 76 91 chr3 52910442 52910850 -174613728 + MLT1H LTR MaLR 148 549 0 852 173 18 102 chr3 52911424 52911589 -174612989 + MER3 DNA MER1_type 1 144 -65 1962 112 0 27 chr3 52911589 52911884 -174612694 - AluSx SINE Alu -25 287 1 852 173 18 102 chr3 52911884 52911944 -174612634 + MER3 DNA MER1_type 144 207 -2 255 331 85 23 chr3 52912174 52912304 -174612274 - L3b LINE CR1 -12 1571 1434 295 340 19 0 chr3 52913848 52913951 -174610627 + MIR SINE MIR 43 147 -61 255 263 66 88 chr3 52914006 52914021 -174610557 - L2 LINE L2 -1 3312 3298 1826 94 0 106 chr3 52914021 52914350 -174610228 - AluSx SINE Alu -18 294 1 255 263 66 88 chr3 52914350 52914471 -174610107 - L2 LINE L2 -15 3298 3179 211 176 39 20 chr3 52914478 52914529 -174610049 + G-rich Low_complexity Low_complexity 6 57 0 2079 103 24 0 chr3 52914732 52915023 -174609555 - AluSx SINE Alu -14 298 1 441 284 35 35 chr3 52915717 52915918 -174608660 + L1MC4a LINE L1 5343 5543 -2265 268 250 186 16 chr3 52916019 52916132 -174608446 + L1MC4a LINE L1 5696 5788 -2020 2230 105 3 0 chr3 52916132 52916437 -174608141 + AluSx SINE Alu 1 306 -6 268 250 186 16 chr3 52916437 52916511 -174608067 + L1MC4a LINE L1 5788 5915 -1893 2066 127 3 0 chr3 52916816 52917124 -174607454 + AluSx SINE Alu 2 310 -2 21 0 0 0 chr3 52917294 52917315 -174607263 + AT_rich Low_complexity Low_complexity 1 21 0 211 295 74 0 chr3 52917754 52917849 -174606729 + L2 LINE L2 2982 3083 -189 207 0 0 0 chr3 52917977 52918000 -174606578 + (TTA)n Simple_repeat Simple_repeat 2 24 0 760 176 0 0 chr3 52918004 52918123 -174606455 - AluJb SINE Alu -30 282 164 5885 221 90 60 chr3 52918264 52920454 -174604124 - HAL1 LINE L1 -168 2339 84 1042 261 57 13 chr3 52920690 52920989 -174603589 - MLT1I LTR MaLR 0 409 98 2210 100 3 0 chr3 52921393 52921692 -174602886 + AluSq SINE Alu 2 301 -12 229 329 12 24 chr3 52922827 52922912 -174601666 + L2 LINE L2 3188 3271 -1 859 137 0 0 chr3 52923028 52923152 -174601426 + FLAM_C SINE Alu 1 124 -19 24 0 0 0 chr3 52923152 52923176 -174601402 + AT_rich Low_complexity Low_complexity 1 24 0 290 316 13 0 chr3 52923446 52923522 -174601056 - L2 LINE L2 -211 3061 2985 186 237 172 65 chr3 52923693 52923786 -174600792 + L2 LINE L2 3168 3270 -2 637 281 78 9 chr3 52924752 52924983 -174599595 - LTR33 LTR ERVL -48 473 227 264 195 122 24 chr3 52925028 52925110 -174599468 - LTR33 LTR ERVL -372 149 60 507 269 94 6 chr3 52925251 52925411 -174599167 - MIR SINE MIR -66 196 23 320 261 113 17 chr3 52925880 52925995 -174598583 - MER5A DNA MER1_type 0 189 64 239 292 178 27 chr3 52926125 52926310 -174598268 + MIR SINE MIR 29 241 -21 1351 167 123 0 chr3 52926486 52926762 -174597816 + AluJo SINE Alu 1 310 -2 209 344 0 16 chr3 52927553 52927614 -174596964 - MIR3 SINE MIR -135 73 14 197 156 44 22 chr3 52928105 52928150 -174596428 + MIR SINE MIR 157 202 -60 257 300 150 25 chr3 52928190 52928350 -174596228 - MIR SINE MIR -29 233 54 1858 143 30 17 chr3 52929039 52929339 -174595239 + AluJo SINE Alu 1 304 -8 739 268 138 4 chr3 52929445 52929676 -174594902 + MIR SINE MIR 1 262 0 465 259 65 14 chr3 52929707 52929846 -174594732 - MIR3 SINE MIR -11 197 52 2409 73 3 6 chr3 52930172 52930487 -174594091 - pTR5 LTR ERV1 -2046 392 79 425 199 51 62 chr3 52930487 52930624 -174593954 - LTR30 LTR ERV1 -80 642 375 3562 129 142 59 chr3 52930624 52931514 -174593064 - pTR5 LTR ERV1 -439 1999 741 1056 226 79 36 chr3 52931877 52932270 -174592308 + L1MC4a LINE L1 5815 6224 -1584 820 139 66 0 chr3 52932270 52932421 -174592157 + AluSg/x SINE Alu 130 290 -22 3315 174 56 68 chr3 52932427 52933251 -174591327 + L1MC4a LINE L1 6214 7027 -781 936 204 34 0 chr3 52933289 52933465 -174591113 - MER58A DNA MER1_type -1 223 42 499 307 7 7 chr3 52933698 52933835 -174590743 + MIR SINE MIR 11 147 -115 246 220 0 0 chr3 52934600 52934650 -174589928 - L2 LINE L2 0 3272 3223 582 304 85 14 chr3 52934956 52935201 -174589377 + MIR SINE MIR 3 256 -6 448 184 160 4 chr3 52935388 52935489 -174589089 - MER68 LTR ERV1 0 562 461 1244 233 84 0 chr3 52935512 52935787 -174588791 - MER68 LTR ERV1 -264 298 1 195 250 62 0 chr3 52935877 52935941 -174588637 - MIR SINE MIR -128 134 67 219 69 0 0 chr3 52937119 52937148 -174587430 + (TGG)n Simple_repeat Simple_repeat 1 29 0 882 257 49 13 chr3 52938878 52939107 -174585471 + MIR SINE MIR 15 248 -14 197 206 48 63 chr3 52939316 52939379 -174585199 - L2 LINE L2 -498 2816 2755 * 200 147 29 0 chr3 52939373 52939407 -174585171 + MIR3 SINE MIR 157 191 -17 450 0 0 0 chr3 52939711 52939761 -174584817 + (TG)n Simple_repeat Simple_repeat 2 51 0 2121 109 7 0 chr3 52939833 52940137 -174584441 - AluSp SINE Alu -7 306 1 220 302 129 0 chr3 52940704 52940820 -174583758 + L2 LINE L2 2891 3021 -251 27 0 0 0 chr3 52942248 52942275 -174582303 + AT_rich Low_complexity Low_complexity 1 27 0 493 305 31 6 chr3 52942467 52942631 -174581947 - MIR SINE MIR -51 211 45 2150 125 0 0 chr3 52942876 52943188 -174581390 - AluSx SINE Alu 0 312 1 2053 119 3 0 chr3 52944259 52944554 -174580024 + AluSx SINE Alu 1 296 -16 383 303 23 23 chr3 52945102 52945234 -174579344 - L2 LINE L2 -5 3267 3136 1955 116 35 0 chr3 52945850 52946134 -174578444 + AluSx SINE Alu 1 294 -18 469 236 38 9 chr3 52946614 52946720 -174577858 + L2 LINE L2 3198 3306 -7 351 228 7 121 chr3 52947013 52947162 -174577416 + L1ME LINE L1 5634 5765 -356 1842 226 103 71 chr3 52948393 52948965 -174575613 - L1ME3A LINE L1 -101 6069 5517 2207 99 0 0 chr3 52948965 52949257 -174575321 - AluSx SINE Alu -19 293 2 1842 226 103 71 chr3 52949257 52949829 -174574749 - L1ME3A LINE L1 -653 5517 4866 2318 87 7 3 chr3 52950772 52951081 -174573497 - AluSx SINE Alu -2 310 1 2627 32 6 0 chr3 52951105 52951417 -174573161 - AluYb8 SINE Alu -4 314 1 1331 160 27 77 chr3 52951417 52951717 -174572861 - AluJo SINE Alu -13 289 5 231 171 129 0 chr3 52952850 52952920 -174571658 + L2 LINE L2 3133 3211 -61 406 278 6 77 chr3 52953230 52953399 -174571179 + MIR SINE MIR 106 262 0 1107 234 32 8 chr3 52953574 52953822 -174570756 - MIR SINE MIR -3 259 6 2019 107 10 7 chr3 52954258 52954548 -174570030 - AluSg SINE Alu -19 291 1 21 0 0 0 chr3 52954928 52954949 -174569629 + AT_rich Low_complexity Low_complexity 1 21 0 1756 161 3 7 chr3 52954959 52955251 -174569327 - AluJo SINE Alu -21 291 1 217 0 61 0 chr3 52955261 52955294 -174569284 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1545 154 75 0 chr3 52957957 52958236 -174566342 - AluJo SINE Alu -6 306 7 1936 126 3 0 chr3 52958253 52958547 -174566031 - AluSc SINE Alu -14 295 1 487 212 31 124 chr3 52958599 52958685 -174565893 + L1ME LINE L1 5526 5618 -503 2145 78 21 0 chr3 52958685 52958966 -174565612 + AluSc SINE Alu 1 287 -22 487 212 31 124 chr3 52958966 52959105 -174565473 + L1ME LINE L1 5618 5730 -391 437 319 61 31 chr3 52959221 52959664 -174564914 + HERV16 LTR ERVL 1588 2069 -2927 801 336 69 19 chr3 52959728 52960103 -174564475 + HERV16 LTR ERVL 2228 2621 -3143 1959 290 85 45 chr3 52960198 52961439 -174563139 + HERV16 LTR ERVL 2748 4033 -1621 243 244 179 48 chr3 52962137 52962305 -174562273 - MIR SINE MIR -70 192 3 913 205 0 0 chr3 52962451 52962617 -174561961 - FRAM SINE Alu 0 166 1 505 325 123 35 chr3 52963293 52963902 -174560676 + L3 LINE CR1 901 1563 -14 1430 173 3 51 chr3 52963925 52964238 -174560340 - AluJo SINE Alu -14 298 1 1055 150 48 89 chr3 52964461 52964502 -174560076 - L1MB3 LINE L1 -3 6180 6139 2153 70 18 0 chr3 52964502 52964786 -174559792 + AluY SINE Alu 1 289 -22 1055 150 48 89 chr3 52964786 52965020 -174559558 - L1MB3 LINE L1 -44 6139 5926 1356 110 97 0 chr3 52965020 52965248 -174559330 - L1PA13 LINE L1 -1 6162 5913 1055 150 48 89 chr3 52965248 52965267 -174559311 - L1MB3 LINE L1 -257 5926 5908 264 167 37 0 chr3 52966601 52966655 -174557923 - L1MC4 LINE L1 -1 8041 7986 393 269 69 15 chr3 52966665 52966795 -174557783 - L1MC4 LINE L1 -149 7893 7757 5834 122 44 16 chr3 52966796 52967063 -174557515 - Tigger3b DNA MER2_type -1799 1229 971 2111 130 11 40 chr3 52967063 52967410 -174557168 - MER1B DNA MER1_type 0 337 1 5834 122 44 16 chr3 52967410 52968102 -174556476 - Tigger3b DNA MER2_type -2057 971 243 1958 124 37 48 chr3 52968103 52968481 -174556097 - THE1C LTR MaLR -1 374 1 207 347 32 63 chr3 53018654 53018844 -174505734 - L2 LINE L2 -218 3054 2871 862 240 116 4 chr3 53018942 53019175 -174505403 + MIR SINE MIR 2 260 -2 470 236 169 0 chr3 53019308 53019456 -174505122 + MER96 DNA MER1_type 3 175 0 1091 119 6 0 chr3 53019710 53019886 -174504692 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 665 291 48 9 chr3 53020347 53020574 -174504004 - MIR SINE MIR 0 262 27 2135 123 3 0 chr3 53022316 53022626 -174501952 - AluSq SINE Alu -2 311 1 468 231 166 31 chr3 53023452 53023640 -174500938 + L1ME3 LINE L1 5871 6097 -65 193 56 28 28 chr3 53023640 53023676 -174500902 + (CA)n Simple_repeat Simple_repeat 2 37 0 468 231 166 31 chr3 53023676 53023716 -174500862 + L1ME3 LINE L1 6097 6130 -32 1781 160 10 0 chr3 53023734 53024028 -174500550 - AluJb SINE Alu -15 297 1 1476 181 38 20 chr3 53024478 53024771 -174499807 - AluJb SINE Alu -14 298 1 21 0 0 0 chr3 53024784 53024805 -174499773 + AT_rich Low_complexity Low_complexity 1 21 0 1616 151 63 0 chr3 53024890 53025189 -174499389 - L1MB3 LINE L1 -2 6181 5864 2181 99 6 10 chr3 53025561 53025874 -174498704 + AluSx SINE Alu 1 312 0 241 347 118 14 chr3 53026242 53026386 -174498192 + MIR SINE MIR 97 255 -7 2364 212 57 26 chr3 53026443 53027038 -174497540 + MLT1E3 LTR MaLR 2 624 0 2724 16 0 0 chr3 53027046 53027352 -174497226 + AluY SINE Alu 1 306 -5 2126 64 67 0 chr3 53027751 53028033 -174496545 - AluY SINE Alu -10 301 1 706 243 182 0 chr3 53030412 53030626 -174493952 + L1ME1 LINE L1 5909 6161 -5 324 327 20 5 chr3 53030729 53030931 -174493647 - L1MC4a LINE L1 -1780 6028 5715 1833 109 51 44 chr3 53031134 53031428 -174493150 + AluSx SINE Alu 1 296 -16 346 322 29 23 chr3 53031849 53032023 -174492555 + L1MC/D LINE L1 5607 5781 -2027 2041 101 130 87 chr3 53032100 53032170 -174492408 - MSTB1 LTR MaLR 0 432 366 2097 104 13 22 chr3 53032170 53032486 -174492092 + AluSq SINE Alu 1 313 0 2041 101 130 87 chr3 53032486 53032829 -174491749 - MSTB1 LTR MaLR -66 366 1 358 247 24 24 chr3 53032936 53033021 -174491557 - MIR SINE MIR -152 110 26 264 216 72 52 chr3 53034141 53034238 -174490340 + MIR SINE MIR 22 120 -142 2112 125 0 0 chr3 53034528 53034824 -174489754 + AluSx SINE Alu 1 296 -16 1863 148 0 3 chr3 53035444 53035742 -174488836 - AluSx SINE Alu -15 297 1 286 345 29 0 chr3 53036153 53036292 -174488286 + L1ME LINE L1 5501 5643 -478 2214 81 0 14 chr3 53036534 53036829 -174487749 + AluSq SINE Alu 5 295 -18 329 160 200 0 chr3 53037042 53037117 -174487461 + L1ME LINE L1 5711 5800 -321 887 101 0 0 chr3 53038472 53038591 -174485987 + AluJb SINE Alu 1 119 -193 35 0 0 0 chr3 53038591 53038626 -174485952 + AT_rich Low_complexity Low_complexity 1 35 0 202 216 0 20 chr3 53040066 53040117 -174484461 + CT-rich Low_complexity Low_complexity 1 50 0 205 195 0 0 chr3 53041151 53041192 -174483386 - L2 LINE L2 -95 3177 3137 290 232 0 85 chr3 53041244 53041326 -174483252 - MIR3 SINE MIR -24 184 110 2057 138 0 0 chr3 53042046 53042351 -174482227 + AluSx SINE Alu 1 305 -7 1144 264 35 35 chr3 53042379 53042773 -174481805 + HAL1 LINE L1 35 428 -2079 582 247 13 0 chr3 53042766 53042920 -174481658 - HAL1 LINE L1 -973 1534 1379 * 2302 247 57 65 chr3 53042984 53043334 -174481244 + HAL1 LINE L1 450 801 -1706 2330 86 0 0 chr3 53043334 53043638 -174480940 - AluSx SINE Alu -8 304 1 2302 247 57 65 chr3 53043638 53043736 -174480842 + HAL1 LINE L1 801 898 -1609 348 24 0 0 chr3 53043736 53043777 -174480801 + (GAAA)n Simple_repeat Simple_repeat 3 43 0 2302 247 57 65 chr3 53043777 53043930 -174480648 + HAL1 LINE L1 898 1051 -1456 2196 110 0 3 chr3 53043930 53044239 -174480339 + AluSp SINE Alu 1 308 -5 2302 247 57 65 chr3 53044239 53044635 -174479943 + HAL1 LINE L1 1051 1441 -1066 855 179 8 0 chr3 53044636 53044792 -174479786 + AluSg/x SINE Alu 137 267 -45 * 1222 251 3 13 chr3 53044782 53045081 -174479497 + HAL1 LINE L1 1427 1722 -785 2383 101 0 3 chr3 53045185 53045491 -174479087 + AluSx SINE Alu 1 305 -7 457 217 124 12 chr3 53045500 53045661 -174478917 - MER69 DNA AcHobo -60 2466 2288 2585 238 47 24 chr3 53045682 53046443 -174478135 - MER69 DNA AcHobo -1655 871 93 342 164 231 10 chr3 53046798 53046902 -174477676 + MLT1J LTR MaLR 377 503 -8 662 293 71 21 chr3 53047005 53047069 -174477509 + MIR SINE MIR 6 65 -197 2286 121 0 0 chr3 53047069 53047375 -174477203 + AluSx SINE Alu 2 307 -5 662 293 71 21 chr3 53047375 53047549 -174477029 + MIR SINE MIR 65 256 -6 390 286 50 36 chr3 53047660 53047800 -174476778 + L2 LINE L2 3171 3312 -1 867 154 0 15 chr3 53049000 53049136 -174475442 + AluJo SINE Alu 13 146 -166 3301 136 25 35 chr3 53049148 53049370 -174475208 - L1MB3 LINE L1 -2 6181 5958 2455 83 0 0 chr3 53049370 53049670 -174474908 - AluY SINE Alu -11 300 1 3301 136 25 35 chr3 53049670 53050056 -174474522 - L1MB3 LINE L1 -225 5958 5579 556 166 15 106 chr3 53050064 53050196 -174474382 - L1MC5 LINE L1 -262 7699 7587 1815 151 11 3 chr3 53050196 53050530 -174474048 + AluJb SINE Alu 1 336 0 556 166 15 106 chr3 53050530 53050594 -174473984 - L1MC5 LINE L1 -374 7587 7519 2656 187 32 34 chr3 53050600 53051018 -174473560 - L1MD3 LINE L1 -5 7990 7572 2296 124 0 0 chr3 53051018 53051316 -174473262 + AluSx SINE Alu 1 298 -14 2656 187 32 34 chr3 53051316 53051522 -174473056 - L1MD3 LINE L1 -423 7572 7367 21 0 0 0 chr3 53051539 53051560 -174473018 + AT_rich Low_complexity Low_complexity 1 21 0 565 241 39 39 chr3 53051664 53051867 -174472711 - L1MC5 LINE L1 -568 7393 7191 389 219 8 47 chr3 53051953 53052081 -174472497 - HsTC2 DNA Tc2 0 1898 1776 * 1667 247 53 30 chr3 53052063 53052606 -174471972 - HsTC2 DNA Tc2 -1100 798 243 4814 108 13 1 chr3 53052611 53053290 -174471288 - L1PA15 LINE L1 -16 6149 5463 706 179 148 49 chr3 53053825 53054009 -174470569 - HsTC2 DNA Tc2 -1653 245 34 2152 109 0 7 chr3 53054009 53054303 -174470275 + AluSx SINE Alu 1 292 -20 706 179 148 49 chr3 53054303 53054341 -174470237 - HsTC2 DNA Tc2 -1864 34 1 271 286 133 0 chr3 53055028 53055133 -174469445 - MER103 DNA DNA -46 120 2 250 203 27 54 chr3 53055139 53055213 -174469365 + HsTC2 DNA Tc2 1 72 -1826 2136 102 50 0 chr3 53055235 53055518 -174469060 + AluSx SINE Alu 1 297 -15 753 181 0 0 chr3 53055980 53056113 -174468465 - L1MB7 LINE L1 -9 6175 6043 1150 91 0 0 chr3 53056125 53056279 -174468299 + LTR49 LTR ERV1 1 154 -441 583 216 23 47 chr3 53056364 53056535 -174468043 + LTR49 LTR ERV1 426 592 -3 2094 117 0 46 chr3 53056542 53056578 -174468000 - AluSx SINE Alu -1 311 275 297 0 0 0 chr3 53056578 53056611 -174467967 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 2094 117 0 46 chr3 53056611 53056900 -174467678 - AluSx SINE Alu -37 275 1 457 284 74 6 chr3 53057267 53057434 -174467144 + MIR SINE MIR 33 210 -52 394 294 117 20 chr3 53057568 53057816 -174466762 + L3 LINE CR1 1213 1484 -93 498 231 33 82 chr3 53058239 53058421 -174466157 - MER5B DNA MER1_type -1 177 5 464 255 87 20 chr3 53058753 53058902 -174465676 + MIR SINE MIR 104 262 0 2205 114 3 0 chr3 53058911 53059210 -174465368 - AluSx SINE Alu -12 300 1 2388 122 94 5 chr3 53059479 53059872 -174464706 + MSTA LTR MaLR 1 428 0 239 253 13 25 chr3 53060587 53060666 -174463912 + CT-rich Low_complexity Low_complexity 1 78 0 279 254 27 27 chr3 53061239 53061349 -174463229 - LTR33 LTR ERVL 0 521 412 261 230 121 82 chr3 53061687 53062079 -174462499 + L1ME4a LINE L1 5693 6103 -18 345 332 88 21 chr3 53062134 53062327 -174462251 + L1ME LINE L1 5570 5775 -346 2303 104 13 0 chr3 53062461 53062769 -174461809 - AluSx SINE Alu 0 312 1 238 216 20 0 chr3 53063700 53063751 -174460827 - MLT1G1 LTR MaLR 0 595 544 978 247 30 54 chr3 53063796 53064132 -174460446 - MLT1G3 LTR MaLR -199 331 4 194 248 0 145 chr3 53064512 53064580 -174459998 + L2 LINE L2 2925 2971 -301 2076 147 0 3 chr3 53064580 53064893 -174459685 - AluSx SINE Alu 0 312 1 194 248 0 145 chr3 53064893 53064941 -174459637 + L2 LINE L2 2971 3024 -248 268 271 0 12 chr3 53065200 53065285 -174459293 - Charlie8 DNA MER1_type -2255 162 79 2108 117 7 0 chr3 53065589 53065907 -174458671 + AluSq SINE Alu 1 320 0 663 331 46 36 chr3 53065920 53066337 -174458241 - ERVL LTR ERVL -618 5146 4726 713 292 19 15 chr3 53066549 53066816 -174457762 - ERVL LTR ERVL -1253 4401 4134 1779 322 94 32 chr3 53067191 53067561 -174457017 - ERVL LTR ERVL -1888 3766 3421 2511 186 77 2 chr3 53067561 53068065 -174456513 - MER34 LTR ERV1 0 542 1 1779 322 94 32 chr3 53068065 53069194 -174455384 - ERVL LTR ERVL -2233 3421 2139 197 175 25 0 chr3 53069278 53069318 -174455260 + MIR SINE MIR 160 200 -62 2110 129 0 0 chr3 53069324 53069603 -174454975 + AluSx SINE Alu 1 279 -33 339 303 67 0 chr3 53069678 53069767 -174454811 - L2 LINE L2 -2 3270 3176 584 268 48 43 chr3 53070021 53070230 -174454348 + MIR SINE MIR 21 230 -32 223 241 18 28 chr3 53070571 53070654 -174453924 - MIR SINE MIR -89 119 41 1858 153 29 7 chr3 53070786 53071067 -174453511 + AluJb SINE Alu 1 287 -25 2205 74 19 0 chr3 53071100 53071371 -174453207 + AluY SINE Alu 29 304 -7 181 313 0 30 chr3 53071388 53071455 -174453123 + L2 LINE L2 3173 3237 -35 216 0 0 0 chr3 53071467 53071491 -174453087 + (TAGA)n Simple_repeat Simple_repeat 4 27 0 551 273 66 48 chr3 53071503 53071730 -174452848 - MIR SINE MIR -30 232 2 1625 179 29 0 chr3 53072560 53072833 -174451745 - AluSx SINE Alu -18 294 14 485 226 154 23 chr3 53072840 53073061 -174451517 - LTR16A1 LTR ERVL -48 409 160 324 189 54 0 chr3 53073524 53073598 -174450980 - MIR SINE MIR -132 130 53 2563 193 74 0 chr3 53073615 53074143 -174450435 - MLT1F1 LTR MaLR 0 567 1 574 282 105 43 chr3 53074834 53075002 -174449576 + LTR16B LTR ERVL 141 297 -167 775 159 77 39 chr3 53075002 53075184 -174449394 + MER53 DNA DNA 1 189 0 574 282 105 43 chr3 53075184 53075320 -174449258 + LTR16B LTR ERVL 297 464 0 201 74 0 0 chr3 53075328 53075355 -174449223 + (CGGGG)n Simple_repeat Simple_repeat 1 27 0 371 255 40 54 chr3 53075540 53075689 -174448889 - MER5A DNA MER1_type -5 184 38 2273 98 7 3 chr3 53075849 53076146 -174448432 - AluSx SINE Alu -14 298 1 1806 184 0 0 chr3 53076348 53076658 -174447920 - AluJo SINE Alu 0 312 3 333 0 0 0 chr3 53077031 53077068 -174447510 + (CAGG)n Simple_repeat Simple_repeat 1 37 0 199 295 16 0 chr3 53077241 53077302 -174447276 - L2 LINE L2 -3 3269 3208 2217 119 0 6 chr3 53079643 53079954 -174444624 - AluSg SINE Alu -1 309 1 1736 166 61 37 chr3 53080085 53080494 -174444084 + L1MB5 LINE L1 5746 6164 -10 292 285 29 29 chr3 53081435 53081572 -174443006 - MLT1K LTR MaLR -440 148 12 373 321 116 15 chr3 53081587 53081928 -174442650 - L2 LINE L2 -222 3050 2678 28 29 0 0 chr3 53082049 53082084 -174442494 + AT_rich Low_complexity Low_complexity 1 35 0 196 226 0 0 chr3 53082478 53082509 -174442069 - L2 LINE L2 -2833 481 451 2073 323 28 24 chr3 53082876 53083161 -174441417 - ERVL LTR ERVL -1415 4349 4067 2308 104 0 0 chr3 53083161 53083458 -174441120 - AluSx SINE Alu -11 301 5 2073 323 28 24 chr3 53083458 53084136 -174440442 - ERVL LTR ERVL -1697 4067 3382 1576 217 3 7 chr3 53084481 53084776 -174439802 - AluJo SINE Alu -18 294 1 2536 52 3 0 chr3 53084780 53085070 -174439508 - AluY SINE Alu -20 291 1 226 294 59 39 chr3 53085169 53085271 -174439307 - MIR SINE MIR -65 143 40 918 240 28 13 chr3 53085696 53085925 -174438653 + MIR SINE MIR 2 234 -28 403 276 22 22 chr3 53087103 53087237 -174437341 + MER94 DNA DNA 1 134 0 25 0 0 0 chr3 53087452 53087477 -174437101 + AT_rich Low_complexity Low_complexity 1 25 0 2222 135 0 3 chr3 53087479 53087791 -174436787 + AluSx SINE Alu 1 311 -1 268 247 78 0 chr3 53087860 53087937 -174436641 + MIR SINE MIR 26 108 -154 1825 145 0 56 chr3 53088103 53088406 -174436172 + AluJb SINE Alu 1 286 -26 383 76 25 38 chr3 53088979 53089058 -174435520 + (TTCC)n Simple_repeat Simple_repeat 1 78 0 2087 143 13 0 chr3 53089058 53089359 -174435219 - AluSx SINE Alu -7 305 1 444 266 234 0 chr3 53089641 53089855 -174434723 - MLT1L LTR MaLR 0 615 352 737 189 33 0 chr3 53089932 53090054 -174434524 + FLAM_C SINE Alu 6 131 -12 536 285 32 16 chr3 53090062 53090248 -174434330 - MLT1L LTR MaLR -342 273 85 2155 118 0 0 chr3 53091416 53091705 -174432873 - AluSq SINE Alu -24 289 1 760 251 61 84 chr3 53092383 53092818 -174431760 - MLT1G LTR MaLR -7 548 146 1917 152 0 7 chr3 53092818 53093125 -174431453 + AluJb SINE Alu 5 309 0 760 251 61 84 chr3 53093125 53093267 -174431311 - MLT1G LTR MaLR -409 146 2 22 0 0 0 chr3 53093876 53093898 -174430680 + AT_rich Low_complexity Low_complexity 1 22 0 394 264 132 57 chr3 53094245 53094457 -174430121 + MIR SINE MIR 35 262 0 2241 104 0 0 chr3 53095046 53095328 -174429250 + AluSq SINE Alu 1 282 -31 232 36 0 0 chr3 53095328 53095356 -174429222 + (CAAA)n Simple_repeat Simple_repeat 1 48 0 228 261 62 0 chr3 53095584 53095649 -174428929 + L2 LINE L2 3235 3303 -10 584 275 89 17 chr3 53095916 53096186 -174428392 + L1ME3A LINE L1 5078 5327 -843 1954 172 17 17 chr3 53096186 53096534 -174428044 - MER7A DNA MER2_type 0 346 1 584 275 89 17 chr3 53096534 53096783 -174427795 + L1ME3A LINE L1 5327 5695 -475 838 150 0 0 chr3 53096787 53096907 -174427671 + FLAM_C SINE Alu 5 124 -19 1739 199 0 0 chr3 53096921 53097218 -174427360 + AluJb SINE Alu 3 299 -13 1349 233 63 72 chr3 53097218 53097707 -174426871 + L1ME3A LINE L1 5686 6170 0 365 263 20 0 chr3 53097914 53098013 -174426565 + MLT1K LTR MaLR 486 586 -2 1929 150 7 0 chr3 53098104 53098416 -174426162 - AluJb SINE Alu 0 314 1 554 148 23 0 chr3 53099036 53099124 -174425454 - LTR47A LTR ERVL 0 452 363 336 244 0 0 chr3 53099124 53099214 -174425364 + (TA)n Simple_repeat Simple_repeat 2 91 0 2421 57 0 0 chr3 53099214 53099528 -174425050 - AluY SINE Alu 0 314 1 486 0 0 0 chr3 53099528 53099582 -174424996 + (TA)n Simple_repeat Simple_repeat 2 55 0 1905 117 10 45 chr3 53099584 53099875 -174424703 - AluSx SINE Alu -31 281 1 1781 152 97 3 chr3 53099875 53100217 -174424361 - LTR47A LTR ERVL -78 374 1 2287 108 7 0 chr3 53100615 53100920 -174423658 - AluSx SINE Alu -5 307 1 2049 100 69 0 chr3 53101612 53101901 -174422677 + AluSx SINE Alu 3 311 -1 619 178 78 44 chr3 53102496 53102676 -174421902 - L1ME4a LINE L1 -1 6120 5935 2085 136 0 13 chr3 53102714 53103023 -174421555 - AluSx SINE Alu -7 305 1 392 183 24 0 chr3 53103327 53103409 -174421169 + LTR16A1 LTR ERVL 374 457 0 311 85 0 0 chr3 53103562 53103609 -174420969 - Alu SINE Alu -4 297 251 * 318 153 3 0 chr3 53103593 53103652 -174420926 - Alu SINE Alu -254 48 1 324 268 134 7 chr3 53104532 53104674 -174419904 + MIR SINE MIR 28 187 -75 1047 279 116 14 chr3 53104682 53105120 -174419458 - LTR16C LTR ERVL -8 483 1 228 315 45 11 chr3 53105272 53105361 -174419217 - MIR SINE MIR -85 177 86 1149 111 0 20 chr3 53106219 53106403 -174418175 - AluSp SINE Alu 0 315 135 549 196 0 0 chr3 53106414 53106521 -174418057 - L1MB4 LINE L1 -42 6138 6032 470 232 187 26 chr3 53106601 53106756 -174417822 - MIR SINE MIR -49 213 34 351 324 77 24 chr3 53107414 53107584 -174416994 - MIR SINE MIR -2 260 82 237 318 130 13 chr3 53108706 53108860 -174415718 - MIR3 SINE MIR -12 196 25 1202 228 63 35 chr3 53109234 53109629 -174414949 + LTR16A1 LTR ERVL 52 457 0 2411 85 0 0 chr3 53110519 53110812 -174413766 - AluSq SINE Alu -20 293 1 304 264 0 0 chr3 53110861 53110948 -174413630 + L1ME4a LINE L1 5966 6052 -69 2051 138 10 0 chr3 53112797 53113093 -174411485 + AluSx SINE Alu 3 301 -11 718 250 105 69 chr3 53114303 53114612 -174409966 + MLT1I LTR MaLR 2 329 -80 2136 108 14 17 chr3 53114612 53114907 -174409671 - AluSx SINE Alu -18 294 1 718 250 105 69 chr3 53114907 53114989 -174409589 + MLT1I LTR MaLR 329 407 -2 2524 64 0 0 chr3 53115107 53115402 -174409176 + AluY SINE Alu 1 295 -16 1109 217 27 89 chr3 53115494 53115863 -174408715 - LTR16A LTR ERVL 0 450 105 224 163 20 20 chr3 53116366 53116415 -174408163 + (CA)n Simple_repeat Simple_repeat 2 50 0 351 270 40 32 chr3 53116676 53116802 -174407776 + MIR3 SINE MIR 35 161 -47 939 173 45 11 chr3 53117168 53117347 -174407231 - MER5A DNA MER1_type -1 188 4 24 0 0 0 chr3 53117433 53117457 -174407121 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 53118237 53118258 -174406320 + AT_rich Low_complexity Low_complexity 1 21 0 324 83 0 0 chr3 53118760 53118808 -174405770 + (CGG)n Simple_repeat Simple_repeat 1 48 0 218 104 0 42 chr3 53119126 53119174 -174405404 + (CGG)n Simple_repeat Simple_repeat 1 46 0 40 49 0 0 chr3 53119420 53119481 -174405097 + GC_rich Low_complexity Low_complexity 1 61 0 229 227 43 43 chr3 53119580 53119743 -174404835 + (CGGG)n Simple_repeat Simple_repeat 4 166 0 26 0 0 0 chr3 53119851 53119877 -174404701 + GC_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 53120121 53120142 -174404436 + GC_rich Low_complexity Low_complexity 1 21 0 248 231 15 15 chr3 53120241 53120306 -174404272 - MIR SINE MIR -57 151 87 219 273 80 23 chr3 53121095 53121183 -174403395 + MIR SINE MIR 92 184 -78 289 266 21 75 chr3 53121945 53122016 -174402562 + L2 LINE L2 3184 3250 -22 2315 112 0 0 chr3 53122016 53122319 -174402259 - AluSx SINE Alu -9 303 1 289 266 21 75 chr3 53122319 53122341 -174402237 + L2 LINE L2 3250 3272 0 604 259 118 0 chr3 53122366 53122536 -174402042 - MIR SINE MIR -15 247 58 1288 260 68 60 chr3 53123064 53123360 -174401218 + L2 LINE L2 2807 3110 -203 2084 128 0 0 chr3 53123360 53123649 -174400929 - AluSx SINE Alu -23 289 1 1288 260 68 60 chr3 53123649 53123855 -174400723 + L2 LINE L2 3110 3313 0 520 258 172 6 chr3 53125225 53125388 -174399190 - MIR SINE MIR -22 240 51 278 270 90 11 chr3 53125435 53125524 -174399054 - MIR SINE MIR -78 184 89 248 312 39 13 chr3 53125676 53125753 -174398825 + L2 LINE L2 3183 3261 -11 384 317 103 0 chr3 53126642 53126787 -174397791 + MIR SINE MIR 90 249 -13 553 303 7 7 chr3 53127012 53127157 -174397421 - MIR3 SINE MIR -25 183 39 740 270 65 39 chr3 53127689 53127919 -174396659 + MIR SINE MIR 17 252 -10 257 313 12 0 chr3 53128864 53128944 -174395634 + MER117 DNA MER1_type 6 86 -111 4606 131 30 36 chr3 53128944 53129465 -174395113 + L1MA10 LINE L1 5513 6036 -298 2764 107 46 10 chr3 53129465 53129878 -174394700 + MSTA LTR MaLR 1 428 0 4606 131 30 36 chr3 53129878 53130091 -174394487 + L1MA10 LINE L1 6036 6244 -90 2361 96 3 0 chr3 53130091 53130383 -174394195 + AluSp SINE Alu 1 293 -20 4606 131 30 36 chr3 53130383 53130473 -174394105 + L1MA10 LINE L1 6244 6333 -1 619 270 84 105 chr3 53130572 53130970 -174393608 + MLT1K LTR MaLR 2 386 -202 1188 179 111 92 chr3 53130970 53131296 -174393282 + THE1C LTR MaLR 1 336 -39 2496 76 0 0 chr3 53131296 53131599 -174392979 - AluY SINE Alu -8 303 1 1188 179 111 92 chr3 53131599 53131640 -174392938 + THE1C LTR MaLR 336 375 0 619 270 84 105 chr3 53131640 53131822 -174392756 + MLT1K LTR MaLR 386 570 -18 3332 104 83 10 chr3 53132072 53132563 -174392015 + MER1A DNA MER1_type 1 527 0 441 264 57 31 chr3 53132594 53132787 -174391791 + L1ME4a LINE L1 5630 5827 -294 870 176 31 57 chr3 53133311 53133504 -174391074 - MER5A DNA MER1_type -1 188 1 261 322 68 25 chr3 53134077 53134195 -174390383 + MIR3 SINE MIR 41 163 -45 497 250 7 68 chr3 53135781 53135922 -174388656 + MER5B DNA MER1_type 1 145 -44 2441 81 0 3 chr3 53135922 53136219 -174388359 + AluSq SINE Alu 1 296 -17 497 250 7 68 chr3 53136219 53136240 -174388338 + MER5B DNA MER1_type 145 166 -23 2187 71 16 58 chr3 53137300 53137611 -174386967 + AluSc SINE Alu 1 298 -11 370 339 111 37 chr3 53138049 53138480 -174386098 - L2 LINE L2 -2 3270 2808 630 271 32 44 chr3 53138957 53139208 -174385370 - LTR16A1 LTR ERVL -49 408 161 370 252 87 29 chr3 53139433 53139585 -174384993 - MIR SINE MIR -68 140 16 201 245 255 41 chr3 53139683 53139781 -174384797 - MIR SINE MIR -59 149 31 378 0 0 0 chr3 53140258 53140300 -174384278 + (TG)n Simple_repeat Simple_repeat 2 43 0 378 0 0 0 chr3 53140668 53140710 -174383868 + (TTTTA)n Simple_repeat Simple_repeat 5 46 0 2001 103 63 0 chr3 53140713 53140984 -174383594 - AluSq SINE Alu -25 288 1 728 181 43 16 chr3 53141021 53141209 -174383369 - L1ME3A LINE L1 -71 6099 5907 2421 155 46 0 chr3 53141211 53141624 -174382954 + MSTB1 LTR MaLR 1 432 0 459 130 0 100 chr3 53141925 53142025 -174382553 - MER5B DNA MER1_type 0 178 89 525 266 6 62 chr3 53142311 53142488 -174382090 + MIR SINE MIR 82 248 -14 499 249 156 12 chr3 53143660 53143833 -174380745 + MLT1L LTR MaLR 409 606 -9 230 310 97 18 chr3 53143849 53143962 -174380616 - MIR3 SINE MIR -84 124 3 577 269 86 47 chr3 53144409 53144710 -174379868 - MLT1L LTR MaLR -47 568 256 311 311 0 14 chr3 53144715 53144789 -174379789 - MIR SINE MIR -158 104 32 879 158 76 109 chr3 53144789 53144979 -174379599 - MER33 DNA MER1_type -2266 319 143 1763 83 0 5 chr3 53144979 53145195 -174379383 - AluSc SINE Alu -94 215 1 879 158 76 109 chr3 53145195 53145333 -174379245 - MER33 DNA MER1_type -2442 143 2 311 227 102 0 chr3 53145498 53145586 -174378992 + MIR3 SINE MIR 99 195 -13 895 268 135 38 chr3 53146716 53147213 -174377365 + MLT1H LTR MaLR 1 545 -4 253 231 11 44 chr3 53147279 53147370 -174377208 - L1P LINE L1 -2187 3959 3872 2199 105 7 0 chr3 53147394 53147690 -174376888 - AluSp SINE Alu -15 298 1 2054 251 33 3 chr3 53147699 53148300 -174376278 - L1M4 LINE L1 -1675 4471 3853 1766 285 44 28 chr3 53148315 53148884 -174375694 + MLT1E LTR MaLR 14 591 -2 253 247 14 27 chr3 53148908 53148981 -174375597 - L1M4 LINE L1 -2333 3813 3742 1157 193 24 0 chr3 53149018 53149225 -174375353 - U3 snRNA snRNA 0 217 6 2164 96 0 4 chr3 53149251 53149531 -174375047 - AluSq SINE Alu -34 279 1 806 217 103 63 chr3 53149551 53149711 -174374867 - L1M4 LINE L1 -2409 3737 3585 1564 170 16 77 chr3 53149711 53150023 -174374555 - AluJo SINE Alu -13 299 7 806 217 103 63 chr3 53150023 53150162 -174374416 - L1M4 LINE L1 -2561 3585 3426 2272 94 10 0 chr3 53150556 53150853 -174373725 + AluSg SINE Alu 1 300 -10 1683 234 108 21 chr3 53150997 53151557 -174373021 - MLT1G3 LTR MaLR 0 530 1 180 0 0 0 chr3 53151934 53151954 -174372624 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 182 167 24 48 chr3 53152019 53152061 -174372517 + L2 LINE L2 3231 3271 -1 1181 263 129 26 chr3 53152851 53153277 -174371301 - MLT1F LTR MaLR -72 470 1 290 290 163 75 chr3 53153383 53153607 -174370971 + L2 LINE L2 2812 3015 -257 2258 157 60 45 chr3 53153607 53154027 -174370551 + MSTB LTR MaLR 1 426 0 290 290 163 75 chr3 53154027 53154226 -174370352 + L2 LINE L2 3015 3272 0 223 313 81 0 chr3 53154239 53154338 -174370240 - MIR SINE MIR -109 153 47 2913 234 84 10 chr3 53155373 53156139 -174368439 + L1ME2 LINE L1 5343 6164 0 1996 89 23 0 chr3 53156145 53156403 -174368175 + AluY SINE Alu 34 297 -14 358 293 95 34 chr3 53156448 53156595 -174367983 - MER117 DNA MER1_type -2 195 40 259 326 51 0 chr3 53157329 53157427 -174367151 + MIR SINE MIR 111 213 -49 1004 132 85 92 chr3 53158010 53158234 -174366344 + L1ME2 LINE L1 5888 6284 -50 2364 113 0 0 chr3 53158234 53158543 -174366035 + AluSx SINE Alu 1 309 -3 1004 132 85 92 chr3 53158543 53158594 -174365984 + L1ME2 LINE L1 6284 6334 0 351 275 24 82 chr3 53158972 53159179 -174365399 + MLT1K LTR MaLR 2 196 -392 358 280 61 38 chr3 53159264 53159396 -174365182 + MLT1K LTR MaLR 446 580 -8 1587 168 0 11 chr3 53160093 53160361 -174364217 + AluJb SINE Alu 39 303 -9 1067 278 53 42 chr3 53160578 53161560 -174363018 - L1MEd LINE L1 -4621 1689 631 273 354 66 29 chr3 53161562 53161836 -174362742 - L1MEd LINE L1 -5510 609 326 211 225 0 0 chr3 53162165 53162205 -174362373 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 1610 125 83 130 chr3 53162216 53162577 -174362001 + MER2 DNA MER2_type 1 344 0 318 242 81 30 chr3 53162652 53162751 -174361827 - HAL1b LINE L1 -1180 168 65 2231 122 0 0 chr3 53162974 53163277 -174361301 - AluSg SINE Alu -7 303 1 24 32 0 0 chr3 53163926 53163957 -174360621 + AT_rich Low_complexity Low_complexity 1 31 0 2041 116 0 7 chr3 53164185 53164504 -174360074 + AluSx SINE Alu 1 317 0 251 327 58 19 chr3 53165177 53165281 -174359297 + MIR SINE MIR 31 138 -70 192 152 0 0 chr3 53165282 53165315 -174359263 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 379 235 157 0 chr3 53165446 53165548 -174359030 - MIR SINE MIR -66 196 79 295 333 92 0 chr3 53166352 53166493 -174358085 - MIR SINE MIR -90 172 19 1225 236 126 40 chr3 53167157 53167577 -174357001 - LTR16A1 LTR ERVL 0 457 2 313 321 46 0 chr3 53168146 53168255 -174356323 - MLT1L LTR MaLR 0 615 502 558 318 13 34 chr3 53168436 53168669 -174355909 - ERVL LTR ERVL -365 5399 5172 680 309 85 20 chr3 53168956 53169365 -174355213 - LTR33 LTR ERVL -49 472 11 658 294 52 28 chr3 53169390 53169858 -174354720 - ERVL LTR ERVL -894 4870 4356 16401 175 22 18 chr3 53169871 53175319 -174349259 + L1MA4 LINE L1 4 5484 -998 2333 85 0 10 chr3 53175319 53175614 -174348964 - AluSc SINE Alu -17 292 1 16401 175 22 18 chr3 53175614 53176588 -174347990 + L1MA4 LINE L1 5484 6453 -29 4534 301 91 43 chr3 53176590 53177854 -174346724 - ERVL LTR ERVL -1420 4344 3142 1720 171 0 27 chr3 53177854 53178170 -174346408 - AluJb SINE Alu 0 308 1 4534 301 91 43 chr3 53178170 53179230 -174345348 - ERVL LTR ERVL -2622 3142 1907 426 322 89 63 chr3 53179484 53180009 -174344569 - ERVL LTR ERVL -3939 1825 1287 788 217 19 6 chr3 53180027 53180188 -174344390 - MER5B DNA MER1_type -15 163 1 293 324 37 87 chr3 53180242 53180597 -174343981 - ERVL LTR ERVL -4559 1205 869 2482 110 67 14 chr3 53181075 53181421 -174343157 + THE1B LTR MaLR 1 364 0 623 303 129 33 chr3 53181428 53181847 -174342731 - LTR67 LTR ERVL -32 525 67 1753 181 32 26 chr3 53181852 53181974 -174342604 - MLT2C1 LTR ERVL -53 344 224 2145 111 10 0 chr3 53181974 53182263 -174342315 - AluSp SINE Alu -20 293 2 1753 181 32 26 chr3 53182263 53182482 -174342096 - MLT2C1 LTR ERVL -173 224 1 338 277 164 6 chr3 53182628 53182787 -174341791 - MIR SINE MIR -9 253 70 679 255 22 16 chr3 53182939 53183123 -174341455 - MER5A DNA MER1_type -4 185 1 259 229 16 0 chr3 53183733 53183794 -174340784 + MIR SINE MIR 110 171 -91 2337 156 41 14 chr3 53184359 53184761 -174339817 + MER95 LTR ERV 1 416 -15 2250 112 7 0 chr3 53184761 53185065 -174339513 - AluSx SINE Alu -6 306 1 2337 156 41 14 chr3 53185065 53185080 -174339498 + MER95 LTR ERV 416 429 -2 1410 197 86 42 chr3 53185718 53186078 -174338500 - MLT1B LTR MaLR 0 390 15 650 278 25 0 chr3 53186189 53186351 -174338227 - MER117 DNA MER1_type -1 196 31 333 309 0 0 chr3 53186361 53186458 -174338120 - MLT1K LTR MaLR -11 577 481 442 288 118 65 chr3 53186491 53186831 -174337747 - MLT1K LTR MaLR -219 369 12 692 249 96 42 chr3 53186831 53187164 -174337414 - MER34B LTR ERV1 0 565 215 2312 86 0 10 chr3 53188194 53188495 -174336083 + AluY SINE Alu 1 298 -13 316 299 0 13 chr3 53188567 53188644 -174335934 + MIR SINE MIR 29 104 -158 2031 155 0 0 chr3 53188655 53188965 -174335613 - AluSx SINE Alu -2 310 1 1759 165 7 3 chr3 53189433 53189718 -174334860 - AluJb SINE Alu -26 286 1 266 258 15 0 chr3 53189741 53189807 -174334771 + MLT1K LTR MaLR 180 246 -342 1884 141 3 3 chr3 53189819 53190127 -174334451 - AluSx SINE Alu 0 308 1 277 163 0 0 chr3 53190428 53190471 -174334107 - U2 snRNA snRNA -145 43 1 267 316 153 11 chr3 53192113 53192290 -174332288 - MIR SINE MIR -14 248 47 738 272 93 38 chr3 53192909 53193548 -174331030 - L1MC4a LINE L1 -454 5667 5264 380 102 5 19 chr3 53193687 53193766 -174330812 - MLT2A1 LTR ERVL 0 444 395 185 95 0 63 chr3 53193766 53193829 -174330749 + (TA)n Simple_repeat Simple_repeat 1 59 0 2952 72 25 15 chr3 53193848 53194248 -174330330 - MLT2A1 LTR ERVL -40 404 1 3225 232 38 51 chr3 53194734 53195427 -174329151 + L1M4b LINE L1 931 1631 -5507 2277 98 3 0 chr3 53195427 53195723 -174328855 - AluSp SINE Alu -16 297 1 3225 232 38 51 chr3 53195723 53196685 -174327893 + L1M4b LINE L1 1631 2723 -4415 2324 104 0 3 chr3 53196821 53197129 -174327449 + AluY SINE Alu 1 307 -4 21 0 0 0 chr3 53197213 53197234 -174327344 + AT_rich Low_complexity Low_complexity 1 21 0 3424 220 56 59 chr3 53197265 53197718 -174326860 + L1M4b LINE L1 2604 3057 -3900 1943 158 42 6 chr3 53197718 53198054 -174326524 - MER7A DNA MER2_type 0 346 1 3424 220 56 59 chr3 53198054 53198780 -174325798 + L1M4b LINE L1 3057 3770 -3187 1818 154 10 26 chr3 53198780 53199092 -174325486 + AluSx SINE Alu 4 310 -2 3424 220 56 59 chr3 53199092 53199309 -174325269 + L1M4b LINE L1 3770 3986 -2971 546 237 59 0 chr3 53199312 53199447 -174325131 + MER45R DNA AcHobo 1438 1580 -1 192 343 55 41 chr3 53199564 53199710 -174324868 + L2 LINE L2 2829 2976 -338 9012 117 100 33 chr3 53200092 53201685 -174322893 + pTR5 LTR ERV1 740 2438 0 429 323 24 6 chr3 53201690 53201857 -174322721 + MIR SINE MIR 58 227 -35 517 234 47 129 chr3 53202055 53202333 -174322245 - MIR SINE MIR -5 257 3 1550 116 127 0 chr3 53202358 53202625 -174321953 - AluSx SINE Alu -11 301 1 191 316 0 63 chr3 53202643 53202722 -174321856 - MIR SINE MIR -29 233 160 419 318 15 15 chr3 53203179 53203311 -174321267 - MIR SINE MIR -130 132 1 270 0 0 0 chr3 53203329 53203359 -174321219 + (T)n Simple_repeat Simple_repeat 1 30 0 332 308 11 0 chr3 53203410 53203501 -174321077 - MLT1J1 LTR MaLR -284 162 71 466 222 136 19 chr3 53203692 53203854 -174320724 + MIR3 SINE MIR 17 197 -11 24 0 0 0 chr3 53204207 53204231 -174320347 + AT_rich Low_complexity Low_complexity 1 24 0 315 256 85 47 chr3 53204294 53204423 -174320155 + MIR SINE MIR 34 167 -95 * 742 231 22 52 chr3 53204418 53204647 -174319931 + L2 LINE L2 3085 3306 -7 204 296 0 49 chr3 53204642 53204723 -174319855 + MIR SINE MIR 186 262 0 * 556 327 93 19 chr3 53204741 53205151 -174319427 - L2 LINE L2 -62 3251 2812 333 268 67 71 chr3 53205860 53206084 -174318494 - L2 LINE L2 -669 2645 2423 2161 185 13 6 chr3 53206540 53206997 -174317581 + MER89 LTR ERV1 1 559 0 2672 65 128 8 chr3 53207040 53207440 -174317138 - LTR7 LTR ERV1 -2 448 1 344 265 59 0 chr3 53207790 53207892 -174316686 + MIR SINE MIR 24 131 -77 392 310 16 11 chr3 53207922 53208106 -174316472 + MER5A DNA MER1_type 1 185 -4 309 268 104 93 chr3 53208394 53208425 -174316153 - MLT1H LTR MaLR -7 542 513 2096 107 3 0 chr3 53208425 53208716 -174315862 + AluSx SINE Alu 1 292 -20 309 268 104 93 chr3 53208716 53208867 -174315711 - MLT1H LTR MaLR -36 513 358 1087 217 12 15 chr3 53209017 53209259 -174315319 - MLT1H LTR MaLR -265 284 1 647 229 40 17 chr3 53209481 53209656 -174314922 - MER97a DNA MER1_type? -715 179 1 345 327 28 0 chr3 53209830 53209937 -174314641 - MIR SINE MIR -92 170 61 1815 94 112 25 chr3 53209937 53210223 -174314355 + AluY SINE Alu 1 311 0 769 279 41 0 chr3 53210374 53210571 -174314007 + MER63A DNA MER1_type 1 205 -5 1786 110 28 0 chr3 53210678 53210932 -174313646 + AluSg SINE Alu 41 301 -9 280 160 0 20 chr3 53211206 53211256 -174313322 - MER50-int LTR ERV1 -7156 49 1 4327 130 21 37 chr3 53211257 53211867 -174312711 - MER50 LTR ERV1 -23 711 113 1349 152 159 11 chr3 53211867 53212131 -174312447 + AluSq SINE Alu 1 303 0 4327 130 21 37 chr3 53212131 53212243 -174312335 - MER50 LTR ERV1 -621 113 1 1492 201 131 25 chr3 53212299 53212697 -174311881 + MER74B LTR ERVL 1 440 -182 536 213 22 5 chr3 53214137 53214279 -174310299 + L1ME1 LINE L1 6020 6163 -1 438 180 60 0 chr3 53214462 53214562 -174310016 + MER5B DNA MER1_type 36 141 -37 269 308 0 0 chr3 53214957 53215035 -174309543 + MIR3 SINE MIR 94 171 -37 1522 183 148 20 chr3 53215809 53216213 -174308365 - MLT1C LTR MaLR -1 466 11 346 229 18 37 chr3 53216567 53216676 -174307902 + MER110A LTR ERV1 70 176 -292 1454 173 44 0 chr3 53216848 53217097 -174307481 + AluJb SINE Alu 1 260 -52 237 283 54 11 chr3 53217216 53217308 -174307270 + MER110 LTR ERV1 394 489 -2 387 0 0 0 chr3 53217337 53217380 -174307198 + (CA)n Simple_repeat Simple_repeat 2 44 0 2300 66 0 0 chr3 53217388 53217674 -174306904 - AluY SINE Alu -25 286 1 184 125 94 0 chr3 53217775 53217807 -174306771 + MIR SINE MIR 132 166 -96 502 277 90 18 chr3 53218613 53218918 -174305660 - L1MC4 LINE L1 -314 7728 7292 244 266 0 0 chr3 53219029 53219093 -174305485 - L1ME LINE L1 -562 5559 5496 227 344 102 25 chr3 53219848 53220005 -174304573 + L2 LINE L2 3077 3245 -27 2902 224 91 12 chr3 53220695 53221501 -174303077 - L1ME1 LINE L1 -94 6072 5207 586 286 106 9 chr3 53222063 53222280 -174302298 - MIR SINE MIR -12 250 13 1622 173 59 78 chr3 53222516 53222686 -174301892 + MLT1C LTR MaLR 2 174 -293 2017 144 0 0 chr3 53222686 53222998 -174301580 - AluSx SINE Alu 0 312 1 1622 173 59 78 chr3 53222998 53223302 -174301276 + MLT1C LTR MaLR 174 467 0 230 217 179 19 chr3 53223443 53223549 -174301029 + MLT2E LTR ERVL 506 628 0 449 254 23 8 chr3 53223779 53223909 -174300669 + MLT2E LTR ERVL 1 132 -496 453 249 24 30 chr3 53225502 53225667 -174298911 - L1ME4a LINE L1 -7 6114 5951 682 263 19 76 chr3 53225748 53225845 -174298733 - MIR SINE MIR -10 252 151 1998 127 0 0 chr3 53225845 53226149 -174298429 - AluSx SINE Alu 0 304 1 682 263 19 76 chr3 53226149 53226312 -174298266 - MIR SINE MIR -111 151 6 200 176 0 0 chr3 53226434 53226468 -174298110 - L2 LINE L2 -20 3252 3219 262 373 79 0 chr3 53227402 53227579 -174296999 - MIR SINE MIR -22 240 50 633 275 132 41 chr3 53228647 53229275 -174295303 - L2 LINE L2 0 3313 2618 206 146 49 0 chr3 53229308 53229349 -174295229 - L2 LINE L2 -803 2511 2469 249 158 51 9 chr3 53229441 53229502 -174295076 - MIR SINE MIR -68 140 73 790 280 114 30 chr3 53230185 53230546 -174294032 - LTR33 LTR ERVL -121 400 10 2256 89 0 0 chr3 53230602 53230905 -174293673 + AluY SINE Alu 1 303 -8 248 332 166 21 chr3 53230916 53231157 -174293421 + L3b LINE CR1 1295 1570 -13 24 32 0 0 chr3 53231409 53231440 -174293138 + AT_rich Low_complexity Low_complexity 1 31 0 197 296 87 9 chr3 53231853 53231968 -174292610 - L2 LINE L2 -42 3271 3148 454 236 33 82 chr3 53232791 53232973 -174291605 - MER69A DNA AcHobo 0 177 5 268 263 53 11 chr3 53234014 53234109 -174290469 - MIR3 SINE MIR -42 166 68 210 189 27 0 chr3 53234212 53234249 -174290329 - MER91C DNA MER1_type -61 79 42 234 174 0 0 chr3 53234428 53234474 -174290104 + A-rich Low_complexity Low_complexity 1 46 0 355 215 15 0 chr3 53235290 53235355 -174289223 + L2 LINE L2 3248 3313 0 198 222 37 111 chr3 53235909 53235990 -174288588 - MIR3 SINE MIR -21 187 113 392 250 19 10 chr3 53236199 53236303 -174288275 + L1MD3 LINE L1 7632 7736 -259 588 194 0 50 chr3 53236313 53236452 -174288126 + L1MD3 LINE L1 7864 7995 0 514 250 73 0 chr3 53236477 53236601 -174287977 + MLT1G1 LTR MaLR 1 133 -462 403 200 154 0 chr3 53236601 53236711 -174287867 + MIR SINE MIR 100 226 -36 269 328 23 16 chr3 53237668 53237796 -174286782 + MLT1K LTR MaLR 157 285 -303 1147 226 70 53 chr3 53237804 53238167 -174286411 + MLT1G LTR MaLR 1 356 -234 1839 175 5 66 chr3 53238167 53238562 -174286016 + MLT1A2 LTR MaLR 4 374 0 1147 226 70 53 chr3 53238562 53238695 -174285883 + MLT1G LTR MaLR 356 562 -28 1574 192 51 53 chr3 53238695 53239070 -174285508 - MLT1A2 LTR MaLR 0 374 1 1147 226 70 53 chr3 53239070 53239100 -174285478 + MLT1G LTR MaLR 562 590 0 482 227 98 93 chr3 53239131 53239356 -174285222 + MLT1K LTR MaLR 322 547 -41 722 306 47 19 chr3 53239485 53239940 -174284638 + MLT1L LTR MaLR 1 542 -73 325 316 51 0 chr3 53239986 53240103 -174284475 - MIR3 SINE MIR -34 174 52 2364 75 0 3 chr3 53240220 53240528 -174284050 - AluY SINE Alu -4 307 1 202 205 0 0 chr3 53241087 53241126 -174283452 + (CA)n Simple_repeat Simple_repeat 1 39 0 2159 105 14 0 chr3 53241577 53241872 -174282706 - AluSq SINE Alu -14 299 1 345 24 0 0 chr3 53241988 53242030 -174282548 + (TG)n Simple_repeat Simple_repeat 2 43 0 1157 183 97 14 chr3 53242130 53242420 -174282158 - MER33 DNA MER1_type -10 314 1 289 320 96 8 chr3 53242426 53242551 -174282027 + MIR SINE MIR 41 176 -86 430 288 81 30 chr3 53242617 53242815 -174281763 - MER63A DNA MER1_type 0 210 3 2139 109 3 3 chr3 53243175 53243478 -174281100 + AluSg SINE Alu 1 303 -7 184 214 143 71 chr3 53244138 53244236 -174280342 + L3 LINE CR1 591 695 -882 289 245 20 10 chr3 53244280 53244382 -174280196 - L1ME4a LINE L1 -67 6054 5952 335 298 16 16 chr3 53244404 53244525 -174280053 - LTR16C LTR ERVL 0 491 371 324 256 100 56 chr3 53244907 53245067 -174279511 - L1ME4a LINE L1 -213 5908 5742 433 246 112 15 chr3 53245400 53245534 -174279044 - L2 LINE L2 -2 3311 3165 1654 232 173 17 chr3 53245612 53246081 -174278497 - MLT1F LTR MaLR 0 542 1 186 349 15 0 chr3 53246092 53246158 -174278420 - L2 LINE L2 -4 3268 3202 202 220 220 0 chr3 53246196 53246255 -174278323 + L2 LINE L2 3230 3301 -12 185 128 26 26 chr3 53246220 53246259 -174278319 + MIR SINE MIR 221 259 -3 * 289 261 0 0 chr3 53246270 53246335 -174278243 + MIR SINE MIR 3 67 -195 299 216 0 0 chr3 53246372 53246423 -174278155 + LTR67 LTR ERVL 507 557 0 1697 165 62 135 chr3 53246428 53246931 -174277647 - L1MC4a LINE L1 -187 7621 7156 558 214 0 0 chr3 53246931 53247029 -174277549 - MLT1F1 LTR MaLR -161 406 309 191 206 0 0 chr3 53247085 53247119 -174277459 + L2 LINE L2 3230 3263 -50 1289 164 53 11 chr3 53247145 53247426 -174277152 - L1MC4a LINE L1 -656 7152 6860 1262 219 112 0 chr3 53247463 53247732 -174276846 + AluJo SINE Alu 2 300 -2 343 195 13 13 chr3 53247770 53247847 -174276731 + L1MD3 LINE L1 7904 7980 -15 1601 169 70 0 chr3 53247897 53248170 -174276408 + AluJo SINE Alu 1 292 -20 445 208 69 0 chr3 53249317 53249418 -174275160 - MIR SINE MIR -108 154 47 827 201 89 0 chr3 53249471 53249640 -174274938 - MER5A DNA MER1_type 0 189 6 470 214 77 0 chr3 53249977 53250094 -174274484 - MLT1H1 LTR MaLR -45 510 385 357 285 86 32 chr3 53250137 53250323 -174274255 - MLT1H1 LTR MaLR -348 207 12 11483 170 25 71 chr3 53250339 53251024 -174273554 - L1PA16 LINE L1 -7 6159 5444 2172 133 3 3 chr3 53251024 53251333 -174273245 - AluSx SINE Alu -3 309 1 11483 170 25 71 chr3 53251333 53251661 -174272917 - L1PA16 LINE L1 -722 5444 5102 1993 129 35 0 chr3 53251661 53251947 -174272631 - AluJb SINE Alu -16 296 1 11483 170 25 71 chr3 53251947 53252084 -174272494 - L1PA16 LINE L1 -1064 5102 4960 2206 127 3 3 chr3 53252084 53252392 -174272186 - AluSx SINE Alu -4 308 1 11483 170 25 71 chr3 53252392 53253814 -174270764 - L1PA16 LINE L1 -1206 4960 3474 2239 104 3 7 chr3 53253814 53254113 -174270465 - AluSq SINE Alu -15 298 1 11483 170 25 71 chr3 53254113 53254486 -174270092 - L1PA16 LINE L1 -2692 3474 3085 833 184 0 0 chr3 53254486 53254611 -174269967 - AluSq/x SINE Alu -187 125 1 11483 170 25 71 chr3 53254611 53254914 -174269664 - L1PA16 LINE L1 -3081 3085 2985 1632 122 142 4 chr3 53254914 53255168 -174269410 - AluSx SINE Alu -23 289 1 11483 170 25 71 chr3 53255168 53255640 -174268938 - L1PA16 LINE L1 -3181 2985 2493 202 204 60 180 chr3 53255802 53256086 -174268492 + L2 LINE L2 3019 3268 -4 279 114 0 0 chr3 53256406 53256450 -174268128 + (TTCC)n Simple_repeat Simple_repeat 3 46 0 359 236 0 22 chr3 53256633 53256722 -174267856 + MER5A DNA MER1_type 9 95 -94 373 315 48 7 chr3 53257002 53257148 -174267430 - MIR SINE MIR -15 247 96 253 286 10 14 chr3 53257422 53257632 -174266946 + CT-rich Low_complexity Low_complexity 1 209 0 1053 221 20 20 chr3 53259581 53259830 -174264748 + MIR SINE MIR 12 260 -2 477 308 72 13 chr3 53260199 53260436 -174264142 - MIR SINE MIR -6 256 6 1912 169 0 7 chr3 53260586 53260887 -174263691 - AluSx SINE Alu -13 299 1 424 253 178 13 chr3 53260955 53261180 -174263398 - MIR SINE MIR 0 262 1 868 190 11 39 chr3 53261217 53261396 -174263182 + MER82 DNA MER2_type 1 174 -479 1889 212 25 0 chr3 53261413 53261772 -174262806 + MER82 DNA MER2_type 277 644 -9 14710 158 34 21 chr3 53261812 53263846 -174260732 + L1M1 LINE L1 15 2022 -5543 2494 78 3 0 chr3 53263846 53264153 -174260425 + AluY SINE Alu 1 308 -3 14710 158 34 21 chr3 53264153 53264328 -174260250 + L1M1 LINE L1 2022 2193 -5372 1974 146 0 24 chr3 53264328 53264622 -174259956 + AluSx SINE Alu 1 287 -25 14710 158 34 21 chr3 53264622 53264950 -174259628 + L1M1 LINE L1 2193 2585 -4980 502 240 85 0 chr3 53264936 53265065 -174259513 + L1M1 LINE L1 3845 3984 -3581 * 2899 92 70 13 chr3 53265057 53265578 -174259000 + L1M1 LINE L1 5163 5715 -589 2237 112 7 0 chr3 53266063 53266366 -174258212 + AluSp SINE Alu 2 306 -7 332 77 19 0 chr3 53266871 53266923 -174257655 + (GA)n Simple_repeat Simple_repeat 2 54 0 4925 56 3 0 chr3 53267267 53267856 -174256722 + LTR10C LTR ERV1 1 591 0 27 73 0 0 chr3 53267928 53267983 -174256595 + AT_rich Low_complexity Low_complexity 1 55 0 15325 187 23 23 chr3 53267983 53268172 -174256406 - L1PB1 LINE L1 -2 6865 6677 2577 47 3 3 chr3 53268172 53268473 -174256105 - AluY SINE Alu -10 301 1 15325 187 23 23 chr3 53268473 53269935 -174254643 - L1PB1 LINE L1 -190 6677 5216 3938 90 0 4 chr3 53269935 53270448 -174254130 - MER9 LTR ERVK 0 511 1 15325 187 23 23 chr3 53270448 53270737 -174253841 - L1PB1 LINE L1 -1651 5216 4928 2054 128 0 7 chr3 53270737 53271073 -174253505 - AluSg SINE Alu 0 334 1 15325 187 23 23 chr3 53271073 53273127 -174251451 - L1PB1 LINE L1 -1939 4928 2835 2310 125 0 0 chr3 53273127 53273439 -174251139 - AluSx SINE Alu 0 312 1 15325 187 23 23 chr3 53273439 53274964 -174249614 - L1PB1 LINE L1 -4032 2835 1311 4311 216 89 4 chr3 53274970 53276031 -174248547 - L1PB1 LINE L1 -5706 1157 6 194 330 19 0 chr3 53276157 53276260 -174248318 + L2 LINE L2 1575 1679 -1635 1775 172 10 16 chr3 53276278 53276586 -174247992 - AluJo SINE Alu -4 308 3 759 203 131 34 chr3 53276621 53276858 -174247720 + L1MC4a LINE L1 7354 7613 -195 270 221 60 121 chr3 53276830 53276866 -174247712 + L1M4 LINE L1 3963 4000 -2146 * 1468 220 141 39 chr3 53276866 53277356 -174247222 - MLT1F LTR MaLR -2 540 1 270 221 60 121 chr3 53277356 53277468 -174247110 + L1M4 LINE L1 4000 4102 -2044 2278 155 26 83 chr3 53277837 53278015 -174246563 - MLT1D LTR MaLR 0 505 318 2223 123 10 0 chr3 53278015 53278325 -174246253 - AluSq SINE Alu 0 313 1 2278 155 26 83 chr3 53278325 53278336 -174246242 - MLT1D LTR MaLR -187 318 308 3103 146 27 12 chr3 53278336 53278897 -174245681 - L1MB3 LINE L1 0 6183 5615 2278 155 26 83 chr3 53278897 53279234 -174245344 - MLT1D LTR MaLR -197 308 8 346 294 89 7 chr3 53279817 53279963 -174244615 + MIR3 SINE MIR 36 193 -15 428 250 118 11 chr3 53279973 53280133 -174244445 + MIR3 SINE MIR 20 197 -11 466 231 224 0 chr3 53280133 53280280 -174244298 - MER5A DNA MER1_type 0 189 10 2153 117 3 0 chr3 53280479 53280783 -174243795 + AluSx SINE Alu 1 305 0 2442 166 72 32 chr3 53280800 53281329 -174243249 + MER44D DNA MER2_type 1 605 0 408 248 75 25 chr3 53281363 53281524 -174243054 + LTR37B LTR ERV1 197 365 -103 28 48 0 0 chr3 53282053 53282095 -174242483 + GC_rich Low_complexity Low_complexity 1 42 0 498 208 21 10 chr3 53283540 53283636 -174240942 + MER68 LTR ERV1 463 559 -3 404 223 179 69 chr3 53283637 53283911 -174240667 - L1ME LINE L1 -500 5621 5318 2466 81 0 0 chr3 53283912 53284221 -174240357 - AluY SINE Alu -2 309 1 2255 52 44 0 chr3 53284234 53284549 -174240029 - AluY SINE Alu 0 327 1 2113 91 14 14 chr3 53284815 53285112 -174239466 + AluSg SINE Alu 3 299 -11 32 26 0 0 chr3 53285142 53285181 -174239397 + AT_rich Low_complexity Low_complexity 1 39 0 2054 131 30 7 chr3 53285899 53286204 -174238374 - AluSx SINE Alu 0 312 1 383 206 14 110 chr3 53286841 53286904 -174237674 + L2 LINE L2 3168 3211 -102 2321 123 0 0 chr3 53286904 53287212 -174237366 + AluSg SINE Alu 1 308 -2 383 206 14 110 chr3 53287212 53287294 -174237284 + L2 LINE L2 3211 3299 -14 862 182 0 0 chr3 53287294 53287462 -174237116 + FRAM SINE Alu 8 175 0 453 281 101 28 chr3 53288324 53288502 -174236076 + MIR SINE MIR 4 194 -68 219 292 99 30 chr3 53289857 53290041 -174234537 + MIR SINE MIR 7 210 -52 685 204 133 31 chr3 53290246 53290472 -174234106 - MIR SINE MIR 0 262 14 423 259 59 7 chr3 53290494 53290629 -174233949 - MIR3 SINE MIR -61 147 6 261 0 0 0 chr3 53293076 53293105 -174231473 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 867 117 0 7 chr3 53293109 53293246 -174231332 + MER41A LTR ERV1 413 548 -6 2210 107 28 3 chr3 53293252 53293579 -174230999 - L1PB1 LINE L1 -1 6150 5816 2404 74 7 0 chr3 53294422 53294719 -174229859 - AluY SINE Alu -11 300 2 1959 155 0 3 chr3 53294841 53295125 -174229453 + AluJb SINE Alu 13 295 -17 1777 165 21 7 chr3 53295240 53295525 -174229053 - AluJb SINE Alu -23 289 1 783 258 29 29 chr3 53295637 53295881 -174228697 + MIR SINE MIR 16 259 -3 867 218 39 19 chr3 53295883 53296089 -174228489 - MER63A DNA MER1_type 0 210 1 2482 87 3 0 chr3 53296433 53296745 -174227833 + AluSp SINE Alu 1 313 0 1996 94 4 0 chr3 53296924 53297179 -174227399 - AluSq SINE Alu -11 302 47 485 284 149 5 chr3 53297416 53297610 -174226968 + MIR SINE MIR 29 250 -12 1633 99 43 0 chr3 53298285 53298496 -174226082 - AluSx SINE Alu -92 220 1 927 147 0 22 chr3 53298727 53298863 -174225715 - FLAM_C SINE Alu 0 133 1 1047 249 160 25 chr3 53299292 53299649 -174224929 - MLT1I LTR MaLR -3 406 2 229 304 216 8 chr3 53299866 53299991 -174224587 - MER5A DNA MER1_type -3 186 36 * 238 269 0 0 chr3 53299941 53299993 -174224585 + MER5A DNA MER1_type 116 167 -22 24 0 0 0 chr3 53301565 53301589 -174222989 + AT_rich Low_complexity Low_complexity 1 24 0 398 317 109 13 chr3 53302067 53302420 -174222158 + LTR33A LTR ERVL 8 422 -101 192 40 0 0 chr3 53302800 53302825 -174221753 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 349 228 52 121 chr3 53304056 53304288 -174220290 - MLT1K LTR MaLR 0 588 373 2490 196 32 16 chr3 53304688 53305189 -174219389 - LTR22 LTR ERVK 0 509 1 4223 123 25 12 chr3 53305300 53305948 -174218630 - L1PA13 LINE L1 0 6163 5508 315 340 97 16 chr3 53306989 53307174 -174217404 - MIR SINE MIR -12 250 51 767 273 10 5 chr3 53307584 53307793 -174216785 + L1ME LINE L1 5533 5742 -379 22 35 0 0 chr3 53307873 53307902 -174216676 + AT_rich Low_complexity Low_complexity 1 29 0 688 218 47 29 chr3 53308198 53308368 -174216210 + FRAM SINE Alu 1 173 -3 188 274 20 69 chr3 53308776 53308878 -174215700 + MIR3 SINE MIR 104 200 -8 665 185 62 14 chr3 53308950 53309096 -174215482 - MIR SINE MIR -2 260 108 2284 108 0 0 chr3 53309175 53309471 -174215107 + AluSx SINE Alu 1 296 -16 411 21 0 0 chr3 53309486 53309534 -174215044 + (GA)n Simple_repeat Simple_repeat 2 49 0 773 176 30 15 chr3 53309751 53309882 -174214696 + FLAM_A SINE Alu 1 133 0 1075 211 5 5 chr3 53310173 53310382 -174214196 + MER3 DNA MER1_type 1 209 0 2431 85 0 0 chr3 53310402 53310708 -174213870 + AluY SINE Alu 1 306 -5 1210 209 37 0 chr3 53312143 53312358 -174212220 + MER58A DNA MER1_type 1 223 -1 748 268 30 43 chr3 53312368 53312599 -174211979 + MIR SINE MIR 11 238 -24 372 233 89 4 chr3 53314534 53314776 -174209802 - L1ME4a LINE L1 -121 6000 5712 869 212 237 7 chr3 53314777 53315051 -174209527 + MER46C DNA MER2_type 1 337 -1 270 280 65 19 chr3 53315100 53315207 -174209371 - MIR SINE MIR -15 247 136 1668 173 187 41 chr3 53315301 53315665 -174208913 - MER47B DNA MER2_type 0 418 2 284 200 245 0 chr3 53315666 53315776 -174208802 - L1ME4a LINE L1 -446 5675 5539 242 232 26 53 chr3 53315789 53315940 -174208638 - L1P5 LINE L1 -720 5431 5285 1524 149 8 8 chr3 53316923 53317178 -174207400 - AluSx SINE Alu -13 299 45 688 196 17 113 chr3 53317545 53317775 -174206803 - L1MD2 LINE L1 -17 6342 6135 185 152 22 0 chr3 53317775 53317783 -174206795 + (TAG)n Simple_repeat Simple_repeat 2 8 -40 1449 145 189 44 chr3 53317783 53318100 -174206478 - MER47A DNA MER2_type -1 365 3 185 152 22 0 chr3 53318100 53318137 -174206441 + (TAG)n Simple_repeat Simple_repeat 8 48 0 350 140 0 0 chr3 53318137 53318187 -174206391 - L1MD2 LINE L1 -226 6133 6084 264 59 0 0 chr3 53319507 53319541 -174205037 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 591 155 29 0 chr3 53320908 53321011 -174203567 - MER5A DNA MER1_type 0 189 84 337 258 34 97 chr3 53321194 53321410 -174203168 - L1ME3 LINE L1 -4 6166 5955 2329 107 3 0 chr3 53321420 53321730 -174202848 - AluSq SINE Alu -2 311 1 574 146 15 95 chr3 53321798 53321849 -174202729 - L1MB3 LINE L1 -1 6182 6128 2500 72 0 7 chr3 53321849 53322154 -174202424 - AluY SINE Alu -8 303 1 574 146 15 95 chr3 53322154 53322239 -174202339 - L1MB3 LINE L1 -55 6128 6057 255 227 61 0 chr3 53322260 53322326 -174202252 - L1ME3 LINE L1 -223 5939 5870 873 262 33 50 chr3 53322341 53322700 -174201878 - L1MC4 LINE L1 0 8042 7690 2822 179 113 23 chr3 53322725 53323299 -174201279 - MLT1E2 LTR MaLR 0 626 1 1943 165 0 0 chr3 53323308 53323611 -174200967 - AluJb SINE Alu -9 303 1 1155 162 154 38 chr3 53323616 53323882 -174200696 - AluY SINE Alu 0 301 5 592 217 46 107 chr3 53324370 53324651 -174199927 + L2 LINE L2 3050 3313 0 334 239 159 0 chr3 53324650 53324738 -174199840 - MIR SINE MIR -116 146 45 * 2840 10 3 0 chr3 53325599 53325908 -174198670 - AluYb8 SINE Alu -8 310 1 9150 188 56 100 chr3 53326507 53329377 -174195201 + L1MDa LINE L1 20 2763 -3777 320 220 90 0 chr3 53329455 53329555 -174195023 + L1MDa LINE L1 2734 2842 -3698 * 4030 182 38 6 chr3 53329554 53331118 -174193460 - L1M4 LINE L1 -2912 3470 1851 1893 176 18 76 chr3 53331118 53331515 -174193063 - MLT1A2 LTR MaLR 0 374 1 2421 66 0 3 chr3 53331536 53331837 -174192741 + AluY SINE Alu 1 300 -11 2475 59 0 13 chr3 53331841 53332148 -174192430 + AluY SINE Alu 1 303 -8 2200 109 3 7 chr3 53332149 53332451 -174192127 + AluY SINE Alu 1 301 -10 3112 92 12 46 chr3 53332452 53332621 -174191957 + L1M1 LINE L1 2105 2278 -5287 1942 150 0 24 chr3 53332621 53332915 -174191663 + AluSx SINE Alu 1 287 -25 3112 92 12 46 chr3 53332915 53333243 -174191335 + L1M1 LINE L1 2278 2585 -4980 504 240 85 0 chr3 53333229 53333358 -174191220 + L1MDa LINE L1 2820 2959 -3581 * 2922 92 70 13 chr3 53333350 53333871 -174190707 + L1M1 LINE L1 5163 5715 -589 2226 112 7 0 chr3 53334356 53334659 -174189919 + AluSp SINE Alu 2 306 -7 332 77 19 0 chr3 53335164 53335216 -174189362 + (GA)n Simple_repeat Simple_repeat 2 54 0 5126 58 3 0 chr3 53335560 53336149 -174188429 + LTR10C LTR ERV1 1 591 0 28 71 0 0 chr3 53336220 53336276 -174188302 + AT_rich Low_complexity Low_complexity 1 56 0 15436 188 23 23 chr3 53336276 53336465 -174188113 - L1PB1 LINE L1 -2 6865 6677 2624 43 3 0 chr3 53336465 53336766 -174187812 - AluY SINE Alu -9 302 1 15436 188 23 23 chr3 53336766 53338228 -174186350 - L1PB1 LINE L1 -190 6677 5216 4150 88 0 4 chr3 53338228 53338741 -174185837 - MER9 LTR ERVK 0 511 1 15436 188 23 23 chr3 53338741 53339030 -174185548 - L1PB1 LINE L1 -1651 5216 4928 2031 128 0 7 chr3 53339030 53339366 -174185212 - AluSg SINE Alu 0 334 1 15436 188 23 23 chr3 53339366 53341420 -174183158 - L1PB1 LINE L1 -1939 4928 2835 2291 125 0 0 chr3 53341420 53341732 -174182846 - AluSx SINE Alu 0 312 1 15436 188 23 23 chr3 53341732 53343257 -174181321 - L1PB1 LINE L1 -4032 2835 1311 4130 220 89 5 chr3 53343263 53344325 -174180253 - L1PB1 LINE L1 -5706 1157 6 218 330 19 0 chr3 53344451 53344554 -174180024 + L2 LINE L2 1575 1679 -1635 1762 172 10 16 chr3 53344572 53344880 -174179698 - AluJo SINE Alu -4 308 3 761 203 131 34 chr3 53344915 53345152 -174179426 + L1MC4a LINE L1 7354 7613 -195 275 221 60 121 chr3 53345124 53345160 -174179418 + L1M4 LINE L1 3963 4000 -2146 * 1648 218 141 39 chr3 53345160 53345650 -174178928 - MLT1F LTR MaLR -2 540 1 275 221 60 121 chr3 53345650 53345762 -174178816 + L1M4 LINE L1 4000 4102 -2044 2290 155 26 83 chr3 53346131 53346309 -174178269 - MLT1D LTR MaLR 0 505 318 2206 123 10 0 chr3 53346309 53346618 -174177960 - AluSq SINE Alu -1 312 1 2290 155 26 83 chr3 53346618 53346629 -174177949 - MLT1D LTR MaLR -187 318 308 3294 148 25 11 chr3 53346629 53347190 -174177388 - L1MB3 LINE L1 0 6183 5615 2290 155 26 83 chr3 53347190 53347527 -174177051 - MLT1D LTR MaLR -197 308 8 372 301 89 7 chr3 53348109 53348255 -174176323 + MIR3 SINE MIR 36 193 -15 475 250 118 11 chr3 53348265 53348425 -174176153 + MIR3 SINE MIR 20 197 -11 516 231 224 0 chr3 53348425 53348572 -174176006 - MER5A DNA MER1_type 0 189 10 2127 117 3 0 chr3 53348771 53349075 -174175503 + AluSx SINE Alu 1 305 0 2615 161 79 40 chr3 53349092 53349621 -174174957 + MER44D DNA MER2_type 1 605 0 417 248 75 25 chr3 53349655 53349816 -174174762 + LTR37B LTR ERV1 197 365 -103 28 48 0 0 chr3 53350345 53350387 -174174191 + GC_rich Low_complexity Low_complexity 1 42 0 498 208 21 10 chr3 53351832 53351928 -174172650 + MER68 LTR ERV1 463 559 -3 404 223 179 69 chr3 53351929 53352203 -174172375 - L1ME LINE L1 -500 5621 5318 2253 80 30 0 chr3 53352204 53352504 -174172074 - AluY SINE Alu -2 309 1 2242 55 44 0 chr3 53352517 53352832 -174171746 - AluY SINE Alu 0 327 1 2113 91 14 14 chr3 53353098 53353395 -174171183 + AluSg SINE Alu 3 299 -11 32 26 0 0 chr3 53353425 53353464 -174171114 + AT_rich Low_complexity Low_complexity 1 39 0 2054 131 30 7 chr3 53354182 53354487 -174170091 - AluSx SINE Alu 0 312 1 422 210 14 91 chr3 53355124 53355184 -174169394 + L2 LINE L2 3168 3231 -82 2321 123 0 0 chr3 53355184 53355492 -174169086 + AluSg SINE Alu 1 308 -2 422 210 14 91 chr3 53355492 53355574 -174169004 + L2 LINE L2 3231 3299 -14 862 182 0 0 chr3 53355574 53355742 -174168836 + FRAM SINE Alu 8 175 0 453 281 101 28 chr3 53356604 53356782 -174167796 + MIR SINE MIR 4 194 -68 219 292 99 30 chr3 53358137 53358321 -174166257 + MIR SINE MIR 7 210 -52 672 208 133 31 chr3 53358526 53358752 -174165826 - MIR SINE MIR 0 262 14 423 259 59 7 chr3 53358774 53358909 -174165669 - MIR3 SINE MIR -61 147 6 261 0 0 0 chr3 53361356 53361385 -174163193 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 867 117 0 7 chr3 53361389 53361526 -174163052 + MER41A LTR ERV1 413 548 -6 2210 107 28 3 chr3 53361532 53361859 -174162719 - L1PB1 LINE L1 -1 6150 5816 2265 64 17 3 chr3 53362702 53362998 -174161580 - AluY SINE Alu -11 300 1 1087 203 85 8 chr3 53362998 53363244 -174161334 - L1M1 LINE L1 -5453 2112 1848 2384 87 3 3 chr3 53363899 53364208 -174160370 - AluSg SINE Alu -1 309 1 371 205 90 0 chr3 53364645 53364723 -174159855 + MER5B DNA MER1_type 94 178 0 2321 103 3 0 chr3 53365713 53366014 -174158564 - AluSx SINE Alu -10 302 1 1005 159 13 70 chr3 53367591 53367818 -174156760 - MER20 DNA MER1_type 0 219 6 195 163 163 102 chr3 53369159 53369257 -174155321 - L2 LINE L2 0 3313 3210 947 159 0 19 chr3 53369901 53370058 -174154520 + FRAM SINE Alu 5 158 -18 200 258 54 43 chr3 53371213 53371306 -174153272 + MIR SINE MIR 54 147 -115 709 201 31 0 chr3 53371327 53371476 -174153102 + MSTC LTR MaLR 1 153 -243 327 25 0 0 chr3 53372047 53372087 -174152491 + (GA)n Simple_repeat Simple_repeat 2 41 0 261 289 0 13 chr3 53376112 53376188 -174148390 - Charlie4 DNA MER1_type -4 1957 1883 231 122 0 49 chr3 53376735 53376776 -174147802 + Alu SINE Alu 101 139 -163 2084 143 16 104 chr3 53377070 53377100 -174147478 - MSTD LTR MaLR 0 396 365 3686 105 2 12 chr3 53377100 53377616 -174146962 - MER9 LTR ERVK 0 511 1 2084 143 16 104 chr3 53377616 53377819 -174146759 - MSTD LTR MaLR -31 365 216 2385 92 3 0 chr3 53377819 53378114 -174146464 - AluSp SINE Alu -7 306 11 2084 143 16 104 chr3 53378114 53378313 -174146265 - MSTD LTR MaLR -180 216 1 12270 139 43 18 chr3 53378775 53381907 -174142671 - L1MA4 LINE L1 -4 6296 3072 4290 141 29 19 chr3 53384184 53384942 -174139636 + L1MA7 LINE L1 5522 6287 -4 2304 108 0 0 chr3 53384963 53385260 -174139318 + AluSx SINE Alu 1 297 -15 1367 103 8 23 chr3 53385594 53385808 -174138770 + pTR5 LTR ERV1 1629 2077 -361 720 269 87 11 chr3 53386550 53386974 -174137604 - LTR33 LTR ERVL -8 513 1 2211 117 3 10 chr3 53387008 53387315 -174137263 + AluSq SINE Alu 1 305 -8 634 244 29 12 chr3 53387530 53387702 -174136876 + L1ME3 LINE L1 5950 6124 -38 2051 122 14 0 chr3 53388022 53388310 -174136268 + AluSg SINE Alu 1 292 -18 366 225 0 0 chr3 53389093 53389164 -174135414 + MIR3 SINE MIR 115 185 -23 22 0 0 0 chr3 53390474 53390496 -174134082 + AT_rich Low_complexity Low_complexity 1 22 0 687 223 46 74 chr3 53390520 53390887 -174133691 + L1ME LINE L1 545 901 -5169 833 343 98 5 chr3 53390965 53391402 -174133176 - L2 LINE L2 -359 2955 2478 369 274 113 80 chr3 53391682 53391912 -174132666 - MLT1J LTR MaLR 0 511 261 835 152 15 8 chr3 53391912 53392044 -174132534 + FLAM_C SINE Alu 1 133 0 369 274 113 80 chr3 53392044 53392211 -174132367 - MLT1J LTR MaLR -250 261 101 311 261 0 27 chr3 53393094 53393205 -174131373 - MIR SINE MIR -55 207 100 291 311 117 0 chr3 53393303 53393406 -174131172 - L2 LINE L2 -21 3292 3178 1555 103 0 0 chr3 53396313 53396517 -174128061 - AluSg/x SINE Alu -8 304 101 341 274 80 0 chr3 53397171 53397284 -174127294 - MER104 DNA Tc2 -53 127 6 1782 133 20 47 chr3 53397410 53397710 -174126868 + AluJb SINE Alu 2 293 -19 2322 99 0 0 chr3 53398942 53399244 -174125334 - AluSg SINE Alu -8 302 1 219 293 75 60 chr3 53400217 53400350 -174124228 + MIR3 SINE MIR 38 172 -36 258 32 0 0 chr3 53400641 53400672 -174123906 + (A)n Simple_repeat Simple_repeat 1 31 0 370 286 54 64 chr3 53401602 53401805 -174122773 - LTR67 LTR ERVL -2 555 355 362 281 35 26 chr3 53401984 53402098 -174122480 + MIR SINE MIR 37 151 -57 2338 104 3 0 chr3 53402882 53403191 -174121387 - AluSx SINE Alu -2 310 1 25 31 0 0 chr3 53403283 53403315 -174121263 + AT_rich Low_complexity Low_complexity 1 32 0 1099 155 94 40 chr3 53403965 53404242 -174120336 - MER33 DNA MER1_type -32 292 1 278 276 0 13 chr3 53404302 53404378 -174120200 + Charlie4 DNA MER1_type 1883 1957 -4 494 230 44 7 chr3 53409693 53409828 -174114750 + MER103 DNA DNA 26 165 -1 3946 154 81 51 chr3 53410406 53411569 -174113009 - L1MB8 LINE L1 -31 6147 4934 373 306 47 29 chr3 53411643 53411918 -174112660 - L1ME4a LINE L1 -241 5880 5601 628 220 165 34 chr3 53412427 53412663 -174111915 - MLT1J LTR MaLR -243 268 2 229 286 0 0 chr3 53412716 53412772 -174111806 - HAL1 LINE L1 -179 2328 2273 2261 130 0 0 chr3 53412872 53413173 -174111405 + AluSx SINE Alu 1 301 -11 1120 185 0 39 chr3 53413422 53413627 -174110951 + AluJo SINE Alu 1 197 -115 38 39 0 0 chr3 53413645 53413697 -174110881 + AT_rich Low_complexity Low_complexity 1 52 0 683 222 0 22 chr3 53413990 53414125 -174110453 + FLAM_C SINE Alu 2 133 0 219 224 41 20 chr3 53414136 53414234 -174110344 + (TATAA)n Simple_repeat Simple_repeat 4 103 0 1379 246 62 49 chr3 53414239 53414767 -174109811 - HAL1 LINE L1 -342 2165 1631 180 0 0 0 chr3 53416345 53416365 -174108213 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 21 57 0 0 chr3 53417279 53417314 -174107264 + AT_rich Low_complexity Low_complexity 1 35 0 553 118 47 0 chr3 53417705 53417790 -174106788 + MLT1A2 LTR MaLR 1 89 -285 6426 105 17 38 chr3 53417891 53418895 -174105683 - L1P LINE L1 -4575 1571 589 406 261 30 64 chr3 53419620 53419823 -174104755 - LTR33 LTR ERVL -22 499 304 336 241 78 85 chr3 53419826 53419967 -174104611 + MER5C DNA MER1_type 21 160 -164 1127 148 22 0 chr3 53419977 53420159 -174104419 - AluSg/x SINE Alu -4 308 123 435 191 32 56 chr3 53420160 53420286 -174104292 + MER5C DNA MER1_type 198 320 -4 316 200 0 0 chr3 53420434 53420494 -174104084 - LTR33 LTR ERVL -431 90 31 457 177 282 0 chr3 53420988 53421112 -174103466 - MIR SINE MIR -25 237 79 857 237 109 5 chr3 53421684 53421895 -174102683 - MIR SINE MIR -29 233 1 2500 73 0 0 chr3 53422456 53422759 -174101819 + AluY SINE Alu 1 303 -8 885 147 237 0 chr3 53423588 53423765 -174100813 + MER20 DNA MER1_type 1 219 0 2245 119 3 0 chr3 53424170 53424473 -174100105 + AluSx SINE Alu 1 304 -8 186 231 0 0 chr3 53425288 53425327 -174099251 + MER5A DNA MER1_type 12 50 -139 713 182 17 72 chr3 53425409 53425590 -174098988 - MER5B DNA MER1_type -7 171 1 325 336 60 0 chr3 53426353 53426469 -174098109 + L2 LINE L2 3147 3269 -3 1380 153 121 16 chr3 53426856 53427105 -174097473 - ORSL DNA AcHobo 0 275 1 463 257 124 23 chr3 53428277 53428479 -174096099 + MIR SINE MIR 30 249 -13 251 238 0 129 chr3 53428751 53428810 -174095768 + MER5B DNA MER1_type 91 133 -45 2385 68 0 0 chr3 53428810 53429103 -174095475 - AluY SINE Alu -18 293 1 251 238 0 129 chr3 53429103 53429144 -174095434 + MER5B DNA MER1_type 133 178 0 522 300 68 32 chr3 53429166 53429386 -174095192 + MIR SINE MIR 8 235 -27 2249 113 0 0 chr3 53430490 53430782 -174093796 + AluSx SINE Alu 1 292 -20 747 250 94 0 chr3 53430955 53431147 -174093431 + MER63A DNA MER1_type 1 210 0 2324 97 0 3 chr3 53431564 53431863 -174092715 - AluSc SINE Alu -11 298 1 1108 285 37 23 chr3 53432110 53432545 -174092033 - LTR16B LTR ERVL -2 462 22 444 315 137 15 chr3 53432651 53432994 -174091584 + HAL1 LINE L1 2112 2496 -11 2279 117 0 0 chr3 53433330 53433637 -174090941 + AluSx SINE Alu 2 308 -4 23 54 0 0 chr3 53434671 53434708 -174089870 + AT_rich Low_complexity Low_complexity 1 37 0 1561 167 3 55 chr3 53434720 53434864 -174089714 + AluJo SINE Alu 5 126 -186 2227 118 0 6 chr3 53434864 53435177 -174089401 + AluSx SINE Alu 1 311 -1 1561 167 3 55 chr3 53435177 53435343 -174089235 + AluJo SINE Alu 126 299 -13 1964 87 0 4 chr3 53435727 53435979 -174088599 - AluSq SINE Alu -62 251 1 1330 253 67 52 chr3 53437042 53437621 -174086957 - L1ME3A LINE L1 -202 5951 5363 1505 89 10 0 chr3 53437621 53437823 -174086755 - L1MA2 LINE L1 0 6304 6101 1330 253 67 52 chr3 53437823 53438108 -174086470 - L1ME3A LINE L1 -790 5363 5084 1313 107 0 0 chr3 53438219 53438388 -174086190 - AluSq SINE Alu -144 169 1 1066 261 88 46 chr3 53438388 53438955 -174085623 - L1ME3A LINE L1 -5089 1030 440 240 273 134 17 chr3 53439639 53439674 -174084904 - L1MB7 LINE L1 -225 5959 5925 637 268 125 17 chr3 53439674 53439969 -174084609 - L1MC4a LINE L1 -1898 5910 5584 193 29 59 0 chr3 53440424 53440458 -174084120 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 2260 118 0 9 chr3 53440475 53440790 -174083788 + AluSx SINE Alu 1 312 0 648 199 0 82 chr3 53440863 53441009 -174083569 + FLAM_A SINE Alu 8 141 -1 1716 170 7 20 chr3 53441081 53441375 -174083203 + AluJo SINE Alu 1 290 -22 280 324 144 0 chr3 53442320 53442459 -174082119 + MIR3 SINE MIR 36 194 -14 780 164 0 52 chr3 53442794 53442928 -174081650 + FLAM_C SINE Alu 3 129 -4 1314 242 89 37 chr3 53443001 53443484 -174081094 + L1ME4a LINE L1 5517 6024 -97 348 157 0 34 chr3 53444508 53444597 -174079981 + CT-rich Low_complexity Low_complexity 2 87 0 2032 140 0 3 chr3 53445808 53446100 -174078478 + AluJo SINE Alu 1 291 -21 185 286 0 18 chr3 53446237 53446293 -174078285 - L2 LINE L2 -256 3057 3003 447 184 69 0 chr3 53446537 53446624 -174077954 + L2 LINE L2 3161 3253 -19 455 268 120 34 chr3 53447036 53447245 -174077333 + L1ME3A LINE L1 5932 6158 -12 2084 112 13 3 chr3 53447449 53447752 -174076826 - AluSx SINE Alu -6 306 1 245 273 64 27 chr3 53448179 53448289 -174076289 + L1MC/D LINE L1 5766 5879 -1929 462 125 0 0 chr3 53448548 53448612 -174075966 + AluS SINE Alu 2 65 -244 2426 94 0 0 chr3 53449601 53449908 -174074670 + AluSx SINE Alu 1 307 -5 483 252 103 45 chr3 53450260 53450415 -174074163 + MER91A DNA MER1_type 1 164 -32 26 0 0 0 chr3 53451587 53451613 -174072965 + AT_rich Low_complexity Low_complexity 1 26 0 342 351 36 12 chr3 53452129 53452297 -174072281 - MER5A DNA MER1_type -10 179 8 349 271 129 53 chr3 53452799 53452969 -174071609 + MER5A DNA MER1_type 1 183 -6 550 298 78 21 chr3 53454152 53454343 -174070235 - MIR3 SINE MIR -5 203 2 1155 97 0 7 chr3 53454920 53455075 -174069503 + AluSc SINE Alu 6 159 -150 2021 117 10 3 chr3 53455176 53455466 -174069112 - AluSx SINE Alu -20 292 1 482 215 76 82 chr3 53455983 53456141 -174068437 - MIR3 SINE MIR -26 182 26 879 195 67 5 chr3 53456424 53456541 -174068037 + AluJb SINE Alu 1 136 -176 2230 92 0 3 chr3 53456541 53456846 -174067732 + AluY SINE Alu 1 304 -7 879 195 67 5 chr3 53456846 53456923 -174067655 + AluJb SINE Alu 136 207 -105 239 128 0 43 chr3 53456925 53456972 -174067606 + Alu SINE Alu 89 133 0 235 249 113 34 chr3 53457095 53457272 -174067306 + L1P5 LINE L1 5255 5445 -706 201 39 0 0 chr3 53457272 53457298 -174067280 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 1878 149 10 0 chr3 53457344 53457640 -174066938 + AluJo SINE Alu 1 299 -13 560 253 58 5 chr3 53457777 53457967 -174066611 + L1ME4a LINE L1 5696 5895 -226 1840 132 3 32 chr3 53457967 53458277 -174066301 + AluSx SINE Alu 1 301 -11 789 145 0 38 chr3 53458289 53458420 -174066158 + FLAM_C SINE Alu 2 127 -6 23 0 0 0 chr3 53458420 53458443 -174066135 + AT_rich Low_complexity Low_complexity 1 23 0 384 267 60 9 chr3 53458909 53459025 -174065553 + MIR SINE MIR 83 204 -58 1259 189 92 36 chr3 53459048 53459329 -174065249 - AluJo SINE Alu -15 297 1 2122 226 79 28 chr3 53462619 53462860 -174061718 - MER90 LTR ERV1 0 614 387 2432 60 0 0 chr3 53462860 53463158 -174061420 + AluY SINE Alu 2 299 -12 2122 226 79 28 chr3 53463158 53463486 -174061092 - MER90 LTR ERV1 -227 387 16 1950 151 0 0 chr3 53463571 53463875 -174060703 + AluJo SINE Alu 1 304 -8 1230 192 78 20 chr3 53463955 53464299 -174060279 - L1ME1 LINE L1 -15 6151 5788 1485 117 9 5 chr3 53464390 53464613 -174059965 - AluSg/x SINE Alu -17 293 70 186 43 0 0 chr3 53465147 53465170 -174059408 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1995 104 10 7 chr3 53465210 53465498 -174059080 + AluSc SINE Alu 1 289 -20 379 280 171 0 chr3 53465525 53465700 -174058878 - L1ME1 LINE L1 -375 5746 5542 415 331 39 55 chr3 53465732 53466043 -174058535 - L1ME1 LINE L1 -1376 4770 4465 1766 159 0 29 chr3 53466339 53466653 -174057925 - AluJo SINE Alu -7 305 1 1294 145 31 0 chr3 53466674 53466902 -174057676 - L1MA7 LINE L1 -9 6282 6048 24 0 0 0 chr3 53466908 53466932 -174057646 + AT_rich Low_complexity Low_complexity 1 24 0 306 330 86 40 chr3 53466984 53467460 -174057118 - L1ME1 LINE L1 -1897 4249 3752 2145 111 0 0 chr3 53467613 53467911 -174056667 - AluSx SINE Alu -14 298 1 2365 59 13 0 chr3 53468111 53468414 -174056164 - AluY SINE Alu -4 307 1 389 175 0 0 chr3 53468929 53468992 -174055586 - L2 LINE L2 0 3313 3251 2008 107 19 23 chr3 53470043 53470353 -174054225 + AluSx SINE Alu 4 312 0 1790 194 110 42 chr3 53470438 53470713 -174053865 + L1MD2 LINE L1 5835 6090 -269 366 23 0 0 chr3 53470713 53470756 -174053822 + (CA)n Simple_repeat Simple_repeat 2 44 0 1790 194 110 42 chr3 53470756 53470960 -174053618 + L1MD2 LINE L1 6090 6347 -12 1724 149 51 3 chr3 53471078 53471373 -174053205 - AluJb SINE Alu -3 309 1 261 109 0 0 chr3 53471989 53472035 -174052543 + (TG)n Simple_repeat Simple_repeat 1 46 0 255 221 150 21 chr3 53474238 53474313 -174050265 - L1ME4a LINE L1 -2 6119 6055 2184 122 0 0 chr3 53474313 53474616 -174049962 + AluSx SINE Alu 1 303 -9 255 221 150 21 chr3 53474616 53474680 -174049898 - L1ME4a LINE L1 -66 6055 5962 327 237 82 126 chr3 53474794 53474956 -174049622 + L1ME4a LINE L1 5864 6011 -110 2060 86 46 4 chr3 53474956 53475236 -174049342 + AluSx SINE Alu 1 292 -20 327 237 82 126 chr3 53475236 53475343 -174049235 + L1ME4a LINE L1 6011 6121 0 561 30 0 0 chr3 53475704 53475771 -174048807 + (TCTA)n Simple_repeat Simple_repeat 4 70 0 1633 141 16 0 chr3 53475771 53476027 -174048551 - AluJo SINE Alu -30 282 23 246 246 57 74 chr3 53477624 53477746 -174046832 - MIR SINE MIR -71 191 72 * 482 255 47 57 chr3 53477722 53477914 -174046664 - L2 LINE L2 -5 3308 3119 755 167 0 8 chr3 53478286 53478406 -174046172 - FLAM_C SINE Alu -16 127 9 2087 110 26 19 chr3 53478423 53478733 -174045845 - AluSx SINE Alu 0 312 1 408 310 9 0 chr3 53479315 53479428 -174045150 + MIR SINE MIR 101 214 -48 358 258 10 162 chr3 53479472 53479670 -174044908 - MIR SINE MIR -19 243 76 509 220 144 38 chr3 53479976 53480194 -174044384 + MIR SINE MIR 1 250 -12 646 224 8 0 chr3 53484045 53484170 -174040408 - MER5B DNA MER1_type -52 126 1 560 289 66 9 chr3 53484684 53484930 -174039648 - MIR SINE MIR 0 262 1 277 298 40 8 chr3 53485349 53485473 -174039105 + L1ME LINE L1 5737 5864 -257 1110 165 0 0 chr3 53486175 53486357 -174038221 - AluSg/x SINE Alu 0 310 129 297 200 17 0 chr3 53486974 53487034 -174037544 - MIR SINE MIR 0 262 202 205 163 23 0 chr3 53487046 53487089 -174037489 - MIR SINE MIR -163 99 56 834 242 93 64 chr3 53488285 53488694 -174035884 - MLT1J1 LTR MaLR -25 421 1 184 144 78 11 chr3 53489289 53489379 -174035199 + (CA)n Simple_repeat Simple_repeat 1 96 0 983 164 44 11 chr3 53489723 53489906 -174034672 - AluJb SINE Alu -16 296 108 493 300 56 22 chr3 53489950 53490152 -174034426 + MIR SINE MIR 35 240 -22 288 289 144 0 chr3 53490185 53490289 -174034289 - MIR SINE MIR -59 203 85 1222 157 10 0 chr3 53490608 53490812 -174033766 + AluJo SINE Alu 85 290 -22 789 239 159 69 chr3 53491321 53491711 -174032867 + L2 LINE L2 2888 3312 -1 543 228 159 21 chr3 53491778 53491923 -174032655 + MER5A DNA MER1_type 19 183 -6 210 229 84 12 chr3 53492107 53492190 -174032388 + L2 LINE L2 2910 2998 -274 1924 99 0 34 chr3 53492273 53492565 -174032013 - AluSq SINE Alu -31 282 1 1114 225 39 98 chr3 53493558 53493830 -174030748 + HsTC2 DNA Tc2 1286 1573 -325 1874 120 0 27 chr3 53493830 53494122 -174030456 + AluSx SINE Alu 3 286 -26 1114 225 39 98 chr3 53494122 53494316 -174030262 + HsTC2 DNA Tc2 1573 1900 2 375 301 45 60 chr3 53494619 53494818 -174029760 + MER91A DNA MER1_type 1 196 0 1059 231 43 0 chr3 53495795 53496003 -174028575 + MER58A DNA MER1_type 2 218 -6 276 263 94 43 chr3 53496009 53496180 -174028398 + MIR SINE MIR 20 204 -58 1676 281 60 32 chr3 53496199 53496304 -174028274 - L1MCc LINE L1 -4320 2802 2701 2404 66 3 0 chr3 53496304 53496605 -174027973 + AluY SINE Alu 3 304 -7 1676 281 60 32 chr3 53496605 53497378 -174027200 - L1MCc LINE L1 -4421 2701 1755 3485 182 15 36 chr3 53497388 53498072 -174026506 - L1MD2 LINE L1 -44 6315 5645 2389 137 55 29 chr3 53498072 53498165 -174026413 + MSTC LTR MaLR 1 90 -338 2298 92 0 0 chr3 53498165 53498469 -174026109 + AluSx SINE Alu 1 304 -8 2389 137 55 29 chr3 53498469 53498792 -174025786 + MSTC LTR MaLR 90 428 0 3485 182 15 36 chr3 53498792 53498838 -174025740 - L1MD2 LINE L1 -714 5645 5600 585 243 72 31 chr3 53498826 53499217 -174025361 - L1MCc LINE L1 -4889 1534 1264 * 304 261 75 67 chr3 53499586 53499720 -174024858 + L2 LINE L2 3138 3272 0 241 326 148 14 chr3 53500417 53500640 -174023938 - L2 LINE L2 -265 3007 2756 784 192 118 44 chr3 53500920 53501149 -174023429 - LTR48 LTR ERV1 0 787 542 747 265 27 12 chr3 53501645 53502035 -174022543 - LTR16B LTR ERVL 0 464 23 1381 98 23 9 chr3 53503212 53503412 -174021166 - L1PA14 LINE L1 -12 6149 5944 2599 41 0 0 chr3 53503412 53503705 -174020873 - AluY SINE Alu -18 293 1 1381 98 23 9 chr3 53503705 53503719 -174020859 - L1PA14 LINE L1 -217 5944 5932 1434 116 1 12 chr3 53503719 53503950 -174020628 - L1PA14 LINE L1 -106 6055 5830 354 223 354 23 chr3 53503998 53504258 -174020320 + L2 LINE L2 1870 2215 -1099 1066 148 27 84 chr3 53504284 53504458 -174020120 + LTR8 LTR ERV1 1 183 -508 1633 178 0 78 chr3 53504458 53504623 -174019955 - AluJo SINE Alu -16 296 120 2329 112 0 0 chr3 53504623 53504928 -174019650 - AluSx SINE Alu -7 305 1 2461 95 3 0 chr3 53504928 53505232 -174019346 - AluSx SINE Alu -7 305 1 1633 178 0 78 chr3 53505232 53505386 -174019192 - AluJo SINE Alu -190 122 1 1066 148 27 84 chr3 53505386 53505479 -174019099 + LTR8 LTR ERV1 183 231 -460 2378 104 0 0 chr3 53505486 53505785 -174018793 + AluY SINE Alu 1 299 -12 1920 182 72 38 chr3 53505819 53506263 -174018315 + LTR2B LTR ERV1 32 490 0 1710 214 19 79 chr3 53506264 53506745 -174017833 + LTR8 LTR ERV1 239 690 -1 293 332 55 55 chr3 53506784 53507058 -174017520 + L2 LINE L2 2358 2631 -683 287 183 21 118 chr3 53507068 53507161 -174017417 + MER21B LTR ERV1 1 84 -779 4099 148 44 3 chr3 53507163 53507845 -174016733 + MER50 LTR ERV1 1 710 -24 2267 199 55 42 chr3 53507900 53508223 -174016355 + MER21B LTR ERV1 98 434 -429 2120 130 33 25 chr3 53508223 53508584 -174015994 + THE1B LTR MaLR 1 364 0 2267 199 55 42 chr3 53508584 53508873 -174015705 + MER21B LTR ERV1 434 718 -145 5084 153 13 3 chr3 53508887 53509735 -174014843 + MER49 LTR ERV1 5 860 -63 1906 140 3 14 chr3 53511590 53511900 -174012678 - AluJb SINE Alu 0 308 2 2338 110 3 0 chr3 53512016 53512324 -174012254 + AluSx SINE Alu 3 311 -1 1824 202 52 20 chr3 53512655 53513096 -174011482 - LTR40b LTR ERVL -5 457 3 610 233 67 20 chr3 53513579 53513729 -174010849 + MER63 DNA MER1_type 3 785 -277 258 217 271 23 chr3 53513884 53514013 -174010565 - MIR SINE MIR -100 162 2 928 194 121 37 chr3 53514123 53514536 -174010042 - MLT1D LTR MaLR 0 505 23 4142 84 30 31 chr3 53514536 53515170 -174009408 + MER51A LTR ERV1 2 634 0 928 194 121 37 chr3 53515170 53515196 -174009382 - MLT1D LTR MaLR -482 23 1 1871 212 66 51 chr3 53515695 53516298 -174008280 - LTR9 LTR ERV1 0 612 1 345 251 135 80 chr3 53516968 53517106 -174007472 + MIR SINE MIR 23 173 -89 4379 32 9 4 chr3 53517106 53517661 -174006917 + LTR6B LTR ERV1 1 558 0 345 251 135 80 chr3 53517661 53517685 -174006893 + MIR SINE MIR 173 194 -68 1121 158 15 5 chr3 53517786 53517982 -174006596 + MER49 LTR ERV1 726 923 0 2148 133 0 3 chr3 53518062 53518362 -174006216 + AluSx SINE Alu 1 299 -13 226 329 14 0 chr3 53518402 53518472 -174006106 + L2 LINE L2 2659 2729 -585 295 232 33 99 chr3 53519347 53519498 -174005080 + MLT1K LTR MaLR 448 588 0 2149 118 3 10 chr3 53519558 53519863 -174004715 - AluSx SINE Alu -9 303 1 482 268 0 71 chr3 53519985 53520242 -174004336 + LTR8 LTR ERV1 89 304 -423 34 0 0 0 chr3 53520242 53520276 -174004302 + AT_rich Low_complexity Low_complexity 1 34 0 1005 204 0 69 chr3 53520276 53520454 -174004124 - AluJb SINE Alu -20 292 130 2247 122 10 0 chr3 53520454 53520758 -174003820 + AluSq SINE Alu 1 307 -6 1005 204 0 69 chr3 53520758 53520795 -174003783 - AluJb SINE Alu -182 130 92 1886 175 51 58 chr3 53520833 53521267 -174003311 + LTR8A LTR ERV1 297 727 0 222 267 119 0 chr3 53521269 53521370 -174003208 + MIR SINE MIR 102 214 -48 319 274 158 42 chr3 53521436 53521626 -174002952 + L1ME LINE L1 5576 5787 -334 1359 202 122 24 chr3 53521642 53522053 -174002525 - LTR48B LTR ERV1 0 644 194 1175 120 21 14 chr3 53522047 53522266 -174002312 + LTR23 LTR ERV1 186 438 -29 * 439 309 164 6 chr3 53522277 53522588 -174001990 - L1ME LINE L1 -377 5793 5434 282 361 62 16 chr3 53522684 53522878 -174001700 + MIR SINE MIR 20 222 -40 1631 185 28 25 chr3 53523018 53523343 -174001235 + MSTD LTR MaLR 71 396 0 2681 234 67 5 chr3 53523939 53524673 -173999905 + L1ME3A LINE L1 5392 6170 0 562 287 67 5 chr3 53524796 53525005 -173999573 + MIR SINE MIR 40 261 -1 198 0 0 0 chr3 53525018 53525040 -173999538 + (TTCA)n Simple_repeat Simple_repeat 1 22 0 268 276 0 0 chr3 53525065 53525123 -173999455 - L2 LINE L2 -66 3206 3149 667 245 25 95 chr3 53525288 53525529 -173999049 + MIR SINE MIR 32 255 -7 553 325 85 16 chr3 53525681 53525986 -173998592 + L1MC4a LINE L1 5631 5956 -1852 1505 184 105 0 chr3 53527006 53527152 -173997426 - AluJo SINE Alu -18 294 165 270 0 0 0 chr3 53527152 53527182 -173997396 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1505 184 105 0 chr3 53527182 53527301 -173997277 - AluJo SINE Alu -147 165 1 216 67 0 0 chr3 53527335 53527365 -173997213 + (CA)n Simple_repeat Simple_repeat 2 31 0 2222 119 3 0 chr3 53527387 53527682 -173996896 - AluSx SINE Alu -16 296 1 2385 109 0 0 chr3 53527837 53528140 -173996438 - AluSq SINE Alu -10 303 1 650 267 198 10 chr3 53528241 53528544 -173996034 - L2 LINE L2 -4 3309 2950 1186 234 185 78 chr3 53528549 53529088 -173995490 + L2 LINE L2 1069 1549 -1765 2006 149 3 0 chr3 53529088 53529384 -173995194 - AluJb SINE Alu -15 297 1 1186 234 185 78 chr3 53529384 53529398 -173995180 + L2 LINE L2 1549 1560 -1754 180 0 0 0 chr3 53529398 53529418 -173995160 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 2004 123 39 7 chr3 53529425 53529710 -173994868 - AluSx SINE Alu -18 294 1 2384 102 0 0 chr3 53529712 53530006 -173994572 - AluSx SINE Alu -18 294 1 1186 234 185 78 chr3 53530006 53530132 -173994446 + L2 LINE L2 1565 1834 -1480 947 247 45 51 chr3 53530129 53530441 -173994137 + L2 LINE L2 3004 3313 0 * 367 254 158 17 chr3 53530459 53530636 -173993942 - L2 LINE L2 -409 2905 2704 1155 174 47 21 chr3 53530853 53530946 -173993632 + MLT1A1 LTR MaLR 1 90 -275 2432 92 0 3 chr3 53530946 53531251 -173993327 + AluSc SINE Alu 1 304 -5 1155 174 47 21 chr3 53531251 53531392 -173993186 + MLT1A1 LTR MaLR 90 241 -124 2457 130 103 82 chr3 53531424 53531803 -173992775 - MER4B LTR ERV1 -36 574 178 2265 131 0 3 chr3 53531803 53532115 -173992463 + AluSp SINE Alu 1 311 -2 2457 130 103 82 chr3 53532115 53532297 -173992281 - MER4B LTR ERV1 -432 178 1 806 165 0 0 chr3 53532297 53532423 -173992155 + MLT1A1 LTR MaLR 239 364 -1 415 143 0 0 chr3 53532808 53532885 -173991693 - AluJo SINE Alu -1 311 235 926 154 0 63 chr3 53532885 53533060 -173991518 - AluJo SINE Alu -148 164 1 8211 165 116 35 chr3 53533321 53534945 -173989633 - MER52A LTR ERV1 0 1755 1 326 280 85 25 chr3 53535205 53535323 -173989255 + L1ME4a LINE L1 5997 6121 0 456 273 207 0 chr3 53535368 53535518 -173989060 - MER5A DNA MER1_type 0 189 9 1851 123 83 117 chr3 53535525 53535876 -173988702 - Charlie3 DNA MER1_type 0 2712 1 38 51 0 0 chr3 53537200 53537259 -173987319 + GC_rich Low_complexity Low_complexity 1 59 0 21 36 0 0 chr3 53537322 53537350 -173987228 + GC_rich Low_complexity Low_complexity 1 28 0 360 0 0 0 chr3 53537934 53537974 -173986604 + (CA)n Simple_repeat Simple_repeat 2 41 0 231 61 0 0 chr3 53539894 53539927 -173984651 + (TG)n Simple_repeat Simple_repeat 2 34 0 2252 108 0 3 chr3 53539995 53540292 -173984286 - AluSc SINE Alu -13 296 1 725 159 23 0 chr3 53540296 53540428 -173984150 + MER5A DNA MER1_type 1 135 -54 968 166 151 35 chr3 53541086 53541386 -173983192 - AluJb SINE Alu 0 302 1 787 289 85 53 chr3 53541614 53541991 -173982587 - L2 LINE L2 0 3313 2925 569 308 17 34 chr3 53541997 53542231 -173982347 - MIR SINE MIR -32 230 1 22 0 0 0 chr3 53542255 53542277 -173982301 + AT_rich Low_complexity Low_complexity 1 22 0 1385 152 4 47 chr3 53542281 53542557 -173982021 - L1MB5 LINE L1 0 6174 5911 2229 134 0 0 chr3 53543915 53544220 -173980358 + AluJo SINE Alu 1 305 -7 1144 255 90 0 chr3 53544238 53544595 -173979983 - LTR16A LTR ERVL 0 450 62 444 298 68 26 chr3 53544699 53544890 -173979688 - MIR SINE MIR 0 262 64 227 125 25 0 chr3 53544964 53545004 -173979574 + LTR33 LTR ERVL 6 46 -475 2474 62 0 20 chr3 53545077 53545381 -173979197 - AluY SINE Alu -13 298 1 2416 79 0 13 chr3 53545969 53546274 -173978304 - AluSx SINE Alu -11 301 1 704 167 9 0 chr3 53546820 53546934 -173977644 - AluJb SINE Alu -196 116 2 520 248 52 7 chr3 53547024 53547177 -173977401 - L1ME3A LINE L1 -67 6103 5944 288 330 25 25 chr3 53548154 53548272 -173976306 + MIR3 SINE MIR 3 120 -88 323 252 70 26 chr3 53548497 53548612 -173975966 - L1ME4a LINE L1 -5 6116 5997 498 237 153 57 chr3 53549198 53549426 -173975152 - MIR SINE MIR -7 255 6 2200 127 3 0 chr3 53549919 53550227 -173974351 - AluSx SINE Alu -3 309 1 2409 99 3 0 chr3 53551694 53551997 -173972581 + AluSx SINE Alu 2 305 -7 205 234 0 0 chr3 53552061 53552108 -173972470 + L2 LINE L2 3267 3313 0 720 161 9 0 chr3 53552530 53552642 -173971936 - FAM SINE Alu -72 113 1 302 221 15 29 chr3 53552823 53552891 -173971687 - L2 LINE L2 0 3313 3247 532 263 23 0 chr3 53552914 53553047 -173971531 + L2 LINE L2 3172 3307 -6 2274 88 28 0 chr3 53553047 53553330 -173971248 + AluSg SINE Alu 1 291 -19 478 185 173 93 chr3 53553771 53553893 -173970685 + MIR SINE MIR 60 200 -62 1068 199 107 7 chr3 53553893 53554184 -173970394 + MER33 DNA MER1_type 5 324 0 478 185 173 93 chr3 53554184 53554223 -173970355 + MIR SINE MIR 200 234 -28 324 0 0 0 chr3 53555208 53555244 -173969334 + (TC)n Simple_repeat Simple_repeat 2 37 0 1595 176 7 0 chr3 53555248 53555527 -173969051 - AluJo SINE Alu -31 281 1 324 230 283 0 chr3 53555577 53555690 -173968888 - MLT1G LTR MaLR -438 152 8 1012 173 97 18 chr3 53555695 53555921 -173968657 - L1ME2 LINE L1 -20 6144 5901 3522 191 8 2 chr3 53555925 53556526 -173968052 - MER82 DNA MER2_type 0 653 49 664 190 31 89 chr3 53556535 53556793 -173967785 - L1ME2 LINE L1 -243 5921 5679 843 174 0 0 chr3 53556799 53556937 -173967641 - FLAM_C SINE Alu 0 143 6 986 168 18 0 chr3 53556943 53557110 -173967468 - L1ME2 LINE L1 -479 5687 5518 1243 86 0 0 chr3 53557390 53557553 -173967025 + AluY SINE Alu 1 163 -148 1847 153 3 19 chr3 53557585 53557899 -173966679 + AluJb SINE Alu 3 311 -1 250 191 157 78 chr3 53557920 53558035 -173966543 - L1ME4a LINE L1 0 6121 5998 1026 237 158 6 chr3 53558150 53558492 -173966086 - MER34 LTR ERV1 0 542 149 772 132 8 0 chr3 53558504 53558633 -173965945 - L1PB4 LINE L1 -3 6153 6024 1297 192 15 11 chr3 53558642 53558913 -173965665 + AluJb SINE Alu 25 296 -16 361 165 0 59 chr3 53558913 53558998 -173965580 - L1PB4 LINE L1 -124 6032 5953 587 174 145 22 chr3 53558998 53559136 -173965442 - MER34 LTR ERV1 -375 167 13 335 262 7 97 chr3 53559549 53559694 -173964884 + L2 LINE L2 2677 2808 -506 1958 94 73 0 chr3 53559903 53560178 -173964400 - AluSg SINE Alu -15 295 1 2101 94 0 42 chr3 53560180 53560487 -173964091 - AluSx SINE Alu -13 299 6 275 308 119 31 chr3 53560657 53560816 -173963762 - MIR SINE MIR -28 234 62 225 265 0 0 chr3 53561424 53561473 -173963105 - L2 LINE L2 -1 3312 3264 341 226 199 27 chr3 53561761 53561907 -173962671 - MIR SINE MIR -6 256 86 443 225 62 8 chr3 53562052 53562181 -173962397 + L1ME3A LINE L1 6027 6162 -8 839 164 16 0 chr3 53562326 53562454 -173962124 - FLAM_C SINE Alu -2 131 2 549 104 224 8 chr3 53562482 53562616 -173961962 + MER53 DNA DNA 2 164 -25 2119 111 3 0 chr3 53562663 53562951 -173961627 + AluSq SINE Alu 1 289 -24 290 77 0 0 chr3 53562994 53563033 -173961545 + MER53 DNA DNA 151 189 0 1032 163 108 30 chr3 53563367 53563652 -173960926 + L1MC4a LINE L1 6862 7140 -668 745 145 0 2 chr3 53563652 53563894 -173960684 + AluSx SINE Alu 1 298 -11 1901 193 61 34 chr3 53563894 53564339 -173960239 + L1MC4 LINE L1 7211 7667 -375 195 42 0 0 chr3 53564340 53564364 -173960214 + (TCCCC)n Simple_repeat Simple_repeat 4 27 0 1589 163 16 44 chr3 53564366 53564686 -173959892 - AluJo SINE Alu -1 311 1 918 200 15 68 chr3 53564853 53564929 -173959649 - L1MB7 LINE L1 0 6184 6106 2134 111 0 0 chr3 53564929 53565227 -173959351 + AluSc SINE Alu 1 298 -11 918 200 15 68 chr3 53565227 53565415 -173959163 - L1MB7 LINE L1 -78 6106 5934 1617 162 46 37 chr3 53565460 53565787 -173958791 - MER44D DNA MER2_type 0 609 10 2154 104 3 0 chr3 53565815 53566114 -173958464 - AluSx SINE Alu -12 300 1 578 243 50 21 chr3 53566114 53566344 -173958234 - L1MB7 LINE L1 -516 5605 5359 245 196 0 0 chr3 53566930 53566976 -173957602 + MER5B DNA MER1_type 3 48 -130 2159 47 3 57 chr3 53567572 53567895 -173956683 + AluY SINE Alu 1 307 0 1807 169 110 14 chr3 53568687 53569043 -173955535 + MSTD LTR MaLR 7 396 0 4714 139 19 0 chr3 53569301 53570051 -173954527 + L1MC1 LINE L1 5557 6320 -13 323 248 184 14 chr3 53570505 53570646 -173953932 + MIR SINE MIR 86 250 -12 800 154 0 0 chr3 53570655 53570772 -173953806 + FLAM_C SINE Alu 1 117 -16 1250 196 56 18 chr3 53570807 53570872 -173953706 + L1ME1 LINE L1 53 114 -6282 2278 95 0 0 chr3 53570872 53571176 -173953402 + AluSx SINE Alu 1 304 -8 1250 196 56 18 chr3 53571176 53571396 -173953182 + L1ME1 LINE L1 114 349 -6047 3201 212 55 40 chr3 53571402 53572274 -173952304 + L1ME1 LINE L1 5290 6169 -66 2281 87 3 7 chr3 53572278 53572587 -173951991 + AluSg SINE Alu 1 308 -2 1367 144 42 128 chr3 53572604 53572957 -173951621 + LTR1 LTR ERV1 1 323 -462 823 70 0 0 chr3 53572955 53573055 -173951523 + LTR1 LTR ERV1 682 781 -4 * 264 242 1 0 chr3 53573061 53573135 -173951443 + L1MA10 LINE L1 6110 6327 0 2088 98 3 10 chr3 53574068 53574387 -173950191 + AluSx SINE Alu 1 312 0 385 70 35 0 chr3 53574410 53574467 -173950111 + AluSc SINE Alu 241 299 0 191 391 46 11 chr3 53575798 53575885 -173948693 - L2 LINE L2 -86 3186 3097 473 182 77 49 chr3 53576410 53576553 -173948025 + L1ME2 LINE L1 6004 6150 -14 243 294 130 11 chr3 53576609 53576793 -173947785 + L1MC4 LINE L1 7836 8041 -1 233 242 121 30 chr3 53577315 53577414 -173947164 - L1ME4a LINE L1 -49 6072 5965 381 299 161 0 chr3 53577694 53577868 -173946710 - MIR SINE MIR -14 248 47 2159 103 0 0 chr3 53578102 53578392 -173946186 + AluSx SINE Alu 1 290 -22 341 137 0 0 chr3 53578417 53578468 -173946110 - FLAM SINE Alu -24 109 59 995 97 0 8 chr3 53578762 53578896 -173945682 + FLAM_C SINE Alu 1 133 0 316 157 0 0 chr3 53580247 53580298 -173944280 + MER5B DNA MER1_type 3 53 -125 2296 74 0 3 chr3 53580429 53580725 -173943853 - AluSc SINE Alu -14 295 1 1092 201 112 51 chr3 53581041 53581415 -173943163 + LTR37A LTR ERV1 1 397 -29 632 212 45 0 chr3 53581450 53581582 -173942996 - L1PA16 LINE L1 -9 6157 6020 2904 95 78 17 chr3 53581607 53582031 -173942547 - L1PA16 LINE L1 -315 5851 5395 1412 198 31 7 chr3 53582031 53582319 -173942259 - AluJo SINE Alu -17 295 1 2904 95 78 17 chr3 53582319 53582356 -173942222 - L1PA16 LINE L1 -771 5395 5362 1877 134 99 38 chr3 53582529 53582813 -173941765 - MLT1A1 LTR MaLR -1 364 54 2306 90 0 0 chr3 53582813 53583112 -173941466 - AluSp SINE Alu -14 299 1 1877 134 99 38 chr3 53583112 53583170 -173941408 - MLT1A1 LTR MaLR -311 54 1 261 256 101 54 chr3 53583348 53583516 -173941062 + L2 LINE L2 2886 3061 -211 2101 121 3 6 chr3 53583566 53583879 -173940699 - AluSx SINE Alu 0 312 1 317 266 143 7 chr3 53584259 53584413 -173940165 - MIR3 SINE MIR -10 198 24 207 220 33 22 chr3 53584639 53584730 -173939848 + (TA)n Simple_repeat Simple_repeat 1 92 0 1892 195 182 4 chr3 53584799 53585255 -173939323 - REP3 LTR ERV -25 537 1 2015 139 0 3 chr3 53585323 53585626 -173938952 - AluJo SINE Alu -10 302 1 314 299 73 36 chr3 53585661 53585798 -173938780 - L1ME4a LINE L1 -119 6002 5861 1975 144 3 0 chr3 53586353 53586651 -173937927 + AluSx SINE Alu 1 299 -13 325 360 33 0 chr3 53587718 53587868 -173936710 - MIR SINE MIR -105 157 3 216 209 23 0 chr3 53588972 53589015 -173935563 + CT-rich Low_complexity Low_complexity 2 45 0 643 74 0 0 chr3 53589116 53589197 -173935381 + AluJ/FRAM SINE Alu 221 301 -11 237 191 85 0 chr3 53589211 53589258 -173935320 + MER3 DNA MER1_type 39 89 -120 860 173 0 58 chr3 53589641 53589814 -173934764 + MER3 DNA MER1_type 43 205 -4 1305 164 109 22 chr3 53589839 53590113 -173934465 - AluJb SINE Alu -14 298 1 267 264 99 25 chr3 53590309 53590430 -173934148 - L1ME4a LINE L1 -200 5921 5792 206 297 123 84 chr3 53591042 53591352 -173933226 + L2 LINE L2 2950 3271 -1 3750 182 61 2 chr3 53591369 53592322 -173932256 - L1MB7 LINE L1 -153 6031 5014 579 254 33 25 chr3 53592302 53592542 -173932036 - L1MEc LINE L1 -4540 1856 1615 * 2316 71 0 0 chr3 53592545 53592839 -173931739 + AluY SINE Alu 1 294 -17 347 130 13 0 chr3 53592840 53592917 -173931661 + (TA)n Simple_repeat Simple_repeat 1 78 0 2204 239 124 68 chr3 53592921 53593486 -173931092 - L1MEc LINE L1 -4763 1633 1101 7092 53 14 0 chr3 53593486 53594784 -173929794 - L1PA6 LINE L1 -4 6150 4846 2059 114 3 3 chr3 53594785 53595075 -173929503 - AluSx SINE Alu -19 293 4 1920 138 0 0 chr3 53595082 53595372 -173929206 - AluSx SINE Alu -22 290 1 2204 239 124 68 chr3 53595372 53596007 -173928571 - L1MEc LINE L1 -5300 1096 355 598 195 176 33 chr3 53596147 53596357 -173928221 + MER5C DNA MER1_type 80 319 -5 2043 139 7 0 chr3 53596773 53597083 -173927495 + AluSx SINE Alu 1 312 0 517 208 173 40 chr3 53597132 53597305 -173927273 + MER3 DNA MER1_type 14 209 0 1697 119 74 18 chr3 53597703 53597988 -173926590 + AluJb SINE Alu 11 311 -1 2193 110 0 0 chr3 53598067 53598366 -173926212 - AluSx SINE Alu -13 299 1 906 152 134 6 chr3 53598695 53598859 -173925719 + MER5A DNA MER1_type 3 187 -2 1782 187 14 25 chr3 53599064 53599427 -173925151 + MLT1A1 LTR MaLR 7 365 0 340 271 90 38 chr3 53599475 53599608 -173924970 + MIR SINE MIR 1 140 -122 2341 88 0 0 chr3 53599656 53599962 -173924616 - AluSc SINE Alu -3 306 1 1006 172 6 0 chr3 53600526 53600700 -173923878 + FRAM SINE Alu 1 175 -1 246 279 295 16 chr3 53600793 53600922 -173923656 + MIR SINE MIR 6 170 -92 2182 107 3 16 chr3 53601683 53602000 -173922578 - AluSp SINE Alu 0 313 1 1291 182 95 8 chr3 53602467 53602731 -173921847 + AluJb SINE Alu 3 289 -23 261 279 290 11 chr3 53602774 53603046 -173921532 - L1ME LINE L1 -253 5868 5521 2072 133 0 0 chr3 53603551 53603860 -173920718 - AluSx SINE Alu -3 309 1 339 228 173 43 chr3 53604354 53604678 -173919900 - L1ME4a LINE L1 -66 6055 5690 373 327 55 25 chr3 53604682 53604896 -173919682 - L1ME4a LINE L1 -468 5653 5397 1860 167 3 10 chr3 53604896 53605201 -173919377 - AluJo SINE Alu -8 304 2 373 327 55 25 chr3 53605201 53605346 -173919232 - L1ME4a LINE L1 -724 5397 5258 225 0 0 0 chr3 53605423 53605448 -173919130 + (TG)n Simple_repeat Simple_repeat 1 25 0 22 56 0 0 chr3 53605544 53605580 -173918998 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr3 53605697 53605720 -173918858 + AT_rich Low_complexity Low_complexity 1 23 0 2276 81 46 0 chr3 53605861 53606146 -173918432 + AluSx SINE Alu 1 298 -14 705 288 64 90 chr3 53606261 53606860 -173917718 - L1ME3A LINE L1 -326 5844 5262 1572 150 120 11 chr3 53606877 53607015 -173917563 - AluSx SINE Alu -8 304 183 2363 99 0 0 chr3 53607015 53607317 -173917261 - AluSx SINE Alu -10 302 1 1572 150 120 11 chr3 53607317 53607452 -173917126 - AluSx SINE Alu -129 183 1 213 336 92 15 chr3 53609842 53609973 -173914605 + L2 LINE L2 3123 3263 -9 539 302 79 39 chr3 53610168 53610575 -173914003 - MLT1K LTR MaLR -151 437 15 353 276 59 33 chr3 53610838 53610990 -173913588 + MIR SINE MIR 33 188 -74 775 187 87 0 chr3 53610999 53611149 -173913429 - MER5A DNA MER1_type -26 163 1 2335 91 0 13 chr3 53611615 53611913 -173912665 + AluSg SINE Alu 1 294 -16 2395 194 34 8 chr3 53612569 53613075 -173911503 - L1ME3 LINE L1 -2 6160 5642 1073 249 116 57 chr3 53613460 53613901 -173910677 - MLT1H LTR MaLR 0 549 83 581 263 104 44 chr3 53614719 53614781 -173909797 - MLT1L LTR MaLR -3 612 555 947 206 43 16 chr3 53614781 53614965 -173909613 - MER5A DNA MER1_type 0 189 1 581 263 104 44 chr3 53614965 53615153 -173909425 - MLT1L LTR MaLR -60 555 347 1577 155 108 7 chr3 53616776 53617053 -173907525 + AluJo SINE Alu 1 305 -7 434 129 86 129 chr3 53618366 53618392 -173906186 - MER33 DNA MER1_type -2261 363 337 2274 108 3 0 chr3 53618392 53618687 -173905891 + AluSx SINE Alu 1 296 -16 434 129 86 129 chr3 53618687 53618799 -173905779 - MER33 DNA MER1_type -2287 337 231 353 163 63 2 chr3 53618799 53619040 -173905538 + AluJo SINE Alu 1 296 -6 2074 102 46 0 chr3 53619044 53619328 -173905250 + AluSx SINE Alu 2 298 -14 415 114 129 171 chr3 53619331 53619401 -173905177 - MER33 DNA MER1_type -2395 190 119 2151 73 32 38 chr3 53619401 53619717 -173904861 - L1PA8A LINE L1 -4 6127 5814 415 114 129 171 chr3 53619717 53619839 -173904739 - MER33 DNA MER1_type -2466 119 6 207 114 0 0 chr3 53623366 53623401 -173901177 + (A)n Simple_repeat Simple_repeat 1 35 0 1887 199 53 21 chr3 53623736 53624173 -173900405 - LTR40b LTR ERVL -9 453 3 610 233 67 20 chr3 53624656 53624806 -173899772 + MER63 DNA MER1_type 3 785 -277 229 217 271 23 chr3 53624961 53625090 -173899488 - MIR SINE MIR -100 162 2 957 183 121 37 chr3 53625200 53625613 -173898965 - MLT1D LTR MaLR 0 505 23 4366 82 30 31 chr3 53625613 53626247 -173898331 + MER51A LTR ERV1 2 634 0 957 183 121 37 chr3 53626247 53626273 -173898305 - MLT1D LTR MaLR -482 23 1 1933 222 63 48 chr3 53626772 53627375 -173897203 - LTR9 LTR ERV1 0 612 1 494 234 82 53 chr3 53628045 53628183 -173896395 + MIR SINE MIR 25 174 -88 4642 31 9 4 chr3 53628183 53628738 -173895840 + LTR6B LTR ERV1 1 558 0 494 234 82 53 chr3 53628738 53628816 -173895762 + MIR SINE MIR 174 248 -14 378 0 0 0 chr3 53628999 53629041 -173895537 + (TA)n Simple_repeat Simple_repeat 2 43 0 2312 119 0 3 chr3 53629041 53629352 -173895226 - AluSx SINE Alu -2 310 1 363 210 97 124 chr3 53629546 53629732 -173894846 + L1ME LINE L1 5483 5663 -458 2170 95 7 3 chr3 53629734 53630018 -173894560 + AluY SINE Alu 1 285 -26 1340 139 0 54 chr3 53630033 53630256 -173894322 - AluJo SINE Alu -33 279 69 29 28 0 0 chr3 53630546 53630582 -173893996 + AT_rich Low_complexity Low_complexity 1 36 0 652 27 0 0 chr3 53631381 53631455 -173893123 - tRNA-Arg-CGC tRNA tRNA -2 74 1 24 0 0 0 chr3 53631796 53631820 -173892758 + GC_rich Low_complexity Low_complexity 1 24 0 994 168 0 18 chr3 53633996 53634163 -173890415 - FRAM SINE Alu 0 166 3 289 311 65 31 chr3 53634527 53634701 -173889877 + MIR SINE MIR 10 192 -56 1543 186 52 0 chr3 53634703 53634994 -173889584 - AluJb SINE Alu -6 306 1 2076 144 17 23 chr3 53635297 53635644 -173888934 - MER7A DNA MER2_type -3 343 1 222 292 31 0 chr3 53635694 53635759 -173888819 + L2 LINE L2 3205 3271 -1 186 133 0 0 chr3 53636549 53636579 -173887999 + (T)n Simple_repeat Simple_repeat 1 30 0 407 301 7 14 chr3 53636980 53637126 -173887452 + MER5A DNA MER1_type 32 176 -13 2199 125 0 0 chr3 53637648 53637945 -173886633 - AluSx SINE Alu -15 297 1 4158 118 38 46 chr3 53638038 53638377 -173886201 - L1MB3 LINE L1 -2 6181 5841 2064 135 0 0 chr3 53638377 53638681 -173885897 - AluY SINE Alu -7 304 1 4158 118 38 46 chr3 53638681 53639086 -173885492 - L1MB3 LINE L1 -342 5841 5443 22 56 0 0 chr3 53639231 53639267 -173885311 + AT_rich Low_complexity Low_complexity 1 36 0 738 158 28 10 chr3 53639393 53639532 -173885046 + L1M3 LINE L1 5606 5748 -416 511 130 26 0 chr3 53639560 53639637 -173884941 - FLAM SINE Alu -17 126 48 1982 158 0 0 chr3 53639649 53639947 -173884631 - AluJb SINE Alu 0 312 15 1854 73 0 17 chr3 53640942 53641174 -173883404 - AluSq SINE Alu -20 293 66 1987 89 11 32 chr3 53641174 53641455 -173883123 - AluSc SINE Alu -33 276 1 767 21 0 0 chr3 53641587 53641680 -173882898 + L1PA2 LINE L1 6063 6155 0 23 0 0 0 chr3 53641710 53641733 -173882845 + AT_rich Low_complexity Low_complexity 1 23 0 57 39 0 0 chr3 53641809 53641887 -173882691 + AT_rich Low_complexity Low_complexity 1 78 0 2003 134 21 0 chr3 53641930 53642213 -173882365 - AluSx SINE Alu -23 289 1 2041 130 3 40 chr3 53643039 53643363 -173881215 - AluSx SINE Alu 0 312 1 557 257 15 36 chr3 53643984 53644177 -173880401 - L1MA10 LINE L1 0 6334 5983 * 1063 200 33 33 chr3 53644171 53644416 -173880162 + L1ME1 LINE L1 5585 5829 -337 453 287 45 0 chr3 53645351 53645508 -173879070 - MIR SINE MIR -24 238 75 23 33 0 0 chr3 53646163 53646193 -173878385 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 53646347 53646375 -173878203 + AT_rich Low_complexity Low_complexity 1 28 0 2418 92 0 3 chr3 53647887 53648190 -173876388 - AluSq SINE Alu -7 306 5 203 205 205 51 chr3 53648363 53648441 -173876137 - L2 LINE L2 -43 3229 3140 599 205 34 0 chr3 53649735 53649852 -173874726 + Tigger6a DNA MER2_type 1 121 -962 2596 174 47 10 chr3 53649854 53650370 -173874208 + Tigger6a DNA MER2_type 369 903 -180 566 184 65 65 chr3 53650449 53650617 -173873961 + Tigger6a DNA MER2_type 916 1083 0 21 0 0 0 chr3 53650886 53650907 -173873671 + AT_rich Low_complexity Low_complexity 1 21 0 201 305 51 0 chr3 53651693 53651752 -173872826 - L2 LINE L2 -20 3252 3191 2014 141 26 7 chr3 53652574 53652880 -173871698 - AluSx SINE Alu 0 312 1 23 0 0 0 chr3 53652888 53652911 -173871667 + AT_rich Low_complexity Low_complexity 1 23 0 435 188 0 0 chr3 53653067 53653147 -173871431 + MER116 DNA Mariner 1 80 0 291 320 74 8 chr3 53653308 53653430 -173871148 - L2 LINE L2 -1 3271 3142 195 226 132 0 chr3 53653573 53653679 -173870899 - L2 LINE L2 -240 3032 2913 1449 189 46 4 chr3 53653731 53654011 -173870567 + AluJo SINE Alu 1 292 -20 1895 149 37 7 chr3 53654626 53654921 -173869657 - AluSx SINE Alu -8 304 1 399 306 200 23 chr3 53654982 53655463 -173869115 - L2 LINE L2 -460 2854 2289 21 0 0 0 chr3 53655494 53655515 -173869063 + AT_rich Low_complexity Low_complexity 1 21 0 30 69 0 0 chr3 53656365 53656423 -173868155 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr3 53656507 53656528 -173868050 + AT_rich Low_complexity Low_complexity 1 21 0 925 123 0 0 chr3 53656836 53656966 -173867612 + FRAM SINE Alu 1 130 -46 2341 127 51 0 chr3 53657258 53657589 -173866989 + MER7A DNA MER2_type 1 346 0 2307 99 0 0 chr3 53657880 53658174 -173866404 + AluSg SINE Alu 1 294 -16 390 284 60 8 chr3 53658443 53658577 -173866001 - L2 LINE L2 -419 2895 2755 1587 185 25 7 chr3 53658577 53658858 -173865720 + AluJo SINE Alu 1 286 -26 286 286 217 22 chr3 53658863 53659185 -173865393 - L2 LINE L2 -1667 1647 1263 237 231 149 30 chr3 53659188 53659322 -173865256 + L1ME4a LINE L1 5969 6118 -3 933 181 0 18 chr3 53660144 53660310 -173864268 + AluJo SINE Alu 127 289 -23 22 0 0 0 chr3 53660313 53660335 -173864243 + AT_rich Low_complexity Low_complexity 1 22 0 562 260 23 9 chr3 53660469 53660650 -173863928 + L1MC2 LINE L1 5683 5813 -357 560 195 101 41 chr3 53660861 53661030 -173863548 - L1MB4 LINE L1 -1 6179 6001 242 253 160 31 chr3 53662818 53663012 -173861566 - L1MC4a LINE L1 -1767 6041 5823 2487 82 0 0 chr3 53663626 53663932 -173860646 + AluSp SINE Alu 3 308 -5 41 0 0 0 chr3 53665777 53665818 -173858760 + AT_rich Low_complexity Low_complexity 1 41 0 10619 201 60 46 chr3 53665978 53666336 -173858242 - L1MB4 LINE L1 -24 6654 6302 303 71 0 0 chr3 53666336 53666378 -173858200 + (CA)n Simple_repeat Simple_repeat 1 42 0 10619 201 60 46 chr3 53666378 53666686 -173857892 - L1MB4 LINE L1 -376 6302 6000 378 0 0 0 chr3 53666686 53666728 -173857850 + (TG)n Simple_repeat Simple_repeat 2 43 0 10619 201 60 46 chr3 53666728 53669678 -173854900 - L1MB4 LINE L1 -678 6000 3092 2022 87 80 10 chr3 53669678 53669967 -173854611 - AluY SINE Alu -2 309 1 10619 201 60 46 chr3 53669967 53670752 -173853826 - L1MB4 LINE L1 -3586 3092 2319 1745 191 0 3 chr3 53670752 53671046 -173853532 - AluJo SINE Alu -19 293 1 10619 201 60 46 chr3 53671046 53671146 -173853432 - L1MB4 LINE L1 -4359 2319 2222 2228 112 0 0 chr3 53671146 53671459 -173853119 - AluSx SINE Alu 0 313 1 10619 201 60 46 chr3 53671459 53672882 -173851696 - L1MB4 LINE L1 -4456 2222 496 292 330 55 33 chr3 53673100 53673282 -173851296 - L1MB4 LINE L1 -6314 228 43 229 235 0 73 chr3 53673259 53673327 -173851251 - L1M3c LINE L1 -6078 63 1 * 214 218 0 18 chr3 53673862 53673917 -173850661 + (TA)n Simple_repeat Simple_repeat 2 55 0 388 301 102 54 chr3 53674468 53674803 -173849775 - L1ME4a LINE L1 -170 5951 5601 275 372 39 23 chr3 53675348 53675477 -173849101 + MIR SINE MIR 16 146 -62 456 312 97 69 chr3 53675749 53675996 -173848582 - MIR SINE MIR -3 259 6 25 23 0 23 chr3 53676186 53676205 -173848373 + AT_rich Low_complexity Low_complexity 1 19 -23 2190 134 0 0 chr3 53676205 53676512 -173848066 + AluSx SINE Alu 1 307 -5 25 23 0 23 chr3 53676512 53676535 -173848043 + AT_rich Low_complexity Low_complexity 19 42 0 1557 169 49 14 chr3 53676535 53676819 -173847759 - AluJo SINE Alu -18 294 1 249 239 99 0 chr3 53676853 53676924 -173847654 - MER5B DNA MER1_type -74 104 27 386 314 103 2 chr3 53677709 53677939 -173846639 - L1MC/D LINE L1 -374 5747 5466 1848 161 3 10 chr3 53677939 53678243 -173846335 - AluJb SINE Alu -10 302 1 386 314 103 2 chr3 53678243 53678322 -173846256 - L1MC/D LINE L1 -655 5466 5396 361 312 5 111 chr3 53679951 53680150 -173844428 + MER5B DNA MER1_type 1 178 0 268 200 100 0 chr3 53680195 53680255 -173844323 - MER5A DNA MER1_type -110 79 14 357 173 280 34 chr3 53681940 53681953 -173842625 - L1ME4a LINE L1 -3 6118 6109 1631 153 89 151 chr3 53681953 53682661 -173841917 - MER4A LTR ERV1 0 664 1 357 173 280 34 chr3 53682661 53682926 -173841652 - L1ME4a LINE L1 -12 6109 5764 332 379 110 0 chr3 53683479 53683624 -173840954 + L2 LINE L2 3110 3270 -2 565 205 192 0 chr3 53683797 53683953 -173840625 - MER58C DNA MER1_type -5 210 25 2089 145 10 0 chr3 53684749 53685053 -173839525 + 7SLRNA srpRNA srpRNA 1 307 -13 592 182 273 45 chr3 53685307 53685461 -173839117 + MER5A DNA MER1_type 1 189 0 1679 133 97 56 chr3 53687558 53687918 -173836660 + THE1C LTR MaLR 1 375 0 326 188 12 34 chr3 53688241 53688355 -173836223 + MER52A LTR ERV1 1 91 -1187 310 281 42 73 chr3 53689023 53689119 -173835459 + L1MDa LINE L1 385 477 -6063 6722 178 49 14 chr3 53689215 53690484 -173834094 + MER52A LTR ERV1 443 1755 0 294 87 0 0 chr3 53690660 53690706 -173833872 + (TA)n Simple_repeat Simple_repeat 2 47 0 41 0 0 0 chr3 53690717 53690758 -173833820 + AT_rich Low_complexity Low_complexity 1 41 0 1571 215 139 61 chr3 53690941 53691145 -173833433 - MLT1E LTR MaLR -11 582 395 2041 111 100 60 chr3 53691145 53691495 -173833083 - THE1B LTR MaLR 0 364 1 1571 215 139 61 chr3 53691495 53691660 -173832918 - MLT1E LTR MaLR -198 395 244 2396 86 0 0 chr3 53691660 53691962 -173832616 - AluSq SINE Alu -11 302 1 1571 215 139 61 chr3 53691962 53692131 -173832447 - MLT1E LTR MaLR -349 244 1 239 195 0 0 chr3 53692228 53692269 -173832309 - MLT1H1 LTR MaLR 0 555 515 557 245 121 81 chr3 53692700 53692839 -173831739 - L1ME3 LINE L1 -211 5951 5819 2133 101 11 0 chr3 53692839 53693144 -173831434 - AluSx SINE Alu 0 308 1 557 245 121 81 chr3 53693144 53693728 -173830850 - L1ME3 LINE L1 -343 5819 5111 1650 164 65 0 chr3 53694986 53695279 -173829299 - AluJb SINE Alu 0 312 1 1529 235 142 0 chr3 53695307 53695716 -173828862 - MLT1H1 LTR MaLR -73 482 16 1833 265 157 20 chr3 53695726 53696765 -173827813 + L2 LINE L2 2116 3280 -33 473 273 42 6 chr3 53698073 53698238 -173826340 - MER5B DNA MER1_type -7 171 1 3791 168 40 67 chr3 53698867 53699798 -173824780 - LTR5 LTR ERVK -63 906 1 2066 135 3 7 chr3 53699987 53700290 -173824288 - AluSx SINE Alu -10 302 1 183 227 188 62 chr3 53701300 53701428 -173823150 + MIR SINE MIR 21 164 -98 560 214 0 0 chr3 53703640 53703738 -173820840 - MER81 DNA DNA -16 98 1 365 248 107 8 chr3 53703804 53703925 -173820653 - MER103 DNA DNA -2 164 32 323 198 66 0 chr3 53704201 53704292 -173820286 - MER5A DNA MER1_type -84 105 9 599 204 147 0 chr3 53704311 53704468 -173820110 + MER5A DNA MER1_type 1 180 -9 183 274 32 0 chr3 53704482 53704544 -173820034 + MER5B DNA MER1_type 1 64 -114 362 311 40 13 chr3 53705690 53705841 -173818737 - MIR SINE MIR -92 170 16 1285 227 44 35 chr3 53706285 53706494 -173818084 + L1ME3 LINE L1 5723 5929 -233 2195 142 3 0 chr3 53706494 53706805 -173817773 + AluSx SINE Alu 1 312 0 1285 227 44 35 chr3 53706805 53707004 -173817574 + L1ME3 LINE L1 5929 6137 -25 2293 95 0 0 chr3 53707004 53707289 -173817289 + AluSx SINE Alu 1 285 -27 1285 227 44 35 chr3 53707289 53707314 -173817264 + L1ME3 LINE L1 6137 6160 -2 321 238 86 67 chr3 53708403 53708613 -173815965 + L1MEd LINE L1 602 815 -5304 1106 243 50 35 chr3 53708613 53708930 -173815648 + MLT1A2 LTR MaLR 1 322 -52 941 162 0 0 chr3 53708930 53709072 -173815506 + FLAM_C SINE Alu 2 143 0 292 158 53 0 chr3 53709072 53709129 -173815449 + MLT1A2 LTR MaLR 311 370 -4 533 236 54 14 chr3 53709179 53709327 -173815251 + MER97b DNA MER1_type? 26 179 -874 900 243 84 42 chr3 53709369 53710028 -173814550 + L1MEd LINE L1 869 1562 -4748 308 289 26 72 chr3 53710411 53710563 -173814015 + L1ME4a LINE L1 56 200 -5919 672 313 80 19 chr3 53710905 53711528 -173813050 + L1ME4a LINE L1 4034 4694 -1435 360 309 13 13 chr3 53711554 53711706 -173812872 + L1ME4a LINE L1 5717 5868 -285 332 250 40 20 chr3 53711926 53712026 -173812552 + L1ME4a LINE L1 5945 6046 -58 523 175 70 9 chr3 53712678 53712792 -173811786 + MER3 DNA MER1_type 8 128 -81 284 196 0 103 chr3 53712823 53712920 -173811658 + MER3 DNA MER1_type 122 208 -1 213 274 78 0 chr3 53713598 53713700 -173810878 - MIR SINE MIR -78 130 21 313 271 169 0 chr3 53716901 53717019 -173807559 + MIR SINE MIR 47 184 -78 707 214 5 75 chr3 53717291 53717478 -173807100 + MER5B DNA MER1_type 5 178 0 460 227 50 32 chr3 53718336 53718525 -173806053 + MER89 LTR ERV1 3 300 -259 351 194 73 40 chr3 53718522 53718646 -173805932 - MLT1K LTR MaLR -27 561 434 * 845 202 21 0 chr3 53718799 53718987 -173805591 - MER89 LTR ERV1 0 559 368 188 259 172 35 chr3 53719241 53719357 -173805221 - MIR3 SINE MIR -53 155 24 341 246 107 48 chr3 53719506 53719783 -173804795 + MLT1H LTR MaLR 79 384 -211 409 268 122 0 chr3 53719910 53720033 -173804545 - MER5B DNA MER1_type -3 175 38 270 286 251 20 chr3 53720261 53720464 -173804114 + MIR SINE MIR 13 262 0 240 258 81 0 chr3 53720575 53720637 -173803941 - MER91B DNA MER1_type -7 183 117 574 167 22 80 chr3 53720680 53720818 -173803760 - MER91B DNA MER1_type -60 130 1 425 209 270 37 chr3 53722408 53722571 -173802007 - MIR SINE MIR -11 251 51 379 279 30 56 chr3 53722786 53722983 -173801595 - MER63A DNA MER1_type -10 200 9 1509 96 5 5 chr3 53723110 53723309 -173801269 + AluSq SINE Alu 100 298 -15 282 347 56 42 chr3 53723657 53723801 -173800777 + MIR SINE MIR 117 262 0 207 201 0 0 chr3 53723861 53723907 -173800671 - MIR SINE MIR -67 141 103 252 308 33 0 chr3 53724372 53724492 -173800086 + (TCCA)n Simple_repeat Simple_repeat 3 126 0 843 174 7 0 chr3 53724508 53724798 -173799780 + (TCCA)n Simple_repeat Simple_repeat 1 292 0 199 253 126 11 chr3 53725155 53725242 -173799336 - L2 LINE L2 -12 3260 3164 473 273 115 11 chr3 53725564 53725747 -173798831 - L1ME LINE L1 -304 5817 5616 1454 227 51 16 chr3 53726329 53726778 -173797800 + L1M4 LINE L1 4894 5358 -788 2536 141 18 18 chr3 53726782 53727178 -173797400 - MSTD LTR MaLR 0 396 1 642 129 30 0 chr3 53727180 53727304 -173797274 + L1ME1 LINE L1 5908 6021 -145 3033 81 59 5 chr3 53727304 53727684 -173796894 + MLT2A1 LTR ERVL 1 408 -36 303 28 0 0 chr3 53727684 53727720 -173796858 + (TC)n Simple_repeat Simple_repeat 2 37 0 3033 81 59 5 chr3 53727720 53727760 -173796818 + MLT2A1 LTR ERVL 408 444 0 759 212 53 20 chr3 53727792 53728051 -173796527 + MLT1H LTR MaLR 1 310 -239 235 200 18 0 chr3 53728148 53728203 -173796375 + MLT1H LTR MaLR 463 518 -37 2232 206 130 22 chr3 53728210 53728855 -173795723 - L1MC4 LINE L1 -188 7854 7140 661 275 246 20 chr3 53729019 53729651 -173794927 + L2 LINE L2 2542 3312 -1 513 307 36 24 chr3 53729765 53729931 -173794647 + L2 LINE L2 3102 3269 -3 1329 141 10 5 chr3 53730035 53730234 -173794344 - AluJb SINE Alu -27 285 86 186 143 0 0 chr3 53730329 53730364 -173794214 + (A)n Simple_repeat Simple_repeat 1 35 0 306 340 133 11 chr3 53730716 53730987 -173793591 + HAL1b LINE L1 399 702 -646 342 322 83 74 chr3 53731057 53731504 -173793074 + L1ME4a LINE L1 1838 2288 -4108 402 280 39 19 chr3 53731520 53731727 -173792851 + L1ME4a LINE L1 5783 5993 -197 326 141 43 33 chr3 53731735 53731827 -173792751 + L1ME4a LINE L1 6060 6152 -38 1056 124 0 0 chr3 53731828 53731965 -173792613 - AluJo SINE Alu -175 137 1 288 176 0 0 chr3 53732437 53732488 -173792090 - MER5A DNA MER1_type -138 51 1 319 320 101 43 chr3 53732779 53733150 -173791428 + L2 LINE L2 2691 3081 -191 228 309 0 0 chr3 53733257 53733312 -173791266 + L2 LINE L2 3217 3271 -1 747 218 45 6 chr3 53733351 53733507 -173791071 + MER5B DNA MER1_type 2 163 -15 2262 109 149 11 chr3 53733624 53734000 -173790578 - MSTA LTR MaLR 0 428 1 336 277 102 7 chr3 53734422 53734559 -173790019 + MIR SINE MIR 97 246 -16 641 276 17 0 chr3 53734768 53734949 -173789629 - MER63A DNA MER1_type -26 184 1 509 279 91 0 chr3 53734989 53735143 -173789435 + MER5A DNA MER1_type 13 180 -9 222 184 0 0 chr3 53736032 53736070 -173788508 - L2 LINE L2 -2 3311 3274 284 280 17 17 chr3 53736466 53736584 -173787994 + (TCCA)n Simple_repeat Simple_repeat 2 119 0 240 100 0 0 chr3 53737194 53737234 -173787344 + (CA)n Simple_repeat Simple_repeat 2 41 0 475 269 132 38 chr3 53737250 53737673 -173786905 - L1ME4a LINE L1 -100 6021 5559 481 235 223 32 chr3 53738852 53738954 -173785624 - L2 LINE L2 -19 3294 3213 304 263 0 12 chr3 53738954 53739034 -173785544 + MER116 DNA Mariner 1 79 -1 481 235 223 32 chr3 53739034 53739182 -173785396 - L2 LINE L2 -100 3213 2996 190 297 0 40 chr3 53739307 53739381 -173785197 - MER5A DNA MER1_type -76 113 43 545 227 86 71 chr3 53739439 53739637 -173784941 + MIR SINE MIR 48 248 -14 25 0 0 0 chr3 53739746 53739771 -173784807 + AT_rich Low_complexity Low_complexity 1 25 0 1604 262 66 36 chr3 53740038 53740573 -173784005 - L1ME3A LINE L1 -155 6015 5434 2368 83 0 13 chr3 53740573 53740873 -173783705 - AluY SINE Alu -15 296 1 1604 262 66 36 chr3 53740873 53741264 -173783314 - L1ME3A LINE L1 -736 5434 5056 1546 199 120 33 chr3 53741957 53742057 -173782521 + MER63B DNA MER1_type 2 92 -970 2314 85 16 7 chr3 53742057 53742362 -173782216 - AluSq SINE Alu -5 308 1 1546 199 120 33 chr3 53742362 53742654 -173781924 + MER63B DNA MER1_type 92 428 -8 186 320 27 13 chr3 53743055 53743130 -173781448 + L2 LINE L2 2731 2806 -508 21 0 0 0 chr3 53743319 53743340 -173781238 + AT_rich Low_complexity Low_complexity 1 21 0 895 145 0 0 chr3 53743348 53743472 -173781106 - FLAM_C SINE Alu -9 124 1 2097 104 46 0 chr3 53743565 53743845 -173780733 - AluSq SINE Alu -20 293 1 220 283 0 0 chr3 53744286 53744332 -173780246 + (TG)n Simple_repeat Simple_repeat 1 46 0 451 255 214 0 chr3 53744448 53744593 -173779985 - MER5A DNA MER1_type 0 189 14 377 224 34 73 chr3 53744654 53744833 -173779745 + MER113 DNA MER1_type? 43 214 -307 1076 147 79 0 chr3 53745140 53745330 -173779248 - MER3 DNA MER1_type -4 205 1 198 103 0 0 chr3 53746235 53746264 -173778314 + (TTTCC)n Simple_repeat Simple_repeat 2 30 0 665 255 58 30 chr3 53746949 53747301 -173777277 - L1ME3A LINE L1 -219 5951 5576 294 238 15 95 chr3 53747384 53747687 -173776891 + L1MDa LINE L1 2443 2718 -3822 388 263 62 62 chr3 53747694 53747873 -173776705 + L1MDa LINE L1 2790 2968 -3572 467 315 99 23 chr3 53747882 53748266 -173776312 + L1MEd LINE L1 845 1257 -4862 285 261 134 29 chr3 53748509 53748746 -173775832 - L1MC4 LINE L1 -319 7723 7360 216 158 0 0 chr3 53748782 53748820 -173775758 + (CA)n Simple_repeat Simple_repeat 1 38 0 1955 157 3 22 chr3 53748895 53749213 -173775365 + AluJo SINE Alu 1 312 0 414 276 160 13 chr3 53750342 53750498 -173774080 + MER5A DNA MER1_type 9 187 -2 362 291 92 14 chr3 53750502 53750643 -173773935 - MER5B DNA MER1_type -4 174 23 2095 117 0 7 chr3 53751142 53751425 -173773153 - AluSx SINE Alu -31 281 1 465 327 136 30 chr3 53751543 53751882 -173772696 - L1 LINE L1 -3392 2754 2380 200 297 101 27 chr3 53752014 53752162 -173772416 + L2 LINE L2 3013 3171 -142 512 243 50 29 chr3 53752176 53752316 -173772262 - L2 LINE L2 -2 3311 3169 1868 271 97 41 chr3 53752351 53752978 -173771600 + L2 LINE L2 1690 2375 -939 1818 122 20 99 chr3 53752978 53753321 -173771257 + AluYb8 SINE Alu 1 316 -2 1868 271 97 41 chr3 53753321 53753504 -173771074 + L2 LINE L2 2375 2546 -768 1771 226 154 5 chr3 53753505 53754063 -173770515 + L1ME3A LINE L1 5523 6163 -7 2296 87 10 7 chr3 53754090 53754389 -173770189 - AluSp SINE Alu -13 300 1 417 284 13 98 chr3 53754393 53754458 -173770120 + L2 LINE L2 2556 2625 -689 2497 81 0 0 chr3 53754458 53754755 -173769823 - AluSc SINE Alu -12 297 1 417 284 13 98 chr3 53754755 53754815 -173769763 + L2 LINE L2 2625 2688 -626 1826 143 38 14 chr3 53754815 53755108 -173769470 - AluJb SINE Alu -12 300 1 417 284 13 98 chr3 53755108 53755206 -173769372 + L2 LINE L2 2688 2761 -553 563 267 79 61 chr3 53755206 53755341 -173769237 + L2 LINE L2 3015 3146 -167 1652 214 76 36 chr3 53755341 53755790 -173768788 + MLT1C LTR MaLR 1 467 0 563 267 79 61 chr3 53755790 53755931 -173768647 + L2 LINE L2 3146 3296 -17 1596 208 28 25 chr3 53755987 53756386 -173768192 + L1ME1 LINE L1 5761 6160 -6 611 137 29 0 chr3 53756715 53756817 -173767761 + BC200 scRNA scRNA 50 154 -46 5499 45 2 2 chr3 53757127 53757954 -173766624 + L1P2 LINE L1 4663 5489 -665 635 298 132 6 chr3 53758060 53758416 -173766162 - LTR16A LTR ERVL -20 430 30 1812 163 156 23 chr3 53758428 53758865 -173765713 - REP3 LTR ERV -6 556 62 1287 225 49 8 chr3 53758918 53759136 -173765442 + L1M4 LINE L1 3796 4036 -2110 2273 107 7 3 chr3 53759136 53759444 -173765134 - AluSx SINE Alu -3 309 1 1287 225 49 8 chr3 53759444 53759590 -173764988 + L1M4 LINE L1 4036 4175 -1971 463 290 60 6 chr3 53760738 53760921 -173763657 + LTR16C LTR ERVL 299 491 0 1258 326 62 20 chr3 53761141 53762103 -173762475 + HERV16 LTR ERVL 349 1370 -3626 670 330 55 17 chr3 53762379 53762865 -173761713 + HERV16 LTR ERVL 1749 2244 -2752 1136 312 74 17 chr3 53762919 53763590 -173760988 + HERV16 LTR ERVL 2340 3067 -1929 258 293 30 10 chr3 53763800 53763899 -173760679 + HERV16 LTR ERVL 4787 4887 -109 867 167 24 0 chr3 53764091 53764259 -173760319 - L1MB7 LINE L1 -19 6165 5994 709 265 53 7 chr3 53764303 53764642 -173759936 + LTR16C LTR ERVL 96 481 -10 300 239 15 0 chr3 53764650 53764717 -173759861 - L3 LINE CR1 -1091 486 419 2404 82 0 7 chr3 53764742 53765047 -173759531 + AluY SINE Alu 1 303 -8 800 231 0 0 chr3 53765074 53765230 -173759348 - AluJo SINE Alu -156 156 1 222 310 69 11 chr3 53765240 53765327 -173759251 - L3 LINE CR1 -1224 353 262 219 114 0 0 chr3 53766436 53766471 -173758107 + (CAA)n Simple_repeat Simple_repeat 2 36 0 219 295 66 0 chr3 53768559 53768620 -173755958 + L3 LINE CR1 1495 1559 -18 948 132 0 7 chr3 53769940 53770076 -173754502 - AluJo SINE Alu -177 135 1 1931 156 0 10 chr3 53771403 53771705 -173752873 + AluJb SINE Alu 12 310 -2 757 196 16 37 chr3 53772016 53772205 -173752373 + L1MC5 LINE L1 7729 7913 -48 29 94 0 0 chr3 53773228 53773313 -173751265 + AT_rich Low_complexity Low_complexity 1 85 0 2162 77 47 7 chr3 53774027 53774326 -173750252 + AluY SINE Alu 1 311 0 1175 104 85 20 chr3 53774424 53774625 -173749953 + MER46A DNA MER2_type 23 236 0 1332 90 0 0 chr3 53774638 53774804 -173749774 - AluSg/x SINE Alu -15 297 132 228 333 67 9 chr3 53775299 53775404 -173749174 + L2 LINE L2 3187 3297 -16 247 298 64 28 chr3 53775664 53775805 -173748773 + L1ME LINE L1 5572 5717 -404 589 280 0 7 chr3 53775890 53776040 -173748538 - MIR SINE MIR -98 164 16 22 0 0 0 chr3 53778343 53778365 -173746213 + AT_rich Low_complexity Low_complexity 1 22 0 2110 137 3 3 chr3 53778446 53778752 -173745826 + AluSx SINE Alu 1 306 -6 374 299 134 0 chr3 53778766 53778893 -173745685 - MIR3 SINE MIR -15 193 50 22 56 0 0 chr3 53779247 53779283 -173745295 + AT_rich Low_complexity Low_complexity 1 36 0 269 252 140 75 chr3 53780205 53780554 -173744024 + MLT1J2 LTR MaLR 1 372 -78 2349 75 0 0 chr3 53781167 53781461 -173743117 - AluY SINE Alu -17 294 1 304 325 56 125 chr3 53781532 53781702 -173742876 + L2 LINE L2 2828 3008 -264 891 241 44 10 chr3 53781702 53781905 -173742673 + MER63A DNA MER1_type 1 210 0 304 325 56 125 chr3 53781905 53782199 -173742379 + L2 LINE L2 3008 3260 -12 328 293 83 51 chr3 53782451 53782608 -173741970 + MIR3 SINE MIR 3 164 -44 312 269 115 8 chr3 53782930 53783060 -173741518 - MIR SINE MIR 0 262 119 288 299 21 0 chr3 53783203 53783300 -173741278 + L2 LINE L2 3199 3297 -16 457 264 90 28 chr3 53784779 53784957 -173739621 - MER5A DNA MER1_type 0 189 1 204 97 0 0 chr3 53786051 53786082 -173738496 + (TG)n Simple_repeat Simple_repeat 2 32 0 221 259 0 0 chr3 53786304 53786358 -173738220 - L2 LINE L2 0 3272 3219 189 335 31 100 chr3 53787259 53787549 -173737029 - L2 LINE L2 -22 3250 2981 221 222 22 0 chr3 53788155 53788200 -173736378 - L2 LINE L2 -10 3262 3217 15681 124 60 6 chr3 53788494 53791072 -173733506 - Tigger2 DNA MER2_type 0 2718 1 381 361 92 44 chr3 53791086 53791424 -173733154 - L2 LINE L2 -14 3258 2905 398 307 67 28 chr3 53792233 53792412 -173732166 - MIR SINE MIR -13 249 64 2364 90 0 0 chr3 53793299 53793598 -173730980 - AluSg SINE Alu -11 299 1 747 188 0 0 chr3 53793775 53793903 -173730675 + FRAM SINE Alu 1 128 -48 747 311 37 29 chr3 53794230 53794652 -173729926 + L1MC4a LINE L1 5478 5781 -578 363 319 154 46 chr3 53795894 53796357 -173728221 + L2 LINE L2 1713 2255 -1059 2348 94 3 0 chr3 53796357 53796656 -173727922 + AluSp SINE Alu 1 300 -13 363 319 154 46 chr3 53796656 53796782 -173727796 + L2 LINE L2 2255 2366 -948 10017 105 26 1 chr3 53797209 53799574 -173725004 + L1PA10 LINE L1 3713 6127 -41 26 0 0 0 chr3 53799584 53799610 -173724968 + AT_rich Low_complexity Low_complexity 1 26 0 1090 134 30 35 chr3 53799779 53799981 -173724597 - L1MC1 LINE L1 0 6333 6133 1472 169 0 4 chr3 53801336 53801591 -173722987 - AluJo SINE Alu -49 263 10 1867 102 8 0 chr3 53801713 53801958 -173722620 - AluSx SINE Alu -13 299 53 732 133 0 0 chr3 53802172 53802321 -173722257 + AluJb SINE Alu 170 318 0 183 80 0 0 chr3 53802426 53802451 -173722127 + (TG)n Simple_repeat Simple_repeat 2 26 0 219 189 0 0 chr3 53803662 53803715 -173720863 + (TG)n Simple_repeat Simple_repeat 2 54 0 366 291 39 19 chr3 53804141 53804244 -173720334 - L2 LINE L2 -6 3266 3162 306 291 102 24 chr3 53805541 53806046 -173718532 + L1MC5 LINE L1 7268 7682 -279 308 236 86 69 chr3 53806505 53806679 -173717899 + L1ME4a LINE L1 5750 5926 -195 239 301 48 0 chr3 53807381 53807464 -173717114 + L1MC/D LINE L1 5791 5877 -1931 2320 228 43 27 chr3 53807754 53808381 -173716197 + L1ME1 LINE L1 5525 6161 -5 277 248 91 0 chr3 53808388 53808509 -173716069 - L1ME4a LINE L1 -16 6105 5974 379 288 42 0 chr3 53808644 53808762 -173715816 - L1ME4a LINE L1 -230 5891 5769 2355 88 0 0 chr3 53808939 53809245 -173715333 + AluSx SINE Alu 1 306 -6 388 257 69 35 chr3 53809285 53809429 -173715149 + MIR SINE MIR 99 247 -15 1951 155 0 0 chr3 53809635 53809945 -173714633 + AluJb SINE Alu 1 310 -2 788 33 0 0 chr3 53810160 53810251 -173714327 + L1PA5 LINE L1 6056 6146 -8 35 24 0 0 chr3 53810251 53810293 -173714285 + AT_rich Low_complexity Low_complexity 1 42 0 390 250 96 10 chr3 53810656 53810760 -173713818 - MIR SINE MIR -60 148 36 601 140 30 0 chr3 53810953 53811053 -173713525 + MER5A DNA MER1_type 10 112 -77 256 188 260 42 chr3 53810974 53811070 -173713508 - MER5A DNA MER1_type -23 166 50 * 218 195 0 0 chr3 53812526 53812567 -173712011 + (TG)n Simple_repeat Simple_repeat 1 41 0 731 289 86 33 chr3 53813026 53813539 -173711039 - L1MC4a LINE L1 -1895 5913 5374 715 226 69 0 chr3 53814601 53814760 -173709818 - MER5A DNA MER1_type -16 173 4 515 211 218 0 chr3 53815237 53815379 -173709199 - MER5A DNA MER1_type -6 183 11 293 278 102 35 chr3 53815424 53815679 -173708899 - HAL1 LINE L1 -208 2299 2028 252 59 0 0 chr3 53815798 53815832 -173708746 + (CAAAC)n Simple_repeat Simple_repeat 1 34 0 180 273 13 26 chr3 53815837 53815914 -173708664 + L2 LINE L2 2919 2994 -278 289 266 94 39 chr3 53816518 53816646 -173707932 + L2 LINE L2 2952 3086 -227 1789 245 78 18 chr3 53816685 53817200 -173707378 + MLT1H LTR MaLR 4 549 0 673 286 47 0 chr3 53817205 53817397 -173707181 + L2 LINE L2 3113 3313 0 554 265 34 20 chr3 53817466 53817613 -173706965 + MIR SINE MIR 12 160 -102 802 186 0 0 chr3 53817614 53817743 -173706835 + FLAM_C SINE Alu 2 130 -13 210 37 0 0 chr3 53817743 53817770 -173706808 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 269 365 115 0 chr3 53818028 53818176 -173706402 + MIR SINE MIR 54 218 -44 303 250 196 9 chr3 53818493 53818605 -173705973 - MIR SINE MIR -82 180 48 438 266 57 0 chr3 53818643 53818767 -173705811 - MIR SINE MIR -11 251 121 2260 96 0 0 chr3 53819306 53819607 -173704971 - AluSp SINE Alu -12 301 1 2185 112 0 3 chr3 53819815 53820119 -173704459 - AluSq SINE Alu -10 303 1 987 135 83 5 chr3 53820129 53820322 -173704256 - L1MA7 LINE L1 -5 6286 6079 5943 147 35 17 chr3 53820687 53820873 -173703705 + L1MC1 LINE L1 5169 5350 -983 664 62 0 0 chr3 53820873 53820954 -173703624 + AluSg1 SINE Alu 2 82 -227 5943 147 35 17 chr3 53820954 53821913 -173702665 + L1MC1 LINE L1 5350 6333 0 239 302 68 62 chr3 53822251 53822295 -173702283 + L2 LINE L2 2669 2711 -603 2173 102 0 0 chr3 53822295 53822589 -173701989 + AluSg SINE Alu 1 294 -16 239 302 68 62 chr3 53822589 53822736 -173701842 + L2 LINE L2 2711 2861 -453 349 247 24 0 chr3 53822979 53823064 -173701514 + L2 LINE L2 3225 3311 -2 201 323 112 19 chr3 53823280 53823441 -173701137 + L2 LINE L2 2256 2431 -883 598 206 119 46 chr3 53823979 53824173 -173700405 - MER3 DNA MER1_type 0 209 2 222 255 0 0 chr3 53824632 53824679 -173699899 - L2 LINE L2 -38 3234 3188 348 24 0 0 chr3 53824868 53824909 -173699669 + (TTA)n Simple_repeat Simple_repeat 1 41 0 973 189 5 63 chr3 53827658 53827801 -173696777 + MER3 DNA MER1_type 1 128 -81 1457 161 35 28 chr3 53827801 53828087 -173696491 - AluJb SINE Alu -18 294 7 973 189 5 63 chr3 53828087 53828165 -173696413 + MER3 DNA MER1_type 128 209 0 390 296 28 28 chr3 53829089 53829305 -173695273 + L1MC4a LINE L1 5704 5919 -1889 279 54 0 0 chr3 53829312 53829349 -173695229 + (TG)n Simple_repeat Simple_repeat 1 37 0 331 305 54 68 chr3 53830262 53830557 -173694021 + L2 LINE L2 2896 3186 -86 1681 171 3 0 chr3 53831060 53831358 -173693220 - AluJo SINE Alu -13 299 1 485 313 116 6 chr3 53831856 53832185 -173692393 - L1ME LINE L1 -297 5824 5460 739 80 36 0 chr3 53832332 53832470 -173692108 + (TA)n Simple_repeat Simple_repeat 1 143 0 657 228 42 0 chr3 53833039 53833206 -173691372 + L1ME4a LINE L1 5945 6118 -3 1792 226 57 60 chr3 53833424 53834020 -173690558 - L1MC4 LINE L1 -14 8028 7435 831 162 43 22 chr3 53834132 53834317 -173690261 - L1MC4 LINE L1 -1208 6834 6646 3342 111 2 10 chr3 53834338 53834825 -173689753 + L1PA15 LINE L1 5675 6157 -8 402 241 85 14 chr3 53835057 53835198 -173689380 - L1MA10 LINE L1 -5 6329 6179 205 216 39 0 chr3 53835202 53835253 -173689325 + CT-rich Low_complexity Low_complexity 3 55 0 2167 108 3 3 chr3 53835253 53835550 -173689028 - AluSx SINE Alu -15 297 1 1718 232 60 16 chr3 53835553 53835984 -173688594 - L1ME1 LINE L1 -165 6001 5552 2103 100 3 13 chr3 53837526 53837826 -173686752 + AluSx SINE Alu 3 299 -13 192 316 13 0 chr3 53838620 53838696 -173685882 - MIR SINE MIR -67 141 65 208 226 0 0 chr3 53840071 53840133 -173684445 + A-rich Low_complexity Low_complexity 1 62 0 447 185 87 0 chr3 53840868 53840960 -173683618 + MER103 DNA DNA 2 101 -65 338 223 89 27 chr3 53840963 53840981 -173683597 + MER103 DNA DNA 42 57 -109 2213 97 7 0 chr3 53840981 53841290 -173683288 + AluSq SINE Alu 1 311 -2 338 223 89 27 chr3 53841290 53841383 -173683195 + MER103 DNA DNA 57 160 -6 216 310 6 0 chr3 53842012 53842171 -173682407 + (TG)n Simple_repeat Simple_repeat 1 160 0 536 248 56 8 chr3 53842173 53842298 -173682280 + MER45A DNA AcHobo 3 133 -45 213 178 0 0 chr3 53842346 53842391 -173682187 + (TG)n Simple_repeat Simple_repeat 1 45 0 455 346 73 11 chr3 53842567 53842746 -173681832 + L2 LINE L2 3124 3313 0 762 81 18 9 chr3 53845282 53845393 -173679185 + HY1 scRNA scRNA 1 112 0 500 235 114 7 chr3 53848036 53848185 -173676393 + LTR16A LTR ERVL 286 450 0 342 333 0 0 chr3 53848423 53848516 -173676062 - MIR SINE MIR -101 161 69 185 333 0 21 chr3 53849874 53849970 -173674608 + L2 LINE L2 3137 3230 -42 933 257 8 20 chr3 53850171 53850424 -173674154 + MLT1H1 LTR MaLR 27 276 -279 541 312 119 35 chr3 53850454 53850765 -173673813 - L2 LINE L2 -6 3266 2930 429 150 33 111 chr3 53850869 53850925 -173673653 - L1MC5 LINE L1 -36 7925 7866 3522 129 17 13 chr3 53850925 53851450 -173673128 + MER1A DNA MER1_type 1 527 0 429 150 33 111 chr3 53851450 53851546 -173673032 - L1MC5 LINE L1 -95 7866 7785 209 185 37 19 chr3 53851551 53851605 -173672973 + CT-rich Low_complexity Low_complexity 3 57 0 602 316 126 29 chr3 53852031 53852546 -173672032 - L2 LINE L2 -378 2936 2372 1046 250 130 34 chr3 53852878 53853354 -173671224 - MLT1H1 LTR MaLR -31 524 3 316 330 19 10 chr3 53853519 53853622 -173670956 - MIR SINE MIR -140 122 19 1642 211 25 91 chr3 53854403 53854954 -173669624 + MLT1H LTR MaLR 3 517 -32 183 156 31 0 chr3 53855218 53855250 -173669328 + MIR SINE MIR 109 141 -67 1737 215 62 17 chr3 53855391 53855871 -173668707 - Charlie4a DNA MER1_type -4 504 3 273 165 196 105 chr3 53856289 53856383 -173668195 + MER5A DNA MER1_type 23 134 -55 1683 133 56 11 chr3 53856383 53856669 -173667909 - AluJo SINE Alu -13 299 1 273 165 196 105 chr3 53856669 53856707 -173667871 + MER5A DNA MER1_type 134 167 -22 1216 137 213 28 chr3 53858648 53858897 -173665681 - AluJo SINE Alu -7 295 1 222 260 167 0 chr3 53865444 53865540 -173659038 + MIR SINE MIR 12 123 -139 208 343 139 15 chr3 53866208 53866345 -173658233 - L3 LINE CR1 -231 1346 1193 2307 122 0 0 chr3 53866703 53867007 -173657571 - AluSx SINE Alu -8 304 1 2249 114 3 0 chr3 53867032 53867321 -173657257 - AluSg SINE Alu -20 290 1 201 280 206 19 chr3 53867844 53867951 -173656627 - L2 LINE L2 -214 3058 2932 235 49 49 0 chr3 53867985 53868026 -173656552 + (CAA)n Simple_repeat Simple_repeat 3 45 0 482 231 46 0 chr3 53868033 53868141 -173656437 + L1MEc LINE L1 111 223 -6173 3014 211 36 31 chr3 53868151 53868732 -173655846 + L1MEc LINE L1 2179 2756 -3459 2329 100 10 0 chr3 53868732 53869031 -173655547 + AluSq SINE Alu 1 302 -11 3014 211 36 31 chr3 53869031 53869111 -173655467 + L1MEc LINE L1 2756 2834 -3381 1338 72 116 5 chr3 53869111 53869318 -173655260 - MER30 DNA MER1_type 0 230 1 3014 211 36 31 chr3 53869318 53869505 -173655073 + L1MEc LINE L1 2834 2993 -3222 1105 153 157 4 chr3 53870073 53870308 -173654270 + L1MB7 LINE L1 5914 6184 0 268 322 25 106 chr3 53870636 53870996 -173653582 + L2 LINE L2 2928 3258 -14 425 122 148 6 chr3 53872491 53872587 -173651991 - MER5B DNA MER1_type 0 178 3 402 306 142 18 chr3 53872739 53872958 -173651620 - L3 LINE CR1 -128 1449 1204 401 311 0 0 chr3 53873497 53873603 -173650975 - L2 LINE L2 -9 3304 3199 258 227 42 42 chr3 53874094 53874184 -173650394 + MIR SINE MIR 101 189 -73 340 247 17 2 chr3 53874290 53874396 -173650182 + MIR SINE MIR 43 150 -58 279 327 55 9 chr3 53874446 53874556 -173650022 - MIR SINE MIR -85 177 63 306 262 65 20 chr3 53874588 53874690 -173649888 - MIR SINE MIR -40 168 60 395 321 36 12 chr3 53875614 53875782 -173648796 + L1MDb LINE L1 177 348 -6195 * 2998 189 71 34 chr3 53875777 53876599 -173647979 + L1MDb LINE L1 1061 1912 -4628 916 220 5 0 chr3 53876609 53876800 -173647778 + L1M4 LINE L1 3758 3949 -2197 406 278 43 57 chr3 53876820 53877029 -173647549 - L1ME LINE L1 -383 5738 5533 1478 257 84 30 chr3 53877147 53877932 -173646646 + L2 LINE L2 2477 3311 -2 345 264 168 0 chr3 53877936 53878133 -173646445 + L1ME1 LINE L1 5785 6014 -107 513 217 130 0 chr3 53878212 53878373 -173646205 + L1ME1 LINE L1 5985 6166 0 206 305 17 0 chr3 53879127 53879186 -173645392 - MIR SINE MIR -131 77 18 197 329 0 24 chr3 53879228 53879313 -173645265 - MIR3 SINE MIR -32 176 94 205 371 43 9 chr3 53879496 53879612 -173644966 + MIR3 SINE MIR 54 173 -35 714 251 44 60 chr3 53880390 53880537 -173644041 - MER112 DNA MER1_type -12 248 105 2214 122 3 0 chr3 53880537 53880841 -173643737 - AluSg SINE Alu -5 305 1 714 251 44 60 chr3 53880841 53880944 -173643634 - MER112 DNA MER1_type -155 105 2 810 222 14 56 chr3 53881838 53882054 -173642524 - MER3 DNA MER1_type 0 209 3 4369 133 30 17 chr3 53882197 53882910 -173641668 + MER50 LTR ERV1 1 722 -12 1070 186 43 24 chr3 53882910 53883120 -173641458 + MER50-int LTR ERV1 7 220 -6985 528 200 20 0 chr3 53883132 53883232 -173641346 - FLAM_A SINE Alu -40 102 1 236 249 146 8 chr3 53884249 53884367 -173640211 + MIR SINE MIR 23 161 -47 330 293 94 14 chr3 53884960 53885124 -173639454 + MIR SINE MIR 30 203 -59 224 301 36 12 chr3 53885678 53885761 -173638817 + MIR SINE MIR 3 87 -175 240 250 125 0 chr3 53885971 53886083 -173638495 - L1ME4a LINE L1 -1 6120 5995 327 65 0 0 chr3 53886221 53886267 -173638311 + (TG)n Simple_repeat Simple_repeat 2 47 0 288 250 13 13 chr3 53886277 53886353 -173638225 + Charlie4 DNA MER1_type 1882 1957 -4 367 272 159 31 chr3 53886372 53886567 -173638011 - L1ME4a LINE L1 -172 5949 5730 519 269 70 58 chr3 53890805 53891047 -173633531 + MIR SINE MIR 18 262 0 188 258 52 72 chr3 53892029 53892126 -173632452 - MIR SINE MIR -50 212 118 286 192 102 0 chr3 53892707 53892799 -173631779 - MIR SINE MIR -62 146 47 316 335 124 21 chr3 53893290 53893484 -173631094 - MIR SINE MIR -43 219 6 236 326 182 16 chr3 53894052 53894239 -173630339 + MIR SINE MIR 29 246 -16 1330 101 57 48 chr3 53896163 53896391 -173628187 - MER30 DNA MER1_type 0 230 1 982 166 26 100 chr3 53896632 53896903 -173627675 + MLT1B LTR MaLR 1 251 -139 2039 138 0 0 chr3 53898115 53898446 -173626132 + AluSx SINE Alu 3 333 0 2658 221 45 43 chr3 53898795 53899658 -173624920 + L1ME2 LINE L1 4475 5339 -807 574 223 36 0 chr3 53900218 53900357 -173624221 - MER113 DNA MER1_type? -58 463 320 410 195 30 115 chr3 53902700 53902900 -173621678 + L1MC5 LINE L1 7153 7335 -626 620 219 8 8 chr3 53902927 53903050 -173621528 - MER5B DNA MER1_type -55 123 1 454 173 0 0 chr3 53903053 53903134 -173621444 + L1MC5 LINE L1 7333 7413 -548 1453 200 58 58 chr3 53903136 53903359 -173621219 + L1MC5 LINE L1 7479 7704 -257 2019 151 6 10 chr3 53903359 53903670 -173620908 + AluSx SINE Alu 3 312 0 1453 200 58 58 chr3 53903670 53903881 -173620697 + L1MC5 LINE L1 7703 7913 -48 590 266 170 13 chr3 53903892 53904121 -173620457 + MER102a DNA MER1_type 63 327 -3 194 0 39 0 chr3 53905288 53905314 -173619264 + (CA)n Simple_repeat Simple_repeat 1 27 0 551 250 7 34 chr3 53905933 53906081 -173618497 + MIR SINE MIR 119 262 0 494 225 206 41 chr3 53911287 53911505 -173613073 - MIR SINE MIR -7 255 2 363 130 19 0 chr3 53912267 53912321 -173612257 - MER3 DNA MER1_type -154 55 1 240 296 102 23 chr3 53912442 53912618 -173611960 + L1ME2 LINE L1 5614 5803 -367 702 182 61 20 chr3 53912624 53912772 -173611806 - MER58B DNA MER1_type 0 341 188 321 212 94 74 chr3 53912824 53912991 -173611587 + L1ME2 LINE L1 5833 6005 -116 4821 194 48 22 chr3 53913139 53914212 -173610366 + L1MC4 LINE L1 6942 8042 0 826 161 7 0 chr3 53914233 53914370 -173610208 + FLAM_C SINE Alu 2 139 -4 193 261 72 0 chr3 53914552 53914621 -173609957 + MIR SINE MIR 59 132 -76 1558 160 0 11 chr3 53915841 53916103 -173608475 + AluJo SINE Alu 8 266 -46 1424 192 23 0 chr3 53916157 53916423 -173608155 + AluJo SINE Alu 3 274 -38 248 200 15 15 chr3 53916899 53916964 -173607614 + MER5B DNA MER1_type 104 168 -10 531 0 0 0 chr3 53919409 53919468 -173605110 + (TA)n Simple_repeat Simple_repeat 2 60 0 2520 17 0 13 chr3 53920916 53921217 -173603361 - AluY SINE Alu -14 297 1 2290 97 3 0 chr3 53922125 53922435 -173602143 + AluSq SINE Alu 1 311 -2 257 239 120 21 chr3 53922813 53922955 -173601623 - L1ME4a LINE L1 0 6121 5966 600 176 38 6 chr3 53923040 53923175 -173601403 - MER5A DNA MER1_type -46 143 4 301 302 0 12 chr3 53923958 53924044 -173600534 + L2 LINE L2 3188 3272 0 300 225 0 34 chr3 53924317 53924406 -173600172 - HsTC2 DNA Tc2 -1811 87 2 437 248 47 81 chr3 53924406 53924555 -173600023 - MIR SINE MIR -107 155 12 341 337 20 59 chr3 53925106 53925308 -173599270 - MIR SINE MIR -44 218 25 548 286 5 54 chr3 53925334 53925519 -173599059 + MER91B DNA MER1_type 3 178 -12 595 321 44 20 chr3 53928026 53928275 -173596303 - MIR SINE MIR -6 256 2 1020 251 88 29 chr3 53929101 53929487 -173595091 + L1ME1 LINE L1 5801 6098 -68 319 188 62 62 chr3 53932641 53932721 -173591857 + L2 LINE L2 3234 3313 0 2112 64 7 34 chr3 53932839 53933135 -173591443 - AluSc SINE Alu -21 288 1 1907 149 19 68 chr3 53933817 53934227 -173590351 + MLT1B LTR MaLR 1 390 0 24 53 0 0 chr3 53936359 53936397 -173588181 + AT_rich Low_complexity Low_complexity 1 38 0 641 155 107 36 chr3 53938124 53938292 -173586286 + MER33 DNA MER1_type 34 213 -111 3213 145 48 28 chr3 53939082 53939627 -173584951 - MER21A LTR ERV1 0 931 376 1239 106 89 64 chr3 53939632 53939714 -173584864 - MER21A LTR ERV1 -667 264 186 2326 71 3 13 chr3 53939714 53940023 -173584555 + AluSp SINE Alu 1 306 -7 1239 106 89 64 chr3 53940023 53940175 -173584403 - MER21A LTR ERV1 -745 186 24 469 92 0 0 chr3 53940177 53940242 -173584336 + (TAGA)n Simple_repeat Simple_repeat 3 67 0 395 249 26 72 chr3 53940387 53940546 -173584032 - MIR SINE MIR -66 142 40 571 332 58 4 chr3 53940862 53941088 -173583490 - MIR SINE MIR -15 247 10 3429 183 73 9 chr3 53941714 53942396 -173582182 - MER21B LTR ERV1 -1 862 137 486 139 47 12 chr3 53942410 53942496 -173582082 + MER50 LTR ERV1 8 96 -638 13650 172 15 32 chr3 53942497 53944943 -173579635 + MER50-int LTR ERV1 1095 3362 -3843 874 273 51 60 chr3 53945211 53945258 -173579320 + MER50-int LTR ERV1 2919 2965 -2504 2098 87 7 42 chr3 53945258 53945567 -173579011 + AluSp SINE Alu 1 298 -15 874 273 51 60 chr3 53945567 53946029 -173578549 + MER50-int LTR ERV1 2965 3918 -1551 874 263 68 70 chr3 53946176 53946888 -173577690 - MER50-int LTR ERV1 -1182 4316 3080 1023 313 50 43 chr3 53947055 53948101 -173576477 + MER50-int LTR ERV1 4655 5697 -1394 1230 39 19 0 chr3 53948132 53948286 -173576292 + MER50-int LTR ERV1 7041 7197 -8 3698 154 65 40 chr3 53948286 53948980 -173575598 + MER50 LTR ERV1 1 711 -23 622 182 45 0 chr3 53948981 53949091 -173575487 - MER21B LTR ERV1 -748 115 1 698 253 98 47 chr3 53949516 53949566 -173575012 - L2 LINE L2 0 3313 3267 1086 208 57 0 chr3 53949566 53949778 -173574800 - MER58A DNA MER1_type 0 224 1 698 253 98 47 chr3 53949778 53950004 -173574574 - L2 LINE L2 -46 3267 3023 841 144 0 0 chr3 53950005 53950123 -173574455 + FLAM_C SINE Alu 1 118 -15 185 162 54 0 chr3 53950160 53950197 -173574381 - L2 LINE L2 -276 3037 2999 1272 221 86 72 chr3 53950197 53950762 -173573816 + MLT1F1 LTR MaLR 1 555 0 923 220 86 19 chr3 53950796 53951043 -173573535 + MLT1G1 LTR MaLR 1 242 -348 2099 77 0 55 chr3 53951043 53951354 -173573224 + AluY SINE Alu 2 295 -16 923 220 86 19 chr3 53951354 53951402 -173573176 + MLT1G1 LTR MaLR 242 285 -305 536 269 19 13 chr3 53951410 53951566 -173573012 - L2 LINE L2 -315 2998 2842 * 972 216 141 32 chr3 53951536 53951883 -173572695 - L2 LINE L2 -639 2675 2291 1221 251 139 53 chr3 53951893 53952398 -173572180 - MER41C LTR ERV1 -5 549 2 347 200 33 33 chr3 53952401 53952491 -173572087 - L2 LINE L2 -1027 2287 2198 2343 61 3 7 chr3 53952534 53952831 -173571747 + AluY SINE Alu 1 296 -15 1099 161 42 21 chr3 53952834 53953079 -173571499 - L1MB2 LINE L1 0 6168 5935 1465 150 4 52 chr3 53953102 53953369 -173571209 + LTR8 LTR ERV1 1 254 -437 1898 110 0 0 chr3 53953373 53953628 -173570950 + AluSx SINE Alu 35 289 -23 369 234 8 70 chr3 53954219 53954347 -173570231 - MER5A DNA MER1_type -42 147 28 265 327 98 39 chr3 53954304 53954509 -173570069 - MIR SINE MIR -45 217 1 * 501 328 28 6 chr3 53954509 53954636 -173569942 + MIR SINE MIR 127 257 -5 336 263 0 0 chr3 53954645 53954759 -173569819 + (CAT)n Simple_repeat Simple_repeat 2 115 0 254 269 45 15 chr3 53954780 53954847 -173569731 - MIR SINE MIR -124 84 16 2024 105 6 38 chr3 53954949 53955263 -173569315 - AluSg SINE Alu -6 304 1 684 168 40 0 chr3 53956309 53956434 -173568144 - MSTB2 LTR MaLR -327 130 1 382 229 107 23 chr3 53956435 53956566 -173568012 + LTR16A1 LTR ERVL 316 457 0 288 306 28 0 chr3 53956606 53956714 -173567864 - MER103 DNA DNA -24 142 32 306 350 25 0 chr3 53956732 53956852 -173567726 + MIR SINE MIR 20 142 -120 1628 241 119 34 chr3 53956859 53957445 -173567133 + L1ME1 LINE L1 5527 6162 -4 29 0 0 0 chr3 53957705 53957734 -173566844 + AT_rich Low_complexity Low_complexity 1 29 0 561 158 0 0 chr3 53958294 53958395 -173566183 + GA-rich Low_complexity Low_complexity 2 102 0 1194 52 35 0 chr3 53958395 53958567 -173566011 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 457 338 45 40 chr3 53958866 53958994 -173565584 + MIR SINE MIR 19 150 -112 1594 148 30 33 chr3 53958994 53959173 -173565405 - AluSc SINE Alu -5 304 125 207 0 0 0 chr3 53959173 53959196 -173565382 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1594 148 30 33 chr3 53959196 53959321 -173565257 - AluSc SINE Alu -184 125 1 457 338 45 40 chr3 53959321 53959414 -173565164 + MIR SINE MIR 150 241 -21 483 79 16 0 chr3 53959418 53959481 -173565097 + AluY SINE Alu 35 98 -213 1441 115 86 0 chr3 53959762 53959971 -173564607 - MER30 DNA MER1_type 0 230 4 3449 174 65 23 chr3 53960083 53960811 -173563767 + L1MA9 LINE L1 5349 6106 -206 5292 232 82 51 chr3 53962593 53963015 -173561563 - L1MB7 LINE L1 -295 5889 5482 2705 164 24 0 chr3 53963015 53963431 -173561147 - MSTB LTR MaLR 0 426 1 5292 232 82 51 chr3 53963431 53963683 -173560895 - L1MB7 LINE L1 -702 5482 5239 2394 66 3 0 chr3 53963683 53963970 -173560608 - AluY SINE Alu -23 288 1 5292 232 82 51 chr3 53963970 53965831 -173558747 - L1MB7 LINE L1 -945 5239 3437 204 40 0 0 chr3 53965831 53965856 -173558722 + (TC)n Simple_repeat Simple_repeat 1 25 0 1958 133 0 0 chr3 53965856 53966134 -173558444 - AluSx SINE Alu -32 280 3 5292 232 82 51 chr3 53966134 53966327 -173558251 - L1MB7 LINE L1 -2746 3438 3083 194 324 41 90 chr3 53966892 53967037 -173557541 - L2 LINE L2 -182 3090 2953 661 196 69 123 chr3 53967132 53967498 -173557080 + MLT1H LTR MaLR 129 542 0 374 0 0 21 chr3 53967579 53967626 -173556952 + (TA)n Simple_repeat Simple_repeat 1 46 0 24 32 0 0 chr3 53969555 53969586 -173554992 + AT_rich Low_complexity Low_complexity 1 31 0 6392 116 21 2 chr3 53969764 53971238 -173553340 + L1PA12 LINE L1 4676 6168 0 1174 213 25 33 chr3 53973211 53973451 -173551127 + MER8 DNA MER2_type 2 239 0 791 272 74 25 chr3 53973859 53974102 -173550476 + MER54A LTR ERVL 303 557 -344 245 377 74 30 chr3 53974599 53974896 -173549682 + L3 LINE CR1 189 498 -1079 1727 186 47 3 chr3 53975411 53975749 -173548829 + MLT1A1 LTR MaLR 1 353 -12 458 364 41 21 chr3 53975843 53976134 -173548444 + ERVL LTR ERVL 1390 1686 -4078 * 860 286 45 32 chr3 53976121 53976432 -173548146 + ERVL LTR ERVL 2866 3180 -2474 * 2282 183 59 39 chr3 53976406 53977072 -173547506 + pTR5 LTR ERV1 741 1419 -1019 343 301 109 25 chr3 53977225 53977464 -173547114 + L2 LINE L2 2964 3222 -91 2047 142 0 3 chr3 53977485 53977795 -173546783 - AluSx SINE Alu -3 309 1 359 234 8 70 chr3 53978774 53978902 -173545676 - MER5A DNA MER1_type -42 147 28 238 327 99 40 chr3 53978859 53979061 -173545517 - MIR SINE MIR -45 217 4 * 470 328 28 6 chr3 53979061 53979191 -173545387 + MIR SINE MIR 124 257 -5 336 263 0 0 chr3 53979200 53979314 -173545264 + (CAT)n Simple_repeat Simple_repeat 2 115 0 257 269 45 15 chr3 53979335 53979402 -173545176 - MIR SINE MIR -124 84 16 2103 108 6 38 chr3 53979504 53979818 -173544760 - AluSg SINE Alu -6 304 1 393 331 106 0 chr3 53980915 53981066 -173543512 + MIR SINE MIR 90 256 -6 632 207 24 71 chr3 53981099 53981222 -173543356 + MER5B DNA MER1_type 1 115 -63 2107 89 92 0 chr3 53981222 53981504 -173543074 - AluSc SINE Alu -1 308 1 632 207 24 71 chr3 53981504 53981549 -173543029 + MER5B DNA MER1_type 115 161 -17 2255 157 69 65 chr3 53981813 53982277 -173542301 - MLT1C LTR MaLR 0 467 2 237 213 62 25 chr3 53982376 53982456 -173542122 - MIR3 SINE MIR -48 160 78 355 93 56 0 chr3 53983739 53983793 -173540785 + MLT1A2 LTR MaLR 318 374 0 224 247 247 40 chr3 53983925 53984075 -173540503 - MIR SINE MIR -54 208 28 191 333 0 0 chr3 53985624 53985687 -173538891 - L2 LINE L2 -5 3308 3246 218 291 0 0 chr3 53985743 53985798 -173538780 + MER5B DNA MER1_type 21 75 -103 259 259 69 132 chr3 53986145 53986612 -173537966 - L2 LINE L2 -59 3213 2731 198 326 45 67 chr3 53987007 53987096 -173537482 + L2 LINE L2 3150 3236 -36 1687 176 0 29 chr3 53988835 53989148 -173535430 + AluJo SINE Alu 1 304 -8 1226 127 49 20 chr3 53989148 53989509 -173535069 - MER4D LTR ERV1 -454 449 1 855 233 46 54 chr3 53989514 53989887 -173534691 + L1ME LINE L1 530 899 -5171 27 73 0 0 chr3 53989932 53989987 -173534591 + GC_rich Low_complexity Low_complexity 1 55 0 1082 176 118 9 chr3 53991746 53992069 -173532509 + L1ME LINE L1 2808 3165 -2915 937 178 12 12 chr3 53992069 53992238 -173532340 + FRAM SINE Alu 1 162 -14 2421 259 15 12 chr3 53992296 53992982 -173531596 + L1ME LINE L1 3229 3916 -2164 506 256 99 47 chr3 53993367 53993391 -173531187 + MER5A DNA MER1_type 9 30 -159 2337 113 0 0 chr3 53993391 53993701 -173530877 - AluY SINE Alu -1 310 1 1444 170 39 100 chr3 53993703 53994033 -173530545 - AluJb SINE Alu -2 310 1 506 256 99 47 chr3 53994033 53994177 -173530401 + MER5A DNA MER1_type 30 189 0 537 142 32 14 chr3 53994397 53994508 -173530070 + MER61E LTR ERV1 1 119 -484 246 333 0 0 chr3 53994612 53994690 -173529888 + LTR28 LTR ERV1 147 224 -796 * 315 172 141 0 chr3 53994682 53994746 -173529832 + MER51A LTR ERV1 208 280 -354 * 664 217 49 25 chr3 53994722 53995074 -173529504 + MER52A LTR ERV1 336 1232 -32 3389 235 51 52 chr3 53995130 53995399 -173529179 - L1M LINE L1 -744 5402 5134 1636 211 6 6 chr3 53995399 53995711 -173528867 - AluJo SINE Alu 0 312 1 3389 235 51 52 chr3 53995711 53996022 -173528556 - L1M LINE L1 -1012 5134 4824 1772 143 34 0 chr3 53996022 53996288 -173528290 - AluJb SINE Alu -11 301 27 3389 235 51 52 chr3 53996288 53997246 -173527332 - L1M LINE L1 -1322 4824 3889 481 156 46 184 chr3 53997235 53997453 -173527125 - L1MC/D LINE L1 -1987 5798 5611 * 247 238 79 63 chr3 53997453 53997579 -173526999 + MER52A LTR ERV1 1 128 -1627 7573 201 68 29 chr3 53997849 53999485 -173525093 + MER52A LTR ERV1 56 1755 0 4565 200 36 48 chr3 53999486 54000791 -173523787 - L1MC/D LINE L1 -743 5403 4336 2096 117 10 3 chr3 54000791 54001091 -173523487 - AluSx SINE Alu -10 302 1 4565 200 36 48 chr3 54001091 54001418 -173523160 - L1MC/D LINE L1 -1810 4336 4007 614 211 8 0 chr3 54001424 54001547 -173523031 - L1PB4 LINE L1 -12 6144 6021 2310 170 62 34 chr3 54001549 54001778 -173522800 + LOR1b LTR ERV1 1 222 -239 2179 109 3 0 chr3 54001778 54002072 -173522506 - AluSg SINE Alu -15 295 1 2310 170 62 34 chr3 54002072 54002290 -173522288 + LOR1b LTR ERV1 222 461 0 30831 119 47 44 chr3 54002290 54004839 -173519739 + LOR1b-int LTR ERV1 1 2541 -5579 2060 128 34 0 chr3 54004839 54005137 -173519441 - AluSx SINE Alu -4 308 1 30831 119 47 44 chr3 54005137 54008094 -173516484 + LOR1b-int LTR ERV1 2541 5524 -2596 1821 107 37 4 chr3 54008074 54008346 -173516232 + LOR1b-int LTR ERV1 5782 6062 -2058 * 742 65 0 0 chr3 54008346 54008438 -173516140 + LOR1b-int LTR ERV1 8029 8120 0 2558 189 29 2 chr3 54008438 54008887 -173515691 + LOR1b LTR ERV1 1 461 0 4556 214 26 28 chr3 54008895 54009978 -173514600 + L1 LINE L1 2889 3971 -2175 2122 132 3 3 chr3 54009978 54010289 -173514289 + AluSx SINE Alu 1 311 -1 4556 214 26 28 chr3 54010289 54010416 -173514162 + L1 LINE L1 3971 4097 -2049 842 145 0 0 chr3 54010420 54010537 -173514041 + FLAM_C SINE Alu 1 117 -26 405 0 0 0 chr3 54010537 54010582 -173513996 + (CA)n Simple_repeat Simple_repeat 2 46 0 416 219 55 31 chr3 54010582 54010710 -173513868 + L1 LINE L1 4086 4216 -1930 * 1339 157 16 51 chr3 54010703 54010803 -173513775 - L1M3 LINE L1 -648 5532 5430 2149 125 30 0 chr3 54010803 54011106 -173513472 - AluSx SINE Alu 0 312 1 1339 157 16 51 chr3 54011106 54011339 -173513239 - L1M3 LINE L1 -750 5430 5201 * 3243 187 28 24 chr3 54011337 54011957 -173512621 + L1PB4 LINE L1 3149 3765 -2391 1707 126 115 0 chr3 54011957 54012226 -173512352 + AluSg1 SINE Alu 1 300 -9 3243 187 28 24 chr3 54012226 54012972 -173511606 + L1PB4 LINE L1 3765 5930 -226 2278 167 40 15 chr3 54012994 54013396 -173511182 - LTR3 LTR ERVK -16 416 5 49806 114 13 6 chr3 54013400 54018563 -173506015 - HERVK3 LTR ERVK 0 7243 2015 2477 85 0 0 chr3 54018563 54018868 -173505710 + AluY SINE Alu 1 305 -6 49806 114 13 6 chr3 54018868 54020857 -173503721 - HERVK3 LTR ERVK -5228 2015 41 2327 144 47 25 chr3 54020880 54021283 -173503295 - LTR3 LTR ERVK -16 416 5 320 260 21 0 chr3 54021287 54021383 -173503195 + L1PB4 LINE L1 5925 6022 -134 1809 141 0 4 chr3 54021386 54021656 -173502922 - LOR1b LTR ERV1 0 461 193 3246 159 46 17 chr3 54021910 54022514 -173502064 + LTR26E LTR ERV1 1 622 0 351 320 29 17 chr3 54022638 54022810 -173501768 - MIR SINE MIR -60 202 29 1024 107 0 0 chr3 54023024 54023155 -173501423 - AluSq/x SINE Alu -181 131 1 1890 238 25 62 chr3 54023248 54023281 -173501297 + L1ME1 LINE L1 5551 5584 -582 2003 138 0 44 chr3 54023281 54023600 -173500978 - AluJb SINE Alu -7 305 1 1890 238 25 62 chr3 54023600 54023940 -173500638 + L1ME1 LINE L1 5584 5894 -272 523 276 8 15 chr3 54023940 54024074 -173500504 - FLAM_A SINE Alu 0 133 1 1890 238 25 62 chr3 54024074 54024326 -173500252 + L1ME1 LINE L1 5894 6154 -12 1102 196 57 112 chr3 54024326 54024685 -173499893 + MLT2C1 LTR ERVL 1 335 -62 861 89 20 0 chr3 54024685 54024831 -173499747 + (TCTA)n Simple_repeat Simple_repeat 2 150 0 1102 196 57 112 chr3 54024831 54024889 -173499689 + MLT2C1 LTR ERVL 335 395 -2 255 183 0 33 chr3 54024892 54024952 -173499626 + ERVL-C1 LTR ERVL 2 59 -5705 1810 241 34 46 chr3 54025026 54025377 -173499201 + ERVL-C1 LTR ERVL 199 544 -5220 1801 144 3 58 chr3 54025377 54025689 -173498889 - AluJb SINE Alu -17 295 1 1810 241 34 46 chr3 54025689 54025838 -173498740 + ERVL-C1 LTR ERVL 544 693 -5071 2184 213 10 2 chr3 54025845 54026262 -173498316 + ERVL LTR ERVL 3436 3855 -1909 8836 162 36 46 chr3 54026679 54028368 -173496210 - ERVL LTR ERVL -74 5690 4019 968 285 78 43 chr3 54029098 54029494 -173495084 + LTR16B LTR ERVL 34 443 -21 565 175 265 0 chr3 54029710 54029876 -173494702 - MER63A DNA MER1_type 0 210 1 1492 261 61 30 chr3 54029950 54030425 -173494153 - LTR33 LTR ERVL -2 519 30 1772 175 0 10 chr3 54030706 54030997 -173493581 - AluJo SINE Alu -24 288 1 207 233 0 0 chr3 54031026 54031069 -173493509 - MIR SINE MIR -3 259 217 479 250 21 35 chr3 54031074 54031218 -173493360 + L2 LINE L2 3172 3313 0 1653 233 99 39 chr3 54031261 54031634 -173492944 + MLT1H1 LTR MaLR 3 467 -126 2336 103 3 0 chr3 54031634 54031946 -173492632 + AluSp SINE Alu 1 313 0 1653 233 99 39 chr3 54031946 54032080 -173492498 + MLT1H1 LTR MaLR 467 591 -2 267 157 0 0 chr3 54033005 54033056 -173491522 + CT-rich Low_complexity Low_complexity 4 54 0 2237 115 13 0 chr3 54033062 54033367 -173491211 - AluSc SINE Alu 0 309 1 318 235 12 12 chr3 54033427 54033508 -173491070 + MER5A DNA MER1_type 65 145 -44 430 309 135 0 chr3 54033544 54033722 -173490856 + MIR SINE MIR 12 213 -49 216 313 75 38 chr3 54033981 54034141 -173490437 - L2 LINE L2 -131 3141 2976 184 338 50 22 chr3 54034544 54034683 -173489895 - L2 LINE L2 -212 3060 2918 277 163 20 0 chr3 54034866 54034915 -173489663 - MLT1L LTR MaLR -9 606 557 286 271 0 65 chr3 54034974 54035082 -173489496 - MLT1L LTR MaLR -175 391 237 360 202 266 0 chr3 54035097 54035191 -173489387 + MER20 DNA MER1_type 1 119 -100 222 37 0 0 chr3 54035605 54035632 -173488946 + (TG)n Simple_repeat Simple_repeat 1 27 0 1469 213 48 20 chr3 54035777 54036274 -173488304 + L1MC/D LINE L1 2840 3350 -2796 1349 129 34 34 chr3 54036281 54036514 -173488064 - Tigger2a DNA MER2_type 0 444 212 4930 194 35 10 chr3 54036520 54037859 -173486719 - L1PB4 LINE L1 -2890 3958 2584 9901 162 19 40 chr3 54037860 54039060 -173485518 + L1PB4 LINE L1 3958 5182 -1676 1724 163 53 13 chr3 54039060 54039360 -173485218 + AluJb SINE Alu 1 312 0 9901 162 19 40 chr3 54039360 54040137 -173484441 + L1PB4 LINE L1 5182 5868 -990 1882 153 37 3 chr3 54040137 54040431 -173484147 + AluSx SINE Alu 2 305 -7 9901 162 19 40 chr3 54040431 54040976 -173483602 + L1PB4 LINE L1 5868 6423 -435 302 95 349 16 chr3 54040973 54041036 -173483542 + L1MA4 LINE L1 5783 5866 -434 * 767 137 0 8 chr3 54041036 54041153 -173483425 - AluJb SINE Alu -2 310 195 1753 150 14 7 chr3 54041154 54041434 -173483144 + L1PB4 LINE L1 6562 6843 -15 1282 145 4 48 chr3 54041434 54041661 -173482917 - Tigger2a DNA MER2_type -217 217 1 579 311 22 4 chr3 54041661 54041886 -173482692 + L1MC/D LINE L1 3349 3577 -2569 * 2159 205 36 64 chr3 54041872 54042852 -173481726 + L1MC/D LINE L1 4672 5618 -624 308 106 21 0 chr3 54042852 54042899 -173481679 - MLT2B3 LTR ERVL 0 554 507 236 118 12 188 chr3 54042903 54042988 -173481590 - MER5B DNA MER1_type -108 70 1 223 180 20 20 chr3 54043257 54043307 -173481271 + MIR SINE MIR 97 146 -116 1074 198 36 122 chr3 54043757 54043972 -173480606 + LTR56 LTR ERV1 10 242 -195 3234 123 61 20 chr3 54043972 54044478 -173480100 + MER1A DNA MER1_type 1 527 0 1074 198 36 122 chr3 54044478 54044605 -173479973 + LTR56 LTR ERV1 242 266 -171 2178 115 0 3 chr3 54044605 54044917 -173479661 + L1PA16 LINE L1 5847 6157 -9 1074 198 36 122 chr3 54044917 54045071 -173479507 + LTR56 LTR ERV1 266 432 -5 496 145 0 0 chr3 54046955 54047031 -173477547 + AluJ/FRAM SINE Alu 230 305 -7 1175 147 0 0 chr3 54047236 54047406 -173477172 + AluSg/x SINE Alu 134 303 -9 425 336 56 42 chr3 54047773 54048222 -173476356 + LTR56-int LTR ERV1 2105 2559 -2088 1465 174 8 0 chr3 54048519 54048777 -173475801 - L1PA16 LINE L1 0 6166 5907 269 272 0 39 chr3 54048822 54048925 -173475653 + LTR56-int LTR ERV1 2756 2854 -1793 198 103 0 0 chr3 54049224 54049253 -173475325 + (CA)n Simple_repeat Simple_repeat 2 30 0 1847 183 3 0 chr3 54049302 54049613 -173474965 - AluJo SINE Alu 0 312 1 268 360 25 25 chr3 54049653 54049814 -173474764 + MER70-int LTR ERVL 3641 3801 -1222 450 220 43 127 chr3 54050668 54051072 -173473506 + LTR56-int LTR ERV1 4644 5919 -85 1274 164 66 114 chr3 54051147 54051473 -173473105 + LTR56 LTR ERV1 12 311 -134 1963 142 0 7 chr3 54051473 54051782 -173472796 + L1PA16 LINE L1 5850 6156 -10 1274 164 66 114 chr3 54051782 54051911 -173472667 + LTR56 LTR ERV1 311 445 0 26 0 0 0 chr3 54052025 54052051 -173472527 + AT_rich Low_complexity Low_complexity 1 26 0 426 229 9 9 chr3 54052094 54052199 -173472379 - MIR SINE MIR -97 165 61 360 138 126 0 chr3 54052620 54052707 -173471871 + MER5A DNA MER1_type 15 112 -77 344 267 52 0 chr3 54052784 54052900 -173471678 + LTR16A1 LTR ERVL 3 124 -333 450 263 40 0 chr3 54052908 54053060 -173471518 + MER5B DNA MER1_type 20 177 -1 711 232 105 54 chr3 54053065 54053380 -173471198 + LTR16A1 LTR ERVL 127 457 0 229 274 147 0 chr3 54053915 54054010 -173470568 - MIR SINE MIR 0 262 154 544 211 56 93 chr3 54054024 54054185 -173470393 - MLT1H1 LTR MaLR 0 555 422 493 226 51 17 chr3 54054293 54054455 -173470123 - MLT1H LTR MaLR -371 178 25 276 333 0 0 chr3 54054495 54054573 -173470005 - MIR SINE MIR -179 83 6 800 199 25 10 chr3 54054945 54055146 -173469432 + MER33 DNA MER1_type 52 255 -69 887 175 7 0 chr3 54055154 54055297 -173469281 - FRAM SINE Alu -37 139 1 366 174 0 82 chr3 54055297 54055336 -173469242 + MER33 DNA MER1_type 274 315 -2309 2286 87 0 23 chr3 54055336 54055635 -173468943 - AluSg SINE Alu -18 292 1 366 174 0 82 chr3 54055635 54055693 -173468885 + MER33 DNA MER1_type 315 363 0 216 298 26 18 chr3 54056769 54056893 -173467685 + MIR SINE MIR 30 152 -63 671 160 69 8 chr3 54056893 54057024 -173467554 - MLT1F LTR MaLR -2 540 402 666 238 26 0 chr3 54057030 54057181 -173467397 - MLT1F LTR MaLR -308 234 80 453 182 23 0 chr3 54057464 54057552 -173467026 - MLT1F LTR MaLR -505 90 1 339 270 69 38 chr3 54057655 54057814 -173466764 - MIR3 SINE MIR -21 187 24 275 169 48 133 chr3 54057859 54057942 -173466636 + MLT1L LTR MaLR 39 114 -501 386 232 64 24 chr3 54058067 54058192 -173466386 + MLT1L LTR MaLR 476 605 -10 1271 186 137 55 chr3 54058647 54059013 -173465565 - MSTD LTR MaLR 0 396 1 594 287 76 81 chr3 54061645 54061908 -173462670 + MLT1K LTR MaLR 144 406 -182 1407 181 55 79 chr3 54061908 54062289 -173462289 + MLT1A2 LTR MaLR 1 372 -2 594 287 76 81 chr3 54062289 54062433 -173462145 + MLT1K LTR MaLR 406 549 -39 2270 90 30 0 chr3 54062433 54062734 -173461844 - AluY SINE Alu -1 310 1 594 133 0 53 chr3 54063527 54063640 -173460938 - L1PA16 LINE L1 -1 6165 6059 296 322 158 0 chr3 54063726 54063872 -173460706 + MER5A DNA MER1_type 14 182 -7 266 151 75 0 chr3 54063876 54063929 -173460649 + MLT1J LTR MaLR 445 501 -10 236 244 22 78 chr3 54064947 54065037 -173459541 - MER5A DNA MER1_type -97 92 8 531 259 60 106 chr3 54065875 54065901 -173458677 - HAL1 LINE L1 -991 1516 1490 1829 134 22 0 chr3 54065901 54066170 -173458408 - AluSq SINE Alu -3 310 36 531 259 60 106 chr3 54066170 54066670 -173457908 - HAL1 LINE L1 -1017 1490 1025 2108 89 11 0 chr3 54066670 54066940 -173457638 - AluSc SINE Alu -7 302 30 531 259 60 106 chr3 54066940 54067079 -173457499 - HAL1 LINE L1 -1482 1025 881 883 124 69 0 chr3 54067368 54067513 -173457065 + L1PB1 LINE L1 5994 6148 -3 404 273 19 54 chr3 54068443 54068648 -173455930 + MIR3 SINE MIR 3 200 -8 1004 266 116 20 chr3 54068975 54069182 -173455396 - MLT1G LTR MaLR 0 595 409 541 0 29 0 chr3 54069182 54069251 -173455327 + (TCTA)n Simple_repeat Simple_repeat 3 73 0 1004 266 116 20 chr3 54069251 54069532 -173455046 - MLT1G LTR MaLR -186 409 3 253 269 99 36 chr3 54069732 54069893 -173454685 + MIR SINE MIR 24 192 -70 2213 97 23 19 chr3 54070165 54070474 -173454104 - AluSg SINE Alu 0 310 1 2270 85 0 3 chr3 54070802 54071136 -173453442 - AluY SINE Alu 0 333 1 325 246 12 0 chr3 54072450 54072621 -173451957 + (TG)n Simple_repeat Simple_repeat 2 174 0 483 227 97 19 chr3 54072683 54072837 -173451741 + L1ME4a LINE L1 5494 5659 -462 791 218 125 14 chr3 54072938 54073154 -173451424 - MIR SINE MIR -21 241 2 249 261 126 0 chr3 54073227 54073338 -173451240 + L1ME4a LINE L1 5872 5996 -125 292 151 0 0 chr3 54073362 54073415 -173451163 - L1MB8 LINE L1 -6 6172 6120 1876 146 12 51 chr3 54073416 54073751 -173450827 - Tigger1 DNA MER2_type 0 2418 2097 1040 206 9 9 chr3 54073742 54073956 -173450622 + Tigger1 DNA MER2_type 1893 2106 -312 * 1555 105 14 0 chr3 54073985 54074194 -173450384 + AluJb SINE Alu 86 297 -15 1853 213 148 18 chr3 54075127 54075755 -173448823 + MER67C LTR ERV1 1 710 0 816 252 169 28 chr3 54077375 54077841 -173446737 + MLT1H LTR MaLR 3 548 -1 1699 322 47 50 chr3 54078511 54079738 -173444840 - BaEV-int LTR ERV1 -138 6511 5290 2357 334 43 27 chr3 54080454 54082057 -173442521 - BaEV-int LTR ERV1 -2029 5756 4128 1976 324 39 31 chr3 54082099 54083391 -173441187 - BaEV-int LTR ERV1 -3673 4112 1009 1009 338 34 19 chr3 54083387 54084071 -173440507 - BaEV-int LTR ERV1 -4990 1659 966 * 578 232 88 10 chr3 54084695 54084889 -173439689 - BaEV-int LTR ERV1 -6279 370 162 315 239 14 87 chr3 54085504 54085642 -173438936 - L1M4 LINE L1 -1089 5057 4930 397 223 100 8 chr3 54085678 54085808 -173438770 - L1ME4a LINE L1 -14 6107 5966 763 279 101 14 chr3 54085809 54086175 -173438403 - L1ME4a LINE L1 -187 5934 5537 193 311 67 34 chr3 54086719 54086838 -173437740 - L2 LINE L2 -191 3081 2959 988 270 85 75 chr3 54087000 54087504 -173437074 + L2 LINE L2 2805 3313 0 283 277 76 58 chr3 54087740 54087964 -173436614 - L2 LINE L2 -816 2498 2271 3320 204 78 31 chr3 54088376 54088600 -173435978 - L1MD2 LINE L1 -15 6344 6132 1568 159 4 12 chr3 54088600 54088845 -173435733 - AluJo SINE Alu -21 291 49 3320 204 78 31 chr3 54088845 54089623 -173434955 - L1MD2 LINE L1 -227 6132 5239 3087 80 68 2 chr3 54089623 54090006 -173434572 + MLT2A2 LTR ERVL 1 416 -37 206 32 32 0 chr3 54090006 54090037 -173434541 + (TA)n Simple_repeat Simple_repeat 1 32 0 3087 80 68 2 chr3 54090037 54090078 -173434500 + MLT2A2 LTR ERVL 416 453 0 3320 204 78 31 chr3 54090078 54090122 -173434456 - L1MD2 LINE L1 -1120 5239 5199 422 182 109 18 chr3 54090122 54090232 -173434346 - L1M4 LINE L1 -1185 4961 4842 285 125 0 0 chr3 54090232 54090280 -173434298 - HSMAR2 DNA Mariner -1 1301 1254 1617 122 13 0 chr3 54090282 54090506 -173434072 - HSMAR2 DNA Mariner -191 1111 885 2745 168 71 14 chr3 54090506 54091146 -173433432 + MER50 LTR ERV1 1 734 0 * 2750 85 57 8 chr3 54091146 54091525 -173433053 - HSMAR2 DNA Mariner -414 888 491 347 205 128 120 chr3 54091529 54091832 -173432746 - LTR49 LTR ERV1 -286 309 23 * 360 137 0 0 chr3 54091803 54091854 -173432724 - MER39 LTR ERV1 -656 51 1 1148 169 105 56 chr3 54091856 54092122 -173432456 + MER31-int LTR ERV1 3783 4061 -875 364 135 0 0 chr3 54092126 54092184 -173432394 - Alu SINE Alu -248 52 2 1039 147 47 39 chr3 54092185 54092417 -173432161 - L1MDa LINE L1 -5263 1277 1044 * 8195 204 48 17 chr3 54092408 54094215 -173430363 + L1MB3 LINE L1 3000 4876 -1270 1685 185 63 44 chr3 54094215 54094598 -173429980 + MLT1B LTR MaLR 1 390 0 8195 204 48 17 chr3 54094598 54094779 -173429799 + L1MB3 LINE L1 4876 5050 -1096 2236 108 0 10 chr3 54094782 54095096 -173429482 + AluY SINE Alu 1 311 0 5203 134 26 8 chr3 54095096 54095286 -173429292 + L1MB3 LINE L1 5295 5480 -703 318 50 0 0 chr3 54095286 54095326 -173429252 + (CA)n Simple_repeat Simple_repeat 2 41 0 5203 134 26 8 chr3 54095326 54095976 -173428602 + L1MB3 LINE L1 5480 6153 -30 243 0 0 0 chr3 54095976 54096003 -173428575 + (TA)n Simple_repeat Simple_repeat 2 28 0 324 133 0 33 chr3 54096015 54096075 -173428503 - L1MDa LINE L1 -5481 1059 1002 211 313 50 0 chr3 54096718 54096817 -173427761 - MIR SINE MIR -128 134 31 203 286 83 0 chr3 54097018 54097102 -173427476 - L2 LINE L2 -46 3226 3136 1170 199 80 84 chr3 54097887 54098339 -173426239 + L1MC4 LINE L1 7586 8035 -7 584 224 135 91 chr3 54099493 54099909 -173424669 + MLT1G1 LTR MaLR 89 522 -27 448 278 68 17 chr3 54100125 54100301 -173424277 - MIR3 SINE MIR -8 200 16 242 295 42 11 chr3 54100417 54100512 -173424066 - MIR SINE MIR -118 144 47 442 219 21 0 chr3 54101905 54102001 -173422577 - Charlie8 DNA MER1_type -2236 181 84 279 320 69 46 chr3 54102219 54102748 -173421830 + L2 LINE L2 2538 3077 -195 1034 156 4 61 chr3 54102755 54102986 -173421592 - L1MB7 LINE L1 0 6184 5967 2543 206 44 51 chr3 54103117 54104160 -173420418 - L1MDa LINE L1 -3264 3276 2235 2585 56 0 31 chr3 54104160 54104481 -173420097 - AluY SINE Alu 0 311 1 2543 206 44 51 chr3 54104481 54104631 -173419947 - L1MDa LINE L1 -4305 2235 2085 231 174 0 0 chr3 54104631 54104677 -173419901 + LTR66 LTR ERVL 394 439 -171 231 218 0 0 chr3 54104692 54104747 -173419831 - L1MC4 LINE L1 -1340 6702 6648 1022 84 8 0 chr3 54104870 54105001 -173419577 - AluSg SINE Alu -178 132 1 244 263 121 0 chr3 54105733 54105832 -173418746 + MIR SINE MIR 39 149 -113 438 144 124 31 chr3 54106035 54106132 -173418446 + MER103 DNA DNA 13 118 -48 2002 132 11 0 chr3 54106705 54106985 -173417593 - AluSx SINE Alu -25 287 5 1051 246 51 81 chr3 54107100 54107567 -173417011 + L1MDa LINE L1 18 470 -6070 265 179 55 64 chr3 54108251 54108367 -173416211 + L1MDa LINE L1 582 850 -5690 1275 130 10 0 chr3 54108420 54108729 -173415849 + (GAA)n Simple_repeat Simple_repeat 1 313 0 2746 208 106 31 chr3 54108729 54108849 -173415729 + L1MDa LINE L1 1003 1113 -5427 2576 11 0 0 chr3 54108849 54109126 -173415452 + AluYa5 SINE Alu 34 310 -1 2746 208 106 31 chr3 54109126 54109907 -173414671 + L1MDa LINE L1 1113 1972 -4568 2379 185 92 2 chr3 54110018 54110678 -173413900 - L1M4 LINE L1 -418 5766 5064 195 286 133 41 chr3 54111129 54111227 -173413351 - L2 LINE L2 -39 3233 3127 449 291 6 28 chr3 54111229 54111411 -173413167 + (CATA)n Simple_repeat Simple_repeat 1 178 0 * 468 308 0 27 chr3 54111279 54111464 -173413114 + (CA)n Simple_repeat Simple_repeat 1 180 0 252 298 0 46 chr3 54111436 54111567 -173413011 + (CATA)n Simple_repeat Simple_repeat 1 125 0 * 232 250 16 0 chr3 54111576 54111704 -173412874 + (CA)n Simple_repeat Simple_repeat 1 130 0 208 264 129 29 chr3 54111761 54111901 -173412677 - MIR SINE MIR 0 262 109 286 167 50 0 chr3 54112012 54112072 -173412506 + Charlie7 DNA MER1_type 38 100 -2512 267 31 0 0 chr3 54112243 54112275 -173412303 + (CA)n Simple_repeat Simple_repeat 2 33 0 1918 130 0 0 chr3 54113796 54114092 -173410486 + AluSx SINE Alu 21 316 0 211 208 0 39 chr3 54114690 54114767 -173409811 + (TGAA)n Simple_repeat Simple_repeat 3 76 0 614 219 62 7 chr3 54115752 54115898 -173408680 - MIR SINE MIR -27 235 82 23 33 0 0 chr3 54116039 54116069 -173408509 + AT_rich Low_complexity Low_complexity 1 30 0 608 234 101 40 chr3 54116175 54116453 -173408125 + L1ME LINE L1 5259 5553 -568 524 266 89 16 chr3 54116851 54117179 -173407399 + L1ME LINE L1 5485 5884 -237 2326 224 109 0 chr3 54117304 54117826 -173406752 + MER119 DNA MER1_type 5 583 0 556 273 83 87 chr3 54117829 54118441 -173406137 - MLT2F LTR ERVL -53 610 1 1689 149 14 21 chr3 54118508 54118790 -173405788 - AluJo SINE Alu -22 290 11 257 307 10 20 chr3 54118846 54118947 -173405631 + GA-rich Low_complexity Low_complexity 2 101 0 200 217 67 50 chr3 54119250 54119310 -173405268 + MIR SINE MIR 90 150 -58 234 231 39 0 chr3 54119530 54119582 -173404996 + AluSp SINE Alu 117 170 -133 1606 147 0 0 chr3 54119589 54119820 -173404758 + AluJb SINE Alu 67 297 -15 819 256 72 0 chr3 54120476 54120671 -173403907 - MER63A DNA MER1_type -1 209 1 1480 219 42 3 chr3 54120746 54121107 -173403471 + L1MB7 LINE L1 4931 5305 -841 1777 103 4 19 chr3 54121119 54121380 -173403198 + L1PA15 LINE L1 5909 6165 0 1015 171 76 32 chr3 54121385 54121636 -173402942 + L1MA7 LINE L1 6026 6287 -4 * 3217 209 41 23 chr3 54121631 54122054 -173402524 + L1MB7 LINE L1 5291 5734 -450 1913 148 57 33 chr3 54122054 54122420 -173402158 + THE1C LTR MaLR 1 375 0 3217 209 41 23 chr3 54122420 54122732 -173401846 + L1MB7 LINE L1 5734 6039 -145 216 97 0 0 chr3 54122732 54122763 -173401815 + (T)n Simple_repeat Simple_repeat 1 31 0 736 229 93 90 chr3 54122913 54123223 -173401355 + L1MEc LINE L1 683 965 -5105 413 217 0 0 chr3 54123250 54123319 -173401259 - Tigger7 DNA MER2_type -10 2477 2409 2332 182 30 2 chr3 54123338 54123734 -173400844 - Tigger7 DNA MER2_type -326 407 1 2469 274 111 34 chr3 54123780 54124800 -173399778 + L1MEc LINE L1 1089 2029 -4051 8037 122 29 17 chr3 54124800 54126017 -173398561 + Tigger3b DNA MER2_type 1 1231 0 2469 274 111 34 chr3 54126017 54126896 -173397682 + L1MEc LINE L1 2029 3096 -2984 1863 261 113 11 chr3 54127181 54127272 -173397306 + L1MC4 LINE L1 6458 6538 -1504 2203 113 0 0 chr3 54127272 54127565 -173397013 + AluSg SINE Alu 1 293 -17 1863 261 113 11 chr3 54127565 54127658 -173396920 + L1MC4 LINE L1 6538 6620 -1422 194 0 39 0 chr3 54127658 54127684 -173396894 + (TG)n Simple_repeat Simple_repeat 2 28 0 1863 261 113 11 chr3 54127684 54128118 -173396460 + L1MC4 LINE L1 6620 7140 -902 1930 207 85 96 chr3 54128119 54128858 -173395720 + L1MC4 LINE L1 7296 8026 -16 340 281 0 0 chr3 54129040 54129122 -173395456 - MIR SINE MIR -71 191 110 8216 20 0 0 chr3 54129262 54130324 -173394254 - L1PA3 LINE L1 -11 6144 5082 252 0 0 0 chr3 54131551 54131579 -173392999 + (A)n Simple_repeat Simple_repeat 1 28 0 365 276 26 69 chr3 54133981 54134213 -173390365 + L3 LINE CR1 682 903 -674 285 287 21 21 chr3 54134660 54134754 -173389824 + L3 LINE CR1 1422 1515 -62 296 218 61 97 chr3 54134949 54135114 -173389464 + L1ME4a LINE L1 5963 6121 0 276 260 0 102 chr3 54135988 54136115 -173388463 + L1ME4a LINE L1 5950 6063 -58 27 0 0 0 chr3 54136381 54136408 -173388170 + AT_rich Low_complexity Low_complexity 1 27 0 299 288 110 34 chr3 54138588 54138706 -173385872 - L2 LINE L2 -1 3271 3145 409 279 47 29 chr3 54138877 54139049 -173385529 - MIR SINE MIR -86 176 2 411 191 138 53 chr3 54139166 54139318 -173385260 + MER20 DNA MER1_type 5 169 -50 266 254 37 90 chr3 54139337 54139471 -173385107 - MIR3 SINE MIR -42 166 40 435 275 55 0 chr3 54139786 54139895 -173384683 + MIR SINE MIR 68 182 -80 1032 215 67 5 chr3 54141144 54141339 -173383239 - MER63A DNA MER1_type -3 207 1 2215 96 10 0 chr3 54141813 54142104 -173382474 - AluSc SINE Alu -15 294 1 399 296 140 11 chr3 54143214 54143400 -173381178 + MIR SINE MIR 52 261 -1 281 316 25 0 chr3 54143525 54143604 -173380974 + MIR3 SINE MIR 85 165 -43 471 291 43 0 chr3 54143850 54143991 -173380587 - L2 LINE L2 -5 3308 3162 872 217 17 11 chr3 54144089 54144269 -173380309 + MER5A DNA MER1_type 1 181 -8 261 230 54 0 chr3 54146175 54146249 -173378329 + L2 LINE L2 623 700 -2614 226 269 51 26 chr3 54146263 54146341 -173378237 - MLT1H LTR MaLR -15 534 455 646 288 79 30 chr3 54146372 54146639 -173377939 - MLT1H LTR MaLR -214 335 56 2940 259 80 11 chr3 54146694 54147598 -173376980 + L2 LINE L2 698 1663 -1651 322 203 116 0 chr3 54147599 54147668 -173376910 - MLT1L LTR MaLR -118 497 421 694 227 153 0 chr3 54148431 54148594 -173375984 + MER5A DNA MER1_type 2 189 0 356 256 198 8 chr3 54148624 54148745 -173375833 + MER5A DNA MER1_type 46 189 0 616 298 29 19 chr3 54149122 54149330 -173375248 + L1MC/D LINE L1 5495 5704 -2104 4812 158 72 12 chr3 54149487 54151160 -173373418 + L1PB1 LINE L1 2146 3920 -2942 219 200 153 71 chr3 54151421 54151506 -173373072 - L2 LINE L2 -2 3270 3179 802 153 31 71 chr3 54152163 54152359 -173372219 + MER3 DNA MER1_type 1 188 -21 1450 241 58 15 chr3 54152642 54153041 -173371537 - LTR16C LTR ERVL -3 488 73 1223 202 28 0 chr3 54153550 54153768 -173370810 + MER58A DNA MER1_type 1 224 0 10303 176 5 13 chr3 54154540 54157507 -173367071 + L1PB1 LINE L1 3929 6867 0 587 172 25 98 chr3 54157588 54157751 -173366827 - MER63 DNA MER1_type -285 777 1 346 281 25 56 chr3 54159161 54159321 -173365257 + MIR SINE MIR 60 214 -48 1913 120 45 0 chr3 54159556 54159823 -173364755 + AluSg SINE Alu 1 279 -31 186 43 0 0 chr3 54159826 54159849 -173364729 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 219 340 31 67 chr3 54159861 54160055 -173364523 + L2 LINE L2 3081 3267 -5 181 206 16 32 chr3 54160064 54160127 -173364451 + (TATG)n Simple_repeat Simple_repeat 1 62 0 638 250 0 88 chr3 54160518 54160778 -173363800 + L1M3 LINE L1 5258 5494 -686 1029 90 0 41 chr3 54160799 54160940 -173363638 + AluSq/x SINE Alu 1 136 -174 2318 97 10 0 chr3 54160940 54161240 -173363338 + AluSx SINE Alu 1 303 -9 1408 253 196 13 chr3 54161273 54161794 -173362784 + L1ME2 LINE L1 5485 6100 -64 316 120 0 20 chr3 54161862 54161912 -173362666 + AluSp SINE Alu 131 179 -124 2035 175 20 0 chr3 54161921 54162318 -173362260 - L1MC/D LINE L1 -725 5634 5229 3782 204 70 32 chr3 54162319 54163340 -173361238 - L1MC/D LINE L1 -1151 4995 3937 1927 120 0 45 chr3 54163359 54163668 -173360910 - AluSx SINE Alu -17 295 1 1890 231 55 61 chr3 54163735 54164458 -173360120 - L1MC/D LINE L1 -2757 3389 2671 434 294 128 11 chr3 54165349 54165536 -173359042 + MIR SINE MIR 17 225 -37 734 273 127 33 chr3 54165747 54166110 -173358468 + MLT1J1 LTR MaLR 50 446 0 590 280 37 37 chr3 54166217 54166435 -173358143 + L1ME1 LINE L1 5943 6160 -6 371 309 23 55 chr3 54166501 54166721 -173357857 - LTR16A1 LTR ERVL -31 426 214 365 347 47 19 chr3 54167195 54167408 -173357170 + MIR SINE MIR 9 227 -35 2224 97 10 13 chr3 54167641 54167951 -173356627 - AluSc SINE Alu 0 309 1 1358 203 51 25 chr3 54168219 54168534 -173356044 + L1MA10 LINE L1 6011 6333 -1 229 231 19 0 chr3 54169232 54169284 -173355294 - LTR16B LTR ERVL -276 188 136 374 171 14 0 chr3 54169564 54169634 -173354944 - AluS SINE Alu -5 297 227 1968 202 117 24 chr3 54169932 54170392 -173354186 - MLT1D LTR MaLR 0 505 3 1557 145 61 34 chr3 54171622 54171721 -173352857 + L1MA9 LINE L1 6003 6098 -214 2433 130 3 9 chr3 54171721 54172059 -173352519 - MER1B DNA MER1_type -1 336 1 1557 145 61 34 chr3 54172059 54172255 -173352323 + L1MA9 LINE L1 6098 6306 -6 2036 156 46 3 chr3 54172260 54172626 -173351952 + L1MC3 LINE L1 7195 7576 -209 * 31644 32 5 3 chr3 54172624 54177257 -173347321 + L1PA3 LINE L1 1697 6154 -1 234 0 0 0 chr3 54177257 54177283 -173347295 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2281 68 0 0 chr3 54177286 54177564 -173347014 - AluY SINE Alu -24 287 10 318 272 37 0 chr3 54177972 54178053 -173346525 - L2 LINE L2 0 3313 3230 1841 137 22 53 chr3 54178241 54178562 -173346016 - AluSx SINE Alu -1 311 1 274 236 112 22 chr3 54179442 54179531 -173345047 + L2 LINE L2 3201 3297 -16 1383 212 25 93 chr3 54180030 54180847 -173343731 - L1MD2 LINE L1 -183 5983 4375 1695 148 8 4 chr3 54180861 54181124 -173343454 - L1MC1 LINE L1 0 6333 6070 493 50 0 0 chr3 54181124 54181184 -173343394 - L1P LINE L1 -4328 1818 1759 284 272 11 11 chr3 54181183 54181275 -173343303 - L1MC1 LINE L1 -258 6075 5984 * 8918 137 6 21 chr3 54181334 54183556 -173341022 - L1PA12 LINE L1 0 7606 5423 2041 140 0 3 chr3 54183558 54183851 -173340727 - AluSx SINE Alu -18 294 3 14317 217 31 19 chr3 54183854 54188811 -173335767 - L1PA12 LINE L1 -2264 5320 1 20266 177 14 11 chr3 54188827 54192584 -173331994 - L1PA13 LINE L1 -7 6807 3020 2184 99 7 3 chr3 54192584 54192886 -173331692 - AluY SINE Alu -8 303 1 20266 177 14 11 chr3 54192886 54194380 -173330198 - L1PA13 LINE L1 -3794 3020 1532 2620 246 46 11 chr3 54195337 54196284 -173328294 - L1 LINE L1 -1821 4325 3323 1336 169 102 28 chr3 54196302 54196557 -173328021 - AluJo SINE Alu -16 296 23 359 185 34 17 chr3 54196559 54196678 -173327900 - L1 LINE L1 -2905 3241 3121 4910 159 33 32 chr3 54196686 54197777 -173326801 - L1MA9 LINE L1 -4 6296 5133 251 111 0 89 chr3 54197777 54197822 -173326756 - Alu SINE Alu -15 285 245 4910 159 33 32 chr3 54197822 54198012 -173326566 - L1MA9 LINE L1 -1167 5133 4945 * 21326 84 5 20 chr3 54198003 54198650 -173325928 - L1P LINE L1 -2267 3879 3224 8079 30 1 0 chr3 54198650 54200081 -173324497 - L1PA4 LINE L1 -3 6152 4720 21326 84 5 20 chr3 54200081 54202495 -173322083 - L1P LINE L1 -2922 3224 865 1273 186 54 34 chr3 54202495 54202645 -173321933 - L1MA9 LINE L1 -2882 3264 3118 1666 191 3 19 chr3 54202645 54202954 -173321624 - AluJo SINE Alu -2 310 7 1273 186 54 34 chr3 54202954 54203152 -173321426 - L1MA9 LINE L1 -3028 3118 2909 266 265 102 20 chr3 54203887 54203985 -173320593 - MIR SINE MIR -40 222 117 4809 135 23 1 chr3 54204081 54204783 -173319795 + LTR62 LTR ERVK 1 717 -2 2260 104 12 0 chr3 54205458 54205786 -173318792 - L1MA4A LINE L1 -400 5903 5572 * 2739 179 36 9 chr3 54205779 54206337 -173318241 - L1MA4A LINE L1 -846 5300 4728 551 310 13 18 chr3 54206366 54206595 -173317983 - HsTC2 DNA Tc2 -1050 848 621 983 229 50 27 chr3 54206630 54206892 -173317686 - L1ME LINE L1 -574 5592 5325 1799 205 38 0 chr3 54206917 54207259 -173317319 - LTR42 LTR ERVL -140 355 1 1176 216 66 22 chr3 54207262 54207582 -173316996 + L1ME1 LINE L1 5826 6159 -7 296 320 107 10 chr3 54208069 54208172 -173316406 + MIR SINE MIR 22 134 -74 222 323 110 12 chr3 54208881 54209045 -173315533 + L2 LINE L2 2910 3089 -183 582 309 57 5 chr3 54209181 54209391 -173315187 - MIR SINE MIR -23 239 19 238 217 17 17 chr3 54209575 54209635 -173314943 + CT-rich Low_complexity Low_complexity 2 61 0 183 42 0 0 chr3 54209653 54209677 -173314901 + (TC)n Simple_repeat Simple_repeat 2 25 0 262 327 9 18 chr3 54209842 54209952 -173314626 - L2 LINE L2 -5 3308 3200 411 319 58 15 chr3 54210049 54210243 -173314335 - MIR SINE MIR -56 206 3 1930 143 0 0 chr3 54210363 54210635 -173313943 + AluSx SINE Alu 27 298 -14 252 41 0 82 chr3 54211430 54211479 -173313099 + LTR66 LTR ERVL 395 439 -171 292 286 10 10 chr3 54211479 54211521 -173313057 + (TA)n Simple_repeat Simple_repeat 2 43 -56 1201 204 81 57 chr3 54211521 54211855 -173312723 + MER2 DNA MER2_type 2 343 -1 292 286 10 10 chr3 54211855 54211910 -173312668 + (TA)n Simple_repeat Simple_repeat 42 99 0 738 294 91 37 chr3 54212250 54212845 -173311733 + L1ME4a LINE L1 5282 5908 -213 3935 33 5 7 chr3 54212858 54213307 -173311271 - LTR7 LTR ERV1 -2 448 1 248 270 245 0 chr3 54213724 54213883 -173310695 - L3 LINE CR1 -109 1468 1271 225 0 0 0 chr3 54213989 54214014 -173310564 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 3162 69 34 0 chr3 54214044 54214462 -173310116 - L1PA14 LINE L1 -1 6160 5729 492 304 90 15 chr3 54214462 54214652 -173309926 - L3 LINE CR1 -342 1235 1028 241 354 0 0 chr3 54214664 54214729 -173309849 - L2 LINE L2 -1 3271 3207 3749 49 0 7 chr3 54214761 54215212 -173309366 - LTR7 LTR ERV1 -2 448 1 2607 76 45 13 chr3 54215212 54215592 -173308986 - HERVH LTR ERV1 0 7713 7322 1460 113 18 9 chr3 54215590 54215811 -173308767 - HERVH LTR ERV1 -1894 5819 5597 * 4369 137 0 22 chr3 54215808 54216485 -173308093 - HERVH LTR ERV1 -2564 5149 4488 3448 117 0 6 chr3 54216487 54216992 -173307586 - HERVH LTR ERV1 -3720 3993 3492 904 135 20 0 chr3 54216982 54217130 -173307448 - HERVH LTR ERV1 -4423 3290 3140 * 21074 90 14 7 chr3 54217124 54220093 -173304485 - HERVH LTR ERV1 -4726 2987 1 3571 65 0 22 chr3 54220095 54220553 -173304025 - LTR7 LTR ERV1 -2 448 1 761 142 107 77 chr3 54220557 54220657 -173303921 - MER3 DNA MER1_type -28 181 73 2106 136 0 10 chr3 54220657 54220966 -173303612 - AluSx SINE Alu -6 306 1 761 142 107 77 chr3 54220966 54221034 -173303544 - MER3 DNA MER1_type -136 73 8 196 323 111 0 chr3 54221223 54221322 -173303256 - L3 LINE CR1 -550 1027 918 640 311 163 29 chr3 54221415 54221454 -173303124 - L3 LINE CR1 -11 1566 1534 734 251 41 0 chr3 54221454 54221625 -173302953 - MER5B DNA MER1_type 0 178 1 640 311 163 29 chr3 54221625 54222112 -173302466 - L3 LINE CR1 -43 1534 969 397 116 0 0 chr3 54222202 54222271 -173302307 - L1PA15 LINE L1 -4 6161 6093 391 265 120 0 chr3 54222288 54222405 -173302173 + L1MC4a LINE L1 5736 5866 -1942 618 190 82 19 chr3 54222793 54222951 -173301627 - MER95 LTR ERV 0 431 264 4543 153 8 5 chr3 54222987 54224599 -173299979 - L1PB1 LINE L1 -10 6141 4440 1238 167 18 4 chr3 54224599 54224827 -173299751 - MER95 LTR ERV -160 271 41 5632 148 27 72 chr3 54224828 54225986 -173298592 - Ricksha_c DNA DNA -2 2044 939 304 248 266 0 chr3 54225993 54226102 -173298476 - L2 LINE L2 -979 2335 2198 5347 141 92 1 chr3 54226115 54226975 -173297603 - Ricksha_c DNA DNA -1101 945 8 352 78 0 20 chr3 54226982 54227033 -173297545 - MER95 LTR ERV -381 50 1 515 266 102 62 chr3 54227033 54227356 -173297222 - MER41-int LTR ERV1 -490 7326 6991 260 235 15 0 chr3 54227505 54227573 -173297005 - MER41-int LTR ERV1 -941 3930 3862 * 534 236 16 8 chr3 54227551 54227674 -173296904 - MER41-int LTR ERV1 -441 5890 5767 1912 303 70 54 chr3 54227695 54228382 -173296196 - MER41-int LTR ERV1 -1602 3334 2637 2438 139 28 17 chr3 54228384 54228744 -173295834 - THE1B LTR MaLR 0 364 1 3201 71 2 0 chr3 54228744 54229140 -173295438 - THE1B-int LTR MaLR 0 1580 1184 498 205 43 133 chr3 54229271 54229561 -173295017 - MER41-int LTR ERV1 -2106 3840 2269 293 257 64 9 chr3 54229616 54229725 -173294853 + L1M4 LINE L1 4537 4651 -1495 1769 149 10 17 chr3 54231117 54231432 -173293146 - AluJb SINE Alu 0 312 13 193 318 124 0 chr3 54232154 54232283 -173292295 - MIR SINE MIR -57 205 61 191 375 10 48 chr3 54233024 54233128 -173291450 + MIR SINE MIR 44 143 -65 903 197 32 27 chr3 54235427 54235615 -173288963 - MER5A DNA MER1_type 0 189 1 323 382 48 51 chr3 54236122 54236496 -173288082 - L2 LINE L2 -39 3233 2861 1536 109 5 5 chr3 54236775 54236985 -173287593 + AluSc SINE Alu 1 210 -99 3941 208 114 16 chr3 54287626 54288552 -173236026 - L1MDa LINE L1 -5521 1019 3 465 316 21 127 chr3 54288867 54289338 -173235240 + L3 LINE CR1 327 747 -830 775 328 88 12 chr3 54289343 54289943 -173234635 + L1M4 LINE L1 4487 5132 -1014 2692 236 43 14 chr3 54290505 54291003 -173233575 + L1M4 LINE L1 2966 3495 -2651 2331 99 3 0 chr3 54291003 54291305 -173233273 + AluSg SINE Alu 1 303 -7 2692 236 43 14 chr3 54291305 54291546 -173233032 + L1M4 LINE L1 3495 3727 -2419 2326 103 73 18 chr3 54292494 54292834 -173231744 + THE1B LTR MaLR 1 359 -5 241 372 43 0 chr3 54293069 54293163 -173231415 + L2 LINE L2 3126 3223 -49 369 304 59 59 chr3 54293270 54293405 -173231173 + L2 LINE L2 3137 3271 -1 195 268 0 0 chr3 54293515 54293556 -173231022 - MER5A DNA MER1_type 0 189 149 391 260 16 32 chr3 54293692 54293815 -173230763 + MIR3 SINE MIR 65 185 -23 5331 186 41 26 chr3 54293847 54294518 -173230060 - L1MB3 LINE L1 0 6183 5524 2057 141 0 13 chr3 54294518 54294831 -173229747 - AluSx SINE Alu -3 309 1 5331 186 41 26 chr3 54294831 54295509 -173229069 - L1MB3 LINE L1 -659 5524 4858 594 0 0 0 chr3 54295509 54295575 -173229003 + (CTATT)n Simple_repeat Simple_repeat 5 70 0 5331 186 41 26 chr3 54295575 54296334 -173228244 - L1MB3 LINE L1 -1325 4858 4045 2467 71 0 0 chr3 54296542 54296838 -173227740 + AluY SINE Alu 1 296 -15 253 293 78 54 chr3 54297433 54297600 -173226978 - MIR3 SINE MIR -19 189 19 652 229 100 0 chr3 54297693 54297863 -173226715 + MER5A DNA MER1_type 3 189 0 254 287 49 19 chr3 54298298 54298406 -173226172 - MIR SINE MIR -80 128 13 996 171 34 6 chr3 54298525 54298701 -173225877 - MER5A DNA MER1_type 0 189 9 275 313 57 62 chr3 54299145 54299337 -173225241 + L2 LINE L2 2902 3092 -180 360 258 7 136 chr3 54299740 54299895 -173224683 - MLT2E LTR ERVL -456 172 38 297 318 45 9 chr3 54299963 54300073 -173224505 + L2 LINE L2 2797 2910 -404 2724 157 2 27 chr3 54300397 54300836 -173223742 - MSTC LTR MaLR 0 428 1 1725 156 17 14 chr3 54301229 54301524 -173223054 - MSTA LTR MaLR 0 428 133 2106 171 58 22 chr3 54301532 54301947 -173222631 + LTR3 LTR ERVK 1 430 -2 2085 134 11 33 chr3 54301953 54302312 -173222266 + HERVK3 LTR ERVK 1 351 -6892 2063 143 68 43 chr3 54302312 54302751 -173221827 - LTR7 LTR ERV1 0 450 1 3118 136 42 9 chr3 54302751 54303275 -173221303 - HERVH LTR ERV1 0 7713 7173 302 71 0 89 chr3 54303276 54303332 -173221246 - HERVH LTR ERV1 0 7713 7663 * 2596 168 9 7 chr3 54303326 54303785 -173220793 - HERVH LTR ERV1 -765 6948 6489 21400 146 41 38 chr3 54303785 54307994 -173216584 - HERVH LTR ERV1 -3184 4529 1 2081 157 52 30 chr3 54307994 54308434 -173216144 - LTR7 LTR ERV1 0 450 1 3913 99 32 0 chr3 54308446 54308983 -173215595 + HERVK3 LTR ERVK 354 907 -6336 2625 145 43 35 chr3 54308973 54309339 -173215239 + HERVK3 LTR ERVK 282 654 -6183 * 2170 109 0 23 chr3 54309339 54309642 -173214936 + AluY SINE Alu 1 296 -15 2625 145 43 35 chr3 54309642 54309736 -173214842 + HERVK3 LTR ERVK 654 746 -6091 1000 173 13 0 chr3 54310023 54310179 -173214399 + HERVK3 LTR ERVK 2332 2489 -4348 3392 139 8 6 chr3 54310256 54310766 -173213812 + MER9 LTR ERVK 1 511 0 551 138 0 0 chr3 54311112 54311192 -173213386 + HERVK3 LTR ERVK 3474 3553 -3284 * 1023 128 0 0 chr3 54311188 54311369 -173213209 + HERVK3 LTR ERVK 2027 3807 -3030 * 1391 105 5 14 chr3 54311365 54311574 -173213004 + HERVK3 LTR ERVK 2455 2661 -4582 252 242 47 70 chr3 54311605 54311733 -173212845 + MLT1J LTR MaLR 229 353 -158 3355 165 32 75 chr3 54311757 54312283 -173212295 + L1MB7 LINE L1 4537 4976 -1208 458 75 11 151 chr3 54312283 54312326 -173212252 + MADE1 DNA Mariner 1 26 -54 2142 119 37 0 chr3 54312326 54312621 -173211957 - AluY SINE Alu -5 306 1 458 75 11 151 chr3 54312621 54312670 -173211908 + MADE1 DNA Mariner 26 80 0 3355 165 32 75 chr3 54312670 54313268 -173211310 + L1MB7 LINE L1 4976 5598 -586 810 195 0 0 chr3 54313269 54313392 -173211186 + FLAM_C SINE Alu 3 125 -18 1252 184 94 0 chr3 54313394 54313649 -173210929 + L1MB7 LINE L1 5593 5871 -313 1167 158 131 14 chr3 54313654 54313993 -173210585 - MSTA LTR MaLR 0 375 1 9669 169 45 2 chr3 54313993 54315576 -173209002 - MSTA-int LTR MaLR 0 1651 1 2475 133 120 5 chr3 54315576 54315960 -173208618 - MSTA LTR MaLR 0 428 1 1287 156 4 62 chr3 54315960 54316235 -173208343 + L1MB7 LINE L1 5914 6172 -12 3208 89 11 11 chr3 54316243 54316314 -173208264 + L1PB1 LINE L1 5707 5777 -374 504 0 0 0 chr3 54316314 54316370 -173208208 + (TA)n Simple_repeat Simple_repeat 1 56 0 3208 89 11 11 chr3 54316370 54316736 -173207842 + L1PB1 LINE L1 5776 6144 -7 448 241 125 46 chr3 54316759 54316993 -173207585 + L1ME LINE L1 4878 5147 -999 1451 129 200 8 chr3 54316993 54317248 -173207330 + AluSg1 SINE Alu 1 304 -5 448 241 125 46 chr3 54317248 54317341 -173207237 + L1ME LINE L1 5147 5231 -915 2306 108 0 0 chr3 54317347 54317643 -173206935 - AluSg SINE Alu -14 296 1 816 254 101 42 chr3 54317701 54317898 -173206680 + L1ME LINE L1 5401 5585 -585 1438 211 125 3 chr3 54317898 54318249 -173206329 - MSTD LTR MaLR -2 394 1 816 254 101 42 chr3 54318249 54318436 -173206142 + L1ME LINE L1 5585 5808 -362 289 274 0 0 chr3 54318524 54318586 -173205992 + L1ME4a LINE L1 5592 5653 -2155 212 208 42 0 chr3 54318759 54318807 -173205771 + GA-rich Low_complexity Low_complexity 2 51 0 225 319 43 0 chr3 54318855 54318949 -173205629 + L1MC4 LINE L1 7926 8023 -19 321 284 179 5 chr3 54319053 54319243 -173205335 + MIR SINE MIR 13 235 -27 255 170 0 0 chr3 54319305 54319352 -173205226 + (CACCAT)n Simple_repeat Simple_repeat 4 50 0 2243 129 29 129 chr3 54319553 54320064 -173204514 - LTR46 LTR ERV1 0 460 1 2766 88 8 6 chr3 54320101 54320463 -173204115 - THE1B LTR MaLR -1 363 1 300 335 77 26 chr3 54320596 54320868 -173203710 + L1ME4a LINE L1 5806 6091 -30 8286 203 39 16 chr3 54320872 54322680 -173201898 - L1MB5 LINE L1 0 6174 4275 3846 90 6 4 chr3 54322680 54323190 -173201388 - MER9 LTR ERVK 0 511 1 8286 203 39 16 chr3 54323190 54324301 -173200277 - L1MB5 LINE L1 -1899 4275 3191 417 315 41 25 chr3 54326272 54326469 -173198109 + LTR33 LTR ERVL 41 240 -281 3353 118 34 44 chr3 54326552 54327120 -173197458 - MER34B LTR ERV1 -3 562 1 240 184 64 55 chr3 54327141 54327250 -173197328 + LTR33 LTR ERVL 394 503 -18 1636 186 61 0 chr3 54327721 54328001 -173196577 + AluJb SINE Alu 1 297 -15 258 32 0 0 chr3 54328012 54328043 -173196535 + (CAA)n Simple_repeat Simple_repeat 3 33 0 739 125 37 44 chr3 54328535 54328671 -173195907 + L1MA6 LINE L1 5811 5945 -355 940 203 0 0 chr3 54328672 54328829 -173195749 + AluSg/x SINE Alu 132 289 -16 1839 158 25 14 chr3 54328829 54329190 -173195388 + L1MA6 LINE L1 5936 6300 0 223 294 29 0 chr3 54330627 54330695 -173193883 - L2 LINE L2 0 3313 3244 314 265 254 11 chr3 54331321 54331502 -173193076 - MIR SINE MIR -20 242 18 217 328 0 0 chr3 54331646 54331713 -173192865 + L2 LINE L2 3247 3313 0 182 315 119 56 chr3 54331709 54332153 -173192425 - L2 LINE L2 -995 2319 1848 * 238 246 0 33 chr3 54332161 54332222 -173192356 - MLT1L LTR MaLR -4 611 553 2009 103 0 4 chr3 54332236 54332507 -173192071 + AluSc SINE Alu 29 298 -11 326 248 80 16 chr3 54332626 54332751 -173191827 - MLT1L LTR MaLR -283 332 200 22 35 0 0 chr3 54335626 54335655 -173188923 + AT_rich Low_complexity Low_complexity 1 29 0 285 208 14 49 chr3 54335989 54336106 -173188472 - L1MC4 LINE L1 -1000 7000 6859 455 206 285 33 chr3 54336654 54336868 -173187710 + MLT1I LTR MaLR 108 375 -34 1047 76 0 0 chr3 54337258 54337390 -173187188 + AluY SINE Alu 165 296 -15 477 0 0 0 chr3 54337912 54337965 -173186613 + (TG)n Simple_repeat Simple_repeat 2 54 0 14827 123 28 28 chr3 54338424 54338450 -173186128 + Tigger1 DNA MER2_type 24 49 -2369 201 39 0 0 chr3 54338450 54338476 -173186102 + (TTG)n Simple_repeat Simple_repeat 2 27 0 14827 123 28 28 chr3 54338476 54338825 -173185753 + Tigger1 DNA MER2_type 49 397 -2021 1815 166 10 23 chr3 54338825 54339127 -173185451 - AluSx SINE Alu -14 298 1 14827 123 28 28 chr3 54339127 54340212 -173184366 + Tigger1 DNA MER2_type 397 1486 -932 180 0 0 0 chr3 54340212 54340232 -173184346 + (TA)n Simple_repeat Simple_repeat 1 20 0 14827 123 28 28 chr3 54340232 54341165 -173183413 + Tigger1 DNA MER2_type 1486 2418 0 187 357 24 16 chr3 54341894 54342020 -173182558 - L3 LINE CR1 -481 1096 970 701 193 131 23 chr3 54342628 54342861 -173181717 + L1ME3 LINE L1 5866 6286 -48 280 127 63 0 chr3 54343084 54343147 -173181431 + L1ME4a LINE L1 6048 6114 -7 1964 152 10 3 chr3 54343149 54343452 -173181126 - AluSx SINE Alu -7 305 1 332 288 48 0 chr3 54343475 54343621 -173180957 - L3 LINE CR1 -592 985 833 345 281 94 0 chr3 54344213 54344341 -173180237 - MIR3 SINE MIR -4 204 65 25 0 0 0 chr3 54344604 54344629 -173179949 + AT_rich Low_complexity Low_complexity 1 25 0 299 273 149 0 chr3 54344781 54344902 -173179676 - MIR SINE MIR -115 147 9 295 295 108 0 chr3 54345250 54345379 -173179199 - MIR SINE MIR -14 248 106 241 346 44 0 chr3 54346124 54346260 -173178318 + MIR3 SINE MIR 60 201 -7 761 240 107 1 chr3 54347505 54347732 -173176846 + MIR SINE MIR 7 242 -20 1865 139 17 10 chr3 54347823 54348125 -173176453 + AluJo SINE Alu 1 304 -8 198 248 89 30 chr3 54350897 54350998 -173173580 + MIR SINE MIR 153 259 -3 22 56 0 0 chr3 54351918 54351954 -173172624 + AT_rich Low_complexity Low_complexity 1 36 0 2350 83 0 10 chr3 54353279 54353579 -173170999 - AluY SINE Alu -14 297 1 234 239 23 11 chr3 54353805 54353893 -173170685 + (TA)n Simple_repeat Simple_repeat 2 90 0 2946 18 0 0 chr3 54354592 54354922 -173169656 - L1PA2 LINE L1 0 6155 5826 728 34 0 0 chr3 54354922 54355001 -173169577 + L1PA2 LINE L1 5716 5797 -358 2226 147 77 132 chr3 54355046 54355185 -173169393 - LTR36 LTR ERV1 0 611 466 2182 99 0 7 chr3 54355185 54355502 -173169076 + AluSx SINE Alu 2 316 0 2226 147 77 132 chr3 54355502 54356007 -173168571 - LTR36 LTR ERV1 -145 466 1 188 286 0 0 chr3 54356114 54356170 -173168408 - MER5A DNA MER1_type -59 130 75 436 288 26 7 chr3 54356297 54356450 -173168128 - MER5B DNA MER1_type -22 156 1 268 202 147 37 chr3 54357344 54357453 -173167125 + MIR SINE MIR 4 124 -84 2591 177 40 65 chr3 54357491 54358119 -173166459 + LTR9 LTR ERV1 1 612 0 543 200 244 6 chr3 54358177 54358337 -173166241 + MER3 DNA MER1_type 9 206 -3 31 0 0 0 chr3 54358347 54358378 -173166200 + AT_rich Low_complexity Low_complexity 1 31 0 586 215 21 0 chr3 54358417 54358561 -173166017 + MIR SINE MIR 95 241 -21 239 152 0 0 chr3 54359378 54359424 -173165154 - L2 LINE L2 0 3272 3227 2645 186 8 64 chr3 54359520 54360112 -173164466 - LTR9 LTR ERV1 0 612 54 630 69 20 10 chr3 54360375 54360477 -173164101 + (TAGA)n Simple_repeat Simple_repeat 2 104 0 2289 127 8 11 chr3 54360916 54361270 -173163308 + MER41E LTR ERV1 1 353 -159 293 0 27 0 chr3 54361271 54361308 -173163270 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1424 103 0 0 chr3 54361311 54361495 -173163083 - AluY SINE Alu -31 280 97 1500 155 111 15 chr3 54361496 54361767 -173162811 - AluJb SINE Alu -15 297 1 1055 176 0 0 chr3 54361768 54361938 -173162640 + MER41E LTR ERV1 343 512 0 892 196 65 61 chr3 54362231 54362586 -173161992 + L1MC5 LINE L1 7598 7931 -30 200 143 24 0 chr3 54362598 54362640 -173161938 + GA-rich Low_complexity Low_complexity 4 46 0 1128 168 6 0 chr3 54363052 54363231 -173161347 + AluJb SINE Alu 35 214 -98 2374 154 30 9 chr3 54363236 54363677 -173160901 - LTR7 LTR ERV1 0 450 1 4010 91 5 14 chr3 54363677 54364239 -173160339 - HERVH LTR ERV1 0 7713 7157 * 5582 136 5 0 chr3 54364232 54365085 -173159493 - HERVH LTR ERV1 -1697 6016 5160 * 12658 150 23 29 chr3 54365084 54367709 -173156869 - HERVH LTR ERV1 -4164 3549 940 1103 111 0 0 chr3 54367737 54367890 -173156688 + HERVH LTR ERV1 2142 2294 -5419 604 175 36 22 chr3 54367891 54368028 -173156550 - HERVH LTR ERV1 -6774 939 801 1564 197 115 40 chr3 54368088 54368515 -173156063 - HERVH LTR ERV1 -7254 459 1 2302 148 39 14 chr3 54368515 54368954 -173155624 - LTR7 LTR ERV1 0 450 1 422 131 119 0 chr3 54368958 54369042 -173155536 + AluSg/x SINE Alu 216 309 0 372 322 129 35 chr3 54369139 54369394 -173155184 - L2 LINE L2 0 3272 2994 751 279 29 0 chr3 54369630 54369838 -173154740 + MER20 DNA MER1_type 6 219 0 245 289 46 35 chr3 54370744 54370917 -173153661 - L2 LINE L2 -926 2388 2214 318 314 72 48 chr3 54372039 54372448 -173152130 + LTR16A LTR ERVL 4 450 0 386 285 39 82 chr3 54372633 54372914 -173151664 + L2 LINE L2 2972 3240 -32 701 271 72 8 chr3 54372916 54373346 -173151232 - LTR33 LTR ERVL -1 520 11 355 354 105 43 chr3 54373596 54373969 -173150609 + L1MEd LINE L1 365 760 -5359 224 236 0 0 chr3 54374235 54374290 -173150288 + T-rich Low_complexity Low_complexity 1 55 0 282 352 177 35 chr3 54374858 54375534 -173149044 - L2 LINE L2 -1389 1925 1347 1653 153 10 20 chr3 54375534 54375828 -173148750 - AluJb SINE Alu -8 304 14 282 352 177 35 chr3 54375828 54376660 -173147918 - L2 LINE L2 -1967 1347 202 609 299 184 22 chr3 54376890 54377254 -173147324 - LTR16B LTR ERVL 0 464 42 247 123 14 27 chr3 54377292 54377365 -173147213 + (TTTA)n Simple_repeat Simple_repeat 3 74 0 704 201 13 7 chr3 54377470 54377619 -173146959 - MER103 DNA DNA -1 165 16 3929 89 35 2 chr3 54378287 54378838 -173145740 - L1PA14 LINE L1 -2 6159 5591 688 267 165 49 chr3 54378933 54379635 -173144943 - LTR41 LTR ERVL 0 795 5 321 26 0 0 chr3 54379845 54379883 -173144695 + (TC)n Simple_repeat Simple_repeat 2 39 0 2109 120 0 10 chr3 54379883 54380191 -173144387 - AluSx SINE Alu -7 305 1 618 260 178 25 chr3 54380191 54380433 -173144145 + L2 LINE L2 3035 3313 0 212 231 0 0 chr3 54381387 54381426 -173143152 + C-rich Low_complexity Low_complexity 2 40 0 1354 224 0 7 chr3 54381426 54381729 -173142849 - AluJo SINE Alu -11 301 1 533 358 63 5 chr3 54384787 54385008 -173139570 - MIR SINE MIR -6 256 23 816 204 50 6 chr3 54386333 54386514 -173138064 - MER5A DNA MER1_type 0 189 1 2389 209 66 52 chr3 54387017 54387387 -173137191 + L1ME1 LINE L1 5502 5886 -280 1812 151 3 0 chr3 54387387 54387704 -173136874 - AluSx SINE Alu 0 312 1 2389 209 66 52 chr3 54387704 54387983 -173136595 + L1ME1 LINE L1 5886 6160 -6 233 206 32 0 chr3 54388225 54388288 -173136290 + MER45 DNA AcHobo 1405 1469 -112 2160 98 0 32 chr3 54388971 54389287 -173135291 - AluSx SINE Alu -6 306 1 497 206 121 7 chr3 54389353 54389494 -173135084 + MER53 DNA DNA 18 174 -15 214 191 0 0 chr3 54389498 54389540 -173135038 + T-rich Low_complexity Low_complexity 1 42 0 3778 254 32 41 chr3 54389791 54390070 -173134508 + ERVL LTR ERVL 1135 1415 -4349 2372 34 61 0 chr3 54390070 54390366 -173134212 - L1PA4 LINE L1 0 6155 5842 3778 254 32 41 chr3 54390366 54391136 -173133442 + ERVL LTR ERVL 1415 2177 -3587 750 204 0 0 chr3 54391136 54391268 -173133310 + FLAM_C SINE Alu 2 133 0 315 272 19 10 chr3 54391275 54391378 -173133200 + L1M4 LINE L1 3426 3529 -2617 1927 224 107 5 chr3 54391421 54391868 -173132710 + ERVL LTR ERVL 2161 2653 -3111 2066 143 6 9 chr3 54391965 54392280 -173132298 - MER50 LTR ERV1 -23 711 398 1583 124 8 12 chr3 54392275 54392524 -173132054 - MER50 LTR ERV1 -486 248 1 * 445 176 0 0 chr3 54392828 54392896 -173131682 - HERVL18 LTR ERVL -530 5517 5450 382 217 36 0 chr3 54393025 54393108 -173131470 - Charlie1b DNA MER1_type 0 523 438 2216 150 50 0 chr3 54393108 54393448 -173131130 - LTR18A LTR ERVL 0 357 1 28080 129 11 1 chr3 54393449 54397339 -173127239 - HERVL18 LTR ERVL 0 6047 2121 11514 154 26 7 chr3 54397340 54399109 -173125469 - HERVL18 LTR ERVL -4237 1810 9 2299 118 76 0 chr3 54399123 54399453 -173125125 - LTR18A LTR ERVL 0 357 3 594 178 29 29 chr3 54399455 54399629 -173124949 - Charlie1b DNA MER1_type -81 442 269 1147 168 5 5 chr3 54399638 54399834 -173124744 - AluJo SINE Alu -116 196 1 578 203 108 7 chr3 54399837 54399985 -173124593 - Charlie1b DNA MER1_type -307 216 54 458 256 38 16 chr3 54400127 54400293 -173124285 - MIR3 SINE MIR -27 181 12 1978 141 0 3 chr3 54400394 54400707 -173123871 + AluSx SINE Alu 1 312 0 835 135 0 15 chr3 54400848 54400981 -173123597 - AluJb SINE Alu -173 139 9 870 168 7 0 chr3 54400982 54401131 -173123447 + AluJb SINE Alu 148 297 -15 286 278 40 32 chr3 54401357 54401484 -173123094 - L1MC/D LINE L1 -528 5593 5469 2204 168 37 20 chr3 54402097 54402502 -173122076 + LTR3 LTR ERVK 5 416 -16 15871 117 18 1 chr3 54402524 54404806 -173119772 + HERVK3 LTR ERVK 1 2321 -4922 881 130 0 3 chr3 54404806 54404946 -173119632 - LTR17 LTR ERV1 0 780 597 * 8190 126 33 3 chr3 54404944 54406192 -173118386 + HERVK3 LTR ERVK 4074 5358 -1885 396 141 0 0 chr3 54406187 54406251 -173118327 + HERVK3 LTR ERVK 6264 6327 -916 * 2836 60 6 0 chr3 54406319 54406670 -173117908 - L1PA6 LINE L1 -15 6139 5787 3358 96 0 0 chr3 54406670 54407106 -173117472 + HERVK3 LTR ERVK 6330 6765 -478 5098 94 48 35 chr3 54407106 54408257 -173116321 + MER11A LTR ERVK 1 1266 0 3803 79 2 0 chr3 54408257 54408740 -173115838 + HERVK3 LTR ERVK 6760 7243 0 2256 152 42 20 chr3 54408744 54409145 -173115433 + LTR3 LTR ERVK 5 414 -18 257 175 0 0 chr3 54409169 54409209 -173115369 + HERVK3 LTR ERVK 1 40 -7203 300 280 70 0 chr3 54409831 54409931 -173114647 + MLT1I LTR MaLR 96 202 -207 429 61 30 0 chr3 54409934 54410000 -173114578 - MER41B LTR ERV1 -86 549 482 606 265 36 41 chr3 54410017 54410213 -173114365 + MLT1I LTR MaLR 198 392 -17 3408 142 26 21 chr3 54410731 54411296 -173113282 + LTR36 LTR ERV1 44 611 0 417 259 89 0 chr3 54412168 54412280 -173112298 - L2 LINE L2 0 3272 3151 937 187 67 24 chr3 54412386 54412595 -173111983 - MER20 DNA MER1_type -1 218 1 1603 175 7 13 chr3 54412899 54413202 -173111376 - AluJo SINE Alu -11 301 1 24 0 0 0 chr3 54413310 54413334 -173111244 + AT_rich Low_complexity Low_complexity 1 24 0 2000 171 19 48 chr3 54415229 54415374 -173109204 + L1MB7 LINE L1 5767 5915 -269 847 143 8 0 chr3 54415374 54415500 -173109078 + FLAM_C SINE Alu 1 127 -6 2000 171 19 48 chr3 54415500 54415774 -173108804 + L1MB7 LINE L1 5915 6174 -10 225 83 0 0 chr3 54416739 54416775 -173107803 + (TG)n Simple_repeat Simple_repeat 1 36 0 1093 224 130 36 chr3 54417271 54417481 -173107097 + HAL1 LINE L1 1729 1918 -589 288 0 0 0 chr3 54417481 54417513 -173107065 + (GA)n Simple_repeat Simple_repeat 2 33 0 * 459 52 0 0 chr3 54417512 54417570 -173107008 + (TG)n Simple_repeat Simple_repeat 2 59 0 1093 224 130 36 chr3 54417513 54417752 -173106826 + HAL1 LINE L1 1918 2158 -349 180 327 111 25 chr3 54418680 54418842 -173105736 - MIR3 SINE MIR -12 196 21 1136 278 37 62 chr3 54419463 54419981 -173104597 + MLT1J LTR MaLR 1 505 -6 205 200 88 120 chr3 54421648 54421773 -173102805 + MIR SINE MIR 47 167 -95 1357 224 108 19 chr3 54422186 54422650 -173101928 + L1ME3A LINE L1 5651 6155 -15 542 272 106 66 chr3 54423465 54423657 -173100921 + L1ME4a LINE L1 5614 5797 -324 1962 144 0 10 chr3 54423657 54423955 -173100623 + AluJo SINE Alu 3 297 -15 542 272 106 66 chr3 54423955 54424244 -173100334 + L1ME4a LINE L1 5797 6114 -7 187 324 28 0 chr3 54426349 54426420 -173098158 - MIR SINE MIR -71 137 65 429 336 72 42 chr3 54426785 54427170 -173097408 + L1ME2 LINE L1 3608 3980 -2166 2285 111 0 0 chr3 54427170 54427468 -173097110 - AluSx SINE Alu -14 298 1 429 336 72 42 chr3 54427468 54428094 -173096484 + L1ME2 LINE L1 3980 4650 -1496 243 157 0 0 chr3 54428143 54428194 -173096384 + CT-rich Low_complexity Low_complexity 1 51 0 349 303 63 78 chr3 54428659 54428930 -173095648 + L1ME2 LINE L1 5259 5528 -714 316 329 56 21 chr3 54429381 54429524 -173095054 + L1ME2 LINE L1 5736 5883 -281 1517 177 27 13 chr3 54480060 54480360 -173044218 + L1MD3 LINE L1 7692 7995 0 251 260 0 0 chr3 54480370 54480433 -173044145 + MIR SINE MIR 91 146 -62 186 43 0 0 chr3 54481014 54481037 -173043541 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr3 54482456 54482477 -173042101 + AT_rich Low_complexity Low_complexity 1 21 0 531 0 0 0 chr3 54482699 54482758 -173041820 + (TG)n Simple_repeat Simple_repeat 2 60 0 1535 184 0 20 chr3 54482773 54483077 -173041501 - AluJo SINE Alu -1 311 14 405 0 0 0 chr3 54483099 54483144 -173041434 + (TA)n Simple_repeat Simple_repeat 2 46 0 1229 120 6 0 chr3 54483148 54483323 -173041255 - AluSg/x SINE Alu -30 282 107 304 259 130 31 chr3 54483532 54483665 -173040913 + MIR SINE MIR 105 252 -10 617 195 0 9 chr3 54484046 54484159 -173040419 + FLAM_C SINE Alu 5 116 -27 22 35 0 0 chr3 54484161 54484190 -173040388 + AT_rich Low_complexity Low_complexity 1 29 0 1636 254 75 21 chr3 54484190 54484713 -173039865 - L1ME3A LINE L1 -5 6165 5615 326 197 0 15 chr3 54484713 54484779 -173039799 - MER63 DNA MER1_type 0 1061 997 1275 164 0 62 chr3 54484826 54485070 -173039508 - MER63 DNA MER1_type -209 851 623 252 212 50 0 chr3 54485070 54485169 -173039409 + CT-rich Low_complexity Low_complexity 1 104 0 874 105 0 58 chr3 54485169 54485360 -173039218 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 240 35 0 0 chr3 54485389 54485418 -173039160 + (TTCCC)n Simple_repeat Simple_repeat 1 29 0 2622 137 20 49 chr3 54485893 54486340 -173038238 - Tigger2a DNA MER2_type 0 434 1 639 253 6 0 chr3 54487398 54487564 -173037014 + L1M1 LINE L1 31 197 -6666 * 3975 147 27 3 chr3 54487561 54488256 -173036322 + L1M1 LINE L1 1392 2103 -4760 460 226 40 8 chr3 54488369 54488493 -173036085 - FLAM_C SINE Alu -12 131 4 1869 190 26 50 chr3 54488505 54488671 -173035907 - L1MC4 LINE L1 -878 7164 6996 1822 156 3 0 chr3 54488671 54488966 -173035612 - AluJb SINE Alu -16 296 1 1869 190 26 50 chr3 54488966 54489256 -173035322 - L1MC4 LINE L1 -1046 6996 6719 2266 99 3 0 chr3 54490765 54491069 -173033509 - AluSg1 SINE Alu -4 305 1 234 221 91 78 chr3 54491164 54491241 -173033337 - MIR SINE MIR -177 85 8 1189 136 16 0 chr3 54491904 54492088 -173032490 + AluSx SINE Alu 1 187 -125 346 301 21 14 chr3 54492265 54492408 -173032170 + (CCCTAA)n Simple_repeat Simple_repeat 5 148 0 1462 179 61 14 chr3 54494483 54494779 -173029799 - AluJb SINE Alu -2 310 1 225 103 0 0 chr3 54496152 54496181 -173028397 - Alu SINE Alu -271 29 1 2259 69 3 0 chr3 54496205 54496493 -173028085 + AluSp SINE Alu 5 293 -20 1907 138 18 21 chr3 54496493 54496826 -173027752 + LTR56 LTR ERV1 16 347 -98 11263 130 10 19 chr3 54496826 54497794 -173026784 + L1M1 LINE L1 4089 5065 -1953 1816 154 13 26 chr3 54497794 54498106 -173026472 + AluJo SINE Alu 1 308 -4 11263 130 10 19 chr3 54498106 54499544 -173025034 + L1M1 LINE L1 5065 6467 -551 2348 84 0 0 chr3 54500270 54500569 -173024009 + AluSx SINE Alu 1 299 -13 616 183 43 0 chr3 54500644 54500759 -173023819 - MER45A DNA AcHobo -1 177 58 2475 61 0 0 chr3 54501079 54501390 -173023188 + AluY SINE Alu 1 311 0 895 286 86 26 chr3 54501428 54501847 -173022731 + HAL1 LINE L1 7 450 -2057 1306 204 14 11 chr3 54502273 54502552 -173022026 + AluJo SINE Alu 31 310 -2 355 194 19 58 chr3 54502696 54502799 -173021779 + HAL1 LINE L1 1041 1139 -1368 2286 64 0 0 chr3 54503363 54503687 -173020891 + AluY SINE Alu 1 324 0 207 302 0 47 chr3 54503960 54504046 -173020532 - MIR SINE MIR -55 207 126 404 129 0 29 chr3 54504195 54504265 -173020313 + AluJb SINE Alu 64 131 -181 1424 87 0 0 chr3 54504267 54504451 -173020127 + AluSx SINE Alu 3 186 -126 344 71 0 0 chr3 54504451 54504493 -173020085 + Alu SINE Alu 233 274 -26 198 0 0 0 chr3 54504496 54504518 -173020060 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 5298 84 34 71 chr3 54505798 54507148 -173017430 - SVA Other Other -518 868 14 455 0 0 18 chr3 54507153 54507209 -173017369 + (GGGAGA)n Simple_repeat Simple_repeat 1 55 0 185 310 62 0 chr3 54507296 54507409 -173017169 + L2 LINE L2 3150 3269 -3 810 41 10 0 chr3 54507419 54507517 -173017061 - AluY SINE Alu -177 134 36 264 53 0 0 chr3 54507528 54507566 -173017012 - AluSg/x SINE Alu -169 131 94 470 263 18 22 chr3 54507603 54507846 -173016732 - MER41B LTR ERV1 -205 430 55 439 176 250 0 chr3 54507954 54508062 -173016516 - MER74C LTR ERVL -296 164 30 806 212 130 48 chr3 54508103 54508419 -173016159 + MLT1C LTR MaLR 126 467 0 240 254 51 112 chr3 54508706 54508903 -173015675 + L2 LINE L2 2966 3150 -163 637 273 96 47 chr3 54510151 54510475 -173014103 + L1ME3A LINE L1 5481 5828 -342 1277 187 114 45 chr3 54510475 54510834 -173013744 + MER58D DNA MER1_type 2 385 -1 637 273 96 47 chr3 54510834 54510894 -173013684 + L1ME3A LINE L1 5828 5884 -286 269 221 114 70 chr3 54512140 54512298 -173012280 - LTR41 LTR ERVL -590 183 19 4005 207 94 38 chr3 54512303 54512460 -173012118 + L1MC3 LINE L1 6203 6350 -1435 210 105 0 0 chr3 54512460 54512498 -173012080 + (TA)n Simple_repeat Simple_repeat 2 39 0 1963 113 3 0 chr3 54512498 54512781 -173011797 - AluSg SINE Alu -26 284 1 4005 207 94 38 chr3 54512781 54513793 -173010785 + L1MC3 LINE L1 6349 7438 -347 2313 87 6 0 chr3 54513895 54514206 -173010372 - AluSp SINE Alu 0 313 1 2220 167 57 21 chr3 54514213 54514615 -173009963 + L1MEc LINE L1 2042 2290 -4136 1569 186 3 17 chr3 54514615 54514910 -173009668 - AluJb SINE Alu -21 291 1 2220 167 57 21 chr3 54514910 54515107 -173009471 + L1MEc LINE L1 2290 2479 -3947 676 207 0 0 chr3 54515110 54515250 -173009328 - L1M4 LINE L1 -1266 4880 4741 771 148 0 0 chr3 54515252 54515367 -173009211 - AluSg/x SINE Alu -13 297 183 9919 203 45 79 chr3 54515382 54517345 -173007233 + L1MEc LINE L1 2621 4649 -1777 250 191 0 0 chr3 54517345 54517387 -173007191 + 5S rRNA rRNA 1 42 -79 261 57 0 0 chr3 54517394 54517429 -173007149 + (CA)n Simple_repeat Simple_repeat 1 35 0 9919 203 45 79 chr3 54517429 54517917 -173006661 + L1MEc LINE L1 4655 5158 -1268 1937 133 7 17 chr3 54517917 54518217 -173006361 + AluSx SINE Alu 6 302 -10 9919 203 45 79 chr3 54518217 54518626 -173005952 + L1MEc LINE L1 5158 5579 -847 1763 148 57 0 chr3 54518626 54518909 -173005669 + AluJb SINE Alu 1 299 -13 9919 203 45 79 chr3 54518909 54518924 -173005654 + L1MEc LINE L1 5579 5593 -833 2083 100 0 18 chr3 54518924 54519211 -173005367 + AluSg SINE Alu 1 280 -30 370 0 0 0 chr3 54519211 54519252 -173005326 + (CAA)n Simple_repeat Simple_repeat 2 180 0 9919 203 45 79 chr3 54519252 54519460 -173005118 + L1MEc LINE L1 5593 5652 -774 337 200 0 0 chr3 54519463 54519528 -173005050 - L1 LINE L1 -1311 4835 4771 1555 167 59 3 chr3 54519528 54519815 -173004763 + L1MC1 LINE L1 6016 6318 -15 225 0 0 0 chr3 54519815 54519840 -173004738 + (TG)n Simple_repeat Simple_repeat 2 26 0 2152 107 3 10 chr3 54519841 54520130 -173004448 - AluSq SINE Alu -26 287 1 5899 100 13 25 chr3 54520566 54520652 -173003926 + L1PB2 LINE L1 5264 5349 -802 2442 67 3 3 chr3 54520652 54520951 -173003627 + AluY SINE Alu 1 299 -12 5899 100 13 25 chr3 54520951 54521758 -173002820 + L1PB2 LINE L1 5349 6147 -4 489 261 106 28 chr3 54521998 54522178 -173002400 + LTR33 LTR ERVL 328 521 0 3489 126 19 15 chr3 54522266 54522791 -173001787 + MER1A DNA MER1_type 1 527 0 1788 169 41 0 chr3 54523112 54523402 -173001176 - AluJb SINE Alu -10 302 1 2277 100 14 0 chr3 54523566 54523855 -173000723 + AluSx SINE Alu 3 295 -17 284 302 39 16 chr3 54524154 54524283 -173000295 - MER113 DNA MER1_type? -257 264 133 607 288 188 10 chr3 54524357 54524857 -172999721 - MLT1G LTR MaLR 0 590 2 5134 27 2 2 chr3 54525364 54525925 -172998653 + SVA Other Other 824 1384 -2 22 0 0 0 chr3 54525925 54525947 -172998631 + AT_rich Low_complexity Low_complexity 1 22 0 1693 157 17 27 chr3 54526133 54526432 -172998146 + MER74C LTR ERVL 164 459 -1 320 208 28 0 chr3 54526435 54526507 -172998071 - MLT1D LTR MaLR -378 127 54 536 148 11 6 chr3 54526586 54526700 -172997878 - MER4E LTR ERV1 -588 284 62 * 1440 185 19 7 chr3 54526695 54526965 -172997613 - MER49 LTR ERV1 -646 277 5 1392 126 10 0 chr3 54526975 54527182 -172997396 - MER2 DNA MER2_type -135 210 2 234 289 8 8 chr3 54527328 54527406 -172997172 + CT-rich Low_complexity Low_complexity 4 128 0 352 218 127 25 chr3 54529507 54529670 -172994908 - MLT1J2 LTR MaLR -183 263 69 286 243 0 14 chr3 54530288 54530362 -172994216 + MIR3 SINE MIR 128 200 -8 1215 215 49 52 chr3 54531110 54531435 -172993143 + L1MB5 LINE L1 5851 6174 0 2075 208 27 33 chr3 54531673 54532154 -172992424 + MER82 DNA MER2_type 168 645 -8 2061 108 36 0 chr3 54532558 54532836 -172991742 + AluSx SINE Alu 11 298 -14 2223 185 39 0 chr3 54533467 54533883 -172990695 - MSTB1 LTR MaLR 0 432 1 277 166 38 121 chr3 54534334 54534491 -172990087 + Charlie7 DNA MER1_type 2453 2596 -16 2355 81 0 19 chr3 54534503 54534811 -172989767 + AluY SINE Alu 1 302 -9 252 59 0 0 chr3 54534815 54534849 -172989729 + (CAA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr3 54534880 54534904 -172989674 + AT_rich Low_complexity Low_complexity 1 24 0 2409 108 47 8 chr3 54534969 54535330 -172989248 - THE1C LTR MaLR 0 375 1 274 390 39 0 chr3 54536784 54536989 -172987589 - L1MEc LINE L1 -6017 379 167 255 197 15 45 chr3 54537287 54537353 -172987225 - Charlie5 DNA MER1_type -27 2585 2522 351 0 0 0 chr3 54537353 54537392 -172987186 + (TTA)n Simple_repeat Simple_repeat 2 40 0 311 192 0 0 chr3 54537392 54537444 -172987134 - AluJb SINE Alu -180 122 71 1283 202 24 8 chr3 54537502 54537754 -172986824 + LTR47B LTR ERVL 188 443 0 3016 6 0 0 chr3 54538529 54538847 -172985731 - AluYb8 SINE Alu 0 318 1 272 159 0 0 chr3 54539041 54539081 -172985497 - MLT2B2 LTR ERVL -5 510 471 868 138 7 59 chr3 54539081 54539233 -172985345 - Tigger5 DNA MER2_type 0 2323 2180 672 240 7 14 chr3 54539243 54539389 -172985189 - Tigger5 DNA MER2_type -2178 145 1 834 115 0 0 chr3 54539410 54539523 -172985055 + MER83 LTR ERV1 1 113 -335 1629 125 87 67 chr3 54539596 54539941 -172984637 + MER83 LTR ERV1 97 448 0 2105 170 86 28 chr3 54539941 54540370 -172984208 - MLT2B2 LTR ERVL -61 454 1 436 324 84 42 chr3 54540472 54541019 -172983559 - L1M4 LINE L1 -1435 4711 4142 258 345 0 0 chr3 54541254 54541367 -172983211 + L1P LINE L1 4900 5012 -1134 2230 178 47 30 chr3 54541429 54541900 -172982678 + MLT1D LTR MaLR 26 504 -1 2493 150 54 18 chr3 54542563 54543063 -172981515 - L1MB2 LINE L1 -2 6169 5652 207 69 0 0 chr3 54543089 54543118 -172981460 + (T)n Simple_repeat Simple_repeat 1 29 0 1461 150 11 34 chr3 54543127 54543393 -172981185 - L1MB2 LINE L1 -497 5674 5415 1281 218 46 89 chr3 54544707 54545079 -172979499 + MER39 LTR ERV1 1 529 -178 2260 119 0 0 chr3 54545079 54545373 -172979205 + AluSx SINE Alu 3 296 -16 1281 218 46 89 chr3 54545373 54545545 -172979033 + MER39 LTR ERV1 529 707 0 24 32 0 0 chr3 54545918 54545949 -172978629 + AT_rich Low_complexity Low_complexity 1 31 0 2357 95 10 3 chr3 54546164 54546468 -172978110 - AluSg SINE Alu -4 306 1 2206 166 35 53 chr3 54546770 54547223 -172977355 + LTR42 LTR ERVL 1 445 -50 700 242 109 0 chr3 54547245 54547410 -172977168 - MER3 DNA MER1_type -26 183 1 1790 157 0 51 chr3 54547541 54547853 -172976725 - AluJb SINE Alu -16 296 1 2308 107 3 3 chr3 54548566 54548874 -172975704 - AluSx SINE Alu -4 308 1 202 264 57 28 chr3 54549690 54549796 -172974782 + L2 LINE L2 1690 1798 -1516 429 246 18 9 chr3 54549796 54549906 -172974672 + MER5A DNA MER1_type 1 111 -78 335 218 13 0 chr3 54550127 54550205 -172974373 - MER116 DNA Mariner -1 79 1 96 81 0 0 chr3 54550224 54550446 -172974132 + AT_rich Low_complexity Low_complexity 1 222 0 23 0 0 0 chr3 54551700 54551723 -172972855 + AT_rich Low_complexity Low_complexity 1 23 0 2239 106 0 0 chr3 54552305 54552640 -172971938 + AluSx SINE Alu 1 335 0 1637 172 0 8 chr3 54552658 54552920 -172971658 + AluJo SINE Alu 14 273 -39 522 0 0 0 chr3 54552976 54553034 -172971544 + (CA)n Simple_repeat Simple_repeat 2 59 0 786 193 0 0 chr3 54553466 54553632 -172970946 + (TCCA)n Simple_repeat Simple_repeat 3 168 0 1135 153 0 11 chr3 54554845 54555021 -172969557 - AluJb SINE Alu -2 310 137 1818 182 3 0 chr3 54555022 54555318 -172969260 - AluJo SINE Alu -15 297 1 230 335 52 34 chr3 54555332 54555681 -172968897 - L1M4 LINE L1 -1419 4727 4373 1578 121 4 4 chr3 54555710 54555950 -172968628 - AluSg/x SINE Alu 0 312 73 1798 176 16 20 chr3 54557491 54557797 -172966781 - AluJb SINE Alu -7 305 1 754 162 0 44 chr3 54558062 54558198 -172966380 - FLAM_C SINE Alu -3 130 1 1821 173 3 17 chr3 54558597 54558898 -172965680 + AluJo SINE Alu 1 297 -15 890 135 15 0 chr3 54559062 54559195 -172965383 + AluJo SINE Alu 1 135 -177 1725 161 0 0 chr3 54560065 54560314 -172964264 + AluSx SINE Alu 1 249 -63 2469 101 12 9 chr3 54560318 54560656 -172963922 - THE1B LTR MaLR -25 339 1 882 165 38 84 chr3 54560658 54560919 -172963659 + L1M4 LINE L1 2293 2541 -3605 501 138 115 0 chr3 54560919 54561006 -172963572 - Alu SINE Alu -13 297 201 295 183 0 17 chr3 54561102 54561162 -172963416 + L1MB8 LINE L1 6109 6167 -11 604 247 73 52 chr3 54561162 54561449 -172963129 - L2 LINE L2 -655 2659 2367 2078 136 0 0 chr3 54562090 54562384 -172962194 + AluSx SINE Alu 1 294 -18 1894 136 0 0 chr3 54563191 54563470 -172961108 - Tigger5 DNA MER2_type 0 2323 2045 180 0 0 0 chr3 54563470 54563490 -172961088 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 450 157 19 19 chr3 54563490 54563598 -172960980 + CT-rich Low_complexity Low_complexity 4 111 0 945 133 6 11 chr3 54563607 54563676 -172960902 + (TTTC)n Simple_repeat Simple_repeat 1 69 -111 3594 53 8 8 chr3 54563676 54564145 -172960433 - L1PA8 LINE L1 0 6172 5704 945 133 6 11 chr3 54564145 54564256 -172960322 + (TTTC)n Simple_repeat Simple_repeat 69 180 0 467 247 0 0 chr3 54564279 54564372 -172960206 - Tigger5 DNA MER2_type -2230 93 1 292 308 77 0 chr3 54565280 54565397 -172959181 - MIR3 SINE MIR -9 199 74 183 80 0 0 chr3 54565573 54565598 -172958980 + (TAA)n Simple_repeat Simple_repeat 1 25 0 777 157 113 27 chr3 54565608 54565793 -172958785 - MIR SINE MIR -34 228 28 417 208 21 0 chr3 54566158 54566254 -172958324 - MIR SINE MIR -64 198 101 688 231 29 0 chr3 54566353 54566526 -172958052 - MER5B DNA MER1_type 0 178 1 1644 132 103 7 chr3 54566895 54567167 -172957411 - AluJb SINE Alu -14 298 1 455 174 0 65 chr3 54567495 54567587 -172956991 - LTR40a LTR ERVL -16 503 418 822 290 44 4 chr3 54567633 54567885 -172956693 - LTR40c LTR ERVL -182 283 22 261 182 0 0 chr3 54567898 54567942 -172956636 - HERVL40 LTR ERVL -15 5515 5472 2085 107 23 20 chr3 54568120 54568420 -172956158 + AluSq SINE Alu 1 301 -12 436 205 58 111 chr3 54570611 54570801 -172953777 + LTR37A LTR ERV1 59 238 -188 * 1211 108 0 0 chr3 54570796 54570953 -172953625 - AluSg/x SINE Alu -9 301 145 335 287 21 0 chr3 54570956 54571050 -172953528 + L2 LINE L2 1125 1220 -2094 270 177 32 16 chr3 54571061 54571123 -172953455 + L2 LINE L2 1026 1088 -2226 * 320 278 87 32 chr3 54571117 54571243 -172953335 + L2 LINE L2 2920 3052 -261 1456 158 4 34 chr3 54571494 54571760 -172952818 + AluJo SINE Alu 50 307 -5 330 26 0 0 chr3 54571775 54571814 -172952764 + (TG)n Simple_repeat Simple_repeat 2 40 0 2213 116 63 6 chr3 54572800 54573119 -172951459 - MER1B DNA MER1_type 0 337 1 468 141 64 0 chr3 54574069 54574147 -172950431 - FLAM_C SINE Alu -4 139 57 352 207 138 0 chr3 54574244 54574331 -172950247 + MIR SINE MIR 66 164 -98 2612 48 0 26 chr3 54574458 54574771 -172949807 - AluY SINE Alu -6 305 1 207 0 0 0 chr3 54575832 54575855 -172948723 + (T)n Simple_repeat Simple_repeat 1 23 0 1449 153 0 9 chr3 54575875 54576097 -172948481 - AluJo SINE Alu -8 304 85 205 250 0 0 chr3 54576361 54576405 -172948173 + (CACG)n Simple_repeat Simple_repeat 4 47 0 442 178 0 0 chr3 54577064 54577137 -172947441 + L2 LINE L2 3241 3313 0 346 188 21 62 chr3 54577527 54577623 -172946955 - AluJ SINE Alu 0 302 211 1336 185 0 9 chr3 54577641 54577868 -172946710 - AluJo SINE Alu -87 225 1 1871 168 0 3 chr3 54578056 54578400 -172946178 - AluJb SINE Alu 0 343 1 2281 111 10 3 chr3 54578443 54578749 -172945829 + AluSg SINE Alu 1 308 -2 2275 157 17 13 chr3 54578790 54579293 -172945285 - L1M4 LINE L1 -493 5691 5185 * 3010 222 83 49 chr3 54579292 54580188 -172944390 - L1MDa LINE L1 -3858 2682 1817 1839 192 0 22 chr3 54580188 54580505 -172944073 - AluJb SINE Alu 0 312 3 3010 222 83 49 chr3 54580505 54580650 -172943928 - L1MDa LINE L1 -4723 1817 1678 2506 91 0 0 chr3 54580650 54580957 -172943621 - AluSg SINE Alu -3 307 1 3010 222 83 49 chr3 54580957 54581130 -172943448 - L1MDa LINE L1 -4862 1678 1512 3603 54 7 5 chr3 54581130 54581577 -172943001 + LTR7 LTR ERV1 1 448 -2 3010 222 83 49 chr3 54581577 54581739 -172942839 - L1MDa LINE L1 -5028 1512 1260 464 253 36 48 chr3 54582268 54582434 -172942144 - LTR41 LTR ERVL -608 165 2 1167 171 58 0 chr3 54582929 54583187 -172941391 + L1MA7 LINE L1 5907 6179 -112 316 231 13 0 chr3 54585102 54585180 -172939398 - MER58 DNA MER1_type -33 2387 2309 1458 161 72 58 chr3 54585337 54585628 -172938950 + AluJb SINE Alu 1 295 -17 829 187 44 11 chr3 54586408 54586590 -172937988 + MLT1F1 LTR MaLR 380 567 0 398 299 132 51 chr3 54586649 54586815 -172937763 + L2 LINE L2 2281 2432 -881 2260 125 10 0 chr3 54586815 54587112 -172937466 - AluSx SINE Alu -12 300 1 398 299 132 51 chr3 54587112 54587781 -172936797 + L2 LINE L2 2432 3179 -134 464 339 49 9 chr3 54589282 54589506 -172935072 + MIR SINE MIR 16 248 -14 1733 59 18 0 chr3 54591060 54591281 -172933297 - AluSg/x SINE Alu -1 309 85 2107 134 17 0 chr3 54592662 54592953 -172931625 + AluSx SINE Alu 1 296 -16 385 280 95 61 chr3 54593143 54593902 -172930676 - L2 LINE L2 -18 3254 2460 377 302 38 13 chr3 54594027 54594186 -172930392 + REP3 LTR ERV 12 174 -388 * 429 338 78 0 chr3 54594185 54594404 -172930174 + REP3 LTR ERV 279 514 -48 1758 162 36 0 chr3 54597713 54597868 -172926710 - AluJb SINE Alu -24 288 117 186 43 0 0 chr3 54597868 54597891 -172926687 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1758 162 36 0 chr3 54597891 54598013 -172926565 - AluJb SINE Alu -195 117 1 884 231 9 5 chr3 54598014 54598226 -172926352 - MER63 DNA MER1_type -427 633 421 287 224 30 30 chr3 54598334 54598401 -172926177 - L1ME LINE L1 -549 5613 5547 1497 129 9 0 chr3 54598411 54598628 -172925950 - AluSg/x SINE Alu -3 307 89 282 163 0 0 chr3 54598770 54598813 -172925765 - Alu SINE Alu -257 43 1 1118 240 84 56 chr3 54600070 54600359 -172924219 + L2 LINE L2 2307 2587 -727 2159 95 0 14 chr3 54600359 54600643 -172923935 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr3 54600643 54600670 -172923908 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 1118 240 84 56 chr3 54600670 54600914 -172923664 + L2 LINE L2 2586 2916 -398 259 247 136 11 chr3 54601236 54601348 -172923230 + MIR SINE MIR 36 160 -65 190 356 11 11 chr3 54602384 54602471 -172922107 - MIR SINE MIR 0 262 176 610 310 35 5 chr3 54602490 54602687 -172921891 - MIR SINE MIR -10 252 50 1750 259 89 21 chr3 54602982 54603641 -172920937 + L1ME3A LINE L1 5461 6164 -6 701 221 127 67 chr3 54603682 54604012 -172920566 + L1ME3A LINE L1 3813 4162 -1984 428 291 17 17 chr3 54604049 54604166 -172920412 + L1ME3A LINE L1 4258 4374 -1772 789 261 60 28 chr3 54604175 54604459 -172920119 + L1ME3A LINE L1 5849 6141 -29 414 0 0 0 chr3 54604610 54604656 -172919922 + (TG)n Simple_repeat Simple_repeat 2 47 0 1526 224 35 7 chr3 54604755 54606280 -172918298 - L1MDa LINE L1 -2501 4039 2303 1649 192 138 2 chr3 54606281 54606687 -172917891 + MLT1D LTR MaLR 2 462 -43 375 230 0 23 chr3 54606688 54606775 -172917803 - L1MDa LINE L1 -6437 103 19 602 126 11 21 chr3 54607518 54607613 -172916965 + FRAM SINE Alu 44 137 -39 234 0 0 0 chr3 54607616 54607642 -172916936 + (TC)n Simple_repeat Simple_repeat 1 26 0 * 396 0 0 0 chr3 54607641 54607685 -172916893 + (CA)n Simple_repeat Simple_repeat 1 44 0 211 303 66 0 chr3 54608627 54608703 -172915875 - L2 LINE L2 -38 3234 3154 249 226 0 0 chr3 54608824 54608908 -172915670 + GA-rich Low_complexity Low_complexity 2 85 0 187 358 73 7 chr3 54609107 54609244 -172915334 + L2 LINE L2 3125 3270 -2 500 314 39 29 chr3 54609252 54609456 -172915122 - MIR SINE MIR -43 219 14 191 256 0 0 chr3 54609548 54609591 -172914987 + L3 LINE CR1 1178 1220 -357 204 228 16 24 chr3 54610156 54610234 -172914344 + GA-rich Low_complexity Low_complexity 1 77 0 205 330 140 0 chr3 54610642 54610742 -172913836 + MIR SINE MIR 47 160 -102 201 287 218 0 chr3 54610956 54611043 -172913535 + MIR SINE MIR 73 178 -84 460 198 95 35 chr3 54611210 54611326 -172913252 + MER63 DNA MER1_type 1 749 -313 230 301 70 35 chr3 54612170 54612313 -172912265 - L2 LINE L2 -909 2405 2258 954 188 0 24 chr3 54612359 54612552 -172912026 + FRAM SINE Alu 1 53 0 14998 192 13 11 chr3 54612666 54614049 -172910529 + L1PB1 LINE L1 1570 2948 -3203 2149 85 27 20 chr3 54614049 54614344 -172910234 + AluY SINE Alu 1 297 -14 14998 192 13 11 chr3 54614344 54615378 -172909200 + L1PB1 LINE L1 2948 3978 -2173 2438 80 13 0 chr3 54615378 54615677 -172908901 + AluSp SINE Alu 1 303 -10 14998 192 13 11 chr3 54615677 54617203 -172907375 + L1PB1 LINE L1 3978 5498 -653 2268 133 17 0 chr3 54617203 54617545 -172907033 + L1PB1 LINE L1 5794 6144 -7 209 338 14 0 chr3 54617868 54617939 -172906639 + GA-rich Low_complexity Low_complexity 2 73 0 878 145 0 26 chr3 54618522 54618674 -172905904 + L1 LINE L1 4052 4199 -1947 253 167 0 0 chr3 54619396 54619438 -172905140 + MIR SINE MIR 80 121 -141 894 183 7 0 chr3 54621351 54621504 -172903074 - FRAM SINE Alu -9 157 4 1908 124 10 3 chr3 54621512 54621810 -172902768 - AluSx SINE Alu -12 300 1 203 229 205 36 chr3 54621882 54621965 -172902613 - L2 LINE L2 -8 3264 3168 1948 108 7 0 chr3 54622214 54622524 -172902054 + AluSp SINE Alu 6 317 0 414 226 28 0 chr3 54622524 54622630 -172901948 - L1ME1 LINE L1 -104 6062 5954 1772 136 3 21 chr3 54622906 54623220 -172901358 - AluJo SINE Alu 0 309 1 203 366 52 8 chr3 54624042 54624176 -172900402 - MIR3 SINE MIR -66 142 3 186 43 0 0 chr3 54624843 54624866 -172899712 + (CA)n Simple_repeat Simple_repeat 1 23 0 183 343 43 0 chr3 54624970 54625040 -172899538 + MIR SINE MIR 118 190 -72 4862 119 31 25 chr3 54625339 54625687 -172898891 - L1PB3 LINE L1 0 6154 5810 351 0 0 0 chr3 54625687 54625726 -172898852 + (CA)n Simple_repeat Simple_repeat 2 40 0 4862 119 31 25 chr3 54625726 54626175 -172898403 - L1PB3 LINE L1 -344 5810 5352 649 189 118 0 chr3 54626364 54626517 -172898061 - L1MC1 LINE L1 0 6333 6163 2295 81 3 0 chr3 54627555 54627850 -172896728 + AluSp SINE Alu 1 296 -17 240 35 0 0 chr3 54627851 54627880 -172896698 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 333 0 0 0 chr3 54627879 54627916 -172896662 + (CA)n Simple_repeat Simple_repeat 2 38 0 197 322 17 0 chr3 54628023 54628082 -172896496 - MIR SINE MIR -202 60 1 257 267 200 0 chr3 54628247 54628352 -172896226 + MIR SINE MIR 8 133 -129 353 278 48 24 chr3 54628757 54628883 -172895695 - L2 LINE L2 -261 3011 2883 338 286 131 29 chr3 54629151 54629326 -172895252 + LTR33A LTR ERVL 110 302 -219 1327 244 101 51 chr3 54629348 54630070 -172894508 + L1MC5 LINE L1 7154 7911 -50 610 220 32 133 chr3 54630163 54630484 -172894094 - L1M4 LINE L1 -3642 2504 2231 1511 133 40 63 chr3 54630484 54630784 -172893794 + AluJb SINE Alu 3 295 -17 610 220 32 133 chr3 54630784 54630867 -172893711 - L1M4 LINE L1 -3915 2231 2141 2338 203 59 34 chr3 54631024 54631098 -172893480 - L1M4 LINE L1 -944 5202 5131 2382 56 23 3 chr3 54631098 54631402 -172893176 - AluY SINE Alu -1 310 1 2338 203 59 34 chr3 54631402 54631973 -172892605 - L1M4 LINE L1 -1015 5131 4541 2314 38 3 7 chr3 54632073 54632362 -172892216 - AluY SINE Alu -23 288 1 336 24 0 0 chr3 54632760 54632801 -172891777 + (CA)n Simple_repeat Simple_repeat 2 42 0 2158 113 3 0 chr3 54632822 54633124 -172891454 + AluSp SINE Alu 1 303 -10 288 0 0 0 chr3 54633124 54633156 -172891422 + (TA)n Simple_repeat Simple_repeat 2 33 0 203 320 0 0 chr3 54633243 54633293 -172891285 - L2 LINE L2 -219 3053 3004 326 253 64 12 chr3 54633490 54633632 -172890946 + L1ME4a LINE L1 5544 5706 -415 2262 81 0 40 chr3 54635763 54636084 -172888494 + AluSg SINE Alu 1 308 -2 2010 87 38 0 chr3 54638002 54638291 -172886287 + AluSq SINE Alu 1 300 -13 22 0 0 0 chr3 54638446 54638468 -172886110 + AT_rich Low_complexity Low_complexity 1 22 0 2050 118 0 10 chr3 54641070 54641374 -172883204 - AluSg SINE Alu -9 301 1 262 235 145 60 chr3 54641904 54642138 -172882440 + L1ME4a LINE L1 5852 6105 -16 280 313 269 0 chr3 54642496 54642678 -172881900 + MIR SINE MIR 21 251 -11 865 197 5 30 chr3 54642751 54642949 -172881629 - AluJo SINE Alu -17 295 103 1606 142 117 3 chr3 54642996 54643312 -172881266 - L1MB4 LINE L1 -1 6179 5828 2358 60 0 3 chr3 54643313 54643492 -172881086 - AluY SINE Alu -12 299 120 186 43 0 0 chr3 54643492 54643515 -172881063 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2358 60 0 3 chr3 54643515 54643635 -172880943 - AluY SINE Alu -191 120 1 294 277 118 8 chr3 54643697 54643816 -172880762 + L1ME4a LINE L1 5791 5922 -199 2105 113 0 25 chr3 54643940 54644259 -172880319 + AluSx SINE Alu 1 311 -1 2226 234 68 10 chr3 54644263 54644675 -172879903 + L1MC4 LINE L1 7170 7629 -413 2350 87 6 0 chr3 54644675 54644986 -172879592 + AluSp SINE Alu 1 313 0 2226 234 68 10 chr3 54644986 54645175 -172879403 + L1MC4 LINE L1 7629 7806 -236 789 139 76 19 chr3 54645199 54645357 -172879221 + LTR8A LTR ERV1 128 294 -433 642 165 45 141 chr3 54645357 54645599 -172878979 + L1MC4 LINE L1 7820 8038 -4 1440 265 33 18 chr3 54645607 54646056 -172878522 + L1MB5 LINE L1 5473 5928 -246 * 3434 204 50 34 chr3 54645668 54646235 -172878343 + L1MD2 LINE L1 5540 6125 -234 3259 147 55 58 chr3 54646235 54646964 -172877614 + LTR8A LTR ERV1 1 727 0 3434 204 50 34 chr3 54646964 54647193 -172877385 + L1MD2 LINE L1 6125 6349 -10 2695 128 43 2 chr3 54647337 54647752 -172876826 - MSTB1 LTR MaLR 0 432 1 638 301 93 9 chr3 54647908 54648124 -172876454 + MIR SINE MIR 29 262 0 183 316 18 0 chr3 54648176 54648233 -172876345 - MIR SINE MIR -110 152 95 2301 94 0 0 chr3 54648398 54648706 -172875872 + AluSg1 SINE Alu 1 308 -1 1562 123 21 196 chr3 54648731 54648975 -172875603 - Tigger2 DNA MER2_type 0 2718 2433 1556 198 0 0 chr3 54648975 54649248 -172875330 + AluJo SINE Alu 1 273 -39 1562 123 21 196 chr3 54649248 54649535 -172875043 - Tigger2 DNA MER2_type -285 2433 1 537 281 140 5 chr3 54649549 54649770 -172874808 - MLT1L LTR MaLR -49 566 316 1370 98 5 0 chr3 54650066 54650296 -172874282 - AluSg/x SINE Alu 0 326 96 230 333 11 0 chr3 54650368 54650458 -172874120 - MLT1I LTR MaLR 0 409 319 198 128 0 0 chr3 54651583 54651622 -172872956 + (T)n Simple_repeat Simple_repeat 1 39 0 223 224 15 45 chr3 54653330 54653397 -172871181 - MER5A DNA MER1_type -105 84 20 604 211 119 53 chr3 54653542 54653769 -172870809 - L1ME1 LINE L1 -18 6148 5907 1266 154 0 26 chr3 54653783 54654016 -172870562 + AluJb SINE Alu 84 310 -2 1649 203 30 43 chr3 54654027 54654346 -172870232 - L1MD2 LINE L1 -451 5977 5662 2160 98 0 37 chr3 54654346 54654671 -172869907 + AluSq SINE Alu 1 313 0 1649 203 30 43 chr3 54654671 54654750 -172869828 - L1MD2 LINE L1 -766 5662 5584 236 313 99 15 chr3 54654892 54655023 -172869555 - L1ME LINE L1 -5923 147 6 735 112 0 0 chr3 54655994 54656092 -172868486 + AluS SINE Alu 2 99 -214 3238 218 61 18 chr3 54656419 54657642 -172866936 - L1MD2 LINE L1 -1670 4545 3376 2187 121 0 0 chr3 54657642 54657947 -172866631 - AluSg SINE Alu -5 305 1 3238 218 61 18 chr3 54657947 54658244 -172866334 - L1MD2 LINE L1 -2839 3376 1559 188 130 22 0 chr3 54658314 54658360 -172866218 + (TA)n Simple_repeat Simple_repeat 1 47 0 2389 150 59 34 chr3 54659549 54659989 -172864589 + LTR32 LTR ERVL 15 465 -6 312 275 50 67 chr3 54660490 54660610 -172863968 - L2 LINE L2 -16 3297 3180 773 124 28 11 chr3 54663011 54663188 -172861390 + GA-rich Low_complexity Low_complexity 1 180 0 349 261 45 0 chr3 54663256 54663367 -172861211 - LTR33A LTR ERVL -77 446 331 2062 103 3 13 chr3 54663803 54664105 -172860473 + AluSx SINE Alu 1 299 -13 1607 232 126 19 chr3 54664431 54664900 -172859678 - LTR40a LTR ERVL 0 519 1 1147 224 96 0 chr3 54664900 54665209 -172859369 - HERVL40 LTR ERVL 0 5530 2794 306 273 102 75 chr3 54665207 54665394 -172859184 - LTR16B-int LTR ERVL -358 4665 4474 * 668 276 70 11 chr3 54665586 54665771 -172858807 - LTR16B-int LTR ERVL -4166 1364 1169 319 272 37 59 chr3 54666257 54666393 -172858185 + MLT1H LTR MaLR 124 256 -293 285 175 117 58 chr3 54666521 54666624 -172857954 + MLT1I LTR MaLR 278 386 -23 709 99 243 0 chr3 54667042 54667153 -172857425 + AluSq/x SINE Alu 2 139 -173 976 161 0 19 chr3 54668599 54668760 -172855818 - FRAM SINE Alu -8 158 1 371 331 81 49 chr3 54669830 54670174 -172854404 - L1ME LINE L1 -474 5647 5293 36 40 0 0 chr3 54670192 54670242 -172854336 + AT_rich Low_complexity Low_complexity 1 50 0 1889 115 0 0 chr3 54670593 54670854 -172853724 + AluSx SINE Alu 1 261 -51 3769 312 55 15 chr3 54670903 54672199 -172852379 - LTR16B-int LTR ERVL -1900 3096 1750 1995 314 48 33 chr3 54672195 54673037 -172851541 - LTR16B-int LTR ERVL -3906 1090 237 * 3317 206 15 23 chr3 54673037 54673277 -172851301 - L1M4c LINE L1 -4632 2014 1774 3749 114 41 2 chr3 54673277 54673784 -172850794 - MER1A DNA MER1_type 0 527 1 3317 206 15 23 chr3 54673784 54674291 -172850287 - L1M4c LINE L1 -4872 1774 1273 2391 98 59 28 chr3 54674335 54674723 -172849855 + LTR38B LTR ERV1 211 610 0 577 256 85 36 chr3 54674932 54675155 -172849423 - L1M4c LINE L1 -6296 246 13 329 371 33 0 chr3 54675170 54675383 -172849195 - LTR16B-int LTR ERVL -4755 241 22 1171 292 64 47 chr3 54675388 54675553 -172849025 - LTR16B LTR ERVL -4 460 299 1220 180 95 37 chr3 54675553 54675848 -172848730 - AluJo SINE Alu 0 312 1 1171 292 64 47 chr3 54675848 54676134 -172848444 - LTR16B LTR ERVL -165 299 1 2317 116 0 0 chr3 54676156 54676467 -172848111 - AluSx SINE Alu -1 311 1 2339 109 0 6 chr3 54677770 54678081 -172846497 - AluSc SINE Alu 0 309 1 3162 166 2 18 chr3 54678147 54678641 -172845937 - MER66B LTR ERV1 0 486 1 898 223 25 10 chr3 54678724 54678921 -172845657 - MER3 DNA MER1_type -9 200 1 268 252 81 36 chr3 54679137 54679248 -172845330 - MIR SINE MIR -18 244 129 258 253 40 19 chr3 54679624 54679713 -172844865 - MIR SINE MIR -122 86 16 1667 192 103 15 chr3 54679822 54680212 -172844366 - MER74A LTR ERVL -14 544 121 335 318 99 7 chr3 54680848 54680999 -172843579 - MIR SINE MIR -6 256 92 2421 160 43 19 chr3 54681165 54681633 -172842945 - L1MB7 LINE L1 -25 6159 5681 2089 165 90 53 chr3 54681631 54682219 -172842359 + L1MCa LINE L1 1337 1946 -4480 * 196 196 54 0 chr3 54733762 54733818 -172790760 + MIR SINE MIR 85 143 -65 246 228 0 0 chr3 54735530 54735588 -172788990 + (CAGAGA)n Simple_repeat Simple_repeat 1 58 0 208 386 0 0 chr3 54736540 54736641 -172787937 + (CA)n Simple_repeat Simple_repeat 1 101 0 205 316 179 0 chr3 54737499 54737594 -172786984 + MIR SINE MIR 35 146 -62 197 289 22 78 chr3 54738325 54738415 -172786163 + L3 LINE CR1 1337 1421 -156 203 333 145 50 chr3 54738565 54738862 -172785716 - L2 LINE L2 -82 3190 2866 219 69 0 0 chr3 54738973 54739002 -172785576 + (TCC)n Simple_repeat Simple_repeat 2 30 0 226 303 147 0 chr3 54739564 54739673 -172784905 + MIR3 SINE MIR 5 129 -79 225 285 83 69 chr3 54741642 54741786 -172782792 - MIR3 SINE MIR -33 175 30 233 383 11 6 chr3 54743900 54744075 -172780503 + (CTGGGG)n Simple_repeat Simple_repeat 2 177 0 1841 144 10 23 chr3 54744996 54745295 -172779283 + AluJo SINE Alu 1 295 -17 1900 133 35 0 chr3 54745296 54745582 -172778996 + AluSx SINE Alu 2 297 -15 1769 159 48 3 chr3 54746003 54746292 -172778286 + AluSx SINE Alu 11 312 0 371 268 43 22 chr3 54746533 54746671 -172777907 - MIR3 SINE MIR -3 205 65 231 354 12 12 chr3 54747142 54747306 -172777272 + G-rich Low_complexity Low_complexity 4 167 0 22 0 0 0 chr3 54747375 54747397 -172777181 + GC_rich Low_complexity Low_complexity 1 22 0 269 276 0 40 chr3 54747707 54747859 -172776719 + G-rich Low_complexity Low_complexity 1 146 0 22 0 0 0 chr3 54747976 54747998 -172776580 + GC_rich Low_complexity Low_complexity 1 22 0 294 29 0 0 chr3 54748684 54748719 -172775859 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 36 40 0 0 chr3 54748720 54748770 -172775808 + GC_rich Low_complexity Low_complexity 1 50 0 27 0 0 0 chr3 54748821 54748848 -172775730 + GC_rich Low_complexity Low_complexity 1 27 0 263 27 0 27 chr3 54748855 54748892 -172775686 + (TCCC)n Simple_repeat Simple_repeat 2 37 0 234 0 0 0 chr3 54748900 54748926 -172775652 + (CTCG)n Simple_repeat Simple_repeat 4 29 0 33 43 0 0 chr3 54748937 54748984 -172775594 + GC_rich Low_complexity Low_complexity 1 47 0 259 239 87 33 chr3 54750310 54750402 -172774176 + MIR3 SINE MIR 82 178 -30 371 252 84 0 chr3 54750891 54750998 -172773580 - MIR SINE MIR -10 252 137 2455 52 0 0 chr3 54751906 54752197 -172772381 - AluY SINE Alu -20 291 1 243 273 61 0 chr3 54752323 54752389 -172772189 - MIR SINE MIR -100 108 39 2045 108 37 0 chr3 54752502 54752797 -172771781 + AluSx SINE Alu 1 306 -6 492 293 73 27 chr3 54752849 54753262 -172771316 + L1MDa LINE L1 1279 1710 -4830 818 265 35 9 chr3 54753310 54753409 -172771169 + L1MDa LINE L1 1693 1788 -4933 3596 139 28 43 chr3 54753409 54754077 -172770501 + L1MC1 LINE L1 5676 6333 0 818 265 35 9 chr3 54754077 54754316 -172770262 + L1MDa LINE L1 1788 2391 -4330 1465 189 85 38 chr3 54754353 54754825 -172769753 - Charlie1b DNA MER1_type -29 494 1 305 273 39 45 chr3 54754826 54754854 -172769724 + L1MDa LINE L1 2383 2410 -4130 1240 194 117 14 chr3 54754854 54755137 -172769441 + AluJb SINE Alu 1 312 0 305 273 39 45 chr3 54755137 54755254 -172769324 + L1MDa LINE L1 2410 3568 -2972 2136 114 7 0 chr3 54755254 54755552 -172769026 + AluSx SINE Alu 1 300 -12 2184 94 0 29 chr3 54756277 54756584 -172767994 - AluSq SINE Alu -4 309 12 555 111 0 25 chr3 54756585 54756666 -172767912 - AluSq/x SINE Alu -203 110 32 982 209 0 25 chr3 54757115 54757311 -172767267 + AluJo SINE Alu 112 302 -10 287 238 0 38 chr3 54757839 54757919 -172766659 - MER5A DNA MER1_type -80 109 33 896 272 52 35 chr3 54758886 54759176 -172765402 + AluSx SINE Alu 11 305 -7 1014 154 0 0 chr3 54759249 54759405 -172765173 + FRAM SINE Alu 20 175 -1 386 291 69 72 chr3 54759538 54760127 -172764451 - L1MC4a LINE L1 -456 5665 5398 304 293 24 0 chr3 54760142 54760224 -172764354 - L1MC4a LINE L1 -795 5351 5268 214 188 0 0 chr3 54761453 54761503 -172763075 + MIR SINE MIR 111 161 -47 478 283 151 10 chr3 54762341 54762418 -172762160 - MIR SINE MIR 0 262 197 2217 82 13 3 chr3 54762418 54762722 -172761856 - AluSp SINE Alu -6 307 1 478 283 151 10 chr3 54762722 54762849 -172761729 - MIR SINE MIR -65 197 29 236 278 7 0 chr3 54763611 54763755 -172760823 + (TGG)n Simple_repeat Simple_repeat 1 145 0 214 232 36 0 chr3 54765060 54765116 -172759462 - L2 LINE L2 -284 2988 2931 1342 166 0 9 chr3 54766785 54767014 -172757564 + AluJo SINE Alu 85 311 -1 197 191 24 0 chr3 54767554 54767596 -172756982 - MIR SINE MIR -56 152 110 345 262 0 40 chr3 54768056 54768205 -172756373 + GA-rich Low_complexity Low_complexity 1 143 0 222 267 42 8 chr3 54768270 54768390 -172756188 + GA-rich Low_complexity Low_complexity 2 125 0 280 342 33 0 chr3 54768885 54769005 -172755573 - MIR SINE MIR -63 145 22 347 302 70 8 chr3 54769159 54769288 -172755290 + MIR SINE MIR 80 216 -46 2481 71 3 0 chr3 54769372 54769683 -172754895 + AluSp SINE Alu 1 312 -1 209 191 0 21 chr3 54770397 54770444 -172754134 + (CGGGG)n Simple_repeat Simple_repeat 3 48 0 196 73 0 49 chr3 54770831 54770872 -172753706 + (CCCCG)n Simple_repeat Simple_repeat 5 43 0 186 133 0 0 chr3 54775688 54775718 -172748860 + (A)n Simple_repeat Simple_repeat 1 30 0 198 308 98 23 chr3 54776901 54777034 -172747544 - L2 LINE L2 -549 2765 2623 275 303 40 20 chr3 54778860 54778959 -172745619 + MIR SINE MIR 30 130 -132 335 228 8 0 chr3 54779111 54779234 -172745344 + (TG)n Simple_repeat Simple_repeat 1 124 0 216 143 0 0 chr3 54779533 54779575 -172745003 + (TG)n Simple_repeat Simple_repeat 1 42 0 354 341 86 48 chr3 54779583 54780167 -172744411 - L1 LINE L1 -2699 3447 2842 222 136 0 0 chr3 54780168 54780212 -172744366 + (TG)n Simple_repeat Simple_repeat 1 44 0 739 273 48 0 chr3 54780230 54780439 -172744139 + Charlie8 DNA MER1_type 17 235 -2182 195 162 0 0 chr3 54780570 54780607 -172743971 + (TG)n Simple_repeat Simple_repeat 1 37 0 240 336 14 7 chr3 54780635 54780778 -172743800 + (TG)n Simple_repeat Simple_repeat 1 144 0 219 340 128 0 chr3 54781821 54781915 -172742663 + L2 LINE L2 3191 3296 -17 3422 199 114 37 chr3 54782799 54782846 -172741732 - L1MD2 LINE L1 -1 6341 6299 2034 138 0 3 chr3 54782846 54783157 -172741421 - AluSx SINE Alu -2 310 1 3422 199 114 37 chr3 54783157 54783946 -172740632 - L1MD2 LINE L1 -43 6299 5572 2329 42 7 55 chr3 54783946 54784256 -172740322 + AluY SINE Alu 1 295 -16 3422 199 114 37 chr3 54784256 54784817 -172739761 - L1MD2 LINE L1 -770 5572 4832 1256 138 0 10 chr3 54784819 54785015 -172739563 + AluJb SINE Alu 86 279 -33 186 71 0 0 chr3 54785026 54785054 -172739524 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 442 277 51 38 chr3 54785074 54785309 -172739269 - L1MD2 LINE L1 -1336 4793 4556 543 330 74 0 chr3 54785313 54785622 -172738956 - L1MD2 LINE L1 -2605 3524 3193 1669 149 37 17 chr3 54786417 54786551 -172738027 + AluSx SINE Alu 1 131 -181 2162 83 7 0 chr3 54786551 54786839 -172737739 + AluSc SINE Alu 6 295 -14 1669 149 37 17 chr3 54786839 54786987 -172737591 + AluSx SINE Alu 131 292 -20 662 0 13 0 chr3 54786987 54787065 -172737513 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 1669 149 37 17 chr3 54787065 54787076 -172737502 + AluSx SINE Alu 292 301 -11 470 271 193 27 chr3 54787290 54787663 -172736915 - L1ME3A LINE L1 -227 5943 5509 1220 151 151 68 chr3 54787781 54788059 -172736519 - AluJb SINE Alu -1 301 1 406 135 60 83 chr3 54788571 54788704 -172735874 - L1MB8 LINE L1 -13 6165 6036 925 121 8 0 chr3 54788772 54788904 -172735674 + FLAM_C SINE Alu 1 133 -10 342 302 116 17 chr3 54788913 54789093 -172735485 - L1MD2 LINE L1 -4775 1535 1127 2033 203 178 6 chr3 54789094 54789576 -172735002 + MLT1F1 LTR MaLR 1 565 -2 323 210 57 16 chr3 54789590 54789714 -172734864 - L1ME3A LINE L1 0 6170 6042 594 231 90 55 chr3 54789739 54790051 -172734527 - L1MD2 LINE L1 -4866 1253 931 1465 137 69 20 chr3 54790059 54790365 -172734213 - MER44D DNA MER2_type -3 606 16 447 321 37 56 chr3 54790388 54790603 -172733975 - L1MD2 LINE L1 -5209 910 700 331 331 34 47 chr3 54790877 54791025 -172733553 - L1MD2 LINE L1 -5430 689 544 309 307 127 45 chr3 54791058 54791302 -172733276 - L1MD2 LINE L1 -5648 471 208 254 261 14 58 chr3 54791351 54791489 -172733089 - L1MD2 LINE L1 -5984 135 4 2166 122 0 0 chr3 54791497 54791793 -172732785 + AluSx SINE Alu 1 296 -16 875 353 86 14 chr3 54791797 54792285 -172732293 - L1MEd LINE L1 -4931 1188 666 212 255 0 0 chr3 54793718 54793765 -172730813 + (CATA)n Simple_repeat Simple_repeat 2 48 0 253 319 0 52 chr3 54795337 54795472 -172729106 + G-rich Low_complexity Low_complexity 1 128 0 1634 115 127 12 chr3 54796493 54796774 -172727804 + AluSx SINE Alu 1 310 0 238 248 79 63 chr3 54797715 54797842 -172726736 - MIR SINE MIR -22 186 69 182 261 109 0 chr3 54798888 54798934 -172725644 - MIR SINE MIR -165 97 47 191 174 130 0 chr3 54799583 54799629 -172724949 + MIR SINE MIR 89 140 -68 1579 135 34 0 chr3 54799946 54800183 -172724395 + AluSx SINE Alu 50 294 -18 573 115 0 0 chr3 54800368 54800446 -172724132 - MADE1 DNA Mariner 0 80 3 448 350 59 3 chr3 54800466 54800786 -172723792 + L1MEc LINE L1 1466 1803 -4593 913 182 13 0 chr3 54800787 54800946 -172723632 + FRAM SINE Alu 12 172 -4 804 279 106 35 chr3 54800946 54801286 -172723292 + L1MEc LINE L1 1847 2210 -4186 2285 101 0 13 chr3 54801680 54801997 -172722581 + AluSq SINE Alu 1 313 0 735 164 0 0 chr3 54801999 54802109 -172722469 - FLAM_A SINE Alu -32 110 1 222 227 15 61 chr3 54803320 54803386 -172721192 - MIR3 SINE MIR -6 202 140 280 352 6 55 chr3 54804021 54804203 -172720375 + L1ME4a LINE L1 5556 5728 -393 356 289 81 61 chr3 54805667 54805864 -172718714 + L1ME4a LINE L1 5769 5969 -152 1074 114 13 0 chr3 54805864 54806022 -172718556 - AluY SINE Alu -17 294 135 251 266 4 0 chr3 54806373 54806444 -172718134 + MIR SINE MIR 88 140 -68 445 191 8 38 chr3 54807810 54807941 -172716637 + L1M4 LINE L1 4572 4698 -1448 308 316 45 23 chr3 54808424 54808557 -172716021 - MIR SINE MIR -96 166 31 198 0 0 0 chr3 54810457 54810479 -172714099 + (T)n Simple_repeat Simple_repeat 1 22 0 1727 162 20 26 chr3 54810505 54810808 -172713770 + AluJb SINE Alu 1 301 -11 475 336 72 40 chr3 54810875 54811098 -172713480 + L2 LINE L2 3082 3311 -2 2388 74 0 10 chr3 54813218 54813528 -172711050 + AluY SINE Alu 1 307 -4 320 279 34 73 chr3 54816027 54816206 -172708372 - MIR3 SINE MIR -7 201 30 231 253 115 0 chr3 54816933 54817020 -172707558 + L2 LINE L2 3003 3099 -173 293 267 69 0 chr3 54820094 54820195 -172704383 - MIR3 SINE MIR -19 189 82 359 228 43 11 chr3 54820512 54820604 -172703974 - MIR SINE MIR -59 149 55 255 237 21 97 chr3 54820731 54820824 -172703754 + MIR3 SINE MIR 114 199 -9 255 303 149 11 chr3 54825053 54825241 -172699337 - L2 LINE L2 -175 3097 2884 21 71 0 0 chr3 54836647 54836689 -172687889 + GC_rich Low_complexity Low_complexity 1 42 0 227 283 20 40 chr3 54840919 54841018 -172683560 + MIR SINE MIR 19 115 -147 2259 79 14 0 chr3 54842136 54842426 -172682152 + AluSp SINE Alu 1 294 -19 263 324 176 7 chr3 54842528 54842670 -172681908 + MIR SINE MIR 87 252 -10 1182 184 80 25 chr3 54843028 54843267 -172681311 + AluJo SINE Alu 31 282 -30 359 249 186 51 chr3 54846519 54846696 -172677882 + MIR SINE MIR 20 220 -42 248 286 57 38 chr3 54847426 54847531 -172677047 + MIR3 SINE MIR 99 205 -3 1679 55 0 0 chr3 54849176 54849376 -172675202 + AluSc SINE Alu 1 200 -109 883 103 0 16 chr3 54849377 54849503 -172675075 + AluSg/x SINE Alu 156 279 -33 360 0 0 0 chr3 54849503 54849543 -172675035 + (CA)n Simple_repeat Simple_repeat 1 40 0 1515 167 89 7 chr3 54849556 54849826 -172674752 + AluJo SINE Alu 5 296 -16 2315 84 0 3 chr3 54850428 54850726 -172673852 + AluSg SINE Alu 1 297 -13 1032 227 83 10 chr3 54850931 54851231 -172673347 - MER2 DNA MER2_type -23 322 1 232 311 7 22 chr3 54851231 54851366 -172673212 - L1M2 LINE L1 -4554 2295 2163 1877 146 0 7 chr3 54851369 54851500 -172673078 + AluSx SINE Alu 3 133 -179 2094 93 0 4 chr3 54851500 54851812 -172672766 + AluSg SINE Alu 1 311 0 1877 146 0 7 chr3 54851812 54851966 -172672612 + AluSx SINE Alu 133 287 -25 6921 67 2 4 chr3 54853123 54854278 -172670300 + L1PA7 LINE L1 5000 6152 -2 639 257 57 44 chr3 54854278 54854375 -172670203 + L1MB7 LINE L1 5873 5967 -217 2316 76 3 10 chr3 54854375 54854676 -172669902 + AluY SINE Alu 13 311 0 1632 54 5 0 chr3 54854676 54854880 -172669698 + L1PA4 LINE L1 5948 6152 -3 639 257 57 44 chr3 54854880 54855077 -172669501 + L1MB7 LINE L1 5966 6172 -12 238 292 7 44 chr3 54855111 54855248 -172669330 - AluYa8 SINE Alu -10 290 159 256 298 116 33 chr3 54855514 54855635 -172668943 - L2 LINE L2 -3 3310 3180 213 220 0 0 chr3 54856026 54856076 -172668502 + CT-rich Low_complexity Low_complexity 2 51 0 193 222 20 0 chr3 54857899 54857998 -172666580 + (CA)n Simple_repeat Simple_repeat 2 102 0 359 278 17 6 chr3 54858047 54858220 -172666358 + (CA)n Simple_repeat Simple_repeat 2 176 0 234 193 0 0 chr3 54858416 54858473 -172666105 + (TG)n Simple_repeat Simple_repeat 2 58 0 288 330 139 0 chr3 54859767 54859882 -172664696 + MIR SINE MIR 50 180 -82 1334 174 58 33 chr3 54861767 54862080 -172662498 + AluJo SINE Alu 23 312 0 620 238 12 0 chr3 54864301 54864558 -172660020 + CT-rich Low_complexity Low_complexity 1 260 0 183 264 0 0 chr3 54864575 54864628 -172659950 + CT-rich Low_complexity Low_complexity 4 56 0 273 293 34 87 chr3 54864809 54865017 -172659561 - MIR3 SINE MIR -11 197 1 510 283 156 11 chr3 54865623 54865803 -172658775 - L2 LINE L2 -1 3312 3107 3533 171 24 51 chr3 54865882 54866038 -172658540 + L1MB3 LINE L1 5214 5373 -810 2125 99 3 0 chr3 54866038 54866348 -172658230 + AluSx SINE Alu 1 311 0 3533 171 24 51 chr3 54866348 54867001 -172657577 + L1MB3 LINE L1 5373 6023 -160 654 276 84 45 chr3 54867018 54867304 -172657274 - LTR16C LTR ERVL 0 491 195 558 272 75 0 chr3 54867498 54867671 -172656907 - L2 LINE L2 -606 2708 2523 233 248 9 0 chr3 54868848 54868961 -172655617 + (TG)n Simple_repeat Simple_repeat 1 114 0 262 267 52 52 chr3 54870884 54871000 -172653578 + L3 LINE CR1 1412 1527 -50 327 96 0 0 chr3 54871397 54871449 -172653129 + (TCCC)n Simple_repeat Simple_repeat 2 53 0 186 301 88 44 chr3 54872353 54872466 -172652112 - L3 LINE CR1 -68 1509 1392 2113 116 0 13 chr3 54873847 54874150 -172650428 + AluSx SINE Alu 1 299 -13 205 257 0 27 chr3 54876028 54876102 -172648476 + (CGGGG)n Simple_repeat Simple_repeat 5 76 0 2123 27 0 34 chr3 54876930 54877222 -172647356 - SVA Other Other -1103 283 2 234 0 0 0 chr3 54877228 54877254 -172647324 + (GGGAGA)n Simple_repeat Simple_repeat 2 27 0 2260 232 144 22 chr3 54877328 54878184 -172646394 - L1ME3A LINE L1 -1 6161 5139 2264 112 0 0 chr3 54878184 54878489 -172646089 - AluSq SINE Alu -8 305 1 2260 232 144 22 chr3 54878489 54878754 -172645824 - L1ME3A LINE L1 -1023 5139 4908 201 74 0 0 chr3 54878864 54878891 -172645687 + (TAG)n Simple_repeat Simple_repeat 1 27 0 221 352 33 0 chr3 54881279 54881370 -172643208 - MIR SINE MIR -119 143 50 4844 79 10 41 chr3 54882051 54882643 -172641935 - PABL_A LTR ERV1 0 660 51 333 0 0 0 chr3 54882643 54882680 -172641898 + (TG)n Simple_repeat Simple_repeat 2 38 0 2139 94 0 7 chr3 54882681 54882978 -172641600 - AluSx SINE Alu -13 299 5 4844 79 10 41 chr3 54882978 54883064 -172641514 - PABL_A LTR ERV1 -608 52 1 270 214 0 0 chr3 54883103 54883159 -172641419 - LTR67 LTR ERVL -6 551 496 307 309 61 83 chr3 54883334 54883564 -172641014 - LTR67 LTR ERVL -236 321 97 1643 150 36 15 chr3 54883828 54884102 -172640476 - AluJb SINE Alu -32 280 1 181 318 0 100 chr3 54884265 54884375 -172640203 - MER5A DNA MER1_type 0 189 91 391 306 105 10 chr3 54885460 54885669 -172638909 + L3 LINE CR1 750 978 -599 2109 77 14 3 chr3 54885710 54885997 -172638581 - AluSq SINE Alu -21 292 3 364 309 28 84 chr3 54887688 54887866 -172636712 + MIR SINE MIR 20 187 -75 723 150 0 8 chr3 54888690 54888810 -172635768 - AluSq/x SINE Alu -192 120 2 598 146 0 41 chr3 54888822 54888945 -172635633 - LOR1b LTR ERV1 -94 367 250 1687 144 27 80 chr3 54888945 54889094 -172635484 - L1M3 LINE L1 -554 5626 5471 837 138 0 36 chr3 54889094 54889232 -172635346 - FLAM_C SINE Alu 0 133 1 1687 144 27 80 chr3 54889232 54889558 -172635020 - L1M3 LINE L1 -709 5471 5175 818 160 0 8 chr3 54889570 54889695 -172634883 - FLAM_C SINE Alu -17 126 3 340 219 0 0 chr3 54889697 54889793 -172634785 - L1M3 LINE L1 -959 5187 5092 603 221 26 106 chr3 54891347 54891487 -172633091 + MER3 DNA MER1_type 1 151 -58 1451 89 84 5 chr3 54891487 54891700 -172632878 + MER30 DNA MER1_type 1 230 0 1640 172 0 11 chr3 54891701 54891986 -172632592 + AluJb SINE Alu 24 305 -7 603 221 26 106 chr3 54891986 54892069 -172632509 + MER3 DNA MER1_type 150 208 -1 1260 130 0 20 chr3 54892351 54892551 -172632027 + AluJo SINE Alu 1 196 -116 273 334 106 19 chr3 54893201 54893437 -172631141 + MIR SINE MIR 3 255 -7 229 261 102 34 chr3 54893918 54894006 -172630572 + MER5A DNA MER1_type 72 165 -24 288 297 210 17 chr3 54894125 54894597 -172629981 - L2 LINE L2 -12 3301 2714 320 240 40 48 chr3 54894670 54894795 -172629783 - L2 LINE L2 -905 2409 2286 779 253 176 0 chr3 54895213 54895525 -172629053 - L1M4 LINE L1 -2557 3589 3223 510 233 54 8 chr3 54897424 54897553 -172627025 + MIR SINE MIR 57 191 -71 209 274 95 24 chr3 54899221 54899305 -172625273 + MIR SINE MIR 107 196 -66 2253 107 3 0 chr3 54899366 54899675 -172624903 + AluSg SINE Alu 1 310 0 1538 149 17 57 chr3 54899935 54900236 -172624342 - AluJo SINE Alu -23 289 1 1248 106 14 19 chr3 54900357 54900564 -172624014 + L1MA7 LINE L1 5730 5935 -356 354 151 0 17 chr3 54900564 54900635 -172623943 + Alu SINE Alu 1 56 -244 760 181 0 32 chr3 54900635 54900790 -172623788 + AluJb SINE Alu 163 312 0 1225 164 142 26 chr3 54900790 54901100 -172623478 + L1MA7 LINE L1 5942 6287 -4 1953 78 0 0 chr3 54901119 54901374 -172623204 + AluY SINE Alu 1 255 -56 194 320 48 19 chr3 54904355 54904458 -172620120 - MIR3 SINE MIR -10 198 93 182 310 17 0 chr3 54906551 54906609 -172617969 + L3 LINE CR1 1413 1471 -106 2279 68 0 32 chr3 54906935 54907245 -172617333 - AluY SINE Alu -9 302 3 459 163 12 0 chr3 54907260 54907340 -172617238 - MER51A LTR ERV1 -83 551 471 217 224 75 75 chr3 54907509 54907616 -172616962 + MIR SINE MIR 53 159 -49 338 263 10 30 chr3 54908345 54908444 -172616134 - MIR SINE MIR 0 262 166 436 234 129 8 chr3 54908518 54908642 -172615936 - L2 LINE L2 0 3313 3175 363 125 0 0 chr3 54908662 54908718 -172615860 - MADE1 DNA Mariner 0 80 25 399 254 67 8 chr3 54908748 54908882 -172615696 - L2 LINE L2 -152 3161 3020 250 177 177 0 chr3 54908886 54908948 -172615630 + MER58 DNA MER1_type 27 99 -287 851 153 0 0 chr3 54908948 54909072 -172615506 + FLAM_C SINE Alu 1 124 -19 432 0 0 0 chr3 54909073 54909121 -172615457 + (TAAA)n Simple_repeat Simple_repeat 1 48 0 1248 210 61 13 chr3 54909129 54909439 -172615139 - MLT1D LTR MaLR -133 372 48 6978 175 21 21 chr3 54909446 54911343 -172613235 - L1M3 LINE L1 -492 5688 3794 1161 298 0 129 chr3 54911344 54911686 -172612892 + AluJb SINE Alu 1 298 -14 223 138 11 92 chr3 54912605 54912692 -172611886 + (CCCCG)n Simple_repeat Simple_repeat 2 81 0 25 0 0 0 chr3 54912704 54912729 -172611849 + GC_rich Low_complexity Low_complexity 1 25 0 212 255 0 0 chr3 54912920 54912967 -172611611 - MIR SINE MIR -67 141 95 2448 56 3 0 chr3 54913850 54914153 -172610425 + AluSc SINE Alu 1 304 -5 1026 144 0 0 chr3 54915994 54916147 -172608431 - AluSg/x SINE Alu -10 302 150 409 118 15 15 chr3 54916273 54916341 -172608237 - AluS SINE Alu -243 69 2 1966 113 226 5 chr3 54916342 54916750 -172607828 + L1MB3 LINE L1 5685 6182 -1 432 277 52 56 chr3 54917268 54917481 -172607097 - MIR SINE MIR -43 219 8 1948 112 23 16 chr3 54917605 54917908 -172606670 - AluSg SINE Alu -5 305 1 2408 52 20 3 chr3 54917950 54918255 -172606323 - AluY SINE Alu -1 310 1 2392 76 0 9 chr3 54918261 54918576 -172606002 - AluSx SINE Alu 0 312 1 276 77 0 0 chr3 54919309 54919348 -172605230 + (CCCCG)n Simple_repeat Simple_repeat 5 43 0 204 40 0 0 chr3 54919389 54919414 -172605164 + (A)n Simple_repeat Simple_repeat 1 25 0 2499 53 0 0 chr3 54919624 54919927 -172604651 + AluSc SINE Alu 1 303 -6 7366 33 3 138 chr3 54920931 54922130 -172602448 + SVA Other Other 363 1405 0 317 93 0 0 chr3 54923305 54923348 -172601230 + LTR23 LTR ERV1 320 362 -75 186 43 0 0 chr3 54923348 54923371 -172601207 + (GAAA)n Simple_repeat Simple_repeat 3 25 0 2013 140 0 9 chr3 54923373 54923688 -172600890 + AluSx SINE Alu 1 312 0 395 188 0 0 chr3 54923879 54923943 -172600635 - AluS SINE Alu -236 64 1 1516 185 26 26 chr3 54924457 54924759 -172599819 + AluJb SINE Alu 1 302 0 658 293 42 33 chr3 54925127 54925461 -172599117 - L1MEc LINE L1 -5561 835 499 610 264 17 6 chr3 54925501 54925675 -172598903 - L1MEc LINE L1 -6094 302 127 649 112 0 10 chr3 55125682 55125780 -172398798 + AluSq SINE Alu 140 236 -77 186 118 0 0 chr3 55127017 55127051 -172397527 + (CA)n Simple_repeat Simple_repeat 2 35 0 325 24 0 0 chr3 55127301 55127342 -172397236 - MER41A-int LTR ERV1 -3232 4305 4265 701 102 0 0 chr3 55127347 55127445 -172397133 + AluS SINE Alu 2 99 -214 2306 127 26 26 chr3 55127445 55127623 -172396955 - MER41A-int LTR ERV1 -7369 387 210 2138 143 10 0 chr3 55127623 55127930 -172396648 - AluSx SINE Alu -2 310 1 2306 127 26 26 chr3 55127930 55128138 -172396440 - MER41A-int LTR ERV1 -7545 211 1 271 154 58 0 chr3 55128169 55128221 -172396357 - MER41A-int LTR ERV1 -5891 55 1 2814 94 0 0 chr3 55128221 55128602 -172395976 - MER41A LTR ERV1 0 554 174 404 245 0 0 chr3 55128760 55128854 -172395724 + THE1A LTR MaLR 262 355 0 410 343 65 12 chr3 55129810 55130055 -172394523 + MIR SINE MIR 5 262 0 612 271 92 42 chr3 55131222 55131506 -172393072 - HERVL40 LTR ERVL -1723 3807 3510 643 229 132 19 chr3 55131506 55131711 -172392867 - HERVL40 LTR ERVL -3193 2337 2110 1121 182 40 12 chr3 55132120 55132367 -172392211 - AluSx SINE Alu 0 312 59 3857 24 0 16 chr3 55132467 55132890 -172391688 + SVA Other Other 971 1386 0 2292 100 7 3 chr3 55132910 55133211 -172391367 + AluSp SINE Alu 1 302 -11 222 37 0 0 chr3 55133293 55133320 -172391258 + (A)n Simple_repeat Simple_repeat 1 27 0 2362 94 13 0 chr3 55133385 55133694 -172390884 - AluSp SINE Alu 0 313 1 2553 79 0 0 chr3 55133703 55134007 -172390571 - AluY SINE Alu -7 304 1 329 272 11 0 chr3 55134219 55134311 -172390267 + MIR SINE MIR 39 131 -77 896 150 0 0 chr3 55134358 55134498 -172390080 - MER5A DNA MER1_type 0 189 50 1100 75 8 0 chr3 55134499 55134632 -172389946 - AluSq/x SINE Alu -175 138 5 555 184 72 8 chr3 55135141 55135266 -172389312 - FLAM_A SINE Alu 0 133 1 978 102 0 0 chr3 55135284 55135412 -172389166 + AluSg/x SINE Alu 179 306 -4 224 299 145 0 chr3 55135762 55135901 -172388677 - MIR SINE MIR -63 145 5 1975 151 10 16 chr3 55136051 55136363 -172388215 + AluJo SINE Alu 1 310 -2 312 298 11 0 chr3 55137167 55137261 -172387317 + CT-rich Low_complexity Low_complexity 3 97 0 2184 79 9 76 chr3 55137322 55137650 -172386928 + AluSp SINE Alu 3 308 -5 319 247 31 0 chr3 55137748 55137845 -172386733 + L1 LINE L1 4607 4706 -1440 2060 121 36 0 chr3 55138054 55138335 -172386243 + AluSx SINE Alu 1 291 -21 995 86 0 0 chr3 55138945 55139062 -172385516 + AluSq/x SINE Alu 1 117 -196 297 250 31 100 chr3 55139106 55139266 -172385312 - MIR SINE MIR -94 168 20 2331 95 10 0 chr3 55139333 55139627 -172384951 + AluSx SINE Alu 1 297 -15 518 173 73 9 chr3 55139946 55140056 -172384522 - LTR54 LTR ERV1 -313 197 81 1348 105 0 3 chr3 55140056 55140303 -172384275 - AluSq SINE Alu -2 311 2 398 95 0 32 chr3 55140303 55140366 -172384212 - LTR54B LTR ERV1 -415 83 23 5195 204 36 14 chr3 55140366 55141197 -172383381 - MER21B-int LTR ERV1 -3089 1102 240 1977 133 0 48 chr3 55141197 55141372 -172383206 - AluJb SINE Alu -12 300 145 2262 123 3 0 chr3 55141372 55141682 -172382896 - AluSp SINE Alu -2 311 1 1977 133 0 48 chr3 55141682 55141821 -172382757 - AluJb SINE Alu -167 145 1 5195 204 36 14 chr3 55141821 55142066 -172382512 - MER21B-int LTR ERV1 -3951 240 2 1001 168 55 20 chr3 55142092 55142294 -172382284 - MER21B LTR ERV1 -3 860 652 1395 123 0 0 chr3 55142295 55142474 -172382104 - AluSx SINE Alu -133 179 1 728 191 0 0 chr3 55142477 55142618 -172381960 - FLAM_C SINE Alu -1 142 2 1305 155 9 13 chr3 55142623 55142849 -172381729 - MER21B LTR ERV1 -550 313 89 287 167 0 0 chr3 55142955 55143009 -172381569 + L1ME1 LINE L1 5914 5967 -217 2518 80 3 0 chr3 55143010 55143311 -172381267 + AluSp SINE Alu 1 302 -11 1171 146 0 0 chr3 55143311 55143482 -172381096 + AluSg/x SINE Alu 132 302 -8 611 255 0 7 chr3 55143482 55143631 -172380947 + L1ME1 LINE L1 5960 6107 -59 249 302 0 42 chr3 55143910 55144006 -172380572 + MIR3 SINE MIR 71 162 -46 359 208 50 20 chr3 55144111 55144212 -172380366 - MER103 DNA DNA -49 117 14 2674 40 0 0 chr3 55144901 55145200 -172379378 + AluY SINE Alu 1 299 -12 771 139 15 44 chr3 55145339 55145476 -172379102 - FLAM_C SINE Alu 0 133 1 2456 42 0 3 chr3 55145589 55145896 -172378682 - AluY SINE Alu 0 306 1 850 179 25 19 chr3 55145957 55146119 -172378459 + AluJb SINE Alu 137 299 -13 207 258 45 0 chr3 55146558 55146624 -172377954 - L2 LINE L2 -1 3271 3203 751 247 83 70 chr3 55146778 55146974 -172377604 - L2 LINE L2 -1244 2070 1867 2043 84 56 25 chr3 55146974 55147259 -172377319 + AluSx SINE Alu 3 296 -16 751 247 83 70 chr3 55147259 55147362 -172377216 - L2 LINE L2 -1447 1867 1767 621 104 0 0 chr3 55147470 55147566 -172377012 + MER41-int LTR ERV1 4216 4311 -1635 2017 125 17 0 chr3 55147566 55147854 -172376724 - AluSc SINE Alu -16 293 1 283 183 141 14 chr3 55147860 55147971 -172376607 - AluSg/x SINE Alu 0 321 202 2416 90 0 3 chr3 55148244 55148554 -172376024 - AluY SINE Alu -2 309 1 1029 163 0 6 chr3 55148717 55148883 -172375695 + MER45A DNA AcHobo 14 178 0 224 319 42 46 chr3 55149257 55149436 -172375142 + MIR SINE MIR 19 192 -62 1765 132 4 4 chr3 55151265 55151508 -172373070 + AluSg SINE Alu 1 243 -67 2511 73 0 0 chr3 55151525 55151825 -172372753 + AluY SINE Alu 1 300 -11 2335 88 0 3 chr3 55152377 55152693 -172371885 - AluSq SINE Alu 0 315 1 956 118 0 39 chr3 55153073 55153226 -172371352 + AluSc SINE Alu 163 309 0 21 36 0 0 chr3 55153481 55153509 -172371069 + GC_rich Low_complexity Low_complexity 1 28 0 2846 84 38 90 chr3 55153560 55154062 -172370516 + SVA Other Other 393 868 -518 525 162 19 29 chr3 55154535 55154640 -172369938 + AluSq/x SINE Alu 2 105 -207 1949 124 4 0 chr3 55154658 55154924 -172369654 - AluSq SINE Alu -16 297 31 2318 101 13 0 chr3 55154945 55155253 -172369325 - AluSx SINE Alu 0 312 1 536 99 49 0 chr3 55155631 55155712 -172368866 + AluS SINE Alu 2 86 -227 1537 238 33 87 chr3 55155716 55156339 -172368239 + LTR9 LTR ERV1 19 612 0 1911 246 74 6 chr3 55156349 55156538 -172368040 + REP3 LTR ERV 4 179 -383 291 28 0 0 chr3 55156538 55156574 -172368004 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2005 95 42 0 chr3 55156581 55156845 -172367733 - AluSx SINE Alu -37 275 1 1911 246 74 6 chr3 55156845 55157147 -172367431 + REP3 LTR ERV 184 537 -25 780 163 115 48 chr3 55157166 55157214 -172367364 + Charlie1 DNA MER1_type 2404 2447 -314 234 0 0 0 chr3 55157214 55157240 -172367338 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2073 95 15 11 chr3 55157244 55157517 -172367061 - AluSq SINE Alu -35 278 5 780 163 115 48 chr3 55157517 55157733 -172366845 + Charlie1 DNA MER1_type 2449 2691 -70 1737 150 27 59 chr3 55157733 55157823 -172366755 - LTR8 LTR ERV1 0 691 600 2601 53 0 0 chr3 55157823 55158124 -172366454 + AluY SINE Alu 1 301 -10 1737 150 27 59 chr3 55158124 55158457 -172366121 - LTR8 LTR ERV1 -91 600 313 2024 82 89 4 chr3 55158457 55158737 -172365841 + AluSp SINE Alu 1 304 -9 3001 6 0 0 chr3 55158745 55159061 -172365517 + AluYb8 SINE Alu 1 316 -2 1139 118 0 54 chr3 55159076 55159262 -172365316 + AluSg/x SINE Alu 121 296 -16 1231 190 81 32 chr3 55159288 55159557 -172365021 - LTR8A LTR ERV1 -402 325 38 3713 131 39 6 chr3 55159557 55160181 -172364397 - LTR9B LTR ERV1 0 644 1 1231 190 81 32 chr3 55160181 55160221 -172364357 - LTR8A LTR ERV1 -689 38 1 486 145 0 0 chr3 55160221 55160295 -172364283 + Charlie1 DNA MER1_type 2688 2761 0 323 247 0 12 chr3 55161046 55161127 -172363451 + Charlie5 DNA MER1_type 16 95 -2517 2263 63 11 3 chr3 55161138 55161422 -172363156 - AluSg SINE Alu -22 288 3 23 0 0 0 chr3 55161424 55161447 -172363131 + AT_rich Low_complexity Low_complexity 1 23 0 1567 122 28 8 chr3 55161457 55161704 -172362874 - AluSx SINE Alu -60 252 1 975 111 7 0 chr3 55161712 55161847 -172362731 - AluSg/x SINE Alu -20 292 157 2385 64 0 7 chr3 55161958 55162282 -172362296 + AluY SINE Alu 1 322 0 2720 44 14 2 chr3 55162301 55162799 -172361779 + LTR10C LTR ERV1 1 590 -1 875 75 0 0 chr3 55162800 55162920 -172361658 + MER4E LTR ERV1 660 779 0 2451 98 0 0 chr3 55162941 55163248 -172361330 - AluSq SINE Alu 0 313 7 1920 119 4 0 chr3 55163265 55163525 -172361053 - AluSq SINE Alu 0 313 53 3822 59 8 8 chr3 55163525 55164035 -172360543 + LTR10D LTR ERV1 3 512 -1 401 151 9 35 chr3 55164036 55164096 -172360482 - AluSq SINE Alu -245 58 47 2069 127 6 35 chr3 55164096 55164411 -172360167 - AluSx SINE Alu -6 306 1 401 151 9 35 chr3 55164411 55164457 -172360121 - AluSq SINE Alu -256 47 1 270 204 0 0 chr3 55164433 55164482 -172360096 + LTR47B LTR ERVL 26 74 -369 * 1660 165 30 4 chr3 55164508 55164775 -172359803 + AluJo SINE Alu 24 297 -15 1986 159 3 0 chr3 55164777 55165085 -172359493 + AluSx SINE Alu 1 309 -3 2404 76 0 16 chr3 55165108 55165411 -172359167 + AluY SINE Alu 1 298 -13 2276 115 13 0 chr3 55165584 55165888 -172358690 + AluSx SINE Alu 1 308 -4 2241 144 0 0 chr3 55166224 55166536 -172358042 + AluSx SINE Alu 1 312 0 869 94 0 0 chr3 55166560 55166666 -172357912 + FLAM_C SINE Alu 13 118 -25 2175 122 0 19 chr3 55166924 55167235 -172357343 + AluSq SINE Alu 1 305 -8 296 276 239 0 chr3 55167415 55167549 -172357029 + MIR3 SINE MIR 18 183 -25 1924 141 0 45 chr3 55167555 55167867 -172356711 - AluJo SINE Alu -14 298 1 1035 124 11 56 chr3 55169017 55169195 -172355383 - AluSx SINE Alu -142 170 1 2062 108 44 0 chr3 55169221 55169518 -172355060 + AluY SINE Alu 1 310 -1 941 216 141 23 chr3 55169523 55169828 -172354750 - MSTD LTR MaLR -55 341 1 703 179 0 0 chr3 55169864 55169981 -172354597 + FLAM_A SINE Alu 16 132 -10 2279 81 41 3 chr3 55169983 55170278 -172354300 + AluY SINE Alu 1 306 -5 225 208 19 0 chr3 55170279 55170332 -172354246 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 476 290 61 96 chr3 55170492 55170674 -172353904 - L1MEd LINE L1 -4779 1350 1163 2195 111 16 16 chr3 55170674 55170981 -172353597 + AluSc SINE Alu 2 308 -1 2238 105 13 3 chr3 55170991 55171296 -172353282 + AluSq SINE Alu 1 308 -5 476 290 61 96 chr3 55171296 55171495 -172353083 - L1MEd LINE L1 -4975 1154 976 2571 84 0 0 chr3 55171497 55171805 -172352773 - AluSp SINE Alu -5 308 1 1541 118 0 0 chr3 55171856 55172059 -172352519 - AluSg/x SINE Alu -23 289 87 2362 107 0 3 chr3 55172059 55172366 -172352212 - AluSq SINE Alu -6 307 1 1868 107 71 4 chr3 55172368 55172648 -172351930 - AluSx SINE Alu -13 299 1 1999 159 0 6 chr3 55172651 55172965 -172351613 - AluJb SINE Alu 0 312 1 1009 150 0 46 chr3 55173016 55173189 -172351389 + AluJo SINE Alu 13 177 -135 2385 94 0 0 chr3 55173243 55173540 -172351038 + AluSq SINE Alu 1 297 -16 309 308 37 0 chr3 55173645 55173752 -172350826 - MIR3 SINE MIR -53 155 45 804 146 0 0 chr3 55175157 55175287 -172349291 - FLAM_C SINE Alu -3 130 1 1468 226 85 35 chr3 55175294 55175458 -172349120 - L1MC3 LINE L1 -1 8041 7887 234 0 0 0 chr3 55175458 55175484 -172349094 + (CA)n Simple_repeat Simple_repeat 2 27 0 1468 226 85 35 chr3 55175484 55175601 -172348977 - L1MC3 LINE L1 -155 7887 7777 2067 111 0 4 chr3 55175601 55175880 -172348698 + AluSg SINE Alu 5 282 -28 190 0 0 0 chr3 55175880 55175901 -172348677 + (TAA)n Simple_repeat Simple_repeat 2 180 0 1468 226 85 35 chr3 55175901 55176133 -172348445 - L1MC3 LINE L1 -265 7777 7512 2300 125 3 0 chr3 55176141 55176453 -172348125 - AluSq SINE Alu 0 313 1 343 258 266 8 chr3 55176721 55176845 -172347733 + MER5A DNA MER1_type 4 159 -30 212 337 142 56 chr3 55176970 55177237 -172347341 + L2 LINE L2 2933 3222 -50 1832 175 0 10 chr3 55177404 55177718 -172346860 - AluJb SINE Alu -1 311 1 199 269 75 0 chr3 55177723 55177790 -172346788 - MIR3 SINE MIR -48 160 89 789 150 0 0 chr3 55177926 55178039 -172346539 - FLAM_A SINE Alu -14 128 16 2493 93 3 0 chr3 55178063 55178373 -172346205 + AluSp SINE Alu 1 311 -2 24 0 0 0 chr3 55178875 55178899 -172345679 + AT_rich Low_complexity Low_complexity 1 24 0 846 166 28 7 chr3 55179014 55179159 -172345419 + AluJb SINE Alu 142 289 -23 559 164 19 29 chr3 55179299 55179403 -172345175 - AluSq/x SINE Alu -208 104 2 21 0 0 0 chr3 55180769 55180790 -172343788 + AT_rich Low_complexity Low_complexity 1 21 0 192 321 71 82 chr3 55182149 55182333 -172342245 + L2 LINE L2 2804 2985 -328 * 204 231 185 81 chr3 55182323 55182496 -172342082 + L2 LINE L2 2734 2924 -390 2172 111 7 3 chr3 55182526 55182815 -172341763 - AluSc SINE Alu -19 290 1 1903 69 0 0 chr3 55182818 55183049 -172341529 - AluSg/x SINE Alu -13 297 67 447 211 46 46 chr3 55183056 55183165 -172341413 + L2 LINE L2 3195 3303 -10 2245 90 10 3 chr3 55183279 55183580 -172340998 + AluSg1 SINE Alu 1 303 -6 1764 183 28 0 chr3 55183842 55184132 -172340446 + AluJb SINE Alu 1 298 -14 300 269 19 19 chr3 55184199 55184307 -172340271 + AluSp SINE Alu 13 120 -183 2038 133 7 3 chr3 55184471 55184764 -172339814 + AluSx SINE Alu 1 294 -18 2338 96 13 0 chr3 55184766 55185067 -172339511 + AluSp SINE Alu 1 305 -8 1259 132 0 0 chr3 55185067 55185241 -172339337 + AluSp SINE Alu 134 307 -6 1751 208 52 52 chr3 55185246 55185308 -172339270 + L1ME1 LINE L1 5666 5727 -439 1964 157 7 0 chr3 55185308 55185608 -172338970 + AluJb SINE Alu 1 302 -10 2102 78 64 18 chr3 55185608 55185890 -172338688 + AluSg SINE Alu 1 295 -15 1751 208 52 52 chr3 55185890 55186322 -172338256 + L1ME1 LINE L1 5725 6161 -5 2359 104 7 0 chr3 55186341 55186648 -172337930 + AluSc SINE Alu 1 309 0 1946 124 4 0 chr3 55186669 55186935 -172337643 + AluSq SINE Alu 31 297 -16 2427 77 13 0 chr3 55186937 55187235 -172337343 + AluSp SINE Alu 1 302 -11 511 143 13 0 chr3 55187244 55187321 -172337257 + AluS SINE Alu 2 79 -233 619 181 175 19 chr3 55187328 55187488 -172337090 + MER5A DNA MER1_type 1 185 -4 393 295 114 26 chr3 55187538 55187731 -172336847 - MIR SINE MIR -42 220 11 475 354 17 6 chr3 55188591 55188766 -172335812 - MIR SINE MIR -64 198 22 2355 98 0 0 chr3 55189310 55189605 -172334973 - AluSx SINE Alu -17 295 1 2080 130 33 0 chr3 55190015 55190314 -172334264 - AluSx SINE Alu -3 309 1 2239 103 4 0 chr3 55190443 55190752 -172333826 - AluSq SINE Alu 0 310 1 691 173 0 0 chr3 55190754 55190864 -172333714 - AluJo/FLAM SINE Alu -201 111 2 1613 162 47 34 chr3 55190868 55191165 -172333413 - AluJo SINE Alu -11 301 1 312 189 81 40 chr3 55191428 55191502 -172333076 - L1ME3 LINE L1 -4 6158 6082 2282 112 0 0 chr3 55191505 55191800 -172332778 - AluSx SINE Alu -17 295 1 1125 129 0 0 chr3 55191958 55192113 -172332465 + AluSq SINE Alu 142 296 -17 2374 92 7 3 chr3 55192114 55192418 -172332160 + AluSp SINE Alu 1 305 -8 219 197 76 45 chr3 55192830 55192896 -172331682 + L2 LINE L2 3016 3083 -189 1907 199 39 122 chr3 55193142 55193756 -172330822 + MLT1F1 LTR MaLR 1 563 -4 2350 102 3 3 chr3 55193838 55194141 -172330437 + AluSp SINE Alu 1 303 -10 225 0 0 0 chr3 55194172 55194197 -172330381 + (CAGGC)n Simple_repeat Simple_repeat 4 28 0 2735 45 0 0 chr3 55194266 55194574 -172330004 + AluY SINE Alu 1 308 -3 2360 114 0 0 chr3 55194662 55194960 -172329618 - AluSx SINE Alu -14 298 1 196 326 138 47 chr3 55194981 55195257 -172329321 + L2 LINE L2 2996 3296 -17 1699 157 70 33 chr3 55195259 55195558 -172329020 + AluJb SINE Alu 2 311 -1 2244 92 20 13 chr3 55195646 55195949 -172328629 + AluSx SINE Alu 1 305 -7 1919 163 10 0 chr3 55196398 55196698 -172327880 - AluJo SINE Alu -3 309 7 216 0 0 0 chr3 55196699 55196723 -172327855 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1549 62 41 5 chr3 55196723 55196918 -172327660 - AluSp SINE Alu -27 286 85 32 43 0 0 chr3 55197011 55197057 -172327521 + AT_rich Low_complexity Low_complexity 1 46 0 1994 122 4 0 chr3 55197157 55197428 -172327150 + AluSx SINE Alu 30 301 -11 306 0 0 0 chr3 55197615 55197649 -172326929 + (TG)n Simple_repeat Simple_repeat 1 34 0 691 162 0 0 chr3 55197654 55197753 -172326825 - AluJ SINE Alu -30 282 184 710 144 48 40 chr3 55197754 55197879 -172326699 - AluJ SINE Alu -185 127 2 2425 78 0 3 chr3 55197916 55198211 -172326367 + AluY SINE Alu 1 294 -17 738 165 9 0 chr3 55198224 55198339 -172326239 + FLAM_C SINE Alu 5 120 -23 2394 102 0 6 chr3 55198351 55198664 -172325914 + AluSx SINE Alu 2 312 0 2289 92 10 0 chr3 55198673 55198965 -172325613 + AluSp SINE Alu 1 295 -18 30 27 0 0 chr3 55198968 55199005 -172325573 + AT_rich Low_complexity Low_complexity 1 37 0 2249 107 7 7 chr3 55200176 55200486 -172324092 + AluSx SINE Alu 1 310 -2 255 219 311 26 chr3 55201339 55201355 -172323223 - MIR SINE MIR -3 259 249 2178 109 7 0 chr3 55201355 55201667 -172322911 + AluSx SINE Alu 1 314 0 255 219 311 26 chr3 55201667 55201800 -172322778 - MIR SINE MIR -13 249 66 339 169 121 0 chr3 55201906 55201989 -172322589 - L2 LINE L2 -18 3254 3162 985 191 0 0 chr3 55202111 55202268 -172322310 + FAM SINE Alu 2 158 -17 224 316 202 36 chr3 55202359 55202612 -172321966 + L2 LINE L2 3019 3313 0 21 0 0 0 chr3 55203532 55203553 -172321025 + AT_rich Low_complexity Low_complexity 1 21 0 1395 151 16 83 chr3 55203569 55203713 -172320865 + AluJb SINE Alu 13 126 -186 450 0 0 0 chr3 55203713 55203763 -172320815 + (CA)n Simple_repeat Simple_repeat 1 50 0 1395 151 16 83 chr3 55203763 55203930 -172320648 + AluJb SINE Alu 126 303 -9 2137 75 12 100 chr3 55203975 55204306 -172320272 - AluSx SINE Alu -10 302 1 1500 215 129 62 chr3 55204335 55205074 -172319504 + L1MC5 LINE L1 6865 7652 -309 2322 98 0 3 chr3 55205081 55205386 -172319192 + AluSx SINE Alu 2 305 -7 3479 176 116 12 chr3 55205435 55205530 -172319048 - MER21B LTR ERV1 -8 855 771 216 0 0 0 chr3 55205530 55205554 -172319024 + (CAAG)n Simple_repeat Simple_repeat 3 26 0 3479 176 116 12 chr3 55205554 55206232 -172318346 - MER21B LTR ERV1 -92 771 1 24 53 0 0 chr3 55206280 55206318 -172318260 + AT_rich Low_complexity Low_complexity 1 38 0 2092 115 3 14 chr3 55206444 55206739 -172317839 + AluSq SINE Alu 1 292 -21 1394 128 5 0 chr3 55206739 55206935 -172317643 + AluSg/x SINE Alu 98 294 -16 888 104 0 16 chr3 55206945 55207070 -172317508 + L1MA1 LINE L1 6180 6302 0 189 0 0 0 chr3 55207073 55207094 -172317484 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 854 126 0 49 chr3 55207103 55207246 -172317332 + AluJo SINE Alu 1 136 -176 234 91 0 0 chr3 55207246 55207279 -172317299 + MSTB2 LTR MaLR 413 445 -12 2388 92 3 0 chr3 55207290 55207593 -172316985 + AluY SINE Alu 1 304 -7 551 175 21 0 chr3 55207629 55207726 -172316852 + MER2 DNA MER2_type 1 99 -246 1178 139 0 6 chr3 55207726 55207891 -172316687 + AluJb SINE Alu 1 164 -148 361 265 86 0 chr3 55207891 55208008 -172316570 + MER103 DNA DNA 37 163 -3 285 392 16 0 chr3 55208122 55208247 -172316331 - MIR SINE MIR -61 147 21 2332 90 23 0 chr3 55208259 55208560 -172316018 - AluSx SINE Alu -2 310 3 1647 104 156 11 chr3 55209298 55209568 -172315010 - AluSg1 SINE Alu 0 309 1 2077 109 0 4 chr3 55209599 55209875 -172314703 + AluSx SINE Alu 1 275 -37 204 40 0 0 chr3 55209879 55209904 -172314674 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 241 227 113 85 chr3 55210595 55210658 -172313920 + MIR SINE MIR 118 178 -84 1616 95 0 0 chr3 55210658 55210858 -172313720 + AluSg/x SINE Alu 80 279 -31 468 0 0 0 chr3 55210858 55210910 -172313668 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 241 227 113 85 chr3 55210910 55210986 -172313592 + MIR SINE MIR 177 262 0 323 240 40 0 chr3 55211103 55211178 -172313400 - MIR SINE MIR -77 185 108 611 186 42 8 chr3 55211713 55211831 -172312747 - AluJb SINE Alu -15 297 176 1534 153 0 4 chr3 55211839 55212074 -172312504 + AluJb SINE Alu 51 284 -28 282 87 0 0 chr3 55212081 55212127 -172312451 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 311 293 91 34 chr3 55212436 55212699 -172311879 + L2 LINE L2 2807 3084 -188 36 23 0 0 chr3 55212722 55212765 -172311813 + AT_rich Low_complexity Low_complexity 1 43 0 2480 74 0 0 chr3 55212769 55213066 -172311512 + AluY SINE Alu 1 297 -14 1812 73 0 5 chr3 55213093 55213312 -172311266 - AluSg SINE Alu -92 218 1 692 207 0 0 chr3 55213312 55213428 -172311150 - AluJo/FLAM SINE Alu -195 117 2 2086 129 3 7 chr3 55213435 55213738 -172310840 - AluSg SINE Alu -8 302 1 2064 105 7 0 chr3 55214149 55214426 -172310152 - AluY SINE Alu -32 279 1 2192 101 31 0 chr3 55214508 55214823 -172309755 - AluSg SINE Alu 0 324 1 375 294 41 14 chr3 55214904 55215050 -172309528 + LTR67 LTR ERVL 15 164 -393 240 316 58 0 chr3 55215343 55215447 -172309131 + MIR SINE MIR 18 127 -81 2191 125 0 13 chr3 55215541 55215854 -172308724 + AluSc SINE Alu 1 309 0 263 310 75 0 chr3 55215965 55216152 -172308426 + L1M4 LINE L1 2913 3113 -3033 * 503 196 250 16 chr3 55216131 55216315 -172308263 + L1MDa LINE L1 275 501 -6039 1249 183 141 57 chr3 55216318 55216694 -172307884 + L1MDa LINE L1 840 1183 -5357 810 175 0 0 chr3 55216694 55216820 -172307758 + FLAM_C SINE Alu 2 127 -6 210 37 0 0 chr3 55216820 55216847 -172307731 + (CA)n Simple_repeat Simple_repeat 2 28 0 1249 183 141 57 chr3 55216847 55216929 -172307649 + L1MDa LINE L1 1182 1338 -5202 247 280 67 0 chr3 55217269 55217344 -172307234 + L2 LINE L2 3193 3272 0 1813 123 60 11 chr3 55217710 55218001 -172306577 + AluSx SINE Alu 1 304 0 2137 119 6 25 chr3 55218566 55218884 -172305694 + AluSx SINE Alu 1 312 0 265 24 48 0 chr3 55219213 55219255 -172305323 + (TA)n Simple_repeat Simple_repeat 1 44 0 237 23 47 23 chr3 55219316 55219359 -172305219 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 2428 94 0 16 chr3 55219366 55219684 -172304894 + AluSq SINE Alu 1 313 0 214 338 124 14 chr3 55219806 55219951 -172304627 - MIR3 SINE MIR -14 194 34 291 331 90 0 chr3 55221191 55221336 -172303242 - MIR SINE MIR -26 236 79 1706 173 28 0 chr3 55222059 55222342 -172302236 - AluJo SINE Alu -21 291 1 26 0 0 0 chr3 55222768 55222794 -172301784 + AT_rich Low_complexity Low_complexity 1 26 0 568 180 180 0 chr3 55222794 55222894 -172301684 - FLAM_C SINE Alu -15 118 1 397 131 16 0 chr3 55223004 55223065 -172301513 + U7 snRNA snRNA 2 63 0 219 69 0 0 chr3 55223065 55223094 -172301484 + (A)n Simple_repeat Simple_repeat 1 29 0 285 254 82 22 chr3 55223946 55224080 -172300498 + L1ME2 LINE L1 5799 5940 -230 394 250 269 10 chr3 55224483 55224691 -172299887 - MIR SINE MIR 0 262 1 469 251 151 6 chr3 55225316 55225495 -172299083 - MIR SINE MIR -34 228 24 1481 168 66 18 chr3 55226087 55226373 -172298205 + AluJb SINE Alu 1 300 -12 1658 110 39 43 chr3 55226744 55227055 -172297523 + AluSg SINE Alu 1 310 0 1479 183 3 39 chr3 55227804 55228116 -172296462 + AluJb SINE Alu 1 301 -11 603 153 0 0 chr3 55228117 55228202 -172296376 + AluS SINE Alu 2 86 -226 407 287 17 9 chr3 55228202 55228317 -172296261 + FLAM_A SINE Alu 17 132 -10 2288 70 7 3 chr3 55228964 55229262 -172295316 + AluSp SINE Alu 3 301 -12 201 208 26 26 chr3 55230647 55230724 -172293854 + (CCG)n Simple_repeat Simple_repeat 2 78 0 397 266 97 8 chr3 55231866 55231990 -172292588 - MIR SINE MIR 0 262 128 759 139 0 58 chr3 55232076 55232213 -172292365 + FLAM_C SINE Alu 2 130 -3 2318 44 10 0 chr3 55232503 55232798 -172291780 + AluY SINE Alu 1 298 -13 549 251 128 14 chr3 55233976 55234187 -172290391 + L1ME3A LINE L1 5676 5910 -260 912 80 0 0 chr3 55234194 55234307 -172290271 + AluSx SINE Alu 13 125 -188 305 276 0 13 chr3 55234310 55234386 -172290192 - L1MC4 LINE L1 -1351 6691 6617 * 377 265 8 55 chr3 55234354 55234481 -172290097 + L1MC4 LINE L1 6543 6702 -1140 327 194 45 0 chr3 55234429 55234496 -172290082 - L1MCa LINE L1 -4362 2064 1995 * 244 150 50 0 chr3 55234501 55234561 -172290017 + (CATATA)n Simple_repeat Simple_repeat 2 64 0 1199 112 0 0 chr3 55234562 55234731 -172289847 + AluSx SINE Alu 127 295 -17 778 211 14 53 chr3 55234734 55234818 -172289760 + L1ME3A LINE L1 5966 6052 -118 1523 173 0 73 chr3 55234818 55235014 -172289564 - AluJo SINE Alu -6 306 142 2121 110 0 3 chr3 55235014 55235304 -172289274 + AluSg SINE Alu 1 289 -21 1523 173 0 73 chr3 55235304 55235437 -172289141 - AluJo SINE Alu -170 142 1 778 211 14 53 chr3 55235437 55235560 -172289018 + L1ME3A LINE L1 6052 6165 -5 240 232 101 0 chr3 55235574 55235643 -172288935 + L2 LINE L2 1705 1780 -1534 1936 78 61 37 chr3 55235643 55235741 -172288837 + AluSg SINE Alu 1 95 -215 2147 114 0 3 chr3 55235741 55236049 -172288529 + AluSg SINE Alu 1 307 -3 1936 78 61 37 chr3 55236049 55236245 -172288333 + AluSg SINE Alu 95 302 -8 399 174 0 0 chr3 55236245 55236314 -172288264 + PABL_A-int LTR ERV1 3248 3316 -1699 2173 98 0 0 chr3 55236315 55236625 -172287953 + AluSp SINE Alu 1 310 0 735 226 0 0 chr3 55236634 55236789 -172287789 + FRAM SINE Alu 1 146 -30 395 246 80 7 chr3 55236985 55237123 -172287455 + LTR16C LTR ERVL 156 303 -188 308 146 0 0 chr3 55237269 55237310 -172287268 - Alu SINE Alu -261 41 1 1422 154 33 129 chr3 55237312 55237489 -172287089 - MER58B DNA MER1_type -2088 332 140 1587 153 68 4 chr3 55237489 55237612 -172286966 + AluSx SINE Alu 1 115 -197 198 0 0 0 chr3 55237612 55237634 -172286944 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 1587 153 68 4 chr3 55237634 55237791 -172286787 + AluSx SINE Alu 115 299 -13 1422 154 33 129 chr3 55237791 55237873 -172286705 - MER58B DNA MER1_type -2280 140 115 815 130 17 0 chr3 55237873 55237988 -172286590 + FLAM_C SINE Alu 1 117 -16 1422 154 33 129 chr3 55237988 55238091 -172286487 - MER58B DNA MER1_type -2305 115 4 1889 108 72 0 chr3 55238236 55238514 -172286064 + AluSq SINE Alu 1 298 -15 34 0 0 0 chr3 55239128 55239162 -172285416 + AT_rich Low_complexity Low_complexity 1 34 0 1922 100 48 7 chr3 55239517 55239807 -172284771 - AluSq SINE Alu -11 302 1 1468 168 18 28 chr3 55239827 55240112 -172284466 - AluJb SINE Alu -24 288 7 2269 82 3 0 chr3 55240372 55240666 -172283912 + AluSx SINE Alu 1 295 -17 1613 162 33 4 chr3 55240737 55241009 -172283569 + AluSx SINE Alu 1 280 -32 207 0 0 0 chr3 55241009 55241032 -172283546 + (CAAT)n Simple_repeat Simple_repeat 4 26 0 729 178 15 15 chr3 55241180 55241315 -172283263 - AluJb SINE Alu -176 136 2 2393 67 0 0 chr3 55241375 55241674 -172282904 - AluY SINE Alu -12 299 1 1789 139 10 10 chr3 55241692 55241980 -172282598 - AluSp SINE Alu -25 288 1 618 179 185 0 chr3 55242768 55242930 -172281648 - L1MC5 LINE L1 -45 7916 7725 292 310 45 30 chr3 55242937 55243106 -172281472 - MIR SINE MIR -58 150 18 2416 79 0 0 chr3 55243804 55244109 -172280469 - AluSq SINE Alu -8 305 1 279 143 111 0 chr3 55244217 55244280 -172280298 - L1ME2 LINE L1 0 6164 6095 1912 145 6 31 chr3 55244365 55244552 -172280026 - L1MA6 LINE L1 -4 6296 6121 2071 125 0 0 chr3 55244552 55244848 -172279730 + AluSx SINE Alu 1 296 -16 1912 145 6 31 chr3 55244848 55245011 -172279567 - L1MA6 LINE L1 -179 6121 5955 817 129 7 50 chr3 55245019 55245158 -172279420 - FLAM_C SINE Alu 0 133 1 2105 112 0 0 chr3 55245183 55245478 -172279100 - AluSx SINE Alu -17 295 1 369 229 28 9 chr3 55245479 55245588 -172278990 - L1M4 LINE L1 -892 5254 5144 969 82 7 7 chr3 55245622 55245757 -172278821 - AluSq/x SINE Alu -177 135 1 785 99 0 0 chr3 55245970 55246071 -172278507 + AluSc SINE Alu 148 248 -61 1260 162 14 0 chr3 55246071 55246281 -172278297 + AluSg/x SINE Alu 83 295 -15 896 239 116 60 chr3 55246315 55246467 -172278111 - L1M4 LINE L1 -1150 4996 4854 1856 140 20 7 chr3 55246467 55246760 -172277818 + AluJb SINE Alu 1 297 -15 896 239 116 60 chr3 55246760 55246889 -172277689 - L1M4 LINE L1 -1292 4854 4734 2099 114 3 0 chr3 55246889 55247196 -172277382 - AluY SINE Alu -3 308 1 896 239 116 60 chr3 55247196 55247323 -172277255 - L1M4 LINE L1 -1412 4734 4616 2155 77 27 3 chr3 55247323 55247621 -172276957 - AluY SINE Alu -6 305 1 896 239 116 60 chr3 55247621 55247711 -172276867 - L1M4 LINE L1 -1530 4616 4468 1821 164 7 0 chr3 55247737 55248036 -172276542 - AluSx SINE Alu -11 301 1 725 154 157 4 chr3 55248048 55248198 -172276380 - L1MC3 LINE L1 -141 7829 7703 2481 45 0 10 chr3 55248198 55248506 -172276072 - AluY SINE Alu -5 306 2 725 154 157 4 chr3 55248506 55248560 -172276018 - L1MC3 LINE L1 -267 7703 7506 1363 194 4 0 chr3 55248563 55248815 -172275763 + AluJo SINE Alu 50 302 -10 1040 156 6 12 chr3 55248815 55248982 -172275596 + AluJo/FRAM SINE Alu 137 302 0 3089 235 30 26 chr3 55248989 55249881 -172274697 - L1M4 LINE L1 -1301 4845 3950 2028 130 7 0 chr3 55249882 55250181 -172274397 - AluSx SINE Alu -11 301 1 1839 140 19 7 chr3 55250186 55250494 -172274084 - AluSx SINE Alu 0 312 1 830 121 0 0 chr3 55250494 55250610 -172273968 - AluJo/FLAM SINE Alu -195 117 2 450 191 61 0 chr3 55250613 55250728 -172273850 - L1M4 LINE L1 -2185 3961 3840 846 248 52 0 chr3 55251668 55251918 -172272660 - L1M4 LINE L1 -2292 3854 3592 2305 89 0 0 chr3 55251954 55252256 -172272322 - AluSx SINE Alu -1 311 10 2783 240 75 25 chr3 55252257 55253246 -172271332 - L1M4 LINE L1 -979 5167 4130 687 279 132 0 chr3 55253353 55253550 -172271028 - MIR SINE MIR -21 241 19 1659 124 0 30 chr3 55254377 55254643 -172269935 + AluSx SINE Alu 44 301 -11 1596 150 0 12 chr3 55254853 55255107 -172269471 - AluJo SINE Alu -23 289 39 2031 125 0 0 chr3 55255119 55255414 -172269164 - AluSx SINE Alu -17 295 1 1343 235 21 110 chr3 55255665 55256185 -172268393 - L2 LINE L2 -1 3312 2839 324 262 69 72 chr3 55256741 55256890 -172267688 - L1MC4 LINE L1 -85 7957 7809 2217 105 0 3 chr3 55256890 55257196 -172267382 - AluSq SINE Alu -8 305 1 324 262 69 72 chr3 55257196 55257422 -172267156 - L1MC4 LINE L1 -233 7809 7473 907 211 138 112 chr3 55257436 55257809 -172266769 + MER20B DNA MER1_type 229 591 -192 2122 108 3 0 chr3 55257809 55258114 -172266464 - AluSq SINE Alu -7 306 1 907 211 138 112 chr3 55258114 55258165 -172266413 + MER20B DNA MER1_type 591 639 -144 1793 125 3 60 chr3 55258165 55258484 -172266094 + AluSg SINE Alu 1 301 -9 907 211 138 112 chr3 55258484 55258594 -172265984 + MER20B DNA MER1_type 639 778 -5 273 270 180 18 chr3 55258776 55258887 -172265691 - L2 LINE L2 -422 2892 2764 2036 122 0 0 chr3 55258957 55259251 -172265327 + AluSg SINE Alu 1 294 -16 2117 109 13 0 chr3 55259251 55259554 -172265024 + AluSx SINE Alu 1 307 -5 1693 161 13 3 chr3 55260238 55260536 -172264042 + AluJb SINE Alu 2 302 -10 2263 65 10 0 chr3 55260592 55260883 -172263695 + AluY SINE Alu 1 294 -17 2179 124 0 0 chr3 55261806 55262113 -172262465 - AluSx SINE Alu -5 307 1 2088 113 0 7 chr3 55262114 55262423 -172262155 - AluSq SINE Alu 0 313 7 21 57 0 0 chr3 55262687 55262722 -172261856 + AT_rich Low_complexity Low_complexity 1 35 0 252 319 204 16 chr3 55262739 55262930 -172261648 - MIR SINE MIR -23 239 13 760 97 32 32 chr3 55263386 55263510 -172261068 + AluJb SINE Alu 2 125 -187 2302 78 0 0 chr3 55264242 55264536 -172260042 - AluSc SINE Alu -15 294 1 264 117 0 92 chr3 55264536 55264601 -172259977 + L1MD3 LINE L1 7936 8042 0 5900 142 179 93 chr3 55267750 55269313 -172255265 - pTR5 LTR ERV1 0 2438 743 1377 204 139 51 chr3 55269613 55270103 -172254475 + LTR10B LTR ERV1 1 533 -14 4146 197 39 86 chr3 55270158 55271332 -172253246 + HERVI LTR ERV1 26 1144 -6641 2303 69 0 7 chr3 55271784 55272089 -172252489 - AluY SINE Alu -8 303 1 1591 218 40 22 chr3 55272142 55272697 -172251881 + HERVI LTR ERV1 1219 4623 -3162 493 243 47 34 chr3 55272761 55272909 -172251669 + HERVI LTR ERV1 4778 4927 -2858 330 215 0 89 chr3 55272892 55272971 -172251607 + HERVI LTR ERV1 5346 5417 -2368 * 1858 208 136 18 chr3 55272985 55273433 -172251145 + Harlequin LTR ERV1 2659 3159 -3737 6530 220 18 13 chr3 55273798 55275151 -172249427 + Harlequin LTR ERV1 6141 6649 0 1262 212 160 61 chr3 55275151 55275646 -172248932 + LTR10B LTR ERV1 1 544 -3 1394 88 0 0 chr3 55327319 55327489 -172197089 - AluSp SINE Alu -10 303 134 2183 111 0 25 chr3 55327489 55327804 -172196774 - AluSx SINE Alu -2 310 4 856 171 7 14 chr3 55327875 55328021 -172196557 + AluJb SINE Alu 147 291 -21 2419 82 3 3 chr3 55328098 55328401 -172196177 - AluSp SINE Alu -7 306 4 1928 78 8 0 chr3 55328522 55328765 -172195813 + AluY SINE Alu 56 300 -11 1139 58 0 22 chr3 55328768 55328905 -172195673 + AluY SINE Alu 1 134 -177 1819 143 7 17 chr3 55328905 55329206 -172195372 + AluSx SINE Alu 1 298 -14 289 302 11 0 chr3 55329249 55329357 -172195221 + L1MEc LINE L1 1512 1666 -910 1412 217 18 12 chr3 55329371 55329708 -172194870 + L1M4 LINE L1 3850 4188 -1958 1856 148 23 10 chr3 55329708 55330012 -172194566 + AluSx SINE Alu 1 308 -4 1257 100 6 0 chr3 55330107 55330277 -172194301 + AluSp SINE Alu 4 174 -139 664 133 0 10 chr3 55330377 55330475 -172194103 - AluSg/x SINE Alu -129 181 85 1255 162 45 54 chr3 55330475 55330697 -172193881 - AluJo SINE Alu -91 221 2 407 130 65 22 chr3 55330711 55330803 -172193775 + MLT-int LTR MaLR 675 770 -965 2215 127 3 13 chr3 55330827 55331141 -172193437 - AluSp SINE Alu -2 311 1 483 309 0 0 chr3 55331180 55331306 -172193272 + MLT-int LTR MaLR 1294 1419 -316 3227 123 58 41 chr3 55331306 55331889 -172192689 + MER4E LTR ERV1 1 593 -186 2603 47 0 0 chr3 55331889 55332186 -172192392 - AluY SINE Alu -14 297 1 24 0 0 0 chr3 55332297 55332321 -172192257 + AT_rich Low_complexity Low_complexity 1 24 0 308 46 138 7 chr3 55332321 55332473 -172192105 + (TA)n Simple_repeat Simple_repeat 1 172 0 441 23 86 52 chr3 55332503 55332677 -172191901 + (TA)n Simple_repeat Simple_repeat 1 180 0 304 352 88 26 chr3 55332684 55332911 -172191667 - L1MEd LINE L1 -5291 828 588 447 97 78 0 chr3 55333302 55333456 -172191122 + (TA)n Simple_repeat Simple_repeat 1 166 0 2362 68 3 20 chr3 55333456 55333750 -172190828 - AluSp SINE Alu -24 289 1 1664 163 64 7 chr3 55333759 55334054 -172190524 - AluJb SINE Alu 0 312 1 2331 95 0 3 chr3 55334059 55334354 -172190224 - AluSq SINE Alu -19 294 1 2293 101 17 0 chr3 55334354 55334650 -172189928 - AluSx SINE Alu -11 301 1 466 255 66 10 chr3 55334750 55334946 -172189632 - L1MC5 LINE L1 -32 7929 7723 1032 148 0 7 chr3 55334948 55335097 -172189481 + AluJo SINE Alu 1 148 -164 708 37 7 44 chr3 55335101 55335236 -172189342 + SVA Other Other 665 794 -592 622 170 10 0 chr3 55335342 55335442 -172189136 + AluSg/x SINE Alu 191 291 -19 1457 175 13 78 chr3 55335474 55335617 -172188961 + AluJo SINE Alu 3 117 -195 1691 153 6 67 chr3 55335617 55335930 -172188648 + AluJb SINE Alu 10 303 -9 1457 175 13 78 chr3 55335930 55336095 -172188483 + AluJo SINE Alu 117 291 -21 763 194 8 0 chr3 55336232 55336366 -172188212 + AluJb SINE Alu 1 135 -177 1121 216 176 16 chr3 55336736 55337166 -172187412 - MLT1F LTR MaLR -3 539 50 1313 44 0 0 chr3 55337185 55337344 -172187234 - L1PA4 LINE L1 0 6155 5997 1256 101 0 0 chr3 55337390 55337548 -172187030 - AluSx SINE Alu -13 297 140 208 214 0 0 chr3 55338123 55338165 -172186413 + G-rich Low_complexity Low_complexity 3 44 0 183 226 0 81 chr3 55338462 55338524 -172186054 - MIR3 SINE MIR -139 69 13 2059 71 7 97 chr3 55338678 55339011 -172185567 - AluSx SINE Alu 0 305 1 1041 105 0 0 chr3 55339017 55339150 -172185428 - AluSx SINE Alu -179 133 1 1170 156 49 129 chr3 55339620 55339946 -172184632 + AluJo SINE Alu 1 300 -2 2460 71 7 0 chr3 55340119 55340416 -172184162 - AluSg SINE Alu -11 299 1 327 307 13 0 chr3 55340517 55340592 -172183986 + MIR SINE MIR 3 78 -184 2198 130 0 3 chr3 55340624 55340931 -172183647 + AluSx SINE Alu 1 306 -6 1778 155 49 0 chr3 55340932 55341216 -172183362 + AluSx SINE Alu 2 299 -13 207 100 0 0 chr3 55341359 55341389 -172183189 + (TC)n Simple_repeat Simple_repeat 1 30 0 2227 115 16 0 chr3 55341419 55341723 -172182855 - AluSx SINE Alu -2 310 2 2197 117 10 0 chr3 55342112 55342410 -172182168 - AluSx SINE Alu -11 301 1 2011 146 7 0 chr3 55342539 55342827 -172181751 - AluSx SINE Alu -22 290 1 432 244 119 11 chr3 55342997 55343173 -172181405 - L1MDa LINE L1 -2257 4283 4089 889 136 0 0 chr3 55343173 55343305 -172181273 - AluSp/q SINE Alu 0 313 182 3128 245 76 29 chr3 55343306 55343787 -172180791 - L1MDa LINE L1 -2569 3971 3514 1343 208 12 59 chr3 55343787 55344109 -172180469 - AluJb SINE Alu -4 308 2 3128 245 76 29 chr3 55344109 55344976 -172179602 - L1MDa LINE L1 -3026 3514 2559 1830 149 43 48 chr3 55344981 55345357 -172179221 - L1MA7 LINE L1 -7 6284 5911 509 195 0 0 chr3 55345357 55345439 -172179139 + AluJ/FLAM SINE Alu 4 85 -227 5982 175 19 101 chr3 55345448 55345619 -172178959 - L1P LINE L1 -816 5330 5147 2201 136 10 0 chr3 55345619 55345921 -172178657 - AluSx SINE Alu -7 305 1 5982 175 19 101 chr3 55345921 55346652 -172177926 - L1P LINE L1 -999 5147 4358 2324 124 3 0 chr3 55346652 55346959 -172177619 - AluSx SINE Alu -4 308 1 5982 175 19 101 chr3 55346959 55347237 -172177341 - L1P LINE L1 -1788 4358 4059 1656 179 4 11 chr3 55347237 55347516 -172177062 + AluJo SINE Alu 5 281 -31 5982 175 19 101 chr3 55347516 55347552 -172177026 - L1P LINE L1 -2087 4059 4022 333 0 0 0 chr3 55347552 55347589 -172176989 + (CA)n Simple_repeat Simple_repeat 2 38 0 5982 175 19 101 chr3 55347589 55348194 -172176384 - L1P LINE L1 -2124 4022 3680 821 159 0 57 chr3 55348191 55348367 -172176211 - L1 LINE L1 -1223 4923 4758 * 2478 86 3 0 chr3 55348406 55348708 -172175870 + AluY SINE Alu 1 303 -8 529 157 0 58 chr3 55348715 55348836 -172175742 - L1 LINE L1 -1369 4777 4664 1020 195 99 4 chr3 55348918 55349190 -172175388 - L1MDa LINE L1 -4675 1865 1568 2211 124 0 7 chr3 55349219 55349518 -172175060 - AluSx SINE Alu -15 297 1 2025 113 11 4 chr3 55350468 55350743 -172173835 - AluSx SINE Alu -35 277 1 1174 136 0 0 chr3 55351194 55351356 -172173222 + FRAM SINE Alu 1 159 -17 201 337 81 0 chr3 55352190 55352276 -172172302 + L2 LINE L2 2972 3064 -208 28 61 0 0 chr3 55353053 55353102 -172171476 + GC_rich Low_complexity Low_complexity 1 49 0 314 102 41 194 chr3 55353730 55353828 -172170750 - L2 LINE L2 -48 3265 3183 223 217 22 0 chr3 55353880 55353926 -172170652 + L2 LINE L2 2303 2349 -965 622 343 40 83 chr3 55354054 55354328 -172170250 + L2 LINE L2 2466 2750 -522 2128 103 6 59 chr3 55354328 55354648 -172169930 - AluSx SINE Alu -9 303 1 622 343 40 83 chr3 55354648 55355178 -172169400 + L2 LINE L2 2750 3272 0 2494 91 0 0 chr3 55355299 55355606 -172168972 + AluSx SINE Alu 1 307 -5 822 148 0 0 chr3 55355699 55355816 -172168762 + AluJo SINE Alu 29 146 -162 1820 144 6 39 chr3 55355816 55356128 -172168450 + AluJb SINE Alu 3 304 -8 418 129 86 0 chr3 55356758 55356828 -172167750 - AluS SINE Alu -9 302 227 1861 169 3 23 chr3 55357095 55357402 -172167176 - AluJb SINE Alu -11 301 1 414 346 111 4 chr3 55357600 55357834 -172166744 + MIR SINE MIR 4 262 0 208 360 140 9 chr3 55357999 55358113 -172166465 - MIR SINE MIR -34 228 100 969 122 0 27 chr3 55358132 55358279 -172166299 - FLAM_C SINE Alu 0 143 1 1131 87 0 0 chr3 55359080 55359218 -172165360 - AluSg/x SINE Alu -11 301 164 1530 85 5 0 chr3 55359319 55359507 -172165071 - AluSc SINE Alu -120 189 1 771 309 49 4 chr3 55359751 55359994 -172164584 + MIR SINE MIR 2 255 -7 195 381 103 19 chr3 55362237 55362392 -172162186 - L3 LINE CR1 -2 1575 1408 2269 122 0 3 chr3 55362581 55362893 -172161685 - AluSq SINE Alu -2 311 1 856 123 0 8 chr3 55362933 55363055 -172161523 + FLAM_C SINE Alu 1 121 -22 515 141 0 0 chr3 55363082 55363153 -172161425 + AluJ/FRAM SINE Alu 218 288 -24 2422 75 0 0 chr3 55363309 55363601 -172160977 + AluY SINE Alu 1 292 -19 180 224 24 176 chr3 55364430 55364555 -172160023 - MIR3 SINE MIR -101 107 2 180 0 0 0 chr3 55367173 55367193 -172157385 + (CCTG)n Simple_repeat Simple_repeat 4 23 0 367 328 43 21 chr3 55371037 55371223 -172153355 - L2 LINE L2 -10 3262 3073 2346 96 3 0 chr3 55371536 55371838 -172152740 + AluSq SINE Alu 5 307 -6 772 140 112 7 chr3 55372019 55372162 -172152416 - AluJo SINE Alu -129 183 26 2268 73 66 3 chr3 55372174 55372460 -172152118 + AluSg SINE Alu 1 304 -6 1441 133 140 22 chr3 55372519 55372790 -172151788 + AluSg1 SINE Alu 5 307 -2 1906 129 63 0 chr3 55372799 55373086 -172151492 + AluSx SINE Alu 1 305 -7 2216 100 3 29 chr3 55373088 55373399 -172151179 + AluSx SINE Alu 1 303 -9 323 99 17 40 chr3 55374661 55374905 -172149673 + AluJb SINE Alu 1 301 0 1485 145 5 0 chr3 55374967 55375188 -172149390 - AluJo SINE Alu -9 303 82 29 0 0 25 chr3 55375194 55375205 -172149373 + AT_rich Low_complexity Low_complexity 1 11 -28 2241 95 0 13 chr3 55375205 55375520 -172149058 - AluSx SINE Alu -1 311 1 29 0 0 25 chr3 55375520 55375548 -172149030 + AT_rich Low_complexity Low_complexity 11 39 0 279 271 65 70 chr3 55375590 55375789 -172148789 + L2 LINE L2 2853 3050 -222 195 264 226 0 chr3 55375940 55375961 -172148617 + L2 LINE L2 3188 3252 -20 220 125 0 0 chr3 55375961 55375993 -172148585 + MIR SINE MIR 217 248 -14 2322 77 10 0 chr3 55376945 55377245 -172147333 + AluSq SINE Alu 1 303 -10 1706 93 0 4 chr3 55378054 55378279 -172146299 - AluSq SINE Alu -89 224 1 794 201 0 0 chr3 55378312 55378451 -172146127 - FAM SINE Alu -46 139 1 209 195 24 0 chr3 55379637 55379678 -172144900 + (CCA)n Simple_repeat Simple_repeat 1 42 0 542 269 7 0 chr3 55380309 55380454 -172144124 + L1M4 LINE L1 2681 2826 -3320 2256 92 0 0 chr3 55380479 55380774 -172143804 - AluSg SINE Alu -15 295 1 2428 61 0 0 chr3 55380789 55381086 -172143492 - AluY SINE Alu -14 297 1 207 0 0 0 chr3 55381114 55381137 -172143441 + (CAA)n Simple_repeat Simple_repeat 2 24 0 255 25 0 75 chr3 55381237 55381277 -172143301 + U1 snRNA snRNA 1 37 -128 677 295 65 95 chr3 55381277 55381402 -172143176 + L1M4 LINE L1 2903 3030 -3116 1666 137 0 4 chr3 55381402 55381657 -172142921 + AluSg SINE Alu 41 294 -16 677 295 65 95 chr3 55381657 55381696 -172142882 + L1M4 LINE L1 3030 3069 -3077 1977 142 0 0 chr3 55381696 55382021 -172142557 + AluSq SINE Alu 1 325 0 677 295 65 95 chr3 55382021 55382042 -172142536 + L1M4 LINE L1 3069 3089 -3057 2149 92 0 3 chr3 55382042 55382368 -172142210 + AluSg1 SINE Alu 1 325 0 677 295 65 95 chr3 55382368 55382403 -172142175 + L1M4 LINE L1 3089 3124 -3022 1853 112 25 0 chr3 55382403 55382679 -172141899 + AluSq SINE Alu 1 283 -30 2372 65 0 40 chr3 55382679 55383003 -172141575 + AluY SINE Alu 1 311 0 677 295 65 95 chr3 55383003 55383144 -172141434 + L1M4 LINE L1 3122 3260 -2886 978 136 0 0 chr3 55383152 55383292 -172141286 + FRAM SINE Alu 1 140 -36 1748 167 0 55 chr3 55383487 55383615 -172140963 + AluJo SINE Alu 1 134 -178 2369 84 3 0 chr3 55383615 55383923 -172140655 - AluY SINE Alu -2 309 1 1748 167 0 55 chr3 55383923 55384124 -172140454 + AluJo SINE Alu 134 312 0 990 182 0 0 chr3 55384617 55384782 -172139796 + FRAM SINE Alu 8 172 -4 302 195 0 24 chr3 55385465 55385547 -172139031 - LTR33 LTR ERVL 0 521 442 1190 188 49 39 chr3 55385678 55385986 -172138592 + LTR55 LTR ERV 231 541 -7 2162 124 0 0 chr3 55386035 55386341 -172138237 + AluSq SINE Alu 1 306 -7 2405 51 20 0 chr3 55386572 55386866 -172137712 - AluSp SINE Alu -13 300 1 1021 161 0 0 chr3 55386923 55387078 -172137500 - AluJb SINE Alu -14 298 144 1917 155 0 7 chr3 55387092 55387389 -172137189 - AluJb SINE Alu -17 295 1 326 244 101 12 chr3 55387457 55387625 -172136953 + L1M4 LINE L1 2345 2527 -3619 292 235 157 0 chr3 55387840 55387942 -172136636 + MIR3 SINE MIR 15 132 -76 230 311 142 0 chr3 55388425 55388531 -172136047 - MIR SINE MIR -61 147 27 256 91 0 36 chr3 55388590 55388645 -172135933 + (CA)n Simple_repeat Simple_repeat 2 54 0 476 238 118 25 chr3 55389136 55389517 -172135061 + LTR33 LTR ERVL 23 521 0 241 167 0 21 chr3 55389636 55389684 -172134894 - MIR SINE MIR -129 79 33 257 242 42 21 chr3 55390040 55390107 -172134471 + LTR33A LTR ERVL 425 496 -27 2054 146 0 0 chr3 55390107 55390428 -172134150 - AluSx SINE Alu 0 312 1 257 242 42 21 chr3 55390428 55390455 -172134123 + LTR33A LTR ERVL 496 521 -2 1076 191 23 23 chr3 55390562 55390777 -172133801 - AluJo SINE Alu -11 301 87 2317 73 7 3 chr3 55391159 55391459 -172133119 - AluSq SINE Alu -12 301 1 332 333 83 14 chr3 55396031 55396175 -172128403 + MIR SINE MIR 107 260 -2 466 246 18 9 chr3 55396939 55397049 -172127529 - MER81 DNA DNA -2 112 2 201 322 83 8 chr3 55397208 55397329 -172127249 - MIR SINE MIR -116 146 17 182 239 254 0 chr3 55397354 55397425 -172127153 + MIR SINE MIR 46 134 -74 1950 130 0 23 chr3 55397798 55398098 -172126480 - AluJb SINE Alu -14 298 6 208 317 42 33 chr3 55398566 55398686 -172125892 + L2 LINE L2 2442 2562 -752 204 391 17 0 chr3 55398712 55398827 -172125751 + L2 LINE L2 2656 2772 -542 354 307 6 22 chr3 55403051 55403173 -172121405 + (CAGCC)n Simple_repeat Simple_repeat 5 125 -55 1012 234 42 0 chr3 55403173 55403387 -172121191 + MER58A DNA MER1_type 2 224 0 354 307 6 22 chr3 55403387 55403443 -172121135 + (CAGCC)n Simple_repeat Simple_repeat 125 180 0 215 345 134 0 chr3 55406844 55406963 -172117615 + MER5A DNA MER1_type 55 189 0 214 366 99 0 chr3 55411214 55411315 -172113263 - MIR SINE MIR -71 137 27 297 0 0 0 chr3 55415460 55415493 -172109085 + (CA)n Simple_repeat Simple_repeat 2 34 0 269 289 11 22 chr3 55415519 55415699 -172108879 + (CA)n Simple_repeat Simple_repeat 2 179 0 299 310 86 0 chr3 55417666 55417782 -172106796 + L2 LINE L2 3142 3267 -5 22 0 0 0 chr3 55419157 55419179 -172105399 + GC_rich Low_complexity Low_complexity 1 22 0 189 255 43 0 chr3 55422907 55422954 -172101624 + L2 LINE L2 3264 3312 -1 180 239 22 0 chr3 55423680 55423726 -172100852 + MER5A DNA MER1_type 1 47 -142 271 280 51 70 chr3 55426417 55426631 -172097947 + L2 LINE L2 2554 2763 -551 187 310 53 29 chr3 55426664 55426835 -172097743 + L2 LINE L2 2886 3060 -253 722 281 62 16 chr3 55427273 55427579 -172096999 + L2 LINE L2 1288 1607 -1707 351 289 31 0 chr3 55427590 55427718 -172096860 + L2 LINE L2 1729 1860 -1454 1630 261 109 33 chr3 55427720 55427880 -172096698 + L2 LINE L2 2048 2194 -1119 548 148 56 0 chr3 55427880 55427988 -172096590 + L1MB7 LINE L1 6071 6184 0 1630 261 109 33 chr3 55427988 55428898 -172095680 + L2 LINE L2 2194 3204 -109 2089 88 0 0 chr3 55429008 55429269 -172095309 + AluSg SINE Alu 1 261 -49 246 160 67 13 chr3 55429662 55429737 -172094841 + (TA)n Simple_repeat Simple_repeat 1 79 0 4194 102 73 35 chr3 55430486 55431135 -172093443 - Tigger3(Golem) DNA MER2_type -1 3028 2347 2344 98 3 3 chr3 55431135 55431442 -172093136 + AluSq SINE Alu 1 307 -6 4194 102 73 35 chr3 55431442 55431515 -172093063 - Tigger3(Golem) DNA MER2_type -682 2347 2278 570 191 38 0 chr3 55431503 55431608 -172092970 - Tigger3(Golem) DNA MER2_type -2918 111 3 * 1022 355 87 22 chr3 55432700 55433415 -172091163 - ERVL LTR ERVL -2156 2840 2045 2201 105 3 13 chr3 55433415 55433720 -172090858 + AluSx SINE Alu 1 302 -10 1022 355 87 22 chr3 55433720 55434185 -172090393 - ERVL LTR ERVL -2951 2045 1612 482 301 180 17 chr3 55434211 55434500 -172090078 - LTR16C LTR ERVL -59 432 97 2588 71 0 0 chr3 55435029 55435338 -172089240 - AluSx SINE Alu -3 309 1 1534 207 65 91 chr3 55436265 55436815 -172087763 - MLT1H LTR MaLR -2 547 12 3438 140 28 81 chr3 55437384 55437470 -172087108 - MER67C LTR ERV1 0 710 621 1845 157 0 17 chr3 55437470 55437764 -172086814 - AluSx SINE Alu -10 302 14 3438 140 28 81 chr3 55437764 55438283 -172086295 - MER67C LTR ERV1 -89 621 150 2065 148 7 0 chr3 55438283 55438581 -172085997 - AluJb SINE Alu -12 300 1 3438 140 28 81 chr3 55438581 55438724 -172085854 - MER67C LTR ERV1 -560 150 1 32 26 0 0 chr3 55438953 55438992 -172085586 + AT_rich Low_complexity Low_complexity 1 39 0 423 310 35 35 chr3 55439162 55439423 -172085155 - L2 LINE L2 -838 2476 2216 2150 111 31 0 chr3 55440099 55440388 -172084190 + AluSx SINE Alu 1 298 -14 393 264 38 0 chr3 55440495 55440601 -172083977 + L1M4 LINE L1 4793 4902 -1244 255 161 36 18 chr3 55440633 55440689 -172083889 + L1M4 LINE L1 4890 4946 -1200 2495 76 0 0 chr3 55441325 55441626 -172082952 - AluSg SINE Alu -9 301 1 313 200 17 0 chr3 55443246 55443306 -172081272 - L2 LINE L2 -7 3265 3205 189 289 26 0 chr3 55443469 55443545 -172081033 + L2 LINE L2 3234 3311 -2 1343 211 55 0 chr3 55443759 55444048 -172080530 + L1MDa LINE L1 34 338 -6202 4134 182 112 68 chr3 55444048 55445286 -172079292 - MER52C LTR ERV1 0 1278 2 1750 271 77 6 chr3 55445287 55445755 -172078823 + L1MDa LINE L1 335 835 -5705 * 5899 141 29 16 chr3 55445754 55447108 -172077470 + L1MA8 LINE L1 4914 6286 -5 1744 184 78 61 chr3 55447121 55447610 -172076968 + L1MDa LINE L1 893 1389 -5151 1546 127 4 25 chr3 55447612 55447857 -172076721 + THE1B LTR MaLR 73 312 -52 5177 204 75 39 chr3 55447867 55449571 -172075007 + L1MDa LINE L1 1389 3031 -3509 1865 152 3 39 chr3 55449571 55449880 -172074698 + AluJb SINE Alu 1 298 -14 5177 204 75 39 chr3 55449880 55450080 -172074498 + L1MDa LINE L1 3031 3222 -3318 2103 151 0 0 chr3 55450080 55450385 -172074193 + AluSx SINE Alu 1 305 -7 5177 204 75 39 chr3 55450385 55451042 -172073536 + L1MDa LINE L1 3222 3854 -2686 2820 125 12 9 chr3 55451042 55451467 -172073111 + MSTA LTR MaLR 1 426 -2 5177 204 75 39 chr3 55451467 55452399 -172072179 + L1MDa LINE L1 3854 5043 -1497 479 106 0 0 chr3 55452403 55452469 -172072109 + AluS SINE Alu 2 67 -246 366 298 43 0 chr3 55452469 55452610 -172071968 + L1MDa LINE L1 5200 5346 -1194 388 232 21 0 chr3 55452635 55452730 -172071848 + L1MB4 LINE L1 5385 5481 -690 748 180 49 16 chr3 55452731 55452914 -172071664 + L1MB4 LINE L1 5967 6155 -25 861 180 69 132 chr3 55453103 55453444 -172071134 + L1MD2 LINE L1 5860 6173 -69 2251 105 0 7 chr3 55453444 55453739 -172070839 - AluSg1 SINE Alu -14 295 3 861 180 69 132 chr3 55453739 55453798 -172070780 + L1MD2 LINE L1 6173 6234 -8 358 264 40 0 chr3 55454172 55454297 -172070281 + MIR SINE MIR 2 131 -131 695 135 191 0 chr3 55456043 55456169 -172068409 - AluSc SINE Alu -5 304 155 604 281 20 49 chr3 55456280 55456409 -172068169 + MIR SINE MIR 2 122 -140 2370 195 76 22 chr3 55456409 55456999 -172067579 - MER74B LTR ERVL 0 622 1 604 281 20 49 chr3 55456999 55457115 -172067463 + MIR SINE MIR 122 240 -22 2312 96 0 3 chr3 55457482 55457783 -172066795 - AluSg SINE Alu -10 300 1 1409 217 57 15 chr3 55458397 55458729 -172065849 - MLT1A1 LTR MaLR -19 346 1 234 227 0 0 chr3 55460011 55460055 -172064523 + G-rich Low_complexity Low_complexity 3 46 0 448 287 79 18 chr3 55460503 55460667 -172063911 + L2 LINE L2 2607 2780 -534 834 133 7 60 chr3 55460706 55460856 -172063722 + AluJo SINE Alu 1 142 -170 1226 149 74 28 chr3 55460907 55460999 -172063579 - AluJo SINE Alu -87 225 139 2094 151 0 0 chr3 55460999 55461297 -172063281 - AluSx SINE Alu -14 298 1 1226 149 74 28 chr3 55461297 55461419 -172063159 - AluJo SINE Alu -173 139 1 2040 138 24 0 chr3 55461434 55461730 -172062848 - AluSx SINE Alu -7 305 3 213 295 38 0 chr3 55461736 55461841 -172062737 - MIR SINE MIR -67 195 87 2393 80 0 3 chr3 55462342 55462644 -172061934 - AluY SINE Alu -10 301 1 2439 88 7 0 chr3 55462644 55462951 -172061627 - AluSx SINE Alu -3 309 1 373 296 23 45 chr3 55463187 55463319 -172061259 + MLT1F-int LTR MaLR 756 884 -487 446 302 83 83 chr3 55463430 55463817 -172060761 + MLT1F-int LTR MaLR 961 1347 -24 1385 201 29 21 chr3 55463847 55464315 -172060263 + MLT1F LTR MaLR 8 590 -5 218 250 66 0 chr3 55464679 55464755 -172059823 - MIR SINE MIR -142 120 40 2070 112 53 3 chr3 55465283 55465568 -172059010 - AluSg SINE Alu -11 299 1 2126 159 0 0 chr3 55466503 55466818 -172057760 + 7SLRNA srpRNA srpRNA 1 315 -5 2546 67 0 0 chr3 55467692 55467991 -172056587 - AluY SINE Alu -12 299 1 2259 90 3 0 chr3 55468794 55469083 -172055495 - AluSc SINE Alu -19 290 1 611 230 104 48 chr3 55469522 55469792 -172054786 + L1MC4a LINE L1 5576 5860 -1948 4874 211 77 22 chr3 55469957 55471484 -172053094 - L1MC/D LINE L1 -768 5378 3846 5790 146 40 18 chr3 55471523 55472008 -172052570 - L1MA7 LINE L1 -5 6286 5813 312 27 0 0 chr3 55472008 55472045 -172052533 + (TG)n Simple_repeat Simple_repeat 2 38 0 5790 146 40 18 chr3 55472045 55473239 -172051339 - L1MA7 LINE L1 -478 5813 4573 204 323 40 40 chr3 55677549 55677673 -171846905 - MIR SINE MIR -118 144 21 2411 64 0 3 chr3 55677799 55678096 -171846482 - AluY SINE Alu -15 296 1 2159 101 3 0 chr3 55678148 55678435 -171846143 + AluSx SINE Alu 11 298 -14 868 66 0 0 chr3 55681111 55681217 -171843361 + AluSq/x SINE Alu 1 106 -206 528 122 0 0 chr3 55681217 55681316 -171843262 + AluSg/x SINE Alu 207 305 0 2150 110 0 26 chr3 55681318 55681627 -171842951 + AluSx SINE Alu 1 301 -11 1235 213 16 57 chr3 55681627 55681694 -171842884 + MLT1C LTR MaLR 116 184 -283 2307 83 3 7 chr3 55681694 55681995 -171842583 + AluSg SINE Alu 1 300 -10 1235 213 16 57 chr3 55681995 55682293 -171842285 + MLT1C LTR MaLR 184 466 -1 344 82 0 0 chr3 55682803 55682852 -171841726 + AluSp/q SINE Alu 169 217 -86 950 159 0 79 chr3 55682854 55683043 -171841535 - AluSp SINE Alu -6 307 134 1069 165 0 12 chr3 55683060 55683230 -171841348 + AluJb SINE Alu 130 297 -15 4167 144 28 39 chr3 55683247 55683445 -171841133 + L1MB3 LINE L1 5415 5614 -569 2141 101 0 17 chr3 55683445 55683768 -171840810 + AluSx SINE Alu 1 312 0 4167 144 28 39 chr3 55683768 55683989 -171840589 + L1MB3 LINE L1 5614 5836 -347 1463 192 48 7 chr3 55683989 55684280 -171840298 + AluJo SINE Alu 1 303 -9 4167 144 28 39 chr3 55684280 55684455 -171840123 + L1MB3 LINE L1 5836 6003 -180 1030 196 0 22 chr3 55684455 55684634 -171839944 - FAM SINE Alu 0 175 1 4167 144 28 39 chr3 55684634 55684814 -171839764 + L1MB3 LINE L1 6003 6183 0 337 228 126 44 chr3 55684904 55684993 -171839585 + L1MEc LINE L1 26 106 -6290 2116 129 3 0 chr3 55684993 55685302 -171839276 + AluSq SINE Alu 1 310 -3 337 228 126 44 chr3 55685302 55685418 -171839160 + L1MEc LINE L1 106 248 -6148 840 273 47 38 chr3 55685423 55685892 -171838686 + L1MEc LINE L1 982 1454 -4942 1406 162 0 4 chr3 55685892 55686121 -171838457 + AluJo SINE Alu 85 312 0 239 198 31 62 chr3 55686124 55686220 -171838358 + L1MCa LINE L1 1477 1569 -4857 2192 105 3 0 chr3 55686234 55686528 -171838050 - AluSq SINE Alu -17 296 2 393 274 34 27 chr3 55686589 55686735 -171837843 + LTR33 LTR ERVL 66 212 -309 354 378 114 5 chr3 55688916 55688937 -171835641 - L1ME4a LINE L1 -153 5968 5951 2226 117 0 3 chr3 55688937 55689245 -171835333 - AluJb SINE Alu -5 307 1 354 378 114 5 chr3 55689245 55689416 -171835162 - L1ME4a LINE L1 -170 5951 5755 907 253 32 18 chr3 55689429 55689650 -171834928 + MER58A DNA MER1_type 1 224 0 564 349 131 8 chr3 55691539 55691906 -171832672 + HAL1 LINE L1 6 417 -2090 255 152 76 0 chr3 55691942 55692008 -171832570 - FRAM/FAM SINE Alu -97 69 1 1066 149 0 46 chr3 55692020 55692194 -171832384 - AluJo/FRAM SINE Alu 0 302 137 2309 77 0 7 chr3 55692197 55692495 -171832083 - AluSg SINE Alu -14 296 1 1410 157 122 4 chr3 55692507 55692631 -171831947 - AluJo SINE Alu -14 298 190 1668 87 0 9 chr3 55692631 55692849 -171831729 - AluY SINE Alu -95 216 1 1410 157 122 4 chr3 55692849 55692986 -171831592 - AluJo SINE Alu -122 190 6 1162 249 101 68 chr3 55693001 55693104 -171831474 + HAL1 LINE L1 822 920 -1587 1744 187 7 0 chr3 55693104 55693404 -171831174 + AluJo SINE Alu 1 302 -10 1162 249 101 68 chr3 55693404 55693485 -171831093 + HAL1 LINE L1 920 997 -1510 2236 74 40 0 chr3 55693485 55693782 -171830796 + AluY SINE Alu 1 309 -2 1162 249 101 68 chr3 55693782 55694522 -171830056 + HAL1 LINE L1 997 1953 -554 1231 115 16 0 chr3 55695428 55695610 -171828968 - AluSg/x SINE Alu -5 307 123 1463 145 5 0 chr3 55695860 55696081 -171828497 - AluJo SINE Alu -4 308 87 2031 130 0 10 chr3 55696145 55696444 -171828134 - AluSx SINE Alu -16 296 1 2093 123 3 3 chr3 55696551 55696852 -171827726 - AluSx SINE Alu -11 301 1 790 196 0 0 chr3 55697054 55697187 -171827391 - FLAM_C SINE Alu 0 133 1 222 37 0 0 chr3 55697428 55697455 -171827123 + (TG)n Simple_repeat Simple_repeat 2 28 0 238 356 7 15 chr3 55697696 55697831 -171826747 + (TG)n Simple_repeat Simple_repeat 1 134 0 3129 172 25 27 chr3 55697980 55698543 -171826035 + MER68 LTR ERV1 1 562 0 205 346 20 26 chr3 55698718 55698871 -171825707 + (TG)n Simple_repeat Simple_repeat 2 153 0 2014 128 7 3 chr3 55698904 55699194 -171825384 - AluSx SINE Alu -21 291 1 259 218 103 46 chr3 55699481 55699568 -171825010 + MIR SINE MIR 80 171 -91 764 159 0 36 chr3 55699779 55699917 -171824661 + AluSg/x SINE Alu 178 310 0 358 280 50 0 chr3 55699997 55700097 -171824481 + MIR SINE MIR 46 150 -58 205 343 0 0 chr3 55702122 55702192 -171822386 + L2 LINE L2 2982 3051 -262 2272 101 0 3 chr3 55702630 55702937 -171821641 - AluSx SINE Alu -6 306 1 2088 107 0 32 chr3 55702941 55703250 -171821328 - AluSx SINE Alu 0 312 14 220 217 326 0 chr3 55703498 55703590 -171820988 + MIR SINE MIR 24 145 -117 2241 95 7 0 chr3 55704610 55704906 -171819672 + AluSx SINE Alu 1 298 -14 1951 139 7 0 chr3 55706188 55706489 -171818089 + AluSq SINE Alu 1 303 -10 1576 141 7 54 chr3 55707043 55707340 -171817238 + AluJo SINE Alu 14 296 -16 224 222 0 2 chr3 55707654 55707700 -171816878 - MIR SINE MIR -88 120 76 2338 68 0 0 chr3 55708960 55709254 -171815324 - AluSq SINE Alu -19 294 1 255 345 43 0 chr3 55710769 55710885 -171813693 - MIR SINE MIR -62 146 26 450 0 0 0 chr3 55711316 55711366 -171813212 + (CA)n Simple_repeat Simple_repeat 1 50 0 701 210 7 7 chr3 55711366 55711504 -171813074 - FRAM SINE Alu -38 138 1 264 269 0 0 chr3 55711553 55711631 -171812947 + (CA)n Simple_repeat Simple_repeat 1 78 0 295 293 26 26 chr3 55713236 55713352 -171811226 - MIR SINE MIR -62 146 31 226 233 10 58 chr3 55714605 55714708 -171809870 + (CAGAGA)n Simple_repeat Simple_repeat 5 102 0 327 297 146 32 chr3 55714728 55714913 -171809665 + L1MEd LINE L1 973 1178 -4941 507 299 6 0 chr3 55717098 55717275 -171807303 + GA-rich Low_complexity Low_complexity 2 179 0 483 201 0 0 chr3 55725474 55725618 -171798960 + (CA)n Simple_repeat Simple_repeat 1 144 0 2232 89 14 0 chr3 55729304 55729596 -171794982 + AluSp SINE Alu 1 296 -17 198 118 0 0 chr3 55734594 55734628 -171789950 + (GA)n Simple_repeat Simple_repeat 2 35 0 234 344 0 33 chr3 55749006 55749128 -171775450 + L2 LINE L2 2688 2805 -509 2441 54 0 3 chr3 55753472 55753769 -171770809 - AluY SINE Alu -15 296 1 2110 129 3 0 chr3 55753938 55754241 -171770337 - AluSq SINE Alu -9 304 1 2158 109 16 3 chr3 55757885 55758188 -171766390 + AluSg SINE Alu 1 307 -3 2155 88 10 14 chr3 55758286 55758445 -171766133 - AluSc SINE Alu -16 293 134 2489 57 0 16 chr3 55758445 55758760 -171765818 - AluY SINE Alu -1 310 1 2155 88 10 14 chr3 55758760 55758894 -171765684 - AluSc SINE Alu -175 134 1 833 222 0 12 chr3 55758971 55759142 -171765436 - FRAM SINE Alu -7 169 1 672 243 46 63 chr3 55759144 55759245 -171765333 - L1PB4 LINE L1 -28 6128 6027 2031 116 10 0 chr3 55759245 55759539 -171765039 - AluSx SINE Alu -13 299 3 672 243 46 63 chr3 55759539 55759676 -171764902 - L1PB4 LINE L1 -129 6027 5894 290 288 22 43 chr3 55759696 55759880 -171764698 + MER104 DNA Tc2 1 180 0 183 292 69 0 chr3 55760245 55760317 -171764261 + MIR SINE MIR 95 171 -91 1404 82 82 0 chr3 55761458 55761664 -171762914 - AluSx SINE Alu 0 312 90 813 92 0 0 chr3 55761706 55761815 -171762763 + AluSq/x SINE Alu 1 109 -203 2444 59 16 0 chr3 55761846 55762151 -171762427 + AluSp SINE Alu 1 310 -3 1544 154 133 3 chr3 55762172 55762502 -171762076 - LTR64 LTR ERVK 0 558 186 713 147 0 0 chr3 55762507 55762609 -171761969 - AluSx SINE Alu -206 107 6 1029 132 6 18 chr3 55762674 55762841 -171761737 - AluJo SINE Alu -147 165 1 3219 146 92 26 chr3 55762841 55762968 -171761610 - MER49 LTR ERV1 -41 882 765 2318 85 3 3 chr3 55762968 55763274 -171761304 + AluSg SINE Alu 1 306 -4 3219 146 92 26 chr3 55763274 55763413 -171761165 - MER49 LTR ERV1 -158 765 637 2277 95 0 3 chr3 55763413 55763719 -171760859 + AluSc SINE Alu 1 305 -4 3219 146 92 26 chr3 55763719 55764103 -171760475 - MER49 LTR ERV1 -286 637 188 1136 157 91 0 chr3 55764103 55764300 -171760278 - AluSg/x SINE Alu -12 300 86 732 115 39 0 chr3 55764301 55764405 -171760173 - AluSc SINE Alu -61 248 141 1380 150 5 0 chr3 55764405 55764612 -171759966 - AluJb SINE Alu -102 210 3 2131 84 53 0 chr3 55764618 55764902 -171759676 - AluSc SINE Alu -10 299 1 2174 90 17 0 chr3 55764902 55765192 -171759386 - AluSp SINE Alu -18 295 1 370 51 0 34 chr3 55765198 55765257 -171759321 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 1525 165 11 25 chr3 55765257 55765536 -171759042 - AluJb SINE Alu 0 312 38 214 289 170 0 chr3 55765593 55765752 -171758826 - L2 LINE L2 -1236 2078 1893 829 163 7 22 chr3 55766041 55766176 -171758402 - AluJb SINE Alu -178 134 2 2127 96 7 13 chr3 55766176 55766478 -171758100 - AluSq SINE Alu -10 303 4 973 247 28 55 chr3 55766480 55766639 -171757939 - L1M4 LINE L1 -3569 3075 2913 1922 81 4 0 chr3 55766639 55766885 -171757693 + AluSp SINE Alu 50 296 -17 2141 101 0 17 chr3 55766885 55767020 -171757558 + AluY SINE Alu 1 137 -174 2768 3 0 13 chr3 55767020 55767334 -171757244 + AluYa5 SINE Alu 2 311 0 2141 101 0 17 chr3 55767334 55767495 -171757083 + AluY SINE Alu 137 292 -19 973 247 28 55 chr3 55767495 55767624 -171756954 - L1M4 LINE L1 -3730 2914 2783 1866 161 16 10 chr3 55767624 55767934 -171756644 - AluJb SINE Alu 0 312 1 973 247 28 55 chr3 55767934 55768101 -171756477 - L1M4 LINE L1 -3861 2783 2630 572 231 36 44 chr3 55768111 55768161 -171756417 - L1M4 LINE L1 -5211 1331 1282 2303 86 7 0 chr3 55768161 55768462 -171756116 - AluY SINE Alu -8 303 1 572 231 36 44 chr3 55768462 55768636 -171755942 - L1M4 LINE L1 -5260 1282 1109 720 170 36 0 chr3 55768637 55768749 -171755829 + FLAM_C SINE Alu 2 117 -16 345 294 20 0 chr3 55768756 55768858 -171755720 + MER69 DNA AcHobo 194 297 -2229 * 358 258 86 0 chr3 55768847 55768975 -171755603 - LTR16A LTR ERVL -5 445 307 620 252 128 30 chr3 55769073 55769086 -171755492 + MER69 DNA AcHobo 277 287 -939 4523 80 5 47 chr3 55769086 55769454 -171755124 - LTR10E LTR ERV1 0 633 304 2234 104 7 7 chr3 55769454 55769762 -171754816 - AluY SINE Alu -3 308 1 4523 80 5 47 chr3 55769762 55770054 -171754524 - LTR10E LTR ERV1 -329 304 1 620 252 128 30 chr3 55770054 55770306 -171754272 + MER69 DNA AcHobo 287 568 -658 * 1025 229 83 46 chr3 55770294 55770752 -171753826 + MER69 DNA AcHobo 2000 2474 -52 893 178 91 35 chr3 55770758 55770955 -171753623 + AluJb SINE Alu 1 208 -104 186 319 14 14 chr3 55771580 55771652 -171752926 + L2 LINE L2 2993 3064 -208 1763 144 6 58 chr3 55771720 55772032 -171752546 - AluJb SINE Alu -16 296 1 1879 178 0 3 chr3 55773438 55773741 -171750837 + AluJb SINE Alu 1 302 -10 1959 116 46 0 chr3 55774116 55774400 -171750178 + AluSp SINE Alu 1 297 -16 1980 139 0 29 chr3 55774400 55774710 -171749868 + AluY SINE Alu 1 301 -10 2080 114 4 0 chr3 55774718 55774998 -171749580 + AluSx SINE Alu 1 281 -31 1052 171 0 0 chr3 55775018 55775188 -171749390 + AluJb SINE Alu 132 301 -11 213 279 200 18 chr3 55775514 55775679 -171748899 + L2 LINE L2 3014 3208 -105 * 277 315 102 9 chr3 55775674 55775782 -171748796 - L2 LINE L2 -5 3308 3191 1165 157 0 35 chr3 55776027 55776225 -171748353 - AluSg/x SINE Alu -21 291 101 232 29 0 29 chr3 55776226 55776260 -171748318 - AluY SINE Alu -247 53 21 242 282 10 68 chr3 55776263 55776366 -171748212 - MIR SINE MIR -63 199 103 1736 132 35 0 chr3 55776505 55776763 -171747815 - AluSx SINE Alu -45 267 1 1088 164 6 0 chr3 55778897 55779062 -171745516 - FAM SINE Alu -7 168 3 208 291 0 39 chr3 55779732 55779835 -171744743 + G-rich Low_complexity Low_complexity 4 102 0 564 315 65 9 chr3 55789890 55790106 -171734472 - MIR SINE MIR -20 242 15 208 347 61 14 chr3 55790325 55790472 -171734106 + L2 LINE L2 1932 2085 -1229 246 116 0 0 chr3 55795758 55795801 -171728777 + (GA)n Simple_repeat Simple_repeat 2 44 0 225 227 0 30 chr3 55795875 55795941 -171728637 + (CAGAGA)n Simple_repeat Simple_repeat 6 69 0 452 298 0 22 chr3 55798575 55798753 -171725825 + G-rich Low_complexity Low_complexity 3 176 0 346 192 10 36 chr3 55798797 55799108 -171725470 + GA-rich Low_complexity Low_complexity 1 302 0 195 42 0 0 chr3 55809393 55809417 -171715161 + (CA)n Simple_repeat Simple_repeat 2 25 0 203 286 165 33 chr3 55809491 55809582 -171714996 + L2 LINE L2 3207 3309 -4 180 302 63 0 chr3 55811406 55811469 -171713109 + L2 LINE L2 1885 1951 -1363 272 281 29 23 chr3 55814031 55814202 -171710376 + C-rich Low_complexity Low_complexity 2 173 0 1690 163 57 0 chr3 55815884 55816166 -171708412 - AluJo SINE Alu -13 299 2 218 333 29 98 chr3 55816184 55816499 -171708079 - L2 LINE L2 -90 3182 2890 462 97 0 0 chr3 55816845 55816917 -171707661 - Alu SINE Alu -6 306 235 816 114 0 0 chr3 55816932 55817046 -171707532 - AluSq/x SINE Alu -199 114 1 570 279 180 4 chr3 55817288 55817403 -171707175 + L2 LINE L2 917 1010 -2304 2416 70 0 13 chr3 55817403 55817717 -171706861 - AluY SINE Alu -1 310 1 570 279 180 4 chr3 55817717 55817873 -171706705 + L2 LINE L2 1010 1236 -2078 803 242 61 97 chr3 55817873 55818113 -171706465 + L1ME LINE L1 4112 4359 -1787 1752 95 4 0 chr3 55818113 55818345 -171706233 + AluSq SINE Alu 3 235 -78 803 242 61 97 chr3 55818345 55818496 -171706082 + L1ME LINE L1 4359 4482 -1664 1805 156 9 34 chr3 55818496 55818639 -171705939 + AluSx SINE Alu 1 146 -166 2386 66 0 10 chr3 55818639 55818940 -171705638 + AluY SINE Alu 1 298 -13 1805 156 9 34 chr3 55818940 55819116 -171705462 + AluSx SINE Alu 146 312 0 803 242 61 97 chr3 55819116 55819248 -171705330 + L1ME LINE L1 4482 4617 -1529 2274 64 20 3 chr3 55819248 55819543 -171705035 + AluY SINE Alu 1 300 -11 1106 145 59 36 chr3 55819588 55819809 -171704769 + AluJo SINE Alu 86 311 -1 242 284 108 0 chr3 55819811 55819913 -171704665 + L1ME LINE L1 4758 4870 -1276 370 264 101 0 chr3 55819984 55820132 -171704446 + L1ME LINE L1 4889 5051 -1095 2291 101 0 3 chr3 55820160 55820468 -171704110 - AluSc SINE Alu -2 307 1 274 65 290 16 chr3 55820501 55820563 -171704015 - FAM SINE Alu -1 178 100 22 35 0 0 chr3 55820571 55820600 -171703978 + AT_rich Low_complexity Low_complexity 1 29 0 1761 156 3 7 chr3 55820601 55820890 -171703688 - AluJb SINE Alu -24 288 1 400 333 34 0 chr3 55820921 55821038 -171703540 + L1ME LINE L1 5084 5204 -942 1028 223 118 52 chr3 55821061 55821227 -171703351 + L1ME LINE L1 5254 5408 -754 1802 178 0 0 chr3 55821227 55821519 -171703059 + AluSx SINE Alu 1 292 -20 1028 223 118 52 chr3 55821519 55821836 -171702742 + L1ME LINE L1 5408 5769 -393 1477 113 15 0 chr3 55821837 55822040 -171702538 + AluSx SINE Alu 2 207 -105 1763 132 83 0 chr3 55822112 55822378 -171702200 - AluJo SINE Alu -14 298 11 2133 131 0 7 chr3 55823148 55823454 -171701124 + AluSx SINE Alu 1 304 -8 2408 102 0 10 chr3 55823459 55823764 -171700814 + AluSq SINE Alu 1 302 -11 594 210 0 0 chr3 55824180 55824299 -171700279 + FLAM_A SINE Alu 11 129 -13 1483 154 112 31 chr3 55824713 55824999 -171699579 + AluJb SINE Alu 1 309 -3 249 284 68 0 chr3 55826282 55826356 -171698222 + L2 LINE L2 3235 3313 0 537 325 107 35 chr3 55826456 55826914 -171697664 + L2 LINE L2 2136 2626 -688 22 0 0 0 chr3 55826920 55826942 -171697636 + AT_rich Low_complexity Low_complexity 1 22 0 1330 153 24 82 chr3 55827109 55827364 -171697214 + AluJb SINE Alu 61 300 -12 193 299 225 34 chr3 55827380 55827824 -171696754 - L2 LINE L2 -1636 1678 1150 2177 108 7 14 chr3 55827996 55828291 -171696287 + AluSx SINE Alu 1 293 -19 554 170 0 0 chr3 55828403 55828497 -171696081 - AluS SINE Alu -217 95 2 315 336 145 36 chr3 55828547 55828934 -171695644 - L2 LINE L2 -1 3312 2884 374 384 15 15 chr3 55828943 55829141 -171695437 + HAL1 LINE L1 1123 1320 -1187 1832 111 0 139 chr3 55829152 55829511 -171695067 + AluSc SINE Alu 1 309 0 330 259 17 17 chr3 55829577 55829693 -171694885 + HAL1b LINE L1 320 435 -913 250 216 40 14 chr3 55829866 55829940 -171694638 + MER116 DNA Mariner 1 76 -4 800 197 0 93 chr3 55830122 55830184 -171694394 - AluJo SINE Alu -136 176 110 2536 66 0 13 chr3 55830184 55830487 -171694091 + AluY SINE Alu 1 299 -12 800 197 0 93 chr3 55830487 55830617 -171693961 - AluJo SINE Alu -202 110 2 1744 188 0 13 chr3 55831519 55831817 -171692761 + AluJb SINE Alu 1 294 -18 1627 70 10 5 chr3 55831821 55832021 -171692557 + AluY SINE Alu 1 201 -110 461 294 234 40 chr3 55832130 55832882 -171691696 + L2 LINE L2 1776 2673 -641 305 248 19 45 chr3 55835616 55835773 -171688805 + L2 LINE L2 2831 2983 -289 1973 149 0 17 chr3 55836834 55837129 -171687449 - AluJo SINE Alu -22 290 1 2506 70 3 6 chr3 55837365 55837677 -171686901 - AluY SINE Alu 0 311 1 1421 203 28 14 chr3 55838152 55838438 -171686140 - AluJo SINE Alu -16 296 7 675 159 0 9 chr3 55838714 55838827 -171685751 + FLAM_C SINE Alu 13 124 -19 1313 170 0 25 chr3 55838959 55839194 -171685384 - AluJb SINE Alu 0 312 84 2304 100 0 10 chr3 55839498 55839798 -171684780 + AluSp SINE Alu 3 299 -14 26 88 0 0 chr3 55840161 55840229 -171684349 + AT_rich Low_complexity Low_complexity 1 68 0 367 252 32 38 chr3 55840229 55840396 -171684182 - MER69 DNA AcHobo -50 2476 2245 1533 167 130 0 chr3 55840396 55840666 -171683912 - AluJb SINE Alu -7 305 1 367 252 32 38 chr3 55840666 55840755 -171683823 - MER69 DNA AcHobo -281 2245 2157 1418 202 27 0 chr3 55840760 55841017 -171683561 - AluJo SINE Alu -6 306 43 2259 102 0 3 chr3 55841017 55841310 -171683268 - AluSq SINE Alu -21 292 1 286 86 52 0 chr3 55841310 55841368 -171683210 + T-rich Low_complexity Low_complexity 5 65 0 879 144 0 20 chr3 55841368 55841514 -171683064 - FLAM_C SINE Alu 0 143 1 1325 162 110 22 chr3 55841566 55841838 -171682740 - AluJo SINE Alu -16 296 1 1692 140 92 0 chr3 55841878 55841995 -171682583 + AluSx SINE Alu 1 106 -206 2361 76 3 10 chr3 55841995 55842296 -171682282 + AluY SINE Alu 3 301 -10 1692 140 92 0 chr3 55842296 55842450 -171682128 + AluSx SINE Alu 106 297 -15 1512 178 21 17 chr3 55842463 55842750 -171681828 + AluJb SINE Alu 1 288 -24 306 0 0 0 chr3 55843080 55843114 -171681464 + (T)n Simple_repeat Simple_repeat 1 34 0 2828 151 15 43 chr3 55843114 55843837 -171680741 - HERVH LTR ERV1 -6693 1020 1 1256 177 109 86 chr3 55843838 55844184 -171680394 - LTR7 LTR ERV1 0 450 90 2536 81 0 10 chr3 55844184 55844494 -171680084 + AluY SINE Alu 1 307 -4 1256 177 109 86 chr3 55844494 55844587 -171679991 - LTR7 LTR ERV1 -360 90 1 700 123 0 0 chr3 55844587 55844693 -171679885 + AluSg/x SINE Alu 205 310 -2 2260 90 38 0 chr3 55844700 55844989 -171679589 + AluSp SINE Alu 1 300 -13 2117 92 0 86 chr3 55844989 55845314 -171679264 + AluSg SINE Alu 1 297 -13 547 147 0 11 chr3 55845324 55845419 -171679159 + AluSg SINE Alu 34 127 -183 1363 157 21 84 chr3 55845423 55845575 -171679003 + AluJo SINE Alu 6 133 -179 2266 112 0 3 chr3 55845575 55845871 -171678707 + AluSg SINE Alu 1 295 -15 1363 157 21 84 chr3 55845871 55846005 -171678573 + AluJo SINE Alu 133 274 -38 198 102 20 41 chr3 55846027 55846076 -171678502 + (TA)n Simple_repeat Simple_repeat 1 48 0 2329 102 3 34 chr3 55846125 55846447 -171678131 + AluSx SINE Alu 1 312 0 432 305 34 42 chr3 55846448 55846648 -171677930 + L1ME LINE L1 5475 5539 -582 2541 67 0 0 chr3 55846648 55846946 -171677632 + AluY SINE Alu 1 298 -13 432 305 34 42 chr3 55846946 55847069 -171677509 + L1ME LINE L1 5539 5662 -459 933 221 208 31 chr3 55847073 55847390 -171677188 - MLT1G1 LTR MaLR -7 588 216 400 218 20 10 chr3 55847392 55847493 -171677085 - MER66B LTR ERV1 0 486 385 614 48 8 57 chr3 55847507 55847631 -171676947 + SVA Other Other 1 118 -1268 7569 61 8 15 chr3 55847735 55849309 -171675269 + SVA Other Other 95 1385 -1 1899 167 27 6 chr3 55849349 55849685 -171674893 - MER66B LTR ERV1 -141 345 3 751 144 15 23 chr3 55849695 55849827 -171674751 - FLAM_C SINE Alu 0 133 3 666 247 13 0 chr3 55849848 55850002 -171674576 - MLT1G1 LTR MaLR -400 167 12 1114 138 0 33 chr3 55850162 55850327 -171674251 - AluSg/x SINE Alu -18 294 134 2165 112 0 34 chr3 55850327 55850650 -171673928 - AluSq SINE Alu -1 312 1 1114 138 0 33 chr3 55850650 55850665 -171673913 - AluSg/x SINE Alu -178 134 120 23 0 0 0 chr3 55851086 55851109 -171673469 + AT_rich Low_complexity Low_complexity 1 23 0 2167 135 0 10 chr3 55851117 55851429 -171673149 + AluSg SINE Alu 2 310 0 2298 109 3 0 chr3 55851778 55852082 -171672496 + AluSx SINE Alu 1 305 -7 362 260 137 39 chr3 55852084 55852288 -171672290 - L2 LINE L2 -978 2336 2113 2333 81 7 17 chr3 55854862 55855160 -171669418 + AluSx SINE Alu 1 295 -17 1484 96 172 8 chr3 55855184 55855434 -171669144 + AluSg SINE Alu 3 293 -7 2338 106 0 7 chr3 55855557 55855860 -171668718 + AluSq SINE Alu 1 301 -12 2219 106 0 0 chr3 55855925 55856241 -171668337 + AluSg SINE Alu 1 316 0 1882 96 8 4 chr3 55856485 55856735 -171667843 + AluSx SINE Alu 1 251 -61 189 107 0 0 chr3 55856735 55856763 -171667815 + (A)n Simple_repeat Simple_repeat 1 28 0 2013 100 0 19 chr3 55857011 55857176 -171667402 - AluSc SINE Alu -13 296 136 2251 121 10 0 chr3 55857176 55857482 -171667096 - AluSg SINE Alu -1 309 1 2013 100 0 19 chr3 55857482 55857587 -171666991 - AluSc SINE Alu -173 136 31 977 146 100 129 chr3 55858011 55858196 -171666382 - AluJo SINE Alu -1 301 127 1744 86 0 9 chr3 55858196 55858418 -171666160 + AluY SINE Alu 75 294 -17 977 146 100 129 chr3 55858418 55858541 -171666037 - AluJo SINE Alu -175 127 2 2292 120 0 0 chr3 55859105 55859404 -171665174 - AluSx SINE Alu -13 299 1 828 158 72 0 chr3 55859425 55859564 -171665014 - AluJo SINE Alu -163 149 1 1795 196 19 109 chr3 55859653 55859758 -171664820 + MLT2B1 LTR ERVL 1 114 -406 2097 129 7 16 chr3 55859758 55860068 -171664510 - AluSq SINE Alu -6 307 1 1795 196 19 109 chr3 55860068 55860459 -171664119 + MLT2B1 LTR ERVL 114 442 -78 829 143 0 50 chr3 55860459 55860599 -171663979 + FLAM_C SINE Alu 1 133 0 1795 196 19 109 chr3 55860599 55860672 -171663906 + MLT2B1 LTR ERVL 442 520 0 234 0 0 0 chr3 55861271 55861297 -171663281 + (T)n Simple_repeat Simple_repeat 1 26 0 2077 146 17 0 chr3 55862025 55862327 -171662251 + AluSx SINE Alu 1 307 -5 582 342 43 18 chr3 55862498 55862776 -171661802 + L1 LINE L1 4128 4412 -1734 2248 102 26 0 chr3 55862779 55863082 -171661496 - AluSx SINE Alu -1 311 1 429 266 126 40 chr3 55863137 55863359 -171661219 - MLT1L LTR MaLR -156 459 219 18271 178 47 39 chr3 55863599 55864499 -171660079 - HERVH LTR ERV1 -1855 5858 4966 2418 77 0 10 chr3 55864499 55864797 -171659781 + AluY SINE Alu 1 295 -16 18271 178 47 39 chr3 55864797 55865268 -171659310 - HERVH LTR ERV1 -2747 4966 4500 2392 92 0 3 chr3 55865268 55865572 -171659006 + AluY SINE Alu 1 303 -8 18271 178 47 39 chr3 55865572 55868437 -171656141 - HERVH LTR ERV1 -3213 4500 1589 1547 157 52 72 chr3 55869155 55869460 -171655118 - AluJo SINE Alu -13 299 1 2326 95 3 3 chr3 55870510 55870806 -171653772 - AluSg SINE Alu -14 296 1 1580 168 44 60 chr3 55870911 55871109 -171653469 - AluJo SINE Alu -2 310 117 2290 103 10 3 chr3 55871109 55871410 -171653168 + AluSp SINE Alu 2 304 -9 1580 168 44 60 chr3 55871410 55871526 -171653052 - AluJo SINE Alu -195 117 1 244 195 0 0 chr3 55873577 55873618 -171650960 + 5S rRNA rRNA 2 42 -79 766 231 6 0 chr3 55873731 55873887 -171650691 - FRAM SINE Alu -9 157 1 2300 86 0 3 chr3 55873946 55874238 -171650340 - AluY SINE Alu 0 311 21 247 220 20 0 chr3 55874712 55874762 -171649816 - MER5A DNA MER1_type -83 106 56 2340 85 7 10 chr3 55874918 55875224 -171649354 - AluY SINE Alu -6 305 1 225 130 19 19 chr3 55875259 55875313 -171649265 - AluSp/q SINE Alu 0 303 250 2525 70 3 0 chr3 55875415 55875715 -171648863 - AluY SINE Alu -10 301 1 1078 175 6 0 chr3 55876023 55876194 -171648384 - AluJb SINE Alu -4 308 137 2367 76 10 7 chr3 55876199 55876502 -171648076 - AluY SINE Alu -7 304 1 195 291 63 13 chr3 55877056 55877135 -171647443 - L2 LINE L2 -275 3038 2956 584 223 112 40 chr3 55877708 55877959 -171646619 - L1ME3 LINE L1 -30 6132 5864 2130 132 7 10 chr3 55878063 55878196 -171646382 + AluSx SINE Alu 1 133 -179 2360 102 0 7 chr3 55878196 55878492 -171646086 + AluSq SINE Alu 1 296 -17 276 30 0 0 chr3 55878492 55878525 -171646053 + (CATA)n Simple_repeat Simple_repeat 2 34 0 2130 132 7 10 chr3 55878531 55878707 -171645871 + AluSx SINE Alu 133 309 -3 2117 113 13 10 chr3 55878724 55879026 -171645552 + AluSx SINE Alu 6 308 -4 307 325 31 31 chr3 55879139 55879330 -171645248 - MIR SINE MIR -15 247 57 2472 80 3 3 chr3 55879804 55880106 -171644472 - AluSp SINE Alu -11 302 1 1902 141 14 17 chr3 55880495 55880811 -171643767 + AluSp SINE Alu 1 313 0 1371 218 20 3 chr3 55880814 55880959 -171643619 + AluJo SINE Alu 1 142 -170 2282 82 0 41 chr3 55880959 55881274 -171643304 + AluSp SINE Alu 1 302 -11 1371 218 20 3 chr3 55881274 55881421 -171643157 + AluJo SINE Alu 142 298 -14 2397 90 3 0 chr3 55881421 55881731 -171642847 + AluY SINE Alu 1 311 0 639 197 42 56 chr3 55881731 55881784 -171642794 + L1ME1 LINE L1 4989 5041 -1105 1188 171 71 26 chr3 55881784 55882027 -171642551 + MER33 DNA MER1_type 1 262 -2323 1840 135 0 40 chr3 55882027 55882330 -171642248 - AluSx SINE Alu -8 304 14 1188 171 71 26 chr3 55882330 55882396 -171642182 + MER33 DNA MER1_type 262 324 0 639 197 42 56 chr3 55882396 55882555 -171642023 + L1ME1 LINE L1 5041 5198 -948 714 169 8 0 chr3 55882555 55882673 -171641905 + FLAM_C SINE Alu 1 119 -14 621 227 130 0 chr3 55882681 55882835 -171641743 + L1ME1 LINE L1 5473 5646 -520 1300 159 4 49 chr3 55882839 55883065 -171641513 + AluSg/x SINE Alu 81 296 -16 973 89 0 0 chr3 55883070 55883193 -171641385 + AluSp/q SINE Alu 176 298 -15 1082 209 119 6 chr3 55883194 55883538 -171641040 + L1ME1 LINE L1 5779 6161 -5 605 126 0 72 chr3 55883571 55883682 -171640896 - MER5A DNA MER1_type -80 109 7 270 327 109 6 chr3 55883992 55884157 -171640421 + L2 LINE L2 2864 3045 -227 2275 114 3 0 chr3 55885043 55885340 -171639238 - AluSx SINE Alu -13 299 2 573 114 0 11 chr3 55886081 55886169 -171638409 + AluS SINE Alu 221 307 -2 1421 199 36 25 chr3 55886354 55886631 -171637947 + AluJb SINE Alu 1 280 -32 264 77 0 0 chr3 55886632 55886671 -171637907 + (CAA)n Simple_repeat Simple_repeat 1 39 0 1979 159 7 7 chr3 55886702 55887010 -171637568 + AluJb SINE Alu 1 308 -4 710 220 8 0 chr3 55887260 55887392 -171637186 - FLAM_A SINE Alu 0 133 1 2338 109 0 0 chr3 55887612 55887916 -171636662 + AluSx SINE Alu 1 304 -8 870 173 0 0 chr3 55887923 55888056 -171636522 + AluJo/FLAM SINE Alu 1 133 -179 2357 102 0 0 chr3 55888058 55888362 -171636216 + AluY SINE Alu 1 304 -7 28 0 0 0 chr3 55888384 55888412 -171636166 + AT_rich Low_complexity Low_complexity 1 28 0 1734 134 14 31 chr3 55888420 55888710 -171635868 + AluJb SINE Alu 1 285 -27 441 0 0 0 chr3 55888710 55888759 -171635819 + (TAGA)n Simple_repeat Simple_repeat 2 50 0 240 111 0 0 chr3 55888760 55888805 -171635773 + (CAGA)n Simple_repeat Simple_repeat 2 46 0 2082 125 14 0 chr3 55888831 55889131 -171635447 + AluSx SINE Alu 1 304 0 1277 162 23 49 chr3 55889233 55889499 -171635079 + AluSq SINE Alu 1 259 -54 369 0 0 0 chr3 55891587 55891622 -171632956 + (CA)n Simple_repeat Simple_repeat 1 76 0 369 0 0 0 chr3 55891622 55891663 -171632915 + (CA)n Simple_repeat Simple_repeat 2 42 0 258 263 29 51 chr3 55891722 55891897 -171632681 + (CAGAGA)n Simple_repeat Simple_repeat 4 174 0 387 60 0 0 chr3 55892819 55892869 -171631709 + (GGGA)n Simple_repeat Simple_repeat 1 50 0 23 54 0 0 chr3 55893541 55893578 -171631000 + GC_rich Low_complexity Low_complexity 1 37 0 243 182 0 0 chr3 55894131 55894175 -171630403 + L2 LINE L2 2931 2974 -339 1176 169 128 55 chr3 55894535 55894808 -171629770 - AluJo SINE Alu -1 311 19 2018 115 21 0 chr3 55896783 55897069 -171627509 - AluSx SINE Alu -20 292 1 366 341 83 18 chr3 55897653 55897870 -171626708 + L1MC4a LINE L1 6508 6738 -1070 295 273 13 0 chr3 55897894 55897971 -171626607 + MER58 DNA MER1_type 37 114 -2306 896 139 0 0 chr3 55897971 55898093 -171626485 + FLAM_C SINE Alu 1 122 -21 189 74 0 0 chr3 55898093 55898120 -171626458 + (GGGGA)n Simple_repeat Simple_repeat 1 27 0 2292 112 7 0 chr3 55898125 55898430 -171626148 + AluSx SINE Alu 1 307 -5 200 216 0 0 chr3 55898433 55898470 -171626108 + A-rich Low_complexity Low_complexity 3 39 0 1824 89 73 19 chr3 55899150 55899409 -171625169 + AluSx SINE Alu 1 273 -39 315 0 0 0 chr3 55899419 55899454 -171625124 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1962 99 75 0 chr3 55899464 55899746 -171624832 - AluSq SINE Alu -10 303 1 343 151 149 12 chr3 55899747 55899870 -171624708 + L1ME1 LINE L1 6020 6161 -5 214 275 99 22 chr3 55900234 55900325 -171624253 + L2 LINE L2 3143 3240 -32 21 57 0 0 chr3 55902139 55902174 -171622404 + AT_rich Low_complexity Low_complexity 1 35 0 180 111 0 0 chr3 55902557 55902584 -171621994 + (GGA)n Simple_repeat Simple_repeat 3 29 0 242 39 77 0 chr3 55903436 55903488 -171621090 + (TA)n Simple_repeat Simple_repeat 1 56 0 24 0 0 70 chr3 55903488 55903506 -171621072 + AT_rich Low_complexity Low_complexity 1 19 -21 2223 104 3 3 chr3 55903506 55903794 -171620784 - AluSc SINE Alu -21 288 1 24 0 0 70 chr3 55903794 55903818 -171620760 + AT_rich Low_complexity Low_complexity 19 40 0 1967 128 4 0 chr3 55904609 55904883 -171619695 - AluSg SINE Alu -35 275 1 1033 55 0 0 chr3 55904932 55905060 -171619518 + AluY SINE Alu 175 302 -9 276 182 18 0 chr3 55905087 55905142 -171619436 + L1MC5 LINE L1 7805 7860 -101 535 148 0 0 chr3 55905900 55905988 -171618590 - FLAM_C SINE Alu -1 142 55 439 252 19 0 chr3 55907696 55907803 -171616775 + MER81 DNA DNA 6 114 0 265 191 181 96 chr3 55908224 55908318 -171616260 - L2 LINE L2 -5 3308 3207 1515 289 108 20 chr3 55908430 55909183 -171615395 + L2 LINE L2 2150 2968 -346 333 240 26 45 chr3 55909465 55909619 -171614959 + FRAM SINE Alu 10 160 -6 2114 118 7 10 chr3 55909955 55910286 -171614292 - AluSx SINE Alu 0 312 1 33 0 0 0 chr3 55910291 55910324 -171614254 + AT_rich Low_complexity Low_complexity 1 33 0 2185 78 0 44 chr3 55910352 55910672 -171613906 - AluY SINE Alu 0 307 1 742 247 84 49 chr3 55911220 55911483 -171613095 - L2 LINE L2 -20 3293 3022 1095 155 0 6 chr3 55911484 55911645 -171612933 + FRAM SINE Alu 1 157 -19 700 245 18 12 chr3 55911645 55911808 -171612770 - L2 LINE L2 -276 3037 2874 1208 122 5 51 chr3 55911846 55912043 -171612535 - AluSq SINE Alu -12 301 114 2213 118 3 3 chr3 55912173 55912478 -171612100 - AluSx SINE Alu -6 306 2 2325 107 3 0 chr3 55912499 55912809 -171611769 - AluSq SINE Alu -2 311 1 1100 90 0 0 chr3 55912873 55913006 -171611572 - AluSq SINE Alu -179 133 1 774 135 68 0 chr3 55913006 55913139 -171611439 - L1ME LINE L1 -501 5665 5524 795 196 0 7 chr3 55914048 55914186 -171610392 - FLAM_C SINE Alu -5 138 2 199 248 86 103 chr3 55914266 55914383 -171610195 - MIR3 SINE MIR -40 168 54 2201 103 40 3 chr3 55914664 55914966 -171609612 - AluSp SINE Alu 0 313 1 1561 165 55 22 chr3 55915156 55915321 -171609257 - AluJb SINE Alu -31 281 102 2252 102 0 10 chr3 55915321 55915624 -171608954 + AluSx SINE Alu 1 300 -12 1561 165 55 22 chr3 55915624 55915730 -171608848 - AluJb SINE Alu -210 102 1 1068 146 0 6 chr3 55916235 55916393 -171608185 + AluJo SINE Alu 123 279 -33 23 33 0 0 chr3 55916422 55916452 -171608126 + AT_rich Low_complexity Low_complexity 1 30 0 1864 136 35 57 chr3 55916452 55916769 -171607809 + AluSx SINE Alu 1 310 -2 2527 51 7 0 chr3 55916774 55917069 -171607509 + AluY SINE Alu 1 297 -14 1948 178 0 3 chr3 55917111 55917414 -171607164 - AluJb SINE Alu -10 302 1 1833 144 6 58 chr3 55918815 55919127 -171605451 + AluJb SINE Alu 1 296 -16 946 178 91 35 chr3 55919892 55920089 -171604489 - AluJb SINE Alu -104 208 1 1114 208 98 60 chr3 55920095 55920543 -171604035 - MER69 DNA AcHobo -52 2474 2010 638 233 137 32 chr3 55920541 55920790 -171603788 - MER69 DNA AcHobo -658 568 294 * 4526 80 5 47 chr3 55920793 55921085 -171603493 + LTR10E LTR ERV1 1 304 -329 2333 104 7 7 chr3 55921085 55921393 -171603185 + AluY SINE Alu 1 308 -3 4526 80 5 47 chr3 55921393 55921761 -171602817 + LTR10E LTR ERV1 304 633 0 408 258 86 0 chr3 55921872 55922000 -171602578 + LTR16A LTR ERVL 307 445 -5 357 294 20 0 chr3 55921989 55922091 -171602487 - MER69 DNA AcHobo -2229 297 194 * 731 170 36 0 chr3 55922098 55922210 -171602368 - FLAM_C SINE Alu -16 117 2 639 213 40 49 chr3 55922211 55922385 -171602193 + L1M4 LINE L1 1109 1282 -5260 2263 86 7 0 chr3 55922385 55922686 -171601892 + AluY SINE Alu 1 303 -8 639 213 40 49 chr3 55922686 55922736 -171601842 + L1M4 LINE L1 1282 1331 -5211 773 250 10 48 chr3 55922746 55922913 -171601665 + L1M4 LINE L1 2630 2783 -3861 1790 161 16 10 chr3 55922913 55923223 -171601355 + AluJb SINE Alu 1 312 0 773 250 10 48 chr3 55923223 55923347 -171601231 + L1M4 LINE L1 2783 2910 -3734 2078 95 0 20 chr3 55923352 55923646 -171600932 - AluSx SINE Alu -19 293 6 641 127 18 57 chr3 55923658 55923823 -171600755 - AluSg/x SINE Alu 0 312 120 1808 126 23 0 chr3 55924447 55924748 -171599830 - AluSq SINE Alu -5 308 1 649 186 16 16 chr3 55924770 55924894 -171599684 - FRAM SINE Alu -31 145 22 26 30 0 0 chr3 56025006 56025039 -171499539 + AT_rich Low_complexity Low_complexity 1 33 0 1070 271 209 12 chr3 56025185 56025856 -171498722 - L1MB4 LINE L1 -4 6176 5374 305 102 51 0 chr3 56025859 56025918 -171498660 + AluSp/q SINE Alu 242 303 0 834 221 53 0 chr3 56026518 56026708 -171497870 - MLT2B1 LTR ERVL -320 200 1 629 329 126 17 chr3 56026947 56027588 -171496990 - L2 LINE L2 0 3313 2597 749 223 0 7 chr3 56027791 56028068 -171496510 + CT-rich Low_complexity Low_complexity 1 274 0 256 290 140 14 chr3 56028096 56028382 -171496196 + LSAU Satellite Satellite 132 453 -45 368 181 36 123 chr3 56029618 56029756 -171494822 + LSAU Satellite Satellite 2 127 -371 25 0 0 0 chr3 56030150 56030175 -171494403 + AT_rich Low_complexity Low_complexity 1 25 0 369 0 0 0 chr3 56030406 56030447 -171494131 + (A)n Simple_repeat Simple_repeat 1 41 0 227 130 0 0 chr3 56031167 56031213 -171493365 + L1M1 LINE L1 3209 3254 -4311 713 99 25 25 chr3 56031590 56031711 -171492867 + 5S rRNA rRNA 1 121 0 217 242 5 16 chr3 56032526 56032726 -171491852 + CT-rich Low_complexity Low_complexity 1 197 0 1957 196 68 25 chr3 56032730 56033170 -171491408 - LTR2B LTR ERV1 0 490 32 215 161 18 0 chr3 56033194 56033250 -171491328 + (TG)n Simple_repeat Simple_repeat 2 58 0 230 234 0 27 chr3 56034334 56034524 -171490054 + CT-rich Low_complexity Low_complexity 1 184 0 237 286 0 0 chr3 56034532 56034616 -171489962 + (TG)n Simple_repeat Simple_repeat 1 84 0 240 298 0 0 chr3 56035426 56035598 -171488980 + CT-rich Low_complexity Low_complexity 1 172 0 448 303 13 7 chr3 56035641 56035943 -171488635 + LSAU Satellite Satellite 1 304 0 24 32 0 0 chr3 56036123 56036154 -171488424 + AT_rich Low_complexity Low_complexity 1 31 0 368 251 187 57 chr3 56036154 56036437 -171488141 + L1M2 LINE L1 1750 2069 -4780 230 240 0 0 chr3 56038249 56038299 -171486279 + GA-rich Low_complexity Low_complexity 1 50 0 438 223 0 0 chr3 56039368 56039489 -171485089 + CT-rich Low_complexity Low_complexity 1 121 0 254 275 0 0 chr3 56039501 56039570 -171485008 + CT-rich Low_complexity Low_complexity 4 72 0 285 291 36 31 chr3 56039621 56039918 -171484660 + LSAU Satellite Satellite 141 498 0 598 165 19 0 chr3 56040856 56040959 -171483619 + Tigger1 DNA MER2_type 406 510 -1908 * 7443 136 27 88 chr3 56040954 56041292 -171483286 + Tigger1 DNA MER2_type 1006 1363 -1055 1693 158 16 7 chr3 56041292 56041602 -171482976 + AluSq SINE Alu 1 313 0 7443 136 27 88 chr3 56041602 56042489 -171482089 + Tigger1 DNA MER2_type 1363 2125 -293 2957 214 18 73 chr3 56042489 56043515 -171481063 + LTR5 LTR ERVK 1 969 0 7443 136 27 88 chr3 56043515 56043793 -171480785 + Tigger1 DNA MER2_type 2125 2418 0 952 179 6 0 chr3 56043797 56043965 -171480613 - AluJo/FRAM SINE Alu -9 303 135 2305 57 3 0 chr3 56043965 56044261 -171480317 - AluY SINE Alu -14 297 1 8386 157 26 81 chr3 56044501 56046347 -171478231 - L1M1 LINE L1 -4343 3222 1477 * 10564 198 27 8 chr3 56046320 56048612 -171475966 - L1P LINE L1 -796 6769 4435 210 118 0 0 chr3 56049523 56049557 -171475021 + (CA)n Simple_repeat Simple_repeat 2 35 0 317 250 0 0 chr3 56049563 56049643 -171474935 + MER103 DNA DNA 12 91 -75 289 220 0 22 chr3 56049703 56049794 -171474784 + L2 LINE L2 1996 2084 -1230 189 293 172 0 chr3 56050008 56050066 -171474512 + L2 LINE L2 3155 3222 -50 2473 206 21 0 chr3 56050936 56051450 -171473128 - L1PB4 LINE L1 -12 6144 5620 299 241 60 0 chr3 56051728 56051811 -171472767 + L2 LINE L2 3185 3272 0 2177 184 106 38 chr3 56052026 56052554 -171472024 + LTR6A LTR ERV1 1 564 0 263 250 167 0 chr3 56053263 56053335 -171471243 + L2 LINE L2 3230 3313 0 22 56 0 0 chr3 56054092 56054128 -171470450 + AT_rich Low_complexity Low_complexity 1 36 0 255 200 0 0 chr3 56054315 56054360 -171470218 - MLT1H1 LTR MaLR 0 590 546 573 269 147 28 chr3 56054462 56054867 -171469711 - MLT1H1 LTR MaLR -120 447 1 477 50 0 0 chr3 56055563 56055623 -171468955 + (TA)n Simple_repeat Simple_repeat 1 60 0 252 59 0 0 chr3 56055860 56055894 -171468684 + (TGG)n Simple_repeat Simple_repeat 1 34 0 327 130 0 0 chr3 56055914 56055968 -171468610 + (CTG)n Simple_repeat Simple_repeat 1 54 0 659 257 121 38 chr3 56055985 56056300 -171468278 - L1PB4 LINE L1 -9 6147 5807 406 60 15 30 chr3 56056322 56056389 -171468189 + (TTTTC)n Simple_repeat Simple_repeat 5 70 0 255 213 9 130 chr3 56056404 56056512 -171468066 - FLAM SINE Alu -25 108 51 2741 56 20 3 chr3 56056971 56057329 -171467249 - L1PA4 LINE L1 -3 6152 5789 317 223 48 39 chr3 56057487 56057590 -171466988 + MER89 LTR ERV1 323 426 -133 324 0 0 0 chr3 56057748 56057784 -171466794 + (CA)n Simple_repeat Simple_repeat 1 36 0 1386 191 25 0 chr3 56057916 56058193 -171466385 + AluSx SINE Alu 1 284 -28 465 205 71 31 chr3 56058211 56058338 -171466240 + AluJb SINE Alu 130 261 -51 791 140 14 14 chr3 56058372 56058586 -171465992 + CT-rich Low_complexity Low_complexity 1 214 0 386 123 0 0 chr3 56058586 56058643 -171465935 - AluJ/FLAM SINE Alu -242 60 4 825 203 138 61 chr3 56058723 56058878 -171465700 - AluJo SINE Alu -26 286 102 2085 103 3 13 chr3 56058878 56059190 -171465388 - AluSp SINE Alu -4 309 1 825 203 138 61 chr3 56059190 56059295 -171465283 - AluJo SINE Alu -210 102 6 735 52 0 0 chr3 56059334 56059430 -171465148 + (TTTC)n Simple_repeat Simple_repeat 3 98 0 198 0 0 0 chr3 56059489 56059511 -171465067 + (CGAGG)n Simple_repeat Simple_repeat 1 22 0 792 241 7 90 chr3 56059961 56060251 -171464327 + L1PA13 LINE L1 5888 6153 -10 339 130 0 0 chr3 56060254 56060308 -171464270 + (GA)n Simple_repeat Simple_repeat 1 54 0 1537 150 44 14 chr3 56060398 56060692 -171463886 - AluSx SINE Alu 0 312 10 343 91 0 0 chr3 56060797 56060841 -171463737 + AluSp/q SINE Alu 240 283 -20 489 34 0 0 chr3 56060856 56060915 -171463663 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 1614 143 3 62 chr3 56060984 56061463 -171463115 + AluSg SINE Alu 8 467 0 510 192 0 0 chr3 56061491 56061642 -171462936 + CT-rich Low_complexity Low_complexity 2 152 0 705 171 0 0 chr3 56061678 56061848 -171462730 + CT-rich Low_complexity Low_complexity 1 170 0 369 189 0 0 chr3 56061873 56061968 -171462610 + CT-rich Low_complexity Low_complexity 2 96 0 2342 84 0 0 chr3 56061981 56062289 -171462289 - AluY SINE Alu -1 310 3 674 175 6 0 chr3 56062293 56062470 -171462108 + CT-rich Low_complexity Low_complexity 1 178 0 355 163 12 44 chr3 56062489 56062649 -171461929 + (TCTCTG)n Simple_repeat Simple_repeat 3 157 0 * 678 189 0 0 chr3 56062621 56062906 -171461672 + CT-rich Low_complexity Low_complexity 1 285 0 407 239 15 31 chr3 56062906 56063036 -171461542 + MER39B LTR ERV1 284 411 -242 1800 111 0 21 chr3 56063169 56063499 -171461079 + AluSx SINE Alu 1 324 0 258 160 0 0 chr3 56064619 56064669 -171459909 + (CTG)n Simple_repeat Simple_repeat 1 50 0 630 173 7 0 chr3 56064757 56065062 -171459516 + CT-rich Low_complexity Low_complexity 1 307 0 296 157 22 56 chr3 56065063 56065152 -171459426 + (TCTCTG)n Simple_repeat Simple_repeat 2 87 0 530 157 22 17 chr3 56065153 56065331 -171459247 + (TCTG)n Simple_repeat Simple_repeat 2 180 0 * 617 185 6 0 chr3 56065324 56065502 -171459076 + CT-rich Low_complexity Low_complexity 2 180 0 203 178 17 34 chr3 56065486 56065604 -171458974 + (TCTCTG)n Simple_repeat Simple_repeat 4 119 0 * 597 194 0 0 chr3 56065595 56065775 -171458803 + CT-rich Low_complexity Low_complexity 1 180 0 279 281 0 35 chr3 56066184 56066298 -171458280 - L1MC/D LINE L1 -585 5774 5665 920 109 166 23 chr3 56067114 56067289 -171457289 - AluSg/x SINE Alu -17 293 94 24 0 0 0 chr3 56067356 56067380 -171457198 + AT_rich Low_complexity Low_complexity 1 24 0 1948 125 0 3 chr3 56068074 56068412 -171456166 - AluSc SINE Alu 0 337 1 186 43 0 0 chr3 56068808 56068831 -171455747 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 267 269 37 37 chr3 56071233 56071341 -171453237 - LTR54B LTR ERV1 -352 146 39 591 154 0 130 chr3 56071682 56071851 -171452727 + AluJb SINE Alu 137 283 -29 2085 110 3 17 chr3 56071930 56072231 -171452347 - AluSp SINE Alu -16 297 1 24 71 0 14 chr3 56072238 56072289 -171452289 + AT_rich Low_complexity Low_complexity 1 52 -17 2278 68 0 14 chr3 56072289 56072581 -171451997 - AluY SINE Alu -23 288 1 24 71 0 14 chr3 56072581 56072599 -171451979 + AT_rich Low_complexity Low_complexity 52 69 0 628 147 108 16 chr3 56072620 56072749 -171451829 - AluJb SINE Alu -171 141 1 218 81 27 0 chr3 56073739 56073776 -171450802 + (TA)n Simple_repeat Simple_repeat 2 39 0 2255 70 3 3 chr3 56073776 56074060 -171450518 - AluY SINE Alu -27 284 1 375 119 0 0 chr3 56074060 56074119 -171450459 - L1P LINE L1 -806 5362 5304 4181 160 25 15 chr3 56074123 56074871 -171449707 + L1PA16 LINE L1 5390 6145 -21 12486 214 93 16 chr3 56074872 56077799 -171446779 + L1M1 LINE L1 7 3159 -4406 * 36826 63 3 0 chr3 56077790 56082424 -171442154 - L1P LINE L1 -1491 4655 7 5175 244 63 17 chr3 56082438 56084327 -171440251 + L1M1 LINE L1 3288 5305 -2260 1903 153 0 0 chr3 56084327 56084648 -171439930 + AluSx SINE Alu 1 321 0 5175 244 63 17 chr3 56084648 56085032 -171439546 + L1M1 LINE L1 5305 5670 -1895 1801 190 24 6 chr3 56085034 56085371 -171439207 + MSTA LTR MaLR 1 343 -85 6880 221 34 8 chr3 56085382 56086883 -171437695 + MSTA-int LTR MaLR 112 1651 0 1772 221 61 10 chr3 56086883 56087290 -171437288 + MSTA LTR MaLR 1 428 0 2289 220 64 9 chr3 56087290 56087643 -171436935 + L1M1 LINE L1 5668 6000 -1565 1942 161 3 6 chr3 56087643 56087954 -171436624 + AluSg SINE Alu 1 310 0 2289 220 64 9 chr3 56087954 56088242 -171436336 + L1M1 LINE L1 6000 6344 -1221 731 93 13 0 chr3 56088242 56088500 -171436078 - CER Satellite Satellite 0 261 1 5755 179 23 8 chr3 56088504 56088921 -171435657 + L1MA2 LINE L1 4850 5259 -1045 1929 146 39 62 chr3 56088921 56089249 -171435329 + THE1C LTR MaLR 1 320 -55 2042 139 3 0 chr3 56089249 56089536 -171435042 + AluSg1 SINE Alu 2 289 -20 1929 146 39 62 chr3 56089536 56089591 -171434987 + THE1C LTR MaLR 320 375 0 5755 179 23 8 chr3 56089591 56090611 -171433967 + L1MA2 LINE L1 5259 6304 0 21 0 0 0 chr3 56090615 56090636 -171433942 + AT_rich Low_complexity Low_complexity 1 21 0 761 169 103 0 chr3 56090638 56090774 -171433804 - MER4B LTR ERV1 -460 150 1 1971 152 3 0 chr3 56091098 56091450 -171433128 + AluSx SINE Alu 2 312 0 883 111 40 0 chr3 56091796 56091922 -171432656 - FLAM_C SINE Alu -2 131 1 610 252 7 7 chr3 56091925 56092068 -171432510 - L1MC4 LINE L1 -454 7588 7446 826 194 0 0 chr3 56092159 56092293 -171432285 - AluJb SINE Alu -50 262 129 7050 59 7 16 chr3 56092310 56093879 -171430699 - SVA Other Other -723 1374 53 760 36 27 9 chr3 56093879 56093990 -171430588 + (GGGAGA)n Simple_repeat Simple_repeat 3 115 0 824 273 5 10 chr3 56094311 56094505 -171430073 + MER41D LTR ERV1 365 557 0 8881 308 34 22 chr3 56095707 56095864 -171428714 + PRIMA41-int LTR ERV1 1582 1736 -6020 5600 139 36 13 chr3 56095864 56096811 -171427767 - LTR5 LTR ERVK 0 969 1 8881 308 34 22 chr3 56096811 56099558 -171425020 + PRIMA41-int LTR ERV1 1736 4581 -3175 2317 145 3 27 chr3 56099558 56099767 -171424811 - THE1B LTR MaLR 0 364 166 1760 145 4 0 chr3 56099767 56100043 -171424535 + AluSx SINE Alu 23 299 -13 2317 145 3 27 chr3 56100043 56100206 -171424372 - THE1B LTR MaLR -198 166 1 8881 308 34 22 chr3 56100206 56101808 -171422770 + PRIMA41-int LTR ERV1 4581 6163 -1593 460 0 33 0 chr3 56102120 56102180 -171422398 + (TAGA)n Simple_repeat Simple_repeat 4 65 0 5220 253 60 26 chr3 56102180 56104161 -171420417 - L1 LINE L1 -1209 4937 2889 9743 133 19 3 chr3 56105457 56105738 -171418840 - L1PA7 LINE L1 -5 6464 6189 2053 110 62 3 chr3 56105738 56106028 -171418550 - AluSp SINE Alu -6 307 1 9743 133 19 3 chr3 56106028 56108122 -171416456 - L1PA7 LINE L1 -280 6189 4099 4659 240 56 48 chr3 56108124 56109956 -171414622 - L1PA7 LINE L1 -4626 1825 10 717 314 35 50 chr3 56110180 56110635 -171413943 + L1MC4a LINE L1 5481 5928 -1880 380 242 20 65 chr3 56110878 56111031 -171413547 - L1M4 LINE L1 -2579 3567 3422 645 205 6 15 chr3 56111076 56111403 -171413175 + GA-rich Low_complexity Low_complexity 1 324 0 2103 154 15 56 chr3 56111677 56112085 -171412493 + MSTD LTR MaLR 4 394 -2 1037 94 8 0 chr3 56112364 56112541 -171412037 + BSR/Beta Satellite Satellite 1 178 -56 411 275 69 12 chr3 56112572 56112732 -171411846 + MIR SINE MIR 27 195 -67 509 244 82 65 chr3 56112732 56112807 -171411771 - MLT1I LTR MaLR 0 409 337 2162 104 0 44 chr3 56112807 56113123 -171411455 - AluY SINE Alu -9 302 1 509 244 82 65 chr3 56113123 56113338 -171411240 - MLT1I LTR MaLR -72 337 114 2005 156 0 0 chr3 56113350 56113645 -171410933 + AluSx SINE Alu 2 296 -16 290 248 89 38 chr3 56113802 56113959 -171410619 + LTR41 LTR ERVL 2 166 -607 218 336 35 17 chr3 56115057 56115173 -171409405 - MIR3 SINE MIR -78 130 13 493 237 73 66 chr3 56115664 56115975 -171408603 + MLT1H LTR MaLR 83 423 -27 295 279 48 58 chr3 56115996 56116246 -171408332 + L1M4 LINE L1 4957 5205 -941 2186 138 11 8 chr3 56116246 56116600 -171407978 + THE1A LTR MaLR 1 355 0 295 279 48 58 chr3 56116600 56116661 -171407917 + L1M4 LINE L1 5205 5265 -881 2039 120 3 0 chr3 56116688 56116972 -171407606 + AluSp SINE Alu 11 295 -18 264 226 9 66 chr3 56117772 56117878 -171406700 + L1ME4a LINE L1 5975 6074 -47 1583 235 19 14 chr3 56118907 56119269 -171405309 + MLT1A1 LTR MaLR 1 364 -1 187 240 0 60 chr3 56119340 56119390 -171405188 - L2 LINE L2 -10 3303 3257 382 232 28 55 chr3 56120122 56120303 -171404275 - L1MEc LINE L1 -4174 2222 2047 2390 114 40 11 chr3 56120306 56120684 -171403894 + MSTA LTR MaLR 3 391 -37 2049 107 0 30 chr3 56120686 56120984 -171403594 - AluSc SINE Alu -16 293 5 24 32 0 0 chr3 56121005 56121036 -171403542 + AT_rich Low_complexity Low_complexity 1 31 0 6095 38 0 51 chr3 56121040 56121883 -171402695 - L1PA4 LINE L1 -8 6147 5348 253 178 0 0 chr3 56121883 56121928 -171402650 + MSTA LTR MaLR 384 428 0 3357 274 59 59 chr3 56121930 56122500 -171402078 - L1MEc LINE L1 -4346 2050 1481 1957 162 0 0 chr3 56122500 56122802 -171401776 - AluJb SINE Alu -10 302 1 3357 274 59 59 chr3 56122802 56122836 -171401742 - L1MEc LINE L1 -4915 1481 1448 2370 102 0 3 chr3 56122836 56123149 -171401429 - AluSx SINE Alu 0 312 1 3357 274 59 59 chr3 56123149 56124365 -171400213 - L1MEc LINE L1 -4947 1449 229 338 298 0 10 chr3 56126457 56126561 -171398017 + L1 LINE L1 3 105 -5850 420 289 0 0 chr3 56126563 56126667 -171397911 + FLAM_A SINE Alu 2 105 -37 364 261 121 0 chr3 56126750 56126915 -171397663 + L1 LINE L1 4436 4620 -1414 474 332 92 12 chr3 56126949 56127286 -171397292 + L1MA9 LINE L1 459 822 -5133 2179 99 0 0 chr3 56127288 56127572 -171397006 + AluSg1 SINE Alu 1 284 -25 291 163 0 0 chr3 56127602 56127651 -171396927 + L1MA9 LINE L1 817 865 -5090 2466 233 77 35 chr3 56127711 56128883 -171395695 + L1MA9 LINE L1 4015 5235 -799 39561 62 3 4 chr3 56128884 56135035 -171389543 - L1PA4 LINE L1 -1 6154 4 2880 234 55 19 chr3 56135041 56135959 -171388619 + L1MA9 LINE L1 5225 6175 -25 214 242 10 10 chr3 56136003 56136102 -171388476 + (TA)n Simple_repeat Simple_repeat 2 100 0 180 303 45 34 chr3 56137148 56137237 -171387341 + MER5A DNA MER1_type 30 119 -70 649 193 0 0 chr3 56137239 56137348 -171387230 + FLAM_C SINE Alu 1 109 -34 183 208 21 31 chr3 56138254 56138350 -171386228 + CT-rich Low_complexity Low_complexity 1 95 0 386 221 7 0 chr3 56138394 56138530 -171386048 + (TG)n Simple_repeat Simple_repeat 2 138 0 22 35 0 0 chr3 56140067 56140096 -171384482 + AT_rich Low_complexity Low_complexity 1 29 0 1041 238 74 40 chr3 56140646 56141066 -171383512 + L1MD2 LINE L1 5908 6341 -18 309 303 84 8 chr3 56141565 56141684 -171382894 + MIR3 SINE MIR 66 193 -15 893 169 3 0 chr3 56141796 56142227 -171382351 + ALR/Alpha Satellite centromeric 1 432 -19 1585 62 5 0 chr3 56142227 56142451 -171382127 - L1P LINE L1 -894 5252 5028 1107 158 5 1 chr3 56142458 56160363 -171364215 - ALR/Alpha Satellite centromeric 0 17980 1 8251 59 2 0 chr3 56160363 56161464 -171363114 - L1P LINE L1 -1116 5030 3928 192 40 0 0 chr3 56161475 56161500 -171363078 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 39181 50 22 1 chr3 56161500 56167504 -171357074 - L1PA3 LINE L1 -24 6131 1 3093 49 2 0 chr3 56167505 56167916 -171356662 - L1P LINE L1 -2203 3943 3532 7026 57 3 0 chr3 56167916 56169045 -171355533 + L1PA3 LINE L1 5024 6155 0 1142 157 4 2 chr3 56169047 56173508 -171351070 - ALR/Alpha Satellite centromeric 0 4466 1 1142 159 2 0 chr3 56173521 56181179 -171343399 - ALR/Alpha Satellite centromeric -1 7667 1 1261 117 2 0 chr3 56181191 56187716 -171336862 - ALR/Alpha Satellite centromeric 0 6536 1 37862 58 24 3 chr3 56187819 56193838 -171330740 - L1PA3 LINE L1 -2 6153 1 1256 126 2 2 chr3 56193844 56197595 -171326983 - ALR/Alpha Satellite centromeric 0 8964 5214 2860 7 0 0 chr3 56197595 56197904 -171326674 + AluYb8 SINE Alu 1 309 -9 1256 126 2 2 chr3 56197904 56202809 -171321769 - ALR/Alpha Satellite centromeric -3750 5214 1 38180 60 26 1 chr3 56202822 56208828 -171315750 + L1PA3 LINE L1 1 6155 0 22 56 0 0 chr3 56209025 56209061 -171315517 + AT_rich Low_complexity Low_complexity 1 36 0 1157 127 0 0 chr3 56209067 56209394 -171315184 - ALR/Alpha Satellite centromeric -1 327 1 6965 28 0 0 chr3 56209395 56210266 -171314312 - L1PA2 LINE L1 -849 5297 4427 6995 39 2 0 chr3 56210266 56211117 -171313461 + L1PA2 LINE L1 5299 6153 -2 1250 123 2 0 chr3 56211117 56218866 -171305712 - ALR/Alpha Satellite centromeric 0 7759 1 294 241 23 11 chr3 56421299 56421386 -171103192 + L1ME3A LINE L1 6031 6118 -52 2252 105 3 10 chr3 56421390 56421694 -171102884 - AluSx SINE Alu -10 302 1 1176 149 65 10 chr3 56421726 56421927 -171102651 + AluSg/x SINE Alu 88 299 -11 288 296 30 30 chr3 56422194 56422326 -171102252 - MLT1J LTR MaLR -4 507 376 634 251 87 19 chr3 56422352 56422559 -171102019 - MLT1J LTR MaLR -290 221 1 2266 90 21 0 chr3 56422879 56423168 -171101410 - AluSg SINE Alu -15 295 1 2298 113 3 0 chr3 56424350 56424642 -171099936 + AluSg SINE Alu 1 293 -17 258 323 11 11 chr3 56424721 56424814 -171099764 + MIR3 SINE MIR 91 183 -25 2119 116 23 17 chr3 56425167 56425469 -171099109 - AluSq SINE Alu -7 306 3 195 69 0 0 chr3 56425471 56425500 -171099078 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1933 99 18 18 chr3 56425500 56425782 -171098796 - AluY SINE Alu -29 282 1 2269 116 0 0 chr3 56425782 56426076 -171098502 - AluSx SINE Alu -14 298 5 960 153 5 70 chr3 56426090 56426305 -171098273 - AluJb SINE Alu 0 312 112 180 0 0 0 chr3 56426476 56426496 -171098082 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2101 100 4 14 chr3 56426504 56426785 -171097793 - AluSq SINE Alu -35 278 1 2355 100 7 0 chr3 56426946 56427247 -171097331 - AluSg SINE Alu -7 303 1 2590 61 0 0 chr3 56427663 56427960 -171096618 + AluY SINE Alu 1 297 -14 2076 110 0 0 chr3 56428923 56429196 -171095382 + AluSg SINE Alu 29 301 -9 2253 62 0 22 chr3 56429397 56429672 -171094906 + AluY SINE Alu 3 271 -40 653 68 0 0 chr3 56429672 56429760 -171094818 + AluY SINE Alu 212 299 -12 2568 63 0 0 chr3 56429760 56430063 -171094515 + AluY SINE Alu 1 303 -8 2189 101 7 23 chr3 56430067 56430373 -171094205 + AluSg SINE Alu 1 301 -9 2226 103 24 0 chr3 56431387 56431678 -171092900 + AluY SINE Alu 1 298 -13 2215 106 7 7 chr3 56431852 56432155 -171092423 + AluSg SINE Alu 1 303 -7 2144 112 11 0 chr3 56432252 56432567 -171092011 - AluSq SINE Alu 0 318 1 654 191 0 0 chr3 56432724 56432839 -171091739 + AluJo/FLAM SINE Alu 2 116 -186 2451 93 7 0 chr3 56432839 56433141 -171091437 - AluSq SINE Alu -9 304 1 1941 156 20 0 chr3 56433196 56433491 -171091087 - AluSq SINE Alu -12 301 1 994 102 0 0 chr3 56433497 56433624 -171090954 - AluJb SINE Alu -173 139 13 1894 107 9 101 chr3 56433860 56434205 -171090373 - AluSq SINE Alu 0 313 1 885 134 0 47 chr3 56434327 56434461 -171090117 + FLAM_C SINE Alu 1 140 -172 2234 113 0 0 chr3 56434461 56434745 -171089833 + AluSq SINE Alu 1 284 -29 2324 73 0 55 chr3 56434745 56435074 -171089504 + AluY SINE Alu 1 311 0 885 134 0 47 chr3 56435074 56435087 -171089491 + FLAM_C SINE Alu 138 142 -170 195 100 0 0 chr3 56435941 56435971 -171088607 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1627 120 5 0 chr3 56435982 56436198 -171088380 + AluSx SINE Alu 3 219 -93 594 165 18 0 chr3 56436198 56436307 -171088271 + AluSg/x SINE Alu 188 298 -14 2171 118 7 0 chr3 56436380 56436677 -171087901 - AluSp SINE Alu -14 299 1 999 194 17 11 chr3 56437243 56437418 -171087160 - AluJo SINE Alu -24 288 113 339 169 0 40 chr3 56437421 56437496 -171087082 - Alu SINE Alu -258 50 1 22 0 0 0 chr3 56437716 56437738 -171086840 + AT_rich Low_complexity Low_complexity 1 22 0 822 161 0 0 chr3 56437738 56437856 -171086722 - FLAM_C SINE Alu -25 118 1 725 154 13 60 chr3 56438593 56438742 -171085836 + FLAM_C SINE Alu 2 143 0 1094 149 0 11 chr3 56439053 56439234 -171085344 - AluSp SINE Alu -13 300 122 509 155 10 39 chr3 56439447 56439550 -171085028 - FLAM_C SINE Alu -26 117 18 2160 104 11 4 chr3 56439630 56439908 -171084670 + AluSg SINE Alu 1 280 -30 2193 89 38 14 chr3 56442201 56442494 -171082084 + AluSc SINE Alu 1 300 -9 1478 155 4 16 chr3 56442969 56443220 -171081358 - AluSx SINE Alu -9 303 56 2092 108 0 36 chr3 56443443 56443750 -171080828 + AluSx SINE Alu 15 310 -2 2844 28 0 6 chr3 56444066 56444384 -171080194 + AluYb8 SINE Alu 1 316 -2 2055 133 0 27 chr3 56444443 56444744 -171079834 + AluSx SINE Alu 1 293 -19 2525 71 0 0 chr3 56444746 56445043 -171079535 + AluY SINE Alu 1 297 -14 206 211 178 56 chr3 56445169 56445259 -171079319 - L2 LINE L2 -925 2389 2289 202 303 40 30 chr3 56445614 56445713 -171078865 + MER5A DNA MER1_type 44 143 -46 1905 108 101 7 chr3 56446065 56446342 -171078236 - AluSx SINE Alu -9 303 1 1598 179 24 21 chr3 56446831 56446955 -171077623 + AluJo SINE Alu 7 129 -183 2135 113 38 0 chr3 56446955 56447247 -171077331 + AluSg SINE Alu 1 303 -7 1598 179 24 21 chr3 56447247 56447413 -171077165 + AluJo SINE Alu 129 298 -14 854 187 18 24 chr3 56447522 56447688 -171076890 + AluJb SINE Alu 137 301 -11 1491 113 0 61 chr3 56447697 56447762 -171076816 + AluSg/x SINE Alu 80 147 -163 1831 133 4 0 chr3 56447762 56448011 -171076567 + AluSx SINE Alu 49 298 -14 1491 113 0 61 chr3 56448011 56448175 -171076403 + AluSg/x SINE Alu 147 295 -15 181 138 0 0 chr3 56448194 56448223 -171076355 + L3 LINE CR1 327 355 -1222 725 111 0 0 chr3 56449380 56449479 -171075099 + AluS SINE Alu 2 100 -213 1103 121 0 0 chr3 56449596 56449768 -171074810 + AluSg/x SINE Alu 140 311 0 2054 102 7 41 chr3 56450602 56450896 -171073682 - AluSg SINE Alu -21 289 6 883 89 27 34 chr3 56450898 56451044 -171073534 - AluSp SINE Alu -168 145 1 2015 136 7 3 chr3 56451055 56451363 -171073215 - AluJb SINE Alu -3 309 1 22 0 0 0 chr3 56452727 56452749 -171071829 + GC_rich Low_complexity Low_complexity 1 22 0 214 221 94 71 chr3 56452820 56452947 -171071631 + MIR SINE MIR 76 205 -57 2383 82 7 3 chr3 56453268 56453571 -171071007 - AluSq SINE Alu -9 304 1 2360 89 3 9 chr3 56453744 56454059 -171070519 - AluSp SINE Alu 0 313 1 2364 82 10 0 chr3 56454427 56454720 -171069858 + AluSp SINE Alu 1 296 -17 2330 107 0 10 chr3 56454775 56455083 -171069495 + AluSq SINE Alu 1 305 -8 2382 104 0 0 chr3 56455085 56455384 -171069194 + AluSx SINE Alu 1 299 -13 2327 106 3 6 chr3 56456485 56456796 -171067782 - AluSg SINE Alu 0 310 1 2262 132 3 0 chr3 56456805 56457116 -171067462 - AluSx SINE Alu 0 312 1 963 94 0 0 chr3 56457116 56457254 -171067324 + Tigger1 DNA MER2_type 1759 1896 -522 2253 97 10 0 chr3 56457324 56457614 -171066964 - AluSg SINE Alu -17 293 1 2172 109 0 10 chr3 56458145 56458438 -171066140 - AluSg SINE Alu -20 290 1 2373 31 28 11 chr3 56459155 56459442 -171065136 + AluY SINE Alu 15 306 -5 2677 58 0 6 chr3 56460112 56460425 -171064153 + AluY SINE Alu 1 311 0 186 43 0 0 chr3 56461284 56461307 -171063271 + (CCCCG)n Simple_repeat Simple_repeat 1 23 0 180 0 0 0 chr3 56461528 56461548 -171063030 + (CCG)n Simple_repeat Simple_repeat 3 22 0 2060 103 41 7 chr3 56463755 56464045 -171060533 - AluSq SINE Alu -13 300 1 2167 117 7 7 chr3 56464081 56464389 -171060189 + AluSc SINE Alu 1 308 -1 2218 109 14 0 chr3 56464888 56465181 -171059397 + AluSp SINE Alu 3 299 -14 2084 119 7 3 chr3 56465193 56465486 -171059092 + AluSx SINE Alu 1 294 -18 2409 65 14 7 chr3 56466424 56466715 -171057863 + AluY SINE Alu 1 293 -18 1304 203 3 75 chr3 56466740 56466863 -171057715 + AluJo SINE Alu 1 131 -181 2030 139 0 14 chr3 56466863 56467157 -171057421 + AluSx SINE Alu 7 296 -16 1304 203 3 75 chr3 56467157 56467353 -171057225 + AluJo SINE Alu 131 297 -15 2140 111 0 17 chr3 56467355 56467492 -171057086 + AluSx SINE Alu 1 139 -173 2336 91 7 3 chr3 56467492 56467799 -171056779 + AluSp SINE Alu 2 309 -4 1287 120 0 48 chr3 56467740 56467949 -171056629 + AluSg/x SINE Alu 83 316 0 2140 111 0 17 chr3 56467799 56467949 -171056629 + AluSx SINE Alu 139 283 -29 261 0 57 0 chr3 56467949 56467984 -171056594 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 2072 123 40 10 chr3 56467984 56468286 -171056292 + AluSq SINE Alu 1 311 -2 337 253 0 0 chr3 56468502 56468577 -171056001 + AluSp/q SINE Alu 225 299 -4 1679 140 10 41 chr3 56468581 56468791 -171055787 - Tigger1 DNA MER2_type -1154 1264 1066 1810 143 19 62 chr3 56468791 56468931 -171055647 + AluJb SINE Alu 1 145 -167 2135 118 0 14 chr3 56468931 56469241 -171055337 + AluSx SINE Alu 1 306 0 1810 143 19 62 chr3 56469241 56469404 -171055174 + AluJb SINE Alu 145 294 -18 1679 140 10 41 chr3 56469404 56469507 -171055071 - Tigger1 DNA MER2_type -1352 1066 961 918 106 0 0 chr3 56469507 56469620 -171054958 + AluSq/x SINE Alu 1 113 -199 189 26 51 26 chr3 56469638 56469677 -171054901 + (TAAAAA)n Simple_repeat Simple_repeat 2 41 0 1454 180 16 28 chr3 56469690 56469940 -171054638 + AluJb SINE Alu 3 249 -63 435 97 0 42 chr3 56470013 56470085 -171054493 - Tigger1 DNA MER2_type -1738 680 612 668 123 35 9 chr3 56470085 56470199 -171054379 - AluYb8 SINE Alu -13 305 189 * 680 171 0 100 chr3 56470197 56470337 -171054241 + AluJb SINE Alu 89 214 -98 2822 171 38 28 chr3 56470342 56470696 -171053882 - Tigger1 DNA MER2_type -1833 585 221 2160 86 68 0 chr3 56470696 56470975 -171053603 + AluSp SINE Alu 1 298 -15 2822 171 38 28 chr3 56470975 56471199 -171053379 - Tigger1 DNA MER2_type -2197 221 1 1079 179 68 5 chr3 56471415 56471622 -171052956 + AluJo SINE Alu 1 220 -92 957 101 0 0 chr3 56471638 56471757 -171052821 - AluSq/x SINE Alu -194 119 1 482 163 0 12 chr3 56472349 56472435 -171052143 + AluJo SINE Alu 215 299 -13 2055 156 0 3 chr3 56473492 56473799 -171050779 + AluSx SINE Alu 1 306 -6 601 266 14 0 chr3 56474353 56474492 -171050086 + FRAM SINE Alu 6 146 -30 23 0 0 0 chr3 56474500 56474523 -171050055 + AT_rich Low_complexity Low_complexity 1 23 0 2189 136 7 0 chr3 56474523 56474832 -171049746 + AluSx SINE Alu 1 311 -1 2459 103 0 3 chr3 56475202 56475514 -171049064 - AluSx SINE Alu -1 311 1 895 200 11 11 chr3 56475515 56475690 -171048888 + AluJb SINE Alu 120 294 -18 1994 140 0 0 chr3 56475944 56476230 -171048348 + AluSx SINE Alu 1 286 -26 219 299 65 56 chr3 56476323 56476430 -171048148 + MIR SINE MIR 50 157 -105 2418 91 0 3 chr3 56476684 56476993 -171047585 + AluY SINE Alu 1 308 -3 1809 130 70 4 chr3 56477170 56477440 -171047138 - AluSx SINE Alu -19 293 6 30 45 0 0 chr3 56477496 56477540 -171047038 + AT_rich Low_complexity Low_complexity 1 44 0 2034 135 0 10 chr3 56477540 56477836 -171046742 - AluSx SINE Alu -19 293 1 2437 80 0 0 chr3 56478319 56478620 -171045958 - AluY SINE Alu 0 311 11 1977 131 3 42 chr3 56478797 56478966 -171045612 - AluSq SINE Alu -3 300 147 2147 89 58 10 chr3 56478966 56479121 -171045457 - AluSp SINE Alu -8 305 159 1712 106 45 103 chr3 56479121 56479432 -171045146 - AluSg SINE Alu -17 293 1 2147 89 58 10 chr3 56479432 56479567 -171045011 - AluSp SINE Alu -154 159 1 1977 131 3 42 chr3 56479567 56479709 -171044869 - AluSq SINE Alu -156 147 1 2140 86 79 17 chr3 56481384 56481676 -171042902 + AluSg SINE Alu 1 310 0 2424 93 0 0 chr3 56481688 56481989 -171042589 + AluSq SINE Alu 7 307 -6 755 157 15 22 chr3 56482053 56482187 -171042391 + FLAM_C SINE Alu 1 133 0 250 206 32 0 chr3 56482192 56482255 -171042323 - L2 LINE L2 -1 3312 3248 250 258 15 30 chr3 56482288 56482354 -171042224 - MER21A LTR ERV1 -195 736 672 * 644 223 0 14 chr3 56482342 56482481 -171042097 - MER77 LTR ERV1 -9 596 460 425 146 34 11 chr3 56482584 56482673 -171041905 + AluSp/q SINE Alu 218 308 -5 892 176 72 41 chr3 56483182 56483403 -171041175 - MER46A DNA MER2_type -2 234 7 2461 79 0 19 chr3 56483496 56483812 -171040766 + AluY SINE Alu 1 310 -1 2302 87 0 0 chr3 56483814 56484118 -171040460 + AluSg SINE Alu 3 306 0 965 164 44 0 chr3 56484118 56484277 -171040301 + AluJb SINE Alu 132 297 -15 2241 119 3 0 chr3 56484821 56485123 -171039455 + AluSx SINE Alu 1 303 -9 744 219 27 0 chr3 56485200 56485383 -171039195 + MER3 DNA MER1_type 14 201 -8 271 170 38 0 chr3 56485346 56485399 -171039179 - MER3 DNA MER1_type -117 92 38 * 2341 108 7 0 chr3 56485409 56485715 -171038863 - AluSx SINE Alu -4 308 1 908 197 39 0 chr3 56485715 56485893 -171038685 - MER5A DNA MER1_type -4 185 1 789 156 0 44 chr3 56486669 56486804 -171037774 - FLAM_C SINE Alu 0 133 5 2287 108 0 13 chr3 56487153 56487468 -171037110 - AluSx SINE Alu -1 311 1 1526 178 40 7 chr3 56487634 56487909 -171036669 + AluJb SINE Alu 1 284 -28 180 123 18 35 chr3 56487916 56487973 -171036605 + (TA)n Simple_repeat Simple_repeat 2 57 0 1910 116 44 38 chr3 56488617 56488910 -171035668 - AluSx SINE Alu -17 295 1 2108 118 3 34 chr3 56489394 56489715 -171034863 + AluSx SINE Alu 1 311 -1 2235 83 3 51 chr3 56489729 56490041 -171034537 + AluSp SINE Alu 1 297 -16 981 181 29 0 chr3 56490041 56490212 -171034366 + AluJb SINE Alu 134 309 -3 2235 107 3 3 chr3 56491225 56491523 -171033055 - AluSq SINE Alu -15 298 1 2413 61 20 0 chr3 56492402 56492697 -171031881 + AluY SINE Alu 1 301 -10 202 224 138 0 chr3 56492814 56492872 -171031706 - MIR SINE MIR -119 143 78 2198 141 0 0 chr3 56493005 56493317 -171031261 + AluSx SINE Alu 1 312 0 1202 192 77 35 chr3 56493478 56493765 -171030813 + AluJo SINE Alu 1 299 -13 244 229 14 0 chr3 56493797 56493867 -171030711 + A-rich Low_complexity Low_complexity 5 75 0 1796 82 5 0 chr3 56494012 56494232 -171030346 + AluY SINE Alu 1 221 -90 2213 119 6 16 chr3 56494380 56494692 -171029886 + AluSx SINE Alu 1 309 -3 1093 139 0 0 chr3 56494777 56494928 -171029650 + AluSx SINE Alu 60 210 -102 2006 127 41 3 chr3 56494932 56495224 -171029354 + AluSx SINE Alu 1 303 -9 433 189 115 8 chr3 56495817 56495939 -171028639 + L1 LINE L1 4191 4325 -1821 2475 81 0 0 chr3 56495941 56496250 -171028328 + AluY SINE Alu 1 309 -2 2354 88 3 0 chr3 56496426 56496720 -171027858 + AluSp SINE Alu 1 295 -18 1399 165 16 114 chr3 56496728 56496890 -171027688 + AluJo SINE Alu 1 119 -183 1730 176 10 13 chr3 56496890 56497203 -171027375 + AluJb SINE Alu 1 312 0 1399 165 16 114 chr3 56497203 56497356 -171027222 + AluJo SINE Alu 119 285 -17 263 176 20 0 chr3 56497379 56497430 -171027148 - MLT1F1 LTR MaLR -103 464 413 2141 121 0 63 chr3 56497446 56497778 -171026800 + AluSq SINE Alu 1 311 -2 243 139 0 56 chr3 56497799 56497820 -171026758 + (TCTA)n Simple_repeat Simple_repeat 4 25 -46 2046 143 0 7 chr3 56497820 56498120 -171026458 - AluJb SINE Alu -6 306 9 243 139 0 56 chr3 56498120 56498170 -171026408 + (TCTA)n Simple_repeat Simple_repeat 25 71 0 1575 171 31 21 chr3 56498189 56498475 -171026103 - AluJb SINE Alu -23 289 1 422 98 0 61 chr3 56498504 56498586 -171025992 + L1MB8 LINE L1 5270 5346 -800 * 2197 141 49 104 chr3 56498583 56499098 -171025480 + L1MB8 LINE L1 5617 6098 -80 1826 165 0 7 chr3 56499098 56499395 -171025183 - AluJb SINE Alu -17 295 1 2197 141 49 104 chr3 56499395 56499468 -171025110 + L1MB8 LINE L1 6098 6173 -5 1062 277 104 28 chr3 56499527 56500000 -171024578 + MLT1J LTR MaLR 3 511 0 1626 100 141 8 chr3 56500005 56500301 -171024277 + AluSg1 SINE Alu 1 329 0 2262 35 0 4 chr3 56500582 56500840 -171023738 + AluY SINE Alu 39 295 -16 2454 97 0 0 chr3 56500850 56501160 -171023418 + AluSg SINE Alu 1 310 0 646 136 195 0 chr3 56501166 56501284 -171023294 + FLAM_C SINE Alu 2 142 -1 2327 74 0 0 chr3 56503563 56503870 -171020708 - AluY SINE Alu 0 307 1 2255 117 10 0 chr3 56503881 56504188 -171020390 - AluY SINE Alu -1 310 1 355 297 130 42 chr3 56504201 56504393 -171020185 - MIR SINE MIR -46 216 8 189 0 0 0 chr3 56504502 56504523 -171020055 + (TG)n Simple_repeat Simple_repeat 1 21 0 2576 74 0 0 chr3 56504920 56505230 -171019348 - AluY SINE Alu -1 310 1 2233 98 3 33 chr3 56505954 56506261 -171018317 + AluSx SINE Alu 2 299 -13 1359 124 0 73 chr3 56506549 56506750 -171017828 - AluSg/x SINE Alu -12 300 117 210 37 0 0 chr3 56506750 56506777 -171017801 + (TTTG)n Simple_repeat Simple_repeat 1 27 0 1359 124 0 73 chr3 56506777 56506808 -171017770 - AluSg/x SINE Alu -195 117 85 434 127 16 0 chr3 56506808 56506871 -171017707 - AluSq SINE Alu -63 250 187 * 496 94 0 0 chr3 56506866 56506930 -171017648 - AluSq SINE Alu -172 141 78 1328 146 9 9 chr3 56506930 56507142 -171017436 - AluSx SINE Alu -100 212 1 1962 106 44 7 chr3 56507181 56507481 -171017097 - AluSx SINE Alu 0 310 1 1131 181 0 20 chr3 56507931 56508130 -171016448 - AluJo SINE Alu -11 301 107 2388 63 21 0 chr3 56508131 56508416 -171016162 + AluY SINE Alu 1 291 -20 462 228 18 26 chr3 56508420 56508534 -171016044 - AluJb SINE Alu -35 277 165 232 194 0 0 chr3 56508542 56508578 -171016000 + G-rich Low_complexity Low_complexity 1 36 0 2311 82 14 0 chr3 56508823 56509104 -171015474 + AluY SINE Alu 7 291 -20 698 243 7 0 chr3 56509108 56509248 -171015330 - AluJb SINE Alu -35 277 137 2140 135 3 10 chr3 56509269 56509580 -171014998 + AluSx SINE Alu 4 312 0 1636 176 7 0 chr3 56509660 56509933 -171014645 - AluSx SINE Alu -22 290 16 1498 169 0 59 chr3 56509985 56510257 -171014321 - AluJb SINE Alu -56 256 1 369 123 0 0 chr3 56510267 56510324 -171014254 - AluSq SINE Alu -5 296 240 1378 95 0 0 chr3 56510324 56510492 -171014086 - AluSq SINE Alu -145 168 1 297 295 113 0 chr3 56510681 56510815 -171013763 + MIR SINE MIR 85 245 -17 1766 163 44 3 chr3 56510958 56511252 -171013326 - AluJb SINE Alu -5 307 2 2298 106 0 0 chr3 56511375 56511668 -171012910 - AluSq SINE Alu 0 313 21 194 327 18 0 chr3 56512177 56512232 -171012346 + L2 LINE L2 3201 3256 -16 2111 121 3 0 chr3 56512309 56512599 -171011979 + AluSx SINE Alu 1 291 -21 2210 117 0 3 chr3 56512627 56512926 -171011652 + AluSg SINE Alu 1 298 -12 2288 95 0 7 chr3 56512929 56513213 -171011365 + AluSx SINE Alu 1 282 -30 459 0 0 0 chr3 56513213 56513264 -171011314 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 316 39 20 20 chr3 56513286 56513337 -171011241 + (TGGA)n Simple_repeat Simple_repeat 2 52 0 194 393 41 0 chr3 56513501 56513623 -171010955 + MIR SINE MIR 84 210 -52 774 146 0 0 chr3 56514523 56514633 -171009945 - AluJo SINE Alu -118 194 85 748 235 134 8 chr3 56514635 56514903 -171009675 - L1MEc LINE L1 -6046 350 49 777 144 64 0 chr3 56516627 56516752 -171007826 + AluJo SINE Alu 2 134 -178 2424 108 0 0 chr3 56516767 56517072 -171007506 + AluSc SINE Alu 1 305 -4 2092 140 3 0 chr3 56517074 56517374 -171007204 + AluSx SINE Alu 1 301 -11 2290 97 0 0 chr3 56517632 56517940 -171006638 - AluSc SINE Alu -1 308 1 1282 98 0 0 chr3 56517940 56518113 -171006465 - AluSp SINE Alu -14 299 127 393 136 0 0 chr3 56518113 56518179 -171006399 + (TG)n Simple_repeat Simple_repeat 2 67 0 2306 64 3 3 chr3 56518201 56518496 -171006082 - AluY SINE Alu -16 295 1 1028 103 0 0 chr3 56518496 56518632 -171005946 - AluSq/x SINE Alu -177 136 1 2432 64 3 6 chr3 56519079 56519391 -171005187 - AluY SINE Alu 0 311 1 1954 117 0 7 chr3 56519400 56519691 -171004887 - AluSx SINE Alu -23 289 1 248 286 220 0 chr3 56519909 56520000 -171004578 - MIR SINE MIR -76 186 76 2699 26 0 0 chr3 56523841 56524151 -171000427 + AluY SINE Alu 1 310 -1 1733 109 109 0 chr3 56524287 56524552 -171000026 + AluSx SINE Alu 2 295 -17 1943 128 3 0 chr3 56524553 56524843 -170999735 + AluSq SINE Alu 2 292 -21 2341 84 0 3 chr3 56524845 56525156 -170999422 + AluSx SINE Alu 1 310 -2 943 114 0 0 chr3 56525176 56525307 -170999271 + FLAM_C SINE Alu 1 131 -2 2195 98 0 3 chr3 56525717 56526014 -170998564 + AluSg SINE Alu 1 296 -14 624 213 15 29 chr3 56526023 56526159 -170998419 + AluJo SINE Alu 85 218 -94 216 97 0 0 chr3 56526274 56526305 -170998273 + (A)n Simple_repeat Simple_repeat 1 31 0 2260 85 0 0 chr3 56526927 56527220 -170997358 + AluSg SINE Alu 1 293 -17 2070 106 3 0 chr3 56528323 56528641 -170995937 - AluSx SINE Alu 0 319 1 228 232 58 0 chr3 56528943 56529012 -170995566 - L1ME4a LINE L1 -2 6119 6047 2169 187 140 30 chr3 56529120 56529423 -170995155 - L1MD3 LINE L1 -14 7981 7713 2028 121 3 3 chr3 56529423 56529720 -170994858 - AluSx SINE Alu -15 297 1 2169 187 140 30 chr3 56529720 56529987 -170994591 - L1MD3 LINE L1 -282 7713 7348 573 117 87 0 chr3 56530674 56530777 -170993801 + HY1 scRNA scRNA 1 112 0 556 135 48 10 chr3 56530788 56530892 -170993686 + HY1 scRNA scRNA 5 112 0 998 165 0 16 chr3 56530998 56531180 -170993398 - AluJb SINE Alu 0 312 134 2021 122 3 0 chr3 56531187 56531475 -170993103 - AluSx SINE Alu -23 289 1 190 257 0 86 chr3 56532165 56532235 -170992343 + L3b LINE CR1 1457 1520 -63 729 194 0 8 chr3 56532447 56532581 -170991997 + FLAM_A SINE Alu 1 133 0 752 107 0 36 chr3 56532889 56533001 -170991577 + FLAM_C SINE Alu 21 128 -15 251 207 0 117 chr3 56533070 56533181 -170991397 + L1ME4a LINE L1 5957 6054 -67 1227 109 0 0 chr3 56533188 56533362 -170991216 - AluSg/x SINE Alu -2 308 135 951 215 21 0 chr3 56533593 56533784 -170990794 + AluJo SINE Alu 1 195 -117 2011 107 4 0 chr3 56533786 56534100 -170990478 + AluSq SINE Alu 9 323 0 2169 93 10 0 chr3 56534100 56534391 -170990187 + AluSx SINE Alu 1 294 -18 219 139 0 0 chr3 56534403 56534439 -170990139 + (TC)n Simple_repeat Simple_repeat 1 36 0 357 75 0 0 chr3 56534439 56534492 -170990086 + (TG)n Simple_repeat Simple_repeat 2 54 0 1882 118 0 24 chr3 56535360 56535497 -170989081 + AluSg SINE Alu 1 140 -173 2183 103 3 3 chr3 56535497 56535808 -170988770 + AluSq SINE Alu 1 311 -2 1882 118 0 24 chr3 56535808 56535990 -170988588 + AluSg SINE Alu 140 313 0 2229 91 7 0 chr3 56536060 56536357 -170988221 + AluSp SINE Alu 1 299 -14 602 99 0 0 chr3 56536357 56536438 -170988140 + AluJb SINE Alu 61 141 -171 2106 115 7 0 chr3 56536441 56536737 -170987841 + AluSc SINE Alu 1 298 -11 1698 129 0 0 chr3 56536749 56536990 -170987588 + AluSq SINE Alu 1 241 -72 1113 182 147 72 chr3 56536990 56537364 -170987214 + LTR4 LTR ERV1 1 402 -194 * 1403 177 9 78 chr3 56537340 56537662 -170986916 + LTR4 LTR ERV1 297 596 0 291 125 0 42 chr3 56537662 56537740 -170986838 + AluSq SINE Alu 236 311 0 1892 156 3 13 chr3 56537817 56538132 -170986446 + AluSx SINE Alu 1 312 0 23 86 0 0 chr3 56538312 56538370 -170986208 + AT_rich Low_complexity Low_complexity 1 58 0 2086 118 0 0 chr3 56538649 56538953 -170985625 - AluSg1 SINE Alu -5 304 1 1262 183 116 8 chr3 56538953 56539221 -170985357 - AluSg SINE Alu -13 297 1 2157 88 10 7 chr3 56539845 56540141 -170984437 + AluY SINE Alu 1 297 -14 2145 97 3 13 chr3 56540225 56540524 -170984054 + AluSg SINE Alu 1 296 -14 717 183 22 78 chr3 56540714 56540894 -170983684 + MLT1A2 LTR MaLR 1 170 -204 1769 124 16 35 chr3 56540895 56541210 -170983368 + AluSx SINE Alu 3 311 -1 2772 106 8 5 chr3 56541294 56541682 -170982896 - MER9 LTR ERVK -122 389 1 2269 116 6 4 chr3 56541682 56542019 -170982559 - HERVK9 LTR ERVK 0 5916 4922 30922 89 9 1 chr3 56542061 56546114 -170978464 - HERVK9 LTR ERVK -282 5634 1549 4991 86 152 1 chr3 56546116 56546834 -170977744 + LTR12 LTR ERV1 1 826 0 15106 102 15 13 chr3 56546858 56549849 -170974729 + HERV9 LTR ERV1 58 3139 -5260 20357 83 4 11 chr3 56549856 56549892 -170974686 + HERV9 LTR ERV1 4080 4115 -4284 2239 91 3 0 chr3 56549892 56550189 -170974389 - AluSg SINE Alu -12 298 1 20357 83 4 11 chr3 56550189 56551670 -170972908 + HERV9 LTR ERV1 4115 5569 -2830 2300 68 3 0 chr3 56551670 56551962 -170972616 - AluY SINE Alu -18 293 1 20357 83 4 11 chr3 56551962 56553129 -170971449 + HERV9 LTR ERV1 5569 6744 -1655 5265 113 3 0 chr3 56553127 56553862 -170970716 + HERV9 LTR ERV1 7663 8399 0 * 4082 71 123 174 chr3 56553862 56554489 -170970089 + LTR12 LTR ERV1 1 573 -253 2114 108 7 0 chr3 56554489 56554786 -170969792 - AluY SINE Alu -12 299 1 4082 71 123 174 chr3 56554786 56555028 -170969550 + LTR12 LTR ERV1 573 826 0 951 102 0 0 chr3 56555028 56555155 -170969423 - HERVK9 LTR ERVK -4366 1550 1424 * 4006 93 18 21 chr3 56555153 56555723 -170968855 - HERVK9 LTR ERVK -5348 568 1 3410 118 10 8 chr3 56555723 56556233 -170968345 - MER9 LTR ERVK 0 511 1 788 100 0 0 chr3 56556233 56556333 -170968245 - AluSq/x SINE Alu -199 113 14 1018 144 101 29 chr3 56556338 56556522 -170968056 - AluJb SINE Alu -9 303 101 3708 97 41 64 chr3 56556522 56556693 -170967885 + LTR18B LTR ERVL 1 174 -440 2069 122 7 3 chr3 56556693 56556996 -170967582 + AluSg SINE Alu 1 304 -6 3708 97 41 64 chr3 56556996 56557452 -170967126 + LTR18B LTR ERVL 174 614 0 1018 144 101 29 chr3 56557452 56557475 -170967103 - AluJb SINE Alu -211 101 81 1824 113 0 0 chr3 56557476 56557715 -170966863 + MER1A DNA MER1_type 137 375 -154 6866 58 18 0 chr3 56557717 56558863 -170965715 - L1PA6 LINE L1 0 6154 5007 1372 121 0 5 chr3 56558863 56559062 -170965516 - AluSq SINE Alu -115 198 1 1007 143 25 0 chr3 56559062 56559223 -170965355 + MER1A DNA MER1_type 365 529 0 2208 142 132 2 chr3 56559426 56559834 -170964744 + LOR1b LTR ERV1 1 461 0 1919 133 10 3 chr3 56560024 56560324 -170964254 + AluSx SINE Alu 1 302 -10 289 180 48 93 chr3 56560324 56560433 -170964145 + L1 LINE L1 5054 5157 -989 2220 112 0 0 chr3 56560434 56560739 -170963839 + AluSq SINE Alu 2 306 -7 234 0 0 0 chr3 56560739 56560765 -170963813 + (TA)n Simple_repeat Simple_repeat 2 27 0 7938 112 217 25 chr3 56561378 56562801 -170961777 + pTR5 LTR ERV1 743 2438 0 1878 140 0 29 chr3 56562840 56563148 -170961430 - AluSx SINE Alu -13 299 1 2435 63 0 7 chr3 56563189 56563492 -170961086 - AluY SINE Alu -10 301 1 1056 116 79 0 chr3 56563731 56563895 -170960683 - AluSq SINE Alu -12 301 125 364 236 12 36 chr3 56563912 56564065 -170960513 + L1M4 LINE L1 4349 4499 -1647 2277 70 0 3 chr3 56564065 56564366 -170960212 + AluY SINE Alu 1 300 -11 364 236 12 36 chr3 56564366 56564377 -170960201 + L1M4 LINE L1 4499 4509 -1637 2112 107 0 7 chr3 56564377 56564675 -170959903 + AluSc SINE Alu 1 296 -13 2069 102 3 7 chr3 56564675 56564969 -170959609 + AluSx SINE Alu 1 294 -18 809 178 0 0 chr3 56564969 56565104 -170959474 + AluJo/FRAM SINE Alu 134 268 -44 23 0 0 0 chr3 56565143 56565166 -170959412 + AT_rich Low_complexity Low_complexity 1 23 0 527 215 0 0 chr3 56565166 56565259 -170959319 + AluJo SINE Alu 123 215 -97 876 64 0 0 chr3 56965262 56965409 -170559169 + AluY SINE Alu 173 319 0 312 241 0 0 chr3 56965477 56965556 -170559022 + CT-rich Low_complexity Low_complexity 1 79 0 1673 168 21 0 chr3 56965556 56965847 -170558731 - AluJb SINE Alu -2 310 14 1036 109 0 69 chr3 56965850 56966025 -170558553 - AluSg/x SINE Alu -13 299 137 1615 107 16 8 chr3 56966090 56966334 -170558244 - AluSq SINE Alu -8 305 60 1605 110 0 0 chr3 56966434 56966653 -170557925 - AluSg SINE Alu -91 219 1 1298 263 198 6 chr3 56966670 56967156 -170557422 - L2 LINE L2 -952 2362 1784 279 253 241 59 chr3 56967181 56967428 -170557150 + MLT1J2 LTR MaLR 68 389 -61 1930 87 17 27 chr3 56967428 56967727 -170556851 + AluSx SINE Alu 1 296 -16 279 253 241 59 chr3 56967727 56967803 -170556775 + MLT1J2 LTR MaLR 389 450 0 250 267 27 0 chr3 56967842 56967917 -170556661 - L2 LINE L2 -1538 1776 1700 406 163 81 0 chr3 56967918 56968004 -170556574 - L1ME3A LINE L1 -1 6169 6077 1596 179 3 0 chr3 56968235 56968520 -170556058 - AluJo SINE Alu -26 286 1 1380 173 83 4 chr3 56968763 56969041 -170555537 + AluSx SINE Alu 1 300 -12 703 93 0 0 chr3 56969370 56969467 -170555111 + AluS SINE Alu 2 98 -214 1589 118 4 4 chr3 56969567 56969796 -170554782 - AluSg SINE Alu -81 229 1 26 30 0 0 chr3 56969827 56969860 -170554718 + AT_rich Low_complexity Low_complexity 1 33 0 1892 122 41 3 chr3 56970052 56970346 -170554232 - AluSc SINE Alu -4 305 1 911 86 47 0 chr3 56970346 56970474 -170554104 - AluY SINE Alu -177 134 1 30 0 0 0 chr3 56970474 56970504 -170554074 + AT_rich Low_complexity Low_complexity 1 30 0 1152 169 6 0 chr3 56970504 56970687 -170553891 - AluSx SINE Alu -126 186 3 418 138 15 0 chr3 56971142 56971207 -170553371 + AluJ/FLAM SINE Alu 2 67 -245 1077 119 6 0 chr3 56971307 56971467 -170553111 - AluSg/x SINE Alu -30 282 122 1869 159 0 19 chr3 56971950 56972258 -170552320 - AluSx SINE Alu -7 305 4 1026 219 88 0 chr3 56972498 56972703 -170551875 + MER58A DNA MER1_type 1 223 -1 1729 136 3 30 chr3 56973539 56973841 -170550737 - AluSg SINE Alu -14 296 3 701 184 0 46 chr3 56973842 56973930 -170550648 - L1M4c LINE L1 -4640 2006 1926 2417 53 0 35 chr3 56973930 56974249 -170550329 - AluY SINE Alu -3 308 1 701 184 0 46 chr3 56974249 56974312 -170550266 - L1M4c LINE L1 -4720 1926 1862 2259 83 0 3 chr3 56974322 56974622 -170549956 - AluSx SINE Alu -13 299 1 253 236 45 11 chr3 56974623 56974712 -170549866 - L1M4c LINE L1 -5753 893 802 387 300 96 23 chr3 56974999 56975219 -170549359 - L1M4c LINE L1 -6300 242 7 789 172 6 19 chr3 56975219 56975376 -170549202 - L1M4 LINE L1 -934 5212 5058 330 357 32 8 chr3 56975378 56975504 -170549074 - MLT1K LTR MaLR -303 285 157 1048 153 21 89 chr3 56975662 56975842 -170548736 - AluJo SINE Alu -11 301 139 1820 109 4 0 chr3 56975842 56976099 -170548479 - AluSx SINE Alu -24 288 31 1048 153 21 89 chr3 56976099 56976154 -170548424 - AluJo SINE Alu -173 139 82 402 186 106 0 chr3 56976274 56976387 -170548191 - L1M4c LINE L1 -3951 2433 2309 1313 149 60 53 chr3 56976405 56976686 -170547892 - AluJo SINE Alu -18 294 12 2194 89 13 0 chr3 56976705 56977007 -170547571 - AluSq SINE Alu -7 306 1 2219 77 3 0 chr3 56977012 56977340 -170547238 - AluSp SINE Alu 0 329 1 1376 189 62 34 chr3 56977354 56977645 -170546933 - AluJo SINE Alu 0 302 4 560 175 22 88 chr3 56977686 56977823 -170546755 - FLAM_A SINE Alu -1 132 5 1280 180 29 74 chr3 56977870 56978203 -170546375 - L1M4c LINE L1 -4151 2233 1823 1618 132 0 0 chr3 56978203 56978446 -170546132 - AluSx SINE Alu -8 304 62 1280 180 29 74 chr3 56978446 56978496 -170546082 - L1M4c LINE L1 -4561 1823 1772 1439 160 51 7 chr3 56978614 56978889 -170545689 + L1MB3 LINE L1 5726 6012 -171 1363 197 47 23 chr3 56978892 56979067 -170545511 - AluJb SINE Alu -6 306 120 228 67 0 0 chr3 56979067 56979097 -170545481 + (TG)n Simple_repeat Simple_repeat 1 30 0 1363 197 47 23 chr3 56979097 56979220 -170545358 - AluJb SINE Alu -192 120 1 1382 167 84 8 chr3 56979235 56979382 -170545196 - AluSx SINE Alu 0 321 187 207 0 0 0 chr3 56979382 56979405 -170545173 + (TTA)n Simple_repeat Simple_repeat 2 24 0 2046 126 0 0 chr3 56979405 56979706 -170544872 - AluSg SINE Alu -9 301 1 1382 167 84 8 chr3 56979706 56979721 -170544857 - AluSx SINE Alu -134 187 175 2075 106 14 3 chr3 56979721 56980014 -170544564 - AluSc SINE Alu -13 296 1 1382 167 84 8 chr3 56980014 56980150 -170544428 - AluSx SINE Alu -146 175 1 530 201 6 17 chr3 56980162 56980184 -170544394 - L1M4 LINE L1 -825 5321 5300 2195 84 10 0 chr3 56980184 56980482 -170544096 - AluSp SINE Alu -12 301 1 530 201 6 17 chr3 56980482 56980599 -170543979 - L1M4 LINE L1 -846 5300 5192 681 189 0 8 chr3 56980610 56980732 -170543846 - FLAM_C SINE Alu -22 121 1 941 198 0 0 chr3 56980736 56980908 -170543670 - AluJo/FRAM SINE Alu -7 305 134 2114 100 0 20 chr3 56980908 56981209 -170543369 - AluSg SINE Alu -15 295 1 1938 112 24 20 chr3 56981209 56981505 -170543073 - AluSx SINE Alu -15 297 1 1395 192 4 14 chr3 56981536 56981812 -170542766 + AluSx SINE Alu 1 273 -39 2338 53 0 26 chr3 56981912 56982215 -170542363 + AluY SINE Alu 4 298 -13 2435 146 63 45 chr3 56982215 56982316 -170542262 - L1MB4 LINE L1 -57 6123 6025 1595 131 120 0 chr3 56982316 56982583 -170541995 + AluSx SINE Alu 5 303 -9 2435 146 63 45 chr3 56982583 56982987 -170541591 - L1MB4 LINE L1 -155 6025 5609 1681 153 16 36 chr3 56983004 56983311 -170541267 - AluJo SINE Alu -11 301 1 806 174 0 0 chr3 56983316 56983454 -170541124 - FLAM_C SINE Alu -3 140 3 806 175 133 39 chr3 56983462 56983748 -170540830 - L1MB4 LINE L1 -564 5616 5304 * 2986 147 16 36 chr3 56983716 56984177 -170540401 - L1MB3 LINE L1 -38 6145 5695 2134 99 7 3 chr3 56984177 56984480 -170540098 - AluSx SINE Alu -8 304 1 2986 147 16 36 chr3 56984480 56984576 -170540002 - L1MB3 LINE L1 -488 5695 5599 2320 59 3 10 chr3 56984576 56984879 -170539699 - AluY SINE Alu -10 301 1 1136 190 0 5 chr3 56984881 56985097 -170539481 - AluJo SINE Alu -11 301 87 456 158 13 0 chr3 56985106 56985182 -170539396 - L1MB3 LINE L1 -569 5599 5523 464 95 135 14 chr3 56985183 56985257 -170539321 + MLT1B LTR MaLR 1 83 -307 2226 84 3 3 chr3 56986126 56986425 -170538153 + AluSc SINE Alu 1 299 -10 24 0 0 0 chr3 56986426 56986450 -170538128 + AT_rich Low_complexity Low_complexity 1 24 0 2429 57 0 0 chr3 56987399 56987698 -170536880 - AluY SINE Alu -12 299 1 241 238 29 29 chr3 56988730 56988835 -170535743 + HAL1 LINE L1 979 1083 -1424 2065 130 3 0 chr3 56989032 56989339 -170535239 + AluSx SINE Alu 1 308 -4 1281 51 6 23 chr3 56991958 56992133 -170532445 - AluY SINE Alu -3 308 137 2099 110 0 0 chr3 56992199 56992509 -170532069 - AluSg SINE Alu 0 310 1 208 143 0 0 chr3 56992511 56992546 -170532032 + (T)n Simple_repeat Simple_repeat 1 35 0 310 193 182 0 chr3 56992613 56992701 -170531877 - L1MC3 LINE L1 -1111 6674 6571 863 183 0 26 chr3 56992799 56992952 -170531626 - AluJo/FRAM SINE Alu -17 285 137 1397 202 0 39 chr3 56992955 56993127 -170531451 - AluJb SINE Alu -12 300 144 1634 200 0 0 chr3 56993127 56993427 -170531151 - AluSx SINE Alu -12 300 1 1397 202 0 39 chr3 56993427 56993561 -170531017 - AluJb SINE Alu -168 144 6 2481 11 0 0 chr3 56993938 56994215 -170530363 + AluYb8 SINE Alu 29 305 -13 363 326 149 27 chr3 56994520 56994888 -170529690 + L2 LINE L2 2857 3269 -3 305 214 30 0 chr3 56995532 56995626 -170528952 + MIR SINE MIR 36 136 -72 2168 91 0 39 chr3 56995768 56995911 -170528667 + AluSg SINE Alu 1 148 -162 2500 47 0 0 chr3 56995911 56996210 -170528368 + AluY SINE Alu 1 299 -12 2168 91 0 39 chr3 56996210 56996375 -170528203 + AluSg SINE Alu 148 297 -13 398 174 43 0 chr3 56996514 56996609 -170527969 - MIR SINE MIR -58 204 104 789 292 76 27 chr3 56996635 56996936 -170527642 + LTR16A LTR ERVL 16 331 -119 294 243 117 9 chr3 56997528 56997639 -170526939 - MIR SINE MIR -65 143 21 2390 51 0 3 chr3 56998487 56998783 -170525795 - AluY SINE Alu -16 295 1 246 143 0 0 chr3 56999163 56999198 -170525380 - Alu SINE Alu -265 35 1 1355 188 21 115 chr3 56999284 56999668 -170524910 - MER7A DNA MER2_type 0 346 1 2283 233 62 58 chr3 57000064 57000769 -170523809 - MER21B LTR ERV1 -155 708 1 1552 199 3 3 chr3 57001070 57001399 -170523179 - AluJb SINE Alu 0 338 10 233 387 48 0 chr3 57001668 57001792 -170522786 - MIR SINE MIR -66 196 67 239 203 68 17 chr3 57001865 57001924 -170522654 - L2 LINE L2 -37 3235 3174 2022 125 0 0 chr3 57002526 57002813 -170521765 + AluSx SINE Alu 11 297 -15 1027 117 0 0 chr3 57002968 57003113 -170521465 + AluSp SINE Alu 152 296 -17 1541 195 17 14 chr3 57003223 57003520 -170521058 - AluJb SINE Alu -14 298 1 1268 118 16 0 chr3 57003711 57003897 -170520681 - AluSg/x SINE Alu -38 274 86 809 241 10 5 chr3 57004345 57004540 -170520038 - L1MD2 LINE L1 -12 6347 6152 273 247 27 0 chr3 57004639 57004712 -170519866 + L1ME LINE L1 5704 5778 -343 272 250 42 14 chr3 57004719 57004791 -170519787 - MIR SINE MIR -13 249 176 258 269 235 27 chr3 57004813 57004962 -170519616 - L2 LINE L2 -22 3291 3112 1846 135 4 0 chr3 57004997 57005278 -170519300 - AluSx SINE Alu -30 282 1 910 152 0 0 chr3 57005280 57005425 -170519153 - AluJb SINE Alu -16 296 152 328 310 26 9 chr3 57005442 57005555 -170519023 - L2 LINE L2 -244 3069 2955 235 274 239 0 chr3 57005613 57005726 -170518852 - MIR SINE MIR -121 141 2 2284 98 0 0 chr3 57005727 57006032 -170518546 - AluSx SINE Alu -6 306 2 243 0 0 0 chr3 57006034 57006061 -170518517 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2026 113 0 0 chr3 57006061 57006344 -170518234 - AluY SINE Alu -28 283 1 1227 159 78 78 chr3 57006378 57006521 -170518057 - AluJo SINE Alu -13 299 157 2388 64 0 3 chr3 57006521 57006819 -170517759 - AluY SINE Alu -14 297 1 2252 109 0 0 chr3 57006821 57007133 -170517445 - AluSx SINE Alu 0 312 1 1227 159 78 78 chr3 57007133 57007281 -170517297 - AluJo SINE Alu -155 157 5 24 0 0 0 chr3 57007798 57007822 -170516756 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr3 57008220 57008252 -170516326 + AT_rich Low_complexity Low_complexity 1 32 0 662 365 21 3 chr3 57009160 57009442 -170515136 + L2 LINE L2 2672 2958 -356 764 226 0 0 chr3 57009982 57010115 -170514463 + FLAM_A SINE Alu 1 133 0 1701 170 0 0 chr3 57010152 57010435 -170514143 - AluJo SINE Alu -17 295 13 241 252 139 35 chr3 57010684 57010799 -170513779 - MER46C DNA MER2_type 0 338 212 427 201 180 7 chr3 57010829 57010968 -170513610 - MER46C DNA MER2_type -174 164 2 1060 150 66 153 chr3 57011083 57011241 -170513337 + L1ME1 LINE L1 5740 5910 -256 1896 159 42 0 chr3 57011241 57011575 -170513003 + L1MB5 LINE L1 5810 6157 -17 2016 130 0 7 chr3 57011581 57011888 -170512690 - AluSx SINE Alu -7 305 1 1060 150 66 153 chr3 57011888 57012088 -170512490 + L1ME1 LINE L1 5915 6073 -93 502 185 33 73 chr3 57012087 57012144 -170512434 + L1MC4 LINE L1 7756 7814 -228 * 1963 136 0 13 chr3 57012144 57012452 -170512126 - AluSx SINE Alu -8 304 1 502 185 33 73 chr3 57012452 57012545 -170512033 + L1MC4 LINE L1 7814 7900 -142 1244 150 113 73 chr3 57012882 57013037 -170511541 - AluJo SINE Alu 0 312 165 2179 96 0 10 chr3 57013037 57013339 -170511239 - AluSq SINE Alu -14 299 1 1962 116 21 0 chr3 57013349 57013633 -170510945 - AluSx SINE Alu -22 290 1 1244 150 113 73 chr3 57013633 57013766 -170510812 - AluJo SINE Alu -155 157 1 586 228 89 0 chr3 57013967 57014090 -170510488 + FLAM_A SINE Alu 1 134 -8 24 0 0 0 chr3 57014605 57014629 -170509949 + AT_rich Low_complexity Low_complexity 1 24 0 1755 145 0 36 chr3 57014632 57014936 -170509642 + AluJb SINE Alu 2 294 -18 1474 151 110 4 chr3 57014956 57015201 -170509377 + AluSx SINE Alu 11 281 -31 582 114 0 0 chr3 57015207 57015295 -170509283 + (CACAT)n Simple_repeat Simple_repeat 2 89 0 295 77 135 0 chr3 57016133 57016185 -170508393 + L1MB7 LINE L1 6062 6120 -64 2475 65 0 0 chr3 57016209 57016516 -170508062 - AluY SINE Alu -4 307 1 935 158 0 35 chr3 57016582 57016753 -170507825 - AluSg/x SINE Alu -3 307 143 849 163 22 0 chr3 57016853 57016988 -170507590 - AluJo SINE Alu -174 138 1 2155 106 3 3 chr3 57017426 57017719 -170506859 + AluSx SINE Alu 3 295 -17 2269 88 10 3 chr3 57017729 57018035 -170506543 + AluSc SINE Alu 1 308 -1 597 284 68 6 chr3 57020392 57020568 -170504010 - MIR SINE MIR -72 190 4 208 256 0 100 chr3 57024954 57025044 -170499534 + MER5A DNA MER1_type 81 161 -28 863 141 23 0 chr3 57025056 57025184 -170499394 - FLAM_C SINE Alu -2 131 1 1808 180 0 31 chr3 57025577 57025719 -170498859 + AluJo SINE Alu 1 146 -166 2073 113 3 0 chr3 57025719 57026058 -170498520 + AluSx SINE Alu 1 340 0 1808 180 0 31 chr3 57026058 57026236 -170498342 + AluJo SINE Alu 146 312 0 335 121 17 0 chr3 57026240 57026298 -170498280 + GA-rich Low_complexity Low_complexity 5 63 0 1584 137 30 0 chr3 57027403 57027673 -170496905 + L1MA3 LINE L1 6018 6295 -10 460 66 0 0 chr3 57027674 57027735 -170496843 - Alu SINE Alu -15 297 237 1547 111 0 0 chr3 57027835 57028052 -170496526 + AluSg/x SINE Alu 95 311 -1 334 278 20 92 chr3 57028055 57028130 -170496448 + L1MEc LINE L1 1274 1353 -5043 2513 65 0 0 chr3 57028130 57028437 -170496141 + AluY SINE Alu 1 307 -4 334 278 20 92 chr3 57028437 57028496 -170496082 + L1MEc LINE L1 1353 1415 -4981 2187 124 0 9 chr3 57028496 57028811 -170495767 + AluSx SINE Alu 1 312 0 334 278 20 92 chr3 57028811 57028970 -170495608 + L1MEc LINE L1 1415 1547 -4849 * 346 193 50 2 chr3 57028965 57028979 -170495599 + L1MEc LINE L1 2348 2360 -3855 864 150 0 15 chr3 57028979 57029141 -170495437 + FLAM_C SINE Alu 1 133 0 346 193 50 2 chr3 57029141 57029219 -170495359 + L1MEc LINE L1 2360 2444 -3771 2180 102 0 10 chr3 57029220 57029513 -170495065 + AluSg SINE Alu 1 290 -20 300 283 71 30 chr3 57029513 57029612 -170494966 + L1MEc LINE L1 2413 2515 -3700 307 100 0 0 chr3 57029612 57029662 -170494916 + Alu SINE Alu 248 297 -5 1833 158 7 3 chr3 57029700 57030004 -170494574 + AluJb SINE Alu 1 305 -7 290 343 36 11 chr3 57030125 57030399 -170494179 + L1MEc LINE L1 2030 2310 -4086 1862 155 0 23 chr3 57030431 57030740 -170493838 + AluJb SINE Alu 1 302 -10 311 268 98 0 chr3 57030767 57030849 -170493729 + L1MEc LINE L1 2304 2393 -4003 1822 120 8 4 chr3 57030853 57031157 -170493421 + AluSx SINE Alu 30 312 0 257 294 46 18 chr3 57031779 57031888 -170492690 + L2 LINE L2 2979 3090 -182 1057 265 100 3 chr3 57038424 57038854 -170485724 + L1ME3A LINE L1 5478 5953 -217 936 185 9 56 chr3 57038992 57039009 -170485569 - AluJb SINE Alu -4 308 292 1855 156 46 3 chr3 57039009 57039316 -170485262 - 7SLRNA srpRNA srpRNA 0 320 1 936 185 9 56 chr3 57039316 57039514 -170485064 - AluJb SINE Alu -20 292 103 237 83 0 125 chr3 57039617 57039665 -170484913 - Alu SINE Alu -133 170 129 278 247 52 31 chr3 57041182 57041279 -170483299 + L1ME LINE L1 5699 5797 -324 216 0 0 0 chr3 57041791 57041815 -170482763 + (TCC)n Simple_repeat Simple_repeat 2 25 0 2244 109 0 13 chr3 57052243 57052556 -170472022 + AluSp SINE Alu 3 311 -2 185 56 0 83 chr3 57053934 57053970 -170470608 + (TGGGGG)n Simple_repeat Simple_repeat 3 35 0 2519 61 3 0 chr3 57054290 57054600 -170469978 - AluY SINE Alu 0 311 1 908 129 0 0 chr3 57055116 57055240 -170469338 + AluJo/FLAM SINE Alu 1 124 -188 2000 94 8 0 chr3 57055243 57055510 -170469068 - AluSq SINE Alu -19 294 26 1601 156 41 14 chr3 57056000 57056295 -170468283 - AluJo SINE Alu -9 303 1 517 312 110 9 chr3 57056334 57056552 -170468026 - MIR SINE MIR 0 262 23 197 289 52 41 chr3 57057755 57057852 -170466726 - MIR3 SINE MIR -30 178 81 1963 130 10 7 chr3 57059018 57059311 -170465267 + AluSx SINE Alu 1 294 -18 1967 133 93 13 chr3 57059574 57059949 -170464629 + MSTA LTR MaLR 1 405 -23 191 250 125 28 chr3 57061147 57061219 -170463359 - L2 LINE L2 -24 3248 3170 2231 105 0 3 chr3 57061757 57062061 -170462517 - AluSx SINE Alu -9 303 1 1019 275 18 21 chr3 57062078 57062405 -170462173 + L2 LINE L2 2089 2414 -900 357 211 0 0 chr3 57062479 57062556 -170462022 - AluJ/FRAM SINE Alu -7 295 228 587 289 32 0 chr3 57062557 57062713 -170461865 - L2 LINE L2 -513 2801 2641 500 162 0 81 chr3 57062715 57062814 -170461764 + FRAM SINE Alu 31 121 -55 670 294 75 49 chr3 57062818 57063133 -170461445 + L2 LINE L2 2826 3131 -182 2266 81 17 0 chr3 57063133 57063428 -170461150 - AluSc SINE Alu -9 300 1 1973 117 7 3 chr3 57063428 57063710 -170460868 - AluSg SINE Alu -27 283 1 670 294 75 49 chr3 57063710 57063740 -170460838 + L2 LINE L2 3130 3181 -132 2148 101 0 3 chr3 57064116 57064412 -170460166 - AluSx SINE Alu -4 308 14 457 125 0 80 chr3 57064467 57064549 -170460029 + FLAM_A SINE Alu 42 137 0 187 43 0 0 chr3 57064549 57064572 -170460006 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 2353 73 0 3 chr3 57064743 57065046 -170459532 - AluY SINE Alu -9 302 1 2327 74 3 0 chr3 57065046 57065342 -170459236 - AluSg1 SINE Alu -12 297 1 1190 134 0 0 chr3 57065342 57065514 -170459064 - AluSg/x SINE Alu -7 303 132 2253 69 7 0 chr3 57065514 57065804 -170458774 - AluY SINE Alu -15 296 5 2124 90 4 0 chr3 57065807 57066108 -170458470 - AluSg1 SINE Alu 0 302 1 2196 100 0 19 chr3 57066108 57066419 -170458159 - AluSx SINE Alu -7 305 1 22 35 0 0 chr3 57067157 57067186 -170457392 + GC_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr3 57067616 57067637 -170456941 + (T)n Simple_repeat Simple_repeat 1 21 0 2068 94 66 0 chr3 57068103 57068391 -170456187 + AluSp SINE Alu 1 307 -6 593 101 0 45 chr3 57068492 57068581 -170455997 + AluSg/x SINE Alu 206 290 -22 746 141 37 52 chr3 57068590 57068725 -170455853 + FLAM_A SINE Alu 1 133 0 1919 119 0 21 chr3 57068727 57069035 -170455543 + AluSx SINE Alu 14 315 0 2218 99 0 0 chr3 57069039 57069364 -170455214 + AluSx SINE Alu 1 325 0 2231 105 0 0 chr3 57069364 57069658 -170454920 + AluSx SINE Alu 1 294 -18 2366 57 0 0 chr3 57069660 57069974 -170454604 + AluY SINE Alu 1 314 0 2280 86 0 3 chr3 57069974 57070321 -170454257 + AluSq SINE Alu 1 346 0 1857 152 3 19 chr3 57070323 57070638 -170453940 + AluJb SINE Alu 1 310 -2 529 228 0 24 chr3 57070693 57070820 -170453758 - MIR SINE MIR -75 187 64 2393 60 0 10 chr3 57070855 57071153 -170453425 - AluY SINE Alu -16 295 1 284 297 125 16 chr3 57074325 57074453 -170450125 + L2 LINE L2 2841 2982 -331 233 257 89 47 chr3 57075571 57075604 -170448974 - MIR3 SINE MIR -58 150 120 2152 97 13 7 chr3 57075604 57075912 -170448666 - AluSg SINE Alu 0 310 1 233 257 89 47 chr3 57075912 57076064 -170448514 - MIR3 SINE MIR -88 120 5 225 302 81 0 chr3 57076042 57076128 -170448450 + MIR3 SINE MIR 62 154 -54 * 198 71 0 0 chr3 57077963 57077991 -170446587 + (TGG)n Simple_repeat Simple_repeat 3 30 0 2144 71 7 52 chr3 57080396 57080704 -170443874 - AluSx SINE Alu -18 294 1 740 156 55 23 chr3 57081065 57081193 -170443385 + FLAM_C SINE Alu 1 132 -1 2034 92 13 57 chr3 57081224 57081539 -170443039 + AluSx SINE Alu 1 301 -11 231 270 226 31 chr3 57081897 57082056 -170442522 + L2 LINE L2 2915 3104 -168 2251 112 0 0 chr3 57082995 57083299 -170441279 - AluSx SINE Alu -8 304 1 527 0 0 16 chr3 57087220 57087284 -170437294 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 189 0 0 0 chr3 57087286 57087307 -170437271 + (TTG)n Simple_repeat Simple_repeat 1 21 0 411 299 19 0 chr3 57087362 57087469 -170437109 - MIR SINE MIR -74 188 80 283 336 99 40 chr3 57088192 57088415 -170436163 + L2 LINE L2 2715 2950 -364 263 317 152 30 chr3 57088782 57088946 -170435632 - L2 LINE L2 -9 3304 3121 405 220 92 35 chr3 57089556 57089697 -170434881 - L1ME4a LINE L1 0 6121 5973 1813 106 0 4 chr3 57089698 57089953 -170434625 - AluSx SINE Alu -10 302 49 715 158 143 0 chr3 57089959 57090113 -170434465 - AluJb SINE Alu 0 302 130 2203 83 30 3 chr3 57090115 57090416 -170434162 - AluSp SINE Alu 0 313 5 1736 168 3 20 chr3 57090420 57090578 -170434000 - AluJo SINE Alu -20 292 140 2230 109 0 0 chr3 57090578 57090881 -170433697 - AluSg SINE Alu -4 306 4 1736 168 3 20 chr3 57090881 57091019 -170433559 - AluJo SINE Alu -172 140 1 479 347 37 11 chr3 57091078 57091268 -170433310 - MIR SINE MIR -21 241 47 1438 189 16 26 chr3 57091295 57091601 -170432977 + AluJb SINE Alu 10 312 0 264 268 54 45 chr3 57092126 57092238 -170432340 + MIR SINE MIR 3 115 -147 1250 154 10 5 chr3 57093090 57093298 -170431280 - AluJo SINE Alu -103 209 1 2272 63 0 11 chr3 57093312 57093626 -170430952 - AluY SINE Alu 0 311 1 262 216 69 10 chr3 57093634 57093736 -170430842 + L2 LINE L2 1271 1378 -1936 451 128 16 120 chr3 57093847 57093880 -170430698 + L2 LINE L2 2426 2461 -853 2000 144 0 3 chr3 57093880 57094186 -170430392 + AluY SINE Alu 1 305 -6 451 128 16 120 chr3 57094186 57094277 -170430301 + L2 LINE L2 2461 2537 -777 2883 181 58 15 chr3 57094348 57094477 -170430101 + MLT1F LTR MaLR 3 125 -417 1984 141 3 10 chr3 57094477 57094781 -170429797 + AluSx SINE Alu 1 302 -10 2883 181 58 15 chr3 57094781 57095169 -170429409 + MLT1F LTR MaLR 125 542 0 1911 173 0 0 chr3 57095195 57095495 -170429083 - AluJb SINE Alu -12 300 1 1245 162 15 0 chr3 57095624 57095821 -170428757 + AluJb SINE Alu 85 284 -28 1393 270 27 54 chr3 57095915 57096457 -170428121 + L2 LINE L2 2534 3061 -252 1804 161 7 17 chr3 57096542 57096840 -170427738 - AluJb SINE Alu -17 295 1 2320 91 0 0 chr3 57096863 57097159 -170427419 - AluSx SINE Alu -16 296 1 354 219 62 0 chr3 57097350 57097446 -170427132 + MIR SINE MIR 104 205 -57 1286 105 6 0 chr3 57097830 57098011 -170426567 + AluSq SINE Alu 132 313 0 2198 83 0 35 chr3 57099009 57099321 -170425257 + AluSq SINE Alu 1 301 -12 514 174 6 174 chr3 57100391 57100459 -170424119 - MER5B DNA MER1_type 0 178 157 1828 125 45 0 chr3 57100459 57100747 -170423831 + AluSx SINE Alu 1 301 -11 514 174 6 174 chr3 57100747 57100856 -170423722 - MER5B DNA MER1_type -21 157 31 547 229 0 9 chr3 57101536 57101645 -170422933 + FRAM SINE Alu 1 104 -72 330 87 0 0 chr3 57101668 57101714 -170422864 + (GGAA)n Simple_repeat Simple_repeat 2 47 0 783 152 0 43 chr3 57101792 57101930 -170422648 - FLAM_C SINE Alu 0 133 2 2063 120 14 0 chr3 57102007 57102298 -170422280 - AluSg1 SINE Alu -14 295 1 2269 81 3 29 chr3 57102316 57102626 -170421952 - AluSg SINE Alu -8 302 1 2259 95 0 3 chr3 57102628 57102932 -170421646 - AluSc SINE Alu -6 303 1 1053 50 0 50 chr3 57102932 57103073 -170421505 - AluSg SINE Alu -176 134 1 2284 87 3 3 chr3 57103347 57103646 -170420932 - AluSp SINE Alu -14 299 1 1713 157 43 0 chr3 57103646 57103927 -170420651 - AluJo SINE Alu -17 295 3 606 202 0 0 chr3 57103931 57104040 -170420538 - FLAM_A SINE Alu -11 131 23 1984 159 0 19 chr3 57154404 57154712 -170369866 - AluSx SINE Alu -7 305 4 1031 219 88 0 chr3 57154952 57155157 -170369421 + MER58A DNA MER1_type 1 223 -1 1353 115 0 0 chr3 57155297 57155480 -170369098 + AluSg/x SINE Alu 116 298 -14 1960 131 27 10 chr3 57155539 57155836 -170368742 + AluSx SINE Alu 1 302 -10 2089 90 72 0 chr3 57155836 57156126 -170368452 + AluY SINE Alu 1 311 0 2537 58 0 10 chr3 57156480 57156789 -170367789 + AluY SINE Alu 1 306 -5 802 178 29 23 chr3 57157010 57157184 -170367394 - MER5A DNA MER1_type -14 175 1 2102 133 0 13 chr3 57157266 57157574 -170367004 + AluSx SINE Alu 1 304 -8 286 123 53 18 chr3 57157574 57157631 -170366947 - L1MC4 LINE L1 -228 7814 7756 * 384 153 69 149 chr3 57157604 57157830 -170366748 - L1ME3 LINE L1 -54 6108 5866 2132 131 0 7 chr3 57157830 57158136 -170366442 + AluSx SINE Alu 1 304 -8 1908 159 42 0 chr3 57158142 57158476 -170366102 - L1MB5 LINE L1 -17 6157 5810 384 153 69 149 chr3 57158476 57158634 -170365944 - L1ME3 LINE L1 -301 5861 5740 437 201 180 7 chr3 57158749 57158888 -170365690 + MER46C DNA MER2_type 2 164 -174 246 252 139 35 chr3 57158918 57159033 -170365545 + MER46C DNA MER2_type 212 338 0 1807 85 17 0 chr3 57159406 57159642 -170364936 + AluSg/x SINE Alu 72 311 -1 1116 149 58 0 chr3 57159642 57159816 -170364762 - AluSg/x SINE Alu -38 274 91 820 155 0 0 chr3 57159997 57160126 -170364452 + FLAM_C SINE Alu 5 133 0 2244 112 7 0 chr3 57160279 57160575 -170364003 - AluSx SINE Alu -14 298 1 231 265 29 69 chr3 57160596 57160698 -170363880 + L1ME LINE L1 5706 5803 -367 1148 115 0 0 chr3 57160699 57160855 -170363723 - AluY SINE Alu -2 309 154 1624 68 0 0 chr3 57160855 57161046 -170363532 - AluY SINE Alu -120 191 1 984 252 97 26 chr3 57161065 57161451 -170363127 + L1ME3A LINE L1 5756 6163 -7 2143 106 38 0 chr3 57161770 57162062 -170362516 + AluSx SINE Alu 1 303 -9 585 228 89 0 chr3 57162356 57162479 -170362099 + FLAM_A SINE Alu 1 134 -8 2039 130 10 7 chr3 57162527 57162819 -170361759 - AluSq SINE Alu -20 293 1 2092 152 3 0 chr3 57162830 57163140 -170361438 - AluSx SINE Alu -1 311 1 1661 183 7 0 chr3 57163361 57163645 -170360933 - AluJb SINE Alu -26 286 1 1478 173 83 4 chr3 57163888 57164165 -170360413 + AluSx SINE Alu 1 299 -13 2002 106 15 4 chr3 57164493 57164766 -170359812 + AluSq SINE Alu 1 276 -37 207 0 0 0 chr3 57164773 57164796 -170359782 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1607 107 0 5 chr3 57164933 57165149 -170359429 + AluSc SINE Alu 80 294 -15 212 0 0 35 chr3 57165152 57165181 -170359397 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 772 161 0 29 chr3 57165207 57165344 -170359234 + FLAM_C SINE Alu 1 133 0 219 57 151 0 chr3 57166264 57166317 -170358261 + CT-rich Low_complexity Low_complexity 3 63 0 182 37 37 0 chr3 57166319 57166346 -170358232 + (TCCCC)n Simple_repeat Simple_repeat 4 31 0 1406 204 25 18 chr3 57166352 57166632 -170357946 - AluJo SINE Alu -30 282 1 1602 167 20 56 chr3 57166642 57166948 -170357630 - AluJo SINE Alu -17 295 1 1876 165 10 7 chr3 57167234 57167531 -170357047 + AluJb SINE Alu 1 298 -14 336 167 0 0 chr3 57168088 57168148 -170356430 - AluS SINE Alu -10 292 233 2203 100 31 0 chr3 57168164 57168455 -170356123 - AluSx SINE Alu -12 300 1 2031 120 3 57 chr3 57168589 57168905 -170355673 - AluSp SINE Alu -14 299 1 1041 109 0 7 chr3 57168905 57169042 -170355536 - AluSq/x SINE Alu -176 136 1 522 214 0 10 chr3 57169078 57169176 -170355402 - AluJ/FLAM SINE Alu -214 98 2 1503 202 0 39 chr3 57169515 57169649 -170354929 + AluJb SINE Alu 6 144 -168 1757 197 0 0 chr3 57169649 57169949 -170354629 + AluSx SINE Alu 1 300 -12 1503 202 0 39 chr3 57169949 57170121 -170354457 + AluJb SINE Alu 144 300 -12 936 168 0 26 chr3 57170122 57170277 -170354301 + AluJb SINE Alu 135 285 -27 393 167 0 0 chr3 57170367 57170445 -170354133 + (TA)n Simple_repeat Simple_repeat 2 79 0 208 143 0 0 chr3 57170530 57170565 -170354013 + (A)n Simple_repeat Simple_repeat 1 35 0 2226 110 0 0 chr3 57170567 57170877 -170353701 + AluSg SINE Alu 1 310 0 1371 51 6 23 chr3 57170944 57171121 -170353457 + AluY SINE Alu 137 310 -1 1792 113 0 0 chr3 57173740 57173979 -170350599 - AluSg/x SINE Alu -4 306 68 1242 153 111 101 chr3 57174468 57174630 -170349948 - AluJo SINE Alu -2 310 151 2309 89 0 10 chr3 57174630 57174923 -170349655 - AluSq SINE Alu -23 290 1 2071 120 21 0 chr3 57174933 57175217 -170349361 - AluSx SINE Alu -22 290 1 1242 153 111 101 chr3 57175217 57175350 -170349228 - AluJo SINE Alu -169 143 1 585 228 89 0 chr3 57175551 57175674 -170348904 + FLAM_A SINE Alu 1 134 -8 24 0 0 0 chr3 57176189 57176213 -170348365 + AT_rich Low_complexity Low_complexity 1 24 0 1879 145 0 36 chr3 57176216 57176520 -170348058 + AluJb SINE Alu 2 294 -18 1521 151 110 4 chr3 57176540 57176785 -170347793 + AluSx SINE Alu 11 281 -31 570 29 0 0 chr3 57176791 57176859 -170347719 + (CACAT)n Simple_repeat Simple_repeat 2 69 0 339 77 135 0 chr3 57177698 57177750 -170346828 + L1MB7 LINE L1 6062 6120 -64 2125 63 0 0 chr3 57177774 57178028 -170346550 - AluY SINE Alu -4 307 54 1496 109 14 5 chr3 57178211 57178421 -170346157 - AluSg/x SINE Alu -15 295 84 821 241 10 5 chr3 57178869 57179064 -170345514 - L1MD2 LINE L1 -12 6347 6152 276 247 27 0 chr3 57179163 57179236 -170345342 + L1ME LINE L1 5704 5778 -343 237 250 42 14 chr3 57179243 57179315 -170345263 - MIR SINE MIR -13 249 176 200 275 235 27 chr3 57179337 57179486 -170345092 - L2 LINE L2 -22 3291 3112 1961 135 4 0 chr3 57179521 57179802 -170344776 - AluSx SINE Alu -30 282 1 991 152 23 12 chr3 57179804 57179975 -170344603 - AluJb SINE Alu -16 296 124 269 304 29 10 chr3 57179977 57180079 -170344499 - L2 LINE L2 -255 3058 2955 207 329 71 0 chr3 57180165 57180250 -170344328 - MIR SINE MIR -170 92 2 2370 105 0 0 chr3 57180251 57180556 -170344022 - AluSx SINE Alu -6 306 2 207 0 0 0 chr3 57180558 57180581 -170343997 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2163 109 0 0 chr3 57180581 57180864 -170343714 - AluY SINE Alu -28 283 1 1335 159 78 78 chr3 57180898 57181041 -170343537 - AluJo SINE Alu -13 299 157 2523 64 0 3 chr3 57181041 57181339 -170343239 - AluY SINE Alu -14 297 1 2333 112 0 0 chr3 57181341 57181646 -170342932 - AluSx SINE Alu -7 305 1 1335 159 78 78 chr3 57181646 57181794 -170342784 - AluJo SINE Alu -155 157 5 24 0 0 0 chr3 57182311 57182335 -170342243 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr3 57182733 57182765 -170341813 + AT_rich Low_complexity Low_complexity 1 32 0 566 365 21 3 chr3 57183673 57183955 -170340623 + L2 LINE L2 2672 2958 -356 765 226 0 0 chr3 57184495 57184628 -170339950 + FLAM_A SINE Alu 1 133 0 1145 168 0 21 chr3 57184665 57184856 -170339722 - AluJo SINE Alu -21 291 105 2026 129 0 16 chr3 57184961 57185270 -170339308 - AluSx SINE Alu -8 304 1 1328 161 47 141 chr3 57185356 57185740 -170338838 - MER7A DNA MER2_type 0 346 1 2277 233 62 58 chr3 57186136 57186841 -170337737 - MER21B LTR ERV1 -155 708 1 1659 199 3 3 chr3 57187142 57187466 -170337112 - AluJb SINE Alu 0 333 10 182 387 48 0 chr3 57187735 57187859 -170336719 - MIR SINE MIR -66 196 67 219 203 68 17 chr3 57187932 57187991 -170336587 - L2 LINE L2 -37 3235 3174 2178 119 0 0 chr3 57188593 57188879 -170335699 + AluSx SINE Alu 11 296 -16 1085 117 0 0 chr3 57189035 57189180 -170335398 + AluSp SINE Alu 152 296 -17 1650 192 17 14 chr3 57189290 57189587 -170334991 - AluJb SINE Alu -14 298 1 324 0 0 0 chr3 57189896 57189932 -170334646 + (TG)n Simple_repeat Simple_repeat 2 37 0 1948 97 83 11 chr3 57190519 57190797 -170333781 + AluSx SINE Alu 1 298 -14 460 331 62 8 chr3 57192087 57192329 -170332249 + MIR SINE MIR 5 259 -3 204 40 0 0 chr3 57195570 57195595 -170328983 + (T)n Simple_repeat Simple_repeat 1 25 0 2420 75 7 0 chr3 57195646 57195952 -170328626 - AluSp SINE Alu -5 308 1 1306 188 133 16 chr3 57196306 57196416 -170328162 - MER2 DNA MER2_type 0 344 248 1554 152 67 25 chr3 57196416 57196699 -170327879 + AluJo SINE Alu 1 295 -17 1306 188 133 16 chr3 57196699 57196896 -170327682 - MER2 DNA MER2_type -96 248 1 268 161 152 54 chr3 57197086 57197198 -170327380 - L2 LINE L2 -178 3135 3013 1801 137 32 14 chr3 57197347 57197489 -170327089 - AluSx SINE Alu -29 283 145 2425 95 0 0 chr3 57197489 57197795 -170326783 - AluSx SINE Alu -6 306 1 1801 137 32 14 chr3 57197795 57197930 -170326648 - AluSx SINE Alu -167 145 1 29 28 0 0 chr3 57197933 57197969 -170326609 + AT_rich Low_complexity Low_complexity 1 36 0 2403 95 7 0 chr3 57198141 57198445 -170326133 + AluSx SINE Alu 1 306 -6 865 184 46 13 chr3 57198601 57198753 -170325825 + FRAM SINE Alu 1 157 -19 328 195 17 25 chr3 57199231 57199349 -170325229 - L1MB8 LINE L1 -13 6165 6049 1813 183 6 10 chr3 57199360 57199672 -170324906 - AluJo SINE Alu -1 311 1 814 169 8 0 chr3 57199738 57199868 -170324710 - FLAM_C SINE Alu -2 131 1 2526 70 0 0 chr3 57199876 57200177 -170324401 - AluY SINE Alu -10 301 1 270 200 200 0 chr3 57200195 57200255 -170324323 - L1MC4 LINE L1 -11 8031 7960 2301 95 3 3 chr3 57200259 57200563 -170324015 - AluSp SINE Alu -9 304 1 2132 100 11 0 chr3 57200909 57201190 -170323388 + AluSc SINE Alu 1 284 -25 1172 123 32 11 chr3 57201396 57201583 -170322995 + MER20 DNA MER1_type 29 219 0 1324 100 11 6 chr3 57202410 57202590 -170321988 + AluSc SINE Alu 122 302 -7 22 0 0 0 chr3 57202590 57202612 -170321966 + AT_rich Low_complexity Low_complexity 1 22 0 2204 126 0 3 chr3 57202613 57202923 -170321655 - AluSg SINE Alu 0 310 2 2436 55 0 7 chr3 57202926 57203250 -170321328 - AluY SINE Alu 0 322 1 326 139 153 0 chr3 57203258 57203330 -170321248 - L1MA6 LINE L1 0 6300 6218 4657 129 36 38 chr3 57203331 57204193 -170320385 - L1MA7 LINE L1 -4 6287 5428 681 218 75 7 chr3 57204194 57204341 -170320237 - AluJb SINE Alu -19 293 137 2027 165 0 0 chr3 57204342 57204645 -170319933 - AluSx SINE Alu -9 303 1 1906 145 8 129 chr3 57204648 57204795 -170319783 - L1MA7 LINE L1 -735 5436 5273 2563 70 0 3 chr3 57204795 57205107 -170319471 + AluY SINE Alu 1 311 0 1906 145 8 129 chr3 57205107 57205438 -170319140 - L1MA7 LINE L1 -898 5273 5012 4086 135 51 37 chr3 57205475 57206101 -170318477 - L1MC1 LINE L1 -82 6251 5612 2306 102 10 3 chr3 57206101 57206406 -170318172 - AluSc SINE Alu -2 307 1 4086 135 51 37 chr3 57206406 57206529 -170318049 - L1MC1 LINE L1 -721 5612 5492 1969 139 36 3 chr3 57206541 57206843 -170317735 - AluSx SINE Alu 0 312 1 1259 155 45 174 chr3 57206843 57207039 -170317539 - L1MC1 LINE L1 -1898 4248 4028 836 174 0 0 chr3 57207039 57207171 -170317407 - FLAM_C SINE Alu 0 133 2 1259 155 45 174 chr3 57207171 57207436 -170317142 - L1MC1 LINE L1 -2118 4028 3847 1612 199 7 26 chr3 57207436 57207742 -170316836 - AluJo SINE Alu -12 300 1 1441 184 31 8 chr3 57207742 57208095 -170316483 - L1MC1 LINE L1 -2850 3296 2936 1613 206 71 3 chr3 57208120 57208431 -170316147 - MER7A DNA MER2_type -14 332 3 875 262 75 4 chr3 57208436 57208715 -170315863 - L1MC1 LINE L1 -3212 2934 2636 2136 120 0 3 chr3 57208875 57209182 -170315396 + AluSx SINE Alu 1 306 0 879 112 8 15 chr3 57209260 57209394 -170315184 - AluSg/x SINE Alu 0 312 180 750 129 14 50 chr3 57209453 57209592 -170314986 + AluJb SINE Alu 168 301 -11 23 0 0 0 chr3 57209786 57209809 -170314769 + AT_rich Low_complexity Low_complexity 1 23 0 2371 105 3 0 chr3 57209842 57210148 -170314430 - AluSp SINE Alu -5 308 2 1925 154 0 7 chr3 57210336 57210628 -170313950 + AluJo SINE Alu 1 290 -22 252 132 0 44 chr3 57210713 57210781 -170313797 + (TTC)n Simple_repeat Simple_repeat 2 66 0 1291 115 0 0 chr3 57210825 57210999 -170313579 - AluSq SINE Alu -13 300 127 2151 106 38 0 chr3 57211175 57211468 -170313110 - AluSx SINE Alu -8 304 1 984 252 97 26 chr3 57211787 57212173 -170312405 - L1ME3A LINE L1 -7 6163 5756 1624 68 0 0 chr3 57212192 57212383 -170312195 + AluY SINE Alu 1 191 -120 1174 109 0 0 chr3 57212383 57212539 -170312039 + AluY SINE Alu 154 309 -2 231 265 29 69 chr3 57212540 57212642 -170311936 - L1ME LINE L1 -367 5803 5706 2244 112 7 0 chr3 57212663 57212959 -170311619 + AluSx SINE Alu 1 298 -14 2615 7 0 0 chr3 57213108 57213385 -170311193 - AluYa5 SINE Alu -2 309 33 796 159 0 0 chr3 57213385 57213511 -170311067 - AluJo/FLAM SINE Alu -172 130 5 1116 149 58 0 chr3 57213692 57213866 -170310712 + AluSg/x SINE Alu 91 274 -38 2329 101 13 0 chr3 57213866 57214173 -170310405 - AluSx SINE Alu -1 311 1 1329 131 0 15 chr3 57214174 57214410 -170310168 - AluSc SINE Alu -15 294 1 195 42 0 0 chr3 57214425 57214449 -170310129 + (A)n Simple_repeat Simple_repeat 1 24 0 1575 139 56 4 chr3 57214452 57214703 -170309875 + AluSx SINE Alu 33 296 -16 2602 182 29 11 chr3 57215114 57215636 -170308942 - L1MB7 LINE L1 -19 6165 5635 274 212 76 42 chr3 57216454 57216572 -170308006 + L2 LINE L2 3184 3305 -8 2353 98 0 0 chr3 57217236 57217541 -170307037 + AluSg SINE Alu 6 310 0 1416 170 8 28 chr3 57217544 57217797 -170306781 + AluJb SINE Alu 25 272 -40 1537 137 7 79 chr3 57217797 57218089 -170306489 + AluJo SINE Alu 36 306 -6 955 240 98 24 chr3 57218354 57218650 -170305928 - MLT1J LTR MaLR 0 511 194 502 131 47 9 chr3 57218650 57218757 -170305821 + L1MA1 LINE L1 5963 6073 -229 5991 47 3 25 chr3 57218757 57219514 -170305064 + L1PA5 LINE L1 5406 6149 -5 1557 82 19 82 chr3 57219514 57219763 -170304815 + L1MA1 LINE L1 6049 6298 -4 641 287 51 10 chr3 57219771 57219966 -170304612 - MLT1J LTR MaLR -302 209 7 2361 87 0 10 chr3 57219976 57220276 -170304302 + AluSc SINE Alu 1 297 -12 34 42 0 0 chr3 57220394 57220442 -170304136 + AT_rich Low_complexity Low_complexity 1 48 0 2378 86 7 0 chr3 57220480 57220781 -170303797 + AluSq SINE Alu 1 303 -10 2190 111 0 0 chr3 57220804 57221092 -170303486 + AluSx SINE Alu 15 302 -10 37 0 0 0 chr3 57221196 57221233 -170303345 + AT_rich Low_complexity Low_complexity 1 37 0 2169 117 13 0 chr3 57221417 57221715 -170302863 - AluSc SINE Alu -7 302 1 211 234 0 0 chr3 57221838 57221885 -170302693 + T-rich Low_complexity Low_complexity 1 47 0 1133 126 0 0 chr3 57221907 57222058 -170302520 - AluSq/x SINE Alu -162 151 1 2387 79 3 0 chr3 57222254 57222545 -170302033 + AluSx SINE Alu 1 292 -20 674 112 0 17 chr3 57222746 57222862 -170301716 + (TCTCC)n Simple_repeat Simple_repeat 2 115 0 1365 111 15 0 chr3 57222897 57223095 -170301483 - MER50 LTR ERV1 -37 697 497 2549 70 0 0 chr3 57223190 57223491 -170301087 + AluY SINE Alu 5 305 -6 2203 106 3 7 chr3 57223552 57223845 -170300733 - AluSg SINE Alu -18 292 1 965 120 8 0 chr3 57223846 57223979 -170300599 - AluSq/x SINE Alu -178 135 2 1935 102 0 19 chr3 57224571 57224837 -170299741 - AluSc SINE Alu -16 293 33 1722 173 0 20 chr3 57224903 57225198 -170299380 + AluJo SINE Alu 1 289 -23 597 221 0 41 chr3 57225466 57225588 -170298990 - FLAM_C SINE Alu -25 118 2 2485 87 0 0 chr3 57225595 57225905 -170298673 - AluSq SINE Alu -1 312 3 2334 93 0 6 chr3 57226335 57226647 -170297931 + AluY SINE Alu 1 310 -1 2090 108 3 29 chr3 57227025 57227331 -170297247 - AluSq SINE Alu -14 299 2 2471 80 0 0 chr3 57227946 57228247 -170296331 + AluY SINE Alu 1 301 -10 411 260 0 0 chr3 57228247 57228370 -170296208 + (TA)n Simple_repeat Simple_repeat 1 123 0 1825 164 42 0 chr3 57228426 57228713 -170295865 - AluJb SINE Alu -13 299 1 211 370 0 20 chr3 57229721 57229821 -170294757 + MIR SINE MIR 42 139 -69 1875 128 0 67 chr3 57230217 57230530 -170294048 + AluJb SINE Alu 1 292 -20 2214 100 3 17 chr3 57230968 57231267 -170293311 + AluSx SINE Alu 1 295 -17 321 169 0 0 chr3 57231291 57231350 -170293228 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 2111 128 0 0 chr3 57231359 57231649 -170292929 - AluSc SINE Alu -19 290 1 1948 122 24 14 chr3 57231649 57231944 -170292634 - AluSx SINE Alu -14 298 1 1717 93 151 0 chr3 57232108 57232366 -170292212 + AluSc SINE Alu 1 297 -2 23 0 0 0 chr3 57232657 57232680 -170291898 + AT_rich Low_complexity Low_complexity 1 23 0 207 299 30 0 chr3 57233197 57233264 -170291314 - L2 LINE L2 -1 3271 3203 904 234 99 0 chr3 57233502 57233724 -170290854 - MIR SINE MIR -1 261 18 2360 99 0 0 chr3 57233767 57234061 -170290517 + AluSg SINE Alu 1 294 -16 2443 89 3 0 chr3 57234064 57234368 -170290210 + AluSp SINE Alu 1 305 -8 376 286 189 0 chr3 57234589 57234774 -170289804 + MIR SINE MIR 43 262 0 2108 121 7 0 chr3 57236578 57236867 -170287711 - AluSx SINE Alu -21 291 1 207 0 0 0 chr3 57236869 57236892 -170287686 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2123 106 0 11 chr3 57236892 57237176 -170287402 - AluSg SINE Alu -29 281 1 693 161 8 8 chr3 57237492 57237622 -170286956 - L1MB4 LINE L1 -2 6178 6049 707 153 0 25 chr3 57237622 57237740 -170286838 - FLAM_A SINE Alu -10 132 18 851 185 12 19 chr3 57237766 57237928 -170286650 - AluJb SINE Alu -7 305 145 3777 172 53 38 chr3 57237928 57238817 -170285761 - L1MB5 LINE L1 -104 6070 5164 1804 152 0 28 chr3 57238839 57239122 -170285456 + AluJb SINE Alu 12 286 -26 2348 103 3 0 chr3 57239130 57239430 -170285148 + AluSp SINE Alu 1 301 -12 1190 173 75 0 chr3 57239474 57239688 -170284890 + L1ME1 LINE L1 5691 5920 -264 446 162 111 39 chr3 57239692 57239838 -170284740 + L1ME1 LINE L1 5986 6131 -35 1974 158 0 0 chr3 57239838 57240135 -170284443 - AluSx SINE Alu -15 297 1 446 162 111 39 chr3 57240135 57240161 -170284417 + L1ME1 LINE L1 6131 6154 -12 761 223 34 4 chr3 57240208 57240389 -170284189 - L1MB5 LINE L1 -1192 4954 4771 795 266 75 54 chr3 57240400 57240731 -170283847 - MLT1I LTR MaLR -28 381 44 396 0 0 0 chr3 57240757 57240801 -170283777 + (TG)n Simple_repeat Simple_repeat 2 45 0 483 210 14 58 chr3 57240837 57240975 -170283603 + MIR SINE MIR 76 207 -55 2473 82 3 0 chr3 57241014 57241317 -170283261 + AluSp SINE Alu 1 304 -9 2059 111 0 36 chr3 57242273 57242579 -170281999 - AluSg SINE Alu -15 295 1 2261 97 10 0 chr3 57242587 57242886 -170281692 - AluY SINE Alu -9 302 1 1947 127 32 7 chr3 57242910 57243194 -170281384 + AluSx SINE Alu 1 291 -21 2572 71 0 0 chr3 57244050 57244358 -170280220 - AluY SINE Alu -3 308 1 2479 78 3 3 chr3 57245069 57245376 -170279202 + AluSq SINE Alu 1 307 -6 2545 53 0 7 chr3 57246399 57246700 -170277878 + AluY SINE Alu 1 299 -12 819 215 0 45 chr3 57247762 57247939 -170276639 + FAM SINE Alu 1 169 -6 2536 65 0 16 chr3 57248232 57248542 -170276036 + AluY SINE Alu 1 305 -6 234 0 0 0 chr3 57249326 57249352 -170275226 + (T)n Simple_repeat Simple_repeat 1 26 0 2466 68 0 3 chr3 57249990 57250286 -170274292 + AluSc SINE Alu 1 295 -14 1743 195 3 0 chr3 57250648 57250956 -170273622 - AluJo SINE Alu 0 312 4 1757 147 48 10 chr3 57251091 57251383 -170273195 + AluJb SINE Alu 1 303 -9 1805 112 4 4 chr3 57251386 57251627 -170272951 + AluSx SINE Alu 2 242 -70 2268 86 10 13 chr3 57251693 57251997 -170272581 - AluSg SINE Alu -7 303 1 1056 139 0 0 chr3 57252270 57252445 -170272133 - AluSg/x SINE Alu 0 306 132 2036 133 17 0 chr3 57252445 57252738 -170271840 - AluY SINE Alu -13 298 1 1990 124 3 3 chr3 57254312 57254594 -170269984 + AluSx SINE Alu 1 282 -30 270 0 0 0 chr3 57254598 57254628 -170269950 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 2296 113 7 13 chr3 57254679 57254989 -170269589 + AluSx SINE Alu 1 308 -4 251 293 15 68 chr3 57255164 57255297 -170269281 + MIR3 SINE MIR 11 136 -72 1946 149 17 0 chr3 57257007 57257303 -170267275 + AluJb SINE Alu 1 301 -11 930 203 0 0 chr3 57257321 57257484 -170267094 + FRAM SINE Alu 1 163 -3 2329 97 0 0 chr3 57257852 57258142 -170266436 + AluSg SINE Alu 1 290 -20 549 138 16 89 chr3 57259311 57259434 -170265144 + FLAM_C SINE Alu 21 134 -9 2446 94 0 0 chr3 57259581 57259888 -170264690 + AluSg SINE Alu 1 307 -3 2314 116 0 6 chr3 57259903 57260214 -170264364 + AluSx SINE Alu 1 309 -3 353 298 70 33 chr3 57260309 57260551 -170264027 + MER112 DNA MER1_type 4 254 -6 2081 174 55 26 chr3 57260983 57261368 -170263210 - MSTD LTR MaLR 0 396 1 185 282 16 65 chr3 57261385 57261509 -170263069 + L2 LINE L2 2624 2741 -573 2103 74 81 0 chr3 57261624 57261907 -170262671 - AluSx SINE Alu -6 306 1 2195 76 4 0 chr3 57262101 57262365 -170262213 - AluSp SINE Alu -14 299 35 2173 108 3 26 chr3 57262645 57262950 -170261628 + AluSq SINE Alu 1 298 -15 2393 112 0 0 chr3 57263744 57264047 -170260531 - AluSx SINE Alu -9 303 1 2306 81 0 24 chr3 57264081 57264376 -170260202 + AluSg SINE Alu 3 290 -20 2227 102 7 0 chr3 57264383 57264677 -170259901 + AluSx SINE Alu 2 297 -15 1322 98 23 6 chr3 57265099 57265301 -170259277 + AluSq SINE Alu 108 312 0 1866 111 44 0 chr3 57265326 57265578 -170259000 + AluSx SINE Alu 11 273 -39 903 200 0 24 chr3 57265669 57265839 -170258739 + AluJb SINE Alu 129 294 -18 612 269 77 0 chr3 57265946 57266102 -170258476 - MER58A DNA MER1_type -55 169 2 187 314 97 65 chr3 57266689 57266813 -170257765 - L2 LINE L2 -11 3261 3134 2310 105 3 0 chr3 57266886 57267182 -170257396 - AluSc SINE Alu -12 297 1 2009 118 0 7 chr3 57267182 57267461 -170257117 - AluSq SINE Alu -13 300 24 1565 79 82 64 chr3 57267584 57267707 -170256871 - L1PA8 LINE L1 0 6172 6053 2296 93 3 3 chr3 57267707 57268008 -170256570 - AluSc SINE Alu -7 302 2 1565 79 82 64 chr3 57268008 57268151 -170256427 - L1PA8 LINE L1 -119 6053 5901 2212 111 3 3 chr3 57268154 57268461 -170256117 - AluSx SINE Alu -5 307 1 182 61 0 30 chr3 57268470 57268503 -170256075 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2187 70 0 0 chr3 57268505 57268764 -170255814 - AluY SINE Alu -52 259 1 2052 145 0 7 chr3 57268782 57269092 -170255486 - AluSx SINE Alu -4 308 1 2178 102 14 0 chr3 57269117 57269411 -170255167 + AluSp SINE Alu 1 298 -15 2392 76 0 16 chr3 57269423 57269727 -170254851 - AluY SINE Alu -12 299 1 2292 79 7 33 chr3 57269727 57270032 -170254546 - AluSx SINE Alu -15 297 1 1635 189 26 10 chr3 57270032 57270345 -170254233 + LTR32 LTR ERVL 32 349 -122 2383 107 0 0 chr3 57270390 57270699 -170253879 - AluSg SINE Alu -1 309 1 358 164 0 0 chr3 57270725 57270786 -170253792 + LTR32 LTR ERVL 317 377 -94 229 169 62 15 chr3 57270788 57270853 -170253725 - MADE1 DNA Mariner -2 78 11 * 545 150 0 20 chr3 57270829 57270929 -170253649 + LTR32 LTR ERVL 374 471 0 308 253 81 61 chr3 57271014 57271113 -170253465 + L2 LINE L2 3211 3311 -2 6822 54 16 49 chr3 57271425 57272411 -170252167 - SVA Other Other 0 1386 433 1254 60 0 21 chr3 57272428 57272763 -170251815 - SVA Other Other -520 866 665 6000 59 27 56 chr3 57272780 57273661 -170250917 - SVA Other Other -520 866 11 2017 138 3 14 chr3 57273922 57274219 -170250359 + AluJb SINE Alu 1 294 -18 207 246 29 0 chr3 57274527 57274596 -170249982 + (TA)n Simple_repeat Simple_repeat 1 71 0 2279 106 0 0 chr3 57274746 57275048 -170249530 + AluSq SINE Alu 1 302 0 2334 114 0 0 chr3 57275119 57275427 -170249151 - AluSx SINE Alu -4 308 1 2355 94 0 0 chr3 57275432 57275767 -170248811 - AluSg SINE Alu 0 310 1 2603 50 0 3 chr3 57275767 57276065 -170248513 - AluY SINE Alu -13 298 2 1673 151 29 0 chr3 57276075 57276354 -170248224 - AluJo SINE Alu -17 295 9 232 230 27 40 chr3 57278598 57278672 -170245906 + MIR SINE MIR 190 262 0 2053 155 3 3 chr3 57280048 57280358 -170244220 + AluSx SINE Alu 1 310 -2 335 253 101 0 chr3 57280382 57280481 -170244097 - MIR SINE MIR -36 226 118 889 131 0 0 chr3 57280535 57280665 -170243913 + FLAM_C SINE Alu 1 130 -3 410 141 0 0 chr3 57280710 57280781 -170243797 - AluSp/q SINE Alu -7 306 236 968 129 0 0 chr3 57280782 57280914 -170243664 + AluSg/x SINE Alu 165 296 -16 2250 93 10 13 chr3 57280920 57281222 -170243356 + AluY SINE Alu 1 301 -10 735 111 9 9 chr3 57281239 57281347 -170243231 + FLAM_C SINE Alu 21 128 -15 721 139 117 11 chr3 57281738 57281918 -170242660 - MER46B DNA MER2_type -1 235 37 2148 64 79 7 chr3 57281918 57282198 -170242380 - AluY SINE Alu -11 300 1 932 181 93 42 chr3 57282240 57282455 -170242123 - AluJo SINE Alu 0 312 87 777 143 50 7 chr3 57282456 57282596 -170241982 - MER46B DNA MER2_type -215 21 1 2216 118 0 13 chr3 57282677 57282982 -170241596 + AluSx SINE Alu 1 301 -11 200 298 165 33 chr3 57283499 57283620 -170240958 + L2 LINE L2 3133 3269 -3 1770 183 7 0 chr3 57283969 57284254 -170240324 + AluJb SINE Alu 1 287 -25 1580 174 0 53 chr3 57284351 57284650 -170239928 - AluJo SINE Alu -12 300 18 2096 81 0 4 chr3 57284874 57285132 -170239446 + AluY SINE Alu 1 257 -54 1544 195 37 3 chr3 57285400 57285697 -170238881 - AluSx SINE Alu -5 307 1 2508 57 0 3 chr3 57285744 57286043 -170238535 - AluY SINE Alu -13 298 1 1084 166 0 0 chr3 57286154 57286317 -170238261 + FRAM SINE Alu 1 157 -19 570 257 59 50 chr3 57286717 57286757 -170237821 + MIR SINE MIR 53 91 -171 2319 105 13 0 chr3 57286757 57287061 -170237517 - AluSx SINE Alu -4 308 1 570 257 59 50 chr3 57287061 57287222 -170237356 + MIR SINE MIR 91 256 -6 21 0 0 0 chr3 57287762 57287783 -170236795 + AT_rich Low_complexity Low_complexity 1 21 0 763 173 24 18 chr3 57287993 57288161 -170236417 + L1M4 LINE L1 5044 5212 -934 363 290 70 23 chr3 57288161 57288380 -170236198 + L1M4c LINE L1 14 495 -6080 226 270 34 0 chr3 57288667 57288756 -170235822 + L1M4c LINE L1 802 893 -5753 2418 80 0 3 chr3 57288757 57289057 -170235521 + AluSx SINE Alu 1 299 -13 657 184 0 46 chr3 57289067 57289130 -170235448 + L1M4c LINE L1 1862 1926 -4720 2544 56 0 34 chr3 57289130 57289450 -170235128 + AluY SINE Alu 1 309 -2 657 184 0 46 chr3 57289450 57289538 -170235040 + L1M4c LINE L1 1926 2006 -4640 1937 133 3 29 chr3 57289539 57289848 -170234730 + AluSg SINE Alu 3 303 -7 2079 105 17 14 chr3 57289977 57290273 -170234305 + AluSx SINE Alu 1 297 -15 1541 205 10 20 chr3 57290423 57290586 -170233992 - AluJo SINE Alu -13 299 139 2319 98 3 3 chr3 57290586 57290893 -170233685 - AluSc SINE Alu -2 307 1 1541 205 10 20 chr3 57290893 57291022 -170233556 - AluJo SINE Alu -173 139 10 2041 156 0 3 chr3 57291124 57291426 -170233152 + AluJb SINE Alu 1 301 -11 2004 126 42 0 chr3 57291579 57291864 -170232714 + AluSx SINE Alu 1 297 -15 1063 101 0 77 chr3 57291872 57292040 -170232538 + AluSg/x SINE Alu 142 296 -16 2257 118 3 0 chr3 57295513 57295818 -170228760 + AluSx SINE Alu 2 307 -5 1688 158 16 26 chr3 57296506 57296810 -170227768 + AluJo SINE Alu 1 301 -11 894 84 0 0 chr3 57297341 57297448 -170227130 + AluY SINE Alu 68 174 -137 1899 107 10 45 chr3 57298091 57298267 -170226311 - AluSx SINE Alu -1 311 147 2223 74 60 20 chr3 57298267 57298566 -170226012 - AluY SINE Alu 0 311 1 1899 107 10 45 chr3 57298566 57298680 -170225898 - AluSx SINE Alu -165 147 31 2362 116 3 0 chr3 57299817 57300128 -170224450 - AluSq SINE Alu 0 313 2 2359 97 0 0 chr3 57300570 57300869 -170223709 + AluSg SINE Alu 1 299 -11 2358 103 0 0 chr3 57301206 57301516 -170223062 - AluY SINE Alu -1 310 1 22 35 0 0 chr3 57301964 57301993 -170222585 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 57302000 57302021 -170222557 + AT_rich Low_complexity Low_complexity 1 21 0 2344 94 3 0 chr3 57302074 57302371 -170222207 + AluSg SINE Alu 1 298 -12 422 268 62 38 chr3 57303101 57303310 -170221268 - L1ME3 LINE L1 -8 6154 5941 1291 160 21 71 chr3 57303370 57303576 -170221002 - L1MB7 LINE L1 -47 6137 5947 1604 104 42 29 chr3 57303576 57303817 -170220761 - AluSq SINE Alu -69 244 1 1291 160 21 71 chr3 57303817 57303891 -170220687 - L1MB7 LINE L1 -237 5947 5871 195 42 0 0 chr3 57304201 57304225 -170220353 + (T)n Simple_repeat Simple_repeat 1 24 0 2291 83 0 39 chr3 57304266 57304578 -170220000 + AluY SINE Alu 1 300 -11 2057 132 6 19 chr3 57304976 57305287 -170219291 - AluSx SINE Alu -5 307 1 1163 165 4 81 chr3 57306780 57307016 -170217562 + AluJo SINE Alu 86 303 -9 2187 119 0 3 chr3 57307023 57307317 -170217261 + AluSx SINE Alu 6 298 -14 1997 111 18 4 chr3 57309646 57309925 -170214653 + AluSx SINE Alu 15 297 -15 201 39 0 0 chr3 57310585 57310611 -170213967 + (GA)n Simple_repeat Simple_repeat 1 26 0 189 0 0 0 chr3 57311205 57311226 -170213352 + (ATTG)n Simple_repeat Simple_repeat 2 22 0 1482 91 0 11 chr3 57311239 57311425 -170213153 + AluSx SINE Alu 1 184 -128 860 189 7 0 chr3 57311425 57311568 -170213010 - AluJb SINE Alu -90 222 79 2338 68 24 3 chr3 57311607 57311903 -170212675 + AluSp SINE Alu 1 302 -11 262 88 0 53 chr3 57316411 57316468 -170208110 + (CCCCG)n Simple_repeat Simple_repeat 1 54 0 2168 121 3 3 chr3 57319857 57320162 -170204416 + AluSq SINE Alu 1 305 -8 2028 123 33 0 chr3 57320996 57321298 -170203280 - AluSx SINE Alu 0 312 1 2254 158 40 22 chr3 57321423 57321784 -170202794 + LTR32 LTR ERVL 15 368 -103 2024 130 0 7 chr3 57321784 57322083 -170202495 - AluSx SINE Alu -15 297 1 2254 158 40 22 chr3 57322083 57322111 -170202467 + LTR32 LTR ERVL 368 394 -77 2273 105 0 3 chr3 57322111 57322424 -170202154 - AluSq SINE Alu -1 312 1 2254 158 40 22 chr3 57322424 57322482 -170202096 + LTR32 LTR ERVL 394 471 0 1798 139 23 13 chr3 57323107 57323409 -170201169 - AluJo SINE Alu -3 309 5 315 122 0 0 chr3 57323528 57323577 -170201001 + (CA)n Simple_repeat Simple_repeat 2 50 0 2097 122 3 22 chr3 57324159 57324471 -170200107 - AluSq SINE Alu -7 306 1 1095 81 0 0 chr3 57324471 57324607 -170199971 - AluSq/x SINE Alu -177 136 1 233 289 13 26 chr3 57327826 57327902 -170196676 - MIR SINE MIR -109 153 79 185 292 28 28 chr3 57328415 57328487 -170196091 + L2 LINE L2 3138 3209 -63 238 289 39 70 chr3 57332640 57332796 -170191782 + L2 LINE L2 2977 3127 -145 258 336 49 0 chr3 57333314 57333428 -170191150 - MIR SINE MIR -29 233 114 449 175 21 0 chr3 57333551 57333648 -170190930 + CT-rich Low_complexity Low_complexity 1 99 0 413 334 98 30 chr3 57333648 57333662 -170190916 - HAL1 LINE L1 -1205 1302 1290 2237 109 0 3 chr3 57333662 57333974 -170190604 - AluY SINE Alu 0 311 1 413 334 98 30 chr3 57333974 57334212 -170190366 - HAL1 LINE L1 -1217 1290 1070 2130 101 40 0 chr3 57334212 57334510 -170190068 - AluSx SINE Alu -2 310 1 413 334 98 30 chr3 57334510 57334666 -170189912 - HAL1 LINE L1 -1437 1070 900 2130 132 3 0 chr3 57334666 57334976 -170189602 - AluSx SINE Alu -1 311 1 413 334 98 30 chr3 57334976 57334999 -170189579 - HAL1 LINE L1 -1607 900 880 2380 70 0 3 chr3 57335092 57335394 -170189184 - AluY SINE Alu -8 303 3 2230 89 0 23 chr3 57335396 57335698 -170188880 - AluSc SINE Alu -14 295 1 2341 92 3 0 chr3 57336044 57336349 -170188229 - AluSp SINE Alu -6 307 2 232 313 73 0 chr3 57336381 57336477 -170188101 - L2 LINE L2 -246 3026 2924 2123 104 7 3 chr3 57337806 57338104 -170186474 + AluSx SINE Alu 1 299 -13 2301 100 3 0 chr3 57338104 57338413 -170186165 + AluSg SINE Alu 1 310 0 250 333 0 31 chr3 57340391 57340487 -170184091 - L3b LINE CR1 -217 1366 1274 795 290 104 29 chr3 57340546 57340960 -170183618 - L2 LINE L2 -18 3295 2851 1118 169 0 5 chr3 57340988 57341172 -170183406 - AluJb SINE Alu -4 308 126 2012 123 0 17 chr3 57341174 57341476 -170183102 - AluSx SINE Alu -15 297 1 261 253 63 11 chr3 57341477 57341572 -170183006 - L2 LINE L2 -528 2786 2687 2352 94 0 0 chr3 57341644 57341953 -170182625 + AluY SINE Alu 1 309 -2 207 171 0 0 chr3 57342441 57342476 -170182102 + (CA)n Simple_repeat Simple_repeat 2 36 0 345 289 199 14 chr3 57342642 57342853 -170181725 - L2 LINE L2 -171 3101 2852 1319 91 19 0 chr3 57344792 57345002 -170179576 - Tigger1 DNA MER2_type -5 2413 2200 730 137 46 0 chr3 57344998 57345129 -170179449 - Tigger1 DNA MER2_type -2279 139 3 * 313 396 45 24 chr3 57346009 57346297 -170178281 + HAL1 LINE L1 982 1275 -1232 28 48 0 0 chr3 57346943 57346985 -170177593 + GC_rich Low_complexity Low_complexity 1 42 0 271 130 13 65 chr3 57347056 57347133 -170177445 + (CGGGG)n Simple_repeat Simple_repeat 5 77 0 29 28 0 0 chr3 57347652 57347688 -170176890 + GC_rich Low_complexity Low_complexity 1 36 0 324 147 21 21 chr3 57349456 57349551 -170175027 + CT-rich Low_complexity Low_complexity 4 98 0 232 197 66 0 chr3 57349696 57349757 -170174821 + CT-rich Low_complexity Low_complexity 1 65 0 200 333 0 0 chr3 57351053 57351116 -170173462 - L3b LINE CR1 -186 1397 1335 281 292 73 0 chr3 57353454 57353550 -170171028 - MIR SINE MIR -67 141 39 211 261 46 0 chr3 57353713 57353778 -170170800 + L2 LINE L2 2924 2991 -281 290 203 0 72 chr3 57353811 57353880 -170170698 - L2 LINE L2 -32 3240 3177 180 0 0 0 chr3 57354245 57354265 -170170313 + (CCCTG)n Simple_repeat Simple_repeat 1 20 0 366 303 20 0 chr3 57356778 57356877 -170167701 + MIR SINE MIR 55 155 -107 312 337 0 0 chr3 57356954 57357046 -170167532 + MIR SINE MIR 107 198 -64 233 304 13 13 chr3 57358210 57358289 -170166289 + C-rich Low_complexity Low_complexity 1 79 0 2302 99 0 0 chr3 57365325 57365629 -170158949 + AluSg SINE Alu 1 304 -6 1079 165 0 0 chr3 57365629 57365805 -170158773 + AluSg/x SINE Alu 135 310 0 206 213 66 33 chr3 57365837 57365898 -170158680 + MIR3 SINE MIR 112 174 -34 705 241 20 36 chr3 57366555 57366750 -170157828 + MIR SINE MIR 50 241 -21 323 129 0 0 chr3 57369811 57369873 -170154705 - MER63B DNA MER1_type -43 392 331 922 126 7 0 chr3 57369873 57370008 -170154570 + AluSq/x SINE Alu 1 136 -176 2322 91 0 0 chr3 57370093 57370391 -170154187 + AluSx SINE Alu 1 298 -14 8108 114 33 45 chr3 57370391 57370572 -170154006 - Tigger1 DNA MER2_type -965 1453 1271 2233 101 0 3 chr3 57370572 57370869 -170153709 + AluSx SINE Alu 1 296 -16 8108 114 33 45 chr3 57370869 57370954 -170153624 - Tigger1 DNA MER2_type -1147 1271 1187 2347 64 30 3 chr3 57370954 57371252 -170153326 - AluY SINE Alu -1 310 5 8108 114 33 45 chr3 57371252 57371450 -170153128 - Tigger1 DNA MER2_type -1231 1187 988 2017 149 0 0 chr3 57371450 57371759 -170152819 - AluSx SINE Alu -3 309 1 8108 114 33 45 chr3 57371759 57372271 -170152307 - Tigger1 DNA MER2_type -1430 988 472 1762 142 25 44 chr3 57372271 57372589 -170151989 - AluSx SINE Alu 0 312 1 8108 114 33 45 chr3 57372589 57372918 -170151660 - Tigger1 DNA MER2_type -1946 472 161 2311 102 0 0 chr3 57372918 57373221 -170151357 + AluSx SINE Alu 1 303 -9 8108 114 33 45 chr3 57373221 57373378 -170151200 - Tigger1 DNA MER2_type -2257 161 4 2126 114 0 19 chr3 57373443 57373758 -170150820 - AluSc SINE Alu 0 309 1 1935 139 7 0 chr3 57373758 57374053 -170150525 - AluSx SINE Alu -15 297 1 957 204 25 38 chr3 57374053 57374293 -170150285 - MER63B DNA MER1_type -199 237 1 353 320 68 24 chr3 57376457 57376663 -170147915 - L2 LINE L2 -1322 1992 1778 1917 170 13 0 chr3 57379278 57379584 -170144994 + AluSx SINE Alu 1 310 -2 227 54 27 0 chr3 57380308 57380345 -170144233 + (TA)n Simple_repeat Simple_repeat 2 39 0 246 392 0 13 chr3 57382263 57382416 -170142162 + (CA)n Simple_repeat Simple_repeat 2 152 0 2140 104 10 10 chr3 57382464 57382771 -170141807 + AluSc SINE Alu 1 307 -2 2318 80 3 3 chr3 57382771 57383072 -170141506 + AluY SINE Alu 1 301 -10 267 342 164 20 chr3 57383247 57383399 -170141179 + MIR SINE MIR 65 238 -24 31 44 0 0 chr3 57385801 57385846 -170138732 + GC_rich Low_complexity Low_complexity 1 45 0 898 187 41 9 chr3 57389085 57389304 -170135274 - MER96B DNA MER1_type? 0 417 192 3674 174 23 30 chr3 57389347 57389898 -170134680 - L1MB3 LINE L1 -16 6167 5614 2230 91 0 19 chr3 57389898 57390207 -170134371 - AluSc SINE Alu -6 303 1 3674 174 23 30 chr3 57390207 57390223 -170134355 - L1MB3 LINE L1 -569 5614 5599 2069 104 14 3 chr3 57390223 57390538 -170134040 - AluSp SINE Alu 0 313 1 2137 112 7 0 chr3 57390540 57390827 -170133751 - AluSx SINE Alu -23 289 1 3674 174 23 30 chr3 57390827 57390951 -170133627 - L1MB3 LINE L1 -585 5598 5477 1120 120 17 17 chr3 57390952 57391107 -170133471 - AluSg/x SINE Alu -22 288 131 2363 86 3 0 chr3 57391107 57391408 -170133170 - AluSp SINE Alu -11 302 1 1120 120 17 17 chr3 57391408 57391427 -170133151 - AluSg/x SINE Alu -178 132 114 1026 135 6 0 chr3 57391427 57391676 -170132902 - L1MB3 LINE L1 -733 5447 5197 2165 99 7 0 chr3 57391809 57392102 -170132476 - AluSp SINE Alu -18 295 1 22 43 0 21 chr3 57392180 57392209 -170132369 + AT_rich Low_complexity Low_complexity 1 30 -16 1784 107 52 0 chr3 57392209 57392480 -170132098 + AluSx SINE Alu 1 285 -27 22 43 0 21 chr3 57392480 57392497 -170132081 + AT_rich Low_complexity Low_complexity 30 46 0 2615 51 0 0 chr3 57392497 57392847 -170131731 + AluY SINE Alu 1 350 0 271 318 94 26 chr3 57394895 57395087 -170129491 - L2 LINE L2 -219 3053 2849 39 0 0 0 chr3 57397337 57397376 -170127202 + GC_rich Low_complexity Low_complexity 1 39 0 1907 173 0 10 chr3 57399438 57399751 -170124827 - AluSx SINE Alu -2 310 1 219 214 0 0 chr3 57399753 57399795 -170124783 - L2 LINE L2 -5 3267 3226 2319 104 0 0 chr3 57400387 57400696 -170123882 - AluSx SINE Alu -3 309 1 301 271 41 12 chr3 57400712 57400882 -170123696 + (TCTG)n Simple_repeat Simple_repeat 1 175 0 2509 58 0 3 chr3 57401500 57401812 -170122766 + AluY SINE Alu 1 311 0 189 338 50 0 chr3 57403151 57403231 -170121347 - MIR SINE MIR -83 125 42 336 292 50 37 chr3 57403536 57403697 -170120881 + L2 LINE L2 2897 3059 -213 2382 71 6 3 chr3 57403709 57404020 -170120558 - AluSp SINE Alu 0 313 2 308 145 0 13 chr3 57407962 57408038 -170116540 + (GGGTG)n Simple_repeat Simple_repeat 3 77 0 2165 88 0 7 chr3 57408889 57409205 -170115373 - AluSg SINE Alu 0 314 1 238 272 7 116 chr3 57409209 57409356 -170115222 - MIR SINE MIR -115 147 17 341 291 34 43 chr3 57411321 57411478 -170113100 - MIR SINE MIR -31 177 13 410 294 124 0 chr3 57411617 57411794 -170112784 - MLT1K LTR MaLR -9 579 381 181 252 96 96 chr3 57412559 57412694 -170111884 - MIR3 SINE MIR -37 171 37 1879 143 0 31 chr3 57414678 57415005 -170109573 + AluJb SINE Alu 1 318 0 2338 89 0 3 chr3 57415011 57415325 -170109253 + AluSp SINE Alu 1 313 0 580 253 28 72 chr3 57415561 57415810 -170108768 - L2 LINE L2 0 3313 3076 1718 167 0 20 chr3 57415833 57416132 -170108446 - AluJo SINE Alu -18 294 2 1408 291 183 22 chr3 57416139 57416490 -170108088 - L2 LINE L2 -605 2709 2416 2215 88 10 3 chr3 57416490 57416787 -170107791 + AluSg SINE Alu 1 299 -11 1408 291 183 22 chr3 57416787 57417238 -170107340 - L2 LINE L2 -898 2416 1778 2169 87 11 0 chr3 57417285 57417561 -170107017 + AluSg SINE Alu 1 279 -31 1900 109 61 17 chr3 57417861 57418155 -170106423 + AluSx SINE Alu 1 307 -5 2432 35 0 0 chr3 57418747 57419032 -170105546 - AluY SINE Alu -13 298 14 206 274 17 51 chr3 57419483 57419600 -170104978 + G-rich Low_complexity Low_complexity 5 117 0 2158 81 14 7 chr3 57420408 57420703 -170103875 + AluSx SINE Alu 7 303 -9 267 292 215 0 chr3 57420704 57420923 -170103655 + L2 LINE L2 2712 2977 -337 357 363 155 24 chr3 57421660 57422073 -170102505 + L2 LINE L2 2804 3270 -2 202 250 0 0 chr3 57423092 57423136 -170101442 + MIR SINE MIR 109 152 -56 219 36 0 0 chr3 57423400 57423428 -170101150 + (ATTG)n Simple_repeat Simple_repeat 2 29 0 2026 115 7 0 chr3 57423428 57423707 -170100871 - AluSc SINE Alu -28 281 1 971 135 0 0 chr3 57424047 57424180 -170100398 + AluJo/FLAM SINE Alu 1 133 -169 2168 109 3 0 chr3 57424181 57424475 -170100103 + AluSx SINE Alu 1 295 -17 586 284 19 34 chr3 57424483 57424734 -170099844 - MIR SINE MIR -1 261 16 393 335 90 0 chr3 57424754 57424909 -170099669 - L2 LINE L2 -525 2789 2621 1196 144 0 0 chr3 57426022 57426195 -170098383 - AluSg/x SINE Alu -6 306 134 2147 75 31 0 chr3 57426195 57426489 -170098089 - AluY SINE Alu -8 303 1 2051 114 13 7 chr3 57426489 57426785 -170097793 - AluSp SINE Alu -13 300 1 327 242 11 21 chr3 57427209 57427304 -170097274 + CT-rich Low_complexity Low_complexity 4 97 0 2303 73 0 13 chr3 57427449 57427752 -170096826 - AluSx SINE Alu -13 299 1 183 115 0 66 chr3 57428396 57428457 -170096121 + (CCGGG)n Simple_repeat Simple_repeat 3 59 0 251 294 143 25 chr3 57431558 57431677 -170092901 + L2 LINE L2 3139 3271 -1 211 301 135 8 chr3 57432376 57432509 -170092069 - L2 LINE L2 -218 3054 2905 2354 99 0 6 chr3 57432767 57433081 -170091497 + AluSx SINE Alu 1 312 0 287 298 12 0 chr3 57435789 57435873 -170088705 - MIR SINE MIR -89 173 89 2466 73 0 0 chr3 57436158 57436461 -170088117 - AluSx SINE Alu -9 303 1 2359 77 3 0 chr3 57437130 57437430 -170087148 - AluSp SINE Alu -12 301 1 293 263 161 8 chr3 57439244 57439362 -170085216 - MIR SINE MIR 0 262 127 2185 84 0 58 chr3 57440085 57440395 -170084183 + AluSx SINE Alu 1 292 -20 212 341 87 0 chr3 57441167 57441293 -170083285 - MIR3 SINE MIR -61 147 11 479 158 14 65 chr3 57441754 57441893 -170082685 - L1MB7 LINE L1 -80 6104 5973 445 338 22 0 chr3 57442222 57442358 -170082220 + MIR SINE MIR 103 241 -21 191 254 0 79 chr3 57442602 57442665 -170081913 - L2 LINE L2 -306 2966 2909 267 272 44 81 chr3 57442874 57442943 -170081635 - MER5A DNA MER1_type -52 137 74 2299 84 0 3 chr3 57442943 57443242 -170081336 - AluSq SINE Alu -14 299 2 267 272 44 81 chr3 57443242 57443308 -170081270 - MER5A DNA MER1_type -115 74 7 352 294 12 0 chr3 57443363 57443448 -170081130 + MIR SINE MIR 77 162 -100 2061 112 26 3 chr3 57444721 57445024 -170079554 + AluSx SINE Alu 1 310 -2 185 353 47 35 chr3 57445573 57445595 -170078983 - L2 LINE L2 -3 3269 3249 2249 65 0 0 chr3 57445595 57445870 -170078708 + AluY SINE Alu 1 275 -36 185 353 47 35 chr3 57445870 57445932 -170078646 - L2 LINE L2 -23 3249 3184 249 279 169 6 chr3 57446001 57446173 -170078405 - L2 LINE L2 -253 3019 2820 198 318 16 16 chr3 57446311 57446374 -170078204 - L2 LINE L2 -28 3244 3182 2318 75 16 7 chr3 57447901 57448206 -170076372 + AluSc SINE Alu 1 308 -1 2204 111 3 0 chr3 57454146 57454443 -170070135 + AluSx SINE Alu 1 298 -14 873 147 8 0 chr3 57454452 57454581 -170069997 + FLAM_C SINE Alu 1 130 -3 1966 152 0 13 chr3 57455350 57455660 -170068918 + AluJb SINE Alu 6 311 -1 1992 133 0 38 chr3 57456048 57456364 -170068214 + AluJb SINE Alu 1 304 -8 244 314 7 29 chr3 57460628 57460768 -170063810 + (CA)n Simple_repeat Simple_repeat 1 137 0 274 309 48 59 chr3 57463736 57464043 -170060535 - L2 LINE L2 -56 3216 2914 1299 176 86 21 chr3 57464126 57464405 -170060173 + AluJo SINE Alu 1 297 -15 1520 104 154 15 chr3 57464428 57464560 -170060018 + AluSx SINE Alu 5 117 -211 2198 117 0 0 chr3 57464560 57464858 -170059720 + AluSx SINE Alu 1 298 -14 1520 104 154 15 chr3 57464858 57465013 -170059565 + AluSx SINE Alu 117 328 0 205 254 190 10 chr3 57467261 57467357 -170057221 + MIR SINE MIR 34 143 -65 24 0 0 0 chr3 57468619 57468643 -170055935 + GC_rich Low_complexity Low_complexity 1 24 0 2308 73 16 0 chr3 57469402 57469705 -170054873 + AluY SINE Alu 1 308 -3 591 261 167 8 chr3 57469792 57469818 -170054760 - L2 LINE L2 -178 3135 3114 2214 102 0 0 chr3 57469818 57470111 -170054467 + AluSg SINE Alu 1 293 -17 591 261 167 8 chr3 57470111 57470348 -170054230 - L2 LINE L2 -199 3114 2830 303 325 32 8 chr3 57470556 57470679 -170053899 - MIR SINE MIR -90 172 47 2310 88 0 0 chr3 57472010 57472304 -170052274 - AluSg1 SINE Alu -15 294 1 2003 100 0 0 chr3 57472319 57472578 -170052000 - AluSx SINE Alu -45 267 9 402 128 0 186 chr3 57472669 57472718 -170051860 - AluJ/FLAM SINE Alu -224 88 66 2504 62 0 0 chr3 57472718 57473024 -170051554 - AluY SINE Alu -5 306 1 402 128 0 186 chr3 57473024 57473076 -170051502 - AluJ/FLAM SINE Alu -246 66 6 322 225 29 139 chr3 57473116 57473190 -170051388 - L1ME4a LINE L1 -2 6119 6038 2350 63 0 17 chr3 57473190 57473491 -170051087 - AluY SINE Alu -15 296 1 2250 96 0 7 chr3 57473492 57473793 -170050785 - AluSg SINE Alu -10 300 2 1944 142 0 49 chr3 57473802 57473988 -170050590 - AluJo SINE Alu -4 308 143 2158 102 0 3 chr3 57473988 57474283 -170050295 - AluY SINE Alu -17 294 1 1944 142 0 49 chr3 57474283 57474420 -170050158 - AluJo SINE Alu -169 143 1 322 225 29 139 chr3 57474420 57474506 -170050072 - L1ME4a LINE L1 -91 6030 5966 1983 146 3 0 chr3 57474734 57475036 -170049542 + AluSx SINE Alu 1 303 -9 2287 96 0 0 chr3 57475036 57475337 -170049241 + AluSc SINE Alu 1 301 -8 1933 124 13 13 chr3 57475341 57475477 -170049101 + AluSx SINE Alu 1 136 -176 2464 72 0 0 chr3 57475477 57475781 -170048797 + AluY SINE Alu 1 304 -7 1933 124 13 13 chr3 57475781 57475950 -170048628 + AluSx SINE Alu 135 306 -6 430 286 118 98 chr3 57475975 57476055 -170048523 + L1ME LINE L1 5281 5358 -763 2259 103 7 0 chr3 57476055 57476357 -170048221 + AluSx SINE Alu 1 304 -8 430 286 118 98 chr3 57476357 57476579 -170047999 + L1ME LINE L1 5358 5574 -547 1918 146 0 10 chr3 57476579 57476880 -170047698 + AluJb SINE Alu 1 298 -14 2267 102 0 0 chr3 57476885 57477180 -170047398 + AluSx SINE Alu 1 295 -17 2168 108 0 3 chr3 57477182 57477487 -170047091 + AluSg1 SINE Alu 1 304 -5 2047 130 0 3 chr3 57477488 57477795 -170046783 + AluSx SINE Alu 1 306 -6 430 286 118 98 chr3 57477795 57477877 -170046701 + L1ME LINE L1 5576 5697 -424 621 28 0 0 chr3 57477912 57477984 -170046594 + AluSp/q SINE Alu 222 293 -20 2319 80 10 0 chr3 57483139 57483441 -170041137 - AluSp SINE Alu -8 305 1 21 0 0 0 chr3 57484414 57484435 -170040143 + GC_rich Low_complexity Low_complexity 1 21 0 1659 152 21 28 chr3 57485991 57486150 -170038428 - AluJo SINE Alu -25 287 129 1749 144 14 11 chr3 57486150 57486434 -170038144 + AluJb SINE Alu 1 285 -27 1659 152 21 28 chr3 57486434 57486563 -170038015 - AluJo SINE Alu -183 129 1 350 320 209 17 chr3 57488056 57488353 -170036225 + L2 LINE L2 2919 3272 0 587 253 177 28 chr3 57492101 57492322 -170032256 + MIR SINE MIR 13 261 -1 381 338 7 29 chr3 57493340 57493466 -170031112 + L2 LINE L2 3178 3302 -11 2224 100 3 3 chr3 57493466 57493766 -170030812 + AluSx SINE Alu 2 301 -11 381 338 7 29 chr3 57493766 57493778 -170030800 + L2 LINE L2 3302 3313 0 2395 60 7 3 chr3 57493802 57494104 -170030474 + AluY SINE Alu 1 303 -8 325 175 25 12 chr3 57496029 57496109 -170028469 + ORSL DNA AcHobo 4 84 -191 2147 91 3 26 chr3 57496119 57496428 -170028150 + AluY SINE Alu 2 303 -8 378 0 0 0 chr3 57496428 57496470 -170028108 + (TA)n Simple_repeat Simple_repeat 2 43 0 1322 150 0 0 chr3 57496472 57496665 -170027913 + AluJo SINE Alu 23 215 -97 415 153 176 15 chr3 57496680 57496811 -170027767 + ORSL DNA AcHobo 124 275 0 276 83 375 14 chr3 57497109 57497181 -170027397 + MER4A LTR ERV1 1 98 -566 1442 161 3 76 chr3 57497242 57497365 -170027213 + MER4A LTR ERV1 372 502 -162 2548 58 0 0 chr3 57497365 57497674 -170026904 - AluY SINE Alu -2 309 1 2234 94 0 0 chr3 57497677 57497965 -170026613 - AluSg SINE Alu -22 288 1 1442 161 3 76 chr3 57497965 57498153 -170026425 + MER4A LTR ERV1 504 664 0 2367 117 66 33 chr3 57498155 57498703 -170025875 + MER4A-int LTR ERV1 1 609 -5989 2024 115 3 7 chr3 57498736 57499052 -170025526 + AluSx SINE Alu 1 312 0 1107 136 6 0 chr3 57499052 57499214 -170025364 + AluSg/x SINE Alu 132 294 -16 2081 125 16 0 chr3 57499216 57499521 -170025057 + AluSx SINE Alu 1 310 -2 2502 56 0 3 chr3 57499530 57499836 -170024742 + AluY SINE Alu 1 305 -6 327 241 26 26 chr3 57499847 57499930 -170024648 + MER4-int LTR ERV1 3205 3290 -3308 2331 71 3 3 chr3 57499930 57500226 -170024352 - AluY SINE Alu -15 296 1 327 241 26 26 chr3 57500226 57500258 -170024320 + MER4-int LTR ERV1 3289 3320 -3278 2001 144 0 0 chr3 57500266 57500558 -170024020 - AluSx SINE Alu -20 292 1 2134 70 44 0 chr3 57500567 57500866 -170023712 - AluY SINE Alu 0 311 1 2237 102 0 0 chr3 57500866 57501160 -170023418 - AluSg SINE Alu -16 294 1 2292 123 86 115 chr3 57501161 57501314 -170023264 + MER4-int LTR ERV1 4869 5025 -1306 2126 123 7 0 chr3 57501314 57501616 -170022962 + AluSx SINE Alu 2 305 -7 2292 123 86 115 chr3 57501616 57501820 -170022758 + MER4-int LTR ERV1 5025 5233 -1098 698 124 0 0 chr3 57501820 57501917 -170022661 + AluS SINE Alu 1 97 -215 2292 123 86 115 chr3 57501917 57502395 -170022183 + MER4-int LTR ERV1 5233 5761 -570 2243 83 3 10 chr3 57502397 57502697 -170021881 - AluY SINE Alu -13 298 1 6798 57 5 74 chr3 57502726 57503751 -170020827 - SVA Other Other 0 1386 433 1364 102 13 75 chr3 57503764 57504290 -170020288 - SVA Other Other -520 866 476 5174 81 45 10 chr3 57504314 57505096 -170019482 - SVA Other Other -520 866 58 398 20 20 0 chr3 57505096 57505147 -170019431 + (AGGGGG)n Simple_repeat Simple_repeat 5 56 0 2362 83 0 0 chr3 57505169 57505469 -170019109 - AluSg SINE Alu -10 300 1 1704 118 84 37 chr3 57505471 57505626 -170018952 + MER4A-int LTR ERV1 6222 6368 -230 2200 106 0 3 chr3 57505626 57505928 -170018650 - AluSp SINE Alu -10 303 3 1704 118 84 37 chr3 57505928 57506127 -170018451 + MER4A-int LTR ERV1 6368 6593 -5 281 44 22 22 chr3 57506165 57506210 -170018368 + MER4A LTR ERV1 54 98 -566 1431 142 8 70 chr3 57506210 57506577 -170018001 + MER4A LTR ERV1 262 664 0 1844 124 20 44 chr3 57507824 57507976 -170016602 - AluSx SINE Alu -21 291 148 2199 96 7 0 chr3 57507976 57508269 -170016309 - AluSg SINE Alu -13 297 3 1844 124 20 44 chr3 57508269 57508414 -170016164 - AluSx SINE Alu -164 148 1 262 288 50 86 chr3 57508694 57508833 -170015745 + L2 LINE L2 3180 3313 0 553 324 23 6 chr3 57511408 57511584 -170012994 + MIR SINE MIR 14 192 -70 23 0 0 0 chr3 57513241 57513264 -170011314 + GC_rich Low_complexity Low_complexity 1 23 0 218 222 37 0 chr3 57513542 57513596 -170010982 + (CCCGG)n Simple_repeat Simple_repeat 5 60 0 1927 135 3 7 chr3 57518760 57519049 -170005529 - AluSx SINE Alu -24 288 1 243 350 122 24 chr3 57520806 57520929 -170003649 + L2 LINE L2 3175 3309 -4 2207 89 7 7 chr3 57520978 57521281 -170003297 - AluSq SINE Alu -10 303 1 1912 124 31 14 chr3 57521282 57521573 -170003005 - AluSx SINE Alu -16 296 1 510 122 276 10 chr3 57521789 57521887 -170002691 + FLAM_C SINE Alu 1 124 -19 1778 167 7 23 chr3 57524636 57524942 -169999636 + AluJo SINE Alu 1 301 -11 2335 84 3 0 chr3 57524944 57525240 -169999338 + AluSp SINE Alu 1 297 -16 2163 107 0 10 chr3 57525612 57525911 -169998667 - AluSx SINE Alu -16 296 1 2102 114 0 3 chr3 57527089 57527379 -169997199 - AluSg1 SINE Alu -20 289 1 2034 147 0 6 chr3 57527438 57527750 -169996828 - AluSx SINE Alu -2 310 1 1819 160 35 0 chr3 57527750 57528037 -169996541 - AluSx SINE Alu -15 297 1 1064 128 0 0 chr3 57528040 57528189 -169996389 - AluSg/x SINE Alu -18 294 146 2187 92 0 0 chr3 57530429 57530711 -169993867 - AluSq SINE Alu -31 282 1 905 271 231 16 chr3 57530758 57531443 -169993135 + L2 LINE L2 1699 2530 -784 2283 92 0 10 chr3 57531486 57531800 -169992778 - AluSx SINE Alu -1 311 1 562 260 22 50 chr3 57531943 57532124 -169992454 - MER5B DNA MER1_type 0 178 3 2288 108 0 0 chr3 57536443 57536750 -169987828 - AluSq SINE Alu -6 307 1 214 303 236 39 chr3 57538163 57538361 -169986217 + L2 LINE L2 2461 2619 -695 2090 115 7 0 chr3 57538361 57538656 -169985922 + AluSx SINE Alu 1 297 -15 214 303 236 39 chr3 57538656 57538889 -169985689 + L2 LINE L2 2619 2977 -337 2017 113 10 17 chr3 57538977 57539270 -169985308 - AluSx SINE Alu -21 291 1 804 217 12 0 chr3 57539294 57539475 -169985103 - AluJo SINE Alu 0 302 120 257 288 129 38 chr3 57539504 57539636 -169984942 + L2 LINE L2 3167 3310 -3 284 213 190 25 chr3 57541238 57541366 -169983212 - MIR SINE MIR -59 149 20 272 291 73 12 chr3 57542245 57542410 -169982168 + L2 LINE L2 2836 3010 -262 2230 75 6 35 chr3 57544330 57544649 -169979929 + AluSx SINE Alu 1 310 -2 1274 116 11 0 chr3 57544653 57544843 -169979735 + AluSg/x SINE Alu 119 310 -2 204 40 0 0 chr3 57546732 57546757 -169977821 + (TGG)n Simple_repeat Simple_repeat 3 27 0 186 118 0 0 chr3 57550650 57550684 -169973894 + (CAG)n Simple_repeat Simple_repeat 2 35 0 311 315 39 31 chr3 57552093 57552223 -169972355 + MIR SINE MIR 34 164 -98 2342 77 3 0 chr3 57552630 57552927 -169971651 + AluSp SINE Alu 1 298 -15 619 143 42 171 chr3 57553103 57553204 -169971374 + MER53 DNA DNA 2 62 -127 1765 138 6 53 chr3 57553204 57553523 -169971055 - AluJo SINE Alu -8 304 1 619 143 42 171 chr3 57553523 57553637 -169970941 + MER53 DNA DNA 62 189 0 305 338 66 7 chr3 57553826 57553962 -169970616 + MIR SINE MIR 65 208 -54 2221 105 3 10 chr3 57554381 57554694 -169969884 - AluSx SINE Alu -1 311 1 225 0 0 0 chr3 57555598 57555623 -169968955 + (TG)n Simple_repeat Simple_repeat 2 26 0 201 81 0 54 chr3 57556759 57556796 -169967782 + (GGGTG)n Simple_repeat Simple_repeat 1 35 0 241 276 10 20 chr3 57557104 57557202 -169967376 + G-rich Low_complexity Low_complexity 4 100 0 22 56 0 0 chr3 57557377 57557413 -169967165 + GC_rich Low_complexity Low_complexity 1 36 0 260 278 21 21 chr3 57560777 57560874 -169963704 + MIR3 SINE MIR 58 154 -54 227 241 0 0 chr3 57560892 57560946 -169963632 + L2 LINE L2 2931 2984 -329 411 274 89 30 chr3 57561119 57561287 -169963291 - MER91A DNA MER1_type -15 181 4 212 258 237 11 chr3 57561398 57561491 -169963087 - L2 LINE L2 0 3313 3200 207 186 0 0 chr3 57562822 57562865 -169961713 + (CA)n Simple_repeat Simple_repeat 1 43 0 243 173 0 0 chr3 57563450 57563502 -169961076 + (TG)n Simple_repeat Simple_repeat 1 52 0 231 247 27 14 chr3 57563874 57563947 -169960631 + GA-rich Low_complexity Low_complexity 4 77 0 450 267 15 11 chr3 57565599 57565879 -169958699 + GA-rich Low_complexity Low_complexity 1 281 0 300 316 7 31 chr3 57565892 57566072 -169958506 + GA-rich Low_complexity Low_complexity 1 175 0 722 192 16 12 chr3 57566076 57566506 -169958072 + G-rich Low_complexity Low_complexity 1 432 0 203 297 0 14 chr3 57568042 57568116 -169956462 + CT-rich Low_complexity Low_complexity 5 77 0 1364 187 49 13 chr3 57569126 57569431 -169955147 + MER58B DNA MER1_type 23 338 -3 399 257 0 20 chr3 57572222 57572323 -169952255 - L2 LINE L2 -4 3309 3211 372 22 0 0 chr3 57574113 57574158 -169950420 + (CA)n Simple_repeat Simple_repeat 2 46 0 235 281 16 0 chr3 57574869 57574933 -169949645 + MIR3 SINE MIR 95 159 -49 228 273 30 15 chr3 57575651 57575717 -169948861 - L3b LINE CR1 -197 1386 1320 297 305 8 55 chr3 57579010 57579138 -169945440 - L3 LINE CR1 -43 1534 1413 182 298 18 0 chr3 57579625 57579682 -169944896 - MIR3 SINE MIR -52 156 99 196 352 55 0 chr3 57582247 57582338 -169942240 + MIR SINE MIR 2 97 -165 319 275 138 7 chr3 57585208 57585346 -169939232 + MIR SINE MIR 24 179 -83 245 297 76 8 chr3 57587404 57587522 -169937056 - MIR3 SINE MIR -72 136 11 319 317 34 34 chr3 57588435 57588640 -169935938 + L2 LINE L2 2640 2844 -470 252 251 171 62 chr3 57589615 57589765 -169934813 + MIR SINE MIR 13 176 -65 229 314 154 24 chr3 57590475 57590644 -169933934 + L2 LINE L2 3077 3267 -5 256 253 35 46 chr3 57590672 57590759 -169933819 + MIR SINE MIR 46 131 -131 266 354 69 8 chr3 57591752 57591882 -169932696 - MIR SINE MIR -97 165 28 907 103 8 0 chr3 57592980 57593106 -169931472 - FLAM_C SINE Alu -16 127 1 23 68 0 0 chr3 57593368 57593412 -169931166 + AT_rich Low_complexity Low_complexity 1 44 0 2001 104 19 41 chr3 57593827 57594144 -169930434 - AluSx SINE Alu -2 310 1 239 343 91 35 chr3 57595187 57595330 -169929248 + MIR3 SINE MIR 36 186 -22 352 314 174 31 chr3 57595786 57596143 -169928435 + L2 LINE L2 2813 3220 -52 310 235 102 10 chr3 57596794 57596892 -169927686 - L2 LINE L2 -1 3312 3206 205 300 0 0 chr3 57596903 57596963 -169927615 - L3b LINE CR1 -198 1385 1326 189 284 155 0 chr3 57597863 57597979 -169926599 - MIR SINE MIR -59 149 16 296 264 16 36 chr3 57598573 57598904 -169925674 + (CACCAT)n Simple_repeat Simple_repeat 1 324 0 227 313 131 0 chr3 57599761 57599860 -169924718 + MIR SINE MIR 110 221 -41 363 314 9 0 chr3 57600214 57600319 -169924259 - MIR SINE MIR -109 153 48 185 361 123 0 chr3 57601229 57601359 -169923219 + MIR SINE MIR 88 233 -29 376 320 34 14 chr3 57601701 57601848 -169922730 - MIR SINE MIR -70 192 43 220 393 57 7 chr3 57603741 57603881 -169920697 - MIR SINE MIR -95 167 21 2109 133 0 0 chr3 57605696 57605997 -169918581 + AluSx SINE Alu 1 301 -11 193 332 85 70 chr3 57607728 57607927 -169916651 + L2 LINE L2 3068 3269 -3 354 240 77 19 chr3 57608791 57608895 -169915683 + MIR SINE MIR 33 142 -66 424 304 78 34 chr3 57609853 57610057 -169914521 + L2 LINE L2 3101 3313 0 193 296 0 0 chr3 57610349 57610393 -169914185 + L2 LINE L2 3270 3313 0 226 367 84 19 chr3 57611168 57611383 -169913195 + L3b LINE CR1 1215 1443 -140 817 150 0 0 chr3 57611913 57612033 -169912545 + 5S rRNA rRNA 2 121 0 262 275 101 8 chr3 57614773 57614904 -169909674 - MIR SINE MIR -68 140 39 197 260 0 0 chr3 57615124 57615174 -169909404 + MIR SINE MIR 88 137 -71 187 275 100 18 chr3 57616162 57616329 -169908249 - MIR SINE MIR -66 142 3 201 330 121 65 chr3 57616656 57616871 -169907707 + L2 LINE L2 3045 3271 -1 396 325 10 39 chr3 57617408 57617614 -169906964 + L2 LINE L2 2914 3113 -159 200 341 89 16 chr3 57618244 57618367 -169906211 + MIR SINE MIR 16 147 -115 1009 204 19 0 chr3 57620227 57620433 -169904145 + MER20 DNA MER1_type 1 210 -9 538 288 49 15 chr3 57621042 57621079 -169903499 + MIR SINE MIR 32 66 -196 1807 159 3 3 chr3 57621079 57621374 -169903204 + AluSx SINE Alu 1 295 -17 538 288 49 15 chr3 57621374 57621541 -169903037 + MIR SINE MIR 66 243 -19 2188 54 13 70 chr3 57621602 57621916 -169902662 + AluY SINE Alu 1 296 -15 505 283 22 78 chr3 57621919 57622099 -169902479 - MER5B DNA MER1_type -8 170 1 413 271 51 0 chr3 57622651 57622769 -169901809 + L2 LINE L2 3148 3271 -1 307 327 127 7 chr3 57623598 57623748 -169900830 + MIR SINE MIR 17 184 -78 2065 143 13 0 chr3 57623834 57624142 -169900436 + AluSx SINE Alu 1 312 0 2152 128 27 19 chr3 57625117 57625483 -169899095 - L1MB7 LINE L1 -2 6182 5814 850 137 65 60 chr3 57625483 57625651 -169898927 - FRAM SINE Alu -8 168 1 189 0 0 0 chr3 57627266 57627287 -169897291 + (TG)n Simple_repeat Simple_repeat 1 21 0 216 97 0 0 chr3 57627424 57627455 -169897123 + (TG)n Simple_repeat Simple_repeat 1 31 0 202 281 0 16 chr3 57627617 57627681 -169896897 + GA-rich Low_complexity Low_complexity 5 67 0 198 256 77 26 chr3 57628189 57628267 -169896311 - MIR SINE MIR -120 142 61 243 232 72 0 chr3 57628701 57628770 -169895808 + MIR SINE MIR 97 170 -92 266 338 0 0 chr3 57630921 57630995 -169893583 + G-rich Low_complexity Low_complexity 5 78 0 319 291 83 14 chr3 57631064 57631240 -169893338 - MIR SINE MIR -37 171 17 199 303 0 30 chr3 57632038 57632104 -169892474 + L2 LINE L2 1353 1416 -1898 204 332 72 62 chr3 57632862 57633251 -169891327 - L2 LINE L2 -61 3211 2819 406 304 101 0 chr3 57633988 57634136 -169890442 + L3 LINE CR1 1343 1505 -72 264 246 18 0 chr3 57636394 57636451 -169888127 - MIR SINE MIR -116 146 89 297 183 73 61 chr3 57638429 57638511 -169886067 - MIR SINE MIR -71 191 109 2234 86 3 3 chr3 57643265 57643557 -169881021 - AluSq SINE Alu -21 292 1 334 325 42 14 chr3 57643959 57644106 -169880472 - MIR SINE MIR -65 143 34 840 217 52 9 chr3 57644268 57644498 -169880080 + LTR16A LTR ERVL 196 435 -15 679 338 84 19 chr3 57644666 57645131 -169879447 + HERV16 LTR ERVL 211 705 -4291 267 294 159 37 chr3 57645656 57645819 -169878759 - MIR SINE MIR -72 190 8 401 238 82 49 chr3 57648194 57648316 -169876262 - MIR SINE MIR -71 191 66 205 262 79 63 chr3 57648872 57648998 -169875580 - MIR3 SINE MIR -49 159 32 2119 120 0 0 chr3 57649099 57649420 -169875158 + AluSx SINE Alu 1 321 0 483 264 62 5 chr3 57650767 57650960 -169873618 + HAL1 LINE L1 48 251 -2256 201 39 0 0 chr3 57652221 57652247 -169872331 + (TAAA)n Simple_repeat Simple_repeat 1 26 0 1328 158 15 0 chr3 57652291 57652551 -169872027 + L1MD3 LINE L1 7707 7970 -25 326 194 48 0 chr3 57652551 57652613 -169871965 + L1MD3 LINE L1 7926 7990 -5 430 299 114 28 chr3 57652618 57652704 -169871874 + HAL1 LINE L1 958 1035 -1472 2501 60 0 0 chr3 57652704 57653006 -169871572 + AluY SINE Alu 1 302 -9 430 299 114 28 chr3 57653006 57653130 -169871448 + HAL1 LINE L1 1035 1186 -1321 1942 259 134 49 chr3 57653149 57653587 -169870991 + HAL1 LINE L1 1247 1646 -861 1917 97 47 72 chr3 57653587 57653907 -169870671 + AluSx SINE Alu 1 312 0 1942 259 134 49 chr3 57653907 57654233 -169870345 + HAL1 LINE L1 1646 1943 -564 1843 138 10 17 chr3 57654233 57654589 -169869989 + AluSx SINE Alu 1 312 0 1942 259 134 49 chr3 57654589 57654976 -169869602 + HAL1 LINE L1 1943 2497 -10 1324 170 18 0 chr3 57655431 57655649 -169868929 - AluJb SINE Alu -10 302 81 200 182 0 0 chr3 57658145 57658178 -169866400 + MIR SINE MIR 117 149 -113 288 77 0 0 chr3 57658389 57658428 -169866150 + (TG)n Simple_repeat Simple_repeat 1 39 0 549 0 0 0 chr3 57660512 57660573 -169864005 + (TG)n Simple_repeat Simple_repeat 1 61 0 2169 133 0 0 chr3 57660952 57661260 -169863318 - AluSx SINE Alu -4 308 1 379 287 30 0 chr3 57661745 57661846 -169862732 - MIR SINE MIR -78 184 81 239 379 34 40 chr3 57664580 57664757 -169859821 - L3b LINE CR1 -63 1520 1345 265 258 0 0 chr3 57666235 57666297 -169858281 + MIR SINE MIR 30 91 -117 184 336 74 33 chr3 57666494 57666616 -169857962 - MIR3 SINE MIR -45 163 37 206 250 77 0 chr3 57668787 57668839 -169855739 + MIR SINE MIR 68 123 -85 2415 78 0 0 chr3 57669051 57669360 -169855218 - AluY SINE Alu -2 309 1 278 284 69 17 chr3 57669361 57669477 -169855101 + MIR SINE MIR 88 209 -53 461 330 24 42 chr3 57670630 57670842 -169853736 - MIR SINE MIR 0 262 55 941 244 40 0 chr3 57670846 57671047 -169853531 - MER63A DNA MER1_type -1 209 1 192 330 87 29 chr3 57672196 57672299 -169852279 - MIR SINE MIR -88 174 66 229 289 64 17 chr3 57672385 57672480 -169852098 + MIR SINE MIR 80 173 -35 262 235 27 7 chr3 57672937 57673089 -169851489 + G-rich Low_complexity Low_complexity 1 155 0 1871 157 10 0 chr3 57673845 57674150 -169850428 + AluJb SINE Alu 1 308 -4 208 310 120 13 chr3 57674494 57674616 -169849962 + MIR SINE MIR 13 146 -62 258 282 28 0 chr3 57676013 57676084 -169848494 - MIR SINE MIR -109 153 81 625 257 215 40 chr3 57676105 57676882 -169847696 + L2 LINE L2 2251 3168 -145 269 346 109 0 chr3 57679181 57679282 -169845296 - MIR SINE MIR -113 149 38 266 308 173 45 chr3 57679986 57680298 -169844280 - L2 LINE L2 0 3272 2921 222 37 0 0 chr3 57680500 57680527 -169844051 + (TTCA)n Simple_repeat Simple_repeat 2 28 0 2266 91 0 3 chr3 57680823 57681131 -169843447 - AluY SINE Alu -4 307 1 242 325 0 12 chr3 57681156 57681236 -169843342 + L2 LINE L2 3194 3272 0 206 232 110 37 chr3 57681237 57681319 -169843259 - MIR SINE MIR -74 188 101 360 0 0 0 chr3 57681748 57681788 -169842790 + (CTGGGG)n Simple_repeat Simple_repeat 3 42 0 205 301 27 27 chr3 57682504 57682577 -169842001 - MER5B DNA MER1_type -5 173 101 251 375 111 28 chr3 57682835 57683088 -169841490 - L2 LINE L2 -9 3263 2990 255 313 102 0 chr3 57684586 57684714 -169839864 + MIR3 SINE MIR 48 188 -20 393 297 122 7 chr3 57684987 57685135 -169839443 + MIR SINE MIR 4 168 -94 854 248 81 0 chr3 57685363 57685621 -169838957 + MLT1L LTR MaLR 110 388 -227 212 0 36 0 chr3 57686795 57686823 -169837755 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1828 146 4 4 chr3 57686827 57687107 -169837471 - AluJb SINE Alu -32 280 1 191 300 29 14 chr3 57687840 57687910 -169836668 - MIR SINE MIR -60 148 78 258 406 0 6 chr3 57688375 57688594 -169835984 + (CA)n Simple_repeat Simple_repeat 1 217 0 349 240 25 58 chr3 57688815 57688936 -169835642 - MIR SINE MIR -83 179 63 254 232 0 0 chr3 57689395 57689451 -169835127 - MIR SINE MIR -78 130 75 259 299 52 0 chr3 57691006 57691107 -169833471 + MIR SINE MIR 45 149 -65 247 304 17 9 chr3 57695384 57695499 -169829079 + G-rich Low_complexity Low_complexity 1 116 0 198 0 0 0 chr3 57695598 57695620 -169828958 + (CGG)n Simple_repeat Simple_repeat 2 23 0 1852 196 112 48 chr3 57697431 57697906 -169826672 + MLT1D LTR MaLR 1 505 0 365 176 20 59 chr3 57697920 57698022 -169826556 + MLT1D-int LTR MaLR 16 113 -1258 185 270 16 16 chr3 57698350 57698413 -169826165 + MIR SINE MIR 83 145 -63 201 243 16 87 chr3 57698807 57698992 -169825586 + C-rich Low_complexity Low_complexity 1 172 0 233 340 113 0 chr3 57699382 57699488 -169825090 - L3 LINE CR1 -108 1469 1352 241 308 76 60 chr3 57701470 57701655 -169822923 + L2 LINE L2 2920 3107 -165 2117 118 0 0 chr3 57701715 57702004 -169822574 - AluSc SINE Alu -20 289 1 1949 137 0 44 chr3 57702125 57702446 -169822132 + AluSx SINE Alu 1 307 -5 196 332 126 58 chr3 57702500 57702690 -169821888 + MIR SINE MIR 46 248 -14 290 280 23 31 chr3 57703400 57703521 -169821057 - MIR SINE MIR -58 150 29 325 269 51 51 chr3 57703921 57704077 -169820501 - L2 LINE L2 -208 3064 2909 313 240 117 52 chr3 57704492 57704646 -169819932 - MIR3 SINE MIR -37 171 8 244 279 16 0 chr3 57705242 57705303 -169819275 - MIR SINE MIR -110 152 91 258 272 127 35 chr3 57706875 57706988 -169817590 - MIR SINE MIR -58 150 23 2374 83 3 0 chr3 57707817 57708119 -169816459 + AluSp SINE Alu 1 303 -10 382 309 53 40 chr3 57708697 57708849 -169815729 - MIR SINE MIR -74 188 35 249 302 0 75 chr3 57709613 57709719 -169814859 + MIR SINE MIR 85 182 -80 183 328 17 0 chr3 57710461 57710519 -169814059 + MIR SINE MIR 89 147 -61 309 304 0 0 chr3 57710865 57710944 -169813634 + C-rich Low_complexity Low_complexity 4 82 0 209 301 43 32 chr3 57712223 57712316 -169812262 - MIR3 SINE MIR -11 197 104 216 0 0 0 chr3 57713116 57713140 -169811438 + (T)n Simple_repeat Simple_repeat 1 24 0 221 348 70 9 chr3 57713211 57713326 -169811252 + MIR3 SINE MIR 38 159 -49 950 340 26 8 chr3 57714435 57714812 -169809766 - MLT1I LTR MaLR -1 408 25 7891 56 12 0 chr3 57714967 57715924 -169808654 + LTR5 LTR ERVK 1 969 0 193 286 53 111 chr3 57716480 57716669 -169807909 - MIR3 SINE MIR -21 187 10 1968 130 44 0 chr3 57718091 57718384 -169806194 + AluSx SINE Alu 1 306 -6 395 264 17 10 chr3 57718823 57718955 -169805623 + MIR SINE MIR 10 145 -63 279 119 0 0 chr3 57719637 57719679 -169804899 + 5S rRNA rRNA 1 42 -79 221 303 71 0 chr3 57719799 57719898 -169804680 + MIR SINE MIR 37 142 -66 21 0 0 0 chr3 57720923 57720944 -169803634 + AT_rich Low_complexity Low_complexity 1 21 0 190 310 17 0 chr3 57723558 57723616 -169800962 - MIR3 SINE MIR -48 160 102 324 333 82 13 chr3 57723891 57724050 -169800528 + MIR SINE MIR 52 221 -41 376 333 7 20 chr3 57724878 57725028 -169799550 + L2 LINE L2 2915 3062 -210 38 39 0 0 chr3 57725516 57725568 -169799010 + GC_rich Low_complexity Low_complexity 1 52 0 24 32 0 0 chr3 57725612 57725643 -169798935 + GC_rich Low_complexity Low_complexity 1 31 0 266 289 21 10 chr3 57725962 57726059 -169798519 - L2 LINE L2 -5 3267 3170 424 312 83 0 chr3 57726202 57726359 -169798219 + MIR SINE MIR 83 252 -10 267 227 235 25 chr3 57726761 57726880 -169797698 + MIR SINE MIR 47 190 -72 402 301 46 7 chr3 57727071 57727224 -169797354 - MIR3 SINE MIR -27 181 23 186 314 23 12 chr3 57727231 57727317 -169797261 - L2 LINE L2 -279 2993 2907 181 305 76 9 chr3 57729423 57729528 -169795050 + L2 LINE L2 1817 1928 -1386 190 320 57 25 chr3 57729846 57729968 -169794610 + L2 LINE L2 2842 2967 -305 384 268 123 6 chr3 57729981 57730160 -169794418 - MLT1K LTR MaLR -26 562 363 237 275 29 0 chr3 57730230 57730299 -169794279 - MLT1K LTR MaLR -363 225 155 272 241 51 38 chr3 57730461 57730540 -169794038 + L2 LINE L2 3138 3217 -55 218 260 164 14 chr3 57730554 57730627 -169793951 - MIR SINE MIR -60 148 65 253 328 101 51 chr3 57730875 57731250 -169793328 + L2 LINE L2 2879 3272 0 204 135 0 0 chr3 57731975 57732012 -169792566 + (CA)n Simple_repeat Simple_repeat 1 37 0 189 74 0 0 chr3 57732082 57732109 -169792469 + (CA)n Simple_repeat Simple_repeat 1 27 0 328 314 43 29 chr3 57732957 57733097 -169791481 - MIR SINE MIR -77 185 44 2347 81 13 0 chr3 57733268 57733576 -169791002 + AluSp SINE Alu 1 312 -1 1048 237 33 25 chr3 57733612 57734092 -169790486 + MER39 LTR ERV1 69 687 -20 272 248 64 9 chr3 57734446 57734555 -169790023 + GA-rich Low_complexity Low_complexity 4 118 0 215 185 0 19 chr3 57734568 57734622 -169789956 + GA-rich Low_complexity Low_complexity 1 53 0 257 368 37 15 chr3 57735467 57735603 -169788975 + L2 LINE L2 3133 3271 -1 261 297 180 49 chr3 57736283 57736633 -169787945 + L2 LINE L2 2827 3222 -91 1691 196 0 16 chr3 57738371 57738687 -169785891 + AluJb SINE Alu 1 311 -1 293 319 75 26 chr3 57738973 57739239 -169785339 + L1MC4a LINE L1 4891 5169 -977 2183 116 0 0 chr3 57739254 57739555 -169785023 + AluSg SINE Alu 1 301 -9 936 262 141 18 chr3 57739599 57740103 -169784475 + L1MC4a LINE L1 5264 5829 -1979 301 292 83 7 chr3 57740228 57740372 -169784206 + LTR33 LTR ERVL 58 212 -309 249 341 24 0 chr3 57740387 57740472 -169784106 + L2 LINE L2 2692 2778 -536 2213 110 0 7 chr3 57740495 57740803 -169783775 - AluSx SINE Alu -6 306 1 257 250 17 0 chr3 57743394 57743454 -169781124 - L2 LINE L2 -2 3311 3251 239 0 0 31 chr3 57743468 57743500 -169781078 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 750 196 40 7 chr3 57743541 57743638 -169780940 - AluJb SINE Alu -92 220 115 234 0 0 0 chr3 57743638 57743664 -169780914 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 750 196 40 7 chr3 57743664 57743714 -169780864 - AluJb SINE Alu -197 115 68 411 248 155 16 chr3 57743748 57743877 -169780701 - MIR SINE MIR -63 199 53 208 219 0 0 chr3 57744393 57744434 -169780144 + MIR SINE MIR 82 122 -86 255 208 281 0 chr3 57745123 57745219 -169779359 - L2 LINE L2 0 3272 3150 331 348 142 0 chr3 57746115 57746270 -169778308 + MIR SINE MIR 18 194 -68 497 264 76 0 chr3 57746626 57746770 -169777808 + MER96 DNA MER1_type? 21 175 0 180 303 101 11 chr3 57747107 57747196 -169777382 + MIR SINE MIR 103 199 -63 220 320 190 10 chr3 57747867 57747967 -169776611 + MIR SINE MIR 80 197 -65 217 391 27 18 chr3 57748934 57749044 -169775534 - MIR SINE MIR -63 145 35 231 275 203 14 chr3 57751211 57751349 -169773229 + L2 LINE L2 3146 3309 -4 432 0 0 0 chr3 57751626 57751674 -169772904 + (TG)n Simple_repeat Simple_repeat 2 49 0 363 129 16 0 chr3 57752541 57752603 -169771975 + MER81 DNA DNA 52 114 0 197 308 15 0 chr3 57755065 57755130 -169769448 + L2 LINE L2 3200 3265 -7 241 326 135 0 chr3 57755186 57755275 -169769303 - MIR SINE MIR -90 118 18 211 294 70 9 chr3 57755649 57755764 -169768814 - MIR SINE MIR -69 139 45 2336 83 0 0 chr3 57756957 57757247 -169767331 - AluSg SINE Alu -14 296 7 807 161 0 0 chr3 57757535 57757659 -169766919 + FLAM_A SINE Alu 10 133 -9 180 0 0 0 chr3 57758362 57758382 -169766196 + (CCCCAG)n Simple_repeat Simple_repeat 3 22 0 298 352 103 23 chr3 57759477 57759778 -169764800 + L2 LINE L2 2948 3272 0 1989 144 0 0 chr3 57760139 57760438 -169764140 + AluSx SINE Alu 4 302 -10 438 329 37 62 chr3 57761333 57761576 -169763002 + MIR SINE MIR 23 259 -3 236 339 0 37 chr3 57762191 57762300 -169762278 + MIR SINE MIR 43 147 -61 235 300 130 20 chr3 57763094 57763194 -169761384 + MIR SINE MIR 20 130 -78 2291 84 10 0 chr3 57763497 57763807 -169760771 + AluSq SINE Alu 1 313 0 2160 95 0 23 chr3 57764882 57765188 -169759390 - AluSg SINE Alu -11 299 1 200 227 0 0 chr3 57765203 57765247 -169759331 + MIR SINE MIR 78 121 -87 271 305 71 16 chr3 57765555 57765719 -169758859 - MIR SINE MIR -25 237 63 192 143 214 0 chr3 57766509 57766551 -169758027 + L2 LINE L2 3222 3272 0 197 210 242 0 chr3 57766598 57766660 -169757918 + MIR3 SINE MIR 79 155 -53 188 314 100 0 chr3 57767662 57767732 -169756846 + MIR SINE MIR 77 153 -55 2318 93 6 3 chr3 57770189 57770500 -169754078 + AluSp SINE Alu 1 312 -1 260 350 10 0 chr3 57771349 57771449 -169753129 + MIR SINE MIR 162 262 0 1799 152 3 33 chr3 57771455 57771757 -169752821 - AluSx SINE Alu -19 293 1 375 259 18 45 chr3 57771846 57771958 -169752620 - MIR SINE MIR -62 200 92 268 292 52 21 chr3 57773549 57773645 -169750933 - L2 LINE L2 -189 3083 2985 279 320 87 48 chr3 57774088 57774319 -169750259 + MIR SINE MIR 11 250 -12 372 263 45 53 chr3 57774325 57774458 -169750120 - MIR3 SINE MIR -64 144 13 499 289 31 13 chr3 57777465 57777624 -169746954 + MIR SINE MIR 22 183 -79 184 268 0 0 chr3 57778208 57778249 -169746329 - MIR3 SINE MIR -51 157 117 219 264 50 71 chr3 57778717 57778857 -169745721 + L2 LINE L2 2916 3052 -220 2095 174 112 47 chr3 57779382 57779854 -169744724 + MLT1D LTR MaLR 3 505 0 418 181 26 52 chr3 57779854 57779970 -169744608 + MLT1D-int LTR MaLR 1 113 -1258 185 270 16 16 chr3 57780297 57780360 -169744218 + MIR SINE MIR 83 145 -63 210 171 0 0 chr3 57781723 57781758 -169742820 - MIR SINE MIR -115 147 113 444 183 0 65 chr3 57781954 57782047 -169742531 - AluJo SINE Alu -141 171 85 214 307 30 24 chr3 57782058 57782140 -169742438 - MIR SINE MIR -49 159 74 301 389 124 0 chr3 57782442 57782635 -169741943 - MIR SINE MIR -43 219 3 349 255 137 10 chr3 57783336 57783438 -169741140 - MIR SINE MIR -63 145 31 1061 177 0 0 chr3 57784478 57784659 -169739919 + AluJo SINE Alu 113 293 -19 2185 108 0 0 chr3 57784664 57784961 -169739617 + AluSq SINE Alu 1 297 -16 2105 91 29 23 chr3 57784963 57785270 -169739308 + AluSg SINE Alu 1 309 -1 213 271 14 14 chr3 57785276 57785323 -169739255 + GA-rich Low_complexity Low_complexity 3 52 -20 2161 117 7 0 chr3 57785323 57785623 -169738955 + AluSx SINE Alu 1 302 -10 213 271 14 14 chr3 57785623 57785645 -169738933 + GA-rich Low_complexity Low_complexity 51 72 0 480 18 0 0 chr3 57786715 57786772 -169737806 + (TG)n Simple_repeat Simple_repeat 1 57 0 225 244 8 122 chr3 57786815 57786880 -169737698 - MIR3 SINE MIR -33 175 131 2332 93 0 3 chr3 57786880 57787191 -169737387 + AluY SINE Alu 1 310 -1 225 244 8 122 chr3 57787191 57787256 -169737322 - MIR3 SINE MIR -77 131 60 513 343 56 49 chr3 57788636 57788793 -169735785 - L1M4 LINE L1 -1795 4351 4190 1944 96 82 17 chr3 57788793 57789086 -169735492 - AluSq SINE Alu -1 312 1 513 343 56 49 chr3 57789086 57789214 -169735364 - L1M4 LINE L1 -1956 4190 4064 366 294 105 28 chr3 57789349 57789492 -169735086 - L2 LINE L2 -1 3271 3118 970 243 50 35 chr3 57789692 57789927 -169734651 + LTR16C LTR ERVL 156 399 -92 1823 234 38 64 chr3 57789927 57789962 -169734616 - LTR40a LTR ERVL 0 519 485 2283 82 10 0 chr3 57789962 57790256 -169734322 - AluSc SINE Alu -12 297 1 1823 234 38 64 chr3 57790256 57790753 -169733825 - LTR40a LTR ERVL -34 485 1 970 243 50 35 chr3 57790753 57790834 -169733744 + LTR16C LTR ERVL 399 477 -14 328 329 110 14 chr3 57790993 57791139 -169733439 - L1M4 LINE L1 -1104 5042 4883 318 227 18 117 chr3 57791181 57791344 -169733234 + Zaphod DNA AcHobo 69 215 -3816 1897 164 7 10 chr3 57791423 57791733 -169732845 - AluJo SINE Alu -3 309 1 26 88 0 0 chr3 57791761 57791829 -169732749 + AT_rich Low_complexity Low_complexity 1 68 0 1813 176 0 3 chr3 57791901 57792202 -169732376 + AluJo SINE Alu 1 300 -12 1714 189 0 7 chr3 57792206 57792508 -169732070 + AluJb SINE Alu 1 300 -12 24 32 0 0 chr3 57792609 57792640 -169731938 + AT_rich Low_complexity Low_complexity 1 31 0 2250 98 0 3 chr3 57792640 57792935 -169731643 - AluSq SINE Alu -19 294 1 693 240 5 45 chr3 57792939 57793139 -169731439 - AluJo SINE Alu 0 312 121 1263 261 73 0 chr3 57793142 57793541 -169731037 + Zaphod DNA AcHobo 3595 4022 -9 364 243 49 98 chr3 57793704 57793770 -169730808 - MIR SINE MIR -69 193 125 1825 153 30 0 chr3 57793770 57794071 -169730507 + AluJb SINE Alu 1 310 -2 364 243 49 98 chr3 57794071 57794200 -169730378 - MIR SINE MIR -137 125 13 212 330 22 0 chr3 57796848 57796939 -169727639 - L3b LINE CR1 -181 1402 1310 399 21 0 0 chr3 57797116 57797164 -169727414 + (CA)n Simple_repeat Simple_repeat 1 48 0 191 333 116 23 chr3 57798821 57798950 -169725628 + L2 LINE L2 2638 2778 -536 564 371 39 20 chr3 57799006 57799362 -169725216 + L2 LINE L2 2923 3285 -28 372 337 72 0 chr3 57799885 57800066 -169724512 + MIR SINE MIR 47 240 -22 203 295 0 0 chr3 57801033 57801094 -169723484 + L2 LINE L2 2904 2964 -349 188 276 73 49 chr3 57804369 57804492 -169720086 + MIR SINE MIR 20 148 -60 245 291 258 19 chr3 57804690 57804961 -169719617 - L2 LINE L2 -2 3270 2935 22 56 0 0 chr3 57806970 57807006 -169717572 + GC_rich Low_complexity Low_complexity 1 36 0 482 254 158 24 chr3 57808753 57808918 -169715660 - MIR SINE MIR -17 245 59 396 0 0 0 chr3 57809551 57809595 -169714983 + (TG)n Simple_repeat Simple_repeat 2 45 0 190 262 24 0 chr3 57810366 57810450 -169714128 + (TG)n Simple_repeat Simple_repeat 1 86 0 311 286 80 49 chr3 57810555 57810779 -169713799 + MIR SINE MIR 16 246 -16 270 318 0 0 chr3 57811323 57811386 -169713192 + MIR SINE MIR 85 147 -61 334 353 84 32 chr3 57811422 57811612 -169712966 + L1M4 LINE L1 4976 5175 -971 201 180 0 0 chr3 57812130 57812180 -169712398 + G-rich Low_complexity Low_complexity 1 50 0 281 389 56 0 chr3 57812902 57813064 -169711514 - MIR SINE MIR -29 233 63 2382 62 0 3 chr3 57813748 57814040 -169710538 - AluSc SINE Alu -18 291 1 312 279 136 14 chr3 57814108 57814248 -169710330 + MIR SINE MIR 74 230 -32 1775 169 3 28 chr3 57816227 57816365 -169708213 + AluJo SINE Alu 1 141 -171 2032 121 13 19 chr3 57816365 57816672 -169707906 + AluSx SINE Alu 1 305 -7 1775 169 3 28 chr3 57816672 57816852 -169707726 + AluJo SINE Alu 141 311 -1 288 321 37 22 chr3 57817405 57817539 -169707039 + L2 LINE L2 2968 3103 -169 181 224 69 17 chr3 57817563 57817621 -169706957 + L2 LINE L2 3210 3270 -2 407 276 112 0 chr3 57818696 57818812 -169705766 - MIR SINE MIR -106 156 28 411 173 0 0 chr3 57819296 57819377 -169705201 + (TG)n Simple_repeat Simple_repeat 1 81 0 303 297 93 0 chr3 57821786 57821904 -169702674 - MIR SINE MIR -63 145 17 2044 116 31 0 chr3 57821963 57822256 -169702322 + AluSq SINE Alu 1 302 -11 215 259 49 0 chr3 57823875 57823947 -169700631 - MIR SINE MIR -63 145 70 353 319 17 3 chr3 57824515 57824667 -169699911 - MIR SINE MIR -47 215 62 257 262 24 12 chr3 57825478 57825562 -169699016 + MIR SINE MIR 69 153 -109 331 356 69 0 chr3 57825804 57825978 -169698600 + MIR SINE MIR 45 230 -32 180 274 6 159 chr3 57828241 57828398 -169696180 - L2 LINE L2 -16 3256 3124 332 325 13 6 chr3 57828399 57828556 -169696022 + (CA)n Simple_repeat Simple_repeat 1 158 0 246 328 12 64 chr3 57828702 57828873 -169695705 + MIR SINE MIR 61 222 -40 267 140 0 0 chr3 57829339 57829389 -169695189 + (TG)n Simple_repeat Simple_repeat 2 51 0 2165 126 0 7 chr3 57829537 57829847 -169694731 - AluSx SINE Alu -4 308 1 395 261 100 8 chr3 57830067 57830197 -169694381 - MIR3 SINE MIR -48 160 19 2223 114 3 0 chr3 57830461 57830769 -169693809 - AluSg SINE Alu -1 309 1 1659 140 6 92 chr3 57830861 57831175 -169693403 + AluJb SINE Alu 6 292 -20 267 297 51 8 chr3 57831175 57831293 -169693285 - L2 LINE L2 -10 3262 3140 392 240 21 0 chr3 57831317 57831413 -169693165 + MIR SINE MIR 76 173 -89 667 249 41 29 chr3 57831425 57831694 -169692884 + L1ME2 LINE L1 5877 6155 -9 2292 64 44 0 chr3 57832418 57832716 -169691862 + AluY SINE Alu 1 311 0 369 75 0 0 chr3 57832738 57832791 -169691787 + (GA)n Simple_repeat Simple_repeat 2 54 0 260 359 15 48 chr3 57832798 57833004 -169691574 - L2 LINE L2 -247 3025 2827 232 273 90 45 chr3 57834212 57834361 -169690217 - MIR SINE MIR -65 143 19 249 350 102 21 chr3 57834929 57835115 -169689463 - MIR SINE MIR -21 241 41 356 328 26 9 chr3 57835249 57835365 -169689213 + MIR SINE MIR 30 147 -61 394 220 25 59 chr3 57836071 57836189 -169688389 + MIR SINE MIR 50 163 -99 * 542 288 56 6 chr3 57836172 57836332 -169688246 - MIR SINE MIR -15 247 80 187 277 138 0 chr3 57836878 57836943 -169687635 + MIR3 SINE MIR 83 156 -52 215 259 49 0 chr3 57837590 57837662 -169686916 + MIR SINE MIR 70 145 -63 1292 140 0 27 chr3 57839539 57839760 -169684818 - AluSg/x SINE Alu -13 297 83 442 90 0 30 chr3 57839860 57839927 -169684651 + AluSg/x SINE Alu 219 283 -26 405 58 0 0 chr3 57839928 57839980 -169684598 + (TGAA)n Simple_repeat Simple_repeat 3 54 0 976 224 28 5 chr3 57839980 57840150 -169684428 + L1MB3 LINE L1 5965 6142 -41 1690 189 3 3 chr3 57840150 57840456 -169684122 + AluJo SINE Alu 1 306 -6 976 224 28 5 chr3 57840456 57840499 -169684079 + L1MB3 LINE L1 6142 6183 0 828 204 45 0 chr3 57840490 57840710 -169683868 + L1M4 LINE L1 5022 5251 -895 * 1409 123 60 34 chr3 57840735 57840948 -169683630 + MER1A DNA MER1_type 46 264 -265 1170 99 5 42 chr3 57840948 57841140 -169683438 + THE1C LTR MaLR 1 185 -190 1969 118 6 32 chr3 57841240 57841555 -169683023 - AluSx SINE Alu -5 307 1 227 256 52 111 chr3 57841566 57841738 -169682840 + L2 LINE L2 3150 3311 -2 338 256 66 25 chr3 57842371 57842492 -169682086 - L2 LINE L2 0 3272 3147 337 150 0 0 chr3 57842918 57842978 -169681600 - AluSc SINE Alu -1 298 239 22 0 0 0 chr3 57843474 57843496 -169681082 + AT_rich Low_complexity Low_complexity 1 22 0 1418 159 0 98 chr3 57844332 57844496 -169680082 - AluJo SINE Alu -18 294 176 2353 72 0 13 chr3 57844496 57844800 -169679778 - AluY SINE Alu -11 300 1 1418 159 0 98 chr3 57844800 57844961 -169679617 - AluJo SINE Alu -136 176 1 274 286 92 26 chr3 57845493 57845766 -169678812 + L1ME4a LINE L1 5830 6120 -1 669 114 0 0 chr3 57846688 57846776 -169677802 + AluS SINE Alu 3 90 -222 222 119 17 34 chr3 57846778 57846837 -169677741 + G-rich Low_complexity Low_complexity 4 61 0 407 276 112 0 chr3 57847464 57847580 -169676998 + MIR SINE MIR 28 156 -106 233 333 35 0 chr3 57848785 57848872 -169675706 - L2 LINE L2 -215 3057 2968 1620 184 3 29 chr3 57849435 57849606 -169674972 - AluJo SINE Alu -10 302 141 2032 121 13 19 chr3 57849606 57849913 -169674665 - AluSx SINE Alu -7 305 1 1620 184 3 29 chr3 57849913 57850051 -169674527 - AluJo SINE Alu -171 141 1 1283 244 3 0 chr3 57850733 57851020 -169673558 - AluSx SINE Alu -17 295 8 13777 84 25 20 chr3 57853543 57853644 -169670934 + Charlie3 DNA MER1_type 679 778 -1928 2115 113 0 3 chr3 57853644 57853936 -169670642 + AluSx SINE Alu 1 291 -21 13777 84 25 20 chr3 57853936 57855169 -169669409 + Charlie3 DNA MER1_type 778 2003 -703 2163 107 0 19 chr3 57855169 57855479 -169669099 - AluSx SINE Alu -7 305 2 2265 107 0 0 chr3 57855480 57855780 -169668798 - AluSx SINE Alu -11 301 2 13777 84 25 20 chr3 57855780 57856460 -169668118 + Charlie3 DNA MER1_type 2002 2706 0 363 141 32 8 chr3 57856469 57856571 -169668007 + L1M LINE L1 5254 5353 -813 211 261 268 29 chr3 57857720 57857858 -169666720 - L2 LINE L2 -96 3176 3006 23 33 0 0 chr3 57858811 57858841 -169665737 + GC_rich Low_complexity Low_complexity 1 30 0 31 76 0 0 chr3 57859056 57859122 -169665456 + GC_rich Low_complexity Low_complexity 1 66 0 227 164 16 0 chr3 57859286 57859347 -169665231 + G-rich Low_complexity Low_complexity 3 64 0 324 299 121 6 chr3 57860624 57860781 -169663797 + MIR SINE MIR 50 224 -38 210 37 0 0 chr3 57861287 57861314 -169663264 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 316 260 10 58 chr3 57861720 57861824 -169662754 - MIR SINE MIR -117 145 47 2258 124 0 6 chr3 57861986 57862300 -169662278 - AluSx SINE Alu 0 312 1 1479 179 69 17 chr3 57862300 57862590 -169661988 - AluJo SINE Alu -7 305 1 1621 147 61 0 chr3 57862592 57862919 -169661659 - L1 LINE L1 -817 5329 4983 27 62 0 0 chr3 57863112 57863160 -169661418 + AT_rich Low_complexity Low_complexity 1 48 0 335 343 80 23 chr3 57863668 57863843 -169660735 - L3 LINE CR1 -82 1495 1311 2155 122 0 0 chr3 57864443 57864722 -169659856 + AluSx SINE Alu 1 279 -33 357 124 0 0 chr3 57864725 57864792 -169659786 - Alu SINE Alu -255 46 1 197 290 54 54 chr3 57864842 57864935 -169659643 - L3 LINE CR1 -557 1020 928 506 198 111 24 chr3 57865439 57865565 -169659013 - MIR SINE MIR -70 192 56 180 111 0 0 chr3 57865657 57865684 -169658894 + (TTGTG)n Simple_repeat Simple_repeat 4 30 0 1814 154 0 0 chr3 57865684 57865959 -169658619 - AluSx SINE Alu -25 287 13 194 269 58 0 chr3 57868039 57868091 -169656487 - MIR3 SINE MIR -38 170 116 505 259 0 9 chr3 57869151 57869267 -169655311 + MIR SINE MIR 30 144 -118 544 178 0 9 chr3 57869352 57869459 -169655119 - MLT1F LTR MaLR 0 542 437 261 324 214 0 chr3 57870457 57870602 -169653976 + MIR SINE MIR 65 240 -22 276 317 33 17 chr3 57872910 57873030 -169651548 + MIR SINE MIR 112 233 -29 209 298 39 48 chr3 57873517 57873621 -169650957 - L2 LINE L2 -38 3275 3173 2266 95 3 3 chr3 57873645 57873939 -169650639 + AluSc SINE Alu 1 294 -15 207 281 47 0 chr3 57874560 57874624 -169649954 + MIR SINE MIR 81 147 -61 859 117 67 0 chr3 57874767 57874887 -169649691 + FRAM SINE Alu 32 159 -17 452 173 25 0 chr3 57875743 57875824 -169648754 - MIR SINE MIR -3 259 177 226 245 0 20 chr3 57875809 57875858 -169648720 - MIR3 SINE MIR -46 162 115 * 389 282 77 24 chr3 57876523 57876693 -169647885 - MIR SINE MIR -65 197 19 343 339 74 26 chr3 57877291 57877480 -169647098 - MIR SINE MIR -18 244 47 338 209 70 85 chr3 57877743 57877908 -169646670 + MIR SINE MIR 32 202 -60 239 307 57 51 chr3 57878432 57878514 -169646064 - L2 LINE L2 -208 3064 2984 2499 82 3 13 chr3 57878514 57878829 -169645749 + AluSx SINE Alu 1 312 0 239 307 57 51 chr3 57878829 57878922 -169645656 - L2 LINE L2 -288 2984 2888 197 228 88 18 chr3 57879817 57879874 -169644704 - MIR SINE MIR -95 113 53 299 200 213 0 chr3 57880179 57880254 -169644324 - MIR3 SINE MIR -5 203 113 2541 78 0 3 chr3 57882163 57882470 -169642108 + AluY SINE Alu 1 306 -5 343 294 98 44 chr3 57882491 57882695 -169641883 + MIR SINE MIR 15 229 -33 871 271 113 43 chr3 57882894 57883120 -169641458 - L2 LINE L2 -1076 2238 2029 2216 98 3 3 chr3 57883120 57883415 -169641163 + AluY SINE Alu 1 295 -16 871 271 113 43 chr3 57883415 57883605 -169640973 - L2 LINE L2 -1285 2029 1793 2435 87 0 0 chr3 57884482 57884780 -169639798 - AluY SINE Alu -13 298 1 2286 98 7 7 chr3 57884800 57885105 -169639473 + AluSx SINE Alu 1 305 -7 1738 77 17 34 chr3 57885105 57885338 -169639240 + AluY SINE Alu 1 229 -82 1608 73 0 55 chr3 57885341 57885560 -169639018 + AluY SINE Alu 94 300 -11 2157 127 10 3 chr3 57885595 57885902 -169638676 + AluSg SINE Alu 1 309 -1 2356 90 3 3 chr3 57887144 57887444 -169637134 + AluY SINE Alu 1 300 -11 617 107 90 16 chr3 57888481 57888603 -169635975 - L1M3 LINE L1 -388 5792 5662 6951 29 0 0 chr3 57888607 57889447 -169635131 - L1PA3 LINE L1 -1 6154 5315 * 12963 35 5 1 chr3 57889446 57891086 -169633492 + L1P LINE L1 905 2551 -3595 2690 190 58 37 chr3 57891085 57891769 -169632809 - L1M3 LINE L1 -507 5673 4966 * 1937 164 3 3 chr3 57891769 57892067 -169632511 - AluJb SINE Alu -14 298 1 2690 190 58 37 chr3 57892067 57892442 -169632136 - L1M3 LINE L1 -1214 4966 4600 1343 137 11 0 chr3 57892484 57892674 -169631904 - AluSx SINE Alu -118 194 3 779 207 141 0 chr3 57892684 57892882 -169631696 - L1M3 LINE L1 -1542 4604 4379 384 300 59 92 chr3 57892929 57893266 -169631312 - L1M4c LINE L1 -6024 360 35 3739 214 39 52 chr3 57893283 57893441 -169631137 - L1M4 LINE L1 -849 5297 5138 2359 108 10 0 chr3 57893441 57893737 -169630841 - AluSx SINE Alu -12 300 2 3739 214 39 52 chr3 57893737 57893883 -169630695 - L1M4 LINE L1 -1008 5138 4992 2343 163 70 2 chr3 57893883 57894282 -169630296 - MSTB LTR MaLR 0 426 1 3739 214 39 52 chr3 57894282 57894913 -169629665 - L1M4 LINE L1 -1154 4992 4380 2274 100 7 0 chr3 57894913 57895203 -169629375 + AluSx SINE Alu 1 292 -20 3739 214 39 52 chr3 57895203 57895508 -169629070 - L1M4 LINE L1 -1766 4380 4072 790 188 0 0 chr3 57895508 57895636 -169628942 - FLAM_C SINE Alu -5 128 1 213 195 0 0 chr3 57896339 57896380 -169628198 + CT-rich Low_complexity Low_complexity 1 41 0 2155 143 3 37 chr3 57897275 57897624 -169626954 + MER1B DNA MER1_type 1 337 0 2294 75 16 26 chr3 57897652 57897957 -169626621 - AluSc SINE Alu -7 302 1 1693 71 36 0 chr3 57898588 57898812 -169625766 - L1PA8 LINE L1 -2 6170 5939 2229 150 11 26 chr3 57899005 57899386 -169625192 - THE1C LTR MaLR 0 375 1 2457 86 0 0 chr3 57899552 57899856 -169624722 + AluSc SINE Alu 1 304 -5 1678 142 12 8 chr3 57899857 57900111 -169624467 + AluSx SINE Alu 40 294 -18 225 290 72 14 chr3 57900146 57900284 -169624294 - L1MEc LINE L1 -4386 2010 1865 2505 181 39 31 chr3 57900286 57900665 -169623913 - Cheshire DNA MER1_type -2 2418 2031 1761 183 10 3 chr3 57900665 57900826 -169623752 - AluJo SINE Alu -15 297 132 207 0 0 0 chr3 57900826 57900849 -169623729 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1761 183 10 3 chr3 57900849 57900977 -169623601 - AluJo SINE Alu -180 132 6 2505 181 39 31 chr3 57900977 57901183 -169623395 - Cheshire DNA MER1_type -389 2031 1828 2064 89 0 15 chr3 57901223 57901484 -169623094 + AluSq SINE Alu 31 289 -24 183 42 0 0 chr3 57901484 57901508 -169623070 + (CCAA)n Simple_repeat Simple_repeat 2 25 0 324 279 90 16 chr3 57901541 57901663 -169622915 - L1MC4 LINE L1 -931 7111 6981 3828 187 105 25 chr3 57901885 57903342 -169621236 - L1MB7 LINE L1 0 6184 4605 958 119 0 0 chr3 57903344 57903478 -169621100 - AluSg/x SINE Alu -16 294 161 1426 225 38 61 chr3 57903722 57903892 -169620686 - L1MA4 LINE L1 0 6300 6127 1832 129 24 14 chr3 57903892 57904179 -169620399 + AluSx SINE Alu 5 294 -18 1426 225 38 61 chr3 57904179 57904514 -169620064 - L1MA4 LINE L1 -173 6127 5807 201 162 0 0 chr3 57904514 57904551 -169620027 + T-rich Low_complexity Low_complexity 1 37 0 11293 160 66 31 chr3 57904682 57905465 -169619113 - L1MA4 LINE L1 -211 7151 6397 1888 136 46 0 chr3 57905465 57905745 -169618833 - AluJo SINE Alu -5 307 15 11293 160 66 31 chr3 57905745 57906696 -169617882 - L1MA4 LINE L1 -965 6397 5481 2109 129 0 16 chr3 57906696 57906999 -169617579 - AluSx SINE Alu -14 298 1 11293 160 66 31 chr3 57906999 57908955 -169615623 - L1MA4 LINE L1 -1881 5481 3595 2200 122 0 10 chr3 57908955 57909259 -169615319 - AluSx SINE Alu -11 301 1 11293 160 66 31 chr3 57909259 57909564 -169615014 - L1MA4 LINE L1 -3767 3595 3302 1563 122 36 137 chr3 57909564 57909739 -169614839 + THE1C LTR MaLR 1 192 -183 2199 118 0 3 chr3 57909739 57910043 -169614535 - AluSg SINE Alu -3 307 5 1563 122 36 137 chr3 57910043 57910080 -169614498 + THE1C LTR MaLR 192 231 -144 2090 145 0 3 chr3 57910080 57910376 -169614202 + AluSx SINE Alu 1 295 -17 1563 122 36 137 chr3 57910376 57910579 -169613999 + THE1C LTR MaLR 231 375 0 11293 160 66 31 chr3 57910579 57911176 -169613402 - L1MA4 LINE L1 -4060 3302 2355 1888 144 43 30 chr3 57911176 57911545 -169613033 + MSTA LTR MaLR 15 388 -40 1479 139 0 5 chr3 57911569 57911784 -169612794 + AluSg/x SINE Alu 82 295 -15 286 176 0 0 chr3 57911784 57911835 -169612743 + MSTA LTR MaLR 378 428 0 2793 241 86 34 chr3 57911835 57913297 -169611281 - L1MA4 LINE L1 -5342 1867 2 1455 239 19 40 chr3 57913472 57913872 -169610706 - L1M4 LINE L1 -1746 4400 4010 2258 115 0 0 chr3 57913872 57914168 -169610410 + AluSq SINE Alu 1 296 -17 1455 239 19 40 chr3 57914168 57914244 -169610334 - L1M4 LINE L1 -2136 4010 3934 588 228 8 8 chr3 57914247 57914374 -169610204 + FLAM_A SINE Alu 1 127 -6 4802 128 71 10 chr3 57914374 57915442 -169609136 + L1PB1 LINE L1 5018 6150 -1 2681 238 90 37 chr3 57915464 57915593 -169608985 - L1M4 LINE L1 -2234 3912 3791 2450 74 0 3 chr3 57915593 57915889 -169608689 - AluY SINE Alu -16 295 1 2681 238 90 37 chr3 57915889 57916665 -169607913 - L1M4 LINE L1 -2355 3791 2924 2233 120 0 0 chr3 57916665 57916965 -169607613 - AluSx SINE Alu -12 300 1 2681 238 90 37 chr3 57916965 57917274 -169607304 - L1M4 LINE L1 -3222 2924 2633 405 321 98 7 chr3 57917329 57917616 -169606962 - Charlie2 DNA MER1_type -2543 319 7 28 0 0 0 chr3 57917960 57917988 -169606590 + AT_rich Low_complexity Low_complexity 1 28 0 275 326 48 27 chr3 57918006 57918153 -169606425 + L2 LINE L2 2266 2415 -899 313 338 56 75 chr3 57918259 57918310 -169606268 + L2 LINE L2 2592 2642 -672 705 243 23 23 chr3 57918310 57918483 -169606095 - FAM SINE Alu -2 173 1 313 338 56 75 chr3 57918483 57918697 -169605881 + L2 LINE L2 2642 2852 -462 721 306 55 85 chr3 57918772 57918810 -169605768 + L2 LINE L2 2810 2848 -424 1252 158 186 8 chr3 57918810 57919063 -169605515 - AluJo SINE Alu -3 299 2 721 306 55 85 chr3 57919063 57919494 -169605084 + L2 LINE L2 2848 3265 -7 263 278 23 139 chr3 57919515 57919593 -169604985 - L2 LINE L2 -202 3070 2985 1982 154 0 10 chr3 57919593 57919899 -169604679 + AluJb SINE Alu 1 303 -9 263 278 23 139 chr3 57919899 57920122 -169604456 - L2 LINE L2 -287 2985 2804 2398 69 0 3 chr3 57920573 57920864 -169603714 + AluY SINE Alu 1 290 -21 53 0 0 0 chr3 57920872 57920925 -169603653 + AT_rich Low_complexity Low_complexity 1 53 0 246 189 167 22 chr3 57920989 57921079 -169603499 - L3 LINE CR1 -673 904 802 741 278 34 39 chr3 57921225 57921606 -169602972 - L1MC4a LINE L1 -1803 6005 5627 240 143 0 0 chr3 57921776 57921818 -169602760 + (TATG)n Simple_repeat Simple_repeat 2 43 0 2170 110 0 17 chr3 57921951 57922252 -169602326 - AluSx SINE Alu -16 296 1 532 284 174 42 chr3 57922384 57923045 -169601533 - HAL1b LINE L1 -475 873 126 2468 71 6 6 chr3 57923100 57923411 -169601167 - AluY SINE Alu 0 311 1 237 284 37 25 chr3 57923414 57923576 -169601002 - L1MEd LINE L1 -4900 1305 1142 288 148 0 0 chr3 57924312 57924366 -169600212 - L1MEd LINE L1 -5241 1155 1102 1431 255 55 11 chr3 57924520 57924549 -169600029 - L1M4c LINE L1 -4064 2318 2292 2355 74 10 3 chr3 57924549 57924846 -169599732 - AluY SINE Alu -12 299 1 1431 255 55 11 chr3 57924846 57925275 -169599303 - L1M4c LINE L1 -4090 2292 1883 1928 135 30 3 chr3 57925275 57925579 -169598999 - AluSx SINE Alu 0 312 1 1431 255 55 11 chr3 57925579 57925642 -169598936 - L1M4c LINE L1 -4499 1883 1292 2122 145 42 47 chr3 57925669 57925844 -169598734 - MSTA LTR MaLR -2 426 252 7173 44 15 32 chr3 57925844 57926640 -169597938 - L1PA5 LINE L1 -1 6153 5368 2517 54 14 0 chr3 57926640 57926935 -169597643 - AluY SINE Alu -12 299 1 7173 44 15 32 chr3 57926935 57927229 -169597349 - L1PA5 LINE L1 -786 5368 5070 2122 145 42 47 chr3 57927229 57927481 -169597097 - MSTA LTR MaLR -176 252 1 1644 218 85 23 chr3 57927490 57928385 -169596193 - L1M3c LINE L1 -4636 2401 1445 461 184 134 78 chr3 57929570 57929749 -169594829 + L2 LINE L2 3121 3309 -4 309 320 8 16 chr3 57929788 57929913 -169594665 + MIR SINE MIR 20 143 -119 297 218 81 0 chr3 57929974 57929993 -169594585 - L1MA10 LINE L1 -24 6310 6292 2176 241 36 32 chr3 57929993 57930807 -169593771 - L1ME1 LINE L1 -39 6127 5285 951 195 51 0 chr3 57930921 57931214 -169593364 - L1MB4 LINE L1 -6 6174 5821 1329 168 90 8 chr3 57931320 57931564 -169593014 - AluJo SINE Alu -45 267 4 1028 148 158 0 chr3 57931585 57931768 -169592810 - AluSq SINE Alu -17 296 85 1872 236 40 63 chr3 57931770 57931901 -169592677 + L1M4 LINE L1 3484 3617 -2529 2192 113 0 3 chr3 57931901 57932194 -169592384 - AluSx SINE Alu -20 292 1 1872 236 40 63 chr3 57932194 57932299 -169592279 + L1M4 LINE L1 3617 3723 -2423 1787 172 0 10 chr3 57932299 57932590 -169591988 + AluJo SINE Alu 3 290 -22 2431 70 0 7 chr3 57932600 57932899 -169591679 + AluY SINE Alu 1 297 -14 1872 236 40 63 chr3 57932899 57933039 -169591539 + L1M4 LINE L1 3732 3874 -2272 1436 174 7 14 chr3 57933039 57933326 -169591252 + L1MC1 LINE L1 6049 6333 0 1872 236 40 63 chr3 57933326 57933787 -169590791 + L1M4 LINE L1 3874 4314 -1832 2348 52 6 46 chr3 57933848 57934174 -169590404 + L1PA10 LINE L1 5846 6158 -10 1646 165 0 25 chr3 57934178 57934463 -169590115 - AluJo SINE Alu -34 278 1 244 230 90 45 chr3 57934466 57934688 -169589890 + L1M4 LINE L1 4316 4547 -1599 28 0 0 0 chr3 57934709 57934737 -169589841 + AT_rich Low_complexity Low_complexity 1 28 0 641 143 0 0 chr3 57934743 57934834 -169589744 - AluJ/FLAM SINE Alu -221 91 1 2136 238 38 23 chr3 57934896 57935740 -169588838 - L1 LINE L1 -3413 4152 3323 1036 130 17 87 chr3 57935740 57935971 -169588607 + L1MA8 LINE L1 6073 6287 -4 1867 145 35 11 chr3 57935979 57936261 -169588317 + AluJo SINE Alu 1 289 -23 2136 238 38 23 chr3 57936261 57936308 -169588270 - L1 LINE L1 -4248 3317 3237 4738 124 35 21 chr3 57936452 57938196 -169586382 - L1PA13 LINE L1 -11 6152 4457 695 288 54 41 chr3 57938819 57939070 -169585508 + L1MCc LINE L1 1263 1509 -5236 1886 160 3 6 chr3 57939070 57939382 -169585196 - AluJb SINE Alu -1 311 1 695 288 54 41 chr3 57939382 57939701 -169584877 + L1MCc LINE L1 1509 1838 -4907 1969 114 50 4 chr3 57939702 57939819 -169584759 + AluSx SINE Alu 5 115 -197 6594 64 18 1 chr3 57939819 57941154 -169583424 + L1PA7 LINE L1 4804 6153 -1 1969 114 50 4 chr3 57941154 57941316 -169583262 + AluSx SINE Alu 115 297 -15 320 234 134 58 chr3 57941317 57941488 -169583090 + L1MCc LINE L1 1877 2060 -4883 550 306 128 31 chr3 57941672 57942031 -169582547 + L1M4 LINE L1 84 477 -6065 1425 168 48 17 chr3 57942129 57942421 -169582157 + MER2 DNA MER2_type 45 345 0 2167 239 45 46 chr3 57942447 57943205 -169581373 + L1M4 LINE L1 509 1265 -5277 1944 225 70 78 chr3 57943214 57943565 -169581013 + L1M4 LINE L1 2588 2940 -3704 2221 90 0 0 chr3 57943565 57943842 -169580736 + AluSx SINE Alu 1 277 -35 207 0 0 0 chr3 57943844 57943867 -169580711 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1944 225 70 78 chr3 57943867 57944607 -169579971 + L1M4 LINE L1 2941 3637 -3007 1564 128 13 4 chr3 57944711 57944946 -169579632 - AluSx SINE Alu -75 237 1 1924 202 76 43 chr3 57944950 57945368 -169579210 - L1M4 LINE L1 -841 5305 4858 2551 60 0 10 chr3 57945368 57945682 -169578896 + AluY SINE Alu 1 311 0 1924 202 76 43 chr3 57945682 57945892 -169578686 - L1M4 LINE L1 -1288 4858 4656 225 135 39 0 chr3 57945929 57945981 -169578597 - L1MB3 LINE L1 -16 6167 6114 305 24 24 0 chr3 57945982 57946023 -169578555 + 5S rRNA rRNA 1 42 -79 906 187 10 15 chr3 57946023 57946221 -169578357 - L1MB3 LINE L1 -57 6126 5930 265 250 0 0 chr3 57946272 57946324 -169578254 - Tigger5 DNA MER2_type -2270 53 2 1453 163 67 3 chr3 57946326 57946626 -169577952 - L1MB3 LINE L1 -262 5921 5603 250 155 82 21 chr3 57946629 57946726 -169577852 + (TTAAA)n Simple_repeat Simple_repeat 5 107 0 1833 200 39 9 chr3 57946726 57947030 -169577548 - L1MB3 LINE L1 -567 5616 5323 1726 158 9 66 chr3 57947030 57947347 -169577231 + AluJo SINE Alu 1 299 -13 1833 200 39 9 chr3 57947347 57947810 -169576768 - L1MB3 LINE L1 -860 5323 4818 257 174 0 87 chr3 57947813 57947828 -169576750 - L1MB3 LINE L1 -1821 4325 4310 1937 182 8 0 chr3 57947828 57948191 -169576387 + MER47A DNA MER2_type 1 366 0 257 174 0 87 chr3 57948191 57948254 -169576324 - L1MB3 LINE L1 -1836 4310 4253 2433 67 7 0 chr3 57948254 57948552 -169576026 - AluY SINE Alu -9 302 3 257 174 0 87 chr3 57948552 57948564 -169576014 - L1MB3 LINE L1 -1893 4253 4242 40 59 0 0 chr3 57948597 57948665 -169575913 + AT_rich Low_complexity Low_complexity 1 68 0 4317 40 4 0 chr3 57949217 57949743 -169574835 + L1PA5 LINE L1 5627 6154 0 369 197 197 34 chr3 57950099 57950246 -169574332 - L1MB3 LINE L1 -2069 4077 3907 390 294 78 20 chr3 57950289 57950442 -169574136 - L1MB3 LINE L1 -2446 3700 3539 423 222 0 0 chr3 57950444 57950525 -169574053 - Tigger5 DNA MER2_type 0 2323 2243 320 167 17 17 chr3 57950572 57950632 -169573946 - Tigger5 DNA MER2_type 0 2323 2264 260 179 18 18 chr3 57950612 57950668 -169573910 - Tigger5 DNA MER2_type -2267 56 1 * 715 251 43 46 chr3 57950668 57950748 -169573830 - L1MB3 LINE L1 -2616 3530 3451 2133 126 0 7 chr3 57950748 57951057 -169573521 - AluSx SINE Alu -5 307 1 715 251 43 46 chr3 57951057 57951326 -169573252 - L1MB3 LINE L1 -2695 3451 3182 1399 227 54 0 chr3 57951327 57951719 -169572859 - Cheshire DNA MER1_type -1489 931 519 434 139 83 0 chr3 57951742 57951814 -169572764 - MER2 DNA MER2_type 0 345 268 934 208 11 0 chr3 57951855 57952038 -169572540 - MER2 DNA MER2_type -160 185 1 659 171 0 34 chr3 57952146 57952263 -169572315 + FLAM_A SINE Alu 10 122 -20 207 0 0 0 chr3 57952392 57952415 -169572163 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 676 158 0 0 chr3 57952415 57952516 -169572062 - AluSq/x SINE Alu -191 121 21 2442 97 0 6 chr3 57952547 57952858 -169571720 - AluSx SINE Alu -3 309 1 33 0 0 0 chr3 57953065 57953098 -169571480 + AT_rich Low_complexity Low_complexity 1 33 0 2979 103 30 28 chr3 57953099 57953602 -169570976 - L1MA6 LINE L1 0 6300 5797 * 11469 53 4 2 chr3 57953599 57955828 -169568750 - L1PA5 LINE L1 -2 6152 3921 2103 19 0 0 chr3 57955822 57956082 -169568496 + L1PA5 LINE L1 3661 3920 -2226 * 2684 128 99 18 chr3 57956079 57956741 -169567837 - L1MA6 LINE L1 -489 5811 5105 2183 148 5 34 chr3 57956785 57957007 -169567571 + L1 LINE L1 3918 4124 -2022 2336 100 0 3 chr3 57957007 57957307 -169567271 + AluSx SINE Alu 1 299 -13 2183 148 5 34 chr3 57957307 57957497 -169567081 + L1 LINE L1 4124 4318 -1828 * 6530 133 36 43 chr3 57957494 57959041 -169565537 + L1MA1 LINE L1 4054 5582 -720 2531 74 0 0 chr3 57959041 57959351 -169565227 + AluY SINE Alu 1 310 -1 6530 133 36 43 chr3 57959351 57960056 -169564522 + L1MA1 LINE L1 5582 6290 -12 3671 166 21 5 chr3 57960076 57960839 -169563739 + L1 LINE L1 4304 5078 -1068 2883 249 100 13 chr3 57961673 57962908 -169561670 - L1M4 LINE L1 -1477 4669 3328 243 250 60 0 chr3 57962909 57963009 -169561569 - L1M4 LINE L1 -2847 3299 3194 5309 162 38 14 chr3 57963070 57964304 -169560274 - L1PB2 LINE L1 -4 6147 4842 2051 142 33 41 chr3 57964304 57964671 -169559907 - THE1B LTR MaLR 0 364 1 5309 162 38 14 chr3 57964671 57965550 -169559028 - L1PB2 LINE L1 -1309 4842 3985 328 167 48 24 chr3 57965556 57965640 -169558938 - L1M4 LINE L1 -1466 4680 4595 1292 126 39 0 chr3 57966472 57966702 -169557876 - L1MA3 LINE L1 -31 6274 6036 2377 102 0 6 chr3 57966841 57967156 -169557422 - AluSq SINE Alu 0 313 1 1502 135 16 4 chr3 57967781 57968025 -169556553 - MSTB1 LTR MaLR 0 432 186 3265 146 76 0 chr3 57968029 57968645 -169555933 - L1MA5A LINE L1 0 6297 5635 188 33 0 33 chr3 57968669 57968699 -169555879 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 1757 159 13 29 chr3 57968737 57969046 -169555532 - AluJb SINE Alu -8 304 1 22 35 0 0 chr3 57969067 57969096 -169555482 + AT_rich Low_complexity Low_complexity 1 29 0 4308 129 8 0 chr3 57969096 57969762 -169554816 - L1PA13 LINE L1 -3 6160 5490 2440 14 7 0 chr3 57969762 57970038 -169554540 - AluY SINE Alu -5 306 29 270 0 0 0 chr3 57970053 57970083 -169554495 + (TG)n Simple_repeat Simple_repeat 2 31 0 8025 173 16 34 chr3 57970115 57970481 -169554097 - L1PB1 LINE L1 0 6867 6496 234 105 0 0 chr3 57970481 57970519 -169554059 + (TG)n Simple_repeat Simple_repeat 2 39 0 8025 173 16 34 chr3 57970519 57971353 -169553225 - L1PB1 LINE L1 -371 6496 5649 2108 120 3 0 chr3 57971353 57971637 -169552941 - AluSx SINE Alu -23 289 5 8025 173 16 34 chr3 57971637 57972224 -169552354 - L1PB1 LINE L1 -1218 5649 5053 180 0 0 0 chr3 57972224 57972244 -169552334 + (TTTTA)n Simple_repeat Simple_repeat 3 22 0 8025 173 16 34 chr3 57972244 57972348 -169552230 - L1PB1 LINE L1 -1814 5053 4949 2221 107 3 0 chr3 57972348 57972638 -169551940 + AluSq SINE Alu 1 291 -22 8025 173 16 34 chr3 57972638 57973715 -169550863 - L1PB1 LINE L1 -1918 4949 3927 2297 65 11 0 chr3 57974739 57975018 -169549560 + AluSp SINE Alu 14 295 -18 215 267 0 22 chr3 57976225 57976315 -169548263 + GA-rich Low_complexity Low_complexity 3 90 0 4451 150 46 20 chr3 57976376 57977192 -169547386 - L1PB1 LINE L1 -2926 3936 3142 1606 182 10 32 chr3 57977192 57977505 -169547073 - AluSx SINE Alu -6 306 1 4451 150 46 20 chr3 57977505 57978281 -169546297 - L1PB1 LINE L1 -3720 3142 2308 16767 186 31 22 chr3 57978281 57978731 -169545847 - L1P4 LINE L1 -707 6118 5674 2312 92 0 32 chr3 57978731 57979047 -169545531 - AluSx SINE Alu -6 306 1 16767 186 31 22 chr3 57979047 57980821 -169543757 - L1P4 LINE L1 -1151 5674 3918 2019 120 13 13 chr3 57980821 57981129 -169543449 - AluSq SINE Alu -5 308 1 16767 186 31 22 chr3 57981129 57982848 -169541730 - L1P4 LINE L1 -2907 3918 2216 1955 112 0 0 chr3 57982848 57983108 -169541470 - AluSc SINE Alu -7 302 43 16767 186 31 22 chr3 57983108 57983514 -169541064 - L1P4 LINE L1 -4609 2216 1815 2036 81 46 11 chr3 57983514 57983799 -169540779 - AluY SINE Alu -16 295 1 2361 95 3 0 chr3 57983800 57984106 -169540472 - AluSp SINE Alu -6 307 1 16767 186 31 22 chr3 57984106 57984915 -169539663 - L1P4 LINE L1 -5009 1816 903 1617 111 34 10 chr3 57985037 57985335 -169539243 - L1M2 LINE L1 -689 6250 5946 13160 219 41 14 chr3 57986015 57988504 -169536074 - L1M2 LINE L1 -810 5978 3559 1801 164 193 54 chr3 57988504 57989039 -169535539 - LTR10A LTR ERV1 0 609 1 13160 219 41 14 chr3 57989039 57990485 -169534093 - L1M2 LINE L1 -3229 3559 2154 5732 94 14 27 chr3 57990485 57992199 -169532379 - SVA Other Other -683 1386 5 13160 219 41 14 chr3 57992199 57994651 -169529927 - L1M2 LINE L1 -4634 2154 14 747 131 0 0 chr3 57994662 57994769 -169529809 - FRAM SINE Alu -6 170 64 988 158 21 16 chr3 57994771 57994961 -169529617 - MSTB1 LTR MaLR -241 191 1 1203 237 97 51 chr3 57994962 57995179 -169529399 + L1ME3A LINE L1 4093 4298 -1848 1548 189 56 11 chr3 57995179 57995449 -169529129 - AluJb SINE Alu -30 282 1 1203 237 97 51 chr3 57995449 57995941 -169528637 + L1ME3A LINE L1 4298 4835 -1311 604 294 61 6 chr3 57996256 57996582 -169527996 + L1ME3A LINE L1 4867 5210 -936 2031 256 72 44 chr3 57996603 57997292 -169527286 + L1ME3A LINE L1 5254 5922 -248 1742 153 19 0 chr3 57997292 57997554 -169527024 + AluJo SINE Alu 23 289 -23 2031 256 72 44 chr3 57997554 57997681 -169526897 + L1ME3A LINE L1 5922 6099 -71 2062 103 32 0 chr3 57997681 57997962 -169526616 + AluSq SINE Alu 1 290 -23 2031 256 72 44 chr3 57997962 57998031 -169526547 + L1ME3A LINE L1 6099 6165 -5 1155 205 42 23 chr3 57998084 57998391 -169526187 + L1ME2 LINE L1 5841 6153 -11 1568 152 24 59 chr3 57998524 57998813 -169525765 + AluJo SINE Alu 1 279 -33 224 210 0 16 chr3 57998814 57998876 -169525702 + GA-rich Low_complexity Low_complexity 4 64 0 308 225 28 0 chr3 57999018 57999089 -169525489 + L1ME3A LINE L1 5589 5661 -503 417 231 43 107 chr3 57999213 57999447 -169525131 - LTR41 LTR ERVL -11 762 544 1262 169 24 61 chr3 57999905 58000262 -169524316 - MLT2B1 LTR ERVL -83 331 1 241 329 0 0 chr3 58000263 58000342 -169524236 - LTR50 LTR ERVL -716 79 1 262 242 53 21 chr3 58000489 58000584 -169523994 + L1ME3A LINE L1 5679 5776 -2032 449 163 0 23 chr3 58000584 58000670 -169523908 - Tigger5 DNA MER2_type 0 2323 2240 1826 146 35 7 chr3 58000675 58000963 -169523615 + AluJo SINE Alu 12 307 -5 402 130 14 14 chr3 58001028 58001097 -169523481 - Tigger5 DNA MER2_type 0 2323 2255 271 218 0 0 chr3 58001070 58001125 -169523453 - Tigger5 DNA MER2_type -2268 55 1 * 326 292 36 18 chr3 58001132 58001300 -169523278 + L1ME3A LINE L1 5777 5947 -223 722 179 46 95 chr3 58001519 58001695 -169522883 - L1MD3 LINE L1 0 7995 7835 1569 194 3 3 chr3 58001695 58001979 -169522599 - AluJb SINE Alu -28 284 1 722 179 46 95 chr3 58001979 58002065 -169522513 - L1MD3 LINE L1 -160 7835 7746 247 162 0 59 chr3 58002158 58002226 -169522352 - HAL1 LINE L1 -132 2375 2312 2285 113 0 0 chr3 58002226 58002535 -169522043 - AluSc SINE Alu 0 309 1 484 255 139 5 chr3 58002604 58002820 -169521758 - HAL1 LINE L1 -287 2220 1976 639 243 45 65 chr3 58002870 58003162 -169521416 - HAL1 LINE L1 -684 1823 1538 1375 164 166 25 chr3 58003162 58003596 -169520982 - LTR54B LTR ERV1 -3 495 1 342 246 41 56 chr3 58003639 58003736 -169520842 - HAL1 LINE L1 -1169 1338 1241 2215 101 10 0 chr3 58003736 58004033 -169520545 - AluSx SINE Alu -12 300 1 342 246 41 56 chr3 58004033 58004203 -169520375 - HAL1 LINE L1 -1266 1241 1075 555 143 11 0 chr3 58004205 58004296 -169520282 - AluJb SINE Alu -2 310 219 2439 79 10 16 chr3 58004296 58004782 -169519796 - MER41A LTR ERV1 0 554 1 1055 181 13 35 chr3 58004782 58005009 -169519569 - AluJb SINE Alu -90 222 1 302 266 135 49 chr3 58005009 58005253 -169519325 - HAL1 LINE L1 -1426 1081 817 287 332 29 43 chr3 58005598 58005806 -169518772 - HAL1 LINE L1 -2108 399 195 2184 158 25 34 chr3 58006944 58007092 -169517486 + MER41B LTR ERV1 102 250 -228 2243 123 0 0 chr3 58007092 58007401 -169517177 + AluSx SINE Alu 1 309 -3 2184 158 25 34 chr3 58007401 58007717 -169516861 + MER41B LTR ERV1 250 466 -12 4504 155 35 46 chr3 58007808 58008710 -169515868 - L1PA16 LINE L1 -233 5933 5070 2519 53 0 3 chr3 58008710 58009012 -169515566 - AluY SINE Alu -10 301 1 4504 155 35 46 chr3 58009012 58009859 -169514719 - L1PA16 LINE L1 -1096 5070 4215 1863 171 10 3 chr3 58009915 58010208 -169514370 - AluJo SINE Alu -17 295 1 5783 23 1 14 chr3 58010551 58011227 -169513351 - SVA Other Other 0 1386 740 294 388 101 5 chr3 58011248 58011457 -169513121 - MIR SINE MIR -1 261 33 25 0 0 0 chr3 58012452 58012477 -169512101 + AT_rich Low_complexity Low_complexity 1 25 0 614 285 150 8 chr3 58012588 58012855 -169511723 + HAL1 LINE L1 16 320 -2187 899 274 34 34 chr3 58012872 58013193 -169511385 + HAL1 LINE L1 388 708 -1799 519 236 91 12 chr3 58013193 58013358 -169511220 + LTR50 LTR ERVL 1 178 -617 531 270 116 0 chr3 58013534 58013793 -169510785 + LTR50 LTR ERVL 506 794 -1 2124 235 75 36 chr3 58013830 58014630 -169509948 + HAL1 LINE L1 741 1571 -936 1905 179 11 19 chr3 58014642 58015010 -169509568 - MLT1A1 LTR MaLR 0 365 1 555 77 13 0 chr3 58015020 58015098 -169509480 - MADE1 DNA Mariner 0 80 2 385 278 72 58 chr3 58015141 58015364 -169509214 - L1MDa LINE L1 -4115 2606 2375 1927 121 62 0 chr3 58015364 58015637 -169508941 - AluSx SINE Alu -16 296 7 385 278 72 58 chr3 58015637 58015776 -169508802 - L1MDa LINE L1 -4346 2375 2239 2267 123 0 13 chr3 58015803 58016119 -169508459 - AluSx SINE Alu 0 312 1 2244 111 0 0 chr3 58016127 58016424 -169508154 - AluSg SINE Alu -11 299 3 216 0 0 0 chr3 58016481 58016505 -169508073 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 408 271 58 9 chr3 58016527 58016751 -169507827 - L1MDa LINE L1 -4549 1991 1759 363 256 34 26 chr3 58017180 58017297 -169507281 - MARNA DNA Mariner -408 178 61 2695 85 19 0 chr3 58018222 58018600 -169505978 - MER41B LTR ERV1 -86 549 165 354 23 0 0 chr3 58018600 58018643 -169505935 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 6200 71 11 1 chr3 58018652 58019495 -169505083 - L1PA7 LINE L1 0 6154 5304 3109 81 0 0 chr3 58019493 58019935 -169504643 + L1PA7 LINE L1 4858 5299 -847 * 1213 87 6 0 chr3 58019936 58020109 -169504469 - MER41B LTR ERV1 -461 174 1 15511 104 37 20 chr3 58020109 58022712 -169501866 - MER41B-int LTR ERV1 0 5946 3300 741 124 0 0 chr3 58022700 58022821 -169501757 - MER41B-int LTR ERV1 -3001 2945 2825 * 901 165 0 0 chr3 58022817 58022975 -169501603 - MER41-int LTR ERV1 -1464 4482 4325 * 2816 134 106 37 chr3 58022974 58023570 -169501008 - MER41-int LTR ERV1 -4036 3501 2865 6101 97 42 79 chr3 58023577 58024676 -169499902 - THE1C-int LTR MaLR -521 1059 2 2518 112 16 13 chr3 58024677 58025051 -169499527 - THE1C LTR MaLR 0 375 1 611 256 24 89 chr3 58025091 58025432 -169499146 - L2 LINE L2 -245 3068 2721 317 156 16 94 chr3 58026423 58026487 -169498091 + L1ME1 LINE L1 5962 6020 -146 2988 169 18 22 chr3 58026533 58027106 -169497472 - L1MC1 LINE L1 -465 6366 5792 642 60 0 0 chr3 58027106 58027189 -169497389 + (TCCCC)n Simple_repeat Simple_repeat 4 86 0 2328 102 0 0 chr3 58027189 58027479 -169497099 - AluSg SINE Alu -20 290 1 2988 169 18 22 chr3 58027479 58028031 -169496547 - L1MC1 LINE L1 -1037 5794 5240 272 200 0 0 chr3 58028028 58028083 -169496495 - L1MC1 LINE L1 -6470 72 18 * 188 380 113 20 chr3 58028711 58028861 -169495717 + MIR3 SINE MIR 31 194 -14 1086 193 24 9 chr3 58029933 58030146 -169494432 - MER20 DNA MER1_type -3 216 1 21 36 0 0 chr3 58030225 58030253 -169494325 + AT_rich Low_complexity Low_complexity 1 28 0 421 285 75 35 chr3 58030529 58030829 -169493749 - MLT1H1 LTR MaLR 0 555 261 294 79 0 0 chr3 58031405 58031443 -169493135 - U2 snRNA snRNA -150 38 1 1766 167 0 17 chr3 58031647 58031934 -169492644 - AluJo SINE Alu -30 282 1 1830 144 55 0 chr3 58032354 58032645 -169491933 + AluSx SINE Alu 1 307 -5 239 118 0 0 chr3 58033156 58033190 -169491388 + Alu SINE Alu 186 219 -80 397 224 93 16 chr3 58033214 58033397 -169491181 + L1MC5 LINE L1 7712 7908 -53 305 225 50 0 chr3 58033401 58033481 -169491097 + MIR SINE MIR 153 236 -26 433 163 11 22 chr3 58033693 58033785 -169490793 - MER68 LTR ERV1 -65 497 407 5939 252 41 31 chr3 58033785 58035015 -169489563 - L1PA15-16 LINE L1 -2355 4494 3227 2150 149 3 0 chr3 58035015 58035317 -169489261 + AluSx SINE Alu 1 303 -9 5939 252 41 31 chr3 58035317 58036423 -169488155 - L1PA15-16 LINE L1 -3622 3227 2134 1758 211 0 0 chr3 58036449 58036747 -169487831 - AluJb SINE Alu -13 299 2 447 137 0 0 chr3 58036757 58036830 -169487748 + (CA)n Simple_repeat Simple_repeat 2 74 0 988 186 6 0 chr3 58036863 58037030 -169487548 - AluJb SINE Alu -7 305 138 804 164 0 0 chr3 58037216 58037338 -169487240 + FLAM_C SINE Alu 2 123 -10 12068 160 12 23 chr3 58037338 58037512 -169487066 - L1PA15-16 LINE L1 -4746 2103 1929 1926 109 76 0 chr3 58037512 58037788 -169486790 + AluSx SINE Alu 1 297 -15 12068 160 12 23 chr3 58037788 58039729 -169484849 - L1PA15-16 LINE L1 -4920 1929 12 255 204 51 31 chr3 58039770 58039868 -169484710 - L1M4 LINE L1 -935 5211 5112 2133 141 25 10 chr3 58040315 58040720 -169483858 - L1MA4 LINE L1 -11 6289 5879 6397 197 21 28 chr3 58040730 58041842 -169482736 - L1PA16 LINE L1 -20 7584 6465 1444 197 27 27 chr3 58041842 58042142 -169482436 - AluJo SINE Alu -12 300 1 6397 197 21 28 chr3 58042142 58042777 -169481801 - L1PA16 LINE L1 -1139 6465 5827 231 114 0 0 chr3 58042777 58042812 -169481766 + (TTGTG)n Simple_repeat Simple_repeat 4 38 0 6397 197 21 28 chr3 58042812 58043050 -169481528 - L1PA16 LINE L1 -1777 5827 5589 245 29 29 0 chr3 58043050 58043084 -169481494 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 6435 75 47 9 chr3 58043086 58044069 -169480509 - L1PA11 LINE L1 -10 6164 5169 6397 197 21 28 chr3 58044069 58044872 -169479706 - L1PA16 LINE L1 -2016 5588 4820 6962 57 9 0 chr3 58044880 58045909 -169478669 + L1PA6 LINE L1 5152 6188 0 10440 145 67 19 chr3 58045909 58046660 -169477918 - L1PA16 LINE L1 -4307 3277 2564 2370 89 0 7 chr3 58046660 58046964 -169477614 - AluSc SINE Alu -7 302 1 10440 145 67 19 chr3 58046964 58048818 -169475760 - L1PA16 LINE L1 -5020 2564 1 1358 265 51 41 chr3 58048821 58049631 -169474947 - L1M4c LINE L1 -3420 2962 1657 396 250 0 17 chr3 58049638 58049758 -169474820 - L1PBb LINE L1 -5321 1528 1411 448 382 65 37 chr3 58050684 58051176 -169473402 - L1PBb LINE L1 -6333 516 11 3362 165 33 9 chr3 58051188 58052450 -169472128 - L1MA4 LINE L1 -404 5896 4610 18124 169 28 20 chr3 58052475 58053673 -169470905 - L1MA2 LINE L1 -1 7722 6534 2078 114 0 0 chr3 58053673 58053946 -169470632 + AluSc SINE Alu 1 273 -36 18124 169 28 20 chr3 58053946 58055542 -169469036 - L1MA2 LINE L1 -1189 6534 4951 2429 94 0 0 chr3 58055542 58055839 -169468739 - AluSc SINE Alu -12 297 1 1852 174 0 3 chr3 58055842 58056141 -169468437 - AluJb SINE Alu -14 298 1 18124 169 28 20 chr3 58056141 58056447 -169468131 - L1MA2 LINE L1 -2773 4950 4648 2419 74 0 0 chr3 58056447 58056743 -169467835 - AluY SINE Alu -15 296 1 18124 169 28 20 chr3 58056743 58056819 -169467759 - L1MA2 LINE L1 -3075 4648 4574 1931 164 10 3 chr3 58056819 58057129 -169467449 - AluSx SINE Alu 0 312 1 18124 169 28 20 chr3 58057129 58061509 -169463069 - L1MA2 LINE L1 -3149 4574 102 231 88 0 0 chr3 58061509 58061543 -169463035 + (T)n Simple_repeat Simple_repeat 1 34 0 4499 177 14 31 chr3 58061617 58061683 -169462895 - L1MA4 LINE L1 -1532 4614 4548 1678 188 13 22 chr3 58061683 58061997 -169462581 + AluJo SINE Alu 2 312 0 4499 177 14 31 chr3 58061997 58062335 -169462243 - L1MA4 LINE L1 -1598 4548 4206 2669 62 34 0 chr3 58062335 58062689 -169461889 + L1PA8 LINE L1 5805 6170 -2 4499 177 14 31 chr3 58062689 58063315 -169461263 - L1MA4 LINE L1 -1940 4206 3600 27 96 0 0 chr3 58063854 58063937 -169460641 + AT_rich Low_complexity Low_complexity 1 83 0 1349 122 75 0 chr3 58064313 58064527 -169460051 - MER30 DNA MER1_type 0 230 1 1273 118 0 0 chr3 58065120 58065298 -169459280 - AluSc SINE Alu 0 309 132 24513 68 0 3 chr3 58065302 58068681 -169455897 + L1P LINE L1 711 4078 -2068 1477 191 84 4 chr3 58068825 58069098 -169455480 + AluJb SINE Alu 1 295 -17 1527 192 133 7 chr3 58069099 58069526 -169455052 + L1MB7 LINE L1 5306 5786 -388 2619 146 23 27 chr3 58069610 58070095 -169454483 + MER50 LTR ERV1 169 651 -83 1569 180 33 3 chr3 58070095 58070428 -169454150 + L1MB7 LINE L1 5785 6127 -57 4896 182 68 65 chr3 58070429 58071118 -169453460 + Cheshire DNA MER1_type 921 1607 -813 2247 113 3 0 chr3 58071118 58071418 -169453160 + AluSq SINE Alu 1 301 -12 4896 182 68 65 chr3 58071418 58071529 -169453049 + Cheshire DNA MER1_type 1607 1716 -704 1252 167 66 4 chr3 58071529 58071787 -169452791 - L1PA16 LINE L1 -5 6161 5888 2243 83 0 7 chr3 58071795 58072073 -169452505 - AluSx SINE Alu -6 306 31 4896 182 68 65 chr3 58072073 58072319 -169452259 + Cheshire DNA MER1_type 1722 1966 -454 1765 179 10 3 chr3 58072319 58072447 -169452131 + AluJo SINE Alu 6 132 -180 207 0 0 0 chr3 58072447 58072470 -169452108 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1765 179 10 3 chr3 58072470 58072631 -169451947 + AluJo SINE Alu 132 297 -15 4896 182 68 65 chr3 58072631 58073010 -169451568 + Cheshire DNA MER1_type 1966 2418 -2 349 288 72 14 chr3 58073012 58073151 -169451427 + L1MEc LINE L1 1865 2011 -4385 1668 143 12 8 chr3 58073185 58073443 -169451135 - AluSx SINE Alu -14 298 40 2414 83 0 0 chr3 58073447 58073748 -169450830 - AluSc SINE Alu -8 301 1 2140 154 8 26 chr3 58073914 58074296 -169450282 + THE1C LTR MaLR 1 375 0 1715 70 22 0 chr3 58074489 58074718 -169449860 + L1PA8 LINE L1 5939 6172 0 2266 75 16 26 chr3 58075349 58075654 -169448924 + AluSc SINE Alu 1 302 -7 2076 140 3 37 chr3 58075682 58076031 -169448547 - MER1B DNA MER1_type 0 337 1 213 195 0 0 chr3 58076926 58076967 -169447611 + GA-rich Low_complexity Low_complexity 1 41 0 767 183 0 0 chr3 58077670 58077796 -169446782 + FLAM_C SINE Alu 1 126 -7 2473 219 49 52 chr3 58077796 58078103 -169446475 + L1M4 LINE L1 4070 4376 -1770 2308 103 0 0 chr3 58078103 58078395 -169446183 - AluSx SINE Alu -20 292 1 2473 219 49 52 chr3 58078395 58079027 -169445551 + L1M4 LINE L1 4376 5006 -1140 1293 190 82 0 chr3 58079027 58079295 -169445283 + MSTB LTR MaLR 1 290 -136 7194 57 0 0 chr3 58079395 58080506 -169444072 + L1PA5 LINE L1 5042 6152 -2 8533 62 2 0 chr3 58080616 58082488 -169442090 + L1PA5 LINE L1 4274 6151 -3 1427 192 32 14 chr3 58082559 58082903 -169441675 - L1MDa LINE L1 -4381 2159 1810 23 68 0 0 chr3 58082907 58082951 -169441627 + AT_rich Low_complexity Low_complexity 1 44 0 1150 213 90 10 chr3 58082991 58083301 -169441277 - L1MB5 LINE L1 -61 6113 5779 2125 114 17 7 chr3 58083301 58083598 -169440980 - AluSq SINE Alu -7 306 7 343 200 0 0 chr3 58083725 58083795 -169440783 - L1MB5 LINE L1 -402 5772 5703 * 722 184 98 17 chr3 58083790 58084024 -169440554 - L1MDa LINE L1 -4711 1829 1577 4142 159 39 17 chr3 58084046 58084862 -169439716 - L1MC2 LINE L1 -15 6329 5496 1920 244 44 56 chr3 58084912 58085493 -169439085 - L1MDa LINE L1 -5865 675 101 198 0 0 0 chr3 58085493 58085515 -169439063 + (TA)n Simple_repeat Simple_repeat 2 23 0 1920 244 44 56 chr3 58085515 58085593 -169438985 - L1MDa LINE L1 -6439 101 24 2944 17 0 12 chr3 58085716 58086062 -169438516 - L1PA3 LINE L1 -3 6152 5811 17476 80 31 6 chr3 58086062 58089283 -169435295 + L1PA7 LINE L1 2882 6148 -6 404 185 9 74 chr3 58089293 58089401 -169435177 + MER65A LTR ERV1 310 410 -35 1024 100 7 0 chr3 58089415 58089565 -169435013 + L1PA11 LINE L1 6023 6173 -1 23 0 0 0 chr3 58089577 58089600 -169434978 + AT_rich Low_complexity Low_complexity 1 23 0 2594 233 40 48 chr3 58090113 58090667 -169433911 - L1M1 LINE L1 -4161 2050 1493 2512 57 0 21 chr3 58090667 58090998 -169433580 - L1PA5 LINE L1 -5 6149 5826 2594 233 40 48 chr3 58090998 58091816 -169432762 - L1M1 LINE L1 -4718 1493 829 800 319 61 28 chr3 58092092 58092521 -169432057 - L1M1 LINE L1 -5695 446 4 262 248 23 27 chr3 58092591 58092742 -169431836 - L1ME LINE L1 -5867 203 53 272 237 122 46 chr3 58093884 58094015 -169430563 + LTR33A LTR ERVL 379 519 -4 28 48 0 0 chr3 58094106 58094148 -169430430 + AT_rich Low_complexity Low_complexity 1 42 0 226 216 40 14 chr3 58094190 58094264 -169430314 - L1ME4a LINE L1 -80 6041 5966 24 32 0 0 chr3 58095010 58095041 -169429537 + AT_rich Low_complexity Low_complexity 1 31 0 1456 207 50 0 chr3 58095432 58095693 -169428885 + AluJo SINE Alu 11 284 -28 450 0 0 0 chr3 58095693 58095743 -169428835 + (CA)n Simple_repeat Simple_repeat 2 51 0 28833 104 14 70 chr3 58095919 58101235 -169423343 - L1P LINE L1 -1118 5028 12 339 97 97 0 chr3 58101252 58101314 -169423264 - L1PA11 LINE L1 -139 6035 5968 * 9735 141 37 1 chr3 58101304 58103064 -169421514 - L1M1 LINE L1 -762 6803 4981 26142 49 9 8 chr3 58103080 58107117 -169417461 - L1PA5 LINE L1 -7 6147 2094 11505 200 20 17 chr3 58107113 58109631 -169414947 - L1M1 LINE L1 -2567 4998 2474 * 2994 210 28 7 chr3 58109686 58110300 -169414278 - L1M1 LINE L1 -6926 639 13 * 5309 177 28 29 chr3 58110298 58111487 -169413091 - L1 LINE L1 -813 6752 5566 8437 217 29 43 chr3 58111510 58113396 -169411182 - L1 LINE L1 -5696 1869 11 234 0 0 0 chr3 58113405 58113431 -169411147 + (TTTTA)n Simple_repeat Simple_repeat 3 28 0 2687 213 42 18 chr3 58113431 58114154 -169410424 - L1 LINE L1 -2868 4299 3560 6736 204 22 46 chr3 58114173 58115627 -169408951 - L1 LINE L1 -5488 1680 262 290 91 68 0 chr3 58115627 58115671 -169408907 - Alu SINE Alu -18 284 238 536 123 14 0 chr3 58115671 58115744 -169408834 - AluY SINE Alu -37 274 201 702 146 0 83 chr3 58115868 58115935 -169408643 - L1 LINE L1 -7024 144 94 1929 94 27 97 chr3 58115935 58116264 -169408314 + AluYb8 SINE Alu 1 306 -12 702 146 0 83 chr3 58116264 58116340 -169408238 - L1 LINE L1 -7074 94 13 251 284 121 50 chr3 58116438 58116677 -169407901 - L1 LINE L1 -2346 3800 3545 18260 54 6 0 chr3 58117184 58119482 -169405096 - L1P LINE L1 -1134 5012 2702 9554 133 21 6 chr3 58119485 58120960 -169403618 - L1P LINE L1 -4649 1497 1 4011 113 7 7 chr3 58121054 58121645 -169402933 - L1PB1 LINE L1 0 6151 5561 270 290 0 0 chr3 58121648 58121741 -169402837 - L1 LINE L1 -3103 3043 2951 341 321 29 14 chr3 58122080 58122220 -169402358 - ERVL LTR ERVL -543 5221 5080 234 0 0 0 chr3 58122284 58122310 -169402268 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 630 329 48 11 chr3 58122328 58123079 -169401499 - ERVL LTR ERVL -632 4853 4132 1004 187 0 6 chr3 58123679 58123850 -169400728 + FAM SINE Alu 1 170 -15 1416 171 19 19 chr3 58123850 58124108 -169400470 - MER65C LTR ERV1 -47 414 157 1172 307 3 107 chr3 58124115 58124424 -169400154 - AluSx SINE Alu 0 312 36 327 250 59 66 chr3 58124424 58124576 -169400002 - MER65C LTR ERV1 -310 151 1 216 200 0 22 chr3 58124701 58124746 -169399832 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 1093 287 163 7 chr3 58125155 58125569 -169399009 + L2 LINE L2 2599 3091 -222 1914 126 17 7 chr3 58125594 58125895 -169398683 + L1MA4 LINE L1 5992 6295 -5 1484 218 19 31 chr3 58226381 58226798 -169297780 - L1MB4 LINE L1 -1 6179 5768 2603 71 0 0 chr3 58226800 58227111 -169297467 - AluY SINE Alu 0 311 1 5613 93 1 0 chr3 58227122 58227844 -169296734 - L1PA13 LINE L1 -1 6162 5440 1955 112 45 0 chr3 58227869 58228165 -169296413 - AluSg SINE Alu 0 308 1 10945 195 44 17 chr3 58228177 58232086 -169292492 - L1PA13 LINE L1 -2580 4217 195 5668 183 54 25 chr3 58232087 58233486 -169291092 - L1MB4 LINE L1 -764 5416 4015 1999 141 0 26 chr3 58233716 58234021 -169290557 + AluSx SINE Alu 1 297 -15 183 80 0 0 chr3 58234051 58234076 -169290502 + (T)n Simple_repeat Simple_repeat 1 25 0 2281 95 7 7 chr3 58236455 58236761 -169287817 + AluSx SINE Alu 1 306 -6 1966 162 3 0 chr3 58236771 58237080 -169287498 + AluSx SINE Alu 1 310 -2 1028 181 22 0 chr3 58237402 58237584 -169286994 - MER5A DNA MER1_type 0 189 4 21 36 0 0 chr3 58238965 58238993 -169285585 + AT_rich Low_complexity Low_complexity 1 28 0 2320 94 0 0 chr3 58238994 58239291 -169285287 + AluSx SINE Alu 1 297 -15 319 164 0 0 chr3 58239291 58239346 -169285232 + L1MC4 LINE L1 6649 6703 -1339 854 208 102 20 chr3 58239969 58240166 -169284412 + MER58C DNA MER1_type 1 213 -2 324 280 136 0 chr3 58240616 58240734 -169283844 + MER5A DNA MER1_type 34 167 -22 236 264 126 88 chr3 58240618 58240777 -169283801 - MER5A DNA MER1_type -24 165 1 * 1351 217 16 32 chr3 58241548 58241861 -169282717 - AluJo SINE Alu -4 308 1 23 33 0 0 chr3 58241866 58241896 -169282682 + AT_rich Low_complexity Low_complexity 1 30 0 31 26 0 0 chr3 58242151 58242189 -169282389 + AT_rich Low_complexity Low_complexity 1 38 0 413 277 125 16 chr3 58244474 58244658 -169279920 - L3b LINE CR1 -68 1515 1312 2310 107 0 0 chr3 58247788 58248086 -169276492 + AluSx SINE Alu 1 298 -14 207 0 0 0 chr3 58248339 58248362 -169276216 + (TTG)n Simple_repeat Simple_repeat 2 24 0 393 134 0 103 chr3 58248400 58248497 -169276081 - L1MA7 LINE L1 0 6291 6205 1158 157 37 0 chr3 58248516 58248732 -169275846 - L1MA7 LINE L1 -299 5992 5769 5705 107 24 13 chr3 58248732 58249138 -169275440 - L1PA16 LINE L1 0 6166 5766 2402 81 0 0 chr3 58249138 58249434 -169275144 - AluSc SINE Alu -13 296 1 5705 107 24 13 chr3 58249434 58249741 -169274837 - L1PA16 LINE L1 -400 5766 5464 2367 108 0 0 chr3 58249741 58250046 -169274532 - AluSx SINE Alu -5 307 3 5705 107 24 13 chr3 58250046 58250591 -169273987 - L1PA16 LINE L1 -702 5464 4938 1019 101 20 0 chr3 58250758 58250906 -169273672 - L1PB2 LINE L1 -2 6149 5999 3530 106 4 1 chr3 58250908 58251477 -169273101 - L1PB2 LINE L1 -410 5741 5171 2511 210 11 35 chr3 58251477 58251928 -169272650 - L1PB2 LINE L1 -1226 4920 4460 486 96 0 0 chr3 58251928 58252001 -169272577 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 2141 109 0 11 chr3 58252001 58252284 -169272294 - AluSx SINE Alu -28 284 5 2511 210 11 35 chr3 58252284 58252454 -169272124 - L1PB2 LINE L1 -1684 4462 4313 3229 125 14 45 chr3 58252454 58253126 -169271452 - L1MA7 LINE L1 -512 5788 5086 358 286 31 42 chr3 58254088 58254280 -169270298 - L1MC5 LINE L1 -30 7931 7742 2442 119 9 29 chr3 58256327 58256748 -169267830 - L1MB3 LINE L1 -2 6181 5769 1960 158 0 0 chr3 58256750 58257060 -169267518 - AluY SINE Alu 0 311 2 1008 165 16 0 chr3 58257076 58257270 -169267308 - L1PA13 LINE L1 -6 6157 5961 277 312 74 16 chr3 58257424 58257613 -169266965 - MIR SINE MIR -42 220 21 1378 158 0 5 chr3 58257845 58258060 -169266518 - AluJb SINE Alu -12 300 87 219 302 47 19 chr3 58258964 58259070 -169265508 - L3 LINE CR1 -154 1423 1315 212 0 36 0 chr3 58259075 58259103 -169265475 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 394 274 19 32 chr3 58259645 58259802 -169264776 - L2 LINE L2 -1 3312 3158 6780 65 14 58 chr3 58259906 58261899 -169262679 + SVA Other Other 130 1383 -3 23 0 0 0 chr3 58261899 58261922 -169262656 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr3 58261922 58261947 -169262631 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2089 130 0 0 chr3 58261949 58262233 -169262345 + AluSx SINE Alu 1 284 -28 180 0 0 0 chr3 58262237 58262257 -169262321 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 327 301 174 15 chr3 58262259 58262455 -169262123 - L2 LINE L2 -176 3137 2911 213 39 0 0 chr3 58262456 58262482 -169262096 + (TTTTTG)n Simple_repeat Simple_repeat 4 29 0 34933 65 6 4 chr3 58262482 58267787 -169256791 - L1PA5 LINE L1 0 6154 847 760 83 0 0 chr3 58267787 58267883 -169256695 - L1PA5 LINE L1 -6050 96 1 2089 122 0 14 chr3 58267886 58268182 -169256396 - AluSx SINE Alu -19 293 2 2111 136 0 3 chr3 58268194 58268503 -169256075 - AluSq SINE Alu -1 312 5 939 95 0 0 chr3 58270120 58270246 -169254332 - AluY SINE Alu -16 295 170 2263 117 0 7 chr3 58272316 58272623 -169251955 + AluSx SINE Alu 5 309 -3 32141 106 18 57 chr3 58272736 58276158 -169248420 + L1PA7 LINE L1 12 3565 -2589 2319 78 0 0 chr3 58276158 58276472 -169248106 + AluY SINE Alu 1 314 0 32141 106 18 57 chr3 58276472 58278986 -169245592 + L1PA7 LINE L1 3565 5670 -484 2250 119 0 3 chr3 58278986 58279298 -169245280 - AluSq SINE Alu -2 311 1 32141 106 18 57 chr3 58279298 58279755 -169244823 + L1PA7 LINE L1 5670 6143 -11 672 167 0 0 chr3 58279852 58279954 -169244624 + AluJb SINE Alu 195 296 -16 330 45 0 0 chr3 58280707 58280751 -169243827 + (TC)n Simple_repeat Simple_repeat 2 45 0 367 112 56 0 chr3 58280751 58280840 -169243738 + (TA)n Simple_repeat Simple_repeat 2 95 0 579 286 87 13 chr3 58281386 58281631 -169242947 - MIR SINE MIR 0 262 3 307 170 0 0 chr3 58282865 58282912 -169241666 - MLT1A1 LTR MaLR -3 362 316 2419 86 7 0 chr3 58283202 58283506 -169241072 + AluY SINE Alu 1 306 -5 330 260 48 19 chr3 58284293 58284397 -169240181 - MIR SINE MIR -62 146 40 1638 191 3 14 chr3 58284815 58285108 -169239470 + AluJo SINE Alu 1 290 -22 331 296 17 35 chr3 58286982 58287097 -169237481 + L2 LINE L2 3200 3312 -1 292 219 14 14 chr3 58288985 58289058 -169235520 - MIR SINE MIR -5 257 185 258 281 96 30 chr3 58289105 58289240 -169235338 - MIR SINE MIR -1 261 118 2137 113 7 17 chr3 58289286 58289578 -169235000 + AluSq SINE Alu 1 289 -24 387 158 0 0 chr3 58291087 58291144 -169233434 + FRAM/FAM SINE Alu 21 77 -98 550 227 157 52 chr3 58291202 58291491 -169233087 - HAL1 LINE L1 -109 2398 2066 1387 98 133 0 chr3 58291491 58291594 -169232984 + MER30 DNA MER1_type 1 89 -141 288 0 0 0 chr3 58291594 58291626 -169232952 + (TA)n Simple_repeat Simple_repeat 2 33 0 1387 98 133 0 chr3 58291626 58291725 -169232853 + MER30 DNA MER1_type 89 230 0 550 227 157 52 chr3 58291725 58291779 -169232799 - HAL1 LINE L1 -441 2066 2019 437 286 68 64 chr3 58291930 58292210 -169232368 - HAL1 LINE L1 -1601 906 626 2169 118 13 7 chr3 58292213 58292551 -169232027 - LTR10C LTR ERV1 -43 590 229 327 187 40 0 chr3 58292551 58292626 -169231952 - L1MB7 LINE L1 -14 6170 6093 1650 217 0 18 chr3 58292627 58292682 -169231896 + L1M4 LINE L1 3453 3507 -2639 2257 97 3 34 chr3 58292682 58293003 -169231575 + AluSp SINE Alu 3 313 0 1650 217 0 18 chr3 58293003 58293362 -169231216 + L1M4 LINE L1 3507 3844 -2302 285 379 57 7 chr3 58293369 58293651 -169230927 + L1M3d LINE L1 1 296 -5595 * 9415 221 58 23 chr3 58293618 58295966 -169228612 + L1MA7 LINE L1 835 2792 -4694 2145 119 0 7 chr3 58295971 58296264 -169228314 + AluSg SINE Alu 1 291 -19 6111 163 35 14 chr3 58296274 58297620 -169226958 + L1PA15 LINE L1 4124 5489 -676 1319 181 19 33 chr3 58297623 58297894 -169226684 + AluJo SINE Alu 39 305 -7 22 0 0 0 chr3 58297917 58297939 -169226639 + AT_rich Low_complexity Low_complexity 1 22 0 4616 98 19 28 chr3 58297939 58298431 -169226147 + L1PA15 LINE L1 5477 5963 -202 2256 120 0 0 chr3 58298431 58298731 -169225847 + AluSx SINE Alu 4 303 -9 4616 98 19 28 chr3 58298731 58298930 -169225648 + L1PA15 LINE L1 5963 6162 -3 399 106 0 0 chr3 58299192 58299258 -169225320 + (TG)n Simple_repeat Simple_repeat 2 67 0 1584 104 69 0 chr3 58299390 58299621 -169224957 + L1PA15 LINE L1 5768 6014 -151 1039 195 61 45 chr3 58299636 58300040 -169224538 + L1MA7 LINE L1 3294 3715 -3850 7660 32 4 6 chr3 58300040 58301021 -169223557 + L1PA5 LINE L1 5175 6154 0 1039 195 61 45 chr3 58301021 58301114 -169223464 + L1MA7 LINE L1 3715 3805 -3760 2255 100 13 0 chr3 58301117 58301416 -169223162 + AluSq SINE Alu 1 303 -10 5598 185 39 19 chr3 58301417 58302808 -169221770 + L1MA7 LINE L1 4343 5796 -1769 983 105 0 0 chr3 58302808 58302932 -169221646 + FLAM_C SINE Alu 1 124 -19 1382 138 0 14 chr3 58303003 58303213 -169221365 - AluSg/x SINE Alu -19 293 87 5409 148 44 18 chr3 58303215 58304715 -169219863 + L1MA7 LINE L1 5835 7386 -324 2543 71 0 0 chr3 58304715 58305025 -169219553 + AluY SINE Alu 1 310 -1 5409 148 44 18 chr3 58305025 58305359 -169219219 + L1MA7 LINE L1 7386 7710 0 1188 246 23 49 chr3 58305367 58305428 -169219150 + L1M4 LINE L1 3846 3907 -2239 2483 145 48 7 chr3 58305428 58305843 -169218735 - MSTB1 LTR MaLR 0 432 1 1188 246 23 49 chr3 58305843 58306168 -169218410 + L1M4 LINE L1 3907 4222 -1924 1201 169 14 10 chr3 58306168 58306375 -169218203 - AluJo SINE Alu -18 294 87 712 218 37 5 chr3 58306376 58306564 -169218014 + L1M4 LINE L1 4217 4410 -1736 2897 199 59 28 chr3 58306581 58306798 -169217780 + L1M2 LINE L1 4616 4825 -1384 2152 65 0 4 chr3 58306798 58307060 -169217518 - AluY SINE Alu -15 296 36 2897 199 59 28 chr3 58307060 58307155 -169217423 + L1M2 LINE L1 4825 4916 -1293 2325 98 3 3 chr3 58307155 58307460 -169217118 + AluSx SINE Alu 1 305 -7 2897 199 59 28 chr3 58307460 58307976 -169216602 + L1M2 LINE L1 4916 5463 -746 1389 174 16 99 chr3 58307976 58308094 -169216484 + AluJo SINE Alu 1 127 -185 189 0 0 0 chr3 58308094 58308115 -169216463 + (TAA)n Simple_repeat Simple_repeat 2 22 0 1389 174 16 99 chr3 58308115 58308318 -169216260 + AluJo SINE Alu 127 295 -17 2897 199 59 28 chr3 58308318 58308343 -169216235 + L1M2 LINE L1 5463 5486 -723 1030 277 27 17 chr3 58308337 58308741 -169215837 - L1M4 LINE L1 -2558 4086 3679 * 26206 157 18 27 chr3 58308725 58315231 -169209347 - L1PA10 LINE L1 -4 6479 11 2396 224 30 44 chr3 58315241 58316021 -169208557 - L1M4 LINE L1 -3372 3272 2541 447 52 0 0 chr3 58316023 58316081 -169208497 + (TG)n Simple_repeat Simple_repeat 2 59 0 5939 197 57 77 chr3 58316082 58316148 -169208430 - L1M4 LINE L1 -4660 1986 1920 1680 157 3 85 chr3 58316148 58316479 -169208099 - AluJo SINE Alu -2 310 7 5939 197 57 77 chr3 58316479 58317451 -169207127 - L1M4 LINE L1 -4726 1920 930 1610 201 14 3 chr3 58317451 58317734 -169206844 - AluJo SINE Alu -24 288 3 5939 197 57 77 chr3 58317734 58318537 -169206041 - L1M4 LINE L1 -5716 930 186 11803 36 8 30 chr3 58318537 58319955 -169204623 - SVA Other Other 0 1386 1 5939 197 57 77 chr3 58319955 58320123 -169204455 - L1M4 LINE L1 -6460 186 16 334 214 153 30 chr3 58321971 58322102 -169202476 - MIR3 SINE MIR -21 187 41 553 310 66 16 chr3 58325985 58326243 -169198335 + L3 LINE CR1 1301 1571 -6 27 0 0 0 chr3 58326303 58326330 -169198248 + AT_rich Low_complexity Low_complexity 1 27 0 3454 216 54 13 chr3 58326330 58327583 -169196995 - L1ME1 LINE L1 -18 6148 4849 439 125 0 0 chr3 58327678 58327742 -169196836 + L1MA7 LINE L1 6044 6107 -184 1222 107 0 0 chr3 58327742 58327943 -169196635 + AluSg/x SINE Alu 126 326 0 1051 109 46 0 chr3 58327943 58328117 -169196461 + L1MA7 LINE L1 6107 6288 -3 1358 218 58 38 chr3 58328121 58328417 -169196161 - L1ME1 LINE L1 -1286 4860 4550 2062 135 3 0 chr3 58328417 58328705 -169195873 + AluSx SINE Alu 1 289 -23 1358 218 58 38 chr3 58328705 58328877 -169195701 - L1ME1 LINE L1 -1596 4550 4383 1200 226 98 15 chr3 58329145 58329481 -169195097 - L1ME1 LINE L1 -1757 4389 4026 2344 110 0 0 chr3 58329904 58330213 -169194365 + AluSc SINE Alu 1 309 0 16875 116 22 125 chr3 58330350 58332510 -169192068 + L1PA7 LINE L1 12 1661 -4485 2327 112 0 3 chr3 58332510 58332822 -169191756 - AluY SINE Alu 0 311 1 16875 116 22 125 chr3 58332822 58334244 -169190334 + L1PA7 LINE L1 1661 3227 -2919 10172 80 11 1 chr3 58334244 58336392 -169188186 + L1PA7 LINE L1 3991 6154 0 2203 91 0 70 chr3 58336569 58336898 -169187680 - AluSg SINE Alu -3 307 2 2147 108 0 10 chr3 58336903 58337244 -169187334 - AluSq SINE Alu 0 338 1 245 386 53 0 chr3 58337453 58337567 -169187011 + L2 LINE L2 3123 3242 -30 196 286 39 13 chr3 58337622 58337699 -169186879 - MIR SINE MIR -83 179 101 2429 95 0 7 chr3 58337996 58338301 -169186277 - AluSx SINE Alu -9 303 1 646 249 36 6 chr3 58338339 58338504 -169186074 - MER5A DNA MER1_type -13 176 7 21 0 0 0 chr3 58338920 58338941 -169185637 + AT_rich Low_complexity Low_complexity 1 21 0 2164 105 14 0 chr3 58339199 58339484 -169185094 + AluSx SINE Alu 10 298 -14 720 120 73 12 chr3 58339582 58339713 -169184865 + L1PA10 LINE L1 6019 6149 -16 28 0 0 0 chr3 58339743 58339771 -169184807 + AT_rich Low_complexity Low_complexity 1 28 0 275 328 35 9 chr3 58340962 58341078 -169183500 + MIR3 SINE MIR 81 199 -9 223 338 25 56 chr3 58341350 58341510 -169183068 - MIR SINE MIR -60 202 48 27 0 0 0 chr3 58341587 58341614 -169182964 + AT_rich Low_complexity Low_complexity 1 27 0 486 255 7 59 chr3 58341897 58341996 -169182582 + MER103 DNA DNA 6 96 -70 886 159 0 0 chr3 58341996 58342128 -169182450 + FLAM_A SINE Alu 1 132 -1 486 255 7 59 chr3 58342128 58342181 -169182397 + MER103 DNA DNA 96 150 -16 797 165 8 0 chr3 58342878 58343005 -169181573 + FLAM_C SINE Alu 2 129 -4 1864 134 34 17 chr3 58344173 58344465 -169180113 - AluJo SINE Alu -15 297 1 525 40 0 27 chr3 58345495 58345569 -169179009 + L1PA5 LINE L1 6082 6153 -1 197 233 87 78 chr3 58345846 58345949 -169178629 + L2 LINE L2 3201 3304 -9 1918 176 0 0 chr3 58346029 58346341 -169178237 + AluJb SINE Alu 1 312 0 2103 130 10 0 chr3 58354658 58354951 -169169627 + AluSx SINE Alu 1 296 -16 1776 180 0 37 chr3 58355647 58355969 -169168609 + AluJo SINE Alu 1 310 -2 656 230 54 18 chr3 58356152 58356374 -169168204 + L1MC5 LINE L1 7688 7917 -44 9389 47 1 0 chr3 58356467 58358424 -169166154 - L1PA5 LINE L1 -7 6147 4188 563 292 171 4 chr3 58358722 58358979 -169165599 - L2 LINE L2 -6 3307 3008 272 343 39 44 chr3 58359310 58359514 -169165064 - L2 LINE L2 -25 3288 3086 2521 72 3 3 chr3 58361971 58362276 -169162302 - AluSp SINE Alu -8 305 1 2138 137 0 3 chr3 58363651 58363950 -169160628 + AluSx SINE Alu 3 300 -12 184 304 0 0 chr3 58365061 58365117 -169159461 + L2 LINE L2 3204 3259 -13 181 281 16 47 chr3 58367047 58367111 -169157467 - MIR SINE MIR -198 64 3 369 233 30 45 chr3 58368784 58368917 -169155661 + CT-rich Low_complexity Low_complexity 6 136 0 311 335 24 18 chr3 58371162 58371329 -169153249 - L2 LINE L2 -234 3038 2871 29249 49 2 2 chr3 58373808 58378434 -169146144 - L1PA5 LINE L1 -1 6153 1527 9347 116 37 8 chr3 58378435 58379889 -169144689 + L1PA5 LINE L1 22 1518 -4628 907 278 146 24 chr3 58381027 58381487 -169143091 - MLT1H1 LTR MaLR -6 549 34 22 0 0 0 chr3 58395527 58395549 -169129029 + GC_rich Low_complexity Low_complexity 1 22 0 345 24 0 0 chr3 58395630 58395672 -169128906 + (GGA)n Simple_repeat Simple_repeat 1 42 0 240 35 0 0 chr3 58395846 58395875 -169128703 + (CGGGGG)n Simple_repeat Simple_repeat 4 32 0 213 255 0 0 chr3 58396844 58396863 -169127715 - L2 LINE L2 -1 3312 3262 224 125 0 0 chr3 58396863 58396895 -169127683 - MIR SINE MIR -14 248 217 259 244 67 25 chr3 58397022 58397141 -169127437 - L2 LINE L2 -293 2979 2856 1472 194 21 31 chr3 58397360 58397492 -169127086 + AluJb SINE Alu 1 133 -179 2303 99 0 23 chr3 58397492 58397796 -169126782 + AluSx SINE Alu 1 297 -15 1472 194 21 31 chr3 58397796 58397952 -169126626 + AluJb SINE Alu 133 286 -26 258 267 50 10 chr3 58398351 58398452 -169126126 - L2 LINE L2 -254 3059 2955 318 278 87 0 chr3 58398483 58398598 -169125980 - L2 LINE L2 -508 2806 2682 265 222 28 37 chr3 58401573 58401681 -169122897 + (CCG)n Simple_repeat Simple_repeat 1 107 0 22 0 0 0 chr3 58401692 58401714 -169122864 + GC_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 58401812 58401835 -169122743 + GC_rich Low_complexity Low_complexity 1 23 0 224 264 35 0 chr3 58402519 58402606 -169121972 + (CCG)n Simple_repeat Simple_repeat 1 90 0 21 36 0 0 chr3 58408181 58408209 -169116369 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr3 58408498 58408534 -169116044 + AT_rich Low_complexity Low_complexity 1 36 0 201 255 0 0 chr3 58410942 58410989 -169113589 + CT-rich Low_complexity Low_complexity 1 47 0 2372 70 3 0 chr3 58411172 58411474 -169113104 + AluY SINE Alu 1 303 -8 1015 172 91 24 chr3 58412728 58412887 -169111691 + MER58A DNA MER1_type 1 179 -2241 2392 68 7 3 chr3 58412887 58413196 -169111382 - AluSx SINE Alu -2 310 1 1015 172 91 24 chr3 58413196 58413245 -169111333 + MER58A DNA MER1_type 179 223 -1 207 191 0 0 chr3 58413662 58413721 -169110857 + (CAT)n Simple_repeat Simple_repeat 1 59 0 979 182 0 21 chr3 58416196 58416383 -169108195 + AluJo SINE Alu 122 304 -8 2389 79 0 0 chr3 58416385 58416689 -169107889 + AluY SINE Alu 1 304 -7 1591 97 9 0 chr3 58417235 58417452 -169107126 + AluSx SINE Alu 1 219 -93 316 40 0 40 chr3 58417452 58417502 -169107076 + AluSx SINE Alu 253 300 0 2168 91 13 13 chr3 58418028 58418336 -169106242 + AluSx SINE Alu 1 308 -4 253 143 0 41 chr3 58418561 58418610 -169105968 + L1MB7 LINE L1 6128 6174 -10 2263 104 0 9 chr3 58421222 58421538 -169103040 + AluSq SINE Alu 1 313 0 2058 114 0 10 chr3 58422178 58422486 -169102092 + AluSq SINE Alu 5 309 -4 431 315 67 55 chr3 58422490 58422631 -169101947 - MIR SINE MIR 0 262 115 1816 163 0 10 chr3 58422631 58422938 -169101640 + AluSx SINE Alu 1 304 -8 431 315 67 55 chr3 58422938 58423050 -169101528 - MIR SINE MIR -147 115 6 217 260 110 0 chr3 58423074 58423147 -169101431 - MIR SINE MIR -6 256 176 2227 97 0 0 chr3 58423766 58424066 -169100512 + AluSg SINE Alu 1 300 -10 2570 33 10 0 chr3 58424066 58424368 -169100210 + L1PA5 LINE L1 5842 6146 -8 22 56 0 0 chr3 58424368 58424404 -169100174 + AT_rich Low_complexity Low_complexity 1 36 0 2070 126 0 0 chr3 58424885 58425186 -169099392 - AluSx SINE Alu -11 301 1 2320 84 3 0 chr3 58425936 58426244 -169098334 - AluSp SINE Alu -4 309 1 22 0 0 0 chr3 58426880 58426902 -169097676 + AT_rich Low_complexity Low_complexity 1 22 0 246 261 149 8 chr3 58426969 58427103 -169097475 - MER103 DNA DNA -1 165 13 2031 101 0 4 chr3 58427120 58427396 -169097182 - AluSx SINE Alu -37 275 1 240 35 0 0 chr3 58427411 58427440 -169097138 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 2296 61 0 0 chr3 58427440 58427719 -169096859 - AluY SINE Alu -32 279 1 22 70 0 0 chr3 58427726 58427769 -169096809 + AT_rich Low_complexity Low_complexity 1 43 0 31 44 0 0 chr3 58427852 58427897 -169096681 + AT_rich Low_complexity Low_complexity 1 45 0 228 270 90 0 chr3 58428043 58428143 -169096435 - L1ME3A LINE L1 -230 5940 5832 615 238 130 27 chr3 58428169 58428354 -169096224 - MIR SINE MIR -58 204 1 741 280 111 21 chr3 58428415 58428694 -169095884 - L1ME3A LINE L1 -514 5648 5345 2064 112 3 22 chr3 58428731 58429044 -169095534 - AluSx SINE Alu -5 307 1 1741 138 0 62 chr3 58429075 58429400 -169095178 + AluJo SINE Alu 1 305 -7 1949 108 7 7 chr3 58429422 58429746 -169094832 + AluSq SINE Alu 1 324 0 1953 128 0 10 chr3 58429869 58430180 -169094398 + AluSx SINE Alu 1 308 0 2077 118 3 0 chr3 58430410 58430707 -169093871 + AluSx SINE Alu 1 298 -14 375 237 94 75 chr3 58430740 58431147 -169093431 - L1MEc LINE L1 -4840 1470 941 650 220 0 8 chr3 58431147 58431265 -169093313 - FLAM_A SINE Alu -16 117 1 375 237 94 75 chr3 58431265 58431380 -169093198 - L1MEc LINE L1 -5369 941 830 * 549 172 8 41 chr3 58431365 58431487 -169093091 - L1MB4 LINE L1 -42 6138 6021 4246 196 78 121 chr3 58431515 58431943 -169092635 + L1 LINE L1 2581 3026 -3120 2088 123 3 0 chr3 58431943 58432251 -169092327 - AluSq SINE Alu -4 309 1 4246 196 78 121 chr3 58432251 58432808 -169091770 + L1 LINE L1 3026 3605 -2541 640 224 8 0 chr3 58432808 58432933 -169091645 + FLAM_C SINE Alu 1 126 -17 4246 196 78 121 chr3 58432933 58433402 -169091176 + L1 LINE L1 3605 4070 -2076 836 153 0 0 chr3 58433402 58433526 -169091052 - FLAM_C SINE Alu -9 124 1 4246 196 78 121 chr3 58433526 58433812 -169090766 + L1 LINE L1 4070 4367 -1779 1202 179 13 0 chr3 58433821 58434045 -169090533 - AluJo SINE Alu 0 312 86 39 31 0 16 chr3 58434050 58434078 -169090500 + AT_rich Low_complexity Low_complexity 1 28 -35 756 168 0 8 chr3 58434078 58434197 -169090381 + FLAM_C SINE Alu 1 118 -15 39 31 0 16 chr3 58434197 58434232 -169090346 + AT_rich Low_complexity Low_complexity 28 63 0 1962 109 0 4 chr3 58434246 58434522 -169090056 + AluSq SINE Alu 24 298 -15 344 231 156 27 chr3 58434590 58434776 -169089802 - MER112 DNA MER1_type -48 212 3 920 170 6 0 chr3 58434795 58434954 -169089624 - AluJb SINE Alu -13 299 140 28 48 0 0 chr3 58435086 58435128 -169089450 + AT_rich Low_complexity Low_complexity 1 42 0 2175 103 0 13 chr3 58435474 58435776 -169088802 + AluSx SINE Alu 1 298 -14 1436 136 4 21 chr3 58436090 58436325 -169088253 + AluJo SINE Alu 1 231 -81 2238 84 3 0 chr3 58436415 58436712 -169087866 + AluSx SINE Alu 1 298 -14 1331 208 35 28 chr3 58436802 58437091 -169087487 - AluJo SINE Alu -9 293 3 1714 166 0 3 chr3 58437123 58437412 -169087166 - AluSx SINE Alu -24 288 1 2392 64 0 0 chr3 58437417 58437714 -169086864 - AluY SINE Alu -6 305 9 1735 157 3 14 chr3 58438074 58438367 -169086211 + AluJo SINE Alu 1 290 -22 2221 97 0 3 chr3 58438367 58438666 -169085912 + AluSg SINE Alu 1 298 -12 45311 35 2 2 chr3 58438671 58444824 -169079754 + L1PA4 LINE L1 1 6152 -3 1940 140 13 0 chr3 58444892 58445199 -169079379 + AluSx SINE Alu 1 311 -1 2175 116 0 0 chr3 58445215 58445518 -169079060 + AluSx SINE Alu 1 303 -9 23 24 0 24 chr3 58445547 58445570 -169079008 + AT_rich Low_complexity Low_complexity 1 24 -16 535 189 61 61 chr3 58445570 58445702 -169078876 + FLAM_C SINE Alu 1 132 -1 23 24 0 24 chr3 58445702 58445719 -169078859 + AT_rich Low_complexity Low_complexity 24 40 0 1562 171 14 0 chr3 58446261 58446573 -169078005 + AluJb SINE Alu 10 312 0 1807 165 0 0 chr3 58446615 58446906 -169077672 - AluJb SINE Alu -21 291 1 36 40 0 0 chr3 58446992 58447042 -169077536 + AT_rich Low_complexity Low_complexity 1 50 0 399 326 133 57 chr3 58447045 58447164 -169077414 - L2 LINE L2 -5 3267 3158 1459 174 60 4 chr3 58447164 58447445 -169077133 + AluJb SINE Alu 1 297 -15 399 326 133 57 chr3 58447445 58448201 -169076377 - L2 LINE L2 -114 3158 2211 2217 96 0 3 chr3 58448213 58448515 -169076063 + AluSq SINE Alu 1 301 -12 1893 114 59 0 chr3 58448593 58448882 -169075696 + L1PA11 LINE L1 5858 6163 -11 2111 107 0 3 chr3 58449107 58449398 -169075180 + AluSg SINE Alu 2 291 -19 1319 195 56 11 chr3 58449407 58449694 -169074884 + AluJb SINE Alu 1 300 -2 297 310 248 14 chr3 58449775 58450130 -169074448 - L2 LINE L2 -339 2975 2538 2251 96 6 16 chr3 58450296 58450610 -169073968 + AluSq SINE Alu 3 313 0 836 157 15 15 chr3 58450617 58450751 -169073827 + AluJb SINE Alu 1 134 -178 905 161 0 15 chr3 58450864 58451001 -169073577 + AluJb SINE Alu 3 137 -175 546 156 0 0 chr3 58451028 58451118 -169073460 - AluY SINE Alu -3 308 219 900 161 0 7 chr3 58451118 58451261 -169073317 + AluJb SINE Alu 157 298 -14 1111 91 0 0 chr3 58451261 58451393 -169073185 + AluSp SINE Alu 1 132 -181 2024 84 11 11 chr3 58451396 58451669 -169072909 + AluSq SINE Alu 1 273 -40 302 242 225 66 chr3 58451786 58451968 -169072610 - MIR SINE MIR -2 260 50 * 367 266 85 11 chr3 58451956 58452050 -169072528 + MIR SINE MIR 50 150 -112 325 273 98 7 chr3 58452115 58452258 -169072320 + L1MC4 LINE L1 7798 7953 -89 1917 160 7 0 chr3 58452265 58452558 -169072020 + AluSx SINE Alu 2 296 -16 2472 65 3 0 chr3 58452562 58452856 -169071722 + AluSg SINE Alu 4 298 -12 1218 182 54 88 chr3 58452871 58453096 -169071482 + AluJo SINE Alu 4 235 -67 1957 68 0 0 chr3 58453096 58453331 -169071247 + AluY SINE Alu 77 311 0 2346 105 0 0 chr3 58453337 58453641 -169070937 + AluSg SINE Alu 7 310 0 1218 182 54 88 chr3 58453641 58453705 -169070873 + AluJo SINE Alu 240 290 -12 705 168 67 8 chr3 58453708 58453827 -169070751 + FLAM_C SINE Alu 2 127 -16 23 0 0 0 chr3 58453831 58453854 -169070724 + AT_rich Low_complexity Low_complexity 1 23 0 324 0 0 0 chr3 58455368 58455404 -169069174 + (A)n Simple_repeat Simple_repeat 1 36 0 1367 137 28 68 chr3 58455782 58456031 -169068547 - AluSg/x SINE Alu -2 310 72 2046 155 0 16 chr3 58456051 58456368 -169068210 - AluJo SINE Alu 0 312 1 474 261 124 7 chr3 58456452 58456605 -169067973 - MIR3 SINE MIR -1 207 37 265 293 41 49 chr3 58457102 58457225 -169067353 - MIR SINE MIR -34 228 107 1699 138 23 79 chr3 58457513 58457817 -169066761 + AluJb SINE Alu 5 291 -21 24 0 0 0 chr3 58457817 58457841 -169066737 + AT_rich Low_complexity Low_complexity 1 24 0 2483 67 3 0 chr3 58459288 58459586 -169064992 - AluY SINE Alu -11 300 2 1898 108 8 0 chr3 58459597 58459855 -169064723 - AluSx SINE Alu -9 303 44 873 174 0 0 chr3 58459990 58460122 -169064456 - FLAM_C SINE Alu -11 132 1 24 0 0 0 chr3 58460280 58460304 -169064274 + AT_rich Low_complexity Low_complexity 1 24 0 2103 113 0 3 chr3 58460304 58460660 -169063918 + AluSx SINE Alu 1 355 0 2480 68 0 3 chr3 58460671 58460966 -169063612 + AluY SINE Alu 1 294 -17 198 202 181 64 chr3 58461383 58461477 -169063101 - MIR SINE MIR -63 199 95 212 143 0 0 chr3 58461805 58461840 -169062738 + (CCCCCG)n Simple_repeat Simple_repeat 6 40 0 1997 126 37 0 chr3 58463778 58464072 -169060506 + AluSx SINE Alu 1 305 -7 200 193 140 53 chr3 58464094 58464151 -169060427 - L2 LINE L2 0 3313 3252 241 268 39 94 chr3 58465122 58465249 -169059329 + MIR SINE MIR 73 192 -70 2414 60 0 57 chr3 58465454 58465772 -169058806 - AluY SINE Alu -11 300 1 2489 87 3 0 chr3 58466336 58466647 -169057931 + AluSp SINE Alu 1 312 -1 229 321 64 57 chr3 58466821 58466961 -169057617 + L2 LINE L2 2944 3084 -188 32 0 0 0 chr3 58467017 58467049 -169057529 + AT_rich Low_complexity Low_complexity 1 32 0 336 289 116 8 chr3 58467088 58467209 -169057369 + L2 LINE L2 3139 3272 0 1946 131 21 11 chr3 58467628 58467910 -169056668 - AluSx SINE Alu -27 285 1 2268 114 0 0 chr3 58468193 58468499 -169056079 - AluSg SINE Alu -4 306 1 1170 173 0 36 chr3 58468571 58468796 -169055782 - AluJo SINE Alu -1 311 95 365 200 29 0 chr3 58469026 58469096 -169055482 + MIR SINE MIR 80 151 -111 1881 162 17 3 chr3 58469155 58469445 -169055133 + AluJo SINE Alu 1 294 -18 2182 119 0 3 chr3 58469763 58470056 -169054522 - AluSx SINE Alu -18 294 3 235 275 12 12 chr3 58471034 58471114 -169053464 - L2 LINE L2 -274 2998 2919 1805 173 17 0 chr3 58471315 58471604 -169052974 + AluJb SINE Alu 1 294 -18 2189 109 3 7 chr3 58471627 58471785 -169052793 - AluSq SINE Alu -20 293 135 2417 80 0 10 chr3 58471785 58472096 -169052482 - AluY SINE Alu -3 308 1 2189 109 3 7 chr3 58472096 58472231 -169052347 - AluSq SINE Alu -178 135 1 2078 153 0 0 chr3 58472545 58472852 -169051726 + AluSx SINE Alu 1 307 -5 1479 181 0 23 chr3 58473085 58473345 -169051233 + AluJo SINE Alu 1 254 -58 2416 78 0 0 chr3 58473345 58473640 -169050938 + AluY SINE Alu 1 295 -16 436 238 287 11 chr3 58473643 58473824 -169050754 + MIR SINE MIR 28 258 -4 1747 138 72 0 chr3 58473893 58474183 -169050395 + AluSx SINE Alu 1 311 -1 207 0 0 0 chr3 58474338 58474361 -169050217 + (A)n Simple_repeat Simple_repeat 1 23 0 2331 70 14 3 chr3 58474361 58474647 -169049931 + AluY SINE Alu 1 289 -22 1521 101 18 18 chr3 58474647 58474865 -169049713 + AluSg/x SINE Alu 82 300 -12 1003 161 39 50 chr3 58475190 58475370 -169049208 + AluJo SINE Alu 83 260 -52 204 346 37 12 chr3 58475378 58475459 -169049119 + MIR SINE MIR 19 101 -107 2022 144 13 3 chr3 58475771 58476070 -169048508 - AluJb SINE Alu -10 302 1 779 191 0 22 chr3 58476418 58476554 -169048024 - FLAM_C SINE Alu 0 133 1 22 0 0 0 chr3 58476888 58476910 -169047668 + AT_rich Low_complexity Low_complexity 1 22 0 1780 170 0 7 chr3 58476984 58477267 -169047311 + AluJb SINE Alu 1 281 -31 2195 93 0 28 chr3 58477272 58477588 -169046990 + AluY SINE Alu 1 308 0 508 182 0 13 chr3 58477673 58477891 -169046687 + AluJb SINE Alu 11 304 -8 236 366 60 8 chr3 58477934 58478068 -169046510 - L2 LINE L2 -216 3056 2916 2385 82 0 13 chr3 58478080 58478385 -169046193 + AluSg SINE Alu 1 301 -9 214 282 49 70 chr3 58478610 58478752 -169045826 + L2 LINE L2 3171 3309 -4 241 366 41 36 chr3 58478939 58479160 -169045418 - L2 LINE L2 -497 2817 2596 2015 128 27 10 chr3 58479175 58479472 -169045106 + AluSx SINE Alu 1 302 -10 2139 115 3 13 chr3 58479475 58479779 -169044799 + AluSx SINE Alu 2 302 -10 201 323 0 0 chr3 58479869 58479931 -169044647 - L2 LINE L2 -945 2369 2308 1738 159 25 0 chr3 58479935 58480212 -169044366 + AluJo SINE Alu 7 290 -22 2464 82 0 0 chr3 58480248 58480551 -169044027 + AluSx SINE Alu 1 303 -9 46 15 0 29 chr3 58480583 58480621 -169043957 + AT_rich Low_complexity Low_complexity 1 39 -27 2362 97 0 7 chr3 58480621 58480920 -169043658 + AluSq SINE Alu 2 298 -15 2226 94 3 13 chr3 58480920 58481217 -169043361 + AluSq SINE Alu 1 295 -18 46 15 0 29 chr3 58481217 58481245 -169043333 + AT_rich Low_complexity Low_complexity 37 66 0 339 25 0 0 chr3 58481375 58481415 -169043163 + (TG)n Simple_repeat Simple_repeat 1 40 0 203 330 0 18 chr3 58481608 58481717 -169042861 + A-rich Low_complexity Low_complexity 4 110 0 1082 114 0 0 chr3 58482082 58482255 -169042323 + AluSg/x SINE Alu 145 317 0 2223 89 0 40 chr3 58483059 58483385 -169041193 - AluSq SINE Alu 0 313 1 2223 132 54 39 chr3 58483737 58483917 -169040661 + MSTA LTR MaLR 11 187 -241 2187 121 14 0 chr3 58483917 58484206 -169040372 + AluSx SINE Alu 1 293 -19 2223 132 54 39 chr3 58484206 58484435 -169040143 + MSTA LTR MaLR 187 426 -2 754 218 0 0 chr3 58484576 58484709 -169039869 + FLAM_A SINE Alu 1 133 0 321 26 0 0 chr3 58484938 58484976 -169039602 + (CA)n Simple_repeat Simple_repeat 2 39 0 866 95 0 0 chr3 58485475 58485591 -169038987 - AluSg/x SINE Alu -7 302 187 258 188 10 178 chr3 58485894 58485937 -169038641 - L2 LINE L2 -7 3265 3246 2377 67 3 0 chr3 58485937 58486250 -169038328 + AluY SINE Alu 1 314 0 258 188 10 178 chr3 58486250 58486306 -169038272 - L2 LINE L2 -26 3246 3182 * 284 271 0 35 chr3 58486294 58486452 -169038126 - MIR SINE MIR -31 231 15 564 278 121 35 chr3 58486545 58486883 -169037695 - L2 LINE L2 -1 3312 2946 2712 71 28 97 chr3 58486939 58487363 -169037215 + MER48 LTR ERV1 1 395 -3 9875 103 9 26 chr3 58487394 58488403 -169036175 + HERVH48 LTR ERV1 4333 5309 -1345 2396 91 0 10 chr3 58488403 58488712 -169035866 - AluSc SINE Alu -3 306 1 9875 103 9 26 chr3 58488712 58489219 -169035359 + HERVH48 LTR ERV1 5309 5823 -831 2271 112 0 3 chr3 58489390 58489693 -169034885 - AluSg SINE Alu -8 302 1 631 257 139 19 chr3 58490752 58491159 -169033419 + L2 LINE L2 2717 3227 -86 1790 205 0 3 chr3 58491762 58492065 -169032513 + AluJb SINE Alu 1 302 -10 2432 94 0 0 chr3 58492065 58492374 -169032204 + AluY SINE Alu 1 309 -2 434 169 11 0 chr3 58492374 58492463 -169032115 + GA-rich Low_complexity Low_complexity 1 90 0 2161 129 7 0 chr3 58493705 58494000 -169030578 + AluSx SINE Alu 1 297 -15 2297 114 0 0 chr3 58495876 58496183 -169028395 - AluSx SINE Alu -5 307 1 180 135 0 0 chr3 58497107 58497144 -169027434 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 1973 154 3 22 chr3 58497405 58497723 -169026855 + AluJb SINE Alu 1 312 0 411 266 85 82 chr3 58497732 58497835 -169026743 + L1ME4a LINE L1 5568 5669 -452 1969 135 9 35 chr3 58497835 58498153 -169026425 + AluSx SINE Alu 1 310 -2 2136 137 0 6 chr3 58498159 58498472 -169026106 + AluSx SINE Alu 1 311 -1 411 266 85 82 chr3 58498472 58498692 -169025886 + L1ME4a LINE L1 5673 5899 -222 2035 105 0 11 chr3 58498782 58499049 -169025529 + AluSg SINE Alu 40 303 -7 319 329 42 7 chr3 58499049 58499192 -169025386 + L1ME2 LINE L1 5510 5657 -513 311 243 272 35 chr3 58499200 58499369 -169025209 + L1ME2 LINE L1 5691 5899 -265 21 0 0 0 chr3 58499379 58499400 -169025178 + AT_rich Low_complexity Low_complexity 1 21 0 1959 128 7 3 chr3 58500293 58500599 -169023979 - AluSc SINE Alu -1 308 2 1556 175 23 13 chr3 58500602 58500905 -169023673 - AluJb SINE Alu -6 306 1 2208 110 0 0 chr3 58501044 58501343 -169023235 - AluSg SINE Alu -11 299 1 2179 112 0 13 chr3 58501369 58501681 -169022897 - AluSc SINE Alu -1 308 1 1619 180 50 25 chr3 58501682 58502044 -169022534 - L1MD3 LINE L1 -5 7990 7620 248 143 71 0 chr3 58502062 58502118 -169022460 + CT-rich Low_complexity Low_complexity 1 60 0 854 149 0 22 chr3 58502118 58502252 -169022326 - FLAM_C SINE Alu -2 131 1 2029 113 0 0 chr3 58502260 58502576 -169022002 - AluSx SINE Alu 0 316 1 1109 199 17 0 chr3 58502576 58502807 -169021771 + L1M4 LINE L1 3550 3784 -2362 2225 88 3 13 chr3 58502808 58502941 -169021637 + AluSg SINE Alu 1 134 -176 1978 98 31 3 chr3 58502941 58503227 -169021351 + AluSx SINE Alu 1 294 -18 2225 88 3 13 chr3 58503227 58503400 -169021178 + AluSg SINE Alu 134 304 -6 1666 156 24 0 chr3 58503409 58503698 -169020880 + AluSx SINE Alu 1 296 -16 1966 109 4 0 chr3 58503932 58504198 -169020380 + AluSp SINE Alu 7 273 -40 252 270 11 79 chr3 58504507 58504596 -169019982 + L2 LINE L2 3231 3313 0 228 135 0 0 chr3 58504916 58504953 -169019625 + (T)n Simple_repeat Simple_repeat 1 37 0 1723 157 7 7 chr3 58504998 58505304 -169019274 - AluJb SINE Alu -6 306 1 1871 141 3 16 chr3 58505544 58505857 -169018721 - AluSx SINE Alu 0 312 4 295 328 70 62 chr3 58506980 58507108 -169017470 - L2 LINE L2 -16 3256 3128 1428 119 0 0 chr3 58507114 58507324 -169017254 - AluSq SINE Alu -13 300 91 508 105 53 0 chr3 58508315 58508391 -169016187 + MADE1 DNA Mariner 1 80 0 325 91 0 0 chr3 58508555 58508599 -169015979 + Alu SINE Alu 250 293 -9 859 132 0 8 chr3 58508599 58508728 -169015850 - AluJo/FLAM SINE Alu -170 132 5 341 253 101 0 chr3 58508811 58508910 -169015668 + MIR SINE MIR 151 259 -3 436 261 111 26 chr3 58509144 58509297 -169015281 - MIR SINE MIR -19 243 78 1835 152 3 7 chr3 58509522 58509824 -169014754 + AluSx SINE Alu 1 301 -11 2935 199 21 95 chr3 58509826 58509877 -169014701 + L1M4 LINE L1 4115 4168 -1978 1960 129 3 0 chr3 58509877 58510171 -169014407 + AluSg SINE Alu 1 295 -15 225 94 0 0 chr3 58510171 58510203 -169014375 + (TG)n Simple_repeat Simple_repeat 2 33 0 234 0 0 0 chr3 58510205 58510231 -169014347 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 2935 199 21 95 chr3 58510231 58510503 -169014075 + L1M4 LINE L1 4168 4458 -1688 1471 169 0 51 chr3 58510503 58510816 -169013762 + AluJb SINE Alu 1 297 -15 2935 199 21 95 chr3 58510816 58511015 -169013563 + L1M4 LINE L1 4458 4670 -1476 1947 134 0 10 chr3 58511015 58511322 -169013256 + AluSx SINE Alu 3 306 -6 2935 199 21 95 chr3 58511322 58511438 -169013140 + L1M4 LINE L1 4670 4793 -1353 2054 122 0 0 chr3 58511438 58511734 -169012844 + AluSc SINE Alu 1 296 -13 2935 199 21 95 chr3 58511734 58511939 -169012639 + L1M4 LINE L1 4793 5011 -1135 1979 104 17 3 chr3 58511939 58512236 -169012342 + AluSx SINE Alu 3 303 -9 2935 199 21 95 chr3 58512236 58512251 -169012327 + L1M4 LINE L1 5011 4910 -1236 1957 96 7 14 chr3 58512251 58512542 -169012036 + AluSc SINE Alu 6 294 -15 2935 199 21 95 chr3 58512542 58512614 -169011964 + L1M4 LINE L1 4909 4985 -1161 1134 162 29 123 chr3 58512602 58512615 -169011963 + L1M4 LINE L1 5360 5373 -801 * 1649 154 45 7 chr3 58512615 58512901 -169011677 + AluSq SINE Alu 1 297 -16 1134 162 29 123 chr3 58512901 58513085 -169011493 + L1M4 LINE L1 5373 5514 -660 2302 85 0 0 chr3 58513085 58513392 -169011186 + AluY SINE Alu 3 309 -2 1134 162 29 123 chr3 58513392 58513533 -169011045 + L1M4 LINE L1 5514 5667 -507 2232 105 3 0 chr3 58513534 58513838 -169010740 + AluSq SINE Alu 1 305 -8 1683 110 0 0 chr3 58513839 58514075 -169010503 + AluSg/x SINE Alu 72 307 -3 506 179 0 0 chr3 58514086 58514170 -169010408 + Tigger2 DNA MER2_type 277 360 -2358 1243 207 26 15 chr3 58514170 58514440 -169010138 + AluJo SINE Alu 1 273 -39 287 25 25 0 chr3 58514451 58514491 -169010087 + (TAAA)n Simple_repeat Simple_repeat 1 41 0 1872 124 76 0 chr3 58514491 58514782 -169009796 + Tigger2 DNA MER2_type 354 666 -2052 2153 106 0 17 chr3 58514893 58515195 -169009383 - AluSx SINE Alu -15 297 1 2206 103 3 0 chr3 58515282 58515583 -169008995 - AluSp SINE Alu -11 302 1 2097 104 13 7 chr3 58515703 58516011 -169008567 + AluSq SINE Alu 1 310 -3 392 76 0 20 chr3 58518868 58518915 -169005663 - Alu SINE Alu -256 47 17 1661 140 0 84 chr3 58518915 58519236 -169005342 - AluJb SINE Alu -18 294 1 392 76 0 20 chr3 58519236 58519253 -169005325 - Alu SINE Alu -286 17 1 2142 113 0 7 chr3 58519367 58519669 -169004909 - AluSx SINE Alu -12 300 1 1097 164 63 0 chr3 58519715 58519922 -169004656 - AluJb SINE Alu -7 305 86 226 289 168 27 chr3 58520302 58520451 -169004127 + MIR SINE MIR 34 203 -59 1624 179 3 17 chr3 58521891 58522193 -169002385 - AluJb SINE Alu -13 299 2 1260 157 42 5 chr3 58522358 58522575 -169002003 + AluJo SINE Alu 79 303 -9 670 214 76 0 chr3 58522575 58522720 -169001858 + AluJo/FRAM SINE Alu 140 295 -7 26 0 0 0 chr3 58522913 58522939 -169001639 + AT_rich Low_complexity Low_complexity 1 26 0 1644 152 0 98 chr3 58522943 58523278 -169001300 + AluJb SINE Alu 1 302 0 196 175 0 25 chr3 58523600 58523640 -169000938 + L2 LINE L2 3271 3309 -4 4268 168 40 39 chr3 58524136 58524282 -169000296 + L1MB3 LINE L1 5140 5284 -899 1326 190 19 50 chr3 58524282 58524603 -168999975 + AluJo SINE Alu 1 311 -1 4268 168 40 39 chr3 58524603 58525455 -168999123 + L1MB3 LINE L1 5284 6142 -41 2072 124 0 3 chr3 58525455 58525762 -168998816 + AluSg SINE Alu 1 306 -4 1970 135 7 0 chr3 58525777 58526081 -168998497 + AluSx SINE Alu 5 310 -2 2156 96 3 0 chr3 58526145 58526437 -168998141 + AluSp SINE Alu 1 293 -20 321 151 82 55 chr3 58526444 58526517 -168998061 + L1M4 LINE L1 5127 5201 -945 1131 191 69 13 chr3 58526537 58526612 -168997966 + AluJo SINE Alu 46 115 -197 2398 74 3 0 chr3 58526612 58526921 -168997657 + AluY SINE Alu 1 310 -1 1131 191 69 13 chr3 58526921 58527076 -168997502 + AluJo SINE Alu 115 289 -23 27 0 0 0 chr3 58527076 58527103 -168997475 + AT_rich Low_complexity Low_complexity 1 27 0 753 146 30 85 chr3 58527114 58527172 -168997406 + L1MB5 LINE L1 6019 6079 -95 2065 97 17 0 chr3 58527172 58527462 -168997116 + AluSx SINE Alu 6 300 -12 1906 129 0 26 chr3 58527462 58527763 -168996815 + AluSg SINE Alu 1 294 -16 753 146 30 85 chr3 58527763 58527868 -168996710 + L1MB5 LINE L1 6077 6174 0 294 295 51 0 chr3 58527870 58527948 -168996630 - MIR SINE MIR -133 129 48 369 208 0 20 chr3 58528050 58528151 -168996427 + CT-rich Low_complexity Low_complexity 1 99 0 2069 122 0 3 chr3 58528828 58529132 -168995446 + AluSq SINE Alu 1 303 -10 844 129 0 0 chr3 58529133 58529257 -168995321 + Tigger2 DNA MER2_type 2536 2659 -59 1796 163 10 0 chr3 58529257 58529552 -168995026 + AluJb SINE Alu 1 298 -14 2172 88 6 25 chr3 58529589 58529906 -168994672 + AluSp SINE Alu 2 312 -1 1009 160 61 56 chr3 58530228 58530441 -168994137 + AluJo SINE Alu 92 305 -7 240 321 66 9 chr3 58530561 58530667 -168993911 + MIR3 SINE MIR 78 189 -19 388 215 115 69 chr3 58530748 58530787 -168993791 - MIR SINE MIR -79 183 147 2154 102 3 3 chr3 58530787 58531082 -168993496 - AluSx SINE Alu -17 295 1 388 215 115 69 chr3 58531082 58531172 -168993406 - MIR SINE MIR -115 147 48 1359 115 0 0 chr3 58531397 58531589 -168992989 - AluSq SINE Alu -10 303 112 1279 86 0 0 chr3 58531595 58531757 -168992821 - AluSq SINE Alu -151 162 1 644 235 54 6 chr3 58531796 58531962 -168992616 - MER5B DNA MER1_type 0 178 5 1994 106 10 10 chr3 58532819 58533111 -168991467 - AluSg SINE Alu -18 292 1 318 95 0 0 chr3 58533298 58533340 -168991238 + Alu SINE Alu 1 42 -266 1881 148 0 3 chr3 58534131 58534435 -168990143 - AluJb SINE Alu -9 303 1 1519 167 213 14 chr3 58534499 58534787 -168989791 + Charlie1b DNA MER1_type 1 230 -2531 1976 139 0 0 chr3 58534787 58535081 -168989497 - AluSx SINE Alu -18 294 1 1519 167 213 14 chr3 58535081 58535224 -168989354 + Charlie1b DNA MER1_type 230 518 -5 452 65 0 0 chr3 58535663 58535725 -168988853 + Alu SINE Alu 241 302 -9 1413 187 43 7 chr3 58536046 58536324 -168988254 + AluJo SINE Alu 5 292 -20 2144 100 0 10 chr3 58536338 58536637 -168987941 + AluSx SINE Alu 3 298 -14 939 159 16 6 chr3 58538128 58538310 -168986268 + AluSx SINE Alu 1 184 -128 403 174 0 65 chr3 58538428 58538520 -168986058 - AluS SINE Alu -226 87 2 2199 175 91 99 chr3 58538520 58538629 -168985949 + L1 LINE L1 4211 4319 -1827 2071 111 3 3 chr3 58538629 58538927 -168985651 + AluSq SINE Alu 1 298 -15 2199 175 91 99 chr3 58538927 58538950 -168985628 + L1 LINE L1 4319 4341 -1805 524 206 29 52 chr3 58538950 58539086 -168985492 + FLAM_A SINE Alu 1 133 0 2199 175 91 99 chr3 58539086 58539155 -168985423 + L1 LINE L1 4341 4409 -1737 2040 138 0 0 chr3 58539155 58539459 -168985119 + AluSx SINE Alu 1 304 -8 2199 175 91 99 chr3 58539459 58539518 -168985060 + L1 LINE L1 4409 4467 -1679 1188 172 100 83 chr3 58539518 58539779 -168984799 + AluJo SINE Alu 1 269 -33 2278 83 10 0 chr3 58539779 58540081 -168984497 + AluSg SINE Alu 1 305 -5 1188 172 100 83 chr3 58540081 58540109 -168984469 + AluJo SINE Alu 269 295 -7 2199 175 91 99 chr3 58540109 58540589 -168983989 + L1 LINE L1 4467 4948 -1198 245 119 0 48 chr3 58540958 58541000 -168983578 - Alu SINE Alu -139 164 125 419 286 72 18 chr3 58541004 58541171 -168983407 - MIR SINE MIR -52 156 19 1215 95 18 0 chr3 58541321 58541490 -168983088 - AluSg/x SINE Alu -7 303 132 1550 156 3 19 chr3 58541490 58541797 -168982781 - AluSx SINE Alu -10 302 1 2021 104 0 51 chr3 58541983 58542299 -168982279 + AluSx SINE Alu 1 300 -12 1703 111 0 4 chr3 58542677 58542920 -168981658 - AluSg SINE Alu -68 242 1 1873 132 41 61 chr3 58542924 58543175 -168981403 - L1MB5 LINE L1 -241 5933 5691 2042 128 3 0 chr3 58543175 58543472 -168981106 - AluSp SINE Alu -15 298 1 1873 132 41 61 chr3 58543472 58543614 -168980964 - L1MB5 LINE L1 -483 5691 5548 2064 132 0 3 chr3 58543614 58543925 -168980653 - AluSx SINE Alu -2 310 1 751 190 0 130 chr3 58544514 58544730 -168979848 + AluJb SINE Alu 113 300 -12 1738 155 0 10 chr3 58544911 58545201 -168979377 - AluJb SINE Alu -8 304 18 2087 116 3 6 chr3 58545218 58545529 -168979049 - AluSq SINE Alu -3 310 1 2233 89 3 0 chr3 58545531 58545824 -168978754 - AluSx SINE Alu -18 294 1 466 280 77 14 chr3 58545828 58545971 -168978607 - MIR SINE MIR -56 206 55 834 139 0 0 chr3 58546155 58546292 -168978286 + AluSp/q SINE Alu 174 310 -3 1102 148 45 5 chr3 58546293 58546516 -168978062 + Tigger2 DNA MER2_type 32 263 -2455 2355 58 20 0 chr3 58546519 58546812 -168977766 + AluY SINE Alu 1 299 -12 633 168 0 0 chr3 58546824 58546925 -168977653 + AluSg/x SINE Alu 132 232 -78 32 43 0 0 chr3 58546939 58546985 -168977593 + AT_rich Low_complexity Low_complexity 1 46 0 2189 102 0 0 chr3 58546997 58547291 -168977287 + AluSx SINE Alu 1 294 -18 2073 122 3 6 chr3 58547293 58547604 -168976974 + AluSx SINE Alu 1 310 -2 1986 103 52 0 chr3 58547910 58548200 -168976378 - AluSp SINE Alu -7 306 2 696 294 52 74 chr3 58749019 58749600 -168774978 + L2 LINE L2 2206 2773 -541 305 322 131 37 chr3 58749636 58749881 -168774697 + L2 LINE L2 3004 3271 -1 2038 111 10 3 chr3 58750787 58751085 -168773493 - AluSx SINE Alu -12 300 1 1959 110 4 0 chr3 58751628 58751892 -168772686 + AluSx SINE Alu 30 294 -18 1812 169 3 6 chr3 58751924 58752237 -168772341 + AluSx SINE Alu 1 312 0 8791 91 2 4 chr3 58752887 58754090 -168770488 + HERV9 LTR ERV1 1938 3137 -5262 292 181 40 17 chr3 58754289 58754377 -168770201 + L1MC4 LINE L1 7901 8035 -7 422 295 0 54 chr3 58754420 58754549 -168770029 + L1MC/D LINE L1 5537 5658 -2150 2078 104 0 27 chr3 58754776 58755073 -168769505 + AluSx SINE Alu 1 289 -23 2138 93 0 0 chr3 58755118 58755426 -168769152 + AluSg SINE Alu 1 308 0 1800 61 0 13 chr3 58755427 58755657 -168768921 + AluY SINE Alu 1 227 -84 697 282 58 12 chr3 58755855 58756096 -168768482 + MIR SINE MIR 11 262 0 2260 98 0 0 chr3 58756633 58756940 -168767638 + AluSx SINE Alu 1 307 -5 1463 138 3 94 chr3 58757303 58757600 -168766978 - AluJb SINE Alu -31 281 12 258 273 224 38 chr3 58757607 58757790 -168766788 - MIR SINE MIR -43 219 3 1372 80 6 0 chr3 58758188 58758364 -168766214 + AluSp SINE Alu 1 177 -136 968 158 25 17 chr3 58760062 58760259 -168764319 + LTR12 LTR ERV1 292 478 -236 * 11961 111 7 17 chr3 58760245 58762032 -168762546 + HERV9 LTR ERV1 58 1825 -6574 651 129 11 0 chr3 58770165 58770258 -168754320 + 5S rRNA rRNA 1 94 -27 4615 137 28 67 chr3 58770364 58770581 -168753997 + L1MA9 LINE L1 5132 5356 -956 2140 128 3 0 chr3 58770581 58770885 -168753693 - AluSx SINE Alu -1 311 7 4615 137 28 67 chr3 58770885 58771084 -168753494 + L1MA9 LINE L1 5356 5561 -751 2184 98 10 0 chr3 58771084 58771390 -168753188 + AluSx SINE Alu 1 309 -3 4615 137 28 67 chr3 58771390 58772053 -168752525 + L1MA9 LINE L1 5561 6185 -127 321 240 39 108 chr3 58772054 58772183 -168752395 + L1 LINE L1 4264 4383 -1763 2215 113 0 0 chr3 58772183 58772494 -168752084 + AluY SINE Alu 1 311 0 957 113 43 0 chr3 58772506 58772647 -168751931 + AluSq SINE Alu 43 189 -124 195 69 0 0 chr3 58772796 58772825 -168751753 + (CTCG)n Simple_repeat Simple_repeat 2 30 0 209 29 0 57 chr3 58772869 58772904 -168751674 + (CCCCG)n Simple_repeat Simple_repeat 2 34 0 359 123 12 0 chr3 58777593 58777674 -168746904 + (CA)n Simple_repeat Simple_repeat 1 82 0 430 188 36 73 chr3 58777779 58777852 -168746726 - L1MCa LINE L1 -3709 2717 2643 2394 56 0 7 chr3 58777852 58778154 -168746424 + AluY SINE Alu 1 300 -11 430 188 36 73 chr3 58778154 58778245 -168746333 - L1MCa LINE L1 -3783 2643 2559 698 204 15 29 chr3 58778257 58778394 -168746184 - AluJo SINE Alu -176 136 2 4558 211 62 41 chr3 58778395 58778547 -168746031 - L1MCa LINE L1 -3998 2609 2462 310 87 0 0 chr3 58778547 58778593 -168745985 - MADE1 DNA Mariner 0 80 35 4558 211 62 41 chr3 58778593 58779105 -168745473 - L1MCa LINE L1 -4145 2462 1962 2270 83 3 3 chr3 58779105 58779407 -168745171 - AluSc SINE Alu -7 302 1 4558 211 62 41 chr3 58779407 58779709 -168744869 - L1MCa LINE L1 -4645 1962 1668 2145 124 3 6 chr3 58779709 58780023 -168744555 - AluSq SINE Alu 0 313 1 4558 211 62 41 chr3 58780023 58780055 -168744523 - L1MCa LINE L1 -4939 1668 1638 191 61 30 0 chr3 58780055 58780088 -168744490 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 4558 211 62 41 chr3 58780088 58780578 -168744000 - L1MCa LINE L1 -4969 1638 1160 3831 78 8 8 chr3 58780578 58781089 -168743489 - L1PA10 LINE L1 0 6168 5658 4558 211 62 41 chr3 58781089 58781442 -168743136 - L1MCa LINE L1 -5447 1160 538 1824 132 41 14 chr3 58781644 58781939 -168742639 + AluJb SINE Alu 1 303 -9 1905 128 3 38 chr3 58781945 58782265 -168742313 + AluSq SINE Alu 5 313 0 1961 113 0 80 chr3 58783050 58783376 -168741202 + AluSx SINE Alu 2 301 -11 195 319 43 0 chr3 58783514 58783583 -168740995 - L2 LINE L2 -2 3311 3240 * 276 255 41 51 chr3 58783580 58783678 -168740900 - MIR3 SINE MIR -25 183 87 1501 95 9 22 chr3 58783794 58784025 -168740553 + AluSg/x SINE Alu 83 310 -2 331 320 59 13 chr3 58785405 58785558 -168739020 + L3 LINE CR1 1225 1384 -193 230 149 0 0 chr3 58785558 58785605 -168738973 - AluJo SINE Alu 0 302 256 995 173 0 17 chr3 58785605 58785778 -168738800 - AluJo SINE Alu -142 170 1 1699 158 32 0 chr3 58785784 58786068 -168738510 - AluJb SINE Alu -19 293 1 2140 116 24 0 chr3 58786068 58786404 -168738174 - L1MA4 LINE L1 -246 6054 5711 1559 110 0 5 chr3 58786424 58786666 -168737912 - AluSx SINE Alu 0 304 64 1885 78 0 4 chr3 58787566 58787811 -168736767 + AluSg SINE Alu 55 298 -12 323 125 14 0 chr3 58788654 58788726 -168735852 + (CA)n Simple_repeat Simple_repeat 1 73 0 470 316 19 44 chr3 58788763 58788855 -168735723 + MIR SINE MIR 62 155 -107 2202 101 0 13 chr3 58788855 58789161 -168735417 - AluSx SINE Alu -10 302 1 470 316 19 44 chr3 58789161 58789274 -168735304 + MIR SINE MIR 155 262 0 279 191 83 24 chr3 58789263 58789370 -168735208 - MIR SINE MIR -63 145 44 * 211 276 285 0 chr3 58790476 58790599 -168733979 - MIR SINE MIR -34 228 71 269 89 22 0 chr3 58792363 58792408 -168732170 + (TTTC)n Simple_repeat Simple_repeat 1 46 0 901 195 67 0 chr3 58792408 58792572 -168732006 - FAM SINE Alu 0 175 1 265 330 89 0 chr3 58792937 58793049 -168731529 + MIR3 SINE MIR 11 132 -76 227 343 29 7 chr3 58793240 58793377 -168731201 + (TTGGGG)n Simple_repeat Simple_repeat 3 142 0 304 281 10 10 chr3 58796524 58796620 -168727958 + MER94 DNA DNA 39 134 0 819 128 0 0 chr3 58797226 58797343 -168727235 + FLAM_C SINE Alu 2 118 -25 387 0 0 0 chr3 58797346 58797389 -168727189 + (TC)n Simple_repeat Simple_repeat 2 44 0 279 0 0 0 chr3 58797389 58797420 -168727158 + (TA)n Simple_repeat Simple_repeat 1 31 0 243 0 0 0 chr3 58797419 58797446 -168727132 + (CA)n Simple_repeat Simple_repeat 2 28 0 * 297 258 91 8 chr3 58797435 58797567 -168727011 + L1MC5 LINE L1 7719 7861 -100 703 266 52 26 chr3 58797668 58797939 -168726639 - MLT1J LTR MaLR -2 509 232 283 240 8 8 chr3 58798105 58798226 -168726352 + (CA)n Simple_repeat Simple_repeat 2 122 0 325 276 17 9 chr3 58798249 58798365 -168726213 + (CA)n Simple_repeat Simple_repeat 1 117 0 1001 140 21 11 chr3 58800607 58800793 -168723785 - MER53 DNA DNA -1 188 1 267 189 0 0 chr3 58802273 58802326 -168722252 + (TG)n Simple_repeat Simple_repeat 1 53 0 1025 202 131 38 chr3 58802483 58802850 -168721728 - HAL1b LINE L1 -7 1341 941 192 154 0 62 chr3 58803144 58803209 -168721369 + CT-rich Low_complexity Low_complexity 4 64 0 2739 220 108 17 chr3 58804889 58805087 -168719491 + MER69B DNA AcHobo 84 262 -2264 2529 43 0 0 chr3 58805087 58805391 -168719187 - AluY SINE Alu -7 304 1 2739 220 108 17 chr3 58805391 58806191 -168718387 + MER69B DNA AcHobo 262 1223 -3 733 215 0 21 chr3 58807082 58807226 -168717352 - MER2 DNA MER2_type -204 141 1 9774 179 29 9 chr3 58807226 58807602 -168716976 - L1 LINE L1 -1404 5702 5335 6129 111 63 106 chr3 58807602 58808112 -168716466 + Tigger3b DNA MER2_type 1 531 -2497 333 0 0 0 chr3 58808112 58808149 -168716429 + (TG)n Simple_repeat Simple_repeat 2 38 0 6129 111 63 106 chr3 58808149 58808924 -168715654 + Tigger3b DNA MER2_type 531 1231 0 9774 179 29 9 chr3 58808924 58809564 -168715014 - L1 LINE L1 -1771 5335 4709 2463 147 43 5 chr3 58809564 58809980 -168714598 - MSTB1 LTR MaLR 0 432 1 9774 179 29 9 chr3 58809980 58810996 -168713582 - L1 LINE L1 -2397 4709 3629 1049 242 0 0 chr3 58811078 58811305 -168713273 - AluJo SINE Alu -81 231 5 1889 187 52 20 chr3 58811315 58811716 -168712862 - L1 LINE L1 -4959 2071 1658 1446 230 35 12 chr3 58811717 58812139 -168712439 - L1M4 LINE L1 -3007 3139 2708 4118 186 49 15 chr3 58812247 58812517 -168712061 - L1MB3 LINE L1 -60 6123 5864 2179 90 6 13 chr3 58812517 58812829 -168711749 - AluSp SINE Alu -3 310 1 4118 186 49 15 chr3 58812829 58812873 -168711705 - L1MB3 LINE L1 -319 5864 5823 417 20 0 0 chr3 58812873 58812923 -168711655 + (TA)n Simple_repeat Simple_repeat 1 50 0 4118 186 49 15 chr3 58812923 58813915 -168710663 - L1MB3 LINE L1 -360 5823 4772 1795 142 3 7 chr3 58813915 58814222 -168710356 - AluSx SINE Alu 0 306 1 4118 186 49 15 chr3 58814222 58814258 -168710320 - L1MB3 LINE L1 -1411 4772 4739 5499 48 1 10 chr3 58814258 58814938 -168709640 - L1PA8 LINE L1 0 6172 5499 1463 235 65 15 chr3 58814956 58815292 -168709286 + BaEV-int LTR ERV1 833 1185 -5464 12655 206 27 32 chr3 58815401 58816244 -168708334 + BaEV-int LTR ERV1 4718 5563 -2222 232 148 0 98 chr3 58816244 58816305 -168708273 - HAL1 LINE L1 -656 1851 1797 12655 206 27 32 chr3 58816305 58818026 -168706552 + BaEV-int LTR ERV1 5563 7330 -455 25945 60 3 1 chr3 58818126 58822237 -168702341 + L1PA6 LINE L1 2028 6145 -9 1799 138 0 4 chr3 58822381 58822650 -168701928 - AluSx SINE Alu -44 268 1 716 198 0 0 chr3 58822712 58822833 -168701745 + FLAM_A SINE Alu 5 125 -8 226 325 100 33 chr3 58823797 58823917 -168700661 + MIR SINE MIR 18 145 -63 338 225 135 36 chr3 58824401 58824512 -168700066 + MER91C DNA MER1_type 3 124 -16 744 204 96 0 chr3 58826162 58826319 -168698259 + MER58C DNA MER1_type 44 215 0 2118 110 3 10 chr3 58826932 58827242 -168697336 - AluSq SINE Alu -5 308 1 2138 110 10 0 chr3 58827255 58827554 -168697024 - AluSq SINE Alu -11 302 1 193 208 0 62 chr3 58827939 58827987 -168696591 - L2 LINE L2 -22 3250 3206 538 216 74 61 chr3 58828225 58828456 -168696122 + MER106A DNA MER1_type 1 234 -2 1151 152 38 52 chr3 58828458 58828668 -168695910 - MER20 DNA MER1_type -12 207 1 2205 90 3 3 chr3 58829005 58829306 -168695272 - AluSc SINE Alu -8 301 1 271 279 47 54 chr3 58829625 58829754 -168694824 - MER5B DNA MER1_type -2 176 49 1331 147 69 4 chr3 58830162 58830393 -168694185 + AluJb SINE Alu 12 257 -55 21 0 0 0 chr3 58832893 58832914 -168691664 + AT_rich Low_complexity Low_complexity 1 21 0 26 64 0 0 chr3 58832983 58833030 -168691548 + AT_rich Low_complexity Low_complexity 1 47 0 1631 154 3 60 chr3 58833048 58833231 -168691347 - AluJb SINE Alu -12 300 141 2217 92 0 3 chr3 58833231 58833524 -168691054 + AluSp SINE Alu 1 292 -21 1631 154 3 60 chr3 58833524 58833658 -168690920 - AluJb SINE Alu -171 141 1 11485 112 22 19 chr3 58833704 58835434 -168689144 + L1P LINE L1 41 1777 -4369 31 71 0 12 chr3 58835755 58835784 -168688794 + AT_rich Low_complexity Low_complexity 1 29 -54 1756 121 53 7 chr3 58835784 58836065 -168688513 - AluSx SINE Alu -18 294 1 31 71 0 12 chr3 58836065 58836119 -168688459 + AT_rich Low_complexity Low_complexity 29 83 0 2247 86 0 29 chr3 58836945 58837260 -168687318 - AluSc SINE Alu -3 306 1 1111 167 115 65 chr3 58837844 58838124 -168686454 + MER58B DNA MER1_type 3 303 -2117 2444 71 0 0 chr3 58838124 58838433 -168686145 - AluY SINE Alu -2 309 1 1111 167 115 65 chr3 58838433 58838475 -168686103 + MER58B DNA MER1_type 303 341 0 518 272 128 20 chr3 58838690 58838885 -168685693 + L2 LINE L2 3098 3313 0 193 298 0 0 chr3 58839428 58839475 -168685103 - MIR SINE MIR -122 140 94 216 0 0 0 chr3 58840838 58840862 -168683716 + (A)n Simple_repeat Simple_repeat 1 24 0 188 185 19 0 chr3 58841179 58841233 -168683345 + (TG)n Simple_repeat Simple_repeat 1 55 0 25 0 0 0 chr3 58842815 58842840 -168681738 + AT_rich Low_complexity Low_complexity 1 25 0 183 129 0 0 chr3 58843038 58843069 -168681509 + (TG)n Simple_repeat Simple_repeat 2 32 0 1729 174 10 10 chr3 58847867 58848166 -168676412 - AluJb SINE Alu -13 299 1 2238 106 10 0 chr3 58848173 58848476 -168676102 - AluSq SINE Alu -7 306 1 354 80 0 0 chr3 58850060 58850110 -168674468 + (TCCC)n Simple_repeat Simple_repeat 1 50 0 318 67 0 0 chr3 58851443 58851488 -168673090 + (TG)n Simple_repeat Simple_repeat 2 46 0 363 195 52 0 chr3 58852422 58852499 -168672079 - L2 LINE L2 -5 3267 3187 470 232 48 0 chr3 58854339 58854464 -168670114 + MIR SINE MIR 48 178 -84 378 307 114 0 chr3 58854731 58854897 -168669681 + MIR SINE MIR 24 208 -54 276 282 95 57 chr3 58856665 58856927 -168667651 - L2 LINE L2 -189 3083 2812 460 284 81 76 chr3 58857651 58858045 -168666533 - MLT1I LTR MaLR -13 396 1 267 156 47 47 chr3 58858049 58858113 -168666465 - MLT1J LTR MaLR -447 64 1 182 309 18 0 chr3 58858616 58858671 -168665907 - MIR SINE MIR -198 64 9 222 160 0 0 chr3 58858763 58858813 -168665765 + CT-rich Low_complexity Low_complexity 2 51 0 388 274 134 7 chr3 58858933 58859210 -168665368 + L1MC2 LINE L1 3588 3899 -2247 400 214 62 0 chr3 58860075 58860187 -168664391 + L1MC2 LINE L1 4264 4382 -1764 257 98 49 0 chr3 58860187 58860228 -168664350 + L1MB1 LINE L1 6017 6059 -109 1082 246 26 14 chr3 58860229 58860577 -168664001 + L1MC2 LINE L1 4364 4702 -1444 590 153 9 0 chr3 58860578 58860689 -168663889 + GA-rich Low_complexity Low_complexity 1 112 0 2765 187 62 50 chr3 58860689 58861903 -168662675 + L1MC2 LINE L1 4692 5918 -426 1164 215 159 19 chr3 58861933 58862486 -168662092 + L1MEc LINE L1 2026 2596 -3619 826 168 70 0 chr3 58862492 58862635 -168661943 + AluJb SINE Alu 1 153 -159 1867 188 0 6 chr3 58862704 58863090 -168661488 + AluJb SINE Alu 1 384 0 1207 217 29 92 chr3 58863095 58863145 -168661433 + L1MEc LINE L1 2574 2626 -3589 2588 128 49 7 chr3 58863145 58863553 -168661025 + MSTA LTR MaLR 4 428 0 1207 217 29 92 chr3 58863553 58863997 -168660581 + L1MEc LINE L1 2626 3003 -3212 1828 183 0 0 chr3 58863997 58864287 -168660291 + AluJo SINE Alu 1 290 -22 1207 217 29 92 chr3 58864287 58864395 -168660183 + L1MEc LINE L1 3003 3116 -3099 6417 91 2 0 chr3 58864497 58865334 -168659244 + HERV9 LTR ERV1 4377 5215 -3184 3112 97 112 24 chr3 58865323 58865867 -168658711 - MER4-int LTR ERV1 -2130 4468 3877 * 2750 117 96 9 chr3 58865837 58866368 -168658210 - MER4-int LTR ERV1 -3278 3320 2744 * 2199 129 3 0 chr3 58866382 58866684 -168657894 - AluSq SINE Alu -10 303 1 1108 188 147 0 chr3 58866705 58866929 -168657649 + LTR8 LTR ERV1 1 257 -434 3897 89 96 16 chr3 58866929 58867270 -168657308 - MER4A-int LTR ERV1 -4103 2495 2183 2155 125 7 0 chr3 58867270 58867566 -168657012 - AluSx SINE Alu -14 298 1 3897 89 96 16 chr3 58867566 58867909 -168656669 - MER4A-int LTR ERV1 -4415 2183 1756 4537 103 38 42 chr3 58867918 58868033 -168656545 - MER4A-int LTR ERV1 -5560 1198 1084 288 0 0 0 chr3 58868033 58868065 -168656513 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 4537 103 38 42 chr3 58868065 58868128 -168656450 - MER4A-int LTR ERV1 -5674 1084 1022 1932 132 0 28 chr3 58868128 58868457 -168656121 + AluSg SINE Alu 11 310 0 4537 103 38 42 chr3 58868457 58869225 -168655353 - MER4A-int LTR ERV1 -5736 1022 198 1405 234 36 10 chr3 58869302 58869609 -168654969 - MER4A-int LTR ERV1 -4172 2159 1845 304 95 0 152 chr3 58869645 58869750 -168654828 - MER4A-int LTR ERV1 -5759 839 751 2354 112 97 22 chr3 58869795 58870087 -168654491 - MER4A-int LTR ERV1 -6010 588 319 342 0 0 0 chr3 58870087 58870125 -168654453 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2354 112 97 22 chr3 58870125 58870319 -168654259 - MER4A-int LTR ERV1 -6279 319 1 1812 149 3 35 chr3 58870321 58870676 -168653902 - MER4A LTR ERV1 0 664 263 614 124 21 10 chr3 58870676 58870773 -168653805 - MER4A LTR ERV1 -566 98 1 2705 192 39 38 chr3 58870773 58871357 -168653221 - L1M4c LINE L1 -5595 789 205 971 61 61 74 chr3 58871357 58871403 -168653175 - LTR10C LTR ERV1 0 591 546 2218 101 7 10 chr3 58871403 58871690 -168652888 + AluY SINE Alu 1 288 -23 321 26 0 0 chr3 58871690 58871728 -168652850 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 2218 101 7 10 chr3 58871728 58871748 -168652830 + AluY SINE Alu 288 307 -4 971 61 61 74 chr3 58871748 58871849 -168652729 - LTR10C LTR ERV1 -45 546 446 603 178 201 6 chr3 58871950 58872124 -168652454 - L1MCa LINE L1 -5316 1110 903 2177 159 46 25 chr3 58872133 58872566 -168652012 - LTR7 LTR ERV1 -8 442 1 2482 138 8 12 chr3 58872566 58872966 -168651612 - HERVH LTR ERV1 0 7713 7316 2173 194 38 2 chr3 58872966 58873364 -168651214 - MSTB LTR MaLR -14 412 1 6702 226 47 60 chr3 58873365 58874374 -168650204 - L1 LINE L1 -2085 5480 4459 2292 124 42 14 chr3 58874374 58874728 -168649850 + THE1B LTR MaLR 1 364 0 6702 226 47 60 chr3 58874728 58875842 -168648736 - L1 LINE L1 -3106 4459 3380 1913 132 44 20 chr3 58875842 58876138 -168648440 - AluSx SINE Alu -9 303 1 6702 226 47 60 chr3 58876138 58876608 -168647970 - L1 LINE L1 -4185 3380 2905 419 120 0 40 chr3 58876616 58876627 -168647951 - FLAM_C SINE Alu -172 140 130 1585 143 108 35 chr3 58876627 58876913 -168647665 - AluSg SINE Alu -3 307 1 419 120 0 40 chr3 58876913 58876976 -168647602 - FLAM_C SINE Alu -182 130 69 2296 104 7 3 chr3 58877087 58877395 -168647183 + AluY SINE Alu 1 309 -2 728 233 97 10 chr3 58877398 58877604 -168646974 - MER93a LTR ERV1 -118 284 61 2449 217 31 29 chr3 58877704 58878528 -168646050 - L1M2 LINE L1 -4433 2735 1907 458 290 84 82 chr3 58878987 58879357 -168645221 - L1M2 LINE L1 -5854 1244 95 1403 173 11 15 chr3 58879497 58879769 -168644809 - L1MC2 LINE L1 -22 6322 6052 481 246 28 0 chr3 58879796 58879938 -168644640 - L1M4 LINE L1 -1019 5127 4982 474 204 168 0 chr3 58879974 58880087 -168644491 - L1PB4 LINE L1 -4 6152 6021 * 1630 221 67 91 chr3 58880072 58880631 -168643947 - L1M4 LINE L1 -1730 4416 3869 2002 132 0 0 chr3 58880631 58880912 -168643666 - AluSx SINE Alu 0 312 32 1630 221 67 91 chr3 58880912 58881295 -168643283 - L1M4 LINE L1 -2277 3869 3478 307 176 24 31 chr3 58881295 58881469 -168643109 + AluJo SINE Alu 85 289 -13 533 274 158 0 chr3 58881477 58881743 -168642835 - L1M4 LINE L1 -2658 3488 3181 2169 151 18 41 chr3 58881921 58882697 -168641881 - MER61C-int LTR ERV1 -4377 2644 182 754 233 0 13 chr3 58882799 58882949 -168641629 - MER61C-int LTR ERV1 -5068 149 2 612 162 13 35 chr3 58882949 58883084 -168641494 - MER61C LTR ERV1 0 434 330 11802 197 37 22 chr3 58883297 58885106 -168639472 - L1MB5 LINE L1 -122 6288 4507 1823 150 47 7 chr3 58885106 58885406 -168639172 - AluJb SINE Alu 0 312 1 11802 197 37 22 chr3 58885406 58887258 -168637320 - L1MB5 LINE L1 -1903 4507 2573 327 209 0 0 chr3 58887255 58887322 -168637256 - L1MB5 LINE L1 -4610 1774 1708 * 2598 83 0 80 chr3 58887840 58888226 -168636352 + THE1A LTR MaLR 1 355 0 11635 104 4 5 chr3 58888226 58889796 -168634782 + THE1A-int LTR MaLR 1 1569 -11 695 287 78 69 chr3 58891007 58891515 -168633063 - L1MC4a LINE L1 -1938 5870 5355 509 43 21 170 chr3 58891515 58891554 -168633024 + MADE1 DNA Mariner 1 20 -60 2302 109 0 0 chr3 58891554 58891847 -168632731 - AluSx SINE Alu -19 293 1 509 43 21 170 chr3 58891847 58891901 -168632677 + MADE1 DNA Mariner 20 80 0 695 287 78 69 chr3 58891901 58891960 -168632618 - L1MC4a LINE L1 -2453 5355 5298 2308 119 0 0 chr3 58892104 58892415 -168632163 - AluY SINE Alu 0 311 1 1816 141 56 6 chr3 58892925 58893245 -168631333 - MER1B DNA MER1_type -1 336 1 490 287 118 60 chr3 58893567 58893815 -168630763 - L1MC4a LINE L1 -1155 4991 4759 2249 105 10 0 chr3 58893815 58894110 -168630468 - AluSx SINE Alu -3 309 12 490 287 118 60 chr3 58894110 58894579 -168629999 - L1MC4a LINE L1 -1387 4759 4232 23 0 0 0 chr3 58894585 58894608 -168629970 + AT_rich Low_complexity Low_complexity 1 23 0 244 284 88 27 chr3 58894638 58894786 -168629792 - L1MC4a LINE L1 -1923 4223 4067 414 172 172 20 chr3 58894814 58894913 -168629665 - FRAM SINE Alu -43 133 20 362 309 46 89 chr3 58895217 58895609 -168628969 - L1M4 LINE L1 -1868 4278 3907 4191 124 11 67 chr3 58895609 58896341 -168628237 - LTR8 LTR ERV1 0 691 1 362 309 46 89 chr3 58896341 58896408 -168628170 - L1M4 LINE L1 -2239 3907 3839 2487 187 143 47 chr3 58896486 58896826 -168627752 - LTR48 LTR ERV1 -30 750 444 2363 85 0 0 chr3 58896826 58897139 -168627439 - AluSg SINE Alu 0 313 1 2487 187 143 47 chr3 58897139 58897477 -168627101 - LTR48 LTR ERV1 -336 444 1 290 342 27 0 chr3 58897573 58897684 -168626894 + LTR67 LTR ERVL 109 222 -335 243 336 33 8 chr3 58897777 58897899 -168626679 + LTR67 LTR ERVL 418 542 -15 325 245 159 31 chr3 58897899 58898062 -168626516 - L1M4 LINE L1 -2307 3839 3656 660 267 29 3 chr3 58898082 58898277 -168626301 - L1ME LINE L1 -457 5664 5466 797 258 36 8 chr3 58898445 58898693 -168625885 - Charlie7 DNA MER1_type -314 2298 2044 1435 103 35 0 chr3 58899071 58899274 -168625304 - MER4E LTR ERV1 -569 210 1 347 300 43 7 chr3 58900229 58900369 -168624209 + MER117 DNA MER1_type 4 148 -49 8665 65 38 19 chr3 58901098 58901444 -168623134 - MER61A-int LTR ERV1 -2561 2656 2318 2221 108 10 0 chr3 58901444 58901741 -168622837 + AluSc SINE Alu 1 300 -9 8665 65 38 19 chr3 58901741 58902591 -168621987 - MER61A-int LTR ERV1 -2899 2318 1433 303 71 0 0 chr3 58902591 58902633 -168621945 + (CA)n Simple_repeat Simple_repeat 1 42 0 8665 65 38 19 chr3 58902633 58902660 -168621918 - MER61A-int LTR ERV1 -3784 1433 1408 3602 172 25 31 chr3 58902709 58903420 -168621158 - MER61A-int LTR ERV1 -4510 707 1 2059 133 68 3 chr3 58903420 58903742 -168620836 - MER61A LTR ERV1 0 343 1 226 200 40 13 chr3 58903752 58903827 -168620751 - L1MDa LINE L1 -4371 2570 2494 9703 81 2 13 chr3 58903958 58904796 -168619782 - MER61-int LTR ERV1 -1050 4167 3346 2301 103 0 3 chr3 58904796 58905098 -168619480 - AluSc SINE Alu -8 301 1 9703 81 2 13 chr3 58905098 58905542 -168619036 - MER61-int LTR ERV1 -1871 3346 2899 623 275 70 72 chr3 58905914 58906207 -168618371 - L1MCc LINE L1 -2153 4788 4496 1768 178 27 3 chr3 58906207 58906539 -168618039 + MER58B DNA MER1_type 1 340 -1 623 275 70 72 chr3 58906539 58907572 -168617006 - L1MCc LINE L1 -2445 4496 3465 340 260 127 17 chr3 58907723 58907896 -168616682 - L1MDa LINE L1 -1863 4677 4486 465 242 52 76 chr3 58907905 58908103 -168616475 - L1MCc LINE L1 -4620 2321 2120 2325 99 0 3 chr3 58908103 58908407 -168616171 - AluY SINE Alu -6 305 3 2145 135 0 0 chr3 58908411 58908707 -168615871 - AluSx SINE Alu -16 296 1 2243 115 3 0 chr3 58908715 58909010 -168615568 - AluSx SINE Alu -6 306 11 465 242 52 76 chr3 58909010 58909211 -168615367 - L1MCc LINE L1 -4831 2110 1906 457 233 112 17 chr3 58909211 58909327 -168615251 + FLAM_A SINE Alu 5 131 -2 465 242 52 76 chr3 58909327 58909616 -168614962 - L1MCc LINE L1 -5035 1906 1274 504 0 0 0 chr3 58909867 58909923 -168614655 + (TG)n Simple_repeat Simple_repeat 1 56 0 699 115 0 10 chr3 58910438 58910542 -168614036 - AluJb SINE Alu -9 303 201 5596 84 1 11 chr3 58910642 58911377 -168613201 - HERV9 LTR ERV1 -3592 4807 4080 14202 89 5 8 chr3 58911384 58913278 -168611300 - HERV9 LTR ERV1 -5260 3139 1251 5259 117 5 12 chr3 58913378 58914138 -168610440 - HERV9 LTR ERV1 -7604 795 41 6375 80 14 2 chr3 58914152 58914969 -168609609 - LTR12 LTR ERV1 0 826 1 6398 223 56 25 chr3 58914969 58917012 -168607566 - L1MDa LINE L1 -2115 4425 2337 1101 173 49 68 chr3 58917150 58917416 -168607162 + MER67A LTR ERV1 283 543 0 1358 254 59 45 chr3 58917484 58918090 -168606488 + L1MDb LINE L1 793 1407 -5002 768 235 59 0 chr3 58918212 58918433 -168606145 - Charlie7 DNA MER1_type -577 2035 1802 360 249 166 35 chr3 58918432 58918601 -168605977 - Charlie7 DNA MER1_type -2085 527 337 * 343 288 64 0 chr3 58918669 58918794 -168605784 + L2 LINE L2 3180 3312 -1 783 248 223 12 chr3 58918942 58919345 -168605233 - L2 LINE L2 0 3313 2826 2575 171 93 25 chr3 58920279 58920805 -168603773 + REP3 LTR ERV 1 562 0 305 306 71 20 chr3 58921226 58921422 -168603156 + L1MDb LINE L1 2420 2625 -3962 1127 233 9 5 chr3 58921460 58921679 -168602899 + MER58A DNA MER1_type 2 221 -3 2459 74 0 7 chr3 58921799 58922097 -168602481 + AluY SINE Alu 1 296 -15 1202 101 20 35 chr3 58922097 58922289 -168602289 + THE1B LTR MaLR 176 364 0 12141 86 9 1 chr3 58922289 58923856 -168600722 + THE1B-int LTR MaLR 1 1580 0 2374 111 5 53 chr3 58923856 58924042 -168600536 + THE1B LTR MaLR 1 161 -203 2305 98 3 3 chr3 58924042 58924337 -168600241 + AluSq SINE Alu 1 295 -18 2374 111 5 53 chr3 58924337 58924530 -168600048 + THE1B LTR MaLR 161 362 -2 647 111 0 0 chr3 58924861 58924951 -168599627 - AluJ/FLAM SINE Alu -221 91 2 689 258 35 85 chr3 58925252 58925651 -168598927 + MLT1J LTR MaLR 100 478 -33 1930 155 3 0 chr3 58925891 58926187 -168598391 + AluJb SINE Alu 1 297 -15 547 291 110 40 chr3 58926355 58926836 -168597742 - HAL1 LINE L1 -867 1640 1126 2118 107 33 0 chr3 58927387 58927686 -168596892 + AluSq SINE Alu 5 313 0 835 259 97 48 chr3 58929102 58929184 -168595394 + L1MC4 LINE L1 6464 6541 -1501 2089 110 11 0 chr3 58929184 58929488 -168595090 + AluSq SINE Alu 1 307 0 835 259 97 48 chr3 58929488 58929694 -168594884 + L1MC4 LINE L1 6541 6767 -1275 287 157 71 14 chr3 58929812 58929882 -168594696 - L1MA9 LINE L1 -1 6311 6238 1467 52 0 0 chr3 58930063 58930237 -168594341 + HERV17 LTR ERV1 876 1049 -7577 * 1990 85 0 27 chr3 58930224 58930655 -168593923 + HERV17 LTR ERV1 1275 1740 -5156 * 5956 92 8 1 chr3 58930634 58931425 -168593153 + HERV17 LTR ERV1 7604 8399 0 6392 79 8 2 chr3 58931425 58932246 -168592332 + LTR12 LTR ERV1 1 826 0 1230 223 185 2 chr3 58932246 58932641 -168591937 + L1M4 LINE L1 4028 4494 -1652 223 296 43 0 chr3 58932881 58932996 -168591582 - L2 LINE L2 -3 3269 3150 347 0 0 23 chr3 58933082 58933126 -168591452 + (TCTCCC)n Simple_repeat Simple_repeat 1 43 0 7377 57 4 44 chr3 58933132 58934861 -168589717 + SVA Other Other 1 1386 0 2947 183 27 2 chr3 58934861 58935412 -168589166 + L1M4 LINE L1 4479 5043 -1103 1648 145 0 107 chr3 58935421 58935759 -168588819 + AluJb SINE Alu 1 302 0 361 288 22 58 chr3 58936280 58936419 -168588159 + LTR2 LTR ERV1 1 134 -315 360 164 0 0 chr3 58936451 58936512 -168588066 + LTR2 LTR ERV1 266 326 -123 943 167 6 6 chr3 58936512 58936680 -168587898 + LTR2 LTR ERV1 282 449 0 2155 70 4 18 chr3 58937340 58937612 -168586966 + AluY SINE Alu 37 304 -7 201 295 158 0 chr3 58939242 58939381 -168585197 + L2 LINE L2 643 803 -2511 826 189 26 0 chr3 58939385 58939538 -168585040 + MER3 DNA MER1_type 1 157 -52 803 327 111 6 chr3 58939550 58940036 -168584542 + L2 LINE L2 799 1335 -1979 600 252 33 85 chr3 58940120 58940426 -168584152 + LTR2-int LTR ERV1 61 350 -4521 1560 231 50 52 chr3 58940502 58940801 -168583777 + LTR2-int LTR ERV1 523 822 -4049 1958 150 10 0 chr3 58940801 58941107 -168583471 - AluJb SINE Alu -2 310 2 1560 231 50 52 chr3 58941107 58941284 -168583294 + LTR2-int LTR ERV1 822 998 -3873 263 90 35 19 chr3 58941412 58941483 -168583095 + L1PA2 LINE L1 6079 6153 -2 348 109 173 83 chr3 58941549 58941743 -168582835 + LTR2-int LTR ERV1 1801 2107 -4651 2333 106 0 0 chr3 58941743 58942045 -168582533 + AluY SINE Alu 1 302 -9 290 225 0 0 chr3 58942054 58942125 -168582453 + L1MB3 LINE L1 3960 4030 -2116 1983 154 129 29 chr3 58942129 58942209 -168582369 + LTR47A LTR ERVL 2 73 -379 1940 128 57 35 chr3 58942209 58942576 -168582002 + THE1C LTR MaLR 1 375 0 1983 154 129 29 chr3 58942576 58942905 -168581673 + LTR47A LTR ERVL 73 452 0 1164 183 5 0 chr3 58942906 58943103 -168581475 + L1MB3 LINE L1 4033 4230 -1916 3010 141 62 47 chr3 58943213 58943765 -168580813 + MER4E LTR ERV1 220 779 0 312 188 0 0 chr3 58943866 58943935 -168580643 + (CA)n Simple_repeat Simple_repeat 1 69 0 1926 168 109 24 chr3 58944164 58944625 -168579953 + LTR10A LTR ERV1 1 548 -61 1083 210 61 32 chr3 58944634 58944944 -168579634 + LTR10A-int LTR ERV1 1 319 -6330 293 283 43 0 chr3 58945226 58945318 -168579260 + LTR10A-int LTR ERV1 975 1070 -5579 12411 138 30 39 chr3 58945329 58949575 -168575003 + HERV17 LTR ERV1 723 6646 -3 2108 162 105 59 chr3 58949577 58950101 -168574477 + LTR10A LTR ERV1 1 548 -61 2302 113 0 0 chr3 58950784 58951094 -168573484 + AluSx SINE Alu 1 310 -2 361 305 43 0 chr3 58951104 58951245 -168573333 + L1MC4a LINE L1 5735 5881 -1927 1290 120 0 11 chr3 58951847 58952030 -168572548 + THE1B LTR MaLR 1 181 -183 1016 82 0 0 chr3 58952032 58952154 -168572424 + AluY SINE Alu 1 122 -189 234 171 0 0 chr3 58952254 58952289 -168572289 - Alu SINE Alu -265 38 4 227 178 0 22 chr3 58952259 58952304 -168572274 - Alu SINE Alu -135 168 125 * 5556 155 33 14 chr3 58952304 58952813 -168571765 + L1MB3 LINE L1 4656 5154 -1029 2035 115 42 0 chr3 58952813 58953099 -168571479 + AluSx SINE Alu 1 298 -14 5556 155 33 14 chr3 58953099 58953502 -168571076 + L1MB3 LINE L1 5154 5548 -635 1540 154 0 0 chr3 58953502 58953735 -168570843 + 7SLRNA srpRNA srpRNA 86 318 -2 5556 155 33 14 chr3 58953735 58954320 -168570258 + L1MB3 LINE L1 5548 6183 0 1404 201 44 15 chr3 58954342 58954616 -168569962 + AluJo SINE Alu 1 282 -30 429 20 0 0 chr3 58954617 58954667 -168569911 + (TGAA)n Simple_repeat Simple_repeat 4 53 0 390 232 73 40 chr3 58954760 58954911 -168569667 - MER117 DNA MER1_type -37 160 5 223 267 69 30 chr3 58955540 58955641 -168568937 + MIR SINE MIR 41 145 -63 485 236 64 119 chr3 58958144 58958346 -168566232 + L1ME2 LINE L1 5852 6063 -271 1870 141 79 7 chr3 58958346 58958637 -168565941 - AluJb SINE Alu 0 312 1 485 236 64 119 chr3 58958637 58958771 -168565807 + L1ME2 LINE L1 6063 6330 -4 221 311 96 15 chr3 58959694 58959829 -168564749 + L2 LINE L2 3125 3270 -2 582 241 66 6 chr3 58960095 58960261 -168564317 + FRAM SINE Alu 1 40 0 2085 154 0 0 chr3 58960374 58960755 -168563823 - AluSx SINE Alu 0 381 1 1748 192 46 61 chr3 58960756 58961230 -168563348 - MLT1C LTR MaLR 0 467 1 629 63 0 0 chr3 58961540 58961619 -168562959 - L1PA13 LINE L1 -437 5731 5653 2741 93 26 19 chr3 58961620 58962037 -168562541 + L1PA13 LINE L1 5737 6156 -7 289 243 58 39 chr3 58962700 58962803 -168561775 + Cheshire DNA MER1_type 1 105 -2315 10440 191 47 31 chr3 58962905 58963612 -168560966 + Cheshire DNA MER1_type 104 798 -1622 2270 106 7 0 chr3 58963612 58963913 -168560665 - AluSx SINE Alu -9 303 1 10440 191 47 31 chr3 58963913 58965086 -168559492 + Cheshire DNA MER1_type 798 2029 -391 2721 114 28 21 chr3 58965086 58965508 -168559070 - MSTA LTR MaLR -3 425 1 10440 191 47 31 chr3 58965508 58965904 -168558674 + Cheshire DNA MER1_type 2029 2417 -3 5213 227 65 17 chr3 58965921 58966023 -168558555 - L1M4 LINE L1 -743 5403 5307 2648 165 50 12 chr3 58966023 58966519 -168558059 - MLT2B2 LTR ERVL 0 515 1 5213 227 65 17 chr3 58966519 58967940 -168556638 - L1M4 LINE L1 -839 5307 3807 943 172 121 0 chr3 58968009 58968183 -168556395 + MER7A DNA MER2_type 1 193 -153 1760 122 52 31 chr3 58968341 58968628 -168555950 - AluSx SINE Alu -19 293 1 2048 154 6 3 chr3 58969332 58969643 -168554935 - AluJb SINE Alu 0 312 1 470 271 96 73 chr3 58970649 58971128 -168553450 + L1MEd LINE L1 637 1126 -5079 419 286 141 24 chr3 58971124 58971414 -168553164 + L1MEd LINE L1 1497 1820 -4576 * 1446 135 9 75 chr3 58971569 58971903 -168552675 + MER33 DNA MER1_type 1 312 -12 2597 247 60 39 chr3 58971943 58973178 -168551400 + L1MEd LINE L1 2059 3267 -2948 2958 220 43 15 chr3 58974407 58975076 -168549502 + MER76 LTR ERV 1 688 0 265 139 43 38 chr3 58975903 58975965 -168548613 - MLT1A1 LTR MaLR 0 365 314 1167 191 90 74 chr3 58976031 58976330 -168548248 - MLT1A1 LTR MaLR -61 304 1 367 184 92 0 chr3 58976551 58976627 -168547951 - MLT1K LTR MaLR -6 582 500 2372 88 0 10 chr3 58976642 58976948 -168547630 + AluSq SINE Alu 1 303 -10 1167 234 156 38 chr3 58976957 58977405 -168547173 - MLT1D LTR MaLR -2 503 3 2450 252 42 24 chr3 58979579 58979791 -168544787 - L1ME2 LINE L1 -47 6117 5910 2482 68 0 3 chr3 58979791 58980098 -168544480 + AluY SINE Alu 1 306 -5 2450 252 42 24 chr3 58980098 58980663 -168543915 - L1ME2 LINE L1 -254 5910 5326 427 271 0 8 chr3 58981591 58981713 -168542865 + MER94 DNA DNA 3 123 -11 251 255 69 10 chr3 58982347 58982449 -168542129 - MIR SINE MIR -61 147 40 246 305 99 0 chr3 58983364 58983505 -168541073 + L2 LINE L2 2720 2874 -440 263 323 104 0 chr3 58983637 58983801 -168540777 + L2 LINE L2 3101 3281 -32 980 222 13 4 chr3 58983830 58984064 -168540514 - MER46A DNA MER2_type 0 236 1 819 243 78 42 chr3 58984075 58984409 -168540169 + MER74B LTR ERVL 195 540 -82 2402 95 0 0 chr3 58984478 58984783 -168539795 + AluSg SINE Alu 1 305 -5 315 0 0 0 chr3 58984783 58984818 -168539760 + (TG)n Simple_repeat Simple_repeat 1 35 0 2077 174 51 9 chr3 58984879 58985000 -168539578 - L1MB5 LINE L1 -31 6143 6029 2405 112 22 25 chr3 58985000 58985365 -168539213 + THE1B LTR MaLR 1 364 0 2077 174 51 9 chr3 58985365 58985674 -168538904 - L1MB5 LINE L1 -145 6029 5695 591 208 0 25 chr3 58985676 58985796 -168538782 - L1MB5 LINE L1 -613 5567 5451 195 42 0 0 chr3 58986228 58986252 -168538326 + (TCTCTG)n Simple_repeat Simple_repeat 4 27 0 732 216 226 35 chr3 58986638 58986925 -168537653 + MLT1K LTR MaLR 201 542 -46 444 267 59 7 chr3 58987245 58987380 -168537198 - MER5A DNA MER1_type -47 142 1 757 245 98 52 chr3 58987398 58987724 -168536854 - MLT1J LTR MaLR -8 503 163 259 252 49 16 chr3 58987725 58987848 -168536730 + L1MC/D LINE L1 4478 4604 -1542 714 294 20 29 chr3 58988091 58988336 -168536242 + HAL1 LINE L1 386 628 -1879 387 279 25 80 chr3 58988381 58988464 -168536114 + HAL1 LINE L1 882 968 -1539 2098 119 0 3 chr3 58988464 58988749 -168535829 + AluSx SINE Alu 1 284 -28 396 0 0 0 chr3 58988749 58988793 -168535785 + (CA)n Simple_repeat Simple_repeat 2 45 0 387 279 25 80 chr3 58988793 58988909 -168535669 + HAL1 LINE L1 966 1071 -1436 375 309 59 7 chr3 58988944 58989096 -168535482 - MLT1H LTR MaLR -313 236 77 904 226 47 57 chr3 58989098 58989416 -168535162 + HAL1 LINE L1 1158 1472 -1035 2210 103 79 69 chr3 58989436 58989854 -168534724 - MSTA LTR MaLR 0 428 7 1203 181 35 40 chr3 58989898 58990125 -168534453 + AluJb SINE Alu 87 312 0 465 252 0 0 chr3 58990164 58990275 -168534303 + MLT2E LTR ERVL 513 623 -5 385 289 23 16 chr3 58990276 58990404 -168534174 + HAL1 LINE L1 1744 1872 -635 322 312 21 43 chr3 58990487 58990673 -168533905 + HAL1 LINE L1 2030 2211 -296 4124 160 37 3 chr3 58990850 58991612 -168532966 - L1P LINE L1 -2075 4071 3284 322 292 79 42 chr3 58991638 58991854 -168532724 + L1MC/D LINE L1 5009 5232 -914 993 220 133 0 chr3 58994261 58994547 -168530031 - MER5C DNA MER1_type 0 324 1 1008 190 17 47 chr3 58994647 58994879 -168529699 + MER21B LTR ERV1 598 822 -41 395 174 109 0 chr3 58994920 58995012 -168529566 + L1MC/D LINE L1 5718 5819 -540 417 263 19 19 chr3 58995012 58995168 -168529410 - LTR23 LTR ERV1 0 437 282 1870 277 77 93 chr3 58995170 58996146 -168528432 - L1ME LINE L1 -3920 2198 1208 1923 162 26 16 chr3 58996146 58996455 -168528123 - AluJb SINE Alu 0 312 1 1870 277 77 93 chr3 58996455 58997678 -168526900 - L1ME LINE L1 -4910 1208 43 290 222 86 0 chr3 58997804 58997885 -168526693 - L1MC5 LINE L1 -54 7907 7820 386 218 30 55 chr3 58997933 58998098 -168526480 - L1MC5 LINE L1 -786 7175 7015 28 0 0 0 chr3 58998147 58998175 -168526403 + AT_rich Low_complexity Low_complexity 1 28 0 810 300 52 13 chr3 58998185 58998499 -168526079 - L1MC4 LINE L1 -806 7084 6644 2220 104 0 7 chr3 58998499 58998823 -168525755 - AluSg SINE Alu 0 310 1 810 300 52 13 chr3 58998823 58998991 -168525587 - L1MC4 LINE L1 -1246 6644 6484 1048 252 77 73 chr3 58999036 58999516 -168525062 - LTR16C LTR ERVL -5 486 5 302 164 14 55 chr3 58999701 58999774 -168524804 + AluJ/FRAM SINE Alu 232 301 -1 483 320 31 23 chr3 58999887 59000143 -168524435 - ERVL LTR ERVL -1167 4597 4340 * 838 328 67 55 chr3 59000140 59000431 -168524147 + HERV16 LTR ERVL 1026 1312 -3684 2014 159 0 6 chr3 59000431 59000745 -168523833 + AluSx SINE Alu 1 312 0 838 328 67 55 chr3 59000745 59001279 -168523299 + HERV16 LTR ERVL 1312 1861 -3135 1551 296 112 20 chr3 59001318 59002110 -168522468 + HERV16 LTR ERVL 1949 2813 -2841 3315 200 66 39 chr3 59002219 59002513 -168522065 + L1ME2 LINE L1 4811 5096 -1068 1929 139 3 24 chr3 59002513 59002808 -168521770 + AluJb SINE Alu 2 290 -22 3315 200 66 39 chr3 59002808 59002865 -168521713 + L1ME2 LINE L1 5096 5150 -1014 2645 64 0 0 chr3 59002865 59003176 -168521402 + AluY SINE Alu 1 311 0 3315 200 66 39 chr3 59003176 59003907 -168520671 + L1ME2 LINE L1 5150 5860 -304 1609 153 24 64 chr3 59003907 59004043 -168520535 + AluJb SINE Alu 9 149 -163 2155 127 7 7 chr3 59004043 59004343 -168520235 + AluSq SINE Alu 5 304 -9 1609 153 24 64 chr3 59004343 59004501 -168520077 + AluJb SINE Alu 149 291 -21 3315 200 66 39 chr3 59004501 59004540 -168520038 + L1ME2 LINE L1 5860 5896 -268 2344 81 3 29 chr3 59004540 59004848 -168519730 + AluSp SINE Alu 1 300 -13 3315 200 66 39 chr3 59004848 59005030 -168519548 + L1ME2 LINE L1 5896 6151 -13 435 254 194 5 chr3 59005036 59005237 -168519341 + L1MEc LINE L1 1623 1861 -4535 335 282 73 16 chr3 59005239 59005353 -168519225 + L1ME LINE L1 7 130 -5940 2430 87 7 0 chr3 59005353 59005663 -168518915 + AluSp SINE Alu 1 312 -1 264 222 139 83 chr3 59006012 59006242 -168518336 + L1ME LINE L1 184 426 -5644 3566 106 57 35 chr3 59006244 59006839 -168517739 + MER4B LTR ERV1 3 610 0 3587 225 55 102 chr3 59006915 59007241 -168517337 + L1ME LINE L1 448 788 -5292 2270 116 0 7 chr3 59007241 59007544 -168517034 - AluSq SINE Alu -12 301 1 3587 225 55 102 chr3 59007544 59007708 -168516870 + L1ME LINE L1 788 958 -5122 2420 57 3 23 chr3 59007708 59008008 -168516570 + AluY SINE Alu 2 295 -16 3587 225 55 102 chr3 59008008 59008393 -168516185 + L1ME LINE L1 958 1360 -4720 186 43 0 0 chr3 59008393 59008416 -168516162 + (GAAA)n Simple_repeat Simple_repeat 2 24 0 3587 225 55 102 chr3 59008416 59009350 -168515228 + L1ME LINE L1 1360 2217 -3863 905 249 106 0 chr3 59009394 59009639 -168514939 + L1ME1 LINE L1 352 622 -6123 * 1863 218 43 37 chr3 59009629 59010139 -168514439 + L1ME1 LINE L1 5766 6278 -306 2346 67 0 27 chr3 59010167 59010467 -168514111 + AluSc SINE Alu 1 292 -17 1858 53 40 0 chr3 59010537 59010762 -168513816 - AluY SINE Alu -77 234 1 1937 106 35 32 chr3 59010762 59010829 -168513749 - L1MA4 LINE L1 -118 6182 6117 2263 109 0 10 chr3 59010829 59011132 -168513446 - AluSx SINE Alu -12 300 1 1937 106 35 32 chr3 59011132 59011412 -168513166 - L1MA4 LINE L1 -183 6117 5834 770 117 0 0 chr3 59011412 59011527 -168513051 + L1MA4 LINE L1 6176 6295 -5 440 207 0 110 chr3 59011531 59011695 -168512883 + L1ME1 LINE L1 6316 6461 -123 1437 178 82 11 chr3 59011711 59011992 -168512586 + AluJb SINE Alu 1 301 -11 3048 168 57 49 chr3 59011993 59012087 -168512491 + L1MD2 LINE L1 848 940 -5624 1897 164 17 3 chr3 59012087 59012385 -168512193 - AluJo SINE Alu -10 302 1 3048 168 57 49 chr3 59012385 59013155 -168511423 + L1MD2 LINE L1 940 1746 -4818 277 108 0 0 chr3 59013160 59013197 -168511381 - Alu SINE Alu -260 42 6 1512 176 71 20 chr3 59013199 59013494 -168511084 + AluJo SINE Alu 1 310 -2 4513 218 70 42 chr3 59013494 59013902 -168510676 + L1MD2 LINE L1 3896 4291 -2486 2109 118 4 0 chr3 59013902 59014210 -168510368 + AluSx SINE Alu 1 309 0 4513 218 70 42 chr3 59014210 59014223 -168510355 + L1MD2 LINE L1 4291 4302 -2475 2328 113 7 0 chr3 59014223 59014525 -168510053 + AluSx SINE Alu 1 304 -8 4513 218 70 42 chr3 59014525 59014588 -168509990 + L1MD2 LINE L1 4302 4362 -2415 2364 91 3 0 chr3 59014588 59014885 -168509693 + AluSg1 SINE Alu 1 298 -11 4513 218 70 42 chr3 59014885 59016045 -168508533 + L1MD2 LINE L1 4362 5488 -1289 2334 88 20 0 chr3 59016045 59016340 -168508238 + AluSp SINE Alu 1 301 -12 4513 218 70 42 chr3 59016340 59017069 -168507509 + L1MD2 LINE L1 5488 6343 -434 2469 66 0 3 chr3 59017069 59017371 -168507207 - AluY SINE Alu -10 301 1 4513 218 70 42 chr3 59017371 59017394 -168507184 + L1MD2 LINE L1 6343 6364 -413 2943 219 81 20 chr3 59017386 59017763 -168506815 + L1ME1 LINE L1 5296 5649 -517 * 2143 103 31 3 chr3 59017763 59018053 -168506525 - AluSg SINE Alu -9 301 4 2943 219 81 20 chr3 59018053 59018482 -168506096 + L1ME1 LINE L1 5649 6151 -15 2412 99 3 0 chr3 59018559 59018862 -168505716 - AluSp SINE Alu -8 305 2 342 326 169 6 chr3 59019711 59019883 -168504695 + L2 LINE L2 3073 3272 0 341 271 288 14 chr3 59020316 59020597 -168503981 + L2 LINE L2 2920 3277 -36 348 164 0 29 chr3 59020609 59020713 -168503865 + (TGGA)n Simple_repeat Simple_repeat 1 101 0 1982 160 0 0 chr3 59021093 59021387 -168503191 + AluSx SINE Alu 1 294 -18 1003 236 197 28 chr3 59021558 59021897 -168502681 + MLT1H LTR MaLR 51 478 -71 2367 92 3 32 chr3 59021897 59022212 -168502366 + AluSp SINE Alu 1 306 -7 1003 236 197 28 chr3 59022212 59022299 -168502279 + MLT1H LTR MaLR 478 549 0 226 308 77 10 chr3 59022333 59022437 -168502141 - L2 LINE L2 -2913 401 291 2390 96 0 0 chr3 59022714 59023006 -168501572 + AluSq SINE Alu 1 292 -21 362 290 77 12 chr3 59024295 59024464 -168500114 + MIR SINE MIR 8 187 -75 1031 66 0 7 chr3 59025290 59025427 -168499151 + L1MA2 LINE L1 6165 6300 -4 940 195 6 0 chr3 59026312 59026481 -168498097 - FRAM SINE Alu -6 170 1 199 189 27 0 chr3 59027165 59027202 -168497376 + MIR SINE MIR 116 153 -109 289 320 128 0 chr3 59027351 59027476 -168497102 - L3 LINE CR1 -13 1564 1424 195 69 0 0 chr3 59028613 59028642 -168495936 + (TCC)n Simple_repeat Simple_repeat 2 30 0 903 261 99 39 chr3 59028799 59029286 -168495292 + HAL1 LINE L1 1309 1824 -683 931 235 81 0 chr3 59029884 59030131 -168494447 + L1ME1 LINE L1 5898 6164 -2 2343 104 3 0 chr3 59030431 59030729 -168493849 + AluSx SINE Alu 1 299 -13 1753 166 28 0 chr3 59030985 59031269 -168493309 - AluJo SINE Alu -20 292 1 952 165 51 0 chr3 59037068 59037226 -168487352 + FRAM SINE Alu 1 165 -11 321 331 50 0 chr3 59038511 59038650 -168485928 - L2 LINE L2 -210 3062 2917 2688 148 24 2 chr3 59039026 59039519 -168485059 - L1MA8 LINE L1 -172 6119 5616 2010 154 0 3 chr3 59040110 59040422 -168484156 - AluJb SINE Alu -1 311 1 2761 202 141 36 chr3 59040584 59041469 -168483109 - L1MC4a LINE L1 -222 7586 6609 948 208 0 0 chr3 59041470 59041643 -168482935 + FRAM SINE Alu 1 171 -5 1105 238 87 43 chr3 59041655 59042248 -168482330 - L1MC4a LINE L1 -1189 6619 5974 24 0 0 0 chr3 59042314 59042338 -168482240 + AT_rich Low_complexity Low_complexity 1 24 0 203 273 136 11 chr3 59042615 59042703 -168481875 + MIR3 SINE MIR 76 174 -34 1163 279 122 60 chr3 59042779 59042993 -168481585 - L2 LINE L2 -49 3264 3065 2386 55 0 35 chr3 59042993 59043305 -168481273 + AluY SINE Alu 1 301 -10 2219 81 7 13 chr3 59043305 59043603 -168480975 + AluY SINE Alu 1 296 -15 1163 279 122 60 chr3 59043603 59044002 -168480576 - L2 LINE L2 -248 3065 2692 1346 262 198 5 chr3 59044002 59044437 -168480141 - LTR33A LTR ERVL -4 519 1 1163 279 122 60 chr3 59044437 59044853 -168479725 - L2 LINE L2 -621 2692 2176 1126 141 24 0 chr3 59045046 59045216 -168479362 + AluJb SINE Alu 134 307 -5 206 225 0 0 chr3 59045367 59045407 -168479171 - L2 LINE L2 -16 3297 3258 266 301 192 20 chr3 59047341 59047487 -168477091 + MIR3 SINE MIR 27 197 -11 201 233 0 0 chr3 59051557 59051600 -168472978 + (CAGCC)n Simple_repeat Simple_repeat 4 46 0 406 281 50 29 chr3 59051922 59052061 -168472517 + MIR SINE MIR 73 214 -48 281 301 97 0 chr3 59052570 59052673 -168471905 + MIR SINE MIR 39 151 -111 221 347 32 0 chr3 59053511 59053606 -168470972 + L2 LINE L2 3159 3256 -16 255 205 64 0 chr3 59053659 59053737 -168470841 - MIR SINE MIR -70 138 56 311 299 163 5 chr3 59055630 59055851 -168468727 + L2 LINE L2 2722 2977 -337 210 254 93 51 chr3 59056448 59056566 -168468012 - MIR3 SINE MIR -72 136 14 26 30 0 0 chr3 59057746 59057779 -168466799 + GC_rich Low_complexity Low_complexity 1 33 0 191 36 36 0 chr3 59057799 59057827 -168466751 + (CGG)n Simple_repeat Simple_repeat 3 31 0 198 250 0 28 chr3 59057939 59058011 -168466567 + (CCCCG)n Simple_repeat Simple_repeat 5 74 0 41 72 0 0 chr3 59058032 59058115 -168466463 + GC_rich Low_complexity Low_complexity 1 83 0 269 255 16 38 chr3 59058201 59058385 -168466193 + (CCCCG)n Simple_repeat Simple_repeat 1 180 0 650 239 30 41 chr3 59060871 59061068 -168463510 + MIR SINE MIR 2 196 -66 399 281 55 43 chr3 59061537 59061701 -168462877 - MIR SINE MIR -13 249 84 268 246 223 23 chr3 59062268 59062398 -168462180 + MIR SINE MIR 18 173 -89 2173 82 34 7 chr3 59062431 59062725 -168461853 + AluSx SINE Alu 1 302 -10 2066 114 3 13 chr3 59062756 59063064 -168461514 + AluSp SINE Alu 1 305 -8 385 186 133 18 chr3 59063141 59063254 -168461324 + MIR SINE MIR 120 245 -17 2116 92 0 14 chr3 59063330 59063513 -168461065 - AluSq SINE Alu 0 316 137 2345 43 7 20 chr3 59063513 59063817 -168460761 - AluY SINE Alu -11 300 1 2116 92 0 14 chr3 59063817 59063948 -168460630 - AluSq SINE Alu -179 137 6 1013 113 19 6 chr3 59063973 59064132 -168460446 - FRAM SINE Alu 0 40 1 220 346 83 13 chr3 59064830 59064986 -168459592 + MIR SINE MIR 24 190 -72 372 303 59 26 chr3 59065216 59065368 -168459210 - MIR SINE MIR 0 262 106 203 306 10 20 chr3 59065793 59065891 -168458687 + (TG)n Simple_repeat Simple_repeat 2 98 0 291 307 8 0 chr3 59065980 59066107 -168458471 + (TG)n Simple_repeat Simple_repeat 2 129 0 2267 79 3 3 chr3 59066862 59067166 -168457412 + AluSg SINE Alu 1 304 -6 189 244 110 24 chr3 59067253 59067335 -168457243 - MIR SINE MIR -71 191 103 469 332 127 0 chr3 59067836 59068056 -168456522 + MIR SINE MIR 3 250 -12 2240 107 0 16 chr3 59069042 59069359 -168455219 - AluSx SINE Alu 0 312 1 395 306 79 65 chr3 59069652 59069941 -168454637 - L1MC4a LINE L1 -504 5617 5611 2372 78 3 0 chr3 59069941 59070249 -168454329 - AluSg SINE Alu -1 309 1 395 306 79 65 chr3 59070249 59070385 -168454193 - L1MC4a LINE L1 -510 5611 5478 2164 68 7 4 chr3 59070385 59070689 -168453889 - AluY SINE Alu 0 305 1 415 246 136 0 chr3 59071783 59071893 -168452685 + MIR SINE MIR 69 193 -69 2431 53 0 31 chr3 59072071 59072392 -168452186 + AluY SINE Alu 1 311 0 2095 106 3 0 chr3 59072411 59072703 -168451875 + AluSx SINE Alu 1 293 -19 24 53 0 0 chr3 59073746 59073784 -168450794 + GC_rich Low_complexity Low_complexity 1 38 0 195 170 0 0 chr3 59074131 59074178 -168450400 + T-rich Low_complexity Low_complexity 1 47 0 518 241 155 29 chr3 59074189 59074385 -168450193 + MIR SINE MIR 35 247 -15 1929 149 7 7 chr3 59075010 59075312 -168449266 + AluJb SINE Alu 11 312 0 293 327 28 0 chr3 59075326 59075444 -168449134 + MIR SINE MIR 31 151 -69 221 365 32 0 chr3 59076522 59076660 -168447918 - MIR SINE MIR -65 143 30 278 301 68 8 chr3 59077153 59077286 -168447292 - MIR3 SINE MIR -63 145 5 267 263 117 130 chr3 59078217 59078351 -168446227 - L2 LINE L2 -5 3267 3133 1989 110 28 0 chr3 59078351 59078633 -168445945 - AluSx SINE Alu -22 290 1 267 263 117 130 chr3 59078633 59078814 -168445764 - L2 LINE L2 -139 3133 2956 316 301 0 29 chr3 59079105 59079208 -168445370 + C-rich Low_complexity Low_complexity 3 102 0 247 159 0 23 chr3 59079697 59079741 -168444837 - MIR SINE MIR -101 161 119 1688 123 77 7 chr3 59080454 59080739 -168443839 - AluY SINE Alu -6 305 1 759 83 18 18 chr3 59080739 59080842 -168443736 - AluSc SINE Alu -176 133 31 4292 128 53 53 chr3 59080842 59082082 -168442496 + pTR5 LTR ERV1 743 2292 -146 258 0 0 0 chr3 59082094 59082128 -168442450 - AluSc SINE Alu -274 34 1 1704 161 41 7 chr3 59082214 59082506 -168442072 + AluSx SINE Alu 1 302 -10 205 277 0 0 chr3 59083051 59083098 -168441480 + MIR SINE MIR 124 170 -92 2312 80 0 13 chr3 59083572 59083874 -168440704 + AluY SINE Alu 1 298 -13 280 331 21 21 chr3 59286319 59286464 -168238114 + L2 LINE L2 2919 3063 -209 235 208 0 0 chr3 59286502 59286550 -168238028 + L2 LINE L2 3223 3270 -2 1877 112 12 59 chr3 59286824 59286999 -168237579 - AluSx SINE Alu -6 306 151 2267 76 0 13 chr3 59286999 59287301 -168237277 - AluY SINE Alu -2 309 12 1877 112 12 59 chr3 59287301 59287446 -168237132 - AluSx SINE Alu -161 151 1 6707 113 34 57 chr3 59287449 59288496 -168236082 + MER4-int LTR ERV1 5353 6423 -175 194 54 0 54 chr3 59288496 59288533 -168236045 + (TTG)n Simple_repeat Simple_repeat 2 36 0 6707 113 34 57 chr3 59288533 59288703 -168235875 + MER4-int LTR ERV1 6423 6541 -57 2101 112 13 13 chr3 59288703 59289015 -168235563 - AluSx SINE Alu 0 312 1 6707 113 34 57 chr3 59289015 59289071 -168235507 + MER4-int LTR ERV1 6541 6597 -1 1831 147 62 16 chr3 59289094 59289414 -168235164 + MER4A LTR ERV1 286 620 -44 1808 106 4 8 chr3 59289414 59289669 -168234909 - AluSq SINE Alu -14 299 46 948 246 57 57 chr3 59289676 59290026 -168234552 + LTR9 LTR ERV1 263 612 0 2298 103 3 3 chr3 59290026 59290347 -168234231 + MER4B-int LTR ERV1 5988 6308 -450 1518 122 0 0 chr3 59290347 59290568 -168234010 - AluSg/x SINE Alu -11 301 81 251 327 192 0 chr3 59290856 59291012 -168233566 + L2 LINE L2 3025 3210 -62 408 253 0 0 chr3 59291226 59291317 -168233261 + L1ME LINE L1 5570 5660 -461 1554 197 3 16 chr3 59292052 59292198 -168232380 + AluJo SINE Alu 1 147 -165 2200 101 7 0 chr3 59292198 59292496 -168232082 + AluSc SINE Alu 1 300 -9 1554 197 3 16 chr3 59292496 59292654 -168231924 + AluJo SINE Alu 147 301 -11 310 288 158 14 chr3 59292850 59292996 -168231582 - MIR SINE MIR -18 244 78 409 261 18 9 chr3 59293692 59293803 -168230775 + MIR3 SINE MIR 48 159 -49 243 208 0 0 chr3 59294030 59294078 -168230500 - MIR SINE MIR -112 150 103 1585 154 34 24 chr3 59294574 59294867 -168229711 - AluJo SINE Alu -12 300 5 418 262 37 55 chr3 59295166 59295330 -168229248 + MIR SINE MIR 80 240 -22 308 258 129 0 chr3 59296594 59296687 -168227891 + MIR SINE MIR 42 146 -62 183 167 0 0 chr3 59296871 59296901 -168227677 + MIR SINE MIR 113 142 -66 2248 65 0 14 chr3 59298065 59298527 -168226051 + AluY SINE Alu 3 460 0 2196 107 3 3 chr3 59298812 59299121 -168225457 - AluSx SINE Alu -3 309 1 189 0 0 0 chr3 59299195 59299216 -168225362 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 432 0 0 0 chr3 59299534 59299582 -168224996 + (TA)n Simple_repeat Simple_repeat 2 49 0 2019 139 3 0 chr3 59299582 59299885 -168224693 - AluSx SINE Alu -8 304 1 329 329 79 58 chr3 59299887 59300230 -168224348 - L2 LINE L2 -12 3260 2911 247 345 0 18 chr3 59300547 59300657 -168223921 + L2 LINE L2 3163 3270 -2 240 249 65 95 chr3 59301017 59301186 -168223392 + L3 LINE CR1 1313 1476 -101 3306 139 42 58 chr3 59301590 59301633 -168222945 - MER4B-int LTR ERV1 -1282 4664 4622 2298 84 3 0 chr3 59301633 59301929 -168222649 - AluSp SINE Alu -16 297 1 2303 94 0 0 chr3 59301929 59302226 -168222352 - AluSx SINE Alu -13 299 1 3306 139 42 58 chr3 59302226 59302584 -168221994 - MER4B-int LTR ERV1 -1323 4623 4261 2162 122 0 0 chr3 59302584 59302887 -168221691 - AluSq SINE Alu -10 303 1 3306 139 42 58 chr3 59302887 59303168 -168221410 - MER4B-int LTR ERV1 -1685 4261 3989 6469 116 160 34 chr3 59303168 59304174 -168220404 + MER52C LTR ERV1 1 1168 -110 2041 109 4 0 chr3 59304174 59304481 -168220097 + AluSq SINE Alu 6 313 0 6469 116 160 34 chr3 59304481 59304606 -168219972 + MER52C LTR ERV1 1168 1276 -2 3306 139 42 58 chr3 59304606 59304651 -168219927 - MER4B-int LTR ERV1 -1957 3989 3945 2047 126 7 3 chr3 59304653 59304954 -168219624 + AluSx SINE Alu 1 302 -10 7205 133 107 119 chr3 59304961 59305238 -168219340 - MER4B-int LTR ERV1 -4447 2151 1872 2235 108 0 0 chr3 59305238 59305545 -168219033 + AluSc SINE Alu 1 307 -2 7205 133 107 119 chr3 59305545 59305636 -168218942 - MER4B-int LTR ERV1 -4726 1872 1781 1781 124 75 7 chr3 59305636 59305918 -168218660 + AluSx SINE Alu 1 301 -11 7205 133 107 119 chr3 59305918 59306562 -168218016 - MER4B-int LTR ERV1 -4817 1781 1130 2236 112 0 0 chr3 59306562 59306866 -168217712 + AluSx SINE Alu 1 304 -8 2449 62 0 0 chr3 59306866 59307171 -168217407 + AluY SINE Alu 1 305 -6 2083 107 9 38 chr3 59307171 59307301 -168217277 + AluSx SINE Alu 3 135 -177 2258 105 0 6 chr3 59307301 59307615 -168216963 + AluSp SINE Alu 1 312 -1 2083 107 9 38 chr3 59307615 59307803 -168216775 + AluSx SINE Alu 135 312 0 7205 133 107 119 chr3 59307803 59307823 -168216755 - MER4B-int LTR ERV1 -5466 1132 1113 2113 128 0 3 chr3 59307823 59308136 -168216442 + AluSx SINE Alu 1 312 0 7205 133 107 119 chr3 59308136 59308588 -168215990 - MER4B-int LTR ERV1 -5485 1113 657 2121 91 30 3 chr3 59308588 59308884 -168215694 - AluSx SINE Alu -6 306 3 7205 133 107 119 chr3 59308884 59309083 -168215495 - MER4B-int LTR ERV1 -5941 657 457 2349 64 3 3 chr3 59309083 59309394 -168215184 - AluY SINE Alu 0 311 1 7205 133 107 119 chr3 59309394 59309882 -168214696 - MER4B-int LTR ERV1 -6141 457 1 3629 107 60 7 chr3 59309885 59310456 -168214122 - MER4B LTR ERV1 0 610 10 2077 88 0 27 chr3 59310469 59310765 -168213813 - AluSx SINE Alu -24 288 1 410 301 18 0 chr3 59310840 59310953 -168213625 - MIR SINE MIR -58 150 36 303 79 0 0 chr3 59311197 59311235 -168213343 - AluSp/q SINE Alu -34 269 232 278 232 162 0 chr3 59311839 59311938 -168212640 - L2 LINE L2 -19 3294 3180 3062 139 33 69 chr3 59312841 59313411 -168211167 - L1MB7 LINE L1 -13 6171 5582 221 0 65 43 chr3 59313411 59313457 -168211121 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 2081 101 0 0 chr3 59313465 59313742 -168210836 - AluSx SINE Alu -35 277 1 1683 172 3 7 chr3 59313748 59314038 -168210540 - AluJo SINE Alu -23 289 1 3062 139 33 69 chr3 59314038 59314086 -168210492 - L1MB7 LINE L1 -614 5570 5560 227 31 31 0 chr3 59314086 59314118 -168210460 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 1047 224 7 26 chr3 59314121 59314393 -168210185 - L1M4 LINE L1 -1455 4691 4425 1343 90 0 0 chr3 59314393 59314571 -168210007 - AluY SINE Alu -4 307 130 351 223 143 7 chr3 59314572 59314724 -168209854 - L1M4 LINE L1 -1731 4415 4243 231 132 0 0 chr3 59314783 59314821 -168209757 - L1M4 LINE L1 -1893 4253 4216 270 253 105 0 chr3 59315184 59315279 -168209299 - MIR SINE MIR -62 146 42 463 230 20 80 chr3 59316865 59317027 -168207551 + MIR SINE MIR 50 202 -60 469 259 49 16 chr3 59317128 59317305 -168207273 - MIR SINE MIR -38 224 39 1641 155 47 7 chr3 59318286 59318407 -168206171 + AluJo SINE Alu 1 116 -196 207 0 0 0 chr3 59318407 59318430 -168206148 + (TAAAA)n Simple_repeat Simple_repeat 4 26 0 1641 155 47 7 chr3 59318430 59318605 -168205973 + AluJo SINE Alu 116 309 -3 305 271 157 7 chr3 59321310 59321450 -168203128 + MIR SINE MIR 74 234 -28 219 305 68 8 chr3 59321897 59322015 -168202563 + MIR SINE MIR 125 249 -13 926 115 0 43 chr3 59324184 59324323 -168200255 - FLAM_C SINE Alu 0 133 1 270 305 63 65 chr3 59326797 59326902 -168197676 - MIR SINE MIR -60 202 97 2019 123 7 0 chr3 59326902 59327186 -168197392 + AluSx SINE Alu 5 290 -22 270 305 63 65 chr3 59327186 59327269 -168197309 - MIR SINE MIR -165 97 15 833 194 6 24 chr3 59330474 59330639 -168193939 + AluJb SINE Alu 132 293 -19 2155 111 7 0 chr3 59331374 59331680 -168192898 - AluSx SINE Alu -4 308 1 334 221 58 0 chr3 59331704 59331790 -168192788 - L1MB4 LINE L1 -1 6179 6089 366 176 77 0 chr3 59331804 59331895 -168192683 - L1MA4 LINE L1 -281 6019 5922 1264 170 33 118 chr3 59332618 59332960 -168191618 - MLT1A1 LTR MaLR 0 365 60 2264 101 0 3 chr3 59332960 59333267 -168191311 - AluSx SINE Alu -6 306 1 1264 170 33 118 chr3 59333267 59333323 -168191255 - MLT1A1 LTR MaLR -305 60 1 224 261 80 23 chr3 59333783 59333871 -168190707 + MIR SINE MIR 48 140 -122 285 283 66 0 chr3 59334605 59334711 -168189867 - MIR3 SINE MIR -3 205 93 2183 118 3 0 chr3 59336726 59337030 -168187548 - AluSx SINE Alu -7 305 1 440 304 42 21 chr3 59337030 59337268 -168187310 + L1M4 LINE L1 2857 3087 -3059 2113 132 0 0 chr3 59338032 59338328 -168186250 + AluSx SINE Alu 1 296 -16 2292 84 0 10 chr3 59338335 59338633 -168185945 + AluY SINE Alu 1 295 -16 1965 191 45 5 chr3 59339068 59339446 -168185132 + MSTD LTR MaLR 4 396 0 270 264 61 98 chr3 59341244 59341407 -168183171 - MIR SINE MIR -1 261 105 464 291 120 0 chr3 59342855 59343013 -168181565 - MIR SINE MIR -15 247 71 310 314 192 23 chr3 59343054 59343315 -168181263 - L2 LINE L2 -83 3230 2926 204 301 32 32 chr3 59344377 59344470 -168180108 - MIR SINE MIR -79 129 37 211 391 62 0 chr3 59344821 59344949 -168179629 - MIR SINE MIR -14 248 113 795 138 28 21 chr3 59345749 59345894 -168178684 - L1MB4 LINE L1 -2 6178 6033 1370 121 0 84 chr3 59346156 59346332 -168178246 - MER20 DNA MER1_type 0 219 67 1891 176 0 3 chr3 59346332 59346634 -168177944 + AluJo SINE Alu 1 301 -11 1370 121 0 84 chr3 59346634 59346696 -168177882 - MER20 DNA MER1_type -152 67 1 319 344 156 5 chr3 59348455 59348667 -168175911 + MIR SINE MIR 14 257 -5 1777 169 0 17 chr3 59348667 59348824 -168175754 - AluJo SINE Alu -22 290 139 2113 128 0 0 chr3 59348824 59349122 -168175456 - AluSx SINE Alu -14 298 1 1777 169 0 17 chr3 59349122 59349259 -168175319 - AluJo SINE Alu -173 139 1 826 154 7 27 chr3 59349992 59350141 -168174437 - L1PB4 LINE L1 0 6156 6011 2006 132 17 6 chr3 59350149 59350504 -168174074 - MLT1A1 LTR MaLR 0 365 7 2100 100 17 0 chr3 59350985 59351284 -168173294 - AluSp SINE Alu -9 304 1 1864 174 0 3 chr3 59351287 59351592 -168172986 - AluSx SINE Alu -4 308 5 433 182 159 0 chr3 59351732 59351820 -168172758 + FLAM_A SINE Alu 14 115 -27 2112 118 10 0 chr3 59351825 59352121 -168172457 - AluSg SINE Alu -11 299 1 1762 155 45 0 chr3 59352191 59352482 -168172096 + AluJb SINE Alu 1 304 -8 1916 142 3 23 chr3 59352488 59352790 -168171788 + AluSx SINE Alu 7 302 -10 225 243 0 39 chr3 59357796 59357899 -168166679 + G-rich Low_complexity Low_complexity 6 104 0 287 311 4 0 chr3 59357977 59358091 -168166487 - MIR SINE MIR -62 146 73 2063 95 28 0 chr3 59358729 59359013 -168165565 + AluSx SINE Alu 1 292 -20 420 246 27 0 chr3 59359966 59360076 -168164502 - HAL1 LINE L1 -741 1766 1654 1238 141 0 0 chr3 59360149 59360340 -168164238 - AluSp SINE Alu -2 311 121 371 312 35 52 chr3 59360341 59360514 -168164064 - L1M4 LINE L1 -852 5294 5125 368 147 30 19 chr3 59360515 59360607 -168163971 + LTR24B LTR ERV1 3 95 -370 2364 75 0 0 chr3 59360607 59360902 -168163676 - AluSx SINE Alu 0 312 18 240 146 0 6 chr3 59360950 59361006 -168163572 - AluSx SINE Alu -263 37 1 2411 181 47 74 chr3 59361065 59361699 -168162879 + LTR34 LTR ERV1 79 695 -4 1369 208 32 32 chr3 59361816 59361996 -168162582 - AluJo SINE Alu -4 308 126 225 65 0 0 chr3 59361996 59362027 -168162551 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 1369 208 32 32 chr3 59362027 59362154 -168162424 - AluJo SINE Alu -185 127 1 902 147 0 22 chr3 59362169 59362305 -168162273 - FLAM_C SINE Alu 0 133 1 480 254 62 0 chr3 59362333 59362463 -168162115 + MIR SINE MIR 56 193 -69 323 279 253 13 chr3 59362517 59362671 -168161907 - L2 LINE L2 0 3313 3123 387 276 24 0 chr3 59363238 59363365 -168161213 - MLT1K LTR MaLR -275 313 184 262 208 13 26 chr3 59363460 59363537 -168161041 + L2 LINE L2 2896 2971 -301 2200 82 27 0 chr3 59363553 59363847 -168160731 + AluSp SINE Alu 12 313 0 279 265 247 19 chr3 59366544 59366706 -168157872 - MIR SINE MIR -1 261 63 2342 95 0 0 chr3 59367274 59367579 -168156999 - AluSq SINE Alu -8 305 1 216 0 0 0 chr3 59368033 59368057 -168156521 + (TG)n Simple_repeat Simple_repeat 1 24 0 2257 65 48 0 chr3 59369661 59369951 -168154627 - AluY SINE Alu -7 304 1 432 244 16 8 chr3 59370095 59370218 -168154360 - Charlie8 DNA MER1_type -2237 180 57 2248 62 24 3 chr3 59370570 59370862 -168153716 - AluSp SINE Alu -14 299 2 215 324 93 19 chr3 59374051 59374159 -168150419 - MIR SINE MIR -75 133 18 1422 226 61 53 chr3 59375241 59375736 -168148842 - MLT1D LTR MaLR -10 488 1 963 282 123 29 chr3 59376503 59377236 -168147342 - L2 LINE L2 -8 3305 2500 2269 94 7 0 chr3 59378227 59378535 -168146043 - AluSp SINE Alu -3 310 1 226 296 11 23 chr3 59378683 59378771 -168145807 + L1M4b LINE L1 432 518 -6341 184 274 107 48 chr3 59382826 59382910 -168141668 + L2 LINE L2 3136 3224 -48 578 71 12 0 chr3 59383179 59383263 -168141315 + (TCCC)n Simple_repeat Simple_repeat 2 86 0 1791 180 26 3 chr3 59383275 59383580 -168140998 - AluJb SINE Alu 0 312 1 1756 133 51 17 chr3 59383580 59383873 -168140705 - AluJb SINE Alu -9 303 1 348 321 91 7 chr3 59384991 59385158 -168139420 + MIR SINE MIR 5 185 -68 2265 112 0 3 chr3 59385643 59385956 -168138622 - AluSx SINE Alu 0 312 1 576 355 116 20 chr3 59386595 59386992 -168137586 - L2 LINE L2 -1 3312 2878 2145 100 3 17 chr3 59387065 59387365 -168137213 - AluSx SINE Alu -16 296 1 1664 149 4 8 chr3 59387370 59387638 -168136940 - AluJo SINE Alu -25 287 21 314 311 240 29 chr3 59387681 59388907 -168135671 - L2 LINE L2 -531 2783 1154 857 218 18 0 chr3 59389067 59389232 -168135346 - FRAM SINE Alu -12 164 1 2829 151 44 13 chr3 59389612 59390137 -168134441 + L1MB7 LINE L1 5644 6184 0 2296 93 3 3 chr3 59390765 59391077 -168133501 + AluSp SINE Alu 1 312 -1 2309 119 33 6 chr3 59392447 59392784 -168131794 + MER7A DNA MER2_type 2 345 -1 1727 148 13 26 chr3 59392800 59393103 -168131475 - AluJo SINE Alu -13 299 1 192 336 37 47 chr3 59393104 59393211 -168131367 - MIR SINE MIR -63 145 40 1737 138 53 3 chr3 59393616 59393899 -168130679 + AluJb SINE Alu 1 297 -15 2364 88 0 0 chr3 59394089 59394396 -168130182 + AluY SINE Alu 1 307 -4 495 241 40 14 chr3 59394721 59394886 -168129692 - MIR SINE MIR -56 206 34 235 348 71 21 chr3 59394922 59395063 -168129515 - MIR SINE MIR -6 256 109 2321 98 33 16 chr3 59395755 59396121 -168128457 + L1PA15 LINE L1 5794 6165 0 2220 86 6 13 chr3 59396160 59396293 -168128285 + AluY SINE Alu 1 133 -178 2449 66 0 0 chr3 59396293 59396594 -168127984 + AluY SINE Alu 1 301 -10 2220 86 6 13 chr3 59396594 59396773 -168127805 + AluY SINE Alu 133 311 0 1612 175 13 26 chr3 59399196 59399499 -168125079 - AluJo SINE Alu -13 299 1 1997 149 0 0 chr3 59400035 59400337 -168124241 - AluSx SINE Alu -10 302 1 2024 127 0 0 chr3 59401220 59401528 -168123050 - AluSx SINE Alu 0 308 1 1555 182 13 26 chr3 59401820 59402122 -168122456 - AluJo SINE Alu -10 302 5 1600 133 8 0 chr3 59402899 59403140 -168121438 - AluSx SINE Alu -69 243 1 1642 126 60 4 chr3 59403168 59403437 -168121141 + L1MB3 LINE L1 5900 6183 0 2064 125 20 0 chr3 59403480 59403783 -168120795 + AluSx SINE Alu 1 309 -3 184 280 149 9 chr3 59403955 59404062 -168120516 + MIR SINE MIR 129 250 -12 191 261 22 0 chr3 59406106 59406152 -168118426 + MIR SINE MIR 216 262 0 207 261 54 65 chr3 59406767 59406859 -168117719 + MIR SINE MIR 86 176 -86 2042 104 40 0 chr3 59406863 59407161 -168117417 - AluSx SINE Alu -2 310 1 321 269 67 17 chr3 59407201 59407320 -168117258 + MIR SINE MIR 16 140 -68 189 229 292 0 chr3 59407809 59407905 -168116673 + MER5A DNA MER1_type 42 165 -24 245 348 142 0 chr3 59407955 59408081 -168116497 + MIR SINE MIR 22 166 -63 280 267 23 17 chr3 59408154 59408330 -168116248 + CT-rich Low_complexity Low_complexity 2 178 0 225 0 0 0 chr3 59408584 59408609 -168115969 + (TTTTTA)n Simple_repeat Simple_repeat 2 26 0 2096 100 4 0 chr3 59409530 59409920 -168114658 - AluSx SINE Alu 0 391 1 2495 68 0 0 chr3 59411229 59411539 -168113039 - AluY SINE Alu 0 311 2 329 322 0 8 chr3 59411544 59411662 -168112916 + Charlie8 DNA MER1_type 70 186 -2231 379 280 28 0 chr3 59411796 59411903 -168112675 - MIR SINE MIR -65 143 34 256 260 73 21 chr3 59412856 59412952 -168111626 - MIR SINE MIR -78 130 30 374 328 0 23 chr3 59413620 59413748 -168110830 + MIR SINE MIR 27 151 -111 364 131 16 0 chr3 59413764 59413824 -168110754 + MLT2C1 LTR ERVL 11 71 -393 323 73 0 0 chr3 59413824 59413865 -168110713 + Alu SINE Alu 1 41 -261 1492 106 22 13 chr3 59413865 59414123 -168110455 + AluSg/x SINE Alu 74 312 0 1615 192 34 3 chr3 59414124 59414447 -168110131 + MLT2C1 LTR ERVL 64 396 -1 188 301 68 0 chr3 59414530 59414603 -168109975 - MIR SINE MIR -108 154 77 240 293 65 83 chr3 59415021 59415206 -168109372 - Charlie8 DNA MER1_type -2103 314 132 1638 154 50 0 chr3 59415206 59415486 -168109092 - AluJb SINE Alu -18 294 1 240 293 65 83 chr3 59415486 59415529 -168109049 - Charlie8 DNA MER1_type -2285 132 90 332 263 204 5 chr3 59415759 59415931 -168108647 - L1MC4a LINE L1 -346 5824 5691 1533 116 0 13 chr3 59415977 59416201 -168108377 + AluSg/x SINE Alu 86 306 -6 2219 69 7 30 chr3 59416222 59416526 -168108052 - AluY SINE Alu -14 297 1 564 327 16 65 chr3 59416656 59416977 -168107601 - L2 LINE L2 -1 3271 2967 236 222 0 0 chr3 59417687 59417732 -168106846 + L2 LINE L2 3269 3313 0 210 171 0 24 chr3 59417738 59417779 -168106799 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 198 273 36 0 chr3 59419021 59419076 -168105502 + MIR SINE MIR 81 137 -71 2252 93 3 7 chr3 59420038 59420348 -168104230 + AluSx SINE Alu 1 309 -3 404 180 219 16 chr3 59420514 59420642 -168103936 - MER5A DNA MER1_type -35 154 1 507 199 69 8 chr3 59420643 59420774 -168103804 + L2 LINE L2 2667 2805 -509 182 273 18 0 chr3 59422041 59422096 -168102482 - MIR SINE MIR -6 256 201 390 184 0 11 chr3 59422126 59422213 -168102365 + MLT1C LTR MaLR 34 119 -348 5513 70 24 22 chr3 59422213 59422470 -168102108 - L1P LINE L1 -1635 4511 4256 2258 72 3 3 chr3 59422470 59422763 -168101815 - AluY SINE Alu -14 297 5 5513 70 24 22 chr3 59422763 59423328 -168101250 - L1P LINE L1 -1890 4256 3687 1585 64 59 0 chr3 59423328 59423547 -168101031 + L1P3 LINE L1 5446 5677 -477 1992 141 0 19 chr3 59423547 59423684 -168100894 + AluSx SINE Alu 1 139 -173 2184 105 3 7 chr3 59423684 59423990 -168100588 + AluSp SINE Alu 1 305 -8 1992 141 0 19 chr3 59423990 59424165 -168100413 + AluSx SINE Alu 139 307 -5 895 225 67 10 chr3 59424167 59424376 -168100202 + MLT1C LTR MaLR 213 433 -34 398 277 54 8 chr3 59424405 59424535 -168100043 - MIR3 SINE MIR -62 146 11 2057 119 0 7 chr3 59425302 59425604 -168098974 - AluSx SINE Alu -12 300 1 835 124 31 0 chr3 59425903 59426032 -168098546 - FRAM SINE Alu -3 173 41 799 265 84 20 chr3 59426385 59426746 -168097832 + LTR16C LTR ERVL 61 491 0 414 328 0 6 chr3 59426797 59426977 -168097601 + (CA)n Simple_repeat Simple_repeat 1 179 0 621 298 113 16 chr3 59428303 59428682 -168095896 - L2 LINE L2 -4 3268 2853 286 269 77 0 chr3 59428874 59428978 -168095600 + MER5A DNA MER1_type 51 162 -27 1229 137 0 6 chr3 59429188 59429363 -168095215 + FAM SINE Alu 1 174 -1 1797 137 36 16 chr3 59429426 59429542 -168095036 + AluSx SINE Alu 1 113 -199 219 36 0 0 chr3 59429542 59429570 -168095008 + (CAA)n Simple_repeat Simple_repeat 3 30 0 1797 137 36 16 chr3 59429570 59429759 -168094819 + AluSx SINE Alu 113 312 0 232 245 314 0 chr3 59429910 59430012 -168094566 + MIR SINE MIR 9 142 -120 219 256 58 58 chr3 59430372 59430437 -168094141 - MIR SINE MIR -79 129 62 1103 172 39 10 chr3 59430437 59430640 -168093938 - MER3 DNA MER1_type 0 209 1 422 261 7 12 chr3 59430649 59430777 -168093801 - MER5B DNA MER1_type 0 178 61 938 271 199 16 chr3 59431906 59432334 -168092244 - L2 LINE L2 0 3313 2808 321 330 9 38 chr3 59432429 59432594 -168091984 - MIR SINE MIR -64 144 13 2103 124 3 16 chr3 59432857 59433214 -168091364 + AluSq SINE Alu 1 313 0 1992 149 0 0 chr3 59433632 59433933 -168090645 - AluSx SINE Alu -11 301 1 1817 115 98 3 chr3 59433933 59434238 -168090340 - MER4B LTR ERV1 -245 365 32 2034 95 58 10 chr3 59434273 59434567 -168090011 - AluSc SINE Alu -1 308 1 1733 97 0 4 chr3 59434589 59434826 -168089752 - MER4B-int LTR ERV1 0 6758 6523 1979 107 68 0 chr3 59437481 59437761 -168086817 + AluSx SINE Alu 1 299 -13 372 317 0 16 chr3 59438064 59438187 -168086391 - MIR3 SINE MIR -54 154 34 214 333 14 0 chr3 59439585 59439657 -168084921 + MIR SINE MIR 178 250 -12 186 208 75 19 chr3 59439721 59439774 -168084804 - MIR SINE MIR -95 113 58 2071 109 17 3 chr3 59439785 59440079 -168084499 - AluSg SINE Alu -12 298 1 212 316 0 0 chr3 59442072 59442129 -168082449 - MIR SINE MIR -21 241 185 2186 95 0 26 chr3 59442129 59442434 -168082144 - AluSc SINE Alu -12 297 1 355 244 81 41 chr3 59443161 59443211 -168081367 + L1MC4 LINE L1 7864 7911 -131 405 0 0 0 chr3 59443211 59443256 -168081322 + (CA)n Simple_repeat Simple_repeat 2 46 0 355 244 81 41 chr3 59443256 59443377 -168081201 + L1MC4 LINE L1 7911 8042 0 270 222 10 50 chr3 59444063 59444162 -168080416 + CT-rich Low_complexity Low_complexity 4 98 0 328 329 0 13 chr3 59444749 59444904 -168079674 + C-rich Low_complexity Low_complexity 5 157 0 233 209 17 26 chr3 59444964 59445079 -168079499 + CT-rich Low_complexity Low_complexity 1 114 0 209 239 319 35 chr3 59447397 59447510 -168077068 - MIR3 SINE MIR -62 146 2 328 301 0 0 chr3 59448085 59448168 -168076410 + (CA)n Simple_repeat Simple_repeat 2 84 0 276 130 0 0 chr3 59454286 59454332 -168070246 + (A)n Simple_repeat Simple_repeat 1 46 0 247 169 28 0 chr3 59458958 59459029 -168065549 + (CGGGA)n Simple_repeat Simple_repeat 2 74 0 244 196 265 10 chr3 59461330 59461432 -168063146 + MIR SINE MIR 19 146 -62 190 320 200 16 chr3 59461721 59461846 -168062732 - MIR3 SINE MIR -20 188 41 1963 119 6 45 chr3 59462220 59462355 -168062223 + AluSx SINE Alu 1 140 -172 2336 71 0 0 chr3 59462355 59462661 -168061917 + AluY SINE Alu 1 306 0 1963 119 6 45 chr3 59462661 59462835 -168061743 + AluSx SINE Alu 140 299 -13 204 217 72 116 chr3 59463085 59463223 -168061355 - MIR SINE MIR -61 147 16 275 276 20 61 chr3 59463952 59464050 -168060528 - MIR SINE MIR -113 149 56 427 176 15 0 chr3 59465299 59465367 -168059211 + AluJ/FLAM SINE Alu 1 69 -243 1516 160 11 25 chr3 59465368 59465643 -168058935 + AluJo SINE Alu 31 301 -11 412 216 39 20 chr3 59465662 59465764 -168058814 - MIR SINE MIR -56 206 103 368 322 81 43 chr3 59465772 59466030 -168058548 + L3 LINE CR1 1277 1544 -33 244 254 42 0 chr3 59466229 59466300 -168058278 - MER96 DNA MER1_type? -98 77 4 185 341 61 8 chr3 59466359 59466491 -168058087 + L2 LINE L2 2470 2608 -706 279 364 23 8 chr3 59466751 59466880 -168057698 + L2 LINE L2 3180 3310 -3 354 45 0 0 chr3 59467342 59467386 -168057192 + (CA)n Simple_repeat Simple_repeat 1 44 0 278 293 12 12 chr3 59468100 59468182 -168056396 - MIR SINE MIR -87 121 40 1232 314 169 18 chr3 59468580 59469535 -168055043 + L2 LINE L2 2208 3310 -3 206 299 0 52 chr3 59469908 59470005 -168054573 + L2 LINE L2 3179 3270 -2 209 295 86 19 chr3 59471322 59471427 -168053151 - MIR3 SINE MIR -34 174 63 1977 141 7 3 chr3 59473108 59473412 -168051166 - AluJo SINE Alu -7 305 1 2370 66 0 7 chr3 59473424 59473725 -168050853 - AluY SINE Alu -12 299 1 801 234 0 0 chr3 59477294 59477469 -168047109 + C-rich Low_complexity Low_complexity 1 175 0 210 226 11 32 chr3 59477496 59477589 -168046989 + C-rich Low_complexity Low_complexity 2 92 0 1594 228 61 13 chr3 59477746 59478272 -168046306 - L1M4 LINE L1 -1930 4216 3666 395 228 98 57 chr3 59478423 59478546 -168046032 - HAL1b LINE L1 0 6121 1233 389 307 55 37 chr3 59478670 59478833 -168045745 + MIR SINE MIR 5 170 -92 2371 64 10 0 chr3 59478835 59479131 -168045447 - AluSx SINE Alu -13 299 1 226 296 11 23 chr3 59479279 59479367 -168045211 + L1M4b LINE L1 432 518 -6341 2006 112 7 0 chr3 59482424 59482709 -168041869 - AluSx SINE Alu -25 287 1 202 205 0 90 chr3 59483145 59483223 -168041355 + C-rich Low_complexity Low_complexity 2 72 0 727 179 8 0 chr3 59483388 59483511 -168041067 - FLAM_C SINE Alu -19 124 1 1923 123 10 7 chr3 59483876 59484177 -168040401 + AluSx SINE Alu 3 304 -8 3375 185 13 29 chr3 59484494 59484553 -168040025 - L1 LINE L1 -1092 5054 4996 1741 180 0 10 chr3 59484553 59484858 -168039720 + AluJb SINE Alu 1 302 -10 3375 185 13 29 chr3 59484858 59485619 -168038959 - L1 LINE L1 -1150 4996 4247 368 240 0 34 chr3 59485649 59485890 -168038688 + C-rich Low_complexity Low_complexity 1 232 0 663 120 247 20 chr3 59487505 59487655 -168036923 + AluY SINE Alu 103 286 -25 256 267 53 0 chr3 59487659 59487734 -168036844 - L1ME1 LINE L1 -40 6126 6048 1822 113 31 4 chr3 59488921 59489177 -168035401 + AluSg SINE Alu 34 296 -14 235 170 0 0 chr3 59489399 59489446 -168035132 - L1MB4 LINE L1 0 6180 6134 267 31 0 0 chr3 59489469 59489501 -168035077 + (TA)n Simple_repeat Simple_repeat 2 33 0 1881 124 79 7 chr3 59489501 59489783 -168034795 - AluSx SINE Alu -6 306 1 283 222 56 0 chr3 59489838 59489928 -168034650 - L1ME1 LINE L1 -254 5867 5773 1287 131 36 2 chr3 59490398 59490807 -168033771 - MER84 LTR ERVI 0 507 2 2036 152 7 3 chr3 59490824 59491134 -168033444 + AluJb SINE Alu 1 311 -1 1798 170 3 25 chr3 59491414 59491732 -168032846 + AluJb SINE Alu 1 311 -1 322 183 86 11 chr3 59491854 59491947 -168032631 + LTR24B LTR ERV1 4 103 -473 233 209 17 26 chr3 59492331 59492446 -168032132 + CT-rich Low_complexity Low_complexity 1 114 0 185 239 319 35 chr3 59494763 59494876 -168029702 - MIR3 SINE MIR -62 146 2 328 301 0 0 chr3 59495451 59495534 -168029044 + (CA)n Simple_repeat Simple_repeat 2 84 0 234 212 30 15 chr3 59497395 59497461 -168027117 + L3 LINE CR1 1156 1222 -355 247 296 74 59 chr3 59502184 59502319 -168022259 + MIR3 SINE MIR 21 157 -51 662 128 84 84 chr3 59502734 59502876 -168021702 - MER53 DNA DNA -1 188 44 2331 77 11 0 chr3 59502876 59503163 -168021415 + AluSx SINE Alu 1 290 -22 662 128 84 84 chr3 59503163 59503199 -168021379 - MER53 DNA DNA -144 45 10 2030 118 3 3 chr3 59503770 59504058 -168020520 - AluSx SINE Alu -24 288 1 967 149 48 0 chr3 59504547 59504715 -168019863 + AluJo SINE Alu 1 176 -136 2289 101 3 3 chr3 59504934 59505231 -168019347 - AluSx SINE Alu -15 297 1 2381 113 0 0 chr3 59505810 59506119 -168018459 - AluSx SINE Alu -3 309 1 1954 140 14 0 chr3 59506275 59506561 -168018017 - AluSx SINE Alu -14 298 9 1231 151 92 118 chr3 59506920 59507277 -168017301 - MER7A DNA MER2_type 0 346 1 2127 129 6 22 chr3 59507953 59508270 -168016308 + AluSx SINE Alu 1 312 0 1888 115 4 7 chr3 59508611 59508880 -168015698 - AluY SINE Alu 0 311 44 2287 114 0 0 chr3 59508881 59509178 -168015400 - AluSq SINE Alu -16 297 1 1878 132 44 0 chr3 59509267 59509540 -168015038 + AluJb SINE Alu 12 296 -16 1672 114 155 0 chr3 59511631 59511902 -168012676 + AluSq SINE Alu 1 313 0 875 134 0 0 chr3 59511921 59512048 -168012530 + AluJb SINE Alu 169 295 -17 258 160 0 20 chr3 59512238 59512288 -168012290 - Alu SINE Alu -5 297 249 1878 155 3 16 chr3 59512968 59513277 -168011301 + AluSx SINE Alu 1 305 -7 1980 125 54 0 chr3 59513513 59513808 -168010770 - AluY SINE Alu 0 311 1 1047 98 8 0 chr3 59513808 59513941 -168010637 - AluSq/x SINE Alu -178 135 2 2152 123 3 0 chr3 59514684 59514977 -168009601 - AluSx SINE Alu -18 294 1 842 212 17 6 chr3 59515179 59515358 -168009220 + MER5A DNA MER1_type 3 183 -6 3506 161 68 8 chr3 59515412 59516121 -168008457 - L1MB7 LINE L1 -16 6168 5418 2285 102 23 0 chr3 59516671 59516976 -168007602 - AluSp SINE Alu -1 312 1 2386 89 7 0 chr3 59517478 59517781 -168006797 - AluSq SINE Alu -8 305 1 223 282 35 12 chr3 59518891 59518976 -168005602 - MIR SINE MIR -99 163 77 232 310 28 0 chr3 59522080 59522151 -168002427 - MIR SINE MIR -124 138 66 2606 60 3 0 chr3 59522589 59522890 -168001688 + AluSp SINE Alu 1 302 -11 286 224 208 27 chr3 59523225 59523408 -168001170 - L1ME4a LINE L1 -101 6020 5805 2185 106 34 3 chr3 59524658 59524950 -167999628 + AluSq SINE Alu 1 301 -12 2209 100 17 0 chr3 59525216 59525515 -167999063 - AluSp SINE Alu -9 304 1 1459 168 4 4 chr3 59525518 59525750 -167998828 - AluSg/x SINE Alu -4 306 75 3578 204 27 18 chr3 59525751 59526502 -167998076 - L1ME2 LINE L1 -34 6130 5370 2411 83 0 16 chr3 59526502 59526815 -167997763 - AluSc SINE Alu -1 308 1 3578 204 27 18 chr3 59526815 59526852 -167997726 - L1ME2 LINE L1 -794 5370 5335 623 121 0 10 chr3 59526953 59527052 -167997526 + AluJo SINE Alu 33 130 -182 2344 113 3 0 chr3 59528471 59528781 -167995797 - AluSx SINE Alu -1 311 1 979 152 105 0 chr3 59529144 59529315 -167995263 - MER5A DNA MER1_type 0 189 1 189 74 0 0 chr3 59529521 59529548 -167995030 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2228 100 3 10 chr3 59529554 59529844 -167994734 - AluSx SINE Alu -24 288 1 1121 159 12 0 chr3 59529885 59530055 -167994523 + AluJo SINE Alu 136 307 -5 2292 119 3 0 chr3 59530525 59530837 -167993741 - AluSq SINE Alu 0 313 1 207 0 0 0 chr3 59532722 59532745 -167991833 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 251 232 199 59 chr3 59532760 59533032 -167991546 - L1MC5 LINE L1 -51 7910 7601 1693 223 124 17 chr3 59533961 59534491 -167990087 + L1MD3 LINE L1 7408 7994 -1 850 166 89 13 chr3 59535668 59535825 -167988753 - FRAM SINE Alu -7 169 1 2419 51 48 3 chr3 59535995 59536289 -167988289 - AluY SINE Alu -4 307 1 3460 182 45 17 chr3 59537721 59538469 -167986109 - L1ME1 LINE L1 -15 6151 5383 2365 185 88 56 chr3 59538482 59538646 -167985932 - L1ME2 LINE L1 -966 5180 5023 2063 151 6 0 chr3 59538646 59538957 -167985621 - AluSq SINE Alu 0 313 1 2365 185 88 56 chr3 59538957 59539525 -167985053 - L1ME2 LINE L1 -1123 5023 4419 1155 238 105 41 chr3 59539525 59539962 -167984616 + MLT1C LTR MaLR 1 465 -2 2365 185 88 56 chr3 59539962 59540000 -167984578 - L1ME2 LINE L1 -1727 4419 4384 775 232 91 51 chr3 59539993 59540402 -167984176 + L1MDa LINE L1 1304 1877 -4549 * 1102 234 87 9 chr3 59540410 59540889 -167983689 - L1MCc LINE L1 -4887 1536 1264 748 273 13 58 chr3 59540912 59541220 -167983358 - L1MCc LINE L1 -5314 1109 816 1079 284 49 33 chr3 59541375 59541826 -167982752 - L1MCc LINE L1 -5942 481 24 2112 123 0 0 chr3 59542340 59542632 -167981946 - AluSx SINE Alu -20 292 1 526 317 54 27 chr3 59543209 59543430 -167981148 + MIR SINE MIR 36 262 0 296 263 20 40 chr3 59544055 59544154 -167980424 - MIR SINE MIR -81 181 85 458 367 38 12 chr3 59545983 59546223 -167978355 + MIR SINE MIR 13 258 -4 495 273 49 12 chr3 59548484 59548646 -167975932 + MIR SINE MIR 16 182 -69 368 289 83 0 chr3 59550235 59550356 -167974222 + MIR3 SINE MIR 56 186 -22 351 295 19 19 chr3 59555269 59555374 -167969204 - L2 LINE L2 0 3272 3168 182 304 111 44 chr3 59556251 59556386 -167968192 + L2 LINE L2 3125 3268 -4 323 294 84 17 chr3 59556410 59556529 -167968049 - MIR SINE MIR -122 140 14 273 332 125 3 chr3 59558234 59558379 -167966199 + L2 LINE L2 2842 2999 -314 618 198 302 0 chr3 59560864 59561036 -167963542 - MER58A DNA MER1_type 0 224 1 729 241 0 0 chr3 59561969 59562114 -167962464 + MIR SINE MIR 33 177 -85 2195 74 40 3 chr3 59563402 59563701 -167960877 + AluY SINE Alu 1 310 -1 25 65 0 0 chr3 59563760 59563806 -167960772 + AT_rich Low_complexity Low_complexity 1 46 0 241 341 0 0 chr3 59567560 59567645 -167956933 + MIR SINE MIR 67 151 -111 2373 79 0 0 chr3 59568713 59569018 -167955560 + AluSx SINE Alu 1 305 -7 182 209 70 0 chr3 59572262 59572305 -167952273 + MER5B DNA MER1_type 133 178 0 711 269 52 39 chr3 59572542 59572924 -167951654 + L2 LINE L2 2624 3005 -308 468 287 9 0 chr3 59572891 59573006 -167951572 + MIR SINE MIR 102 217 -45 * 189 182 30 15 chr3 59573749 59573815 -167950763 + CT-rich Low_complexity Low_complexity 1 67 0 273 277 85 8 chr3 59574457 59574587 -167949991 + MER103 DNA DNA 20 159 -7 1571 97 8 0 chr3 59575330 59575568 -167949010 - MER1B DNA MER1_type 0 339 100 1817 157 6 25 chr3 59578003 59578321 -167946257 - AluJb SINE Alu 0 312 1 240 232 43 43 chr3 59578355 59578424 -167946154 + MIR SINE MIR 15 83 -179 228 308 187 17 chr3 59578493 59578841 -167945737 - L2 LINE L2 -337 2977 2571 190 161 0 0 chr3 59579181 59579212 -167945366 + MIR SINE MIR 115 145 -63 295 170 19 0 chr3 59579482 59579535 -167945043 + MIR SINE MIR 90 143 -65 999 192 5 5 chr3 59579944 59580137 -167944441 + AluJo SINE Alu 120 312 0 421 328 86 0 chr3 59580404 59580578 -167944000 + MER117 DNA MER1_type 9 197 0 280 296 40 48 chr3 59580674 59580799 -167943779 + L2 LINE L2 3147 3270 -2 237 395 12 0 chr3 59581345 59581512 -167943066 + (TG)n Simple_repeat Simple_repeat 1 169 0 207 306 69 0 chr3 59583760 59583832 -167940746 + L2 LINE L2 3193 3269 -3 359 143 0 0 chr3 59585131 59585187 -167939391 + L2 LINE L2 3253 3308 -5 35 0 0 0 chr3 59585561 59585596 -167938982 + GC_rich Low_complexity Low_complexity 1 35 0 320 211 11 11 chr3 59585651 59585746 -167938832 + (CGGG)n Simple_repeat Simple_repeat 4 98 0 40 59 0 0 chr3 59585761 59585829 -167938749 + GC_rich Low_complexity Low_complexity 1 68 0 266 229 19 38 chr3 59585883 59585988 -167938590 + G-rich Low_complexity Low_complexity 1 103 0 286 180 68 25 chr3 59587582 59587663 -167936915 + MIR3 SINE MIR 75 161 -47 202 214 0 0 chr3 59589486 59589523 -167935055 - MIR SINE MIR -113 149 114 226 200 67 0 chr3 59590589 59590649 -167933929 + MIR SINE MIR 81 144 -118 195 260 68 27 chr3 59590794 59590867 -167933711 - MIR SINE MIR -91 171 96 195 42 0 0 chr3 59591792 59591816 -167932762 + (T)n Simple_repeat Simple_repeat 1 24 0 189 0 0 0 chr3 59591950 59591971 -167932607 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 560 158 9 0 chr3 59592394 59592508 -167932070 + CT-rich Low_complexity Low_complexity 2 116 0 210 143 0 0 chr3 59593191 59593226 -167931352 + (TA)n Simple_repeat Simple_repeat 1 35 0 200 280 97 32 chr3 59594848 59594941 -167929637 + MIR SINE MIR 42 140 -122 639 0 0 0 chr3 59596279 59596350 -167928228 + (CA)n Simple_repeat Simple_repeat 2 72 0 193 330 128 6 chr3 59596772 59596951 -167927627 - L2 LINE L2 -508 2806 2606 266 136 0 0 chr3 59597294 59597338 -167927240 + MIR SINE MIR 110 153 -109 217 339 81 16 chr3 59597461 59597585 -167926993 + MIR3 SINE MIR 61 192 -16 547 300 101 4 chr3 59598202 59598429 -167926149 - MIR SINE MIR 0 262 14 182 286 18 0 chr3 59598787 59598843 -167925735 + L2 LINE L2 2920 2976 -338 319 304 104 40 chr3 59598863 59598994 -167925584 - L1MDa LINE L1 -2953 3587 3466 2219 113 10 0 chr3 59598994 59599303 -167925275 - AluSq SINE Alu -1 312 1 319 304 104 40 chr3 59599303 59599424 -167925154 - L1MDa LINE L1 -3074 3466 1235 2149 86 16 38 chr3 59599426 59599739 -167924839 - AluY SINE Alu -2 309 4 735 66 0 0 chr3 59599739 59599845 -167924733 + (TTCC)n Simple_repeat Simple_repeat 1 106 0 1791 145 66 0 chr3 59599846 59600135 -167924443 - AluSx SINE Alu -4 308 1 226 314 88 38 chr3 59601125 59601284 -167923294 - L2 LINE L2 -503 2811 2645 399 275 19 9 chr3 59603408 59603524 -167921054 - MIR SINE MIR -59 149 46 328 331 50 0 chr3 59604529 59604650 -167919928 + MIR3 SINE MIR 30 156 -52 1458 182 7 55 chr3 59605287 59605578 -167919000 + AluJo SINE Alu 20 296 -16 300 333 139 0 chr3 59605657 59605786 -167918792 + MIR SINE MIR 17 163 -99 1371 176 4 8 chr3 59606820 59607075 -167917503 - AluSq SINE Alu -57 256 3 1483 214 10 3 chr3 59607441 59607762 -167916816 + AluJo SINE Alu 1 323 0 1560 137 29 46 chr3 59607768 59608096 -167916482 + AluSq SINE Alu 1 313 0 2190 89 7 0 chr3 59608096 59608399 -167916179 + AluSp SINE Alu 1 305 -8 188 266 138 21 chr3 59608515 59608609 -167915969 - MIR SINE MIR -84 124 20 489 249 98 58 chr3 59608671 59608759 -167915819 + L1MC4 LINE L1 7750 7833 -209 2303 88 0 0 chr3 59608759 59609054 -167915524 + AluSg SINE Alu 1 295 -15 489 249 98 58 chr3 59609054 59609242 -167915336 + L1MC4 LINE L1 7833 8037 -5 2141 109 10 22 chr3 59609307 59609619 -167914959 + AluSx SINE Alu 1 308 -4 333 0 0 0 chr3 59610221 59610258 -167914320 + (TAA)n Simple_repeat Simple_repeat 2 38 0 217 232 0 42 chr3 59611512 59611607 -167912971 + (CGGGG)n Simple_repeat Simple_repeat 2 92 0 210 209 58 35 chr3 59611836 59611922 -167912656 + (CGGGG)n Simple_repeat Simple_repeat 2 89 0 792 37 92 9 chr3 59612237 59612346 -167912232 - AluSx SINE Alu -152 160 43 353 252 14 84 chr3 59612347 59612396 -167912182 - L1ME1 LINE L1 0 6166 6115 1321 110 146 16 chr3 59612396 59612650 -167911928 + AluSx SINE Alu 1 287 -25 353 252 14 84 chr3 59612650 59612743 -167911835 - L1ME1 LINE L1 -51 6115 6034 1884 102 27 0 chr3 59613917 59614173 -167910405 + AluSg SINE Alu 34 296 -14 213 39 0 0 chr3 59614465 59614491 -167910087 + (TA)n Simple_repeat Simple_repeat 2 27 0 1431 171 79 10 chr3 59614491 59614775 -167909803 - AluSx SINE Alu -5 307 1 260 222 56 0 chr3 59614830 59614920 -167909658 - L1ME1 LINE L1 -254 5867 5773 1222 128 36 2 chr3 59615390 59615799 -167908779 - MER84 LTR ERVI 0 507 2 2074 110 33 3 chr3 59615816 59616116 -167908462 + AluSx SINE Alu 1 309 -3 374 330 10 0 chr3 59616122 59616225 -167908353 + L1M4 LINE L1 4183 4286 -1860 515 211 158 0 chr3 59616342 59616456 -167908122 - MER45A DNA AcHobo -44 134 3 262 315 74 28 chr3 59616516 59616624 -167907954 - MIR SINE MIR -129 133 21 1917 112 19 0 chr3 59616962 59617141 -167907437 - AluSx SINE Alu -1 311 124 306 0 0 0 chr3 59617141 59617175 -167907403 + (TTG)n Simple_repeat Simple_repeat 3 36 0 1917 112 19 0 chr3 59617175 59617262 -167907316 - AluSx SINE Alu -188 124 40 1094 168 47 0 chr3 59617363 59617554 -167907024 + AluJo SINE Alu 1 200 -112 270 222 10 50 chr3 59618419 59618518 -167906060 + GA-rich Low_complexity Low_complexity 4 98 0 333 240 88 41 chr3 59619204 59619325 -167905253 - L1MC4 LINE L1 0 8042 7909 405 0 0 0 chr3 59619325 59619370 -167905208 + (TG)n Simple_repeat Simple_repeat 2 46 0 333 240 88 41 chr3 59619370 59619419 -167905159 - L1MC4 LINE L1 -133 7909 7864 2271 89 0 13 chr3 59620147 59620450 -167904128 + AluY SINE Alu 1 299 -12 1977 141 7 3 chr3 59620462 59620766 -167903812 + AluJo SINE Alu 1 305 -7 209 295 86 19 chr3 59622446 59622551 -167902027 + MIR3 SINE MIR 63 174 -34 206 299 0 52 chr3 59623868 59623965 -167900613 - L2 LINE L2 -2 3270 3179 1232 314 169 18 chr3 59624338 59625293 -167899285 - L2 LINE L2 -3 3310 2208 278 293 12 12 chr3 59625691 59625773 -167898805 + MIR SINE MIR 40 121 -87 336 48 0 0 chr3 59626481 59626523 -167898055 + (TG)n Simple_repeat Simple_repeat 1 42 0 283 364 23 8 chr3 59626987 59627116 -167897462 - L2 LINE L2 -3 3310 3180 185 341 61 8 chr3 59627376 59627508 -167897070 - L2 LINE L2 -706 2608 2470 244 254 42 0 chr3 59627567 59627638 -167896940 + MER96 DNA MER1_type? 4 77 -98 378 320 81 42 chr3 59627836 59628095 -167896483 - L3 LINE CR1 -32 1545 1277 412 216 39 20 chr3 59628103 59628205 -167896373 + MIR SINE MIR 103 206 -56 1516 160 11 25 chr3 59628224 59628499 -167896079 - AluJo SINE Alu -11 301 31 427 176 15 0 chr3 59628500 59628568 -167896010 - AluJ/FLAM SINE Alu -243 69 1 275 276 20 61 chr3 59629817 59629915 -167894663 + MIR SINE MIR 56 149 -113 189 264 81 23 chr3 59629991 59630078 -167894500 - MIR SINE MIR -69 139 48 204 217 72 116 chr3 59630644 59630782 -167893796 + MIR SINE MIR 16 147 -61 1963 119 6 45 chr3 59631032 59631206 -167893372 - AluSx SINE Alu -13 299 120 207 0 0 0 chr3 59631206 59631229 -167893349 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 2335 71 0 0 chr3 59631229 59631512 -167893066 - AluY SINE Alu -28 283 1 1963 119 6 45 chr3 59631512 59631647 -167892931 - AluSx SINE Alu -190 122 1 190 320 200 16 chr3 59632021 59632146 -167892432 + MIR3 SINE MIR 41 188 -20 244 196 265 10 chr3 59632434 59632536 -167892042 - MIR SINE MIR -62 146 19 268 230 11 58 chr3 59635095 59635182 -167889396 - L2 LINE L2 -258 3014 2932 187 336 122 15 chr3 59635210 59635341 -167889237 + L2 LINE L2 3100 3244 -28 194 244 0 0 chr3 59635391 59635436 -167889142 + MIR SINE MIR 101 145 -117 411 236 62 87 chr3 59635529 59635804 -167888774 - L1MC4 LINE L1 -24 8018 7751 2114 89 20 0 chr3 59636612 59636905 -167887673 - AluSx SINE Alu -13 299 1 226 278 19 0 chr3 59637099 59637153 -167887425 - L2 LINE L2 -3 3269 3215 464 242 19 62 chr3 59637590 59637751 -167886827 + MIR SINE MIR 21 174 -88 586 233 24 14 chr3 59637886 59638048 -167886530 + MIR SINE MIR 35 205 -57 2166 120 10 0 chr3 59639351 59639659 -167884919 - AluSx SINE Alu -1 311 1 213 121 0 0 chr3 59639660 59639693 -167884885 + (T)n Simple_repeat Simple_repeat 1 33 0 2269 103 7 0 chr3 59639664 59639974 -167884604 - AluSq SINE Alu -1 312 1 216 214 0 0 chr3 59641423 59641479 -167883099 + (TCTA)n Simple_repeat Simple_repeat 1 56 0 419 287 230 27 chr3 59641537 59641956 -167882622 - L2 LINE L2 -1 3271 2772 212 238 0 0 chr3 59642526 59642568 -167882010 + MIR SINE MIR 111 152 -110 389 336 22 7 chr3 59642735 59642872 -167881706 + L2 LINE L2 3174 3312 -1 2148 129 3 0 chr3 59648105 59648414 -167876164 + AluSg SINE Alu 1 310 0 1507 148 4 8 chr3 59648432 59648669 -167875909 - AluSx SINE Alu -76 236 1 739 327 127 14 chr3 59648731 59649165 -167875413 - L2 LINE L2 -5 3308 2826 228 35 0 0 chr3 59649224 59649253 -167875325 + (CCCTG)n Simple_repeat Simple_repeat 1 29 0 2046 128 3 3 chr3 59650174 59650480 -167874098 - AluSx SINE Alu -2 310 5 228 358 64 0 chr3 59650534 59650643 -167873935 - MIR SINE MIR -99 163 48 1608 164 5 101 chr3 59651139 59651427 -167873151 - L1MC4 LINE L1 -974 7068 6830 1699 173 6 28 chr3 59651427 59651745 -167872833 - AluJo SINE Alu -1 311 1 1608 164 5 101 chr3 59651745 59651870 -167872708 - L1MC4 LINE L1 -1212 6830 6695 241 167 0 0 chr3 59651870 59651912 -167872666 + MER47A DNA MER2_type 1 42 -324 2160 123 16 0 chr3 59651934 59652242 -167872336 - AluSq SINE Alu 0 313 1 1712 142 49 9 chr3 59652243 59652568 -167872010 + MER47A DNA MER2_type 29 366 0 2841 126 29 4 chr3 59652577 59653053 -167871525 - Tigger3(Golem) DNA MER2_type -1 3028 2541 1796 158 7 14 chr3 59653066 59653357 -167871221 + AluSx SINE Alu 1 289 -23 719 74 0 6 chr3 59653399 59653643 -167870935 - AluY SINE Alu -3 308 17 1270 102 11 6 chr3 59653722 59653898 -167870680 - AluSc SINE Alu -116 193 17 1446 98 10 5 chr3 59653974 59654168 -167870410 - AluSq SINE Alu -118 195 1 2235 110 3 0 chr3 59654185 59654493 -167870085 - AluSp SINE Alu -4 309 1 4441 195 12 20 chr3 59654494 59654828 -167869750 - L1P LINE L1 -814 5332 4997 1729 178 3 10 chr3 59654828 59655132 -167869446 + AluJb SINE Alu 1 302 -10 4441 195 12 20 chr3 59655132 59655876 -167868702 - L1P LINE L1 -1149 4997 4263 610 333 81 59 chr3 59655894 59656341 -167868237 - L1MCa LINE L1 -3897 2511 2075 1770 174 3 10 chr3 59656341 59656652 -167867926 - AluJo SINE Alu -3 309 1 610 333 81 59 chr3 59656652 59656668 -167867910 - L1MCa LINE L1 -4333 2075 2152 2093 130 0 0 chr3 59656668 59656967 -167867611 - AluSx SINE Alu -13 299 1 610 333 81 59 chr3 59656967 59657046 -167867532 - L1MCa LINE L1 -4255 2153 2077 421 270 123 19 chr3 59657089 59657300 -167867278 - HAL1b LINE L1 -703 645 413 2110 106 0 26 chr3 59657302 59657604 -167866974 + AluSx SINE Alu 1 294 -18 387 309 167 46 chr3 59657604 59658129 -167866449 - L1MCa LINE L1 -1205 1562 887 318 26 0 0 chr3 59658351 59658390 -167866188 + (TG)n Simple_repeat Simple_repeat 2 40 0 1811 140 14 3 chr3 59658648 59658940 -167865638 - AluJo SINE Alu -17 295 1 2120 120 0 0 chr3 59659003 59659294 -167865284 - AluSx SINE Alu -21 291 1 414 57 0 0 chr3 59659512 59659565 -167865013 + (TTCC)n Simple_repeat Simple_repeat 4 56 0 943 218 47 8 chr3 59659845 59660087 -167864491 - LTR16A1 LTR ERVL 0 457 207 634 70 0 0 chr3 59660090 59660176 -167864402 - AluJ/FRAM SINE Alu -6 306 221 230 335 86 29 chr3 59660209 59660418 -167864160 - MLT1L LTR MaLR -389 226 6 827 285 135 92 chr3 59660431 59661691 -167862887 - L2 LINE L2 -50 3263 1940 256 319 109 0 chr3 59662187 59662325 -167862253 - L2 LINE L2 -2440 874 722 249 33 0 0 chr3 59662416 59662446 -167862132 + (TGAG)n Simple_repeat Simple_repeat 2 31 0 319 274 9 18 chr3 59664646 59664759 -167859819 + (TCTCTG)n Simple_repeat Simple_repeat 2 113 0 195 129 0 0 chr3 59664800 59664831 -167859747 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 578 305 135 17 chr3 59665541 59666022 -167858556 - L2 LINE L2 -2 3270 2738 276 343 105 12 chr3 59666618 59666790 -167857788 - MIR SINE MIR -9 253 66 266 342 0 0 chr3 59666799 59666875 -167857703 - MIR SINE MIR -140 122 47 2228 96 3 3 chr3 59669408 59669709 -167854869 - AluSq SINE Alu -12 301 1 203 171 0 0 chr3 59670787 59670822 -167853756 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 389 267 45 59 chr3 59672392 59672468 -167852110 - MIR SINE MIR -62 146 126 1475 152 122 8 chr3 59672468 59672763 -167851815 + AluJo SINE Alu 1 302 0 389 267 45 59 chr3 59672763 59672850 -167851728 - MIR SINE MIR -82 126 39 2309 93 3 0 chr3 59672910 59673211 -167851367 + AluSx SINE Alu 1 302 -10 240 304 120 57 chr3 59674297 59674580 -167849998 + L2 LINE L2 2933 3233 -39 1924 125 0 58 chr3 59675590 59675917 -167848661 - AluSq SINE Alu -5 308 1 391 180 112 0 chr3 59675917 59676006 -167848572 - MER103 DNA DNA -67 99 1 579 273 127 3 chr3 59679096 59679303 -167845275 + MIR SINE MIR 21 251 -11 429 340 64 5 chr3 59681772 59681958 -167842620 - MIR SINE MIR -20 242 48 357 303 133 20 chr3 59682183 59682378 -167842200 - MLT1K LTR MaLR -184 404 188 200 262 134 60 chr3 59683004 59683153 -167841425 - L2 LINE L2 -160 3112 2953 661 268 84 9 chr3 59684801 59685034 -167839544 - MIR SINE MIR 0 262 2 420 301 142 5 chr3 59685536 59685755 -167838823 + MIR SINE MIR 7 255 -7 316 301 23 40 chr3 59685850 59686026 -167838552 - HAL1 LINE L1 -1797 710 538 2403 137 75 40 chr3 59686115 59686145 -167838433 - MER31A LTR ERV1 0 485 457 2305 71 7 0 chr3 59686145 59686439 -167838139 - AluSp SINE Alu -17 296 1 2403 137 75 40 chr3 59686439 59686877 -167837701 - MER31A LTR ERV1 -28 457 1 228 265 133 78 chr3 59689940 59690106 -167834472 + L3 LINE CR1 1382 1556 -21 431 198 0 0 chr3 59691671 59691752 -167832826 - ORSL DNA AcHobo -20 255 175 279 200 35 12 chr3 59691865 59691950 -167832628 + (CGG)n Simple_repeat Simple_repeat 2 88 0 373 222 83 21 chr3 59693618 59693762 -167830816 - ORSL DNA AcHobo -90 185 33 481 267 157 12 chr3 59694092 59694264 -167830314 + MIR SINE MIR 57 253 -9 1402 292 208 20 chr3 59695055 59696545 -167828033 + L2 LINE L2 1458 3257 -56 235 303 51 28 chr3 59697961 59698139 -167826439 - L2 LINE L2 -686 2628 2447 1609 153 92 129 chr3 59699338 59699656 -167824922 - LTR42 LTR ERVL -11 484 190 1737 158 0 37 chr3 59699656 59699978 -167824600 - AluJb SINE Alu -2 310 1 1609 153 92 129 chr3 59699978 59700162 -167824416 - LTR42 LTR ERVL -305 190 1 189 323 118 10 chr3 59700625 59700820 -167823758 - L2 LINE L2 -224 3048 2833 282 360 35 9 chr3 59702646 59702760 -167821818 + MIR SINE MIR 24 140 -68 351 294 22 59 chr3 59703047 59703183 -167821395 + MIR3 SINE MIR 11 141 -67 199 277 15 15 chr3 59704084 59704149 -167820429 + MIR SINE MIR 73 137 -125 255 337 35 0 chr3 59704152 59704238 -167820340 - L2 LINE L2 0 3272 3184 281 313 24 0 chr3 59704297 59704380 -167820198 + MER91B DNA MER1_type 46 130 -60 202 277 64 85 chr3 59704404 59704498 -167820080 + MER91B DNA MER1_type 99 190 0 217 284 62 12 chr3 59704608 59704689 -167819889 - MIR3 SINE MIR -19 189 105 186 351 27 0 chr3 59706252 59706326 -167818252 + MER5A DNA MER1_type 47 122 -67 414 231 22 0 chr3 59707611 59707702 -167816876 - L2 LINE L2 0 3313 3221 523 288 166 5 chr3 59707725 59707930 -167816648 - MIR SINE MIR -3 259 22 2211 87 0 29 chr3 59708396 59708705 -167815873 + AluSx SINE Alu 1 300 -12 1459 165 0 0 chr3 59708772 59708996 -167815582 + AluJb SINE Alu 24 247 -65 1979 107 68 0 chr3 59712202 59712482 -167812096 + AluSx SINE Alu 1 299 -13 372 317 0 16 chr3 59712785 59712908 -167811670 - MIR3 SINE MIR -54 154 34 214 333 14 0 chr3 59714305 59714377 -167810201 + MIR SINE MIR 178 250 -12 186 208 75 19 chr3 59714441 59714494 -167810084 - MIR SINE MIR -95 113 58 2071 109 17 3 chr3 59714505 59714799 -167809779 - AluSg SINE Alu -12 298 1 585 288 83 31 chr3 59716792 59716849 -167807729 - MIR SINE MIR -21 241 188 2186 95 0 26 chr3 59716849 59717154 -167807424 - AluSc SINE Alu -12 297 1 585 288 83 31 chr3 59717154 59717325 -167807253 - MIR SINE MIR -74 188 1 249 139 0 0 chr3 59724042 59724085 -167800493 + (A)n Simple_repeat Simple_repeat 1 43 0 283 174 23 0 chr3 59728725 59728811 -167795767 + (CGGGG)n Simple_repeat Simple_repeat 2 89 0 425 211 17 57 chr3 59728898 59729073 -167795505 + (CGGGG)n Simple_repeat Simple_repeat 2 169 0 1581 163 53 3 chr3 59730497 59730779 -167793799 + AluJb SINE Alu 1 296 -16 918 202 77 5 chr3 59731055 59731263 -167793315 + MIR SINE MIR 2 224 -38 715 249 31 78 chr3 59731649 59731906 -167792672 + MIR SINE MIR 12 256 -6 2270 87 0 0 chr3 59732117 59732404 -167792174 + AluSx SINE Alu 1 287 -25 1517 142 82 35 chr3 59733291 59733573 -167791005 + AluJb SINE Alu 1 295 -17 3488 201 40 33 chr3 59733722 59733763 -167790815 - L1ME2 LINE L1 0 6164 6125 1567 100 9 5 chr3 59733763 59733983 -167790595 - AluSg/x SINE Alu -15 297 77 3488 201 40 33 chr3 59733983 59734736 -167789842 - L1ME2 LINE L1 -39 6125 5379 2298 90 0 10 chr3 59734736 59735048 -167789530 - AluSc SINE Alu 0 309 1 3488 201 40 33 chr3 59735048 59735117 -167789461 - L1ME2 LINE L1 -785 5379 5312 2389 60 3 0 chr3 59735117 59735415 -167789163 + AluY SINE Alu 1 299 -12 3488 201 40 33 chr3 59735415 59736810 -167787768 - L1ME2 LINE L1 -852 5312 3666 395 228 98 57 chr3 59736961 59737084 -167787494 - HAL1b LINE L1 0 6121 1233 541 312 36 52 chr3 59737208 59737373 -167787205 + MIR SINE MIR 5 166 -96 2368 64 10 0 chr3 59737373 59737669 -167786909 - AluSx SINE Alu -13 299 1 541 312 36 52 chr3 59737669 59737753 -167786825 + MIR SINE MIR 166 250 -12 552 263 147 0 chr3 59737792 59737948 -167786630 + MIR SINE MIR 79 257 -5 2393 66 0 7 chr3 59737991 59738295 -167786283 - AluY SINE Alu -9 302 1 2146 113 3 0 chr3 59742723 59743023 -167781555 + AluSq SINE Alu 1 301 -12 721 243 119 52 chr3 59743029 59743448 -167781130 - HAL1 LINE L1 -295 2212 1766 303 28 0 0 chr3 59743908 59743944 -167780634 + (CA)n Simple_repeat Simple_repeat 1 36 0 267 31 0 0 chr3 59744089 59744121 -167780457 + (T)n Simple_repeat Simple_repeat 1 32 0 498 130 0 13 chr3 59744130 59744207 -167780371 - AluS SINE Alu -233 76 1 2126 87 47 7 chr3 59744237 59744535 -167780043 - AluSg SINE Alu 0 310 1 1670 144 63 14 chr3 59744537 59744822 -167779756 - AluJb SINE Alu -13 299 1 4060 147 91 21 chr3 59744828 59745380 -167779198 - L1MC3 LINE L1 -1 7784 7272 2159 116 16 0 chr3 59745380 59745683 -167778895 - AluSg SINE Alu 0 310 3 4060 147 91 21 chr3 59745683 59745861 -167778717 - L1MC3 LINE L1 -513 7272 7108 2261 87 13 0 chr3 59745861 59746161 -167778417 - AluSq SINE Alu -9 304 1 4060 147 91 21 chr3 59746161 59746292 -167778286 - L1MC3 LINE L1 -677 7108 6988 180 0 0 0 chr3 59746292 59746312 -167778266 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 4060 147 91 21 chr3 59746312 59746361 -167778217 - L1MC3 LINE L1 -797 6988 6808 227 339 102 24 chr3 59747103 59747230 -167777348 + L2 LINE L2 3136 3272 0 2053 124 20 0 chr3 59749245 59749544 -167775034 - AluSx SINE Alu -6 306 2 231 215 0 63 chr3 59752354 59752433 -167772145 + CT-rich Low_complexity Low_complexity 3 76 0 201 196 0 0 chr3 59755093 59755139 -167769439 + (CA)n Simple_repeat Simple_repeat 1 46 0 200 286 0 99 chr3 59756887 59756978 -167767600 - L2 LINE L2 -4 3268 3187 186 43 0 0 chr3 59760479 59760502 -167764076 + (GGGA)n Simple_repeat Simple_repeat 1 23 0 515 184 0 76 chr3 59763050 59763438 -167761140 + (CA)n Simple_repeat Simple_repeat 1 358 0 270 289 178 0 chr3 59765547 59765682 -167758896 + MIR3 SINE MIR 17 175 -33 911 242 101 20 chr3 59766750 59767106 -167757472 + L1MC4a LINE L1 7424 7808 0 466 301 90 72 chr3 59767121 59767453 -167757125 + L2 LINE L2 2331 2668 -646 186 330 34 11 chr3 59767568 59767656 -167756922 + L2 LINE L2 2965 3054 -218 2048 126 3 0 chr3 59767751 59768045 -167756533 + AluSx SINE Alu 1 295 -17 2515 60 0 0 chr3 59768045 59768346 -167756232 + AluY SINE Alu 1 301 -10 223 253 141 10 chr3 59769012 59769111 -167755467 + MIR3 SINE MIR 9 120 -88 283 289 156 15 chr3 59770501 59770636 -167753942 - MIR SINE MIR -70 192 39 228 35 0 0 chr3 59772658 59772687 -167751891 + (CAGCC)n Simple_repeat Simple_repeat 3 31 0 315 186 17 0 chr3 59772970 59773029 -167751549 - MIR SINE MIR -61 147 88 226 247 91 13 chr3 59773774 59773851 -167750727 - MIR SINE MIR -85 177 95 228 198 10 62 chr3 59774044 59774140 -167750438 + G-rich Low_complexity Low_complexity 6 96 0 400 254 223 45 chr3 59775598 59775818 -167748760 - MIR SINE MIR -2 260 2 522 326 107 8 chr3 59777921 59778005 -167746573 + L1ME4a LINE L1 5510 5584 -537 2269 96 0 0 chr3 59778005 59778298 -167746280 - AluSx SINE Alu -19 293 1 522 326 107 8 chr3 59778298 59778455 -167746123 + L1ME4a LINE L1 5584 5775 -346 2263 115 0 16 chr3 59778463 59778777 -167745801 + AluSq SINE Alu 1 309 -4 268 159 0 0 chr3 59778793 59778837 -167745741 + Alu SINE Alu 1 44 -264 1835 169 7 7 chr3 59778965 59779266 -167745312 - AluJo SINE Alu -11 301 1 237 284 47 27 chr3 59779269 59779417 -167745161 + L1ME4a LINE L1 5910 6060 -61 1971 134 20 3 chr3 59779521 59779827 -167744751 + AluSx SINE Alu 1 311 -1 2538 50 0 0 chr3 59780146 59780447 -167744131 + AluY SINE Alu 1 301 -10 1240 154 43 10 chr3 59780798 59781006 -167743572 - MER20 DNA MER1_type -4 215 1 2250 89 7 7 chr3 59781197 59781500 -167743078 - AluSq SINE Alu -10 303 1 4079 166 40 17 chr3 59781510 59782277 -167742301 - L1MB7 LINE L1 0 6184 5436 2269 105 0 10 chr3 59782277 59782591 -167741987 - AluSx SINE Alu -1 311 1 4079 166 40 17 chr3 59782591 59782679 -167741899 - L1MB7 LINE L1 -748 5436 5352 2066 122 10 3 chr3 59782679 59782983 -167741595 + AluSx SINE Alu 1 306 -6 4079 166 40 17 chr3 59782983 59783075 -167741503 - L1MB7 LINE L1 -832 5352 5208 2157 129 3 0 chr3 59783077 59783388 -167741190 - AluSx SINE Alu 0 312 1 1078 105 0 0 chr3 59783389 59783532 -167741046 - AluSq/x SINE Alu -170 143 1 648 194 28 0 chr3 59783533 59783690 -167740888 - L1MB7 LINE L1 -944 5202 5042 2073 131 0 0 chr3 59783697 59783994 -167740584 - AluJb SINE Alu -15 297 1 2170 104 3 3 chr3 59784848 59785146 -167739432 + AluSg SINE Alu 1 298 -12 2268 104 7 0 chr3 59785554 59785863 -167738715 - AluSq SINE Alu -2 311 1 703 157 0 9 chr3 59786355 59786470 -167738108 - FLAM_A SINE Alu -9 133 20 2241 92 3 0 chr3 59786542 59786834 -167737744 + AluSx SINE Alu 1 293 -19 516 308 114 5 chr3 59787447 59787658 -167736920 + L1M4 LINE L1 5100 5333 -813 1848 142 0 47 chr3 59788050 59788196 -167736382 + AluJo SINE Alu 2 127 -185 2067 137 0 3 chr3 59788196 59788502 -167736076 + AluSx SINE Alu 1 305 -7 1848 142 0 47 chr3 59788502 59788672 -167735906 + AluJo SINE Alu 127 303 -9 649 308 68 4 chr3 59791489 59791723 -167732855 - MIR SINE MIR -13 249 1 2047 134 0 16 chr3 59792670 59792846 -167731732 - AluSx SINE Alu -4 308 138 2499 48 0 0 chr3 59792846 59793160 -167731418 - AluY SINE Alu 0 311 1 2047 134 0 16 chr3 59793160 59793296 -167731282 - AluSx SINE Alu -174 138 1 963 128 0 0 chr3 59793639 59793772 -167730806 + FLAM_C SINE Alu 1 133 0 1773 152 10 24 chr3 59794122 59794418 -167730160 + AluJo SINE Alu 1 292 -20 2043 135 0 3 chr3 59794419 59794715 -167729863 + AluSx SINE Alu 1 295 -17 2308 83 0 3 chr3 59795316 59795616 -167728962 + AluSx SINE Alu 1 299 -13 313 254 123 43 chr3 59798495 59798633 -167725945 + MIR SINE MIR 33 181 -81 332 253 148 10 chr3 59800985 59801128 -167723450 + MIR SINE MIR 3 143 -65 529 262 0 0 chr3 59801133 59801259 -167723319 + HsTC2 DNA Tc2 1 126 -1772 187 333 68 0 chr3 59801558 59801675 -167722903 - L2 LINE L2 -220 3052 2928 713 320 102 31 chr3 59802371 59802967 -167721611 - L1MC/D LINE L1 -679 5485 4972 1934 128 3 23 chr3 59804675 59804980 -167719598 - AluSx SINE Alu -13 299 1 1256 115 78 0 chr3 59804994 59805185 -167719393 - AluSg/x SINE Alu -17 295 90 240 86 0 0 chr3 59805965 59806000 -167718578 + (GGA)n Simple_repeat Simple_repeat 2 36 0 352 96 0 41 chr3 59806042 59806115 -167718463 + (GGA)n Simple_repeat Simple_repeat 1 70 0 744 114 19 0 chr3 59807639 59807744 -167716834 - FLAM_C SINE Alu -36 107 1 222 284 0 0 chr3 59807940 59808100 -167716478 + (CCCCAG)n Simple_repeat Simple_repeat 1 160 0 222 171 0 0 chr3 59811391 59811432 -167713146 + (CTG)n Simple_repeat Simple_repeat 1 41 0 348 244 0 0 chr3 59812886 59812964 -167711614 + MIR SINE MIR 88 165 -97 236 346 87 33 chr3 59812990 59813322 -167711256 - L2 LINE L2 -58 3214 2865 247 284 142 17 chr3 59814934 59815055 -167709523 - MIR SINE MIR -62 146 19 1546 166 107 31 chr3 59815469 59815572 -167709006 - MER2 DNA MER2_type 0 344 250 2024 96 43 0 chr3 59815572 59815854 -167708724 - AluSx SINE Alu -18 294 1 1546 166 107 31 chr3 59815854 59815972 -167708606 - MER2 DNA MER2_type -94 250 142 2055 131 0 0 chr3 59815972 59816277 -167708301 - AluSx SINE Alu -7 305 1 1546 166 107 31 chr3 59816277 59816373 -167708205 - MER2 DNA MER2_type -202 142 2 218 292 173 31 chr3 59817948 59818174 -167706404 + L2 LINE L2 2450 2707 -607 2730 10 0 0 chr3 59818182 59818488 -167706090 + AluYa5 SINE Alu 1 306 -5 1087 138 0 0 chr3 59818489 59818649 -167705929 + AluJo/FRAM SINE Alu 135 294 -18 292 333 107 13 chr3 59818782 59818932 -167705646 + L2 LINE L2 2916 3079 -193 214 245 136 82 chr3 59819279 59819426 -167705152 + MIR3 SINE MIR 19 173 -35 235 226 0 48 chr3 59820046 59820108 -167704470 - L2 LINE L2 -20 3293 3235 188 220 51 0 chr3 59820986 59821045 -167703533 + L2 LINE L2 3030 3091 -181 336 252 34 42 chr3 59822152 59822271 -167702307 + MIR SINE MIR 76 193 -69 2196 114 0 0 chr3 59825612 59825909 -167698669 - AluSx SINE Alu -15 297 1 333 325 87 12 chr3 59825923 59826175 -167698403 + L2 LINE L2 2839 3109 -204 227 290 75 21 chr3 59826984 59827077 -167697501 + MIR3 SINE MIR 70 167 -41 22 0 0 0 chr3 59827078 59827100 -167697478 + AT_rich Low_complexity Low_complexity 1 22 0 2074 127 0 0 chr3 59827104 59827419 -167697159 + AluSx SINE Alu 1 315 0 277 231 149 16 chr3 59828089 59828210 -167696368 + L3b LINE CR1 1255 1391 -192 311 370 10 0 chr3 59829249 59829349 -167695229 - L2 LINE L2 -2 3311 3211 508 56 14 0 chr3 59884068 59884140 -167640438 + THE1A-int LTR MaLR 1508 1580 0 654 14 0 0 chr3 59884140 59884212 -167640366 + THE1A LTR MaLR 1 72 -283 431 94 0 0 chr3 59884216 59884280 -167640298 + Alu SINE Alu 249 312 0 4246 130 23 42 chr3 59884300 59884403 -167640175 + L1MC1 LINE L1 5254 5358 -975 243 0 0 0 chr3 59884403 59884430 -167640148 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 4246 130 23 42 chr3 59884430 59885079 -167639499 + L1MC1 LINE L1 5358 5991 -342 1805 102 4 0 chr3 59885179 59885425 -167639153 - AluSx SINE Alu -65 247 1 1186 247 204 35 chr3 59885484 59886149 -167638429 - HAL1 LINE L1 -1511 996 219 1368 120 0 0 chr3 59886190 59886381 -167638197 - AluSg/x SINE Alu 0 312 122 11564 119 24 31 chr3 59886481 59888837 -167635741 + L1P3 LINE L1 397 2791 -3670 1309 148 14 9 chr3 59888937 59889160 -167635418 - L1MA5 LINE L1 -36 6264 6041 408 133 0 27 chr3 59889158 59889233 -167635345 + L1M1 LINE L1 5358 5430 -870 * 2244 83 0 60 chr3 59889255 59889569 -167635009 + AluY SINE Alu 1 295 -16 322 214 22 0 chr3 59889656 59889745 -167634833 - L1MB3 LINE L1 -1 6182 6092 868 110 129 7 chr3 59889747 59889902 -167634676 - L1MA4A LINE L1 0 6303 6130 2014 159 57 22 chr3 59889902 59890304 -167634274 - L1M2 LINE L1 -4595 2254 1839 23 0 0 0 chr3 59890877 59890900 -167633678 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3 59891658 59891686 -167632892 + AT_rich Low_complexity Low_complexity 1 28 0 2241 98 3 0 chr3 59891752 59892048 -167632530 - AluSx SINE Alu -15 297 1 2121 100 7 17 chr3 59892346 59892646 -167631932 - AluSx SINE Alu -15 297 1 729 171 116 8 chr3 59892648 59892777 -167631801 - AluJo SINE Alu -168 144 2 188 0 0 69 chr3 59892925 59892954 -167631624 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 2061 133 7 0 chr3 59893040 59893333 -167631245 + AluSx SINE Alu 1 295 -17 2158 120 0 0 chr3 59893353 59893659 -167630919 + AluSx SINE Alu 1 306 0 22 0 0 0 chr3 59893710 59893732 -167630846 + AT_rich Low_complexity Low_complexity 1 22 0 532 100 111 22 chr3 59895271 59895361 -167629217 - U6 snRNA snRNA -9 98 1 781 138 17 9 chr3 59895880 59895996 -167628582 - AluJb SINE Alu -194 118 2 1908 150 0 23 chr3 59896906 59897074 -167627504 - AluJb SINE Alu -12 300 141 2468 79 7 0 chr3 59897074 59897379 -167627199 - AluSx SINE Alu -5 307 1 1908 150 0 23 chr3 59897379 59897516 -167627062 - AluJb SINE Alu -171 141 2 397 226 91 67 chr3 59900835 59900879 -167623699 - L1MC5 LINE L1 -36 7925 7884 1837 147 0 29 chr3 59900879 59901185 -167623393 + AluJb SINE Alu 1 297 -15 397 226 91 67 chr3 59901185 59901348 -167623230 - L1MC5 LINE L1 -77 7884 7713 530 280 29 57 chr3 59901402 59901600 -167622978 - L1MC5 LINE L1 -246 7715 7513 2090 127 0 7 chr3 59901600 59901900 -167622678 - AluSx SINE Alu -13 299 2 530 280 29 57 chr3 59901900 59902119 -167622459 - L1MC5 LINE L1 -448 7513 7310 1438 198 75 154 chr3 59902190 59902240 -167622338 - L1MC5 LINE L1 -390 7571 7519 2427 79 3 7 chr3 59902240 59902545 -167622033 - AluSg SINE Alu -6 304 1 1438 198 75 154 chr3 59902545 59902695 -167621883 - L1MC5 LINE L1 -442 7519 7359 1635 186 7 7 chr3 59902695 59903001 -167621577 - AluJb SINE Alu -6 306 1 1438 198 75 154 chr3 59903001 59903563 -167621015 - L1MC5 LINE L1 -602 7359 6921 2252 112 3 3 chr3 59903563 59903866 -167620712 - AluSx SINE Alu -9 303 1 1438 198 75 154 chr3 59903866 59904279 -167620299 - L1MC5 LINE L1 -1040 6921 6477 297 339 65 18 chr3 59906082 59906250 -167618328 - MIR SINE MIR -16 246 71 398 232 89 9 chr3 59906751 59906863 -167617715 - L2 LINE L2 0 3313 3193 1711 170 3 33 chr3 59908214 59908520 -167616058 + AluJo SINE Alu 1 297 -15 2432 90 0 0 chr3 59908620 59908919 -167615659 + AluSq SINE Alu 1 299 -14 640 181 0 6 chr3 59909175 59909424 -167615154 + AluJ SINE Alu 1 305 -7 1426 129 187 21 chr3 59909529 59909805 -167614773 - AluSg SINE Alu 0 316 1 1653 176 28 10 chr3 59909815 59910105 -167614473 - AluJo SINE Alu -17 295 1 600 198 257 0 chr3 59912246 59912448 -167612130 + L1M4c LINE L1 1252 1505 -4879 1941 235 17 10 chr3 59912466 59912879 -167611699 + L1M2 LINE L1 937 1352 -5497 1846 119 3 94 chr3 59912945 59913264 -167611314 + MER1B DNA MER1_type 50 339 0 1901 153 0 53 chr3 59913264 59913587 -167610991 + L1M2 LINE L1 1441 1745 -5104 2221 101 7 0 chr3 59913587 59913874 -167610704 + AluSg SINE Alu 1 289 -21 1901 153 0 53 chr3 59913874 59913909 -167610669 + L1M2 LINE L1 1745 1780 -5069 545 136 0 0 chr3 59914035 59914116 -167610462 + AluY SINE Alu 214 294 -17 2249 114 3 0 chr3 59914134 59914440 -167610138 + AluSx SINE Alu 1 307 -5 2374 256 31 33 chr3 59914440 59914835 -167609743 + L1M4c LINE L1 917 1311 -5071 1481 148 24 136 chr3 59914835 59915174 -167609404 + AluYb8 SINE Alu 3 303 -5 2374 256 31 33 chr3 59915174 59915726 -167608852 + L1M4c LINE L1 1311 1915 -4467 * 2487 199 66 73 chr3 59915725 59916280 -167608298 + L1M4c LINE L1 5 556 -5828 1838 144 10 36 chr3 59916280 59916585 -167607993 + AluJo SINE Alu 3 299 -13 2487 199 66 73 chr3 59916585 59916698 -167607880 + L1M4c LINE L1 556 668 -5716 1413 213 158 52 chr3 59916698 59917272 -167607306 + LTR27 LTR ERV1 2 636 0 7263 153 88 67 chr3 59917294 59917453 -167607125 + L1M4c LINE L1 759 913 -5469 1516 185 31 11 chr3 59917453 59917740 -167606838 + AluJo SINE Alu 1 293 -19 7263 153 88 67 chr3 59917740 59917755 -167606823 + L1M4c LINE L1 913 926 -5456 1714 180 28 3 chr3 59917755 59918044 -167606534 + AluJo SINE Alu 1 296 -16 7263 153 88 67 chr3 59918044 59918101 -167606477 + L1M4c LINE L1 926 980 -5402 1740 146 66 0 chr3 59918101 59918375 -167606203 - AluSx SINE Alu -20 292 1 7263 153 88 67 chr3 59918375 59918784 -167605794 + L1M4c LINE L1 980 1379 -5003 1750 167 11 0 chr3 59918784 59919066 -167605512 + AluSx SINE Alu 1 285 -27 279 0 0 0 chr3 59919066 59919097 -167605481 + (CA)n Simple_repeat Simple_repeat 2 32 0 7263 153 88 67 chr3 59919097 59919449 -167605129 + L1M4c LINE L1 1379 1722 -4660 2112 141 17 6 chr3 59919449 59919796 -167604782 + L1MA7 LINE L1 5941 6291 0 7263 153 88 67 chr3 59919796 59920063 -167604515 + L1M4c LINE L1 1722 1982 -4400 2384 52 0 14 chr3 59920063 59920374 -167604204 + AluY SINE Alu 1 307 0 7263 153 88 67 chr3 59920374 59921149 -167603429 + L1M4c LINE L1 1982 2849 -3533 2404 84 0 3 chr3 59921150 59921449 -167603129 + AluY SINE Alu 1 298 -13 2128 95 10 26 chr3 59921459 59921764 -167602814 + AluSg1 SINE Alu 1 300 -9 2235 113 0 3 chr3 59921764 59922073 -167602505 + AluSg SINE Alu 1 308 -2 3966 176 43 3 chr3 59922073 59922818 -167601760 + L1P LINE L1 3880 4654 -1492 771 160 56 0 chr3 59922819 59922944 -167601634 + FLAM_C SINE Alu 2 133 0 262 232 0 0 chr3 59923002 59923058 -167601520 + L1ME LINE L1 5630 5685 -436 402 109 0 0 chr3 59923108 59923163 -167601415 - Alu SINE Alu -13 299 245 2501 55 6 10 chr3 59924087 59924398 -167600180 + AluY SINE Alu 1 310 -1 231 386 155 7 chr3 59924423 59924700 -167599878 - L2 LINE L2 0 3272 2955 218 299 0 62 chr3 59924793 59924890 -167599688 - L3 LINE CR1 -494 1083 993 837 175 7 0 chr3 59924899 59925036 -167599542 + AluJo SINE Alu 87 224 -88 851 178 0 15 chr3 59925237 59925372 -167599206 + FLAM_A SINE Alu 1 133 0 260 228 158 0 chr3 59928929 59929030 -167595548 + MER103 DNA DNA 8 124 -42 24 0 0 0 chr3 59929854 59929878 -167594700 + AT_rich Low_complexity Low_complexity 1 24 0 2427 66 0 20 chr3 59930480 59930784 -167593794 + AluY SINE Alu 1 298 -13 1882 151 16 13 chr3 59930974 59931279 -167593299 - AluJo SINE Alu -6 306 1 34 55 0 0 chr3 59931474 59931529 -167593049 + AT_rich Low_complexity Low_complexity 1 55 0 1863 147 7 36 chr3 59932796 59933103 -167591475 + AluJb SINE Alu 1 298 -14 4159 189 112 35 chr3 59933108 59933354 -167591224 + L1MB4 LINE L1 4762 4988 -1192 2154 95 0 10 chr3 59933354 59933648 -167590930 + AluSc SINE Alu 1 291 -18 4159 189 112 35 chr3 59933648 59933661 -167590917 + L1MB4 LINE L1 4988 4999 -1181 2300 88 0 7 chr3 59933661 59933958 -167590620 + AluSx SINE Alu 1 295 -17 4159 189 112 35 chr3 59933958 59934206 -167590372 + L1MB4 LINE L1 4999 5226 -954 2255 75 0 0 chr3 59934206 59934517 -167590061 + AluY SINE Alu 1 311 0 4159 189 112 35 chr3 59934517 59935248 -167589330 + L1MB4 LINE L1 5226 6139 -41 2244 76 4 0 chr3 59935248 59935523 -167589055 + AluSx SINE Alu 25 300 -12 4159 189 112 35 chr3 59935523 59935569 -167589009 + L1MB4 LINE L1 6139 6180 0 275 267 0 13 chr3 59935573 59935648 -167588930 - L1MC4a LINE L1 -1885 5923 5850 974 270 32 43 chr3 59935651 59935999 -167588579 - L1MC4a LINE L1 -2016 5792 5449 333 140 0 0 chr3 59936003 59936060 -167588518 + (A)n Simple_repeat Simple_repeat 1 57 0 1680 103 0 63 chr3 59936132 59936385 -167588193 - AluSx SINE Alu -75 237 1 1972 166 0 0 chr3 59936420 59936715 -167587863 - AluSx SINE Alu -17 295 1 691 278 140 53 chr3 59936744 59937326 -167587252 - L1MC4a LINE L1 -813 5333 4803 1860 124 17 40 chr3 59937326 59937625 -167586953 - AluJb SINE Alu -17 295 4 691 278 140 53 chr3 59937625 59937650 -167586928 - L1MC4a LINE L1 -1343 4803 4782 2307 91 0 0 chr3 59937650 59937946 -167586632 - AluY SINE Alu -15 296 1 691 278 140 53 chr3 59937946 59938193 -167586385 - L1MC4a LINE L1 -1364 4782 4403 274 256 77 0 chr3 59938321 59938399 -167586179 - L1MC4a LINE L1 -1983 4163 4080 2176 118 3 16 chr3 59938400 59938713 -167585865 - AluSx SINE Alu -3 309 1 523 194 49 21 chr3 59939123 59939267 -167585311 - L1M4 LINE L1 -1540 4606 4459 723 203 23 0 chr3 59939319 59939452 -167585126 - FLAM_C SINE Alu 0 143 8 2268 100 0 3 chr3 59939479 59939778 -167584800 + AluSc SINE Alu 1 298 -11 2262 95 3 10 chr3 59939782 59940088 -167584490 + AluSc SINE Alu 1 304 -5 1542 174 9 63 chr3 59940175 59940491 -167584087 + AluJo SINE Alu 1 299 -13 310 243 81 52 chr3 59940500 59940636 -167583942 - L1M4 LINE L1 -1865 4281 4142 2024 134 3 13 chr3 59940813 59941112 -167583466 - AluSx SINE Alu -16 296 1 283 194 32 0 chr3 59941478 59941540 -167583038 - MER94 DNA DNA -43 91 28 208 221 299 13 chr3 59941561 59941638 -167582940 + MIR SINE MIR 37 135 -73 2176 114 0 25 chr3 59941714 59942031 -167582547 - AluSx SINE Alu -3 309 1 5091 238 60 45 chr3 59942079 59942510 -167582068 + L1M4 LINE L1 2 425 -6117 1655 188 98 19 chr3 59942510 59942877 -167581701 - MSTD LTR MaLR 0 396 1 5091 238 60 45 chr3 59942877 59943344 -167581234 + L1M4 LINE L1 425 884 -5658 1995 139 0 7 chr3 59943344 59943639 -167580939 - AluJb SINE Alu -19 293 1 5091 238 60 45 chr3 59943639 59943655 -167580923 + L1M4 LINE L1 884 898 -5644 248 0 0 30 chr3 59943655 59943688 -167580890 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 5091 238 60 45 chr3 59943688 59943967 -167580611 + L1M4 LINE L1 898 1171 -5371 1684 143 38 31 chr3 59943967 59944254 -167580324 - AluSx SINE Alu -23 289 1 5091 238 60 45 chr3 59944254 59944651 -167579927 + L1M4 LINE L1 1171 1618 -4924 437 257 9 44 chr3 59944669 59944782 -167579796 + AluJb SINE Alu 99 207 -105 400 259 78 30 chr3 59944784 59944950 -167579628 + L2 LINE L2 3135 3308 -5 2094 142 0 0 chr3 59945589 59945898 -167578680 + AluSx SINE Alu 1 309 -3 1474 271 117 24 chr3 59946016 59946841 -167577737 + L2 LINE L2 2400 3312 -1 257 294 119 32 chr3 59946840 59946966 -167577612 - MIR3 SINE MIR -71 137 1 * 286 263 32 32 chr3 59947010 59947105 -167577473 - L2 LINE L2 0 3272 3178 1810 121 16 63 chr3 59947758 59948073 -167576505 + AluJo SINE Alu 12 311 -1 1621 203 10 0 chr3 59948399 59948705 -167575873 + AluJo SINE Alu 1 309 -3 276 320 109 0 chr3 59948939 59949086 -167575492 + MIR SINE MIR 51 213 -49 21 36 0 0 chr3 59949154 59949182 -167575396 + AT_rich Low_complexity Low_complexity 1 28 0 415 232 53 0 chr3 59949450 59949545 -167575033 - MER91B DNA MER1_type -1 189 90 2273 110 7 0 chr3 59949658 59949968 -167574610 - AluSx SINE Alu 0 312 1 1674 181 28 0 chr3 59949968 59950256 -167574322 - AluJo SINE Alu -16 296 1 2049 63 89 15 chr3 59950567 59950837 -167573741 + AluY SINE Alu 5 294 -17 1948 172 39 3 chr3 59952456 59952787 -167571791 - MER2 DNA MER2_type 0 344 2 2437 70 0 32 chr3 59952832 59952977 -167571601 + AluSq SINE Alu 1 149 -164 2274 86 10 0 chr3 59952977 59953267 -167571311 + AluSp SINE Alu 1 293 -20 2437 70 0 32 chr3 59953267 59953434 -167571144 + AluSq SINE Alu 149 303 -10 266 252 59 5 chr3 59953600 59953707 -167570871 + MIR3 SINE MIR 72 186 -22 746 284 80 0 chr3 59954921 59955146 -167569432 + MIR SINE MIR 2 244 -18 2455 59 0 0 chr3 59955324 59955614 -167568964 - AluY SINE Alu -21 290 1 399 208 27 94 chr3 59956320 59956469 -167568109 - MER5B DNA MER1_type 0 178 40 25 31 0 0 chr3 59956739 59956771 -167567807 + AT_rich Low_complexity Low_complexity 1 32 0 2120 152 0 0 chr3 59957155 59957465 -167567113 + AluSx SINE Alu 1 310 -2 517 192 91 0 chr3 59957753 59957852 -167566726 + FRAM SINE Alu 57 164 -12 409 211 26 0 chr3 59957860 59957936 -167566642 - MLT1-int LTR MaLR -507 864 787 5279 129 92 18 chr3 59958042 59958920 -167565658 + L1M1 LINE L1 16 958 -6607 2693 55 0 0 chr3 59958953 59959262 -167565316 - AluSc SINE Alu 0 309 1 3720 155 67 3 chr3 59959262 59960058 -167564520 + L1M1 LINE L1 6055 6905 -743 2031 91 3 14 chr3 59960049 59960335 -167564243 + L1PA13 LINE L1 1448 1730 -5057 * 13494 175 35 62 chr3 59960331 59961240 -167563338 + L1PA13 LINE L1 2258 3189 -3608 703 211 0 0 chr3 59961240 59961354 -167563224 + FLAM_C SINE Alu 3 116 -27 13494 175 35 62 chr3 59961354 59961883 -167562695 + L1PA13 LINE L1 3189 3730 -3067 1605 181 57 4 chr3 59961883 59962164 -167562414 + AluSx SINE Alu 1 296 -16 13494 175 35 62 chr3 59962164 59962988 -167561590 + L1PA13 LINE L1 3730 4574 -2223 2272 97 7 16 chr3 59962988 59963297 -167561281 + AluSx SINE Alu 1 306 -6 2235 85 7 26 chr3 59963297 59963602 -167560976 + AluSg SINE Alu 3 301 -9 2218 108 0 3 chr3 59963602 59963907 -167560671 + AluSg SINE Alu 1 304 -6 13494 175 35 62 chr3 59963907 59964657 -167559921 + L1PA13 LINE L1 4571 5305 -1492 771 160 56 0 chr3 59964658 59964783 -167559795 + FLAM_C SINE Alu 2 133 0 262 232 0 0 chr3 59964841 59964897 -167559681 + L1ME LINE L1 5630 5685 -436 1516 142 4 9 chr3 59964947 59965173 -167559405 - AluSg/x SINE Alu -13 299 75 866 128 0 0 chr3 59965279 59965396 -167559182 + AluSg/x SINE Alu 178 294 -18 2448 78 0 0 chr3 59965801 59966095 -167558483 - AluSc SINE Alu -15 294 1 21 0 0 0 chr3 59966170 59966191 -167558387 + AT_rich Low_complexity Low_complexity 1 21 0 1457 165 55 16 chr3 59966475 59966730 -167557848 - MER44D DNA MER2_type 0 605 469 806 200 0 14 chr3 59966730 59966875 -167557703 - FLAM_C SINE Alu 0 143 1 2676 132 73 37 chr3 59966876 59967340 -167557238 - MER44D DNA MER2_type -222 483 3 3807 171 56 64 chr3 59967945 59968870 -167555708 + L1MB8 LINE L1 4777 5708 -470 302 44 0 22 chr3 59968870 59968915 -167555663 + (TA)n Simple_repeat Simple_repeat 2 45 0 3807 171 56 64 chr3 59968915 59969329 -167555249 + L1MB8 LINE L1 5708 6110 -68 2150 100 28 0 chr3 59969329 59969619 -167554959 - AluSg SINE Alu -12 298 1 3807 171 56 64 chr3 59969619 59969682 -167554896 + L1MB8 LINE L1 6110 6172 -6 207 0 0 0 chr3 59969726 59969749 -167554829 + (CAA)n Simple_repeat Simple_repeat 2 24 0 310 193 18 0 chr3 59970147 59970204 -167554374 - MIR SINE MIR -21 241 184 193 208 222 28 chr3 59970288 59970360 -167554218 - MIR SINE MIR -8 254 169 488 224 33 93 chr3 59970880 59971063 -167553515 + LTR67 LTR ERVL 352 523 -34 2156 110 6 22 chr3 59971492 59971809 -167552769 + AluSx SINE Alu 1 312 0 248 330 148 6 chr3 59972048 59972224 -167552354 - MIR SINE MIR -3 259 59 223 280 13 40 chr3 59972330 59972377 -167552201 - L2 LINE L2 0 3313 3269 1006 223 58 0 chr3 59972377 59972601 -167551977 + MIR SINE MIR 1 237 -25 197 250 19 19 chr3 59972569 59972621 -167551957 + L2 LINE L2 3210 3261 -11 * 760 102 19 0 chr3 59972785 59972893 -167551685 + L1MA3 LINE L1 6196 6305 0 2414 93 0 0 chr3 59973515 59973815 -167550763 + AluSq SINE Alu 1 300 -13 2129 108 0 14 chr3 59973820 59974117 -167550461 + AluSc SINE Alu 1 293 -16 2102 141 0 0 chr3 59974129 59974427 -167550151 + AluSx SINE Alu 1 298 -14 2285 114 3 0 chr3 59974721 59975029 -167549549 + AluSq SINE Alu 1 309 -4 2305 95 7 0 chr3 59975043 59975337 -167549241 + AluSg SINE Alu 1 296 -14 1027 171 52 43 chr3 59976219 59976430 -167548148 - AluJo SINE Alu -30 282 70 3432 137 56 17 chr3 59976475 59977065 -167547513 - L1MB3 LINE L1 0 6183 5571 2228 117 0 10 chr3 59977795 59978102 -167546476 + AluSx SINE Alu 1 304 -8 2230 146 39 73 chr3 59978147 59978200 -167546378 + L1MB3 LINE L1 5731 5784 -399 845 168 0 0 chr3 59978200 59978325 -167546253 + FLAM_A SINE Alu 5 129 -4 2230 146 39 73 chr3 59978325 59978738 -167545840 + L1MB3 LINE L1 5784 6181 -2 2089 143 0 0 chr3 59978882 59979183 -167545395 - AluSx SINE Alu -11 301 1 2392 77 0 26 chr3 59979194 59979506 -167545072 - AluSp SINE Alu -9 304 1 1824 118 68 7 chr3 59979826 59980105 -167544473 - AluSg SINE Alu -14 296 1 1398 190 0 8 chr3 59980865 59981107 -167543471 - AluJo SINE Alu -42 270 31 299 191 22 22 chr3 59981506 59981595 -167542983 + (TA)n Simple_repeat Simple_repeat 1 89 0 207 0 0 0 chr3 59981603 59981626 -167542952 + (TCTA)n Simple_repeat Simple_repeat 4 26 0 2228 111 0 0 chr3 59981627 59981916 -167542662 - AluSx SINE Alu -23 289 1 2226 116 3 0 chr3 59982118 59982428 -167542150 - AluSx SINE Alu -1 311 1 622 299 82 42 chr3 59982442 59982843 -167541735 - L2 LINE L2 -5 3308 2892 2497 73 0 22 chr3 59983648 59983964 -167540614 + AluSc SINE Alu 1 309 0 503 290 72 96 chr3 59984609 59984880 -167539698 + L1MEd LINE L1 849 1125 -5247 2307 94 0 3 chr3 59984880 59985178 -167539400 + AluY SINE Alu 1 297 -14 965 214 0 0 chr3 59985178 59985361 -167539217 + FAM SINE Alu 1 47 0 503 290 72 96 chr3 59985361 59985556 -167539022 + L1MEd LINE L1 1124 1305 -5067 2247 98 7 0 chr3 59985556 59985861 -167538717 + AluSx SINE Alu 2 308 -4 503 290 72 96 chr3 59985861 59985943 -167538635 + L1MEd LINE L1 1305 1387 -4985 242 302 50 16 chr3 59985949 59986202 -167538376 + L1MEd LINE L1 1290 1761 -982 1596 197 7 30 chr3 59986270 59986565 -167538013 - AluJo SINE Alu -24 288 1 2205 130 26 32 chr3 59986581 59986920 -167537658 + MER1B DNA MER1_type 1 337 0 639 256 0 0 chr3 59987237 59987358 -167537220 + FLAM_A SINE Alu 2 122 -11 2176 92 24 3 chr3 59987361 59987653 -167536925 + AluSx SINE Alu 1 298 -14 1946 148 7 3 chr3 59987711 59988009 -167536569 + AluJb SINE Alu 1 299 -13 423 238 85 123 chr3 59988010 59988571 -167536007 + L1M4 LINE L1 4744 5324 -822 2256 110 23 0 chr3 59988571 59988870 -167535708 + AluSq SINE Alu 1 306 -7 960 143 0 0 chr3 59988878 59989011 -167535567 + FLAM_A SINE Alu 1 133 0 423 238 85 123 chr3 59989011 59989109 -167535469 + L1M4 LINE L1 5331 5387 -759 1889 159 0 3 chr3 59989113 59989409 -167535169 + AluJb SINE Alu 1 295 -17 22 0 0 0 chr3 59989748 59989770 -167534808 + AT_rich Low_complexity Low_complexity 1 22 0 224 62 0 104 chr3 59989883 59989931 -167534647 + (A)n Simple_repeat Simple_repeat 1 43 0 521 187 127 15 chr3 59990617 59990751 -167533827 - MER105 DNA DNA -46 158 10 29 0 0 0 chr3 59990777 59990806 -167533772 + AT_rich Low_complexity Low_complexity 1 29 0 517 200 146 0 chr3 59990838 59990968 -167533610 - L1MC4 LINE L1 -142 7900 7752 256 224 0 17 chr3 59990978 59991036 -167533542 + Tigger2 DNA MER2_type 27 83 -2635 831 211 29 0 chr3 59991819 59991990 -167532588 + FAM SINE Alu 1 45 -4 337 258 320 37 chr3 59991993 59992315 -167532263 + MLT1J LTR MaLR 99 511 0 297 308 22 11 chr3 59992585 59992676 -167531902 + MIR SINE MIR 10 101 -161 2181 177 69 31 chr3 59993057 59993538 -167531040 - MLT1D LTR MaLR -6 499 1 2355 96 3 10 chr3 59993580 59993894 -167530684 - AluSp SINE Alu -1 312 1 2473 78 0 13 chr3 59994078 59994386 -167530192 - AluSq SINE Alu -7 306 3 24 0 0 0 chr3 59994491 59994515 -167530063 + AT_rich Low_complexity Low_complexity 1 24 0 2362 105 0 10 chr3 59994529 59994835 -167529743 + AluSx SINE Alu 1 303 -9 450 167 42 120 chr3 59994843 59994912 -167529666 + L1M4 LINE L1 3070 3143 -3003 2033 148 3 0 chr3 59994912 59995203 -167529375 + AluSx SINE Alu 1 292 -20 450 167 42 120 chr3 59995203 59995342 -167529236 + L1M4 LINE L1 3143 3263 -2883 2215 87 30 20 chr3 59995342 59995640 -167528938 + AluSp SINE Alu 1 301 -12 929 126 0 15 chr3 59995650 59995785 -167528793 + FLAM_C SINE Alu 1 133 0 228 182 0 0 chr3 59995786 59995830 -167528748 + (TA)n Simple_repeat Simple_repeat 2 45 0 296 194 51 10 chr3 59995894 59995992 -167528586 + (TA)n Simple_repeat Simple_repeat 2 103 0 657 180 18 0 chr3 59996012 59996123 -167528455 + AluJb SINE Alu 185 297 -15 2285 196 54 9 chr3 59996140 59996676 -167527902 + L1M4 LINE L1 3253 3812 -2334 475 171 0 0 chr3 59996693 59996775 -167527803 - L1 LINE L1 -2038 4108 4027 883 210 26 0 chr3 59996776 59996971 -167527607 + L1M4 LINE L1 4753 4952 -1194 2778 58 0 0 chr3 59996976 59997287 -167527291 + AluYa5 SINE Alu 1 311 0 2339 86 26 3 chr3 59997438 59997741 -167526837 - AluSq SINE Alu -3 310 1 2147 111 37 0 chr3 59998599 59998896 -167525682 - AluSg SINE Alu -2 308 1 1920 140 14 4 chr3 59999135 59999413 -167525165 + AluSx SINE Alu 1 281 -31 242 200 29 14 chr3 59999433 59999503 -167525075 + L1M4 LINE L1 2220 2290 -3856 1914 148 30 3 chr3 59999503 59999807 -167524771 + AluJb SINE Alu 1 312 0 323 245 189 42 chr3 59999827 60000133 -167524445 + L1M4 LINE L1 2272 2622 -3524 391 100 33 0 chr3 60000144 60000204 -167524374 - MLT1D LTR MaLR -1 504 443 726 160 0 8 chr3 60000215 60000340 -167524238 + FLAM_C SINE Alu 13 136 -7 928 150 20 0 chr3 60000340 60000493 -167524085 - FRAM SINE Alu -25 151 1 571 157 0 0 chr3 60000526 60000615 -167523963 + AluJb SINE Alu 168 256 -56 301 282 24 40 chr3 60000627 60000751 -167523827 + L1M4 LINE L1 3151 3272 -2874 1824 128 47 15 chr3 60000799 60001073 -167523505 + AluSp SINE Alu 1 283 -30 1878 141 0 24 chr3 60001187 60001478 -167523100 + AluJo SINE Alu 13 296 -16 1902 95 0 0 chr3 60001479 60001720 -167522858 + AluSg SINE Alu 63 303 -7 231 247 157 0 chr3 60001749 60001838 -167522740 + L1M4 LINE L1 3552 3654 -2492 343 282 127 48 chr3 60001929 60002103 -167522475 + L1M4 LINE L1 3824 3983 -2163 2144 108 3 58 chr3 60002103 60002428 -167522150 - AluSq SINE Alu -6 307 1 1515 216 0 3 chr3 60002428 60002720 -167521858 - AluJb SINE Alu -17 295 5 343 282 127 48 chr3 60002720 60002874 -167521704 + L1M4 LINE L1 3982 4179 -1967 290 246 97 29 chr3 60003015 60003190 -167521388 + MIR SINE MIR 32 218 -44 367 140 6 3 chr3 60003198 60003268 -167521310 - Alu SINE Alu -3 297 243 2329 97 10 3 chr3 60003290 60003601 -167520977 - AluSq SINE Alu 0 313 1 28 0 0 0 chr3 60003731 60003759 -167520819 + AT_rich Low_complexity Low_complexity 1 28 0 1913 150 0 3 chr3 60003906 60004192 -167520386 + AluSg SINE Alu 1 285 -25 2350 100 0 0 chr3 60004674 60004974 -167519604 - AluSc SINE Alu -9 300 1 21 0 0 0 chr3 60005030 60005051 -167519527 + AT_rich Low_complexity Low_complexity 1 21 0 4070 171 28 58 chr3 60005259 60006131 -167518447 + L1MB3 LINE L1 5287 6133 -50 1946 131 0 42 chr3 60006131 60006444 -167518134 + AluSx SINE Alu 1 300 -12 4070 171 28 58 chr3 60006444 60006470 -167518108 + L1MB3 LINE L1 6133 6158 -25 1359 170 101 25 chr3 60006553 60006829 -167517749 - AluJo SINE Alu -15 297 1 432 154 0 0 chr3 60007006 60007071 -167517507 + L1M3 LINE L1 5664 5728 -443 21 0 0 0 chr3 60007397 60007418 -167517160 + AT_rich Low_complexity Low_complexity 1 21 0 1000 196 0 6 chr3 60007420 60007599 -167516979 + AluSg/x SINE Alu 118 295 -15 914 134 0 15 chr3 60007807 60007941 -167516637 - FLAM_C SINE Alu 0 133 2 26 0 0 0 chr3 60008201 60008227 -167516351 + AT_rich Low_complexity Low_complexity 1 26 0 1090 173 61 5 chr3 60008573 60008770 -167515808 + MER3 DNA MER1_type 1 208 -1 1962 153 0 3 chr3 60010359 60010653 -167513925 + AluJb SINE Alu 1 293 -19 266 107 93 0 chr3 60010655 60010730 -167513848 + (TA)n Simple_repeat Simple_repeat 2 83 0 2320 99 0 10 chr3 60013253 60013555 -167511023 + AluSq SINE Alu 1 299 -14 585 253 136 14 chr3 60015298 60015519 -167509059 + MIR SINE MIR 12 259 -3 1069 176 0 0 chr3 60015824 60015989 -167508589 - FAM SINE Alu -10 165 1 237 320 109 0 chr3 60016044 60016191 -167508387 + MIR SINE MIR 51 213 -49 21 36 0 0 chr3 60016259 60016287 -167508291 + AT_rich Low_complexity Low_complexity 1 28 0 384 232 53 0 chr3 60016555 60016650 -167507928 - MER91B DNA MER1_type -1 189 90 2292 110 7 0 chr3 60016763 60017073 -167507505 - AluSx SINE Alu 0 312 1 1697 181 28 0 chr3 60017073 60017361 -167507217 - AluJo SINE Alu -16 296 1 2535 67 0 0 chr3 60017672 60017971 -167506607 + AluY SINE Alu 5 303 -8 2068 121 0 24 chr3 60018306 60018603 -167505975 - AluSx SINE Alu -18 294 5 276 234 52 13 chr3 60018645 60018722 -167505856 + L1M4 LINE L1 5004 5083 -1063 822 167 35 17 chr3 60018731 60018905 -167505673 + L1MB8 LINE L1 6002 6178 0 2271 92 0 0 chr3 60019165 60019476 -167505102 - AluY SINE Alu 0 311 1 1477 201 28 10 chr3 60019478 60019767 -167504811 - AluJo SINE Alu -18 294 1 187 54 54 27 chr3 60019785 60019822 -167504756 + T-rich Low_complexity Low_complexity 5 42 0 1906 148 32 0 chr3 60019826 60020104 -167504474 - AluJb SINE Alu -24 288 2 24 0 0 0 chr3 60020284 60020308 -167504270 + AT_rich Low_complexity Low_complexity 1 24 0 2292 113 3 0 chr3 60020481 60020790 -167503788 + AluSq SINE Alu 1 310 -3 2503 58 6 10 chr3 60021753 60022064 -167502514 + AluY SINE Alu 1 310 -1 194 391 11 0 chr3 60022274 60022366 -167502212 - L2 LINE L2 -225 3047 2955 202 289 0 62 chr3 60022459 60022556 -167502022 - L3 LINE CR1 -494 1083 993 783 175 7 0 chr3 60022565 60022702 -167501876 + AluJo SINE Alu 87 224 -88 796 178 0 15 chr3 60022900 60023035 -167501543 + FLAM_A SINE Alu 1 133 0 2260 112 0 0 chr3 60024375 60024669 -167499909 + AluSg SINE Alu 1 294 -16 2270 78 18 3 chr3 60024784 60025086 -167499492 + AluSq SINE Alu 1 306 0 340 299 102 43 chr3 60025115 60025557 -167499021 + L1M4 LINE L1 3366 3833 -2313 1902 169 7 0 chr3 60025856 60026158 -167498420 + AluJb SINE Alu 4 307 -5 22 0 0 0 chr3 60026582 60026604 -167497974 + AT_rich Low_complexity Low_complexity 1 22 0 697 179 0 0 chr3 60026673 60026790 -167497788 + FLAM_C SINE Alu 10 126 -17 2107 123 7 3 chr3 60027180 60027481 -167497097 - AluSx SINE Alu -10 302 1 2578 66 0 0 chr3 60027488 60027793 -167496785 - AluY SINE Alu -6 305 1 1403 157 9 144 chr3 60027954 60028250 -167496328 + L1MC3 LINE L1 5514 5848 -336 2003 138 24 0 chr3 60028250 60028539 -167496039 + AluSx SINE Alu 1 296 -16 1403 157 9 144 chr3 60028539 60028630 -167495948 + L1MC3 LINE L1 5848 5950 -234 1514 142 51 54 chr3 60028630 60028925 -167495653 + AluJo SINE Alu 1 294 -18 1403 157 9 144 chr3 60028925 60029704 -167494874 + L1MC3 LINE L1 5949 5793 -391 2249 103 0 41 chr3 60029013 60029158 -167495420 + AluSp SINE Alu 1 150 -163 2443 74 0 7 chr3 60029158 60029457 -167495121 + AluY SINE Alu 1 297 -14 2249 103 0 41 chr3 60029457 60029631 -167494947 + AluSp SINE Alu 150 307 -6 1254 168 50 21 chr3 60029631 60029793 -167494785 + L1MB7 LINE L1 5885 6058 -126 1248 146 0 10 chr3 60030398 60030603 -167493975 + L1M3 LINE L1 5585 5787 -393 2080 150 0 0 chr3 60030604 60030898 -167493680 + AluSx SINE Alu 2 295 -17 1651 209 0 0 chr3 60031044 60031327 -167493251 - AluJb SINE Alu -27 285 3 1851 135 4 4 chr3 60032481 60032747 -167491831 + AluSg SINE Alu 1 266 -44 185 0 40 0 chr3 60033156 60033181 -167491397 + (CCAA)n Simple_repeat Simple_repeat 4 29 0 1971 128 10 26 chr3 60036899 60037204 -167487374 - AluSx SINE Alu -12 300 1 1492 189 7 34 chr3 60043307 60043603 -167480975 - AluJo SINE Alu -22 290 3 1665 215 63 43 chr3 60044049 60044537 -167480041 + MLT1D LTR MaLR 1 498 -7 1631 61 0 0 chr3 60046544 60046742 -167477836 + AluY SINE Alu 1 198 -113 386 189 144 0 chr3 60046864 60046954 -167477624 + MLT1A2 LTR MaLR 1 103 -287 1975 197 8 6 chr3 60046954 60047310 -167477268 - MLT1A1 LTR MaLR 0 365 9 810 230 68 40 chr3 60047286 60047538 -167477040 + MLT1A2 LTR MaLR 86 344 -30 * 866 254 56 77 chr3 60047652 60048397 -167476181 - L1MC4 LINE L1 -140 7902 7149 253 298 93 71 chr3 60048945 60049170 -167475408 + MIR SINE MIR 13 242 -20 211 296 25 12 chr3 60049709 60049790 -167474788 - MIR SINE MIR -94 114 33 29 0 0 0 chr3 60049929 60049958 -167474620 + AT_rich Low_complexity Low_complexity 1 29 0 1293 163 37 19 chr3 60050417 60050632 -167473946 - MER20 DNA MER1_type 0 219 1 886 189 153 65 chr3 60056606 60056839 -167467739 - L1ME2 LINE L1 -9 6155 5893 2454 87 0 0 chr3 60056839 60057137 -167467441 - AluSc SINE Alu -10 299 2 886 189 153 65 chr3 60057137 60057178 -167467400 - L1ME2 LINE L1 -271 5893 5857 1083 241 44 3 chr3 60057201 60057352 -167467226 - L1ME2 LINE L1 -1201 4945 4802 2106 87 21 11 chr3 60057352 60057638 -167466940 - AluSx SINE Alu -23 289 1 1083 241 44 3 chr3 60057638 60057781 -167466797 - L1ME2 LINE L1 -1344 4802 4639 498 164 170 69 chr3 60058257 60058416 -167466162 + MER5A DNA MER1_type 13 187 -2 913 296 68 38 chr3 60058661 60059114 -167465464 + L2 LINE L2 2847 3313 0 792 249 18 51 chr3 60059166 60059259 -167465319 + MER58C DNA MER1_type 6 100 -2320 2257 101 0 7 chr3 60059259 60059556 -167465022 - AluSx SINE Alu -17 295 1 792 249 18 51 chr3 60059556 60059679 -167464899 + MER58C DNA MER1_type 100 215 0 1074 215 78 23 chr3 60060279 60060459 -167464119 + MER5C DNA MER1_type 1 206 -118 2229 107 3 13 chr3 60060459 60060767 -167463811 - AluSx SINE Alu -7 305 1 1074 215 78 23 chr3 60060767 60060893 -167463685 + MER5C DNA MER1_type 206 324 0 1761 113 27 0 chr3 60060944 60061201 -167463377 - AluSg SINE Alu -8 302 39 188 332 171 58 chr3 60062695 60062969 -167461609 - L3 LINE CR1 -1232 345 41 1531 154 10 67 chr3 60063226 60063544 -167461034 + AluJb SINE Alu 1 301 0 938 286 53 69 chr3 60063606 60064039 -167460539 + LTR16A LTR ERVL 25 450 0 712 202 16 0 chr3 60065440 60065569 -167459009 - MIR SINE MIR -72 190 60 2219 131 5 70 chr3 60067152 60067293 -167457285 + L1P4 LINE L1 5353 5502 -666 2297 96 0 0 chr3 60067293 60067585 -167456993 + AluSx SINE Alu 3 294 -18 2219 131 5 70 chr3 60067585 60067841 -167456737 + L1P4 LINE L1 5502 5724 -444 1022 103 7 7 chr3 60067970 60068115 -167456463 + AluY SINE Alu 144 288 -23 292 22 44 0 chr3 60068118 60068163 -167456415 + (CAA)n Simple_repeat Simple_repeat 2 48 0 1514 191 48 61 chr3 60068663 60069001 -167455577 + MLT1B LTR MaLR 1 335 -55 2312 118 47 0 chr3 60069001 60069323 -167455255 + MER1B DNA MER1_type 1 337 0 1514 191 48 61 chr3 60069323 60069377 -167455201 + MLT1B LTR MaLR 335 388 -2 231 167 0 0 chr3 60070083 60070125 -167454453 + (TA)n Simple_repeat Simple_repeat 1 42 0 1851 98 60 4 chr3 60070282 60070548 -167454030 - MER1B DNA MER1_type 0 339 59 490 143 9 80 chr3 60070559 60070671 -167453907 + L1MB8 LINE L1 4957 5060 -1086 1880 171 78 3 chr3 60070680 60071025 -167453553 + L1MB8 LINE L1 5710 6080 -98 1388 234 79 48 chr3 60071070 60071294 -167453284 + MLT1E LTR MaLR 134 349 -244 2282 150 19 6 chr3 60071294 60071654 -167452924 + MLT1A1 LTR MaLR 1 365 0 1388 234 79 48 chr3 60071654 60071870 -167452708 + MLT1E LTR MaLR 349 588 -5 252 0 0 0 chr3 60072102 60072130 -167452448 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 338 236 0 0 chr3 60073497 60073569 -167451009 + MIR SINE MIR 74 145 -117 4283 231 122 85 chr3 60073941 60074744 -167449834 + HAL1 LINE L1 122 893 -1614 1950 106 32 3 chr3 60074744 60075026 -167449552 + AluSq SINE Alu 22 311 -2 4283 231 122 85 chr3 60075026 60075800 -167448778 + HAL1 LINE L1 893 1637 -870 2143 115 3 0 chr3 60075800 60076121 -167448457 + AluSq SINE Alu 1 322 0 4283 231 122 85 chr3 60076121 60076376 -167448202 + HAL1 LINE L1 1637 1881 -626 2119 114 0 0 chr3 60076376 60076677 -167447901 + AluSx SINE Alu 2 302 0 4283 231 122 85 chr3 60076677 60077132 -167447446 + HAL1 LINE L1 1881 2501 -6 300 224 15 15 chr3 60078724 60078791 -167445787 + L2 LINE L2 3205 3271 -1 744 278 12 0 chr3 60079348 60079521 -167445057 + MER115 DNA AcHobo 516 690 -3 342 277 20 10 chr3 60079981 60080082 -167444496 - L1MC4 LINE L1 -1326 6716 6615 * 343 300 0 0 chr3 60080007 60080097 -167444481 + L1MC4 LINE L1 6614 6703 -1339 1805 159 0 29 chr3 60080105 60080414 -167444164 - AluJo SINE Alu -12 300 1 531 261 0 8 chr3 60080415 60080545 -167444033 - MIR SINE MIR -102 160 32 2280 82 3 0 chr3 60080646 60080948 -167443630 - AluSp SINE Alu 0 303 1 2182 123 0 13 chr3 60082967 60083306 -167441272 + AluSx SINE Alu 1 312 0 2140 130 0 19 chr3 60084040 60084347 -167440231 + AluSx SINE Alu 3 303 -9 334 291 96 54 chr3 60084376 60084740 -167439838 - L1ME4a LINE L1 -50 6071 5694 205 237 34 17 chr3 60085018 60085077 -167439501 - L2 LINE L2 0 3272 3213 1337 169 135 0 chr3 60085159 60085639 -167438939 + L1M4 LINE L1 4994 5538 -646 229 192 39 19 chr3 60086003 60086055 -167438523 - Charlie8 DNA MER1_type -2307 110 58 3150 217 61 104 chr3 60086582 60086699 -167437879 - L1MC5 LINE L1 -31 7930 7809 1274 204 9 5 chr3 60086699 60086919 -167437659 + MER58A DNA MER1_type 4 224 0 3150 217 61 104 chr3 60086919 60088180 -167436398 - L1MC5 LINE L1 -152 7809 6612 1776 65 9 0 chr3 60088332 60088548 -167436030 - AluY SINE Alu -93 218 1 420 289 175 60 chr3 60088761 60088993 -167435585 - L1MC4a LINE L1 -1539 6269 6065 2275 98 0 0 chr3 60088993 60089288 -167435290 - AluSg SINE Alu -15 295 1 420 289 175 60 chr3 60089288 60089473 -167435105 - L1MC4a LINE L1 -1743 6065 5804 320 294 68 34 chr3 60089474 60089709 -167434869 - L1M4 LINE L1 -3774 2372 2130 587 316 79 35 chr3 60090058 60090602 -167433976 - HAL1b LINE L1 -478 870 303 2011 130 0 7 chr3 60090718 60091002 -167433576 + AluSx SINE Alu 19 300 -12 27 0 0 0 chr3 60091336 60091363 -167433215 + AT_rich Low_complexity Low_complexity 1 27 0 3558 202 106 7 chr3 60091658 60091937 -167432641 + L1MC4 LINE L1 6765 7015 -1027 186 103 0 0 chr3 60091937 60091966 -167432612 + (CATA)n Simple_repeat Simple_repeat 4 32 0 3558 202 106 7 chr3 60091966 60092517 -167432061 + L1MC4 LINE L1 7015 7677 -365 711 150 17 0 chr3 60092575 60092695 -167431883 + L1MC4 LINE L1 7542 7663 -379 2392 91 3 3 chr3 60092720 60093029 -167431549 + AluSx SINE Alu 1 309 -3 1528 174 35 11 chr3 60093036 60093323 -167431255 + AluJo SINE Alu 1 294 -18 708 201 0 14 chr3 60093389 60093528 -167431050 + FLAM_A SINE Alu 6 142 0 764 224 59 41 chr3 60093611 60093901 -167430677 + L1MC4 LINE L1 7748 8042 0 2051 108 0 7 chr3 60093930 60094225 -167430353 - AluSx SINE Alu -17 295 3 3465 200 79 92 chr3 60095375 60095428 -167429150 + L1MC4a LINE L1 6339 6391 -1417 396 250 23 16 chr3 60095428 60095556 -167429022 - MER94 DNA DNA -1 133 5 3465 200 79 92 chr3 60095556 60095773 -167428805 + L1MC4a LINE L1 6391 6609 -1199 186 43 0 0 chr3 60095773 60095796 -167428782 + (TGGA)n Simple_repeat Simple_repeat 3 25 0 3465 200 79 92 chr3 60095796 60095922 -167428656 + L1MC4a LINE L1 6609 6735 -1073 2184 113 0 3 chr3 60095922 60096233 -167428345 - AluSq SINE Alu -3 310 1 1540 181 50 0 chr3 60096235 60096516 -167428062 - AluJb SINE Alu -17 295 1 3465 200 79 92 chr3 60096516 60096938 -167427640 + L1MC4a LINE L1 6736 7143 -665 2228 76 6 19 chr3 60096938 60097253 -167427325 + AluY SINE Alu 1 311 0 3465 200 79 92 chr3 60097253 60097677 -167426901 + L1MC4a LINE L1 7143 7571 -237 368 151 81 23 chr3 60097675 60097761 -167426817 + L1ME LINE L1 306 396 -5674 * 1051 252 159 49 chr3 60097759 60098188 -167426390 - L1ME3A LINE L1 -159 6011 5631 1975 142 0 0 chr3 60098188 60098483 -167426095 - AluSx SINE Alu -17 295 1 1051 252 159 49 chr3 60098483 60098524 -167426054 - L1ME3A LINE L1 -539 5631 5596 2374 72 0 0 chr3 60098524 60098828 -167425750 - AluY SINE Alu -7 304 1 1051 252 159 49 chr3 60098828 60099146 -167425432 - L1ME3A LINE L1 -574 5596 5314 2132 113 0 0 chr3 60099146 60099446 -167425132 - AluSx SINE Alu -12 300 1 1051 252 159 49 chr3 60099446 60099633 -167424945 - L1ME3A LINE L1 -856 5314 4914 617 268 88 39 chr3 60099693 60100039 -167424539 - L1ME3A LINE L1 -1334 4812 4441 1373 174 10 54 chr3 60100039 60100373 -167424205 - AluJo SINE Alu 0 322 2 617 268 88 39 chr3 60100373 60100432 -167424146 - L1ME3A LINE L1 -1705 4441 4386 * 1884 260 22 6 chr3 60100430 60100977 -167423601 - L1ME3A LINE L1 -3199 2947 2392 2401 83 0 3 chr3 60100977 60101291 -167423287 - AluSq SINE Alu 0 313 1 195 262 107 58 chr3 60101944 60102047 -167422531 + L3b LINE CR1 1325 1432 -151 555 248 40 76 chr3 60102660 60102858 -167421720 - MIR SINE MIR -49 213 23 212 353 0 0 chr3 60103039 60103107 -167421471 + (TG)n Simple_repeat Simple_repeat 2 69 0 387 228 44 9 chr3 60105104 60105218 -167419360 - MIR3 SINE MIR -83 125 8 663 203 12 3 chr3 60106853 60107192 -167417386 + (TCCA)n Simple_repeat Simple_repeat 1 342 0 1731 154 3 14 chr3 60108252 60108545 -167416033 - AluJb SINE Alu -22 290 1 472 332 147 21 chr3 60108904 60109278 -167415300 + L2 LINE L2 2851 3271 -1 1869 155 3 0 chr3 60109980 60110277 -167414301 - AluJb SINE Alu -14 298 1 198 0 0 0 chr3 60110644 60110666 -167413912 + (T)n Simple_repeat Simple_repeat 1 22 0 266 286 0 0 chr3 60110784 60110847 -167413731 + MIR3 SINE MIR 120 182 -26 260 329 40 40 chr3 60112117 60112250 -167412328 + MIR3 SINE MIR 49 184 -24 1694 162 10 29 chr3 60112250 60112559 -167412019 - AluSx SINE Alu -9 303 1 260 329 40 40 chr3 60112559 60112577 -167412001 + MIR3 SINE MIR 183 200 -8 2382 81 7 0 chr3 60112907 60113216 -167411362 - AluSx SINE Alu -1 311 1 450 255 53 43 chr3 60113361 60113569 -167411009 - AluSq SINE Alu -6 307 98 390 100 33 0 chr3 60113898 60113958 -167410620 - MLT1D LTR MaLR -1 504 443 753 161 0 0 chr3 60113969 60114093 -167410485 + FLAM_C SINE Alu 13 136 -7 869 150 20 0 chr3 60114093 60114246 -167410332 - FRAM SINE Alu -25 151 1 580 157 0 0 chr3 60114279 60114368 -167410210 + AluJb SINE Alu 168 256 -56 376 282 24 40 chr3 60114380 60114504 -167410074 + L1M4 LINE L1 3151 3272 -2874 2135 113 7 3 chr3 60114552 60114862 -167409716 + AluSq SINE Alu 1 311 -2 803 134 8 22 chr3 60115720 60115854 -167408724 + AluJb SINE Alu 1 132 -180 320 289 0 33 chr3 60115858 60115948 -167408630 - L1MC4 LINE L1 -1339 6703 6617 296 194 51 10 chr3 60115968 60116066 -167408512 + (TA)n Simple_repeat Simple_repeat 2 103 0 662 180 18 0 chr3 60116086 60116197 -167408381 + AluJb SINE Alu 185 297 -15 2255 196 54 9 chr3 60116214 60116750 -167407828 + L1M4 LINE L1 3253 3812 -2334 473 171 0 0 chr3 60116767 60116849 -167407729 - L1 LINE L1 -2038 4108 4027 1193 181 25 80 chr3 60116850 60117050 -167407528 + L1M4 LINE L1 4753 4931 -1215 2394 74 0 0 chr3 60117050 60117361 -167407217 + AluYa5 SINE Alu 1 311 0 1193 181 25 80 chr3 60117361 60117474 -167407104 + L1M4 LINE L1 4931 5049 -1097 2687 94 6 3 chr3 60117476 60117828 -167406750 + THE1A LTR MaLR 3 355 0 3642 65 13 0 chr3 60117828 60118301 -167406277 + THE1A-int LTR MaLR 1 580 -1109 696 216 30 0 chr3 60118324 60118491 -167406087 + L1M4 LINE L1 5045 5216 -930 1799 98 0 56 chr3 60118491 60118625 -167405953 - AluSx SINE Alu -43 269 158 2296 95 0 0 chr3 60118625 60118929 -167405649 - AluSq SINE Alu -9 304 1 1799 98 0 56 chr3 60118929 60119079 -167405499 - AluSx SINE Alu -154 158 1 1291 195 10 53 chr3 60119097 60119349 -167405229 - AluJo SINE Alu -22 290 52 719 211 0 0 chr3 60119349 60119482 -167405096 - FLAM_A SINE Alu 0 133 1 1291 195 10 53 chr3 60119482 60119532 -167405046 - AluJo SINE Alu -260 52 1 305 319 170 25 chr3 60120113 60120354 -167404224 + L2 LINE L2 2699 2974 -340 514 269 52 36 chr3 60120391 60120584 -167403994 + L2 LINE L2 3118 3313 0 1660 87 4 17 chr3 60121868 60122125 -167402453 - AluSc SINE Alu 0 304 51 1747 130 30 27 chr3 60124002 60124134 -167400444 + AluSx SINE Alu 2 132 -180 2176 101 0 10 chr3 60124134 60124441 -167400137 + AluSx SINE Alu 1 304 -8 1747 130 30 27 chr3 60124441 60124607 -167399971 + AluSx SINE Alu 132 301 -11 1916 125 7 13 chr3 60124748 60125051 -167399527 + AluSx SINE Alu 1 301 -11 1541 209 10 0 chr3 60125105 60125412 -167399166 + AluJo SINE Alu 1 310 -2 374 299 153 13 chr3 60125791 60125948 -167398630 - L1MC4a LINE L1 -1864 5944 5766 41 82 0 0 chr3 60126806 60126903 -167397675 + GC_rich Low_complexity Low_complexity 1 97 0 355 282 13 19 chr3 60126968 60127124 -167397454 + (CCG)n Simple_repeat Simple_repeat 3 157 0 1071 194 84 4 chr3 60128893 60129130 -167395448 - AluJb SINE Alu -56 256 1 1139 84 24 12 chr3 60129467 60129633 -167394945 - L1PA13 LINE L1 -1 6162 5995 1641 126 28 0 chr3 60130925 60131179 -167393399 + AluSq SINE Alu 39 299 -14 2323 73 0 3 chr3 60131478 60131779 -167392799 - AluY SINE Alu -11 300 1 183 147 29 0 chr3 60132070 60132104 -167392474 + MIR SINE MIR 18 52 -210 2153 77 20 0 chr3 60132919 60133216 -167391362 - AluSp SINE Alu -10 303 1 250 338 0 14 chr3 60133340 60133411 -167391167 - L2 LINE L2 -223 3049 2980 898 133 12 73 chr3 60133411 60133576 -167391002 - AluSq SINE Alu -158 155 1 1637 73 202 4 chr3 60133586 60133833 -167390745 - AluSx SINE Alu -6 296 1 213 267 144 11 chr3 60137974 60138064 -167386514 + MIR3 SINE MIR 97 198 -10 231 267 80 0 chr3 60139357 60139432 -167385146 + L1ME LINE L1 5519 5599 -522 256 230 135 0 chr3 60139502 60139576 -167385002 - MER112 DNA MER1_type 0 260 177 2143 117 3 0 chr3 60139616 60139916 -167384662 + AluSq SINE Alu 1 301 -12 331 250 200 0 chr3 60140028 60140128 -167384450 - L2 LINE L2 -28 3285 3166 228 222 56 28 chr3 60140128 60140200 -167384378 - MER112 DNA MER1_type -186 74 1 328 243 165 10 chr3 60140395 60140498 -167384080 - L2 LINE L2 -2 3311 3193 2104 71 4 0 chr3 60140506 60140772 -167383806 - AluSg SINE Alu -16 294 28 522 134 12 0 chr3 60140772 60140854 -167383724 - AluY SINE Alu -227 84 2 1875 109 0 14 chr3 60142018 60142293 -167382285 + AluSg1 SINE Alu 21 291 -18 2224 106 0 0 chr3 60142580 60142883 -167381695 - AluSg SINE Alu -7 303 1 23 0 0 0 chr3 60143050 60143073 -167381505 + AT_rich Low_complexity Low_complexity 1 23 0 717 123 19 0 chr3 60143255 60143361 -167381217 - FLAM_A SINE Alu -15 127 20 1678 171 9 22 chr3 60143476 60143792 -167380786 + AluJb SINE Alu 1 312 0 560 187 8 82 chr3 60143802 60143936 -167380642 + FLAM_A SINE Alu 1 124 -9 2000 123 30 0 chr3 60143993 60144294 -167380284 - AluSx SINE Alu -2 310 1 2220 93 0 3 chr3 60144363 60144664 -167379914 + AluSg SINE Alu 5 304 -6 630 181 17 3 chr3 60145206 60145321 -167379257 + MER2 DNA MER2_type 1 126 -113 255 245 19 0 chr3 60145324 60145377 -167379201 + MER2 DNA MER2_type 282 335 -10 2329 88 0 0 chr3 60145393 60145700 -167378878 + AluSx SINE Alu 1 307 -5 330 309 125 45 chr3 60145925 60146213 -167378365 + L2 LINE L2 2962 3272 0 180 0 0 0 chr3 60148375 60148395 -167376183 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 1800 120 51 0 chr3 60148397 60148672 -167375906 - AluSq SINE Alu -24 289 1 563 155 0 0 chr3 60149468 60149552 -167375026 + AluJ/FLAM SINE Alu 2 85 -227 448 259 71 9 chr3 60149579 60149691 -167374887 + L2 LINE L2 3189 3307 -6 489 143 347 0 chr3 60149694 60149841 -167374737 - MER3 DNA MER1_type 0 209 12 2023 104 20 3 chr3 60150120 60150417 -167374161 + AluSq SINE Alu 1 302 -11 1797 154 24 3 chr3 60150641 60150939 -167373639 + AluJo SINE Alu 1 304 -8 504 259 26 17 chr3 60151181 60151297 -167373281 + L2 LINE L2 3149 3265 -7 2246 71 0 10 chr3 60151298 60151595 -167372983 + AluY SINE Alu 2 295 -16 1814 160 0 3 chr3 60151694 60151987 -167372591 + AluJb SINE Alu 1 292 -20 22 0 0 0 chr3 60152521 60152543 -167372035 + AT_rich Low_complexity Low_complexity 1 22 0 241 310 59 38 chr3 60153123 60153362 -167371216 + L1M4 LINE L1 5051 5294 -852 4437 114 44 81 chr3 60153488 60154303 -167370275 - LTR1 LTR ERV1 0 785 1 726 214 46 12 chr3 60154378 60154551 -167370027 + L1MC4 LINE L1 7364 7542 -500 896 71 8 16 chr3 60154553 60154680 -167369898 + LTR43 LTR ERV1 397 522 -80 299 200 108 69 chr3 60154684 60154728 -167369850 + L1MC4 LINE L1 7535 7576 -466 2390 70 3 0 chr3 60154728 60155030 -167369548 + AluSp SINE Alu 1 303 -10 299 200 108 69 chr3 60155030 60155115 -167369463 + L1MC4 LINE L1 7576 7669 -373 1625 171 28 3 chr3 60155167 60155453 -167369125 + AluJb SINE Alu 1 293 -19 413 40 0 0 chr3 60155494 60155544 -167369034 + LTR54 LTR ERV1 3 52 -458 5655 200 98 59 chr3 60155545 60156603 -167367975 + MER52A LTR ERV1 1 1151 -604 2136 103 0 13 chr3 60156603 60156903 -167367675 - AluSg SINE Alu -14 296 1 5655 200 98 59 chr3 60156903 60157533 -167367045 + MER52A LTR ERV1 1151 1755 0 1646 162 97 81 chr3 60157533 60157987 -167366591 + LTR54 LTR ERV1 50 510 0 2163 271 49 58 chr3 60157987 60158339 -167366239 + L1M4b LINE L1 143 497 -6362 2098 117 3 3 chr3 60158339 60158639 -167365939 + AluSx SINE Alu 1 300 -12 2163 271 49 58 chr3 60158639 60158969 -167365609 + L1M4b LINE L1 497 829 -6030 2497 125 147 75 chr3 60158969 60158997 -167365581 + LTR36 LTR ERV1 1 26 -585 2059 104 0 14 chr3 60158997 60159308 -167365270 - AluSx SINE Alu 0 307 1 2497 125 147 75 chr3 60159308 60159403 -167365175 + LTR36 LTR ERV1 26 113 -498 2300 85 0 7 chr3 60159403 60159710 -167364868 + AluSx SINE Alu 1 305 -7 2497 125 147 75 chr3 60159710 60159976 -167364602 + LTR36 LTR ERV1 113 358 -253 2042 102 3 14 chr3 60159976 60160270 -167364308 - AluSp SINE Alu -22 291 1 2497 125 147 75 chr3 60160270 60160446 -167364132 + LTR36 LTR ERV1 358 611 0 2163 271 49 58 chr3 60160446 60160585 -167363993 + L1M4b LINE L1 829 957 -5902 * 2261 253 38 33 chr3 60160563 60160588 -167363990 + L1M4b LINE L1 1459 1482 -5475 1704 99 4 0 chr3 60160588 60160821 -167363757 + AluSg/x SINE Alu 72 305 -5 2261 253 38 33 chr3 60160821 60161216 -167363362 + L1M4b LINE L1 1482 1874 -5083 1384 148 24 136 chr3 60161216 60161555 -167363023 + AluYb8 SINE Alu 3 303 -5 2261 253 38 33 chr3 60161555 60162107 -167362471 + L1M4b LINE L1 1874 2490 -4467 * 2493 199 66 73 chr3 60162106 60162661 -167361917 + L1M4 LINE L1 5 556 -5828 1732 161 0 26 chr3 60162661 60162966 -167361612 + AluJo SINE Alu 3 299 -13 2493 199 66 73 chr3 60162966 60163079 -167361499 + L1M4 LINE L1 556 668 -5716 1464 219 158 52 chr3 60163079 60163653 -167360925 + LTR27 LTR ERV1 2 636 0 7010 162 79 71 chr3 60163675 60163834 -167360744 + L1M4 LINE L1 759 915 -5467 1502 182 31 7 chr3 60163834 60164120 -167360458 + AluJo SINE Alu 1 293 -19 7010 162 79 71 chr3 60164120 60164135 -167360443 + L1M4 LINE L1 915 928 -5454 1610 180 28 3 chr3 60164135 60164424 -167360154 + AluJo SINE Alu 1 296 -16 7010 162 79 71 chr3 60164424 60164481 -167360097 + L1M4 LINE L1 928 983 -5399 1646 146 66 0 chr3 60164481 60164755 -167359823 - AluSx SINE Alu -20 292 1 7010 162 79 71 chr3 60164755 60165164 -167359414 + L1M4 LINE L1 983 1387 -4995 1651 167 11 0 chr3 60165164 60165446 -167359132 + AluSx SINE Alu 1 285 -27 279 0 0 0 chr3 60165446 60165477 -167359101 + (CA)n Simple_repeat Simple_repeat 2 32 0 7010 162 79 71 chr3 60165477 60165829 -167358749 + L1M4 LINE L1 1387 1735 -4647 1989 141 17 6 chr3 60165829 60166176 -167358402 + L1MA7 LINE L1 5941 6291 0 7010 162 79 71 chr3 60166176 60166443 -167358135 + L1M4 LINE L1 1735 1998 -4384 2298 49 0 14 chr3 60166443 60166754 -167357824 + AluY SINE Alu 1 307 0 7010 162 79 71 chr3 60166754 60167530 -167357048 + L1M4 LINE L1 1998 2766 -3616 2289 84 0 3 chr3 60167530 60167829 -167356749 + AluY SINE Alu 1 298 -13 2114 93 3 0 chr3 60167839 60168128 -167356450 + AluSg1 SINE Alu 1 290 -19 7010 162 79 71 chr3 60168128 60168182 -167356396 + L1M4 LINE L1 2774 2826 -3556 2183 118 3 0 chr3 60168182 60168488 -167356090 - AluSp SINE Alu -6 307 1 7010 162 79 71 chr3 60168488 60168707 -167355871 + L1M4 LINE L1 2826 3042 -3340 1631 151 58 0 chr3 60168707 60168985 -167355593 - AluSq SINE Alu -19 294 1 7010 162 79 71 chr3 60168985 60169163 -167355415 + L1M4 LINE L1 3042 3281 -3101 676 201 0 22 chr3 60169165 60169299 -167355279 + FLAM_C SINE Alu 1 131 -2 1324 194 0 12 chr3 60169306 60169558 -167355020 + AluJb SINE Alu 2 250 -62 5261 53 12 2 chr3 60169558 60170579 -167353999 + MER11A LTR ERVK 2 1266 0 300 143 0 63 chr3 60170579 60170641 -167353937 + AluJb SINE Alu 244 301 -1 2106 104 3 7 chr3 60170641 60170938 -167353640 + AluSx SINE Alu 1 296 -16 1818 241 14 25 chr3 60170948 60171047 -167353531 + L1M4 LINE L1 3478 3577 -2805 2029 133 3 0 chr3 60171047 60171349 -167353229 + AluSc SINE Alu 5 307 -2 1818 241 14 25 chr3 60171349 60171760 -167352818 + L1M4 LINE L1 3577 3982 -2400 722 261 40 9 chr3 60171772 60171998 -167352580 - L1M4 LINE L1 -2409 3737 3505 1175 206 22 14 chr3 60172005 60172282 -167352296 + L1MB4 LINE L1 5902 6180 0 243 292 23 31 chr3 60172379 60172509 -167352069 + L1MEc LINE L1 1736 1864 -4532 * 1641 188 81 8 chr3 60172508 60172865 -167351713 + L1M4 LINE L1 4851 5233 -1149 634 159 0 26 chr3 60172924 60172999 -167351579 - FLAM_C SINE Alu -201 111 38 2607 108 6 3 chr3 60172999 60173359 -167351219 + THE1B LTR MaLR 4 364 0 634 159 0 26 chr3 60173359 60173396 -167351182 - FLAM_C SINE Alu -274 38 2 2206 83 3 7 chr3 60173408 60173709 -167350869 - AluY SINE Alu -11 300 1 27 0 0 0 chr3 60175253 60175280 -167349298 + AT_rich Low_complexity Low_complexity 1 27 0 578 155 0 0 chr3 60175293 60175377 -167349201 + AluY SINE Alu 2 85 -233 2150 83 0 26 chr3 60175379 60175681 -167348897 + AluSg SINE Alu 1 294 -16 1612 90 27 0 chr3 60175683 60175906 -167348672 + AluSg/x SINE Alu 77 305 -5 2359 76 0 0 chr3 60177519 60177822 -167346756 + AluY SINE Alu 1 303 -8 1947 121 0 24 chr3 60178157 60178454 -167346124 - AluSx SINE Alu -18 294 5 284 221 52 13 chr3 60178496 60178573 -167346005 + L1M4 LINE L1 5240 5319 -1063 843 161 35 17 chr3 60178582 60178756 -167345822 + L1MB8 LINE L1 6002 6178 0 2145 92 0 0 chr3 60179016 60179327 -167345251 - AluY SINE Alu 0 311 1 1523 197 28 10 chr3 60179329 60179618 -167344960 - AluJo SINE Alu -8 294 1 1783 158 30 7 chr3 60179651 60179955 -167344623 - AluJb SINE Alu 0 312 2 24 0 0 0 chr3 60180135 60180159 -167344419 + AT_rich Low_complexity Low_complexity 1 24 0 2106 109 3 0 chr3 60180332 60180625 -167343953 + AluSx SINE Alu 1 294 -18 1872 210 50 38 chr3 60180956 60181730 -167342848 + L1ME LINE L1 27 1041 -5220 1900 123 27 7 chr3 60181730 60182030 -167342548 + AluSx SINE Alu 1 306 -6 1872 210 50 38 chr3 60182030 60182165 -167342413 + L1ME LINE L1 1041 1173 -5088 2352 65 0 10 chr3 60182167 60182476 -167342102 + AluY SINE Alu 1 306 -5 2205 97 3 6 chr3 60182981 60183292 -167341286 - AluSg SINE Alu 0 310 1 731 194 0 8 chr3 60183450 60183584 -167340994 - FLAM_A SINE Alu 0 133 1 1613 184 18 0 chr3 60183988 60184299 -167340279 - AluJo SINE Alu 0 316 1 760 277 42 9 chr3 60184807 60185020 -167339558 + MIR SINE MIR 31 250 -12 2323 89 0 0 chr3 60185618 60185920 -167338658 + AluSg SINE Alu 1 302 -8 2264 70 0 13 chr3 60186135 60186433 -167338145 - AluY SINE Alu -17 294 1 2121 106 7 0 chr3 60186513 60186806 -167337772 + AluSx SINE Alu 1 295 -17 1539 209 0 0 chr3 60186952 60187235 -167337343 - AluJb SINE Alu -27 285 3 2242 100 3 3 chr3 60188389 60188699 -167335879 + AluSg SINE Alu 1 310 0 1252 220 17 10 chr3 60188877 60189168 -167335410 + AluJb SINE Alu 1 293 -19 2330 59 0 26 chr3 60189174 60189481 -167335097 - AluY SINE Alu -12 299 1 23 0 0 0 chr3 60189481 60189504 -167335074 + AT_rich Low_complexity Low_complexity 1 23 0 338 367 20 0 chr3 60189854 60190004 -167334574 + MIR SINE MIR 84 236 -26 1575 156 3 21 chr3 60190014 60190297 -167334281 + AluJb SINE Alu 1 278 -34 2191 108 0 0 chr3 60190340 60190645 -167333933 - AluSx SINE Alu -5 307 3 2111 180 51 111 chr3 60190647 60190766 -167333812 + L1MD1 LINE L1 5216 5341 -901 2185 105 0 10 chr3 60190766 60191072 -167333506 + AluSx SINE Alu 1 303 -9 2111 180 51 111 chr3 60191072 60191480 -167333098 + L1MD1 LINE L1 5341 5772 -470 1883 138 24 0 chr3 60191480 60191769 -167332809 + AluSx SINE Alu 1 296 -16 2111 180 51 111 chr3 60191769 60191860 -167332718 + L1MD1 LINE L1 5772 5867 -375 1416 149 51 48 chr3 60191860 60192155 -167332423 + AluJo SINE Alu 1 296 -16 2111 180 51 111 chr3 60192155 60192243 -167332335 + L1MD1 LINE L1 5867 5959 -283 2122 103 0 41 chr3 60192243 60192388 -167332190 + AluSp SINE Alu 1 150 -163 2344 74 0 3 chr3 60192388 60192686 -167331892 + AluY SINE Alu 1 297 -14 2122 103 0 41 chr3 60192686 60192793 -167331785 + AluSp SINE Alu 150 307 -6 401 104 0 0 chr3 60192793 60192860 -167331718 + AluSp/q SINE Alu 241 307 -6 2111 180 51 111 chr3 60192860 60193022 -167331556 + L1MD1 LINE L1 5959 6070 -172 1568 133 13 51 chr3 60193627 60193833 -167330745 + L1MB4 LINE L1 5585 5797 -383 2133 147 0 0 chr3 60193833 60194133 -167330445 + AluSq SINE Alu 2 301 -12 1568 133 13 51 chr3 60194133 60194148 -167330430 + L1MB4 LINE L1 5797 5811 -369 189 0 0 0 chr3 60194148 60194169 -167330409 + (CA)n Simple_repeat Simple_repeat 2 22 0 1568 133 13 51 chr3 60194169 60194261 -167330317 + L1MB4 LINE L1 5811 5887 -293 1686 133 107 11 chr3 60194261 60194531 -167330047 + AluJb SINE Alu 1 296 -16 2036 106 25 3 chr3 60195102 60195386 -167329192 + AluSg SINE Alu 1 290 -20 2517 74 0 3 chr3 60196006 60196318 -167328260 + AluY SINE Alu 1 311 0 1074 211 16 24 chr3 60196350 60196601 -167327977 + L1MB4 LINE L1 5877 6125 -55 5994 188 17 49 chr3 60196613 60198490 -167326088 + L1MB3 LINE L1 3857 5793 -390 2409 107 7 0 chr3 60198490 60198798 -167325780 + AluSx SINE Alu 1 310 -2 5994 188 17 49 chr3 60198798 60199108 -167325470 + L1MB3 LINE L1 5793 5952 -231 2351 118 0 10 chr3 60199108 60199422 -167325156 + AluSx SINE Alu 1 311 -1 5994 188 17 49 chr3 60199422 60199646 -167324932 + L1MB3 LINE L1 5952 6182 -1 4247 155 43 71 chr3 60199641 60200034 -167324544 + L1MB5 LINE L1 4980 5382 -792 * 1605 169 50 13 chr3 60200034 60200335 -167324243 + AluJo SINE Alu 1 312 0 1891 145 20 14 chr3 60200337 60200633 -167323945 + AluJb SINE Alu 3 300 -12 4247 155 43 71 chr3 60200633 60201414 -167323164 + L1MB5 LINE L1 5383 6114 -60 2152 124 0 0 chr3 60201414 60201731 -167322847 - AluSx SINE Alu 0 317 1 4247 155 43 71 chr3 60201731 60201782 -167322796 + L1MB5 LINE L1 6114 6165 -9 1364 191 70 48 chr3 60202283 60202486 -167322092 + L1MD3 LINE L1 7610 7826 -169 2261 96 0 41 chr3 60202486 60202800 -167321778 - AluSx SINE Alu -11 301 1 1364 191 70 48 chr3 60202800 60202967 -167321611 + L1MD3 LINE L1 7826 7988 -7 303 125 21 0 chr3 60203599 60203647 -167320931 - MER66A LTR ERV1 -142 336 288 2022 177 97 66 chr3 60203773 60203851 -167320727 + MER34 LTR ERV1 12 86 -456 2153 83 0 0 chr3 60203851 60204117 -167320461 + AluSg SINE Alu 37 302 -8 2022 177 97 66 chr3 60204117 60204553 -167320025 + MER34 LTR ERV1 86 542 0 401 292 54 86 chr3 60205017 60205217 -167319361 + L1ME2 LINE L1 5599 5804 -317 2433 93 3 6 chr3 60205217 60205528 -167319050 + AluSx SINE Alu 1 310 -2 401 292 54 86 chr3 60205528 60205564 -167319014 + L1ME2 LINE L1 5804 5840 -281 2397 88 0 0 chr3 60205564 60205858 -167318720 + AluY SINE Alu 1 294 -17 401 292 54 86 chr3 60205858 60205977 -167318601 + L1ME2 LINE L1 5840 5941 -180 354 45 0 0 chr3 60205977 60206021 -167318557 + (CA)n Simple_repeat Simple_repeat 1 44 0 401 292 54 86 chr3 60206021 60206091 -167318487 + L1ME2 LINE L1 5941 6012 -109 2312 120 0 0 chr3 60206283 60206591 -167317987 + AluSq SINE Alu 1 308 -5 2851 13 0 0 chr3 60207919 60208221 -167316357 + AluYb8 SINE Alu 1 302 -16 1841 133 8 8 chr3 60208247 60208511 -167316067 + AluSx SINE Alu 32 295 -17 2522 82 0 19 chr3 60208644 60208959 -167315619 + AluSq SINE Alu 1 309 -4 270 221 15 0 chr3 60209067 60209135 -167315443 + LTR54 LTR ERV1 394 462 -48 2202 122 3 10 chr3 60210152 60210463 -167314115 + AluSx SINE Alu 1 309 -3 436 181 164 9 chr3 60210895 60211011 -167313567 - MER94 DNA DNA 0 134 1 672 288 143 26 chr3 60211032 60211418 -167313160 - L2 LINE L2 -535 2779 2349 272 121 494 0 chr3 60212396 60212479 -167312099 - L2 LINE L2 -1 3312 3189 796 190 20 55 chr3 60212623 60212823 -167311755 + MER67B LTR ERV1 1 193 -468 1486 168 82 10 chr3 60212846 60213137 -167311441 - AluJo SINE Alu 0 312 1 1835 132 12 21 chr3 60213137 60213463 -167311115 - L1MB3 LINE L1 -358 5825 5503 232 231 115 0 chr3 60213466 60213544 -167311034 + L1ME2 LINE L1 6048 6134 -30 2423 159 18 14 chr3 60213619 60214058 -167310520 - MER67B LTR ERV1 0 661 221 1645 142 64 8 chr3 60214072 60214339 -167310239 + AluJb SINE Alu 13 294 -18 2029 125 31 0 chr3 60214342 60214701 -167309877 + L1MB3 LINE L1 5812 6181 -2 1100 113 0 0 chr3 60214713 60214864 -167309714 + AluSg/x SINE Alu 154 304 -8 371 329 210 0 chr3 60214868 60215154 -167309424 - L2 LINE L2 -2 3270 2925 284 312 123 62 chr3 60215499 60215839 -167308739 - L2 LINE L2 -703 2611 2251 274 250 31 94 chr3 60215960 60216088 -167308490 + MIR SINE MIR 123 242 -20 301 116 87 0 chr3 60217547 60217616 -167306962 + T-rich Low_complexity Low_complexity 5 79 0 2074 149 7 0 chr3 60217623 60217931 -167306647 - AluSx SINE Alu -2 310 1 1214 169 5 5 chr3 60217931 60218132 -167306446 + AluJb SINE Alu 104 304 -8 2197 96 27 3 chr3 60218148 60218441 -167306137 + AluSq SINE Alu 1 300 -13 247 149 43 0 chr3 60218692 60218739 -167305839 + HSMAR1 DNA Mariner 1 49 -1238 216 295 0 0 chr3 60221191 60221252 -167303326 - L2 LINE L2 -5 3308 3248 664 148 0 49 chr3 60221343 60221465 -167303113 + FLAM_A SINE Alu 11 126 -16 230 157 0 20 chr3 60222361 60222412 -167302166 + CT-rich Low_complexity Low_complexity 2 51 0 1236 56 11 6 chr3 60222414 60222593 -167301985 + (TTC)n Simple_repeat Simple_repeat 1 180 0 354 256 0 0 chr3 60224567 60224645 -167299933 + L3 LINE CR1 1413 1490 -87 590 314 94 23 chr3 60224835 60225134 -167299444 - L2 LINE L2 -9 3263 2944 2205 111 28 0 chr3 60225817 60226106 -167298472 + AluSg SINE Alu 1 297 -13 239 254 30 0 chr3 60226108 60226175 -167298403 + MIR SINE MIR 79 147 -115 276 254 0 15 chr3 60226753 60226820 -167297758 - L2 LINE L2 -6 3266 3201 382 350 112 0 chr3 60226909 60227123 -167297455 + MIR SINE MIR 16 253 -9 180 314 165 0 chr3 60227240 60227361 -167297217 + L2 LINE L2 3173 3313 0 201 269 0 0 chr3 60228014 60228066 -167296512 + L2 LINE L2 3262 3313 0 234 174 0 0 chr3 60228066 60228112 -167296466 + (TGAA)n Simple_repeat Simple_repeat 2 47 0 489 228 102 0 chr3 60229731 60229777 -167294801 + MER45A DNA AcHobo 1 41 -1540 2403 97 0 0 chr3 60229777 60230075 -167294503 - AluSx SINE Alu -14 298 1 489 228 102 0 chr3 60230075 60230180 -167294398 + MER45A DNA AcHobo 41 178 0 201 245 20 0 chr3 60230252 60230301 -167294277 + CT-rich Low_complexity Low_complexity 4 53 0 185 352 185 0 chr3 60230313 60230421 -167294157 - L2 LINE L2 -18 3254 3127 240 35 0 0 chr3 60231478 60231507 -167293071 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 612 247 199 5 chr3 60231607 60231793 -167292785 + MIR SINE MIR 21 242 -20 227 339 17 17 chr3 60233914 60234032 -167290546 + MIR3 SINE MIR 70 187 -21 1039 151 0 18 chr3 60234512 60234678 -167289900 - FRAM SINE Alu -13 163 1 288 212 62 82 chr3 60236203 60236349 -167288229 + MIR3 SINE MIR 3 145 -63 250 208 108 69 chr3 60236506 60236636 -167287942 + MIR3 SINE MIR 3 137 -71 225 186 0 23 chr3 60239705 60239748 -167284830 + CT-rich Low_complexity Low_complexity 3 44 0 400 319 35 35 chr3 60242365 60242534 -167282044 - L3 LINE CR1 -110 1467 1299 363 214 56 0 chr3 60242554 60242643 -167281935 - MER53 DNA DNA 0 189 96 * 428 195 23 0 chr3 60242567 60242654 -167281924 + MER53 DNA DNA 24 112 -77 1119 155 95 101 chr3 60242654 60242971 -167281607 - MLT1B LTR MaLR 0 390 76 440 184 11 0 chr3 60243010 60243097 -167281481 - MER53 DNA DNA -98 91 4 387 0 0 0 chr3 60244481 60244524 -167280054 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2449 72 0 0 chr3 60244526 60244833 -167279745 - AluSx SINE Alu -5 307 1 204 262 107 58 chr3 60245486 60245589 -167278989 + L3b LINE CR1 1325 1432 -151 555 248 40 76 chr3 60246202 60246400 -167278178 - MIR SINE MIR -49 213 23 212 353 0 0 chr3 60246581 60246649 -167277929 + (TG)n Simple_repeat Simple_repeat 2 69 0 403 236 19 9 chr3 60248645 60248751 -167275827 - MIR SINE MIR -83 125 19 663 203 12 3 chr3 60250394 60250733 -167273845 + (TCCA)n Simple_repeat Simple_repeat 1 342 0 180 298 243 33 chr3 60250969 60251274 -167273304 + L2 LINE L2 2595 2963 -351 1820 162 3 13 chr3 60251778 60252086 -167272492 - AluJb SINE Alu -7 305 1 534 332 147 21 chr3 60252445 60252819 -167271759 + L2 LINE L2 2851 3271 -1 1949 155 3 0 chr3 60253521 60253818 -167270760 - AluJb SINE Alu -14 298 1 180 0 0 0 chr3 60254185 60254205 -167270373 + (T)n Simple_repeat Simple_repeat 1 20 0 277 299 0 0 chr3 60254323 60254390 -167270188 + MIR3 SINE MIR 120 186 -22 255 329 40 40 chr3 60255656 60255789 -167268789 + MIR3 SINE MIR 49 184 -24 1787 162 10 29 chr3 60255789 60256098 -167268480 - AluSx SINE Alu -9 303 1 255 329 40 40 chr3 60256098 60256116 -167268462 + MIR3 SINE MIR 183 200 -8 2440 81 7 0 chr3 60256446 60256756 -167267822 - AluSx SINE Alu 0 312 1 1999 141 24 0 chr3 60256901 60257199 -167267379 - AluSx SINE Alu -6 306 2 336 302 42 19 chr3 60257731 60257883 -167266695 - MIR SINE MIR -69 139 41 204 122 0 0 chr3 60261545 60261586 -167262992 + (CAGA)n Simple_repeat Simple_repeat 2 42 0 231 282 191 0 chr3 60262690 60262821 -167261757 - MIR3 SINE MIR -24 184 29 2299 90 0 0 chr3 60263276 60263575 -167261003 + AluY SINE Alu 1 299 -12 523 289 13 6 chr3 60263761 60263917 -167260661 - MIR SINE MIR -82 180 24 417 288 92 80 chr3 60263986 60264312 -167260266 + L2 LINE L2 2934 3263 -9 210 331 103 22 chr3 60264326 60264462 -167260116 + MIR SINE MIR 1 147 -61 1391 146 42 25 chr3 60266534 60266773 -167257805 + AluJb SINE Alu 1 243 -69 221 217 0 0 chr3 60267402 60267448 -167257130 + L3 LINE CR1 1423 1468 -109 184 350 71 50 chr3 60268547 60268687 -167255891 - MIR SINE MIR -12 250 108 211 327 88 0 chr3 60269926 60270039 -167254539 - L3 LINE CR1 -149 1428 1306 235 348 14 0 chr3 60271291 60271360 -167253218 - MIR SINE MIR -18 244 175 596 279 25 17 chr3 60271360 60271549 -167253029 - MIR SINE MIR -37 225 38 222 299 195 0 chr3 60271539 60271626 -167252952 + MIR SINE MIR 124 227 -35 * 236 274 0 32 chr3 60274112 60274174 -167250404 - MIR3 SINE MIR -49 159 100 246 105 0 0 chr3 60275854 60275892 -167248686 + (CA)n Simple_repeat Simple_repeat 1 38 0 2080 125 7 0 chr3 60278509 60278804 -167245774 - AluSx SINE Alu -15 297 1 225 204 61 0 chr3 60279505 60279554 -167245024 - L2 LINE L2 0 3272 3221 441 257 137 33 chr3 60279608 60279791 -167244787 + MIR SINE MIR 1 202 -60 568 212 8 0 chr3 60280920 60281038 -167243540 - MER58B DNA MER1_type -3 338 220 357 177 13 25 chr3 60281852 60281931 -167242647 + MER21B LTR ERV1 8 85 -778 2550 224 84 36 chr3 60281959 60282718 -167241860 + MER21B LTR ERV1 20 815 -48 191 162 176 59 chr3 60283572 60283640 -167240938 - L2 LINE L2 -4 3268 3193 222 400 12 6 chr3 60284003 60284173 -167240405 - L2 LINE L2 -456 2858 2688 1739 165 0 11 chr3 60284175 60284489 -167240089 + AluJo SINE Alu 1 311 0 42 89 0 0 chr3 60285426 60285538 -167239040 + AT_rich Low_complexity Low_complexity 1 112 0 279 277 21 21 chr3 60285538 60285576 -167239002 + L1MC4 LINE L1 7902 7939 -103 2110 175 15 25 chr3 60285576 60285970 -167238608 + MLT1B LTR MaLR 1 390 0 279 277 21 21 chr3 60285970 60286072 -167238506 + L1MC4 LINE L1 7938 8042 0 1350 164 91 18 chr3 60286130 60286416 -167238162 + AluJo SINE Alu 1 307 -5 377 299 88 61 chr3 60286420 60286653 -167237925 + L1MC4a LINE L1 5574 5819 -1989 2144 87 0 14 chr3 60286653 60286981 -167237597 + AluSx SINE Alu 1 324 0 377 299 88 61 chr3 60286981 60287040 -167237538 + L1MC4a LINE L1 5819 5875 -1933 1195 181 87 116 chr3 60287162 60287472 -167237106 + AluJo SINE Alu 2 302 0 352 299 235 17 chr3 60287923 60288221 -167236357 - L2 LINE L2 0 3313 2951 444 271 82 82 chr3 60288347 60288591 -167235987 - L2 LINE L2 -616 2698 2455 292 244 39 13 chr3 60289229 60289307 -167235271 + MIR SINE MIR 13 92 -170 395 238 12 0 chr3 60290161 60290245 -167234333 - L2 LINE L2 -39 3274 3190 1011 261 48 48 chr3 60290505 60290922 -167233656 + MLT1C LTR MaLR 49 465 -2 2501 87 32 9 chr3 60290964 60291311 -167233267 - THE1A LTR MaLR 0 355 1 11901 83 19 11 chr3 60291311 60292716 -167231862 - THE1A-int LTR MaLR 0 1580 160 2308 102 0 0 chr3 60292716 60293021 -167231557 - AluSg SINE Alu -5 305 1 11901 83 19 11 chr3 60293021 60293183 -167231395 - THE1A-int LTR MaLR -1420 160 1 1896 115 18 15 chr3 60293187 60293517 -167231061 - THE1A LTR MaLR -24 331 1 401 348 87 4 chr3 60293825 60294078 -167230500 - L1MC/D LINE L1 -2101 5707 5434 277 231 173 19 chr3 60295532 60295688 -167228890 - MIR3 SINE MIR -21 187 8 238 197 76 15 chr3 60295991 60296057 -167228521 + MLT1L LTR MaLR 12 81 -534 * 412 117 15 13 chr3 60296045 60296129 -167228449 + MLT1J LTR MaLR 48 160 -318 284 292 62 21 chr3 60296209 60296305 -167228273 + MIR SINE MIR 38 137 -71 198 316 128 43 chr3 60296363 60296400 -167228178 - MIR SINE MIR -9 253 221 1917 134 10 0 chr3 60296400 60296699 -167227879 - AluSq SINE Alu -11 302 1 198 316 128 43 chr3 60296699 60296778 -167227800 - MIR SINE MIR -41 221 127 435 340 60 66 chr3 60297170 60297502 -167227076 + L2 LINE L2 2918 3247 -25 349 326 90 6 chr3 60297576 60297766 -167226812 + MIR SINE MIR 34 240 -22 1143 89 119 0 chr3 60297869 60298037 -167226541 - AluSx SINE Alu -124 188 1 201 74 0 0 chr3 60299399 60299426 -167225152 + (CTCA)n Simple_repeat Simple_repeat 1 27 0 294 245 51 20 chr3 60299426 60299524 -167225054 + L2 LINE L2 2646 2746 -568 284 194 45 0 chr3 60299532 60299599 -167224979 + L1ME2 LINE L1 6086 6155 -9 729 269 122 36 chr3 60299748 60300109 -167224469 + L2 LINE L2 2922 3313 0 2345 86 0 0 chr3 60300403 60300704 -167223874 - AluSx SINE Alu -10 302 2 253 243 260 24 chr3 60301078 60301247 -167223331 + L1MB8 LINE L1 5353 5561 -2247 407 258 48 91 chr3 60302124 60302682 -167221896 + L1MB8 LINE L1 5584 6178 0 1835 123 65 0 chr3 60302685 60302977 -167221601 + AluSx SINE Alu 1 311 -1 504 285 25 11 chr3 60304222 60304400 -167220178 - MIR SINE MIR -48 214 34 2459 128 24 68 chr3 60304566 60305020 -167219558 + Tigger2a DNA MER2_type 1 434 0 244 365 0 10 chr3 60305595 60305699 -167218879 + MIR3 SINE MIR 15 117 -91 193 224 143 88 chr3 60305831 60305920 -167218658 - MIR SINE MIR -6 256 154 2345 74 3 0 chr3 60305920 60306219 -167218359 + AluY SINE Alu 1 300 -11 193 224 143 88 chr3 60306219 60306276 -167218302 - MIR SINE MIR -108 154 102 2027 86 6 57 chr3 60309013 60309328 -167215250 + AluSq SINE Alu 1 299 -14 2161 86 7 3 chr3 60309528 60309830 -167214748 + AluY SINE Alu 1 303 -8 1486 215 162 46 chr3 60310056 60310551 -167214027 - MLT1F LTR MaLR 0 567 1 1317 268 60 20 chr3 60311276 60311876 -167212702 - L1MEc LINE L1 -4747 1649 1026 321 268 56 7 chr3 60312166 60312182 -167212396 - L1MA10 LINE L1 0 6334 6319 3763 195 40 18 chr3 60312182 60312308 -167212270 - L1ME1 LINE L1 -10 6156 6034 2241 87 0 0 chr3 60312308 60312607 -167211971 - AluSx SINE Alu -13 299 1 3763 195 40 18 chr3 60312607 60313425 -167211153 - L1ME1 LINE L1 -132 6034 5200 934 282 52 19 chr3 60313691 60314056 -167210522 - L1MEc LINE L1 -5977 419 43 747 335 25 4 chr3 60314369 60314614 -167209964 + MIR SINE MIR 2 251 -11 2243 228 49 16 chr3 60314734 60315304 -167209274 + L1MC4 LINE L1 7260 7848 -194 22 56 0 0 chr3 60319139 60319175 -167205403 + GC_rich Low_complexity Low_complexity 1 36 0 23 68 0 0 chr3 60319588 60319632 -167204946 + GC_rich Low_complexity Low_complexity 1 44 0 343 253 72 0 chr3 60319806 60319889 -167204689 - MER5A DNA MER1_type -35 154 66 323 311 82 30 chr3 60321003 60321138 -167203440 + L2 LINE L2 3126 3267 -5 23 0 0 0 chr3 60321138 60321161 -167203417 + AT_rich Low_complexity Low_complexity 1 23 0 198 331 101 7 chr3 60321216 60321364 -167203214 + L3b LINE CR1 1213 1374 -209 207 100 0 0 chr3 60322242 60322272 -167202306 + (A)n Simple_repeat Simple_repeat 1 30 0 1749 266 26 6 chr3 60323586 60323851 -167200727 - L1M4 LINE L1 -3491 2655 2397 2191 94 3 3 chr3 60323851 60324148 -167200430 - AluSp SINE Alu 0 313 17 1749 266 26 6 chr3 60324148 60324411 -167200167 - L1M4 LINE L1 -3749 2397 2116 295 177 0 48 chr3 60324411 60324473 -167200105 + Alu SINE Alu 242 300 0 595 200 64 22 chr3 60324570 60324756 -167199822 + L1MCa LINE L1 1544 1850 -4576 1809 98 0 0 chr3 60324761 60325006 -167199572 - AluSq SINE Alu -12 301 57 1896 136 0 4 chr3 60325006 60325285 -167199293 - MER9 LTR ERVK -233 278 1 1642 51 0 0 chr3 60325426 60325623 -167198955 + AluY SINE Alu 2 198 -113 381 189 144 0 chr3 60325745 60325835 -167198743 + MLT1A2 LTR MaLR 1 103 -287 1980 197 8 6 chr3 60325835 60326191 -167198387 - MLT1A1 LTR MaLR 0 365 9 1020 220 60 35 chr3 60326167 60326449 -167198129 + MLT1A2 LTR MaLR 86 374 0 * 1262 174 59 0 chr3 60326536 60326755 -167197823 + AluJb SINE Alu 5 236 -76 2328 69 13 0 chr3 60327197 60327503 -167197075 + AluY SINE Alu 1 310 -1 185 0 0 39 chr3 60327894 60327920 -167196658 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 389 240 140 86 chr3 60328112 60328311 -167196267 + L2 LINE L2 2315 2502 -812 14018 130 9 26 chr3 60328311 60328500 -167196078 + L1PA10 LINE L1 3030 3221 -2947 2021 95 0 0 chr3 60328500 60328789 -167195789 + AluSx SINE Alu 22 310 0 14018 130 9 26 chr3 60328789 60329528 -167195050 + L1PA10 LINE L1 3221 3971 -2197 2148 103 0 0 chr3 60329528 60329820 -167194758 + AluSc SINE Alu 1 292 -17 2095 119 0 6 chr3 60329827 60330139 -167194439 + AluSg SINE Alu 1 310 0 14018 130 9 26 chr3 60330139 60331657 -167192921 + L1PA10 LINE L1 3977 5464 -704 2229 92 0 0 chr3 60331657 60331951 -167192627 + AluSx SINE Alu 1 294 -18 14018 130 9 26 chr3 60331951 60332642 -167191936 + L1PA10 LINE L1 5464 6165 -3 389 240 140 86 chr3 60332642 60332721 -167191857 + L2 LINE L2 2502 2608 -706 399 322 84 24 chr3 60332733 60332991 -167191587 + L2 LINE L2 2770 3045 -268 237 275 231 0 chr3 60333167 60333193 -167191385 + L2 LINE L2 3196 3215 -98 248 0 31 0 chr3 60333193 60333225 -167191353 + (TTG)n Simple_repeat Simple_repeat 2 34 0 237 275 231 0 chr3 60333225 60333289 -167191289 + L2 LINE L2 3215 3307 -6 289 284 140 38 chr3 60333290 60333526 -167191052 + L1ME3 LINE L1 5645 5897 -265 3732 156 69 17 chr3 60333731 60333965 -167190613 + L1MB3 LINE L1 5382 5602 -581 309 26 0 0 chr3 60333965 60334003 -167190575 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 3732 156 69 17 chr3 60334003 60334207 -167190371 + L1MB3 LINE L1 5602 5794 -389 1481 171 42 28 chr3 60334207 60334494 -167190084 + AluJb SINE Alu 1 291 -11 3732 156 69 17 chr3 60334494 60334777 -167189801 + L1MB3 LINE L1 5794 6142 -41 811 171 7 14 chr3 60334777 60334915 -167189663 + FAM SINE Alu 20 158 -163 321 123 0 0 chr3 60334915 60334972 -167189606 + L1MB4 LINE L1 6124 6180 0 22 0 0 0 chr3 60335219 60335241 -167189337 + AT_rich Low_complexity Low_complexity 1 22 0 1693 267 122 80 chr3 60335301 60335876 -167188702 + L1MC4a LINE L1 5298 5848 -1960 2063 109 3 13 chr3 60335876 60336180 -167188398 + AluSx SINE Alu 1 301 -11 1693 267 122 80 chr3 60336180 60336334 -167188244 + L1MC4a LINE L1 5848 5994 -1814 1930 117 7 3 chr3 60336334 60336638 -167187940 - AluSx SINE Alu 0 305 1 1693 267 122 80 chr3 60336638 60336793 -167187785 + L1MC4a LINE L1 5994 6141 -1667 1761 151 3 13 chr3 60336793 60337097 -167187481 - AluJo SINE Alu -11 301 1 1693 267 122 80 chr3 60337097 60337365 -167187213 + L1MC4a LINE L1 6141 6396 -1412 614 213 74 0 chr3 60337365 60337487 -167187091 - FLAM_A SINE Alu -2 131 1 1693 267 122 80 chr3 60337487 60337573 -167187005 + L1MC4a LINE L1 6396 6477 -1331 1670 167 7 20 chr3 60337573 60337873 -167186705 + AluJo SINE Alu 1 296 -16 1693 267 122 80 chr3 60337873 60338283 -167186295 + L1MC4a LINE L1 6477 7020 -788 446 295 35 26 chr3 60338294 60338521 -167186057 + L1MD2 LINE L1 15 243 -6299 * 3078 161 77 97 chr3 60338516 60339071 -167185507 + L1MD2 LINE L1 1411 1976 -4668 2539 43 0 0 chr3 60339071 60339375 -167185203 + AluY SINE Alu 1 304 -7 3078 161 77 97 chr3 60339375 60339388 -167185190 + L1MD2 LINE L1 1976 1988 -4656 2359 34 0 20 chr3 60339388 60339685 -167184893 + AluY SINE Alu 6 296 -15 3078 161 77 97 chr3 60339685 60339696 -167184882 + L1MD2 LINE L1 1988 1998 -4646 2424 60 0 0 chr3 60339696 60339995 -167184583 + AluY SINE Alu 6 304 -7 3078 161 77 97 chr3 60339995 60340750 -167183828 + L1MD2 LINE L1 1998 2857 -3787 964 159 115 0 chr3 60340717 60340925 -167183653 + L1MB7 LINE L1 6435 6666 -16 * 3512 195 100 8 chr3 60340984 60341743 -167182835 + L1MD2 LINE L1 5802 6630 -227 308 241 102 36 chr3 60341752 60341889 -167182689 + L1MD2 LINE L1 6693 6838 -19 2211 71 30 10 chr3 60341948 60342244 -167182334 - AluY SINE Alu -9 302 1 286 299 92 38 chr3 60342261 60342445 -167182133 - L2 LINE L2 -2 3311 3118 1774 164 7 3 chr3 60343171 60343476 -167181102 + AluJb SINE Alu 1 306 -6 1171 219 58 29 chr3 60343476 60343823 -167180755 - L1MB8 LINE L1 -10 6168 5812 1884 133 13 36 chr3 60344204 60344505 -167180073 + AluJb SINE Alu 1 294 -18 311 274 48 0 chr3 60344509 60344606 -167179972 + MIR SINE MIR 35 140 -116 364 271 40 40 chr3 60344885 60345084 -167179494 - L2 LINE L2 0 3313 3115 212 273 0 18 chr3 60345298 60345353 -167179225 - MIR SINE MIR 0 262 209 1240 158 36 119 chr3 60345977 60346096 -167178482 + AluYb8 SINE Alu 1 128 -190 432 0 0 0 chr3 60346096 60346144 -167178434 + (CA)n Simple_repeat Simple_repeat 2 49 0 1240 158 36 119 chr3 60346144 60346193 -167178385 + AluYb8 SINE Alu 128 180 -138 306 0 0 0 chr3 60346193 60346227 -167178351 + (CA)n Simple_repeat Simple_repeat 2 35 0 1240 158 36 119 chr3 60346227 60346392 -167178186 + AluYb8 SINE Alu 180 307 -11 848 206 0 12 chr3 60346422 60346587 -167177991 + FRAM SINE Alu 1 163 -3 23 33 0 0 chr3 60346587 60346617 -167177961 + AT_rich Low_complexity Low_complexity 1 30 0 1561 122 50 4 chr3 60346994 60347232 -167177346 - AluSx SINE Alu -24 288 40 189 0 0 0 chr3 60347504 60347525 -167177053 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1283 157 12 70 chr3 60348060 60348302 -167176276 + AluSx SINE Alu 1 228 -84 903 144 0 0 chr3 60348528 60348653 -167175925 + FLAM_C SINE Alu 1 125 -18 321 306 94 29 chr3 60348665 60349145 -167175433 + L1MC/D LINE L1 4758 5268 -878 353 300 197 21 chr3 60349228 60349461 -167175117 + L1MC/D LINE L1 5364 5637 -2171 2154 105 20 7 chr3 60349637 60349943 -167174635 + AluSg SINE Alu 1 310 0 851 267 158 30 chr3 60350363 60350794 -167173784 - L2 LINE L2 0 3313 2828 3016 175 45 5 chr3 60350915 60351531 -167173047 + L1MB7 LINE L1 5533 6173 -11 579 305 155 35 chr3 60351684 60352025 -167172553 - MLT1J1 LTR MaLR 0 446 65 1388 279 160 6 chr3 60352166 60352300 -167172278 - L2 LINE L2 -4 3309 3197 15619 130 40 35 chr3 60352300 60353292 -167171286 + Tigger2 DNA MER2_type 1 988 -1730 2407 84 3 0 chr3 60353292 60353589 -167170989 + AluSp SINE Alu 3 300 -13 15619 130 40 35 chr3 60353589 60353782 -167170796 + Tigger2 DNA MER2_type 988 1179 -1539 1653 185 0 46 chr3 60353782 60354085 -167170493 - AluJb SINE Alu -23 289 1 15619 130 40 35 chr3 60354085 60354853 -167169725 + Tigger2 DNA MER2_type 1179 1942 -776 2420 85 0 3 chr3 60354853 60355160 -167169418 + AluSx SINE Alu 1 306 -6 15619 130 40 35 chr3 60355160 60355910 -167168668 + Tigger2 DNA MER2_type 1942 2717 -1 1388 279 160 6 chr3 60355910 60356592 -167167986 - L2 LINE L2 -116 3197 2365 24 0 0 0 chr3 60357089 60357113 -167167465 + AT_rich Low_complexity Low_complexity 1 24 0 387 0 0 0 chr3 60357133 60357176 -167167402 + (TG)n Simple_repeat Simple_repeat 2 44 0 24 32 0 0 chr3 60357899 60357930 -167166648 + AT_rich Low_complexity Low_complexity 1 31 0 212 241 216 26 chr3 60357948 60358003 -167166575 - MIR SINE MIR -105 157 114 5818 111 67 136 chr3 60358003 60358267 -167166311 - Tigger3b DNA MER2_type -1797 1231 951 2422 103 0 0 chr3 60358267 60358578 -167166000 + AluSx SINE Alu 1 311 -1 5818 111 67 136 chr3 60358578 60358891 -167165687 - Tigger3b DNA MER2_type -2077 951 618 2085 114 7 33 chr3 60358891 60359197 -167165381 + AluSx SINE Alu 1 298 -14 5818 111 67 136 chr3 60359197 60359939 -167164639 - Tigger3b DNA MER2_type -2410 618 1 212 241 216 26 chr3 60359939 60359999 -167164579 - MIR SINE MIR -148 114 20 775 102 110 16 chr3 60361732 60361859 -167162719 + AluY SINE Alu 173 311 0 2124 127 17 0 chr3 60361925 60362224 -167162354 + AluSc SINE Alu 1 304 -5 278 179 0 15 chr3 60363068 60363135 -167161443 + GA-rich Low_complexity Low_complexity 3 68 0 1155 168 117 98 chr3 60363698 60363746 -167160832 + MLT1A1 LTR MaLR 1 47 -318 2292 102 3 0 chr3 60363746 60364050 -167160528 - AluSq SINE Alu -8 305 1 1155 168 117 98 chr3 60364050 60364359 -167160219 + MLT1A1 LTR MaLR 47 365 0 232 265 126 84 chr3 60364364 60364602 -167159976 - L3 LINE CR1 -87 1490 1243 891 127 38 6 chr3 60364705 60364862 -167159716 + L1MA2 LINE L1 6143 6304 0 32 0 0 0 chr3 60364862 60364894 -167159684 + AT_rich Low_complexity Low_complexity 1 32 0 1045 196 88 74 chr3 60366624 60366910 -167157668 + L1MC5 LINE L1 7071 7367 -594 2212 122 0 0 chr3 60366910 60367206 -167157372 - AluSx SINE Alu -16 296 1 1045 196 88 74 chr3 60367206 60367364 -167157214 + L1MC5 LINE L1 7367 7521 -440 295 70 0 53 chr3 60367410 60367467 -167157111 + (GAAA)n Simple_repeat Simple_repeat 3 56 0 294 293 10 0 chr3 60367476 60367575 -167157003 + L1ME LINE L1 4442 4541 -1605 * 1017 170 77 71 chr3 60367572 60367797 -167156781 + L1ME LINE L1 4863 5092 -1054 1734 162 3 39 chr3 60367797 60368106 -167156472 - AluJb SINE Alu -14 298 1 1017 170 77 71 chr3 60368106 60368191 -167156387 + L1ME LINE L1 5092 5175 -971 2063 121 3 0 chr3 60368210 60368507 -167156071 + AluSx SINE Alu 15 312 0 705 144 170 0 chr3 60368507 60368660 -167155918 + L1ME LINE L1 5594 5772 -394 2497 186 100 39 chr3 60368789 60368979 -167155599 + L1ME1 LINE L1 5400 5577 -589 2506 74 0 0 chr3 60368979 60369290 -167155288 + AluYa5 SINE Alu 1 311 0 2497 186 100 39 chr3 60369290 60369475 -167155103 + L1ME1 LINE L1 5577 5749 -417 2162 78 4 0 chr3 60369475 60369743 -167154835 + AluY SINE Alu 29 297 -14 2497 186 100 39 chr3 60369743 60370033 -167154545 + L1ME1 LINE L1 5749 6107 -59 460 170 64 0 chr3 60370146 60370240 -167154338 - L1MB4 LINE L1 -1 6179 6080 2036 62 89 0 chr3 60370325 60370606 -167153972 + AluY SINE Alu 1 304 0 2355 83 0 13 chr3 60372051 60372353 -167152225 - AluY SINE Alu -13 298 1 282 264 35 0 chr3 60372644 60372731 -167151847 + L1MC4 LINE L1 7803 7892 -150 260 158 18 0 chr3 60372739 60372796 -167151782 + (TA)n Simple_repeat Simple_repeat 1 58 0 226 286 138 13 chr3 60372910 60373141 -167151437 + L1MC/D LINE L1 5566 5825 -1983 * 317 278 18 71 chr3 60373113 60373282 -167151296 + L1MC5 LINE L1 7772 7931 -30 970 178 37 61 chr3 60373420 60373634 -167150944 + AluJo SINE Alu 86 294 -18 1412 165 7 76 chr3 60373826 60374129 -167150449 + AluJb SINE Alu 1 282 -30 378 0 0 0 chr3 60374132 60374174 -167150404 + (CA)n Simple_repeat Simple_repeat 1 42 0 2579 56 3 0 chr3 60374323 60374626 -167149952 + AluY SINE Alu 5 308 -3 1544 156 70 0 chr3 60375102 60375346 -167149232 + AluSx SINE Alu 45 305 -7 518 189 119 75 chr3 60375492 60375719 -167148859 + L1MC5 LINE L1 7619 7855 -106 198 103 0 0 chr3 60375960 60375989 -167148589 + (A)n Simple_repeat Simple_repeat 1 29 0 438 165 0 0 chr3 60376387 60376466 -167148112 + CT-rich Low_complexity Low_complexity 2 80 0 2221 101 0 3 chr3 60376484 60376771 -167147807 - AluSc SINE Alu -23 286 1 1720 163 20 33 chr3 60377510 60377811 -167146767 - AluJo SINE Alu -15 297 1 209 361 37 0 chr3 60377831 60377939 -167146639 - L2 LINE L2 -292 2980 2869 2365 88 0 0 chr3 60378548 60378842 -167145736 + AluSg SINE Alu 1 294 -16 825 161 15 0 chr3 60378842 60378972 -167145606 - MER2 DNA MER2_type -213 132 1 273 235 7 131 chr3 60379142 60379295 -167145283 + L2 LINE L2 3137 3270 -2 1267 195 139 73 chr3 60379698 60380525 -167144053 + L1MC4 LINE L1 6873 7902 -140 1569 45 10 25 chr3 60380833 60381031 -167143547 - AluY SINE Alu -14 297 103 2177 102 10 0 chr3 60381471 60381765 -167142813 + AluSx SINE Alu 1 297 -15 1703 133 44 34 chr3 60382042 60382336 -167142242 - AluJo SINE Alu -15 297 1 1640 137 44 26 chr3 60383097 60383368 -167141210 + AluJo SINE Alu 21 296 -16 2409 84 0 0 chr3 60383370 60383668 -167140910 + AluSg SINE Alu 1 298 -12 230 325 53 26 chr3 60384548 60384699 -167139879 + MER5A DNA MER1_type 32 186 -3 197 188 82 71 chr3 60385714 60385799 -167138779 - L2 LINE L2 -5 3267 3182 268 296 23 0 chr3 60387460 60387548 -167137030 - L2 LINE L2 -23 3249 3160 215 196 39 20 chr3 60387555 60387606 -167136972 - MIR SINE MIR -121 141 90 604 161 0 65 chr3 60388136 60388260 -167136318 + AluJb SINE Alu 27 142 -170 1549 186 26 0 chr3 60388263 60388532 -167136046 + AluJo SINE Alu 11 286 -26 263 266 51 0 chr3 60388538 60388617 -167135961 - MER5A DNA MER1_type -39 150 68 747 162 0 0 chr3 60388634 60388751 -167135827 + FLAM_C SINE Alu 19 135 -8 282 73 0 0 chr3 60388861 60388902 -167135676 + (CA)n Simple_repeat Simple_repeat 2 42 0 2360 80 10 0 chr3 60389490 60389778 -167134800 + AluSc SINE Alu 1 291 -18 2063 127 7 26 chr3 60389935 60390243 -167134335 + AluJo SINE Alu 1 302 -10 561 273 27 7 chr3 60390645 60390795 -167133783 + L2 LINE L2 3160 3312 -1 186 93 74 0 chr3 60390948 60391002 -167133576 + A-rich Low_complexity Low_complexity 1 58 0 351 0 0 0 chr3 60391531 60391570 -167133008 + (A)n Simple_repeat Simple_repeat 1 39 0 2497 90 0 0 chr3 60391754 60392065 -167132513 - AluY SINE Alu 0 311 1 2307 92 0 3 chr3 60392069 60392362 -167132216 - AluSc SINE Alu -17 292 1 2257 102 0 3 chr3 60393427 60393721 -167130857 - AluSq SINE Alu -20 293 1 2385 79 0 3 chr3 60394206 60394497 -167130081 + AluSx SINE Alu 1 290 -22 2470 68 20 0 chr3 60394600 60394893 -167129685 + AluSx SINE Alu 6 304 -8 189 0 0 0 chr3 60396441 60396462 -167128116 + (TA)n Simple_repeat Simple_repeat 1 21 0 1826 121 30 0 chr3 60396857 60397122 -167127456 - AluY SINE Alu 0 311 39 1048 59 35 12 chr3 60398177 60398346 -167126232 + (TTTC)n Simple_repeat Simple_repeat 4 176 0 344 191 29 9 chr3 60398348 60398359 -167126219 + CT-rich Low_complexity Low_complexity 1 10 -97 2457 75 7 0 chr3 60398359 60398652 -167125926 - AluY SINE Alu -16 295 1 344 191 29 9 chr3 60398652 60398745 -167125833 + CT-rich Low_complexity Low_complexity 10 107 0 2052 140 13 7 chr3 60398745 60399052 -167125526 - AluSx SINE Alu -3 309 1 208 281 188 0 chr3 60399244 60399372 -167125206 + MIR3 SINE MIR 30 181 -27 183 310 28 14 chr3 60399517 60399588 -167124990 + MIR SINE MIR 179 250 -12 1967 218 36 42 chr3 60399818 60400111 -167124467 + L1ME2 LINE L1 5581 5871 -293 1786 125 3 70 chr3 60400111 60400438 -167124140 + AluJb SINE Alu 1 305 -7 1967 218 36 42 chr3 60400438 60400722 -167123856 + L1ME2 LINE L1 5871 6155 -9 368 273 38 30 chr3 60401489 60401621 -167122957 - MIR SINE MIR -25 237 105 239 184 41 41 chr3 60401777 60401802 -167122776 + L1ME2 LINE L1 5246 5270 -876 2065 159 5 50 chr3 60401802 60401999 -167122579 + MER47A DNA MER2_type 1 174 -2149 2255 125 0 0 chr3 60401999 60402303 -167122275 - AluSq SINE Alu -7 306 3 2065 159 5 50 chr3 60402303 60402488 -167122090 + MER47A DNA MER2_type 174 366 0 239 184 41 41 chr3 60402488 60402560 -167122018 + L1ME2 LINE L1 5269 5343 -803 1006 244 10 0 chr3 60403201 60403410 -167121168 + AluJo SINE Alu 3 213 -99 230 167 0 0 chr3 60403411 60403447 -167121131 - Alu SINE Alu -265 36 1 225 0 0 0 chr3 60403459 60403484 -167121094 + (T)n Simple_repeat Simple_repeat 1 25 0 945 71 0 0 chr3 60403584 60403696 -167120882 - AluSq/x SINE Alu -200 112 1 525 306 50 18 chr3 60404582 60404804 -167119774 - MER112 DNA MER1_type 0 260 32 263 289 94 50 chr3 60404819 60404978 -167119600 - MER5A DNA MER1_type 0 189 24 2544 77 0 0 chr3 60405173 60405484 -167119094 + AluY SINE Alu 1 311 0 1876 159 3 7 chr3 60406359 60406660 -167117918 + AluJb SINE Alu 1 300 -12 1896 217 46 49 chr3 60407035 60407602 -167116976 + L1ME2 LINE L1 5590 6154 -10 1436 169 48 121 chr3 60408233 60408409 -167116169 + MLT1C LTR MaLR 1 188 -279 2192 114 7 7 chr3 60408409 60408708 -167115870 + AluSx SINE Alu 1 299 -13 1436 169 48 121 chr3 60408708 60409035 -167115543 + MLT1C LTR MaLR 188 467 0 200 111 0 28 chr3 60409180 60409216 -167115362 + (GAAAA)n Simple_repeat Simple_repeat 2 36 0 794 141 0 70 chr3 60411041 60411183 -167113395 - FLAM_C SINE Alu -1 132 1 2088 129 0 0 chr3 60411786 60412066 -167112512 + AluSx SINE Alu 1 280 -32 22 0 0 0 chr3 60412516 60412538 -167112040 + AT_rich Low_complexity Low_complexity 1 22 0 840 119 52 108 chr3 60412539 60412600 -167111978 - L1MD1 LINE L1 -7 6235 6172 1946 173 3 3 chr3 60412600 60412912 -167111666 + AluJb SINE Alu 1 312 0 840 119 52 108 chr3 60412912 60413044 -167111534 - L1MD1 LINE L1 -70 6172 6053 26 30 0 0 chr3 60413739 60413772 -167110806 + AT_rich Low_complexity Low_complexity 1 33 0 2466 71 0 7 chr3 60413786 60414082 -167110496 - AluY SINE Alu -17 294 1 251 277 69 39 chr3 60415908 60416038 -167108540 + MIR SINE MIR 44 177 -85 530 203 191 21 chr3 60420051 60420287 -167104291 + HAL1 LINE L1 2004 2279 -228 1903 139 24 17 chr3 60420305 60420600 -167103978 + AluJo SINE Alu 1 297 -15 227 239 0 75 chr3 60420721 60420788 -167103790 + HAL1 LINE L1 2446 2507 0 244 227 62 62 chr3 60420832 60420929 -167103649 - MIR SINE MIR -138 124 28 184 264 19 19 chr3 60421229 60421282 -167103296 + MER5B DNA MER1_type 76 128 -50 1767 160 35 11 chr3 60422100 60422382 -167102196 + AluJo SINE Alu 1 289 -23 227 259 165 58 chr3 60422527 60422672 -167101906 - MIR3 SINE MIR -41 167 28 1894 124 62 0 chr3 60423085 60423360 -167101218 + AluSx SINE Alu 1 292 -20 551 219 77 26 chr3 60424298 60424453 -167100125 - MIR SINE MIR -35 227 65 310 289 26 35 chr3 60425202 60425316 -167099262 - MIR SINE MIR -71 137 25 1612 148 4 0 chr3 60425573 60425810 -167098768 - AluJb SINE Alu -8 304 67 2075 134 14 0 chr3 60425828 60426119 -167098459 + AluSx SINE Alu 1 295 -17 264 59 0 0 chr3 60426122 60426156 -167098422 + (TAA)n Simple_repeat Simple_repeat 2 35 0 402 275 96 30 chr3 60426218 60426385 -167098193 + MIR SINE MIR 77 254 -8 2264 119 0 16 chr3 60426547 60426859 -167097719 + AluSx SINE Alu 1 307 -5 1701 137 96 31 chr3 60426865 60427158 -167097420 + AluJo SINE Alu 1 312 0 2475 93 0 0 chr3 60429941 60430251 -167094327 - AluSx SINE Alu -2 310 1 212 246 309 18 chr3 60430280 60430390 -167094188 - MIR SINE MIR -57 205 64 2123 136 7 0 chr3 60430571 60430879 -167093699 - AluJb SINE Alu -2 310 1 291 172 23 35 chr3 60430888 60430975 -167093603 - L1ME2 LINE L1 -154 6010 5925 2106 145 3 0 chr3 60430979 60431343 -167093235 + AluJo SINE Alu 1 365 0 1691 158 29 0 chr3 60431427 60431626 -167092952 - AluSx SINE Alu 0 312 119 387 0 0 0 chr3 60431626 60431669 -167092909 + (TG)n Simple_repeat Simple_repeat 2 44 0 1691 158 29 0 chr3 60431669 60431779 -167092799 - AluSx SINE Alu -193 119 14 1343 201 102 0 chr3 60431795 60432059 -167092519 - AluJo SINE Alu -20 292 2 235 143 61 0 chr3 60432067 60432116 -167092462 - L1ME2 LINE L1 -303 5863 5812 2373 101 0 22 chr3 60432138 60432456 -167092122 - AluSx SINE Alu -1 311 1 21 0 0 0 chr3 60432618 60432639 -167091939 + AT_rich Low_complexity Low_complexity 1 21 0 34 84 0 0 chr3 60432771 60432854 -167091724 + AT_rich Low_complexity Low_complexity 1 83 0 579 100 0 0 chr3 60433392 60433472 -167091106 + MADE1 DNA Mariner 1 80 0 2373 110 3 0 chr3 60433565 60433875 -167090703 - AluSx SINE Alu -1 311 1 1273 70 0 19 chr3 60434252 60434409 -167090169 + AluY SINE Alu 1 154 -157 206 104 33 77 chr3 60434538 60434720 -167089858 + (CGG)n Simple_repeat Simple_repeat 1 174 0 234 152 27 45 chr3 60434723 60434835 -167089743 + G-rich Low_complexity Low_complexity 5 114 0 * 408 144 40 17 chr3 60434814 60434988 -167089590 + (CGGGG)n Simple_repeat Simple_repeat 3 180 0 207 259 0 0 chr3 60434989 60435047 -167089531 + G-rich Low_complexity Low_complexity 1 58 0 1992 142 10 19 chr3 60435419 60435730 -167088848 - AluSx SINE Alu -4 308 1 2001 110 34 17 chr3 60435768 60436060 -167088518 - AluSg SINE Alu -13 297 1 1811 94 121 11 chr3 60436081 60436346 -167088232 - AluSg SINE Alu -16 294 1 213 364 45 0 chr3 60436753 60436841 -167087737 + L2 LINE L2 3134 3225 -47 2089 136 0 22 chr3 60436905 60437222 -167087356 + AluJo SINE Alu 1 310 -2 236 224 45 45 chr3 60437270 60437337 -167087241 - MIR3 SINE MIR -34 174 108 206 259 103 0 chr3 60437732 60437790 -167086788 - L2 LINE L2 -49 3223 3160 222 329 26 0 chr3 60437915 60437991 -167086587 - MIR3 SINE MIR -21 187 110 23 68 0 0 chr3 60438121 60438165 -167086413 + AT_rich Low_complexity Low_complexity 1 44 0 2256 101 27 3 chr3 60438509 60438805 -167085773 + AluY SINE Alu 1 303 -8 377 296 107 35 chr3 60438864 60439033 -167085545 + MIR SINE MIR 28 208 -54 1623 206 0 3 chr3 60439837 60440119 -167084459 + AluSx SINE Alu 1 281 -31 1932 154 7 3 chr3 60440499 60440792 -167083786 - AluJo SINE Alu -16 296 3 1076 154 134 8 chr3 60441057 60441325 -167083253 - MER33 DNA MER1_type -36 288 1 451 296 30 53 chr3 60442659 60442828 -167081750 + MIR SINE MIR 27 191 -71 196 339 16 0 chr3 60443075 60443137 -167081441 + L2 LINE L2 3194 3256 -16 366 332 121 59 chr3 60443194 60443450 -167081128 + L2 LINE L2 2996 3267 -5 2198 144 0 0 chr3 60443767 60444073 -167080505 - AluJb SINE Alu -6 306 1 2389 95 3 7 chr3 60444075 60444380 -167080198 - AluSx SINE Alu -6 306 3 686 271 57 6 chr3 60444561 60444738 -167079840 + MIR SINE MIR 76 261 -1 258 299 0 0 chr3 60444792 60444859 -167079719 - MIR3 SINE MIR -32 176 110 499 244 17 8 chr3 60445229 60445348 -167079230 - MIR SINE MIR -32 230 111 1116 70 0 0 chr3 60445466 60445595 -167078983 - AluSg SINE Alu -181 129 1 1902 117 62 0 chr3 60445604 60445877 -167078701 - AluJb SINE Alu -22 290 1 195 326 28 84 chr3 60446288 60446383 -167078195 + L2 LINE L2 2712 2811 -503 2103 117 0 7 chr3 60446383 60446682 -167077896 + AluSg SINE Alu 1 297 -13 195 326 28 84 chr3 60446682 60446693 -167077885 + L2 LINE L2 2811 2821 -493 2147 107 0 13 chr3 60446693 60446991 -167077587 + AluSg SINE Alu 1 294 -16 195 326 28 84 chr3 60446991 60447098 -167077480 + L2 LINE L2 2821 2914 -400 314 281 18 18 chr3 60448116 60448230 -167076348 + MIR SINE MIR 36 149 -59 307 22 0 0 chr3 60448724 60448769 -167075809 - AluY SINE Alu 0 308 264 1736 132 0 0 chr3 60448774 60449016 -167075562 + AluJb SINE Alu 58 299 -13 1169 144 35 48 chr3 60449115 60449344 -167075234 - AluJo SINE Alu -2 310 85 1852 125 66 21 chr3 60450170 60450458 -167074120 + AluJo SINE Alu 1 301 -11 380 263 64 64 chr3 60450629 60450760 -167073818 + MIR SINE MIR 88 221 -41 1373 126 19 0 chr3 60450760 60450975 -167073603 + MER20 DNA MER1_type 1 219 0 380 263 64 64 chr3 60450975 60451014 -167073564 + MIR SINE MIR 220 258 -4 37 39 0 0 chr3 60453812 60453863 -167070715 + AT_rich Low_complexity Low_complexity 1 51 0 331 301 119 34 chr3 60453897 60454133 -167070445 - MIR SINE MIR -3 259 4 203 125 25 0 chr3 60456035 60456075 -167068503 + GA-rich Low_complexity Low_complexity 2 42 0 240 206 147 15 chr3 60456081 60456149 -167068429 + MER5A DNA MER1_type 7 83 -106 1065 85 0 0 chr3 60458192 60458322 -167066256 + AluSq/x SINE Alu 1 130 -182 191 200 185 15 chr3 60458366 60458431 -167066147 + MIR SINE MIR 117 192 -70 274 179 0 0 chr3 60458438 60458477 -167066101 + Alu SINE Alu 1 39 -262 1701 81 0 9 chr3 60458477 60458698 -167065880 + AluY SINE Alu 1 219 -92 183 80 0 0 chr3 60458710 60458735 -167065843 + (A)n Simple_repeat Simple_repeat 1 25 0 686 136 0 19 chr3 60458735 60458838 -167065740 + FLAM_C SINE Alu 27 127 -16 2003 104 0 0 chr3 60459075 60459334 -167065244 + AluSq SINE Alu 3 261 -52 2051 138 7 0 chr3 60459547 60459836 -167064742 - AluJb SINE Alu -21 291 1 226 344 0 10 chr3 60459929 60460025 -167064553 - MIR SINE MIR -98 110 16 262 321 0 0 chr3 60460167 60460251 -167064327 - MIR SINE MIR -3 259 176 487 263 131 5 chr3 60460283 60460481 -167064097 - MIR SINE MIR 0 262 40 295 259 9 65 chr3 60460623 60460731 -167063847 - MIR3 SINE MIR -24 184 83 502 249 52 29 chr3 60460743 60460916 -167063662 - MIR SINE MIR -6 256 80 746 177 31 0 chr3 60462465 60462595 -167061983 + MLT1A2 LTR MaLR 241 374 0 1797 175 0 10 chr3 60462915 60463224 -167061354 - AluJb SINE Alu 0 312 7 189 293 0 17 chr3 60463256 60463314 -167061264 + MIR SINE MIR 39 95 -113 286 216 78 52 chr3 60463375 60463528 -167061050 - L2 LINE L2 -85 3228 3072 2359 155 43 9 chr3 60464473 60464892 -167059686 - Tigger2a DNA MER2_type 0 434 2 2681 30 0 0 chr3 60467264 60467562 -167057016 - AluY SINE Alu -13 298 1 24 0 0 0 chr3 60467861 60467885 -167056693 + AT_rich Low_complexity Low_complexity 1 24 0 2499 93 0 0 chr3 60468477 60468789 -167055789 - AluSx SINE Alu 0 312 1 306 255 14 14 chr3 60468910 60469018 -167055560 - MIR SINE MIR -68 140 41 858 163 0 14 chr3 60469187 60469328 -167055250 + AluJb SINE Alu 141 279 -33 417 20 0 0 chr3 60469332 60469382 -167055196 + (CAAAA)n Simple_repeat Simple_repeat 3 52 0 1186 220 43 0 chr3 60469797 60470052 -167054526 + AluJb SINE Alu 1 266 -46 2533 87 0 0 chr3 60470686 60470996 -167053582 - AluSx SINE Alu -2 310 1 318 263 5 14 chr3 60471117 60471226 -167053352 - MIR SINE MIR -63 145 41 858 163 0 14 chr3 60471395 60471536 -167053042 + AluJb SINE Alu 141 279 -33 237 33 0 0 chr3 60471540 60471570 -167053008 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 1738 151 38 10 chr3 60471985 60472277 -167052301 + AluJb SINE Alu 1 300 -12 3441 171 45 9 chr3 60472312 60472973 -167051605 + L1MB7 LINE L1 5456 6140 -44 670 271 106 25 chr3 60473401 60473939 -167050639 - L1ME LINE L1 -535 5627 5045 215 320 120 8 chr3 60474099 60474224 -167050354 - MIR SINE MIR -14 248 110 456 264 33 8 chr3 60474429 60474550 -167050028 - L2 LINE L2 0 3313 3190 2303 103 0 6 chr3 60474999 60475310 -167049268 + AluSc SINE Alu 1 309 0 1551 255 126 82 chr3 60475525 60476071 -167048507 + L2 LINE L2 1639 2159 -1155 1743 154 10 34 chr3 60476071 60476364 -167048214 + AluJo SINE Alu 16 301 -11 1551 255 126 82 chr3 60476364 60476988 -167047590 + L2 LINE L2 2159 2861 -453 207 191 0 43 chr3 60477149 60477165 -167047413 + A-rich Low_complexity Low_complexity 1 16 -29 2180 106 36 3 chr3 60477165 60477466 -167047112 + AluSx SINE Alu 1 311 -1 207 191 0 43 chr3 60477466 60477496 -167047082 + A-rich Low_complexity Low_complexity 16 45 0 2297 103 0 3 chr3 60477822 60478124 -167046454 + AluSq SINE Alu 1 301 -12 238 88 59 147 chr3 60478422 60478524 -167046054 + L1MC5 LINE L1 7837 7929 -32 2129 138 0 0 chr3 60479215 60479520 -167045058 + AluJb SINE Alu 1 305 -7 2021 189 12 12 chr3 60479573 60479985 -167044593 + L1MB3 LINE L1 5761 6172 -11 300 86 190 0 chr3 60479985 60480043 -167044535 + L1MB2 LINE L1 6101 6169 -2 282 269 102 9 chr3 60480801 60480909 -167043669 + LTR33A LTR ERVL 404 521 -2 811 225 93 119 chr3 60480978 60481767 -167042811 - L2 LINE L2 0 3313 2527 22 56 0 0 chr3 60482078 60482114 -167042464 + AT_rich Low_complexity Low_complexity 1 36 0 1763 168 10 29 chr3 60482375 60482684 -167041894 + AluJb SINE Alu 1 303 -9 32 0 0 0 chr3 60483385 60483417 -167041161 + AT_rich Low_complexity Low_complexity 1 32 0 1522 171 68 14 chr3 60483848 60484128 -167040450 - AluJb SINE Alu -13 299 5 870 85 78 0 chr3 60484894 60485023 -167039555 + MER85 DNA T2_type 1 139 0 1729 140 44 7 chr3 60485151 60485423 -167039155 - AluJb SINE Alu -25 287 6 974 160 11 51 chr3 60485567 60485742 -167038836 + FAM SINE Alu 1 168 -7 2512 59 3 3 chr3 60485937 60486241 -167038337 + AluY SINE Alu 1 304 -7 277 260 124 15 chr3 60487113 60487312 -167037266 + L1ME4a LINE L1 5707 5924 -209 207 0 0 0 chr3 60487730 60487753 -167036825 + (A)n Simple_repeat Simple_repeat 1 23 0 275 208 104 26 chr3 60488733 60488810 -167035768 - L2 LINE L2 -36 3236 3154 27 29 0 0 chr3 60488935 60488969 -167035609 + AT_rich Low_complexity Low_complexity 1 34 0 1837 187 0 0 chr3 60489134 60489439 -167035139 + AluJb SINE Alu 1 305 -7 328 288 136 0 chr3 60489477 60489609 -167034969 - L2 LINE L2 -449 2865 2716 434 285 98 73 chr3 60489704 60489978 -167034600 - L2 LINE L2 0 3272 2992 798 187 0 8 chr3 60490072 60490206 -167034372 + FLAM_C SINE Alu 1 133 0 21 57 0 0 chr3 60490343 60490378 -167034200 + AT_rich Low_complexity Low_complexity 1 35 0 1891 131 21 14 chr3 60490416 60490707 -167033871 + AluSx SINE Alu 4 296 -16 49 32 0 0 chr3 60490707 60490770 -167033808 + AT_rich Low_complexity Low_complexity 1 63 0 1433 163 38 48 chr3 60490773 60491062 -167033516 + AluSx SINE Alu 1 286 -26 1966 126 25 11 chr3 60491727 60492012 -167032566 - AluSx SINE Alu -23 289 1 200 287 43 35 chr3 60492664 60492779 -167031799 - L2 LINE L2 -936 2378 2263 26 0 0 0 chr3 60493639 60493665 -167030913 + AT_rich Low_complexity Low_complexity 1 26 0 1222 160 0 67 chr3 60493810 60493945 -167030633 + AluJo SINE Alu 1 117 -195 2097 108 24 7 chr3 60493945 60494233 -167030345 + AluSq SINE Alu 1 293 -20 1222 160 0 67 chr3 60494233 60494322 -167030256 + AluJo SINE Alu 117 210 -102 2260 119 22 14 chr3 60495402 60495764 -167028814 + L1MB3 LINE L1 5810 6174 -9 1110 144 0 24 chr3 60495774 60495932 -167028646 - AluSg/x SINE Alu -33 279 124 410 97 28 28 chr3 60495932 60496004 -167028574 - L1PA10 LINE L1 0 6168 6097 1623 161 25 62 chr3 60496919 60497241 -167027337 - AluJb SINE Alu -2 310 1 2296 110 0 13 chr3 60497539 60497848 -167026730 + AluSq SINE Alu 6 310 -3 1867 143 10 14 chr3 60498467 60498760 -167025818 - AluJo SINE Alu -20 292 1 746 171 122 44 chr3 60500015 60500220 -167024358 + L1ME3 LINE L1 5940 6160 -2 306 380 48 0 chr3 60500383 60500549 -167024029 - MIR3 SINE MIR -7 201 28 25 83 0 0 chr3 60501233 60501293 -167023285 + GC_rich Low_complexity Low_complexity 1 60 0 43 85 0 0 chr3 60501397 60501503 -167023075 + GC_rich Low_complexity Low_complexity 1 106 0 48 60 0 0 chr3 60501691 60501774 -167022804 + GC_rich Low_complexity Low_complexity 1 83 0 245 182 13 39 chr3 60501776 60501853 -167022725 + C-rich Low_complexity Low_complexity 4 78 0 31 44 0 0 chr3 60501908 60501953 -167022625 + GC_rich Low_complexity Low_complexity 1 45 0 216 299 15 15 chr3 60501996 60502130 -167022448 + (CTCG)n Simple_repeat Simple_repeat 2 135 0 322 280 151 38 chr3 60503920 60504106 -167020472 - L1M4 LINE L1 -749 5397 5191 1011 183 6 0 chr3 60504344 60504508 -167020070 + FRAM SINE Alu 1 161 -15 2483 64 0 3 chr3 60504508 60504804 -167019774 + AluY SINE Alu 1 295 -16 403 308 119 0 chr3 60505054 60505197 -167019381 + MIR SINE MIR 6 165 -97 2534 67 0 3 chr3 60505198 60505497 -167019081 + AluY SINE Alu 1 298 -13 187 381 25 31 chr3 60505584 60505744 -167018834 + L2 LINE L2 1796 1954 -1360 2210 155 43 9 chr3 60507868 60508287 -167016291 + Tigger2a DNA MER2_type 2 434 0 2059 113 58 7 chr3 60508443 60508736 -167015842 - AluSx SINE Alu -4 308 1 723 147 0 23 chr3 60508762 60508891 -167015687 - FLAM_A SINE Alu 0 142 17 324 191 16 0 chr3 60509006 60509069 -167015509 + MER58 DNA MER1_type 2357 2420 0 753 270 71 0 chr3 60509729 60509925 -167014653 - MIR SINE MIR -38 224 15 231 308 154 15 chr3 60509900 60510030 -167014548 + MER5A DNA MER1_type 14 161 -28 * 2219 112 7 10 chr3 60510056 60510359 -167014219 - AluSq SINE Alu -11 302 1 392 315 83 52 chr3 60510792 60511141 -167013437 - L2 LINE L2 -49 3223 2864 194 0 39 0 chr3 60512182 60512208 -167012370 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1895 151 7 0 chr3 60512219 60512498 -167012080 + AluJb SINE Alu 12 292 -20 660 206 24 36 chr3 60512565 60512730 -167011848 + MIR SINE MIR 86 248 -14 187 311 16 0 chr3 60512774 60512835 -167011743 + MIR SINE MIR 68 129 -79 339 123 27 14 chr3 60512898 60512971 -167011607 + CT-rich Low_complexity Low_complexity 1 74 0 4292 150 60 3 chr3 60512972 60513752 -167010826 - L1MB7 LINE L1 -47 6137 5313 185 222 0 0 chr3 60513760 60513796 -167010782 - L2 LINE L2 -9 3263 3228 391 261 90 0 chr3 60514254 60514388 -167010190 + MIR SINE MIR 60 205 -57 429 291 66 90 chr3 60515303 60515755 -167008823 - L1M4c LINE L1 -1301 1520 803 231 301 31 18 chr3 60515826 60515989 -167008589 + (TGAG)n Simple_repeat Simple_repeat 4 168 0 * 440 304 12 0 chr3 60515886 60516047 -167008531 + (TG)n Simple_repeat Simple_repeat 1 163 0 244 279 7 36 chr3 60516063 60516203 -167008375 + (TG)n Simple_repeat Simple_repeat 1 136 0 422 261 206 12 chr3 60516397 60516563 -167008015 - MIR3 SINE MIR -7 201 11 324 0 0 0 chr3 60516585 60516621 -167007957 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 466 296 43 6 chr3 60517180 60517342 -167007236 - MIR SINE MIR -32 230 63 251 301 249 6 chr3 60517566 60517739 -167006839 - MIR SINE MIR -21 241 27 442 255 117 7 chr3 60518030 60518175 -167006403 + MIR SINE MIR 87 247 -15 210 115 0 154 chr3 60518143 60518195 -167006383 + L2 LINE L2 3220 3263 -9 * 887 168 45 0 chr3 60518596 60518775 -167005803 + LTR33A LTR ERVL 329 515 -8 231 229 125 10 chr3 60518950 60519046 -167005532 - LTR33A LTR ERVL -229 294 188 241 267 12 47 chr3 60519202 60519288 -167005290 + MIR3 SINE MIR 126 208 0 2252 115 16 0 chr3 60519550 60519854 -167004724 - AluSx SINE Alu -3 309 1 326 250 25 0 chr3 60520419 60520499 -167004079 - MIR SINE MIR -104 158 77 391 256 105 124 chr3 60521053 60521311 -167003267 + L2 LINE L2 3020 3272 0 194 230 30 150 chr3 60521309 60521409 -167003169 - MIR SINE MIR -61 201 114 * 540 261 53 21 chr3 60522059 60522247 -167002331 + MER117 DNA MER1_type 2 195 -2 561 299 6 0 chr3 60523116 60523280 -167001298 + MIR SINE MIR 82 246 -16 2122 101 0 4 chr3 60523796 60524063 -167000515 + AluSx SINE Alu 17 282 -30 1380 123 14 19 chr3 60524192 60524404 -167000174 + AluSg/x SINE Alu 97 307 -5 866 143 0 15 chr3 60525304 60525437 -166999141 + AluJo SINE Alu 21 151 -161 841 175 0 0 chr3 60525749 60525875 -166998703 + AluJo/FLAM SINE Alu 2 127 -185 549 148 0 0 chr3 60525875 60525963 -166998615 + AluJ/FRAM SINE Alu 217 304 -8 910 222 0 21 chr3 60526085 60526279 -166998299 + MLT2B2 LTR ERVL 1 190 -325 1560 113 185 69 chr3 60526285 60526482 -166998096 - MER4A LTR ERV1 0 664 491 2063 96 78 3 chr3 60526482 60526764 -166997814 + AluSg SINE Alu 1 303 -7 1560 113 185 69 chr3 60526764 60526928 -166997650 - MER4A LTR ERV1 -173 491 261 248 73 24 24 chr3 60526928 60526969 -166997609 - MER4A LTR ERV1 -566 98 58 248 114 0 0 chr3 60526985 60527020 -166997558 + Alu SINE Alu 265 299 -21 333 0 0 0 chr3 60527020 60527057 -166997521 + (TAAA)n Simple_repeat Simple_repeat 3 39 0 680 214 24 13 chr3 60527063 60527237 -166997341 + MLT2B1 LTR ERVL 217 446 -74 180 0 0 0 chr3 60527237 60527257 -166997321 + (T)n Simple_repeat Simple_repeat 1 20 0 1559 215 0 0 chr3 60527376 60527660 -166996918 + AluJb SINE Alu 27 310 -2 2196 135 25 38 chr3 60527666 60528059 -166996519 - MSTB LTR MaLR -38 388 1 1995 162 97 2 chr3 60528059 60528473 -166996105 - L1MB3 LINE L1 -108 6075 5623 346 188 83 47 chr3 60528765 60528887 -166995691 + L1ME2 LINE L1 5983 6108 -58 1895 136 65 4 chr3 60528902 60529181 -166995397 + AluSg SINE Alu 1 296 -14 655 154 9 0 chr3 60530193 60530303 -166994275 + HY1 scRNA scRNA 1 111 -1 306 0 0 0 chr3 60530303 60530337 -166994241 + (A)n Simple_repeat Simple_repeat 1 34 0 261 0 0 0 chr3 60530822 60530851 -166993727 + (T)n Simple_repeat Simple_repeat 1 29 0 249 191 0 0 chr3 60531245 60531292 -166993286 - L1ME4a LINE L1 -85 6036 5990 369 171 3 26 chr3 60531376 60531457 -166993121 - AluS SINE Alu -242 60 1 346 188 83 47 chr3 60532099 60532221 -166992357 + L1ME2 LINE L1 5983 6108 -58 1962 96 77 0 chr3 60532236 60532496 -166992082 + AluSg SINE Alu 1 280 -30 669 170 0 0 chr3 60532497 60532603 -166991975 - AluJb SINE Alu -17 295 190 1705 142 4 16 chr3 60532778 60533031 -166991547 - AluSx SINE Alu -62 250 1 220 271 9 65 chr3 60534510 60534617 -166989961 + L2 LINE L2 2884 2984 -329 246 285 29 87 chr3 60534777 60534984 -166989594 + L2 LINE L2 2862 3056 -216 2234 106 3 0 chr3 60535003 60535295 -166989283 - AluSx SINE Alu -9 303 11 195 245 0 0 chr3 60535408 60535457 -166989121 - L2 LINE L2 -14 3258 3210 228 176 59 0 chr3 60535502 60535553 -166989025 - MIR SINE MIR -91 117 64 236 234 106 21 chr3 60536038 60536132 -166988446 + MIR SINE MIR 48 149 -59 216 240 40 13 chr3 60536325 60536400 -166988178 - MIR SINE MIR -147 115 39 196 229 180 0 chr3 60536476 60536537 -166988041 + MIR SINE MIR 81 152 -56 421 285 126 34 chr3 60537303 60537767 -166986811 - L2 LINE L2 -199 3073 2564 354 162 15 0 chr3 60539334 60539402 -166985176 - MIR SINE MIR -66 142 74 234 0 0 0 chr3 60540503 60540529 -166984049 + (CGGGG)n Simple_repeat Simple_repeat 2 27 0 218 228 272 9 chr3 60541313 60541427 -166983151 - MIR SINE MIR -68 194 51 432 323 18 42 chr3 60542302 60542469 -166982109 - MIR SINE MIR -54 208 46 1162 184 9 9 chr3 60542905 60543117 -166981461 + MER20 DNA MER1_type 1 212 -7 508 244 12 38 chr3 60543127 60543287 -166981291 + MIR SINE MIR 21 176 -86 215 299 63 8 chr3 60543716 60543843 -166980735 - L2 LINE L2 -227 3045 2912 225 94 0 0 chr3 60544373 60544405 -166980173 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 210 159 0 23 chr3 60544989 60545033 -166979545 + (CGGGG)n Simple_repeat Simple_repeat 5 47 0 2030 131 90 3 chr3 60545205 60545595 -166978983 - L1MA1 LINE L1 0 6302 5879 24 0 0 0 chr3 60547367 60547391 -166977187 + AT_rich Low_complexity Low_complexity 1 24 0 225 297 72 27 chr3 60547483 60547594 -166976984 - L2 LINE L2 -18 3295 3180 181 269 58 0 chr3 60547832 60547884 -166976694 - L2 LINE L2 -1 3312 3258 209 284 74 0 chr3 60548697 60548778 -166975800 + MIR SINE MIR 60 146 -116 871 179 104 0 chr3 60549556 60549729 -166974849 - AluJb SINE Alu -6 306 116 2102 117 3 10 chr3 60549908 60550206 -166974372 - AluSx SINE Alu -16 296 1 494 126 58 0 chr3 60550593 60550680 -166973898 - L1MB3 LINE L1 -7 6176 6085 1990 199 11 87 chr3 60550681 60551293 -166973285 - L1MC4 LINE L1 -2180 5862 5297 2045 117 34 7 chr3 60551366 60551664 -166972914 - AluSx SINE Alu -6 306 1 1702 195 0 0 chr3 60551947 60552229 -166972349 + AluJo SINE Alu 1 282 -30 336 240 116 8 chr3 60552459 60552580 -166971998 - MIR SINE MIR 0 262 129 1726 156 56 41 chr3 60552797 60553136 -166971442 + MER7A DNA MER2_type 4 345 -1 2165 94 0 24 chr3 60553897 60554184 -166970394 - AluSg SINE Alu -30 280 1 2311 100 0 3 chr3 60554351 60554650 -166969928 - AluSq SINE Alu -15 298 1 1975 156 0 10 chr3 60554652 60554959 -166969619 - AluSx SINE Alu -8 304 1 3671 163 56 62 chr3 60555225 60555282 -166969296 + L1MD2 LINE L1 5530 5586 -773 2006 102 4 8 chr3 60555282 60555548 -166969030 - AluSq SINE Alu -12 301 37 3671 163 56 62 chr3 60555548 60556323 -166968255 + L1MD2 LINE L1 5586 6357 -2 196 264 57 0 chr3 60556397 60556450 -166968128 - L2 LINE L2 -48 3265 3210 1182 219 66 52 chr3 60556475 60556628 -166967950 - L2 LINE L2 -78 3235 3086 2093 114 4 4 chr3 60556628 60556932 -166967646 - AluSx SINE Alu 0 306 3 1898 156 0 7 chr3 60556935 60556948 -166967630 - AluJo SINE Alu -13 299 287 243 0 0 0 chr3 60556948 60556975 -166967603 + (TTAAA)n Simple_repeat Simple_repeat 1 27 0 1898 156 0 7 chr3 60556975 60557262 -166967316 - AluJo SINE Alu -25 287 1 1182 219 66 52 chr3 60557262 60557282 -166967296 - L2 LINE L2 -228 3085 3067 1939 163 3 0 chr3 60557282 60557577 -166967001 - AluSx SINE Alu -16 296 1 1182 219 66 52 chr3 60557577 60557967 -166966611 - L2 LINE L2 -246 3067 2668 1531 160 59 26 chr3 60558080 60558387 -166966191 - THE1C LTR MaLR -58 317 1 597 237 0 0 chr3 60558388 60558506 -166966072 + L1M4 LINE L1 3463 3580 -2566 1696 146 90 0 chr3 60558930 60559198 -166965380 - AluJb SINE Alu -20 292 1 546 175 31 0 chr3 60560009 60560106 -166964472 + L1MA5 LINE L1 6017 6116 -184 2368 68 14 14 chr3 60560399 60560695 -166963883 - AluSp SINE Alu -17 296 1 850 194 18 24 chr3 60560697 60560867 -166963711 - FRAM SINE Alu -8 168 1 1217 149 60 0 chr3 60561482 60561683 -166962895 + AluJo SINE Alu 1 213 -99 1702 32 55 23 chr3 60561783 60562001 -166962577 + AluY SINE Alu 71 295 -16 1622 154 15 98 chr3 60562006 60562344 -166962234 + AluJb SINE Alu 3 312 0 1145 151 0 6 chr3 60562893 60563072 -166961506 + AluJo SINE Alu 1 178 -134 1130 150 25 5 chr3 60563071 60563271 -166961307 + AluJb SINE Alu 101 304 -8 * 2404 105 0 0 chr3 60563570 60563875 -166960703 - AluSx SINE Alu -7 305 1 1854 157 14 0 chr3 60563912 60564205 -166960373 - AluJb SINE Alu -15 297 1 1163 241 35 48 chr3 60564324 60564697 -166959881 + MLT1A2 LTR MaLR 1 368 -6 700 193 7 7 chr3 60565435 60565575 -166959003 + L1MB8 LINE L1 6022 6161 -17 2133 114 0 39 chr3 60566189 60566496 -166958082 - AluSg SINE Alu -15 295 1 1721 214 69 25 chr3 60566561 60566959 -166957619 - L1ME1 LINE L1 -84 6082 5658 2279 108 0 7 chr3 60566959 60567264 -166957314 - AluSx SINE Alu -8 304 2 1721 214 69 25 chr3 60567264 60567341 -166957237 - L1ME1 LINE L1 -508 5658 5586 375 233 78 0 chr3 60567328 60567457 -166957121 - L1ME1 LINE L1 -1098 5048 4910 * 721 121 0 0 chr3 60568076 60568175 -166956403 + FLAM_C SINE Alu 29 127 -16 934 90 17 119 chr3 60568276 60568349 -166956229 - L1M3 LINE L1 -654 5526 5447 1961 145 0 7 chr3 60568349 60568653 -166955925 + AluJb SINE Alu 2 303 -9 934 90 17 119 chr3 60568653 60568756 -166955822 - L1M3 LINE L1 -733 5447 5368 1107 178 5 5 chr3 60568852 60569043 -166955535 - MER46A DNA MER2_type 0 236 46 852 127 0 45 chr3 60569048 60569182 -166955396 - AluSg/x SINE Alu -13 299 172 478 121 0 0 chr3 60569182 60569248 -166955330 - AluSg/x SINE Alu -109 201 136 1674 176 24 41 chr3 60569255 60569670 -166954908 + L1MEc LINE L1 1957 2364 -4032 1438 189 17 41 chr3 60569670 60569803 -166954775 + AluJo SINE Alu 1 136 -202 2618 62 0 3 chr3 60569803 60570112 -166954466 + AluY SINE Alu 1 308 -3 2464 91 0 3 chr3 60570119 60570426 -166954152 + AluSp SINE Alu 1 306 -7 1438 189 17 41 chr3 60570426 60570629 -166953949 + AluJo SINE Alu 142 338 0 888 159 14 0 chr3 60570632 60570770 -166953808 + FRAM SINE Alu 5 144 -32 728 233 37 0 chr3 60570787 60570976 -166953602 + L1MEc LINE L1 2317 2512 -3703 410 100 100 80 chr3 60570992 60571058 -166953520 + MER41A LTR ERV1 365 435 -119 2419 92 0 3 chr3 60571058 60571362 -166953216 - AluSg SINE Alu -7 303 1 410 100 100 80 chr3 60571362 60571395 -166953183 + MER41A LTR ERV1 435 466 -88 1985 191 135 0 chr3 60571422 60571882 -166952696 + L1MEc LINE L1 2526 3047 -3168 326 140 0 0 chr3 60571892 60571949 -166952629 + L1MEc LINE L1 3454 3510 -2705 1343 169 0 5 chr3 60571959 60572172 -166952406 + AluSx SINE Alu 1 212 -100 602 94 47 0 chr3 60572172 60572257 -166952321 + AluSg/x SINE Alu 76 164 -146 441 117 13 0 chr3 60572357 60572434 -166952144 + L1MB4 LINE L1 6103 6180 0 369 0 0 0 chr3 60572475 60572516 -166952062 + (TA)n Simple_repeat Simple_repeat 1 41 0 2380 100 3 3 chr3 60572815 60573126 -166951452 - AluSx SINE Alu -1 311 1 2348 130 19 16 chr3 60573418 60573674 -166950904 + LTR8A LTR ERV1 1 260 -467 605 76 0 0 chr3 60573674 60573753 -166950825 - MADE1 DNA Mariner 0 80 2 2348 130 19 16 chr3 60573753 60573873 -166950705 + LTR8A LTR ERV1 260 378 -349 1993 121 10 46 chr3 60573878 60574185 -166950393 - AluSx SINE Alu -16 296 1 647 109 0 11 chr3 60574185 60574271 -166950307 - AluS SINE Alu -226 86 2 632 126 0 0 chr3 60574271 60574358 -166950220 - AluJ/FLAM SINE Alu -224 88 2 1044 122 149 50 chr3 60574359 60574621 -166949957 + LTR8A LTR ERV1 373 660 -67 1428 121 0 5 chr3 60574621 60574820 -166949758 - AluSc SINE Alu -8 301 104 596 155 0 0 chr3 60574822 60574906 -166949672 + LTR8 LTR ERV1 608 691 0 1797 146 21 10 chr3 60575294 60575582 -166948996 - AluSx SINE Alu -1 311 21 608 271 54 5 chr3 60575948 60576151 -166948427 - L1MEc LINE L1 -4591 1805 1593 292 268 5 110 chr3 60576164 60576373 -166948205 - L1MEc LINE L1 -4767 1629 1443 1018 150 6 6 chr3 60576376 60576536 -166948042 - FRAM SINE Alu -4 172 13 2289 96 13 0 chr3 60576638 60576940 -166947638 - AluSp SINE Alu -7 306 1 2201 150 74 0 chr3 60576942 60577322 -166947256 - Tigger7 DNA MER2_type -289 444 37 1333 153 66 17 chr3 60577317 60577558 -166947020 - MER7A DNA MER2_type -94 252 2 * 263 148 56 0 chr3 60577558 60577603 -166946975 + MLT2B2 LTR ERVL 468 515 0 534 211 0 0 chr3 60577642 60577746 -166946832 - U13 snRNA snRNA 0 104 1 24 0 0 0 chr3 60577897 60577921 -166946657 + AT_rich Low_complexity Low_complexity 1 24 0 1735 89 9 0 chr3 60578973 60579197 -166945381 - AluSg/x SINE Alu -2 308 83 234 0 0 0 chr3 60581787 60581813 -166942765 + (T)n Simple_repeat Simple_repeat 1 26 0 252 191 0 0 chr3 60582208 60582255 -166942323 - L1ME4a LINE L1 -85 6036 5990 339 307 188 0 chr3 60582545 60582721 -166941857 + L1ME4a LINE L1 5488 5696 -425 235 304 13 0 chr3 60582990 60583069 -166941509 + L1ME4a LINE L1 5975 6054 -67 1439 200 59 7 chr3 60583186 60583476 -166941102 - AluJo SINE Alu -7 305 1 1760 162 16 38 chr3 60583483 60583797 -166940781 - AluJo SINE Alu -5 307 1 2345 100 0 3 chr3 60583986 60584286 -166940292 + AluSc SINE Alu 1 299 -10 1615 182 7 17 chr3 60584374 60584670 -166939908 + AluJb SINE Alu 1 293 -19 822 159 14 28 chr3 60586867 60587012 -166937566 - FRAM SINE Alu -30 146 4 2396 73 13 0 chr3 60587386 60587687 -166936891 - AluY SINE Alu -6 305 1 1456 159 0 0 chr3 60588117 60588331 -166936247 + AluJb SINE Alu 85 298 -14 806 140 9 0 chr3 60588539 60588653 -166935925 + AluJb SINE Alu 1 115 -197 2528 68 0 3 chr3 60588857 60589165 -166935413 - AluY SINE Alu -4 307 1 869 167 105 154 chr3 60589547 60589853 -166934725 - AluJo SINE Alu -9 293 3 2234 104 3 0 chr3 60590262 60590575 -166934003 - AluSp SINE Alu 0 314 1 751 213 0 0 chr3 60590680 60590807 -166933771 + FLAM_A SINE Alu 1 127 -6 1875 152 16 25 chr3 60591132 60591447 -166933131 + AluJo SINE Alu 1 312 0 435 286 136 14 chr3 60592099 60592319 -166932259 + L1ME4a LINE L1 5738 5984 -137 23 0 0 0 chr3 60592346 60592369 -166932209 + AT_rich Low_complexity Low_complexity 1 23 0 2027 143 0 7 chr3 60593231 60593497 -166931081 - AluSx SINE Alu 0 400 135 2345 110 0 0 chr3 60593497 60593797 -166930781 - AluSg SINE Alu -10 300 1 2027 143 0 7 chr3 60593797 60593932 -166930646 - AluSx SINE Alu -265 135 1 226 267 60 26 chr3 60593945 60593999 -166930579 - L1ME4a LINE L1 -5 6116 6065 1833 165 7 7 chr3 60593999 60594296 -166930282 - AluJo SINE Alu -15 297 1 226 267 60 26 chr3 60594296 60594357 -166930221 - L1ME4a LINE L1 -56 6065 5997 1633 167 20 39 chr3 60594416 60594554 -166930024 + AluJo SINE Alu 1 140 -172 2379 93 0 7 chr3 60594554 60594856 -166929722 + AluSx SINE Alu 1 300 -12 1633 167 20 39 chr3 60594856 60595022 -166929556 + AluJo SINE Alu 140 299 -13 1657 126 23 114 chr3 60595148 60595490 -166929088 + AluYb8 SINE Alu 1 311 -7 325 322 25 20 chr3 60595528 60595730 -166928848 - L1ME4a LINE L1 -265 5856 5654 201 39 0 0 chr3 60596424 60596450 -166928128 + (TC)n Simple_repeat Simple_repeat 2 27 0 1951 158 24 0 chr3 60596450 60596741 -166927837 - AluJb SINE Alu -14 298 1 267 200 0 43 chr3 60596779 60596849 -166927729 - L1MB7 LINE L1 -20 6164 6098 2018 167 60 45 chr3 60596856 60597322 -166927256 - MER21B LTR ERV1 0 863 391 429 216 25 166 chr3 60597300 60597541 -166927037 - MER21B LTR ERV1 -652 211 5 * 2264 120 0 0 chr3 60597550 60597858 -166926720 + AluSx SINE Alu 1 308 -4 259 154 0 0 chr3 60597858 60597910 -166926668 + L1M2 LINE L1 5729 5780 -511 2295 105 3 0 chr3 60597910 60598215 -166926363 + AluSg SINE Alu 1 306 -4 815 173 0 0 chr3 60598227 60598354 -166926224 + FRAM SINE Alu 34 160 -16 2177 97 0 31 chr3 60598357 60598678 -166925900 + AluSx SINE Alu 1 311 -1 476 110 158 0 chr3 60598790 60598872 -166925706 - AluJb SINE Alu -8 304 210 963 201 37 45 chr3 60598978 60599247 -166925331 - AluJb SINE Alu -45 267 1 2752 211 12 21 chr3 60599250 60599821 -166924757 - L1MB8 LINE L1 -116 6062 5498 2119 119 3 13 chr3 60599821 60600133 -166924445 - AluSg SINE Alu -1 309 1 2752 211 12 21 chr3 60600133 60600252 -166924326 - L1MB8 LINE L1 -680 5498 5379 459 110 27 0 chr3 60600280 60600353 -166924225 + MLT2C1 LTR ERVL 1 75 -322 2083 113 3 7 chr3 60600353 60600655 -166923923 - AluSg SINE Alu -9 301 1 1584 151 4 8 chr3 60600660 60600919 -166923659 - AluSx SINE Alu -5 307 50 200 330 70 20 chr3 60601800 60601900 -166922678 + MIR SINE MIR 99 203 -59 2290 92 0 0 chr3 60602047 60602341 -166922237 + AluSg SINE Alu 1 294 -16 965 93 7 14 chr3 60602701 60602840 -166921738 - AluSq/x SINE Alu -174 138 1 1556 145 48 0 chr3 60602861 60602987 -166921591 - AluJb SINE Alu -52 260 142 402 21 0 0 chr3 60602987 60603034 -166921544 + (TG)n Simple_repeat Simple_repeat 2 48 0 1556 145 48 0 chr3 60603034 60603155 -166921423 - AluJb SINE Alu -170 142 1 674 175 0 0 chr3 60603295 60603398 -166921180 - FLAM_A SINE Alu -28 114 12 2276 105 0 0 chr3 60603501 60603806 -166920772 - AluSx SINE Alu -7 305 1 522 211 114 0 chr3 60603811 60603925 -166920653 - FLAM_C SINE Alu -5 128 2 303 196 0 22 chr3 60604009 60604101 -166920477 + MER20B DNA MER1_type 664 753 -30 1297 165 34 11 chr3 60604788 60605041 -166919537 - MSTB1 LTR MaLR 0 432 171 2072 148 3 0 chr3 60605041 60605352 -166919226 + AluSx SINE Alu 1 312 0 1297 165 34 11 chr3 60605352 60605365 -166919213 - MSTB1 LTR MaLR -261 171 160 776 196 18 0 chr3 60605407 60605575 -166919003 - MSTB1 LTR MaLR -242 184 14 1503 194 23 26 chr3 60605786 60606095 -166918483 - AluJo SINE Alu -4 308 1 1953 120 10 42 chr3 60606921 60607229 -166917349 + AluSx SINE Alu 1 298 -14 320 351 18 0 chr3 60607774 60607888 -166916690 - L2 LINE L2 0 3313 3198 262 333 38 8 chr3 60607967 60608099 -166916479 - L2 LINE L2 -322 2991 2856 2260 164 56 126 chr3 60608462 60609177 -166915401 - MER21A LTR ERV1 -6 925 261 617 189 16 0 chr3 60609334 60609456 -166915122 - MER39 LTR ERV1 -319 388 265 506 158 169 87 chr3 60609437 60609620 -166914958 - MER21A LTR ERV1 -733 198 1 * 223 289 0 67 chr3 60610304 60610394 -166914184 + MIR SINE MIR 122 205 -57 1696 187 3 0 chr3 60610673 60610967 -166913611 + AluJb SINE Alu 1 295 -17 2174 78 18 0 chr3 60610996 60611278 -166913300 + AluSp SINE Alu 1 287 -26 239 261 130 0 chr3 60611327 60611396 -166913182 + MIR SINE MIR 67 144 -118 205 135 39 0 chr3 60611620 60611672 -166912906 + (CCCCG)n Simple_repeat Simple_repeat 5 58 0 24 0 0 0 chr3 60611682 60611706 -166912872 + GC_rich Low_complexity Low_complexity 1 24 0 30 45 0 0 chr3 60611898 60611942 -166912636 + GC_rich Low_complexity Low_complexity 1 44 0 373 307 92 18 chr3 60612276 60612439 -166912139 - MIR SINE MIR -75 187 13 242 316 30 45 chr3 60612942 60613075 -166911503 + MIR SINE MIR 93 223 -39 348 242 92 9 chr3 60613665 60613779 -166910799 - MIR SINE MIR -65 143 70 893 133 0 0 chr3 60613826 60613954 -166910624 + AluJo/FLAM SINE Alu 1 128 -174 885 155 0 7 chr3 60613954 60614090 -166910488 - AluSg/x SINE Alu -20 290 156 861 145 54 11 chr3 60614190 60614304 -166910274 - L1MB7 LINE L1 -237 5947 5820 1356 175 44 40 chr3 60614304 60614601 -166909977 - AluJb SINE Alu -14 298 1 861 145 54 11 chr3 60614601 60614672 -166909906 - L1MB7 LINE L1 -364 5820 5754 350 289 44 0 chr3 60614686 60614776 -166909802 + MIR SINE MIR 53 146 -62 343 269 186 14 chr3 60614782 60614927 -166909651 - MIR SINE MIR -8 254 85 544 264 207 32 chr3 60614931 60615245 -166909333 - L2 LINE L2 -8 3305 2937 1649 98 25 20 chr3 60615300 60615544 -166909034 - AluSx SINE Alu -6 306 62 2227 99 0 0 chr3 60615579 60615873 -166908705 - AluSq SINE Alu -9 304 11 2275 91 7 0 chr3 60616078 60616387 -166908191 - AluSp SINE Alu -2 311 1 366 290 55 65 chr3 60616446 60616660 -166907918 - L1MC4a LINE L1 -1902 5906 5694 2130 138 0 0 chr3 60616660 60616972 -166907606 - AluSx SINE Alu 0 312 1 366 290 55 65 chr3 60616972 60617067 -166907511 - L1MC4a LINE L1 -2114 5694 5600 240 243 0 27 chr3 60617071 60617145 -166907433 - L1MC4a LINE L1 -2653 3493 3422 2160 120 0 3 chr3 60617147 60617456 -166907122 - AluSx SINE Alu -4 308 1 2276 99 0 7 chr3 60617633 60617936 -166906642 - AluSq SINE Alu -12 301 1 216 0 0 0 chr3 60619609 60619633 -166904945 + (AGCTG)n Simple_repeat Simple_repeat 1 24 0 356 194 0 86 chr3 60622343 60622436 -166902142 - MIR SINE MIR -129 133 49 416 258 180 6 chr3 60622826 60622993 -166901585 - MIR SINE MIR -59 203 8 1392 170 16 12 chr3 60623398 60623645 -166900933 + AluJo SINE Alu 45 292 -20 2183 140 39 22 chr3 60623672 60624030 -166900548 - THE1B LTR MaLR 0 364 1 252 288 25 76 chr3 60624065 60624183 -166900395 - MIR SINE MIR -35 227 116 2289 89 0 16 chr3 60625004 60625318 -166899260 - AluSc SINE Alu 0 309 1 360 0 0 0 chr3 60625423 60625463 -166899115 + (TG)n Simple_repeat Simple_repeat 2 41 0 338 276 35 79 chr3 60625466 60625545 -166899033 - L1ME4a LINE L1 -216 5905 5824 2134 118 0 13 chr3 60625545 60625851 -166898727 - AluSx SINE Alu -4 308 7 338 276 35 79 chr3 60625851 60625974 -166898604 - L1ME4a LINE L1 -297 5824 5712 251 261 34 17 chr3 60626876 60626964 -166897614 + MIR SINE MIR 17 102 -106 192 339 69 31 chr3 60628798 60628928 -166895650 - MIR SINE MIR -112 150 16 412 279 144 19 chr3 60628932 60629140 -166895438 + MIR SINE MIR 29 262 0 185 225 0 25 chr3 60629963 60630003 -166894575 - MIR SINE MIR -189 73 35 237 247 62 10 chr3 60630389 60630486 -166894092 - MIR SINE MIR -59 149 48 244 276 31 41 chr3 60631787 60631885 -166892693 - MIR SINE MIR -86 122 26 222 291 185 33 chr3 60633011 60633162 -166891416 - L3 LINE CR1 -79 1498 1325 188 33 0 33 chr3 60634964 60634994 -166889584 + (TTTC)n Simple_repeat Simple_repeat 3 31 0 187 299 182 0 chr3 60635050 60635127 -166889451 - L2 LINE L2 -13 3259 3169 408 301 102 0 chr3 60635152 60635318 -166889260 + MIR SINE MIR 8 190 -72 771 151 7 29 chr3 60636739 60636878 -166887700 + AluJb SINE Alu 1 136 -176 199 314 57 0 chr3 60637808 60637878 -166886700 - MER5A DNA MER1_type -1 188 115 183 253 36 48 chr3 60638366 60638449 -166886129 - MIR SINE MIR -90 118 37 472 299 109 5 chr3 60639416 60639617 -166884961 + MIR SINE MIR 33 254 -8 974 192 53 53 chr3 60639865 60639926 -166884652 - L1MEc LINE L1 -5471 925 865 2496 71 0 0 chr3 60639926 60640234 -166884344 - AluY SINE Alu -3 308 1 974 192 53 53 chr3 60640234 60640265 -166884313 - L1MEc LINE L1 -5531 865 835 2069 141 0 3 chr3 60640265 60640569 -166884009 - AluSx SINE Alu -9 303 1 974 192 53 53 chr3 60640569 60640777 -166883801 - L1MEc LINE L1 -5560 836 624 1376 148 10 0 chr3 60640780 60640989 -166883589 - AluJo SINE Alu -16 296 86 1983 220 42 37 chr3 60640990 60641586 -166882992 - L1MEc LINE L1 -5762 634 36 250 308 0 22 chr3 60641599 60641690 -166882888 + L1MC/D LINE L1 5764 5852 -1933 996 144 0 24 chr3 60641702 60641869 -166882709 - AluSg/x SINE Alu -15 297 135 2162 135 0 0 chr3 60641871 60642183 -166882395 - AluSx SINE Alu 0 312 1 2144 96 45 0 chr3 60642258 60642550 -166882028 - AluSg SINE Alu -5 305 1 1739 126 44 41 chr3 60642550 60642844 -166881734 - AluJb SINE Alu -7 305 11 204 388 30 0 chr3 60643596 60643730 -166880848 + L2 LINE L2 2905 3042 -230 2304 164 6 50 chr3 60644170 60644272 -166880306 - MER66B LTR ERV1 0 486 381 2104 97 7 27 chr3 60644272 60644570 -166880008 - AluSq SINE Alu -19 294 3 2304 164 6 50 chr3 60644570 60644948 -166879630 - MER66B LTR ERV1 -105 381 27 478 276 165 4 chr3 60645855 60646083 -166878495 - MIR SINE MIR -2 260 2 2194 91 0 30 chr3 60646437 60646734 -166877844 - AluSx SINE Alu -24 288 1 291 252 15 61 chr3 60647155 60647286 -166877292 + MIR3 SINE MIR 63 187 -21 390 310 7 28 chr3 60647517 60647662 -166876916 + MIR SINE MIR 93 234 -28 2545 82 28 67 chr3 60648010 60648049 -166876529 - THE1C LTR MaLR 0 375 336 2179 111 0 0 chr3 60648049 60648346 -166876232 + AluSx SINE Alu 1 297 -15 2277 100 3 0 chr3 60648346 60648657 -166875921 + AluSx SINE Alu 1 312 0 2545 82 28 67 chr3 60648657 60649006 -166875572 - THE1C LTR MaLR -37 338 1 1873 136 3 17 chr3 60649448 60649749 -166874829 + AluJb SINE Alu 5 301 -11 190 229 257 29 chr3 60650230 60650370 -166874208 - MER5B DNA MER1_type -6 172 1 374 121 15 0 chr3 60650447 60650513 -166874065 + (TTCA)n Simple_repeat Simple_repeat 4 70 0 481 306 65 6 chr3 60650993 60651163 -166873415 - MIR SINE MIR -82 180 1 418 311 81 6 chr3 60651565 60651726 -166872852 - MIR SINE MIR -88 174 2 904 130 0 15 chr3 60652820 60652979 -166871599 - FLAM_C SINE Alu 0 161 5 209 83 28 0 chr3 60653547 60653583 -166870995 + (TA)n Simple_repeat Simple_repeat 2 38 0 1282 217 146 0 chr3 60654235 60654530 -166870048 + MER58B DNA MER1_type 1 338 -3 319 361 10 31 chr3 60654565 60654659 -166869919 + Charlie8 DNA MER1_type 2 96 -245 2039 75 32 21 chr3 60654659 60654972 -166869606 - AluSx SINE Alu 0 316 1 319 361 10 31 chr3 60654972 60655070 -166869508 + Charlie8 DNA MER1_type 96 191 -150 244 322 68 68 chr3 60655657 60655834 -166868744 + L2 LINE L2 3096 3272 0 567 271 154 0 chr3 60656451 60656665 -166867913 - MIR SINE MIR -14 248 2 282 29 0 0 chr3 60656810 60656845 -166867733 + (CAGCC)n Simple_repeat Simple_repeat 4 38 0 201 238 0 0 chr3 60657493 60657535 -166867043 + GA-rich Low_complexity Low_complexity 6 47 0 270 344 11 11 chr3 60657614 60657707 -166866871 - MIR SINE MIR -82 126 34 2373 93 0 3 chr3 60657886 60658196 -166866382 - AluSx SINE Alu -3 309 1 386 309 30 6 chr3 60658224 60658389 -166866189 - L1MC4a LINE L1 -1894 5914 5746 186 43 0 0 chr3 60659023 60659046 -166865532 + (CA)n Simple_repeat Simple_repeat 1 23 0 2367 93 3 0 chr3 60661397 60661709 -166862869 - AluSp SINE Alu 0 313 1 2263 60 0 11 chr3 60661733 60662052 -166862526 - AluY SINE Alu 0 316 1 237 316 200 19 chr3 60662202 60662357 -166862221 - MIR SINE MIR -19 243 61 891 183 37 83 chr3 60663401 60663534 -166861044 - MIR SINE MIR 0 262 143 2114 129 0 0 chr3 60663534 60663829 -166860749 + AluSx SINE Alu 1 295 -17 891 183 37 83 chr3 60663829 60663936 -166860642 - MIR SINE MIR -119 143 33 463 325 52 0 chr3 60664034 60664228 -166860350 + MER63A DNA MER1_type 7 210 0 514 261 50 94 chr3 60665982 60666229 -166858349 - MIR SINE MIR -18 244 21 336 127 0 0 chr3 60666248 60666303 -166858275 + (CA)n Simple_repeat Simple_repeat 1 55 0 476 339 22 59 chr3 60666778 60667100 -166857478 - L2 LINE L2 0 3272 2963 540 324 101 5 chr3 60667105 60667324 -166857254 + L2 LINE L2 3024 3263 -9 2180 105 26 0 chr3 60667866 60668170 -166856408 + AluSq SINE Alu 2 313 0 259 278 251 21 chr3 60668171 60668362 -166856216 + MER102b DNA MER1_type 106 340 -1 196 273 0 47 chr3 60668535 60668620 -166855958 - MIR SINE MIR -60 148 111 727 221 61 6 chr3 60668802 60668965 -166855613 + AluJo SINE Alu 123 294 -18 2262 96 0 3 chr3 60668978 60669279 -166855299 + AluSx SINE Alu 6 305 -7 356 284 84 23 chr3 60670491 60670684 -166853894 + MIR SINE MIR 3 204 -58 196 381 0 19 chr3 60671446 60671551 -166853027 + MIR SINE MIR 81 183 -79 193 241 52 17 chr3 60671839 60671897 -166852681 + MIR SINE MIR 21 80 -182 452 279 44 15 chr3 60671986 60672122 -166852456 - MIR SINE MIR -121 141 2 2059 129 10 0 chr3 60672323 60672632 -166851946 + AluSq SINE Alu 1 312 -1 239 281 16 0 chr3 60673067 60673131 -166851447 - MIR3 SINE MIR -30 178 114 249 263 164 47 chr3 60674266 60674479 -166850099 + L2 LINE L2 2848 3085 -187 258 143 0 0 chr3 60675135 60675184 -166849394 + (CA)n Simple_repeat Simple_repeat 1 49 0 183 273 91 0 chr3 60675741 60675807 -166848771 - MIR SINE MIR -131 131 60 192 316 163 0 chr3 60676384 60676482 -166848096 + MIR3 SINE MIR 95 208 0 366 278 98 13 chr3 60677275 60677509 -166847069 + L2 LINE L2 2821 3074 -198 343 258 65 40 chr3 60677485 60677609 -166846969 - MIR SINE MIR -118 144 18 * 209 303 15 0 chr3 60678267 60678333 -166846245 + MIR SINE MIR 35 101 -107 450 297 53 10 chr3 60678437 60678617 -166845961 - MIR SINE MIR -13 249 63 209 299 117 0 chr3 60681369 60681446 -166843132 + MIR SINE MIR 106 191 -71 2086 129 0 0 chr3 60681503 60681798 -166842780 - AluSg SINE Alu -13 297 3 223 255 0 0 chr3 60681853 60681900 -166842678 - MIR SINE MIR -106 156 110 296 319 71 21 chr3 60682505 60682646 -166841932 - MIR SINE MIR -110 152 5 197 136 0 23 chr3 60683003 60683047 -166841531 + (CA)n Simple_repeat Simple_repeat 1 43 0 220 179 0 0 chr3 60683196 60683235 -166841343 + (CA)n Simple_repeat Simple_repeat 2 40 0 234 0 0 0 chr3 60683381 60683407 -166841171 + (CA)n Simple_repeat Simple_repeat 2 27 0 262 252 7 52 chr3 60683457 60683612 -166840966 + (CA)n Simple_repeat Simple_repeat 2 149 0 224 98 0 24 chr3 60684212 60684253 -166840325 + (TGGGGG)n Simple_repeat Simple_repeat 2 41 0 28 48 0 0 chr3 60684703 60684745 -166839833 + GC_rich Low_complexity Low_complexity 1 42 0 29 28 0 0 chr3 60684797 60684833 -166839745 + GC_rich Low_complexity Low_complexity 1 36 0 16214 67 6 3 chr3 60734938 60737093 -166787485 - L1P LINE L1 -1039 5107 2947 410 279 50 36 chr3 60739090 60739230 -166785348 - MER5B DNA MER1_type -1 177 36 1637 93 18 0 chr3 60739378 60739603 -166784975 - L1PA10 LINE L1 -1 6167 5939 318 377 48 24 chr3 60741381 60741548 -166783030 - L2 LINE L2 0 3272 3102 1036 318 113 11 chr3 60741945 60742407 -166782171 + L2 LINE L2 820 1328 -1986 612 330 56 4 chr3 60742563 60742796 -166781782 - L2 LINE L2 -245 3068 2824 262 363 83 5 chr3 60743440 60743633 -166780945 - MIR SINE MIR -6 256 49 2178 87 21 0 chr3 60743826 60744115 -166780463 - AluSx SINE Alu -16 296 2 719 219 38 33 chr3 60745442 60745625 -166778953 - MER58A DNA MER1_type 0 224 41 7796 118 3 12 chr3 60745737 60745854 -166778724 - L1P3 LINE L1 -3825 2636 2519 2132 82 7 17 chr3 60745854 60746146 -166778432 - AluY SINE Alu -22 289 1 7796 118 3 12 chr3 60746146 60747328 -166777250 - L1P3 LINE L1 -3942 2519 1354 1715 157 0 0 chr3 60747434 60747696 -166776882 + AluSx SINE Alu 35 296 -16 279 269 37 37 chr3 60747855 60747963 -166776615 + MIR SINE MIR 32 139 -69 2233 101 7 0 chr3 60748025 60748321 -166776257 - AluSx SINE Alu -14 298 1 183 327 0 0 chr3 60748406 60748461 -166776117 + L2 LINE L2 2995 3049 -223 743 301 129 25 chr3 60748838 60749317 -166775261 - Tigger8 DNA MER2_type -97 569 41 751 174 8 8 chr3 60749752 60749873 -166774705 + AluJb SINE Alu 152 272 -40 180 0 0 0 chr3 60749873 60749893 -166774685 + (CACCC)n Simple_repeat Simple_repeat 2 21 0 538 238 33 7 chr3 60750609 60750760 -166773818 + LTR33 LTR ERVL 26 180 -341 2068 233 18 14 chr3 60750827 60751317 -166773261 - MER74A LTR ERVL -14 544 53 500 240 8 8 chr3 60752147 60752272 -166772306 + MER5A DNA MER1_type 9 133 -56 186 284 167 10 chr3 60752495 60752597 -166771981 + L2 LINE L2 3180 3297 -16 261 235 165 59 chr3 60753005 60753175 -166771403 - MIR SINE MIR -73 189 2 348 64 0 0 chr3 60754252 60754299 -166770279 + (CA)n Simple_repeat Simple_repeat 2 48 0 219 348 8 42 chr3 60754301 60754419 -166770159 - MIR3 SINE MIR -84 124 11 210 311 16 0 chr3 60755325 60755386 -166769192 + L2 LINE L2 3156 3217 -55 180 0 0 0 chr3 60756139 60756159 -166768419 + (T)n Simple_repeat Simple_repeat 1 20 0 1813 162 3 20 chr3 60757467 60757763 -166766815 - AluJb SINE Alu -21 291 1 24 32 0 0 chr3 60757867 60757898 -166766680 + AT_rich Low_complexity Low_complexity 1 31 0 338 242 21 21 chr3 60757932 60758027 -166766551 + HsTC2 DNA Tc2 7 101 -1797 523 266 109 70 chr3 60758033 60758180 -166766398 - L1MEd LINE L1 -5478 641 501 2009 187 23 0 chr3 60758180 60758533 -166766045 - MER46B DNA MER2_type 0 236 1 523 266 109 70 chr3 60758533 60758697 -166765881 - L1MEd LINE L1 -5618 501 318 2045 139 3 3 chr3 60758867 60759176 -166765402 + AluSx SINE Alu 1 309 -3 700 295 38 8 chr3 60759905 60760142 -166764436 - LTR33A LTR ERVL -17 506 263 486 211 28 56 chr3 60761729 60761871 -166762707 + MIR3 SINE MIR 60 197 -11 1909 71 38 127 chr3 60761991 60762331 -166762247 - L1MA2 LINE L1 -1 6303 5994 366 297 135 36 chr3 60762335 60762527 -166762051 - MIR SINE MIR -48 214 4 262 250 56 0 chr3 60763030 60763102 -166761476 - L3 LINE CR1 -105 1472 1397 1431 180 98 32 chr3 60763566 60763599 -166760979 - L1MD3 LINE L1 -186 7809 7780 1551 182 27 24 chr3 60763599 60763895 -166760683 - AluJb SINE Alu -15 297 1 1431 180 98 32 chr3 60763895 60764239 -166760339 - L1MD3 LINE L1 -215 7780 7407 284 167 0 19 chr3 60764239 60764293 -166760285 - MLT1F1 LTR MaLR -448 119 67 908 280 71 35 chr3 60764604 60765029 -166759549 + L2 LINE L2 2874 3313 0 21 0 0 0 chr3 60765306 60765327 -166759251 + AT_rich Low_complexity Low_complexity 1 21 0 601 294 63 38 chr3 60766094 60766488 -166758090 + L1ME4a LINE L1 5648 6051 -70 510 230 133 7 chr3 60766561 60766696 -166757882 - MER5A DNA MER1_type -37 152 1 183 192 0 77 chr3 60768343 60768395 -166756183 + L2 LINE L2 3173 3220 -93 698 279 5 50 chr3 60768769 60768988 -166755590 + MIR SINE MIR 15 223 -39 739 191 0 8 chr3 60768993 60769119 -166755459 - FLAM_C SINE Alu -17 126 2 285 326 74 15 chr3 60769799 60769934 -166754644 + MER117 DNA MER1_type 5 147 -50 252 208 13 52 chr3 60771967 60772044 -166752534 + MLT1L LTR MaLR 541 614 -1 29 84 0 0 chr3 60772416 60772487 -166752091 + AT_rich Low_complexity Low_complexity 1 71 0 1172 268 29 20 chr3 60772745 60773155 -166751423 - MLT1J LTR MaLR -54 457 1 764 158 9 9 chr3 60773535 60773649 -166750929 - AluSq/x SINE Alu -197 115 2 964 162 66 35 chr3 60773847 60774045 -166750533 + L1PB4 LINE L1 5953 6156 0 233 327 120 45 chr3 60774087 60774396 -166750182 + L3 LINE CR1 889 1220 -357 234 0 0 0 chr3 60774534 60774560 -166750018 + (TC)n Simple_repeat Simple_repeat 1 26 0 2320 72 24 3 chr3 60776252 60776544 -166748034 - AluY SINE Alu -13 298 1 307 324 55 51 chr3 60776567 60776860 -166747718 + L1M4 LINE L1 3215 3508 -2638 434 100 100 0 chr3 60777125 60777195 -166747383 + MADE1 DNA Mariner 1 77 -3 1717 188 60 0 chr3 60777477 60777796 -166746782 - MER7A DNA MER2_type -9 337 2 2324 104 0 0 chr3 60777970 60778269 -166746309 + AluSg SINE Alu 1 299 -11 25 0 0 0 chr3 60778287 60778312 -166746266 + AT_rich Low_complexity Low_complexity 1 25 0 777 233 90 49 chr3 60778586 60778874 -166745704 - AluJo SINE Alu -1 301 2 23 68 0 0 chr3 60779630 60779674 -166744904 + AT_rich Low_complexity Low_complexity 1 44 0 1688 157 42 0 chr3 60780318 60780605 -166743973 + AluSx SINE Alu 1 299 -13 1715 130 22 18 chr3 60780667 60780943 -166743635 + AluJb SINE Alu 5 281 -31 243 0 0 0 chr3 60780947 60780974 -166743604 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1682 217 39 25 chr3 60781201 60781356 -166743222 + MLT1A1 LTR MaLR 1 152 -213 2288 121 0 0 chr3 60781356 60781669 -166742909 + AluSq SINE Alu 1 313 0 1682 217 39 25 chr3 60781669 60781873 -166742705 + MLT1A1 LTR MaLR 152 365 0 27 29 0 0 chr3 60782162 60782196 -166742382 + AT_rich Low_complexity Low_complexity 1 34 0 2254 104 0 3 chr3 60782284 60782582 -166741996 + AluSc SINE Alu 1 297 -12 2335 106 3 0 chr3 60784589 60784900 -166739678 + AluSx SINE Alu 1 312 0 1106 163 0 6 chr3 60784945 60785111 -166739467 + FAM SINE Alu 2 166 -9 822 289 79 37 chr3 60785768 60786173 -166738405 - MLT1J2 LTR MaLR -28 422 1 2306 93 0 0 chr3 60787041 60787342 -166737236 + AluY SINE Alu 1 301 -10 302 311 19 10 chr3 60787345 60787448 -166737130 + GA-rich Low_complexity Low_complexity 2 105 0 316 296 60 81 chr3 60787700 60787942 -166736636 - L2 LINE L2 -38 3234 2908 1398 141 53 10 chr3 60787942 60788364 -166736214 + LTR54 LTR ERV1 1 507 -3 404 353 20 0 chr3 60788373 60788523 -166736055 - L2 LINE L2 -413 2901 2749 35 0 0 0 chr3 60788706 60788741 -166735837 + AT_rich Low_complexity Low_complexity 1 35 0 2502 82 3 0 chr3 60788746 60789052 -166735526 + AluSp SINE Alu 1 307 -6 748 191 0 0 chr3 60789055 60789170 -166735408 + FLAM_A SINE Alu 1 115 -18 2501 54 0 0 chr3 60789219 60789514 -166735064 + AluY SINE Alu 1 295 -16 1777 177 22 126 chr3 60789516 60790104 -166734474 + LTR8A LTR ERV1 1 545 -182 1615 174 10 17 chr3 60790220 60790514 -166734064 + AluJo SINE Alu 16 307 -5 316 314 134 6 chr3 60790529 60790701 -166733877 - L1MDa LINE L1 -3913 2627 2434 258 295 19 19 chr3 60791136 60791241 -166733337 - L1M2 LINE L1 -4378 2471 2367 186 71 0 0 chr3 60791302 60791330 -166733248 + (TG)n Simple_repeat Simple_repeat 1 28 0 2347 99 0 3 chr3 60791354 60791666 -166732912 - AluSx SINE Alu -1 311 1 703 305 90 9 chr3 60791680 60792014 -166732564 - L1MDa LINE L1 -4864 1666 1306 1702 137 101 4 chr3 60792045 60792323 -166732255 - AluJb SINE Alu -6 306 2 2236 109 0 7 chr3 60792327 60792630 -166731948 - AluSq SINE Alu -12 301 1 914 199 0 0 chr3 60793794 60793955 -166730623 + FRAM SINE Alu 7 167 -9 2448 87 0 0 chr3 60794172 60794484 -166730094 - AluSx SINE Alu 0 312 1 1651 178 0 23 chr3 60794484 60794786 -166729792 - AluJo SINE Alu -16 296 1 31417 29 17 2 chr3 60795065 60801095 -166723483 - L1PA2 LINE L1 0 6155 1 216 67 0 0 chr3 60802025 60802055 -166722523 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2252 103 7 0 chr3 60802104 60802406 -166722172 + AluSc SINE Alu 1 304 -5 2069 143 0 0 chr3 60802980 60803273 -166721305 - AluSq SINE Alu -20 293 1 2080 117 0 0 chr3 60803834 60804117 -166720461 - AluSx SINE Alu -19 293 11 822 158 98 37 chr3 60804371 60804535 -166720043 + AluJo SINE Alu 113 286 -26 286 161 39 13 chr3 60804535 60804547 -166720031 + (TA)n Simple_repeat Simple_repeat 2 12 -148 2075 130 3 7 chr3 60804547 60804855 -166719723 + AluSx SINE Alu 1 307 -5 286 161 39 13 chr3 60804855 60804997 -166719581 + (TA)n Simple_repeat Simple_repeat 12 160 0 200 238 159 0 chr3 60805350 60805413 -166719165 + L2 LINE L2 1588 1660 -1654 2032 115 10 7 chr3 60805838 60806133 -166718445 - AluSx SINE Alu -16 296 1 1392 246 137 10 chr3 60806150 60806662 -166717916 + L2 LINE L2 2126 2702 -612 798 163 8 0 chr3 60806706 60806829 -166717749 - FLAM_C SINE Alu -12 131 8 240 128 0 0 chr3 60806829 60806868 -166717710 - L1PA14 LINE L1 -8 6153 6115 1934 104 25 4 chr3 60806869 60807149 -166717429 - AluY SINE Alu -2 309 24 1829 227 0 80 chr3 60807149 60807624 -166716954 - L1PA7 LINE L1 -197 5957 5521 1096 253 55 83 chr3 60807627 60808289 -166716289 + L2 LINE L2 2687 3313 0 183 239 0 0 chr3 60808846 60808892 -166715686 + CT-rich Low_complexity Low_complexity 3 48 0 390 307 50 0 chr3 60808895 60808996 -166715582 - MIR SINE MIR -77 131 26 2131 122 0 29 chr3 60809155 60809467 -166715111 + AluJb SINE Alu 1 303 -9 4571 156 38 54 chr3 60809801 60809977 -166714601 + L1MB7 LINE L1 5023 5200 -984 1742 139 43 46 chr3 60809977 60810279 -166714299 + AluJb SINE Alu 3 303 -9 4571 156 38 54 chr3 60810279 60811292 -166713286 + L1MB7 LINE L1 5200 6183 -1 1959 141 0 17 chr3 60811349 60811646 -166712932 - AluJo SINE Alu -20 292 1 867 206 60 44 chr3 60811872 60812120 -166712458 + L1ME3A LINE L1 5914 6165 -5 927 256 94 32 chr3 60812579 60812838 -166711740 - MER46C DNA MER2_type 0 338 56 1899 162 21 0 chr3 60812838 60813122 -166711456 + AluJb SINE Alu 1 290 -22 927 256 94 32 chr3 60813122 60813170 -166711408 - MER46C DNA MER2_type -282 56 12 2308 103 0 0 chr3 60813978 60814279 -166710299 - AluSx SINE Alu -11 301 1 2462 121 129 5 chr3 60814482 60814862 -166709716 - MSTA LTR MaLR 0 428 2 2071 136 3 0 chr3 60815044 60815338 -166709240 - AluSx SINE Alu -16 296 2 615 176 90 101 chr3 60815381 60815569 -166709009 - L1ME2 LINE L1 -2 6162 5977 188 235 47 24 chr3 60815603 60815688 -166708890 - L2 LINE L2 -290 2982 2896 1332 142 18 9 chr3 60815962 60816187 -166708391 - AluSq SINE Alu -85 228 2 615 176 90 101 chr3 60816230 60816418 -166708160 - L1ME2 LINE L1 -2 6162 5977 188 235 47 24 chr3 60816452 60816537 -166708041 - L2 LINE L2 -290 2982 2896 21 0 0 0 chr3 60816734 60816755 -166707823 + AT_rich Low_complexity Low_complexity 1 21 0 906 189 0 7 chr3 60816755 60816908 -166707670 - FRAM SINE Alu -25 151 1 298 279 88 126 chr3 60818049 60818237 -166706341 + HAL1b LINE L1 47 241 -1107 2007 121 3 60 chr3 60818237 60818568 -166706010 + AluJb SINE Alu 1 312 0 298 279 88 126 chr3 60818568 60819187 -166705391 + HAL1b LINE L1 241 823 -525 807 233 5 32 chr3 60819368 60819557 -166705021 + L1MC5 LINE L1 6668 6851 -1110 828 157 8 0 chr3 60819578 60819699 -166704879 - FLAM_C SINE Alu -20 123 2 21 43 0 22 chr3 60819795 60819827 -166704751 + AT_rich Low_complexity Low_complexity 1 33 -12 2159 126 7 0 chr3 60819827 60820136 -166704442 - AluSq SINE Alu -2 311 1 21 43 0 22 chr3 60820136 60820149 -166704429 + AT_rich Low_complexity Low_complexity 33 45 0 1373 120 88 113 chr3 60820149 60820423 -166704155 - AluSx SINE Alu -45 267 1 39045 84 11 7 chr3 60820460 60826585 -166697993 + L1PA6 LINE L1 11 6151 -3 471 301 55 40 chr3 60826759 60827105 -166697473 + L1ME4a LINE L1 5704 6054 -67 7679 50 4 0 chr3 60827676 60828688 -166695890 - L1PA5 LINE L1 -1 6153 5141 891 18 0 0 chr3 60828688 60828797 -166695781 + L1PA5 LINE L1 5024 5132 -1014 * 1149 234 72 63 chr3 60828796 60829227 -166695351 + L1MC5 LINE L1 7051 7485 -476 249 256 23 23 chr3 60829336 60829422 -166695156 + L1ME3A LINE L1 5987 6072 -98 204 135 0 0 chr3 60829494 60829531 -166695047 + (TCCA)n Simple_repeat Simple_repeat 3 39 0 212 0 36 0 chr3 60829631 60829659 -166694919 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1795 149 8 0 chr3 60829659 60829927 -166694651 - AluJo SINE Alu -32 280 11 473 194 43 36 chr3 60829948 60830077 -166694501 - L1ME2 LINE L1 -10 6154 6022 2275 111 0 3 chr3 60830077 60830375 -166694203 - AluSc SINE Alu -12 297 1 402 100 0 0 chr3 60830490 60830550 -166694028 + (TC)n Simple_repeat Simple_repeat 1 60 0 1841 143 11 11 chr3 60830550 60830837 -166693741 - AluJo SINE Alu -20 292 6 1003 209 71 43 chr3 60830916 60831170 -166693408 + MIR SINE MIR 2 262 0 205 299 45 15 chr3 60831392 60831459 -166693119 + MIR SINE MIR 82 150 -58 716 139 0 0 chr3 60832299 60832400 -166692178 - AluJ/FLAM SINE Alu -211 101 1 1104 238 32 32 chr3 60832488 60832799 -166691779 + L1MDa LINE L1 34 344 -6196 4610 188 104 73 chr3 60833072 60833701 -166690877 + L1MDa LINE L1 836 1444 -5096 2127 97 14 0 chr3 60833701 60833979 -166690599 + AluSx SINE Alu 1 282 -30 186 43 0 0 chr3 60833982 60834005 -166690573 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4610 188 104 73 chr3 60834005 60834293 -166690285 + L1MDa LINE L1 1445 1723 -4817 1609 62 5 0 chr3 60834293 60834486 -166690092 - L1PA8 LINE L1 -6 6166 5973 4610 188 104 73 chr3 60834486 60834719 -166689859 + L1MDa LINE L1 1723 1947 -4593 533 16 0 0 chr3 60834719 60834781 -166689797 + L1PA6 LINE L1 6092 6153 -1 4610 188 104 73 chr3 60834781 60835176 -166689402 + L1MDa LINE L1 1947 2328 -4212 1824 166 29 23 chr3 60835176 60835484 -166689094 + AluJo SINE Alu 1 310 -2 4610 188 104 73 chr3 60835484 60835966 -166688612 + L1MDa LINE L1 2328 2899 -3641 3142 154 44 47 chr3 60835964 60836238 -166688340 + L1MB3 LINE L1 4912 5185 -998 * 687 227 31 0 chr3 60836238 60836366 -166688212 + FLAM_A SINE Alu 1 132 -1 3142 154 44 47 chr3 60836366 60836990 -166687588 + L1MB3 LINE L1 5185 5920 -263 1870 137 49 14 chr3 60836990 60837274 -166687304 - AluJb SINE Alu -18 294 1 3142 154 44 47 chr3 60837274 60837538 -166687040 + L1MB3 LINE L1 5920 6183 0 2373 100 0 0 chr3 60838322 60838622 -166685956 - AluSx SINE Alu -12 300 1 243 285 106 33 chr3 60839094 60839245 -166685333 - MIR SINE MIR -56 206 45 1843 155 6 31 chr3 60839769 60840086 -166684492 + AluJo SINE Alu 1 309 -3 614 211 51 127 chr3 60840601 60840766 -166683812 - L1ME3A LINE L1 -219 6449 6273 2035 97 61 0 chr3 60840766 60841044 -166683534 - AluSp SINE Alu -18 295 1 614 211 51 127 chr3 60841044 60841099 -166683479 - L1ME3A LINE L1 -395 6273 6215 1982 149 0 3 chr3 60841099 60841394 -166683184 - AluJo SINE Alu -18 294 1 614 211 51 127 chr3 60841394 60841503 -166683075 - L1ME3A LINE L1 -453 6215 6144 1104 247 101 55 chr3 60841522 60841845 -166682733 + LTR33A LTR ERVL 7 362 -161 819 198 231 6 chr3 60841845 60842027 -166682551 - MER58A DNA MER1_type -1 223 1 1104 247 101 55 chr3 60842027 60842197 -166682381 + LTR33A LTR ERVL 362 523 0 597 302 42 45 chr3 60842201 60842449 -166682129 - L1ME3A LINE L1 -516 6144 5896 1516 176 52 21 chr3 60842449 60842739 -166681839 + AluJb SINE Alu 1 299 -13 597 302 42 45 chr3 60842739 60842801 -166681777 - L1ME3A LINE L1 -764 5896 5835 1928 238 44 79 chr3 60842907 60843905 -166680673 - L1ME LINE L1 -4154 2490 1444 204 158 0 26 chr3 60843905 60843943 -166680635 + CT-rich Low_complexity Low_complexity 2 38 0 507 242 83 58 chr3 60843983 60844157 -166680421 - L1ME LINE L1 -5056 1578 1391 1759 179 7 7 chr3 60844157 60844465 -166680113 + AluJo SINE Alu 2 309 -3 507 242 83 58 chr3 60844465 60844617 -166679961 - L1ME LINE L1 -5243 1391 1244 783 221 72 152 chr3 60844901 60845058 -166679520 - L1M4 LINE L1 -843 5303 5135 1476 207 14 14 chr3 60845058 60845353 -166679225 - AluJo SINE Alu -17 295 1 783 221 72 152 chr3 60845353 60845679 -166678899 - L1M4 LINE L1 -1011 5135 4785 2023 158 0 0 chr3 60845679 60845990 -166678588 - AluJb SINE Alu 0 312 2 783 221 72 152 chr3 60845990 60846201 -166678377 - L1M4 LINE L1 -1361 4785 4559 218 29 59 0 chr3 60846201 60846235 -166678343 + (TTTTA)n Simple_repeat Simple_repeat 2 37 0 2105 108 4 0 chr3 60846239 60846518 -166678060 - AluSx SINE Alu -32 280 1 783 221 72 152 chr3 60846518 60846555 -166678023 - L1M4 LINE L1 -1484 4662 4624 2411 85 0 7 chr3 60847775 60848082 -166676496 + AluSx SINE Alu 3 307 -5 475 342 13 0 chr3 60848403 60848558 -166676020 - HERV16 LTR ERVL -800 4964 4808 478 297 113 22 chr3 60848627 60848812 -166675766 - HERV16 LTR ERVL -1418 4346 4145 4267 292 74 27 chr3 60849092 60849553 -166675025 - HERV16 LTR ERVL -1548 3556 3118 1558 184 71 0 chr3 60849553 60849854 -166674724 - AluJb SINE Alu 0 321 2 4267 292 74 27 chr3 60849854 60851298 -166673280 - HERV16 LTR ERVL -1986 3118 1735 316 273 13 0 chr3 60851436 60851513 -166673065 - LTR16A LTR ERVL -227 223 146 269 268 36 27 chr3 60851513 60851625 -166672953 - HERV16 LTR ERVL -3276 1720 1608 816 164 0 0 chr3 60851651 60851773 -166672805 - FRAM SINE Alu -1 175 54 3666 261 83 67 chr3 60851784 60853288 -166671290 - HERV16 LTR ERVL -3455 1541 13 1457 249 74 13 chr3 60853305 60853682 -166670896 - LTR16A LTR ERVL -35 415 16 230 271 68 0 chr3 60853904 60853963 -166670615 + MIR SINE MIR 87 149 -59 34 0 0 0 chr3 60854042 60854076 -166670502 + AT_rich Low_complexity Low_complexity 1 34 0 1066 234 117 8 chr3 60854874 60855222 -166669356 - LTR16B LTR ERVL -9 455 2 473 240 29 29 chr3 60855343 60855514 -166669064 - MERVL LTR ERVL -154 5331 5161 2391 284 63 92 chr3 60855594 60855649 -166668929 - ERVL LTR ERVL -1386 3881 3826 2553 43 0 7 chr3 60855649 60855948 -166668630 - AluY SINE Alu -14 297 1 2391 284 63 92 chr3 60855948 60857011 -166667567 - ERVL LTR ERVL -1441 3826 2827 1687 291 77 64 chr3 60857073 60857925 -166666653 - ERVL LTR ERVL -2436 2560 1720 234 0 0 0 chr3 60857925 60857951 -166666627 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 1687 291 77 64 chr3 60857951 60857981 -166666597 - ERVL LTR ERVL -3276 1720 1692 210 71 0 0 chr3 60857981 60858009 -166666569 + (TG)n Simple_repeat Simple_repeat 2 29 0 1687 291 77 64 chr3 60858009 60858089 -166666489 - ERVL LTR ERVL -3304 1692 1585 466 191 24 0 chr3 60858162 60858246 -166666332 - ERVL LTR ERVL -3617 1379 1294 904 279 39 0 chr3 60858246 60858475 -166666103 - LTR16B LTR ERVL -226 238 1 3389 155 23 23 chr3 60858650 60858928 -166665650 - L1MB7 LINE L1 -19 6165 5888 2133 130 0 3 chr3 60858928 60859227 -166665351 - AluSx SINE Alu -8 304 7 3389 155 23 23 chr3 60859227 60859548 -166665030 - L1MB7 LINE L1 -295 5889 5566 547 216 0 0 chr3 60859561 60859658 -166664920 - FLAM_C SINE Alu -2 141 45 556 206 65 38 chr3 60861791 60861975 -166662603 - L2 LINE L2 -1 3312 3124 245 254 32 0 chr3 60862425 60862488 -166662090 - MIR3 SINE MIR -31 177 113 237 125 0 25 chr3 60862537 60862577 -166662001 - Alu SINE Alu -65 237 199 213 167 24 0 chr3 60862864 60862906 -166661672 + L2 LINE L2 3224 3266 -6 1925 137 3 10 chr3 60863406 60863693 -166660885 + AluJb SINE Alu 1 286 -21 279 0 0 0 chr3 60863693 60863724 -166660854 + (GA)n Simple_repeat Simple_repeat 2 32 0 199 267 47 58 chr3 60864132 60864218 -166660360 - L2 LINE L2 0 3313 3229 2023 154 7 0 chr3 60864273 60864578 -166660000 - AluSq SINE Alu -6 307 1 650 109 11 0 chr3 60864589 60864681 -166659897 - L1PB2 LINE L1 -3 6148 6056 567 267 55 76 chr3 60864834 60865070 -166659508 + L2 LINE L2 2992 3222 -50 2240 120 7 0 chr3 60866139 60866440 -166658138 + AluSx SINE Alu 1 303 -9 1044 150 0 0 chr3 60866496 60866649 -166657929 - FRAM SINE Alu -13 163 11 185 237 26 0 chr3 60866824 60866862 -166657716 + MIR3 SINE MIR 118 156 -52 2260 220 69 68 chr3 60866866 60867647 -166656931 - MER20B DNA MER1_type 0 784 3 897 188 11 11 chr3 60867684 60867870 -166656708 - MER69 DNA AcHobo 0 2526 2341 1695 103 31 0 chr3 60867879 60868102 -166656476 + MER30 DNA MER1_type 1 230 0 2288 59 0 0 chr3 60868129 60868400 -166656178 + AluY SINE Alu 39 309 -2 2109 147 3 10 chr3 60868412 60868726 -166655852 + AluJb SINE Alu 1 312 0 1178 212 69 80 chr3 60868750 60868983 -166655595 - MER69 DNA AcHobo -872 354 125 267 54 0 0 chr3 60868983 60869020 -166655558 + (TG)n Simple_repeat Simple_repeat 2 38 0 1178 212 69 80 chr3 60869020 60869135 -166655443 - MER69 DNA AcHobo -1101 125 10 31 0 0 0 chr3 60869495 60869526 -166655052 + AT_rich Low_complexity Low_complexity 1 31 0 2158 235 96 74 chr3 60869598 60870067 -166654511 - HAL1 LINE L1 -577 1930 1473 1862 159 7 7 chr3 60870067 60870363 -166654215 - AluSx SINE Alu -16 296 1 2158 235 96 74 chr3 60870363 60870825 -166653753 - HAL1 LINE L1 -1034 1473 979 2196 104 21 0 chr3 60870825 60871114 -166653464 - AluSx SINE Alu -17 295 1 387 0 0 0 chr3 60871129 60871172 -166653406 + (TTA)n Simple_repeat Simple_repeat 3 45 0 12915 53 3 2 chr3 60871172 60873472 -166651106 - L1PA5 LINE L1 -18 6136 3832 1298 122 5 20 chr3 60873572 60873769 -166650809 + AluSg/x SINE Alu 98 291 -19 778 177 16 0 chr3 60873774 60873898 -166650680 + FLAM_A SINE Alu 4 129 -4 1526 125 13 5 chr3 60874018 60874242 -166650336 - MER4E LTR ERV1 0 779 554 725 138 0 0 chr3 60874274 60874383 -166650195 - FLAM_C SINE Alu 0 143 35 245 313 81 0 chr3 60874550 60874649 -166649929 - LTR43 LTR ERV1 -243 359 253 289 125 0 0 chr3 60874917 60874957 -166649621 - FLAM_C SINE Alu -92 40 1 243 285 49 73 chr3 60875201 60875324 -166649254 - L2 LINE L2 -182 3090 2971 299 288 51 40 chr3 60875351 60875502 -166649076 - MIR SINE MIR -61 147 16 2277 82 7 0 chr3 60875820 60876131 -166648447 + AluY SINE Alu 1 313 0 353 274 68 51 chr3 60876307 60876424 -166648154 + L2 LINE L2 3151 3269 -3 445 94 0 153 chr3 60876544 60876629 -166647949 - LTR8A LTR ERV1 0 727 656 2250 105 0 0 chr3 60876630 60876916 -166647662 - AluSg SINE Alu -13 297 12 777 261 67 98 chr3 60876961 60877367 -166647211 - L1MEd LINE L1 -5295 824 432 1983 110 7 7 chr3 60877367 60877696 -166646882 - AluSx SINE Alu 0 329 1 21 0 0 0 chr3 60877706 60877727 -166646851 + AT_rich Low_complexity Low_complexity 1 21 0 464 224 184 39 chr3 60878325 60878504 -166646074 - MER3 DNA MER1_type -3 206 2 350 315 7 27 chr3 60878540 60878686 -166645892 + MIR SINE MIR 5 147 -115 734 173 71 16 chr3 60878836 60878951 -166645627 + AluJo SINE Alu 2 126 -186 195 42 0 0 chr3 60878951 60878975 -166645603 + (CCA)n Simple_repeat Simple_repeat 2 25 0 734 173 71 16 chr3 60878975 60878986 -166645592 + AluJo SINE Alu 126 135 -177 2581 60 0 0 chr3 60879105 60879407 -166645171 + AluY SINE Alu 1 302 -9 1733 158 3 17 chr3 60880453 60880751 -166643827 - AluJb SINE Alu -18 294 1 2287 85 3 3 chr3 60881698 60881992 -166642586 + AluY SINE Alu 1 294 -17 1797 99 118 15 chr3 60882229 60882501 -166642077 - AluSx SINE Alu -12 300 1 672 271 173 11 chr3 60883150 60883611 -166640967 + L2 LINE L2 2702 3252 -61 284 320 55 62 chr3 60883883 60884011 -166640567 - MIR SINE MIR -66 142 16 2471 71 0 0 chr3 60884350 60884647 -166639931 - AluY SINE Alu -14 297 1 912 126 0 21 chr3 60888784 60888927 -166635651 - LTR23 LTR ERV1 0 437 298 2350 83 0 0 chr3 60888928 60889229 -166635349 - AluSq SINE Alu -12 301 1 1244 94 11 6 chr3 60889230 60889410 -166635168 - AluSq SINE Alu -12 301 121 989 104 0 15 chr3 60889411 60889546 -166635032 - AluSg/x SINE Alu -16 296 164 1370 249 33 15 chr3 60889647 60889976 -166634602 - MLT2F LTR ERVL -328 335 1 2180 104 9 31 chr3 60890330 60890648 -166633930 - AluSx SINE Alu -1 311 1 260 0 0 54 chr3 60891068 60891105 -166633473 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1813 137 3 70 chr3 60891295 60891624 -166632954 - AluSx SINE Alu -5 307 1 494 332 23 9 chr3 60891660 60891874 -166632704 + LTR50 LTR ERVL 389 605 -190 316 276 97 32 chr3 60891847 60892032 -166632546 + LTR33A LTR ERVL 327 523 0 * 4141 189 14 43 chr3 60892145 60893073 -166631505 - L1 LINE L1 -1487 4659 3759 1941 136 10 10 chr3 60893073 60893368 -166631210 - AluSx SINE Alu -17 295 1 4141 189 14 43 chr3 60893368 60893410 -166631168 - L1 LINE L1 -2387 3759 3717 3979 242 62 26 chr3 60893515 60894145 -166630433 + L1PA15 LINE L1 3689 4295 -1870 2287 98 3 0 chr3 60894145 60894440 -166630138 + AluSp SINE Alu 1 296 -17 3979 242 62 26 chr3 60894440 60895927 -166628651 + L1PA15 LINE L1 4295 5887 -278 8045 79 3 1 chr3 60896027 60897090 -166627488 + L1P LINE L1 3331 4395 -1751 7582 101 9 3 chr3 60897191 60898292 -166626286 + L1P LINE L1 2279 3386 -2760 2154 238 58 86 chr3 60898481 60899924 -166624654 + L1MC5 LINE L1 6508 7910 -51 872 122 0 101 chr3 60900225 60900373 -166624205 + FLAM_C SINE Alu 1 133 0 3168 128 99 10 chr3 60901937 60902421 -166622157 + MER1A DNA MER1_type 1 527 0 2224 128 0 3 chr3 60902994 60903307 -166621271 + AluSx SINE Alu 1 312 0 2409 92 10 0 chr3 60903327 60903633 -166620945 + AluSq SINE Alu 1 309 -4 1874 226 27 7 chr3 60903900 60904338 -166620240 + L1MB8 LINE L1 5721 6167 -11 2268 75 41 3 chr3 60904338 60904633 -166619945 - AluY SINE Alu -5 306 1 2193 112 13 10 chr3 60904633 60904937 -166619641 - AluSx SINE Alu -7 305 1 1075 80 0 7 chr3 60904939 60905077 -166619501 - AluSg1 SINE Alu -172 137 1 757 238 188 59 chr3 60906307 60906711 -166617867 - L2 LINE L2 0 3313 2858 1992 150 0 16 chr3 60906735 60907041 -166617537 + AluSx SINE Alu 1 301 -11 284 102 20 0 chr3 60907576 60907625 -166616953 + (TC)n Simple_repeat Simple_repeat 1 50 0 4703 152 23 4 chr3 60907783 60908518 -166616060 - L1PA16 LINE L1 -2 6164 5416 260 303 0 0 chr3 60908887 60908953 -166615625 + (CA)n Simple_repeat Simple_repeat 1 66 0 2462 132 71 0 chr3 60910054 60910447 -166614131 + L1PA16 LINE L1 5741 6161 -5 282 215 62 108 chr3 60910447 60910566 -166614012 + L1ME2 LINE L1 5964 6078 -86 418 216 11 11 chr3 60910566 60910654 -166613924 + MLT1E2 LTR MaLR 1 88 -538 453 261 197 18 chr3 60910878 60911096 -166613482 + MIR SINE MIR 5 261 -1 189 0 0 0 chr3 60911149 60911170 -166613408 + (A)n Simple_repeat Simple_repeat 1 21 0 27 0 0 0 chr3 60911514 60911541 -166613037 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr3 60911594 60911618 -166612960 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr3 60911648 60911686 -166612892 + AT_rich Low_complexity Low_complexity 1 38 0 2143 129 21 6 chr3 60912149 60912475 -166612103 + L1PA13 LINE L1 5833 6163 0 240 310 0 0 chr3 60912481 60912552 -166612026 + L1ME3 LINE L1 6092 6162 0 402 224 73 0 chr3 60914050 60914185 -166610393 + MER58B DNA MER1_type 172 324 -17 244 265 18 0 chr3 60914412 60914484 -166610094 + HsTC2 DNA Tc2 1 74 -1824 2240 125 0 0 chr3 60914921 60915216 -166609362 + AluSx SINE Alu 1 295 -17 1508 168 3 67 chr3 60915358 60915673 -166608905 - AluJb SINE Alu -4 308 14 7172 27 6 1 chr3 60915936 60917217 -166607361 - L1PA3 LINE L1 -55 6100 4812 293 200 0 31 chr3 60917722 60917787 -166606791 + MIR3 SINE MIR 114 176 -32 450 254 26 52 chr3 60918978 60919171 -166605407 + L2 LINE L2 3118 3305 -8 243 0 0 0 chr3 60919676 60919703 -166604875 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 368 211 48 0 chr3 60919818 60919922 -166604656 - L1ME2 LINE L1 -9 6155 6047 938 201 63 5 chr3 60919928 60920117 -166604461 - MER20 DNA MER1_type -19 200 1 352 239 0 22 chr3 60920117 60920209 -166604369 - L1ME2 LINE L1 -131 6033 5944 752 235 75 11 chr3 60920968 60921155 -166603423 - MER3 DNA MER1_type -8 201 3 710 129 0 0 chr3 60921239 60921340 -166603238 + AluSg/x SINE Alu 205 305 -4 23 0 0 0 chr3 60921364 60921387 -166603191 + AT_rich Low_complexity Low_complexity 1 23 0 1807 135 0 21 chr3 60921387 60921669 -166602909 + AluSq SINE Alu 1 276 -37 264 59 0 0 chr3 60921669 60921703 -166602875 + (GGGGA)n Simple_repeat Simple_repeat 1 34 0 6219 205 35 12 chr3 60921874 60923116 -166601462 - L1PA15-16 LINE L1 -4911 1938 709 2244 106 3 0 chr3 60923361 60923654 -166600924 + AluSq SINE Alu 1 294 -19 712 185 29 101 chr3 60923656 60923704 -166600874 - L1ME2 LINE L1 0 6164 6114 818 113 16 24 chr3 60923704 60923828 -166600750 + FLAM_C SINE Alu 1 123 -10 712 185 29 101 chr3 60923828 60924017 -166600561 - L1ME2 LINE L1 -50 6114 5944 537 185 11 0 chr3 60924437 60924529 -166600049 - AluY SINE Alu -217 94 2 832 138 0 31 chr3 60924533 60924692 -166599886 - L1 LINE L1 -1663 4483 4330 648 193 50 36 chr3 60924696 60924836 -166599742 + FLAM_C SINE Alu 2 143 0 3978 156 27 7 chr3 60924855 60925567 -166599011 - L1 LINE L1 -1815 4331 3606 1109 151 73 46 chr3 60925568 60925786 -166598792 - AluJb SINE Alu -15 297 74 276 183 113 14 chr3 60925916 60925987 -166598591 + AluJ/FRAM SINE Alu 225 302 0 1293 214 57 104 chr3 60926045 60926110 -166598468 - L1MC4 LINE L1 -89 7953 7887 690 89 33 0 chr3 60926110 60926200 -166598378 - HY4 scRNA scRNA 0 93 1 1293 214 57 104 chr3 60926200 60926559 -166598019 - L1MC4 LINE L1 -155 7887 7559 1451 193 15 8 chr3 60926559 60926824 -166597754 + AluSq SINE Alu 31 297 -16 1293 214 57 104 chr3 60926824 60926958 -166597620 - L1MC4 LINE L1 -483 7559 7420 292 256 0 39 chr3 60927437 60927515 -166597063 + MER116 DNA Mariner 6 80 0 210 326 11 45 chr3 60927731 60927820 -166596758 + MIR SINE MIR 59 144 -118 351 247 14 0 chr3 60929334 60929407 -166595171 + MIR SINE MIR 6 79 -183 401 234 0 0 chr3 60929728 60929805 -166594773 - MER45B DNA AcHobo 0 1040 964 695 207 0 0 chr3 60929805 60929921 -166594657 - MER45B DNA AcHobo -437 603 488 1730 158 21 3 chr3 60929927 60930212 -166594366 + AluSx SINE Alu 1 290 -22 555 333 21 13 chr3 60931744 60931978 -166592600 + MIR SINE MIR 15 250 -12 369 65 48 0 chr3 60934093 60934155 -166590423 + L1MA2 LINE L1 6239 6303 -1 224 350 12 0 chr3 60934212 60934292 -166590286 + MIR SINE MIR 69 149 -113 279 222 40 30 chr3 60934376 60934475 -166590103 + L1ME3A LINE L1 5556 5655 -466 225 224 30 15 chr3 60934578 60934645 -166589933 + L1ME3A LINE L1 5853 5920 -201 1784 132 28 28 chr3 60934731 60935019 -166589559 + AluJo SINE Alu 1 288 -24 26 0 0 0 chr3 60935086 60935112 -166589466 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 60936067 60936088 -166588490 + AT_rich Low_complexity Low_complexity 1 21 0 256 221 33 33 chr3 60936670 60936761 -166587817 - MIR SINE MIR -63 145 101 432 273 27 44 chr3 60936844 60937027 -166587551 - MIR SINE MIR -12 250 71 2782 83 0 0 chr3 60938043 60938394 -166586184 - L1PA14 LINE L1 0 6161 5811 412 312 7 28 chr3 60938745 60938886 -166585692 - MIR3 SINE MIR -61 147 10 608 228 134 31 chr3 60939424 60939652 -166584926 + L1ME3A LINE L1 5912 6159 -7 298 302 22 77 chr3 60940081 60940263 -166584315 + L2 LINE L2 2889 3060 -212 211 116 116 0 chr3 60941991 60942034 -166582544 - MIR SINE MIR -111 151 104 617 192 92 15 chr3 60942257 60942387 -166582191 - FLAM_C SINE Alu -2 141 2 300 340 28 7 chr3 60943276 60943417 -166581161 - L1MC4a LINE L1 -1888 5920 5777 2245 100 7 3 chr3 60943653 60943954 -166580624 - AluSp SINE Alu -11 302 1 209 267 0 0 chr3 60944716 60944761 -166579817 + (CA)n Simple_repeat Simple_repeat 2 46 0 641 265 27 27 chr3 60944850 60945073 -166579505 - MER58A DNA MER1_type -1 223 1 235 68 68 0 chr3 60945172 60945216 -166579362 - Alu SINE Alu -3 300 254 863 186 49 85 chr3 60945836 60946142 -166578436 + L1MC4 LINE L1 6994 7288 -754 1211 136 62 11 chr3 60946723 60946995 -166577583 - L1 LINE L1 -2808 3338 3053 252 284 68 0 chr3 60947178 60947252 -166577326 - L2 LINE L2 -186 3086 3008 3343 104 41 6 chr3 60949018 60949527 -166575051 + L1PA14 LINE L1 5633 6159 -2 26 0 0 0 chr3 60949527 60949553 -166575025 + AT_rich Low_complexity Low_complexity 1 26 0 556 241 47 26 chr3 60949553 60949744 -166574834 + Charlie7 DNA MER1_type 2129 2323 -289 225 271 80 33 chr3 60949915 60950066 -166574512 - Charlie7 DNA MER1_type -1 2611 2454 446 275 182 0 chr3 60950071 60950307 -166574271 + L1MC4 LINE L1 7525 7803 -239 346 302 62 10 chr3 60950695 60950887 -166573691 - L1P LINE L1 -1089 5057 4856 1267 178 92 61 chr3 60951011 60951304 -166573274 - AluJo SINE Alu -10 302 1 1759 182 55 5 chr3 60951304 60951689 -166572889 - L1MB3 LINE L1 -42 6141 5738 376 298 120 14 chr3 60951695 60951903 -166572675 - L1MB3 LINE L1 -789 5357 5128 1390 171 58 16 chr3 60952024 60952281 -166572297 + AluJb SINE Alu 28 295 -17 626 305 70 52 chr3 60952281 60952665 -166571913 - L2 LINE L2 -1470 1844 1454 764 258 11 0 chr3 60952827 60953009 -166571569 + AluJo SINE Alu 1 184 -128 237 375 7 7 chr3 60953384 60953536 -166571042 - MLT1I LTR MaLR -159 250 99 283 200 12 12 chr3 60954761 60954841 -166569737 + CT-rich Low_complexity Low_complexity 3 82 0 3389 183 15 9 chr3 60954979 60955664 -166568914 - L1MB5 LINE L1 -1 6173 5485 223 263 195 58 chr3 60956305 60956495 -166568083 - MIR SINE MIR -10 252 37 1705 78 0 0 chr3 60956762 60956966 -166567612 + AluSx SINE Alu 1 204 -108 1661 146 47 30 chr3 60957068 60957430 -166567148 + L1MB3 LINE L1 5281 5648 -535 1599 158 85 16 chr3 60957430 60957747 -166566831 - MER44D DNA MER2_type 0 609 1 2767 152 13 28 chr3 60957747 60958292 -166566286 + L1MB3 LINE L1 5647 6183 0 362 137 59 21 chr3 60958631 60958787 -166565791 - MER4C LTR ERV1 0 465 277 535 58 0 0 chr3 60958805 60958874 -166565704 - MER4A LTR ERV1 -241 423 355 2110 111 15 44 chr3 60958920 60959307 -166565271 - MER4A LTR ERV1 -238 461 1 2294 187 82 40 chr3 60959347 60959695 -166564883 + MER50 LTR ERV1 10 342 -392 1888 69 7 69 chr3 60959695 60959969 -166564609 + AluY SINE Alu 39 295 -16 2294 187 82 40 chr3 60959969 60960316 -166564262 + MER50 LTR ERV1 342 734 0 9442 204 79 25 chr3 60960492 60961927 -166562651 - L1MB7 LINE L1 -32 6650 5293 1751 175 14 7 chr3 60961927 60962213 -166562365 + AluJb SINE Alu 5 292 -20 9442 204 79 25 chr3 60962213 60962469 -166562109 - L1MB7 LINE L1 -1389 5293 5052 213 39 0 0 chr3 60962469 60962495 -166562083 + (TTA)n Simple_repeat Simple_repeat 1 26 0 1744 155 0 38 chr3 60962495 60962785 -166561793 - AluJb SINE Alu -32 280 2 9442 204 79 25 chr3 60962785 60962845 -166561733 - L1MB7 LINE L1 -1630 5052 4997 2388 85 7 0 chr3 60962845 60963150 -166561428 - AluSx SINE Alu -5 307 1 9442 204 79 25 chr3 60963150 60964332 -166560246 - L1MB7 LINE L1 -1685 4997 3880 1012 202 0 0 chr3 60964332 60964505 -166560073 - FAM SINE Alu -2 173 1 9442 204 79 25 chr3 60964505 60965772 -166558806 - L1MB7 LINE L1 -2802 3880 2212 1151 199 170 52 chr3 60965835 60966276 -166558302 + MLT1D LTR MaLR 13 505 0 4190 221 63 55 chr3 60966283 60967089 -166557489 - L1MB7 LINE L1 -4586 2060 1262 2207 149 0 0 chr3 60967089 60967398 -166557180 - AluSc SINE Alu 0 309 1 4190 221 63 55 chr3 60967398 60967420 -166557158 - L1MB7 LINE L1 -5384 1262 1242 206 0 69 0 chr3 60967420 60967449 -166557129 + (CTTTG)n Simple_repeat Simple_repeat 3 33 0 4190 221 63 55 chr3 60967449 60967464 -166557114 - L1MB7 LINE L1 -5404 1242 1229 1897 159 9 44 chr3 60967464 60967784 -166556794 - AluJb SINE Alu -3 309 1 4190 221 63 55 chr3 60967784 60968832 -166555746 - L1MB7 LINE L1 -5417 1229 138 5122 53 30 2 chr3 60968832 60969474 -166555104 + PABL_A LTR ERV1 1 660 0 4190 221 63 55 chr3 60969474 60969607 -166554971 - L1MB7 LINE L1 -6508 138 8 2461 78 0 31 chr3 60969678 60969998 -166554580 + AluY SINE Alu 1 310 -1 24 32 0 0 chr3 60970153 60970184 -166554394 + AT_rich Low_complexity Low_complexity 1 31 0 1975 130 34 23 chr3 60970190 60970543 -166554035 + MER41C LTR ERV1 1 357 -197 261 210 0 34 chr3 60970543 60970719 -166553859 + (TA)n Simple_repeat Simple_repeat 1 170 0 1041 168 84 0 chr3 60970737 60970940 -166553638 + MER41C LTR ERV1 335 554 0 939 201 77 41 chr3 60970958 60971322 -166553256 + L1MC5 LINE L1 7509 7885 -76 1407 226 64 35 chr3 60971328 60971814 -166552764 - LTR24B LTR ERV1 -7 569 70 855 253 35 42 chr3 60972012 60972297 -166552281 + Charlie8 DNA MER1_type 2 284 -2133 25 0 0 0 chr3 60973724 60973749 -166550829 + AT_rich Low_complexity Low_complexity 1 25 0 310 261 34 11 chr3 60973991 60974079 -166550499 - L1MC4 LINE L1 -1339 6703 6614 * 350 292 0 0 chr3 60974003 60974092 -166550486 + L1MC4 LINE L1 6614 6702 -1340 237 196 0 0 chr3 60974145 60974201 -166550377 + (TA)n Simple_repeat Simple_repeat 1 56 0 2261 113 0 10 chr3 60974426 60974736 -166549842 - AluSx SINE Alu -5 307 1 294 186 21 31 chr3 60974758 60974855 -166549723 - L1ME4a LINE L1 -1 6120 6025 606 225 193 7 chr3 60974898 60975178 -166549400 - L1ME4a LINE L1 -201 5920 5589 225 0 0 0 chr3 60976362 60976387 -166548191 + (A)n Simple_repeat Simple_repeat 1 25 0 405 0 0 0 chr3 60977200 60977245 -166547333 + (TG)n Simple_repeat Simple_repeat 2 46 0 287 296 173 0 chr3 60977819 60977981 -166546597 + MLT1K LTR MaLR 80 269 -319 1029 202 78 4 chr3 60978134 60978377 -166546201 + MIR SINE MIR 2 262 0 423 172 58 0 chr3 60978383 60978470 -166546108 + MIR SINE MIR 171 262 0 255 191 0 0 chr3 60978485 60978532 -166546046 - L2 LINE L2 -1 3312 3266 1088 155 97 45 chr3 60978552 60978842 -166545736 - MER33 DNA MER1_type -1 323 19 643 306 52 92 chr3 60979471 60980193 -166544385 - L2 LINE L2 0 3272 2580 331 320 127 33 chr3 60980452 60980633 -166543945 - L2 LINE L2 -252 3061 2864 442 259 21 63 chr3 60981801 60981944 -166542634 - MIR SINE MIR -118 144 8 2558 139 19 11 chr3 60983572 60984039 -166540539 + L1MB3 LINE L1 5676 6146 -37 2238 83 30 3 chr3 60984089 60984389 -166540189 - AluY SINE Alu -3 308 1 185 226 158 38 chr3 60985947 60986080 -166538498 - L2 LINE L2 -838 2476 2328 407 279 34 95 chr3 60986559 60986631 -166537947 + MER102a DNA MER1_type 85 160 -1257 2299 91 3 0 chr3 60986631 60986917 -166537661 + AluSc SINE Alu 2 288 -21 407 279 34 95 chr3 60986917 60987106 -166537472 + MER102a DNA MER1_type 160 330 0 22 70 0 0 chr3 60987842 60987885 -166536693 + AT_rich Low_complexity Low_complexity 1 43 0 1747 125 68 0 chr3 60988235 60988514 -166536064 + AluSx SINE Alu 1 298 -14 193 225 0 0 chr3 60988578 60988618 -166535960 + L2 LINE L2 2201 2240 -1074 * 241 282 182 0 chr3 60988617 60988727 -166535851 + L2 LINE L2 3184 3313 0 24 0 0 0 chr3 60988960 60988984 -166535594 + AT_rich Low_complexity Low_complexity 1 24 0 757 207 67 0 chr3 60988984 60989148 -166535430 - AluJb SINE Alu -1 311 137 315 333 106 0 chr3 60989537 60989678 -166534900 + MIR SINE MIR 21 176 -86 1390 242 202 56 chr3 60989686 60990650 -166533928 - L2 LINE L2 -4 3309 2158 209 209 0 0 chr3 60991088 60991131 -166533447 + GA-rich Low_complexity Low_complexity 1 43 0 186 316 25 13 chr3 60991461 60991540 -166533038 + MIR SINE MIR 111 190 -72 239 259 179 0 chr3 60991928 60992040 -166532538 + MIR SINE MIR 107 238 -24 235 262 24 12 chr3 60992065 60992149 -166532429 + MIR3 SINE MIR 117 201 -7 384 315 102 26 chr3 60992241 60992524 -166532054 - L2 LINE L2 -168 3104 2790 346 196 141 0 chr3 60992575 60992667 -166531911 - MIR SINE MIR 0 262 158 180 208 0 42 chr3 60992813 60992861 -166531717 - L2 LINE L2 -1 3312 3267 1358 166 0 5 chr3 60994322 60994539 -166530039 - AluJb SINE Alu -12 300 85 2182 78 0 3 chr3 60996611 60996927 -166527651 - AluY SINE Alu 0 315 1 2167 132 3 6 chr3 60998410 60998721 -166525857 - AluSx SINE Alu -2 310 1 2416 67 0 0 chr3 60999040 60999322 -166525256 + AluY SINE Alu 1 282 -29 208 0 0 0 chr3 60999322 60999345 -166525233 + (TAAA)n Simple_repeat Simple_repeat 2 148 0 225 262 252 0 chr3 61002027 61002134 -166522444 - L2 LINE L2 -8 3305 3172 417 259 192 42 chr3 61002405 61002499 -166522079 - L2 LINE L2 -422 2892 2813 2248 109 14 0 chr3 61002499 61002793 -166521785 - AluSg SINE Alu -12 298 1 417 259 192 42 chr3 61002793 61002984 -166521594 - L2 LINE L2 -501 2813 2564 2352 62 0 0 chr3 61003876 61004151 -166520427 - AluY SINE Alu -23 288 14 2388 90 0 19 chr3 61006383 61006694 -166517884 + AluY SINE Alu 1 305 -6 1423 184 60 11 chr3 61006764 61007047 -166517531 - AluJo SINE Alu -11 301 5 2383 61 3 0 chr3 61008616 61008909 -166515669 - AluY SINE Alu -17 294 1 2013 156 0 0 chr3 61009041 61009342 -166515236 + AluJb SINE Alu 1 301 -11 17202 120 26 16 chr3 61009856 61012548 -166512030 - Tigger2 DNA MER2_type 0 2718 1 214 352 57 23 chr3 61012679 61012767 -166511811 + MIR3 SINE MIR 1 91 -117 1191 140 17 0 chr3 61013124 61013303 -166511275 - AluSg/x SINE Alu 0 312 131 1843 149 7 3 chr3 61015580 61015862 -166508716 + AluJb SINE Alu 2 284 -28 219 264 165 41 chr3 61017638 61017759 -166506819 + MIR3 SINE MIR 13 148 -60 1508 60 0 0 chr3 61018022 61018204 -166506374 - AluY SINE Alu -5 306 125 230 203 0 95 chr3 61018373 61018447 -166506131 + MLT1F1 LTR MaLR 45 111 -456 2287 166 132 6 chr3 61018458 61018967 -166505611 + L1MD3 LINE L1 7407 7985 -10 2122 131 0 13 chr3 61018967 61019302 -166505276 + AluSq SINE Alu 1 313 0 2287 166 132 6 chr3 61019302 61019315 -166505263 + L1MD3 LINE L1 7985 7995 0 579 275 126 5 chr3 61019753 61019960 -166504618 + MIR SINE MIR 5 236 -26 208 376 28 28 chr3 61019978 61020087 -166504491 - MIR SINE MIR -66 196 88 313 288 104 34 chr3 61020455 61020637 -166503941 - MIR3 SINE MIR 0 208 13 1911 161 24 0 chr3 61020731 61021029 -166503549 + AluJb SINE Alu 3 307 -5 405 301 80 75 chr3 61021192 61021418 -166503160 - MIR SINE MIR -14 248 22 1072 232 129 79 chr3 61022180 61022334 -166502244 - L1ME3A LINE L1 -15 6155 6010 2067 115 14 4 chr3 61022334 61022642 -166501936 - AluSx SINE Alu 0 311 1 2355 94 0 10 chr3 61022642 61022949 -166501629 - AluSx SINE Alu -8 304 1 1072 232 129 79 chr3 61022949 61023336 -166501242 - L1ME3A LINE L1 -159 6011 5585 22 0 0 0 chr3 61023622 61023644 -166500934 + AT_rich Low_complexity Low_complexity 1 22 0 853 168 0 0 chr3 61023645 61023770 -166500808 - FLAM_C SINE Alu -18 125 1 181 341 92 29 chr3 61024688 61024861 -166499717 + MIR3 SINE MIR 24 207 -1 2388 83 0 3 chr3 61025351 61025652 -166498926 - AluSx SINE Alu -12 300 1 22 0 0 0 chr3 61026624 61026646 -166497932 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 61026796 61026817 -166497761 + GC_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr3 61026966 61026991 -166497587 + GC_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr3 61026998 61027026 -166497552 + GC_rich Low_complexity Low_complexity 1 28 0 185 196 62 124 chr3 61027487 61027584 -166496994 - MER5A DNA MER1_type -91 98 8 257 200 0 18 chr3 61027729 61027784 -166496794 - MIR SINE MIR -112 150 97 269 237 76 5 chr3 61029240 61029345 -166495233 + MIR SINE MIR 42 150 -58 321 222 28 136 chr3 61029692 61029868 -166494710 + MIR SINE MIR 24 180 -82 183 214 89 18 chr3 61030706 61030762 -166493816 + MIR SINE MIR 127 186 -76 1588 141 107 31 chr3 61031009 61031299 -166493279 - AluJo SINE Alu 0 312 1 332 130 0 0 chr3 61031658 61031712 -166492866 + Alu SINE Alu 214 267 -34 722 240 122 22 chr3 61031927 61032198 -166492380 - MER5C DNA MER1_type 0 324 27 1713 145 24 45 chr3 61032626 61032915 -166491663 - AluJo SINE Alu -19 293 11 3130 173 33 26 chr3 61032915 61033576 -166491002 - L1MA4 LINE L1 -114 6186 5521 438 214 170 6 chr3 61033790 61033972 -166490606 - L1MC5 LINE L1 -492 7469 7258 287 286 31 62 chr3 61034113 61034274 -166490304 - L2 LINE L2 -619 2695 2540 201 286 0 0 chr3 61034369 61034418 -166490160 - L2 LINE L2 -3 3269 3221 2419 97 7 3 chr3 61035079 61035388 -166489190 - AluSx SINE Alu -2 310 1 1385 161 25 65 chr3 61035952 61036231 -166488347 - AluJo SINE Alu -12 300 33 252 260 192 0 chr3 61036252 61036356 -166488222 - L1ME3 LINE L1 -2 6160 6037 195 159 23 0 chr3 61036707 61036751 -166487827 - L2 LINE L2 -348 2966 2922 302 276 67 42 chr3 61037918 61038093 -166486485 - L1ME3 LINE L1 -330 5791 5611 2058 115 17 10 chr3 61038703 61038999 -166485579 - AluSx SINE Alu -14 298 1 3294 184 49 43 chr3 61040240 61040602 -166483976 - L1MB4 LINE L1 -42 7557 7199 2491 90 0 3 chr3 61040602 61040914 -166483664 - AluY SINE Alu 0 311 1 3294 184 49 43 chr3 61040914 61041187 -166483391 - L1MB4 LINE L1 -400 7199 6929 619 90 0 0 chr3 61041187 61041276 -166483302 - AluSc SINE Alu -6 303 215 3294 184 49 43 chr3 61041276 61041619 -166482959 - L1MB4 LINE L1 -670 6929 6556 3802 144 16 0 chr3 61041630 61042246 -166482332 - L1MB4 LINE L1 -5837 1728 1103 367 156 22 126 chr3 61042241 61042376 -166482202 - L1MB4 LINE L1 -7431 134 14 * 1419 195 28 6 chr3 61042377 61042695 -166481883 - L1M4 LINE L1 -3372 2774 2450 207 146 0 0 chr3 61042720 61042761 -166481817 + (TA)n Simple_repeat Simple_repeat 1 41 0 309 286 0 0 chr3 61042809 61042886 -166481692 - L1ME3A LINE L1 -302 5868 5792 1037 191 99 25 chr3 61042906 61043189 -166481389 - L1M4 LINE L1 -1471 4675 4372 1339 230 65 25 chr3 61043192 61043592 -166480986 - LTR52 LTR ERVL -5 416 1 6066 173 37 12 chr3 61043601 61044964 -166479614 - L1MC1 LINE L1 -15 7113 5686 333 0 0 0 chr3 61044964 61045001 -166479577 + (TG)n Simple_repeat Simple_repeat 2 38 0 6066 173 37 12 chr3 61045001 61045513 -166479065 - L1MC1 LINE L1 -1442 5686 5188 421 184 161 81 chr3 61045513 61045687 -166478891 - AluJ SINE Alu -15 297 110 1534 118 114 29 chr3 61045692 61046050 -166478528 - MSTA LTR MaLR -4 424 2 680 180 36 0 chr3 61046050 61046161 -166478417 - AluJ SINE Alu -187 115 1 3740 236 42 11 chr3 61046164 61047161 -166477417 - L1MC1 LINE L1 -1749 5192 4165 818 249 75 12 chr3 61047155 61047538 -166477040 - L1MC1 LINE L1 -4761 2361 1780 * 895 246 79 23 chr3 61047732 61048074 -166476504 - L1MC1 LINE L1 -4887 1536 1176 307 218 99 42 chr3 61048195 61048337 -166476241 - L1MC1 LINE L1 -5447 976 827 205 274 71 12 chr3 61048471 61048555 -166476023 + L2 LINE L2 2687 2775 -539 189 318 54 68 chr3 61048602 61048750 -166475828 + L2 LINE L2 3168 3313 0 288 263 97 26 chr3 61050130 61050244 -166474334 - MIR3 SINE MIR -52 156 35 187 384 26 43 chr3 61052250 61052482 -166472096 - L2 LINE L2 -86 3186 2959 316 291 47 16 chr3 61052798 61052925 -166471653 + MIR SINE MIR 95 225 -37 208 369 0 0 chr3 61053143 61053208 -166471370 - L2 LINE L2 -3 3310 3246 1805 120 74 0 chr3 61056039 61056323 -166468255 + AluJb SINE Alu 1 305 -7 2169 110 7 0 chr3 61058204 61058504 -166466074 + AluSx SINE Alu 1 302 -10 207 0 0 0 chr3 61060011 61060034 -166464544 + (A)n Simple_repeat Simple_repeat 1 23 0 2298 82 0 7 chr3 61062377 61062681 -166461897 - AluSx SINE Alu -2 310 9 2193 42 0 0 chr3 61064735 61064995 -166459583 - AluY SINE Alu -15 296 37 180 0 0 0 chr3 61066770 61066790 -166457788 + (CCCCAG)n Simple_repeat Simple_repeat 3 22 0 282 205 24 24 chr3 61066889 61067016 -166457562 + GA-rich Low_complexity Low_complexity 5 131 0 259 124 6 83 chr3 61067064 61067233 -166457345 + (GGA)n Simple_repeat Simple_repeat 3 158 0 477 109 5 73 chr3 61067260 61067452 -166457126 + (GGA)n Simple_repeat Simple_repeat 1 179 0 1213 236 70 31 chr3 61071112 61071439 -166453139 + MER58B DNA MER1_type 2 341 0 429 70 0 0 chr3 61074814 61074871 -166449707 + (CA)n Simple_repeat Simple_repeat 1 57 0 732 233 105 0 chr3 61078262 61078472 -166446106 + Charlie1 DNA MER1_type 2 233 -2528 486 140 246 0 chr3 61078462 61078576 -166446002 + Charlie1 DNA MER1_type 2620 2761 0 * 189 147 0 0 chr3 61080618 61080652 -166443926 + (CA)n Simple_repeat Simple_repeat 1 34 0 931 188 53 14 chr3 61081136 61081344 -166443234 - MIR SINE MIR -45 217 2 25 0 0 0 chr3 61081732 61081757 -166442821 + AT_rich Low_complexity Low_complexity 1 25 0 353 109 16 0 chr3 61085674 61085738 -166438840 + (CA)n Simple_repeat Simple_repeat 2 66 0 377 229 108 51 chr3 61087369 61087526 -166437052 + MIR SINE MIR 93 258 -4 360 284 11 11 chr3 61090878 61090973 -166433605 - L1MC4 LINE L1 -1339 6703 6609 385 347 65 12 chr3 61092541 61092711 -166431867 - MIR SINE MIR -11 251 73 1848 167 131 30 chr3 61093281 61093717 -166430861 + MLT2B1 LTR ERVL 1 480 -40 264 149 0 0 chr3 61093717 61093764 -166430814 + (CA)n Simple_repeat Simple_repeat 2 48 0 376 85 0 34 chr3 61093764 61093823 -166430755 + MLT2B1 LTR ERVL 459 515 0 899 136 0 0 chr3 61094014 61094146 -166430432 - FLAM_C SINE Alu 0 133 2 278 329 92 7 chr3 61094435 61094587 -166429991 + MIR SINE MIR 91 255 -7 280 346 87 0 chr3 61096055 61096159 -166428419 + L2 LINE L2 3155 3267 -5 249 355 54 32 chr3 61096572 61096758 -166427820 + L3b LINE CR1 1319 1508 -75 1773 133 65 0 chr3 61097590 61097869 -166426709 - AluJb SINE Alu -15 297 1 457 187 86 43 chr3 61097874 61098013 -166426565 - Charlie2b DNA MER1_type -874 1908 1844 335 296 6 50 chr3 61098013 61098172 -166426406 - Charlie2b DNA MER1_type -1074 1788 1557 539 318 88 46 chr3 61098702 61099136 -166425442 - L2 LINE L2 -1 3271 2820 192 77 0 0 chr3 61099478 61099504 -166425074 + (A)n Simple_repeat Simple_repeat 1 26 0 338 239 25 132 chr3 61100666 61100863 -166423715 - L1ME LINE L1 -339 5782 5607 190 256 179 13 chr3 61103990 61104068 -166420510 + L2 LINE L2 3168 3258 -14 668 188 11 83 chr3 61105449 61105569 -166419009 - MER5B DNA MER1_type -5 173 69 2234 125 0 3 chr3 61105569 61105881 -166418697 - AluSx SINE Alu -1 311 1 668 188 11 83 chr3 61105881 61105941 -166418637 - MER5B DNA MER1_type -109 69 6 185 385 0 0 chr3 61106320 61106385 -166418193 + L3 LINE CR1 1499 1563 -14 276 282 12 24 chr3 61108018 61108103 -166416475 + L2 LINE L2 3189 3272 0 279 319 46 0 chr3 61110152 61110269 -166414309 - MIR SINE MIR -70 138 30 222 191 0 0 chr3 61111375 61111422 -166413156 + (CA)n Simple_repeat Simple_repeat 1 47 0 189 259 138 0 chr3 61111695 61111753 -166412825 - L2 LINE L2 -86 3186 3121 232 329 0 14 chr3 61113426 61113496 -166411082 - MER5C DNA MER1_type -252 72 4 264 271 138 49 chr3 61113690 61113893 -166410685 + L2 LINE L2 1459 1679 -1635 230 310 138 0 chr3 61114608 61114724 -166409854 + L2 LINE L2 3134 3265 -7 211 309 163 46 chr3 61115095 61115506 -166409072 - L2 LINE L2 -1 3271 2813 264 186 0 0 chr3 61117790 61117849 -166406729 + (CA)n Simple_repeat Simple_repeat 1 59 0 712 294 84 0 chr3 61118610 61118824 -166405754 - MIR SINE MIR -29 233 2 436 291 58 50 chr3 61120416 61120467 -166404111 - MIR SINE MIR -8 254 205 2256 104 13 0 chr3 61120467 61120774 -166403804 + AluSx SINE Alu 2 312 0 436 291 58 50 chr3 61120774 61120963 -166403615 - MIR SINE MIR -57 205 12 261 302 65 22 chr3 61122819 61122958 -166401620 - MIR3 SINE MIR -21 187 43 899 236 39 5 chr3 61123111 61123319 -166401259 + MER20 DNA MER1_type 1 215 -4 284 254 107 58 chr3 61124457 61124630 -166399948 - MIR SINE MIR -70 192 9 297 0 0 0 chr3 61125345 61125378 -166399200 + (TGAA)n Simple_repeat Simple_repeat 2 34 0 275 289 44 0 chr3 61126353 61126443 -166398135 - MIR3 SINE MIR -15 193 100 488 167 79 24 chr3 61127008 61127134 -166397444 + L1MB5 LINE L1 6034 6166 -8 2379 111 0 0 chr3 61127619 61127925 -166396653 + AluSx SINE Alu 1 306 -6 22 0 0 0 chr3 61128151 61128173 -166396405 + AT_rich Low_complexity Low_complexity 1 22 0 440 265 88 79 chr3 61128803 61129131 -166395447 - L2 LINE L2 -94 3178 2848 323 357 53 6 chr3 61129629 61129800 -166394778 - MIR3 SINE MIR -17 191 13 444 160 0 0 chr3 61130952 61131027 -166393551 + MER116 DNA Mariner 1 75 -5 22 0 0 0 chr3 61131670 61131692 -166392886 + AT_rich Low_complexity Low_complexity 1 22 0 238 236 87 55 chr3 61133851 61133978 -166390600 - MIR3 SINE MIR -22 186 56 2239 128 0 0 chr3 61135314 61135618 -166388960 - AluSq SINE Alu -9 304 1 1276 171 145 43 chr3 61135642 61135872 -166388706 + MER2 DNA MER2_type 11 281 -64 1868 90 116 19 chr3 61135872 61136140 -166388438 - AluSx SINE Alu -18 294 1 1276 171 145 43 chr3 61136140 61136213 -166388365 + MER2 DNA MER2_type 281 345 0 1877 178 13 0 chr3 61136245 61136549 -166388029 - AluJo SINE Alu -4 308 1 1754 187 3 3 chr3 61136801 61137100 -166387478 - AluJo SINE Alu -13 299 1 23 0 0 0 chr3 61138360 61138383 -166386195 + AT_rich Low_complexity Low_complexity 1 23 0 207 225 0 0 chr3 61138643 61138683 -166385895 + (TA)n Simple_repeat Simple_repeat 2 41 0 301 181 9 162 chr3 61138683 61138788 -166385790 + L1MC4 LINE L1 6614 6702 -1340 209 258 30 0 chr3 61138790 61138856 -166385722 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 449 258 0 0 chr3 61139113 61139202 -166385376 - L1MC4 LINE L1 -1339 6703 6615 342 45 0 0 chr3 61139202 61139246 -166385332 + (CA)n Simple_repeat Simple_repeat 1 44 0 180 111 0 0 chr3 61140313 61140340 -166384238 + (TCC)n Simple_repeat Simple_repeat 1 27 0 412 276 155 0 chr3 61141445 61141561 -166383017 + L2 LINE L2 3138 3271 -1 297 0 0 0 chr3 61142877 61142910 -166381668 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 361 293 42 47 chr3 61143064 61143255 -166381323 - MARNA DNA Mariner -6 580 391 204 247 104 39 chr3 61143266 61143343 -166381235 - L2 LINE L2 0 3272 3191 345 312 147 18 chr3 61144294 61144464 -166380114 - L2 LINE L2 -4 3309 3118 213 299 131 28 chr3 61144581 61144688 -166379890 - L2 LINE L2 -18 3254 3137 2292 108 0 13 chr3 61144717 61145031 -166379547 + AluSx SINE Alu 1 310 -2 285 325 13 0 chr3 61145421 61145498 -166379080 - L2 LINE L2 -2 3270 3193 2100 123 7 0 chr3 61146507 61146800 -166377778 - AluSx SINE Alu -17 295 1 416 241 60 23 chr3 61146950 61147083 -166377495 - L1MC4 LINE L1 -1878 5930 5793 970 313 72 27 chr3 61147341 61147968 -166376610 + L1MC4a LINE L1 5277 5931 -1877 502 284 24 34 chr3 61149882 61150052 -166374526 + MIR3 SINE MIR 34 201 -7 395 323 32 48 chr3 61150191 61150439 -166374139 + L3 LINE CR1 1332 1575 -2 2011 214 52 39 chr3 61152089 61152914 -166371664 - L1MC4 LINE L1 -365 5801 4967 445 273 122 0 chr3 61152919 61153058 -166371520 - L1ME3A LINE L1 -8 6162 6007 302 238 59 2 chr3 61153741 61153849 -166370729 + MIR SINE MIR 35 146 -62 26 0 0 0 chr3 61154554 61154580 -166369998 + GC_rich Low_complexity Low_complexity 1 26 0 309 302 43 26 chr3 61156888 61157004 -166367574 + MIR3 SINE MIR 91 208 0 196 333 0 0 chr3 61157481 61157535 -166367043 + MIR SINE MIR 99 152 -110 272 250 265 7 chr3 61158301 61158437 -166366141 - MIR3 SINE MIR -7 201 31 25 0 0 0 chr3 61159029 61159054 -166365524 + AT_rich Low_complexity Low_complexity 1 25 0 429 20 0 0 chr3 61159610 61159660 -166364918 + (CA)n Simple_repeat Simple_repeat 1 50 0 270 259 45 27 chr3 61159819 61159931 -166364647 + MIR3 SINE MIR 86 199 -9 271 304 0 54 chr3 61161246 61161394 -166363184 + MIR3 SINE MIR 58 197 -11 1619 149 9 59 chr3 61161884 61162206 -166362372 - AluJo SINE Alu -6 306 1 484 303 57 41 chr3 61163136 61163380 -166361198 + MIR SINE MIR 1 248 -14 805 266 115 0 chr3 61163741 61163967 -166360611 + MIR SINE MIR 11 262 0 327 301 7 44 chr3 61163975 61164111 -166360467 - L2 LINE L2 -1 3312 3182 438 247 63 52 chr3 61165794 61165968 -166358610 - MER5B DNA MER1_type 0 178 3 1653 138 0 16 chr3 61166270 61166524 -166358054 + L1PB4 LINE L1 5895 6144 -12 483 224 20 0 chr3 61166619 61166717 -166357861 - MIR SINE MIR -72 190 91 276 30 0 0 chr3 61171653 61171686 -166352892 + (CAACC)n Simple_repeat Simple_repeat 5 37 0 1892 123 29 0 chr3 61171724 61172031 -166352547 + AluSg SINE Alu 1 315 0 609 167 0 0 chr3 61172183 61172322 -166352256 + AluSg/x SINE Alu 209 347 0 225 184 83 18 chr3 61173013 61173122 -166351456 + (TTATA)n Simple_repeat Simple_repeat 1 116 0 1989 254 53 56 chr3 61174000 61175067 -166349511 + L1MC4 LINE L1 6038 7098 -944 348 236 8 55 chr3 61175043 61175170 -166349408 + L1MC4 LINE L1 7922 8042 0 * 1557 183 13 26 chr3 61176463 61176774 -166347804 + AluJb SINE Alu 1 307 -5 213 98 0 118 chr3 61178889 61178940 -166345638 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 22 0 0 0 chr3 61179250 61179272 -166345306 + AT_rich Low_complexity Low_complexity 1 22 0 1487 162 62 10 chr3 61179665 61179955 -166344623 - AluSx SINE Alu -7 305 1 316 387 129 10 chr3 61180209 61180604 -166343974 + L2 LINE L2 2811 3252 -20 22 0 0 0 chr3 61180783 61180805 -166343773 + AT_rich Low_complexity Low_complexity 1 22 0 312 209 82 64 chr3 61180805 61180915 -166343663 + L1MCa LINE L1 1980 2091 -4335 529 68 95 0 chr3 61180917 61181064 -166343514 + (TA)n Simple_repeat Simple_repeat 2 162 0 1712 95 44 24 chr3 61181329 61181581 -166342997 + AluSx SINE Alu 39 295 -17 595 274 42 37 chr3 61182553 61182743 -166341835 + MIR SINE MIR 20 210 -52 1647 156 9 40 chr3 61182771 61183092 -166341486 + AluJo SINE Alu 1 311 -1 1458 215 101 14 chr3 61184570 61185076 -166339502 - L1ME LINE L1 -440 5793 5229 5691 250 133 33 chr3 61185088 61188109 -166336469 - L1MEc LINE L1 -1113 5102 1703 2065 99 0 3 chr3 61188109 61188391 -166336187 - AluSp SINE Alu -32 281 1 5691 250 133 33 chr3 61188391 61188949 -166335629 - L1MEc LINE L1 -4512 1703 1202 966 308 106 34 chr3 61188974 61189941 -166334637 - L1MEc LINE L1 -5321 1075 40 247 289 26 13 chr3 61189948 61190024 -166334554 + L2 LINE L2 2622 2698 -616 381 206 20 116 chr3 61190045 61190148 -166334430 - L1MC4 LINE L1 -1 8041 7964 1565 163 0 86 chr3 61190148 61190485 -166334093 - AluJo SINE Alu -4 308 1 381 206 20 116 chr3 61190485 61190580 -166333998 - L1MC4 LINE L1 -78 7964 7862 363 323 77 21 chr3 61190581 61190866 -166333712 + L2 LINE L2 2676 2976 -338 266 253 0 121 chr3 61191179 61191270 -166333308 + L2 LINE L2 3193 3272 0 2174 125 0 0 chr3 61193430 61193743 -166330835 - AluSq SINE Alu 0 313 1 27 29 0 0 chr3 61194580 61194614 -166329964 + AT_rich Low_complexity Low_complexity 1 34 0 750 304 14 0 chr3 61194753 61194960 -166329618 - MIR SINE MIR -48 214 5 27 0 0 0 chr3 61196345 61196372 -166328206 + AT_rich Low_complexity Low_complexity 1 27 0 209 188 14 43 chr3 61196410 61196479 -166328099 + G-rich Low_complexity Low_complexity 3 69 0 27 0 0 0 chr3 61196955 61196982 -166327596 + AT_rich Low_complexity Low_complexity 1 27 0 588 73 0 0 chr3 61199887 61199969 -166324609 + (CA)n Simple_repeat Simple_repeat 1 82 0 2273 91 7 13 chr3 61202083 61202392 -166322186 + AluSq SINE Alu 1 307 -6 190 244 0 0 chr3 61202818 61202863 -166321715 - MIR SINE MIR -86 122 78 219 174 65 0 chr3 61203404 61203450 -166321128 - L2 LINE L2 -20 3252 3204 1333 261 18 12 chr3 61203729 61204066 -166320512 + MER58B DNA MER1_type 3 341 0 21 36 0 0 chr3 61204283 61204311 -166320267 + AT_rich Low_complexity Low_complexity 1 28 0 306 106 0 0 chr3 61204866 61204913 -166319665 + (CA)n Simple_repeat Simple_repeat 1 47 0 367 211 58 39 chr3 61207216 61207320 -166317258 - MIR3 SINE MIR -16 192 87 2872 115 12 14 chr3 61207551 61207977 -166316601 + LTR3 LTR ERVK 1 425 -7 1909 105 89 0 chr3 61208672 61208929 -166315649 + AluSx SINE Alu 11 290 -22 189 0 0 0 chr3 61208929 61208950 -166315628 + (GA)n Simple_repeat Simple_repeat 2 22 0 351 62 0 0 chr3 61209038 61209086 -166315492 + MADE1 DNA Mariner 33 80 0 464 299 46 23 chr3 61210065 61210239 -166314339 + MIR3 SINE MIR 16 193 -15 219 322 22 0 chr3 61211817 61211907 -166312671 - MIR SINE MIR -17 245 154 445 225 131 6 chr3 61212924 61213084 -166311494 - MIR SINE MIR -8 254 75 367 245 0 105 chr3 61213112 61213255 -166311323 + L2 LINE L2 3186 3313 0 399 276 70 26 chr3 61214346 61214502 -166310076 + MIR3 SINE MIR 41 203 -5 3460 221 59 16 chr3 61215169 61216265 -166308313 - L1ME1 LINE L1 -3 6232 5091 4827 146 29 2 chr3 61216265 61217721 -166306857 + L1PA14 LINE L1 4469 5966 -195 470 202 58 17 chr3 61217766 61217939 -166306639 - L1ME1 LINE L1 -4160 2236 2057 754 241 71 0 chr3 61217939 61218109 -166306469 - MER58A DNA MER1_type 0 224 43 3137 249 111 67 chr3 61218189 61219467 -166305111 - L1ME1 LINE L1 -4330 2066 846 2186 123 0 0 chr3 61219467 61219759 -166304819 - AluSx SINE Alu -20 292 1 3137 249 111 67 chr3 61219759 61219831 -166304747 - L1ME1 LINE L1 -5550 846 779 679 165 210 90 chr3 61219831 61220031 -166304547 - MER58A DNA MER1_type 0 224 1 3137 249 111 67 chr3 61220031 61220465 -166304113 - L1ME1 LINE L1 -5617 779 202 222 37 0 0 chr3 61221339 61221366 -166303212 + (A)n Simple_repeat Simple_repeat 1 27 0 319 283 9 53 chr3 61222431 61222544 -166302034 + MIR3 SINE MIR 49 156 -52 297 0 0 0 chr3 61223864 61223897 -166300681 + (TG)n Simple_repeat Simple_repeat 2 34 0 251 292 10 42 chr3 61226732 61226828 -166297750 + MIR3 SINE MIR 5 97 -111 359 288 7 34 chr3 61226835 61226981 -166297597 + L2 LINE L2 2930 3071 -201 22 0 0 0 chr3 61227042 61227064 -166297514 + AT_rich Low_complexity Low_complexity 1 22 0 6262 149 17 9 chr3 61227071 61228539 -166296039 + L1MA8 LINE L1 4812 6289 -2 213 416 0 0 chr3 61228550 61228639 -166295939 + L2 LINE L2 3134 3222 -50 185 302 0 0 chr3 61228679 61228742 -166295836 + MIR3 SINE MIR 136 198 -10 198 280 20 0 chr3 61229025 61229075 -166295503 + MIR3 SINE MIR 117 167 -41 186 373 0 0 chr3 61229639 61229714 -166294864 + MIR SINE MIR 79 153 -109 354 241 62 157 chr3 61230310 61230742 -166293836 + MLT1K LTR MaLR 194 584 -4 249 297 68 76 chr3 61231221 61231457 -166293121 - L2 LINE L2 -8 3264 3031 282 253 96 48 chr3 61231829 61231995 -166292583 - MER117 DNA MER1_type -20 177 4 2182 119 10 3 chr3 61232567 61232877 -166291701 + AluSx SINE Alu 1 312 0 2227 119 0 6 chr3 61233043 61233354 -166291224 + AluSc SINE Alu 1 309 0 519 60 15 0 chr3 61233475 61233542 -166291036 - AluSq/x SINE Alu -177 135 68 528 262 36 68 chr3 61234001 61234222 -166290356 + MIR SINE MIR 49 262 0 280 197 53 13 chr3 61236010 61236086 -166288492 - MER112 DNA MER1_type -48 212 134 2039 123 0 13 chr3 61236121 61236421 -166288157 + AluSx SINE Alu 1 296 -16 256 331 71 0 chr3 61237857 61237984 -166286594 + MIR SINE MIR 52 187 -75 285 216 50 122 chr3 61239149 61239260 -166285318 + MIR SINE MIR 13 114 -94 1171 198 167 4 chr3 61239260 61239518 -166285060 - AluSx SINE Alu -2 300 1 285 216 50 122 chr3 61239518 61239545 -166285033 + MIR SINE MIR 114 141 -67 15179 122 39 5 chr3 61239619 61241957 -166282621 + Tigger1 DNA MER2_type 1 2418 0 1026 222 57 0 chr3 61243520 61243732 -166280846 + MER58A DNA MER1_type 1 224 0 2299 107 0 22 chr3 61244679 61244998 -166279580 - AluSx SINE Alu 0 312 1 259 356 0 10 chr3 61245994 61246098 -166278480 - MIR SINE MIR -70 138 36 2160 92 10 7 chr3 61249541 61249834 -166274744 + AluY SINE Alu 1 294 -17 2245 213 103 7 chr3 61249834 61249966 -166274612 - L1ME2 LINE L1 -277 5887 5769 2363 69 78 0 chr3 61249966 61250300 -166274278 - L1PA13 LINE L1 -6 6157 5798 2245 213 103 7 chr3 61250300 61250430 -166274148 - L1ME2 LINE L1 -395 5769 5653 1744 138 0 12 chr3 61250430 61250684 -166273894 + AluSx SINE Alu 53 303 -9 2245 213 103 7 chr3 61250684 61251188 -166273390 - L1ME2 LINE L1 -511 5653 5041 1684 143 21 11 chr3 61252150 61252437 -166272141 + AluJo SINE Alu 13 302 -10 419 298 137 0 chr3 61252699 61252867 -166271711 + L2 LINE L2 3118 3308 -5 577 213 66 0 chr3 61253766 61253902 -166270676 - MIR SINE MIR -78 184 40 303 348 9 0 chr3 61254729 61254841 -166269737 - L2 LINE L2 -1 3312 3200 225 259 24 71 chr3 61255084 61255169 -166269409 + MIR SINE MIR 97 177 -85 * 515 270 117 61 chr3 61255152 61255382 -166269196 - MIR SINE MIR -4 258 16 319 299 30 45 chr3 61256632 61256766 -166267812 - MIR3 SINE MIR -15 193 62 2010 325 34 19 chr3 61256871 61257732 -166266846 + ERVL LTR ERVL 4597 5470 -294 1384 213 208 68 chr3 61258028 61258572 -166266006 + LTR41 LTR ERVL 1 620 -153 745 191 7 7 chr3 61258577 61258718 -166265860 - FLAM_A SINE Alu -1 141 1 411 153 30 137 chr3 61258731 61258862 -166265716 + LTR41 LTR ERVL 641 757 -16 195 42 0 0 chr3 61259161 61259185 -166265393 + (CA)n Simple_repeat Simple_repeat 1 24 0 239 336 39 39 chr3 61259198 61259326 -166265252 - MIR3 SINE MIR -66 142 15 914 281 99 40 chr3 61259769 61260264 -166264314 + L1ME1 LINE L1 38 561 -5835 1805 256 109 43 chr3 61260317 61260742 -166263836 + L1ME1 LINE L1 656 1052 -5344 799 259 46 9 chr3 61260742 61260958 -166263620 + MER58A DNA MER1_type 1 224 0 1805 256 109 43 chr3 61260958 61261328 -166263250 + L1ME1 LINE L1 1052 1396 -5000 1649 161 0 30 chr3 61261328 61261633 -166262945 - AluJo SINE Alu -16 296 1 1805 256 109 43 chr3 61261633 61261931 -166262647 + L1ME1 LINE L1 1396 1822 -4574 486 263 99 5 chr3 61261937 61262150 -166262428 + L1ME1 LINE L1 2086 2318 -4078 8106 232 65 21 chr3 61262174 61263296 -166261282 + L1ME1 LINE L1 2407 3478 -2737 2331 92 0 0 chr3 61263296 61263601 -166260977 - AluY SINE Alu -6 305 1 8106 232 65 21 chr3 61263601 61265070 -166259508 + L1ME1 LINE L1 3478 5101 -1114 1132 215 114 66 chr3 61265070 61265466 -166259112 - MLT1E2 LTR MaLR -161 465 51 1266 215 87 81 chr3 61265512 61266065 -166258513 + L1ME1 LINE L1 5675 6230 -5 192 267 76 57 chr3 61268023 61268128 -166256450 - MIR SINE MIR -30 232 126 203 296 34 95 chr3 61268803 61268982 -166255596 + MER5A DNA MER1_type 1 168 -21 * 299 259 43 99 chr3 61268828 61268990 -166255588 - MER5B DNA MER1_type -12 166 14 1032 239 22 4 chr3 61269215 61269445 -166255133 - MIR SINE MIR -27 235 2 5003 137 34 3 chr3 61269791 61270713 -166253865 + L1MA4 LINE L1 5235 6183 -186 2125 102 0 32 chr3 61270718 61271031 -166253547 + AluSx SINE Alu 1 303 -9 216 333 0 0 chr3 61271037 61271094 -166253484 + (CTA)n Simple_repeat Simple_repeat 1 57 0 401 253 61 20 chr3 61272136 61272235 -166252343 + MIR SINE MIR 34 136 -126 670 246 67 26 chr3 61273038 61273233 -166251345 - MIR SINE MIR -52 210 8 421 276 39 19 chr3 61273313 61273469 -166251109 + L1ME LINE L1 5601 5759 -362 1848 137 0 32 chr3 61274120 61274435 -166250143 - AluSx SINE Alu -7 305 1 503 150 0 0 chr3 61274768 61274848 -166249730 + MADE1 DNA Mariner 1 80 0 232 322 33 25 chr3 61275257 61275378 -166249200 + MIR SINE MIR 21 142 -120 * 487 234 72 68 chr3 61275374 61275596 -166248982 + L2 LINE L2 3090 3312 -1 192 349 91 0 chr3 61275732 61275798 -166248780 - L3b LINE CR1 -8 1575 1504 2408 148 112 14 chr3 61275855 61276301 -166248277 - MLT1D LTR MaLR 0 505 16 184 257 0 0 chr3 61276918 61276953 -166247625 + L2 LINE L2 3149 3183 -89 383 256 139 16 chr3 61278209 61278338 -166246240 + L2 LINE L2 3169 3313 0 2016 86 57 4 chr3 61279740 61280020 -166244558 + AluSq SINE Alu 1 295 -18 357 284 146 59 chr3 61280205 61280708 -166243870 + L2 LINE L2 2707 3312 -1 2012 138 0 3 chr3 61281175 61281487 -166243091 + AluSx SINE Alu 1 311 -1 338 291 162 0 chr3 61281925 61282073 -166242505 - MIR SINE MIR -70 192 21 188 338 127 31 chr3 61282360 61282588 -166241990 - L2 LINE L2 -192 3080 2831 888 211 0 0 chr3 61282955 61283111 -166241467 + FRAM SINE Alu 1 156 -10 707 294 98 63 chr3 61285069 61285692 -166238886 + L2 LINE L2 2179 2823 -491 246 261 0 14 chr3 61285959 61286028 -166238550 + MIR SINE MIR 93 160 -102 396 0 0 0 chr3 61286408 61286452 -166238126 + (CA)n Simple_repeat Simple_repeat 1 44 0 219 290 47 65 chr3 61286845 61286952 -166237626 + MIR SINE MIR 108 212 -50 231 213 21 0 chr3 61288181 61288228 -166236350 + (TGGA)n Simple_repeat Simple_repeat 1 48 0 223 299 108 36 chr3 61290940 61291107 -166233471 + MIR3 SINE MIR 16 194 -14 327 289 81 13 chr3 61291290 61291439 -166233139 + L1ME4a LINE L1 5946 6104 -17 215 297 29 66 chr3 61291561 61291796 -166232782 - MIR3 SINE MIR -31 231 8 212 210 346 12 chr3 61291984 61292065 -166232513 - L2 LINE L2 -1 3271 3164 755 185 123 0 chr3 61293868 61294014 -166230564 - MER45A DNA AcHobo -14 164 1 434 280 138 48 chr3 61295155 61295444 -166229134 + MLT1K LTR MaLR 174 488 -100 302 344 108 6 chr3 61295503 61295660 -166228918 - MIR SINE MIR -88 174 2 444 226 130 0 chr3 61298789 61298904 -166225674 + L1MB4 LINE L1 6050 6179 -1 207 0 0 0 chr3 61298957 61298980 -166225598 + (TTCA)n Simple_repeat Simple_repeat 1 23 0 1118 313 43 11 chr3 61298983 61299421 -166225157 - L2 LINE L2 -19 3294 2843 634 303 200 42 chr3 61299655 61300029 -166224549 - L2 LINE L2 -342 2972 2658 1981 132 0 0 chr3 61300029 61300370 -166224208 + AluJb SINE Alu 1 341 0 634 303 200 42 chr3 61300370 61300657 -166223921 - L2 LINE L2 -656 2658 2204 202 305 171 0 chr3 61300685 61300767 -166223811 + MIR3 SINE MIR 86 181 -27 263 250 0 0 chr3 61301828 61301884 -166222694 + L2 LINE L2 2999 3054 -218 517 309 76 18 chr3 61302749 61302972 -166221606 - MIR SINE MIR -16 246 11 563 202 89 8 chr3 61303214 61303338 -166221240 - L2 LINE L2 0 3313 3180 3004 288 61 16 chr3 61303431 61304581 -166219997 - L2 LINE L2 -1019 2295 1095 203 285 252 0 chr3 61304641 61304764 -166219814 - MIR SINE MIR -70 192 39 760 276 123 27 chr3 61306047 61306575 -166218003 - L2 LINE L2 -1 3312 2737 246 128 0 0 chr3 61307360 61307399 -166217179 + (TG)n Simple_repeat Simple_repeat 2 40 0 581 282 70 27 chr3 61307461 61307791 -166216787 + L1ME2 LINE L1 4691 5034 -1112 906 243 48 0 chr3 61307876 61308082 -166216496 + MIR SINE MIR 41 256 -6 1035 256 146 27 chr3 61308106 61308294 -166216284 + L1ME2 LINE L1 5122 5286 -878 1937 123 7 0 chr3 61308294 61308563 -166216015 + AluSx SINE Alu 27 297 -15 1035 256 146 27 chr3 61308563 61309142 -166215436 + L1ME2 LINE L1 5286 5980 -184 2196 105 0 32 chr3 61309174 61309487 -166215091 - AluSx SINE Alu -9 303 1 414 236 0 11 chr3 61309809 61309898 -166214680 + MIR SINE MIR 113 200 -62 344 219 8 34 chr3 61309898 61310050 -166214528 - MER46C DNA MER2_type -3 335 150 565 223 0 15 chr3 61310082 61310212 -166214366 + L1MB7 LINE L1 6046 6173 -11 237 261 153 27 chr3 61310240 61310351 -166214227 - MER46C DNA MER2_type -210 128 4 314 271 65 0 chr3 61310498 61310605 -166213973 - MER20B DNA MER1_type -668 115 2 338 336 18 18 chr3 61311315 61311425 -166213153 - MIR3 SINE MIR -54 154 45 455 314 99 6 chr3 61311527 61311699 -166212879 + MIR SINE MIR 17 204 -58 1122 202 75 3 chr3 61311899 61312189 -166212389 + MER58B DNA MER1_type 2 341 0 226 333 61 54 chr3 61312344 61312641 -166211937 + L1ME1 LINE L1 16 314 -6226 183 80 0 0 chr3 61312642 61312667 -166211911 + (A)n Simple_repeat Simple_repeat 1 25 0 2149 244 106 28 chr3 61313144 61314169 -166210409 + L1ME1 LINE L1 896 1967 -4573 1855 207 56 39 chr3 61314149 61314719 -166209859 + L1ME1 LINE L1 3729 4308 -2232 * 2854 216 93 36 chr3 61314717 61315213 -166209365 + L1ME1 LINE L1 4886 5352 -1208 2357 83 7 0 chr3 61315213 61315515 -166209063 - AluSp SINE Alu -9 304 1 2854 216 93 36 chr3 61315515 61315713 -166208865 + L1ME1 LINE L1 5352 5537 -1023 2237 118 3 7 chr3 61315713 61316017 -166208561 + AluSx SINE Alu 1 303 -9 2854 216 93 36 chr3 61316017 61316913 -166207665 + L1ME1 LINE L1 5537 6558 -2 189 0 0 0 chr3 61317246 61317267 -166207311 + (A)n Simple_repeat Simple_repeat 1 21 0 219 36 0 0 chr3 61317267 61317295 -166207283 + (CA)n Simple_repeat Simple_repeat 2 29 0 201 274 53 80 chr3 61317919 61318032 -166206546 - L2 LINE L2 -2 3270 3161 2433 81 0 0 chr3 61318519 61318814 -166205764 - AluY SINE Alu -16 295 1 203 133 0 0 chr3 61319179 61319209 -166205369 + (CA)n Simple_repeat Simple_repeat 1 30 0 192 125 0 0 chr3 61319359 61319391 -166205187 + (CAGG)n Simple_repeat Simple_repeat 4 35 0 2111 121 0 0 chr3 61320069 61320351 -166204227 + AluSx SINE Alu 22 303 -9 29 28 0 0 chr3 61322987 61323023 -166201555 + AT_rich Low_complexity Low_complexity 1 36 0 309 245 82 82 chr3 61323166 61323325 -166201253 - MIR3 SINE MIR -5 203 45 256 333 12 0 chr3 61323850 61323934 -166200644 + MIR SINE MIR 108 192 -70 28 0 0 0 chr3 61324348 61324376 -166200202 + AT_rich Low_complexity Low_complexity 1 28 0 321 309 103 0 chr3 61325341 61325467 -166199111 + L2 LINE L2 3134 3272 0 251 361 8 17 chr3 61325553 61325672 -166198906 + MIR SINE MIR 26 143 -65 364 241 102 19 chr3 61327524 61327632 -166196946 - MIR3 SINE MIR 0 208 92 570 240 127 48 chr3 61327728 61327957 -166196621 - MIR SINE MIR 0 262 16 598 216 75 122 chr3 61328894 61329149 -166195429 + MIR SINE MIR 20 262 0 228 86 0 0 chr3 61329572 61329607 -166194971 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 291 0 0 0 chr3 61329639 61329677 -166194901 - L1PA3 LINE L1 -3 6152 6115 2197 76 14 4 chr3 61329680 61329956 -166194622 - AluSp SINE Alu -34 279 1 285 29 0 0 chr3 61330114 61330148 -166194430 + (TTTA)n Simple_repeat Simple_repeat 1 34 0 1675 176 4 4 chr3 61330152 61330431 -166194147 - AluJo SINE Alu -33 279 1 1501 178 19 29 chr3 61330549 61330858 -166193720 - L1MB8 LINE L1 0 6178 5873 424 220 163 40 chr3 61331546 61331687 -166192891 + L1MC5 LINE L1 5614 5736 -2072 2097 128 0 0 chr3 61331687 61331977 -166192601 + AluSq SINE Alu 1 290 -23 424 220 163 40 chr3 61331977 61332112 -166192466 + L1MC5 LINE L1 5736 5924 -1884 2141 103 0 62 chr3 61332303 61332652 -166191926 + AluSx SINE Alu 1 312 0 1389 250 123 53 chr3 61332654 61333321 -166191257 + L1ME3A LINE L1 5167 5907 -263 2203 118 0 0 chr3 61333321 61333625 -166190953 + AluSg SINE Alu 1 304 -6 1389 250 123 53 chr3 61333625 61333688 -166190890 + L1ME3A LINE L1 5907 5964 -206 2048 209 117 118 chr3 61333909 61334272 -166190306 + L1MC5 LINE L1 6685 7047 -914 2106 111 6 29 chr3 61334272 61334587 -166189991 + AluSx SINE Alu 1 308 -4 2048 209 117 118 chr3 61334587 61335465 -166189113 + L1MC5 LINE L1 7047 7924 -37 1640 179 96 3 chr3 61335855 61336167 -166188411 - MER58B DNA MER1_type 0 341 1 242 250 38 0 chr3 61337734 61337814 -166186764 + (CAGAGA)n Simple_repeat Simple_repeat 2 84 0 180 262 204 0 chr3 61340816 61340919 -166183659 - MIR SINE MIR -59 203 80 201 258 38 83 chr3 61341518 61341577 -166183001 - L2 LINE L2 -217 3055 2995 1826 129 26 36 chr3 61341577 61341880 -166182698 + AluJo SINE Alu 1 300 -12 201 258 38 83 chr3 61341880 61341952 -166182626 - L2 LINE L2 -277 2995 2930 4993 229 64 22 chr3 61343205 61343722 -166180856 + L1MB8 LINE L1 3630 4124 -2022 189 74 0 0 chr3 61343722 61343749 -166180829 + (CATA)n Simple_repeat Simple_repeat 2 28 0 4993 229 64 22 chr3 61343749 61344704 -166179874 + L1MB8 LINE L1 4124 5164 -982 433 252 31 75 chr3 61345440 61345656 -166178922 + MIR SINE MIR 15 214 -48 273 225 247 0 chr3 61345892 61345981 -166178597 - MIR SINE MIR -27 235 125 1136 241 73 60 chr3 61346448 61346912 -166177666 + MLT1K LTR MaLR 83 552 -36 212 229 0 42 chr3 61346951 61346999 -166177579 + L2 LINE L2 3133 3178 -94 270 235 15 15 chr3 61348783 61348851 -166175727 - L2 LINE L2 -71 3201 3134 217 284 25 37 chr3 61349194 61349275 -166175303 + MIR SINE MIR 39 118 -90 2731 105 54 5 chr3 61349672 61350081 -166174497 + L1MA4 LINE L1 5865 6293 -7 585 246 51 93 chr3 61350489 61350602 -166173976 + MER3 DNA MER1_type 1 102 -107 1538 178 11 39 chr3 61350602 61350883 -166173695 - AluJo SINE Alu -39 273 1 585 246 51 93 chr3 61350883 61350984 -166173594 + MER3 DNA MER1_type 102 206 -3 270 331 93 26 chr3 61351165 61351316 -166173262 + MIR3 SINE MIR 34 194 -14 296 183 17 0 chr3 61351333 61351386 -166173192 + L1MB8 LINE L1 5147 5200 -946 1555 211 17 13 chr3 61351386 61351684 -166172894 + AluJo SINE Alu 1 299 -3 547 188 12 25 chr3 61351688 61351848 -166172730 + GA-rich Low_complexity Low_complexity 1 158 0 4580 158 62 25 chr3 61351848 61351950 -166172628 + L1MB8 LINE L1 5188 5285 -893 2164 125 0 0 chr3 61351950 61352245 -166172333 - AluSx SINE Alu -17 295 1 4580 158 62 25 chr3 61352245 61353085 -166171493 + L1MB8 LINE L1 5285 6163 -15 653 298 125 10 chr3 61353786 61354081 -166170497 - MARNA DNA Mariner -13 573 245 188 341 40 48 chr3 61354345 61354471 -166170107 - L2 LINE L2 -20 3293 3169 2463 94 0 0 chr3 61354947 61355254 -166169324 + AluSg SINE Alu 1 307 -3 189 271 0 43 chr3 61355700 61355770 -166168808 - MIR SINE MIR -122 86 20 201 321 89 0 chr3 61355883 61355995 -166168583 + MIR SINE MIR 104 225 -37 195 42 0 0 chr3 61356289 61356313 -166168265 + (GGGAA)n Simple_repeat Simple_repeat 5 28 0 343 268 68 68 chr3 61356585 61356775 -166167803 - MIR SINE MIR -52 210 21 271 211 53 13 chr3 61356914 61356990 -166167588 - MIR SINE MIR -74 188 110 327 331 87 0 chr3 61357145 61357272 -166167306 + MIR SINE MIR 51 188 -74 231 340 43 0 chr3 61357983 61358077 -166166501 + MIR SINE MIR 85 182 -80 193 236 169 11 chr3 61358156 61358245 -166166333 - MIR SINE MIR -110 152 50 569 269 27 21 chr3 61358464 61358650 -166165928 + MIR SINE MIR 6 192 -70 2991 150 75 54 chr3 61358665 61359087 -166165491 - MER7C DNA MER2_type -2426 602 163 1694 151 61 7 chr3 61359087 61359366 -166165212 - AluSx SINE Alu -18 294 1 2991 150 75 54 chr3 61359366 61359531 -166165047 - MER7C DNA MER2_type -2865 163 3 230 139 0 0 chr3 61359878 61359914 -166164664 - MADE1 DNA Mariner -44 36 1 675 287 69 40 chr3 61362017 61362400 -166162178 + L1MC4a LINE L1 5509 5808 -355 322 261 128 39 chr3 61362206 61362440 -166162138 + L1MB1 LINE L1 5695 5949 -240 * 181 167 71 0 chr3 61362769 61362811 -166161767 + L2 LINE L2 3264 3308 -5 1763 88 12 8 chr3 61364159 61364408 -166160170 + L1PA14 LINE L1 5912 6161 0 1235 64 13 0 chr3 61364421 61364577 -166160001 + L1PA10 LINE L1 6007 6164 -4 405 200 21 147 chr3 61364714 61364904 -166159674 + MLT1K LTR MaLR 422 587 -1 1683 197 0 29 chr3 61365087 61365402 -166159176 - AluJb SINE Alu -6 306 1 1111 163 0 26 chr3 61365627 61365817 -166158761 - AluJo SINE Alu -1 311 127 269 271 57 41 chr3 61366151 61366273 -166158305 - L2 LINE L2 0 3272 3149 180 284 0 75 chr3 61367195 61367262 -166157316 - L2 LINE L2 -11 3261 3200 2225 90 33 3 chr3 61367320 61367621 -166156957 + AluY SINE Alu 1 310 -1 23 0 0 0 chr3 61368024 61368047 -166156531 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 61368207 61368229 -166156349 + AT_rich Low_complexity Low_complexity 1 22 0 295 287 99 61 chr3 61369975 61370156 -166154422 - MIR3 SINE MIR 0 208 21 495 220 43 43 chr3 61370287 61370428 -166154150 + MER103 DNA DNA 20 160 -6 204 97 0 0 chr3 61370657 61370688 -166153890 + (A)n Simple_repeat Simple_repeat 1 31 0 1619 120 9 129 chr3 61372278 61372619 -166151959 - AluJb SINE Alu -12 300 1 207 0 0 0 chr3 61377540 61377563 -166147015 + (CAT)n Simple_repeat Simple_repeat 3 25 0 298 185 0 0 chr3 61377564 61377618 -166146960 - L2 LINE L2 -13 3259 3206 22 88 0 0 chr3 61377792 61377849 -166146729 + AT_rich Low_complexity Low_complexity 1 57 0 206 212 30 30 chr3 61377917 61378016 -166146562 + (CCCG)n Simple_repeat Simple_repeat 3 101 0 339 203 37 37 chr3 61378080 61378243 -166146335 + (CCGCG)n Simple_repeat Simple_repeat 2 164 0 2158 102 0 26 chr3 61379955 61380258 -166144320 - AluSx SINE Alu -17 295 1 1594 137 39 102 chr3 61380408 61380772 -166143806 + L1MC2 LINE L1 5993 6333 -11 707 184 25 44 chr3 61381124 61381282 -166143296 - FRAM SINE Alu -11 165 11 677 267 5 30 chr3 61381469 61381586 -166142992 - MIR SINE MIR -3 259 148 1919 138 41 0 chr3 61381586 61381876 -166142702 + AluSx SINE Alu 1 302 -10 677 267 5 30 chr3 61381876 61381960 -166142618 - MIR SINE MIR -114 148 63 641 196 11 138 chr3 61383393 61383582 -166140996 - FRAM SINE Alu -1 165 1 6302 160 77 11 chr3 61383584 61384803 -166139775 - Charlie1a DNA MER1_type -126 1329 31 328 180 27 77 chr3 61384805 61384945 -166139633 - MER53 DNA DNA 0 189 2 247 205 0 0 chr3 61384947 61384986 -166139592 - Charlie1a DNA MER1_type -1416 39 1 327 297 118 30 chr3 61385317 61385580 -166138998 - L3b LINE CR1 -192 1391 1106 208 239 134 0 chr3 61385664 61385726 -166138852 + MIR3 SINE MIR 123 193 -15 571 245 20 7 chr3 61385726 61385873 -166138705 + MIR SINE MIR 3 151 -111 1610 169 0 68 chr3 61388087 61388394 -166136184 + AluJo SINE Alu 1 286 -26 924 159 40 11 chr3 61388417 61388593 -166135985 + MER5A DNA MER1_type 4 184 -5 1786 167 0 17 chr3 61389708 61390007 -166134571 - AluJo SINE Alu -18 294 1 320 277 107 18 chr3 61390972 61391084 -166133494 - MER5B DNA MER1_type 0 178 57 349 271 73 57 chr3 61391118 61391211 -166133367 - MER5A DNA MER1_type -6 183 93 2477 62 0 13 chr3 61391211 61391518 -166133060 - AluY SINE Alu -8 303 1 2361 109 0 0 chr3 61391527 61391838 -166132740 - AluSx SINE Alu -1 311 1 349 271 73 57 chr3 61391838 61391911 -166132667 - MER5A DNA MER1_type -103 86 4 261 0 0 0 chr3 61392336 61392365 -166132213 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 225 382 13 57 chr3 61392465 61392622 -166131956 - MIR3 SINE MIR -15 193 44 2060 111 7 4 chr3 61392627 61392937 -166131641 - AluSx SINE Alu 0 311 1 211 320 0 64 chr3 61393959 61394084 -166130494 - MIR SINE MIR -89 173 57 2009 147 3 28 chr3 61394580 61394900 -166129678 - AluJo SINE Alu 0 312 1 7115 50 17 6 chr3 61395183 61396443 -166128135 + L1PA7 LINE L1 4881 6152 -2 2184 214 34 14 chr3 61396444 61397139 -166127439 + L1ME2 LINE L1 2048 2729 -3486 323 184 37 10 chr3 61397140 61397385 -166127193 + AluJo SINE Alu 1 302 0 542 187 24 16 chr3 61397429 61397552 -166127026 + L1ME2 LINE L1 2855 2978 -3237 1420 243 77 12 chr3 61398014 61398610 -166125968 + L1ME2 LINE L1 2921 3555 -2660 28453 76 14 6 chr3 61398625 61404736 -166119842 + L1PA6 LINE L1 11 6152 -2 1246 231 66 65 chr3 61404724 61404991 -166119587 + L1ME2 LINE L1 3543 3813 -2402 * 1501 188 13 40 chr3 61404991 61405150 -166119428 - AluJo SINE Alu -22 290 141 2586 71 3 0 chr3 61405150 61405458 -166119120 - AluY SINE Alu -2 309 1 1501 188 13 40 chr3 61405458 61405596 -166118982 - AluJo SINE Alu -171 141 1 1246 231 66 65 chr3 61405596 61405840 -166118738 + L1ME2 LINE L1 3813 4055 -2160 * 2069 180 27 22 chr3 61405836 61406199 -166118379 + L1ME2 LINE L1 5475 5842 -391 1971 135 0 23 chr3 61406199 61406503 -166118075 + AluJb SINE Alu 1 297 -15 2069 180 27 22 chr3 61406503 61406550 -166118028 + L1ME2 LINE L1 5842 5887 -346 643 188 94 39 chr3 61406704 61406885 -166117693 + L1ME2 LINE L1 5877 6067 -166 256 61 0 0 chr3 61406900 61406933 -166117645 + MER3 DNA MER1_type 17 49 -160 1405 279 127 47 chr3 61407088 61408065 -166116513 + HAL1 LINE L1 306 1360 -1147 462 262 71 21 chr3 61408082 61408223 -166116355 + MER91A DNA MER1_type 13 160 -36 3067 96 43 11 chr3 61408373 61408461 -166116117 + L1PB1 LINE L1 5695 5779 -372 237 33 0 0 chr3 61408461 61408491 -166116087 + (TA)n Simple_repeat Simple_repeat 2 31 0 3067 96 43 11 chr3 61408491 61408841 -166115737 + L1PB1 LINE L1 5779 6147 -4 2241 246 60 32 chr3 61408899 61409616 -166114962 + HAL1 LINE L1 1414 2150 -357 929 237 148 39 chr3 61409621 61410101 -166114477 + MLT1G LTR MaLR 1 555 0 296 279 122 53 chr3 61410119 61410396 -166114182 + HAL1 LINE L1 2082 2395 -112 744 113 148 9 chr3 61410396 61410511 -166114067 + FLAM_C SINE Alu 1 131 -2 296 279 122 53 chr3 61410511 61410627 -166113951 + HAL1 LINE L1 2395 2502 -5 362 320 74 11 chr3 61411233 61411408 -166113170 - MIR SINE MIR -51 211 26 1707 164 44 0 chr3 61411685 61411960 -166112618 + AluJb SINE Alu 1 287 -25 347 350 50 8 chr3 61412506 61412626 -166111952 - MIR3 SINE MIR -47 161 37 7768 39 5 3 chr3 61412754 61414019 -166110559 + L1PA5 LINE L1 4884 6149 -5 1506 160 55 0 chr3 61414847 61415085 -166109493 + AluSx SINE Alu 44 294 -18 1450 296 120 58 chr3 61415361 61416744 -166107834 + L2 LINE L2 737 2205 -1109 1650 249 19 78 chr3 61416746 61417281 -166107297 + MLT1J LTR MaLR 9 511 0 461 258 17 8 chr3 61417283 61417403 -166107175 + L2 LINE L2 2196 2316 -998 3704 334 63 21 chr3 61417403 61418367 -166106211 + ERVL LTR ERVL 2990 3912 -1852 2381 104 0 0 chr3 61418367 61418676 -166105902 + AluSx SINE Alu 1 309 -3 3704 334 63 21 chr3 61418676 61419604 -166104974 + ERVL LTR ERVL 3912 4962 -802 301 261 123 31 chr3 61420315 61420445 -166104133 + L2 LINE L2 3159 3300 -13 922 147 7 7 chr3 61420735 61420878 -166103700 + FRAM SINE Alu 4 146 -30 1616 117 36 0 chr3 61421299 61421521 -166103057 + MER30 DNA MER1_type 1 230 0 1783 181 30 0 chr3 61421540 61421843 -166102735 + AluJb SINE Alu 1 312 0 2519 57 0 0 chr3 61423478 61423774 -166100804 + AluY SINE Alu 1 296 -15 270 263 42 11 chr3 61423852 61423947 -166100631 - L1ME LINE L1 -417 5704 5607 180 0 0 0 chr3 61424147 61424167 -166100411 + (T)n Simple_repeat Simple_repeat 1 20 0 1049 162 0 17 chr3 61424366 61424545 -166100033 + AluJo SINE Alu 126 301 -11 306 302 48 16 chr3 61424732 61424858 -166099720 + HAL1 LINE L1 528 657 -1850 308 294 7 84 chr3 61424913 61425056 -166099522 + HAL1 LINE L1 657 788 -1719 2116 125 3 0 chr3 61425082 61425377 -166099201 + AluSx SINE Alu 1 296 -16 654 197 118 17 chr3 61425377 61425555 -166099023 - L2 LINE L2 -589 2725 2530 313 234 16 0 chr3 61425562 61425626 -166098952 + HAL1 LINE L1 799 863 -1644 201 74 0 0 chr3 61425691 61425718 -166098860 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 26485 85 2 9 chr3 61425789 61429384 -166095194 + L1P LINE L1 4 3572 -2574 379 185 15 0 chr3 61529792 61529857 -165994721 + MER2 DNA MER2_type 280 345 0 1050 185 170 75 chr3 61529871 61530260 -165994318 + MLT1K LTR MaLR 163 588 0 234 62 0 0 chr3 61530890 61530922 -165993656 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 435 296 48 16 chr3 61531294 61531483 -165993095 - MLT1K LTR MaLR -381 207 13 264 273 34 34 chr3 61531654 61531742 -165992836 - MLT1J2 LTR MaLR -2 448 361 760 225 11 37 chr3 61531839 61532026 -165992552 - MLT1J1 LTR MaLR -233 213 32 1799 125 67 17 chr3 61532055 61532352 -165992226 + AluSx SINE Alu 1 312 0 479 151 0 13 chr3 61532513 61532778 -165991800 + AluSx SINE Alu 1 307 -2 262 227 15 15 chr3 61532933 61532999 -165991579 - L1ME1 LINE L1 -10 6156 6091 447 287 171 14 chr3 61533250 61533466 -165991112 + MIR SINE MIR 13 262 0 2165 115 3 0 chr3 61535360 61535648 -165988930 - AluSx SINE Alu -23 289 1 220 213 0 21 chr3 61535746 61535840 -165988738 + (CAT)n Simple_repeat Simple_repeat 3 94 0 758 240 156 57 chr3 61537463 61537829 -165986749 - MLT1I LTR MaLR -5 404 3 22 0 0 0 chr3 61538069 61538091 -165986487 + AT_rich Low_complexity Low_complexity 1 22 0 327 206 31 131 chr3 61538817 61538977 -165985601 - L1ME4a LINE L1 -11 6110 5967 438 20 0 0 chr3 61538982 61539033 -165985545 + (TG)n Simple_repeat Simple_repeat 2 52 0 609 249 58 11 chr3 61539234 61539423 -165985155 - MLT1L LTR MaLR -9 606 409 264 317 126 53 chr3 61539811 61540208 -165984370 + L2 LINE L2 2842 3267 -5 2298 95 24 0 chr3 61540820 61541114 -165983464 + AluSx SINE Alu 1 301 -11 1002 59 0 22 chr3 61541210 61541346 -165983232 - L1PA5 LINE L1 0 6154 6022 388 276 87 32 chr3 61541393 61541578 -165983000 - L1ME4a LINE L1 -305 5816 5622 24 53 0 0 chr3 61542213 61542251 -165982327 + AT_rich Low_complexity Low_complexity 1 38 0 597 248 5 61 chr3 61542252 61542372 -165982206 - MIR SINE MIR -1 261 155 2365 105 0 6 chr3 61542372 61542686 -165981892 - AluSx SINE Alu 0 312 1 597 248 5 61 chr3 61542686 61542763 -165981815 - MIR SINE MIR -107 155 75 1081 239 65 80 chr3 61542810 61543274 -165981304 + LTR16A1 LTR ERVL 1 457 0 221 330 154 0 chr3 61543358 61543449 -165981129 + MIR3 SINE MIR 82 186 -22 292 266 97 16 chr3 61543791 61543915 -165980663 - L2 LINE L2 -1356 1958 1825 2452 84 0 0 chr3 61544310 61544606 -165979972 + AluSc SINE Alu 1 296 -13 347 338 1 1 chr3 61544683 61544810 -165979768 - MIR SINE MIR -62 146 30 336 24 0 0 chr3 61544884 61544925 -165979653 + (TG)n Simple_repeat Simple_repeat 1 41 0 436 307 73 28 chr3 61545747 61545926 -165978652 + MIR SINE MIR 76 262 0 403 281 67 7 chr3 61545973 61546108 -165978470 + MIR3 SINE MIR 20 162 -46 712 219 6 37 chr3 61547590 61547754 -165976824 - MER63B DNA MER1_type -1 434 276 607 154 27 16 chr3 61547755 61547903 -165976675 - 7SK RNA RNA 0 193 1 1018 205 153 0 chr3 61547903 61548157 -165976421 - MER63B DNA MER1_type -143 293 1 309 305 55 8 chr3 61548687 61548815 -165975763 - L2 LINE L2 0 3313 3180 394 220 34 25 chr3 61549356 61549474 -165975104 - MIR3 SINE MIR -7 201 83 1886 226 103 79 chr3 61549847 61549906 -165974672 + MER20B DNA MER1_type 1 57 -726 2316 101 3 0 chr3 61549906 61550202 -165974376 - AluSq SINE Alu -14 299 3 1886 226 103 79 chr3 61550202 61550853 -165973725 + MER20B DNA MER1_type 57 728 -55 256 266 16 0 chr3 61550949 61551013 -165973565 + L1MC4a LINE L1 5592 5656 -2152 1900 140 73 25 chr3 61551014 61551372 -165973206 - THE1C LTR MaLR 0 375 1 10578 114 29 8 chr3 61551372 61552919 -165971659 - THE1C-int LTR MaLR 0 1580 1 1809 137 81 27 chr3 61552919 61553254 -165971324 - THE1C LTR MaLR 0 375 23 980 249 102 47 chr3 61553262 61553677 -165970901 + L1MC4a LINE L1 5670 6061 -1747 183 80 0 0 chr3 61553677 61553702 -165970876 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 2289 73 0 4 chr3 61553708 61553982 -165970596 - AluSg SINE Alu -37 273 1 980 249 102 47 chr3 61553982 61554032 -165970546 + L1MC4a LINE L1 6065 6168 -1640 226 215 0 108 chr3 61554162 61554255 -165970323 - MER5A DNA MER1_type -72 117 35 449 316 17 11 chr3 61554317 61554494 -165970084 + MIR SINE MIR 23 200 -62 688 289 96 17 chr3 61554611 61555204 -165969374 + L2 LINE L2 2553 3195 -118 1992 134 3 0 chr3 61555945 61556228 -165968350 + AluJb SINE Alu 1 284 -28 2220 112 0 7 chr3 61557563 61557857 -165966721 + AluSx SINE Alu 1 292 -20 242 268 0 10 chr3 61558551 61558648 -165965930 + GA-rich Low_complexity Low_complexity 3 98 0 1433 294 74 22 chr3 61559028 61559857 -165964721 + HAL1b LINE L1 53 924 -424 189 0 0 0 chr3 61560099 61560120 -165964458 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 1177 150 10 30 chr3 61560206 61560406 -165964172 - AluJb SINE Alu -15 297 102 629 295 76 53 chr3 61560421 61561153 -165963425 + L1M4 LINE L1 2181 3032 -3114 563 276 30 30 chr3 61561312 61561576 -165963002 + L1M4 LINE L1 3682 3945 -2201 23 0 0 0 chr3 61561630 61561653 -165962925 + AT_rich Low_complexity Low_complexity 1 23 0 34 0 0 0 chr3 61561897 61561931 -165962647 + AT_rich Low_complexity Low_complexity 1 34 0 260 282 104 81 chr3 61562222 61562878 -165961700 + L1P LINE L1 4033 4703 -1443 2268 171 40 60 chr3 61562952 61563421 -165961157 + LTR42 LTR ERVL 25 484 -11 1562 172 3 56 chr3 61564000 61564302 -165960276 + AluJb SINE Alu 4 289 -23 2287 129 0 18 chr3 61564697 61565039 -165959539 - MER1B DNA MER1_type 0 337 2 5320 218 87 52 chr3 61565126 61565170 -165959408 + L1M4 LINE L1 3303 3344 -2802 2271 109 0 10 chr3 61565170 61565483 -165959095 + AluSg SINE Alu 1 310 0 5320 218 87 52 chr3 61565483 61565569 -165959009 + L1M4 LINE L1 3344 3426 -2720 2500 87 0 0 chr3 61565569 61565878 -165958700 + AluSg SINE Alu 1 309 -1 5320 218 87 52 chr3 61565878 61566834 -165957744 + L1M4 LINE L1 3426 4347 -1799 2065 145 119 33 chr3 61566834 61566875 -165957703 - MSTA LTR MaLR 0 428 392 2452 71 0 0 chr3 61566875 61567169 -165957409 + AluY SINE Alu 1 294 -17 2065 145 119 33 chr3 61567169 61567521 -165957057 - MSTA LTR MaLR -36 392 1 5320 218 87 52 chr3 61567521 61568462 -165956116 + L1M4 LINE L1 4347 5403 -743 2087 123 0 32 chr3 61569150 61569460 -165955118 - AluSx SINE Alu -12 300 1 466 310 5 46 chr3 61570736 61570952 -165953626 - MIR SINE MIR -29 233 27 223 318 80 0 chr3 61571001 61571089 -165953489 - L2 LINE L2 -260 3012 2918 2388 55 7 3 chr3 61572111 61572403 -165952175 + AluY SINE Alu 1 293 -18 1687 137 115 0 chr3 61572417 61572695 -165951883 + AluJo SINE Alu 1 310 -2 1953 135 55 0 chr3 61572698 61572987 -165951591 + AluSx SINE Alu 1 305 -7 371 308 77 16 chr3 61573960 61574142 -165950436 + MIR SINE MIR 20 212 -50 462 255 50 0 chr3 61574197 61574338 -165950240 + L2 LINE L2 3164 3311 -2 1887 164 76 30 chr3 61574366 61574762 -165949816 + MLT2D LTR ERVL 1 414 0 194 259 0 0 chr3 61574956 61575010 -165949568 - MIR SINE MIR -128 134 81 503 274 243 14 chr3 61575014 61575310 -165949268 + MLT1H LTR MaLR 9 372 -177 242 267 17 0 chr3 61576661 61576721 -165947857 + GA-rich Low_complexity Low_complexity 3 63 0 610 253 159 0 chr3 61576725 61576907 -165947671 - MIR SINE MIR -15 247 37 417 231 125 0 chr3 61577225 61577329 -165947249 - L2 LINE L2 0 3313 3197 24 0 0 0 chr3 61577514 61577538 -165947040 + AT_rich Low_complexity Low_complexity 1 24 0 2332 53 7 4 chr3 61577824 61578133 -165946445 + AluY SINE Alu 1 310 0 1188 134 6 0 chr3 61579169 61579341 -165945237 - MER2 DNA MER2_type -172 173 1 726 272 94 38 chr3 61579420 61579846 -165944732 - MLT1J2 LTR MaLR 0 450 1 187 293 0 0 chr3 61579916 61579974 -165944604 - MIR3 SINE MIR -20 188 131 283 295 98 16 chr3 61580133 61580255 -165944323 + MIR SINE MIR 3 134 -128 347 198 149 41 chr3 61582133 61582254 -165942324 + MIR SINE MIR 16 149 -59 325 266 217 7 chr3 61582781 61582924 -165941654 + L2 LINE L2 2874 3046 -267 235 284 202 9 chr3 61583053 61583162 -165941416 + L2 LINE L2 3183 3312 -1 254 345 21 7 chr3 61583264 61583409 -165941169 - L3b LINE CR1 -332 1251 1105 370 293 58 23 chr3 61583539 61583713 -165940865 + MIR SINE MIR 70 249 -13 332 287 9 17 chr3 61584422 61584537 -165940041 + L1MC4a LINE L1 5782 5895 -1913 1789 164 0 7 chr3 61584967 61585253 -165939325 + AluJo SINE Alu 5 288 -24 1681 256 93 14 chr3 61585331 61585824 -165938754 + MLT1E LTR MaLR 60 591 -2 379 78 0 0 chr3 61585836 61585887 -165938691 + MADE1 DNA Mariner 30 80 0 552 282 150 0 chr3 61585901 61586121 -165938457 + MIR SINE MIR 4 256 -6 458 250 181 20 chr3 61587944 61588148 -165936430 + MIR SINE MIR 18 254 -8 1681 179 6 16 chr3 61588219 61588531 -165936047 - AluJo SINE Alu -3 309 1 23 0 0 0 chr3 61588564 61588587 -165935991 + AT_rich Low_complexity Low_complexity 1 23 0 1789 82 44 118 chr3 61588596 61588962 -165935616 - L1MA5A LINE L1 -5 6292 5954 1236 118 104 57 chr3 61588969 61589180 -165935398 - AluSq SINE Alu -89 224 4 504 80 27 0 chr3 61589183 61589258 -165935320 - L1MA5A LINE L1 -327 5970 5894 232 224 17 0 chr3 61589362 61589420 -165935158 + MIR SINE MIR 126 184 -78 875 259 65 43 chr3 61590012 61590364 -165934214 + LTR10B LTR ERV1 188 547 0 1226 206 28 118 chr3 61590364 61590786 -165933792 + HERVI LTR ERV1 2 385 -7400 1308 258 32 10 chr3 61591972 61592527 -165932051 + HERVI LTR ERV1 418 1023 -6762 418 180 324 18 chr3 61592553 61592664 -165931914 + HERVI LTR ERV1 926 1070 -5579 794 253 28 6 chr3 61592664 61592842 -165931736 + HERVI LTR ERV1 1545 1726 -6059 281 286 67 9 chr3 61592843 61592875 -165931703 + HERVI LTR ERV1 1222 1251 -7375 2400 69 0 38 chr3 61592875 61593192 -165931386 + AluY SINE Alu 2 306 -5 281 286 67 9 chr3 61593192 61593264 -165931314 + HERVI LTR ERV1 1251 1332 -7294 * 2357 279 26 8 chr3 61593258 61593908 -165930670 + HERVI LTR ERV1 1728 2389 -5396 * 5106 275 14 24 chr3 61593875 61595280 -165929298 + HERVI LTR ERV1 4565 5956 -1829 6124 238 31 10 chr3 61595435 61597033 -165927545 + HERVI LTR ERV1 5040 7784 0 847 249 68 48 chr3 61597108 61597445 -165927133 + LTR10B LTR ERV1 188 531 -16 1615 163 153 10 chr3 61597548 61597855 -165926723 + MSTA LTR MaLR 70 420 -8 1696 100 0 0 chr3 61597855 61598084 -165926494 - L1PA12 LINE L1 -260 5908 5680 2220 123 0 0 chr3 61598084 61598385 -165926193 - AluSq SINE Alu -12 301 1 243 209 209 0 chr3 61599391 61599458 -165925120 + FLAM SINE Alu 44 124 -9 296 294 34 34 chr3 61599473 61599592 -165924986 - LTR16B LTR ERVL -264 200 82 234 346 47 0 chr3 61600680 61600807 -165923771 - MIR SINE MIR -74 188 56 219 158 59 129 chr3 61600902 61601003 -165923575 + MER5B DNA MER1_type 75 168 -10 1004 259 99 80 chr3 61601239 61601792 -165922786 + MLT1K LTR MaLR 25 588 0 263 242 0 15 chr3 61601864 61601930 -165922648 - L2 LINE L2 -3 3269 3205 266 308 44 0 chr3 61602105 61602196 -165922382 + L2 LINE L2 3175 3269 -3 228 67 0 0 chr3 61602610 61602640 -165921938 + (CA)n Simple_repeat Simple_repeat 1 30 0 949 240 100 65 chr3 61602676 61603022 -165921556 - L1ME4a LINE L1 -246 5875 5514 207 100 0 0 chr3 61603022 61603052 -165921526 + (T)n Simple_repeat Simple_repeat 1 30 0 415 335 118 0 chr3 61603889 61604101 -165920477 + MIR SINE MIR 20 256 -6 235 279 135 0 chr3 61604115 61604226 -165920352 + MIR SINE MIR 131 256 -6 1648 152 41 11 chr3 61604256 61604526 -165920052 + AluJo SINE Alu 1 278 -34 2109 112 3 53 chr3 61604580 61604902 -165919676 - AluSx SINE Alu -6 306 1 233 271 65 56 chr3 61606258 61606365 -165918213 - L2 LINE L2 -18 3295 3188 279 105 0 0 chr3 61606832 61606870 -165917708 - MER65A LTR ERV1 0 445 408 439 82 96 0 chr3 61606876 61606949 -165917629 + MER65A LTR ERV1 366 445 0 246 62 0 0 chr3 61606950 61606982 -165917596 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 2331 63 0 21 chr3 61608881 61609214 -165915364 + AluY SINE Alu 6 332 0 2258 211 86 30 chr3 61609847 61609971 -165914607 + MLT1E2 LTR MaLR 1 117 -509 2100 74 96 0 chr3 61609971 61610241 -165914337 + AluSc SINE Alu 1 296 -13 2258 211 86 30 chr3 61610241 61610709 -165913869 + MLT1E2 LTR MaLR 117 626 0 2572 57 0 0 chr3 61610900 61611201 -165913377 - AluY SINE Alu -10 301 1 469 317 45 31 chr3 61613586 61613810 -165910768 + MLT1K LTR MaLR 10 236 -352 1089 91 23 0 chr3 61614439 61614615 -165909963 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 577 123 19 9 chr3 61614617 61614723 -165909855 + CT-rich Low_complexity Low_complexity 1 107 0 911 201 6 0 chr3 61614723 61614887 -165909691 - FRAM SINE Alu -1 165 1 557 228 63 33 chr3 61615175 61615450 -165909128 + L1MC5 LINE L1 7547 7774 -187 772 189 8 0 chr3 61615622 61615754 -165908824 - FLAM_A SINE Alu 0 133 1 285 233 241 23 chr3 61616110 61616243 -165908335 - L1ME4a LINE L1 -16 6105 5944 704 200 56 17 chr3 61616438 61616452 -165908126 - AluJo SINE Alu -7 305 293 3872 135 19 47 chr3 61616452 61617180 -165907398 - L1MA6 LINE L1 0 6300 5593 704 200 56 17 chr3 61617180 61617345 -165907233 - AluJo SINE Alu -19 293 119 322 51 6 0 chr3 61617361 61617411 -165907167 - L1M4 LINE L1 -2166 3980 3929 22 0 0 0 chr3 61617415 61617437 -165907141 + AT_rich Low_complexity Low_complexity 1 22 0 2624 220 77 33 chr3 61617692 61618416 -165906162 - L1ME2 LINE L1 -6 6158 5403 21 0 0 0 chr3 61620101 61620122 -165904456 + GC_rich Low_complexity Low_complexity 1 21 0 236 241 157 0 chr3 61621178 61621261 -165903317 + Zaphod DNA AcHobo 3935 4030 -1 244 300 106 55 chr3 61622611 61622884 -165901694 - L3 LINE CR1 -2 1575 1289 260 257 40 0 chr3 61622888 61622962 -165901616 + MLT1L LTR MaLR 507 583 -32 373 355 33 5 chr3 61623283 61623494 -165901084 - L3 LINE CR1 -718 859 643 410 344 6 6 chr3 61624196 61624457 -165900121 + (CCA)n Simple_repeat Simple_repeat 1 261 0 241 250 79 0 chr3 61624510 61624586 -165899992 + MIR SINE MIR 35 116 -92 324 0 0 0 chr3 61624805 61624841 -165899737 + (TG)n Simple_repeat Simple_repeat 2 37 0 1950 154 0 14 chr3 61624841 61625134 -165899444 - AluJo SINE Alu -23 289 1 1493 89 39 0 chr3 61625554 61625779 -165898799 - AluSc SINE Alu 0 301 69 400 222 127 40 chr3 61627028 61627154 -165897424 - MIR SINE MIR -18 244 108 2493 63 0 3 chr3 61628231 61628532 -165896046 + AluSc SINE Alu 1 300 -9 332 274 29 0 chr3 61628717 61628819 -165895759 - L1ME LINE L1 -623 5498 5394 1957 157 16 0 chr3 61629779 61630085 -165894493 - AluJo SINE Alu -1 311 1 678 295 68 56 chr3 61630616 61631197 -165893381 - L2 LINE L2 -9 3304 2710 1120 186 10 0 chr3 61631340 61631544 -165893034 + AluJb SINE Alu 94 299 -13 2635 209 88 43 chr3 61631556 61632362 -165892216 - L1MB4 LINE L1 -56 6124 5273 819 157 0 15 chr3 61632362 61632496 -165892082 - FLAM_C SINE Alu 0 133 2 2635 209 88 43 chr3 61632496 61632511 -165892067 - L1MB4 LINE L1 -907 5273 5260 2413 175 10 0 chr3 61633122 61633510 -165891068 + MER47B DNA MER2_type 27 418 0 339 311 98 37 chr3 61633762 61634006 -165890572 - MLT1J2 LTR MaLR -223 227 5 542 305 43 23 chr3 61634125 61634381 -165890197 + MIR SINE MIR 1 261 -1 230 176 20 20 chr3 61634814 61634865 -165889713 + CT-rich Low_complexity Low_complexity 2 52 0 189 0 0 0 chr3 61635206 61635227 -165889351 + (TTG)n Simple_repeat Simple_repeat 2 22 0 3256 114 21 14 chr3 61635703 61636187 -165888391 + LTR45B LTR ERV1 3 489 0 345 335 29 45 chr3 61636243 61636483 -165888095 - MIR SINE MIR -19 243 11 1553 142 4 0 chr3 61637345 61637577 -165887001 + AluJb SINE Alu 69 301 -11 1114 232 11 29 chr3 61637711 61637987 -165886591 + L1MC4 LINE L1 5413 5683 -2125 994 204 57 11 chr3 61637977 61638257 -165886321 + L1MC5 LINE L1 7509 7801 -160 * 396 283 76 60 chr3 61638503 61638818 -165885760 - L1MC4a LINE L1 -1872 5936 5617 1937 129 161 8 chr3 61638957 61639345 -165885233 + MSTA LTR MaLR 1 428 0 1942 146 7 3 chr3 61639930 61640217 -165884361 - AluSx SINE Alu -24 288 1 2269 110 3 10 chr3 61640228 61640537 -165884041 - AluSq SINE Alu -6 307 1 210 363 81 8 chr3 61640572 61640696 -165883882 + L2 LINE L2 3180 3312 -1 3238 189 80 89 chr3 61641735 61642772 -165881806 + L1MC4 LINE L1 6820 7847 -195 1672 160 29 73 chr3 61642777 61643068 -165881510 - MLT1A1 LTR MaLR 0 365 63 6130 84 14 93 chr3 61643068 61643104 -165881474 - L1PA11 LINE L1 0 6174 6137 2425 133 8 3 chr3 61643104 61643466 -165881112 + THE1B LTR MaLR 1 364 0 6130 84 14 93 chr3 61643466 61644077 -165880501 - L1PA11 LINE L1 -37 6137 5583 261 0 0 0 chr3 61644077 61644106 -165880472 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6130 84 14 93 chr3 61644106 61644576 -165880002 - L1PA11 LINE L1 -591 5583 5077 1672 160 29 73 chr3 61644576 61644666 -165879912 - MLT1A1 LTR MaLR -302 63 1 460 236 107 28 chr3 61644669 61644847 -165879731 + L1MC4 LINE L1 7851 8042 0 254 275 0 14 chr3 61645208 61645277 -165879301 + L2 LINE L2 3136 3203 -69 582 192 80 26 chr3 61645285 61645436 -165879142 - MER45A DNA AcHobo -19 159 1 207 246 18 0 chr3 61645437 61645494 -165879084 + L2 LINE L2 3215 3272 0 221 387 32 0 chr3 61646415 61646508 -165878070 + MIR SINE MIR 36 131 -131 196 280 53 116 chr3 61646673 61646898 -165877680 + L2 LINE L2 3044 3254 -18 507 216 22 30 chr3 61647008 61647142 -165877436 + FLAM_C SINE Alu 1 133 0 21 57 0 0 chr3 61647396 61647431 -165877147 + AT_rich Low_complexity Low_complexity 1 35 0 824 199 0 7 chr3 61647638 61647784 -165876794 + FRAM SINE Alu 17 161 -15 260 297 76 8 chr3 61649059 61649177 -165875401 + L1ME4a LINE L1 5725 5850 -271 1791 156 13 25 chr3 61649304 61649619 -165874959 + AluJo SINE Alu 2 312 0 398 337 12 0 chr3 61649623 61649786 -165874792 + MER103 DNA DNA 1 165 -1 293 237 95 41 chr3 61649828 61649997 -165874581 + L1ME4a LINE L1 5942 6119 -2 1955 134 38 29 chr3 61650229 61650542 -165874036 - THE1B LTR MaLR -48 316 1 342 175 107 68 chr3 61650598 61650701 -165873877 - L1MB5 LINE L1 -9 6165 6059 207 204 23 0 chr3 61651166 61651210 -165873368 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 2137 116 3 3 chr3 61651792 61652084 -165872494 + AluSx SINE Alu 1 292 -20 376 167 26 13 chr3 61652660 61652738 -165871840 + MER116 DNA Mariner 1 79 -1 259 163 291 81 chr3 61652991 61653077 -165871501 + MER81 DNA DNA 1 104 -10 406 196 31 10 chr3 61653173 61653270 -165871308 - MER103 DNA DNA -66 100 2 224 248 181 45 chr3 61653911 61654044 -165870534 - MER5A DNA MER1_type -16 173 23 629 202 139 67 chr3 61654063 61654271 -165870307 - MER58A DNA MER1_type -1 223 1 2255 65 3 3 chr3 61654576 61654867 -165869711 - AluY SINE Alu -20 291 1 22 35 0 0 chr3 61656666 61656695 -165867883 + GC_rich Low_complexity Low_complexity 1 29 0 286 320 0 0 chr3 61657603 61657681 -165866897 + C-rich Low_complexity Low_complexity 1 78 0 26 50 0 0 chr3 61657826 61657866 -165866712 + GC_rich Low_complexity Low_complexity 1 40 0 288 0 0 0 chr3 61660354 61660386 -165864192 + (CA)n Simple_repeat Simple_repeat 2 33 0 607 209 90 8 chr3 61665170 61665304 -165859274 - MER45A DNA AcHobo 0 178 34 565 283 0 0 chr3 61665621 61665773 -165858805 - MIR SINE MIR -26 236 85 230 186 58 70 chr3 61665828 61665914 -165858664 + MIR SINE MIR 108 192 -70 561 250 90 35 chr3 61665967 61666167 -165858411 + MIR SINE MIR 21 231 -31 490 336 65 9 chr3 61667872 61668104 -165856474 + MIR SINE MIR 17 261 -1 395 231 47 107 chr3 61668319 61668518 -165856060 - MIR SINE MIR -32 176 25 280 303 184 0 chr3 61668982 61669134 -165855444 + MIR SINE MIR 77 256 -6 588 294 11 11 chr3 61671848 61672028 -165852550 - MER5A DNA MER1_type -9 180 1 594 234 65 0 chr3 61672675 61672829 -165851749 + MER112 DNA MER1_type 1 164 -96 210 150 0 0 chr3 61672861 61672901 -165851677 + (CTACT)n Simple_repeat Simple_repeat 3 42 0 532 313 49 25 chr3 61673081 61673324 -165851254 - MIR SINE MIR 0 262 14 257 224 306 0 chr3 61673796 61673894 -165850684 - MIR SINE MIR -75 187 60 180 324 49 0 chr3 61674101 61674203 -165850375 + MIR3 SINE MIR 15 121 -87 436 259 166 36 chr3 61675057 61675250 -165849328 + MIR SINE MIR 33 250 -12 386 301 0 10 chr3 61675701 61675804 -165848774 + MIR SINE MIR 14 115 -147 225 302 36 50 chr3 61675834 61675973 -165848605 + L2 LINE L2 3177 3313 0 182 209 23 23 chr3 61675997 61676040 -165848538 - MIR SINE MIR -65 143 101 270 136 0 0 chr3 61676172 61676216 -165848362 + (TG)n Simple_repeat Simple_repeat 1 44 0 355 323 70 70 chr3 61676943 61677256 -165847322 - L2 LINE L2 0 3272 2960 258 32 0 0 chr3 61677694 61677725 -165846853 + (ATG)n Simple_repeat Simple_repeat 2 32 0 830 315 12 16 chr3 61677727 61677981 -165846597 - MIR SINE MIR -7 255 3 318 216 75 110 chr3 61678492 61678601 -165845977 - L1ME4a LINE L1 -11 6110 6012 2296 94 0 0 chr3 61678601 61678909 -165845669 - AluY SINE Alu -3 308 1 318 216 75 110 chr3 61678909 61679026 -165845552 - L1ME4a LINE L1 -109 6012 5892 357 330 58 29 chr3 61679230 61679539 -165845039 - L1ME4a LINE L1 -197 5924 5607 838 262 76 9 chr3 61679721 61679946 -165844632 + MIR SINE MIR 8 247 -15 511 233 96 38 chr3 61680880 61681172 -165843406 - L1MEd LINE L1 -4914 1205 897 266 313 115 26 chr3 61682244 61682436 -165842142 + MIR SINE MIR 33 241 -21 197 159 23 0 chr3 61682559 61682603 -165841975 + CT-rich Low_complexity Low_complexity 3 47 0 718 249 151 0 chr3 61682616 61682841 -165841737 + MIR SINE MIR 4 262 0 1977 112 30 0 chr3 61682909 61683205 -165841373 - AluSg SINE Alu -5 305 1 2199 109 7 0 chr3 61683803 61684105 -165840473 + AluSx SINE Alu 1 304 -8 1091 276 55 39 chr3 61684301 61684376 -165840202 - MER115 DNA AcHobo -238 455 383 288 0 0 0 chr3 61684376 61684408 -165840170 + (CA)n Simple_repeat Simple_repeat 1 32 0 1091 276 55 39 chr3 61684408 61684748 -165839830 - MER115 DNA AcHobo -310 383 33 700 175 12 0 chr3 61684988 61685148 -165839430 + CT-rich Low_complexity Low_complexity 1 162 0 188 209 0 47 chr3 61685679 61685722 -165838856 + MIR SINE MIR 222 262 0 539 194 0 8 chr3 61685931 61686060 -165838518 + (TGGA)n Simple_repeat Simple_repeat 3 130 0 773 192 4 0 chr3 61686072 61686313 -165838265 + (TGGA)n Simple_repeat Simple_repeat 1 242 0 607 222 6 6 chr3 61686340 61686520 -165838058 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 191 175 123 123 chr3 61687508 61687622 -165836956 + L2 LINE L2 3200 3313 0 233 264 92 11 chr3 61688253 61688340 -165836238 + MIR SINE MIR 78 141 -67 287 259 0 0 chr3 61688553 61688607 -165835971 - L2 LINE L2 -2 3270 3217 754 269 90 9 chr3 61689346 61689569 -165835009 - MIR SINE MIR -4 258 18 729 219 65 32 chr3 61690019 61690266 -165834312 + MER113 DNA MER1_type? 80 334 -187 342 276 48 70 chr3 61690293 61690638 -165833940 - MLT1I LTR MaLR -7 402 71 245 284 0 37 chr3 61690933 61691014 -165833564 + Tigger3(Golem) DNA MER2_type 1013 1090 -1939 1271 269 26 3 chr3 61691235 61691547 -165833031 - LTR16C LTR ERVL -19 472 154 1108 218 245 19 chr3 61691633 61692073 -165832505 + MLT1F LTR MaLR 3 533 -9 1639 148 62 88 chr3 61692083 61692483 -165832095 - MLT1B LTR MaLR 0 390 1 2161 92 3 13 chr3 61692617 61692933 -165831645 + AluSp SINE Alu 1 313 0 198 71 0 0 chr3 61692940 61692968 -165831610 + (A)n Simple_repeat Simple_repeat 1 28 0 543 267 67 11 chr3 61693940 61694120 -165830458 + MLT1I LTR MaLR 1 190 -219 229 287 99 40 chr3 61694651 61694752 -165829826 - L2 LINE L2 -8 3305 3199 759 152 134 110 chr3 61694897 61695233 -165829345 - MER69 DNA AcHobo -22 2504 2161 411 244 17 59 chr3 61695234 61695325 -165829253 + MER5B DNA MER1_type 10 97 -81 2056 102 0 3 chr3 61695325 61695635 -165828943 + AluSx SINE Alu 1 309 0 411 244 17 59 chr3 61695635 61695661 -165828917 + MER5B DNA MER1_type 97 123 -55 1530 187 18 12 chr3 61695672 61696004 -165828574 - MER69 DNA AcHobo -353 2173 1840 1023 251 92 0 chr3 61696299 61696614 -165827964 - MER69 DNA AcHobo -882 344 1 256 246 29 0 chr3 61697214 61697283 -165827295 - L2 LINE L2 -2 3270 3200 1191 259 144 28 chr3 61697284 61697720 -165826858 - MLT1G1 LTR MaLR 0 595 109 180 354 46 0 chr3 61697787 61697852 -165826726 - L2 LINE L2 -80 3192 3125 807 283 255 9 chr3 61697856 61698294 -165826284 - L2 LINE L2 -9 3304 2761 255 157 137 0 chr3 61698313 61698364 -165826214 - MLT1I LTR MaLR -17 392 335 756 281 29 10 chr3 61698450 61698689 -165825889 - MLT1I LTR MaLR -93 316 75 224 305 17 0 chr3 61698755 61698814 -165825764 - L2 LINE L2 -562 2752 2693 247 229 29 0 chr3 61699118 61699188 -165825390 + MIR SINE MIR 59 130 -132 409 293 0 71 chr3 61699329 61699469 -165825109 + MIR3 SINE MIR 38 167 -41 252 217 61 104 chr3 61699525 61699640 -165824938 - MER20 DNA MER1_type -109 110 1 952 151 11 89 chr3 61699844 61700129 -165824449 + AluJo SINE Alu 1 312 0 23 0 0 0 chr3 61700848 61700871 -165823707 + AT_rich Low_complexity Low_complexity 1 23 0 272 286 0 109 chr3 61702000 61702192 -165822386 + L3 LINE CR1 1403 1573 -4 193 283 50 0 chr3 61702518 61702578 -165822000 + L2 LINE L2 3251 3313 0 241 265 0 20 chr3 61703811 61703860 -165820718 - L2 LINE L2 -88 3184 3137 207 0 0 0 chr3 61703860 61703883 -165820695 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 561 192 0 0 chr3 61703950 61704075 -165820503 + (TG)n Simple_repeat Simple_repeat 1 125 0 270 250 42 42 chr3 61704076 61704172 -165820406 - L2 LINE L2 -213 3100 3005 2095 112 0 7 chr3 61704207 61704510 -165820068 + AluSx SINE Alu 1 301 -11 243 173 0 0 chr3 61704899 61704951 -165819627 + CT-rich Low_complexity Low_complexity 2 53 0 198 0 0 0 chr3 61705438 61705460 -165819118 + (T)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chr3 61705825 61705860 -165818718 + AT_rich Low_complexity Low_complexity 1 35 0 10226 54 95 1 chr3 61709260 61710620 -165813958 - L1P LINE L1 -4080 2066 580 376 291 47 35 chr3 61710848 61711020 -165813558 + Charlie8 DNA MER1_type 92 265 -2152 1274 196 43 4 chr3 61711127 61711382 -165813196 + L1M4 LINE L1 4729 4993 -1153 2067 78 14 7 chr3 61711382 61711675 -165812903 + AluSq SINE Alu 1 295 -18 535 204 0 0 chr3 61711690 61711778 -165812800 + AluJ/FLAM SINE Alu 2 89 -223 256 347 68 57 chr3 61712052 61712228 -165812350 + L3 LINE CR1 298 475 -1102 232 250 28 28 chr3 61712675 61712783 -165811795 + C-rich Low_complexity Low_complexity 5 112 0 1824 161 0 3 chr3 61713661 61713978 -165810600 - L1PA13 LINE L1 -6 6157 5842 331 176 7 61 chr3 61714027 61714175 -165810403 + CT-rich Low_complexity Low_complexity 3 142 0 23 0 0 0 chr3 61715648 61715671 -165808907 + AT_rich Low_complexity Low_complexity 1 23 0 1264 88 0 6 chr3 61715855 61716025 -165808553 + AluY SINE Alu 134 302 -9 954 127 55 50 chr3 61716028 61716209 -165808369 - LTR29 LTR ERV1 -64 558 377 343 123 0 18 chr3 61719402 61719459 -165805119 - MER58A DNA MER1_type 0 224 169 450 213 78 14 chr3 61719471 61719612 -165804966 + MER53 DNA DNA 1 150 -39 354 209 118 9 chr3 61719738 61719848 -165804730 - L1M4 LINE L1 -1370 4776 4655 1816 192 0 33 chr3 61719857 61720217 -165804361 - L1PA5 LINE L1 0 6154 5807 260 272 0 66 chr3 61720219 61720355 -165804223 + T-rich Low_complexity Low_complexity 4 130 0 845 133 23 58 chr3 61720746 61720919 -165803659 - FRAM SINE Alu 0 176 10 3672 50 0 0 chr3 61721825 61722268 -165802310 + L1PA3 LINE L1 5387 5829 -326 393 151 209 0 chr3 61773425 61773511 -165751067 + U6 snRNA snRNA 1 104 -3 229 182 18 18 chr3 61773752 61773807 -165750771 + LTR66 LTR ERVL 385 439 -171 2014 136 0 7 chr3 61774534 61774835 -165749743 - AluSx SINE Alu -13 299 1 901 164 105 0 chr3 61774938 61775109 -165749469 - MER5A DNA MER1_type 0 189 1 406 195 31 78 chr3 61775131 61775259 -165749319 - MIR SINE MIR -66 142 21 189 0 0 0 chr3 61776508 61776529 -165748049 + (T)n Simple_repeat Simple_repeat 1 21 0 2115 121 0 0 chr3 61777186 61777468 -165747110 + AluSx SINE Alu 1 282 -30 300 53 0 0 chr3 61777468 61777506 -165747072 + (TAAG)n Simple_repeat Simple_repeat 2 39 0 416 296 131 29 chr3 61777844 61778265 -165746313 - LTR33 LTR ERVL -33 488 5 239 240 0 0 chr3 61778722 61778772 -165745806 - MLT1K LTR MaLR -8 580 531 2782 215 104 26 chr3 61778774 61778857 -165745721 + L1MC4 LINE L1 7023 7098 -944 2056 106 34 3 chr3 61778857 61779149 -165745429 + AluSq SINE Alu 1 301 -12 2782 215 104 26 chr3 61779149 61779808 -165744770 + L1MC4 LINE L1 7098 7823 -219 1973 164 0 0 chr3 61781334 61781644 -165742934 - AluSx SINE Alu -2 310 1 6182 213 76 16 chr3 61782744 61784151 -165740427 + L1M2a LINE L1 1 1492 -5676 43677 32 22 3 chr3 61784161 61790194 -165734384 - L1HS LINE L1 0 6155 4 11286 209 29 31 chr3 61790194 61792949 -165731629 + L1M2a LINE L1 1483 4243 -2924 1595 182 25 3 chr3 61792949 61793227 -165731351 + AluJb SINE Alu 1 287 -25 438 20 0 0 chr3 61793227 61793278 -165731300 + (CA)n Simple_repeat Simple_repeat 2 52 0 11286 209 29 31 chr3 61793285 61794945 -165729633 + L1M2a LINE L1 4243 5586 -1581 389 81 16 0 chr3 61794945 61795007 -165729571 + (CTATA)n Simple_repeat Simple_repeat 1 63 0 11286 209 29 31 chr3 61795007 61795250 -165729328 + L1M2a LINE L1 5586 5828 -1339 23 0 0 0 chr3 61795848 61795871 -165728707 + AT_rich Low_complexity Low_complexity 1 23 0 257 376 20 10 chr3 61796022 61796123 -165728455 - L2 LINE L2 -23 3249 3148 2245 105 23 0 chr3 61796632 61796936 -165727642 - AluSx SINE Alu -1 311 1 293 345 71 20 chr3 61797800 61797962 -165726616 + MIR SINE MIR 16 184 -58 1942 121 21 7 chr3 61798531 61798820 -165725758 - L1MA1 LINE L1 0 6302 6010 255 240 13 40 chr3 61799010 61799085 -165725493 + MIR SINE MIR 22 94 -168 245 202 173 58 chr3 61799694 61799798 -165724780 - L3 LINE CR1 -314 1263 1148 246 301 35 52 chr3 61800691 61800864 -165723714 - L2 LINE L2 -148 3165 2996 * 939 297 165 11 chr3 61800862 61801475 -165723103 - L2 LINE L2 -471 2843 2137 274 342 149 0 chr3 61802762 61802876 -165721702 + L2 LINE L2 3140 3270 -2 4733 162 55 19 chr3 61803020 61803879 -165720699 + L1MC2 LINE L1 5444 6333 -11 296 254 14 0 chr3 61804089 61804160 -165720418 + MIR SINE MIR 82 153 -109 362 237 70 77 chr3 61805262 61805418 -165719160 - MER103 DNA DNA -1 165 11 837 182 188 21 chr3 61805689 61805881 -165718697 + MER58A DNA MER1_type 1 224 0 182 200 141 82 chr3 61807335 61807420 -165717158 + MIR SINE MIR 85 174 -88 1315 251 16 9 chr3 61807728 61808043 -165716535 - MLT1E3 LTR MaLR -21 603 287 531 210 14 35 chr3 61808090 61808233 -165716345 - MLT1E3 LTR MaLR -514 140 1 223 348 56 0 chr3 61808234 61808323 -165716255 - MIR SINE MIR -115 147 54 307 286 76 0 chr3 61808436 61808555 -165716023 + MER5C DNA MER1_type 1 128 -196 2189 102 3 3 chr3 61808557 61808840 -165715738 + AluSc SINE Alu 1 283 -26 204 294 0 0 chr3 61811102 61811153 -165713425 + CT-rich Low_complexity Low_complexity 2 52 0 2105 114 7 0 chr3 61811224 61811529 -165713049 + AluSx SINE Alu 1 307 0 326 309 68 59 chr3 61811594 61811934 -165712644 - L2 LINE L2 0 3272 2930 781 142 25 0 chr3 61813849 61813969 -165710609 + FLAM_C SINE Alu 19 141 -2 249 227 0 25 chr3 61814082 61814201 -165710377 + GA-rich Low_complexity Low_complexity 1 116 0 2447 90 0 0 chr3 61814334 61814645 -165709933 - AluY SINE Alu 0 311 1 207 0 0 0 chr3 61814860 61814883 -165709695 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1770 161 0 0 chr3 61815685 61815964 -165708614 + AluJb SINE Alu 24 302 -10 2271 81 0 3 chr3 61815994 61816309 -165708269 - AluSx SINE Alu 0 314 1 2222 75 58 0 chr3 61818067 61818359 -165706219 - AluY SINE Alu -2 309 1 420 275 88 38 chr3 61818994 61819154 -165705424 - L2 LINE L2 -214 3058 2891 2159 138 27 15 chr3 61820325 61820658 -165703920 + MER1B DNA MER1_type 1 337 0 341 293 86 43 chr3 61821090 61821230 -165703348 + MIR SINE MIR 21 166 -96 338 254 36 85 chr3 61822256 61822421 -165702157 - MIR SINE MIR -1 261 105 520 260 98 77 chr3 61822876 61823369 -165701209 + L2 LINE L2 2497 3064 -249 393 315 63 112 chr3 61823447 61823904 -165700674 - L2 LINE L2 -10 3262 2828 1074 248 75 16 chr3 61826709 61827027 -165697551 - MER46C DNA MER2_type 0 338 2 586 328 10 14 chr3 61827433 61827726 -165696852 + Tigger1 DNA MER2_type 2125 2416 -2 641 244 42 33 chr3 61827957 61828170 -165696408 - L1ME2 LINE L1 -136 6028 5814 488 236 18 36 chr3 61828158 61828323 -165696255 - L1M4c LINE L1 -3104 3853 3692 * 1486 260 113 42 chr3 61828317 61829375 -165695203 - L1M4c LINE L1 -3593 3364 2382 369 58 0 0 chr3 61829375 61829427 -165695151 + (TA)n Simple_repeat Simple_repeat 2 53 0 1486 260 113 42 chr3 61829427 61829974 -165694604 - L1M4c LINE L1 -4575 2382 1343 557 298 62 18 chr3 61831591 61831816 -165692762 - MIR SINE MIR 0 262 28 201 323 108 8 chr3 61832109 61832239 -165692339 + L2 LINE L2 2667 2809 -505 249 268 0 0 chr3 61832352 61832408 -165692170 + L2 LINE L2 3167 3222 -91 206 161 0 0 chr3 61833370 61833401 -165691177 + MIR SINE MIR 73 103 -105 228 35 0 0 chr3 61833755 61833784 -165690794 + (TG)n Simple_repeat Simple_repeat 1 29 0 1659 180 0 4 chr3 61833803 61834070 -165690508 - AluJb SINE Alu -46 266 1 184 338 27 14 chr3 61834604 61834678 -165689900 + MIR SINE MIR 32 106 -156 250 269 208 15 chr3 61834878 61835008 -165689570 + L2 LINE L2 3116 3270 -2 2341 102 0 0 chr3 61835753 61836048 -165688530 - AluSx SINE Alu -17 295 1 243 0 0 0 chr3 61836057 61836084 -165688494 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2043 106 0 7 chr3 61836086 61836361 -165688217 - AluSc SINE Alu -31 278 6 433 292 7 21 chr3 61836637 61836781 -165687797 - MIR SINE MIR -73 189 48 414 259 132 44 chr3 61838469 61838641 -165685937 + L1MC4a LINE L1 5283 5438 -726 219 69 0 0 chr3 61838641 61838670 -165685908 + (ATG)n Simple_repeat Simple_repeat 2 30 0 414 259 132 44 chr3 61838670 61839101 -165685477 + L1MC4a LINE L1 5438 5681 -483 213 286 14 0 chr3 61839409 61839479 -165685099 + L2 LINE L2 3175 3245 -27 385 276 10 0 chr3 61839773 61839871 -165684707 + MER45 DNA AcHobo 4 102 -76 941 157 41 23 chr3 61839871 61840043 -165684535 - AluJ SINE Alu -9 303 129 281 122 0 0 chr3 61840093 61840134 -165684444 - AluJ SINE Alu -180 122 82 * 491 139 14 0 chr3 61840132 61840204 -165684374 + MER45 DNA AcHobo 1509 1581 0 2107 102 3 7 chr3 61841030 61841338 -165683240 + AluSq SINE Alu 1 307 0 225 270 40 33 chr3 61841338 61841449 -165683129 + MIR SINE MIR 36 149 -59 206 233 17 0 chr3 61843020 61843080 -165681498 + CT-rich Low_complexity Low_complexity 4 64 0 396 103 0 0 chr3 61843613 61843671 -165680907 - MER53 DNA DNA -130 59 2 195 235 10 128 chr3 61843800 61843902 -165680676 - MIR SINE MIR -152 110 21 211 140 0 53 chr3 61845401 61845458 -165679120 + (TTTC)n Simple_repeat Simple_repeat 3 56 0 2694 120 9 63 chr3 61846864 61847104 -165677474 - Tigger2a DNA MER2_type -2274 434 229 2072 118 34 0 chr3 61847104 61847400 -165677178 + AluSg SINE Alu 1 306 -4 2694 120 9 63 chr3 61847400 61847618 -165676960 - Tigger2a DNA MER2_type -2479 229 1 1893 134 27 3 chr3 61847662 61847954 -165676624 - AluSx SINE Alu -13 299 1 24 0 0 0 chr3 61848304 61848328 -165676250 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr3 61849019 61849055 -165675523 + AT_rich Low_complexity Low_complexity 1 36 0 273 333 39 39 chr3 61849262 61849418 -165675160 + L2 LINE L2 3158 3313 0 930 319 52 11 chr3 61849572 61849954 -165674624 + L1MDa LINE L1 16 413 -6127 378 331 61 53 chr3 61849981 61850242 -165674336 + L1MDa LINE L1 409 993 -5547 3638 159 8 5 chr3 61850540 61851126 -165673452 - LTR69 LTR ERVL 0 588 1 2203 196 81 71 chr3 61851250 61852209 -165672369 + L1MDa LINE L1 644 1586 -4954 * 6054 53 1 1 chr3 61852207 61852947 -165671631 + L1PA8 LINE L1 5374 6113 -59 574 200 58 32 chr3 61852959 61853114 -165671464 + L1MDa LINE L1 2199 2357 -4183 264 30 0 0 chr3 61855356 61855389 -165669189 + (TG)n Simple_repeat Simple_repeat 1 33 0 7920 38 2 9 chr3 61856536 61857725 -165666853 - L1PA4 LINE L1 -2 6153 4968 232 150 25 0 chr3 61857782 61857822 -165666756 - L2 LINE L2 -8 3264 3224 786 158 0 31 chr3 61858029 61858156 -165666422 - FLAM_A SINE Alu -10 123 1 667 296 49 57 chr3 61858269 61858657 -165665921 + MLT1J LTR MaLR 109 493 -18 213 259 176 38 chr3 61859027 61859158 -165665420 + MIR SINE MIR 107 255 -7 362 248 41 16 chr3 61860402 61860523 -165664055 + LTR67 LTR ERVL 434 557 0 274 258 155 93 chr3 61861222 61861416 -165663162 - Charlie8 DNA MER1_type -2184 233 28 414 0 0 0 chr3 61861604 61861650 -165662928 + (CA)n Simple_repeat Simple_repeat 2 47 0 195 240 107 67 chr3 61861949 61862024 -165662554 + L2 LINE L2 3201 3278 -35 502 264 154 34 chr3 61864023 61864315 -165660263 - MLT1K LTR MaLR -27 561 235 21 0 0 0 chr3 61865512 61865533 -165659045 + AT_rich Low_complexity Low_complexity 1 21 0 2552 108 78 10 chr3 61865561 61865961 -165658617 + MSTA LTR MaLR 1 427 -1 488 222 0 20 chr3 61866196 61866295 -165658283 - MLT1C LTR MaLR 0 467 371 381 183 14 0 chr3 61866293 61866364 -165658214 - MLT1B LTR MaLR -318 72 1 * 540 162 63 9 chr3 61866368 61866479 -165658099 - MLT1C-int LTR MaLR -4 1367 1251 1913 124 45 33 chr3 61866479 61866845 -165657733 + MSTB1 LTR MaLR 1 396 0 1961 213 39 14 chr3 61866861 61867274 -165657304 - MLT1C-int LTR MaLR -98 1273 851 1376 96 0 35 chr3 61867290 61867487 -165657091 - AluSc SINE Alu -2 307 118 2350 210 44 63 chr3 61867487 61868142 -165656436 - MLT1C-int LTR MaLR -562 809 225 2519 140 20 0 chr3 61868142 61868499 -165656079 - THE1B LTR MaLR 0 364 1 2350 210 44 63 chr3 61868499 61868720 -165655858 - MLT1C-int LTR MaLR -1146 225 1 1838 183 33 82 chr3 61868720 61869032 -165655546 - MLT1C LTR MaLR 0 467 186 1528 221 0 16 chr3 61869032 61869349 -165655229 - AluJo SINE Alu 0 312 1 1838 183 33 82 chr3 61869349 61869527 -165655051 - MLT1C LTR MaLR -281 186 1 830 311 133 26 chr3 61869566 61870064 -165654514 - MLT1K LTR MaLR -17 571 21 180 257 100 29 chr3 61870078 61870148 -165654430 + MIR3 SINE MIR 127 201 -7 884 221 18 31 chr3 61870263 61870489 -165654089 - L1ME1 LINE L1 -5 6161 5939 6263 142 33 8 chr3 61870509 61871903 -165652675 - L1MA5 LINE L1 -2 6298 4873 3930 191 11 24 chr3 61872022 61873289 -165651289 - L1 LINE L1 -3436 3352 2105 44794 38 2 2 chr3 61873298 61879449 -165645129 - L1PA3 LINE L1 0 6155 6 1650 164 36 67 chr3 61879432 61879852 -165644726 - L1 LINE L1 -4651 2138 1732 * 1390 89 51 0 chr3 61879878 61880092 -165644486 + Tigger7 DNA MER2_type 2267 2491 0 482 59 132 0 chr3 61880192 61880260 -165644318 - MADE1 DNA Mariner -2 78 2 1126 215 197 44 chr3 61880264 61880783 -165643795 - MLT1E2 LTR MaLR 0 626 1 317 203 1 112 chr3 61881962 61882091 -165642487 + MIR SINE MIR 37 151 -62 2650 153 22 2 chr3 61882092 61882544 -165642034 + L1MA6 LINE L1 5830 6290 -10 18514 132 20 95 chr3 61882668 61886432 -165638146 + L1PA7 LINE L1 12 3492 -2654 14174 91 0 15 chr3 61886534 61889245 -165635333 + L1PA7 LINE L1 3448 6146 -8 255 319 11 0 chr3 61889324 61889418 -165635160 + GA-rich Low_complexity Low_complexity 3 97 0 5542 131 35 77 chr3 61890369 61890502 -165634076 - L1MA9 LINE L1 -1 6311 6174 414 0 0 0 chr3 61890502 61890548 -165634030 + (TG)n Simple_repeat Simple_repeat 1 46 0 5542 131 35 77 chr3 61890548 61891553 -165633025 - L1MA9 LINE L1 -138 6174 5221 310 289 21 49 chr3 61891933 61892075 -165632503 - MIR SINE MIR -92 170 33 231 352 50 33 chr3 61892121 61892422 -165632156 + L2 LINE L2 2344 2649 -665 751 263 123 19 chr3 61892647 61892955 -165631623 - MER113 DNA MER1_type? -122 399 60 517 151 47 0 chr3 61892976 61893062 -165631516 + Tigger7 DNA MER2_type 32 121 -584 2341 87 0 0 chr3 61893062 61893350 -165631228 + AluY SINE Alu 1 288 -23 483 147 0 0 chr3 61893350 61893452 -165631126 + (TA)n Simple_repeat Simple_repeat 1 102 0 898 186 142 0 chr3 61893452 61893635 -165630943 + Tigger7 DNA MER2_type 114 322 -2165 405 120 26 51 chr3 61893629 61893746 -165630832 + Tigger7 DNA MER2_type 2297 2410 -77 * 411 164 15 0 chr3 61893746 61893813 -165630765 + THE1C LTR MaLR 1 68 -307 773 136 0 0 chr3 61893944 61894054 -165630524 + FLAM_C SINE Alu 32 141 -2 310 241 46 37 chr3 61894644 61894752 -165629826 - MIR3 SINE MIR -7 201 93 807 256 126 23 chr3 61896473 61896821 -165627757 - MLT1J2 LTR MaLR 0 450 67 218 32 32 0 chr3 61896903 61896934 -165627644 + (TGAA)n Simple_repeat Simple_repeat 2 33 0 251 326 6 24 chr3 61897838 61897967 -165626611 + MIR SINE MIR 52 176 -32 2204 111 0 10 chr3 61898698 61898996 -165625582 - AluSg SINE Alu -15 295 1 247 224 0 82 chr3 61899516 61899614 -165624964 - MER3 DNA MER1_type -118 91 2 466 286 281 12 chr3 61899648 61899989 -165624589 - L2 LINE L2 -253 3060 2624 464 337 54 57 chr3 61900345 61901001 -165623577 - L2 LINE L2 -3 3269 2618 227 283 62 26 chr3 61901173 61901286 -165623292 - MIR SINE MIR -27 235 119 207 318 34 11 chr3 61901561 61901649 -165622929 + L3 LINE CR1 240 329 -1248 211 125 0 0 chr3 61902658 61902690 -165621888 - MIR SINE MIR -117 145 114 325 161 0 0 chr3 61902731 61902787 -165621791 + MLT2B3 LTR ERVL 497 552 -2 464 239 9 9 chr3 61903111 61903224 -165621354 - MER5B DNA MER1_type -3 175 63 1232 173 22 31 chr3 61903296 61903521 -165621057 + MER58A DNA MER1_type 1 223 -1 264 284 64 0 chr3 61903590 61903699 -165620879 - MER117 DNA MER1_type -77 120 5 304 136 0 123 chr3 61904385 61904466 -165620112 - MER103 DNA DNA -79 87 17 377 160 33 113 chr3 61904640 61904743 -165619835 + Charlie7 DNA MER1_type 2467 2556 -56 2210 121 3 0 chr3 61904743 61905048 -165619530 - AluSx SINE Alu -6 306 1 377 160 33 113 chr3 61905048 61905094 -165619484 + Charlie7 DNA MER1_type 2556 2604 -8 791 215 107 29 chr3 61905409 61905614 -165618964 + MER58A DNA MER1_type 4 224 0 1929 124 40 53 chr3 61906334 61906714 -165617864 - THE1C LTR MaLR 0 375 1 6595 243 53 34 chr3 61907017 61907138 -165617440 - L1ME2 LINE L1 0 6164 6047 2057 138 0 3 chr3 61907138 61907429 -165617149 + AluSx SINE Alu 1 290 -22 6595 243 53 34 chr3 61907429 61910799 -165613779 - L1ME2 LINE L1 -117 6047 2616 955 259 60 0 chr3 61910799 61911015 -165613563 + MER68 LTR ERV1 240 468 -94 3187 240 36 36 chr3 61911020 61912184 -165612394 - L1MCa LINE L1 -2936 3490 2327 520 108 32 0 chr3 61912184 61912277 -165612301 + CT-rich Low_complexity Low_complexity 4 99 0 3186 207 135 26 chr3 61912279 61912516 -165612062 - L1MCa LINE L1 -4189 2418 2208 1027 199 40 123 chr3 61912516 61912914 -165611664 - MLT1A1 LTR MaLR 0 365 1 3186 207 135 26 chr3 61912914 61913088 -165611490 - L1MCa LINE L1 -4399 2208 2054 1860 144 0 51 chr3 61913088 61913400 -165611178 - AluJb SINE Alu -16 296 1 3186 207 135 26 chr3 61913400 61914138 -165610440 - L1MCa LINE L1 -4553 2054 1040 2717 175 47 44 chr3 61914760 61915395 -165609183 - L1MB8 LINE L1 0 6178 5542 343 227 11 0 chr3 61915502 61915590 -165608988 - L1MB8 LINE L1 0 6178 6090 4433 179 336 22 chr3 61915942 61917620 -165606958 - L1MB8 LINE L1 -1246 4900 2696 331 268 112 78 chr3 61918349 61918528 -165606050 + MIR3 SINE MIR 16 200 -8 * 386 260 50 114 chr3 61918524 61918743 -165605835 - L2 LINE L2 -4 3309 3105 671 179 179 19 chr3 61918918 61919130 -165605448 + LTR54B LTR ERV1 56 301 -197 1745 145 27 0 chr3 61919287 61919549 -165605029 - AluSx SINE Alu -43 269 1 230 288 18 68 chr3 61920135 61920298 -165604280 - MLT1K LTR MaLR -33 555 401 588 280 202 0 chr3 61920437 61920680 -165603898 + L2 LINE L2 2983 3274 -39 713 146 0 133 chr3 61920688 61920846 -165603732 + MER2 DNA MER2_type 1 137 -208 1969 113 10 30 chr3 61920846 61921148 -165603430 - AluSx SINE Alu -16 296 1 776 175 105 0 chr3 61921251 61921422 -165603156 - MER5A DNA MER1_type 0 189 1 369 217 18 55 chr3 61921444 61921570 -165603008 - MIR SINE MIR -66 142 21 290 324 56 0 chr3 61972810 61972918 -165551660 + L2 LINE L2 3155 3268 -4 2290 98 6 55 chr3 61973849 61974210 -165550368 + AluSx SINE Alu 1 345 0 382 143 0 16 chr3 61975179 61975242 -165549336 - MER116 DNA Mariner -7 73 12 1875 161 0 13 chr3 61977045 61977349 -165547229 - AluJo SINE Alu -8 304 5 280 246 55 36 chr3 61977358 61977468 -165547110 + MER5A DNA MER1_type 56 167 -22 865 164 5 119 chr3 61977964 61978061 -165546517 - MER45A DNA AcHobo -1403 178 114 2502 82 0 9 chr3 61978061 61978376 -165546202 + AluSx SINE Alu 1 312 0 865 164 5 119 chr3 61978376 61978479 -165546099 - MER45A DNA AcHobo -1467 114 1 2631 111 3 19 chr3 61978871 61979241 -165545337 - THE1B LTR MaLR 0 364 1 291 307 59 0 chr3 61982024 61982125 -165542453 - L2 LINE L2 -21 3251 3145 421 335 105 26 chr3 61982128 61982480 -165542098 - MLT1K LTR MaLR 0 588 209 841 202 25 25 chr3 61982861 61983059 -165541519 + MER3 DNA MER1_type 11 208 -1 409 248 107 0 chr3 61983239 61983360 -165541218 + L2 LINE L2 3180 3313 0 1997 133 14 0 chr3 61984892 61985178 -165539400 - AluSg SINE Alu -20 290 1 22 56 0 0 chr3 61985778 61985814 -165538764 + AT_rich Low_complexity Low_complexity 1 36 0 225 250 0 19 chr3 61987663 61987715 -165536863 + (ATG)n Simple_repeat Simple_repeat 3 53 0 255 310 21 41 chr3 61987845 61987990 -165536588 - MIR SINE MIR -79 183 42 2693 124 17 67 chr3 61988029 61988660 -165535918 - MER4E LTR ERV1 0 766 1 351 0 0 0 chr3 61988795 61988834 -165535744 + (TG)n Simple_repeat Simple_repeat 1 39 0 346 291 101 22 chr3 61988916 61989095 -165535483 + MIR SINE MIR 8 200 -62 478 200 43 9 chr3 61989429 61989544 -165535034 + L2 LINE L2 3193 3311 -2 218 302 31 10 chr3 61989539 61989635 -165534943 - MIR SINE MIR 0 262 165 * 1811 161 3 22 chr3 61993927 61994243 -165530335 + AluJo SINE Alu 1 310 -2 348 248 114 22 chr3 61994876 61995037 -165529541 - MIR SINE MIR -62 200 16 332 285 0 0 chr3 61996138 61996229 -165528349 - MIR SINE MIR -88 120 30 413 289 94 82 chr3 61996425 61996743 -165527835 - MLT1L LTR MaLR -86 524 104 400 231 56 27 chr3 61997225 61997353 -165527225 + MIR SINE MIR 34 155 -53 230 206 103 29 chr3 61999464 61999532 -165525046 + L2 LINE L2 3157 3229 -43 227 182 73 18 chr3 61999888 61999943 -165524635 + MER4D LTR ERV1 337 394 -509 567 243 141 73 chr3 62000572 62000681 -165523897 + L1MD1 LINE L1 2 102 -6438 1367 102 37 81 chr3 62000681 62000927 -165523651 - MER46A DNA MER2_type -1 235 1 567 243 141 73 chr3 62000927 62001187 -165523391 + L1MD1 LINE L1 102 396 -6144 8821 213 63 54 chr3 62001247 62002673 -165521905 + L1MD1 LINE L1 954 2366 -4270 2591 106 17 3 chr3 62002673 62003032 -165521546 - THE1B LTR MaLR 0 364 1 8821 213 63 54 chr3 62003032 62003157 -165521421 + L1MD1 LINE L1 2366 2488 -4148 2340 95 3 7 chr3 62003157 62003461 -165521117 + AluSc SINE Alu 1 303 -6 8821 213 63 54 chr3 62003461 62004449 -165520129 + L1MD1 LINE L1 2488 3466 -3170 2229 108 3 16 chr3 62004449 62004765 -165519813 + AluSx SINE Alu 1 312 0 8821 213 63 54 chr3 62004765 62007773 -165516805 + L1MD1 LINE L1 3466 6447 -189 239 0 32 0 chr3 62007773 62007804 -165516774 + (TTA)n Simple_repeat Simple_repeat 2 33 0 763 154 0 0 chr3 62007808 62007925 -165516653 - FLAM_C SINE Alu -16 117 1 8821 213 63 54 chr3 62007925 62007993 -165516585 + L1MD1 LINE L1 6449 6636 0 180 0 0 0 chr3 62008746 62008766 -165515812 + (T)n Simple_repeat Simple_repeat 1 20 0 222 192 0 0 chr3 62010569 62010621 -165513957 + GA-rich Low_complexity Low_complexity 5 56 0 22 0 0 0 chr3 62010776 62010798 -165513780 + AT_rich Low_complexity Low_complexity 1 22 0 287 219 115 109 chr3 62012185 62012377 -165512201 - L1ME LINE L1 -318 5803 5611 381 252 46 30 chr3 62012423 62012554 -165512024 - L2 LINE L2 -3 3269 3137 841 300 28 54 chr3 62012629 62013092 -165511486 + L2 LINE L2 2291 2741 -573 1787 194 103 23 chr3 62013115 62013543 -165511035 - MLT1C LTR MaLR -5 462 1 238 248 47 98 chr3 62013706 62013940 -165510638 + L2 LINE L2 3011 3232 -81 21 0 0 0 chr3 62014375 62014396 -165510182 + AT_rich Low_complexity Low_complexity 1 21 0 614 319 61 0 chr3 62014555 62014850 -165509728 - L2 LINE L2 -615 2699 2387 818 115 0 16 chr3 62015547 62015669 -165508909 - AluSg/x SINE Alu -7 303 184 1964 213 166 45 chr3 62015746 62016574 -165508004 + L1MD1 LINE L1 5432 6320 -24 287 303 183 17 chr3 62016624 62016799 -165507779 - MIR SINE MIR -45 217 14 1603 229 42 16 chr3 62017244 62017624 -165506954 + MLT1B LTR MaLR 1 390 0 406 235 17 34 chr3 62017865 62017984 -165506594 + MER103 DNA DNA 2 118 -48 2026 174 86 19 chr3 62018085 62018515 -165506063 - MLT1C LTR MaLR -8 459 1 2245 114 3 19 chr3 62018844 62019160 -165505418 - AluSq SINE Alu -2 311 1 257 283 117 17 chr3 62022233 62022353 -165502225 + L2 LINE L2 3141 3272 0 567 225 17 52 chr3 62022903 62023076 -165501502 + L1MC5 LINE L1 6739 6905 -1056 1458 256 88 21 chr3 62023218 62023527 -165501051 + L1MC5 LINE L1 6968 7255 -706 209 83 28 0 chr3 62023527 62023563 -165501015 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1458 256 88 21 chr3 62023563 62023820 -165500758 + L1MC5 LINE L1 7255 7572 -389 339 158 0 0 chr3 62023857 62023914 -165500664 + L1MC5 LINE L1 7727 7783 -178 1880 224 36 75 chr3 62023919 62023974 -165500604 - MLT1F LTR MaLR 0 542 486 1777 154 3 102 chr3 62023974 62024345 -165500233 + MER1B DNA MER1_type 1 334 -3 1880 224 36 75 chr3 62024345 62024851 -165499727 - MLT1F LTR MaLR -56 486 3 433 260 87 40 chr3 62024957 62025107 -165499471 + MIR SINE MIR 32 188 -74 359 304 29 14 chr3 62025626 62025764 -165498814 + MLT1K LTR MaLR 125 264 -324 280 163 51 82 chr3 62025800 62025898 -165498680 + MER53 DNA DNA 3 97 -92 * 289 154 218 39 chr3 62025860 62025938 -165498640 - MER53 DNA DNA -96 93 2 297 359 0 0 chr3 62026292 62026395 -165498183 - MIR SINE MIR 0 262 160 263 303 40 0 chr3 62026461 62026560 -165498018 + L1ME LINE L1 5669 5771 -350 228 67 0 0 chr3 62026576 62026606 -165497972 + (TA)n Simple_repeat Simple_repeat 2 31 0 342 0 0 0 chr3 62026607 62026645 -165497933 + (CA)n Simple_repeat Simple_repeat 1 38 0 1139 229 84 4 chr3 62028637 62028886 -165495692 - MER45B DNA AcHobo -771 269 1 353 250 81 16 chr3 62029033 62029157 -165495421 + MIR SINE MIR 103 234 -28 351 309 26 0 chr3 62030372 62030500 -165494078 - MIR SINE MIR -62 146 30 2410 92 0 0 chr3 62030502 62030806 -165493772 - AluY SINE Alu -7 304 1 601 290 126 35 chr3 62031335 62031808 -165492770 - MLT1K LTR MaLR -41 547 4 1004 167 9 42 chr3 62031897 62032113 -165492465 + MER3 DNA MER1_type 1 209 0 2535 49 0 13 chr3 62032572 62032876 -165491702 + AluY SINE Alu 1 300 -11 288 77 0 0 chr3 62034916 62034955 -165489623 + (A)n Simple_repeat Simple_repeat 1 39 0 2327 87 20 0 chr3 62036182 62036482 -165488096 + AluY SINE Alu 1 306 -5 688 287 119 20 chr3 62036581 62036884 -165487694 - L2 LINE L2 -426 2888 2556 658 271 92 27 chr3 62036884 62037146 -165487432 - LTR33A LTR ERVL -17 506 228 203 331 142 15 chr3 62037450 62037598 -165486980 - MIR3 SINE MIR -64 144 2 469 310 39 0 chr3 62038232 62038361 -165486217 - MER45A DNA AcHobo -44 134 1 439 211 0 0 chr3 62038718 62038808 -165485770 - MER103 DNA DNA -43 123 34 2170 96 0 7 chr3 62039151 62039433 -165485145 + AluSx SINE Alu 1 280 -32 297 0 0 0 chr3 62039435 62039468 -165485110 + (CA)n Simple_repeat Simple_repeat 2 34 0 189 107 0 0 chr3 62039761 62039789 -165484789 + (CA)n Simple_repeat Simple_repeat 2 29 0 1532 207 56 41 chr3 62040710 62041133 -165483445 - MER110A LTR ERV1 -14 477 62 336 162 88 0 chr3 62041267 62041335 -165483243 - MER96 DNA MER1_type? 0 175 102 821 222 74 28 chr3 62041492 62041625 -165482953 + MIR SINE MIR 21 169 -93 1957 147 61 15 chr3 62041625 62041952 -165482626 - MER61A LTR ERV1 -1 342 1 821 222 74 28 chr3 62041952 62042034 -165482544 + MIR SINE MIR 169 246 -16 215 194 0 0 chr3 62042231 62042267 -165482311 + (TCCA)n Simple_repeat Simple_repeat 1 36 0 603 251 122 27 chr3 62042449 62042712 -165481866 + L2 LINE L2 2902 3189 -124 3508 62 0 7 chr3 62042715 62043166 -165481412 - LTR7 LTR ERV1 -2 448 1 2422 88 64 13 chr3 62043166 62043539 -165481039 - HERVH LTR ERV1 0 7713 7322 1485 110 18 9 chr3 62043537 62043755 -165480823 - HERVH LTR ERV1 -1894 5819 5600 * 4217 151 12 1 chr3 62043756 62044411 -165480167 - HERVH LTR ERV1 -2564 5149 4488 3468 108 4 6 chr3 62044405 62044907 -165479671 - HERVH LTR ERV1 -3713 4000 3500 * 914 130 20 0 chr3 62044910 62045056 -165479522 - HERVH LTR ERV1 -4425 3288 3140 * 20057 95 33 14 chr3 62045050 62047982 -165476596 - HERVH LTR ERV1 -4726 2987 1 3483 58 0 9 chr3 62047984 62048436 -165476142 - LTR7 LTR ERV1 -2 448 1 5495 136 22 16 chr3 62049282 62050169 -165474409 - MER4D LTR ERV1 -8 895 3 263 293 18 15 chr3 62051101 62051210 -165473368 + MER5A DNA MER1_type 30 153 -36 635 204 167 0 chr3 62052909 62053071 -165471507 - MER5A DNA MER1_type 0 189 1 420 285 39 48 chr3 62053179 62053256 -165471322 + Charlie8 DNA MER1_type 30 106 -235 2194 129 56 6 chr3 62053256 62053612 -165470966 - THE1C LTR MaLR 0 375 2 420 285 39 48 chr3 62053612 62053785 -165470793 + Charlie8 DNA MER1_type 106 290 -51 486 212 197 5 chr3 62054139 62054330 -165470248 + MLT1E LTR MaLR 1 229 -425 1062 76 0 0 chr3 62054335 62054480 -165470098 + (TTCC)n Simple_repeat Simple_repeat 4 148 0 4245 86 25 20 chr3 62054495 62055099 -165469479 - L1PA11 LINE L1 -21 6153 5547 1714 206 31 18 chr3 62055099 62055528 -165469050 + MLT1E LTR MaLR 218 593 0 296 231 296 32 chr3 62055559 62055790 -165468788 - MLT1H1 LTR MaLR -3 530 253 1394 209 104 0 chr3 62056382 62056689 -165467889 + MER58B DNA MER1_type 2 340 -1 2192 185 9 14 chr3 62056847 62057275 -165467303 - MSTB LTR MaLR 0 426 1 1738 180 29 40 chr3 62057679 62058057 -165466521 - MLT1A2 LTR MaLR 0 374 1 2115 123 0 16 chr3 62058418 62058598 -165465980 - AluSx SINE Alu 0 312 138 2009 144 0 10 chr3 62058598 62058896 -165465682 - AluSx SINE Alu -17 295 1 2115 123 0 16 chr3 62058896 62059032 -165465546 - AluSx SINE Alu -174 138 1 528 326 99 9 chr3 62059089 62059322 -165465256 - MIR SINE MIR 0 262 9 315 257 126 62 chr3 62060502 62061015 -165463563 - L2 LINE L2 0 3313 2743 2264 116 0 0 chr3 62061015 62061309 -165463269 - AluSx SINE Alu -13 299 6 315 257 126 62 chr3 62061309 62061388 -165463190 - L2 LINE L2 -570 2743 2670 245 259 19 0 chr3 62061563 62061617 -165462961 + polypyrimidine Low_complexity Low_complexity 2 56 0 193 293 68 30 chr3 62062250 62062383 -165462195 - MIR SINE MIR -107 155 18 1414 259 159 47 chr3 62062626 62063322 -165461256 - LTR50 LTR ERVL -17 778 5 281 260 126 24 chr3 62063504 62063631 -165460947 + MIR SINE MIR 119 258 -4 390 314 0 21 chr3 62064104 62064244 -165460334 + MIR SINE MIR 40 176 -86 5096 165 33 38 chr3 62065045 62065131 -165459447 - L1MA10 LINE L1 -21 6313 6228 2452 83 133 8 chr3 62065131 62065529 -165459049 - LTR7 LTR ERV1 -2 448 1 5096 165 33 38 chr3 62065529 62065978 -165458600 - L1MA10 LINE L1 -106 6228 5778 2032 127 38 14 chr3 62065978 62066270 -165458308 + AluSx SINE Alu 1 299 -13 5096 165 33 38 chr3 62066270 62066835 -165457743 - L1MA10 LINE L1 -556 5778 5219 763 166 0 19 chr3 62066825 62066982 -165457596 + L1MA10 LINE L1 5083 5236 -910 * 585 318 106 18 chr3 62067007 62067526 -165457052 + L2 LINE L2 2733 3288 -25 308 308 28 35 chr3 62067556 62067699 -165456879 - MIR SINE MIR -34 228 87 261 295 13 0 chr3 62068053 62068131 -165456447 + L2 LINE L2 3185 3263 -9 2625 64 0 0 chr3 62068380 62068691 -165455887 - AluY SINE Alu 0 311 1 456 19 0 0 chr3 62070070 62070123 -165454455 + (TG)n Simple_repeat Simple_repeat 2 54 0 205 378 44 0 chr3 62070284 62070374 -165454204 + L2 LINE L2 3151 3244 -28 204 97 0 0 chr3 62070392 62070423 -165454155 + (TG)n Simple_repeat Simple_repeat 2 32 0 196 264 132 0 chr3 62071119 62071172 -165453406 + MIR SINE MIR 82 141 -67 1245 123 36 64 chr3 62074021 62074241 -165450337 - AluJb SINE Alu -13 299 86 23 54 0 0 chr3 62074533 62074570 -165450008 + AT_rich Low_complexity Low_complexity 1 37 0 1662 187 10 20 chr3 62075894 62076193 -165448385 + AluJb SINE Alu 1 296 -16 672 219 179 0 chr3 62077345 62077496 -165447082 + MER45A DNA AcHobo 1 178 0 37 39 0 0 chr3 62077967 62078018 -165446560 + AT_rich Low_complexity Low_complexity 1 51 0 940 132 7 0 chr3 62078040 62078176 -165446402 - AluJo SINE Alu -171 141 5 399 350 9 18 chr3 62080887 62081107 -165443471 + MIR SINE MIR 33 250 -12 298 286 135 8 chr3 62081202 62081328 -165443250 + MER117 DNA MER1_type 2 143 -54 211 275 66 33 chr3 62081364 62081455 -165443123 + MIR3 SINE MIR 67 160 -48 495 200 114 36 chr3 62081523 62081663 -165442915 + MER103 DNA DNA 14 164 -2 276 30 0 0 chr3 62082524 62082557 -165442021 + (TTCA)n Simple_repeat Simple_repeat 3 35 0 1898 297 143 14 chr3 62082598 62083713 -165440865 - L2 LINE L2 -1941 1373 115 367 250 114 0 chr3 62083964 62084096 -165440482 - MER103 DNA DNA -3 163 17 266 265 12 0 chr3 62084096 62084179 -165440399 + L2 LINE L2 722 805 -2509 301 326 121 0 chr3 62084304 62084436 -165440142 + MIR SINE MIR 107 254 -8 2485 87 0 0 chr3 62086672 62086981 -165437597 + AluSg SINE Alu 1 309 -1 284 48 24 0 chr3 62089351 62089393 -165435185 + (GA)n Simple_repeat Simple_repeat 1 43 0 2088 112 0 62 chr3 62089487 62089808 -165434770 + AluSx SINE Alu 1 301 -11 1788 156 17 17 chr3 62089915 62090216 -165434362 - AluSx SINE Alu -11 301 1 297 0 0 0 chr3 62090394 62090427 -165434151 + (CA)n Simple_repeat Simple_repeat 1 33 0 1966 128 57 0 chr3 62090579 62090860 -165433718 + AluSx SINE Alu 3 299 -13 397 339 96 5 chr3 62091629 62091847 -165432731 + MIR SINE MIR 2 239 -23 1972 199 46 39 chr3 62091916 62092195 -165432383 - MLT1C LTR MaLR -7 460 175 2109 101 37 0 chr3 62092195 62092492 -165432086 - AluSq SINE Alu -5 308 1 1972 199 46 39 chr3 62092492 62092669 -165431909 - MLT1C LTR MaLR -292 175 1 1179 208 18 5 chr3 62093486 62093707 -165430871 - MER58A DNA MER1_type 0 224 1 213 375 11 0 chr3 62093765 62093853 -165430725 + MIR SINE MIR 4 92 -170 1142 192 77 0 chr3 62094348 62094556 -165430022 + MER58A DNA MER1_type 1 224 0 1085 264 87 7 chr3 62094813 62095123 -165429455 + MER119 DNA MER1_type 7 341 -242 351 281 0 0 chr3 62095157 62095239 -165429339 + MER119 DNA MER1_type 448 529 -54 2103 113 3 38 chr3 62095361 62095680 -165428898 - AluSg SINE Alu 0 310 3 217 195 13 13 chr3 62096646 62096723 -165427855 + GA-rich Low_complexity Low_complexity 2 78 0 279 335 40 20 chr3 62096764 62096916 -165427662 + MIR SINE MIR 90 244 -18 2083 97 73 0 chr3 62096953 62097242 -165427336 + AluSg SINE Alu 1 310 0 2097 261 82 80 chr3 62097345 62098729 -165425849 + L2 LINE L2 1911 3307 -6 186 43 0 0 chr3 62098729 62098752 -165425826 + (CAT)n Simple_repeat Simple_repeat 2 24 0 2184 99 17 13 chr3 62100214 62100516 -165424062 - AluSx SINE Alu -9 303 1 188 61 61 0 chr3 62100758 62100791 -165423787 + T-rich Low_complexity Low_complexity 2 36 0 198 0 0 0 chr3 62101269 62101291 -165423287 + (CCA)n Simple_repeat Simple_repeat 1 22 0 7282 116 51 22 chr3 62101485 62102675 -165421903 + Tigger3b DNA MER2_type 1 1225 -6 243 229 69 76 chr3 62103178 62103263 -165421315 - L1ME4a LINE L1 -195 5926 5841 2262 116 0 0 chr3 62103263 62103556 -165421022 - AluSq SINE Alu -20 293 1 243 229 69 76 chr3 62103556 62103601 -165420977 - L1ME4a LINE L1 -280 5841 5797 442 337 50 14 chr3 62103652 62103931 -165420647 - L1ME4a LINE L1 -439 5682 5394 1919 157 13 3 chr3 62105233 62105533 -165419045 + AluJb SINE Alu 1 303 -9 283 296 38 53 chr3 62105537 62105669 -165418909 - MER5B DNA MER1_type -57 132 1 332 225 0 56 chr3 62105566 62105655 -165418923 + MER5A DNA MER1_type 106 189 0 381 233 44 53 chr3 62107882 62108054 -165416524 + MIR SINE MIR 30 206 -56 218 300 12 38 chr3 62108343 62108423 -165416155 - MIR SINE MIR -150 112 35 950 194 24 39 chr3 62108580 62108786 -165415792 - MER3 DNA MER1_type 0 209 7 22 0 0 0 chr3 62108834 62108856 -165415722 + AT_rich Low_complexity Low_complexity 1 22 0 365 362 111 0 chr3 62108975 62109174 -165415404 - MIR SINE MIR -29 233 13 5703 136 31 5 chr3 62109757 62111490 -165413088 + L1PA15 LINE L1 4415 6165 0 187 327 0 0 chr3 62111764 62111819 -165412759 + MIR SINE MIR 204 258 -4 2132 132 0 16 chr3 62117250 62117553 -165407025 - AluSx SINE Alu -14 298 1 1505 179 4 4 chr3 62117603 62117854 -165406724 - AluJb SINE Alu -15 297 47 1585 199 7 7 chr3 62117882 62118179 -165406399 + AluJo SINE Alu 2 298 -14 297 262 202 36 chr3 62118321 62118489 -165406089 - L2 LINE L2 -1 3312 3117 657 256 65 63 chr3 62118511 62118907 -165405671 - MLT1J1 LTR MaLR 0 409 17 289 331 73 15 chr3 62119298 62119434 -165405144 + MIR3 SINE MIR 7 150 -58 253 227 0 0 chr3 62119579 62119623 -165404955 - MLT1L LTR MaLR -98 517 474 763 312 60 7 chr3 62119732 62120014 -165404564 - MLT1L LTR MaLR -315 300 4 434 221 35 18 chr3 62120285 62120398 -165404180 + MIR SINE MIR 39 153 -109 1401 214 79 60 chr3 62120414 62120582 -165403996 - MLT1D LTR MaLR 0 505 342 2425 128 48 14 chr3 62120582 62120934 -165403644 + THE1B LTR MaLR 1 364 0 1401 214 79 60 chr3 62120934 62121261 -165403317 - MLT1D LTR MaLR -163 342 1 357 222 11 11 chr3 62121264 62121354 -165403224 + MIR SINE MIR 163 252 -10 354 247 236 28 chr3 62121746 62121924 -165402654 + MIR SINE MIR 14 228 -34 584 176 24 32 chr3 62122976 62123122 -165401456 + L1ME LINE L1 5653 5799 -363 3859 158 58 69 chr3 62123155 62123978 -165400600 - MER21B LTR ERV1 -49 814 1 808 148 140 38 chr3 62123985 62124351 -165400227 + L1MA9 LINE L1 5787 6292 0 368 194 65 19 chr3 62124353 62124461 -165400117 - L1MD3 LINE L1 -7 7988 7876 1313 209 91 65 chr3 62124462 62125064 -165399514 - MER4C LTR ERV1 0 465 1 21 0 0 0 chr3 62125068 62125089 -165399489 + AT_rich Low_complexity Low_complexity 1 21 0 1395 247 99 23 chr3 62125197 62125743 -165398835 - L1ME3A LINE L1 -112 6373 5766 746 112 5 48 chr3 62125755 62125943 -165398635 + (TG)n Simple_repeat Simple_repeat 1 180 0 758 128 41 0 chr3 62125967 62126139 -165398439 + (TG)n Simple_repeat Simple_repeat 2 180 0 11903 208 64 76 chr3 62126246 62129719 -165394859 - L1ME3A LINE L1 -754 5707 2082 2470 90 0 3 chr3 62129719 62130031 -165394547 + AluSq SINE Alu 1 311 -2 11903 208 64 76 chr3 62130031 62132080 -165392498 - L1ME3A LINE L1 -4379 2082 9 23857 90 7 1 chr3 62132081 62136159 -165388419 + L1PA7 LINE L1 2059 6153 -1 580 275 85 44 chr3 62136226 62136845 -165387733 - L1MEd LINE L1 -4862 1257 694 655 116 0 0 chr3 62137374 62137460 -165387118 - AluS SINE Alu -226 87 2 2352 105 0 0 chr3 62137958 62138262 -165386316 + AluY SINE Alu 1 304 -7 221 0 0 33 chr3 62138731 62138761 -165385817 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 2114 114 0 0 chr3 62138763 62139043 -165385535 - AluSx SINE Alu -32 280 1 226 258 121 0 chr3 62143962 62144028 -165380550 + L2 LINE L2 3194 3267 -5 241 213 69 88 chr3 62144057 62144217 -165380361 - L1ME4a LINE L1 -4 6117 5961 1047 123 0 0 chr3 62144218 62144381 -165380197 + (TA)n Simple_repeat Simple_repeat 1 163 0 264 30 0 0 chr3 62144380 62144413 -165380165 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 909 271 96 23 chr3 62144417 62144935 -165379643 - L1ME4a LINE L1 -202 5919 5349 421 338 25 19 chr3 62145001 62145161 -165379417 + MIR SINE MIR 6 166 -96 387 333 93 32 chr3 62145357 62145414 -165379164 - L2 LINE L2 -60 3253 3201 381 43 0 0 chr3 62145414 62145461 -165379117 + (TG)n Simple_repeat Simple_repeat 2 48 0 387 333 93 32 chr3 62145461 62145916 -165378662 - L2 LINE L2 -112 3201 2687 2084 125 0 3 chr3 62145916 62146205 -165378373 - AluSx SINE Alu -24 288 1 387 333 93 32 chr3 62146205 62146350 -165378228 - L2 LINE L2 -626 2687 2552 1448 178 108 0 chr3 62147109 62147378 -165377200 + AluJb SINE Alu 1 298 -14 1894 131 0 21 chr3 62147410 62147693 -165376885 + AluSx SINE Alu 34 310 -2 399 119 0 0 chr3 62147991 62148058 -165376520 + (TG)n Simple_repeat Simple_repeat 2 68 0 203 233 0 0 chr3 62148058 62148112 -165376466 + (TA)n Simple_repeat Simple_repeat 2 55 0 270 352 19 19 chr3 62148171 62148276 -165376302 + L2 LINE L2 3163 3267 -5 252 268 62 31 chr3 62149615 62149712 -165374866 - MIR SINE MIR -66 196 97 636 165 118 8 chr3 62149712 62149839 -165374739 + FLAM_C SINE Alu 2 142 -1 433 320 6 6 chr3 62149848 62150020 -165374558 - L1ME4a LINE L1 -1242 4904 4733 950 208 65 12 chr3 62150135 62150380 -165374198 - AluJo SINE Alu -24 288 31 1944 128 7 7 chr3 62150380 62150691 -165373887 + AluSx SINE Alu 1 311 0 233 313 137 52 chr3 62151384 62151617 -165372961 - L2 LINE L2 -12 3301 3049 260 331 49 33 chr3 62151622 62151806 -165372772 - L2 LINE L2 -427 2887 2701 213 313 47 0 chr3 62152152 62152216 -165372362 - L2 LINE L2 -7 3265 3199 188 274 67 52 chr3 62153065 62153200 -165371378 - MIR SINE MIR -55 207 71 2498 203 27 25 chr3 62153237 62153793 -165370785 - MER74A LTR ERVL -1 557 1 248 249 94 83 chr3 62155389 62155570 -165369008 + MER5A DNA MER1_type 7 189 0 * 357 301 0 0 chr3 62155570 62155653 -165368925 + L2 LINE L2 2578 2660 -654 965 295 91 35 chr3 62155742 62156322 -165368256 + L2 LINE L2 2666 3288 -25 266 322 54 7 chr3 62157513 62157662 -165366916 - L1MC/D LINE L1 -1997 5811 5656 213 306 24 0 chr3 62158157 62158242 -165366336 + (TGG)n Simple_repeat Simple_repeat 2 88 0 2238 102 0 7 chr3 62159020 62159314 -165365264 - AluSc SINE Alu -17 292 1 2079 131 10 7 chr3 62161097 62161403 -165363175 - AluSx SINE Alu -3 309 3 548 247 34 133 chr3 62161539 62161891 -165362687 + MLT1I LTR MaLR 73 389 -20 222 331 13 51 chr3 62161908 62161982 -165362596 + MIR SINE MIR 97 163 -99 1676 132 4 4 chr3 62161982 62162248 -165362330 - L1MA8 LINE L1 -4 6287 6022 222 331 13 51 chr3 62162248 62162330 -165362248 + MIR SINE MIR 163 247 -15 290 311 64 64 chr3 62162485 62162720 -165361858 + MIR SINE MIR 8 242 -20 198 261 43 14 chr3 62163695 62163764 -165360814 + MIR3 SINE MIR 120 190 -18 27 0 0 0 chr3 62164052 62164079 -165360499 + AT_rich Low_complexity Low_complexity 1 27 0 643 314 31 14 chr3 62165927 62166150 -165358428 - MIR SINE MIR -21 241 15 22 0 0 0 chr3 62167814 62167836 -165356742 + AT_rich Low_complexity Low_complexity 1 22 0 231 200 20 40 chr3 62168086 62168136 -165356442 + MIR SINE MIR 13 61 -201 1446 269 118 17 chr3 62168347 62169211 -165355367 - L2 LINE L2 -103 3210 2256 324 355 137 42 chr3 62170436 62170845 -165353733 + L2 LINE L2 2820 3267 -5 2493 75 10 0 chr3 62171054 62171361 -165353217 + AluY SINE Alu 1 310 -1 226 344 73 16 chr3 62171492 62171684 -165352894 + MIR SINE MIR 47 249 -13 312 137 0 0 chr3 62171872 62171923 -165352655 + (TG)n Simple_repeat Simple_repeat 2 52 0 226 152 0 0 chr3 62171929 62171975 -165352603 + LTR66 LTR ERVL 394 439 -171 251 214 71 0 chr3 62171983 62172067 -165352511 + L1MC4 LINE L1 6614 6703 -1339 * 261 232 0 133 chr3 62172044 62172195 -165352383 + L1ME4a LINE L1 5935 6065 -56 4472 254 98 69 chr3 62173899 62175850 -165348728 + L1MC4a LINE L1 4735 6774 -1034 231 114 0 0 chr3 62175850 62175885 -165348693 + (TAA)n Simple_repeat Simple_repeat 2 36 0 4472 254 98 69 chr3 62175885 62176537 -165348041 + L1MC4a LINE L1 6774 7406 -402 465 294 41 29 chr3 62177627 62177797 -165346781 + MIR SINE MIR 19 190 -72 3451 105 25 23 chr3 62178235 62178748 -165345830 + MER75 DNA T2_type 1 514 0 22 70 0 0 chr3 62178951 62178994 -165345584 + AT_rich Low_complexity Low_complexity 1 43 0 1575 243 93 42 chr3 62179449 62180038 -165344540 - MLT1E3 LTR MaLR -5 619 1 2222 131 113 35 chr3 62182365 62182762 -165341816 - MSTA LTR MaLR 0 428 1 2314 105 0 3 chr3 62182802 62183106 -165341472 - AluSg SINE Alu -7 303 1 1482 191 27 30 chr3 62184404 62184702 -165339876 + AluJo SINE Alu 1 297 -5 968 181 128 13 chr3 62186222 62186474 -165338104 - MSTA LTR MaLR -116 316 32 226 309 131 0 chr3 62186787 62186871 -165337707 + L2 LINE L2 3188 3282 -31 2138 126 0 3 chr3 62187275 62187568 -165337010 - AluSx SINE Alu -20 292 1 318 278 35 81 chr3 62187733 62187931 -165336647 + L2 LINE L2 2839 3027 -245 195 338 81 0 chr3 62188066 62188140 -165336438 + L2 LINE L2 3169 3248 -24 322 309 111 0 chr3 62190484 62190610 -165333968 + MIR SINE MIR 123 262 0 303 347 33 0 chr3 62191148 62191269 -165333309 - MIR SINE MIR -98 164 40 2418 97 0 0 chr3 62191494 62191805 -165332773 + AluY SINE Alu 1 311 0 235 81 0 54 chr3 62192178 62192215 -165332363 - MIR SINE MIR -165 97 63 315 265 121 0 chr3 62192576 62192659 -165331919 + MER5A DNA MER1_type 9 101 -88 2303 151 26 48 chr3 62192924 62193341 -165331237 + MLT2D LTR ERVL 5 412 -2 22 35 0 0 chr3 62193606 62193635 -165330943 + AT_rich Low_complexity Low_complexity 1 29 0 1294 210 0 0 chr3 62193820 62194039 -165330539 - MER58A DNA MER1_type -5 219 1 386 53 18 0 chr3 62194952 62195009 -165329569 + (TG)n Simple_repeat Simple_repeat 1 58 0 1609 144 13 69 chr3 62196148 62196454 -165328124 + AluSx SINE Alu 13 301 -11 1742 159 17 17 chr3 62196561 62196862 -165327716 - AluSx SINE Alu -11 301 1 182 309 103 0 chr3 62196889 62196957 -165327621 - MIR SINE MIR -137 125 51 297 0 0 0 chr3 62197040 62197073 -165327505 + (CA)n Simple_repeat Simple_repeat 1 33 0 1927 131 57 0 chr3 62197225 62197537 -165327041 + AluSq SINE Alu 3 330 0 2172 121 0 10 chr3 62197540 62197846 -165326732 + AluSg SINE Alu 1 303 -7 234 268 10 62 chr3 62198249 62198346 -165326232 + MLT1I LTR MaLR 318 409 0 297 262 202 36 chr3 62198368 62198536 -165326042 + L2 LINE L2 3117 3312 -1 1585 199 7 7 chr3 62198678 62198975 -165325603 - AluJo SINE Alu -14 298 2 1442 168 4 28 chr3 62199003 62199253 -165325325 + AluJb SINE Alu 47 290 -22 2290 100 6 3 chr3 62199304 62199615 -165324963 + AluSx SINE Alu 1 312 0 206 273 0 91 chr3 62201277 62201354 -165323224 + MIR3 SINE MIR 113 182 -26 21 36 0 0 chr3 62201414 62201442 -165323136 + AT_rich Low_complexity Low_complexity 1 28 0 244 188 203 14 chr3 62202245 62202314 -165322264 + L2 LINE L2 3188 3269 -3 1141 208 121 84 chr3 62203423 62203961 -165320617 - MER34B LTR ERV1 -2 563 6 252 317 134 0 chr3 62204625 62204707 -165319871 + MIR SINE MIR 36 128 -80 194 244 22 0 chr3 62204890 62204935 -165319643 + L2 LINE L2 3263 3308 -5 215 259 0 0 chr3 62205010 62205064 -165319514 - MIR SINE MIR -12 250 197 24 67 0 0 chr3 62205077 62205122 -165319456 + AT_rich Low_complexity Low_complexity 1 45 0 407 239 11 11 chr3 62205144 62205236 -165319342 - MIR SINE MIR -84 178 87 596 292 28 6 chr3 62206063 62206241 -165318337 + MIR SINE MIR 3 184 -78 1733 262 45 39 chr3 62208369 62208941 -165315637 - MLT1K LTR MaLR -6 582 7 1176 247 58 3 chr3 62209683 62210064 -165314514 - L1MEc LINE L1 -2461 3754 3353 1976 285 89 49 chr3 62210129 62211590 -165312988 - L1MEc LINE L1 -4221 2175 656 203 379 43 0 chr3 62212241 62212381 -165312197 + MIR SINE MIR 117 262 0 2098 122 0 10 chr3 62214232 62214526 -165310052 + AluSg SINE Alu 1 291 -19 2084 139 0 3 chr3 62216964 62217265 -165307313 - AluSx SINE Alu -12 300 1 301 323 141 10 chr3 62217384 62217582 -165306996 + L1ME LINE L1 5603 5826 -295 40020 47 2 2 chr3 62218593 62224193 -165300385 + L1PA7 LINE L1 551 6153 -1 580 275 85 44 chr3 62224260 62224879 -165299699 - L1MEd LINE L1 -4862 1257 694 655 116 0 0 chr3 62225408 62225494 -165299084 - AluS SINE Alu -225 87 2 2210 112 0 0 chr3 62225992 62226279 -165298299 + AluY SINE Alu 1 287 -24 374 342 82 19 chr3 62226296 62226733 -165297845 + L2 LINE L2 2727 3201 -112 381 43 0 0 chr3 62226733 62226780 -165297798 + (CA)n Simple_repeat Simple_repeat 2 48 0 374 342 82 19 chr3 62226780 62226837 -165297741 + L2 LINE L2 3201 3253 -60 421 338 25 19 chr3 62227033 62227193 -165297385 - MIR SINE MIR -96 166 6 909 271 96 23 chr3 62227259 62227777 -165296801 + L1ME4a LINE L1 5349 5919 -202 255 31 0 0 chr3 62227782 62227814 -165296764 + (TG)n Simple_repeat Simple_repeat 2 33 0 * 288 77 0 0 chr3 62227813 62227852 -165296726 + (TA)n Simple_repeat Simple_repeat 2 40 0 241 213 69 88 chr3 62227853 62228013 -165296565 + L1ME4a LINE L1 5961 6117 -4 226 258 121 0 chr3 62228042 62228108 -165296470 - L2 LINE L2 -5 3267 3194 2078 111 4 0 chr3 62233027 62233306 -165291272 + AluSx SINE Alu 1 280 -32 221 0 0 33 chr3 62233308 62233338 -165291240 + (GAAA)n Simple_repeat Simple_repeat 2 30 0 362 328 30 8 chr3 62233816 62233950 -165290628 + MIR3 SINE MIR 67 203 -5 2193 109 30 0 chr3 62234330 62234633 -165289945 + AluSx SINE Alu 1 312 0 308 200 13 40 chr3 62234745 62234820 -165289758 - MIR SINE MIR -87 175 103 397 285 122 79 chr3 62235790 62236218 -165288360 - L2 LINE L2 -1 3271 2826 323 304 5 72 chr3 62236902 62237096 -165287482 + L2 LINE L2 1713 1893 -1421 1630 147 13 42 chr3 62237108 62237414 -165287164 - AluSx SINE Alu -1 311 15 26 0 0 0 chr3 62237414 62237440 -165287138 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr3 62237509 62237533 -165287045 + AT_rich Low_complexity Low_complexity 1 24 0 239 264 0 0 chr3 62237587 62237640 -165286938 + L2 LINE L2 2715 2767 -547 353 236 162 54 chr3 62237795 62238036 -165286542 + L1M4 LINE L1 3651 3917 -2229 935 202 121 0 chr3 62238758 62238956 -165285622 + MER58A DNA MER1_type 3 224 0 266 220 57 31 chr3 62238987 62239147 -165285431 + MER5C DNA MER1_type 62 314 -10 1380 164 58 92 chr3 62240092 62240439 -165284139 + MLT1E LTR MaLR 259 593 0 945 196 65 5 chr3 62240538 62240737 -165283841 - MIR SINE MIR -1 261 51 2613 163 39 72 chr3 62241734 62242171 -165282407 - MER74A LTR ERVL 0 558 143 1788 106 61 65 chr3 62242171 62242464 -165282114 - AluSx SINE Alu -10 302 11 2613 163 39 72 chr3 62242464 62242598 -165281980 - MER74A LTR ERVL -415 143 6 1054 175 73 18 chr3 62243808 62244081 -165280497 - L1ME3 LINE L1 -329 5833 5524 242 367 101 13 chr3 62244142 62244300 -165280278 + MIR3 SINE MIR 1 172 -36 1500 158 91 10 chr3 62244684 62244982 -165279596 - MLT1H1 LTR MaLR -48 507 186 225 0 0 0 chr3 62245957 62245982 -165278596 + (TC)n Simple_repeat Simple_repeat 2 26 0 326 68 80 0 chr3 62245982 62246070 -165278508 + (TA)n Simple_repeat Simple_repeat 2 96 0 37 23 0 0 chr3 62246167 62246211 -165278367 + AT_rich Low_complexity Low_complexity 1 44 0 652 117 0 32 chr3 62246248 62246342 -165278236 + AluJ/FLAM SINE Alu 1 91 -221 393 257 29 9 chr3 62248190 62248295 -165276283 + MER5A DNA MER1_type 6 112 -77 1512 148 36 20 chr3 62249407 62249711 -165274867 + L1PA3 LINE L1 5846 6154 -1 264 278 33 22 chr3 62249989 62250079 -165274499 - MLT1K LTR MaLR -342 246 156 536 333 40 20 chr3 62250450 62250651 -165273927 - MIR SINE MIR -30 232 28 721 176 11 22 chr3 62250651 62250923 -165273655 + CT-rich Low_complexity Low_complexity 1 269 0 231 149 0 64 chr3 62250925 62250972 -165273606 + (TTTC)n Simple_repeat Simple_repeat 3 46 0 400 281 117 101 chr3 62250972 62251349 -165273229 - L2 LINE L2 -9 3304 2922 182 281 181 25 chr3 62251354 62251514 -165273064 - L2 LINE L2 -575 2739 2555 540 309 125 75 chr3 62252059 62252630 -165271948 + L2 LINE L2 1990 2596 -718 2313 104 0 10 chr3 62252630 62252939 -165271639 - AluSx SINE Alu -6 306 1 540 309 125 75 chr3 62252939 62252992 -165271586 + L2 LINE L2 2596 2645 -669 427 273 0 25 chr3 62253018 62253139 -165271439 + MIR SINE MIR 111 228 -34 368 236 0 0 chr3 62253214 62253286 -165271292 - MLT1J LTR MaLR -201 310 239 381 345 21 31 chr3 62253924 62254115 -165270463 + MIR SINE MIR 71 259 -3 2085 136 0 13 chr3 62254999 62255308 -165269270 - AluJb SINE Alu -7 305 1 407 298 8 8 chr3 62255310 62255431 -165269147 - MER117 DNA MER1_type -73 124 4 429 201 145 25 chr3 62256824 62256983 -165267595 + MIR SINE MIR 78 255 -7 768 161 6 78 chr3 62257434 62257614 -165266964 - MER20 DNA MER1_type 0 219 53 2001 117 41 0 chr3 62259327 62259617 -165264961 - AluSx SINE Alu -10 302 1 250 325 84 6 chr3 62260352 62260518 -165264060 + MIR SINE MIR 84 262 0 2235 105 0 0 chr3 62260707 62260992 -165263586 + AluSc SINE Alu 1 285 -24 752 125 8 0 chr3 62262777 62262905 -165261673 + (TTTC)n Simple_repeat Simple_repeat 2 130 0 191 59 0 29 chr3 62263885 62263919 -165260659 + (TTCC)n Simple_repeat Simple_repeat 2 34 0 2309 109 0 10 chr3 62263947 62264258 -165260320 - AluSq SINE Alu -5 308 1 22 70 0 0 chr3 62264459 62264502 -165260076 + AT_rich Low_complexity Low_complexity 1 43 0 309 300 91 51 chr3 62264640 62264993 -165259585 + L1ME4a LINE L1 5704 6070 -51 6074 74 0 1 chr3 62268156 62268955 -165255623 - L1P LINE L1 -3938 2208 1411 22 79 0 0 chr3 62269139 62269177 -165255401 + GC_rich Low_complexity Low_complexity 1 38 0 1800 155 7 3 chr3 62270365 62270649 -165253929 - AluSx SINE Alu -23 289 5 262 331 24 30 chr3 62272825 62272991 -165251587 - L2 LINE L2 -17 3296 3132 361 255 47 42 chr3 62273379 62273571 -165251007 - MER4D LTR ERV1 -47 856 664 2086 149 31 50 chr3 62274378 62274794 -165249784 - MLT2D LTR ERVL -2 412 5 285 265 121 0 chr3 62275059 62275142 -165249436 - MER5A DNA MER1_type -88 101 9 221 81 0 54 chr3 62275503 62275540 -165249038 + MIR SINE MIR 63 97 -165 2436 97 0 0 chr3 62275913 62276224 -165248354 - AluY SINE Alu 0 311 1 1182 221 87 16 chr3 62277225 62277537 -165247041 - MLT1C LTR MaLR -2 465 132 1583 207 79 38 chr3 62277742 62278187 -165246391 - MLT1C LTR MaLR -2 465 3 2457 63 0 3 chr3 62279182 62279481 -165245097 + AluY SINE Alu 1 298 -13 375 290 145 0 chr3 62280460 62280605 -165243973 - MIR SINE MIR -34 228 63 2310 102 3 0 chr3 62280610 62280914 -165243664 - AluSg SINE Alu -5 305 1 2506 73 0 3 chr3 62280925 62281227 -165243351 - AluY SINE Alu -10 301 1 262 288 0 0 chr3 62281252 62281332 -165243246 + (TAA)n Simple_repeat Simple_repeat 1 80 0 315 311 104 12 chr3 62281338 62281502 -165243076 - MIR SINE MIR -10 252 74 211 360 63 9 chr3 62282632 62282743 -165241835 - L2 LINE L2 -13 3259 3143 216 97 0 0 chr3 62282761 62282792 -165241786 + (TTTTC)n Simple_repeat Simple_repeat 5 35 0 2254 128 0 0 chr3 62282794 62283106 -165241472 - AluSx SINE Alu 0 312 1 2077 85 85 0 chr3 62283185 62283466 -165241112 - AluSq SINE Alu -8 305 1 240 234 0 62 chr3 62284813 62284877 -165239701 - L2 LINE L2 -87 3226 3167 296 353 44 5 chr3 62288900 62289104 -165235474 + MIR SINE MIR 8 219 -43 281 260 0 0 chr3 62290535 62290608 -165233970 - MIR SINE MIR -8 254 182 375 271 47 16 chr3 62290773 62290902 -165233676 - MIR SINE MIR -91 171 39 1552 159 31 43 chr3 62291044 62291371 -165233207 - MER33 DNA MER1_type -1 323 1 238 308 89 14 chr3 62292418 62292632 -165231946 + L2 LINE L2 2895 3124 -189 191 211 0 0 chr3 62292829 62292867 -165231711 - L2 LINE L2 -3 3269 3232 30 27 0 0 chr3 62294146 62294183 -165230395 + AT_rich Low_complexity Low_complexity 1 37 0 579 264 43 10 chr3 62294694 62294902 -165229676 + LTR33 LTR ERVL 306 520 -1 215 231 8 34 chr3 62294953 62295070 -165229508 + GA-rich Low_complexity Low_complexity 1 114 0 250 239 0 15 chr3 62295163 62295230 -165229348 + LTR67 LTR ERVL 492 557 0 200 312 43 54 chr3 62295462 62295555 -165229023 + L2 LINE L2 3141 3232 -40 201 300 0 0 chr3 62295839 62295889 -165228689 + CT-rich Low_complexity Low_complexity 2 51 0 409 282 103 78 chr3 62295894 62296179 -165228399 - L2 LINE L2 -1 3312 3013 2066 139 7 3 chr3 62296179 62296489 -165228089 - AluSq SINE Alu -2 311 1 409 282 103 78 chr3 62296489 62296590 -165227988 - L2 LINE L2 -300 3013 2916 972 266 96 18 chr3 62296701 62297118 -165227460 + LTR16C LTR ERVL 7 491 0 417 20 0 0 chr3 62299385 62299435 -165225143 + (CA)n Simple_repeat Simple_repeat 1 50 0 498 254 14 14 chr3 62300214 62300352 -165224226 + MIR SINE MIR 96 233 -29 614 320 66 42 chr3 62300412 62301176 -165223402 - L2 LINE L2 -1 3271 2498 336 48 0 0 chr3 62301791 62301833 -165222745 + (CA)n Simple_repeat Simple_repeat 2 43 0 21 0 0 0 chr3 62303126 62303147 -165221431 + AT_rich Low_complexity Low_complexity 1 21 0 1723 143 52 7 chr3 62303687 62303973 -165220605 - AluSg SINE Alu -11 299 1 350 269 112 45 chr3 62305216 62305439 -165219139 - MIR SINE MIR -11 251 14 222 192 0 0 chr3 62305616 62305668 -165218910 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 839 288 122 47 chr3 62307008 62307459 -165217119 - MLT1K LTR MaLR -90 498 14 317 325 25 19 chr3 62308316 62308476 -165216102 - MIR SINE MIR -26 236 76 218 269 128 0 chr3 62308836 62308914 -165215664 + L2 LINE L2 3226 3313 0 414 0 0 0 chr3 62310465 62310511 -165214067 + (CA)n Simple_repeat Simple_repeat 2 47 0 312 48 0 0 chr3 62310601 62310643 -165213935 + (CA)n Simple_repeat Simple_repeat 2 43 0 384 260 29 124 chr3 62312376 62312618 -165211960 + MIR SINE MIR 7 225 -37 218 163 47 0 chr3 62312790 62312833 -165211745 + (TTTG)n Simple_repeat Simple_repeat 4 48 0 657 213 143 5 chr3 62313970 62314186 -165210392 - MIR SINE MIR 0 262 17 200 178 0 22 chr3 62314305 62314350 -165210228 + L2 LINE L2 3263 3306 -7 327 254 17 25 chr3 62315325 62315443 -165209135 - L1MC/D LINE L1 -2318 5490 5374 237 318 28 19 chr3 62315441 62315548 -165209030 - L1ME LINE L1 -302 5819 5712 * 378 188 281 8 chr3 62316086 62316214 -165208364 + MIR SINE MIR 85 247 -15 228 282 0 0 chr3 62316737 62316808 -165207770 + (ATG)n Simple_repeat Simple_repeat 1 71 0 543 250 61 21 chr3 62316812 62317024 -165207554 - MIR SINE MIR -4 258 2 180 111 0 0 chr3 62317992 62318019 -165206559 + (T)n Simple_repeat Simple_repeat 1 27 0 189 196 0 0 chr3 62321806 62321852 -165202726 + (CATA)n Simple_repeat Simple_repeat 1 46 0 2100 121 0 10 chr3 62322442 62322740 -165201838 - AluSg SINE Alu -15 295 1 887 261 61 45 chr3 62323075 62323218 -165201360 + L2 LINE L2 2913 3052 -261 497 16 16 0 chr3 62323218 62323280 -165201298 + (TC)n Simple_repeat Simple_repeat 2 64 0 887 261 61 45 chr3 62323280 62323511 -165201067 + L2 LINE L2 3052 3293 -20 190 114 23 23 chr3 62323516 62323560 -165201018 + GA-rich Low_complexity Low_complexity 1 44 0 180 271 0 17 chr3 62323709 62323768 -165200810 - MIR SINE MIR -90 118 61 265 246 0 0 chr3 62324185 62324242 -165200336 - MER116 DNA Mariner -22 58 2 393 308 30 12 chr3 62324244 62324413 -165200165 - MIR SINE MIR -73 189 18 222 352 48 9 chr3 62325300 62325405 -165199173 - MIR3 SINE MIR -15 193 85 32 0 0 0 chr3 62326140 62326172 -165198406 + AT_rich Low_complexity Low_complexity 1 32 0 216 0 0 0 chr3 62326400 62326424 -165198154 + (T)n Simple_repeat Simple_repeat 1 24 0 508 224 48 0 chr3 62326620 62326745 -165197833 + AluSp SINE Alu 2 132 -181 32 0 0 0 chr3 62327206 62327238 -165197340 + AT_rich Low_complexity Low_complexity 1 32 0 2009 144 0 7 chr3 62327674 62327965 -165196613 + AluSx SINE Alu 1 289 -23 23 0 0 0 chr3 62327971 62327994 -165196584 + AT_rich Low_complexity Low_complexity 1 23 0 374 312 0 0 chr3 62329341 62329450 -165195128 - L2 LINE L2 0 3272 3164 1135 351 74 8 chr3 62329576 62330242 -165194336 - L2 LINE L2 -345 2969 2260 2439 87 0 0 chr3 62330748 62331058 -165193520 + AluY SINE Alu 1 310 -1 378 0 0 0 chr3 62331714 62331756 -165192822 + (TG)n Simple_repeat Simple_repeat 2 43 0 2310 111 0 0 chr3 62333370 62333659 -165190919 + AluSx SINE Alu 1 289 -23 267 315 36 18 chr3 62334376 62334487 -165190091 - MIR SINE MIR -71 191 79 299 288 158 7 chr3 62338210 62338356 -165186222 + L3 LINE CR1 1409 1576 -1 557 164 20 14 chr3 62338443 62338589 -165185989 + CT-rich Low_complexity Low_complexity 3 149 0 349 278 0 0 chr3 62338711 62338837 -165185741 + A-rich Low_complexity Low_complexity 1 126 0 256 192 67 29 chr3 62338837 62338941 -165185637 - AluSq/x SINE Alu -181 122 15 250 254 0 0 chr3 62342718 62342785 -165181793 + T-rich Low_complexity Low_complexity 1 67 0 240 158 18 18 chr3 62343353 62343410 -165181168 - L2 LINE L2 0 3272 3216 344 135 0 0 chr3 62343428 62343480 -165181098 - MSTD LTR MaLR 0 396 345 4386 75 5 2 chr3 62343480 62344065 -165180513 - L1PA13 LINE L1 0 6163 5577 1017 259 110 55 chr3 62344165 62344591 -165179987 - MLT1F1 LTR MaLR -106 461 1 839 273 46 3 chr3 62344602 62344884 -165179694 + L2 LINE L2 2804 3097 -216 1194 207 9 0 chr3 62345287 62345504 -165179074 - AluJb SINE Alu -8 304 86 407 314 93 10 chr3 62345985 62346179 -165178399 + MIR SINE MIR 49 258 -4 191 322 56 11 chr3 62346324 62346414 -165178164 + MIR3 SINE MIR 67 160 -48 482 304 30 18 chr3 62346414 62346582 -165177996 + MER117 DNA MER1_type 1 170 -27 29 0 0 0 chr3 62346791 62346820 -165177758 + AT_rich Low_complexity Low_complexity 1 29 0 510 242 139 0 chr3 62348924 62349089 -165175489 + MER117 DNA MER1_type 7 194 -3 294 73 0 0 chr3 62350396 62350437 -165174141 + (T)n Simple_repeat Simple_repeat 1 41 0 510 324 5 34 chr3 62352918 62353125 -165171453 + MIR SINE MIR 48 248 -14 519 275 107 34 chr3 62353208 62353539 -165171039 + MLT1J2 LTR MaLR 17 381 -65 300 343 7 7 chr3 62353844 62353981 -165170597 - MIR3 SINE MIR -11 197 61 989 321 97 33 chr3 62354348 62355384 -165169194 + L2 LINE L2 2212 3313 0 270 303 55 0 chr3 62355422 62355531 -165169047 + MIR3 SINE MIR 15 129 -79 876 163 174 11 chr3 62355540 62355730 -165168848 - MER58A DNA MER1_type 0 224 4 1761 160 14 0 chr3 62356103 62356385 -165168193 - AluSg SINE Alu -24 286 1 341 300 91 51 chr3 62357845 62358198 -165166380 - L1ME4a LINE L1 -51 6070 5704 22 70 0 0 chr3 62358336 62358379 -165166199 + AT_rich Low_complexity Low_complexity 1 43 0 2245 105 0 0 chr3 62358580 62358866 -165165712 + AluSq SINE Alu 1 286 -27 1081 48 0 14 chr3 62358871 62359016 -165165562 + (GAAA)n Simple_repeat Simple_repeat 2 144 0 228 207 135 27 chr3 62360705 62360816 -165163762 - L1MB8 LINE L1 0 6178 6056 1211 172 19 0 chr3 62361217 62361426 -165163152 + MER20 DNA MER1_type 1 213 -6 240 125 194 42 chr3 62361524 62361596 -165162982 - L2 LINE L2 0 3313 3231 1267 311 92 32 chr3 62362453 62363701 -165160877 + L2 LINE L2 1270 2592 -722 233 184 40 64 chr3 62363881 62364006 -165160572 + L1MC5 LINE L1 7803 7924 -37 483 291 55 16 chr3 62364034 62364339 -165160239 + L2 LINE L2 2751 3068 -204 222 37 0 0 chr3 62364451 62364478 -165160100 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 189 316 53 0 chr3 62364579 62364655 -165159923 + MIR SINE MIR 88 167 -95 324 287 152 12 chr3 62364705 62364869 -165159709 - MIR SINE MIR -12 250 64 2062 156 0 0 chr3 62365075 62365370 -165159208 - AluJb SINE Alu -17 295 1 428 345 25 20 chr3 62366081 62366278 -165158300 + MIR SINE MIR 50 247 -15 2134 133 7 7 chr3 62366418 62366726 -165157852 + AluSx SINE Alu 3 310 -2 2340 109 0 0 chr3 62367598 62367900 -165156678 - AluSx SINE Alu -10 302 1 576 86 11 32 chr3 62367975 62368068 -165156510 - L1MB8 LINE L1 -1 6177 6087 4233 162 27 26 chr3 62368068 62368914 -165155664 - L1MB7 LINE L1 -148 6036 5188 186 324 14 0 chr3 62368978 62369049 -165155529 + L2 LINE L2 2299 2370 -944 476 250 95 0 chr3 62369457 62369605 -165154973 + MIR SINE MIR 101 262 0 25 65 0 0 chr3 62369605 62369651 -165154927 + AT_rich Low_complexity Low_complexity 1 46 0 192 125 0 0 chr3 62370886 62370918 -165153660 + (TC)n Simple_repeat Simple_repeat 1 32 0 354 226 125 87 chr3 62371443 62371653 -165152925 + L2 LINE L2 2749 2972 -300 1629 132 0 0 chr3 62371653 62371880 -165152698 - AluSc SINE Alu -82 227 1 354 226 125 87 chr3 62371880 62371967 -165152611 + L2 LINE L2 2972 3054 -218 14372 25 8 0 chr3 62373888 62376313 -165148265 + L1PA2 LINE L1 3724 6155 0 865 229 20 20 chr3 62376317 62376566 -165148012 + L1M4 LINE L1 3840 4088 -2058 249 287 111 0 chr3 62378617 62378725 -165145853 + MIR SINE MIR 125 244 -18 341 264 101 31 chr3 62379569 62379698 -165144880 + MIR SINE MIR 99 236 -26 23 0 0 0 chr3 62379731 62379754 -165144824 + AT_rich Low_complexity Low_complexity 1 23 0 1088 203 10 0 chr3 62380295 62380502 -165144076 + MER3 DNA MER1_type 1 209 0 731 235 29 45 chr3 62380863 62381106 -165143472 - MIR SINE MIR -21 241 3 432 0 0 0 chr3 62381165 62381213 -165143365 + (CA)n Simple_repeat Simple_repeat 2 49 0 333 242 91 79 chr3 62381231 62381483 -165143095 - L1MD1 LINE L1 -303 5939 5685 186 143 0 0 chr3 62381770 62381805 -165142773 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 216 0 0 0 chr3 62383318 62383342 -165141236 + (CTTG)n Simple_repeat Simple_repeat 3 26 0 323 343 60 6 chr3 62383751 62383917 -165140661 + MIR SINE MIR 28 202 -60 1022 227 19 5 chr3 62384619 62384835 -165139743 - MER58A DNA MER1_type -2 222 4 290 156 0 91 chr3 62384934 62385011 -165139567 + MIR3 SINE MIR 124 193 -15 265 282 145 0 chr3 62385305 62385436 -165139142 + MIR SINE MIR 79 228 -34 2148 116 7 7 chr3 62385462 62385764 -165138814 + AluSx SINE Alu 1 302 -10 1923 155 10 3 chr3 62386547 62386856 -165137722 + AluJb SINE Alu 1 311 -1 623 56 0 11 chr3 62387680 62387769 -165136809 + (TTCC)n Simple_repeat Simple_repeat 2 89 0 706 230 55 14 chr3 62387922 62388258 -165136320 - MLT1J2 LTR MaLR -22 428 4 2104 108 0 39 chr3 62388409 62388715 -165135863 - AluSx SINE Alu -14 298 5 213 65 0 0 chr3 62389364 62389395 -165135183 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 1997 109 3 21 chr3 62389397 62389682 -165134896 - AluSx SINE Alu -28 284 5 488 279 0 16 chr3 62390624 62390746 -165133832 + MIR SINE MIR 17 136 -126 895 213 183 0 chr3 62392006 62392208 -165132370 + MER8 DNA MER2_type 1 239 0 338 365 18 18 chr3 62392282 62392501 -165132077 - L2 LINE L2 -203 3069 2851 27 0 0 0 chr3 62393348 62393375 -165131203 + AT_rich Low_complexity Low_complexity 1 27 0 379 307 73 21 chr3 62393849 62394041 -165130537 - MIR SINE MIR -52 210 9 269 162 73 44 chr3 62395668 62395736 -165128842 + HERV9 LTR ERV1 1772 1841 -6558 1668 162 10 52 chr3 62397254 62397390 -165127188 + AluJo SINE Alu 1 141 -171 2271 109 0 0 chr3 62397390 62397693 -165126885 + AluY SINE Alu 1 303 -8 1668 162 10 52 chr3 62397693 62397865 -165126713 + AluJo SINE Alu 141 296 -16 1496 273 143 34 chr3 62397914 62399044 -165125534 - HAL1 LINE L1 -80 2427 1422 2354 64 0 3 chr3 62399044 62399368 -165125210 - AluY SINE Alu 0 323 1 1496 273 143 34 chr3 62399368 62399462 -165125116 - HAL1 LINE L1 -1085 1422 1340 252 0 0 0 chr3 62399462 62399490 -165125088 + (TG)n Simple_repeat Simple_repeat 2 29 0 1496 273 143 34 chr3 62399490 62399624 -165124954 - HAL1 LINE L1 -1167 1340 793 291 311 123 8 chr3 62399709 62399831 -165124747 - HAL1 LINE L1 -1863 644 509 213 360 50 0 chr3 62400163 62400263 -165124315 + MIR SINE MIR 23 127 -135 21 0 0 0 chr3 62401459 62401480 -165123098 + AT_rich Low_complexity Low_complexity 1 21 0 233 182 0 0 chr3 62401741 62401785 -165122793 - L2 LINE L2 -12 3260 3217 237 205 39 51 chr3 62401814 62401892 -165122686 - MIR SINE MIR -136 126 50 375 341 8 0 chr3 62402547 62402670 -165121908 - MLT2E LTR ERVL -464 164 41 234 281 16 0 chr3 62403459 62403523 -165121055 - MLT1K LTR MaLR 0 588 524 233 212 47 47 chr3 62403523 62403544 -165121034 - LTR67 LTR ERVL 0 557 473 527 303 107 60 chr3 62403569 62404047 -165120531 - MLT1K LTR MaLR -67 521 3 185 313 62 45 chr3 62404096 62404208 -165120370 + MIR3 SINE MIR 89 202 -6 697 261 69 16 chr3 62405612 62405857 -165118721 - MER20B DNA MER1_type -5 778 521 244 280 122 37 chr3 62405952 62406059 -165118519 - MER20B DNA MER1_type -408 375 260 196 320 149 21 chr3 62406266 62406460 -165118118 + MIR SINE MIR 29 247 -15 1822 150 10 7 chr3 62406499 62406793 -165117785 - AluSg SINE Alu -15 295 1 484 260 39 0 chr3 62407778 62407905 -165116673 - MIR SINE MIR -11 251 120 1902 171 263 43 chr3 62409647 62410290 -165114288 - LTR48 LTR ERV1 -3 784 1 1681 171 59 7 chr3 62411809 62412096 -165112482 - AluJo SINE Alu -10 302 1 284 212 192 48 chr3 62412701 62412847 -165111731 - L2 LINE L2 -27 3286 3120 1017 133 0 0 chr3 62412898 62413041 -165111537 + FRAM SINE Alu 4 146 -30 624 196 78 7 chr3 62413062 62413215 -165111363 - MER110A LTR ERV1 -3 465 302 227 152 0 87 chr3 62413241 62413287 -165111291 - MER110A LTR ERV1 -343 125 84 2002 146 11 0 chr3 62413471 62413758 -165110820 + AluJb SINE Alu 2 291 -21 2603 155 12 12 chr3 62416446 62416866 -165107712 - MSTC LTR MaLR -8 420 1 206 139 0 0 chr3 62417255 62417291 -165107287 - MIR SINE MIR -92 116 81 23 68 0 0 chr3 62417586 62417630 -165106948 + AT_rich Low_complexity Low_complexity 1 44 0 1133 193 0 0 chr3 62418023 62418225 -165106353 + MER3 DNA MER1_type 8 209 0 221 274 0 36 chr3 62418481 62418565 -165106013 + GA-rich Low_complexity Low_complexity 1 81 0 205 277 15 15 chr3 62419617 62419682 -165104896 + L2 LINE L2 2687 2751 -563 812 208 71 0 chr3 62419690 62419858 -165104720 - MER58A DNA MER1_type 0 224 45 234 237 85 0 chr3 62421130 62421189 -165103389 + MER5B DNA MER1_type 7 70 -108 1958 141 0 0 chr3 62421196 62421486 -165103092 + AluSx SINE Alu 13 302 0 294 176 23 92 chr3 62422076 62422207 -165102371 - MER113 DNA MER1_type? -395 126 5 2171 101 10 3 chr3 62423910 62424207 -165100371 - AluSx SINE Alu -13 299 1 315 323 19 26 chr3 62424810 62424965 -165099613 - MIR SINE MIR -56 206 53 233 224 20 0 chr3 62425017 62425066 -165099512 + CT-rich Low_complexity Low_complexity 5 54 0 197 183 46 39 chr3 62425081 62425234 -165099344 + (TCCCG)n Simple_repeat Simple_repeat 4 157 0 * 278 262 0 16 chr3 62425204 62425387 -165099191 + C-rich Low_complexity Low_complexity 1 180 0 934 130 0 33 chr3 62425391 62425575 -165099003 + (TCCCC)n Simple_repeat Simple_repeat 3 180 0 341 198 10 0 chr3 62425585 62425681 -165098897 + C-rich Low_complexity Low_complexity 4 100 0 252 211 0 0 chr3 62426576 62426647 -165097931 + (TTGG)n Simple_repeat Simple_repeat 2 72 0 781 275 40 0 chr3 62426799 62427046 -165097532 + MIR SINE MIR 2 258 -4 429 326 121 15 chr3 62427921 62428261 -165096317 - L2 LINE L2 0 3272 2897 465 304 50 17 chr3 62429304 62429485 -165095093 - MIR SINE MIR -20 242 56 2284 119 0 6 chr3 62430284 62430595 -165093983 + AluSx SINE Alu 1 309 -3 333 0 0 0 chr3 62431104 62431141 -165093437 + (CA)n Simple_repeat Simple_repeat 2 38 0 353 48 0 0 chr3 62431334 62431376 -165093202 - L1PA3 LINE L1 -157 5998 5957 1448 17 0 17 chr3 62431376 62431545 -165093033 + L1PA3 LINE L1 5986 6155 0 21 0 0 0 chr3 62432062 62432083 -165092495 + AT_rich Low_complexity Low_complexity 1 21 0 4182 96 4 0 chr3 62432781 62433333 -165091245 - MER41A LTR ERV1 0 554 1 13101 120 45 36 chr3 62433333 62437579 -165086999 - MER41A-int LTR ERV1 -2 5944 1 3619 124 20 13 chr3 62437579 62438129 -165086449 - MER41A LTR ERV1 0 554 1 749 194 105 31 chr3 62438225 62438416 -165086162 + MER3 DNA MER1_type 5 209 0 236 315 62 27 chr3 62440524 62440670 -165083908 + MIR3 SINE MIR 41 191 -17 195 42 0 0 chr3 62441770 62441794 -165082784 + (CCCA)n Simple_repeat Simple_repeat 2 25 0 555 300 74 13 chr3 62444546 62444776 -165079802 + MIR SINE MIR 2 245 -17 2179 142 0 0 chr3 62445292 62445602 -165078976 + AluSx SINE Alu 1 310 -2 472 136 0 0 chr3 62446193 62446259 -165078319 - MER45 DNA AcHobo -1 1580 1515 2357 97 3 0 chr3 62446268 62446566 -165078012 - AluSx SINE Alu -13 299 1 235 287 142 9 chr3 62446737 62446896 -165077682 + MIR SINE MIR 30 212 -50 388 289 20 26 chr3 62447105 62447257 -165077321 - MER5B DNA MER1_type -20 158 8 310 98 0 0 chr3 62447775 62447816 -165076762 - MSTA LTR MaLR 0 428 388 2015 127 106 48 chr3 62447842 62448221 -165076357 - MSTA LTR MaLR -27 401 1 395 19 19 0 chr3 62448929 62448981 -165075597 + (TG)n Simple_repeat Simple_repeat 1 53 0 592 311 29 21 chr3 62449664 62449902 -165074676 - MIR SINE MIR -12 250 11 2367 115 0 0 chr3 62450004 62450317 -165074261 - AluSq SINE Alu 0 313 1 448 244 130 108 chr3 62450350 62450850 -165073728 - MLT1J LTR MaLR 0 511 1 3532 45 0 0 chr3 62451804 62452226 -165072352 + L1PA7 LINE L1 5731 6152 -2 555 147 87 136 chr3 62452335 62452463 -165072115 + MER5B DNA MER1_type 4 122 -56 1589 165 12 73 chr3 62452463 62452791 -165071787 + AluJo SINE Alu 1 308 -4 555 147 87 136 chr3 62452791 62452846 -165071732 + MER5B DNA MER1_type 122 178 0 277 245 29 59 chr3 62453016 62453118 -165071460 + MIR SINE MIR 44 142 -66 2022 127 10 23 chr3 62453168 62453476 -165071102 - AluSx SINE Alu -8 304 1 2407 67 0 0 chr3 62453756 62454088 -165070490 - AluY SINE Alu 0 332 1 1146 136 0 11 chr3 62455443 62455627 -165068951 + L1PA8 LINE L1 5991 6172 0 383 279 26 22 chr3 62455954 62456117 -165068461 + MIR SINE MIR 13 175 -62 590 277 104 9 chr3 62456465 62456685 -165067893 - MIR SINE MIR -20 242 2 2249 116 3 7 chr3 62456919 62457220 -165067358 + AluSg SINE Alu 1 300 -10 265 288 54 36 chr3 62458016 62458127 -165066451 - L2 LINE L2 0 3272 3160 3167 152 72 18 chr3 62458432 62459043 -165065535 - LTR48B LTR ERV1 0 644 1 2267 96 0 0 chr3 62460034 62460320 -165064258 + AluSx SINE Alu 1 287 -21 257 0 0 29 chr3 62460320 62460354 -165064224 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 207 0 0 0 chr3 62461737 62461760 -165062818 + (TTG)n Simple_repeat Simple_repeat 2 24 0 333 0 0 0 chr3 62463929 62463966 -165060612 + (CA)n Simple_repeat Simple_repeat 2 38 0 306 252 100 96 chr3 62464956 62465186 -165059392 + MIR SINE MIR 24 254 -8 1573 125 19 4 chr3 62465187 62465443 -165059135 + L1PA15 LINE L1 5903 6162 -3 237 320 86 81 chr3 62465805 62466027 -165058551 + L2 LINE L2 3046 3268 -4 402 288 79 36 chr3 62466393 62466671 -165057907 + L1ME4a LINE L1 5619 5908 -213 320 332 78 24 chr3 62467121 62467326 -165057252 + MIR SINE MIR 28 243 -19 1035 181 52 9 chr3 62467631 62467841 -165056737 + MER20 DNA MER1_type 1 219 0 431 350 59 0 chr3 62469052 62469272 -165055306 + MIR SINE MIR 23 255 -7 2084 106 3 11 chr3 62469488 62469798 -165054780 + AluSx SINE Alu 1 308 0 579 301 35 62 chr3 62470266 62470525 -165054053 + MIR SINE MIR 10 261 -1 683 266 81 70 chr3 62470532 62470991 -165053587 + MER113 DNA MER1_type? 17 480 -41 504 262 218 0 chr3 62471331 62471537 -165053041 - MIR SINE MIR 0 262 12 260 224 45 0 chr3 62471643 62471710 -165052868 - MIR SINE MIR -41 221 152 327 222 262 16 chr3 62472276 62472402 -165052176 - MIR SINE MIR -105 157 1 207 286 22 22 chr3 62472403 62472494 -165052084 + (TTA)n Simple_repeat Simple_repeat 2 92 0 570 258 32 0 chr3 62472496 62472651 -165051927 - MIR SINE MIR -11 251 92 273 203 58 11 chr3 62473731 62473825 -165050753 - L1MC/D LINE L1 -733 5451 5365 876 125 0 0 chr3 62473987 62474107 -165050471 - FLAM_A SINE Alu -7 135 16 294 29 0 0 chr3 62474120 62474155 -165050423 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 502 280 139 51 chr3 62474196 62474913 -165049665 - L1MC/D LINE L1 -1334 4812 4027 683 109 8 17 chr3 62474913 62475032 -165049546 - L1MB4 LINE L1 0 6180 6063 502 280 139 51 chr3 62475032 62475054 -165049524 - L1MC/D LINE L1 -2119 4027 4008 24 77 0 0 chr3 62475194 62475246 -165049332 + AT_rich Low_complexity Low_complexity 1 52 0 225 257 27 0 chr3 62475248 62475322 -165049256 - L1MEd LINE L1 -1453 4676 4601 209 125 97 28 chr3 62475337 62475409 -165049169 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 209 123 57 38 chr3 62475431 62475537 -165049041 + (TA)n Simple_repeat Simple_repeat 2 109 0 2205 105 3 3 chr3 62475608 62475903 -165048675 + AluSx SINE Alu 1 295 -17 456 339 80 59 chr3 62475918 62476429 -165048149 - L1MEd LINE L1 -2373 3756 3235 345 300 0 0 chr3 62476645 62476735 -165047843 + L1MC4 LINE L1 6614 6703 -1339 321 322 0 0 chr3 62476681 62476771 -165047807 - L1MC4 LINE L1 -1339 6703 6614 * 477 307 17 27 chr3 62477153 62477449 -165047129 - L1MEd LINE L1 -3654 2475 2183 819 135 0 0 chr3 62477560 62477693 -165046885 + (TTCC)n Simple_repeat Simple_repeat 4 136 0 370 266 25 10 chr3 62478332 62478476 -165046102 - L1MEd LINE L1 -5055 1064 942 368 340 56 35 chr3 62478547 62478920 -165045658 - L1MEd LINE L1 -5315 804 424 385 345 35 40 chr3 62479161 62479387 -165045191 + MIR SINE MIR 24 248 -14 1910 218 3 0 chr3 62479412 62479775 -165044803 + MLT1A1 LTR MaLR 2 365 0 2292 100 3 10 chr3 62480390 62480699 -165043879 + AluSx SINE Alu 1 307 -5 813 238 8 50 chr3 62480997 62481237 -165043341 - L1ME3A LINE L1 -5 6165 5936 466 315 159 30 chr3 62481379 62481782 -165042796 - L2 LINE L2 -9 3263 2809 208 294 11 54 chr3 62481823 62481915 -165042663 - L2 LINE L2 -517 2797 2710 216 158 0 0 chr3 62482018 62482056 -165042522 + (CACG)n Simple_repeat Simple_repeat 4 41 0 435 327 62 22 chr3 62484247 62484473 -165040105 + MIR SINE MIR 16 250 -12 234 332 28 9 chr3 62487151 62487272 -165037306 - MIR SINE MIR -67 141 27 550 287 61 35 chr3 62487588 62487818 -165036760 + MIR SINE MIR 11 246 -16 233 303 67 34 chr3 62487848 62487937 -165036641 + L2 LINE L2 3171 3262 -10 210 143 0 0 chr3 62488612 62488647 -165035931 + (TA)n Simple_repeat Simple_repeat 1 35 0 354 111 93 0 chr3 62488665 62488967 -165035611 + (TA)n Simple_repeat Simple_repeat 1 330 0 621 312 55 28 chr3 62489072 62489434 -165035144 - L1ME3A LINE L1 -2133 5675 5304 281 229 0 29 chr3 62489595 62489665 -165034913 - L1ME4a LINE L1 -82 6039 5972 386 310 164 30 chr3 62489684 62489952 -165034626 - L1ME4a LINE L1 -196 5925 5622 1832 120 0 0 chr3 62491206 62491447 -165033131 + AluSx SINE Alu 3 243 -69 2436 91 0 0 chr3 62491497 62491805 -165032773 - AluSg SINE Alu -2 308 1 378 294 60 33 chr3 62491906 62492090 -165032488 + MER5A DNA MER1_type 1 189 0 503 218 0 0 chr3 62493630 62493731 -165030847 - MER103 DNA DNA -47 119 19 396 0 0 0 chr3 62493904 62493948 -165030630 + (TA)n Simple_repeat Simple_repeat 1 44 0 293 236 28 0 chr3 62494479 62494551 -165030027 - L1MC5 LINE L1 -57 7904 7831 2502 279 87 45 chr3 62494570 62494980 -165029598 - L1MC4a LINE L1 -886 6922 6531 1443 240 22 19 chr3 62494980 62495351 -165029227 - MLT1A2 LTR MaLR 0 374 3 2502 279 87 45 chr3 62495351 62495578 -165029000 - L1MC4a LINE L1 -1277 6531 6315 983 189 0 0 chr3 62495578 62495737 -165028841 + FRAM SINE Alu 1 159 -7 2502 279 87 45 chr3 62495737 62496588 -165027990 - L1MC4a LINE L1 -1493 6315 5370 2570 239 52 20 chr3 62496633 62497627 -165026951 - L1MC4a LINE L1 -2920 3226 2201 6504 237 62 51 chr3 62497658 62500094 -165024484 - L1ME1 LINE L1 -3 6163 3673 2235 105 0 3 chr3 62500094 62500389 -165024189 - AluSq SINE Alu -19 294 1 6504 237 62 51 chr3 62500389 62501124 -165023454 - L1ME1 LINE L1 -2493 3673 2948 42386 36 22 1 chr3 62501144 62507169 -165017409 - L1PA2 LINE L1 -4 6151 2 1733 248 30 83 chr3 62507178 62508018 -165016560 - L1ME1 LINE L1 -3204 2942 2148 427 272 56 0 chr3 62508014 62508057 -165016521 - L1MA10 LINE L1 0 6334 6292 * 944 211 34 62 chr3 62508057 62508380 -165016198 - L1ME1 LINE L1 -39 6196 5883 1026 263 82 35 chr3 62508387 62508927 -165015651 - L1ME1 LINE L1 -1538 4677 4113 766 236 85 7 chr3 62508929 62509222 -165015356 - L1ME1 LINE L1 -4124 2272 1957 592 265 23 102 chr3 62509240 62509950 -165014628 - L1ME1 LINE L1 -4956 1259 658 3673 203 29 1 chr3 62510144 62510906 -165013672 - L1 LINE L1 -1039 5176 4394 * 5235 161 14 16 chr3 62510902 62512031 -165012547 + L1MA7 LINE L1 5054 6185 -106 1179 84 17 2 chr3 62512033 62512332 -165012246 + THE1B LTR MaLR 1 364 0 344 214 0 0 chr3 62512347 62512436 -165012142 + L1MA7 LINE L1 6203 6291 0 24 53 0 0 chr3 62513644 62513682 -165010896 + AT_rich Low_complexity Low_complexity 1 38 0 381 241 231 0 chr3 62513823 62513931 -165010647 + MIR SINE MIR 17 149 -113 4095 185 107 5 chr3 62514435 62515185 -165009393 - LTR1B LTR ERV1 0 826 1 188 250 131 24 chr3 62515292 62515376 -165009202 + MIR SINE MIR 162 254 -8 225 196 0 0 chr3 62515378 62515429 -165009149 + (ATGGTG)n Simple_repeat Simple_repeat 5 55 0 460 260 147 0 chr3 62515527 62515677 -165008901 + MIR SINE MIR 91 262 0 295 214 0 0 chr3 62516528 62516584 -165007994 - MLT1K LTR MaLR -16 572 517 331 315 112 30 chr3 62516778 62516975 -165007603 - MLT1K LTR MaLR -343 245 33 1808 138 27 7 chr3 62517156 62517453 -165007125 - AluJo SINE Alu -9 303 1 478 219 178 14 chr3 62518223 62518369 -165006209 + MER5A DNA MER1_type 18 187 -2 303 245 36 161 chr3 62518386 62518578 -165006000 - MER5B DNA MER1_type -7 171 4 1787 257 88 40 chr3 62518902 62519761 -165004817 - MER45C DNA AcHobo 0 953 1 301 341 31 0 chr3 62520003 62520132 -165004446 - L1M4 LINE L1 -1988 4158 4026 882 173 7 0 chr3 62520564 62520714 -165003864 + FRAM SINE Alu 5 155 -21 345 169 22 11 chr3 62520724 62520813 -165003765 + GA-rich Low_complexity Low_complexity 1 90 0 273 269 50 43 chr3 62520866 62521007 -165003571 - L1M4 LINE L1 -2323 3823 3682 274 256 219 29 chr3 62522375 62522512 -165002066 + MIR SINE MIR 23 185 -77 217 232 105 42 chr3 62522512 62522607 -165001971 + MIR SINE MIR 101 201 -61 296 62 0 21 chr3 62522738 62522786 -165001792 + (CATA)n Simple_repeat Simple_repeat 2 48 0 186 43 0 0 chr3 62523057 62523080 -165001498 + (TTCCC)n Simple_repeat Simple_repeat 4 26 0 478 319 98 42 chr3 62523671 62524186 -165000392 - L1MC4a LINE L1 -347 5774 5340 545 289 80 30 chr3 62524254 62524690 -164999888 - L1MC4a LINE L1 -1458 4688 4231 315 305 33 46 chr3 62525081 62525232 -164999346 - L2 LINE L2 -2 3270 3122 723 243 25 67 chr3 62525258 62525542 -164999036 - L2 LINE L2 -1407 1907 1636 207 317 37 12 chr3 62525602 62525684 -164998894 - L2 LINE L2 -1765 1549 1466 22 35 0 0 chr3 62530842 62530871 -164993707 + AT_rich Low_complexity Low_complexity 1 29 0 379 281 139 67 chr3 62531167 62531569 -164993009 + L2 LINE L2 2288 2718 -596 371 235 221 27 chr3 62531625 62531691 -164992887 + MER5B DNA MER1_type 1 53 -125 2368 85 0 0 chr3 62531691 62531986 -164992592 + AluSx SINE Alu 1 295 -17 371 235 221 27 chr3 62531986 62532068 -164992510 + MER5B DNA MER1_type 53 178 0 555 298 135 13 chr3 62532076 62532498 -164992080 + L2 LINE L2 2792 3280 -33 683 305 9 5 chr3 62532563 62532776 -164991802 - MIR SINE MIR -34 228 15 1041 155 78 19 chr3 62534130 62534336 -164990242 + MER20 DNA MER1_type 1 218 -1 296 302 62 10 chr3 62534684 62534780 -164989798 + L2 LINE L2 3212 3312 -1 944 221 120 67 chr3 62535251 62535567 -164989011 - MER58B DNA MER1_type 0 341 9 313 285 49 24 chr3 62536487 62536610 -164987968 - MIR SINE MIR -124 138 13 1328 175 44 9 chr3 62536728 62536956 -164987622 + MER46A DNA MER2_type 1 236 0 25 0 0 0 chr3 62537943 62537968 -164986610 + AT_rich Low_complexity Low_complexity 1 25 0 419 311 26 0 chr3 62538272 62538423 -164986155 + MIR SINE MIR 52 206 -56 438 184 0 0 chr3 62538902 62538978 -164985600 - L1PB4 LINE L1 -4 6152 6077 2289 110 10 0 chr3 62539002 62539310 -164985268 - AluSq SINE Alu -2 311 1 196 314 74 86 chr3 62539792 62539967 -164984611 - MIR SINE MIR -54 208 36 1296 215 40 54 chr3 62540498 62540870 -164983708 - MLT1A2 LTR MaLR -4 370 4 202 208 0 38 chr3 62541053 62541106 -164983472 + (TAA)n Simple_repeat Simple_repeat 1 51 0 385 296 101 30 chr3 62541123 62541292 -164983286 - MIR SINE MIR -3 259 79 1970 301 93 36 chr3 62542042 62543548 -164981030 + L2 LINE L2 1068 2659 -655 251 184 40 64 chr3 62543668 62543793 -164980785 + L1MC5 LINE L1 7803 7924 -37 534 268 134 48 chr3 62543821 62544238 -164980340 + L2 LINE L2 2751 3228 -85 222 37 0 0 chr3 62544238 62544265 -164980313 + (CAAAA)n Simple_repeat Simple_repeat 4 30 0 534 268 134 48 chr3 62544265 62544312 -164980266 + L2 LINE L2 3228 3270 -43 209 316 53 0 chr3 62544366 62544442 -164980136 + MIR SINE MIR 88 167 -95 395 303 140 11 chr3 62544492 62544670 -164979908 - MIR SINE MIR -12 250 50 2048 156 0 0 chr3 62544863 62545158 -164979420 - AluJb SINE Alu -17 295 1 477 340 25 20 chr3 62545869 62546066 -164978512 + MIR SINE MIR 50 247 -15 2123 133 7 7 chr3 62546206 62546514 -164978064 + AluSx SINE Alu 3 310 -2 2319 109 0 0 chr3 62547386 62547688 -164976890 - AluSx SINE Alu -10 302 1 598 86 11 32 chr3 62547763 62547856 -164976722 - L1MB8 LINE L1 -1 6177 6087 4267 162 27 26 chr3 62547856 62548702 -164975876 - L1MB7 LINE L1 -148 6036 5188 544 271 120 0 chr3 62549201 62549393 -164975185 + MIR SINE MIR 48 262 0 25 65 0 0 chr3 62549393 62549439 -164975139 + AT_rich Low_complexity Low_complexity 1 46 0 204 355 0 27 chr3 62549759 62549869 -164974709 - MIR SINE MIR -140 122 16 192 125 0 0 chr3 62550674 62550706 -164973872 + (TC)n Simple_repeat Simple_repeat 1 32 0 395 234 124 87 chr3 62551231 62551441 -164973137 + L2 LINE L2 2749 2972 -300 1612 132 0 0 chr3 62551441 62551668 -164972910 - AluSc SINE Alu -82 227 1 395 234 124 87 chr3 62551668 62551755 -164972823 + L2 LINE L2 2972 3054 -218 236 262 34 107 chr3 62553605 62553677 -164970901 + L1ME4a LINE L1 5532 5589 -532 15031 24 6 1 chr3 62553677 62556103 -164968475 + L1PA4 LINE L1 3724 6153 -2 236 262 34 107 chr3 62556103 62556179 -164968399 + L1ME4a LINE L1 5589 5669 -452 663 285 99 29 chr3 62556682 62557065 -164967513 + L1ME4a LINE L1 5675 6084 -37 294 330 11 0 chr3 62557067 62557158 -164967420 - L2 LINE L2 -17 3255 3164 313 303 21 41 chr3 62557204 62557349 -164967229 + MLT1K LTR MaLR 7 148 -440 1713 184 85 3 chr3 62557354 62557685 -164966893 + MLT1A1 LTR MaLR 8 365 0 597 247 29 24 chr3 62557979 62558149 -164966429 + MLT1K LTR MaLR 416 586 -2 298 281 65 36 chr3 62558175 62558314 -164966264 + MIR3 SINE MIR 17 159 -49 2185 102 48 0 chr3 62559345 62559640 -164964938 - AluSc SINE Alu 0 309 1 1095 233 115 6 chr3 62559856 62560175 -164964403 - L1MC4 LINE L1 -91 7904 7575 440 291 108 13 chr3 62560185 62560343 -164964235 + MIR SINE MIR 20 192 -70 553 275 27 19 chr3 62561441 62561650 -164962928 - MIR3 SINE MIR -50 212 5 658 258 137 33 chr3 62562810 62563299 -164961279 - L1ME4a LINE L1 -5 6116 5577 2209 133 0 0 chr3 62564410 62564710 -164959868 - AluSx SINE Alu -12 300 1 887 277 157 43 chr3 62564833 62565303 -164959275 - MLT1K LTR MaLR -54 534 11 278 277 60 0 chr3 62565367 62565450 -164959128 - MIR SINE MIR -101 161 74 287 326 208 7 chr3 62566042 62566186 -164958392 + MIR SINE MIR 2 174 -88 184 264 57 0 chr3 62566219 62566272 -164958306 - L2 LINE L2 -17 3296 3241 468 238 20 0 chr3 62566545 62566646 -164957932 + MLT1H LTR MaLR 49 151 -398 324 267 13 97 chr3 62566756 62566954 -164957624 + L1ME3A LINE L1 1110 1294 -5112 1958 270 72 78 chr3 62566956 62567201 -164957377 + L1ME3A LINE L1 3848 4093 -2337 1932 135 32 0 chr3 62567201 62567483 -164957095 + AluSx SINE Alu 1 291 -21 1958 270 72 78 chr3 62567483 62569413 -164955165 + L1ME3A LINE L1 4093 5992 -438 2065 63 46 50 chr3 62569413 62569716 -164954862 - AluY SINE Alu -9 302 1 1958 270 72 78 chr3 62569716 62570147 -164954431 + L1ME3A LINE L1 5992 6424 -6 832 220 91 32 chr3 62570244 62570367 -164954211 - Charlie2 DNA MER1_type -19 2843 2729 2290 68 0 0 chr3 62570367 62570645 -164953933 + AluY SINE Alu 22 299 -12 832 220 91 32 chr3 62570645 62571034 -164953544 - Charlie2 DNA MER1_type -133 2729 2230 481 257 15 0 chr3 62571407 62571543 -164953035 + LTR16C LTR ERVL 341 478 -13 344 280 61 15 chr3 62571573 62571705 -164952873 - Charlie2 DNA MER1_type -2717 145 8 286 325 117 25 chr3 62571846 62571966 -164952612 + MIR3 SINE MIR 35 165 -43 1964 119 41 60 chr3 62572149 62572467 -164952111 + AluSx SINE Alu 1 312 0 229 343 0 0 chr3 62572720 62572790 -164951788 + L2 LINE L2 3201 3270 -2 230 329 0 0 chr3 62572863 62572933 -164951645 - Charlie4 DNA MER1_type 0 1961 1892 417 290 80 50 chr3 62573285 62573535 -164951043 + MIR SINE MIR 7 259 -3 461 350 59 43 chr3 62574259 62574631 -164949947 + L1ME LINE L1 5326 5703 -418 306 298 30 36 chr3 62574638 62574806 -164949772 + MER115 DNA AcHobo 33 199 -494 609 268 75 39 chr3 62574870 62575124 -164949454 + MER115 DNA AcHobo 431 693 0 381 349 0 9 chr3 62576738 62576844 -164947734 + MIR SINE MIR 78 182 -80 2147 127 0 3 chr3 62576866 62577166 -164947412 + AluSx SINE Alu 1 299 -13 249 93 56 0 chr3 62579163 62579217 -164945361 + (TA)n Simple_repeat Simple_repeat 2 58 0 24 0 0 0 chr3 62579487 62579511 -164945067 + AT_rich Low_complexity Low_complexity 1 24 0 1713 178 7 0 chr3 62580446 62580727 -164943851 - AluJb SINE Alu -29 283 1 971 238 17 10 chr3 62580901 62581191 -164943387 - MER33 DNA MER1_type 0 324 33 1269 110 57 114 chr3 62581221 62581328 -164943250 + L1PA16 LINE L1 5877 5989 -177 2260 136 0 0 chr3 62581328 62581636 -164942942 + AluSc SINE Alu 1 308 -1 1269 110 57 114 chr3 62581636 62581827 -164942751 + L1PA16 LINE L1 5989 6158 -8 415 282 72 39 chr3 62582913 62583097 -164941481 + MER5B DNA MER1_type 4 176 -2 2261 114 0 9 chr3 62584081 62584396 -164940182 + AluSx SINE Alu 1 312 0 278 247 161 11 chr3 62584955 62585048 -164939530 + L2 LINE L2 3201 3307 -6 225 0 0 0 chr3 62586413 62586438 -164938140 + (A)n Simple_repeat Simple_repeat 1 25 0 189 74 0 0 chr3 62587224 62587251 -164937327 + (TAAAAA)n Simple_repeat Simple_repeat 4 30 0 299 269 100 70 chr3 62587479 62587606 -164936972 + L1MC4 LINE L1 7316 7438 -604 2023 119 5 92 chr3 62587606 62587975 -164936603 + MER1B DNA MER1_type 1 337 0 299 269 100 70 chr3 62587975 62588041 -164936537 + L1MC4 LINE L1 7438 7501 -541 2152 102 0 24 chr3 62588041 62588334 -164936244 + AluSx SINE Alu 3 288 -24 306 0 0 0 chr3 62588337 62588371 -164936207 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 299 269 100 70 chr3 62588371 62588764 -164935814 + L1MC4 LINE L1 7502 8025 -17 1916 214 132 32 chr3 62589791 62590040 -164934538 - MLT1E2 LTR MaLR -8 618 395 1869 170 3 13 chr3 62590040 62590346 -164934232 - AluJo SINE Alu -9 303 1 1916 214 132 32 chr3 62590346 62590658 -164933920 - MLT1E2 LTR MaLR -231 395 1 1301 266 78 16 chr3 62590688 62591368 -164933210 + L1M4 LINE L1 3135 3856 -2290 40373 36 23 2 chr3 62591372 62597391 -164927187 + L1PA2 LINE L1 1 6151 -4 5817 237 63 51 chr3 62597411 62598146 -164926432 + L1ME1 LINE L1 2948 3673 -2493 2255 105 0 3 chr3 62598146 62598441 -164926137 + AluSq SINE Alu 1 294 -19 5817 237 63 51 chr3 62598441 62600820 -164923758 + L1ME1 LINE L1 3673 6108 -58 2353 239 52 20 chr3 62600907 62601901 -164922677 + L1MC4a LINE L1 2201 3226 -2920 2073 278 87 46 chr3 62601946 62602797 -164921781 + L1MC4a LINE L1 5370 6185 -1623 992 189 0 0 chr3 62602797 62602956 -164921622 - FRAM SINE Alu -7 159 1 2073 278 87 46 chr3 62602956 62603183 -164921395 + L1MC4a LINE L1 6185 6401 -1407 1419 232 27 22 chr3 62603183 62603553 -164921025 + MLT1A2 LTR MaLR 3 374 0 2073 278 87 46 chr3 62603553 62603937 -164920641 + L1MC4a LINE L1 6401 6893 -915 268 229 29 0 chr3 62603984 62604054 -164920524 + L1MC5 LINE L1 7833 7904 -57 216 0 0 0 chr3 62604585 62604609 -164919969 + (TA)n Simple_repeat Simple_repeat 1 24 0 490 208 0 0 chr3 62604782 62604883 -164919695 + MER103 DNA DNA 19 119 -47 404 301 60 27 chr3 62606423 62606606 -164917972 - MER5A DNA MER1_type 0 189 1 2049 124 7 3 chr3 62606707 62606998 -164917580 + AluSq SINE Alu 1 292 -21 286 104 0 0 chr3 62607001 62607049 -164917529 + L1MB4 LINE L1 6133 6180 0 1429 188 111 22 chr3 62607053 62607421 -164917157 + L1MD2 LINE L1 5896 6296 -63 264 338 81 0 chr3 62607464 62607610 -164916968 - MLT1I LTR MaLR -69 340 183 346 192 82 0 chr3 62607610 62607683 -164916895 - MER2 DNA MER2_type 0 345 267 2305 102 0 0 chr3 62607724 62608017 -164916561 + AluSx SINE Alu 1 293 -19 183 42 0 0 chr3 62608020 62608044 -164916534 + (TATAA)n Simple_repeat Simple_repeat 2 25 0 1176 150 0 0 chr3 62608045 62608238 -164916340 - MER2 DNA MER2_type -152 193 1 492 298 25 6 chr3 62608244 62608405 -164916173 - MLT1I LTR MaLR -231 178 15 754 259 99 35 chr3 62609043 62609360 -164915218 - L2 LINE L2 -557 2757 2411 723 176 0 22 chr3 62609360 62609496 -164915082 + FLAM_A SINE Alu 1 133 0 754 259 99 35 chr3 62609496 62609553 -164915025 - L2 LINE L2 -903 2411 2359 194 91 30 0 chr3 62609553 62609586 -164914992 + GA-rich Low_complexity Low_complexity 3 36 0 568 243 83 43 chr3 62609586 62609911 -164914667 + L1MC5 LINE L1 7559 7896 -65 619 261 249 42 chr3 62609949 62610454 -164914124 - L2 LINE L2 -840 2474 1865 487 52 0 0 chr3 62610938 62610996 -164913582 + MER30 DNA MER1_type 1 58 -172 417 235 20 0 chr3 62611037 62611135 -164913443 + L2 LINE L2 2038 2137 -1177 973 106 75 38 chr3 62611148 62611308 -164913270 + MER30 DNA MER1_type 65 230 0 803 222 57 17 chr3 62611921 62612097 -164912481 - MER58A DNA MER1_type -2 222 40 1973 159 0 3 chr3 62612110 62612418 -164912160 - AluJb SINE Alu -5 307 1 3337 163 95 5 chr3 62612429 62613102 -164911476 + L1MB7 LINE L1 5255 5988 -196 276 287 38 76 chr3 62614322 62614479 -164910099 + L2 LINE L2 2948 3098 -215 270 97 16 48 chr3 62614584 62614646 -164909932 + (TTCC)n Simple_repeat Simple_repeat 4 63 0 368 366 35 7 chr3 62616231 62616373 -164908205 - L2 LINE L2 0 3272 3127 259 280 89 120 chr3 62616643 62617047 -164907531 + MLT1K LTR MaLR 19 411 -177 405 0 0 0 chr3 62617047 62617092 -164907486 + (TG)n Simple_repeat Simple_repeat 1 45 0 259 280 89 120 chr3 62617092 62617112 -164907466 + MLT1K LTR MaLR 411 430 -158 25 65 0 0 chr3 62618084 62618130 -164906448 + AT_rich Low_complexity Low_complexity 1 46 0 1830 123 0 86 chr3 62618327 62618653 -164905925 + AluSx SINE Alu 1 298 -14 2158 70 0 143 chr3 62618861 62619218 -164905360 + AluSg1 SINE Alu 1 306 -3 324 324 56 0 chr3 62621180 62621288 -164903290 + L2 LINE L2 3155 3268 -4 182 315 134 8 chr3 62621270 62621397 -164903181 - MIR3 SINE MIR -31 177 35 * 206 267 33 0 chr3 62621697 62621757 -164902821 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 277 353 142 25 chr3 62621772 62621976 -164902602 - MIR SINE MIR -22 240 13 300 156 31 16 chr3 62622096 62622160 -164902418 + MIR SINE MIR 167 231 -31 190 162 0 54 chr3 62622134 62622171 -164902407 + L2 LINE L2 3210 3244 -28 * 604 204 15 15 chr3 62622344 62622476 -164902102 + L2 LINE L2 3178 3309 -4 286 307 15 58 chr3 62622527 62622664 -164901914 - MIR SINE MIR -118 144 14 426 262 86 52 chr3 62622801 62623011 -164901567 + MIR SINE MIR 14 230 -32 257 254 25 102 chr3 62623690 62623808 -164900770 - MIR3 SINE MIR -85 123 15 265 300 44 56 chr3 62624443 62624603 -164899975 + MIR3 SINE MIR 4 161 -47 558 251 68 58 chr3 62624603 62624898 -164899680 - MER102b DNA MER1_type -1 340 43 189 0 0 0 chr3 62625336 62625357 -164899221 + (T)n Simple_repeat Simple_repeat 1 21 0 251 261 51 47 chr3 62625416 62625579 -164898999 - MIR SINE MIR -69 139 21 387 56 0 0 chr3 62625790 62625844 -164898734 + (GA)n Simple_repeat Simple_repeat 2 55 0 408 290 160 48 chr3 62626068 62626337 -164898241 + L2 LINE L2 3015 3313 0 272 296 20 20 chr3 62626473 62626571 -164898007 - MIR SINE MIR -77 131 34 2510 77 0 0 chr3 62626603 62626913 -164897665 + AluY SINE Alu 1 310 -1 441 298 163 4 chr3 62627186 62627431 -164897147 + L2 LINE L2 2989 3272 -41 336 235 22 52 chr3 62628516 62628652 -164895926 + L1M4 LINE L1 3086 3217 -2929 612 176 7 59 chr3 62628694 62628830 -164895748 - MER3 DNA MER1_type -82 127 46 240 273 100 35 chr3 62628928 62629159 -164895419 + L1M4 LINE L1 3253 3498 -2648 198 0 0 0 chr3 62629182 62629204 -164895374 + (A)n Simple_repeat Simple_repeat 1 22 0 2364 97 7 0 chr3 62629593 62629903 -164894675 - AluSx SINE Alu 0 312 1 473 343 52 0 chr3 62630086 62630258 -164894320 - MIR SINE MIR -3 259 79 2607 47 0 0 chr3 62631320 62631618 -164892960 - AluY SINE Alu -13 298 1 2243 117 3 0 chr3 62631692 62632001 -164892577 - AluSx SINE Alu -2 310 1 285 274 97 24 chr3 62632388 62632512 -164892066 - MIR SINE MIR -113 149 17 194 237 119 17 chr3 62632931 62632990 -164891588 + L2 LINE L2 2989 3053 -219 3148 143 21 21 chr3 62633137 62633706 -164890872 - LTR10A LTR ERV1 -21 612 1 534 216 322 0 chr3 62633770 62633941 -164890637 - MIR SINE MIR 0 262 37 210 239 22 0 chr3 62635096 62635142 -164889436 + GA-rich Low_complexity Low_complexity 1 47 0 259 296 22 52 chr3 62635527 62635662 -164888916 + L1MC5 LINE L1 7740 7870 -91 1474 182 107 9 chr3 62635662 62635980 -164888598 + MLT2D LTR ERVL 1 349 -65 2147 124 0 6 chr3 62635985 62636299 -164888279 - AluSx SINE Alu 0 312 1 450 0 0 0 chr3 62636518 62636568 -164888010 + (TTA)n Simple_repeat Simple_repeat 2 51 0 242 308 41 41 chr3 62636661 62636833 -164887745 - L3 LINE CR1 -781 796 625 194 330 52 52 chr3 62637963 62638078 -164886500 + L2 LINE L2 3154 3268 -4 501 30 194 0 chr3 62639736 62639803 -164884775 - MADE1 DNA Mariner 0 80 1 621 310 28 21 chr3 62641042 62641332 -164883246 + L1MC4a LINE L1 5633 5924 -1884 185 167 83 0 chr3 62641791 62641839 -164882739 + L2 LINE L2 3261 3312 -1 13853 35 0 0 chr3 62642393 62644725 -164879853 + L1PA4 LINE L1 3819 6152 -3 415 277 15 0 chr3 62644764 62644894 -164879684 - L1M4 LINE L1 -1556 4590 4459 * 2978 236 41 44 chr3 62644882 62645852 -164878726 - L1M4 LINE L1 -2980 3166 2200 * 16177 189 62 23 chr3 62645846 62645971 -164878607 - L1MA7 LINE L1 0 6685 6566 2306 98 3 0 chr3 62645971 62646267 -164878311 - AluSp SINE Alu -16 297 1 16177 189 62 23 chr3 62646267 62651648 -164872930 - L1MA7 LINE L1 -119 6566 847 327 25 0 0 chr3 62651648 62651688 -164872890 + (TG)n Simple_repeat Simple_repeat 1 40 0 16177 189 62 23 chr3 62651688 62652570 -164872008 - L1MA7 LINE L1 -5838 847 1 228 380 16 0 chr3 62652875 62652996 -164871582 - L2 LINE L2 0 3272 3150 225 296 0 14 chr3 62653383 62653454 -164871124 - MIR SINE MIR -37 225 156 21 0 0 0 chr3 62653805 62653826 -164870752 + AT_rich Low_complexity Low_complexity 1 21 0 295 277 20 62 chr3 62653877 62654072 -164870506 + L1M4 LINE L1 2134 2320 -3826 626 257 85 64 chr3 62654171 62654921 -164869657 + L1M4 LINE L1 2474 3239 -2907 2054 138 3 3 chr3 62655247 62655551 -164869027 - AluSx SINE Alu -8 304 1 2072 99 0 17 chr3 62655807 62656100 -164868478 + L1MA2 LINE L1 6017 6304 0 23 0 0 0 chr3 62656100 62656123 -164868455 + AT_rich Low_complexity Low_complexity 1 23 0 254 239 35 26 chr3 62656132 62656245 -164868333 + L1M4 LINE L1 3929 4042 -2104 1920 161 0 13 chr3 62656341 62656651 -164867927 + AluSx SINE Alu 7 312 0 2030 127 7 23 chr3 62656767 62657075 -164867503 + AluSx SINE Alu 1 303 -9 660 309 83 26 chr3 62657197 62657808 -164866770 + L1M4 LINE L1 4515 5160 -986 647 209 82 32 chr3 62657849 62658007 -164866571 - MIR SINE MIR -83 179 14 555 117 0 0 chr3 62659212 62659289 -164865289 + MADE1 DNA Mariner 4 80 0 210 316 157 58 chr3 62659396 62659792 -164864786 - L2 LINE L2 -2 3270 2836 742 268 18 31 chr3 62660254 62660482 -164864096 - LTR16C LTR ERVL -98 393 169 483 269 106 92 chr3 62660781 62661491 -164863087 + L2 LINE L2 2369 3077 -195 2392 192 62 51 chr3 62661748 62662296 -164862282 + MLT2B3 LTR ERVL 1 554 0 369 306 89 45 chr3 62662854 62663301 -164861277 + L2 LINE L2 2232 2698 -616 217 192 0 39 chr3 62663317 62663369 -164861209 + GA-rich Low_complexity Low_complexity 2 51 0 423 241 162 11 chr3 62663863 62664054 -164860524 + LTR16C LTR ERVL 262 481 -10 5848 161 12 11 chr3 62664122 62666014 -164858564 - L1PB3 LINE L1 0 6154 4265 357 269 115 0 chr3 62666073 62666203 -164858375 - MIR SINE MIR -114 148 4 293 285 143 11 chr3 62666724 62666908 -164857670 - MIR SINE MIR -36 226 17 516 270 209 19 chr3 62667407 62667622 -164856956 + MIR SINE MIR 6 261 -1 2178 121 0 3 chr3 62667878 62668176 -164856402 - AluSc SINE Alu -12 297 1 617 151 151 25 chr3 62668176 62668295 -164856283 - FLAM_C SINE Alu -8 135 2 7348 64 2 14 chr3 62668697 62669852 -164854726 + L1PA12 LINE L1 5021 6168 0 538 268 27 7 chr3 62670010 62670154 -164854424 - MIR SINE MIR -62 146 45 2772 10 0 0 chr3 62670154 62670454 -164854124 + AluYa5 SINE Alu 1 300 -11 538 268 27 7 chr3 62670454 62670495 -164854083 - MIR SINE MIR -163 45 6 2437 206 72 25 chr3 62670896 62671426 -164853152 - MER74A LTR ERVL -3 555 1 339 25 0 0 chr3 62671491 62671531 -164853047 + (TGGA)n Simple_repeat Simple_repeat 2 41 0 21 36 0 0 chr3 62672385 62672413 -164852165 + AT_rich Low_complexity Low_complexity 1 28 0 306 0 0 0 chr3 62676395 62676429 -164848149 + (TG)n Simple_repeat Simple_repeat 2 35 0 2436 94 0 0 chr3 62677699 62678006 -164846572 + AluSx SINE Alu 1 307 -5 462 70 0 0 chr3 62678200 62678257 -164846321 - MER11D LTR ERVK 0 897 841 7512 60 28 0 chr3 62678269 62679142 -164845436 - MER11D LTR ERVK 0 897 1 4957 88 0 0 chr3 62679175 62679798 -164844780 - L1PA13 LINE L1 -19 6144 5522 756 286 24 40 chr3 62680434 62680686 -164843892 + MIR SINE MIR 12 259 -3 225 184 0 0 chr3 62680797 62680835 -164843743 + L2 LINE L2 3261 3298 -15 201 353 39 29 chr3 62681822 62681924 -164842654 + L2 LINE L2 3199 3301 -12 337 236 181 31 chr3 62682531 62682658 -164841920 - MIR SINE MIR -65 197 52 706 244 38 45 chr3 62683063 62683238 -164841340 + HAL1 LINE L1 1260 1434 -1073 240 59 0 0 chr3 62683238 62683272 -164841306 + (CA)n Simple_repeat Simple_repeat 2 35 0 706 244 38 45 chr3 62683272 62683387 -164841191 + HAL1 LINE L1 1434 1548 -959 954 242 106 75 chr3 62683396 62683544 -164841034 + HAL1 LINE L1 1945 2087 -420 2084 135 3 22 chr3 62683544 62683862 -164840716 + AluSx SINE Alu 1 312 0 954 242 106 75 chr3 62683862 62684259 -164840319 + HAL1 LINE L1 2087 2507 0 827 279 101 16 chr3 62684283 62684709 -164839869 - L1ME4a LINE L1 -26 6095 5634 21 36 0 0 chr3 62685083 62685111 -164839467 + AT_rich Low_complexity Low_complexity 1 28 0 506 304 77 55 chr3 62685508 62685912 -164838666 - L2 LINE L2 -20 3293 2881 558 273 32 62 chr3 62686129 62686362 -164838216 - MIR SINE MIR -34 228 2 1625 179 0 29 chr3 62686920 62687228 -164837350 + AluJo SINE Alu 14 312 0 1957 218 60 107 chr3 62687256 62687874 -164836704 + MLT1E LTR MaLR 1 589 -4 1506 200 7 37 chr3 62688843 62689143 -164835435 + AluJo SINE Alu 1 291 -11 398 216 128 16 chr3 62689195 62689320 -164835258 - MIR SINE MIR -60 202 64 23 0 0 0 chr3 62689686 62689709 -164834869 + AT_rich Low_complexity Low_complexity 1 23 0 321 208 0 0 chr3 62691606 62691683 -164832895 + CT-rich Low_complexity Low_complexity 2 78 0 2083 109 0 7 chr3 62691688 62691972 -164832606 - AluSx SINE Alu -8 304 23 3876 203 59 16 chr3 62692073 62693553 -164831025 - L1MD1 LINE L1 -116 6126 4598 43734 46 3 2 chr3 62693572 62699719 -164824859 + L1PA2 LINE L1 1 6155 0 884 229 20 20 chr3 62699722 62699971 -164824607 + L1M4 LINE L1 3840 4088 -2058 330 295 129 0 chr3 62703295 62703434 -164821144 + MIR SINE MIR 88 244 -18 413 277 84 32 chr3 62704280 62704435 -164820143 + MIR SINE MIR 99 261 -1 23 0 0 0 chr3 62704443 62704466 -164820112 + AT_rich Low_complexity Low_complexity 1 23 0 208 239 22 0 chr3 62704703 62704749 -164819829 - MIR SINE MIR -58 150 104 212 300 154 18 chr3 62704932 62705042 -164819536 + MER91A DNA MER1_type 71 195 -1 23 33 0 0 chr3 62705101 62705131 -164819447 + AT_rich Low_complexity Low_complexity 1 30 0 261 0 0 0 chr3 62705218 62705247 -164819331 + (TG)n Simple_repeat Simple_repeat 2 30 0 180 77 0 0 chr3 62706215 62706241 -164818337 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 242 297 109 24 chr3 62706280 62706445 -164818133 - L2 LINE L2 -223 3049 2871 548 301 25 6 chr3 62707502 62707665 -164816913 + MLT1I LTR MaLR 13 178 -231 1269 150 0 0 chr3 62707671 62707864 -164816714 + MER2 DNA MER2_type 1 193 -152 183 42 0 0 chr3 62707865 62707889 -164816689 + (TTATA)n Simple_repeat Simple_repeat 2 25 0 2272 102 0 3 chr3 62707892 62708186 -164816392 - AluSx SINE Alu -19 293 1 377 192 82 0 chr3 62708227 62708300 -164816278 + MER2 DNA MER2_type 267 345 0 308 338 81 0 chr3 62708300 62708446 -164816132 + MLT1I LTR MaLR 183 340 -69 3504 177 104 27 chr3 62708458 62708861 -164815717 - L1MD2 LINE L1 -13 6346 5976 587 86 0 129 chr3 62708861 62708912 -164815666 - L1MB4 LINE L1 0 6180 6151 2062 129 0 7 chr3 62708912 62709206 -164815372 - AluSq SINE Alu -21 292 1 587 86 0 129 chr3 62709206 62709270 -164815308 - L1MB4 LINE L1 -29 6151 6080 3504 177 104 27 chr3 62709270 62709617 -164814961 - L1MD2 LINE L1 -383 5976 5538 394 139 97 0 chr3 62709617 62709689 -164814889 + MLT1I LTR MaLR 331 409 0 219 322 22 56 chr3 62709793 62709883 -164814695 - L2 LINE L2 0 3272 3186 270 241 77 128 chr3 62710144 62710497 -164814081 - L2 LINE L2 -344 2970 2636 1601 213 53 23 chr3 62710871 62711240 -164813338 + MLT1A2 LTR MaLR 1 396 0 2061 283 123 29 chr3 62712262 62712811 -164811767 - L2 LINE L2 -3 3310 2814 1250 188 114 37 chr3 62712811 62713082 -164811496 + AluSx SINE Alu 1 292 -10 2061 283 123 29 chr3 62713082 62713644 -164810934 - L2 LINE L2 -499 2814 2097 233 279 144 18 chr3 62713907 62714018 -164810560 - L2 LINE L2 -9 3304 3180 235 371 93 0 chr3 62716563 62716714 -164807864 - MIR SINE MIR -87 175 11 186 330 73 110 chr3 62716843 62717198 -164807380 + L2 LINE L2 2926 3267 -5 570 258 99 28 chr3 62717531 62717713 -164806865 - MIR SINE MIR -55 207 13 274 297 31 39 chr3 62718864 62718992 -164805586 + MIR SINE MIR 116 242 -20 449 83 0 14 chr3 62720277 62720349 -164804229 + (TTCC)n Simple_repeat Simple_repeat 2 72 0 195 327 0 36 chr3 62720402 62720457 -164804121 - L2 LINE L2 -17 3255 3203 745 202 27 44 chr3 62720618 62720801 -164803777 + MIR SINE MIR 48 227 -35 408 296 113 26 chr3 62720828 62721058 -164803520 - L2 LINE L2 -218 3054 2805 193 250 58 0 chr3 62721415 62721467 -164803111 + MIR3 SINE MIR 148 202 -6 438 284 0 52 chr3 62721493 62721609 -164802969 - MIR SINE MIR -152 110 1 390 167 12 60 chr3 62723883 62723967 -164800611 + MIR SINE MIR 87 166 -96 844 236 50 5 chr3 62724158 62724357 -164800221 + MER3 DNA MER1_type 1 208 -1 658 229 56 78 chr3 62724800 62725031 -164799547 + MIR SINE MIR 13 238 -24 619 341 128 31 chr3 62725054 62725668 -164798910 - L2 LINE L2 0 3272 2590 234 240 0 0 chr3 62726993 62727043 -164797535 - L2 LINE L2 0 3313 3264 272 200 100 25 chr3 62727857 62727937 -164796641 + MIR SINE MIR 114 199 -63 575 256 17 17 chr3 62727956 62728128 -164796450 + L1ME1 LINE L1 5976 6147 -19 551 334 67 33 chr3 62728375 62728704 -164795874 + L2 LINE L2 2933 3272 0 277 253 13 13 chr3 62728776 62728851 -164795727 - MLT1K LTR MaLR -4 584 510 231 256 0 58 chr3 62728851 62728862 -164795716 - LTR67 LTR ERVL -4 553 473 2105 233 68 30 chr3 62729376 62729402 -164795176 + MLT1E LTR MaLR 74 98 -495 2287 99 0 16 chr3 62729402 62729705 -164794873 - AluSx SINE Alu -14 298 1 2105 233 68 30 chr3 62729705 62730177 -164794401 + MLT1E LTR MaLR 98 591 -2 231 362 39 8 chr3 62730809 62730936 -164793642 - MER5A DNA MER1_type -2 187 57 286 205 24 24 chr3 62731476 62731559 -164793019 + (CA)n Simple_repeat Simple_repeat 2 84 0 553 233 62 47 chr3 62732130 62732323 -164792255 - MIR SINE MIR -34 228 33 314 357 24 0 chr3 62732343 62732469 -164792109 + MIR SINE MIR 6 134 -128 2040 116 3 7 chr3 62732470 62732788 -164791790 + AluSx SINE Alu 1 317 0 233 326 98 0 chr3 62732798 62732930 -164791648 + MIR SINE MIR 118 262 0 * 533 246 14 22 chr3 62732905 62733043 -164791535 - MIR SINE MIR -89 173 37 2314 152 61 5 chr3 62733874 62734249 -164790329 - MSTD LTR MaLR 0 396 1 22 35 0 0 chr3 62734912 62734941 -164789637 + AT_rich Low_complexity Low_complexity 1 29 0 225 301 14 0 chr3 62737839 62737912 -164786666 + L2 LINE L2 2979 3052 -261 288 324 59 20 chr3 62737934 62738036 -164786542 + L2 LINE L2 3162 3267 -5 1712 55 0 0 chr3 62738859 62739060 -164785518 + AluY SINE Alu 110 310 -1 30 0 0 0 chr3 62739379 62739409 -164785169 + AT_rich Low_complexity Low_complexity 1 30 0 240 35 0 0 chr3 62741137 62741166 -164783412 + (CA)n Simple_repeat Simple_repeat 1 29 0 299 25 25 0 chr3 62743208 62743248 -164781330 + (GA)n Simple_repeat Simple_repeat 2 42 0 459 0 0 0 chr3 62743468 62743519 -164781059 + (TG)n Simple_repeat Simple_repeat 2 52 0 230 330 22 11 chr3 62743641 62743732 -164780846 - L2 LINE L2 -3 3269 3178 479 283 104 0 chr3 62745082 62745255 -164779323 + MER117 DNA MER1_type 3 193 -4 925 213 106 77 chr3 62745505 62745614 -164778964 + MSTD LTR MaLR 7 111 -285 2262 112 0 0 chr3 62745614 62745918 -164778660 - AluSc SINE Alu -5 304 1 925 213 106 77 chr3 62745918 62746184 -164778394 + MSTD LTR MaLR 111 393 -3 342 338 99 32 chr3 62746263 62746665 -164777913 - L2 LINE L2 -340 2974 2546 185 328 94 0 chr3 62747033 62747097 -164777481 - L3 LINE CR1 -5 1572 1503 727 270 6 6 chr3 62748354 62748528 -164776050 + MER5A DNA MER1_type 13 186 -3 193 260 20 0 chr3 62748941 62748991 -164775587 - MIR SINE MIR -99 163 113 1599 107 0 39 chr3 62749072 62749306 -164775272 + AluSq SINE Alu 69 293 -20 317 331 81 27 chr3 62749925 62750073 -164774505 + MIR SINE MIR 5 160 -102 264 200 0 0 chr3 62750073 62750128 -164774450 + (TG)n Simple_repeat Simple_repeat 2 56 0 1742 87 0 0 chr3 62750294 62750513 -164774065 + AluSg/x SINE Alu 94 312 0 7673 107 12 2 chr3 62750647 62751917 -164772661 - L1MA2 LINE L1 0 6304 5024 1848 181 21 0 chr3 62752088 62752464 -164772114 - Charlie5 DNA MER1_type 0 2616 2233 574 120 0 193 chr3 62752466 62752616 -164771962 - MER3 DNA MER1_type -41 168 48 2379 100 3 0 chr3 62752704 62753013 -164771565 + AluSx SINE Alu 1 310 -2 401 302 62 28 chr3 62753078 62753257 -164771321 + MIR SINE MIR 64 248 -14 421 244 8 65 chr3 62753463 62753586 -164770992 + L2 LINE L2 2909 3024 -248 206 272 48 13 chr3 62753752 62753883 -164770695 - MIR SINE MIR -52 210 9 635 280 54 46 chr3 62753908 62754279 -164770299 + MLT1J LTR MaLR 1 374 -137 1152 241 0 26 chr3 62754780 62755008 -164769570 + MER58A DNA MER1_type 1 222 -2 265 326 22 11 chr3 62755184 62755273 -164769305 - MIR SINE MIR -161 101 12 2104 107 0 17 chr3 62755377 62755667 -164768911 - AluSx SINE Alu -27 285 1 188 295 222 34 chr3 62756201 62756435 -164768143 + L3 LINE CR1 891 1168 -409 636 291 107 14 chr3 62756652 62757108 -164767470 - L2 LINE L2 -218 3054 2556 476 312 54 45 chr3 62757052 62757405 -164767173 + L3 LINE CR1 1151 1506 -71 * 414 217 66 66 chr3 62757456 62757622 -164766956 - MER103 DNA DNA 0 166 1 361 296 49 7 chr3 62757869 62758011 -164766567 + MIR SINE MIR 49 196 -66 391 249 34 112 chr3 62758093 62758298 -164766280 + MER5A DNA MER1_type 1 189 0 279 231 32 4 chr3 62759538 62759608 -164764970 + MIR SINE MIR 82 152 -56 307 317 0 10 chr3 62760657 62760758 -164763820 + GA-rich Low_complexity Low_complexity 5 104 0 439 83 214 0 chr3 62760761 62760845 -164763733 - ORSL DNA AcHobo -125 150 49 301 306 45 51 chr3 62762376 62762476 -164762102 + MIR SINE MIR 67 167 -95 2337 76 3 0 chr3 62762476 62762765 -164761813 - AluY SINE Alu -21 290 1 301 306 45 51 chr3 62762765 62762821 -164761757 + MIR SINE MIR 167 222 -40 1258 132 109 16 chr3 62764893 62765150 -164759428 - L1MD1 LINE L1 -8 6234 5954 1687 176 7 17 chr3 62765307 62765602 -164758976 + AluJo SINE Alu 1 292 -20 463 231 108 15 chr3 62765680 62765810 -164758768 - MIR SINE MIR -88 174 33 194 273 10 81 chr3 62766132 62766231 -164758347 + MER5A DNA MER1_type 39 130 -59 3047 105 35 7 chr3 62766366 62766759 -164757819 + MLT2A1 LTR ERVL 1 408 -36 432 0 0 0 chr3 62766759 62766807 -164757771 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 3047 105 35 7 chr3 62766807 62766842 -164757736 + MLT2A1 LTR ERVL 408 441 -3 28281 61 6 1 chr3 62766845 62770277 -164754301 + HERVL-A1 LTR ERVL 1 3449 -2205 235 250 62 16 chr3 62770294 62770358 -164754220 + MER5A DNA MER1_type 27 93 -96 424 155 0 21 chr3 62770559 62770656 -164753922 + GA-rich Low_complexity Low_complexity 5 99 0 206 214 36 0 chr3 62772534 62772590 -164751988 + (TA)n Simple_repeat Simple_repeat 2 59 0 281 284 21 21 chr3 62772675 62772770 -164751808 - L1ME LINE L1 -501 5620 5526 2145 148 47 33 chr3 62772801 62773160 -164751418 - THE1B LTR MaLR 0 364 1 21 0 0 0 chr3 62773302 62773323 -164751255 + AT_rich Low_complexity Low_complexity 1 21 0 181 356 55 0 chr3 62774032 62774105 -164750473 - L2 LINE L2 -7 3265 3189 276 250 125 0 chr3 62774497 62774585 -164749993 - L2 LINE L2 -18 3295 3197 2261 115 0 0 chr3 62774937 62775232 -164749346 - AluSc SINE Alu -10 299 5 213 262 24 24 chr3 62776972 62777056 -164747522 - MIR SINE MIR -105 157 74 23 68 0 0 chr3 62777420 62777464 -164747114 + AT_rich Low_complexity Low_complexity 1 44 0 1314 172 0 40 chr3 62779048 62779275 -164745303 - MER20 DNA MER1_type 0 219 2 224 260 0 0 chr3 62779854 62779904 -164744674 - MIR SINE MIR -12 250 201 1372 87 11 6 chr3 62780099 62780282 -164744296 + L1PB1 LINE L1 5967 6150 -1 23 0 0 0 chr3 62780282 62780305 -164744273 + AT_rich Low_complexity Low_complexity 1 23 0 199 262 58 68 chr3 62781167 62781270 -164743308 - L2 LINE L2 -10 3262 3161 804 270 106 3 chr3 62781276 62781569 -164743009 + MER5C DNA MER1_type 1 323 -1 21 0 0 0 chr3 62782750 62782771 -164741807 + AT_rich Low_complexity Low_complexity 1 21 0 2523 110 28 25 chr3 62782986 62783349 -164741229 - THE1B LTR MaLR 0 364 1 180 0 0 0 chr3 62783414 62783434 -164741144 + (TA)n Simple_repeat Simple_repeat 1 20 0 * 279 0 0 0 chr3 62783433 62783464 -164741114 + (CA)n Simple_repeat Simple_repeat 2 32 0 310 328 103 20 chr3 62783514 62783709 -164740869 + HAL1b LINE L1 245 455 -893 302 233 0 70 chr3 62783749 62783835 -164740743 + MIR SINE MIR 59 138 -124 2035 106 0 17 chr3 62784535 62784828 -164739750 + AluSc SINE Alu 21 308 -1 234 237 34 8 chr3 62784853 62784971 -164739607 + L1ME LINE L1 3122 3242 -2904 588 310 57 23 chr3 62784977 62785357 -164739221 + L1ME LINE L1 5286 5675 -446 389 227 41 21 chr3 62785513 62785610 -164738968 - L2 LINE L2 -12 3301 3203 261 296 22 37 chr3 62785650 62785785 -164738793 + HAL1b LINE L1 1211 1343 -5 2196 110 10 0 chr3 62786360 62786668 -164737910 - AluSq SINE Alu -2 311 1 967 262 73 11 chr3 62787253 62787528 -164737050 - MLT1J LTR MaLR -202 309 18 272 242 0 16 chr3 62787814 62787876 -164736702 + GA-rich Low_complexity Low_complexity 3 63 0 231 190 121 0 chr3 62788514 62788572 -164736006 + MER117 DNA MER1_type 85 149 -48 3004 240 50 25 chr3 62788710 62789123 -164735455 - MER21B LTR ERV1 -69 794 352 1763 168 70 24 chr3 62789123 62789451 -164735127 + MER61A LTR ERV1 1 343 0 3004 240 50 25 chr3 62789451 62789800 -164734778 - MER21B LTR ERV1 -511 352 13 591 314 18 9 chr3 62790057 62790277 -164734301 - MIR SINE MIR 0 262 41 418 276 16 31 chr3 62790944 62791071 -164733507 - L2 LINE L2 -15 3298 3174 274 301 21 0 chr3 62791960 62792053 -164732525 + GA-rich Low_complexity Low_complexity 4 98 0 1180 249 126 13 chr3 62792116 62792497 -164732081 + MLT1J2 LTR MaLR 1 424 -26 1217 209 4 9 chr3 62792788 62793013 -164731565 - MER58A DNA MER1_type 0 224 1 403 279 58 39 chr3 62793265 62793419 -164731159 + MIR SINE MIR 31 187 -75 571 301 165 41 chr3 62794567 62795177 -164729401 + L2 LINE L2 2368 3053 -219 2815 116 3 0 chr3 62795185 62795548 -164729030 + THE1B LTR MaLR 1 364 0 23 0 0 0 chr3 62796311 62796334 -164728244 + AT_rich Low_complexity Low_complexity 1 23 0 242 307 53 13 chr3 62797218 62797293 -164727285 + L2 LINE L2 3211 3288 -25 230 297 195 8 chr3 62797681 62797809 -164726769 + MIR SINE MIR 17 168 -94 481 298 146 0 chr3 62797812 62797970 -164726608 - MER5A DNA MER1_type 0 189 9 4044 151 102 7 chr3 62799396 62800150 -164724428 + LTR1B LTR ERV1 1 826 0 1058 157 0 0 chr3 62800990 62801149 -164723429 + AluJb SINE Alu 137 295 -17 3341 180 62 21 chr3 62801710 62802388 -164722190 - L1MB7 LINE L1 0 6184 5479 2255 118 50 22 chr3 62802766 62803129 -164721449 - THE1C LTR MaLR 0 375 3 558 295 74 29 chr3 62803607 62803851 -164720727 + MIR SINE MIR 2 256 -6 599 285 6 0 chr3 62803904 62804069 -164720509 - MIR SINE MIR -20 242 77 1357 201 83 40 chr3 62805060 62805556 -164719022 + MLT1E LTR MaLR 10 592 -1 404 311 106 42 chr3 62805569 62805955 -164718623 - L1MC/D LINE L1 -2085 5723 5313 1870 243 68 20 chr3 62806024 62806625 -164717953 - L1MC4 LINE L1 -653 7389 6760 395 277 50 0 chr3 62806639 62806740 -164717838 - L1ME1 LINE L1 -40 6126 6021 273 178 41 55 chr3 62806958 62807031 -164717547 + MIR SINE MIR 73 144 -118 335 301 158 6 chr3 62807047 62807230 -164717348 + L2 LINE L2 2488 2698 -616 6587 178 31 41 chr3 62807240 62808812 -164715766 + L1MA9 LINE L1 3937 5489 -679 2074 123 0 19 chr3 62808812 62809122 -164715456 + AluSg SINE Alu 1 304 -6 1322 231 57 48 chr3 62809122 62809563 -164715015 + L1MA9 LINE L1 5826 6273 -39 25 0 0 0 chr3 62809563 62809588 -164714990 + AT_rich Low_complexity Low_complexity 1 25 0 2438 91 0 3 chr3 62809591 62809899 -164714679 + AluSc SINE Alu 1 307 -2 180 233 96 41 chr3 62810375 62810448 -164714130 + MIR SINE MIR 160 236 -26 267 364 52 13 chr3 62810496 62810650 -164713928 + L2 LINE L2 3104 3263 -9 389 235 0 52 chr3 62810676 62810791 -164713787 + MIR SINE MIR 97 205 -57 641 296 100 17 chr3 62813379 62813670 -164710908 - L2 LINE L2 -2 3311 2997 1935 163 14 22 chr3 62814003 62814371 -164710207 - MLT1A1 LTR MaLR 0 365 1 1396 266 51 60 chr3 62815148 62816199 -164708379 - L2 LINE L2 0 3313 2286 2619 208 67 106 chr3 62816388 62817484 -164707094 + L1M4 LINE L1 2677 3729 -2417 259 239 0 45 chr3 62817469 62817557 -164707021 + L1MC4 LINE L1 6620 6703 -1339 * 642 240 50 28 chr3 62818351 62818530 -164706048 + MER5A DNA MER1_type 1 183 -6 513 253 124 13 chr3 62818916 62819149 -164705429 + MIR SINE MIR 4 262 0 321 276 127 79 chr3 62819245 62819600 -164704978 - MLT1K LTR MaLR -28 560 189 216 0 0 0 chr3 62820081 62820105 -164704473 + (TG)n Simple_repeat Simple_repeat 2 25 0 25 51 0 0 chr3 62821628 62821667 -164702911 + AT_rich Low_complexity Low_complexity 1 39 0 1951 105 12 0 chr3 62821675 62821932 -164702646 - AluSx SINE Alu -15 297 38 661 250 27 76 chr3 62822716 62822940 -164701638 - MIR SINE MIR 0 262 50 296 316 106 47 chr3 62826838 62826996 -164697582 + L2 LINE L2 2919 3066 -206 1413 174 0 0 chr3 62826996 62827220 -164697358 + MER58A DNA MER1_type 1 224 0 296 316 106 47 chr3 62827220 62827362 -164697216 + L2 LINE L2 3066 3237 -35 34 0 0 0 chr3 62827500 62827534 -164697044 + AT_rich Low_complexity Low_complexity 1 34 0 487 50 0 0 chr3 62827534 62827594 -164696984 - L1PA6 LINE L1 -6 6148 6089 310 273 55 9 chr3 62830055 62830165 -164694413 - MIR SINE MIR -120 142 28 1132 103 0 30 chr3 62830254 62830419 -164694159 - AluSg/x SINE Alu -19 293 134 532 269 21 7 chr3 62830612 62830757 -164693821 + MIR SINE MIR 34 180 -82 196 111 222 48 chr3 62831280 62831343 -164693235 - L2 LINE L2 -1 3271 3198 219 167 0 0 chr3 62831851 62831893 -164692685 + (TGGA)n Simple_repeat Simple_repeat 2 43 0 287 252 0 49 chr3 62832757 62832880 -164691698 + CT-rich Low_complexity Low_complexity 2 118 0 696 275 94 14 chr3 62833067 62833513 -164691065 + MLT1K LTR MaLR 31 543 -45 745 251 85 21 chr3 62833541 62833776 -164690802 + MLT1H LTR MaLR 42 291 -258 274 300 0 12 chr3 62833806 62833886 -164690692 + MLT1H LTR MaLR 375 453 -96 718 198 0 0 chr3 62833898 62834014 -164690564 - FLAM_C SINE Alu -25 118 3 486 200 11 11 chr3 62834019 62834114 -164690464 + MLT1H LTR MaLR 443 537 -12 978 236 10 5 chr3 62834282 62834490 -164690088 + MER3 DNA MER1_type 1 209 0 180 407 0 0 chr3 62834500 62834554 -164690024 + L2 LINE L2 3158 3211 -61 2276 121 22 22 chr3 62834788 62835152 -164689426 - THE1B LTR MaLR 0 364 1 641 290 27 35 chr3 62836232 62836491 -164688087 - MIR SINE MIR -1 261 5 259 256 26 0 chr3 62837187 62837265 -164687313 + MER116 DNA Mariner 1 80 0 224 239 45 0 chr3 62837266 62837333 -164687245 - MIR SINE MIR -50 212 143 305 287 65 9 chr3 62837345 62837453 -164687125 + L2 LINE L2 3196 3309 -4 679 175 6 6 chr3 62837459 62837619 -164686959 + (TGGA)n Simple_repeat Simple_repeat 4 163 0 370 231 17 0 chr3 62837633 62837750 -164686828 + (TGGA)n Simple_repeat Simple_repeat 1 119 0 188 244 0 0 chr3 62837767 62837812 -164686766 - MIR SINE MIR -171 91 47 198 0 0 0 chr3 62839780 62839802 -164684776 + (TTCA)n Simple_repeat Simple_repeat 3 24 0 232 340 32 0 chr3 62841339 62841433 -164683145 + MER5A DNA MER1_type 90 186 -3 203 125 0 50 chr3 62843163 62843203 -164681375 + (CAGAGA)n Simple_repeat Simple_repeat 3 40 0 463 267 91 45 chr3 62845490 62845711 -164678867 + MIR SINE MIR 32 262 0 2094 149 182 40 chr3 62846525 62846976 -164677602 + MLT2B2 LTR ERVL 1 515 0 277 194 65 16 chr3 62847084 62847146 -164677432 - MLT1I LTR MaLR 0 409 345 225 229 0 0 chr3 62847183 62847231 -164677347 - L1ME LINE L1 -535 5586 5539 380 176 59 12 chr3 62848574 62848659 -164675919 + MIR SINE MIR 82 170 -92 231 293 113 23 chr3 62848661 62848794 -164675784 - MER5A DNA MER1_type -1 188 44 220 261 151 17 chr3 62848697 62848816 -164675762 + MER5A DNA MER1_type 49 183 -6 * 205 125 0 100 chr3 62848863 62848903 -164675675 + L2 LINE L2 3220 3255 -17 261 261 130 0 chr3 62848940 62849032 -164675546 - L2 LINE L2 -33 3239 3136 761 261 19 14 chr3 62849190 62849397 -164675181 - MER63A DNA MER1_type 0 210 3 264 91 0 0 chr3 62850696 62850740 -164673838 + (TG)n Simple_repeat Simple_repeat 1 44 0 1166 208 53 0 chr3 62851312 62851731 -164672847 + L1MD2 LINE L1 5854 6345 -14 344 218 149 0 chr3 62851987 62852074 -164672504 - L2 LINE L2 -10 3262 3163 1795 226 28 24 chr3 62852442 62852551 -164672027 - MER63B DNA MER1_type -626 436 329 2460 50 7 3 chr3 62852551 62852852 -164671726 + AluY SINE Alu 1 302 -9 1795 226 28 24 chr3 62852852 62853166 -164671412 - MER63B DNA MER1_type -733 329 11 595 211 74 51 chr3 62854319 62854494 -164670084 + MLT1K LTR MaLR 376 554 -34 381 280 48 37 chr3 62854754 62854943 -164669635 + MIR SINE MIR 2 192 -70 248 318 119 34 chr3 62855009 62855184 -164669394 - MIR3 SINE MIR -63 145 13 390 21 0 0 chr3 62855194 62855241 -164669337 + (CA)n Simple_repeat Simple_repeat 2 48 0 461 218 224 6 chr3 62855618 62855725 -164668853 + HAL1 LINE L1 1309 1391 -1116 198 0 0 0 chr3 62855725 62855747 -164668831 + (GA)n Simple_repeat Simple_repeat 2 23 0 461 218 224 6 chr3 62855747 62855795 -164668783 + HAL1 LINE L1 1391 1498 -1009 195 331 96 6 chr3 62856647 62856804 -164667774 + L2 LINE L2 2839 3009 -263 674 189 53 63 chr3 62859003 62859193 -164665385 - MER5A DNA MER1_type 0 189 2 787 311 23 5 chr3 62859743 62859962 -164664616 + MER58A DNA MER1_type 2 224 0 636 122 0 0 chr3 62860027 62860125 -164664453 - L1MB3 LINE L1 -2 6181 6084 1459 114 17 191 chr3 62860142 62860292 -164664286 + THE1C LTR MaLR 35 209 -166 2259 101 0 0 chr3 62860292 62860580 -164663998 + AluY SINE Alu 1 288 -23 1459 114 17 191 chr3 62860580 62860599 -164663979 + THE1C LTR MaLR 209 230 -145 2774 52 0 0 chr3 62860599 62860942 -164663636 - L1PA3 LINE L1 0 6155 5813 1459 114 17 191 chr3 62860942 62861184 -164663394 + THE1C LTR MaLR 230 375 0 4681 184 30 13 chr3 62861185 62862918 -164661660 - L1MB3 LINE L1 -96 6087 4284 579 267 20 0 chr3 62862919 62863069 -164661509 - MIR SINE MIR -98 164 12 2183 134 40 12 chr3 62863391 62863720 -164660858 + MER1B DNA MER1_type 2 339 0 22 0 0 0 chr3 62864952 62864974 -164659604 + AT_rich Low_complexity Low_complexity 1 22 0 221 149 27 40 chr3 62865040 62865114 -164659464 + GA-rich Low_complexity Low_complexity 4 76 0 4388 73 0 0 chr3 62865133 62865679 -164658899 + MER41A LTR ERV1 1 546 -8 612 259 31 12 chr3 62866337 62866499 -164658079 + LTR33 LTR ERVL 14 178 -343 233 57 29 0 chr3 62866516 62866551 -164658027 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 385 318 102 46 chr3 62866660 62866943 -164657635 - L2 LINE L2 -618 2696 2398 347 320 105 81 chr3 62869420 62869801 -164654777 + L2 LINE L2 2883 3272 0 1128 284 39 32 chr3 62869928 62870383 -164654195 + MLT1K LTR MaLR 35 562 -26 216 86 0 0 chr3 62871181 62871216 -164653362 + (CA)n Simple_repeat Simple_repeat 1 35 0 564 156 125 0 chr3 62871692 62871788 -164652790 + Tigger3(Golem) DNA MER2_type 1 108 -2921 4171 100 69 45 chr3 62871788 62872516 -164652062 + Tigger3(Golem) DNA MER2_type 2284 3028 -1 455 335 57 16 chr3 62872652 62872846 -164651732 + MIR SINE MIR 9 210 -52 366 325 40 0 chr3 62873098 62873224 -164651354 + L2 LINE L2 3132 3262 -10 324 314 57 16 chr3 62873588 62873712 -164650866 - MER117 DNA MER1_type -48 149 21 853 296 125 40 chr3 62873764 62874292 -164650286 + MLT1K LTR MaLR 3 575 -13 459 0 0 0 chr3 62874379 62874430 -164650148 + (CA)n Simple_repeat Simple_repeat 1 51 0 617 299 60 40 chr3 62874821 62875122 -164649456 - L2 LINE L2 -2 3311 3005 284 139 111 14 chr3 62876137 62876209 -164648369 + MIR SINE MIR 78 156 -106 373 18 0 36 chr3 62876744 62876800 -164647778 + (CA)n Simple_repeat Simple_repeat 2 55 0 220 311 66 0 chr3 62876960 62877021 -164647557 - L2 LINE L2 -2 3270 3206 4366 234 105 35 chr3 62877392 62878629 -164645949 - L1MDb LINE L1 -5079 1330 7 211 358 37 0 chr3 62878702 62878783 -164645795 + L2 LINE L2 3230 3313 0 31 68 0 0 chr3 62879176 62879235 -164645343 + AT_rich Low_complexity Low_complexity 1 59 0 349 340 62 31 chr3 62880264 62880523 -164644055 + Charlie8 DNA MER1_type 1 267 -2150 2298 128 0 0 chr3 62880611 62880923 -164643655 - AluSx SINE Alu 0 312 1 440 247 110 36 chr3 62881101 62881320 -164643258 - MIR SINE MIR -8 254 20 934 206 80 5 chr3 62881476 62881614 -164642964 + MER20 DNA MER1_type 6 165 -54 1579 197 3 23 chr3 62881614 62881918 -164642660 + AluJo SINE Alu 1 298 -14 934 206 80 5 chr3 62881918 62881978 -164642600 + MER20 DNA MER1_type 165 219 0 2341 135 3 35 chr3 62882607 62882955 -164641623 + MER1B DNA MER1_type 1 337 0 635 224 41 14 chr3 62882978 62883125 -164641453 - MLT1K LTR MaLR -81 507 357 236 139 0 47 chr3 62883211 62883254 -164641324 - MLT1L LTR MaLR -404 211 171 528 251 69 25 chr3 62884318 62884521 -164640057 + L1ME2 LINE L1 985 1196 -4923 411 271 96 55 chr3 62884547 62884931 -164639647 + L1ME2 LINE L1 1327 1726 -4584 1410 267 125 58 chr3 62885491 62885637 -164638941 + L1ME2 LINE L1 2491 2626 -3503 1549 170 53 0 chr3 62885637 62885920 -164638658 + AluJb SINE Alu 1 298 -14 1410 267 125 58 chr3 62885920 62887109 -164637469 + L1ME2 LINE L1 2626 3915 -2214 820 261 100 72 chr3 62887373 62887994 -164636584 + L1ME2 LINE L1 5238 5887 -260 30 27 0 0 chr3 62888610 62888647 -164635931 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr3 62888682 62888714 -164635864 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr3 62888835 62888870 -164635708 + AT_rich Low_complexity Low_complexity 1 35 0 2001 157 0 0 chr3 62889094 62889393 -164635185 - AluSx SINE Alu -9 303 5 381 338 40 26 chr3 62889620 62889892 -164634686 + HAL1 LINE L1 1494 1769 -738 2493 186 26 2 chr3 62890752 62891221 -164633357 + L1MC3 LINE L1 7306 7785 0 2292 241 88 23 chr3 62891217 62892046 -164632532 + L1ME2 LINE L1 4352 5234 -895 * 908 186 0 13 chr3 62892053 62892209 -164632369 + FRAM SINE Alu 1 153 -23 2757 220 98 26 chr3 62892219 62892377 -164632201 + L1ME2 LINE L1 5252 5397 -750 2458 88 0 0 chr3 62892377 62892684 -164631894 + AluY SINE Alu 1 307 -4 2757 220 98 26 chr3 62892684 62893360 -164631218 + L1ME2 LINE L1 5397 6146 -1 368 304 93 57 chr3 62893380 62893754 -164630824 + L1ME LINE L1 2120 2479 -3667 1983 124 11 0 chr3 62893754 62894021 -164630557 + AluSx SINE Alu 27 296 -16 368 304 93 57 chr3 62894021 62894350 -164630228 + L1ME LINE L1 2479 2862 -3284 2002 92 6 79 chr3 62894350 62894665 -164629913 - AluSq SINE Alu -15 298 7 368 304 93 57 chr3 62894665 62894810 -164629768 + L1ME LINE L1 2862 3000 -3146 * 43570 46 12 2 chr3 62894807 62900899 -164623679 + L1PA4 LINE L1 3 6155 0 490 276 105 40 chr3 62901007 62901380 -164623198 + L1ME LINE L1 5039 5467 -695 1689 169 23 29 chr3 62901380 62901688 -164622890 + AluJo SINE Alu 1 306 -6 490 276 105 40 chr3 62901688 62901896 -164622682 + L1ME LINE L1 5467 5660 -502 21 36 0 0 chr3 62901958 62901986 -164622592 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr3 62902299 62902339 -164622239 + AT_rich Low_complexity Low_complexity 1 40 0 1510 306 116 31 chr3 62903156 62904315 -164620263 - L2 LINE L2 0 3313 2034 3586 107 19 6 chr3 62904622 62905163 -164619415 - L1PA14 LINE L1 -1338 4808 4261 6425 102 24 1 chr3 62905169 62906509 -164618069 + L1PA14 LINE L1 4815 6161 0 192 323 62 10 chr3 62906510 62906606 -164617972 + L3 LINE CR1 298 398 -1179 233 316 51 31 chr3 62907764 62907862 -164616716 - L2 LINE L2 -1 3312 3213 2222 95 20 0 chr3 62907862 62908158 -164616420 + L1PA8 LINE L1 5871 6172 0 218 283 0 17 chr3 62908263 62908323 -164616255 - L2 LINE L2 -82 3231 3173 197 217 65 0 chr3 62908591 62908637 -164615941 - L2 LINE L2 -2 3311 3263 282 256 105 12 chr3 62908707 62908793 -164615785 - MER91B DNA MER1_type -7 183 90 246 280 167 13 chr3 62909800 62909950 -164614628 + MER117 DNA MER1_type 23 195 -2 371 278 32 24 chr3 62911211 62911337 -164613241 - MIR SINE MIR -123 139 13 2300 103 3 0 chr3 62911822 62912123 -164612455 + AluSx SINE Alu 1 302 -10 423 313 97 11 chr3 62912332 62912508 -164612070 + MIR SINE MIR 41 231 -31 2036 178 25 3 chr3 62912508 62912863 -164611715 + MLT1A1 LTR MaLR 1 363 -2 353 287 56 48 chr3 62913647 62913984 -164610594 + MLT1K LTR MaLR 154 532 -56 402 319 132 6 chr3 62914512 62914694 -164609884 - MIR SINE MIR -55 207 3 2284 95 13 19 chr3 62914972 62915287 -164609291 - AluSq SINE Alu 0 313 1 539 102 11 0 chr3 62916826 62916914 -164607664 + (TA)n Simple_repeat Simple_repeat 2 90 0 506 342 76 17 chr3 62917277 62917514 -164607064 - MIR SINE MIR -4 258 8 209 320 143 5 chr3 62918228 62918409 -164606169 + MIR SINE MIR 2 206 -56 412 228 85 9 chr3 62919510 62919693 -164604885 - MER58 DNA MER1_type -5 2415 9 225 0 0 0 chr3 62920821 62920846 -164603732 + (A)n Simple_repeat Simple_repeat 1 25 0 273 321 73 0 chr3 62920853 62920962 -164603616 + MIR3 SINE MIR 47 163 -45 317 340 16 37 chr3 62920962 62921150 -164603428 + MER117 DNA MER1_type 4 187 -10 191 237 0 0 chr3 62921165 62921203 -164603375 + L3b LINE CR1 1534 1571 -12 220 311 22 0 chr3 62921749 62921839 -164602739 + MER5A DNA MER1_type 42 133 -56 205 227 118 109 chr3 62921786 62921896 -164602682 - MER5A DNA MER1_type -62 127 17 * 512 304 63 30 chr3 62921938 62922208 -164602370 + L2 LINE L2 3028 3306 -7 354 23 0 0 chr3 62922996 62923039 -164601539 + (CA)n Simple_repeat Simple_repeat 1 43 0 22 0 0 0 chr3 62923057 62923079 -164601499 + AT_rich Low_complexity Low_complexity 1 22 0 350 343 60 8 chr3 62923230 62923364 -164601214 + MIR3 SINE MIR 15 155 -53 367 223 19 10 chr3 62923536 62923639 -164600939 + MER113 DNA MER1_type? 119 222 -299 1464 286 130 30 chr3 62924189 62925475 -164599103 + L1MCc LINE L1 1282 2910 -4212 2126 132 7 3 chr3 62925581 62925885 -164598693 + AluSx SINE Alu 1 305 -7 1024 266 47 35 chr3 62925887 62926372 -164598206 + L1MCc LINE L1 3088 3578 -3363 550 208 0 0 chr3 62926372 62926473 -164598105 - MLT1H LTR MaLR 0 626 526 3666 215 116 3 chr3 62926480 62927500 -164597078 + L1P5 LINE L1 4358 5492 -664 660 241 43 37 chr3 62927563 62927840 -164596738 + L1ME3A LINE L1 5197 5472 -690 1260 283 66 16 chr3 62927843 62928341 -164596237 + L1ME3A LINE L1 5643 6165 -5 675 248 98 4 chr3 62928489 62928735 -164595843 + MER113 DNA MER1_type? 205 473 -48 1246 278 104 15 chr3 62929039 62929661 -164594917 + L2 LINE L2 2479 3156 -157 324 298 91 16 chr3 62930050 62930171 -164594407 - L2 LINE L2 -5 3267 3138 2098 115 0 10 chr3 62930514 62930810 -164593768 + AluSg SINE Alu 1 293 -17 492 287 51 37 chr3 62930873 62931089 -164593489 - MIR SINE MIR -19 243 25 1092 221 147 60 chr3 62931344 62931630 -164592948 - MLT1H LTR MaLR -46 503 171 2454 126 25 8 chr3 62931630 62931988 -164592590 + THE1B LTR MaLR 1 364 0 1092 221 147 60 chr3 62931988 62932103 -164592475 - MLT1H LTR MaLR -378 171 67 287 320 0 0 chr3 62932907 62933004 -164591574 + (TA)n Simple_repeat Simple_repeat 1 97 0 394 319 105 26 chr3 62933428 62933657 -164590921 + MIR SINE MIR 13 259 -3 354 41 0 0 chr3 62934139 62934188 -164590390 + AluSc SINE Alu 249 297 -2 1996 142 3 0 chr3 62935822 62936118 -164588460 + AluSx SINE Alu 9 305 -7 2273 92 7 0 chr3 62936683 62936977 -164587601 + AluY SINE Alu 1 296 -15 274 220 88 55 chr3 62937577 62937668 -164586910 + MIR SINE MIR 114 207 -55 276 259 19 56 chr3 62937691 62937799 -164586779 - MER94 DNA DNA -30 104 1 6632 72 56 1 chr3 62938420 62939704 -164584874 + L1PA11 LINE L1 4842 6173 -1 390 249 110 74 chr3 62940154 62940544 -164584034 - L1ME4a LINE L1 -2 6119 5716 248 314 58 0 chr3 62940560 62940646 -164583932 - L2 LINE L2 0 3272 3182 233 209 0 90 chr3 62940726 62940793 -164583785 - L1ME4a LINE L1 -555 5566 5506 919 274 9 9 chr3 62940969 62941195 -164583383 + MIR SINE MIR 21 246 -16 186 103 0 0 chr3 62942420 62942449 -164582129 + (TTCA)n Simple_repeat Simple_repeat 1 29 0 264 281 173 0 chr3 62942662 62942801 -164581777 - L1P4 LINE L1 -693 5481 5319 2262 113 7 0 chr3 62943710 62944020 -164580558 + AluSx SINE Alu 1 312 0 416 195 0 122 chr3 62944261 62944298 -164580280 - L2 LINE L2 -15 3298 3258 1538 173 88 0 chr3 62944298 62944570 -164580008 - AluJb SINE Alu -16 296 1 416 195 0 122 chr3 62944570 62944655 -164579923 - L2 LINE L2 -55 3258 3191 1083 248 84 13 chr3 62944658 62944968 -164579610 + MER58B DNA MER1_type 3 334 -7 206 163 143 0 chr3 62945118 62945167 -164579411 - L2 LINE L2 -337 2977 2922 1109 216 62 17 chr3 62945200 62945492 -164579086 + L1MA4 LINE L1 5982 6286 -14 637 299 119 18 chr3 62945526 62945854 -164578724 - L2 LINE L2 -719 2595 2235 314 320 90 8 chr3 62946660 62946782 -164577796 + MIR SINE MIR 20 151 -57 208 182 143 78 chr3 62946800 62946877 -164577701 - L2 LINE L2 -28 3244 3163 510 265 44 59 chr3 62946952 62947156 -164577422 - MIR SINE MIR -48 214 14 298 306 30 69 chr3 62947332 62947500 -164577078 - MIR3 SINE MIR -15 193 29 225 316 13 0 chr3 62947545 62947624 -164576954 - MIR SINE MIR -77 131 52 302 304 172 25 chr3 62947653 62947857 -164576721 + MIR SINE MIR 17 250 -12 258 208 21 0 chr3 62947870 62947918 -164576660 - MIR SINE MIR -10 252 204 205 307 57 23 chr3 62949003 62949091 -164575487 + L3 LINE CR1 1483 1573 -4 833 202 77 0 chr3 62949173 62949356 -164575222 - MIR SINE MIR -48 214 18 198 331 101 14 chr3 62949595 62949743 -164574835 + L2 LINE L2 2924 3084 -188 214 306 35 24 chr3 62949969 62950054 -164574524 + L2 LINE L2 2884 2969 -303 2047 125 3 10 chr3 62950067 62950363 -164574215 - AluSx SINE Alu -18 294 1 375 218 103 11 chr3 62950460 62950547 -164574031 + Charlie1 DNA MER1_type 2 96 -2665 180 231 0 0 chr3 62950571 62950610 -164573968 + L2 LINE L2 3274 3312 -1 322 345 136 14 chr3 62951231 62951451 -164573127 - MIR SINE MIR -12 250 4 1213 178 114 27 chr3 62952072 62952279 -164572299 + MER33 DNA MER1_type 1 243 -2342 2055 119 0 10 chr3 62952279 62952572 -164572006 - AluSx SINE Alu -16 296 7 1213 178 114 27 chr3 62952572 62952662 -164571916 + MER33 DNA MER1_type 243 324 0 425 234 207 28 chr3 62953509 62953654 -164570924 - MIR SINE MIR -72 190 20 507 247 139 24 chr3 62953673 62953839 -164570739 + MIR SINE MIR 40 224 -38 1639 217 11 39 chr3 62954036 62954268 -164570310 + MLT1A2 LTR MaLR 4 222 -152 1709 134 119 0 chr3 62954268 62954545 -164570033 + AluSx SINE Alu 1 310 -2 1639 217 11 39 chr3 62954545 62954694 -164569884 + MLT1A2 LTR MaLR 222 374 0 610 259 185 42 chr3 62955061 62955440 -164569138 - L1ME4a LINE L1 -66 6055 5623 316 277 207 11 chr3 62955806 62955994 -164568584 - MIR SINE MIR -7 255 31 29 28 0 0 chr3 62956235 62956271 -164568307 + AT_rich Low_complexity Low_complexity 1 36 0 311 279 116 117 chr3 62956918 62957232 -164567346 + L2 LINE L2 2772 3078 -194 2703 105 16 8 chr3 62957288 62957660 -164566918 - THE1C LTR MaLR 0 375 1 33 25 0 0 chr3 62957998 62958038 -164566540 + AT_rich Low_complexity Low_complexity 1 40 0 2209 122 0 0 chr3 62958227 62958560 -164566018 + AluSx SINE Alu 1 333 0 27 29 0 0 chr3 62958560 62958594 -164565984 + AT_rich Low_complexity Low_complexity 1 34 0 351 289 130 21 chr3 62958710 62958994 -164565584 + L1M4 LINE L1 2135 2449 -3697 3139 148 42 16 chr3 62960278 62960825 -164563753 - L1MB1 LINE L1 -2 6166 5606 334 346 33 7 chr3 62961009 62961162 -164563416 + MER5B DNA MER1_type 17 173 -5 908 178 130 0 chr3 62961662 62961847 -164562731 + MER3 DNA MER1_type 1 209 0 352 256 89 0 chr3 62961890 62961980 -164562598 - MIR SINE MIR -65 143 46 260 184 194 0 chr3 62962744 62962847 -164561731 + L2 LINE L2 3150 3272 0 462 238 116 12 chr3 62963149 62963217 -164561361 - MIR SINE MIR -1 261 201 232 263 26 26 chr3 62963217 62963293 -164561285 + MER39B LTR ERV1 291 366 -287 462 238 116 12 chr3 62963293 62963313 -164561265 - MIR SINE MIR -61 201 81 336 219 32 42 chr3 62963606 62963708 -164560870 - MIR SINE MIR -65 143 43 436 344 110 13 chr3 62963956 62964183 -164560395 + MIR SINE MIR 2 250 -12 324 200 13 27 chr3 62964224 62964299 -164560279 - MIR SINE MIR -110 152 79 355 304 159 24 chr3 62964757 62964964 -164559614 - MIR SINE MIR -20 242 8 1671 176 7 16 chr3 62965006 62965312 -164559266 - AluJo SINE Alu -7 305 3 877 265 194 42 chr3 62965393 62965887 -164558691 + MLT1G1 LTR MaLR 20 588 -7 301 293 196 0 chr3 62965894 62966027 -164558551 + MIR SINE MIR 95 253 -9 1606 183 7 0 chr3 62966420 62966710 -164557868 - AluJb SINE Alu -20 292 1 829 296 87 59 chr3 62966765 62967252 -164557326 + L2 LINE L2 2758 3253 -19 2071 116 43 32 chr3 62967257 62967628 -164556950 - THE1C LTR MaLR 0 375 1 218 292 28 0 chr3 62967701 62967773 -164556805 - MIR SINE MIR -75 133 60 877 269 99 36 chr3 62968066 62968430 -164556148 - MLT1J2 LTR MaLR 0 450 64 366 274 57 38 chr3 62968497 62968654 -164555924 + MIR SINE MIR 90 249 -13 260 211 47 94 chr3 62969160 62969288 -164555290 + MER103 DNA DNA 44 165 -1 1901 120 13 3 chr3 62969385 62969684 -164554894 - AluSp SINE Alu -11 302 1 238 354 48 14 chr3 62969814 62969961 -164554617 - MIR SINE MIR -52 210 59 261 220 0 0 chr3 62969980 62970030 -164554548 - L2 LINE L2 -1 3312 3263 1237 160 33 5 chr3 62970123 62970335 -164554243 + MER20 DNA MER1_type 1 218 -1 1018 221 135 33 chr3 62970361 62970664 -164553914 - MER102b DNA MER1_type -6 335 2 816 258 62 21 chr3 62970797 62971037 -164553541 - MIR SINE MIR -6 256 7 1160 175 65 0 chr3 62971195 62971395 -164553183 + MER20 DNA MER1_type 4 216 -3 25 0 0 0 chr3 62972293 62972318 -164552260 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr3 62972757 62972782 -164551796 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3 62974249 62974272 -164550306 + AT_rich Low_complexity Low_complexity 1 23 0 276 91 0 0 chr3 62974737 62974781 -164549797 + (TA)n Simple_repeat Simple_repeat 2 45 0 207 0 0 0 chr3 62975702 62975725 -164548853 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 28 0 0 0 chr3 62976022 62976050 -164548528 + AT_rich Low_complexity Low_complexity 1 28 0 537 253 69 11 chr3 62976992 62977166 -164547412 - MIR SINE MIR -56 206 23 240 258 62 41 chr3 62977167 62977264 -164547314 - MIR SINE MIR -158 104 6 377 297 160 6 chr3 62977266 62977441 -164547137 - MIR SINE MIR -26 236 35 436 343 99 0 chr3 62977481 62977682 -164546896 + MIR SINE MIR 16 236 -26 319 194 28 0 chr3 62978984 62979056 -164545522 - MER116 DNA Mariner -5 75 2 247 263 30 81 chr3 62979065 62979164 -164545414 - MIR SINE MIR -70 192 99 291 217 76 22 chr3 62979308 62979400 -164545178 + MIR3 SINE MIR 111 207 -1 253 292 10 21 chr3 62980160 62980256 -164544322 + GA-rich Low_complexity Low_complexity 5 99 0 182 206 16 0 chr3 62980272 62980335 -164544243 + GA-rich Low_complexity Low_complexity 1 64 0 444 281 12 12 chr3 62980810 62981073 -164543505 + G-rich Low_complexity Low_complexity 1 263 0 195 320 0 27 chr3 62982070 62982145 -164542433 + MIR3 SINE MIR 120 192 -16 21 0 0 0 chr3 62985402 62985423 -164539155 + AT_rich Low_complexity Low_complexity 1 21 0 249 265 0 15 chr3 62989002 62989070 -164535508 + (CA)n Simple_repeat Simple_repeat 1 67 0 440 18 18 0 chr3 62990805 62990862 -164533716 + (CA)n Simple_repeat Simple_repeat 2 59 0 252 302 35 35 chr3 62990980 62991096 -164533482 - MIR3 SINE MIR -51 157 42 204 97 0 0 chr3 62991606 62991637 -164532941 + (CA)n Simple_repeat Simple_repeat 2 32 0 211 174 65 22 chr3 62992693 62992739 -164531839 + L2 LINE L2 3262 3309 -4 251 111 0 22 chr3 62994524 62994569 -164530009 + (GAAA)n Simple_repeat Simple_repeat 4 47 0 351 65 0 0 chr3 62995398 62995444 -164529134 + (CA)n Simple_repeat Simple_repeat 2 47 0 266 240 93 0 chr3 62996509 62996584 -164527994 + MIR SINE MIR 12 93 -169 384 283 80 7 chr3 62997062 62997200 -164527378 + L2 LINE L2 3141 3288 -25 287 155 0 35 chr3 62998222 62998280 -164526298 - L1P LINE L1 -1207 4939 4884 477 313 71 27 chr3 62998394 62998618 -164525960 + MIR SINE MIR 28 261 -1 461 201 84 78 chr3 62998821 62998975 -164525603 - MIR SINE MIR -1 261 107 296 188 29 29 chr3 62999332 62999401 -164525177 + L2 LINE L2 2712 2780 -534 539 258 183 45 chr3 62999442 62999776 -164524802 + L2 LINE L2 2934 3313 0 23 0 0 0 chr3 63000292 63000315 -164524263 + AT_rich Low_complexity Low_complexity 1 23 0 350 32 0 145 chr3 63000622 63000661 -164523917 + MADE1 DNA Mariner 1 29 -51 2042 112 14 0 chr3 63000661 63000956 -164523622 - AluSq SINE Alu -14 299 1 350 32 0 145 chr3 63000956 63000978 -164523600 + MADE1 DNA Mariner 29 53 -27 26 30 0 0 chr3 63001135 63001168 -164523410 + AT_rich Low_complexity Low_complexity 1 33 0 4293 142 12 24 chr3 63001170 63001929 -164522649 - L1MA8 LINE L1 -1 6290 5541 215 256 0 0 chr3 63003213 63003256 -164521322 - L2 LINE L2 -5 3267 3225 420 271 45 0 chr3 63003710 63003843 -164520735 - MIR SINE MIR -43 219 81 242 279 15 36 chr3 63003895 63004017 -164520561 + GA-rich Low_complexity Low_complexity 1 119 0 324 331 81 8 chr3 63004443 63004567 -164520011 - L2 LINE L2 -36 3236 3104 592 333 106 53 chr3 63004691 63005126 -164519452 + MLT1K LTR MaLR 22 479 -109 2013 113 0 20 chr3 63005812 63006113 -164518465 + AluSx SINE Alu 1 295 -17 198 0 0 0 chr3 63006113 63006135 -164518443 + (TTAAA)n Simple_repeat Simple_repeat 3 24 0 255 260 156 52 chr3 63006160 63006256 -164518322 - L2 LINE L2 -4 3309 3204 298 340 11 11 chr3 63006679 63006773 -164517805 - MIR SINE MIR -144 118 25 397 318 12 41 chr3 63007091 63007261 -164517317 - MIR SINE MIR -46 216 52 325 256 156 78 chr3 63009430 63009610 -164514968 - MIR SINE MIR -12 250 57 275 279 0 0 chr3 63009613 63009681 -164514897 - Charlie8 DNA MER1_type -1001 1416 1349 1718 179 7 0 chr3 63009788 63010090 -164514488 + AluJo SINE Alu 1 304 -8 1934 134 13 3 chr3 63010113 63010418 -164514160 + AluSx SINE Alu 5 312 0 2067 92 24 3 chr3 63010591 63010883 -164513695 - AluSp SINE Alu -15 298 1 506 280 31 8 chr3 63010893 63011153 -164513425 - L1ME3A LINE L1 -7 6163 5820 2311 105 32 32 chr3 63011201 63011574 -164513004 - THE1C LTR MaLR -2 373 1 736 264 69 0 chr3 63012373 63012574 -164512004 + MIR SINE MIR 13 228 -34 508 247 19 26 chr3 63012612 63012766 -164511812 + MIR SINE MIR 107 259 -3 561 287 30 6 chr3 63013331 63013495 -164511083 + MIR3 SINE MIR 40 207 -1 285 258 32 32 chr3 63013920 63014013 -164510565 + MLT1K LTR MaLR 334 426 -162 239 271 13 13 chr3 63014023 63014178 -164510400 + GA-rich Low_complexity Low_complexity 1 155 0 291 269 11 32 chr3 63014249 63014342 -164510236 + MLT1K LTR MaLR 446 536 -52 326 298 18 9 chr3 63017641 63017755 -164506823 + L1ME4a LINE L1 5935 6049 -72 21 0 0 0 chr3 63019089 63019110 -164505468 + AT_rich Low_complexity Low_complexity 1 21 0 284 333 33 17 chr3 63019518 63019638 -164504940 + L2 LINE L2 2933 3054 -218 1771 164 0 3 chr3 63019763 63020055 -164504523 - AluJb SINE Alu -21 291 1 318 127 109 0 chr3 63020180 63020235 -164504343 + MLT1E2 LTR MaLR 159 219 -435 1267 182 24 4 chr3 63020241 63020488 -164504090 + AluJb SINE Alu 7 258 -54 26 36 0 0 chr3 63020560 63020588 -164503990 + AT_rich Low_complexity Low_complexity 1 28 0 1629 215 17 14 chr3 63020706 63021050 -164503528 + MLT1E2 LTR MaLR 282 626 0 504 275 34 28 chr3 63021050 63021228 -164503350 - L2 LINE L2 -28 3285 3107 1080 137 0 0 chr3 63021482 63021650 -164502928 - AluSg/x SINE Alu -8 302 135 231 336 93 31 chr3 63022918 63023144 -164501434 - MIR SINE MIR -2 260 21 2180 99 0 19 chr3 63023277 63023589 -164500989 + AluSx SINE Alu 1 306 -6 1139 181 19 5 chr3 63024089 63024305 -164500273 - MER20 DNA MER1_type 0 219 1 1587 166 6 72 chr3 63025869 63026201 -164498377 + AluJb SINE Alu 1 310 -2 1848 106 67 0 chr3 63026289 63026571 -164498007 + AluSx SINE Alu 1 301 -11 386 208 0 13 chr3 63026652 63026729 -164497849 - MER69 DNA AcHobo -2 2524 2449 * 477 278 15 0 chr3 63026725 63026858 -164497720 - MER69 DNA AcHobo -2380 146 12 180 111 0 0 chr3 63028580 63028607 -164495971 + (TTCC)n Simple_repeat Simple_repeat 1 27 0 393 291 54 7 chr3 63029493 63029641 -164494937 + L2 LINE L2 2905 3059 -213 226 256 88 64 chr3 63029791 63029916 -164494662 - LTR27 LTR ERV1 -114 522 395 264 214 0 18 chr3 63029962 63030018 -164494560 - MER20 DNA MER1_type 0 219 165 527 299 28 28 chr3 63030110 63030287 -164494291 + MIR SINE MIR 86 262 0 180 0 0 0 chr3 63030620 63030640 -164493938 + (T)n Simple_repeat Simple_repeat 1 20 0 422 344 65 46 chr3 63031370 63031830 -164492748 - L2 LINE L2 0 3272 2804 2279 171 28 24 chr3 63032003 63032460 -164492118 + MLT1C LTR MaLR 9 467 0 340 159 16 16 chr3 63033179 63033242 -164491336 + L2 LINE L2 3250 3312 -1 * 660 307 21 17 chr3 63033240 63033481 -164491097 + MIR SINE MIR 20 261 -1 350 291 46 40 chr3 63033631 63033782 -164490796 - MIR SINE MIR -70 192 41 300 236 113 38 chr3 63034070 63034176 -164490402 + MIR SINE MIR 99 212 -50 248 269 0 0 chr3 63034586 63034638 -164489940 - L2 LINE L2 -18 3254 3203 212 395 12 0 chr3 63034726 63034807 -164489771 - L2 LINE L2 -1 3312 3231 797 127 72 99 chr3 63034869 63035050 -164489528 - MER20 DNA MER1_type -43 176 1 466 261 54 0 chr3 63035974 63036103 -164488475 + MIR3 SINE MIR 25 161 -47 985 216 77 0 chr3 63036352 63036560 -164488018 - MER58A DNA MER1_type 0 224 1 196 338 0 26 chr3 63038319 63038396 -164486182 + MIR SINE MIR 40 114 -94 638 263 28 37 chr3 63038611 63038828 -164485750 - MIR SINE MIR 0 262 48 374 294 49 14 chr3 63038936 63039079 -164485499 - L2 LINE L2 -3 3310 3163 207 341 44 0 chr3 63039527 63039618 -164484960 - MIR SINE MIR -6 256 162 521 271 47 85 chr3 63040063 63040260 -164484318 + MIR SINE MIR 15 218 -44 1311 170 122 37 chr3 63040260 63040531 -164484047 + AluJo SINE Alu 5 298 -4 1662 162 21 7 chr3 63040531 63040821 -164483757 + AluJb SINE Alu 1 294 -18 521 271 47 85 chr3 63040821 63040880 -164483698 + MIR SINE MIR 216 262 0 2151 99 19 16 chr3 63041837 63042149 -164482429 + AluSq SINE Alu 1 313 0 572 302 59 62 chr3 63042335 63042640 -164481938 + L2 LINE L2 2967 3270 -2 2261 81 7 16 chr3 63045480 63045842 -164478736 - AluY SINE Alu 0 363 5 319 255 32 11 chr3 63045852 63045946 -164478632 - MER103 DNA DNA -67 99 4 29 0 0 0 chr3 63045976 63046005 -164478573 + AT_rich Low_complexity Low_complexity 1 29 0 223 285 37 4 chr3 63046128 63046189 -164478389 - MIR SINE MIR -69 139 84 494 323 19 6 chr3 63046627 63046785 -164477793 + MIR3 SINE MIR 34 193 -15 354 356 100 0 chr3 63048071 63048251 -164476327 - MIR SINE MIR -6 256 59 491 275 100 33 chr3 63051216 63051456 -164473122 + L2 LINE L2 2477 2732 -582 1055 239 117 33 chr3 63052344 63052738 -164471840 + L2 LINE L2 2883 3309 -4 225 325 72 0 chr3 63052786 63052869 -164471709 - MIR SINE MIR -60 148 60 457 262 86 52 chr3 63053063 63053273 -164471305 + MIR SINE MIR 14 230 -32 261 254 17 93 chr3 63053952 63054070 -164470508 - MIR3 SINE MIR -85 123 15 287 311 39 0 chr3 63054762 63054865 -164469713 + MIR3 SINE MIR 55 161 -47 570 251 68 58 chr3 63054865 63055160 -164469418 - MER102a DNA MER1_type -1 329 32 180 0 0 0 chr3 63055598 63055618 -164468960 + (T)n Simple_repeat Simple_repeat 1 20 0 269 252 49 77 chr3 63055636 63055841 -164468737 - MIR SINE MIR -46 216 18 381 22 0 0 chr3 63056051 63056097 -164468481 + (GA)n Simple_repeat Simple_repeat 2 47 0 447 295 153 39 chr3 63056309 63056590 -164467988 + L2 LINE L2 3001 3313 0 316 276 20 20 chr3 63056725 63056823 -164467755 - MIR SINE MIR -77 131 34 2523 62 0 0 chr3 63056855 63057164 -164467414 + AluY SINE Alu 1 309 -2 320 159 0 0 chr3 63057180 63057237 -164467341 - MLT2D LTR ERVL 0 397 350 303 224 15 15 chr3 63057261 63057328 -164467250 - L1MCa LINE L1 -4358 2068 2002 2075 125 0 0 chr3 63057362 63057673 -164466905 + AluSx SINE Alu 2 312 0 1479 182 107 9 chr3 63057680 63057998 -164466580 - MLT2D LTR ERVL -65 349 1 257 309 15 52 chr3 63057998 63058134 -164466444 - L1MC5 LINE L1 -91 7870 7740 24 32 0 0 chr3 63058938 63058969 -164465609 + AT_rich Low_complexity Low_complexity 1 31 0 2065 173 0 0 chr3 63059133 63059440 -164465138 - AluSg SINE Alu -3 307 1 241 247 13 78 chr3 63059495 63059572 -164465006 - MIR SINE MIR -39 223 152 2347 68 0 0 chr3 63059619 63059914 -164464664 + AluY SINE Alu 1 295 -16 260 220 40 60 chr3 63060006 63060106 -164464472 + L1ME4a LINE L1 5994 6091 -30 269 302 66 19 chr3 63060313 63060419 -164464159 + MIR3 SINE MIR 95 205 -3 273 313 107 0 chr3 63061666 63061778 -164462800 + MIR SINE MIR 8 131 -131 940 254 160 28 chr3 63062549 63062986 -164461592 + MLT1K LTR MaLR 81 575 -13 256 270 157 43 chr3 63063045 63063160 -164461418 - L2 LINE L2 -12 3260 3133 425 236 146 28 chr3 63063814 63064026 -164460552 + L2 LINE L2 2826 3062 -210 429 271 161 0 chr3 63064040 63064158 -164460420 + MIR SINE MIR 8 144 -118 256 314 83 58 chr3 63064309 63064430 -164460148 + L2 LINE L2 3134 3257 -15 686 239 51 0 chr3 63066275 63066413 -164458165 - MER58A DNA MER1_type 0 145 1 414 171 57 0 chr3 63066470 63066540 -164458038 - MER20 DNA MER1_type 0 219 146 * 1246 233 80 11 chr3 63066538 63066890 -164457688 + MLT1H1 LTR MaLR 177 552 -3 22 0 0 0 chr3 63067273 63067295 -164457283 + AT_rich Low_complexity Low_complexity 1 22 0 239 365 35 26 chr3 63067300 63067415 -164457163 + MIR SINE MIR 16 131 -77 1363 275 91 56 chr3 63067796 63068274 -164456304 + MLT1K LTR MaLR 16 517 -71 2150 100 0 3 chr3 63068274 63068573 -164456005 - AluSq SINE Alu -15 298 1 1363 275 91 56 chr3 63068573 63068646 -164455932 + MLT1K LTR MaLR 517 586 -2 308 305 38 0 chr3 63069557 63069662 -164454916 + MLT1K LTR MaLR 122 230 -358 186 71 0 0 chr3 63069698 63069726 -164454852 + (CAGAGA)n Simple_repeat Simple_repeat 2 29 0 434 238 87 58 chr3 63069893 63070065 -164454513 + MLT1K LTR MaLR 412 588 0 1343 269 62 44 chr3 63070643 63070965 -164453613 + MLT1J LTR MaLR 1 337 -174 1088 209 57 0 chr3 63070965 63071176 -164453402 - MER58A DNA MER1_type 0 224 2 1343 269 62 44 chr3 63071176 63071351 -164453227 + MLT1J LTR MaLR 337 507 -4 322 284 68 0 chr3 63072232 63072320 -164452258 + MIR SINE MIR 5 98 -164 272 250 12 62 chr3 63072370 63072450 -164452128 - L2 LINE L2 0 3313 3238 315 0 0 0 chr3 63072527 63072562 -164452016 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 1607 145 25 33 chr3 63072562 63072838 -164451740 - AluSx SINE Alu -32 280 7 1731 174 0 7 chr3 63072839 63073120 -164451458 - AluSx SINE Alu -33 279 1 476 288 293 12 chr3 63073148 63073798 -164450780 - L2 LINE L2 -36 3277 2445 24 32 0 0 chr3 63074177 63074208 -164450370 + AT_rich Low_complexity Low_complexity 1 31 0 1875 279 80 14 chr3 63074487 63075185 -164449393 + L2 LINE L2 2316 3052 -261 1955 138 20 7 chr3 63075975 63076279 -164448299 - AluSx SINE Alu -4 308 1 183 80 0 0 chr3 63076868 63076893 -164447685 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2297 78 7 7 chr3 63076965 63077271 -164447307 + AluSc SINE Alu 1 306 -3 301 326 12 12 chr3 63077279 63077365 -164447213 + L2 LINE L2 3134 3219 -53 2361 174 51 79 chr3 63077384 63077930 -164446648 + MER74A LTR ERVL 28 558 0 269 182 0 0 chr3 63077930 63077974 -164446604 + L2 LINE L2 3256 3299 -14 439 325 125 10 chr3 63078642 63078842 -164445736 - MIR SINE MIR -3 259 37 319 114 0 0 chr3 63079101 63079145 -164445433 + MIR SINE MIR 80 123 -139 573 245 73 13 chr3 63079347 63079498 -164445080 + MIR SINE MIR 95 254 -8 421 248 58 16 chr3 63080271 63080392 -164444186 - MIR SINE MIR -63 145 20 256 281 67 61 chr3 63080529 63080693 -164443885 + L3 LINE CR1 1406 1570 -7 * 353 256 80 73 chr3 63080661 63080798 -164443780 + MIR SINE MIR 57 194 -68 2016 128 0 13 chr3 63081124 63081437 -164443141 - AluSx SINE Alu -3 309 1 477 298 77 34 chr3 63081500 63081708 -164442870 + MIR SINE MIR 2 218 -44 503 216 48 71 chr3 63081944 63082120 -164442458 - MIR SINE MIR -28 234 64 2046 121 10 13 chr3 63082148 63082461 -164442117 + AluSq SINE Alu 1 312 -1 569 294 98 5 chr3 63082461 63082675 -164441903 - MIR SINE MIR -12 250 17 207 211 0 0 chr3 63084038 63084076 -164440502 - L2 LINE L2 -14 3299 3262 302 319 125 20 chr3 63084221 63084614 -164439964 + L2 LINE L2 2575 3073 -240 1921 187 55 119 chr3 63084729 63085316 -164439262 - MLT1H LTR MaLR 0 549 1 472 30 194 0 chr3 63086192 63086259 -164438319 - MADE1 DNA Mariner 0 80 1 1065 244 176 11 chr3 63086840 63087197 -164437381 - L2 LINE L2 -1 3312 2897 638 197 16 0 chr3 63087454 63087581 -164436997 - L2 LINE L2 -288 3025 2897 471 356 57 48 chr3 63088463 63088778 -164435800 + L2 LINE L2 2856 3173 -99 270 313 25 0 chr3 63089260 63089340 -164435238 + MIR SINE MIR 46 127 -135 464 280 165 28 chr3 63089361 63089579 -164434999 + MIR SINE MIR 4 251 -11 634 147 0 15 chr3 63089849 63089985 -164434593 + (TTCC)n Simple_repeat Simple_repeat 1 134 0 183 80 0 0 chr3 63090034 63090059 -164434519 + (TTCC)n Simple_repeat Simple_repeat 4 28 0 212 139 0 23 chr3 63090568 63090611 -164433967 + (GAAAA)n Simple_repeat Simple_repeat 4 45 0 708 74 0 0 chr3 63090624 63090719 -164433859 + (TTCC)n Simple_repeat Simple_repeat 4 98 0 538 267 167 14 chr3 63091030 63091240 -164433338 + MIR SINE MIR 9 250 -12 686 271 94 25 chr3 63091285 63091529 -164433049 + MIR SINE MIR 1 261 -1 364 328 30 0 chr3 63093899 63094033 -164430545 - L1ME4a LINE L1 -27 6094 5957 1157 125 49 0 chr3 63094275 63094459 -164430119 - AluSp SINE Alu -3 310 118 580 285 117 54 chr3 63094476 63094827 -164429751 - L1ME3A LINE L1 -284 5886 5514 455 298 36 28 chr3 63094876 63095070 -164429508 - MIR SINE MIR -16 246 49 391 218 164 9 chr3 63096110 63096220 -164428358 + MIR SINE MIR 23 149 -113 871 127 8 15 chr3 63096220 63096354 -164428224 + FLAM_C SINE Alu 1 133 0 559 296 69 0 chr3 63096476 63096635 -164427943 - MER91B DNA MER1_type -20 170 1 210 238 0 0 chr3 63096635 63096671 -164427907 + MIR SINE MIR 227 262 0 22 80 0 0 chr3 63097134 63097184 -164427394 + AT_rich Low_complexity Low_complexity 1 50 0 646 289 74 32 chr3 63097292 63097669 -164426909 + L1ME LINE L1 5406 5798 -323 2136 106 0 0 chr3 63097957 63098250 -164426328 - AluSg SINE Alu -17 293 1 309 109 0 0 chr3 63098691 63098737 -164425841 + (TG)n Simple_repeat Simple_repeat 1 46 0 428 198 74 41 chr3 63098913 63099034 -164425544 - MIR SINE MIR -90 172 48 342 247 34 11 chr3 63100095 63100184 -164424394 - L2 LINE L2 0 3272 3182 1626 179 0 7 chr3 63101592 63101903 -164422675 - AluSx SINE Alu 0 309 1 205 248 8 24 chr3 63101990 63102115 -164422463 + (CACCAT)n Simple_repeat Simple_repeat 6 128 0 498 335 24 0 chr3 63102120 63102287 -164422291 - MIR SINE MIR -12 250 80 295 251 104 47 chr3 63103372 63103420 -164421158 + L1M4 LINE L1 2141 2185 -3961 1696 175 14 0 chr3 63103420 63103712 -164420866 + AluJo SINE Alu 2 297 -15 295 251 104 47 chr3 63103712 63103874 -164420704 + L1M4 LINE L1 2185 2363 -3783 472 313 139 36 chr3 63103876 63104208 -164420370 + L1M4 LINE L1 2403 2768 -3378 2319 77 0 0 chr3 63104258 63104555 -164420023 + AluY SINE Alu 1 297 -14 308 337 167 16 chr3 63104643 63104889 -164419689 + L2 LINE L2 3026 3308 -5 486 329 24 0 chr3 63105473 63105640 -164418938 + MIR SINE MIR 81 251 -11 393 293 57 0 chr3 63106962 63107068 -164417510 + MIR SINE MIR 30 141 -67 182 266 202 21 chr3 63107917 63108011 -164416567 + MER5B DNA MER1_type 68 178 0 301 275 117 68 chr3 63108140 63108362 -164416216 - MER102b DNA MER1_type -3 338 106 788 201 30 24 chr3 63108804 63108968 -164415610 + AluJb SINE Alu 136 300 -12 183 289 0 0 chr3 63109047 63109092 -164415486 - MIR SINE MIR -2 260 216 2242 74 0 39 chr3 63110470 63110782 -164413796 + AluY SINE Alu 1 300 -11 649 274 31 26 chr3 63111634 63111860 -164412718 - L2 LINE L2 -401 2913 2687 756 238 11 32 chr3 63111984 63112173 -164412405 - MER5A DNA MER1_type 0 189 5 1428 161 76 14 chr3 63112222 63112513 -164412065 - AluJo SINE Alu -1 311 3 666 237 97 68 chr3 63114208 63114487 -164410091 - L2 LINE L2 0 3272 2986 423 265 54 49 chr3 63116324 63116528 -164408050 + MLT1K LTR MaLR 60 264 -324 204 122 0 0 chr3 63117163 63117204 -164407374 + (A)n Simple_repeat Simple_repeat 1 41 0 759 187 107 27 chr3 63117222 63117409 -164407169 - MER20 DNA MER1_type -1 218 17 1102 164 24 38 chr3 63117576 63117626 -164406952 + AluJb SINE Alu 78 127 -185 387 0 0 0 chr3 63117626 63117669 -164406909 + (CA)n Simple_repeat Simple_repeat 2 44 0 1102 164 24 38 chr3 63117669 63117831 -164406747 + AluJb SINE Alu 127 287 -25 530 274 17 17 chr3 63119803 63119978 -164404600 - L1MB8 LINE L1 0 6178 6004 422 115 77 26 chr3 63120067 63120145 -164404433 - MER53 DNA DNA -107 82 1 232 182 0 136 chr3 63120505 63120571 -164404007 - Charlie4 DNA MER1_type -6 1955 1899 2260 98 3 16 chr3 63120816 63121132 -164403446 + AluSx SINE Alu 1 312 0 323 291 119 33 chr3 63121840 63121991 -164402587 - MIR SINE MIR -91 171 8 233 175 38 12 chr3 63123619 63123699 -164400879 + (TA)n Simple_repeat Simple_repeat 2 83 0 524 219 118 21 chr3 63123764 63123951 -164400627 - MIR SINE MIR -30 232 28 388 249 176 24 chr3 63125636 63125841 -164398737 + L1ME4a LINE L1 5814 6049 -72 479 216 322 0 chr3 63130265 63130436 -164394142 + MIR SINE MIR 37 262 0 3117 146 21 21 chr3 63130500 63131069 -164393509 + LTR10A LTR ERV1 1 612 -21 250 274 97 24 chr3 63131694 63131818 -164392760 + MIR SINE MIR 17 149 -113 2263 116 3 0 chr3 63132205 63132515 -164392063 + AluSx SINE Alu 1 311 -1 2635 47 0 0 chr3 63132589 63132887 -164391691 + AluY SINE Alu 1 298 -13 442 337 52 0 chr3 63133950 63134122 -164390456 + MIR SINE MIR 79 259 -3 2426 90 7 0 chr3 63134305 63134615 -164389963 + AluSx SINE Alu 1 312 0 198 0 0 0 chr3 63135003 63135025 -164389553 + (T)n Simple_repeat Simple_repeat 1 22 0 227 268 100 35 chr3 63135048 63135279 -164389299 - L1M4 LINE L1 -2648 3498 3253 608 176 7 59 chr3 63135377 63135513 -164389065 + MER3 DNA MER1_type 46 127 -82 317 235 22 52 chr3 63135555 63135691 -164388887 - L1M4 LINE L1 -2929 3217 3086 371 282 180 20 chr3 63136760 63137005 -164387573 - L2 LINE L2 -41 3272 2989 2322 81 3 0 chr3 63137279 63137588 -164386990 - AluSp SINE Alu 0 310 1 510 333 0 5 chr3 63138997 63139186 -164385392 - MIR SINE MIR -52 210 23 211 158 18 18 chr3 63139914 63139971 -164384607 + GA-rich Low_complexity Low_complexity 1 57 0 229 262 16 0 chr3 63140239 63140300 -164384278 + L2 LINE L2 3249 3310 -3 237 294 15 0 chr3 63140353 63140421 -164384157 + L2 LINE L2 3245 3313 0 202 209 0 23 chr3 63140607 63140650 -164383928 + L2 LINE L2 3132 3173 -99 514 252 8 0 chr3 63140739 63140858 -164383720 - L2 LINE L2 -1 3312 3193 2148 103 13 13 chr3 63142000 63142302 -164382276 - AluSc SINE Alu -7 302 1 2105 135 26 0 chr3 63142506 63142810 -164381768 - AluSx SINE Alu 0 312 1 2137 90 17 14 chr3 63142962 63143295 -164381283 - AluSx SINE Alu 0 312 1 426 286 43 12 chr3 63143413 63143574 -164381004 + MIR SINE MIR 16 181 -81 1168 179 37 9 chr3 63143717 63143935 -164380643 - MER58A DNA MER1_type 0 224 1 450 280 47 31 chr3 63144968 63145161 -164379417 - MIR SINE MIR -48 214 19 204 184 61 0 chr3 63146628 63146677 -164377901 + L2 LINE L2 3261 3312 -1 795 304 66 47 chr3 63148020 63148385 -164376193 + MLT1K LTR MaLR 143 514 -74 2161 141 0 0 chr3 63148387 63148699 -164375879 + AluSx SINE Alu 1 312 0 241 222 0 0 chr3 63149071 63149116 -164375462 - MLT1J2 LTR MaLR -304 146 102 212 242 121 0 chr3 63149170 63149236 -164375342 + L2 LINE L2 3198 3271 -1 2037 137 23 3 chr3 63149442 63149748 -164374830 - AluSx SINE Alu 0 312 1 772 247 0 0 chr3 63150629 63150795 -164373783 + MIR SINE MIR 73 238 -24 23 54 0 0 chr3 63150919 63150956 -164373622 + AT_rich Low_complexity Low_complexity 1 37 0 298 282 43 17 chr3 63151219 63151336 -164373242 + MIR SINE MIR 38 157 -105 313 298 113 13 chr3 63151596 63151747 -164372831 + MIR SINE MIR 86 251 -11 25 0 0 0 chr3 63152280 63152305 -164372273 + AT_rich Low_complexity Low_complexity 1 25 0 191 267 0 33 chr3 63153707 63153767 -164370811 - MIR SINE MIR -25 237 180 557 244 15 8 chr3 63153792 63153923 -164370655 + L2 LINE L2 3182 3313 0 359 218 10 59 chr3 63153925 63154026 -164370552 - MIR SINE MIR -115 147 52 210 245 0 0 chr3 63154083 63154136 -164370442 + (CA)n Simple_repeat Simple_repeat 2 54 0 180 179 0 0 chr3 63155238 63155277 -164369301 + (TTCA)n Simple_repeat Simple_repeat 2 40 0 484 351 29 8 chr3 63155353 63155595 -164368983 + MIR SINE MIR 2 248 -14 393 128 51 26 chr3 63156272 63156350 -164368228 - MER103 DNA DNA -44 122 43 2357 96 0 3 chr3 63156378 63156679 -164367899 - AluSg SINE Alu -10 300 1 188 359 28 28 chr3 63156707 63156852 -164367726 - MIR3 SINE MIR -50 158 14 378 275 103 55 chr3 63157548 63157821 -164366757 + L2 LINE L2 3027 3312 -1 2053 113 0 50 chr3 63157961 63158280 -164366298 - AluSx SINE Alu -9 303 1 203 281 148 47 chr3 63158617 63158745 -164365833 + MIR3 SINE MIR 48 188 -20 318 270 57 63 chr3 63159612 63159711 -164364867 - MIR SINE MIR -2 260 161 2034 116 48 7 chr3 63159711 63160003 -164364575 + AluSg SINE Alu 1 304 -6 318 270 57 63 chr3 63160003 63160062 -164364516 - MIR SINE MIR -101 161 103 450 0 0 0 chr3 63160684 63160734 -164363844 + (TG)n Simple_repeat Simple_repeat 2 51 0 1222 255 91 50 chr3 63162001 63162464 -164362114 + LTR16C LTR ERVL 8 489 -2 437 205 186 32 chr3 63162548 63162704 -164361874 + Charlie8 DNA MER1_type 42 221 -2196 359 280 85 26 chr3 63162945 63163134 -164361444 - MIR SINE MIR -7 255 56 243 0 0 0 chr3 63163218 63163245 -164361333 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1609 149 7 68 chr3 63163267 63163575 -164361003 - AluJo SINE Alu -21 291 3 1945 164 0 13 chr3 63164571 63164875 -164359703 - AluJb SINE Alu -8 304 5 290 306 109 7 chr3 63164877 63165024 -164359554 + MIR SINE MIR 89 250 -12 1336 256 48 94 chr3 63165179 63165745 -164358833 - MLT1K LTR MaLR -44 544 5 209 277 30 50 chr3 63166904 63167005 -164357573 + L2 LINE L2 2941 3039 -233 200 373 55 0 chr3 63167141 63167251 -164357327 + L2 LINE L2 3197 3312 -1 533 277 9 61 chr3 63167872 63168085 -164356493 + MIR SINE MIR 49 250 -12 1540 232 86 70 chr3 63168210 63168826 -164355752 - MLT1E2 LTR MaLR 0 626 1 749 286 28 21 chr3 63169332 63169622 -164354956 + L1MC4a LINE L1 5633 5924 -1884 191 158 26 0 chr3 63170079 63170117 -164354461 + L2 LINE L2 3261 3299 -14 206 270 48 0 chr3 63170484 63170547 -164354031 + MIR3 SINE MIR 128 193 -15 246 200 0 0 chr3 63171166 63171211 -164353367 + MER5A DNA MER1_type 9 53 -136 309 172 16 16 chr3 63171300 63171364 -164353214 + MER5A DNA MER1_type 46 109 -80 2105 146 42 17 chr3 63172454 63172810 -164351768 + MLT1C LTR MaLR 1 365 -102 385 297 9 0 chr3 63172982 63173093 -164351485 - MIR SINE MIR -125 137 26 494 227 80 18 chr3 63173188 63173351 -164351227 - MIR SINE MIR -81 181 9 1123 143 30 78 chr3 63173666 63173896 -164350682 + MER20 DNA MER1_type 1 219 0 369 345 0 7 chr3 63173900 63174045 -164350533 + MIR SINE MIR 21 164 -98 243 286 0 0 chr3 63174372 63174442 -164350136 + MIR SINE MIR 152 221 -41 541 344 5 9 chr3 63174767 63174991 -164349587 - MIR SINE MIR -19 243 21 903 151 38 75 chr3 63174995 63175181 -164349397 - MER20 DNA MER1_type 0 219 41 24 0 0 0 chr3 63175232 63175256 -164349322 + AT_rich Low_complexity Low_complexity 1 24 0 225 118 0 0 chr3 63176016 63176050 -164348528 + L2 LINE L2 3271 3304 -9 598 233 34 64 chr3 63177122 63177358 -164347220 - MIR SINE MIR 0 262 34 607 254 16 11 chr3 63177666 63177851 -164346727 + MIR SINE MIR 31 216 -46 1525 245 35 16 chr3 63177852 63178219 -164346359 + Cheshire DNA MER1_type 3 376 -2044 * 1620 144 64 28 chr3 63178216 63178543 -164346035 + Cheshire DNA MER1_type 2052 2390 -30 488 174 12 0 chr3 63179061 63179147 -164345431 - MER103 DNA DNA -72 94 8 1321 199 40 27 chr3 63179180 63179476 -164345102 + AluJo SINE Alu 1 300 -12 2478 82 0 0 chr3 63180422 63180725 -164343853 + AluSc SINE Alu 1 303 -6 207 0 0 0 chr3 63180924 63180947 -164343631 + (T)n Simple_repeat Simple_repeat 1 23 0 196 290 0 43 chr3 63181361 63181430 -164343148 - MIR SINE MIR -188 74 9 2309 118 0 6 chr3 63182995 63183342 -164341236 - AluSp SINE Alu 0 345 1 342 0 0 0 chr3 63183561 63183599 -164340979 + (TTA)n Simple_repeat Simple_repeat 2 39 0 243 309 11 11 chr3 63183771 63183865 -164340713 - L3 LINE CR1 -859 718 625 699 324 86 12 chr3 63185885 63186314 -164338264 + L2 LINE L2 2385 2845 -469 223 346 25 0 chr3 63186612 63186693 -164337885 + L2 LINE L2 3137 3219 -53 260 137 20 0 chr3 63186712 63186763 -164337815 + (TGAA)n Simple_repeat Simple_repeat 1 52 0 753 246 17 0 chr3 63187996 63188171 -164336407 - MER45A DNA AcHobo 0 178 1 276 30 0 0 chr3 63191427 63191460 -164333118 + (CA)n Simple_repeat Simple_repeat 2 34 0 466 152 13 0 chr3 63192097 63192176 -164332402 + MER116 DNA Mariner 1 80 0 747 187 20 0 chr3 63192217 63192367 -164332211 + Charlie4 DNA MER1_type 1809 1961 0 188 339 9 36 chr3 63195455 63195567 -164329011 - MIR SINE MIR -122 140 32 1102 43 0 29 chr3 63196805 63196945 -164327633 + AluSp/q SINE Alu 176 311 -2 261 0 0 0 chr3 63198664 63198693 -164325885 + (A)n Simple_repeat Simple_repeat 1 29 0 261 0 0 0 chr3 63198693 63198722 -164325856 + (TA)n Simple_repeat Simple_repeat 2 30 0 219 213 21 0 chr3 63198912 63198967 -164325611 + (TA)n Simple_repeat Simple_repeat 1 56 0 2384 102 0 0 chr3 63200823 63201127 -164323451 - AluSq SINE Alu -8 305 2 220 188 21 0 chr3 63201453 63201501 -164323077 - L2 LINE L2 -5 3267 3219 401 306 12 6 chr3 63202964 63203124 -164321454 + MER103 DNA DNA 4 164 -2 210 71 0 0 chr3 63205095 63205123 -164319455 + (TGG)n Simple_repeat Simple_repeat 2 29 0 294 95 0 0 chr3 63206547 63206589 -164317989 + (ATGGTG)n Simple_repeat Simple_repeat 2 43 0 405 316 47 26 chr3 63207471 63207664 -164316914 + MIR SINE MIR 32 228 -34 21 0 0 0 chr3 63209653 63209674 -164314904 + AT_rich Low_complexity Low_complexity 1 21 0 215 355 44 77 chr3 63210426 63210792 -164313786 + L2 LINE L2 2910 3263 -9 379 228 251 12 chr3 63211994 63212161 -164312417 - MIR SINE MIR -28 234 28 216 0 0 0 chr3 63212977 63213001 -164311577 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1107 294 39 10 chr3 63213099 63213484 -164311094 + LTR16C LTR ERVL 73 468 -23 1842 149 54 0 chr3 63213506 63213679 -164310899 - AluSx SINE Alu -1 311 114 206 32 32 0 chr3 63213679 63213710 -164310868 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1842 149 54 0 chr3 63213710 63213831 -164310747 - AluSx SINE Alu -198 114 1 1787 172 0 17 chr3 63214271 63214567 -164310011 + AluJb SINE Alu 1 291 -21 288 279 59 13 chr3 63214994 63215126 -164309452 - MIR SINE MIR -61 147 13 216 0 0 0 chr3 63215858 63215882 -164308696 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 319 223 24 15 chr3 63215882 63216063 -164308515 + GA-rich Low_complexity Low_complexity 1 182 0 25 0 0 0 chr3 63216473 63216498 -164308080 + AT_rich Low_complexity Low_complexity 1 25 0 243 337 30 20 chr3 63217938 63218039 -164306539 - MIR3 SINE MIR -11 197 96 241 211 46 83 chr3 63218385 63218494 -164306084 - HAL1 LINE L1 -5 2502 2398 301 244 92 23 chr3 63218561 63218692 -164305886 - L1MC4a LINE L1 -1921 5887 5748 261 289 0 24 chr3 63218698 63218781 -164305797 + L2 LINE L2 3195 3275 -38 228 271 47 35 chr3 63218781 63218866 -164305712 - L1MC4a LINE L1 -2019 5789 5704 312 316 134 19 chr3 63219003 63219272 -164305306 - L1MC4a LINE L1 -2194 5614 5315 191 444 9 0 chr3 63219672 63219787 -164304791 - L3 LINE CR1 -36 1541 1426 291 28 0 0 chr3 63220216 63220252 -164304326 + (TC)n Simple_repeat Simple_repeat 1 36 0 270 0 0 0 chr3 63220251 63220281 -164304297 + (CA)n Simple_repeat Simple_repeat 1 30 0 * 2277 91 0 20 chr3 63220338 63220636 -164303942 - AluSq SINE Alu -21 292 1 700 320 88 48 chr3 63220673 63221241 -164303337 - L3 LINE CR1 -788 789 199 521 288 85 50 chr3 63221322 63221746 -164302832 + L1ME4a LINE L1 5517 5955 -166 198 103 0 0 chr3 63221751 63221780 -164302798 + (TG)n Simple_repeat Simple_repeat 2 30 0 229 65 0 0 chr3 63221780 63221826 -164302752 + LTR66 LTR ERVL 394 439 -171 233 295 16 41 chr3 63223537 63223654 -164300924 + MIR SINE MIR 1 114 -94 1086 51 0 0 chr3 63227088 63227225 -164297353 + (TTC)n Simple_repeat Simple_repeat 1 274 0 1086 51 0 0 chr3 63227225 63227362 -164297216 + (TTC)n Simple_repeat Simple_repeat 3 139 0 2004 145 7 0 chr3 63227415 63227704 -164296874 - AluJb SINE Alu -21 291 1 192 311 0 0 chr3 63228100 63228145 -164296433 - MIR SINE MIR -93 115 71 428 264 75 0 chr3 63228290 63228438 -164296140 + MIR SINE MIR 73 230 -32 505 297 62 26 chr3 63228604 63228796 -164295782 - MIR3 SINE MIR -9 199 1 21 0 0 0 chr3 63229351 63229372 -164295206 + AT_rich Low_complexity Low_complexity 1 21 0 712 291 107 13 chr3 63229520 63229819 -164294759 + L2 LINE L2 2982 3308 -5 587 241 118 25 chr3 63230013 63230368 -164294210 + L1ME4a LINE L1 5563 5946 -175 318 229 126 0 chr3 63230356 63230494 -164294084 + HAL1b LINE L1 1232 1340 -8 * 633 278 73 5 chr3 63231590 63231781 -164292797 + MIR SINE MIR 53 256 -6 365 308 39 8 chr3 63235070 63235200 -164289378 + MER117 DNA MER1_type 7 140 -57 499 265 22 186 chr3 63235229 63235644 -164288934 - L2 LINE L2 0 3272 2926 1114 240 123 54 chr3 63236254 63236676 -164287902 + L2 LINE L2 2763 3209 -104 1730 162 13 16 chr3 63236676 63236985 -164287593 + AluJo SINE Alu 3 310 -2 1114 240 123 54 chr3 63236985 63237094 -164287484 + L2 LINE L2 3209 3309 -4 347 82 0 0 chr3 63237586 63237635 -164286943 - L2 LINE L2 0 3313 3265 1394 193 85 4 chr3 63237708 63237978 -164286600 + AluJb SINE Alu 1 292 -20 207 186 0 0 chr3 63238477 63238520 -164286058 + (TAG)n Simple_repeat Simple_repeat 1 43 0 627 277 103 5 chr3 63238523 63238736 -164285842 - MIR SINE MIR 0 262 29 467 259 127 6 chr3 63238785 63238951 -164285627 + MIR SINE MIR 77 262 0 448 312 68 18 chr3 63239145 63239366 -164285212 + MIR SINE MIR 28 259 -3 554 182 0 6 chr3 63240517 63240662 -164283916 + CT-rich Low_complexity Low_complexity 2 147 -23 396 0 0 0 chr3 63240662 63240706 -164283872 + (CA)n Simple_repeat Simple_repeat 1 44 0 554 182 0 6 chr3 63240706 63240730 -164283848 + CT-rich Low_complexity Low_complexity 147 170 0 259 218 0 0 chr3 63242314 63242369 -164282209 + (TCCA)n Simple_repeat Simple_repeat 4 58 0 1399 214 23 123 chr3 63242378 63242817 -164281761 - MSTD LTR MaLR -1 395 1 485 315 119 48 chr3 63242976 63243541 -164281037 + L2 LINE L2 2368 2972 -342 377 309 113 16 chr3 63243596 63243790 -164280788 + L2 LINE L2 3096 3308 -5 2281 244 44 0 chr3 63244840 63245337 -164279241 + LTR40a LTR ERVL 1 519 0 269 252 17 70 chr3 63245380 63245495 -164279083 + L1ME4a LINE L1 5955 6063 -58 294 347 11 0 chr3 63245713 63245808 -164278770 + L2 LINE L2 2580 2675 -639 7575 47 8 0 chr3 63245882 63247157 -164277421 - L1PA7 LINE L1 -4 6150 4873 1356 183 30 4 chr3 63247935 63248165 -164276413 + MER46A DNA MER2_type 1 236 0 264 100 0 0 chr3 63250713 63250753 -164273825 + (A)n Simple_repeat Simple_repeat 1 40 0 424 324 59 36 chr3 63250865 63251007 -164273571 + MIR SINE MIR 28 178 -84 3714 109 63 91 chr3 63251007 63251240 -164273338 + MER51A LTR ERV1 1 239 -395 2213 99 0 34 chr3 63251240 63251562 -164273016 + AluSq SINE Alu 1 311 -2 3714 109 63 91 chr3 63251562 63251979 -164272599 + MER51A LTR ERV1 239 633 -1 424 324 59 36 chr3 63251979 63252058 -164272520 + MIR SINE MIR 178 254 -8 21 0 0 0 chr3 63252534 63252555 -164272023 + AT_rich Low_complexity Low_complexity 1 21 0 2247 93 0 27 chr3 63253361 63253661 -164270917 - AluSx SINE Alu -20 292 1 278 246 100 64 chr3 63255456 63255566 -164269012 - L2 LINE L2 -4 3268 3155 298 224 0 71 chr3 63255943 63256028 -164268550 - MER116 DNA Mariner -1 79 1 1103 173 103 169 chr3 63256543 63257057 -164267521 + LTR12 LTR ERV1 1 480 -234 27 73 0 0 chr3 63257283 63257338 -164267240 + AT_rich Low_complexity Low_complexity 1 55 0 311 301 103 15 chr3 63257373 63257576 -164267002 - MIR SINE MIR -2 260 40 339 299 93 47 chr3 63258658 63258872 -164265706 + L3 LINE CR1 1198 1421 -156 249 159 29 43 chr3 63258997 63259066 -164265512 - LTR67 LTR ERVL -21 536 469 644 174 141 27 chr3 63259418 63259567 -164265011 - MER63A DNA MER1_type -3 207 42 852 261 9 27 chr3 63259670 63259892 -164264686 - MIR SINE MIR 0 262 45 222 294 59 12 chr3 63260428 63260513 -164264065 + MIR SINE MIR 82 170 -92 519 227 118 19 chr3 63260977 63261149 -164263429 + MIR SINE MIR 31 218 -44 21 57 0 0 chr3 63264550 63264585 -164259993 + AT_rich Low_complexity Low_complexity 1 35 0 542 271 21 0 chr3 63264660 63264804 -164259774 + MIR SINE MIR 103 249 -13 324 0 0 0 chr3 63266582 63266618 -164257960 + (A)n Simple_repeat Simple_repeat 1 36 0 298 182 36 0 chr3 63268322 63268377 -164256201 - MER58A DNA MER1_type 0 224 168 572 199 21 84 chr3 63268392 63268583 -164255995 + MER53 DNA DNA 11 189 0 773 212 8 0 chr3 63268585 63268717 -164255861 - MER58A DNA MER1_type -52 172 40 626 110 250 15 chr3 63268723 63268859 -164255719 + THE1B LTR MaLR 1 168 -207 1278 65 0 0 chr3 63268859 63269014 -164255564 + AluY SINE Alu 146 300 -11 269 143 36 0 chr3 63269030 63269086 -164255492 + CT-rich Low_complexity Low_complexity 3 60 0 1040 114 20 50 chr3 63269086 63269278 -164255300 + THE1B LTR MaLR 194 364 0 26 30 0 0 chr3 63269647 63269680 -164254898 + AT_rich Low_complexity Low_complexity 1 33 0 200 270 111 87 chr3 63269866 63269992 -164254586 + L3 LINE CR1 1195 1323 -254 272 332 64 30 chr3 63270146 63270348 -164254230 - L2 LINE L2 -214 3058 2850 244 264 165 16 chr3 63270646 63270767 -164253811 + MIR SINE MIR 111 249 -13 187 196 216 21 chr3 63271538 63271635 -164252943 + L2 LINE L2 3151 3266 -6 731 125 27 0 chr3 63273472 63273584 -164250994 - AluSg/x SINE Alu -6 304 190 470 228 0 35 chr3 63274123 63274237 -164250341 - L2 LINE L2 0 3313 3204 2345 118 131 8 chr3 63274985 63275366 -164249212 + MSTA LTR MaLR 1 428 0 661 291 132 25 chr3 63275468 63275914 -164248664 - L2 LINE L2 0 3313 2820 181 323 46 0 chr3 63276010 63276075 -164248503 - L2 LINE L2 -591 2723 2656 359 178 25 0 chr3 63276083 63276174 -164248404 + MIR3 SINE MIR 112 206 -2 21 0 0 0 chr3 63276690 63276711 -164247867 + AT_rich Low_complexity Low_complexity 1 21 0 307 211 13 0 chr3 63276711 63276787 -164247791 - MER116 DNA Mariner -3 77 1 796 279 34 34 chr3 63277068 63277359 -164247219 + MLT1I LTR MaLR 57 316 -93 524 307 90 45 chr3 63277406 63277650 -164246928 + Charlie8 DNA MER1_type 4 258 -2159 4919 42 3 42 chr3 63277743 63278386 -164246192 - L1PA7 LINE L1 -3 6151 5534 415 258 220 22 chr3 63278484 63278666 -164245912 - MIR SINE MIR -32 230 13 209 241 11 46 chr3 63279148 63279235 -164245343 + MIR SINE MIR 163 246 -16 1167 134 0 0 chr3 63279271 63279428 -164245150 - AluSg/x SINE Alu -21 289 133 2525 56 0 7 chr3 63279429 63279735 -164244843 - AluY SINE Alu -7 304 1 1383 249 117 25 chr3 63279886 63280593 -164243985 + L2 LINE L2 2383 3156 -157 305 285 131 8 chr3 63280681 63280811 -164243767 + L2 LINE L2 3164 3309 -4 337 267 0 23 chr3 63282340 63282369 -164242209 + GA-rich Low_complexity Low_complexity 1 29 -99 1642 191 3 20 chr3 63282369 63282714 -164241864 + AluJb SINE Alu 1 312 0 337 267 0 23 chr3 63282714 63282815 -164241763 + GA-rich Low_complexity Low_complexity 29 128 0 216 0 0 0 chr3 63283260 63283284 -164241294 + (TTG)n Simple_repeat Simple_repeat 1 24 0 246 236 0 18 chr3 63283340 63283395 -164241183 + MER115 DNA AcHobo 640 693 0 21 36 0 0 chr3 63284184 63284212 -164240366 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr3 63285192 63285220 -164239358 + AT_rich Low_complexity Low_complexity 1 28 0 256 269 0 0 chr3 63285253 63285320 -164239258 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 2243 86 3 64 chr3 63286319 63286632 -164237946 + AluSx SINE Alu 1 294 -18 228 309 35 39 chr3 63286686 63286916 -164237662 + L1M4 LINE L1 3676 3904 -2242 286 289 90 25 chr3 63287094 63287416 -164237162 + L1M4 LINE L1 3917 4259 -1887 302 211 132 13 chr3 63287866 63287942 -164236636 - MIR SINE MIR -164 98 14 2177 105 3 3 chr3 63288709 63289013 -164235565 + AluSq SINE Alu 1 304 -9 272 274 60 0 chr3 63289660 63289744 -164234834 - L2 LINE L2 0 3313 3225 195 224 143 0 chr3 63290076 63290125 -164234453 - MIR SINE MIR -178 84 29 325 294 117 18 chr3 63290333 63290496 -164234082 + MIR SINE MIR 9 187 -75 207 0 0 0 chr3 63291287 63291310 -164233268 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 213 202 146 34 chr3 63292515 63292604 -164231974 - L3b LINE CR1 -203 1380 1282 556 219 26 32 chr3 63293642 63293797 -164230781 - MIR SINE MIR -23 239 86 366 303 15 15 chr3 63294115 63294247 -164230331 + MIR SINE MIR 26 157 -105 1905 147 3 3 chr3 63294258 63294551 -164230027 + AluJb SINE Alu 5 297 -15 728 133 7 7 chr3 63296748 63296883 -164227695 + L1P LINE L1 2974 3108 -3038 277 135 19 0 chr3 63297214 63297266 -164227312 - Charlie5 DNA MER1_type -41 2571 2519 1243 223 14 47 chr3 63297278 63297574 -164227004 + AluJb SINE Alu 3 288 -14 259 298 45 62 chr3 63297764 63297942 -164226636 + MER5B DNA MER1_type 1 175 -3 295 250 0 0 chr3 63298304 63298364 -164226214 + LTR43-int LTR ERV1 3833 3892 -906 * 2799 234 43 18 chr3 63298360 63299018 -164225560 + LTR43-int LTR ERV1 4125 4798 0 1238 217 0 0 chr3 63299018 63299244 -164225334 + LTR43 LTR ERV1 1 226 -376 1616 205 0 0 chr3 63299244 63299541 -164225037 + AluSx SINE Alu 1 297 -15 2849 144 6 4 chr3 63299642 63300120 -164224458 + L1PA8 LINE L1 5694 6172 0 454 277 39 0 chr3 63300803 63300933 -164223645 - MER93a LTR ERV1 -24 378 244 23 0 0 0 chr3 63301129 63301152 -164223426 + AT_rich Low_complexity Low_complexity 1 23 0 214 288 150 0 chr3 63301437 63301517 -164223061 - L2 LINE L2 -498 2816 2725 297 51 0 0 chr3 63301530 63301569 -164223009 + (TG)n Simple_repeat Simple_repeat 2 40 0 444 342 76 17 chr3 63303256 63303493 -164221085 + MIR SINE MIR 8 258 -4 557 100 11 0 chr3 63303856 63303946 -164220632 + (TA)n Simple_repeat Simple_repeat 1 91 0 472 205 0 0 chr3 63304254 63304332 -164220246 - AluS SINE Alu -224 89 12 240 111 0 0 chr3 63304416 63304452 -164220126 + (A)n Simple_repeat Simple_repeat 1 36 0 1948 145 3 13 chr3 63306027 63306337 -164218241 + AluSp SINE Alu 1 307 -6 240 35 0 0 chr3 63307666 63307695 -164216883 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1371 191 40 50 chr3 63308498 63309047 -164215531 + pTR5 LTR ERV1 742 1345 -1093 4243 138 105 21 chr3 63309062 63309821 -164214757 + LTR12 LTR ERV1 4 826 0 25838 31 3 1 chr3 63310322 63314144 -164210434 + L1PA2 LINE L1 2333 6155 0 865 229 20 20 chr3 63314147 63314396 -164210182 + L1M4 LINE L1 3840 4088 -2058 447 186 23 0 chr3 63516984 63517070 -164007508 + MLT1E2 LTR MaLR 535 622 -4 909 268 40 31 chr3 63517075 63517400 -164007178 - LTR16C LTR ERVL -11 480 153 225 280 274 0 chr3 63518447 63518604 -164005974 - MIR SINE MIR -26 236 37 247 321 79 55 chr3 63519029 63519194 -164005384 + MIR SINE MIR 94 262 0 210 238 0 0 chr3 63519406 63519448 -164005130 + (CATA)n Simple_repeat Simple_repeat 2 43 0 1971 145 3 10 chr3 63519451 63519798 -164004780 - AluSx SINE Alu 0 345 1 306 271 119 34 chr3 63520759 63520877 -164003701 + MIR SINE MIR 33 160 -102 343 179 0 0 chr3 63521420 63521476 -164003102 + MER20 DNA MER1_type 161 216 -3 194 355 0 0 chr3 63521899 63521961 -164002617 + MIR3 SINE MIR 110 171 -37 209 280 0 0 chr3 63522469 63522519 -164002059 + L2 LINE L2 3264 3313 0 321 355 14 7 chr3 63522564 63522702 -164001876 + CT-rich Low_complexity Low_complexity 6 144 0 315 0 0 0 chr3 63522855 63522890 -164001688 + (TG)n Simple_repeat Simple_repeat 1 35 0 384 345 34 5 chr3 63523879 63524088 -164000490 + MIR SINE MIR 48 262 0 606 252 93 31 chr3 63525816 63526042 -163998536 - MIR SINE MIR -2 260 21 2238 104 3 7 chr3 63527431 63527738 -163996840 + THE1B LTR MaLR 59 364 0 647 297 67 5 chr3 63527771 63527966 -163996612 - MIR SINE MIR -14 248 42 21 0 0 0 chr3 63528292 63528313 -163996265 + AT_rich Low_complexity Low_complexity 1 21 0 295 289 19 58 chr3 63528316 63528420 -163996158 - MIR SINE MIR -132 130 31 203 305 0 0 chr3 63529079 63529138 -163995440 + GA-rich Low_complexity Low_complexity 2 60 0 868 292 107 23 chr3 63529195 63529586 -163994992 + MLT1J LTR MaLR 10 433 -78 1882 247 64 13 chr3 63530357 63530903 -163993675 + L1ME3A LINE L1 5595 6168 -2 2166 158 30 3 chr3 63531066 63531394 -163993184 - MER1B DNA MER1_type 0 337 1 2768 16 0 0 chr3 63531416 63531720 -163992858 + AluYa5 SINE Alu 1 304 -7 3639 228 8 31 chr3 63532189 63532856 -163991722 - L1PA14 LINE L1 0 6161 5511 441 36 0 0 chr3 63532884 63532939 -163991639 + (TC)n Simple_repeat Simple_repeat 2 56 0 302 226 49 29 chr3 63533914 63534016 -163990562 + L1ME4a LINE L1 5967 6070 -51 1889 133 14 0 chr3 63534032 63534311 -163990267 - AluJo SINE Alu -25 287 5 1346 43 0 6 chr3 63535290 63535451 -163989127 - AluY SINE Alu 0 311 152 1611 70 0 0 chr3 63535451 63535650 -163988928 - AluY SINE Alu -112 199 1 681 293 60 71 chr3 63536405 63536574 -163988004 + MLT1J1 LTR MaLR 1 170 -276 2092 176 5 54 chr3 63536574 63536984 -163987594 - MLT1B LTR MaLR 0 390 1 681 293 60 71 chr3 63536984 63537265 -163987313 + MLT1J1 LTR MaLR 170 446 0 191 291 166 60 chr3 63537383 63537534 -163987044 - MER5A DNA MER1_type -22 167 1 257 291 0 0 chr3 63538521 63538607 -163985971 + (TTA)n Simple_repeat Simple_repeat 3 88 0 535 149 19 0 chr3 63538694 63538801 -163985777 + GA-rich Low_complexity Low_complexity 3 111 0 289 307 100 27 chr3 63538925 63539075 -163985503 - MER117 DNA MER1_type -3 194 34 365 322 126 15 chr3 63539127 63539326 -163985252 + MIR SINE MIR 27 247 -15 630 180 4 38 chr3 63539936 63540193 -163984385 + GA-rich Low_complexity Low_complexity 1 248 0 300 261 34 23 chr3 63541011 63541099 -163983479 + L1ME LINE L1 2 90 -5980 223 186 0 0 chr3 63541288 63541331 -163983247 + (CAG)n Simple_repeat Simple_repeat 3 45 0 2452 224 142 55 chr3 63541404 63541685 -163982893 + L1ME LINE L1 327 582 -5498 1684 181 28 0 chr3 63541685 63541967 -163982611 + AluJb SINE Alu 1 290 -22 2452 224 142 55 chr3 63541967 63542354 -163982224 + L1ME LINE L1 582 934 -5146 1434 194 20 40 chr3 63542354 63542653 -163981925 - AluJb SINE Alu -19 293 1 2452 224 142 55 chr3 63542653 63542810 -163981768 + L1ME LINE L1 934 1076 -5004 183 42 0 0 chr3 63542810 63542834 -163981744 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2452 224 142 55 chr3 63542834 63543490 -163981088 + L1ME LINE L1 1076 1923 -4157 1621 203 3 13 chr3 63543490 63543795 -163980783 + AluJo SINE Alu 1 302 -10 2452 224 142 55 chr3 63543795 63543854 -163980724 + L1ME LINE L1 1923 1975 -4105 1380 213 4 22 chr3 63543861 63544133 -163980445 + AluJo SINE Alu 9 275 -37 882 125 0 0 chr3 63544152 63544296 -163980282 + (GGGGA)n Simple_repeat Simple_repeat 4 147 0 258 283 83 14 chr3 63544298 63544443 -163980135 + L1ME LINE L1 2005 2159 -4102 7760 75 4 8 chr3 63544455 63545460 -163979118 + L1P LINE L1 9 1009 -5137 3476 241 36 14 chr3 63545597 63547287 -163977291 - L1MEc LINE L1 -494 5741 1337 792 230 51 15 chr3 63547334 63548496 -163976082 - L1M4 LINE L1 -2666 3480 2176 * 35066 40 4 1 chr3 63548490 63553504 -163971074 - L1PA4 LINE L1 -2 6153 1126 685 173 24 8 chr3 63553604 63553731 -163970847 - MER20 DNA MER1_type -82 137 9 2053 129 0 3 chr3 63553924 63554211 -163970367 - AluJb SINE Alu -3 309 24 237 263 0 0 chr3 63555041 63555098 -163969480 + MIR SINE MIR 114 170 -92 300 158 0 0 chr3 63555475 63555532 -163969046 + T-rich Low_complexity Low_complexity 1 57 0 197 354 118 24 chr3 63555729 63556017 -163968561 - L3 LINE CR1 -189 1388 1074 485 199 158 34 chr3 63556153 63556299 -163968279 + MLT1J LTR MaLR 3 166 -345 320 217 33 158 chr3 63556314 63556466 -163968112 + L2 LINE L2 3176 3308 -5 603 284 40 15 chr3 63556494 63556695 -163967883 + MLT1J LTR MaLR 197 402 -109 183 80 0 0 chr3 63557212 63557237 -163967341 + (A)n Simple_repeat Simple_repeat 1 25 0 2719 118 43 19 chr3 63558429 63558851 -163965727 + MSTB1 LTR MaLR 1 432 0 2149 150 39 9 chr3 63558885 63559218 -163965360 - MER2 DNA MER2_type 0 344 2 317 200 231 77 chr3 63559414 63559544 -163965034 + L2 LINE L2 3151 3300 -13 204 217 0 0 chr3 63559562 63559608 -163964970 - L2 LINE L2 0 3313 3268 620 219 119 0 chr3 63559838 63559957 -163964621 + L1MD2 LINE L1 6016 6158 -201 294 29 0 0 chr3 63559957 63559992 -163964586 + (CA)n Simple_repeat Simple_repeat 2 36 0 620 219 119 0 chr3 63559992 63560023 -163964555 + L1MD2 LINE L1 6158 6184 -175 2212 89 3 0 chr3 63560029 63560351 -163964227 + AluY SINE Alu 1 323 0 774 243 11 0 chr3 63560386 63560567 -163964011 + L1MD2 LINE L1 6157 6339 -20 284 274 57 16 chr3 63560786 63560910 -163963668 + L1ME4a LINE L1 5975 6103 -18 312 317 149 30 chr3 63560931 63561193 -163963385 + L3 LINE CR1 1268 1560 -17 297 179 11 67 chr3 63561294 63561389 -163963189 - MIR SINE MIR -61 147 103 232 208 68 90 chr3 63562207 63562336 -163962242 - MIR SINE MIR -56 152 30 1546 111 0 5 chr3 63563761 63563977 -163960601 + L1PB1 LINE L1 5936 6150 -1 207 304 13 38 chr3 63565933 63566012 -163958566 + MIR SINE MIR 54 130 -78 859 198 173 42 chr3 63566121 63566480 -163958098 + MLT1I LTR MaLR 1 406 -3 2396 88 0 0 chr3 63566496 63566791 -163957787 - AluSc SINE Alu -2 307 13 321 270 47 88 chr3 63567450 63567724 -163956854 + MLT1H LTR MaLR 121 383 -166 239 257 81 0 chr3 63567715 63567789 -163956789 + MLT1H LTR MaLR 500 579 -16 * 248 270 81 14 chr3 63567873 63567947 -163956631 + Charlie8 DNA MER1_type 2339 2417 0 344 246 29 87 chr3 63568881 63569019 -163955559 - MIR SINE MIR -1 261 132 2283 84 0 3 chr3 63569081 63569379 -163955199 + AluY SINE Alu 1 297 -14 518 335 92 35 chr3 63570685 63571210 -163953368 - L2 LINE L2 0 3313 2761 815 123 18 0 chr3 63572016 63572130 -163952448 + FLAM_A SINE Alu 4 119 -14 396 0 0 0 chr3 63572130 63572174 -163952404 + (CA)n Simple_repeat Simple_repeat 2 45 0 180 0 0 0 chr3 63572173 63572193 -163952385 + (TC)n Simple_repeat Simple_repeat 2 21 0 * 257 230 56 71 chr3 63573680 63573806 -163950772 + L1ME4a LINE L1 5928 6051 -70 1299 161 22 13 chr3 63574057 63574281 -163950297 - AluJo SINE Alu -4 308 83 22 0 0 0 chr3 63574407 63574429 -163950149 + AT_rich Low_complexity Low_complexity 1 22 0 321 295 161 42 chr3 63576036 63576372 -163948206 - Tigger8 DNA MER2_type -107 559 184 372 296 238 29 chr3 63577629 63578008 -163946570 + L2 LINE L2 2856 3313 0 1419 203 67 118 chr3 63578335 63578887 -163945691 + L1MB4 LINE L1 5653 6176 -4 329 203 76 0 chr3 63579016 63579095 -163945483 - MLT1J1 LTR MaLR -4 442 358 * 471 324 98 19 chr3 63579091 63579347 -163945231 - MLT1J2 LTR MaLR -152 298 23 232 191 63 32 chr3 63579486 63579549 -163945029 + L1MC/D LINE L1 5540 5604 -2204 649 233 161 63 chr3 63579612 63579900 -163944678 + MLT1H LTR MaLR 41 373 -169 330 200 141 0 chr3 63579928 63580013 -163944565 + MLT1H LTR MaLR 453 549 0 1323 195 0 0 chr3 63580183 63580398 -163944180 + AluJo SINE Alu 5 219 -93 2277 84 0 39 chr3 63580818 63581129 -163943449 + AluY SINE Alu 1 299 -12 279 0 0 0 chr3 63581988 63582019 -163942559 + (A)n Simple_repeat Simple_repeat 1 31 0 564 290 90 55 chr3 63582522 63582998 -163941580 + L1MC4a LINE L1 5437 5929 -1879 399 21 0 0 chr3 63583148 63583196 -163941382 + (TG)n Simple_repeat Simple_repeat 2 49 0 1775 206 118 13 chr3 63583196 63583661 -163940917 - L1ME2 LINE L1 -8 6156 5643 814 245 56 0 chr3 63583747 63583943 -163940635 + MIR SINE MIR 13 219 -43 339 324 11 8 chr3 63585183 63585371 -163939207 + MIR SINE MIR 2 249 -13 8578 177 111 19 chr3 63585376 63586984 -163937594 - MER52A LTR ERV1 0 1755 1 588 241 43 37 chr3 63587959 63588146 -163936432 + L2 LINE L2 2587 2774 -540 327 331 48 42 chr3 63588221 63588387 -163936191 + L2 LINE L2 2885 3051 -221 1830 116 62 7 chr3 63588759 63589034 -163935544 + AluSq SINE Alu 1 290 -23 297 322 51 90 chr3 63589061 63589515 -163935063 + L2 LINE L2 2826 3261 -11 1039 177 0 142 chr3 63590183 63590443 -163934135 - MER58A DNA MER1_type -1 223 1 693 223 139 51 chr3 63590499 63590714 -163933864 - MIR SINE MIR -25 237 4 534 324 22 0 chr3 63592038 63592217 -163932361 - MIR SINE MIR -28 234 52 2567 200 23 102 chr3 63592488 63593132 -163931446 - MLT1E LTR MaLR 0 593 1 831 219 0 0 chr3 63593133 63593293 -163931285 + MER3 DNA MER1_type 3 162 -47 479 309 116 14 chr3 63594390 63594597 -163929981 - MIR SINE MIR -10 252 25 1799 153 67 74 chr3 63595558 63595949 -163928629 + MSTD LTR MaLR 1 388 -8 25 83 0 0 chr3 63596019 63596079 -163928499 + AT_rich Low_complexity Low_complexity 1 60 0 402 21 0 0 chr3 63597174 63597221 -163927357 + (CA)n Simple_repeat Simple_repeat 1 47 0 4936 160 28 14 chr3 63598222 63599145 -163925433 + L1MB7 LINE L1 5236 6168 -16 231 125 0 0 chr3 63599857 63599897 -163924681 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 4127 64 2 6 chr3 63600047 63600547 -163924031 - L1PA8 LINE L1 -6 6166 5669 330 293 171 11 chr3 63601351 63601532 -163923046 + MIR SINE MIR 41 250 -12 204 222 40 87 chr3 63602148 63602274 -163922304 + L2 LINE L2 3182 3301 -12 205 220 40 0 chr3 63602274 63602324 -163922254 - L2 LINE L2 -9 3263 3212 * 333 284 85 23 chr3 63602290 63602491 -163922087 - MIR SINE MIR -21 241 29 1646 212 37 64 chr3 63603143 63603600 -163920978 - MLT1C LTR MaLR 0 467 12 458 337 88 6 chr3 63603608 63603789 -163920789 - MIR SINE MIR -6 256 61 261 210 74 37 chr3 63603926 63604007 -163920571 - MER117 DNA MER1_type -6 191 108 414 0 0 0 chr3 63604108 63604154 -163920424 + (CA)n Simple_repeat Simple_repeat 2 47 0 24 53 0 0 chr3 63604897 63604935 -163919643 + AT_rich Low_complexity Low_complexity 1 38 0 2140 116 10 0 chr3 63605203 63605505 -163919073 + AluSx SINE Alu 1 305 -7 322 330 8 0 chr3 63605609 63605727 -163918851 - MIR3 SINE MIR -48 160 42 24 0 0 0 chr3 63605795 63605819 -163918759 + AT_rich Low_complexity Low_complexity 1 24 0 211 339 0 16 chr3 63605944 63606006 -163918572 + L2 LINE L2 3203 3263 -50 878 152 24 156 chr3 63606137 63606387 -163918191 - MER20 DNA MER1_type -2 217 1 1861 173 7 7 chr3 63606507 63606814 -163917764 + AluJb SINE Alu 1 307 -5 1783 173 19 3 chr3 63606890 63607202 -163917376 + L1MB3 LINE L1 5858 6174 -9 2129 127 0 0 chr3 63607255 63607555 -163917023 + AluSx SINE Alu 1 300 -12 305 74 0 19 chr3 63607624 63607678 -163916900 + (GTTTG)n Simple_repeat Simple_repeat 1 53 0 226 288 25 0 chr3 63609777 63609857 -163914721 - L1MC4 LINE L1 -1347 6695 6614 2737 167 14 22 chr3 63609930 63610433 -163914145 + L1MB7 LINE L1 5645 6143 -41 242 342 32 13 chr3 63610442 63610600 -163913978 - L2 LINE L2 -177 3136 2976 180 0 0 0 chr3 63610631 63610651 -163913927 + (TCTCCC)n Simple_repeat Simple_repeat 6 25 0 663 199 57 0 chr3 63610660 63610801 -163913777 - L1MB4 LINE L1 0 6180 6032 244 196 39 0 chr3 63611335 63611386 -163913192 + (CATA)n Simple_repeat Simple_repeat 4 56 0 210 216 0 39 chr3 63613663 63613714 -163910864 + T-rich Low_complexity Low_complexity 5 53 0 570 280 55 20 chr3 63614979 63615179 -163909399 + MIR SINE MIR 8 214 -48 269 294 20 0 chr3 63615369 63615471 -163909107 - L1MC4 LINE L1 -1326 6716 6613 252 272 72 97 chr3 63615544 63615739 -163908839 + MLT1J LTR MaLR 120 309 -202 1379 156 138 0 chr3 63616918 63617201 -163907377 - MER33 DNA MER1_type 0 324 3 349 195 53 88 chr3 63617326 63617439 -163907139 - L1MC4 LINE L1 -1318 6724 6616 284 207 98 0 chr3 63617439 63617521 -163907057 - L1MC4 LINE L1 -1339 6703 6614 229 225 42 0 chr3 63617568 63617639 -163906939 + MER116 DNA Mariner 2 75 -5 426 253 6 16 chr3 63618029 63618211 -163906367 + (CAT)n Simple_repeat Simple_repeat 1 180 0 186 306 102 46 chr3 63618242 63618350 -163906228 + L2 LINE L2 2966 3079 -193 3027 164 25 23 chr3 63618723 63618834 -163905744 - L1MB8 LINE L1 -26 6152 6042 1804 189 23 118 chr3 63618834 63620050 -163904528 - L1MC4 LINE L1 -748 5398 4967 27 0 0 0 chr3 63620342 63620369 -163904209 + AT_rich Low_complexity Low_complexity 1 27 0 195 42 0 0 chr3 63620439 63620463 -163904115 + (TTTTG)n Simple_repeat Simple_repeat 4 27 0 259 231 0 16 chr3 63620481 63620602 -163903976 + CT-rich Low_complexity Low_complexity 1 119 0 289 204 0 0 chr3 63620716 63620765 -163903813 + L2 LINE L2 3209 3257 -15 250 283 101 104 chr3 63622917 63623214 -163901364 + L2 LINE L2 2970 3265 -7 2290 112 0 0 chr3 63623479 63623773 -163900805 - AluSx SINE Alu -17 295 2 351 263 207 66 chr3 63623837 63624050 -163900528 - MIR SINE MIR -13 249 7 242 312 138 0 chr3 63624568 63624677 -163899901 + L2 LINE L2 3149 3272 0 23 0 0 0 chr3 63625208 63625231 -163899347 + AT_rich Low_complexity Low_complexity 1 23 0 575 217 72 22 chr3 63625358 63625538 -163899040 + L1MC5 LINE L1 7723 7911 -50 935 169 92 34 chr3 63626306 63626513 -163898065 + MER20 DNA MER1_type 1 219 0 742 204 93 36 chr3 63626713 63626880 -163897698 + MIR SINE MIR 41 212 -50 456 290 83 57 chr3 63626900 63627209 -163897369 + L2 LINE L2 2692 3019 -294 504 299 66 36 chr3 63628091 63628502 -163896076 - LTR33 LTR ERVL -53 468 46 213 267 144 33 chr3 63629697 63629787 -163894791 - MIR SINE MIR -11 251 152 462 273 39 32 chr3 63629806 63629960 -163894618 + L2 LINE L2 2882 3036 -236 2158 142 0 0 chr3 63630280 63630590 -163893988 + AluSx SINE Alu 3 312 0 223 279 0 16 chr3 63631415 63631476 -163893102 + (TATATG)n Simple_repeat Simple_repeat 4 63 0 552 304 40 5 chr3 63631729 63631938 -163892640 - MIR SINE MIR -12 250 37 472 283 197 14 chr3 63632330 63632691 -163891887 - MARNA DNA Mariner -87 499 73 639 295 167 45 chr3 63633648 63634068 -163890510 - L2 LINE L2 0 3313 2843 217 149 85 0 chr3 63634308 63634355 -163890223 - MIR SINE MIR -164 98 48 2082 122 6 32 chr3 63634409 63634721 -163889857 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr3 63636291 63636313 -163888265 + AT_rich Low_complexity Low_complexity 1 22 0 439 199 80 46 chr3 63636761 63636912 -163887666 + MER103 DNA DNA 10 165 -1 400 224 243 13 chr3 63637585 63637737 -163886841 - MIR3 SINE MIR -15 193 7 214 308 64 13 chr3 63637989 63638067 -163886511 + L2 LINE L2 3215 3296 -17 273 337 0 0 chr3 63638374 63638475 -163886103 + MIR SINE MIR 104 204 -58 626 248 122 33 chr3 63638748 63638962 -163885616 + LTR16A LTR ERVL 210 442 -8 582 298 6 6 chr3 63639446 63639617 -163884961 + MIR3 SINE MIR 8 178 -30 2617 16 9 28 chr3 63639626 63639943 -163884635 - AluYa5 SINE Alu 0 311 1 265 222 12 62 chr3 63640909 63640990 -163883588 + MIR SINE MIR 87 163 -99 461 286 82 20 chr3 63643894 63644090 -163880488 - MIR SINE MIR -31 231 24 246 238 62 0 chr3 63644886 63644966 -163879612 + L1ME3A LINE L1 5792 5876 -294 957 291 121 17 chr3 63644995 63645408 -163879170 - L2 LINE L2 0 3313 2858 28 29 0 0 chr3 63645684 63645719 -163878859 + AT_rich Low_complexity Low_complexity 1 35 0 330 107 0 0 chr3 63645871 63645927 -163878651 + (CA)n Simple_repeat Simple_repeat 2 57 0 539 243 157 24 chr3 63646276 63646486 -163878092 - MIR SINE MIR -12 250 13 3357 172 118 12 chr3 63648232 63649014 -163875564 + L1MB3 LINE L1 5318 6183 0 481 230 34 34 chr3 63649275 63649423 -163875155 - MER117 DNA MER1_type -41 156 9 913 205 76 29 chr3 63649706 63649916 -163874662 - MER58A DNA MER1_type 0 224 5 545 308 23 53 chr3 63650792 63651058 -163873520 - L2 LINE L2 -634 2680 2423 307 353 38 0 chr3 63652068 63652201 -163872377 + MIR3 SINE MIR 45 182 -26 361 314 25 0 chr3 63652277 63652398 -163872180 + L2 LINE L2 3181 3304 -9 6856 117 6 10 chr3 63652933 63654490 -163870088 - L1MA3 LINE L1 0 6305 4753 1911 149 126 45 chr3 63655094 63655438 -163869140 + MSTA LTR MaLR 1 385 -43 1983 134 3 0 chr3 63655438 63655753 -163868825 + AluSx SINE Alu 1 316 0 1911 149 126 45 chr3 63655753 63655801 -163868777 + MSTA LTR MaLR 385 428 0 381 256 62 67 chr3 63655824 63655851 -163868727 + L1ME3A LINE L1 5963 5989 -181 6909 57 7 2 chr3 63655851 63657244 -163867334 + L1PA7 LINE L1 4758 6154 0 381 256 62 67 chr3 63657244 63657411 -163867167 + L1ME3A LINE L1 5989 6156 -14 1624 174 0 56 chr3 63657783 63658104 -163866474 + AluJb SINE Alu 1 303 -9 1790 191 8 11 chr3 63658432 63658798 -163865780 + MLT1A1 LTR MaLR 1 365 0 208 295 46 112 chr3 63658949 63659342 -163865236 + L2 LINE L2 2214 2580 -734 23 54 0 0 chr3 63659726 63659763 -163864815 + AT_rich Low_complexity Low_complexity 1 37 0 583 215 27 7 chr3 63660012 63660161 -163864417 - L1PB4 LINE L1 -14 6142 5991 799 143 0 0 chr3 63660164 63660297 -163864281 + L1PA15 LINE L1 5814 5946 -219 426 294 24 0 chr3 63660305 63660431 -163864147 + MIR SINE MIR 112 240 -22 207 326 65 11 chr3 63660632 63660724 -163863854 + MIR SINE MIR 13 109 -153 764 183 33 20 chr3 63660762 63660915 -163863663 + MER5B DNA MER1_type 20 174 -4 248 325 41 8 chr3 63660908 63661031 -163863547 + MIR SINE MIR 84 210 -52 * 293 318 82 18 chr3 63661164 63661274 -163863304 + L2 LINE L2 3149 3265 -7 621 286 89 5 chr3 63663955 63664179 -163860399 + MIR SINE MIR 2 244 -18 588 222 65 16 chr3 63664481 63664666 -163859912 + MER3 DNA MER1_type 11 204 -5 181 128 43 21 chr3 63664969 63665016 -163859562 + (CATA)n Simple_repeat Simple_repeat 3 50 0 219 146 0 0 chr3 63665053 63665094 -163859484 + (TG)n Simple_repeat Simple_repeat 1 41 0 360 294 97 13 chr3 63665122 63665360 -163859218 + L1ME4a LINE L1 5770 6027 -94 1694 186 85 38 chr3 63666807 63667249 -163857329 - MLT1E3 LTR MaLR -6 587 139 2249 108 0 0 chr3 63670646 63670933 -163853645 - AluSx SINE Alu -19 293 7 216 67 0 0 chr3 63670975 63671005 -163853573 + (TGG)n Simple_repeat Simple_repeat 3 32 0 273 349 61 58 chr3 63671280 63671676 -163852902 + L2 LINE L2 2901 3297 -16 2132 46 4 4 chr3 63671749 63672012 -163852566 + AluY SINE Alu 41 303 -8 730 169 27 93 chr3 63672024 63672207 -163852371 + MER5A DNA MER1_type 19 189 0 297 275 88 50 chr3 63672841 63673023 -163851555 + MIR SINE MIR 52 240 -22 766 267 52 17 chr3 63673213 63673445 -163851133 + MIR SINE MIR 23 262 0 267 285 250 6 chr3 63673607 63673779 -163850799 - Charlie8 DNA MER1_type -989 1428 117 188 318 40 73 chr3 63674449 63674600 -163849978 + L2 LINE L2 2258 2403 -911 212 226 0 19 chr3 63674938 63674991 -163849587 - L2 LINE L2 0 3313 3262 301 312 9 9 chr3 63675180 63675289 -163849289 + L1MC4a LINE L1 4937 5045 -1101 1534 179 77 9 chr3 63675290 63675615 -163848963 + MLT1A1 LTR MaLR 19 365 0 443 302 76 36 chr3 63675616 63675891 -163848687 + L1MC4a LINE L1 5024 5309 -837 1226 268 85 12 chr3 63675908 63676401 -163848177 + L1MC4a LINE L1 5373 5901 -1907 183 306 56 28 chr3 63676818 63676890 -163847688 + L3 LINE CR1 597 670 -907 274 333 94 29 chr3 63677020 63677191 -163847387 - MIR SINE MIR -1 261 80 1139 186 14 28 chr3 63678171 63678386 -163846192 + AluJo SINE Alu 71 282 -30 225 94 0 0 chr3 63678386 63678418 -163846160 + (T)n Simple_repeat Simple_repeat 1 32 0 278 333 38 38 chr3 63679921 63680026 -163844552 + L2 LINE L2 3149 3253 -19 210 224 0 0 chr3 63680035 63680084 -163844494 + GA-rich Low_complexity Low_complexity 3 51 0 289 217 0 0 chr3 63680650 63680710 -163843868 + MER103 DNA DNA 33 92 -74 247 288 72 27 chr3 63680790 63680901 -163843677 + MIR SINE MIR 73 188 -74 247 145 81 81 chr3 63681114 63681176 -163843402 + L2 LINE L2 3249 3310 -3 225 196 0 0 chr3 63682212 63682258 -163842320 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 25 0 0 0 chr3 63684787 63684812 -163839766 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr3 63686049 63686079 -163838499 + AT_rich Low_complexity Low_complexity 1 30 0 540 303 51 26 chr3 63688072 63688267 -163836311 + MIR SINE MIR 47 246 -16 21 0 0 0 chr3 63688308 63688329 -163836249 + AT_rich Low_complexity Low_complexity 1 21 0 342 347 26 4 chr3 63688362 63688502 -163836076 + MIR SINE MIR 23 164 -63 1615 170 67 3 chr3 63688875 63689157 -163835421 - AluJo SINE Alu -12 300 1 1352 181 0 9 chr3 63689291 63689512 -163835066 + AluJo SINE Alu 40 258 -54 237 313 0 15 chr3 63689512 63689579 -163834999 - MIR SINE MIR -177 85 20 28 95 0 0 chr3 63691937 63692021 -163832557 + AT_rich Low_complexity Low_complexity 1 84 0 22 35 0 0 chr3 63692979 63693008 -163831570 + AT_rich Low_complexity Low_complexity 1 29 0 225 0 0 0 chr3 63693089 63693114 -163831464 + (A)n Simple_repeat Simple_repeat 1 25 0 2147 108 0 0 chr3 63693494 63693771 -163830807 + AluSc SINE Alu 1 277 -32 288 0 0 0 chr3 63693771 63693803 -163830775 + (CAAT)n Simple_repeat Simple_repeat 4 35 0 25 51 0 0 chr3 63695887 63695926 -163828652 + AT_rich Low_complexity Low_complexity 1 39 0 205 125 107 0 chr3 63695932 63695988 -163828590 + (TTATA)n Simple_repeat Simple_repeat 1 62 0 234 0 0 0 chr3 63696322 63696348 -163828230 + (T)n Simple_repeat Simple_repeat 1 26 0 864 127 8 15 chr3 63696371 63696505 -163828073 - FLAM_C SINE Alu 0 133 1 24 0 0 0 chr3 63696639 63696663 -163827915 + AT_rich Low_complexity Low_complexity 1 24 0 195 42 0 0 chr3 63696669 63696693 -163827885 + (TC)n Simple_repeat Simple_repeat 1 24 0 977 292 97 59 chr3 63697940 63698714 -163825864 + L1ME4a LINE L1 4252 5054 -1092 400 353 65 11 chr3 63698855 63699133 -163825445 + L1ME4a LINE L1 5255 5547 -617 768 156 0 44 chr3 63699214 63699349 -163825229 + FLAM_A SINE Alu 3 131 -2 357 284 86 0 chr3 63699390 63699506 -163825072 + L1ME4a LINE L1 5789 5914 -207 185 243 9 27 chr3 63699521 63699632 -163824946 + GA-rich Low_complexity Low_complexity 3 111 0 187 267 133 27 chr3 63702815 63702890 -163821688 + L3b LINE CR1 1366 1448 -135 24 0 0 0 chr3 63703548 63703572 -163821006 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 63704241 63704262 -163820316 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 63706266 63706296 -163818282 + AT_rich Low_complexity Low_complexity 1 30 0 411 260 27 9 chr3 63706767 63706878 -163817700 - MIR SINE MIR -63 145 36 203 342 65 45 chr3 63706932 63707042 -163817536 + L2 LINE L2 3100 3215 -57 1330 216 40 55 chr3 63707042 63707445 -163817133 + MLT2C1 LTR ERVL 1 397 0 203 342 65 45 chr3 63707445 63707489 -163817089 + L2 LINE L2 3215 3257 -15 184 302 16 16 chr3 63708475 63708538 -163816040 + MIR SINE MIR 200 262 0 227 121 0 0 chr3 63709702 63709735 -163814843 - MIR SINE MIR -14 248 216 300 53 0 0 chr3 63710039 63710077 -163814501 + (CA)n Simple_repeat Simple_repeat 2 39 0 252 221 65 26 chr3 63712100 63712162 -163812416 + MIR3 SINE MIR 93 157 -51 569 248 25 25 chr3 63712162 63712319 -163812259 + MER5A DNA MER1_type 2 158 -31 220 323 99 19 chr3 63712867 63713028 -163811550 - MIR3 SINE MIR -34 174 1 6512 78 5 0 chr3 63713640 63714787 -163809791 - L1PA10 LINE L1 -4 6164 5004 186 43 0 0 chr3 63714848 63714871 -163809707 + (T)n Simple_repeat Simple_repeat 1 23 0 502 297 41 14 chr3 63714946 63715091 -163809487 - MER5A DNA MER1_type -3 186 38 367 232 7 138 chr3 63715144 63715282 -163809296 - MIR3 SINE MIR -47 161 42 725 270 107 36 chr3 63715839 63716310 -163808268 + L2 LINE L2 2687 3288 -25 845 236 91 0 chr3 63716573 63716772 -163807806 - MIR SINE MIR -42 220 4 214 290 66 104 chr3 63716843 63717208 -163807370 - L2 LINE L2 -338 2976 2626 228 288 0 17 chr3 63717826 63717885 -163806693 - L2 LINE L2 0 3272 3215 200 172 17 0 chr3 63718703 63718761 -163805817 + CT-rich Low_complexity Low_complexity 2 60 0 22 35 0 0 chr3 63719853 63719882 -163804696 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr3 63719895 63719919 -163804659 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 63719975 63719996 -163804582 + AT_rich Low_complexity Low_complexity 1 21 0 3987 72 2 4 chr3 63720004 63720529 -163804049 - L1PA14 LINE L1 -9 6152 5629 482 328 110 42 chr3 63721599 63722196 -163802382 + L2 LINE L2 2635 3271 -1 381 22 0 0 chr3 63722198 63722244 -163802334 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 209 241 35 0 chr3 63722263 63722321 -163802257 + MIR3 SINE MIR 135 194 -14 470 294 109 9 chr3 63722536 63722757 -163801821 - LTR67 LTR ERVL -1 556 314 260 222 0 0 chr3 63723301 63723355 -163801223 + MER5C DNA MER1_type 45 98 -226 1464 221 92 43 chr3 63723700 63724211 -163800367 - MLT1E1 LTR MaLR 0 654 119 2193 105 54 0 chr3 63724484 63724780 -163799798 - AluSx SINE Alu 0 312 1 246 276 0 0 chr3 63724983 63725041 -163799537 - MIR SINE MIR -1 261 204 7056 229 35 32 chr3 63725048 63728693 -163795885 - L1MD2 LINE L1 -14 6345 2695 210 282 28 14 chr3 63731273 63731344 -163793234 - L2 LINE L2 -5 3267 3196 252 323 50 10 chr3 63731641 63731740 -163792838 + MIR SINE MIR 20 122 -140 584 310 5 19 chr3 63731843 63732059 -163792519 + L1MDa LINE L1 57 269 -6271 245 219 14 0 chr3 63732066 63732139 -163792439 + GA-rich Low_complexity Low_complexity 1 74 0 892 227 32 8 chr3 63732540 63732787 -163791791 - L1MD2 LINE L1 -3576 2570 2318 1123 220 35 14 chr3 63732812 63733094 -163791484 + L1M3e LINE L1 460 747 -6742 1969 239 63 26 chr3 63733108 63734006 -163790572 + L1M3e LINE L1 1770 2555 -4941 2247 184 26 5 chr3 63734006 63734429 -163790149 + MSTB1 LTR MaLR 1 432 0 1969 239 63 26 chr3 63734429 63734869 -163789709 + L1M3e LINE L1 2555 2977 -4519 528 210 7 51 chr3 63734873 63735046 -163789532 + FLAM_A SINE Alu 11 177 0 253 86 0 0 chr3 63735011 63735233 -163789345 + (GAAA)n Simple_repeat Simple_repeat 4 225 0 * 1014 180 0 34 chr3 63735255 63735433 -163789145 + AluJo SINE Alu 1 172 -140 373 227 25 25 chr3 63735544 63735663 -163788915 - L1M2 LINE L1 -4177 2672 2554 * 783 202 5 25 chr3 63735655 63735853 -163788725 - L1M2 LINE L1 -4222 2627 2434 749 196 0 0 chr3 63735932 63736065 -163788513 - AluJb SINE Alu -3 309 177 8122 202 24 25 chr3 63736069 63737596 -163786982 + L1M3e LINE L1 3524 5031 -2534 1138 218 72 56 chr3 63737596 63737986 -163786592 + MSTD LTR MaLR 1 396 0 8122 202 24 25 chr3 63737986 63738621 -163785957 + L1M3e LINE L1 5031 5665 -1900 1326 247 18 52 chr3 63738617 63739059 -163785519 + L1P3 LINE L1 1 427 -5448 * 3126 201 2 24 chr3 63739067 63740045 -163784533 + L1P3 LINE L1 1209 2149 -4312 * 5879 86 16 3 chr3 63740034 63741164 -163783414 + L1PA10 LINE L1 4933 6081 -87 845 90 0 0 chr3 63741266 63741377 -163783201 + L1PA10 LINE L1 6053 6163 -5 4657 170 14 5 chr3 63741388 63742331 -163782247 + L1M3e LINE L1 5653 6603 -962 255 188 152 61 chr3 63742347 63742512 -163782066 - L1MDb LINE L1 -4369 2171 1992 448 239 161 15 chr3 63742512 63742642 -163781936 - FRAM SINE Alu -14 152 4 317 284 11 0 chr3 63742694 63742782 -163781796 - L1MC4 LINE L1 -1339 6703 6615 * 348 247 11 21 chr3 63742741 63742834 -163781744 + L1MC4 LINE L1 6615 6706 -1336 369 192 0 0 chr3 63742861 63742981 -163781597 + (TA)n Simple_repeat Simple_repeat 2 121 0 630 179 28 5 chr3 63743009 63743215 -163781363 - L1MDb LINE L1 -5083 1460 1162 22 0 0 0 chr3 63744101 63744123 -163780455 + AT_rich Low_complexity Low_complexity 1 22 0 446 321 33 22 chr3 63744135 63744319 -163780259 - MER5A DNA MER1_type -2 187 2 219 240 163 50 chr3 63745401 63745557 -163779021 - MIR SINE MIR -33 229 16 556 286 103 68 chr3 63745805 63746434 -163778144 - L2 LINE L2 0 3313 2601 373 221 12 0 chr3 63746474 63746560 -163778018 + L1MC4 LINE L1 5750 5836 -2206 2891 106 30 0 chr3 63746560 63746957 -163777621 + MLT2A2 LTR ERVL 1 414 -39 387 0 0 0 chr3 63746957 63747000 -163777578 + (TG)n Simple_repeat Simple_repeat 2 44 0 2891 106 30 0 chr3 63747000 63747035 -163777543 + MLT2A2 LTR ERVL 414 446 -7 1167 207 62 10 chr3 63747046 63747351 -163777227 + L1ME1 LINE L1 5837 6157 -9 474 263 68 23 chr3 63747891 63748024 -163776554 + L2 LINE L2 3171 3309 -4 1416 96 0 0 chr3 63748788 63748965 -163775613 + AluSc SINE Alu 105 281 -28 477 0 0 0 chr3 63748965 63749018 -163775560 + (CA)n Simple_repeat Simple_repeat 2 54 0 379 175 12 12 chr3 63749518 63749598 -163774980 + MER58A DNA MER1_type 4 83 -24 417 271 23 16 chr3 63749721 63749850 -163774728 + MIR SINE MIR 81 210 -52 227 323 44 39 chr3 63750707 63750872 -163773706 + MIR SINE MIR 32 203 -59 401 328 30 0 chr3 63751711 63751842 -163772736 - MIR SINE MIR -56 206 72 543 204 79 37 chr3 63753028 63753223 -163771355 - MER69 DNA AcHobo -3 2523 1 500 326 30 18 chr3 63753988 63754200 -163770378 - MIR SINE MIR -21 241 30 858 165 16 28 chr3 63754299 63754481 -163770097 - L1MB3 LINE L1 -2 6181 6002 262 212 35 71 chr3 63754708 63754793 -163769785 + MIR SINE MIR 106 187 -75 559 268 21 91 chr3 63754800 63755043 -163769535 - L2 LINE L2 0 3313 3088 1480 158 53 145 chr3 63755608 63756064 -163768514 + MLT2D LTR ERVL 1 414 0 2326 91 3 3 chr3 63756218 63756527 -163768051 - AluSc SINE Alu 0 309 1 368 280 6 76 chr3 63756566 63756723 -163767855 + MIR3 SINE MIR 41 186 -22 1794 169 40 12 chr3 63756855 63757257 -163767321 + LTR37A LTR ERV1 8 420 -6 521 320 100 13 chr3 63757396 63757627 -163766951 + MIR SINE MIR 11 261 -1 241 336 67 15 chr3 63757973 63758107 -163766471 - L3 LINE CR1 -1094 483 343 225 345 88 40 chr3 63759909 63760057 -163764521 + MIR3 SINE MIR 40 194 -14 1210 219 37 21 chr3 63760178 63760503 -163764075 + L1ME1 LINE L1 5817 6146 -20 218 179 0 0 chr3 63760643 63760682 -163763896 - L2 LINE L2 -1 3312 3274 489 254 56 14 chr3 63760717 63760859 -163763719 - MIR SINE MIR -113 149 2 262 228 51 89 chr3 63760978 63761136 -163763442 - L1ME4a LINE L1 -212 5909 5758 595 176 10 0 chr3 63761922 63762024 -163762554 + MER58A DNA MER1_type 1 103 -4 472 311 45 0 chr3 63762074 63762206 -163762372 - L2 LINE L2 -1 3271 3134 1518 172 8 0 chr3 63762357 63762619 -163761959 - AluJb SINE Alu -7 305 42 17908 118 12 5 chr3 63762678 63766282 -163758296 - L1PA10 LINE L1 -11 6157 2521 786 198 27 86 chr3 63766468 63766690 -163757888 - MLT1E2 LTR MaLR -3 623 415 318 161 194 32 chr3 63766686 63766779 -163757799 - MLT1E1 LTR MaLR -546 108 1 * 358 303 119 86 chr3 63767924 63768261 -163756317 + L2 LINE L2 2869 3216 -56 462 311 14 7 chr3 63768416 63768564 -163756014 + MIR3 SINE MIR 37 185 -23 1041 81 4 179 chr3 63769217 63769451 -163755127 + 7SK RNA RNA 1 193 0 592 203 38 51 chr3 63770423 63770581 -163753997 - MER20 DNA MER1_type -37 182 27 380 350 50 17 chr3 63771318 63771498 -163753080 + MIR SINE MIR 64 249 -13 31 26 0 0 chr3 63771500 63771538 -163753040 + AT_rich Low_complexity Low_complexity 1 38 0 207 320 51 39 chr3 63772039 63772117 -163752461 - L2 LINE L2 0 3272 3194 282 232 91 10 chr3 63772552 63772651 -163751927 + LTR67 LTR ERVL 429 535 -22 419 235 91 53 chr3 63772720 63772852 -163751726 + L2 LINE L2 3132 3268 -4 24 32 0 0 chr3 63774855 63774886 -163749692 + AT_rich Low_complexity Low_complexity 1 31 0 278 207 69 168 chr3 63774914 63775117 -163749461 + MIR SINE MIR 80 262 0 286 288 12 0 chr3 63775747 63775827 -163748751 + LTR67 LTR ERVL 126 206 -351 842 292 67 91 chr3 63775833 63776194 -163748384 - L2 LINE L2 0 3313 2945 1118 196 117 3 chr3 63776194 63776485 -163748093 - MER33 DNA MER1_type 0 324 1 842 292 67 91 chr3 63776485 63776712 -163747866 - L2 LINE L2 -368 2945 2746 525 252 139 0 chr3 63776712 63776863 -163747715 + MER45A DNA AcHobo 3 174 -4 842 292 67 91 chr3 63776863 63777018 -163747560 - L2 LINE L2 -567 2746 2589 23 0 0 0 chr3 63778731 63778754 -163745824 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr3 63778771 63778810 -163745768 + AT_rich Low_complexity Low_complexity 1 39 0 1841 206 19 6 chr3 63779252 63779612 -163744966 + MLT1A1 LTR MaLR 1 365 0 1511 164 54 51 chr3 63779833 63780169 -163744409 + MER1B DNA MER1_type 1 337 0 1205 215 70 68 chr3 63780182 63780684 -163743894 + L1ME2 LINE L1 5662 6164 0 324 297 44 0 chr3 63780685 63780776 -163743802 + HAL1 LINE L1 828 922 -1585 450 318 62 11 chr3 63780855 63781129 -163743449 + HAL1 LINE L1 2220 2507 0 4545 142 26 11 chr3 63781139 63781992 -163742586 + L1PB3 LINE L1 5296 6303 0 303 288 7 103 chr3 63782059 63782205 -163742373 + MIR3 SINE MIR 42 173 -35 351 0 0 0 chr3 63784291 63784330 -163740248 + (TG)n Simple_repeat Simple_repeat 2 40 0 255 280 11 65 chr3 63785279 63785372 -163739206 + MLT1J1 LTR MaLR 266 353 -93 604 208 8 0 chr3 63785865 63785990 -163738588 + MIR SINE MIR 137 262 0 1262 167 63 0 chr3 63786498 63786797 -163737781 - MER33 DNA MER1_type -6 318 1 277 306 77 43 chr3 63787474 63787683 -163736895 - L2 LINE L2 -1 3312 3097 465 207 16 41 chr3 63787797 63787918 -163736660 - L1PB4 LINE L1 -48 6108 5991 717 233 112 39 chr3 63787922 63788180 -163736398 + L1MC5 LINE L1 6624 6900 -1061 755 335 57 29 chr3 63788183 63788637 -163735941 - L2 LINE L2 -602 2712 2246 22 56 0 0 chr3 63790732 63790768 -163733810 + AT_rich Low_complexity Low_complexity 1 36 0 308 247 12 0 chr3 63791103 63791188 -163733390 - MER103 DNA DNA -68 98 13 233 293 54 50 chr3 63791549 63791736 -163732842 + MIR3 SINE MIR 15 196 -12 571 320 39 33 chr3 63791769 63792075 -163732503 + L1M4 LINE L1 4736 5043 -1103 1378 181 96 11 chr3 63792082 63792352 -163732226 + AluJo SINE Alu 1 293 -19 384 295 49 74 chr3 63793016 63793211 -163731367 + MIR SINE MIR 17 212 -50 320 222 99 12 chr3 63794770 63794851 -163729727 + MIR3 SINE MIR 119 206 -2 1130 221 121 35 chr3 63796030 63796460 -163728118 + MLT1C LTR MaLR 1 467 0 261 100 267 0 chr3 63797174 63797234 -163727344 - MER103 DNA DNA -81 85 10 236 317 37 11 chr3 63798606 63798740 -163725838 - MIR SINE MIR -58 150 27 257 295 48 59 chr3 63799245 63799516 -163725062 - MER102a DNA MER1_type -2 328 61 208 331 144 46 chr3 63800029 63800419 -163724159 - L2 LINE L2 -39 3233 2806 752 177 183 11 chr3 63800634 63800820 -163723758 + MER20 DNA MER1_type 2 219 0 411 21 0 0 chr3 63800848 63800896 -163723682 + (TCTA)n Simple_repeat Simple_repeat 3 50 0 183 368 18 0 chr3 63801079 63801136 -163723442 + L2 LINE L2 3215 3272 0 815 265 40 4 chr3 63801376 63801629 -163722949 + MER110 LTR ERV1 176 437 -54 948 286 97 43 chr3 63801840 63802398 -163722180 - L2 LINE L2 0 3313 2688 1646 196 3 37 chr3 63802398 63802720 -163721858 - AluJo SINE Alu -1 311 1 948 286 97 43 chr3 63802720 63802984 -163721594 - L2 LINE L2 -625 2688 2440 495 262 67 91 chr3 63804137 63804435 -163720143 + MLT1K LTR MaLR 295 585 -3 325 221 110 62 chr3 63804523 63804668 -163719910 + MIR3 SINE MIR 42 193 -15 350 337 121 11 chr3 63805081 63805345 -163719233 + L1 LINE L1 3705 3997 -2149 235 173 19 0 chr3 63806040 63806092 -163718486 + (TTAAA)n Simple_repeat Simple_repeat 5 57 0 2636 114 17 24 chr3 63806119 63806539 -163718039 - L1PA14 LINE L1 -1 6160 5744 591 52 0 0 chr3 63806642 63806719 -163717859 - L1PA14 LINE L1 -407 5754 5678 228 295 58 29 chr3 63806775 63806914 -163717664 + L1MC/D LINE L1 5758 5900 -1908 247 176 59 78 chr3 63807440 63807542 -163717036 + L1ME LINE L1 5533 5632 -489 689 157 0 19 chr3 63808491 63808650 -163715928 + CT-rich Low_complexity Low_complexity 1 156 0 363 132 0 0 chr3 63809644 63809712 -163714866 + (CA)n Simple_repeat Simple_repeat 2 69 0 1277 216 48 55 chr3 63810786 63811131 -163713447 - MER21B LTR ERV1 -51 812 469 2512 208 96 31 chr3 63811131 63811809 -163712769 - MER72 LTR ERV1 0 722 1 1277 216 48 55 chr3 63811809 63811861 -163712717 - MER21B LTR ERV1 -394 469 418 1758 179 13 89 chr3 63811901 63812360 -163712218 + LTR8 LTR ERV1 1 424 -267 634 212 0 0 chr3 63812360 63812478 -163712100 + LTR8 LTR ERV1 574 691 0 569 236 114 102 chr3 63812481 63812815 -163711763 - MER21B LTR ERV1 -525 338 1 2564 179 38 39 chr3 63812882 63813441 -163711137 + MER74A LTR ERVL 1 558 0 504 338 42 17 chr3 63814104 63814341 -163710237 - MIR SINE MIR -2 260 18 204 316 60 8 chr3 63814789 63814906 -163709672 + MIR SINE MIR 130 252 -10 337 236 171 23 chr3 63815265 63815401 -163709177 + MIR SINE MIR 2 149 -59 372 273 83 0 chr3 63815487 63815608 -163708970 + MIR SINE MIR 132 262 0 256 270 110 0 chr3 63815733 63815833 -163708745 - MIR SINE MIR -27 235 125 2501 72 0 0 chr3 63815850 63816154 -163708424 - AluY SINE Alu -7 304 1 1126 211 9 5 chr3 63816171 63816394 -163708184 - MER58A DNA MER1_type 0 224 1 468 331 82 62 chr3 63816649 63816954 -163707624 + L2 LINE L2 2951 3261 -11 233 333 39 29 chr3 63816996 63817098 -163707480 - MIR SINE MIR -83 125 23 754 216 112 50 chr3 63817283 63817542 -163707036 + MER102a DNA MER1_type 32 306 -24 394 339 50 14 chr3 63818223 63818418 -163706160 + MIR SINE MIR 5 206 -56 207 125 0 0 chr3 63818418 63818458 -163706120 + (TATG)n Simple_repeat Simple_repeat 3 42 0 245 283 126 13 chr3 63819301 63819460 -163705118 + L1MC/D LINE L1 5710 5886 -1922 1906 169 8 46 chr3 63820367 63820740 -163703838 + MLT1A1 LTR MaLR 1 359 -6 577 273 70 33 chr3 63820741 63820983 -163703595 + L2 LINE L2 2514 2764 -550 789 182 28 57 chr3 63823150 63823397 -163701181 - L1MC5 LINE L1 -32 7929 7690 958 184 0 0 chr3 63823490 63823675 -163700903 + L1 LINE L1 3809 3993 -2153 1422 208 28 7 chr3 63823712 63824000 -163700578 + AluJo SINE Alu 19 312 0 667 106 24 0 chr3 63824001 63824124 -163700454 + GA-rich Low_complexity Low_complexity 2 127 0 4240 144 14 10 chr3 63824135 63824664 -163699914 + L1 LINE L1 4233 4767 -1379 2044 141 17 0 chr3 63824664 63824961 -163699617 + AluSx SINE Alu 1 302 -10 4240 144 14 10 chr3 63824961 63825215 -163699363 + L1 LINE L1 4767 5019 -1127 330 67 283 0 chr3 63825216 63825306 -163699272 + AluSc SINE Alu 203 309 0 1920 130 25 6 chr3 63828886 63829208 -163695370 + L1MA5 LINE L1 5973 6300 0 1034 50 0 0 chr3 63829744 63829864 -163694714 + AluYa5/8 SINE Alu 171 290 -21 265 254 0 0 chr3 63829997 63830072 -163694506 + (TATG)n Simple_repeat Simple_repeat 1 75 0 2060 148 3 0 chr3 63830374 63830684 -163693894 + AluSx SINE Alu 1 311 -1 415 264 161 21 chr3 63830764 63830957 -163693621 + MIR SINE MIR 15 234 -28 264 226 0 0 chr3 63831605 63831658 -163692920 + L2 LINE L2 3261 3313 0 2121 130 0 19 chr3 63832155 63832471 -163692107 - AluSx SINE Alu -2 310 1 213 255 0 0 chr3 63832706 63832753 -163691825 + (TAA)n Simple_repeat Simple_repeat 1 47 0 266 327 50 14 chr3 63832808 63832956 -163691622 - MIR SINE MIR -65 143 18 582 89 20 10 chr3 63833640 63833741 -163690837 - L1PA15 LINE L1 -1 6164 6063 1320 179 9 9 chr3 63834709 63834932 -163689646 - MER58A DNA MER1_type 0 224 2 887 178 6 0 chr3 63834949 63835106 -163689472 + MER3 DNA MER1_type 27 184 -25 2512 70 0 3 chr3 63835265 63835577 -163689001 - AluY SINE Alu 0 311 1 922 221 59 44 chr3 63836330 63836651 -163687927 + MER46C DNA MER2_type 9 334 -4 811 319 48 33 chr3 63837607 63837973 -163686605 - L1ME3A LINE L1 -219 5934 5558 2105 108 3 0 chr3 63837973 63838260 -163686318 + AluSg SINE Alu 13 300 -10 811 319 48 33 chr3 63838260 63838373 -163686205 - L1ME3A LINE L1 -595 5558 5448 523 256 47 20 chr3 63838444 63838701 -163685877 + MLT1H LTR MaLR 19 267 -288 1131 301 60 43 chr3 63838736 63839761 -163684817 - L1ME3A LINE L1 -2058 4071 3030 692 295 62 103 chr3 63839800 63840547 -163684031 - L1ME3A LINE L1 -5205 914 209 2853 79 0 14 chr3 63840547 63840916 -163683662 + THE1B LTR MaLR 1 364 0 692 295 62 103 chr3 63840916 63841062 -163683516 - L1ME3A LINE L1 -5910 209 58 321 336 41 0 chr3 63841219 63841365 -163683213 + MER117 DNA MER1_type 1 152 -45 22 0 0 0 chr3 63841994 63842016 -163682562 + AT_rich Low_complexity Low_complexity 1 22 0 2049 132 7 7 chr3 63843225 63843528 -163681050 + AluSx SINE Alu 1 303 -9 234 256 101 82 chr3 63843833 63844040 -163680538 - MIR SINE MIR -32 230 20 183 80 0 0 chr3 63844688 63844713 -163679865 + (CA)n Simple_repeat Simple_repeat 1 25 0 548 304 36 0 chr3 63845278 63845446 -163679132 - MIR SINE MIR 0 262 89 1891 113 0 4 chr3 63845513 63845769 -163678809 - AluSx SINE Alu -19 293 39 21 36 0 0 chr3 63846379 63846407 -163678171 + AT_rich Low_complexity Low_complexity 1 28 0 1794 196 6 25 chr3 63848001 63848358 -163676220 + MLT1A2 LTR MaLR 1 350 -24 1447 141 0 0 chr3 63848381 63848587 -163675991 - AluSx SINE Alu -106 206 1 347 264 22 0 chr3 63849397 63849488 -163675090 - MER103 DNA DNA -47 119 27 187 276 133 20 chr3 63849681 63849779 -163674799 - L2 LINE L2 -6 3307 3199 243 290 29 0 chr3 63850378 63850447 -163674131 - L2 LINE L2 0 3313 3243 466 221 153 0 chr3 63850513 63850651 -163673927 + MER5A DNA MER1_type 4 165 -24 285 337 21 0 chr3 63852207 63852302 -163672276 + MIR SINE MIR 158 254 -8 230 341 45 30 chr3 63854009 63854141 -163670437 - MER5B DNA MER1_type -8 170 37 404 269 174 0 chr3 63854173 63854322 -163670256 - MIR SINE MIR 0 262 88 355 320 0 24 chr3 63855358 63855483 -163669095 - MIR3 SINE MIR -9 199 78 381 226 150 23 chr3 63855746 63855879 -163668699 - MIR SINE MIR -13 249 100 2772 136 2 7 chr3 63856110 63856538 -163668040 + MSTA LTR MaLR 1 426 -2 12423 205 37 21 chr3 63856727 63858170 -163666408 - L1PA16 LINE L1 -5 6161 4742 2255 182 29 2 chr3 63858170 63858583 -163665995 + MSTB LTR MaLR 3 426 0 12423 205 37 21 chr3 63858583 63859678 -163664900 - L1PA16 LINE L1 -1424 4742 3666 240 114 0 68 chr3 63859678 63859722 -163664856 - MER61E LTR ERV1 -487 82 42 12423 205 37 21 chr3 63859722 63861269 -163663309 - L1PA16 LINE L1 -2500 3666 1965 4589 160 48 2 chr3 63861319 63862196 -163662382 - L1MB7 LINE L1 0 6184 5263 880 235 59 89 chr3 63862206 63862540 -163662038 - L1ME3A LINE L1 -8 6162 5844 1265 51 0 0 chr3 63862540 63862697 -163661881 - L1PA3 LINE L1 -1 6154 5998 880 235 59 89 chr3 63862697 63862821 -163661757 - L1ME3A LINE L1 -326 5844 5718 2540 265 75 37 chr3 63862859 63864142 -163660436 - L1ME3A LINE L1 -1698 4448 3118 485 256 56 25 chr3 63865297 63865457 -163659121 + MIR SINE MIR 13 177 -85 679 228 52 60 chr3 63866720 63866953 -163657625 + MLT1K LTR MaLR 331 561 -27 1228 124 0 0 chr3 63867806 63867984 -163656594 - AluSg/x SINE Alu -1 309 132 2330 80 3 3 chr3 63867984 63868284 -163656294 - AluY SINE Alu -11 300 1 31 0 0 0 chr3 63868867 63868898 -163655680 + AT_rich Low_complexity Low_complexity 1 31 0 210 244 0 0 chr3 63869221 63869266 -163655312 + T-rich Low_complexity Low_complexity 3 47 0 2204 120 0 0 chr3 63871921 63872213 -163652365 + AluSc SINE Alu 4 295 -14 1073 181 108 9 chr3 63872877 63873109 -163651469 + MER63 DNA MER1_type 724 978 -84 461 315 78 0 chr3 63874076 63874362 -163650216 + MLT1J2 LTR MaLR 93 413 -37 297 260 240 20 chr3 63874896 63875042 -163649536 + MIR3 SINE MIR 14 191 -17 485 145 36 0 chr3 63875545 63875628 -163648950 - MLT1G LTR MaLR -10 580 495 454 225 288 1 chr3 63875636 63875786 -163648792 - MLT1G LTR MaLR -376 191 2 2649 286 63 39 chr3 63875916 63876177 -163648401 - L2 LINE L2 -64 3249 2996 1409 147 9 17 chr3 63876177 63876408 -163648170 + MER30 DNA MER1_type 1 229 -1 2649 286 63 39 chr3 63876408 63877511 -163647067 - L2 LINE L2 -317 2996 1812 2941 145 36 0 chr3 63877582 63878051 -163646527 + L1MB2 LINE L1 5683 6168 -3 1336 201 5 5 chr3 63878527 63878751 -163645827 + MER58A DNA MER1_type 1 224 0 2774 197 76 4 chr3 63878810 63879338 -163645240 + MLT1F1 LTR MaLR 2 567 0 21 0 0 0 chr3 63879457 63879478 -163645100 + AT_rich Low_complexity Low_complexity 1 21 0 365 231 102 37 chr3 63879503 63879611 -163644967 + L2 LINE L2 3198 3312 -1 642 287 31 35 chr3 63879690 63879951 -163644627 - MIR SINE MIR -1 261 2 454 310 95 29 chr3 63880169 63880517 -163644061 + L1M4 LINE L1 2497 2867 -3279 337 224 0 13 chr3 63880553 63880629 -163643949 + MIR SINE MIR 58 132 -130 237 139 0 47 chr3 63880901 63880944 -163643634 - L2 LINE L2 -84 3229 3189 313 313 0 0 chr3 63880969 63881068 -163643510 - L2 LINE L2 -394 2919 2821 22 70 0 0 chr3 63881096 63881139 -163643439 + AT_rich Low_complexity Low_complexity 1 43 0 192 321 119 9 chr3 63881515 63881624 -163642954 - L2 LINE L2 -16 3297 3177 274 342 89 30 chr3 63881663 63881900 -163642678 - MIR SINE MIR 0 262 12 245 333 20 20 chr3 63882169 63882271 -163642307 - L3 LINE CR1 -212 1365 1264 572 212 0 0 chr3 63882351 63882450 -163642128 + 5S rRNA rRNA 23 121 0 1190 213 23 114 chr3 63882464 63882892 -163641686 + MLT1E2-int LTR MaLR 982 1370 -1 2633 211 31 62 chr3 63882893 63883537 -163641041 + MLT1E2 LTR MaLR 1 624 -2 253 351 40 27 chr3 63883543 63883691 -163640887 - L3 LINE CR1 -160 1417 1268 2301 104 0 22 chr3 63883746 63884063 -163640515 - AluSq SINE Alu -3 310 1 1194 262 56 24 chr3 63884142 63884554 -163640024 - LTR16A1 LTR ERVL 0 457 33 333 273 58 87 chr3 63884767 63885009 -163639569 - L2 LINE L2 -3 3310 3076 370 290 8 0 chr3 63885135 63885259 -163639319 - L2 LINE L2 -254 3059 2935 252 86 0 0 chr3 63885777 63885812 -163638766 + (TGG)n Simple_repeat Simple_repeat 1 35 0 348 288 174 38 chr3 63885910 63886146 -163638432 - L3 LINE CR1 -15 1562 1295 577 317 21 25 chr3 63886165 63886408 -163638170 - MIR SINE MIR -12 250 9 633 264 72 40 chr3 63886419 63886669 -163637909 - L3 LINE CR1 -275 1302 1045 614 318 126 35 chr3 63886936 63887458 -163637120 + Tigger8 DNA MER2_type 55 624 -42 576 214 70 75 chr3 63887461 63887662 -163636916 + MIR SINE MIR 59 258 -4 1635 177 3 21 chr3 63887673 63887961 -163636617 - AluJo SINE Alu -27 285 3 838 176 0 0 chr3 63887962 63888098 -163636480 - AluJb SINE Alu -176 136 1 382 193 51 3 chr3 63888696 63888796 -163635782 - MIR3 SINE MIR -42 166 90 248 269 255 47 chr3 63889173 63889322 -163635256 - MIR SINE MIR -4 258 79 212 289 0 0 chr3 63889562 63889614 -163634964 + L2 LINE L2 3261 3312 -1 475 299 36 6 chr3 63889701 63889868 -163634710 - MIR SINE MIR -77 185 14 302 252 54 68 chr3 63890431 63890463 -163634115 + L1ME4a LINE L1 5965 5996 -125 2013 120 18 0 chr3 63890463 63890746 -163633832 + AluSg SINE Alu 7 294 -16 302 252 54 68 chr3 63890746 63890860 -163633718 + L1ME4a LINE L1 5996 6109 -12 552 251 70 23 chr3 63890889 63891060 -163633518 - MIR SINE MIR -61 201 23 414 320 7 33 chr3 63891255 63891408 -163633170 + L2 LINE L2 3164 3312 -1 484 220 45 50 chr3 63891469 63891637 -163632941 + MLT1D LTR MaLR 18 193 -312 314 153 0 34 chr3 63891636 63891695 -163632883 + Alu SINE Alu 238 294 -8 * 1923 125 95 10 chr3 63891701 63891783 -163632795 - MER7C DNA MER2_type -2696 332 258 182 37 37 0 chr3 63891783 63891810 -163632768 + (TGAG)n Simple_repeat Simple_repeat 3 30 0 1923 125 95 10 chr3 63891810 63892031 -163632547 - MER7C DNA MER2_type -2770 258 3 3369 158 28 9 chr3 63892143 63892682 -163631896 - MER44D DNA MER2_type 0 605 2 312 70 0 0 chr3 63892703 63892746 -163631832 + (TG)n Simple_repeat Simple_repeat 2 44 0 1994 144 10 0 chr3 63892773 63893071 -163631507 + AluJb SINE Alu 1 301 -11 455 284 35 12 chr3 63893221 63893390 -163631188 - MER97a DNA MER1_type? -720 174 2 186 43 0 0 chr3 63893716 63893739 -163630839 + (T)n Simple_repeat Simple_repeat 1 23 0 671 274 38 11 chr3 63895066 63895252 -163629326 + MIR SINE MIR 10 200 -62 706 209 39 11 chr3 63895340 63895514 -163629064 - MLT1J2 LTR MaLR -268 179 1 307 283 0 81 chr3 63895514 63895684 -163628894 + MER112 DNA MER1_type 78 233 -27 372 317 171 24 chr3 63896243 63896827 -163627751 - L2 LINE L2 -527 2787 2118 732 276 168 53 chr3 63896931 63897458 -163627120 - L2 LINE L2 -1 3312 2656 1694 180 3 7 chr3 63897458 63897741 -163626837 - AluJo SINE Alu -30 282 1 732 276 168 53 chr3 63897741 63898011 -163626567 - L2 LINE L2 -657 2656 2419 732 238 67 21 chr3 63898670 63898863 -163625715 - MER63A DNA MER1_type -5 205 4 291 274 48 0 chr3 63898885 63898969 -163625609 - MIR SINE MIR -6 256 169 581 141 20 0 chr3 63900471 63900570 -163624008 - L1MA9 LINE L1 -6 6306 6206 933 128 187 7 chr3 63900570 63900860 -163623718 + L1MA9 LINE L1 5823 6196 -116 2136 102 0 33 chr3 63901832 63902137 -163622441 + AluSg1 SINE Alu 1 295 -14 416 287 17 17 chr3 63902173 63902288 -163622290 + L2 LINE L2 3199 3313 0 2064 129 4 0 chr3 63902409 63902733 -163621845 - AluSc SINE Alu 0 325 1 312 83 0 0 chr3 63902850 63902898 -163621680 + (TG)n Simple_repeat Simple_repeat 2 49 0 376 243 63 18 chr3 63904045 63904113 -163620465 - MIR SINE MIR -119 143 67 393 58 0 0 chr3 63904113 63904165 -163620413 + (CA)n Simple_repeat Simple_repeat 2 53 0 376 243 63 18 chr3 63904165 63904207 -163620371 - MIR SINE MIR -195 67 28 209 308 31 0 chr3 63904318 63904383 -163620195 + MIR SINE MIR 188 254 -8 424 230 101 73 chr3 63905179 63905496 -163619082 - L1ME4a LINE L1 -2 6119 5794 241 301 172 11 chr3 63905666 63905759 -163618819 + L2 LINE L2 3205 3312 -1 448 318 39 0 chr3 63907390 63907519 -163617059 + L2 LINE L2 3138 3271 -1 279 276 41 0 chr3 63908762 63908860 -163615718 - MIR SINE MIR -57 205 104 623 230 7 7 chr3 63908863 63908998 -163615580 + MER106B DNA MER1_type 2 136 -923 5544 149 11 48 chr3 63909026 63911008 -163613570 + L1PB1 LINE L1 4134 6040 -111 * 43371 48 6 0 chr3 63911002 63917082 -163607496 + L1PA4 LINE L1 41 6154 -1 1063 66 0 15 chr3 63917089 63917225 -163607353 + L1PB1 LINE L1 6018 6151 0 24 0 0 0 chr3 63917225 63917249 -163607329 + AT_rich Low_complexity Low_complexity 1 24 0 387 326 83 80 chr3 63917321 63917597 -163606981 - L2 LINE L2 0 3272 2996 280 330 162 21 chr3 63917752 63917943 -163606635 + MIR SINE MIR 41 258 -4 620 248 134 88 chr3 63918334 63918847 -163605731 - LTR67 LTR ERVL -5 552 16 358 247 7 58 chr3 63918871 63919025 -163605553 - Charlie7 DNA MER1_type 0 2612 2467 192 167 135 0 chr3 63919430 63919487 -163605091 - MIR SINE MIR -56 152 83 2343 65 24 0 chr3 63919555 63919845 -163604733 + AluY SINE Alu 1 297 -14 292 331 85 82 chr3 63920362 63920667 -163603911 + L2 LINE L2 2967 3272 0 198 0 0 0 chr3 63921451 63921473 -163603105 + (A)n Simple_repeat Simple_repeat 1 22 0 379 279 168 44 chr3 63922023 63922291 -163602287 + L1ME LINE L1 5456 5752 -369 1845 248 92 8 chr3 63923188 63923712 -163600866 + MER90 LTR ERV1 8 575 0 284 226 24 119 chr3 63924229 63924313 -163600265 + L2 LINE L2 3187 3262 -10 710 191 0 0 chr3 63924371 63924486 -163600092 + FRAM SINE Alu 32 146 -30 498 329 111 16 chr3 63924675 63925107 -163599471 + L2 LINE L2 633 1105 -2209 29 0 0 0 chr3 63925345 63925374 -163599204 + AT_rich Low_complexity Low_complexity 1 29 0 1495 242 125 44 chr3 63925574 63926123 -163598455 + L1ME2 LINE L1 5480 6088 -76 2811 161 55 19 chr3 63926123 63926651 -163597927 - L1MB3 LINE L1 -2 6181 5635 1495 242 125 44 chr3 63926651 63926733 -163597845 + L1ME2 LINE L1 6088 6162 -2 450 252 0 57 chr3 63927018 63927141 -163597437 - L2 LINE L2 -11 3302 3187 268 250 194 0 chr3 63927159 63927267 -163597311 + L2 LINE L2 3158 3286 -27 214 314 59 42 chr3 63927291 63927409 -163597169 - MIR3 SINE MIR -38 170 51 2328 96 20 0 chr3 63927795 63928098 -163596480 - AluSx SINE Alu -3 309 1 811 194 0 15 chr3 63928357 63928491 -163596087 - FLAM_C SINE Alu -10 133 2 532 231 231 6 chr3 63928918 63929078 -163595500 - MIR SINE MIR -62 200 5 1728 181 13 7 chr3 63929902 63930201 -163594377 - AluJo SINE Alu -11 301 1 208 176 0 20 chr3 63930233 63930284 -163594294 + A-rich Low_complexity Low_complexity 3 52 0 423 283 236 15 chr3 63930705 63931104 -163593474 + L2 LINE L2 2824 3310 -3 2351 196 6 57 chr3 63931189 63931273 -163593305 - MLT1D LTR MaLR 0 505 418 1749 85 105 78 chr3 63931273 63931568 -163593010 + AluSq SINE Alu 3 305 -8 2351 196 6 57 chr3 63931568 63931994 -163592584 - MLT1D LTR MaLR -87 418 21 1814 199 63 26 chr3 63932505 63932887 -163591691 - MSTD LTR MaLR 0 396 1 352 285 121 6 chr3 63933120 63933285 -163591293 - L2 LINE L2 -3 3310 3127 427 250 0 96 chr3 63933448 63933604 -163590974 + Charlie8 DNA MER1_type 189 329 -2088 1126 142 10 39 chr3 63933606 63933811 -163590767 - MER3 DNA MER1_type 0 209 11 214 349 41 27 chr3 63933908 63934054 -163590524 - L2 LINE L2 -192 3080 2933 327 196 13 0 chr3 63935966 63936031 -163588547 + MER115 DNA AcHobo 9 62 -631 227 286 48 0 chr3 63936590 63936653 -163587925 + MER115 DNA AcHobo 619 684 -9 22 35 0 0 chr3 63936796 63936825 -163587753 + AT_rich Low_complexity Low_complexity 1 29 0 1906 132 40 3 chr3 63937167 63937463 -163587115 + AluSx SINE Alu 1 307 -5 386 224 98 21 chr3 63938480 63938623 -163585955 - MER104 DNA Tc2 0 180 27 1723 206 6 6 chr3 63938766 63939087 -163585491 - L1PB4 LINE L1 -8 6148 5828 2518 98 23 10 chr3 63939093 63939489 -163585089 + L1P5 LINE L1 5254 5654 -502 945 229 33 14 chr3 63939757 63939971 -163584607 + MER58A DNA MER1_type 1 218 -6 3261 86 26 0 chr3 63939971 63940400 -163584178 + L1PB2 LINE L1 5709 6148 -3 25 0 0 0 chr3 63940400 63940425 -163584153 + AT_rich Low_complexity Low_complexity 1 25 0 216 196 0 22 chr3 63940641 63940687 -163583891 + GA-rich Low_complexity Low_complexity 2 46 0 248 277 0 15 chr3 63941713 63941778 -163582800 - L2 LINE L2 -2 3311 3248 26 30 0 0 chr3 63941967 63942000 -163582578 + AT_rich Low_complexity Low_complexity 1 33 0 5894 126 141 22 chr3 63942004 63943092 -163581486 + Tigger3b DNA MER2_type 1 1217 -14 42 0 0 0 chr3 63943102 63943144 -163581434 + AT_rich Low_complexity Low_complexity 1 42 0 325 58 39 0 chr3 63943417 63943469 -163581109 + (TG)n Simple_repeat Simple_repeat 2 55 0 1999 92 81 0 chr3 63943503 63943774 -163580804 - AluSx SINE Alu -19 293 1 198 0 0 0 chr3 63944027 63944049 -163580529 + (A)n Simple_repeat Simple_repeat 1 22 0 1145 162 9 53 chr3 63944156 63944384 -163580194 - MER20 DNA MER1_type -1 218 1 482 297 162 5 chr3 63944419 63944641 -163579937 - MIR SINE MIR 0 262 6 349 313 82 27 chr3 63945668 63945884 -163578694 + MIR3 SINE MIR 7 246 -16 1753 182 0 13 chr3 63946026 63946328 -163578250 - AluJo SINE Alu -14 298 1 673 234 19 56 chr3 63947218 63947268 -163577310 + MIR SINE MIR 52 102 -160 2521 48 0 3 chr3 63947268 63947560 -163577018 - AluY SINE Alu -20 291 1 673 234 19 56 chr3 63947560 63947723 -163576855 + MIR SINE MIR 102 257 -5 2461 76 0 0 chr3 63947786 63948088 -163576490 - AluSg SINE Alu -6 304 3 290 348 0 0 chr3 63949616 63949728 -163574850 + MER103 DNA DNA 11 122 -44 2351 102 0 7 chr3 63950408 63950712 -163573866 + AluSp SINE Alu 1 302 -11 827 199 40 0 chr3 63951706 63951857 -163572721 + FRAM SINE Alu 8 164 -12 208 246 0 72 chr3 63952520 63952589 -163571989 - L2 LINE L2 0 3272 3209 492 278 34 81 chr3 63952619 63952828 -163571750 + MIR SINE MIR 59 257 -5 449 228 20 30 chr3 63953764 63953865 -163570713 + MER5A DNA MER1_type 10 109 -80 2096 128 44 68 chr3 63954536 63954920 -163569658 + THE1C LTR MaLR 1 375 0 436 183 191 0 chr3 63954936 63955051 -163569527 + MIR SINE MIR 72 208 -54 1258 191 0 43 chr3 63956144 63956311 -163568267 - MER58A DNA MER1_type -2197 223 67 2474 58 10 0 chr3 63956311 63956619 -163567959 + AluY SINE Alu 1 311 0 1258 191 0 43 chr3 63956619 63956681 -163567897 - MER58A DNA MER1_type -2353 67 4 2173 108 7 0 chr3 63956912 63957207 -163567371 - AluSp SINE Alu -16 297 1 21 0 0 0 chr3 63957540 63957561 -163567017 + AT_rich Low_complexity Low_complexity 1 21 0 417 20 0 0 chr3 63957579 63957629 -163566949 + (ATATG)n Simple_repeat Simple_repeat 2 51 0 249 281 16 0 chr3 63958543 63958607 -163565971 - MIR SINE MIR -190 72 8 498 178 59 0 chr3 63958903 63959004 -163565574 - MER3 DNA MER1_type -70 139 33 322 279 15 90 chr3 63959007 63959208 -163565370 + L2 LINE L2 2896 3081 -191 236 335 81 78 chr3 63959467 63959637 -163564941 + L2 LINE L2 2921 3094 -178 3830 62 0 2 chr3 63959637 63960101 -163564477 - L1PA12 LINE L1 0 6168 5706 236 335 81 78 chr3 63960101 63960264 -163564314 + L2 LINE L2 3094 3255 -17 297 239 18 71 chr3 63961146 63961259 -163563319 + L1M2 LINE L1 2 108 -5847 9636 184 22 10 chr3 63961437 63962250 -163562328 + L1M2 LINE L1 3208 4009 -2025 2188 128 0 0 chr3 63962250 63962546 -163562032 + AluSx SINE Alu 1 296 -16 9636 184 22 10 chr3 63962546 63963682 -163560896 + L1M2 LINE L1 4009 5181 -853 1339 176 0 5 chr3 63963682 63963892 -163560686 + AluSx SINE Alu 1 209 -103 788 266 102 19 chr3 63963943 63964601 -163559977 + L1ME2 LINE L1 5470 5927 -237 1976 198 7 26 chr3 63964036 63964215 -163560363 + L1MA9 LINE L1 5603 5784 -528 1574 146 0 13 chr3 63964215 63964454 -163560124 - MER46A DNA MER2_type 0 236 1 1976 198 7 26 chr3 63964454 63964694 -163559884 + L1MA9 LINE L1 5784 6014 -298 2274 80 10 29 chr3 63964694 63965006 -163559572 + AluSq SINE Alu 1 306 -7 183 245 0 20 chr3 63965350 63965399 -163559179 - MIR SINE MIR -114 148 101 2580 90 3 0 chr3 63966352 63966684 -163557894 + L1PA13 LINE L1 5831 6163 0 270 313 0 0 chr3 63966722 63966789 -163557789 - L2 LINE L2 -5 3308 3242 25 0 0 0 chr3 63967302 63967327 -163557251 + AT_rich Low_complexity Low_complexity 1 25 0 961 93 7 7 chr3 63967868 63968007 -163556571 - AluY SINE Alu -171 140 2 764 188 27 16 chr3 63968007 63968193 -163556385 + L1M2 LINE L1 5192 5379 -821 633 232 0 0 chr3 63968193 63968305 -163556273 + FLAM_A SINE Alu 1 112 -30 273 297 41 48 chr3 63968411 63968556 -163556022 + L1M2 LINE L1 5492 5635 -565 842 168 21 31 chr3 63968978 63969127 -163555451 + L1MA9 LINE L1 6086 6234 -78 2117 161 36 0 chr3 63969127 63969463 -163555115 + MER7A DNA MER2_type 1 346 0 842 168 21 31 chr3 63969463 63969504 -163555074 + L1MA9 LINE L1 6234 6274 -38 276 125 0 0 chr3 63969975 63970015 -163554563 + L1MA9 LINE L1 6226 6265 -47 2290 105 0 10 chr3 63971758 63972072 -163552506 + AluY SINE Alu 1 311 0 663 182 36 0 chr3 63972252 63972362 -163552216 - MER81 DNA DNA 0 114 1 402 281 133 0 chr3 63972463 63972591 -163551987 + MIR SINE MIR 45 189 -73 3029 89 38 0 chr3 63972667 63973058 -163551520 - L1PA15 LINE L1 -7 6158 5753 2023 146 13 0 chr3 63973548 63973850 -163550728 + AluSx SINE Alu 1 306 -6 1462 199 57 3 chr3 63974309 63974605 -163549973 - AluJo SINE Alu 0 312 1 667 132 4 243 chr3 63974766 63975001 -163549577 - MER91B DNA MER1_type 0 190 12 945 185 71 71 chr3 63975058 63975095 -163549483 + MER8 DNA MER2_type 1 37 -202 2118 171 0 20 chr3 63975095 63975439 -163549139 + MER1B DNA MER1_type 1 337 0 945 185 71 71 chr3 63975439 63975639 -163548939 + MER8 DNA MER2_type 36 238 -1 25 0 0 0 chr3 63975727 63975752 -163548826 + AT_rich Low_complexity Low_complexity 1 25 0 398 242 159 15 chr3 63976501 63976633 -163547945 - MIR SINE MIR -110 152 2 251 283 262 14 chr3 63976653 63976798 -163547780 - MER5A DNA MER1_type 0 189 9 1129 186 23 36 chr3 63976814 63977035 -163547543 + MER20 DNA MER1_type 1 218 -1 1322 149 50 9 chr3 63977791 63978012 -163546566 + MER30 DNA MER1_type 1 230 0 192 97 0 0 chr3 63978187 63978218 -163546360 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 249 350 118 17 chr3 63978243 63978480 -163546098 + L2 LINE L2 2035 2295 -1019 650 273 33 14 chr3 63978971 63979208 -163545370 + MIR SINE MIR 17 261 -1 1475 263 37 37 chr3 63979333 63979627 -163544951 + L1MD3 LINE L1 7527 7823 -172 2504 138 55 29 chr3 63979627 63980048 -163544530 - MSTB1 LTR MaLR 0 432 1 1475 263 37 37 chr3 63980048 63980209 -163544369 + L1MD3 LINE L1 7822 7982 -13 433 328 149 33 chr3 63980253 63980945 -163543633 - L2 LINE L2 -6 3266 2443 2862 180 4 36 chr3 63980945 63981467 -163543111 + MLT1D LTR MaLR 1 505 0 433 328 149 33 chr3 63981467 63981702 -163542876 - L2 LINE L2 -829 2443 2236 450 197 177 20 chr3 63981897 63982044 -163542534 + MIR SINE MIR 79 248 -14 2798 13 3 0 chr3 63982217 63982521 -163542057 + AluYa5 SINE Alu 1 305 -6 236 306 59 12 chr3 63982594 63982679 -163541899 - L2 LINE L2 -47 3225 3137 264 253 81 50 chr3 63982727 63982826 -163541752 - MIR SINE MIR -7 255 154 274 235 174 20 chr3 63983590 63983688 -163540890 + MIR SINE MIR 81 193 -69 207 0 0 0 chr3 63983739 63983762 -163540816 + (CTG)n Simple_repeat Simple_repeat 1 23 0 927 133 15 0 chr3 63984409 63984544 -163540034 + FLAM_C SINE Alu 1 137 -6 255 193 0 0 chr3 63985989 63986072 -163538506 + CT-rich Low_complexity Low_complexity 2 84 0 492 18 0 0 chr3 63986072 63986129 -163538449 + (CA)n Simple_repeat Simple_repeat 1 57 0 598 198 62 57 chr3 63986369 63986546 -163538032 + MER20 DNA MER1_type 42 219 0 2471 84 3 3 chr3 63987190 63987498 -163537080 + AluSp SINE Alu 1 308 -5 534 217 101 92 chr3 63987675 63987882 -163536696 - MER58C DNA MER1_type 0 215 7 412 346 43 17 chr3 63988773 63989007 -163535571 + MIR SINE MIR 13 252 -10 306 336 137 18 chr3 63990349 63990691 -163533887 + L2 LINE L2 2548 2930 -384 417 269 36 54 chr3 63990875 63991042 -163533536 + MIR SINE MIR 7 170 -92 207 172 207 0 chr3 63991360 63991418 -163533160 - L2 LINE L2 -1 3312 3243 315 253 24 0 chr3 63993134 63993217 -163531361 - MER103 DNA DNA -9 157 73 1686 144 19 81 chr3 63993360 63993680 -163530898 + AluJb SINE Alu 1 300 -12 465 259 161 7 chr3 63993685 63993828 -163530750 + MIR SINE MIR 6 170 -92 * 602 268 160 7 chr3 63993812 63994099 -163530479 + L2 LINE L2 2919 3249 -64 465 110 0 0 chr3 63994127 63994200 -163530378 + (TGAA)n Simple_repeat Simple_repeat 3 75 0 318 207 0 0 chr3 63994467 63994525 -163530053 + MER63 DNA MER1_type 689 746 -315 288 273 0 0 chr3 63994530 63994596 -163529982 + MER63 DNA MER1_type 978 1043 -18 2451 209 60 38 chr3 63995273 63995853 -163528725 - MLT1E LTR MaLR 0 593 1 180 111 0 0 chr3 63998277 63998304 -163526274 + (A)n Simple_repeat Simple_repeat 1 27 0 255 289 97 18 chr3 63998703 63998817 -163525761 - L2 LINE L2 -5 3267 3145 1620 155 104 8 chr3 63999112 63999466 -163525112 - L1MB7 LINE L1 -43 6137 5752 2423 159 49 9 chr3 63999471 63999937 -163524641 + L1MB7 LINE L1 5689 6173 -11 198 71 0 0 chr3 64000110 64000138 -163524440 + (TA)n Simple_repeat Simple_repeat 1 28 0 2434 77 0 6 chr3 64000174 64000487 -163524091 - AluY SINE Alu 0 311 1 2098 135 3 0 chr3 64000493 64000789 -163523789 - AluJb SINE Alu -15 297 1 525 296 108 8 chr3 64000790 64001030 -163523548 - MARNA DNA Mariner -201 385 122 264 312 32 0 chr3 64001059 64001152 -163523426 + MIR SINE MIR 92 187 -75 204 246 0 0 chr3 64001189 64001258 -163523320 + GA-rich Low_complexity Low_complexity 1 69 0 240 86 0 0 chr3 64001340 64001375 -163523203 + (A)n Simple_repeat Simple_repeat 1 35 0 540 282 97 19 chr3 64001682 64001888 -163522690 - MIR SINE MIR -27 235 14 849 161 15 7 chr3 64002028 64002165 -163522413 + AluJo SINE Alu 2 139 -173 239 217 29 0 chr3 64002342 64002411 -163522167 + T-rich Low_complexity Low_complexity 3 73 0 819 144 38 30 chr3 64002649 64002781 -163521797 + FLAM_A SINE Alu 1 133 0 410 172 13 166 chr3 64002867 64003024 -163521554 + MIR SINE MIR 105 237 -25 253 79 0 26 chr3 64003026 64003064 -163521514 - MLT1I LTR MaLR -3 406 370 307 329 81 20 chr3 64003125 64003274 -163521304 - MIR3 SINE MIR -21 187 30 452 235 106 8 chr3 64004550 64004682 -163519896 + L1ME3A LINE L1 3 147 -5972 317 292 211 22 chr3 64004947 64005259 -163519319 + L1ME3A LINE L1 646 1016 -5103 674 290 170 36 chr3 64005340 64006181 -163518397 + L1ME3A LINE L1 3307 4260 -1869 1158 258 72 59 chr3 64006200 64006572 -163518006 + L1ME3A LINE L1 5083 5449 -704 387 0 0 0 chr3 64006572 64006615 -163517963 + (CA)n Simple_repeat Simple_repeat 1 43 0 1158 258 72 59 chr3 64006615 64006801 -163517777 + L1ME3A LINE L1 5449 5631 -522 1149 185 31 57 chr3 64006801 64006904 -163517674 + MER58A DNA MER1_type 4 108 -2312 1985 135 7 0 chr3 64006904 64007208 -163517370 - AluSx SINE Alu -6 306 1 1149 185 31 57 chr3 64007208 64007331 -163517247 + MER58A DNA MER1_type 108 224 0 1158 258 72 59 chr3 64007331 64007596 -163516982 + L1ME3A LINE L1 5631 5918 -235 769 220 31 0 chr3 64007800 64007959 -163516619 + MIR SINE MIR 3 166 -96 318 247 32 11 chr3 64008492 64008585 -163515993 + MIR SINE MIR 98 192 -70 330 67 0 0 chr3 64008877 64008922 -163515656 + (CA)n Simple_repeat Simple_repeat 2 46 0 353 296 10 20 chr3 64010515 64010613 -163513965 + MIR SINE MIR 26 122 -86 498 243 13 97 chr3 64010638 64010864 -163513714 + MIR SINE MIR 53 259 -3 590 215 181 7 chr3 64011778 64011927 -163512651 + MER5A DNA MER1_type 9 183 -6 1166 176 26 11 chr3 64012179 64012291 -163512287 - L1MA4 LINE L1 -3 6297 6188 225 0 0 0 chr3 64012291 64012316 -163512262 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 387 60 0 0 chr3 64012315 64012365 -163512213 + (TA)n Simple_repeat Simple_repeat 1 50 0 1166 176 26 11 chr3 64012316 64012366 -163512212 - L1MA4 LINE L1 -112 6188 6140 2349 72 3 3 chr3 64012366 64012658 -163511920 - AluY SINE Alu -19 292 1 1166 176 26 11 chr3 64012658 64012815 -163511763 - L1MA4 LINE L1 -160 6140 6022 351 0 0 0 chr3 64012879 64012918 -163511660 + (TG)n Simple_repeat Simple_repeat 2 40 0 1391 139 10 0 chr3 64013034 64013242 -163511336 - MER2 DNA MER2_type -135 210 1 1913 134 40 22 chr3 64013357 64013678 -163510900 + L1MA4A LINE L1 5971 6297 -6 357 62 0 0 chr3 64014049 64014097 -163510481 + (TA)n Simple_repeat Simple_repeat 2 49 0 201 133 0 0 chr3 64014107 64014137 -163510441 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 1007 124 25 75 chr3 64014236 64014437 -163510141 + L1MB7 LINE L1 5985 6175 -9 245 250 15 15 chr3 64014540 64014608 -163509970 - MLT1K LTR MaLR -5 583 516 242 238 10 69 chr3 64014541 64014642 -163509936 - LTR67 LTR ERVL -6 551 457 * 411 59 0 0 chr3 64015080 64015131 -163509447 - L1PA13 LINE L1 -249 5914 5864 200 328 62 0 chr3 64015163 64015227 -163509351 + MIR SINE MIR 18 85 -177 265 331 108 7 chr3 64015304 64015452 -163509126 + MIR SINE MIR 80 242 -20 267 322 71 44 chr3 64015769 64015952 -163508626 - MIR3 SINE MIR -6 202 15 209 229 164 0 chr3 64017573 64017634 -163506944 + MIR SINE MIR 81 151 -111 201 154 0 0 chr3 64017657 64017696 -163506882 + (CA)n Simple_repeat Simple_repeat 2 40 0 239 204 19 19 chr3 64017758 64017812 -163506766 - Charlie8 DNA MER1_type -989 1428 1375 483 305 96 75 chr3 64018007 64018341 -163506237 - L2 LINE L2 -3 3269 2929 654 259 119 51 chr3 64018686 64018979 -163505599 - L2 LINE L2 -2 3311 2999 405 214 34 0 chr3 64019071 64019160 -163505418 + L2 LINE L2 3220 3311 -2 1790 158 39 4 chr3 64019255 64019534 -163505044 - AluJb SINE Alu -23 289 1 1103 143 0 66 chr3 64019547 64019852 -163504726 + L1MB1 LINE L1 5197 5485 -683 835 184 7 0 chr3 64019893 64020028 -163504550 + FRAM SINE Alu 20 156 -15 4091 156 30 9 chr3 64020028 64020707 -163503871 + L1MB1 LINE L1 5476 6168 0 708 203 0 0 chr3 64020747 64020875 -163503703 + FLAM_A SINE Alu 1 128 -5 708 257 0 7 chr3 64021079 64021227 -163503351 - MER93a LTR ERV1 -34 368 222 457 314 48 14 chr3 64021252 64021462 -163503116 + HAL1 LINE L1 1430 1646 -861 243 292 0 0 chr3 64021497 64021562 -163503016 - MER63 DNA MER1_type -11 1051 987 653 202 32 0 chr3 64021568 64021692 -163502886 - MER63 DNA MER1_type -308 754 1 557 228 46 30 chr3 64021865 64022067 -163502511 - MLT1I LTR MaLR -2 423 243 388 252 19 10 chr3 64022100 64022203 -163502375 - MLT1I LTR MaLR -277 132 29 1324 240 31 9 chr3 64022472 64022793 -163501785 - MER93a LTR ERV1 0 402 75 420 314 69 0 chr3 64023127 64023286 -163501292 + MIR SINE MIR 89 258 -4 735 225 57 35 chr3 64023345 64023572 -163501006 + MLT1H LTR MaLR 7 238 -311 1228 256 167 5 chr3 64023572 64023872 -163500706 + L1MEc LINE L1 39 426 -5970 1714 177 152 18 chr3 64023872 64024273 -163500305 + MSTB2 LTR MaLR 1 455 -2 1228 256 167 5 chr3 64024273 64024386 -163500192 + L1MEc LINE L1 426 519 -5877 616 325 31 19 chr3 64024390 64024707 -163499871 + MLT1H LTR MaLR 227 547 -2 1147 109 24 0 chr3 64025401 64025566 -163499012 - Tigger5 DNA MER2_type 0 2323 2155 267 161 113 0 chr3 64025564 64025626 -163498952 - Tigger5 DNA MER2_type -2249 74 6 * 1076 286 79 44 chr3 64025822 64026220 -163498358 + L2 LINE L2 2818 3237 -76 2403 86 0 7 chr3 64026220 64026521 -163498057 + AluY SINE Alu 1 299 -12 1076 286 79 44 chr3 64026521 64026601 -163497977 + L2 LINE L2 3237 3313 0 767 246 136 9 chr3 64026736 64026964 -163497614 - MIR SINE MIR -3 259 3 1971 150 43 40 chr3 64028172 64028546 -163496032 - THE1C LTR MaLR 0 375 1 1019 157 0 0 chr3 64028584 64028731 -163495847 + AluSg/x SINE Alu 134 280 -32 189 0 0 0 chr3 64028731 64028752 -163495826 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 319 244 24 0 chr3 64029260 64029342 -163495236 + L2 LINE L2 2995 3078 -194 544 283 58 11 chr3 64029689 64029880 -163494698 - MIR SINE MIR -48 214 15 1573 195 104 30 chr3 64030401 64030765 -163493813 + L1MCa LINE L1 323 713 -5713 311 202 0 54 chr3 64030829 64030958 -163493620 + (TA)n Simple_repeat Simple_repeat 2 123 0 212 149 0 64 chr3 64030980 64031074 -163493504 + (CATATA)n Simple_repeat Simple_repeat 2 89 0 1676 155 0 22 chr3 64031108 64031386 -163493192 - AluJb SINE Alu -30 282 11 1213 157 119 0 chr3 64031656 64031866 -163492712 + MER46A DNA MER2_type 1 235 -1 456 277 43 22 chr3 64031871 64032055 -163492523 - MIR SINE MIR -4 258 71 2293 171 53 27 chr3 64032121 64032572 -163492006 + MER31B LTR ERV1 4 466 0 204 213 0 12 chr3 64033190 64033283 -163491295 + (CA)n Simple_repeat Simple_repeat 1 91 0 371 274 94 17 chr3 64033489 64033606 -163490972 - MIR3 SINE MIR -68 140 15 276 143 0 0 chr3 64033712 64033754 -163490824 + L2 LINE L2 3272 3313 0 773 301 107 27 chr3 64034228 64034782 -163489796 + L1ME4a LINE L1 5522 6119 -2 258 317 81 31 chr3 64034856 64035017 -163489561 - L3b LINE CR1 -86 1497 1329 * 261 353 42 0 chr3 64034990 64035109 -163489469 + L2 LINE L2 3141 3264 -8 2089 128 0 0 chr3 64035857 64036166 -163488412 - AluSx SINE Alu 0 309 1 187 294 44 0 chr3 64037103 64037171 -163487407 - L2 LINE L2 -295 2977 2907 486 125 0 50 chr3 64037218 64037298 -163487280 + MIR SINE MIR 47 122 -140 2218 89 0 11 chr3 64037573 64037855 -163486723 + AluSx SINE Alu 1 279 -33 650 284 82 33 chr3 64038399 64038642 -163485936 + MIR SINE MIR 8 262 0 1453 218 64 121 chr3 64038707 64039377 -163485201 + L1ME3A LINE L1 5532 6163 -7 405 298 45 58 chr3 64039765 64040007 -163484571 + MLT1K LTR MaLR 190 428 -160 183 80 0 0 chr3 64040718 64040743 -163483835 + (TCTCCC)n Simple_repeat Simple_repeat 1 25 0 207 284 61 47 chr3 64040873 64041021 -163483557 + MIR3 SINE MIR 23 172 -36 351 141 0 0 chr3 64041563 64041641 -163482937 + (TG)n Simple_repeat Simple_repeat 2 79 0 201 263 253 0 chr3 64043618 64043717 -163480861 - L2 LINE L2 -7 3265 3142 321 26 0 0 chr3 64044218 64044256 -163480322 + (TC)n Simple_repeat Simple_repeat 1 38 0 * 374 94 16 0 chr3 64044255 64044319 -163480259 + (CA)n Simple_repeat Simple_repeat 1 65 0 941 222 17 2 chr3 64044446 64044688 -163479890 + AluJo SINE Alu 1 291 -21 181 343 15 67 chr3 64044707 64044841 -163479737 + L2 LINE L2 3116 3242 -30 224 179 0 0 chr3 64045809 64045848 -163478730 - L2 LINE L2 -6 3266 3228 288 146 0 0 chr3 64046051 64046099 -163478479 - MSTB1 LTR MaLR -29 403 356 464 129 0 0 chr3 64046164 64046226 -163478352 - MER58A DNA MER1_type -9 98 37 417 244 118 0 chr3 64046324 64046443 -163478135 - L2 LINE L2 -2 3311 3179 331 190 0 0 chr3 64047100 64047158 -163477420 - L1ME LINE L1 -478 5643 5586 387 69 0 0 chr3 64047424 64047482 -163477096 + L1 LINE L1 4964 5021 -1125 540 113 0 12 chr3 64047483 64047563 -163477015 - MSTB1 LTR MaLR 0 432 354 434 280 0 20 chr3 64047626 64047726 -163476852 - MER58A DNA MER1_type -9 98 1 1778 185 115 6 chr3 64047758 64048115 -163476463 - MSTD LTR MaLR 0 396 1 2407 213 152 25 chr3 64048320 64049026 -163475552 + LTR50 LTR ERVL 1 795 0 249 182 50 10 chr3 64049535 64049634 -163474944 + (TA)n Simple_repeat Simple_repeat 2 104 0 277 263 85 25 chr3 64049642 64049760 -163474818 - Charlie8 DNA MER1_type -2291 126 2 1011 80 0 0 chr3 64049927 64050065 -163474513 + (GGAA)n Simple_repeat Simple_repeat 3 140 0 572 77 0 0 chr3 64050610 64050688 -163473890 + L1PA15 LINE L1 5963 6040 -125 2088 91 3 28 chr3 64050688 64050975 -163473603 + AluSg SINE Alu 1 280 -30 894 117 36 0 chr3 64051107 64051244 -163473334 + L1PA15 LINE L1 6023 6164 -1 547 296 82 9 chr3 64052000 64052220 -163472358 - MIR SINE MIR -6 256 21 183 204 23 23 chr3 64052349 64052393 -163472185 + L2 LINE L2 262 305 -3009 3849 264 102 26 chr3 64052398 64054060 -163470518 + L2 LINE L2 1246 3313 0 3317 118 31 44 chr3 64054146 64054689 -163469889 - L1MB3 LINE L1 0 6183 5648 265 209 33 0 chr3 64054839 64054930 -163469648 + CT-rich Low_complexity Low_complexity 4 97 0 1354 227 0 12 chr3 64055066 64055308 -163469270 - MER8 DNA MER2_type 0 239 1 406 351 108 5 chr3 64056262 64056447 -163468131 + MIR SINE MIR 12 215 -47 753 232 39 22 chr3 64056452 64056633 -163467945 + MER20 DNA MER1_type 5 188 -31 2330 105 0 0 chr3 64056907 64057202 -163467376 - AluSg SINE Alu -15 295 1 2102 244 76 26 chr3 64057443 64058008 -163466570 - MLT1E LTR MaLR 0 593 1 501 229 46 8 chr3 64058097 64058228 -163466350 + L2 LINE L2 3178 3313 0 753 271 69 14 chr3 64058993 64059211 -163465367 + MIR SINE MIR 11 240 -22 2219 84 0 3 chr3 64059288 64059595 -163464983 + AluY SINE Alu 1 306 0 593 269 28 16 chr3 64059694 64059876 -163464702 + MER58A DNA MER1_type 1 67 -40 897 147 55 12 chr3 64059918 64060081 -163464497 + MER58A DNA MER1_type 55 224 0 265 58 39 39 chr3 64061215 64061267 -163463311 + (GAAA)n Simple_repeat Simple_repeat 1 52 0 555 350 114 29 chr3 64061490 64062244 -163462334 - L2 LINE L2 0 3272 2325 2179 223 102 15 chr3 64062288 64062826 -163461752 - MLT1E LTR MaLR 0 593 9 3702 39 0 0 chr3 64063121 64063535 -163461043 + L1PA5 LINE L1 5732 6145 -9 809 264 70 9 chr3 64063558 64063785 -163460793 - MIR SINE MIR 0 262 22 1356 181 14 0 chr3 64064086 64064301 -163460277 + MER20 DNA MER1_type 1 218 -1 1763 169 33 0 chr3 64065036 64065337 -163459241 - AluJb SINE Alu -1 311 1 516 338 70 14 chr3 64066506 64066719 -163457859 - MIR SINE MIR -14 248 24 557 174 52 35 chr3 64066726 64066841 -163457737 - MER58B DNA MER1_type 0 341 225 333 239 78 49 chr3 64067022 64067164 -163457414 - MIR SINE MIR -80 182 37 932 259 37 4 chr3 64068359 64068602 -163455976 + MIR SINE MIR 12 262 0 363 259 107 46 chr3 64069220 64069319 -163455259 - MIR SINE MIR -74 188 78 2607 157 41 0 chr3 64069319 64069734 -163454844 - MSTB1 LTR MaLR 0 432 1 363 259 107 46 chr3 64069734 64069765 -163454813 - MIR SINE MIR -184 78 50 2014 88 110 0 chr3 64069788 64070060 -163454518 - AluY SINE Alu -9 302 1 282 306 37 127 chr3 64070140 64070352 -163454226 - L2 LINE L2 -93 3179 3004 2107 143 0 6 chr3 64070352 64070666 -163453912 + AluSx SINE Alu 1 312 0 282 306 37 127 chr3 64070666 64070776 -163453802 - L2 LINE L2 -268 3004 2886 224 189 0 0 chr3 64071891 64071928 -163452650 + polypurine Low_complexity Low_complexity 3 39 0 366 318 47 0 chr3 64071964 64072093 -163452485 - MIR3 SINE MIR -8 200 66 561 183 0 28 chr3 64073560 64073702 -163450876 + GA-rich Low_complexity Low_complexity 3 140 0 1120 203 24 61 chr3 64073880 64074210 -163450368 + L1MB4 LINE L1 5863 6180 0 246 248 77 95 chr3 64074181 64074220 -163450358 + L1ME4a LINE L1 5903 5941 -180 * 371 143 104 0 chr3 64074220 64074297 -163450281 + L1MB8 LINE L1 6093 6177 -1 246 248 77 95 chr3 64074297 64074479 -163450099 + L1ME4a LINE L1 5941 6120 -1 481 270 206 0 chr3 64074681 64074870 -163449708 + MIR SINE MIR 8 235 -27 2098 178 18 0 chr3 64074949 64075291 -163449287 + MER7A DNA MER2_type 1 346 0 1421 202 88 0 chr3 64075317 64075614 -163448964 + MER58B DNA MER1_type 1 323 -18 1877 165 57 34 chr3 64075708 64076155 -163448423 + MER89 LTR ERV1 1 557 -2 3487 246 85 66 chr3 64076179 64077596 -163446982 + MER89-int LTR ERV1 28 1472 -5329 243 159 25 0 chr3 64077602 64077648 -163446930 + Alu SINE Alu 38 78 -97 244 111 0 0 chr3 64077667 64077703 -163446875 + Alu SINE Alu 42 77 -98 753 100 0 0 chr3 64077814 64077914 -163446664 + L1PA16 LINE L1 6058 6157 -9 25 0 0 0 chr3 64077920 64077945 -163446633 + AT_rich Low_complexity Low_complexity 1 25 0 8823 214 66 34 chr3 64078285 64079424 -163445154 + MER89-int LTR ERV1 4744 5846 -955 2456 75 0 0 chr3 64079424 64079718 -163444860 - AluSc SINE Alu -15 294 1 8823 214 66 34 chr3 64079718 64080290 -163444288 + MER89-int LTR ERV1 5846 6398 -403 207 0 0 0 chr3 64080290 64080313 -163444265 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8823 214 66 34 chr3 64080313 64080331 -163444247 + MER89-int LTR ERV1 6398 6414 -387 2380 98 3 0 chr3 64080331 64080637 -163443941 - AluSx SINE Alu -5 307 1 8823 214 66 34 chr3 64080637 64080900 -163443678 + MER89-int LTR ERV1 6414 6801 0 340 207 12 0 chr3 64080900 64080982 -163443596 + MER89 LTR ERV1 1 83 -476 * 1257 209 124 30 chr3 64080963 64081293 -163443285 + MER89 LTR ERV1 199 559 0 525 282 32 36 chr3 64082020 64082189 -163442389 - MIR SINE MIR 0 262 93 1865 171 3 3 chr3 64082189 64082499 -163442079 + AluJb SINE Alu 1 310 -2 525 282 32 36 chr3 64082499 64082581 -163441997 - MIR SINE MIR -169 93 12 751 221 0 0 chr3 64083096 64083227 -163441351 + FLAM_A SINE Alu 3 133 0 4701 20 0 0 chr3 64083434 64083942 -163440636 + L1PA2 LINE L1 5648 6155 0 1397 189 30 13 chr3 64084247 64084549 -163440029 - MER33 DNA MER1_type -2 322 16 878 269 37 0 chr3 64084748 64084993 -163439585 - MIR SINE MIR -6 256 3 958 228 47 9 chr3 64085121 64085353 -163439225 - L1M4 LINE L1 -1106 5040 4800 1834 199 0 3 chr3 64085423 64085734 -163438844 - MLT1A1 LTR MaLR 0 365 56 232 367 34 34 chr3 64085908 64086055 -163438523 - L3 LINE CR1 -47 1530 1384 255 290 97 0 chr3 64086768 64086861 -163437717 + MER5B DNA MER1_type 7 108 -70 227 77 0 26 chr3 64086880 64086919 -163437659 + (TTTTTG)n Simple_repeat Simple_repeat 2 39 0 372 100 0 0 chr3 64087332 64087382 -163437196 + MADE1 DNA Mariner 31 80 0 340 271 25 57 chr3 64088404 64088472 -163436106 - L2 LINE L2 -5 3267 3203 2539 171 31 5 chr3 64088472 64088887 -163435691 + MSTB LTR MaLR 1 426 0 340 271 25 57 chr3 64088887 64088940 -163435638 - L2 LINE L2 -69 3203 3150 339 309 111 0 chr3 64090810 64090936 -163433642 + MER117 DNA MER1_type 53 192 -5 272 273 36 45 chr3 64091325 64091435 -163433143 + MIR SINE MIR 110 218 -44 230 257 81 14 chr3 64091749 64091823 -163432755 - MIR SINE MIR -81 181 103 393 256 71 143 chr3 64093241 64093439 -163431139 + L2 LINE L2 2827 3038 -234 2096 138 3 0 chr3 64093439 64093736 -163430842 + AluSx SINE Alu 1 298 -14 393 256 71 143 chr3 64093736 64094018 -163430560 + L2 LINE L2 3038 3272 0 3967 171 113 11 chr3 64094802 64095637 -163428941 + L1MB8 LINE L1 5259 6178 0 2101 141 133 18 chr3 64095739 64096123 -163428455 + MSTA LTR MaLR 1 428 0 866 268 178 9 chr3 64096245 64096666 -163427912 + L1ME LINE L1 5333 5824 -297 595 196 0 0 chr3 64096691 64096793 -163427785 + FLAM_A SINE Alu 37 138 -4 217 0 61 0 chr3 64097002 64097035 -163427543 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 1098 169 0 30 chr3 64097500 64097701 -163426877 + AluJb SINE Alu 117 311 -1 290 259 94 70 chr3 64097764 64097965 -163426613 - L1MC4a LINE L1 -1846 5962 5757 1197 237 89 67 chr3 64097986 64098480 -163426098 - MLT1J LTR MaLR 0 511 7 341 267 56 0 chr3 64098597 64098687 -163425891 - MIR3 SINE MIR -31 177 83 866 174 12 0 chr3 64098705 64098866 -163425712 - MER53 DNA DNA 0 189 27 362 160 0 13 chr3 64098874 64098949 -163425629 + (TA)n Simple_repeat Simple_repeat 1 74 0 1476 206 31 10 chr3 64098950 64099242 -163425336 - AluJo SINE Alu -14 298 1 251 88 0 0 chr3 64099242 64099276 -163425302 - MER53 DNA DNA -153 36 3 199 333 0 33 chr3 64099282 64099342 -163425236 - MIR3 SINE MIR -137 71 14 1576 211 71 40 chr3 64100090 64100640 -163423938 + L1MC5 LINE L1 7300 7866 -95 2709 154 37 18 chr3 64102016 64102153 -163422425 - MER66B LTR ERV1 -23 463 330 2420 116 30 22 chr3 64102153 64102514 -163422064 - THE1B LTR MaLR 0 364 1 2709 154 37 18 chr3 64102514 64102830 -163421748 - MER66B LTR ERV1 -156 330 1 496 295 65 60 chr3 64102830 64103183 -163421395 - L1MC4a LINE L1 -2193 5615 5261 1325 191 19 0 chr3 64103183 64103398 -163421180 - MER20 DNA MER1_type 0 219 1 1138 185 35 0 chr3 64103638 64103838 -163420740 - MER3 DNA MER1_type -1 208 2 630 227 162 0 chr3 64103855 64104009 -163420569 + MER5A DNA MER1_type 9 187 -2 641 255 129 87 chr3 64104023 64104380 -163420198 - L3 LINE CR1 -315 1262 891 24 77 0 0 chr3 64104545 64104597 -163419981 + AT_rich Low_complexity Low_complexity 1 52 0 1656 92 72 0 chr3 64104789 64105038 -163419540 + L1MA2 LINE L1 6034 6300 -4 22 0 0 0 chr3 64105038 64105060 -163419518 + AT_rich Low_complexity Low_complexity 1 22 0 1954 139 59 0 chr3 64105485 64105772 -163418806 + AluSx SINE Alu 1 304 -8 405 109 0 0 chr3 64105921 64105985 -163418593 + (TAGA)n Simple_repeat Simple_repeat 2 65 0 568 183 144 100 chr3 64106043 64106177 -163418401 - L1ME LINE L1 -359 5762 5612 2140 151 0 0 chr3 64106177 64106489 -163418089 - AluSx SINE Alu 0 312 1 568 183 144 100 chr3 64106489 64106583 -163417995 - L1ME LINE L1 -509 5612 5524 1036 162 29 17 chr3 64106780 64106953 -163417625 + MER45A DNA AcHobo 4 178 0 339 329 44 13 chr3 64107686 64107844 -163416734 + MER5A DNA MER1_type 6 168 -21 289 226 236 19 chr3 64107854 64107960 -163416618 - MER5A DNA MER1_type -6 183 55 611 179 36 0 chr3 64107967 64108079 -163416499 + MER5B DNA MER1_type 1 116 -62 299 269 96 0 chr3 64108161 64108265 -163416313 + L2 LINE L2 2937 3050 -222 690 196 114 33 chr3 64108520 64108704 -163415874 - MIR SINE MIR -25 237 39 200 291 88 52 chr3 64108990 64109241 -163415337 - L2 LINE L2 -195 3118 2859 376 159 0 0 chr3 64109498 64109561 -163415017 + L1MA10 LINE L1 6236 6298 -36 23 0 0 0 chr3 64109574 64109597 -163414981 + AT_rich Low_complexity Low_complexity 1 23 0 374 282 119 8 chr3 64110121 64110316 -163414262 - MIR SINE MIR -2 260 45 504 289 58 0 chr3 64110712 64110868 -163413710 - MIR SINE MIR 0 262 98 525 132 0 0 chr3 64110956 64111032 -163413546 - AluJ/FRAM SINE Alu -17 295 220 266 228 0 18 chr3 64111033 64111090 -163413488 - MIR SINE MIR -194 68 13 788 258 67 10 chr3 64111920 64112129 -163412449 - MIR SINE MIR -40 222 2 1933 184 40 51 chr3 64112221 64112691 -163411887 + MLT1C LTR MaLR 1 467 0 285 261 36 54 chr3 64112721 64112832 -163411746 - MIR3 SINE MIR -52 156 48 551 252 126 0 chr3 64112983 64113118 -163411460 + MIR SINE MIR 111 262 0 2160 118 0 16 chr3 64114739 64115053 -163409525 + AluSc SINE Alu 1 309 0 189 74 0 0 chr3 64115072 64115099 -163409479 + (TC)n Simple_repeat Simple_repeat 1 27 0 343 273 192 12 chr3 64115224 64115396 -163409182 - Charlie8 DNA MER1_type -2172 245 76 256 254 15 15 chr3 64115396 64115463 -163409115 - MIR SINE MIR -168 94 28 198 167 0 0 chr3 64115548 64115584 -163408994 + (TGGA)n Simple_repeat Simple_repeat 4 39 0 322 269 130 19 chr3 64116362 64116470 -163408108 - MIR SINE MIR -70 138 19 198 0 0 0 chr3 64116958 64116980 -163407598 + (A)n Simple_repeat Simple_repeat 1 22 0 266 247 104 13 chr3 64117057 64117134 -163407444 + L2 LINE L2 3188 3271 -42 406 262 185 4 chr3 64117882 64118027 -163406551 - MIR SINE MIR -31 177 11 390 211 60 111 chr3 64118217 64118304 -163406274 + MER113 DNA MER1_type? 320 410 -111 1899 136 10 36 chr3 64118304 64118613 -163405965 + AluJo SINE Alu 1 301 -11 390 211 60 111 chr3 64118613 64118724 -163405854 + MER113 DNA MER1_type? 410 508 -13 665 222 38 54 chr3 64118743 64118928 -163405650 + MIR SINE MIR 22 203 -59 1772 175 23 10 chr3 64120476 64120779 -163403799 - AluJb SINE Alu -5 307 1 2318 87 0 37 chr3 64120905 64121227 -163403351 + AluY SINE Alu 1 310 -1 246 256 24 49 chr3 64121739 64121821 -163402757 + MLT1K LTR MaLR 184 263 -325 488 289 173 10 chr3 64123008 64123216 -163401362 + MIR SINE MIR 11 252 -10 1137 192 49 0 chr3 64123618 64123821 -163400757 - MER20 DNA MER1_type -4 215 3 213 39 0 0 chr3 64125857 64125883 -163398695 + (T)n Simple_repeat Simple_repeat 1 26 0 551 264 162 33 chr3 64126109 64126442 -163398136 - MLT1L LTR MaLR -22 593 218 392 219 26 53 chr3 64127023 64127137 -163397441 + MLT1H LTR MaLR 426 536 -13 1718 143 33 33 chr3 64127182 64127483 -163397095 + AluJb SINE Alu 1 301 -11 375 60 0 0 chr3 64127559 64127609 -163396969 + (TTGG)n Simple_repeat Simple_repeat 2 51 0 833 136 16 8 chr3 64127609 64127728 -163396850 - FLAM_C SINE Alu -23 120 1 1453 178 55 93 chr3 64127791 64128157 -163396421 + MLT1B LTR MaLR 1 352 -38 2157 118 0 0 chr3 64128541 64128837 -163395741 + AluSx SINE Alu 1 296 -16 225 94 0 0 chr3 64128844 64128876 -163395702 + (GGGA)n Simple_repeat Simple_repeat 4 35 0 1826 122 0 4 chr3 64130841 64131095 -163393483 + AluJo SINE Alu 34 286 -26 747 292 38 29 chr3 64131231 64131471 -163393107 + MIR SINE MIR 10 251 -11 434 342 19 27 chr3 64131657 64131917 -163392661 + MLT1I LTR MaLR 145 402 -7 776 295 105 0 chr3 64132081 64132366 -163392212 + Charlie7 DNA MER1_type 88 402 -2210 367 239 117 32 chr3 64132364 64132552 -163392026 + Charlie7 DNA MER1_type 2361 2564 -48 * 1217 167 13 34 chr3 64133258 64133497 -163391081 + AluJo SINE Alu 64 297 -15 220 286 0 20 chr3 64133516 64133565 -163391013 - MIR SINE MIR -184 78 31 182 348 84 32 chr3 64133723 64133973 -163390605 - L2 LINE L2 -339 2975 2713 812 238 66 6 chr3 64135959 64136140 -163388438 - MER117 DNA MER1_type -2 195 4 383 362 73 14 chr3 64136534 64136752 -163387826 + MIR SINE MIR 19 249 -13 885 284 52 95 chr3 64136805 64137288 -163387290 + MLT1K LTR MaLR 3 464 -124 584 311 59 49 chr3 64137436 64137741 -163386837 + MLT1H LTR MaLR 124 431 -118 524 259 118 30 chr3 64138187 64138416 -163386162 + L1ME4a LINE L1 5833 6089 -32 3609 116 16 2 chr3 64138416 64138906 -163385672 + LOR1a LTR ERV1 1 497 0 524 259 118 30 chr3 64138906 64138939 -163385639 + L1ME4a LINE L1 6089 6118 -3 353 276 67 72 chr3 64139351 64139530 -163385048 - L1 LINE L1 -2439 3707 3528 1575 183 3 20 chr3 64139530 64139831 -163384747 + AluJo SINE Alu 1 296 -16 353 276 67 72 chr3 64139831 64140132 -163384446 - L1 LINE L1 -2618 3528 3087 362 205 57 33 chr3 64140438 64140560 -163384018 - L1ME4a LINE L1 -2 6119 5995 2477 59 0 16 chr3 64140628 64140935 -163383643 + AluY SINE Alu 1 302 -9 499 195 11 0 chr3 64140940 64141027 -163383551 + FRAM/FAM SINE Alu 1 85 -91 812 228 75 126 chr3 64141267 64141829 -163382749 + MLT1H LTR MaLR 17 549 0 708 129 0 0 chr3 64141972 64142073 -163382505 - AluSx SINE Alu -13 296 196 995 129 0 0 chr3 64142074 64142213 -163382365 - AluSx SINE Alu -174 139 1 27 61 0 15 chr3 64142222 64142259 -163382319 + AT_rich Low_complexity Low_complexity 1 38 -27 713 198 8 0 chr3 64142259 64142380 -163382198 + FLAM_A SINE Alu 1 122 -11 27 61 0 15 chr3 64142380 64142408 -163382170 + AT_rich Low_complexity Low_complexity 38 65 0 1786 163 3 7 chr3 64142587 64142887 -163381691 - AluJb SINE Alu -13 299 1 303 266 42 63 chr3 64142954 64143097 -163381481 + MER103 DNA DNA 18 157 -9 248 387 45 0 chr3 64143150 64143261 -163381317 - L2 LINE L2 0 3272 3157 2254 77 3 32 chr3 64144325 64144637 -163379941 - AluY SINE Alu -8 303 1 1070 244 20 62 chr3 64145306 64145658 -163378920 + MER102b DNA MER1_type 4 340 -1 681 312 73 42 chr3 64145700 64146182 -163378396 + L2 LINE L2 2474 2983 -289 592 261 66 78 chr3 64146827 64146980 -163377598 - LTR16C LTR ERVL 0 491 341 2282 102 0 3 chr3 64146980 64147293 -163377285 - AluSx SINE Alu 0 312 1 592 261 66 78 chr3 64147293 64147396 -163377182 - LTR16C LTR ERVL -150 341 238 40 73 0 0 chr3 64147974 64148056 -163376522 + AT_rich Low_complexity Low_complexity 1 82 0 391 223 32 102 chr3 64148057 64148116 -163376462 - L1ME3A LINE L1 -10 6160 6098 2184 116 0 0 chr3 64148116 64148409 -163376169 - AluSx SINE Alu -19 293 1 391 223 32 102 chr3 64148409 64148506 -163376072 - L1ME3A LINE L1 -72 6098 6015 1587 270 75 41 chr3 64148640 64148973 -163375605 - MER115 DNA AcHobo -11 682 362 1265 198 4 39 chr3 64148973 64149159 -163375419 - MER58A DNA MER1_type -2196 224 46 2511 67 0 0 chr3 64149159 64149458 -163375120 + AluY SINE Alu 1 299 -12 1265 198 4 39 chr3 64149458 64149503 -163375075 - MER58A DNA MER1_type -2374 46 1 1587 270 75 41 chr3 64149503 64149799 -163374779 - MER115 DNA AcHobo -331 362 32 570 301 83 5 chr3 64149963 64150179 -163374399 + MIR SINE MIR 20 252 -10 1851 162 0 16 chr3 64150909 64151212 -163373366 + AluJo SINE Alu 1 298 -14 513 265 39 64 chr3 64153056 64153260 -163371318 + MIR SINE MIR 48 246 -16 774 259 49 11 chr3 64153512 64153828 -163370750 + MLT1I LTR MaLR 46 407 -2 201 272 222 12 chr3 64154571 64154652 -163369926 + MIR SINE MIR 2 99 -163 3039 141 28 10 chr3 64154825 64154974 -163369604 + L1MB3 LINE L1 5677 5822 -361 1654 152 0 33 chr3 64154974 64155250 -163369328 + AluSx SINE Alu 42 308 -4 3039 141 28 10 chr3 64155250 64155597 -163368981 + L1MB3 LINE L1 5822 6182 -1 30 0 0 0 chr3 64155597 64155627 -163368951 + AT_rich Low_complexity Low_complexity 1 30 0 792 294 86 7 chr3 64155640 64155909 -163368669 + LTR16C LTR ERVL 202 491 0 529 255 85 0 chr3 64155913 64156054 -163368524 + MIR SINE MIR 94 246 -16 1220 298 102 13 chr3 64156809 64157330 -163367248 - Tigger8 DNA MER2_type -74 592 26 239 292 53 87 chr3 64157989 64158253 -163366325 + L2 LINE L2 2806 3060 -212 217 311 0 0 chr3 64158687 64158748 -163365830 - MIR SINE MIR -129 79 19 291 28 0 0 chr3 64159893 64159929 -163364649 + (CA)n Simple_repeat Simple_repeat 1 36 0 197 194 242 16 chr3 64160699 64160761 -163363817 + MIR SINE MIR 49 124 -138 277 154 173 0 chr3 64160786 64160838 -163363740 - L2 LINE L2 -54 3259 3199 * 522 207 127 7 chr3 64160821 64160971 -163363607 + MIR SINE MIR 86 253 -9 339 245 157 10 chr3 64161000 64161102 -163363476 + L2 LINE L2 3182 3298 -15 1138 53 0 0 chr3 64161204 64161336 -163363242 + AluY SINE Alu 1 132 -179 21 0 0 0 chr3 64161365 64161386 -163363192 + AT_rich Low_complexity Low_complexity 1 21 0 557 284 48 26 chr3 64161631 64161899 -163362679 - MLT1I LTR MaLR 0 409 136 362 291 121 21 chr3 64162981 64163122 -163361456 + MIR SINE MIR 29 183 -79 467 281 77 66 chr3 64163126 64163310 -163361268 - MLT1J LTR MaLR 0 511 331 2034 146 0 7 chr3 64163310 64163619 -163360959 + AluJb SINE Alu 1 307 -5 467 281 77 66 chr3 64163619 64163938 -163360640 - MLT1J LTR MaLR -180 331 4 244 204 0 19 chr3 64163954 64164008 -163360570 + MIR SINE MIR 200 252 -10 434 335 135 20 chr3 64164985 64165334 -163359244 - Tigger8 DNA MER2_type -271 395 7 2273 104 3 0 chr3 64165482 64165789 -163358789 + AluSx SINE Alu 1 308 -4 31 44 0 0 chr3 64166067 64166112 -163358466 + AT_rich Low_complexity Low_complexity 1 45 0 487 288 110 11 chr3 64166325 64166516 -163358062 + MIR SINE MIR 16 225 -37 180 176 0 0 chr3 64166523 64166557 -163358021 + (TAA)n Simple_repeat Simple_repeat 2 35 0 359 286 0 8 chr3 64168689 64168808 -163355770 + GA-rich Low_complexity Low_complexity 3 120 0 36 100 0 0 chr3 64168831 64168951 -163355627 + GC_rich Low_complexity Low_complexity 1 120 0 2116 119 3 3 chr3 64169890 64170192 -163354386 - AluSx SINE Alu -10 302 1 351 259 74 19 chr3 64170927 64171035 -163353543 + MIR3 SINE MIR 89 202 -6 222 136 0 0 chr3 64171066 64171110 -163353468 + (CA)n Simple_repeat Simple_repeat 2 45 0 410 303 149 61 chr3 64171351 64171579 -163352999 - L2 LINE L2 0 3272 3025 457 289 110 13 chr3 64171917 64172145 -163352433 + L2 LINE L2 2278 2527 -787 803 241 30 5 chr3 64172512 64172711 -163351867 - MIR SINE MIR -27 235 32 396 240 58 137 chr3 64172718 64173047 -163351531 - L2 LINE L2 -787 2527 2225 295 308 49 21 chr3 64174677 64174820 -163349758 + MIR SINE MIR 72 218 -44 640 195 8 0 chr3 64174929 64175047 -163349531 + MER96B DNA MER1_type? 4 122 -295 325 161 179 0 chr3 64175050 64175106 -163349472 + MER58A DNA MER1_type 10 75 -32 294 236 94 114 chr3 64176326 64176461 -163348117 + MLT1K LTR MaLR 187 323 -265 1775 161 34 7 chr3 64176461 64176753 -163347825 + AluJo SINE Alu 1 300 -12 294 236 94 114 chr3 64176753 64176914 -163347664 + MLT1K LTR MaLR 323 477 -111 240 173 93 53 chr3 64176991 64177066 -163347512 + MLT1K LTR MaLR 511 588 0 339 220 51 51 chr3 64177067 64177185 -163347393 - L1MC4a LINE L1 -1909 5899 5782 447 323 44 39 chr3 64177704 64177933 -163346645 + MIR SINE MIR 28 257 -5 243 309 71 8 chr3 64178591 64178717 -163345861 + L2 LINE L2 2943 3076 -196 452 304 30 30 chr3 64179385 64179553 -163345025 - L3 LINE CR1 -102 1475 1308 385 230 166 22 chr3 64179611 64179750 -163344828 + MIR SINE MIR 74 232 -30 200 233 0 0 chr3 64179775 64179818 -163344760 - L3 LINE CR1 -288 1289 1247 6388 29 1 18 chr3 64179839 64180576 -163344002 - L1PA4 LINE L1 0 6155 5431 5177 35 3 3 chr3 64180576 64181230 -163343348 + L1P LINE L1 4775 5428 -727 740 143 0 0 chr3 64181379 64181484 -163343094 + FLAM_A SINE Alu 28 132 -10 278 273 79 29 chr3 64181681 64181820 -163342758 - L1ME4a LINE L1 -6 6115 5970 529 241 78 18 chr3 64181847 64182013 -163342565 - MLT1J LTR MaLR -331 180 5 436 278 35 6 chr3 64182023 64182192 -163342386 - L1MC4a LINE L1 -366 5755 5582 2072 166 0 6 chr3 64182345 64182659 -163341919 + AluJb SINE Alu 1 312 0 228 345 60 0 chr3 64182769 64182853 -163341725 - L2 LINE L2 -16 3256 3168 492 312 47 18 chr3 64182859 64183029 -163341549 - L3 LINE CR1 -1056 521 347 228 303 22 0 chr3 64183247 64183336 -163341242 + (TG)n Simple_repeat Simple_repeat 2 92 0 414 53 0 0 chr3 64183931 64183988 -163340590 + (GAAA)n Simple_repeat Simple_repeat 1 57 0 322 105 18 0 chr3 64183983 64184040 -163340538 + (GGGAA)n Simple_repeat Simple_repeat 3 60 0 * 1023 118 6 11 chr3 64184208 64184386 -163340192 + (GAGAA)n Simple_repeat Simple_repeat 4 180 0 335 207 122 10 chr3 64184389 64184503 -163340075 - MIR SINE MIR -77 131 4 407 223 36 36 chr3 64185331 64185443 -163339135 - MIR SINE MIR -40 222 111 356 285 61 30 chr3 64185691 64185856 -163338722 - MIR SINE MIR -6 256 87 507 240 47 7 chr3 64186121 64186271 -163338307 + MIR SINE MIR 106 261 -1 241 337 50 10 chr3 64186994 64187095 -163337483 + MIR SINE MIR 51 155 -107 1000 180 6 17 chr3 64187144 64187322 -163337256 + AluJo SINE Alu 14 189 -123 1021 236 84 76 chr3 64187515 64187896 -163336682 + LTR16A LTR ERVL 57 440 -10 237 349 47 16 chr3 64187896 64188025 -163336553 - L2 LINE L2 -662 2652 2520 1120 164 128 18 chr3 64188068 64188294 -163336284 - MER96B DNA MER1_type? -166 251 1 519 143 0 76 chr3 64188335 64188440 -163336138 - FLAM_A SINE Alu -5 137 41 485 297 32 0 chr3 64188506 64188661 -163335917 + MIR SINE MIR 75 234 -28 408 236 35 111 chr3 64188931 64189130 -163335448 - MIR SINE MIR -2 260 77 313 263 35 53 chr3 64190263 64190377 -163334201 - L3 LINE CR1 -7 1570 1459 1426 139 69 154 chr3 64190450 64190804 -163333774 + MLT1B LTR MaLR 4 318 -72 1919 137 18 0 chr3 64190804 64191082 -163333496 - AluSx SINE Alu -27 285 3 1426 139 69 154 chr3 64191082 64191150 -163333428 + MLT1B LTR MaLR 318 390 0 256 210 145 94 chr3 64191472 64191610 -163332968 + MIR SINE MIR 118 262 0 2221 148 36 25 chr3 64192317 64192676 -163331902 + THE1B LTR MaLR 1 363 -1 2089 124 0 13 chr3 64192954 64193252 -163331326 - AluSp SINE Alu -19 294 1 479 283 108 40 chr3 64193590 64193909 -163330669 - L1ME4a LINE L1 -168 5953 5600 1914 167 7 0 chr3 64193909 64194208 -163330370 + AluJb SINE Alu 1 301 -11 479 283 108 40 chr3 64194208 64194287 -163330291 - L1ME4a LINE L1 -521 5600 5528 1836 169 0 25 chr3 64194517 64194837 -163329741 + AluJo SINE Alu 1 312 0 15470 122 25 31 chr3 64195321 64195484 -163329094 - Tigger1 DNA MER2_type 0 2418 2256 1619 191 0 31 chr3 64195484 64195778 -163328800 + AluJo SINE Alu 6 290 -22 15470 122 25 31 chr3 64195778 64196660 -163327918 - Tigger1 DNA MER2_type -162 2256 1370 3301 158 22 39 chr3 64196660 64197247 -163327331 + LTR22 LTR ERVK 1 577 -3 15470 122 25 31 chr3 64197247 64198632 -163325946 - Tigger1 DNA MER2_type -1048 1370 2 2522 62 0 3 chr3 64198678 64198983 -163325595 + AluY SINE Alu 1 304 -7 509 277 19 7 chr3 64199268 64199423 -163325155 + MIR SINE MIR 58 214 -48 1037 177 54 10 chr3 64199436 64199639 -163324939 - AluJo SINE Alu -18 294 83 27 29 0 0 chr3 64199639 64199673 -163324905 + AT_rich Low_complexity Low_complexity 1 34 0 1406 181 72 57 chr3 64199695 64200044 -163324534 + MLT1A1 LTR MaLR 1 354 -11 500 276 25 25 chr3 64200099 64200262 -163324316 - L1MC/D LINE L1 -2014 5794 5632 227 265 81 44 chr3 64200394 64200530 -163324048 - L2 LINE L2 -177 3136 2996 2204 131 0 0 chr3 64200570 64200883 -163323695 + AluSq SINE Alu 1 313 0 1167 138 0 0 chr3 64200883 64201050 -163323528 + AluSg/x SINE Alu 133 299 -13 733 287 121 60 chr3 64201635 64202192 -163322386 - MLT1L LTR MaLR 0 615 20 2204 172 57 0 chr3 64202192 64202558 -163322020 - MLT1B LTR MaLR -3 387 1 733 287 121 60 chr3 64202558 64202579 -163321999 - MLT1L LTR MaLR -595 20 2 757 265 146 30 chr3 64202584 64202762 -163321816 - L1ME4a LINE L1 -43 6078 5922 2073 109 34 14 chr3 64202762 64203056 -163321522 - AluSg SINE Alu -9 301 2 757 265 146 30 chr3 64203056 64203281 -163321297 - L1ME4a LINE L1 -199 5922 5628 2049 143 29 72 chr3 64203679 64204056 -163320522 - MLT1A1 LTR MaLR 0 365 5 225 170 21 0 chr3 64204422 64204469 -163320109 + L2 LINE L2 3194 3241 -72 445 335 68 48 chr3 64204523 64204680 -163319898 - MIR SINE MIR -4 258 93 2520 74 0 0 chr3 64204680 64204989 -163319589 + AluY SINE Alu 1 309 -2 445 335 68 48 chr3 64204989 64205079 -163319499 - MIR SINE MIR -169 93 6 989 186 48 112 chr3 64205307 64205571 -163319007 + L1M4 LINE L1 2432 2675 -3471 1608 174 9 38 chr3 64205571 64205691 -163318887 - AluJo SINE Alu -4 308 186 1852 154 10 16 chr3 64205691 64206003 -163318575 - AluSx SINE Alu 0 312 3 1608 174 9 38 chr3 64206003 64206199 -163318379 - AluJo SINE Alu -126 186 1 989 186 48 112 chr3 64206199 64206246 -163318332 + L1M4 LINE L1 2675 2723 -3423 1839 202 57 31 chr3 64206346 64206389 -163318189 + L1M4 LINE L1 2643 2683 -3463 1516 187 9 38 chr3 64206389 64206508 -163318070 - AluJo SINE Alu -5 307 186 2082 125 10 13 chr3 64206508 64206819 -163317759 - AluSx SINE Alu 0 312 3 1516 187 9 38 chr3 64206819 64207015 -163317563 - AluJo SINE Alu -126 186 1 1839 202 57 31 chr3 64207015 64207392 -163317186 + L1M4 LINE L1 2683 3074 -3072 456 298 52 77 chr3 64207523 64207734 -163316844 + L1M4 LINE L1 3871 4086 -2060 1475 197 115 0 chr3 64207734 64208003 -163316575 + AluSg SINE Alu 1 300 0 456 298 52 77 chr3 64208003 64208428 -163316150 + L1M4 LINE L1 4086 4491 -1655 1570 153 10 52 chr3 64208429 64208736 -163315842 - AluJo SINE Alu -18 294 1 225 179 85 57 chr3 64208868 64208974 -163315604 + (CATATA)n Simple_repeat Simple_repeat 2 110 0 330 175 52 13 chr3 64208976 64209130 -163315448 + (TATAG)n Simple_repeat Simple_repeat 4 163 0 381 113 32 65 chr3 64209175 64209361 -163315217 + (TA)n Simple_repeat Simple_repeat 1 180 0 1899 153 60 17 chr3 64209563 64209915 -163314663 + THE1C LTR MaLR 1 367 -8 279 266 31 0 chr3 64210006 64210070 -163314508 + polypurine Low_complexity Low_complexity 4 69 0 2194 75 14 4 chr3 64210275 64210577 -163314001 - AluY SINE Alu 0 305 1 2019 128 13 3 chr3 64210577 64210875 -163313703 - LTR49 LTR ERV1 -294 301 1 340 195 0 98 chr3 64210881 64210963 -163313615 + MER2 DNA MER2_type 2 75 -270 743 138 17 35 chr3 64211656 64211772 -163312806 + FLAM_C SINE Alu 12 125 -18 2636 125 78 10 chr3 64211821 64212220 -163312358 - MSTB LTR MaLR 0 426 1 2129 131 0 3 chr3 64212417 64212723 -163311855 - AluSq SINE Alu -8 305 1 402 271 123 0 chr3 64213057 64213179 -163311399 - L1MC/D LINE L1 -2084 5724 5588 293 307 106 26 chr3 64213351 64213540 -163311038 + L1MC4a LINE L1 5705 5908 -1900 273 261 88 3 chr3 64213810 64213974 -163310604 - L1MC/D LINE L1 -727 5439 5276 485 213 9 9 chr3 64214007 64214115 -163310463 - L1MB7 LINE L1 -11 6173 6066 1281 138 0 29 chr3 64214449 64214659 -163309919 + AluJb SINE Alu 75 278 -34 921 112 6 12 chr3 64214659 64214820 -163309758 + (GAAA)n Simple_repeat Simple_repeat 1 160 0 602 183 11 22 chr3 64214840 64215020 -163309558 + GA-rich Low_complexity Low_complexity 3 180 0 2153 84 22 0 chr3 64215275 64215548 -163309030 - AluSx SINE Alu -33 279 1 307 51 0 0 chr3 64215550 64215589 -163308989 - L1P5 LINE L1 -545 5606 5568 1338 175 57 4 chr3 64215590 64215836 -163308742 + MSTA LTR MaLR 168 426 -2 237 304 105 12 chr3 64215889 64216060 -163308518 - L1MC/D LINE L1 -1842 4304 4118 1419 177 53 35 chr3 64216089 64216372 -163308206 - AluJo SINE Alu -24 288 1 21 36 0 0 chr3 64216373 64216401 -163308177 + AT_rich Low_complexity Low_complexity 1 28 0 2329 94 0 13 chr3 64216581 64216890 -163307688 - AluSc SINE Alu -4 305 1 260 0 57 0 chr3 64217981 64218016 -163306562 + (TCTCCC)n Simple_repeat Simple_repeat 4 40 0 1660 124 0 0 chr3 64218118 64218352 -163306226 + AluSg/x SINE Alu 68 301 -9 608 304 93 15 chr3 64218368 64218638 -163305940 + L1ME1 LINE L1 5405 5653 -521 2324 60 0 3 chr3 64218638 64218957 -163305621 + AluY SINE Alu 2 319 0 608 304 93 15 chr3 64218957 64218992 -163305586 + L1ME1 LINE L1 5653 5684 -490 2324 77 6 10 chr3 64218992 64219303 -163305275 + AluSg SINE Alu 1 310 0 608 304 93 15 chr3 64219303 64219487 -163305091 + L1ME1 LINE L1 5684 5949 -225 2150 152 65 11 chr3 64219505 64219874 -163304704 - MLT1B LTR MaLR 0 390 2 193 156 0 0 chr3 64220603 64220635 -163303943 - L2 LINE L2 -19 3253 3222 260 207 17 0 chr3 64220712 64220770 -163303808 + L1ME1 LINE L1 5946 6004 -162 2277 123 3 0 chr3 64221142 64221451 -163303127 - AluSx SINE Alu -2 310 1 286 292 283 0 chr3 64221828 64221948 -163302630 + L2 LINE L2 2911 3064 -208 673 193 70 99 chr3 64222072 64222186 -163302392 + AluJo SINE Alu 3 112 -200 1819 176 0 0 chr3 64222186 64222476 -163302102 - AluJo SINE Alu -22 290 1 673 193 70 99 chr3 64222476 64222532 -163302046 + AluJo SINE Alu 112 168 -144 579 15 0 0 chr3 64222665 64222733 -163301845 + (TG)n Simple_repeat Simple_repeat 2 69 0 215 220 20 0 chr3 64223547 64223597 -163300981 + L2 LINE L2 3262 3312 -1 540 241 97 36 chr3 64225627 64225822 -163298756 + MER3 DNA MER1_type 2 208 -1 779 198 141 21 chr3 64226053 64226245 -163298333 - AluSg/x SINE Alu -13 297 83 2109 113 38 0 chr3 64226271 64226562 -163298016 + AluSx SINE Alu 1 302 -10 1062 141 5 32 chr3 64227853 64228038 -163296540 - AluJb SINE Alu -1 311 132 2174 98 3 46 chr3 64228182 64228509 -163296069 + AluSq SINE Alu 1 313 0 266 208 0 38 chr3 64228510 64228563 -163296015 - L2 LINE L2 -2743 571 521 2353 83 0 52 chr3 64230367 64230694 -163293884 - AluY SINE Alu -1 310 1 25 0 0 0 chr3 64230694 64230719 -163293859 + AT_rich Low_complexity Low_complexity 1 25 0 282 148 0 0 chr3 64230719 64230773 -163293805 - AluJb SINE Alu -1 300 247 2312 47 0 0 chr3 64230793 64231069 -163293509 - AluY SINE Alu -35 276 1 222 232 47 163 chr3 64231168 64231211 -163293367 + MIR SINE MIR 84 130 -132 297 0 0 0 chr3 64231211 64231244 -163293334 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 222 232 47 163 chr3 64231244 64231260 -163293318 + MIR SINE MIR 130 146 -116 1543 175 0 26 chr3 64231260 64231528 -163293050 - AluJb SINE Alu -51 261 1 222 232 47 163 chr3 64231528 64231657 -163292921 + MIR SINE MIR 146 251 -11 2131 97 4 0 chr3 64232213 64232491 -163292087 + AluSc SINE Alu 1 279 -30 1998 127 7 3 chr3 64232669 64232960 -163291618 + AluSc SINE Alu 1 292 -17 234 356 11 11 chr3 64232967 64233054 -163291524 - MIR SINE MIR -158 104 18 2023 125 17 3 chr3 64233588 64233877 -163290701 - AluSq SINE Alu -20 293 1 1525 177 17 47 chr3 64233921 64234220 -163290358 - AluJo SINE Alu -22 290 1 23 33 0 0 chr3 64235439 64235469 -163289109 + AT_rich Low_complexity Low_complexity 1 30 0 2245 138 16 5 chr3 64235478 64235849 -163288729 - MER72 LTR ERV1 0 722 348 1191 135 65 22 chr3 64235858 64236088 -163288490 - MER72 LTR ERV1 -482 240 1 28 61 0 0 chr3 64236096 64236145 -163288433 + AT_rich Low_complexity Low_complexity 1 49 0 1312 108 0 0 chr3 64236282 64236449 -163288129 + AluSc SINE Alu 2 168 -141 437 62 0 0 chr3 64236561 64236626 -163287952 + L1PB1 LINE L1 6085 6149 -2 459 58 0 14 chr3 64236634 64236703 -163287875 + MADE1 DNA Mariner 13 80 0 936 129 77 6 chr3 64236704 64236874 -163287704 - MSTA LTR MaLR -244 184 3 1018 253 176 14 chr3 64236874 64237527 -163287051 + L1M4 LINE L1 2800 3558 -2588 237 200 13 53 chr3 64237645 64237720 -163286858 + L1M4 LINE L1 3776 3847 -2299 322 227 104 37 chr3 64237900 64238063 -163286515 + L1M4 LINE L1 5216 5389 -757 1634 140 37 11 chr3 64238674 64238945 -163285633 + AluJb SINE Alu 34 311 -1 983 154 44 6 chr3 64239565 64239747 -163284831 + MER30 DNA MER1_type 9 197 -33 1708 179 7 21 chr3 64240540 64240831 -163283747 - AluSx SINE Alu -25 287 1 372 41 0 0 chr3 64242573 64242622 -163281956 + AluY SINE Alu 1 49 -252 8215 164 12 45 chr3 64242727 64242988 -163281590 + L1MA3 LINE L1 3293 3561 -2744 2144 118 7 3 chr3 64242988 64243285 -163281293 - AluSx SINE Alu -14 298 1 8215 164 12 45 chr3 64243285 64244687 -163279891 + L1MA3 LINE L1 3561 5008 -1297 707 196 21 7 chr3 64244687 64244830 -163279748 + MER20 DNA MER1_type 1 145 -74 8215 164 12 45 chr3 64244830 64245219 -163279359 + L1MA3 LINE L1 5008 5408 -897 1799 172 3 3 chr3 64245219 64245510 -163279068 + AluJb SINE Alu 1 291 -21 2091 130 3 10 chr3 64245512 64245812 -163278766 + AluSg SINE Alu 1 298 -12 2144 70 3 11 chr3 64245822 64246136 -163278442 + AluY SINE Alu 1 312 0 8215 164 12 45 chr3 64246136 64246147 -163278431 + L1MA3 LINE L1 5418 5428 -877 2509 62 0 0 chr3 64246147 64246452 -163278126 + AluY SINE Alu 1 305 -6 8215 164 12 45 chr3 64246452 64247439 -163277139 + L1MA3 LINE L1 5428 6305 0 856 184 33 0 chr3 64247673 64247825 -163276753 + FRAM SINE Alu 1 157 -9 386 322 38 11 chr3 64247907 64248090 -163276488 - MIR SINE MIR -73 189 2 1097 148 74 5 chr3 64248474 64248676 -163275902 + MER20 DNA MER1_type 1 216 -3 1980 119 51 0 chr3 64248913 64249206 -163275372 - AluSp SINE Alu -5 308 1 266 236 29 3 chr3 64249366 64249470 -163275108 + L1MC4 LINE L1 7811 8002 -40 398 20 20 0 chr3 64249714 64249765 -163274813 + (TG)n Simple_repeat Simple_repeat 2 53 0 480 92 32 65 chr3 64249765 64249950 -163274628 + (TA)n Simple_repeat Simple_repeat 2 180 0 223 145 43 29 chr3 64249963 64250032 -163274546 + (TA)n Simple_repeat Simple_repeat 2 71 0 247 207 24 61 chr3 64250265 64250347 -163274231 + MIR SINE MIR 178 256 -6 518 195 186 0 chr3 64250357 64250470 -163274108 - FAM SINE Alu -22 163 30 3082 216 63 46 chr3 64250470 64251947 -163272631 - L1ME1 LINE L1 -284 5882 4396 266 117 17 0 chr3 64251974 64252034 -163272544 - L1ME1 LINE L1 -1712 4434 4374 37924 72 10 6 chr3 64252065 64258194 -163266384 - L1PA5 LINE L1 0 6154 1 336 165 110 11 chr3 64258243 64258334 -163266244 - L1 LINE L1 -1803 4343 4244 405 0 0 0 chr3 64258508 64258553 -163266025 + (TTA)n Simple_repeat Simple_repeat 1 45 0 1462 180 44 15 chr3 64258553 64258825 -163265753 - AluJb SINE Alu -32 280 1 6044 77 10 72 chr3 64258957 64259974 -163264604 - SVA Other Other 0 1386 433 5727 68 29 16 chr3 64259974 64260785 -163263793 - SVA Other Other -551 835 11 195 167 0 0 chr3 64260898 64260940 -163263638 + (TG)n Simple_repeat Simple_repeat 2 43 0 188 269 64 26 chr3 64261971 64262049 -163262529 - MIR SINE MIR -108 154 74 327 289 48 0 chr3 64262474 64262578 -163262000 - MER117 DNA MER1_type -84 113 5 216 0 0 0 chr3 64262810 64262834 -163261744 + (A)n Simple_repeat Simple_repeat 1 24 0 2379 88 0 0 chr3 64262959 64263255 -163261323 + AluSg SINE Alu 1 296 -14 6367 41 33 44 chr3 64263265 64264168 -163260410 + L1PA8 LINE L1 5266 6158 -14 376 323 0 8 chr3 64264245 64264369 -163260209 - L2 LINE L2 0 3272 3150 353 333 153 0 chr3 64264954 64265065 -163259513 + L2 LINE L2 3145 3272 0 1536 176 48 28 chr3 64265566 64265923 -163258655 + MLT1A1 LTR MaLR 1 364 -1 2120 140 76 15 chr3 64267615 64268008 -163256570 + MSTA LTR MaLR 12 428 0 7020 167 53 26 chr3 64268008 64269509 -163255069 + MSTA-int LTR MaLR 1 1580 0 1963 166 100 10 chr3 64269511 64269902 -163254676 + MSTA LTR MaLR 3 428 0 464 338 125 23 chr3 64269905 64270148 -163254430 - L2 LINE L2 -985 2329 2112 878 211 85 0 chr3 64270148 64270347 -163254231 - MER20 DNA MER1_type -3 216 1 464 338 125 23 chr3 64270347 64270544 -163254034 - L2 LINE L2 -1202 2112 1844 300 301 0 65 chr3 64270536 64270659 -163253919 + L3 LINE CR1 1461 1575 -2 * 1818 160 41 22 chr3 64271023 64271391 -163253187 - THE1C LTR MaLR 0 375 1 1697 166 64 7 chr3 64271663 64271958 -163252620 + AluJb SINE Alu 1 312 0 302 325 120 8 chr3 64271963 64272080 -163252498 + MIR3 SINE MIR 38 167 -41 758 193 0 0 chr3 64272633 64272783 -163251795 + L1MB5 LINE L1 6017 6166 -8 1506 149 12 40 chr3 64273246 64273589 -163250989 - MLT1B LTR MaLR 0 390 1 398 319 27 10 chr3 64274864 64275232 -163249346 + L1M4 LINE L1 3559 3939 -2207 503 53 27 40 chr3 64275512 64275587 -163248991 + Alu SINE Alu 227 300 -12 3024 176 49 19 chr3 64275711 64276388 -163248190 - L1MB4 LINE L1 0 6180 5484 1587 179 11 14 chr3 64276389 64276674 -163247904 - AluJo SINE Alu 0 312 29 524 296 153 0 chr3 64276702 64276905 -163247673 - MIR SINE MIR -21 241 8 478 224 9 19 chr3 64277168 64277275 -163247303 - L2 LINE L2 0 3313 3208 281 295 87 39 chr3 64277326 64277533 -163247045 + L2 LINE L2 1925 2141 -1173 3031 245 74 13 chr3 64277811 64277915 -163246663 - L1MEc LINE L1 -5307 1089 993 1988 143 7 0 chr3 64277915 64278201 -163246377 - AluSx SINE Alu -21 291 4 3031 245 74 13 chr3 64278201 64279091 -163245487 - L1MEc LINE L1 -5403 993 34 9679 17 2 2 chr3 64279183 64280394 -163244184 - L1P LINE L1 -2926 3220 2010 7609 28 1 0 chr3 64280402 64281300 -163243278 + L1PA3 LINE L1 5254 6152 -3 2438 92 0 0 chr3 64281523 64281828 -163242750 - AluSg SINE Alu -5 305 1 451 290 44 27 chr3 64281842 64282025 -163242553 + MIR SINE MIR 63 248 -14 1745 194 0 0 chr3 64282152 64282456 -163242122 + AluJb SINE Alu 1 304 0 583 305 21 16 chr3 64283127 64283314 -163241264 - MIR SINE MIR -72 190 3 21 0 0 0 chr3 64283424 64283445 -163241133 + AT_rich Low_complexity Low_complexity 1 21 0 2250 123 3 0 chr3 64283519 64283828 -163240750 + AluSx SINE Alu 1 310 -2 2192 107 21 0 chr3 64285600 64285889 -163238689 + AluSq SINE Alu 3 297 -16 856 168 13 0 chr3 64286253 64286402 -163238176 - Tigger3(Golem) DNA MER2_type 0 3029 2879 375 150 0 0 chr3 64286403 64286463 -163238115 - Tigger3(Golem) DNA MER2_type -2969 60 1 2385 179 23 48 chr3 64286467 64286985 -163237593 - MLT1D LTR MaLR 0 505 1 372 291 134 51 chr3 64287408 64287700 -163236878 - L2 LINE L2 -9 3263 2948 435 250 19 9 chr3 64287704 64287812 -163236766 + L2 LINE L2 3203 3311 -2 2477 43 0 20 chr3 64287915 64288220 -163236358 + AluY SINE Alu 1 299 -12 1044 221 48 0 chr3 64288313 64288562 -163236016 - L1MC1 LINE L1 -2 6331 6071 2078 122 14 43 chr3 64288563 64288933 -163235645 - THE1C LTR MaLR -2 373 15 4539 185 19 47 chr3 64288939 64289438 -163235140 - L1MC1 LINE L1 -257 6076 5564 1915 174 0 3 chr3 64289438 64289749 -163234829 + AluJo SINE Alu 2 311 -1 4539 185 19 47 chr3 64289749 64290978 -163233600 - L1MC1 LINE L1 -769 5564 4418 2290 71 0 0 chr3 64290978 64291281 -163233297 - AluY SINE Alu 0 305 3 4539 185 19 47 chr3 64291281 64291682 -163232896 - L1MC1 LINE L1 -1915 4418 4007 811 161 0 0 chr3 64291685 64291803 -163232775 - FLAM_C SINE Alu -25 118 1 29408 106 14 70 chr3 64291985 64293926 -163230652 - L1P LINE L1 -908 5238 3188 2447 77 0 3 chr3 64293926 64294226 -163230352 - AluY SINE Alu -12 299 1 29408 106 14 70 chr3 64294226 64297827 -163226751 - L1P LINE L1 -2958 3188 12 12383 192 62 12 chr3 64297841 64303185 -163221393 - L1PBa LINE L1 -1101 5761 6 6011 200 184 4 chr3 64303195 64304631 -163219947 - L1M2 LINE L1 -5154 1695 1 1418 184 107 4 chr3 64304873 64305144 -163219434 - AluJo SINE Alu -13 299 1 519 250 37 0 chr3 64306048 64306156 -163218422 + L2 LINE L2 3192 3303 -10 488 181 0 0 chr3 64306424 64306507 -163218071 - AluJ/FRAM SINE Alu -14 298 216 702 180 41 0 chr3 64306508 64306630 -163217948 - AluJo/FLAM SINE Alu -185 127 1 2489 181 144 21 chr3 64307280 64307988 -163216590 - L1MB7 LINE L1 -8 6176 5382 313 185 152 0 chr3 64307996 64308088 -163216490 + L1MB2 LINE L1 5948 6053 -118 23 68 0 0 chr3 64308139 64308183 -163216395 + AT_rich Low_complexity Low_complexity 1 44 0 597 222 106 37 chr3 64308804 64308993 -163215585 + MER58A DNA MER1_type 2 203 -21 1887 83 98 4 chr3 64310028 64310294 -163214284 + AluSx SINE Alu 1 291 -21 2183 93 16 50 chr3 64311962 64312284 -163212294 + AluY SINE Alu 1 311 0 23 54 0 0 chr3 64313946 64313983 -163210595 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr3 64314970 64314991 -163209587 + AT_rich Low_complexity Low_complexity 1 21 0 2007 147 3 0 chr3 64316457 64316750 -163207828 + AluSq SINE Alu 1 294 -19 260 77 0 0 chr3 64316778 64316817 -163207761 - AluSc SINE Alu -4 297 259 1529 102 0 0 chr3 64316817 64317013 -163207565 - AluSc SINE Alu -113 196 1 2337 68 14 3 chr3 64317347 64317641 -163206937 + AluY SINE Alu 1 297 -14 290 281 0 0 chr3 64317784 64317848 -163206730 - L2 LINE L2 -2 3270 3207 10279 153 44 56 chr3 64318060 64318854 -163205724 - L1MA4A LINE L1 -11 6292 5490 1656 186 3 16 chr3 64318854 64319160 -163205418 - AluJo SINE Alu -9 303 2 10279 153 44 56 chr3 64319160 64319701 -163204877 - L1MA4A LINE L1 -813 5490 4944 1876 145 20 17 chr3 64319701 64319997 -163204581 - AluSx SINE Alu -10 302 6 10279 153 44 56 chr3 64319997 64320707 -163203871 - L1MA4A LINE L1 -1359 4944 4227 2153 105 3 20 chr3 64320707 64321013 -163203565 - AluSx SINE Alu -6 306 6 10279 153 44 56 chr3 64321013 64321077 -163203501 - L1MA4A LINE L1 -2076 4227 4164 244 0 0 53 chr3 64321077 64321115 -163203463 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 911 179 0 0 chr3 64321122 64321267 -163203311 - AluSg/x SINE Alu -43 267 123 249 42 42 21 chr3 64321275 64321323 -163203255 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 10279 153 44 56 chr3 64321323 64322840 -163201738 - L1MA4A LINE L1 -2152 4151 2607 * 29507 87 11 10 chr3 64322809 64323083 -163201495 - L1PA7 LINE L1 -194 5960 5688 2194 115 0 0 chr3 64323083 64323379 -163201199 - AluSc SINE Alu -13 296 1 29507 87 11 10 chr3 64323379 64325767 -163198811 - L1PA7 LINE L1 -466 5688 3289 2447 77 0 3 chr3 64325767 64326066 -163198512 - AluY SINE Alu -13 298 1 29507 87 11 10 chr3 64326066 64328215 -163196363 - L1PA7 LINE L1 -2865 3289 1144 2410 94 3 0 chr3 64328440 64328749 -163195829 - AluSx SINE Alu -2 310 1 595 167 158 25 chr3 64328749 64328860 -163195718 - FLAM_C SINE Alu -181 131 2 971 259 48 21 chr3 64328862 64329179 -163195399 - L1MEc LINE L1 -3553 2662 2355 261 0 0 0 chr3 64329179 64329208 -163195370 + (TG)n Simple_repeat Simple_repeat 2 30 0 2241 107 0 3 chr3 64329212 64329503 -163195075 - AluSx SINE Alu -20 292 3 971 259 48 21 chr3 64329503 64329555 -163195023 - L1MEc LINE L1 -3862 2353 2278 1278 236 3 0 chr3 64329556 64329840 -163194738 - AluSc SINE Alu -3 306 22 2440 76 0 10 chr3 64330327 64330641 -163193937 - AluSq SINE Alu 0 313 3 716 207 22 73 chr3 64330648 64330694 -163193884 - L1MEc LINE L1 -4033 2363 2316 2287 109 3 0 chr3 64330694 64330998 -163193580 - AluSc SINE Alu -4 305 1 716 207 22 73 chr3 64330998 64331183 -163193395 - L1MEc LINE L1 -4080 2316 2144 2130 91 49 0 chr3 64331185 64331471 -163193107 - AluSx SINE Alu -12 300 1 1298 125 5 0 chr3 64333188 64333372 -163191206 + AluSg/x SINE Alu 121 305 -5 1634 197 13 13 chr3 64333376 64333685 -163190893 + AluJo SINE Alu 1 309 -3 5596 185 90 48 chr3 64333687 64334954 -163189624 + L1MDb LINE L1 7 1218 -5191 1844 148 7 20 chr3 64334954 64335257 -163189321 + AluJb SINE Alu 5 303 -9 288 0 0 0 chr3 64335266 64335298 -163189280 + (TA)n Simple_repeat Simple_repeat 2 33 0 5596 185 90 48 chr3 64335298 64335325 -163189253 + L1MDb LINE L1 1225 1367 -5042 382 272 0 0 chr3 64335353 64335456 -163189122 + L1MD2 LINE L1 6139 6241 -118 2324 65 31 3 chr3 64336056 64336350 -163188228 - AluY SINE Alu -9 302 1 780 132 0 59 chr3 64336382 64336411 -163188167 - L1MB5 LINE L1 -9 6165 6136 1711 168 3 44 chr3 64336411 64336727 -163187851 - AluJo SINE Alu -9 303 1 780 132 0 59 chr3 64336727 64336833 -163187745 - L1MB5 LINE L1 -38 6136 6038 772 241 86 56 chr3 64336833 64337247 -163187331 - L1M2 LINE L1 -306 5815 5380 354 257 79 0 chr3 64337440 64337541 -163187037 - MIR SINE MIR -51 211 103 750 229 0 0 chr3 64337873 64338013 -163186565 + FLAM_C SINE Alu 3 142 -1 329 267 136 29 chr3 64338298 64338504 -163186074 + L2 LINE L2 3086 3313 0 364 245 189 7 chr3 64338509 64338652 -163185926 - MIR SINE MIR -24 238 70 307 265 0 0 chr3 64338908 64339010 -163185568 + L1M4 LINE L1 4381 4482 -1664 2132 98 17 3 chr3 64339017 64339313 -163185265 + AluSp SINE Alu 1 300 -13 2190 117 3 0 chr3 64339335 64339633 -163184945 + AluSg SINE Alu 1 299 -11 2640 203 71 40 chr3 64339671 64340372 -163184206 - LTR68 LTR ERV1 -5 735 13 2004 88 57 25 chr3 64340922 64341205 -163183373 + AluSx SINE Alu 1 292 -20 186 71 0 0 chr3 64341205 64341233 -163183345 + (GA)n Simple_repeat Simple_repeat 1 28 0 339 85 0 0 chr3 64341234 64341281 -163183297 + (TG)n Simple_repeat Simple_repeat 2 48 0 235 146 0 0 chr3 64342227 64342268 -163182310 + Alu SINE Alu 262 302 0 2528 71 0 0 chr3 64345227 64345536 -163179042 - AluY SINE Alu -2 309 1 261 116 0 0 chr3 64345562 64345605 -163178973 - L1MB2 LINE L1 -14 6157 6115 1464 130 183 30 chr3 64345607 64345869 -163178709 - AluSx SINE Alu 0 302 1 2081 143 15 3 chr3 64345921 64346250 -163178328 - L1MB2 LINE L1 -57 6114 5782 460 314 101 70 chr3 64346326 64346902 -163177676 + L1MEc LINE L1 92 690 -5706 2445 101 0 0 chr3 64346902 64347209 -163177369 + AluSx SINE Alu 1 307 -5 460 314 101 70 chr3 64347209 64347257 -163177321 + L1MEc LINE L1 690 735 -5661 677 214 38 8 chr3 64347315 64347446 -163177132 - AluJb SINE Alu -58 254 120 1892 266 52 51 chr3 64347522 64348524 -163176054 + L1MEc LINE L1 788 1793 -4603 2437 85 3 0 chr3 64348524 64348829 -163175749 + AluSp SINE Alu 1 306 -7 1892 266 52 51 chr3 64348829 64348947 -163175631 + L1MEc LINE L1 1793 1909 -4487 951 94 0 0 chr3 64349052 64349179 -163175399 + AluSg/x SINE Alu 174 300 -12 4267 158 46 1 chr3 64349183 64349926 -163174652 - L1MB2 LINE L1 -28 6143 5368 * 5345 198 62 35 chr3 64349917 64350137 -163174441 - L1ME LINE L1 -672 5563 5350 2160 144 0 0 chr3 64350137 64350449 -163174129 - AluSx SINE Alu 0 312 1 5345 198 62 35 chr3 64350449 64350936 -163173642 - L1ME LINE L1 -885 5350 4878 2336 93 0 7 chr3 64350936 64351237 -163173341 - AluSx SINE Alu -13 299 1 2340 96 3 0 chr3 64351247 64351548 -163173030 - AluSp SINE Alu -11 302 1 5345 198 62 35 chr3 64351548 64352461 -163172117 - L1ME LINE L1 -1365 4870 3892 732 150 66 75 chr3 64352459 64352490 -163172088 - L1ME LINE L1 -4643 1753 1723 * 1864 81 24 136 chr3 64352490 64352822 -163171756 - AluSg SINE Alu -15 295 1 732 150 66 75 chr3 64352822 64352964 -163171614 - L1ME LINE L1 -4673 1723 1580 2475 70 0 6 chr3 64352964 64353276 -163171302 - AluY SINE Alu -1 310 1 732 150 66 75 chr3 64353276 64353314 -163171264 - L1ME LINE L1 -4816 1580 1543 207 0 0 0 chr3 64353644 64353667 -163170911 + (A)n Simple_repeat Simple_repeat 1 23 0 1855 135 3 30 chr3 64353671 64353974 -163170604 + AluJo SINE Alu 11 305 -7 217 286 98 62 chr3 64354058 64354170 -163170408 + MIR SINE MIR 28 143 -119 2274 78 3 24 chr3 64354271 64354566 -163170012 - AluY SINE Alu -22 289 1 2345 94 0 7 chr3 64354620 64354919 -163169659 - AluSq SINE Alu -16 297 1 246 255 137 39 chr3 64355571 64355673 -163168905 + L2 LINE L2 3194 3305 -8 431 254 121 46 chr3 64356843 64357016 -163167562 - MIR SINE MIR -42 220 35 2245 109 0 3 chr3 64357620 64357923 -163166655 - AluSg SINE Alu -8 302 1 1960 69 0 8 chr3 64358087 64358334 -163166244 - AluY SINE Alu -66 245 1 688 237 59 82 chr3 64358345 64358471 -163166107 - L1ME4a LINE L1 -188 5933 5806 867 154 0 22 chr3 64358471 64358607 -163165971 - FLAM_C SINE Alu 0 133 1 688 237 59 82 chr3 64358607 64358834 -163165744 - L1ME4a LINE L1 -315 5806 5588 199 308 46 0 chr3 64359017 64359082 -163165496 + L2 LINE L2 3186 3253 -19 1692 52 5 0 chr3 64360250 64360443 -163164135 + MER107 DNA MER1_type 4 197 0 2272 90 7 3 chr3 64360578 64360878 -163163700 + AluSq SINE Alu 1 301 -12 459 305 95 5 chr3 64360919 64361109 -163163469 - MIR SINE MIR 0 262 56 846 172 0 14 chr3 64361760 64361905 -163162673 + FLAM_C SINE Alu 1 143 0 21 0 0 0 chr3 64361905 64361926 -163162652 + AT_rich Low_complexity Low_complexity 1 21 0 409 264 41 26 chr3 64361926 64362185 -163162393 - L1ME4a LINE L1 -70 6051 5705 550 282 141 5 chr3 64362354 64362567 -163162011 - MIR SINE MIR -5 257 16 27 0 0 0 chr3 64363673 64363700 -163160878 + AT_rich Low_complexity Low_complexity 1 27 0 1598 149 91 4 chr3 64363700 64363975 -163160603 - AluJo SINE Alu -13 299 1 4558 124 58 72 chr3 64364345 64365347 -163159231 + pTR5 LTR ERV1 743 2021 -417 366 188 52 21 chr3 64365351 64365447 -163159131 + LTR30 LTR ERV1 544 642 -80 1522 132 4 4 chr3 64365450 64365692 -163158886 + pTR5 LTR ERV1 172 413 -2025 619 176 169 7 chr3 64365952 64366088 -163158490 + L1ME3 LINE L1 5834 5991 -171 508 146 32 89 chr3 64366097 64366220 -163158358 + L1ME3 LINE L1 5905 6020 -142 241 118 0 0 chr3 64366220 64366254 -163158324 + MER3 DNA MER1_type 16 49 -160 326 259 37 37 chr3 64366254 64366362 -163158216 + L1ME3 LINE L1 6055 6162 0 459 286 0 54 chr3 64366810 64366943 -163157635 + L2 LINE L2 3134 3260 -12 2144 73 0 42 chr3 64366943 64367229 -163157349 + AluY SINE Alu 1 274 -37 459 286 0 54 chr3 64367229 64367242 -163157336 + L2 LINE L2 3260 3272 0 192 235 88 15 chr3 64368007 64368075 -163156503 - L2 LINE L2 -31 3241 3169 290 269 161 28 chr3 64368082 64368241 -163156337 - MIR SINE MIR -46 216 37 1957 189 65 5 chr3 64368764 64369177 -163155401 + L1MB7 LINE L1 5742 6179 -5 23 0 0 0 chr3 64369234 64369257 -163155321 + AT_rich Low_complexity Low_complexity 1 23 0 787 188 62 38 chr3 64369257 64369417 -163155161 - FRAM SINE Alu -2 164 1 2488 81 3 0 chr3 64369791 64370098 -163154480 - AluSp SINE Alu -5 308 1 26 0 0 0 chr3 64370763 64370789 -163153789 + AT_rich Low_complexity Low_complexity 1 26 0 225 0 0 0 chr3 64370915 64370940 -163153638 + (TTCC)n Simple_repeat Simple_repeat 3 27 0 2381 95 7 0 chr3 64370942 64371248 -163153330 - AluSq SINE Alu -2 311 4 432 130 0 0 chr3 64371433 64371502 -163153076 + (TG)n Simple_repeat Simple_repeat 2 70 0 1741 151 61 0 chr3 64371521 64371800 -163152778 - AluJb SINE Alu -16 296 1 1931 174 11 48 chr3 64371829 64372208 -163152370 + MLT1A1 LTR MaLR 1 365 0 2322 88 0 16 chr3 64372278 64372584 -163151994 + AluSg SINE Alu 3 303 -7 224 313 83 51 chr3 64373008 64373225 -163151353 - L2 LINE L2 -416 2898 2675 439 99 50 20 chr3 64373240 64373341 -163151237 + CT-rich Low_complexity Low_complexity 1 104 0 1592 170 25 3 chr3 64373341 64373624 -163150954 - AluJo SINE Alu -9 303 15 2145 91 7 7 chr3 64373975 64374279 -163150299 - AluSc SINE Alu 0 309 6 251 0 59 0 chr3 64374301 64374335 -163150243 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 1474 191 0 8 chr3 64374340 64374592 -163149986 - AluJo SINE Alu -44 268 19 1631 114 126 11 chr3 64374951 64375213 -163149365 + AluSg1 SINE Alu 1 292 -17 21 0 0 0 chr3 64375395 64375416 -163149162 + AT_rich Low_complexity Low_complexity 1 21 0 621 193 0 8 chr3 64375693 64375812 -163148766 + FLAM_A SINE Alu 3 120 -13 331 154 77 0 chr3 64375932 64375997 -163148581 + FLAM SINE Alu 62 131 -2 191 365 24 0 chr3 64376005 64376090 -163148488 - MER5A DNA MER1_type -49 140 54 2146 106 41 10 chr3 64376321 64376613 -163147965 - AluSx SINE Alu -11 301 1 718 209 99 0 chr3 64376841 64377032 -163147546 + MIR SINE MIR 53 262 0 325 265 137 52 chr3 64377131 64377188 -163147390 + L2 LINE L2 3019 3070 -243 1959 149 20 0 chr3 64377188 64377490 -163147088 + AluSx SINE Alu 1 308 -4 325 265 137 52 chr3 64377490 64377643 -163146935 + L2 LINE L2 3070 3247 -66 419 273 160 10 chr3 64377896 64378090 -163146488 - MIR SINE MIR -20 242 20 2014 106 9 75 chr3 64378799 64378935 -163145643 + AluSx SINE Alu 1 144 -168 2413 95 0 0 chr3 64378935 64379241 -163145337 + AluY SINE Alu 1 306 -5 2014 106 9 75 chr3 64379241 64379425 -163145153 + AluSx SINE Alu 144 300 -12 2456 97 0 0 chr3 64379635 64379943 -163144635 + AluSq SINE Alu 1 308 -5 1348 159 8 36 chr3 64380276 64380528 -163144050 + L1PA16 LINE L1 5913 6157 -9 1418 90 11 0 chr3 64380979 64381184 -163143394 + AluSg/x SINE Alu 104 310 0 351 0 0 0 chr3 64381922 64381961 -163142617 + (CA)n Simple_repeat Simple_repeat 2 40 0 1768 132 77 7 chr3 64382683 64382955 -163141623 + AluSx SINE Alu 1 291 -21 2132 115 3 10 chr3 64383747 64383908 -163140670 - AluSq SINE Alu -19 294 134 2291 89 17 3 chr3 64383908 64384210 -163140368 - AluSc SINE Alu -3 306 1 2132 115 3 10 chr3 64384210 64384344 -163140234 - AluSq SINE Alu -179 134 1 736 126 223 8 chr3 64384649 64384896 -163139682 + HERV9 LTR ERV1 840 1139 -5757 330 180 0 0 chr3 64384897 64384958 -163139620 + HERV9 LTR ERV1 7504 7564 -835 * 5791 109 145 67 chr3 64384954 64387029 -163137549 + pTR5 LTR ERV1 504 2438 0 3397 221 75 12 chr3 64387066 64387166 -163137412 - L1MEc LINE L1 -5224 1172 1080 2249 120 0 0 chr3 64387166 64387465 -163137113 - AluSx SINE Alu -13 299 1 3397 221 75 12 chr3 64387465 64388227 -163136351 - L1MEc LINE L1 -5316 1080 255 2361 152 61 2 chr3 64388227 64388623 -163135955 + MSTB LTR MaLR 1 419 -7 876 251 5 9 chr3 64388625 64388840 -163135738 - L1MEc LINE L1 -6138 258 45 2306 105 0 0 chr3 64388848 64389142 -163135436 - AluSx SINE Alu -15 297 4 821 167 90 6 chr3 64389144 64389300 -163135278 - AluSg/x SINE Alu -7 305 137 886 241 45 8 chr3 64389304 64389549 -163135029 - L1MEc LINE L1 -4532 1864 1611 493 257 88 14 chr3 64389775 64390095 -163134483 - LTR33 LTR ERVL -55 466 81 2293 81 7 42 chr3 64390166 64390476 -163134102 - AluSc SINE Alu -10 299 1 223 236 56 0 chr3 64390478 64390550 -163134028 - MIR SINE MIR -46 216 141 632 261 70 74 chr3 64390589 64391033 -163133545 + HAL1 LINE L1 972 1413 -1094 2111 136 0 3 chr3 64391042 64391343 -163133235 - AluSx SINE Alu -10 302 3 1820 69 0 0 chr3 64392726 64392944 -163131634 + AluY SINE Alu 1 218 -93 2043 124 7 3 chr3 64393044 64393349 -163131229 - AluSx SINE Alu 0 306 1 2160 111 0 7 chr3 64393371 64393660 -163130918 - AluSx SINE Alu -25 287 1 359 326 11 37 chr3 64394011 64394201 -163130377 + L1M4 LINE L1 2366 2550 -3596 2058 111 11 0 chr3 64395432 64395711 -163128867 + AluSx SINE Alu 1 282 -30 369 86 0 0 chr3 64395713 64395771 -163128807 + (TTAAA)n Simple_repeat Simple_repeat 3 60 0 2085 94 0 4 chr3 64396164 64396430 -163128148 + AluSq SINE Alu 34 298 -15 180 333 12 12 chr3 64398043 64398127 -163126451 - MIR SINE MIR -15 247 164 195 298 213 11 chr3 64398211 64398305 -163126273 - MIR SINE MIR -122 140 28 1725 194 27 0 chr3 64398324 64398653 -163125925 - MER58B DNA MER1_type 0 341 4 29 0 0 0 chr3 64399596 64399625 -163124953 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 64399687 64399710 -163124868 + AT_rich Low_complexity Low_complexity 1 23 0 1952 104 42 7 chr3 64399921 64400238 -163124340 + AluSg1 SINE Alu 1 309 0 300 91 0 0 chr3 64401079 64401123 -163123455 + (CA)n Simple_repeat Simple_repeat 2 45 0 639 323 50 0 chr3 64402255 64402577 -163122001 - L1M4 LINE L1 -1910 4236 3899 206 239 0 45 chr3 64402582 64402649 -163121929 + GA-rich Low_complexity Low_complexity 3 66 0 669 282 66 0 chr3 64403445 64403672 -163120906 - MIR SINE MIR 0 262 21 810 243 104 27 chr3 64403703 64403846 -163120732 - MER58 DNA MER1_type -57 284 153 1757 155 3 14 chr3 64403846 64404137 -163120441 - AluJb SINE Alu -24 288 1 810 243 104 27 chr3 64404137 64404252 -163120326 - MER58 DNA MER1_type -188 153 6 368 246 36 18 chr3 64404582 64404692 -163119886 + L1MC5 LINE L1 7743 7854 -107 934 51 0 0 chr3 64404782 64404900 -163119678 - AluY SINE Alu 0 311 194 257 197 211 0 chr3 64405108 64405184 -163119394 + MIR SINE MIR 61 152 -110 377 340 58 5 chr3 64405227 64405415 -163119163 - MIR SINE MIR -14 248 51 2387 167 52 81 chr3 64405645 64406189 -163118389 - L1MD3 LINE L1 -15 7980 7453 1656 205 52 50 chr3 64406189 64406538 -163118040 + MLT1C LTR MaLR 3 355 -112 2352 107 7 0 chr3 64406538 64406847 -163117731 - AluSx SINE Alu -1 311 1 1656 205 52 50 chr3 64406847 64406961 -163117617 + MLT1C LTR MaLR 355 467 0 2387 167 52 81 chr3 64406961 64407010 -163117568 - L1MD3 LINE L1 -542 7453 7404 343 143 125 0 chr3 64409576 64409632 -163114946 - L1MC4 LINE L1 -535 7507 7445 301 243 48 19 chr3 64410140 64410243 -163114335 + MIR SINE MIR 87 192 -70 291 266 8 81 chr3 64412842 64412966 -163111612 - MIR SINE MIR -56 152 38 23 0 0 0 chr3 64413022 64413045 -163111533 + AT_rich Low_complexity Low_complexity 1 23 0 382 248 106 14 chr3 64413060 64413201 -163111377 - MIR SINE MIR -28 234 81 441 0 0 0 chr3 64414324 64414373 -163110205 + (CTG)n Simple_repeat Simple_repeat 2 50 0 416 308 130 5 chr3 64414401 64414586 -163109992 - MIR SINE MIR -50 212 5 609 176 99 2 chr3 64414979 64415257 -163109321 + MER113 DNA MER1_type? 44 412 -109 1669 127 0 124 chr3 64416424 64416746 -163107832 + AluJb SINE Alu 1 282 -30 292 198 0 58 chr3 64417096 64417182 -163107396 + A-rich Low_complexity Low_complexity 1 81 0 1005 132 14 0 chr3 64417263 64417451 -163107127 + AluSg/x SINE Alu 137 326 0 445 276 19 4 chr3 64417775 64417918 -163106660 + MIR SINE MIR 12 154 -62 848 132 0 23 chr3 64418123 64418252 -163106326 - FLAM_C SINE Alu -3 130 5 2328 96 3 10 chr3 64418296 64418474 -163106104 - AluSq SINE Alu -1 312 135 2611 47 0 0 chr3 64418474 64418771 -163105807 - AluY SINE Alu -13 298 2 2328 96 3 10 chr3 64418771 64418906 -163105672 - AluSq SINE Alu -178 135 1 1352 95 0 0 chr3 64419509 64419677 -163104901 + AluSx SINE Alu 1 168 -144 2274 96 0 13 chr3 64420027 64420328 -163104250 + AluSg SINE Alu 1 297 -13 1417 198 54 4 chr3 64420495 64420773 -163103805 - AluJo SINE Alu -20 292 1 507 235 34 8 chr3 64423491 64423610 -163100968 - FLAM_C SINE Alu -10 123 2 2372 96 0 19 chr3 64423861 64424175 -163100403 + AluSq SINE Alu 4 311 -2 1192 182 97 55 chr3 64424258 64424518 -163100060 + MER2 DNA MER2_type 1 279 -65 1587 169 0 25 chr3 64424518 64424796 -163099782 - AluJo SINE Alu -14 298 28 1192 182 97 55 chr3 64424796 64424865 -163099713 + MER2 DNA MER2_type 279 344 0 240 257 297 0 chr3 64424882 64424983 -163099595 + L3 LINE CR1 1441 1571 -6 1894 111 47 4 chr3 64425314 64425593 -163098985 - AluSg SINE Alu -18 292 2 451 328 67 25 chr3 64426382 64426620 -163097958 + MIR SINE MIR 14 261 -1 910 276 25 4 chr3 64426673 64426916 -163097662 - MIR SINE MIR 0 262 15 902 82 0 0 chr3 64427301 64427411 -163097167 + AluSc SINE Alu 1 110 -199 728 234 129 22 chr3 64427416 64427694 -163096884 + L1ME3 LINE L1 5818 6125 -37 1720 131 4 0 chr3 64427704 64427948 -163096630 + AluSx SINE Alu 56 300 -12 22 0 0 0 chr3 64428464 64428486 -163096092 + AT_rich Low_complexity Low_complexity 1 22 0 2196 118 0 3 chr3 64428494 64428800 -163095778 + AluSx SINE Alu 3 307 -5 298 225 28 0 chr3 64430737 64430808 -163093770 - MER58A DNA MER1_type 0 224 152 373 296 0 0 chr3 64430815 64430903 -163093675 - MER58A DNA MER1_type 0 110 23 523 222 131 60 chr3 64432949 64433102 -163091476 + L1ME2 LINE L1 5885 6026 -138 2179 102 0 7 chr3 64433102 64433397 -163091181 + AluY SINE Alu 1 293 -18 2187 110 3 0 chr3 64433404 64433686 -163090892 + AluSx SINE Alu 14 296 -16 523 222 131 60 chr3 64433686 64433776 -163090802 + L1ME2 LINE L1 6031 6154 -10 2392 57 23 0 chr3 64433890 64434189 -163090389 + AluY SINE Alu 1 306 -5 472 260 148 20 chr3 64434535 64434731 -163089847 + MIR SINE MIR 31 251 -11 377 164 407 0 chr3 64435230 64435370 -163089208 + MER3 DNA MER1_type 7 203 -6 2019 157 0 0 chr3 64435401 64435706 -163088872 + AluSx SINE Alu 1 305 -7 205 195 0 0 chr3 64436082 64436123 -163088455 + A-rich Low_complexity Low_complexity 1 41 0 2384 82 0 0 chr3 64436276 64436580 -163087998 + AluY SINE Alu 1 304 -7 897 231 57 5 chr3 64436655 64436867 -163087711 - MER58A DNA MER1_type 0 224 2 1380 179 28 55 chr3 64438326 64438616 -163085962 + AluJo SINE Alu 1 282 -30 1963 149 0 9 chr3 64438755 64439071 -163085507 + AluSq SINE Alu 1 313 0 220 310 78 26 chr3 64440131 64440247 -163084331 - L2 LINE L2 -218 3054 2933 1573 185 93 3 chr3 64440743 64441245 -163083333 - LTR69 LTR ERVL 0 588 1 1353 197 27 47 chr3 64441822 64442121 -163082457 + AluJo SINE Alu 1 293 -19 321 228 79 20 chr3 64442128 64442229 -163082349 + L1MEd LINE L1 718 824 -5295 1726 165 105 54 chr3 64442266 64442707 -163081871 + L1MB7 LINE L1 5655 6125 -59 1517 167 94 11 chr3 64442707 64442982 -163081596 + AluJb SINE Alu 1 298 -14 1726 165 105 54 chr3 64442982 64443024 -163081554 + L1MB7 LINE L1 6125 6163 -21 227 263 18 0 chr3 64443063 64443120 -163081458 + L2 LINE L2 3250 3307 -6 468 263 99 30 chr3 64443157 64443392 -163081186 + L1MEd LINE L1 894 1111 -5199 2245 113 7 0 chr3 64443392 64443702 -163080876 + AluSx SINE Alu 1 312 0 468 263 99 30 chr3 64443702 64444023 -163080555 + L1MEd LINE L1 1111 1527 -4783 326 250 166 40 chr3 64444023 64444319 -163080259 + L1MEd LINE L1 2646 2978 -3151 2078 133 0 0 chr3 64444394 64444687 -163079891 + AluSq SINE Alu 1 293 -20 1409 255 26 71 chr3 64444912 64445445 -163079133 + MLT2B1 LTR ERVL 1 509 -11 251 311 33 26 chr3 64445561 64445712 -163078866 + L1MEd LINE L1 3996 4147 -1982 988 159 51 0 chr3 64445718 64445894 -163078684 - Tigger7 DNA MER2_type -1 2486 2302 1419 171 7 88 chr3 64445894 64446199 -163078379 + AluJo SINE Alu 1 280 -32 997 128 32 27 chr3 64446210 64446397 -163078181 - Tigger7 DNA MER2_type -175 2412 2225 635 175 79 0 chr3 64446390 64446516 -163078062 - Tigger7 DNA MER2_type -2350 137 2 * 308 288 121 20 chr3 64446516 64446714 -163077864 + L1MEd LINE L1 4154 4371 -1758 1124 145 0 18 chr3 64446715 64446881 -163077697 + AluSx SINE Alu 1 163 -149 572 151 0 0 chr3 64446981 64447067 -163077511 - AluJ/FLAM SINE Alu -225 87 2 2146 119 0 16 chr3 64447455 64447765 -163076813 + AluSq SINE Alu 1 305 -8 2216 97 7 13 chr3 64448509 64448817 -163075761 + AluSx SINE Alu 1 306 -6 299 289 48 0 chr3 64449525 64449608 -163074970 - L2 LINE L2 0 3313 3227 330 200 0 0 chr3 64449804 64449864 -163074714 - L2 LINE L2 -358 2956 2897 1409 216 55 14 chr3 64450513 64450804 -163073774 + AluJo SINE Alu 1 303 -9 487 236 94 16 chr3 64450809 64450936 -163073642 - MER5B DNA MER1_type -4 174 38 2028 120 0 11 chr3 64450995 64451279 -163073299 - AluSx SINE Alu -31 281 1 2114 89 14 3 chr3 64451310 64451601 -163072977 + AluY SINE Alu 1 294 -17 2087 117 0 17 chr3 64452990 64453288 -163071290 + AluSx SINE Alu 2 294 -18 532 129 0 21 chr3 64453313 64453406 -163071172 + FLAM SINE Alu 41 131 -12 2228 94 7 3 chr3 64454311 64454608 -163069970 + AluSx SINE Alu 1 298 -14 2395 75 0 13 chr3 64454841 64455147 -163069431 + AluY SINE Alu 1 302 -9 851 174 99 12 chr3 64455970 64456131 -163068447 - FRAM SINE Alu -8 168 1 2103 123 3 19 chr3 64456273 64456589 -163067989 + AluSx SINE Alu 1 311 -1 2186 120 0 3 chr3 64456678 64456987 -163067591 + AluSg SINE Alu 1 308 -2 21 0 0 0 chr3 64457479 64457500 -163067078 + AT_rich Low_complexity Low_complexity 1 21 0 263 342 108 0 chr3 64457676 64457787 -163066791 + L2 LINE L2 3191 3313 0 1846 151 13 3 chr3 64458439 64458737 -163065841 + AluSx SINE Alu 1 301 -11 795 234 135 0 chr3 64459848 64460070 -163064508 + MIR SINE MIR 11 262 0 21 0 0 0 chr3 64460797 64460818 -163063760 + AT_rich Low_complexity Low_complexity 1 21 0 441 225 0 45 chr3 64463956 64464067 -163060511 - MIR SINE MIR -4 258 153 2070 108 25 0 chr3 64464555 64464834 -163059744 + AluSx SINE Alu 1 286 -26 596 168 61 15 chr3 64465071 64465202 -163059376 + FLAM_C SINE Alu 1 137 -6 21 0 0 0 chr3 64465404 64465425 -163059153 + AT_rich Low_complexity Low_complexity 1 21 0 740 160 15 15 chr3 64465439 64465570 -163059008 + AluJb SINE Alu 1 131 -181 1889 115 10 47 chr3 64465574 64465692 -163058886 + AluSx SINE Alu 26 147 -165 2358 66 28 0 chr3 64465692 64465979 -163058599 + AluY SINE Alu 1 295 -16 1889 115 10 47 chr3 64465979 64466156 -163058422 + AluSx SINE Alu 147 310 -2 2023 145 0 22 chr3 64466848 64466987 -163057591 + AluSx SINE Alu 1 142 -170 2402 78 0 0 chr3 64466987 64467283 -163057295 + AluSg SINE Alu 1 296 -14 2023 145 0 22 chr3 64467283 64467461 -163057117 + AluSx SINE Alu 142 311 -1 455 256 178 27 chr3 64467580 64467873 -163056705 + L1MC4a LINE L1 5574 5910 -1898 * 1904 141 61 52 chr3 64467621 64468082 -163056496 + L1MB7 LINE L1 5619 6074 -106 261 0 0 0 chr3 64468082 64468111 -163056467 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2065 120 0 0 chr3 64468116 64468392 -163056186 - AluSx SINE Alu -36 276 1 1904 141 61 52 chr3 64468392 64468444 -163056134 + L1MB7 LINE L1 6077 6164 -16 1116 141 35 46 chr3 64468471 64468771 -163055807 + MLT1E3 LTR MaLR 281 624 0 2416 97 3 0 chr3 64468811 64469122 -163055456 - AluSx SINE Alu 0 312 1 397 179 75 66 chr3 64469130 64469166 -163055412 - MIR SINE MIR -12 250 216 387 0 0 0 chr3 64469166 64469209 -163055369 + (TG)n Simple_repeat Simple_repeat 2 44 0 2103 79 0 28 chr3 64469209 64469500 -163055078 - AluSc SINE Alu -26 283 1 397 179 75 66 chr3 64469500 64469568 -163055010 - MIR SINE MIR -45 217 144 180 0 0 0 chr3 64469722 64469742 -163054836 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1973 149 3 10 chr3 64469769 64470078 -163054500 - AluJo SINE Alu -5 307 1 2299 95 7 0 chr3 64470280 64470576 -163054002 - AluSq SINE Alu -15 298 1 2426 76 7 0 chr3 64471560 64471862 -163052716 - AluSp SINE Alu -9 304 1 2608 56 7 0 chr3 64471875 64472181 -163052397 - AluY SINE Alu -3 308 1 577 211 79 37 chr3 64473765 64473955 -163050623 + MIR SINE MIR 4 201 -61 256 224 138 0 chr3 64474299 64474357 -163050221 - MIR SINE MIR -110 98 33 2114 117 0 29 chr3 64474776 64475084 -163049494 - AluSx SINE Alu -13 299 1 454 256 58 31 chr3 64475326 64475517 -163049061 - MIR3 SINE MIR -5 203 8 2421 53 0 0 chr3 64476055 64476336 -163048242 - AluY SINE Alu -17 294 14 210 304 101 0 chr3 64476673 64476752 -163047826 + L2 LINE L2 3186 3272 0 2339 107 0 0 chr3 64476828 64477137 -163047441 + AluSg SINE Alu 1 309 -1 297 0 0 0 chr3 64477443 64477476 -163047102 + (GA)n Simple_repeat Simple_repeat 2 34 0 1718 150 62 4 chr3 64477934 64478208 -163046370 + AluSx SINE Alu 1 290 -22 183 379 129 0 chr3 64478265 64478405 -163046173 + MIR SINE MIR 105 262 0 1802 157 21 0 chr3 64478420 64478706 -163045872 - AluJb SINE Alu -18 294 3 293 174 14 14 chr3 64480609 64480678 -163043900 - MER102a DNA MER1_type -37 293 225 21 0 0 0 chr3 64481277 64481298 -163043280 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr3 64481337 64481360 -163043218 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 1299 166 119 36 chr3 64482457 64482735 -163041843 - AluJb SINE Alu 0 302 2 213 288 59 85 chr3 64483164 64483282 -163041296 + L3 LINE CR1 1452 1566 -11 572 242 146 82 chr3 64485995 64486412 -163038166 + MLT1K LTR MaLR 145 588 0 331 322 34 64 chr3 64486770 64486924 -163037654 + L2 LINE L2 2834 2980 -292 2523 73 0 0 chr3 64486924 64487227 -163037351 - AluY SINE Alu -8 303 1 331 322 34 64 chr3 64487227 64487305 -163037273 + L2 LINE L2 2980 3059 -213 2127 125 3 10 chr3 64487570 64487859 -163036719 + AluSq SINE Alu 1 287 -26 304 277 32 0 chr3 64487859 64487953 -163036625 + L1MC4 LINE L1 6615 6711 -1331 197 238 0 0 chr3 64487964 64488006 -163036572 - MIR SINE MIR -18 244 203 519 295 121 31 chr3 64489123 64489445 -163035133 + Charlie7 DNA MER1_type 5 355 -2257 617 206 174 18 chr3 64489451 64489669 -163034909 + Charlie7 DNA MER1_type 1498 1749 -863 601 136 11 0 chr3 64490885 64490973 -163033605 + FRAM SINE Alu 76 164 -12 24 32 0 0 chr3 64490999 64491030 -163033548 + AT_rich Low_complexity Low_complexity 1 31 0 1955 161 3 3 chr3 64491034 64491339 -163033239 - AluJb SINE Alu -7 305 1 911 266 31 40 chr3 64493918 64494137 -163030441 - LTR16C LTR ERVL -4 487 270 2394 86 3 0 chr3 64494137 64494441 -163030137 + AluSc SINE Alu 1 305 -4 911 266 31 40 chr3 64494441 64494548 -163030030 - LTR16C LTR ERVL -221 270 164 703 263 116 19 chr3 64494684 64495004 -163029574 - MER113 DNA MER1_type? -89 432 82 201 39 0 0 chr3 64495686 64495712 -163028866 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 1842 135 29 11 chr3 64495715 64495996 -163028582 + AluJb SINE Alu 1 286 -26 543 222 60 49 chr3 64496166 64496351 -163028227 + MIR3 SINE MIR 19 205 -3 569 99 0 11 chr3 64496731 64496822 -163027756 + (TATATG)n Simple_repeat Simple_repeat 5 94 0 746 206 8 0 chr3 64496822 64496948 -163027630 + MER82 DNA MER2_type 1 127 -526 769 163 0 0 chr3 64496948 64497071 -163027507 - AluJb SINE Alu -14 298 176 2195 126 0 3 chr3 64498107 64498417 -163026161 - AluSg SINE Alu -1 309 1 2373 87 0 0 chr3 64498696 64498996 -163025582 + AluY SINE Alu 1 300 -11 234 306 105 40 chr3 64499196 64499595 -163024983 - L2 LINE L2 -537 2777 2353 184 280 0 0 chr3 64500059 64500109 -163024469 - MIR SINE MIR -164 98 49 2311 92 17 0 chr3 64500184 64500477 -163024101 + AluSx SINE Alu 1 298 -14 22 0 0 0 chr3 64501779 64501801 -163022777 + AT_rich Low_complexity Low_complexity 1 22 0 501 250 132 25 chr3 64502169 64502373 -163022205 + MLT1L LTR MaLR 363 588 -27 867 194 18 35 chr3 64502468 64502638 -163021940 - FAM SINE Alu -7 168 2 2154 113 3 3 chr3 64502695 64502986 -163021592 + AluJb SINE Alu 15 305 -7 311 245 242 45 chr3 64503171 64503440 -163021138 - L2 LINE L2 -22 3291 2970 420 246 23 54 chr3 64503613 64503743 -163020835 - Charlie4 DNA MER1_type 0 1961 1836 527 214 37 102 chr3 64503792 64503881 -163020697 - MER97c DNA MER1_type? -911 179 107 2108 72 76 7 chr3 64503881 64504158 -163020420 - AluY SINE Alu -15 296 1 527 214 37 102 chr3 64504158 64504255 -163020323 - MER97c DNA MER1_type? -983 107 5 1967 126 3 30 chr3 64504255 64504557 -163020021 - AluSx SINE Alu -18 294 1 1309 144 0 10 chr3 64504674 64504882 -163019696 + AluSg/x SINE Alu 104 309 -1 2276 116 3 0 chr3 64505240 64505543 -163019035 - AluSx SINE Alu -8 304 1 686 270 22 0 chr3 64506302 64506480 -163018098 - MIR SINE MIR -80 182 1 208 261 17 17 chr3 64506491 64506610 -163017968 + (ATGGTG)n Simple_repeat Simple_repeat 4 122 0 780 289 63 42 chr3 64506704 64507457 -163017121 + L2 LINE L2 2544 3308 -5 194 283 242 20 chr3 64507500 64507599 -163016979 - MIR SINE MIR -137 125 5 923 245 10 0 chr3 64507739 64507931 -163016647 - MER58A DNA MER1_type -3 221 28 553 169 0 0 chr3 64508648 64508737 -163015841 - LTR23 LTR ERV1 -28 409 321 3904 157 73 45 chr3 64508923 64509720 -163014858 - L1MB5 LINE L1 -8 6166 5348 278 247 123 15 chr3 64509804 64509967 -163014611 - L1M2 LINE L1 -284 5880 5703 1984 121 0 4 chr3 64510255 64510519 -163014059 - AluSg SINE Alu -47 263 1 373 169 70 0 chr3 64510519 64510590 -163013988 + L1MB5 LINE L1 6092 6167 -7 325 235 76 53 chr3 64510937 64511069 -163013509 + MIR SINE MIR 84 218 -44 327 239 234 18 chr3 64511155 64511322 -163013256 + MIR SINE MIR 46 248 -14 314 280 75 110 chr3 64511863 64512357 -163012221 - L2 LINE L2 -5 3267 2793 597 261 74 36 chr3 64513186 64513482 -163011096 + L1ME4a LINE L1 5600 5912 -209 1833 158 28 3 chr3 64513482 64513773 -163010805 - AluJb SINE Alu -14 298 1 597 261 74 36 chr3 64513773 64513813 -163010765 + L1ME4a LINE L1 5912 5949 -172 2268 99 3 10 chr3 64515624 64515790 -163008788 - AluSx SINE Alu -12 300 135 2078 145 0 0 chr3 64515790 64516086 -163008492 - AluSx SINE Alu -16 296 1 2268 99 3 10 chr3 64516086 64516221 -163008357 - AluSx SINE Alu -177 135 1 346 316 90 7 chr3 64516270 64516425 -163008153 - MIR3 SINE MIR -2 206 39 279 285 169 85 chr3 64516531 64517176 -163007402 + L2 LINE L2 2585 3272 0 710 205 58 7 chr3 64518147 64518407 -163006171 + MLT1A1 LTR MaLR 1 365 0 1105 161 0 6 chr3 64518487 64518676 -163005902 + AluJb SINE Alu 120 307 0 2099 129 3 0 chr3 64519258 64519552 -163005026 + AluSx SINE Alu 1 295 -17 3829 224 69 62 chr3 64519568 64519589 -163004989 + L1MC4 LINE L1 6604 6623 -1419 1950 145 10 3 chr3 64519589 64519899 -163004679 + AluJo SINE Alu 1 312 0 2384 80 0 20 chr3 64519902 64520201 -163004377 + AluSc SINE Alu 1 293 -16 3829 224 69 62 chr3 64520201 64521603 -163002975 + L1MC4 LINE L1 6624 8040 -2 2252 92 0 0 chr3 64522004 64522313 -163002265 + AluY SINE Alu 1 309 0 31 0 0 0 chr3 64523104 64523135 -163001443 + AT_rich Low_complexity Low_complexity 1 31 0 757 181 0 0 chr3 64523142 64523258 -163001320 - FLAM_C SINE Alu -26 117 2 526 290 8 0 chr3 64523408 64523532 -163001046 - L2 LINE L2 -1 3271 3147 510 258 24 0 chr3 64523559 64523683 -163000895 - LTR16C LTR ERVL -213 278 152 197 195 134 49 chr3 64524002 64524084 -163000494 + MIR SINE MIR 22 110 -98 778 258 74 4 chr3 64524108 64524352 -163000226 + MIR SINE MIR 2 262 0 291 137 232 32 chr3 64524391 64524486 -163000092 + MER113 DNA MER1_type? 1 114 -407 317 188 87 65 chr3 64525022 64525149 -162999429 - MLT1G LTR MaLR -1 589 269 255 343 0 0 chr3 64525185 64525255 -162999323 - MLT1G LTR MaLR -320 229 160 212 307 40 0 chr3 64525334 64525409 -162999169 - L2 LINE L2 0 3272 3195 219 286 0 0 chr3 64525445 64525501 -162999077 + L2 LINE L2 3251 3306 -7 893 125 1 1 chr3 64526212 64526354 -162998224 - L1P5 LINE L1 -435 5719 5578 181 396 57 0 chr3 64526360 64526466 -162998112 - MIR3 SINE MIR -54 154 43 4406 80 4 0 chr3 64527127 64527680 -162996898 - L1PA13 LINE L1 -16 6147 5593 2365 216 20 2 chr3 64527793 64528238 -162996340 + MER82 DNA MER2_type 195 647 -6 893 246 17 0 chr3 64528463 64528638 -162995940 - MER45A DNA AcHobo 0 178 1 204 40 0 0 chr3 64528987 64529012 -162995566 + (CA)n Simple_repeat Simple_repeat 2 26 0 391 317 131 14 chr3 64529116 64529429 -162995149 + L1ME LINE L1 5407 5767 -395 1415 197 65 43 chr3 64529666 64529800 -162994778 - Charlie1 DNA MER1_type 0 2761 2631 1644 141 24 54 chr3 64529800 64529963 -162994615 - AluJo SINE Alu -23 289 138 1735 166 7 10 chr3 64529963 64530252 -162994326 - AluJb SINE Alu -24 288 1 1644 141 24 54 chr3 64530252 64530386 -162994192 - AluJo SINE Alu -174 138 1 1415 197 65 43 chr3 64530386 64530621 -162993957 - Charlie1 DNA MER1_type -130 2631 2384 309 196 71 0 chr3 64530661 64530717 -162993861 - Charlie1 DNA MER1_type -2700 61 2 287 311 0 58 chr3 64530959 64531062 -162993516 + L2 LINE L2 2963 3059 -213 519 324 107 16 chr3 64531296 64531605 -162992973 - L1MC4a LINE L1 -1934 5874 5538 250 254 24 35 chr3 64531705 64531841 -162992737 + L1MC4 LINE L1 7315 7451 -591 2005 139 3 0 chr3 64531841 64532129 -162992449 - AluJo SINE Alu -23 289 1 250 254 24 35 chr3 64532129 64532246 -162992332 + L1MC4 LINE L1 7451 7667 -375 * 623 274 117 37 chr3 64532243 64532645 -162991933 + L1MC4 LINE L1 7609 8042 0 23 0 0 0 chr3 64534529 64534552 -162990026 + AT_rich Low_complexity Low_complexity 1 23 0 312 263 42 25 chr3 64535055 64535173 -162989405 + MLT1K LTR MaLR 180 299 -289 285 150 0 0 chr3 64535354 64535394 -162989184 + MLT1K LTR MaLR 529 568 -20 2079 132 0 0 chr3 64536331 64536618 -162987960 - AluSx SINE Alu -25 287 1 589 288 87 13 chr3 64537039 64537268 -162987310 + MIR SINE MIR 17 262 0 12444 107 18 17 chr3 64537284 64538743 -162985835 + Tigger1 DNA MER2_type 1 1457 -961 2166 115 3 0 chr3 64538743 64539038 -162985540 + AluSx SINE Alu 1 296 -16 1863 119 15 0 chr3 64539041 64539310 -162985268 + AluSx SINE Alu 37 309 -3 12444 107 18 17 chr3 64539310 64539661 -162984917 + Tigger1 DNA MER2_type 1458 1817 -601 832 149 15 0 chr3 64539906 64540040 -162984538 + FRAM SINE Alu 27 162 -14 324 158 0 0 chr3 64540041 64540098 -162984480 + (TA)n Simple_repeat Simple_repeat 2 58 0 210 150 0 0 chr3 64540181 64540221 -162984357 + (TTCA)n Simple_repeat Simple_repeat 3 42 0 257 218 172 0 chr3 64540293 64540380 -162984198 - MIR3 SINE MIR -18 190 89 644 294 97 21 chr3 64540522 64540760 -162983818 + MIR SINE MIR 6 261 -1 1796 149 3 44 chr3 64540951 64541272 -162983306 + AluJo SINE Alu 5 312 0 3240 144 3 25 chr3 64541282 64541777 -162982801 + L1MB3 LINE L1 5178 5659 -524 4324 112 18 0 chr3 64541777 64542376 -162982202 + L1PB1 LINE L1 5539 6148 -3 3240 144 3 25 chr3 64542376 64542502 -162982076 + L1MB3 LINE L1 5659 5786 -397 2480 123 33 3 chr3 64542737 64543126 -162981452 + L1MB3 LINE L1 5783 6183 0 1798 161 3 40 chr3 64543265 64543587 -162980991 + AluJb SINE Alu 1 310 -2 22 0 0 0 chr3 64545388 64545410 -162979168 + AT_rich Low_complexity Low_complexity 1 22 0 997 147 85 17 chr3 64545848 64546025 -162978553 + AluSc SINE Alu 115 303 -6 198 0 0 0 chr3 64546419 64546441 -162978137 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2297 82 0 10 chr3 64546443 64546734 -162977844 - AluSx SINE Alu -24 288 1 2084 148 0 3 chr3 64547902 64548200 -162976378 + AluJb SINE Alu 1 297 -15 1962 142 0 30 chr3 64550106 64550409 -162974169 + AluJo SINE Alu 1 294 -18 185 0 0 39 chr3 64550603 64550629 -162973949 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 1147 167 20 0 chr3 64550679 64550877 -162973701 + L1MD3 LINE L1 7793 7994 -1 249 282 71 12 chr3 64551618 64551703 -162972875 - MIR3 SINE MIR -7 201 112 579 236 128 57 chr3 64552520 64552737 -162971841 - L2 LINE L2 -2 3311 3065 1926 154 7 0 chr3 64552737 64553050 -162971528 - AluJb SINE Alu 0 315 1 579 236 128 57 chr3 64553050 64553127 -162971451 - L2 LINE L2 -248 3065 2995 2322 98 0 13 chr3 64553626 64553942 -162970636 - AluSx SINE Alu 0 312 1 29 0 0 0 chr3 64555240 64555269 -162969309 + AT_rich Low_complexity Low_complexity 1 29 0 275 289 8 25 chr3 64555376 64555497 -162969081 + L1MC1 LINE L1 5706 5824 -1984 3430 164 5 14 chr3 64555507 64556085 -162968493 + L1MC1 LINE L1 5753 6325 -8 413 216 93 0 chr3 64556086 64556183 -162968395 + MER41D LTR ERV1 361 466 -91 181 0 0 65 chr3 64556717 64556748 -162967830 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 1517 225 54 27 chr3 64557057 64557502 -162967076 + Charlie4a DNA MER1_type 18 474 -34 281 251 37 3 chr3 64557687 64557791 -162966787 - L1ME LINE L1 -344 5777 5668 2095 129 3 0 chr3 64557792 64558087 -162966491 - AluSg SINE Alu -14 296 1 192 227 114 0 chr3 64558220 64558264 -162966314 - MIR SINE MIR -22 240 192 1042 177 0 21 chr3 64558264 64558456 -162966122 - AluJ SINE Alu -2 310 123 2548 67 39 25 chr3 64558505 64558861 -162965717 - L1PA13 LINE L1 0 6163 5803 871 131 0 0 chr3 64558866 64558988 -162965590 - AluJ SINE Alu -189 123 2 354 197 41 16 chr3 64558988 64559081 -162965497 - MIR SINE MIR -61 201 107 205 358 109 0 chr3 64560189 64560295 -162964283 + MIR SINE MIR 40 154 -60 180 0 0 0 chr3 64560794 64560814 -162963764 + (T)n Simple_repeat Simple_repeat 1 20 0 21 71 0 0 chr3 64561281 64561323 -162963255 + AT_rich Low_complexity Low_complexity 1 42 0 302 308 8 0 chr3 64563744 64563874 -162960704 + GA-rich Low_complexity Low_complexity 2 132 0 193 29 29 29 chr3 64564665 64564700 -162959878 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 667 238 0 7 chr3 64564715 64564866 -162959712 - L1ME2 LINE L1 -11 6153 6004 351 243 86 78 chr3 64565047 64565290 -162959288 + L1MC4a LINE L1 5689 5933 -1875 1228 142 46 14 chr3 64565500 64565718 -162958860 + AluJb SINE Alu 86 310 -2 238 24 71 24 chr3 64565736 64565778 -162958800 + A-rich Low_complexity Low_complexity 4 47 0 901 209 0 6 chr3 64565779 64565942 -162958636 + AluJo SINE Alu 1 162 -150 2233 131 0 6 chr3 64566054 64566368 -162958210 - AluSx SINE Alu 0 312 1 1576 114 59 8 chr3 64566368 64566622 -162957956 + Tigger1 DNA MER2_type 1823 2089 -329 43711 40 1 2 chr3 64566622 64572781 -162951797 + L1PA4 LINE L1 2 6154 -1 1870 109 164 0 chr3 64572797 64573090 -162951488 + Tigger1 DNA MER2_type 2078 2418 0 21 36 0 0 chr3 64573097 64573125 -162951453 + AT_rich Low_complexity Low_complexity 1 28 0 390 318 9 9 chr3 64573343 64573450 -162951128 + MIR SINE MIR 15 121 -141 1436 187 113 50 chr3 64573452 64573832 -162950746 + MLT1E3 LTR MaLR 1 404 -220 304 306 111 12 chr3 64573974 64574139 -162950439 - MIR SINE MIR -55 207 33 1889 155 3 26 chr3 64575236 64575545 -162949033 - AluJb SINE Alu -10 302 1 275 300 41 77 chr3 64575921 64576091 -162948487 + MIR SINE MIR 68 231 -31 25 31 0 0 chr3 64576480 64576512 -162948066 + AT_rich Low_complexity Low_complexity 1 32 0 2421 214 67 31 chr3 64576772 64577343 -162947235 + MLT1E LTR MaLR 3 593 0 205 352 66 11 chr3 64577845 64577936 -162946642 + L2 LINE L2 3145 3240 -32 385 97 111 14 chr3 64578455 64578527 -162946051 - L1PB4 LINE L1 0 6156 6078 265 241 19 0 chr3 64578963 64579017 -162945561 + L2 LINE L2 3218 3272 0 * 422 203 16 89 chr3 64579014 64579137 -162945441 - MIR SINE MIR -74 134 21 2160 136 0 0 chr3 64579548 64579858 -162944720 - AluSq SINE Alu -3 310 1 211 379 10 0 chr3 64579891 64579994 -162944584 - L2 LINE L2 -30 3242 3139 360 268 74 32 chr3 64580121 64580311 -162944267 + L1MC5 LINE L1 7732 7929 -32 478 291 18 50 chr3 64580319 64580539 -162944039 + MIR SINE MIR 50 262 0 2072 131 0 7 chr3 64580644 64580949 -162943629 - AluSq SINE Alu -10 303 1 21 0 0 0 chr3 64581272 64581293 -162943285 + AT_rich Low_complexity Low_complexity 1 21 0 384 292 0 8 chr3 64581403 64581523 -162943055 + MIR SINE MIR 89 207 -55 2018 128 0 0 chr3 64582231 64582505 -162942073 + AluSx SINE Alu 3 276 -36 207 0 0 0 chr3 64582511 64582534 -162942044 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 247 286 143 0 chr3 64582654 64582759 -162941819 - L2 LINE L2 -4 3309 3190 1024 221 17 25 chr3 64582781 64583016 -162941562 - MIR SINE MIR -14 248 16 1682 93 4 4 chr3 64583169 64583395 -162941183 + Charlie3 DNA MER1_type 2481 2706 -4 195 292 21 0 chr3 64583525 64583573 -162941005 - L2 LINE L2 -10 3303 3255 324 278 9 43 chr3 64584687 64584802 -162939776 + MIR3 SINE MIR 91 201 -7 405 309 27 0 chr3 64585261 64585371 -162939207 - MIR SINE MIR -63 145 33 437 284 142 18 chr3 64585772 64585990 -162938588 - MIR SINE MIR -10 252 8 2407 87 0 16 chr3 64586611 64586922 -162937656 - AluSg SINE Alu -4 306 1 198 264 57 0 chr3 64587230 64587283 -162937295 - L3 LINE CR1 -5 1572 1517 2114 133 10 0 chr3 64587402 64587702 -162936876 - AluJb SINE Alu -9 303 1 334 374 121 11 chr3 64588051 64588233 -162936345 - L2 LINE L2 -1 3271 3070 317 247 58 92 chr3 64588216 64588390 -162936188 + MIR SINE MIR 89 256 -6 * 261 237 52 52 chr3 64588394 64588491 -162936087 - L2 LINE L2 -208 3064 2968 339 277 31 15 chr3 64588610 64588740 -162935838 + MER5A DNA MER1_type 30 161 -28 278 307 109 10 chr3 64588976 64589077 -162935501 - MIR SINE MIR -65 143 33 356 274 89 25 chr3 64589110 64589267 -162935311 + MER117 DNA MER1_type 5 171 -26 238 270 220 0 chr3 64589392 64589492 -162935086 + MIR SINE MIR 129 250 -12 234 366 12 0 chr3 64590069 64590151 -162934427 - L2 LINE L2 -20 3252 3170 329 229 76 59 chr3 64590268 64590386 -162934192 + L2 LINE L2 3159 3278 -35 935 273 12 24 chr3 64590784 64591033 -162933545 - MIR SINE MIR -16 246 1 341 280 89 25 chr3 64591249 64591406 -162933172 + MER117 DNA MER1_type 5 171 -26 241 270 220 0 chr3 64591531 64591631 -162932947 + MIR SINE MIR 129 250 -12 2377 106 0 0 chr3 64592726 64593037 -162931541 + AluSq SINE Alu 1 311 -2 475 237 40 49 chr3 64593554 64593783 -162930795 - MIR SINE MIR -17 245 17 2223 103 0 0 chr3 64593885 64594196 -162930382 + AluSx SINE Alu 1 311 0 244 253 80 13 chr3 64594290 64594365 -162930213 + MIR SINE MIR 52 131 -131 * 437 193 11 23 chr3 64594353 64594441 -162930137 - L2 LINE L2 -1 3312 3226 210 305 105 11 chr3 64594460 64594555 -162930023 + MIR SINE MIR 159 262 0 24 32 0 0 chr3 64595274 64595305 -162929273 + AT_rich Low_complexity Low_complexity 1 31 0 788 162 0 0 chr3 64595305 64595422 -162929156 - FLAM_C SINE Alu -25 118 2 881 314 13 0 chr3 64595666 64595895 -162928683 + MIR SINE MIR 29 260 -2 349 26 0 0 chr3 64596938 64596977 -162927601 - HERV9 LTR ERV1 -3807 4592 4554 2214 95 3 7 chr3 64597776 64598071 -162926507 - AluSx SINE Alu -18 294 1 2423 90 0 0 chr3 64598727 64599026 -162925552 + AluSx SINE Alu 1 299 -13 1829 145 0 43 chr3 64599185 64599509 -162925069 + AluJo SINE Alu 1 310 -2 21 57 0 0 chr3 64599526 64599561 -162925017 + AT_rich Low_complexity Low_complexity 1 35 0 1106 232 9 14 chr3 64599616 64599836 -162924742 + MER20 DNA MER1_type 1 219 0 30 36 0 18 chr3 64600576 64600607 -162923971 + AT_rich Low_complexity Low_complexity 1 32 -22 2110 131 16 0 chr3 64600607 64600913 -162923665 - AluSx SINE Alu -1 311 1 30 36 0 18 chr3 64600913 64600936 -162923642 + AT_rich Low_complexity Low_complexity 32 54 0 409 217 137 19 chr3 64601086 64601147 -162923431 - MER104 DNA MER2_type -1718 180 128 1521 167 67 4 chr3 64601147 64601443 -162923135 + AluJb SINE Alu 1 313 0 409 217 137 19 chr3 64601443 64601539 -162923039 - MER104 DNA MER2_type -1770 128 1 204 371 11 34 chr3 64601644 64601733 -162922845 + MER5A DNA MER1_type 48 134 -55 222 232 36 18 chr3 64601929 64601985 -162922593 - L2 LINE L2 0 3272 3216 240 191 34 79 chr3 64602162 64602251 -162922327 + L3 LINE CR1 830 914 -663 542 257 126 42 chr3 64602730 64602991 -162921587 + L2 LINE L2 2985 3267 -5 1690 86 45 9 chr3 64605077 64605299 -162919279 - MER30 DNA MER1_type 0 230 1 383 319 17 0 chr3 64605299 64605415 -162919163 + MIR SINE MIR 31 148 -114 290 324 41 48 chr3 64605689 64605732 -162918846 + MIR3 SINE MIR 8 50 -158 1839 156 0 52 chr3 64605732 64606058 -162918520 + AluJo SINE Alu 1 309 -3 290 324 41 48 chr3 64606058 64606159 -162918419 + MIR3 SINE MIR 50 151 -57 1735 199 0 3 chr3 64606817 64607118 -162917460 + AluJo SINE Alu 1 300 -12 331 309 111 8 chr3 64607341 64607467 -162917111 + L2 LINE L2 3116 3254 -18 850 240 82 0 chr3 64607485 64607681 -162916897 - MIR SINE MIR -22 240 29 406 213 43 0 chr3 64608030 64608124 -162916454 + MIR SINE MIR 95 192 -70 713 271 92 9 chr3 64608479 64608697 -162915881 - MIR SINE MIR -23 239 4 296 298 50 16 chr3 64608769 64608890 -162915688 + MIR3 SINE MIR 3 127 -81 188 280 20 0 chr3 64609068 64609118 -162915460 + L3 LINE CR1 1525 1575 -2 301 224 30 0 chr3 64610036 64610103 -162914475 + L2 LINE L2 3244 3312 -1 182 360 25 62 chr3 64610208 64610369 -162914209 + L2 LINE L2 2956 3110 -162 1988 134 7 36 chr3 64610397 64610704 -162913874 - AluJo SINE Alu -12 300 3 1801 168 32 0 chr3 64610710 64610995 -162913583 - AluJb SINE Alu -18 294 1 542 243 71 131 chr3 64611202 64611408 -162913170 + L1MC5 LINE L1 7320 7537 -424 777 206 8 8 chr3 64611408 64611539 -162913039 + FLAM_A SINE Alu 1 131 -2 542 243 71 131 chr3 64611539 64611764 -162912814 + L1MC5 LINE L1 7537 7705 -256 1654 121 49 69 chr3 64611764 64612070 -162912508 + AluJb SINE Alu 9 308 -4 542 243 71 131 chr3 64612070 64612255 -162912323 + L1MC5 LINE L1 7705 7900 -61 1983 109 3 18 chr3 64612580 64612848 -162911730 + AluSx SINE Alu 14 279 -33 711 54 0 0 chr3 64612848 64612940 -162911638 + (GAGAA)n Simple_repeat Simple_repeat 1 92 0 1983 109 3 18 chr3 64612940 64612956 -162911622 + AluSx SINE Alu 279 294 -18 537 263 201 6 chr3 64613031 64613210 -162911368 - MIR SINE MIR -28 234 21 1808 149 42 3 chr3 64613464 64613752 -162910826 + AluSx SINE Alu 1 299 -13 205 279 0 0 chr3 64614929 64614990 -162909588 + A-rich Low_complexity Low_complexity 1 61 0 459 339 82 5 chr3 64615381 64615576 -162909002 - MIR SINE MIR -40 222 13 759 302 22 4 chr3 64615981 64616213 -162908365 + MIR SINE MIR 17 252 -10 1288 289 69 56 chr3 64616761 64617328 -162907250 + MLT1K LTR MaLR 15 588 0 24 0 0 0 chr3 64617904 64617928 -162906650 + AT_rich Low_complexity Low_complexity 1 24 0 806 234 120 41 chr3 64619600 64619916 -162904662 - MER102b DNA MER1_type 0 341 1 485 287 26 46 chr3 64620313 64620508 -162904070 - MIR SINE MIR -49 213 23 188 279 49 16 chr3 64621237 64621298 -162903280 - L3 LINE CR1 -7 1570 1508 2593 62 0 10 chr3 64621361 64621668 -162902910 + AluY SINE Alu 1 304 -7 743 170 7 22 chr3 64621674 64621809 -162902769 + FLAM_C SINE Alu 1 133 0 385 250 19 46 chr3 64623313 64623421 -162901157 + MIR SINE MIR 45 149 -113 1915 126 47 0 chr3 64623495 64623615 -162900963 + AluSx SINE Alu 3 116 -196 459 0 0 0 chr3 64623615 64623666 -162900912 + (TA)n Simple_repeat Simple_repeat 2 52 0 1915 126 47 0 chr3 64623666 64623822 -162900756 + AluSx SINE Alu 116 292 -20 21 0 0 0 chr3 64623896 64623917 -162900661 + AT_rich Low_complexity Low_complexity 1 21 0 4191 71 39 0 chr3 64624983 64625516 -162899062 - MER41A LTR ERV1 0 554 1 889 239 159 58 chr3 64625540 64625975 -162898603 + LTR67 LTR ERVL 33 511 -46 561 269 107 5 chr3 64626138 64626335 -162898243 - MIR SINE MIR 0 262 46 877 259 35 0 chr3 64627630 64627858 -162896720 + MIR SINE MIR 2 237 -25 29 70 0 0 chr3 64628028 64628085 -162896493 + AT_rich Low_complexity Low_complexity 1 57 0 309 336 21 7 chr3 64628268 64628356 -162896222 + MIR SINE MIR 25 117 -145 207 0 0 0 chr3 64628356 64628379 -162896199 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 309 336 21 7 chr3 64628379 64628433 -162896145 + MIR SINE MIR 117 169 -93 382 291 50 17 chr3 64628435 64628614 -162895964 - MIR SINE MIR -32 230 46 370 270 157 19 chr3 64628801 64628960 -162895618 - MIR SINE MIR -15 247 67 434 253 171 6 chr3 64630036 64630194 -162894384 - MER5A DNA MER1_type -1 188 5 2302 129 0 0 chr3 64631883 64632192 -162892386 + AluJb SINE Alu 1 309 -3 274 269 92 8 chr3 64632832 64632962 -162891616 - L1ME4a LINE L1 -13 6108 5968 694 294 82 22 chr3 64632984 64633386 -162891192 - L1ME4a LINE L1 -204 5917 5492 1695 162 6 29 chr3 64633990 64634305 -162890273 - AluJb SINE Alu 0 312 5 2126 144 29 27 chr3 64634366 64634740 -162889838 + THE1C LTR MaLR 1 375 0 4294 122 15 126 chr3 64634871 64636421 -162888157 + pTR5 LTR ERV1 741 2606 0 428 256 165 0 chr3 64636421 64636597 -162887981 - MIR SINE MIR -26 236 32 253 270 117 9 chr3 64637087 64637198 -162887380 + L1MC4 LINE L1 7373 7495 -547 1504 146 0 38 chr3 64737516 64737831 -162786747 + L1 LINE L1 3488 3790 -2356 2312 94 3 7 chr3 64737831 64738138 -162786440 + AluSq SINE Alu 1 306 -7 1121 190 44 4 chr3 64738138 64738412 -162786166 + L1 LINE L1 5005 5289 -857 2409 103 55 3 chr3 64738412 64738791 -162785787 + MSTA LTR MaLR 1 399 -29 797 192 0 0 chr3 64738810 64738940 -162785638 - FLAM_C SINE Alu 0 133 4 542 82 0 31 chr3 64738979 64739076 -162785502 + L1MA2 LINE L1 5285 5378 -927 1747 132 0 4 chr3 64739076 64739334 -162785244 + AluSx SINE Alu 54 310 -2 2178 95 17 0 chr3 64739336 64739630 -162784948 + AluSc SINE Alu 1 299 -10 249 105 0 0 chr3 64739630 64739668 -162784910 + L1MA2 LINE L1 5727 5764 -541 411 100 0 0 chr3 64739668 64739728 -162784850 + MER41A LTR ERV1 399 458 -96 2980 87 41 71 chr3 64739763 64740095 -162784483 + L1MA2 LINE L1 5756 6066 -238 2268 113 3 3 chr3 64740095 64740404 -162784174 + AluSx SINE Alu 1 309 -3 2980 87 41 71 chr3 64740404 64740637 -162783941 + L1MA2 LINE L1 6066 6304 0 205 333 28 37 chr3 64740718 64740826 -162783752 + L3 LINE CR1 1467 1573 -4 * 419 274 18 9 chr3 64740820 64740933 -162783645 - L2 LINE L2 -2 3311 3198 216 67 0 0 chr3 64740977 64741007 -162783571 + (T)n Simple_repeat Simple_repeat 1 30 0 552 218 318 23 chr3 64741763 64741983 -162782595 - L2 LINE L2 -15 3298 3014 40 49 0 0 chr3 64742447 64742508 -162782070 + AT_rich Low_complexity Low_complexity 1 61 0 1794 183 3 3 chr3 64742756 64743057 -162781521 - AluJb SINE Alu -11 301 1 238 314 93 0 chr3 64743244 64743330 -162781248 - L2 LINE L2 -7 3265 3172 2182 144 0 0 chr3 64743904 64744216 -162780362 - AluSx SINE Alu 0 312 1 2187 104 3 0 chr3 64744264 64744552 -162780026 - AluSq SINE Alu -24 289 1 913 207 15 88 chr3 64744578 64744643 -162779935 + L1MC/D LINE L1 4798 4866 -1280 833 138 0 8 chr3 64744643 64744773 -162779805 - FLAM_A SINE Alu -1 132 4 913 207 15 88 chr3 64744773 64745050 -162779528 + L1MC/D LINE L1 4866 5115 -1031 1105 72 0 0 chr3 64745064 64745202 -162779376 - AluSg/x SINE Alu 0 310 173 842 230 0 0 chr3 64745215 64745419 -162779159 + L1MC/D LINE L1 5127 5330 -816 2383 66 7 0 chr3 64745421 64745725 -162778853 + AluY SINE Alu 4 309 -2 1915 103 78 0 chr3 64745767 64746049 -162778529 + AluSq SINE Alu 1 304 -9 853 168 10 0 chr3 64746920 64747093 -162777485 + L1MC/D LINE L1 5310 5489 -721 199 355 97 7 chr3 64747314 64747469 -162777109 + L2 LINE L2 2323 2491 -823 2133 136 0 13 chr3 64747599 64747915 -162776663 - AluSx SINE Alu 0 312 1 1634 174 3 25 chr3 64748077 64748393 -162776185 - AluJb SINE Alu -3 309 1 1209 308 50 47 chr3 64748752 64749725 -162774853 - L2 LINE L2 0 3313 2344 2214 117 0 0 chr3 64749796 64750104 -162774474 + AluSg SINE Alu 1 308 -2 450 198 18 9 chr3 64750230 64750341 -162774237 - L1MD3 LINE L1 -2 7993 7882 * 4578 207 100 55 chr3 64750336 64750541 -162774037 - L1MC4a LINE L1 -677 7131 6937 992 150 0 0 chr3 64750541 64750694 -162773884 - FRAM SINE Alu -13 153 1 4578 207 100 55 chr3 64750694 64751736 -162772842 - L1MC4a LINE L1 -871 6937 5780 2494 87 0 0 chr3 64751736 64752046 -162772532 - AluSx SINE Alu -2 310 1 4578 207 100 55 chr3 64752046 64752552 -162772026 - L1MC4a LINE L1 -2028 5780 5298 447 73 59 0 chr3 64752573 64752641 -162771937 - L1MB2 LINE L1 -7 6164 6093 4516 73 0 18 chr3 64752678 64753006 -162771572 - L1PA8A LINE L1 -27 6104 5791 2315 92 3 7 chr3 64753006 64753301 -162771277 - AluSg1 SINE Alu -15 294 1 4516 73 0 18 chr3 64753301 64753602 -162770976 - L1PA8A LINE L1 -340 5791 5486 829 75 9 0 chr3 64753602 64753708 -162770870 - U6 snRNA snRNA 0 107 1 1431 151 32 0 chr3 64753709 64753960 -162770618 - L1MB2 LINE L1 -66 6105 5847 656 285 85 35 chr3 64753987 64754672 -162769906 - L1MC4a LINE L1 -895 5251 4533 434 198 12 12 chr3 64754771 64754852 -162769726 + L2 LINE L2 3190 3270 -43 1755 166 16 3 chr3 64755497 64755805 -162768773 - AluJb SINE Alu 0 312 1 1279 105 102 77 chr3 64756055 64756272 -162768306 - L1MA8 LINE L1 -2 6289 6060 2456 100 0 0 chr3 64756272 64756583 -162767995 - AluSx SINE Alu -1 311 1 1279 105 102 77 chr3 64756583 64756678 -162767900 - L1MA8 LINE L1 -231 6060 5969 2279 120 0 3 chr3 64757948 64758257 -162766321 - AluSg SINE Alu -2 308 1 24 77 0 0 chr3 64758532 64758584 -162765994 + AT_rich Low_complexity Low_complexity 1 52 0 24 77 0 0 chr3 64758610 64758662 -162765916 + AT_rich Low_complexity Low_complexity 1 52 0 22 35 0 0 chr3 64758969 64758998 -162765580 + AT_rich Low_complexity Low_complexity 1 29 0 401 189 79 102 chr3 64759375 64759423 -162765155 + MER63 DNA MER1_type 1 49 -787 1998 146 0 7 chr3 64759423 64759763 -162764815 + AluSx SINE Alu 1 312 0 401 189 79 102 chr3 64759763 64759841 -162764737 + MER63 DNA MER1_type 49 750 -86 378 244 24 0 chr3 64759843 64759925 -162764653 + MER63 DNA MER1_type 977 1060 0 1913 139 0 30 chr3 64760119 64760422 -162764156 + AluJo SINE Alu 1 294 -18 2325 108 0 0 chr3 64760424 64760730 -162763848 + AluSx SINE Alu 1 306 -6 852 58 17 116 chr3 64760803 64760976 -162763602 + L1MA3 LINE L1 5912 6067 -238 609 144 0 0 chr3 64760976 64761066 -162763512 + AluS SINE Alu 1 90 -223 2061 123 3 3 chr3 64761270 64761562 -162763016 + AluSq SINE Alu 1 292 -21 21 36 0 0 chr3 64761562 64761590 -162762988 + AT_rich Low_complexity Low_complexity 1 28 0 864 266 22 48 chr3 64761590 64762049 -162762529 - L1MC4a LINE L1 -1861 4285 3839 271 121 35 0 chr3 64762140 64762198 -162762380 + (TA)n Simple_repeat Simple_repeat 1 60 0 2301 99 3 0 chr3 64762368 64762662 -162761916 - AluSx SINE Alu -17 295 1 31 26 0 0 chr3 64762813 64762851 -162761727 + AT_rich Low_complexity Low_complexity 1 38 0 336 291 103 0 chr3 64763581 64763698 -162760880 - MIR SINE MIR -50 212 84 264 330 209 14 chr3 64763792 64764007 -162760571 + MIR SINE MIR 6 262 0 275 186 31 21 chr3 64764509 64764606 -162759972 + (TA)n Simple_repeat Simple_repeat 1 98 0 730 84 0 28 chr3 64764606 64764713 -162759865 - AluJb SINE Alu -124 188 85 1870 124 0 0 chr3 64764860 64765117 -162759461 + AluSx SINE Alu 1 257 -55 22 56 0 0 chr3 64765464 64765500 -162759078 + AT_rich Low_complexity Low_complexity 1 36 0 508 189 0 19 chr3 64765616 64765722 -162758856 + U13 snRNA snRNA 1 104 0 23 0 0 0 chr3 64765724 64765747 -162758831 + AT_rich Low_complexity Low_complexity 1 23 0 5002 97 15 19 chr3 64765874 64766626 -162757952 - L1PA16 LINE L1 -9 6157 5409 350 322 14 35 chr3 64766713 64766856 -162757722 + MIR3 SINE MIR 54 193 -15 26 30 0 0 chr3 64767132 64767165 -162757413 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr3 64767231 64767255 -162757323 + AT_rich Low_complexity Low_complexity 1 24 0 1685 155 59 0 chr3 64767255 64767526 -162757052 - AluJo SINE Alu -25 287 1 473 163 100 0 chr3 64767535 64767615 -162756963 - FRAM SINE Alu -26 150 63 230 143 0 0 chr3 64767646 64767681 -162756897 + MLT1K LTR MaLR 541 575 -13 1936 117 10 40 chr3 64768445 64768743 -162755835 + AluSx SINE Alu 1 289 -23 1596 148 22 47 chr3 64768833 64769110 -162755468 + AluJo SINE Alu 22 291 -21 397 301 49 0 chr3 64769187 64769310 -162755268 + MIR SINE MIR 28 156 -106 305 266 79 37 chr3 64769518 64769759 -162754819 - L1MC4a LINE L1 -1759 6049 5799 225 0 0 0 chr3 64769773 64769798 -162754780 + (TG)n Simple_repeat Simple_repeat 1 25 0 474 282 135 46 chr3 64769912 64770272 -162754306 - L1MC4a LINE L1 -745 5401 5100 628 255 52 8 chr3 64770339 64770590 -162753988 - L1MC4a LINE L1 -2391 3755 3494 239 333 0 81 chr3 64770629 64770875 -162753703 - MLT1I LTR MaLR -77 332 107 621 266 54 4 chr3 64770910 64771151 -162753427 - L1MC4a LINE L1 -2663 3483 3231 4070 153 57 12 chr3 64771158 64771930 -162752648 - L1M3f LINE L1 -4378 950 144 1012 128 0 0 chr3 64771954 64772095 -162752483 + AluSg/x SINE Alu 156 296 -16 210 225 0 0 chr3 64772129 64772169 -162752409 - L2 LINE L2 -1 3271 3232 24 32 0 0 chr3 64772294 64772325 -162752253 + AT_rich Low_complexity Low_complexity 1 31 0 419 129 86 0 chr3 64772369 64772439 -162752139 + AluS SINE Alu 1 76 -235 879 212 0 18 chr3 64772574 64772739 -162751839 - AluJo SINE Alu -4 298 137 2185 113 0 0 chr3 64773315 64773625 -162750953 + AluSq SINE Alu 1 310 0 21 89 0 0 chr3 64774513 64774569 -162750009 + AT_rich Low_complexity Low_complexity 1 56 0 777 313 15 0 chr3 64774931 64775129 -162749449 - MIR SINE MIR -28 234 34 1293 153 9 22 chr3 64775559 64775781 -162748797 - MER20 DNA MER1_type 0 219 1 22 35 0 0 chr3 64775980 64776009 -162748569 + AT_rich Low_complexity Low_complexity 1 29 0 238 190 13 13 chr3 64776344 64776423 -162748155 - L1ME4a LINE L1 -1 6120 6042 182 128 26 0 chr3 64776586 64776625 -162747953 + GA-rich Low_complexity Low_complexity 1 40 0 1393 198 96 10 chr3 64776982 64777295 -162747283 - MER58B DNA MER1_type 0 341 2 800 270 87 114 chr3 64778389 64779176 -162745402 - L2 LINE L2 -213 3059 2292 1931 116 7 21 chr3 64780271 64780583 -162743995 - AluSx SINE Alu 0 308 1 22 0 0 0 chr3 64780607 64780629 -162743949 + AT_rich Low_complexity Low_complexity 1 22 0 33 43 0 0 chr3 64780773 64780820 -162743758 + AT_rich Low_complexity Low_complexity 1 47 0 808 200 0 0 chr3 64781149 64781279 -162743299 - AluJo SINE Alu -182 130 1 2179 114 3 0 chr3 64781371 64781668 -162742910 - AluSp SINE Alu -15 298 1 186 43 0 0 chr3 64781732 64781755 -162742823 + (TG)n Simple_repeat Simple_repeat 2 24 0 1394 175 7 62 chr3 64781758 64781994 -162742584 - AluJo SINE Alu -30 282 63 1948 118 35 3 chr3 64781994 64782281 -162742297 + AluSx SINE Alu 2 297 -15 1394 175 7 62 chr3 64782281 64782336 -162742242 - AluJo SINE Alu -249 63 7 790 79 71 29 chr3 64783506 64783646 -162740932 + MER53 DNA DNA 2 147 -42 1439 151 90 7 chr3 64783688 64783967 -162740611 - MER50 LTR ERV1 0 734 433 1355 128 8 13 chr3 64783965 64784200 -162740378 - MER50 LTR ERV1 -500 234 1 * 1952 133 0 25 chr3 64784203 64784518 -162740060 - AluJb SINE Alu -5 307 1 428 50 17 0 chr3 64784519 64784579 -162739999 - MER53 DNA DNA -128 61 1 1094 269 95 21 chr3 64784648 64785068 -162739510 - LTR16A1 LTR ERVL 0 457 7 283 263 189 0 chr3 64785107 64785202 -162739376 + L2 LINE L2 3160 3272 0 2181 104 3 0 chr3 64785313 64785600 -162738978 - AluSp SINE Alu -25 288 1 2194 105 7 10 chr3 64785603 64785897 -162738681 - AluSx SINE Alu -15 297 5 6489 133 68 122 chr3 64785956 64787749 -162736829 + pTR5 LTR ERV1 743 2438 0 1700 191 3 3 chr3 64787892 64788190 -162736388 + AluJo SINE Alu 1 298 -14 25 51 0 0 chr3 64788241 64788280 -162736298 + AT_rich Low_complexity Low_complexity 1 39 0 244 113 57 38 chr3 64788298 64788351 -162736227 - L1MC1 LINE L1 0 6333 6280 1443 133 9 4 chr3 64788455 64788681 -162735897 + AluSg/x SINE Alu 82 308 -4 1978 122 7 7 chr3 64788733 64789019 -162735559 + AluSx SINE Alu 1 286 -26 2508 78 0 0 chr3 64789388 64789695 -162734883 - AluY SINE Alu -4 307 1 838 204 192 21 chr3 64789938 64790178 -162734400 - AluSc SINE Alu -18 281 1 710 198 0 0 chr3 64791473 64791589 -162732989 + FLAM_C SINE Alu 1 116 -17 1743 131 50 34 chr3 64792098 64792396 -162732182 + AluSx SINE Alu 1 303 -9 1104 189 11 0 chr3 64792764 64792954 -162731624 - AluJb SINE Alu -8 304 113 2048 118 10 14 chr3 64792960 64793248 -162731330 + AluSp SINE Alu 1 287 -26 903 118 0 22 chr3 64793900 64794035 -162730543 + FLAM_C SINE Alu 6 137 -6 1957 131 32 0 chr3 64794151 64794434 -162730144 - AluJb SINE Alu -20 292 1 2086 75 108 7 chr3 64794522 64794801 -162729777 - AluSx SINE Alu -5 307 1 2258 107 0 7 chr3 64795289 64795588 -162728990 - AluSx SINE Alu -15 297 1 24 0 0 0 chr3 64795773 64795797 -162728781 + AT_rich Low_complexity Low_complexity 1 24 0 3103 155 96 6 chr3 64795809 64796494 -162728084 + L1MB8 LINE L1 5297 6043 -135 2243 69 10 17 chr3 64796783 64797090 -162727488 - AluSc SINE Alu 0 309 2 537 138 268 0 chr3 64797120 64797258 -162727320 + L1MA3 LINE L1 6123 6297 -8 24 32 0 0 chr3 64797295 64797326 -162727252 + AT_rich Low_complexity Low_complexity 1 31 0 1955 143 7 17 chr3 64797327 64797627 -162726951 + AluJo SINE Alu 1 297 -15 1721 159 0 51 chr3 64797635 64797949 -162726629 + AluJb SINE Alu 1 298 -14 24 0 0 0 chr3 64798363 64798387 -162726191 + AT_rich Low_complexity Low_complexity 1 24 0 1083 103 0 0 chr3 64798387 64798523 -162726055 + AluSq/x SINE Alu 1 136 -177 1805 153 14 14 chr3 64798723 64799011 -162725567 - AluJb SINE Alu -24 288 1 1227 45 0 0 chr3 64799110 64799264 -162725314 + L1PA6 LINE L1 6001 6154 0 838 164 15 15 chr3 64799299 64799433 -162725145 + FRAM SINE Alu 20 153 -23 2469 90 0 0 chr3 64801990 64802302 -162722276 + AluSq SINE Alu 1 312 -1 2169 112 3 3 chr3 64803866 64804161 -162720417 + AluSx SINE Alu 1 295 -17 1681 178 3 54 chr3 64804353 64804530 -162720048 - AluJo SINE Alu -14 298 142 261 0 0 0 chr3 64804530 64804559 -162720019 + (TA)n Simple_repeat Simple_repeat 2 30 0 1681 178 3 54 chr3 64804559 64804695 -162719883 - AluJo SINE Alu -170 142 1 2093 186 45 79 chr3 64804828 64805191 -162719387 - L1ME1 LINE L1 -9 6157 5820 2343 94 0 0 chr3 64805191 64805489 -162719089 - AluY SINE Alu -13 298 1 2093 186 45 79 chr3 64805489 64805722 -162718856 - L1ME1 LINE L1 -346 5820 5581 1005 189 0 12 chr3 64805725 64805889 -162718689 + FRAM SINE Alu 1 161 -15 619 162 70 95 chr3 64805897 64806238 -162718340 - L1ME1 LINE L1 -679 5487 5281 793 251 23 4 chr3 64806276 64806535 -162718043 - L1ME1 LINE L1 -852 5294 5031 2556 218 18 11 chr3 64806566 64807223 -162717355 - L1ME1 LINE L1 -1104 5042 4381 2346 102 0 0 chr3 64807225 64807520 -162717058 - AluSp SINE Alu -18 295 1 986 262 15 9 chr3 64807548 64807872 -162716706 - L1ME1 LINE L1 -2016 4130 3805 863 228 56 9 chr3 64807876 64808109 -162716469 - MLT1F1 LTR MaLR -28 539 296 263 240 31 21 chr3 64808113 64808209 -162716369 - L1 LINE L1 -3677 2469 2373 21 0 0 0 chr3 64808209 64808230 -162716348 + AT_rich Low_complexity Low_complexity 1 21 0 283 159 45 6 chr3 64808241 64808398 -162716180 + (TA)n Simple_repeat Simple_repeat 1 163 0 223 145 29 0 chr3 64808414 64808483 -162716095 + (TA)n Simple_repeat Simple_repeat 2 72 0 249 145 40 0 chr3 64808541 64808617 -162715961 + (TA)n Simple_repeat Simple_repeat 2 80 0 1867 111 0 79 chr3 64808617 64808932 -162715646 - AluSq SINE Alu -23 290 1 581 203 0 0 chr3 64809054 64809187 -162715391 - L1ME1 LINE L1 -3639 2507 2375 1964 167 0 0 chr3 64809189 64809482 -162715096 - AluJb SINE Alu -19 293 1 974 197 91 23 chr3 64809484 64809604 -162714974 - L1M4 LINE L1 -1905 4241 4131 1733 172 0 31 chr3 64809604 64809938 -162714640 - AluJb SINE Alu 0 325 1 974 197 91 23 chr3 64809938 64809952 -162714626 - L1M4 LINE L1 -2015 4131 4119 1737 176 4 0 chr3 64809952 64810248 -162714330 - AluJb SINE Alu 0 307 11 974 197 91 23 chr3 64810248 64810419 -162714159 - L1M4 LINE L1 -2027 4119 3912 661 120 9 19 chr3 64810432 64810540 -162714038 - HY1 scRNA scRNA -3 109 3 1191 192 119 16 chr3 64810693 64811005 -162713573 + MER2 DNA MER2_type 2 345 0 1996 125 11 0 chr3 64811172 64811482 -162713096 - AluY SINE Alu 0 313 1 2161 99 3 0 chr3 64811715 64812030 -162712548 - AluSp SINE Alu 0 316 1 932 186 26 0 chr3 64812035 64812191 -162712387 - FRAM SINE Alu -4 162 3 1375 146 29 0 chr3 64812196 64812401 -162712177 - AluJb SINE Alu -17 295 85 23 0 0 0 chr3 64812406 64812429 -162712149 + AT_rich Low_complexity Low_complexity 1 23 0 804 148 0 23 chr3 64812429 64812557 -162712021 - FLAM_C SINE Alu -18 125 1 404 248 8 0 chr3 64812559 64812684 -162711894 + L1MC5 LINE L1 7736 7861 -100 260 243 112 0 chr3 64812955 64813062 -162711516 - L1ME3A LINE L1 -208 5962 5844 2233 106 23 0 chr3 64813100 64813402 -162711176 - AluSx SINE Alu -3 309 1 856 177 7 14 chr3 64813878 64814025 -162710553 - AluJo SINE Alu -31 281 136 22 0 0 0 chr3 64814236 64814258 -162710320 + AT_rich Low_complexity Low_complexity 1 22 0 270 237 51 0 chr3 64815048 64815107 -162709471 + MIR SINE MIR 119 180 -82 367 291 127 46 chr3 64815115 64815233 -162709345 + Charlie8 DNA MER1_type 7 114 -227 258 105 0 0 chr3 64815233 64815271 -162709307 + (CA)n Simple_repeat Simple_repeat 2 39 0 367 291 127 46 chr3 64815271 64815389 -162709189 + Charlie8 DNA MER1_type 114 262 -79 360 203 89 0 chr3 64815472 64815551 -162709027 + MIR SINE MIR 176 261 -1 546 280 35 86 chr3 64815566 64815720 -162708858 + MIR SINE MIR 8 145 -117 2345 85 0 3 chr3 64815720 64816027 -162708551 + AluSg SINE Alu 4 309 -1 546 280 35 86 chr3 64816027 64816129 -162708449 + MIR SINE MIR 145 251 -11 206 118 0 0 chr3 64816305 64816339 -162708239 + (A)n Simple_repeat Simple_repeat 1 34 0 560 191 33 7 chr3 64816772 64816924 -162707654 + CT-rich Low_complexity Low_complexity 3 158 0 884 147 0 0 chr3 64816926 64817055 -162707523 - AluJo SINE Alu -173 129 1 542 345 42 26 chr3 64817109 64817373 -162707205 + L2 LINE L2 2863 3130 -183 619 194 0 0 chr3 64817373 64817481 -162707097 - FRAM SINE Alu -14 162 55 336 246 177 31 chr3 64817511 64817641 -162706937 + L2 LINE L2 3165 3313 0 724 190 0 0 chr3 64817799 64817920 -162706658 - AluJb SINE Alu -189 123 3 32 26 0 0 chr3 64817925 64817964 -162706614 + AT_rich Low_complexity Low_complexity 1 39 0 296 94 38 0 chr3 64817964 64818017 -162706561 - L1PB2 LINE L1 -7 6144 6090 1571 129 4 26 chr3 64818038 64818271 -162706307 - AluSx SINE Alu -83 229 2 296 68 23 0 chr3 64818274 64818318 -162706260 - L1PB1 LINE L1 -52 6099 6055 1865 115 4 4 chr3 64818421 64818674 -162705904 - AluSq SINE Alu -60 253 1 4848 186 9 2 chr3 64818674 64819709 -162704869 - L1 LINE L1 -2356 5209 4168 477 79 11 22 chr3 64819765 64819854 -162704724 - L1 LINE L1 -4287 3278 3191 13686 129 26 20 chr3 64820553 64821055 -162703523 - L1 LINE L1 -4362 3203 2705 2145 119 3 22 chr3 64821055 64821367 -162703211 + AluSx SINE Alu 1 306 -6 13686 129 26 20 chr3 64821367 64824044 -162700534 - L1 LINE L1 -4860 2705 3 223 221 191 73 chr3 64824051 64824086 -162700492 - L3 LINE CR1 -148 1429 1400 2126 133 3 0 chr3 64824086 64824386 -162700192 - AluSx SINE Alu -11 301 1 223 221 191 73 chr3 64824386 64824486 -162700092 - L3 LINE CR1 -177 1400 1278 632 294 70 5 chr3 64824534 64824748 -162699830 - MIR SINE MIR -14 248 21 1644 171 106 80 chr3 64824791 64825097 -162699481 + MSTD LTR MaLR 1 298 -98 206 31 0 31 chr3 64825097 64825129 -162699449 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 2378 71 3 0 chr3 64825132 64825415 -162699163 - AluSp SINE Alu -25 288 5 2248 105 3 0 chr3 64825418 64825712 -162698866 - AluSg SINE Alu -15 295 1 1644 171 106 80 chr3 64825712 64825783 -162698795 + MSTD LTR MaLR 300 396 0 703 165 0 0 chr3 64825833 64825936 -162698642 - U6 snRNA snRNA -4 103 1 692 243 104 5 chr3 64825936 64826138 -162698440 - L3 LINE CR1 -463 1114 893 1792 127 73 4 chr3 64826508 64826783 -162697795 + AluJb SINE Alu 1 294 -18 21 57 0 0 chr3 64826820 64826855 -162697723 + AT_rich Low_complexity Low_complexity 1 35 0 2469 71 0 0 chr3 64827266 64827560 -162697018 - AluSc SINE Alu -15 294 1 180 77 0 0 chr3 64828017 64828043 -162696535 + (TTCA)n Simple_repeat Simple_repeat 4 29 0 1454 305 107 60 chr3 64828163 64829179 -162695399 + L2 LINE L2 2025 2991 -322 2343 99 0 10 chr3 64829179 64829493 -162695085 - AluY SINE Alu 0 311 1 1454 305 107 60 chr3 64829493 64829627 -162694951 + L2 LINE L2 2991 3117 -196 2085 120 3 0 chr3 64829627 64829919 -162694659 - AluSx SINE Alu -10 302 10 1454 305 107 60 chr3 64829919 64829994 -162694584 + L2 LINE L2 3117 3308 -5 219 350 30 10 chr3 64830022 64830122 -162694456 - L2 LINE L2 -213 3059 2958 1978 151 3 3 chr3 64830225 64830524 -162694054 + AluJb SINE Alu 1 299 -13 2177 109 3 3 chr3 64830623 64830917 -162693661 - AluSx SINE Alu -18 294 1 1369 201 3 24 chr3 64830938 64831226 -162693352 - AluJo SINE Alu -13 299 18 21 0 0 0 chr3 64831420 64831441 -162693137 + AT_rich Low_complexity Low_complexity 1 21 0 755 241 96 6 chr3 64831908 64832074 -162692504 + MIR SINE MIR 6 186 -76 330 336 44 0 chr3 64832644 64832781 -162691797 + MIR3 SINE MIR 51 193 -15 2211 82 10 7 chr3 64832894 64833186 -162691392 - AluSx SINE Alu -6 306 14 5099 120 36 14 chr3 64833286 64833403 -162691175 - L1PB2 LINE L1 -170 5981 5868 2187 102 27 0 chr3 64833403 64833697 -162690881 + AluSg SINE Alu 1 302 -8 5099 120 36 14 chr3 64833697 64834685 -162689893 - L1PB2 LINE L1 -283 5868 4852 205 186 0 0 chr3 64834878 64834921 -162689657 + (TAA)n Simple_repeat Simple_repeat 1 43 0 2139 130 3 19 chr3 64835130 64835438 -162689140 - AluJb SINE Alu -9 303 1 233 316 51 0 chr3 64835843 64835922 -162688656 - L1ME3A LINE L1 -100 6070 5988 44976 40 1 0 chr3 64836017 64842163 -162682415 - L1PA4 LINE L1 0 6155 1 1081 261 117 67 chr3 64842354 64842515 -162682063 - L1ME3A LINE L1 -21 6149 5997 2414 92 0 0 chr3 64842515 64842818 -162681760 - AluSg SINE Alu -7 303 1 1081 261 117 67 chr3 64842818 64843529 -162681049 - L1ME3A LINE L1 -173 5997 5219 437 110 0 61 chr3 64843529 64843611 -162680967 - L1MB2 LINE L1 -11 6160 6084 1081 261 117 67 chr3 64843611 64843718 -162680860 - L1ME3A LINE L1 -951 5219 5119 306 106 0 0 chr3 64843732 64843779 -162680799 + (TTTC)n Simple_repeat Simple_repeat 4 50 0 379 271 73 28 chr3 64843807 64844025 -162680553 - L1ME3A LINE L1 -987 5159 4932 2409 69 0 0 chr3 64844352 64844643 -162679935 + AluSx SINE Alu 1 291 -21 264 51 77 0 chr3 64845528 64845567 -162679011 - L2 LINE L2 -4 3309 3268 23 0 0 0 chr3 64845575 64845598 -162678980 + AT_rich Low_complexity Low_complexity 1 23 0 198 245 20 0 chr3 64845619 64845668 -162678910 + L2 LINE L2 3264 3313 0 1930 99 58 51 chr3 64845749 64846041 -162678537 - AluSp SINE Alu -14 299 6 1567 157 3 82 chr3 64846113 64846178 -162678400 - AluJo SINE Alu -19 293 224 4872 132 42 51 chr3 64846178 64846979 -162677599 + LTR25 LTR ERV1 1 794 0 1567 157 3 82 chr3 64846979 64847231 -162677347 - AluJo SINE Alu -88 224 1 721 189 33 20 chr3 64847295 64847448 -162677130 + MLT1E3 LTR MaLR 51 205 -419 723 173 38 23 chr3 64847454 64847587 -162676991 + AluJb SINE Alu 2 136 -176 248 216 11 116 chr3 64847671 64847785 -162676793 + MLT2C1 LTR ERVL 268 357 -40 297 132 0 19 chr3 64847831 64847884 -162676694 + MLT2F LTR ERVL 612 663 0 2111 47 36 29 chr3 64848093 64848394 -162676184 + AluSc SINE Alu 1 303 0 399 318 76 33 chr3 64848474 64848685 -162675893 + MIR SINE MIR 23 242 -20 275 353 143 0 chr3 64848925 64849044 -162675534 + L2 LINE L2 3136 3271 -1 454 218 194 6 chr3 64851131 64851296 -162673282 - MIR SINE MIR -1 261 66 775 176 40 0 chr3 64851328 64851476 -162673102 - FRAM SINE Alu -13 163 10 298 162 44 0 chr3 64851517 64851585 -162672993 + MER53 DNA DNA 3 73 -116 1282 135 96 5 chr3 64851760 64851968 -162672610 - AluJb SINE Alu -85 227 1 428 148 0 0 chr3 64852209 64852270 -162672308 - AluS SINE Alu -256 62 2 2204 123 0 7 chr3 64852359 64852668 -162671910 - AluSx SINE Alu -5 307 1 23 0 0 0 chr3 64852670 64852693 -162671885 + AT_rich Low_complexity Low_complexity 1 23 0 993 192 0 18 chr3 64852693 64852860 -162671718 - FAM SINE Alu -11 164 1 408 154 0 39 chr3 64852862 64852940 -162671638 + LTR49-int LTR ERV1 4426 4500 -3620 737 148 0 9 chr3 64852956 64853064 -162671514 - U6 snRNA snRNA 0 107 1 3620 184 74 62 chr3 64853064 64853189 -162671389 + LTR49-int LTR ERV1 2864 2986 -3292 1642 182 14 3 chr3 64853189 64853475 -162671103 - AluJb SINE Alu -23 289 1 3620 184 74 62 chr3 64853475 64854428 -162670150 + LTR49-int LTR ERV1 2986 5063 -1215 837 160 0 60 chr3 64854445 64854595 -162669983 + FLAM_C SINE Alu 2 142 -1 270 0 0 0 chr3 64856179 64856209 -162668369 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2095 109 11 3 chr3 64856213 64856497 -162668081 - AluY SINE Alu -25 286 1 202 224 20 0 chr3 64857291 64857340 -162667238 + (GGGTG)n Simple_repeat Simple_repeat 2 51 0 405 227 55 9 chr3 64857716 64857826 -162666752 + AluSp SINE Alu 2 116 -197 1392 178 24 56 chr3 64858143 64858430 -162666148 + AluJo SINE Alu 1 278 -34 207 0 0 0 chr3 64858436 64858459 -162666119 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 469 100 67 11 chr3 64858480 64858570 -162666008 - LTR23-int LTR ERV1 -2471 2652 2558 1850 116 4 36 chr3 64858631 64858907 -162665671 - AluSx SINE Alu -12 300 34 2297 60 49 7 chr3 64858998 64859283 -162665295 - AluY SINE Alu -14 297 1 632 203 35 76 chr3 64859284 64859378 -162665200 - LTR23-int LTR ERV1 -2678 3653 3557 2170 56 11 11 chr3 64859378 64859688 -162664890 - AluY SINE Alu 0 310 1 632 203 35 76 chr3 64859688 64859915 -162664663 - LTR23-int LTR ERV1 -2774 3557 1921 1852 157 30 0 chr3 64860081 64860422 -162664156 + AluSc SINE Alu 1 350 0 1549 115 20 4 chr3 64860422 64860666 -162663912 + L1MA2 LINE L1 6057 6304 0 1157 120 6 0 chr3 64860689 64860847 -162663731 + FRAM SINE Alu 1 155 -21 262 148 0 37 chr3 64860848 64860902 -162663676 + L1MC4 LINE L1 6652 6703 -1339 657 143 0 0 chr3 64861580 64861678 -162662900 + AluSg SINE Alu 1 98 -212 2370 78 10 0 chr3 64862021 64862315 -162662263 - AluSg SINE Alu -13 297 1 956 114 8 0 chr3 64862318 64862450 -162662128 - AluSq/x SINE Alu -179 133 1 21 0 0 0 chr3 64862523 64862544 -162662034 + AT_rich Low_complexity Low_complexity 1 21 0 1087 185 0 0 chr3 64862577 64862756 -162661822 + FAM SINE Alu 1 43 0 180 0 0 0 chr3 64862840 64862860 -162661718 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 1312 162 66 0 chr3 64862865 64863137 -162661441 - AluSc SINE Alu -7 292 3 304 118 20 0 chr3 64863336 64863387 -162661191 + Alu SINE Alu 249 300 0 283 304 125 27 chr3 64863512 64863696 -162660882 + L2 LINE L2 2735 2936 -378 2353 93 0 3 chr3 64863696 64863996 -162660582 - AluSq SINE Alu -13 300 2 237 244 18 48 chr3 64864133 64864301 -162660277 + CT-rich Low_complexity Low_complexity 3 165 0 2268 89 7 3 chr3 64864438 64864730 -162659848 + AluSx SINE Alu 10 302 -10 767 161 15 0 chr3 64864732 64864869 -162659709 + LTR49-int LTR ERV1 3134 3272 -3059 709 176 12 193 chr3 64864922 64865166 -162659412 + LTR49-int LTR ERV1 3265 3464 -2867 2111 130 10 0 chr3 64865349 64865657 -162658921 - AluSp SINE Alu -2 311 1 624 136 70 2 chr3 64865881 64866022 -162658556 + L1MA9 LINE L1 6144 6290 -4 2340 105 0 0 chr3 64866169 64866473 -162658105 + AluSx SINE Alu 1 304 -8 1589 245 139 42 chr3 64866975 64867767 -162656811 - L1MEc LINE L1 -4215 2181 1313 1607 183 60 0 chr3 64867770 64868054 -162656524 - AluJo SINE Alu -11 301 1 4162 74 19 2 chr3 64868185 64868754 -162655824 - L1P LINE L1 -1571 4575 3997 21 0 0 0 chr3 64869184 64869205 -162655373 + AT_rich Low_complexity Low_complexity 1 21 0 2611 33 0 3 chr3 64869587 64869886 -162654692 - AluY SINE Alu -13 298 1 27 49 0 0 chr3 64870468 64870509 -162654069 + AT_rich Low_complexity Low_complexity 1 41 0 329 138 86 0 chr3 64871093 64871151 -162653427 - MLT1I LTR MaLR -53 356 294 420 230 40 20 chr3 64871524 64871624 -162652954 + MER69A DNA AcHobo 2 103 -74 231 235 25 12 chr3 64871661 64871742 -162652836 + (TATATG)n Simple_repeat Simple_repeat 5 86 0 240 274 0 14 chr3 64872014 64872087 -162652491 - L1MC5 LINE L1 -41 7920 7849 24 0 0 0 chr3 64872090 64872114 -162652464 + AT_rich Low_complexity Low_complexity 1 24 0 747 168 8 8 chr3 64872117 64872236 -162652342 - FLAM_A SINE Alu -13 120 2 2218 126 0 0 chr3 64872517 64872819 -162651759 - AluSx SINE Alu -6 306 5 22 0 0 0 chr3 64873302 64873324 -162651254 + AT_rich Low_complexity Low_complexity 1 22 0 900 278 81 30 chr3 64873369 64873739 -162650839 - MLT1I LTR MaLR -10 399 11 794 252 87 34 chr3 64874986 64875367 -162649211 - L1ME3 LINE L1 -2 6160 5760 2299 84 3 35 chr3 64875432 64875743 -162648835 + AluSx SINE Alu 1 301 -11 302 346 217 13 chr3 64875933 64876698 -162647880 - L2 LINE L2 -1828 1486 566 1022 164 40 30 chr3 64876838 64877039 -162647539 + MER3 DNA MER1_type 1 203 -6 472 262 47 17 chr3 64877379 64877612 -162646966 + L1MC5 LINE L1 7484 7723 -238 21 0 0 0 chr3 64877759 64877780 -162646798 + AT_rich Low_complexity Low_complexity 1 21 0 421 319 96 0 chr3 64877883 64878018 -162646560 - MIR SINE MIR -80 182 35 227 333 103 0 chr3 64878269 64878347 -162646231 - L2 LINE L2 -1 3271 3186 2408 78 3 0 chr3 64878436 64878732 -162645846 + AluSp SINE Alu 1 297 -16 1039 202 126 99 chr3 64879626 64879684 -162644894 - MLT1D LTR MaLR 0 505 450 2236 105 0 7 chr3 64879684 64879978 -162644600 + AluSx SINE Alu 4 295 -17 1039 202 126 99 chr3 64879978 64880188 -162644390 - MLT1D LTR MaLR -55 450 247 2102 113 0 41 chr3 64880188 64880507 -162644071 - AluSx SINE Alu -6 306 1 1039 202 126 99 chr3 64880507 64880722 -162643856 - MLT1D LTR MaLR -258 247 8 315 0 0 0 chr3 64880738 64880773 -162643805 + (CA)n Simple_repeat Simple_repeat 2 36 0 1634 127 74 63 chr3 64881063 64881362 -162643216 - AluSx SINE Alu -8 304 3 297 284 71 24 chr3 64881761 64881888 -162642690 + L2 LINE L2 2920 3052 -220 1353 167 31 98 chr3 64882343 64882661 -162641917 + AluJo SINE Alu 1 297 -15 22 0 0 0 chr3 64882912 64882934 -162641644 + AT_rich Low_complexity Low_complexity 1 22 0 2142 100 0 45 chr3 64883104 64883415 -162641163 - AluSg SINE Alu -12 298 2 2200 114 0 3 chr3 64883425 64883722 -162640856 - AluSx SINE Alu -14 298 3 1569 100 0 0 chr3 64883873 64884073 -162640505 + AluSq SINE Alu 1 200 -113 705 275 46 4 chr3 64884999 64885239 -162639339 - L1MC4a LINE L1 -1959 5849 5600 21 36 0 0 chr3 64885239 64885267 -162639311 + AT_rich Low_complexity Low_complexity 1 28 0 835 163 0 0 chr3 64885267 64885390 -162639188 - FLAM_C SINE Alu -20 123 1 1786 80 134 0 chr3 64885417 64885679 -162638899 + AluY SINE Alu 1 297 -4 1624 184 3 26 chr3 64885698 64886008 -162638570 + AluJb SINE Alu 1 303 -9 37 76 0 0 chr3 64886548 64886627 -162637951 + AT_rich Low_complexity Low_complexity 1 79 0 524 209 103 76 chr3 64886878 64886972 -162637606 + HAL1 LINE L1 2238 2328 -179 2541 71 0 0 chr3 64886972 64887283 -162637295 - AluY SINE Alu 0 311 1 524 209 103 76 chr3 64887283 64887451 -162637127 + HAL1 LINE L1 2328 2507 0 26 50 0 0 chr3 64888147 64888187 -162636391 + AT_rich Low_complexity Low_complexity 1 40 0 1608 146 76 38 chr3 64889353 64889641 -162634937 - AluJb SINE Alu -12 300 2 1183 164 121 123 chr3 64889662 64889723 -162634855 - Charlie4a DNA MER1_type -1511 450 390 207 69 0 0 chr3 64889723 64889752 -162634826 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1183 164 121 123 chr3 64889752 64889767 -162634811 - Charlie4a DNA MER1_type -1571 390 376 1885 98 11 29 chr3 64889767 64890042 -162634536 - AluSx SINE Alu -42 270 1 1183 164 121 123 chr3 64890042 64890410 -162634168 - Charlie4a DNA MER1_type -1585 376 6 23 33 0 0 chr3 64890412 64890442 -162634136 + AT_rich Low_complexity Low_complexity 1 30 0 2238 101 3 10 chr3 64890636 64890942 -162633636 - AluSp SINE Alu -9 304 1 1796 162 0 26 chr3 64891519 64891821 -162632757 + AluJo SINE Alu 1 294 -18 2244 116 3 0 chr3 64891829 64892131 -162632447 + AluSx SINE Alu 7 309 -3 249 57 0 0 chr3 64892754 64892789 -162631789 + (CA)n Simple_repeat Simple_repeat 2 36 0 1394 123 23 5 chr3 64893306 64893525 -162631053 + L1PA15 LINE L1 5941 6163 -2 6094 190 29 17 chr3 64894328 64895681 -162628897 - L1MC1 LINE L1 -46 6287 4951 623 244 0 8 chr3 64895681 64895812 -162628766 - FLAM_A SINE Alu -3 130 1 6094 190 29 17 chr3 64895812 64896355 -162628223 - L1MC1 LINE L1 -1382 4951 4356 2378 103 3 0 chr3 64896355 64896665 -162627913 - AluSx SINE Alu -1 311 1 6094 190 29 17 chr3 64896665 64897076 -162627502 - L1MC1 LINE L1 -1977 4356 3951 2062 139 10 0 chr3 64897079 64897374 -162627204 - AluSx SINE Alu -14 298 1 2350 156 26 10 chr3 64897374 64897791 -162626787 - Tigger1 DNA MER2_type -1994 424 1 256 298 77 22 chr3 64898382 64898563 -162626015 - L1MC4a LINE L1 -1889 5919 5729 611 226 8 8 chr3 64898903 64899027 -162625551 + MER94 DNA DNA 11 134 0 401 294 69 44 chr3 64899762 64899922 -162624656 + MIR SINE MIR 20 183 -79 2320 99 0 0 chr3 64900714 64901008 -162623570 + AluSc SINE Alu 1 294 -15 2197 115 0 19 chr3 64901529 64901842 -162622736 - AluSx SINE Alu -5 307 1 24 77 0 0 chr3 64902692 64902744 -162621834 + AT_rich Low_complexity Low_complexity 1 52 0 2214 116 0 13 chr3 64903166 64903477 -162621101 - AluSx SINE Alu -5 307 1 787 305 114 8 chr3 64903542 64904052 -162620526 - L1ME3 LINE L1 -215 5947 5374 1884 202 62 5 chr3 64904951 64905367 -162619211 - L1MA4A LINE L1 -10 6293 5854 300 361 8 17 chr3 64905877 64905996 -162618582 + MIR SINE MIR 10 127 -135 4957 216 47 24 chr3 64905997 64906319 -162618259 - L1 LINE L1 -2739 3643 3330 1941 133 6 49 chr3 64906319 64906643 -162617935 - AluSx SINE Alu -2 310 1 4957 216 47 24 chr3 64906643 64907149 -162617429 - L1 LINE L1 -3052 3330 2837 1879 131 56 6 chr3 64907149 64907470 -162617108 + MER44D DNA MER2_type 3 609 0 4957 216 47 24 chr3 64907470 64907561 -162617017 - L1 LINE L1 -3545 2837 2750 2357 127 41 55 chr3 64907561 64907615 -162616963 - Tigger2a DNA MER2_type -2274 434 381 1868 152 10 0 chr3 64907615 64907904 -162616674 - AluSx SINE Alu -20 292 1 2357 127 41 55 chr3 64907904 64908289 -162616289 - Tigger2a DNA MER2_type -2327 381 1 4957 216 47 24 chr3 64908289 64910163 -162614415 - L1 LINE L1 -3632 2750 777 491 223 19 6 chr3 64910786 64910943 -162613635 + FRAM SINE Alu 4 162 -4 2114 103 0 45 chr3 64910952 64911263 -162613315 + AluSg SINE Alu 2 298 -12 22 0 0 0 chr3 64911433 64911455 -162613123 + AT_rich Low_complexity Low_complexity 1 22 0 1353 167 31 98 chr3 64911706 64912024 -162612554 - AluJo SINE Alu -15 297 1 297 284 71 24 chr3 64912479 64912606 -162611972 - L2 LINE L2 -220 3052 2920 1634 127 74 63 chr3 64913005 64913304 -162611274 + AluSx SINE Alu 3 304 -8 315 0 0 0 chr3 64913594 64913629 -162610949 + (TG)n Simple_repeat Simple_repeat 2 36 0 1039 202 126 99 chr3 64913645 64913860 -162610718 + MLT1D LTR MaLR 8 216 -289 2102 113 0 41 chr3 64913860 64914179 -162610399 + AluSx SINE Alu 1 306 -6 1039 202 126 99 chr3 64914179 64914389 -162610189 + MLT1D LTR MaLR 216 450 -55 2236 105 0 7 chr3 64914389 64914683 -162609895 - AluSx SINE Alu -17 295 4 1039 202 126 99 chr3 64914683 64914741 -162609837 + MLT1D LTR MaLR 450 505 0 2408 78 3 0 chr3 64915635 64915931 -162608647 - AluSp SINE Alu -16 297 1 227 333 103 0 chr3 64916020 64916098 -162608480 + L2 LINE L2 3186 3271 -1 421 319 96 0 chr3 64916349 64916484 -162608094 + MIR SINE MIR 35 182 -80 21 0 0 0 chr3 64916587 64916608 -162607970 + AT_rich Low_complexity Low_complexity 1 21 0 472 262 47 17 chr3 64916755 64916988 -162607590 - L1MC5 LINE L1 -238 7723 7484 1022 164 40 30 chr3 64917328 64917529 -162607049 - MER3 DNA MER1_type -6 203 1 302 346 217 13 chr3 64917669 64918434 -162606144 + L2 LINE L2 566 1486 -1828 2299 84 3 35 chr3 64918624 64918935 -162605643 - AluSx SINE Alu -11 301 1 794 252 87 34 chr3 64919000 64919381 -162605197 + L1ME3 LINE L1 5760 6160 -2 900 278 81 30 chr3 64920629 64920999 -162603579 + MLT1I LTR MaLR 11 399 -10 22 0 0 0 chr3 64921044 64921066 -162603512 + AT_rich Low_complexity Low_complexity 1 22 0 2188 129 0 0 chr3 64921549 64921851 -162602727 + AluSx SINE Alu 5 306 -6 692 168 8 8 chr3 64922132 64922251 -162602327 + FLAM_A SINE Alu 2 120 -13 24 0 0 0 chr3 64922254 64922278 -162602300 + AT_rich Low_complexity Low_complexity 1 24 0 231 235 25 12 chr3 64922626 64922707 -162601871 + (CATATA)n Simple_repeat Simple_repeat 5 86 0 412 260 20 0 chr3 64922744 64922844 -162601734 - MER69A DNA AcHobo -74 103 2 323 138 86 0 chr3 64923217 64923275 -162601303 + MLT1I LTR MaLR 294 356 -53 27 49 0 0 chr3 64923859 64923900 -162600678 + AT_rich Low_complexity Low_complexity 1 41 0 2217 91 0 7 chr3 64924482 64924815 -162599763 + AluSq SINE Alu 1 331 0 5556 166 40 9 chr3 64924863 64925126 -162599452 + L1PA16 LINE L1 4114 4367 -1799 1694 111 149 4 chr3 64925126 64925388 -162599190 + AluSx SINE Alu 1 300 -2 5556 166 40 9 chr3 64925388 64925412 -162599166 + L1PA16 LINE L1 4367 4389 -1777 201 74 0 0 chr3 64925412 64925439 -162599139 + (CA)n Simple_repeat Simple_repeat 2 28 0 5556 166 40 9 chr3 64925439 64927139 -162597439 + L1PA16 LINE L1 4389 6157 -9 1929 149 0 7 chr3 64927161 64927449 -162597129 + AluJo SINE Alu 1 286 -26 1518 269 91 47 chr3 64927507 64927980 -162596598 + L1MEc LINE L1 857 1308 -5088 1638 183 60 0 chr3 64927980 64928264 -162596314 + AluJo SINE Alu 1 301 -11 1518 269 91 47 chr3 64928264 64929059 -162595519 + L1MEc LINE L1 1308 2181 -4215 413 130 0 0 chr3 64929561 64929630 -162594948 - Alu SINE Alu -8 302 234 1068 132 7 7 chr3 64929630 64929782 -162594796 - AluSq/x SINE Alu -160 152 1 202 224 20 0 chr3 64930157 64930206 -162594372 + (CACCC)n Simple_repeat Simple_repeat 2 51 0 2380 113 0 0 chr3 64930998 64931309 -162593269 + AluY SINE Alu 1 311 0 2077 112 31 0 chr3 64931917 64932204 -162592374 - AluSx SINE Alu -16 296 1 216 0 0 0 chr3 64932676 64932700 -162591878 + (TG)n Simple_repeat Simple_repeat 2 25 0 680 270 60 8 chr3 64932916 64933164 -162591414 - MIR SINE MIR 0 262 2 1572 136 0 0 chr3 64933309 64933530 -162591048 - AluSg/x SINE Alu -15 295 75 1013 163 0 84 chr3 64935034 64935236 -162589342 + FRAM SINE Alu 1 176 0 24 0 0 0 chr3 64935763 64935787 -162588791 + AT_rich Low_complexity Low_complexity 1 24 0 1930 164 0 22 chr3 64935796 64936107 -162588471 + AluJo SINE Alu 1 304 -8 1912 158 3 0 chr3 64937040 64937331 -162587247 + AluSx SINE Alu 1 292 -20 28 29 0 0 chr3 64937604 64937639 -162586939 + AT_rich Low_complexity Low_complexity 1 35 0 592 288 5 16 chr3 64937643 64937827 -162586751 + MIR SINE MIR 81 262 0 257 250 0 0 chr3 64938920 64938976 -162585602 + L2 LINE L2 2290 2345 -969 718 257 124 75 chr3 64938979 64939446 -162585132 + MLT1J LTR MaLR 2 491 -20 748 290 81 32 chr3 64939455 64939803 -162584775 + L2 LINE L2 2804 3168 -145 362 217 38 19 chr3 64939999 64940105 -162584473 - Charlie7 DNA MER1_type -1755 857 750 3302 38 0 0 chr3 64940110 64940503 -162584075 + L1PA5 LINE L1 5759 6151 -3 307 214 11 34 chr3 64940680 64940765 -162583813 - Charlie7 DNA MER1_type -1849 763 681 939 278 51 32 chr3 64940765 64941200 -162583378 - MLT1L LTR MaLR -2 613 171 495 222 0 0 chr3 64941205 64941322 -162583256 + (TA)n Simple_repeat Simple_repeat 1 117 0 593 188 10 0 chr3 64941330 64941426 -162583152 - AluSc SINE Alu -20 289 193 690 75 0 0 chr3 64941552 64941645 -162582933 + (TA)n Simple_repeat Simple_repeat 2 94 0 189 394 10 0 chr3 64941924 64942023 -162582555 + L2 LINE L2 2589 2688 -626 1130 249 87 45 chr3 64942269 64942738 -162581840 + MLT2B1 LTR ERVL 3 491 -29 247 307 102 24 chr3 64942858 64942985 -162581593 + L2 LINE L2 3173 3309 -4 409 309 79 0 chr3 64943470 64943648 -162580930 + L1MC/D LINE L1 5632 5823 -1985 823 153 68 37 chr3 64943650 64943813 -162580765 + FRAM SINE Alu 9 176 0 354 254 31 31 chr3 64944252 64944382 -162580196 - MIR SINE MIR -9 253 124 2366 93 3 0 chr3 64944541 64944851 -162579727 + AluY SINE Alu 1 311 0 500 313 94 46 chr3 64945556 64946032 -162578546 + MLT1K LTR MaLR 2 500 -88 1438 214 37 33 chr3 64946099 64946528 -162578050 - MER63B DNA MER1_type 0 436 6 25 31 0 0 chr3 64946818 64946850 -162577728 + AT_rich Low_complexity Low_complexity 1 32 0 1048 162 0 66 chr3 64946854 64947051 -162577527 + AluJo SINE Alu 1 184 -128 1308 81 17 12 chr3 64947154 64947326 -162577252 - AluSq SINE Alu -140 173 1 330 315 94 16 chr3 64947356 64947483 -162577095 - MIR3 SINE MIR -3 205 69 207 0 0 0 chr3 64947683 64947706 -162576872 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2184 93 7 0 chr3 64947706 64947984 -162576594 - AluSp SINE Alu -33 280 1 1630 69 5 0 chr3 64948802 64949004 -162575574 - AluSp SINE Alu -1 312 110 303 167 0 0 chr3 64949081 64949147 -162575431 + C-rich Low_complexity Low_complexity 1 66 0 274 202 0 48 chr3 64949451 64949555 -162575023 + CT-rich Low_complexity Low_complexity 2 100 0 204 158 0 0 chr3 64949731 64949769 -162574809 + G-rich Low_complexity Low_complexity 2 39 0 303 263 0 0 chr3 64949841 64950001 -162574577 + G-rich Low_complexity Low_complexity 1 160 0 1036 134 19 0 chr3 64950177 64950334 -162574244 + AluSg/x SINE Alu 133 292 -18 226 221 118 0 chr3 64951252 64951320 -162573258 - L2 LINE L2 -6 3307 3232 284 284 0 39 chr3 64951521 64951623 -162572955 + CT-rich Low_complexity Low_complexity 2 99 0 2243 104 7 10 chr3 64952083 64952392 -162572186 + AluSx SINE Alu 1 308 -4 1947 148 13 3 chr3 64952618 64952966 -162571612 - AluJb SINE Alu 0 312 1 810 267 5 32 chr3 64953022 64953243 -162571335 + MIR SINE MIR 27 241 -21 1005 154 64 0 chr3 64953433 64953621 -162570957 + L1M4 LINE L1 5487 5686 -498 838 172 68 40 chr3 64953645 64953895 -162570683 - L1MC4a LINE L1 -1491 6317 6061 3343 180 14 14 chr3 64953910 64954560 -162570018 - L1MD1 LINE L1 0 6242 5593 210 71 0 0 chr3 64954560 64954588 -162569990 + (T)n Simple_repeat Simple_repeat 1 28 0 5615 102 45 1 chr3 64954620 64955588 -162568990 - L1PA15 LINE L1 -5 6160 5152 240 179 15 75 chr3 64955601 64955617 -162568961 - L1MD1 LINE L1 -644 5598 5583 1479 143 0 9 chr3 64955617 64955833 -162568745 + AluJb SINE Alu 86 299 -13 240 179 15 75 chr3 64955833 64955883 -162568695 - L1MD1 LINE L1 -659 5583 5536 2130 129 10 0 chr3 64956028 64956322 -162568256 - AluSx SINE Alu -15 297 1 788 182 71 35 chr3 64956588 64956786 -162567792 - L1MD2 LINE L1 -12 6347 6143 21 0 0 0 chr3 64957064 64957085 -162567493 + AT_rich Low_complexity Low_complexity 1 21 0 1387 264 128 33 chr3 64957224 64957816 -162566762 - L1ME3 LINE L1 -17 6214 5679 2214 94 7 0 chr3 64957816 64958140 -162566438 - AluSg SINE Alu 0 310 1 1387 264 128 33 chr3 64958140 64958785 -162565793 - L1ME3 LINE L1 -552 5679 4860 5711 98 20 29 chr3 64958834 64959141 -162565437 - L1PB1 LINE L1 0 6151 5843 1982 132 7 7 chr3 64959141 64959437 -162565141 + AluSx SINE Alu 3 298 -14 5711 98 20 29 chr3 64959437 64960184 -162564394 - L1PB1 LINE L1 -308 5843 5108 646 229 8 60 chr3 64960181 64960447 -162564131 - L1ME3 LINE L1 -1439 4776 4525 * 3888 150 83 10 chr3 64960465 64961385 -162563193 - L1MC1 LINE L1 0 6613 5612 2038 126 0 19 chr3 64961385 64961695 -162562883 - AluSx SINE Alu -8 304 1 1376 199 43 99 chr3 64961695 64962232 -162562346 - L1MC1 LINE L1 -2219 4207 3701 1691 190 48 41 chr3 64962242 64962925 -162561653 - L1MC1 LINE L1 -3874 2733 2057 1014 136 0 6 chr3 64962937 64963113 -162561465 - L1MA5A LINE L1 -6 6291 6117 3459 139 34 5 chr3 64963113 64963725 -162560853 + Tigger2 DNA MER2_type 1 630 -2088 377 240 0 0 chr3 64963725 64963821 -162560757 - L1ME3 LINE L1 -2360 3855 3760 669 146 9 0 chr3 64963821 64963931 -162560647 + Tigger2 DNA MER2_type 634 744 -1974 1072 165 102 17 chr3 64963996 64964232 -162560346 + Tigger2 DNA MER2_type 2451 2706 -12 11145 146 40 38 chr3 64964233 64964915 -162559663 - L1MA5A LINE L1 -178 6119 5440 3632 199 21 81 chr3 64964915 64965945 -162558633 - LTR5 LTR ERVK 0 969 1 11145 146 40 38 chr3 64965945 64966042 -162558536 - L1MA5A LINE L1 -857 5440 5345 1724 159 21 17 chr3 64966042 64966332 -162558246 - AluJb SINE Alu -15 297 7 11145 146 40 38 chr3 64966332 64966447 -162558131 - L1MA5A LINE L1 -952 5345 5232 2137 96 19 59 chr3 64966447 64966770 -162557808 - AluSg SINE Alu 0 310 1 11145 146 40 38 chr3 64966770 64969044 -162555534 - L1MA5A LINE L1 -1065 5232 2928 1761 188 0 3 chr3 64969044 64969326 -162555252 - AluJb SINE Alu -16 296 16 11145 146 40 38 chr3 64969326 64969490 -162555088 - L1MA5A LINE L1 -3369 2928 2766 1134 104 99 9 chr3 64969518 64969730 -162554848 - L1MA5 LINE L1 -134 6166 5936 * 1392 180 15 209 chr3 64969713 64969732 -162554846 - L1MA5A LINE L1 -3369 2777 2756 8237 97 36 59 chr3 64969732 64971129 -162553449 - SVA Other Other -1 1385 20 1392 180 15 209 chr3 64971129 64971435 -162553143 - L1MA5A LINE L1 -3390 2756 2392 189 107 0 0 chr3 64971435 64971463 -162553115 + (TA)n Simple_repeat Simple_repeat 2 29 0 2257 101 3 0 chr3 64971463 64971751 -162552827 - AluSp SINE Alu -24 289 1 1392 180 15 209 chr3 64971751 64971793 -162552785 - L1MA5A LINE L1 -3753 2393 2345 702 117 0 9 chr3 64971793 64971904 -162552674 - FLAM_C SINE Alu -33 110 1 1392 180 15 209 chr3 64971904 64972224 -162552354 - L1MA5A LINE L1 -3801 2345 2132 812 186 22 11 chr3 64972230 64972413 -162552165 - L1MC1 LINE L1 -6200 226 42 422 226 113 40 chr3 64972411 64972588 -162551990 - L1ME3 LINE L1 -4537 1859 1670 * 398 273 83 49 chr3 64972680 64972984 -162551594 - L1ME3 LINE L1 -5352 1044 752 882 220 0 19 chr3 64972984 64973143 -162551435 + FRAM SINE Alu 2 157 -9 398 273 83 49 chr3 64973143 64973374 -162551204 - L1ME3 LINE L1 -5644 752 441 1811 139 112 0 chr3 64973383 64973670 -162550908 + MER7A DNA MER2_type 1 317 -29 739 289 30 19 chr3 64973866 64974129 -162550449 - L1ME3 LINE L1 -6094 302 37 1227 286 83 32 chr3 64974765 64975391 -162549187 - L1MEc LINE L1 -5014 1382 725 435 194 65 21 chr3 64975397 64975490 -162549088 + MER58 DNA MER1_type 1 97 -118 2135 130 3 0 chr3 64975499 64975799 -162548779 + AluSx SINE Alu 1 301 -11 921 128 0 4 chr3 64975822 64976040 -162548538 + AluSg1 SINE Alu 3 311 -1 460 198 25 0 chr3 64976040 64976121 -162548457 + MER58 DNA MER1_type 133 2420 0 949 309 77 28 chr3 64976126 64976779 -162547799 - L1MEc LINE L1 -5674 722 38 1876 166 124 54 chr3 64976979 64977407 -162547171 - MER31B LTR ERV1 -8 458 1 502 250 67 17 chr3 64977935 64978115 -162546463 + L2 LINE L2 3125 3313 0 894 188 91 5 chr3 64978180 64978214 -162546364 - MLT2D LTR ERVL -13 401 371 207 0 0 0 chr3 64978214 64978237 -162546341 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 894 188 91 5 chr3 64978237 64978399 -162546179 - MLT2D LTR ERVL -43 371 188 45320 36 3 1 chr3 64978402 64984545 -162540033 - L1PA3 LINE L1 0 6155 4 1051 125 11 28 chr3 64984545 64984721 -162539857 - MLT2D LTR ERVL -209 205 33 236 36 0 0 chr3 64984724 64984752 -162539826 - LTR55 LTR ERV -520 28 1 328 161 0 0 chr3 64984752 64984814 -162539764 - L1MC/D LINE L1 -2347 5461 5400 445 291 112 68 chr3 64984830 64985170 -162539408 - MLT1J1 LTR MaLR -21 425 71 310 270 68 18 chr3 64985211 64985374 -162539204 - L1MC/D LINE L1 -2384 5424 5254 2301 102 0 0 chr3 64986178 64986481 -162538097 - AluSx SINE Alu -9 303 1 271 295 38 48 chr3 64986916 64987021 -162537557 + L2 LINE L2 3169 3272 0 342 196 0 93 chr3 64987113 64987210 -162537368 - L2 LINE L2 -36 3277 3190 1089 185 39 0 chr3 64988308 64988486 -162536092 - MER5A DNA MER1_type -4 185 1 522 245 0 70 chr3 64988782 64988925 -162535653 - L2 LINE L2 0 3313 3181 372 286 11 11 chr3 64988959 64989050 -162535528 - MER5A DNA MER1_type -34 155 65 8136 165 48 24 chr3 64989070 64989244 -162535334 + L1MA8 LINE L1 3784 3952 -2339 1954 140 13 29 chr3 64989244 64989558 -162535020 + AluSx SINE Alu 1 309 -3 8136 165 48 24 chr3 64989558 64990375 -162534203 + L1MA8 LINE L1 3952 4748 -1543 1334 139 98 0 chr3 64990375 64990590 -162533988 - MER46A DNA MER2_type 0 236 1 8136 165 48 24 chr3 64990590 64991918 -162532660 + L1MA8 LINE L1 4748 6171 -120 387 294 0 92 chr3 64992068 64992174 -162532404 - MIR SINE MIR -66 142 108 2023 109 62 86 chr3 64992174 64992558 -162532020 - THE1C LTR MaLR 0 375 1 387 294 0 92 chr3 64992558 64992647 -162531931 - MIR SINE MIR -100 108 12 192 264 0 38 chr3 64992633 64992686 -162531892 - L2 LINE L2 -202 3070 3020 * 369 271 79 17 chr3 64993353 64993530 -162531048 + LTR16C LTR ERVL 299 486 -5 184 182 68 0 chr3 64994412 64994456 -162530122 - MIR3 SINE MIR -41 167 121 598 241 47 26 chr3 64994785 64994976 -162529602 - MLT1L LTR MaLR -11 604 410 596 276 51 10 chr3 64995038 64995234 -162529344 - LTR67 LTR ERVL -24 533 330 1370 134 0 102 chr3 64995313 64995471 -162529107 - AluJo SINE Alu -22 290 166 1697 171 7 7 chr3 64995471 64995757 -162528821 - AluSx SINE Alu -26 286 1 1370 134 0 102 chr3 64995757 64995852 -162528726 - AluJo SINE Alu -146 166 63 448 294 32 8 chr3 64995885 64996011 -162528567 - LTR67 LTR ERVL -332 225 97 1045 165 53 19 chr3 64997389 64997595 -162526983 - MER20 DNA MER1_type -6 213 1 2269 80 10 3 chr3 64997751 64998040 -162526538 + AluSx SINE Alu 1 291 -21 772 242 64 95 chr3 64998644 64999223 -162525355 - MER34B LTR ERV1 0 542 4 511 266 38 11 chr3 64999533 64999717 -162524861 + MIR SINE MIR 70 258 -4 2509 92 52 0 chr3 65000012 65000380 -162524198 - HERVH LTR ERV1 -3 7710 7324 1401 117 33 0 chr3 65000380 65000593 -162523985 - HERVH LTR ERV1 -1894 5819 5600 3064 134 0 2 chr3 65000597 65001209 -162523369 - HERVH LTR ERV1 -2567 5146 4488 5685 104 19 2 chr3 65001211 65002049 -162522529 - HERVH LTR ERV1 -3720 3993 3142 * 15430 109 8 22 chr3 65002030 65004863 -162519715 - HERVH LTR ERV1 -4718 2995 1 3479 67 2 30 chr3 65004865 65005326 -162519252 - LTR7 LTR ERV1 -2 448 1 1649 185 30 0 chr3 65005425 65005728 -162518850 + AluJb SINE Alu 1 312 0 2233 97 0 3 chr3 65005769 65006068 -162518510 - AluY SINE Alu -11 300 3 2487 96 0 0 chr3 65006381 65006693 -162517885 + AluSx SINE Alu 1 312 0 450 0 0 0 chr3 65006703 65006753 -162517825 + (TA)n Simple_repeat Simple_repeat 1 50 0 339 232 74 0 chr3 65006960 65007055 -162517523 + MER113 DNA MER1_type? 1 102 -419 276 210 32 16 chr3 65007182 65007244 -162517334 + MER113 DNA MER1_type? 456 518 -3 369 0 0 0 chr3 65007556 65007597 -162516981 + (TG)n Simple_repeat Simple_repeat 2 42 0 1127 193 109 8 chr3 65007999 65008238 -162516340 - AluJo SINE Alu -29 283 21 234 289 0 0 chr3 65008556 65008608 -162515970 + L1ME LINE L1 5485 5536 -585 * 292 253 42 54 chr3 65008606 65008772 -162515806 - L1MC/D LINE L1 -2330 5478 5315 2365 139 57 0 chr3 65008999 65009352 -162515226 - MER83C LTR ERV1 0 373 1 1615 196 127 6 chr3 65009394 65009726 -162514852 - MLT1A2 LTR MaLR -2 372 1 784 251 32 36 chr3 65009777 65009996 -162514582 + MIR SINE MIR 40 257 -5 955 270 106 37 chr3 65010681 65011136 -162513442 - MLT1K LTR MaLR -23 565 80 2125 132 0 0 chr3 65011610 65011905 -162512673 + AluSx SINE Alu 1 295 -17 2378 97 0 6 chr3 65014791 65015102 -162509476 + AluSg SINE Alu 1 309 -1 21 82 0 0 chr3 65015779 65015828 -162508750 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr3 65016787 65016823 -162507755 + AT_rich Low_complexity Low_complexity 1 36 0 1013 199 89 21 chr3 65018127 65018363 -162506215 - MIR SINE MIR -5 257 6 21 36 0 0 chr3 65018394 65018422 -162506156 + AT_rich Low_complexity Low_complexity 1 28 0 1936 186 71 69 chr3 65018699 65019203 -162505375 + MLT1D LTR MaLR 1 505 0 1452 85 0 16 chr3 65019332 65019520 -162505058 + AluY SINE Alu 1 185 -126 529 79 0 0 chr3 65019520 65019596 -162504982 + AluY SINE Alu 232 307 -2 2363 93 0 10 chr3 65020263 65020576 -162504002 + AluSx SINE Alu 1 310 -2 207 0 0 0 chr3 65021557 65021580 -162502998 + (A)n Simple_repeat Simple_repeat 1 23 0 1746 142 41 7 chr3 65021678 65021973 -162502605 - AluY SINE Alu -6 305 1 1698 157 20 30 chr3 65022182 65022482 -162502096 - AluJo SINE Alu -15 297 1 371 208 117 0 chr3 65022528 65022605 -162501973 - AluJ/FRAM SINE Alu -2 300 215 2246 103 0 0 chr3 65022638 65022930 -162501648 - AluSg SINE Alu -18 292 1 872 208 12 6 chr3 65023416 65023584 -162500994 - FAM SINE Alu -2 173 5 2362 102 0 0 chr3 65023588 65023901 -162500677 - AluSq SINE Alu 0 313 1 250 302 28 28 chr3 65024063 65024169 -162500409 + MIR SINE MIR 21 126 -82 273 259 180 21 chr3 65024203 65024442 -162500136 - L1ME4a LINE L1 -8 6113 5837 568 174 41 0 chr3 65024660 65024758 -162499820 - FRAM SINE Alu -13 163 62 185 0 0 39 chr3 65024773 65024799 -162499779 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 891 104 0 0 chr3 65024802 65024917 -162499661 - AluSp/q SINE Alu -30 283 169 1144 95 0 7 chr3 65024945 65025093 -162499485 + AluSg SINE Alu 1 147 -163 276 210 32 16 chr3 65025252 65025314 -162499264 + MER113 DNA MER1_type? 456 518 -3 459 0 0 0 chr3 65025626 65025677 -162498901 + (TG)n Simple_repeat Simple_repeat 2 52 0 1374 175 97 8 chr3 65026059 65026327 -162498251 - AluJo SINE Alu 0 312 21 699 221 44 0 chr3 65026743 65026901 -162497677 - L1MC4a LINE L1 -1196 6612 6448 1884 328 60 11 chr3 65026927 65027786 -162496792 + MERVL LTR ERVL 4426 5327 -158 1260 207 39 94 chr3 65028150 65028608 -162495970 + LTR41 LTR ERVL 3 435 -338 4776 127 4 13 chr3 65028762 65029100 -162495478 - L1PA13 LINE L1 -1 6162 5823 2236 118 7 0 chr3 65029100 65029406 -162495172 - AluSq SINE Alu -5 308 1 4776 127 4 13 chr3 65029406 65029784 -162494794 - L1PA13 LINE L1 -340 5823 5452 768 115 0 16 chr3 65029784 65029900 -162494678 - L1PA13 LINE L1 -197 5966 5853 3613 146 18 32 chr3 65029904 65030033 -162494545 - L1PA13 LINE L1 -718 5450 5321 2524 64 0 0 chr3 65030033 65030330 -162494248 - AluY SINE Alu -14 297 1 3613 146 18 32 chr3 65030330 65030928 -162493650 - L1PA13 LINE L1 -847 5321 4728 1663 148 0 8 chr3 65031092 65031348 -162493230 - AluSx SINE Alu -11 301 48 2283 94 14 3 chr3 65031634 65031931 -162492647 + AluSx SINE Alu 1 300 -12 237 169 0 117 chr3 65032642 65032719 -162491859 - L2 LINE L2 -1273 2041 1974 25 51 0 0 chr3 65032874 65032913 -162491665 + AT_rich Low_complexity Low_complexity 1 39 0 2636 163 140 16 chr3 65033900 65034472 -162490106 - L1MC4 LINE L1 -955 7087 6445 2320 122 9 0 chr3 65035104 65035441 -162489137 - L1PA13 LINE L1 -1 6162 5823 1860 96 8 0 chr3 65035441 65035692 -162488886 - AluSq SINE Alu -5 308 56 1534 148 13 8 chr3 65035865 65036102 -162488476 + AluJo SINE Alu 62 299 -13 2428 205 76 44 chr3 65036545 65036996 -162487582 + HsTC2a DNA Tc2 10 494 -1406 2447 74 0 6 chr3 65036996 65037308 -162487270 + AluY SINE Alu 1 310 -1 2428 205 76 44 chr3 65037308 65037564 -162487014 + HsTC2a DNA Tc2 494 740 -4 2239 170 36 7 chr3 65038173 65038591 -162485987 + L1MC3 LINE L1 7356 7785 0 759 199 22 66 chr3 65038586 65038602 -162485976 + L1MD3 LINE L1 7770 7785 -210 * 1473 205 3 17 chr3 65038602 65038899 -162485679 + AluJo SINE Alu 1 293 -19 759 199 22 66 chr3 65038899 65039108 -162485470 + L1MD3 LINE L1 7785 7985 -10 2182 132 0 0 chr3 65039767 65040070 -162484508 - AluSx SINE Alu -9 303 1 255 311 66 16 chr3 65040590 65040712 -162483866 + MIR SINE MIR 16 143 -65 430 244 43 17 chr3 65040776 65040891 -162483687 + L2 LINE L2 3150 3267 -5 361 211 157 30 chr3 65041260 65041426 -162483152 + HAL1 LINE L1 895 1081 -1426 822 149 0 0 chr3 65041428 65041542 -162483036 + AluJb SINE Alu 2 115 -197 2899 58 44 60 chr3 65041577 65041974 -162482604 + L1PB1 LINE L1 5403 5794 -357 405 0 0 0 chr3 65041974 65042019 -162482559 + (TA)n Simple_repeat Simple_repeat 2 46 0 2899 58 44 60 chr3 65042019 65042052 -162482526 + L1PB1 LINE L1 5794 5826 -325 2231 123 0 9 chr3 65042055 65042371 -162482207 + AluSq SINE Alu 1 313 0 1585 164 75 3 chr3 65042372 65042690 -162481888 + L1MC3 LINE L1 7445 7785 0 296 234 13 65 chr3 65042873 65042950 -162481628 - L2 LINE L2 0 3272 3200 537 293 96 36 chr3 65043033 65043471 -162481107 + L2 LINE L2 2797 3272 0 230 266 105 73 chr3 65043751 65043875 -162480703 - MIR3 SINE MIR -76 132 5 2291 195 74 27 chr3 65044138 65044327 -162480251 + L1MC4 LINE L1 7318 7497 -545 1664 151 27 27 chr3 65044327 65044626 -162479952 - AluJo SINE Alu -13 299 1 2291 195 74 27 chr3 65044626 65044991 -162479587 + L1MC4 LINE L1 7497 7898 -144 278 167 0 0 chr3 65044993 65045047 -162479531 + L1MC4 LINE L1 7987 8040 -2 2208 99 7 0 chr3 65045155 65045466 -162479112 - AluSx SINE Alu 0 313 1 233 330 48 0 chr3 65046037 65046140 -162478438 + L2 LINE L2 2376 2483 -831 797 261 113 0 chr3 65046284 65046506 -162478072 - MIR SINE MIR 0 262 16 500 201 123 53 chr3 65046652 65046896 -162477682 - L1MC5 LINE L1 -55 7906 7646 194 369 117 10 chr3 65046898 65047001 -162477577 + L2 LINE L2 3147 3260 -12 2166 108 14 0 chr3 65047013 65047308 -162477270 - AluSg SINE Alu -11 299 1 312 261 57 24 chr3 65047709 65047870 -162476708 + L1MC/D LINE L1 5669 5835 -332 180 0 0 0 chr3 65047880 65047900 -162476678 + (TG)n Simple_repeat Simple_repeat 2 21 0 1664 52 5 0 chr3 65047964 65048156 -162476422 + L1PA6 LINE L1 5958 6150 -4 2390 91 0 0 chr3 65048378 65048674 -162475904 - AluSc SINE Alu -13 296 1 353 308 75 17 chr3 65048877 65048997 -162475581 - L2 LINE L2 -4 3268 3142 2188 108 0 7 chr3 65049106 65049401 -162475177 - AluSg SINE Alu -17 293 1 1802 176 10 10 chr3 65049401 65049706 -162474872 - AluJo SINE Alu -6 306 1 2418 77 7 0 chr3 65049716 65050015 -162474563 - AluSp SINE Alu -12 301 1 316 202 107 36 chr3 65050284 65050368 -162474210 - L2 LINE L2 0 3313 3224 255 282 111 34 chr3 65050920 65051037 -162473541 + MIR SINE MIR 17 142 -120 219 69 0 0 chr3 65051251 65051280 -162473298 + (T)n Simple_repeat Simple_repeat 1 29 0 1846 113 40 7 chr3 65051314 65051588 -162472990 - AluSx SINE Alu -29 283 1 508 269 48 43 chr3 65051627 65051835 -162472743 + MER3 DNA MER1_type 1 209 0 * 1125 171 10 5 chr3 65051674 65051873 -162472705 - MER3 DNA MER1_type 0 209 10 2306 97 3 0 chr3 65051974 65052273 -162472305 - AluSx SINE Alu -12 300 1 1918 143 11 0 chr3 65052400 65052686 -162471892 - AluJb SINE Alu -23 289 1 24 32 0 0 chr3 65053048 65053079 -162471499 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr3 65053107 65053132 -162471446 + AT_rich Low_complexity Low_complexity 1 25 0 518 276 93 49 chr3 65053154 65053379 -162471199 - MIR SINE MIR -14 248 14 2046 113 30 13 chr3 65054109 65054411 -162470167 - AluSx SINE Alu -5 307 1 25 0 0 0 chr3 65054411 65054436 -162470142 + AT_rich Low_complexity Low_complexity 1 25 0 845 152 56 0 chr3 65054436 65054561 -162470017 - AluJo SINE Alu -176 136 5 21 0 0 0 chr3 65054570 65054591 -162469987 + AT_rich Low_complexity Low_complexity 1 21 0 405 311 25 8 chr3 65054687 65054806 -162469772 + MER5A DNA MER1_type 69 189 0 2234 79 30 10 chr3 65055467 65055770 -162468808 - AluSc SINE Alu 0 309 1 2120 110 10 0 chr3 65055996 65056305 -162468273 - AluSx SINE Alu 0 312 1 23 0 0 0 chr3 65056689 65056712 -162467866 + AT_rich Low_complexity Low_complexity 1 23 0 357 284 125 67 chr3 65057784 65058175 -162466403 - L1M2 LINE L1 -5884 965 552 1698 163 10 24 chr3 65059387 65059676 -162464902 + AluJb SINE Alu 1 285 -27 21 36 0 0 chr3 65059716 65059744 -162464834 + AT_rich Low_complexity Low_complexity 1 28 0 2465 72 0 3 chr3 65059886 65060190 -162464388 - AluY SINE Alu -8 303 1 2179 118 0 14 chr3 65060250 65060547 -162464031 - AluY SINE Alu -18 293 1 341 224 204 0 chr3 65061299 65061397 -162463181 + L2 LINE L2 3155 3272 0 2114 99 4 0 chr3 65061637 65061910 -162462668 - AluSp SINE Alu -13 300 27 2224 108 3 3 chr3 65061923 65062220 -162462358 - AluSx SINE Alu -15 297 1 253 330 191 9 chr3 65063309 65063424 -162461154 - MIR3 SINE MIR -41 167 32 3958 163 63 71 chr3 65064372 65064512 -162460066 - L1MB5 LINE L1 -6 6168 6028 2479 103 42 31 chr3 65064512 65064872 -162459706 - THE1B LTR MaLR 0 364 1 3958 163 63 71 chr3 65064872 65065885 -162458693 - L1MB5 LINE L1 -146 6028 5032 2056 150 67 55 chr3 65066019 65066665 -162457913 - L1M4 LINE L1 -497 5677 5032 280 332 136 47 chr3 65067037 65067522 -162457056 - L2 LINE L2 -1 3271 2728 790 164 19 101 chr3 65067998 65068206 -162456372 + LTR41 LTR ERVL 577 767 -6 268 207 27 104 chr3 65068211 65068304 -162456274 - L1MC4 LINE L1 -1415 6393 6294 2415 84 0 3 chr3 65068304 65068603 -162455975 - AluSc SINE Alu -11 298 1 268 207 27 104 chr3 65068603 65068880 -162455698 - L1MC4 LINE L1 -1514 6294 6106 1755 143 11 0 chr3 65068880 65069145 -162455433 + AluSx SINE Alu 16 283 -29 418 73 36 36 chr3 65069145 65069255 -162455323 + (TA)n Simple_repeat Simple_repeat 1 110 0 514 242 21 63 chr3 65069255 65069445 -162455133 - L1MC4a LINE L1 -1699 6109 5928 838 173 0 0 chr3 65069805 65069938 -162454640 - MLT1A1 LTR MaLR 0 365 233 4996 132 45 69 chr3 65069938 65070963 -162453615 - MER52C LTR ERV1 0 1278 25 1414 171 13 4 chr3 65070970 65071204 -162453374 - MLT1A1 LTR MaLR -129 236 1 336 316 39 68 chr3 65071238 65071472 -162453106 + L1ME4a LINE L1 5724 5950 -212 302 230 130 20 chr3 65072879 65072979 -162451599 + L1ME4a LINE L1 6008 6118 -3 492 304 104 27 chr3 65073127 65073341 -162451237 + L2 LINE L2 2564 2760 -553 2225 96 4 0 chr3 65073341 65073622 -162450956 + AluSp SINE Alu 1 282 -31 379 0 0 0 chr3 65073622 65073664 -162450914 + (CAAAA)n Simple_repeat Simple_repeat 1 45 0 492 304 104 27 chr3 65073664 65073856 -162450722 + L2 LINE L2 2760 3017 -296 217 309 0 15 chr3 65073855 65073923 -162450655 + MER5A DNA MER1_type 123 189 0 * 25 0 0 0 chr3 65074151 65074176 -162450402 + AT_rich Low_complexity Low_complexity 1 25 0 1911 147 0 11 chr3 65074178 65074463 -162450115 - AluJb SINE Alu -30 282 1 937 75 0 0 chr3 65075219 65075339 -162449239 + AluSg/x SINE Alu 183 302 -7 594 221 78 96 chr3 65075346 65075630 -162448948 - L1MC4a LINE L1 -1426 6382 6104 1728 176 0 7 chr3 65075630 65075957 -162448621 + AluJb SINE Alu 1 325 0 594 221 78 96 chr3 65075957 65076069 -162448509 - L1MC4a LINE L1 -1704 6104 5992 2042 215 199 24 chr3 65077253 65078178 -162446400 + HAL1 LINE L1 299 1385 -1122 22 35 0 0 chr3 65078563 65078592 -162445986 + AT_rich Low_complexity Low_complexity 1 29 0 2270 240 126 29 chr3 65078635 65079630 -162444948 + HAL1 LINE L1 1417 2507 0 2266 97 0 3 chr3 65079641 65079940 -162444638 + AluSx SINE Alu 1 298 -14 196 269 77 0 chr3 65080123 65080175 -162444403 + MIR SINE MIR 88 143 -119 375 236 64 0 chr3 65080341 65080451 -162444127 + MER103 DNA DNA 22 138 -28 1679 157 4 11 chr3 65080464 65080732 -162443846 + AluJo SINE Alu 12 277 -35 342 67 0 0 chr3 65080748 65080793 -162443785 + (CA)n Simple_repeat Simple_repeat 2 46 0 207 114 0 0 chr3 65081018 65081053 -162443525 + (TTTTTG)n Simple_repeat Simple_repeat 1 35 0 283 248 176 24 chr3 65082170 65082295 -162442283 - MIR SINE MIR -6 256 113 221 254 70 28 chr3 65082957 65083028 -162441550 - MIR SINE MIR -157 105 32 569 296 127 9 chr3 65083058 65083278 -162441300 + MIR SINE MIR 2 247 -15 293 296 0 0 chr3 65083319 65083400 -162441178 - L3 LINE CR1 -606 971 891 1146 178 17 47 chr3 65083637 65083873 -162440705 + MER46A DNA MER2_type 2 230 -6 207 0 0 0 chr3 65084696 65084719 -162439859 + (T)n Simple_repeat Simple_repeat 1 23 0 1995 175 123 18 chr3 65084746 65085202 -162439376 - LTR22 LTR ERVK 0 509 6 541 226 59 1 chr3 65085388 65085565 -162439013 - L1ME2 LINE L1 -4 6162 5976 296 233 108 78 chr3 65085567 65085799 -162438779 + L1MC/D LINE L1 5290 5528 -2280 707 255 111 38 chr3 65086029 65086410 -162438168 - MLT1J LTR MaLR 0 511 57 2107 110 21 7 chr3 65086410 65086700 -162437878 + AluSx SINE Alu 1 294 -18 707 255 111 38 chr3 65086700 65086757 -162437821 - MLT1J LTR MaLR -454 57 6 433 269 32 13 chr3 65086775 65086931 -162437647 - L1MEd LINE L1 -5365 754 596 319 219 105 9 chr3 65087121 65087235 -162437343 - L1MEd LINE L1 -5982 137 13 371 298 77 24 chr3 65087244 65087412 -162437166 + L2 LINE L2 1821 1997 -1317 * 1285 266 74 30 chr3 65087402 65087434 -162437144 - L2 LINE L2 0 3313 3284 2084 123 0 0 chr3 65087434 65087751 -162436827 - AluSx SINE Alu 0 317 1 1285 266 74 30 chr3 65087751 65088245 -162436333 - L2 LINE L2 -29 3284 2740 1674 177 21 3 chr3 65088245 65088533 -162436045 - AluJo SINE Alu -19 293 1 1285 266 74 30 chr3 65088533 65088672 -162435906 - L2 LINE L2 -573 2740 2609 270 303 137 11 chr3 65088663 65088838 -162435740 + L2 LINE L2 1979 2175 -1139 * 946 166 18 18 chr3 65088844 65089007 -162435571 - AluJb SINE Alu -13 299 137 246 325 0 0 chr3 65089009 65089092 -162435486 + L2 LINE L2 2178 2260 -1054 456 234 89 25 chr3 65089126 65089284 -162435294 + L2 LINE L2 2367 2534 -780 705 212 0 7 chr3 65089346 65089483 -162435095 + FLAM_A SINE Alu 6 141 -1 913 89 0 0 chr3 65089708 65089820 -162434758 + AluSq/x SINE Alu 20 131 -181 2130 116 3 0 chr3 65089823 65090107 -162434471 + AluSx SINE Alu 18 302 -10 407 236 11 11 chr3 65090370 65090459 -162434119 + L2 LINE L2 3182 3270 -2 * 604 308 208 6 chr3 65090454 65091020 -162433558 + L2 LINE L2 2619 3303 -10 2070 106 7 14 chr3 65091020 65091331 -162433247 + AluSx SINE Alu 1 309 0 2416 49 0 3 chr3 65091441 65091729 -162432849 + AluY SINE Alu 1 287 -24 566 0 29 0 chr3 65091729 65091798 -162432780 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 239 261 91 75 chr3 65091956 65092155 -162432423 + L2 LINE L2 3035 3236 -77 23 0 0 0 chr3 65093996 65094019 -162430559 + AT_rich Low_complexity Low_complexity 1 23 0 2150 124 3 3 chr3 65094019 65094325 -162430253 - AluSq SINE Alu -7 306 1 21 0 0 0 chr3 65095655 65095676 -162428902 + AT_rich Low_complexity Low_complexity 1 21 0 2393 34 41 7 chr3 65096377 65096672 -162427906 + AluY SINE Alu 1 305 -6 216 0 0 0 chr3 65096768 65096792 -162427786 + (T)n Simple_repeat Simple_repeat 1 24 0 22 35 0 0 chr3 65097772 65097801 -162426777 + AT_rich Low_complexity Low_complexity 1 29 0 27 54 0 40 chr3 65098250 65098324 -162426254 + AT_rich Low_complexity Low_complexity 1 71 0 734 161 0 22 chr3 65099245 65099382 -162425196 + MLT1A1 LTR MaLR 229 362 -3 222 317 96 19 chr3 65099387 65099491 -162425087 - MIR SINE MIR -28 234 123 2111 130 0 0 chr3 65099522 65099815 -162424763 - AluSx SINE Alu -19 293 1 509 223 36 36 chr3 65099824 65099963 -162424615 - MIR SINE MIR -106 156 18 204 125 0 0 chr3 65100024 65100056 -162424522 + (TTCC)n Simple_repeat Simple_repeat 1 32 0 1960 154 7 10 chr3 65100346 65100479 -162424099 + AluJo SINE Alu 1 133 -179 2168 125 0 0 chr3 65100479 65100776 -162423802 + AluSx SINE Alu 1 297 -15 1960 154 7 10 chr3 65100776 65100948 -162423630 + AluJo SINE Alu 133 305 -7 3923 246 66 20 chr3 65100950 65102556 -162422022 + L1MC/D LINE L1 3034 4751 -1395 718 186 42 117 chr3 65102554 65102722 -162421856 + L1MC/D LINE L1 5116 5295 -871 * 1656 197 3 0 chr3 65102722 65103006 -162421572 + AluJo SINE Alu 1 285 -27 718 186 42 117 chr3 65103006 65103107 -162421471 + L1MC/D LINE L1 5295 5402 -764 2027 112 0 11 chr3 65103107 65103384 -162421194 + AluSx SINE Alu 28 301 -11 718 186 42 117 chr3 65103384 65103555 -162421023 + L1MC/D LINE L1 5402 5521 -645 612 212 161 0 chr3 65104538 65104675 -162419903 - FAM SINE Alu -12 163 5 267 250 78 78 chr3 65105950 65106078 -162418500 - L2 LINE L2 -1 3312 3185 2181 118 0 0 chr3 65106251 65106548 -162418030 - AluSx SINE Alu -15 297 1 394 336 170 21 chr3 65106699 65107258 -162417320 - L2 LINE L2 -446 2868 2227 253 211 0 35 chr3 65107330 65107387 -162417191 + L2 LINE L2 3258 3312 -1 1959 122 14 14 chr3 65107641 65107935 -162416643 - AluSx SINE Alu -16 296 3 1585 185 45 0 chr3 65108814 65109100 -162415478 + AluJo SINE Alu 1 299 -13 2303 99 0 0 chr3 65110680 65110973 -162413605 + AluSx SINE Alu 1 293 -19 708 58 0 0 chr3 65111719 65111805 -162412773 + AluSg/x SINE Alu 216 301 -11 24 0 0 0 chr3 65112031 65112055 -162412523 + AT_rich Low_complexity Low_complexity 1 24 0 255 125 25 0 chr3 65112751 65112791 -162411787 - L3 LINE CR1 -7 1570 1530 22 0 7 0 chr3 65113684 65113738 -162410840 + AT_rich Low_complexity Low_complexity 1 22 0 2209 120 0 0 chr3 65114124 65114424 -162410154 - AluSx SINE Alu -12 300 1 250 276 67 60 chr3 65114496 65114630 -162409948 - L2 LINE L2 0 3313 3179 2164 123 0 0 chr3 65114893 65115186 -162409392 - AluSx SINE Alu -19 293 1 212 301 233 10 chr3 65115214 65115317 -162409261 - MER5A DNA MER1_type -11 178 53 24 32 0 0 chr3 65116059 65116090 -162408488 + AT_rich Low_complexity Low_complexity 1 31 0 755 194 30 0 chr3 65116341 65116475 -162408103 + AluJb SINE Alu 154 291 -21 252 192 96 0 chr3 65116505 65116578 -162408000 - L1MB2 LINE L1 -33 6138 6059 249 321 49 0 chr3 65116807 65116888 -162407690 - L2 LINE L2 0 3313 3229 1877 155 0 7 chr3 65118424 65118721 -162405857 - AluJo SINE Alu -17 295 1 210 37 0 0 chr3 65119714 65119741 -162404837 + (TG)n Simple_repeat Simple_repeat 2 28 0 836 104 9 0 chr3 65119742 65119857 -162404721 - FLAM_C SINE Alu -17 116 1 21 0 0 0 chr3 65120356 65120377 -162404201 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr3 65120777 65120806 -162403772 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr3 65121094 65121129 -162403449 + AT_rich Low_complexity Low_complexity 1 35 0 4664 149 37 10 chr3 65121158 65121768 -162402810 - L1MA4A LINE L1 -24 6279 5687 2430 90 0 0 chr3 65121768 65122079 -162402499 - AluY SINE Alu 0 311 1 4664 149 37 10 chr3 65122079 65122626 -162401952 - L1MA4A LINE L1 -616 5687 5031 2218 117 23 0 chr3 65122647 65122947 -162401631 - AluSx SINE Alu -5 307 1 3257 105 30 9 chr3 65123057 65123075 -162401503 - L1MA2 LINE L1 -6 6298 6282 312 27 0 0 chr3 65123075 65123112 -162401466 + (TG)n Simple_repeat Simple_repeat 1 37 0 2202 104 3 3 chr3 65123114 65123412 -162401166 - AluSx SINE Alu -14 298 1 3257 105 30 9 chr3 65123412 65123916 -162400662 - L1MA2 LINE L1 -22 6282 5762 6849 203 43 40 chr3 65123919 65125401 -162399177 - L1MB2 LINE L1 -443 5861 4371 2167 129 0 3 chr3 65125401 65125711 -162398867 - AluSx SINE Alu -3 309 1 6849 203 43 40 chr3 65125711 65126966 -162397612 - L1MB2 LINE L1 -1933 4371 3121 2158 173 195 4 chr3 65126952 65127460 -162397118 - L1MA4A LINE L1 -1092 5054 4450 * 2149 112 0 3 chr3 65128071 65128366 -162396212 + AluSx SINE Alu 1 294 -18 672 120 10 0 chr3 65128506 65128606 -162395972 + AluSp/q SINE Alu 189 289 -24 310 258 0 32 chr3 65128633 65128726 -162395852 - L1MC4 LINE L1 -1339 6703 6614 6997 58 0 2 chr3 65129125 65130334 -162394244 - L1PA6 LINE L1 -6 6148 4947 1307 86 0 0 chr3 65130334 65130509 -162394069 + L1PA6 LINE L1 4789 4963 -1183 24 0 0 0 chr3 65130581 65130605 -162393973 + AT_rich Low_complexity Low_complexity 1 24 0 6639 72 16 0 chr3 65131808 65132880 -162391698 + L1PA10 LINE L1 5071 6159 -9 519 212 53 37 chr3 65132885 65133074 -162391504 - L1ME4a LINE L1 -52 6069 5878 183 129 0 0 chr3 65133116 65133147 -162391431 + (TA)n Simple_repeat Simple_repeat 2 32 0 3758 108 18 0 chr3 65133222 65133766 -162390812 + MER41A LTR ERV1 1 554 0 1714 145 32 21 chr3 65134306 65134589 -162389989 + AluSx SINE Alu 1 286 -26 517 138 0 0 chr3 65134900 65134980 -162389598 + AluJ/FLAM SINE Alu 8 87 -225 23 0 0 0 chr3 65135570 65135593 -162388985 + AT_rich Low_complexity Low_complexity 1 23 0 247 252 83 130 chr3 65135606 65135836 -162388742 - MIR SINE MIR -43 219 1 2035 97 7 45 chr3 65136183 65136491 -162388087 + AluSq SINE Alu 2 297 -16 202 179 36 0 chr3 65136491 65136547 -162388031 + (TA)n Simple_repeat Simple_repeat 1 58 0 204 130 43 0 chr3 65136561 65136630 -162387948 + (TA)n Simple_repeat Simple_repeat 1 72 0 585 243 248 14 chr3 65137574 65137784 -162386794 - MIR SINE MIR -3 259 1 204 150 25 0 chr3 65137949 65137989 -162386589 + (CATA)n Simple_repeat Simple_repeat 2 42 0 591 317 75 46 chr3 65138115 65138421 -162386157 + L1ME2 LINE L1 387 701 -5504 512 103 0 0 chr3 65138694 65138772 -162385806 + L1MB7 LINE L1 6098 6175 -9 580 140 158 18 chr3 65138802 65138916 -162385662 + FRAM SINE Alu 20 149 -27 312 120 0 0 chr3 65138916 65138966 -162385612 + (CA)n Simple_repeat Simple_repeat 2 51 0 1693 229 57 96 chr3 65138975 65139254 -162385324 + L1ME2 LINE L1 1418 1706 -4690 1453 178 4 0 chr3 65139254 65139523 -162385055 + L1MA4 LINE L1 6020 6289 -11 1693 229 57 96 chr3 65139523 65140158 -162384420 + L1ME2 LINE L1 1706 2296 -4100 266 271 83 0 chr3 65140223 65140319 -162384259 + L1ME2 LINE L1 4951 5054 -1161 2111 102 3 36 chr3 65140570 65140873 -162383705 - AluSg SINE Alu -17 293 1 882 249 89 27 chr3 65141390 65141615 -162382963 + MIR SINE MIR 8 246 -16 1500 191 54 76 chr3 65141907 65142353 -162382225 + L1ME2 LINE L1 5788 6223 -10 24 0 0 0 chr3 65142844 65142868 -162381710 + AT_rich Low_complexity Low_complexity 1 24 0 302 159 186 44 chr3 65147176 65147289 -162377289 - MARNA DNA Mariner -29 557 429 30 69 0 0 chr3 65147306 65147364 -162377214 + AT_rich Low_complexity Low_complexity 1 58 0 180 156 44 22 chr3 65150685 65150730 -162373848 - L2 LINE L2 -1632 1682 1637 2394 56 0 0 chr3 65151100 65151388 -162373190 - AluY SINE Alu -23 288 1 30 45 0 0 chr3 65152559 65152603 -162371975 + AT_rich Low_complexity Low_complexity 1 44 0 1467 125 5 22 chr3 65152890 65153114 -162371464 + AluSx SINE Alu 1 220 -92 196 238 0 0 chr3 65203129 65203171 -162321407 + L2 LINE L2 3008 3049 -223 270 269 154 47 chr3 65205146 65205295 -162319283 + MER5A DNA MER1_type 7 171 -18 2394 80 3 0 chr3 65205902 65206191 -162318387 - AluSq SINE Alu -23 290 1 1705 146 75 14 chr3 65209500 65209781 -162314797 - AluJo SINE Alu -14 298 1 393 275 119 8 chr3 65209830 65210066 -162314512 + L2 LINE L2 3050 3311 -2 180 156 0 0 chr3 65210133 65210165 -162314413 - L2 LINE L2 -267 3046 3015 2320 105 0 0 chr3 65210189 65210483 -162314095 + AluSx SINE Alu 1 294 -18 279 173 0 0 chr3 65211771 65211823 -162312755 + (TA)n Simple_repeat Simple_repeat 1 52 0 1841 166 3 14 chr3 65211824 65212120 -162312458 - AluJo SINE Alu -19 293 1 213 189 54 14 chr3 65212215 65212289 -162312289 + (TA)n Simple_repeat Simple_repeat 1 77 0 616 238 97 15 chr3 65212540 65212746 -162311832 - L1MC4 LINE L1 -384 7658 7436 499 156 42 10 chr3 65214194 65214290 -162310288 - AluJb SINE Alu -3 309 211 946 199 17 6 chr3 65214292 65214468 -162310110 + MER20 DNA MER1_type 42 219 0 312 269 31 39 chr3 65215856 65215986 -162308592 + MER5B DNA MER1_type 5 133 -45 627 247 38 32 chr3 65215994 65216180 -162308398 + L1ME1 LINE L1 5961 6147 -19 987 209 35 0 chr3 65216337 65216538 -162308040 + MER3 DNA MER1_type 1 208 -1 2074 109 57 0 chr3 65216769 65217052 -162307526 - AluSq SINE Alu -14 299 1 2247 92 9 38 chr3 65217729 65218044 -162306534 - AluSg SINE Alu 0 310 5 414 242 62 92 chr3 65218416 65218643 -162305935 - L1ME LINE L1 -355 5766 5547 422 248 50 61 chr3 65218685 65218883 -162305695 + MIR SINE MIR 55 250 -12 21 57 0 0 chr3 65219259 65219294 -162305284 + AT_rich Low_complexity Low_complexity 1 35 0 273 230 0 0 chr3 65219428 65219502 -162305076 + (TG)n Simple_repeat Simple_repeat 1 74 0 190 287 23 35 chr3 65219675 65219762 -162304816 + MIR3 SINE MIR 74 159 -49 2019 129 3 29 chr3 65224320 65224629 -162299949 + AluJo SINE Alu 1 301 -11 2228 102 3 13 chr3 65225706 65226010 -162298568 + AluSx SINE Alu 1 301 -11 2186 99 0 11 chr3 65226584 65226868 -162297710 - AluSp SINE Alu -32 281 1 196 375 100 18 chr3 65226898 65227127 -162297451 + L2 LINE L2 2422 2669 -645 1554 136 24 30 chr3 65227232 65227527 -162297051 - L1MB3 LINE L1 0 6183 5891 218 256 0 0 chr3 65228364 65228407 -162296171 - MIR SINE MIR -3 259 217 1295 151 68 90 chr3 65228857 65229168 -162295410 - AluJo SINE Alu -8 304 1 1784 171 30 10 chr3 65230382 65230687 -162293891 - AluJb SINE Alu -1 311 1 210 118 0 0 chr3 65232083 65232117 -162292461 + (TG)n Simple_repeat Simple_repeat 1 34 0 2015 102 53 30 chr3 65233025 65233328 -162291250 - AluSg SINE Alu 0 310 1 1739 164 18 7 chr3 65233329 65233615 -162290963 - AluJb SINE Alu -23 289 1 573 232 29 48 chr3 65236265 65236472 -162288106 + L1ME3 LINE L1 5938 6140 -22 2342 98 0 0 chr3 65237396 65237691 -162286887 + AluSx SINE Alu 1 295 -17 187 111 0 0 chr3 65237695 65237722 -162286856 + MIR SINE MIR 29 55 -207 414 264 24 24 chr3 65237869 65237994 -162286584 + MIR SINE MIR 131 255 -7 2092 117 3 3 chr3 65238018 65238308 -162286270 - AluSx SINE Alu -18 294 5 242 247 12 74 chr3 65238357 65238438 -162286140 + MIR SINE MIR 187 262 0 937 265 54 25 chr3 65238458 65238493 -162286085 + MER46C DNA MER2_type 13 46 -292 1965 96 4 0 chr3 65238493 65238744 -162285834 - AluSp SINE Alu -15 298 47 937 265 54 25 chr3 65238744 65239025 -162285553 + MER46C DNA MER2_type 46 338 0 209 176 0 0 chr3 65239486 65239520 -162285058 + CT-rich Low_complexity Low_complexity 1 34 0 273 214 278 8 chr3 65240000 65240126 -162284452 + MIR SINE MIR 13 172 -90 229 250 159 11 chr3 65240324 65240412 -162284166 - MER5A DNA MER1_type -58 131 31 2129 143 3 0 chr3 65240601 65240908 -162283670 - AluJo SINE Alu -4 308 1 207 309 155 0 chr3 65240912 65241035 -162283543 - MER5A DNA MER1_type -38 151 1 577 337 38 22 chr3 65242394 65242578 -162282000 - MIR SINE MIR -39 223 37 2160 121 6 13 chr3 65242613 65242927 -162281651 - AluSx SINE Alu 0 312 1 301 275 81 20 chr3 65243651 65243800 -162280778 + MIR SINE MIR 28 185 -77 286 299 185 0 chr3 65244286 65244443 -162280135 + MIR SINE MIR 60 245 -17 2277 115 3 0 chr3 65244704 65245008 -162279570 - AluSq SINE Alu -8 305 1 350 304 46 51 chr3 65246213 65246430 -162278148 + L2 LINE L2 2868 3083 -189 2285 92 0 7 chr3 65246578 65246871 -162277707 + AluSg SINE Alu 1 291 -19 2378 81 0 3 chr3 65246998 65247293 -162277285 + AluY SINE Alu 1 294 -17 456 51 0 0 chr3 65247293 65247352 -162277226 + (TA)n Simple_repeat Simple_repeat 1 59 0 750 244 58 34 chr3 65247352 65247557 -162277021 + MER63A DNA MER1_type 1 210 0 791 277 41 18 chr3 65248530 65248781 -162275797 + MIR SINE MIR 4 262 0 1585 238 148 42 chr3 65249281 65249490 -162275088 - L1ME3A LINE L1 -9 6161 5976 261 0 0 0 chr3 65249490 65249519 -162275059 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 2170 104 0 4 chr3 65249519 65249798 -162274780 - AluSg SINE Alu -32 278 1 1585 238 148 42 chr3 65249798 65249998 -162274580 - L1ME3A LINE L1 -194 5976 5799 1441 200 92 86 chr3 65249998 65250497 -162274081 + MLT1D LTR MaLR 1 502 -3 1585 238 148 42 chr3 65250497 65250712 -162273866 - L1ME3A LINE L1 -371 5799 5471 216 325 72 0 chr3 65251039 65251122 -162273456 + MIR SINE MIR 62 150 -112 1870 155 7 7 chr3 65251253 65251544 -162273034 + AluJo SINE Alu 9 299 -13 189 107 0 0 chr3 65251736 65251764 -162272814 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 692 285 26 5 chr3 65251796 65251989 -162272589 + MIR SINE MIR 10 206 -56 2420 56 0 3 chr3 65252083 65252397 -162272181 - AluY SINE Alu 0 313 1 215 146 0 24 chr3 65253567 65253608 -162270970 + (TCTCTG)n Simple_repeat Simple_repeat 6 45 0 212 294 0 0 chr3 65253808 65253859 -162270719 - L2 LINE L2 0 3313 3263 397 265 31 0 chr3 65254239 65254337 -162270241 - MLT1J2 LTR MaLR -284 166 66 2145 135 3 0 chr3 65254341 65254644 -162269934 + AluSx SINE Alu 1 304 -8 24 0 0 0 chr3 65254922 65254946 -162269632 + AT_rich Low_complexity Low_complexity 1 24 0 2027 154 7 13 chr3 65255030 65255336 -162269242 + AluJb SINE Alu 2 305 -7 1006 184 0 6 chr3 65255699 65255862 -162268716 + FAM SINE Alu 8 169 -16 214 143 0 0 chr3 65255900 65255923 -162268655 + (TTTAA)n Simple_repeat Simple_repeat 2 27 -16 2301 115 3 3 chr3 65255923 65256227 -162268351 - AluSq SINE Alu -9 304 1 214 143 0 0 chr3 65256227 65256245 -162268333 + (TTTAA)n Simple_repeat Simple_repeat 26 43 0 475 325 48 73 chr3 65256287 65256528 -162268050 - L1MC4a LINE L1 -1725 6083 5843 306 344 98 32 chr3 65256528 65256874 -162267704 - L1MB8 LINE L1 -310 5868 5500 323 248 62 48 chr3 65257380 65257525 -162267053 - MIR SINE MIR -9 253 107 249 272 88 18 chr3 65258116 65258230 -162266348 - MIR3 SINE MIR -3 205 84 243 128 0 0 chr3 65258328 65258367 -162266211 - Alu SINE Alu -233 70 32 316 229 146 0 chr3 65258584 65258680 -162265898 + MIR SINE MIR 139 248 -14 304 289 25 75 chr3 65258815 65258974 -162265604 + L2 LINE L2 3162 3312 -1 286 272 11 0 chr3 65260417 65260509 -162264069 + MER103 DNA DNA 10 102 -64 2338 88 7 0 chr3 65260642 65260937 -162263641 - AluSp SINE Alu -16 297 1 342 333 28 0 chr3 65260950 65261058 -162263520 - MIR SINE MIR -68 140 30 324 0 0 0 chr3 65261069 65261105 -162263473 + (TG)n Simple_repeat Simple_repeat 2 37 0 232 313 48 0 chr3 65261269 65261352 -162263226 - MIR SINE MIR -52 210 124 191 61 30 0 chr3 65261363 65261396 -162263182 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 6460 12 0 0 chr3 65261396 65262142 -162262436 - L1PA2 LINE L1 -16 6139 5394 2199 98 7 17 chr3 65262217 65262512 -162262066 - AluSx SINE Alu -20 292 1 378 325 9 0 chr3 65262822 65262936 -162261642 + MIR SINE MIR 88 202 -60 387 231 124 25 chr3 65263103 65263224 -162261354 - L2 LINE L2 -4 3309 3177 1955 163 0 3 chr3 65263673 65263967 -162260611 - AluJb SINE Alu -19 293 1 309 247 74 0 chr3 65264230 65264311 -162260267 - L2 LINE L2 -13 3259 3173 433 221 87 0 chr3 65264487 65264591 -162259987 + MER63 DNA MER1_type 26 764 -298 259 208 19 0 chr3 65264661 65264714 -162259864 + MIR3 SINE MIR 107 160 -48 273 339 9 0 chr3 65264882 65264994 -162259584 - L1MC4 LINE L1 -377 7665 7553 2665 43 0 0 chr3 65265298 65265599 -162258979 + AluY SINE Alu 1 301 -10 187 290 75 21 chr3 65265882 65265975 -162258603 + L3 LINE CR1 1370 1467 -110 337 377 85 27 chr3 65266346 65266712 -162257866 - L2 LINE L2 -338 2976 2590 958 327 81 10 chr3 65266835 65267245 -162257333 - L2 LINE L2 0 3313 2875 1756 167 0 11 chr3 65267826 65268096 -162256482 - AluJo SINE Alu -45 267 1 560 281 65 55 chr3 65268167 65268317 -162256261 - L1M4 LINE L1 -1869 4277 4130 2278 89 14 3 chr3 65268317 65268609 -162255969 - AluSc SINE Alu -14 295 1 560 281 65 55 chr3 65268609 65268931 -162255647 - L1M4 LINE L1 -2016 4130 3800 204 232 130 58 chr3 65269100 65269169 -162255409 - L2 LINE L2 0 3313 3240 789 265 77 37 chr3 65269233 65269719 -162254859 - MLT1K LTR MaLR -23 565 3 1983 115 4 0 chr3 65269906 65270167 -162254411 + AluSq SINE Alu 22 283 -30 291 257 24 12 chr3 65270878 65270972 -162253606 - MIR SINE MIR -62 146 59 714 258 78 9 chr3 65271124 65271341 -162253237 + MIR SINE MIR 1 232 -30 1025 237 27 27 chr3 65271487 65271744 -162252834 + MIR SINE MIR 6 262 0 2214 120 3 0 chr3 65271783 65272084 -162252494 - AluSx SINE Alu -10 302 1 297 0 0 0 chr3 65273015 65273048 -162251530 + (TG)n Simple_repeat Simple_repeat 1 33 0 288 53 0 0 chr3 65273048 65273086 -162251492 + (GA)n Simple_repeat Simple_repeat 2 39 0 1967 119 0 25 chr3 65273509 65273795 -162250783 - AluSg1 SINE Alu -6 303 25 449 136 28 153 chr3 65274271 65274339 -162250239 - MER69A DNA AcHobo -2353 173 98 1697 151 48 28 chr3 65274339 65274630 -162249948 + AluJo SINE Alu 1 297 -15 449 136 28 153 chr3 65274630 65274738 -162249840 - MER69A DNA AcHobo -2428 98 19 586 197 58 7 chr3 65274875 65275012 -162249566 - MER58A DNA MER1_type 0 144 1 2273 87 0 17 chr3 65275096 65275396 -162249182 + AluY SINE Alu 1 295 -16 7944 145 78 34 chr3 65275745 65277369 -162247209 - pTR5 LTR ERV1 0 2438 744 519 259 116 37 chr3 65277369 65277522 -162247056 + MIR SINE MIR 30 207 -55 1969 135 11 0 chr3 65277522 65277832 -162246746 + AluSx SINE Alu 1 313 0 519 259 116 37 chr3 65277832 65277893 -162246685 + MIR SINE MIR 207 262 0 212 258 41 82 chr3 65278280 65278377 -162246201 - MIR SINE MIR -70 192 100 991 133 0 106 chr3 65278447 65278665 -162245913 - MER20 DNA MER1_type -1 218 24 2170 122 0 7 chr3 65281305 65281600 -162242978 + AluSx SINE Alu 1 293 -19 255 93 0 0 chr3 65281602 65281645 -162242933 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 864 104 0 16 chr3 65281652 65281834 -162242744 + (TA)n Simple_repeat Simple_repeat 2 180 0 2259 103 3 0 chr3 65281891 65282183 -162242395 + AluSq SINE Alu 1 293 -20 375 314 146 31 chr3 65283491 65283593 -162240985 - MIR SINE MIR -4 258 169 2299 117 0 0 chr3 65283593 65283892 -162240686 - AluSq SINE Alu -14 299 1 375 314 146 31 chr3 65283892 65284015 -162240563 - MIR SINE MIR -93 169 7 2368 193 16 39 chr3 65284252 65284766 -162239812 - MLT1D LTR MaLR 0 505 4 2260 99 0 3 chr3 65284952 65285255 -162239323 - AluSq SINE Alu 0 302 1 189 0 0 0 chr3 65286255 65286276 -162238302 + (A)n Simple_repeat Simple_repeat 1 21 0 2247 121 21 27 chr3 65286311 65286649 -162237929 - MER1B DNA MER1_type 0 337 2 250 222 153 28 chr3 65287045 65287117 -162237461 + L2 LINE L2 3204 3284 -29 316 284 73 34 chr3 65289083 65289287 -162235291 - Charlie8 DNA MER1_type -2138 279 68 2216 117 0 40 chr3 65289459 65289635 -162234943 - AluSx SINE Alu -1 311 152 2566 68 0 0 chr3 65289635 65289946 -162234632 - AluY SINE Alu 0 311 1 2216 117 0 40 chr3 65289946 65290093 -162234485 - AluSx SINE Alu -160 152 1 355 318 54 0 chr3 65290093 65290222 -162234356 + MIR SINE MIR 70 205 -57 183 208 13 130 chr3 65291186 65291263 -162233315 - L2 LINE L2 -771 2543 2476 2475 97 0 0 chr3 65291603 65291903 -162232675 + AluSx SINE Alu 1 300 -12 26 0 0 0 chr3 65292108 65292134 -162232444 + AT_rich Low_complexity Low_complexity 1 26 0 240 293 36 0 chr3 65292227 65292318 -162232260 + MIR3 SINE MIR 94 190 -18 2584 76 0 3 chr3 65292432 65292746 -162231832 + AluSp SINE Alu 1 313 0 253 250 66 37 chr3 65292925 65293061 -162231517 + L1ME4a LINE L1 5955 6094 -27 1222 47 7 7 chr3 65293337 65293486 -162231092 + AluSp/q SINE Alu 156 304 -9 1740 163 139 16 chr3 65294181 65294562 -162230016 + MSTA LTR MaLR 1 428 0 468 0 0 0 chr3 65295022 65295074 -162229504 + (GA)n Simple_repeat Simple_repeat 1 52 0 2157 136 70 12 chr3 65295771 65296116 -162228462 + MLT1A1 LTR MaLR 1 365 0 1385 107 65 0 chr3 65296185 65296270 -162228308 - MER30 DNA MER1_type 0 230 152 216 0 0 0 chr3 65296270 65296294 -162228284 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1385 107 65 0 chr3 65296294 65296424 -162228154 - MER30 DNA MER1_type -78 152 1 294 237 42 51 chr3 65297304 65297422 -162227156 + MIR3 SINE MIR 58 174 -34 2043 112 26 30 chr3 65298447 65298750 -162225828 - AluSx SINE Alu -8 304 3 21 36 0 0 chr3 65298897 65298925 -162225653 + AT_rich Low_complexity Low_complexity 1 28 0 1552 198 37 0 chr3 65298940 65299213 -162225365 + AluJo SINE Alu 14 296 -16 923 254 10 5 chr3 65299362 65299571 -162225007 + MIR SINE MIR 52 261 -1 297 0 0 0 chr3 65299713 65299746 -162224832 + (CA)n Simple_repeat Simple_repeat 1 33 0 254 81 0 0 chr3 65299748 65299785 -162224793 + MER69 DNA AcHobo 2490 2526 0 309 51 0 0 chr3 65299900 65299939 -162224639 + (TTA)n Simple_repeat Simple_repeat 2 40 0 2236 92 3 0 chr3 65299953 65300235 -162224343 - AluSx SINE Alu -29 283 1 619 144 19 0 chr3 65300338 65300442 -162224136 - FRAM SINE Alu -9 167 62 293 331 55 28 chr3 65301402 65301547 -162223031 + MIR SINE MIR 7 155 -107 2338 114 0 0 chr3 65301547 65301854 -162222724 + AluSx SINE Alu 1 307 -5 257 297 245 26 chr3 65302059 65302328 -162222250 + L2 LINE L2 2649 2976 -338 602 259 65 22 chr3 65302513 65302698 -162221880 + MIR SINE MIR 60 252 -10 1755 155 54 3 chr3 65302748 65303045 -162221533 - AluJb SINE Alu 0 312 1 2358 88 0 3 chr3 65303601 65303897 -162220681 + AluSg SINE Alu 1 295 -15 485 252 73 52 chr3 65304034 65304115 -162220463 + L1ME4a LINE L1 5623 5701 -420 2104 158 0 3 chr3 65304115 65304426 -162220152 + AluJb SINE Alu 1 310 -2 1906 156 27 0 chr3 65304434 65304729 -162219849 + AluSx SINE Alu 1 303 -9 485 252 73 52 chr3 65304729 65305022 -162219556 + L1ME4a LINE L1 5707 6114 -7 1978 148 17 7 chr3 65305328 65305626 -162218952 - AluJo SINE Alu -11 301 1 236 338 12 0 chr3 65306120 65306200 -162218378 + L2 LINE L2 2670 2750 -564 553 224 37 60 chr3 65306374 65306508 -162218070 + L2 LINE L2 3138 3268 -4 219 244 0 24 chr3 65308074 65308156 -162216422 + C-rich Low_complexity Low_complexity 4 83 0 201 39 0 0 chr3 65308167 65308193 -162216385 + (CCG)n Simple_repeat Simple_repeat 3 28 0 614 241 138 0 chr3 65309258 65309403 -162215175 + MIR SINE MIR 78 242 -20 661 284 142 23 chr3 65310354 65310699 -162213879 + L2 LINE L2 2927 3312 -1 373 348 58 7 chr3 65310763 65310918 -162213660 - L3 LINE CR1 -10 1567 1405 2085 151 3 0 chr3 65311631 65311936 -162212642 - AluJb SINE Alu -6 306 1 862 315 51 14 chr3 65312041 65312393 -162212185 - L2 LINE L2 -1 3312 2948 207 100 0 0 chr3 65312881 65312911 -162211667 + (ATTG)n Simple_repeat Simple_repeat 3 32 0 326 197 0 15 chr3 65312963 65313029 -162211549 + MIR SINE MIR 82 146 -116 301 211 94 55 chr3 65313025 65313153 -162211425 - L2 LINE L2 -213 3059 2927 * 321 279 74 25 chr3 65313294 65313416 -162211162 - MIR SINE MIR -43 219 92 23 33 0 0 chr3 65314202 65314232 -162210346 + AT_rich Low_complexity Low_complexity 1 30 0 2305 105 0 3 chr3 65314394 65314699 -162209879 - AluSg SINE Alu -6 304 1 1947 128 50 3 chr3 65314707 65315004 -162209574 - AluSx SINE Alu -1 311 1 3782 162 18 30 chr3 65315153 65315787 -162208791 - L1M4 LINE L1 -493 5691 5051 2315 118 0 0 chr3 65315787 65316083 -162208495 - AluSg SINE Alu -14 296 1 3782 162 18 30 chr3 65316083 65316463 -162208115 - L1M4 LINE L1 -1133 5051 4695 2090 139 0 40 chr3 65316463 65316786 -162207792 - AluJo SINE Alu -2 310 1 3782 162 18 30 chr3 65316786 65316943 -162207635 - L1M4 LINE L1 -1489 4695 4538 1741 190 7 3 chr3 65317518 65317813 -162206765 + AluJo SINE Alu 1 296 -16 315 0 0 0 chr3 65318050 65318085 -162206493 + (TG)n Simple_repeat Simple_repeat 2 36 0 2231 117 0 7 chr3 65318241 65318541 -162206037 + AluSg1 SINE Alu 1 298 -11 312 27 0 0 chr3 65319270 65319307 -162205271 + (TG)n Simple_repeat Simple_repeat 1 37 0 555 122 12 12 chr3 65319365 65319447 -162205131 - FRAM/FAM SINE Alu -103 73 1 2626 49 0 7 chr3 65319454 65319758 -162204820 - AluY SINE Alu -9 302 1 528 256 15 19 chr3 65319879 65320064 -162204514 + MIR SINE MIR 16 261 -1 24 0 0 0 chr3 65320658 65320682 -162203896 + AT_rich Low_complexity Low_complexity 1 24 0 278 215 7 167 chr3 65320900 65321044 -162203534 - Charlie8 DNA MER1_type -2224 193 73 250 282 39 0 chr3 65321079 65321157 -162203421 - MIR3 SINE MIR -28 180 100 2052 132 21 3 chr3 65321159 65321448 -162203130 + AluSx SINE Alu 1 294 -18 434 285 44 0 chr3 65322766 65322924 -162201654 - L1ME3A LINE L1 0 6170 6006 208 159 91 23 chr3 65323809 65323853 -162200725 - L2 LINE L2 -4 3309 3263 600 235 24 18 chr3 65324525 65324691 -162199887 + MIR SINE MIR 30 196 -66 1880 156 25 0 chr3 65324958 65325241 -162199337 - AluJo SINE Alu -17 295 6 195 114 68 45 chr3 65325851 65325895 -162198683 + L2 LINE L2 3137 3181 -91 2516 173 54 4 chr3 65325912 65326393 -162198185 - MLT1D LTR MaLR 0 505 1 433 276 26 46 chr3 65326408 65326504 -162198074 + MIR SINE MIR 12 105 -157 2152 102 3 0 chr3 65326504 65326807 -162197771 - AluSc SINE Alu -5 304 1 433 276 26 46 chr3 65326807 65326862 -162197716 + MIR SINE MIR 105 160 -102 329 75 0 0 chr3 65326863 65326903 -162197675 + Alu SINE Alu 3 42 -260 483 229 8 8 chr3 65327124 65327255 -162197323 - FLAM_C SINE Alu -2 131 1 2039 85 11 7 chr3 65327316 65327638 -162196940 - AluY SINE Alu 0 323 1 23 0 0 0 chr3 65327674 65327697 -162196881 + AT_rich Low_complexity Low_complexity 1 23 0 2128 142 51 53 chr3 65327778 65328193 -162196385 - MLT2D LTR ERVL 0 414 1 2124 105 20 3 chr3 65328245 65328549 -162196029 + AluSx SINE Alu 3 311 -1 624 183 130 0 chr3 65328752 65328867 -162195711 - FLAM_A SINE Alu -3 130 1 507 216 73 5 chr3 65329175 65329316 -162195262 - L1MB7 LINE L1 -14 6320 6036 2002 117 3 23 chr3 65329322 65329629 -162194949 - AluSx SINE Alu -11 301 1 1194 266 17 44 chr3 65329663 65329848 -162194730 + L2 LINE L2 1645 1833 -1481 2544 118 14 88 chr3 65329848 65330194 -162194384 - L1MB2 LINE L1 -7 6164 5794 1656 155 54 0 chr3 65330194 65330490 -162194088 + AluJb SINE Alu 1 312 0 2544 118 14 88 chr3 65330490 65330512 -162194066 - L1MB2 LINE L1 -377 5794 5772 1588 184 13 7 chr3 65330512 65330816 -162193762 - AluJb SINE Alu -5 307 2 2544 118 14 88 chr3 65330816 65330947 -162193631 - L1MB2 LINE L1 -399 5772 5701 1194 266 17 44 chr3 65330947 65331171 -162193407 + L2 LINE L2 1833 2043 -1271 1285 243 180 17 chr3 65331173 65331948 -162192630 + L2 LINE L2 2395 3304 -9 305 125 18 0 chr3 65332048 65332104 -162192474 + (TG)n Simple_repeat Simple_repeat 2 58 0 414 229 143 57 chr3 65332933 65333073 -162191505 + MIR SINE MIR 107 258 -4 2717 148 56 63 chr3 65333105 65333343 -162191235 + L1MB4 LINE L1 5597 5835 -345 838 219 0 0 chr3 65333343 65333494 -162191084 + FRAM SINE Alu 4 154 -12 2717 148 56 63 chr3 65333494 65333843 -162190735 + L1MB4 LINE L1 5835 6180 0 1111 178 87 4 chr3 65334484 65334725 -162189853 - AluJb SINE Alu -15 297 37 586 291 52 12 chr3 65334861 65335033 -162189545 - MIR SINE MIR -25 237 59 1733 150 0 52 chr3 65335713 65336039 -162188539 - AluJo SINE Alu 0 312 4 301 219 28 28 chr3 65336059 65336135 -162188443 - AluJo SINE Alu -114 188 122 306 308 170 11 chr3 65336289 65336471 -162188107 + MIR SINE MIR 9 219 -43 731 258 38 0 chr3 65336636 65336822 -162187756 + MIR SINE MIR 45 237 -25 210 284 137 44 chr3 65337241 65337398 -162187180 - MIR SINE MIR -12 250 72 823 148 0 15 chr3 65337398 65337533 -162187045 + FLAM_C SINE Alu 1 133 0 210 284 137 44 chr3 65337533 65337558 -162187020 - MIR SINE MIR -190 72 51 2196 100 3 0 chr3 65338418 65338717 -162185861 - AluSq SINE Alu -13 300 1 529 354 204 6 chr3 65339566 65339928 -162184650 + L3b LINE CR1 1139 1572 -11 2395 48 3 3 chr3 65340319 65340613 -162183965 + AluY SINE Alu 1 294 -17 721 256 123 51 chr3 65340876 65341195 -162183383 + Charlie8 DNA MER1_type 1 328 -2089 257 310 50 0 chr3 65341574 65341674 -162182904 + MARNA DNA Mariner 246 350 -236 2148 88 20 3 chr3 65344738 65345032 -162179546 + AluSx SINE Alu 1 299 -13 865 266 35 18 chr3 65345268 65345554 -162179024 - MER46C DNA MER2_type -4 334 44 386 258 33 0 chr3 65347681 65347801 -162176777 + L1ME4a LINE L1 5578 5701 -420 319 293 181 64 chr3 65347810 65348124 -162176454 + L1ME4a LINE L1 5767 6117 -4 394 309 99 5 chr3 65348612 65348835 -162175743 + L2 LINE L2 1618 1861 -1453 650 233 7 0 chr3 65349739 65349885 -162174693 - L1ME3 LINE L1 -2 6160 6014 1545 154 10 44 chr3 65349988 65350286 -162174292 + AluJo SINE Alu 1 288 -24 314 202 8 121 chr3 65351573 65351697 -162172881 + L1ME4a LINE L1 5988 6097 -24 1431 89 5 0 chr3 65351723 65351914 -162172664 - AluSq SINE Alu -20 293 102 643 270 42 12 chr3 65353047 65353250 -162171328 + MIR SINE MIR 37 253 -9 2185 104 3 0 chr3 65353266 65353563 -162171015 + AluSx SINE Alu 1 298 -14 204 135 0 0 chr3 65353563 65353600 -162170978 + (TA)n Simple_repeat Simple_repeat 1 37 0 2385 67 0 3 chr3 65355108 65355407 -162169171 + AluY SINE Alu 1 298 -13 508 271 163 20 chr3 65355735 65355938 -162168640 + MIR SINE MIR 17 248 -14 23 0 0 0 chr3 65356060 65356083 -162168495 + AT_rich Low_complexity Low_complexity 1 23 0 2135 106 17 0 chr3 65356244 65356546 -162168032 - AluSg SINE Alu -3 307 1 788 164 178 146 chr3 65356551 65356702 -162167876 - AluJo SINE Alu -10 292 126 2150 120 0 0 chr3 65356702 65357010 -162167568 - AluSx SINE Alu -4 308 1 788 164 178 146 chr3 65357010 65357139 -162167439 - AluJo SINE Alu -176 126 3 212 0 36 0 chr3 65357327 65357355 -162167223 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2088 90 7 0 chr3 65357360 65357639 -162166939 - AluSg SINE Alu -29 281 1 2176 82 40 13 chr3 65359883 65360186 -162164392 + AluY SINE Alu 1 311 0 854 189 27 16 chr3 65360415 65360600 -162163978 - MIR SINE MIR -68 194 8 228 268 98 24 chr3 65361162 65361244 -162163334 - MIR SINE MIR -89 173 86 2141 119 3 0 chr3 65361420 65361731 -162162847 - AluSp SINE Alu -1 312 1 1861 98 14 28 chr3 65361912 65362197 -162162381 - AluSc SINE Alu -27 282 2 1153 242 42 14 chr3 65362204 65362399 -162162179 - L1M4 LINE L1 -823 5323 5112 2115 128 0 0 chr3 65362399 65362711 -162161867 - AluSx SINE Alu 0 312 1 1153 242 42 14 chr3 65362711 65362871 -162161707 - L1M4 LINE L1 -1034 5112 4958 214 314 48 19 chr3 65363240 65363345 -162161233 - L2 LINE L2 -34 3279 3172 2176 99 7 3 chr3 65363355 65363658 -162160920 + AluSg SINE Alu 1 304 -6 199 332 111 21 chr3 65363678 65363868 -162160710 - L2 LINE L2 -252 3061 2855 302 123 14 96 chr3 65363939 65364012 -162160566 - FLAM SINE Alu 0 133 67 2029 127 10 0 chr3 65364352 65364660 -162159918 - AluSx SINE Alu -1 311 1 287 322 0 0 chr3 65364767 65364854 -162159724 + L2 LINE L2 3155 3241 -31 347 266 208 17 chr3 65364885 65365058 -162159520 - L1MC5 LINE L1 -36 7925 7720 5811 24 5 1 chr3 65365734 65366407 -162158171 + L1PA4 LINE L1 5481 6155 0 1036 90 136 0 chr3 65366536 65366691 -162157887 + MER30 DNA MER1_type 1 176 -54 257 362 43 0 chr3 65366784 65366878 -162157700 + MIR SINE MIR 8 105 -157 341 240 13 0 chr3 65367279 65367354 -162157224 - L2 LINE L2 -2 3270 3195 614 196 126 123 chr3 65367364 65367611 -162156967 + LTR37B LTR ERV1 5 256 -212 2050 106 0 0 chr3 65367611 65367914 -162156664 - AluSx SINE Alu 0 303 1 614 196 126 123 chr3 65367914 65367966 -162156612 + LTR37B LTR ERV1 256 306 -162 405 0 0 0 chr3 65368024 65368069 -162156509 + (TG)n Simple_repeat Simple_repeat 2 46 0 241 121 0 121 chr3 65368080 65368138 -162156440 + LTR37B LTR ERV1 342 392 -76 * 380 196 15 65 chr3 65368133 65368258 -162156320 + LTR37B LTR ERV1 270 435 -33 324 83 0 0 chr3 65368376 65368424 -162156154 + (A)n Simple_repeat Simple_repeat 1 48 0 2073 123 0 3 chr3 65368826 65369135 -162155443 - AluSx SINE Alu -4 308 1 2003 138 0 0 chr3 65369364 65369675 -162154903 - AluJo SINE Alu -1 311 1 273 287 40 20 chr3 65369675 65369776 -162154802 + MIR SINE MIR 86 188 -74 377 294 76 55 chr3 65370166 65370206 -162154372 + Charlie8 DNA MER1_type 35 73 -2344 2284 84 0 0 chr3 65370206 65370502 -162154076 + AluSg SINE Alu 1 296 -14 377 294 76 55 chr3 65370502 65370699 -162153879 + Charlie8 DNA MER1_type 73 277 -2140 1248 246 24 3 chr3 65372314 65372603 -162151975 - AluSq SINE Alu -8 295 1 239 330 0 33 chr3 65372603 65372684 -162151894 + MIR3 SINE MIR 102 181 -27 28 0 0 0 chr3 65372707 65372735 -162151843 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 65373083 65373107 -162151471 + AT_rich Low_complexity Low_complexity 1 24 0 382 272 89 25 chr3 65373909 65374067 -162150511 + L1ME3 LINE L1 5695 5862 -300 1640 179 0 0 chr3 65374099 65374372 -162150206 + AluJo SINE Alu 1 273 -39 272 136 0 0 chr3 65574863 65574907 -161949671 - L1M3 LINE L1 -637 5531 5488 417 153 0 0 chr3 65574907 65574979 -161949599 + CT-rich Low_complexity Low_complexity 4 75 0 2204 154 1 0 chr3 65574986 65575465 -161949113 - L1M3 LINE L1 -712 5468 4989 905 179 0 0 chr3 65575488 65575628 -161948950 - FRAM SINE Alu -37 139 1 1213 203 60 11 chr3 65575628 65575909 -161948669 - L1M3 LINE L1 -1153 4993 4699 1487 150 36 11 chr3 65576037 65576311 -161948267 + L1MB7 LINE L1 5878 6158 -26 839 217 54 5 chr3 65576341 65576544 -161948034 + L1MC4 LINE L1 6866 7078 -964 569 189 90 8 chr3 65576568 65576690 -161947888 + FLAM_C SINE Alu 1 132 -1 24 0 0 0 chr3 65576690 65576714 -161947864 + AT_rich Low_complexity Low_complexity 1 24 0 2238 237 50 2 chr3 65576714 65577238 -161947340 + MLT1F1 LTR MaLR 12 560 -7 1282 226 219 12 chr3 65577239 65577731 -161946847 + L1MC4 LINE L1 7265 7858 -184 236 125 0 0 chr3 65577831 65577863 -161946715 + Alu SINE Alu 223 254 -49 553 210 0 0 chr3 65577900 65578000 -161946578 - AluJ/FLAM SINE Alu -211 101 2 1377 150 73 83 chr3 65578045 65578345 -161946233 - AluJb SINE Alu -15 297 1 2179 114 0 10 chr3 65578353 65578643 -161945935 - AluSg SINE Alu -23 287 1 1805 116 0 0 chr3 65578652 65578894 -161945684 - AluSg1 SINE Alu -10 299 58 2420 86 0 3 chr3 65579094 65579398 -161945180 + AluSq SINE Alu 1 303 -10 194 255 92 31 chr3 65579807 65579905 -161944673 - L2 LINE L2 -1025 2289 2186 2375 101 3 0 chr3 65579917 65580214 -161944364 + AluSx SINE Alu 1 298 -14 2164 124 0 7 chr3 65580239 65580538 -161944040 + AluSg SINE Alu 1 297 -13 2161 110 4 0 chr3 65580664 65580974 -161943604 + AluSp SINE Alu 1 311 0 621 191 110 0 chr3 65581018 65581154 -161943424 + Tigger7 DNA MER2_type 69 220 -331 3466 99 8 14 chr3 65581162 65581645 -161942933 - MER1A DNA MER1_type -49 480 1 1689 138 10 41 chr3 65581646 65581848 -161942730 + Tigger7 DNA MER2_type 215 407 -326 1658 164 52 7 chr3 65581848 65582135 -161942443 - AluJb SINE Alu -12 300 1 1689 138 10 41 chr3 65582135 65582223 -161942355 + Tigger7 DNA MER2_type 407 496 -237 732 158 8 30 chr3 65582323 65582456 -161942122 + FRAM SINE Alu 34 163 -13 24 0 0 0 chr3 65582486 65582510 -161942068 + AT_rich Low_complexity Low_complexity 1 24 0 253 302 12 23 chr3 65582524 65582610 -161941968 - MER5A DNA MER1_type -93 96 12 307 268 55 39 chr3 65583040 65583167 -161941411 - MLT1J LTR MaLR -4 507 379 237 265 60 24 chr3 65583193 65583276 -161941302 - MLT1J LTR MaLR -202 309 224 1317 205 28 21 chr3 65583284 65583595 -161940983 + AluJb SINE Alu 5 312 0 376 196 0 28 chr3 65583778 65583885 -161940693 + (TATATG)n Simple_repeat Simple_repeat 4 107 0 919 136 0 0 chr3 65583892 65584024 -161940554 - FLAM_C SINE Alu -1 132 1 1673 181 16 47 chr3 65584065 65584451 -161940127 - MLT1A2 LTR MaLR 0 374 1 1192 178 37 37 chr3 65584451 65584507 -161940071 - MLT1A2-int LTR MaLR 0 1735 1680 2522 63 0 0 chr3 65584507 65584807 -161939771 + AluSg SINE Alu 3 302 -8 1192 178 37 37 chr3 65584807 65585020 -161939558 - MLT1A2-int LTR MaLR -54 1681 1466 528 226 9 9 chr3 65585020 65585126 -161939452 - Tigger7 DNA MER2_type 0 2491 2386 2280 81 0 17 chr3 65585318 65585615 -161938963 - AluSc SINE Alu -17 292 1 2377 75 14 0 chr3 65585944 65586236 -161938342 - AluSp SINE Alu -12 301 6 1811 148 44 3 chr3 65586625 65586922 -161937656 + AluJo SINE Alu 1 309 -3 813 142 8 8 chr3 65586994 65587121 -161937457 + FLAM_C SINE Alu 1 127 -16 330 258 67 0 chr3 65587721 65587810 -161936768 + L2 LINE L2 2553 2647 -667 1391 184 4 0 chr3 65587830 65588058 -161936520 - MER68 LTR ERV1 0 562 334 2090 115 35 0 chr3 65588058 65588344 -161936234 + AluSq SINE Alu 1 296 -17 351 165 32 6 chr3 65588711 65588869 -161935709 + (TA)n Simple_repeat Simple_repeat 2 163 0 43 20 0 0 chr3 65588871 65588921 -161935657 + AT_rich Low_complexity Low_complexity 1 50 0 216 0 0 0 chr3 65589306 65589330 -161935248 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2235 106 0 3 chr3 65589585 65589877 -161934701 + AluSg SINE Alu 1 291 -19 1880 132 3 58 chr3 65590192 65590503 -161934075 - AluSx SINE Alu -18 294 1 392 206 88 10 chr3 65590984 65591086 -161933492 + MIR SINE MIR 102 211 -51 255 346 10 10 chr3 65591098 65591199 -161933379 - L2 LINE L2 -34 3238 3138 227 188 104 0 chr3 65591420 65591468 -161933110 - L2 LINE L2 -4 3268 3216 504 280 16 6 chr3 65591486 65591668 -161932910 + MIR SINE MIR 75 258 -4 697 164 139 67 chr3 65591684 65591765 -161932813 - MER45A DNA AcHobo -1403 178 104 2124 119 10 0 chr3 65591765 65592058 -161932520 + AluSg SINE Alu 1 296 -14 2435 80 3 3 chr3 65592062 65592362 -161932216 + AluSp SINE Alu 1 300 -13 697 164 139 67 chr3 65592362 65592440 -161932138 - MER45A DNA AcHobo -1479 102 2 302 295 123 0 chr3 65592617 65592739 -161931839 - L1MC4 LINE L1 -3 8039 7903 834 144 8 0 chr3 65592739 65592864 -161931714 - FLAM_C SINE Alu -14 129 4 1776 143 21 35 chr3 65593041 65593370 -161931208 + AluSx SINE Alu 1 325 0 1071 79 30 12 chr3 65593543 65593707 -161930871 - AluSx SINE Alu -109 203 37 2360 241 17 11 chr3 65593750 65594289 -161930289 - MLT1F LTR MaLR 0 542 1 1902 126 70 0 chr3 65594352 65594638 -161929940 - AluJb SINE Alu -6 306 1 5544 113 36 88 chr3 65594653 65595742 -161928836 - L1MA7 LINE L1 -6 6285 5254 2491 79 3 0 chr3 65595750 65596054 -161928524 - AluSp SINE Alu -8 305 1 767 173 0 43 chr3 65597063 65597202 -161927376 + FLAM_C SINE Alu 1 133 0 1134 147 6 0 chr3 65597237 65597400 -161927178 + AluSg/x SINE Alu 124 287 -23 392 240 72 16 chr3 65597400 65597525 -161927053 + Charlie1b DNA MER1_type 97 228 -295 1823 149 0 14 chr3 65597693 65597982 -161926596 + AluJb SINE Alu 1 285 -27 180 0 0 0 chr3 65598018 65598038 -161926540 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2011 120 4 0 chr3 65598122 65598420 -161926158 + AluSx SINE Alu 6 304 0 1166 280 116 31 chr3 65598425 65598910 -161925668 + MLT1K LTR MaLR 61 586 -2 2017 142 0 22 chr3 65599014 65599153 -161925425 + AluSx SINE Alu 1 142 -170 2301 88 0 0 chr3 65599153 65599481 -161925097 + AluY SINE Alu 1 328 0 2017 142 0 22 chr3 65599481 65599651 -161924927 + AluSx SINE Alu 142 304 -8 2199 74 19 7 chr3 65599753 65600062 -161924516 + L1MA3 LINE L1 5734 6046 -259 789 107 0 9 chr3 65600068 65600180 -161924398 + L1MA2 LINE L1 6190 6300 -4 1153 387 0 43 chr3 65600201 65600506 -161924072 - AluSx SINE Alu -9 293 2 951 168 71 30 chr3 65600508 65600653 -161923925 - Charlie1 DNA MER1_type -66 2695 2557 1448 161 0 29 chr3 65600653 65600896 -161923682 - MER46A DNA MER2_type 0 236 1 951 168 71 30 chr3 65600896 65601018 -161923560 - Charlie1 DNA MER1_type -204 2557 2417 333 178 164 0 chr3 65601068 65601141 -161923437 - Charlie1 DNA MER1_type -327 2434 2350 350 213 0 0 chr3 65601151 65601212 -161923366 - Charlie1 DNA MER1_type -2700 61 1 237 206 59 15 chr3 65601302 65601370 -161923208 - MER5A DNA MER1_type -83 106 36 7155 118 19 19 chr3 65601719 65602309 -161922269 + Tigger1 DNA MER2_type 2 592 -1826 773 172 0 8 chr3 65602309 65602443 -161922135 - FLAM_C SINE Alu 0 133 1 7155 118 19 19 chr3 65602443 65602935 -161921643 + Tigger1 DNA MER2_type 592 1083 -1335 1726 191 10 0 chr3 65602935 65603238 -161921340 + AluJo SINE Alu 1 306 -6 2090 125 6 16 chr3 65603271 65603584 -161920994 - AluSx SINE Alu -2 310 1 2268 90 17 0 chr3 65604252 65604541 -161920037 - AluSc SINE Alu -15 294 1 455 188 43 87 chr3 65604908 65605046 -161919532 - L1ME2 LINE L1 -70 6094 5963 1773 152 14 24 chr3 65605366 65605656 -161918922 + AluJo SINE Alu 1 287 -25 1035 92 0 0 chr3 65605677 65605807 -161918771 + AluSq/x SINE Alu 5 134 -178 479 262 77 88 chr3 65605827 65606058 -161918520 - L1ME4a LINE L1 -123 5998 5773 2176 119 3 0 chr3 65606058 65606353 -161918225 + AluSq SINE Alu 1 296 -17 479 262 77 88 chr3 65606353 65606563 -161918015 - L1ME4a LINE L1 -348 5773 5562 193 362 52 26 chr3 65606766 65606882 -161917696 - L2 LINE L2 -8 3264 3146 1112 153 17 11 chr3 65607006 65607183 -161917395 + AluJo SINE Alu 1 178 -134 285 51 0 0 chr3 65607204 65607243 -161917335 + (A)n Simple_repeat Simple_repeat 1 39 0 380 241 138 35 chr3 65607578 65607752 -161916826 - L1MC4a LINE L1 -1947 5861 5670 2415 92 0 0 chr3 65607863 65608166 -161916412 + AluSg SINE Alu 1 303 -7 2183 131 7 3 chr3 65608170 65608476 -161916102 + AluJb SINE Alu 1 307 -5 1790 130 10 3 chr3 65608504 65608797 -161915781 + L1MA7 LINE L1 5997 6291 0 615 210 129 5 chr3 65609163 65609349 -161915229 - L1MC4 LINE L1 -2 8040 7832 2234 99 34 0 chr3 65609349 65609641 -161914937 + AluSx SINE Alu 1 302 -10 253 293 146 0 chr3 65609650 65609732 -161914846 + MLT1K LTR MaLR 3 96 -492 21 36 0 0 chr3 65610637 65610665 -161913913 + GC_rich Low_complexity Low_complexity 1 28 0 2836 88 33 84 chr3 65610716 65611350 -161913228 + SVA Other Other 393 868 -603 1252 111 4 115 chr3 65611450 65611693 -161912885 + AluSq SINE Alu 98 313 0 2913 117 34 72 chr3 65611701 65612182 -161912396 - L1MA4 LINE L1 -9 6291 5832 2002 136 51 0 chr3 65612182 65612477 -161912101 - AluSg SINE Alu 0 310 1 2913 117 34 72 chr3 65612477 65612553 -161912025 - L1MA4 LINE L1 -468 5832 5755 2168 131 0 0 chr3 65612619 65612925 -161911653 - AluSx SINE Alu -6 306 1 2439 63 0 20 chr3 65613883 65614183 -161910395 - AluY SINE Alu -17 294 1 1154 206 109 96 chr3 65614700 65615233 -161909345 + MER34B LTR ERV1 5 544 -21 2212 119 7 0 chr3 65615376 65615686 -161908892 - AluSx SINE Alu 0 312 1 2457 86 0 0 chr3 65615688 65615992 -161908586 - AluY SINE Alu -7 304 1 2162 116 3 0 chr3 65616254 65616546 -161908032 + AluSx SINE Alu 1 293 -19 281 157 0 20 chr3 65617310 65617361 -161907217 - MER5A DNA MER1_type -114 75 26 2113 130 0 17 chr3 65617362 65617662 -161906916 + AluSx SINE Alu 1 295 -17 1058 171 0 6 chr3 65618045 65618221 -161906357 + AluJb SINE Alu 136 310 -2 2254 110 0 0 chr3 65618353 65618644 -161905934 + AluSx SINE Alu 6 296 -16 435 103 0 0 chr3 65618651 65618709 -161905869 - Alu SINE Alu -19 293 236 227 257 178 0 chr3 65619013 65619114 -161905464 - MIR SINE MIR 0 262 144 508 179 185 49 chr3 65619114 65619228 -161905350 - L2 LINE L2 0 3313 3216 2300 96 0 46 chr3 65619228 65619551 -161905027 + AluSx SINE Alu 1 308 -4 508 179 185 49 chr3 65619551 65619620 -161904958 - L2 LINE L2 -97 3216 3105 676 245 281 36 chr3 65619698 65620139 -161904439 - L2 LINE L2 -354 2960 2412 2297 106 0 3 chr3 65620398 65620699 -161903879 - AluSg SINE Alu -10 300 1 2003 130 0 7 chr3 65620704 65621012 -161903566 - AluSx SINE Alu 0 306 1 411 281 70 34 chr3 65621389 65621710 -161902868 + L1ME4a LINE L1 5787 6120 -1 27 0 0 0 chr3 65622632 65622659 -161901919 + AT_rich Low_complexity Low_complexity 1 27 0 2256 86 21 3 chr3 65622702 65622992 -161901586 + AluSx SINE Alu 2 296 -16 2326 89 3 0 chr3 65623123 65623414 -161901164 + AluSp SINE Alu 1 292 -21 2050 120 0 3 chr3 65623546 65623905 -161900673 + AluSx SINE Alu 1 358 0 932 128 0 0 chr3 65623949 65624082 -161900496 + AluSg SINE Alu 1 133 -177 1545 95 0 45 chr3 65624082 65624304 -161900274 + AluSg SINE Alu 1 212 -98 1092 73 0 0 chr3 65624786 65624923 -161899655 - AluSp/q SINE Alu -2 311 175 859 175 184 2 chr3 65625090 65625314 -161899264 - L1ME2 LINE L1 0 6164 5908 686 156 31 0 chr3 65625315 65625443 -161899135 - L1ME2 LINE L1 -318 5856 5725 1364 158 4 17 chr3 65625443 65625621 -161898957 - AluJo SINE Alu 0 312 136 2320 82 3 3 chr3 65625621 65625913 -161898665 - AluY SINE Alu -19 292 1 1364 158 4 17 chr3 65625913 65625968 -161898610 - AluJo SINE Alu -176 136 82 2105 189 46 9 chr3 65625970 65626431 -161898147 - L1ME2 LINE L1 -447 5731 5254 1614 188 32 10 chr3 65626454 65626762 -161897816 - MLT1A1 LTR MaLR 0 365 51 1018 178 44 0 chr3 65626771 65626996 -161897582 - L1ME2 LINE L1 -970 5176 4942 184 291 0 78 chr3 65627285 65627388 -161897190 + L2 LINE L2 2759 2853 -461 261 288 90 9 chr3 65627415 65627526 -161897052 - MIR SINE MIR -95 167 48 1492 208 71 49 chr3 65627916 65627968 -161896610 - MLT1A2 LTR MaLR 0 374 325 1708 177 14 0 chr3 65627968 65628271 -161896307 - AluSx SINE Alu 0 307 1 1492 208 71 49 chr3 65628271 65628583 -161895995 - MLT1A2 LTR MaLR -49 325 1 432 267 52 73 chr3 65629336 65629366 -161895212 - MLT1K LTR MaLR -9 579 550 1746 167 19 32 chr3 65629366 65629677 -161894901 + AluJb SINE Alu 1 307 -5 432 267 52 73 chr3 65629677 65629837 -161894741 - MLT1K LTR MaLR -38 550 393 2310 125 0 0 chr3 65629973 65630285 -161894293 + AluSx SINE Alu 1 312 0 1967 145 13 7 chr3 65630698 65631001 -161893577 - AluSq SINE Alu -8 305 1 469 138 0 50 chr3 65631010 65631090 -161893488 - AluJ/FRAM SINE Alu -20 292 217 1212 88 0 44 chr3 65631927 65631943 -161892635 - AluY SINE Alu 0 311 296 3368 88 4 31 chr3 65631943 65632421 -161892157 - L1PA14 LINE L1 0 6161 5697 1711 114 0 35 chr3 65632424 65632710 -161891868 - AluSg SINE Alu 0 315 39 1212 88 0 44 chr3 65632710 65632869 -161891709 - AluY SINE Alu -17 294 139 1466 188 75 3 chr3 65633255 65633537 -161891041 + AluJo SINE Alu 1 302 -10 2057 107 0 88 chr3 65633537 65633697 -161890881 + AluSx SINE Alu 2 120 -192 2161 77 3 55 chr3 65633697 65634008 -161890570 + AluY SINE Alu 1 295 -16 2057 107 0 88 chr3 65634008 65634175 -161890403 + AluSx SINE Alu 120 300 -12 234 194 16 48 chr3 65634801 65634863 -161889715 - L2 LINE L2 0 3313 3254 207 0 0 0 chr3 65635143 65635166 -161889412 + (A)n Simple_repeat Simple_repeat 1 23 0 2322 75 13 3 chr3 65635423 65635729 -161888849 + AluSp SINE Alu 1 309 -4 2208 81 20 20 chr3 65636839 65637137 -161887441 + AluSg SINE Alu 1 298 -12 443 266 55 76 chr3 65637169 65637406 -161887172 - MIR SINE MIR -17 245 14 889 114 11 86 chr3 65637741 65637916 -161886662 + FAM SINE Alu 1 42 -7 249 250 182 61 chr3 65638265 65638397 -161886181 + MIR3 SINE MIR 19 166 -42 1742 174 3 7 chr3 65638492 65638780 -161885798 + AluJo SINE Alu 1 287 -25 523 165 0 0 chr3 65638885 65638964 -161885614 + AluJb SINE Alu 209 287 -25 1612 292 62 40 chr3 65639394 65639517 -161885061 - L3 LINE CR1 -11 1566 1447 1910 136 0 0 chr3 65639517 65639797 -161884781 + AluSx SINE Alu 21 300 -12 2031 132 0 7 chr3 65639798 65640130 -161884448 + AluSx SINE Alu 1 330 0 1612 292 62 40 chr3 65640130 65640676 -161883902 - L3 LINE CR1 -129 1448 878 1658 135 0 4 chr3 65641191 65641428 -161883150 + AluSx SINE Alu 1 236 -76 2561 58 0 26 chr3 65641636 65641949 -161882629 - AluY SINE Alu -6 305 1 2420 78 0 3 chr3 65642731 65643026 -161881552 - AluSg SINE Alu -15 295 2 2082 165 11 3 chr3 65643152 65643504 -161881074 + MER46B DNA MER2_type 3 232 -4 2071 193 35 19 chr3 65643823 65644254 -161880324 - L1ME1 LINE L1 -108 6058 5621 2154 123 0 3 chr3 65644369 65644669 -161879909 + AluSx SINE Alu 1 299 -13 242 244 221 12 chr3 65644739 65644825 -161879753 - MER5B DNA MER1_type 0 178 75 318 267 108 36 chr3 65644897 65645204 -161879374 - L1MC5 LINE L1 -30 7931 7603 23 33 0 0 chr3 65645290 65645320 -161879258 + AT_rich Low_complexity Low_complexity 1 30 0 2358 91 0 0 chr3 65645649 65645946 -161878632 + AluY SINE Alu 1 297 -14 1674 150 11 21 chr3 65645956 65646236 -161878342 + AluJo SINE Alu 15 291 -21 1697 147 48 27 chr3 65647887 65648180 -161876398 - AluJb SINE Alu -13 299 1 1326 183 9 0 chr3 65648206 65648425 -161876153 + AluJb SINE Alu 87 307 -5 21 0 0 0 chr3 65648535 65648556 -161876022 + AT_rich Low_complexity Low_complexity 1 21 0 1836 169 0 38 chr3 65649871 65650191 -161874387 - AluJb SINE Alu 0 312 5 31 26 0 0 chr3 65650486 65650524 -161874054 + AT_rich Low_complexity Low_complexity 1 38 0 1995 107 0 95 chr3 65650529 65650867 -161873711 + AluSq SINE Alu 1 306 -7 2199 112 3 3 chr3 65650877 65651182 -161873396 + AluSg1 SINE Alu 1 305 -4 203 179 0 0 chr3 65651448 65651487 -161873091 + (TA)n Simple_repeat Simple_repeat 2 40 0 276 335 86 5 chr3 65652111 65652247 -161872331 - L2 LINE L2 -2 3311 3153 2313 107 0 0 chr3 65652247 65652546 -161872032 + AluSc SINE Alu 1 299 -10 276 335 86 5 chr3 65652546 65652606 -161871972 - L2 LINE L2 -160 3153 3099 365 268 140 13 chr3 65653019 65653176 -161871402 + MIR SINE MIR 86 262 0 23 33 0 0 chr3 65653399 65653429 -161871149 + AT_rich Low_complexity Low_complexity 1 30 0 391 366 12 12 chr3 65653993 65654154 -161870424 - MIR3 SINE MIR -17 191 31 419 224 7 32 chr3 65654208 65654340 -161870238 + L1ME3A LINE L1 5833 5964 -206 298 286 0 0 chr3 65654427 65654511 -161870067 + MIR3 SINE MIR 119 202 -6 782 132 18 66 chr3 65654765 65654785 -161869793 - L1M4 LINE L1 -378 5806 5787 2331 100 3 0 chr3 65654785 65655084 -161869494 + AluSp SINE Alu 1 300 -13 782 132 18 66 chr3 65655084 65655230 -161869348 - L1M4 LINE L1 -397 5787 5648 * 1177 174 14 14 chr3 65655228 65655405 -161869173 - L1MC4 LINE L1 -1161 6881 6702 342 67 0 0 chr3 65655405 65655450 -161869128 + (TG)n Simple_repeat Simple_repeat 2 46 0 1177 174 14 14 chr3 65655450 65655479 -161869099 - L1MC4 LINE L1 -1339 6703 6675 2768 79 14 11 chr3 65655568 65655925 -161868653 - L1PB1 LINE L1 0 6151 5791 180 0 0 0 chr3 65655925 65655945 -161868633 + (TG)n Simple_repeat Simple_repeat 2 21 0 5598 157 23 14 chr3 65656213 65657866 -161866712 - L1PB1 LINE L1 -360 5791 4128 256 200 14 43 chr3 65659667 65659737 -161864841 - MIR SINE MIR -75 187 120 213 306 59 24 chr3 65659855 65659940 -161864638 - MIR SINE MIR -169 93 6 2279 109 0 0 chr3 65660383 65660686 -161863892 - AluSg SINE Alu -7 303 1 809 124 73 154 chr3 65660690 65660813 -161863765 - MER68 LTR ERV1 -291 271 174 1917 164 57 23 chr3 65660813 65661166 -161863412 + MLT1A1 LTR MaLR 1 365 0 809 124 73 154 chr3 65661166 65661276 -161863302 - MER68 LTR ERV1 -388 174 57 1958 168 0 3 chr3 65661282 65661458 -161863120 - AluJo SINE Alu -3 309 133 2271 124 0 0 chr3 65661458 65661756 -161862822 - AluSx SINE Alu -14 298 1 1958 168 0 3 chr3 65661756 65661889 -161862689 - AluJo SINE Alu -179 133 1 1621 136 20 125 chr3 65661912 65662265 -161862313 - AluYb8 SINE Alu -2 316 1 1157 74 0 0 chr3 65662265 65662400 -161862178 - AluSq/x SINE Alu -178 135 1 296 295 232 19 chr3 65662456 65662663 -161861915 + L2 LINE L2 2659 2909 -405 915 81 0 0 chr3 65662691 65662802 -161861776 + AluY SINE Alu 20 130 -181 855 194 16 43 chr3 65662802 65662988 -161861590 + MER3 DNA MER1_type 19 199 -10 2123 134 0 16 chr3 65663175 65663488 -161861090 + AluSx SINE Alu 3 310 -2 284 301 71 26 chr3 65664186 65664299 -161860279 + L2 LINE L2 2933 3050 -222 1191 204 136 41 chr3 65664311 65664485 -161860093 + MLT1C LTR MaLR 1 157 -310 2390 90 0 13 chr3 65664485 65664797 -161859781 + AluSq SINE Alu 1 308 -5 1191 204 136 41 chr3 65664797 65664814 -161859764 + MLT1C LTR MaLR 157 171 -296 1563 176 20 26 chr3 65664814 65665120 -161859458 + AluJb SINE Alu 1 304 -8 1191 204 136 41 chr3 65665120 65665153 -161859425 + MLT1C LTR MaLR 171 199 -268 392 0 21 0 chr3 65665153 65665201 -161859377 + (TG)n Simple_repeat Simple_repeat 2 50 0 1191 204 136 41 chr3 65665201 65665386 -161859192 + MLT1C LTR MaLR 199 451 -16 3638 214 33 33 chr3 65665400 65665723 -161858855 - MER21B LTR ERV1 -51 812 490 2265 99 0 0 chr3 65665723 65666030 -161858548 - AluSx SINE Alu 0 307 1 3638 214 33 33 chr3 65666030 65666516 -161858062 - MER21B LTR ERV1 -372 491 2 288 287 51 56 chr3 65666550 65666647 -161857931 + L2 LINE L2 3060 3156 -157 2223 128 0 3 chr3 65666647 65666953 -161857625 - AluSx SINE Alu -7 305 1 288 287 51 56 chr3 65666953 65667050 -161857528 + L2 LINE L2 3156 3253 -60 1598 177 21 0 chr3 65667218 65667500 -161857078 - AluJb SINE Alu -24 288 1 1434 139 84 26 chr3 65667511 65667784 -161856794 - L1MB3 LINE L1 0 6183 5895 2140 113 160 168 chr3 65667789 65667933 -161856645 + MER50 LTR ERV1 1 145 -589 1799 89 71 60 chr3 65667933 65668259 -161856319 + AluSq SINE Alu 1 329 0 2140 113 160 168 chr3 65668259 65668598 -161855980 + MER50 LTR ERV1 145 481 -253 841 152 0 36 chr3 65668598 65668736 -161855842 + FLAM_C SINE Alu 1 133 0 2140 113 160 168 chr3 65668736 65668863 -161855715 + MER50 LTR ERV1 481 608 -126 349 134 60 15 chr3 65668859 65668926 -161855652 + FLAM SINE Alu 64 133 0 * 1042 133 40 6 chr3 65668926 65669099 -161855479 - L1MB3 LINE L1 -409 5771 5593 22 35 0 0 chr3 65669099 65669128 -161855450 + AT_rich Low_complexity Low_complexity 1 29 0 2173 104 37 0 chr3 65669227 65669525 -161855053 + AluSx SINE Alu 1 309 -3 2143 143 0 0 chr3 65669567 65669874 -161854704 + AluJb SINE Alu 5 311 -1 1954 93 0 55 chr3 65669989 65670279 -161854299 + AluSx SINE Alu 2 275 -37 1986 156 3 3 chr3 65671649 65671950 -161852628 + AluJb SINE Alu 1 301 -11 341 306 136 30 chr3 65672944 65673179 -161851399 + L2 LINE L2 2824 3083 -189 7110 75 19 0 chr3 65673226 65673618 -161850960 - L1PA8 LINE L1 -1 6171 5788 195 42 0 0 chr3 65673618 65673642 -161850936 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 2038 125 0 7 chr3 65673642 65673923 -161850655 - AluSx SINE Alu -30 282 4 7110 75 19 0 chr3 65673923 65674512 -161850066 - L1PA8 LINE L1 -383 5789 5191 11027 111 30 5 chr3 65674514 65676210 -161848368 - L1PA8 LINE L1 -2026 4120 2383 5963 185 184 14 chr3 65676219 65677659 -161846919 + MER52A LTR ERV1 94 1755 0 2119 248 51 9 chr3 65677675 65678243 -161846335 + L2 LINE L2 1705 2296 -1018 4777 172 32 39 chr3 65678252 65680282 -161844296 - L1MB3 LINE L1 -3 6180 4169 2080 126 20 0 chr3 65680282 65680576 -161844002 - AluSx SINE Alu -12 300 1 389 271 26 42 chr3 65680576 65680660 -161843918 - L1MC/D LINE L1 -505 5616 5531 1485 168 81 19 chr3 65680660 65680981 -161843597 - MER2 DNA MER2_type 0 344 4 389 271 26 42 chr3 65680981 65681058 -161843520 - L1MC/D LINE L1 -590 5531 5454 514 186 0 0 chr3 65681408 65681494 -161843084 - AluJ SINE Alu -44 268 183 860 159 8 0 chr3 65681495 65681627 -161842951 - AluJ SINE Alu -179 133 1 2562 245 119 65 chr3 65681798 65682787 -161841791 + MSTD-int LTR MaLR 686 1728 -7 1605 159 102 54 chr3 65682793 65683164 -161841414 + MSTD LTR MaLR 1 389 -7 703 262 72 35 chr3 65684222 65684553 -161840025 - MLT1I LTR MaLR -25 384 66 1240 145 0 0 chr3 65684623 65684802 -161839776 - AluSg/x SINE Alu -8 302 124 2519 53 0 10 chr3 65684802 65685106 -161839472 - AluY SINE Alu -10 301 1 2332 89 3 0 chr3 65685555 65685846 -161838732 - AluSx SINE Alu -20 292 1 250 330 123 54 chr3 65685855 65686459 -161838119 - L2 LINE L2 -20 3293 2650 250 338 108 31 chr3 65686477 65686959 -161837619 - L2 LINE L2 -1011 2303 1785 3098 99 6 28 chr3 65687237 65687733 -161836845 - MER31A LTR ERV1 0 485 1 2359 99 0 6 chr3 65687892 65688206 -161836372 - AluSx SINE Alu 0 312 1 2104 115 14 14 chr3 65689146 65689441 -161835137 + AluSx SINE Alu 5 299 -13 23 0 0 0 chr3 65689790 65689813 -161834765 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 65690755 65690778 -161833800 + AT_rich Low_complexity Low_complexity 1 23 0 430 202 8 118 chr3 65690880 65690924 -161833654 - FLAM_A SINE Alu -202 109 62 1683 160 34 17 chr3 65690924 65691217 -161833361 + AluJb SINE Alu 1 298 -14 430 202 8 118 chr3 65691217 65691291 -161833287 - FLAM_A SINE Alu -249 62 4 218 171 0 0 chr3 65691516 65691551 -161833027 - L2 LINE L2 -90 3223 3189 1448 209 0 36 chr3 65691851 65692152 -161832426 + AluJb SINE Alu 6 295 -17 3395 171 69 61 chr3 65692530 65693326 -161831252 - L1MB7 LINE L1 -53 6131 5343 2261 108 0 3 chr3 65693326 65693633 -161830945 + AluSg SINE Alu 1 306 -4 3395 171 69 61 chr3 65693633 65693730 -161830848 - L1MB7 LINE L1 -841 5343 5248 1785 96 29 4 chr3 65693730 65694002 -161830576 - L1MB4 LINE L1 -6 6174 5896 3395 171 69 61 chr3 65694002 65694171 -161830407 - L1MB7 LINE L1 -936 5248 5060 682 248 182 5 chr3 65694438 65694636 -161829942 + MIR SINE MIR 1 233 -29 286 277 10 30 chr3 65694676 65694777 -161829801 + L1ME LINE L1 5609 5707 -414 1844 141 33 46 chr3 65694966 65695272 -161829306 + AluJo SINE Alu 1 302 -10 2448 77 3 0 chr3 65695272 65695568 -161829010 + AluSp SINE Alu 1 298 -15 342 266 57 40 chr3 65695776 65695900 -161828678 + MIR3 SINE MIR 34 159 -49 804 218 52 39 chr3 65695962 65696191 -161828387 + MIR SINE MIR 31 262 0 21 0 0 0 chr3 65696874 65696895 -161827683 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr3 65697055 65697083 -161827495 + AT_rich Low_complexity Low_complexity 1 28 0 834 165 0 0 chr3 65697993 65698120 -161826458 + FRAM SINE Alu 34 160 -16 2264 113 0 0 chr3 65698227 65698529 -161826049 - AluSx SINE Alu -10 302 1 520 239 88 46 chr3 65699630 65699890 -161824688 - L1ME LINE L1 -302 5819 5549 1543 186 79 70 chr3 65700123 65700351 -161824227 - L1MB8 LINE L1 -6 6172 5948 1915 127 56 14 chr3 65700351 65700635 -161823943 - AluSq SINE Alu -17 296 1 1543 186 79 70 chr3 65700635 65700948 -161823630 - L1MB8 LINE L1 -230 5948 5626 1532 170 40 4 chr3 65701289 65701408 -161823170 + AluJb SINE Alu 1 114 -198 216 0 0 0 chr3 65701408 65701432 -161823146 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1532 170 40 4 chr3 65701432 65701589 -161822989 + AluJb SINE Alu 114 287 -25 1918 178 34 0 chr3 65701616 65701942 -161822636 - MER1B DNA MER1_type 0 337 1 22 35 0 0 chr3 65702161 65702190 -161822388 + AT_rich Low_complexity Low_complexity 1 29 0 749 146 8 16 chr3 65702241 65702364 -161822214 - FLAM_C SINE Alu -16 127 6 686 267 53 24 chr3 65702514 65702720 -161821858 - MIR SINE MIR 0 262 51 2096 134 0 0 chr3 65702725 65703041 -161821537 - AluSx SINE Alu 0 316 1 208 191 0 21 chr3 65703888 65703935 -161820643 + (TTA)n Simple_repeat Simple_repeat 3 48 0 25 0 0 0 chr3 65704074 65704099 -161820479 + AT_rich Low_complexity Low_complexity 1 25 0 273 305 49 0 chr3 65704261 65704343 -161820235 + MIR SINE MIR 156 241 -21 213 356 106 10 chr3 65704474 65704578 -161820000 + MIR SINE MIR 31 144 -64 545 246 46 77 chr3 65704687 65704739 -161819839 + MIR SINE MIR 74 126 -136 2387 69 3 0 chr3 65704739 65705053 -161819525 - AluSp SINE Alu 0 313 1 545 246 46 77 chr3 65705053 65705195 -161819383 + MIR SINE MIR 126 262 0 1900 148 13 0 chr3 65706351 65706649 -161817929 - AluJo SINE Alu -10 302 1 2819 97 18 53 chr3 65707149 65707604 -161816974 + MER52-int LTR ERV1 1765 2203 -4888 22 0 0 0 chr3 65708143 65708165 -161816413 + AT_rich Low_complexity Low_complexity 1 22 0 291 54 0 0 chr3 65708511 65708548 -161816030 + (TCC)n Simple_repeat Simple_repeat 3 39 0 605 271 88 50 chr3 65708998 65709341 -161815237 + L1M4c LINE L1 30 385 -5999 678 239 30 34 chr3 65709432 65709666 -161814912 + L1M4c LINE L1 554 786 -5494 2457 65 0 56 chr3 65709865 65710189 -161814389 - AluY SINE Alu -5 306 1 190 307 80 107 chr3 65710598 65710748 -161813830 + L2 LINE L2 2946 3091 -181 2111 140 0 10 chr3 65710778 65711092 -161813486 - AluSx SINE Alu -1 311 1 654 201 104 0 chr3 65711684 65711828 -161812750 - FRAM SINE Alu -21 155 1 855 229 0 0 chr3 65711842 65712012 -161812566 - FAM SINE Alu -5 170 1 692 248 96 0 chr3 65712273 65712483 -161812095 + MIR SINE MIR 25 257 -5 1104 178 0 5 chr3 65712556 65712770 -161811808 - AluSg/x SINE Alu 0 305 93 1882 120 4 4 chr3 65712870 65713128 -161811450 + AluSx SINE Alu 46 303 -9 467 257 102 35 chr3 65713168 65713483 -161811095 - L1MC4a LINE L1 -1666 6142 5807 862 117 193 14 chr3 65713633 65713778 -161810800 - AluJo SINE Alu -22 290 120 233 152 0 0 chr3 65713818 65713864 -161810714 + L1MC4 LINE L1 6658 6703 -1339 1726 186 3 0 chr3 65713917 65714208 -161810370 + AluJo SINE Alu 3 294 -18 499 225 8 0 chr3 65714208 65714337 -161810241 - L1ME3A LINE L1 -11 6159 6030 1902 157 7 0 chr3 65714413 65714707 -161809871 + AluJo SINE Alu 1 296 -16 231 194 0 32 chr3 65714859 65714921 -161809657 + A-rich Low_complexity Low_complexity 5 64 0 571 247 106 38 chr3 65714987 65715222 -161809356 + MIR SINE MIR 12 262 0 603 128 0 20 chr3 65715317 65715419 -161809159 - AluJb SINE Alu 0 312 213 2286 92 10 7 chr3 65715763 65716066 -161808512 - AluSq SINE Alu -9 304 1 1306 39 0 0 chr3 65716345 65716501 -161808077 + L1PA3 LINE L1 5997 6152 -3 230 208 0 0 chr3 65716532 65716580 -161807998 + L1ME3A LINE L1 5031 5078 -1068 873 167 117 6 chr3 65716680 65716842 -161807736 + FAM SINE Alu 1 44 -5 295 256 145 30 chr3 65716929 65717163 -161807415 + L1ME3A LINE L1 5295 5555 -615 * 1168 230 29 14 chr3 65717146 65717798 -161806780 - L1M4 LINE L1 -2275 3871 3074 1356 169 0 17 chr3 65717801 65718032 -161806546 - AluJo SINE Alu 0 312 86 858 294 65 3 chr3 65718096 65718464 -161806114 + L1ME3A LINE L1 5548 5938 -232 726 143 0 0 chr3 65718467 65718572 -161806006 + FLAM_C SINE Alu 1 105 -38 1250 158 4 71 chr3 65718673 65718927 -161805651 - AluJo SINE Alu -75 237 1 2255 45 45 3 chr3 65718977 65719263 -161805315 + AluY SINE Alu 2 299 -12 2078 117 0 4 chr3 65719494 65719808 -161804770 + AluSg SINE Alu 1 313 0 28 29 0 0 chr3 65720509 65720544 -161804034 + AT_rich Low_complexity Low_complexity 1 35 0 696 134 13 101 chr3 65720813 65721028 -161803550 - MER6 DNA MER2_type 0 865 -64 609 329 34 52 chr3 65721148 65721378 -161803200 + LTR67 LTR ERVL 6 239 -318 2466 75 3 7 chr3 65721378 65721686 -161802892 + AluSp SINE Alu 1 307 -6 609 329 34 52 chr3 65721686 65722015 -161802563 + LTR67 LTR ERVL 239 555 -2 233 227 0 0 chr3 65722627 65722671 -161801907 + AluJ/monomer SINE Alu 1 44 -258 883 159 37 86 chr3 65722839 65723084 -161801494 + MER46A DNA MER2_type 1 233 -3 787 270 72 9 chr3 65723130 65723352 -161801226 - MIR SINE MIR -2 260 25 247 382 55 24 chr3 65723455 65723620 -161800958 + L2 LINE L2 2891 3060 -212 813 133 16 8 chr3 65724306 65724434 -161800144 + AluJo/FLAM SINE Alu 1 129 -173 2495 65 0 3 chr3 65724437 65724745 -161799833 + AluY SINE Alu 1 307 -4 823 143 152 9 chr3 65724747 65724885 -161799693 - L1MB8 LINE L1 -11 6167 6050 1795 177 23 60 chr3 65724885 65725315 -161799263 - MLT2D LTR ERVL 0 414 1 823 143 152 9 chr3 65725315 65725393 -161799185 - L1MB8 LINE L1 -128 6050 5920 668 143 0 0 chr3 65725395 65725493 -161799085 - AluJ/FLAM SINE Alu -214 98 1 383 248 40 0 chr3 65726612 65726713 -161797865 + L1M4 LINE L1 1074 1178 -5364 6767 19 1 1 chr3 65726749 65727536 -161797042 - L1PA4 LINE L1 -3 6152 5366 1148 197 82 0 chr3 65727548 65727903 -161796675 + L1M4 LINE L1 1186 1594 -4948 * 4600 219 34 8 chr3 65727899 65729034 -161795544 - L1M4 LINE L1 -1107 5537 4374 808 254 111 38 chr3 65729160 65729557 -161795021 - L1M4 LINE L1 -6115 427 2 1743 116 0 45 chr3 65731479 65731747 -161792831 - AluSx SINE Alu -17 295 40 261 254 16 0 chr3 65731854 65731917 -161792661 + MER112 DNA MER1_type 191 254 -6 22 0 0 0 chr3 65732009 65732031 -161792547 + AT_rich Low_complexity Low_complexity 1 22 0 225 350 30 10 chr3 65732473 65732573 -161792005 + MIR SINE MIR 53 154 -108 1851 111 96 0 chr3 65732575 65732855 -161791723 - AluSx SINE Alu -5 307 1 2626 162 52 15 chr3 65733200 65733724 -161790854 - L1MB7 LINE L1 -92 6092 5550 798 246 43 158 chr3 65734292 65734736 -161789842 - MLT1L LTR MaLR -5 593 114 286 288 0 12 chr3 65734831 65734911 -161789667 - MLT1L LTR MaLR -536 79 1 216 163 0 0 chr3 65735206 65735249 -161789329 + (ATGGTG)n Simple_repeat Simple_repeat 1 43 0 319 250 11 33 chr3 65735751 65735843 -161788735 + MER103 DNA DNA 65 154 -12 2219 90 10 0 chr3 65735976 65736264 -161788314 - AluSc SINE Alu -18 291 1 802 296 128 46 chr3 65736534 65737382 -161787196 + L1M4 LINE L1 3332 4249 -2395 2152 131 0 0 chr3 65737392 65737697 -161786881 + AluJb SINE Alu 6 310 -2 1148 141 43 112 chr3 65737705 65737981 -161786597 + AluJo SINE Alu 1 257 -55 310 213 83 115 chr3 65737991 65738244 -161786334 + L1M4 LINE L1 4237 4481 -2163 820 125 0 37 chr3 65739045 65739181 -161785397 - FLAM_C SINE Alu -8 135 5 356 332 150 21 chr3 65739595 65739877 -161784701 + L2 LINE L2 2853 3253 -19 2122 105 0 7 chr3 65739908 65740217 -161784361 - AluY SINE Alu 0 307 1 200 330 76 30 chr3 65741239 65741436 -161783142 - L2 LINE L2 -254 3018 2813 1480 163 87 3 chr3 65741500 65741788 -161782790 - AluJo SINE Alu 0 312 1 2203 95 13 13 chr3 65741984 65742156 -161782422 - AluSx SINE Alu -6 306 132 1430 109 198 12 chr3 65742156 65742404 -161782174 - AluSg1 SINE Alu -15 294 1 2203 95 13 13 chr3 65742404 65742537 -161782041 - AluSx SINE Alu -179 133 1 346 107 54 0 chr3 65742537 65742593 -161781985 - AluSg/x SINE Alu -166 134 76 1353 124 19 9 chr3 65742593 65742803 -161781775 - AluSx SINE Alu -100 212 1 469 228 67 22 chr3 65742816 65742954 -161781624 - L1MB7 LINE L1 0 6184 6034 241 299 46 11 chr3 65743303 65743390 -161781188 + MIR SINE MIR 63 152 -56 23 0 0 0 chr3 65744972 65744995 -161779583 + AT_rich Low_complexity Low_complexity 1 23 0 540 305 138 9 chr3 65745424 65745634 -161778944 + MIR SINE MIR 23 259 -3 1803 147 37 3 chr3 65745814 65746155 -161778423 - AluSx SINE Alu 0 351 1 185 91 0 30 chr3 65746240 65746273 -161778305 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 1755 118 4 0 chr3 65746681 65746927 -161777651 - AluSx SINE Alu -9 303 57 241 260 221 0 chr3 65746957 65747084 -161777494 + L1ME4a LINE L1 5946 6100 -21 208 302 70 12 chr3 65747153 65747239 -161777339 - L2 LINE L2 -9 3263 3173 417 278 57 98 chr3 65747718 65747817 -161776761 - MIR SINE MIR -29 233 144 2139 127 0 0 chr3 65747817 65748109 -161776469 - AluSg SINE Alu -18 292 1 417 278 57 98 chr3 65748109 65748203 -161776375 - MIR SINE MIR -118 144 48 2268 112 0 7 chr3 65748524 65748828 -161775750 - AluSx SINE Alu -10 302 1 693 183 0 32 chr3 65750120 65750306 -161774272 + CT-rich Low_complexity Low_complexity 1 180 0 252 110 7 90 chr3 65750323 65750478 -161774100 + (TTC)n Simple_repeat Simple_repeat 3 144 0 584 186 11 33 chr3 65750478 65750661 -161773917 + CT-rich Low_complexity Low_complexity 2 180 0 2135 117 10 0 chr3 65750679 65750978 -161773600 - AluSp SINE Alu -11 302 1 413 117 0 0 chr3 65750979 65751039 -161773539 - Alu SINE Alu -14 297 238 888 68 0 17 chr3 65751040 65751158 -161773420 - AluSq/x SINE Alu -197 116 1 1645 194 0 7 chr3 65751861 65752155 -161772423 + AluJo SINE Alu 1 292 -20 941 182 0 0 chr3 65752398 65752552 -161772026 - FRAM SINE Alu -22 154 1 1878 141 3 7 chr3 65752581 65752904 -161771674 - AluSx SINE Alu 0 322 1 770 281 40 16 chr3 65752961 65753214 -161771364 - MIR SINE MIR -2 260 2 318 333 38 19 chr3 65753409 65753434 -161771144 + MIR3 SINE MIR 15 38 -170 2089 122 0 38 chr3 65753434 65753753 -161770825 - AluSx SINE Alu -4 308 2 318 333 38 19 chr3 65753753 65753886 -161770692 + MIR3 SINE MIR 38 176 -32 2177 100 0 3 chr3 65753889 65754178 -161770400 - AluY SINE Alu -21 290 3 846 261 73 8 chr3 65754341 65754575 -161770003 + MIR SINE MIR 7 255 -7 342 265 20 10 chr3 65754618 65754716 -161769862 - MIR3 SINE MIR -19 189 91 2216 92 7 3 chr3 65755629 65755924 -161768654 + AluSp SINE Alu 1 296 -17 730 104 49 0 chr3 65755925 65756088 -161768490 + (TA)n Simple_repeat Simple_repeat 1 171 0 1973 147 0 3 chr3 65756284 65756583 -161767995 + AluSx SINE Alu 1 298 -14 280 250 0 14 chr3 65756733 65756805 -161767773 + (TA)n Simple_repeat Simple_repeat 2 72 0 2667 113 40 55 chr3 65756808 65757088 -161767490 - Tigger3b DNA MER2_type -1800 1229 957 2026 133 0 0 chr3 65757088 65757374 -161767204 + AluSx SINE Alu 24 309 -3 2667 113 40 55 chr3 65757374 65757563 -161767015 - Tigger3b DNA MER2_type -2072 957 767 734 183 8 0 chr3 65757564 65757695 -161766883 + AluJo SINE Alu 1 132 -170 22 35 0 0 chr3 65757696 65757725 -161766853 + AT_rich Low_complexity Low_complexity 1 29 0 2192 113 3 0 chr3 65757731 65758033 -161766545 + AluSx SINE Alu 1 303 -9 779 176 17 80 chr3 65758033 65758209 -161766369 + AluJo SINE Alu 134 298 -14 4357 129 34 21 chr3 65758210 65758970 -161765608 - Tigger3b DNA MER2_type -461 770 1 274 269 15 0 chr3 65758970 65759037 -161765541 + (TATG)n Simple_repeat Simple_repeat 3 70 0 1600 118 127 51 chr3 65759235 65759549 -161765029 - MER44D DNA MER2_type -1 608 1 826 190 92 97 chr3 65760319 65760630 -161763948 - L1MC5 LINE L1 -472 7489 7179 2049 126 3 0 chr3 65760630 65760936 -161763642 + AluSp SINE Alu 1 313 0 826 190 92 97 chr3 65760936 65761014 -161763564 - L1MC5 LINE L1 -782 7179 7102 2003 116 17 10 chr3 65761018 65761310 -161763268 + AluSx SINE Alu 8 301 -11 1219 200 4 4 chr3 65761318 65761548 -161763030 + AluJo SINE Alu 76 305 -7 1886 124 0 0 chr3 65761566 65761840 -161762738 + L1PB3 LINE L1 5881 6154 0 490 220 52 40 chr3 65761848 65762021 -161762557 - L1MC5 LINE L1 -875 7086 6912 715 93 0 0 chr3 65762022 65762119 -161762459 - FLAM_C SINE Alu -13 130 34 512 222 161 6 chr3 65762135 65762297 -161762281 - L1MC5 LINE L1 -1048 6913 6727 1158 91 0 13 chr3 65764137 65764291 -161760287 + AluSg/x SINE Alu 132 283 -27 212 0 36 0 chr3 65764295 65764323 -161760255 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2453 82 0 0 chr3 65764328 65764631 -161759947 + AluSc SINE Alu 1 303 -6 1981 127 165 3 chr3 65765414 65765784 -161758794 - MSTB1 LTR MaLR 0 432 3 1791 77 5 0 chr3 65766096 65766318 -161758260 + AluSp SINE Alu 1 223 -90 279 106 0 0 chr3 65766318 65766365 -161758213 + AluSp SINE Alu 256 302 -1 334 232 14 0 chr3 65767919 65767988 -161756590 - L2 LINE L2 -16 3297 3228 914 163 7 0 chr3 65768093 65768240 -161756338 + AluJb SINE Alu 134 281 -31 234 0 0 0 chr3 65768244 65768270 -161756308 + (GAAAA)n Simple_repeat Simple_repeat 2 27 0 1505 131 44 9 chr3 65768629 65768858 -161755720 + AluJb SINE Alu 59 295 -17 1965 108 3 24 chr3 65768864 65769173 -161755405 + AluSx SINE Alu 3 305 0 22 56 0 0 chr3 65769690 65769726 -161754852 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 65769813 65769834 -161754744 + AT_rich Low_complexity Low_complexity 1 21 0 274 115 0 98 chr3 65769925 65769949 -161754629 - MER33 DNA MER1_type -2261 324 299 1895 164 7 0 chr3 65769949 65770247 -161754331 + AluJo SINE Alu 1 300 -12 274 115 0 98 chr3 65770247 65770283 -161754295 - MER33 DNA MER1_type -2286 299 270 670 147 138 0 chr3 65770283 65770399 -161754179 + FLAM_C SINE Alu 2 133 0 1691 187 0 4 chr3 65770419 65770697 -161753881 + AluJo SINE Alu 6 282 -30 454 18 0 0 chr3 65770726 65770781 -161753797 - MLT2A1 LTR ERVL 0 444 390 533 90 87 0 chr3 65770781 65771024 -161753554 + (TA)n Simple_repeat Simple_repeat 1 264 0 3310 55 2 0 chr3 65771024 65771422 -161753156 - MLT2A1 LTR ERVL -45 399 1 560 211 80 57 chr3 65771422 65771441 -161753137 - MER33 DNA MER1_type -2322 263 246 983 196 0 0 chr3 65771441 65771599 -161752979 + FAM SINE Alu 1 158 -17 311 0 26 0 chr3 65771601 65771640 -161752938 + (TA)n Simple_repeat Simple_repeat 1 40 0 560 211 80 57 chr3 65771640 65771882 -161752696 - MER33 DNA MER1_type -2339 246 1 22 0 0 0 chr3 65773258 65773280 -161751298 + AT_rich Low_complexity Low_complexity 1 22 0 1112 118 0 0 chr3 65774126 65774278 -161750300 + AluSg/x SINE Alu 137 288 -24 2182 124 0 3 chr3 65774306 65774613 -161749965 + AluSq SINE Alu 1 306 -7 2376 97 0 6 chr3 65775191 65775502 -161749076 + AluSx SINE Alu 1 309 -3 1469 192 6 48 chr3 65775664 65775809 -161748769 + AluJo SINE Alu 1 128 -184 2070 125 7 7 chr3 65775809 65776113 -161748465 + AluSx SINE Alu 1 304 -8 1469 192 6 48 chr3 65776113 65776279 -161748299 + AluJo SINE Alu 128 299 -13 478 126 175 58 chr3 65776447 65776550 -161748028 + FLAM_A SINE Alu 20 134 -8 2333 87 3 0 chr3 65776558 65776845 -161747733 + AluSq SINE Alu 11 298 -15 1716 168 37 3 chr3 65777214 65777512 -161747066 + AluJo SINE Alu 3 310 -2 2361 103 0 25 chr3 65779793 65780113 -161744465 - AluSx SINE Alu 0 312 1 411 344 50 33 chr3 65780473 65780653 -161743925 + MIR SINE MIR 48 230 -32 511 224 0 0 chr3 65781043 65781128 -161743450 - AluJ/FLAM SINE Alu -227 85 1 462 227 89 19 chr3 65781332 65781542 -161743036 + L1ME3A LINE L1 5627 5937 -233 1987 119 0 31 chr3 65781631 65781924 -161742654 + AluSg SINE Alu 1 284 -26 494 112 22 11 chr3 65781944 65782033 -161742545 + AluSg SINE Alu 1 90 -220 2395 77 10 0 chr3 65782165 65782463 -161742115 - AluSp SINE Alu -12 301 1 190 0 0 62 chr3 65782469 65782501 -161742077 + (TTTTG)n Simple_repeat Simple_repeat 5 34 0 2158 109 3 3 chr3 65782509 65782813 -161741765 - AluSx SINE Alu -8 304 1 207 69 0 0 chr3 65782816 65782845 -161741733 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2478 88 0 0 chr3 65782866 65783172 -161741406 - AluSg SINE Alu 0 310 5 2235 96 17 0 chr3 65783201 65783493 -161741085 - AluSx SINE Alu -15 297 1 506 240 55 82 chr3 65783521 65783888 -161740690 + HAL1 LINE L1 1009 1365 -1142 1126 176 106 4 chr3 65783910 65784166 -161740412 + L1MB5 LINE L1 5883 6164 -10 299 198 70 12 chr3 65784184 65784270 -161740308 + HAL1 LINE L1 1372 1462 -1045 390 244 33 82 chr3 65784282 65784330 -161740248 - MLT1I LTR MaLR -6 403 354 2002 98 87 0 chr3 65784330 65784606 -161739972 - AluSp SINE Alu -13 300 1 390 244 33 82 chr3 65784606 65784739 -161739839 - MLT1I LTR MaLR -55 354 244 797 233 76 0 chr3 65784997 65785207 -161739371 + HAL1 LINE L1 1521 1746 -761 319 284 80 11 chr3 65785223 65785399 -161739179 + HAL1 LINE L1 1924 2111 -396 22 35 0 0 chr3 65785399 65785428 -161739150 + AT_rich Low_complexity Low_complexity 1 29 0 2239 92 28 0 chr3 65785437 65785721 -161738857 + AluSc SINE Alu 1 292 -17 304 197 124 15 chr3 65785807 65785944 -161738634 + HAL1 LINE L1 2285 2436 -71 2251 87 40 0 chr3 65785980 65786278 -161738300 - AluY SINE Alu -1 310 1 222 287 51 64 chr3 65786310 65786467 -161738111 - L2 LINE L2 -1339 1975 1821 446 178 76 0 chr3 65788454 65788572 -161736006 - L1MA4 LINE L1 -1 6299 6173 277 300 46 42 chr3 65788608 65788672 -161735906 + L1ME LINE L1 5586 5648 -473 2230 100 3 10 chr3 65788672 65788973 -161735605 - AluSq SINE Alu -14 299 1 277 300 46 42 chr3 65788973 65789145 -161735433 + L1ME LINE L1 5648 5823 -298 360 269 51 0 chr3 65789547 65789625 -161734953 + MIR SINE MIR 64 145 -63 781 174 0 0 chr3 65789759 65789880 -161734698 + FLAM_C SINE Alu 1 121 -12 312 27 0 0 chr3 65789880 65789917 -161734661 + (CA)n Simple_repeat Simple_repeat 2 38 0 2171 92 0 0 chr3 65789924 65790205 -161734373 - AluY SINE Alu -6 305 25 366 234 0 0 chr3 65790261 65790325 -161734253 - L2 LINE L2 -27 3286 3223 1213 153 49 27 chr3 65790327 65790550 -161734028 + AluJo SINE Alu 85 312 0 899 123 23 0 chr3 65792106 65792236 -161732342 + FLAM_C SINE Alu 1 133 0 189 74 0 0 chr3 65792422 65792449 -161732129 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1651 158 4 8 chr3 65792573 65792839 -161731739 + AluJo SINE Alu 33 297 -15 2319 108 13 0 chr3 65794295 65794602 -161729976 + AluSp SINE Alu 1 311 -2 486 84 0 0 chr3 65795334 65795405 -161729173 - L1MA1 LINE L1 -6 6296 6226 473 314 52 21 chr3 65795659 65795850 -161728728 + MIR SINE MIR 36 232 -30 721 145 0 97 chr3 65796447 65796592 -161727986 - FLAM_A SINE Alu -2 131 1 195 167 0 0 chr3 65796599 65796641 -161727937 + CT-rich Low_complexity Low_complexity 2 43 0 1793 166 31 0 chr3 65797414 65797704 -161726874 + AluJb SINE Alu 1 299 -13 2375 162 43 9 chr3 65797753 65798191 -161726387 - MER88 LTR ERVL -11 453 1 183 42 0 0 chr3 65798263 65798287 -161726291 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 829 183 21 62 chr3 65798390 65798630 -161725948 + L1MC5 LINE L1 7300 7529 -432 2208 111 0 3 chr3 65798630 65798918 -161725660 + AluSx SINE Alu 1 287 -25 2025 91 28 63 chr3 65798941 65799159 -161725419 - Tigger3(Golem) DNA MER2_type -275 2754 2555 2445 91 0 0 chr3 65799159 65799467 -161725111 + AluSc SINE Alu 1 308 -1 2025 91 28 63 chr3 65799467 65799646 -161724932 - Tigger3(Golem) DNA MER2_type -474 2555 2371 2131 114 3 10 chr3 65799649 65799948 -161724630 + AluSx SINE Alu 1 297 -15 255 170 0 0 chr3 65799949 65799996 -161724582 + (CATA)n Simple_repeat Simple_repeat 2 48 0 233 109 109 0 chr3 65799996 65800051 -161724527 + Tigger3(Golem) DNA MER2_type 203 263 -2766 933 121 0 0 chr3 65800051 65800175 -161724403 + AluSq/x SINE Alu 1 124 -188 466 142 13 134 chr3 65800361 65800593 -161723985 + AluSg/x SINE Alu 92 295 -15 276 289 40 0 chr3 65800614 65800763 -161723815 + L1MC5 LINE L1 7537 7691 -270 304 322 196 30 chr3 65801005 65801275 -161723303 - L2 LINE L2 -572 2742 2428 368 195 204 26 chr3 65801356 65801469 -161723109 - MER94 DNA DNA -1 133 1 1174 200 4 8 chr3 65802759 65802994 -161721584 + AluJb SINE Alu 75 308 -4 596 224 81 0 chr3 65802996 65803170 -161721408 - L1MC4 LINE L1 -167 7875 7688 512 105 92 0 chr3 65803171 65803247 -161721331 + AluJo SINE Alu 1 83 -229 646 166 24 83 chr3 65803247 65803416 -161721162 + MER20 DNA MER1_type 25 183 -36 1349 127 0 24 chr3 65803416 65803628 -161720950 + AluJo SINE Alu 89 295 -17 871 253 114 19 chr3 65803628 65803823 -161720755 - L1MC4 LINE L1 -1259 6783 6608 2125 139 3 0 chr3 65803823 65804125 -161720453 - AluSx SINE Alu -9 303 1 871 253 114 19 chr3 65804125 65804289 -161720289 - L1MC4 LINE L1 -1434 6608 6390 531 175 19 11 chr3 65804331 65804485 -161720093 + MER20 DNA MER1_type 1 217 -2 189 0 0 0 chr3 65804594 65804615 -161719963 + (A)n Simple_repeat Simple_repeat 1 21 0 2244 97 0 25 chr3 65804840 65805160 -161719418 - AluSx SINE Alu 0 312 1 243 0 0 0 chr3 65805217 65805244 -161719334 + (TA)n Simple_repeat Simple_repeat 1 27 0 2323 91 0 0 chr3 65805571 65805869 -161718709 - AluY SINE Alu -13 298 1 232 163 41 0 chr3 65806133 65806182 -161718396 - L1MC4 LINE L1 -1007 7035 6985 26 30 0 0 chr3 65806183 65806216 -161718362 + AT_rich Low_complexity Low_complexity 1 33 0 336 315 28 56 chr3 65806609 65806822 -161717756 + MIR SINE MIR 34 240 -22 2202 114 3 0 chr3 65807763 65808061 -161716517 + AluSx SINE Alu 1 299 -13 2361 99 3 0 chr3 65808151 65808454 -161716124 - AluSp SINE Alu -9 304 1 21 0 0 0 chr3 65808454 65808475 -161716103 + AT_rich Low_complexity Low_complexity 1 21 0 2083 124 28 0 chr3 65808733 65809024 -161715554 - AluSg SINE Alu -11 299 1 676 319 82 7 chr3 65810107 65810386 -161714192 - L2 LINE L2 0 3313 3014 234 0 0 0 chr3 65810466 65810492 -161714086 + (A)n Simple_repeat Simple_repeat 1 26 0 28 19 0 56 chr3 65811413 65811467 -161713111 + AT_rich Low_complexity Low_complexity 1 51 0 33 73 0 0 chr3 65811845 65811913 -161712665 + AT_rich Low_complexity Low_complexity 1 68 0 1915 181 0 3 chr3 65812218 65812521 -161712057 + AluJb SINE Alu 1 302 -10 1052 168 69 10 chr3 65812764 65812967 -161711611 + AluJb SINE Alu 97 311 -1 270 136 0 62 chr3 65813048 65813129 -161711449 + (TA)n Simple_repeat Simple_repeat 1 76 0 2123 129 3 0 chr3 65813131 65813425 -161711153 - AluSp SINE Alu -18 295 1 2024 110 57 0 chr3 65813430 65813711 -161710867 - AluSg SINE Alu -13 297 1 2254 97 3 0 chr3 65814427 65814715 -161709863 + AluSp SINE Alu 9 297 -16 202 388 0 24 chr3 65814718 65814803 -161709775 - MIR3 SINE MIR -10 198 116 354 240 31 31 chr3 65814891 65814987 -161709591 - MIR3 SINE MIR -99 109 14 2333 94 0 0 chr3 65817646 65817943 -161706635 + AluSp SINE Alu 1 297 -16 2371 87 3 3 chr3 65818060 65818359 -161706219 + AluSp SINE Alu 1 299 -14 2144 115 0 7 chr3 65819280 65819575 -161705003 + AluSx SINE Alu 1 293 -19 2053 145 3 0 chr3 65819892 65820203 -161704375 + AluSx SINE Alu 1 312 0 1120 85 0 57 chr3 65820388 65820634 -161703944 + SVA Other Other 635 866 -520 6170 68 7 58 chr3 65820659 65821648 -161702930 + SVA Other Other 439 1377 -9 273 39 39 19 chr3 65821651 65821703 -161702875 + (CAAAA)n Simple_repeat Simple_repeat 3 55 0 1971 112 10 41 chr3 65821716 65822010 -161702568 + AluJb SINE Alu 5 289 -23 250 231 224 7 chr3 65822077 65822224 -161702354 + L1MC4 LINE L1 7864 8042 0 303 176 44 0 chr3 65822592 65822660 -161701918 - AluSp/q SINE Alu -7 296 226 1160 176 5 0 chr3 65822660 65822848 -161701730 - AluSx SINE Alu -122 190 2 540 233 147 0 chr3 65822850 65823000 -161701578 - MER45A DNA AcHobo -6 172 1 1850 144 3 38 chr3 65823032 65823345 -161701233 + AluSx SINE Alu 1 302 -10 2155 140 0 6 chr3 65823667 65823981 -161700597 - AluSx SINE Alu 0 312 1 1326 183 16 65 chr3 65824641 65824963 -161699615 + AluJb SINE Alu 1 306 -6 216 211 111 67 chr3 65825077 65825167 -161699411 + MIR SINE MIR 113 206 -56 310 258 56 22 chr3 65825186 65825275 -161699303 + MIR3 SINE MIR 109 200 -8 22 0 0 0 chr3 65825968 65825990 -161698588 + AT_rich Low_complexity Low_complexity 1 22 0 234 321 9 38 chr3 65826380 65826486 -161698092 - MIR SINE MIR 0 262 160 21 0 0 0 chr3 65826520 65826541 -161698037 + AT_rich Low_complexity Low_complexity 1 21 0 190 340 0 0 chr3 65826575 65826622 -161697956 - MIR SINE MIR -67 141 95 214 337 46 71 chr3 65826758 65826954 -161697624 + L2 LINE L2 2835 3025 -288 239 298 64 11 chr3 65827038 65827132 -161697446 + L2 LINE L2 3215 3313 0 225 265 44 29 chr3 65827277 65827345 -161697233 + L2 LINE L2 3244 3312 -1 223 167 21 0 chr3 65827454 65827502 -161697076 - L2 LINE L2 -1 3312 3264 313 343 110 24 chr3 65827601 65827855 -161696723 + L2 LINE L2 2995 3270 -2 2478 51 3 3 chr3 65827876 65828188 -161696390 - AluSp SINE Alu -1 312 1 336 278 119 0 chr3 65828211 65828337 -161696241 - MIR SINE MIR -59 203 63 2148 98 7 0 chr3 65832179 65832475 -161692103 - AluSq SINE Alu -15 298 1 261 325 5 106 chr3 65832719 65832862 -161691716 + L2 LINE L2 3099 3255 -17 357 24 0 0 chr3 65832862 65832904 -161691674 + (TTTA)n Simple_repeat Simple_repeat 4 45 0 1870 127 3 3 chr3 65832907 65833191 -161691387 - AluSq SINE Alu -29 284 1 261 325 5 106 chr3 65833191 65833231 -161691347 + L2 LINE L2 3257 3267 -5 1579 149 18 4 chr3 65833567 65833842 -161690736 + AluJo SINE Alu 1 279 -33 230 204 19 0 chr3 65833890 65833944 -161690634 + A-rich Low_complexity Low_complexity 2 56 0 24 32 0 0 chr3 65834048 65834079 -161690499 + AT_rich Low_complexity Low_complexity 1 31 0 1541 163 31 24 chr3 65834106 65834394 -161690184 - AluJo SINE Alu -12 290 1 1277 183 8 23 chr3 65834563 65834826 -161689752 + AluJo SINE Alu 43 301 -11 248 208 28 28 chr3 65834867 65834939 -161689639 + L1MC5 LINE L1 7839 7910 -51 229 348 18 18 chr3 65834964 65835076 -161689502 + L1M4 LINE L1 4015 4126 -2020 1494 149 0 81 chr3 65835082 65835378 -161689200 - AluJb SINE Alu -40 272 1 502 167 0 12 chr3 65835423 65835507 -161689071 - AluJ/FLAM SINE Alu -228 84 2 463 257 142 60 chr3 65835816 65835910 -161688668 - Charlie8 DNA MER1_type -105 236 151 1894 123 0 43 chr3 65835910 65836238 -161688340 + AluSx SINE Alu 1 312 0 463 257 142 60 chr3 65836238 65836361 -161688217 - Charlie8 DNA MER1_type -190 151 1 2462 141 37 48 chr3 65836490 65836558 -161688020 - MSTB2 LTR MaLR 0 457 390 2332 74 0 10 chr3 65836558 65836869 -161687709 + AluY SINE Alu 2 309 -2 2462 141 37 48 chr3 65836869 65837262 -161687316 - MSTB2 LTR MaLR -67 390 1 591 193 48 57 chr3 65838125 65838391 -161686187 - MER46C DNA MER2_type -4 334 33 1876 136 14 0 chr3 65838845 65839132 -161685446 + AluJb SINE Alu 1 291 -21 960 211 43 9 chr3 65840180 65840321 -161684257 - L1MD2 LINE L1 0 8042 7907 243 0 0 0 chr3 65840321 65840348 -161684230 + (CA)n Simple_repeat Simple_repeat 2 28 0 960 211 43 9 chr3 65840348 65840450 -161684128 - L1MD2 LINE L1 -135 7907 6258 307 253 91 40 chr3 65841065 65841164 -161683414 - L1ME4a LINE L1 0 6121 6018 426 278 83 75 chr3 65841203 65841336 -161683242 + MIR SINE MIR 3 133 -129 1967 122 0 30 chr3 65841336 65841480 -161683098 + AluSx SINE Alu 1 148 -164 2201 103 10 10 chr3 65841480 65841791 -161682787 + AluSx SINE Alu 1 311 -1 1967 122 0 30 chr3 65841791 65841950 -161682628 + AluSx SINE Alu 148 295 -17 1966 118 0 0 chr3 65841952 65842261 -161682317 + AluSg SINE Alu 1 309 0 426 278 83 75 chr3 65842261 65842281 -161682297 + MIR SINE MIR 133 151 -111 1941 124 3 0 chr3 65842281 65842564 -161682014 + AluSg SINE Alu 1 284 -26 426 278 83 75 chr3 65842564 65842656 -161681922 + MIR SINE MIR 151 256 -6 1468 256 45 53 chr3 65842722 65842884 -161681694 - L2 LINE L2 0 3313 3151 2011 118 11 0 chr3 65842884 65843171 -161681407 + AluSx SINE Alu 1 290 -22 1468 256 45 53 chr3 65843171 65843617 -161680961 - L2 LINE L2 -162 3151 2711 362 309 144 0 chr3 65843891 65844092 -161680486 - MIR SINE MIR -2 260 31 232 274 0 0 chr3 65844873 65844935 -161679643 - MER117 DNA MER1_type -108 89 28 21 0 0 0 chr3 65845051 65845072 -161679506 + AT_rich Low_complexity Low_complexity 1 21 0 1608 138 64 7 chr3 65845082 65845365 -161679213 + AluJb SINE Alu 1 299 -13 1466 160 31 35 chr3 65845874 65846161 -161678417 + AluJb SINE Alu 2 287 -25 518 211 135 6 chr3 65846218 65846374 -161678204 - MER104 DNA MER2_type 0 180 5 1719 93 4 0 chr3 65846405 65846631 -161677947 + AluSq SINE Alu 1 227 -86 219 316 154 8 chr3 65846900 65847017 -161677561 - MIR3 SINE MIR -66 142 9 521 192 96 8 chr3 65847610 65847735 -161676843 - LTR37B LTR ERV1 -3 465 330 2141 173 40 24 chr3 65847744 65848200 -161676378 - MLT1C LTR MaLR -4 463 1 530 273 53 7 chr3 65848391 65848541 -161676037 + MIR SINE MIR 2 158 -104 183 42 0 0 chr3 65849219 65849243 -161675335 + (CAGGC)n Simple_repeat Simple_repeat 3 26 0 225 0 0 0 chr3 65849491 65849516 -161675062 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 893 71 0 0 chr3 65849527 65849640 -161674938 - AluSq/x SINE Alu -200 113 1 1904 146 10 0 chr3 65849678 65849987 -161674591 - AluSx SINE Alu 0 312 1 595 262 124 13 chr3 65850038 65850263 -161674315 + L1MB8 LINE L1 5927 6176 -2 1343 160 0 21 chr3 65850275 65850512 -161674066 + AluJo SINE Alu 5 236 -76 1842 146 10 3 chr3 65850513 65850808 -161673770 + AluSx SINE Alu 7 303 -9 1923 130 7 0 chr3 65850851 65851144 -161673434 + AluSx SINE Alu 7 301 -11 2213 105 3 0 chr3 65851161 65851466 -161673112 + AluSq SINE Alu 1 306 -7 850 115 0 15 chr3 65851474 65851591 -161672987 + AluSq/x SINE Alu 7 123 -189 198 0 0 0 chr3 65851591 65851613 -161672965 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 850 115 0 15 chr3 65851613 65851625 -161672953 + AluSq/x SINE Alu 123 134 -178 2131 151 6 0 chr3 65851625 65851949 -161672629 + MER7A DNA MER2_type 23 346 0 249 232 18 0 chr3 65852084 65852140 -161672438 + MIR SINE MIR 82 138 -124 298 170 75 74 chr3 65852531 65852612 -161671966 - MIR SINE MIR -63 145 64 768 167 8 8 chr3 65852941 65853067 -161671511 + AluJ SINE Alu 1 126 -176 1357 134 0 19 chr3 65853081 65853290 -161671288 + AluSx SINE Alu 31 235 -77 28 0 0 0 chr3 65853290 65853318 -161671260 + AT_rich Low_complexity Low_complexity 1 28 0 628 168 0 0 chr3 65853320 65853421 -161671157 + AluJ SINE Alu 133 233 -79 1386 134 69 79 chr3 65855171 65855296 -161669282 + AluSx SINE Alu 1 126 -186 2176 92 23 7 chr3 65855296 65855602 -161668976 + AluSq SINE Alu 1 311 -2 1386 134 69 79 chr3 65855602 65855766 -161668812 + AluSx SINE Alu 126 287 -25 430 261 35 9 chr3 65857294 65857409 -161667169 - MIR SINE MIR -51 211 94 1439 110 41 23 chr3 65857804 65858022 -161666556 - MER30 DNA MER1_type -8 222 1 279 185 99 25 chr3 65858525 65858606 -161665972 + L1MD3 LINE L1 7673 7759 -236 1033 182 0 0 chr3 65858607 65858777 -161665801 - FAM SINE Alu -5 170 1 503 281 27 0 chr3 65858778 65858924 -161665654 - L1MD3 LINE L1 -435 7560 7411 462 156 21 62 chr3 65858924 65859020 -161665558 - MLT1F1 LTR MaLR -433 134 43 2207 86 0 7 chr3 65859064 65859365 -161665213 + AluSc SINE Alu 1 299 -10 546 232 65 26 chr3 65859715 65859870 -161664708 - MIR SINE MIR -24 238 78 2097 100 13 3 chr3 65859870 65860170 -161664408 + AluSq SINE Alu 1 303 -10 925 182 0 0 chr3 65860170 65860340 -161664238 + AluSg/x SINE Alu 132 301 -9 197 0 71 0 chr3 65860976 65861004 -161663574 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 2172 75 3 27 chr3 65861008 65861302 -161663276 - AluY SINE Alu -24 287 1 998 71 0 0 chr3 65861309 65861435 -161663143 - AluSc SINE Alu -178 131 6 319 263 127 24 chr3 65861443 65861656 -161662922 - HAL1 LINE L1 -349 2158 1924 861 233 76 0 chr3 65861672 65861882 -161662696 - HAL1 LINE L1 -761 1746 1521 422 265 33 83 chr3 65862141 65862273 -161662305 + MLT1I LTR MaLR 232 354 -55 1896 98 87 0 chr3 65862273 65862549 -161662029 + AluSp SINE Alu 1 300 -13 422 265 33 83 chr3 65862549 65862597 -161661981 + MLT1I LTR MaLR 354 403 -6 327 198 70 12 chr3 65862609 65862695 -161661883 - HAL1 LINE L1 -1045 1462 1372 1217 181 106 4 chr3 65862704 65862969 -161661609 - L1MB5 LINE L1 0 6174 5883 565 237 58 83 chr3 65862963 65863360 -161661218 - HAL1 LINE L1 -1112 1395 1009 * 2126 96 17 0 chr3 65863388 65863680 -161660898 + AluSx SINE Alu 1 297 -15 2274 87 7 0 chr3 65863709 65864008 -161660570 + AluSp SINE Alu 5 305 -8 778 269 124 106 chr3 65864523 65864704 -161659874 - HAL1 LINE L1 -1594 913 737 1755 140 0 4 chr3 65864704 65864982 -161659596 - AluJb SINE Alu -3 309 33 778 269 124 106 chr3 65864982 65865311 -161659267 - HAL1 LINE L1 -1770 737 415 1740 171 23 0 chr3 65865311 65865616 -161658962 + AluJb SINE Alu 1 312 0 778 269 124 106 chr3 65865616 65865932 -161658646 - HAL1 LINE L1 -2092 415 71 214 316 133 76 chr3 65865935 65866371 -161658207 + L2 LINE L2 1953 2413 -901 23 0 0 0 chr3 65866538 65866561 -161658017 + AT_rich Low_complexity Low_complexity 1 23 0 222 300 140 10 chr3 65866716 65866816 -161657762 + L2 LINE L2 2703 2815 -499 1080 185 15 10 chr3 65866820 65867020 -161657558 + MER58A DNA MER1_type 1 201 -23 610 260 57 5 chr3 65867182 65867374 -161657204 + L2 LINE L2 3112 3313 0 21 0 0 0 chr3 65867441 65867462 -161657116 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr3 65867507 65867532 -161657046 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 729 242 6 0 chr3 65867532 65867689 -161656889 - FAM SINE Alu -17 158 1 2262 76 7 3 chr3 65867786 65868087 -161656491 + AluSc SINE Alu 1 302 -7 575 113 0 52 chr3 65868313 65868410 -161656168 - AluSg/x SINE Alu -2 310 219 1001 167 9 59 chr3 65868525 65868569 -161656009 + AluJo SINE Alu 83 128 -184 1966 141 3 10 chr3 65868569 65868881 -161655697 - AluSq SINE Alu -3 310 1 1001 167 9 59 chr3 65868881 65869057 -161655521 + AluJo SINE Alu 128 292 -20 1628 131 23 36 chr3 65869468 65869774 -161654804 - AluSg SINE Alu -7 303 2 1304 125 10 2 chr3 65869892 65871617 -161652961 + ALR/Alpha Satellite centromeric 1 1738 -54 1189 141 11 5 chr3 65871741 65873018 -161651560 + ALR/Alpha Satellite centromeric 1 1284 -76 22 0 0 0 chr3 65873382 65873404 -161651174 + AT_rich Low_complexity Low_complexity 1 22 0 185 388 37 8 chr3 65873857 65873991 -161650587 - L2 LINE L2 -791 2523 2386 991 212 38 0 chr3 65874023 65874207 -161650371 + Tigger3(Golem) DNA MER2_type 1 191 -2838 1155 159 8 1 chr3 65874311 65875570 -161649008 + ALR/Alpha Satellite centromeric 1 1267 -42 1289 158 4 2 chr3 65875674 65878156 -161646422 + ALR/Alpha Satellite centromeric 1 2487 -18 1162 143 3 1 chr3 65879560 65880571 -161644007 + ALR/Alpha Satellite centromeric 1 1013 0 311 254 15 8 chr3 65880685 65880815 -161643763 + ALR/Alpha Satellite centromeric 42 172 0 * 1215 137 9 3 chr3 65880702 65881873 -161642705 + ALR/Alpha Satellite centromeric 1 1179 -30 1157 145 3 2 chr3 65881982 65882995 -161641583 + ALR/Alpha Satellite centromeric 1 1014 -1 1331 172 57 14 chr3 65883122 65883419 -161641159 + MLT1A1 LTR MaLR 56 365 0 2152 115 4 0 chr3 65883436 65883715 -161640863 - AluSx SINE Alu -32 280 1 511 96 0 0 chr3 65883787 65883860 -161640718 + Alu SINE Alu 237 309 -2 623 241 8 81 chr3 65884652 65884875 -161639703 - MIR SINE MIR -31 177 21 335 291 36 36 chr3 65885435 65885600 -161638978 - MLT1K LTR MaLR -324 264 100 1273 161 14 9 chr3 65885782 65886000 -161638578 - MER20 DNA MER1_type 0 219 1 1206 138 16 37 chr3 65886006 65886195 -161638383 + AluSq SINE Alu 1 185 -128 1958 106 49 0 chr3 65886365 65886629 -161637949 - AluSc SINE Alu -32 277 1 448 146 21 62 chr3 65886673 65886769 -161637809 + MLT1F1 LTR MaLR 43 134 -433 481 281 27 0 chr3 65886769 65886915 -161637663 + L1MD3 LINE L1 7411 7560 -435 1058 182 0 0 chr3 65886916 65887086 -161637492 + FAM SINE Alu 1 170 -5 300 174 50 220 chr3 65887087 65887183 -161637395 - L1MC3 LINE L1 -236 7759 7648 1794 122 78 11 chr3 65887183 65887453 -161637125 + AluSg SINE Alu 3 290 -20 2163 97 0 47 chr3 65887457 65887603 -161636975 + AluSq SINE Alu 1 152 -164 2124 116 35 0 chr3 65887603 65887888 -161636690 + AluSg SINE Alu 1 295 -15 2163 97 0 47 chr3 65887888 65888071 -161636507 + AluSq SINE Alu 152 316 0 1530 191 25 4 chr3 65888074 65888351 -161636227 - AluJo SINE Alu -24 288 6 300 174 50 220 chr3 65888351 65888462 -161636116 - L1MC3 LINE L1 -352 7643 7367 1716 107 165 0 chr3 65888474 65888735 -161635843 - AluJo SINE Alu -8 304 1 2380 82 0 10 chr3 65889326 65889632 -161634946 - AluSg SINE Alu -7 303 1 983 171 6 24 chr3 65889637 65889807 -161634771 - FRAM SINE Alu -8 168 2 212 293 69 0 chr3 65889810 65889868 -161634710 + MIR SINE MIR 110 171 -91 346 114 11 148 chr3 65890127 65890160 -161634418 + MER45A DNA AcHobo 78 114 -1467 1747 166 3 20 chr3 65890160 65890318 -161634260 - AluJb SINE Alu -21 291 132 255 31 0 0 chr3 65890318 65890350 -161634228 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 2172 117 0 0 chr3 65890350 65890631 -161633947 - AluSx SINE Alu -31 281 1 1747 166 3 20 chr3 65890631 65890767 -161633811 - AluJb SINE Alu -178 134 1 346 114 11 148 chr3 65890767 65890821 -161633757 + MER45A DNA AcHobo 114 153 -25 2476 143 62 0 chr3 65891301 65891720 -161632858 + MER83 LTR ERV1 4 448 0 364 346 92 0 chr3 65892208 65892338 -161632240 + MIR SINE MIR 6 147 -115 2128 128 24 0 chr3 65892362 65892660 -161631918 - AluSx SINE Alu -4 308 4 888 261 43 22 chr3 65892800 65893030 -161631548 - MIR SINE MIR -21 241 7 1144 138 0 0 chr3 65893145 65893305 -161631273 - AluSg/x SINE Alu -18 294 135 2217 94 3 17 chr3 65893305 65893602 -161630976 - AluSx SINE Alu -9 303 11 653 258 71 5 chr3 65893643 65893841 -161630737 - MIR SINE MIR -5 257 47 2352 106 0 0 chr3 65894485 65894788 -161629790 - AluSx SINE Alu -9 303 1 657 152 66 53 chr3 65894790 65894941 -161629637 + L1MB4 LINE L1 6028 6180 0 482 240 45 127 chr3 65894958 65895179 -161629399 - L1MC5 LINE L1 -39 7922 7720 2503 142 75 42 chr3 65895180 65895700 -161628878 - MER21A LTR ERV1 0 931 395 2320 90 0 10 chr3 65895703 65896002 -161628576 - AluSc SINE Alu -8 301 6 1056 124 17 53 chr3 65896006 65896228 -161628350 - MER21A LTR ERV1 -284 369 75 * 1905 133 0 7 chr3 65896225 65896519 -161628059 + MER50 LTR ERV1 420 711 -23 370 264 27 9 chr3 65896520 65896542 -161628036 - L2 LINE L2 -275 3038 3018 1667 214 93 30 chr3 65896542 65896981 -161627597 + MLT1C LTR MaLR 1 467 0 370 264 27 9 chr3 65896981 65897068 -161627510 - L2 LINE L2 -295 3018 2927 1805 163 11 0 chr3 65897099 65897375 -161627203 - AluJb SINE Alu -33 279 1 2448 96 0 3 chr3 65897391 65897703 -161626875 - AluY SINE Alu 0 311 1 1970 94 0 0 chr3 65897725 65897969 -161626609 - AluSx SINE Alu -30 282 39 2390 84 3 3 chr3 65898253 65898550 -161626028 + AluSc SINE Alu 1 297 -12 26 0 0 0 chr3 65898892 65898918 -161625660 + AT_rich Low_complexity Low_complexity 1 26 0 3057 116 20 113 chr3 65898932 65899570 -161625008 - L1MB3 LINE L1 0 6183 5605 1366 199 10 35 chr3 65900330 65900642 -161623936 - AluJb SINE Alu -8 304 1 856 180 80 134 chr3 65901030 65901173 -161623405 + L1MC5 LINE L1 7454 7603 -358 2144 94 11 0 chr3 65901173 65901472 -161623106 + AluSc SINE Alu 1 302 0 856 180 80 134 chr3 65901472 65901797 -161622781 + L1MC5 LINE L1 7603 7944 -17 2325 82 7 0 chr3 65901797 65902090 -161622488 - AluSg SINE Alu -15 295 1 2182 114 7 0 chr3 65902090 65902379 -161622199 - AluSq SINE Alu -22 291 1 2159 127 7 19 chr3 65902379 65902687 -161621891 - AluSq SINE Alu -9 304 1 856 180 80 134 chr3 65902687 65902713 -161621865 + L1MC5 LINE L1 7899 7925 -36 1385 193 45 22 chr3 65902736 65903047 -161621531 + L1MDa LINE L1 18 335 -6205 389 298 46 30 chr3 65903916 65904047 -161620531 + MIR SINE MIR 21 153 -109 1117 202 89 8 chr3 65904054 65904301 -161620277 + Tigger7 DNA MER2_type 1 267 -466 317 300 0 10 chr3 65904299 65904399 -161620179 + Tigger7 DNA MER2_type 2389 2487 0 * 1828 160 13 13 chr3 65904443 65904749 -161619829 + AluJb SINE Alu 5 310 -2 729 171 8 0 chr3 65904967 65905096 -161619482 - FLAM_C SINE Alu -1 132 3 584 185 113 2 chr3 65905820 65905964 -161618614 + MIR SINE MIR 41 198 -62 1125 66 7 7 chr3 65906169 65906321 -161618257 + L1PA10 LINE L1 6016 6167 -1 2006 130 30 13 chr3 65906328 65906462 -161618116 + AluSp SINE Alu 2 132 -181 2206 114 3 0 chr3 65906462 65906760 -161617818 + AluSx SINE Alu 1 299 -13 2006 130 30 13 chr3 65906760 65906959 -161617619 + AluSp SINE Alu 132 313 0 733 217 26 37 chr3 65907042 65907248 -161617330 + MER33 DNA MER1_type 1 201 -2384 556 254 0 0 chr3 65907248 65907362 -161617216 - MER81 DNA DNA 0 114 1 733 217 26 37 chr3 65907362 65907401 -161617177 + MER33 DNA MER1_type 201 241 -2344 2271 112 16 0 chr3 65907401 65907705 -161616873 - AluSx SINE Alu -2 310 2 733 217 26 37 chr3 65907705 65907720 -161616858 + MER33 DNA MER1_type 241 255 -69 456 151 12 12 chr3 65908157 65908243 -161616335 + Tigger3(Golem) DNA MER2_type 126 211 -2818 615 68 0 0 chr3 65908285 65908394 -161616184 + AluSp/q SINE Alu 217 325 0 1613 116 0 5 chr3 65908405 65908621 -161615957 + AluJb SINE Alu 3 217 -95 428 233 188 55 chr3 65908979 65909181 -161615397 - MLT1L LTR MaLR -5 610 382 1902 151 0 32 chr3 65909324 65909635 -161614943 + AluJb SINE Alu 1 301 -11 392 74 0 0 chr3 65909635 65909689 -161614889 + L1MA3 LINE L1 6252 6305 0 2426 75 0 7 chr3 65909969 65910276 -161614302 - AluY SINE Alu -6 305 1 1941 149 27 0 chr3 65910276 65910572 -161614006 - AluJb SINE Alu -4 308 5 1711 133 42 56 chr3 65910650 65910965 -161613613 - AluJb SINE Alu 0 311 1 1629 159 35 52 chr3 65911518 65911807 -161612771 + AluJb SINE Alu 1 284 -28 2041 193 63 69 chr3 65911839 65912126 -161612452 - L1ME1 LINE L1 -7 6159 5872 2159 125 3 7 chr3 65912126 65912422 -161612156 - AluSx SINE Alu -17 295 1 2041 193 63 69 chr3 65912422 65912586 -161611992 - L1ME1 LINE L1 -294 5872 5709 2303 114 0 0 chr3 65912586 65912892 -161611686 - AluSx SINE Alu -6 306 1 2041 193 63 69 chr3 65912892 65913106 -161611472 - L1ME1 LINE L1 -457 5709 5497 339 56 74 0 chr3 65913133 65913187 -161611391 - AluSp/q SINE Alu -5 298 241 398 191 83 0 chr3 65913267 65913351 -161611227 - MIR SINE MIR -119 143 53 375 250 9 9 chr3 65913357 65913465 -161611113 - MLT1K LTR MaLR 0 588 481 3482 153 37 61 chr3 65914936 65915644 -161608934 - LTR8 LTR ERV1 0 691 1 2320 108 7 0 chr3 65915791 65916097 -161608481 - AluSx SINE Alu -4 308 1 296 227 55 31 chr3 65916489 65916617 -161607961 + MER113 DNA MER1_type? 73 203 -318 351 194 106 100 chr3 65916662 65916747 -161607831 + MER113 DNA MER1_type? 205 288 -233 270 0 0 0 chr3 65916747 65916777 -161607801 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 2222 96 4 0 chr3 65916781 65917061 -161607517 - AluSq SINE Alu -32 281 1 351 194 106 100 chr3 65917061 65917130 -161607448 + MER113 DNA MER1_type? 290 365 -156 1535 156 59 24 chr3 65917174 65917462 -161607116 - AluJo SINE Alu -14 298 1 452 149 0 0 chr3 65917680 65917747 -161606831 + AluJ/FLAM SINE Alu 2 68 -244 672 126 0 54 chr3 65917753 65917864 -161606714 - FRAM SINE Alu -9 167 63 445 137 0 0 chr3 65917879 65917952 -161606626 + FLAM_A SINE Alu 70 142 0 2019 136 25 0 chr3 65918597 65918883 -161605695 + AluSq SINE Alu 1 293 -20 2229 112 0 3 chr3 65919225 65919529 -161605049 - AluSx SINE Alu -9 303 1 332 200 255 65 chr3 65919715 65919915 -161604663 - MIR SINE MIR -5 257 20 1063 175 0 6 chr3 65921083 65921254 -161603324 - AluJb SINE Alu -9 303 134 1521 172 0 15 chr3 65921254 65921516 -161603062 - AluJb SINE Alu -13 299 42 1489 119 57 0 chr3 65921880 65922090 -161602488 - AluSg/x SINE Alu -7 305 84 257 208 19 0 chr3 65922098 65922151 -161602427 - MLT1K LTR MaLR -13 575 522 548 259 108 73 chr3 65922183 65922554 -161602024 - MLT1K LTR MaLR -18 570 187 1798 165 6 22 chr3 65923055 65923170 -161601408 + AluJo SINE Alu 1 116 -196 221 0 35 0 chr3 65923170 65923199 -161601379 + (CAAA)n Simple_repeat Simple_repeat 4 33 0 1798 165 6 22 chr3 65923199 65923398 -161601180 + AluJo SINE Alu 116 310 -2 1562 108 36 0 chr3 65924103 65924325 -161600253 - MER30 DNA MER1_type 0 230 1 2244 127 3 0 chr3 65924460 65924767 -161599811 + AluSx SINE Alu 1 308 -4 360 229 78 96 chr3 65924784 65924950 -161599628 - MIR3 SINE MIR -13 195 33 1684 154 64 31 chr3 65925087 65925195 -161599383 - L1MB7 LINE L1 -12 6172 6069 2032 117 57 0 chr3 65925195 65925477 -161599101 - AluSg SINE Alu -12 298 1 1684 154 64 31 chr3 65925477 65925725 -161598853 - L1MB7 LINE L1 -115 6069 5804 304 161 0 16 chr3 65926121 65926183 -161598395 - FLAM_A SINE Alu -1 132 72 521 242 25 75 chr3 65926187 65926312 -161598266 - L1MC4 LINE L1 -24 8018 7909 2140 118 34 0 chr3 65926312 65926608 -161597970 - AluSx SINE Alu -6 306 1 521 242 25 75 chr3 65926608 65926722 -161597856 - L1MC4 LINE L1 -133 7909 7791 349 259 88 107 chr3 65926736 65926952 -161597626 - L1MC4 LINE L1 -226 7816 7605 452 34 0 0 chr3 65927074 65927133 -161597445 + AluSp/q SINE Alu 243 301 -12 2143 128 7 0 chr3 65927477 65927775 -161596803 - AluSx SINE Alu -12 300 1 1942 187 39 124 chr3 65927839 65927892 -161596686 + L1ME1 LINE L1 5526 5582 -584 307 0 0 0 chr3 65927892 65927926 -161596652 + (TTTG)n Simple_repeat Simple_repeat 2 152 0 1428 176 0 57 chr3 65927926 65928078 -161596500 - AluSx SINE Alu -1 317 158 2344 113 0 0 chr3 65928078 65928378 -161596200 - AluSq SINE Alu -10 303 4 2300 85 0 0 chr3 65928388 65928683 -161595895 - AluSc SINE Alu -14 295 1 1428 176 0 57 chr3 65928683 65928820 -161595758 - AluSx SINE Alu -169 149 1 1942 187 39 124 chr3 65928820 65929285 -161595293 + L1ME1 LINE L1 5581 6084 -82 1747 178 0 0 chr3 65929285 65929583 -161594995 - AluJb SINE Alu -14 298 1 1942 187 39 124 chr3 65929583 65929645 -161594933 + L1ME1 LINE L1 6084 6042 -124 282 116 0 0 chr3 65929645 65929688 -161594890 + (CA)n Simple_repeat Simple_repeat 2 44 0 1942 187 39 124 chr3 65929688 65929803 -161594775 + L1ME1 LINE L1 6041 6164 -2 2118 114 0 0 chr3 65929850 65930149 -161594429 - AluSx SINE Alu -13 299 1 180 0 0 0 chr3 65930629 65930649 -161593929 + (GGGGA)n Simple_repeat Simple_repeat 4 23 0 194 215 13 165 chr3 65930965 65931004 -161593574 - MIR SINE MIR -42 220 197 2282 72 7 0 chr3 65931004 65931294 -161593284 - AluSg SINE Alu -17 293 2 194 215 13 165 chr3 65931294 65931333 -161593245 - MIR SINE MIR -65 197 154 2278 105 0 0 chr3 65931641 65931954 -161592624 + AluSq SINE Alu 1 313 0 1642 179 36 0 chr3 65931966 65932267 -161592311 + AluJb SINE Alu 1 312 0 240 274 134 131 chr3 65932328 65932384 -161592194 + L2 LINE L2 2976 3030 -283 967 177 0 0 chr3 65932384 65932542 -161592036 + FRAM SINE Alu 1 158 -8 2247 89 3 3 chr3 65932548 65932851 -161591727 + AluSx SINE Alu 1 303 -9 240 274 134 131 chr3 65932851 65933123 -161591455 + L2 LINE L2 3034 3312 -1 248 369 0 25 chr3 65933139 65933261 -161591317 + MIR SINE MIR 49 167 -95 309 353 68 0 chr3 65933319 65933452 -161591126 - L2 LINE L2 -8 3264 3123 2149 95 0 7 chr3 65933472 65933768 -161590810 - AluSp SINE Alu -19 294 1 302 227 196 0 chr3 65933806 65933903 -161590675 - MIR SINE MIR -48 214 99 773 114 0 0 chr3 65933908 65934013 -161590565 + AluSg/x SINE Alu 199 303 -9 1748 140 17 10 chr3 65934016 65934308 -161590270 + L1MB7 LINE L1 5629 5922 -262 22 0 0 0 chr3 65934308 65934330 -161590248 + AT_rich Low_complexity Low_complexity 1 22 0 1908 102 0 0 chr3 65934330 65934585 -161589993 - AluSg SINE Alu -55 255 1 1321 113 0 0 chr3 65934588 65934774 -161589804 - AluSq SINE Alu -11 302 117 232 229 131 82 chr3 65934853 65934975 -161589603 - MIR SINE MIR -122 140 13 370 162 21 10 chr3 65934977 65935076 -161589502 - L1ME LINE L1 -5182 888 798 1978 132 0 10 chr3 65935292 65935595 -161588983 + AluSq SINE Alu 3 302 -11 936 115 0 0 chr3 65935796 65935935 -161588643 + AluSg/x SINE Alu 168 306 -4 460 306 33 13 chr3 65935942 65936142 -161588436 - MIR SINE MIR -42 220 18 2178 61 18 0 chr3 65936186 65936492 -161588086 + AluSx SINE Alu 1 311 0 351 246 69 15 chr3 65936554 65936715 -161587863 + MIR SINE MIR 6 177 -63 1188 271 63 16 chr3 65937080 65937526 -161587052 - MLT1K LTR MaLR -2 586 120 402 249 232 38 chr3 65937554 65937739 -161586839 - MIR SINE MIR -3 259 39 1890 187 25 118 chr3 65937857 65937929 -161586649 - MLT1D LTR MaLR 0 505 428 1969 120 30 10 chr3 65937929 65938228 -161586350 + AluSx SINE Alu 1 305 -7 1890 187 25 118 chr3 65938228 65938252 -161586326 - MLT1D LTR MaLR -77 428 403 1476 169 32 3 chr3 65938252 65938536 -161586042 + AluJb SINE Alu 11 302 -10 1890 187 25 118 chr3 65938536 65938995 -161585583 - MLT1D LTR MaLR -102 403 1 244 200 110 80 chr3 65939000 65939100 -161585478 + MIR SINE MIR 21 123 -139 621 228 21 28 chr3 65939208 65939353 -161585225 + MIR SINE MIR 111 254 -8 1106 285 75 6 chr3 65939364 65939722 -161584856 - LTR16C LTR ERVL 0 491 109 1986 131 0 0 chr3 65939732 65940148 -161584430 + AluJb SINE Alu 1 416 0 992 92 0 0 chr3 65940670 65940801 -161583777 + AluSc SINE Alu 1 131 -178 2172 75 3 27 chr3 65940808 65941102 -161583476 + AluY SINE Alu 1 287 -24 197 0 71 0 chr3 65941106 65941134 -161583444 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 925 182 0 0 chr3 65941770 65941940 -161582638 - AluSg/x SINE Alu -9 301 132 2132 100 13 0 chr3 65941940 65942239 -161582339 - AluSq SINE Alu -10 303 1 546 232 65 26 chr3 65942239 65942394 -161582184 + MIR SINE MIR 78 238 -24 2318 73 0 7 chr3 65942744 65943045 -161581533 - AluSc SINE Alu -10 299 1 212 403 25 25 chr3 65943070 65943189 -161581389 - L2 LINE L2 -25 3247 3129 200 143 114 0 chr3 65943238 65943273 -161581305 + L2 LINE L2 3267 3305 -8 221 194 0 0 chr3 65943416 65943452 -161581126 + A-rich Low_complexity Low_complexity 1 36 0 426 39 0 0 chr3 65944306 65944358 -161580220 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 201 361 136 43 chr3 65944374 65944676 -161579902 - L2 LINE L2 -19 3253 2924 2196 100 0 0 chr3 65944812 65945102 -161579476 - AluSg SINE Alu -20 290 1 2291 93 7 0 chr3 65946731 65947041 -161577537 - AluSp SINE Alu -1 312 1 1815 180 0 0 chr3 65947318 65947629 -161576949 - AluJb SINE Alu -1 311 1 1979 106 14 3 chr3 65947699 65947991 -161576587 - AluSx SINE Alu -4 308 14 327 378 14 20 chr3 65952052 65952200 -161572378 + MIR3 SINE MIR 2 148 -60 710 268 50 39 chr3 65952458 65952738 -161571840 + MARNA DNA Mariner 85 367 -219 2241 92 0 0 chr3 65952785 65953078 -161571500 + AluSq SINE Alu 1 293 -20 287 289 213 24 chr3 65953095 65953475 -161571103 + L1ME4a LINE L1 5598 6049 -72 1320 168 43 12 chr3 65953487 65953743 -161570835 - AluJb SINE Alu -8 304 41 2200 86 20 0 chr3 65954092 65954396 -161570182 - AluSp SINE Alu -3 310 1 357 359 147 6 chr3 65954448 65954604 -161569974 - L2 LINE L2 0 3272 3095 2060 99 7 3 chr3 65954911 65955214 -161569364 - AluSc SINE Alu -5 304 1 2188 93 13 0 chr3 65955516 65955816 -161568762 + AluSp SINE Alu 2 305 -8 240 163 0 0 chr3 65955829 65955872 -161568706 + A-rich Low_complexity Low_complexity 5 47 0 700 203 0 0 chr3 65956480 65956613 -161567965 - FLAM_C SINE Alu 0 133 1 1453 105 4 77 chr3 65956955 65957202 -161567376 + AluSx SINE Alu 1 229 -83 21 36 0 0 chr3 65957202 65957230 -161567348 + AT_rich Low_complexity Low_complexity 1 28 0 1213 170 0 14 chr3 65957259 65957477 -161567101 + AluJo SINE Alu 27 241 -71 23 33 0 0 chr3 65957485 65957515 -161567063 + AT_rich Low_complexity Low_complexity 1 30 0 334 148 0 33 chr3 65957515 65957576 -161567002 - MLT1F1 LTR MaLR -6 561 503 2297 75 17 0 chr3 65957576 65957871 -161566707 + AluSx SINE Alu 1 300 -12 26 0 0 0 chr3 65958213 65958239 -161566339 + AT_rich Low_complexity Low_complexity 1 26 0 3056 116 20 113 chr3 65958253 65958891 -161565687 - L1MB3 LINE L1 0 6183 5605 1223 197 10 36 chr3 65959654 65959963 -161564615 - AluJb SINE Alu -11 301 1 847 196 109 117 chr3 65960291 65960494 -161564084 + L1MC5 LINE L1 7381 7584 -377 2055 94 7 0 chr3 65960494 65960794 -161563784 + AluSc SINE Alu 1 302 0 847 196 109 117 chr3 65960794 65961110 -161563468 + L1MC5 LINE L1 7584 7897 -64 2185 82 7 0 chr3 65961118 65961411 -161563167 - AluSg SINE Alu -15 295 1 2035 114 7 0 chr3 65961411 65961700 -161562878 - AluSq SINE Alu -22 291 1 1771 118 7 22 chr3 65961700 65961971 -161562607 - AluSq SINE Alu -8 305 39 2243 84 3 3 chr3 65962254 65962551 -161562027 + AluSc SINE Alu 1 297 -12 26 0 0 0 chr3 65962893 65962919 -161561659 + AT_rich Low_complexity Low_complexity 1 26 0 1673 153 36 0 chr3 65962933 65963207 -161561371 - L1MB3 LINE L1 0 6183 5900 1962 144 19 22 chr3 65963244 65963605 -161560973 - L1MB3 LINE L1 -247 5936 5577 2336 100 0 0 chr3 65964503 65964814 -161559764 - AluSx SINE Alu -1 311 1 1105 202 27 31 chr3 65964814 65965072 -161559506 + MLT1D LTR MaLR 249 505 0 296 342 0 17 chr3 65965137 65965254 -161559324 + L2 LINE L2 3179 3293 -20 213 152 0 91 chr3 65965515 65965581 -161558997 + (CGGGG)n Simple_repeat Simple_repeat 4 63 0 259 178 178 0 chr3 65966841 65966914 -161557664 - MIR SINE MIR -63 145 60 264 137 0 0 chr3 65967278 65967329 -161557249 + (TG)n Simple_repeat Simple_repeat 1 51 0 1966 104 7 0 chr3 65968122 65968400 -161556178 - AluSg SINE Alu -30 280 1 2200 86 13 10 chr3 65969117 65969419 -161555159 + AluSx SINE Alu 1 303 -9 225 282 153 16 chr3 65969519 65969643 -161554935 - MIR SINE MIR -105 157 17 1981 121 7 0 chr3 65970730 65971019 -161553559 + AluSp SINE Alu 1 291 -22 732 218 185 5 chr3 65971105 65971316 -161553262 + MIR SINE MIR 9 257 -5 275 293 57 42 chr3 65971542 65971754 -161552824 - L3 LINE CR1 -15 1562 1348 2262 87 3 0 chr3 65971914 65972213 -161552365 - AluSg SINE Alu -10 300 1 655 269 53 10 chr3 65972261 65972469 -161552109 + MIR SINE MIR 5 221 -41 193 294 59 24 chr3 65972515 65972600 -161551978 - L3 LINE CR1 -773 804 717 286 254 123 23 chr3 65972659 65972789 -161551789 - L2 LINE L2 -6 3307 3165 264 200 233 42 chr3 65972814 65972934 -161551644 - MER5A DNA MER1_type -8 181 39 286 238 19 76 chr3 65972984 65973089 -161551489 - L2 LINE L2 -189 3083 2985 1836 122 23 16 chr3 65973235 65973539 -161551039 - AluSq SINE Alu -7 306 1 249 98 0 0 chr3 65973653 65973694 -161550884 + (TA)n Simple_repeat Simple_repeat 2 42 0 445 235 118 0 chr3 65973713 65973849 -161550729 - Charlie7 DNA MER1_type -2455 157 6 2195 99 0 7 chr3 65974435 65974738 -161549840 - AluSp SINE Alu -12 301 1 656 138 26 9 chr3 65975388 65975504 -161549074 + LTR56 LTR ERV1 1 118 -327 1172 133 0 0 chr3 65975511 65975692 -161548886 - AluSc SINE Alu -5 304 124 2033 123 0 7 chr3 65975692 65976000 -161548578 - AluSx SINE Alu -6 306 1 1482 191 17 35 chr3 65976000 65976029 -161548549 + LTR56 LTR ERV1 111 139 -298 1330 172 30 53 chr3 65976029 65976331 -161548247 + AluJo SINE Alu 1 295 -17 1482 191 17 35 chr3 65976331 65976664 -161547914 + LTR56 LTR ERV1 139 437 0 249 139 0 0 chr3 65976666 65976702 -161547876 - MIR SINE MIR -114 148 113 432 0 0 0 chr3 65977231 65977279 -161547299 + (TG)n Simple_repeat Simple_repeat 2 49 0 1761 154 13 7 chr3 65978948 65979254 -161545324 - AluJo SINE Alu -4 308 1 307 315 144 9 chr3 65979302 65979413 -161545165 + L2 LINE L2 3142 3267 -5 405 258 31 23 chr3 65979756 65979884 -161544694 - MIR SINE MIR -20 242 114 2054 103 14 0 chr3 65980001 65980293 -161544285 - AluSg SINE Alu -14 296 1 1613 133 107 0 chr3 65980293 65980563 -161544015 - AluSx SINE Alu -13 299 1 288 276 111 89 chr3 65981378 65981603 -161542975 + MIR SINE MIR 32 261 -1 2044 121 10 0 chr3 65981882 65982180 -161542398 - AluSc SINE Alu -8 301 1 330 297 7 29 chr3 65982180 65982291 -161542287 + CT-rich Low_complexity Low_complexity 5 114 -25 1721 168 7 0 chr3 65982291 65982600 -161541978 - AluJb SINE Alu -1 311 1 330 297 7 29 chr3 65982600 65982626 -161541952 + CT-rich Low_complexity Low_complexity 114 139 0 1507 167 11 0 chr3 65982848 65983111 -161541467 + AluSx SINE Alu 34 299 -13 312 305 32 0 chr3 65983115 65983210 -161541368 + MIR SINE MIR 159 256 -6 1501 153 46 7 chr3 65984327 65984609 -161539969 - AluSg SINE Alu -17 293 1 993 121 0 0 chr3 65984610 65984750 -161539828 - AluSq/x SINE Alu -173 140 1 211 268 216 21 chr3 65984751 65984848 -161539730 + MIR3 SINE MIR 45 160 -48 1396 178 95 59 chr3 65984850 65985272 -161539306 + MER113 DNA MER1_type? 3 439 -82 21 0 0 0 chr3 65985552 65985573 -161539005 + AT_rich Low_complexity Low_complexity 1 21 0 1574 156 48 38 chr3 65985643 65985766 -161538812 + AluJb SINE Alu 1 121 -191 236 53 26 0 chr3 65985766 65985804 -161538774 + (CA)n Simple_repeat Simple_repeat 1 39 0 1574 156 48 38 chr3 65985804 65985969 -161538609 + AluJb SINE Alu 121 292 -20 305 217 29 14 chr3 65986217 65986286 -161538292 + MIR SINE MIR 112 181 -81 467 311 97 10 chr3 65986306 65986512 -161538066 + MIR SINE MIR 7 230 -32 2065 123 3 16 chr3 65987115 65987431 -161537147 - AluSq SINE Alu -1 312 1 365 250 0 50 chr3 65988055 65988155 -161536423 - MER117 DNA MER1_type -35 162 68 2047 72 76 3 chr3 65988495 65988785 -161535793 - AluY SINE Alu 0 311 1 1195 171 37 0 chr3 65989850 65990066 -161534512 + AluJb SINE Alu 76 299 -13 1965 131 0 10 chr3 65990140 65990452 -161534126 - AluSx SINE Alu -3 309 1 967 177 0 0 chr3 65990458 65990616 -161533962 - FRAM SINE Alu -8 158 1 1617 183 36 0 chr3 65990733 65991034 -161533544 - AluJb SINE Alu 0 312 1 2294 102 0 0 chr3 65991046 65991359 -161533219 - AluSq SINE Alu 0 313 1 203 167 28 0 chr3 65991667 65991703 -161532875 + MIR SINE MIR 154 190 -72 2270 76 7 0 chr3 65991707 65991997 -161532581 + AluSg SINE Alu 2 293 -17 180 0 0 0 chr3 65992352 65992372 -161532206 + (TCCCC)n Simple_repeat Simple_repeat 4 23 0 2056 124 0 0 chr3 65992852 65993151 -161531427 + AluSx SINE Alu 1 299 -13 2041 193 38 109 chr3 65993198 65993302 -161531276 - L1ME1 LINE L1 -2 6164 6054 216 0 0 0 chr3 65993302 65993326 -161531252 + (TA)n Simple_repeat Simple_repeat 2 25 0 * 321 118 0 0 chr3 65993325 65993376 -161531202 + (TG)n Simple_repeat Simple_repeat 2 52 0 2041 193 38 109 chr3 65993326 65993438 -161531140 - L1ME1 LINE L1 -112 6054 5936 1747 178 0 0 chr3 65993438 65993736 -161530842 + AluJb SINE Alu 1 298 -14 2041 193 38 109 chr3 65993736 65994201 -161530377 - L1ME1 LINE L1 -230 5936 5439 1429 176 0 57 chr3 65994201 65994338 -161530240 + AluSx SINE Alu 1 144 -170 2306 85 0 0 chr3 65994338 65994633 -161529945 + AluSc SINE Alu 1 295 -14 2191 113 0 0 chr3 65994643 65994943 -161529635 + AluSq SINE Alu 4 303 -10 1429 176 0 57 chr3 65994943 65995125 -161529453 + AluSx SINE Alu 153 314 0 2041 193 38 109 chr3 65995125 65995178 -161529400 - L1ME1 LINE L1 -726 5440 5526 1971 131 7 0 chr3 65995242 65995540 -161529038 + AluSx SINE Alu 1 300 -12 2236 91 10 0 chr3 65995884 65996182 -161528396 - AluSp SINE Alu -12 301 1 1642 172 40 0 chr3 65996529 65996826 -161527752 - AluSx SINE Alu -3 309 1 1899 93 0 0 chr3 65996848 65997105 -161527473 - AluY SINE Alu -2 309 53 1857 116 21 3 chr3 65997205 65997490 -161527088 + AluSq SINE Alu 14 303 -10 1450 217 181 31 chr3 65997495 65997909 -161526669 - MLT1F LTR MaLR -60 482 7 2264 94 0 0 chr3 65998013 65998321 -161526257 + AluY SINE Alu 1 308 -3 1015 95 13 25 chr3 65998523 65998681 -161525897 + AluSg/x SINE Alu 154 309 -1 288 276 111 89 chr3 65998960 65999185 -161525393 - MIR SINE MIR -1 261 32 1577 140 107 0 chr3 66000000 66000271 -161524307 + AluSx SINE Alu 1 300 -12 1989 113 14 0 chr3 66000271 66000563 -161524015 + AluSg SINE Alu 1 296 -14 405 258 31 23 chr3 66000680 66000808 -161523770 + MIR SINE MIR 114 242 -20 307 315 144 9 chr3 66001151 66001262 -161523316 - L2 LINE L2 -5 3267 3142 1761 154 13 7 chr3 66001310 66001616 -161522962 + AluJo SINE Alu 1 308 -4 312 305 32 0 chr3 66002420 66002515 -161522063 - MIR SINE MIR -6 256 159 1800 124 8 0 chr3 66002519 66002784 -161521794 - AluSx SINE Alu -12 300 34 184 154 0 39 chr3 66003005 66003031 -161521547 + A-rich Low_complexity Low_complexity 5 30 -24 1767 169 0 10 chr3 66003031 66003345 -161521233 + AluJb SINE Alu 1 311 -1 184 154 0 39 chr3 66003345 66003370 -161521208 + A-rich Low_complexity Low_complexity 30 54 0 2274 95 0 0 chr3 66003453 66003759 -161520819 + AluSc SINE Alu 1 306 -3 506 118 75 161 chr3 66004558 66004744 -161519834 + MER53 DNA DNA 17 186 -3 697 276 42 48 chr3 66005049 66005360 -161519218 + L1MC4 LINE L1 7229 7537 -505 346 241 13 0 chr3 66005366 66005445 -161519133 + MER5A DNA MER1_type 27 106 -83 389 276 29 0 chr3 66005902 66006007 -161518571 - MIR SINE MIR -44 218 111 1821 120 16 36 chr3 66006084 66006393 -161518185 + AluSg SINE Alu 1 303 -7 1515 150 3 91 chr3 66006805 66006981 -161517597 - AluJo SINE Alu -20 292 155 1890 137 3 13 chr3 66006981 66007281 -161517297 + AluSq SINE Alu 1 297 -16 1515 150 3 91 chr3 66007281 66007424 -161517154 - AluJo SINE Alu -157 155 1 21 0 0 0 chr3 66007494 66007515 -161517063 + AT_rich Low_complexity Low_complexity 1 21 0 1381 180 95 59 chr3 66007795 66008217 -161516361 - MER113 DNA MER1_type? -82 439 3 211 268 216 21 chr3 66008219 66008316 -161516262 - MIR3 SINE MIR -48 160 45 993 121 0 0 chr3 66008317 66008457 -161516121 + AluSq/x SINE Alu 1 140 -172 1484 148 42 11 chr3 66008458 66008742 -161515836 + AluSg SINE Alu 1 293 -17 2170 92 3 0 chr3 66009798 66010140 -161514438 - AluSx SINE Alu 0 343 1 207 69 0 0 chr3 66010143 66010172 -161514406 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2372 93 0 0 chr3 66010193 66010505 -161514073 - AluSx SINE Alu 0 312 1 180 97 0 0 chr3 66011015 66011046 -161513532 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 339 25 0 0 chr3 66012073 66012113 -161512465 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 469 184 184 0 chr3 66012408 66012506 -161512072 + MER45A DNA AcHobo 2 117 -61 1767 268 20 43 chr3 66012528 66013035 -161511543 - MLT1E LTR MaLR -44 549 55 859 253 6 0 chr3 66013090 66013256 -161511322 + MER5A DNA MER1_type 23 189 0 422 192 39 0 chr3 66013624 66013702 -161510876 + MER45A DNA AcHobo 98 178 0 24 0 0 0 chr3 66013880 66013904 -161510674 + AT_rich Low_complexity Low_complexity 1 24 0 198 272 108 44 chr3 66014282 66014440 -161510138 - L2 LINE L2 -263 3009 2842 302 335 32 38 chr3 66015040 66015198 -161509380 + L1MC/D LINE L1 5448 5604 -2204 207 235 0 0 chr3 66015246 66015297 -161509281 + (CA)n Simple_repeat Simple_repeat 2 52 0 1752 137 0 20 chr3 66015394 66015687 -161508891 - AluJb SINE Alu -25 287 1 429 231 98 30 chr3 66015690 66015893 -161508685 - L1MC5 LINE L1 -44 7917 7701 285 130 14 72 chr3 66018078 66018147 -161506431 + MER116 DNA Mariner 1 65 -15 2359 78 0 0 chr3 66018182 66018477 -161506101 - AluSg SINE Alu -15 295 1 2205 101 3 0 chr3 66019421 66019718 -161504860 - AluSg SINE Alu -12 298 1 1857 132 0 20 chr3 66019718 66020021 -161504557 - AluSq SINE Alu -16 297 1 201 241 24 96 chr3 66020952 66021035 -161503543 - MIR SINE MIR -112 150 74 2203 100 0 13 chr3 66021415 66021725 -161502853 + AluSx SINE Alu 1 306 -6 634 274 36 77 chr3 66021742 66022238 -161502340 - L1MC4 LINE L1 -43 7999 7524 2201 73 13 10 chr3 66022294 66022595 -161501983 - AluSx SINE Alu -9 303 2 483 168 15 14 chr3 66023010 66023133 -161501445 + Tigger3(Golem) DNA MER2_type 2 211 -2818 609 68 0 0 chr3 66023175 66023280 -161501298 + AluSp/q SINE Alu 217 321 0 1523 116 0 5 chr3 66023291 66023507 -161501071 + AluJb SINE Alu 3 217 -95 903 110 0 8 chr3 66023523 66023650 -161500928 - AluSq/x SINE Alu -187 126 1 231 161 97 0 chr3 66023650 66023712 -161500866 - Tigger3(Golem) DNA MER2_type -2766 263 196 234 0 0 0 chr3 66023727 66023753 -161500825 + (TA)n Simple_repeat Simple_repeat 1 26 0 2027 114 3 10 chr3 66023753 66024052 -161500526 - AluSx SINE Alu -15 297 1 2113 115 28 61 chr3 66024052 66024234 -161500344 + Tigger3(Golem) DNA MER2_type 2368 2554 -475 2345 91 0 0 chr3 66024234 66024542 -161500036 - AluSc SINE Alu -1 308 1 2113 115 28 61 chr3 66024542 66024748 -161499830 + Tigger3(Golem) DNA MER2_type 2554 2743 -286 2058 118 0 31 chr3 66024748 66025070 -161499508 - AluSx SINE Alu 0 312 1 2113 115 28 61 chr3 66025070 66025105 -161499473 + Tigger3(Golem) DNA MER2_type 2743 2778 -251 1501 182 36 0 chr3 66025107 66025382 -161499196 - AluJo SINE Alu -23 289 5 903 159 0 0 chr3 66025529 66025661 -161498917 + FLAM_C SINE Alu 2 133 0 202 283 0 19 chr3 66025721 66025774 -161498804 - MER5A DNA MER1_type -7 182 131 562 261 0 6 chr3 66025887 66026048 -161498530 - L1P LINE L1 -2677 3469 3310 591 253 57 16 chr3 66026065 66026259 -161498319 + L1 LINE L1 3903 4104 -2042 1690 139 3 48 chr3 66026264 66026573 -161498005 - AluSx SINE Alu -17 295 1 2973 165 60 24 chr3 66026573 66027156 -161497422 - Tigger3b DNA MER2_type -626 605 2 398 257 0 18 chr3 66027156 66027265 -161497313 + L1MD1 LINE L1 3745 3851 -2295 2378 56 0 23 chr3 66027266 66027571 -161497007 + AluY SINE Alu 1 298 -13 1732 235 106 10 chr3 66027572 66028147 -161496431 + L1MD1 LINE L1 4538 5167 -979 1813 156 37 94 chr3 66028402 66028838 -161495740 + L1MD1 LINE L1 5186 5596 -646 2001 156 0 19 chr3 66028838 66029153 -161495425 + AluJb SINE Alu 1 309 -3 1813 156 37 94 chr3 66029153 66029224 -161495354 + L1MD1 LINE L1 5596 5669 -573 2254 237 63 43 chr3 66029324 66030096 -161494482 - MER21B LTR ERV1 -66 797 5 243 0 0 0 chr3 66030110 66030137 -161494441 + (CA)n Simple_repeat Simple_repeat 1 27 0 2134 173 94 43 chr3 66030138 66030583 -161493995 + L1MD1 LINE L1 5684 6162 -80 1911 92 96 0 chr3 66030583 66030843 -161493735 - AluSx SINE Alu -26 286 2 2134 173 94 43 chr3 66030843 66030929 -161493649 + L1MD1 LINE L1 6162 6242 0 212 196 20 20 chr3 66031544 66031595 -161492983 - MIR SINE MIR -122 140 90 2047 111 0 50 chr3 66031696 66032032 -161492546 - AluSq SINE Alu 0 321 1 226 171 0 0 chr3 66032110 66032151 -161492427 + L2 LINE L2 2919 2959 -354 327 359 38 0 chr3 66032233 66032339 -161492239 + L2 LINE L2 3162 3271 -1 1873 174 0 0 chr3 66032992 66033285 -161491293 - AluSx SINE Alu -19 293 1 2028 134 3 20 chr3 66034798 66035103 -161489475 - AluSx SINE Alu -6 306 7 318 283 64 35 chr3 66035546 66035719 -161488859 - MIR SINE MIR -11 251 74 391 281 156 21 chr3 66035752 66035944 -161488634 - MIR SINE MIR -42 220 3 252 59 0 0 chr3 66036011 66036045 -161488533 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr3 66036840 66036864 -161487714 + AT_rich Low_complexity Low_complexity 1 24 0 923 192 0 13 chr3 66036883 66037039 -161487539 - AluJ SINE Alu -30 282 129 2086 144 6 10 chr3 66037062 66037375 -161487203 - AluSx SINE Alu 0 312 1 800 167 0 0 chr3 66037375 66037495 -161487083 - AluJ SINE Alu -176 136 17 319 113 32 0 chr3 66037500 66037562 -161487016 + MER113 DNA MER1_type? 127 190 -331 248 234 47 0 chr3 66037583 66037647 -161486931 + MER113 DNA MER1_type? 452 518 -3 780 179 0 0 chr3 66040180 66040394 -161484184 + (TCCA)n Simple_repeat Simple_repeat 1 214 0 1153 153 6 0 chr3 66040556 66040732 -161483846 + AluSp SINE Alu 135 311 -2 1074 157 31 16 chr3 66040731 66040922 -161483656 + AluSg/x SINE Alu 118 311 -1 * 428 261 35 9 chr3 66042423 66042538 -161482040 - MIR SINE MIR -51 211 94 1358 110 41 23 chr3 66042933 66043151 -161481427 - MER30 DNA MER1_type -8 222 1 454 347 24 19 chr3 66043623 66043836 -161480742 - MIR SINE MIR -3 259 46 2057 123 0 7 chr3 66043839 66044159 -161480419 + AluSx SINE Alu 1 318 0 26 0 0 0 chr3 66044673 66044699 -161479879 + AT_rich Low_complexity Low_complexity 1 26 0 521 118 0 13 chr3 66044714 66044790 -161479788 + AluS SINE Alu 2 76 -237 225 0 0 0 chr3 66044792 66044817 -161479761 + (TA)n Simple_repeat Simple_repeat 2 26 0 247 246 256 23 chr3 66044874 66045089 -161479489 + L1ME LINE L1 5558 5822 -299 1173 228 9 0 chr3 66045321 66045540 -161479038 + MER58A DNA MER1_type 4 224 0 265 271 212 0 chr3 66045670 66045755 -161478823 - L2 LINE L2 -6 3307 3205 309 208 0 0 chr3 66047833 66047905 -161476673 + (CA)n Simple_repeat Simple_repeat 2 73 0 326 260 98 16 chr3 66048418 66048541 -161476037 + MIR SINE MIR 12 144 -118 400 213 131 0 chr3 66048654 66048776 -161475802 - MER117 DNA MER1_type -54 143 6 1029 206 35 57 chr3 66049814 66050130 -161474448 + Tigger3b DNA MER2_type 297 605 -626 1918 138 0 33 chr3 66050130 66050435 -161474143 + AluSq SINE Alu 1 295 -18 2175 201 83 43 chr3 66050445 66050665 -161473913 - L1MDa LINE L1 -5128 1412 1202 2164 104 0 29 chr3 66050665 66050972 -161473606 - AluSq SINE Alu -15 298 1 2175 201 83 43 chr3 66050972 66051379 -161473199 - L1MDa LINE L1 -5338 1202 760 225 325 97 18 chr3 66051738 66051852 -161472726 - MIR SINE MIR -22 240 118 522 221 257 32 chr3 66052082 66052335 -161472243 - L2 LINE L2 -5 3267 2958 230 198 23 163 chr3 66053269 66053345 -161471233 + MIR SINE MIR 37 55 -153 2269 97 20 0 chr3 66053345 66053643 -161470935 - AluSx SINE Alu -8 304 1 230 198 23 163 chr3 66053643 66053722 -161470856 + MIR SINE MIR 55 143 -65 507 258 94 90 chr3 66054131 66054183 -161470395 - MIR SINE MIR 0 262 212 2243 112 20 0 chr3 66054183 66054478 -161470100 - AluSx SINE Alu -11 301 1 507 258 94 90 chr3 66054478 66054669 -161469909 - MIR SINE MIR -50 212 18 385 255 59 0 chr3 66054884 66054986 -161469592 - MIR SINE MIR -107 155 48 2125 120 7 13 chr3 66055948 66056249 -161468329 - AluSx SINE Alu -13 299 1 336 260 0 58 chr3 66057072 66057176 -161467402 - MIR SINE MIR -147 115 18 201 159 0 0 chr3 66057803 66057847 -161466731 + GA-rich Low_complexity Low_complexity 1 44 0 1803 157 6 6 chr3 66057907 66058219 -161466359 + AluSx SINE Alu 1 312 0 369 0 0 0 chr3 66058390 66058431 -161466147 + (TG)n Simple_repeat Simple_repeat 2 42 0 1213 181 14 14 chr3 66058437 66058652 -161465926 - AluJo SINE Alu -38 274 60 835 254 72 8 chr3 66060491 66060727 -161463851 + MIR SINE MIR 8 258 -4 307 225 155 56 chr3 66060707 66060849 -161463729 - MIR SINE MIR -43 219 64 * 242 250 117 62 chr3 66063158 66063286 -161461292 - MIR SINE MIR -115 147 13 711 220 13 25 chr3 66063982 66064141 -161460437 + MLT1E LTR MaLR 393 549 -44 437 184 184 0 chr3 66064163 66064261 -161460317 - MER45 DNA AcHobo -61 117 2 339 25 0 0 chr3 66064556 66064596 -161459982 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 180 97 0 0 chr3 66065626 66065657 -161458921 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2267 127 0 0 chr3 66066167 66066474 -161458104 + AluSx SINE Alu 1 307 -5 1750 153 3 24 chr3 66066502 66066796 -161457782 + AluJo SINE Alu 11 298 -14 230 54 0 27 chr3 66066796 66066816 -161457762 + (GA)n Simple_repeat Simple_repeat 1 21 -15 2081 93 30 0 chr3 66066816 66067085 -161457493 + AluSg SINE Alu 21 297 -13 230 54 0 27 chr3 66067085 66067101 -161457477 + (GA)n Simple_repeat Simple_repeat 21 36 0 359 289 7 66 chr3 66067298 66067403 -161457175 + MIR SINE MIR 110 205 -57 2277 96 17 0 chr3 66067403 66067705 -161456873 + AluSx SINE Alu 1 307 -5 359 289 7 66 chr3 66067705 66067751 -161456827 + MIR SINE MIR 205 252 -10 2259 119 0 3 chr3 66068206 66068517 -161456061 + AluSx SINE Alu 1 310 -2 1317 167 37 0 chr3 66068592 66068807 -161455771 - AluJb SINE Alu -14 298 76 2188 73 76 3 chr3 66069872 66070161 -161454417 + AluY SINE Alu 1 310 -1 332 257 0 59 chr3 66070503 66070604 -161453974 + MER117 DNA MER1_type 68 162 -35 2245 120 3 16 chr3 66071228 66071544 -161453034 + AluSq SINE Alu 1 312 -1 474 268 63 7 chr3 66072147 66072289 -161452289 - MIR SINE MIR -32 230 81 306 217 29 14 chr3 66072373 66072442 -161452136 - MIR SINE MIR -81 181 112 1685 159 48 38 chr3 66072690 66072855 -161451723 - AluJb SINE Alu -20 292 121 236 53 26 0 chr3 66072855 66072893 -161451685 + (TG)n Simple_repeat Simple_repeat 1 39 0 1685 159 48 38 chr3 66072893 66073016 -161451562 - AluJb SINE Alu -191 121 1 2059 119 0 68 chr3 66073285 66073595 -161450983 + AluSq SINE Alu 1 289 -24 27 29 0 0 chr3 66073836 66073870 -161450708 + AT_rich Low_complexity Low_complexity 1 34 0 195 282 109 27 chr3 66074205 66074315 -161450263 + L2 LINE L2 2145 2263 -1051 324 244 66 27 chr3 66074592 66074734 -161449844 + MIR SINE MIR 35 180 -61 2301 101 10 0 chr3 66075639 66075937 -161448641 - AluSx SINE Alu -11 301 1 25 0 0 0 chr3 66075942 66075967 -161448611 + AT_rich Low_complexity Low_complexity 1 25 0 1625 142 16 92 chr3 66075980 66076297 -161448281 - AluJb SINE Alu -15 297 5 207 0 0 0 chr3 66076913 66076936 -161447642 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 314 62 0 0 chr3 66076942 66076990 -161447588 - AluJo SINE Alu 0 302 255 1297 129 29 33 chr3 66076990 66077079 -161447499 - AluJo SINE Alu -103 209 121 2271 121 3 0 chr3 66077079 66077377 -161447201 + AluSx SINE Alu 1 299 -13 1297 129 29 33 chr3 66077377 66077497 -161447081 - AluJo SINE Alu -191 121 1 497 284 90 0 chr3 66077658 66077813 -161446765 - MIR SINE MIR -66 196 28 415 196 107 36 chr3 66078589 66078701 -161445877 + MER103 DNA DNA 2 121 -45 2214 93 10 3 chr3 66079643 66079933 -161444645 + AluSp SINE Alu 1 292 -21 203 228 13 38 chr3 66079997 66080076 -161444502 + (CCAA)n Simple_repeat Simple_repeat 2 78 0 1836 168 14 14 chr3 66080452 66080749 -161443829 + AluJo SINE Alu 1 297 -15 2073 113 39 0 chr3 66080847 66081129 -161443449 + AluSg SINE Alu 5 297 -13 2130 113 0 3 chr3 66081331 66081658 -161442920 + AluSg SINE Alu 1 326 0 939 216 68 7 chr3 66081667 66081959 -161442619 + Charlie4a DNA MER1_type 105 414 -94 369 58 58 0 chr3 66082138 66082190 -161442388 + THE1C LTR MaLR 1 55 -320 181 218 13 90 chr3 66082330 66082408 -161442170 + L2 LINE L2 2689 2760 -554 1048 179 36 58 chr3 66082413 66082452 -161442126 - MER58A DNA MER1_type -2197 223 185 2098 146 3 0 chr3 66082452 66082747 -161441831 - AluSx SINE Alu -16 296 1 1048 179 36 58 chr3 66082747 66082931 -161441647 - MER58A DNA MER1_type -2235 185 5 2511 94 50 16 chr3 66082967 66083330 -161441248 + THE1C LTR MaLR 1 375 0 650 203 49 0 chr3 66083333 66083476 -161441102 + MER3 DNA MER1_type 5 154 -55 2137 117 7 7 chr3 66083970 66084269 -161440309 + AluY SINE Alu 1 299 -12 509 185 0 0 chr3 66084374 66084455 -161440123 + AluJb SINE Alu 127 207 -105 264 313 181 12 chr3 66084608 66084774 -161439804 + MIR SINE MIR 35 228 -34 239 345 36 0 chr3 66085196 66085306 -161439272 + MARNA DNA Mariner 244 357 -229 2121 130 0 3 chr3 66085544 66085845 -161438733 + AluSq SINE Alu 1 300 -13 274 307 80 29 chr3 66086006 66086143 -161438435 + MER5B DNA MER1_type 8 151 -27 200 294 76 0 chr3 66086827 66086919 -161437659 - MIR SINE MIR -101 161 63 2420 95 0 0 chr3 66087403 66087708 -161436870 + AluSc SINE Alu 1 305 -4 425 131 30 184 chr3 66088507 66088675 -161435903 - MER53 DNA DNA -7 182 41 625 276 42 51 chr3 66088998 66089310 -161435268 + L1MC4 LINE L1 7229 7537 -505 356 241 13 0 chr3 66089316 66089395 -161435183 + MER5A DNA MER1_type 27 106 -83 553 224 61 112 chr3 66089427 66089739 -161434839 + L1MC4 LINE L1 7521 7816 -226 246 297 54 0 chr3 66089753 66089864 -161434714 + L1MC4 LINE L1 7791 7907 -135 312 245 35 112 chr3 66091002 66091145 -161433433 - MIR SINE MIR -115 147 16 601 292 22 17 chr3 66092246 66092424 -161432154 + MIR SINE MIR 34 212 -50 818 181 0 0 chr3 66092537 66092664 -161431914 + FLAM_C SINE Alu 5 131 -12 1999 154 0 3 chr3 66092764 66093057 -161431521 + AluJb SINE Alu 1 292 -20 2091 120 3 7 chr3 66093069 66093353 -161431225 + AluSx SINE Alu 1 283 -29 416 172 11 0 chr3 66094024 66094111 -161430467 + CT-rich Low_complexity Low_complexity 4 91 0 1904 184 0 3 chr3 66094151 66094544 -161430034 - AluJo SINE Alu 0 392 1 505 226 148 19 chr3 66094583 66094738 -161429840 + MER5A DNA MER1_type 9 183 -6 509 204 0 37 chr3 66094807 66094915 -161429663 + L2 LINE L2 3208 3311 -2 642 262 66 38 chr3 66095109 66095292 -161429286 - MIR SINE MIR -43 219 32 226 337 139 71 chr3 66095488 66095740 -161428838 - L2 LINE L2 -177 3095 2827 220 204 23 0 chr3 66096640 66096684 -161427894 - L2 LINE L2 -5 3267 3223 258 303 64 0 chr3 66096817 66096926 -161427652 + MIR SINE MIR 127 242 -20 1359 199 10 35 chr3 66097530 66097842 -161426736 - AluJb SINE Alu -8 304 1 882 190 82 119 chr3 66098231 66098374 -161426204 + L1MC5 LINE L1 7454 7601 -360 2172 94 11 0 chr3 66098374 66098673 -161425905 + AluSc SINE Alu 1 302 0 882 190 82 119 chr3 66098673 66098991 -161425587 + L1MC5 LINE L1 7601 7899 -62 2078 131 3 3 chr3 66098997 66099294 -161425284 - AluSx SINE Alu -15 297 1 1306 157 100 38 chr3 66099295 66099430 -161425148 - L1MB3 LINE L1 -274 5909 5784 1865 106 34 93 chr3 66099430 66099751 -161424827 - AluSx SINE Alu -10 302 1 1306 157 100 38 chr3 66099751 66099934 -161424644 - L1MB3 LINE L1 -399 5784 5571 1941 146 59 12 chr3 66100603 66100925 -161423653 + MER1B DNA MER1_type 1 337 0 775 183 0 22 chr3 66101543 66101680 -161422898 - FLAM_C SINE Alu -6 137 4 674 276 63 63 chr3 66101724 66102203 -161422375 - MLT1J LTR MaLR -4 507 29 379 222 167 43 chr3 66102441 66102603 -161421975 - L2 LINE L2 -188 3084 2903 460 175 9 44 chr3 66103434 66103548 -161421030 + MER103 DNA DNA 14 123 -43 1863 149 0 4 chr3 66103975 66104244 -161420334 - AluSx SINE Alu -44 268 1 743 196 133 0 chr3 66104245 66104403 -161420175 - LTR47A LTR ERVL -88 364 186 229 250 121 81 chr3 66104437 66104561 -161420017 - MIR SINE MIR -69 139 11 1208 125 0 113 chr3 66105653 66105909 -161418669 + AluSp SINE Alu 86 312 -1 4319 70 50 26 chr3 66106058 66106676 -161417902 - LTR10E LTR ERV1 0 633 1 842 231 109 42 chr3 66108388 66108774 -161415804 - MLT1J2 LTR MaLR 0 450 39 1539 220 54 15 chr3 66108839 66109248 -161415330 - MLT1C LTR MaLR -1 466 42 1879 59 0 0 chr3 66109275 66109494 -161415084 + AluSq SINE Alu 1 219 -94 231 62 0 0 chr3 66109494 66109526 -161415052 + Alu SINE Alu 188 219 -84 * 326 83 0 0 chr3 66109510 66109558 -161415020 + AluSg/x SINE Alu 172 219 -83 326 83 0 0 chr3 66109542 66109590 -161414988 + AluSp/q SINE Alu 172 219 -84 318 104 0 0 chr3 66109574 66109622 -161414956 + AluSp/q SINE Alu 172 219 -84 * 943 125 0 0 chr3 66109638 66109766 -161414812 + AluSg/x SINE Alu 172 299 -13 21 0 0 0 chr3 66110614 66110635 -161413943 + AT_rich Low_complexity Low_complexity 1 21 0 692 212 101 21 chr3 66110680 66110869 -161413709 - MER105 DNA DNA 0 204 1 1305 164 32 39 chr3 66110911 66111140 -161413438 + MER33 DNA MER1_type 1 206 -2379 1158 202 9 26 chr3 66111140 66111368 -161413210 - MER58A DNA MER1_type 0 224 1 1305 164 32 39 chr3 66111368 66111480 -161413098 + MER33 DNA MER1_type 206 317 -7 396 0 0 0 chr3 66111546 66111590 -161412988 + (TG)n Simple_repeat Simple_repeat 2 45 0 312 195 345 0 chr3 66111831 66111918 -161412660 + MIR3 SINE MIR 43 159 -49 193 232 71 36 chr3 66111916 66111972 -161412606 + MIR3 SINE MIR 11 68 -140 * 947 177 143 13 chr3 66111975 66112212 -161412366 + ORSL DNA AcHobo 1 268 -7 537 337 15 10 chr3 66112213 66112415 -161412163 + MIR SINE MIR 60 262 0 689 242 180 14 chr3 66113491 66113702 -161410876 - MIR SINE MIR -13 249 4 371 306 125 19 chr3 66113728 66113888 -161410690 + MER5A DNA MER1_type 2 178 -11 1895 173 3 6 chr3 66113896 66114209 -161410369 - AluJb SINE Alu 0 312 1 1579 102 14 5 chr3 66114699 66114915 -161409663 - AluSg/x SINE Alu -14 298 81 290 119 0 0 chr3 66114915 66114957 -161409621 - Alu SINE Alu -260 42 1 225 254 75 0 chr3 66115232 66115299 -161409279 + L1MC/D LINE L1 5853 5924 -1884 249 274 0 0 chr3 66116751 66116813 -161407765 - MIR SINE MIR -61 147 86 1467 152 0 9 chr3 66116970 66117187 -161407391 - AluJb SINE Alu -11 301 87 1230 277 68 4 chr3 66117551 66118038 -161406540 - MER113 DNA MER1_type? 0 521 4 2123 119 7 0 chr3 66118211 66118513 -161406065 - AluSx SINE Alu -6 306 3 2465 63 0 10 chr3 66118521 66118823 -161405755 - AluY SINE Alu -12 299 1 203 53 0 53 chr3 66119161 66119199 -161405379 + (TTTTA)n Simple_repeat Simple_repeat 4 39 0 979 153 13 13 chr3 66119199 66119356 -161405222 - FAM SINE Alu -18 157 1 2133 104 0 57 chr3 66119381 66119698 -161404880 + AluSx SINE Alu 1 299 -13 189 309 15 0 chr3 66119922 66119990 -161404588 - MIR SINE MIR -59 149 81 2619 48 0 29 chr3 66120158 66120473 -161404105 + AluY SINE Alu 1 306 -5 1304 133 5 19 chr3 66120878 66121088 -161403490 + AluSg/x SINE Alu 106 312 0 207 315 0 22 chr3 66121091 66121183 -161403395 + GA-rich Low_complexity Low_complexity 4 93 0 464 333 132 0 chr3 66121253 66121442 -161403136 + MIR SINE MIR 15 228 -34 287 189 0 0 chr3 66121535 66121588 -161402990 + L2 LINE L2 3261 3313 0 1527 172 19 58 chr3 66121606 66121732 -161402846 + AluJo SINE Alu 1 131 -181 2514 61 0 0 chr3 66121732 66122025 -161402553 - AluY SINE Alu -18 293 1 1527 172 19 58 chr3 66122025 66122223 -161402355 + AluJo SINE Alu 130 312 0 2035 142 3 10 chr3 66122667 66122976 -161401602 + AluJo SINE Alu 1 307 -5 21 36 0 0 chr3 66123124 66123152 -161401426 + AT_rich Low_complexity Low_complexity 1 28 0 195 184 0 0 chr3 66123152 66123190 -161401388 + (TA)n Simple_repeat Simple_repeat 2 39 0 687 139 9 9 chr3 66124724 66124832 -161399746 + AluJo SINE Alu 28 135 -177 1710 168 48 3 chr3 66124851 66125142 -161399436 + AluJo SINE Alu 1 304 -8 2930 127 117 26 chr3 66125495 66125701 -161398877 + LTR49 LTR ERV1 1 187 -408 2194 118 0 3 chr3 66125701 66125997 -161398581 + AluSq SINE Alu 2 296 -17 2930 127 117 26 chr3 66125997 66126335 -161398243 + LTR49 LTR ERV1 187 595 0 399 276 196 25 chr3 66126350 66126513 -161398065 + MIR SINE MIR 10 200 -62 2138 93 7 33 chr3 66126925 66127226 -161397352 - AluSc SINE Alu -16 293 1 203 53 0 53 chr3 66127565 66127603 -161396975 + (TTTTA)n Simple_repeat Simple_repeat 4 39 0 979 153 13 13 chr3 66127603 66127760 -161396818 - FAM SINE Alu -18 157 1 2172 98 0 57 chr3 66127785 66128102 -161396476 + AluSx SINE Alu 1 299 -13 189 309 15 0 chr3 66128326 66128394 -161396184 - MIR SINE MIR -59 149 81 2642 41 0 29 chr3 66128562 66128877 -161395701 + AluY SINE Alu 1 306 -5 468 304 49 21 chr3 66129164 66129407 -161395171 + L1ME LINE L1 5575 5824 -297 501 328 52 17 chr3 66129407 66129639 -161394939 - MIR SINE MIR -21 241 2 2210 138 0 0 chr3 66129740 66130052 -161394526 - AluJb SINE Alu 0 312 1 2200 143 7 61 chr3 66130386 66130798 -161393780 + MLT1B LTR MaLR 1 390 0 285 285 140 65 chr3 66131500 66131686 -161392892 - MIR SINE MIR -13 249 50 2229 90 24 3 chr3 66131687 66131975 -161392603 + AluSx SINE Alu 1 294 -18 264 319 107 56 chr3 66134637 66135047 -161389531 + MLT1L LTR MaLR 171 601 -14 1705 147 63 25 chr3 66135619 66135905 -161388673 - AluJb SINE Alu -15 297 1 264 257 0 14 chr3 66135983 66136057 -161388521 + L2 LINE L2 2994 3066 -206 588 111 0 11 chr3 66136553 66136643 -161387935 - AluJ/FRAM SINE Alu -3 309 221 690 267 75 28 chr3 66137533 66137778 -161386800 + MIR SINE MIR 14 262 0 279 221 378 39 chr3 66138067 66138194 -161386384 - MER5A DNA MER1_type -8 181 12 571 258 26 32 chr3 66138212 66138402 -161386176 - MER3 DNA MER1_type 0 209 21 914 157 0 6 chr3 66138733 66138892 -161385686 + L1MB3 LINE L1 6018 6175 -8 228 135 0 0 chr3 66139245 66139282 -161385296 + (TG)n Simple_repeat Simple_repeat 1 37 0 685 130 163 16 chr3 66141053 66141176 -161383402 + AluSq/x SINE Alu 2 142 -170 828 260 34 7 chr3 66141177 66141469 -161383109 + AluSx SINE Alu 1 300 -12 1527 207 157 33 chr3 66141916 66142400 -161382178 + MLT1K LTR MaLR 39 582 -6 583 226 13 57 chr3 66142401 66142560 -161382018 + MIR SINE MIR 111 262 0 409 249 60 21 chr3 66143442 66143687 -161380891 - L1M LINE L1 -753 5393 5166 247 238 36 12 chr3 66144011 66144095 -161380483 - L1MC4 LINE L1 -93 7949 7864 644 252 68 32 chr3 66147069 66147319 -161377259 + MIR SINE MIR 4 262 0 245 267 152 95 chr3 66147744 66147954 -161376624 + MIR SINE MIR 17 238 -24 276 188 47 35 chr3 66148204 66148289 -161376289 - L1MC5 LINE L1 -33 7928 7843 657 280 93 27 chr3 66149443 66149668 -161374910 + MIR SINE MIR 23 262 0 2687 51 0 6 chr3 66150538 66150851 -161373727 + AluY SINE Alu 1 311 0 2320 106 0 10 chr3 66150861 66151163 -161373415 + AluSx SINE Alu 1 299 -13 207 0 0 0 chr3 66152354 66152377 -161372201 + (A)n Simple_repeat Simple_repeat 1 23 0 310 253 56 45 chr3 66152514 66152692 -161371886 - Charlie8 DNA MER1_type -2165 252 73 303 282 77 34 chr3 66153468 66153585 -161370993 - L1ME4a LINE L1 -33 6088 5967 2224 130 0 0 chr3 66153784 66154083 -161370495 - AluJb SINE Alu -13 299 1 270 258 54 11 chr3 66154700 66154745 -161369833 + L1M4 LINE L1 4116 4158 -1988 1955 165 0 10 chr3 66154745 66155048 -161369530 + AluSx SINE Alu 1 300 -12 270 258 54 11 chr3 66155048 66155095 -161369483 + L1M4 LINE L1 4158 4212 -1934 1588 188 23 32 chr3 66155698 66156006 -161368572 + AluJb SINE Alu 8 312 0 1029 180 27 40 chr3 66156149 66156371 -161368207 - MER20 DNA MER1_type 0 219 1 489 78 13 0 chr3 66156502 66156579 -161367999 - L1PB3 LINE L1 0 6154 6077 327 240 170 0 chr3 66157039 66157139 -161367439 - L2 LINE L2 -6 3307 3191 193 246 43 58 chr3 66159161 66159230 -161365348 + L2 LINE L2 3191 3258 -14 26 0 0 0 chr3 66159661 66159687 -161364891 + AT_rich Low_complexity Low_complexity 1 26 0 293 284 59 10 chr3 66160258 66160360 -161364218 + MIR SINE MIR 124 230 -32 1464 237 47 43 chr3 66161089 66161595 -161362983 + Charlie4a DNA MER1_type 1 508 0 2096 136 0 7 chr3 66162244 66162545 -161362033 - AluSx SINE Alu -13 299 1 876 165 0 0 chr3 66162561 66162694 -161361884 + FLAM_C SINE Alu 1 133 0 25 0 0 0 chr3 66162698 66162723 -161361855 + AT_rich Low_complexity Low_complexity 1 25 0 240 315 22 0 chr3 66162895 66162987 -161361591 - MER103 DNA DNA -44 122 29 1501 206 36 27 chr3 66164145 66164510 -161360068 + MLT1A2 LTR MaLR 5 372 -2 352 318 97 26 chr3 66164733 66164928 -161359650 + L1MC4a LINE L1 5312 5520 -646 2312 111 3 0 chr3 66165387 66165693 -161358885 - AluSq SINE Alu -6 307 1 1953 132 4 4 chr3 66168968 66169240 -161355338 + AluSx SINE Alu 26 297 -15 336 311 167 0 chr3 66169434 66169566 -161355012 + MIR SINE MIR 16 169 -93 250 275 80 56 chr3 66171439 66171690 -161352888 + L1ME4a LINE L1 5732 5988 -133 1068 321 37 21 chr3 66171877 66172412 -161352166 + L1MC/D LINE L1 5254 5797 -2011 791 197 0 0 chr3 66172484 66172621 -161351957 + FLAM_C SINE Alu 2 138 -5 290 345 110 21 chr3 66175155 66175483 -161349095 + L1MC4a LINE L1 5555 5911 -1897 1839 167 0 17 chr3 66175613 66175907 -161348671 - AluJo SINE Alu -22 290 2 2272 102 14 0 chr3 66175969 66176263 -161348315 + AluSx SINE Alu 1 298 -14 218 296 56 28 chr3 66178889 66178960 -161345618 - L2 LINE L2 -45 3227 3155 201 267 67 17 chr3 66179117 66179177 -161345401 - L2 LINE L2 -225 3047 2985 1818 101 120 11 chr3 66179855 66180131 -161344447 + AluSg SINE Alu 1 306 -4 469 264 12 155 chr3 66180428 66180686 -161343892 - MIR SINE MIR -26 236 16 268 119 24 0 chr3 66181213 66181255 -161343323 - MER5B DNA MER1_type -135 43 1 2035 93 7 20 chr3 66181278 66181578 -161343000 + AluSg SINE Alu 1 296 -14 2431 51 0 3 chr3 66182730 66183024 -161341554 + AluY SINE Alu 1 293 -18 301 333 195 6 chr3 66183910 66184084 -161340494 + MIR SINE MIR 21 227 -35 1675 134 16 67 chr3 66184466 66184592 -161339986 + AluJb SINE Alu 1 132 -180 351 0 0 0 chr3 66184592 66184631 -161339947 + (CA)n Simple_repeat Simple_repeat 2 40 0 1675 134 16 67 chr3 66184631 66184818 -161339760 + AluJb SINE Alu 132 298 -14 325 276 148 46 chr3 66185274 66185491 -161339087 - MIR SINE MIR -15 247 9 474 211 0 0 chr3 66186194 66186289 -161338289 + Charlie5 DNA MER1_type 7 101 -2511 303 277 46 54 chr3 66186333 66186371 -161338207 - L1ME4a LINE L1 -150 5971 5934 2293 84 0 0 chr3 66186371 66186669 -161337909 + AluSx SINE Alu 1 298 -14 303 277 46 54 chr3 66186669 66186760 -161337818 - L1ME4a LINE L1 -187 5934 5843 1090 166 0 0 chr3 66186772 66186959 -161337619 - AluJo SINE Alu -9 303 117 1724 103 24 69 chr3 66186959 66187116 -161337462 + MER33 DNA MER1_type 1 139 -2446 1513 170 11 14 chr3 66187116 66187393 -161337185 - AluJo SINE Alu -31 281 6 1724 103 24 69 chr3 66187393 66187571 -161337007 + MER33 DNA MER1_type 139 324 0 547 149 228 0 chr3 66187571 66187683 -161336895 + MER105 DNA DNA 46 183 -21 1731 147 24 7 chr3 66187818 66188111 -161336467 + AluSx SINE Alu 1 298 -14 218 263 0 18 chr3 66188139 66188196 -161336382 + MIR SINE MIR 103 158 -104 2260 175 124 23 chr3 66188227 66188758 -161335820 + L1ME1 LINE L1 5564 6148 -18 491 119 0 0 chr3 66188812 66188879 -161335699 + AluJ SINE Alu 60 126 -186 2072 89 0 7 chr3 66188885 66189166 -161335412 + AluSx SINE Alu 1 279 -33 903 198 6 16 chr3 66189199 66189381 -161335197 + AluJ SINE Alu 132 311 -1 190 239 179 0 chr3 66189383 66189450 -161335128 + MIR SINE MIR 183 261 -1 326 276 19 19 chr3 66189930 66190035 -161334543 + L2 LINE L2 3168 3272 0 29 0 0 0 chr3 66190656 66190685 -161333893 + AT_rich Low_complexity Low_complexity 1 29 0 216 329 25 0 chr3 66190937 66191016 -161333562 + L2 LINE L2 3185 3265 -7 2061 101 0 14 chr3 66191176 66191487 -161333091 - AluSq SINE Alu 0 307 1 599 259 49 21 chr3 66191820 66191963 -161332615 - MIR SINE MIR -30 232 86 266 210 0 65 chr3 66192239 66192301 -161332277 - L2 LINE L2 0 3272 3215 1920 145 26 0 chr3 66193364 66193668 -161330910 - AluSx SINE Alu 0 312 1 2158 99 7 0 chr3 66194025 66194327 -161330251 + AluSq SINE Alu 1 304 -9 218 345 24 12 chr3 66194363 66194447 -161330131 + L2 LINE L2 3229 3313 0 1686 207 157 33 chr3 66194773 66195257 -161329321 + MLT1K LTR MaLR 39 582 -6 582 226 13 57 chr3 66195258 66195417 -161329161 + MIR SINE MIR 111 262 0 4400 68 50 23 chr3 66196007 66196623 -161327955 + LTR10E LTR ERV1 1 633 0 417 144 0 56 chr3 66196777 66196867 -161327711 - AluSp/q SINE Alu -1 312 228 340 319 84 11 chr3 66198751 66198942 -161325636 + L2 LINE L2 2833 3037 -276 275 233 0 17 chr3 66198941 66199001 -161325577 + L2 LINE L2 3241 3299 -14 * 1634 188 3 10 chr3 66199047 66199355 -161325223 + AluJo SINE Alu 1 306 -6 427 239 112 15 chr3 66199375 66199509 -161325069 + MIR SINE MIR 46 192 -70 2275 87 0 3 chr3 66199673 66199972 -161324606 - AluSx SINE Alu -14 298 1 231 256 112 80 chr3 66202302 66202427 -161322151 + MIR SINE MIR 11 139 -69 795 196 133 0 chr3 66202461 66202619 -161321959 + LTR47A LTR ERVL 186 364 -88 1732 149 0 4 chr3 66202620 66202889 -161321689 + AluSx SINE Alu 1 268 -44 304 275 62 56 chr3 66202981 66203159 -161321419 - L1ME4a LINE L1 -97 6024 5846 1004 158 0 0 chr3 66203199 66203357 -161321221 - AluJb SINE Alu -18 294 137 322 267 156 11 chr3 66203361 66203451 -161321127 - L1ME4a LINE L1 -295 5826 5724 511 265 68 76 chr3 66203886 66204135 -161320443 - MIR SINE MIR 0 262 16 27 29 0 0 chr3 66204168 66204202 -161320376 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr3 66204247 66204275 -161320303 + AT_rich Low_complexity Low_complexity 1 28 0 597 263 13 19 chr3 66204304 66204460 -161320118 - MIR SINE MIR -80 182 28 1093 58 7 0 chr3 66204489 66204626 -161319952 + AluSq/x SINE Alu 1 138 -174 209 250 146 10 chr3 66205272 66205368 -161319210 - MIR SINE MIR -65 143 35 310 316 26 0 chr3 66205535 66205652 -161318926 + GA-rich Low_complexity Low_complexity 6 125 0 310 311 147 28 chr3 66205652 66205829 -161318749 + HAL1 LINE L1 1105 1302 -1205 270 213 354 0 chr3 66205867 66205994 -161318584 + MIR SINE MIR 78 249 -13 492 320 23 17 chr3 66206007 66206182 -161318396 - MIR SINE MIR -1 261 86 21 0 0 0 chr3 66207290 66207311 -161317267 + AT_rich Low_complexity Low_complexity 1 21 0 2253 104 0 0 chr3 66207646 66207953 -161316625 + AluSx SINE Alu 1 307 -5 235 189 19 0 chr3 66208449 66208502 -161316076 + MER53 DNA DNA 1 54 -135 304 197 15 0 chr3 66208641 66208707 -161315871 - L1MA3 LINE L1 0 6305 6239 425 274 167 14 chr3 66209009 66209224 -161315354 - MIR SINE MIR -2 260 13 482 211 9 9 chr3 66209755 66209864 -161314714 - MER103 DNA DNA -44 122 14 452 253 201 66 chr3 66210566 66211055 -161313523 + L2 LINE L2 2725 3306 -7 1654 154 7 23 chr3 66211091 66211396 -161313182 - AluJb SINE Alu -2 310 11 216 253 154 77 chr3 66211898 66212080 -161312498 + L2 LINE L2 3111 3306 -7 1932 151 0 22 chr3 66212117 66212434 -161312144 - AluJb SINE Alu -2 310 1 1072 162 39 0 chr3 66212626 66212805 -161311773 - MER20 DNA MER1_type -3 216 31 490 248 64 38 chr3 66212855 66213012 -161311566 + MIR SINE MIR 67 227 -35 274 200 55 0 chr3 66213070 66213125 -161311453 - MIR SINE MIR -109 153 96 1544 160 36 52 chr3 66213169 66213475 -161311103 + AluJo SINE Alu 1 301 -11 913 143 24 6 chr3 66213596 66213764 -161310814 - MER96B DNA MER1_type? -6 411 241 568 237 22 0 chr3 66214414 66214553 -161310025 - L1MC4 LINE L1 0 8042 7901 1563 97 0 0 chr3 66214555 66214761 -161309817 - AluSg/x SINE Alu -21 291 86 2141 127 0 0 chr3 66214798 66215098 -161309480 - AluSx SINE Alu -12 300 1 205 205 0 0 chr3 66215113 66215152 -161309426 - MIR SINE MIR 0 262 224 15120 121 39 15 chr3 66215237 66216372 -161308206 + Tigger1 DNA MER2_type 1 1107 -1311 2124 118 0 16 chr3 66216372 66216685 -161307893 - AluSx SINE Alu -4 308 1 15120 121 39 15 chr3 66216685 66217809 -161306769 + Tigger1 DNA MER2_type 1107 2322 -96 1597 159 58 0 chr3 66217809 66218086 -161306492 - AluJo SINE Alu -19 293 1 15120 121 39 15 chr3 66218086 66218186 -161306392 + Tigger1 DNA MER2_type 2322 2418 0 552 232 60 38 chr3 66218233 66218418 -161306160 - MIR SINE MIR -55 207 19 2358 159 9 48 chr3 66218815 66219254 -161305324 + LTR3 LTR ERVK 1 422 -10 2189 105 0 0 chr3 66219396 66219691 -161304887 + AluSq SINE Alu 1 295 -18 832 169 0 0 chr3 66219758 66219888 -161304690 - FLAM_C SINE Alu -3 130 1 235 198 352 0 chr3 66219914 66220005 -161304573 - L2 LINE L2 -1 3271 3149 427 298 0 9 chr3 66220194 66220308 -161304270 + MER81 DNA DNA 2 114 0 381 293 44 20 chr3 66220393 66220560 -161304018 - MIR SINE MIR -62 146 17 1878 152 0 10 chr3 66220748 66221057 -161303521 - AluSx SINE Alu -6 306 1 382 191 109 9 chr3 66221248 66221358 -161303220 + MIR SINE MIR 67 187 -75 185 228 105 0 chr3 66222165 66222222 -161302356 - L3 LINE CR1 -288 1289 1227 361 244 83 100 chr3 66222294 66222422 -161302156 - MIR SINE MIR -29 233 107 2046 126 3 0 chr3 66222422 66222723 -161301855 - AluSq SINE Alu -11 302 1 361 244 83 100 chr3 66222723 66222774 -161301804 - MIR SINE MIR -155 107 57 386 314 77 43 chr3 66223025 66223305 -161301273 - L1MDa LINE L1 -3870 2259 1974 1913 118 52 3 chr3 66223321 66223609 -161300969 - AluSx SINE Alu -10 302 1 700 134 8 24 chr3 66223931 66224058 -161300520 + FRAM SINE Alu 1 124 -52 346 298 39 77 chr3 66224166 66224347 -161300231 - HAL1 LINE L1 -944 1563 1390 1636 149 25 11 chr3 66224382 66224658 -161299920 + AluJb SINE Alu 1 280 -32 423 0 0 0 chr3 66224660 66224707 -161299871 + (TAAA)n Simple_repeat Simple_repeat 2 48 0 6982 53 4 15 chr3 66224728 66225636 -161298942 + L1PB1 LINE L1 5254 6151 0 709 273 46 21 chr3 66225644 66225926 -161298652 - L1MDa LINE L1 -4880 1239 951 319 292 117 23 chr3 66225971 66226142 -161298436 - L1MDa LINE L1 -5142 977 791 30 59 0 0 chr3 66226144 66226195 -161298383 + AT_rich Low_complexity Low_complexity 1 51 0 201 133 0 0 chr3 66226318 66226348 -161298230 + (TC)n Simple_repeat Simple_repeat 1 30 0 1125 209 55 11 chr3 66226411 66226684 -161297894 - L1ME3A LINE L1 -8 6162 5878 2134 111 0 3 chr3 66227073 66227371 -161297207 - AluSc SINE Alu -12 297 1 233 311 251 16 chr3 66227406 66227589 -161296989 - L3 LINE CR1 -768 809 584 627 170 0 0 chr3 66227589 66227695 -161296883 + FLAM_C SINE Alu 2 107 -36 488 122 12 0 chr3 66227696 66227778 -161296800 + (GGAA)n Simple_repeat Simple_repeat 2 84 0 327 374 134 31 chr3 66227808 66228324 -161296254 - L3 LINE CR1 -1008 569 1 2022 148 50 66 chr3 66228616 66228685 -161295893 - MSTB1 LTR MaLR 0 432 363 2017 118 0 0 chr3 66228685 66228965 -161295613 + AluSx SINE Alu 1 280 -32 1016 71 32 0 chr3 66228967 66229121 -161295457 + (GAAA)n Simple_repeat Simple_repeat 2 160 0 2022 148 50 66 chr3 66229121 66229487 -161295091 - MSTB1 LTR MaLR -70 362 1 253 286 10 61 chr3 66230041 66230143 -161294435 + MIR SINE MIR 2 95 -113 1169 124 30 25 chr3 66230143 66230344 -161294234 + MSTB1 LTR MaLR 1 202 -230 * 1725 156 35 100 chr3 66230339 66230710 -161293868 + MSTB LTR MaLR 76 422 -4 1308 106 10 25 chr3 66230712 66230910 -161293668 + AluSg/x SINE Alu 90 284 -26 454 241 99 21 chr3 66230978 66231119 -161293459 + MIR SINE MIR 106 257 -5 202 355 171 14 chr3 66231118 66231329 -161293249 - L2 LINE L2 -12 3260 3017 * 349 222 232 0 chr3 66231579 66231678 -161292900 + L2 LINE L2 3151 3272 0 397 250 122 48 chr3 66231689 66231877 -161292701 + MIR SINE MIR 53 254 -8 212 214 48 0 chr3 66233206 66233248 -161291330 + L2 LINE L2 3229 3272 0 269 238 16 0 chr3 66233303 66233366 -161291212 - L2 LINE L2 -224 3048 2985 226 310 88 9 chr3 66233653 66233766 -161290812 + MIR SINE MIR 60 181 -81 183 233 47 0 chr3 66233883 66233926 -161290652 + L2 LINE L2 3210 3254 -18 298 0 48 0 chr3 66234023 66234065 -161290513 + (CGGGGG)n Simple_repeat Simple_repeat 3 46 0 23 33 0 0 chr3 66234270 66234300 -161290278 + GC_rich Low_complexity Low_complexity 1 30 0 471 322 22 0 chr3 66235467 66235650 -161288928 - MIR SINE MIR 0 262 76 206 350 165 0 chr3 66235848 66235945 -161288633 + MIR SINE MIR 150 262 0 22 0 0 0 chr3 66236077 66236099 -161288479 + AT_rich Low_complexity Low_complexity 1 22 0 1737 156 0 16 chr3 66236430 66236738 -161287840 + AluJb SINE Alu 6 308 -4 801 168 0 30 chr3 66236807 66236938 -161287640 - FLAM_A SINE Alu -6 127 1 969 161 0 12 chr3 66237131 66237292 -161287286 - AluJo/FRAM SINE Alu -20 292 134 2338 67 3 0 chr3 66237292 66237590 -161286988 - AluSx SINE Alu -13 299 1 746 167 104 3 chr3 66237601 66237760 -161286818 + MER20 DNA MER1_type 41 215 -4 366 246 162 52 chr3 66238374 66238565 -161286013 - MIR SINE MIR -19 243 32 216 297 57 48 chr3 66238609 66238818 -161285760 - L2 LINE L2 -252 3020 2810 240 241 19 0 chr3 66238887 66238941 -161285637 + MIR SINE MIR 79 133 -129 257 278 93 65 chr3 66239152 66239260 -161285318 - L2 LINE L2 -18 3254 3144 4975 60 0 3 chr3 66239293 66239907 -161284671 - L1PA6 LINE L1 -11 6143 5532 1799 133 24 10 chr3 66240224 66240517 -161284061 - AluSx SINE Alu -15 297 1 1555 149 62 0 chr3 66241047 66241323 -161283255 + AluJo SINE Alu 1 293 -19 1519 129 129 4 chr3 66242647 66242911 -161281667 - AluJo SINE Alu -15 297 1 1111 174 41 0 chr3 66242936 66243132 -161281446 + MER3 DNA MER1_type 6 209 0 1811 122 18 0 chr3 66243172 66243481 -161281097 - AluSx SINE Alu 0 314 1 1323 287 52 62 chr3 66243532 66244023 -161280555 - L1MC4a LINE L1 -743 5403 5639 2367 57 3 3 chr3 66244023 66244319 -161280259 + AluSp SINE Alu 1 296 -17 1323 287 52 62 chr3 66244319 66244762 -161279816 - L1MC4a LINE L1 -506 5640 5194 21 0 0 0 chr3 66244900 66244921 -161279657 + AT_rich Low_complexity Low_complexity 1 21 0 743 184 7 14 chr3 66246353 66246494 -161278084 + MER3 DNA MER1_type 48 187 -22 2036 116 13 3 chr3 66246645 66246947 -161277631 + AluSx SINE Alu 1 305 -7 208 328 15 0 chr3 66247436 66247503 -161277075 - L2 LINE L2 0 3313 3246 1687 139 73 0 chr3 66247834 66248121 -161276457 - AluJb SINE Alu -4 308 1 455 198 44 126 chr3 66248133 66248315 -161276263 + MER113 DNA MER1_type? 351 517 -4 194 316 219 26 chr3 66249241 66249355 -161275223 - L2 LINE L2 -1 3271 3136 469 193 42 49 chr3 66249705 66249879 -161274699 + MIR SINE MIR 3 179 -67 974 236 37 0 chr3 66249885 66250101 -161274477 + MER58A DNA MER1_type 1 224 0 34 0 0 0 chr3 66250384 66250418 -161274160 + AT_rich Low_complexity Low_complexity 1 34 0 233 191 0 0 chr3 66250424 66250471 -161274107 - LTR66 LTR ERVL -170 440 394 189 0 0 0 chr3 66250471 66250492 -161274086 + (CA)n Simple_repeat Simple_repeat 2 22 0 720 186 0 0 chr3 66250507 66250625 -161273953 - FLAM_C SINE Alu -15 118 1 839 191 25 0 chr3 66251070 66251227 -161273351 - FRAM SINE Alu -12 164 4 2168 109 20 0 chr3 66251246 66251549 -161273029 - AluSq SINE Alu -1 312 4 888 261 55 66 chr3 66251555 66251684 -161272894 - L1MC4 LINE L1 0 8042 7913 357 24 0 0 chr3 66251684 66251726 -161272852 + (CA)n Simple_repeat Simple_repeat 2 43 0 888 261 55 66 chr3 66251726 66252033 -161272545 - L1MC4 LINE L1 -129 7913 7611 1752 138 7 17 chr3 66252505 66252814 -161271764 - AluSx SINE Alu 0 306 1 2064 123 7 10 chr3 66252960 66253270 -161271308 - AluSx SINE Alu -3 309 1 696 252 143 59 chr3 66253435 66253634 -161270944 + MER113 DNA MER1_type? 5 186 -335 2201 86 3 0 chr3 66253634 66253924 -161270654 + AluSp SINE Alu 2 292 -21 696 252 143 59 chr3 66253924 66254184 -161270394 + MER113 DNA MER1_type? 186 503 -18 2346 172 20 14 chr3 66254932 66255005 -161269573 - L1MB7 LINE L1 -1 6182 6111 2113 107 0 7 chr3 66255005 66255303 -161269275 + AluSx SINE Alu 1 296 -16 2346 172 20 14 chr3 66255303 66255746 -161268832 - L1MB7 LINE L1 -72 6111 5704 342 234 0 51 chr3 66256819 66256956 -161267622 + L1M4 LINE L1 4157 4286 -1860 572 170 11 0 chr3 66256956 66257050 -161267528 + AluJ/FLAM SINE Alu 1 95 -217 1025 167 128 0 chr3 66257051 66257255 -161267323 - AluJb SINE Alu -82 230 1 3392 139 83 18 chr3 66257295 66257956 -161266622 + L1MB4 LINE L1 5477 6180 0 2208 92 0 35 chr3 66258395 66258535 -161266043 + AluSq SINE Alu 1 144 -169 2148 123 0 0 chr3 66258535 66258845 -161265733 + AluSg SINE Alu 1 310 0 2208 92 0 35 chr3 66258845 66259020 -161265558 + AluSq SINE Alu 144 305 -8 36 0 0 0 chr3 66259429 66259465 -161265113 + AT_rich Low_complexity Low_complexity 1 36 0 726 289 23 38 chr3 66259584 66259979 -161264599 - L1ME4a LINE L1 -188 5933 5545 528 16 0 0 chr3 66259992 66260053 -161264525 + (CA)n Simple_repeat Simple_repeat 2 62 0 1197 189 39 9 chr3 66260074 66260307 -161264271 + AluJb SINE Alu 52 291 -21 26 30 0 0 chr3 66260348 66260381 -161264197 + AT_rich Low_complexity Low_complexity 1 33 0 3286 65 34 2 chr3 66260381 66260825 -161263753 - L1MA1 LINE L1 -7 6295 5838 455 277 63 52 chr3 66260830 66261088 -161263490 - L1ME4a LINE L1 -703 5418 5157 306 295 39 31 chr3 66261096 66261225 -161263353 - MIR SINE MIR -2 260 131 1722 204 98 14 chr3 66261236 66261594 -161262984 - MSTD LTR MaLR 0 396 9 1554 138 52 38 chr3 66261792 66262082 -161262496 + AluSx SINE Alu 19 312 0 1847 170 3 0 chr3 66262994 66263300 -161261278 + AluJb SINE Alu 5 311 -1 1742 146 24 14 chr3 66263404 66263699 -161260879 + AluJb SINE Alu 1 298 -14 263 290 11 21 chr3 66263893 66263986 -161260592 + CT-rich Low_complexity Low_complexity 5 96 0 388 279 39 54 chr3 66265530 66265659 -161258919 + L2 LINE L2 3180 3306 -7 447 208 0 0 chr3 66265660 66265780 -161258798 + (TGGA)n Simple_repeat Simple_repeat 1 120 0 921 232 19 33 chr3 66265802 66266013 -161258565 + MER58A DNA MER1_type 1 208 -16 1150 149 58 34 chr3 66266017 66266225 -161258353 + AluJb SINE Alu 84 296 -16 25 0 0 0 chr3 66266873 66266898 -161257680 + AT_rich Low_complexity Low_complexity 1 25 0 332 203 203 49 chr3 66266971 66267094 -161257484 - MIR SINE MIR -2 260 119 224 176 20 20 chr3 66267286 66267317 -161257261 + CT-rich Low_complexity Low_complexity 2 35 -17 1491 129 33 117 chr3 66267317 66267651 -161256927 - AluSx SINE Alu -6 306 1 224 176 20 20 chr3 66267651 66267670 -161256908 + CT-rich Low_complexity Low_complexity 34 52 0 341 216 134 0 chr3 66267675 66267772 -161256806 - L1ME3 LINE L1 -4 6158 6049 309 257 200 0 chr3 66267772 66267877 -161256701 - MIR SINE MIR -114 148 23 1217 175 19 30 chr3 66268362 66268630 -161255948 - L1MD3 LINE L1 0 7995 7731 725 156 74 0 chr3 66268828 66268950 -161255628 + FLAM_C SINE Alu 2 132 -11 3900 59 2 0 chr3 66268965 66269453 -161255125 + L1PA8 LINE L1 5683 6171 -1 234 286 143 11 chr3 66269906 66269997 -161254581 - MER5A DNA MER1_type -83 106 4 386 235 140 29 chr3 66270482 66270618 -161253960 - L2 LINE L2 -3 3269 3119 236 306 153 0 chr3 66270710 66270834 -161253744 - L2 LINE L2 -321 2951 2809 2214 95 3 0 chr3 66270880 66271176 -161253402 - AluSg SINE Alu -13 297 1 38866 81 16 6 chr3 66271193 66277276 -161247302 - L1PA6 LINE L1 0 6154 11 534 153 0 31 chr3 66277283 66277381 -161247197 - Charlie1 DNA MER1_type -30 2731 2637 887 132 0 21 chr3 66277383 66277527 -161247051 + FLAM_C SINE Alu 1 141 -2 615 214 87 6 chr3 66277533 66277706 -161246872 - Charlie1 DNA MER1_type -2519 242 56 757 297 177 9 chr3 66277728 66277999 -161246579 - L2 LINE L2 -494 2820 2596 1807 148 10 22 chr3 66277999 66278310 -161246268 + AluJb SINE Alu 1 307 -5 757 297 177 9 chr3 66278310 66278566 -161246012 - L2 LINE L2 -718 2596 2131 301 290 260 5 chr3 66278882 66279082 -161245496 + L2 LINE L2 3022 3272 0 204 244 39 0 chr3 66279086 66279164 -161245414 + (TGGA)n Simple_repeat Simple_repeat 2 82 0 270 95 0 0 chr3 66279193 66279235 -161245343 + (TGGA)n Simple_repeat Simple_repeat 2 43 0 290 276 48 14 chr3 66279257 66279402 -161245176 + (TGGA)n Simple_repeat Simple_repeat 3 152 0 2091 99 10 3 chr3 66280006 66280300 -161244278 - AluSx SINE Alu -16 296 1 25 0 0 0 chr3 66280421 66280446 -161244132 + AT_rich Low_complexity Low_complexity 1 25 0 257 282 32 48 chr3 66281236 66281360 -161243218 - HAL1 LINE L1 -2 2505 2384 1950 128 0 29 chr3 66281384 66281557 -161243021 - AluSx SINE Alu -9 303 141 2358 90 0 0 chr3 66281557 66281867 -161242711 - AluY SINE Alu 0 311 2 1950 128 0 29 chr3 66281867 66282005 -161242573 - AluSx SINE Alu -171 141 1 862 193 31 52 chr3 66282019 66282211 -161242367 - MER58A DNA MER1_type 0 224 37 349 253 46 11 chr3 66282332 66282419 -161242159 + L1MC4 LINE L1 6614 6703 -1339 388 176 42 0 chr3 66282488 66282544 -161242034 - L1MC4 LINE L1 0 8041 7989 1785 160 0 22 chr3 66282544 66282856 -161241722 + AluJo SINE Alu 1 305 -7 388 176 42 0 chr3 66282856 66282904 -161241674 - L1MC4 LINE L1 -52 7989 7905 313 353 138 18 chr3 66283301 66283468 -161241110 + MIR SINE MIR 20 206 -56 329 250 98 45 chr3 66283833 66283945 -161240633 + MER91C DNA MER1_type 22 139 -1 549 270 0 0 chr3 66284187 66284302 -161240276 - L2 LINE L2 -7 3265 3151 789 162 46 12 chr3 66284376 66284549 -161240029 - MER96B DNA MER1_type? -238 179 1 1065 156 6 0 chr3 66284604 66284784 -161239794 - AluJo SINE Alu -11 301 121 6390 73 16 49 chr3 66284784 66286068 -161238510 - SVA Other Other -551 1386 433 5566 70 27 55 chr3 66286082 66286973 -161237605 - SVA Other Other -520 866 1 914 127 8 0 chr3 66286974 66287108 -161237470 - AluJo SINE Alu -177 135 1 1080 123 0 12 chr3 66287352 66287514 -161237064 + AluJb SINE Alu 138 297 -15 2101 100 7 0 chr3 66288184 66288475 -161236103 + AluSq SINE Alu 1 293 -20 261 323 52 0 chr3 66288841 66288937 -161235641 + L2 LINE L2 3137 3237 -35 24 0 0 0 chr3 66290013 66290037 -161234541 + AT_rich Low_complexity Low_complexity 1 24 0 1883 150 0 0 chr3 66290470 66290757 -161233821 + AluSq SINE Alu 1 287 -26 542 226 66 28 chr3 66291030 66291119 -161233459 + L1M4 LINE L1 2945 3029 -3117 848 173 0 0 chr3 66291119 66291252 -161233326 + FLAM_C SINE Alu 1 133 0 542 226 66 28 chr3 66291252 66291374 -161233204 + L1M4 LINE L1 3029 3164 -2982 278 248 296 0 chr3 66292343 66292468 -161232110 - MIR SINE MIR -28 234 73 2125 125 0 3 chr3 66293007 66293318 -161231260 + AluSx SINE Alu 1 310 -2 742 271 113 17 chr3 66294277 66294579 -161229999 - MER46C DNA MER2_type -7 331 1 21 0 0 0 chr3 66294710 66294731 -161229847 + AT_rich Low_complexity Low_complexity 1 21 0 225 186 0 0 chr3 66295268 66295311 -161229267 + MER103 DNA DNA 11 53 -113 232 206 73 0 chr3 66295533 66295601 -161228977 + LTR16A1 LTR ERVL 13 85 -372 588 134 0 2 chr3 66295671 66295809 -161228769 - MER53 DNA DNA -2 187 15 22 0 0 0 chr3 66295887 66295909 -161228669 + AT_rich Low_complexity Low_complexity 1 22 0 2077 105 6 32 chr3 66295950 66296083 -161228495 + AluSp SINE Alu 1 136 -177 2086 89 3 0 chr3 66296083 66296395 -161228183 + AluSp SINE Alu 1 313 0 2077 105 6 32 chr3 66296395 66296573 -161228005 + AluSp SINE Alu 136 305 -8 519 165 0 0 chr3 66296681 66296760 -161227818 - AluJ/FLAM SINE Alu -232 80 2 272 30 0 0 chr3 66296763 66296796 -161227782 - MER53 DNA DNA -156 33 1 1089 188 34 29 chr3 66296824 66296925 -161227653 + LTR16A1 LTR ERVL 209 308 -149 2998 146 16 6 chr3 66296925 66297417 -161227161 - LOR1a LTR ERV1 0 497 1 1089 188 34 29 chr3 66297417 66297554 -161227024 + LTR16A1 LTR ERVL 308 448 -9 206 284 147 11 chr3 66297699 66297794 -161226784 + MIR SINE MIR 88 195 -67 1393 126 0 18 chr3 66298260 66298482 -161226096 + AluJo SINE Alu 85 302 -10 1689 165 11 0 chr3 66298731 66299010 -161225568 + AluJb SINE Alu 6 287 -25 2141 112 3 3 chr3 66299047 66299359 -161225219 - AluSx SINE Alu 0 312 1 310 238 181 9 chr3 66299602 66299707 -161224871 - MIR SINE MIR -15 247 125 287 297 139 0 chr3 66300048 66300149 -161224429 - L2 LINE L2 -4 3309 3195 1351 192 33 0 chr3 66300687 66300958 -161223620 + AluJo SINE Alu 1 280 -32 1733 208 140 98 chr3 66300961 66301302 -161223276 + L1MD1 LINE L1 4268 4593 -1553 1744 146 7 14 chr3 66301302 66301589 -161222989 + AluJb SINE Alu 10 294 -18 1733 208 140 98 chr3 66301589 66302123 -161222455 + L1MD1 LINE L1 4593 5180 -966 4871 155 39 12 chr3 66302136 66302989 -161221589 + L1MD1 LINE L1 5305 6180 -62 2337 82 3 0 chr3 66302989 66303294 -161221284 - AluSx SINE Alu -6 306 1 1825 154 14 0 chr3 66303462 66303755 -161220823 - AluJb SINE Alu -15 297 1 267 127 0 0 chr3 66303758 66303800 -161220778 - Alu SINE Alu -264 35 1 1473 194 50 0 chr3 66304165 66304443 -161220135 - AluJo SINE Alu -20 292 1 2286 82 0 3 chr3 66304755 66305059 -161219519 - AluSc SINE Alu -6 303 1 995 170 85 10 chr3 66305527 66305727 -161218851 + MER20 DNA MER1_type 1 215 -4 1135 181 60 30 chr3 66305966 66306232 -161218346 + L1MA7 LINE L1 5953 6226 -65 852 136 9 159 chr3 66306232 66306316 -161218262 + Tigger3b DNA MER2_type 2 36 -2993 1895 118 0 61 chr3 66306316 66306646 -161217932 - AluSx SINE Alu -2 310 1 852 136 9 159 chr3 66306646 66306775 -161217803 + Tigger3b DNA MER2_type 36 183 -2846 * 1694 96 50 0 chr3 66306772 66307012 -161217566 + Tigger3b DNA MER2_type 289 540 -691 2230 84 0 7 chr3 66307012 66307311 -161217267 - AluSc SINE Alu -12 297 1 1621 117 114 0 chr3 66307311 66307584 -161216994 - AluSp SINE Alu -9 304 1 3417 211 76 18 chr3 66308612 66309669 -161214909 + L1M4 LINE L1 2340 3457 -2689 2200 95 0 0 chr3 66309681 66309975 -161214603 - AluSx SINE Alu -18 294 1 1855 112 4 0 chr3 66310161 66310420 -161214158 - AluSx SINE Alu -52 260 1 1735 161 24 0 chr3 66310710 66311001 -161213577 + AluJo SINE Alu 1 298 -14 522 212 124 0 chr3 66311011 66311124 -161213454 + L2 LINE L2 3187 3313 0 1898 126 7 0 chr3 66311371 66311648 -161212930 + AluSx SINE Alu 2 280 -32 876 125 0 29 chr3 66312270 66312406 -161212172 + FLAM_C SINE Alu 2 133 0 306 0 0 0 chr3 66312407 66312441 -161212137 + (TA)n Simple_repeat Simple_repeat 2 35 0 456 235 13 89 chr3 66312610 66312795 -161211783 - MIR SINE MIR -61 147 23 21 0 0 0 chr3 66313270 66313291 -161211287 + AT_rich Low_complexity Low_complexity 1 21 0 661 186 8 0 chr3 66313306 66313424 -161211154 + FLAM_C SINE Alu 2 120 -23 315 0 0 0 chr3 66313424 66313459 -161211119 + (CA)n Simple_repeat Simple_repeat 1 35 0 277 108 0 0 chr3 66313459 66313496 -161211082 + AluJb SINE Alu 84 120 -182 462 18 0 0 chr3 66313496 66313551 -161211027 + (CA)n Simple_repeat Simple_repeat 1 55 0 39 74 0 0 chr3 66315306 66315387 -161209191 + GC_rich Low_complexity Low_complexity 1 81 0 26 30 0 0 chr3 66315589 66315622 -161208956 + GC_rich Low_complexity Low_complexity 1 33 0 539 278 123 0 chr3 66316534 66316696 -161207882 + MIR SINE MIR 63 244 -18 2030 117 7 0 chr3 66316701 66317011 -161207567 + AluSx SINE Alu 1 312 0 1560 185 30 7 chr3 66317026 66317329 -161207249 + AluJb SINE Alu 1 310 -2 304 114 0 0 chr3 66317873 66317917 -161206661 + L1ME4a LINE L1 5531 5574 -547 286 250 0 0 chr3 66317923 66317983 -161206595 - L2 LINE L2 -3 3310 3251 442 226 0 20 chr3 66317989 66318091 -161206487 + L1ME4a LINE L1 5582 5681 -440 846 168 7 13 chr3 66318170 66318355 -161206223 + AluJb SINE Alu 129 312 0 238 242 129 25 chr3 66318366 66318493 -161206085 + L1ME4a LINE L1 5828 5940 -181 1799 147 13 13 chr3 66318493 66318792 -161205786 + AluSx SINE Alu 1 299 -13 238 242 129 25 chr3 66318792 66318856 -161205722 + L1ME4a LINE L1 5940 6071 -50 2107 114 7 0 chr3 66319508 66319798 -161204780 - AluSg SINE Alu -18 292 1 180 0 0 0 chr3 66320184 66320204 -161204374 + (TA)n Simple_repeat Simple_repeat 2 21 0 2243 159 99 10 chr3 66320204 66320679 -161203899 + L1MB8 LINE L1 5658 6178 0 2072 101 25 0 chr3 66321484 66321770 -161202808 - AluSx SINE Alu -16 296 4 1561 166 0 55 chr3 66321807 66322115 -161202463 - AluSx SINE Alu -21 291 1 224 330 22 33 chr3 66324113 66324204 -161200374 + L2 LINE L2 2937 3026 -287 4655 192 60 24 chr3 66324446 66324515 -161200063 - L1MD2 LINE L1 0 6359 6294 2264 97 3 0 chr3 66324515 66324825 -161199753 + AluSp SINE Alu 1 311 -2 4655 192 60 24 chr3 66324825 66325506 -161199072 - L1MD2 LINE L1 -65 6294 5559 2280 87 0 19 chr3 66325506 66325815 -161198763 + AluSc SINE Alu 1 303 -6 4655 192 60 24 chr3 66325815 66326105 -161198473 - L1MD2 LINE L1 -800 5559 5281 499 170 0 0 chr3 66326109 66326203 -161198375 - AluSg/x SINE Alu 0 309 216 2075 75 21 0 chr3 66326530 66326812 -161197766 - AluY SINE Alu -23 288 1 2117 129 0 0 chr3 66326813 66327115 -161197463 - AluSx SINE Alu -10 302 1 262 167 152 0 chr3 66327158 66327224 -161197354 - MER5C DNA MER1_type -248 76 1 1101 128 21 11 chr3 66327357 66327544 -161197034 + AluSg/x SINE Alu 124 312 0 1533 167 44 110 chr3 66327555 66327640 -161196938 + L1MA3 LINE L1 5521 5610 -601 1519 175 67 3 chr3 66327640 66327925 -161196653 + AluJb SINE Alu 1 303 -9 1533 167 44 110 chr3 66327925 66328017 -161196561 + L1MA3 LINE L1 5610 5707 -504 337 167 19 0 chr3 66328017 66328071 -161196507 + Alu SINE Alu 2 56 -247 1533 167 44 110 chr3 66328071 66328342 -161196236 + L1MA3 LINE L1 5707 5888 -323 1876 146 3 0 chr3 66328342 66328658 -161195920 + AluSx SINE Alu 2 318 0 1533 167 44 110 chr3 66328658 66328785 -161195793 + L1MA3 LINE L1 5888 6022 -189 25 0 0 0 chr3 66328804 66328829 -161195749 + AT_rich Low_complexity Low_complexity 1 25 0 2167 83 3 0 chr3 66328855 66329144 -161195434 - AluSc SINE Alu -19 290 1 1865 152 0 23 chr3 66329567 66329877 -161194701 - AluJb SINE Alu -9 303 1 2120 99 0 7 chr3 66329892 66330185 -161194393 - AluSg SINE Alu -19 291 1 378 325 53 13 chr3 66330346 66330497 -161194081 - MIR SINE MIR -25 237 81 260 354 23 15 chr3 66330850 66330980 -161193598 + L2 LINE L2 2947 3077 -195 250 275 0 0 chr3 66331026 66331095 -161193483 - MIR SINE MIR -61 147 79 1412 161 87 31 chr3 66331227 66331513 -161193065 + AluJb SINE Alu 1 302 -10 396 164 269 0 chr3 66331817 66331921 -161192657 + L1MB3 LINE L1 6052 6183 0 1482 117 132 15 chr3 66332088 66332353 -161192225 - AluSg SINE Alu -14 296 1 891 270 73 20 chr3 66332421 66333061 -161191517 + L2 LINE L2 2636 3313 0 189 121 0 0 chr3 66333721 66333754 -161190824 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 2092 102 10 0 chr3 66333758 66334052 -161190526 - AluSx SINE Alu -12 300 4 431 208 123 0 chr3 66334785 66334891 -161189687 - MER5B DNA MER1_type -7 171 53 1368 138 5 27 chr3 66334904 66335128 -161189450 - AluSg/x SINE Alu 0 312 94 493 222 114 30 chr3 66435757 66435924 -161088654 + MIR SINE MIR 69 249 -13 210 280 0 0 chr3 66436006 66436056 -161088522 + GA-rich Low_complexity Low_complexity 2 51 0 351 207 58 0 chr3 66437344 66437431 -161087147 - MIR SINE MIR -108 154 63 569 235 112 6 chr3 66437565 66437735 -161086843 - MIR SINE MIR -12 250 63 2023 128 3 0 chr3 66437772 66438054 -161086524 + AluJb SINE Alu 5 287 -25 456 286 22 93 chr3 66439613 66439924 -161084654 - L1ME4a LINE L1 -202 5919 5631 237 341 22 0 chr3 66440304 66440395 -161084183 - MER5B DNA MER1_type -85 93 1 960 209 126 76 chr3 66440517 66440752 -161083826 - MER113 DNA MER1_type? -47 474 252 2106 113 4 0 chr3 66440752 66441048 -161083530 - AluSp SINE Alu 0 306 10 960 209 126 76 chr3 66441048 66441256 -161083322 - MER113 DNA MER1_type? -269 252 7 787 234 5 38 chr3 66441400 66441584 -161082994 - MER45A DNA AcHobo 0 178 1 216 302 0 0 chr3 66442051 66442104 -161082474 + G-rich Low_complexity Low_complexity 3 55 0 432 292 35 0 chr3 66442169 66442282 -161082296 - MIR SINE MIR -71 191 75 473 296 63 35 chr3 66442373 66442729 -161081849 - MER115 DNA AcHobo -236 457 19 428 183 24 0 chr3 66442735 66442817 -161081761 + LTR16C LTR ERVL 406 489 -2 225 299 118 39 chr3 66443242 66443369 -161081209 + MIR SINE MIR 8 144 -118 421 198 204 72 chr3 66444204 66444242 -161080336 + MIR SINE MIR 74 106 -156 1819 121 37 50 chr3 66444242 66444540 -161080038 - AluJb SINE Alu -18 294 1 421 198 204 72 chr3 66444540 66444668 -161079910 + MIR SINE MIR 106 262 0 285 307 132 32 chr3 66445826 66446168 -161078410 + L2 LINE L2 2938 3313 0 1070 267 96 60 chr3 66446947 66447116 -161077462 + MLT1K LTR MaLR 1 163 -425 2238 95 66 23 chr3 66447116 66447464 -161077114 + THE1B LTR MaLR 1 363 -1 1070 267 96 60 chr3 66447464 66447826 -161076752 + MLT1K LTR MaLR 163 551 -37 293 256 179 46 chr3 66448045 66448240 -161076338 + MIR SINE MIR 38 258 -4 258 32 0 0 chr3 66448323 66448354 -161076224 + (TAAAA)n Simple_repeat Simple_repeat 4 34 0 417 243 54 0 chr3 66448916 66449027 -161075551 + MIR SINE MIR 77 193 -69 298 214 155 39 chr3 66449067 66449170 -161075408 - L2 LINE L2 0 3272 3158 182 300 57 14 chr3 66449644 66449714 -161074864 + L2 LINE L2 3211 3283 -30 267 295 95 0 chr3 66449793 66449888 -161074690 - MER91A DNA MER1_type 0 196 93 208 192 96 55 chr3 66449886 66449959 -161074619 - MER91A DNA MER1_type -23 173 98 * 546 243 88 11 chr3 66450810 66450991 -161073587 + MER117 DNA MER1_type 1 195 -2 803 236 47 17 chr3 66451280 66451513 -161073065 + MIR SINE MIR 13 252 -10 422 176 0 11 chr3 66452355 66452446 -161072132 + (CA)n Simple_repeat Simple_repeat 1 90 0 379 353 7 0 chr3 66452460 66452599 -161071979 + (CA)n Simple_repeat Simple_repeat 2 141 0 243 296 56 80 chr3 66452619 66452781 -161071797 + MIR SINE MIR 35 192 -70 247 289 13 26 chr3 66453143 66453219 -161071359 + MLT1K LTR MaLR 126 200 -388 207 139 0 0 chr3 66453263 66453299 -161071279 + (GA)n Simple_repeat Simple_repeat 2 37 0 313 228 83 129 chr3 66453412 66453573 -161071005 + MLT1K LTR MaLR 401 553 -35 2611 42 7 3 chr3 66453573 66453879 -161070699 - AluY SINE Alu -4 307 1 313 228 83 129 chr3 66453879 66453910 -161070668 + MLT1K LTR MaLR 553 584 -4 411 188 12 24 chr3 66453921 66454006 -161070572 - Charlie4 DNA MER1_type 0 1961 1878 505 138 108 0 chr3 66454051 66454181 -161070397 - Charlie4 DNA MER1_type -77 1884 1741 203 349 101 9 chr3 66454984 66455093 -161069485 + MIR3 SINE MIR 14 132 -76 688 233 8 2 chr3 66455231 66455840 -161068738 + (TCCA)n Simple_repeat Simple_repeat 1 613 0 556 285 147 21 chr3 66455847 66456180 -161068398 - L2 LINE L2 -1 3312 2938 290 205 13 0 chr3 66456203 66456281 -161068297 + CT-rich Low_complexity Low_complexity 2 80 0 227 161 0 81 chr3 66456846 66456908 -161067670 - L1PBa LINE L1 -6410 453 397 634 271 51 38 chr3 66457731 66457967 -161066611 - MIR SINE MIR -11 251 13 215 99 23 47 chr3 66457992 66458048 -161066530 + MIR SINE MIR 95 149 -59 415 240 14 0 chr3 66458768 66458914 -161065664 + (TCCA)n Simple_repeat Simple_repeat 2 149 0 182 36 0 36 chr3 66458932 66458960 -161065618 + (TTCC)n Simple_repeat Simple_repeat 4 30 0 275 285 264 0 chr3 66459086 66459230 -161065348 - MIR SINE MIR -44 218 37 248 274 98 0 chr3 66459635 66459737 -161064841 + MIR SINE MIR 37 148 -60 209 83 28 0 chr3 66460245 66460281 -161064297 + (GA)n Simple_repeat Simple_repeat 2 38 0 211 111 0 28 chr3 66460331 66460367 -161064211 + (CAGAGA)n Simple_repeat Simple_repeat 1 35 0 259 349 46 0 chr3 66461136 66461245 -161063333 - MIR SINE MIR -73 189 76 341 309 30 42 chr3 66461332 66461497 -161063081 + L2 LINE L2 2926 3088 -184 652 249 46 30 chr3 66461539 66461736 -161062842 + MLT1K LTR MaLR 162 361 -227 283 271 157 29 chr3 66461861 66462001 -161062577 + MIR SINE MIR 20 177 -85 225 211 63 21 chr3 66462950 66463045 -161061533 + (CAGAGA)n Simple_repeat Simple_repeat 6 104 0 296 256 190 36 chr3 66463643 66463838 -161060740 - MIR SINE MIR -29 233 9 1104 184 15 0 chr3 66463855 66464051 -161060527 - MER58A DNA MER1_type -21 203 5 246 296 296 5 chr3 66464469 66464668 -161059910 + MIR SINE MIR 4 260 -2 307 266 124 24 chr3 66465299 66465468 -161059110 - MIR SINE MIR 0 262 77 1309 282 53 38 chr3 66465549 66465766 -161058812 + MLT1K LTR MaLR 31 243 -345 2193 119 7 0 chr3 66465766 66466061 -161058517 - AluSx SINE Alu -15 297 1 1309 282 53 38 chr3 66466061 66466393 -161058185 + MLT1K LTR MaLR 243 588 0 677 312 42 4 chr3 66466906 66467143 -161057435 + MIR SINE MIR 8 253 -9 212 291 139 0 chr3 66467257 66467343 -161057235 + L2 LINE L2 3151 3248 -24 431 306 27 64 chr3 66467365 66467584 -161056994 - MIR SINE MIR -16 246 36 490 283 6 3 chr3 66468535 66468708 -161055870 + MIR SINE MIR 2 218 -44 316 221 59 0 chr3 66468800 66468868 -161055710 - MIR SINE MIR -59 149 78 594 253 77 6 chr3 66469099 66469281 -161055297 - MER117 DNA MER1_type -2 195 1 542 260 92 55 chr3 66471024 66471547 -161053031 - LTR48 LTR ERV1 0 787 1 210 100 0 0 chr3 66471622 66471662 -161052916 - L2 LINE L2 -254 3059 3020 1614 238 24 48 chr3 66471664 66472164 -161052414 - MLT1D LTR MaLR -17 488 1 329 277 164 34 chr3 66472176 66472302 -161052276 + L2 LINE L2 3113 3271 -42 2310 64 0 0 chr3 66472302 66472629 -161051949 + AluY SINE Alu 17 343 0 329 277 164 34 chr3 66472629 66472678 -161051900 + L2 LINE L2 3271 3312 -1 438 280 4 0 chr3 66473634 66473907 -161050671 + (ATG)n Simple_repeat Simple_repeat 1 274 0 1268 236 46 41 chr3 66474140 66474534 -161050044 + LTR52 LTR ERVL 21 416 -5 440 309 68 12 chr3 66474538 66474700 -161049878 - MIR SINE MIR -89 173 3 2131 161 3 6 chr3 66474777 66475143 -161049435 + MLT1A1 LTR MaLR 1 365 0 336 205 12 24 chr3 66475294 66475377 -161049201 - MLT1L LTR MaLR -359 256 175 222 37 0 0 chr3 66476242 66476269 -161048309 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 265 275 67 25 chr3 66476489 66476609 -161047969 + LTR67 LTR ERVL 429 553 -4 228 150 0 0 chr3 66477087 66477127 -161047451 + L2 LINE L2 3269 3308 -5 2300 197 46 48 chr3 66477281 66477824 -161046754 + MLT1F LTR MaLR 1 542 0 244 299 175 0 chr3 66478453 66478590 -161045988 - MER103 DNA DNA -3 163 3 198 0 0 0 chr3 66478794 66478816 -161045762 + (TTTTG)n Simple_repeat Simple_repeat 1 22 0 791 272 50 44 chr3 66478840 66478979 -161045599 - L1MD2 LINE L1 -15 6344 6207 2106 148 0 3 chr3 66478979 66479277 -161045301 + AluJb SINE Alu 1 297 -15 791 272 50 44 chr3 66479277 66479640 -161044938 - L1MD2 LINE L1 -152 6207 5802 5868 123 48 26 chr3 66479645 66480569 -161044009 + Tigger1 DNA MER2_type 1 951 -1467 3910 92 18 2 chr3 66480569 66481114 -161043464 - MER41A LTR ERV1 0 554 1 5868 123 48 26 chr3 66481114 66481218 -161043360 + Tigger1 DNA MER2_type 951 1051 -1367 560 82 71 20 chr3 66481770 66481868 -161042710 + MER4A LTR ERV1 1 103 -561 * 1775 136 11 27 chr3 66481861 66482216 -161042362 + MER4A LTR ERV1 257 664 0 2768 81 99 45 chr3 66482218 66482724 -161041854 + MER4A-int LTR ERV1 1 586 -6012 275 129 0 106 chr3 66482767 66482852 -161041726 + MER4A-int LTR ERV1 751 826 -5772 1004 267 47 14 chr3 66482902 66483198 -161041380 + MER4A-int LTR ERV1 1854 2159 -4172 4258 112 51 15 chr3 66483264 66484165 -161040413 + MER4B-int LTR ERV1 198 1149 -757 216 97 0 0 chr3 66484166 66484197 -161040381 + (TG)n Simple_repeat Simple_repeat 2 32 0 4176 72 79 6 chr3 66484215 66484897 -161039681 + MER4B-int LTR ERV1 1764 2495 -4103 1419 152 58 0 chr3 66484897 66485140 -161039438 - LTR8 LTR ERV1 -434 257 1 2564 106 84 28 chr3 66485140 66485912 -161038666 + MER4-int LTR ERV1 2737 4138 -2460 1645 115 130 0 chr3 66485915 66486185 -161038393 - MER51B LTR ERV1 -72 305 1 1289 167 0 0 chr3 66486186 66486378 -161038200 + AluJo SINE Alu 110 301 -11 412 236 0 0 chr3 66487031 66487103 -161037475 - AluJ/FRAM SINE Alu -13 299 228 200 259 99 49 chr3 66487348 66487429 -161037149 + L2 LINE L2 3148 3232 -40 213 291 50 99 chr3 66488027 66488168 -161036410 - L3 LINE CR1 -9 1568 1435 200 264 75 0 chr3 66489225 66489278 -161035300 - MER5A DNA MER1_type -88 101 45 612 253 109 0 chr3 66489426 66489600 -161034978 + MIR SINE MIR 57 249 -13 464 191 30 89 chr3 66489934 66490102 -161034476 - MER104 DNA Tc2 -21 159 2 393 356 69 9 chr3 66490103 66490319 -161034259 - MIR SINE MIR -30 232 4 506 321 56 26 chr3 66490422 66490690 -161033888 - L2 LINE L2 -3 3269 2994 374 229 123 14 chr3 66490745 66491030 -161033548 + MLT1J2 LTR MaLR 67 409 0 214 312 106 28 chr3 66491033 66491174 -161033404 - L2 LINE L2 -299 2973 2822 184 445 33 0 chr3 66491349 66491531 -161033047 - L2 LINE L2 -803 2511 2324 380 252 105 35 chr3 66491991 66492134 -161032444 - MER63A DNA MER1_type -8 202 50 226 323 97 0 chr3 66492230 66492354 -161032224 + L2 LINE L2 2404 2539 -775 567 312 164 19 chr3 66492375 66492550 -161032028 + L2 LINE L2 2887 3035 -278 2109 97 4 4 chr3 66492550 66492829 -161031749 - AluSp SINE Alu -8 305 27 567 312 164 19 chr3 66492829 66493025 -161031553 + L2 LINE L2 3035 3312 -1 1485 201 51 106 chr3 66493692 66494394 -161030184 + MLT1E LTR MaLR 1 593 0 345 307 150 0 chr3 66494574 66494701 -161029877 - L2 LINE L2 -6 3266 3121 197 254 34 17 chr3 66494708 66494767 -161029811 - L2 LINE L2 0 3272 3213 3833 173 23 99 chr3 66494830 66494979 -161029599 - MER63C DNA MER1_type -130 930 771 1651 189 39 7 chr3 66494979 66495265 -161029313 + AluJo SINE Alu 1 295 -17 3833 173 23 99 chr3 66495265 66496122 -161028456 - MER63C DNA MER1_type -289 771 1 609 283 34 19 chr3 66496586 66496791 -161027787 - MIR SINE MIR -32 230 23 224 154 19 0 chr3 66496892 66496944 -161027634 + (ATG)n Simple_repeat Simple_repeat 2 54 0 225 326 70 0 chr3 66497038 66497124 -161027454 - L2 LINE L2 -1 3312 3221 183 314 119 8 chr3 66497150 66497268 -161027310 + L2 LINE L2 3178 3308 -5 239 276 0 0 chr3 66498419 66498477 -161026101 + GA-rich Low_complexity Low_complexity 1 58 0 317 283 84 30 chr3 66498480 66498646 -161025932 + L1ME4a LINE L1 5936 6110 -11 231 247 68 0 chr3 66498684 66498757 -161025821 + MLT1E1 LTR MaLR 120 197 -457 15036 133 14 107 chr3 66498783 66502183 -161022395 + L1P LINE L1 12 3095 -3051 1985 94 8 0 chr3 66502283 66502539 -161022039 - AluSx SINE Alu -54 258 1 308 304 44 44 chr3 66502684 66502819 -161021759 + MIR SINE MIR 12 146 -116 2456 99 148 8 chr3 66502877 66503270 -161021308 + LTR7 LTR ERV1 1 448 -2 182 235 206 20 chr3 66503286 66503388 -161021190 - L2 LINE L2 -3 3269 3149 1097 292 106 10 chr3 66503978 66504628 -161019950 - L2 LINE L2 0 3313 2600 355 269 43 0 chr3 66504626 66504719 -161019859 + L2 LINE L2 3170 3266 -6 * 197 378 27 9 chr3 66504779 66504890 -161019688 - MER5A DNA MER1_type -38 151 39 493 328 98 14 chr3 66504911 66505280 -161019298 - MLT1J LTR MaLR 0 511 112 225 0 0 0 chr3 66506285 66506310 -161018268 + (T)n Simple_repeat Simple_repeat 1 25 0 556 220 240 0 chr3 66506600 66506750 -161017828 + MER5A DNA MER1_type 4 189 0 289 120 0 0 chr3 66507685 66507735 -161016843 + Alu SINE Alu 252 301 0 27 0 0 0 chr3 66507778 66507805 -161016773 + AT_rich Low_complexity Low_complexity 1 27 0 531 318 114 16 chr3 66508413 66508728 -161015850 + L2 LINE L2 2920 3265 -7 400 285 49 16 chr3 66509241 66509364 -161015214 + MIR SINE MIR 65 191 -71 510 17 0 0 chr3 66509860 66509919 -161014659 + (GA)n Simple_repeat Simple_repeat 2 60 0 181 143 0 0 chr3 66510042 66510070 -161014508 - L2 LINE L2 -24 3289 3262 206 216 0 0 chr3 66510087 66510124 -161014454 + L2 LINE L2 3266 3302 -11 520 308 95 56 chr3 66511445 66511941 -161012637 - L2 LINE L2 -2 3270 2671 592 219 27 20 chr3 66512121 66512267 -161012311 + MER45A DNA AcHobo 32 178 0 22 0 0 0 chr3 66512319 66512341 -161012237 + AT_rich Low_complexity Low_complexity 1 22 0 284 100 183 0 chr3 66513101 66513161 -161011417 + MER58 DNA MER1_type 188 258 -83 333 271 42 34 chr3 66513186 66513304 -161011274 + MIR SINE MIR 123 241 -21 222 279 115 10 chr3 66513317 66513421 -161011157 + MER91C DNA MER1_type 1 115 -25 854 201 11 6 chr3 66513512 66513686 -161010892 - MER5B DNA MER1_type 0 178 4 504 255 139 19 chr3 66514433 66514649 -161009929 + MIR SINE MIR 2 243 -19 428 254 68 33 chr3 66514704 66514874 -161009704 - MIR SINE MIR -37 171 8 205 191 43 21 chr3 66515992 66516039 -161008539 - L2 LINE L2 -14 3258 3211 * 707 288 22 31 chr3 66516005 66516227 -161008351 - MIR SINE MIR -22 240 21 263 273 129 30 chr3 66517294 66517426 -161007152 + MIR SINE MIR 89 233 -29 195 232 29 101 chr3 66517468 66517537 -161007041 + L2 LINE L2 3249 3312 -1 2286 115 6 10 chr3 66517562 66517874 -161006704 + AluSx SINE Alu 1 311 -1 637 301 44 5 chr3 66518178 66518381 -161006197 - L2 LINE L2 0 3313 3103 1900 160 7 3 chr3 66519688 66519981 -161004597 - AluJb SINE Alu -8 304 11 294 115 0 0 chr3 66521271 66521323 -161003255 + (TG)n Simple_repeat Simple_repeat 1 52 0 773 209 39 11 chr3 66521398 66521580 -161002998 + MER53 DNA DNA 3 189 0 381 308 213 0 chr3 66521837 66522048 -161002530 + MIR SINE MIR 7 262 0 2108 114 4 0 chr3 66522074 66522375 -161002203 - AluSx SINE Alu 0 302 1 322 346 74 6 chr3 66522448 66522610 -161001968 + L1ME4a LINE L1 5944 6116 -5 2353 82 10 0 chr3 66522617 66522911 -161001667 + AluSq SINE Alu 1 297 -16 1465 157 4 28 chr3 66522941 66523196 -161001382 - AluJo SINE Alu 0 312 64 401 348 15 0 chr3 66523388 66523523 -161001055 + MIR3 SINE MIR 15 151 -57 263 253 179 0 chr3 66523533 66523628 -161000950 + L2 LINE L2 3202 3313 0 363 211 0 63 chr3 66523806 66523887 -161000691 + MIR SINE MIR 87 163 -99 2642 80 0 89 chr3 66523887 66524301 -161000277 + MER51B LTR ERV1 1 377 0 363 211 0 63 chr3 66524301 66524314 -161000264 + MIR SINE MIR 163 175 -87 22 0 0 0 chr3 66524799 66524821 -160999757 + GC_rich Low_complexity Low_complexity 1 22 0 271 261 14 0 chr3 66525645 66525714 -160998864 + GA-rich Low_complexity Low_complexity 3 72 0 1629 127 0 41 chr3 66525731 66525998 -160998580 + AluJo SINE Alu 51 306 -6 563 274 81 36 chr3 66526579 66526751 -160997827 + MIR SINE MIR 23 209 -53 405 0 0 0 chr3 66526751 66526796 -160997782 + (TG)n Simple_repeat Simple_repeat 1 45 0 563 274 81 36 chr3 66526796 66526846 -160997732 + MIR SINE MIR 209 255 -7 486 252 136 35 chr3 66527132 66527316 -160997262 - MIR SINE MIR -52 210 3 335 293 61 0 chr3 66527323 66527422 -160997156 - MIR SINE MIR -67 195 91 1631 109 45 0 chr3 66528006 66528227 -160996351 - AluSx SINE Alu -81 231 1 449 259 134 0 chr3 66528238 66528350 -160996228 - MIR SINE MIR -113 149 23 188 135 0 54 chr3 66528662 66528699 -160995879 - L3b LINE CR1 -123 1460 1426 231 36 0 0 chr3 66528709 66528737 -160995841 + (TG)n Simple_repeat Simple_repeat 1 28 0 1842 128 11 64 chr3 66528769 66529145 -160995433 - L1MC3 LINE L1 0 7785 7430 259 292 79 0 chr3 66529165 66529254 -160995324 + L2 LINE L2 2929 3024 -248 1291 264 109 39 chr3 66529271 66529744 -160994834 + L2 LINE L2 2127 2662 -652 1863 132 62 51 chr3 66529744 66530115 -160994463 - THE1C LTR MaLR 0 375 1 1291 264 109 39 chr3 66530115 66530312 -160994266 + L2 LINE L2 2662 2844 -470 607 291 67 63 chr3 66530324 66530771 -160993807 - L2 LINE L2 -47 3266 2818 609 321 107 28 chr3 66530774 66531166 -160993412 + L2 LINE L2 2850 3272 0 10476 145 5 23 chr3 66531648 66534002 -160990576 + HERVH LTR ERV1 4636 6948 -765 322 137 0 0 chr3 66533996 66534047 -160990531 + HERVH LTR ERV1 7663 7713 0 * 3444 109 11 9 chr3 66534048 66534588 -160989990 + HERVH LTR ERV1 7173 7713 0 854 197 62 122 chr3 66534588 66535024 -160989554 + LTR7 LTR ERV1 1 410 -40 2276 101 0 3 chr3 66535715 66536013 -160988565 + AluSx SINE Alu 1 297 -15 1635 243 31 53 chr3 66536036 66536616 -160987962 - L1ME3 LINE L1 -50 6112 5546 404 284 94 0 chr3 66536825 66536952 -160987626 + L2 LINE L2 3175 3313 0 424 286 16 106 chr3 66536964 66537219 -160987359 - MIR SINE MIR 0 262 31 313 87 0 0 chr3 66537253 66537299 -160987279 - MIR SINE MIR -118 144 99 781 296 25 42 chr3 66538081 66538254 -160986324 - L1MC4a LINE L1 -334 5787 5732 2370 114 0 0 chr3 66538254 66538562 -160986016 - AluSq SINE Alu -5 308 1 781 296 25 42 chr3 66538562 66538809 -160985769 - L1MC4a LINE L1 -389 5732 5483 784 222 16 21 chr3 66538829 66539023 -160985555 + L1ME3A LINE L1 5944 6136 -34 1548 131 165 11 chr3 66539036 66539296 -160985282 - AluSg SINE Alu 0 300 1 421 192 136 40 chr3 66539516 66539641 -160984937 - MIR SINE MIR -42 220 84 517 288 68 16 chr3 66539697 66539888 -160984690 - MIR SINE MIR -31 231 31 679 203 14 0 chr3 66539901 66540049 -160984529 + MER3 DNA MER1_type 9 158 -51 276 248 291 0 chr3 66540283 66540400 -160984178 + MIR SINE MIR 96 246 -16 225 154 0 26 chr3 66540369 66540408 -160984170 + L2 LINE L2 3261 3298 -15 * 374 302 28 34 chr3 66540851 66541030 -160983548 - L1MC/D LINE L1 -2050 5758 5581 901 286 63 42 chr3 66541473 66542042 -160982536 + L1MC4a LINE L1 5335 5915 -1893 234 98 24 0 chr3 66542116 66542157 -160982421 - MADE1 DNA Mariner -38 42 1 271 253 0 27 chr3 66542157 66542232 -160982346 + (TATATG)n Simple_repeat Simple_repeat 4 76 0 429 284 26 68 chr3 66542233 66542423 -160982155 + L1ME4a LINE L1 5937 6118 -3 329 302 21 0 chr3 66542616 66542712 -160981866 - MIR SINE MIR -16 246 149 1187 231 44 80 chr3 66542716 66543167 -160981411 - LTR16A1 LTR ERVL -9 448 14 298 174 143 0 chr3 66543167 66543237 -160981341 - MIR SINE MIR -59 149 70 373 290 114 0 chr3 66543709 66543840 -160980738 - MIR3 SINE MIR -5 203 58 205 283 0 22 chr3 66544000 66544013 -160980565 - MIR SINE MIR -1 261 217 206 212 0 0 chr3 66544013 66544046 -160980532 - L2 LINE L2 -19 3294 3262 589 266 28 38 chr3 66544049 66544303 -160980275 - L1MEc LINE L1 -5316 924 667 639 341 47 11 chr3 66544662 66545023 -160979555 - L1MEc LINE L1 -5987 409 36 292 221 168 32 chr3 66545110 66545205 -160979373 - MIR SINE MIR -82 126 19 2342 124 0 0 chr3 66545403 66545710 -160978868 - AluSx SINE Alu -5 307 1 280 271 93 9 chr3 66545850 66545957 -160978621 - MER103 DNA DNA -20 146 31 554 246 133 25 chr3 66546183 66546423 -160978155 + MLT1K LTR MaLR 317 582 -6 536 213 65 47 chr3 66546712 66546881 -160977697 + MLT1E LTR MaLR 1 172 -421 1386 238 43 49 chr3 66546917 66547362 -160977216 + MLT1E LTR MaLR 148 589 -4 612 262 153 5 chr3 66547366 66547568 -160977010 + MIR SINE MIR 26 257 -5 267 219 55 68 chr3 66547670 66547743 -160976835 - MIR SINE MIR -95 113 42 382 194 290 0 chr3 66547842 66547935 -160976643 - MIR SINE MIR -88 174 55 360 245 23 40 chr3 66548476 66548603 -160975975 + MIR SINE MIR 39 162 -62 300 342 0 74 chr3 66548655 66548804 -160975774 - HAL1b LINE L1 -17 1331 1194 223 195 49 0 chr3 66549241 66549282 -160975296 + MIR SINE MIR 192 234 -28 456 151 0 0 chr3 66549559 66549632 -160974946 - MIR SINE MIR -122 140 68 568 232 186 10 chr3 66549768 66549977 -160974601 + MIR SINE MIR 7 249 -13 2446 124 21 13 chr3 66550193 66550565 -160974013 + THE1C LTR MaLR 1 375 0 733 276 95 0 chr3 66550974 66551195 -160973383 + MIR SINE MIR 21 262 0 394 266 162 7 chr3 66551456 66551610 -160972968 + L1ME LINE L1 5643 5820 -301 1837 145 14 20 chr3 66551616 66551912 -160972666 + AluJb SINE Alu 1 294 -18 22 0 0 0 chr3 66552086 66552108 -160972470 + AT_rich Low_complexity Low_complexity 1 22 0 479 249 40 17 chr3 66552479 66552682 -160971896 - MIR SINE MIR 0 262 7 478 251 64 64 chr3 66552757 66553024 -160971554 + L2 LINE L2 2812 3078 -194 449 294 61 55 chr3 66553537 66553811 -160970767 - L1M4 LINE L1 -2379 3767 3489 2350 114 0 0 chr3 66553811 66554119 -160970459 - AluSq SINE Alu -3 310 3 449 294 61 55 chr3 66554119 66554137 -160970441 - L1M4 LINE L1 -2657 3489 3473 2038 117 4 11 chr3 66554147 66554421 -160970157 - AluSx SINE Alu -40 272 1 397 289 78 11 chr3 66554486 66554770 -160969808 - L1M4 LINE L1 -2921 3225 2923 345 277 212 29 chr3 66554816 66554930 -160969648 - L2 LINE L2 -128 3185 3093 2176 130 0 10 chr3 66554930 66555238 -160969340 + AluJb SINE Alu 2 306 -6 345 277 212 29 chr3 66555238 66555397 -160969181 - L2 LINE L2 -220 3093 2862 187 301 58 58 chr3 66555438 66555541 -160969037 - L2 LINE L2 -562 2752 2650 1211 196 131 56 chr3 66555672 66555842 -160968736 + MLT1C LTR MaLR 1 157 -310 378 0 0 0 chr3 66555842 66555884 -160968694 + (CA)n Simple_repeat Simple_repeat 2 43 0 1211 196 131 56 chr3 66555884 66556094 -160968484 + MLT1C LTR MaLR 157 419 -48 2421 75 3 0 chr3 66556094 66556387 -160968191 - AluY SINE Alu -17 294 1 1211 196 131 56 chr3 66556387 66556434 -160968144 + MLT1C LTR MaLR 419 461 -6 458 290 28 28 chr3 66557218 66557394 -160967184 + MIR SINE MIR 19 194 -68 1848 144 10 14 chr3 66558321 66558612 -160965966 - AluJb SINE Alu -17 295 6 366 319 192 6 chr3 66558782 66559105 -160965473 + L2 LINE L2 2888 3270 -2 408 296 86 0 chr3 66559934 66560096 -160964482 - MER91A DNA MER1_type -20 176 1 1008 147 0 0 chr3 66560628 66560784 -160963794 + MER45A DNA AcHobo 3 158 -20 254 338 0 0 chr3 66560817 66560888 -160963690 - MIR3 SINE MIR -26 182 112 407 225 220 29 chr3 66560900 66561073 -160963505 - MIR SINE MIR -36 226 21 355 254 94 29 chr3 66561158 66561296 -160963282 + MIR SINE MIR 44 190 -72 1986 131 0 8 chr3 66561485 66561753 -160962825 + AluSx SINE Alu 14 279 -33 290 273 23 0 chr3 66562825 66562913 -160961665 - MIR SINE MIR -80 182 93 422 296 145 11 chr3 66562985 66563171 -160961407 + MIR SINE MIR 15 225 -37 230 291 86 26 chr3 66564158 66564275 -160960303 + L2 LINE L2 3121 3244 -28 4123 139 20 27 chr3 66564417 66565116 -160959462 + MER72 LTR ERV1 1 694 -28 232 297 234 7 chr3 66565282 66565427 -160959151 - MIR SINE MIR -48 214 37 210 267 74 108 chr3 66565472 66565648 -160958930 - MER5A DNA MER1_type -16 173 4 676 240 68 0 chr3 66565758 66565904 -160958674 - MIR SINE MIR -33 229 74 204 338 14 14 chr3 66567095 66567166 -160957412 + MIR SINE MIR 26 96 -112 309 26 0 0 chr3 66567176 66567214 -160957364 + (TG)n Simple_repeat Simple_repeat 1 38 0 195 229 0 62 chr3 66567258 66567306 -160957272 + L2 LINE L2 2683 2727 -587 199 191 0 48 chr3 66567555 66567597 -160956981 + L2 LINE L2 3256 3295 -18 413 299 110 52 chr3 66567720 66568101 -160956477 + L2 LINE L2 2863 3265 -48 233 224 15 60 chr3 66568123 66568190 -160956388 + MIR SINE MIR 179 242 -20 215 268 158 0 chr3 66568838 66568920 -160955658 + MIR SINE MIR 53 147 -61 190 173 19 19 chr3 66569135 66569187 -160955391 + GA-rich Low_complexity Low_complexity 3 54 0 723 269 21 21 chr3 66569249 66569442 -160955136 + MIR SINE MIR 34 226 -36 477 286 129 44 chr3 66569867 66570404 -160954174 + L2 LINE L2 2578 3251 -21 688 332 24 3 chr3 66570888 66571177 -160953401 - LTR16A1 LTR ERVL -2 455 161 22 0 0 0 chr3 66571459 66571481 -160953097 + AT_rich Low_complexity Low_complexity 1 22 0 13513 100 4 5 chr3 66571583 66573657 -160950921 + L1P LINE L1 1411 3481 -2665 7026 49 24 1 chr3 66573661 66575350 -160949228 + L1PA7 LINE L1 4434 6154 0 1025 186 45 83 chr3 66575350 66575419 -160949159 + MLT1D LTR MaLR 122 192 -401 789 186 8 0 chr3 66575419 66575548 -160949030 + FLAM_A SINE Alu 1 130 -3 1025 186 45 83 chr3 66575548 66575823 -160948755 + MLT1D LTR MaLR 192 511 -82 222 218 0 81 chr3 66576457 66576544 -160948034 + (CA)n Simple_repeat Simple_repeat 1 80 0 505 266 49 17 chr3 66576839 66577024 -160947554 + MIR SINE MIR 61 253 -9 396 0 0 0 chr3 66577083 66577127 -160947451 + (CA)n Simple_repeat Simple_repeat 2 45 0 242 233 12 70 chr3 66577193 66577279 -160947299 - MIR SINE MIR -46 216 136 2609 133 67 0 chr3 66577728 66578148 -160946430 + MER83 LTR ERV1 1 448 0 469 336 106 18 chr3 66578476 66578702 -160945876 - MIR SINE MIR -1 261 16 1954 106 95 0 chr3 66579604 66579877 -160944701 - AluSx SINE Alu -13 299 1 1389 248 25 36 chr3 66580217 66580660 -160943918 + LTR16C LTR ERVL 37 474 -17 371 207 58 0 chr3 66581555 66581642 -160942936 - MIR SINE MIR -108 154 63 599 235 112 6 chr3 66581776 66581946 -160942632 - MIR SINE MIR -12 250 63 2057 125 3 0 chr3 66581983 66582271 -160942307 + AluJb SINE Alu 5 293 -19 1850 138 46 0 chr3 66582390 66582672 -160941906 + AluSx SINE Alu 1 295 -17 1931 158 17 92 chr3 66582880 66582962 -160941616 - MLT1A2 LTR MaLR 0 374 287 2359 110 7 0 chr3 66582962 66583271 -160941307 - AluSx SINE Alu -1 311 1 1931 158 17 92 chr3 66583271 66583592 -160940986 - MLT1A2 LTR MaLR -87 287 1 1939 133 3 38 chr3 66584091 66584406 -160940172 - AluJo SINE Alu -3 309 6 2027 123 62 0 chr3 66584490 66584782 -160939796 - AluSx SINE Alu -2 310 1 2251 95 7 3 chr3 66585089 66585393 -160939185 + AluSc SINE Alu 1 305 -4 434 299 113 10 chr3 66585418 66585612 -160938966 + MIR SINE MIR 47 260 -2 1372 223 40 47 chr3 66585613 66586104 -160938474 + MER34B LTR ERV1 12 556 -9 310 272 104 16 chr3 66586368 66586493 -160938085 + MIR SINE MIR 20 155 -107 316 204 194 20 chr3 66586495 66586593 -160937985 - MIR SINE MIR -12 250 136 2263 122 3 0 chr3 66586857 66587168 -160937410 + AluSx SINE Alu 1 312 0 515 273 80 5 chr3 66587465 66587652 -160936926 + MIR SINE MIR 61 261 -1 591 291 115 9 chr3 66588016 66588346 -160936232 + MLT1J2 LTR MaLR 64 428 -22 2323 116 0 0 chr3 66588671 66588981 -160935597 + AluSx SINE Alu 1 310 -2 6859 130 9 14 chr3 66588981 66589699 -160934879 + THE1C-int LTR MaLR 552 1265 -315 2238 65 3 28 chr3 66589699 66590029 -160934549 + AluY SINE Alu 1 323 0 6859 130 9 14 chr3 66590029 66590344 -160934234 + THE1C-int LTR MaLR 1265 1580 0 1960 141 61 25 chr3 66590344 66590706 -160933872 + THE1C LTR MaLR 1 375 0 3558 203 55 39 chr3 66590766 66591728 -160932850 + L1M3f LINE L1 15 1042 -4286 324 161 247 0 chr3 66591738 66591819 -160932759 - LTR64 LTR ERVK -31 527 427 1117 232 4 0 chr3 66591819 66592056 -160932522 + L1PA15-16 LINE L1 2570 2807 -4042 449 73 0 0 chr3 66592069 66592124 -160932454 - LTR9 LTR ERV1 -371 241 187 507 150 0 0 chr3 66592124 66592204 -160932374 + L1M3 LINE L1 5706 5785 -383 2203 136 0 0 chr3 66592204 66592513 -160932065 + AluSx SINE Alu 1 309 -3 264 236 0 0 chr3 66592743 66592853 -160931725 + A-rich Low_complexity Low_complexity 1 110 0 233 309 127 0 chr3 66593592 66593702 -160930876 - MLT1K LTR MaLR -462 126 3 206 139 0 28 chr3 66593756 66593792 -160930786 + (TTCTC)n Simple_repeat Simple_repeat 5 39 0 567 260 40 34 chr3 66594183 66594360 -160930218 + MER5B DNA MER1_type 1 178 0 306 343 48 29 chr3 66595212 66595419 -160929159 - L2 LINE L2 -513 2801 2591 4062 69 2 0 chr3 66595450 66595942 -160928636 + L1PA7 LINE L1 5662 6154 0 1186 229 18 79 chr3 66596032 66596412 -160928166 + MER34 LTR ERV1 3 359 -183 420 194 48 29 chr3 66596534 66596637 -160927941 + MER34 LTR ERV1 438 542 0 200 276 105 40 chr3 66596775 66596851 -160927727 - L2 LINE L2 -17 3255 3175 1061 275 99 25 chr3 66596851 66597324 -160927254 + L1MC/D LINE L1 5315 5822 -1986 269 222 14 111 chr3 66597430 66597574 -160927004 + HAL1b LINE L1 1194 1323 -25 1327 207 20 33 chr3 66597828 66598127 -160926451 + AluJb SINE Alu 1 295 -17 10801 122 19 9 chr3 66598377 66600020 -160924558 + Tigger1 DNA MER2_type 476 2135 -283 5629 178 20 10 chr3 66600568 66602113 -160922465 - L1 LINE L1 -3404 3444 1884 9364 26 0 1 chr3 66602213 66603835 -160920743 + L1PA3 LINE L1 4291 5910 -245 8621 71 110 12 chr3 66603835 66605119 -160919459 + L1P LINE L1 2 1410 -4736 1930 139 5 26 chr3 66605243 66605597 -160918981 - MER4A LTR ERV1 0 664 261 452 133 100 11 chr3 66605597 66605687 -160918891 - MER4A LTR ERV1 -566 98 1 181 188 0 0 chr3 66605884 66605916 -160918662 + L2 LINE L2 3269 3300 -13 2341 92 13 0 chr3 66605994 66606299 -160918279 - AluSp SINE Alu -4 309 1 253 231 52 50 chr3 66606345 66606457 -160918121 + MLT1K LTR MaLR 97 278 -310 3838 103 23 40 chr3 66606472 66607046 -160917532 + MER34B LTR ERV1 1 564 -1 314 250 145 0 chr3 66607060 66607184 -160917394 + MLT1K LTR MaLR 356 497 -91 1954 133 9 27 chr3 66607195 66607737 -160916841 + MER4A LTR ERV1 1 664 0 2421 251 157 19 chr3 66607939 66608659 -160915919 + L1 LINE L1 199 1017 -5832 10594 172 33 10 chr3 66608792 66610426 -160914152 + L1 LINE L1 3726 5421 -1427 216 0 0 0 chr3 66610426 66610450 -160914128 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 10594 172 33 10 chr3 66610450 66610919 -160913659 + L1 LINE L1 5421 5878 -970 225 233 0 17 chr3 66611207 66611267 -160913311 - L1M1 LINE L1 -468 5834 5776 1228 0 16 0 chr3 66611273 66611303 -160913275 + L1PA16 LINE L1 5779 5805 -361 1228 138 17 0 chr3 66611303 66611484 -160913094 + L1PA16 LINE L1 5968 6151 -15 1228 0 16 0 chr3 66611484 66611513 -160913065 + L1PA16 LINE L1 5805 6151 -15 * 1745 122 4 0 chr3 66611504 66611759 -160912819 - L1P4 LINE L1 -389 5777 5522 5261 103 25 22 chr3 66611760 66612545 -160912033 + L1MA4A LINE L1 5515 6302 -1 1606 205 140 45 chr3 66612670 66613177 -160911401 + MER34B LTR ERV1 5 559 -6 345 225 36 65 chr3 66613196 66613334 -160911244 - L2 LINE L2 -7 3306 3173 2762 201 71 10 chr3 66613334 66614002 -160910576 + Tigger7 DNA MER2_type 1 2587 0 36 40 0 0 chr3 66614046 66614096 -160910482 + AT_rich Low_complexity Low_complexity 1 50 0 2562 31 7 3 chr3 66614170 66614461 -160910117 + L1PA2 LINE L1 5864 6155 0 4899 62 11 11 chr3 66614505 66615113 -160909465 + L1PA7 LINE L1 5547 6154 0 204 40 0 0 chr3 66615132 66615157 -160909421 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1141 197 5 18 chr3 66616198 66616416 -160908162 - MER58A DNA MER1_type -9 215 1 722 327 53 46 chr3 66616465 66617224 -160907354 + L2 LINE L2 2508 3270 -2 830 158 0 0 chr3 66617669 66617789 -160906789 - FLAM_C SINE Alu -19 124 5 553 369 21 0 chr3 66617911 66618144 -160906434 - L3 LINE CR1 -72 1505 1268 210 241 81 69 chr3 66618892 66618979 -160905599 + L2 LINE L2 2967 3054 -259 959 264 153 16 chr3 66619004 66619454 -160905124 - LTR33 LTR ERVL -5 516 5 208 243 54 95 chr3 66619516 66619590 -160904988 + L2 LINE L2 3199 3269 -3 382 332 120 45 chr3 66620404 66620738 -160903840 - L2 LINE L2 -7 3265 2907 3512 260 43 29 chr3 66620936 66622134 -160902444 - L1MC4a LINE L1 -1226 6582 5368 229 279 15 15 chr3 66622134 66622202 -160902376 + (TA)n Simple_repeat Simple_repeat 2 69 0 339 243 77 81 chr3 66622246 66622505 -160902073 - L1MC4a LINE L1 -923 5223 4966 416 234 102 7 chr3 66622712 66622849 -160901729 + MER103 DNA DNA 17 166 0 22 70 0 0 chr3 66622944 66622987 -160901591 + AT_rich Low_complexity Low_complexity 1 43 0 189 0 0 0 chr3 66623320 66623341 -160901237 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 44153 43 5 1 chr3 66623341 66629451 -160895127 - L1PA4 LINE L1 -16 6139 3 240 184 0 0 chr3 66630044 66630093 -160894485 + (CA)n Simple_repeat Simple_repeat 2 50 0 251 274 162 26 chr3 66630129 66630246 -160894332 - L2 LINE L2 -1 3271 3139 336 287 30 10 chr3 66631663 66631764 -160892814 - MIR SINE MIR -104 158 56 260 291 60 32 chr3 66631900 66632050 -160892528 + MIR3 SINE MIR 15 173 -65 261 0 0 0 chr3 66633178 66633207 -160891371 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 294 315 20 55 chr3 66633550 66633696 -160890882 + MER5A DNA MER1_type 47 187 -2 2973 6 0 0 chr3 66633731 66634048 -160890530 + AluYb8 SINE Alu 1 317 -1 22 0 0 0 chr3 66634097 66634119 -160890459 + AT_rich Low_complexity Low_complexity 1 22 0 180 353 72 13 chr3 66634276 66634429 -160890149 - L2 LINE L2 -255 3017 2856 663 217 114 76 chr3 66634551 66634651 -160889927 + MLT1J2 LTR MaLR 20 115 -335 2047 130 10 3 chr3 66634651 66634952 -160889626 - AluSx SINE Alu -9 303 1 663 217 114 76 chr3 66634952 66635141 -160889437 + MLT1J2 LTR MaLR 115 320 -130 371 330 174 22 chr3 66635740 66635964 -160888614 + L3 LINE CR1 1238 1495 -82 590 305 219 37 chr3 66637159 66638046 -160886532 + L2 LINE L2 2226 3272 0 27 29 0 0 chr3 66639177 66639211 -160885367 + AT_rich Low_complexity Low_complexity 1 34 0 473 323 12 6 chr3 66640058 66640225 -160884353 + MIR SINE MIR 79 246 -16 272 316 33 33 chr3 66640349 66640501 -160884077 - L2 LINE L2 -43 3270 3119 21 36 0 0 chr3 66641414 66641442 -160883136 + AT_rich Low_complexity Low_complexity 1 28 0 2304 83 10 0 chr3 66641855 66642156 -160882422 + AluY SINE Alu 2 305 -6 415 244 177 62 chr3 66642157 66642256 -160882322 + MIR SINE MIR 24 110 -152 1225 126 5 10 chr3 66642256 66642462 -160882116 + L1MA6 LINE L1 6091 6295 -5 415 244 177 62 chr3 66642462 66642571 -160882007 + MIR SINE MIR 110 256 -6 667 272 58 36 chr3 66642644 66642868 -160881710 - L2 LINE L2 -2 3311 3083 40 49 0 0 chr3 66643081 66643142 -160881436 + AT_rich Low_complexity Low_complexity 1 61 0 256 293 121 0 chr3 66643518 66643634 -160880944 - L1MC/D LINE L1 -1985 5823 5694 31 68 0 0 chr3 66643699 66643758 -160880820 + AT_rich Low_complexity Low_complexity 1 59 0 318 145 61 191 chr3 66646862 66646993 -160877585 + MER5B DNA MER1_type 64 177 -1 704 253 94 16 chr3 66647067 66647312 -160877266 + Charlie8 DNA MER1_type 1 264 -2153 285 261 0 0 chr3 66647463 66647532 -160877046 + Charlie8 DNA MER1_type 1349 1417 -1000 235 328 97 30 chr3 66647532 66647666 -160876912 - L2 LINE L2 -30 3242 3100 421 241 52 26 chr3 66647931 66648047 -160876531 + MIR SINE MIR 78 196 -66 418 127 55 36 chr3 66648265 66648375 -160876203 - L1MD3 LINE L1 -4 7991 7880 30 69 0 0 chr3 66648376 66648434 -160876144 + AT_rich Low_complexity Low_complexity 1 58 0 3562 114 67 0 chr3 66648482 66649078 -160875500 - L1MA5A LINE L1 -5 6292 5657 655 245 106 36 chr3 66649191 66649571 -160875007 + L1ME4a LINE L1 5538 5955 -166 1472 168 71 24 chr3 66649571 66649868 -160874710 + AluJo SINE Alu 1 311 -1 655 245 106 36 chr3 66649868 66649932 -160874646 + L1ME4a LINE L1 5955 6013 -108 604 208 27 34 chr3 66651376 66651525 -160873053 - L2 LINE L2 -6 3307 3160 2367 89 30 15 chr3 66651525 66652129 -160872449 - L1PA11 LINE L1 0 6174 5475 905 180 43 34 chr3 66652138 66652373 -160872205 - MER33 DNA MER1_type -94 230 1 6652 60 5 65 chr3 66652678 66653685 -160870893 - SVA Other Other -2 1384 439 11646 54 1 3 chr3 66654102 66656407 -160868171 - L1P LINE L1 -3716 2430 2 11808 22 0 1 chr3 66656407 66658378 -160866200 - L1PA3 LINE L1 -245 5910 3941 41316 45 4 1 chr3 66659966 66666105 -160858473 - L1PA3 LINE L1 -3 6152 1 462 249 260 6 chr3 66666459 66666632 -160857946 + MIR SINE MIR 40 256 -6 2162 139 0 0 chr3 66668020 66668321 -160856257 + AluSx SINE Alu 1 301 -11 399 302 41 76 chr3 66668394 66668566 -160856012 + MIR3 SINE MIR 36 201 -7 22 56 0 0 chr3 66668814 66668850 -160855728 + AT_rich Low_complexity Low_complexity 1 36 0 420 129 29 0 chr3 66669688 66669758 -160854820 - AluJ/FRAM SINE Alu -9 303 232 279 54 0 0 chr3 66671595 66671632 -160852946 + (TC)n Simple_repeat Simple_repeat 1 37 0 185 0 0 39 chr3 66671639 66671665 -160852913 + (CACCC)n Simple_repeat Simple_repeat 3 27 0 1069 314 129 33 chr3 66672039 66672914 -160851664 + L2 LINE L2 2200 3186 -127 474 33 0 0 chr3 66672914 66672974 -160851604 + (CA)n Simple_repeat Simple_repeat 2 61 0 1069 314 129 33 chr3 66672974 66673096 -160851482 + L2 LINE L2 3186 3295 -18 182 143 71 0 chr3 66673583 66673625 -160850953 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 4909 128 46 5 chr3 66673625 66674451 -160850127 - Tigger1 DNA MER2_type 0 2418 1559 852 163 66 6 chr3 66674622 66674788 -160849790 - MER58 DNA MER1_type -2244 176 1 222 208 0 0 chr3 66674790 66674838 -160849740 + (TAGA)n Simple_repeat Simple_repeat 1 48 0 548 170 9 2 chr3 66674839 66674955 -160849623 + L1MC4 LINE L1 7844 8034 -8 269 252 201 37 chr3 66675678 66675892 -160848686 - MIR SINE MIR -13 249 1 463 301 113 33 chr3 66677083 66677296 -160847282 + MIR SINE MIR 3 232 -30 675 215 189 5 chr3 66678908 66678988 -160845590 - MIR SINE MIR -9 253 189 243 0 0 0 chr3 66678988 66679015 -160845563 + (TG)n Simple_repeat Simple_repeat 2 28 0 675 215 189 5 chr3 66679015 66679125 -160845453 - MIR SINE MIR -73 189 28 238 248 256 8 chr3 66679361 66679478 -160845100 - L2 LINE L2 -2455 859 714 260 347 94 20 chr3 66679488 66679733 -160844845 + L2 LINE L2 3028 3290 -23 352 280 56 9 chr3 66680172 66680279 -160844299 - MIR3 SINE MIR -89 119 8 302 303 128 37 chr3 66680357 66680545 -160844033 - MIR SINE MIR 0 262 58 330 282 0 0 chr3 66681619 66681690 -160842888 + L2 LINE L2 3243 3313 0 371 292 131 21 chr3 66681815 66682051 -160842527 - MIR SINE MIR 0 262 1 523 238 169 11 chr3 66684871 66685060 -160839518 - MIR SINE MIR -10 252 34 526 303 66 29 chr3 66685190 66685431 -160839147 - MIR SINE MIR 0 262 13 430 310 111 47 chr3 66685898 66686259 -160838319 - L3 LINE CR1 -3 1574 1191 383 323 27 12 chr3 66686509 66686709 -160837869 + MIR SINE MIR 10 212 -50 242 281 83 10 chr3 66686860 66686956 -160837622 + L2 LINE L2 3163 3265 -7 186 224 26 79 chr3 66686985 66687061 -160837517 - L3 LINE CR1 -400 1177 1106 180 286 0 36 chr3 66687510 66687566 -160837012 + L2 LINE L2 3210 3263 -9 228 125 0 0 chr3 66688392 66688424 -160836154 + LTR40a LTR ERVL 186 217 -302 2157 70 0 0 chr3 66689098 66689356 -160835222 + AluY SINE Alu 39 296 -15 4081 62 21 2 chr3 66689874 66690406 -160834172 + L1PA10 LINE L1 5627 6168 0 199 273 68 11 chr3 66690578 66690666 -160833912 - MIR3 SINE MIR -27 181 89 286 310 9 0 chr3 66690927 66691040 -160833538 + MER103 DNA DNA 1 114 -52 234 91 0 0 chr3 66691207 66691240 -160833338 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 216 86 0 0 chr3 66691249 66691284 -160833294 + (TG)n Simple_repeat Simple_repeat 1 35 0 730 216 17 11 chr3 66692842 66693018 -160831560 - MER5B DNA MER1_type -1 177 1 206 275 0 0 chr3 66694102 66694142 -160830436 + L2 LINE L2 3222 3261 -11 1867 143 135 21 chr3 66694258 66694642 -160829936 - MSTA LTR MaLR 0 428 1 317 0 0 0 chr3 66695223 66695264 -160829314 - L1PA4 LINE L1 -2 6153 6113 2114 106 0 0 chr3 66695264 66695539 -160829039 - AluSx SINE Alu -37 275 1 302 241 175 22 chr3 66696502 66696639 -160827939 - MIR SINE MIR -12 250 93 804 275 49 56 chr3 66697865 66698207 -160826371 + L2 LINE L2 2330 2670 -644 1323 133 40 20 chr3 66698207 66698456 -160826122 - L1MA7 LINE L1 0 6291 6038 804 275 49 56 chr3 66698456 66698542 -160826036 + L2 LINE L2 2670 2755 -559 2263 107 7 3 chr3 66698545 66698853 -160825725 - AluSp SINE Alu -4 309 1 397 267 30 0 chr3 66698937 66699068 -160825510 + L1 LINE L1 4143 4277 -1869 460 267 40 65 chr3 66699097 66699344 -160825234 + L1 LINE L1 4248 4488 -1658 1438 210 251 38 chr3 66699348 66699795 -160824783 - MLT1F LTR MaLR 0 542 1 394 266 33 5 chr3 66699795 66699929 -160824649 + L1 LINE L1 4490 4623 -1523 722 263 45 30 chr3 66700554 66700752 -160823826 + MLT1I LTR MaLR 77 277 -132 2393 82 0 7 chr3 66700850 66701156 -160823422 + AluSx SINE Alu 1 304 -8 254 239 91 0 chr3 66701455 66701543 -160823035 + MLT1I LTR MaLR 52 147 -262 443 268 78 0 chr3 66702161 66702314 -160822264 + MLT1I LTR MaLR 245 409 0 4154 71 5 27 chr3 66703749 66704309 -160820269 - LTR14 LTR ERVK 0 548 1 279 276 149 17 chr3 66704796 66704970 -160819608 - MIR SINE MIR -54 208 12 1707 215 130 36 chr3 66706187 66706739 -160817839 - MLT1G LTR MaLR -1 589 1 317 334 89 74 chr3 66706955 66707347 -160817231 + L2 LINE L2 2866 3263 -9 413 313 48 44 chr3 66707363 66707590 -160816988 - L2 LINE L2 -23 3249 3022 276 198 123 0 chr3 66708215 66708296 -160816282 - MIR SINE MIR -75 187 97 551 265 119 55 chr3 66708308 66708727 -160815851 - L2 LINE L2 -3 3310 2865 217 284 128 37 chr3 66709123 66709232 -160815346 - L2 LINE L2 0 3272 3154 1950 139 7 7 chr3 66709333 66709628 -160814950 - AluJb SINE Alu -17 295 1 226 267 92 17 chr3 66710432 66710552 -160814026 + L2 LINE L2 3185 3313 0 368 300 58 40 chr3 66710919 66711142 -160813436 + MLT1J LTR MaLR 226 452 -59 495 277 50 0 chr3 66711160 66711301 -160813277 + Charlie4a DNA MER1_type 25 172 -336 19340 144 27 16 chr3 66711307 66712126 -160812452 + ERVL-B2 LTR ERVL 2621 3430 -2334 2784 16 9 9 chr3 66712126 66712444 -160812134 + AluYb8 SINE Alu 1 318 0 19340 144 27 16 chr3 66712444 66712458 -160812120 + ERVL-B2 LTR ERVL 3430 3442 -2322 2107 127 46 32 chr3 66712458 66712828 -160811750 - THE1C LTR MaLR 0 375 1 19340 144 27 16 chr3 66712828 66715105 -160809473 + ERVL-B2 LTR ERVL 3442 5764 0 1139 141 106 18 chr3 66715105 66715192 -160809386 + Ricksha DNA DNA 332 438 -816 1389 218 44 14 chr3 66715192 66715485 -160809093 + MLT2B2 LTR ERVL 129 430 -85 563 0 15 0 chr3 66715493 66715560 -160809018 + (TAGA)n Simple_repeat Simple_repeat 2 69 0 1230 204 32 35 chr3 66715595 66715939 -160808639 + Charlie4a DNA MER1_type 166 508 0 414 182 12 2 chr3 66717036 66717121 -160807457 - MLT1F LTR MaLR 0 542 476 778 216 22 6 chr3 66718018 66718199 -160806379 + MIR SINE MIR 58 241 -21 5582 101 45 19 chr3 66718904 66719709 -160804869 - LTR12 LTR ERV1 0 826 1 224 286 95 19 chr3 66720000 66720105 -160804473 + L2 LINE L2 3157 3269 -3 1070 171 9 57 chr3 66721352 66721385 -160803193 - MER20 DNA MER1_type -1 218 185 4126 153 9 0 chr3 66721385 66722014 -160802564 - MER41B LTR ERV1 0 635 1 1070 171 9 57 chr3 66722014 66722208 -160802370 - MER20 DNA MER1_type -34 185 2 2306 112 3 0 chr3 66722213 66722517 -160802061 + AluSq SINE Alu 1 305 -8 1794 200 29 31 chr3 66722797 66723212 -160801366 - MLT2D LTR ERVL 0 414 1 3085 44 6 0 chr3 66723906 66724269 -160800309 - LTR10C LTR ERV1 -153 438 74 7184 74 20 48 chr3 66724458 66726414 -160798164 + SVA Other Other 20 1386 0 8433 200 17 43 chr3 66726414 66727241 -160797337 + L1PA15-16 LINE L1 2804 3651 -3198 2216 92 0 3 chr3 66727241 66727548 -160797030 - AluSq SINE Alu 0 306 1 8433 200 17 43 chr3 66727548 66727576 -160797002 + L1PA15-16 LINE L1 3651 3678 -3171 1574 172 11 11 chr3 66727576 66727855 -160796723 + AluJo SINE Alu 1 279 -33 8433 200 17 43 chr3 66727855 66729093 -160795485 + L1PA15-16 LINE L1 3678 4844 -2005 2842 180 15 17 chr3 66729288 66729817 -160794761 - Tigger1 DNA MER2_type -1890 528 1 1365 193 57 17 chr3 66730833 66731129 -160793449 - AluJb SINE Alu -3 309 2 1081 265 41 48 chr3 66734452 66734864 -160789714 + MLT1I LTR MaLR 1 409 0 414 292 21 21 chr3 66735065 66735209 -160789369 + MIR SINE MIR 89 232 -30 664 286 146 29 chr3 66735642 66736093 -160788485 - L3 LINE CR1 -194 1383 880 270 237 0 0 chr3 66736059 66736118 -160788460 + L2 LINE L2 2592 2650 -664 * 1502 125 4 12 chr3 66736133 66736373 -160788205 - LTR1B LTR ERV1 -588 238 1 406 252 128 30 chr3 66736393 66736627 -160787951 + L1ME3 LINE L1 5899 6155 -7 357 184 89 76 chr3 66737662 66737839 -160786739 - MER8 DNA MER2_type 0 239 2 356 293 85 24 chr3 66737842 66738006 -160786572 - MIR SINE MIR -71 191 18 39689 39 4 2 chr3 66738247 66744158 -160780420 + L1PA3 LINE L1 231 6152 -3 12243 27 0 2 chr3 66745750 66747966 -160776612 + L1PA2 LINE L1 3941 6154 -1 182 333 0 0 chr3 66747968 66748019 -160776559 + MIR SINE MIR 209 259 -3 2282 104 3 19 chr3 66750091 66750409 -160774169 + AluSp SINE Alu 1 313 0 4572 114 18 1 chr3 66751342 66752060 -160772518 - HSMAR2 DNA Mariner -5 1297 568 24431 30 0 0 chr3 66752064 66755783 -160768795 + L1PA2 LINE L1 2427 6151 -4 246 32 0 0 chr3 66755791 66755822 -160768756 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 2161 35 0 0 chr3 66755822 66756078 -160768500 + L1PA2 LINE L1 5899 6154 -1 1104 232 52 69 chr3 66756280 66756746 -160767832 + MER39 LTR ERV1 250 707 0 563 300 130 5 chr3 66756941 66757164 -160767414 - MIR SINE MIR -11 251 1 718 184 24 0 chr3 66758310 66758435 -160766143 - FLAM_A SINE Alu -2 131 4 312 298 286 0 chr3 66758777 66758955 -160765623 - MIR SINE MIR -11 251 23 2506 71 0 12 chr3 66759793 66760119 -160764459 - L1PA7 LINE L1 -13 6141 5820 211 296 54 114 chr3 66760149 66760429 -160764149 - L2 LINE L2 0 3272 3010 1296 125 74 0 chr3 66760443 66760659 -160763919 + L1MC1 LINE L1 5994 6225 -108 231 105 0 0 chr3 66760664 66760702 -160763876 + L1MC1 LINE L1 6280 6317 -16 420 349 59 47 chr3 66761040 66761361 -160763217 + L2 LINE L2 2948 3272 0 254 296 148 47 chr3 66761545 66761714 -160762864 - L2 LINE L2 -439 2875 2690 186 270 48 63 chr3 66761738 66761801 -160762777 - MIR SINE MIR 0 262 201 * 203 360 0 0 chr3 66761799 66761874 -160762704 - MIR SINE MIR -186 76 2 193 269 39 0 chr3 66761881 66761933 -160762645 - L2 LINE L2 -665 2649 2596 2269 135 3 0 chr3 66761941 66762297 -160762281 + L1PA16 LINE L1 5808 6164 -2 220 258 81 48 chr3 66762404 66762528 -160762050 - L2 LINE L2 -800 2514 2387 1873 112 59 14 chr3 66762530 66762817 -160761761 + AluSx SINE Alu 1 300 -12 203 246 101 0 chr3 66763909 66763978 -160760600 + MIR SINE MIR 151 226 -36 272 302 157 41 chr3 66764456 66764628 -160759950 + MIR SINE MIR 21 212 -50 223 172 172 47 chr3 66764814 66764878 -160759700 - L2 LINE L2 -4 3268 3197 437 309 116 65 chr3 66765492 66765925 -160758653 + L2 LINE L2 2818 3272 0 22 56 0 0 chr3 66766553 66766589 -160757989 + AT_rich Low_complexity Low_complexity 1 36 0 4129 158 50 5 chr3 66766844 66767691 -160756887 + L1MB7 LINE L1 5290 6165 -19 515 272 90 29 chr3 66768031 66768238 -160756340 + MIR SINE MIR 19 228 -34 229 261 27 9 chr3 66768288 66768399 -160756179 - Charlie7 DNA MER1_type -42 2570 2458 268 293 80 0 chr3 66768607 66768682 -160755896 - L2 LINE L2 -52 3220 3140 224 303 49 33 chr3 66768818 66768940 -160755638 + L3 LINE CR1 1369 1492 -85 251 235 0 0 chr3 66768979 66769030 -160755548 - L2 LINE L2 -1 3271 3221 867 239 216 3 chr3 66770722 66771073 -160753505 + L1ME3A LINE L1 5711 6136 -34 185 303 79 56 chr3 66771444 66771533 -160753045 + MER5A DNA MER1_type 40 130 -59 769 276 25 5 chr3 66774246 66774442 -160750136 - MIR SINE MIR -48 214 15 40861 31 22 1 chr3 66775631 66781656 -160742922 + L1PA2 LINE L1 4 6154 -1 2282 104 3 19 chr3 66783788 66784106 -160740472 + AluSp SINE Alu 1 313 0 4572 114 18 1 chr3 66785039 66785757 -160738821 - HSMAR2 DNA Mariner -5 1297 568 24599 28 2 4 chr3 66785761 66789486 -160735092 + L1PA3 LINE L1 2427 6155 0 441 0 0 0 chr3 66789749 66789798 -160734780 + (CA)n Simple_repeat Simple_repeat 2 50 0 271 337 93 17 chr3 66790497 66790669 -160733909 - L2 LINE L2 -3 3310 3126 2389 100 0 0 chr3 66793380 66793689 -160730889 + AluSc SINE Alu 1 309 0 2210 103 6 10 chr3 66797429 66797740 -160726838 - AluSg SINE Alu 0 310 1 337 261 23 14 chr3 66801965 66802121 -160722457 - MIR SINE MIR -77 185 56 272 291 60 32 chr3 66802257 66802407 -160722171 + MIR3 SINE MIR 15 173 -65 261 0 0 0 chr3 66803535 66803564 -160721014 + (TCTG)n Simple_repeat Simple_repeat 2 30 0 294 315 20 55 chr3 66803907 66804053 -160720525 + MER5A DNA MER1_type 47 187 -2 2936 6 0 0 chr3 66804088 66804405 -160720173 + AluYb8 SINE Alu 1 317 -1 22 0 0 0 chr3 66804454 66804476 -160720102 + AT_rich Low_complexity Low_complexity 1 22 0 180 353 72 13 chr3 66804633 66804786 -160719792 - L2 LINE L2 -255 3017 2856 663 217 114 76 chr3 66804908 66805008 -160719570 + MLT1J2 LTR MaLR 20 115 -335 2047 130 10 3 chr3 66805008 66805309 -160719269 - AluSx SINE Alu -9 303 1 663 217 114 76 chr3 66805309 66805498 -160719080 + MLT1J2 LTR MaLR 115 320 -130 371 330 174 22 chr3 66806097 66806321 -160718257 + L3 LINE CR1 1238 1495 -82 590 305 219 37 chr3 66807516 66808403 -160716175 + L2 LINE L2 2226 3272 0 27 29 0 0 chr3 66809534 66809568 -160715010 + AT_rich Low_complexity Low_complexity 1 34 0 473 323 12 6 chr3 66810415 66810582 -160713996 + MIR SINE MIR 79 246 -16 272 316 33 33 chr3 66810706 66810858 -160713720 - L2 LINE L2 -43 3270 3119 21 36 0 0 chr3 66811771 66811799 -160712779 + AT_rich Low_complexity Low_complexity 1 28 0 2304 83 10 0 chr3 66812212 66812513 -160712065 + AluY SINE Alu 2 305 -6 415 244 177 62 chr3 66812514 66812613 -160711965 + MIR SINE MIR 24 110 -152 1225 126 5 10 chr3 66812613 66812819 -160711759 + L1MA6 LINE L1 6091 6295 -5 415 244 177 62 chr3 66812819 66812928 -160711650 + MIR SINE MIR 110 256 -6 667 272 58 36 chr3 66813001 66813225 -160711353 - L2 LINE L2 -2 3311 3083 40 49 0 0 chr3 66813438 66813499 -160711079 + AT_rich Low_complexity Low_complexity 1 61 0 256 293 121 0 chr3 66813875 66813991 -160710587 - L1MC/D LINE L1 -1985 5823 5694 31 68 0 0 chr3 66814056 66814115 -160710463 + AT_rich Low_complexity Low_complexity 1 59 0 318 145 61 191 chr3 66817219 66817350 -160707228 + MER5B DNA MER1_type 64 177 -1 704 253 94 16 chr3 66817424 66817669 -160706909 + Charlie8 DNA MER1_type 1 264 -2153 285 261 0 0 chr3 66817819 66817888 -160706690 + Charlie8 DNA MER1_type 1349 1417 -1000 235 328 97 30 chr3 66817888 66818022 -160706556 - L2 LINE L2 -30 3242 3100 421 241 52 26 chr3 66818287 66818403 -160706175 + MIR SINE MIR 78 196 -66 418 127 55 36 chr3 66818621 66818731 -160705847 - L1MD3 LINE L1 -4 7991 7880 23 86 0 0 chr3 66818732 66818790 -160705788 + AT_rich Low_complexity Low_complexity 1 58 0 3559 114 67 0 chr3 66818838 66819434 -160705144 - L1MA5A LINE L1 -5 6292 5657 653 245 106 36 chr3 66819547 66819927 -160704651 + L1ME4a LINE L1 5538 5955 -166 1472 168 71 24 chr3 66819927 66820224 -160704354 + AluJo SINE Alu 1 311 -1 653 245 106 36 chr3 66820224 66820288 -160704290 + L1ME4a LINE L1 5955 6013 -108 588 215 27 34 chr3 66821732 66821881 -160702697 - L2 LINE L2 -6 3307 3160 2367 89 30 15 chr3 66821881 66822485 -160702093 - L1PA11 LINE L1 0 6174 5475 905 180 43 34 chr3 66822494 66822729 -160701849 - MER33 DNA MER1_type -94 230 1 6638 63 5 69 chr3 66823028 66824047 -160700531 - SVA Other Other 0 1386 433 5312 66 43 53 chr3 66824064 66824901 -160699677 - SVA Other Other -520 866 38 441 0 0 0 chr3 66824906 66824955 -160699623 + (GGGAGA)n Simple_repeat Simple_repeat 1 49 0 20932 181 21 33 chr3 66824956 66826527 -160698051 - L1P4 LINE L1 -684 6928 5340 2443 73 0 3 chr3 66826527 66826827 -160697751 - AluY SINE Alu -12 299 1 20932 181 21 33 chr3 66826827 66827289 -160697289 - L1P4 LINE L1 -2272 5340 4874 2255 111 54 23 chr3 66827289 66827642 -160696936 - THE1B LTR MaLR 0 364 1 11353 87 29 4 chr3 66827642 66829183 -160695395 - THE1B-int LTR MaLR 0 1580 1 2247 113 48 22 chr3 66829183 66829538 -160695040 - THE1B LTR MaLR 0 364 1 20932 181 21 33 chr3 66829538 66831660 -160692918 - L1P4 LINE L1 -2736 4876 2731 1918 174 0 0 chr3 66831660 66831958 -160692620 - AluSx SINE Alu -14 298 1 20932 181 21 33 chr3 66831958 66833415 -160691163 - L1P4 LINE L1 -4881 2731 2 280 365 44 28 chr3 66833492 66833673 -160690905 - L2 LINE L2 -193 3079 2896 1052 204 4 74 chr3 66834798 66835068 -160689510 + MIR SINE MIR 2 252 -10 4679 169 44 53 chr3 66835238 66836143 -160688435 - L1MB5 LINE L1 -8 6166 5254 1239 211 84 19 chr3 66836143 66836466 -160688112 + MER2 DNA MER2_type 1 344 0 4679 169 44 53 chr3 66836466 66836934 -160687644 - L1MB5 LINE L1 -920 5254 4806 2555 113 13 8 chr3 66836934 66837307 -160687271 - THE1C LTR MaLR 0 375 1 4679 169 44 53 chr3 66837307 66837743 -160686835 - L1MB5 LINE L1 -1368 4806 4368 38 22 0 0 chr3 66837765 66837810 -160686768 + AT_rich Low_complexity Low_complexity 1 45 0 363 316 0 9 chr3 66838186 66838300 -160686278 + MIR3 SINE MIR 83 195 -13 189 274 142 9 chr3 66838439 66838545 -160686033 - L2 LINE L2 0 3272 3153 217 290 105 32 chr3 66838610 66838734 -160685844 + MIR3 SINE MIR 5 137 -71 827 306 9 9 chr3 66839443 66839662 -160684916 + MIR SINE MIR 13 231 -31 249 266 16 0 chr3 66839679 66839743 -160684835 + (CACCAT)n Simple_repeat Simple_repeat 5 69 0 216 320 87 39 chr3 66839960 66840063 -160684515 + L2 LINE L2 2865 2972 -300 1754 152 20 10 chr3 66840131 66840428 -160684150 + AluJb SINE Alu 1 300 -12 321 68 0 0 chr3 66840578 66840622 -160683956 + (TG)n Simple_repeat Simple_repeat 2 45 0 274 216 0 0 chr3 66841240 66841291 -160683287 - MIR SINE MIR -102 160 110 2260 244 68 108 chr3 66841526 66841937 -160682641 - HAL1 LINE L1 -4 2503 2077 4667 166 15 12 chr3 66841937 66842822 -160681756 + L1MC1 LINE L1 5447 6333 0 2260 244 68 108 chr3 66842822 66843209 -160681369 - HAL1 LINE L1 -430 2077 1676 3180 92 5 9 chr3 66843209 66843657 -160680921 - L1PA10 LINE L1 -5 6163 5718 2260 244 68 108 chr3 66843657 66844280 -160680298 - HAL1 LINE L1 -831 1676 1138 295 234 0 3 chr3 66844499 66844606 -160679972 + L1M3a LINE L1 1604 2076 -4802 1300 239 60 24 chr3 66844630 66845078 -160679500 + L1ME3A LINE L1 5653 6146 -21 685 307 150 20 chr3 66845247 66845687 -160678891 - HAL1 LINE L1 -2003 504 8 738 301 73 67 chr3 66846410 66846944 -160677634 + LTR67 LTR ERVL 19 555 -2 192 40 0 0 chr3 66848152 66848177 -160676401 + (TA)n Simple_repeat Simple_repeat 1 25 0 506 238 137 55 chr3 66849297 66849662 -160674916 - HAL1 LINE L1 -125 2382 1988 193 346 82 72 chr3 66851522 66851730 -160672848 + L2 LINE L2 254 463 -2851 1002 222 36 4 chr3 66852199 66852424 -160672154 + MIR SINE MIR 20 251 -11 1456 207 92 24 chr3 66852448 66852859 -160671719 - L1ME2 LINE L1 -25 6208 5770 7118 237 74 29 chr3 66852870 66853553 -160671025 - L1ME2 LINE L1 -1363 4852 4201 1701 183 0 40 chr3 66853553 66853876 -160670702 - AluJb SINE Alu -2 310 1 7118 237 74 29 chr3 66853876 66855834 -160668744 - L1ME2 LINE L1 -2014 4201 2093 2084 176 30 41 chr3 66855834 66856271 -160668307 + MSTB1 LTR MaLR 1 432 0 7118 237 74 29 chr3 66856271 66856475 -160668103 - L1ME2 LINE L1 -4122 2093 1900 1337 158 0 0 chr3 66856493 66856689 -160667889 - AluSx SINE Alu -116 196 1 1618 266 53 53 chr3 66856689 66857557 -160667021 - L1ME2 LINE L1 -4499 1897 1030 5077 151 19 5 chr3 66857566 66858454 -160666124 - L1PB4 LINE L1 -1 6155 5255 580 275 56 32 chr3 66858441 66858779 -160665799 - L1ME2 LINE L1 -5345 1051 706 * 381 403 27 0 chr3 66858863 66859012 -160665566 + L2 LINE L2 3115 3267 -5 701 264 66 33 chr3 66859109 66859351 -160665227 - MIR SINE MIR -6 256 7 2095 134 6 13 chr3 66859566 66859879 -160664699 + AluSx SINE Alu 1 311 -1 423 252 43 36 chr3 66860977 66861116 -160663462 - Charlie8 DNA MER1_type -2193 224 85 333 342 93 37 chr3 66861579 66861740 -160662838 - L2 LINE L2 -4 3268 3099 684 243 71 10 chr3 66861868 66862068 -160662510 - MIR SINE MIR -15 247 34 21 36 0 0 chr3 66863063 66863091 -160661487 + AT_rich Low_complexity Low_complexity 1 28 0 277 328 128 11 chr3 66863392 66863572 -160661006 + L2 LINE L2 2854 3054 -218 808 212 81 4 chr3 66863908 66864258 -160660320 - MER113 DNA MER1_type? 0 521 123 44258 39 1 1 chr3 66864270 66870415 -160654163 + L1PA3 LINE L1 9 6152 -3 286 280 65 0 chr3 66870460 66870553 -160654025 - MER113 DNA MER1_type? -416 105 7 292 331 55 18 chr3 66870709 66870872 -160653706 + L2 LINE L2 2915 3083 -189 30992 43 34 2 chr3 66872596 66876514 -160648064 - L1P LINE L1 -2103 4043 2 22053 33 0 5 chr3 66876514 66879783 -160644795 - L1PA3 LINE L1 -245 5910 2658 186 118 0 0 chr3 66880657 66880691 -160643887 + (T)n Simple_repeat Simple_repeat 1 34 0 24 0 0 0 chr3 66881154 66881178 -160643400 + AT_rich Low_complexity Low_complexity 1 24 0 3706 73 30 0 chr3 66881450 66881943 -160642635 + HERVK14 LTR ERVK 1321 1828 -4117 2215 87 238 186 chr3 66881944 66882600 -160641978 + LTR12 LTR ERV1 2 691 -23 1634 193 50 22 chr3 66883711 66884162 -160640416 + L1MB7 LINE L1 4816 5268 -878 21 0 0 0 chr3 66884212 66884233 -160640345 + AT_rich Low_complexity Low_complexity 1 21 0 789 190 117 6 chr3 66884235 66884398 -160640180 - L1PA16 LINE L1 -24 6142 5962 3165 144 38 16 chr3 66884400 66885005 -160639573 + L1MB7 LINE L1 5263 5880 -304 434 314 98 45 chr3 66885028 66885365 -160639213 - L2 LINE L2 -441 2873 2519 37 39 0 0 chr3 66885367 66885418 -160639160 + AT_rich Low_complexity Low_complexity 1 51 0 286 234 117 11 chr3 66885707 66885801 -160638777 - L3 LINE CR1 -7 1570 1467 394 318 152 57 chr3 66886691 66887132 -160637446 - LTR67 LTR ERVL 0 557 75 511 180 20 0 chr3 66887133 66887233 -160637345 - MLT1F LTR MaLR -2 565 464 956 280 30 67 chr3 66887240 66887433 -160637145 - MLT1F LTR MaLR -190 352 176 183 42 0 0 chr3 66887433 66887457 -160637121 + (GA)n Simple_repeat Simple_repeat 1 24 0 956 280 30 67 chr3 66887457 66887624 -160636954 - MLT1F LTR MaLR -366 176 5 181 205 0 0 chr3 66888116 66888155 -160636423 - L2 LINE L2 -2 3311 3273 342 0 0 0 chr3 66888212 66888250 -160636328 + (TG)n Simple_repeat Simple_repeat 2 39 0 1914 115 56 0 chr3 66888250 66888519 -160636059 - AluSx SINE Alu -28 284 1 246 32 0 0 chr3 66888781 66888812 -160635766 + (TG)n Simple_repeat Simple_repeat 1 31 0 1453 176 54 18 chr3 66889377 66889656 -160634922 + AluJb SINE Alu 1 289 -23 335 246 56 32 chr3 66889909 66890034 -160634544 + MER102b DNA MER1_type 56 183 -158 308 302 23 0 chr3 66890034 66890120 -160634458 + MER96B DNA MER1_type? 1 88 -329 922 189 7 0 chr3 66890132 66890285 -160634293 + FRAM SINE Alu 1 146 -30 235 143 104 13 chr3 66890295 66890372 -160634206 + MER96B DNA MER1_type? 88 171 -246 259 196 0 0 chr3 66890631 66890677 -160633901 + MER96B DNA MER1_type? 190 235 -182 282 289 52 21 chr3 66890679 66890776 -160633802 + MER102b DNA MER1_type 196 295 -46 1281 322 121 34 chr3 66890777 66891869 -160632709 + L2 LINE L2 2076 3310 -3 3629 204 79 9 chr3 66892553 66894154 -160630424 - L1MB8 LINE L1 -37 6141 4428 818 59 0 0 chr3 66894154 66894255 -160630323 - THE1A LTR MaLR -30 325 225 1791 189 130 14 chr3 66894973 66895068 -160629510 - L1M4 LINE L1 -1444 4702 4619 252 0 0 0 chr3 66895068 66895096 -160629482 + (TA)n Simple_repeat Simple_repeat 2 29 0 2142 125 3 3 chr3 66895096 66895399 -160629179 - AluSg SINE Alu -7 303 1 1791 189 130 14 chr3 66895399 66895579 -160628999 - L1M4 LINE L1 -1527 4619 4461 2000 143 10 3 chr3 66895579 66895873 -160628705 - AluSx SINE Alu -16 296 1 1791 189 130 14 chr3 66895873 66896166 -160628412 - L1M4 LINE L1 -1685 4461 4066 457 302 122 31 chr3 66896292 66896547 -160628031 + L2 LINE L2 3036 3313 0 349 291 73 22 chr3 66896572 66896751 -160627827 - MARNA DNA Mariner -17 569 382 451 117 0 39 chr3 66897802 66897879 -160626699 - AluSg/x SINE Alu -22 290 217 1193 113 13 0 chr3 66897879 66898038 -160626540 + AluSq SINE Alu 47 207 -106 319 304 109 0 chr3 66898509 66898601 -160625977 + MER91A DNA MER1_type 90 191 -5 1552 119 32 8 chr3 66900316 66900567 -160624011 + L1PB2 LINE L1 5888 6144 -7 962 98 73 0 chr3 66900601 66900765 -160623813 - Tigger3(Golem) DNA MER2_type -570 2459 2284 471 235 0 61 chr3 66900765 66900880 -160623698 - Tigger3(Golem) DNA MER2_type -2921 108 1 24 0 0 0 chr3 66902362 66902386 -160622192 + AT_rich Low_complexity Low_complexity 1 24 0 2387 65 0 3 chr3 66902458 66902751 -160621827 + AluY SINE Alu 1 292 -19 2309 105 0 0 chr3 66902865 66903161 -160621417 + AluSx SINE Alu 1 296 -16 244 291 45 4 chr3 66903262 66903401 -160621177 + MIR SINE MIR 63 256 -6 294 281 62 21 chr3 66903415 66903511 -160621067 + L2 LINE L2 3209 3308 -5 4704 181 52 3 chr3 66903957 66905390 -160619188 + L1PBa LINE L1 1703 3344 -3518 7170 26 2 1 chr3 66905512 66906368 -160618210 + L1PA4 LINE L1 5299 6155 0 1020 245 23 8 chr3 66907188 66907445 -160617133 - MIR SINE MIR -1 261 1 228 245 280 21 chr3 66908264 66908407 -160616171 + MIR SINE MIR 83 262 0 1452 135 26 99 chr3 66908421 66908725 -160615853 - AluJo SINE Alu -30 282 1 273 318 33 75 chr3 66909240 66909454 -160615124 + L2 LINE L2 3106 3310 -3 967 300 36 66 chr3 66909859 66910529 -160614049 + L1MEd LINE L1 243 892 -5227 21 0 0 0 chr3 66910536 66910557 -160614021 + AT_rich Low_complexity Low_complexity 1 21 0 383 259 188 25 chr3 66910865 66911104 -160613474 + L1MEd LINE L1 2984 3261 -2868 582 300 79 18 chr3 66911275 66911779 -160612799 + L1MEd LINE L1 3422 3956 -2173 461 287 73 7 chr3 66911821 66911971 -160612607 - MLT1I LTR MaLR 0 409 250 226 217 33 17 chr3 66912022 66912082 -160612496 - MLT1I LTR MaLR -239 170 110 448 175 25 0 chr3 66912105 66912185 -160612393 + MLT1A1 LTR MaLR 284 365 0 681 269 156 44 chr3 66913984 66914111 -160610467 + L2 LINE L2 2958 3069 -244 1254 181 35 0 chr3 66914111 66914252 -160610326 + MER46A DNA MER2_type 3 156 -2575 324 0 0 0 chr3 66914252 66914288 -160610290 + (TG)n Simple_repeat Simple_repeat 2 37 0 1254 181 35 0 chr3 66914288 66914372 -160610206 + MER46A DNA MER2_type 156 236 0 681 269 156 44 chr3 66914372 66914564 -160610014 + L2 LINE L2 3069 3313 0 2094 121 14 59 chr3 66915010 66915365 -160609213 - MER1B DNA MER1_type 0 339 1 834 230 28 47 chr3 66915496 66915709 -160608869 - MIR SINE MIR -42 220 12 325 191 56 22 chr3 66915732 66915821 -160608757 + MER5C DNA MER1_type 33 124 -200 23 114 0 0 chr3 66916128 66916242 -160608336 + AT_rich Low_complexity Low_complexity 1 114 0 38 95 0 0 chr3 66916358 66916442 -160608136 + AT_rich Low_complexity Low_complexity 1 84 0 4469 87 18 2 chr3 66916918 66917536 -160607042 - L1PA11 LINE L1 0 6174 5547 363 211 15 108 chr3 66917887 66918032 -160606546 - MIR SINE MIR -53 155 45 30 27 0 0 chr3 66918899 66918936 -160605642 + AT_rich Low_complexity Low_complexity 1 37 0 1816 218 134 11 chr3 66919045 66919472 -160605106 + MLT2B1 LTR ERVL 1 491 -29 450 0 0 0 chr3 66919472 66919522 -160605056 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 1816 218 134 11 chr3 66919522 66919557 -160605021 + MLT2B1 LTR ERVL 491 520 0 1784 139 74 12 chr3 66920333 66920656 -160603922 + MER61A LTR ERV1 1 343 0 510 200 307 39 chr3 66920682 66920887 -160603691 - MIR SINE MIR -1 261 2 198 286 48 71 chr3 66921054 66921138 -160603440 - L2 LINE L2 -55 3258 3177 419 338 19 13 chr3 66921747 66921904 -160602674 + MIR SINE MIR 16 173 -89 397 218 30 30 chr3 66921963 66922064 -160602514 - MIR SINE MIR -3 259 159 250 352 62 14 chr3 66922237 66922382 -160602196 + MLT1I LTR MaLR 226 377 -32 354 234 13 0 chr3 66922382 66922459 -160602119 - MIR SINE MIR -109 153 76 1864 163 35 62 chr3 66923304 66923759 -160600819 + MER65A LTR ERV1 3 445 0 287 104 21 0 chr3 66924874 66924922 -160599656 + (TC)n Simple_repeat Simple_repeat 2 50 0 2088 89 4 25 chr3 66924924 66925204 -160599374 - AluSp SINE Alu -37 276 3 295 241 95 63 chr3 66925559 66925717 -160598861 + MIR SINE MIR 6 168 -94 391 246 102 18 chr3 66926341 66926489 -160598089 - MIR SINE MIR -63 145 20 509 298 0 8 chr3 66927625 66927746 -160596832 + L2 LINE L2 3193 3312 -1 592 319 71 31 chr3 66928008 66928334 -160596244 + MER102b DNA MER1_type 1 339 -2 687 295 24 64 chr3 66928460 66928755 -160595823 + MLT1H LTR MaLR 22 304 -245 311 211 36 27 chr3 66928816 66928932 -160595646 + MLT1H LTR MaLR 425 549 0 230 227 15 15 chr3 66929554 66929620 -160594958 + (TA)n Simple_repeat Simple_repeat 1 66 0 270 56 0 0 chr3 66929621 66929657 -160594921 + (TGGA)n Simple_repeat Simple_repeat 4 39 0 8788 178 27 6 chr3 66929783 66931393 -160593185 + L1PBa LINE L1 1 1644 -5219 5234 182 19 60 chr3 66931360 66931969 -160592609 + L1PBb LINE L1 8 641 -5562 * 3287 35 0 2 chr3 66931969 66932369 -160592209 + L1PA4 LINE L1 5754 6152 -3 5234 182 19 60 chr3 66932369 66934614 -160589964 + L1PBb LINE L1 641 3005 -3198 2192 128 0 0 chr3 66934614 66934911 -160589667 + AluSx SINE Alu 1 297 -15 5234 182 19 60 chr3 66934911 66935264 -160589314 + L1PBb LINE L1 3005 3371 -2832 281 361 98 67 chr3 66935488 66935845 -160588733 - L2 LINE L2 -25 3247 2880 694 173 12 71 chr3 66938336 66938525 -160586053 - MER63 DNA MER1_type -25 1663 7 246 247 12 25 chr3 66938837 66938999 -160585579 + GA-rich Low_complexity Low_complexity 3 162 0 246 350 12 0 chr3 66939010 66939090 -160585488 + GA-rich Low_complexity Low_complexity 2 82 0 835 126 31 185 chr3 66939531 66939600 -160584978 - MER5A DNA MER1_type -1 188 110 2532 158 45 45 chr3 66939600 66940177 -160584401 + L1MA5 LINE L1 5719 6295 -5 835 126 31 185 chr3 66940177 66940329 -160584249 - MER5A DNA MER1_type -79 110 1 463 266 133 17 chr3 66941195 66941428 -160583150 - MLT1L LTR MaLR -1 614 355 324 346 43 0 chr3 66941453 66941615 -160582963 - MLT1K LTR MaLR -321 267 99 3135 180 91 31 chr3 66941763 66942597 -160581981 + L1MC4 LINE L1 7171 7995 0 682 241 101 33 chr3 66942796 66943155 -160581423 + MLT1J2 LTR MaLR 36 450 0 1491 138 42 85 chr3 66943467 66943901 -160580677 + Charlie1b DNA MER1_type 103 517 -6 213 250 19 0 chr3 66944034 66944086 -160580492 + L2 LINE L2 3261 3313 0 371 305 45 45 chr3 66944181 66944450 -160580128 + MLT1I LTR MaLR 18 286 -123 427 264 120 0 chr3 66944576 66944701 -160579877 + MLT1J2 LTR MaLR 164 303 -147 358 321 36 36 chr3 66945834 66945974 -160578604 + MIR3 SINE MIR 21 160 -48 24 0 0 0 chr3 66946297 66946321 -160578257 + AT_rich Low_complexity Low_complexity 1 24 0 198 319 66 33 chr3 66946841 66946932 -160577646 - L2 LINE L2 -12 3301 3208 24 53 0 0 chr3 66949078 66949116 -160575462 + AT_rich Low_complexity Low_complexity 1 38 0 438 238 67 31 chr3 66949144 66949284 -160575294 - MIR SINE MIR -62 146 45 22 56 0 0 chr3 66952093 66952129 -160572449 + AT_rich Low_complexity Low_complexity 1 36 0 715 290 101 4 chr3 66952188 66952426 -160572152 + MIR SINE MIR 2 262 0 440 276 188 16 chr3 66952401 66952593 -160571985 - MIR SINE MIR -19 243 19 * 653 264 152 54 chr3 66952782 66953450 -160571128 - L2 LINE L2 -24 3289 2533 231 281 62 0 chr3 66953453 66953517 -160571061 + L2 LINE L2 3245 3312 -1 2519 61 3 0 chr3 66954406 66954716 -160569862 - AluY SINE Alu 0 311 1 6750 113 20 58 chr3 66955499 66961882 -160562696 + L1PA7 LINE L1 12 6152 -2 1747 156 38 0 chr3 66962041 66962361 -160562217 + Tigger1 DNA MER2_type 1 332 -2086 26 30 0 0 chr3 66962521 66962554 -160562024 + AT_rich Low_complexity Low_complexity 1 33 0 35 41 0 0 chr3 66963453 66963502 -160561076 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr3 66963783 66963812 -160560766 + AT_rich Low_complexity Low_complexity 1 29 0 280 200 27 82 chr3 66966278 66966388 -160558190 + MIR SINE MIR 89 192 -70 358 287 66 41 chr3 66966394 66966516 -160558062 - L2 LINE L2 -7 3306 3182 216 282 70 28 chr3 66966893 66966964 -160557614 - L2 LINE L2 0 3272 3199 * 3103 269 83 21 chr3 66966933 66967943 -160556635 - L2 LINE L2 -338 2976 1904 196 167 28 0 chr3 66967950 66967986 -160556592 - L2 LINE L2 -561 2753 2717 296 274 118 10 chr3 66968393 66968495 -160556083 - L2 LINE L2 -8 3264 3152 297 51 0 0 chr3 66969481 66969520 -160555058 + (CA)n Simple_repeat Simple_repeat 2 40 0 422 206 22 0 chr3 66970370 66970462 -160554116 + MIR SINE MIR 168 261 -1 535 375 62 19 chr3 66970993 66971090 -160553488 - L2 LINE L2 -2215 1099 1008 223 47 0 47 chr3 66971090 66971133 -160553445 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 535 375 62 19 chr3 66971133 66971547 -160553031 - L2 LINE L2 -2306 1008 566 272 248 238 2 chr3 66972160 66972272 -160552306 + MIR SINE MIR 23 156 -52 491 298 11 21 chr3 66973432 66973623 -160550955 + MER5A DNA MER1_type 1 189 0 373 206 37 28 chr3 66973742 66973849 -160550729 - MER5A DNA MER1_type -19 170 63 319 228 140 79 chr3 66975005 66975253 -160549325 - MIR SINE MIR 0 262 1 3862 146 96 18 chr3 66975256 66976558 -160548020 + pTR5 LTR ERV1 828 2606 0 183 267 100 67 chr3 66976670 66976760 -160547818 - MIR SINE MIR -81 181 89 194 300 125 0 chr3 66977087 66977167 -160547411 - L2 LINE L2 -40 3232 3143 278 216 232 48 chr3 66977216 66977341 -160547237 - L2 LINE L2 -43 3270 3123 874 221 111 0 chr3 66977370 66977578 -160547000 - MLT1D LTR MaLR 0 505 275 878 244 154 28 chr3 66977579 66977943 -160546635 - MLT1D LTR MaLR -81 424 15 607 217 37 48 chr3 66979919 66980108 -160544470 + L1 LINE L1 4907 5093 -1053 230 325 0 13 chr3 66980283 66980360 -160544218 - MLT1K LTR MaLR -322 266 191 260 267 78 26 chr3 66980438 66980554 -160544024 - MLT1K LTR MaLR -450 138 17 2408 64 3 0 chr3 66980753 66981051 -160543527 - AluY SINE Alu -12 299 1 2545 165 86 25 chr3 66981350 66981864 -160542714 + MER90 LTR ERV1 70 614 0 225 132 0 0 chr3 66982274 66982312 -160542266 + (CA)n Simple_repeat Simple_repeat 1 38 0 16033 181 57 10 chr3 66983335 66985530 -160539048 - L1PB1 LINE L1 -1 6866 4776 192 40 0 0 chr3 66985530 66985555 -160539023 + (TTG)n Simple_repeat Simple_repeat 2 26 0 16033 181 57 10 chr3 66985555 66989692 -160534886 - L1PB1 LINE L1 -2091 4776 106 259 169 60 108 chr3 66991295 66991378 -160533200 + Charlie7 DNA MER1_type 6 84 -2528 * 340 261 98 7 chr3 66991377 66991530 -160533048 + Charlie7 DNA MER1_type 2440 2606 -6 2488 78 0 0 chr3 66991717 66992023 -160532555 - AluY SINE Alu -5 306 1 1835 121 30 3 chr3 66992025 66992322 -160532256 - AluSx SINE Alu -7 305 1 273 256 179 34 chr3 66992427 66992544 -160532034 - L2 LINE L2 0 3313 3180 3436 231 58 38 chr3 66992548 66993304 -160531274 - L1M4 LINE L1 -989 5157 4418 2474 91 0 0 chr3 66993304 66993612 -160530966 + AluSc SINE Alu 1 308 -1 3436 231 58 38 chr3 66993612 66993822 -160530756 - L1M4 LINE L1 -1728 4418 4214 2279 66 42 0 chr3 66993822 66994111 -160530467 - AluY SINE Alu -10 301 1 3436 231 58 38 chr3 66994111 66994477 -160530101 - L1M4 LINE L1 -1932 4214 3796 12144 107 8 29 chr3 66994533 66996583 -160527995 + L1P3 LINE L1 12 2054 -4407 298 255 75 31 chr3 66996612 66996765 -160527813 - MIR SINE MIR -66 142 3 294 328 104 24 chr3 66996790 66996915 -160527663 - L2 LINE L2 -1 3271 3137 632 293 40 40 chr3 66997256 66997509 -160527069 - MIR SINE MIR -2 260 8 2309 103 0 0 chr3 66997949 66998250 -160526328 - AluSc SINE Alu -8 301 1 2271 99 7 3 chr3 66998369 66998671 -160525907 - AluSx SINE Alu -9 303 1 685 249 54 0 chr3 66999112 66999297 -160525281 - MIR SINE MIR -9 253 59 600 303 57 55 chr3 66999968 67000335 -160524243 - LTR16C LTR ERVL -17 474 107 329 401 28 11 chr3 67000441 67000618 -160523960 + L2 LINE L2 2879 3058 -214 7972 29 8 0 chr3 67000855 67001887 -160522691 - L1PA4 LINE L1 -2306 3840 2801 12437 33 5 0 chr3 67001887 67004173 -160520405 + L1PA4 LINE L1 3855 6153 -2 1556 175 44 7 chr3 67004446 67004743 -160519835 + Tigger7 DNA MER2_type 1 308 -425 900 271 84 22 chr3 67005140 67005461 -160519117 - L2 LINE L2 -21 3292 2952 391 156 0 0 chr3 67007173 67007250 -160517328 + L1PB3 LINE L1 6076 6152 -2 581 206 20 14 chr3 67007254 67007400 -160517178 - L1MB7 LINE L1 -5 6179 6033 7286 194 39 6 chr3 67007407 67008884 -160515694 + L1M1 LINE L1 23 1548 -6017 6206 120 20 6 chr3 67008900 67008923 -160515655 + L1MA2 LINE L1 5160 5181 -1123 2521 94 19 16 chr3 67008923 67009297 -160515281 - THE1C LTR MaLR 0 375 1 6206 120 20 6 chr3 67009297 67010397 -160514181 + L1MA2 LINE L1 5181 6296 -8 5716 215 56 105 chr3 67010416 67011350 -160513228 - L1ME1 LINE L1 -135 6842 5864 2220 119 3 0 chr3 67011350 67011652 -160512926 - AluSq SINE Alu -10 303 1 5716 215 56 105 chr3 67011652 67012469 -160512109 - L1ME1 LINE L1 -1113 5864 5009 2392 87 3 0 chr3 67012469 67012767 -160511811 + AluSx SINE Alu 1 299 -13 5716 215 56 105 chr3 67012767 67013530 -160511048 - L1ME1 LINE L1 -1968 5009 4442 2367 95 7 0 chr3 67013530 67013836 -160510742 + AluSq SINE Alu 1 308 -5 5716 215 56 105 chr3 67013836 67014749 -160509829 - L1ME1 LINE L1 -2535 4442 3486 472 297 88 96 chr3 67014820 67015227 -160509351 - L1ME1 LINE L1 -5654 1201 798 407 266 70 11 chr3 67015364 67015449 -160509129 - L1ME1 LINE L1 -6362 493 414 459 0 0 0 chr3 67015449 67015500 -160509078 + (TG)n Simple_repeat Simple_repeat 2 52 0 407 266 70 11 chr3 67015500 67015634 -160508944 - L1ME1 LINE L1 -6441 414 19 244 216 11 45 chr3 67015924 67016012 -160508566 - L1ME4a LINE L1 -16 6105 6021 4512 181 56 5 chr3 67016012 67016890 -160507688 + MER49 LTR ERV1 1 923 0 325 301 29 75 chr3 67017046 67017219 -160507359 - L1ME LINE L1 -418 5703 5539 403 353 29 24 chr3 67017384 67017554 -160507024 - MIR SINE MIR -84 178 8 326 308 131 23 chr3 67017732 67017946 -160506632 + MIR SINE MIR 16 252 -10 807 174 36 0 chr3 67018163 67018330 -160506248 + L1MB7 LINE L1 5 177 -6365 269 194 0 0 chr3 67018651 67018723 -160505855 + L1MB7 LINE L1 4906 4977 -1667 363 181 0 0 chr3 67018723 67018795 -160505783 + (TA)n Simple_repeat Simple_repeat 1 72 0 2117 121 0 3 chr3 67018795 67019085 -160505493 - AluSx SINE Alu -23 289 1 22 0 0 0 chr3 67019086 67019108 -160505470 + AT_rich Low_complexity Low_complexity 1 22 0 3587 160 43 82 chr3 67019109 67019968 -160504610 + L1MB7 LINE L1 4995 5765 -917 6627 71 10 0 chr3 67019968 67021433 -160503145 - L1PA14 LINE L1 -3 6158 4687 3587 160 43 82 chr3 67021433 67022308 -160502270 + L1MB7 LINE L1 5765 6673 -9 2021 200 42 9 chr3 67022449 67022899 -160501679 + MLT1C LTR MaLR 3 467 0 235 255 0 0 chr3 67022948 67022999 -160501579 + MIR SINE MIR 104 154 -108 286 293 70 0 chr3 67023833 67023990 -160500588 + L1MC/D LINE L1 5665 5832 -1976 351 65 0 0 chr3 67024108 67024154 -160500424 + (CA)n Simple_repeat Simple_repeat 1 46 0 595 303 248 21 chr3 67025322 67025851 -160498727 + L2 LINE L2 2137 2785 -529 530 275 33 0 chr3 67025905 67026087 -160498491 - LTR33 LTR ERVL -6 515 328 369 269 39 62 chr3 67026135 67026265 -160498313 - LTR33A LTR ERVL -328 195 69 2268 132 5 28 chr3 67026369 67026756 -160497822 - L1PA16 LINE L1 -14 6152 5775 2047 131 17 161 chr3 67026756 67027289 -160497289 + LTR32 LTR ERVL 16 471 0 409 316 282 3 chr3 67027358 67027674 -160496904 + L2 LINE L2 2907 3310 -3 331 244 61 84 chr3 67028761 67028862 -160495716 + MIR SINE MIR 22 121 -141 3204 167 16 25 chr3 67028862 67029468 -160495110 + MER6A DNA MER2_type 5 605 0 331 244 61 84 chr3 67029468 67029497 -160495081 + MIR SINE MIR 121 149 -113 2094 117 0 26 chr3 67030687 67030994 -160493584 + AluSx SINE Alu 2 300 -12 698 315 31 14 chr3 67031431 67031688 -160492890 + MIR SINE MIR 3 262 0 371 228 0 0 chr3 67032157 67032236 -160492342 + MER117 DNA MER1_type 4 82 -115 14621 52 7 6 chr3 67032524 67035127 -160489451 + L1PA7 LINE L1 3549 6152 -2 1768 153 38 0 chr3 67035286 67035606 -160488972 + Tigger1 DNA MER2_type 1 332 -2086 26 30 0 0 chr3 67035766 67035799 -160488779 + AT_rich Low_complexity Low_complexity 1 33 0 1928 167 140 2 chr3 67036180 67036594 -160487984 - L1PBa LINE L1 -5096 1767 1297 22 35 0 0 chr3 67037014 67037043 -160487535 + GC_rich Low_complexity Low_complexity 1 29 0 306 267 139 22 chr3 67089008 67089188 -160435390 + L1M2 LINE L1 2621 2821 -4028 289 281 154 32 chr3 67090585 67090806 -160433772 + HAL1 LINE L1 2196 2443 -64 1553 255 77 61 chr3 67092570 67093605 -160430973 + L1MC4 LINE L1 6991 8042 0 22 0 0 0 chr3 67093996 67094018 -160430560 + AT_rich Low_complexity Low_complexity 1 22 0 2551 174 50 27 chr3 67094708 67095491 -160429087 - L1M3 LINE L1 -344 5824 5016 7027 56 3 3 chr3 67095499 67096543 -160428035 - L1PA6 LINE L1 -10 6144 5104 1496 113 47 27 chr3 67096908 67097164 -160427414 + L1PB3 LINE L1 5893 6153 -1 28 0 0 0 chr3 67097164 67097192 -160427386 + AT_rich Low_complexity Low_complexity 1 28 0 1834 273 47 14 chr3 67097436 67098124 -160426454 + HAL1 LINE L1 1423 2132 -375 9043 108 40 10 chr3 67098413 67099854 -160424724 - L1PBa LINE L1 -4268 2595 1112 559 178 28 0 chr3 67100121 67100228 -160424350 + MER34 LTR ERV1 413 522 -20 1760 132 68 4 chr3 67100228 67100508 -160424070 + AluSx SINE Alu 1 298 -14 2111 154 5 15 chr3 67100557 67100946 -160423632 + L1MB3 LINE L1 5790 6174 -9 497 260 112 18 chr3 67100946 67101169 -160423409 - L1ME3A LINE L1 -183 5987 5744 261 0 0 0 chr3 67101229 67101258 -160423320 + (TA)n Simple_repeat Simple_repeat 2 30 0 203 171 0 0 chr3 67101975 67102010 -160422568 + (TG)n Simple_repeat Simple_repeat 2 36 0 285 339 111 6 chr3 67102426 67102597 -160421981 - MIR SINE MIR -57 205 17 190 345 0 0 chr3 67103580 67103635 -160420943 + L2 LINE L2 3207 3261 -11 321 346 11 11 chr3 67103797 67103979 -160420599 - L1ME4a LINE L1 -206 5915 5734 21 0 0 0 chr3 67104601 67104622 -160419956 + AT_rich Low_complexity Low_complexity 1 21 0 583 248 132 64 chr3 67104904 67105068 -160419510 - HAL1 LINE L1 -699 1808 1657 1761 180 3 0 chr3 67105068 67105363 -160419215 - AluJo SINE Alu -16 296 1 583 248 132 64 chr3 67105363 67105493 -160419085 - HAL1 LINE L1 -850 1657 1494 398 306 101 11 chr3 67105810 67106192 -160418386 - L1M4 LINE L1 -1312 3307 883 679 160 15 8 chr3 67106206 67106337 -160418241 - AluSg1 SINE Alu -177 132 1 42 57 0 0 chr3 67106337 67106407 -160418171 + AT_rich Low_complexity Low_complexity 1 70 0 1070 140 27 0 chr3 67106425 67106611 -160417967 - L1MA4 LINE L1 -11 6289 6099 615 62 103 0 chr3 67106611 67106708 -160417870 + MER11A LTR ERVK 1 107 -1159 289 29 0 0 chr3 67106709 67106743 -160417835 + MER11A LTR ERVK 1233 1266 0 3565 140 54 5 chr3 67106743 67107358 -160417220 - L1MA4 LINE L1 -196 6104 5460 1739 89 8 0 chr3 67107363 67107611 -160416967 - L1MA3 LINE L1 -10 6295 6046 2916 13 0 0 chr3 67107624 67107942 -160416636 - AluYb8 SINE Alu 0 318 1 599 83 21 90 chr3 67108590 67108734 -160415844 + L1MA10 LINE L1 6199 6332 -2 1076 283 42 73 chr3 67108736 67109573 -160415005 + L1MEc LINE L1 1634 2444 -3952 1173 259 78 54 chr3 67109940 67110404 -160414174 - MER21B LTR ERV1 -69 794 320 1360 223 167 35 chr3 67111196 67111627 -160412951 - MLT1D LTR MaLR -17 488 1 225 0 0 0 chr3 67112314 67112339 -160412239 + (A)n Simple_repeat Simple_repeat 1 25 0 2218 82 7 30 chr3 67112522 67112827 -160411751 - AluY SINE Alu -13 298 1 319 265 102 42 chr3 67114816 67114973 -160409605 + L2 LINE L2 3133 3302 -11 180 111 0 0 chr3 67114973 67115000 -160409578 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 2384 111 28 22 chr3 67115225 67115585 -160408993 + THE1B LTR MaLR 3 364 0 4092 82 71 0 chr3 67115585 67116161 -160408417 + THE1B-int LTR MaLR 1 617 -963 9640 138 25 12 chr3 67116261 67118572 -160406006 - L1MA2 LINE L1 -451 5853 3510 360 257 71 0 chr3 67118823 67118936 -160405642 + MER41A-int LTR ERV1 4106 4226 -1720 * 1019 50 29 7 chr3 67118935 67119074 -160405504 + MER41A-int LTR ERV1 2661 2802 -3461 * 4947 88 8 1 chr3 67119068 67119730 -160404848 + MER41A-int LTR ERV1 5279 5944 -2 3513 74 15 0 chr3 67119730 67120190 -160404388 + MER41A LTR ERV1 1 467 -87 180 0 0 0 chr3 67120191 67120211 -160404367 + (A)n Simple_repeat Simple_repeat 1 20 0 1205 207 16 115 chr3 67120804 67121186 -160403392 - MLT1A1 LTR MaLR -19 346 3 1181 201 74 13 chr3 67121215 67121513 -160403065 - MER33 DNA MER1_type -8 316 1 227 320 94 16 chr3 67121548 67121676 -160402902 - L3b LINE CR1 -131 1452 1315 553 354 115 33 chr3 67121678 67122447 -160402131 - L2 LINE L2 -6 3266 2423 264 298 167 9 chr3 67122875 67122989 -160401589 - L2 LINE L2 -261 3052 2921 397 224 164 50 chr3 67124578 67124797 -160399781 - L1MC4a LINE L1 -1642 6166 5923 322 243 126 10 chr3 67124889 67124992 -160399586 - MIR SINE MIR -95 167 53 317 49 0 0 chr3 67125034 67125075 -160399503 + MADE1 DNA Mariner 32 72 -8 1005 196 11 78 chr3 67126441 67126712 -160397866 + L1MC2 LINE L1 5932 6184 -160 21 82 0 0 chr3 67126922 67126971 -160397607 + AT_rich Low_complexity Low_complexity 1 49 0 408 289 1 0 chr3 67128179 67128293 -160396285 + L1ME LINE L1 5528 5635 -535 393 102 0 0 chr3 67128933 67128992 -160395586 + (CA)n Simple_repeat Simple_repeat 2 60 0 2848 3 0 10 chr3 67129313 67129627 -160394951 + AluYa5 SINE Alu 1 311 0 578 328 159 10 chr3 67129723 67130025 -160394553 - HAL1 LINE L1 -1741 766 420 380 291 50 7 chr3 67131009 67131150 -160393428 - MLT1I LTR MaLR 0 409 263 214 49 24 24 chr3 67131193 67131234 -160393344 + (TTTTG)n Simple_repeat Simple_repeat 5 45 0 799 69 0 0 chr3 67131731 67131832 -160392746 + THE1A LTR MaLR 225 325 -30 3613 195 81 8 chr3 67131832 67132757 -160391821 + L1M4 LINE L1 4428 5418 -743 294 281 62 21 chr3 67133028 67133124 -160391454 - L2 LINE L2 -5 3308 3209 244 291 45 4 chr3 67133138 67133277 -160391301 - MIR SINE MIR -6 256 63 2309 105 0 0 chr3 67133378 67133674 -160390904 - AluSx SINE Alu -16 296 1 2392 55 3 3 chr3 67133788 67134080 -160390498 - AluY SINE Alu -19 292 1 24 0 0 0 chr3 67134150 67134174 -160390404 + AT_rich Low_complexity Low_complexity 1 24 0 471 235 0 61 chr3 67135656 67135771 -160388807 + Tigger3(Golem) DNA MER2_type 1 108 -2921 626 128 86 0 chr3 67135771 67135888 -160388690 + Tigger3(Golem) DNA MER2_type 2284 2410 -619 190 289 105 40 chr3 67136328 67136404 -160388174 - L2 LINE L2 -24 3248 3168 569 237 48 2 chr3 67136435 67136583 -160387995 - MIR SINE MIR -66 142 38 1511 224 0 3 chr3 67136681 67136976 -160387602 + AluJb SINE Alu 11 304 -8 1992 211 42 20 chr3 67137396 67137890 -160386688 - MLT1D LTR MaLR 0 505 1 520 281 110 23 chr3 67138162 67138382 -160386196 + MIR SINE MIR 5 256 -6 205 176 0 98 chr3 67138817 67138868 -160385710 - L2 LINE L2 -95 3218 3173 212 196 0 22 chr3 67139161 67139207 -160385371 + GA-rich Low_complexity Low_complexity 4 48 0 291 20 0 59 chr3 67139210 67139261 -160385317 + (GGAA)n Simple_repeat Simple_repeat 2 49 0 976 245 88 0 chr3 67139525 67139786 -160384792 + MER63B DNA MER1_type 1 284 -152 2281 194 25 6 chr3 67139892 67140422 -160384156 - L1 LINE L1 -2911 3235 2696 1416 102 4 37 chr3 67140438 67140672 -160383906 - L1M1 LINE L1 -743 5403 5266 2274 113 0 3 chr3 67140672 67140981 -160383597 - AluSg SINE Alu -2 308 1 1416 102 4 37 chr3 67140981 67141090 -160383488 - L1M1 LINE L1 -880 5266 5155 * 2857 192 67 7 chr3 67141079 67141693 -160382885 - L1MB3 LINE L1 -47 6136 5486 926 150 0 0 chr3 67141824 67141957 -160382621 + AluJ SINE Alu 1 133 -169 192 40 0 0 chr3 67142364 67142389 -160382189 + (GA)n Simple_repeat Simple_repeat 2 26 0 725 265 25 54 chr3 67142776 67143168 -160381410 - MLT1I LTR MaLR -18 391 18 205 300 77 46 chr3 67143181 67143311 -160381267 - MIR SINE MIR -96 166 33 207 338 0 0 chr3 67143746 67143814 -160380764 - L2 LINE L2 -12 3260 3193 461 275 94 0 chr3 67143972 67144110 -160380468 - MIR SINE MIR -49 213 63 1140 284 108 49 chr3 67144131 67144847 -160379731 - L2 LINE L2 0 3313 2563 947 175 17 6 chr3 67144868 67145045 -160379533 + AluJ SINE Alu 134 312 0 2074 205 29 51 chr3 67145075 67145588 -160378990 - LTR40a LTR ERVL -15 504 3 281 207 183 0 chr3 67145591 67145673 -160378905 - L2 LINE L2 -747 2567 2471 2211 147 57 8 chr3 67145678 67146065 -160378513 - MSTB1 LTR MaLR -26 406 1 197 241 43 78 chr3 67146113 67146229 -160378349 + L3 LINE CR1 343 454 -1123 24 0 0 0 chr3 67146470 67146494 -160378084 + AT_rich Low_complexity Low_complexity 1 24 0 481 252 60 33 chr3 67146570 67146721 -160377857 + L2 LINE L2 3159 3313 0 301 260 116 44 chr3 67146846 67147027 -160377551 - L1ME LINE L1 -369 5752 5559 1753 117 26 15 chr3 67147717 67147990 -160376588 - AluSc SINE Alu -30 279 4 204 40 0 0 chr3 67150147 67150172 -160374406 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 213 94 0 0 chr3 67150247 67150279 -160374299 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 575 289 52 52 chr3 67150284 67150338 -160374240 - L2 LINE L2 -165 3148 3095 2287 77 56 0 chr3 67150338 67150625 -160373953 + AluSc SINE Alu 1 303 -6 575 289 52 52 chr3 67150625 67150861 -160373717 - L2 LINE L2 -217 3096 2858 2227 194 40 0 chr3 67150861 67151263 -160373315 + MSTB2 LTR MaLR 1 418 -39 663 39 0 0 chr3 67151264 67151377 -160373201 + AluSp/q SINE Alu 210 322 0 340 106 0 0 chr3 67151382 67151429 -160373149 + MSTB2 LTR MaLR 411 457 0 412 311 45 0 chr3 67151431 67151563 -160373015 - L2 LINE L2 -455 2859 2722 564 294 60 11 chr3 67151570 67151754 -160372824 - L2 LINE L2 -816 2498 2306 2713 241 73 87 chr3 67151773 67152005 -160372573 + L1MC5 LINE L1 5696 5930 -2031 2103 177 18 18 chr3 67152005 67152400 -160372178 + MSTD LTR MaLR 2 396 0 2713 241 73 87 chr3 67152400 67152427 -160372151 + L1MC5 LINE L1 5930 5956 -2005 2228 123 0 3 chr3 67152427 67152737 -160371841 + AluSg SINE Alu 1 309 -1 2713 241 73 87 chr3 67152737 67153836 -160370742 + L1MC5 LINE L1 5956 7032 -929 2171 130 3 0 chr3 67153836 67154143 -160370435 - AluSx SINE Alu -4 308 1 2713 241 73 87 chr3 67154143 67154761 -160369817 + L1MC5 LINE L1 7032 7657 -304 590 268 140 13 chr3 67154764 67154992 -160369586 + L1MC4 LINE L1 6730 6986 -1056 2540 54 0 0 chr3 67155952 67156248 -160368330 - AluY SINE Alu 0 311 16 320 194 97 32 chr3 67156269 67156362 -160368216 + MLT1I LTR MaLR 60 158 -251 190 293 0 0 chr3 67156736 67156777 -160367801 - L2 LINE L2 -1 3271 3231 1013 224 35 47 chr3 67156841 67157158 -160367420 + MLT1A2 LTR MaLR 1 313 -61 305 188 12 0 chr3 67157708 67157788 -160366790 + (TA)n Simple_repeat Simple_repeat 1 81 0 763 258 43 12 chr3 67158096 67158418 -160366160 - L1MEc LINE L1 -4008 3114 2783 596 319 64 23 chr3 67158527 67158919 -160365659 - L1MEc LINE L1 -4887 1536 1129 1641 191 3 3 chr3 67159199 67159513 -160365065 - L1MB5 LINE L1 -6 6168 5855 587 313 74 27 chr3 67159636 67160042 -160364536 - L1MEc LINE L1 -5960 463 39 32 57 0 0 chr3 67160049 67160102 -160364476 + AT_rich Low_complexity Low_complexity 1 53 0 1801 185 11 6 chr3 67160163 67160668 -160363910 - L1M3 LINE L1 -715 5701 5196 1871 201 31 11 chr3 67160674 67161127 -160363451 - L1M3 LINE L1 -1379 5003 4542 5221 231 70 25 chr3 67161131 67162771 -160361807 - L1M3 LINE L1 -3345 3037 1331 1270 172 10 82 chr3 67162777 67163068 -160361510 - AluJo SINE Alu -9 303 34 326 233 0 0 chr3 67163086 67163146 -160361432 - AluJ/FLAM SINE Alu -242 60 1 6786 166 23 19 chr3 67163146 67164442 -160360136 - L1M3 LINE L1 -5040 1344 43 2331 102 0 3 chr3 67166085 67166399 -160358179 - AluSq SINE Alu 0 313 1 500 242 46 13 chr3 67166564 67166717 -160357861 + L1ME4a LINE L1 5964 6121 0 2023 118 3 33 chr3 67167491 67167796 -160356782 + AluSx SINE Alu 1 296 -16 1130 145 6 0 chr3 67167796 67167968 -160356610 + AluSg/x SINE Alu 132 304 -6 313 87 96 0 chr3 67167969 67168084 -160356494 + (TA)n Simple_repeat Simple_repeat 1 126 0 * 442 89 76 13 chr3 67168079 67168237 -160356341 + (TATAA)n Simple_repeat Simple_repeat 5 172 0 382 107 107 0 chr3 67168247 67168406 -160356172 + (TA)n Simple_repeat Simple_repeat 1 176 0 26 0 0 0 chr3 67169112 67169138 -160355440 + AT_rich Low_complexity Low_complexity 1 26 0 278 191 0 103 chr3 67169266 67169334 -160355244 + MER21B LTR ERV1 1 61 -802 743 118 7 7 chr3 67169487 67169622 -160354956 + L1 LINE L1 5195 5329 -817 218 81 27 0 chr3 67169622 67169659 -160354919 + (TA)n Simple_repeat Simple_repeat 2 39 0 255 177 326 14 chr3 67169659 67169800 -160354778 + ORSL DNA AcHobo 89 273 -2 196 286 82 0 chr3 67169809 67169858 -160354720 - MIR SINE MIR -196 66 14 1002 176 30 121 chr3 67170377 67170744 -160353834 - MER33 DNA MER1_type 0 324 1 1321 171 6 111 chr3 67170800 67171115 -160353463 + AluJo SINE Alu 1 282 -30 1882 130 38 14 chr3 67171756 67172049 -160352529 - AluSx SINE Alu -7 305 6 2251 91 3 7 chr3 67172474 67172771 -160351807 - AluSx SINE Alu -16 296 1 286 341 0 11 chr3 67174552 67174640 -160349938 + L2 LINE L2 3186 3272 0 377 150 0 0 chr3 67174704 67174764 -160349814 + L3 LINE CR1 436 495 -1082 1851 150 29 32 chr3 67175210 67175523 -160349055 + AluJb SINE Alu 1 312 0 11440 201 131 11 chr3 67175665 67178465 -160346113 - L1PBa LINE L1 -3684 3178 33 410 289 0 10 chr3 67178603 67178707 -160345871 - L2 LINE L2 -3 3310 3208 1202 199 39 0 chr3 67178913 67179228 -160345350 + MER33 DNA MER1_type 1 319 -5 232 299 0 0 chr3 67179332 67179409 -160345169 + MER103 DNA DNA 72 148 -18 2222 88 10 3 chr3 67180923 67181219 -160343359 + AluSg SINE Alu 1 298 -12 2427 65 0 7 chr3 67181565 67181873 -160342705 - AluY SINE Alu -5 306 1 24 77 0 0 chr3 67181890 67181942 -160342636 + AT_rich Low_complexity Low_complexity 1 52 0 646 272 51 12 chr3 67181942 67182196 -160342382 - L1ME LINE L1 -305 5816 5553 31 26 0 0 chr3 67182383 67182421 -160342157 + AT_rich Low_complexity Low_complexity 1 38 0 882 357 72 30 chr3 67182959 67183202 -160341376 + L2 LINE L2 2334 2565 -748 2087 122 10 0 chr3 67183202 67183497 -160341081 - AluSx SINE Alu -14 298 1 882 357 72 30 chr3 67183497 67183971 -160340607 + L2 LINE L2 2565 3086 -227 1049 232 160 29 chr3 67184019 67184325 -160340253 - MLT1C LTR MaLR 0 467 160 489 104 0 0 chr3 67184325 67184402 -160340176 + L1MA5 LINE L1 6224 6300 0 634 210 62 12 chr3 67184778 67184940 -160339638 - MLT1C LTR MaLR -335 170 1 32 43 0 0 chr3 67184973 67185019 -160339559 + AT_rich Low_complexity Low_complexity 1 46 0 1529 161 32 35 chr3 67185046 67185377 -160339201 - MER33 DNA MER1_type 0 324 1 21 36 0 0 chr3 67186041 67186069 -160338509 + AT_rich Low_complexity Low_complexity 1 28 0 780 167 0 0 chr3 67187220 67187346 -160337232 - FLAM_C SINE Alu -5 128 3 314 224 48 36 chr3 67187794 67187959 -160336619 + (TATAA)n Simple_repeat Simple_repeat 2 168 0 2111 112 0 3 chr3 67188373 67188659 -160335919 - AluSc SINE Alu -24 285 1 449 294 0 0 chr3 67188660 67188762 -160335816 - MLT1H LTR MaLR -447 102 1 444 304 65 24 chr3 67188792 67188960 -160335618 - MIR SINE MIR -78 184 10 1358 244 50 11 chr3 67189840 67190200 -160334378 - MLT1A2 LTR MaLR 0 374 1 462 298 62 43 chr3 67190238 67190446 -160334132 + L2 LINE L2 2727 2938 -376 222 280 4 134 chr3 67190446 67190584 -160333994 + L2 LINE L2 3044 3142 -171 2187 125 0 0 chr3 67190584 67190888 -160333690 - AluSg SINE Alu -6 304 1 222 280 4 134 chr3 67190888 67190981 -160333597 + L2 LINE L2 3142 3245 -68 491 320 115 8 chr3 67193407 67193651 -160330927 + L3 LINE CR1 1230 1499 -78 6653 120 9 14 chr3 67194092 67195097 -160329481 + THE1B-int LTR MaLR 581 1580 0 2432 124 8 6 chr3 67195097 67195460 -160329118 + THE1B LTR MaLR 1 364 0 480 197 7 102 chr3 67195740 67195831 -160328747 + L2 LINE L2 3186 3261 -52 2366 85 0 7 chr3 67195831 67196136 -160328442 + AluY SINE Alu 3 305 -6 480 197 7 102 chr3 67196136 67196181 -160328397 + L2 LINE L2 3261 3309 -4 347 270 97 68 chr3 67196239 67196576 -160328002 + L1M4 LINE L1 2748 3097 -3049 518 300 130 19 chr3 67196631 67197363 -160327215 + L1M4 LINE L1 3514 4324 -1822 450 349 58 15 chr3 67197370 67197697 -160326881 + L1M4 LINE L1 4495 4835 -1311 186 43 0 0 chr3 67197725 67197748 -160326830 + (CA)n Simple_repeat Simple_repeat 2 24 0 29584 96 6 10 chr3 67197989 67202278 -160322300 + L1P LINE L1 228 4502 -1644 1331 323 120 33 chr3 67202978 67204071 -160320507 - L2 LINE L2 -3 3310 2076 282 289 52 21 chr3 67204072 67204169 -160320409 - MER102b DNA MER1_type -46 295 196 259 196 0 0 chr3 67204171 67204217 -160320361 - MER96B DNA MER1_type? -182 235 190 235 143 104 13 chr3 67204476 67204553 -160320025 - MER96B DNA MER1_type? -246 171 88 922 189 7 0 chr3 67204563 67204716 -160319862 - FRAM SINE Alu -30 146 1 308 302 23 0 chr3 67204728 67204814 -160319764 - MER96B DNA MER1_type? -329 88 1 * 335 246 56 32 chr3 67204814 67204939 -160319639 - MER102b DNA MER1_type -169 172 45 1407 176 58 18 chr3 67205192 67205470 -160319108 - AluJb SINE Alu -23 289 1 246 32 0 0 chr3 67206038 67206069 -160318509 + (CA)n Simple_repeat Simple_repeat 1 31 0 1885 112 60 0 chr3 67206331 67206599 -160317979 + AluSx SINE Alu 1 284 -28 327 25 0 0 chr3 67206599 67206639 -160317939 + (CA)n Simple_repeat Simple_repeat 2 41 0 181 205 0 0 chr3 67206696 67206735 -160317843 + L2 LINE L2 3273 3311 -2 977 277 30 67 chr3 67207227 67207394 -160317184 + MLT1F LTR MaLR 5 176 -366 183 42 0 0 chr3 67207394 67207418 -160317160 + (TC)n Simple_repeat Simple_repeat 1 24 0 977 277 30 67 chr3 67207418 67207611 -160316967 + MLT1F LTR MaLR 176 352 -190 511 180 20 0 chr3 67207618 67207718 -160316860 + MLT1F LTR MaLR 464 565 -2 397 320 152 55 chr3 67207719 67208159 -160316419 + LTR67 LTR ERVL 75 557 0 286 234 117 11 chr3 67209050 67209144 -160315434 + L3 LINE CR1 1467 1570 -7 37 39 0 0 chr3 67209433 67209484 -160315094 + AT_rich Low_complexity Low_complexity 1 51 0 434 314 98 45 chr3 67209486 67209823 -160314755 + L2 LINE L2 2519 2873 -441 3165 144 38 16 chr3 67209846 67210451 -160314127 - L1MB7 LINE L1 -304 5880 5263 789 190 117 6 chr3 67210453 67210616 -160313962 + L1PA16 LINE L1 5962 6142 -24 21 0 0 0 chr3 67210618 67210639 -160313939 + AT_rich Low_complexity Low_complexity 1 21 0 2869 198 30 14 chr3 67210689 67211325 -160313253 - L1MB7 LINE L1 -878 5268 4623 180 0 0 0 chr3 67211341 67211361 -160313217 + (TA)n Simple_repeat Simple_repeat 2 21 0 2075 128 3 0 chr3 67211643 67211931 -160312647 - AluSg SINE Alu -21 289 1 1658 168 153 6 chr3 67211934 67212111 -160312467 - L1MB7 LINE L1 -1541 4605 4455 2000 143 10 3 chr3 67212111 67212405 -160312173 - AluSx SINE Alu -16 296 1 1658 168 153 6 chr3 67212405 67212698 -160311880 - L1MB7 LINE L1 -1691 4455 4066 457 302 122 31 chr3 67212823 67213078 -160311500 + L2 LINE L2 3036 3313 0 349 291 73 22 chr3 67213103 67213282 -160311296 - MARNA DNA Mariner -17 569 382 451 117 0 39 chr3 67214333 67214410 -160310168 - AluSg/x SINE Alu -22 290 217 1193 113 13 0 chr3 67214410 67214569 -160310009 + AluSq SINE Alu 47 207 -106 319 304 109 0 chr3 67215202 67215294 -160309284 + MER91A DNA MER1_type 90 191 -5 321 305 148 39 chr3 67216453 67216810 -160307768 + MLT1K LTR MaLR 131 526 -62 2157 95 3 17 chr3 67217795 67218089 -160306489 - AluSc SINE Alu -17 292 3 1743 97 139 15 chr3 67218916 67219183 -160305395 + AluSx SINE Alu 1 300 -12 181 283 0 50 chr3 67219561 67219621 -160304957 + L2 LINE L2 1912 1968 -1346 3912 200 62 51 chr3 67219844 67220738 -160303840 - L1MD3 LINE L1 -8 7987 7076 1769 183 0 0 chr3 67220738 67221023 -160303555 - AluJo SINE Alu -21 291 7 3912 200 62 51 chr3 67221023 67221235 -160303343 - L1MD3 LINE L1 -919 7076 6868 326 365 121 8 chr3 67221323 67221572 -160303006 + L2 LINE L2 680 956 -2358 1284 361 92 60 chr3 67221687 67223129 -160301449 + L2 LINE L2 1375 2862 -452 21 0 0 0 chr3 67223156 67223177 -160301401 + AT_rich Low_complexity Low_complexity 1 21 0 218 81 27 0 chr3 67224088 67224125 -160300453 + (CA)n Simple_repeat Simple_repeat 2 39 0 181 292 56 14 chr3 67224951 67225023 -160299555 + L3b LINE CR1 1138 1212 -371 328 282 63 70 chr3 67225141 67225283 -160299295 - L2 LINE L2 -1 3312 3172 1025 105 20 0 chr3 67225296 67225448 -160299130 + MER41A LTR ERV1 400 554 0 1217 105 47 11 chr3 67225523 67225713 -160298865 + MER41A-int LTR ERV1 3 199 -7557 2325 72 19 3 chr3 67225713 67226034 -160298544 - L1PA8 LINE L1 -2 6170 5845 16033 135 9 25 chr3 67226138 67229289 -160295289 - L1P3 LINE L1 -2743 3718 584 9564 119 48 35 chr3 67229408 67230647 -160293931 + MER57-int LTR ERV1 2721 3988 -3549 2078 107 3 25 chr3 67230647 67230965 -160293613 - AluY SINE Alu 0 311 1 9564 119 48 35 chr3 67230965 67231409 -160293169 + MER57-int LTR ERV1 3988 4425 -3112 2215 231 75 65 chr3 67231574 67232337 -160292241 - L1ME1 LINE L1 -10 6156 5387 1627 157 38 101 chr3 67232777 67233204 -160291374 - MLT2D LTR ERVL -12 402 3 242 286 0 0 chr3 67233217 67233280 -160291298 + L1MC4a LINE L1 4740 4802 -1344 983 264 37 0 chr3 67233314 67233530 -160291048 + MER58A DNA MER1_type 1 224 0 1189 261 63 64 chr3 67233543 67234616 -160289962 + L1MC4a LINE L1 4877 5340 -806 186 235 0 0 chr3 67234834 67234868 -160289710 + MIR SINE MIR 217 250 -12 330 26 0 0 chr3 67235183 67235222 -160289356 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 249 264 0 0 chr3 67235245 67235317 -160289261 + GA-rich Low_complexity Low_complexity 4 75 0 14402 134 11 5 chr3 67235680 67237133 -160287445 + Tigger1 DNA MER2_type 168 1640 -778 1690 125 76 60 chr3 67237133 67237305 -160287273 + THE1C LTR MaLR 1 169 -206 2192 121 3 0 chr3 67237305 67237602 -160286976 + AluSx SINE Alu 1 298 -14 1690 125 76 60 chr3 67237602 67237798 -160286780 + THE1C LTR MaLR 169 375 0 14402 134 11 5 chr3 67237798 67238582 -160285996 + Tigger1 DNA MER2_type 1640 2418 0 45 45 0 0 chr3 67239383 67239449 -160285129 + AT_rich Low_complexity Low_complexity 1 66 0 190 154 49 16 chr3 67239449 67239572 -160285006 + (TA)n Simple_repeat Simple_repeat 2 128 0 77 38 0 0 chr3 67239572 67239677 -160284901 + AT_rich Low_complexity Low_complexity 1 105 0 1491 129 5 0 chr3 67239677 67239887 -160284691 - AluSg/x SINE Alu -23 289 79 308 313 89 45 chr3 67241463 67241573 -160283005 - MIR SINE MIR -21 241 137 2798 6 0 13 chr3 67241573 67241888 -160282690 + AluY SINE Alu 1 311 0 308 313 89 45 chr3 67241888 67242001 -160282577 - MIR SINE MIR -125 137 8 672 289 29 5 chr3 67242011 67242215 -160282363 + MIR SINE MIR 51 259 -3 1126 174 61 15 chr3 67243267 67243463 -160281115 + AluJb SINE Alu 74 278 -34 342 173 0 0 chr3 67243463 67243538 -160281040 + GA-rich Low_complexity Low_complexity 4 78 0 756 260 71 64 chr3 67243539 67244243 -160280335 + L1MDa LINE L1 1266 1974 -4566 2195 106 17 0 chr3 67244596 67244888 -160279690 + AluSq SINE Alu 1 297 -16 6665 139 19 7 chr3 67244904 67246495 -160278083 + L1MA3 LINE L1 4691 6305 0 37 23 0 0 chr3 67246495 67246539 -160278039 + AT_rich Low_complexity Low_complexity 1 44 0 1773 231 7 16 chr3 67246595 67247032 -160277546 - L1M4 LINE L1 -1814 4332 3900 21 36 0 0 chr3 67247939 67247967 -160276611 + AT_rich Low_complexity Low_complexity 1 28 0 728 264 33 33 chr3 67248093 67248440 -160276138 + L1MDa LINE L1 3481 3830 -2710 2174 94 10 10 chr3 67248440 67248737 -160275841 + AluSg SINE Alu 1 297 -13 728 264 33 33 chr3 67248737 67248786 -160275792 + L1MDa LINE L1 3829 3877 -2663 595 270 57 20 chr3 67248837 67249085 -160275493 + L1MDa LINE L1 4050 4306 -2234 882 282 47 54 chr3 67249093 67249686 -160274892 + L1M4 LINE L1 4744 5332 -814 195 254 143 0 chr3 67350463 67350526 -160174052 + L2 LINE L2 2676 2747 -567 1587 162 34 8 chr3 67350831 67351097 -160173481 + AluSq SINE Alu 25 297 -16 2438 158 78 99 chr3 67351122 67351627 -160172951 - Tigger3(Golem) DNA MER2_type 0 3028 2543 1789 179 3 0 chr3 67351627 67351912 -160172666 - AluSx SINE Alu -24 288 3 2438 158 78 99 chr3 67351912 67352166 -160172412 - Tigger3(Golem) DNA MER2_type -485 2543 2285 393 289 10 0 chr3 67352162 67352266 -160172312 - Tigger3(Golem) DNA MER2_type -2924 105 1 * 767 165 13 155 chr3 67352934 67353124 -160171454 - Charlie5 DNA MER1_type -1 2623 2490 643 269 19 0 chr3 67353124 67353284 -160171294 - FAM SINE Alu -12 163 1 767 165 13 155 chr3 67353284 67353396 -160171182 - Charlie5 DNA MER1_type -134 2490 2364 418 227 45 0 chr3 67353419 67353529 -160171049 - LTR51 LTR ERV1 0 671 557 2020 235 64 49 chr3 67353774 67354765 -160169813 + L1M4 LINE L1 2341 3345 -2801 903 219 11 48 chr3 67354887 67355157 -160169421 - AluJb SINE Alu -52 260 1 1544 188 16 44 chr3 67357210 67357530 -160167048 - AluJb SINE Alu -1 311 1 186 246 0 0 chr3 67358094 67358155 -160166423 + GA-rich Low_complexity Low_complexity 2 62 0 524 214 8 39 chr3 67358168 67358505 -160166073 + GA-rich Low_complexity Low_complexity 1 326 0 564 95 0 0 chr3 67358562 67358646 -160165932 + (GGAA)n Simple_repeat Simple_repeat 3 86 0 303 280 0 0 chr3 67358660 67358792 -160165786 + GA-rich Low_complexity Low_complexity 2 133 0 805 193 9 0 chr3 67358812 67359038 -160165540 + GA-rich Low_complexity Low_complexity 1 228 0 1356 198 8 12 chr3 67360370 67360627 -160163951 - AluSg SINE Alu -7 303 48 883 251 65 39 chr3 67360850 67361236 -160163342 + MER39 LTR ERV1 312 707 0 796 195 7 175 chr3 67361353 67361547 -160163031 - MLT1A1 LTR MaLR 0 365 288 418 103 11 103 chr3 67361547 67361596 -160162982 - MADE1 DNA Mariner 0 80 41 2194 98 0 44 chr3 67361596 67361913 -160162665 + AluY SINE Alu 1 303 -8 418 103 11 103 chr3 67361913 67361950 -160162628 - MADE1 DNA Mariner -39 41 2 796 195 7 175 chr3 67361950 67362190 -160162388 - MLT1A1 LTR MaLR -77 288 9 3453 181 12 12 chr3 67362292 67362743 -160161835 + L1MB2 LINE L1 5449 5902 -269 1767 136 55 0 chr3 67362743 67363015 -160161563 - AluSx SINE Alu -25 287 1 3453 181 12 12 chr3 67363015 67363255 -160161323 + L1MB2 LINE L1 5901 6140 -31 2177 213 38 4 chr3 67363773 67364247 -160160331 - LTR51 LTR ERV1 -181 490 1 1075 255 78 44 chr3 67364746 67365205 -160159373 - MLT1D LTR MaLR -2 503 29 223 159 0 48 chr3 67366030 67366044 -160158534 + A-rich Low_complexity Low_complexity 4 17 -46 731 136 72 16 chr3 67366044 67366169 -160158409 + FLAM_C SINE Alu 1 132 -1 223 159 0 48 chr3 67366169 67366200 -160158378 + A-rich Low_complexity Low_complexity 17 48 -15 1883 176 3 0 chr3 67366200 67366490 -160158088 + AluSx SINE Alu 1 291 -21 223 159 0 48 chr3 67366490 67366506 -160158072 + A-rich Low_complexity Low_complexity 48 63 0 322 277 34 8 chr3 67367284 67367403 -160157175 + MER20B DNA MER1_type 343 464 -319 442 15 0 45 chr3 67367873 67367940 -160156638 + L1PA2 LINE L1 6092 6155 0 2450 47 7 0 chr3 67367949 67368246 -160156332 + AluY SINE Alu 1 299 -12 1699 195 26 0 chr3 67368373 67368675 -160155903 + AluJo SINE Alu 1 310 -2 941 263 60 60 chr3 67369358 67369663 -160154915 + MER21B LTR ERV1 257 564 -299 1934 157 3 3 chr3 67369663 67369962 -160154616 - AluSx SINE Alu -13 299 1 941 263 60 60 chr3 67369962 67370135 -160154443 + MER21B LTR ERV1 563 735 -128 225 0 0 0 chr3 67370218 67370243 -160154335 + (A)n Simple_repeat Simple_repeat 1 25 0 284 200 44 67 chr3 67372377 67372467 -160152111 - AluJo SINE Alu -128 174 87 608 232 41 23 chr3 67372524 67372744 -160151834 + MER20B DNA MER1_type 537 760 -23 1296 177 0 102 chr3 67372753 67373058 -160151520 + AluJo SINE Alu 12 285 -27 288 0 0 0 chr3 67373217 67373249 -160151329 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 25 0 0 0 chr3 67375243 67375268 -160149310 + AT_rich Low_complexity Low_complexity 1 25 0 492 263 0 0 chr3 67377323 67377441 -160147137 + AluSq/x SINE Alu 19 136 -177 1318 207 88 21 chr3 67378177 67378597 -160145981 - MLT1C LTR MaLR 0 467 20 225 0 0 0 chr3 67379015 67379040 -160145538 + (T)n Simple_repeat Simple_repeat 1 25 0 29 0 0 0 chr3 67379894 67379923 -160144655 + AT_rich Low_complexity Low_complexity 1 29 0 1480 207 18 0 chr3 67379923 67380198 -160144380 - AluJo SINE Alu -30 282 3 1836 163 0 10 chr3 67380344 67380639 -160143939 - AluY SINE Alu -11 300 9 229 333 40 0 chr3 67381038 67381113 -160143465 - L2 LINE L2 -61 3252 3175 246 382 0 36 chr3 67381521 67381631 -160142947 - L2 LINE L2 -11 3302 3197 708 169 8 24 chr3 67381641 67381889 -160142689 + (ATGGTG)n Simple_repeat Simple_repeat 1 243 0 1258 225 91 0 chr3 67382332 67382445 -160142133 + AluJo SINE Alu 9 110 -202 312 27 0 0 chr3 67382445 67382482 -160142096 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1258 225 91 0 chr3 67382482 67382644 -160141934 + AluJo SINE Alu 110 309 -3 552 183 11 43 chr3 67382649 67382835 -160141743 + GA-rich Low_complexity Low_complexity 1 180 0 311 202 71 125 chr3 67384160 67384328 -160140250 + HAL1 LINE L1 2347 2505 -2 210 274 113 0 chr3 67384359 67384421 -160140157 + L2 LINE L2 2679 2747 -567 314 328 25 16 chr3 67385131 67385253 -160139325 + MER5A DNA MER1_type 61 183 -6 460 291 57 48 chr3 67385300 67385510 -160139068 - L3 LINE CR1 -87 1490 1279 257 235 25 12 chr3 67385524 67385605 -160138973 + (TA)n Simple_repeat Simple_repeat 2 83 0 190 154 45 27 chr3 67385679 67385789 -160138789 + (TA)n Simple_repeat Simple_repeat 1 112 0 242 186 6 58 chr3 67385844 67386000 -160138578 + (TA)n Simple_repeat Simple_repeat 1 148 0 225 109 87 11 chr3 67386044 67386136 -160138442 + (CTATA)n Simple_repeat Simple_repeat 2 100 0 317 152 38 89 chr3 67386139 67386297 -160138281 + (CATATA)n Simple_repeat Simple_repeat 3 152 0 523 165 24 0 chr3 67386428 67386513 -160138065 - AluJ/FLAM SINE Alu -217 95 9 25 0 0 0 chr3 67386850 67386875 -160137703 + AT_rich Low_complexity Low_complexity 1 25 0 15760 127 9 67 chr3 67387325 67394309 -160130269 - L1PA7 LINE L1 -1 6468 1 521 233 8 8 chr3 67395211 67395331 -160129247 - FLAM_C SINE Alu -20 123 4 879 208 0 12 chr3 67395331 67395504 -160129074 + AluJo/FRAM SINE Alu 137 307 -5 378 328 37 26 chr3 67396167 67396356 -160128222 + MER21B LTR ERV1 1 191 -672 1287 159 24 5 chr3 67396356 67396564 -160128014 + AluSq SINE Alu 1 212 -101 721 223 0 122 chr3 67396752 67396770 -160127808 + AluJo SINE Alu 5 24 -288 2073 128 7 0 chr3 67396770 67397067 -160127511 - AluY SINE Alu -12 299 1 721 223 0 122 chr3 67397067 67397295 -160127283 + AluJo SINE Alu 24 221 -91 339 25 0 0 chr3 67397325 67397365 -160127213 + (TAA)n Simple_repeat Simple_repeat 2 41 0 316 302 112 0 chr3 67397369 67397485 -160127093 + MIR SINE MIR 26 154 -108 1766 193 116 98 chr3 67397491 67398205 -160126373 - LTR8A LTR ERV1 0 727 1 1846 132 42 45 chr3 67398243 67398577 -160126001 - THE1B LTR MaLR 0 364 32 750 295 100 61 chr3 67398595 67398882 -160125696 - MER21B LTR ERV1 -112 751 477 1453 203 6 37 chr3 67398882 67399203 -160125375 + AluJo SINE Alu 1 311 -1 750 295 100 61 chr3 67399203 67399636 -160124942 - MER21B LTR ERV1 -386 477 3 1495 205 7 14 chr3 67399766 67400049 -160124529 + AluJo SINE Alu 6 286 -26 709 192 22 33 chr3 67400644 67400826 -160123752 - MLT2B1 LTR ERVL -340 180 1 1465 152 86 20 chr3 67400879 67401181 -160123397 - MER84 LTR ERVI -185 322 1 1728 204 9 11 chr3 67401960 67402376 -160122202 - Tigger2 DNA MER2_type -19 2699 7 1119 153 21 6 chr3 67402518 67402758 -160121820 + Tigger2 DNA MER2_type 11 2537 -181 1611 197 31 0 chr3 67402904 67403194 -160121384 - AluSx SINE Alu -5 307 9 272 243 43 0 chr3 67403355 67403425 -160121153 + MIR SINE MIR 95 167 -95 216 229 0 0 chr3 67403433 67403481 -160121097 - MIR SINE MIR -109 153 106 274 200 40 40 chr3 67403562 67403637 -160120941 + MIR SINE MIR 108 182 -80 230 277 0 0 chr3 67406239 67406286 -160118292 + MLT1F1 LTR MaLR 303 349 -218 1260 217 11 4 chr3 67406484 67406756 -160117822 + AluJo SINE Alu 11 284 -28 294 220 18 37 chr3 67406852 67406961 -160117617 - L1ME LINE L1 -302 5819 5713 1965 167 28 0 chr3 67407188 67407542 -160117036 + THE1B LTR MaLR 1 364 0 1751 258 9 14 chr3 67407787 67408349 -160116229 - MLT1F1 LTR MaLR 0 567 1 289 148 49 33 chr3 67408592 67408714 -160115864 + (TATAA)n Simple_repeat Simple_repeat 1 124 0 199 102 20 20 chr3 67408727 67408776 -160115802 + (TA)n Simple_repeat Simple_repeat 1 49 0 59 0 0 0 chr3 67408776 67408835 -160115743 + AT_rich Low_complexity Low_complexity 1 59 0 219 224 0 0 chr3 67409124 67409173 -160115405 + CT-rich Low_complexity Low_complexity 2 50 0 241 68 45 0 chr3 67409299 67409343 -160115235 + L1PA7 LINE L1 6108 6153 -1 1127 294 29 29 chr3 67410161 67410650 -160113928 + LTR40a LTR ERVL 6 494 -25 422 271 40 68 chr3 67410750 67410808 -160113770 - L1 LINE L1 -1676 4470 4412 1493 188 0 40 chr3 67410808 67411112 -160113466 - AluJb SINE Alu -10 302 11 422 271 40 68 chr3 67411112 67411304 -160113274 - L1 LINE L1 -1734 4412 4227 260 250 53 8 chr3 67411403 67411535 -160113043 - MER103 DNA DNA -4 162 25 713 249 56 14 chr3 67412493 67412706 -160111872 - MER58B DNA MER1_type -2 339 118 1354 206 0 43 chr3 67412714 67412967 -160111611 - AluSx SINE Alu -70 242 1 31 0 0 0 chr3 67412967 67412998 -160111580 + AT_rich Low_complexity Low_complexity 1 31 0 300 257 37 9 chr3 67413083 67413192 -160111386 + L1ME4a LINE L1 5808 5919 -202 28 19 0 56 chr3 67413254 67413308 -160111270 + AT_rich Low_complexity Low_complexity 1 51 0 1384 210 13 23 chr3 67413940 67414249 -160110329 - AluJb SINE Alu -6 306 1 252 322 46 63 chr3 67415002 67415176 -160109402 - MIR SINE MIR -27 235 65 959 191 22 49 chr3 67416512 67416737 -160107841 + MER20 DNA MER1_type 1 219 0 1859 157 4 0 chr3 67416991 67417272 -160107306 + AluSx SINE Alu 23 304 -8 1330 260 10 0 chr3 67418546 67418850 -160105728 - AluJb SINE Alu -5 307 1 290 226 143 0 chr3 67418957 67419041 -160105537 - MER5B DNA MER1_type 0 178 83 320 128 0 12 chr3 67419440 67419518 -160105060 - MLT2B3 LTR ERVL 0 554 408 716 87 16 49 chr3 67419562 67419745 -160104833 + (TAGA)n Simple_repeat Simple_repeat 2 178 0 489 145 17 41 chr3 67419815 67419987 -160104591 + (TAGA)n Simple_repeat Simple_repeat 1 168 0 1872 171 3 3 chr3 67420110 67420420 -160104158 + AluSx SINE Alu 1 310 -2 3552 147 11 24 chr3 67421306 67421968 -160102610 - MER39B LTR ERV1 0 653 1 741 53 0 0 chr3 67422192 67422286 -160102292 + (CATTG)n Simple_repeat Simple_repeat 2 95 0 980 129 0 14 chr3 67422305 67422452 -160102126 - AluSg/x SINE Alu -45 267 123 572 99 25 16 chr3 67422467 67422588 -160101990 + (TAGA)n Simple_repeat Simple_repeat 1 122 0 198 128 0 0 chr3 67422808 67422847 -160101731 + (TA)n Simple_repeat Simple_repeat 2 40 0 347 253 23 0 chr3 67422848 67422935 -160101643 + L1MC4 LINE L1 6614 6702 -1340 182 179 18 0 chr3 67422980 67423036 -160101542 + (TA)n Simple_repeat Simple_repeat 2 58 0 1293 251 33 0 chr3 67424555 67424853 -160099725 - AluJo SINE Alu 0 307 1 629 219 0 0 chr3 67424865 67424988 -160099590 - AluJb SINE Alu -189 123 1 533 247 44 43 chr3 67425466 67425676 -160098902 + MLT1E1 LTR MaLR 33 247 -407 1436 149 60 7 chr3 67425717 67426078 -160098500 - L1PB4 LINE L1 -600 5556 5184 * 2855 175 5 18 chr3 67426077 67426647 -160097931 + L1PB4 LINE L1 5565 6127 -29 503 173 209 0 chr3 67426649 67426759 -160097819 + FLAM_C SINE Alu 1 133 0 680 71 20 0 chr3 67428239 67428337 -160096241 + (TATTG)n Simple_repeat Simple_repeat 3 102 0 2564 161 0 2 chr3 67428339 67428773 -160095805 - L1PB4 LINE L1 -17 6139 5707 1904 134 29 3 chr3 67428773 67429117 -160095461 + L1PB4 LINE L1 5345 5697 -459 630 181 0 15 chr3 67429399 67429532 -160095046 + L1MA5 LINE L1 5972 6102 -198 2900 13 0 0 chr3 67430133 67430472 -160094106 - AluYb8 SINE Alu 0 339 1 1472 211 10 30 chr3 67431080 67431384 -160093194 - AluJb SINE Alu -14 298 1 1876 165 7 3 chr3 67431938 67432229 -160092349 - AluSx SINE Alu -20 292 1 22 0 0 0 chr3 67433067 67433089 -160091489 + AT_rich Low_complexity Low_complexity 1 22 0 2096 121 0 19 chr3 67433115 67433430 -160091148 + AluY SINE Alu 1 309 -2 2430 167 82 30 chr3 67433602 67434178 -160090400 - L1MB7 LINE L1 -12 6172 5567 462 79 0 0 chr3 67434996 67435059 -160089519 + (TA)n Simple_repeat Simple_repeat 2 64 0 619 0 0 47 chr3 67435527 67435570 -160089008 + (TCTA)n Simple_repeat Simple_repeat 1 121 0 619 0 0 47 chr3 67435570 67435655 -160088923 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 2218 114 8 75 chr3 67437744 67438131 -160086447 + THE1B LTR MaLR 1 361 -3 248 264 116 32 chr3 67439986 67440141 -160084437 + MER34 LTR ERV1 368 535 -7 1917 151 23 0 chr3 67440590 67440900 -160083678 - AluSx SINE Alu 0 317 1 1895 198 92 29 chr3 67442431 67442941 -160081637 - MER67A LTR ERV1 -1 542 1 801 196 23 0 chr3 67443825 67443998 -160080580 - L1MA8 LINE L1 -5 6286 6110 1302 140 104 107 chr3 67444776 67444930 -160079648 - AluSg1 SINE Alu -2 307 154 189 0 0 0 chr3 67444930 67444951 -160079627 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 2316 65 0 0 chr3 67444951 67445230 -160079348 - AluY SINE Alu -32 279 1 1302 140 104 107 chr3 67445230 67445245 -160079333 - AluSg1 SINE Alu -154 155 141 2037 116 24 0 chr3 67445245 67445538 -160079040 - AluY SINE Alu -11 300 1 1302 140 104 107 chr3 67445538 67445674 -160078904 - AluSg1 SINE Alu -168 141 1 771 257 120 51 chr3 67446066 67446498 -160078080 - MLT1C LTR MaLR 0 467 6 192 307 68 11 chr3 67447621 67447709 -160076869 - MIR SINE MIR -89 173 81 472 268 86 19 chr3 67447807 67447973 -160076605 - Charlie7 DNA MER1_type -8 2604 2450 1434 214 34 0 chr3 67447973 67448268 -160076310 + AluJo SINE Alu 1 305 -7 472 268 86 19 chr3 67448268 67448463 -160076115 - Charlie7 DNA MER1_type -162 2450 2219 1007 161 11 22 chr3 67448498 67448678 -160075900 - AluSg/x SINE Alu 0 312 135 252 0 0 0 chr3 67448681 67448709 -160075869 + (TA)n Simple_repeat Simple_repeat 1 28 0 471 294 35 10 chr3 67448713 67448910 -160075668 - Charlie7 DNA MER1_type -479 2133 1932 653 247 125 18 chr3 67448913 67449192 -160075386 - L1M4 LINE L1 -2404 3742 3434 1692 120 0 32 chr3 67449294 67449544 -160075034 - AluY SINE Alu -69 242 1 275 167 0 0 chr3 67449545 67449593 -160074985 + MADE1 DNA Mariner 33 80 0 722 258 17 0 chr3 67449609 67449787 -160074791 + MLT1A1 LTR MaLR 185 365 0 1463 220 78 50 chr3 67449899 67450362 -160074216 - MER39 LTR ERV1 0 707 232 597 90 0 0 chr3 67450916 67451005 -160073573 + (CATCT)n Simple_repeat Simple_repeat 1 89 0 1856 160 3 3 chr3 67451006 67451294 -160073284 - AluSx SINE Alu -17 295 8 233 133 0 44 chr3 67451831 67451876 -160072702 - L1MC4 LINE L1 -1342 6700 6658 1503 174 10 34 chr3 67452093 67452391 -160072187 - AluJo SINE Alu -9 303 13 1859 221 64 18 chr3 67452425 67452864 -160071714 - LTR2B LTR ERV1 0 490 32 5700 86 1 1 chr3 67452883 67453629 -160070949 - Harlequin LTR ERV1 0 6896 6151 5359 190 13 13 chr3 67453613 67454591 -160069987 - Harlequin LTR ERV1 -1607 6206 5229 * 1560 101 9 4 chr3 67454584 67454812 -160069766 - pTR5 LTR ERV1 -2038 400 172 * 339 235 31 20 chr3 67454815 67454913 -160069665 - LTR30 LTR ERV1 -80 642 544 4282 143 24 27 chr3 67454913 67456450 -160068128 - Harlequin LTR ERV1 0 8399 504 317 200 0 0 chr3 67456455 67456515 -160068063 - Harlequin LTR ERV1 -839 7560 7501 * 446 166 61 82 chr3 67456511 67456848 -160067730 - Harlequin LTR ERV1 -5755 1141 840 11118 99 3 7 chr3 67456849 67458360 -160066218 - Harlequin LTR ERV1 -3455 4944 3439 1020 160 9 9 chr3 67458460 67458673 -160065905 + L1MA5 LINE L1 6088 6300 0 21 36 0 0 chr3 67459123 67459151 -160065427 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr3 67459477 67459510 -160065068 + AT_rich Low_complexity Low_complexity 1 33 0 482 139 0 0 chr3 67459923 67459995 -160064583 - THE1C LTR MaLR -303 72 1 318 133 398 24 chr3 67459995 67460078 -160064500 - MER4C LTR ERV1 -50 415 302 1871 124 22 68 chr3 67460147 67460517 -160064061 - MER4A LTR ERV1 -311 353 1 1950 155 0 0 chr3 67461252 67461555 -160063023 + AluSc SINE Alu 1 303 -6 613 215 0 0 chr3 67461564 67461671 -160062907 + FLAM_C SINE Alu 2 108 -35 414 0 0 0 chr3 67461673 67461719 -160062859 + (CA)n Simple_repeat Simple_repeat 1 46 0 400 264 0 0 chr3 67461845 67461932 -160062646 - MIR SINE MIR -103 159 73 2170 213 35 2 chr3 67461941 67462425 -160062153 - L1MC3 LINE L1 -10 7775 7276 459 158 42 11 chr3 67462425 67462520 -160062058 + MER4A LTR ERV1 1 98 -566 1616 173 7 30 chr3 67462570 67462870 -160061708 + MER4A LTR ERV1 372 664 0 955 67 193 0 chr3 67462873 67463023 -160061555 + MER4A-int LTR ERV1 1 179 -6419 483 229 92 0 chr3 67463023 67463164 -160061414 - L1MC4 LINE L1 -517 7268 7129 197 322 0 0 chr3 67463442 67463501 -160061077 - L2 LINE L2 -236 3036 2978 1765 163 3 0 chr3 67463534 67463983 -160060595 + AluSp SINE Alu 1 450 0 275 158 0 18 chr3 67463983 67464040 -160060538 + GA-rich Low_complexity Low_complexity 1 56 0 1539 208 7 7 chr3 67464397 67464686 -160059892 - AluJo SINE Alu -23 289 1 337 168 0 32 chr3 67465059 67465154 -160059424 + G-rich Low_complexity Low_complexity 3 94 0 416 122 0 14 chr3 67465220 67465294 -160059284 + (GGGGA)n Simple_repeat Simple_repeat 3 75 0 497 219 6 18 chr3 67466016 67466185 -160058393 + GA-rich Low_complexity Low_complexity 4 170 0 294 267 0 0 chr3 67466202 67466303 -160058275 + GA-rich Low_complexity Low_complexity 4 104 0 19762 205 8 13 chr3 67466414 67470002 -160054576 + HERV9 LTR ERV1 1664 5233 -2580 4382 131 47 30 chr3 67469998 67470941 -160053637 + pTR5 LTR ERV1 741 2025 -413 * 266 224 0 47 chr3 67470941 67471026 -160053552 + LTR30 LTR ERV1 544 624 -98 7570 129 24 28 chr3 67471026 67473349 -160051229 + HERV9 LTR ERV1 2 2158 -1935 797 173 40 40 chr3 67473449 67473622 -160050956 - MSTD LTR MaLR -223 173 1 215 270 0 16 chr3 67473623 67473686 -160050892 + (TGG)n Simple_repeat Simple_repeat 1 62 0 224 315 41 0 chr3 67473793 67473866 -160050712 - L2 LINE L2 -239 3074 2999 296 269 113 75 chr3 67474489 67474675 -160049903 + LTR16A1 LTR ERVL 1 193 -264 1554 300 18 9 chr3 67474682 67475138 -160049440 - MLT1G LTR MaLR 0 590 131 604 210 24 17 chr3 67475138 67475770 -160048808 + L1MB3 LINE L1 5373 6117 -66 2030 136 60 28 chr3 67475770 67476123 -160048455 + THE1B LTR MaLR 1 364 0 604 210 24 17 chr3 67476123 67476188 -160048390 + L1MB3 LINE L1 6117 6180 -3 374 290 19 0 chr3 67476211 67476318 -160048260 - MLT1G LTR MaLR -457 133 25 843 222 12 0 chr3 67476333 67476500 -160048078 - AluJo SINE Alu -23 289 121 697 247 7 0 chr3 67476636 67476782 -160047796 + MLT1A1 LTR MaLR 159 305 -60 543 31 0 0 chr3 67476867 67476932 -160047646 + (TTTTC)n Simple_repeat Simple_repeat 2 66 0 2140 128 5 53 chr3 67476937 67477311 -160047267 - L1PB1 LINE L1 -2 6149 5794 3596 86 94 0 chr3 67477312 67477961 -160046617 + L1PB1 LINE L1 5116 5806 -348 545 152 105 110 chr3 67478059 67478250 -160046328 + LTR49 LTR ERV1 406 595 0 232 119 24 0 chr3 67478701 67478743 -160045835 + MADE1 DNA Mariner 1 43 -37 717 306 33 0 chr3 67478757 67479002 -160045576 - L1MB7 LINE L1 -67 6117 5865 16342 95 10 9 chr3 67479002 67482201 -160042377 - L1PA6 LINE L1 0 6154 2988 18578 142 12 17 chr3 67482303 67485325 -160039253 - L1PA6 LINE L1 -3131 3015 11 361 100 0 0 chr3 67485334 67485384 -160039194 + MADE1 DNA Mariner 31 80 0 712 256 10 10 chr3 67487762 67487957 -160036621 + L1MEc LINE L1 360 554 -6167 1289 253 35 29 chr3 67487981 67488356 -160036222 + L1MEc LINE L1 791 1167 -5554 1426 217 49 51 chr3 67488410 67489542 -160035036 - L1M4 LINE L1 -1075 5071 3814 184 302 0 0 chr3 67490218 67490271 -160034307 + MIR SINE MIR 78 130 -78 614 250 29 39 chr3 67491296 67491500 -160033078 + MER20 DNA MER1_type 3 204 -15 2782 211 67 5 chr3 67492151 67492952 -160031626 + L1MEc LINE L1 1562 2412 -4128 855 253 18 5 chr3 67492951 67493172 -160031406 - L1MD1 LINE L1 -101 6141 5918 * 317 135 54 0 chr3 67493183 67493257 -160031321 + L1MD1 LINE L1 6163 6240 -2 1973 156 0 0 chr3 67493357 67493652 -160030926 - AluSc SINE Alu -13 296 2 602 289 0 13 chr3 67494965 67495124 -160029454 - MER58A DNA MER1_type 0 158 2 446 193 0 0 chr3 67495712 67495800 -160028778 + AluJ/FRAM SINE Alu 217 304 -8 1404 216 76 61 chr3 67496479 67496742 -160027836 + MER66B LTR ERV1 4 279 -207 1969 163 3 0 chr3 67496742 67497048 -160027530 + AluSx SINE Alu 1 307 -5 1404 216 76 61 chr3 67497048 67497260 -160027318 + MER66B LTR ERV1 279 486 0 332 302 0 0 chr3 67497506 67497592 -160026986 - MER5A DNA MER1_type -84 105 20 221 246 0 49 chr3 67497734 67497795 -160026783 - MER5B DNA MER1_type -8 170 113 1773 213 50 11 chr3 67497846 67498302 -160026276 - L1MB5 LINE L1 -8 6166 5693 185 0 40 0 chr3 67498363 67498388 -160026190 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 270 116 0 0 chr3 67498398 67498441 -160026137 + (CA)n Simple_repeat Simple_repeat 2 44 0 1450 182 18 96 chr3 67498482 67498877 -160025701 + MLT1A1 LTR MaLR 1 364 -1 303 228 0 13 chr3 67498878 67498957 -160025621 - L1MB5 LINE L1 -566 5618 5541 556 178 58 162 chr3 67499090 67499153 -160025425 + MER5A DNA MER1_type 14 82 -107 1631 201 10 0 chr3 67499153 67499446 -160025132 + AluSx SINE Alu 1 296 -16 556 178 58 162 chr3 67499446 67499573 -160025005 + MER5A DNA MER1_type 82 184 -5 566 303 56 26 chr3 67499575 67499879 -160024699 - L1ME4a LINE L1 -209 5912 5600 31 44 0 0 chr3 67500068 67500113 -160024465 + AT_rich Low_complexity Low_complexity 1 45 0 2873 163 91 10 chr3 67501016 67501612 -160022966 + LTR9B LTR ERV1 1 644 0 1568 206 86 30 chr3 67502568 67503001 -160021577 + LTR2B LTR ERV1 32 488 -2 1011 147 0 0 chr3 67503002 67503158 -160021420 + Harlequin LTR ERV1 1 156 -6740 374 127 0 0 chr3 67503158 67503221 -160021357 + Harlequin LTR ERV1 459 521 -6375 1207 157 25 4 chr3 67504416 67504658 -160019920 - L1MB3 LINE L1 -13 6170 5924 1078 146 73 16 chr3 67504659 67504851 -160019727 + MER51A LTR ERV1 1 203 -431 1323 214 50 23 chr3 67505232 67505531 -160019047 + AluJb SINE Alu 1 307 -5 216 349 28 9 chr3 67506233 67506342 -160018236 + MIR SINE MIR 2 112 -150 1472 193 6 55 chr3 67507598 67507909 -160016669 + AluJo SINE Alu 1 296 -16 503 187 65 0 chr3 67508032 67508155 -160016423 - MLT2B1 LTR ERVL -364 156 26 7323 131 67 15 chr3 67508913 67511888 -160012690 + L1PA6 LINE L1 469 3289 -2865 7323 146 48 0 chr3 67511888 67514305 -160010273 + L1PA6 LINE L1 3660 6153 -1 7323 131 67 15 chr3 67514305 67514320 -160010258 + L1PA6 LINE L1 3289 6153 -1 559 258 18 0 chr3 67514633 67514796 -160009782 - MLT1A1 LTR MaLR -1 364 199 189 107 0 0 chr3 67516641 67516669 -160007909 + (CA)n Simple_repeat Simple_repeat 1 28 0 3346 194 142 105 chr3 67517192 67517843 -160006735 + L1 LINE L1 3226 3852 -2294 762 140 0 0 chr3 67517843 67517957 -160006621 + AluSg/x SINE Alu 181 294 -16 3346 194 142 105 chr3 67517957 67519103 -160005475 + L1 LINE L1 3852 5206 -940 2081 268 41 14 chr3 67519433 67520068 -160004510 + MER82 DNA MER2_type 1 652 -1 235 221 34 40 chr3 67520086 67520235 -160004343 + (TATAA)n Simple_repeat Simple_repeat 1 148 0 1313 178 101 43 chr3 67520340 67520666 -160003912 - THE1B LTR MaLR -2 362 18 4766 139 10 40 chr3 67520667 67521794 -160002784 + L1PB1 LINE L1 5029 6127 -24 308 51 0 0 chr3 67521952 67521991 -160002587 - THE1B LTR MaLR -336 39 1 287 306 132 65 chr3 67522180 67522566 -160002012 + L2 LINE L2 2364 2775 -539 192 238 139 74 chr3 67522692 67522894 -160001684 - L2 LINE L2 -1217 2097 1883 1760 193 7 0 chr3 67523059 67523355 -160001223 + AluSx SINE Alu 6 303 -9 2017 148 3 0 chr3 67524798 67525095 -159999483 - AluSx SINE Alu -14 298 1 6798 60 0 0 chr3 67525368 67526476 -159998102 - L1PA4 LINE L1 -2 6153 5040 1863 126 0 3 chr3 67528786 67529079 -159995499 + L1P4 LINE L1 5450 5741 -427 1541 207 4 4 chr3 67529265 67529545 -159995033 + AluJo SINE Alu 3 282 -30 2108 125 23 3 chr3 67529834 67530138 -159994440 + AluSg SINE Alu 1 310 0 22 35 0 0 chr3 67530621 67530650 -159993928 + AT_rich Low_complexity Low_complexity 1 29 0 262 349 60 7 chr3 67530835 67530984 -159993594 + MIR SINE MIR 56 212 -50 357 318 65 58 chr3 67531064 67531268 -159993310 - L1ME LINE L1 -297 5824 5616 2103 125 0 13 chr3 67531268 67531573 -159993005 - AluSc SINE Alu -8 301 1 357 318 65 58 chr3 67531573 67531629 -159992949 - L1ME LINE L1 -505 5616 5562 1348 181 32 42 chr3 67532957 67533267 -159991311 - AluJo SINE Alu -5 307 1 1010 228 10 0 chr3 67533274 67533476 -159991102 - MER58A DNA MER1_type -17 207 4 1911 156 3 3 chr3 67533608 67533893 -159990685 + AluSx SINE Alu 1 288 -24 219 88 0 0 chr3 67533893 67533927 -159990651 + (TTAA)n Simple_repeat Simple_repeat 3 36 0 1911 156 3 3 chr3 67533927 67533943 -159990635 + AluSx SINE Alu 287 302 -10 325 251 53 18 chr3 67534048 67534170 -159990408 + (TCTA)n Simple_repeat Simple_repeat 1 156 -66 207 0 0 0 chr3 67534170 67534193 -159990385 + (TG)n Simple_repeat Simple_repeat 2 24 0 325 251 53 18 chr3 67534193 67534263 -159990315 + (TCTA)n Simple_repeat Simple_repeat 156 222 0 27 29 0 0 chr3 67535117 67535151 -159989427 + AT_rich Low_complexity Low_complexity 1 34 0 348 295 86 0 chr3 67535206 67535311 -159989267 + MER81 DNA DNA 1 114 0 619 256 18 55 chr3 67535730 67535949 -159988629 - MER20 DNA MER1_type -7 212 2 627 236 141 5 chr3 67536590 67536781 -159987797 - MER20 DNA MER1_type -1 218 2 491 319 7 0 chr3 67536845 67536983 -159987595 - MER5B DNA MER1_type -38 140 2 263 307 119 0 chr3 67537300 67537401 -159987177 + L2 LINE L2 2450 2562 -752 265 288 0 0 chr3 67537595 67537661 -159986917 + MER20 DNA MER1_type 83 148 -71 581 254 89 37 chr3 67537676 67538019 -159986559 + L2 LINE L2 2770 3134 -179 1380 190 21 0 chr3 67538023 67538265 -159986313 + AluSx SINE Alu 31 277 -35 244 286 62 93 chr3 67538378 67538668 -159985910 + L2 LINE L2 2597 2877 -437 235 339 87 9 chr3 67638778 67638893 -159885685 - MIR SINE MIR -79 183 60 289 301 115 47 chr3 67641522 67641721 -159882857 + MIR SINE MIR 16 233 -29 268 326 28 108 chr3 67641988 67642313 -159882265 - L2 LINE L2 -92 3180 2882 513 143 12 0 chr3 67644217 67644301 -159880277 - MER5B DNA MER1_type 0 178 94 397 241 128 28 chr3 67644568 67644709 -159879869 - L2 LINE L2 0 3313 3159 204 40 0 0 chr3 67646051 67646076 -159878502 + (TAA)n Simple_repeat Simple_repeat 1 25 0 558 290 29 14 chr3 67646682 67646871 -159877707 - MIR SINE MIR -60 202 13 289 384 62 0 chr3 67646948 67647094 -159877484 + MIR3 SINE MIR 15 169 -39 504 339 62 0 chr3 67647158 67647350 -159877228 + L3 LINE CR1 606 809 -768 845 270 42 5 chr3 67647399 67647614 -159876964 - MIR SINE MIR -2 260 38 999 315 112 36 chr3 67647640 67648202 -159876376 + L3 LINE CR1 962 1566 -11 2399 132 6 3 chr3 67650563 67650926 -159873652 + THE1B LTR MaLR 1 364 0 2208 122 6 6 chr3 67651180 67651492 -159873086 - AluSx SINE Alu 0 312 1 355 260 167 44 chr3 67651829 67652033 -159872545 - MIR SINE MIR -11 251 23 577 231 0 25 chr3 67652072 67652163 -159872415 - L1MA10 LINE L1 0 6334 6247 1716 179 62 0 chr3 67652163 67652487 -159872091 - MER2 DNA MER2_type 0 344 1 577 231 0 25 chr3 67652487 67652555 -159872023 - L1MA10 LINE L1 -87 6247 6179 3054 186 26 9 chr3 67652677 67653334 -159871244 - L1MA9 LINE L1 -184 6128 5461 260 19 19 58 chr3 67654367 67654419 -159870159 + (TA)n Simple_repeat Simple_repeat 1 50 0 842 238 73 137 chr3 67654511 67655141 -159869437 - MLT1G LTR MaLR 0 590 1 738 254 54 5 chr3 67655637 67655822 -159868756 + MIR SINE MIR 36 229 -33 297 0 0 0 chr3 67656611 67656644 -159867934 + (TG)n Simple_repeat Simple_repeat 2 34 0 490 296 39 17 chr3 67657069 67657248 -159867330 - MIR SINE MIR -3 259 77 494 262 70 73 chr3 67657344 67657688 -159866890 - MLT1H LTR MaLR -194 355 13 774 290 77 45 chr3 67658328 67658704 -159865874 - L2 LINE L2 0 3272 2885 301 267 133 0 chr3 67659287 67659377 -159865201 - L2 LINE L2 -2 3270 3169 390 162 0 0 chr3 67659749 67659823 -159864755 + (TG)n Simple_repeat Simple_repeat 2 75 0 369 0 0 0 chr3 67660102 67660143 -159864435 + (TG)n Simple_repeat Simple_repeat 2 42 0 262 185 109 22 chr3 67660582 67660674 -159863904 + L1ME3 LINE L1 5841 5940 -222 229 108 0 0 chr3 67660718 67660755 -159863823 + MER3 DNA MER1_type 13 49 -160 293 94 0 0 chr3 67660771 67660824 -159863754 + L1ME3 LINE L1 6109 6161 -1 * 355 111 0 0 chr3 67660818 67660890 -159863688 + L1ME2 LINE L1 6091 6162 0 334 225 101 0 chr3 67661174 67661263 -159863315 + MIR SINE MIR 106 203 -59 325 250 0 40 chr3 67661281 67661357 -159863221 + MER5A DNA MER1_type 31 103 -86 1862 144 0 0 chr3 67661384 67661655 -159862923 + AluSx SINE Alu 42 312 0 1783 137 121 48 chr3 67661662 67662035 -159862543 - MSTA LTR MaLR -28 400 1 480 314 142 39 chr3 67662472 67663335 -159861243 + L2 LINE L2 2362 3311 -2 319 287 79 73 chr3 67664344 67664508 -159860070 - MIR SINE MIR -51 211 47 1020 166 16 16 chr3 67664717 67664904 -159859674 + MER5A DNA MER1_type 1 187 -2 232 240 20 0 chr3 67664967 67665017 -159859561 + MIR SINE MIR 25 75 -187 * 394 267 12 0 chr3 67665016 67665102 -159859476 - L2 LINE L2 -2 3311 3225 230 320 156 0 chr3 67665165 67665287 -159859291 + MIR SINE MIR 112 252 -10 189 230 42 18 chr3 67666176 67666341 -159858237 + GA-rich Low_complexity Low_complexity 2 170 0 616 319 33 9 chr3 67667657 67667870 -159856708 - MIR SINE MIR -31 231 14 297 0 0 0 chr3 67667892 67667925 -159856653 + (CA)n Simple_repeat Simple_repeat 2 34 0 238 241 135 63 chr3 67668181 67668388 -159856190 + L1 LINE L1 4794 5015 -1131 1682 145 0 0 chr3 67668835 67669077 -159855501 + AluSx SINE Alu 55 296 -16 2162 162 14 43 chr3 67669403 67669847 -159854731 + LTR3 LTR ERVK 1 431 -1 696 309 49 8 chr3 67669874 67670117 -159854461 - MIR SINE MIR -1 261 9 1322 99 0 0 chr3 67670233 67670404 -159854174 + AluSq SINE Alu 138 308 -5 194 218 0 18 chr3 67670410 67670465 -159854113 + GA-rich Low_complexity Low_complexity 3 56 0 476 283 57 25 chr3 67671847 67672006 -159852572 + MIR SINE MIR 34 197 -65 2222 112 0 0 chr3 67673024 67673337 -159851241 - AluSq SINE Alu 0 313 1 284 222 16 0 chr3 67673651 67673714 -159850864 - MER113 DNA MER1_type? 0 521 458 236 297 40 59 chr3 67673924 67674025 -159850553 - MIR SINE MIR -77 131 33 263 274 196 10 chr3 67674576 67674678 -159849900 - MIR SINE MIR -113 149 29 1218 204 4 9 chr3 67674899 67675124 -159849454 + MER58A DNA MER1_type 1 224 0 224 426 28 0 chr3 67675193 67675301 -159849277 + MIR SINE MIR 36 146 -62 434 172 10 0 chr3 67676812 67676911 -159847667 + CT-rich Low_complexity Low_complexity 3 102 0 293 260 24 16 chr3 67678023 67678146 -159846432 - LTR67 LTR ERVL -6 551 428 21 36 0 0 chr3 67679392 67679420 -159845158 + AT_rich Low_complexity Low_complexity 1 28 0 1905 157 18 18 chr3 67679420 67679802 -159844776 - L1MA8 LINE L1 -20 6271 5890 384 288 99 0 chr3 67680182 67680394 -159844184 + L1MC4 LINE L1 7783 8015 -27 371 276 8 8 chr3 67680663 67680786 -159843792 + L1MC/D LINE L1 5684 5806 -2002 1239 288 51 14 chr3 67680890 67681530 -159843048 + L1ME3A LINE L1 5281 5947 -223 264 30 0 0 chr3 67681761 67681794 -159842784 + (TCTCTG)n Simple_repeat Simple_repeat 2 34 0 3245 225 47 24 chr3 67681941 67683032 -159841546 - L1MEc LINE L1 -744 5471 4356 378 196 0 142 chr3 67683041 67683245 -159841333 - LTR41 LTR ERVL -14 759 585 881 189 16 11 chr3 67683261 67683452 -159841126 - MLT1A1 LTR MaLR -1 364 173 594 257 0 49 chr3 67683747 67683930 -159840648 - LTR41 LTR ERVL -598 175 2 1480 256 14 29 chr3 67684011 67684573 -159840005 - L1MEc LINE L1 -1924 4291 3738 * 13960 182 25 26 chr3 67684572 67685230 -159839348 - L1PB1 LINE L1 -8 6859 6202 2079 145 0 16 chr3 67685230 67685547 -159839031 - AluSx SINE Alu 0 312 1 13960 182 25 26 chr3 67685547 67690368 -159834210 - L1PB1 LINE L1 -665 6202 1392 608 265 9 9 chr3 67690345 67690556 -159834022 - L1PB1 LINE L1 -6647 216 6 * 2607 219 150 58 chr3 67690587 67691951 -159832627 - L1MEc LINE L1 -2456 3759 2271 40362 52 1 3 chr3 67691953 67698118 -159826460 - L1PA4 LINE L1 0 6155 3 1006 272 106 30 chr3 67698141 67698869 -159825709 - L1MEc LINE L1 -4073 2323 1541 909 293 47 16 chr3 67698862 67699461 -159825117 - L1MEc LINE L1 -5009 1208 723 * 2026 119 51 0 chr3 67699519 67699812 -159824766 + AluSx SINE Alu 1 308 -4 521 361 35 47 chr3 67699822 67700226 -159824352 - L1MEc LINE L1 -5724 672 274 1149 306 81 10 chr3 67700486 67701179 -159823399 - HAL1b LINE L1 -391 957 216 682 283 190 31 chr3 67702605 67703081 -159821497 + MLT1G1 LTR MaLR 21 595 0 1535 201 13 48 chr3 67703806 67704184 -159820394 + MLT1A1 LTR MaLR 1 365 0 293 310 132 0 chr3 67705916 67706045 -159818533 + MIR SINE MIR 111 256 -6 228 280 0 0 chr3 67706116 67706166 -159818412 + polypyrimidine Low_complexity Low_complexity 1 50 0 262 337 103 56 chr3 67706574 67706948 -159817630 + L2 LINE L2 2716 3099 -173 395 204 0 0 chr3 67707271 67707369 -159817209 + MER117 DNA MER1_type 48 145 -52 2262 128 64 24 chr3 67709477 67709900 -159814678 + L1MC1 LINE L1 5886 6325 -8 992 39 77 8 chr3 67710023 67710153 -159814425 - MER85 DNA T2_type 0 139 1 259 310 70 64 chr3 67710375 67710546 -159814032 + MER5B DNA MER1_type 5 176 -2 246 343 69 11 chr3 67710955 67711130 -159813448 - MIR SINE MIR -58 204 20 891 118 30 209 chr3 67711179 67711438 -159813140 - MER33 DNA MER1_type -2261 324 139 5056 24 0 0 chr3 67711438 67712023 -159812555 - L1PA3 LINE L1 0 6155 5571 891 118 30 209 chr3 67712023 67712102 -159812476 - MER33 DNA MER1_type -2446 139 47 931 297 153 20 chr3 67712268 67712886 -159811692 - L2 LINE L2 -1 3312 2612 297 283 192 0 chr3 67713400 67713499 -159811079 + L2 LINE L2 3185 3302 -11 1296 253 123 45 chr3 67716772 67717677 -159806901 - L2 LINE L2 -2 3311 2332 1751 182 0 16 chr3 67717677 67717984 -159806594 - AluJb SINE Alu -10 302 1 1296 253 123 45 chr3 67717984 67718007 -159806571 - L2 LINE L2 -981 2332 2312 249 333 26 13 chr3 67718005 67718048 -159806530 - MER5A DNA MER1_type -30 159 113 * 630 270 62 77 chr3 67718048 67718566 -159806012 - MLT1J LTR MaLR 0 511 2 249 333 26 13 chr3 67718566 67718600 -159805978 - MER5A DNA MER1_type -76 113 81 414 0 0 0 chr3 67719299 67719345 -159805233 + (CA)n Simple_repeat Simple_repeat 2 47 0 189 0 0 0 chr3 67719344 67719365 -159805213 + (TC)n Simple_repeat Simple_repeat 1 21 0 * 26 0 0 0 chr3 67719397 67719423 -159805155 + AT_rich Low_complexity Low_complexity 1 26 0 360 326 17 17 chr3 67719655 67719833 -159804745 - MLT1J LTR MaLR -97 414 237 338 222 0 0 chr3 67720611 67720692 -159803886 - L1ME2 LINE L1 -2 6162 6082 2784 219 32 19 chr3 67720710 67721763 -159802815 - L1ME2 LINE L1 -152 6012 4940 312 272 267 5 chr3 67721846 67722005 -159802573 + MIR SINE MIR 4 182 -67 252 300 22 0 chr3 67722071 67722161 -159802417 + MIR SINE MIR 170 261 -1 546 321 60 60 chr3 67722223 67722525 -159802053 - L2 LINE L2 -18 3254 2953 21 0 0 0 chr3 67723889 67723910 -159800668 + AT_rich Low_complexity Low_complexity 1 21 0 239 330 90 30 chr3 67724932 67725032 -159799546 - MIR SINE MIR -87 121 16 290 45 23 0 chr3 67726030 67726074 -159798504 + (TA)n Simple_repeat Simple_repeat 1 45 0 624 294 12 6 chr3 67726477 67726647 -159797931 + MIR SINE MIR 11 181 -81 1781 154 26 29 chr3 67728282 67728627 -159795951 + MER2 DNA MER2_type 1 344 0 367 282 225 30 chr3 67728631 67728802 -159795776 - L2 LINE L2 -1 3312 3176 2087 82 0 4 chr3 67728802 67729072 -159795506 + AluY SINE Alu 40 308 -3 367 282 225 30 chr3 67729072 67729326 -159795252 - L2 LINE L2 -137 3176 2804 210 71 0 0 chr3 67729362 67729390 -159795188 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1262 158 0 19 chr3 67729408 67729623 -159794955 - AluJo SINE Alu 0 312 102 254 221 35 81 chr3 67729623 67729709 -159794869 - L2 LINE L2 -594 2720 2639 234 338 66 29 chr3 67730313 67730449 -159794129 + L2 LINE L2 3096 3236 -36 702 239 90 5 chr3 67731399 67731600 -159792978 + MIR SINE MIR 13 230 -32 474 258 30 112 chr3 67731636 67731903 -159792675 + L2 LINE L2 2551 2795 -519 338 282 0 0 chr3 67732033 67732104 -159792474 + L2 LINE L2 3233 3303 -10 1676 146 93 0 chr3 67732513 67732781 -159791797 - AluSq SINE Alu -18 295 3 296 194 65 0 chr3 67733017 67733079 -159791499 - L2 LINE L2 0 3272 3207 246 264 108 78 chr3 67734002 67734169 -159790409 - MER5A DNA MER1_type -14 175 4 366 23 0 0 chr3 67734676 67734719 -159789859 + (TG)n Simple_repeat Simple_repeat 2 44 0 208 202 36 12 chr3 67734722 67734890 -159789688 + (TA)n Simple_repeat Simple_repeat 2 173 0 285 209 9 17 chr3 67734913 67735028 -159789550 + (TA)n Simple_repeat Simple_repeat 1 114 0 951 262 21 8 chr3 67735133 67735370 -159789208 + MIR SINE MIR 3 242 -20 272 325 142 18 chr3 67735391 67735560 -159789018 - MIR SINE MIR -59 203 14 1279 212 25 50 chr3 67737163 67737526 -159787052 - MLT1A1 LTR MaLR -11 354 1 228 348 98 0 chr3 67738035 67738239 -159786339 + LTR16C LTR ERVL 256 479 -12 1298 254 42 14 chr3 67738662 67739020 -159785558 - L2 LINE L2 -1 3312 2945 756 306 88 20 chr3 67739032 67739440 -159785138 + LTR16B LTR ERVL 29 464 0 1391 257 92 19 chr3 67739440 67739961 -159784617 - L2 LINE L2 -363 2951 2393 42 48 0 0 chr3 67740155 67740218 -159784360 + AT_rich Low_complexity Low_complexity 1 63 0 1150 62 0 0 chr3 67740893 67741037 -159783541 - AluY SINE Alu -11 300 157 213 318 15 15 chr3 67742324 67742390 -159782188 - L2 LINE L2 -1 3271 3206 269 167 21 0 chr3 67742425 67742473 -159782105 - MER117 DNA MER1_type -45 152 104 518 362 41 22 chr3 67742530 67742897 -159781681 - L2 LINE L2 -675 2639 2266 629 313 100 8 chr3 67742922 67743162 -159781416 + MIR SINE MIR 1 262 0 849 193 0 0 chr3 67743396 67743536 -159781042 - FLAM_C SINE Alu -2 141 2 558 290 224 16 chr3 67743973 67744624 -159779954 + L2 LINE L2 2432 3221 -92 726 144 87 113 chr3 67744629 67744817 -159779761 - ORSL DNA AcHobo -2 273 91 2385 95 0 3 chr3 67744817 67745121 -159779457 - AluSc SINE Alu -6 303 1 726 144 87 113 chr3 67745121 67745161 -159779417 - ORSL DNA AcHobo -184 91 51 301 333 0 0 chr3 67745188 67745275 -159779303 + L2 LINE L2 3215 3301 -12 326 61 20 0 chr3 67745333 67745382 -159779196 + (TG)n Simple_repeat Simple_repeat 1 50 0 2333 115 0 0 chr3 67746760 67747064 -159777514 - AluSx SINE Alu -8 304 1 768 268 78 20 chr3 67748146 67748368 -159776210 + MIR SINE MIR 21 252 -10 915 256 89 11 chr3 67749170 67749451 -159775127 - LTR16A LTR ERVL -9 441 139 385 320 36 26 chr3 67752216 67752410 -159772168 + MIR SINE MIR 2 197 -65 520 264 82 25 chr3 67753163 67753322 -159771256 + MIR SINE MIR 30 197 -65 662 322 134 36 chr3 67753385 67754004 -159770574 + L2 LINE L2 2366 3084 -229 26 0 0 0 chr3 67754040 67754066 -159770512 + AT_rich Low_complexity Low_complexity 1 26 0 2305 220 122 16 chr3 67756074 67756638 -159767940 - MLT1E2 LTR MaLR -2 624 1 292 278 102 9 chr3 67757407 67757515 -159767063 + MIR SINE MIR 100 217 -45 189 0 0 0 chr3 67757629 67757650 -159766928 + (TTAAA)n Simple_repeat Simple_repeat 4 24 0 5980 134 10 64 chr3 67758047 67759567 -159765011 - L1PA15 LINE L1 -5 6160 4679 2323 138 19 38 chr3 67759567 67759938 -159764640 - THE1B LTR MaLR 0 364 1 11051 92 3 1 chr3 67759938 67761371 -159763207 - THE1B-int LTR MaLR 0 1580 145 1229 163 40 4 chr3 67761972 67762199 -159762379 + L1PA13 LINE L1 1908 2142 -4645 5118 216 14 6 chr3 67762199 67763336 -159761242 + L1PA13 LINE L1 3335 4480 -2317 258 135 0 0 chr3 67763503 67763540 -159761038 + THE1A LTR MaLR 316 352 -3 1366 98 26 0 chr3 67763543 67763737 -159760841 + THE1A-int LTR MaLR 1 199 -1381 418 354 22 0 chr3 67763757 67763986 -159760592 - L1PA12 LINE L1 -7341 240 7 234 346 112 0 chr3 67764017 67764124 -159760454 - L2 LINE L2 -50 3222 3104 197 280 0 0 chr3 67764192 67764242 -159760336 + L2 LINE L2 3218 3267 -5 4519 143 40 55 chr3 67764815 67765612 -159758966 + LTR1 LTR ERV1 1 785 0 431 351 37 25 chr3 67765700 67765945 -159758633 + L3 LINE CR1 1264 1511 -66 186 226 16 48 chr3 67767679 67767741 -159756837 - L2 LINE L2 -15 3298 3239 2226 209 107 21 chr3 67768070 67768592 -159755986 - MLT1F1 LTR MaLR 0 567 1 2223 109 7 3 chr3 67769090 67769392 -159755186 - AluSc SINE Alu -6 303 1 3515 240 22 30 chr3 67769464 67770470 -159754108 - L1ME1 LINE L1 -19 6407 5259 3903 66 7 83 chr3 67770470 67770913 -159753665 - L1MA1 LINE L1 0 6302 5914 1615 176 3 42 chr3 67770913 67771226 -159753352 + AluSx SINE Alu 1 301 -11 3903 66 7 83 chr3 67771226 67771374 -159753204 - L1MA1 LINE L1 -388 5914 5756 3515 240 22 30 chr3 67771374 67771564 -159753014 - L1ME1 LINE L1 -1167 5259 5069 495 260 9 91 chr3 67771567 67771798 -159752780 - L1ME1 LINE L1 -5415 994 783 872 210 42 72 chr3 67772529 67772862 -159751716 - L1MC5 LINE L1 -746 7215 6893 542 299 64 55 chr3 67772997 67773341 -159751237 - L2 LINE L2 0 3313 2967 44456 44 3 2 chr3 67774943 67780068 -159744510 + L1PA4 LINE L1 2 5132 -1023 2826 19 0 0 chr3 67780068 67780376 -159744202 + AluYb8 SINE Alu 1 308 -10 44456 44 3 2 chr3 67780376 67781401 -159743177 + L1PA4 LINE L1 5132 6154 -1 234 105 0 0 chr3 67783195 67783233 -159741345 + (CAATT)n Simple_repeat Simple_repeat 3 40 0 215 208 21 0 chr3 67783480 67783528 -159741050 - L2 LINE L2 0 3313 3265 369 299 43 30 chr3 67783634 67783798 -159740780 + MIR SINE MIR 93 258 -4 189 0 0 0 chr3 67784224 67784245 -159740333 + (GA)n Simple_repeat Simple_repeat 1 21 0 1059 165 12 0 chr3 67784279 67784449 -159740129 + MER45A DNA AcHobo 6 177 -1 1036 122 0 7 chr3 67786223 67786409 -159738169 + AluSp SINE Alu 140 324 0 414 311 6 30 chr3 67786409 67786576 -159738002 + MER103 DNA DNA 2 164 -2 286 305 134 18 chr3 67787997 67788161 -159736417 - L3b LINE CR1 -258 1325 1143 1729 176 85 16 chr3 67788762 67788894 -159735684 + MLT1B LTR MaLR 1 122 -268 399 16 0 48 chr3 67788894 67788957 -159735621 + (CAAAA)n Simple_repeat Simple_repeat 2 61 0 1729 176 85 16 chr3 67788957 67789187 -159735391 + MLT1B LTR MaLR 122 388 -2 227 280 43 3 chr3 67789333 67789402 -159735176 - MLT1A2 LTR MaLR -310 64 1 631 302 29 5 chr3 67789565 67789770 -159734808 - MIR SINE MIR -50 212 3 262 284 86 90 chr3 67790303 67790571 -159734007 - MLT1H LTR MaLR -166 383 117 366 305 175 11 chr3 67791640 67791817 -159732761 - MIR SINE MIR -4 258 53 534 200 0 0 chr3 67791925 67792015 -159732563 + MIR SINE MIR 61 150 -112 310 218 148 10 chr3 67792011 67792112 -159732466 + MIR3 SINE MIR 57 171 -37 * 213 206 192 14 chr3 67792789 67792862 -159731716 - L2 LINE L2 -41 3231 3146 464 272 6 104 chr3 67793029 67793202 -159731376 + MIR SINE MIR 5 160 -102 441 135 0 0 chr3 67793330 67793419 -159731159 + (CCTG)n Simple_repeat Simple_repeat 2 90 0 708 100 0 0 chr3 67793346 67793466 -159731112 + (TTCC)n Simple_repeat Simple_repeat 1 120 0 228 322 0 0 chr3 67793472 67793531 -159731047 + T-rich Low_complexity Low_complexity 5 63 0 209 81 0 27 chr3 67793546 67793583 -159730995 + (TC)n Simple_repeat Simple_repeat 1 36 0 645 221 87 0 chr3 67793920 67794069 -159730509 + MER63A DNA MER1_type 49 210 0 345 270 90 53 chr3 67794680 67794869 -159729709 - L2 LINE L2 -7 3306 3111 262 238 19 76 chr3 67795107 67795212 -159729366 - MLT1K LTR MaLR -2 586 488 4384 174 84 57 chr3 67795217 67795370 -159729208 + L1MC3 LINE L1 6705 6852 -933 5102 58 6 0 chr3 67795370 67795995 -159728583 + L1PA6 LINE L1 5526 6154 0 4384 174 84 57 chr3 67795995 67796220 -159728358 + L1MC3 LINE L1 6852 7070 -715 1717 172 10 14 chr3 67796220 67796516 -159728062 - AluJo SINE Alu -17 295 1 4384 174 84 57 chr3 67796516 67797188 -159727390 + L1MC3 LINE L1 7070 7784 -1 1116 272 213 5 chr3 67797195 67797603 -159726975 - MLT1K LTR MaLR -94 494 2 241 300 60 20 chr3 67799336 67799436 -159725142 + L2 LINE L2 3160 3263 -9 210 281 73 0 chr3 67799451 67799533 -159725045 - MIR SINE MIR -86 176 89 222 37 0 0 chr3 67800132 67800159 -159724419 + (A)n Simple_repeat Simple_repeat 1 27 0 248 252 82 54 chr3 67800305 67800452 -159724126 + MLT1L LTR MaLR 330 480 -135 356 267 123 43 chr3 67800965 67801152 -159723426 - MIR SINE MIR -43 219 18 452 127 0 13 chr3 67801266 67801345 -159723233 + (TGGA)n Simple_repeat Simple_repeat 4 81 0 258 32 0 0 chr3 67801570 67801601 -159722977 + (TTAGGG)n Simple_repeat Simple_repeat 6 36 0 1193 225 57 24 chr3 67802370 67802703 -159721875 + MER2 DNA MER2_type 1 344 0 2492 66 3 0 chr3 67802830 67803132 -159721446 - AluY SINE Alu -8 303 1 1664 64 0 5 chr3 67804549 67804753 -159719825 + AluY SINE Alu 102 304 -7 595 317 82 21 chr3 67804795 67805203 -159719375 + LTR16B LTR ERVL 1 464 0 636 289 58 9 chr3 67805203 67805428 -159719150 + HERV16 LTR ERVL 1 236 -4760 2285 53 0 0 chr3 67805452 67805715 -159718863 + AluY SINE Alu 1 263 -48 252 0 0 0 chr3 67806000 67806028 -159718550 + (A)n Simple_repeat Simple_repeat 1 28 0 459 205 12 0 chr3 67806053 67806136 -159718442 + MER21B LTR ERV1 13 96 -767 461 248 32 24 chr3 67806175 67806300 -159718278 + MER21B LTR ERV1 98 223 -640 3943 138 28 49 chr3 67806303 67806993 -159717585 - LTR8 LTR ERV1 0 691 17 2025 130 34 0 chr3 67807992 67808285 -159716293 - AluSq SINE Alu -8 305 3 4347 178 52 16 chr3 67808295 67809307 -159715271 - L1MB8 LINE L1 0 6178 5131 695 196 37 0 chr3 67809307 67809470 -159715108 + L1M4c LINE L1 1251 1419 -4965 997 202 71 38 chr3 67809495 67809688 -159714890 + MLT1C LTR MaLR 184 390 -77 2642 109 5 8 chr3 67809688 67810064 -159714514 - THE1C LTR MaLR 0 375 1 997 202 71 38 chr3 67810064 67810137 -159714441 + MLT1C LTR MaLR 390 459 -8 544 217 26 0 chr3 67810143 67810258 -159714320 - L1M4b LINE L1 -6069 790 673 2005 151 0 3 chr3 67811485 67811776 -159712802 - AluSx SINE Alu -22 290 1 204 337 20 0 chr3 67812105 67812203 -159712375 + (CATATA)n Simple_repeat Simple_repeat 2 101 0 903 47 34 0 chr3 67812261 67812385 -159712193 + MER30B DNA MER1_type 1 112 -78 3547 125 50 2 chr3 67812385 67812955 -159711623 - MER51C LTR ERV1 0 640 1 594 177 0 0 chr3 67812955 67813051 -159711527 + MER30B DNA MER1_type 135 230 0 187 53 26 26 chr3 67813167 67813205 -159711373 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 3936 114 45 22 chr3 67814047 67814685 -159709893 - MER39B LTR ERV1 0 653 1 314 300 133 0 chr3 67816072 67816222 -159708356 + L1ME2 LINE L1 5843 6012 -150 603 222 183 11 chr3 67816261 67816441 -159708137 - MER58A DNA MER1_type -13 211 1 384 229 8 25 chr3 67816457 67816575 -159708003 + L1ME2 LINE L1 6049 6164 0 202 182 0 0 chr3 67816847 67816880 -159707698 - MIR SINE MIR -151 111 79 1800 196 68 26 chr3 67817708 67818167 -159706411 - MLT1D LTR MaLR 0 505 28 1010 267 8 4 chr3 67818980 67819235 -159705343 + MIR SINE MIR 7 262 0 192 318 141 12 chr3 67819295 67819465 -159705113 - L2 LINE L2 -95 3177 2986 721 206 120 5 chr3 67820903 67821087 -159703491 - MER3 DNA MER1_type 0 209 5 2073 133 11 0 chr3 67821287 67821573 -159703005 + AluSx SINE Alu 1 289 -23 32 0 0 0 chr3 67821591 67821623 -159702955 + AT_rich Low_complexity Low_complexity 1 32 0 28 91 0 0 chr3 67822517 67822594 -159701984 + AT_rich Low_complexity Low_complexity 1 77 0 323 277 188 22 chr3 67822637 67822908 -159701670 - L2 LINE L2 -6 3307 2992 775 247 193 39 chr3 67822931 67823320 -159701258 - MLT1L LTR MaLR -13 602 154 * 1155 198 42 0 chr3 67823313 67823550 -159701028 - Cheshire DNA MER1_type -4 2416 2170 1973 148 0 40 chr3 67823592 67823916 -159700662 - AluSx SINE Alu -1 311 1 615 156 44 15 chr3 67823917 67824052 -159700526 - Cheshire DNA MER1_type -231 2189 2051 812 169 60 38 chr3 67824054 67824238 -159700340 - Cheshire DNA MER1_type -2151 269 82 230 288 0 0 chr3 67824385 67824451 -159700127 - L2 LINE L2 -337 2977 2912 1166 246 13 39 chr3 67824527 67824951 -159699627 + L1M4b LINE L1 11 560 -6299 4198 93 29 0 chr3 67825363 67825913 -159698665 - LTR14C LTR ERVK 0 587 22 3855 170 57 26 chr3 67825928 67826003 -159698575 - LTR39 LTR ERV1 0 783 712 1480 189 112 145 chr3 67826003 67826755 -159697823 + LTR8A LTR ERV1 1 727 0 3855 170 57 26 chr3 67826755 67827419 -159697159 - LTR39 LTR ERV1 -71 712 21 1902 160 87 20 chr3 67827468 67827992 -159696586 - MLT2A2 LTR ERVL 0 554 1 21 36 0 0 chr3 67828227 67828255 -159696323 + AT_rich Low_complexity Low_complexity 1 28 0 231 189 38 0 chr3 67828675 67828728 -159695850 - Tigger5 DNA MER2_type -22 2301 2247 * 376 209 95 0 chr3 67828705 67828810 -159695768 - Tigger5 DNA MER2_type -2208 115 1 2255 119 0 6 chr3 67828934 67829245 -159695333 - AluSx SINE Alu -3 309 1 1957 141 25 23 chr3 67830107 67830619 -159693959 - L1MC2 LINE L1 -2 6342 5762 237 178 0 0 chr3 67830627 67830672 -159693906 + T-rich Low_complexity Low_complexity 1 45 0 1363 177 0 4 chr3 67830681 67830907 -159693671 - AluJb SINE Alu -87 225 1 186 280 0 0 chr3 67831810 67831860 -159692718 - L2 LINE L2 -9 3304 3255 485 139 35 0 chr3 67834026 67834112 -159690466 - MER53 DNA DNA -1 188 100 207 204 0 0 chr3 67834146 67834190 -159690388 + (TA)n Simple_repeat Simple_repeat 2 45 0 2296 144 8 5 chr3 67834280 67834668 -159689910 - L1PB1 LINE L1 -3 6148 5760 194 254 30 15 chr3 67836067 67836134 -159688444 - MIR SINE MIR 0 262 195 373 289 48 18 chr3 67836207 67836373 -159688205 - MIR SINE MIR -71 191 21 335 258 113 0 chr3 67837273 67837370 -159687208 - MER5A DNA MER1_type -78 111 4 2096 127 0 10 chr3 67837853 67838153 -159686425 + AluSx SINE Alu 1 297 -15 459 0 0 0 chr3 67838157 67838208 -159686370 + (CA)n Simple_repeat Simple_repeat 2 52 0 900 225 56 5 chr3 67838327 67838540 -159686038 + MER58A DNA MER1_type 1 224 0 376 272 59 7 chr3 67838839 67838975 -159685603 - MIR SINE MIR -40 222 80 2226 238 54 22 chr3 67839682 67840271 -159684307 + MLT1E2 LTR MaLR 19 626 0 26 0 0 0 chr3 67841400 67841426 -159683152 + AT_rich Low_complexity Low_complexity 1 26 0 3025 152 82 25 chr3 67841460 67842059 -159682519 - L1MA9 LINE L1 0 6312 5680 491 38 0 89 chr3 67842957 67843036 -159681542 + L1PA10 LINE L1 6097 6168 0 1134 286 98 35 chr3 67843232 67843782 -159680796 - L1ME3A LINE L1 -327 5843 5259 850 194 158 16 chr3 67843786 67844039 -159680539 - MER33 DNA MER1_type -4 320 32 677 320 101 16 chr3 67844089 67844651 -159679927 - L1ME3A LINE L1 -921 5225 4616 467 259 80 25 chr3 67844682 67844844 -159679734 + MIR SINE MIR 79 249 -13 633 213 86 23 chr3 67845261 67845435 -159679143 - MER53 DNA DNA 0 189 5 266 267 0 0 chr3 67845498 67845558 -159679020 - MIR3 SINE MIR -37 171 112 1112 180 92 18 chr3 67847267 67847551 -159677027 + MER113 DNA MER1_type? 6 310 -211 472 294 57 14 chr3 67847569 67847780 -159676798 + LTR33 LTR ERVL 16 235 -286 429 268 77 22 chr3 67847829 67848012 -159676566 + LTR33 LTR ERVL 329 521 0 311 211 42 0 chr3 67848025 67848096 -159676482 + MER113 DNA MER1_type? 331 404 -117 2034 116 14 7 chr3 67848594 67848878 -159675700 - AluSc SINE Alu -21 288 3 283 333 61 8 chr3 67849003 67849135 -159675443 - L2 LINE L2 0 3313 3175 336 283 192 32 chr3 67849305 67849524 -159675054 + MIR SINE MIR 2 255 -7 413 299 50 17 chr3 67850348 67850544 -159674034 - MIR SINE MIR -58 204 3 281 259 199 30 chr3 67850815 67850946 -159673632 + L2 LINE L2 3161 3313 0 247 286 32 0 chr3 67852229 67852292 -159672286 + MIR SINE MIR 119 183 -79 858 200 65 30 chr3 67852680 67852880 -159671698 - L1MB2 LINE L1 -7 6164 5958 21 0 0 0 chr3 67853358 67853379 -159671199 + AT_rich Low_complexity Low_complexity 1 21 0 716 305 110 42 chr3 67853964 67854691 -159669887 - L2 LINE L2 0 3313 2519 1538 205 70 27 chr3 67854691 67855130 -159669448 + MLT2D LTR ERVL 1 455 -9 1136 174 26 66 chr3 67855176 67855480 -159669098 - MER33 DNA MER1_type -2 322 31 350 308 84 15 chr3 67857003 67857202 -159667376 - MIR SINE MIR -19 243 24 1950 197 100 23 chr3 67858036 67858477 -159666101 + MLT2B1 LTR ERVL 1 475 -45 235 148 19 37 chr3 67858510 67858564 -159666014 + MLT2C2 LTR ERVL 404 456 -8 2399 93 0 9 chr3 67859265 67859586 -159664992 - L1PA13 LINE L1 0 6163 5846 21 0 0 0 chr3 67859776 67859797 -159664781 + AT_rich Low_complexity Low_complexity 1 21 0 410 277 182 7 chr3 67859883 67860031 -159664547 + MER5A DNA MER1_type 10 183 -6 306 303 30 0 chr3 67860771 67860870 -159663708 + MLT1K LTR MaLR 141 242 -346 1267 103 74 25 chr3 67860913 67860939 -159663639 - MSTA LTR MaLR 0 428 405 7730 48 3 1 chr3 67860939 67862049 -159662529 + L1PA5 LINE L1 5040 6150 -4 1267 103 74 25 chr3 67862049 67862225 -159662353 - MSTA LTR MaLR -23 405 216 2158 236 56 11 chr3 67862344 67862866 -159661712 + L1MD3 LINE L1 7450 7994 -1 272 237 62 62 chr3 67863654 67863781 -159660797 + MLT1H LTR MaLR 441 549 0 184 212 12 165 chr3 67864584 67864669 -159659909 + L2 LINE L2 3241 3312 -1 313 319 17 8 chr3 67865122 67865241 -159659337 - MER5A DNA MER1_type -43 146 27 1560 152 105 50 chr3 67865436 67865779 -159658799 + MLT1A1 LTR MaLR 4 365 0 410 268 196 36 chr3 67868258 67868534 -159656044 + L2 LINE L2 2920 3239 -74 210 71 0 0 chr3 67868670 67868698 -159655880 + (TC)n Simple_repeat Simple_repeat 1 28 0 195 196 87 0 chr3 67869059 67869105 -159655473 - MIR SINE MIR -102 160 111 670 167 56 7 chr3 67869386 67869530 -159655048 - MER58 DNA MER1_type 0 2420 2270 453 235 82 0 chr3 67869511 67869609 -159654969 - MER58 DNA MER1_type -235 106 1 * 190 127 0 73 chr3 67869669 67869724 -159654854 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 9661 36 6 1 chr3 67870371 67870388 -159654190 + L1P LINE L1 3394 3409 -2737 6285 110 38 0 chr3 67870388 67870959 -159653619 - L1PA13 LINE L1 -4 6159 5559 2405 88 0 3 chr3 67870959 67871267 -159653311 - AluY SINE Alu -4 307 1 6285 110 38 0 chr3 67871267 67871668 -159652910 - L1PA13 LINE L1 -604 5559 5175 * 8186 23 0 0 chr3 67871666 67873282 -159651296 - L1PA4 LINE L1 0 6155 4538 9661 36 6 1 chr3 67871668 67874414 -159650164 + L1PA4 LINE L1 3409 4548 -1598 * 9986 152 11 4 chr3 67874412 67876074 -159648504 - L1PA13 LINE L1 -955 5191 3518 890 282 63 30 chr3 67876137 67876531 -159648047 + MLT1I LTR MaLR 1 407 -2 417 276 46 61 chr3 67878509 67878770 -159645808 + LTR16C LTR ERVL 235 491 0 1288 143 56 0 chr3 67879784 67880015 -159644563 + L1MA2 LINE L1 6061 6304 0 708 206 7 14 chr3 67880509 67880655 -159643923 - L1MB5 LINE L1 -9 6165 6021 219 257 0 81 chr3 67881053 67881127 -159643451 + MIR SINE MIR 12 79 -183 285 256 105 23 chr3 67881262 67881348 -159643230 + MIR SINE MIR 106 198 -64 266 244 8 142 chr3 67882086 67882140 -159642438 - MER103 DNA DNA -2 164 135 2069 125 6 16 chr3 67882140 67882452 -159642126 - AluSc SINE Alu 0 309 1 266 244 8 142 chr3 67882452 67882524 -159642054 - MER103 DNA DNA -31 135 55 305 258 98 61 chr3 67882919 67883082 -159641496 - Charlie8 DNA MER1_type -2209 208 40 1123 279 104 37 chr3 67883249 67883500 -159641078 + L2 LINE L2 1892 2125 -1189 3476 98 2 21 chr3 67883500 67883982 -159640596 - L1PA13 LINE L1 0 6163 5691 1123 279 104 37 chr3 67883982 67884218 -159640360 + L2 LINE L2 2125 2412 -902 688 289 128 30 chr3 67884247 67884545 -159640033 + L2 LINE L2 2987 3313 0 288 262 136 19 chr3 67885579 67885682 -159638896 - MER117 DNA MER1_type -61 136 22 407 233 34 18 chr3 67886846 67886992 -159637586 + MIR SINE MIR 21 162 -63 228 371 63 24 chr3 67887438 67887643 -159636935 + L2 LINE L2 2869 3081 -191 1781 195 58 0 chr3 67887718 67888046 -159636532 + MER7A DNA MER2_type 2 346 0 454 320 119 5 chr3 67888082 67888301 -159636277 - MIR SINE MIR -13 249 6 237 368 60 15 chr3 67888332 67888465 -159636113 + L2 LINE L2 3112 3250 -22 503 310 7 0 chr3 67889323 67889468 -159635110 + LTR16B LTR ERVL 2 147 -317 307 250 69 0 chr3 67890563 67890635 -159633943 - MIR SINE MIR -116 146 70 213 339 0 0 chr3 67891003 67891065 -159633513 - L2 LINE L2 -8 3305 3244 273 273 0 13 chr3 67891136 67891213 -159633365 + MER5A DNA MER1_type 43 118 -71 6438 82 38 0 chr3 67891594 67892390 -159632188 + LTR12 LTR ERV1 1 826 0 186 246 15 92 chr3 67892687 67892752 -159631826 - L2 LINE L2 -5 3267 3208 585 265 66 40 chr3 67893618 67893951 -159630627 - L1ME4a LINE L1 -203 5918 5615 799 271 37 0 chr3 67895607 67895821 -159628757 - MER58A DNA MER1_type 0 224 3 642 284 47 35 chr3 67895824 67896056 -159628522 + MIR SINE MIR 18 252 -10 23 0 0 0 chr3 67896759 67896782 -159627796 + AT_rich Low_complexity Low_complexity 1 23 0 452 232 0 30 chr3 67897159 67897258 -159627320 + MER5A DNA MER1_type 10 105 -84 4206 101 27 2 chr3 67899205 67899829 -159624749 - MER51C LTR ERV1 0 640 1 535 358 64 48 chr3 67900085 67900523 -159624055 + L2 LINE L2 2828 3272 0 1855 127 4 4 chr3 67900960 67901227 -159623351 - AluSx SINE Alu -11 301 35 207 301 107 0 chr3 67901519 67901622 -159622956 + L2 LINE L2 3159 3272 0 288 219 16 154 chr3 67901734 67901857 -159622721 - MIR SINE MIR -105 157 52 2293 108 7 0 chr3 67901865 67902171 -159622407 - AluSc SINE Alu -1 308 1 408 331 37 12 chr3 67902214 67902377 -159622201 - MIR SINE MIR -94 168 2 890 231 0 13 chr3 67903617 67903842 -159620736 - L1MA4 LINE L1 -1 6299 6078 1733 212 3 0 chr3 67904797 67905136 -159619442 + Tigger7 DNA MER2_type 5 344 -2143 668 162 56 7 chr3 67905131 67905273 -159619305 + Tigger7 DNA MER2_type 2339 2487 0 * 572 327 82 24 chr3 67905330 67905722 -159618856 - L2 LINE L2 -189 3083 2661 1255 176 48 21 chr3 67905722 67906058 -159618520 + L1MB4 LINE L1 4455 4799 -1347 1053 145 88 0 chr3 67906105 67906298 -159618280 + MER46A DNA MER2_type 26 235 -1 4107 164 57 27 chr3 67906307 67907588 -159616990 + L1MB4 LINE L1 4860 6179 -1 684 204 68 6 chr3 67909125 67909287 -159615291 + MLT1B LTR MaLR 2 173 -217 258 56 0 0 chr3 67909310 67909346 -159615232 + (TC)n Simple_repeat Simple_repeat 1 36 0 232 191 0 0 chr3 67909495 67909537 -159615041 + MLT1B LTR MaLR 349 390 0 210 268 0 125 chr3 67909548 67909660 -159614918 - MIR SINE MIR -68 194 97 2045 148 10 39 chr3 67910630 67911016 -159613562 - THE1C LTR MaLR 0 375 1 576 218 112 21 chr3 67911429 67911604 -159612974 - MIR3 SINE MIR 0 208 21 816 282 84 0 chr3 67914565 67914792 -159609786 + MIR SINE MIR 2 247 -15 560 339 89 0 chr3 67914811 67915047 -159609531 - MIR SINE MIR -4 258 2 923 140 0 6 chr3 67915118 67915282 -159609296 + L1MB4 LINE L1 6014 6176 -4 234 219 73 7 chr3 67918023 67918174 -159606404 + (TTGTG)n Simple_repeat Simple_repeat 5 165 0 789 201 0 24 chr3 67919135 67919299 -159605279 + MLT1B LTR MaLR 231 390 0 204 266 0 133 chr3 67919310 67919423 -159605155 - MIR SINE MIR -68 194 97 2064 145 10 39 chr3 67920392 67920778 -159603800 - THE1C LTR MaLR 0 375 1 576 218 112 21 chr3 67921192 67921367 -159603211 - MIR3 SINE MIR 0 208 21 816 282 84 0 chr3 67924327 67924554 -159600024 + MIR SINE MIR 2 247 -15 560 339 89 0 chr3 67924573 67924809 -159599769 - MIR SINE MIR -4 258 2 923 140 0 6 chr3 67924880 67925044 -159599534 + L1MB4 LINE L1 6014 6176 -4 476 153 0 0 chr3 67927921 67927993 -159596585 + FLAM SINE Alu 46 117 -26 777 241 0 0 chr3 67928010 67928176 -159596402 - Charlie1a DNA MER1_type -983 472 307 299 24 0 24 chr3 67928230 67928271 -159596307 + (TCCC)n Simple_repeat Simple_repeat 3 42 0 351 65 0 0 chr3 67928271 67928317 -159596261 + (TG)n Simple_repeat Simple_repeat 1 46 0 478 228 34 20 chr3 67928317 67928466 -159596112 - Charlie1a DNA MER1_type -1261 194 44 290 252 0 18 chr3 67929968 67930079 -159594499 + CT-rich Low_complexity Low_complexity 3 111 0 267 242 0 30 chr3 67930584 67930650 -159593928 + GA-rich Low_complexity Low_complexity 1 64 0 863 44 0 9 chr3 67931043 67931156 -159593422 + (TTTC)n Simple_repeat Simple_repeat 1 112 0 223 270 87 43 chr3 67931446 67931561 -159593017 - L2 LINE L2 0 3272 3153 945 218 0 32 chr3 67931992 67932208 -159592370 - MER3 DNA MER1_type 0 209 1 574 284 92 81 chr3 67932220 67932579 -159591999 - L2 LINE L2 -1 3271 2909 270 0 0 0 chr3 67934210 67934240 -159590338 + (TG)n Simple_repeat Simple_repeat 1 30 0 1247 162 19 98 chr3 67934953 67935312 -159589266 + MLT1B LTR MaLR 60 390 0 29 28 0 0 chr3 67936298 67936334 -159588244 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr3 67936994 67937023 -159587555 + AT_rich Low_complexity Low_complexity 1 29 0 322 166 7 159 chr3 67937447 67937592 -159586986 + LTR67 LTR ERVL 432 554 -3 572 305 43 17 chr3 67937819 67938052 -159586526 - MIR SINE MIR -8 254 16 480 324 122 45 chr3 67939918 67940254 -159584324 - L2 LINE L2 -1 3271 2910 21 0 0 0 chr3 67940869 67940890 -159583688 + AT_rich Low_complexity Low_complexity 1 21 0 553 287 42 29 chr3 67941221 67941654 -159582924 - L1ME2 LINE L1 -287 5877 5444 384 230 115 0 chr3 67941674 67941787 -159582791 - LTR33A LTR ERVL -35 488 363 384 279 58 58 chr3 67941792 67942018 -159582560 - LTR33A LTR ERVL -209 314 89 263 207 85 0 chr3 67942079 67942161 -159582417 - L1P5 LINE L1 -695 5461 5373 362 284 119 21 chr3 67942198 67942434 -159582144 - L1ME2 LINE L1 -816 5330 5072 620 325 93 22 chr3 67942655 67943551 -159581027 - L1ME2 LINE L1 -1308 4838 3880 216 0 0 0 chr3 67944570 67944594 -159579984 + (CA)n Simple_repeat Simple_repeat 1 24 0 396 59 0 0 chr3 67944919 67944970 -159579608 + (TG)n Simple_repeat Simple_repeat 1 51 0 186 71 0 0 chr3 67945074 67945102 -159579476 + (CAA)n Simple_repeat Simple_repeat 2 29 0 560 323 82 5 chr3 67945675 67945895 -159578683 + MIR SINE MIR 14 250 -12 595 316 102 33 chr3 67945977 67946436 -159578142 - MLT1J LTR MaLR -20 491 1 201 243 0 0 chr3 67946483 67946520 -159578058 + polypurine Low_complexity Low_complexity 2 38 0 276 343 10 10 chr3 67946654 67946756 -159577822 + MIR SINE MIR 3 104 -158 * 347 252 126 8 chr3 67946747 67946874 -159577704 + L2 LINE L2 3172 3313 0 193 291 45 27 chr3 67946877 67946987 -159577591 + MIR SINE MIR 92 203 -59 226 318 167 1 chr3 67949127 67949248 -159575330 - MIR SINE MIR -78 130 1 564 270 55 46 chr3 67949321 67949558 -159575020 - MIR SINE MIR -6 256 18 189 275 66 44 chr3 67949935 67950026 -159574552 - MIR SINE MIR -143 119 27 1645 262 91 14 chr3 67950151 67950579 -159573999 - MLT1E LTR MaLR -132 461 1 329 322 8 17 chr3 67951595 67951713 -159572865 - MIR3 SINE MIR -7 201 85 582 208 260 52 chr3 67951966 67951997 -159572581 + MLT1I LTR MaLR 104 127 -282 2562 161 26 2 chr3 67951997 67952413 -159572165 - MSTA LTR MaLR 0 428 3 582 208 260 52 chr3 67952413 67952631 -159571947 + MLT1I LTR MaLR 127 405 -4 306 347 102 32 chr3 67953190 67953475 -159571103 + L2 LINE L2 2965 3269 -3 1766 171 99 38 chr3 67954418 67954811 -159569767 - MSTB1 LTR MaLR 0 432 16 2316 147 42 34 chr3 67955826 67956367 -159568211 + MLT2A2 LTR ERVL 1 546 -8 6118 80 7 5 chr3 67956814 67957632 -159566946 - L1PA8 LINE L1 0 6172 5353 31 0 0 0 chr3 67957655 67957686 -159566892 + AT_rich Low_complexity Low_complexity 1 31 0 309 125 0 0 chr3 67958084 67958132 -159566446 - MLT2A2 LTR ERVL -8 445 398 319 333 114 48 chr3 67959627 67959766 -159564812 + L2 LINE L2 2453 2581 -732 2060 176 52 35 chr3 67959766 67960225 -159564353 - MLT1C LTR MaLR 0 467 1 319 333 114 48 chr3 67960225 67960690 -159563888 + L2 LINE L2 2581 3190 -123 857 242 14 14 chr3 67960690 67960905 -159563673 + MER58C DNA MER1_type 1 215 0 319 333 114 48 chr3 67960905 67961038 -159563540 + L2 LINE L2 3190 3313 0 1086 98 0 0 chr3 67961329 67961462 -159563116 + AluSg SINE Alu 1 133 -177 2091 125 0 0 chr3 67961462 67961767 -159562811 + AluSg SINE Alu 1 305 0 282 218 48 109 chr3 67963032 67963197 -159561381 + L2 LINE L2 3118 3272 -41 22 0 0 0 chr3 67963452 67963474 -159561104 + AT_rich Low_complexity Low_complexity 1 22 0 2833 178 43 20 chr3 67963735 67964273 -159560305 - MER44D DNA MER2_type 0 605 1 1083 269 4 0 chr3 67964311 67964549 -159560029 + MIR SINE MIR 8 246 -16 2593 36 13 7 chr3 67964691 67964998 -159559580 + AluY SINE Alu 1 309 -2 271 272 141 0 chr3 67965973 67966065 -159558513 - MIR SINE MIR 0 262 158 624 235 106 11 chr3 67966307 67966486 -159558092 - MIR SINE MIR 0 262 67 1204 159 33 0 chr3 67966908 67967122 -159557456 + L1MA5 LINE L1 6080 6300 0 288 154 0 0 chr3 67967880 67967932 -159556646 + CT-rich Low_complexity Low_complexity 2 53 0 306 0 0 0 chr3 67967934 67967968 -159556610 + (CA)n Simple_repeat Simple_repeat 1 34 0 836 267 78 18 chr3 67969263 67969649 -159554929 + L1MC4 LINE L1 7627 8035 -7 566 304 92 18 chr3 67970825 67971042 -159553536 - MIR SINE MIR -19 243 11 2454 111 36 28 chr3 67972582 67972942 -159551636 - THE1B LTR MaLR 0 364 2 333 0 0 0 chr3 67973839 67973876 -159550702 + (CA)n Simple_repeat Simple_repeat 2 38 0 2360 92 0 0 chr3 67973998 67974290 -159550288 + AluSg SINE Alu 1 292 -18 2099 126 0 26 chr3 67974292 67974601 -159549977 + AluSq SINE Alu 1 301 -12 617 111 0 65 chr3 67974723 67974831 -159549747 + AluSg/x SINE Alu 210 310 -2 21 57 0 0 chr3 67976677 67976712 -159547866 + AT_rich Low_complexity Low_complexity 1 35 0 356 311 85 24 chr3 67976796 67977172 -159547406 + HAL1b LINE L1 59 457 -891 5899 175 42 6 chr3 67977245 67978705 -159545873 + L1M1 LINE L1 4169 5673 -627 225 271 0 0 chr3 67978691 67978750 -159545828 + L1MC4 LINE L1 6644 6702 -1340 * 245 235 0 0 chr3 67978718 67978769 -159545809 - L1MC4 LINE L1 -1340 6702 6652 871 135 0 8 chr3 67978771 67978904 -159545674 - AluSg/x SINE Alu -14 298 167 245 181 42 97 chr3 67978924 67978996 -159545582 + Alu SINE Alu 1 50 -253 515 276 12 37 chr3 67979130 67979555 -159545023 + G-rich Low_complexity Low_complexity 1 414 0 267 185 0 46 chr3 67979678 67979743 -159544835 - LTR66 LTR ERVL -155 455 394 871 135 0 8 chr3 67979769 67979902 -159544676 - AluSg/x SINE Alu -14 298 167 738 190 76 19 chr3 67979923 67980081 -159544497 + FRAM SINE Alu 1 167 -9 236 75 75 0 chr3 67980089 67980129 -159544449 + L1MB2 LINE L1 6129 6171 0 733 233 98 50 chr3 67980535 67980853 -159543725 + L1MC5 LINE L1 7150 7482 -479 607 275 57 49 chr3 67981030 67981274 -159543304 - MIR SINE MIR -3 259 14 1139 149 15 46 chr3 67983136 67983331 -159541247 - AluSg/x SINE Alu -12 300 112 209 310 70 0 chr3 67983632 67983703 -159540875 + MIR SINE MIR 53 128 -134 527 278 6 6 chr3 67983755 67983935 -159540643 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 257 282 36 27 chr3 67984000 67984110 -159540468 - HAL1b LINE L1 -265 1083 973 420 268 168 23 chr3 67985892 67986112 -159538466 + MIR SINE MIR 11 262 0 2443 117 19 32 chr3 67986431 67986800 -159537778 + THE1B LTR MaLR 1 364 0 1017 184 86 41 chr3 67988291 67988435 -159536143 - MLT1A1 LTR MaLR -109 256 95 2074 97 23 20 chr3 67988435 67988734 -159535844 - AluSx SINE Alu -12 300 1 1017 184 86 41 chr3 67988734 67988834 -159535744 - MLT1A1 LTR MaLR -270 95 1 514 296 8 0 chr3 67991169 67991294 -159533284 - MIR SINE MIR -113 149 24 2477 99 12 6 chr3 67993228 67993571 -159531007 - L1PA12 LINE L1 -10 6158 5814 417 314 8 0 chr3 67994442 67994566 -159530012 - MIR SINE MIR -66 196 72 1944 89 4 41 chr3 67995034 67995305 -159529273 + AluSx SINE Alu 42 302 -10 23 0 0 0 chr3 67996954 67996977 -159527601 + AT_rich Low_complexity Low_complexity 1 23 0 195 239 65 0 chr3 67998628 67998674 -159525904 - MIR SINE MIR -95 113 65 525 267 105 11 chr3 67998778 67998969 -159525609 + MIR SINE MIR 20 228 -34 1503 202 32 76 chr3 68000655 68001090 -159523488 + L1MB7 LINE L1 5760 6175 -9 263 119 24 0 chr3 68002130 68002172 -159522406 + MER3 DNA MER1_type 3 45 -164 247 200 0 0 chr3 68002180 68002220 -159522358 - Charlie5 DNA MER1_type -2572 40 1 1130 65 7 0 chr3 68002311 68002450 -159522128 + AluY SINE Alu 145 284 -27 725 319 102 38 chr3 68002483 68003306 -159521272 - L2 LINE L2 -8 3305 2427 29 0 0 0 chr3 68003528 68003557 -159521021 + AT_rich Low_complexity Low_complexity 1 29 0 316 268 24 49 chr3 68004123 68004246 -159520332 - MIR SINE MIR -17 245 126 296 397 26 13 chr3 68004524 68004680 -159519898 - MIR3 SINE MIR -48 160 3 498 256 15 8 chr3 68004757 68004890 -159519688 + MER117 DNA MER1_type 55 188 -9 1035 182 6 0 chr3 68005006 68005171 -159519407 + FAM SINE Alu 1 166 -9 42704 57 7 2 chr3 68005357 68011455 -159513123 + L1PA5 LINE L1 11 6141 -13 24 0 0 0 chr3 68011455 68011479 -159513099 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 68012149 68012172 -159512406 + AT_rich Low_complexity Low_complexity 1 23 0 183 42 0 0 chr3 68012440 68012464 -159512114 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 269 259 83 93 chr3 68013026 68013219 -159511359 + MIR SINE MIR 37 227 -35 1366 205 153 11 chr3 68013516 68013863 -159510715 + MSTD LTR MaLR 1 396 0 216 0 0 0 chr3 68013902 68013926 -159510652 + (A)n Simple_repeat Simple_repeat 1 24 0 398 290 96 70 chr3 68014122 68014258 -159510320 - L1MEd LINE L1 -5042 1077 946 1297 211 13 4 chr3 68014258 68014495 -159510083 + MER8 DNA MER2_type 1 239 0 398 290 96 70 chr3 68014495 68014713 -159509865 - L1MEd LINE L1 -5173 946 714 42678 57 7 2 chr3 68015749 68021847 -159502731 - L1PA5 LINE L1 -13 6141 11 1035 182 6 0 chr3 68022033 68022198 -159502380 - FAM SINE Alu -9 166 1 498 256 15 8 chr3 68022314 68022447 -159502131 - MER117 DNA MER1_type -9 188 55 296 397 26 13 chr3 68022524 68022680 -159501898 + MIR3 SINE MIR 3 160 -48 316 268 24 49 chr3 68022958 68023081 -159501497 + MIR SINE MIR 126 245 -17 29 0 0 0 chr3 68023646 68023675 -159500903 + AT_rich Low_complexity Low_complexity 1 29 0 314 317 48 48 chr3 68023897 68024146 -159500432 + L2 LINE L2 2427 2675 -639 308 56 0 56 chr3 68024435 68024489 -159500089 - L1MB4 LINE L1 -4 6176 6126 269 259 83 93 chr3 68024704 68024897 -159499681 + MIR SINE MIR 37 227 -35 1366 205 153 11 chr3 68025194 68025541 -159499037 + MSTD LTR MaLR 1 396 0 225 0 0 0 chr3 68025579 68025604 -159498974 + (A)n Simple_repeat Simple_repeat 1 25 0 398 290 96 70 chr3 68025800 68025936 -159498642 - L1MEd LINE L1 -5042 1077 946 1297 211 13 4 chr3 68025936 68026173 -159498405 + MER8 DNA MER2_type 1 239 0 398 290 96 70 chr3 68026173 68026391 -159498187 - L1MEd LINE L1 -5173 946 714 335 308 70 0 chr3 68027755 68027861 -159496717 - MER96B DNA MER1_type? -3 414 292 603 137 0 10 chr3 68027861 68027963 -159496615 + L1MA7 LINE L1 6184 6284 -7 335 308 70 0 chr3 68027963 68028012 -159496566 - MER96B DNA MER1_type? -125 292 248 1159 164 50 0 chr3 68028142 68028343 -159496235 + MER2 DNA MER2_type 1 211 -134 822 138 100 12 chr3 68028408 68028568 -159496010 - MER96B DNA MER1_type? -243 174 1 365 291 173 0 chr3 68028649 68028776 -159495802 + MIR SINE MIR 82 230 -32 2078 200 6 6 chr3 68028789 68029154 -159495424 - MLT1A1 LTR MaLR 0 365 1 630 178 89 14 chr3 68029246 68029392 -159495186 - L1MB3 LINE L1 -1 6182 6026 2072 187 109 0 chr3 68029745 68030184 -159494394 - MER63 DNA MER1_type -1 1059 573 796 163 148 15 chr3 68030211 68030414 -159494164 - MER63 DNA MER1_type -831 230 1 15924 35 8 0 chr3 68030462 68033031 -159491547 + L1PA5 LINE L1 3579 6154 0 446 246 239 12 chr3 68033222 68033389 -159491189 - MIR SINE MIR -5 257 53 367 355 46 9 chr3 68034753 68034970 -159489608 - MIR SINE MIR -29 233 9 248 281 85 98 chr3 68034973 68035179 -159489399 + MIR SINE MIR 16 220 -42 2173 122 0 0 chr3 68035179 68035475 -159489103 + AluSg SINE Alu 1 296 -14 248 281 85 98 chr3 68035475 68035503 -159489075 + MIR SINE MIR 220 247 -15 423 0 0 0 chr3 68036872 68036919 -159487659 + (TG)n Simple_repeat Simple_repeat 2 48 0 591 255 13 89 chr3 68037325 68037560 -159487018 - MIR SINE MIR -14 248 32 834 202 94 25 chr3 68037562 68037765 -159486813 + MER20 DNA MER1_type 3 219 0 338 280 254 0 chr3 68038544 68038662 -159485916 + MER5A DNA MER1_type 13 160 -29 349 260 49 32 chr3 68039608 68039731 -159484847 - Charlie8 DNA MER1_type -2259 158 34 249 280 54 32 chr3 68040527 68040620 -159483958 + MIR3 SINE MIR 67 161 -47 1412 180 18 151 chr3 68041085 68041529 -159483049 - MSTD LTR MaLR -11 385 1 2437 61 6 29 chr3 68041586 68041899 -159482679 + AluY SINE Alu 1 306 -5 3565 226 35 35 chr3 68042223 68043033 -159481545 - MER21B LTR ERV1 -11 852 43 347 222 0 42 chr3 68043038 68043110 -159481468 - MER21B LTR ERV1 -775 88 20 273 267 50 30 chr3 68043112 68043213 -159481365 - MER21B LTR ERV1 -760 103 1 442 265 134 40 chr3 68043430 68043728 -159480850 - L2 LINE L2 -52 3261 2936 279 261 180 0 chr3 68043796 68043907 -159480671 - L2 LINE L2 0 3313 3183 942 235 59 5 chr3 68044372 68044593 -159479985 - MIR SINE MIR -11 251 19 255 345 28 55 chr3 68045661 68045806 -159478772 - MIR SINE MIR -121 141 1 1850 175 65 40 chr3 68045938 68046292 -159478286 + L1MB2 LINE L1 5714 6058 -113 1979 168 55 0 chr3 68046292 68046620 -159477958 + MER7A DNA MER2_type 3 346 0 1850 175 65 40 chr3 68046620 68046666 -159477912 + L1MB2 LINE L1 6058 6101 -70 2149 132 0 7 chr3 68046666 68046970 -159477608 + AluSx SINE Alu 1 302 -10 1850 175 65 40 chr3 68046970 68047013 -159477565 + L1MB2 LINE L1 6101 6169 -2 244 284 74 58 chr3 68047023 68047280 -159477298 - L1ME4a LINE L1 -65 6056 5796 241 308 50 8 chr3 68047363 68047483 -159477095 - L1ME4a LINE L1 -454 5667 5543 214 158 0 26 chr3 68048661 68048699 -159475879 + CT-rich Low_complexity Low_complexity 4 40 0 575 266 83 0 chr3 68048702 68048871 -159475707 - MIR SINE MIR -5 257 75 387 287 99 22 chr3 68049165 68049346 -159475232 + MIR SINE MIR 3 197 -65 2510 77 0 3 chr3 68049391 68049703 -159474875 + AluY SINE Alu 1 311 0 255 114 0 0 chr3 68049745 68049789 -159474789 + (CAT)n Simple_repeat Simple_repeat 2 45 0 714 265 39 21 chr3 68050211 68050445 -159474133 - MIR SINE MIR -13 249 12 2471 74 3 3 chr3 68051044 68051355 -159473223 + AluY SINE Alu 1 311 0 269 250 47 62 chr3 68051401 68051529 -159473049 - L2 LINE L2 -80 3233 3108 614 230 109 17 chr3 68051543 68051717 -159472861 + MLT1D LTR MaLR 3 192 -313 1982 299 34 25 chr3 68051729 68052372 -159472206 + L1M2c LINE L1 9 657 -6132 4188 222 41 6 chr3 68052462 68053610 -159470968 + L1M2c LINE L1 1232 2396 -4393 514 179 48 31 chr3 68053610 68053741 -159470837 + MLT1B LTR MaLR 274 390 0 1583 318 114 31 chr3 68053745 68054107 -159470471 - L2 LINE L2 -240 3073 2743 2356 101 0 0 chr3 68054107 68054404 -159470174 - AluSg SINE Alu -13 297 1 1583 318 114 31 chr3 68054404 68055063 -159469515 - L2 LINE L2 -570 2743 1968 420 261 15 8 chr3 68055125 68055259 -159469319 + MER117 DNA MER1_type 7 141 -56 233 303 101 34 chr3 68055540 68055659 -159468919 + MIR SINE MIR 29 155 -107 1742 148 46 33 chr3 68056367 68056555 -159468023 - AluJo SINE Alu 0 312 117 249 33 0 0 chr3 68056555 68056585 -159467993 + (TTA)n Simple_repeat Simple_repeat 2 31 0 1742 148 46 33 chr3 68056585 68056699 -159467879 - AluJo SINE Alu -195 117 6 243 268 28 42 chr3 68056943 68057014 -159467564 - MIR3 SINE MIR -137 71 2 237 325 0 12 chr3 68057014 68057094 -159467484 + CT-rich Low_complexity Low_complexity 1 79 0 415 287 60 31 chr3 68058774 68058994 -159465584 + MIR SINE MIR 6 230 -32 4721 173 20 31 chr3 68059296 68059341 -159465237 - L1MB4 LINE L1 0 6180 6136 2154 133 0 0 chr3 68059341 68059635 -159464943 - AluSc SINE Alu -15 294 1 4721 173 20 31 chr3 68059635 68060608 -159463970 - L1MB4 LINE L1 -44 6136 5188 285 29 0 0 chr3 68061916 68061950 -159462628 + (A)n Simple_repeat Simple_repeat 1 34 0 198 0 0 0 chr3 68062123 68062145 -159462433 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 508 290 53 39 chr3 68062844 68063051 -159461527 + MIR SINE MIR 2 211 -51 506 265 194 18 chr3 68063739 68063909 -159460669 + MIR SINE MIR 13 212 -50 620 274 204 32 chr3 68064897 68065427 -159459151 - L2 LINE L2 -2 3311 2679 189 176 0 0 chr3 68066033 68066067 -159458511 + L2 LINE L2 3219 3252 -20 327 323 132 45 chr3 68066189 68066545 -159458033 - L2 LINE L2 -2356 958 572 352 254 131 25 chr3 68066617 68066739 -159457839 + L2 LINE L2 3163 3297 -16 1156 30 0 0 chr3 68067310 68067445 -159457133 + AluY SINE Alu 173 307 -4 290 167 87 0 chr3 68068244 68068299 -159456279 + Alu SINE Alu 241 293 -9 434 301 113 25 chr3 68068344 68068547 -159456031 + MIR SINE MIR 29 249 -13 299 332 32 21 chr3 68068687 68068874 -159455704 - L2 LINE L2 -213 3059 2871 390 299 11 64 chr3 68068926 68068984 -159455594 - L2 LINE L2 -1269 2045 1985 1939 161 3 7 chr3 68068984 68069289 -159455289 + AluJb SINE Alu 1 304 -8 390 299 11 64 chr3 68069289 68069417 -159455161 - L2 LINE L2 -1329 1985 1869 277 326 0 10 chr3 68069663 68069761 -159454817 + (TTCA)n Simple_repeat Simple_repeat 1 97 0 316 323 69 15 chr3 68071026 68071156 -159453422 - MIR SINE MIR -64 198 62 1797 194 0 6 chr3 68071247 68071561 -159453017 - AluJo SINE Alu 0 312 1 932 310 105 8 chr3 68072078 68072449 -159452129 + L2 LINE L2 2861 3267 -5 1263 264 110 56 chr3 68072501 68073019 -159451559 - MLT1H LTR MaLR -3 546 1 714 281 64 28 chr3 68073448 68073767 -159450811 + L1MC4a LINE L1 5522 5866 -300 429 20 0 0 chr3 68073820 68073870 -159450708 + (TG)n Simple_repeat Simple_repeat 2 51 0 1043 212 141 0 chr3 68074606 68074889 -159449689 - MER33 DNA MER1_type 0 324 2 2212 120 0 0 chr3 68075014 68075313 -159449265 + AluSx SINE Alu 1 299 -13 25 0 0 0 chr3 68075313 68075338 -159449240 + AT_rich Low_complexity Low_complexity 1 25 0 804 221 23 12 chr3 68075349 68075521 -159449057 + FRAM SINE Alu 2 175 -1 1850 175 0 22 chr3 68075755 68076069 -159448509 + AluJb SINE Alu 1 307 -5 362 353 59 6 chr3 68076441 68076611 -159447967 + MIR3 SINE MIR 20 198 -10 838 299 68 33 chr3 68076910 68077758 -159446820 - L1ME4a LINE L1 -104 6017 5123 303 234 0 53 chr3 68078170 68078264 -159446314 + CT-rich Low_complexity Low_complexity 4 92 0 326 321 9 19 chr3 68078273 68078379 -159446199 - L2 LINE L2 -17 3296 3192 557 333 43 17 chr3 68078438 68078669 -159445909 + MIR SINE MIR 14 250 -12 259 226 128 90 chr3 68078639 68078772 -159445806 - MIR SINE MIR -8 254 117 * 281 281 12 0 chr3 68078861 68078943 -159445635 + MER113 DNA MER1_type? 42 124 -397 263 277 31 0 chr3 68079501 68079566 -159445012 + L3 LINE CR1 1047 1113 -464 1650 91 55 9 chr3 68079643 68079863 -159444715 + MER30 DNA MER1_type 1 230 0 313 269 0 74 chr3 68080062 68080170 -159444408 - L2 LINE L2 0 3272 3173 255 241 46 0 chr3 68080234 68080342 -159444236 + (TTATA)n Simple_repeat Simple_repeat 5 117 0 652 221 23 8 chr3 68080411 68080542 -159444036 - MIR SINE MIR -79 183 51 214 261 210 17 chr3 68080621 68080740 -159443838 + L3 LINE CR1 1411 1552 -25 225 0 0 0 chr3 68081790 68081815 -159442763 + (A)n Simple_repeat Simple_repeat 1 25 0 379 346 37 15 chr3 68081844 68081980 -159442598 - MER91A DNA MER1_type -23 173 35 23 0 0 0 chr3 68083546 68083569 -159441009 + AT_rich Low_complexity Low_complexity 1 23 0 336 331 73 8 chr3 68083658 68083782 -159440796 - L2 LINE L2 0 3272 3141 181 393 0 0 chr3 68084923 68084979 -159439599 + MIR SINE MIR 2 57 -205 1040 136 7 0 chr3 68085000 68085147 -159439431 + L1PB4 LINE L1 5990 6137 -19 187 244 0 0 chr3 68085313 68085354 -159439224 + MIR SINE MIR 124 164 -98 206 346 91 60 chr3 68085514 68085812 -159438766 - L2 LINE L2 -38 3234 2928 418 282 46 46 chr3 68086466 68086661 -159437917 + L1MC/D LINE L1 5458 5652 -2156 1869 146 3 10 chr3 68086720 68087008 -159437570 + AluJb SINE Alu 1 286 -26 459 0 0 0 chr3 68087008 68087059 -159437519 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 318 311 67 17 chr3 68088257 68088376 -159436202 - MIR SINE MIR -48 214 90 1435 276 103 16 chr3 68088378 68088875 -159435703 - MLT1K LTR MaLR -5 583 44 240 254 184 18 chr3 68089413 68089527 -159435051 + MIR SINE MIR 50 182 -80 25 65 0 0 chr3 68089560 68089606 -159434972 + AT_rich Low_complexity Low_complexity 1 46 0 1267 219 101 61 chr3 68089869 68089958 -159434620 - L1ME3A LINE L1 -2 6168 6084 2315 103 0 0 chr3 68089958 68090258 -159434320 + AluSg SINE Alu 1 300 -10 1267 219 101 61 chr3 68090258 68090661 -159433917 - L1ME3A LINE L1 -86 6084 5656 1860 191 23 25 chr3 68090796 68091195 -159433383 + MLT1D LTR MaLR 108 505 0 378 291 79 42 chr3 68091195 68091384 -159433194 - MIR SINE MIR -22 240 45 180 176 0 0 chr3 68091743 68091777 -159432801 + (TG)n Simple_repeat Simple_repeat 1 34 0 1027 223 14 41 chr3 68092280 68092588 -159431990 - L1ME3A LINE L1 -566 5604 5304 2118 134 3 3 chr3 68092588 68092887 -159431691 - AluSx SINE Alu -13 299 1 1027 223 14 41 chr3 68092887 68092909 -159431669 - L1ME3A LINE L1 -866 5304 5283 21 0 0 0 chr3 68092971 68092992 -159431586 + AT_rich Low_complexity Low_complexity 1 21 0 326 368 149 5 chr3 68093036 68093419 -159431159 - L2 LINE L2 -4 3309 2872 1467 168 4 22 chr3 68093419 68093645 -159430933 - MER58A DNA MER1_type 0 224 3 310 309 142 19 chr3 68093674 68093836 -159430742 + L2 LINE L2 2600 2781 -533 1132 62 0 0 chr3 68094587 68094717 -159429861 - AluSq/x SINE Alu -183 130 1 21 36 0 0 chr3 68094877 68094905 -159429673 + AT_rich Low_complexity Low_complexity 1 28 0 672 279 61 24 chr3 68094948 68095195 -159429383 + MIR SINE MIR 6 261 -1 323 276 151 13 chr3 68095294 68095446 -159429132 + MIR SINE MIR 79 251 -11 539 231 181 0 chr3 68096190 68096350 -159428228 + MIR SINE MIR 43 231 -31 686 304 42 4 chr3 68096468 68096708 -159427870 + MIR SINE MIR 1 249 -13 189 0 0 0 chr3 68097000 68097021 -159427557 + (GGAGA)n Simple_repeat Simple_repeat 1 21 0 1401 153 38 11 chr3 68097799 68098061 -159426517 + L1MB7 LINE L1 5770 6038 -146 425 262 32 8 chr3 68098059 68098185 -159426393 + L1MC/D LINE L1 5693 5821 -1987 * 2128 131 10 10 chr3 68098205 68098510 -159426068 + AluSx SINE Alu 1 305 -7 970 213 0 0 chr3 68098510 68098670 -159425908 + AluJo/FRAM SINE Alu 137 296 -16 38 0 0 0 chr3 68098670 68098708 -159425870 + AT_rich Low_complexity Low_complexity 1 38 0 2069 138 0 0 chr3 68098952 68099243 -159425335 - AluSg SINE Alu -19 291 1 256 344 48 16 chr3 68099552 68099677 -159424901 - L3 LINE CR1 -105 1472 1344 516 350 42 4 chr3 68099698 68099938 -159424640 + MIR SINE MIR 13 261 -1 243 146 0 0 chr3 68100024 68100065 -159424513 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 816 297 165 8 chr3 68100275 68100645 -159423933 + L2 LINE L2 2879 3306 -7 261 171 197 13 chr3 68100646 68100722 -159423856 - L2 LINE L2 -9 3263 3174 2768 150 12 7 chr3 68101165 68101591 -159422987 - MSTA LTR MaLR 0 428 1 515 291 44 14 chr3 68101752 68101967 -159422611 + MIR SINE MIR 24 245 -17 298 204 148 9 chr3 68102289 68102397 -159422181 + MIR SINE MIR 16 138 -70 297 75 0 0 chr3 68104034 68104074 -159420504 + (TG)n Simple_repeat Simple_repeat 2 41 0 350 311 9 0 chr3 68104111 68104217 -159420361 + MIR SINE MIR 155 261 -1 229 248 60 90 chr3 68105007 68105140 -159419438 - LTR67 LTR ERVL -3 554 426 2276 103 6 0 chr3 68105579 68105890 -159418688 - AluSq SINE Alu 0 313 1 320 318 24 0 chr3 68106462 68106547 -159418031 - L2 LINE L2 0 3272 3186 228 143 0 0 chr3 68107480 68107522 -159417056 + (TATG)n Simple_repeat Simple_repeat 4 45 0 27 0 0 0 chr3 68107827 68107854 -159416724 + AT_rich Low_complexity Low_complexity 1 27 0 186 319 0 0 chr3 68109133 68109180 -159415398 + MIR SINE MIR 49 95 -167 328 261 98 72 chr3 68109255 68109408 -159415170 + MIR3 SINE MIR 2 158 -50 231 215 37 103 chr3 68109565 68109672 -159414906 + MIR SINE MIR 117 216 -46 1606 200 45 91 chr3 68109676 68109832 -159414746 - MLT1D LTR MaLR 0 505 343 1594 204 58 45 chr3 68109832 68110214 -159414364 + MLT1B LTR MaLR 1 387 -3 1606 200 45 91 chr3 68110214 68110586 -159413992 - MLT1D LTR MaLR -162 343 1 1270 305 37 39 chr3 68111098 68111643 -159412935 - MLT1K LTR MaLR -15 573 30 2170 123 3 7 chr3 68111725 68112034 -159412544 - AluSg SINE Alu -2 308 1 604 235 70 98 chr3 68112099 68112486 -159412092 - LTR52 LTR ERVL -38 383 8 2356 144 17 6 chr3 68113038 68113398 -159411180 - THE1B LTR MaLR 0 364 1 905 259 93 16 chr3 68113417 68113799 -159410779 + L1ME3 LINE L1 5752 6162 0 2729 191 26 2 chr3 68113848 68114341 -159410237 + MLT1D LTR MaLR 1 505 0 180 176 0 0 chr3 68114944 68114978 -159409600 + (TG)n Simple_repeat Simple_repeat 1 34 0 295 241 157 0 chr3 68115292 68115375 -159409203 + MIR SINE MIR 8 103 -159 369 303 25 8 chr3 68115430 68115552 -159409026 - MIR3 SINE MIR -15 193 70 458 188 10 0 chr3 68116299 68116400 -159408178 + CT-rich Low_complexity Low_complexity 3 104 0 613 365 48 31 chr3 68117502 68118040 -159406538 - L2 LINE L2 -176 3096 2545 1461 191 143 31 chr3 68118288 68118644 -159405934 - MSTD LTR MaLR 0 396 1 2527 113 34 3 chr3 68120076 68120429 -159404149 - THE1B LTR MaLR 0 364 1 405 238 38 69 chr3 68120429 68120589 -159403989 - MIR SINE MIR -25 237 83 652 273 41 27 chr3 68120616 68120758 -159403820 - MER58A DNA MER1_type -2197 223 75 5722 143 47 48 chr3 68120758 68121828 -159402750 - MER11C LTR ERVK -2 1069 1 652 273 41 27 chr3 68121828 68121905 -159402673 - MER58A DNA MER1_type -2345 75 1 523 303 48 19 chr3 68121943 68122151 -159402427 + MIR SINE MIR 15 228 -34 560 233 27 48 chr3 68123055 68123201 -159401377 - MLT1K LTR MaLR -55 533 391 290 299 55 49 chr3 68123380 68123544 -159401034 + MER5A DNA MER1_type 20 184 -5 651 241 96 50 chr3 68124044 68124264 -159400314 + MIR SINE MIR 32 261 -1 591 278 40 11 chr3 68124478 68124654 -159399924 + MIR SINE MIR 2 182 -80 224 117 50 17 chr3 68125032 68125092 -159399486 + CT-rich Low_complexity Low_complexity 4 65 0 1551 207 82 36 chr3 68125538 68126016 -159398562 - MER113 DNA MER1_type? -16 505 6 828 219 25 54 chr3 68126330 68126572 -159398006 + MIR SINE MIR 28 262 0 285 29 0 0 chr3 68126586 68126620 -159397958 + (CCA)n Simple_repeat Simple_repeat 3 36 0 191 299 45 15 chr3 68126630 68126697 -159397881 + MIR SINE MIR 109 177 -85 772 195 63 68 chr3 68127400 68127590 -159396988 + MER5A DNA MER1_type 1 189 0 335 280 131 30 chr3 68128232 68128400 -159396178 + MIR SINE MIR 73 257 -5 1935 136 83 12 chr3 68128651 68128990 -159395588 - MLT1A1 LTR MaLR -2 363 1 379 321 28 0 chr3 68129523 68129629 -159394949 + MIR SINE MIR 20 128 -134 4228 78 20 24 chr3 68130437 68130991 -159393587 - MER41A LTR ERV1 0 554 3 907 234 128 53 chr3 68131764 68132179 -159392399 + MLT1C LTR MaLR 22 467 0 396 272 37 37 chr3 68133396 68133532 -159391046 - MER5A DNA MER1_type -4 185 50 5051 119 43 26 chr3 68134028 68134794 -159389784 + MER4E LTR ERV1 1 779 0 258 269 36 69 chr3 68135834 68136040 -159388538 + MIR SINE MIR 9 261 -1 504 198 16 40 chr3 68137307 68137433 -159387145 - MER5B DNA MER1_type -1 177 55 303 299 120 0 chr3 68139833 68139950 -159384628 + MIR3 SINE MIR 54 184 -24 514 311 101 9 chr3 68140244 68140472 -159384106 - L2 LINE L2 -228 3085 2837 586 254 94 31 chr3 68142575 68142799 -159381779 + MIR SINE MIR 23 260 -2 204 125 0 0 chr3 68143039 68143071 -159381507 + (T)n Simple_repeat Simple_repeat 1 32 0 303 218 41 136 chr3 68143110 68143330 -159381248 - L1ME3A LINE L1 -7 6146 5948 435 198 31 10 chr3 68143386 68143482 -159381096 - L1ME3A LINE L1 -205 5948 5851 * 2799 267 115 57 chr3 68143458 68144610 -159379968 - L1ME3A LINE L1 -632 5513 4430 372 43 0 0 chr3 68144610 68144656 -159379922 + (CA)n Simple_repeat Simple_repeat 2 47 0 2799 267 115 57 chr3 68144656 68145803 -159378775 - L1ME3A LINE L1 -1715 4430 3021 820 67 0 0 chr3 68145803 68145907 -159378671 - L1MA1 LINE L1 -2 6300 6197 2799 267 115 57 chr3 68145907 68146059 -159378519 - L1ME3A LINE L1 -3124 3021 2879 1625 168 0 0 chr3 68146059 68146309 -159378269 - AluJb SINE Alu -62 250 1 236 222 111 30 chr3 68146309 68146395 -159378183 - L1PBa LINE L1 -4221 2642 2546 332 319 50 65 chr3 68146678 68147118 -159377460 - L1ME3A LINE L1 -4918 1201 773 1653 218 18 37 chr3 68147118 68147498 -159377080 - MLT1A2 LTR MaLR -1 373 1 332 319 50 65 chr3 68147498 68147718 -159376860 - L1ME3A LINE L1 -5346 773 551 613 364 60 32 chr3 68148133 68148672 -159375906 - L2 LINE L2 -176 3096 2545 1770 176 123 19 chr3 68148919 68149278 -159375300 - MSTD LTR MaLR 0 396 1 363 271 12 35 chr3 68150055 68150338 -159374240 + T-rich Low_complexity Low_complexity 1 276 0 3281 158 25 44 chr3 68150496 68151127 -159373451 + L1MB3 LINE L1 5565 6183 0 555 347 70 23 chr3 68151315 68151744 -159372834 - LTR16A LTR ERVL 0 450 2 773 211 135 55 chr3 68152084 68152321 -159372257 + MLT1K LTR MaLR 310 565 -23 185 254 191 0 chr3 68152382 68152445 -159372133 + L2 LINE L2 3193 3267 -5 442 271 44 94 chr3 68153187 68153419 -159371159 + MIR SINE MIR 34 262 0 327 333 37 0 chr3 68153750 68153858 -159370720 + L2 LINE L2 3161 3272 0 235 250 231 9 chr3 68154156 68154264 -159370314 - MIR3 SINE MIR -53 155 24 297 299 34 8 chr3 68155257 68155374 -159369204 - MIR SINE MIR -32 230 111 433 268 24 0 chr3 68155392 68155515 -159369063 - MIR SINE MIR -21 241 116 582 238 148 57 chr3 68155594 68155804 -159368774 + MIR SINE MIR 15 243 -19 2112 113 7 0 chr3 68155838 68156122 -159368456 + AluSx SINE Alu 10 295 -17 1398 140 0 19 chr3 68156251 68156465 -159368113 + AluJo SINE Alu 86 295 -17 306 312 106 42 chr3 68157029 68157266 -159367312 + L2 LINE L2 2872 3123 -190 300 342 36 31 chr3 68157385 68157581 -159366997 + MER117 DNA MER1_type 1 197 0 2145 138 0 0 chr3 68157915 68158212 -159366366 - AluSx SINE Alu -15 297 1 210 317 37 55 chr3 68159360 68159605 -159364973 + MIR SINE MIR 3 241 -21 242 309 0 0 chr3 68161558 68161613 -159362965 + G-rich Low_complexity Low_complexity 3 57 0 368 204 51 51 chr3 68161846 68161944 -159362634 - MIR SINE MIR -1 261 164 402 192 58 70 chr3 68162122 68162278 -159362300 + L1ME4a LINE L1 5968 6121 0 233 324 29 19 chr3 68162418 68162523 -159362055 - MIR SINE MIR -79 183 78 242 282 24 35 chr3 68162944 68163029 -159361549 + Charlie8 DNA MER1_type 179 262 -2155 2084 86 39 15 chr3 68163076 68163469 -159361109 + LTR7 LTR ERV1 1 450 0 215 364 0 13 chr3 68163514 68163591 -159360987 - L2 LINE L2 -675 2639 2564 203 237 69 114 chr3 68163692 68163823 -159360755 + L2 LINE L2 3142 3266 -6 628 100 0 0 chr3 68164635 68164715 -159359863 + MADE1 DNA Mariner 1 80 0 2956 79 27 0 chr3 68165118 68165485 -159359093 - MER51B LTR ERV1 0 377 1 524 247 98 61 chr3 68166043 68166322 -159358256 + MER34 LTR ERV1 1 482 -225 319 308 86 0 chr3 68166392 68166509 -159358069 + MIR SINE MIR 20 146 -62 2414 58 7 0 chr3 68166627 68166920 -159357658 + AluY SINE Alu 1 295 -16 322 299 67 37 chr3 68167044 68167178 -159357400 - MIR3 SINE MIR -63 145 8 321 253 23 11 chr3 68167336 68167423 -159357155 + L1MC4 LINE L1 6616 6703 -1339 233 220 0 0 chr3 68167423 68167473 -159357105 + LTR66 LTR ERVL 398 447 -163 231 160 140 0 chr3 68167434 68167484 -159357094 - LTR66 LTR ERVL -172 438 382 * 300 367 78 37 chr3 68167736 68168030 -159356548 + L3 LINE CR1 582 887 -690 180 115 0 0 chr3 68168207 68168233 -159356345 - MIR SINE MIR -120 142 117 239 220 0 17 chr3 68168589 68168648 -159355930 - LTR66 LTR ERVL -171 439 382 319 380 92 34 chr3 68168900 68169311 -159355267 + L3 LINE CR1 582 1016 -561 307 273 203 56 chr3 68169325 68169468 -159355110 - MIR3 SINE MIR -14 194 31 1769 120 0 33 chr3 68169817 68170093 -159354485 - L1MB5 LINE L1 -22 6152 5886 223 352 28 9 chr3 68170181 68170289 -159354289 + L3 LINE CR1 1454 1563 -14 1381 223 156 12 chr3 68171007 68171411 -159353167 + MLT1C LTR MaLR 6 467 0 1080 195 14 23 chr3 68173910 68174131 -159350447 + MER20 DNA MER1_type 1 219 0 228 317 164 19 chr3 68175599 68175703 -159348875 + L2 LINE L2 3134 3252 -20 303 28 0 0 chr3 68175930 68175966 -159348612 + (CA)n Simple_repeat Simple_repeat 2 37 0 4693 90 0 13 chr3 68177165 68177787 -159346791 + L1PB1 LINE L1 5538 6151 0 403 270 145 0 chr3 68178031 68178183 -159346395 + MIR SINE MIR 72 245 -17 778 133 30 15 chr3 68179347 68179482 -159345096 + AluJb SINE Alu 176 312 0 291 297 0 0 chr3 68179800 68179874 -159344704 + GA-rich Low_complexity Low_complexity 3 76 0 22 35 0 0 chr3 68181359 68181388 -159343190 + AT_rich Low_complexity Low_complexity 1 29 0 1550 179 36 102 chr3 68181641 68182032 -159342546 + MLT1A1 LTR MaLR 1 365 0 279 295 82 8 chr3 68182107 68182229 -159342349 + MIR SINE MIR 19 149 -59 1099 235 14 0 chr3 68182401 68182614 -159341964 + MER58A DNA MER1_type 9 224 0 393 305 161 50 chr3 68182732 68183168 -159341410 - L2 LINE L2 -787 2527 2044 26 0 0 0 chr3 68183639 68183665 -159340913 + AT_rich Low_complexity Low_complexity 1 26 0 6565 140 9 4 chr3 68183696 68185319 -159339259 - L1PB1 LINE L1 0 6151 4521 4088 175 10 0 chr3 68185306 68186077 -159338501 + L1 LINE L1 3704 4482 -1664 * 225 358 0 11 chr3 68186278 68186373 -159338205 + MIR SINE MIR 168 261 -1 189 154 0 0 chr3 68187793 68187832 -159336746 + (TCCA)n Simple_repeat Simple_repeat 3 41 0 1177 152 37 0 chr3 68188018 68188209 -159336369 - AluJb SINE Alu -18 294 97 288 218 24 118 chr3 68188211 68188381 -159336197 + L2 LINE L2 3053 3206 -107 433 294 13 20 chr3 68188580 68188733 -159335845 - MER20B DNA MER1_type -631 152 1 228 269 39 51 chr3 68189275 68189353 -159335225 - L2 LINE L2 -10 3262 3186 451 293 131 15 chr3 68189429 68189627 -159334951 - MIR SINE MIR -37 225 5 316 312 16 16 chr3 68190291 68190416 -159334162 + MIR SINE MIR 47 171 -91 1783 165 3 13 chr3 68190705 68191020 -159333558 + AluSx SINE Alu 1 312 0 453 222 32 24 chr3 68192007 68192133 -159332445 + AluJb SINE Alu 173 299 -13 230 315 0 0 chr3 68193869 68193923 -159330655 - L2 LINE L2 -9 3263 3210 212 354 112 46 chr3 68193934 68194219 -159330359 + L3 LINE CR1 1062 1365 -212 22 0 0 0 chr3 68195859 68195881 -159328697 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 68198772 68198793 -159325785 + AT_rich Low_complexity Low_complexity 1 21 0 436 297 54 59 chr3 68200534 68200756 -159323822 - MIR SINE MIR -34 228 8 926 172 45 0 chr3 68201142 68201340 -159323238 + MER65A LTR ERV1 239 445 0 1339 289 29 51 chr3 68201646 68202524 -159322054 - Tigger6a DNA MER2_type -8 1075 218 258 293 0 13 chr3 68202705 68202780 -159321798 + L2 LINE L2 3196 3269 -3 195 313 159 43 chr3 68202985 68203218 -159321360 + L2 LINE L2 2481 2740 -574 454 318 127 48 chr3 68203265 68203683 -159320895 + L2 LINE L2 2859 3309 -4 22 0 0 0 chr3 68204286 68204308 -159320270 + AT_rich Low_complexity Low_complexity 1 22 0 185 297 16 0 chr3 68204340 68204404 -159320174 - MER5A DNA MER1_type -24 165 101 773 178 0 0 chr3 68204919 68205048 -159319530 + AluSx SINE Alu 33 161 -151 785 261 16 77 chr3 68205444 68205884 -159318694 + Charlie4a DNA MER1_type 24 436 -72 990 244 37 0 chr3 68205885 68206102 -159318476 + AluJo SINE Alu 51 275 -37 27 0 0 0 chr3 68206112 68206139 -159318439 + AT_rich Low_complexity Low_complexity 1 27 0 1087 253 37 13 chr3 68206528 68206938 -159317640 - L1 LINE L1 -1203 4943 4518 647 291 9 9 chr3 68206994 68207214 -159317364 - MER58A DNA MER1_type -2 222 3 1209 228 13 17 chr3 68208449 68208747 -159315831 - AluJo SINE Alu -15 297 1 1510 153 71 4 chr3 68209734 68209989 -159314589 - AluSq SINE Alu -41 272 1 384 317 34 14 chr3 68210315 68210523 -159314055 - MLT1I LTR MaLR -2 407 196 250 325 33 17 chr3 68212450 68212570 -159312008 - MIR SINE MIR -30 232 111 987 179 40 4 chr3 68213865 68214117 -159310461 - MER33 DNA MER1_type -8 316 56 24 0 0 0 chr3 68214574 68214598 -159309980 + AT_rich Low_complexity Low_complexity 1 24 0 954 228 58 86 chr3 68215055 68215507 -159309071 + L1MC4 LINE L1 6579 7017 -1025 387 0 0 0 chr3 68215550 68215593 -159308985 + (CA)n Simple_repeat Simple_repeat 2 44 0 361 251 89 10 chr3 68215626 68215840 -159308738 + L1MA9 LINE L1 6040 6265 -26 22 0 0 0 chr3 68215840 68215862 -159308716 + AT_rich Low_complexity Low_complexity 1 22 0 244 266 88 37 chr3 68215868 68216165 -159308413 + L1MC4 LINE L1 7089 7400 -642 323 345 26 42 chr3 68217966 68218157 -159306421 - MER5A DNA MER1_type -1 188 1 1174 289 24 27 chr3 68219765 68220139 -159304439 - LTR16C LTR ERVL -2 489 117 186 203 0 62 chr3 68221074 68221138 -159303440 - L2 LINE L2 0 3313 3254 899 178 7 122 chr3 68222442 68222590 -159301988 - L1MB4 LINE L1 -15 6165 6064 2078 79 48 20 chr3 68222590 68222882 -159301696 + AluSc SINE Alu 7 306 -3 899 178 7 122 chr3 68222882 68223019 -159301559 - L1MB4 LINE L1 -116 6064 5913 1040 252 91 54 chr3 68223019 68223424 -159301154 - LOR1b LTR ERV1 0 461 42 25 0 0 28 chr3 68223747 68223765 -159300813 + AT_rich Low_complexity Low_complexity 1 18 -17 1405 193 44 3 chr3 68223765 68224061 -159300517 + AluY SINE Alu 4 311 0 25 0 0 28 chr3 68224061 68224078 -159300500 + AT_rich Low_complexity Low_complexity 18 35 0 24 0 0 0 chr3 68224481 68224505 -159300073 + AT_rich Low_complexity Low_complexity 1 24 0 243 178 37 84 chr3 68224622 68224729 -159299849 - MLT1J LTR MaLR -11 500 399 1357 157 168 80 chr3 68225492 68225843 -159298735 - MER4A LTR ERV1 -26 638 257 491 129 54 11 chr3 68225840 68225933 -159298645 - MER4A LTR ERV1 -567 97 1 * 3585 129 55 9 chr3 68225940 68226626 -159297952 - MER4A-int LTR ERV1 -2 6596 5189 271 333 48 16 chr3 68227445 68227571 -159297007 + MIR SINE MIR 20 149 -113 1228 214 51 71 chr3 68228288 68228736 -159295842 + L1MC4 LINE L1 6579 7017 -1025 387 0 0 0 chr3 68228779 68228822 -159295756 + (CA)n Simple_repeat Simple_repeat 2 44 0 420 223 110 15 chr3 68228840 68229090 -159295488 + L1MA9 LINE L1 6021 6288 -3 2634 207 78 61 chr3 68229097 68230035 -159294543 + L1MC4 LINE L1 7089 8042 0 204 385 72 0 chr3 68230088 68230254 -159294324 + MIR SINE MIR 85 262 0 2240 61 47 0 chr3 68231111 68231390 -159293188 - AluY SINE Alu -18 293 2 297 0 0 0 chr3 68231770 68231803 -159292775 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 2064 121 4 0 chr3 68232401 68232710 -159291868 + AluSx SINE Alu 1 310 0 240 250 105 0 chr3 68232913 68232989 -159291589 + MER91C DNA MER1_type 4 87 -53 263 241 35 15 chr3 68233391 68233559 -159291019 + L1MB8 LINE L1 5754 5925 -253 310 346 31 31 chr3 68233882 68234012 -159290566 - L2 LINE L2 -3 3310 3181 312 325 89 8 chr3 68234359 68234482 -159290096 + L2 LINE L2 2948 3080 -192 180 248 208 64 chr3 68234584 68234709 -159289869 - MER5A DNA MER1_type -26 163 21 220 287 23 58 chr3 68234718 68234805 -159289773 + L2 LINE L2 3168 3251 -21 193 214 24 0 chr3 68234828 68234870 -159289708 - L2 LINE L2 -5 3267 3225 236 303 22 67 chr3 68235489 68235578 -159289000 + L2 LINE L2 3168 3252 -20 1104 186 69 29 chr3 68236341 68236647 -159287931 + MER33 DNA MER1_type 5 322 -2 2368 117 0 6 chr3 68236944 68237294 -159287284 + THE1B LTR MaLR 17 364 0 214 115 39 0 chr3 68237647 68237699 -159286879 + (CAA)n Simple_repeat Simple_repeat 1 54 0 833 271 41 9 chr3 68237722 68237943 -159286635 - MIR SINE MIR -19 243 16 226 309 60 77 chr3 68238744 68239029 -159285549 + L2 LINE L2 1745 2024 -1290 225 0 0 0 chr3 68239715 68239740 -159284838 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 225 0 0 0 chr3 68240647 68240672 -159283906 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 432 234 14 28 chr3 68241675 68241816 -159282762 + MER103 DNA DNA 7 145 -21 24 0 0 0 chr3 68242869 68242893 -159281685 + AT_rich Low_complexity Low_complexity 1 24 0 2605 211 53 163 chr3 68243348 68243838 -159280740 + L1MC4 LINE L1 6579 7121 -921 396 0 0 0 chr3 68243838 68243882 -159280696 + (CA)n Simple_repeat Simple_repeat 1 44 0 2605 211 53 163 chr3 68243882 68245035 -159279543 + L1MC4 LINE L1 7121 8042 0 236 380 72 0 chr3 68245088 68245254 -159279324 + MIR SINE MIR 85 262 0 221 274 71 24 chr3 68246624 68246708 -159277870 - L2 LINE L2 0 3272 3185 315 293 42 58 chr3 68247208 68247399 -159277179 + MER5A DNA MER1_type 1 188 -1 4049 208 29 13 chr3 68248066 68249681 -159274897 - L1PA16 LINE L1 -9 6157 4518 1025 232 5 0 chr3 68249743 68249954 -159274624 - MER58A DNA MER1_type -10 214 3 247 210 32 16 chr3 68250022 68250084 -159274494 + LTR50 LTR ERVL 8 70 -725 203 343 29 0 chr3 68250495 68250565 -159274013 - L2 LINE L2 0 3272 3201 182 284 30 104 chr3 68251711 68251845 -159272733 + MIR3 SINE MIR 76 199 -9 460 284 52 62 chr3 68251915 68252126 -159272452 - MIR SINE MIR -45 217 9 420 302 54 59 chr3 68252340 68252562 -159272016 + MIR SINE MIR 8 228 -34 510 273 51 43 chr3 68253457 68253713 -159270865 - L1MC4a LINE L1 -1976 5832 5575 346 350 143 10 chr3 68254788 68254991 -159269587 + MIR SINE MIR 20 249 -13 182 103 0 26 chr3 68257359 68257398 -159267180 + (CAAAA)n Simple_repeat Simple_repeat 1 38 0 3014 179 66 12 chr3 68257674 68258355 -159266223 - MER50 LTR ERV1 -16 718 1 1163 150 7 113 chr3 68258791 68258954 -159265624 - L1MB4 LINE L1 0 6180 6062 2141 82 48 17 chr3 68258954 68259246 -159265332 + AluSc SINE Alu 7 307 -2 1163 150 7 113 chr3 68259246 68259382 -159265196 - L1MB4 LINE L1 -118 6062 5913 932 141 150 52 chr3 68259382 68259595 -159264983 - LOR1a LTR ERV1 0 497 264 495 126 95 0 chr3 68259696 68259791 -159264787 - L1MB4 LINE L1 -317 5867 5764 362 288 75 71 chr3 68259860 68260072 -159264506 + MIR SINE MIR 31 243 -19 409 318 24 33 chr3 68261403 68261614 -159262964 + MIR SINE MIR 48 256 -6 189 0 0 0 chr3 68262810 68262831 -159261747 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 590 356 64 42 chr3 68263779 68264136 -159260442 - L2 LINE L2 -1 3271 2907 377 160 0 43 chr3 68264292 68264386 -159260192 + MER53 DNA DNA 42 131 -58 244 96 41 27 chr3 68264393 68264466 -159260112 + (TA)n Simple_repeat Simple_repeat 2 75 0 212 250 29 15 chr3 68264495 68264563 -159260015 - L2 LINE L2 -554 2760 2692 336 200 50 0 chr3 68264706 68264786 -159259792 - MER57A LTR ERV1 0 403 320 4706 163 3 34 chr3 68264790 68265651 -159258927 - MER66-int LTR ERV1 -556 6120 5286 499 231 15 30 chr3 68265651 68265785 -159258793 - MER66B LTR ERV1 -354 132 1 362 197 101 144 chr3 68265786 68265994 -159258584 - MER57A LTR ERV1 -200 203 5 272 320 54 116 chr3 68266002 68266296 -159258282 + L2 LINE L2 2997 3272 0 934 188 74 80 chr3 68267425 68267802 -159256776 - Charlie5 DNA MER1_type 0 2619 2245 521 222 26 0 chr3 68267809 68267926 -159256652 - Charlie5 DNA MER1_type -2488 124 5 1615 189 58 21 chr3 68268626 68268736 -159255842 + MLT1B LTR MaLR 1 105 -285 2075 143 0 0 chr3 68268736 68269044 -159255534 + AluY SINE Alu 1 308 -3 1615 189 58 21 chr3 68269044 68269309 -159255269 + MLT1B LTR MaLR 105 390 0 321 316 146 12 chr3 68269341 68269512 -159255066 + MIR SINE MIR 4 197 -65 217 323 268 4 chr3 68271262 68271516 -159253062 + L2 LINE L2 2244 2564 -750 236 245 0 0 chr3 68271537 68271586 -159252992 + GA-rich Low_complexity Low_complexity 1 49 0 2047 96 114 24 chr3 68271645 68271979 -159252599 + THE1B LTR MaLR 1 364 0 778 131 8 0 chr3 68272013 68272143 -159252435 - L1MB2 LINE L1 -39 6132 6002 222 37 0 0 chr3 68273521 68273548 -159251030 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 294 341 154 24 chr3 68273621 68273829 -159250749 + MIR SINE MIR 1 235 -27 264 295 63 0 chr3 68274177 68274272 -159250306 + L2 LINE L2 3193 3293 -20 1558 169 12 99 chr3 68274448 68274873 -159249705 + MLT1B LTR MaLR 1 388 -2 2401 101 0 0 chr3 68276768 68277076 -159247502 + AluSc SINE Alu 1 308 -1 239 296 37 0 chr3 68277188 68277269 -159247309 + L2 LINE L2 3229 3312 -1 303 345 9 17 chr3 68277322 68277438 -159247140 - MIR SINE MIR -119 143 29 423 295 47 61 chr3 68277912 68278343 -159246235 + MLT1F LTR MaLR 120 554 -1 2108 126 3 3 chr3 68279198 68279491 -159245087 + AluSx SINE Alu 1 293 -19 2281 88 24 0 chr3 68279530 68279825 -159244753 + AluSx SINE Alu 1 302 -10 207 0 0 0 chr3 68280423 68280446 -159244132 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 805 289 97 13 chr3 68280993 68281366 -159243212 + MLT1I LTR MaLR 4 407 -2 1872 94 71 4 chr3 68281692 68281947 -159242631 + AluSq SINE Alu 1 272 -41 290 279 125 15 chr3 68282952 68283088 -159241490 - L3 LINE CR1 -1 1576 1426 * 316 301 0 0 chr3 68283066 68283149 -159241429 + MIR SINE MIR 143 225 -37 847 232 19 0 chr3 68283250 68283457 -159241121 - Tigger6 DNA MER2_type -1373 224 14 526 184 157 14 chr3 68283719 68283866 -159240712 - MER3 DNA MER1_type -41 168 1 417 20 0 0 chr3 68284550 68284600 -159239978 + (TG)n Simple_repeat Simple_repeat 1 50 0 2004 136 0 0 chr3 68284611 68284883 -159239695 - AluSx SINE Alu -40 272 1 351 278 170 24 chr3 68286557 68286769 -159237809 + L2 LINE L2 2380 2622 -692 329 276 52 60 chr3 68287068 68287202 -159237376 + L2 LINE L2 3136 3268 -4 210 304 29 29 chr3 68287868 68287937 -159236641 - L2 LINE L2 0 3272 3204 377 333 33 16 chr3 68288900 68289083 -159235495 - MER117 DNA MER1_type -1 196 11 550 267 71 24 chr3 68289143 68289398 -159235180 - MLT1I LTR MaLR -142 267 1 401 284 14 7 chr3 68289653 68289794 -159234784 - MER103 DNA DNA -16 150 9 330 225 50 67 chr3 68289957 68290077 -159234501 + MIR SINE MIR 60 177 -85 316 313 89 0 chr3 68291639 68291818 -159232760 + MER117 DNA MER1_type 1 195 -2 434 286 52 19 chr3 68291823 68291977 -159232601 + MIR3 SINE MIR 16 174 -34 2217 123 3 0 chr3 68291982 68292284 -159232294 + AluSp SINE Alu 1 303 -10 353 254 59 8 chr3 68292377 68292495 -159232083 + MLT1H LTR MaLR 41 164 -385 2143 101 0 7 chr3 68292697 68293004 -159231574 - AluSq SINE Alu 0 305 1 286 138 0 0 chr3 68293010 68293071 -159231507 + MLT1H1 LTR MaLR 495 567 0 293 253 93 43 chr3 68293136 68293294 -159231284 - MLT1G1 LTR MaLR -259 336 171 2179 177 33 12 chr3 68293294 68293717 -159230861 + MSTB1 LTR MaLR 1 432 0 302 250 9 19 chr3 68293722 68293830 -159230748 - MLT1G1 LTR MaLR -473 122 16 326 314 47 78 chr3 68294613 68294868 -159229710 + MIR SINE MIR 1 247 -15 315 281 23 138 chr3 68294975 68295192 -159229386 + L2 LINE L2 3039 3230 -42 189 405 0 14 chr3 68295250 68295324 -159229254 + L2 LINE L2 2986 3058 -214 210 278 19 0 chr3 68296653 68296707 -159227871 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 22 0 0 0 chr3 68297101 68297123 -159227455 + AT_rich Low_complexity Low_complexity 1 22 0 230 306 0 14 chr3 68298174 68298246 -159226332 + L3 LINE CR1 1416 1486 -91 494 218 34 92 chr3 68299028 68299131 -159225447 + MER112 DNA MER1_type 66 153 -107 2043 170 0 0 chr3 68299131 68299443 -159225135 + AluJb SINE Alu 1 312 0 494 218 34 92 chr3 68299443 68299545 -159225033 + MER112 DNA MER1_type 153 259 -1 284 305 17 0 chr3 68301588 68301706 -159222872 + L1MB7 LINE L1 5742 5861 -260 231 207 24 12 chr3 68301759 68301841 -159222737 + MER20B DNA MER1_type 662 744 -39 1042 153 39 0 chr3 68301855 68302058 -159222520 + L1MB7 LINE L1 5951 6161 -23 591 15 0 0 chr3 68302466 68302534 -159222044 + (CA)n Simple_repeat Simple_repeat 1 68 0 332 335 6 61 chr3 68302609 68302773 -159221805 + MER5A DNA MER1_type 4 158 -31 1305 232 102 18 chr3 68303677 68304163 -159220415 + MER39 LTR ERV1 10 702 -5 246 361 57 16 chr3 68304914 68305036 -159219542 + MIR SINE MIR 8 134 -128 346 271 76 31 chr3 68305155 68305292 -159219286 + MIR SINE MIR 26 171 -37 306 308 45 15 chr3 68305588 68305721 -159218857 - MER5A DNA MER1_type -18 171 35 292 292 31 10 chr3 68305637 68305733 -159218845 + MER5A DNA MER1_type 81 178 -11 * 951 233 19 42 chr3 68306591 68306853 -159217725 + MIR SINE MIR 5 260 -2 355 331 121 12 chr3 68306869 68307035 -159217543 - MIR SINE MIR -74 188 5 22 35 0 0 chr3 68307823 68307852 -159216726 + AT_rich Low_complexity Low_complexity 1 29 0 1816 162 0 0 chr3 68307933 68308205 -159216373 - AluSx SINE Alu -8 304 33 187 304 87 22 chr3 68308690 68308782 -159215796 - MER5A DNA MER1_type -56 133 36 22 0 0 0 chr3 68308814 68308836 -159215742 + AT_rich Low_complexity Low_complexity 1 22 0 239 48 0 48 chr3 68309375 68309417 -159215161 + (CAAA)n Simple_repeat Simple_repeat 3 42 0 238 350 125 12 chr3 68309996 68310156 -159214422 - L3 LINE CR1 -11 1566 1389 257 333 50 10 chr3 68310237 68310336 -159214242 - L2 LINE L2 -3 3310 3208 439 275 157 71 chr3 68310418 68310869 -159213709 - L2 LINE L2 -9 3304 2815 1089 204 9 43 chr3 68311186 68311416 -159213162 - MER58A DNA MER1_type 0 224 3 362 311 34 14 chr3 68311626 68311774 -159212804 + MLT1L LTR MaLR 369 519 -96 1894 115 0 11 chr3 68311792 68312053 -159212525 + AluSx SINE Alu 1 258 -54 298 361 101 34 chr3 68314294 68314590 -159209988 - L3 LINE CR1 -200 1377 1062 220 233 0 0 chr3 68314612 68314655 -159209923 + L2 LINE L2 3262 3304 -9 284 296 37 19 chr3 68315477 68315585 -159208993 + MIR SINE MIR 123 232 -30 840 259 17 17 chr3 68317542 68317774 -159206804 + MIR SINE MIR 31 262 0 330 297 9 9 chr3 68317848 68317959 -159206619 - MIR SINE MIR -62 146 36 573 177 152 30 chr3 68319699 68319863 -159204715 - MLT1K LTR MaLR -10 578 395 234 339 31 62 chr3 68320501 68320631 -159203947 - L2 LINE L2 -2 3270 3145 22 0 0 0 chr3 68321578 68321600 -159202978 + AT_rich Low_complexity Low_complexity 1 22 0 190 162 0 27 chr3 68322452 68322489 -159202089 + MIR SINE MIR 112 147 -61 390 384 99 24 chr3 68322839 68323172 -159201406 + L2 LINE L2 2915 3272 0 318 106 0 0 chr3 68323175 68323222 -159201356 + (TGAA)n Simple_repeat Simple_repeat 1 47 0 24 0 0 0 chr3 68324478 68324502 -159200076 + AT_rich Low_complexity Low_complexity 1 24 0 293 161 47 0 chr3 68324520 68324669 -159199909 + (TA)n Simple_repeat Simple_repeat 2 157 0 53 0 0 0 chr3 68324669 68324722 -159199856 + AT_rich Low_complexity Low_complexity 1 53 0 867 149 3 29 chr3 68324735 68325111 -159199467 + (TA)n Simple_repeat Simple_repeat 1 366 0 35 54 0 0 chr3 68325115 68325171 -159199407 + AT_rich Low_complexity Low_complexity 1 56 0 333 68 0 0 chr3 68325208 68325252 -159199326 + (TG)n Simple_repeat Simple_repeat 1 44 0 387 0 0 0 chr3 68325264 68325307 -159199271 + (TA)n Simple_repeat Simple_repeat 2 44 0 24 0 0 0 chr3 68325752 68325776 -159198802 + AT_rich Low_complexity Low_complexity 1 24 0 602 255 22 114 chr3 68325965 68326236 -159198342 + MIR SINE MIR 15 260 -2 317 290 55 41 chr3 68326958 68327103 -159197475 + MIR3 SINE MIR 27 173 -35 195 42 0 0 chr3 68327809 68327833 -159196745 + (TTTG)n Simple_repeat Simple_repeat 4 27 0 464 243 171 7 chr3 68328095 68328235 -159196343 - MIR SINE MIR -70 192 30 27 29 0 0 chr3 68328698 68328732 -159195846 + AT_rich Low_complexity Low_complexity 1 34 0 553 296 62 33 chr3 68328745 68328988 -159195590 - MIR SINE MIR 0 262 13 504 223 27 87 chr3 68329096 68329280 -159195298 - L2 LINE L2 -50 3263 3091 431 323 103 70 chr3 68330477 68331091 -159193487 - L2 LINE L2 -5 3267 2621 355 306 140 6 chr3 68332387 68332544 -159192034 - MIR SINE MIR -62 200 23 346 294 7 7 chr3 68335296 68335432 -159189146 - MER103 DNA DNA -21 145 10 294 115 0 0 chr3 68335756 68335808 -159188770 + (TTTTTG)n Simple_repeat Simple_repeat 3 54 0 192 289 0 0 chr3 68336242 68336294 -159188284 - L3 LINE CR1 -1096 481 430 272 252 17 59 chr3 68336332 68336451 -159188127 + CT-rich Low_complexity Low_complexity 3 116 0 5995 155 64 5 chr3 68336663 68337824 -159186754 + Tigger3b DNA MER2_type 2 1230 -1 286 330 23 11 chr3 68337880 68337968 -159186610 + MER91A DNA MER1_type 1 89 -107 246 330 58 44 chr3 68340458 68340664 -159183914 + MIR SINE MIR 3 211 -51 237 159 0 0 chr3 68340731 68340775 -159183803 + CT-rich Low_complexity Low_complexity 1 44 0 2145 100 0 39 chr3 68340926 68341259 -159183319 - AluY SINE Alu 0 311 1 216 171 29 0 chr3 68342241 68342276 -159182302 - L2 LINE L2 -33 3239 3204 2875 109 5 2 chr3 68342356 68342786 -159181792 + L1P3 LINE L1 1 431 -6030 720 306 137 55 chr3 68343612 68344613 -159179965 + L2 LINE L2 2186 3262 -10 192 158 0 0 chr3 68344641 68344679 -159179899 + (TGAA)n Simple_repeat Simple_repeat 4 41 0 217 289 174 0 chr3 68344820 68344941 -159179637 + MIR SINE MIR 102 243 -19 196 260 20 0 chr3 68345458 68345508 -159179070 - MIR3 SINE MIR -7 201 151 293 279 13 0 chr3 68345602 68345681 -159178897 - MER117 DNA MER1_type -117 80 1 1416 225 2 65 chr3 68346734 68347148 -159177430 - MLT1B LTR MaLR 0 390 3 481 293 79 26 chr3 68347395 68347553 -159177025 - MIR SINE MIR -10 252 104 2215 106 7 0 chr3 68347553 68347845 -159176733 - AluSc SINE Alu -15 294 1 631 213 47 0 chr3 68347848 68347975 -159176603 - AluJo/FLAM SINE Alu -169 133 1 481 293 79 26 chr3 68347975 68348041 -159176537 - MIR SINE MIR -159 103 12 1552 340 96 21 chr3 68348047 68349076 -159175502 - L2 LINE L2 -337 2977 1872 375 280 132 22 chr3 68349057 68349239 -159175339 - MIR SINE MIR -34 228 27 * 201 316 0 40 chr3 68349389 68349465 -159175113 + MIR3 SINE MIR 115 187 -21 230 172 31 47 chr3 68349559 68349623 -159174955 - L2 LINE L2 0 3313 3251 195 254 18 0 chr3 68349613 68349668 -159174910 + L2 LINE L2 2927 2982 -290 * 359 226 44 15 chr3 68350926 68351063 -159173515 + (CAGAGA)n Simple_repeat Simple_repeat 3 143 0 422 309 33 20 chr3 68353076 68353228 -159171350 + MIR SINE MIR 89 242 -20 233 219 125 0 chr3 68353254 68353318 -159171260 - MER116 DNA Mariner -8 72 1 189 0 0 0 chr3 68353653 68353674 -159170904 + (GAAAA)n Simple_repeat Simple_repeat 5 25 0 266 321 38 15 chr3 68353809 68353940 -159170638 - L2 LINE L2 -381 2933 2800 186 268 24 0 chr3 68354133 68354174 -159170404 - MIR SINE MIR -58 150 109 246 213 0 0 chr3 68355044 68355091 -159169487 + L1MD2 LINE L1 5243 5289 -857 1463 143 23 39 chr3 68355102 68355361 -159169217 + L1PA16 LINE L1 5912 6166 0 2576 200 51 47 chr3 68355396 68355692 -159168886 + L1MD2 LINE L1 5283 5576 -783 2070 125 0 47 chr3 68355692 68356013 -159168565 - AluSc SINE Alu -3 306 1 2576 200 51 47 chr3 68356013 68356380 -159168198 + L1MD2 LINE L1 5576 5949 -410 1463 212 13 13 chr3 68356397 68356704 -159167874 + L1PA15 LINE L1 1286 1592 -5195 10822 198 10 0 chr3 68356704 68359719 -159164859 + L1PA15 LINE L1 3780 6816 0 872 232 149 72 chr3 68359769 68360144 -159164434 + L1MD2 LINE L1 5937 6340 -19 406 326 39 43 chr3 68360176 68360434 -159164144 - MIR SINE MIR 0 262 6 185 267 0 17 chr3 68360982 68361042 -159163536 + L2 LINE L2 2055 2113 -1201 1853 150 13 13 chr3 68361287 68361587 -159162991 + AluJo SINE Alu 1 300 -12 333 291 0 0 chr3 68363161 68363240 -159161338 - L2 LINE L2 0 3313 3235 258 191 0 0 chr3 68363327 68363369 -159161209 - L2 LINE L2 -262 3051 3010 698 292 20 24 chr3 68363395 68363645 -159160933 - MIR SINE MIR -11 251 3 21 57 0 0 chr3 68363882 68363917 -159160661 + AT_rich Low_complexity Low_complexity 1 35 0 731 262 119 0 chr3 68364018 68364220 -159160358 - MIR SINE MIR -11 251 26 2385 209 25 46 chr3 68365532 68366168 -159158410 - L1MA9 LINE L1 -30 6282 5660 620 180 18 18 chr3 68368449 68368616 -159155962 + (TCCA)n Simple_repeat Simple_repeat 1 167 0 2833 93 11 16 chr3 68369296 68369673 -159154905 + THE1C LTR MaLR 1 375 0 357 187 16 119 chr3 68369959 68370129 -159154449 + MIR SINE MIR 101 249 -13 488 230 14 65 chr3 68370460 68370599 -159153979 + MER94 DNA DNA 1 132 -2 372 318 67 11 chr3 68370664 68370843 -159153735 + MIR SINE MIR 47 235 -27 23 0 0 0 chr3 68371949 68371972 -159152606 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr3 68372538 68372584 -159151994 + AT_rich Low_complexity Low_complexity 1 46 0 382 324 116 19 chr3 68373090 68373306 -159151272 - MIR SINE MIR -13 249 13 210 257 19 105 chr3 68373366 68373471 -159151107 + MIR SINE MIR 21 116 -92 1480 265 24 27 chr3 68373990 68374364 -159150214 + LTR16C LTR ERVL 117 489 -2 1882 97 0 30 chr3 68374613 68374880 -159149698 + AluSx SINE Alu 54 312 0 1535 176 71 28 chr3 68375019 68375215 -159149363 - L1ME LINE L1 -439 5682 5496 2518 82 0 0 chr3 68375215 68375521 -159149057 - AluSg SINE Alu -4 306 1 1535 176 71 28 chr3 68375521 68375843 -159148735 - L1ME LINE L1 -625 5496 5142 561 160 50 110 chr3 68375843 68376043 -159148535 - MLT1E2 LTR MaLR -438 188 1 212 313 48 0 chr3 68376356 68376439 -159148139 + L2 LINE L2 1770 1856 -1458 2310 67 0 11 chr3 68376441 68376750 -159147828 - AluSg SINE Alu 0 306 1 3877 173 66 0 chr3 68376766 68377519 -159147059 - L1MB7 LINE L1 0 6184 5382 567 287 102 33 chr3 68377556 68377927 -159146651 + L2 LINE L2 1949 3313 0 496 214 19 0 chr3 68377984 68378087 -159146491 + MER103 DNA DNA 4 108 -58 314 341 44 48 chr3 68378164 68378413 -159146165 + L3 LINE CR1 231 478 -1099 1559 179 14 21 chr3 68378832 68379111 -159145467 + AluJo SINE Alu 3 279 -33 313 252 17 0 chr3 68379122 68379241 -159145337 + GA-rich Low_complexity Low_complexity 2 122 0 396 118 132 13 chr3 68379337 68379413 -159145165 + MER5A DNA MER1_type 1 85 -104 21 36 0 0 chr3 68379604 68379632 -159144946 + AT_rich Low_complexity Low_complexity 1 28 0 548 246 110 11 chr3 68379654 68379845 -159144733 - MIR SINE MIR -16 246 37 360 283 0 10 chr3 68379891 68379990 -159144588 + GA-rich Low_complexity Low_complexity 2 99 0 215 363 141 0 chr3 68380853 68380988 -159143590 + MIR SINE MIR 23 176 -86 1956 68 140 0 chr3 68380994 68381258 -159143320 - AluY SINE Alu 0 301 1 416 252 37 7 chr3 68382661 68382796 -159141782 + MER117 DNA MER1_type 59 197 0 212 311 22 33 chr3 68383224 68383314 -159141264 - MER5A DNA MER1_type -66 123 35 880 244 118 59 chr3 68384616 68385005 -159139573 + L3 LINE CR1 1067 1478 -99 254 284 0 14 chr3 68385490 68385564 -159139014 + Charlie8 DNA MER1_type 2345 2417 0 312 87 0 0 chr3 68385714 68385760 -159138818 - L1PA8 LINE L1 -2 6170 6125 2070 162 46 34 chr3 68387709 68388251 -159136327 - MLT2A1 LTR ERVL 0 554 1 1842 139 27 20 chr3 68388284 68388578 -159136000 - AluJo SINE Alu -16 296 1 1130 186 115 4 chr3 68389930 68390209 -159134369 + MER33 DNA MER1_type 7 316 -8 22 35 0 0 chr3 68390574 68390603 -159133975 + AT_rich Low_complexity Low_complexity 1 29 0 202 28 28 28 chr3 68391013 68391049 -159133529 + (CA)n Simple_repeat Simple_repeat 2 37 0 479 283 49 2 chr3 68392124 68392271 -159132307 - MIR SINE MIR -76 132 9 4180 126 55 6 chr3 68393069 68393760 -159130818 + MER4A-int LTR ERV1 5872 6596 -2 558 118 54 11 chr3 68393767 68393860 -159130718 + MER4A LTR ERV1 1 97 -567 * 1622 143 168 80 chr3 68393857 68394208 -159130370 + MER4A LTR ERV1 257 638 -26 1781 122 0 0 chr3 68394654 68394900 -159129678 + AluSx SINE Alu 49 294 -18 1987 141 3 13 chr3 68394904 68395217 -159129361 + AluSg SINE Alu 1 310 0 1863 208 89 40 chr3 68396066 68396547 -159128031 + MLT1D LTR MaLR 1 505 0 311 310 103 7 chr3 68397078 68397223 -159127355 + MIR3 SINE MIR 47 205 -3 21 0 0 0 chr3 68398569 68398590 -159125988 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 68398673 68398694 -159125884 + AT_rich Low_complexity Low_complexity 1 21 0 2861 200 43 35 chr3 68399082 68399711 -159124867 + LTR27 LTR ERV1 3 636 0 2010 160 22 6 chr3 68400776 68401132 -159123446 - L1MB7 LINE L1 -9 6175 5814 5365 171 29 22 chr3 68401132 68402276 -159122302 - L1MA9 LINE L1 -3 6309 5157 2461 185 27 47 chr3 68402269 68402826 -159121752 - L1MB7 LINE L1 -355 5823 5278 * 321 304 64 41 chr3 68402830 68403001 -159121577 - MIR SINE MIR -56 206 32 2003 129 3 3 chr3 68403323 68403618 -159120960 + AluSq SINE Alu 1 295 -18 381 194 129 32 chr3 68404181 68404274 -159120304 + MER58A DNA MER1_type 1 102 -5 * 475 108 0 0 chr3 68404271 68404336 -159120242 + MER58A DNA MER1_type 160 224 0 2014 123 3 41 chr3 68404368 68404686 -159119892 - AluSx SINE Alu -6 306 1 196 246 82 75 chr3 68404981 68405115 -159119463 - MIR SINE MIR -45 217 83 241 360 75 20 chr3 68405259 68405406 -159119172 + MIR SINE MIR 108 262 0 325 319 12 38 chr3 68405508 68405736 -159118842 - Charlie8 DNA MER1_type -991 1426 115 393 102 0 0 chr3 68405762 68405821 -159118757 + (CA)n Simple_repeat Simple_repeat 2 60 0 2170 143 5 46 chr3 68405860 68406171 -159118407 - MER46B DNA MER2_type -2499 232 62 2517 59 0 3 chr3 68406171 68406475 -159118103 + AluY SINE Alu 1 303 -8 2170 143 5 46 chr3 68406475 68406534 -159118044 - MER46B DNA MER2_type -2669 62 2 448 383 72 11 chr3 68406652 68406929 -159117649 - L2 LINE L2 -7 3265 2972 327 171 109 4 chr3 68406938 68407080 -159117498 - MER3 DNA MER1_type 0 209 8 800 283 129 45 chr3 68407963 68408383 -159116195 - L2 LINE L2 0 3313 2859 308 305 155 40 chr3 68408430 68408656 -159115922 - L2 LINE L2 -574 2740 2489 381 292 159 0 chr3 68408867 68408980 -159115598 - L2 LINE L2 -3 3269 3139 1216 191 19 0 chr3 68409021 68409236 -159115342 - MER20 DNA MER1_type 0 219 1 236 283 51 71 chr3 68409819 68409973 -159114605 - MIR SINE MIR -8 254 34 1550 160 82 11 chr3 68409973 68410254 -159114324 - AluJb SINE Alu -11 301 1 236 283 51 71 chr3 68410254 68410287 -159114291 - MIR SINE MIR -228 34 2 350 213 160 0 chr3 68410303 68410397 -159114181 - MER117 DNA MER1_type -81 116 8 360 264 95 7 chr3 68413363 68413511 -159111067 + MER103 DNA DNA 1 161 -5 1904 179 92 16 chr3 68415108 68415476 -159109102 + MSTD LTR MaLR 1 396 0 351 305 59 0 chr3 68417246 68417364 -159107214 + L2 LINE L2 3188 3312 -1 2631 160 21 5 chr3 68417441 68417866 -159106712 + MSTB1 LTR MaLR 1 432 0 183 80 0 0 chr3 68419197 68419222 -159105356 + (TTTTG)n Simple_repeat Simple_repeat 1 25 0 3061 183 60 93 chr3 68419814 68420595 -159103983 + MER63C DNA MER1_type 1 703 -357 2273 146 33 28 chr3 68420595 68420957 -159103621 + THE1B LTR MaLR 1 364 0 3061 183 60 93 chr3 68420957 68421178 -159103400 + MER63C DNA MER1_type 703 930 0 567 313 23 18 chr3 68423513 68423730 -159100848 - MIR SINE MIR -17 245 28 210 269 131 42 chr3 68423770 68424067 -159100511 - L2 LINE L2 -51 3221 2841 310 299 84 84 chr3 68427012 68427347 -159097231 - MLT1L LTR MaLR -86 529 195 266 246 0 14 chr3 68427430 68427499 -159097079 - MLT1L LTR MaLR -542 73 6 206 178 22 0 chr3 68427992 68428037 -159096541 + (TA)n Simple_repeat Simple_repeat 2 47 0 597 107 0 0 chr3 68428037 68428121 -159096457 - L1MB3 LINE L1 -9 6174 6091 219 69 0 0 chr3 68428264 68428293 -159096285 + (T)n Simple_repeat Simple_repeat 1 29 0 257 216 20 0 chr3 68429454 68429505 -159095073 + L2 LINE L2 3224 3275 -38 849 194 30 6 chr3 68429695 68429860 -159094718 + MER5A DNA MER1_type 19 187 -2 387 235 10 20 chr3 68430361 68430459 -159094119 + MER94 DNA DNA 2 98 -36 1072 192 9 36 chr3 68430472 68430696 -159093882 + MER20 DNA MER1_type 1 218 -1 275 250 37 102 chr3 68430806 68430914 -159093664 + L2 LINE L2 3200 3300 -13 228 340 148 15 chr3 68431216 68431419 -159093159 - L2 LINE L2 -825 2489 2260 373 254 90 22 chr3 68432527 68432661 -159091917 - MER117 DNA MER1_type -54 143 1 255 311 0 0 chr3 68432672 68432746 -159091832 + MIR SINE MIR 76 149 -59 193 299 10 41 chr3 68433083 68433180 -159091398 + MER5C DNA MER1_type 5 98 -226 303 28 0 0 chr3 68433339 68433375 -159091203 + (CA)n Simple_repeat Simple_repeat 2 37 0 240 309 65 41 chr3 68433897 68434020 -159090558 + MIR SINE MIR 99 224 -38 493 267 176 5 chr3 68434056 68434266 -159090312 + MIR SINE MIR 4 249 -13 2299 70 10 27 chr3 68434447 68434747 -159089831 + AluY SINE Alu 2 296 -15 609 299 47 60 chr3 68435088 68435386 -159089192 + MLT1K LTR MaLR 2 295 -293 32 0 0 0 chr3 68436165 68436197 -159088381 + AT_rich Low_complexity Low_complexity 1 32 0 303 323 73 11 chr3 68436231 68436367 -159088211 + MIR SINE MIR 21 164 -69 610 343 101 20 chr3 68437566 68438180 -159086398 + L2 LINE L2 2497 3184 -129 942 310 68 10 chr3 68439639 68439718 -159084860 - MLT1I LTR MaLR -3 406 333 2639 102 11 6 chr3 68439718 68440071 -159084507 - THE1A LTR MaLR 0 355 1 942 310 68 10 chr3 68440071 68440375 -159084203 - MLT1I LTR MaLR -76 333 1 439 286 36 18 chr3 68440375 68440487 -159084091 + MER91A DNA MER1_type 44 157 -39 223 341 106 8 chr3 68440584 68440707 -159083871 - L2 LINE L2 -1 3271 3137 928 283 63 76 chr3 68441166 68441611 -159082967 + LTR16C LTR ERVL 51 489 -2 2599 121 28 3 chr3 68441800 68442155 -159082423 + THE1B LTR MaLR 1 364 0 202 201 2 94 chr3 68443279 68443348 -159081230 + MIR SINE MIR 42 104 -113 1106 259 144 70 chr3 68444097 68444486 -159080092 - L1MC4 LINE L1 0 8042 7683 198 0 0 0 chr3 68444486 68444508 -159080070 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2136 88 0 11 chr3 68444510 68444795 -159079783 - AluSx SINE Alu -30 282 1 1106 259 144 70 chr3 68444795 68445062 -159079516 - L1MC4 LINE L1 -359 7683 7334 * 1891 199 101 9 chr3 68445053 68445489 -159079089 - L1MC4 LINE L1 -1111 6931 6456 2161 83 59 3 chr3 68445705 68445994 -159078584 + AluSg SINE Alu 1 305 -5 297 324 57 0 chr3 68447235 68447340 -159077238 + MIR SINE MIR 82 192 -70 410 276 69 23 chr3 68447400 68447574 -159077004 - MIR SINE MIR -13 249 68 906 297 95 41 chr3 68447679 68448149 -159076429 - L1M4 LINE L1 -2415 3731 3213 2444 73 0 3 chr3 68448149 68448451 -159076127 + AluY SINE Alu 1 301 -10 906 297 95 41 chr3 68448451 68448644 -159075934 - L1M4 LINE L1 -2933 3213 3032 186 266 228 0 chr3 68449037 68449116 -159075462 - MIR SINE MIR -4 258 162 323 296 230 0 chr3 68449186 68449338 -159075240 + L3 LINE CR1 1305 1491 -86 380 287 33 46 chr3 68449458 68449645 -159074933 + MIR3 SINE MIR 8 186 -22 182 62 31 0 chr3 68450168 68450200 -159074378 + (TTTTTG)n Simple_repeat Simple_repeat 2 34 0 291 300 61 74 chr3 68450819 68450985 -159073593 + MIR SINE MIR 13 177 -85 5686 140 20 2 chr3 68450985 68451861 -159072717 + L1MC1 LINE L1 5433 6324 -9 291 300 61 74 chr3 68451861 68451924 -159072654 + MIR SINE MIR 177 239 -23 608 306 47 17 chr3 68452654 68452886 -159071692 + MIR SINE MIR 4 242 -20 2082 135 0 7 chr3 68454845 68455141 -159069437 - AluSx SINE Alu -18 294 1 12760 196 37 18 chr3 68455842 68459709 -159064869 + L1MB3 LINE L1 28 3819 -2600 240 59 0 0 chr3 68459709 68459743 -159064835 + (CA)n Simple_repeat Simple_repeat 2 35 0 12760 196 37 18 chr3 68459743 68459995 -159064583 + L1MB3 LINE L1 3819 4065 -2354 2329 181 56 7 chr3 68459995 68460403 -159064175 - MSTA LTR MaLR 0 428 1 12760 196 37 18 chr3 68460403 68462348 -159062230 + L1MB3 LINE L1 4065 6419 0 641 345 75 26 chr3 68462536 68462965 -159061613 - LTR16A LTR ERVL 0 450 1 549 248 152 30 chr3 68463282 68463480 -159061098 - MIR SINE MIR -11 251 30 279 272 11 11 chr3 68463727 68463819 -159060759 + Charlie8 DNA MER1_type 49 140 -2277 219 345 103 0 chr3 68464692 68464808 -159059770 - L2 LINE L2 -5 3267 3140 2191 127 0 6 chr3 68464881 68465195 -159059383 - AluSx SINE Alu 0 312 1 338 349 30 12 chr3 68465443 68465609 -159058969 - MIR SINE MIR -47 215 47 670 244 40 109 chr3 68466252 68466526 -159058052 - MIR SINE MIR -6 256 2 1905 159 68 12 chr3 68466692 68467018 -159057560 - MER2 DNA MER2_type 0 344 1 225 231 0 64 chr3 68467042 68467120 -159057458 + MER103 DNA DNA 42 114 -52 1016 241 122 82 chr3 68468841 68469293 -159055285 - MLT1K LTR MaLR -3 473 4 284 254 15 0 chr3 68469410 68469477 -159055101 - L2 LINE L2 -213 3059 2992 441 284 30 30 chr3 68469560 68469694 -159054884 - L2 LINE L2 0 3272 3139 312 27 0 0 chr3 68469905 68469942 -159054636 + (GA)n Simple_repeat Simple_repeat 2 38 0 243 0 0 0 chr3 68471539 68471566 -159053012 + (A)n Simple_repeat Simple_repeat 1 27 0 204 274 27 0 chr3 68471719 68471792 -159052786 - L2 LINE L2 -4 3268 3194 217 259 99 15 chr3 68471939 68472070 -159052508 - L2 LINE L2 -290 2982 2841 261 337 0 0 chr3 68472300 68472395 -159052183 - MIR3 SINE MIR -5 203 109 633 273 91 12 chr3 68472566 68472808 -159051770 + MIR SINE MIR 1 261 -1 381 22 0 0 chr3 68472919 68472965 -159051613 + (TG)n Simple_repeat Simple_repeat 2 47 0 502 309 106 5 chr3 68473188 68473395 -159051183 + MIR SINE MIR 32 259 -3 231 317 89 30 chr3 68474372 68474473 -159050105 - L2 LINE L2 -11 3261 3155 894 228 96 92 chr3 68474699 68474829 -159049749 + MER113 DNA MER1_type? 4 132 -389 2090 118 0 29 chr3 68474829 68475135 -159049443 + AluSx SINE Alu 2 298 -14 894 228 96 92 chr3 68475135 68475203 -159049375 + MER113 DNA MER1_type? 132 198 -323 2799 98 83 2 chr3 68475203 68475599 -159048979 + MSTA LTR MaLR 1 428 0 894 228 96 92 chr3 68475599 68475908 -159048670 + MER113 DNA MER1_type? 198 514 -7 401 318 58 50 chr3 68475960 68476237 -159048341 - L2 LINE L2 -483 2831 2553 911 177 61 11 chr3 68476679 68476860 -159047718 + MER20 DNA MER1_type 30 219 0 2239 109 0 0 chr3 68476956 68477258 -159047320 - AluSc SINE Alu -7 302 1 630 107 0 12 chr3 68478194 68478278 -159046300 + AluS SINE Alu 2 84 -229 25 90 0 0 chr3 68479410 68479477 -159045101 + AT_rich Low_complexity Low_complexity 1 67 0 1107 214 95 52 chr3 68479586 68479932 -159044646 - MLT1A2 LTR MaLR -13 361 1 1037 222 61 5 chr3 68481761 68481973 -159042605 + MER58A DNA MER1_type 1 224 0 295 261 130 0 chr3 68482011 68482103 -159042475 + L2 LINE L2 3191 3294 -19 1230 286 161 23 chr3 68482266 68483321 -159041257 - L2 LINE L2 -5 3308 2091 390 211 118 66 chr3 68483306 68483458 -159041120 - L2 LINE L2 -327 2986 2827 * 685 211 136 53 chr3 68483520 68483748 -159040830 + MIR SINE MIR 16 262 0 293 253 212 0 chr3 68483746 68483845 -159040733 - L2 LINE L2 -577 2737 2618 * 645 264 141 0 chr3 68485391 68485554 -159039024 - MER5A DNA MER1_type 0 189 4 204 313 74 3 chr3 68485576 68485660 -159038918 + MIR SINE MIR 34 121 -87 * 227 307 80 23 chr3 68485658 68485834 -159038744 - L2 LINE L2 -1 3312 3127 879 302 16 0 chr3 68485845 68486087 -159038491 - MIR SINE MIR 0 262 17 1135 225 18 0 chr3 68486088 68486306 -159038272 - MER58A DNA MER1_type -2 222 1 1269 214 76 7 chr3 68486348 68486651 -159037927 - MER33 DNA MER1_type 0 324 1 262 219 31 0 chr3 68486672 68486736 -159037842 - MER5A DNA MER1_type -98 91 26 799 241 100 0 chr3 68487818 68488038 -159036540 + MIR SINE MIR 2 243 -19 203 305 119 81 chr3 68488043 68488253 -159036325 - MIR SINE MIR -42 220 3 198 325 96 0 chr3 68488841 68488924 -159035654 + MIR SINE MIR 78 168 -94 497 230 73 97 chr3 68489572 68489734 -159034844 + MIR SINE MIR 2 145 -117 2383 187 33 24 chr3 68489734 68490194 -159034384 - MLT1C LTR MaLR 0 467 4 497 230 73 97 chr3 68490194 68490297 -159034281 + MIR SINE MIR 145 249 -13 180 77 0 0 chr3 68490382 68490408 -159034170 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 225 257 30 69 chr3 68491966 68492067 -159032511 - L2 LINE L2 -283 2989 2893 349 200 0 67 chr3 68492395 68492485 -159032093 + MIR SINE MIR 90 173 -89 381 237 230 31 chr3 68492578 68492790 -159031788 + MIR SINE MIR 14 248 -14 2256 109 0 0 chr3 68492938 68493231 -159031347 - AluSx SINE Alu -19 293 1 706 292 98 30 chr3 68494383 68494842 -159029736 - L1ME3A LINE L1 -176 5990 5501 513 0 0 0 chr3 68495527 68495584 -159028994 + (TG)n Simple_repeat Simple_repeat 2 58 0 198 286 58 58 chr3 68496580 68496734 -159027844 + L2 LINE L2 2826 2979 -334 204 321 196 0 chr3 68496820 68496932 -159027646 + L2 LINE L2 3180 3313 0 335 125 181 0 chr3 68497007 68497079 -159027499 + MER117 DNA MER1_type 10 94 -103 2688 185 62 43 chr3 68498116 68498556 -159026022 + Tigger7 DNA MER2_type 1 431 -2156 2030 121 31 0 chr3 68498556 68498845 -159025733 + AluSg SINE Alu 5 302 -8 2688 185 62 43 chr3 68498845 68499062 -159025516 + Tigger7 DNA MER2_type 431 2546 -41 726 206 103 0 chr3 68499472 68499618 -159024960 + AluJb SINE Alu 137 297 -15 264 304 222 8 chr3 68501081 68501423 -159023155 + L2 LINE L2 2642 3051 -221 328 205 253 18 chr3 68501663 68501829 -159022749 + MER113 DNA MER1_type? 48 252 -269 372 234 37 0 chr3 68501873 68501980 -159022598 + MER113 DNA MER1_type? 334 444 -77 242 228 228 24 chr3 68502077 68502200 -159022378 + MER117 DNA MER1_type 7 154 -43 341 336 41 94 chr3 68502244 68502583 -159021995 + L2 LINE L2 2944 3264 -8 720 236 23 0 chr3 68503434 68503608 -159020970 - MER104 DNA Tc2 -2 178 1 549 190 172 18 chr3 68503833 68503996 -159020582 - MER53 DNA DNA 0 189 2 273 189 0 19 chr3 68504468 68504521 -159020057 - MIR SINE MIR -114 148 97 607 215 70 35 chr3 68505404 68505576 -159019002 + MER5B DNA MER1_type 1 178 0 406 303 38 38 chr3 68506619 68506804 -159017774 + MIR SINE MIR 57 241 -21 246 239 28 0 chr3 68507386 68507457 -159017121 - Charlie8 DNA MER1_type -4 2413 2341 1819 170 141 5 chr3 68507533 68507910 -159016668 - MSTA LTR MaLR 0 428 1 1086 157 0 0 chr3 68509060 68509213 -159015365 + AluSg/x SINE Alu 137 289 -23 398 158 50 33 chr3 68509251 68509371 -159015207 - MER53 DNA DNA -60 129 8 2795 133 38 68 chr3 68510667 68511214 -159013364 + LTR26B LTR ERV1 1 531 0 543 263 40 33 chr3 68511600 68511752 -159012826 - MIR SINE MIR -94 168 16 787 258 119 8 chr3 68512134 68512495 -159012083 + MER113 DNA MER1_type? 1 401 -120 1959 113 135 0 chr3 68512918 68513237 -159011341 + THE1B LTR MaLR 3 364 0 240 269 45 90 chr3 68516809 68516943 -159007635 + MIR SINE MIR 56 183 -79 252 0 0 0 chr3 68517119 68517147 -159007431 + (A)n Simple_repeat Simple_repeat 1 28 0 1574 208 17 11 chr3 68519039 68519390 -159005188 + MLT1A1 LTR MaLR 1 353 -12 263 167 31 21 chr3 68519393 68519489 -159005089 + (TCTA)n Simple_repeat Simple_repeat 4 100 0 192 297 16 0 chr3 68519507 68519571 -159005007 - MIR SINE MIR -34 228 164 185 291 0 36 chr3 68519630 68519685 -159004893 - MIR SINE MIR -129 79 27 1669 158 67 25 chr3 68519767 68520127 -159004451 - THE1C LTR MaLR 0 375 1 1942 190 40 55 chr3 68520207 68520681 -159003897 - MLT1C LTR MaLR 0 467 1 505 300 58 22 chr3 68520830 68521053 -159003525 - MLT1K LTR MaLR -34 554 324 456 271 110 66 chr3 68521113 68521386 -159003192 - MLT1I LTR MaLR -27 382 98 696 294 121 0 chr3 68522304 68522535 -159002043 + MIR SINE MIR 4 262 0 248 53 26 0 chr3 68522536 68522574 -159002004 + (CAT)n Simple_repeat Simple_repeat 3 41 0 439 205 78 18 chr3 68522657 68522794 -159001784 - MIR SINE MIR -11 251 106 1175 134 84 10 chr3 68523745 68523947 -159000631 - AluJo SINE Alu -10 302 86 234 296 84 42 chr3 68524067 68524209 -159000369 - MLT1I LTR MaLR -191 218 71 315 0 0 0 chr3 68524962 68524997 -158999581 + (CA)n Simple_repeat Simple_repeat 2 36 0 305 216 27 18 chr3 68525846 68525957 -158998621 + (TA)n Simple_repeat Simple_repeat 2 113 0 300 289 21 0 chr3 68525957 68526054 -158998524 - L1MC4 LINE L1 -1339 6703 6605 39 22 0 0 chr3 68526060 68526106 -158998472 + AT_rich Low_complexity Low_complexity 1 46 0 474 237 0 0 chr3 68526124 68526242 -158998336 + (TA)n Simple_repeat Simple_repeat 2 119 0 240 306 14 0 chr3 68526721 68526793 -158997785 + CT-rich Low_complexity Low_complexity 4 76 0 330 324 0 7 chr3 68526850 68526995 -158997583 + MER117 DNA MER1_type 7 150 -47 250 333 48 0 chr3 68527956 68528040 -158996538 + L2 LINE L2 3184 3271 -1 928 312 19 21 chr3 68528158 68528536 -158996042 + LTR16C LTR ERVL 115 491 0 1400 186 48 33 chr3 68529086 68529420 -158995158 - MER44D DNA MER2_type 0 609 1 1625 189 38 0 chr3 68529503 68529794 -158994784 + AluJb SINE Alu 2 303 -9 234 195 0 0 chr3 68530189 68530230 -158994348 - U2 snRNA snRNA -147 41 1 481 179 0 86 chr3 68531933 68532084 -158992494 - MLT1A1 LTR MaLR -66 299 162 241 246 138 0 chr3 68534244 68534309 -158990269 - MIR SINE MIR -5 257 184 326 255 114 54 chr3 68534314 68534570 -158990008 - L1MC4 LINE L1 -5 8037 7798 2268 104 13 0 chr3 68534570 68534879 -158989699 - AluSp SINE Alu 0 313 1 326 255 114 54 chr3 68534879 68535187 -158989391 - L1MC4 LINE L1 -244 7798 7333 391 204 293 7 chr3 68535200 68535347 -158989231 - MER3 DNA MER1_type -16 193 5 230 260 26 0 chr3 68535536 68535613 -158988965 - Charlie4a DNA MER1_type 0 508 430 1348 213 31 0 chr3 68535613 68535867 -158988711 - AluJo SINE Alu 0 312 51 863 252 22 76 chr3 68535868 68536329 -158988249 - Charlie4a DNA MER1_type -72 436 1 355 276 103 26 chr3 68536523 68536639 -158987939 - MIR SINE MIR -117 145 21 483 319 92 11 chr3 68536770 68537052 -158987526 - L3 LINE CR1 -420 1157 853 28 0 0 0 chr3 68537232 68537260 -158987318 + AT_rich Low_complexity Low_complexity 1 28 0 220 160 20 20 chr3 68537323 68537373 -158987205 + (TCCA)n Simple_repeat Simple_repeat 2 51 0 242 288 159 53 chr3 68537373 68537637 -158986941 - L2 LINE L2 0 3313 3022 2173 145 64 7 chr3 68538004 68538166 -158986412 + MER65A LTR ERV1 1 152 -293 408 20 0 0 chr3 68538166 68538215 -158986363 + (CA)n Simple_repeat Simple_repeat 2 50 0 2173 145 64 7 chr3 68538215 68538473 -158986105 + MER65A LTR ERV1 152 445 0 284 319 29 29 chr3 68538694 68538771 -158985807 + Charlie8 DNA MER1_type 1 80 -250 4483 199 27 34 chr3 68538771 68539861 -158984717 - Tigger6a DNA MER2_type 0 1083 2 284 319 29 29 chr3 68539861 68539921 -158984657 + Charlie8 DNA MER1_type 79 138 -192 526 184 157 14 chr3 68540114 68540261 -158984317 - MER3 DNA MER1_type -41 168 1 926 61 23 0 chr3 68640951 68641082 -158883496 - HERVK9 LTR ERVK -148 5768 5635 15054 73 6 0 chr3 68641178 68643197 -158881381 - HERVK9 LTR ERVK -282 5634 3603 24579 76 9 7 chr3 68643219 68646620 -158877958 - HERVK9 LTR ERVK -2507 3409 1 3348 122 8 6 chr3 68646620 68647130 -158877448 - MER9 LTR ERVK 0 511 1 2797 3 0 0 chr3 68647456 68647758 -158876820 - AluYa5 SINE Alu -9 302 1 21 0 0 0 chr3 68648447 68648468 -158876110 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 68649169 68649198 -158875380 + AT_rich Low_complexity Low_complexity 1 29 0 2158 124 7 0 chr3 68649340 68649638 -158874940 + AluSp SINE Alu 3 302 -11 25 0 0 0 chr3 68650309 68650334 -158874244 + AT_rich Low_complexity Low_complexity 1 25 0 201 220 40 0 chr3 68650689 68650739 -158873839 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 1966 139 0 44 chr3 68651933 68652249 -158872329 - AluSg SINE Alu -8 302 1 2052 115 33 10 chr3 68652749 68653053 -158871525 - AluSq SINE Alu -1 312 2 1985 133 7 7 chr3 68653402 68653695 -158870883 + AluSx SINE Alu 3 295 -17 611 268 130 13 chr3 68654485 68654870 -158869708 - L1M4 LINE L1 -1120 5026 4597 360 309 73 0 chr3 68654957 68655093 -158869485 - L1M4 LINE L1 -1572 4574 4429 1722 198 24 54 chr3 68655105 68655548 -158869030 - L1MA4A LINE L1 0 7005 6577 1645 195 7 0 chr3 68655548 68655835 -158868743 + AluJb SINE Alu 1 289 -23 1722 198 24 54 chr3 68655835 68655892 -158868686 - L1MA4A LINE L1 -428 6577 6520 2603 203 57 37 chr3 68655906 68656341 -158868237 - L1MA4A LINE L1 -745 6103 5678 378 57 43 14 chr3 68656341 68656411 -158868167 + (TTTTA)n Simple_repeat Simple_repeat 2 73 0 1648 174 8 0 chr3 68656414 68656678 -158867900 - AluSq SINE Alu -24 289 24 2603 203 57 37 chr3 68656678 68657165 -158867413 - L1MA4A LINE L1 -1171 5677 5215 8076 238 61 50 chr3 68657316 68657562 -158867016 - L1MA4A LINE L1 -2458 4390 4148 1864 142 44 3 chr3 68657562 68657858 -158866720 - AluSg1 SINE Alu -1 308 1 8076 238 61 50 chr3 68657858 68658502 -158866076 - L1MA4A LINE L1 -2700 4148 3512 575 178 44 59 chr3 68658502 68658637 -158865941 - FLAM_C SINE Alu 0 133 1 8076 238 61 50 chr3 68658637 68658658 -158865920 - L1MA4A LINE L1 -3336 3512 3493 1474 200 54 0 chr3 68658658 68658938 -158865640 - AluJo SINE Alu -13 299 5 8076 238 61 50 chr3 68658938 68662364 -158862214 - L1MA4A LINE L1 -3355 3493 9 1181 274 140 41 chr3 68662388 68663592 -158860986 - L1M4 LINE L1 -1757 4389 3005 1374 227 52 0 chr3 68663592 68663861 -158860717 + AluJo SINE Alu 3 285 -27 1181 274 140 41 chr3 68663861 68664160 -158860418 - L1M4 LINE L1 -3141 3005 2737 5868 211 153 11 chr3 68664189 68665669 -158858909 + MER52A LTR ERV1 67 1755 0 418 237 109 11 chr3 68665669 68665952 -158858626 - L1MDb LINE L1 -5046 1363 1053 366 327 75 31 chr3 68665952 68666178 -158858400 + L1M4c LINE L1 182 417 -5896 1329 291 79 16 chr3 68666604 68667646 -158856932 + L1M4c LINE L1 1041 2139 -4244 482 191 91 100 chr3 68667737 68667967 -158856611 + L1M4c LINE L1 2143 2370 -4014 1217 153 13 47 chr3 68667980 68668216 -158856362 - MER57A LTR ERV1 -41 362 135 2095 125 23 0 chr3 68668854 68669157 -158855421 - AluSg SINE Alu 0 310 1 1063 200 10 10 chr3 68669323 68669523 -158855055 + AluJb SINE Alu 1 200 -112 185 269 0 8 chr3 68669572 68669706 -158854872 + (TA)n Simple_repeat Simple_repeat 2 134 0 360 260 32 41 chr3 68669729 68669999 -158854579 + L1M4c LINE L1 2702 3112 -3270 384 249 138 37 chr3 68670014 68670339 -158854239 + L1M4c LINE L1 3331 3688 -2694 574 183 161 0 chr3 68670367 68670504 -158854074 - AluJb SINE Alu -153 159 1 471 214 24 8 chr3 68670606 68670732 -158853846 + L1M4c LINE L1 3720 3847 -2535 1719 209 24 40 chr3 68670737 68670850 -158853728 + L1PA15-16 LINE L1 3 116 -6733 2165 137 0 10 chr3 68670850 68671164 -158853414 + AluSx SINE Alu 1 311 -1 1719 209 24 40 chr3 68671164 68671471 -158853107 + L1PA15-16 LINE L1 116 416 -6433 3902 237 76 96 chr3 68671474 68672506 -158852072 + L1PA15-16 LINE L1 600 1652 -5197 997 177 0 0 chr3 68672506 68672679 -158851899 + AluSg/x SINE Alu 136 308 0 3902 237 76 96 chr3 68672679 68673831 -158850747 + L1PA15-16 LINE L1 1652 3116 -3733 1102 293 75 22 chr3 68673840 68674468 -158850110 - L1MC4a LINE L1 -1708 6100 5440 1046 233 39 16 chr3 68674506 68674764 -158849814 - AluJo SINE Alu -30 282 19 2232 120 3 0 chr3 68674809 68675108 -158849470 - AluSg SINE Alu -10 300 1 461 306 48 77 chr3 68675111 68675487 -158849091 - L1MC4a LINE L1 -754 5392 5032 2158 136 10 0 chr3 68675487 68675796 -158848782 - AluSx SINE Alu 0 312 1 461 306 48 77 chr3 68675796 68675916 -158848662 - L1MC4a LINE L1 -1114 5032 4910 4303 185 39 1 chr3 68676007 68677063 -158847515 - L1PB4 LINE L1 -8 6330 5227 1852 148 0 0 chr3 68677067 68677338 -158847240 + AluSx SINE Alu 1 271 -41 4285 131 10 0 chr3 68677366 68678039 -158846539 - L1PA10 LINE L1 -3 6165 5486 3873 163 7 4 chr3 68678043 68678781 -158845797 + L1P LINE L1 4212 4951 -1195 1016 230 22 4 chr3 68678781 68679055 -158845523 - L1PB4 LINE L1 -1130 5198 4920 243 241 101 0 chr3 68679064 68679143 -158845435 - L1MC4 LINE L1 -1344 6698 6612 21 0 0 0 chr3 68679168 68679189 -158845389 + AT_rich Low_complexity Low_complexity 1 21 0 198 50 75 0 chr3 68679227 68679267 -158845311 + (TA)n Simple_repeat Simple_repeat 2 44 0 1710 176 3 14 chr3 68679267 68679556 -158845022 - AluJb SINE Alu -24 288 3 1186 238 13 16 chr3 68679557 68679646 -158844932 - L1PB4 LINE L1 -1394 4934 4846 198 0 0 0 chr3 68679646 68679668 -158844910 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 1186 238 13 16 chr3 68679668 68679956 -158844622 - L1PB4 LINE L1 -1482 4846 4558 4200 221 76 61 chr3 68679978 68680627 -158843951 - L1PB4 LINE L1 -3310 3018 2380 1550 217 3 6 chr3 68680627 68680940 -158843638 - AluJb SINE Alu 0 312 1 4200 221 76 61 chr3 68680940 68681801 -158842777 - L1PB4 LINE L1 -3948 2380 1534 1820 187 0 3 chr3 68681801 68682095 -158842483 - AluSx SINE Alu -19 293 1 4200 221 76 61 chr3 68682095 68683544 -158841034 - L1PB4 LINE L1 -4794 1534 27 1097 153 67 40 chr3 68683562 68683785 -158840793 - MER30 DNA MER1_type 0 230 2 228 371 9 0 chr3 68683794 68683910 -158840668 + L1M3f LINE L1 458 574 -4754 381 242 63 77 chr3 68684011 68684056 -158840522 + L1M3f LINE L1 661 705 -5547 2201 173 68 15 chr3 68684056 68684523 -158840055 - LTR22B LTR ERVK 0 492 1 381 242 63 77 chr3 68684523 68684691 -158839887 + L1M3f LINE L1 705 874 -5378 2097 138 0 7 chr3 68684691 68684987 -158839591 + AluSx SINE Alu 1 294 -18 381 242 63 77 chr3 68684987 68685068 -158839510 + L1M3f LINE L1 874 1268 -4984 471 149 0 0 chr3 68685089 68685163 -158839415 - AluS SINE Alu -10 302 229 550 219 65 14 chr3 68685173 68685388 -158839190 + L1M3f LINE L1 962 1187 -4141 222 134 45 0 chr3 68685412 68685479 -158839099 + (TA)n Simple_repeat Simple_repeat 1 70 0 21 36 0 0 chr3 68685488 68685516 -158839062 + AT_rich Low_complexity Low_complexity 1 28 0 1299 240 182 42 chr3 68685531 68686142 -158838436 + L1M3f LINE L1 1260 1784 -4544 1149 210 100 15 chr3 68686142 68686413 -158838165 + AluJb SINE Alu 1 294 -8 1299 240 182 42 chr3 68686413 68686502 -158838076 + L1M3f LINE L1 1784 1859 -4469 1950 133 4 7 chr3 68686502 68686809 -158837769 - AluSp SINE Alu 0 310 5 1299 240 182 42 chr3 68686809 68687065 -158837513 + L1M3f LINE L1 1859 2332 -3996 1259 173 4 76 chr3 68687066 68687216 -158837362 + AluSx SINE Alu 3 129 -183 2154 113 3 10 chr3 68687216 68687517 -158837061 + AluSg SINE Alu 1 299 -11 1259 173 4 76 chr3 68687517 68687615 -158836963 + AluSx SINE Alu 129 233 -79 267 233 56 33 chr3 68687623 68687713 -158836865 + LTR9 LTR ERV1 9 100 -512 839 129 9 0 chr3 68687716 68687832 -158836746 + AluSq SINE Alu 1 117 -195 294 95 0 0 chr3 68687832 68687874 -158836704 + (T)n Simple_repeat Simple_repeat 1 42 0 1251 155 0 21 chr3 68687874 68688068 -158836510 + AluSq SINE Alu 100 289 -24 361 174 65 11 chr3 68688241 68688333 -158836245 + LTR25 LTR ERV1 270 366 -428 666 229 28 1 chr3 68688511 68688697 -158835881 + MER61E LTR ERV1 340 773 -6 376 156 0 0 chr3 68688724 68688788 -158835790 + AluS SINE Alu 228 291 -9 902 227 33 115 chr3 68688793 68688855 -158835723 + L1M3f LINE L1 3550 3616 -3949 2198 96 0 20 chr3 68688855 68689148 -158835430 + AluSc SINE Alu 1 287 -22 902 227 33 115 chr3 68689148 68689632 -158834946 + L1M3f LINE L1 3616 4051 -3514 497 129 43 0 chr3 68689684 68689777 -158834801 - L1 LINE L1 -2571 3575 3479 599 201 20 106 chr3 68689826 68690080 -158834498 + L1M3f LINE L1 4054 4285 -3280 654 200 75 0 chr3 68690080 68690200 -158834378 + FLAM_A SINE Alu 5 133 0 264 230 40 20 chr3 68690236 68690336 -158834242 + L1MA8 LINE L1 6187 6288 -3 467 257 71 11 chr3 68690382 68690565 -158834013 - L1M4 LINE L1 -5365 1177 984 213 296 0 0 chr3 68690589 68690660 -158833918 + T-rich Low_complexity Low_complexity 1 71 0 1029 174 107 101 chr3 68690669 68690830 -158833748 - AluY SINE Alu -1 300 135 1179 117 0 0 chr3 68690830 68691010 -158833568 + (TTC)n Simple_repeat Simple_repeat 1 180 0 1029 174 107 101 chr3 68691010 68691146 -158833432 - AluY SINE Alu -166 135 1 373 314 80 29 chr3 68691165 68691404 -158833174 - L1M4 LINE L1 -5769 773 523 877 267 31 16 chr3 68691449 68691914 -158832664 + MER74A LTR ERVL 89 622 0 863 273 92 44 chr3 68691932 68692387 -158832191 - L1M4 LINE L1 -6058 484 8 336 323 74 9 chr3 68692739 68692956 -158831622 + LTR50 LTR ERVL 453 683 -112 500 228 80 25 chr3 68693198 68693266 -158831312 - MER45A DNA AcHobo -1410 171 108 1865 163 30 3 chr3 68693266 68693567 -158831011 + AluSx SINE Alu 1 309 -3 500 228 80 25 chr3 68693567 68693660 -158830918 - MER45A DNA AcHobo -1473 108 1 2736 93 30 5 chr3 68693790 68694218 -158830360 + LTR7 LTR ERV1 1 439 -11 236 190 0 89 chr3 68694838 68694917 -158829661 + GA-rich Low_complexity Low_complexity 4 75 0 2090 128 3 0 chr3 68696057 68696353 -158828225 - AluSg1 SINE Alu -12 297 1 250 267 13 13 chr3 68696505 68696580 -158827998 + MLT1F LTR MaLR 1 75 -467 807 269 47 25 chr3 68696590 68696869 -158827709 + MLT1E LTR MaLR 308 592 -1 314 331 83 6 chr3 68697011 68697180 -158827398 - MIR SINE MIR -72 190 9 335 263 103 67 chr3 68697277 68697501 -158827077 - L1ME3A LINE L1 -146 6024 5793 424 258 27 86 chr3 68697513 68697650 -158826928 + L1ME LINE L1 5051 5172 -974 1646 197 17 14 chr3 68697650 68697940 -158826638 - AluJb SINE Alu -21 291 1 424 258 27 86 chr3 68697940 68698023 -158826555 + L1ME LINE L1 5172 5258 -888 430 320 74 7 chr3 68698161 68698445 -158826133 + L1ME LINE L1 5386 5688 -482 749 226 84 8 chr3 68698491 68698858 -158825720 - Charlie2 DNA MER1_type -75 2787 2393 1339 188 22 43 chr3 68698934 68699211 -158825367 + AluJo SINE Alu 21 291 -21 638 329 71 53 chr3 68699273 68699911 -158824667 + L2 LINE L2 2415 3058 -255 729 244 76 23 chr3 68700046 68700349 -158824229 - Charlie2 DNA MER1_type -540 2322 2004 1267 186 9 0 chr3 68700380 68700601 -158823977 - AluSg/x SINE Alu 0 312 90 1921 146 7 0 chr3 68700405 68700686 -158823892 - AluSx SINE Alu -25 287 5 1956 207 89 109 chr3 68700707 68700946 -158823632 - L1MB2 LINE L1 -39 6132 5890 357 115 16 0 chr3 68700946 68701007 -158823571 - AluSc SINE Alu 0 299 238 1458 113 5 0 chr3 68701008 68701203 -158823375 - AluSc SINE Alu -113 196 1 1956 207 89 109 chr3 68701203 68701752 -158822826 - L1MB2 LINE L1 -280 5891 5299 234 0 0 0 chr3 68701756 68701782 -158822796 + (T)n Simple_repeat Simple_repeat 1 26 0 2465 255 86 43 chr3 68701782 68702669 -158821909 - L1MB2 LINE L1 -941 5205 4253 369 0 0 0 chr3 68702669 68702710 -158821868 + (TG)n Simple_repeat Simple_repeat 2 42 0 2465 255 86 43 chr3 68702710 68703010 -158821568 - L1MB2 LINE L1 -1893 4253 3967 204 40 0 0 chr3 68703037 68703062 -158821516 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 1251 214 4 31 chr3 68703091 68703348 -158821230 - AluJo SINE Alu -57 255 6 717 266 15 0 chr3 68703357 68703560 -158821018 - L1MB2 LINE L1 -2207 3939 3734 246 276 24 24 chr3 68703571 68703698 -158820880 + L1M4c LINE L1 993 1119 -5265 810 228 103 23 chr3 68703700 68703963 -158820615 + AluJo SINE Alu 26 309 -3 353 147 0 15 chr3 68703967 68704035 -158820543 + (GGGGA)n Simple_repeat Simple_repeat 5 71 0 247 81 0 27 chr3 68704036 68704073 -158820505 + (GGAA)n Simple_repeat Simple_repeat 3 38 0 512 295 57 34 chr3 68704085 68704450 -158820128 + L1M4c LINE L1 1128 1786 -4517 534 250 82 2 chr3 68704476 68704710 -158819868 + L1M4c LINE L1 1612 1939 -4443 1082 252 65 10 chr3 68704814 68705517 -158819061 + L1M4c LINE L1 2098 2840 -3542 198 0 0 0 chr3 68705626 68705648 -158818930 + (TC)n Simple_repeat Simple_repeat 2 23 0 * 414 0 0 0 chr3 68705647 68705693 -158818885 + (TTA)n Simple_repeat Simple_repeat 2 47 0 1273 217 62 0 chr3 68705705 68705963 -158818615 - AluJo SINE Alu -30 282 9 3228 248 116 41 chr3 68705971 68707607 -158816971 + L1M4c LINE L1 2919 4676 -1706 303 273 23 0 chr3 68707609 68707697 -158816881 - L1M4c LINE L1 -4851 1533 1444 1806 177 3 0 chr3 68707700 68708000 -158816578 - AluSx SINE Alu -11 301 1 304 221 58 29 chr3 68708271 68708375 -158816203 - L1M4 LINE L1 -2507 3639 3533 183 281 157 34 chr3 68708503 68708592 -158815986 - L2 LINE L2 -584 2730 2631 909 103 87 16 chr3 68708598 68708783 -158815795 - MER4B-int LTR ERV1 -326 6272 6075 6806 70 3 1 chr3 68708805 68709960 -158814618 + L1PA6 LINE L1 4997 6153 -1 22053 133 12 13 chr3 68709960 68713588 -158810990 - L1P LINE L1 -2513 3633 11 2134 107 11 34 chr3 68713608 68713963 -158810615 - MER4B-int LTR ERV1 -614 4401 4055 1945 142 3 0 chr3 68713964 68714252 -158810326 + AluSp SINE Alu 24 312 -1 1681 150 52 0 chr3 68714253 68714520 -158810058 + AluSg SINE Alu 1 281 -29 42340 37 21 2 chr3 68714520 68720550 -158804028 + L1PA2 LINE L1 4 6155 0 8136 141 66 31 chr3 68720578 68722403 -158802175 - MER4B-int LTR ERV1 -1035 5563 3063 1748 148 18 22 chr3 68722403 68722681 -158801897 - AluSq SINE Alu -23 290 14 8136 141 66 31 chr3 68722681 68723020 -158801558 - MER4B-int LTR ERV1 -3535 3063 2737 1047 186 167 5 chr3 68723020 68723241 -158801337 + LTR8 LTR ERV1 1 257 -434 1339 62 8 131 chr3 68723241 68723318 -158801260 - MER4-int LTR ERV1 -4103 2495 2410 2096 134 0 3 chr3 68723318 68723610 -158800968 + AluSx SINE Alu 1 291 -21 1339 62 8 131 chr3 68723610 68723792 -158800786 - MER4-int LTR ERV1 -4188 2410 2268 3376 120 12 6 chr3 68723792 68724300 -158800278 + MER9 LTR ERVK 1 511 0 3657 125 11 21 chr3 68724300 68724874 -158799704 + HERVK9 LTR ERVK 1 568 -5348 * 30619 106 16 23 chr3 68724872 68729399 -158795179 + HERVK9 LTR ERVK 1424 5916 0 3198 127 22 6 chr3 68729399 68729902 -158794676 + MER9 LTR ERVK 1 511 0 2167 128 96 21 chr3 68729902 68730339 -158794239 - MER4B-int LTR ERV1 -4325 2273 1804 1399 116 28 88 chr3 68730337 68730655 -158793923 - MER4B-int LTR ERV1 -4210 1267 931 * 216 67 0 0 chr3 68730655 68730685 -158793893 + (CAA)n Simple_repeat Simple_repeat 2 31 0 1399 116 28 88 chr3 68730685 68730731 -158793847 - MER4B-int LTR ERV1 -4546 931 517 341 183 14 0 chr3 68730730 68730801 -158793777 - MER4B-int LTR ERV1 -6018 580 509 * 1764 176 63 25 chr3 68730818 68731181 -158793397 - LTR10A LTR ERV1 -61 548 172 1246 183 0 0 chr3 68731386 68731594 -158792984 + Harlequin LTR ERV1 6689 6896 0 2912 111 32 14 chr3 68731594 68732035 -158792543 + LTR2 LTR ERV1 1 449 0 2151 105 107 69 chr3 68732087 68732506 -158792072 - MER4B-int LTR ERV1 -6151 447 13 996 188 109 5 chr3 68732519 68732682 -158791896 - MER4B LTR ERV1 0 610 421 996 17 0 0 chr3 68732682 68732800 -158791778 + (TATAA)n Simple_repeat Simple_repeat 3 120 0 996 188 109 5 chr3 68732800 68732838 -158791740 - MER4B LTR ERV1 -189 421 388 299 181 8 44 chr3 68732892 68733019 -158791559 - MER4A LTR ERV1 -223 441 261 288 67 22 22 chr3 68733019 68733064 -158791514 - MER4A LTR ERV1 -566 98 54 24 53 0 0 chr3 68733959 68733997 -158790581 + AT_rich Low_complexity Low_complexity 1 38 0 1994 134 0 50 chr3 68734633 68734734 -158789844 - AluSc SINE Alu -5 304 199 1635 163 148 20 chr3 68734734 68735133 -158789445 + LTR7 LTR ERV1 1 450 0 1994 134 0 50 chr3 68735133 68735351 -158789227 - AluSc SINE Alu -109 200 1 708 201 22 0 chr3 68735842 68735981 -158788597 + FRAM SINE Alu 1 141 -35 1040 264 80 50 chr3 68736045 68736583 -158787995 + LTR10B LTR ERV1 1 544 -3 21 57 0 0 chr3 68736976 68737011 -158787567 + AT_rich Low_complexity Low_complexity 1 35 0 198 0 0 0 chr3 68739486 68739508 -158785070 + (TA)n Simple_repeat Simple_repeat 1 22 0 22 56 0 0 chr3 68739852 68739888 -158784690 + AT_rich Low_complexity Low_complexity 1 36 0 1723 176 10 3 chr3 68739979 68740268 -158784310 - AluSx SINE Alu -21 291 1 2264 88 3 26 chr3 68740470 68740777 -158783801 - AluY SINE Alu -11 300 1 1757 180 7 0 chr3 68741864 68742164 -158782414 - AluSx SINE Alu -10 302 1 207 151 0 38 chr3 68742519 68742572 -158782006 + T-rich Low_complexity Low_complexity 6 56 0 832 282 59 26 chr3 68742578 68742851 -158781727 - AluJo SINE Alu -30 282 1 284 194 73 40 chr3 68742973 68743097 -158781481 - L1MC5 LINE L1 -8 7953 7826 262 336 92 32 chr3 68743218 68743435 -158781143 + MIR SINE MIR 28 257 -5 542 288 68 0 chr3 68745024 68745187 -158779391 + MIR SINE MIR 57 230 -32 1939 124 18 0 chr3 68746009 68746283 -158778295 + AluSg SINE Alu 16 294 -16 266 250 118 0 chr3 68746503 68746537 -158778041 + AluS SINE Alu 1 43 -260 283 127 55 55 chr3 68746537 68746592 -158777986 + LTR30 LTR ERV1 1 55 -667 231 36 0 0 chr3 68747192 68747220 -158777358 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1625 148 42 0 chr3 68747221 68747484 -158777094 - AluSc SINE Alu -35 274 1 23 0 8 0 chr3 68748689 68748749 -158775829 + AT_rich Low_complexity Low_complexity 1 23 0 272 157 20 20 chr3 68748995 68749046 -158775532 - AluSp/q SINE Alu -13 290 240 584 192 100 0 chr3 68749054 68749184 -158775394 - FLAM_C SINE Alu 0 143 1 1031 177 21 30 chr3 68749195 68749432 -158775146 - L1MC2 LINE L1 -20 6324 6090 * 1301 260 120 12 chr3 68749430 68750006 -158774572 + L1M4 LINE L1 3797 4434 -1712 990 222 33 44 chr3 68750055 68750325 -158774253 - HUERS-P3 LTR ERV1 -8400 519 253 362 140 35 0 chr3 68750318 68750375 -158774203 - HUERS-P3 LTR ERV1 -7322 96 38 * 928 254 63 73 chr3 68750426 68750547 -158774031 - LTR9 LTR ERV1 0 612 491 1869 180 7 0 chr3 68750547 68750852 -158773726 + AluSx SINE Alu 1 307 -5 928 254 63 73 chr3 68750852 68751292 -158773286 - LTR9 LTR ERV1 -121 491 22 2093 114 3 7 chr3 68751292 68751581 -158772997 + AluSg SINE Alu 1 288 -22 928 254 63 73 chr3 68751581 68751597 -158772981 - LTR9 LTR ERV1 -590 22 7 1320 239 44 18 chr3 68751624 68752075 -158772503 - L1 LINE L1 -1062 5320 4858 1551 193 20 33 chr3 68752075 68752380 -158772198 - AluJb SINE Alu -5 307 7 860 83 38 0 chr3 68752410 68752542 -158772036 - L1PA13 LINE L1 -2 6161 6025 422 189 168 50 chr3 68752590 68752833 -158771745 - L1M4c LINE L1 -2831 3551 3265 1815 193 3 0 chr3 68752833 68753133 -158771445 - AluSx SINE Alu -11 301 1 422 189 168 50 chr3 68753133 68753186 -158771392 - L1M4c LINE L1 -3117 3265 3220 324 241 80 40 chr3 68753193 68753369 -158771209 - L1M4c LINE L1 -3820 2562 2380 1915 132 11 52 chr3 68753548 68753913 -158770665 + L1MA2 LINE L1 5955 6304 0 1687 259 86 40 chr3 68754066 68755211 -158769367 - L1M4c LINE L1 -4516 1797 972 273 357 36 20 chr3 68755561 68755718 -158768860 - L1M4c LINE L1 -5711 602 440 474 33 0 0 chr3 68755718 68755778 -158768800 + (CA)n Simple_repeat Simple_repeat 1 60 0 273 357 36 20 chr3 68755778 68755816 -158768762 - L1M4c LINE L1 -5873 440 404 288 290 38 8 chr3 68755840 68755971 -158768607 - L1M4c LINE L1 -6005 308 174 1077 261 73 48 chr3 68756051 68757754 -158766824 - L1M4c LINE L1 -2128 4254 2388 1253 197 25 70 chr3 68757754 68758038 -158766540 - AluJb SINE Alu -20 292 22 396 234 58 39 chr3 68758060 68758214 -158766364 - L1M4c LINE L1 -4083 2301 2145 1331 259 65 52 chr3 68758343 68758697 -158765881 - L1M4c LINE L1 -4539 1845 1476 2224 113 3 25 chr3 68758697 68759017 -158765561 - AluSp SINE Alu 0 313 1 1331 259 65 52 chr3 68759017 68759339 -158765239 - L1M4c LINE L1 -4908 1476 1160 2184 137 0 0 chr3 68759404 68759717 -158764861 - AluSq SINE Alu 0 313 1 412 260 111 41 chr3 68759730 68760072 -158764506 - L1 LINE L1 -4861 1280 915 323 171 189 27 chr3 68760550 68760661 -158763917 + LTR47A LTR ERVL 261 389 -63 332 100 33 0 chr3 68760663 68760723 -158763855 - AluSx SINE Alu 0 300 239 1624 161 0 0 chr3 68760753 68760989 -158763589 - AluSx SINE Alu -66 246 11 402 192 13 0 chr3 68761000 68761078 -158763500 + LTR47A LTR ERVL 374 452 0 1006 224 60 46 chr3 68761311 68761812 -158762766 - L1M4c LINE L1 -3953 2693 2186 311 340 0 11 chr3 68761813 68761907 -158762671 - L1M4c LINE L1 -4556 2090 1998 1536 244 75 42 chr3 68761925 68762454 -158762124 - L1M4c LINE L1 -4702 1944 1373 1982 149 3 3 chr3 68762454 68762756 -158761822 - AluSc SINE Alu -5 304 3 1536 244 75 42 chr3 68762756 68763100 -158761478 - L1M4c LINE L1 -5273 1373 1042 40407 38 22 1 chr3 68763101 68769124 -158755454 + L1PA3 LINE L1 3 6155 0 286 280 111 21 chr3 68769236 68769425 -158755153 - L1M4c LINE L1 -5756 786 581 237 282 26 13 chr3 68769696 68769774 -158754804 - L1M4c LINE L1 -6269 273 195 210 122 49 0 chr3 68769827 68769868 -158754710 + (GTTTG)n Simple_repeat Simple_repeat 2 44 0 973 197 30 150 chr3 68770614 68771015 -158753563 + MLT1A1 LTR MaLR 1 353 -12 1231 147 29 17 chr3 68771586 68771910 -158752668 + L1P4 LINE L1 5118 5440 -734 4116 179 38 22 chr3 68771921 68773116 -158751462 + L1P3 LINE L1 10 1439 -5022 2755 196 45 3 chr3 68773132 68773784 -158750794 + L1MA4A LINE L1 2164 2842 -4007 336 188 50 38 chr3 68773785 68773865 -158750713 + MER9 LTR ERVK 1 81 -430 459 55 0 0 chr3 68773882 68773937 -158750641 - AluSc SINE Alu -58 251 197 1468 212 79 17 chr3 68773937 68774342 -158750236 + MER9 LTR ERVK 82 511 0 953 205 30 128 chr3 68774344 68774881 -158749697 + L1MA4A LINE L1 2843 3326 -3522 861 137 23 0 chr3 68774890 68775021 -158749557 + AluSg/x SINE Alu 159 292 -18 3469 227 26 92 chr3 68775036 68775163 -158749415 + L1MA4A LINE L1 3332 3466 -3382 2164 112 14 0 chr3 68775163 68775450 -158749128 + AluSc SINE Alu 1 291 -18 3469 227 26 92 chr3 68775450 68775922 -158748656 + L1MA4A LINE L1 3466 3968 -2880 2155 125 0 31 chr3 68775922 68776242 -158748336 + AluSx SINE Alu 1 310 -2 819 163 0 0 chr3 68776244 68776367 -158748211 + AluSq/x SINE Alu 1 123 -189 3469 227 26 92 chr3 68776367 68777311 -158747267 + L1MA4A LINE L1 3969 4890 -1958 3091 105 21 2 chr3 68777319 68777796 -158746782 - LTR15 LTR ERV1 -7 486 1 11430 23 0 0 chr3 68777796 68779161 -158745417 - HERV15 LTR ERV1 0 8735 7371 3049 44 30 2 chr3 68779161 68779563 -158745015 - L1PA4 LINE L1 -1116 5030 4617 7244 39 2 8 chr3 68779563 68780691 -158743887 + L1PA4 LINE L1 5033 6155 0 58953 40 4 6 chr3 68780700 68788082 -158736496 - HERV15 LTR ERV1 -1362 7373 1 3072 108 15 2 chr3 68788089 68788569 -158736009 - LTR15 LTR ERV1 -7 486 1 3947 191 25 53 chr3 68788591 68789697 -158734881 + L1MA4A LINE L1 4911 6047 -958 1903 149 0 20 chr3 68789697 68789992 -158734586 + AluSg SINE Alu 1 289 -21 3947 191 25 53 chr3 68789992 68790019 -158734559 + L1MA4A LINE L1 6047 6073 -932 1549 215 10 10 chr3 68790019 68790153 -158734425 + AluSx SINE Alu 2 135 -177 2189 120 0 3 chr3 68790153 68790453 -158734125 + AluY SINE Alu 1 299 -12 1549 215 10 10 chr3 68790453 68790606 -158733972 + AluSx SINE Alu 134 289 -23 3947 191 25 53 chr3 68790606 68791073 -158733505 + L1MA4A LINE L1 6073 6484 -521 1167 207 36 4 chr3 68791148 68791423 -158733155 + L1MA4A LINE L1 6711 6994 -11 2646 218 42 53 chr3 68792258 68792351 -158732227 - L1PB4 LINE L1 0 6156 6063 2761 93 56 30 chr3 68792351 68792450 -158732128 - L1PA8 LINE L1 -10 6162 6067 2151 115 0 7 chr3 68792450 68792754 -158731824 - AluSg SINE Alu -8 302 1 2761 93 56 30 chr3 68792754 68793082 -158731496 - L1PA8 LINE L1 -105 6067 5724 2646 218 42 53 chr3 68793082 68794274 -158730304 - L1PB4 LINE L1 -93 6063 4887 278 114 45 0 chr3 68794274 68794318 -158730260 + LTR21A LTR ERV1 1 46 -459 2661 104 42 34 chr3 68794321 68794792 -158729786 + LTR21A LTR ERV1 18 492 -13 2396 220 90 39 chr3 68794792 68794833 -158729745 - L1PB4 LINE L1 -1263 4883 4846 8278 55 2 0 chr3 68794833 68795797 -158728781 + LTR5 LTR ERVK 1 966 -3 2396 220 90 39 chr3 68795797 68795909 -158728669 - L1PB4 LINE L1 -1300 4846 4741 17755 37 2 1 chr3 68795909 68798849 -158725729 - L1PA3 LINE L1 0 6155 3213 2396 220 90 39 chr3 68798849 68799602 -158724976 - L1PB4 LINE L1 -1405 4741 3929 3603 120 20 0 chr3 68799602 68800151 -158724427 + LTR19A-int LTR ERV1 5021 5580 -6 2357 143 34 58 chr3 68800157 68800655 -158723923 + LTR19A LTR ERV1 1 486 0 2721 132 38 4 chr3 68800655 68801103 -158723475 + LTR9B LTR ERV1 179 644 0 317 259 12 0 chr3 68801114 68801199 -158723379 - L1PB4 LINE L1 -3469 2677 2592 1387 152 64 17 chr3 68801199 68801529 -158723049 - MER4A LTR ERV1 0 664 261 620 131 0 10 chr3 68801529 68801628 -158722950 - MER4A LTR ERV1 -566 98 1 793 217 14 14 chr3 68801628 68801849 -158722729 - L1PB4 LINE L1 -3551 2595 2375 26 0 0 0 chr3 68801990 68802016 -158722562 + AT_rich Low_complexity Low_complexity 1 26 0 2301 117 119 5 chr3 68802078 68802480 -158722098 - LTR7 LTR ERV1 -2 448 1 2102 92 9 51 chr3 68802668 68802984 -158721594 - AluSg SINE Alu -7 303 1 1856 169 0 19 chr3 68803212 68803526 -158721052 + AluSx SINE Alu 1 308 -4 2103 132 12 93 chr3 68805050 68805340 -158719238 + MER51B LTR ERV1 1 250 -127 2104 138 0 3 chr3 68805340 68805638 -158718940 - AluSq SINE Alu -16 297 1 2103 132 12 93 chr3 68805638 68805757 -158718821 + MER51B LTR ERV1 250 377 0 795 132 58 46 chr3 68805757 68805931 -158718647 + MER51B-int LTR ERV1 1 176 -7640 3538 173 12 59 chr3 68805944 68806210 -158718368 + MER51B-int LTR ERV1 417 694 -7122 2452 193 26 93 chr3 68806210 68806950 -158717628 + LTR8 LTR ERV1 1 690 -1 3538 173 12 59 chr3 68806950 68807493 -158717085 + MER51B-int LTR ERV1 694 1188 -6628 2643 138 20 37 chr3 68807493 68807639 -158716939 - LTR10B LTR ERV1 0 505 358 324 0 0 0 chr3 68807639 68807675 -158716903 + (TTG)n Simple_repeat Simple_repeat 2 37 0 2643 138 20 37 chr3 68807675 68808036 -158716542 - LTR10B LTR ERV1 -147 358 7 13048 126 49 23 chr3 68808042 68808898 -158715680 + MER51B-int LTR ERV1 1184 2016 -5800 2267 117 7 0 chr3 68808898 68809205 -158715373 + AluSq SINE Alu 1 309 -4 13048 126 49 23 chr3 68809205 68809665 -158714913 + MER51B-int LTR ERV1 2016 2462 -5354 1793 188 0 0 chr3 68809665 68809958 -158714620 - AluSx SINE Alu -19 293 1 13048 126 49 23 chr3 68809958 68811081 -158713497 + MER51B-int LTR ERV1 2462 3698 -4118 2177 141 52 74 chr3 68811081 68811578 -158713000 - LTR19A LTR ERV1 0 486 1 13048 126 49 23 chr3 68811578 68811701 -158712877 + MER51B-int LTR ERV1 3698 3816 -4000 1332 181 36 4 chr3 68811704 68811981 -158712597 + MER51B-int LTR ERV1 1711 1996 -3221 1187 127 11 2 chr3 68811973 68812257 -158712321 + MER51B-int LTR ERV1 4655 5004 -2533 * 10290 140 61 23 chr3 68812258 68812744 -158711834 + MER51B-int LTR ERV1 5259 5725 -2091 1876 164 0 17 chr3 68812744 68813042 -158711536 - AluSx SINE Alu -19 293 1 10290 140 61 23 chr3 68813042 68814865 -158709713 + MER51B-int LTR ERV1 5725 7816 0 2026 146 0 81 chr3 68814866 68815276 -158709302 + MER51B LTR ERV1 1 377 0 234 289 0 0 chr3 68815945 68816021 -158708557 - L1 LINE L1 -3805 3043 2968 455 212 35 0 chr3 68816021 68816106 -158708472 - AluJ/FLAM SINE Alu -222 90 3 2260 270 55 116 chr3 68816108 68817658 -158706920 - L1 LINE L1 -5159 1690 263 1780 84 84 22 chr3 68817658 68817790 -158706788 + AluSq SINE Alu 8 130 -183 1998 76 6 89 chr3 68817790 68818106 -158706472 + AluY SINE Alu 6 295 -16 1780 84 84 22 chr3 68818106 68818246 -158706332 + AluSq SINE Alu 130 297 -16 2260 270 55 116 chr3 68818246 68818482 -158706096 - L1 LINE L1 -6586 263 14 32 43 0 0 chr3 68819026 68819072 -158705506 + AT_rich Low_complexity Low_complexity 1 46 0 261 125 16 16 chr3 68819319 68819383 -158705195 + L1MD3 LINE L1 7932 7995 0 388 274 84 60 chr3 68819385 68819600 -158704978 + L1MEd LINE L1 1014 1233 -4886 2984 195 86 29 chr3 68820039 68821181 -158703397 + L1MB4 LINE L1 4982 6180 0 2059 145 3 0 chr3 68821192 68821489 -158703089 + AluSq SINE Alu 1 298 -15 34089 94 7 27 chr3 68821713 68827989 -158696589 - L1PA6 LINE L1 0 6154 11 1885 139 58 10 chr3 68828501 68828796 -158695782 - AluSc SINE Alu 0 309 1 309 200 75 0 chr3 68828803 68828883 -158695695 + L2 LINE L2 3220 3305 -8 555 270 70 90 chr3 68828922 68829549 -158695029 + L1MEd LINE L1 2400 5965 -1826 2186 106 0 27 chr3 68829708 68830009 -158694569 - AluY SINE Alu -18 293 1 3245 110 4 0 chr3 68830017 68830499 -158694079 - LTR19A LTR ERV1 -2 484 1 3172 103 7 0 chr3 68830499 68830957 -158693621 - LTR19A-int LTR ERV1 0 5586 5126 1963 86 17 7 chr3 68830952 68831244 -158693334 - LTR19A-int LTR ERV1 -1205 4381 4087 * 738 94 39 8 chr3 68831303 68831431 -158693147 - LTR19A-int LTR ERV1 -2091 3495 3364 2311 91 0 0 chr3 68831535 68831831 -158692747 - AluY SINE Alu -15 296 1 26 0 0 0 chr3 68831910 68831936 -158692642 + AT_rich Low_complexity Low_complexity 1 26 0 3117 77 4 2 chr3 68831937 68832391 -158692187 - LTR19A-int LTR ERV1 -2130 3456 3002 239 240 10 100 chr3 68832391 68832491 -158692087 + MLT1C LTR MaLR 63 153 -314 2000 145 0 3 chr3 68832501 68832797 -158691781 - AluSx SINE Alu -5 307 13 6062 202 40 16 chr3 68832805 68835230 -158689348 - L1PB1 LINE L1 -174 5977 3514 1500 148 129 11 chr3 68835241 68835505 -158689073 - AluSg1 SINE Alu -14 295 1 4227 245 93 13 chr3 68835527 68837241 -158687337 - L1 LINE L1 -1669 4365 2514 363 271 136 0 chr3 68837245 68837363 -158687215 - L1 LINE L1 -3472 2562 2429 2968 205 54 31 chr3 68837449 68837720 -158686858 - L1PB4 LINE L1 -33 6123 5860 1707 163 14 17 chr3 68837720 68838009 -158686569 - AluSq SINE Alu -1 312 25 2968 205 54 31 chr3 68838009 68838687 -158685891 - L1PB4 LINE L1 -296 5860 5149 17702 158 18 14 chr3 68838696 68840009 -158684569 + L1PA11 LINE L1 1729 3036 -3138 2301 116 3 0 chr3 68840009 68840320 -158684258 + AluSq SINE Alu 1 312 -1 17702 158 18 14 chr3 68840320 68842234 -158682344 + L1PA11 LINE L1 3036 4941 -1233 441 81 0 0 chr3 68842234 68842296 -158682282 + (TG)n Simple_repeat Simple_repeat 1 62 0 1822 130 14 7 chr3 68842300 68842576 -158682002 - AluSq SINE Alu -35 278 1 17702 158 18 14 chr3 68842576 68843771 -158680807 + L1PA11 LINE L1 4943 6174 0 697 305 51 83 chr3 68843776 68844378 -158680200 - L1 LINE L1 -5166 789 11 6112 239 34 14 chr3 68844381 68845898 -158678680 - ERVL LTR ERVL -843 4921 3374 6040 233 49 45 chr3 68845909 68846904 -158677674 - ERVL LTR ERVL -2597 3167 2160 216 0 0 0 chr3 68846904 68846928 -158677650 + (TA)n Simple_repeat Simple_repeat 2 25 0 6040 233 49 45 chr3 68846928 68847762 -158676816 - ERVL LTR ERVL -3604 2160 1331 2661 210 35 66 chr3 68847785 68847939 -158676639 - L1MB3 LINE L1 0 6183 6026 2519 47 0 3 chr3 68847939 68848236 -158676342 + AluY SINE Alu 1 296 -15 2661 210 35 66 chr3 68848236 68848956 -158675622 - L1MB3 LINE L1 -157 6026 5336 1444 286 67 15 chr3 68848956 68849441 -158675137 - ERVL LTR ERVL -4431 1333 818 1776 183 66 43 chr3 68849441 68849863 -158674715 - MSTB1 LTR MaLR 0 432 1 1444 286 67 15 chr3 68849863 68849901 -158674677 - ERVL LTR ERVL -4946 818 783 280 171 37 49 chr3 68849961 68850043 -158674535 - L1MCa LINE L1 -4533 1893 1813 198 0 0 0 chr3 68850222 68850244 -158674334 + (T)n Simple_repeat Simple_repeat 1 22 0 2240 185 60 127 chr3 68850574 68851212 -158673366 - L1MCa LINE L1 -4539 1887 1208 1019 159 15 5 chr3 68851212 68851407 -158673171 - L1MA3 LINE L1 -11 6294 6098 2240 185 60 127 chr3 68851407 68852053 -158672525 - L1MCa LINE L1 -5218 1208 505 9983 226 44 25 chr3 68852072 68853655 -158670923 - L1PB4 LINE L1 0 6858 5307 2367 41 0 24 chr3 68853655 68853945 -158670633 - AluY SINE Alu -9 302 20 9983 226 44 25 chr3 68853945 68856851 -158667727 - L1PB4 LINE L1 -1551 5307 2267 927 297 104 15 chr3 68857649 68857976 -158666602 - L1PB4 LINE L1 -6484 365 10 1655 248 36 32 chr3 68857985 68858452 -158666126 - L1MCa LINE L1 -5939 487 19 1613 203 36 49 chr3 68858499 68858968 -158665610 - L1MB4 LINE L1 -40 6140 5678 1898 181 58 34 chr3 68858968 68859393 -158665185 + MSTB1 LTR MaLR 1 427 -5 929 221 104 71 chr3 68859427 68860006 -158664572 - L1MB4 LINE L1 -532 5651 5055 2019 136 10 3 chr3 68860006 68860301 -158664277 - AluSg SINE Alu -2 308 12 929 221 104 71 chr3 68860301 68860425 -158664153 - L1MB4 LINE L1 -1128 5055 4937 29932 74 11 4 chr3 68860437 68865306 -158659272 - L1PA6 LINE L1 0 6154 1256 455 276 54 5 chr3 68865352 68865537 -158659041 - L1MB4 LINE L1 -1276 4870 4677 1841 158 0 3 chr3 68865566 68865885 -158658693 - AluSx SINE Alu 0 318 1 1716 267 59 12 chr3 68865888 68866098 -158658480 - L1MB4 LINE L1 -1670 4476 4277 330 26 0 0 chr3 68866098 68866137 -158658441 + (TG)n Simple_repeat Simple_repeat 2 40 0 1716 267 59 12 chr3 68866137 68866185 -158658393 - L1MB4 LINE L1 -1869 4277 4233 1265 237 0 42 chr3 68866185 68866493 -158658085 - AluJo SINE Alu -5 297 3 1716 267 59 12 chr3 68866493 68866910 -158657668 - L1MB4 LINE L1 -1913 4233 3768 472 284 108 45 chr3 68866924 68867681 -158656897 - L1MDa LINE L1 -4179 2361 1557 7158 59 1 2 chr3 68867743 68869374 -158655204 - L1PA5 LINE L1 0 6154 4525 8295 73 2 17 chr3 68869374 68870337 -158654241 + L1P LINE L1 1644 2588 -3558 2772 10 0 13 chr3 68870337 68870649 -158653929 + AluYa5 SINE Alu 1 308 -3 8295 73 2 17 chr3 68870649 68870838 -158653740 + L1P LINE L1 2588 2778 -3368 6459 211 123 55 chr3 68872263 68873224 -158651354 + L1M4c LINE L1 17 910 -5474 2084 136 3 3 chr3 68873224 68873534 -158651044 + AluSq SINE Alu 1 310 -3 6459 211 123 55 chr3 68873534 68874896 -158649682 + L1M4c LINE L1 910 2500 -3884 638 344 26 70 chr3 68874910 68875289 -158649289 + L1PA16 LINE L1 788 1129 -6445 1895 146 3 3 chr3 68875289 68875576 -158649002 - AluSx SINE Alu -17 295 9 638 344 26 70 chr3 68875576 68875841 -158648737 + L1PA16 LINE L1 1129 1404 -6170 2477 252 33 48 chr3 68876354 68877507 -158647071 + L1PA16 LINE L1 2185 3335 -4249 * 6435 212 33 50 chr3 68877503 68879332 -158645246 + L1PA16 LINE L1 4809 6569 -1035 1533 157 58 41 chr3 68879332 68879626 -158644952 + AluSq SINE Alu 1 299 -14 6435 212 33 50 chr3 68879626 68880636 -158643942 + L1PA16 LINE L1 6569 7595 -9 564 207 101 52 chr3 68880651 68880874 -158643704 + MER31-int LTR ERV1 2893 3589 -1347 419 245 27 62 chr3 68880882 68881072 -158643506 + L1M4c LINE L1 3071 3254 -3128 * 2125 212 50 43 chr3 68881065 68881721 -158642857 + L1M4c LINE L1 3477 4137 -2245 1332 204 0 0 chr3 68881723 68881954 -158642624 + AluJb SINE Alu 64 294 -18 1862 235 33 29 chr3 68881955 68882538 -158642040 + L1M4c LINE L1 4122 4706 -1676 * 4493 189 22 46 chr3 68882536 68883415 -158641163 + L1PA15 LINE L1 4622 5520 -645 1923 152 3 3 chr3 68883415 68883717 -158640861 + AluSx SINE Alu 1 302 -10 4493 189 22 46 chr3 68883717 68883731 -158640847 + L1PA15 LINE L1 5520 5533 -632 1855 143 25 4 chr3 68883731 68884010 -158640568 + AluSx SINE Alu 6 290 -22 4493 189 22 46 chr3 68884010 68884694 -158639884 + L1PA15 LINE L1 5533 6163 -2 736 265 32 26 chr3 68884687 68884996 -158639582 + L1MA5 LINE L1 3378 3688 -2458 * 2517 147 111 23 chr3 68885045 68885612 -158638966 - MER4B LTR ERV1 0 779 1 2639 208 68 6 chr3 68885612 68886318 -158638260 + L1MA5 LINE L1 3764 4513 -1633 3178 198 19 18 chr3 68886329 68887052 -158637526 + L1MA5 LINE L1 5567 6290 -10 724 150 100 12 chr3 68887134 68887294 -158637284 + L1MA8 LINE L1 6115 6288 -3 1287 222 68 4 chr3 68887308 68887574 -158637004 + AluJb SINE Alu 5 287 -25 2085 222 30 45 chr3 68887932 68888509 -158636069 + L1MA9 LINE L1 5325 5892 -420 869 335 49 10 chr3 68888521 68888930 -158635648 + L1 LINE L1 14 438 -4890 40644 69 5 6 chr3 68889222 68895381 -158629197 - L1PA5 LINE L1 0 6154 2 500 344 5 41 chr3 68895417 68895635 -158628943 + L1 LINE L1 485 694 -4634 2024 137 0 16 chr3 68895637 68895950 -158628628 + AluSx SINE Alu 5 312 0 1243 218 10 34 chr3 68895957 68896255 -158628323 + AluJb SINE Alu 1 291 -11 3490 233 61 6 chr3 68896263 68897390 -158627188 + L1 LINE L1 2517 3705 -2623 1940 170 11 19 chr3 68897390 68897687 -158626891 + L1PA16 LINE L1 5469 5764 -402 1698 199 117 8 chr3 68897687 68898073 -158626505 - MSTA LTR MaLR 0 428 1 1940 170 11 19 chr3 68898073 68898152 -158626426 + L1PA16 LINE L1 5764 5842 -324 301 153 59 82 chr3 68898151 68898236 -158626342 + L1PA16 LINE L1 6066 6148 -18 * 1044 196 75 0 chr3 68898283 68898523 -158626055 + L1 LINE L1 3692 3949 -2379 3764 104 4 21 chr3 68898530 68899088 -158625490 + LTR14 LTR ERVK 1 548 0 19684 107 16 30 chr3 68899088 68900029 -158624549 + HERVKC4 LTR ERVK 1 954 -4308 2273 86 3 13 chr3 68900029 68900332 -158624246 + AluY SINE Alu 2 301 -10 19684 107 16 30 chr3 68900332 68904612 -158619966 + HERVKC4 LTR ERVK 954 5154 -108 3753 40 21 2 chr3 68904612 68905088 -158619490 + LTR2B LTR ERV1 6 490 0 353 214 48 0 chr3 68905088 68905172 -158619406 + HERVKC4 LTR ERVK 5150 5237 -25 3721 111 4 21 chr3 68905195 68905753 -158618825 + LTR14 LTR ERVK 1 548 0 5670 221 23 15 chr3 68905755 68906611 -158617967 + L1 LINE L1 3953 4829 -1499 1924 121 4 7 chr3 68906611 68906883 -158617695 - AluSq SINE Alu -13 300 30 5670 221 23 15 chr3 68906883 68907603 -158616975 + L1 LINE L1 4829 5542 -786 40272 51 8 1 chr3 68907603 68913713 -158610865 + L1PA4 LINE L1 1 6147 -8 496 336 100 59 chr3 68913748 68914461 -158610117 + L1M2 LINE L1 30 896 -6313 1859 264 123 28 chr3 68915171 68916392 -158608186 + L1M2 LINE L1 1850 3237 -3972 387 359 56 37 chr3 68916399 68916722 -158607856 + L1PA13 LINE L1 2 330 -6457 28 29 0 0 chr3 68917460 68917495 -158607083 + AT_rich Low_complexity Low_complexity 1 35 0 250 185 32 85 chr3 68917505 68917694 -158606884 + (TTAA)n Simple_repeat Simple_repeat 1 179 0 247 154 26 77 chr3 68917757 68917874 -158606704 + (TTAA)n Simple_repeat Simple_repeat 3 113 0 1663 63 10 5 chr3 68917958 68918165 -158606413 - AluY SINE Alu -15 296 89 38 22 0 0 chr3 68918615 68918660 -158605918 + AT_rich Low_complexity Low_complexity 1 45 0 33 0 0 0 chr3 68918719 68918752 -158605826 + AT_rich Low_complexity Low_complexity 1 33 0 2224 59 0 0 chr3 68918752 68919025 -158605553 - AluY SINE Alu -2 309 37 2184 123 3 0 chr3 68919056 68919358 -158605220 + AluSp SINE Alu 1 303 -10 1734 142 37 71 chr3 68919367 68919776 -158604802 - L1MB1 LINE L1 -5 6163 5769 4106 209 53 11 chr3 68919781 68921678 -158602900 - L1MA7 LINE L1 0 6291 4336 541 195 122 18 chr3 68921692 68921856 -158602722 - L1MA9 LINE L1 -40 6272 6092 1074 257 101 28 chr3 68921869 68922455 -158602123 - L1MEc LINE L1 -3427 2788 2202 371 239 11 0 chr3 68923164 68923252 -158601326 + MER70B LTR ERVL 77 165 -413 * 1595 271 57 11 chr3 68923247 68923704 -158600874 + MER70B LTR ERVL 92 569 -9 2308 83 20 3 chr3 68923991 68924292 -158600286 - AluY SINE Alu -4 307 2 189 304 62 36 chr3 68924763 68924875 -158599703 - MIR SINE MIR -25 237 123 339 233 174 32 chr3 68926520 68926739 -158597839 - L1ME1 LINE L1 -122 6044 5795 1161 193 37 30 chr3 68926794 68927064 -158597514 + L1PB4 LINE L1 5885 6156 0 2037 113 28 3 chr3 68927094 68927378 -158597200 - AluSx SINE Alu -17 295 5 4928 103 35 1 chr3 68927400 68928141 -158596437 + L1PA5 LINE L1 5389 6154 0 1103 167 55 5 chr3 68928143 68928425 -158596153 + L1MA6 LINE L1 5514 5839 -315 360 235 6 0 chr3 68928419 68928517 -158596061 + L1MA7 LINE L1 6183 6284 -7 * 203 152 0 0 chr3 68928567 68928600 -158595978 + T-rich Low_complexity Low_complexity 5 37 0 401 192 20 0 chr3 68929091 68929190 -158595388 - L1MB3 LINE L1 -1 6182 6082 22 35 0 0 chr3 68929499 68929528 -158595050 + AT_rich Low_complexity Low_complexity 1 29 0 2062 142 3 0 chr3 68929585 68929881 -158594697 + AluSx SINE Alu 1 297 -15 21 57 0 0 chr3 68929917 68929952 -158594626 + AT_rich Low_complexity Low_complexity 1 35 0 422 128 0 70 chr3 68929975 68930061 -158594517 + MADE1 DNA Mariner 1 80 0 8908 142 20 19 chr3 68930077 68930465 -158594113 + MER50-int LTR ERV1 5453 5839 -1366 2010 116 3 14 chr3 68930465 68930758 -158593820 - AluY SINE Alu -21 290 1 8908 142 20 19 chr3 68930758 68931218 -158593360 + MER50-int LTR ERV1 5839 6297 -908 1982 143 22 36 chr3 68931218 68931583 -158592995 + THE1B LTR MaLR 5 364 0 8908 142 20 19 chr3 68931583 68932288 -158592290 + MER50-int LTR ERV1 6297 7008 -197 1126 187 262 6 chr3 68932288 68932651 -158591927 + LTR46 LTR ERV1 5 460 0 1160 115 49 0 chr3 68932651 68932834 -158591744 + MER50-int LTR ERV1 7013 7204 -1 1344 247 68 61 chr3 68932837 68933424 -158591154 + MER50 LTR ERV1 14 604 -130 32 43 0 0 chr3 68933612 68933658 -158590920 + AT_rich Low_complexity Low_complexity 1 46 0 3767 271 83 21 chr3 68934232 68935871 -158588707 + L1 LINE L1 880 2619 -4230 1667 198 21 28 chr3 68935993 68936422 -158588156 + L1 LINE L1 4691 5116 -1732 990 265 77 0 chr3 68936424 68936684 -158587894 + AluJb SINE Alu 3 282 -30 194 61 0 30 chr3 68936691 68936724 -158587854 + (TAA)n Simple_repeat Simple_repeat 2 33 0 3124 210 29 8 chr3 68936724 68937523 -158587055 + L1 LINE L1 5111 5926 -922 1648 212 24 33 chr3 68937543 68937960 -158586618 - MER66B LTR ERV1 0 486 74 1276 54 0 0 chr3 68937960 68938126 -158586452 + LTR13 LTR ERVK 1 166 -841 2903 47 42 0 chr3 68938135 68938518 -158586060 + LTR13 LTR ERVK 609 1007 0 8579 173 34 6 chr3 68938534 68940138 -158584440 - MER66-int LTR ERV1 -370 6306 4658 669 203 92 0 chr3 68940139 68940292 -158584286 + MSTA LTR MaLR 261 427 -1 669 314 19 28 chr3 68940440 68940864 -158583714 - MER66-int LTR ERV1 -1785 5971 5552 1293 107 0 0 chr3 68940902 68941071 -158583507 - AluSg/x SINE Alu -10 302 134 1998 147 7 0 chr3 68941071 68941370 -158583208 - AluSx SINE Alu -11 301 1 2344 331 60 46 chr3 68941391 68942468 -158582110 - MER66-int LTR ERV1 -2263 5493 4433 2100 148 98 25 chr3 68942468 68942867 -158581711 + MSTA LTR MaLR 1 428 0 2344 331 60 46 chr3 68942867 68944881 -158579697 - MER66-int LTR ERV1 -3323 4433 2372 4048 151 34 41 chr3 68944881 68945872 -158578706 + MER11C LTR ERVK 1 1071 0 6238 173 24 47 chr3 68945872 68946363 -158578215 - MER66-int LTR ERV1 -4047 2629 2129 1769 142 6 85 chr3 68946363 68946693 -158577885 + AluSx SINE Alu 1 304 -8 6238 173 24 47 chr3 68946693 68947511 -158577067 - MER66-int LTR ERV1 -4547 2129 1349 604 276 6 29 chr3 68947686 68947856 -158576722 - MER66-int LTR ERV1 -3573 3103 2938 2854 207 63 30 chr3 68947931 68948656 -158575922 - MER66-int LTR ERV1 -5586 1090 342 276 196 18 0 chr3 68948880 68948936 -158575642 - MER66B LTR ERV1 0 486 430 513 210 30 0 chr3 68948942 68949042 -158575536 + FRAM SINE Alu 40 142 -34 1160 244 55 6 chr3 68949064 68949409 -158575169 + L1MA5 LINE L1 5782 6143 -157 943 131 7 7 chr3 68949409 68949546 -158575032 + AluSq/x SINE Alu 1 137 -176 1867 171 0 3 chr3 68949548 68949846 -158574732 + AluSq SINE Alu 5 301 -12 593 200 36 30 chr3 68949846 68950011 -158574567 + L1MA5 LINE L1 6131 6296 -4 3264 103 10 25 chr3 68950407 68950919 -158573659 - L1PA8A LINE L1 0 6131 5628 234 0 0 0 chr3 68950920 68950946 -158573632 + (TTG)n Simple_repeat Simple_repeat 1 26 0 1678 173 59 0 chr3 68950947 68951236 -158573342 - AluSx SINE Alu -6 306 1 2251 103 3 0 chr3 68951543 68951843 -158572735 + AluSp SINE Alu 1 301 -12 1176 198 17 13 chr3 68951999 68952231 -158572347 - AluJo SINE Alu -8 304 72 1664 176 44 0 chr3 68952439 68952712 -158571866 + AluSx SINE Alu 5 289 -23 617 319 93 0 chr3 68952884 68953132 -158571446 + L1M3e LINE L1 710 980 -6050 360 316 67 14 chr3 68953133 68953490 -158571088 + L1M3e LINE L1 2057 2432 -4605 924 185 37 46 chr3 68953747 68953963 -158570615 + AluJo SINE Alu 87 300 -12 1819 177 3 0 chr3 68954116 68954410 -158570168 + AluSx SINE Alu 1 295 -17 181 250 103 0 chr3 68954438 68954506 -158570072 + L2 LINE L2 2149 2223 -1091 35 41 0 0 chr3 68954542 68954591 -158569987 + AT_rich Low_complexity Low_complexity 1 49 0 1252 280 91 64 chr3 68955050 68955899 -158568679 + L1MDa LINE L1 9 834 -5706 2093 157 30 50 chr3 68955899 68956340 -158568238 - MSTB1 LTR MaLR 0 432 1 1252 280 91 64 chr3 68956340 68956384 -158568194 + L1MDa LINE L1 834 875 -5665 2019 119 0 0 chr3 68956384 68956653 -158567925 - AluSx SINE Alu -15 297 29 1252 280 91 64 chr3 68956653 68956883 -158567695 + L1MDa LINE L1 875 1476 -5064 25 0 0 0 chr3 68958440 68958465 -158566113 + AT_rich Low_complexity Low_complexity 1 25 0 251 250 111 9 chr3 68958877 68958985 -158565593 + L1MC5 LINE L1 7783 7901 -60 337 211 11 21 chr3 68959122 68959217 -158565361 + L1ME3A LINE L1 6069 6162 -8 325 200 56 0 chr3 68959351 68959441 -158565137 + L1MDa LINE L1 1567 1661 -4879 333 244 0 0 chr3 68959441 68959527 -158565051 + (TATATG)n Simple_repeat Simple_repeat 3 88 0 1216 191 110 61 chr3 68959568 68959654 -158564924 + L1MDa LINE L1 1664 1744 -4796 1876 145 3 11 chr3 68959654 68959961 -158564617 + AluSq SINE Alu 4 308 0 1216 191 110 61 chr3 68959961 68960107 -158564471 + L1MDa LINE L1 1744 1881 -4659 1861 172 0 0 chr3 68960107 68960392 -158564186 + AluSx SINE Alu 5 289 -23 1216 191 110 61 chr3 68960392 68960601 -158563977 + L1MDa LINE L1 1881 2129 -4411 1531 235 84 21 chr3 68960628 68961104 -158563474 + L1MD1 LINE L1 5732 6237 -5 2068 148 0 3 chr3 68961268 68961578 -158563000 - AluSx SINE Alu -3 309 1 1994 116 4 0 chr3 68961600 68961867 -158562711 - AluSq SINE Alu -12 301 34 21 36 0 0 chr3 68961867 68961895 -158562683 + AT_rich Low_complexity Low_complexity 1 28 0 328 187 56 93 chr3 68961895 68961938 -158562640 + Tigger2 DNA MER2_type 2615 2658 -60 1450 171 84 14 chr3 68961938 68962225 -158562353 + AluSx SINE Alu 1 307 -5 328 187 56 93 chr3 68962225 68962288 -158562290 + Tigger2 DNA MER2_type 2658 2717 -1 478 185 76 42 chr3 68962350 68962630 -158561948 - LTR54 LTR ERV1 -113 397 49 22 0 0 0 chr3 68963025 68963047 -158561531 + AT_rich Low_complexity Low_complexity 1 22 0 1899 100 7 62 chr3 68963473 68963762 -158560816 + AluSg SINE Alu 1 273 -37 907 147 0 22 chr3 68963784 68963968 -158560610 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 786 128 5 48 chr3 68964000 68964187 -158560391 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 30 77 0 0 chr3 68965746 68965811 -158558767 + AT_rich Low_complexity Low_complexity 1 65 0 5728 116 13 24 chr3 68965866 68966697 -158557881 + L1PA12 LINE L1 4796 5615 -553 2235 98 0 3 chr3 68966697 68966992 -158557586 + AluSc SINE Alu 1 294 -15 5728 116 13 24 chr3 68966992 68967541 -158557037 + L1PA12 LINE L1 5615 6168 0 22 70 0 0 chr3 68969661 68969704 -158554874 + AT_rich Low_complexity Low_complexity 1 43 0 678 152 0 0 chr3 68970317 68970422 -158554156 - AluSg/x SINE Alu -20 290 186 1594 103 5 0 chr3 68970422 68970635 -158553943 - AluSx SINE Alu -93 219 6 497 234 0 36 chr3 68970720 68970831 -158553747 - AluJo SINE Alu -84 228 122 301 179 0 0 chr3 68971241 68971297 -158553281 + MER41B LTR ERV1 1 56 -579 218 260 52 13 chr3 68972407 68972484 -158552094 + MIR SINE MIR 94 173 -89 346 182 46 0 chr3 68972781 68972873 -158551705 - L1ME3A LINE L1 -193 5969 5870 3653 169 55 29 chr3 68972908 68973673 -158550905 + LTR1 LTR ERV1 1 785 0 7896 175 63 17 chr3 68973673 68976510 -158548068 + HUERS-P2 LTR ERV1 1 3088 0 3393 164 64 39 chr3 68976510 68977276 -158547302 + LTR1 LTR ERV1 1 785 0 1832 131 69 7 chr3 68981763 68982053 -158542525 + AluSg SINE Alu 1 308 -2 22 0 0 0 chr3 68983155 68983177 -158541401 + AT_rich Low_complexity Low_complexity 1 22 0 291 291 107 0 chr3 68985414 68985517 -158539061 - MER58A DNA MER1_type 0 114 1 1867 170 10 0 chr3 68986136 68986436 -158538142 + AluSx SINE Alu 1 303 -9 27 29 0 0 chr3 68987091 68987125 -158537453 + AT_rich Low_complexity Low_complexity 1 34 0 2297 79 0 10 chr3 68988422 68988712 -158535866 + AluY SINE Alu 11 297 -14 2369 63 0 13 chr3 68990640 68990941 -158533637 + AluY SINE Alu 1 297 -14 929 194 21 16 chr3 68991681 68991872 -158532706 - AluSg/x SINE Alu -12 300 109 216 0 0 0 chr3 68996257 68996281 -158528297 + (A)n Simple_repeat Simple_repeat 1 24 0 227 224 30 0 chr3 68996580 68996647 -158527931 - MER20B DNA MER1_type -31 752 684 33 25 0 0 chr3 68996758 68996798 -158527780 + AT_rich Low_complexity Low_complexity 1 40 0 180 0 0 0 chr3 68997030 68997050 -158527528 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1403 193 32 25 chr3 68997053 68997338 -158527240 - AluJb SINE Alu -25 287 1 407 228 35 9 chr3 68997410 68997524 -158527054 - MER20B DNA MER1_type -628 155 39 331 226 151 0 chr3 68998296 68998389 -158526189 + AluJb SINE Alu 1 107 -195 900 234 22 54 chr3 68998403 68998632 -158525946 + L1MB4 LINE L1 5911 6132 -51 2025 92 6 54 chr3 68998632 68998779 -158525799 + AluSx SINE Alu 1 127 -185 2475 58 0 0 chr3 68998779 68999074 -158525504 + AluY SINE Alu 1 295 -16 2025 92 6 54 chr3 68999074 68999240 -158525338 + AluSx SINE Alu 127 299 -13 900 234 22 54 chr3 68999240 68999288 -158525290 + L1MB4 LINE L1 6132 6180 -3 27 62 0 0 chr3 68999319 68999367 -158525211 + AT_rich Low_complexity Low_complexity 1 48 0 1020 216 39 52 chr3 68999482 68999514 -158525064 - L1M4 LINE L1 -1069 5077 5046 1676 199 3 6 chr3 68999514 68999825 -158524753 - AluJb SINE Alu -2 310 1 1020 216 39 52 chr3 68999825 69000177 -158524401 - L1M4 LINE L1 -1100 5046 4698 1813 160 0 0 chr3 69000190 69000497 -158524081 - AluSx SINE Alu 0 329 23 835 180 13 1 chr3 69000576 69000759 -158523819 - MER61E LTR ERV1 -22 772 341 321 309 9 9 chr3 69000936 69001046 -158523532 - LTR25 LTR ERV1 -437 357 248 16100 233 68 48 chr3 69001181 69004421 -158520157 - LTR25-int LTR ERV1 0 8919 5354 1410 62 6 17 chr3 69004421 69004599 -158519979 - AluY SINE Alu -19 292 117 16100 233 68 48 chr3 69004599 69006734 -158517844 - LTR25-int LTR ERV1 -3565 5354 3264 1677 229 36 13 chr3 69006729 69007292 -158517286 - LTR25-int LTR ERV1 -5131 1865 1159 * 633 263 24 14 chr3 69007294 69007503 -158517075 - L1MCa LINE L1 -4954 1091 881 769 188 7 0 chr3 69007503 69007641 -158516937 - AluSg/x SINE Alu -10 300 162 268 257 14 0 chr3 69007648 69007718 -158516860 + MLT1D LTR MaLR 69 139 -366 1500 158 11 54 chr3 69007751 69008029 -158516549 - AluSx SINE Alu -17 295 30 574 221 48 0 chr3 69008047 69008192 -158516386 - L1MCa LINE L1 -5158 887 736 263 128 0 21 chr3 69008266 69008313 -158516265 + AluY SINE Alu 7 52 -248 910 190 0 23 chr3 69008384 69008558 -158516020 + AluJo SINE Alu 118 287 -25 858 301 53 38 chr3 69008561 69009135 -158515443 - L1MCa LINE L1 -5500 545 4 1922 52 52 4 chr3 69009238 69009486 -158515092 + AluY SINE Alu 36 295 -16 2139 97 7 7 chr3 69009924 69010233 -158514345 + L1PA7 LINE L1 5846 6154 0 1956 126 0 18 chr3 69010933 69011211 -158513367 + AluSx SINE Alu 1 273 -39 1149 246 42 17 chr3 69011307 69011596 -158512982 + AluJo SINE Alu 3 298 -4 612 212 6 12 chr3 69011603 69011773 -158512805 + GA-rich Low_complexity Low_complexity 4 172 0 4522 195 82 43 chr3 69012293 69012760 -158511818 + L1MB3 LINE L1 1184 1631 -4751 1465 215 0 0 chr3 69012760 69013021 -158511557 + AluJb SINE Alu 5 265 -47 4522 195 82 43 chr3 69013021 69014236 -158510342 + L1MB3 LINE L1 1631 2915 -3467 2532 260 25 28 chr3 69014223 69014897 -158509681 + L1MB3 LINE L1 3406 4079 -2303 * 2935 178 4 4 chr3 69014897 69015437 -158509141 + L1PA15 LINE L1 5625 6164 -1 2532 260 25 28 chr3 69015437 69015702 -158508876 + L1MB3 LINE L1 4079 4343 -2039 21 0 0 0 chr3 69015720 69015741 -158508837 + AT_rich Low_complexity Low_complexity 1 21 0 509 187 0 35 chr3 69015744 69016014 -158508564 + AluJb SINE Alu 5 312 0 606 214 66 25 chr3 69016015 69016258 -158508320 + L1MB3 LINE L1 4397 4649 -1733 2329 228 47 6 chr3 69016435 69017116 -158507462 + L1MB3 LINE L1 4647 5355 -1027 1761 179 3 0 chr3 69017117 69017402 -158507176 + AluJo SINE Alu 11 296 -16 2406 168 52 26 chr3 69017427 69018003 -158506575 + L1MB3 LINE L1 5565 6155 -264 579 164 151 13 chr3 69018041 69018118 -158506460 + MER7A DNA MER2_type 2 67 -2971 2044 151 3 0 chr3 69018118 69018417 -158506161 - AluSg SINE Alu -9 301 2 579 164 151 13 chr3 69018417 69018491 -158506087 + MER7A DNA MER2_type 67 172 -174 1691 194 78 39 chr3 69018513 69018581 -158505997 - MSTA LTR MaLR 0 428 364 198 0 0 0 chr3 69018581 69018603 -158505975 + (TG)n Simple_repeat Simple_repeat 1 22 0 1941 119 3 32 chr3 69018603 69018888 -158505690 - AluSg SINE Alu -33 277 1 1691 194 78 39 chr3 69018888 69019230 -158505348 - MSTA LTR MaLR -63 365 1 593 159 0 44 chr3 69019405 69019518 -158505060 + AluSc SINE Alu 184 291 -18 7333 54 8 12 chr3 69020053 69021523 -158503055 - SVA Other Other -875 1386 1 3187 181 27 34 chr3 69021559 69022291 -158502287 - L1MB3 LINE L1 -29 6154 5426 1848 155 33 13 chr3 69022291 69022457 -158502121 - AluSq SINE Alu -4 309 133 1846 145 35 7 chr3 69022457 69022746 -158501832 - AluSc SINE Alu -12 297 1 1848 155 33 13 chr3 69022746 69022882 -158501696 - AluSq SINE Alu -180 133 1 3187 181 27 34 chr3 69022882 69022923 -158501655 - L1MB3 LINE L1 -757 5426 5386 398 272 98 29 chr3 69023605 69023778 -158500800 + MER5A DNA MER1_type 4 188 -1 221 265 0 0 chr3 69024111 69024160 -158500418 + CT-rich Low_complexity Low_complexity 3 51 0 489 283 38 19 chr3 69024404 69024616 -158499962 - L1ME3A LINE L1 -30 6140 5925 479 186 101 62 chr3 69024620 69024749 -158499829 - FLAM_C SINE Alu 0 143 10 431 62 0 16 chr3 69024781 69024845 -158499733 + (TG)n Simple_repeat Simple_repeat 1 63 0 537 110 0 0 chr3 69024845 69024936 -158499642 + (GA)n Simple_repeat Simple_repeat 2 92 0 1351 179 162 14 chr3 69024936 69025066 -158499512 + MSTA LTR MaLR 10 119 -309 2272 123 0 0 chr3 69025066 69025376 -158499202 - AluSg SINE Alu 0 310 1 1351 179 162 14 chr3 69025376 69025609 -158498969 + MSTA LTR MaLR 119 427 -1 390 159 23 0 chr3 69026091 69026179 -158498399 - L1MB4 LINE L1 0 6180 6091 1965 146 0 10 chr3 69026269 69026588 -158497990 - AluSq SINE Alu 0 313 1 2006 136 7 13 chr3 69026870 69027172 -158497406 + AluSg SINE Alu 1 300 -10 443 319 7 0 chr3 69027333 69027471 -158497107 + MLT1D LTR MaLR 1 139 -366 1738 153 7 47 chr3 69027504 69027805 -158496773 - AluSg SINE Alu -21 289 1 864 227 67 77 chr3 69027904 69028279 -158496299 - MLT1A2 LTR MaLR 0 374 4 560 292 62 31 chr3 69028628 69028854 -158495724 + MIR SINE MIR 30 262 0 1368 241 65 0 chr3 69029296 69029587 -158494991 + AluJo SINE Alu 1 310 -2 659 90 10 0 chr3 69029606 69029706 -158494872 + (GGAA)n Simple_repeat Simple_repeat 4 104 0 2205 117 10 0 chr3 69029743 69030034 -158494544 - AluSg SINE Alu -16 294 1 576 238 98 19 chr3 69030143 69030357 -158494221 - MLT2B1 LTR ERVL 0 520 290 1092 197 9 9 chr3 69030390 69030608 -158493970 + AluSx SINE Alu 9 226 -86 226 214 0 0 chr3 69030611 69030653 -158493925 - Alu SINE Alu -62 237 196 226 167 74 0 chr3 69030651 69030705 -158493873 + Alu SINE Alu 240 297 -5 581 243 82 6 chr3 69030713 69030953 -158493625 - MLT2B1 LTR ERVL -164 250 1 261 194 101 58 chr3 69031181 69031320 -158493258 + MER4C LTR ERV1 11 155 -310 739 239 19 28 chr3 69031412 69031775 -158492803 + MER4C LTR ERV1 149 695 -4 213 231 325 0 chr3 69032630 69032747 -158491831 - MIR SINE MIR 0 262 108 24 0 0 0 chr3 69033368 69033392 -158491186 + AT_rich Low_complexity Low_complexity 1 24 0 1196 247 10 20 chr3 69033392 69033696 -158490882 - AluJb SINE Alu -6 306 6 663 235 14 75 chr3 69033730 69033943 -158490635 + MER4C-int LTR ERV1 218 417 -3774 2183 129 6 10 chr3 69033944 69034255 -158490323 + AluSg SINE Alu 1 310 0 681 259 121 19 chr3 69034377 69034707 -158489871 + MER21-int LTR ERV1 3493 6752 -1368 419 332 88 28 chr3 69034733 69034983 -158489595 + MER21-int LTR ERV1 889 1153 -3038 609 284 11 21 chr3 69035028 69035218 -158489360 + MER21-int LTR ERV1 1388 1575 -2616 1382 226 19 0 chr3 69035452 69035717 -158488861 - AluJb SINE Alu -38 274 5 1250 174 68 65 chr3 69036584 69036969 -158487609 + L1MA4 LINE L1 5911 6296 -4 1640 277 74 59 chr3 69037286 69038364 -158486214 + MER21-int LTR ERV1 2060 3180 -1011 294 212 152 0 chr3 69038443 69038509 -158486069 - MER82 DNA MER2_type -576 77 2 1974 152 0 0 chr3 69040600 69040890 -158483688 + AluSg SINE Alu 1 290 -20 375 279 95 78 chr3 69040924 69040987 -158483591 + MER5A DNA MER1_type 5 65 -124 2079 120 21 0 chr3 69040987 69041278 -158483300 + AluSc SINE Alu 1 297 -12 375 279 95 78 chr3 69041278 69041393 -158483185 + MER5A DNA MER1_type 65 186 -3 2001 132 34 0 chr3 69042207 69042502 -158482076 + AluSx SINE Alu 1 305 -7 282 279 59 69 chr3 69043308 69043512 -158481066 - MIR SINE MIR 0 262 61 704 239 5 54 chr3 69043627 69043811 -158480767 - FRAM SINE Alu -2 174 1 1637 120 124 12 chr3 69044100 69044359 -158480219 + AluSg SINE Alu 1 288 -22 212 217 0 22 chr3 69044661 69044707 -158479871 + L2 LINE L2 3261 3305 -8 2013 135 0 3 chr3 69044910 69045207 -158479371 + AluSc SINE Alu 1 296 -13 21 0 0 0 chr3 69045251 69045272 -158479306 + AT_rich Low_complexity Low_complexity 1 21 0 186 118 0 0 chr3 69045511 69045545 -158479033 + (TG)n Simple_repeat Simple_repeat 2 35 0 34012 97 13 20 chr3 69045948 69052131 -158472447 + L1PA6 LINE L1 15 6153 -1 23 92 0 0 chr3 69052724 69052789 -158471789 + AT_rich Low_complexity Low_complexity 1 65 0 24 0 0 0 chr3 69053338 69053362 -158471216 + AT_rich Low_complexity Low_complexity 1 24 0 1990 150 0 3 chr3 69053620 69053933 -158470645 + AluSx SINE Alu 1 312 0 499 328 23 0 chr3 69054716 69054887 -158469691 + MER46C DNA MER2_type 146 320 -18 21 0 0 0 chr3 69055028 69055049 -158469529 + AT_rich Low_complexity Low_complexity 1 21 0 30 45 0 0 chr3 69055481 69055525 -158469053 + AT_rich Low_complexity Low_complexity 1 44 0 23 54 0 0 chr3 69055958 69055995 -158468583 + AT_rich Low_complexity Low_complexity 1 37 0 344 331 23 15 chr3 69056023 69056156 -158468422 - MER5B DNA MER1_type -1 177 44 207 0 0 0 chr3 69056740 69056763 -158467815 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 982 201 32 115 chr3 69057748 69058062 -158466516 - AluJo SINE Alu -18 294 7 699 198 25 0 chr3 69058076 69058197 -158466381 - FLAM_C SINE Alu -9 124 1 957 202 30 25 chr3 69059952 69060155 -158464423 + MER2 DNA MER2_type 4 207 -138 317 279 71 32 chr3 69060432 69060586 -158463992 - MIR SINE MIR 0 262 103 2024 128 3 13 chr3 69060831 69061135 -158463443 + AluSg SINE Alu 1 301 -9 1257 171 38 79 chr3 69061752 69061849 -158462729 - AluJo SINE Alu -10 302 203 2826 179 33 19 chr3 69061849 69062369 -158462209 + MER1A DNA MER1_type 1 527 0 1257 171 38 79 chr3 69062369 69062586 -158461992 - AluJo SINE Alu -109 203 1 1893 139 0 34 chr3 69062607 69062901 -158461677 + AluSx SINE Alu 3 286 -26 322 303 31 62 chr3 69063001 69063163 -158461415 - MIR SINE MIR -2 260 104 816 213 0 25 chr3 69063477 69063660 -158460918 + FAM SINE Alu 1 43 0 1626 189 0 7 chr3 69063805 69064080 -158460498 - AluSx SINE Alu -39 273 1 1684 209 3 0 chr3 69064262 69064564 -158460014 + AluJb SINE Alu 1 303 -9 1374 228 101 48 chr3 69064770 69065205 -158459373 - MER44D DNA MER2_type -24 581 69 1017 123 7 0 chr3 69065215 69065353 -158459225 - AluSc SINE Alu -136 173 35 41 21 0 0 chr3 69066626 69066674 -158457904 + AT_rich Low_complexity Low_complexity 1 48 0 396 269 66 66 chr3 69066684 69066941 -158457637 - L1ME1 LINE L1 -18 6148 5892 311 244 318 40 chr3 69067096 69067272 -158457306 + L3 LINE CR1 904 1128 -449 2665 216 69 43 chr3 69067303 69067853 -158456725 - L1MB3 LINE L1 -10 6173 5593 1772 152 54 0 chr3 69067853 69068129 -158456449 - AluSx SINE Alu -21 291 1 2665 216 69 43 chr3 69068129 69068408 -158456170 - L1MB3 LINE L1 -590 5593 5323 606 158 199 18 chr3 69068408 69068579 -158455999 - MSTA LTR MaLR -2 426 225 2432 243 56 9 chr3 69068580 69069333 -158455245 - L1MB3 LINE L1 -1695 4451 3664 589 275 178 43 chr3 69069408 69070570 -158454008 - L1MC3 LINE L1 -743 5472 4599 228 275 66 73 chr3 69070746 69071033 -158453545 - L1ME2 LINE L1 -21 6143 5859 497 271 134 6 chr3 69071033 69071376 -158453202 - L1MC3 LINE L1 -2104 4111 3725 861 253 167 18 chr3 69071492 69071635 -158452943 - L1MC3 LINE L1 -5160 1236 1116 1836 151 10 10 chr3 69071635 69071933 -158452645 - AluSx SINE Alu -14 298 1 861 253 167 18 chr3 69071933 69072243 -158452335 - L1MC3 LINE L1 -5280 1116 715 936 309 115 21 chr3 69072262 69072834 -158451744 - L1MC3 LINE L1 -5732 664 39 1894 181 0 9 chr3 69072996 69073311 -158451267 - AluJb SINE Alu 0 312 1 2083 125 0 3 chr3 69073374 69073713 -158450865 + AluSq SINE Alu 1 338 0 761 274 222 14 chr3 69073713 69074132 -158450446 - L1MD3 LINE L1 -762 7233 6728 542 241 94 122 chr3 69074227 69074373 -158450205 - L1MC4a LINE L1 -1254 6554 6606 1729 137 7 35 chr3 69074373 69074689 -158449889 + AluSx SINE Alu 7 314 0 542 241 94 122 chr3 69074689 69075009 -158449569 - L1MC4a LINE L1 -1201 6607 6280 572 187 24 147 chr3 69075074 69075325 -158449253 - L1MD2 LINE L1 -24 6335 6116 230 231 31 0 chr3 69075326 69075391 -158449187 + (TA)n Simple_repeat Simple_repeat 2 68 0 371 248 115 0 chr3 69075790 69075947 -158448631 - L1M4 LINE L1 -1007 5139 4965 1211 113 21 5 chr3 69075947 69076141 -158448437 + MER107 DNA MER1_type 1 197 0 494 229 57 7 chr3 69076155 69076295 -158448283 + L1MB5 LINE L1 4037 4183 -1963 322 244 99 52 chr3 69076377 69076437 -158448141 + L1MB3 LINE L1 5996 6052 -131 1989 118 7 0 chr3 69076437 69076745 -158447833 + AluSx SINE Alu 1 310 0 322 244 99 52 chr3 69076745 69076855 -158447723 + L1MB3 LINE L1 6052 6175 -8 2983 227 39 39 chr3 69076889 69076939 -158447639 + L1MB5 LINE L1 5121 5169 -1005 2080 134 13 0 chr3 69076939 69077237 -158447341 + AluSx SINE Alu 3 304 -8 2983 227 39 39 chr3 69077237 69077630 -158446948 + L1MB5 LINE L1 5169 5560 -614 1594 151 0 110 chr3 69077630 69077975 -158446603 + AluSx SINE Alu 1 307 -5 2983 227 39 39 chr3 69077975 69078586 -158445992 + L1MB5 LINE L1 5560 6165 -9 1402 173 90 4 chr3 69079473 69079750 -158444828 - AluJb SINE Alu -11 301 1 267 175 95 0 chr3 69079782 69079845 -158444733 + L1MC5 LINE L1 6964 7032 -929 293 167 36 12 chr3 69079846 69079930 -158444648 + (TA)n Simple_repeat Simple_repeat 2 87 0 391 229 48 12 chr3 69080157 69080240 -158444338 - AluJb SINE Alu -128 174 89 2187 100 7 0 chr3 69080414 69080704 -158443874 - AluSp SINE Alu -21 292 1 21 36 0 0 chr3 69080885 69080913 -158443665 + AT_rich Low_complexity Low_complexity 1 28 0 254 364 59 8 chr3 69081696 69081814 -158442764 - L2 LINE L2 -13 3259 3136 2080 136 3 0 chr3 69082329 69082624 -158441954 - AluSx SINE Alu -16 296 1 1702 141 76 0 chr3 69083731 69083994 -158440584 + AluSx SINE Alu 7 289 -23 2100 123 3 3 chr3 69084076 69084385 -158440193 + AluSg SINE Alu 1 309 -1 2822 13 0 0 chr3 69085044 69085355 -158439223 - AluYa5 SINE Alu 0 311 1 2002 122 4 0 chr3 69085501 69085779 -158438799 + AluSq SINE Alu 16 294 -19 1669 123 41 95 chr3 69087495 69087812 -158436766 + AluSx SINE Alu 1 300 -12 530 261 25 19 chr3 69088153 69088314 -158436264 + MER20 DNA MER1_type 58 219 0 516 316 15 0 chr3 69089949 69090085 -158434493 + MER5A DNA MER1_type 1 138 -51 209 43 85 0 chr3 69090085 69090132 -158434446 + CT-rich Low_complexity Low_complexity 1 51 0 274 163 38 100 chr3 69090335 69090415 -158434163 - MER20 DNA MER1_type -78 141 67 491 304 55 61 chr3 69090417 69090719 -158433859 + L2 LINE L2 2763 3069 -244 440 330 25 11 chr3 69091464 69091677 -158432901 + L1M4c LINE L1 613 922 -5724 1178 238 105 79 chr3 69091759 69091940 -158432638 + L1M4c LINE L1 989 1164 -5482 2178 116 3 0 chr3 69091940 69092250 -158432328 + AluY SINE Alu 1 311 0 1178 238 105 79 chr3 69092250 69093110 -158431468 + L1M4c LINE L1 1164 2057 -4589 30 0 0 0 chr3 69093388 69093418 -158431160 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr3 69093437 69093467 -158431111 + AT_rich Low_complexity Low_complexity 1 30 0 375 288 63 16 chr3 69093540 69093731 -158430847 + L1M4c LINE L1 2561 2760 -3886 1783 231 59 29 chr3 69093753 69094229 -158430349 + L1MB4 LINE L1 21 510 -5874 2782 206 71 18 chr3 69094232 69094627 -158429951 + L1MB4 LINE L1 1108 1481 -4903 1855 111 4 4 chr3 69094627 69094888 -158429690 - AluSg SINE Alu -11 299 39 2782 206 71 18 chr3 69094888 69095444 -158429134 + L1MB4 LINE L1 1481 2205 -4179 2125 118 3 28 chr3 69096556 69096877 -158427701 + AluSp SINE Alu 1 313 0 3225 98 25 18 chr3 69098365 69098855 -158425723 - LTR15 LTR ERV1 0 493 1 1016 244 176 15 chr3 69099022 69099217 -158425361 - MER21B LTR ERV1 -487 376 214 4967 127 29 12 chr3 69099217 69099984 -158424594 - LTR17 LTR ERV1 0 780 1 1016 244 176 15 chr3 69099984 69100112 -158424466 - MER21B LTR ERV1 -649 214 1 3788 135 8 27 chr3 69100134 69100448 -158424130 + LTR9 LTR ERV1 1 299 -313 1877 128 35 3 chr3 69100448 69100738 -158423840 + AluSg SINE Alu 3 301 -9 3788 135 8 27 chr3 69100738 69101047 -158423531 + LTR9 LTR ERV1 299 612 0 247 206 137 0 chr3 69101047 69101120 -158423458 + L1MB4 LINE L1 3756 3838 -2544 770 167 346 4 chr3 69101145 69101414 -158423164 + MER46B DNA MER2_type 1 236 0 428 227 27 7 chr3 69101474 69101624 -158422954 + GA-rich Low_complexity Low_complexity 2 154 0 4796 128 26 18 chr3 69101658 69102431 -158422147 + MER4E LTR ERV1 1 779 0 655 256 35 41 chr3 69102433 69102571 -158422007 + L1MB4 LINE L1 3954 4091 -2291 3349 109 12 79 chr3 69102571 69103045 -158421533 + MER41A LTR ERV1 1 429 -125 1842 133 11 4 chr3 69103045 69103323 -158421255 - AluSx SINE Alu -32 280 1 3349 109 12 79 chr3 69103323 69103442 -158421136 + MER41A LTR ERV1 429 554 0 655 256 35 41 chr3 69103442 69103619 -158420959 + L1MB4 LINE L1 4091 4267 -2115 1807 160 160 74 chr3 69103650 69104112 -158420466 + MER41B LTR ERV1 118 619 -16 2348 226 98 57 chr3 69104156 69106181 -158418397 + L1MB4 LINE L1 4307 6416 0 1474 159 17 58 chr3 69107321 69107616 -158416962 - AluSx SINE Alu -28 284 2 864 232 53 50 chr3 69108408 69108727 -158415851 + L1ME2 LINE L1 5618 5937 -227 21 36 0 0 chr3 69109253 69109281 -158415297 + AT_rich Low_complexity Low_complexity 1 28 0 536 192 65 75 chr3 69109413 69109627 -158414951 + L1ME1 LINE L1 5637 5848 -318 2003 144 0 13 chr3 69109948 69110254 -158414324 - AluSx SINE Alu -10 302 1 274 339 94 41 chr3 69110517 69110584 -158413994 + MIR SINE MIR 3 65 -197 2245 107 3 0 chr3 69110584 69110892 -158413686 + AluSx SINE Alu 1 309 -3 274 339 94 41 chr3 69110892 69111069 -158413509 + MIR SINE MIR 65 260 -2 370 254 35 86 chr3 69111917 69112114 -158412464 - L1MC5 LINE L1 -26 7935 7749 25 31 0 0 chr3 69112707 69112739 -158411839 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 69113486 69113507 -158411071 + AT_rich Low_complexity Low_complexity 1 21 0 2922 244 34 8 chr3 69113738 69114599 -158409979 + L1MB2 LINE L1 5282 6164 -7 282 259 89 9 chr3 69114596 69114708 -158409870 + L1MC4 LINE L1 7461 7581 -461 * 724 204 84 22 chr3 69114717 69114943 -158409635 + L1MC4 LINE L1 7771 8010 -32 464 283 0 20 chr3 69115680 69115832 -158408746 + L1MC4a LINE L1 6440 6588 -1220 207 0 0 0 chr3 69115834 69115857 -158408721 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 11607 179 39 24 chr3 69115859 69117271 -158407307 + Tigger1 DNA MER2_type 9 1470 -948 1580 198 7 7 chr3 69117271 69117564 -158407014 + AluSx SINE Alu 1 293 -19 11607 179 39 24 chr3 69117564 69118526 -158406052 + Tigger1 DNA MER2_type 1470 2417 -1 348 242 86 111 chr3 69118722 69118920 -158405658 + HAL1 LINE L1 1292 1484 -1023 393 246 215 11 chr3 69119205 69119396 -158405182 + HAL1 LINE L1 1819 2048 -459 23 54 0 0 chr3 69121587 69121624 -158402954 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr3 69121669 69121692 -158402886 + AT_rich Low_complexity Low_complexity 1 23 0 2125 107 10 3 chr3 69123162 69123460 -158401118 + AluSq SINE Alu 1 300 -13 1205 183 80 31 chr3 69123470 69123759 -158400819 + AluJo SINE Alu 1 303 -9 21 71 0 0 chr3 69124186 69124228 -158400350 + AT_rich Low_complexity Low_complexity 1 42 0 2259 94 3 16 chr3 69125113 69125422 -158399156 - AluY SINE Alu -6 305 1 217 311 0 0 chr3 69126200 69126261 -158398317 - L2 LINE L2 -3 3310 3250 2356 101 0 0 chr3 69126812 69127120 -158397458 - AluSx SINE Alu -4 308 1 197 253 21 84 chr3 69127154 69127249 -158397329 - MIR3 SINE MIR -15 193 105 269 244 200 37 chr3 69127331 69127466 -158397112 + MIR SINE MIR 44 200 -62 677 194 23 8 chr3 69128248 69128377 -158396201 + AluJb SINE Alu 168 298 -14 21 0 0 0 chr3 69129095 69129116 -158395462 + AT_rich Low_complexity Low_complexity 1 21 0 2148 123 0 7 chr3 69129183 69129475 -158395103 - AluSc SINE Alu -19 290 1 1836 121 40 7 chr3 69129523 69129795 -158394783 + AluSc SINE Alu 1 281 -28 285 29 0 0 chr3 69129795 69129829 -158394749 + (CA)n Simple_repeat Simple_repeat 2 35 0 452 271 65 23 chr3 69130614 69130828 -158393750 - L1MC4 LINE L1 -5 8037 7815 745 160 28 113 chr3 69130830 69131000 -158393578 + Tigger2 DNA MER2_type 1 151 -2567 1908 153 14 0 chr3 69131000 69131295 -158393283 + AluSx SINE Alu 1 299 -13 745 160 28 113 chr3 69131295 69131337 -158393241 + Tigger2 DNA MER2_type 151 195 -2523 * 10680 165 70 19 chr3 69131335 69131452 -158393126 + Tigger2 DNA MER2_type 424 534 -2184 2021 127 0 27 chr3 69131452 69131751 -158392827 + AluSg SINE Alu 1 291 -19 10680 165 70 19 chr3 69131751 69131967 -158392611 + Tigger2 DNA MER2_type 534 737 -1981 342 45 0 0 chr3 69131967 69132011 -158392567 + (CA)n Simple_repeat Simple_repeat 2 45 0 10680 165 70 19 chr3 69132011 69132190 -158392388 + Tigger2 DNA MER2_type 737 905 -1813 2649 157 60 6 chr3 69132190 69132673 -158391905 + LTR22 LTR ERVK 1 509 0 10680 165 70 19 chr3 69132673 69133849 -158390729 + Tigger2 DNA MER2_type 905 2251 -467 1901 170 24 0 chr3 69133849 69134178 -158390400 - MER1B DNA MER1_type 0 337 1 10680 165 70 19 chr3 69134178 69134633 -158389945 + Tigger2 DNA MER2_type 2251 2681 -37 312 131 12 155 chr3 69134638 69134722 -158389856 + Tigger2 DNA MER2_type 2644 2715 -3 830 222 104 16 chr3 69134896 69135267 -158389311 - L1MC4a LINE L1 -363 7445 7135 570 220 74 19 chr3 69135342 69135498 -158389080 - L1MC4 LINE L1 -1033 7005 6777 1930 176 0 0 chr3 69135637 69135944 -158388634 + AluSx SINE Alu 4 310 -2 281 254 158 18 chr3 69136872 69136986 -158387592 - MIR SINE MIR -63 199 70 1582 191 10 13 chr3 69138348 69138646 -158385932 + AluJb SINE Alu 1 297 -15 2205 113 0 3 chr3 69139896 69140189 -158384389 - AluSq SINE Alu -17 296 5 29 70 0 0 chr3 69140307 69140364 -158384214 + AT_rich Low_complexity Low_complexity 1 57 0 2337 93 0 0 chr3 69141821 69142132 -158382446 + AluY SINE Alu 1 311 0 2100 270 171 40 chr3 69142940 69143958 -158380620 + L1MD1 LINE L1 33 1183 -5357 305 168 11 53 chr3 69143995 69144090 -158380488 + L1MD1 LINE L1 2419 2509 -4031 2072 122 6 13 chr3 69144142 69144453 -158380125 + AluSp SINE Alu 1 309 -4 827 245 106 22 chr3 69144454 69144993 -158379585 + L1MD1 LINE L1 2660 3243 -3297 1175 211 10 67 chr3 69145063 69145361 -158379217 + AluJb SINE Alu 1 281 -31 219 69 0 0 chr3 69145370 69145399 -158379179 + (CA)n Simple_repeat Simple_repeat 2 30 0 313 169 24 0 chr3 69145401 69145484 -158379094 + (TA)n Simple_repeat Simple_repeat 1 85 0 532 265 96 31 chr3 69145590 69146069 -158378509 + L1MD1 LINE L1 3426 3935 -2605 918 281 59 10 chr3 69146072 69146341 -158378237 + L1MD1 LINE L1 4000 4297 -2243 1121 202 87 32 chr3 69146341 69146618 -158377960 + AluJb SINE Alu 1 292 -10 918 281 59 10 chr3 69146618 69146757 -158377821 + L1MD1 LINE L1 4297 4428 -2112 479 266 0 0 chr3 69146794 69146903 -158377675 - FRAM SINE Alu -70 106 1 1309 261 91 54 chr3 69146908 69148297 -158376281 + L1MD1 LINE L1 4431 5870 -766 2140 104 0 35 chr3 69148297 69148615 -158375963 + AluY SINE Alu 5 311 0 1309 261 91 54 chr3 69148615 69148753 -158375825 + L1MD1 LINE L1 5870 6001 -635 2497 241 81 51 chr3 69148835 69150016 -158374562 + L1M4 LINE L1 3764 4980 -1166 1193 226 96 32 chr3 69150017 69150373 -158374205 + LTR12-int LTR ERV1 1223 1749 -5247 328 164 0 0 chr3 69150404 69150459 -158374119 + LTR12-int LTR ERV1 2167 2221 -4870 6703 203 53 28 chr3 69150460 69151427 -158373151 + LTR12-int LTR ERV1 1029 1970 -5026 1873 147 19 13 chr3 69151427 69151734 -158372844 - AluSx SINE Alu -3 309 1 6703 203 53 28 chr3 69151734 69152569 -158372009 + LTR12-int LTR ERV1 1970 4123 -2873 * 7526 186 51 36 chr3 69152542 69152570 -158372008 + LTR12-int LTR ERV1 2537 2563 -4433 2388 90 0 0 chr3 69152570 69152870 -158371708 + AluY SINE Alu 1 300 -11 7526 186 51 36 chr3 69152870 69155100 -158369478 + LTR12-int LTR ERV1 2563 6994 -2 257 135 0 0 chr3 69155169 69155206 -158369372 + LTR25 LTR ERV1 288 324 -470 941 173 29 3 chr3 69155401 69155615 -158368963 + LTR25 LTR ERV1 341 794 0 1474 220 70 58 chr3 69155806 69155932 -158368646 + L1MD1 LINE L1 6072 6195 -441 871 201 40 92 chr3 69155932 69156040 -158368538 + MER46A DNA MER2_type 1 113 -2618 2032 98 0 59 chr3 69156040 69156345 -158368233 + AluY SINE Alu 1 287 -24 871 201 40 92 chr3 69156345 69156485 -158368093 + MER46A DNA MER2_type 113 236 0 1474 220 70 58 chr3 69156485 69156912 -158367666 + L1MD1 LINE L1 6195 6632 -4 1473 117 212 185 chr3 69156988 69157459 -158367119 + LTR12 LTR ERV1 1 484 -230 301 241 47 77 chr3 69157680 69157850 -158366728 + L1MC5 LINE L1 7468 7632 -329 1612 164 53 4 chr3 69158388 69158669 -158365909 - AluSx SINE Alu -15 297 3 469 324 50 28 chr3 69159116 69159437 -158365141 - L1ME3A LINE L1 -312 5858 5531 24 67 0 0 chr3 69160112 69160157 -158364421 + AT_rich Low_complexity Low_complexity 1 45 0 1913 136 4 0 chr3 69160763 69161077 -158363501 + AluY SINE Alu 1 315 0 248 175 223 39 chr3 69161817 69161920 -158362658 - MER5C DNA MER1_type 0 324 203 1843 144 4 0 chr3 69162356 69162627 -158361951 + AluSg1 SINE Alu 26 297 -12 26 50 0 0 chr3 69164083 69164123 -158360455 + AT_rich Low_complexity Low_complexity 1 40 0 2265 122 0 0 chr3 69164512 69164815 -158359763 - AluSx SINE Alu -9 303 1 286 318 40 8 chr3 69165124 69165250 -158359328 + L1M4 LINE L1 103 232 -6310 244 372 0 18 chr3 69165660 69165773 -158358805 + L1M4 LINE L1 1348 1458 -5117 1907 135 18 0 chr3 69165790 69166072 -158358506 + AluSq SINE Alu 1 287 -26 1170 140 0 6 chr3 69166089 69166268 -158358310 + AluSg/x SINE Alu 120 297 -15 247 211 56 106 chr3 69166330 69166390 -158358188 + L1M4c LINE L1 869 930 -5454 1902 113 3 28 chr3 69166390 69166696 -158357882 + AluSx SINE Alu 7 305 0 247 211 56 106 chr3 69166696 69166814 -158357764 + L1M4c LINE L1 930 1039 -5345 899 111 21 35 chr3 69166816 69166960 -158357618 + AluSp SINE Alu 1 142 -171 1829 162 0 10 chr3 69166961 69167258 -158357320 + AluSc SINE Alu 1 294 -15 1088 271 171 29 chr3 69167258 69167678 -158356900 + L1M4c LINE L1 1039 1398 -4986 197 65 32 0 chr3 69167678 69167709 -158356869 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1088 271 171 29 chr3 69167709 69168042 -158356536 + L1M4c LINE L1 1398 1899 -4485 286 263 51 8 chr3 69168071 69168189 -158356389 + L1M4c LINE L1 2038 2160 -4224 310 213 27 0 chr3 69168203 69168278 -158356300 + Tigger1 DNA MER2_type 1 77 -2341 917 191 44 15 chr3 69168287 69168491 -158356087 + Tigger1 DNA MER2_type 2207 2416 -2 854 254 54 42 chr3 69168494 69168859 -158355719 + L1M4c LINE L1 2173 2564 -3818 1711 133 7 30 chr3 69168859 69169130 -158355448 + AluSx SINE Alu 40 304 -8 854 254 54 42 chr3 69169130 69169402 -158355176 + L1M4c LINE L1 2564 2831 -3551 1431 170 43 0 chr3 69169402 69169655 -158354923 + AluSq SINE Alu 44 307 -6 3454 249 48 39 chr3 69169674 69169900 -158354678 + L1M4c LINE L1 2862 3085 -3297 1859 127 0 4 chr3 69169900 69170167 -158354411 + AluSx SINE Alu 39 304 -8 3454 249 48 39 chr3 69170167 69170403 -158354175 + L1M4c LINE L1 3085 3318 -3064 1785 139 48 3 chr3 69170403 69170698 -158353880 + AluSx SINE Alu 1 308 -4 3454 249 48 39 chr3 69170698 69171810 -158352768 + L1M4c LINE L1 3318 4450 -1932 198 0 0 0 chr3 69171868 69171890 -158352688 + (TG)n Simple_repeat Simple_repeat 1 22 0 258 284 49 0 chr3 69172476 69172557 -158352021 + MER82 DNA MER2_type 14 98 -555 515 204 106 0 chr3 69172597 69172710 -158351868 - MER82 DNA MER2_type -385 268 144 23 0 0 0 chr3 69172763 69172786 -158351792 + AT_rich Low_complexity Low_complexity 1 23 0 269 203 34 0 chr3 69174084 69174143 -158350435 + HsTC2 DNA Tc2 1833 1893 -5 1658 179 4 14 chr3 69175029 69175308 -158349270 - AluSx SINE Alu -36 276 1 182 345 84 17 chr3 69175474 69175593 -158348985 + L2 LINE L2 3187 3313 0 2210 72 7 0 chr3 69175918 69176262 -158348316 + AluY SINE Alu 3 348 0 1077 157 6 0 chr3 69176573 69176745 -158347833 + AluSg/x SINE Alu 137 309 -3 264 139 0 0 chr3 69176959 69177002 -158347576 - tRNA-Cys-TGC tRNA tRNA -32 43 1 27 0 0 0 chr3 69177046 69177073 -158347505 + AT_rich Low_complexity Low_complexity 1 27 0 268 214 0 22 chr3 69177182 69177271 -158347307 + (TATG)n Simple_repeat Simple_repeat 3 89 0 2080 93 0 24 chr3 69179199 69179488 -158345090 - AluSx SINE Alu -30 282 1 2172 123 0 0 chr3 69179518 69179820 -158344758 + AluY SINE Alu 1 302 -9 533 223 41 44 chr3 69180642 69180815 -158343763 + L1ME1 LINE L1 5736 5886 -280 706 207 0 21 chr3 69180819 69180959 -158343619 + FLAM_C SINE Alu 6 142 -1 302 291 152 13 chr3 69180959 69181117 -158343461 + L1ME1 LINE L1 5938 6117 -49 761 257 167 9 chr3 69181940 69182162 -158342416 + MLT1F1 LTR MaLR 127 383 -184 490 77 0 13 chr3 69182159 69182237 -158342341 - Tigger7 DNA MER2_type -98 2389 2313 * 1543 171 38 38 chr3 69182232 69182525 -158342053 - MER1B DNA MER1_type -46 293 1 910 236 88 41 chr3 69182532 69182696 -158341882 + L1 LINE L1 2662 2817 -3329 2247 86 0 16 chr3 69182696 69182999 -158341579 + AluY SINE Alu 1 298 -13 910 236 88 41 chr3 69182999 69183253 -158341325 + L1 LINE L1 2817 3100 -3046 1222 184 157 0 chr3 69183257 69183550 -158341028 + MER7A DNA MER2_type 5 341 -5 504 319 34 12 chr3 69183556 69183882 -158340696 + L1 LINE L1 3132 3464 -2682 4503 221 167 39 chr3 69183884 69183992 -158340586 + L1MCa LINE L1 234 327 -6099 1976 132 14 0 chr3 69183992 69184281 -158340297 + AluSg1 SINE Alu 1 293 -16 4503 221 167 39 chr3 69184281 69184850 -158339728 + L1MCa LINE L1 327 822 -5604 1473 190 0 43 chr3 69184850 69185155 -158339423 + AluJb SINE Alu 1 292 -20 4503 221 167 39 chr3 69185155 69185420 -158339158 + L1MCa LINE L1 822 1052 -5374 2243 95 24 0 chr3 69185420 69185715 -158338863 + AluSg SINE Alu 1 302 -8 4503 221 167 39 chr3 69185715 69186269 -158338309 + L1MCa LINE L1 1052 1533 -4893 1264 220 23 40 chr3 69186269 69186573 -158338005 + AluJo SINE Alu 2 300 -2 4503 221 167 39 chr3 69186573 69187678 -158336900 + L1MCa LINE L1 1533 2495 -3931 1959 133 14 3 chr3 69187678 69187971 -158336607 + AluSg SINE Alu 1 296 -14 4503 221 167 39 chr3 69187971 69188353 -158336225 + L1MCa LINE L1 2495 3603 -2823 1838 188 9 18 chr3 69188361 69188702 -158335876 + MER1B DNA MER1_type 2 339 0 445 291 119 19 chr3 69188750 69189069 -158335509 + L1MCa LINE L1 3680 4030 -2396 225 328 115 8 chr3 69189382 69189504 -158335074 - MIR SINE MIR -113 149 15 1719 187 27 0 chr3 69189634 69189933 -158334645 - AluJb SINE Alu -5 307 1 1725 158 24 20 chr3 69190378 69190676 -158333902 + AluSq SINE Alu 3 301 -12 22 56 0 0 chr3 69191068 69191104 -158333474 + AT_rich Low_complexity Low_complexity 1 36 0 413 333 60 18 chr3 69191369 69191537 -158333041 + MER5B DNA MER1_type 1 175 -3 2306 112 0 0 chr3 69191566 69191870 -158332708 + AluY SINE Alu 1 304 -7 197 253 71 91 chr3 69192094 69192187 -158332391 - MIR SINE MIR -72 190 99 2135 99 7 0 chr3 69192187 69192493 -158332085 + AluSp SINE Alu 1 308 0 197 253 71 91 chr3 69192493 69192552 -158332026 - MIR SINE MIR -163 99 40 2883 245 80 40 chr3 69193489 69195404 -158329174 + L1M4c LINE L1 2188 4177 -2205 234 35 0 0 chr3 69195447 69195476 -158329102 - AluY SINE Alu -207 94 66 5868 94 3 43 chr3 69195476 69196336 -158328242 + LTR12 LTR ERV1 1 826 0 1365 130 10 10 chr3 69196338 69196538 -158328040 + AluY SINE Alu 92 291 -20 842 241 53 8 chr3 69196567 69196947 -158327631 + L1M4c LINE L1 4261 4833 -1549 453 305 23 0 chr3 69197138 69197266 -158327312 + MLT1F1 LTR MaLR 241 371 -196 288 247 62 0 chr3 69197284 69197365 -158327213 + MLT1F1 LTR MaLR 477 562 -5 745 242 187 64 chr3 69198383 69198945 -158325633 + LTR27 LTR ERV1 3 633 -3 490 255 128 34 chr3 69198949 69199184 -158325394 + LTR27-int LTR ERV1 2 258 -6833 * 2590 213 104 47 chr3 69199171 69200360 -158324218 + LTR27-int LTR ERV1 406 1525 -3692 1822 145 7 11 chr3 69200360 69200676 -158323902 + AluSg SINE Alu 1 315 0 2590 213 104 47 chr3 69200676 69200693 -158323885 + LTR27-int LTR ERV1 1525 4799 -418 3001 163 32 102 chr3 69200781 69201573 -158323005 + MER41-int LTR ERV1 609 1454 -5579 455 129 0 14 chr3 69201573 69201643 -158322935 - AluS SINE Alu -247 71 3 3001 163 32 102 chr3 69201643 69201930 -158322648 + MER41-int LTR ERV1 1454 2900 -4133 5255 185 83 22 chr3 69201930 69202490 -158322088 + MER41-int LTR ERV1 2615 3139 -2807 1707 139 42 3 chr3 69202490 69202778 -158321800 + AluSq SINE Alu 1 299 -14 5255 185 83 22 chr3 69202778 69203540 -158321038 + MER41-int LTR ERV1 3139 4018 -1928 530 256 15 41 chr3 69403568 69403763 -158120815 + MIR SINE MIR 73 262 0 26 30 0 0 chr3 69403776 69403809 -158120769 + AT_rich Low_complexity Low_complexity 1 33 0 186 170 191 21 chr3 69403809 69403856 -158120722 - MIR SINE MIR -98 164 110 464 243 171 7 chr3 69404273 69404413 -158120165 + MIR SINE MIR 30 192 -70 195 42 0 0 chr3 69404675 69404699 -158119879 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 317 290 55 41 chr3 69405405 69405550 -158119028 - MIR3 SINE MIR -35 173 27 602 255 22 114 chr3 69406272 69406543 -158118035 - MIR SINE MIR -2 260 15 24 0 0 0 chr3 69406732 69406756 -158117822 + AT_rich Low_complexity Low_complexity 1 24 0 983 200 5 0 chr3 69409411 69409601 -158114977 + MLT1A1 LTR MaLR 171 361 -4 22 0 0 0 chr3 69410578 69410600 -158113978 + AT_rich Low_complexity Low_complexity 1 22 0 234 195 0 0 chr3 69411233 69411274 -158113304 + U2 snRNA snRNA 1 41 -147 1638 186 38 0 chr3 69411669 69411960 -158112618 - AluJb SINE Alu -9 303 2 1400 186 48 33 chr3 69412043 69412377 -158112201 + MER44D DNA MER2_type 1 609 0 935 309 19 24 chr3 69412927 69413306 -158111272 - LTR16C LTR ERVL 0 491 115 250 333 48 0 chr3 69413424 69413508 -158111070 - L2 LINE L2 -1 3271 3184 330 324 0 7 chr3 69414469 69414614 -158109964 - MER117 DNA MER1_type -47 150 7 240 306 14 0 chr3 69414671 69414743 -158109835 + GA-rich Low_complexity Low_complexity 4 76 0 777 154 17 17 chr3 69415229 69415586 -158108992 + (TA)n Simple_repeat Simple_repeat 1 357 0 54 0 0 0 chr3 69415599 69415653 -158108925 + AT_rich Low_complexity Low_complexity 1 54 0 293 161 47 0 chr3 69415653 69415802 -158108776 + (TA)n Simple_repeat Simple_repeat 2 157 0 180 77 0 0 chr3 69415822 69415848 -158108730 + (TTTA)n Simple_repeat Simple_repeat 1 26 0 318 106 0 0 chr3 69417104 69417151 -158107427 + (TTCA)n Simple_repeat Simple_repeat 1 47 0 361 390 99 24 chr3 69417154 69417487 -158107091 - L2 LINE L2 0 3272 2915 197 158 0 26 chr3 69417837 69417875 -158106703 - MIR SINE MIR -60 148 112 22 0 0 0 chr3 69418729 69418751 -158105827 + AT_rich Low_complexity Low_complexity 1 22 0 234 339 31 62 chr3 69419700 69419830 -158104748 + L2 LINE L2 3145 3270 -2 573 177 152 30 chr3 69420468 69420632 -158103946 + MLT1K LTR MaLR 395 578 -10 330 297 9 9 chr3 69422369 69422480 -158102098 + MIR SINE MIR 36 146 -62 840 259 17 17 chr3 69422554 69422786 -158101792 - MIR SINE MIR 0 262 31 284 296 37 19 chr3 69424745 69424853 -158099725 - MIR SINE MIR -30 232 123 220 233 0 0 chr3 69425675 69425718 -158098860 - L2 LINE L2 -9 3304 3262 298 361 101 34 chr3 69425740 69426036 -158098542 + L3 LINE CR1 1062 1377 -200 1894 115 0 11 chr3 69428277 69428538 -158096040 - AluSx SINE Alu -54 258 1 362 311 34 14 chr3 69428556 69428704 -158095874 - MLT1L LTR MaLR -96 519 369 1089 204 9 43 chr3 69428914 69429144 -158095434 + MER58A DNA MER1_type 3 224 0 439 275 157 71 chr3 69429460 69429911 -158094667 + L2 LINE L2 2815 3304 -9 257 333 50 10 chr3 69429993 69430092 -158094486 + L2 LINE L2 3208 3310 -3 238 350 125 12 chr3 69430173 69430333 -158094245 + L3 LINE CR1 1389 1566 -11 239 48 0 48 chr3 69430912 69430954 -158093624 + (TTTG)n Simple_repeat Simple_repeat 3 42 0 22 0 0 0 chr3 69431493 69431515 -158093063 + AT_rich Low_complexity Low_complexity 1 22 0 187 304 87 22 chr3 69431547 69431639 -158092939 + MER5A DNA MER1_type 36 133 -56 1842 158 0 0 chr3 69432124 69432396 -158092182 + AluSx SINE Alu 33 304 -8 22 35 0 0 chr3 69432477 69432506 -158092072 + AT_rich Low_complexity Low_complexity 1 29 0 355 331 121 12 chr3 69433294 69433460 -158091118 + MIR SINE MIR 5 188 -74 951 233 19 42 chr3 69433476 69433738 -158090840 - MIR SINE MIR -2 260 5 292 292 31 10 chr3 69434598 69434694 -158089884 - MER5A DNA MER1_type -11 178 81 * 306 308 45 15 chr3 69434610 69434743 -158089835 + MER5A DNA MER1_type 35 171 -18 346 271 76 31 chr3 69435039 69435176 -158089402 - MIR SINE MIR -37 171 26 246 361 57 16 chr3 69435295 69435417 -158089161 - MIR SINE MIR -128 134 8 1305 232 102 18 chr3 69436168 69436654 -158087924 - MER39 LTR ERV1 -5 702 10 332 335 6 61 chr3 69437558 69437722 -158086856 - MER5A DNA MER1_type -31 158 4 627 14 0 0 chr3 69437797 69437869 -158086709 + (TG)n Simple_repeat Simple_repeat 1 72 0 1042 153 39 0 chr3 69438277 69438480 -158086098 - L1MB7 LINE L1 -23 6161 5951 231 207 24 12 chr3 69438494 69438576 -158086002 - MER20B DNA MER1_type -39 744 662 284 305 17 0 chr3 69438629 69438747 -158085831 - L1MB7 LINE L1 -260 5861 5742 488 203 37 91 chr3 69440795 69440896 -158083682 - MER112 DNA MER1_type -1 259 171 2034 170 0 0 chr3 69440896 69441207 -158083371 - AluJb SINE Alu 0 312 2 488 203 37 91 chr3 69441207 69441292 -158083286 - MER112 DNA MER1_type -89 171 83 230 306 0 14 chr3 69442093 69442165 -158082413 - L3 LINE CR1 -91 1486 1416 22 0 0 0 chr3 69443216 69443238 -158081340 + AT_rich Low_complexity Low_complexity 1 22 0 210 278 19 0 chr3 69443632 69443686 -158080892 + (CATATA)n Simple_repeat Simple_repeat 5 59 0 189 405 0 14 chr3 69445015 69445089 -158079489 - L2 LINE L2 -214 3058 2986 315 281 23 138 chr3 69445147 69445364 -158079214 - L2 LINE L2 -42 3230 3039 326 314 47 78 chr3 69445471 69445726 -158078852 - MIR SINE MIR -15 247 1 302 251 12 19 chr3 69446509 69446622 -158077956 + MLT1G1 LTR MaLR 14 127 -422 2279 175 33 12 chr3 69446622 69447045 -158077533 - MSTB1 LTR MaLR 0 432 1 283 253 95 44 chr3 69447045 69447203 -158077375 + MLT1G1 LTR MaLR 171 336 -259 286 138 0 0 chr3 69447268 69447329 -158077249 - MLT1H1 LTR MaLR 0 567 495 2144 101 0 7 chr3 69447335 69447642 -158076936 + AluSq SINE Alu 1 305 0 353 254 59 8 chr3 69447844 69447962 -158076616 - MLT1H LTR MaLR -385 164 41 2217 123 3 0 chr3 69448055 69448357 -158076221 - AluSp SINE Alu -10 303 1 434 286 52 19 chr3 69448362 69448516 -158076062 - MIR3 SINE MIR -34 174 16 316 313 89 0 chr3 69448521 69448700 -158075878 - MER117 DNA MER1_type -2 195 1 330 225 50 67 chr3 69450262 69450382 -158074196 - MIR SINE MIR -85 177 60 401 284 14 7 chr3 69450545 69450686 -158073892 + MER103 DNA DNA 9 150 -16 550 267 71 24 chr3 69450941 69451196 -158073382 + MLT1I LTR MaLR 1 267 -142 377 333 33 16 chr3 69451256 69451439 -158073139 + MER117 DNA MER1_type 11 196 -1 210 304 29 29 chr3 69452402 69452471 -158072107 + L2 LINE L2 3204 3272 0 323 306 52 60 chr3 69453137 69453271 -158071307 - L2 LINE L2 -4 3268 3136 351 278 170 24 chr3 69453570 69453782 -158070796 - L2 LINE L2 -692 2622 2380 184 224 60 0 chr3 69454820 69454887 -158069691 + MIR SINE MIR 106 176 -86 2004 136 0 0 chr3 69455456 69455728 -158068850 + AluSx SINE Alu 1 272 -40 417 20 0 0 chr3 69455739 69455789 -158068789 + (CA)n Simple_repeat Simple_repeat 1 50 0 526 184 157 14 chr3 69456473 69456620 -158067958 + MER3 DNA MER1_type 1 168 -41 284 319 29 29 chr3 69456813 69456873 -158067705 - Charlie8 DNA MER1_type -2279 138 79 4483 199 27 34 chr3 69456873 69457963 -158066615 + Tigger6a DNA MER2_type 2 1083 0 284 319 29 29 chr3 69457963 69458040 -158066538 - Charlie8 DNA MER1_type -2337 80 1 2179 145 64 7 chr3 69458261 69458519 -158066059 - MER65A LTR ERV1 0 445 152 498 17 0 0 chr3 69458519 69458578 -158066000 + (TG)n Simple_repeat Simple_repeat 2 60 0 2179 145 64 7 chr3 69458578 69458740 -158065838 - MER65A LTR ERV1 -293 152 1 242 288 159 53 chr3 69459107 69459371 -158065207 + L2 LINE L2 3022 3313 0 220 160 20 20 chr3 69459371 69459421 -158065157 + (TGGA)n Simple_repeat Simple_repeat 2 51 0 28 0 0 0 chr3 69459484 69459512 -158065066 + AT_rich Low_complexity Low_complexity 1 28 0 532 312 92 11 chr3 69459692 69459974 -158064604 + L3 LINE CR1 853 1157 -420 355 276 103 26 chr3 69460105 69460221 -158064357 + MIR SINE MIR 21 145 -117 838 254 22 76 chr3 69460415 69460876 -158063702 + Charlie4a DNA MER1_type 1 436 -72 1369 209 31 0 chr3 69460877 69461131 -158063447 + AluJo SINE Alu 51 312 0 236 256 26 0 chr3 69461131 69461209 -158063369 + Charlie4a DNA MER1_type 429 508 0 391 204 293 7 chr3 69461398 69461545 -158063033 + MER3 DNA MER1_type 5 193 -16 406 256 146 23 chr3 69461558 69461866 -158062712 + L1MC5 LINE L1 7333 7678 -283 2268 104 13 0 chr3 69461866 69462175 -158062403 + AluSp SINE Alu 1 313 0 327 158 44 61 chr3 69462317 69462431 -158062147 + L1MC4 LINE L1 7926 8037 -5 228 261 138 0 chr3 69462436 69462501 -158062077 + MIR SINE MIR 184 257 -5 279 341 0 0 chr3 69462523 69462605 -158061973 + L3 LINE CR1 1293 1374 -203 427 291 0 0 chr3 69462693 69462796 -158061782 - MIR SINE MIR -17 245 143 282 287 125 15 chr3 69462774 69462910 -158061668 + L3 LINE CR1 1426 1576 -1 * 1872 94 71 4 chr3 69463915 69464170 -158060408 - AluSq SINE Alu -41 272 1 817 287 97 13 chr3 69464496 69464869 -158059709 - MLT1I LTR MaLR -2 407 4 207 0 0 0 chr3 69465416 69465439 -158059139 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2272 88 24 0 chr3 69466037 69466331 -158058247 - AluSx SINE Alu -11 301 1 2117 126 3 3 chr3 69466370 69466664 -158057914 - AluSx SINE Alu -18 294 1 423 293 47 61 chr3 69467519 69467950 -158056628 - MLT1F LTR MaLR -1 554 120 303 345 9 17 chr3 69468424 69468540 -158056038 + MIR SINE MIR 29 143 -119 239 296 37 0 chr3 69468593 69468674 -158055904 - L2 LINE L2 -1 3312 3229 2375 100 0 3 chr3 69468786 69469096 -158055482 - AluSc SINE Alu 0 309 1 1558 169 12 99 chr3 69470991 69471416 -158053162 - MLT1B LTR MaLR -2 388 1 264 295 63 0 chr3 69471592 69471687 -158052891 - L2 LINE L2 -20 3293 3193 294 341 154 24 chr3 69472035 69472243 -158052335 - MIR SINE MIR -27 235 1 258 32 0 0 chr3 69472316 69472347 -158052231 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 778 131 8 0 chr3 69473725 69473855 -158050723 + L1MB2 LINE L1 6002 6132 -39 2047 96 114 24 chr3 69473889 69474223 -158050355 - THE1B LTR MaLR 0 364 1 236 245 0 0 chr3 69474282 69474331 -158050247 + CT-rich Low_complexity Low_complexity 1 49 0 217 323 268 4 chr3 69474352 69474606 -158049972 - L2 LINE L2 -750 2564 2244 321 316 146 12 chr3 69476356 69476527 -158048051 - MIR SINE MIR -65 197 4 1615 189 58 21 chr3 69476559 69476824 -158047754 - MLT1B LTR MaLR 0 390 105 2082 146 0 0 chr3 69476824 69477132 -158047446 - AluY SINE Alu -3 308 1 1615 189 58 21 chr3 69477132 69477242 -158047336 - MLT1B LTR MaLR -285 105 1 541 214 26 0 chr3 69477942 69478059 -158046519 + Charlie5 DNA MER1_type 5 124 -2488 934 188 74 80 chr3 69478066 69478443 -158046135 + Charlie5 DNA MER1_type 2245 2619 0 257 323 54 116 chr3 69479572 69479866 -158044712 - L2 LINE L2 0 3272 2997 344 259 68 23 chr3 69479866 69480084 -158044494 + MER57A LTR ERV1 1 203 -200 504 231 15 30 chr3 69480085 69480219 -158044359 + MER66B LTR ERV1 1 132 -354 4693 165 3 33 chr3 69480219 69481079 -158043499 + MER66-int LTR ERV1 5286 6120 -556 336 200 50 0 chr3 69481083 69481163 -158043415 + MER57A LTR ERV1 320 403 0 212 250 29 15 chr3 69481306 69481374 -158043204 + L2 LINE L2 2692 2760 -554 244 96 41 27 chr3 69481403 69481476 -158043102 + (TA)n Simple_repeat Simple_repeat 2 75 0 375 160 0 43 chr3 69481483 69481577 -158043001 - MER53 DNA DNA -58 131 42 601 353 64 42 chr3 69481733 69482090 -158042488 + L2 LINE L2 2907 3271 -1 189 0 0 0 chr3 69483038 69483059 -158041519 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 409 318 24 33 chr3 69484256 69484467 -158040111 - MIR SINE MIR -6 256 48 362 288 75 71 chr3 69485799 69486011 -158038567 - MIR SINE MIR -19 243 31 1752 141 32 84 chr3 69486080 69486220 -158038358 + L1MB4 LINE L1 5763 5909 -271 1887 166 113 51 chr3 69486220 69486654 -158037924 + LOR1b LTR ERV1 1 461 0 1752 141 32 84 chr3 69486654 69486790 -158037788 + L1MB4 LINE L1 5909 6010 -170 2216 68 48 17 chr3 69486790 69487082 -158037496 - AluSc SINE Alu -2 307 7 1752 141 32 84 chr3 69487082 69487245 -158037333 + L1MB4 LINE L1 6010 6180 0 3024 178 66 12 chr3 69487681 69488362 -158036216 + MER50 LTR ERV1 1 718 -16 182 103 0 26 chr3 69488638 69488677 -158035901 + (TTTTG)n Simple_repeat Simple_repeat 1 38 0 320 355 143 10 chr3 69491046 69491249 -158033329 - MIR SINE MIR -13 249 20 487 277 51 43 chr3 69492324 69492580 -158031998 + L1MC4a LINE L1 5575 5832 -1976 23 68 0 0 chr3 69492853 69492897 -158031681 + AT_rich Low_complexity Low_complexity 1 44 0 369 304 49 62 chr3 69493478 69493702 -158030876 - MIR SINE MIR -34 228 8 487 269 53 62 chr3 69493919 69494127 -158030451 + MIR SINE MIR 12 217 -45 243 178 37 84 chr3 69494642 69494749 -158029829 + MLT1J LTR MaLR 399 500 -11 24 0 0 0 chr3 69494866 69494890 -158029688 + AT_rich Low_complexity Low_complexity 1 24 0 2442 60 40 0 chr3 69495298 69495596 -158028982 - AluY SINE Alu 0 311 2 261 0 0 0 chr3 69495976 69496005 -158028573 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 2053 125 4 0 chr3 69496603 69496912 -158027666 + AluSx SINE Alu 1 310 0 240 250 105 0 chr3 69497115 69497191 -158027387 - MER91C DNA MER1_type -3 137 54 236 243 47 26 chr3 69497593 69497761 -158026817 + L1MC/D LINE L1 5754 5925 -297 324 339 31 31 chr3 69498083 69498213 -158026365 - L2 LINE L2 -3 3310 3181 306 325 89 8 chr3 69498564 69498687 -158025891 + L2 LINE L2 2948 3080 -192 197 265 92 61 chr3 69498808 69498906 -158025672 - MER5B DNA MER1_type -62 116 16 220 287 23 58 chr3 69498923 69499010 -158025568 + L2 LINE L2 3168 3251 -21 193 214 24 0 chr3 69499033 69499075 -158025503 - L2 LINE L2 -5 3267 3225 1091 186 69 29 chr3 69499774 69500080 -158024498 + MER33 DNA MER1_type 5 322 -2 2380 114 0 6 chr3 69500377 69500727 -158023851 + THE1B LTR MaLR 17 364 0 214 115 39 0 chr3 69501080 69501132 -158023446 + (CAA)n Simple_repeat Simple_repeat 1 54 0 833 271 41 9 chr3 69501155 69501376 -158023202 - MIR SINE MIR -19 243 16 226 309 60 77 chr3 69502177 69502462 -158022116 + L2 LINE L2 1745 2024 -1290 225 0 0 0 chr3 69503148 69503173 -158021405 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 421 234 14 28 chr3 69504177 69504318 -158020260 + MER103 DNA DNA 7 145 -21 24 0 0 0 chr3 69505371 69505395 -158019183 + AT_rich Low_complexity Low_complexity 1 24 0 1347 196 51 71 chr3 69505844 69506292 -158018286 + L1MC4 LINE L1 6579 7017 -1025 378 0 0 0 chr3 69506334 69506376 -158018202 + (CA)n Simple_repeat Simple_repeat 1 42 0 420 223 110 15 chr3 69506398 69506648 -158017930 + L1MA9 LINE L1 6021 6288 -3 2829 193 79 61 chr3 69506655 69507592 -158016986 + L1MC4 LINE L1 7089 8042 0 236 380 72 0 chr3 69507645 69507811 -158016767 + MIR SINE MIR 85 262 0 221 274 71 24 chr3 69509181 69509265 -158015313 - L2 LINE L2 0 3272 3185 205 301 0 14 chr3 69509675 69509748 -158014830 + GA-rich Low_complexity Low_complexity 1 72 0 311 293 47 63 chr3 69509765 69509956 -158014622 + MER5A DNA MER1_type 1 188 -1 5214 138 36 1 chr3 69510624 69512236 -158012342 - L1PA16 LINE L1 -9 6157 4518 1025 232 5 0 chr3 69512298 69512509 -158012069 - MER58A DNA MER1_type -10 214 3 262 194 32 16 chr3 69512577 69512639 -158011939 + LTR50 LTR ERVL 8 70 -725 203 343 29 0 chr3 69513051 69513121 -158011457 - L2 LINE L2 0 3272 3201 230 301 158 0 chr3 69514397 69514530 -158010048 + MIR SINE MIR 86 239 -23 2337 148 28 35 chr3 69514580 69515014 -158009564 - MSTB1 LTR MaLR -1 431 1 6152 218 56 15 chr3 69515014 69516534 -158008044 - MSTB1-int LTR MaLR 0 1651 70 1770 193 42 20 chr3 69516557 69516966 -158007612 - MSTB1 LTR MaLR 0 432 15 280 300 69 39 chr3 69516995 69517125 -158007453 + MIR3 SINE MIR 10 143 -65 420 225 0 0 chr3 69517483 69517563 -158007015 + L2 LINE L2 3234 3313 0 320 345 120 0 chr3 69517969 69518111 -158006467 + L2 LINE L2 3110 3268 -4 207 176 0 0 chr3 69518124 69518158 -158006420 + (TGGA)n Simple_repeat Simple_repeat 3 36 0 521 204 69 3 chr3 69518276 69518421 -158006157 - MLT1A1 LTR MaLR 0 365 228 455 213 11 0 chr3 69518462 69518556 -158006022 - MLT1A1 LTR MaLR -268 97 3 374 247 22 0 chr3 69518620 69518709 -158005869 - MIR SINE MIR 0 262 172 2498 140 39 2 chr3 69520206 69520619 -158003959 + MSTA LTR MaLR 1 428 0 1279 191 60 97 chr3 69521709 69522212 -158002366 - MLT1D LTR MaLR -1 504 21 1725 154 0 7 chr3 69522244 69522529 -158002049 + MER1B DNA MER1_type 57 339 0 312 172 0 0 chr3 69523455 69523513 -158001065 + GA-rich Low_complexity Low_complexity 1 58 0 278 367 20 7 chr3 69524444 69524594 -157999984 - MIR3 SINE MIR -48 160 9 1557 214 136 52 chr3 69524678 69525261 -157999317 - LTR27 LTR ERV1 -2 634 3 712 182 0 63 chr3 69525551 69525694 -157998884 + FLAM_C SINE Alu 1 134 -9 1829 127 47 133 chr3 69526114 69526369 -157998209 + Tigger2a DNA MER2_type 9 208 -2500 7715 21 0 0 chr3 69526369 69527370 -157997208 - L1PA4 LINE L1 -3 6152 5153 1829 127 47 133 chr3 69527370 69527580 -157996998 + Tigger2a DNA MER2_type 208 434 0 469 236 230 0 chr3 69527986 69528160 -157996418 - MIR SINE MIR -33 229 16 258 214 243 0 chr3 69528402 69528472 -157996106 + Tigger5 DNA MER2_type 2234 2320 -3 192 293 0 0 chr3 69528481 69528522 -157996056 + L2 LINE L2 3198 3238 -75 1792 91 4 25 chr3 69528806 69529047 -157995531 + AluSx SINE Alu 58 293 -19 523 332 128 32 chr3 69529631 69530389 -157994189 + L2 LINE L2 2508 3313 0 551 344 171 30 chr3 69530394 69530832 -157993746 + L2 LINE L2 2772 3272 0 555 295 40 87 chr3 69531934 69532466 -157992112 - MER34 LTR ERV1 -35 507 1 3975 189 18 7 chr3 69534542 69535267 -157989311 + MER44D DNA MER2_type 1 605 0 204 40 0 0 chr3 69535800 69535825 -157988753 + (T)n Simple_repeat Simple_repeat 1 25 0 925 291 19 12 chr3 69536036 69536356 -157988222 - MER93a LTR ERV1 0 402 81 2144 129 3 0 chr3 69537313 69537615 -157986963 - AluSp SINE Alu -10 303 1 488 298 48 24 chr3 69539151 69539319 -157985259 + MIR SINE MIR 5 176 -86 262 333 35 0 chr3 69540428 69540542 -157984036 + L2 LINE L2 2233 2350 -964 261 232 12 12 chr3 69540618 69540700 -157983878 - MLT1L LTR MaLR -13 602 521 305 219 12 24 chr3 69540758 69540840 -157983738 - LTR33A LTR ERVL 0 523 443 683 303 33 43 chr3 69541671 69541971 -157982607 + L2 LINE L2 3017 3313 0 589 103 22 110 chr3 69542275 69542373 -157982205 + L1MB2 LINE L1 6047 6152 -19 2541 55 0 3 chr3 69542373 69542685 -157981893 + AluY SINE Alu 1 311 0 333 0 0 0 chr3 69542690 69542727 -157981851 + (TA)n Simple_repeat Simple_repeat 1 37 0 589 103 22 110 chr3 69542727 69542758 -157981820 + L1MB2 LINE L1 6156 6170 -1 23 33 0 0 chr3 69542759 69542789 -157981789 + AT_rich Low_complexity Low_complexity 1 30 0 390 335 74 11 chr3 69542796 69542972 -157981606 - MIR SINE MIR -51 211 25 1493 187 8 0 chr3 69543143 69543405 -157981173 - AluJb SINE Alu -6 306 43 253 217 58 0 chr3 69544006 69544075 -157980503 + L1P LINE L1 5334 5406 -759 296 234 107 91 chr3 69544228 69544677 -157979901 + L1ME4a LINE L1 5636 6091 -30 24 0 0 0 chr3 69546045 69546069 -157978509 + AT_rich Low_complexity Low_complexity 1 24 0 225 0 0 0 chr3 69546148 69546173 -157978405 + (A)n Simple_repeat Simple_repeat 1 25 0 271 262 34 81 chr3 69546575 69546747 -157977831 + MER5A DNA MER1_type 1 168 -12 1632 172 28 31 chr3 69546771 69547061 -157977517 - AluJo SINE Alu -23 289 1 25 51 0 0 chr3 69547064 69547103 -157977475 + AT_rich Low_complexity Low_complexity 1 39 0 277 128 0 0 chr3 69547240 69547279 -157977299 - MIR SINE MIR -95 113 75 1743 114 0 84 chr3 69547386 69547694 -157976884 + AluSx SINE Alu 21 302 -10 2196 125 3 7 chr3 69547722 69548026 -157976552 - AluSx SINE Alu -9 303 1 252 253 111 19 chr3 69548028 69548190 -157976388 + MER104 DNA Tc2 4 180 0 239 380 21 26 chr3 69548466 69548658 -157975920 + L2 LINE L2 2677 2867 -447 341 359 34 38 chr3 69548723 69548960 -157975618 + L2 LINE L2 3005 3240 -32 452 192 0 0 chr3 69549979 69550057 -157974521 + Tigger7 DNA MER2_type 7 84 -255 2045 142 7 0 chr3 69550057 69550359 -157974219 + AluSx SINE Alu 1 304 -8 336 24 0 0 chr3 69550359 69550400 -157974178 + (CA)n Simple_repeat Simple_repeat 2 42 0 387 0 0 0 chr3 69552621 69552664 -157971914 + (TA)n Simple_repeat Simple_repeat 1 43 0 * 534 16 0 0 chr3 69552663 69552726 -157971852 + (GA)n Simple_repeat Simple_repeat 2 64 0 889 196 0 13 chr3 69552727 69552880 -157971698 - FRAM SINE Alu -33 143 1 180 250 50 33 chr3 69553598 69553658 -157970920 - MER5A DNA MER1_type -94 95 35 * 186 268 18 36 chr3 69553605 69553661 -157970917 + MER5A DNA MER1_type 115 169 -20 488 262 45 17 chr3 69553819 69553984 -157970594 + MIR SINE MIR 24 187 -61 2101 103 50 0 chr3 69554003 69554285 -157970293 + AluSx SINE Alu 1 296 -16 265 250 29 0 chr3 69554285 69554383 -157970195 + (TATATG)n Simple_repeat Simple_repeat 5 105 0 182 235 39 20 chr3 69554532 69554583 -157969995 - L2 LINE L2 -2 3270 3219 342 333 16 0 chr3 69554587 69554716 -157969862 + LTR33 LTR ERVL 15 145 -376 1509 170 6 91 chr3 69556243 69556584 -157967994 - AluJb SINE Alu 0 312 1 2497 125 30 14 chr3 69556826 69557195 -157967383 + THE1C LTR MaLR 1 375 0 212 351 21 11 chr3 69557463 69557557 -157967021 + L2 LINE L2 3153 3247 -25 2088 124 30 3 chr3 69557696 69557995 -157966583 - AluSc SINE Alu -2 307 1 288 351 70 0 chr3 69558839 69558953 -157965625 + MIR3 SINE MIR 69 190 -18 439 345 69 13 chr3 69558970 69559202 -157965376 - MIR SINE MIR -10 252 8 332 22 22 0 chr3 69559399 69559444 -157965134 + (TG)n Simple_repeat Simple_repeat 2 47 0 249 236 0 0 chr3 69559446 69559501 -157965077 + L1MC4 LINE L1 6648 6702 -1340 238 276 0 0 chr3 69559528 69559604 -157964974 - L1MC4 LINE L1 -1339 6703 6628 231 244 0 24 chr3 69559624 69559706 -157964872 - L1MC4 LINE L1 -1349 6693 6614 195 222 0 0 chr3 69559708 69559753 -157964825 + (TA)n Simple_repeat Simple_repeat 1 45 0 959 157 99 0 chr3 69559765 69559956 -157964622 + MER2 DNA MER2_type 1 210 -135 358 326 72 64 chr3 69560347 69561042 -157963536 + L2 LINE L2 2556 3312 -1 244 250 25 25 chr3 69563595 69563675 -157960903 + GA-rich Low_complexity Low_complexity 4 83 0 469 280 78 32 chr3 69564573 69564791 -157959787 + L2 LINE L2 3073 3300 -13 475 329 108 6 chr3 69565351 69565518 -157959060 + MER91A DNA MER1_type 10 193 -3 194 236 164 0 chr3 69566377 69566432 -157958146 + MIR SINE MIR 84 147 -61 203 290 93 28 chr3 69567207 69567314 -157957264 - MIR SINE MIR -47 215 102 259 296 88 48 chr3 69568265 69568390 -157956188 + L2 LINE L2 3138 3267 -5 2073 133 0 0 chr3 69568503 69568788 -157955790 + AluSg1 SINE Alu 8 292 -17 315 299 60 54 chr3 69568867 69569051 -157955527 + MLT1K LTR MaLR 2 186 -402 2397 96 3 0 chr3 69569230 69569532 -157955046 - AluSp SINE Alu -10 303 1 523 351 70 0 chr3 69570782 69571024 -157953554 + MIR SINE MIR 2 260 -2 22 0 0 0 chr3 69571084 69571106 -157953472 + AT_rich Low_complexity Low_complexity 1 22 0 1450 169 3 86 chr3 69571139 69571476 -157953102 - AluJo SINE Alu -2 310 2 500 230 57 73 chr3 69571850 69572289 -157952289 + MLT1H LTR MaLR 4 542 0 286 251 0 168 chr3 69572954 69573133 -157951445 - MIR SINE MIR -33 229 81 1338 174 36 12 chr3 69573258 69573505 -157951073 - L1MA6 LINE L1 -5 6295 6043 376 235 6 6 chr3 69574945 69575042 -157949536 + MER63 DNA MER1_type 732 1052 -8 354 331 73 76 chr3 69578263 69578607 -157945971 + MLT1K LTR MaLR 18 360 -228 2228 97 3 10 chr3 69578641 69578951 -157945627 - AluSp SINE Alu -5 308 1 518 266 0 9 chr3 69579150 69579263 -157945315 - FLAM_A SINE Alu -18 124 13 2178 115 0 3 chr3 69579290 69579586 -157944992 + AluSx SINE Alu 1 295 -17 1043 298 79 16 chr3 69579969 69580706 -157943872 + L2 LINE L2 2523 3313 0 271 296 45 38 chr3 69581401 69581533 -157943045 - L1MC/D LINE L1 -2266 5542 5410 198 0 0 0 chr3 69582019 69582041 -157942537 + (A)n Simple_repeat Simple_repeat 1 22 0 490 292 127 35 chr3 69582489 69582749 -157941829 - L2 LINE L2 -2 3311 3028 1123 86 0 0 chr3 69582773 69582912 -157941666 - MER85 DNA T2_type 0 139 1 1604 148 93 14 chr3 69583568 69583846 -157940732 + AluJb SINE Alu 1 300 -12 306 291 66 56 chr3 69584118 69584331 -157940247 + MLT1K LTR MaLR 19 233 -355 2274 89 7 0 chr3 69584726 69585019 -157939559 + AluSg SINE Alu 1 295 -15 1662 198 3 10 chr3 69585121 69585414 -157939164 + AluJb SINE Alu 1 291 -21 25 0 0 0 chr3 69585589 69585614 -157938964 + AT_rich Low_complexity Low_complexity 1 25 0 30 45 0 0 chr3 69585736 69585780 -157938798 + AT_rich Low_complexity Low_complexity 1 44 0 401 288 36 0 chr3 69585996 69586135 -157938443 + MIR3 SINE MIR 62 205 -3 2275 235 47 22 chr3 69586770 69586969 -157937609 + MER90 LTR ERV1 6 198 -416 2199 108 27 0 chr3 69586969 69587266 -157937312 - AluSq SINE Alu -8 305 1 2275 235 47 22 chr3 69587266 69587658 -157936920 + MER90 LTR ERV1 198 612 -2 587 189 101 0 chr3 69587673 69587790 -157936788 - MER106B DNA MER1_type -1 1058 922 1845 172 0 0 chr3 69587790 69588075 -157936503 - AluJb SINE Alu -27 285 1 587 189 101 0 chr3 69588075 69588105 -157936473 - MER106B DNA MER1_type -137 922 896 579 298 28 55 chr3 69588249 69588504 -157936074 - MIR SINE MIR 0 262 15 321 82 0 0 chr3 69588779 69588828 -157935750 + (TG)n Simple_repeat Simple_repeat 2 50 0 198 0 0 0 chr3 69589483 69589505 -157935073 + (GA)n Simple_repeat Simple_repeat 2 23 0 204 361 174 14 chr3 69591209 69591422 -157933156 - MIR SINE MIR -13 249 3 344 246 18 27 chr3 69591816 69591926 -157932652 - MIR SINE MIR -134 128 20 304 294 81 96 chr3 69592104 69592311 -157932267 + L2 LINE L2 2854 3054 -218 1038 198 84 0 chr3 69592311 69592513 -157932065 - MER20 DNA MER1_type 0 219 1 304 294 81 96 chr3 69592513 69592699 -157931879 + L2 LINE L2 3054 3241 -31 222 191 0 0 chr3 69593883 69593925 -157930653 + L2 LINE L2 3272 3313 0 554 317 114 9 chr3 69595099 69595326 -157929252 - MIR SINE MIR -8 254 4 208 293 102 48 chr3 69595612 69595759 -157928819 + L2 LINE L2 2871 3025 -288 214 304 0 0 chr3 69596032 69596088 -157928490 + (TA)n Simple_repeat Simple_repeat 2 57 0 1464 191 44 4 chr3 69596407 69596680 -157927898 + AluJb SINE Alu 1 284 -28 587 338 60 25 chr3 69598785 69599099 -157925479 + MLT1K LTR MaLR 242 566 -22 22 0 0 0 chr3 69600291 69600313 -157924265 + AT_rich Low_complexity Low_complexity 1 22 0 216 111 0 0 chr3 69600332 69600368 -157924210 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 1063 203 35 18 chr3 69600368 69600595 -157923983 - AluJo SINE Alu -24 288 58 301 351 45 72 chr3 69600611 69600909 -157923669 - L2 LINE L2 -10 3303 3020 2025 110 3 38 chr3 69600909 69601228 -157923350 - AluSp SINE Alu 0 311 3 301 351 45 72 chr3 69601228 69601415 -157923163 - L2 LINE L2 -293 3020 2830 288 0 0 0 chr3 69602539 69602571 -157922007 + (TA)n Simple_repeat Simple_repeat 2 33 0 2337 79 7 0 chr3 69602572 69602864 -157921714 - AluSc SINE Alu -15 294 1 280 386 53 8 chr3 69603167 69603300 -157921278 - MIR SINE MIR -81 127 20 1293 199 19 19 chr3 69603300 69603567 -157921011 - L1MB5 LINE L1 0 6174 5908 232 290 16 0 chr3 69603579 69603641 -157920937 + L2 LINE L2 3250 3312 -1 857 196 14 79 chr3 69604543 69604725 -157919853 + MER3 DNA MER1_type 2 171 -38 2165 106 3 0 chr3 69604725 69605028 -157919550 + AluSx SINE Alu 1 304 0 857 196 14 79 chr3 69605028 69605058 -157919520 + MER3 DNA MER1_type 171 201 -8 1988 124 4 0 chr3 69606962 69607237 -157917341 + AluSx SINE Alu 4 279 -33 354 245 19 0 chr3 69607422 69607528 -157917050 - MER103 DNA DNA -8 158 51 412 323 85 5 chr3 69607780 69607969 -157916609 - MIR SINE MIR -13 249 46 2301 107 3 7 chr3 69609791 69610100 -157914478 - AluSx SINE Alu -4 308 1 323 250 14 0 chr3 69610111 69610183 -157914395 - MIR SINE MIR -112 150 78 641 202 271 9 chr3 69610657 69610875 -157913703 - MER41B LTR ERV1 -190 445 171 1659 156 7 28 chr3 69611153 69611436 -157913142 + AluJo SINE Alu 5 281 -31 198 0 0 0 chr3 69611438 69611460 -157913118 + (CAAT)n Simple_repeat Simple_repeat 3 24 0 219 69 0 0 chr3 69611568 69611597 -157912981 + (A)n Simple_repeat Simple_repeat 1 29 0 2057 135 0 0 chr3 69611770 69612091 -157912487 + AluSx SINE Alu 1 321 0 654 169 39 7 chr3 69612480 69612634 -157911944 - L1MC3 LINE L1 -13 7772 7614 1185 194 35 4 chr3 69612642 69612869 -157911709 - AluJo SINE Alu -8 304 71 3742 201 42 16 chr3 69612892 69613803 -157910775 - L1MC3 LINE L1 -157 7628 6695 3279 191 48 43 chr3 69613837 69615092 -157909486 - L1MC3 LINE L1 -743 5403 4832 210 71 0 0 chr3 69616854 69616882 -157907696 + (T)n Simple_repeat Simple_repeat 1 28 0 213 245 0 0 chr3 69619009 69619058 -157905520 + A-rich Low_complexity Low_complexity 1 49 0 2073 118 0 49 chr3 69619121 69619249 -157905329 + AluSx SINE Alu 1 134 -178 1469 33 28 0 chr3 69619249 69619429 -157905149 + L1PA3 LINE L1 5968 6152 -3 2073 118 0 49 chr3 69619429 69619606 -157904972 + AluSx SINE Alu 134 291 -21 29 0 0 0 chr3 69619751 69619780 -157904798 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr3 69620394 69620418 -157904160 + AT_rich Low_complexity Low_complexity 1 24 0 2075 122 7 16 chr3 69620619 69620923 -157903655 + AluSq SINE Alu 1 301 -12 206 356 96 0 chr3 69622356 69622429 -157902149 - L2 LINE L2 -89 3183 3104 3836 155 16 18 chr3 69622597 69623538 -157901040 + L1PB3 LINE L1 4488 5431 -723 2007 147 0 0 chr3 69623538 69623851 -157900727 + AluSq SINE Alu 1 313 0 3836 155 16 18 chr3 69623851 69624212 -157900366 + L1PB3 LINE L1 5431 5791 -363 359 178 0 9 chr3 69624212 69624319 -157900259 + (TA)n Simple_repeat Simple_repeat 1 106 0 2289 126 11 8 chr3 69624319 69624684 -157899894 + L1PB3 LINE L1 5782 6147 -7 2507 163 17 56 chr3 69624748 69625269 -157899309 - MLT1D LTR MaLR -2 503 3 414 145 16 32 chr3 69625335 69625459 -157899119 + (CATA)n Simple_repeat Simple_repeat 4 125 0 903 172 180 4 chr3 69625858 69626119 -157898459 + MER33 DNA MER1_type 18 324 0 429 293 62 44 chr3 69626255 69626480 -157898098 - L3 LINE CR1 -82 1495 1267 265 306 16 0 chr3 69627945 69628069 -157896509 + MER112 DNA MER1_type 122 247 -13 209 297 172 47 chr3 69629567 69629695 -157894883 - L2 LINE L2 0 3272 3129 646 133 0 0 chr3 69630011 69630101 -157894477 - FLAM_A SINE Alu -19 123 34 417 322 20 13 chr3 69630772 69630921 -157893657 + MIR3 SINE MIR 16 165 -43 578 223 65 44 chr3 69631672 69631901 -157892677 + L1MD2 LINE L1 6125 6358 -1 2211 123 58 8 chr3 69632484 69632881 -157891697 + L1MA2 LINE L1 5883 6299 -5 466 303 70 45 chr3 69632885 69632917 -157891661 + L1ME LINE L1 5313 5343 -778 1869 146 0 64 chr3 69632917 69633245 -157891333 - AluJb SINE Alu -5 307 1 466 303 70 45 chr3 69633245 69633548 -157891030 + L1ME LINE L1 5343 5653 -468 1101 174 10 20 chr3 69633563 69633764 -157890814 + AluJb SINE Alu 100 298 -14 2317 50 0 78 chr3 69634481 69634833 -157889745 + AluY SINE Alu 1 327 0 183 100 0 0 chr3 69635810 69635840 -157888738 + (TG)n Simple_repeat Simple_repeat 2 31 0 219 336 86 35 chr3 69637534 69637650 -157886928 - L2 LINE L2 0 3313 3192 184 362 14 65 chr3 69637942 69638080 -157886498 - L2 LINE L2 -9 3263 3133 3004 66 2 5 chr3 69638320 69638716 -157885862 + L1PA8A LINE L1 5724 6118 -13 368 270 31 21 chr3 69638848 69639050 -157885528 + L1P LINE L1 4881 5084 -1062 1311 269 27 66 chr3 69639173 69639904 -157884674 + L1MC4a LINE L1 5259 5961 -1847 222 288 0 0 chr3 69639904 69639963 -157884615 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 280 323 8 15 chr3 69641733 69641866 -157882712 - MLT1K LTR MaLR -3 585 454 3976 158 0 6 chr3 69643150 69643829 -157880749 + L1PA16 LINE L1 5476 6150 -16 1576 127 48 0 chr3 69643864 69644093 -157880485 + AluSg SINE Alu 1 240 -70 978 95 0 0 chr3 69644093 69644244 -157880334 + AluSg/x SINE Alu 157 307 0 665 316 98 35 chr3 69646065 69646490 -157878088 + L2 LINE L2 2595 3042 -271 978 167 115 0 chr3 69646594 69646864 -157877714 + Charlie1 DNA MER1_type 2461 2761 0 289 284 23 23 chr3 69647421 69647509 -157877069 - MIR SINE MIR -152 110 23 336 48 0 0 chr3 69647512 69647554 -157877024 + (CATA)n Simple_repeat Simple_repeat 3 44 0 21 0 0 0 chr3 69648218 69648239 -157876339 + AT_rich Low_complexity Low_complexity 1 21 0 525 240 47 13 chr3 69648407 69648557 -157876021 + MER69A DNA AcHobo 19 173 -4 25 0 0 0 chr3 69649084 69649109 -157875469 + AT_rich Low_complexity Low_complexity 1 25 0 529 323 77 24 chr3 69650024 69650528 -157874050 + L2 LINE L2 2593 3124 -189 253 351 11 11 chr3 69650630 69650724 -157873854 + L2 LINE L2 3204 3297 -16 321 68 0 0 chr3 69650854 69650898 -157873680 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 378 58 0 0 chr3 69651111 69651163 -157873415 - MADE1 DNA Mariner 0 80 29 1184 64 0 0 chr3 69651163 69651303 -157873275 + AluSg SINE Alu 1 140 -170 21 0 0 0 chr3 69651303 69651324 -157873254 + AT_rich Low_complexity Low_complexity 1 21 0 1175 105 0 0 chr3 69651413 69651566 -157873012 + AluSg SINE Alu 141 293 -19 294 51 0 0 chr3 69651566 69651605 -157872973 - MADE1 DNA Mariner -41 39 1 512 262 149 14 chr3 69651840 69652061 -157872517 - MIR SINE MIR -8 254 4 184 191 0 64 chr3 69652885 69652932 -157871646 - MIR SINE MIR -207 55 12 387 0 0 0 chr3 69653357 69653400 -157871178 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 1952 131 18 0 chr3 69653400 69653675 -157870903 - AluSx SINE Alu -32 280 1 2427 82 3 0 chr3 69654845 69655149 -157869429 + AluSp SINE Alu 1 305 -8 1086 186 4 58 chr3 69656867 69657142 -157867436 + L1MB7 LINE L1 5902 6161 -23 21 0 0 0 chr3 69657151 69657172 -157867406 + AT_rich Low_complexity Low_complexity 1 21 0 355 289 237 0 chr3 69657180 69657315 -157867263 + MIR SINE MIR 25 191 -71 212 403 0 0 chr3 69657400 69657477 -157867101 + MIR SINE MIR 73 149 -59 316 246 156 16 chr3 69657516 69657638 -157866940 - MIR SINE MIR -70 192 54 2043 137 7 10 chr3 69657797 69658103 -157866475 + AluSq SINE Alu 9 313 0 1390 197 24 31 chr3 69658354 69658643 -157865935 + AluJo SINE Alu 3 289 -23 856 203 25 10 chr3 69658717 69658919 -157865659 - MER3 DNA MER1_type -3 206 2 1813 164 17 3 chr3 69659361 69659660 -157864918 - AluSx SINE Alu -9 303 1 248 191 0 0 chr3 69659859 69659906 -157864672 + L1MC4 LINE L1 6656 6702 -1340 586 268 111 13 chr3 69659978 69660213 -157864365 - L1ME3A LINE L1 -43 6127 5870 467 231 99 8 chr3 69660279 69660400 -157864178 - MIR SINE MIR -3 259 128 872 207 57 5 chr3 69660404 69660597 -157863981 + MLT2C1 LTR ERVL 14 216 -181 277 322 177 38 chr3 69661179 69661524 -157863054 + L2 LINE L2 2350 2742 -572 586 203 97 90 chr3 69661531 69661831 -157862747 + L1MC5 LINE L1 7624 7925 -36 420 226 34 160 chr3 69662002 69662300 -157862278 + L2 LINE L2 2911 3138 -175 2528 96 16 33 chr3 69662300 69662666 -157861912 + THE1B LTR MaLR 1 360 -4 420 226 34 160 chr3 69662666 69662804 -157861774 + L2 LINE L2 3138 3292 -21 2162 114 3 3 chr3 69663877 69664183 -157860395 - AluSg SINE Alu -4 306 1 180 125 0 0 chr3 69665904 69665936 -157858642 + (T)n Simple_repeat Simple_repeat 1 32 0 254 318 37 9 chr3 69666148 69666255 -157858323 - MIR SINE MIR -37 225 116 2036 122 6 32 chr3 69666508 69666819 -157857759 + AluSx SINE Alu 1 303 -9 21 36 0 0 chr3 69666990 69667018 -157857560 + AT_rich Low_complexity Low_complexity 1 28 0 1321 208 24 20 chr3 69667932 69668230 -157856348 + AluJo SINE Alu 1 299 -13 280 317 19 61 chr3 69668528 69668693 -157855885 + MIR3 SINE MIR 44 200 -46 191 211 39 19 chr3 69670303 69670355 -157854223 - MER5B DNA MER1_type -28 150 98 370 292 64 41 chr3 69671063 69671234 -157853344 + L2 LINE L2 3112 3286 -27 283 309 16 32 chr3 69671234 69671357 -157853221 + MLT1J LTR MaLR 1 121 -390 243 304 0 0 chr3 69671374 69671430 -157853148 + MLT1J LTR MaLR 226 281 -230 233 283 0 0 chr3 69671469 69671529 -157853049 + (CATATA)n Simple_repeat Simple_repeat 4 63 0 299 198 86 12 chr3 69671933 69672014 -157852564 - L2 LINE L2 -67 3246 3160 361 325 191 29 chr3 69674118 69674536 -157850042 + L1MC1 LINE L1 5355 5840 -1968 298 204 139 9 chr3 69674711 69674819 -157849759 - L2 LINE L2 -603 2711 2590 1519 181 59 3 chr3 69675580 69675883 -157848695 + L1MC1 LINE L1 6008 6327 -6 627 254 0 8 chr3 69675897 69676120 -157848458 + FLAM_A SINE Alu 1 222 0 610 311 29 5 chr3 69676344 69676553 -157848025 + MIR SINE MIR 49 262 0 1946 241 75 4 chr3 69677354 69677860 -157846718 + MER34 LTR ERV1 1 542 0 306 352 25 25 chr3 69678021 69678183 -157846395 + MLT1K LTR MaLR 84 245 -343 288 0 0 0 chr3 69678344 69678376 -157846202 + (CA)n Simple_repeat Simple_repeat 2 33 0 303 309 21 0 chr3 69678376 69678406 -157846172 + GA-rich Low_complexity Low_complexity 1 29 -70 2133 148 37 3 chr3 69678406 69678758 -157845820 - THE1B LTR MaLR 0 364 1 303 309 21 0 chr3 69678758 69678824 -157845754 + GA-rich Low_complexity Low_complexity 29 99 0 1421 163 13 73 chr3 69680937 69681237 -157843341 + AluJo SINE Alu 22 303 -9 2307 78 0 25 chr3 69681363 69681682 -157842896 + AluY SINE Alu 1 311 0 228 250 150 8 chr3 69682612 69682732 -157841846 - L1MC4 LINE L1 -1 8041 7905 363 288 24 96 chr3 69684031 69684281 -157840297 - MER102a DNA MER1_type 0 330 99 802 93 0 0 chr3 69684427 69684535 -157840043 + AluSg/x SINE Alu 199 306 -4 488 216 4 18 chr3 69684994 69685132 -157839446 + MLT1A1 LTR MaLR 267 365 0 380 291 70 26 chr3 69685156 69685308 -157839270 - MIR SINE MIR -65 143 8 1224 190 60 37 chr3 69685563 69685911 -157838667 + LTR37A LTR ERV1 71 426 0 2284 114 31 0 chr3 69686356 69686714 -157837864 + L1PA11 LINE L1 5798 6166 -8 324 0 0 0 chr3 69686720 69686756 -157837822 + (CA)n Simple_repeat Simple_repeat 2 37 0 364 130 72 14 chr3 69686900 69686969 -157837609 + MER92B LTR ERV1 1 73 -563 383 167 0 0 chr3 69687072 69687138 -157837440 + MER92C LTR ERV1 487 552 -2 1077 231 59 62 chr3 69687227 69687600 -157836978 - MER39 LTR ERV1 0 707 336 304 231 39 58 chr3 69687597 69687701 -157836877 - LTR48B LTR ERV1 -539 105 4 * 621 294 4 32 chr3 69688178 69688406 -157836172 - MIR SINE MIR 0 262 44 24 32 0 0 chr3 69689000 69689031 -157835547 + AT_rich Low_complexity Low_complexity 1 31 0 3364 135 19 76 chr3 69689273 69689946 -157834632 + MER41B LTR ERV1 1 635 0 1203 222 71 81 chr3 69690378 69690844 -157833734 + MER39 LTR ERV1 109 707 0 450 241 69 0 chr3 69690866 69691011 -157833567 - LTR37B LTR ERV1 0 468 314 1065 189 104 131 chr3 69691013 69691425 -157833153 + MER92C LTR ERV1 1 401 -153 2253 256 77 13 chr3 69691485 69692387 -157832191 + L1ME1 LINE L1 5101 6054 -112 622 212 137 24 chr3 69693490 69693702 -157830876 - MER106A DNA MER1_type 0 236 1 3634 207 42 23 chr3 69693970 69695233 -157829345 + L1MB8 LINE L1 4883 6172 -6 541 264 19 19 chr3 69695254 69695413 -157829165 + HAL1 LINE L1 360 518 -1989 * 1182 290 72 23 chr3 69695403 69695962 -157828616 + HAL1 LINE L1 1880 2465 -42 1855 198 79 31 chr3 69697351 69697831 -157826747 + MLT1D LTR MaLR 1 503 -2 426 342 34 20 chr3 69698284 69698433 -157826145 - L2 LINE L2 0 3272 3122 1832 161 0 10 chr3 69699772 69700082 -157824496 + AluSq SINE Alu 1 307 -6 203 333 93 0 chr3 69700413 69700488 -157824090 + L2 LINE L2 3190 3271 -1 482 285 215 0 chr3 69700531 69700745 -157823833 - MIR SINE MIR -1 261 2 2083 110 3 20 chr3 69701982 69702282 -157822296 + AluSg SINE Alu 1 295 -15 27 29 0 0 chr3 69702597 69702631 -157821947 + AT_rich Low_complexity Low_complexity 1 34 0 352 337 70 84 chr3 69702701 69703060 -157821518 + L2 LINE L2 2914 3267 -5 1363 239 89 34 chr3 69703776 69704223 -157820355 + MER110 LTR ERV1 20 491 0 186 43 0 0 chr3 69704281 69704304 -157820274 + (CA)n Simple_repeat Simple_repeat 1 23 0 224 233 0 0 chr3 69704306 69704349 -157820229 + L2 LINE L2 3252 3294 -19 2289 88 3 0 chr3 69704647 69704941 -157819637 - AluY SINE Alu -16 295 1 2382 171 9 14 chr3 69705263 69705689 -157818889 - MSTB LTR MaLR 0 426 3 2808 156 22 67 chr3 69705902 69706542 -157818036 + LTR9 LTR ERV1 2 612 0 2756 256 71 15 chr3 69706579 69707454 -157817124 + L1MD3 LINE L1 46 969 -5076 * 2870 229 31 90 chr3 69707435 69708433 -157816145 + L1MD3 LINE L1 3298 4234 -2330 2144 99 0 3 chr3 69708433 69708717 -157815861 + AluY SINE Alu 29 311 0 2870 229 31 90 chr3 69708717 69708963 -157815615 + L1MD3 LINE L1 4234 4493 -2071 1046 273 131 36 chr3 69708968 69709412 -157815166 + MLT1D LTR MaLR 1 486 -19 1656 220 77 46 chr3 69709419 69711452 -157813126 + L1MD3 LINE L1 4492 6762 0 219 69 0 0 chr3 69711886 69711915 -157812663 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 57 0 0 chr3 69712003 69712038 -157812540 + AT_rich Low_complexity Low_complexity 1 35 0 448 220 0 0 chr3 69712069 69712169 -157812409 - L1MB7 LINE L1 -31 6153 6054 1004 241 61 51 chr3 69713478 69713889 -157810689 + LTR37B LTR ERV1 50 464 -4 461 253 71 40 chr3 69714148 69714208 -157810370 + MLT2C2 LTR ERVL 1 204 -260 594 217 0 22 chr3 69714208 69714346 -157810232 + MLT1E3 LTR MaLR 78 212 -412 271 259 0 0 chr3 69714349 69714407 -157810171 - MLT1G3 LTR MaLR -239 291 234 425 213 113 13 chr3 69714420 69714570 -157810008 - L1MA4 LINE L1 0 6300 6136 334 264 0 0 chr3 69714599 69714671 -157809907 - MLT1G3 LTR MaLR -306 224 153 2261 100 0 0 chr3 69715833 69716124 -157808454 - AluSx SINE Alu -21 291 1 202 224 0 41 chr3 69716197 69716246 -157808332 + MIR SINE MIR 206 252 -10 220 254 36 0 chr3 69716354 69716409 -157808169 + GA-rich Low_complexity Low_complexity 2 58 0 553 230 15 66 chr3 69716430 69716542 -157808036 + MIR SINE MIR 1 101 -161 1711 259 79 14 chr3 69716542 69717048 -157807530 - MLT1F LTR MaLR 0 542 4 553 230 15 66 chr3 69717048 69717152 -157807426 + MIR SINE MIR 101 209 -53 351 0 0 0 chr3 69717222 69717261 -157807317 + (TG)n Simple_repeat Simple_repeat 1 39 0 1373 261 54 0 chr3 69717291 69717736 -157806842 - Charlie4a DNA MER1_type -22 486 18 566 228 164 87 chr3 69718890 69719202 -157805376 + MLT1F1 LTR MaLR 1 361 -206 797 243 67 75 chr3 69719638 69719693 -157804885 + MLT1C LTR MaLR 75 129 -338 1625 186 43 138 chr3 69719693 69720369 -157804209 - LTR9 LTR ERV1 0 612 1 797 243 67 75 chr3 69720369 69720700 -157803878 + MLT1C LTR MaLR 129 458 -9 379 279 78 13 chr3 69722970 69723124 -157801454 - MIR3 SINE MIR 0 208 45 2171 180 34 14 chr3 69723273 69723718 -157800860 - L1MD1 LINE L1 -168 6468 6015 229 125 25 0 chr3 69723718 69723758 -157800820 - MSTB1 LTR MaLR 0 432 392 929 159 31 18 chr3 69723760 69723923 -157800655 + FAM SINE Alu 1 165 -10 2055 144 39 39 chr3 69723927 69724336 -157800242 - MSTB1 LTR MaLR -23 409 1 478 157 11 11 chr3 69724336 69724425 -157800153 - L1MD1 LINE L1 -619 6017 5929 341 250 0 0 chr3 69724422 69724498 -157800080 + L1M4 LINE L1 4863 4938 -1208 * 2135 112 50 34 chr3 69724508 69724866 -157799712 + THE1B LTR MaLR 1 364 0 240 254 30 0 chr3 69724866 69724923 -157799655 + GA-rich Low_complexity Low_complexity 8 69 0 2926 243 70 21 chr3 69724972 69726313 -157798265 - L1MD1 LINE L1 -743 5797 4525 2818 238 58 28 chr3 69726414 69727142 -157797436 - MER21B LTR ERV1 -113 750 1 712 277 66 0 chr3 69727151 69727425 -157797153 - L1MD1 LINE L1 -2014 4526 4235 2443 156 48 0 chr3 69727432 69727869 -157796709 + LTR24 LTR ERV1 10 467 0 540 224 0 9 chr3 69727896 69728012 -157796566 - L1MD1 LINE L1 -2336 4204 4090 630 179 16 0 chr3 69728072 69728195 -157796383 - L1MD1 LINE L1 -4585 1955 1831 2382 249 73 34 chr3 69728214 69728914 -157795664 - L1MD1 LINE L1 -5811 729 3 332 314 76 50 chr3 69729352 69729629 -157794949 + L2 LINE L2 2376 2659 -655 233 269 32 11 chr3 69732173 69732266 -157792312 + MLT1J LTR MaLR 101 195 -316 264 255 37 33 chr3 69732312 69732501 -157792077 + MLT1I LTR MaLR 266 409 0 432 274 8 0 chr3 69733075 69733192 -157791386 - MIR SINE MIR -24 238 121 496 193 102 28 chr3 69733243 69733419 -157791159 - MER53 DNA DNA 0 189 1 421 322 13 13 chr3 69736576 69736725 -157787853 - MIR SINE MIR -1 261 113 465 244 98 0 chr3 69736805 69736928 -157787650 + MIR SINE MIR 35 169 -93 309 51 0 0 chr3 69737147 69737186 -157787392 + (TA)n Simple_repeat Simple_repeat 1 39 0 390 211 32 57 chr3 69737189 69737312 -157787266 + LTR37B LTR ERV1 332 451 -17 180 328 69 0 chr3 69737325 69737383 -157787195 + MIR SINE MIR 165 226 -36 180 195 24 24 chr3 69738609 69738650 -157785928 + L2 LINE L2 3180 3220 -93 651 255 85 83 chr3 69739411 69739907 -157784671 - L1MC4 LINE L1 -3 8039 7539 180 0 0 0 chr3 69739907 69739927 -157784651 + (TG)n Simple_repeat Simple_repeat 2 21 0 651 255 85 83 chr3 69739927 69740156 -157784422 - L1MC4 LINE L1 -503 7539 7312 378 230 0 91 chr3 69740488 69740623 -157783955 - MIR3 SINE MIR -11 197 75 466 225 84 0 chr3 69740636 69740778 -157783800 - MER112 DNA MER1_type -41 219 66 1621 177 31 24 chr3 69740811 69741099 -157783479 - AluJo SINE Alu -22 290 1 365 252 19 56 chr3 69741238 69741345 -157783233 - MER5A DNA MER1_type -80 109 7 317 327 50 27 chr3 69741656 69741802 -157782776 - MIR SINE MIR -61 147 7 538 270 110 57 chr3 69743334 69743459 -157781119 + MLT1G LTR MaLR 1 118 -472 722 145 17 8 chr3 69743459 69743576 -157781002 + FLAM_C SINE Alu 1 118 -15 538 270 110 57 chr3 69743576 69743961 -157780617 + MLT1G LTR MaLR 118 590 0 1828 209 41 56 chr3 69743961 69744496 -157780082 - L1ME3 LINE L1 -25 6137 5611 321 341 60 24 chr3 69745523 69745690 -157778888 + MER5A DNA MER1_type 14 186 -3 286 170 28 19 chr3 69746204 69746310 -157778268 + (TA)n Simple_repeat Simple_repeat 2 108 0 2104 151 0 3 chr3 69746436 69746748 -157777830 - AluSx SINE Alu -1 311 1 195 42 0 0 chr3 69747123 69747147 -157777431 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2330 191 36 20 chr3 69747372 69747869 -157776709 - MLT1D LTR MaLR 0 505 1 289 332 43 11 chr3 69749769 69749854 -157774724 - MIR SINE MIR -5 257 176 1766 181 17 0 chr3 69749854 69750147 -157774431 + AluJb SINE Alu 1 298 -14 289 332 43 11 chr3 69750147 69750248 -157774330 - MIR SINE MIR -86 176 65 1854 214 6 3 chr3 69750323 69750687 -157773891 - MLT1A1 LTR MaLR 0 365 1 236 371 21 10 chr3 69751132 69751229 -157773349 - MIR SINE MIR -57 151 54 903 223 124 6 chr3 69752268 69752614 -157771964 + MER113 DNA MER1_type? 34 420 -101 278 296 120 0 chr3 69752829 69752937 -157771641 - MIR SINE MIR -140 122 2 2097 84 42 3 chr3 69752960 69753247 -157771331 + AluY SINE Alu 1 298 -13 3521 112 11 40 chr3 69754729 69755272 -157769306 - MER1A DNA MER1_type 0 527 1 318 282 30 64 chr3 69755686 69755920 -157768658 + L2 LINE L2 3027 3252 -61 256 282 36 109 chr3 69755925 69755976 -157768602 + L2 LINE L2 3168 3208 -64 957 230 9 26 chr3 69755976 69756202 -157768376 - MER58A DNA MER1_type 0 224 3 256 282 36 109 chr3 69756202 69756260 -157768318 + L2 LINE L2 3208 3269 -3 274 297 64 15 chr3 69756444 69756646 -157767932 - LTR33 LTR ERVL -8 513 302 2256 140 22 0 chr3 69756949 69757305 -157767273 - THE1B LTR MaLR 0 364 1 423 235 147 15 chr3 69759248 69759384 -157765194 + L1ME LINE L1 5583 5736 -385 263 302 134 49 chr3 69759610 69759923 -157764655 + L2 LINE L2 2682 3019 -294 2339 110 3 0 chr3 69760223 69760532 -157764046 + AluSp SINE Alu 3 312 -1 767 306 18 9 chr3 69760735 69760954 -157763624 - MIR SINE MIR -17 245 25 23 68 0 0 chr3 69762211 69762255 -157762323 + AT_rich Low_complexity Low_complexity 1 44 0 3405 129 0 2 chr3 69762320 69762817 -157761761 + LOR1a LTR ERV1 1 496 -1 1759 147 0 42 chr3 69763168 69763481 -157761097 + AluSg SINE Alu 7 306 -4 604 202 205 48 chr3 69764214 69764495 -157760083 + MER33 DNA MER1_type 5 363 0 659 171 182 28 chr3 69765229 69765410 -157759168 - MER3 DNA MER1_type 0 209 1 268 286 203 0 chr3 69765953 69766086 -157758492 + MIR SINE MIR 1 160 -102 308 257 86 29 chr3 69767016 69767146 -157757432 - FLAM_C SINE Alu 0 141 6 266 272 19 10 chr3 69767713 69767816 -157756762 + (TA)n Simple_repeat Simple_repeat 1 104 0 819 210 62 78 chr3 69769310 69769369 -157755209 - MER8 DNA MER2_type 0 239 181 1908 119 61 0 chr3 69769369 69769646 -157754932 - AluSg SINE Alu -16 294 1 819 210 62 78 chr3 69769646 69769829 -157754749 - MER8 DNA MER2_type -58 181 1 1679 154 22 25 chr3 69770535 69770874 -157753704 - MER61B LTR ERV1 -2 423 1 390 151 47 0 chr3 69771098 69771184 -157753394 - L1MB3 LINE L1 -10 6173 6084 458 267 30 0 chr3 69774384 69774519 -157750059 - MER104 DNA Tc2 -6 174 36 1623 180 28 16 chr3 69775053 69775375 -157749203 + MER61C LTR ERV1 109 434 0 24 53 0 0 chr3 69775536 69775574 -157749004 + AT_rich Low_complexity Low_complexity 1 38 0 189 0 0 0 chr3 69776353 69776374 -157748204 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 2288 101 0 0 chr3 69776418 69776716 -157747862 - AluSq SINE Alu -15 298 1 423 279 117 40 chr3 69777364 69777586 -157746992 + MLT1H LTR MaLR 115 353 -196 21 82 0 0 chr3 69777790 69777839 -157746739 + AT_rich Low_complexity Low_complexity 1 49 0 266 326 86 26 chr3 69778949 69779182 -157745396 - MER102b DNA MER1_type -49 292 46 232 253 13 67 chr3 69779305 69779380 -157745198 + MER5C DNA MER1_type 1 71 -253 1165 234 30 24 chr3 69779390 69779867 -157744711 + MLT1E LTR MaLR 19 593 0 311 297 51 34 chr3 69780684 69780802 -157743776 + L2 LINE L2 3178 3297 -16 1207 232 0 56 chr3 69781153 69781472 -157743106 - AluJo SINE Alu -11 301 1 304 292 178 11 chr3 69782546 69782827 -157741751 + L1ME4a LINE L1 5556 5883 -238 21 36 0 0 chr3 69782841 69782869 -157741709 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr3 69785412 69785439 -157739139 + (A)n Simple_repeat Simple_repeat 1 27 0 1575 138 0 119 chr3 69785857 69786203 -157738375 - AluY SINE Alu 0 308 1 635 235 20 13 chr3 69786611 69786764 -157737814 + MER5A DNA MER1_type 30 183 -6 542 332 31 0 chr3 69787384 69787577 -157737001 + MIR SINE MIR 5 203 -59 2427 90 0 0 chr3 69787936 69788237 -157736341 - AluSc SINE Alu -8 301 1 240 35 0 0 chr3 69788640 69788669 -157735909 + (T)n Simple_repeat Simple_repeat 1 29 0 272 290 190 10 chr3 69789121 69789264 -157735314 + MIR SINE MIR 10 167 -61 341 331 191 7 chr3 69789752 69789888 -157734690 - L2 LINE L2 0 3272 3112 690 255 52 13 chr3 69790749 69790980 -157733598 - L1MA9 LINE L1 -38 6274 6035 213 296 171 0 chr3 69791159 69791247 -157733331 + L2 LINE L2 3151 3253 -19 287 278 33 0 chr3 69791365 69791455 -157733123 + MIR SINE MIR 96 188 -74 626 258 51 65 chr3 69792066 69792283 -157732295 - MIR SINE MIR 0 262 49 1009 239 88 58 chr3 69792314 69792812 -157731766 + LTR33 LTR ERVL 1 513 -8 243 356 56 31 chr3 69792858 69793018 -157731560 + L2 LINE L2 2895 3058 -214 1943 216 100 32 chr3 69793281 69793743 -157730835 + MLT2B2 LTR ERVL 3 495 -20 218 144 82 21 chr3 69793744 69793841 -157730737 + (TA)n Simple_repeat Simple_repeat 1 103 0 1417 106 216 13 chr3 69794848 69795084 -157729494 - AluSg1 SINE Alu -25 284 1 1445 169 142 42 chr3 69795121 69795481 -157729097 + MSTD LTR MaLR 1 396 0 1792 256 84 36 chr3 69796374 69797086 -157727492 - L1ME2 LINE L1 -54 6179 5434 22 0 0 0 chr3 69797093 69797115 -157727463 + AT_rich Low_complexity Low_complexity 1 22 0 952 234 21 17 chr3 69797211 69797502 -157727076 - L1ME2 LINE L1 -875 5340 5049 371 237 118 76 chr3 69797497 69797625 -157726953 - L1ME2 LINE L1 -5217 1179 1058 * 1677 180 20 7 chr3 69797625 69797931 -157726647 - AluJb SINE Alu -2 310 1 371 237 118 76 chr3 69797931 69798131 -157726447 - L1ME2 LINE L1 -5338 1058 837 305 245 65 36 chr3 69798143 69798282 -157726296 - L1ME2 LINE L1 -5602 794 652 276 188 25 88 chr3 69799945 69800025 -157724553 - L1MA4 LINE L1 -94 6206 6132 877 173 83 0 chr3 69800025 69800181 -157724397 - FAM SINE Alu -6 169 1 390 292 164 44 chr3 69801694 69802310 -157722268 - L2 LINE L2 0 3313 2632 193 367 100 0 chr3 69802462 69802582 -157721996 - L2 LINE L2 -598 2716 2585 207 88 0 0 chr3 69803764 69803798 -157720780 + (A)n Simple_repeat Simple_repeat 1 34 0 1866 138 0 34 chr3 69803948 69804244 -157720334 + AluSx SINE Alu 3 288 -24 951 200 5 54 chr3 69804484 69804689 -157719889 + MER3 DNA MER1_type 1 195 -14 242 313 39 86 chr3 69804783 69804911 -157719667 + L2 LINE L2 3116 3237 -35 1617 87 171 0 chr3 69805864 69806116 -157718462 - AluSc SINE Alu -4 295 1 2917 6 0 0 chr3 69806124 69806440 -157718138 - AluYb8 SINE Alu -2 316 1 1890 75 12 0 chr3 69806678 69806942 -157717636 - AluY SINE Alu 0 307 41 543 246 67 45 chr3 69808637 69808745 -157715833 - MIR SINE MIR 0 262 147 2172 183 42 2 chr3 69808745 69809155 -157715423 + MSTB LTR MaLR 1 426 0 543 246 67 45 chr3 69809155 69809225 -157715353 - MIR SINE MIR -115 147 80 2211 118 0 19 chr3 69809855 69810140 -157714438 + AluSq SINE Alu 1 281 -32 259 32 0 0 chr3 69810140 69810171 -157714407 + (GAAAA)n Simple_repeat Simple_repeat 2 95 0 2211 118 0 19 chr3 69810171 69810198 -157714380 + AluSq SINE Alu 281 307 -6 655 172 192 7 chr3 69810575 69810726 -157713852 - MER3 DNA MER1_type 0 209 31 1118 196 4 52 chr3 69812020 69812249 -157712329 + MER20 DNA MER1_type 2 219 0 2137 111 3 7 chr3 69812646 69812943 -157711635 + AluSc SINE Alu 1 296 -13 183 42 0 0 chr3 69813368 69813392 -157711186 + (CAA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr3 69813495 69813516 -157711062 + AT_rich Low_complexity Low_complexity 1 21 0 1537 208 11 4 chr3 69814256 69814535 -157710043 - AluJb SINE Alu -29 283 3 702 289 78 65 chr3 69815795 69816539 -157708039 + L1MC4 LINE L1 7280 8033 -9 812 70 43 0 chr3 69816829 69816944 -157707634 + L1PA10 LINE L1 5863 5982 -186 681 231 96 65 chr3 69816944 69817143 -157707435 + LTR1 LTR ERV1 1 192 -593 377 269 65 54 chr3 69818527 69818713 -157705865 - MIR SINE MIR -7 255 68 1977 135 3 10 chr3 69820555 69820859 -157703719 - AluSx SINE Alu -10 302 1 2247 101 3 0 chr3 69820907 69821203 -157703375 - AluSp SINE Alu -16 297 1 282 299 71 16 chr3 69821430 69821557 -157703021 - MIR SINE MIR -26 236 103 465 309 58 16 chr3 69822659 69822850 -157701728 - MIR SINE MIR -59 203 5 2355 69 7 0 chr3 69824204 69824494 -157700084 - AluSc SINE Alu -17 292 1 268 192 19 0 chr3 69824769 69824821 -157699757 - L1ME4a LINE L1 -77 6044 5992 21 36 0 0 chr3 69825235 69825263 -157699315 + AT_rich Low_complexity Low_complexity 1 28 0 583 280 39 22 chr3 69825389 69825571 -157699007 + MER5A DNA MER1_type 3 187 -2 939 200 17 11 chr3 69826179 69826359 -157698219 + MER5A DNA MER1_type 1 181 -8 539 292 20 87 chr3 69826385 69826683 -157697895 + L2 LINE L2 3036 3313 0 243 88 0 0 chr3 69826828 69826862 -157697716 + (CA)n Simple_repeat Simple_repeat 1 34 0 1744 88 171 0 chr3 69827717 69827968 -157696610 - AluSc SINE Alu -5 294 1 2697 42 3 0 chr3 69827973 69828286 -157696292 - AluYb8 SINE Alu -4 314 1 608 292 134 5 chr3 69829519 69829721 -157694857 - MIR SINE MIR -22 240 13 445 216 49 10 chr3 69830243 69830345 -157694233 - L1PA15 LINE L1 -2 6163 6058 1085 222 5 0 chr3 69830750 69830953 -157693625 - MER58A DNA MER1_type -8 216 13 348 289 0 53 chr3 69831316 69831506 -157693072 + C-rich Low_complexity Low_complexity 1 180 0 529 240 0 0 chr3 69832659 69832780 -157691798 + AluSq/x SINE Alu 1 121 -192 346 282 0 68 chr3 69833292 69833409 -157691169 - MIR SINE MIR -132 130 22 209 285 105 78 chr3 69834032 69834241 -157690337 - MIR SINE MIR -30 232 3 198 71 0 0 chr3 69834254 69834282 -157690296 + (T)n Simple_repeat Simple_repeat 1 28 0 1863 117 0 12 chr3 69834282 69834538 -157690040 - AluSq SINE Alu -60 253 1 199 250 62 0 chr3 69834552 69834616 -157689962 + L2 LINE L2 3139 3206 -66 2027 190 68 17 chr3 69835020 69835430 -157689148 + MSTB1 LTR MaLR 2 432 0 1564 177 21 10 chr3 69835565 69835853 -157688725 + AluJb SINE Alu 1 291 -21 332 324 142 6 chr3 69836021 69836197 -157688381 - MIR SINE MIR -44 218 19 771 259 75 0 chr3 69836376 69836550 -157688028 + MER5A DNA MER1_type 2 188 -1 411 219 49 0 chr3 69837569 69837651 -157686927 + Tigger3b DNA MER2_type 2 87 -1144 2746 125 37 31 chr3 69837684 69838141 -157686437 + Tigger3b DNA MER2_type 274 736 -2292 1830 149 7 26 chr3 69838141 69838483 -157686095 + AluSx SINE Alu 1 312 0 2746 125 37 31 chr3 69838483 69838536 -157686042 + Tigger3b DNA MER2_type 736 787 -444 449 219 0 10 chr3 69838536 69838632 -157685946 - FLAM_A SINE Alu -1 141 47 2418 154 100 2 chr3 69838636 69839057 -157685521 + Tigger3b DNA MER2_type 770 1231 0 8016 142 29 23 chr3 69839295 69840587 -157683991 + HSMAR2 DNA Mariner 3 1302 0 275 237 44 0 chr3 69840621 69840735 -157683843 + (TA)n Simple_repeat Simple_repeat 1 119 0 479 268 176 25 chr3 69840864 69841148 -157683430 + MER102a DNA MER1_type 1 327 -3 708 259 85 22 chr3 69841790 69842014 -157682564 + MIR SINE MIR 15 252 -10 422 294 199 0 chr3 69842516 69842717 -157681861 - MIR SINE MIR -19 243 3 1583 179 31 10 chr3 69843767 69844057 -157680521 + L1MB5 LINE L1 5871 6166 -8 835 284 158 12 chr3 69844474 69844879 -157679699 - LTR16B LTR ERVL 0 464 1 2428 186 23 6 chr3 69844888 69845410 -157679168 + LTR27 LTR ERV1 3 501 0 544 254 41 6 chr3 69848813 69848982 -157675596 + LTR33 LTR ERVL 341 515 -6 296 308 84 0 chr3 69850001 69850108 -157674470 + L2 LINE L2 3189 3304 -9 2551 139 62 24 chr3 69850649 69851186 -157673392 + MER39B LTR ERV1 1 630 -23 1163 153 124 5 chr3 69851206 69851508 -157673070 + MER51A LTR ERV1 107 634 0 272 315 99 95 chr3 69851712 69851985 -157672593 + L2 LINE L2 2992 3265 -7 3993 163 2 11 chr3 69852298 69852938 -157671640 + LTR27 LTR ERV1 3 636 0 641 200 40 0 chr3 69852947 69853072 -157671506 + MER20B DNA MER1_type 40 169 -50 319 288 62 20 chr3 69853144 69853290 -157671288 + MIR SINE MIR 108 259 -3 192 40 0 0 chr3 69853927 69853952 -157670626 + (GGGTG)n Simple_repeat Simple_repeat 2 26 0 261 0 0 0 chr3 69854319 69854348 -157670230 + (T)n Simple_repeat Simple_repeat 1 29 0 33 0 0 0 chr3 69854770 69854803 -157669775 + AT_rich Low_complexity Low_complexity 1 33 0 1824 154 0 8 chr3 69854803 69855070 -157669508 - AluSx SINE Alu -47 265 1 465 309 58 16 chr3 69856199 69856390 -157668188 + MIR SINE MIR 5 203 -59 715 205 0 8 chr3 69859344 69859461 -157665117 + FLAM_A SINE Alu 4 119 -14 1980 146 42 65 chr3 69859948 69860332 -157664246 + THE1C LTR MaLR 1 375 0 180 125 0 0 chr3 69860572 69860604 -157663974 + (GGGAGA)n Simple_repeat Simple_repeat 6 37 0 210 71 0 0 chr3 69860897 69860925 -157663653 + (TG)n Simple_repeat Simple_repeat 1 28 0 588 277 27 88 chr3 69861070 69861366 -157663212 - L2 LINE L2 0 3313 3036 933 200 17 11 chr3 69861392 69861572 -157663006 - MER5A DNA MER1_type -8 181 1 578 280 39 22 chr3 69862180 69862362 -157662216 - MER5A DNA MER1_type -2 187 3 263 323 153 32 chr3 69862434 69862623 -157661955 - MIR SINE MIR -17 245 34 405 283 46 40 chr3 69862923 69863075 -157661503 + MIR SINE MIR 1 153 -109 266 211 53 18 chr3 69863090 69863204 -157661374 + (TATAA)n Simple_repeat Simple_repeat 5 122 0 319 264 108 85 chr3 69863325 69863600 -157660978 + L1MC/D LINE L1 5354 5636 -587 1371 203 31 22 chr3 69863632 69863952 -157660626 - MER58B DNA MER1_type -6 335 13 286 272 63 44 chr3 69863961 69864041 -157660537 + L1MC/D LINE L1 5644 5721 -2087 2414 59 0 10 chr3 69864041 69864348 -157660230 + AluY SINE Alu 1 304 -7 286 272 63 44 chr3 69864348 69864425 -157660153 + L1MC/D LINE L1 5721 5804 -2004 259 164 16 0 chr3 69865610 69865671 -157658907 - LTR66 LTR ERVL -171 439 378 207 0 0 0 chr3 69865774 69865797 -157658781 + (T)n Simple_repeat Simple_repeat 1 23 0 283 148 74 0 chr3 69865929 69865983 -157658595 + Alu SINE Alu 236 293 -9 459 291 112 41 chr3 69866289 69866485 -157658093 + MIR SINE MIR 1 210 -52 243 280 97 0 chr3 69866965 69867058 -157657520 + MIR SINE MIR 50 151 -111 577 264 132 7 chr3 69867393 69867688 -157656890 - L1MC4a LINE L1 -1877 5931 5600 216 333 89 15 chr3 69869097 69869232 -157655346 - L2 LINE L2 -666 2648 2504 309 350 32 6 chr3 69869923 69870080 -157654498 + L2 LINE L2 2647 2807 -507 486 248 38 6 chr3 69870086 69870243 -157654335 - MER20B DNA MER1_type -4 779 618 259 289 111 11 chr3 69870429 69870519 -157654059 + MLT1L LTR MaLR 426 524 -91 594 228 112 80 chr3 69871265 69871489 -157653089 - MIR SINE MIR -30 232 2 641 147 46 0 chr3 69872659 69872768 -157651810 + L1PA15 LINE L1 6051 6164 -1 702 267 134 5 chr3 69873285 69873487 -157651091 + MIR SINE MIR 13 240 -22 2347 192 24 117 chr3 69874056 69874768 -157649810 + MLT1E1 LTR MaLR 3 648 -6 219 333 112 53 chr3 69874778 69875208 -157649370 + L2 LINE L2 2063 2517 -797 356 284 87 0 chr3 69875386 69875513 -157649065 + MIR SINE MIR 53 190 -72 280 330 70 0 chr3 69876964 69877064 -157647514 - MIR SINE MIR -56 206 100 2007 156 3 0 chr3 69878150 69878451 -157646127 + AluSx SINE Alu 1 302 -10 24 32 0 0 chr3 69878763 69878794 -157645784 + AT_rich Low_complexity Low_complexity 1 31 0 1988 147 3 0 chr3 69879202 69879488 -157645090 - AluJb SINE Alu -20 292 6 195 333 0 43 chr3 69879509 69879578 -157645000 + L2 LINE L2 3245 3310 -3 3639 201 44 26 chr3 69880144 69881309 -157643269 - L1MB1 LINE L1 0 6168 4975 2919 78 2 37 chr3 69882879 69883261 -157641317 - L1PA13 LINE L1 -10 6153 5786 2124 137 0 22 chr3 69883261 69883574 -157641004 - AluSx SINE Alu -6 306 1 2919 78 2 37 chr3 69883574 69883624 -157640954 - L1PA13 LINE L1 -377 5786 5736 366 232 24 0 chr3 69883644 69883726 -157640852 - L2 LINE L2 -9 3304 3221 202 179 0 26 chr3 69883902 69883941 -157640637 - L2 LINE L2 -84 3229 3192 380 320 39 17 chr3 69884737 69884915 -157639663 - MIR SINE MIR -15 247 66 3798 110 32 5 chr3 69885269 69885853 -157638725 + LTR43 LTR ERV1 1 600 -2 359 171 190 57 chr3 69887679 69887837 -157636741 - MIR SINE MIR 0 262 84 195 114 0 0 chr3 69888936 69888971 -157635607 + (TA)n Simple_repeat Simple_repeat 1 35 0 365 278 0 0 chr3 69888971 69889061 -157635517 - L1MC4 LINE L1 -1339 6703 6614 1769 159 0 31 chr3 69889091 69889412 -157635166 - AluJo SINE Alu -1 311 1 11901 38 1 1 chr3 69889597 69891041 -157633537 - L1PA4 LINE L1 -1065 5081 3638 7335 41 1 2 chr3 69891041 69892108 -157632470 + L1PA4 LINE L1 5087 6152 -3 724 289 28 0 chr3 69892370 69892550 -157632028 - MER5A DNA MER1_type -3 186 2 1555 201 11 4 chr3 69893838 69894112 -157630466 + AluJo SINE Alu 8 283 -29 315 0 0 0 chr3 69894116 69894151 -157630427 + (TAA)n Simple_repeat Simple_repeat 2 36 0 593 286 79 18 chr3 69895682 69895909 -157628669 - MIR SINE MIR -20 242 2 205 307 88 20 chr3 69896515 69896635 -157627943 + MIR SINE MIR 55 181 -62 198 0 0 0 chr3 69896681 69896703 -157627875 + (CA)n Simple_repeat Simple_repeat 1 22 0 3297 136 25 58 chr3 69896707 69896983 -157627595 - MER7C DNA MER2_type -2426 602 318 2213 99 7 0 chr3 69896983 69897275 -157627303 + AluSc SINE Alu 6 299 -10 3297 136 25 58 chr3 69897275 69897607 -157626971 - MER7C DNA MER2_type -2710 318 14 248 196 18 0 chr3 69897608 69897664 -157626914 + (TA)n Simple_repeat Simple_repeat 1 57 0 22 35 0 0 chr3 69898395 69898424 -157626154 + AT_rich Low_complexity Low_complexity 1 29 0 248 277 32 43 chr3 69898447 69898541 -157626037 + MER92B LTR ERV1 22 114 -522 296 210 0 0 chr3 69898641 69898703 -157625875 + MER92C LTR ERV1 491 552 -2 365 269 65 54 chr3 69899497 69899683 -157624895 - MIR SINE MIR -7 255 68 311 299 163 14 chr3 69900873 69901020 -157623558 + MIR SINE MIR 86 254 -8 2288 107 0 0 chr3 69901636 69901935 -157622643 - AluY SINE Alu -12 299 1 371 253 68 20 chr3 69902004 69902150 -157622428 - MIR SINE MIR -20 242 90 22 56 0 0 chr3 69902294 69902330 -157622248 + AT_rich Low_complexity Low_complexity 1 36 0 7107 35 3 11 chr3 69904054 69905676 -157618902 + L1PA4 LINE L1 4547 6162 0 1575 194 0 17 chr3 69905856 69906149 -157618429 - AluJo SINE Alu -24 288 1 296 295 39 51 chr3 69906219 69906375 -157618203 + MER5A DNA MER1_type 36 189 0 247 296 104 9 chr3 69906472 69906587 -157617991 + MIR SINE MIR 41 166 -96 239 184 20 0 chr3 69906890 69906939 -157617639 - HsTC2 DNA Tc2 -1813 85 36 222 370 17 34 chr3 69909127 69909246 -157615332 - L2 LINE L2 -12 3260 3144 404 295 179 0 chr3 69909274 69909481 -157615097 - MIR SINE MIR -6 256 13 189 273 7 108 chr3 69910236 69910375 -157614203 - L3 LINE CR1 -614 963 839 418 250 144 44 chr3 69910833 69910993 -157613585 + MIR SINE MIR 86 261 -1 20791 151 39 22 chr3 69911311 69918893 -157605685 - L1MA3 LINE L1 -5 7719 5 814 164 3 0 chr3 69919098 69919251 -157605327 + L1PB4 LINE L1 6011 6165 -1 2298 77 0 3 chr3 69919451 69919738 -157604840 - AluY SINE Alu -13 298 13 2068 126 3 16 chr3 69920719 69921029 -157603549 + AluSx SINE Alu 1 306 -6 2230 101 3 0 chr3 69921710 69922006 -157602572 - AluSp SINE Alu -16 297 1 397 254 43 36 chr3 69922233 69922371 -157602207 - MIR SINE MIR -26 236 98 1438 165 36 0 chr3 69922779 69923027 -157601551 + Tigger4(Zombi) DNA MER2_type 1 257 -2474 242 344 14 8 chr3 69923164 69923307 -157601271 + MIR SINE MIR 16 159 -66 1536 257 115 21 chr3 69923465 69924040 -157600538 - MER92B LTR ERV1 -7 629 1 202 213 0 21 chr3 69924054 69924101 -157600477 + (TATG)n Simple_repeat Simple_repeat 3 48 0 218 222 0 0 chr3 69925108 69925153 -157599425 + (TAA)n Simple_repeat Simple_repeat 2 46 0 373 260 151 41 chr3 69925162 69925381 -157599197 - MIR SINE MIR 0 262 20 219 114 0 0 chr3 69925649 69925684 -157598894 + (ATG)n Simple_repeat Simple_repeat 3 37 0 1386 178 37 19 chr3 69926461 69926676 -157597902 + Tigger3(Golem) DNA MER2_type 1 223 -2806 2031 140 33 30 chr3 69926676 69927012 -157597566 + MER1B DNA MER1_type 1 337 0 1386 178 37 19 chr3 69927012 69927066 -157597512 + Tigger3(Golem) DNA MER2_type 223 275 -2754 1561 166 68 46 chr3 69927066 69927433 -157597145 - THE1C LTR MaLR 0 375 1 4567 116 5 48 chr3 69927433 69928189 -157596389 - THE1C-int LTR MaLR 0 1580 857 24171 117 12 9 chr3 69928198 69932881 -157591697 + L1PA8A LINE L1 1426 6152 -13 208 330 0 11 chr3 69934131 69934219 -157590359 - MIR SINE MIR -1 261 175 181 250 23 0 chr3 69935360 69935404 -157589174 - L2 LINE L2 -17 3255 3211 546 244 234 0 chr3 69937861 69938058 -157586520 - MIR SINE MIR -13 249 7 1929 100 8 4 chr3 69939622 69939881 -157584697 - AluSx SINE Alu -14 298 39 1208 192 31 25 chr3 69941168 69941454 -157583124 - L1MB5 LINE L1 -4 6170 5883 6237 104 15 16 chr3 69941457 69942430 -157582148 - L1MA2 LINE L1 0 6304 5333 451 348 121 14 chr3 69942706 69943308 -157581270 + L1ME3 LINE L1 4487 5179 -967 397 321 96 35 chr3 69943421 69944013 -157580565 + L1ME3 LINE L1 5259 5886 -276 932 185 49 10 chr3 69944187 69944392 -157580186 + MER20 DNA MER1_type 2 214 -5 1239 188 5 9 chr3 69945083 69945306 -157579272 - MER58A DNA MER1_type 0 224 3 22 0 0 0 chr3 69945536 69945558 -157579020 + AT_rich Low_complexity Low_complexity 1 22 0 452 275 118 90 chr3 69946476 69946561 -157578017 + L2 LINE L2 2794 2875 -438 2070 70 44 0 chr3 69946561 69946833 -157577745 - AluY SINE Alu -27 284 1 452 275 118 90 chr3 69946833 69947215 -157577363 + L2 LINE L2 2875 3294 -19 786 207 131 10 chr3 69947268 69947466 -157577112 + MER58A DNA MER1_type 3 224 0 2345 100 0 10 chr3 69947644 69947955 -157576623 + AluSx SINE Alu 1 308 -4 219 213 40 93 chr3 69948070 69948110 -157576468 + L2 LINE L2 3198 3234 -38 458 103 13 26 chr3 69948110 69948188 -157576390 - MADE1 DNA Mariner -3 77 1 219 213 40 93 chr3 69948188 69948222 -157576356 + L2 LINE L2 3234 3268 -4 182 287 20 129 chr3 69948739 69948840 -157575738 + MER5A DNA MER1_type 72 161 -28 255 290 0 0 chr3 69949765 69949827 -157574751 - L2 LINE L2 -1 3312 3251 423 177 31 3 chr3 69949880 69949992 -157574586 + L1MB8 LINE L1 6068 6178 0 428 294 40 8 chr3 69950203 69950329 -157574249 + MIR SINE MIR 12 141 -121 277 240 126 60 chr3 69950721 69951038 -157573540 + L1ME4a LINE L1 5707 6044 -77 2299 69 7 3 chr3 69951313 69951604 -157572974 + AluSc SINE Alu 1 292 -17 22 0 0 0 chr3 69952008 69952030 -157572548 + AT_rich Low_complexity Low_complexity 1 22 0 231 403 14 7 chr3 69952412 69952551 -157572027 + MIR SINE MIR 5 144 -118 190 178 89 22 chr3 69952763 69952808 -157571770 + MIR3 SINE MIR 151 198 -10 611 280 42 63 chr3 69953684 69953970 -157570608 + MLT1I LTR MaLR 21 300 -109 291 286 71 29 chr3 69953944 69954084 -157570494 + MLT1I LTR MaLR 404 549 0 * 558 318 77 66 chr3 69954303 69954642 -157569936 - L2 LINE L2 -189 3083 2749 219 69 0 0 chr3 69954642 69954671 -157569907 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 183 80 0 0 chr3 69954674 69954699 -157569879 + (CAA)n Simple_repeat Simple_repeat 3 27 0 3482 100 2 6 chr3 69954699 69955189 -157569389 - L1PA13 LINE L1 -11 6152 5665 558 318 77 66 chr3 69955189 69955451 -157569127 - L2 LINE L2 -523 2749 2469 306 343 37 8 chr3 69956554 69956688 -157567890 - MIR SINE MIR -124 138 1 212 321 95 0 chr3 69957809 69957893 -157566685 + MIR SINE MIR 44 135 -73 22 0 0 0 chr3 69957943 69957965 -157566613 + AT_rich Low_complexity Low_complexity 1 22 0 241 294 117 25 chr3 69958010 69958173 -157566405 - L2 LINE L2 -15 3298 3121 576 330 112 0 chr3 69958231 69958464 -157566114 + MIR SINE MIR 4 262 0 1171 243 115 51 chr3 69958716 69959347 -157565231 + L1MC4 LINE L1 6499 7149 -659 658 297 70 60 chr3 69959723 69960470 -157564108 + L1MC4 LINE L1 7280 8033 -9 798 70 43 0 chr3 69960763 69960878 -157563700 + L1PA10 LINE L1 5863 5982 -186 1880 211 129 75 chr3 69960878 69961585 -157562993 + LTR1B LTR ERV1 1 745 -81 1090 122 37 16 chr3 69961657 69961845 -157562733 + L1PA10 LINE L1 5977 6168 0 25 0 0 0 chr3 69962749 69962774 -157561804 + AT_rich Low_complexity Low_complexity 1 25 0 619 308 47 8 chr3 69962884 69963118 -157561460 - MIR SINE MIR -18 244 2 617 198 111 1 chr3 69963280 69963630 -157560948 - Charlie1 DNA MER1_type -10 2751 2346 769 264 51 5 chr3 69963684 69963881 -157560697 + MIR SINE MIR 15 220 -42 1919 113 28 11 chr3 69965910 69966192 -157558386 + AluSx SINE Alu 1 287 -25 232 286 24 0 chr3 69966298 69966382 -157558196 + L1ME4a LINE L1 5960 6045 -76 974 158 81 36 chr3 69966570 69966817 -157557761 - Tigger2 DNA MER2_type -10 2708 2451 3173 146 93 1 chr3 69966893 69967539 -157557039 - Tigger2 DNA MER2_type -2013 705 1 2423 66 0 0 chr3 69968441 69968730 -157555848 - AluY SINE Alu -22 289 1 1937 147 3 13 chr3 69969294 69969601 -157554977 - AluSx SINE Alu -8 304 1 2044 127 44 41 chr3 69970051 69970414 -157554164 - THE1B LTR MaLR 0 364 1 1018 268 146 41 chr3 69971265 69971394 -157553184 - L2 LINE L2 -4 3309 3195 423 0 0 0 chr3 69971394 69971441 -157553137 + (CA)n Simple_repeat Simple_repeat 2 48 0 1018 268 146 41 chr3 69971441 69971722 -157552856 - L2 LINE L2 -118 3195 2856 877 236 195 26 chr3 69971731 69972158 -157552420 - MLT1D LTR MaLR -6 620 1 507 232 26 103 chr3 69972158 69972352 -157552226 - L2 LINE L2 -456 2858 2680 1945 166 14 0 chr3 69973017 69973313 -157551265 + AluJb SINE Alu 1 300 -12 320 43 22 0 chr3 69973317 69973363 -157551215 + (CA)n Simple_repeat Simple_repeat 2 48 0 1567 196 21 11 chr3 69975177 69975462 -157549116 - AluJo SINE Alu -21 291 4 33 73 0 0 chr3 69975502 69975570 -157549008 + AT_rich Low_complexity Low_complexity 1 68 0 315 71 0 0 chr3 69975613 69975655 -157548923 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 2773 10 0 0 chr3 69978470 69978772 -157545806 - AluY SINE Alu -9 302 1 2857 6 0 16 chr3 69981336 69981658 -157542920 + AluYb8 SINE Alu 1 317 -1 22 0 0 0 chr3 69981904 69981926 -157542652 + AT_rich Low_complexity Low_complexity 1 22 0 1334 177 0 0 chr3 69982228 69982443 -157542135 + AluSg/x SINE Alu 91 305 -7 27 73 0 0 chr3 69983529 69983584 -157540994 + AT_rich Low_complexity Low_complexity 1 55 0 3670 197 56 55 chr3 69985160 69985331 -157539247 + MER21B LTR ERV1 1 170 -693 8329 47 3 5 chr3 69985331 69987154 -157537424 + L1PA5 LINE L1 4324 6146 -8 3670 197 56 55 chr3 69987154 69987165 -157537413 + MER21B LTR ERV1 170 179 -684 231 61 0 0 chr3 69987165 69987198 -157537380 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 3670 197 56 55 chr3 69987198 69987873 -157536705 + MER21B LTR ERV1 179 860 -3 815 211 12 0 chr3 69988097 69988263 -157536315 + MER5A DNA MER1_type 1 168 -21 459 342 158 22 chr3 69988272 69988594 -157535984 - L3 LINE CR1 -51 1526 1161 577 304 101 27 chr3 69988694 69989030 -157535548 + MLT1K LTR MaLR 116 476 -112 298 251 0 30 chr3 69989580 69989680 -157534898 - L1M4 LINE L1 -609 5575 5479 304 290 55 35 chr3 69989943 69990198 -157534380 - L1M4 LINE L1 -975 5171 4912 678 227 188 0 chr3 69990318 69990494 -157534084 - MER58A DNA MER1_type -15 209 1 239 318 67 59 chr3 69990767 69990947 -157533631 - L1M4 LINE L1 -1717 4429 4252 2016 104 6 68 chr3 69990947 69991273 -157533305 - AluY SINE Alu -3 308 3 239 318 67 59 chr3 69991273 69991775 -157532803 - L1M4 LINE L1 -1894 4252 3741 2226 123 3 0 chr3 69991814 69992116 -157532462 - AluSx SINE Alu -9 303 1 272 321 73 16 chr3 69992497 69993048 -157531530 - L1M4 LINE L1 -2915 3231 2650 246 258 72 10 chr3 69993934 69994031 -157530547 + MIR SINE MIR 56 158 -104 700 95 69 9 chr3 69995224 69995340 -157529238 + MLT2A2 LTR ERVL 76 198 -255 216 0 0 0 chr3 69995349 69995373 -157529205 + (GA)n Simple_repeat Simple_repeat 1 24 0 533 233 170 13 chr3 69995820 69995979 -157528599 + MER5A DNA MER1_type 4 187 -2 199 311 189 0 chr3 69996160 69996234 -157528344 + MIR SINE MIR 84 171 -91 255 235 98 29 chr3 69996519 69996621 -157527957 - MIR SINE MIR 0 262 154 376 320 35 40 chr3 69996642 69996842 -157527736 - L1ME LINE L1 -442 5679 5481 208 195 65 154 chr3 69997297 69997420 -157527158 + L3 LINE CR1 553 664 -913 557 311 130 62 chr3 69997949 69998419 -157526159 - L2 LINE L2 -4 3309 2808 850 214 35 117 chr3 69998552 69998647 -157525931 + AluJb SINE Alu 2 103 -199 240 35 0 0 chr3 69998647 69998676 -157525902 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 850 214 35 117 chr3 69998676 69998897 -157525681 + AluJb SINE Alu 103 292 -10 3045 179 31 8 chr3 69998965 69999618 -157524960 - L1MB7 LINE L1 -21 6163 5496 337 219 8 164 chr3 69999618 69999746 -157524832 - MER5B DNA MER1_type -69 109 2 2527 175 39 4 chr3 69999967 70000480 -157524098 + MER6A DNA MER2_type 71 601 -4 255 113 42 0 chr3 70000570 70000641 -157523937 + (TA)n Simple_repeat Simple_repeat 2 75 0 357 24 0 0 chr3 70000641 70000683 -157523895 + (GA)n Simple_repeat Simple_repeat 2 43 0 2170 109 3 20 chr3 70000926 70001230 -157523348 + AluSq SINE Alu 1 299 -14 21 0 0 0 chr3 70001791 70001812 -157522766 + AT_rich Low_complexity Low_complexity 1 21 0 282 318 188 0 chr3 70003585 70003739 -157520839 - MIR SINE MIR -6 256 74 646 263 73 10 chr3 70004173 70004378 -157520200 - MIR SINE MIR 0 262 45 231 327 146 18 chr3 70005793 70005958 -157518620 - MER117 DNA MER1_type 0 197 12 405 0 0 0 chr3 70007926 70007971 -157516607 + (CA)n Simple_repeat Simple_repeat 2 46 0 213 341 0 34 chr3 70008093 70008181 -157516397 + L2 LINE L2 3229 3313 0 367 137 27 0 chr3 70009020 70009093 -157515485 + GA-rich Low_complexity Low_complexity 2 76 0 331 326 21 0 chr3 70009195 70009290 -157515288 - L2 LINE L2 -18 3254 3158 355 302 148 54 chr3 70009323 70009601 -157514977 - L2 LINE L2 -20 3293 2990 489 220 30 0 chr3 70009740 70009840 -157514738 + MER5A DNA MER1_type 10 112 -77 523 334 81 42 chr3 70010131 70010439 -157514139 - L2 LINE L2 -534 2780 2461 311 203 0 0 chr3 70010450 70010509 -157514069 + Tigger1 DNA MER2_type 1 59 -2359 * 11545 124 48 2 chr3 70010507 70012434 -157512144 + Tigger1 DNA MER2_type 402 2418 0 4246 39 7 0 chr3 70012823 70013387 -157511191 - L1P LINE L1 -2930 3216 2649 13284 32 2 6 chr3 70013387 70015749 -157508829 + L1PA4 LINE L1 3791 6154 -1 357 325 106 0 chr3 70016668 70016791 -157507787 + MIR SINE MIR 2 137 -125 366 23 0 0 chr3 70016852 70016895 -157507683 + (TA)n Simple_repeat Simple_repeat 1 43 0 846 112 0 9 chr3 70016895 70017011 -157507567 - AluSc SINE Alu -14 295 181 606 132 0 97 chr3 70017020 70017164 -157507414 - L1MB8 LINE L1 -10 6168 6039 624 239 7 7 chr3 70017164 70017302 -157507276 + MER5B DNA MER1_type 38 175 -3 186 71 0 0 chr3 70017871 70017899 -157506679 + (A)n Simple_repeat Simple_repeat 1 28 0 2299 101 0 25 chr3 70018189 70018507 -157506071 + AluSx SINE Alu 1 310 -2 213 132 0 0 chr3 70019393 70019431 -157505147 + (CA)n Simple_repeat Simple_repeat 1 38 0 213 178 0 0 chr3 70019667 70019712 -157504866 + (CA)n Simple_repeat Simple_repeat 1 45 0 496 307 57 16 chr3 70020063 70020255 -157504323 - MIR SINE MIR -48 214 15 2190 131 0 0 chr3 70020961 70021259 -157503319 - AluSx SINE Alu -12 300 3 199 262 43 140 chr3 70021977 70022141 -157502437 + L2 LINE L2 3042 3189 -83 309 338 118 17 chr3 70022946 70023233 -157501345 - LTR33 LTR ERVL -84 437 122 355 276 68 57 chr3 70023308 70023500 -157501078 + HAL1 LINE L1 1022 1215 -1292 321 26 0 0 chr3 70024097 70024135 -157500443 + (CA)n Simple_repeat Simple_repeat 1 38 0 2099 113 0 7 chr3 70025312 70025595 -157498983 + AluSc SINE Alu 2 282 -27 288 0 0 0 chr3 70025595 70025627 -157498951 + (CA)n Simple_repeat Simple_repeat 2 33 0 1633 160 58 47 chr3 70026251 70026595 -157497983 - MER7A DNA MER2_type 0 346 1 246 229 0 0 chr3 70026721 70026791 -157497787 + (TA)n Simple_repeat Simple_repeat 2 71 0 191 370 12 12 chr3 70027795 70027876 -157496702 + MIR SINE MIR 27 107 -101 279 279 0 0 chr3 70027971 70028057 -157496521 + MER117 DNA MER1_type 106 191 -6 370 225 261 14 chr3 70028079 70028217 -157496361 - MER5A DNA MER1_type -14 175 4 458 327 115 9 chr3 70028319 70028536 -157496042 - MIR SINE MIR -22 240 1 352 248 116 8 chr3 70028549 70028670 -157495908 - MIR SINE MIR -9 253 120 23 33 0 0 chr3 70028808 70028838 -157495740 + AT_rich Low_complexity Low_complexity 1 30 0 759 186 33 66 chr3 70029212 70029395 -157495183 - MER5B DNA MER1_type 0 178 2 541 335 129 9 chr3 70029923 70030147 -157494431 - MIR SINE MIR 0 262 12 1505 209 3 63 chr3 70030504 70030867 -157493711 - MER58B DNA MER1_type 0 341 1 584 221 46 83 chr3 70031275 70031492 -157493086 - MER63A DNA MER1_type 0 210 2 320 256 0 0 chr3 70033053 70033131 -157491447 + MER103 DNA DNA 68 145 -21 3515 133 0 5 chr3 70033591 70034162 -157490416 + L1PA14 LINE L1 5591 6158 -3 21 0 0 0 chr3 70034186 70034207 -157490371 + AT_rich Low_complexity Low_complexity 1 21 0 2925 105 7 11 chr3 70034242 70034681 -157489897 + L1PA8 LINE L1 5731 6167 -5 536 298 71 13 chr3 70034870 70035095 -157489483 - MIR SINE MIR -1 261 24 189 250 19 19 chr3 70035563 70035667 -157488911 + GA-rich Low_complexity Low_complexity 3 106 0 268 311 76 0 chr3 70035677 70035796 -157488782 + MER5A DNA MER1_type 36 163 -26 962 186 0 18 chr3 70035796 70035963 -157488615 - AluJb SINE Alu -10 302 139 804 304 90 22 chr3 70036505 70036949 -157487629 - L1MC4a LINE L1 -1873 5935 5462 21 71 0 0 chr3 70037271 70037313 -157487265 + AT_rich Low_complexity Low_complexity 1 42 0 227 322 182 45 chr3 70037852 70038116 -157486462 - L2 LINE L2 0 3272 2973 244 109 59 20 chr3 70039308 70039409 -157485169 + (TA)n Simple_repeat Simple_repeat 1 105 0 614 312 98 11 chr3 70039547 70039903 -157484675 - MLT1J LTR MaLR -44 467 81 1095 200 54 57 chr3 70041465 70041902 -157482676 + MER89 LTR ERV1 1 536 -23 213 278 19 0 chr3 70042033 70042087 -157482491 + L2 LINE L2 1502 1556 -1758 255 219 0 0 chr3 70042625 70042689 -157481889 + L1MC4 LINE L1 6640 6703 -1339 247 281 0 0 chr3 70042643 70042732 -157481846 - L1MC4 LINE L1 -1339 6703 6615 * 260 222 14 0 chr3 70042746 70042818 -157481760 + (TATG)n Simple_repeat Simple_repeat 2 74 0 1333 184 106 4 chr3 70042823 70043079 -157481499 - AluJo SINE Alu -30 282 1 269 312 54 21 chr3 70043796 70043889 -157480689 + L2 LINE L2 3146 3241 -31 220 328 0 31 chr3 70046433 70046497 -157478081 - MIR SINE MIR -80 128 67 913 184 60 60 chr3 70046996 70047213 -157477365 - MER20 DNA MER1_type 0 219 3 416 290 24 65 chr3 70048028 70048197 -157476381 - MER91A DNA MER1_type -34 162 1 571 266 112 12 chr3 70048426 70048595 -157475983 - MER5A DNA MER1_type 0 189 4 3356 228 55 37 chr3 70049207 70049856 -157474722 + HAL1b LINE L1 117 800 -548 1703 205 51 11 chr3 70049856 70050207 -157474371 + MLT1A1 LTR MaLR 1 365 0 3356 228 55 37 chr3 70050207 70050765 -157473813 + HAL1b LINE L1 800 1346 -2 321 293 20 10 chr3 70051029 70051128 -157473450 - MIR SINE MIR -3 259 160 296 282 0 0 chr3 70051154 70051225 -157473353 - MIR SINE MIR 0 262 192 349 193 0 118 chr3 70051987 70052106 -157472472 - MIR SINE MIR -71 191 87 186 329 39 106 chr3 70052765 70052972 -157471606 - L2 LINE L2 -50 3222 3030 2135 125 3 3 chr3 70053406 70053702 -157470876 - AluSx SINE Alu -16 296 1 265 248 30 75 chr3 70053987 70054120 -157470458 + LTR67 LTR ERVL 425 551 -6 465 298 111 17 chr3 70054120 70054301 -157470277 - L3 LINE CR1 -114 1463 1266 335 143 0 29 chr3 70054923 70054993 -157469585 + (CATATA)n Simple_repeat Simple_repeat 4 71 0 268 236 28 0 chr3 70055314 70055386 -157469192 + CT-rich Low_complexity Low_complexity 2 75 0 305 253 67 28 chr3 70056012 70056190 -157468388 - MER113 DNA MER1_type? -293 228 44 2227 119 0 3 chr3 70056473 70056784 -157467794 - AluSg SINE Alu 0 310 1 449 276 83 26 chr3 70058018 70058210 -157466368 + MIR SINE MIR 9 211 -51 281 300 12 12 chr3 70058309 70058389 -157466189 - L2 LINE L2 0 3313 3234 1056 65 0 0 chr3 70058525 70058663 -157465915 - MER85 DNA T2_type -1 138 1 194 339 143 9 chr3 70059365 70059477 -157465101 + MIR3 SINE MIR 70 196 -12 463 310 16 11 chr3 70059926 70060113 -157464465 - MER117 DNA MER1_type -9 188 1 231 295 19 45 chr3 70060712 70060868 -157463710 + CT-rich Low_complexity Low_complexity 2 153 0 1756 138 46 14 chr3 70061489 70061771 -157462807 + AluSq SINE Alu 1 291 -22 2279 88 0 0 chr3 70061978 70062263 -157462315 - AluSc SINE Alu -2 307 23 332 391 14 7 chr3 70062771 70062909 -157461669 - L2 LINE L2 0 3272 3134 303 205 51 0 chr3 70062993 70063071 -157461507 + MLT2E LTR ERVL 39 120 -508 24 0 0 0 chr3 70063582 70063606 -157460972 + AT_rich Low_complexity Low_complexity 1 24 0 1129 233 42 9 chr3 70063620 70063955 -157460623 + L1MC2 LINE L1 4264 4609 -1537 374 121 212 0 chr3 70064962 70065028 -157459550 + MADE1 DNA Mariner 1 80 0 1489 119 18 0 chr3 70065502 70065729 -157458849 - L1PA11 LINE L1 -77 6097 5867 1607 198 61 60 chr3 70065758 70066259 -157458319 + MLT1D LTR MaLR 1 490 -15 4898 195 43 21 chr3 70066481 70068132 -157456446 + L1MC2 LINE L1 4596 6343 -1 1905 155 0 7 chr3 70068291 70068594 -157455984 - AluSg SINE Alu -9 301 1 184 328 0 0 chr3 70068787 70068851 -157455727 + L2 LINE L2 3236 3299 -14 686 147 16 16 chr3 70068901 70069030 -157455548 + FRAM SINE Alu 32 160 -16 371 301 37 37 chr3 70069182 70069318 -157455260 - MIR SINE MIR -109 153 18 281 299 0 26 chr3 70070212 70070289 -157454289 + L2 LINE L2 3221 3295 -18 343 365 22 7 chr3 70070493 70070631 -157453947 - MIR SINE MIR -46 162 22 7668 208 84 26 chr3 70071857 70072038 -157452540 - L1MB8 LINE L1 -263 6726 6557 1893 160 7 0 chr3 70072038 70072352 -157452226 - AluJb SINE Alu 0 316 1 7668 208 84 26 chr3 70072352 70074654 -157449924 - L1MB8 LINE L1 -432 6557 4040 2013 103 0 64 chr3 70074654 70074965 -157449613 - AluSg SINE Alu -19 291 1 7668 208 84 26 chr3 70074965 70075552 -157449026 - L1MB8 LINE L1 -2949 4040 3489 4456 227 68 19 chr3 70075560 70076641 -157447937 - L1MB8 LINE L1 -5723 1136 3 301 203 56 0 chr3 70076641 70076712 -157447866 + MLT1I LTR MaLR 343 401 -8 358 239 0 97 chr3 70076999 70077112 -157447466 + L2 LINE L2 3206 3307 -6 189 0 0 0 chr3 70078078 70078099 -157446479 + (A)n Simple_repeat Simple_repeat 1 21 0 581 329 84 9 chr3 70080345 70080570 -157444008 + MIR SINE MIR 13 254 -8 300 210 29 45 chr3 70081145 70081297 -157443281 + MIR SINE MIR 1 145 -63 768 170 33 7 chr3 70082024 70082177 -157442401 - FAM SINE Alu -18 157 1 246 247 84 36 chr3 70082497 70082663 -157441915 + L2 LINE L2 1908 2081 -1233 216 291 73 10 chr3 70082631 70082775 -157441803 + L2 LINE L2 3094 3302 -11 * 324 281 115 0 chr3 70082783 70082879 -157441699 - MIR SINE MIR -106 156 50 404 214 225 60 chr3 70082943 70083125 -157441453 - MER58C DNA MER1_type -3 212 1 2238 94 0 24 chr3 70083216 70083514 -157441064 - AluSc SINE Alu -18 291 1 304 392 69 0 chr3 70084495 70084597 -157439981 + L2 LINE L2 3162 3270 -2 256 258 0 0 chr3 70084776 70084834 -157439744 - MIR SINE MIR -43 165 107 1135 262 40 61 chr3 70084950 70085544 -157439034 + L1MC4 LINE L1 6686 7225 -736 554 249 40 35 chr3 70085619 70085792 -157438786 + MER5B DNA MER1_type 1 174 -4 328 294 15 122 chr3 70086046 70086389 -157438189 + L1MEc LINE L1 15 320 -6076 1571 246 72 14 chr3 70086939 70087442 -157437136 + L1ME1 LINE L1 5629 6160 -6 463 257 80 43 chr3 70087478 70087754 -157436824 + L1ME3A LINE L1 5883 6168 -2 340 289 129 8 chr3 70087874 70088046 -157436532 + L1MC5 LINE L1 7610 7826 -135 2256 129 0 0 chr3 70088046 70088355 -157436223 + AluSq SINE Alu 1 309 -4 340 289 129 8 chr3 70088355 70088445 -157436133 + L1MC5 LINE L1 7826 7904 -57 746 280 101 59 chr3 70088924 70089381 -157435197 - LTR33 LTR ERVL -1 520 45 601 296 56 72 chr3 70089864 70090296 -157434282 + L2 LINE L2 2848 3272 0 1208 178 12 4 chr3 70090408 70090661 -157433917 + L1 LINE L1 4497 4751 -1395 188 197 239 42 chr3 70094102 70094173 -157430405 - L3 LINE CR1 -450 1127 1043 271 285 122 24 chr3 70094556 70094679 -157429899 - MIR3 SINE MIR -64 144 10 201 217 22 0 chr3 70096135 70096181 -157428397 + (TA)n Simple_repeat Simple_repeat 2 48 0 266 271 24 91 chr3 70096183 70096271 -157428307 + L1ME4a LINE L1 5615 5707 -414 2312 74 0 16 chr3 70096271 70096580 -157427998 + AluY SINE Alu 1 304 -7 266 271 24 91 chr3 70096580 70096745 -157427833 + L1ME4a LINE L1 5707 5824 -297 331 286 65 24 chr3 70096792 70096960 -157427618 + L1ME4a LINE L1 5947 6121 0 185 236 109 0 chr3 70097490 70097545 -157427033 - MIR3 SINE MIR -35 173 113 527 213 121 29 chr3 70098144 70098417 -157426161 - L1ME4a LINE L1 -222 6135 5838 26 0 0 0 chr3 70098538 70098564 -157426014 + AT_rich Low_complexity Low_complexity 1 26 0 32 67 0 0 chr3 70098696 70098756 -157425822 + AT_rich Low_complexity Low_complexity 1 60 0 1881 119 7 48 chr3 70099470 70099607 -157424971 + AluSq SINE Alu 1 142 -185 2320 74 30 0 chr3 70099607 70099904 -157424674 + AluY SINE Alu 1 306 -5 1881 119 7 48 chr3 70099904 70100105 -157424473 + AluSq SINE Alu 142 327 0 694 292 74 47 chr3 70100166 70100762 -157423816 + HAL1 LINE L1 757 1368 -1139 733 240 196 46 chr3 70100777 70101005 -157423573 + HAL1 LINE L1 1427 1619 -888 2478 138 36 24 chr3 70101005 70101426 -157423152 + MSTB LTR MaLR 1 426 0 733 240 196 46 chr3 70101426 70101610 -157422968 + HAL1 LINE L1 1619 1901 -606 331 230 61 85 chr3 70101966 70102131 -157422447 + HAL1b LINE L1 751 911 -437 349 241 85 65 chr3 70102271 70102470 -157422108 + HAL1 LINE L1 2300 2502 -5 267 295 130 50 chr3 70104340 70104540 -157420038 + MER20 DNA MER1_type 4 219 0 851 206 17 84 chr3 70104746 70104984 -157419594 + MER31B LTR ERV1 1 222 -244 320 154 0 0 chr3 70105015 70105067 -157419511 - L1ME4a LINE L1 -716 5762 5711 2066 130 35 3 chr3 70105072 70105442 -157419136 - L1MB3 LINE L1 -2 6181 5800 12415 144 40 27 chr3 70105442 70107776 -157416802 - L1M4c LINE L1 -4017 2367 3 1094 157 11 79 chr3 70107762 70108198 -157416380 - L1ME4a LINE L1 -753 5725 5318 * 6098 159 10 6 chr3 70108217 70109953 -157414625 - L1PB1 LINE L1 -1 6150 4405 4007 233 112 65 chr3 70109950 70110312 -157414266 - L1ME4a LINE L1 -1048 5334 4991 * 468 0 0 0 chr3 70110312 70110364 -157414214 + (TA)n Simple_repeat Simple_repeat 2 53 0 4007 233 112 65 chr3 70110364 70110626 -157413952 - L1ME4a LINE L1 -1391 4991 4743 1940 97 67 4 chr3 70110626 70110921 -157413657 - AluSq SINE Alu 0 312 1 4007 233 112 65 chr3 70110921 70112261 -157412317 - L1ME4a LINE L1 -1639 4743 3274 3746 217 86 8 chr3 70112264 70113871 -157410707 - L1MDb LINE L1 -3239 3167 1329 970 167 0 25 chr3 70113874 70114036 -157410542 - AluJb SINE Alu -15 297 140 1736 172 22 47 chr3 70114053 70114373 -157410205 - AluJb SINE Alu 0 312 1 4216 241 20 48 chr3 70114407 70115583 -157408995 - L1MDb LINE L1 -4987 1422 280 180 0 0 0 chr3 70115583 70115603 -157408975 + (A)n Simple_repeat Simple_repeat 1 20 0 1102 222 21 33 chr3 70115656 70115757 -157408821 - L1MDb LINE L1 -6168 241 140 2354 64 0 14 chr3 70115757 70116053 -157408525 - AluY SINE Alu -5 306 15 1102 222 21 33 chr3 70116053 70116194 -157408384 - L1MDb LINE L1 -6269 140 2 183 186 0 0 chr3 70116692 70116735 -157407843 + (CA)n Simple_repeat Simple_repeat 2 44 0 186 43 0 0 chr3 70118553 70118576 -157406002 + (CA)n Simple_repeat Simple_repeat 2 24 0 2024 125 0 36 chr3 70118860 70119164 -157405414 + AluSq SINE Alu 1 293 -20 2800 295 81 48 chr3 70119193 70119406 -157405172 - L1MEc LINE L1 -3873 2523 2319 3474 60 0 7 chr3 70119406 70119857 -157404721 - LTR7 LTR ERV1 -2 448 1 2800 295 81 48 chr3 70119857 70120079 -157404499 - L1MEc LINE L1 -4077 2319 2106 393 22 0 0 chr3 70120079 70120125 -157404453 + (TG)n Simple_repeat Simple_repeat 1 46 0 2800 295 81 48 chr3 70120125 70120539 -157404039 - L1MEc LINE L1 -4290 2106 1707 2454 94 0 22 chr3 70120539 70120902 -157403676 + L1PA10 LINE L1 5803 6157 -11 2800 295 81 48 chr3 70120902 70122449 -157402129 - L1MEc LINE L1 -4689 1707 45 248 300 0 0 chr3 70123693 70123763 -157400815 - L2 LINE L2 -65 3248 3179 1713 174 0 7 chr3 70124069 70124391 -157400187 - AluJb SINE Alu 0 312 1 1890 162 68 3 chr3 70124393 70124744 -157399834 - L1PB4 LINE L1 -1 6155 5782 314 275 0 33 chr3 70124790 70124881 -157399697 + L1MC4 LINE L1 6615 6702 -1340 1720 224 37 11 chr3 70124920 70125384 -157399194 - L1ME LINE L1 -2532 3850 3375 257 235 35 12 chr3 70126256 70126341 -157398237 - MIR SINE MIR 0 262 176 551 276 229 31 chr3 70126537 70126961 -157397617 - L1ME4a LINE L1 -6 6115 5608 397 322 54 34 chr3 70127301 70127655 -157396923 - L1ME4a LINE L1 -537 5625 5265 14676 126 31 8 chr3 70128259 70129193 -157395385 + Tigger1 DNA MER2_type 1 912 -1506 2144 117 0 3 chr3 70129193 70129491 -157395087 - AluSg SINE Alu -13 297 1 14676 126 31 8 chr3 70129491 70130919 -157393659 + Tigger1 DNA MER2_type 912 2418 0 189 74 0 0 chr3 70131156 70131183 -157393395 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 354 190 130 10 chr3 70131188 70131288 -157393290 - MIR SINE MIR -56 206 95 678 252 94 29 chr3 70131300 70131633 -157392945 - MLT1D LTR MaLR -8 459 1 2965 144 48 10 chr3 70132059 70132581 -157391997 + MER34 LTR ERV1 1 542 0 823 263 137 63 chr3 70132900 70133579 -157390999 - L1ME LINE L1 -4220 2162 1295 483 127 13 0 chr3 70133579 70133658 -157390920 - MADE1 DNA Mariner 0 80 1 823 263 137 63 chr3 70133658 70133851 -157390727 - L1ME LINE L1 -5087 1295 1118 * 1059 259 52 45 chr3 70133832 70134214 -157390364 - L1ME LINE L1 -5620 752 368 848 320 72 54 chr3 70134483 70135320 -157389258 - L1 LINE L1 -3092 3054 2203 336 282 90 32 chr3 70135394 70135550 -157389028 - MIR SINE MIR -51 211 47 2132 138 0 0 chr3 70135641 70135953 -157388625 - AluSq SINE Alu -1 312 1 1732 130 124 16 chr3 70136100 70136166 -157388412 - MER2 DNA MER2_type -3 342 284 2153 112 21 53 chr3 70136166 70136542 -157388036 + THE1B LTR MaLR 1 364 0 1732 130 124 16 chr3 70136542 70136782 -157387796 - MER2 DNA MER2_type -61 284 3 310 264 28 75 chr3 70138033 70138139 -157386439 - MER5A DNA MER1_type 0 189 89 347 281 109 92 chr3 70138184 70138533 -157386045 - HAL1b LINE L1 -941 407 53 1682 177 26 3 chr3 70138583 70138888 -157385690 - AluJb SINE Alu 0 312 1 1813 210 56 50 chr3 70139497 70139997 -157384581 + MLT1D LTR MaLR 3 505 0 200 83 0 28 chr3 70141515 70141551 -157383027 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 6162 40 3 0 chr3 70141554 70142297 -157382281 + L1PA5 LINE L1 5410 6154 0 2090 134 0 3 chr3 70142335 70142640 -157381938 + AluSx SINE Alu 1 304 -8 598 266 94 26 chr3 70142670 70142903 -157381675 + MIR SINE MIR 5 253 -9 832 224 102 10 chr3 70142926 70143131 -157381447 + MIR SINE MIR 8 231 -31 351 65 0 0 chr3 70143329 70143375 -157381203 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 25 31 0 0 chr3 70144362 70144394 -157380184 + AT_rich Low_complexity Low_complexity 1 32 0 336 301 50 60 chr3 70144463 70144662 -157379916 + L1ME3A LINE L1 5959 6155 -15 499 121 0 40 chr3 70144702 70144801 -157379777 + MER53 DNA DNA 92 186 -3 22 0 0 0 chr3 70144835 70144857 -157379721 + AT_rich Low_complexity Low_complexity 1 22 0 236 225 155 16 chr3 70146039 70146168 -157378410 - L1ME4a LINE L1 -3 6118 5972 505 250 82 24 chr3 70146360 70146568 -157378010 - L1ME4a LINE L1 -344 5777 5558 906 26 0 11 chr3 70146819 70146936 -157377642 + L1HS LINE L1 6050 6173 -1 327 49 0 0 chr3 70146978 70147019 -157377559 + (CA)n Simple_repeat Simple_repeat 2 42 0 1944 105 56 11 chr3 70147088 70147373 -157377205 + AluSx SINE Alu 2 299 -13 330 296 99 45 chr3 70147623 70148129 -157376449 - L1MC/D LINE L1 -623 5539 5315 1827 146 0 26 chr3 70148350 70148504 -157376074 - AluJb SINE Alu -12 300 156 4062 123 9 68 chr3 70148504 70149237 -157375341 - LTR8 LTR ERV1 0 691 2 1827 146 0 26 chr3 70149237 70149390 -157375188 - AluJb SINE Alu -156 156 1 239 279 144 28 chr3 70149702 70150132 -157374446 - L1MC/D LINE L1 -1712 4434 3955 1293 245 24 63 chr3 70150231 70150644 -157373934 + MLT1C LTR MaLR 69 465 -2 25 0 0 0 chr3 70151207 70151232 -157373346 + AT_rich Low_complexity Low_complexity 1 25 0 223 233 156 0 chr3 70152486 70152576 -157372002 - MIR3 SINE MIR -4 204 101 2434 53 22 3 chr3 70153322 70153641 -157370937 + L1PA8 LINE L1 5845 6169 -3 484 296 33 20 chr3 70154927 70155079 -157369499 + L1MC/D LINE L1 5439 5592 -2216 418 321 37 11 chr3 70155121 70155374 -157369204 - L1ME4a LINE L1 -272 5849 5592 5151 204 70 22 chr3 70156259 70157512 -157367066 - Charlie1a DNA MER1_type 0 1455 143 40779 44 1 3 chr3 70157512 70162552 -157362026 + L1PA3 LINE L1 5 5031 -1115 3699 44 0 2 chr3 70162557 70163010 -157361568 + L1PA3 LINE L1 5703 6154 -1 700 243 7 0 chr3 70163020 70163164 -157361414 - Charlie1a DNA MER1_type -1302 153 9 1937 114 39 11 chr3 70163195 70163476 -157361102 + AluSx SINE Alu 1 289 -23 210 37 0 0 chr3 70163479 70163506 -157361072 + (CA)n Simple_repeat Simple_repeat 2 28 0 3770 137 40 6 chr3 70163513 70164165 -157360413 - Tigger3b DNA MER2_type -557 674 1 2671 119 47 62 chr3 70164165 70164695 -157359883 + L1MA9 LINE L1 5786 6307 -5 205 333 0 0 chr3 70164700 70164760 -157359818 + MER5A DNA MER1_type 63 122 -67 290 293 147 17 chr3 70164906 70165022 -157359556 - MER5A DNA MER1_type 0 189 59 212 348 121 28 chr3 70164928 70165069 -157359509 + MER5A DNA MER1_type 35 188 -1 * 556 255 40 7 chr3 70165977 70166126 -157358452 + MER103 DNA DNA 3 156 -10 458 269 10 0 chr3 70166793 70166897 -157357681 + MER5A DNA MER1_type 5 109 -80 503 340 52 27 chr3 70167085 70167549 -157357029 + L2 LINE L2 2573 3060 -212 280 242 0 15 chr3 70167549 70167615 -157356963 + L2 LINE L2 3207 3271 -1 * 358 292 9 9 chr3 70167608 70167721 -157356857 + MIR SINE MIR 138 250 -12 694 218 24 24 chr3 70167775 70167940 -157356638 + MER5B DNA MER1_type 2 166 -12 1236 180 14 0 chr3 70169709 70169920 -157354658 - MER20 DNA MER1_type 0 219 6 2028 121 10 35 chr3 70169934 70170247 -157354331 - AluSx SINE Alu -7 305 1 2865 172 41 32 chr3 70170474 70171031 -157353547 + MER68 LTR ERV1 1 562 0 4830 163 26 22 chr3 70171197 70171874 -157352704 - L1MB8 LINE L1 0 6178 5493 2086 119 27 0 chr3 70171874 70172169 -157352409 - AluSx SINE Alu -5 307 5 4830 163 26 22 chr3 70172169 70172758 -157351820 - L1MB8 LINE L1 -685 5493 4908 513 268 26 105 chr3 70172979 70173207 -157351371 - MIR SINE MIR 0 262 53 380 244 98 43 chr3 70173878 70174042 -157350536 - MIR SINE MIR 0 262 90 2367 79 0 3 chr3 70174946 70175251 -157349327 + AluY SINE Alu 1 304 -7 318 306 129 6 chr3 70175359 70175529 -157349049 - L3 LINE CR1 -1031 546 356 180 158 0 0 chr3 70175779 70175817 -157348761 + T-rich Low_complexity Low_complexity 2 39 0 339 25 0 0 chr3 70175918 70175958 -157348620 + (CA)n Simple_repeat Simple_repeat 1 40 0 28 0 0 0 chr3 70176976 70177004 -157347574 + AT_rich Low_complexity Low_complexity 1 28 0 2040 127 0 40 chr3 70178061 70178384 -157346194 + AluSg SINE Alu 1 310 0 4076 154 34 19 chr3 70178446 70179146 -157345432 - MER50 LTR ERV1 -23 711 1 2302 91 19 10 chr3 70179908 70180216 -157344362 - AluSx SINE Alu -1 311 1 461 271 94 6 chr3 70180394 70180564 -157344014 - MER102b DNA MER1_type -50 291 107 261 0 0 0 chr3 70180663 70180692 -157343886 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 469 345 0 7 chr3 70181339 70181478 -157343100 - MER117 DNA MER1_type 0 197 60 1120 197 144 19 chr3 70181632 70181896 -157342682 - AluJo SINE Alu -5 297 1 1268 291 67 47 chr3 70182478 70183049 -157341529 + MLT1K LTR MaLR 3 584 -4 4042 176 40 16 chr3 70183210 70184039 -157340539 + L1MB7 LINE L1 5319 6167 -17 206 286 18 0 chr3 70185839 70185895 -157338683 + MIR SINE MIR 44 100 -108 1078 195 37 23 chr3 70185975 70185993 -157338585 - MER20 DNA MER1_type 0 219 203 4943 145 64 4 chr3 70185993 70186772 -157337806 + LTR1B LTR ERV1 1 826 0 1078 195 37 23 chr3 70186772 70186968 -157337610 - MER20 DNA MER1_type -16 203 2 738 291 45 5 chr3 70187470 70187690 -157336888 + MIR SINE MIR 8 236 -26 893 169 25 6 chr3 70187758 70187918 -157336660 - L1MB3 LINE L1 -2 6181 6019 334 308 101 40 chr3 70188803 70189001 -157335577 + L2 LINE L2 2863 3072 -200 369 279 45 45 chr3 70189101 70189255 -157335323 + MER5B DNA MER1_type 1 154 -24 328 255 189 33 chr3 70189282 70189435 -157335143 + MIR SINE MIR 63 239 -23 250 350 128 13 chr3 70190309 70190535 -157334043 + MIR SINE MIR 2 253 -9 354 350 0 10 chr3 70190606 70190706 -157333872 - L2 LINE L2 -25 3247 3149 450 214 32 24 chr3 70190719 70190845 -157333733 + Charlie8 DNA MER1_type 33 159 -2258 324 133 0 0 chr3 70191478 70191538 -157333040 + (A)n Simple_repeat Simple_repeat 1 60 0 377 348 9 9 chr3 70192080 70192195 -157332383 - L2 LINE L2 -3 3269 3155 935 118 15 0 chr3 70192196 70192332 -157332246 + BC200 scRNA scRNA 1 138 -62 406 316 122 63 chr3 70192448 70192951 -157331627 - L2 LINE L2 -245 3068 2522 529 301 92 86 chr3 70194262 70194727 -157329851 + L2 LINE L2 2804 3271 -1 21 0 0 0 chr3 70194825 70194846 -157329732 + AT_rich Low_complexity Low_complexity 1 21 0 364 266 116 1 chr3 70194974 70195099 -157329479 - MIR SINE MIR -62 146 48 347 239 168 36 chr3 70195450 70195615 -157328963 - MER34 LTR ERV1 0 542 356 1433 147 72 69 chr3 70195615 70195760 -157328818 + MER2 DNA MER2_type 1 144 -201 2155 117 3 0 chr3 70195760 70196060 -157328518 + AluSx SINE Alu 1 301 -11 1433 147 72 69 chr3 70196060 70196233 -157328345 + MER2 DNA MER2_type 144 320 -25 308 365 85 30 chr3 70196677 70197113 -157327465 - L2 LINE L2 -748 2566 2107 246 318 147 8 chr3 70197205 70197334 -157327244 - MIR SINE MIR -90 172 26 2463 180 40 30 chr3 70197490 70197592 -157326986 + LTR53 LTR ERVL 1 100 -419 2476 141 5 19 chr3 70197592 70197961 -157326617 + THE1B LTR MaLR 1 364 0 2463 180 40 30 chr3 70197961 70198353 -157326225 + LTR53 LTR ERVL 100 500 -19 214 288 36 58 chr3 70198385 70198524 -157326054 - MIR SINE MIR -20 242 107 1098 293 82 16 chr3 70198640 70199247 -157325331 + L1ME4a LINE L1 5256 5902 -219 1239 110 0 0 chr3 70201711 70201874 -157322704 + AluSp SINE Alu 133 295 -18 664 266 23 0 chr3 70202504 70202681 -157321897 - Charlie8 DNA MER1_type -2152 265 85 207 257 40 54 chr3 70203017 70203091 -157321487 + L2 LINE L2 3150 3222 -50 390 307 40 13 chr3 70203910 70204060 -157320518 - MIR SINE MIR -62 200 47 181 87 22 43 chr3 70204232 70204278 -157320300 + (CAAAAA)n Simple_repeat Simple_repeat 2 46 0 348 319 126 44 chr3 70204470 70205108 -157319470 - L2 LINE L2 -1 3312 2625 857 268 105 60 chr3 70205133 70205630 -157318948 + LTR33 LTR ERVL 3 521 0 1142 283 117 9 chr3 70205915 70206504 -157318074 - L2 LINE L2 -1 3312 2649 1617 224 137 36 chr3 70206505 70207117 -157317461 - L2 LINE L2 -907 2407 1734 554 162 11 49 chr3 70207132 70207317 -157317261 + CT-rich Low_complexity Low_complexity 2 179 0 647 295 184 5 chr3 70207361 70207730 -157316848 - L2 LINE L2 -1625 1689 1255 258 267 99 46 chr3 70209634 70209765 -157314813 + MLT1J LTR MaLR 238 375 -136 2051 165 67 44 chr3 70209816 70210221 -157314357 + MLT2D LTR ERVL 1 414 0 248 253 121 30 chr3 70210293 70210392 -157314186 + MIR SINE MIR 70 177 -85 536 215 231 26 chr3 70210652 70210847 -157313731 - MIR SINE MIR -3 259 25 571 253 10 56 chr3 70211156 70211354 -157313224 - MIR SINE MIR -44 218 30 183 80 0 0 chr3 70211478 70211503 -157313075 + (CA)n Simple_repeat Simple_repeat 1 25 0 283 222 43 8 chr3 70211952 70212069 -157312509 + (TA)n Simple_repeat Simple_repeat 2 122 0 2173 179 60 86 chr3 70212852 70213421 -157311157 + MLT2B3 LTR ERVL 1 554 0 351 306 47 0 chr3 70214017 70214102 -157310476 - L2 LINE L2 -36 3236 3148 410 346 43 28 chr3 70214542 70214796 -157309782 - MIR SINE MIR 0 262 5 661 322 25 21 chr3 70214975 70215475 -157309103 + ERVL LTR ERVL 3323 3848 -1806 255 269 103 64 chr3 70215643 70215799 -157308779 + ERVL LTR ERVL 4073 4234 -1420 1217 316 73 42 chr3 70216117 70216703 -157307875 + ERVL LTR ERVL 4323 4946 -818 2883 104 28 2 chr3 70216703 70217126 -157307452 - MER57B LTR ERV1 0 434 1 1217 316 73 42 chr3 70217126 70217382 -157307196 + ERVL LTR ERVL 4946 5192 -572 265 370 85 12 chr3 70217617 70217782 -157306796 + LTR67 LTR ERVL 66 242 -315 501 245 54 38 chr3 70217964 70218148 -157306430 + LTR67 LTR ERVL 364 550 -7 369 0 0 0 chr3 70219545 70219586 -157304992 + (TA)n Simple_repeat Simple_repeat 1 41 0 3253 171 74 16 chr3 70219699 70220378 -157304200 + LTR8A LTR ERV1 10 727 0 2499 190 62 28 chr3 70221405 70221536 -157303042 - MER44D DNA MER2_type -1883 604 479 2203 116 3 0 chr3 70221536 70221830 -157302748 - AluSq SINE Alu -18 295 1 2499 190 62 28 chr3 70221830 70222229 -157302349 - MER44D DNA MER2_type -2008 479 1 1658 148 80 22 chr3 70222529 70222853 -157301725 + MER61A LTR ERV1 1 343 0 1558 156 11 26 chr3 70222853 70223418 -157301160 + MER61A-int LTR ERV1 1 700 -4517 24908 89 31 11 chr3 70223455 70224359 -157300219 + MER61A-int LTR ERV1 1320 2204 -3013 5701 58 24 5 chr3 70224359 70225111 -157299467 - MER4E LTR ERV1 0 766 1 24908 89 31 11 chr3 70225111 70227982 -157296596 + MER61A-int LTR ERV1 2204 5217 0 1738 144 74 21 chr3 70227982 70228308 -157296270 + MER61A LTR ERV1 1 343 0 197 250 0 0 chr3 70228812 70228856 -157295722 + MIR SINE MIR 99 142 -66 1474 121 12 88 chr3 70229041 70229058 -157295520 - L1MA9 LINE L1 -250 6062 6045 566 158 65 0 chr3 70229058 70229197 -157295381 - L1MA9 LINE L1 0 6312 6165 1474 121 12 88 chr3 70229197 70229509 -157295069 - L1MA9 LINE L1 -267 6045 5758 623 149 35 0 chr3 70229504 70229618 -157294960 + L1M2 LINE L1 5445 5562 -750 * 1446 166 12 72 chr3 70229879 70230210 -157294368 - MLT1A1 LTR MaLR 0 365 55 1123 156 47 28 chr3 70230213 70230425 -157294153 - AluJb SINE Alu -10 302 87 276 114 0 129 chr3 70230427 70230497 -157294081 - MLT1A1 LTR MaLR -304 61 1 216 304 54 33 chr3 70231048 70231140 -157293438 + MIR3 SINE MIR 13 106 -102 448 287 33 13 chr3 70231299 70231449 -157293129 + LTR33 LTR ERVL 6 158 -363 1985 161 3 0 chr3 70231567 70231866 -157292712 - AluSx SINE Alu -12 300 1 1837 150 75 23 chr3 70231921 70232267 -157292311 + MLT1A1 LTR MaLR 2 365 0 351 0 0 0 chr3 70233127 70233166 -157291412 + (CA)n Simple_repeat Simple_repeat 2 40 0 341 318 0 9 chr3 70233367 70233474 -157291104 + MIR SINE MIR 41 146 -116 559 297 76 5 chr3 70233681 70233866 -157290712 + MIR SINE MIR 51 248 -14 22 0 0 0 chr3 70233867 70233889 -157290689 + AT_rich Low_complexity Low_complexity 1 22 0 276 238 12 38 chr3 70233946 70234026 -157290552 + L2 LINE L2 3181 3258 -14 185 0 40 0 chr3 70234026 70234051 -157290527 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 316 294 10 10 chr3 70234156 70234258 -157290320 + GA-rich Low_complexity Low_complexity 2 103 0 22 56 0 0 chr3 70234407 70234443 -157290135 + AT_rich Low_complexity Low_complexity 1 36 0 338 304 81 62 chr3 70234555 70234828 -157289750 + L2 LINE L2 3005 3282 -31 1780 249 31 18 chr3 70234861 70235375 -157289203 - MER82 DNA MER2_type -11 642 122 988 157 7 13 chr3 70235384 70235537 -157289041 + FRAM SINE Alu 9 160 -16 617 213 8 0 chr3 70235537 70235664 -157288914 - MER82 DNA MER2_type -524 129 2 208 231 26 0 chr3 70235664 70235742 -157288836 + (TA)n Simple_repeat Simple_repeat 2 81 0 23 0 0 0 chr3 70236071 70236094 -157288484 + AT_rich Low_complexity Low_complexity 1 23 0 279 203 0 0 chr3 70236332 70236406 -157288172 + (TA)n Simple_repeat Simple_repeat 2 75 0 296 24 24 0 chr3 70236406 70236447 -157288131 + (GA)n Simple_repeat Simple_repeat 2 43 0 2041 115 4 4 chr3 70236468 70236766 -157287812 + AluSc SINE Alu 1 298 0 1279 187 48 24 chr3 70237892 70238224 -157286354 + L1MC2 LINE L1 6004 6343 -1 202 223 181 53 chr3 70240190 70240284 -157284294 + L3 LINE CR1 1403 1508 -69 2112 140 0 3 chr3 70240523 70240831 -157283747 - AluSx SINE Alu -3 309 3 239 304 0 11 chr3 70240844 70240936 -157283642 - LTR16A1 LTR ERVL -56 401 311 414 0 0 0 chr3 70241604 70241650 -157282928 + (TGGA)n Simple_repeat Simple_repeat 4 49 0 298 237 32 11 chr3 70241651 70241744 -157282834 + HsTC2 DNA Tc2 1 95 -1803 326 311 48 12 chr3 70242295 70242462 -157282116 - L1MC4a LINE L1 -1880 5928 5756 1996 137 0 35 chr3 70242722 70243036 -157281542 - AluJb SINE Alu 0 312 10 2738 79 3 0 chr3 70243120 70243474 -157281104 - THE1A LTR MaLR 0 355 1 310 272 63 56 chr3 70243536 70243815 -157280763 - L1M4 LINE L1 -2995 3151 2867 1787 141 4 0 chr3 70243815 70244077 -157280501 - AluSx SINE Alu -14 298 36 310 272 63 56 chr3 70244077 70244191 -157280387 - L1M4 LINE L1 -3279 2867 2755 2106 219 89 52 chr3 70244355 70244686 -157279892 + Zaphod DNA AcHobo 95 412 -3619 270 0 0 0 chr3 70244686 70244716 -157279862 + (TAG)n Simple_repeat Simple_repeat 2 31 0 2106 219 89 52 chr3 70244716 70245246 -157279332 + Zaphod DNA AcHobo 412 988 -3043 362 132 0 0 chr3 70245246 70245299 -157279279 - MER58 DNA MER1_type 0 2420 2368 287 256 0 39 chr3 70245297 70245375 -157279203 - MER58 DNA MER1_type -2150 270 196 * 1273 217 67 24 chr3 70245419 70245838 -157278740 + Zaphod DNA AcHobo 3595 4031 0 226 214 71 0 chr3 70245839 70245895 -157278683 - L2 LINE L2 -67 3246 3187 187 328 0 0 chr3 70245903 70245967 -157278611 + L2 LINE L2 2561 2624 -690 1437 124 0 0 chr3 70245967 70246168 -157278410 - AluSg/x SINE Alu -11 301 101 255 170 0 75 chr3 70246168 70246221 -157278357 - Alu SINE Alu -252 49 1 589 334 89 47 chr3 70246221 70246397 -157278181 + L2 LINE L2 2616 2783 -530 2269 91 3 0 chr3 70246397 70246684 -157277894 - AluSp SINE Alu -25 288 1 589 334 89 47 chr3 70246684 70247182 -157277396 + L2 LINE L2 2783 3313 0 368 302 27 83 chr3 70247679 70247783 -157276795 - LTR16C LTR ERVL -23 468 360 1192 230 83 62 chr3 70247783 70248231 -157276347 - LTR16A1 LTR ERVL 0 457 1 368 302 27 83 chr3 70248231 70248464 -157276114 - LTR16C LTR ERVL -131 360 150 225 0 0 0 chr3 70250214 70250239 -157274339 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 775 261 92 0 chr3 70251612 70251807 -157272771 + MIR SINE MIR 19 231 -31 219 340 63 44 chr3 70251866 70252072 -157272506 + L2 LINE L2 2852 3061 -211 222 274 0 0 chr3 70252194 70252245 -157272333 + L2 LINE L2 3263 3313 0 1603 137 41 115 chr3 70252445 70252748 -157271830 - MLT1B LTR MaLR -4 386 121 2386 83 0 13 chr3 70252748 70253061 -157271517 - AluY SINE Alu -2 309 1 1603 137 41 115 chr3 70253061 70253174 -157271404 - MLT1B LTR MaLR -269 121 1 228 352 55 47 chr3 70253866 70253994 -157270584 + L2 LINE L2 3133 3261 -11 1365 183 4 58 chr3 70254536 70254810 -157269768 + AluJb SINE Alu 44 302 -10 279 298 58 44 chr3 70254934 70255139 -157269439 - L2 LINE L2 -75 3238 3031 1405 165 70 13 chr3 70255702 70256141 -157268437 - LTR54 LTR ERV1 -1 509 1 526 246 33 0 chr3 70256797 70256919 -157267659 - MER5A DNA MER1_type -6 183 58 311 183 269 0 chr3 70257051 70257155 -157267423 - MER5B DNA MER1_type -7 171 40 395 321 38 8 chr3 70258141 70258272 -157266306 + MIR SINE MIR 20 154 -108 193 256 0 0 chr3 70258538 70258577 -157266001 - L3 LINE CR1 -7 1570 1532 183 313 90 0 chr3 70258785 70258852 -157265726 - MIR SINE MIR -100 108 36 232 339 80 9 chr3 70258998 70259110 -157265468 + MIR SINE MIR 117 236 -26 1612 164 68 4 chr3 70259378 70259659 -157264919 - AluSq SINE Alu -14 299 1 349 315 21 52 chr3 70259988 70260165 -157264413 + MIR SINE MIR 12 185 -77 1657 201 27 54 chr3 70260165 70260572 -157264006 + MSTD LTR MaLR 1 396 0 349 315 21 52 chr3 70260572 70260593 -157263985 + MIR SINE MIR 185 205 -57 796 253 36 0 chr3 70260974 70261275 -157263303 - L1ME LINE L1 -3681 2399 2088 7345 212 22 11 chr3 70261401 70264045 -157260533 - L1PA16 LINE L1 -2 6164 3536 2235 250 76 43 chr3 70264055 70265696 -157258882 - L1ME LINE L1 -3967 2113 431 409 246 32 0 chr3 70265756 70265882 -157258696 - L1ME LINE L1 -3681 2399 2270 1125 233 20 88 chr3 70265884 70266327 -157258251 - L1ME LINE L1 -5652 418 6 474 296 68 6 chr3 70266808 70266984 -157257594 - MIR SINE MIR -12 250 64 2041 138 7 0 chr3 70267215 70267505 -157257073 + AluSx SINE Alu 1 292 -20 189 0 0 0 chr3 70268156 70268177 -157256401 + (TTA)n Simple_repeat Simple_repeat 3 23 0 2087 108 8 0 chr3 70268180 70268448 -157256130 - AluSx SINE Alu -22 290 21 264 330 78 26 chr3 70269381 70269496 -157255082 - MIR3 SINE MIR -79 129 9 324 271 104 83 chr3 70269742 70269934 -157254644 + MIR SINE MIR 46 241 -21 1515 254 85 16 chr3 70270256 70270470 -157254108 - L2 LINE L2 -2 3311 3113 1921 158 50 76 chr3 70270470 70270946 -157253632 + MLT1C LTR MaLR 4 467 0 1515 254 85 16 chr3 70270946 70271511 -157253067 - L2 LINE L2 -200 3113 2487 351 260 95 37 chr3 70271652 70271782 -157252796 + L1MC4a LINE L1 5257 5378 -786 2399 125 5 19 chr3 70271782 70272150 -157252428 + THE1B LTR MaLR 1 363 -1 351 260 95 37 chr3 70272150 70272261 -157252317 + L1MC4a LINE L1 5378 5512 -652 300 352 50 17 chr3 70272446 70272625 -157251953 + L1MC4a LINE L1 5717 5901 -1907 2246 121 3 18 chr3 70272663 70273003 -157251575 + MER1B DNA MER1_type 3 337 0 653 96 0 10 chr3 70273309 70273413 -157251165 + (GGAA)n Simple_repeat Simple_repeat 3 105 0 1625 80 5 0 chr3 70273478 70273712 -157250866 - AluSp SINE Alu 0 317 83 486 267 75 32 chr3 70275175 70275362 -157249216 + MIR SINE MIR 49 243 -19 246 297 20 14 chr3 70275365 70275513 -157249065 + (TTA)n Simple_repeat Simple_repeat 2 150 0 255 221 39 26 chr3 70275574 70275651 -157248927 - L2 LINE L2 -1 3312 3235 2027 127 3 0 chr3 70275755 70276061 -157248517 + AluSq SINE Alu 1 307 0 275 352 33 0 chr3 70276266 70276357 -157248221 - L2 LINE L2 -8 3264 3171 201 351 45 27 chr3 70276752 70276863 -157247715 + L2 LINE L2 3200 3312 -1 3166 126 38 6 chr3 70276927 70277453 -157247125 + MER34C LTR ERV1 43 585 0 183 250 125 56 chr3 70278673 70278745 -157245833 + MIR3 SINE MIR 2 78 -130 425 286 223 15 chr3 70278782 70278988 -157245590 - MIR SINE MIR -1 261 13 188 236 246 27 chr3 70279110 70279220 -157245358 + MIR SINE MIR 81 214 -48 323 290 48 24 chr3 70279237 70279361 -157245217 - MIR SINE MIR 0 262 136 491 228 24 24 chr3 70279405 70279528 -157245050 - MIR SINE MIR -104 158 36 745 168 87 27 chr3 70279937 70280152 -157244426 - MER33 DNA MER1_type -97 227 1 711 262 102 56 chr3 70280155 70280587 -157243991 - HAL1 LINE L1 -1778 729 278 4590 167 58 25 chr3 70280722 70281735 -157242843 - L1MD1 LINE L1 0 6636 5593 1836 145 16 35 chr3 70281735 70282053 -157242525 + AluSx SINE Alu 1 312 0 4590 167 58 25 chr3 70282053 70282224 -157242354 - L1MD1 LINE L1 -1043 5593 5429 1989 222 38 48 chr3 70282226 70282765 -157241813 - L1MD1 LINE L1 -1323 5217 4685 1287 206 13 48 chr3 70282765 70283076 -157241502 - AluJo SINE Alu -12 300 1 1989 222 38 48 chr3 70283076 70283267 -157241311 - L1MD1 LINE L1 -1855 4685 4494 1608 267 32 2 chr3 70283264 70283799 -157240779 - L1MD1 LINE L1 -2312 4228 3678 * 1416 139 80 1 chr3 70283799 70284067 -157240511 - LTR38B LTR ERV1 0 611 324 282 194 10 61 chr3 70284073 70284171 -157240407 - L1MD1 LINE L1 -4596 1944 1852 1921 114 13 3 chr3 70284192 70284500 -157240078 - LTR38B LTR ERV1 -299 311 1 338 149 64 32 chr3 70284500 70284594 -157239984 - L1MEc LINE L1 -2859 3681 3585 * 2234 181 74 20 chr3 70284579 70285264 -157239314 - L1MEc LINE L1 -3812 2728 2003 316 209 0 30 chr3 70285265 70285332 -157239246 - AluJ/FRAM SINE Alu -6 296 232 2088 78 7 3 chr3 70285352 70285675 -157238903 + AluSx SINE Alu 1 324 0 467 177 10 13 chr3 70285675 70285799 -157238779 - L1MEc LINE L1 -4575 2004 1869 315 0 0 0 chr3 70289763 70289798 -157234780 + (TA)n Simple_repeat Simple_repeat 2 36 0 243 0 0 0 chr3 70289798 70289825 -157234753 + (T)n Simple_repeat Simple_repeat 1 27 0 206 265 20 0 chr3 70290294 70290343 -157234235 - MER5B DNA MER1_type -126 52 3 21 0 0 0 chr3 70291672 70291693 -157232885 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 70292409 70292430 -157232148 + AT_rich Low_complexity Low_complexity 1 21 0 192 111 0 0 chr3 70292490 70292526 -157232052 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 28 29 0 0 chr3 70292711 70292746 -157231832 + AT_rich Low_complexity Low_complexity 1 35 0 2313 113 0 0 chr3 70293992 70294293 -157230285 - AluSx SINE Alu -11 301 1 200 184 20 0 chr3 70294853 70294902 -157229676 + CT-rich Low_complexity Low_complexity 3 52 0 749 275 52 22 chr3 70295721 70295950 -157228628 + MIR SINE MIR 27 262 0 219 192 39 0 chr3 70296365 70296417 -157228161 + GA-rich Low_complexity Low_complexity 2 55 0 207 0 0 0 chr3 70296611 70296634 -157227944 + (TA)n Simple_repeat Simple_repeat 1 23 0 273 283 133 18 chr3 70296812 70296925 -157227653 + MIR SINE MIR 30 155 -107 300 204 0 0 chr3 70297327 70297381 -157227197 + L2 LINE L2 3017 3070 -243 396 0 0 0 chr3 70297493 70297537 -157227041 + (TC)n Simple_repeat Simple_repeat 1 44 0 548 277 66 45 chr3 70297544 70297833 -157226745 + L2 LINE L2 2994 3288 -25 1713 209 75 48 chr3 70299112 70299615 -157224963 + MLT2B1 LTR ERVL 4 520 0 21 0 0 0 chr3 70299805 70299826 -157224752 + AT_rich Low_complexity Low_complexity 1 21 0 582 198 0 10 chr3 70299915 70300016 -157224562 + FLAM_C SINE Alu 23 122 -21 360 296 29 93 chr3 70301638 70301983 -157222595 - MLT1J LTR MaLR -78 433 111 971 242 161 46 chr3 70302312 70302832 -157221746 + MLT1L LTR MaLR 36 615 0 957 230 14 14 chr3 70303562 70303779 -157220799 - U3 snRNA snRNA 0 217 1 292 365 41 19 chr3 70303779 70304050 -157220528 + L2 LINE L2 2687 2963 -351 798 272 30 13 chr3 70304530 70304762 -157219816 + MIR SINE MIR 17 252 -10 1653 164 12 0 chr3 70304824 70305080 -157219498 + AluJo SINE Alu 3 261 -51 334 315 22 0 chr3 70305241 70305333 -157219245 + L2 LINE L2 3171 3264 -8 323 287 49 41 chr3 70306341 70306463 -157218115 + MIR SINE MIR 3 125 -137 539 244 134 34 chr3 70306602 70306864 -157217714 + MLT1J2 LTR MaLR 43 330 -120 198 0 0 0 chr3 70306897 70306919 -157217659 + (T)n Simple_repeat Simple_repeat 1 22 0 2164 119 3 0 chr3 70306936 70307229 -157217349 + AluSx SINE Alu 2 295 -17 313 74 0 91 chr3 70307230 70307351 -157217227 + (TA)n Simple_repeat Simple_repeat 2 111 0 314 350 41 0 chr3 70307581 70307678 -157216900 + MIR SINE MIR 34 134 -74 2231 83 0 21 chr3 70308340 70308628 -157215950 + AluSx SINE Alu 1 282 -30 401 69 0 0 chr3 70308628 70308686 -157215892 + AluJo SINE Alu 244 301 -8 411 79 158 0 chr3 70309007 70309083 -157215495 - Tigger3(Golem) DNA MER2_type -171 2858 2771 * 813 189 0 44 chr3 70309062 70309221 -157215357 - Tigger3(Golem) DNA MER2_type -451 2578 1 399 255 20 20 chr3 70309221 70309370 -157215208 - L1ME LINE L1 -320 5801 5653 416 285 288 13 chr3 70312105 70312134 -157212444 + L2 LINE L2 324 344 -2970 794 206 35 5 chr3 70312134 70312333 -157212245 - MER3 DNA MER1_type 0 209 5 416 285 288 13 chr3 70312333 70312685 -157211893 + L2 LINE L2 344 810 -2504 361 292 8 0 chr3 70312739 70312849 -157211729 + MER20B DNA MER1_type 88 202 -17 1634 268 128 25 chr3 70312885 70313494 -157211084 + L2 LINE L2 850 1521 -1793 1662 144 8 4 chr3 70313509 70313766 -157210812 + AluSx SINE Alu 41 298 -14 1014 317 106 28 chr3 70313766 70314304 -157210274 + L2 LINE L2 2741 3310 -3 467 280 43 50 chr3 70315634 70316098 -157208480 + L1M4 LINE L1 2225 2685 -3461 351 224 76 50 chr3 70316254 70316531 -157208047 + L1M4 LINE L1 2938 3221 -2925 180 152 0 0 chr3 70316570 70316603 -157207975 + GA-rich Low_complexity Low_complexity 2 34 0 189 364 34 0 chr3 70316845 70316933 -157207645 - L2 LINE L2 0 3272 3182 1313 143 23 5 chr3 70316964 70317180 -157207398 + AluSg/x SINE Alu 86 305 -7 272 305 32 78 chr3 70317230 70317384 -157207194 - L2 LINE L2 -194 3078 2932 226 187 28 140 chr3 70317851 70317929 -157206649 + MER5C DNA MER1_type 30 94 -230 1445 160 45 13 chr3 70317929 70318241 -157206337 + MER33 DNA MER1_type 3 324 0 226 187 28 140 chr3 70318241 70318269 -157206309 + MER5C DNA MER1_type 94 124 -200 329 250 20 30 chr3 70318290 70318390 -157206188 + MER5C DNA MER1_type 226 324 0 489 228 81 7 chr3 70319719 70319855 -157204723 - MER58B DNA MER1_type -3 338 193 231 237 0 0 chr3 70319855 70319914 -157204664 + L1ME LINE L1 5610 5668 -453 2370 110 0 0 chr3 70321301 70321611 -157202967 + AluSg SINE Alu 1 310 0 301 270 226 9 chr3 70323186 70323301 -157201277 - L2 LINE L2 0 3272 3133 306 302 252 31 chr3 70323474 70323696 -157200882 - L3 LINE CR1 0 1577 1307 230 337 33 11 chr3 70323779 70323871 -157200707 + L2 LINE L2 3137 3230 -42 230 298 0 79 chr3 70324130 70324244 -157200334 - L2 LINE L2 -211 3061 2957 432 284 99 43 chr3 70324415 70324626 -157199952 + MIR SINE MIR 14 236 -26 189 107 0 0 chr3 70324857 70324885 -157199693 + (T)n Simple_repeat Simple_repeat 1 28 0 1162 188 43 3 chr3 70325609 70325913 -157198665 + MER33 DNA MER1_type 1 316 -8 377 286 55 28 chr3 70325940 70326122 -157198456 - L1ME4a LINE L1 -178 5943 5757 634 274 116 59 chr3 70326360 70326817 -157197761 - LTR33 LTR ERVL -16 505 23 413 264 157 0 chr3 70326864 70327004 -157197574 + MIR SINE MIR 60 221 -41 16459 34 3 1 chr3 70327790 70330559 -157194019 - L1PA4 LINE L1 -3 6152 3378 968 183 0 6 chr3 70330586 70330779 -157193799 - AluJb SINE Alu 0 311 120 9647 81 30 22 chr3 70330830 70332205 -157192373 - SVA Other Other 0 1386 1 25267 59 2 1 chr3 70332209 70335590 -157188988 - L1P LINE L1 -2758 3388 2 629 311 20 32 chr3 70335679 70335927 -157188651 - MIR SINE MIR -12 250 6 256 329 38 0 chr3 70337841 70337920 -157186658 + L2 LINE L2 3188 3269 -3 209 270 79 34 chr3 70338064 70338153 -157186425 + L2 LINE L2 3221 3313 0 293 325 114 47 chr3 70338349 70338666 -157185912 + L2 LINE L2 2715 3059 -213 540 272 110 6 chr3 70338933 70339106 -157185472 - MIR SINE MIR -26 236 46 2334 92 0 3 chr3 70339117 70339412 -157185166 - AluSc SINE Alu -15 294 1 254 286 34 8 chr3 70340301 70340420 -157184158 + MER113 DNA MER1_type? 312 433 -88 2189 128 46 8 chr3 70340876 70341227 -157183351 - THE1B LTR MaLR 0 364 1 648 298 109 33 chr3 70341295 70341926 -157182652 - L2 LINE L2 -94 3219 2519 720 262 32 24 chr3 70342792 70343044 -157181534 + L1ME LINE L1 5539 5792 -329 505 10 0 127 chr3 70345176 70345491 -157179087 + (TA)n Simple_repeat Simple_repeat 1 274 0 1278 128 43 19 chr3 70345585 70345796 -157178782 - MER20 DNA MER1_type 0 219 4 1029 60 52 0 chr3 70346071 70346205 -157178373 + AluY SINE Alu 158 298 -13 326 272 98 22 chr3 70346294 70346386 -157178192 - L2 LINE L2 -12 3301 3203 1768 156 46 13 chr3 70346412 70346714 -157177864 - AluJo SINE Alu 0 312 1 1241 227 82 93 chr3 70346765 70346813 -157177765 + MLT1E2 LTR MaLR 1 48 -578 2277 106 0 7 chr3 70346813 70347114 -157177464 + AluSx SINE Alu 1 299 -13 1241 227 82 93 chr3 70347114 70347712 -157176866 + MLT1E2 LTR MaLR 48 624 -2 286 344 50 31 chr3 70347860 70348020 -157176558 - L2 LINE L2 -1 3271 3109 632 294 16 26 chr3 70348123 70348154 -157176424 - MIR SINE MIR -70 192 162 2468 113 19 14 chr3 70348154 70348516 -157176062 - THE1B LTR MaLR 0 364 1 632 294 16 26 chr3 70348516 70348678 -157175900 - MIR SINE MIR -100 162 1 207 91 0 68 chr3 70349254 70349298 -157175280 + (TAAAA)n Simple_repeat Simple_repeat 4 44 0 864 223 36 0 chr3 70349477 70349670 -157174908 - MER3 DNA MER1_type 0 209 10 1288 203 146 38 chr3 70350465 70350937 -157173641 + MLT1F LTR MaLR 24 563 -4 641 281 51 58 chr3 70351872 70352185 -157172393 + MLT1I LTR MaLR 99 409 0 1716 211 0 16 chr3 70355881 70356062 -157168516 - AluJb SINE Alu -13 299 123 225 0 0 0 chr3 70356062 70356087 -157168491 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1716 211 0 16 chr3 70356087 70356209 -157168369 - AluJb SINE Alu -189 123 1 225 160 20 40 chr3 70356682 70356732 -157167846 + CT-rich Low_complexity Low_complexity 5 53 0 327 85 0 0 chr3 70357368 70357415 -157167163 + (GA)n Simple_repeat Simple_repeat 2 48 0 503 264 101 22 chr3 70358327 70358505 -157166073 + MIR SINE MIR 70 261 -1 408 323 87 36 chr3 70359066 70359307 -157165271 + MIR SINE MIR 3 252 -10 774 269 5 11 chr3 70359901 70360105 -157164473 - MIR SINE MIR -13 249 49 369 0 0 0 chr3 70360170 70360211 -157164367 + (TG)n Simple_repeat Simple_repeat 2 42 0 7885 207 28 43 chr3 70360963 70362737 -157161841 + L1MA4 LINE L1 1 1747 -5421 6142 29 5 0 chr3 70362741 70363500 -157161078 - L1PA4 LINE L1 -1 6154 5392 14070 191 32 25 chr3 70363516 70364698 -157159880 + L1MA4 LINE L1 1758 2930 -4391 2103 126 7 0 chr3 70364698 70365012 -157159566 + AluSp SINE Alu 1 316 0 14070 191 32 25 chr3 70365012 70368899 -157155679 + L1MA4 LINE L1 2930 6916 -405 1332 198 101 21 chr3 70368899 70369187 -157155391 + AluJb SINE Alu 1 311 -1 14070 191 32 25 chr3 70369187 70369595 -157154983 + L1MA4 LINE L1 6916 7319 -2 610 349 111 23 chr3 70369734 70370310 -157154268 + L2 LINE L2 2684 3313 0 2335 92 0 3 chr3 70371610 70371915 -157152663 + AluSq SINE Alu 1 304 -9 424 379 16 11 chr3 70372171 70372353 -157152225 - MIR3 SINE MIR -7 201 19 674 109 55 0 chr3 70373025 70373170 -157151408 - L1MD2 LINE L1 -9 6350 6168 1730 212 97 39 chr3 70373170 70373688 -157150890 + LTR10A LTR ERV1 1 548 -61 181 208 21 42 chr3 70373737 70373785 -157150793 - MIR SINE MIR -2 260 214 842 300 79 21 chr3 70374319 70374786 -157149792 + MLT1H1 LTR MaLR 62 555 0 507 312 28 32 chr3 70375450 70375928 -157148650 + MLT1K LTR MaLR 11 568 -20 278 249 109 24 chr3 70376933 70377098 -157147480 + L1ME4a LINE L1 5721 5899 -222 479 238 0 0 chr3 70377243 70377348 -157147230 + MER34 LTR ERV1 1 105 -437 * 756 234 78 55 chr3 70377343 70377711 -157146867 + MER39 LTR ERV1 321 539 -3 205 27 81 0 chr3 70378914 70378951 -157145627 + A-rich Low_complexity Low_complexity 1 40 0 2064 248 85 53 chr3 70378967 70379869 -157144709 - L1MC4 LINE L1 -8 8034 7104 760 92 8 8 chr3 70379872 70379992 -157144586 + (TTTC)n Simple_repeat Simple_repeat 2 121 0 2785 227 86 57 chr3 70380030 70380167 -157144411 - L1MC4a LINE L1 -934 6874 6742 1872 113 74 40 chr3 70380167 70380493 -157144085 + MER1B DNA MER1_type 1 337 0 2785 227 86 57 chr3 70380493 70381443 -157143135 - L1MC4a LINE L1 -1066 6742 5755 398 199 58 51 chr3 70381476 70381632 -157142946 - L1MC4a LINE L1 -2398 5410 5254 449 301 173 19 chr3 70382375 70382750 -157141828 - L1ME4a LINE L1 -210 5911 5479 393 239 132 56 chr3 70384460 70384527 -157140051 - MER96B DNA MER1_type? 0 417 357 998 179 17 6 chr3 70384527 70384700 -157139878 + FAM SINE Alu 1 175 0 393 239 132 56 chr3 70384700 70384829 -157139749 - MER96B DNA MER1_type? -60 357 206 32 0 0 0 chr3 70384848 70384880 -157139698 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr3 70384928 70384971 -157139607 + AT_rich Low_complexity Low_complexity 1 43 0 1525 135 0 0 chr3 70385026 70385241 -157139337 - AluSg/x SINE Alu -13 297 83 23 68 0 0 chr3 70385354 70385398 -157139180 + AT_rich Low_complexity Low_complexity 1 44 0 661 180 70 12 chr3 70385399 70385571 -157139007 + MER96B DNA MER1_type? 191 372 -45 38842 70 3 4 chr3 70385852 70391787 -157132791 + L1PA5 LINE L1 228 6151 -3 321 96 19 0 chr3 70391794 70391846 -157132732 - L1P5 LINE L1 -681 5475 5423 310 302 23 23 chr3 70392264 70392393 -157132185 - L1ME4a LINE L1 0 6121 5993 186 43 0 0 chr3 70392393 70392416 -157132162 + (A)n Simple_repeat Simple_repeat 1 23 0 321 299 174 48 chr3 70392419 70392770 -157131808 + L2 LINE L2 2841 3235 -37 298 245 102 31 chr3 70392931 70393029 -157131549 - MIR SINE MIR -121 141 37 318 213 64 11 chr3 70393084 70393178 -157131400 - MER103 DNA DNA -25 141 43 24 0 0 0 chr3 70394239 70394263 -157130315 + AT_rich Low_complexity Low_complexity 1 24 0 2384 90 0 3 chr3 70394675 70394986 -157129592 + AluSg SINE Alu 1 310 0 277 254 15 0 chr3 70395492 70395559 -157129019 + Charlie8 DNA MER1_type 1349 1416 -1001 444 118 0 0 chr3 70396558 70396626 -157127952 + (TA)n Simple_repeat Simple_repeat 2 69 0 349 259 61 14 chr3 70396894 70397041 -157127537 - L1ME4a LINE L1 -262 5904 5751 369 309 25 12 chr3 70397274 70397436 -157127142 + MER117 DNA MER1_type 33 196 -1 266 368 13 0 chr3 70398903 70398979 -157125599 - L2 LINE L2 -93 3179 3103 2083 208 68 37 chr3 70399150 70399665 -157124913 - MER34 LTR ERV1 0 542 12 2158 100 7 0 chr3 70400051 70400330 -157124248 - AluSq SINE Alu -32 281 1 22 70 0 0 chr3 70400890 70400933 -157123645 + AT_rich Low_complexity Low_complexity 1 43 0 760 244 172 62 chr3 70401117 70401653 -157122925 + MLT1G1 LTR MaLR 1 595 0 517 255 183 0 chr3 70401698 70401851 -157122727 - MER5A DNA MER1_type 0 189 9 2060 178 68 59 chr3 70402221 70402750 -157121828 - MER34B LTR ERV1 -21 544 11 428 293 127 17 chr3 70402761 70402942 -157121636 - MIR SINE MIR -55 207 7 342 67 0 0 chr3 70403139 70403184 -157121394 + (TG)n Simple_repeat Simple_repeat 2 46 0 201 222 0 0 chr3 70403784 70403820 -157120758 + (TGG)n Simple_repeat Simple_repeat 1 36 0 243 0 0 0 chr3 70403824 70403851 -157120727 + (TG)n Simple_repeat Simple_repeat 1 27 0 226 278 40 66 chr3 70404255 70404406 -157120172 - MLT1K LTR MaLR -23 565 419 * 378 237 167 32 chr3 70404405 70404513 -157120065 - MER69A DNA AcHobo -2349 177 40 2437 74 0 3 chr3 70404513 70404822 -157119756 + AluY SINE Alu 1 308 -3 378 237 167 32 chr3 70404822 70404869 -157119709 - MER69A DNA AcHobo -2486 40 1 2299 101 0 0 chr3 70405838 70406136 -157118442 - AluSg SINE Alu -12 298 1 275 333 56 9 chr3 70406282 70406390 -157118188 + L2 LINE L2 3158 3270 -2 577 307 66 0 chr3 70407200 70407441 -157117137 + MIR SINE MIR 2 258 -4 452 265 66 48 chr3 70407844 70408116 -157116462 - L1MC4 LINE L1 -566 7476 7200 342 216 0 0 chr3 70408332 70408406 -157116172 - L1ME3A LINE L1 -12 6158 6085 3234 234 88 74 chr3 70408422 70409913 -157114665 - L1MC4a LINE L1 -881 6927 5416 507 231 16 0 chr3 70409902 70410023 -157114555 - L1MC3 LINE L1 0 7785 7663 * 475 220 7 7 chr3 70410018 70410159 -157114419 - L1P5 LINE L1 -695 5459 5320 * 2285 94 0 3 chr3 70410179 70410477 -157114101 - AluSg1 SINE Alu -12 297 1 492 280 33 62 chr3 70410490 70410759 -157113819 - L1MC4a LINE L1 -874 5272 5011 236 315 147 0 chr3 70411666 70411850 -157112728 + MIR SINE MIR 39 249 -13 862 305 127 17 chr3 70412301 70412718 -157111860 - MLT1K LTR MaLR -47 541 79 1755 194 77 8 chr3 70412727 70413128 -157111450 + L1ME1 LINE L1 5733 6161 -5 788 142 0 7 chr3 70464278 70464419 -157060159 + (TAGA)n Simple_repeat Simple_repeat 4 143 0 573 252 15 0 chr3 70466653 70466784 -157057794 - MIR SINE MIR -50 212 80 376 250 107 18 chr3 70467821 70467933 -157056645 + Charlie2b DNA MER1_type 43 164 -2618 723 206 30 18 chr3 70467943 70468108 -157056470 + Charlie2b DNA MER1_type 502 668 -2114 3417 214 106 24 chr3 70468190 70469378 -157055200 + Charlie2a DNA MER1_type 1482 2766 -96 301 257 14 27 chr3 70470175 70470249 -157054329 + MIR3 SINE MIR 87 159 -49 195 256 0 0 chr3 70470463 70470506 -157054072 + L3 LINE CR1 1532 1574 -3 337 229 0 92 chr3 70470731 70470758 -157053820 - L1MC4 LINE L1 -1330 6712 6684 2551 68 0 3 chr3 70470758 70471068 -157053510 + AluY SINE Alu 1 309 -2 337 229 0 92 chr3 70471068 70471149 -157053429 - L1MC4 LINE L1 -1358 6684 6614 227 265 0 0 chr3 70471149 70471198 -157053380 + (CATA)n Simple_repeat Simple_repeat 4 52 0 2025 145 3 10 chr3 70473264 70473575 -157051003 + AluSq SINE Alu 1 309 -4 708 288 66 9 chr3 70474286 70474512 -157050066 - MIR SINE MIR 0 262 24 180 278 0 0 chr3 70476056 70476092 -157048486 - L2 LINE L2 -2852 462 427 1344 59 12 0 chr3 70476128 70476298 -157048280 - L1PA7 LINE L1 -1 6153 5982 2849 74 9 0 chr3 70476298 70476770 -157047808 - L1PA7 LINE L1 -500 5654 5175 * 20590 94 5 11 chr3 70476765 70477577 -157047001 + L1P LINE L1 1975 2791 -3355 2805 10 0 0 chr3 70477577 70477884 -157046694 + AluYa5 SINE Alu 1 307 -4 20590 94 5 11 chr3 70477884 70480275 -157044303 + L1P LINE L1 2791 5157 -989 322 303 82 26 chr3 70482170 70482401 -157042177 + L1ME4a LINE L1 5878 6121 0 366 297 147 15 chr3 70482534 70482732 -157041846 + MIR SINE MIR 25 243 -19 1368 107 84 14 chr3 70482806 70483021 -157041557 - MER30 DNA MER1_type 0 230 1 1271 188 142 61 chr3 70483157 70483349 -157041229 - MER63 DNA MER1_type 0 1061 886 2214 111 0 0 chr3 70483349 70483646 -157040932 - AluSx SINE Alu -15 297 1 1271 188 142 61 chr3 70483646 70483959 -157040619 - MER63 DNA MER1_type -175 886 515 1095 207 0 68 chr3 70483944 70484253 -157040325 - MER63 DNA MER1_type -772 289 2 * 735 283 63 17 chr3 70484779 70485016 -157039562 + MIR SINE MIR 3 250 -12 186 43 0 0 chr3 70485149 70485172 -157039406 + (A)n Simple_repeat Simple_repeat 1 23 0 394 203 173 45 chr3 70486151 70486224 -157038354 + MER5A DNA MER1_type 40 102 -87 1837 153 0 0 chr3 70486224 70486529 -157038049 - AluJb SINE Alu 0 305 1 394 203 173 45 chr3 70486529 70486587 -157037991 + MER5A DNA MER1_type 102 189 0 692 170 127 0 chr3 70486652 70486817 -157037761 - MER3 DNA MER1_type -17 192 7 510 267 104 62 chr3 70486817 70487360 -157037218 - L2 LINE L2 -70 3243 2684 261 322 51 8 chr3 70488393 70488511 -157036067 - L2 LINE L2 -1 3312 3190 2869 155 46 0 chr3 70488981 70489477 -157035101 - MLT2B1 LTR ERVL 0 520 2 427 175 25 0 chr3 70489483 70489563 -157035015 + MER58A DNA MER1_type 39 120 0 1346 139 68 48 chr3 70489575 70489884 -157034694 + MER33 DNA MER1_type 6 320 -4 4044 176 28 41 chr3 70490233 70491562 -157033016 + L1MB5 LINE L1 4838 6166 -8 313 238 0 48 chr3 70491697 70491802 -157032776 + LTR67 LTR ERVL 456 555 -2 508 306 8 8 chr3 70491819 70491953 -157032625 + MIR3 SINE MIR 38 171 -37 2367 148 36 5 chr3 70492263 70492675 -157031903 - MSTA LTR MaLR -3 425 1 22 56 0 0 chr3 70492870 70492906 -157031672 + AT_rich Low_complexity Low_complexity 1 36 0 2392 87 0 0 chr3 70493161 70493470 -157031108 - AluY SINE Alu -2 309 1 229 288 212 17 chr3 70493525 70493643 -157030935 + MIR SINE MIR 13 153 -109 349 200 0 0 chr3 70493643 70493708 -157030870 - MER113 DNA MER1_type? -1 520 456 21 0 0 0 chr3 70493753 70493774 -157030804 + AT_rich Low_complexity Low_complexity 1 21 0 1836 192 39 10 chr3 70493784 70494169 -157030409 + MSTD LTR MaLR 1 396 0 307 205 39 47 chr3 70494234 70494361 -157030217 + L1MC5 LINE L1 7094 7219 -742 296 278 49 48 chr3 70494681 70495060 -157029518 + L1MC4 LINE L1 7485 7966 -76 627 208 39 67 chr3 70495060 70495238 -157029340 - MER45A DNA AcHobo -4 174 2 296 278 49 48 chr3 70495238 70495274 -157029304 + L1MC4 LINE L1 7966 8000 -42 21 0 0 0 chr3 70495327 70495348 -157029230 + AT_rich Low_complexity Low_complexity 1 21 0 189 315 19 0 chr3 70495414 70495468 -157029110 + MIR SINE MIR 189 243 -19 2968 77 7 2 chr3 70495719 70496122 -157028456 + L1PA7 LINE L1 5749 6153 -1 2091 117 7 0 chr3 70497358 70497649 -157026929 + AluSc SINE Alu 1 293 -16 299 287 122 39 chr3 70498308 70498538 -157026040 + MLT1J2 LTR MaLR 199 447 -3 429 221 16 16 chr3 70498674 70498796 -157025782 + L1MC5 LINE L1 7790 7911 -50 2110 128 0 3 chr3 70498816 70499113 -157025465 + AluSx SINE Alu 1 296 -16 37541 74 7 8 chr3 70499241 70505389 -157019189 + L1PA5 LINE L1 1 6146 -8 235 244 67 0 chr3 70505663 70505753 -157018825 + L1MC5 LINE L1 7260 7355 -606 1220 203 68 66 chr3 70505761 70506274 -157018304 + MER39 LTR ERV1 6 687 -20 708 241 55 78 chr3 70506358 70506831 -157017747 + L1MC5 LINE L1 7452 7913 -48 389 216 69 35 chr3 70506930 70507046 -157017532 - HsTC2 DNA Tc2 -322 1576 1281 449 217 42 17 chr3 70507059 70507179 -157017399 - HsTC2 DNA Tc2 -1752 146 24 1498 160 84 0 chr3 70507303 70507602 -157016976 - AluJb SINE Alu 0 321 1 325 352 45 11 chr3 70508309 70508485 -157016093 - MIR SINE MIR -58 204 23 662 219 246 0 chr3 70508577 70508792 -157015786 - MER5C DNA MER1_type -56 268 1 2288 94 3 10 chr3 70509430 70509728 -157014850 + AluSp SINE Alu 1 296 -17 230 255 226 10 chr3 70510958 70511060 -157013518 + L2 LINE L2 2933 3056 -216 207 0 0 0 chr3 70511143 70511166 -157013412 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1418 114 53 11 chr3 70511896 70512158 -157012420 - L1MA2 LINE L1 0 6304 6032 962 84 15 0 chr3 70512198 70512329 -157012249 + BC200 scRNA scRNA 5 137 -63 672 279 106 15 chr3 70512448 70512713 -157011865 - L2 LINE L2 -82 3231 2943 525 289 115 14 chr3 70514007 70514225 -157010353 + MIR SINE MIR 12 251 -11 1798 140 204 6 chr3 70514469 70514826 -157009752 + MSTA LTR MaLR 1 428 0 644 298 31 0 chr3 70514852 70515013 -157009565 - MIR SINE MIR -85 177 12 249 139 0 0 chr3 70515407 70515450 -157009128 + (T)n Simple_repeat Simple_repeat 1 43 0 3080 162 26 24 chr3 70515845 70516425 -157008153 + MER6A DNA MER2_type 25 605 0 22 35 0 0 chr3 70517444 70517473 -157007105 + AT_rich Low_complexity Low_complexity 1 29 0 229 139 69 10 chr3 70517536 70517637 -157006941 + (TTTAA)n Simple_repeat Simple_repeat 4 110 0 329 290 30 30 chr3 70517655 70517755 -157006823 - MIR SINE MIR -162 100 1 21 36 0 0 chr3 70518322 70518350 -157006228 + AT_rich Low_complexity Low_complexity 1 28 0 2081 68 12 0 chr3 70519070 70519322 -157005256 + AluY SINE Alu 39 293 -18 353 257 230 20 chr3 70519347 70519499 -157005079 - MIR SINE MIR -76 186 3 21 0 0 0 chr3 70519512 70519533 -157005045 + AT_rich Low_complexity Low_complexity 1 21 0 415 238 119 89 chr3 70519671 70519940 -157004638 - MER102a DNA MER1_type 0 330 54 1004 308 39 49 chr3 70519994 70520607 -157003971 + MLT1L LTR MaLR 1 607 -8 312 27 0 0 chr3 70521323 70521360 -157003218 + (CA)n Simple_repeat Simple_repeat 2 38 0 209 246 16 16 chr3 70521488 70521549 -157003029 - MIR3 SINE MIR -1 207 147 400 292 73 62 chr3 70521818 70521968 -157002610 - MLT1J LTR MaLR -44 467 320 1754 219 20 13 chr3 70521968 70522361 -157002217 - MSTD LTR MaLR 0 396 1 400 292 73 62 chr3 70522361 70522386 -157002192 - MLT1J LTR MaLR -191 320 297 2115 150 0 3 chr3 70522386 70522699 -157001879 + AluSq SINE Alu 1 312 -1 400 292 73 62 chr3 70522699 70522782 -157001796 - MLT1J LTR MaLR -214 297 205 264 229 59 85 chr3 70522785 70522938 -157001640 - LTR16C LTR ERVL -2 489 341 463 284 6 37 chr3 70523230 70523276 -157001302 - MLT1J LTR MaLR -302 209 163 3055 206 8 32 chr3 70523276 70523896 -157000682 - MER77 LTR ERV1 0 605 1 463 284 6 37 chr3 70523896 70524011 -157000567 - MLT1J LTR MaLR -348 163 53 740 199 37 0 chr3 70524019 70524155 -157000423 - MER5A DNA MER1_type -2 187 47 1928 238 74 15 chr3 70524155 70524743 -156999835 - MLT1E2 LTR MaLR 0 601 1 215 174 43 0 chr3 70524748 70524794 -156999784 - MER5A DNA MER1_type -139 50 3 780 213 11 29 chr3 70525357 70525531 -156999047 - MER5B DNA MER1_type -2 176 6 264 288 0 15 chr3 70525767 70525833 -156998745 + L2 LINE L2 3202 3266 -6 1597 134 107 8 chr3 70525987 70526248 -156998330 - AluSx SINE Alu -25 287 1 483 291 48 57 chr3 70527310 70527756 -156996822 + L1ME4a LINE L1 5504 5944 -177 390 244 52 7 chr3 70527836 70527971 -156996607 + L1ME4a LINE L1 5969 6109 -12 364 247 43 11 chr3 70528091 70528184 -156996394 + MIR SINE MIR 20 115 -147 675 237 93 86 chr3 70528242 70528728 -156995850 + MLT1L LTR MaLR 22 510 -105 28 29 0 0 chr3 70528728 70528763 -156995815 + AT_rich Low_complexity Low_complexity 1 35 0 519 270 124 69 chr3 70530448 70530900 -156993678 + Charlie8 DNA MER1_type 1 231 -2186 27 62 0 0 chr3 70531749 70531797 -156992781 + AT_rich Low_complexity Low_complexity 1 48 0 214 361 118 28 chr3 70531801 70531945 -156992633 - L2 LINE L2 0 3272 3116 634 292 50 5 chr3 70531981 70532183 -156992395 - MIR SINE MIR 0 262 52 439 329 106 14 chr3 70532664 70532871 -156991707 - MIR SINE MIR -13 249 24 213 65 0 0 chr3 70533518 70533549 -156991029 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 258 296 122 9 chr3 70533809 70533924 -156990654 + L2 LINE L2 3169 3296 -17 274 306 225 12 chr3 70535101 70535274 -156989304 - MIR SINE MIR -16 246 37 221 315 0 0 chr3 70535699 70535753 -156988825 + (CA)n Simple_repeat Simple_repeat 1 54 0 34 0 0 0 chr3 70536028 70536062 -156988516 + AT_rich Low_complexity Low_complexity 1 34 0 189 352 76 29 chr3 70537380 70537485 -156987093 + L3b LINE CR1 1419 1528 -55 1042 171 21 34 chr3 70537691 70537930 -156986648 - MLT1C LTR MaLR -227 240 5 252 291 104 33 chr3 70537957 70538139 -156986439 + L2 LINE L2 2481 2675 -639 1155 261 101 33 chr3 70538155 70538930 -156985648 - L1ME3A LINE L1 -11 6159 5301 638 122 0 0 chr3 70538931 70539021 -156985557 - 5S rRNA rRNA -31 90 1 1811 250 86 41 chr3 70539025 70539217 -156985361 - L1ME3A LINE L1 -844 5302 5120 2269 134 10 72 chr3 70539217 70539365 -156985213 - L1MB8 LINE L1 -6 6172 6016 2513 37 7 0 chr3 70539365 70539665 -156984913 + AluY SINE Alu 1 302 -9 2269 134 10 72 chr3 70539665 70540014 -156984564 - L1MB8 LINE L1 -162 6016 5706 1811 250 86 41 chr3 70540014 70540705 -156983873 - L1ME3A LINE L1 -1026 5120 4379 2546 221 56 38 chr3 70540719 70541929 -156982649 - L1ME1 LINE L1 -5 6161 4889 1234 227 188 14 chr3 70541964 70542532 -156982046 - L1ME3A LINE L1 -1755 4391 3725 608 321 45 20 chr3 70542856 70543229 -156981349 + L2 LINE L2 2705 3096 -217 518 311 71 44 chr3 70543412 70543637 -156980941 + MIR SINE MIR 18 248 -14 200 194 0 0 chr3 70543736 70543772 -156980806 + (CA)n Simple_repeat Simple_repeat 1 36 0 1464 209 18 6 chr3 70545273 70545613 -156978965 - L1MB4 LINE L1 -5 6175 5832 577 348 52 52 chr3 70545622 70546024 -156978554 + L3 LINE CR1 1132 1533 -44 26 0 0 0 chr3 70546125 70546151 -156978427 + AT_rich Low_complexity Low_complexity 1 26 0 480 302 117 6 chr3 70547339 70547518 -156977060 + MIR SINE MIR 13 211 -51 1929 155 34 0 chr3 70547722 70548019 -156976559 + AluJb SINE Alu 1 307 -5 23 0 0 0 chr3 70548554 70548577 -156976001 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 70548899 70548920 -156975658 + AT_rich Low_complexity Low_complexity 1 21 0 348 289 81 64 chr3 70549058 70549293 -156975285 + MIR SINE MIR 21 259 -3 264 250 0 14 chr3 70549302 70549349 -156975229 + GA-rich Low_complexity Low_complexity 1 48 -23 1152 144 14 45 chr3 70549349 70549571 -156975007 + MER20 DNA MER1_type 1 215 -4 264 250 0 14 chr3 70549571 70549595 -156974983 + GA-rich Low_complexity Low_complexity 48 71 0 242 279 201 26 chr3 70549652 70549806 -156974772 + MIR SINE MIR 2 182 -80 198 0 0 0 chr3 70550181 70550203 -156974375 + (TG)n Simple_repeat Simple_repeat 2 23 0 417 313 66 45 chr3 70550349 70550547 -156974031 + MIR SINE MIR 34 235 -27 2889 174 50 2 chr3 70550548 70551072 -156973506 - MER44D DNA MER2_type -1 604 1 1689 118 118 0 chr3 70552886 70553157 -156971421 + AluSx SINE Alu 1 303 -9 1413 109 0 0 chr3 70553160 70553371 -156971207 + L1P LINE L1 1 211 -5935 11189 144 19 5 chr3 70553373 70555945 -156968633 - L1P4 LINE L1 -382 5786 3179 576 173 163 2 chr3 70555966 70556134 -156968444 - L1ME LINE L1 -600 5562 5374 * 26988 110 5 6 chr3 70556118 70561453 -156963125 - L1PA6 LINE L1 0 6805 1460 264 265 65 32 chr3 70561472 70561657 -156962921 - MER113 DNA MER1_type? -282 239 49 1510 136 36 26 chr3 70562278 70562586 -156961992 - L1MA9 LINE L1 -67 6245 5935 4331 134 27 17 chr3 70562595 70562712 -156961866 - L1MA8 LINE L1 -4 6287 6173 207 0 0 0 chr3 70562712 70562735 -156961843 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2117 117 3 0 chr3 70562735 70563017 -156961561 - AluSg SINE Alu -27 283 1 4331 134 27 17 chr3 70563017 70563712 -156960866 - L1MA8 LINE L1 -117 6174 5466 2409 137 13 0 chr3 70563716 70564109 -156960469 - MER57A LTR ERV1 -5 398 1 657 165 24 8 chr3 70564109 70564236 -156960342 - L1MA8 LINE L1 -822 5469 5341 636 212 72 52 chr3 70564399 70564592 -156959986 - L2 LINE L2 -2 3311 3115 372 273 68 23 chr3 70564862 70565038 -156959540 - MER117 DNA MER1_type -9 188 5 2721 145 13 7 chr3 70565268 70565723 -156958855 + LTR32 LTR ERVL 14 471 0 1046 296 75 56 chr3 70565864 70566712 -156957866 + L2 LINE L2 2412 3283 -30 259 347 24 16 chr3 70567201 70567325 -156957253 + MIR3 SINE MIR 68 192 -16 189 261 46 15 chr3 70567537 70567602 -156956976 + L2 LINE L2 3205 3271 -1 734 288 61 0 chr3 70567978 70568207 -156956371 - MIR SINE MIR -9 253 11 1669 189 0 21 chr3 70569051 70569367 -156955211 - AluJb SINE Alu 0 311 2 201 220 140 0 chr3 70569553 70569603 -156954975 - MIR SINE MIR -2 260 204 494 353 37 16 chr3 70569670 70569857 -156954721 + L2 LINE L2 3081 3271 -1 185 315 102 28 chr3 70569842 70569950 -156954628 - MIR SINE MIR -131 131 16 * 296 287 64 0 chr3 70570496 70570590 -156953988 + MIR SINE MIR 69 168 -94 257 270 90 45 chr3 70571166 70571255 -156953323 - L2 LINE L2 -50 3263 3171 190 313 23 75 chr3 70571518 70571732 -156952846 - L2 LINE L2 -706 2608 2406 298 191 36 71 chr3 70573879 70573963 -156950615 + L2 LINE L2 3232 3312 -1 639 316 84 0 chr3 70574644 70574869 -156949709 + MIR SINE MIR 16 259 -3 2079 107 28 10 chr3 70575282 70575572 -156949006 - AluSx SINE Alu -17 295 1 2648 164 42 53 chr3 70575572 70576098 -156948480 + MLT2B1 LTR ERVL 1 520 0 348 314 58 74 chr3 70576123 70576381 -156948197 + MIR SINE MIR 8 261 -1 7823 133 14 9 chr3 70576714 70578094 -156946484 + L1P LINE L1 1055 2441 -3705 7076 47 8 2 chr3 70578102 70579569 -156945009 + L1PA7 LINE L1 4679 6150 -4 630 231 65 24 chr3 70579771 70579940 -156944638 + MER63A DNA MER1_type 4 179 -31 538 280 20 50 chr3 70580460 70580660 -156943918 + MER63A DNA MER1_type 6 199 -11 220 296 62 74 chr3 70581909 70582071 -156942507 - MIR SINE MIR -16 246 87 705 295 91 72 chr3 70582213 70582373 -156942205 - L2 LINE L2 -1 3312 3157 2046 149 32 16 chr3 70582373 70582742 -156941836 - THE1C LTR MaLR 0 375 1 705 295 91 72 chr3 70582742 70583345 -156941233 - L2 LINE L2 -156 3157 2534 1993 117 29 45 chr3 70583642 70583950 -156940628 + AluSx SINE Alu 1 303 -9 214 329 12 24 chr3 70584114 70584196 -156940382 - L2 LINE L2 -14 3299 3219 188 313 62 0 chr3 70584352 70584432 -156940146 + MIR SINE MIR 76 160 -102 247 343 64 14 chr3 70586072 70586212 -156938366 - L2 LINE L2 -18 3295 3149 264 308 85 32 chr3 70586853 70587042 -156937536 + MIR SINE MIR 24 220 -42 248 297 16 0 chr3 70587239 70587303 -156937275 + L2 LINE L2 3186 3250 -22 227 334 107 54 chr3 70588419 70589010 -156935568 - L2 LINE L2 -4 3268 2638 274 368 98 14 chr3 70589142 70589419 -156935159 + L2 LINE L2 3005 3304 -9 329 339 92 56 chr3 70589425 70589861 -156934717 - L2 LINE L2 -837 2477 2058 2120 94 0 18 chr3 70589861 70590147 -156934431 + AluSx SINE Alu 1 281 -31 375 23 0 0 chr3 70590147 70590191 -156934387 + (CA)n Simple_repeat Simple_repeat 1 44 0 329 339 92 56 chr3 70590191 70590251 -156934327 - L2 LINE L2 -1255 2059 1962 344 318 56 0 chr3 70590418 70590525 -156934053 - L2 LINE L2 -2 3311 3199 528 272 81 46 chr3 70590680 70591026 -156933552 - LTR16C LTR ERVL -9 482 125 461 240 89 20 chr3 70591412 70591558 -156933020 - MIR SINE MIR -1 261 106 327 49 0 0 chr3 70591642 70591683 -156932895 + (CA)n Simple_repeat Simple_repeat 2 42 0 27 0 0 0 chr3 70591799 70591826 -156932752 + AT_rich Low_complexity Low_complexity 1 27 0 331 331 25 16 chr3 70592733 70592854 -156931724 + L2 LINE L2 3149 3270 -2 285 333 33 66 chr3 70593232 70593475 -156931103 + L2 LINE L2 2830 3064 -208 398 135 14 14 chr3 70593697 70593771 -156930807 - MLT1K LTR MaLR -4 584 511 239 228 0 69 chr3 70593771 70593798 -156930780 - LTR67 LTR ERVL -4 553 460 812 220 65 5 chr3 70594010 70594196 -156930382 + MIR SINE MIR 1 197 -65 21 0 0 0 chr3 70595002 70595023 -156929555 + AT_rich Low_complexity Low_complexity 1 21 0 2150 76 0 0 chr3 70595090 70595352 -156929226 - AluY SINE Alu -13 298 37 592 126 0 0 chr3 70595421 70595508 -156929070 + MLT1A2 LTR MaLR 1 87 -287 514 281 35 29 chr3 70596115 70596286 -156928292 + MIR SINE MIR 2 173 -89 180 309 202 0 chr3 70596563 70596657 -156927921 + L2 LINE L2 3157 3269 -3 189 242 97 16 chr3 70597695 70597757 -156926821 - L2 LINE L2 -808 2506 2440 22 0 0 0 chr3 70598172 70598194 -156926384 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr3 70598711 70598748 -156925830 + AT_rich Low_complexity Low_complexity 1 37 0 212 189 67 22 chr3 70599365 70599455 -156925123 + (TATATG)n Simple_repeat Simple_repeat 6 99 0 2124 117 0 0 chr3 70599643 70599948 -156924630 + AluSx SINE Alu 1 305 0 4490 181 37 15 chr3 70600093 70601974 -156922604 - L1MB7 LINE L1 -11 6173 4247 1577 247 41 6 chr3 70604285 70604770 -156919808 - L1ME3 LINE L1 -10 6152 5651 278 186 0 34 chr3 70605382 70605441 -156919137 + MER94 DNA DNA 1 57 -77 78 30 0 0 chr3 70605441 70605540 -156919038 + AT_rich Low_complexity Low_complexity 1 99 0 26 0 0 0 chr3 70605621 70605647 -156918931 + AT_rich Low_complexity Low_complexity 1 26 0 1807 140 43 7 chr3 70605656 70605935 -156918643 + AluJo SINE Alu 1 289 -23 360 372 55 0 chr3 70606109 70606273 -156918305 - L2 LINE L2 -1 3312 3140 783 126 0 59 chr3 70606396 70606531 -156918047 - FLAM_C SINE Alu -6 127 1 1215 249 77 8 chr3 70606550 70606912 -156917666 + MER20B DNA MER1_type 113 499 -284 1899 140 19 50 chr3 70607623 70607944 -156916634 - AluSx SINE Alu -1 311 1 567 225 67 0 chr3 70607983 70608161 -156916417 + MER20B DNA MER1_type 515 704 -79 540 332 29 57 chr3 70608656 70608923 -156915655 - L2 LINE L2 -455 2859 2601 2290 110 0 0 chr3 70608923 70609223 -156915355 + AluY SINE Alu 1 300 -11 540 332 29 57 chr3 70609223 70609271 -156915307 - L2 LINE L2 -713 2601 2553 353 209 74 49 chr3 70611535 70611698 -156912880 - L1MC5 LINE L1 -44 7917 7751 319 122 0 0 chr3 70611732 70611781 -156912797 + MER68 LTR ERV1 1 49 -513 2906 170 18 2 chr3 70611857 70612362 -156912216 + MER68 LTR ERV1 50 562 0 332 252 52 37 chr3 70612480 70612615 -156911963 + L2 LINE L2 3117 3253 -60 206 231 0 58 chr3 70612971 70613023 -156911555 + MER5A DNA MER1_type 141 189 0 406 274 33 20 chr3 70613468 70613621 -156910957 - MER90 LTR ERV1 0 614 460 230 269 48 19 chr3 70613795 70613899 -156910679 + L1ME LINE L1 5665 5771 -391 25 31 0 0 chr3 70614031 70614063 -156910515 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr3 70615183 70615208 -156909370 + AT_rich Low_complexity Low_complexity 1 25 0 349 281 185 0 chr3 70615389 70615524 -156909054 - MER91A DNA MER1_type -33 163 4 281 301 10 113 chr3 70616157 70616360 -156908218 - MER5A DNA MER1_type -1 188 7 2170 106 3 3 chr3 70617266 70617559 -156907019 - AluY SINE Alu -18 293 1 1449 161 51 58 chr3 70618650 70619079 -156905499 + LTR37A LTR ERV1 1 426 0 538 265 131 62 chr3 70619141 70619499 -156905079 + L2 LINE L2 2920 3302 -11 1364 235 71 49 chr3 70619499 70620012 -156904566 + MER39 LTR ERV1 1 585 0 607 195 161 27 chr3 70620367 70620516 -156904062 + MER5A DNA MER1_type 7 175 -14 403 272 16 41 chr3 70620528 70620691 -156903887 + MIR SINE MIR 23 185 -62 5255 127 15 2 chr3 70620693 70621559 -156903019 - L1PA16 LINE L1 0 6166 5290 2147 125 13 3 chr3 70621608 70621912 -156902666 + AluSx SINE Alu 1 307 -5 311 228 9 114 chr3 70622305 70622419 -156902159 - MIR3 SINE MIR -92 116 15 310 248 62 106 chr3 70622794 70622955 -156901623 - L2 LINE L2 -1 3312 3159 29 28 0 0 chr3 70623284 70623320 -156901258 + AT_rich Low_complexity Low_complexity 1 36 0 2192 122 26 0 chr3 70623410 70623714 -156900864 + AluSx SINE Alu 1 312 0 283 156 0 39 chr3 70623717 70623794 -156900784 + A-rich Low_complexity Low_complexity 5 78 0 1096 241 59 0 chr3 70624088 70624391 -156900187 + MER58B DNA MER1_type 21 341 0 1177 183 108 48 chr3 70625144 70625544 -156899034 + LTR37A LTR ERV1 1 424 -2 1631 169 91 48 chr3 70625777 70626215 -156898363 - MER31B LTR ERV1 -9 457 1 3766 83 8 0 chr3 70626438 70626956 -156897622 - L1PA13 LINE L1 -3 6160 5639 2480 110 15 2 chr3 70627042 70627513 -156897065 - L1PA13 LINE L1 -532 5631 5157 440 232 261 7 chr3 70627798 70627940 -156896638 + MER5A DNA MER1_type 9 186 -3 452 320 87 50 chr3 70628251 70628573 -156896005 + L1MC4a LINE L1 5740 6073 -1735 207 333 14 0 chr3 70628692 70628761 -156895817 - L3 LINE CR1 -65 1512 1443 220 271 146 0 chr3 70628862 70628958 -156895620 - L3 LINE CR1 -243 1334 1225 424 283 100 43 chr3 70628971 70629250 -156895328 - MER102b DNA MER1_type -20 321 27 212 288 99 63 chr3 70630972 70631083 -156893495 + MIR SINE MIR 34 148 -60 1176 174 14 157 chr3 70631552 70631978 -156892600 + MLT1A1 LTR MaLR 1 365 0 281 190 30 100 chr3 70632790 70632890 -156891688 + MER69 DNA AcHobo 1 93 -1133 2484 70 0 6 chr3 70632960 70633272 -156891306 + AluY SINE Alu 1 310 -1 616 174 0 8 chr3 70633290 70633411 -156891167 + MER69 DNA AcHobo 2403 2522 -4 377 247 59 53 chr3 70634229 70634399 -156890179 - MIR SINE MIR 0 262 92 2230 123 3 3 chr3 70635065 70635374 -156889204 - AluSc SINE Alu 0 309 1 509 201 78 141 chr3 70635412 70635496 -156889082 + L1ME3A LINE L1 5853 5941 -229 1700 186 17 10 chr3 70635496 70635797 -156888781 + AluJo SINE Alu 3 305 -7 509 201 78 141 chr3 70635797 70636046 -156888532 + L1ME3A LINE L1 5941 6165 -5 29 28 0 0 chr3 70636992 70637028 -156887550 + AT_rich Low_complexity Low_complexity 1 36 0 380 221 13 130 chr3 70638366 70638597 -156885981 + MER113 DNA MER1_type? 7 210 -311 447 276 26 0 chr3 70639598 70639714 -156884864 + MIR SINE MIR 74 192 -70 400 248 57 32 chr3 70641786 70641943 -156882635 + L1ME4a LINE L1 5950 6110 -11 184 192 0 77 chr3 70643213 70643265 -156881313 - L2 LINE L2 0 3313 3266 24249 39 5 0 chr3 70643393 70647159 -156877419 + L1PA4 LINE L1 2383 6152 -3 1792 151 210 23 chr3 70647206 70647644 -156876934 + MLT2B1 LTR ERVL 1 520 0 712 254 79 51 chr3 70647950 70648344 -156876234 + MLT1L LTR MaLR 149 553 -62 263 258 0 0 chr3 70648634 70648696 -156875882 + MLT1L LTR MaLR 544 605 -10 1997 161 81 54 chr3 70649843 70650495 -156874083 - MER39 LTR ERV1 0 707 1 321 207 0 0 chr3 70651493 70651575 -156873003 + (ATG)n Simple_repeat Simple_repeat 2 83 0 357 304 108 7 chr3 70651586 70651734 -156872844 + MER5A DNA MER1_type 1 163 -26 652 287 24 0 chr3 70651752 70651916 -156872662 + MIR SINE MIR 7 174 -88 439 264 46 30 chr3 70651953 70652150 -156872428 + HAL1 LINE L1 2015 2214 -293 383 282 52 28 chr3 70652180 70652393 -156872185 + HAL1 LINE L1 2290 2507 0 816 304 87 5 chr3 70652706 70653108 -156871470 - LTR33 LTR ERVL -86 435 1 228 67 0 0 chr3 70653124 70653154 -156871424 + (TTG)n Simple_repeat Simple_repeat 2 31 0 589 258 0 38 chr3 70653272 70653477 -156871101 - MIR SINE MIR -48 214 19 312 204 109 58 chr3 70654197 70654334 -156870244 - LTR67 LTR ERVL -2 555 412 378 0 0 0 chr3 70654963 70655005 -156869573 + (ATG)n Simple_repeat Simple_repeat 2 43 0 698 269 52 5 chr3 70655028 70655240 -156869338 - MIR SINE MIR -11 251 30 429 256 0 0 chr3 70657997 70658122 -156866456 + (TA)n Simple_repeat Simple_repeat 2 126 0 381 155 0 0 chr3 70658122 70658180 -156866398 + (CA)n Simple_repeat Simple_repeat 1 58 0 1139 167 26 26 chr3 70658206 70658475 -156866103 + SVA Other Other 452 720 -666 386 299 92 24 chr3 70658576 70658783 -156865795 + L1MEc LINE L1 1256 1476 -4920 2167 107 3 7 chr3 70658840 70659139 -156865439 + AluY SINE Alu 4 301 -10 1327 101 0 0 chr3 70659139 70659308 -156865270 + AluSq SINE Alu 134 302 -11 24 0 0 0 chr3 70660146 70660170 -156864408 + AT_rich Low_complexity Low_complexity 1 24 0 465 246 176 20 chr3 70660182 70660348 -156864230 + L1MC5 LINE L1 6766 6905 -1056 1873 117 14 24 chr3 70660348 70660638 -156863940 + AluSq SINE Alu 1 287 -26 465 246 176 20 chr3 70660638 70660891 -156863687 + L1MC5 LINE L1 6905 7182 -779 440 269 64 38 chr3 70661052 70661345 -156863233 + L1ME3A LINE L1 5662 5962 -208 250 255 104 0 chr3 70661831 70661937 -156862641 + L1MEc LINE L1 2279 2395 -3820 40023 62 7 1 chr3 70662013 70668131 -156856447 - L1PA4 LINE L1 -3 6152 1 420 200 21 0 chr3 70668325 70668420 -156856158 - MER34 LTR ERV1 -443 99 3 218 260 302 10 chr3 70669730 70669826 -156854752 - MER5B DNA MER1_type -54 124 1 247 311 28 9 chr3 70670063 70670169 -156854409 - MLT1K LTR MaLR -352 236 129 328 228 51 0 chr3 70670214 70670293 -156854285 - MER91C DNA MER1_type -46 94 12 356 227 0 13 chr3 70670665 70670740 -156853838 - MER5A DNA MER1_type -103 86 13 207 0 0 0 chr3 70670826 70670849 -156853729 + (TA)n Simple_repeat Simple_repeat 1 23 0 297 235 118 10 chr3 70670849 70670951 -156853627 + MIR SINE MIR 94 206 -56 556 301 105 51 chr3 70670960 70671387 -156853191 - L2 LINE L2 -97 3216 2767 253 273 41 58 chr3 70671895 70672016 -156852562 - MIR3 SINE MIR -23 185 67 248 318 12 12 chr3 70672114 70672199 -156852379 + L2 LINE L2 3134 3218 -54 383 228 24 71 chr3 70672449 70672576 -156852002 + L2 LINE L2 3163 3283 -30 722 273 29 11 chr3 70672752 70672950 -156851628 + MIR SINE MIR 48 246 -16 185 222 0 0 chr3 70672919 70672955 -156851623 + L2 LINE L2 3261 3296 -17 * 487 226 131 0 chr3 70673922 70674059 -156850519 + MIR3 SINE MIR 43 197 -11 256 317 218 15 chr3 70674112 70674314 -156850264 + MIR SINE MIR 20 262 0 375 134 61 37 chr3 70674333 70674497 -156850081 + (TA)n Simple_repeat Simple_repeat 2 169 0 239 183 84 14 chr3 70674517 70674588 -156849990 + MIR SINE MIR 109 184 -78 1270 102 6 0 chr3 70674955 70675121 -156849457 - AluSg/x SINE Alu -17 295 129 831 285 9 0 chr3 70675250 70675464 -156849114 - MIR SINE MIR -26 236 21 251 216 67 118 chr3 70675987 70676242 -156848336 - L1ME4a LINE L1 -41 6080 5839 233 204 19 0 chr3 70676357 70676411 -156848167 - L1ME4a LINE L1 -448 5673 5619 244 203 211 39 chr3 70676661 70676789 -156847789 - MLT1L LTR MaLR 0 615 466 272 227 27 0 chr3 70676999 70677074 -156847504 - L1ME4a LINE L1 -74 6047 5971 212 288 0 30 chr3 70677147 70677213 -156847365 + L2 LINE L2 3209 3272 0 604 271 29 58 chr3 70677224 70677534 -156847044 - L1ME4a LINE L1 -253 5868 5568 265 206 16 0 chr3 70677721 70677784 -156846794 - L1MC4a LINE L1 -1865 5943 5880 2066 139 0 10 chr3 70678265 70678568 -156846010 - AluSx SINE Alu -12 300 1 445 190 111 90 chr3 70678969 70679076 -156845502 + MER34 LTR ERV1 226 329 -213 3226 143 76 49 chr3 70679076 70679749 -156844829 - LTR8 LTR ERV1 0 691 1 445 190 111 90 chr3 70679749 70679930 -156844648 + MER34 LTR ERV1 329 520 -22 222 288 0 0 chr3 70680596 70680655 -156843923 + MER5B DNA MER1_type 1 59 -119 293 182 18 0 chr3 70680667 70680722 -156843856 - MER5B DNA MER1_type 0 178 123 249 146 0 0 chr3 70680800 70680841 -156843737 - MER5B DNA MER1_type -136 42 2 1006 224 82 72 chr3 70681026 70681564 -156843014 + MER39 LTR ERV1 1 707 0 737 266 23 14 chr3 70681760 70681974 -156842604 - MIR SINE MIR -33 229 14 317 227 201 35 chr3 70682015 70682162 -156842416 + MER5A DNA MER1_type 4 187 -2 996 115 26 26 chr3 70682244 70682379 -156842199 - L1MA8 LINE L1 -7 6284 6147 4183 90 0 0 chr3 70682379 70682933 -156841645 + MER41A LTR ERV1 1 554 0 996 115 26 26 chr3 70682933 70682988 -156841590 - L1MA8 LINE L1 -143 6148 6094 2313 54 3 22 chr3 70683120 70683434 -156841144 + L1PA8 LINE L1 5865 6172 0 185 211 84 28 chr3 70683651 70683722 -156840856 + L2 LINE L2 3234 3308 -5 320 291 133 19 chr3 70684346 70684504 -156840074 - MIR SINE MIR -13 249 74 290 177 65 0 chr3 70685448 70685510 -156839068 + MIR3 SINE MIR 122 187 -21 526 281 29 7 chr3 70685730 70685869 -156838709 + MIR3 SINE MIR 10 151 -57 507 287 58 11 chr3 70686083 70686257 -156838321 + MIR SINE MIR 23 204 -58 531 0 0 0 chr3 70686481 70686540 -156838038 + (CA)n Simple_repeat Simple_repeat 2 60 0 568 299 37 45 chr3 70688491 70688735 -156835843 + L2 LINE L2 3044 3285 -28 183 321 142 9 chr3 70688852 70688958 -156835620 - L2 LINE L2 -5 3267 3148 1385 308 51 8 chr3 70690038 70690506 -156834072 - LTR16C LTR ERVL -3 488 1 350 240 154 57 chr3 70690964 70691081 -156833497 + L2 LINE L2 3120 3261 -52 2277 107 3 0 chr3 70691081 70691380 -156833198 + AluSg SINE Alu 1 300 -10 350 240 154 57 chr3 70691380 70691437 -156833141 + L2 LINE L2 3261 3311 -2 184 283 50 0 chr3 70691686 70691746 -156832832 - MIR3 SINE MIR -2 206 144 33 73 0 0 chr3 70691804 70691872 -156832706 + AT_rich Low_complexity Low_complexity 1 68 0 202 257 108 0 chr3 70692527 70692601 -156831977 - L2 LINE L2 -18 3295 3214 1272 230 51 111 chr3 70692953 70693487 -156831091 - L2 LINE L2 -6 3307 2780 609 222 262 8 chr3 70693612 70693860 -156830718 - MER46C DNA MER2_type -26 312 2 23 0 0 0 chr3 70694326 70694349 -156830229 + AT_rich Low_complexity Low_complexity 1 23 0 3846 59 16 6 chr3 70694886 70695398 -156829180 - L1PA7 LINE L1 0 6154 5638 25632 134 29 81 chr3 70695401 70695788 -156828790 - L1P LINE L1 -1062 5084 4678 283 103 0 0 chr3 70695788 70695827 -156828751 + U2 snRNA snRNA 1 39 -149 25632 134 29 81 chr3 70695827 70700766 -156823812 - L1P LINE L1 -1468 4678 3 576 275 110 25 chr3 70701962 70702359 -156822219 + MLT1K LTR MaLR 141 588 0 491 299 302 3 chr3 70702521 70702819 -156821759 + L3 LINE CR1 1191 1577 0 1879 182 12 6 chr3 70702848 70703194 -156821384 - MER7A DNA MER2_type 0 346 1 270 374 74 26 chr3 70704204 70704554 -156820024 - L2 LINE L2 -338 2976 2610 669 223 147 68 chr3 70704614 70705143 -156819435 + L1ME4a LINE L1 5535 6105 -16 254 192 82 0 chr3 70705154 70705179 -156819399 + MER116 DNA Mariner 1 23 -57 1500 185 84 34 chr3 70705179 70705535 -156819043 + MLT1A2 LTR MaLR 1 374 0 254 192 82 0 chr3 70705535 70705582 -156818996 + MER116 DNA Mariner 23 79 -1 1287 167 43 1 chr3 70705861 70706340 -156818238 + MLT1F1 LTR MaLR 3 562 -5 1326 190 68 48 chr3 70706340 70706599 -156817979 + MER2 DNA MER2_type 1 270 -74 1981 156 13 0 chr3 70706599 70706901 -156817677 - AluJb SINE Alu -6 306 1 1326 190 68 48 chr3 70706901 70706978 -156817600 + MER2 DNA MER2_type 270 344 0 2165 102 0 0 chr3 70707409 70707684 -156816894 - AluSx SINE Alu -15 297 23 348 222 78 0 chr3 70708885 70708975 -156815603 + MIR SINE MIR 77 173 -89 3562 111 20 10 chr3 70709214 70709826 -156814752 - L1MA1 LINE L1 0 6302 5685 5814 143 6 2 chr3 70709932 70711602 -156812976 - L1MA1 LINE L1 -378 5924 4247 446 197 183 14 chr3 70712096 70712238 -156812340 + MIR SINE MIR 88 253 -9 1126 185 86 72 chr3 70712244 70712536 -156812042 - AluJo SINE Alu -5 297 2 809 162 0 0 chr3 70712562 70712679 -156811899 - FLAM_C SINE Alu -16 117 1 359 301 89 7 chr3 70712794 70712940 -156811638 - MLT1J LTR MaLR -114 397 240 1751 245 77 27 chr3 70712969 70713529 -156811049 - MLT1G1 LTR MaLR -2 593 6 1056 292 109 52 chr3 70713595 70714019 -156810559 - L2 LINE L2 -12 3301 2903 2019 146 7 0 chr3 70714019 70714320 -156810258 + AluSx SINE Alu 1 303 -9 1056 292 109 52 chr3 70714320 70714697 -156809881 - L2 LINE L2 -410 2903 2430 207 0 0 0 chr3 70715483 70715506 -156809072 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 294 29 0 0 chr3 70715505 70715540 -156809038 + (CA)n Simple_repeat Simple_repeat 2 36 0 218 238 0 0 chr3 70715571 70715613 -156808965 + (TA)n Simple_repeat Simple_repeat 1 42 0 1916 188 28 42 chr3 70715613 70716043 -156808535 + MSTA LTR MaLR 1 424 -4 195 42 0 0 chr3 70716046 70716070 -156808508 + (CA)n Simple_repeat Simple_repeat 1 24 0 522 242 147 11 chr3 70717134 70717324 -156807254 + MLT1F LTR MaLR 1 216 -351 975 183 75 5 chr3 70717324 70717537 -156807041 + MER34B LTR ERV1 1 228 -337 1644 149 67 3 chr3 70717614 70717943 -156806635 + MER34B LTR ERV1 216 565 0 1692 165 67 13 chr3 70717951 70718236 -156806342 + MLT1F LTR MaLR 211 516 -26 1655 129 0 0 chr3 70718236 70718468 -156806110 + AluSg SINE Alu 60 291 -19 1692 165 67 13 chr3 70718468 70718497 -156806081 + MLT1F LTR MaLR 516 542 0 1907 168 0 0 chr3 70718670 70718962 -156805616 + AluJo SINE Alu 2 293 -19 364 285 151 0 chr3 70719125 70719281 -156805297 - MIR SINE MIR -66 142 18 328 204 11 43 chr3 70721026 70721119 -156803459 + MLT1G1 LTR MaLR 490 579 -16 470 260 63 37 chr3 70721611 70721880 -156802698 + L1ME4a LINE L1 5670 5945 -176 * 852 247 38 67 chr3 70721876 70722209 -156802369 + L1MC/D LINE L1 5372 5692 -2116 1619 198 37 18 chr3 70722209 70722592 -156801986 + MLT1B LTR MaLR 1 390 0 852 247 38 67 chr3 70722592 70722675 -156801903 + L1MC/D LINE L1 5692 5776 -2032 279 54 0 0 chr3 70722696 70722733 -156801845 + (TG)n Simple_repeat Simple_repeat 2 38 0 1268 138 124 5 chr3 70722865 70723083 -156801495 + AluSq SINE Alu 11 254 -59 1185 242 131 31 chr3 70724706 70725193 -156799385 + MLT1H1 LTR MaLR 12 547 -8 279 239 22 33 chr3 70726409 70726501 -156798077 + MLT1K LTR MaLR 14 104 -484 408 355 107 8 chr3 70726511 70726773 -156797805 - L2 LINE L2 -570 2744 2457 1041 274 8 4 chr3 70726886 70727134 -156797444 + MIR SINE MIR 7 255 -7 4315 110 3 2 chr3 70727875 70728467 -156796111 + L1PA13 LINE L1 5571 6163 0 23 0 0 0 chr3 70729075 70729098 -156795480 + AT_rich Low_complexity Low_complexity 1 23 0 210 313 132 28 chr3 70729114 70729258 -156795320 - L2 LINE L2 -562 2752 2594 243 242 15 15 chr3 70729664 70729730 -156794848 + LTR67 LTR ERVL 490 555 -2 26 0 0 0 chr3 70729789 70729815 -156794763 + AT_rich Low_complexity Low_complexity 1 26 0 198 0 0 0 chr3 70729937 70729959 -156794619 + (A)n Simple_repeat Simple_repeat 1 22 0 1119 155 82 0 chr3 70729979 70730186 -156794392 - Tigger2 DNA MER2_type 0 2718 2495 319 184 97 48 chr3 70731186 70731289 -156793289 - L1M4 LINE L1 -1426 4720 4613 * 6080 88 6 1 chr3 70731269 70732083 -156792495 + L1PA13 LINE L1 5343 6160 -3 828 69 0 0 chr3 70732125 70732227 -156792351 - AluSg/x SINE Alu -12 297 196 676 206 27 0 chr3 70732227 70732373 -156792205 - L1M4 LINE L1 -2437 3709 3560 499 95 0 0 chr3 70732500 70732574 -156792004 - L1P LINE L1 -841 5305 5232 2485 76 0 19 chr3 70732607 70732924 -156791654 - AluY SINE Alu 0 311 1 854 262 12 35 chr3 70733472 70733728 -156790850 + MIR SINE MIR 13 262 0 317 280 101 58 chr3 70734398 70734605 -156789973 - LTR16C LTR ERVL -91 400 185 195 250 58 125 chr3 70735144 70735264 -156789314 + MIR SINE MIR 30 141 -67 37 0 0 0 chr3 70735269 70735306 -156789272 + AT_rich Low_complexity Low_complexity 1 37 0 190 340 0 0 chr3 70735309 70735359 -156789219 + MIR3 SINE MIR 148 197 -11 516 217 8 58 chr3 70735729 70735849 -156788729 + MER94 DNA DNA 8 121 -13 5317 131 1 0 chr3 70736100 70736874 -156787704 + L1P LINE L1 235 1009 -5137 * 17669 46 108 4 chr3 70736855 70739485 -156785093 + L1P2 LINE L1 2696 5617 -537 1849 112 0 4 chr3 70739459 70739728 -156784850 + L1PA5 LINE L1 5887 6154 0 * 922 149 4 124 chr3 70740336 70740578 -156784000 - AluSc SINE Alu -7 302 90 1164 194 153 8 chr3 70740680 70740928 -156783650 + MLT1D LTR MaLR 214 497 -8 1790 185 3 3 chr3 70741055 70741363 -156783215 + AluJo SINE Alu 1 308 -4 21 0 0 0 chr3 70741391 70741412 -156783166 + AT_rich Low_complexity Low_complexity 1 21 0 269 146 0 0 chr3 70741994 70742042 -156782536 + MER20 DNA MER1_type 114 161 -58 1757 121 21 94 chr3 70742186 70742517 -156782061 + AluYb8 SINE Alu 1 307 -11 3016 150 14 6 chr3 70743109 70743596 -156780982 - L1MB3 LINE L1 -2 6181 5691 349 327 9 0 chr3 70743876 70743986 -156780592 - MIR SINE MIR -13 249 139 590 279 144 0 chr3 70743991 70744213 -156780365 + MIR SINE MIR 7 260 -2 245 413 8 0 chr3 70744469 70744595 -156779983 + MIR3 SINE MIR 30 156 -52 1943 128 3 51 chr3 70744708 70745021 -156779557 - AluSx SINE Alu -14 298 1 283 339 73 8 chr3 70745136 70745260 -156779318 + L2 LINE L2 2917 3048 -224 1201 43 0 0 chr3 70746084 70746222 -156778356 + L1PA4 LINE L1 6010 6147 -8 572 260 8 8 chr3 70746239 70746366 -156778212 + MER5A DNA MER1_type 61 187 -2 759 145 7 103 chr3 70746426 70746571 -156778007 + FLAM_C SINE Alu 2 132 -1 1564 171 17 30 chr3 70746594 70746892 -156777686 + AluJo SINE Alu 5 298 -14 182 319 31 88 chr3 70747536 70747696 -156776882 - L2 LINE L2 -252 3061 2911 2380 91 0 28 chr3 70747814 70748134 -156776444 + AluY SINE Alu 1 311 0 1817 160 27 7 chr3 70748147 70748447 -156776131 + AluJb SINE Alu 2 307 -5 802 87 31 0 chr3 70748447 70748574 -156776004 + (GGGAA)n Simple_repeat Simple_repeat 2 132 0 519 164 23 8 chr3 70748583 70748711 -156775867 + GA-rich Low_complexity Low_complexity 2 131 0 2448 102 54 25 chr3 70748773 70749127 -156775451 - THE1B LTR MaLR 0 364 1 1506 180 99 13 chr3 70749178 70749520 -156775058 + L1MB8 LINE L1 5802 6178 0 632 273 187 55 chr3 70750246 70750759 -156773819 - MLT1K LTR MaLR -7 581 1 468 279 76 13 chr3 70750913 70751071 -156773507 + LTR33 LTR ERVL 9 176 -345 766 195 31 13 chr3 70751147 70751306 -156773272 + LTR33 LTR ERVL 358 519 -2 387 221 58 0 chr3 70751350 70751436 -156773142 - MIR SINE MIR -58 204 114 218 243 14 54 chr3 70751442 70751516 -156773062 + L2 LINE L2 2632 2702 -612 2750 100 19 5 chr3 70751603 70751973 -156772605 - THE1C LTR MaLR 0 375 1 204 349 60 0 chr3 70752080 70752163 -156772415 + L2 LINE L2 3003 3090 -182 409 345 115 6 chr3 70752220 70752385 -156772193 + L2 LINE L2 3088 3270 -2 308 264 55 27 chr3 70752587 70752697 -156771881 + L1MD3 LINE L1 6397 6509 -1486 891 216 10 5 chr3 70752711 70752919 -156771659 + L1MD3 LINE L1 7773 7981 -14 394 293 242 42 chr3 70753029 70753364 -156771214 - L3 LINE CR1 -6 1571 1170 491 206 211 29 chr3 70753861 70754036 -156770542 - MIR SINE MIR -55 207 1 2267 112 0 0 chr3 70754037 70754332 -156770246 - AluSx SINE Alu -17 295 1 1097 179 0 0 chr3 70754546 70754725 -156769853 + FRAM SINE Alu 1 176 0 903 287 129 52 chr3 70754977 70755482 -156769096 + MLT1K LTR MaLR 4 547 -41 246 215 54 62 chr3 70755507 70755637 -156768941 + L2 LINE L2 3040 3168 -145 250 248 171 9 chr3 70755821 70755926 -156768652 + L2 LINE L2 3190 3311 -2 327 283 132 0 chr3 70756072 70756178 -156768400 - L2 LINE L2 -4 3268 3149 282 29 0 0 chr3 70756269 70756304 -156768274 + (TG)n Simple_repeat Simple_repeat 2 36 0 189 74 0 0 chr3 70756303 70756330 -156768248 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 * 296 148 16 0 chr3 70756826 70756887 -156767691 + CT-rich Low_complexity Low_complexity 3 64 0 492 227 22 124 chr3 70756894 70756945 -156767633 - L1ME1 LINE L1 -5 6161 6106 1875 135 0 0 chr3 70756945 70757228 -156767350 + AluSx SINE Alu 24 306 0 492 227 22 124 chr3 70757228 70757448 -156767130 - L1ME1 LINE L1 -60 6106 5917 2935 233 51 5 chr3 70757555 70758703 -156765875 - L1ME1 LINE L1 -563 5603 4360 1588 158 23 0 chr3 70759431 70759691 -156764887 + L1PA16 LINE L1 5897 6162 -4 2409 53 0 0 chr3 70759978 70760310 -156764268 - AluY SINE Alu 0 333 2 828 267 131 29 chr3 70760535 70761023 -156763555 + MLT1G LTR MaLR 8 567 0 1568 171 3 55 chr3 70761886 70762195 -156762383 - AluJb SINE Alu -16 296 4 224 241 60 36 chr3 70762265 70762348 -156762230 + L2 LINE L2 3188 3272 0 1535 86 0 5 chr3 70762645 70762871 -156761707 + AluSq SINE Alu 88 312 0 2251 98 0 3 chr3 70763907 70764204 -156760374 + AluSx SINE Alu 1 296 -16 239 279 74 49 chr3 70765495 70765617 -156758961 + L2 LINE L2 3146 3270 -2 189 0 0 0 chr3 70765860 70765881 -156758697 + (CA)n Simple_repeat Simple_repeat 2 22 0 1634 151 4 0 chr3 70765881 70766140 -156758438 - AluSx SINE Alu -38 274 15 3123 217 39 7 chr3 70766890 70767615 -156756963 + L1MB7 LINE L1 5437 6184 0 2043 128 0 16 chr3 70767626 70767932 -156756646 + AluSx SINE Alu 1 301 -11 6662 73 26 52 chr3 70769484 70771454 -156753124 - SVA Other Other -520 1386 13 5689 93 52 1 chr3 70772521 70773314 -156751264 - L1PA13 LINE L1 -24 6139 5307 887 279 125 51 chr3 70773357 70773902 -156750676 + MLT1K LTR MaLR 2 586 -2 441 328 45 11 chr3 70773909 70774086 -156750492 - MIR SINE MIR -74 188 6 559 301 52 26 chr3 70775225 70775454 -156749124 - MIR SINE MIR -24 238 4 467 194 19 0 chr3 70775530 70775638 -156748940 - L1MB4 LINE L1 0 6180 6071 320 276 30 0 chr3 70775760 70775894 -156748684 - L1M4 LINE L1 -860 5286 5149 406 361 1 12 chr3 70776274 70776458 -156748120 + MIR3 SINE MIR 15 192 -53 188 355 24 42 chr3 70776597 70776763 -156747815 - L2 LINE L2 -1405 1909 1747 292 107 18 0 chr3 70776857 70776913 -156747665 - L1MB7 LINE L1 0 6184 6128 279 263 51 156 chr3 70777089 70777433 -156747145 + MLT1K LTR MaLR 141 519 -69 2512 80 5 54 chr3 70777433 70777806 -156746772 + THE1A LTR MaLR 1 355 0 279 263 51 156 chr3 70777806 70777829 -156746749 + MLT1K LTR MaLR 519 452 -136 1390 247 15 9 chr3 70777829 70778161 -156746417 + MER58B DNA MER1_type 4 337 -4 279 263 51 156 chr3 70778161 70778260 -156746318 + MLT1K LTR MaLR 451 559 -29 892 209 6 0 chr3 70778386 70778558 -156746020 + MER45A DNA AcHobo 6 178 0 234 239 0 0 chr3 70779275 70779346 -156745232 + CT-rich Low_complexity Low_complexity 3 73 0 275 252 191 69 chr3 70779384 70779761 -156744817 - L1ME4a LINE L1 -11 6110 5688 22 35 0 0 chr3 70780512 70780541 -156744037 + AT_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr3 70780817 70780847 -156743731 + AT_rich Low_complexity Low_complexity 1 30 0 378 256 36 107 chr3 70780930 70781098 -156743480 + MIR SINE MIR 105 260 -2 519 132 0 0 chr3 70781111 70781202 -156743376 + (CAT)n Simple_repeat Simple_repeat 1 91 0 235 318 6 84 chr3 70782841 70782943 -156741635 + L2 LINE L2 2631 2739 -575 228 35 0 0 chr3 70782943 70782972 -156741606 + (TG)n Simple_repeat Simple_repeat 2 30 0 2340 71 44 0 chr3 70782972 70783266 -156741312 - AluSc SINE Alu -2 307 1 235 318 6 84 chr3 70783266 70783341 -156741237 + L2 LINE L2 2737 2795 -519 28 29 0 0 chr3 70783391 70783426 -156741152 + AT_rich Low_complexity Low_complexity 1 35 0 241 91 0 0 chr3 70783539 70783572 -156741006 + MER8 DNA MER2_type 207 239 0 201 315 0 0 chr3 70784180 70784234 -156740344 + L2 LINE L2 2714 2767 -547 256 355 11 0 chr3 70784589 70784682 -156739896 - L2 LINE L2 0 3272 3179 2149 42 0 45 chr3 70785019 70785307 -156739271 - AluY SINE Alu -36 275 1 286 226 37 0 chr3 70785350 70785430 -156739148 - MLT1K LTR MaLR -342 246 174 796 301 68 62 chr3 70785650 70785909 -156738669 - L2 LINE L2 -728 2586 2330 441 0 0 0 chr3 70785909 70785958 -156738620 + (TG)n Simple_repeat Simple_repeat 2 50 0 796 301 68 62 chr3 70785958 70786243 -156738335 - L2 LINE L2 -984 2330 2039 193 395 40 8 chr3 70786507 70786631 -156737947 + L2 LINE L2 3136 3263 -9 2740 142 65 74 chr3 70788206 70788763 -156735815 + MLT2B3 LTR ERVL 3 554 0 219 351 0 0 chr3 70788858 70788932 -156735646 + MIR SINE MIR 81 154 -108 958 200 76 51 chr3 70788936 70789291 -156735287 - MER96B DNA MER1_type? 0 417 54 232 280 27 0 chr3 70789476 70789551 -156735027 + LTR16C LTR ERVL 157 233 -258 466 225 18 0 chr3 70789604 70789715 -156734863 + MER96B DNA MER1_type? 6 118 -299 241 193 12 84 chr3 70789777 70789860 -156734718 + MER34B LTR ERV1 38 114 -451 2302 147 35 10 chr3 70792524 70792926 -156731652 - MLT2D LTR ERVL -2 412 1 595 318 33 9 chr3 70793262 70793473 -156731105 - MIR SINE MIR -45 217 2 295 324 88 0 chr3 70794390 70794492 -156730086 + L2 LINE L2 3202 3312 -1 466 254 119 0 chr3 70795688 70795806 -156728772 - MIR SINE MIR -111 151 20 4138 155 45 17 chr3 70795830 70796651 -156727927 - L1MB1 LINE L1 -44 6124 5281 239 186 0 17 chr3 70797086 70797145 -156727433 + (TA)n Simple_repeat Simple_repeat 1 58 0 458 167 167 86 chr3 70797429 70797627 -156726951 - LTR16C LTR ERVL 0 491 278 1029 157 17 11 chr3 70797628 70797806 -156726772 + MER5A DNA MER1_type 1 179 -10 454 278 29 16 chr3 70797980 70798121 -156726457 - MIR SINE MIR -54 154 2 21 36 0 0 chr3 70798787 70798815 -156725763 + AT_rich Low_complexity Low_complexity 1 28 0 445 256 34 8 chr3 70799013 70799130 -156725448 + MER5A DNA MER1_type 9 128 -61 * 533 304 94 36 chr3 70799114 70799338 -156725240 + MIR SINE MIR 24 260 -2 869 227 73 71 chr3 70800446 70800855 -156723723 + L1MC4 LINE L1 7593 8002 -40 324 298 158 18 chr3 70801528 70801699 -156722879 + MIR SINE MIR 1 195 -67 263 320 48 0 chr3 70801925 70802028 -156722550 + MIR SINE MIR 47 154 -108 734 220 100 123 chr3 70802292 70802331 -156722247 - L1ME3 LINE L1 -2 6164 6126 1842 111 28 4 chr3 70802331 70802584 -156721994 - AluSx SINE Alu -15 297 39 734 220 100 123 chr3 70802584 70802845 -156721733 - L1ME3 LINE L1 -40 6126 5872 219 36 0 0 chr3 70802848 70802876 -156721702 + (TG)n Simple_repeat Simple_repeat 2 29 0 815 143 0 8 chr3 70802926 70803052 -156721526 + FLAM_C SINE Alu 1 125 -18 184 360 101 14 chr3 70803980 70804119 -156720459 + L3 LINE CR1 246 396 -1181 394 312 110 78 chr3 70804573 70805117 -156719461 + L2 LINE L2 2697 3259 -13 231 296 37 12 chr3 70805720 70805801 -156718777 - MIR SINE MIR -105 103 21 410 304 64 8 chr3 70805807 70805932 -156718646 - L2 LINE L2 -1 3271 3140 580 315 36 23 chr3 70806153 70806461 -156718117 + LTR16C LTR ERVL 180 491 0 193 338 15 0 chr3 70807227 70807295 -156717283 + L2 LINE L2 3240 3308 -5 295 349 81 27 chr3 70808750 70809160 -156715418 + L2 LINE L2 2538 2969 -345 408 310 54 8 chr3 70809697 70809826 -156714752 - MIR SINE MIR -75 187 53 369 0 0 0 chr3 70810225 70810266 -156714312 + (TG)n Simple_repeat Simple_repeat 2 42 0 352 248 19 76 chr3 70810293 70810394 -156714184 + L1ME4a LINE L1 5974 6064 -57 2425 100 0 0 chr3 70810394 70810704 -156713874 - AluSx SINE Alu -2 310 1 352 248 19 76 chr3 70810704 70810759 -156713819 + L1ME4a LINE L1 6064 6121 0 1060 278 70 37 chr3 70810790 70811760 -156712818 + L1ME LINE L1 4742 5739 -423 1122 136 42 33 chr3 70811962 70812176 -156712402 + MER20 DNA MER1_type 1 216 -3 281 269 202 0 chr3 70813800 70813904 -156710674 - MIR SINE MIR -130 132 8 206 360 107 7 chr3 70813936 70814086 -156710492 + L2 LINE L2 2808 2972 -300 511 174 11 0 chr3 70814760 70814852 -156709726 + MER3 DNA MER1_type 1 93 -116 283 345 93 43 chr3 70815126 70815189 -156709389 + L2 LINE L2 3022 3080 -233 414 0 0 0 chr3 70815189 70815235 -156709343 + (TG)n Simple_repeat Simple_repeat 1 46 0 1818 137 3 32 chr3 70815235 70815519 -156709059 - AluSx SINE Alu -33 279 4 283 345 93 43 chr3 70815519 70815732 -156708846 + L2 LINE L2 3079 3313 0 739 314 57 59 chr3 70816188 70816702 -156707876 + L2 LINE L2 2776 3271 -1 295 214 107 36 chr3 70816995 70817079 -156707499 - MIR SINE MIR -145 117 28 385 243 111 48 chr3 70818154 70818343 -156706235 - MIR SINE MIR -6 256 56 287 314 42 8 chr3 70818747 70818865 -156705713 - MIR3 SINE MIR -3 205 84 1965 150 0 0 chr3 70818937 70819224 -156705354 + AluJo SINE Alu 21 307 -5 2613 221 40 1 chr3 70819239 70819889 -156704689 - L1ME1 LINE L1 -5 6161 5487 2409 61 3 35 chr3 70820009 70820321 -156704257 - AluY SINE Alu -9 302 1 927 263 28 12 chr3 70820795 70821050 -156703528 - MIR SINE MIR -1 261 3 1703 149 61 15 chr3 70821352 70821680 -156702898 + MER2 DNA MER2_type 2 344 0 380 260 7 96 chr3 70821731 70821796 -156702782 - MER5A DNA MER1_type 0 189 120 2102 107 7 0 chr3 70821796 70822076 -156702502 + AluSx SINE Alu 2 283 -29 440 18 18 0 chr3 70822076 70822133 -156702445 + (TAGA)n Simple_repeat Simple_repeat 4 61 0 380 260 7 96 chr3 70822133 70822212 -156702366 - MER5A DNA MER1_type -67 122 57 1184 243 104 23 chr3 70823601 70824041 -156700537 + MLT1K LTR MaLR 1 476 0 856 238 50 40 chr3 70825388 70825691 -156698887 - L1ME4a LINE L1 -294 5827 5522 197 259 19 0 chr3 70825784 70825838 -156698740 - L2 LINE L2 -31 3241 3187 364 206 0 0 chr3 70825949 70826012 -156698566 + MIR SINE MIR 88 150 -112 616 243 0 0 chr3 70826061 70826197 -156698381 + AluJo SINE Alu 1 136 -176 2341 75 0 23 chr3 70826334 70826642 -156697936 + AluY SINE Alu 1 301 -10 236 173 39 0 chr3 70827039 70827115 -156697463 + (TA)n Simple_repeat Simple_repeat 1 78 0 451 248 92 9 chr3 70827128 70827237 -156697341 - L2 LINE L2 -15 3298 3181 1490 167 0 16 chr3 70827357 70827609 -156696969 + AluJb SINE Alu 43 290 -22 1239 210 96 10 chr3 70827634 70827948 -156696630 - MER58B DNA MER1_type 0 341 1 400 289 9 0 chr3 70827949 70828089 -156696489 - L1ME LINE L1 -303 5818 5676 289 361 31 31 chr3 70828150 70828341 -156696237 - L3 LINE CR1 -1086 491 301 216 0 0 0 chr3 70829071 70829095 -156695483 + (TA)n Simple_repeat Simple_repeat 2 25 0 707 152 158 0 chr3 70829411 70829569 -156695009 + MER20 DNA MER1_type 37 219 0 766 312 159 30 chr3 70829686 70830469 -156694109 - L2 LINE L2 -1 3271 2345 2160 130 0 0 chr3 70830469 70830769 -156693809 - AluSx SINE Alu -12 300 1 766 312 159 30 chr3 70830769 70830953 -156693625 - L2 LINE L2 -927 2345 2186 1230 147 101 82 chr3 70830956 70831262 -156693316 - MLT1B LTR MaLR -10 380 69 1199 197 7 45 chr3 70831262 70831551 -156693027 + MLT1A1 LTR MaLR 1 278 -87 2196 129 7 3 chr3 70831783 70832092 -156692486 + AluSx SINE Alu 1 310 -2 1661 170 0 27 chr3 70832143 70832437 -156692141 + AluJo SINE Alu 9 294 -18 2113 185 12 63 chr3 70832448 70832940 -156691638 + MLT1C LTR MaLR 1 467 0 2329 110 8 33 chr3 70832980 70833344 -156691234 - THE1A LTR MaLR 0 355 1 1905 128 45 43 chr3 70834014 70834388 -156690190 + THE1C LTR MaLR 1 375 0 606 276 84 38 chr3 70834397 70834636 -156689942 - MIR SINE MIR -8 254 5 232 224 0 24 chr3 70835130 70835215 -156689363 + (TA)n Simple_repeat Simple_repeat 2 84 0 24 53 0 0 chr3 70835540 70835578 -156689000 + AT_rich Low_complexity Low_complexity 1 38 0 210 191 0 0 chr3 70836081 70836123 -156688455 + MIR SINE MIR 156 197 -65 282 325 35 0 chr3 70837263 70837377 -156687201 - MER117 DNA MER1_type -61 136 19 201 370 35 71 chr3 70837466 70837720 -156686858 - L2 LINE L2 -50 3222 2978 259 222 19 0 chr3 70837766 70837820 -156686758 - Charlie1a DNA MER1_type -15 1440 1386 2236 139 3 0 chr3 70837829 70838139 -156686439 + AluSx SINE Alu 2 312 0 2703 132 41 83 chr3 70838144 70838749 -156685829 + L1MB4 LINE L1 5593 6172 -8 1776 181 54 11 chr3 70838749 70839192 -156685386 - Charlie1a DNA MER1_type -39 1416 955 1670 144 62 25 chr3 70839201 70839555 -156685023 - L1MA9 LINE L1 0 6312 5946 786 200 0 0 chr3 70839558 70839718 -156684860 + MER58 DNA MER1_type 2258 2417 -3 364 78 47 0 chr3 70839720 70839784 -156684794 + T-rich Low_complexity Low_complexity 2 68 0 221 56 0 28 chr3 70839807 70839843 -156684735 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 39467 39 2 59 chr3 70839843 70844397 -156680181 - L1PA4 LINE L1 -24 6131 1321 1845 143 7 0 chr3 70844397 70844677 -156679901 - AluSx SINE Alu -7 305 24 39467 39 2 59 chr3 70844677 70844801 -156679777 - L1PA4 LINE L1 -4834 1321 1192 9718 75 7 80 chr3 70844801 70846297 -156678281 + SVA Other Other 1 1386 0 39467 39 2 59 chr3 70846297 70848131 -156676447 - L1PA4 LINE L1 -4963 1192 2 2945 213 63 65 chr3 70848131 70849061 -156675517 - Charlie1a DNA MER1_type -482 973 45 312 272 25 12 chr3 70849162 70849243 -156675335 - L2 LINE L2 -4 3309 3228 373 132 13 26 chr3 70849273 70849349 -156675229 - L1MB4 LINE L1 0 6180 6106 868 172 0 14 chr3 70849366 70849511 -156675067 - FLAM_C SINE Alu 0 143 1 3682 229 136 47 chr3 70849512 70850061 -156674517 - L1M4 LINE L1 -871 5275 4776 1742 146 32 7 chr3 70850061 70850342 -156674236 - AluSx SINE Alu -23 289 2 3682 229 136 47 chr3 70850342 70850670 -156673908 - L1M4 LINE L1 -1370 4776 4479 2342 141 55 38 chr3 70850670 70850723 -156673855 - MSTB LTR MaLR 0 426 375 1704 121 136 0 chr3 70850723 70850995 -156673583 - AluSx SINE Alu -3 309 1 2342 141 55 38 chr3 70850995 70851360 -156673218 - MSTB LTR MaLR -51 375 1 3682 229 136 47 chr3 70851360 70852690 -156671888 - L1M4 LINE L1 -1667 4479 2857 677 276 14 14 chr3 70852700 70852910 -156671668 - L2 LINE L2 -769 2545 2336 311 261 36 36 chr3 70853652 70853790 -156670788 - L1MC4a LINE L1 -1815 5993 5856 770 234 80 25 chr3 70853791 70854030 -156670548 - L1MC4a LINE L1 -1991 5817 5566 241 329 130 0 chr3 70854219 70854365 -156670213 - MIR SINE MIR -10 252 88 4865 49 0 3 chr3 70854399 70854411 -156670167 - L1PA6 LINE L1 0 6154 6143 2485 81 3 0 chr3 70854411 70854721 -156669857 - AluSp SINE Alu 0 313 3 632 35 23 0 chr3 70854721 70854807 -156669771 + (TTTC)n Simple_repeat Simple_repeat 2 89 0 4865 49 0 3 chr3 70854807 70855389 -156669189 - L1PA6 LINE L1 -9 6145 5561 242 189 66 66 chr3 70856104 70856210 -156668368 + L1ME LINE L1 533 638 -5432 347 310 50 25 chr3 70856342 70856739 -156667839 + L1ME LINE L1 699 1105 -4873 437 324 109 14 chr3 70856793 70857142 -156667436 + L1ME LINE L1 1253 1675 -4446 414 249 123 30 chr3 70857143 70857476 -156667102 + L1ME LINE L1 1712 2075 -4186 * 444 216 6 72 chr3 70857450 70857631 -156666947 + L1MD3 LINE L1 7649 7817 -112 1627 164 22 0 chr3 70857861 70858129 -156666449 - AluJb SINE Alu -38 274 1 432 221 0 0 chr3 70858129 70858206 -156666372 + MER2 DNA MER2_type 269 345 0 1712 238 60 33 chr3 70858626 70858637 -156665941 + L1ME3 LINE L1 5405 5414 -748 2338 101 0 0 chr3 70858637 70858934 -156665644 - AluSx SINE Alu -15 297 1 1712 238 60 33 chr3 70858934 70859189 -156665389 + L1ME3 LINE L1 5414 5661 -501 1840 119 45 7 chr3 70859189 70859475 -156665103 + AluSx SINE Alu 1 297 -15 1712 238 60 33 chr3 70859475 70859947 -156664631 + L1ME3 LINE L1 5661 6161 -1 1839 148 3 11 chr3 70860048 70860332 -156664246 - AluSx SINE Alu -30 282 1 216 0 0 0 chr3 70860415 70860439 -156664139 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 1744 139 51 7 chr3 70860444 70860718 -156663860 - AluSx SINE Alu -25 287 2 225 94 0 0 chr3 70861177 70861209 -156663369 + (TC)n Simple_repeat Simple_repeat 1 32 0 405 0 0 0 chr3 70861209 70861254 -156663324 + (CA)n Simple_repeat Simple_repeat 1 45 0 379 352 31 25 chr3 70861258 70861420 -156663158 - MIR SINE MIR -87 175 13 508 279 81 37 chr3 70862295 70862538 -156662040 + MIR SINE MIR 16 262 0 217 184 20 0 chr3 70863182 70863231 -156661347 + (TA)n Simple_repeat Simple_repeat 2 51 0 389 278 70 0 chr3 70863470 70863585 -156660993 + L2 LINE L2 3148 3270 -2 249 119 0 0 chr3 70863832 70863874 -156660704 + (TG)n Simple_repeat Simple_repeat 1 42 0 1558 175 3 24 chr3 70863905 70864243 -156660335 + AluJb SINE Alu 1 332 0 384 278 99 5 chr3 70864941 70865132 -156659446 - HAL1 LINE L1 -5 2502 2294 1519 215 83 5 chr3 70865136 70865532 -156659046 - MER110 LTR ERV1 0 491 65 1022 173 6 0 chr3 70865615 70865777 -156658801 - FRAM SINE Alu -19 157 1 707 179 36 0 chr3 70866121 70866261 -156658317 + L1PA13 LINE L1 6016 6160 -3 27 29 0 0 chr3 70866261 70866295 -156658283 + AT_rich Low_complexity Low_complexity 1 34 0 477 277 106 38 chr3 70866645 70866880 -156657698 + MIR SINE MIR 12 262 0 274 116 0 0 chr3 70866912 70866955 -156657623 - AluSx SINE Alu -7 294 252 1330 136 174 0 chr3 70866955 70867191 -156657387 - AluSx SINE Alu -35 277 1 2789 185 24 26 chr3 70867354 70868013 -156656565 - L1MB8 LINE L1 -282 5896 5232 1433 178 36 57 chr3 70868013 70868538 -156656040 - MER34B LTR ERV1 0 565 3 3541 202 46 16 chr3 70868538 70869475 -156655103 - L1MB8 LINE L1 -926 5220 4256 216 0 0 0 chr3 70870527 70870551 -156654027 + (T)n Simple_repeat Simple_repeat 1 24 0 458 259 37 43 chr3 70870579 70870741 -156653837 - MIR SINE MIR -95 167 7 1408 214 18 27 chr3 70870751 70871083 -156653495 + MER58B DNA MER1_type 13 341 0 182 226 57 57 chr3 70871141 70871194 -156653384 - MER5A DNA MER1_type -89 100 48 1554 203 96 84 chr3 70872203 70872691 -156651887 - MLT1F1 LTR MaLR 0 567 74 417 227 149 7 chr3 70872793 70872934 -156651644 - L2 LINE L2 -5 3308 3148 233 348 17 43 chr3 70873318 70873433 -156651145 - L3 LINE CR1 -411 1166 1055 1238 182 21 70 chr3 70874255 70874541 -156650037 - AluJo SINE Alu -40 272 1 887 294 51 53 chr3 70875056 70875528 -156649050 + LTR33A LTR ERVL 1 471 -52 2062 225 31 15 chr3 70875545 70876002 -156648576 + L1MDa LINE L1 17 480 -6060 * 2191 239 42 5 chr3 70875990 70876580 -156647998 + L1MDa LINE L1 2840 3451 -3089 1811 153 16 26 chr3 70876599 70876738 -156647840 + AluJo SINE Alu 1 140 -172 2197 115 0 0 chr3 70876738 70877026 -156647552 + AluSc SINE Alu 1 288 -21 1811 153 16 26 chr3 70877026 70877194 -156647384 + AluJo SINE Alu 140 305 -7 1278 297 63 11 chr3 70877223 70877667 -156646911 - LTR33 LTR ERVL -54 467 1 608 278 71 5 chr3 70877958 70878156 -156646422 + MIR SINE MIR 46 256 -6 304 321 0 0 chr3 70879111 70879192 -156645386 + L2 LINE L2 3201 3281 -32 1789 147 60 12 chr3 70879193 70879512 -156645066 + Tigger3(Golem) DNA MER2_type 2684 3017 -12 207 301 38 15 chr3 70879817 70879950 -156644628 + (TATATG)n Simple_repeat Simple_repeat 3 138 0 516 290 49 88 chr3 70880071 70880710 -156643868 + L2 LINE L2 2650 3277 -36 803 167 0 14 chr3 70880748 70880886 -156643692 - MER45A DNA AcHobo -3 175 40 433 244 30 8 chr3 70880892 70881023 -156643555 + MIR SINE MIR 94 227 -35 541 199 81 22 chr3 70881951 70882008 -156642570 + MIR SINE MIR 87 139 -123 997 278 113 31 chr3 70882008 70882486 -156642092 + LTR33 LTR ERVL 1 517 -4 541 199 81 22 chr3 70882486 70882564 -156642014 + MIR SINE MIR 139 230 -32 305 328 31 31 chr3 70882723 70882851 -156641727 + MLT1K LTR MaLR 152 279 -309 751 246 41 0 chr3 70882892 70883063 -156641515 - MER97b DNA MER1_type? -874 179 2 277 229 177 21 chr3 70883508 70883604 -156640974 + MIR3 SINE MIR 87 197 -11 664 198 91 0 chr3 70883856 70883977 -156640601 + AluJb SINE Alu 2 133 -179 22 0 0 0 chr3 70883982 70884004 -156640574 + AT_rich Low_complexity Low_complexity 1 22 0 1161 161 0 16 chr3 70884056 70884248 -156640330 + AluJo SINE Alu 107 295 -17 1895 201 49 29 chr3 70884536 70884988 -156639590 - MLT1C LTR MaLR -1 466 6 1817 161 4 0 chr3 70885428 70885702 -156638876 + AluSx SINE Alu 1 275 -37 33 25 0 0 chr3 70885702 70885742 -156638836 + AT_rich Low_complexity Low_complexity 1 40 0 334 258 96 75 chr3 70885807 70886047 -156638531 + MLT1J LTR MaLR 238 482 -29 326 348 86 52 chr3 70886072 70886469 -156638109 + L2 LINE L2 2809 3270 -2 811 111 0 8 chr3 70886934 70887051 -156637527 + AluSg/x SINE Alu 174 289 -21 1208 249 134 37 chr3 70887165 70887627 -156636951 + MLT1J LTR MaLR 5 511 0 1400 205 36 152 chr3 70887956 70888497 -156636081 - MLT1F1 LTR MaLR 0 567 138 906 186 19 6 chr3 70888497 70888658 -156635920 - FRAM SINE Alu -3 163 1 1400 205 36 152 chr3 70888658 70888782 -156635796 - MLT1F1 LTR MaLR -429 138 1 246 326 20 0 chr3 70888898 70888996 -156635582 - L2 LINE L2 -2 3311 3212 605 274 123 0 chr3 70889224 70889403 -156635175 + MIR SINE MIR 31 231 -31 214 125 0 50 chr3 70890303 70890343 -156634235 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 189 308 43 77 chr3 70890573 70890690 -156633888 + MIR SINE MIR 31 143 -65 529 278 49 0 chr3 70890727 70890871 -156633707 - L2 LINE L2 -1 3312 3162 2122 141 0 0 chr3 70890902 70891206 -156633372 + AluSx SINE Alu 1 304 -8 460 257 121 26 chr3 70891206 70891552 -156633026 - L1ME LINE L1 -510 5656 5270 602 201 0 0 chr3 70891553 70891663 -156632915 + MER33 DNA MER1_type 1 100 -86 2212 105 0 0 chr3 70891669 70891985 -156632593 - AluSg SINE Alu 0 319 4 275 250 110 0 chr3 70892009 70892109 -156632469 + MER33 DNA MER1_type 69 179 -145 2649 150 12 14 chr3 70892142 70892569 -156632009 - MSTB LTR MaLR 0 426 1 * 3347 151 39 19 chr3 70892569 70893129 -156631449 + LTR39 LTR ERV1 213 783 0 276 246 0 0 chr3 70893129 70893188 -156631390 + Charlie8 DNA MER1_type 100 158 -2259 1558 93 5 5 chr3 70893196 70893401 -156631177 + AluSp SINE Alu 1 205 -108 861 178 64 13 chr3 70893708 70893865 -156630713 - AluJo SINE Alu -26 286 122 3797 205 23 17 chr3 70893941 70894688 -156629890 + MER45B DNA AcHobo 3 753 -287 380 243 118 13 chr3 70895064 70895216 -156629362 + MIR SINE MIR 81 248 -14 463 267 41 54 chr3 70895446 70895539 -156629039 - L1ME LINE L1 -303 5818 5725 1731 157 3 14 chr3 70895539 70895943 -156628635 - AluJo SINE Alu 0 401 1 463 267 41 54 chr3 70895943 70896069 -156628509 - L1ME LINE L1 -396 5725 5601 980 297 74 25 chr3 70896094 70896458 -156628120 + MLT1I LTR MaLR 28 409 0 1633 111 18 0 chr3 70898761 70898986 -156625592 - L1MC1 LINE L1 0 6333 6105 2229 147 12 0 chr3 70898986 70899327 -156625251 - L1MC1 LINE L1 -104 6229 5885 240 256 136 40 chr3 70899883 70900008 -156624570 + L2 LINE L2 3132 3268 -4 539 155 175 0 chr3 70900113 70900210 -156624368 - Tigger1 DNA MER2_type -5 2413 2300 770 171 0 24 chr3 70900213 70900336 -156624242 + FLAM_C SINE Alu 5 124 -19 1808 147 116 0 chr3 70900350 70900677 -156623901 - Tigger1 DNA MER2_type -583 1835 1471 1383 126 10 0 chr3 70900678 70900876 -156623702 - AluSg/x SINE Alu -4 306 107 298 93 0 0 chr3 70900901 70900944 -156623634 - Tigger1 DNA MER2_type -939 1479 1437 1074 103 0 0 chr3 70900945 70901081 -156623497 + AluSq/x SINE Alu 1 136 -176 906 212 11 0 chr3 70901192 70901371 -156623207 + AluSg/x SINE Alu 100 280 -32 8868 132 36 14 chr3 70901387 70902784 -156621794 - Tigger1 DNA MER2_type -968 1450 24 207 281 0 0 chr3 70903044 70903101 -156621477 - MIR SINE MIR -26 236 180 959 151 0 31 chr3 70903101 70903293 -156621285 + MER96B DNA MER1_type? 191 376 -41 241 322 39 21 chr3 70903303 70903449 -156621129 - MIR SINE MIR -63 145 30 289 310 30 0 chr3 70903466 70903566 -156621012 - MIR SINE MIR -67 141 39 222 286 16 0 chr3 70903646 70903709 -156620869 - L2 LINE L2 -1 3312 3249 261 57 0 0 chr3 70904124 70904159 -156620419 + HSMAR1 DNA Mariner 1 35 -1252 204 375 0 0 chr3 70904159 70904231 -156620347 + L2 LINE L2 3217 3288 -25 28 0 0 0 chr3 70904596 70904624 -156619954 + AT_rich Low_complexity Low_complexity 1 28 0 205 29 29 29 chr3 70904685 70904720 -156619858 + (TA)n Simple_repeat Simple_repeat 2 36 0 297 0 0 0 chr3 70904735 70904768 -156619810 + (TG)n Simple_repeat Simple_repeat 2 34 0 405 280 0 0 chr3 70904783 70904883 -156619695 + MIR SINE MIR 90 189 -73 798 286 94 10 chr3 70904908 70905300 -156619278 + LTR16A LTR ERVL 26 450 0 300 53 0 0 chr3 70905357 70905395 -156619183 + (TTA)n Simple_repeat Simple_repeat 1 38 0 259 226 97 0 chr3 70905546 70905608 -156618970 - L2 LINE L2 -1 3271 3204 234 275 109 65 chr3 70906004 70906142 -156618436 - L2 LINE L2 -5 3267 3124 1599 173 70 7 chr3 70906168 70906440 -156618138 + AluJo SINE Alu 1 289 -23 255 254 82 55 chr3 70907203 70907313 -156617265 + L1MEd LINE L1 458 570 -5549 1701 145 33 43 chr3 70907874 70908178 -156616400 + AluJo SINE Alu 3 303 -9 465 299 0 21 chr3 70909295 70909439 -156615139 + MLT1L LTR MaLR 447 587 -28 1587 149 22 22 chr3 70910005 70910273 -156614305 + AluJo SINE Alu 41 308 -4 483 267 73 13 chr3 70910289 70910439 -156614139 - MIR SINE MIR -92 170 12 1396 155 89 29 chr3 70911053 70911369 -156613209 + L1MA4 LINE L1 5965 6299 -1 2359 93 0 3 chr3 70911383 70911684 -156612894 + AluSc SINE Alu 1 300 -9 1323 191 60 40 chr3 70911739 70912037 -156612541 + AluJo SINE Alu 5 308 -4 614 211 67 70 chr3 70912186 70912470 -156612108 - HAL1b LINE L1 -29 1319 1037 3462 157 43 20 chr3 70912623 70913140 -156611438 - L1MB5 LINE L1 -13 6161 5658 15391 124 38 21 chr3 70913140 70913333 -156611245 - Tigger1 DNA MER2_type -1 2417 2229 1577 161 95 0 chr3 70913333 70913606 -156610972 + AluJb SINE Alu 1 299 -13 2215 124 7 0 chr3 70913606 70913912 -156610666 + AluSq SINE Alu 1 308 -5 15391 124 38 21 chr3 70913912 70915343 -156609235 - Tigger1 DNA MER2_type -189 2229 824 1948 143 0 19 chr3 70915343 70915658 -156608920 + AluSx SINE Alu 1 309 -3 15391 124 38 21 chr3 70915658 70915864 -156608714 - Tigger1 DNA MER2_type -1594 824 623 269 26 26 0 chr3 70915864 70915902 -156608676 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1625 206 7 0 chr3 70915906 70916188 -156608390 - AluJo SINE Alu -28 284 1 15391 124 38 21 chr3 70916188 70916726 -156607852 - Tigger1 DNA MER2_type -1797 621 1 3462 157 43 20 chr3 70916726 70916808 -156607770 - L1MB5 LINE L1 -516 5658 5548 2090 98 10 14 chr3 70917124 70917420 -156607158 + AluSq SINE Alu 4 298 -15 191 242 125 102 chr3 70917734 70917862 -156606716 + MIR SINE MIR 17 147 -61 532 243 131 14 chr3 70918351 70918573 -156606005 - MIR SINE MIR -12 250 3 228 246 18 0 chr3 70918890 70918947 -156605631 - L2 LINE L2 -1 3312 3255 1038 211 10 19 chr3 70919218 70919526 -156605052 - AluYa5 SINE Alu 0 311 7 684 183 23 40 chr3 70919786 70919961 -156604617 + MER45B DNA AcHobo 780 951 -89 232 276 11 23 chr3 70919969 70920056 -156604522 - MER34 LTR ERV1 -8 534 449 511 269 19 88 chr3 70920200 70920460 -156604118 - MER34 LTR ERV1 -278 264 23 449 188 12 0 chr3 70920475 70920555 -156604023 + MER45B DNA AcHobo 960 1040 0 561 271 89 25 chr3 70921525 70921964 -156602614 - L1ME4a LINE L1 -1 6120 5654 2059 138 10 0 chr3 70922766 70923062 -156601516 - AluSx SINE Alu -13 299 1 2656 218 94 19 chr3 70923579 70924248 -156600330 + MER72 LTR ERV1 4 722 0 423 308 26 46 chr3 70924388 70924583 -156599995 + L2 LINE L2 2869 3059 -254 204 254 114 61 chr3 70924725 70924839 -156599739 + L2 LINE L2 3123 3242 -71 335 222 75 60 chr3 70924839 70925044 -156599534 - MER34 LTR ERV1 -5 537 438 5185 100 34 0 chr3 70925216 70925929 -156598649 - L1PA13 LINE L1 -2 6161 5425 273 254 0 45 chr3 70926131 70926198 -156598380 + L2 LINE L2 3250 3313 0 341 208 58 25 chr3 70926781 70926901 -156597677 - L1MC5 LINE L1 -30 7931 7808 28 48 0 0 chr3 70926953 70926995 -156597583 + AT_rich Low_complexity Low_complexity 1 42 0 313 301 38 23 chr3 70926995 70927128 -156597450 - L1MC5 LINE L1 -139 7822 7688 2722 138 33 8 chr3 70927171 70927650 -156596928 - L1MB3 LINE L1 -1 6182 5692 2385 147 59 38 chr3 70927650 70928266 -156596312 + LTR1B LTR ERV1 16 826 0 680 99 81 0 chr3 70928266 70928377 -156596201 - L1M3 LINE L1 -476 5707 5588 256 276 2 0 chr3 70928517 70928580 -156595998 + MIR SINE MIR 92 156 -52 2048 187 88 52 chr3 70928583 70929080 -156595498 + MLT2B2 LTR ERVL 1 515 0 249 57 0 0 chr3 70929287 70929322 -156595256 + (CA)n Simple_repeat Simple_repeat 2 36 0 483 196 0 20 chr3 70929487 70929589 -156594989 + MIR SINE MIR 162 261 -1 189 0 0 0 chr3 70931622 70931643 -156592935 + (A)n Simple_repeat Simple_repeat 1 21 0 333 0 0 0 chr3 70932171 70932208 -156592370 + (CA)n Simple_repeat Simple_repeat 1 37 0 1911 96 7 14 chr3 70932364 70932646 -156591932 - L1PB2 LINE L1 -2 6149 5870 387 325 45 0 chr3 70932651 70932805 -156591773 + MIR SINE MIR 12 172 -90 221 305 195 8 chr3 70932993 70933111 -156591467 - MIR SINE MIR -10 252 113 783 153 134 0 chr3 70933132 70933289 -156591289 - MSTC LTR MaLR -2 426 249 414 298 154 29 chr3 70933539 70933747 -156590831 + L2 LINE L2 3077 3310 -3 1529 186 30 30 chr3 70933867 70934163 -156590415 - AluJo SINE Alu -16 296 1 573 201 15 8 chr3 70934172 70934306 -156590272 - L1MD1 LINE L1 0 6242 6108 30 0 0 0 chr3 70934641 70934671 -156589907 + AT_rich Low_complexity Low_complexity 1 30 0 2627 140 17 7 chr3 70934801 70935223 -156589355 - MSTA LTR MaLR -2 426 1 327 353 37 15 chr3 70935448 70935584 -156588994 - L3 LINE CR1 -24 1553 1415 407 291 78 17 chr3 70935651 70935830 -156588748 - MIR SINE MIR 0 262 73 1331 231 134 14 chr3 70935859 70936292 -156588286 - MLT1D LTR MaLR 0 505 21 263 259 26 95 chr3 70936410 70936526 -156588052 + L2 LINE L2 3163 3270 -2 486 297 151 10 chr3 70936526 70936718 -156587860 - L3 LINE CR1 -310 1267 1049 3057 144 2 42 chr3 70936721 70937275 -156587303 - MER34 LTR ERV1 0 542 11 29 0 0 0 chr3 70938059 70938088 -156586490 + AT_rich Low_complexity Low_complexity 1 29 0 213 154 0 0 chr3 70938385 70938424 -156586154 + CT-rich Low_complexity Low_complexity 2 40 0 346 215 117 117 chr3 70939996 70940210 -156584368 + MIR SINE MIR 21 234 -28 185 220 0 17 chr3 70940215 70940274 -156584304 + (TATATG)n Simple_repeat Simple_repeat 1 58 0 1874 138 25 4 chr3 70940387 70940692 -156583886 + AluSx SINE Alu 1 311 0 344 333 56 0 chr3 70944372 70944498 -156580080 - L2 LINE L2 0 3272 3140 390 21 0 0 chr3 70945724 70945771 -156578807 + (CA)n Simple_repeat Simple_repeat 2 48 0 196 264 54 126 chr3 70945820 70945842 -156578736 - L2 LINE L2 0 3313 3291 1972 183 6 0 chr3 70945842 70946186 -156578392 + MER7A DNA MER2_type 3 346 0 196 264 54 126 chr3 70946186 70946330 -156578248 - L2 LINE L2 -22 3291 3159 867 312 190 17 chr3 70946402 70947114 -156577464 + L2 LINE L2 1533 2367 -947 375 291 99 0 chr3 70947202 70947374 -156577204 - L1M4 LINE L1 -3275 2871 2683 1278 265 78 19 chr3 70947374 70947918 -156576660 + MLT1G1 LTR MaLR 1 487 -43 36355 43 5 2 chr3 70947944 70953476 -156571102 - L1PA3 LINE L1 -3 6152 607 1834 204 28 41 chr3 71003476 71003913 -156520665 - L1ME LINE L1 -458 5708 5278 1540 206 3 20 chr3 71003913 71004219 -156520359 - AluJo SINE Alu -11 301 1 243 88 0 0 chr3 71004221 71004255 -156520323 + (T)n Simple_repeat Simple_repeat 1 34 0 301 130 19 0 chr3 71004272 71004326 -156520252 - L1PB2 LINE L1 -1 6150 6096 2082 95 4 11 chr3 71004327 71004601 -156519977 - AluSg1 SINE Alu -9 300 29 674 143 0 0 chr3 71004701 71004792 -156519786 - AluJ/FLAM SINE Alu -217 95 5 2253 112 0 3 chr3 71004838 71005134 -156519444 + AluSx SINE Alu 1 295 -17 2082 158 58 60 chr3 71005430 71005898 -156518680 - MLT1C LTR MaLR 0 467 1 2767 234 95 20 chr3 71006055 71006154 -156518424 - L1ME LINE L1 -1066 5080 4990 2473 57 0 3 chr3 71006154 71006452 -156518126 + AluY SINE Alu 1 297 -14 2767 234 95 20 chr3 71006452 71007269 -156517309 - L1ME LINE L1 -1156 4990 4095 199 286 0 0 chr3 71007774 71007823 -156516755 - L2 LINE L2 -2 3311 3263 337 328 46 23 chr3 71009755 71009886 -156514692 - MIR3 SINE MIR -46 162 29 198 0 0 0 chr3 71009970 71009992 -156514586 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2086 180 45 5 chr3 71010088 71010466 -156514112 - MSTD LTR MaLR 0 396 4 435 224 0 35 chr3 71010478 71010563 -156514015 + MER2 DNA MER2_type 8 89 -150 1806 170 64 37 chr3 71011824 71012200 -156512378 - MLT1C LTR MaLR 0 467 82 1835 137 11 18 chr3 71012360 71012637 -156511941 - AluSx SINE Alu -37 275 1 1675 198 0 3 chr3 71012675 71012983 -156511595 - AluJb SINE Alu -5 307 1 2126 196 23 34 chr3 71013216 71013265 -156511313 + MLT1F LTR MaLR 109 157 -385 2346 113 0 0 chr3 71013265 71013567 -156511011 - AluSx SINE Alu -10 302 1 2126 196 23 34 chr3 71013567 71013956 -156510622 + MLT1F LTR MaLR 157 542 0 198 102 20 41 chr3 71015030 71015079 -156509499 + (TCTCC)n Simple_repeat Simple_repeat 4 51 0 1825 164 50 130 chr3 71017042 71017428 -156507150 - L1MC4 LINE L1 -5 8037 7714 1746 166 7 14 chr3 71017428 71017740 -156506838 - AluJo SINE Alu 0 318 9 1825 164 50 130 chr3 71017740 71017966 -156506612 - L1MC4 LINE L1 -328 7714 7472 708 143 89 0 chr3 71018171 71018283 -156506295 - AluSg/x SINE Alu -12 298 177 1573 147 12 4 chr3 71018283 71018535 -156506043 - AluSx SINE Alu -58 254 1 798 180 65 30 chr3 71018779 71018979 -156505599 + MER58 DNA MER1_type 1 207 -2213 33 0 0 0 chr3 71019171 71019204 -156505374 + AT_rich Low_complexity Low_complexity 1 33 0 10623 191 21 17 chr3 71019206 71019553 -156505025 - L1P5 LINE L1 -676 5475 5131 2367 107 0 0 chr3 71019553 71019862 -156504716 - AluSg SINE Alu -1 309 1 10623 191 21 17 chr3 71019862 71021679 -156502899 - L1P5 LINE L1 -1020 5131 3301 2084 109 18 0 chr3 71021679 71021964 -156502614 - AluSq SINE Alu -23 290 1 10623 191 21 17 chr3 71021964 71022230 -156502348 - L1P5 LINE L1 -2850 3301 3037 832 164 0 0 chr3 71022234 71022362 -156502216 - AluSg/x SINE Alu -2 310 183 3019 193 71 158 chr3 71022463 71022952 -156501626 - L1MCa LINE L1 -2598 3828 3298 2087 139 3 3 chr3 71022952 71023261 -156501317 - AluSq SINE Alu -4 309 1 3019 193 71 158 chr3 71023261 71024213 -156500365 - L1MCa LINE L1 -3128 3298 2535 718 215 0 0 chr3 71024213 71024334 -156500244 - FLAM_C SINE Alu -10 123 3 3019 193 71 158 chr3 71024334 71024488 -156500090 - L1MCa LINE L1 -3891 2535 2369 359 171 13 0 chr3 71024797 71024873 -156499705 + (TGGA)n Simple_repeat Simple_repeat 2 78 0 24 53 0 0 chr3 71025248 71025286 -156499292 + AT_rich Low_complexity Low_complexity 1 38 0 2195 98 3 14 chr3 71025286 71025582 -156498996 + AluSx SINE Alu 1 293 -19 252 232 152 101 chr3 71025835 71025885 -156498693 - L1ME LINE L1 -343 5819 5773 1457 174 131 0 chr3 71025885 71026144 -156498434 + AluSq SINE Alu 2 294 -9 252 232 152 101 chr3 71026144 71026291 -156498287 - L1ME LINE L1 -389 5773 5612 2149 83 31 3 chr3 71027025 71027313 -156497265 - AluSp SINE Alu -16 297 2 306 164 0 0 chr3 71027657 71027712 -156496866 + CT-rich Low_complexity Low_complexity 2 56 0 322 320 39 39 chr3 71027805 71027958 -156496620 - MLT1K LTR MaLR -249 339 187 350 246 0 82 chr3 71028059 71028169 -156496409 + MER5A DNA MER1_type 9 109 -80 2149 102 0 43 chr3 71029359 71029663 -156494915 + AluSx SINE Alu 1 291 -21 805 188 101 72 chr3 71029728 71029777 -156494801 + AluJo SINE Alu 85 131 -181 2281 91 0 7 chr3 71029777 71030074 -156494504 + AluY SINE Alu 1 295 -16 805 188 101 72 chr3 71030074 71030232 -156494346 + AluJo SINE Alu 131 298 -14 209 268 147 19 chr3 71030395 71030552 -156494026 + MIR SINE MIR 86 262 0 342 67 0 0 chr3 71031110 71031155 -156493423 + (CA)n Simple_repeat Simple_repeat 2 46 0 1696 139 84 0 chr3 71031505 71031778 -156492800 + AluJb SINE Alu 6 301 -11 326 194 28 0 chr3 71032713 71032785 -156491793 - MER5A DNA MER1_type -106 83 10 937 160 78 75 chr3 71032805 71033124 -156491454 - MER33 DNA MER1_type -4 320 1 2061 95 0 15 chr3 71033370 71033644 -156490934 - AluSg1 SINE Alu -39 270 1 1796 140 36 7 chr3 71033648 71033963 -156490615 - AluSq SINE Alu 0 323 1 378 260 10 0 chr3 71034101 71034205 -156490373 - L1MC5 LINE L1 -543 7418 7314 215 228 18 0 chr3 71034231 71034288 -156490290 - MER5B DNA MER1_type -4 174 117 1278 204 22 7 chr3 71034288 71034558 -156490020 + AluJo SINE Alu 1 274 -38 620 179 8 15 chr3 71034575 71034709 -156489869 - MER5B DNA MER1_type -45 133 1 597 294 40 50 chr3 71035000 71035474 -156489104 - MLT1K LTR MaLR -77 511 2 532 300 85 32 chr3 71035506 71035753 -156488825 - MIR SINE MIR 0 262 3 1531 252 141 24 chr3 71035772 71036283 -156488295 + MLT1E LTR MaLR 1 571 -22 190 309 75 0 chr3 71036444 71036538 -156488040 + L2 LINE L2 3171 3271 -1 329 233 92 17 chr3 71036825 71036945 -156487633 + MIR SINE MIR 25 153 -109 290 214 126 19 chr3 71037000 71037103 -156487475 + L2 LINE L2 3194 3307 -6 1295 89 11 0 chr3 71037714 71038042 -156486536 + AluSg1 SINE Alu 7 294 -16 31 68 0 0 chr3 71039077 71039136 -156485442 + GC_rich Low_complexity Low_complexity 1 59 0 23 54 0 0 chr3 71039473 71039510 -156485068 + GC_rich Low_complexity Low_complexity 1 37 0 1010 98 0 0 chr3 71041554 71041687 -156482891 - AluSc SINE Alu -176 133 1 349 63 2 109 chr3 71041955 71042033 -156482545 + Alu SINE Alu 247 302 0 1294 217 11 81 chr3 71042033 71042249 -156482329 + L1ME1 LINE L1 5815 5998 -168 1599 174 52 14 chr3 71042249 71042420 -156482158 - AluJo SINE Alu -10 302 114 214 29 57 0 chr3 71042420 71042455 -156482123 + (TG)n Simple_repeat Simple_repeat 2 38 0 1599 174 52 14 chr3 71042455 71042571 -156482007 - AluJo SINE Alu -198 114 4 1294 217 11 81 chr3 71042571 71042713 -156481865 + L1ME1 LINE L1 5998 6148 -18 793 267 13 49 chr3 71042740 71043129 -156481449 - MLT1K LTR MaLR -108 480 5 202 355 24 35 chr3 71043936 71044105 -156480473 + L2 LINE L2 2793 2959 -355 1134 122 17 6 chr3 71044106 71044287 -156480291 - MER20 DNA MER1_type 0 219 37 182 176 0 0 chr3 71044363 71044397 -156480181 + L2 LINE L2 3034 3067 -246 1840 131 35 3 chr3 71044423 71044706 -156479872 - AluSx SINE Alu -20 292 1 2037 122 16 10 chr3 71044706 71045008 -156479570 - AluSx SINE Alu -7 305 1 2261 102 0 34 chr3 71045020 71045343 -156479235 - AluSx SINE Alu 0 312 1 199 375 23 8 chr3 71045424 71045552 -156479026 + L2 LINE L2 3166 3295 -18 759 173 7 7 chr3 71045896 71046035 -156478543 - FLAM_C SINE Alu 0 143 5 1716 152 56 0 chr3 71046314 71046623 -156477955 - AluJo SINE Alu 0 324 1 2276 107 3 0 chr3 71047733 71048033 -156476545 + AluSq SINE Alu 1 301 -12 2230 103 0 13 chr3 71048357 71048659 -156475919 + AluSx SINE Alu 1 298 -14 318 215 13 13 chr3 71048841 71048920 -156475658 + MIR SINE MIR 86 164 -98 1429 186 0 4 chr3 71049061 71049298 -156475280 - AluJb SINE Alu -68 244 9 2085 92 0 62 chr3 71049452 71049585 -156474993 + AluSc SINE Alu 1 141 -173 2309 109 0 3 chr3 71049585 71049896 -156474682 + AluSg SINE Alu 1 310 0 2085 92 0 62 chr3 71049896 71050095 -156474483 + AluSc SINE Alu 141 314 0 271 336 77 7 chr3 71051036 71051179 -156473399 + MIR SINE MIR 110 262 0 583 283 23 6 chr3 71051189 71051362 -156473216 + MER104 DNA MER2_type 5 180 0 493 274 24 62 chr3 71052124 71052225 -156472353 + MIR SINE MIR 47 137 -125 1826 164 7 3 chr3 71052225 71052529 -156472049 + AluJo SINE Alu 1 305 -7 493 274 24 62 chr3 71052529 71052635 -156471943 + MIR SINE MIR 137 246 -16 201 268 70 0 chr3 71052650 71052721 -156471857 + L2 LINE L2 3232 3307 -6 252 308 120 14 chr3 71052982 71053190 -156471388 - L2 LINE L2 -1347 1967 1738 559 288 55 55 chr3 71053337 71053440 -156471138 + L1MC/D LINE L1 5346 5447 -681 1810 177 0 10 chr3 71053440 71053745 -156470833 - AluJo SINE Alu -10 302 1 559 288 55 55 chr3 71053745 71053966 -156470612 + L1MC/D LINE L1 5447 5660 -468 423 116 58 17 chr3 71054003 71054176 -156470402 + (TA)n Simple_repeat Simple_repeat 1 180 0 351 0 0 0 chr3 71054221 71054260 -156470318 + (TG)n Simple_repeat Simple_repeat 1 39 0 243 61 0 0 chr3 71054262 71054295 -156470283 + (GA)n Simple_repeat Simple_repeat 2 34 0 382 247 82 10 chr3 71056641 71056738 -156467840 + MER81 DNA DNA 11 114 0 2048 131 7 7 chr3 71057925 71058223 -156466355 + AluSg SINE Alu 1 298 -12 918 138 0 0 chr3 71058372 71058505 -156466073 + AluSg/x SINE Alu 164 296 -16 180 0 0 0 chr3 71058505 71058525 -156466053 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 225 0 0 0 chr3 71058524 71058549 -156466029 + (TG)n Simple_repeat Simple_repeat 2 26 0 918 138 0 0 chr3 71058525 71058553 -156466025 + AluSg/x SINE Alu 295 301 -11 1779 192 0 10 chr3 71058862 71059174 -156465404 - AluJb SINE Alu -3 309 1 1889 151 0 3 chr3 71059306 71059620 -156464958 + AluSx SINE Alu 1 313 0 438 271 162 53 chr3 71059941 71060225 -156464353 - L2 LINE L2 -1 3312 2998 24 0 0 0 chr3 71060485 71060509 -156464069 + AT_rich Low_complexity Low_complexity 1 24 0 1532 213 78 23 chr3 71061108 71061503 -156463075 - MER63B DNA MER1_type -19 417 1 2089 173 16 71 chr3 71061520 71061536 -156463042 - MLT1C LTR MaLR -6 461 446 1696 169 172 5 chr3 71061536 71061903 -156462675 + MSTA LTR MaLR 1 428 0 2089 173 16 71 chr3 71061903 71062337 -156462241 - MLT1C LTR MaLR -21 446 36 2062 126 3 0 chr3 71062390 71062676 -156461902 + AluSx SINE Alu 15 301 -11 346 303 109 11 chr3 71062845 71063020 -156461558 - MIR SINE MIR -24 238 47 2174 138 0 3 chr3 71063585 71063890 -156460688 - AluSx SINE Alu -8 304 1 1754 187 3 16 chr3 71063892 71064207 -156460371 - AluJo SINE Alu -1 311 1 2138 207 81 8 chr3 71064352 71064821 -156459757 - MLT1E1 LTR MaLR 0 654 152 1105 203 77 34 chr3 71064883 71065238 -156459340 - MLT1A1 LTR MaLR 0 428 1 353 302 50 59 chr3 71066101 71066442 -156458136 - MER102b DNA MER1_type -3 338 1 528 247 102 46 chr3 71066812 71067052 -156457526 + MLT1L LTR MaLR 292 563 -40 238 211 179 21 chr3 71067244 71067339 -156457239 + MER117 DNA MER1_type 84 193 -4 280 289 66 8 chr3 71067483 71067604 -156456974 + MIR SINE MIR 97 224 -38 1609 178 56 11 chr3 71067909 71068195 -156456383 + AluJb SINE Alu 1 299 -13 765 209 87 43 chr3 71068373 71068603 -156455975 + MIR SINE MIR 2 241 -21 1789 113 0 4 chr3 71068816 71069054 -156455524 - AluSx SINE Alu -75 237 1 2288 104 33 36 chr3 71069215 71069580 -156454998 + THE1B LTR MaLR 1 364 0 235 282 42 0 chr3 71069860 71069931 -156454647 + LTR37B LTR ERV1 1 74 -394 264 261 14 0 chr3 71070028 71070097 -156454481 + LTR37B LTR ERV1 199 268 -200 29 78 0 0 chr3 71070111 71070175 -156454403 + AT_rich Low_complexity Low_complexity 1 64 0 1387 161 51 72 chr3 71070175 71070334 -156454244 - AluJo SINE Alu -26 286 134 2052 114 3 3 chr3 71070334 71070623 -156453955 + AluY SINE Alu 1 289 -22 1387 161 51 72 chr3 71070623 71070755 -156453823 - AluJo SINE Alu -178 134 1 486 209 0 0 chr3 71070761 71070852 -156453726 - L1MB5 LINE L1 -39 6135 6045 264 163 0 0 chr3 71070863 71070906 -156453672 - L1MB5 LINE L1 -87 6087 6045 4527 173 38 31 chr3 71070908 71072421 -156452157 - L1MB5 LINE L1 -77 6097 4575 609 239 78 37 chr3 71072422 71072484 -156452094 + LTR37B LTR ERV1 242 300 -168 207 100 0 0 chr3 71072484 71072514 -156452064 + (TA)n Simple_repeat Simple_repeat 2 31 0 2309 81 3 0 chr3 71072514 71072797 -156451781 - AluY SINE Alu -27 284 1 609 239 78 37 chr3 71072797 71072951 -156451627 + LTR37B LTR ERV1 299 468 0 709 222 53 18 chr3 71072975 71073146 -156451432 - MER5B DNA MER1_type -1 177 1 2650 119 49 5 chr3 71073563 71073973 -156450605 - MSTA LTR MaLR 0 428 1 722 281 84 4 chr3 71074230 71074468 -156450110 + MIR SINE MIR 3 259 -3 2403 87 0 0 chr3 71074532 71074830 -156449748 - AluY SINE Alu -13 298 1 2094 132 3 0 chr3 71075173 71075489 -156449089 - AluSx SINE Alu 0 317 1 726 181 8 8 chr3 71076031 71076158 -156448420 + FLAM_A SINE Alu 1 127 -6 236 219 0 0 chr3 71076164 71076205 -156448373 - MLT1L LTR MaLR -574 41 1 24 91 0 0 chr3 71076761 71076827 -156447751 + AT_rich Low_complexity Low_complexity 1 66 0 3414 261 64 15 chr3 71077777 71079014 -156445564 + L1M4 LINE L1 2469 3766 -2380 1973 85 0 0 chr3 71079051 71079297 -156445281 + AluSq SINE Alu 49 294 -19 219 36 0 0 chr3 71079301 71079329 -156445249 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2822 184 96 108 chr3 71079338 71080115 -156444463 + L1MDb LINE L1 640 1406 -5137 763 212 0 0 chr3 71080115 71080247 -156444331 + FLAM_C SINE Alu 1 132 -1 2822 184 96 108 chr3 71080247 71080397 -156444181 + L1MDb LINE L1 1406 1556 -4987 945 227 162 8 chr3 71080523 71080807 -156443771 + L1MDb LINE L1 1972 2322 -4218 2545 70 0 3 chr3 71080807 71081121 -156443457 + AluSq SINE Alu 1 313 0 945 227 162 8 chr3 71081121 71081188 -156443390 + L1MDb LINE L1 2322 2377 -4163 2631 138 17 17 chr3 71081189 71081556 -156443022 - Tigger2a DNA MER2_type -2285 423 54 2469 153 43 12 chr3 71081556 71081975 -156442603 - MSTB1 LTR MaLR 0 432 1 2631 138 17 17 chr3 71081975 71082014 -156442564 - Tigger2a DNA MER2_type -2653 55 17 377 179 57 0 chr3 71082040 71082146 -156442432 + L1MDb LINE L1 2384 2495 -4045 18011 184 93 16 chr3 71082150 71083915 -156440663 + L1P4 LINE L1 7 1636 -5965 2239 123 0 0 chr3 71083915 71084217 -156440361 + AluSx SINE Alu 1 302 -10 18011 184 93 16 chr3 71084217 71085036 -156439542 + L1P4 LINE L1 1636 2391 -5210 1902 130 4 4 chr3 71085036 71085313 -156439265 + AluSx SINE Alu 1 277 -35 279 0 0 0 chr3 71085314 71085345 -156439233 + (CA)n Simple_repeat Simple_repeat 2 32 0 18011 184 93 16 chr3 71085345 71088268 -156436310 + L1P4 LINE L1 2390 7008 -593 402 167 0 0 chr3 71088643 71088727 -156435851 + CT-rich Low_complexity Low_complexity 3 86 0 1512 168 30 11 chr3 71088747 71089009 -156435569 - AluSq SINE Alu -44 269 3 372 325 63 24 chr3 71089073 71089279 -156435299 + MIR SINE MIR 11 224 -38 1308 216 54 3 chr3 71089537 71089834 -156434744 - MER58B DNA MER1_type 0 341 30 2157 113 0 10 chr3 71089853 71090155 -156434423 - AluSx SINE Alu -13 299 1 270 0 0 0 chr3 71090769 71090799 -156433779 + (TG)n Simple_repeat Simple_repeat 1 30 0 391 331 14 28 chr3 71091827 71091972 -156432606 + L2 LINE L2 2507 2649 -665 686 235 20 7 chr3 71092162 71092311 -156432267 + MIR SINE MIR 6 156 -106 1859 143 31 10 chr3 71092328 71092621 -156431957 - AluJb SINE Alu -13 299 1 181 288 9 63 chr3 71092626 71092737 -156431841 + MIR SINE MIR 150 254 -8 190 322 68 25 chr3 71092780 71092898 -156431680 + L2 LINE L2 2972 3094 -219 1482 202 199 54 chr3 71092954 71093860 -156430718 - L1MC4 LINE L1 -104 7704 6667 2112 120 3 3 chr3 71093860 71094161 -156430417 - AluSx SINE Alu -11 301 1 1482 202 199 54 chr3 71094161 71094428 -156430150 - L1MC4 LINE L1 -1141 6667 6440 443 321 123 19 chr3 71094552 71094714 -156429864 - MER91A DNA MER1_type -17 179 1 267 264 91 18 chr3 71095030 71095140 -156429438 - MLT1H LTR MaLR -392 157 40 28 0 0 0 chr3 71096162 71096190 -156428388 + AT_rich Low_complexity Low_complexity 1 28 0 1845 146 0 54 chr3 71096769 71097085 -156427493 + AluJb SINE Alu 1 299 -13 1050 195 13 53 chr3 71097250 71097476 -156427102 + MER20 DNA MER1_type 1 217 -2 2183 116 0 3 chr3 71098537 71098838 -156425740 - AluSq SINE Alu -13 300 1 315 161 0 0 chr3 71098932 71098988 -156425590 + (TG)n Simple_repeat Simple_repeat 2 57 0 210 260 0 52 chr3 71099449 71099526 -156425052 + CT-rich Low_complexity Low_complexity 3 75 0 191 324 66 33 chr3 71099687 71099869 -156424709 + MIR SINE MIR 75 262 0 327 278 24 71 chr3 71102386 71102512 -156422066 + MIR SINE MIR 2 121 -141 412 278 135 45 chr3 71102529 71102795 -156421783 + MLT1J LTR MaLR 28 317 -194 247 140 35 35 chr3 71102845 71102902 -156421676 + MLT1L LTR MaLR 509 565 -50 416 255 47 0 chr3 71102937 71103043 -156421535 + MIR SINE MIR 118 228 -34 2018 170 2 82 chr3 71103094 71103518 -156421060 - MLT1B LTR MaLR 0 390 1 984 230 97 50 chr3 71105079 71105645 -156418933 + L1MC5 LINE L1 7274 7866 -95 180 348 22 33 chr3 71106375 71106467 -156418111 - L2 LINE L2 -2 3270 3180 2149 109 3 55 chr3 71106569 71106898 -156417680 - AluSx SINE Alu 0 312 1 237 333 125 6 chr3 71107051 71107219 -156417359 - MIR SINE MIR -70 192 5 2162 125 0 3 chr3 71107422 71107718 -156416860 - AluSg SINE Alu -15 295 1 2355 95 0 0 chr3 71109039 71109344 -156415234 + AluSg SINE Alu 1 305 -5 1858 176 21 18 chr3 71109541 71109870 -156414708 + MER44D DNA MER2_type 1 600 -9 251 376 43 0 chr3 71110079 71110172 -156414406 - L2 LINE L2 -55 3217 3121 1888 145 0 14 chr3 71110286 71110569 -156414009 + AluJb SINE Alu 1 279 -33 237 65 0 0 chr3 71110570 71110601 -156413977 + (CA)n Simple_repeat Simple_repeat 2 32 0 312 119 0 0 chr3 71110795 71110837 -156413741 - 5S rRNA rRNA -79 42 1 807 292 116 34 chr3 71111206 71111593 -156412985 + L2 LINE L2 2894 3312 -1 1970 193 2 37 chr3 71111728 71112158 -156412420 - L1M4 LINE L1 -1774 4372 3958 1532 161 0 19 chr3 71112162 71112429 -156412149 - AluSx SINE Alu 0 312 51 252 91 0 0 chr3 71112470 71112503 -156412075 - AluSx SINE Alu -259 43 11 2016 100 7 17 chr3 71112513 71112802 -156411776 - AluSg SINE Alu -24 286 1 227 128 0 43 chr3 71112818 71112865 -156411713 - L1M4 LINE L1 -2191 3955 3911 47 0 0 17 chr3 71113591 71113637 -156410941 + AT_rich Low_complexity Low_complexity 1 47 -10 1756 161 40 7 chr3 71113637 71113910 -156410668 - AluJb SINE Alu -30 282 1 47 0 0 17 chr3 71113910 71113921 -156410657 + AT_rich Low_complexity Low_complexity 47 57 0 225 276 142 60 chr3 71113921 71114055 -156410523 - MIR SINE MIR -105 157 13 303 330 0 21 chr3 71114225 71114319 -156410259 - L3 LINE CR1 -89 1488 1397 1335 177 154 10 chr3 71114444 71114749 -156409829 - L1MB8 LINE L1 -5 6173 5825 1070 77 0 0 chr3 71114755 71114885 -156409693 - AluSp SINE Alu -183 130 1 722 171 18 41 chr3 71114889 71115059 -156409519 - L1MB8 LINE L1 -347 5837 5672 394 312 74 14 chr3 71115075 71115290 -156409288 - L3 LINE CR1 -710 867 640 464 282 44 48 chr3 71115525 71115731 -156408847 + MIR SINE MIR 37 241 -21 1063 134 16 82 chr3 71116807 71117001 -156407577 - AluJb SINE Alu -131 181 1 5550 202 26 8 chr3 71117007 71118239 -156406339 - L1MB8 LINE L1 -818 5328 4075 216 97 0 0 chr3 71118668 71118699 -156405879 + (TCC)n Simple_repeat Simple_repeat 3 33 0 357 302 69 38 chr3 71118733 71118892 -156405686 - MIR SINE MIR -37 225 62 211 310 0 0 chr3 71119441 71119499 -156405079 + C-rich Low_complexity Low_complexity 6 63 0 468 239 64 9 chr3 71119501 71119610 -156404968 - L2 LINE L2 -15 3298 3184 702 199 128 57 chr3 71121068 71121419 -156403159 + L1MC5 LINE L1 7154 7529 -432 543 221 0 0 chr3 71121426 71121521 -156403057 + FLAM_A SINE Alu 20 114 -28 312 83 0 0 chr3 71121524 71121572 -156403006 + (GA)n Simple_repeat Simple_repeat 1 48 0 379 251 89 28 chr3 71121573 71121752 -156402826 + L1MC5 LINE L1 7510 7699 -262 1968 106 63 7 chr3 71121761 71122045 -156402533 + AluSx SINE Alu 1 300 -12 201 268 54 0 chr3 71122048 71122104 -156402474 + L2 LINE L2 3207 3265 -7 438 235 0 0 chr3 71123671 71123752 -156400826 + LTR67 LTR ERVL 115 195 -362 1025 244 42 0 chr3 71123892 71124105 -156400473 - MER58A DNA MER1_type 0 224 3 328 218 40 50 chr3 71124108 71124209 -156400369 + LTR67 LTR ERVL 442 541 -16 1817 152 0 20 chr3 71124372 71124675 -156399903 - AluJb SINE Alu -15 297 1 3148 176 96 44 chr3 71124770 71125456 -156399122 - L1MD2 LINE L1 -67 6292 5571 330 300 42 17 chr3 71125576 71125696 -156398882 - MIR SINE MIR -26 236 114 2558 53 0 7 chr3 71125770 71126073 -156398505 + AluY SINE Alu 1 301 -10 274 181 14 14 chr3 71127374 71127446 -156397132 + CT-rich Low_complexity Low_complexity 2 73 0 839 197 0 0 chr3 71127448 71127580 -156396998 - FLAM_C SINE Alu 0 133 2 930 191 75 121 chr3 71127583 71127929 -156396649 - MLT1A2 LTR MaLR -44 330 1 196 338 78 0 chr3 71128031 71128108 -156396470 - MIR SINE MIR -125 137 55 2149 120 0 0 chr3 71129989 71130273 -156394305 + AluSx SINE Alu 1 284 -28 2158 123 7 0 chr3 71130289 71130590 -156393988 + AluSg1 SINE Alu 1 303 -6 738 209 92 34 chr3 71130925 71131131 -156393447 - MER20 DNA MER1_type 0 219 2 317 230 58 35 chr3 71131783 71131870 -156392708 - L2 LINE L2 -34 3279 3191 193 227 23 0 chr3 71132325 71132369 -156392209 + MIR SINE MIR 86 130 -132 369 154 0 0 chr3 71132570 71132635 -156391943 - L1M4 LINE L1 -3642 2504 2440 2036 153 0 3 chr3 71132639 71132947 -156391631 - AluSx SINE Alu -5 307 1 2446 81 0 16 chr3 71133038 71133348 -156391230 - AluSx SINE Alu -7 305 1 228 354 10 10 chr3 71133643 71133739 -156390839 + L2 LINE L2 3173 3268 -4 1283 193 7 44 chr3 71133857 71134131 -156390447 - AluJo SINE Alu -10 302 39 1497 177 3 66 chr3 71134192 71134525 -156390053 + AluJo SINE Alu 1 312 0 280 270 126 27 chr3 71135081 71135192 -156389386 - L2 LINE L2 -1 3312 3191 1253 202 114 60 chr3 71135198 71135674 -156388904 - MER39 LTR ERV1 0 707 90 832 143 7 45 chr3 71135676 71135830 -156388748 + AluJo SINE Alu 65 212 -100 258 282 45 36 chr3 71136670 71136780 -156387798 + MIR SINE MIR 37 147 -115 272 307 161 5 chr3 71136817 71137022 -156387556 + L2 LINE L2 3077 3313 0 365 279 16 33 chr3 71137886 71138008 -156386570 + MER117 DNA MER1_type 12 131 -66 2359 99 0 0 chr3 71138206 71138509 -156386069 + AluSc SINE Alu 1 303 -6 433 263 112 34 chr3 71138713 71138918 -156385660 + MIR SINE MIR 6 226 -36 1290 109 6 6 chr3 71138981 71139156 -156385422 + AluSx SINE Alu 1 175 -137 188 344 0 43 chr3 71139657 71139750 -156384828 - MIR SINE MIR -115 147 59 830 315 26 12 chr3 71139925 71140271 -156384307 + L1MC4a LINE L1 5495 5845 -1963 25 0 0 0 chr3 71140560 71140585 -156383993 + AT_rich Low_complexity Low_complexity 1 25 0 1889 219 158 2 chr3 71140793 71141282 -156383296 + MLT1F1 LTR MaLR 3 567 0 912 147 15 0 chr3 71141665 71141801 -156382777 + AluJb SINE Alu 1 138 -174 182 62 31 0 chr3 71141821 71141853 -156382725 + (TAAAAA)n Simple_repeat Simple_repeat 3 35 0 326 273 102 39 chr3 71141894 71142022 -156382556 + L2 LINE L2 3137 3272 0 328 336 75 0 chr3 71142031 71142152 -156382426 + MIR SINE MIR 82 217 -45 3213 129 82 4 chr3 71142152 71142641 -156381937 - MER1A DNA MER1_type 0 527 1 328 336 75 0 chr3 71142641 71142665 -156381913 + MIR SINE MIR 217 238 -24 1899 151 10 6 chr3 71143213 71143524 -156381054 + AluJb SINE Alu 1 312 0 315 0 0 0 chr3 71144235 71144270 -156380308 + (CA)n Simple_repeat Simple_repeat 2 36 0 1429 201 3 21 chr3 71144321 71144604 -156379974 + AluJo SINE Alu 14 291 -21 247 301 29 44 chr3 71145212 71145348 -156379230 + MIR SINE MIR 65 198 -64 571 167 78 150 chr3 71145404 71145584 -156378994 - MER20 DNA MER1_type 0 219 53 428 270 35 63 chr3 71146251 71146425 -156378153 - MIR SINE MIR -27 235 67 669 148 7 78 chr3 71146433 71146575 -156378003 + FLAM_A SINE Alu 10 141 -1 951 174 0 143 chr3 71146637 71146895 -156377683 + MER58A DNA MER1_type 1 221 -3 283 259 109 54 chr3 71148238 71148385 -156376193 + MIR SINE MIR 14 168 -94 5927 20 0 3 chr3 71149432 71150065 -156374513 - SVA Other Other 0 1386 756 1889 147 21 0 chr3 71154274 71154560 -156370018 + AluJo SINE Alu 5 296 -16 6011 73 23 20 chr3 71155106 71156095 -156368483 - SVA Other Other -520 866 1 423 98 0 0 chr3 71156098 71156159 -156368419 + (GGGAGA)n Simple_repeat Simple_repeat 3 63 0 1599 155 16 35 chr3 71156198 71156515 -156368063 + AluJb SINE Alu 1 311 -1 648 231 0 14 chr3 71156924 71157071 -156367507 - L1PB4 LINE L1 -6 6150 6006 2457 60 36 3 chr3 71157178 71157512 -156367066 + L1PA7 LINE L1 5810 6154 0 1099 109 0 0 chr3 71157685 71157832 -156366746 + AluSg/x SINE Alu 158 304 -6 285 253 82 82 chr3 71158970 71159140 -156365438 + L1MC5 LINE L1 7744 7913 -48 2540 66 0 0 chr3 71159500 71159801 -156364777 + AluY SINE Alu 4 304 -7 183 42 0 0 chr3 71159870 71159894 -156364684 + (CA)n Simple_repeat Simple_repeat 1 24 0 2462 86 0 0 chr3 71160287 71160590 -156363988 + AluSg SINE Alu 1 303 -7 312 302 18 59 chr3 71160611 71160780 -156363798 - MIR SINE MIR -24 238 77 1952 146 19 10 chr3 71162825 71163133 -156361445 + AluSx SINE Alu 1 311 -1 398 237 0 11 chr3 71163498 71163591 -156360987 - MER94 DNA DNA -41 93 2 234 91 0 0 chr3 71164377 71164410 -156360168 + (A)n Simple_repeat Simple_repeat 1 33 0 350 313 46 0 chr3 71164931 71165062 -156359516 + MIR SINE MIR 125 261 -1 2131 123 3 3 chr3 71165190 71165490 -156359088 + AluSx SINE Alu 1 300 -12 857 236 62 11 chr3 71165515 71165791 -156358787 + L1MC4 LINE L1 7705 7994 -48 187 197 148 16 chr3 71168224 71168285 -156356293 + MIR SINE MIR 41 109 -153 335 319 0 0 chr3 71168315 71168409 -156356169 + CT-rich Low_complexity Low_complexity 3 96 0 254 176 0 0 chr3 71168426 71168477 -156356101 + MIR SINE MIR 156 206 -56 2140 125 0 7 chr3 71168809 71169112 -156355466 + AluSx SINE Alu 1 301 -11 835 311 47 36 chr3 71169419 71169889 -156354689 + L1MC4a LINE L1 5421 5895 -1913 186 118 0 0 chr3 71169946 71169980 -156354598 + (TC)n Simple_repeat Simple_repeat 1 34 0 2411 101 0 0 chr3 71170088 71170395 -156354183 - AluSq SINE Alu -5 308 2 2153 135 0 0 chr3 71171305 71171609 -156352969 + AluSq SINE Alu 1 304 -9 295 314 44 44 chr3 71171920 71172079 -156352499 + MIR SINE MIR 29 187 -75 326 252 202 25 chr3 71172082 71172201 -156352377 + MER34 LTR ERV1 1 140 -402 * 1452 194 118 65 chr3 71172172 71172331 -156352247 + MER39 LTR ERV1 218 367 -340 2720 162 179 22 chr3 71172331 71173011 -156351567 + LTR48 LTR ERV1 1 787 0 1452 194 118 65 chr3 71173011 71173316 -156351262 + MER39 LTR ERV1 367 707 0 1090 187 30 0 chr3 71173383 71173586 -156350992 - MER58A DNA MER1_type -15 209 1 342 267 69 20 chr3 71173566 71173667 -156350911 - MER58A DNA MER1_type 0 107 2 * 1347 134 23 145 chr3 71173673 71173888 -156350690 - Charlie1 DNA MER1_type 0 2761 2521 3198 34 0 3 chr3 71173888 71174266 -156350312 + L1PA4 LINE L1 5776 6152 -3 1347 134 23 145 chr3 71174266 71174556 -156350022 - Charlie1 DNA MER1_type -240 2521 5 1509 176 40 7 chr3 71176701 71176979 -156347599 + AluJb SINE Alu 1 287 -25 235 120 20 20 chr3 71177001 71177051 -156347527 + GA-rich Low_complexity Low_complexity 4 53 0 2198 123 0 0 chr3 71177063 71177364 -156347214 - AluSx SINE Alu -11 301 1 225 232 14 14 chr3 71177446 71177515 -156347063 - MIR SINE MIR -96 166 98 971 239 150 40 chr3 71177630 71178077 -156346501 - L1ME3 LINE L1 -26 6136 5641 212 284 90 0 chr3 71178651 71178718 -156345860 + MIR SINE MIR 73 145 -117 396 214 41 0 chr3 71179293 71179391 -156345187 + MIR SINE MIR 92 193 -69 320 137 260 14 chr3 71179396 71179469 -156345109 - MER20 DNA MER1_type 0 219 129 460 133 189 11 chr3 71179576 71179666 -156344912 - MER20 DNA MER1_type -98 121 16 2372 84 13 0 chr3 71181578 71181876 -156342702 - AluSq SINE Alu -11 302 1 24 0 0 0 chr3 71181878 71181902 -156342676 + AT_rich Low_complexity Low_complexity 1 24 0 338 283 101 64 chr3 71182100 71182346 -156342232 - L1MC4a LINE L1 -1925 5883 5648 1925 211 72 28 chr3 71182346 71182844 -156341734 - MLT2B1 LTR ERVL 0 520 1 338 283 101 64 chr3 71182844 71182857 -156341721 - L1MC4a LINE L1 -2160 5648 5637 1936 155 0 25 chr3 71182857 71183173 -156341405 - AluJb SINE Alu -2 310 3 338 283 101 64 chr3 71183173 71183287 -156341291 - L1MC4a LINE L1 -2171 5637 5495 2273 70 22 35 chr3 71183530 71183843 -156340735 - AluY SINE Alu -2 309 1 278 250 129 26 chr3 71184178 71184294 -156340284 - MIR SINE MIR -74 188 61 2089 148 0 0 chr3 71184391 71184701 -156339877 - AluSx SINE Alu -2 310 1 332 198 161 0 chr3 71184723 71184804 -156339774 + MER58 DNA MER1_type 2318 2411 -9 202 194 0 0 chr3 71184884 71184920 -156339658 - MER5A DNA MER1_type 0 189 154 696 204 167 0 chr3 71184925 71185087 -156339491 - MER5A DNA MER1_type 0 189 1 468 299 21 26 chr3 71185387 71185581 -156338997 - MIR SINE MIR -1 261 69 1679 93 26 9 chr3 71185593 71185819 -156338759 - MER30 DNA MER1_type 0 230 1 6715 63 4 0 chr3 71185858 71186702 -156337876 - L1PA7 LINE L1 0 6154 5308 987 80 22 0 chr3 71186692 71186829 -156337749 + L1PA7 LINE L1 5156 5295 -851 * 2485 80 0 0 chr3 71186980 71187280 -156337298 - AluSq SINE Alu -13 300 1 24 77 0 0 chr3 71187322 71187374 -156337204 + AT_rich Low_complexity Low_complexity 1 52 0 2154 113 66 30 chr3 71187490 71187852 -156336726 + THE1C LTR MaLR 1 375 0 2216 86 3 40 chr3 71188251 71188555 -156336023 - AluSg SINE Alu -15 295 3 238 259 35 95 chr3 71188562 71188678 -156335900 - L2 LINE L2 -11 3302 3194 221 262 0 0 chr3 71189111 71189153 -156335425 + MIR3 SINE MIR 139 180 -28 845 249 199 10 chr3 71189309 71189606 -156334972 + MLT1J LTR MaLR 7 359 -152 226 330 44 33 chr3 71189620 71189711 -156334867 + MER91A DNA MER1_type 16 107 -89 235 341 98 0 chr3 71189758 71189840 -156334738 + MER91A DNA MER1_type 93 182 -14 305 260 13 93 chr3 71189848 71189998 -156334580 + MLT1J LTR MaLR 374 511 0 186 103 0 0 chr3 71190256 71190285 -156334293 + (T)n Simple_repeat Simple_repeat 1 29 0 1833 141 10 20 chr3 71190299 71190605 -156333973 - AluJb SINE Alu -9 303 1 2171 119 0 3 chr3 71191777 71192080 -156332498 + AluSg SINE Alu 1 302 -8 408 164 14 0 chr3 71192369 71192442 -156332136 - MIR SINE MIR -78 184 111 2169 118 0 10 chr3 71192592 71192896 -156331682 + AluSc SINE Alu 1 301 -8 2019 138 10 6 chr3 71192985 71193296 -156331282 + AluSx SINE Alu 1 312 0 646 251 83 54 chr3 71194855 71195205 -156329373 + L2 LINE L2 2859 3218 -95 2043 129 0 20 chr3 71195208 71195510 -156329068 - AluSx SINE Alu -16 296 1 714 226 90 14 chr3 71195518 71195730 -156328848 - L1ME3A LINE L1 0 6170 5943 189 154 0 26 chr3 71195730 71195769 -156328809 + L2 LINE L2 3209 3246 -67 371 319 28 21 chr3 71196471 71196615 -156327963 + MER91B DNA MER1_type 41 185 -5 344 257 101 39 chr3 71196822 71197001 -156327577 - MLT1L LTR MaLR 0 615 426 1815 199 90 11 chr3 71197116 71197309 -156327269 - MSTD LTR MaLR 0 396 220 219 69 0 0 chr3 71197309 71197338 -156327240 + (CA)n Simple_repeat Simple_repeat 2 30 0 1815 199 90 11 chr3 71197338 71197511 -156327067 - MSTD LTR MaLR -176 220 1 3216 224 67 67 chr3 71198662 71199036 -156325542 - L1MC3 LINE L1 0 7785 7413 1903 124 60 7 chr3 71199036 71199319 -156325259 + AluSx SINE Alu 1 298 -14 3216 224 67 67 chr3 71199319 71200249 -156324329 - L1MC3 LINE L1 -372 7413 4964 1051 151 245 5 chr3 71200265 71200477 -156324101 - AluJb SINE Alu -22 290 28 1275 190 8 11 chr3 71200501 71200764 -156323814 - L1MC3 LINE L1 -1199 4947 4686 2470 64 0 0 chr3 71201853 71202150 -156322428 + AluY SINE Alu 1 297 -14 1145 149 257 25 chr3 71202298 71202539 -156322039 - AluSx SINE Alu -5 297 1 1096 235 86 29 chr3 71202543 71202917 -156321661 - LTR37B LTR ERV1 -16 452 58 180 236 9 136 chr3 71203330 71203393 -156321185 + MIR SINE MIR 153 198 -64 1851 158 3 16 chr3 71203393 71203696 -156320882 + AluJo SINE Alu 7 305 -7 180 236 9 136 chr3 71203696 71203742 -156320836 + MIR SINE MIR 198 248 -14 1310 205 0 82 chr3 71203845 71204176 -156320402 + AluJb SINE Alu 4 309 0 241 326 89 11 chr3 71204285 71204475 -156320103 - Charlie8 DNA MER1_type -2153 264 60 242 116 139 233 chr3 71204801 71204973 -156319605 + L1ME4a LINE L1 5963 6118 -3 254 376 53 0 chr3 71205585 71205718 -156318860 + MER5A DNA MER1_type 2 141 -48 2365 91 3 3 chr3 71206425 71206734 -156317844 - AluSc SINE Alu 0 309 1 853 162 66 61 chr3 71206844 71206883 -156317695 - Charlie5 DNA MER1_type -3 2621 2584 2032 143 7 7 chr3 71206883 71207191 -156317387 - AluSx SINE Alu -4 308 1 853 162 66 61 chr3 71207191 71207379 -156317199 - Charlie5 DNA MER1_type -40 2584 2393 1920 54 0 0 chr3 71207383 71207606 -156316972 + AluY SINE Alu 1 223 -88 1616 63 0 0 chr3 71207606 71207845 -156316733 + AluY SINE Alu 92 330 0 620 296 23 23 chr3 71208433 71208653 -156315925 + MIR SINE MIR 41 260 -2 1570 174 64 0 chr3 71208876 71209165 -156315413 - AluJb SINE Alu 0 306 1 2292 94 3 3 chr3 71210992 71211291 -156313287 - AluSx SINE Alu -13 299 1 26 0 0 0 chr3 71211291 71211317 -156313261 + AT_rich Low_complexity Low_complexity 1 26 0 306 186 0 43 chr3 71211896 71211966 -156312612 + L1MB8 LINE L1 6044 6110 -68 229 200 22 0 chr3 71212394 71212439 -156312139 + L2 LINE L2 3139 3184 -88 2381 44 41 7 chr3 71212990 71213283 -156311295 - AluY SINE Alu -8 303 1 951 96 0 0 chr3 71213342 71213478 -156311100 + (TA)n Simple_repeat Simple_repeat 1 136 0 649 64 0 0 chr3 71213677 71213755 -156310823 - AluY SINE Alu -18 293 216 815 215 68 16 chr3 71213895 71214086 -156310492 - AluJb SINE Alu -7 305 105 711 128 0 17 chr3 71214100 71214217 -156310361 - FLAM_C SINE Alu 0 143 29 525 58 0 0 chr3 71214249 71214318 -156310260 - HY3 scRNA scRNA -1 100 32 380 304 81 57 chr3 71214872 71215204 -156309374 - MER102b DNA MER1_type 0 341 2 198 0 0 0 chr3 71217524 71217546 -156307032 + (T)n Simple_repeat Simple_repeat 1 22 0 1815 155 13 16 chr3 71219448 71219752 -156304826 - MER7A DNA MER2_type -44 302 2 2455 57 10 0 chr3 71220172 71220469 -156304109 - AluSc SINE Alu -9 300 1 25 31 0 0 chr3 71221122 71221154 -156303424 + AT_rich Low_complexity Low_complexity 1 32 0 1288 129 26 52 chr3 71221159 71221329 -156303249 - AluJb SINE Alu -2 310 146 1462 76 62 19 chr3 71221329 71221540 -156303038 - AluY SINE Alu -9 302 83 1288 129 26 52 chr3 71221540 71221601 -156302977 - AluJb SINE Alu -166 146 85 262 209 124 67 chr3 71221752 71221857 -156302721 - MLT1K LTR MaLR -366 222 121 1371 188 113 0 chr3 71221984 71222250 -156302328 + AluJo SINE Alu 1 296 -16 251 388 26 0 chr3 71222260 71222376 -156302202 - MIR SINE MIR -30 232 114 349 338 95 0 chr3 71223383 71223531 -156301047 + MIR SINE MIR 29 190 -72 356 271 19 109 chr3 71223575 71223785 -156300793 + MIR SINE MIR 52 242 -20 21 0 0 0 chr3 71223800 71223821 -156300757 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 71225335 71225357 -156299221 + AT_rich Low_complexity Low_complexity 1 22 0 1453 232 62 6 chr3 71226521 71226844 -156297734 - MER58B DNA MER1_type 0 341 1 272 259 0 137 chr3 71227551 71227643 -156296935 + MIR SINE MIR 134 204 -58 2344 73 0 13 chr3 71227643 71227946 -156296632 + AluY SINE Alu 1 299 -12 272 259 0 137 chr3 71227946 71227984 -156296594 + MIR SINE MIR 204 246 -16 599 229 136 7 chr3 71228188 71228328 -156296250 + MER58A DNA MER1_type 1 158 0 287 85 21 43 chr3 71228397 71228444 -156296134 + MER58A DNA MER1_type 170 215 -9 2205 102 23 7 chr3 71228445 71228748 -156295830 + AluSg SINE Alu 1 308 -2 2044 126 0 35 chr3 71229521 71229831 -156294747 - AluSx SINE Alu -13 299 1 1892 129 3 52 chr3 71230913 71231243 -156293335 - AluSx SINE Alu 0 314 1 22 0 0 0 chr3 71231387 71231409 -156293169 + AT_rich Low_complexity Low_complexity 1 22 0 229 354 31 0 chr3 71231465 71231530 -156293048 - L2 LINE L2 0 3272 3206 316 239 259 30 chr3 71232834 71233031 -156291547 + L1MC/D LINE L1 5560 5801 -2007 26 50 0 0 chr3 71233185 71233225 -156291353 + AT_rich Low_complexity Low_complexity 1 40 0 309 150 0 50 chr3 71233997 71234057 -156290521 - AluJb SINE Alu 0 302 246 831 196 65 13 chr3 71234064 71234217 -156290361 - AluJb SINE Alu -147 165 5 1935 114 0 4 chr3 71234399 71234654 -156289924 - AluSx SINE Alu -25 287 34 1736 143 18 14 chr3 71235313 71235593 -156288985 + AluJb SINE Alu 7 287 -25 872 232 130 9 chr3 71235705 71236050 -156288528 - MER113 DNA MER1_type? -90 431 45 4945 100 28 35 chr3 71236534 71237229 -156287349 - L1PA10 LINE L1 -1 6167 5475 2099 116 3 7 chr3 71237229 71237545 -156287033 + AluSx SINE Alu 1 315 0 4945 100 28 35 chr3 71237545 71237627 -156286951 - L1PA10 LINE L1 -693 5475 5394 1784 111 58 0 chr3 71238277 71238538 -156286040 + AluSq SINE Alu 1 276 -37 508 339 47 33 chr3 71238806 71239107 -156285471 - MLT1L LTR MaLR -179 436 132 1626 147 42 18 chr3 71239179 71239465 -156285113 - AluSx SINE Alu -19 293 1 889 110 0 0 chr3 71239487 71239605 -156284973 - AluSq/x SINE Alu -195 118 1 1076 194 0 0 chr3 71239792 71239983 -156284595 - MER3 DNA MER1_type -18 191 1 597 269 121 41 chr3 71240266 71240604 -156283974 - L2 LINE L2 0 3313 2949 1061 206 14 23 chr3 71240738 71240957 -156283621 + MER20 DNA MER1_type 2 218 -1 1933 156 7 10 chr3 71242543 71242845 -156281733 - AluSx SINE Alu -11 301 1 249 33 0 0 chr3 71242951 71242981 -156281597 + (A)n Simple_repeat Simple_repeat 1 30 0 1967 159 0 10 chr3 71243407 71243715 -156280863 + AluJb SINE Alu 1 305 -7 21 71 0 0 chr3 71243779 71243821 -156280757 + AT_rich Low_complexity Low_complexity 1 42 0 385 250 0 0 chr3 71244312 71244400 -156280178 + MER103 DNA DNA 2 89 -77 1551 191 10 23 chr3 71244986 71245289 -156279289 - AluJo SINE Alu -7 305 7 276 258 52 72 chr3 71245557 71245654 -156278924 - MER20 DNA MER1_type -120 99 5 2244 117 3 0 chr3 71247501 71247809 -156276769 + AluSx SINE Alu 1 309 -3 36 53 0 0 chr3 71248140 71248197 -156276381 + AT_rich Low_complexity Low_complexity 1 57 0 370 324 111 15 chr3 71248332 71248594 -156275984 - L1MC4a LINE L1 -1930 5878 5592 270 289 160 19 chr3 71249241 71249397 -156275181 - MIR SINE MIR 0 262 85 2126 131 0 0 chr3 71249501 71249791 -156274787 - AluSx SINE Alu -17 295 6 1912 151 0 0 chr3 71250808 71251092 -156273486 - AluSx SINE Alu -28 284 1 3693 36 0 0 chr3 71251393 71251809 -156272769 + L1PA4 LINE L1 5737 6152 -3 184 368 71 19 chr3 71252642 71252797 -156271781 + L2 LINE L2 3096 3258 -14 1228 135 62 5 chr3 71252905 71253098 -156271480 + MER3 DNA MER1_type 2 205 -4 264 203 29 29 chr3 71253136 71253205 -156271373 - L2 LINE L2 -2 3311 3243 186 43 0 0 chr3 71253715 71253738 -156270840 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 1769 128 105 25 chr3 71253829 71254336 -156270242 - MER51A LTR ERV1 -9 625 1 316 316 20 62 chr3 71254492 71254731 -156269847 - L2 LINE L2 -307 3006 2781 183 42 0 0 chr3 71254777 71254801 -156269777 + (CA)n Simple_repeat Simple_repeat 2 25 0 515 217 42 8 chr3 71255660 71255780 -156268798 + LTR16C LTR ERVL 368 491 0 298 247 75 21 chr3 71256156 71256249 -156268329 + Charlie8 DNA MER1_type 26 123 -2294 29 0 0 0 chr3 71257130 71257159 -156267419 + AT_rich Low_complexity Low_complexity 1 29 0 1468 185 0 11 chr3 71257456 71257716 -156266862 - AluJo SINE Alu -16 296 40 234 0 0 0 chr3 71258512 71258538 -156266040 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1707 165 18 28 chr3 71258545 71258830 -156265748 - AluJo SINE Alu -30 282 1 1178 174 15 0 chr3 71258878 71259074 -156265504 + AluJo SINE Alu 95 293 -19 1215 207 103 41 chr3 71264011 71264378 -156260200 - Charlie4a DNA MER1_type -97 411 22 749 234 91 24 chr3 71264390 71264599 -156259979 - MER58A DNA MER1_type 0 224 2 1454 199 22 22 chr3 71264811 71265123 -156259455 - AluJb SINE Alu 0 312 1 189 298 85 32 chr3 71265137 71265231 -156259347 - L2 LINE L2 -67 3246 3148 256 256 35 0 chr3 71265776 71265862 -156258716 + MER117 DNA MER1_type 68 156 -41 2251 104 0 0 chr3 71267214 71267503 -156257075 - AluSx SINE Alu -23 289 1 1152 163 4 98 chr3 71267944 71268208 -156256370 - AluJo SINE Alu -39 273 35 1962 109 4 4 chr3 71268387 71268700 -156255878 - AluSc SINE Alu 0 326 14 735 324 80 0 chr3 71270705 71270943 -156253635 - MIR SINE MIR -3 259 3 285 218 150 75 chr3 71270997 71271047 -156253531 + MIR SINE MIR 105 150 -112 2296 96 10 26 chr3 71271047 71271359 -156253219 + AluSx SINE Alu 1 307 -5 285 218 150 75 chr3 71271359 71271455 -156253123 + MIR SINE MIR 150 262 0 266 291 47 27 chr3 71272935 71273083 -156251495 + MER104 DNA Tc2 30 180 0 214 324 14 0 chr3 71273545 71273619 -156250959 + GA-rich Low_complexity Low_complexity 4 78 0 22 0 0 0 chr3 71274311 71274333 -156250245 + AT_rich Low_complexity Low_complexity 1 22 0 2033 169 52 3 chr3 71274663 71275030 -156249548 - L1MC3 LINE L1 -189 7596 7212 247 293 0 12 chr3 71275039 71275121 -156249457 - MLT1F1 LTR MaLR -439 128 48 718 243 96 9 chr3 71275218 71275436 -156249142 + MIR SINE MIR 17 253 -9 2205 84 32 3 chr3 71275953 71276237 -156248341 - AluSq SINE Alu -21 292 1 999 109 22 0 chr3 71276604 71276742 -156247836 - AluJb SINE Alu -13 299 159 207 204 0 23 chr3 71276771 71276815 -156247763 + GA-rich Low_complexity Low_complexity 5 47 0 1744 97 23 31 chr3 71277076 71277333 -156247245 + AluSg SINE Alu 42 296 -14 257 268 0 28 chr3 71277884 71277955 -156246623 - MER94 DNA DNA -46 88 20 502 229 127 0 chr3 71278272 71278390 -156246188 + MER58A DNA MER1_type 4 136 0 242 130 65 0 chr3 71278391 71278437 -156246141 + MER58A DNA MER1_type 169 217 -7 1316 180 7 33 chr3 71278460 71278766 -156245812 - MER33 DNA MER1_type -22 302 5 22 0 0 0 chr3 71279972 71279994 -156244584 + AT_rich Low_complexity Low_complexity 1 22 0 1169 190 33 0 chr3 71280440 71280651 -156243927 + MER20 DNA MER1_type 1 218 -1 189 0 0 0 chr3 71280823 71280844 -156243734 + (A)n Simple_repeat Simple_repeat 1 21 0 199 250 0 0 chr3 71283621 71283669 -156240909 + MER5B DNA MER1_type 1 48 -130 24 0 0 0 chr3 71284212 71284236 -156240342 + AT_rich Low_complexity Low_complexity 1 24 0 537 283 96 15 chr3 71284249 71284447 -156240131 + MIR SINE MIR 49 262 0 229 290 80 10 chr3 71284863 71284963 -156239615 + MIR SINE MIR 132 238 -24 228 292 54 46 chr3 71285000 71285130 -156239448 - L2 LINE L2 -454 2860 2730 227 152 101 51 chr3 71285205 71285284 -156239294 - MLT1L LTR MaLR -332 283 201 180 0 0 0 chr3 71287496 71287516 -156237062 + (TG)n Simple_repeat Simple_repeat 1 20 0 288 0 0 0 chr3 71287571 71287603 -156236975 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 1879 125 18 79 chr3 71288506 71288834 -156235744 + AluSx SINE Alu 1 308 -4 441 0 0 0 chr3 71288836 71288885 -156235693 + (TG)n Simple_repeat Simple_repeat 2 50 0 239 292 158 8 chr3 71288959 71289079 -156235499 - MIR SINE MIR -1 261 124 342 290 108 45 chr3 71289119 71289183 -156235395 - MIR SINE MIR -40 222 163 2160 93 0 42 chr3 71289183 71289493 -156235085 - AluSx SINE Alu -15 297 1 342 290 108 45 chr3 71289493 71289604 -156234974 - MIR SINE MIR -99 163 36 346 333 7 14 chr3 71290098 71290236 -156234342 - MIR SINE MIR -18 244 108 1643 157 28 53 chr3 71290407 71290726 -156233852 + AluSx SINE Alu 1 311 -1 397 313 0 0 chr3 71291043 71291139 -156233439 - L2 LINE L2 -3 3310 3215 285 235 44 0 chr3 71291375 71291443 -156233135 - MIR3 SINE MIR -35 173 103 2031 128 3 10 chr3 71291540 71291837 -156232741 + AluSx SINE Alu 1 295 -17 180 374 0 12 chr3 71292013 71292096 -156232482 - L2 LINE L2 -690 2624 2543 462 48 111 8 chr3 71292267 71292527 -156232051 + (TA)n Simple_repeat Simple_repeat 1 286 0 818 239 0 17 chr3 71293807 71293987 -156230591 + AluJb SINE Alu 134 310 -2 421 300 37 47 chr3 71294305 71294605 -156229973 + HAL1b LINE L1 339 635 -713 959 251 38 62 chr3 71294762 71295181 -156229397 + L1MC5 LINE L1 7168 7576 -385 1060 186 217 94 chr3 71295394 71295850 -156228728 - MLT2B1 LTR ERVL -6 514 3 225 0 0 0 chr3 71295897 71295922 -156228656 + (T)n Simple_repeat Simple_repeat 1 25 0 2296 79 0 0 chr3 71296458 71296761 -156227817 - AluY SINE Alu -8 303 1 193 351 63 9 chr3 71296823 71296934 -156227644 - MIR SINE MIR -101 161 45 408 286 8 0 chr3 71297089 71297208 -156227370 - MIR SINE MIR -48 214 95 186 297 27 27 chr3 71297308 71297382 -156227196 - MIR SINE MIR -129 133 60 2149 117 7 3 chr3 71298479 71298779 -156225799 - AluSc SINE Alu -8 301 1 23 0 0 0 chr3 71298932 71298955 -156225623 + AT_rich Low_complexity Low_complexity 1 23 0 2289 61 7 14 chr3 71299137 71299431 -156225147 + AluY SINE Alu 1 292 -19 1247 199 162 0 chr3 71299849 71300090 -156224488 + AluJo SINE Alu 11 290 -22 1534 188 0 33 chr3 71300943 71301246 -156223332 - AluJo SINE Alu -19 293 1 198 318 0 0 chr3 71301284 71301350 -156223228 + MIR SINE MIR 179 244 -18 255 309 18 0 chr3 71302064 71302174 -156222404 + MER46C DNA MER2_type 2 113 -225 386 309 76 60 chr3 71302214 71302583 -156221995 + MLT1I LTR MaLR 27 401 -8 196 324 36 36 chr3 71303623 71303734 -156220844 - L2 LINE L2 0 3313 3203 2330 88 3 7 chr3 71305858 71306165 -156218413 - AluSp SINE Alu -7 306 1 207 0 0 0 chr3 71306758 71306781 -156217797 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 608 304 92 12 chr3 71307589 71307829 -156216749 - MIR SINE MIR 0 262 4 280 241 52 0 chr3 71307885 71307943 -156216635 - MIR SINE MIR -90 172 112 23 0 0 0 chr3 71307975 71307998 -156216580 + AT_rich Low_complexity Low_complexity 1 23 0 2457 121 33 8 chr3 71308002 71308359 -156216219 - L1PB1 LINE L1 -2 6149 5780 261 0 0 0 chr3 71308359 71308388 -156216190 + (TG)n Simple_repeat Simple_repeat 2 30 0 2457 121 33 8 chr3 71308388 71308426 -156216152 - L1PB1 LINE L1 -371 5780 5744 2172 112 3 6 chr3 71308844 71309156 -156215422 - AluSx SINE Alu -1 311 1 685 177 80 0 chr3 71309707 71309820 -156214758 + FLAM_A SINE Alu 1 122 -11 2100 110 7 0 chr3 71309825 71310107 -156214471 + AluSq SINE Alu 1 284 -29 25 0 0 0 chr3 71310128 71310153 -156214425 + AT_rich Low_complexity Low_complexity 1 25 0 362 332 37 37 chr3 71310568 71310782 -156213796 - MIR SINE MIR -1 261 48 2117 112 0 22 chr3 71310802 71310977 -156213601 - AluSx SINE Alu -5 307 141 1923 147 7 13 chr3 71310977 71311276 -156213302 - AluSx SINE Alu -13 299 3 2117 112 0 22 chr3 71311276 71311414 -156213164 - AluSx SINE Alu -171 141 1 1403 184 119 14 chr3 71311809 71312162 -156212416 - MLT1B LTR MaLR 0 390 1 300 296 98 0 chr3 71313727 71313859 -156210719 - L1ME4a LINE L1 -4 6117 5973 354 321 107 16 chr3 71314101 71314344 -156210234 - L1ME4a LINE L1 -166 5955 5691 2145 117 6 19 chr3 71314834 71315150 -156209428 - AluSx SINE Alu 0 312 1 249 102 0 0 chr3 71315851 71315900 -156208678 + Alu SINE Alu 252 300 0 246 62 0 0 chr3 71316748 71316780 -156207798 + (A)n Simple_repeat Simple_repeat 1 32 0 542 234 43 16 chr3 71316780 71317018 -156207560 + MLT1J2 LTR MaLR 120 436 -14 206 254 0 30 chr3 71317411 71317478 -156207100 + (CATA)n Simple_repeat Simple_repeat 2 66 0 2242 94 3 3 chr3 71318029 71318327 -156206251 - AluSx SINE Alu -14 298 1 771 102 4 181 chr3 71318392 71318582 -156205996 - MER53 DNA DNA -3 186 41 1532 195 0 34 chr3 71318582 71318879 -156205699 - AluJo SINE Alu -25 287 1 771 102 4 181 chr3 71318879 71318914 -156205664 - MER53 DNA DNA -148 41 1 234 262 78 78 chr3 71319030 71319133 -156205445 + L2 LINE L2 3169 3271 -1 204 400 0 0 chr3 71319399 71319499 -156205079 + L3b LINE CR1 1356 1455 -128 527 323 58 17 chr3 71320028 71320260 -156204318 + MIR SINE MIR 8 256 -6 199 299 77 111 chr3 71320491 71320608 -156203970 + MIR SINE MIR 18 130 -132 200 254 0 79 chr3 71320624 71320687 -156203891 + L2 LINE L2 3195 3252 -20 1918 156 3 0 chr3 71320718 71321001 -156203577 + AluJb SINE Alu 5 288 -24 477 176 33 0 chr3 71321024 71321114 -156203464 - MER3 DNA MER1_type 0 209 117 1854 208 21 19 chr3 71321114 71321580 -156202998 + MLT1C LTR MaLR 1 467 0 367 245 75 0 chr3 71321580 71321686 -156202892 - MER3 DNA MER1_type -88 121 8 420 268 49 35 chr3 71322866 71323008 -156201570 - MIR SINE MIR -16 246 103 2070 114 13 7 chr3 71324224 71324530 -156200048 - AluSx SINE Alu 0 312 5 456 202 0 0 chr3 71326017 71326111 -156198467 + MLT1J2 LTR MaLR 474 567 0 202 342 105 44 chr3 71326657 71326771 -156197807 - MIR SINE MIR -67 141 21 526 271 110 30 chr3 71327059 71327295 -156197283 - L2 LINE L2 -3 3310 3056 1644 244 72 22 chr3 71327304 71327803 -156196775 + MLT1F LTR MaLR 15 538 -4 236 321 0 24 chr3 71327877 71327961 -156196617 + MLT1K LTR MaLR 95 176 -412 231 255 61 31 chr3 71328392 71328490 -156196088 + MIR SINE MIR 114 214 -48 180 0 0 0 chr3 71329724 71329744 -156194834 + (T)n Simple_repeat Simple_repeat 1 20 0 1078 168 19 19 chr3 71330206 71330420 -156194158 - L1MB5 LINE L1 -2 6172 5959 331 333 39 43 chr3 71330602 71330836 -156193742 - L1MC4a LINE L1 -1810 5998 5766 288 324 38 0 chr3 71331283 71331388 -156193190 - MIR SINE MIR -64 144 36 520 204 65 75 chr3 71331910 71332096 -156192482 - MER20 DNA MER1_type -2 217 34 226 341 12 0 chr3 71333384 71333469 -156191109 - MIR SINE MIR -130 132 47 187 273 55 36 chr3 71333947 71334002 -156190576 + L2 LINE L2 3238 3293 -20 2256 107 0 10 chr3 71334504 71334813 -156189765 - AluSx SINE Alu -6 306 1 1466 207 80 7 chr3 71334817 71335220 -156189358 - L1MD2 LINE L1 0 6242 5809 1170 159 103 5 chr3 71336071 71336335 -156188243 + MER1B DNA MER1_type 1 333 0 2139 96 3 45 chr3 71336449 71336762 -156187816 - AluSp SINE Alu -13 300 1 343 300 0 46 chr3 71336957 71337087 -156187491 + MIR3 SINE MIR 82 205 -3 383 265 33 72 chr3 71338024 71338205 -156186373 + MIR SINE MIR 10 183 -79 325 342 149 5 chr3 71339358 71339580 -156184998 - MIR SINE MIR 0 262 9 2271 103 3 0 chr3 71340647 71340949 -156183629 - AluSc SINE Alu -6 303 1 337 254 42 85 chr3 71341596 71341714 -156182864 - MIR SINE MIR -73 135 23 182 294 29 39 chr3 71342182 71342284 -156182294 - MIR SINE MIR -12 250 150 277 297 80 67 chr3 71342337 71342576 -156182002 + L2 LINE L2 2720 2961 -353 282 29 0 0 chr3 71343608 71343643 -156180935 + (TCCCC)n Simple_repeat Simple_repeat 4 38 0 1494 190 45 0 chr3 71343650 71343799 -156180779 - AluJb SINE Alu -32 280 112 315 0 0 0 chr3 71343799 71343834 -156180744 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1494 190 45 0 chr3 71343834 71343952 -156180626 - AluJb SINE Alu -200 112 1 496 213 0 0 chr3 71344093 71344187 -156180391 - MLT1A1 LTR MaLR -269 96 3 1415 116 11 191 chr3 71344366 71344728 -156179850 - AluY SINE Alu -10 301 5 256 229 18 31 chr3 71345060 71345137 -156179441 + MIR3 SINE MIR 104 181 -27 926 42 0 8 chr3 71345160 71345280 -156179298 + (TTATG)n Simple_repeat Simple_repeat 4 122 0 1320 165 123 31 chr3 71345280 71345540 -156179038 - AluJo SINE Alu -28 284 1 648 235 148 0 chr3 71346263 71346412 -156178166 + FAM SINE Alu 1 171 -4 506 303 78 26 chr3 71346417 71346648 -156177930 + MIR SINE MIR 20 262 0 455 324 76 7 chr3 71347084 71347359 -156177219 + L1ME3A LINE L1 5533 5826 -344 362 290 127 41 chr3 71347818 71348039 -156176539 + MIR SINE MIR 2 241 -21 867 241 32 32 chr3 71348628 71348844 -156175734 + MER20 DNA MER1_type 4 219 0 259 125 0 36 chr3 71349666 71349722 -156174856 + (CA)n Simple_repeat Simple_repeat 2 55 0 180 0 0 0 chr3 71350039 71350059 -156174519 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1559 238 38 42 chr3 71350144 71350619 -156173959 + L1MD3 LINE L1 7523 7995 0 1007 71 47 0 chr3 71350668 71350795 -156173783 + AluSq/x SINE Alu 1 133 -179 1778 155 0 43 chr3 71352523 71352845 -156171733 - AluJo SINE Alu -4 308 1 237 367 41 20 chr3 71353054 71353152 -156171426 + L3 LINE CR1 287 386 -1191 1254 211 75 89 chr3 71353360 71353589 -156170989 - L1M4 LINE L1 -1598 4548 4317 250 189 0 0 chr3 71353589 71353626 -156170952 - Tigger3(Golem) DNA MER2_type 0 3038 3002 1254 211 75 89 chr3 71353626 71353852 -156170726 - L1M4 LINE L1 -1829 4317 4064 274 337 11 0 chr3 71354164 71354259 -156170319 - L2 LINE L2 0 3313 3218 1788 155 3 44 chr3 71354369 71354686 -156169892 + AluJb SINE Alu 1 304 -8 29 0 0 0 chr3 71354989 71355018 -156169560 + AT_rich Low_complexity Low_complexity 1 29 0 255 114 0 0 chr3 71355911 71355946 -156168632 - MER20 DNA MER1_type -1 218 184 1504 183 0 23 chr3 71357776 71358039 -156166539 - AluJb SINE Alu -37 275 19 1367 154 4 9 chr3 71359517 71359744 -156164834 - AluJo SINE Alu -81 231 6 2180 135 0 0 chr3 71359900 71360212 -156164366 - AluSx SINE Alu 0 312 1 384 261 219 0 chr3 71360315 71360434 -156164144 - MER5A DNA MER1_type -1 188 44 21 0 0 0 chr3 71360945 71360966 -156163612 + AT_rich Low_complexity Low_complexity 1 21 0 274 264 109 36 chr3 71361721 71361831 -156162747 - MIR SINE MIR -34 228 111 1842 154 0 3 chr3 71362941 71363266 -156161312 + AluJb SINE Alu 1 324 0 2211 112 7 0 chr3 71363313 71363608 -156160970 + AluSx SINE Alu 14 310 -2 1590 99 178 4 chr3 71364572 71364825 -156159753 + AluSg1 SINE Alu 1 297 -12 701 164 23 129 chr3 71364834 71364911 -156159667 - Tigger2 DNA MER2_type -1 2717 2666 743 168 30 15 chr3 71364911 71365042 -156159536 - FLAM_A SINE Alu 0 133 1 701 164 23 129 chr3 71365042 71365135 -156159443 - Tigger2 DNA MER2_type -52 2666 2565 1197 153 39 10 chr3 71365136 71365339 -156159239 - Tigger2 DNA MER2_type -2509 209 1 315 283 100 17 chr3 71365561 71365681 -156158897 + MIR SINE MIR 20 149 -113 503 241 43 31 chr3 71367131 71367293 -156157285 - MIR SINE MIR 0 262 99 1469 158 51 44 chr3 71367501 71367836 -156156742 - MER33 DNA MER1_type 0 324 1 292 323 0 21 chr3 71368610 71368703 -156155875 + MER117 DNA MER1_type 71 161 -36 183 42 0 0 chr3 71368996 71369020 -156155558 + (CAAA)n Simple_repeat Simple_repeat 1 24 0 209 255 63 33 chr3 71369069 71369170 -156155408 + MIR SINE MIR 13 115 -93 1964 116 9 56 chr3 71369290 71369609 -156154969 + AluSx SINE Alu 1 304 -8 495 296 118 0 chr3 71369612 71369781 -156154797 - MIR SINE MIR -29 233 45 2641 158 21 9 chr3 71370132 71370569 -156154009 + MSTB2 LTR MaLR 15 456 -1 281 305 19 29 chr3 71372402 71372507 -156152071 - Charlie8 DNA MER1_type -2182 235 132 421 228 26 26 chr3 71372520 71372634 -156151944 + L2 LINE L2 3200 3313 0 23 33 0 0 chr3 71372661 71372691 -156151887 + AT_rich Low_complexity Low_complexity 1 30 0 196 276 216 17 chr3 71373201 71373317 -156151261 - MIR3 SINE MIR 0 208 70 281 290 183 18 chr3 71373944 71374113 -156150465 + MIR SINE MIR 65 261 -1 206 212 222 50 chr3 71374101 71374200 -156150378 - MIR SINE MIR -100 162 47 * 830 156 0 50 chr3 71375590 71375731 -156148847 + AluJo SINE Alu 2 135 -177 851 211 97 31 chr3 71375748 71375975 -156148603 - MIR SINE MIR -15 247 6 2294 101 0 3 chr3 71376285 71376581 -156147997 - AluSc SINE Alu -14 295 1 1802 143 63 3 chr3 71377224 71377510 -156147068 - AluJo SINE Alu -9 303 1 1599 164 52 11 chr3 71377527 71377814 -156146764 - AluJo SINE Alu -11 301 3 1884 139 4 0 chr3 71378428 71378701 -156145877 + AluSx SINE Alu 24 297 -15 300 190 254 49 chr3 71379697 71379839 -156144739 + L1MC5 LINE L1 7728 7898 -63 293 80 120 7 chr3 71381662 71381812 -156142766 + (TA)n Simple_repeat Simple_repeat 1 167 0 820 233 0 17 chr3 71383093 71383273 -156141305 + AluJb SINE Alu 134 310 -2 530 300 37 47 chr3 71383538 71383838 -156140740 + HAL1b LINE L1 339 635 -713 1076 248 41 64 chr3 71383995 71384414 -156140164 + L1MC5 LINE L1 7168 7576 -385 1188 188 217 96 chr3 71384627 71385084 -156139494 - MLT2B1 LTR ERVL -6 514 3 216 0 0 0 chr3 71385130 71385154 -156139424 + (T)n Simple_repeat Simple_repeat 1 24 0 2278 82 0 0 chr3 71385690 71385993 -156138585 - AluY SINE Alu -8 303 1 620 296 23 23 chr3 71387140 71387360 -156137218 + MIR SINE MIR 41 260 -2 1570 174 64 0 chr3 71387583 71387872 -156136706 - AluJb SINE Alu 0 306 1 2287 87 3 3 chr3 71389700 71389998 -156134580 - AluSx SINE Alu -14 298 1 727 177 80 0 chr3 71390548 71390661 -156133917 + FLAM_A SINE Alu 1 122 -11 2230 111 3 0 chr3 71390666 71390963 -156133615 + AluSc SINE Alu 1 298 -11 1615 63 0 0 chr3 71391811 71392054 -156132524 - AluY SINE Alu 0 334 92 1920 54 0 0 chr3 71392054 71392277 -156132301 - AluY SINE Alu -88 223 1 820 164 65 74 chr3 71392281 71392472 -156132106 + Charlie5 DNA MER1_type 2393 2583 -41 1982 141 7 10 chr3 71392472 71392778 -156131800 + AluSx SINE Alu 4 308 -4 820 164 65 74 chr3 71392778 71392817 -156131761 + Charlie5 DNA MER1_type 2583 2621 -3 2191 109 3 7 chr3 71392927 71393229 -156131349 + AluSc SINE Alu 1 301 -8 180 297 27 27 chr3 71394326 71394400 -156130178 + MIR SINE MIR 60 133 -129 380 294 8 0 chr3 71394500 71394619 -156129959 + MIR SINE MIR 95 214 -48 1181 155 103 5 chr3 71395583 71395847 -156128731 + MER1B DNA MER1_type 1 329 0 2196 89 3 45 chr3 71395961 71396275 -156128303 - AluSp SINE Alu -12 301 1 343 300 0 46 chr3 71396470 71396600 -156127978 + MIR3 SINE MIR 82 205 -3 383 265 33 72 chr3 71397539 71397720 -156126858 + MIR SINE MIR 10 183 -79 322 341 143 5 chr3 71398873 71399096 -156125482 - MIR SINE MIR 0 262 9 2320 101 3 0 chr3 71400169 71400477 -156124101 - AluSc SINE Alu 0 309 1 337 254 42 85 chr3 71401125 71401243 -156123335 - MIR SINE MIR -73 135 23 182 294 29 39 chr3 71401711 71401813 -156122765 - MIR SINE MIR -12 250 150 277 297 80 67 chr3 71401866 71402105 -156122473 + L2 LINE L2 2720 2961 -353 261 57 0 0 chr3 71403137 71403172 -156121406 + (TCCCC)n Simple_repeat Simple_repeat 4 38 0 1460 194 45 0 chr3 71403179 71403328 -156121250 - AluJb SINE Alu -32 280 112 315 0 0 0 chr3 71403328 71403363 -156121215 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1460 194 45 0 chr3 71403363 71403481 -156121097 - AluJb SINE Alu -200 112 1 562 190 6 2 chr3 71403594 71403716 -156120862 - MLT1A1 LTR MaLR -248 126 3 1422 118 11 191 chr3 71403895 71404261 -156120317 - AluY SINE Alu -11 300 1 1587 180 43 0 chr3 71404291 71404569 -156120009 + AluJo SINE Alu 11 300 -12 524 292 27 50 chr3 71404579 71404798 -156119780 + MIR SINE MIR 49 262 0 25 31 0 0 chr3 71404812 71404844 -156119734 + AT_rich Low_complexity Low_complexity 1 32 0 1794 130 81 14 chr3 71405473 71405758 -156118820 - AluSg SINE Alu -6 304 1 21 36 0 0 chr3 71406212 71406240 -156118338 + AT_rich Low_complexity Low_complexity 1 28 0 219 125 0 0 chr3 71406357 71406397 -156118181 + (A)n Simple_repeat Simple_repeat 1 40 0 1313 232 154 43 chr3 71407369 71408165 -156116413 + L1MC4 LINE L1 6856 7563 -479 2192 97 10 3 chr3 71408165 71408473 -156116105 + AluY SINE Alu 1 310 -1 1313 232 154 43 chr3 71408473 71408553 -156116025 + L1MC4 LINE L1 7563 7633 -409 234 116 0 0 chr3 71408553 71408596 -156115982 + (CA)n Simple_repeat Simple_repeat 2 44 0 1313 232 154 43 chr3 71408596 71408690 -156115888 + L1MC4 LINE L1 7633 8039 -3 1984 152 0 10 chr3 71410164 71410467 -156114111 + AluSg SINE Alu 1 300 -10 1447 182 3 52 chr3 71410484 71410770 -156113808 + AluJb SINE Alu 6 277 -35 468 0 0 0 chr3 71410770 71410822 -156113756 + (TAGG)n Simple_repeat Simple_repeat 4 55 0 384 288 18 18 chr3 71411324 71411487 -156113091 - MER117 DNA MER1_type -34 163 1 1806 151 30 13 chr3 71411837 71412141 -156112437 + AluJo SINE Alu 3 311 -1 2115 90 50 0 chr3 71412148 71412426 -156112152 + AluSx SINE Alu 14 305 -7 1283 222 7 18 chr3 71413331 71413610 -156110968 - AluJo SINE Alu -4 308 33 353 254 0 0 chr3 71413610 71413677 -156110901 - AluJ/FLAM SINE Alu -235 67 1 352 242 42 0 chr3 71414399 71414542 -156110036 - L1ME LINE L1 -688 5476 5328 253 318 27 55 chr3 71415228 71415338 -156109240 + L2 LINE L2 3156 3262 -10 230 315 105 7 chr3 71415814 71415957 -156108621 - L1ME LINE L1 -583 5538 5382 789 182 20 14 chr3 71417048 71417196 -156107382 - L1PA16 LINE L1 -3 6163 6015 2515 69 0 0 chr3 71417207 71417510 -156107068 - AluY SINE Alu -8 303 1 201 293 0 0 chr3 71417511 71417552 -156107026 + MER91 DNA MER1_type 141 181 -15 2269 111 0 0 chr3 71418940 71419246 -156105332 + AluSg SINE Alu 1 306 -4 205 241 253 0 chr3 71419687 71419766 -156104812 + L2 LINE L2 3169 3267 -5 2109 126 7 0 chr3 71420043 71420337 -156104241 + AluSx SINE Alu 17 312 0 277 278 58 69 chr3 71420545 71420718 -156103860 - MIR SINE MIR -74 188 18 697 219 138 25 chr3 71420911 71421107 -156103471 - MER20 DNA MER1_type 0 219 2 4577 211 45 40 chr3 71421869 71424187 -156100391 - L1MD2 LINE L1 -2 6357 4020 850 138 0 0 chr3 71424246 71424362 -156100216 - FLAM_C SINE Alu -27 116 1 1169 172 0 38 chr3 71424930 71425139 -156099439 - AluJo SINE Alu -26 286 86 185 308 0 13 chr3 71425180 71425258 -156099320 + MIR SINE MIR 181 257 -5 384 292 70 38 chr3 71426448 71426633 -156097945 - MIR SINE MIR -5 257 67 2089 115 3 10 chr3 71427452 71427783 -156096795 + AluSq SINE Alu 1 313 0 222 274 14 14 chr3 71428162 71428235 -156096343 + (TA)n Simple_repeat Simple_repeat 1 73 0 38 85 0 0 chr3 71428902 71428996 -156095582 + GC_rich Low_complexity Low_complexity 1 94 0 565 97 0 65 chr3 71430241 71430253 -156094325 - L1MC1 LINE L1 0 6333 6322 2263 99 0 16 chr3 71430253 71430565 -156094013 - AluSc SINE Alu -2 307 1 565 97 0 65 chr3 71430565 71430645 -156093933 - L1MC1 LINE L1 -11 6322 6247 232 219 81 81 chr3 71430645 71430805 -156093773 + MER104 DNA Tc2 20 179 -1 414 0 0 0 chr3 71430989 71431035 -156093543 + (TTCC)n Simple_repeat Simple_repeat 2 47 0 24 32 0 0 chr3 71431096 71431127 -156093451 + AT_rich Low_complexity Low_complexity 1 31 0 1628 174 32 67 chr3 71431292 71431665 -156092913 + MER46B DNA MER2_type 1 235 -1 239 236 0 0 chr3 71432330 71432385 -156092193 + (TG)n Simple_repeat Simple_repeat 2 56 0 193 248 189 53 chr3 71432426 71432519 -156092059 + L2 LINE L2 2927 3006 -307 1687 197 0 0 chr3 71432519 71432808 -156091770 - AluJb SINE Alu -19 293 5 193 248 189 53 chr3 71432808 71432920 -156091658 + L2 LINE L2 3006 3160 -153 339 265 85 75 chr3 71433339 71433539 -156091039 + MIR SINE MIR 58 259 -3 452 351 69 0 chr3 71434336 71434538 -156090040 + MIR SINE MIR 31 246 -16 761 219 22 0 chr3 71436547 71436684 -156087894 + FRAM SINE Alu 5 144 -32 246 62 0 0 chr3 71436686 71436718 -156087860 + (GGAGA)n Simple_repeat Simple_repeat 2 33 0 2176 119 0 0 chr3 71437310 71437613 -156086965 - AluSx SINE Alu -7 305 3 24 0 0 0 chr3 71437786 71437810 -156086768 + AT_rich Low_complexity Low_complexity 1 24 0 447 247 13 73 chr3 71440108 71440258 -156084320 - MER104 DNA Tc2 -6 174 34 229 250 125 29 chr3 71440260 71440364 -156084214 + MIR SINE MIR 134 247 -15 267 308 0 22 chr3 71440427 71440518 -156084060 - L2 LINE L2 -15 3298 3210 207 259 17 0 chr3 71441590 71441648 -156082930 - MIR SINE MIR -68 194 136 202 330 0 21 chr3 71441819 71441913 -156082665 + C-rich Low_complexity Low_complexity 4 95 0 1404 55 6 0 chr3 71442128 71442309 -156082269 - L1PA4 LINE L1 -62 6093 5912 844 153 7 44 chr3 71442357 71442494 -156082084 - FLAM_C SINE Alu 0 133 2 239 286 71 0 chr3 71443183 71443253 -156081325 - L2 LINE L2 -13 3259 3185 1117 207 22 27 chr3 71443347 71443462 -156081116 - MER58A DNA MER1_type -2196 224 109 1363 219 92 12 chr3 71443462 71443800 -156080778 + MLT1A1 LTR MaLR 1 365 0 1117 207 22 27 chr3 71443800 71443906 -156080672 - MER58A DNA MER1_type -2311 109 4 321 303 116 72 chr3 71443909 71444120 -156080458 - MLT1L LTR MaLR -156 459 228 2165 122 3 0 chr3 71444120 71444416 -156080162 + AluSx SINE Alu 1 297 -15 321 303 116 72 chr3 71444416 71444524 -156080054 - MLT1L LTR MaLR -387 228 126 457 274 130 0 chr3 71444614 71444760 -156079818 + MER5A DNA MER1_type 18 182 -7 2365 134 45 0 chr3 71444849 71445223 -156079355 + MSTA LTR MaLR 1 391 -37 326 122 0 0 chr3 71445896 71445945 -156078633 + (TTCC)n Simple_repeat Simple_repeat 1 49 0 951 161 15 55 chr3 71448177 71448376 -156076202 + MER20 DNA MER1_type 1 191 -28 22 56 0 0 chr3 71449548 71449584 -156074994 + AT_rich Low_complexity Low_complexity 1 36 0 1887 85 30 41 chr3 71450081 71450352 -156074226 + AluSg SINE Alu 1 268 -42 216 0 0 0 chr3 71451039 71451063 -156073515 + (CAAAAA)n Simple_repeat Simple_repeat 3 26 0 476 269 128 36 chr3 71451832 71452051 -156072527 - MIR SINE MIR -12 250 12 218 286 95 40 chr3 71452578 71452704 -156071874 + L2 LINE L2 3179 3311 -2 * 256 316 41 0 chr3 71452675 71452773 -156071805 + MIR SINE MIR 71 172 -90 731 297 123 16 chr3 71453739 71454113 -156070465 - MLT1J LTR MaLR -45 466 53 195 371 21 10 chr3 71454152 71454249 -156070329 + L2 LINE L2 3175 3272 0 274 330 23 46 chr3 71454365 71454583 -156069995 - L3 LINE CR1 -291 1286 1074 392 286 194 20 chr3 71455124 71455175 -156069403 - MIR SINE MIR -32 230 189 1414 203 18 103 chr3 71455175 71455574 -156069004 + MLT1A1 LTR MaLR 1 365 0 392 286 194 20 chr3 71455574 71455718 -156068860 - MIR SINE MIR -73 189 1 189 107 0 0 chr3 71457526 71457554 -156067024 + (T)n Simple_repeat Simple_repeat 1 28 0 2176 109 6 16 chr3 71459238 71459551 -156065027 - AluSx SINE Alu 0 312 3 233 29 29 0 chr3 71459953 71459987 -156064591 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2140 48 0 4 chr3 71459987 71460236 -156064342 - AluY SINE Alu -32 279 32 304 281 58 14 chr3 71460317 71460456 -156064122 + MIR SINE MIR 53 197 -65 2087 98 14 7 chr3 71460646 71460943 -156063635 + AluSc SINE Alu 1 299 -10 1995 135 7 3 chr3 71461179 71461476 -156063102 + AluSx SINE Alu 1 298 -14 333 313 51 47 chr3 71461507 71461721 -156062857 + Charlie8 DNA MER1_type 192 406 -2011 375 293 74 60 chr3 71461796 71462011 -156062567 - MIR SINE MIR -6 256 39 1972 94 51 11 chr3 71462609 71462884 -156061694 + AluSx SINE Alu 1 286 -26 875 167 74 60 chr3 71463365 71463581 -156060997 - MER20 DNA MER1_type 0 219 1 259 244 17 0 chr3 71463589 71463654 -156060924 + HsTC2 DNA Tc2 21 86 -1812 2343 103 3 0 chr3 71464580 71464892 -156059686 + AluSq SINE Alu 1 313 0 278 253 73 101 chr3 71465048 71465226 -156059352 - MIR SINE MIR 0 262 90 344 275 51 46 chr3 71466828 71467099 -156057479 - MLT1K LTR MaLR 0 588 255 2307 109 0 0 chr3 71467345 71467648 -156056930 + AluSp SINE Alu 1 303 -10 503 240 8 25 chr3 71467683 71467804 -156056774 - L2 LINE L2 -2 3311 3193 247 350 94 11 chr3 71468784 71468964 -156055614 - MIR SINE MIR -21 241 47 2311 89 0 29 chr3 71469028 71469344 -156055234 - AluSc SINE Alu -2 307 1 2347 95 0 0 chr3 71471136 71471440 -156053138 + AluSc SINE Alu 1 304 -5 466 332 137 32 chr3 71471715 71472276 -156052302 + L2 LINE L2 2113 2732 -582 325 283 40 57 chr3 71472409 71472586 -156051992 + L2 LINE L2 2937 3110 -162 25 31 0 0 chr3 71474689 71474721 -156049857 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chr3 71475381 71475414 -156049164 + AT_rich Low_complexity Low_complexity 1 33 0 180 0 0 0 chr3 71475574 71475594 -156048984 + (TC)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr3 71476614 71476642 -156047936 + AT_rich Low_complexity Low_complexity 1 28 0 1831 164 0 25 chr3 71477418 71477736 -156046842 - AluSx SINE Alu -2 310 1 191 375 0 14 chr3 71477819 71477891 -156046687 + L2 LINE L2 3023 3093 -179 1584 93 187 0 chr3 71478633 71478879 -156045699 - MER1B DNA MER1_type 0 339 48 367 292 153 63 chr3 71479209 71479576 -156045002 + L2 LINE L2 2866 3265 -7 454 298 61 15 chr3 71480199 71480397 -156044181 + MIR SINE MIR 48 254 -8 646 212 49 38 chr3 71481032 71481216 -156043362 + MER5A DNA MER1_type 3 188 -1 243 347 40 13 chr3 71481643 71481793 -156042785 + MIR SINE MIR 37 190 -72 334 344 7 32 chr3 71482009 71482163 -156042415 - L2 LINE L2 -2 3311 3162 621 226 137 22 chr3 71482242 71482468 -156042110 - L1MC4a LINE L1 -1672 6136 5885 22 0 0 0 chr3 71483164 71483186 -156041392 + AT_rich Low_complexity Low_complexity 1 22 0 2278 106 0 3 chr3 71484262 71484563 -156040015 + AluSq SINE Alu 1 300 -13 1671 81 0 0 chr3 71484602 71484811 -156039767 + AluSg/x SINE Alu 94 302 -10 189 235 20 0 chr3 71484926 71484977 -156039601 - L2 LINE L2 0 3313 3262 632 278 163 22 chr3 71484983 71485210 -156039368 - MIR SINE MIR 0 262 4 267 337 0 12 chr3 71485950 71486036 -156038542 - L2 LINE L2 -6 3266 3182 22 35 0 0 chr3 71487218 71487247 -156037331 + AT_rich Low_complexity Low_complexity 1 29 0 233 271 77 44 chr3 71487744 71487925 -156036653 - L1MC4a LINE L1 -461 5660 5474 210 311 14 0 chr3 71487973 71488047 -156036531 + MIR SINE MIR 69 143 -65 1340 143 18 14 chr3 71490367 71490584 -156033994 - AluSq SINE Alu -21 292 75 594 217 0 0 chr3 71490998 71491136 -156033442 + L1MB7 LINE L1 6037 6174 -10 1227 248 81 43 chr3 71491245 71491916 -156032662 - L2 LINE L2 -62 3251 2531 1806 184 0 16 chr3 71491947 71492262 -156032316 - AluJb SINE Alu -2 310 1 2034 124 0 3 chr3 71492855 71493164 -156031414 + AluSx SINE Alu 3 310 0 1824 122 8 0 chr3 71493611 71493866 -156030712 + AluSq SINE Alu 37 293 -20 398 308 27 20 chr3 71494265 71494411 -156030167 + MIR SINE MIR 5 151 -111 502 291 23 11 chr3 71494509 71494684 -156029894 + MIR SINE MIR 70 246 -16 440 324 250 4 chr3 71495421 71495677 -156028901 + L3 LINE CR1 433 751 -826 1854 130 3 7 chr3 71495987 71496279 -156028299 - AluSx SINE Alu -21 291 1 691 203 12 18 chr3 71496315 71496478 -156028100 - MER106B DNA MER1_type 0 1059 898 1363 147 0 0 chr3 71497265 71497455 -156027123 - AluSq SINE Alu -123 190 1 305 304 139 17 chr3 71497509 71497746 -156026832 - L1MC4a LINE L1 -894 5252 4987 662 228 172 0 chr3 71497996 71498176 -156026402 - MER58A DNA MER1_type -4 220 10 345 241 72 84 chr3 71498189 71498399 -156026179 + MIR SINE MIR 43 250 -12 396 231 83 0 chr3 71498501 71498657 -156025921 + MER96B DNA MER1_type? 183 351 -66 286 238 89 0 chr3 71498758 71498859 -156025719 - L2 LINE L2 -181 3132 3023 2102 136 47 8 chr3 71500275 71500636 -156023942 - THE1C LTR MaLR 0 375 1 214 340 11 11 chr3 71500834 71500928 -156023650 - MIR SINE MIR -4 258 165 197 315 27 0 chr3 71501031 71501104 -156023474 - MIR3 SINE MIR -13 195 121 1564 218 27 45 chr3 71503959 71504408 -156020170 - L1MD3 LINE L1 -139 7856 7416 361 255 159 21 chr3 71504755 71504900 -156019678 - MIR SINE MIR -9 253 89 384 339 68 26 chr3 71505509 71505701 -156018877 - L2 LINE L2 0 3272 3073 267 273 33 93 chr3 71509245 71509395 -156015183 + MIR SINE MIR 76 216 -46 951 204 10 15 chr3 71509408 71509614 -156014964 - MER3 DNA MER1_type -4 205 1 23 0 0 0 chr3 71510202 71510225 -156014353 + AT_rich Low_complexity Low_complexity 1 23 0 2173 115 0 10 chr3 71510512 71510808 -156013770 - AluSx SINE Alu -19 293 1 1754 142 16 56 chr3 71511672 71511829 -156012749 - AluSx SINE Alu -21 291 150 2142 98 0 10 chr3 71511829 71512124 -156012454 - AluSx SINE Alu -20 292 1 1754 142 16 56 chr3 71512124 71512269 -156012309 - AluSx SINE Alu -162 150 1 2389 82 0 3 chr3 71512518 71512821 -156011757 - AluSp SINE Alu -11 302 1 505 156 47 23 chr3 71512824 71512952 -156011626 + L1MD1 LINE L1 6112 6242 0 32 0 0 0 chr3 71513605 71513637 -156010941 + AT_rich Low_complexity Low_complexity 1 32 0 2139 147 0 3 chr3 71514349 71514692 -156009886 - AluSx SINE Alu 0 342 1 205 176 27 0 chr3 71514863 71514937 -156009641 + (TG)n Simple_repeat Simple_repeat 2 77 0 681 76 0 0 chr3 71514985 71515077 -156009501 + (TTCC)n Simple_repeat Simple_repeat 3 94 0 532 129 24 0 chr3 71515077 71515162 -156009416 - AluSc SINE Alu -14 295 209 216 250 211 47 chr3 71516945 71517073 -156007505 + L2 LINE L2 3164 3312 -1 203 262 33 16 chr3 71517085 71517146 -156007432 - MIR SINE MIR -114 94 33 519 325 58 0 chr3 71517702 71517893 -156006685 - MIR SINE MIR -43 219 18 1666 166 47 36 chr3 71518148 71518351 -156006227 - MLT1A1 LTR MaLR 0 365 155 1997 138 7 3 chr3 71518351 71518649 -156005929 - AluSx SINE Alu -13 299 1 1666 166 47 36 chr3 71518649 71518806 -156005772 - MLT1A1 LTR MaLR -210 155 1 229 254 117 84 chr3 71518916 71519259 -156005319 + MER113 DNA MER1_type? 68 421 -100 1842 138 78 7 chr3 71519321 71519603 -156004975 + AluSx SINE Alu 1 302 -10 467 272 54 39 chr3 71520127 71520375 -156004203 - MIR SINE MIR -3 259 12 227 184 10 51 chr3 71520865 71520963 -156003615 + (TTATA)n Simple_repeat Simple_repeat 1 94 0 1231 171 35 16 chr3 71520989 71521247 -156003331 + MER58B DNA MER1_type 79 341 0 189 0 0 0 chr3 71521720 71521741 -156002837 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 1988 166 134 12 chr3 71523611 71524022 -156000556 + LOR1b LTR ERV1 1 461 0 2311 122 0 6 chr3 71524993 71525305 -155999273 - AluSx SINE Alu -2 310 1 702 244 14 36 chr3 71525965 71526186 -155998392 + MER20 DNA MER1_type 4 219 0 274 306 135 9 chr3 71526852 71526963 -155997615 - L2 LINE L2 -11 3261 3137 256 263 100 0 chr3 71527095 71527175 -155997403 - L2 LINE L2 -344 2969 2882 310 198 123 10 chr3 71527183 71527285 -155997293 + MLT1D LTR MaLR 3 122 -397 457 114 89 0 chr3 71527841 71527920 -155996658 - MER46C DNA MER2_type 0 338 253 1936 113 32 22 chr3 71527922 71528233 -155996345 - MER1B DNA MER1_type 0 339 26 435 289 37 21 chr3 71528243 71528430 -155996148 - MER46C DNA MER2_type -88 250 61 1752 161 4 4 chr3 71529240 71529520 -155995058 - AluJo SINE Alu -32 280 1 441 225 18 9 chr3 71529546 71529657 -155994921 - MER103 DNA DNA -46 120 9 243 0 0 0 chr3 71529673 71529700 -155994878 + (TG)n Simple_repeat Simple_repeat 2 28 0 351 192 0 14 chr3 71529888 71529982 -155994596 + FLAM SINE Alu 53 133 0 3108 145 14 6 chr3 71530173 71530670 -155993908 - MER61D LTR ERV1 0 501 1 279 277 0 0 chr3 71531457 71531522 -155993056 - MIR SINE MIR -79 183 119 1900 159 14 14 chr3 71531722 71532080 -155992498 - MER46B DNA MER2_type -3 233 1 292 229 17 42 chr3 71532265 71532383 -155992195 - Charlie5 DNA MER1_type 0 2624 2510 444 168 34 17 chr3 71532461 71532580 -155991998 - Charlie5 DNA MER1_type -148 2464 2344 511 247 62 50 chr3 71532738 71532997 -155991581 + L1MA9 LINE L1 6015 6276 -36 216 191 0 63 chr3 71533988 71534051 -155990527 + (TCTCTG)n Simple_repeat Simple_repeat 5 63 0 689 262 41 113 chr3 71534537 71534817 -155989761 - L2 LINE L2 -365 2949 2713 646 205 0 8 chr3 71534817 71534939 -155989639 - FLAM_A SINE Alu -8 125 5 689 262 41 113 chr3 71534939 71535120 -155989458 - L2 LINE L2 -601 2713 2521 186 234 143 78 chr3 71535374 71535451 -155989127 + MIR SINE MIR 147 228 -34 2138 105 3 3 chr3 71535483 71535768 -155988810 - AluSg SINE Alu -25 285 1 560 351 94 13 chr3 71535816 71536209 -155988369 + L2 LINE L2 2532 2956 -358 189 121 0 0 chr3 71536284 71536317 -155988261 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 2488 26 0 30 chr3 71536721 71537026 -155987552 - AluY SINE Alu -15 296 1 264 288 14 27 chr3 71537404 71537477 -155987101 - L2 LINE L2 -42 3271 3200 200 336 26 26 chr3 71538256 71538372 -155986206 + L3 LINE CR1 1248 1363 -214 2012 152 3 3 chr3 71538543 71538845 -155985733 + AluJb SINE Alu 1 302 -10 1122 149 46 29 chr3 71538851 71539092 -155985486 + L1MA8 LINE L1 6045 6289 -2 180 0 0 0 chr3 71540003 71540023 -155984555 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1233 163 171 8 chr3 71540031 71540277 -155984301 - AluJo SINE Alu -16 286 1 377 303 114 19 chr3 71540308 71540519 -155984059 + MIR SINE MIR 29 259 -3 216 97 0 0 chr3 71541148 71541179 -155983399 + (T)n Simple_repeat Simple_repeat 1 31 0 216 333 70 31 chr3 71541425 71541554 -155983024 + L2 LINE L2 3180 3313 0 192 262 143 12 chr3 71543055 71543139 -155981439 + MIR SINE MIR 157 251 -11 25 0 0 0 chr3 71543389 71543414 -155981164 + AT_rich Low_complexity Low_complexity 1 25 0 480 121 24 0 chr3 71543424 71543507 -155981071 - L1MA8 LINE L1 -31 6260 6176 404 271 29 43 chr3 71545755 71545895 -155978683 + MIR SINE MIR 3 140 -122 2069 129 20 0 chr3 71545907 71546209 -155978369 + AluY SINE Alu 1 308 -3 240 228 11 43 chr3 71548242 71548334 -155976244 - MLT1K LTR MaLR -322 266 178 993 315 137 36 chr3 71550561 71551655 -155972923 - L2 LINE L2 -201 3071 1877 278 286 148 30 chr3 71552430 71552633 -155971945 + L2 LINE L2 2851 3077 -195 1534 165 50 53 chr3 71552664 71552967 -155971611 - AluJo SINE Alu -10 302 1 1983 123 10 3 chr3 71553076 71553368 -155971210 - AluSx SINE Alu -18 294 1 1053 204 63 0 chr3 71553410 71553616 -155970962 + MER8 DNA MER2_type 21 239 0 407 274 35 0 chr3 71553619 71553732 -155970846 - MIR SINE MIR -74 188 72 181 264 33 55 chr3 71554266 71554357 -155970221 - L3 LINE CR1 -906 671 583 579 272 37 37 chr3 71555273 71555490 -155969088 - L2 LINE L2 -4 3309 3093 249 33 0 0 chr3 71556282 71556312 -155968266 + (CA)n Simple_repeat Simple_repeat 1 30 0 411 253 55 27 chr3 71556364 71556510 -155968068 - MIR SINE MIR -55 207 58 712 186 6 37 chr3 71556691 71556852 -155967726 - MER20 DNA MER1_type -63 156 1 1114 217 109 40 chr3 71556958 71557308 -155967270 - MLT1A2 LTR MaLR 0 374 1 336 231 109 0 chr3 71557363 71557490 -155967088 + MIR SINE MIR 45 197 -50 1900 164 7 0 chr3 71557688 71557998 -155966580 - AluJb SINE Alu 0 312 1 823 98 53 0 chr3 71558103 71558236 -155966342 - L1PA13 LINE L1 -5 6158 6019 2069 154 0 0 chr3 71558245 71558537 -155966041 - AluSx SINE Alu -20 292 1 225 83 0 0 chr3 71558547 71558583 -155965995 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 1951 125 39 4 chr3 71559764 71560044 -155964534 - AluSc SINE Alu -19 290 1 500 226 54 21 chr3 71560267 71560436 -155964142 + MIR SINE MIR 33 201 -61 409 287 0 23 chr3 71561031 71561160 -155963418 + (ATGGTG)n Simple_repeat Simple_repeat 1 126 0 280 327 115 29 chr3 71561180 71561388 -155963190 - MIR SINE MIR -28 234 9 195 42 0 0 chr3 71562996 71563020 -155961558 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 511 290 72 36 chr3 71563470 71563559 -155961019 + MIR SINE MIR 59 143 -119 2393 99 0 0 chr3 71563559 71563861 -155960717 + AluSx SINE Alu 1 302 -10 511 290 72 36 chr3 71563861 71563964 -155960614 + MIR SINE MIR 143 258 -4 22 0 0 0 chr3 71563967 71563989 -155960589 + AT_rich Low_complexity Low_complexity 1 22 0 358 290 32 0 chr3 71565755 71565879 -155958699 - MER117 DNA MER1_type -40 157 30 343 276 98 44 chr3 71566171 71566374 -155958204 - MIR SINE MIR 0 262 49 234 0 0 0 chr3 71566549 71566575 -155958003 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2094 119 0 7 chr3 71566578 71566864 -155957714 - AluSx SINE Alu -28 284 1 183 42 0 0 chr3 71568408 71568432 -155956146 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2056 154 14 6 chr3 71569482 71569827 -155954751 + MER7A DNA MER2_type 1 346 0 449 281 146 25 chr3 71569936 71570217 -155954361 - MLT1K LTR MaLR -17 571 257 199 200 0 0 chr3 71570469 71570509 -155954069 - L2 LINE L2 -3 3310 3271 261 269 39 29 chr3 71570616 71570720 -155953858 + MER5B DNA MER1_type 74 178 0 199 315 54 54 chr3 71570799 71570948 -155953630 - MER5A DNA MER1_type -6 183 35 * 223 333 54 18 chr3 71570848 71570959 -155953619 + MER5A DNA MER1_type 63 177 -12 596 278 121 8 chr3 71571048 71571296 -155953282 + Charlie7 DNA MER1_type 125 400 -2212 231 254 30 101 chr3 71571305 71571474 -155953104 + Charlie7 DNA MER1_type 507 663 -1949 270 231 41 16 chr3 71571505 71571626 -155952952 + Charlie7 DNA MER1_type 2414 2537 -75 1729 171 13 13 chr3 71571715 71572020 -155952558 + AluJo SINE Alu 1 305 -7 2274 103 0 0 chr3 71572569 71572869 -155951709 - AluSx SINE Alu -12 300 1 558 273 18 0 chr3 71573208 71573373 -155951205 - L1ME3 LINE L1 -7 6155 5988 233 309 0 37 chr3 71574272 71574353 -155950225 - L2 LINE L2 -215 3057 2980 528 294 73 37 chr3 71574679 71574831 -155949747 - MIR SINE MIR -3 259 93 1972 177 57 37 chr3 71574831 71575289 -155949289 - MLT1C LTR MaLR 0 467 1 528 294 73 37 chr3 71575289 71575381 -155949197 - MIR SINE MIR -169 93 6 1313 98 128 0 chr3 71575621 71575825 -155948753 - MER30 DNA MER1_type 0 230 1 778 188 91 58 chr3 71575843 71576051 -155948527 - MER20 DNA MER1_type -4 215 1 219 220 99 44 chr3 71576583 71576674 -155947904 - L3b LINE CR1 -192 1391 1296 637 208 33 0 chr3 71577648 71577768 -155946810 - FLAM_C SINE Alu -8 125 2 419 329 118 0 chr3 71578354 71578506 -155946072 + MIR SINE MIR 20 189 -73 1842 145 20 20 chr3 71578858 71578969 -155945609 + AluJb SINE Alu 1 111 -201 2760 91 11 11 chr3 71578969 71579344 -155945234 + THE1C LTR MaLR 1 375 0 1842 145 20 20 chr3 71579344 71579535 -155945043 + AluJb SINE Alu 110 303 -9 393 210 54 75 chr3 71579690 71579876 -155944702 + L1ME3A LINE L1 5965 6146 -24 327 216 56 36 chr3 71580209 71580349 -155944229 - L1MC4a LINE L1 -302 5819 5704 2246 115 0 3 chr3 71580919 71581232 -155943346 - AluSx SINE Alu 0 312 1 2371 70 3 0 chr3 71581320 71581607 -155942971 + AluSp SINE Alu 1 288 -25 1477 192 65 11 chr3 71581980 71582256 -155942322 - AluJb SINE Alu -21 291 1 253 363 18 17 chr3 71582363 71582488 -155942090 - MIR SINE MIR -58 150 38 771 183 0 0 chr3 71582974 71583105 -155941473 - FLAM_C SINE Alu -12 131 1 351 148 0 0 chr3 71583728 71583782 -155940796 - AluJ/FLAM SINE Alu -211 91 38 1928 145 3 10 chr3 71584024 71584334 -155940244 - AluSg SINE Alu -2 308 1 300 328 16 57 chr3 71584376 71584498 -155940080 + L1ME LINE L1 5465 5581 -540 22 0 0 0 chr3 71584885 71584907 -155939671 + AT_rich Low_complexity Low_complexity 1 22 0 243 245 0 0 chr3 71584954 71585007 -155939571 - L2 LINE L2 0 3272 3220 2243 109 0 7 chr3 71586060 71586364 -155938214 + AluSc SINE Alu 1 302 -7 275 140 20 0 chr3 71586507 71586557 -155938021 - MER20 DNA MER1_type 0 219 169 336 179 51 0 chr3 71586617 71586684 -155937894 - MER20 DNA MER1_type -50 169 99 2794 115 2 16 chr3 71586684 71587119 -155937459 - MER1A DNA MER1_type 0 529 101 422 178 69 0 chr3 71587137 71587238 -155937340 - MER20 DNA MER1_type -111 108 1 449 304 124 5 chr3 71587323 71587524 -155937054 + MIR SINE MIR 7 231 -31 1292 173 39 9 chr3 71587775 71587949 -155936629 - AluJo SINE Alu -11 301 117 186 71 0 0 chr3 71587949 71587977 -155936601 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1292 173 39 9 chr3 71587977 71588033 -155936545 - AluJo SINE Alu -195 117 64 231 284 60 0 chr3 71588527 71588594 -155935984 - MIR SINE MIR -82 180 110 919 182 145 19 chr3 71588894 71588940 -155935638 - MLT2C2 LTR ERVL 0 397 358 432 0 0 0 chr3 71588940 71588988 -155935590 + (TC)n Simple_repeat Simple_repeat 1 48 0 261 119 0 0 chr3 71588987 71589029 -155935549 + (CA)n Simple_repeat Simple_repeat 1 42 0 * 919 182 145 19 chr3 71588988 71589283 -155935295 - MLT2C2 LTR ERVL -39 358 80 210 304 89 9 chr3 71589764 71589876 -155934702 - L2 LINE L2 -1 3312 3192 428 33 0 0 chr3 71590190 71590250 -155934328 + L1PA2 LINE L1 6095 6154 -1 304 318 137 86 chr3 71590990 71591223 -155933355 + MIR SINE MIR 8 252 -10 312 27 0 0 chr3 71591912 71591949 -155932629 + (TG)n Simple_repeat Simple_repeat 2 38 0 2355 224 150 53 chr3 71592185 71592787 -155931791 + L1MC4 LINE L1 6811 7353 -689 2095 101 20 27 chr3 71592787 71593083 -155931495 - AluSx SINE Alu -18 294 1 2355 224 150 53 chr3 71593083 71593483 -155931095 + L1MC4 LINE L1 7353 7926 -116 288 0 0 0 chr3 71593483 71593515 -155931063 + (TG)n Simple_repeat Simple_repeat 2 33 0 2355 224 150 53 chr3 71593515 71593582 -155930996 + L1MC4 LINE L1 7926 7985 -57 1612 157 57 13 chr3 71593646 71593945 -155930633 - AluJo SINE Alu 0 312 1 1600 202 0 36 chr3 71595296 71595598 -155928980 + AluJo SINE Alu 1 291 -21 189 347 10 31 chr3 71595629 71595727 -155928851 - MIR SINE MIR -13 249 154 282 29 0 0 chr3 71595793 71595828 -155928750 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2298 98 3 0 chr3 71595886 71596183 -155928395 - AluSp SINE Alu -15 298 1 1606 189 0 42 chr3 71596286 71596598 -155927980 + AluJb SINE Alu 1 299 -13 271 231 108 72 chr3 71596952 71597024 -155927554 + L1MC5 LINE L1 7716 7784 -177 2117 119 20 0 chr3 71597024 71597319 -155927259 + AluSx SINE Alu 1 301 -11 271 231 108 72 chr3 71597319 71597441 -155927137 + L1MC5 LINE L1 7784 7917 -44 510 271 28 55 chr3 71598658 71598913 -155925665 - MER112 DNA MER1_type -6 254 7 373 332 73 10 chr3 71598994 71599199 -155925379 + MIR SINE MIR 1 218 -44 2260 93 0 32 chr3 71599365 71599678 -155924900 - AluSp SINE Alu -10 303 1 2425 43 0 0 chr3 71600278 71600599 -155923979 + AluY SINE Alu 1 321 0 1697 154 0 7 chr3 71600674 71600947 -155923631 - AluJo SINE Alu -41 271 1 368 300 69 0 chr3 71602128 71602258 -155922320 + MER91B DNA MER1_type 39 177 -13 24 32 0 0 chr3 71602313 71602344 -155922234 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 71602424 71602445 -155922133 + AT_rich Low_complexity Low_complexity 1 21 0 253 57 0 0 chr3 71602525 71602560 -155922018 + MADE1 DNA Mariner 4 38 -42 1038 84 21 0 chr3 71602560 71602702 -155921876 - BC200 scRNA scRNA -54 146 2 388 39 0 0 chr3 71602702 71602754 -155921824 + MADE1 DNA Mariner 29 80 0 186 260 0 20 chr3 71603383 71603433 -155921145 - L3 LINE CR1 -388 1189 1141 238 320 56 67 chr3 71606400 71606578 -155918000 - MIR3 SINE MIR -3 205 30 576 280 67 46 chr3 71606764 71607003 -155917575 - MIR SINE MIR 0 262 19 614 226 74 11 chr3 71607415 71607605 -155916973 + MER20 DNA MER1_type 16 217 -2 203 289 0 0 chr3 71610023 71610075 -155914503 - MIR SINE MIR -48 214 163 356 313 134 34 chr3 71610149 71610328 -155914250 + MIR SINE MIR 34 230 -32 603 0 0 0 chr3 71611366 71611433 -155913145 + (CA)n Simple_repeat Simple_repeat 2 68 0 2189 123 0 0 chr3 71611460 71611768 -155912810 + AluSx SINE Alu 1 308 -4 875 266 37 20 chr3 71611855 71612099 -155912479 + MIR SINE MIR 15 262 0 766 231 12 12 chr3 71612302 71612471 -155912107 - MER5B DNA MER1_type -6 172 4 430 278 81 53 chr3 71613318 71613527 -155911051 - MIR SINE MIR -46 216 2 387 297 57 106 chr3 71614814 71615238 -155909340 - L2 LINE L2 -4 3268 2866 200 271 0 0 chr3 71617535 71617605 -155906973 + A-rich Low_complexity Low_complexity 3 72 0 986 177 11 0 chr3 71617611 71617797 -155906781 - MER2 DNA MER2_type -157 188 1 291 181 128 17 chr3 71617872 71617971 -155906607 - MIR SINE MIR -71 137 21 242 259 26 35 chr3 71618733 71618849 -155905729 + L1ME LINE L1 5714 5828 -293 260 275 111 82 chr3 71618986 71619096 -155905482 - MIR SINE MIR 0 262 157 2166 86 0 0 chr3 71619096 71619365 -155905213 - AluSg SINE Alu -7 303 35 260 275 111 82 chr3 71619365 71619461 -155905117 - MIR SINE MIR -105 157 50 228 67 0 0 chr3 71620142 71620172 -155904406 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 427 214 170 22 chr3 71620322 71620504 -155904074 + L1MC5 LINE L1 7698 7906 -55 365 306 36 22 chr3 71621061 71621283 -155903295 - L1ME LINE L1 -477 5644 5420 249 336 93 9 chr3 71621411 71621518 -155903060 + L2 LINE L2 3174 3289 -24 2212 98 16 3 chr3 71621569 71621874 -155902704 - AluSg SINE Alu -1 309 1 213 309 226 12 chr3 71625161 71625245 -155899333 - L2 LINE L2 -2 3270 3169 1180 160 10 10 chr3 71625807 71626007 -155898571 - AluJb SINE Alu -13 299 100 269 196 18 0 chr3 71627057 71627113 -155897465 - L2 LINE L2 0 3313 3257 228 265 9 153 chr3 71627248 71627352 -155897226 + LTR41 LTR ERVL 1 60 -713 6717 67 9 8 chr3 71627352 71628873 -155895705 - L1PA7 LINE L1 0 6154 4629 228 265 9 153 chr3 71628873 71628983 -155895595 + LTR41 LTR ERVL 60 184 -589 207 0 0 0 chr3 71629393 71629416 -155895162 + (T)n Simple_repeat Simple_repeat 1 23 0 397 171 21 50 chr3 71629422 71629564 -155895014 + LTR50 LTR ERVL 640 791 -4 243 219 0 41 chr3 71630680 71630753 -155893825 - MER103 DNA DNA -47 119 50 1727 173 7 3 chr3 71630755 71631044 -155893534 - AluJo SINE Alu -14 298 9 2246 110 3 13 chr3 71631397 71631707 -155892871 - AluSx SINE Alu -5 307 1 444 306 36 21 chr3 71631712 71631905 -155892673 + MIR SINE MIR 67 262 0 27 49 0 0 chr3 71632705 71632746 -155891832 + AT_rich Low_complexity Low_complexity 1 41 0 321 296 61 102 chr3 71633097 71633320 -155891258 - L1MC4a LINE L1 -1958 5850 5640 2191 127 3 0 chr3 71633320 71633628 -155890950 + AluSx SINE Alu 1 309 -3 321 296 61 102 chr3 71633628 71633698 -155890880 - L1MC4a LINE L1 -2168 5640 5569 1668 191 17 3 chr3 71633948 71634241 -155890337 - AluJo SINE Alu -15 297 1 419 117 0 0 chr3 71634939 71634999 -155889579 - Alu SINE Alu -12 300 241 953 144 0 0 chr3 71634999 71635138 -155889440 - AluJb SINE Alu -173 139 1 321 250 56 46 chr3 71635383 71635491 -155889087 - MIR SINE MIR -134 128 20 644 212 153 15 chr3 71635745 71636068 -155888510 + L1ME3 LINE L1 5764 6161 -1 23 0 0 0 chr3 71636248 71636271 -155888307 + AT_rich Low_complexity Low_complexity 1 23 0 263 220 0 0 chr3 71637135 71637194 -155887384 + L2 LINE L2 3214 3272 0 490 281 8 103 chr3 71637282 71637461 -155887117 - MIR SINE MIR -19 243 91 954 236 4 35 chr3 71637461 71637690 -155886888 - MER58A DNA MER1_type -2 222 1 490 281 8 103 chr3 71637690 71637752 -155886826 - MIR SINE MIR -171 91 25 350 146 0 0 chr3 71637755 71637810 -155886768 - U2 snRNA snRNA -131 57 3 365 277 0 65 chr3 71638038 71638193 -155886385 + MER112 DNA MER1_type 110 254 -6 186 175 0 25 chr3 71638700 71638740 -155885838 - MIR SINE MIR -89 119 81 335 360 18 12 chr3 71638888 71639052 -155885526 - L2 LINE L2 -12 3260 3096 25 0 0 0 chr3 71639585 71639610 -155884968 + AT_rich Low_complexity Low_complexity 1 25 0 212 327 40 13 chr3 71640114 71640264 -155884314 + MIR SINE MIR 20 173 -89 443 250 62 21 chr3 71641064 71641208 -155883370 + L1ME3 LINE L1 5997 6146 -16 881 258 91 62 chr3 71641290 71641495 -155883083 + L1ME3A LINE L1 5463 5661 -509 1606 153 38 14 chr3 71641495 71641782 -155882796 + AluJb SINE Alu 1 294 -18 1812 137 34 31 chr3 71641789 71642082 -155882496 + AluSx SINE Alu 1 294 -18 881 258 91 62 chr3 71642082 71642252 -155882326 + L1ME3A LINE L1 5666 5857 -313 1738 144 68 0 chr3 71642576 71642868 -155881710 + AluJb SINE Alu 1 312 0 1038 233 9 9 chr3 71643029 71643244 -155881334 - MER58A DNA MER1_type -9 215 1 639 231 151 103 chr3 71643714 71644025 -155880553 - MER102b DNA MER1_type -1 340 15 393 208 0 0 chr3 71644482 71644559 -155880019 + MER58 DNA MER1_type 1 77 -138 195 240 135 31 chr3 71644835 71644931 -155879647 - MIR SINE MIR -129 133 28 997 197 28 23 chr3 71645069 71645287 -155879291 + MER20 DNA MER1_type 1 219 0 423 253 51 13 chr3 71645287 71645445 -155879133 - MER113 DNA MER1_type? -357 164 1 4248 126 28 25 chr3 71646299 71646500 -155878078 + L1MB2 LINE L1 5443 5642 -529 2281 161 30 21 chr3 71646500 71646930 -155877648 + Tigger2a DNA MER2_type 1 434 0 4248 126 28 25 chr3 71646930 71647448 -155877130 + L1MB2 LINE L1 5642 6164 -7 198 118 0 0 chr3 71647872 71647906 -155876672 + (T)n Simple_repeat Simple_repeat 1 34 0 509 277 56 10 chr3 71648595 71648790 -155875788 - Charlie8 DNA MER1_type -2153 264 61 235 240 0 0 chr3 71649146 71649196 -155875382 - L2 LINE L2 -12 3260 3211 636 233 34 62 chr3 71649206 71649382 -155875196 + MER45A DNA AcHobo 1 171 -7 314 319 71 6 chr3 71649401 71649570 -155875008 - MIR SINE MIR -56 206 27 724 110 0 28 chr3 71649838 71649947 -155874631 + FLAM_C SINE Alu 2 107 -36 272 278 65 9 chr3 71650051 71650159 -155874419 + MIR SINE MIR 106 219 -43 1130 224 14 5 chr3 71650194 71650413 -155874165 + MER58A DNA MER1_type 1 221 -3 575 296 70 0 chr3 71651361 71651547 -155873031 + MIR SINE MIR 49 247 -15 309 68 0 0 chr3 71651738 71651782 -155872796 + (ATG)n Simple_repeat Simple_repeat 2 45 0 242 305 108 23 chr3 71651913 71652104 -155872474 - MIR SINE MIR -48 214 12 21 0 0 0 chr3 71652834 71652855 -155871723 + AT_rich Low_complexity Low_complexity 1 21 0 1152 215 23 0 chr3 71652876 71653095 -155871483 - MER58A DNA MER1_type 0 224 1 639 247 24 0 chr3 71653668 71653834 -155870744 + MER104 DNA Tc2 4 173 -7 250 333 83 8 chr3 71653901 71654033 -155870545 - L2 LINE L2 -1 3312 3171 2118 111 34 7 chr3 71654080 71654377 -155870201 + AluSg SINE Alu 1 305 -5 456 274 61 18 chr3 71654394 71654676 -155869902 - L2 LINE L2 -274 3039 2697 1904 116 11 18 chr3 71654684 71654968 -155869610 + AluSx SINE Alu 1 282 -30 225 0 0 0 chr3 71654972 71654997 -155869581 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 1913 134 23 10 chr3 71655476 71655775 -155868803 - AluSx SINE Alu -9 303 1 356 291 169 5 chr3 71656100 71656289 -155868289 + L2 LINE L2 2833 3052 -261 337 184 126 11 chr3 71656413 71656500 -155868078 - L2 LINE L2 -341 2972 2876 452 219 247 14 chr3 71656576 71656722 -155867856 + MER5A DNA MER1_type 2 181 -8 24 0 0 0 chr3 71657736 71657760 -155866818 + AT_rich Low_complexity Low_complexity 1 24 0 546 256 60 25 chr3 71658048 71658247 -155866331 - MIR SINE MIR -24 238 33 1198 186 89 58 chr3 71658293 71658584 -155865994 + AluJo SINE Alu 2 301 -1 407 253 11 0 chr3 71659077 71659164 -155865414 + MER58 DNA MER1_type 2 89 -2331 * 912 209 73 8 chr3 71659161 71659395 -155865183 + MER58 DNA MER1_type 2163 2411 -9 599 250 36 12 chr3 71659481 71659649 -155864929 - MIR SINE MIR -24 238 67 440 193 0 70 chr3 71660575 71660689 -155863889 - MIR SINE MIR -32 230 125 273 252 217 0 chr3 71660700 71660815 -155863763 - MIR SINE MIR -114 148 9 476 354 86 12 chr3 71660863 71661106 -155863472 - MIR SINE MIR 0 262 2 223 336 128 40 chr3 71661200 71661426 -155863152 + L3 LINE CR1 1117 1362 -215 297 189 40 117 chr3 71662709 71662886 -155861692 - HAL1b LINE L1 -3 6118 1194 1820 171 3 7 chr3 71662953 71663245 -155861333 - AluJb SINE Alu -21 291 1 1387 176 71 25 chr3 71663661 71663984 -155860594 - MER58B DNA MER1_type -1 340 3 501 242 37 42 chr3 71664110 71664300 -155860278 + L2 LINE L2 3120 3308 -5 205 377 9 0 chr3 71664320 71664434 -155860144 + L2 LINE L2 2767 2881 -433 1952 164 3 3 chr3 71664470 71664782 -155859796 + AluJb SINE Alu 1 312 0 212 155 28 127 chr3 71665453 71665524 -155859054 + MIR SINE MIR 123 186 -76 259 311 17 84 chr3 71665656 71665775 -155858803 + Charlie8 DNA MER1_type 170 280 -2137 202 180 20 20 chr3 71667484 71667534 -155857044 + CT-rich Low_complexity Low_complexity 2 51 0 2230 115 7 7 chr3 71667748 71668053 -155856525 - AluSx SINE Alu -7 305 1 2280 69 11 4 chr3 71668382 71668678 -155855900 + AluSc SINE Alu 1 298 0 281 314 33 8 chr3 71668693 71668814 -155855764 - L2 LINE L2 -15 3257 3134 1448 228 89 16 chr3 71668864 71669062 -155855516 + Charlie4a DNA MER1_type 25 207 -1754 1947 169 102 22 chr3 71669062 71669464 -155855114 + Tigger2a DNA MER2_type 1 434 0 1448 228 89 16 chr3 71669464 71669713 -155854865 + Charlie4a DNA MER1_type 207 505 -3 238 296 123 56 chr3 71669840 71670019 -155854559 - L2 LINE L2 -248 3024 2834 876 170 0 0 chr3 71673033 71673309 -155851269 + (TCCA)n Simple_repeat Simple_repeat 1 276 0 2130 90 3 72 chr3 71673801 71674133 -155850445 - AluSc SINE Alu 0 309 1 455 167 0 11 chr3 71674162 71674252 -155850326 + MER5B DNA MER1_type 1 89 -89 186 233 0 50 chr3 71674300 71674360 -155850218 + MER5B DNA MER1_type 122 178 0 244 341 15 54 chr3 71674372 71674633 -155849945 - L2 LINE L2 -639 2675 2425 2286 101 10 0 chr3 71674668 71674966 -155849612 + AluSx SINE Alu 1 301 -11 2134 74 20 34 chr3 71675154 71675450 -155849128 - AluY SINE Alu -19 292 1 601 239 92 60 chr3 71675515 71675733 -155848845 - MIR SINE MIR -31 231 7 182 250 54 0 chr3 71677137 71677193 -155847385 + L2 LINE L2 3190 3248 -65 1256 238 108 11 chr3 71677221 71677498 -155847080 - MLT1E LTR MaLR -7 586 283 628 200 0 16 chr3 71677500 71677625 -155846953 - AluJ SINE Alu -69 243 121 24 32 0 0 chr3 71677933 71677964 -155846614 + AT_rich Low_complexity Low_complexity 1 31 0 849 118 59 15 chr3 71678920 71679055 -155845523 - AluJ SINE Alu -171 141 1 523 279 0 22 chr3 71679061 71679207 -155845371 - MLT1E LTR MaLR -415 140 1 23 0 0 0 chr3 71679878 71679901 -155844677 + AT_rich Low_complexity Low_complexity 1 23 0 263 188 156 0 chr3 71682803 71682867 -155841711 - MIR SINE MIR -72 190 117 1905 153 68 44 chr3 71683564 71683949 -155840629 - MSTD LTR MaLR 0 396 3 351 254 36 22 chr3 71684558 71684696 -155839882 - MLT1H LTR MaLR -391 158 19 926 167 32 77 chr3 71685305 71685526 -155839052 - MER20 DNA MER1_type -8 211 1 716 212 63 45 chr3 71685865 71686087 -155838491 - L1MC5 LINE L1 -30 7931 7706 2192 127 7 0 chr3 71687900 71688191 -155836387 + AluSx SINE Alu 1 293 -19 531 168 152 24 chr3 71688233 71688358 -155836220 - MLT1A1 LTR MaLR -224 141 1 508 321 109 28 chr3 71688608 71689004 -155835574 + L2 LINE L2 2886 3313 0 2143 136 10 3 chr3 71689188 71689498 -155835080 + AluJb SINE Alu 1 312 0 502 299 68 51 chr3 71689829 71690240 -155834338 - LTR16B LTR ERVL -12 452 35 428 60 0 0 chr3 71690685 71690735 -155833843 + HSMAR1 DNA Mariner 672 721 -566 2396 93 76 15 chr3 71690762 71691105 -155833473 + THE1B LTR MaLR 1 364 0 6959 118 27 4 chr3 71691595 71692588 -155831990 - HSMAR1 DNA Mariner -270 1017 2 2065 145 16 0 chr3 71692637 71692941 -155831637 + AluSq SINE Alu 1 309 -4 226 121 0 0 chr3 71692965 71692998 -155831580 + U2 snRNA snRNA 2 34 -154 2022 116 22 0 chr3 71693383 71693659 -155830919 + AluSx SINE Alu 1 282 -30 827 232 167 35 chr3 71694389 71694765 -155829813 + L1ME3 LINE L1 5555 5990 -172 2243 107 3 16 chr3 71694765 71695073 -155829505 + AluSx SINE Alu 1 304 -8 827 232 167 35 chr3 71695073 71695168 -155829410 + L1ME3 LINE L1 5990 6071 -91 354 286 51 0 chr3 71695907 71696005 -155828573 - MIR SINE MIR -138 124 22 189 301 32 65 chr3 71696171 71696264 -155828314 + MIR3 SINE MIR 87 176 -32 374 199 15 29 chr3 71697428 71697541 -155827037 + MIR SINE MIR 68 175 -63 473 219 5 56 chr3 71697551 71697739 -155826839 + MIR SINE MIR 8 252 -10 212 241 19 0 chr3 71697743 71697797 -155826781 + MIR SINE MIR 198 252 -10 211 250 0 0 chr3 71698289 71698341 -155826237 + L2 LINE L2 2921 2972 -341 339 286 16 32 chr3 71698398 71698524 -155826054 + MIR SINE MIR 10 133 -75 493 254 0 16 chr3 71698830 71698956 -155825622 + MER103 DNA DNA 1 124 -42 1726 158 10 24 chr3 71699533 71699830 -155824748 + AluJo SINE Alu 6 298 -14 216 0 0 0 chr3 71701350 71701374 -155823204 + (T)n Simple_repeat Simple_repeat 1 24 0 478 269 94 61 chr3 71701446 71701658 -155822920 + MIR SINE MIR 1 219 -43 213 65 0 0 chr3 71701706 71701737 -155822841 + (TTG)n Simple_repeat Simple_repeat 1 31 0 258 152 43 0 chr3 71701867 71701913 -155822665 - Charlie5 DNA MER1_type -2545 67 20 444 268 14 113 chr3 71703235 71703322 -155821256 + MIR SINE MIR 5 99 -163 2046 111 194 8 chr3 71703322 71703683 -155820895 - MSTA LTR MaLR 0 428 1 444 268 14 113 chr3 71703683 71703879 -155820699 + MIR SINE MIR 99 260 -2 758 280 0 24 chr3 71704140 71704351 -155820227 - MIR SINE MIR -13 249 44 243 321 0 25 chr3 71704417 71704498 -155820080 - L2 LINE L2 -555 2759 2681 671 297 62 24 chr3 71705422 71705712 -155818866 - L3b LINE CR1 -163 1420 1120 312 27 0 0 chr3 71706230 71706267 -155818311 + (T)n Simple_repeat Simple_repeat 1 37 0 2261 114 3 16 chr3 71706353 71706669 -155817909 - AluSx SINE Alu 0 312 1 1710 179 24 0 chr3 71706719 71707016 -155817562 - AluJo SINE Alu -8 304 1 409 298 187 10 chr3 71707138 71707336 -155817242 - MIR SINE MIR -1 261 29 610 266 26 57 chr3 71707408 71707637 -155816941 - MIR SINE MIR -8 254 33 3539 148 130 45 chr3 71708548 71709309 -155815269 - LTR1B LTR ERV1 0 826 1 1643 240 91 20 chr3 71710813 71711351 -155813227 - L1ME3A LINE L1 -2 6168 5593 436 309 6 6 chr3 71711812 71711993 -155812585 + L1MC4 LINE L1 7692 7872 -170 477 247 0 82 chr3 71712023 71712205 -155812373 + (TG)n Simple_repeat Simple_repeat 2 168 0 2665 54 0 10 chr3 71713367 71713681 -155810897 - AluY SINE Alu 0 311 1 210 271 82 0 chr3 71714574 71714659 -155809919 - MIR SINE MIR -78 184 93 255 133 0 22 chr3 71715011 71715056 -155809522 - MER58 DNA MER1_type -1 2419 2376 355 258 5 48 chr3 71715169 71715355 -155809223 + (GGGTG)n Simple_repeat Simple_repeat 1 178 0 266 145 32 32 chr3 71715602 71715664 -155808914 - MER58A DNA MER1_type -9 98 37 288 249 147 52 chr3 71715754 71715928 -155808650 - MIR SINE MIR -60 148 4 1976 126 46 0 chr3 71715974 71716259 -155808319 + AluSg SINE Alu 1 298 -12 3600 196 30 46 chr3 71716932 71717730 -155806848 - L1MB7 LINE L1 0 6184 5400 422 182 0 0 chr3 71718152 71718229 -155806349 - MER58 DNA MER1_type 0 2420 2344 1410 169 83 46 chr3 71718232 71718557 -155806021 + MER2 DNA MER2_type 9 345 0 266 279 47 35 chr3 71718557 71718643 -155805935 - MER58 DNA MER1_type -2160 260 174 268 264 0 0 chr3 71718644 71718697 -155805881 - MER58 DNA MER1_type -2365 55 3 751 188 0 0 chr3 71720560 71720693 -155803885 + FLAM_A SINE Alu 1 133 0 399 208 128 0 chr3 71720796 71720921 -155803657 - L2 LINE L2 -5 3308 3168 197 328 99 55 chr3 71721112 71721514 -155803064 - L2 LINE L2 -436 2878 2459 * 331 334 0 0 chr3 71721505 71721639 -155802939 - MIR SINE MIR -67 141 34 315 271 0 0 chr3 71721970 71722055 -155802523 + L2 LINE L2 3188 3272 0 282 331 78 7 chr3 71722065 71722207 -155802371 + MIR SINE MIR 1 152 -110 1668 136 7 81 chr3 71722207 71722516 -155802062 + AluJb SINE Alu 1 286 -26 297 164 9 109 chr3 71722935 71723045 -155801533 + MER5A DNA MER1_type 47 145 -44 424 309 25 34 chr3 71723084 71723288 -155801290 + MIR SINE MIR 28 229 -33 24 0 0 0 chr3 71723316 71723340 -155801238 + AT_rich Low_complexity Low_complexity 1 24 0 1352 246 64 5 chr3 71724530 71724921 -155799657 - Charlie4a DNA MER1_type -14 494 81 533 264 116 25 chr3 71725349 71725585 -155798993 - MER102b DNA MER1_type -1091 337 71 240 35 0 0 chr3 71725585 71725614 -155798964 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 533 264 116 25 chr3 71725614 71725653 -155798925 - MER102b DNA MER1_type -1357 71 37 2607 149 33 4 chr3 71725827 71726277 -155798301 + L1MB3 LINE L1 5706 6168 -15 2103 137 3 3 chr3 71726277 71726583 -155797995 - AluSc SINE Alu -3 306 1 323 271 135 19 chr3 71726776 71726983 -155797595 + L1MEc LINE L1 1896 2126 -4270 762 221 47 59 chr3 71726988 71727241 -155797337 + L1ME3 LINE L1 5910 6159 -3 847 208 55 0 chr3 71727290 71727473 -155797105 + MER58 DNA MER1_type 1 193 -2227 448 263 108 3 chr3 71728023 71728205 -155796373 - MIR SINE MIR 0 262 55 405 250 105 26 chr3 71728277 71728429 -155796149 + MIR SINE MIR 2 165 -97 259 333 0 0 chr3 71729541 71729634 -155794944 + GA-rich Low_complexity Low_complexity 2 94 0 203 310 14 0 chr3 71730473 71730544 -155794034 + (CTAG)n Simple_repeat Simple_repeat 3 74 0 781 233 31 0 chr3 71731153 71731346 -155793232 - MIR SINE MIR 0 262 64 532 269 55 6 chr3 71731484 71731666 -155792912 - MIR SINE MIR -23 239 49 217 313 108 15 chr3 71731711 71731906 -155792672 - L2 LINE L2 -222 3050 2838 2139 118 20 0 chr3 71732735 71733031 -155791547 + AluSx SINE Alu 2 303 -9 1271 245 97 34 chr3 71736542 71737315 -155787263 - L2 LINE L2 -1 3312 2490 333 316 29 6 chr3 71737588 71737786 -155786792 - MLT1K LTR MaLR -169 419 187 2194 97 3 42 chr3 71837951 71838093 -155686485 + AluSg SINE Alu 1 147 -163 2507 74 0 0 chr3 71838093 71838391 -155686187 + AluY SINE Alu 1 298 -13 2194 97 3 42 chr3 71838391 71838559 -155686019 + AluSg SINE Alu 147 299 -11 2016 132 35 0 chr3 71838687 71838975 -155685603 + AluSg SINE Alu 2 299 -11 2041 142 10 0 chr3 71840111 71840414 -155684164 + AluJb SINE Alu 1 306 -6 1367 163 106 12 chr3 71841001 71841246 -155683332 + AluJb SINE Alu 1 268 -44 764 177 0 0 chr3 71841292 71841416 -155683162 + FLAM_C SINE Alu 1 124 -9 37 23 0 0 chr3 71841416 71841460 -155683118 + AT_rich Low_complexity Low_complexity 1 44 0 1662 108 123 0 chr3 71841690 71841958 -155682620 + AluSx SINE Alu 1 301 -1 2419 62 3 7 chr3 71842664 71842954 -155681624 + AluSc SINE Alu 1 289 -20 1532 215 19 25 chr3 71843212 71843579 -155680999 + MLT1A1 LTR MaLR 1 365 0 2182 130 0 7 chr3 71843856 71844164 -155680414 - AluJb SINE Alu 0 312 7 318 313 120 37 chr3 71844351 71844651 -155679927 + L2 LINE L2 2478 2802 -512 545 245 38 43 chr3 71844803 71844987 -155679591 + LTR41 LTR ERVL 1 183 -590 1991 103 51 7 chr3 71845284 71845576 -155679002 - AluSq SINE Alu -8 305 1 306 320 53 34 chr3 71845645 71845851 -155678727 + L2 LINE L2 3084 3293 -20 423 269 113 76 chr3 71846016 71846152 -155678426 + L1MEc LINE L1 744 874 -5522 1906 156 3 19 chr3 71846152 71846467 -155678111 + AluSx SINE Alu 1 310 -2 1415 123 19 182 chr3 71846476 71846849 -155677729 + AluYb8 SINE Alu 3 314 -4 423 269 113 76 chr3 71846849 71847113 -155677465 + L1MEc LINE L1 881 1134 -5262 2080 109 0 4 chr3 71847113 71847247 -155677331 + AluSx SINE Alu 3 136 -176 2343 99 3 3 chr3 71847247 71847551 -155677027 + AluSp SINE Alu 1 304 -9 2080 109 0 4 chr3 71847551 71847690 -155676888 + AluSx SINE Alu 136 275 -37 225 0 0 0 chr3 71847695 71847720 -155676858 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 423 269 113 76 chr3 71847720 71848035 -155676543 + L1MEc LINE L1 1137 1503 -4893 1029 266 146 8 chr3 71848076 71848577 -155676001 + L1MEc LINE L1 1575 2144 -4252 1968 142 13 13 chr3 71848579 71848889 -155675689 + AluSg SINE Alu 1 310 0 1477 189 71 27 chr3 71848894 71849191 -155675387 + AluJb SINE Alu 1 310 -2 963 178 56 10 chr3 71849191 71849388 -155675190 + Tigger3b DNA MER2_type 341 546 -685 2516 62 3 0 chr3 71849411 71849724 -155674854 + AluY SINE Alu 1 314 0 716 165 0 0 chr3 71849724 71849839 -155674739 - AluJo/FLAM SINE Alu -196 116 2 2274 101 20 0 chr3 71849844 71850140 -155674438 - AluSp SINE Alu -11 302 1 1254 122 57 57 chr3 71850140 71850353 -155674225 + Tigger3b DNA MER2_type 968 1183 -1846 2224 114 7 0 chr3 71850353 71850660 -155673918 - AluSg SINE Alu -1 309 1 1254 122 57 57 chr3 71850660 71850691 -155673887 + Tigger3b DNA MER2_type 1182 1212 -20 233 218 91 0 chr3 71850806 71850861 -155673717 + Tigger3b DNA MER2_type 489 548 -684 2131 136 0 10 chr3 71850890 71851199 -155673379 + AluSg SINE Alu 1 306 -4 320 260 81 16 chr3 71851209 71851332 -155673246 + L1M4 LINE L1 3826 3956 -2190 1181 132 64 15 chr3 71851333 71851537 -155673041 + AluSc SINE Alu 94 307 -2 2199 86 14 7 chr3 71851563 71851853 -155672725 + AluSx SINE Alu 13 304 -8 555 188 45 15 chr3 71851990 71852123 -155672455 + FLAM_C SINE Alu 7 143 0 2251 98 7 0 chr3 71852141 71852437 -155672141 + AluSx SINE Alu 1 298 -14 2223 111 10 0 chr3 71859995 71860293 -155664285 + AluSq SINE Alu 1 301 -12 2191 109 23 0 chr3 71860296 71860599 -155663979 + AluSq SINE Alu 4 313 0 2325 103 3 6 chr3 71860599 71860955 -155663623 + AluSp SINE Alu 1 355 0 1700 172 36 3 chr3 71861362 71861664 -155662914 + AluJb SINE Alu 1 312 0 269 109 22 0 chr3 71862272 71862318 -155662260 + CT-rich Low_complexity Low_complexity 2 48 0 1906 170 0 16 chr3 71862633 71862950 -155661628 + AluJb SINE Alu 1 312 0 1898 161 23 0 chr3 71863021 71863320 -155661258 + AluSx SINE Alu 1 306 -6 1320 127 150 9 chr3 71863549 71863769 -155660809 + AluSg1 SINE Alu 55 305 -4 2356 70 31 0 chr3 71863868 71864155 -155660423 + AluY SINE Alu 1 296 -15 2274 108 6 16 chr3 71864450 71864765 -155659813 + AluSx SINE Alu 1 312 0 1145 100 7 0 chr3 71864765 71864958 -155659620 + AluY SINE Alu 132 325 0 515 214 201 13 chr3 71864968 71865274 -155659304 + L1MC/D LINE L1 5327 5673 -587 629 162 8 8 chr3 71865411 71865528 -155659050 - FLAM_A SINE Alu -8 134 18 205 307 110 24 chr3 71865914 71866041 -155658537 - MIR3 SINE MIR -41 167 30 1546 163 3 83 chr3 71866310 71866610 -155657968 + AluJo SINE Alu 7 282 -30 1325 105 6 0 chr3 71866610 71866782 -155657796 - AluSg/x SINE Alu -6 306 134 2087 98 59 0 chr3 71866782 71867068 -155657510 - AluSg SINE Alu -7 303 1 265 297 148 33 chr3 71868205 71868387 -155656191 - MIR SINE MIR -7 255 53 2345 86 7 10 chr3 71869281 71869584 -155654994 - AluSg1 SINE Alu -7 302 1 21 0 0 0 chr3 71869852 71869873 -155654705 + AT_rich Low_complexity Low_complexity 1 21 0 2050 111 57 7 chr3 71869883 71870181 -155654397 + AluSp SINE Alu 1 313 0 2294 92 3 0 chr3 71870252 71870544 -155654034 - AluSx SINE Alu -19 293 1 853 187 177 5 chr3 71870553 71870751 -155653827 - AluSg/x SINE Alu -13 296 65 23 0 0 0 chr3 71870831 71870854 -155653724 + AT_rich Low_complexity Low_complexity 1 23 0 2192 118 3 13 chr3 71870972 71871277 -155653301 + AluSx SINE Alu 1 302 -10 2410 98 0 3 chr3 71871525 71871831 -155652747 + AluY SINE Alu 1 305 -6 2133 129 0 0 chr3 71872701 71872988 -155651590 + AluSg SINE Alu 1 287 -23 2182 89 7 33 chr3 71873529 71873831 -155650747 + AluSq SINE Alu 1 294 -19 245 293 0 0 chr3 71873967 71874025 -155650553 + MIR SINE MIR 154 211 -51 4302 77 0 13 chr3 71874440 71874781 -155649797 + LTR10C LTR ERV1 1 332 -259 2423 75 0 13 chr3 71874781 71875088 -155649490 + AluY SINE Alu 1 303 -8 4302 77 0 13 chr3 71875088 71875345 -155649233 + LTR10C LTR ERV1 332 591 0 1806 119 0 4 chr3 71875376 71875629 -155648949 + AluSg SINE Alu 56 307 -3 1953 99 0 8 chr3 71875696 71875948 -155648630 - AluSg SINE Alu -6 304 55 260 260 27 47 chr3 71876152 71876302 -155648276 + L2 LINE L2 2914 3060 -212 1400 193 4 40 chr3 71877154 71877246 -155647332 + AluJo SINE Alu 35 129 -183 2535 63 3 3 chr3 71877246 71877547 -155647031 - AluY SINE Alu -10 301 1 1400 193 4 40 chr3 71877547 71877729 -155646849 + AluJo SINE Alu 129 299 -13 2003 117 57 0 chr3 71877730 71878013 -155646565 + AluSq SINE Alu 1 299 -14 1364 155 5 0 chr3 71878014 71878227 -155646351 + AluSg/x SINE Alu 85 298 -12 1341 171 93 8 chr3 71878386 71878643 -155645935 - AluJo SINE Alu -33 279 1 270 206 404 22 chr3 71879874 71880010 -155644568 - MER5A DNA MER1_type -1 188 1 530 279 60 44 chr3 71880286 71880351 -155644227 + MIR SINE MIR 2 64 -198 2088 104 28 17 chr3 71880351 71880669 -155643909 + AluSq SINE Alu 1 313 0 530 279 60 44 chr3 71880669 71880854 -155643724 + MIR SINE MIR 64 256 -6 2088 97 39 4 chr3 71880985 71881287 -155643291 - AluSx SINE Alu 0 312 1 1523 189 0 23 chr3 71881745 71881884 -155642694 + AluJb SINE Alu 1 133 -179 2262 116 6 6 chr3 71881884 71882195 -155642383 + AluSx SINE Alu 1 311 -1 1523 189 0 23 chr3 71882195 71882320 -155642258 + AluJb SINE Alu 133 259 -53 526 275 54 45 chr3 71883235 71883457 -155641121 - MIR SINE MIR -32 230 7 183 278 134 0 chr3 71883521 71883618 -155640960 + L2 LINE L2 2330 2439 -875 187 256 289 0 chr3 71883639 71883729 -155640849 + L2 LINE L2 3198 3313 0 296 162 88 0 chr3 71884906 71884974 -155639604 - Tigger5 DNA MER2_type 0 2323 2250 512 139 73 73 chr3 71885340 71885392 -155639186 + FLAM_C SINE Alu 2 53 -259 234 0 0 0 chr3 71885392 71885418 -155639160 + (G)n Simple_repeat Simple_repeat 1 26 0 512 139 73 73 chr3 71885418 71885502 -155639076 + FLAM_C SINE Alu 52 138 -174 2174 125 0 0 chr3 71885519 71885807 -155638771 - AluSx SINE Alu -21 291 4 211 211 57 0 chr3 71885947 71886011 -155638567 + MIR SINE MIR 70 139 -69 354 335 54 6 chr3 71886096 71886263 -155638315 - L2 LINE L2 0 3313 3139 1453 139 0 9 chr3 71887406 71887622 -155636956 + AluJb SINE Alu 85 298 -14 189 279 0 0 chr3 71888557 71888600 -155635978 + L2 LINE L2 2992 3034 -238 2216 121 0 0 chr3 71888773 71889062 -155635516 + AluSx SINE Alu 15 303 -9 1683 124 14 58 chr3 71889089 71889364 -155635214 + AluJb SINE Alu 1 263 -49 2316 92 66 20 chr3 71889593 71889941 -155634637 - THE1B LTR MaLR 0 364 1 12107 89 8 6 chr3 71889941 71891519 -155633059 - THE1B-int LTR MaLR 0 1580 1 2134 112 52 60 chr3 71891519 71891732 -155632846 - THE1B LTR MaLR 0 364 154 2029 136 3 0 chr3 71891732 71892026 -155632552 - AluSg SINE Alu -15 295 1 2134 112 52 60 chr3 71892026 71892179 -155632399 - THE1B LTR MaLR -210 154 1 295 256 34 0 chr3 71892179 71892249 -155632329 + FAM SINE Alu 18 60 -242 1662 128 0 0 chr3 71892249 71892484 -155632094 + AluSx SINE Alu 1 235 -77 295 256 34 0 chr3 71892484 71892514 -155632064 + FAM SINE Alu 60 88 -78 505 209 0 26 chr3 71892514 71892629 -155631949 + FAM SINE Alu 72 183 -2 2178 99 10 3 chr3 71892639 71892942 -155631636 + AluSg SINE Alu 1 305 -5 428 235 80 32 chr3 71893411 71893576 -155631002 + MIR SINE MIR 16 187 -75 1060 176 20 65 chr3 71893612 71893692 -155630886 + AluJo SINE Alu 66 148 -164 2224 78 0 0 chr3 71893692 71894002 -155630576 + AluY SINE Alu 1 310 0 1060 176 20 65 chr3 71894002 71894165 -155630413 + AluJo SINE Alu 148 299 -13 9602 117 56 114 chr3 71894165 71894287 -155630291 - Tigger1 DNA MER2_type -210 2208 2080 2245 95 0 7 chr3 71894287 71894591 -155629987 - AluSp SINE Alu -11 302 1 9602 117 56 114 chr3 71894591 71894933 -155629645 - Tigger1 DNA MER2_type -338 2080 1720 2130 95 0 26 chr3 71894933 71895238 -155629340 - AluSc SINE Alu -12 297 1 1574 141 0 34 chr3 71895239 71895501 -155629077 - AluSx SINE Alu -18 294 42 1983 98 25 7 chr3 71895510 71895795 -155628783 - AluSg1 SINE Alu -19 290 1 9602 117 56 114 chr3 71895795 71895933 -155628645 - Tigger1 DNA MER2_type -706 1712 1568 2026 112 7 7 chr3 71895933 71896219 -155628359 - AluSx SINE Alu -19 293 8 9602 117 56 114 chr3 71896219 71896265 -155628313 - Tigger1 DNA MER2_type -850 1568 1521 2285 80 3 0 chr3 71896265 71896564 -155628014 - AluY SINE Alu -9 302 3 9602 117 56 114 chr3 71896564 71896706 -155627872 - Tigger1 DNA MER2_type -897 1521 1372 771 124 0 97 chr3 71896706 71896851 -155627727 - FLAM_C SINE Alu -12 131 1 9602 117 56 114 chr3 71896851 71898054 -155626524 - Tigger1 DNA MER2_type -1046 1372 197 2180 116 0 3 chr3 71898054 71898357 -155626221 + AluSx SINE Alu 1 302 -10 9602 117 56 114 chr3 71898357 71898520 -155626058 - Tigger1 DNA MER2_type -2221 197 26 188 291 204 0 chr3 71898521 71898624 -155625954 + L2 LINE L2 3172 3295 -18 356 267 80 13 chr3 71898655 71898805 -155625773 + MER106B DNA MER1_type 896 1055 -4 369 235 0 24 chr3 71899047 71899132 -155625446 + MIR SINE MIR 50 132 -76 23 0 0 0 chr3 71900404 71900427 -155624151 + GC_rich Low_complexity Low_complexity 1 23 0 1822 80 0 16 chr3 71901163 71901412 -155623166 - AluSq SINE Alu -68 245 1 2338 28 0 24 chr3 71901611 71901926 -155622652 - AluY SINE Alu 0 310 3 1698 166 0 35 chr3 71901928 71902241 -155622337 - AluJb SINE Alu -10 302 1 1473 176 56 18 chr3 71902535 71902652 -155621926 + AluJb SINE Alu 1 112 -200 414 0 0 0 chr3 71902652 71902698 -155621880 + (CA)n Simple_repeat Simple_repeat 1 46 0 1473 176 56 18 chr3 71902698 71902864 -155621714 + AluJb SINE Alu 112 295 -17 1313 147 9 0 chr3 71903009 71903220 -155621358 + AluJo SINE Alu 86 298 -14 198 162 54 0 chr3 71903365 71903402 -155621176 + MER5A DNA MER1_type 64 102 -87 1242 187 128 8 chr3 71903896 71904338 -155620240 - MLT1H LTR MaLR -8 541 1 239 224 40 13 chr3 71904732 71904808 -155619770 + MLT1K LTR MaLR 448 525 -63 2073 97 20 17 chr3 71904915 71905214 -155619364 - AluSq SINE Alu -13 300 1 221 360 10 20 chr3 71905836 71905936 -155618642 + MIR SINE MIR 86 184 -78 367 237 11 0 chr3 71906178 71906271 -155618307 + MER53 DNA DNA 1 94 -95 297 235 12 12 chr3 71906200 71906285 -155618293 - MER53 DNA DNA -12 177 93 * 22 35 0 0 chr3 71906368 71906397 -155618181 + GC_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 71906933 71906954 -155617624 + GC_rich Low_complexity Low_complexity 1 21 0 1134 162 0 0 chr3 71907232 71907423 -155617155 - AluJb SINE Alu 0 312 122 2077 82 43 4 chr3 71908395 71908675 -155615903 + AluSc SINE Alu 14 304 -5 418 305 52 85 chr3 71908692 71908965 -155615613 + L1MC4 LINE L1 7609 7949 -93 276 231 0 0 chr3 71910946 71910998 -155613580 + MLT1C LTR MaLR 416 467 0 307 277 10 10 chr3 71911040 71911141 -155613437 + L1MC3 LINE L1 7683 7783 -2 249 333 37 32 chr3 71911407 71911610 -155612968 + MIR SINE MIR 18 223 -39 1858 144 34 0 chr3 71912178 71912469 -155612109 + AluJo SINE Alu 1 301 -11 2290 85 3 0 chr3 71912601 71912896 -155611682 + AluSp SINE Alu 1 296 -17 818 160 0 0 chr3 71912900 71913025 -155611553 - FLAM_C SINE Alu -18 125 1 818 177 15 0 chr3 71913087 71913217 -155611361 + AluSq/x SINE Alu 1 132 -180 373 334 109 41 chr3 71913263 71913631 -155610947 + L1MC4 LINE L1 6768 7160 -882 1827 139 42 0 chr3 71913716 71913882 -155610696 - AluSx SINE Alu -13 299 115 210 37 0 0 chr3 71913882 71913909 -155610669 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1827 139 42 0 chr3 71913909 71914029 -155610549 - AluSx SINE Alu -197 115 1 401 320 36 44 chr3 71914050 71914220 -155610358 + L1MC4a LINE L1 5111 5281 -865 1552 175 73 0 chr3 71914220 71914494 -155610084 + AluJb SINE Alu 1 294 -18 2154 136 0 0 chr3 71914498 71914808 -155609770 + AluSx SINE Alu 1 310 -2 401 320 36 44 chr3 71914808 71914857 -155609721 + L1MC4a LINE L1 5284 5333 -813 880 120 46 51 chr3 71914860 71914983 -155609595 + L1MA8 LINE L1 6116 6239 -52 2138 108 0 33 chr3 71914983 71915119 -155609459 + AluSx SINE Alu 1 140 -172 2086 127 0 16 chr3 71915119 71915433 -155609145 + AluSg1 SINE Alu 1 309 0 2138 108 0 33 chr3 71915433 71915603 -155608975 + AluSx SINE Alu 140 297 -15 880 120 46 51 chr3 71915603 71915654 -155608924 + L1MA8 LINE L1 6239 6289 -2 675 292 33 30 chr3 71915690 71915991 -155608587 + L1MC4a LINE L1 5298 5599 -2209 583 314 144 14 chr3 71916137 71916337 -155608241 + L1MC4a LINE L1 5910 6157 -1651 2061 138 7 0 chr3 71916337 71916641 -155607937 - AluJb SINE Alu -6 306 1 583 314 144 14 chr3 71916641 71916717 -155607861 + L1MC4a LINE L1 6157 6222 -1586 317 324 20 7 chr3 71917441 71917589 -155606989 + (TCCA)n Simple_repeat Simple_repeat 3 152 0 205 188 0 42 chr3 71919560 71919608 -155604970 + C-rich Low_complexity Low_complexity 6 51 0 334 273 161 14 chr3 71920277 71920563 -155604015 + L2 LINE L2 2248 2575 -739 426 304 93 20 chr3 71920656 71920903 -155603675 + L2 LINE L2 2844 3108 -205 972 185 7 3 chr3 71921262 71921708 -155602870 + (TCCA)n Simple_repeat Simple_repeat 1 627 0 790 206 6 1 chr3 71921741 71922442 -155602136 + (TCCA)n Simple_repeat Simple_repeat 1 704 0 635 215 6 0 chr3 71922467 71922639 -155601939 + (TCCA)n Simple_repeat Simple_repeat 2 174 0 369 341 112 25 chr3 71922639 71922721 -155601857 - L2 LINE L2 0 3313 3239 2080 127 10 0 chr3 71922721 71923054 -155601524 + AluSx SINE Alu 1 312 0 369 341 112 25 chr3 71923054 71923285 -155601293 - L2 LINE L2 -74 3239 2973 244 279 38 13 chr3 71923392 71923471 -155601107 + MLT1K LTR MaLR 166 246 -342 256 268 89 18 chr3 71923548 71923660 -155600918 + MLT1K LTR MaLR 467 586 -2 185 233 68 68 chr3 72025060 72025133 -155499445 + MIR3 SINE MIR 131 203 -5 22 35 0 0 chr3 72026258 72026287 -155498291 + AT_rich Low_complexity Low_complexity 1 29 0 615 264 93 23 chr3 72027126 72027342 -155497236 + MIR SINE MIR 6 236 -26 227 297 47 40 chr3 72027336 72027484 -155497094 - MIR SINE MIR -111 151 3 * 1175 273 118 34 chr3 72028205 72028919 -155495659 - L1MC4a LINE L1 -1742 6066 5293 329 303 172 22 chr3 72028931 72029198 -155495380 - L1MC4a LINE L1 -890 5256 4950 243 0 0 0 chr3 72031232 72031259 -155493319 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 23 33 0 0 chr3 72032692 72032722 -155491856 + AT_rich Low_complexity Low_complexity 1 30 0 2081 108 29 26 chr3 72033609 72033916 -155490662 - AluSg SINE Alu 0 310 3 215 226 0 19 chr3 72034269 72034322 -155490256 + L2 LINE L2 3262 3313 0 982 88 0 68 chr3 72034460 72034607 -155489971 + AluSg/x SINE Alu 157 293 -16 746 289 157 25 chr3 72034671 72035251 -155489327 + L2 LINE L2 2610 3257 -56 22 0 0 0 chr3 72036540 72036562 -155488016 + AT_rich Low_complexity Low_complexity 1 22 0 500 261 192 20 chr3 72038908 72039111 -155485467 + L2 LINE L2 3073 3310 -3 248 265 142 29 chr3 72039796 72039965 -155484613 + MIR SINE MIR 27 212 -50 448 291 22 15 chr3 72041383 72041517 -155483061 - MIR SINE MIR -75 187 53 370 292 102 69 chr3 72044365 72044581 -155479997 + MIR SINE MIR 7 229 -33 294 290 65 0 chr3 72044537 72044630 -155479948 - MIR SINE MIR 0 262 164 * 539 254 56 7 chr3 72044631 72044773 -155479805 - MIR SINE MIR -15 247 99 1312 179 144 12 chr3 72045614 72045871 -155478707 + AluJo SINE Alu 1 291 -11 1426 201 46 14 chr3 72045875 72046159 -155478419 + AluJo SINE Alu 1 293 -19 623 292 133 0 chr3 72046267 72046493 -155478085 + MIR SINE MIR 1 256 -6 240 250 180 0 chr3 72046898 72046998 -155477580 + MIR SINE MIR 124 241 -21 180 0 0 0 chr3 72049244 72049264 -155475314 + (CAA)n Simple_repeat Simple_repeat 2 21 0 246 323 99 31 chr3 72050077 72050269 -155474309 + MIR SINE MIR 6 210 -52 211 263 150 0 chr3 72050563 72050643 -155473935 + MIR SINE MIR 62 153 -109 250 331 65 16 chr3 72052001 72052125 -155472453 - MIR SINE MIR -96 166 37 1814 137 13 43 chr3 72052181 72052481 -155472097 + AluJo SINE Alu 1 291 -21 1351 101 78 18 chr3 72053812 72054029 -155470549 + MER30 DNA MER1_type 1 230 0 234 270 79 11 chr3 72055764 72055853 -155468725 + MARNA DNA Mariner 332 426 -160 4569 152 37 24 chr3 72058337 72058386 -155466192 - L1MB7 LINE L1 -13 6171 6124 1695 153 20 36 chr3 72058386 72058521 -155466057 + AluSx SINE Alu 1 137 -175 2467 64 3 0 chr3 72058521 72058817 -155465761 + AluY SINE Alu 1 297 -14 1695 153 20 36 chr3 72058817 72058982 -155465596 + AluSx SINE Alu 137 296 -16 4569 152 37 24 chr3 72058982 72059912 -155464666 - L1MB7 LINE L1 -60 6124 5184 312 96 39 0 chr3 72059907 72059959 -155464619 - L1MB7 LINE L1 -1421 4725 4672 * 794 192 103 0 chr3 72059995 72060219 -155464359 - L1MB7 LINE L1 -1712 4434 4188 419 176 11 0 chr3 72060491 72060582 -155463996 + (CA)n Simple_repeat Simple_repeat 2 93 0 1380 169 159 3 chr3 72063429 72063719 -155460859 - MER44D DNA MER2_type -4 605 1 1822 149 3 29 chr3 72065426 72065734 -155458844 + AluJb SINE Alu 1 300 -12 25 83 0 0 chr3 72065868 72065928 -155458650 + AT_rich Low_complexity Low_complexity 1 60 0 1927 123 25 0 chr3 72066180 72066456 -155458122 + AluSx SINE Alu 1 283 -29 817 193 112 16 chr3 72069180 72069367 -155455211 + AluJo SINE Alu 82 286 -26 21 36 0 0 chr3 72069929 72069957 -155454621 + AT_rich Low_complexity Low_complexity 1 28 0 642 225 96 38 chr3 72071649 72071858 -155452720 - MIR SINE MIR -37 225 5 209 288 62 38 chr3 72073851 72073931 -155450647 + MIR SINE MIR 58 139 -123 2652 165 43 4 chr3 72073958 72074466 -155450112 + L1MA9 LINE L1 5254 5781 -531 664 218 73 50 chr3 72074461 72074722 -155449856 + L1MA9 LINE L1 5987 6253 -59 * 1258 195 79 32 chr3 72075870 72076147 -155448431 - AluJo SINE Alu -22 290 1 193 317 24 0 chr3 72076986 72077068 -155447510 - MIR SINE MIR -131 131 48 216 373 148 7 chr3 72078683 72078825 -155445753 + L2 LINE L2 3097 3258 -14 494 190 35 43 chr3 72079531 72079647 -155444931 + Charlie1 DNA MER1_type 83 197 -2564 546 206 84 0 chr3 72079649 72079780 -155444798 + Charlie1 DNA MER1_type 2620 2761 0 608 305 48 79 chr3 72081354 72081922 -155442656 + L1ME LINE L1 2607 3156 -2990 2333 91 0 0 chr3 72082010 72082307 -155442271 + AluSg SINE Alu 1 297 -13 332 241 200 20 chr3 72082315 72082510 -155442068 + L1MC5 LINE L1 7654 7883 -78 236 207 0 110 chr3 72082645 72082727 -155441851 - MIR SINE MIR -6 256 184 494 244 87 30 chr3 72082735 72082935 -155441643 + MIR SINE MIR 65 262 0 448 269 93 100 chr3 72083059 72084545 -155440033 + L1ME LINE L1 3682 5157 -989 593 259 112 28 chr3 72084678 72084964 -155439614 + L1ME LINE L1 5328 5637 -533 244 342 92 0 chr3 72085263 72085362 -155439216 + MIR SINE MIR 41 146 -74 1224 157 43 0 chr3 72086238 72086448 -155438130 + MER20 DNA MER1_type 1 219 0 1210 170 29 15 chr3 72087375 72087581 -155436997 + AluJo SINE Alu 12 220 -92 425 200 264 32 chr3 72087629 72087754 -155436824 + FRAM SINE Alu 1 154 -12 423 310 126 0 chr3 72087865 72088039 -155436539 + MIR SINE MIR 1 196 -66 22 0 0 0 chr3 72088799 72088821 -155435757 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 72091799 72091820 -155432758 + AT_rich Low_complexity Low_complexity 1 21 0 797 304 35 64 chr3 72092702 72093048 -155431530 + MER102b DNA MER1_type 1 336 -5 602 266 100 25 chr3 72094182 72094423 -155430155 + MIR SINE MIR 1 259 -3 2232 121 7 0 chr3 72094566 72094873 -155429705 + AluSx SINE Alu 1 309 -3 1099 290 85 10 chr3 72095950 72096360 -155428218 + L2 LINE L2 2041 2481 -833 535 222 78 17 chr3 72096375 72096555 -155428023 + L1ME LINE L1 5298 5488 -678 * 1185 223 110 40 chr3 72096525 72097023 -155427555 + L1MCa LINE L1 1122 1654 -4772 2488 29 0 0 chr3 72097512 72097793 -155426785 - AluYb8 SINE Alu 0 318 38 249 33 0 0 chr3 72098771 72098801 -155425777 + (CA)n Simple_repeat Simple_repeat 2 31 0 2018 154 0 0 chr3 72098821 72099120 -155425458 + AluSx SINE Alu 3 301 -11 187 424 0 11 chr3 72099248 72099340 -155425238 - L2 LINE L2 -221 3051 2961 7509 83 25 1 chr3 72099536 72101399 -155423179 + L1PA8 LINE L1 4273 6172 0 187 273 0 18 chr3 72102263 72102318 -155422260 - MIR SINE MIR -50 212 159 1969 171 12 3 chr3 72103151 72103496 -155421082 - MER7A DNA MER2_type 0 346 1 843 293 147 21 chr3 72103938 72104529 -155420049 - L2 LINE L2 -41 3272 2616 336 314 78 44 chr3 72104865 72105012 -155419566 + Charlie8 DNA MER1_type 2 159 -2258 2363 66 7 3 chr3 72105012 72105314 -155419264 + AluY SINE Alu 1 303 -8 336 314 78 44 chr3 72105314 72105370 -155419208 + Charlie8 DNA MER1_type 159 212 -2205 2313 92 3 9 chr3 72107195 72107510 -155417068 + AluSp SINE Alu 1 313 0 344 200 0 0 chr3 72108430 72108485 -155416093 + Tigger5 DNA MER2_type 1 55 -2268 516 198 11 0 chr3 72108490 72108581 -155415997 + Tigger5 DNA MER2_type 2232 2323 0 493 204 39 19 chr3 72108603 72108706 -155415872 + MER39 LTR ERV1 1 105 -602 843 154 0 0 chr3 72108708 72108844 -155415734 - FLAM_C SINE Alu -1 142 7 1079 204 100 62 chr3 72108860 72109292 -155415286 + LTR48 LTR ERV1 64 700 -87 2040 110 76 17 chr3 72109292 72109646 -155414932 - THE1C LTR MaLR 0 375 1 1079 204 100 62 chr3 72109646 72109738 -155414840 + LTR48 LTR ERV1 700 787 0 537 215 135 43 chr3 72110924 72111087 -155413491 + MIR SINE MIR 71 248 -14 806 289 107 22 chr3 72112121 72112485 -155412093 - L2 LINE L2 0 3313 2919 285 199 372 8 chr3 72115155 72115279 -155409299 + MER45A DNA AcHobo 1 178 0 22 0 0 0 chr3 72116567 72116589 -155407989 + AT_rich Low_complexity Low_complexity 1 22 0 293 300 0 0 chr3 72118228 72118298 -155406280 - L2 LINE L2 -1 3271 3202 1586 157 3 60 chr3 72118442 72118741 -155405837 + AluJo SINE Alu 1 282 -30 257 311 123 18 chr3 72119109 72119563 -155405015 + L1M4 LINE L1 4047 4548 -1598 2283 66 31 3 chr3 72120093 72120382 -155404196 + AluSc SINE Alu 1 297 -12 1370 204 91 67 chr3 72120977 72121559 -155403019 - L1MC5 LINE L1 -36 7925 7330 1175 172 77 14 chr3 72121561 72121846 -155402732 - MER33 DNA MER1_type -2 322 20 1703 230 32 48 chr3 72121908 72122508 -155402070 - L1MC5 LINE L1 -723 7238 6649 247 225 152 73 chr3 72122706 72122857 -155401721 - L1MC4a LINE L1 -1451 6357 6195 231 330 68 51 chr3 72123056 72123174 -155401404 - L2 LINE L2 0 3272 3153 190 262 0 0 chr3 72123422 72123464 -155401114 + L2 LINE L2 3272 3313 0 21 0 0 0 chr3 72125154 72125175 -155399403 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr3 72127476 72127497 -155397081 + (TG)n Simple_repeat Simple_repeat 2 22 0 186 43 0 0 chr3 72128581 72128604 -155395974 + (A)n Simple_repeat Simple_repeat 1 23 0 21 0 0 0 chr3 72129803 72129824 -155394754 + AT_rich Low_complexity Low_complexity 1 21 0 255 31 0 0 chr3 72130610 72130642 -155393936 + (GA)n Simple_repeat Simple_repeat 1 32 0 594 193 9 132 chr3 72132105 72132318 -155392260 - L2 LINE L2 0 3313 3127 2694 165 47 4 chr3 72132532 72133022 -155391556 + L1MB3 LINE L1 5671 6181 -2 860 148 49 0 chr3 72133327 72133469 -155391109 + MER3 DNA MER1_type 7 155 -54 * 1021 154 68 8 chr3 72133461 72133635 -155390943 + MER3 DNA MER1_type 2244 2406 -179 2494 111 22 8 chr3 72133635 72134005 -155390573 + THE1C LTR MaLR 1 375 0 1021 154 68 8 chr3 72134005 72134109 -155390469 + MER3 DNA MER1_type 2406 2581 -4 2013 127 19 10 chr3 72134159 72134487 -155390091 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 72134576 72134597 -155389981 + AT_rich Low_complexity Low_complexity 1 21 0 837 138 0 0 chr3 72134662 72134778 -155389800 + FLAM_C SINE Alu 3 118 -25 2521 52 0 3 chr3 72134914 72135220 -155389358 + AluY SINE Alu 1 305 -6 200 306 59 0 chr3 72135485 72135570 -155389008 - MIR SINE MIR -90 172 83 215 31 31 0 chr3 72135848 72135880 -155388698 + (TTTTTG)n Simple_repeat Simple_repeat 4 36 0 2222 270 156 21 chr3 72136442 72136587 -155387991 + L2 LINE L2 1848 1972 -1341 1785 162 27 10 chr3 72136587 72136884 -155387694 - AluJo SINE Alu -9 303 2 2222 270 156 21 chr3 72136884 72137861 -155386717 + L2 LINE L2 1972 3164 -149 2370 122 120 5 chr3 72137861 72138245 -155386333 + MSTA LTR MaLR 1 428 0 2222 270 156 21 chr3 72138245 72138417 -155386161 + L2 LINE L2 3164 3312 -1 561 311 68 39 chr3 72138554 72138941 -155385637 + L1ME LINE L1 5339 5737 -384 387 148 0 0 chr3 72139035 72139096 -155385482 + U3 snRNA snRNA 15 75 -142 252 228 0 154 chr3 72139136 72139272 -155385306 + L1ME LINE L1 5785 5851 -319 330 352 97 6 chr3 72139506 72139682 -155384896 - L2 LINE L2 -356 2958 2767 2004 133 7 3 chr3 72139780 72140080 -155384498 - AluSx SINE Alu -11 301 1 2017 125 3 19 chr3 72140320 72140631 -155383947 + AluSx SINE Alu 2 307 -5 2016 131 3 19 chr3 72140641 72140955 -155383623 + AluSx SINE Alu 1 309 -3 361 299 140 45 chr3 72141019 72141377 -155383201 - L2 LINE L2 -1 3312 2921 2005 118 38 3 chr3 72141425 72141714 -155382864 + AluSx SINE Alu 1 299 -13 251 240 10 96 chr3 72142189 72142293 -155382285 + MER112 DNA MER1_type 1 95 -165 1828 117 62 52 chr3 72142319 72142627 -155381951 + AluSx SINE Alu 1 311 -1 545 237 39 68 chr3 72142665 72142724 -155381854 + L1MC5 LINE L1 7604 7663 -298 1536 166 54 18 chr3 72142724 72143002 -155381576 - AluJo SINE Alu -24 288 1 545 237 39 68 chr3 72143002 72143279 -155381299 + L1MC5 LINE L1 7663 7930 -31 2056 142 0 7 chr3 72143282 72143585 -155380993 + AluSx SINE Alu 1 301 -11 2287 110 7 0 chr3 72143595 72143904 -155380674 + AluSq SINE Alu 1 311 -2 711 211 0 0 chr3 72144995 72145123 -155379455 + MLT1L LTR MaLR 149 276 -339 371 200 158 0 chr3 72145272 72145367 -155379211 + MLT1L LTR MaLR 506 615 0 2082 124 0 0 chr3 72145493 72145784 -155378794 + AluSx SINE Alu 1 291 -21 233 160 60 0 chr3 72146656 72146706 -155377872 + L2 LINE L2 3257 3309 -4 22 0 0 0 chr3 72148175 72148197 -155376381 + AT_rich Low_complexity Low_complexity 1 22 0 1965 134 30 17 chr3 72148845 72149143 -155375435 + AluSx SINE Alu 1 302 -10 761 249 106 48 chr3 72149259 72149861 -155374717 - L2 LINE L2 -3 3310 2682 245 255 0 133 chr3 72149843 72149941 -155374637 - L2 LINE L2 -10 3262 3178 * 225 135 77 39 chr3 72149941 72149993 -155374585 - MER4E LTR ERV1 -436 330 277 342 301 37 89 chr3 72150025 72150351 -155374227 - L2 LINE L2 -174 3139 2831 359 259 159 5 chr3 72150914 72151103 -155373475 - L2 LINE L2 -19 3294 3077 2469 84 0 0 chr3 72152571 72152880 -155371698 - AluY SINE Alu -2 309 1 291 268 0 24 chr3 72153734 72153816 -155370762 - MLT1K LTR MaLR -496 92 13 489 251 117 29 chr3 72154511 72154750 -155369828 + L2 LINE L2 3053 3312 -1 212 230 58 81 chr3 72154852 72154939 -155369639 - L2 LINE L2 -37 3276 3192 786 232 0 27 chr3 72155109 72155294 -155369284 + L1PB4 LINE L1 5974 6153 -3 192 282 14 14 chr3 72155340 72155411 -155369167 - MIR SINE MIR -121 141 71 473 324 18 13 chr3 72155612 72155836 -155368742 - MIR SINE MIR -9 253 30 1054 240 138 42 chr3 72156088 72156538 -155368040 - MLT1K LTR MaLR -94 494 2 232 284 90 0 chr3 72156602 72156669 -155367909 + L2 LINE L2 3113 3185 -87 180 0 0 0 chr3 72156669 72156689 -155367889 + (TC)n Simple_repeat Simple_repeat 2 21 0 516 167 0 0 chr3 72156690 72156786 -155367792 + (TA)n Simple_repeat Simple_repeat 1 96 0 2510 63 3 0 chr3 72156786 72157087 -155367491 - AluY SINE Alu -9 302 1 263 290 0 0 chr3 72157102 72157171 -155367407 + L2 LINE L2 3242 3310 -3 294 258 108 84 chr3 72157270 72157437 -155367141 + MER5A DNA MER1_type 1 171 -18 287 339 52 0 chr3 72157473 72157588 -155366990 + MIR SINE MIR 48 168 -94 1361 118 72 118 chr3 72157599 72157920 -155366658 + AluJo SINE Alu 1 306 -6 637 242 117 35 chr3 72157999 72158230 -155366348 - MIR SINE MIR 0 262 13 189 0 0 0 chr3 72160671 72160692 -155363886 + (T)n Simple_repeat Simple_repeat 1 21 0 347 297 78 0 chr3 72162623 72162751 -155361827 + MIR SINE MIR 41 178 -84 23 0 0 0 chr3 72163202 72163225 -155361353 + GC_rich Low_complexity Low_complexity 1 23 0 235 143 0 0 chr3 72166195 72166237 -155358341 - MIR SINE MIR -115 147 106 342 45 0 0 chr3 72166868 72166912 -155357666 + (CCG)n Simple_repeat Simple_repeat 2 45 0 237 132 0 0 chr3 72170865 72170903 -155353675 + (T)n Simple_repeat Simple_repeat 1 38 0 343 182 11 11 chr3 72172472 72172560 -155352018 + CT-rich Low_complexity Low_complexity 1 88 0 220 208 13 13 chr3 72173308 72173385 -155351193 + (TA)n Simple_repeat Simple_repeat 1 77 0 284 324 64 35 chr3 72174306 72174479 -155350099 - MIR SINE MIR -15 247 70 1708 216 29 8 chr3 72174541 72174921 -155349657 + L1ME3A LINE L1 5536 5923 -247 268 151 19 0 chr3 72174948 72175001 -155349577 + L1ME3A LINE L1 6019 6072 -98 298 274 42 11 chr3 72176045 72176140 -155348438 - L2 LINE L2 -24 3289 3192 253 268 119 24 chr3 72176602 72176770 -155347808 + MIR SINE MIR 56 239 -23 1270 267 148 12 chr3 72176918 72177484 -155347094 - L1ME4a LINE L1 -1 6120 5478 568 185 9 0 chr3 72177498 72177606 -155346972 + AluSg/x SINE Alu 193 301 -9 2264 88 0 61 chr3 72177606 72177935 -155346643 + AluSx SINE Alu 1 309 -3 351 0 0 0 chr3 72178298 72178337 -155346241 + (TTCC)n Simple_repeat Simple_repeat 4 42 0 2239 126 0 0 chr3 72178338 72178647 -155345931 - AluSx SINE Alu -3 309 1 2607 59 0 3 chr3 72178661 72178967 -155345611 - AluY SINE Alu -6 305 1 614 205 38 22 chr3 72179455 72179640 -155344938 - L1MC5 LINE L1 -45 7916 7729 668 169 72 100 chr3 72179649 72179939 -155344639 - L1MC5 LINE L1 -292 7669 7388 183 191 85 0 chr3 72180032 72180079 -155344499 + L2 LINE L2 3146 3196 -76 419 155 0 0 chr3 72180475 72180546 -155344032 - AluSq SINE Alu -3 307 237 1327 83 41 0 chr3 72180546 72180715 -155343863 - AluSq SINE Alu -137 176 1 269 295 36 78 chr3 72181347 72181513 -155343065 - MIR SINE MIR -92 170 12 889 169 13 0 chr3 72181675 72181829 -155342749 + FRAM SINE Alu 19 174 -2 412 141 16 0 chr3 72182003 72182067 -155342511 - Charlie4a DNA MER1_type -20 488 424 1583 184 32 11 chr3 72182091 72182374 -155342204 - AluJo SINE Alu -23 289 1 524 162 7 52 chr3 72182374 72182499 -155342079 - Charlie4a DNA MER1_type -1522 439 319 2282 94 13 35 chr3 72182499 72182817 -155341761 - AluSp SINE Alu -2 311 1 2325 175 13 0 chr3 72182831 72183226 -155341352 - L1MA9 LINE L1 -239 6073 5674 762 197 90 7 chr3 72183227 72183472 -155341106 - Charlie4a DNA MER1_type -185 323 2 2358 65 14 14 chr3 72183596 72183889 -155340689 - AluSg SINE Alu -12 298 6 419 269 32 69 chr3 72184527 72184743 -155339835 - L1MC4a LINE L1 -1839 5969 5762 1418 263 101 24 chr3 72184869 72185325 -155339253 + LTR16C LTR ERVL 1 491 0 2148 130 10 0 chr3 72185708 72186015 -155338563 + AluSx SINE Alu 1 310 -2 515 285 0 109 chr3 72186025 72186292 -155338286 - MIR SINE MIR 0 262 25 24 0 0 0 chr3 72187710 72187734 -155336844 + AT_rich Low_complexity Low_complexity 1 24 0 382 305 96 30 chr3 72188011 72188178 -155336400 - L2 LINE L2 -3 3269 3092 24 77 0 0 chr3 72188671 72188723 -155335855 + AT_rich Low_complexity Low_complexity 1 52 0 467 303 33 14 chr3 72189520 72189731 -155334847 - L2 LINE L2 -420 2894 2680 213 39 0 0 chr3 72189939 72189965 -155334613 + (A)n Simple_repeat Simple_repeat 1 26 0 1884 244 156 25 chr3 72190106 72190852 -155333726 + L1ME3A LINE L1 5328 6170 0 2267 109 10 0 chr3 72191298 72191601 -155332977 + AluSg SINE Alu 1 306 -4 23 33 0 0 chr3 72191641 72191671 -155332907 + AT_rich Low_complexity Low_complexity 1 30 0 509 221 103 7 chr3 72191811 72191956 -155332622 + MIR SINE MIR 91 249 -13 181 250 0 45 chr3 72194542 72194586 -155329992 + L2 LINE L2 3170 3211 -61 2327 110 0 0 chr3 72194938 72195246 -155329332 - AluSg SINE Alu -2 308 1 181 167 37 0 chr3 72195814 72195868 -155328710 + (TGAA)n Simple_repeat Simple_repeat 1 56 0 203 209 0 23 chr3 72198633 72198676 -155325902 + (CA)n Simple_repeat Simple_repeat 2 43 0 216 0 0 0 chr3 72199124 72199148 -155325430 + (T)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr3 72199797 72199821 -155324757 + AT_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr3 72199889 72199912 -155324666 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 430 220 156 0 chr3 72200271 72200380 -155324198 - MIR3 SINE MIR -6 202 77 878 199 28 6 chr3 72200473 72200649 -155323929 - MER63A DNA MER1_type -24 186 7 665 217 203 9 chr3 72201247 72201459 -155323119 + MIR SINE MIR 5 257 -5 291 28 0 0 chr3 72201479 72201515 -155323063 + (CAT)n Simple_repeat Simple_repeat 2 37 0 660 253 59 0 chr3 72201859 72202029 -155322549 + MIR SINE MIR 69 248 -14 2140 120 7 7 chr3 72202074 72202383 -155322195 - AluSx SINE Alu -3 309 1 846 190 11 11 chr3 72202618 72202797 -155321781 - MER96B DNA MER1_type? -238 179 1 460 318 26 11 chr3 72203365 72203554 -155321024 - MIR SINE MIR -17 245 54 201 147 0 0 chr3 72204382 72204416 -155320162 + (CATA)n Simple_repeat Simple_repeat 4 37 0 245 181 103 37 chr3 72204765 72204849 -155319729 - MIR SINE MIR -64 144 64 515 217 118 26 chr3 72204909 72205061 -155319517 + MIR SINE MIR 76 241 -21 1821 159 7 11 chr3 72205167 72205450 -155319128 + AluJo SINE Alu 1 282 -30 216 0 0 0 chr3 72205455 72205479 -155319099 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr3 72206493 72206514 -155318064 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3 72206770 72206802 -155317776 + AT_rich Low_complexity Low_complexity 1 32 0 3283 139 40 2 chr3 72207611 72208129 -155316449 + L1MB2 LINE L1 5634 6171 0 21 0 0 0 chr3 72208234 72208255 -155316323 + AT_rich Low_complexity Low_complexity 1 21 0 197 65 32 0 chr3 72210228 72210259 -155314319 + (TTTC)n Simple_repeat Simple_repeat 3 34 0 1113 87 0 104 chr3 72211217 72211400 -155313178 - AluJb SINE Alu -15 297 134 456 161 111 0 chr3 72211519 72211600 -155312978 - MER103 DNA DNA -67 99 10 2221 114 7 0 chr3 72211625 72211932 -155312646 - AluSx SINE Alu -3 309 1 823 166 13 7 chr3 72212054 72212205 -155312373 + FRAM SINE Alu 22 173 -3 633 222 9 0 chr3 72212231 72212339 -155312239 + FLAM_A SINE Alu 1 109 -33 222 37 0 0 chr3 72212348 72212375 -155312203 + (GAAAA)n Simple_repeat Simple_repeat 4 30 0 436 241 17 17 chr3 72212376 72212492 -155312086 - MIR SINE MIR -13 249 134 1860 147 6 49 chr3 72212662 72212988 -155311590 - AluJb SINE Alu 0 312 1 468 35 0 0 chr3 72215209 72215267 -155309311 + (CA)n Simple_repeat Simple_repeat 2 59 0 212 184 20 0 chr3 72216806 72216855 -155307723 + CT-rich Low_complexity Low_complexity 4 53 0 1386 110 87 28 chr3 72216992 72217210 -155307368 - AluSq SINE Alu -82 231 1 2030 73 29 11 chr3 72218395 72218669 -155305909 + AluY SINE Alu 26 304 -7 1199 97 0 12 chr3 72218669 72218834 -155305744 + AluSq SINE Alu 137 299 -14 2086 120 24 3 chr3 72218903 72219195 -155305383 + AluSx SINE Alu 1 298 -14 364 283 10 0 chr3 72220239 72220338 -155304240 + L1ME LINE L1 5535 5634 -487 1831 133 15 0 chr3 72220369 72220633 -155303945 + AluSx SINE Alu 1 268 -44 22 56 0 0 chr3 72221931 72221967 -155302611 + AT_rich Low_complexity Low_complexity 1 36 0 456 269 145 0 chr3 72222785 72222930 -155301648 + MIR SINE MIR 97 262 0 260 237 75 32 chr3 72222922 72223015 -155301563 + MIR SINE MIR 109 205 -57 * 2254 99 0 0 chr3 72223347 72223639 -155300939 - AluY SINE Alu -19 292 1 180 261 22 22 chr3 72224062 72224108 -155300470 - L2 LINE L2 -8 3264 3219 192 248 99 69 chr3 72224189 72224290 -155300288 + MIR SINE MIR 92 195 -67 1042 162 111 5 chr3 72224368 72224566 -155300012 - MER20 DNA MER1_type 0 219 1 263 298 101 65 chr3 72224575 72224743 -155299835 + MER5B DNA MER1_type 2 175 -3 2325 107 0 0 chr3 72225305 72225605 -155298973 - AluSc SINE Alu -9 300 1 860 267 12 16 chr3 72225649 72225896 -155298682 - MIR SINE MIR 0 262 17 2307 87 0 26 chr3 72225942 72226252 -155298326 + AluY SINE Alu 1 302 -9 1060 176 42 32 chr3 72226604 72226820 -155297758 - MER20 DNA MER1_type 0 219 2 297 0 0 0 chr3 72227453 72227486 -155297092 + (T)n Simple_repeat Simple_repeat 1 33 0 1178 200 28 9 chr3 72227921 72228136 -155296442 + MER20 DNA MER1_type 1 219 0 563 271 120 4 chr3 72228139 72228364 -155296214 - MER112 DNA MER1_type -1 259 9 515 233 185 20 chr3 72228389 72228535 -155296043 - MER5A DNA MER1_type -10 179 10 219 36 0 0 chr3 72228762 72228790 -155295788 + (TG)n Simple_repeat Simple_repeat 1 28 0 226 239 15 15 chr3 72229815 72229882 -155294696 + (CATA)n Simple_repeat Simple_repeat 3 69 0 242 296 171 23 chr3 72230745 72230921 -155293657 + L1MC4 LINE L1 7529 7730 -312 28 48 0 0 chr3 72231015 72231057 -155293521 + AT_rich Low_complexity Low_complexity 1 42 0 502 307 90 5 chr3 72231382 72231571 -155293007 - MIR SINE MIR -56 206 2 258 105 0 0 chr3 72231753 72231791 -155292787 + (ATG)n Simple_repeat Simple_repeat 1 38 0 454 281 82 15 chr3 72231842 72231977 -155292601 - MIR SINE MIR -72 190 47 230 56 28 0 chr3 72235108 72235144 -155289434 + (TTAA)n Simple_repeat Simple_repeat 4 40 0 221 154 0 0 chr3 72235455 72235494 -155289084 + (CA)n Simple_repeat Simple_repeat 1 39 0 201 74 0 0 chr3 72236013 72236040 -155288538 + (GAAAA)n Simple_repeat Simple_repeat 1 27 0 204 40 0 0 chr3 72236154 72236179 -155288399 + (CA)n Simple_repeat Simple_repeat 2 26 0 204 40 0 0 chr3 72236497 72236522 -155288056 + (T)n Simple_repeat Simple_repeat 1 25 0 387 0 0 0 chr3 72237873 72237916 -155286662 + (TG)n Simple_repeat Simple_repeat 2 44 0 736 249 47 26 chr3 72239159 72239352 -155285226 + L2 LINE L2 3117 3313 0 300 305 0 59 chr3 72239496 72239614 -155284964 + MIR SINE MIR 106 216 -46 816 220 23 12 chr3 72240879 72241052 -155283526 - MER5B DNA MER1_type -3 175 1 431 284 24 31 chr3 72241060 72241187 -155283391 + MER5B DNA MER1_type 1 126 -52 24 67 0 0 chr3 72241213 72241258 -155283320 + AT_rich Low_complexity Low_complexity 1 45 0 532 298 39 11 chr3 72241335 72241348 -155283230 + MIR SINE MIR 6 17 -245 867 230 9 68 chr3 72241348 72241372 -155283206 + MER63A DNA MER1_type 2 26 -1662 2193 96 0 23 chr3 72241372 72241674 -155282904 - AluSq SINE Alu -17 296 2 867 230 9 68 chr3 72241674 72241871 -155282707 + MER63A DNA MER1_type 26 210 0 532 298 39 11 chr3 72241871 72242038 -155282540 + MIR SINE MIR 17 191 -71 428 253 40 0 chr3 72242325 72242424 -155282154 + MIR SINE MIR 46 148 -114 2719 108 16 8 chr3 72242619 72242989 -155281589 + THE1C LTR MaLR 3 375 0 435 163 12 12 chr3 72243129 72243209 -155281369 + MER116 DNA Mariner 1 80 0 484 315 14 0 chr3 72243507 72243650 -155280928 - MIR SINE MIR -25 237 93 21 0 0 0 chr3 72244087 72244108 -155280470 + AT_rich Low_complexity Low_complexity 1 21 0 302 147 80 13 chr3 72244461 72244536 -155280042 + MADE1 DNA Mariner 1 80 0 195 146 0 0 chr3 72244850 72244891 -155279687 + (A)n Simple_repeat Simple_repeat 1 41 0 799 217 27 33 chr3 72245588 72245772 -155278806 + MIR SINE MIR 5 187 -75 215 321 143 38 chr3 72246243 72246429 -155278149 + MIR3 SINE MIR 11 212 -50 229 263 75 12 chr3 72246603 72246683 -155277895 + L2 LINE L2 3167 3251 -62 2111 90 11 4 chr3 72247799 72248076 -155276502 - AluSx SINE Alu -33 279 1 341 330 186 21 chr3 72248077 72248410 -155276168 + L3 LINE CR1 1085 1472 -105 207 0 0 0 chr3 72248428 72248451 -155276127 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 216 0 0 0 chr3 72248961 72248985 -155275593 + (TG)n Simple_repeat Simple_repeat 2 25 0 339 248 175 0 chr3 72249020 72249157 -155275421 + MIR SINE MIR 13 173 -89 521 293 11 42 chr3 72249913 72250105 -155274473 - MIR SINE MIR -20 242 58 317 203 47 0 chr3 72251157 72251221 -155273357 + L2 LINE L2 3246 3312 -1 747 215 23 6 chr3 72251473 72251650 -155272928 - MER3 DNA MER1_type -29 180 1 437 280 124 68 chr3 72251871 72251992 -155272586 + HAL1 LINE L1 2180 2293 -214 1825 159 27 3 chr3 72251992 72252114 -155272464 + AluJo SINE Alu 1 119 -193 243 0 0 0 chr3 72252114 72252141 -155272437 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1825 159 27 3 chr3 72252141 72252313 -155272265 + AluJo SINE Alu 119 302 -10 437 280 124 68 chr3 72252313 72252498 -155272080 + HAL1 LINE L1 2293 2503 -4 470 235 8 66 chr3 72253539 72253695 -155270883 - MIR SINE MIR -60 148 3 340 228 13 0 chr3 72254844 72254923 -155269655 + MER116 DNA Mariner 1 80 0 885 255 17 4 chr3 72254943 72255174 -155269404 - MIR SINE MIR -1 261 28 271 370 0 17 chr3 72255424 72255543 -155269035 - L2 LINE L2 -10 3262 3146 381 22 0 0 chr3 72255719 72255765 -155268813 + (TG)n Simple_repeat Simple_repeat 2 47 0 1204 183 61 47 chr3 72256728 72257007 -155267571 + AluJo SINE Alu 6 288 -24 300 273 83 68 chr3 72257144 72257276 -155267302 - MIR SINE MIR -73 189 56 2371 84 0 0 chr3 72257705 72258004 -155266574 + AluSx SINE Alu 1 299 -13 326 269 67 25 chr3 72258008 72258127 -155266451 + MER5A DNA MER1_type 56 179 -10 773 226 41 20 chr3 72259234 72259429 -155265149 + MIR SINE MIR 2 200 -62 2108 12 0 4 chr3 72260369 72260613 -155263965 - L1PA4 LINE L1 -4 6151 5909 3083 258 97 40 chr3 72260672 72262072 -155262506 - L2 LINE L2 0 3313 1815 501 285 146 0 chr3 72262084 72262242 -155262336 + MER5A DNA MER1_type 9 189 0 333 206 24 103 chr3 72262255 72262381 -155262197 - L2 LINE L2 -1539 1775 1660 398 312 164 22 chr3 72263763 72264032 -155260546 - L2 LINE L2 -74 3239 2933 373 268 125 9 chr3 72265388 72265500 -155259078 + MER91C DNA MER1_type 16 140 0 1951 164 27 3 chr3 72265852 72266188 -155258390 + MER2 DNA MER2_type 1 344 0 540 231 0 9 chr3 72266343 72266451 -155258127 - MER81 DNA DNA -4 110 4 231 36 0 0 chr3 72268306 72268334 -155256244 + (TTG)n Simple_repeat Simple_repeat 2 29 0 251 270 0 14 chr3 72269071 72269145 -155255433 + CT-rich Low_complexity Low_complexity 2 74 0 653 269 60 36 chr3 72272688 72272937 -155251641 - MIR SINE MIR -5 257 3 428 240 29 10 chr3 72273061 72273165 -155251413 - L2 LINE L2 -9 3304 3199 316 352 105 0 chr3 72273465 72273627 -155250951 - MIR3 SINE MIR 0 208 30 225 94 0 0 chr3 72277509 72277541 -155247037 + (A)n Simple_repeat Simple_repeat 1 32 0 277 303 74 25 chr3 72278622 72278744 -155245834 + MIR SINE MIR 26 153 -109 271 323 93 30 chr3 72279089 72279281 -155245297 + MIR3 SINE MIR 15 211 -51 452 311 172 5 chr3 72279388 72279597 -155244981 + MIR SINE MIR 13 256 -6 318 50 0 0 chr3 72280001 72280041 -155244537 + (CA)n Simple_repeat Simple_repeat 1 40 0 666 273 99 8 chr3 72280082 72280312 -155244266 + MIR SINE MIR 8 252 -10 411 287 138 18 chr3 72280529 72280696 -155243882 - L2 LINE L2 -220 3052 2866 244 196 18 54 chr3 72280724 72280780 -155243798 - MIR3 SINE MIR -23 185 132 189 0 0 0 chr3 72281515 72281536 -155243042 + (GA)n Simple_repeat Simple_repeat 2 22 0 2274 102 0 7 chr3 72283577 72283882 -155240696 - AluSq SINE Alu -10 303 1 316 320 25 16 chr3 72284072 72284194 -155240384 + MIR3 SINE MIR 82 204 -4 23 54 0 0 chr3 72284259 72284296 -155240282 + AT_rich Low_complexity Low_complexity 1 37 0 645 357 12 8 chr3 72284298 72284550 -155240028 - MIR SINE MIR -1 261 9 851 208 58 6 chr3 72285319 72285492 -155239086 + MER20 DNA MER1_type 38 219 0 451 312 29 14 chr3 72285617 72285755 -155238823 - MER5A DNA MER1_type 0 189 50 589 262 67 0 chr3 72285810 72285974 -155238604 - MER5B DNA MER1_type -3 175 1 486 353 54 4 chr3 72286629 72286887 -155237691 + L2 LINE L2 2379 2649 -665 378 74 0 0 chr3 72287025 72287079 -155237499 + (CA)n Simple_repeat Simple_repeat 1 54 0 230 247 14 14 chr3 72290132 72290205 -155234373 - LTR67 LTR ERVL -25 532 460 196 268 143 0 chr3 72290263 72290319 -155234259 + MER5B DNA MER1_type 1 64 -114 1472 195 18 14 chr3 72290320 72290602 -155233976 + AluJb SINE Alu 1 283 -29 516 16 0 0 chr3 72290602 72290663 -155233915 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 783 201 67 11 chr3 72291544 72291723 -155232855 + MER5A DNA MER1_type 1 189 0 923 174 0 13 chr3 72292980 72293129 -155231449 + FRAM SINE Alu 6 152 -24 254 263 26 13 chr3 72293997 72294073 -155230505 - MER102a DNA MER1_type 0 330 254 405 273 43 25 chr3 72294111 72294272 -155230306 - MER102a DNA MER1_type -157 173 10 628 291 50 18 chr3 72295236 72295456 -155229122 - MIR SINE MIR -13 249 23 358 385 67 34 chr3 72300855 72301182 -155223396 - L2 LINE L2 0 3272 2935 596 247 157 22 chr3 72301205 72301428 -155223150 - MIR SINE MIR 0 262 10 345 131 36 24 chr3 72302482 72302566 -155222012 + (TAGA)n Simple_repeat Simple_repeat 1 85 0 248 50 75 0 chr3 72302584 72302624 -155221954 + GA-rich Low_complexity Low_complexity 4 46 0 182 208 21 0 chr3 72302623 72302671 -155221907 + (TGGG)n Simple_repeat Simple_repeat 1 49 0 * 314 308 108 0 chr3 72302706 72302836 -155221742 - MIR SINE MIR -29 233 90 1901 171 40 3 chr3 72303438 72303737 -155220841 - AluSx SINE Alu -2 310 1 295 224 200 0 chr3 72303996 72304081 -155220497 - MIR SINE MIR -14 248 147 308 181 0 3 chr3 72304081 72304196 -155220382 - MER104 DNA Tc2 0 180 35 401 323 0 24 chr3 72304237 72304364 -155220214 - MIR SINE MIR -134 128 5 510 250 12 25 chr3 72304755 72304915 -155219663 + MIR SINE MIR 105 262 0 364 229 129 35 chr3 72305002 72305172 -155219406 - MER5A DNA MER1_type 0 189 4 318 369 10 50 chr3 72305234 72305432 -155219146 - L2 LINE L2 -10 3262 3073 544 297 126 40 chr3 72305701 72306145 -155218433 - MLT1K LTR MaLR -42 546 65 231 214 0 0 chr3 72306303 72306359 -155218219 + (TTAAA)n Simple_repeat Simple_repeat 1 56 0 2325 91 0 0 chr3 72306361 72306659 -155217919 - AluSg SINE Alu -12 298 1 195 279 49 0 chr3 72306887 72306948 -155217630 - L2 LINE L2 -9 3304 3241 392 309 57 34 chr3 72307100 72307275 -155217303 - L2 LINE L2 -555 2759 2581 390 307 0 43 chr3 72309407 72309547 -155215031 - MIR3 SINE MIR -61 147 14 210 150 0 25 chr3 72311223 72311263 -155213315 + (TG)n Simple_repeat Simple_repeat 2 40 0 2227 114 0 9 chr3 72312311 72312627 -155211951 + AluSq SINE Alu 1 313 0 302 278 239 15 chr3 72315999 72316204 -155208374 + MIR SINE MIR 9 259 -3 626 277 12 12 chr3 72316364 72316530 -155208048 + MER5B DNA MER1_type 6 171 -7 221 81 0 27 chr3 72316670 72316707 -155207871 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 215 254 16 16 chr3 72317044 72317107 -155207471 + (TATATG)n Simple_repeat Simple_repeat 2 64 0 1799 89 92 72 chr3 72317795 72318088 -155206490 + AluSq SINE Alu 1 299 -14 183 42 0 0 chr3 72318156 72318180 -155206398 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 408 20 0 0 chr3 72321172 72321221 -155203357 + (TG)n Simple_repeat Simple_repeat 2 50 0 923 180 29 0 chr3 72321791 72321963 -155202615 - MER58A DNA MER1_type -2 222 46 258 32 0 0 chr3 72322424 72322455 -155202123 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2443 67 0 0 chr3 72323298 72323598 -155200980 + AluY SINE Alu 1 300 -11 1785 158 18 3 chr3 72323968 72324252 -155200326 + AluJo SINE Alu 1 288 -24 261 0 0 0 chr3 72324259 72324288 -155200290 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 339 303 11 90 chr3 72325467 72325638 -155198940 - L3 LINE CR1 -24 1553 1397 2223 180 28 47 chr3 72325638 72326133 -155198445 + MER66B LTR ERV1 1 486 0 339 303 11 90 chr3 72326133 72326149 -155198429 - L3 LINE CR1 -180 1397 1381 2395 76 3 0 chr3 72326291 72326593 -155197985 - AluY SINE Alu -8 303 1 285 229 54 169 chr3 72326772 72326938 -155197640 + MIR3 SINE MIR 47 193 -15 418 225 0 0 chr3 72326977 72327057 -155197521 + L2 LINE L2 3190 3269 -3 445 216 0 0 chr3 72327612 72327709 -155196869 + MER106B DNA MER1_type 896 992 -67 288 312 0 0 chr3 72329370 72329463 -155195115 + C-rich Low_complexity Low_complexity 1 93 0 451 229 64 29 chr3 72329937 72330077 -155194501 - L1ME3A LINE L1 -53 6117 5973 21 0 0 0 chr3 72331450 72331471 -155193107 + AT_rich Low_complexity Low_complexity 1 21 0 323 336 64 0 chr3 72334724 72334834 -155189744 + L2 LINE L2 3197 3313 0 446 297 0 0 chr3 72335190 72335301 -155189277 - L2 LINE L2 0 3272 3162 260 342 0 45 chr3 72336169 72336280 -155188298 + L2 LINE L2 3157 3262 -10 213 248 168 71 chr3 72336613 72336726 -155187852 - L2 LINE L2 0 3272 3149 249 33 0 0 chr3 72337147 72337177 -155187401 + (T)n Simple_repeat Simple_repeat 1 30 0 186 43 0 0 chr3 72339052 72339075 -155185503 + (A)n Simple_repeat Simple_repeat 1 23 0 795 225 32 21 chr3 72339669 72339856 -155184722 - MER5A DNA MER1_type 0 189 1 371 302 69 0 chr3 72339924 72340040 -155184538 + MIR SINE MIR 20 143 -65 1724 173 41 3 chr3 72340395 72340737 -155183841 - L1MB7 LINE L1 -19 6165 5811 1017 168 11 34 chr3 72340740 72341002 -155183576 - L1MB7 LINE L1 -768 5378 5123 2191 87 14 7 chr3 72342954 72343241 -155181337 + AluSc SINE Alu 1 289 -20 335 222 133 0 chr3 72343657 72343747 -155180831 - L1ME2 LINE L1 -7 6157 6056 196 214 11 146 chr3 72345089 72345178 -155179400 - MIR SINE MIR -67 141 83 24 0 0 0 chr3 72345346 72345370 -155179208 + AT_rich Low_complexity Low_complexity 1 24 0 641 283 127 21 chr3 72347770 72348053 -155176525 + MER102b DNA MER1_type 29 341 0 442 279 66 40 chr3 72348469 72348695 -155175883 + MIR SINE MIR 31 262 0 392 224 164 8 chr3 72349002 72349136 -155175442 - MIR3 SINE MIR -13 195 41 659 295 96 22 chr3 72350792 72351158 -155173420 - L2 LINE L2 0 3313 2921 332 273 67 33 chr3 72351335 72351485 -155173093 + MIR3 SINE MIR 19 173 -35 294 278 106 13 chr3 72351513 72351664 -155172914 - MIR SINE MIR -13 249 85 526 266 104 6 chr3 72352478 72352651 -155171927 - MIR SINE MIR 0 262 73 335 336 127 66 chr3 72352932 72353372 -155171206 - L2 LINE L2 -2 3270 2804 2113 116 0 0 chr3 72353997 72354274 -155170304 + AluSx SINE Alu 29 305 -7 329 252 86 40 chr3 72354440 72354591 -155169987 + MIR SINE MIR 92 249 -13 3371 53 12 0 chr3 72354666 72355084 -155169494 - L1PA7 LINE L1 -1 6153 5731 446 238 63 0 chr3 72355423 72355549 -155169029 + MIR SINE MIR 59 192 -70 543 253 34 34 chr3 72355798 72355944 -155168634 - MER63A DNA MER1_type 0 210 65 1487 257 41 22 chr3 72356062 72356572 -155168006 - MER113 DNA MER1_type? -1 520 1 275 253 157 0 chr3 72356578 72356661 -155167917 - MIR3 SINE MIR -54 154 59 430 288 91 49 chr3 72357225 72357468 -155167110 + MIR SINE MIR 8 260 -2 181 288 30 0 chr3 72359375 72359441 -155165137 + L2 LINE L2 2933 3000 -313 205 324 5 54 chr3 72359834 72360019 -155164559 + GA-rich Low_complexity Low_complexity 5 180 0 351 0 0 0 chr3 72360253 72360292 -155164286 + (CA)n Simple_repeat Simple_repeat 1 39 0 246 315 0 22 chr3 72360495 72360587 -155163991 + L2 LINE L2 3173 3262 -10 802 263 13 4 chr3 72360840 72361068 -155163510 + MIR SINE MIR 32 261 -1 368 228 13 0 chr3 72361088 72361167 -155163411 - MER116 DNA Mariner 0 80 1 2300 105 3 0 chr3 72363146 72363441 -155161137 - AluSp SINE Alu -17 296 1 22 0 0 0 chr3 72363616 72363638 -155160940 + AT_rich Low_complexity Low_complexity 1 22 0 2253 117 0 0 chr3 72364446 72364746 -155159832 + AluSg SINE Alu 1 300 -10 1631 158 10 59 chr3 72364914 72365217 -155159361 - AluJb SINE Alu -24 288 1 250 365 36 7 chr3 72365981 72366118 -155158460 + MIR SINE MIR 20 160 -102 752 206 0 0 chr3 72366155 72366281 -155158297 - FLAM_C SINE Alu -16 127 2 1250 243 109 61 chr3 72366287 72366809 -155157769 + MLT1K LTR MaLR 1 547 -41 2641 104 5 3 chr3 72367194 72367569 -155157009 - L1PB1 LINE L1 -3 6148 5773 274 219 13 40 chr3 72367627 72367654 -155156924 + MIR SINE MIR 32 58 -150 2312 102 0 0 chr3 72367654 72367948 -155156630 - AluY SINE Alu -17 294 1 274 219 13 40 chr3 72367948 72368029 -155156549 + MIR SINE MIR 58 131 -77 2225 129 0 0 chr3 72368255 72368550 -155156028 - AluSg SINE Alu -13 297 3 25 0 0 0 chr3 72368574 72368599 -155155979 + AT_rich Low_complexity Low_complexity 1 25 0 465 262 14 14 chr3 72369082 72369223 -155155355 + MER5A DNA MER1_type 1 141 -48 337 256 58 22 chr3 72369115 72369252 -155155326 - MER5A DNA MER1_type -22 167 26 * 222 292 73 10 chr3 72370323 72370419 -155154159 + MIR SINE MIR 23 124 -84 2073 121 13 0 chr3 72371215 72371521 -155153057 - AluSx SINE Alu 0 312 3 254 292 46 0 chr3 72371577 72371642 -155152936 + MLT1K LTR MaLR 2 69 -519 2159 198 34 81 chr3 72371843 72372424 -155152154 + MLT2B3 LTR ERVL 1 554 0 2260 108 0 3 chr3 72372753 72373049 -155151529 - AluSq SINE Alu -17 296 2 23 68 0 0 chr3 72374258 72374302 -155150276 + AT_rich Low_complexity Low_complexity 1 44 0 595 209 127 0 chr3 72374323 72374457 -155150121 + L1ME3 LINE L1 6011 6161 -1 21 57 0 0 chr3 72375117 72375152 -155149426 + AT_rich Low_complexity Low_complexity 1 35 0 1823 160 3 3 chr3 72375218 72375512 -155149066 - AluSp SINE Alu -18 295 2 221 332 56 47 chr3 72375855 72376069 -155148509 + L2 LINE L2 2424 2639 -675 404 215 92 8 chr3 72376205 72376335 -155148243 + MER113 DNA MER1_type? 9 149 -372 1111 230 54 74 chr3 72376395 72376532 -155148046 + MER2 DNA MER2_type 1 139 -206 2224 124 0 0 chr3 72376532 72376831 -155147747 - AluSx SINE Alu -13 299 1 1111 230 54 74 chr3 72376831 72377045 -155147533 + MER2 DNA MER2_type 139 345 0 413 305 84 14 chr3 72377679 72377892 -155146686 + L2 LINE L2 2491 2718 -596 506 264 19 60 chr3 72377904 72378120 -155146458 - L2 LINE L2 -544 2770 2564 499 284 105 0 chr3 72378329 72378519 -155146059 + MIR SINE MIR 53 262 0 556 196 57 44 chr3 72379033 72379191 -155145387 + MIR SINE MIR 82 241 -21 451 285 16 8 chr3 72379213 72379336 -155145242 - MIR SINE MIR -108 154 31 610 254 90 20 chr3 72379878 72380122 -155144456 + MIR SINE MIR 2 262 0 2000 156 3 0 chr3 72380164 72380466 -155144112 + AluSx SINE Alu 8 310 -2 620 94 31 10 chr3 72380930 72381026 -155143552 - L1MA8 LINE L1 -150 6141 6044 709 273 48 5 chr3 72381299 72381486 -155143092 - MIR SINE MIR -28 234 40 1410 229 41 71 chr3 72381506 72381977 -155142601 + L1MEc LINE L1 2099 2517 -3698 2526 73 0 0 chr3 72381977 72382280 -155142298 + AluY SINE Alu 1 303 -8 1410 229 41 71 chr3 72382280 72382482 -155142096 + L1MEc LINE L1 2517 2724 -3491 210 288 100 0 chr3 72382881 72382961 -155141617 + MIR SINE MIR 60 147 -115 952 269 177 16 chr3 72382975 72383659 -155140919 - L2 LINE L2 0 3313 2501 501 181 0 0 chr3 72383659 72383742 -155140836 + AluJo SINE Alu 2 84 -228 4177 41 2 8 chr3 72383742 72384251 -155140327 + L1PA3 LINE L1 5650 6155 0 409 276 0 0 chr3 72384255 72384378 -155140200 + L1M4c LINE L1 1471 1593 -4791 260 365 16 8 chr3 72384490 72384616 -155139962 - MER5A DNA MER1_type 0 189 63 23 0 0 0 chr3 72385092 72385115 -155139463 + AT_rich Low_complexity Low_complexity 1 23 0 1393 147 13 30 chr3 72385115 72385346 -155139232 + AluJo SINE Alu 73 299 -13 257 264 23 0 chr3 72385351 72385438 -155139140 - L2 LINE L2 -826 2488 2400 1834 166 0 0 chr3 72385812 72386101 -155138477 + AluJb SINE Alu 1 289 -23 201 260 117 0 chr3 72386591 72386668 -155137910 + MIR SINE MIR 139 224 -38 321 68 0 0 chr3 72386797 72386841 -155137737 + (TC)n Simple_repeat Simple_repeat 2 45 0 2324 106 0 7 chr3 72387654 72387955 -155136623 - AluSx SINE Alu -13 299 1 198 328 0 0 chr3 72389432 72389496 -155135082 - MIR SINE MIR -62 146 83 246 246 71 44 chr3 72390366 72390549 -155134029 - Charlie7 DNA MER1_type -15 2597 2410 * 1548 263 35 13 chr3 72390530 72390987 -155133591 - Charlie7 DNA MER1_type -1885 727 261 837 260 116 36 chr3 72392128 72392566 -155132012 + L1MC4a LINE L1 5495 5967 -1841 255 324 7 15 chr3 72393208 72393344 -155131234 + MIR SINE MIR 97 231 -31 2070 134 3 3 chr3 72393558 72393857 -155130721 + AluSx SINE Alu 1 299 -13 2398 89 0 10 chr3 72394495 72394808 -155129770 - AluSq SINE Alu -3 310 1 320 321 68 68 chr3 72394832 72395246 -155129332 - L2 LINE L2 -50 3222 2809 826 273 33 33 chr3 72395370 72395674 -155128904 + MER20B DNA MER1_type 3 306 -477 724 234 148 33 chr3 72395744 72396047 -155128531 + MER20B DNA MER1_type 446 783 0 330 304 26 9 chr3 72396055 72396170 -155128408 - MIR SINE MIR -92 170 54 624 301 194 11 chr3 72397267 72397649 -155126929 + L2 LINE L2 2861 3312 -1 32 0 0 0 chr3 72397771 72397803 -155126775 + AT_rich Low_complexity Low_complexity 1 32 0 2790 19 0 0 chr3 72397772 72398111 -155126467 - AluYa5 SINE Alu 0 339 1 328 224 0 0 chr3 72398117 72398193 -155126385 - L1ME LINE L1 -298 5823 5748 652 173 0 9 chr3 72398210 72398320 -155126258 - FLAM_A SINE Alu -6 136 28 380 258 129 57 chr3 72398445 72398693 -155125885 - L1ME LINE L1 -509 5612 5347 380 319 53 0 chr3 72399019 72399147 -155125431 + MIR SINE MIR 10 145 -63 1596 96 10 86 chr3 72399291 72399338 -155125240 - L1MA5 LINE L1 -1 6299 6250 3296 79 27 20 chr3 72399338 72399739 -155124839 + MLT2A1 LTR ERVL 1 407 -37 315 0 0 0 chr3 72399739 72399774 -155124804 + (CA)n Simple_repeat Simple_repeat 2 36 0 3296 79 27 20 chr3 72399774 72399813 -155124765 + MLT2A1 LTR ERVL 407 444 0 1596 96 10 86 chr3 72399813 72399831 -155124747 - L1MA5 LINE L1 -50 6250 6232 2283 88 10 7 chr3 72399831 72400127 -155124451 - AluSq SINE Alu -16 297 1 1596 96 10 86 chr3 72400127 72400351 -155124227 - L1MA5 LINE L1 -68 6232 6031 258 329 77 27 chr3 72400372 72400594 -155123984 - MIR SINE MIR -11 251 19 1383 174 79 56 chr3 72400701 72401006 -155123572 + AluJo SINE Alu 1 312 0 483 140 0 207 chr3 72401544 72401694 -155122884 - MER45 DNA AcHobo 0 1581 1463 869 243 33 0 chr3 72401696 72401877 -155122701 - MER45 DNA AcHobo -1394 187 1 393 248 49 112 chr3 72402156 72402417 -155122161 - MIR SINE MIR -3 259 14 304 244 0 22 chr3 72402941 72403031 -155121547 - MIR SINE MIR 0 262 175 214 362 0 0 chr3 72403035 72403104 -155121474 - MIR SINE MIR -193 69 1 468 54 96 18 chr3 72403116 72403283 -155121295 + (TA)n Simple_repeat Simple_repeat 1 180 0 22 0 0 0 chr3 72403283 72403305 -155121273 + AT_rich Low_complexity Low_complexity 1 22 0 425 8 109 31 chr3 72403455 72403583 -155120995 + (TA)n Simple_repeat Simple_repeat 1 138 0 366 331 32 39 chr3 72404249 72404403 -155120175 - L2 LINE L2 -5 3267 3115 230 175 0 0 chr3 72404411 72404451 -155120127 + MIR SINE MIR 115 154 -108 797 174 0 0 chr3 72404479 72404600 -155119978 + FLAM_A SINE Alu 4 124 -9 180 338 14 0 chr3 72404648 72404722 -155119856 + MIR SINE MIR 188 262 0 1377 208 47 0 chr3 72404736 72405053 -155119525 + MER58B DNA MER1_type 1 341 0 397 236 35 49 chr3 72406368 72406512 -155118066 + L2 LINE L2 2292 2433 -881 312 291 177 13 chr3 72406700 72406858 -155117720 + L2 LINE L2 3128 3311 -2 362 384 0 0 chr3 72406996 72407108 -155117470 + L2 LINE L2 3197 3308 -5 242 283 141 11 chr3 72407148 72407240 -155117338 + MIR SINE MIR 42 145 -63 1219 159 61 43 chr3 72407274 72407473 -155117105 - L1MCa LINE L1 -5368 1058 851 2403 65 0 10 chr3 72407473 72407767 -155116811 - AluY SINE Alu -20 291 1 1219 159 61 43 chr3 72407767 72407844 -155116734 - L1MCa LINE L1 -5575 851 777 * 1346 165 13 4 chr3 72407843 72408080 -155116498 - L1MCa LINE L1 -6167 259 21 180 346 49 0 chr3 72408926 72409007 -155115571 - MIR3 SINE MIR -21 187 103 367 318 9 0 chr3 72409029 72409136 -155115442 + MIR SINE MIR 66 173 -89 479 292 65 16 chr3 72409209 72409394 -155115184 + MIR SINE MIR 8 201 -61 3084 132 5 0 chr3 72409847 72410273 -155114305 + MSTC LTR MaLR 1 428 0 318 346 77 43 chr3 72410285 72410519 -155114059 + MLT1I LTR MaLR 65 306 -103 503 199 6 127 chr3 72410525 72410691 -155113887 + MLT1H LTR MaLR 404 549 0 1608 180 21 0 chr3 72411927 72412216 -155112362 - AluJb SINE Alu -17 295 1 757 238 51 38 chr3 72413140 72413375 -155111203 + MIR SINE MIR 14 251 -11 1790 159 10 19 chr3 72413445 72413759 -155110819 + AluJb SINE Alu 1 311 -1 2008 150 16 0 chr3 72413809 72414188 -155110390 - AluSx SINE Alu 0 384 1 344 220 114 8 chr3 72414368 72414500 -155110078 + L2 LINE L2 2025 2170 -1144 1000 133 48 76 chr3 72414529 72414739 -155109839 + MER20 DNA MER1_type 16 219 0 2075 286 56 19 chr3 72414759 72415710 -155108868 + L2 LINE L2 2317 3309 -4 368 238 101 85 chr3 72415791 72415980 -155108598 + MIR SINE MIR 56 247 -15 466 282 124 55 chr3 72416463 72416754 -155107824 - L2 LINE L2 0 3313 3003 659 229 49 0 chr3 72417066 72417210 -155107368 + MER103 DNA DNA 15 165 -1 715 269 17 0 chr3 72417764 72417939 -155106639 - MIR SINE MIR -13 249 72 566 262 33 27 chr3 72418463 72418646 -155105932 + MIR SINE MIR 71 254 -8 221 250 0 17 chr3 72419066 72419126 -155105452 - MIR SINE MIR -21 241 183 292 324 45 56 chr3 72420274 72420453 -155104125 - MIR SINE MIR -2 260 84 1271 291 44 8 chr3 72421661 72422025 -155102553 + MLT1K LTR MaLR 179 555 -33 722 180 47 0 chr3 72422026 72422154 -155102424 + L1PA16 LINE L1 6031 6164 -2 262 312 129 0 chr3 72422471 72422564 -155102014 - L2 LINE L2 -18 3254 3150 924 263 14 0 chr3 72422629 72422842 -155101736 + MER58A DNA MER1_type 9 224 0 492 316 23 6 chr3 72423896 72424067 -155100511 - MIR SINE MIR -11 251 78 696 330 30 9 chr3 72424088 72424318 -155100260 - MIR SINE MIR 0 262 28 406 265 206 6 chr3 72424549 72424719 -155099859 + MIR3 SINE MIR 4 207 -1 21 36 0 0 chr3 72425115 72425143 -155099435 + AT_rich Low_complexity Low_complexity 1 28 0 1974 130 7 0 chr3 72425230 72425522 -155099056 - L1PA13 LINE L1 -7 6156 5863 282 230 95 0 chr3 72425923 72425997 -155098581 - L2 LINE L2 -13 3300 3220 425 145 17 128 chr3 72427511 72427628 -155096950 + MER20 DNA MER1_type 4 107 -112 528 213 0 9 chr3 72427699 72427807 -155096771 + MER20 DNA MER1_type 113 219 0 22 0 0 0 chr3 72428126 72428148 -155096430 + AT_rich Low_complexity Low_complexity 1 22 0 197 163 116 0 chr3 72428222 72428265 -155096313 + L2 LINE L2 1361 1408 -1906 341 273 34 11 chr3 72428335 72428423 -155096155 + MIR SINE MIR 93 182 -80 270 193 0 18 chr3 72428519 72428576 -155096002 + MLT1K LTR MaLR 187 242 -346 906 114 8 0 chr3 72428623 72428755 -155095823 - L1PA12 LINE L1 -5687 1894 1762 485 61 30 0 chr3 72428755 72428821 -155095757 + L1PA13 LINE L1 6087 6154 -9 333 68 0 0 chr3 72429021 72429065 -155095513 + (CA)n Simple_repeat Simple_repeat 1 44 0 869 241 208 23 chr3 72430132 72430531 -155094047 - MER113 DNA MER1_type? -43 478 6 279 0 0 0 chr3 72430770 72430801 -155093777 + (TG)n Simple_repeat Simple_repeat 2 32 0 2212 124 0 0 chr3 72432265 72432564 -155092014 - AluSc SINE Alu -10 299 1 317 276 35 0 chr3 72432607 72432694 -155091884 + L2 LINE L2 2564 2653 -661 1474 217 54 11 chr3 72432744 72433113 -155091465 - L1MB7 LINE L1 0 6184 5800 760 329 61 60 chr3 72433244 72433834 -155090744 + L2 LINE L2 2716 3311 -2 1605 166 10 55 chr3 72433980 72434288 -155090290 - AluSx SINE Alu -12 300 7 24 32 0 0 chr3 72434638 72434669 -155089909 + AT_rich Low_complexity Low_complexity 1 31 0 285 75 0 0 chr3 72434749 72434789 -155089789 + (CA)n Simple_repeat Simple_repeat 2 41 0 343 161 310 11 chr3 72435599 72435686 -155088892 + MER81 DNA DNA 2 114 0 378 257 118 0 chr3 72435845 72435981 -155088597 + L1ME4a LINE L1 5967 6118 -3 21 0 0 0 chr3 72435982 72436003 -155088575 + AT_rich Low_complexity Low_complexity 1 21 0 492 303 168 26 chr3 72436835 72437326 -155087252 + L2 LINE L2 2518 3086 -227 348 244 31 63 chr3 72438407 72438534 -155086044 + L2 LINE L2 3172 3294 -19 377 310 69 30 chr3 72439759 72439962 -155084616 - MIR SINE MIR -44 218 8 183 333 28 28 chr3 72440037 72440145 -155084433 + MER5A DNA MER1_type 79 186 -3 556 299 95 9 chr3 72440733 72440954 -155083624 - MIR SINE MIR -13 249 10 629 335 50 6 chr3 72441354 72441598 -155082980 + MIR SINE MIR 3 262 0 249 33 0 0 chr3 72441717 72441747 -155082831 + (TA)n Simple_repeat Simple_repeat 1 30 0 303 234 196 9 chr3 72441770 72441877 -155082701 - MIR SINE MIR -134 128 2 224 305 53 11 chr3 72443155 72443250 -155081328 + L2 LINE L2 3203 3301 -12 448 322 56 20 chr3 72443299 72443604 -155080974 + L2 LINE L2 2698 3012 -301 354 243 92 46 chr3 72443632 72443784 -155080794 + L2 LINE L2 3152 3310 -3 1077 256 30 31 chr3 72444615 72445086 -155079492 + MER113 DNA MER1_type? 7 514 -7 243 297 104 45 chr3 72446691 72446893 -155077685 - L2 LINE L2 -610 2704 2491 256 365 157 6 chr3 72447071 72447389 -155077189 - L2 LINE L2 -78 3194 2829 225 284 75 0 chr3 72447450 72447517 -155077061 - MER113 DNA MER1_type? -4 517 446 1109 204 74 97 chr3 72447527 72447741 -155076837 - MER2 DNA MER2_type 0 344 140 2207 124 0 0 chr3 72447741 72448040 -155076538 + AluSx SINE Alu 1 299 -13 1109 204 74 97 chr3 72448040 72448177 -155076401 - MER2 DNA MER2_type -204 140 1 418 215 92 8 chr3 72448237 72448367 -155076211 - MER113 DNA MER1_type? -372 149 9 277 332 56 47 chr3 72448503 72448717 -155075861 - L2 LINE L2 -675 2639 2424 2322 95 3 0 chr3 72449060 72449355 -155075223 + AluSp SINE Alu 2 297 -16 21 57 0 0 chr3 72449419 72449454 -155075124 + AT_rich Low_complexity Low_complexity 1 35 0 601 209 127 0 chr3 72450114 72450248 -155074330 - L1ME3 LINE L1 -1 6161 6011 23 68 0 0 chr3 72450269 72450313 -155074265 + AT_rich Low_complexity Low_complexity 1 44 0 181 277 21 0 chr3 72451291 72451338 -155073240 + L3 LINE CR1 1525 1572 -5 1970 137 0 7 chr3 72451523 72451877 -155072701 + AluJb SINE Alu 2 353 0 523 298 64 0 chr3 72452080 72452251 -155072327 - MER117 DNA MER1_type -1 196 15 430 295 170 46 chr3 72453310 72453883 -155070695 + L2 LINE L2 2593 3222 -50 1638 135 12 4 chr3 72453988 72454240 -155070338 + L1PB1 LINE L1 5896 6149 -2 236 208 21 0 chr3 72454934 72454982 -155069596 - Charlie8 DNA MER1_type -1000 1417 1369 2153 107 0 32 chr3 72455047 72455357 -155069221 - AluSx SINE Alu -12 300 1 490 223 58 53 chr3 72455527 72455715 -155068863 - Charlie8 DNA MER1_type -2156 261 73 335 199 34 209 chr3 72456144 72456201 -155068377 + MIR SINE MIR 21 86 -176 1005 209 11 16 chr3 72456201 72456388 -155068190 - MER5A DNA MER1_type -3 186 1 335 199 34 209 chr3 72456388 72456542 -155068036 + MIR SINE MIR 86 205 -57 472 275 170 32 chr3 72456592 72456810 -155067768 + MIR SINE MIR 9 256 -6 1692 189 0 31 chr3 72457285 72457603 -155066975 + AluJb SINE Alu 1 308 -4 279 273 11 34 chr3 72458083 72458171 -155066407 - MER5A DNA MER1_type -1 188 103 2512 223 69 3 chr3 72458175 72458430 -155066148 - L1MB7 LINE L1 -9 6175 5938 1699 143 59 42 chr3 72458430 72458737 -155065841 - AluJo SINE Alu 0 312 1 2512 223 69 3 chr3 72458737 72459078 -155065500 - L1MB7 LINE L1 -246 5938 5540 270 269 13 13 chr3 72459078 72459156 -155065422 - MER5A DNA MER1_type -74 115 38 192 330 82 10 chr3 72459080 72459177 -155065401 + MER5A DNA MER1_type 85 188 -1 * 551 200 153 47 chr3 72460786 72460976 -155063602 - MLT1K LTR MaLR -13 575 366 216 0 0 0 chr3 72461285 72461309 -155063269 + (A)n Simple_repeat Simple_repeat 1 24 0 279 296 0 0 chr3 72461522 72461593 -155062985 + GA-rich Low_complexity Low_complexity 4 74 0 237 132 0 0 chr3 72461594 72461632 -155062946 + (GAAAA)n Simple_repeat Simple_repeat 2 39 0 2059 165 40 11 chr3 72462042 72462393 -155062185 + MLT1A1 LTR MaLR 5 365 0 332 339 94 24 chr3 72462440 72462567 -155062011 + L2 LINE L2 3137 3272 0 373 301 128 53 chr3 72463071 72463337 -155061241 - L2 LINE L2 -6 3266 2981 492 269 113 6 chr3 72464890 72465050 -155059528 + MIR SINE MIR 56 232 -30 439 258 40 40 chr3 72465168 72465319 -155059259 - MIR SINE MIR -12 250 100 691 226 38 17 chr3 72467331 72467540 -155057038 + MIR SINE MIR 1 262 0 226 195 0 117 chr3 72467655 72467732 -155056846 + MLT1K LTR MaLR 181 248 -340 232 250 18 0 chr3 72467907 72467963 -155056615 + MLT1K LTR MaLR 516 572 -16 374 248 93 101 chr3 72468266 72468673 -155055905 - MLT1K LTR MaLR -46 542 139 442 182 140 28 chr3 72469617 72469760 -155054818 - MER96B DNA MER1_type? -219 198 40 418 282 46 23 chr3 72469846 72469977 -155054601 + MIR SINE MIR 118 251 -11 634 330 85 72 chr3 72470049 72470990 -155053588 - L2 LINE L2 -71 3201 2246 231 292 0 28 chr3 72471774 72471846 -155052732 - MER117 DNA MER1_type -127 70 1 185 229 33 49 chr3 72471893 72471954 -155052624 + MIR SINE MIR 86 145 -117 490 238 24 0 chr3 72472003 72472129 -155052449 - MER58A DNA MER1_type -1 223 95 251 288 45 0 chr3 72472161 72472227 -155052351 - MER58A DNA MER1_type -9 98 30 180 0 0 0 chr3 72472496 72472516 -155052062 + (A)n Simple_repeat Simple_repeat 1 20 0 232 304 0 0 chr3 72472835 72472891 -155051687 - MER103 DNA DNA -81 85 30 2044 135 3 3 chr3 72472893 72473190 -155051388 - AluSg SINE Alu -13 297 1 211 271 250 0 chr3 72473820 72473916 -155050662 - L2 LINE L2 0 3313 3194 365 253 76 24 chr3 72474239 72474401 -155050177 - MIR SINE MIR -62 146 12 758 228 58 5 chr3 72474637 72474826 -155049752 + MIR SINE MIR 58 256 -6 308 287 79 10 chr3 72475768 72475869 -155048709 + MIR SINE MIR 84 191 -71 481 263 38 86 chr3 72475893 72476102 -155048476 + MIR SINE MIR 35 233 -29 293 296 63 28 chr3 72476211 72476353 -155048225 + MIR3 SINE MIR 5 151 -57 449 346 55 68 chr3 72477221 72477660 -155046918 + L2 LINE L2 2808 3240 -32 334 306 48 32 chr3 72477743 72477867 -155046711 - MIR3 SINE MIR -82 126 1 587 254 18 88 chr3 72478489 72478717 -155045861 + MIR SINE MIR 43 254 -8 296 314 10 10 chr3 72478909 72479011 -155045567 + MIR SINE MIR 20 121 -141 535 314 13 44 chr3 72479842 72480071 -155044507 + MIR SINE MIR 2 223 -39 652 250 17 39 chr3 72480521 72480644 -155043934 + MER5B DNA MER1_type 2 121 -57 2125 100 0 62 chr3 72480644 72480964 -155043614 - AluSc SINE Alu -9 300 1 652 250 17 39 chr3 72480964 72481020 -155043558 + MER5B DNA MER1_type 121 177 -1 692 256 54 12 chr3 72481029 72481197 -155043381 - MER5A DNA MER1_type 0 189 15 431 303 72 81 chr3 72481243 72481525 -155043053 + L2 LINE L2 2694 2968 -304 1597 179 33 0 chr3 72481525 72481799 -155042779 - AluJo SINE Alu -29 283 1 431 303 72 81 chr3 72481799 72482030 -155042548 + L2 LINE L2 2968 3199 -73 229 309 27 36 chr3 72482084 72482194 -155042384 + MIR SINE MIR 136 244 -18 187 274 0 0 chr3 72482338 72482389 -155042189 + MIR SINE MIR 104 154 -108 221 343 27 0 chr3 72482399 72482472 -155042106 - L2 LINE L2 -7 3265 3191 21 0 0 0 chr3 72482545 72482566 -155042012 + AT_rich Low_complexity Low_complexity 1 21 0 209 278 19 0 chr3 72482997 72483051 -155041527 + (TG)n Simple_repeat Simple_repeat 2 56 0 23 33 0 0 chr3 72483812 72483842 -155040736 + AT_rich Low_complexity Low_complexity 1 30 0 489 226 84 111 chr3 72483847 72484057 -155040521 - MLT1I LTR MaLR -3 418 232 22 35 0 0 chr3 72484153 72484182 -155040396 + AT_rich Low_complexity Low_complexity 1 29 0 233 254 18 0 chr3 72485164 72485219 -155039359 + L2 LINE L2 3214 3269 -3 200 167 19 19 chr3 72486162 72486216 -155038362 + A-rich Low_complexity Low_complexity 1 54 0 1117 194 15 0 chr3 72486320 72486521 -155038057 + MER20 DNA MER1_type 16 219 0 1133 99 0 0 chr3 72488356 72488508 -155036070 + AluSc SINE Alu 155 306 -3 3000 117 67 0 chr3 72488692 72489128 -155035450 + MER4C LTR ERV1 1 465 0 245 309 165 10 chr3 72489129 72489226 -155035352 - L2 LINE L2 0 3272 3161 972 213 41 5 chr3 72489521 72489718 -155034860 + MER3 DNA MER1_type 6 209 0 876 238 49 6 chr3 72489727 72489935 -155034643 - MIR SINE MIR -49 213 1 1240 139 0 0 chr3 72490973 72491153 -155033425 - AluJ SINE Alu -4 308 129 1700 77 9 14 chr3 72491210 72491432 -155033146 - L1PB1 LINE L1 -2 6149 5929 891 139 0 35 chr3 72491432 72491576 -155033002 - AluJ SINE Alu -171 141 3 551 278 23 45 chr3 72491588 72491764 -155032814 - MER5B DNA MER1_type -6 172 1 1183 171 0 60 chr3 72491775 72491819 -155032759 + MER58A DNA MER1_type 20 65 -2355 1847 143 43 0 chr3 72491819 72492099 -155032479 - AluSq SINE Alu -21 292 1 1183 171 0 60 chr3 72492099 72492271 -155032307 + MER58A DNA MER1_type 65 223 -1 329 185 0 0 chr3 72492372 72492426 -155032152 + MER112 DNA MER1_type 2 55 -205 872 207 29 34 chr3 72492427 72492635 -155031943 + MLT1F1 LTR MaLR 1 207 -360 402 311 36 21 chr3 72492861 72493054 -155031524 - MIR SINE MIR -8 254 59 1148 166 28 47 chr3 72493056 72493309 -155031269 - MLT1A1 LTR MaLR 0 365 118 579 171 0 0 chr3 72493409 72493538 -155031040 + G-rich Low_complexity Low_complexity 1 129 0 465 303 38 32 chr3 72493699 72493884 -155030694 - L2 LINE L2 -22 3291 3106 3791 75 2 2 chr3 72495069 72495522 -155029056 + MLT2A2 LTR ERVL 1 453 0 254 333 104 30 chr3 72495530 72495827 -155028751 + L2 LINE L2 2658 2976 -338 1982 182 55 50 chr3 72496121 72496485 -155028093 - MLT1C LTR MaLR 0 467 106 1178 138 61 0 chr3 72496485 72496666 -155027912 + L1PB4 LINE L1 5961 6152 -4 1982 182 55 50 chr3 72496666 72496735 -155027843 - MLT1C LTR MaLR -361 106 29 2032 137 52 24 chr3 72496735 72497063 -155027515 + MER1B DNA MER1_type 1 337 0 1982 182 55 50 chr3 72497063 72497083 -155027495 - MLT1C LTR MaLR -438 29 11 336 304 0 0 chr3 72497093 72497172 -155027406 + L2 LINE L2 3194 3272 0 1035 192 106 36 chr3 72497248 72497550 -155027028 + MER33 DNA MER1_type 2 324 0 1619 205 7 3 chr3 72497585 72497888 -155026690 - AluJb SINE Alu -8 304 1 294 167 44 56 chr3 72497945 72498035 -155026543 + (TATATG)n Simple_repeat Simple_repeat 2 90 0 514 270 146 16 chr3 72498036 72498221 -155026357 - MIR SINE MIR -26 236 28 25 0 0 0 chr3 72499683 72499708 -155024870 + AT_rich Low_complexity Low_complexity 1 25 0 251 275 119 62 chr3 72499781 72499974 -155024604 - L2 LINE L2 -556 2758 2555 * 330 340 21 0 chr3 72499951 72500092 -155024486 + MIR SINE MIR 66 209 -53 244 363 0 26 chr3 72501102 72501215 -155023363 + L2 LINE L2 3203 3312 -1 251 345 100 18 chr3 72501236 72501346 -155023232 + L2 LINE L2 3073 3191 -81 438 313 139 31 chr3 72502457 72502895 -155021683 - L2 LINE L2 -14 3258 2783 4867 205 34 16 chr3 72503182 72504260 -155020318 - L1MD2 LINE L1 -1 7766 6197 259 259 176 0 chr3 72504268 72504353 -155020225 - MIR SINE MIR -109 153 54 269 301 52 74 chr3 72504436 72504665 -155019913 + MLT1L LTR MaLR 97 320 -295 282 313 61 9 chr3 72505181 72505296 -155019282 - MIR3 SINE MIR -17 191 71 296 285 7 76 chr3 72506775 72506919 -155017659 - MIR SINE MIR -50 212 79 219 213 43 0 chr3 72506935 72506982 -155017596 - L2 LINE L2 -2 3311 3263 878 236 23 41 chr3 72507055 72507275 -155017303 - MER20 DNA MER1_type 0 219 4 181 200 0 0 chr3 72507421 72507456 -155017122 - L2 LINE L2 -10 3303 3269 187 302 35 23 chr3 72507459 72507545 -155017033 - MIR3 SINE MIR -120 88 2 343 153 24 71 chr3 72509109 72509194 -155015384 + Charlie8 DNA MER1_type 185 265 -2152 4226 158 22 10 chr3 72509774 72510465 -155014113 + L1MC1 LINE L1 5635 6333 0 2699 101 22 0 chr3 72510540 72510907 -155013671 + L1PA11 LINE L1 5799 6173 -1 247 310 58 47 chr3 72511078 72511127 -155013451 + MER5B DNA MER1_type 6 53 -125 210 91 0 0 chr3 72511127 72511160 -155013418 + (TA)n Simple_repeat Simple_repeat 2 34 0 247 310 58 47 chr3 72511160 72511281 -155013297 + MER5B DNA MER1_type 53 178 0 260 168 317 0 chr3 72511357 72511458 -155013120 - MER117 DNA MER1_type -55 142 10 403 278 104 7 chr3 72511579 72511723 -155012855 + L2 LINE L2 2550 2707 -607 560 333 37 54 chr3 72511928 72512409 -155012169 + L2 LINE L2 2837 3309 -4 1281 130 20 87 chr3 72512439 72512693 -155011885 + AluSx SINE Alu 2 238 -74 330 304 0 0 chr3 72512728 72512830 -155011748 + G-rich Low_complexity Low_complexity 1 102 0 445 237 86 26 chr3 72512964 72513116 -155011462 + ERVL LTR ERVL 4744 4904 -860 2177 121 66 16 chr3 72513364 72513727 -155010851 + LTR49 LTR ERV1 1 381 -214 973 161 19 0 chr3 72513731 72513886 -155010692 - AluJb SINE Alu -8 304 147 1198 132 52 14 chr3 72513918 72514131 -155010447 + LTR29 LTR ERV1 402 622 0 1578 230 220 15 chr3 72514174 72514834 -155009744 + LTR50 LTR ERVL 1 795 0 233 363 29 20 chr3 72515061 72515163 -155009415 + MIR SINE MIR 5 107 -155 6041 111 26 2 chr3 72515177 72516137 -155008441 - L1PB1 LINE L1 -1 6150 5172 234 276 32 103 chr3 72516150 72516306 -155008272 + MIR SINE MIR 118 262 0 371 191 0 0 chr3 72516669 72516753 -155007825 + CT-rich Low_complexity Low_complexity 1 84 0 218 156 22 0 chr3 72516767 72516812 -155007766 + C-rich Low_complexity Low_complexity 1 46 0 303 266 154 48 chr3 72516916 72517104 -155007474 + L1M2 LINE L1 1200 1407 -5442 334 227 126 19 chr3 72517899 72518042 -155006536 + MIR3 SINE MIR 50 199 -42 1934 148 3 3 chr3 72518656 72518959 -155005619 + AluSg SINE Alu 1 303 -7 1537 136 3 75 chr3 72519004 72519298 -155005280 + AluJb SINE Alu 40 312 0 734 344 126 19 chr3 72519356 72519892 -155004686 + L2 LINE L2 2709 3310 -3 2147 100 0 21 chr3 72520246 72520556 -155004022 + AluSq SINE Alu 7 313 0 1656 244 129 40 chr3 72520768 72521272 -155003306 + MLT1H LTR MaLR 1 549 0 269 258 0 15 chr3 72522627 72522693 -155001885 - MIR SINE MIR -146 116 52 10643 146 13 7 chr3 72522988 72524998 -154999580 + L1M3 LINE L1 3552 5573 -610 944 222 16 5 chr3 72525053 72525242 -154999336 + MER58A DNA MER1_type 2 192 -32 593 318 55 17 chr3 72525798 72526034 -154998544 + MIR SINE MIR 18 262 0 1701 144 55 21 chr3 72526883 72527174 -154997404 - AluJb SINE Alu -11 301 1 578 328 92 31 chr3 72527582 72527908 -154996670 - L2 LINE L2 0 3313 2968 579 228 55 69 chr3 72527937 72528139 -154996439 + MLT1E LTR MaLR 54 252 -402 1560 186 0 21 chr3 72528149 72528439 -154996139 - AluJo SINE Alu -28 284 1 1314 214 24 0 chr3 72528523 72528775 -154995803 + MLT1E LTR MaLR 336 593 0 314 217 72 29 chr3 72528887 72528956 -154995622 + L2 LINE L2 3240 3311 -2 2411 51 3 70 chr3 72529838 72530169 -154994409 + AluY SINE Alu 1 309 -2 1513 184 52 0 chr3 72530513 72530763 -154993815 - AluJb SINE Alu -22 290 28 2179 126 3 7 chr3 72531866 72532175 -154992403 + AluSx SINE Alu 1 308 -4 405 250 40 0 chr3 72532186 72532286 -154992292 - MER113 DNA MER1_type? -414 107 4 1064 274 78 39 chr3 72532375 72532963 -154991615 - L1ME4a LINE L1 -28 6093 5483 1898 108 97 0 chr3 72533248 72533517 -154991061 - AluSx SINE Alu -17 295 1 204 200 0 0 chr3 72533932 72533972 -154990606 + (TGG)n Simple_repeat Simple_repeat 3 42 0 35 24 0 0 chr3 72534023 72534065 -154990513 + AT_rich Low_complexity Low_complexity 1 42 0 306 309 64 11 chr3 72534312 72534406 -154990172 - L2 LINE L2 0 3272 3174 276 292 8 62 chr3 72534430 72534560 -154990018 - MER5A DNA MER1_type -23 166 44 217 150 0 0 chr3 72534583 72534623 -154989955 + L2 LINE L2 3274 3313 0 622 157 0 43 chr3 72534967 72535082 -154989496 - ORSL DNA AcHobo -1 274 165 488 270 86 0 chr3 72535675 72535827 -154988751 + MIR SINE MIR 35 199 -63 518 193 132 0 chr3 72535852 72535966 -154988612 + MIR SINE MIR 26 154 -108 998 173 79 14 chr3 72535982 72536130 -154988448 - AluJb SINE Alu -21 291 123 216 0 0 0 chr3 72536130 72536154 -154988424 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 998 173 79 14 chr3 72536154 72536219 -154988359 - AluJb SINE Alu -189 123 64 531 200 24 40 chr3 72536585 72536710 -154987868 + MER5A DNA MER1_type 67 189 0 2058 115 19 26 chr3 72536717 72537030 -154987548 - AluSx SINE Alu -1 311 1 392 211 14 122 chr3 72537202 72537349 -154987229 + MER5B DNA MER1_type 3 133 -45 244 178 0 0 chr3 72537386 72537431 -154987147 + MIR SINE MIR 88 132 -130 596 258 10 7 chr3 72537433 72537591 -154986987 - L1ME3 LINE L1 -36 6126 5976 297 232 0 0 chr3 72537592 72537648 -154986930 - MER5B DNA MER1_type -120 58 3 835 243 50 14 chr3 72538009 72538450 -154986128 - Charlie4a DNA MER1_type -2 506 17 812 261 119 47 chr3 72538899 72539519 -154985059 - L1ME3 LINE L1 -172 5949 5285 250 233 108 67 chr3 72539828 72539948 -154984630 - MIR SINE MIR -108 154 30 320 281 73 0 chr3 72540050 72540146 -154984432 - MIR SINE MIR 0 262 160 2400 184 44 2 chr3 72540277 72540711 -154983867 + MER66A LTR ERV1 27 478 0 250 246 0 0 chr3 72540971 72541032 -154983546 - MIR SINE MIR -88 174 114 192 77 0 0 chr3 72541141 72541167 -154983411 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 848 237 38 75 chr3 72541802 72542228 -154982350 + L1MC5 LINE L1 7496 7905 -56 496 195 12 0 chr3 72542234 72542316 -154982262 - AluSq SINE Alu -141 172 90 429 20 0 0 chr3 72542318 72542368 -154982210 + (TCTA)n Simple_repeat Simple_repeat 2 51 0 34 0 0 0 chr3 72542369 72542403 -154982175 + AT_rich Low_complexity Low_complexity 1 34 0 2378 69 38 0 chr3 72542722 72543013 -154981565 - AluY SINE Alu -9 302 1 1896 158 21 0 chr3 72543037 72543322 -154981256 - AluSx SINE Alu -21 291 1 928 292 180 23 chr3 72544342 72545236 -154979342 + L2 LINE L2 2265 3294 -19 189 0 0 0 chr3 72545246 72545267 -154979311 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 638 337 28 68 chr3 72546065 72546574 -154978004 + L2 LINE L2 2740 3227 -45 890 306 64 31 chr3 72546717 72547109 -154977469 + MLT1I LTR MaLR 2 406 -3 230 283 71 145 chr3 72547167 72547289 -154977289 - MIR SINE MIR 0 262 133 1585 186 7 28 chr3 72547289 72547606 -154976972 - AluJo SINE Alu 0 311 1 230 283 71 145 chr3 72547606 72547765 -154976813 - MIR SINE MIR -129 133 1 2424 92 0 0 chr3 72547780 72548083 -154976495 - AluY SINE Alu -7 304 2 189 147 0 0 chr3 72548102 72548136 -154976442 + (A)n Simple_repeat Simple_repeat 1 34 0 797 191 59 50 chr3 72548671 72548891 -154975687 - MIR SINE MIR -9 253 32 531 323 75 0 chr3 72548965 72549151 -154975427 - MIR SINE MIR -33 229 30 512 147 61 184 chr3 72549727 72549972 -154974606 - MER20 DNA MER1_type -4 215 1 271 250 0 14 chr3 72551769 72551841 -154972737 + L2 LINE L2 2702 2772 -542 259 324 9 19 chr3 72551851 72551956 -154972622 - MIR SINE MIR -138 124 21 653 281 25 0 chr3 72552139 72552335 -154972243 + MER3 DNA MER1_type 9 209 0 713 281 60 14 chr3 72552429 72552646 -154971932 + MIR SINE MIR 36 262 0 375 288 8 17 chr3 72552835 72552953 -154971625 - MIR SINE MIR -100 162 46 826 272 113 48 chr3 72553954 72554370 -154970208 + L1ME3A LINE L1 5512 5954 -216 405 302 8 40 chr3 72555027 72555094 -154969484 - MIR SINE MIR -121 141 78 494 67 67 0 chr3 72555094 72555169 -154969409 - MADE1 DNA Mariner 0 80 1 405 302 8 40 chr3 72555169 72555227 -154969351 - MIR SINE MIR -184 78 20 219 227 133 0 chr3 72555898 72555973 -154968605 + MIR SINE MIR 80 164 -98 639 309 15 15 chr3 72556441 72556645 -154967933 + MIR SINE MIR 5 208 -54 412 283 128 68 chr3 72556783 72557165 -154967413 + MLT1I LTR MaLR 1 405 -4 831 171 26 52 chr3 72557186 72557379 -154967199 + MER20 DNA MER1_type 1 188 -31 181 338 59 0 chr3 72557941 72558009 -154966569 - MIR SINE MIR -102 106 35 247 270 67 22 chr3 72558162 72558251 -154966327 + MIR SINE MIR 168 260 -2 319 299 99 55 chr3 72558654 72558998 -154965580 - L2 LINE L2 -11 3302 2944 1027 251 120 54 chr3 72559066 72559567 -154965011 + MLT1F1 LTR MaLR 1 559 -8 223 173 19 0 chr3 72559821 72559873 -154964705 - MIR SINE MIR -131 131 79 1635 122 14 5 chr3 72560665 72561101 -154963477 - L1PB2 LINE L1 -2 6149 5660 237 257 29 0 chr3 72561114 72561184 -154963394 - L1ME3 LINE L1 -45 6117 6046 694 208 7 0 chr3 72561185 72561329 -154963249 + MER3 DNA MER1_type 1 145 -64 318 148 0 0 chr3 72561335 72561389 -154963189 - MER3 DNA MER1_type -135 74 21 1234 243 43 25 chr3 72561399 72561803 -154962775 - L1ME3 LINE L1 -147 6027 5622 358 274 201 9 chr3 72561924 72562253 -154962325 + L1ME3A LINE L1 5557 5948 -222 21 0 0 0 chr3 72562461 72562482 -154962096 + AT_rich Low_complexity Low_complexity 1 21 0 511 313 36 47 chr3 72562494 72562772 -154961806 + MLT1J LTR MaLR 2 276 -235 338 240 138 18 chr3 72563052 72563210 -154961368 + MIR3 SINE MIR 34 166 -42 2014 132 7 10 chr3 72563824 72564128 -154960450 + AluSg SINE Alu 1 303 -7 1552 123 3 92 chr3 72564175 72564468 -154960110 + AluJb SINE Alu 42 308 -4 800 338 127 20 chr3 72564526 72565062 -154959516 + L2 LINE L2 2709 3310 -3 2122 107 0 21 chr3 72565415 72565725 -154958853 + AluSq SINE Alu 7 313 0 1456 244 129 40 chr3 72565937 72566441 -154958137 + MLT1H LTR MaLR 1 549 0 286 277 0 0 chr3 72567795 72567860 -154956718 - MIR SINE MIR -146 116 52 9802 145 13 7 chr3 72568154 72570163 -154954415 + L1M3 LINE L1 3552 5573 -610 886 217 16 5 chr3 72570218 72570407 -154954171 + MER58A DNA MER1_type 2 192 -32 627 309 55 17 chr3 72570963 72571199 -154953379 + MIR SINE MIR 18 262 0 1722 144 55 20 chr3 72572048 72572340 -154952238 - AluJb SINE Alu -10 302 1 585 327 90 36 chr3 72572748 72573081 -154951497 - L2 LINE L2 0 3313 2963 505 238 55 69 chr3 72573103 72573305 -154951273 + MLT1E LTR MaLR 54 252 -402 1559 186 0 21 chr3 72573315 72573605 -154950973 - AluJo SINE Alu -28 284 1 1191 214 24 0 chr3 72573689 72573941 -154950637 + MLT1E LTR MaLR 336 593 0 292 232 72 29 chr3 72574053 72574122 -154950456 + L2 LINE L2 3240 3311 -2 2398 48 3 78 chr3 72575006 72575341 -154949237 + AluY SINE Alu 1 310 -1 1536 184 52 0 chr3 72575685 72575935 -154948643 - AluJb SINE Alu -22 290 28 2216 123 3 10 chr3 72577037 72577346 -154947232 + AluSx SINE Alu 1 307 -5 361 250 40 0 chr3 72577357 72577457 -154947121 - MER113 DNA MER1_type? -414 107 4 819 274 78 39 chr3 72577546 72578134 -154946444 - L1ME4a LINE L1 -28 6093 5483 1888 112 97 0 chr3 72578419 72578688 -154945890 - AluSx SINE Alu -17 295 1 204 200 0 0 chr3 72579103 72579143 -154945435 + (TGG)n Simple_repeat Simple_repeat 3 42 0 35 24 0 0 chr3 72579194 72579236 -154945342 + AT_rich Low_complexity Low_complexity 1 42 0 316 309 64 11 chr3 72579483 72579577 -154945001 - L2 LINE L2 0 3272 3174 281 292 8 62 chr3 72579601 72579731 -154944847 - MER5A DNA MER1_type -23 166 44 221 150 0 0 chr3 72579754 72579794 -154944784 + L2 LINE L2 3274 3313 0 568 157 0 43 chr3 72580138 72580253 -154944325 - ORSL DNA AcHobo -1 274 165 486 270 86 0 chr3 72580846 72580998 -154943580 + MIR SINE MIR 35 199 -63 516 193 132 0 chr3 72581023 72581137 -154943441 + MIR SINE MIR 26 154 -108 1640 159 47 0 chr3 72581153 72581301 -154943277 - AluJb SINE Alu -21 291 151 225 0 0 0 chr3 72581301 72581326 -154943252 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1640 159 47 0 chr3 72581326 72581453 -154943125 - AluJb SINE Alu -161 151 3 993 224 9 28 chr3 72581460 72581674 -154942904 - AluJo SINE Alu -19 293 84 274 205 115 26 chr3 72581687 72581765 -154942813 + MIR SINE MIR 178 262 0 310 301 0 58 chr3 72581900 72582003 -154942575 + L2 LINE L2 3137 3233 -39 212 170 21 21 chr3 72582045 72582092 -154942486 - MIR SINE MIR -64 144 98 327 197 0 0 chr3 72582945 72583006 -154941572 + MIR SINE MIR 62 122 -86 2081 111 6 43 chr3 72583009 72583334 -154941244 - AluSq SINE Alu 0 313 1 471 339 108 54 chr3 72583456 72584090 -154940488 - L2 LINE L2 -35 3237 2583 575 262 34 29 chr3 72584240 72584446 -154940132 + L2 LINE L2 3107 3313 0 2797 73 3 14 chr3 72584661 72585029 -154939549 - THE1B LTR MaLR 0 364 1 719 260 18 6 chr3 72586062 72586231 -154938347 + MIR SINE MIR 10 180 -82 197 289 182 0 chr3 72587217 72587349 -154937229 - MIR SINE MIR -58 204 45 645 165 95 51 chr3 72587360 72587518 -154937060 - FRAM SINE Alu -11 165 1 243 203 0 17 chr3 72588224 72588283 -154936295 + LTR67 LTR ERVL 500 557 0 182 146 0 36 chr3 72588326 72588381 -154936197 + (CAAAAA)n Simple_repeat Simple_repeat 2 54 0 1167 180 112 56 chr3 72589148 72589342 -154935236 - MER2 DNA MER2_type 0 344 123 1894 162 3 3 chr3 72589342 72589644 -154934934 + AluJb SINE Alu 1 302 -10 1167 180 112 56 chr3 72589644 72589772 -154934806 - MER2 DNA MER2_type -221 123 4 967 247 82 31 chr3 72590059 72590509 -154934069 + MLT1K LTR MaLR 3 475 -1 522 246 109 0 chr3 72592489 72592627 -154931951 + MIR SINE MIR 78 230 -32 1820 188 42 30 chr3 72593035 72593466 -154931112 - MER63B DNA MER1_type 0 436 1 255 318 11 11 chr3 72593893 72593981 -154930597 + L2 LINE L2 3185 3272 0 201 316 0 26 chr3 72594339 72594415 -154930163 + MIR SINE MIR 118 191 -71 23 33 0 0 chr3 72594427 72594457 -154930121 + AT_rich Low_complexity Low_complexity 1 30 0 1203 173 67 14 chr3 72594719 72595017 -154929561 - MER33 DNA MER1_type -22 302 1 248 330 50 0 chr3 72595502 72595602 -154928976 - L2 LINE L2 -2 3270 3166 219 227 50 67 chr3 72595613 72595732 -154928846 - L2 LINE L2 -55 3258 3142 685 241 92 0 chr3 72596003 72596177 -154928401 + MIR SINE MIR 72 261 -1 2073 113 7 40 chr3 72596194 72596495 -154928083 - AluSx SINE Alu -17 295 5 185 244 89 0 chr3 72596502 72596547 -154928031 + L2 LINE L2 2919 2967 -305 489 271 46 60 chr3 72596713 72596948 -154927630 + MIR SINE MIR 3 230 -32 500 303 82 12 chr3 72596968 72597221 -154927357 + L2 LINE L2 2788 3066 -247 2167 135 0 0 chr3 72597386 72597689 -154926889 - AluSx SINE Alu -5 307 5 524 283 27 0 chr3 72597703 72597890 -154926688 - L1ME3A LINE L1 -71 6099 5908 457 224 43 0 chr3 72597893 72598009 -154926569 - L1ME3A LINE L1 -304 5860 5740 341 288 7 118 chr3 72598045 72598198 -154926380 + L2 LINE L2 3137 3272 0 309 330 52 0 chr3 72598203 72598300 -154926278 - L2 LINE L2 -22 3250 3149 336 252 110 124 chr3 72598897 72599115 -154925463 + MIR SINE MIR 33 247 -15 269 220 64 64 chr3 72599554 72599663 -154924915 + MLT1J LTR MaLR 403 511 0 23 0 0 0 chr3 72600137 72600160 -154924418 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 72600845 72600868 -154923710 + AT_rich Low_complexity Low_complexity 1 23 0 4750 209 88 21 chr3 72601426 72601989 -154922589 - Charlie1a DNA MER1_type -1312 1449 925 2020 130 0 57 chr3 72601989 72602320 -154922258 - AluSx SINE Alu 0 312 1 4750 209 88 21 chr3 72602320 72603080 -154921498 - Charlie1a DNA MER1_type -1836 925 38 267 312 54 48 chr3 72603140 72603326 -154921252 - L2 LINE L2 -416 2898 2712 2329 67 0 0 chr3 72603340 72603646 -154920932 + AluY SINE Alu 1 306 0 1215 153 9 13 chr3 72604470 72604699 -154919879 + L1MC2 LINE L1 6108 6335 -9 400 340 6 19 chr3 72605572 72605728 -154918850 + MER5B DNA MER1_type 25 178 0 1817 113 62 0 chr3 72605875 72606131 -154918447 - AluSx SINE Alu -17 295 24 389 354 61 6 chr3 72606762 72606943 -154917635 + L3 LINE CR1 1266 1456 -121 661 129 0 0 chr3 72607047 72607140 -154917438 - AluJ/FLAM SINE Alu -219 93 1 1076 186 29 14 chr3 72607186 72607396 -154917182 + AluJo SINE Alu 86 298 -14 1049 204 40 89 chr3 72607405 72607876 -154916702 + LTR37B LTR ERV1 21 468 0 198 234 47 47 chr3 72607876 72607940 -154916638 + MIR SINE MIR 198 261 -1 189 0 0 0 chr3 72608807 72608828 -154915750 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 203 254 0 0 chr3 72609248 72609303 -154915275 + (TCCA)n Simple_repeat Simple_repeat 3 57 0 475 231 60 26 chr3 72609305 72609422 -154915156 - L2 LINE L2 -9 3304 3184 2357 108 0 0 chr3 72609721 72610027 -154914551 - AluSx SINE Alu -6 306 1 354 209 12 47 chr3 72610486 72610572 -154914006 + MIR SINE MIR 28 110 -152 362 321 98 12 chr3 72610608 72610854 -154913724 + L1MC5 LINE L1 5673 5939 -1869 2585 216 59 69 chr3 72610944 72612182 -154912396 + L1MC5 LINE L1 6694 7919 -42 641 225 156 31 chr3 72612585 72612874 -154911704 + Charlie7 DNA MER1_type 430 754 -1858 2150 136 3 0 chr3 72612898 72613208 -154911370 + AluSx SINE Alu 1 311 -1 1536 184 4 15 chr3 72613351 72613612 -154910966 + AluJo SINE Alu 25 282 -30 192 179 0 0 chr3 72613618 72613657 -154910921 + (CA)n Simple_repeat Simple_repeat 2 40 0 904 242 92 60 chr3 72613721 72613979 -154910599 + Charlie7 DNA MER1_type 1971 2219 -393 1872 158 0 3 chr3 72613979 72614263 -154910315 + AluJb SINE Alu 1 283 -29 904 242 92 60 chr3 72614263 72614623 -154909955 + Charlie7 DNA MER1_type 2219 2609 -3 593 305 119 4 chr3 72614628 72614854 -154909724 + MIR SINE MIR 11 262 0 233 213 0 0 chr3 72614857 72614904 -154909674 + (CAT)n Simple_repeat Simple_repeat 2 48 0 22 0 0 0 chr3 72614939 72614961 -154909617 + AT_rich Low_complexity Low_complexity 1 22 0 345 371 69 6 chr3 72616166 72616325 -154908253 - MIR SINE MIR -45 217 49 203 292 10 21 chr3 72616770 72616866 -154907712 - MIR SINE MIR 0 262 168 * 479 248 9 9 chr3 72616854 72616967 -154907611 - L2 LINE L2 -9 3304 3192 269 201 115 50 chr3 72617174 72617313 -154907265 + L1ME4a LINE L1 5955 6102 -19 309 289 125 10 chr3 72617562 72617666 -154906912 + MIR3 SINE MIR 56 171 -37 827 196 98 0 chr3 72618166 72618350 -154906228 + MER3 DNA MER1_type 8 209 0 521 199 140 99 chr3 72618368 72618539 -154906039 + MER5A DNA MER1_type 12 189 0 455 247 207 17 chr3 72618718 72618892 -154905686 + MIR SINE MIR 43 249 -13 1925 155 3 23 chr3 72619168 72619471 -154905107 - AluJb SINE Alu -15 297 1 1771 195 3 10 chr3 72619567 72619865 -154904713 - AluJo SINE Alu -16 296 1 446 224 152 16 chr3 72619900 72620025 -154904553 + MIR SINE MIR 16 157 -105 181 146 0 73 chr3 72620715 72620770 -154903808 + (CGTG)n Simple_repeat Simple_repeat 4 54 0 486 320 55 17 chr3 72621081 72621262 -154903316 + MIR SINE MIR 6 193 -69 472 333 18 27 chr3 72621290 72621515 -154903063 - MIR SINE MIR -31 231 9 225 0 0 0 chr3 72621746 72621771 -154902807 + (A)n Simple_repeat Simple_repeat 1 25 0 217 316 176 21 chr3 72622252 72622439 -154902139 + L2 LINE L2 3080 3295 -18 678 346 70 12 chr3 72622572 72622899 -154901679 - L2 LINE L2 0 3272 2927 1660 207 13 0 chr3 72623081 72623381 -154901197 - 7SLRNA srpRNA srpRNA -11 309 6 210 320 100 10 chr3 72624275 72624375 -154900203 + L2 LINE L2 3163 3271 -1 2388 87 15 0 chr3 72624465 72624798 -154899780 + L1PA13 LINE L1 5826 6163 0 417 244 44 0 chr3 72624934 72625024 -154899554 - L2 LINE L2 0 3272 3179 1637 169 119 46 chr3 72625098 72625596 -154898982 + MLT2A2 LTR ERVL 1 554 0 286 340 31 10 chr3 72625612 72625709 -154898869 + L2 LINE L2 2995 3093 -179 303 219 68 0 chr3 72626288 72626361 -154898217 + MIR SINE MIR 5 82 -180 619 281 59 21 chr3 72626523 72626761 -154897817 + MIR SINE MIR 16 262 0 1335 280 86 0 chr3 72626820 72627238 -154897340 + LTR40a LTR ERVL 62 515 -4 291 54 0 0 chr3 72627249 72627286 -154897292 + (CAT)n Simple_repeat Simple_repeat 3 39 0 298 260 171 44 chr3 72627961 72628142 -154896436 + MIR SINE MIR 15 218 -44 479 315 119 9 chr3 72628611 72628830 -154895748 - MIR SINE MIR 0 262 20 209 371 11 51 chr3 72629288 72629466 -154895112 + L2 LINE L2 2921 3091 -181 662 198 94 61 chr3 72630326 72630538 -154894040 + MER20 DNA MER1_type 1 219 0 452 253 127 19 chr3 72630543 72630701 -154893877 + MIR SINE MIR 78 252 -10 324 324 109 52 chr3 72630777 72631163 -154893415 + L2 LINE L2 2830 3237 -76 204 97 0 0 chr3 72631741 72631772 -154892806 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1061 158 31 54 chr3 72631973 72632195 -154892383 - MER20 DNA MER1_type -1 218 2 382 274 23 89 chr3 72632200 72632459 -154892119 - MIR SINE MIR -15 247 6 196 239 15 75 chr3 72632540 72632607 -154891971 - L2 LINE L2 -5 3267 3205 1237 277 92 2 chr3 72632628 72633075 -154891503 + LTR33 LTR ERVL 19 505 -16 1222 162 9 40 chr3 72633293 72633515 -154891063 + AluJo SINE Alu 86 300 -12 510 246 49 0 chr3 72633535 72633657 -154890921 - MIR SINE MIR -70 192 65 2136 139 0 0 chr3 72634226 72634529 -154890049 - AluSq SINE Alu -10 303 1 2284 122 0 3 chr3 72634829 72635140 -154889438 - AluSg SINE Alu 0 310 1 1863 327 54 31 chr3 72635507 72636773 -154887805 + L2 LINE L2 2009 3309 -4 294 271 212 0 chr3 72637013 72637131 -154887447 + MIR3 SINE MIR 45 187 -21 24 0 0 0 chr3 72637355 72637379 -154887199 + AT_rich Low_complexity Low_complexity 1 24 0 285 229 39 39 chr3 72639109 72639262 -154885316 + L1ME4a LINE L1 5966 6118 -3 3634 213 19 5 chr3 72639943 72640813 -154883765 + L1P LINE L1 4499 5381 -765 276 344 52 0 chr3 72640813 72640909 -154883669 + L2 LINE L2 3172 3272 0 509 168 101 88 chr3 72641208 72641355 -154883223 - Charlie5 DNA MER1_type -10 2575 2422 634 110 20 10 chr3 72641355 72641455 -154883123 + U6 snRNA snRNA 3 103 -4 509 168 101 88 chr3 72641455 72641545 -154883033 - Charlie5 DNA MER1_type -163 2422 2335 1196 235 69 12 chr3 72642086 72642494 -154882084 + L1ME3A LINE L1 5657 6087 -83 3183 199 47 35 chr3 72645296 72646161 -154878417 + L1ME2 LINE L1 5280 6155 -9 384 22 0 0 chr3 72646368 72646413 -154878165 + (TG)n Simple_repeat Simple_repeat 2 46 0 2982 175 72 14 chr3 72646415 72646985 -154877593 + MER77 LTR ERV1 3 605 0 183 80 0 0 chr3 72646997 72647022 -154877556 + (CA)n Simple_repeat Simple_repeat 1 25 0 262 333 42 21 chr3 72647501 72647597 -154876981 + L2 LINE L2 3142 3239 -33 351 342 0 9 chr3 72647631 72647745 -154876833 + L2 LINE L2 2896 3008 -264 2222 122 0 6 chr3 72647755 72648066 -154876512 - AluSc SINE Alu 0 309 1 1802 231 79 27 chr3 72648143 72648274 -154876304 - MLT1E2 LTR MaLR 0 626 503 1543 164 51 128 chr3 72648274 72648780 -154875798 - MLT1C LTR MaLR 0 467 1 1802 231 79 27 chr3 72648780 72649251 -154875327 - MLT1E2 LTR MaLR -123 503 1 278 286 60 38 chr3 72649302 72649435 -154875143 + L2 LINE L2 3178 3313 0 2278 113 0 0 chr3 72649527 72649828 -154874750 + AluSx SINE Alu 1 301 -11 25 0 0 0 chr3 72649828 72649853 -154874725 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr3 72650455 72650486 -154874092 + AT_rich Low_complexity Low_complexity 1 31 0 270 136 0 0 chr3 72651134 72651178 -154873400 + (A)n Simple_repeat Simple_repeat 1 44 0 734 202 87 17 chr3 72652309 72652482 -154872096 + MER5A DNA MER1_type 5 189 0 399 287 60 47 chr3 72652494 72652644 -154871934 - MIR SINE MIR -76 186 35 987 183 20 0 chr3 72653292 72653489 -154871089 + L1MD2 LINE L1 6156 6356 -3 536 289 61 28 chr3 72654364 72654544 -154870034 - MIR SINE MIR -71 191 6 302 271 140 9 chr3 72654855 72654962 -154869616 - MIR SINE MIR -50 212 92 259 257 40 30 chr3 72655003 72655104 -154869474 - MER20B DNA MER1_type -607 176 75 21 36 0 0 chr3 72655565 72655593 -154868985 + AT_rich Low_complexity Low_complexity 1 28 0 1331 204 99 6 chr3 72656138 72656451 -154868127 - MER2 DNA MER2_type -1 343 2 183 186 0 0 chr3 72656970 72657013 -154867565 + (TGGG)n Simple_repeat Simple_repeat 3 45 0 822 249 107 0 chr3 72658129 72658354 -154866224 - MIR SINE MIR -1 261 13 188 335 102 45 chr3 72658428 72658604 -154865974 + MIR SINE MIR 31 216 -46 * 197 232 316 32 chr3 72658599 72658694 -154865884 + L2 LINE L2 3192 3313 0 327 313 0 20 chr3 72658848 72658947 -154865631 - MIR SINE MIR -118 144 48 196 176 0 0 chr3 72659146 72659180 -154865398 - MER5B DNA MER1_type -2 176 143 * 327 263 88 0 chr3 72659170 72659250 -154865328 + MER5B DNA MER1_type 90 176 -2 216 263 38 25 chr3 72659320 72659400 -154865178 - MIR SINE MIR -141 121 41 1469 164 44 44 chr3 72660137 72660411 -154864167 - AluJo SINE Alu -27 285 12 371 301 112 34 chr3 72660827 72661033 -154863545 + L1ME4a LINE L1 5868 6089 -32 393 319 83 6 chr3 72661434 72661603 -154862975 + MIR SINE MIR 8 189 -73 275 266 53 43 chr3 72663033 72663127 -154861451 - MER5B DNA MER1_type 0 178 84 263 216 20 0 chr3 72663106 72663157 -154861421 + MER5B DNA MER1_type 127 178 0 * 601 260 40 12 chr3 72664114 72664287 -154860291 - MIR SINE MIR -65 197 20 308 303 83 14 chr3 72664671 72664816 -154859762 + MIR SINE MIR 7 161 -101 444 272 288 0 chr3 72665538 72665729 -154858849 + MIR SINE MIR 16 261 -1 312 327 78 87 chr3 72665872 72666162 -154858416 - L2 LINE L2 -17 3255 2969 1537 117 22 0 chr3 72666162 72666384 -154858194 - AluSg/x SINE Alu -12 300 74 312 327 78 87 chr3 72666384 72666539 -154858039 - L2 LINE L2 -303 2969 2814 235 247 22 56 chr3 72667103 72667192 -154857386 + MIR SINE MIR 68 153 -109 246 333 20 10 chr3 72668035 72668134 -154856444 - L3b LINE CR1 -131 1452 1353 1819 132 59 4 chr3 72668401 72668673 -154855905 + AluJb SINE Alu 1 287 -25 1007 246 15 0 chr3 72669173 72669372 -154855206 - MIR SINE MIR -51 211 10 284 283 86 73 chr3 72669527 72669760 -154854818 - MIR SINE MIR -14 248 13 717 259 98 33 chr3 72670413 72670460 -154854118 - MLT1J LTR MaLR -33 478 436 270 56 0 0 chr3 72670460 72670496 -154854082 + (TG)n Simple_repeat Simple_repeat 2 37 0 717 259 98 33 chr3 72670496 72670784 -154853794 - MLT1J LTR MaLR -75 436 121 481 209 75 15 chr3 72671806 72671940 -154852638 - LTR67 LTR ERVL -6 551 410 559 228 138 6 chr3 72672322 72672489 -154852089 + MIR SINE MIR 66 254 -8 1298 184 39 160 chr3 72672602 72672840 -154851738 - L1MC5 LINE L1 -421 7540 7275 1633 173 171 11 chr3 72672840 72673022 -154851556 + MSTA LTR MaLR 1 153 -275 261 0 0 0 chr3 72673022 72673051 -154851527 + (TC)n Simple_repeat Simple_repeat 1 29 0 1633 173 171 11 chr3 72673051 72673237 -154851341 + MSTA LTR MaLR 153 428 0 1298 184 39 160 chr3 72673237 72673627 -154850951 - L1MC5 LINE L1 -686 7275 7029 1968 137 16 13 chr3 72673627 72673934 -154850644 - AluSx SINE Alu -4 308 1 1298 184 39 160 chr3 72673934 72674109 -154850469 - L1MC5 LINE L1 -932 7029 6834 33900 28 2 0 chr3 72674249 72679299 -154845279 - L1PA2 LINE L1 -4 6151 1094 812 61 18 0 chr3 72679281 72679395 -154845183 - L1PA2 LINE L1 -6030 116 1 * 180 114 0 29 chr3 72679697 72679732 -154844846 + L2 LINE L2 3008 3041 -231 2213 115 6 3 chr3 72680310 72680622 -154843956 + AluSq SINE Alu 1 313 0 1742 149 18 0 chr3 72680646 72680921 -154843657 + AluJb SINE Alu 1 280 -32 198 0 0 0 chr3 72680927 72680949 -154843629 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1870 126 7 65 chr3 72681902 72682212 -154842366 - AluSx SINE Alu -20 292 1 22 0 0 0 chr3 72682557 72682579 -154841999 + AT_rich Low_complexity Low_complexity 1 22 0 374 279 59 38 chr3 72683233 72683470 -154841108 + L1ME4a LINE L1 4411 4652 -1494 337 302 118 73 chr3 72683484 72684181 -154840397 + L1ME4a LINE L1 4663 5390 -756 23 33 0 0 chr3 72684328 72684358 -154840220 + AT_rich Low_complexity Low_complexity 1 30 0 380 254 114 37 chr3 72684359 72684753 -154839825 + L1ME4a LINE L1 5650 6074 -47 462 308 56 54 chr3 72685054 72685499 -154839079 - MLT1L LTR MaLR -17 598 125 260 248 171 19 chr3 72687093 72687198 -154837380 + L2 LINE L2 2924 3044 -228 762 196 151 73 chr3 72687358 72687577 -154837001 + MER8 DNA MER2_type 4 239 0 210 341 24 24 chr3 72688614 72688696 -154835882 + L2 LINE L2 2692 2773 -541 2118 117 21 0 chr3 72689185 72689476 -154835102 - AluSc SINE Alu -12 297 1 193 319 0 29 chr3 72690028 72690097 -154834481 - L2 LINE L2 -4 3309 3243 810 274 72 0 chr3 72690180 72690417 -154834161 + MIR SINE MIR 6 259 -3 239 324 14 0 chr3 72690934 72691008 -154833570 + MER5C DNA MER1_type 1 75 -249 293 326 28 28 chr3 72691201 72691345 -154833233 - L2 LINE L2 -1023 2291 2148 1961 132 146 7 chr3 72691351 72691754 -154832824 - MLT1C LTR MaLR -8 459 1 216 0 0 0 chr3 72692353 72692377 -154832201 + (A)n Simple_repeat Simple_repeat 1 24 0 320 339 163 70 chr3 72693353 72693654 -154830924 - L2 LINE L2 -10 3262 2934 400 294 13 46 chr3 72693802 72693955 -154830623 - MIR SINE MIR -113 149 2 879 278 31 4 chr3 72694721 72694976 -154829602 - MIR SINE MIR 0 262 1 695 203 62 23 chr3 72695423 72695600 -154828978 - Charlie8 DNA MER1_type -2232 185 2 287 299 84 58 chr3 72695800 72695954 -154828624 - MIR3 SINE MIR -7 201 44 1057 184 78 0 chr3 72695961 72696179 -154828399 - MER46A DNA MER2_type -1 235 1 431 194 38 94 chr3 72696213 72696373 -154828205 + MLT1K LTR MaLR 432 582 -6 952 158 44 22 chr3 72698665 72698893 -154825685 + L1MC3 LINE L1 7553 7785 0 418 293 94 73 chr3 72701036 72701517 -154823061 + L1M2 LINE L1 595 1085 -5764 241 233 17 0 chr3 72701643 72701703 -154822875 + CT-rich Low_complexity Low_complexity 2 62 0 196 176 14 14 chr3 72701776 72701850 -154822728 + (CCG)n Simple_repeat Simple_repeat 2 75 0 342 287 155 0 chr3 72705618 72705747 -154818831 + MIR SINE MIR 17 165 -97 1355 226 44 73 chr3 72707884 72708032 -154816546 - MER39 LTR ERV1 -6 682 531 2004 131 7 10 chr3 72708032 72708364 -154816214 + AluSx SINE Alu 1 312 0 1355 226 44 73 chr3 72708364 72708754 -154815824 - MER39 LTR ERV1 -157 531 6 884 120 135 0 chr3 72708766 72708899 -154815679 + AluJb SINE Alu 145 295 -17 247 309 15 0 chr3 72709043 72709111 -154815467 + MIR SINE MIR 187 255 -7 538 250 72 22 chr3 72710541 72710721 -154813857 + MIR SINE MIR 33 221 -41 21 0 0 0 chr3 72711921 72711942 -154812636 + AT_rich Low_complexity Low_complexity 1 21 0 388 305 70 8 chr3 72712587 72712715 -154811863 - L2 LINE L2 -1 3271 3136 217 293 35 17 chr3 72713079 72713137 -154811441 + MIR SINE MIR 24 82 -180 205 214 0 18 chr3 72713285 72713341 -154811237 + (TAA)n Simple_repeat Simple_repeat 2 56 0 1328 191 183 77 chr3 72713395 72713860 -154810718 + MLT2B2 LTR ERVL 1 514 -1 817 177 16 0 chr3 72713914 72714038 -154810540 - FLAM_A SINE Alu -7 126 1 422 313 8 16 chr3 72714656 72714784 -154809794 - MER5A DNA MER1_type -3 186 60 795 349 100 6 chr3 72716067 72716577 -154808001 - MLT1K LTR MaLR -18 570 13 188 315 72 54 chr3 72717019 72717130 -154807448 + L2 LINE L2 3160 3272 0 662 295 95 5 chr3 72717133 72717333 -154807245 - MIR SINE MIR -5 257 40 259 200 80 0 chr3 72717443 72717454 -154807124 + MER3 DNA MER1_type 37 51 -158 368 169 56 0 chr3 72717454 72717525 -154807053 - MER3 DNA MER1_type 0 209 135 1927 121 43 20 chr3 72717527 72717640 -154806938 + AluSx SINE Alu 1 110 -202 2328 121 5 54 chr3 72717640 72718013 -154806565 - THE1A LTR MaLR 0 355 1 1927 121 43 20 chr3 72718013 72718204 -154806374 + AluSx SINE Alu 110 312 0 464 179 223 0 chr3 72718204 72718316 -154806262 - MER3 DNA MER1_type -72 137 1 1903 135 0 14 chr3 72718580 72718895 -154805683 - AluSq SINE Alu 0 311 1 182 284 15 30 chr3 72719008 72719075 -154805503 + MIR SINE MIR 14 79 -183 254 324 29 9 chr3 72720377 72720482 -154804096 - MIR SINE MIR 0 262 156 860 167 7 0 chr3 72720483 72720621 -154803957 - MER44D DNA MER2_type -1 608 470 239 188 57 10 chr3 72720621 72720866 -154803712 + AluJb SINE Alu 1 293 -9 2270 189 10 15 chr3 72720878 72721225 -154803353 - MER44D DNA MER2_type -2014 473 72 2410 154 72 40 chr3 72721225 72721598 -154802980 - LOR1b LTR ERV1 0 461 70 2036 135 13 3 chr3 72721598 72721901 -154802677 - AluSx SINE Alu -4 308 3 2410 154 72 40 chr3 72721901 72721974 -154802604 - LOR1b LTR ERV1 -391 70 1 2270 189 10 15 chr3 72721974 72722038 -154802540 - MER44D DNA MER2_type -2415 72 9 337 309 110 7 chr3 72722053 72722189 -154802389 - MIR SINE MIR -105 157 8 260 314 34 0 chr3 72722231 72722329 -154802249 - MIR SINE MIR -17 191 81 24 0 0 0 chr3 72722743 72722767 -154801811 + AT_rich Low_complexity Low_complexity 1 24 0 2820 188 4 30 chr3 72722854 72723353 -154801225 - MER66B LTR ERV1 0 486 1 403 279 50 60 chr3 72723747 72724030 -154800548 + L1MC4a LINE L1 5649 5928 -1880 240 240 0 0 chr3 72724686 72724790 -154799788 + CT-rich Low_complexity Low_complexity 1 104 0 1844 181 3 0 chr3 72725526 72725830 -154798748 - MER72 LTR ERV1 -2 720 416 1114 224 52 28 chr3 72725838 72726128 -154798450 + AluJo SINE Alu 9 305 -7 752 216 0 46 chr3 72726128 72726281 -154798297 - MER72 LTR ERV1 -298 424 279 982 241 10 0 chr3 72726399 72726594 -154797984 - MER72 LTR ERV1 -525 197 1 1381 161 27 76 chr3 72727004 72727334 -154797244 - L1MD3 LINE L1 -11 7984 7671 280 304 54 11 chr3 72727985 72728077 -154796501 + MIR SINE MIR 36 131 -77 1716 167 58 62 chr3 72728803 72729341 -154795237 + MLT2A2 LTR ERVL 3 554 0 4241 121 22 0 chr3 72729420 72730041 -154794537 + LTR24C LTR ERV1 1 635 0 653 221 67 40 chr3 72730359 72730612 -154793966 + MIR SINE MIR 2 261 -1 400 283 50 17 chr3 72731374 72731494 -154793084 - L2 LINE L2 0 3272 3149 539 282 47 57 chr3 72732065 72732309 -154792269 - MIR SINE MIR -5 257 12 218 263 92 53 chr3 72732447 72732599 -154791979 - L2 LINE L2 -204 3068 2911 1406 249 71 49 chr3 72732761 72733255 -154791323 + MLT1H LTR MaLR 41 545 -4 892 81 0 0 chr3 72733350 72733461 -154791117 - AluY SINE Alu -8 303 193 252 338 62 21 chr3 72733489 72733546 -154791032 - MIR3 SINE MIR -51 157 104 183 100 0 0 chr3 72733546 72733576 -154791002 + (CAA)n Simple_repeat Simple_repeat 1 30 0 252 338 62 21 chr3 72733576 72733663 -154790915 - MIR3 SINE MIR -104 104 31 251 379 89 16 chr3 72733684 72733874 -154790704 + L3 LINE CR1 398 601 -976 202 273 0 0 chr3 72734167 72734211 -154790367 + L2 LINE L2 3209 3252 -20 418 313 45 69 chr3 72734334 72734753 -154789825 + LTR16A1 LTR ERVL 8 416 -41 183 313 38 12 chr3 72734808 72734888 -154789690 + L2 LINE L2 3190 3271 -1 1276 133 28 76 chr3 72735042 72735291 -154789287 + AluJb SINE Alu 1 237 -75 192 125 0 0 chr3 72735296 72735328 -154789250 + (A)n Simple_repeat Simple_repeat 1 32 0 4876 61 0 8 chr3 72735328 72735914 -154788664 + L1PA6 LINE L1 5570 6150 -4 360 0 0 0 chr3 72735917 72735957 -154788621 + (GAAA)n Simple_repeat Simple_repeat 2 41 0 2482 107 6 0 chr3 72736052 72736390 -154788188 + L1PA13 LINE L1 5805 6144 -19 506 337 58 0 chr3 72736512 72736759 -154787819 - L2 LINE L2 -277 3036 2776 627 287 30 6 chr3 72736785 72736949 -154787629 + MIR SINE MIR 18 185 -77 196 238 12 83 chr3 72737535 72737619 -154786959 - L2 LINE L2 -3092 222 145 427 346 83 8 chr3 72737716 72737956 -154786622 - MIR SINE MIR -4 258 1 325 276 43 17 chr3 72738723 72738839 -154785739 - L2 LINE L2 -1 3312 3194 757 297 68 14 chr3 72738839 72739135 -154785443 + MLT1G1 LTR MaLR 1 312 -283 347 248 111 8 chr3 72739559 72739676 -154784902 - MIR SINE MIR -128 134 6 421 309 16 8 chr3 72740206 72740332 -154784246 + MIR SINE MIR 19 145 -63 353 198 12 37 chr3 72740358 72740391 -154784187 + MER117 DNA MER1_type 11 43 -154 2540 193 92 10 chr3 72740391 72740899 -154783679 - MER44D DNA MER2_type 0 605 1 353 198 12 37 chr3 72740899 72740946 -154783632 + MER117 DNA MER1_type 43 89 -108 229 337 54 0 chr3 72741149 72741241 -154783337 + L2 LINE L2 3099 3195 -77 370 338 13 19 chr3 72741275 72741432 -154783146 + MIR SINE MIR 107 262 0 193 100 0 40 chr3 72741884 72741920 -154782658 + (TTTG)n Simple_repeat Simple_repeat 2 37 -12 9184 57 3 13 chr3 72741920 72743837 -154780741 - L1PA6 LINE L1 -1 6153 4248 193 100 0 40 chr3 72743837 72743850 -154780728 + (TTTG)n Simple_repeat Simple_repeat 37 49 0 294 322 43 9 chr3 72744101 72744216 -154780362 + MIR SINE MIR 6 124 -138 319 269 71 59 chr3 72744902 72745155 -154779423 + MER112 DNA MER1_type 1 256 0 752 174 150 18 chr3 72745659 72745826 -154778752 + MER53 DNA DNA 1 189 0 257 0 30 0 chr3 72746142 72746175 -154778403 + (CA)n Simple_repeat Simple_repeat 2 35 0 243 0 0 0 chr3 72746174 72746201 -154778377 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 257 264 73 88 chr3 72746589 72746749 -154777829 + MIR SINE MIR 2 156 -79 243 0 0 0 chr3 72746759 72746786 -154777792 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 811 218 56 0 chr3 72746857 72747036 -154777542 + MER5A DNA MER1_type 1 189 0 222 240 62 158 chr3 72747277 72747423 -154777155 - L2 LINE L2 0 3313 3182 747 149 24 192 chr3 72747880 72748027 -154776551 + MER20 DNA MER1_type 8 178 -41 1543 172 71 4 chr3 72748027 72748294 -154776284 + AluJo SINE Alu 1 285 -27 747 149 24 192 chr3 72748294 72748359 -154776219 + MER20 DNA MER1_type 178 174 -45 1999 142 61 28 chr3 72748359 72748719 -154775859 + THE1C LTR MaLR 1 372 -3 747 149 24 192 chr3 72748719 72748760 -154775818 + MER20 DNA MER1_type 173 219 0 189 74 0 0 chr3 72748938 72748965 -154775613 + (CA)n Simple_repeat Simple_repeat 2 28 0 2213 139 12 16 chr3 72749046 72749425 -154775153 + MLT2A2 LTR ERVL 1 309 -144 1151 147 6 0 chr3 72749520 72749697 -154774881 + MLT2A2 LTR ERVL 276 453 0 614 98 24 24 chr3 72750463 72750586 -154773992 + (TTCC)n Simple_repeat Simple_repeat 3 125 0 240 176 0 118 chr3 72751161 72751229 -154773349 + MIR SINE MIR 112 171 -91 189 338 0 15 chr3 72751284 72751352 -154773226 + MIR SINE MIR 196 262 0 1276 198 0 0 chr3 72752776 72753120 -154771458 + AluJb SINE Alu 48 391 0 549 301 56 19 chr3 72754622 72754838 -154769740 + MIR SINE MIR 9 232 -30 195 229 0 0 chr3 72755627 72755688 -154768890 + (TGGA)n Simple_repeat Simple_repeat 1 61 0 468 0 0 0 chr3 72756062 72756114 -154768464 + (TA)n Simple_repeat Simple_repeat 2 53 0 2668 42 0 0 chr3 72756114 72756424 -154768154 - AluY SINE Alu -1 310 1 243 200 93 0 chr3 72756432 72756507 -154768071 + LTR67 LTR ERVL 476 557 0 635 290 65 5 chr3 72756509 72756726 -154767852 - MIR SINE MIR -16 246 17 513 267 94 23 chr3 72756833 72757161 -154767417 + MLT1J2 LTR MaLR 38 421 -29 759 168 0 24 chr3 72757266 72757391 -154767187 - FLAM_C SINE Alu -7 126 5 494 221 36 24 chr3 72758798 72758956 -154765622 - MLT1J2 LTR MaLR -244 165 9 347 285 32 49 chr3 72758962 72759044 -154765534 - MIR3 SINE MIR -1 207 126 2377 142 46 28 chr3 72759044 72759481 -154765097 + MER65A LTR ERV1 1 445 0 347 285 32 49 chr3 72759481 72759521 -154765057 - MIR3 SINE MIR -82 126 87 626 196 31 43 chr3 72759527 72759690 -154764888 - MLT1K LTR MaLR -70 518 358 1963 123 3 11 chr3 72761043 72761353 -154763225 + AluSg SINE Alu 1 308 0 2118 118 3 13 chr3 72761708 72762022 -154762556 + AluSx SINE Alu 1 311 -1 227 311 19 29 chr3 72762114 72762217 -154762361 + MIR SINE MIR 94 195 -67 513 264 132 0 chr3 72762238 72762412 -154762166 + LTR33 LTR ERVL 23 219 -302 335 256 57 68 chr3 72762769 72762945 -154761633 - MIR SINE MIR -13 249 76 232 300 31 8 chr3 72763255 72763385 -154761193 + L1ME LINE L1 5654 5786 -335 4259 151 4 6 chr3 72763540 72764260 -154760318 - MER50 LTR ERV1 -15 719 1 22 35 0 0 chr3 72764446 72764475 -154760103 + AT_rich Low_complexity Low_complexity 1 29 0 297 299 38 43 chr3 72764484 72764668 -154759910 + L3 LINE CR1 1151 1333 -244 * 649 324 62 53 chr3 72764648 72764817 -154759761 - L2 LINE L2 -458 2856 2690 743 168 157 144 chr3 72764817 72765186 -154759392 - MLT1A2 LTR MaLR 0 374 1 649 324 62 53 chr3 72765186 72765470 -154759108 - L2 LINE L2 -624 2690 2399 1620 233 52 9 chr3 72765678 72766125 -154758453 - MLT1C LTR MaLR 0 467 2 442 299 67 10 chr3 72766137 72766435 -154758143 - L1M4 LINE L1 -1318 4828 4514 3786 169 23 16 chr3 72766436 72767142 -154757436 + MER50 LTR ERV1 1 711 -23 436 298 92 5 chr3 72767340 72767558 -154757020 - L1M4 LINE L1 -1944 4202 3966 406 276 101 55 chr3 72768790 72769007 -154755571 - MIR SINE MIR -2 260 34 1540 239 31 5 chr3 72769026 72769441 -154755137 - MER63B DNA MER1_type -10 426 1 296 294 176 0 chr3 72770158 72770243 -154754335 + MIR3 SINE MIR 55 154 -54 191 350 119 35 chr3 72770252 72770395 -154754183 + MER5A DNA MER1_type 7 161 -28 299 321 60 30 chr3 72771268 72771436 -154753142 + MLT1K LTR MaLR 184 356 -232 710 189 0 15 chr3 72771896 72772028 -154752550 - FLAM_C SINE Alu -3 130 1 651 298 46 23 chr3 72772910 72773128 -154751450 - MIR SINE MIR -27 235 13 263 380 0 20 chr3 72773208 72773308 -154751270 - L2 LINE L2 -176 3096 2999 429 284 27 27 chr3 72773571 72773719 -154750859 + MLT1H LTR MaLR 21 168 -381 359 277 29 15 chr3 72775153 72775290 -154749288 - L1MC5 LINE L1 -36 7925 7787 296 273 93 31 chr3 72776601 72776762 -154747816 - HsTC2 DNA Tc2 -9 1889 1 971 133 100 0 chr3 72776787 72776937 -154747641 - FRAM SINE Alu -7 169 5 275 194 151 0 chr3 72777033 72777126 -154747452 - L1MC/D LINE L1 -2025 5783 5677 2178 127 33 25 chr3 72777205 72777566 -154747012 + THE1B LTR MaLR 1 364 0 11439 96 10 4 chr3 72777567 72779137 -154745441 + THE1B-int LTR MaLR 2 1580 0 2328 115 30 30 chr3 72779137 72779501 -154745077 + THE1B LTR MaLR 1 364 0 1881 139 0 7 chr3 72779546 72779826 -154744752 - AluSq SINE Alu -7 306 29 277 325 56 8 chr3 72779842 72779968 -154744610 - MIR SINE MIR -115 147 16 345 262 74 10 chr3 72780591 72780717 -154743861 - MER5A DNA MER1_type -52 126 9 1028 216 9 14 chr3 72780733 72780951 -154743627 + MER58A DNA MER1_type 1 217 -7 2005 138 7 20 chr3 72781041 72781346 -154743232 + AluSx SINE Alu 1 301 -11 326 297 99 0 chr3 72781347 72781438 -154743140 - L2 LINE L2 -19 3294 3195 238 223 68 0 chr3 72781457 72781531 -154743047 + MIR SINE MIR 93 172 -90 1508 141 122 74 chr3 72781532 72781909 -154742669 - MER57A LTR ERV1 0 403 9 304 265 82 0 chr3 72782566 72782664 -154741914 - LTR16C LTR ERVL 0 491 386 474 253 100 64 chr3 72782820 72783101 -154741477 - LTR16C LTR ERVL -4 487 197 1008 262 46 69 chr3 72783704 72783946 -154740632 - LTR16A LTR ERVL -8 442 210 1547 191 3 14 chr3 72783946 72784258 -154740320 - AluJb SINE Alu 0 314 6 1008 262 46 69 chr3 72784258 72784407 -154740171 - LTR16A LTR ERVL -240 210 59 309 51 0 0 chr3 72785014 72785053 -154739525 + (TG)n Simple_repeat Simple_repeat 2 40 0 1910 278 42 53 chr3 72785224 72785995 -154738583 - L1M4 LINE L1 -1042 5104 4343 1507 203 48 23 chr3 72785995 72786356 -154738222 - MLT1A2 LTR MaLR -5 462 1 2934 233 36 45 chr3 72786356 72787002 -154737576 - L1M4 LINE L1 -1803 4343 3708 624 179 0 8 chr3 72787002 72787125 -154737453 + L1PA16 LINE L1 6036 6157 -9 2934 233 36 45 chr3 72787125 72787579 -154736999 - L1M4 LINE L1 -2438 3708 3252 1270 139 158 55 chr3 72788085 72788395 -154736183 - MER2 DNA MER2_type -2 342 1 455 205 60 17 chr3 72788515 72788632 -154735946 - L2 LINE L2 0 3313 3192 21 0 0 0 chr3 72789707 72789728 -154734850 + AT_rich Low_complexity Low_complexity 1 21 0 316 308 49 49 chr3 72790120 72790236 -154734342 + L2 LINE L2 3129 3247 -25 2237 143 6 8 chr3 72790236 72790600 -154733978 + MER47A DNA MER2_type 4 366 0 316 308 49 49 chr3 72790600 72790626 -154733952 + L2 LINE L2 3246 3271 -1 194 333 39 10 chr3 72790620 72790722 -154733856 - MIR SINE MIR 0 262 158 * 678 189 101 7 chr3 72791118 72791266 -154733312 - FRAM SINE Alu 0 166 5 416 215 44 75 chr3 72791287 72791425 -154733153 + MIR SINE MIR 31 164 -63 501 300 131 11 chr3 72791857 72792117 -154732461 - LTR16C LTR ERVL -12 479 189 639 274 126 31 chr3 72792748 72793113 -154731465 - L2 LINE L2 0 3313 2880 511 288 57 1 chr3 72793146 72793340 -154731238 + MIR SINE MIR 50 252 -10 627 109 0 0 chr3 72793671 72793763 -154730815 - MSTA LTR MaLR 0 428 337 * 1042 132 132 24 chr3 72793759 72793964 -154730614 - MSTA LTR MaLR -201 227 1 273 342 50 0 chr3 72793987 72794107 -154730471 - MLT1K LTR MaLR -342 246 121 193 278 93 56 chr3 72794238 72794346 -154730232 + MIR SINE MIR 23 134 -74 249 246 191 18 chr3 72794350 72794460 -154730118 - L2 LINE L2 0 3313 3185 345 347 105 34 chr3 72795581 72796019 -154728559 + MLT1K LTR MaLR 86 554 -34 271 309 122 29 chr3 72796051 72796190 -154728388 + L2 LINE L2 2701 2852 -462 312 294 119 8 chr3 72796351 72796477 -154728101 + MIR SINE MIR 117 256 -6 495 229 0 8 chr3 72797061 72797183 -154727395 + MER3 DNA MER1_type 48 168 -41 1300 197 111 0 chr3 72797189 72797539 -154727039 + MER3 DNA MER1_type 2236 2624 0 264 346 93 39 chr3 72797539 72797744 -154726834 + MIR SINE MIR 31 246 -16 1901 102 88 18 chr3 72797995 72798280 -154726298 - AluSg SINE Alu -5 305 1 199 350 33 17 chr3 72798327 72798447 -154726131 + MIR3 SINE MIR 60 181 -27 390 299 147 10 chr3 72798833 72799037 -154725541 - MIR SINE MIR -25 237 6 188 289 79 40 chr3 72799041 72799117 -154725461 - L2 LINE L2 -30 3283 3205 207 100 0 0 chr3 72799441 72799471 -154725107 + (TG)n Simple_repeat Simple_repeat 1 30 0 249 306 124 43 chr3 72799619 72799805 -154724773 + L2 LINE L2 3020 3220 -93 931 223 24 0 chr3 72800343 72800590 -154723988 + L1ME3A LINE L1 5879 6131 -39 477 0 0 0 chr3 72800720 72800773 -154723805 + (TG)n Simple_repeat Simple_repeat 2 54 0 300 300 138 0 chr3 72801470 72801600 -154722978 - MIR SINE MIR -88 174 27 235 255 0 98 chr3 72802024 72802126 -154722452 - L2 LINE L2 -3 3310 3219 575 185 48 14 chr3 72802598 72802744 -154721834 + L1ME2 LINE L1 5782 5932 -232 210 71 0 0 chr3 72802842 72802870 -154721708 + (T)n Simple_repeat Simple_repeat 1 28 0 464 271 96 21 chr3 72802875 72803207 -154721371 + L1MC/D LINE L1 5373 5729 -2079 24 0 0 0 chr3 72803703 72803727 -154720851 + AT_rich Low_complexity Low_complexity 1 24 0 406 275 36 57 chr3 72803967 72804160 -154720418 + L2 LINE L2 3119 3307 -6 486 258 7 60 chr3 72804525 72804676 -154719902 - MER5B DNA MER1_type -35 143 1 416 266 109 0 chr3 72804710 72804866 -154719712 + MIR SINE MIR 39 210 -52 785 296 13 30 chr3 72805169 72805399 -154719179 - MIR SINE MIR 0 262 37 195 204 0 0 chr3 72805424 72805473 -154719105 + C-rich Low_complexity Low_complexity 4 52 0 1571 156 4 11 chr3 72805479 72805748 -154718830 - AluJb SINE Alu -34 278 12 470 301 94 5 chr3 72806385 72806598 -154717980 + MIR SINE MIR 21 252 -10 241 301 68 0 chr3 72807870 72807943 -154716635 + L2 LINE L2 2976 3053 -219 1850 213 28 20 chr3 72808359 72808902 -154715676 - MER74A LTR ERVL 0 622 23 1354 167 99 8 chr3 72809164 72809427 -154715151 + AluJo SINE Alu 1 287 -25 222 91 0 0 chr3 72809427 72809460 -154715118 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 591 275 100 54 chr3 72810455 72810826 -154713752 + MLT1H LTR MaLR 138 525 -24 549 240 20 60 chr3 72811239 72811439 -154713139 - MIR SINE MIR -6 256 65 264 77 0 0 chr3 72811439 72811478 -154713100 + (CA)n Simple_repeat Simple_repeat 1 39 0 1116 267 122 28 chr3 72812096 72812890 -154711688 + L2 LINE L2 2443 3313 0 648 318 124 0 chr3 72812914 72813147 -154711431 + MIR SINE MIR 1 262 0 499 237 104 0 chr3 72813255 72813390 -154711188 - MIR SINE MIR -66 196 48 186 308 0 0 chr3 72814185 72814224 -154710354 + L2 LINE L2 3267 3305 -8 865 307 74 20 chr3 72814904 72815363 -154709215 + LTR33 LTR ERVL 3 486 -35 419 292 46 36 chr3 72815483 72815678 -154708900 + L2 LINE L2 3046 3242 -71 1272 223 7 0 chr3 72817935 72818240 -154706338 + L1ME2 LINE L1 5668 5974 -190 1133 252 23 23 chr3 72818471 72818860 -154705718 - L1MDa LINE L1 -6148 392 4 253 111 0 0 chr3 72818895 72818931 -154705647 + L2 LINE L2 3227 3262 -10 980 247 5 0 chr3 72820026 72820249 -154704329 + MER58A DNA MER1_type 1 224 0 1843 255 99 28 chr3 72820251 72820366 -154704212 + L2 LINE L2 2066 2171 -1143 630 257 11 22 chr3 72820366 72820545 -154704033 - MER5B DNA MER1_type 0 178 2 1843 255 99 28 chr3 72820545 72821045 -154703533 + L2 LINE L2 2171 2725 -589 367 279 151 17 chr3 72821047 72821219 -154703359 + L2 LINE L2 3024 3218 -95 343 242 78 55 chr3 72821198 72821326 -154703252 + MER91C DNA MER1_type 10 140 0 * 247 338 12 0 chr3 72821340 72821420 -154703158 + L2 LINE L2 3224 3304 -9 32 0 0 0 chr3 72821923 72821955 -154702623 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 72822031 72822052 -154702526 + AT_rich Low_complexity Low_complexity 1 21 0 214 28 28 28 chr3 72822119 72822155 -154702423 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 210 273 0 0 chr3 72822190 72822245 -154702333 + T-rich Low_complexity Low_complexity 1 55 0 435 264 40 103 chr3 72823948 72824221 -154700357 - Charlie8 DNA MER1_type -990 1427 74 192 281 66 15 chr3 72824328 72824402 -154700176 + MIR SINE MIR 32 111 -97 470 274 27 20 chr3 72824452 72824598 -154699980 - MIR3 SINE MIR -32 176 30 260 263 42 21 chr3 72826244 72826339 -154698239 - MIR SINE MIR -3 259 163 322 344 20 20 chr3 72826664 72826815 -154697763 - L3 LINE CR1 -604 973 823 14003 137 38 9 chr3 72827343 72829694 -154694884 - Tigger1 DNA MER2_type 0 2418 1 264 105 0 0 chr3 72829737 72829775 -154694803 + LTR67 LTR ERVL 509 546 -11 317 320 101 52 chr3 72829777 72830164 -154694414 + L2 LINE L2 2540 2945 -369 388 169 0 0 chr3 72830209 72830280 -154694298 - MER53 DNA DNA -112 77 7 225 196 0 0 chr3 72831137 72831193 -154693385 + GA-rich Low_complexity Low_complexity 2 57 0 906 310 49 47 chr3 72831193 72831686 -154692892 - MLT1K LTR MaLR -58 530 37 208 214 0 0 chr3 72832230 72832272 -154692306 - MIR SINE MIR -76 186 145 1244 119 0 0 chr3 72832284 72832452 -154692126 - AluSg/x SINE Alu 0 310 143 286 279 234 60 chr3 72832724 72832925 -154691653 + MIR SINE MIR 9 244 -18 457 263 38 15 chr3 72833232 72833365 -154691213 + MIR SINE MIR 49 184 -78 204 200 94 106 chr3 72833727 72833812 -154690766 - MIR SINE MIR -93 169 86 403 303 8 15 chr3 72833863 72833995 -154690583 + CT-rich Low_complexity Low_complexity 3 133 0 200 316 53 44 chr3 72833996 72834110 -154690468 - L2 LINE L2 -5 3267 3153 23247 135 42 17 chr3 72835298 72841495 -154683083 - L1PA8A LINE L1 -6 6440 19 11888 27 1 29 chr3 72841763 72844021 -154680557 - L1PA4 LINE L1 0 6155 3935 1595 86 36 0 chr3 72844540 72844762 -154679816 + MER30 DNA MER1_type 1 230 0 898 236 87 4 chr3 72845408 72845649 -154678929 + AluJo SINE Alu 52 312 0 584 193 24 19 chr3 72845649 72845904 -154678674 + GA-rich Low_complexity Low_complexity 1 256 0 1962 109 0 7 chr3 72846376 72846650 -154677928 - AluY SINE Alu -2 309 38 706 129 0 40 chr3 72848538 72848662 -154675916 - FRAM SINE Alu -9 167 49 1721 173 3 31 chr3 72848790 72849108 -154675470 + AluJo SINE Alu 1 309 -3 28 29 0 0 chr3 72849126 72849161 -154675417 + AT_rich Low_complexity Low_complexity 1 35 0 202 267 0 120 chr3 72849544 72849619 -154674959 + L2 LINE L2 3248 3313 0 615 253 11 44 chr3 72850048 72850230 -154674348 - FRAM SINE Alu 0 176 1 1710 154 75 28 chr3 72850420 72850778 -154673800 - THE1C LTR MaLR 0 375 1 3029 165 13 28 chr3 72850778 72851384 -154673194 - THE1C-int LTR MaLR 0 1580 984 6022 211 28 7 chr3 72851491 72852820 -154671758 - MST-int LTR MaLR -294 1357 1 2066 116 0 0 chr3 72852857 72853134 -154671444 + AluSq SINE Alu 1 277 -36 4285 202 16 8 chr3 72853134 72854149 -154670429 - L1 LINE L1 -1480 4666 3644 774 167 83 13 chr3 72854164 72854320 -154670258 - THE1C LTR MaLR -208 167 1 194 384 12 12 chr3 72854406 72854492 -154670086 - MIR3 SINE MIR -109 99 14 1472 187 90 57 chr3 72854493 72854881 -154669697 + MLT1C LTR MaLR 1 406 -61 2551 104 0 0 chr3 72854881 72855238 -154669340 - L1PA14 LINE L1 -1 6160 5804 1472 187 90 57 chr3 72855238 72855271 -154669307 + MLT1C LTR MaLR 406 436 -31 714 207 0 21 chr3 72855441 72855586 -154668992 + AluJo SINE Alu 1 142 -170 1238 290 95 44 chr3 72856519 72856950 -154667628 - L2 LINE L2 0 3313 2905 1995 150 0 29 chr3 72856950 72857264 -154667314 + AluJb SINE Alu 1 305 -7 1238 290 95 44 chr3 72857264 72857689 -154666889 - L2 LINE L2 -408 2905 2398 502 265 90 43 chr3 72857762 72857973 -154666605 + MIR SINE MIR 35 255 -7 421 192 0 0 chr3 72857980 72858053 -154666525 + Tigger3(Golem) DNA MER2_type 2 74 -2955 * 2438 158 36 2 chr3 72858049 72858487 -154666091 + Tigger3(Golem) DNA MER2_type 2577 3029 0 2242 114 7 0 chr3 72861087 72861385 -154663193 - AluSp SINE Alu -13 300 1 303 270 0 90 chr3 72861853 72861931 -154662647 + MIR SINE MIR 40 107 -155 1744 137 66 49 chr3 72861931 72862296 -154662282 + THE1C LTR MaLR 1 371 -4 303 270 0 90 chr3 72862296 72862328 -154662250 + MIR SINE MIR 107 140 -122 291 54 0 0 chr3 72862328 72862365 -154662213 + (A)n Simple_repeat Simple_repeat 1 37 0 804 258 57 0 chr3 72862522 72862731 -154661847 - MIR SINE MIR 0 262 42 425 274 95 34 chr3 72862748 72862927 -154661651 + MIR SINE MIR 3 192 -70 5343 124 11 12 chr3 72863155 72864118 -154660460 - L1PB4 LINE L1 0 6156 5193 230 338 150 23 chr3 72864329 72864595 -154659983 + L2 LINE L2 2678 2977 -337 222 118 0 0 chr3 72865256 72865290 -154659288 + (T)n Simple_repeat Simple_repeat 1 34 0 886 287 20 8 chr3 72865405 72865659 -154658919 + MIR SINE MIR 5 261 -1 365 343 54 18 chr3 72866113 72866279 -154658299 + MER5B DNA MER1_type 6 177 -1 299 262 56 16 chr3 72866292 72866418 -154658160 + MER117 DNA MER1_type 7 137 -60 200 235 44 59 chr3 72866477 72866545 -154658033 - MIR3 SINE MIR -48 160 94 243 287 35 0 chr3 72866547 72866634 -154657944 - MLT1H LTR MaLR -4 545 456 290 258 167 54 chr3 72866774 72867014 -154657564 - MLT1H LTR MaLR -264 285 19 238 310 28 14 chr3 72867026 72867097 -154657481 - MIR SINE MIR -107 101 30 274 315 174 38 chr3 72867769 72867982 -154656596 - MIR SINE MIR -1 261 20 1917 255 77 58 chr3 72869707 72869905 -154654673 + L2 LINE L2 2085 2278 -1035 2777 94 3 0 chr3 72869905 72870268 -154654310 - THE1B LTR MaLR 0 364 1 1917 255 77 58 chr3 72870268 72871181 -154653397 + L2 LINE L2 2278 3309 -4 22 56 0 0 chr3 72871181 72871217 -154653361 + AT_rich Low_complexity Low_complexity 1 36 0 308 337 0 0 chr3 72871572 72871664 -154652914 - MIR SINE MIR -70 138 47 293 288 25 12 chr3 72871740 72871820 -154652758 + MIR SINE MIR 70 150 -58 2661 174 26 16 chr3 72872510 72873015 -154651563 + LTR53 LTR ERVL 7 516 -3 1650 182 10 13 chr3 72873504 72873817 -154650761 + AluJb SINE Alu 1 312 0 1360 252 60 67 chr3 72873932 72874468 -154650110 - MLT1F1 LTR MaLR 0 567 11 438 288 34 20 chr3 72874519 72874862 -154649716 + LTR16C LTR ERVL 88 478 -13 222 291 64 36 chr3 72874957 72875067 -154649511 - L2 LINE L2 -1 3312 3200 334 326 23 23 chr3 72875604 72875733 -154648845 + MIR SINE MIR 20 148 -114 952 124 14 0 chr3 72875743 72875888 -154648690 + MER46A DNA MER2_type 90 236 0 282 342 71 26 chr3 72876269 72876424 -154648154 + MLT1K LTR MaLR 18 179 -409 22 0 0 0 chr3 72876647 72876669 -154647909 + AT_rich Low_complexity Low_complexity 1 22 0 841 256 43 31 chr3 72876744 72876998 -154647580 - MIR SINE MIR -1 261 5 410 279 153 5 chr3 72877921 72878111 -154646467 + MIR SINE MIR 31 248 -14 448 217 95 8 chr3 72878139 72878270 -154646308 + MIR SINE MIR 44 185 -63 193 328 30 0 chr3 72878345 72878412 -154646166 + MIR SINE MIR 194 262 0 550 305 125 30 chr3 72878983 72879344 -154645234 - L2 LINE L2 -676 2638 2244 1792 144 0 7 chr3 72879403 72879680 -154644898 + AluSx SINE Alu 1 275 -37 26 50 0 0 chr3 72879680 72879720 -154644858 + AT_rich Low_complexity Low_complexity 1 40 0 236 304 88 20 chr3 72879958 72880060 -154644518 - MIR SINE MIR -132 130 22 346 259 0 35 chr3 72880539 72880655 -154643923 - MLT1K LTR MaLR -70 518 407 413 248 85 39 chr3 72881586 72881739 -154642839 + Charlie8 DNA MER1_type 37 196 -2221 881 191 12 6 chr3 72882070 72882232 -154642346 + AluJb SINE Alu 148 310 -2 397 261 207 10 chr3 72882306 72882509 -154642069 - MLT1L LTR MaLR -372 243 1 187 210 48 48 chr3 72882695 72882757 -154641821 + MIR SINE MIR 37 98 -110 393 364 143 10 chr3 72883529 72883738 -154640840 + MIR SINE MIR 8 244 -18 268 177 6 0 chr3 72883805 72883864 -154640714 - MLT1F LTR MaLR -17 525 474 555 258 147 36 chr3 72885625 72885850 -154638728 - MIR SINE MIR 0 262 13 312 91 0 0 chr3 72887496 72887540 -154637038 + (CA)n Simple_repeat Simple_repeat 2 45 0 831 281 133 9 chr3 72888380 72888807 -154635771 - LTR16C LTR ERVL -8 483 4 417 271 94 50 chr3 72889017 72889198 -154635380 + MER5A DNA MER1_type 1 189 0 1416 156 35 0 chr3 72889327 72889609 -154634969 - L1MA4 LINE L1 -6 6294 6003 243 257 14 54 chr3 72889609 72889683 -154634895 + L2 LINE L2 3243 3313 0 627 272 40 67 chr3 72890007 72890334 -154634244 + MLT1K LTR MaLR 155 472 -116 234 333 0 21 chr3 72890469 72890562 -154634016 + MIR SINE MIR 49 139 -123 894 301 88 40 chr3 72890925 72891493 -154633085 + MLT1G LTR MaLR 1 590 0 180 304 63 13 chr3 72891669 72891748 -154632830 - MIR3 SINE MIR -19 189 107 420 288 95 29 chr3 72891828 72892071 -154632507 + MIR SINE MIR 3 261 -1 551 285 132 9 chr3 72892187 72892415 -154632163 - MIR SINE MIR -6 256 1 624 226 124 5 chr3 72892935 72893097 -154631481 + MER5A DNA MER1_type 6 189 0 330 297 330 8 chr3 72893103 72893457 -154631121 - L2 LINE L2 -13 3300 2833 * 376 319 71 52 chr3 72893454 72893666 -154630912 - L2 LINE L2 -2 3311 3105 1174 202 0 22 chr3 72893666 72893894 -154630684 + MER58A DNA MER1_type 2 224 0 376 319 71 52 chr3 72893894 72894107 -154630471 - L2 LINE L2 -208 3105 2690 362 217 0 0 chr3 72894466 72894535 -154630043 - L2 LINE L2 0 3313 3245 21 0 0 0 chr3 72894668 72894689 -154629889 + AT_rich Low_complexity Low_complexity 1 21 0 404 319 128 5 chr3 72894820 72895008 -154629570 - MIR SINE MIR -21 241 31 198 0 0 0 chr3 72895064 72895086 -154629492 + (A)n Simple_repeat Simple_repeat 1 22 0 296 329 86 33 chr3 72895444 72895596 -154628982 - MIR SINE MIR -5 257 98 851 207 61 0 chr3 72896260 72896424 -154628154 + MER5A DNA MER1_type 1 174 -15 314 308 31 15 chr3 72896475 72896605 -154627973 + L2 LINE L2 3182 3313 0 240 338 7 55 chr3 72896900 72897045 -154627533 + L3b LINE CR1 1257 1394 -189 438 220 22 0 chr3 72897095 72897186 -154627392 - L2 LINE L2 0 3272 3180 208 265 73 15 chr3 72897274 72897342 -154627236 - L2 LINE L2 -211 3061 2990 219 318 45 11 chr3 72898268 72898356 -154626222 + L2 LINE L2 3193 3283 -30 219 186 0 0 chr3 72898410 72898453 -154626125 + GA-rich Low_complexity Low_complexity 2 44 0 332 167 0 0 chr3 72898473 72898521 -154626057 + MER5B DNA MER1_type 1 48 -130 2236 260 41 19 chr3 72898598 72900239 -154624339 - L1ME3A LINE L1 -113 6057 4379 279 0 0 0 chr3 72901276 72901307 -154623271 + (TG)n Simple_repeat Simple_repeat 2 32 0 221 128 0 64 chr3 72901817 72901864 -154622714 - L2 LINE L2 -4 3309 3266 840 232 17 46 chr3 72902117 72902354 -154622224 + MIR SINE MIR 14 243 -19 527 233 37 25 chr3 72902408 72902571 -154622007 - MER97b DNA MER1_type? -874 179 15 637 248 7 7 chr3 72902691 72902840 -154621738 - MIR SINE MIR -3 259 111 960 184 11 5 chr3 72902840 72903025 -154621553 - MER20 DNA MER1_type 0 219 34 206 352 14 0 chr3 72903086 72903157 -154621421 - MIR SINE MIR -150 112 41 634 244 158 6 chr3 72903190 72903354 -154621224 + MER5A DNA MER1_type 1 189 0 618 202 10 133 chr3 72903362 72903565 -154621013 + MER5B DNA MER1_type 1 178 0 295 283 61 10 chr3 72903624 72903723 -154620855 + MIR3 SINE MIR 89 192 -16 234 314 29 0 chr3 72903774 72903844 -154620734 + MIR SINE MIR 85 156 -106 222 322 100 0 chr3 72904546 72904636 -154619942 - MER5A DNA MER1_type 0 189 91 304 282 0 13 chr3 72904756 72904834 -154619744 + MIR SINE MIR 81 157 -105 209 259 17 17 chr3 72904922 72904980 -154619598 + L2 LINE L2 3215 3272 0 2240 190 45 24 chr3 72905470 72906008 -154618570 + L1MD2 LINE L1 5794 6342 -17 232 246 31 0 chr3 72906009 72906074 -154618504 + (TA)n Simple_repeat Simple_repeat 1 67 0 427 304 45 4 chr3 72906244 72906487 -154618091 + L1ME3A LINE L1 5685 5937 -233 397 187 388 22 chr3 72907108 72907242 -154617336 - MIR SINE MIR -44 218 36 6759 120 13 5 chr3 72907424 72909333 -154615245 - L1MA2 LINE L1 0 6304 4377 193 358 12 12 chr3 72909596 72909677 -154614901 + MER5A DNA MER1_type 3 83 -106 509 253 50 45 chr3 72909955 72910153 -154614425 - L2 LINE L2 0 3313 3115 207 108 27 0 chr3 72910263 72910300 -154614278 + (TAGA)n Simple_repeat Simple_repeat 1 38 0 1742 136 6 65 chr3 72910782 72911105 -154613473 - AluJo SINE Alu -1 311 8 193 317 114 54 chr3 72911254 72911421 -154613157 + MIR SINE MIR 12 188 -74 203 338 153 28 chr3 72912273 72912489 -154612089 - L3 LINE CR1 -12 1565 1323 310 294 73 7 chr3 72912504 72912640 -154611938 + MIR SINE MIR 73 217 -45 382 279 25 35 chr3 72913327 72913528 -154611050 - L1ME LINE L1 -363 5758 5560 189 318 0 45 chr3 72914062 72914128 -154610450 + L2 LINE L2 3234 3296 -17 234 62 0 0 chr3 72914737 72914769 -154609809 + (A)n Simple_repeat Simple_repeat 1 32 0 708 280 59 8 chr3 72916333 72916569 -154608009 - MIR SINE MIR -14 248 1 301 322 129 43 chr3 72917244 72917617 -154606961 - MLT1K LTR MaLR -24 564 160 316 256 44 11 chr3 72918266 72918356 -154606222 + L2 LINE L2 3189 3281 -32 5078 103 9 12 chr3 72919700 72920504 -154604074 - L1PA13 LINE L1 -4 6159 5359 542 314 71 21 chr3 72920821 72921060 -154603518 - MIR SINE MIR 0 262 12 5055 128 16 6 chr3 72923049 72924145 -154600433 - L1PB2 LINE L1 -117 6034 4929 30 69 0 0 chr3 72924187 72924245 -154600333 + AT_rich Low_complexity Low_complexity 1 58 0 260 361 56 42 chr3 72925213 72925357 -154599221 + MIR3 SINE MIR 11 156 -52 391 274 92 52 chr3 72925366 72925691 -154598887 - L1MCc LINE L1 -4890 1533 1196 316 339 36 51 chr3 72926126 72926459 -154598119 - L1MCc LINE L1 -5969 454 127 239 312 218 10 chr3 72927626 72927828 -154596750 + MIR SINE MIR 18 261 -1 265 256 56 11 chr3 72928492 72928582 -154595996 + MIR SINE MIR 113 206 -56 271 339 8 51 chr3 72929378 72929496 -154595082 - MIR3 SINE MIR -41 167 55 284 305 113 57 chr3 72930369 72930510 -154594068 + MIR3 SINE MIR 20 168 -40 351 329 36 7 chr3 72932371 72932508 -154592070 - MIR SINE MIR -40 222 82 1902 146 0 39 chr3 72932513 72932821 -154591757 - AluJo SINE Alu -16 296 1 726 279 6 6 chr3 72932872 72933044 -154591534 - MER5A DNA MER1_type 0 189 18 705 226 89 65 chr3 72933523 72933859 -154590719 + L1ME3A LINE L1 5807 6150 -20 330 248 128 0 chr3 72934098 72934223 -154590355 + L1ME4a LINE L1 5967 6107 -14 537 292 23 12 chr3 72934983 72935154 -154589424 + MIR SINE MIR 30 202 -60 661 218 36 6 chr3 72935154 72935319 -154589259 + LTR41 LTR ERVL 1 170 -603 267 266 53 11 chr3 72935834 72935928 -154588650 + MER58B DNA MER1_type 12 109 -232 216 97 0 0 chr3 72935929 72935960 -154588618 + (GGA)n Simple_repeat Simple_repeat 2 32 0 255 220 17 0 chr3 72935998 72936057 -154588521 + MER58B DNA MER1_type 267 326 -15 401 198 176 0 chr3 72936059 72936150 -154588428 + MER5A DNA MER1_type 83 189 0 903 239 24 5 chr3 72936496 72936705 -154587873 - MER20 DNA MER1_type -4 215 3 227 69 0 0 chr3 72937167 72937196 -154587382 - U2 snRNA snRNA -154 34 6 1691 201 3 16 chr3 72937419 72937764 -154586814 - AluJb SINE Alu 0 343 3 440 316 52 37 chr3 72938483 72938752 -154585826 + LTR16A LTR ERVL 33 305 -145 416 248 14 62 chr3 72938845 72938990 -154585588 - L2 LINE L2 -17 3296 3159 603 344 6 0 chr3 72939819 72940002 -154584576 - MIR SINE MIR 0 262 79 300 210 145 0 chr3 72941123 72941185 -154583393 - MER91 DNA MER1_type 0 140 70 354 302 44 103 chr3 72941257 72941509 -154583069 - L2 LINE L2 -5 3267 3031 1847 122 0 23 chr3 72941567 72941830 -154582748 + AluSx SINE Alu 40 296 -16 2823 199 25 66 chr3 72942005 72942134 -154582444 + MER72 LTR ERV1 1 134 -588 1898 117 85 51 chr3 72942134 72942486 -154582092 - THE1B LTR MaLR 0 364 1 2823 199 25 66 chr3 72942486 72943109 -154581469 + MER72 LTR ERV1 134 722 0 382 218 15 53 chr3 72943148 72943253 -154581325 - MER5A DNA MER1_type -83 106 4 219 340 64 0 chr3 72943340 72943434 -154581144 - L2 LINE L2 -635 2679 2580 193 250 66 88 chr3 72943849 72943985 -154580593 + MER5A DNA MER1_type 35 167 -22 517 216 230 0 chr3 72944478 72944617 -154579961 + MER5B DNA MER1_type 4 174 -4 426 270 0 8 chr3 72944642 72944768 -154579810 + MER69A DNA AcHobo 6 130 -47 696 299 36 25 chr3 72944769 72945047 -154579531 - LTR16B LTR ERVL 0 464 184 1893 156 0 13 chr3 72945073 72945375 -154579203 + AluJb SINE Alu 13 310 -2 388 308 118 72 chr3 72945939 72946286 -154578292 - L2 LINE L2 -2 3311 2949 557 300 61 77 chr3 72946339 72946652 -154577926 - L2 LINE L2 -427 2887 2580 28 48 0 0 chr3 72946840 72946882 -154577696 + AT_rich Low_complexity Low_complexity 1 42 0 218 318 0 0 chr3 72946959 72947025 -154577553 - MIR SINE MIR -13 249 184 181 312 119 28 chr3 72947010 72947119 -154577459 + L2 LINE L2 3006 3124 -189 * 206 396 14 22 chr3 72947211 72947350 -154577228 - MIR SINE MIR -123 139 2 262 237 132 53 chr3 72947800 72947914 -154576664 - MIR SINE MIR -50 212 90 426 340 111 16 chr3 72948596 72948840 -154575738 - L2 LINE L2 -202 3070 2804 204 317 89 77 chr3 72948820 72949079 -154575499 + L3 LINE CR1 1315 1576 -1 * 386 176 165 0 chr3 72949365 72949456 -154575122 + L2 LINE L2 3208 3313 0 700 258 46 4 chr3 72950346 72950722 -154573856 + LTR16A LTR ERVL 17 450 0 2309 44 0 0 chr3 72951031 72951302 -154573276 - AluY SINE Alu -1 310 40 321 163 0 0 chr3 72951427 72951476 -154573102 - MIR SINE MIR -108 154 106 190 283 75 0 chr3 72951564 72951617 -154572961 + L3b LINE CR1 1524 1580 -3 217 380 21 31 chr3 72951751 72951920 -154572658 - MIR3 SINE MIR -62 146 7 1884 244 81 15 chr3 72951943 72952475 -154572103 - MLT1F1 LTR MaLR 0 567 1 595 314 193 14 chr3 72952692 72953049 -154571529 + MLT1K LTR MaLR 5 425 -163 210 222 0 0 chr3 72953050 72953095 -154571483 + GA-rich Low_complexity Low_complexity 1 45 0 258 310 143 20 chr3 72953265 72953468 -154571110 - MIR SINE MIR -26 236 9 314 308 25 25 chr3 72953552 72953672 -154570906 - MIR SINE MIR -37 225 106 294 246 0 0 chr3 72953808 72953865 -154570713 - MER81 DNA DNA 0 114 58 297 221 215 47 chr3 72954243 72954421 -154570157 + MIR3 SINE MIR 6 204 -55 1727 200 119 24 chr3 72954600 72955061 -154569517 + MLT1D LTR MaLR 1 505 0 2204 109 3 0 chr3 72955295 72955589 -154568989 + AluSx SINE Alu 1 295 -17 2288 98 0 7 chr3 72955592 72955899 -154568679 + AluSc SINE Alu 1 305 -4 475 370 28 4 chr3 72956082 72956333 -154568245 + MIR SINE MIR 3 259 -3 213 289 67 0 chr3 72956798 72956902 -154567676 + MIR SINE MIR 116 226 -36 294 282 77 42 chr3 72956947 72957121 -154567457 + MIR SINE MIR 34 213 -49 513 292 129 14 chr3 72957473 72957682 -154566896 - MIR SINE MIR -29 233 1 364 324 35 0 chr3 72958004 72958149 -154566429 - MIR SINE MIR -8 254 105 1996 302 87 13 chr3 72958230 72959136 -154565442 + L1M3a LINE L1 18 990 -4965 1689 161 37 3 chr3 72959253 72959633 -154564945 + L1MA9 LINE L1 4244 4636 -1510 1922 174 45 19 chr3 72959633 72959896 -154564682 + L1MA9 LINE L1 5873 6161 -151 306 0 0 0 chr3 72959896 72959930 -154564648 + (CA)n Simple_repeat Simple_repeat 1 34 0 1922 174 45 19 chr3 72959930 72960081 -154564497 + L1MA9 LINE L1 6161 6307 -5 368 208 31 0 chr3 72960104 72960200 -154564378 + MER103 DNA DNA 64 162 -4 21 36 0 0 chr3 72960832 72960860 -154563718 + AT_rich Low_complexity Low_complexity 1 28 0 564 314 98 41 chr3 72961147 72961883 -154562695 + HAL1 LINE L1 267 1044 -1463 36421 35 28 2 chr3 72961885 72966585 -154557993 + L1P LINE L1 1 4822 -1324 645 269 71 52 chr3 72966845 72967153 -154557425 - LTR16C LTR ERVL -3 488 175 1860 194 40 33 chr3 72967255 72967708 -154556870 - MLT1C LTR MaLR -6 461 6 305 297 119 25 chr3 72967777 72967895 -154556683 + HAL1 LINE L1 1273 1401 -1106 1980 133 49 62 chr3 72967896 72968301 -154556277 + MER65A LTR ERV1 2 401 -44 281 106 96 0 chr3 72968324 72968428 -154556150 + (TA)n Simple_repeat Simple_repeat 1 114 0 27 0 0 0 chr3 72968510 72968537 -154556041 + AT_rich Low_complexity Low_complexity 1 27 0 226 126 92 23 chr3 72968566 72968653 -154555925 + (TTAAA)n Simple_repeat Simple_repeat 5 97 0 1576 264 103 31 chr3 72968706 72968782 -154555796 + HAL1 LINE L1 1396 1465 -1042 414 0 0 0 chr3 72968782 72968828 -154555750 + (CA)n Simple_repeat Simple_repeat 1 46 0 1576 264 103 31 chr3 72968828 72969684 -154554894 + HAL1 LINE L1 1465 2395 -112 195 348 109 7 chr3 72970007 72970145 -154554433 + L2 LINE L2 2776 2927 -387 774 268 111 54 chr3 72970510 72970568 -154554010 - MLT1G1 LTR MaLR 0 595 542 2729 189 21 37 chr3 72970568 72971130 -154553448 + MLT2B3 LTR ERVL 1 553 -1 774 268 111 54 chr3 72971130 72971628 -154552950 - MLT1G1 LTR MaLR -53 542 7 2102 121 3 0 chr3 72972172 72972475 -154552103 + AluSq SINE Alu 1 304 0 309 271 28 46 chr3 72972852 72972992 -154551586 + MIR SINE MIR 40 181 -27 349 315 46 46 chr3 72973126 72973342 -154551236 - L2 LINE L2 0 3313 3098 601 255 138 5 chr3 72973516 72973712 -154550866 - L2 LINE L2 -515 2799 2578 572 315 180 7 chr3 72973941 72974246 -154550332 - L2 LINE L2 -742 2572 2215 200 182 114 0 chr3 72974972 72975016 -154549562 + MIR SINE MIR 112 160 -102 1815 130 3 0 chr3 72975572 72975865 -154548713 - L1MA6 LINE L1 0 6300 6007 186 231 26 0 chr3 72976035 72976074 -154548504 - MIR SINE MIR -76 132 93 204 40 0 0 chr3 72976233 72976258 -154548320 + (TG)n Simple_repeat Simple_repeat 2 26 0 231 220 17 17 chr3 72976319 72976378 -154548200 + MLT1K LTR MaLR 1 59 -529 929 243 10 0 chr3 72976635 72976837 -154547741 - MER58A DNA MER1_type -10 214 11 312 271 31 31 chr3 72976878 72977007 -154547571 + LTR67 LTR ERVL 429 557 0 16914 26 6 0 chr3 72977391 72980150 -154544428 + L1PA2 LINE L1 3392 6155 0 934 240 16 0 chr3 72980181 72980423 -154544155 + L1ME3A LINE L1 5812 6057 -113 332 167 0 0 chr3 72980500 72980548 -154544030 - MER5B DNA MER1_type -130 48 1 219 186 0 0 chr3 72980568 72980611 -154543967 + CT-rich Low_complexity Low_complexity 2 44 0 219 318 45 11 chr3 72980665 72980753 -154543825 - L2 LINE L2 -30 3283 3193 412 57 0 0 chr3 72981030 72981083 -154543495 - Alu SINE Alu -15 296 244 523 292 41 12 chr3 72981194 72981365 -154543213 - MIR SINE MIR -73 189 14 508 319 19 38 chr3 72981758 72982024 -154542554 + L2 LINE L2 2147 2407 -907 933 234 133 13 chr3 72982048 72982643 -154541935 - LTR50 LTR ERVL 0 795 42 338 344 33 33 chr3 72982676 72982920 -154541658 + L2 LINE L2 2422 2665 -649 533 227 36 0 chr3 72982923 72983033 -154541545 - L2 LINE L2 0 3313 3200 390 188 0 0 chr3 72983096 72983165 -154541413 + Tigger2 DNA MER2_type 1 69 -2649 * 2366 143 39 9 chr3 72983149 72983588 -154540990 + Tigger2 DNA MER2_type 2267 2718 0 521 288 118 60 chr3 72983606 72984156 -154540422 + L2 LINE L2 2731 3312 -1 422 94 0 16 chr3 72984366 72984430 -154540148 + Alu SINE Alu 14 76 -235 273 344 25 0 chr3 72984565 72984687 -154539891 + MIR SINE MIR 128 252 -10 25 0 0 0 chr3 72984900 72984925 -154539653 + AT_rich Low_complexity Low_complexity 1 25 0 506 185 0 0 chr3 72984928 72985009 -154539569 - AluSg/x SINE Alu -25 287 207 41016 29 22 1 chr3 72985351 72991357 -154533221 + L1PA2 LINE L1 22 6155 0 210 37 0 0 chr3 72991376 72991403 -154533175 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 339 320 69 40 chr3 72991905 72992080 -154532498 - MIR3 SINE MIR -7 201 22 3355 99 4 6 chr3 72992228 72992722 -154531856 + L1PA8 LINE L1 5680 6172 0 554 213 118 41 chr3 72992834 72993055 -154531523 - MER113 DNA MER1_type? -211 310 73 302 239 130 0 chr3 72993092 72993184 -154531394 - MIR SINE MIR -61 201 98 350 367 106 5 chr3 72993414 72993613 -154530965 - MIR SINE MIR -24 238 20 181 279 73 44 chr3 72994239 72994307 -154530271 - L2 LINE L2 -19 3294 3225 228 286 152 55 chr3 72994349 72994421 -154530157 + L2 LINE L2 3075 3139 -174 252 0 0 0 chr3 72994421 72994449 -154530129 + (TG)n Simple_repeat Simple_repeat 2 29 0 228 286 152 55 chr3 72994449 72994593 -154529985 + L2 LINE L2 3139 3312 -1 250 345 17 6 chr3 72995484 72995658 -154528920 + CT-rich Low_complexity Low_complexity 1 176 0 1715 178 7 10 chr3 72995875 72996173 -154528405 + AluJb SINE Alu 1 297 -15 265 316 51 0 chr3 72996632 72996749 -154527829 + MIR3 SINE MIR 78 200 -8 304 279 81 0 chr3 72997370 72997456 -154527122 - L2 LINE L2 -1 3312 3220 6249 46 16 1 chr3 72997703 72998509 -154526069 - L1PA8 LINE L1 -25 6147 5330 473 312 87 68 chr3 72998970 72999093 -154525485 - LTR67 LTR ERVL 0 557 438 5580 120 5 27 chr3 72999093 73000013 -154524565 + L1PA15 LINE L1 5254 6161 -4 473 312 87 68 chr3 73000013 73000421 -154524157 - LTR67 LTR ERVL -119 438 16 378 171 0 14 chr3 73000536 73000606 -154523972 + Tigger2 DNA MER2_type 1 69 -2649 * 2563 139 33 0 chr3 73000604 73001029 -154523549 + Tigger2 DNA MER2_type 2280 2718 0 239 264 157 84 chr3 73001114 73001292 -154523286 + Charlie8 DNA MER1_type 29 219 -2198 489 346 6 0 chr3 73001513 73001672 -154522906 + MIR3 SINE MIR 30 189 -19 1435 169 73 0 chr3 73001857 73002051 -154522527 - L1MD2 LINE L1 -10 6349 6128 333 0 0 0 chr3 73002051 73002088 -154522490 + (TG)n Simple_repeat Simple_repeat 2 38 0 1435 169 73 0 chr3 73002088 73002166 -154522412 - L1MD2 LINE L1 -231 6128 6057 195 278 135 32 chr3 73003008 73003134 -154521444 + MIR3 SINE MIR 15 153 -55 199 305 191 43 chr3 73003170 73003311 -154521267 + MIR SINE MIR 22 183 -79 425 304 54 22 chr3 73003758 73003942 -154520636 - MIR SINE MIR -1 261 72 411 325 4 68 chr3 73004096 73004330 -154520248 - L2 LINE L2 -212 3060 2842 591 292 46 43 chr3 73004399 73004728 -154519850 + MER102b DNA MER1_type 1 330 -11 1873 95 63 4 chr3 73004874 73005151 -154519427 + AluSc SINE Alu 11 302 0 677 204 83 0 chr3 73005167 73005324 -154519254 - MER3 DNA MER1_type 0 209 40 828 65 0 0 chr3 73005333 73005440 -154519138 + L1PA5 LINE L1 6046 6152 -2 21 0 0 0 chr3 73005440 73005461 -154519117 + AT_rich Low_complexity Low_complexity 1 21 0 396 292 26 19 chr3 73005461 73005615 -154518963 + L1ME LINE L1 4906 5060 -1086 1763 215 50 34 chr3 73005966 73006463 -154518115 - MLT1D LTR MaLR 0 505 1 355 279 112 0 chr3 73006493 73006654 -154517924 + L1ME LINE L1 5621 5799 -322 2275 281 41 53 chr3 73007666 73008443 -154516135 + L1M3b LINE L1 660 1427 -4854 889 135 0 0 chr3 73008451 73008584 -154515994 + AluSc SINE Alu 171 303 -6 577 138 11 98 chr3 73008584 73008612 -154515966 + L1M3b LINE L1 1440 1469 -4812 2133 125 7 0 chr3 73008612 73008908 -154515670 + AluSq SINE Alu 2 299 -14 577 138 11 98 chr3 73008908 73009053 -154515525 + L1M3b LINE L1 1469 1598 -4683 * 659 97 245 0 chr3 73009052 73009207 -154515371 + L1MA4 LINE L1 6097 6289 -11 1884 273 60 16 chr3 73009219 73010182 -154514396 + L1M1 LINE L1 1199 2308 -4074 545 214 100 25 chr3 73010164 73010445 -154514133 + L1M1 LINE L1 3230 3531 -2851 * 1014 167 0 32 chr3 73010445 73010631 -154513947 + AluSg/x SINE Alu 112 291 -19 7587 182 14 5 chr3 73010631 73012148 -154512430 + L1M1 LINE L1 3523 5053 -1329 910 243 42 11 chr3 73012146 73012430 -154512148 + L1MA7 LINE L1 5999 6291 0 * 198 0 0 0 chr3 73012572 73012594 -154511984 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 281 286 82 54 chr3 73013005 73013152 -154511426 + MER5A DNA MER1_type 17 167 -22 21 0 0 0 chr3 73013303 73013324 -154511254 + AT_rich Low_complexity Low_complexity 1 21 0 599 306 45 24 chr3 73013466 73013796 -154510782 + L1ME4a LINE L1 5546 5882 -239 186 216 0 0 chr3 73014049 73014086 -154510492 - MER5B DNA MER1_type -1 177 141 318 93 0 0 chr3 73014095 73014138 -154510440 - L1PA5 LINE L1 -215 5940 5898 1720 52 0 0 chr3 73014138 73014349 -154510229 + L1PA5 LINE L1 5934 6146 -8 516 237 23 38 chr3 73014374 73014505 -154510073 + MER5B DNA MER1_type 46 174 -4 783 176 14 0 chr3 73015421 73015563 -154509015 - BC200 scRNA scRNA -56 144 1 197 301 14 27 chr3 73016153 73016226 -154508352 + L2 LINE L2 3242 3313 0 2280 162 3 0 chr3 73016819 73017171 -154507407 - MLT1A1 LTR MaLR 0 365 13 475 104 39 0 chr3 73017486 73017563 -154507015 - MADE1 DNA Mariner 0 80 1 264 30 0 0 chr3 73017588 73017621 -154506957 + (TG)n Simple_repeat Simple_repeat 1 33 0 276 220 170 50 chr3 73018198 73018357 -154506221 - L2 LINE L2 -529 2785 2608 3334 83 0 0 chr3 73018776 73019224 -154505354 - L1PA7 LINE L1 -1521 4625 4178 6910 65 0 2 chr3 73019227 73020743 -154503835 + L1PA7 LINE L1 4629 6143 -11 327 25 0 0 chr3 73021011 73021051 -154503527 + (CA)n Simple_repeat Simple_repeat 1 40 0 2162 109 26 3 chr3 73021325 73021627 -154502951 - AluSp SINE Alu -2 311 3 13530 181 32 24 chr3 73021795 73024927 -154499651 - L1MA5 LINE L1 -1 6299 3159 285 51 0 0 chr3 73024927 73024966 -154499612 + (TG)n Simple_repeat Simple_repeat 2 40 0 13530 181 32 24 chr3 73024966 73026010 -154498568 - L1MA5 LINE L1 -3141 3159 2125 559 240 142 33 chr3 73026028 73026211 -154498367 - MLT1F1 LTR MaLR -188 379 177 396 138 0 0 chr3 73026211 73026276 -154498302 + (GA)n Simple_repeat Simple_repeat 2 66 0 331 268 67 60 chr3 73026290 73026444 -154498134 - MLT1E1 LTR MaLR -357 185 6 342 45 0 0 chr3 73026455 73026499 -154498079 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 479 317 31 6 chr3 73026753 73026914 -154497664 - MIR SINE MIR -90 172 8 319 352 0 23 chr3 73027154 73027330 -154497248 + (TCCA)n Simple_repeat Simple_repeat 4 175 0 189 94 0 0 chr3 73028214 73028246 -154496332 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 232 323 0 20 chr3 73028309 73028333 -154496245 + CT-rich Low_complexity Low_complexity 3 26 -73 2217 147 25 0 chr3 73028333 73028688 -154495890 - THE1B LTR MaLR 0 364 1 232 323 0 20 chr3 73028688 73028762 -154495816 + CT-rich Low_complexity Low_complexity 26 99 0 242 205 134 45 chr3 73028904 73029016 -154495562 + MIR SINE MIR 141 262 0 1524 203 0 38 chr3 73030912 73031228 -154493350 - AluJo SINE Alu -8 304 1 248 220 0 0 chr3 73031941 73031991 -154492587 - MER33 DNA MER1_type -2 322 273 1612 180 11 11 chr3 73032001 73032285 -154492293 - AluJb SINE Alu -26 286 3 2385 96 3 3 chr3 73032300 73032613 -154491965 - AluSp SINE Alu 0 313 1 811 105 134 43 chr3 73032613 73032822 -154491756 - MER33 DNA MER1_type -40 284 57 1429 237 142 2 chr3 73033617 73034039 -154490539 - L1ME1 LINE L1 -3 6163 5683 1179 117 0 0 chr3 73034134 73034314 -154490264 + (TA)n Simple_repeat Simple_repeat 1 180 0 228 284 23 0 chr3 73034335 73034423 -154490155 - L1MC4 LINE L1 -1339 6703 6614 238 93 93 0 chr3 73034342 73034396 -154490182 + L1MCa LINE L1 2006 2064 -4362 308 189 14 0 chr3 73034526 73034600 -154489978 + (TA)n Simple_repeat Simple_repeat 2 76 0 551 289 47 52 chr3 73035493 73035704 -154488874 - MIR SINE MIR 0 262 53 289 362 81 11 chr3 73036114 73036288 -154488290 - MIR SINE MIR -19 243 58 429 333 23 17 chr3 73037682 73037859 -154486719 + MIR3 SINE MIR 19 196 -12 223 284 181 19 chr3 73038022 73038177 -154486401 + L3b LINE CR1 1208 1387 -196 364 256 0 60 chr3 73038348 73038465 -154486113 + MER103 DNA DNA 55 164 -2 435 92 0 0 chr3 73038648 73038713 -154485865 + (TA)n Simple_repeat Simple_repeat 1 65 0 197 363 25 0 chr3 73039201 73039281 -154485297 + L2 LINE L2 2644 2725 -589 2083 124 0 10 chr3 73039326 73039632 -154484946 + AluSq SINE Alu 1 303 -10 1271 213 105 18 chr3 73039750 73040188 -154484390 - MLT1C LTR MaLR -2 503 1 2198 109 7 13 chr3 73040296 73040599 -154483979 - AluSx SINE Alu -11 301 1 234 295 98 36 chr3 73040758 73040870 -154483708 + L2 LINE L2 3112 3230 -42 236 326 95 0 chr3 73041750 73041845 -154482733 + MER5A DNA MER1_type 85 188 -1 659 140 0 0 chr3 73041942 73042042 -154482536 + AluS SINE Alu 1 100 -212 971 100 0 0 chr3 73042042 73042196 -154482382 + AluYa5 SINE Alu 152 305 0 24 32 0 0 chr3 73043605 73043636 -154480942 + AT_rich Low_complexity Low_complexity 1 31 0 267 54 0 0 chr3 73043646 73043683 -154480895 + (CA)n Simple_repeat Simple_repeat 2 38 0 233 266 16 0 chr3 73044268 73044332 -154480246 - MER103 DNA DNA 0 166 102 293 275 88 0 chr3 73044345 73044436 -154480142 + L2 LINE L2 3153 3251 -21 310 231 33 22 chr3 73044451 73044542 -154480036 - MER103 DNA DNA -72 94 3 1657 83 9 0 chr3 73044727 73044945 -154479633 + AluY SINE Alu 80 299 -12 271 250 170 9 chr3 73045460 73045572 -154479006 + L2 LINE L2 3180 3309 -4 319 179 0 24 chr3 73046364 73046448 -154478130 + CT-rich Low_complexity Low_complexity 3 84 0 2180 106 7 0 chr3 73046686 73046978 -154477600 - AluSx SINE Alu -18 294 1 42947 29 22 1 chr3 73047320 73053326 -154471252 - L1PA2 LINE L1 0 6155 22 501 185 0 0 chr3 73053668 73053749 -154470829 + AluSg/x SINE Alu 205 285 -25 25 0 0 0 chr3 73053752 73053777 -154470801 + AT_rich Low_complexity Low_complexity 1 25 0 274 344 25 0 chr3 73053990 73054112 -154470466 - MIR SINE MIR -10 252 128 414 94 0 16 chr3 73054247 73054311 -154470267 - Alu SINE Alu -234 76 14 510 288 118 60 chr3 73054521 73055071 -154469507 - L2 LINE L2 -1 3312 2731 2519 143 39 9 chr3 73055089 73055528 -154469050 - Tigger2 DNA MER2_type 0 2718 2267 414 188 0 0 chr3 73055512 73055581 -154468997 - Tigger2 DNA MER2_type -2649 69 1 * 531 227 36 0 chr3 73055644 73055754 -154468824 + L2 LINE L2 3200 3313 0 341 344 33 33 chr3 73055757 73056001 -154468577 - L2 LINE L2 -649 2665 2422 1058 235 142 13 chr3 73056034 73056629 -154467949 + LTR50 LTR ERVL 42 795 0 513 319 19 38 chr3 73056653 73056919 -154467659 - L2 LINE L2 -907 2407 2147 634 315 43 8 chr3 73057312 73057547 -154467031 + MIR SINE MIR 14 256 -6 225 0 0 0 chr3 73057623 73057648 -154466930 + (T)n Simple_repeat Simple_repeat 1 25 0 23 33 0 0 chr3 73057987 73058017 -154466561 + AT_rich Low_complexity Low_complexity 1 30 0 2068 146 7 0 chr3 73058123 73058424 -154466154 - AluSx SINE Alu -5 307 5 229 146 21 0 chr3 73058529 73058577 -154466001 - MLT1J2 LTR MaLR -34 416 368 239 234 99 27 chr3 73058690 73058801 -154465777 - MLT1J2 LTR MaLR -232 218 100 359 188 10 31 chr3 73059191 73059287 -154465291 + LTR67 LTR ERVL 458 551 -6 285 305 14 85 chr3 73059439 73059580 -154464998 + L2 LINE L2 3141 3271 -1 261 371 79 0 chr3 73059598 73059687 -154464891 - L2 LINE L2 -75 3197 3102 1984 138 3 19 chr3 73059723 73060042 -154464536 + MER1B DNA MER1_type 26 339 0 221 320 40 10 chr3 73060258 73060358 -154464220 - L2 LINE L2 -487 2827 2725 290 367 25 35 chr3 73060501 73060787 -154463791 - HERV16 LTR ERVL -655 5109 4827 341 314 42 0 chr3 73060964 73061082 -154463496 - HERV16 LTR ERVL -4873 123 1 397 281 16 0 chr3 73061097 73061225 -154463353 - LTR16A LTR ERVL -15 435 306 5532 131 21 42 chr3 73061227 73062628 -154461950 + L1MA4A LINE L1 4955 6303 0 883 311 12 16 chr3 73062651 73062973 -154461605 - LTR16A LTR ERVL -105 345 25 638 256 54 98 chr3 73063080 73063580 -154460998 - MLT1J LTR MaLR -33 478 1 302 304 176 7 chr3 73063596 73063744 -154460834 - L2 LINE L2 -521 2793 2621 225 0 0 0 chr3 73064544 73064569 -154460009 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 352 337 107 12 chr3 73064712 73064881 -154459697 + MIR SINE MIR 48 232 -30 486 92 40 0 chr3 73065406 73065482 -154459096 + MADE1 DNA Mariner 1 79 -1 248 167 0 0 chr3 73065580 73065622 -154458956 + MER113 DNA MER1_type? 454 495 -26 738 287 49 4 chr3 73066222 73066466 -154458112 + MIR SINE MIR 8 262 0 3333 87 49 4 chr3 73066600 73067094 -154457484 + L1PB2 LINE L1 5633 6148 -3 2185 116 0 10 chr3 73067805 73068116 -154456462 - AluSx SINE Alu -4 308 1 273 289 99 0 chr3 73068240 73068361 -154456217 + MIR3 SINE MIR 42 174 -34 318 331 69 29 chr3 73068694 73068869 -154455709 + MER5A DNA MER1_type 8 189 0 210 398 41 0 chr3 73068972 73069070 -154455508 + L2 LINE L2 2737 2838 -476 2311 99 54 25 chr3 73069638 73069992 -154454586 - THE1B LTR MaLR 0 364 1 799 229 38 68 chr3 73070495 73070835 -154453743 - L1MD2 LINE L1 -3 6356 6027 337 331 51 11 chr3 73071059 73071234 -154453344 - MER5A DNA MER1_type 0 189 8 4034 246 27 18 chr3 73071342 73072689 -154451889 - L1M4 LINE L1 -860 5286 3928 3066 185 37 11 chr3 73072802 73073499 -154451079 - L1MDb LINE L1 -5026 1383 669 1472 279 23 5 chr3 73073477 73073907 -154450671 - L1MDb LINE L1 -5963 446 9 * 990 289 47 34 chr3 73076548 73076935 -154447643 + MLT1L LTR MaLR 3 394 -221 491 254 15 0 chr3 73076976 73077106 -154447472 + MLT1L LTR MaLR 476 607 -8 449 355 133 46 chr3 73077428 73078130 -154446448 + L1MEd LINE L1 134 896 -5223 342 322 41 34 chr3 73078152 73078548 -154446030 + L1MEd LINE L1 896 1193 -4834 399 263 119 0 chr3 73078643 73078761 -154445817 - MIR SINE MIR 0 262 131 212 0 36 0 chr3 73079131 73079159 -154445419 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 501 290 61 28 chr3 73079225 73079679 -154444899 - LTR33A LTR ERVL -18 505 9 279 0 0 0 chr3 73080941 73080972 -154443606 + (GA)n Simple_repeat Simple_repeat 1 31 0 * 492 18 0 0 chr3 73080971 73081028 -154443550 + (TG)n Simple_repeat Simple_repeat 1 57 0 1011 252 170 29 chr3 73081635 73081976 -154442602 - L2 LINE L2 -3 3310 2922 229 327 13 50 chr3 73082112 73082202 -154442376 + MIR SINE MIR 110 193 -69 763 132 23 0 chr3 73082202 73082331 -154442247 + L1PA10 LINE L1 6021 6152 -16 229 327 13 50 chr3 73082331 73082399 -154442179 + MIR SINE MIR 193 262 0 354 283 53 9 chr3 73083461 73083574 -154441004 + MIR SINE MIR 57 174 -88 21 57 0 0 chr3 73084324 73084359 -154440219 + AT_rich Low_complexity Low_complexity 1 35 0 548 283 72 20 chr3 73084442 73084693 -154439885 + L1MC4a LINE L1 5381 5644 -2164 1363 123 9 0 chr3 73084747 73084959 -154439619 + L1PB1 LINE L1 5930 6143 -8 1471 175 43 7 chr3 73085279 73085582 -154438996 + L1MA5 LINE L1 5984 6297 -3 226 0 29 29 chr3 73085587 73085622 -154438956 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 317 286 130 36 chr3 73085674 73085866 -154438712 - MIR SINE MIR 0 262 53 458 266 147 0 chr3 73085908 73086051 -154438527 - MIR SINE MIR -89 173 10 285 265 20 10 chr3 73086474 73086572 -154438006 + L1MC4a LINE L1 5784 5882 -1926 255 276 16 8 chr3 73087296 73087419 -154437159 + L1MC4a LINE L1 5788 5911 -1897 697 264 114 42 chr3 73087980 73088019 -154436559 - MARNA DNA Mariner -57 529 494 2122 133 7 0 chr3 73088019 73088321 -154436257 + AluSx SINE Alu 1 304 -8 697 264 114 42 chr3 73088321 73088754 -154435824 - MARNA DNA Mariner -92 494 23 6633 28 0 1 chr3 73088809 73089590 -154434988 + L1PA4 LINE L1 5374 6153 -2 363 203 170 20 chr3 73089613 73089766 -154434812 - MER112 DNA MER1_type -1 259 84 289 133 0 0 chr3 73089909 73089954 -154434624 - MER20 DNA MER1_type -56 163 119 1745 128 55 83 chr3 73089957 73090341 -154434237 + MLT1B LTR MaLR 4 376 -14 449 205 16 49 chr3 73090344 73090466 -154434112 - MER20 DNA MER1_type -98 121 4 40884 47 8 1 chr3 73090873 73097003 -154427575 + L1PA3 LINE L1 2 6168 0 2383 44 0 0 chr3 73097006 73097299 -154427279 + L1PA4 LINE L1 5861 6153 -2 230 253 22 121 chr3 73098171 73098222 -154426356 + MIR3 SINE MIR 111 151 -57 585 250 82 82 chr3 73098222 73098550 -154426028 - MER102a DNA MER1_type -1 329 2 230 253 22 121 chr3 73098550 73098589 -154425989 + MIR3 SINE MIR 151 192 -16 271 267 27 0 chr3 73098635 73098710 -154425868 - MIR SINE MIR -14 248 172 808 280 122 24 chr3 73098715 73099206 -154425372 - MLT1G1 LTR MaLR -14 581 1 365 307 15 36 chr3 73099229 73099366 -154425212 - MIR SINE MIR -107 155 22 1727 124 49 78 chr3 73099905 73100291 -154424287 - THE1C LTR MaLR 0 375 1 2316 123 0 0 chr3 73100503 73100812 -154423766 - AluSx SINE Alu -3 309 1 262 328 129 26 chr3 73100999 73101115 -154423463 + L2 LINE L2 3143 3270 -2 200 217 0 22 chr3 73101624 73101670 -154422908 + L2 LINE L2 3264 3308 -5 2364 85 0 13 chr3 73101681 73101988 -154422590 + AluSq SINE Alu 1 303 -10 315 172 280 11 chr3 73102197 73102290 -154422288 - ORSL DNA AcHobo -157 118 1 2246 139 39 35 chr3 73103611 73104043 -154420535 - Tigger2a DNA MER2_type 0 434 1 2086 133 36 0 chr3 73104468 73104769 -154419809 + AluSx SINE Alu 1 312 0 239 323 42 31 chr3 73105031 73105127 -154419451 - L2 LINE L2 -17 3255 3159 299 257 14 0 chr3 73105127 73105197 -154419381 - L2 LINE L2 0 3272 3202 509 235 208 0 chr3 73105913 73106062 -154418516 + MIR SINE MIR 78 257 -5 1294 50 11 11 chr3 73106122 73106301 -154418277 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 746 285 18 18 chr3 73107435 73107663 -154416915 - MIR SINE MIR -34 228 1 2212 172 64 5 chr3 73107744 73108179 -154416399 + LOR1b LTR ERV1 1 461 0 180 359 43 53 chr3 73108217 73108426 -154416152 + L3b LINE CR1 1109 1315 -268 485 327 30 20 chr3 73108542 73108744 -154415834 + MIR SINE MIR 57 260 -2 252 360 126 0 chr3 73109850 73109961 -154414617 + L2 LINE L2 3180 3304 -9 947 157 17 96 chr3 73109961 73110191 -154414387 - MER20 DNA MER1_type -4 215 4 298 303 207 0 chr3 73110920 73111065 -154413513 + MIR SINE MIR 86 260 -2 207 338 0 25 chr3 73111132 73111212 -154413366 + MIR SINE MIR 9 86 -176 1075 243 33 33 chr3 73111212 73111546 -154413032 - MLT1I LTR MaLR -2 407 74 398 273 38 77 chr3 73111656 73111839 -154412739 - MIR SINE MIR -5 257 82 251 157 20 0 chr3 73112339 73112390 -154412188 + CT-rich Low_complexity Low_complexity 2 53 0 766 253 30 10 chr3 73112415 73112617 -154411961 + MIR SINE MIR 57 262 0 276 271 89 76 chr3 73112963 73113188 -154411390 + L2 LINE L2 3044 3271 -1 27 49 0 0 chr3 73113203 73113244 -154411334 + AT_rich Low_complexity Low_complexity 1 41 0 339 274 111 44 chr3 73115536 73115671 -154408907 + MER5A DNA MER1_type 44 187 -2 183 349 59 40 chr3 73115690 73115842 -154408736 + L2 LINE L2 2897 3051 -221 212 119 0 24 chr3 73115987 73116029 -154408549 + (TG)n Simple_repeat Simple_repeat 1 41 0 277 258 57 50 chr3 73116637 73116659 -154407919 + L1MC/D LINE L1 5664 5684 -2124 1995 168 22 19 chr3 73116659 73117023 -154407555 - MLT1A1 LTR MaLR 0 365 1 277 258 57 50 chr3 73117023 73117159 -154407419 + L1MC/D LINE L1 5684 5823 -1985 721 143 0 0 chr3 73117162 73117267 -154407311 + FLAM_C SINE Alu 1 105 -38 1050 179 23 0 chr3 73117794 73117967 -154406611 + AluJb SINE Alu 129 305 -7 418 83 0 0 chr3 73118886 73118946 -154405632 - Alu SINE Alu -11 301 242 2371 67 30 0 chr3 73119073 73119370 -154405208 - AluY SINE Alu -5 306 1 266 280 131 19 chr3 73120188 73120295 -154404283 - MIR SINE MIR -141 121 3 699 272 31 5 chr3 73120985 73121180 -154403398 + MIR SINE MIR 49 248 -14 242 253 77 11 chr3 73122023 73122114 -154402464 + MIR SINE MIR 118 214 -48 351 374 108 47 chr3 73122431 73122837 -154401741 + L2 LINE L2 2811 3241 -31 274 321 54 0 chr3 73124259 73124371 -154400207 + MIR SINE MIR 120 237 -25 2754 148 5 7 chr3 73124546 73124979 -154399599 - MSTB1 LTR MaLR 0 432 1 2430 68 0 0 chr3 73125111 73125406 -154399172 + AluY SINE Alu 1 295 -16 557 250 7 53 chr3 73125406 73125558 -154399020 - MIR SINE MIR -117 145 1 344 282 81 8 chr3 73126508 73126632 -154397946 + MIR SINE MIR 74 206 -56 228 67 0 0 chr3 73127082 73127112 -154397466 + (TC)n Simple_repeat Simple_repeat 1 30 0 1851 154 46 6 chr3 73127132 73127457 -154397121 - MER7A DNA MER2_type -9 337 2 1292 134 14 0 chr3 73127481 73127697 -154396881 - L1MA5 LINE L1 -4 6296 6078 461 271 144 17 chr3 73127748 73127929 -154396649 + MIR SINE MIR 41 244 -18 246 341 0 13 chr3 73128446 73128547 -154396031 - MIR SINE MIR -100 108 9 2047 170 124 7 chr3 73128800 73129045 -154395533 - MLT1C LTR MaLR 0 467 252 180 0 0 0 chr3 73129045 73129065 -154395513 + (TG)n Simple_repeat Simple_repeat 1 20 0 2047 170 124 7 chr3 73129065 73129237 -154395341 - MLT1C LTR MaLR -215 252 1 293 282 106 36 chr3 73129257 73129587 -154394991 - L1ME4a LINE L1 -220 5901 5549 21 0 0 0 chr3 73130029 73130050 -154394528 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 73130300 73130321 -154394257 + AT_rich Low_complexity Low_complexity 1 21 0 506 341 37 18 chr3 73130485 73130702 -154393876 - MIR SINE MIR -10 252 32 262 262 48 29 chr3 73131409 73131512 -154393066 - Charlie8 DNA MER1_type -2185 232 128 22 35 0 0 chr3 73132045 73132074 -154392504 + AT_rich Low_complexity Low_complexity 1 29 0 633 172 60 112 chr3 73132111 73132326 -154392252 + MER3 DNA MER1_type 2 205 -4 1582 161 107 125 chr3 73132949 73133558 -154391020 - LTR8A LTR ERV1 -129 598 1 894 188 89 0 chr3 73133923 73134125 -154390453 - LTR16C LTR ERVL 0 491 272 226 267 13 27 chr3 73134120 73134195 -154390383 - MLT1J1 LTR MaLR -315 131 58 * 261 70 53 18 chr3 73134643 73134700 -154389878 + T-rich Low_complexity Low_complexity 2 60 0 216 0 0 0 chr3 73135593 73135617 -154388961 + (TCTA)n Simple_repeat Simple_repeat 1 24 0 1437 232 60 37 chr3 73135744 73136179 -154388399 + LTR16A1 LTR ERVL 13 457 0 213 220 0 85 chr3 73136349 73136408 -154388170 + MIR SINE MIR 92 145 -63 195 326 0 0 chr3 73136535 73136581 -154387997 + L2 LINE L2 3211 3256 -16 338 330 29 0 chr3 73137191 73137294 -154387284 + L2 LINE L2 3207 3312 -1 251 279 163 39 chr3 73137650 73137779 -154386799 - MIR SINE MIR -90 172 28 23 33 0 0 chr3 73137865 73137895 -154386683 + AT_rich Low_complexity Low_complexity 1 30 0 1039 209 4 0 chr3 73138037 73138286 -154386292 + L1MA4 LINE L1 6016 6265 -35 379 268 28 35 chr3 73138544 73138686 -154385892 + MIR3 SINE MIR 4 144 -64 21 0 0 0 chr3 73139015 73139036 -154385542 + AT_rich Low_complexity Low_complexity 1 21 0 345 24 0 0 chr3 73139603 73139645 -154384933 + (TG)n Simple_repeat Simple_repeat 2 43 0 28 29 0 0 chr3 73140033 73140068 -154384510 + AT_rich Low_complexity Low_complexity 1 35 0 251 345 44 18 chr3 73140149 73140262 -154384316 + MIR SINE MIR 28 143 -65 372 173 93 0 chr3 73140282 73140357 -154384221 + MLT1F1 LTR MaLR 1 82 -460 1158 258 29 3 chr3 73140374 73140680 -154383898 + MLT1F1 LTR MaLR 252 565 -2 489 266 27 30 chr3 73140813 73140967 -154383611 - MER5A DNA MER1_type -5 184 20 337 294 11 0 chr3 73141063 73141155 -154383423 - MER81 DNA DNA 0 114 22 198 330 71 92 chr3 73141199 73141481 -154383097 + L2 LINE L2 2941 3216 -56 228 291 0 0 chr3 73142235 73142290 -154382288 - MIR SINE MIR 0 262 208 597 270 35 11 chr3 73142388 73142562 -154382016 - MIR SINE MIR -75 187 10 3455 268 34 32 chr3 73143653 73145114 -154379464 - L1MEc LINE L1 -4595 1801 338 246 218 0 36 chr3 73145579 73145634 -154378944 - MLT1K LTR MaLR -66 522 470 405 327 65 21 chr3 73145750 73146086 -154378492 - MLT1K LTR MaLR -162 426 76 1326 123 81 30 chr3 73146687 73146922 -154377656 + MER1B DNA MER1_type 133 339 0 379 361 28 0 chr3 73147139 73147283 -154377295 + MIR3 SINE MIR 20 167 -41 289 263 76 118 chr3 73147601 73147982 -154376596 + L2 LINE L2 1214 1578 -1736 341 335 187 18 chr3 73148019 73148350 -154376228 + L2 LINE L2 2853 3239 -74 2182 124 17 8 chr3 73148481 73148836 -154375742 - L1PB1 LINE L1 0 6867 6510 13851 190 17 8 chr3 73148975 73153988 -154370590 - L1PB1 LINE L1 -424 6443 1372 1382 139 8 0 chr3 73153985 73154236 -154370342 - L1 LINE L1 -1229 4917 4665 * 1866 145 8 21 chr3 73154234 73154607 -154369971 + L1 LINE L1 4282 4649 -1497 462 355 18 14 chr3 73154620 73154774 -154369804 - L1ME4a LINE L1 -290 5831 5674 1763 196 0 3 chr3 73154774 73155075 -154369503 - AluJo SINE Alu -12 300 1 462 355 18 14 chr3 73155075 73155137 -154369441 - L1ME4a LINE L1 -447 5674 5614 258 287 33 49 chr3 73155353 73155475 -154369103 + L2 LINE L2 3150 3269 -3 204 368 51 43 chr3 73156363 73156480 -154368098 + L2 LINE L2 3133 3250 -22 544 297 68 31 chr3 73157132 73157354 -154367224 - MIR SINE MIR -31 231 2 314 313 40 0 chr3 73157424 73157523 -154367055 - MIR SINE MIR -74 188 86 205 195 0 0 chr3 73158524 73158565 -154366013 + A-rich Low_complexity Low_complexity 3 43 0 729 265 91 4 chr3 73158622 73158852 -154365726 - MIR SINE MIR -11 251 2 253 272 183 39 chr3 73158965 73159145 -154365433 - MIR SINE MIR -45 217 12 506 356 28 5 chr3 73159167 73159383 -154365195 - L2 LINE L2 -493 2821 2601 371 360 62 0 chr3 73160952 73161130 -154363448 - MIR SINE MIR -59 203 15 494 262 67 0 chr3 73162024 73162173 -154362405 + L1ME3A LINE L1 5455 5613 -557 229 224 61 20 chr3 73162185 73162283 -154362295 + (TATATG)n Simple_repeat Simple_repeat 4 105 0 1044 232 198 26 chr3 73162283 73162746 -154361832 + L1ME3A LINE L1 5614 6160 -10 180 244 74 104 chr3 73163650 73163785 -154360793 + L2 LINE L2 3175 3305 -8 26 30 0 0 chr3 73163995 73164028 -154360550 + AT_rich Low_complexity Low_complexity 1 33 0 791 268 69 9 chr3 73164034 73164265 -154360313 - MIR SINE MIR -14 248 4 458 289 58 15 chr3 73165439 73165538 -154359040 - MIR SINE MIR -4 258 165 201 74 0 0 chr3 73165538 73165565 -154359013 + (TTA)n Simple_repeat Simple_repeat 2 28 0 458 289 58 15 chr3 73165565 73165663 -154358915 - MIR SINE MIR -97 165 48 506 271 15 45 chr3 73165889 73166088 -154358490 - MER117 DNA MER1_type -1 196 4 296 256 2 0 chr3 73166544 73166619 -154357959 - MIR SINE MIR -51 157 81 257 204 56 0 chr3 73166654 73166708 -154357870 - L2 LINE L2 -10 3262 3206 244 376 81 34 chr3 73166983 73167366 -154357212 + L2 LINE L2 2912 3312 -1 579 298 132 4 chr3 73167420 73167648 -154356930 - MIR SINE MIR 0 262 6 724 194 54 68 chr3 73167655 73167877 -154356701 - MER20 DNA MER1_type 0 219 1 1700 192 3 7 chr3 73168244 73168541 -154356037 - AluJo SINE Alu -16 296 1 387 0 0 0 chr3 73169339 73169382 -154355196 + (TG)n Simple_repeat Simple_repeat 1 43 0 549 113 0 0 chr3 73169613 73169693 -154354885 + MADE1 DNA Mariner 1 80 0 455 75 0 75 chr3 73169847 73169896 -154354682 - MADE1 DNA Mariner -1 79 37 2560 43 3 0 chr3 73169896 73170198 -154354380 + AluY SINE Alu 1 303 -8 455 75 0 75 chr3 73170198 73170228 -154354350 - MADE1 DNA Mariner -43 37 6 2060 89 4 11 chr3 73170590 73170860 -154353718 - AluSp SINE Alu -6 307 40 4916 171 48 31 chr3 73171273 73171772 -154352806 + L1MC2 LINE L1 4872 5361 -983 2248 134 0 0 chr3 73171772 73172079 -154352499 + AluSx SINE Alu 1 307 -5 4916 171 48 31 chr3 73172079 73173028 -154351550 + L1MC2 LINE L1 5361 6342 -2 276 299 76 51 chr3 73173453 73173610 -154350968 - MIR SINE MIR -101 161 1 447 255 138 14 chr3 73174020 73174165 -154350413 - L2 LINE L2 -5 3308 3146 2623 212 60 10 chr3 73174170 73174482 -154350096 - L1MD2 LINE L1 -3 6356 6061 2131 121 3 0 chr3 73174482 73174779 -154349799 - AluSx SINE Alu -14 298 1 2623 212 60 10 chr3 73174779 73175136 -154349442 - L1MD2 LINE L1 -298 6061 5654 2759 10 0 0 chr3 73175242 73175541 -154349037 - AluYa5 SINE Alu -12 299 1 5117 180 50 17 chr3 73175541 73177085 -154347493 - L1MC2 LINE L1 -13 6331 4751 2258 242 15 3 chr3 73177076 73177754 -154346824 - L1MC2 LINE L1 -2130 4016 3331 * 678 287 78 50 chr3 73177801 73178321 -154346257 - L2 LINE L2 -213 3059 2524 189 0 0 0 chr3 73179375 73179396 -154345182 + (T)n Simple_repeat Simple_repeat 1 21 0 1382 209 42 136 chr3 73179463 73180229 -154344349 - LTR8A LTR ERV1 0 727 34 2180 136 0 0 chr3 73180645 73180939 -154343639 - AluSx SINE Alu -18 294 1 22 35 0 0 chr3 73181197 73181226 -154343352 + AT_rich Low_complexity Low_complexity 1 29 0 2234 125 0 0 chr3 73181290 73181595 -154342983 - AluY SINE Alu -6 305 1 406 300 85 0 chr3 73181823 73181953 -154342625 + MIR SINE MIR 101 241 -21 4699 150 47 38 chr3 73182314 73182700 -154341878 - L1PB4 LINE L1 -7 6149 5768 402 21 0 0 chr3 73182700 73182747 -154341831 + (TG)n Simple_repeat Simple_repeat 2 48 0 4699 150 47 38 chr3 73182747 73183933 -154340645 - L1PB4 LINE L1 -388 5768 4549 2354 79 3 0 chr3 73183933 73184224 -154340354 - AluSg SINE Alu -18 292 1 4699 150 47 38 chr3 73184224 73184545 -154340033 - L1PB4 LINE L1 -1607 4549 4233 297 51 0 0 chr3 73185038 73185077 -154339501 + (CA)n Simple_repeat Simple_repeat 2 40 0 239 111 0 22 chr3 73185318 73185363 -154339215 + (TG)n Simple_repeat Simple_repeat 1 44 0 632 260 110 82 chr3 73186532 73187049 -154337529 - L2 LINE L2 -1 3312 2782 261 297 145 22 chr3 73187139 73187277 -154337301 - MER5A DNA MER1_type -28 161 7 236 303 0 20 chr3 73187287 73187386 -154337192 - LTR67 LTR ERVL -2 555 459 2596 116 3 0 chr3 73187462 73187825 -154336753 - THE1B LTR MaLR 0 364 1 383 224 12 0 chr3 73187966 73188051 -154336527 - L2 LINE L2 -2 3270 3185 633 242 0 45 chr3 73188794 73188951 -154335627 + MIR SINE MIR 23 172 -90 255 293 27 0 chr3 73189459 73189534 -154335044 + MIR SINE MIR 165 241 -21 369 285 70 48 chr3 73189688 73189819 -154334759 - MIR SINE MIR -49 213 75 2125 132 7 0 chr3 73189819 73190115 -154334463 + AluSx SINE Alu 1 298 -14 369 285 70 48 chr3 73190115 73190169 -154334409 - MIR SINE MIR -187 75 24 226 344 70 27 chr3 73190267 73190598 -154333980 + L2 LINE L2 2617 2961 -353 224 185 44 148 chr3 73190760 73190895 -154333683 + L2 LINE L2 2922 3042 -230 644 265 24 18 chr3 73191204 73191374 -154333204 - MIR SINE MIR -12 250 80 280 304 159 20 chr3 73191380 73191581 -154332997 + L2 LINE L2 3043 3271 -1 357 333 21 21 chr3 73191702 73191843 -154332735 + MIR SINE MIR 2 142 -120 410 277 40 0 chr3 73192501 73192631 -154331947 - MER5A DNA MER1_type -15 174 31 2287 154 102 2 chr3 73192978 73193427 -154331151 - MLT1D LTR MaLR 0 505 12 741 281 45 0 chr3 73193506 73193727 -154330851 - MIR SINE MIR 0 262 32 300 337 0 10 chr3 73193901 73193999 -154330579 - L2 LINE L2 0 3272 3176 452 280 0 0 chr3 73194538 73194645 -154329933 + MIR SINE MIR 48 154 -108 1546 324 71 20 chr3 73194824 73195860 -154328718 + L2 LINE L2 2228 3313 0 243 246 0 15 chr3 73196059 73196124 -154328454 - MLT1K LTR MaLR -492 96 33 2292 80 0 35 chr3 73196128 73196439 -154328139 + AluY SINE Alu 1 300 -11 195 224 17 69 chr3 73196480 73196538 -154328040 + MIR SINE MIR 152 206 -56 192 158 0 0 chr3 73196612 73196650 -154327928 + (TA)n Simple_repeat Simple_repeat 2 39 0 607 258 73 35 chr3 73196828 73197115 -154327463 + MLT1I LTR MaLR 81 378 -31 213 39 0 0 chr3 73197122 73197148 -154327430 + (TTTTTG)n Simple_repeat Simple_repeat 3 28 0 344 302 112 43 chr3 73197328 73197586 -154326992 - L2 LINE L2 -30 3283 3008 484 286 52 7 chr3 73198351 73198505 -154326073 + MIR SINE MIR 32 192 -70 213 273 91 0 chr3 73198541 73198607 -154325971 - L2 LINE L2 -2 3311 3240 253 310 252 47 chr3 73199123 73199504 -154325074 + L3 LINE CR1 184 642 -935 191 380 26 0 chr3 73199540 73199653 -154324925 - MER5A DNA MER1_type -1 188 73 386 358 28 31 chr3 73199675 73199996 -154324582 + L3 LINE CR1 674 993 -584 315 224 239 18 chr3 73201545 73201704 -154322874 - MIR SINE MIR -12 250 55 198 219 49 0 chr3 73201719 73201760 -154322818 + L2 LINE L2 3261 3303 -10 1459 195 14 21 chr3 73202165 73202484 -154322094 - AluJb SINE Alu 0 317 1 257 336 54 23 chr3 73202499 73202643 -154321935 - MIR SINE MIR -63 145 30 229 289 48 108 chr3 73202652 73202984 -154321594 - L2 LINE L2 -530 2784 2473 254 389 19 9 chr3 73202992 73203100 -154321478 + L2 LINE L2 3150 3258 -14 1676 204 45 16 chr3 73203803 73204180 -154320398 + MLT1B LTR MaLR 1 388 -2 6481 261 24 26 chr3 73205759 73208945 -154315633 + L1PA12 LINE L1 8 3466 -4118 1296 143 4 4 chr3 73208942 73209172 -154315406 - L1P LINE L1 -2071 4075 3846 * 1718 114 12 0 chr3 73209175 73209429 -154315149 + L1PA15 LINE L1 5906 6162 -3 1259 79 0 0 chr3 73209630 73209808 -154314770 - L1P LINE L1 -1214 4932 4755 6029 49 4 0 chr3 73209808 73210562 -154314016 + L1PA6 LINE L1 5398 6159 0 1196 316 42 112 chr3 73210567 73211775 -154312803 + L2 LINE L2 2180 3289 -24 259 193 18 0 chr3 73213021 73213078 -154311500 - MER113 DNA MER1_type? -72 449 392 1051 233 23 7 chr3 73213179 73213479 -154311099 - L1M4 LINE L1 -1194 5346 5042 1339 246 41 69 chr3 73213588 73214513 -154310065 - L1MDa LINE L1 -2977 3563 2665 7469 39 0 0 chr3 73214513 73215434 -154309144 - L1PA5 LINE L1 -2 6152 5232 7670 30 0 0 chr3 73215434 73216384 -154308194 + L1P LINE L1 3698 4647 -1499 2025 174 67 46 chr3 73216384 73216968 -154307610 - L1MDa LINE L1 -3862 2678 2086 2617 210 57 37 chr3 73216970 73217623 -154306955 - L1MDa LINE L1 -5844 696 31 343 259 61 57 chr3 73217656 73217868 -154306710 - L1MC5 LINE L1 -481 7480 7268 962 163 7 7 chr3 73218259 73218412 -154306166 + AluSq SINE Alu 1 153 -160 426 163 0 0 chr3 73218412 73218492 -154306086 + AluS SINE Alu 223 302 -7 562 124 8 70 chr3 73218639 73218768 -154305810 + L1MA9 LINE L1 6079 6199 -113 245 284 198 0 chr3 73219052 73219133 -154305445 + L2 LINE L2 3201 3297 -16 562 282 35 25 chr3 73219509 73219711 -154304867 - MIR SINE MIR -5 257 54 272 192 26 0 chr3 73219888 73219966 -154304612 + MER113 DNA MER1_type? 11 90 -431 758 239 55 5 chr3 73220118 73220319 -154304259 + MER113 DNA MER1_type? 311 521 0 202 196 22 22 chr3 73221004 73221050 -154303528 - MIR SINE MIR -107 155 110 258 32 0 0 chr3 73221428 73221459 -154303119 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 1014 292 16 42 chr3 73222686 73223117 -154301461 - LTR16A LTR ERVL -5 445 26 2226 100 13 26 chr3 73223204 73223381 -154301197 - AluSg SINE Alu -4 306 133 351 0 0 0 chr3 73223381 73223420 -154301158 + (TG)n Simple_repeat Simple_repeat 2 40 0 2226 100 13 26 chr3 73223420 73223552 -154301026 - AluSg SINE Alu -177 133 1 318 190 51 0 chr3 73223965 73224044 -154300534 + L1PA8 LINE L1 6087 6169 -3 625 267 92 55 chr3 73224199 73224547 -154300031 - MLT1K LTR MaLR -197 391 31 266 309 160 11 chr3 73224580 73224755 -154299823 + MIR SINE MIR 47 247 -15 262 217 87 0 chr3 73225769 73225838 -154298740 + L2 LINE L2 3232 3306 -7 447 298 68 19 chr3 73226472 73226633 -154297945 - MIR SINE MIR -87 175 7 275 353 17 17 chr3 73226631 73226747 -154297831 - MIR SINE MIR -114 148 33 * 203 256 0 105 chr3 73227329 73227415 -154297163 + MIR SINE MIR 162 238 -24 21 0 0 0 chr3 73227582 73227603 -154296975 + AT_rich Low_complexity Low_complexity 1 21 0 287 343 10 20 chr3 73227965 73228166 -154296412 - L1ME LINE L1 -352 5810 5612 289 105 0 35 chr3 73228246 73228303 -154296275 + (TTCC)n Simple_repeat Simple_repeat 2 56 0 1612 164 6 42 chr3 73228303 73228615 -154295963 - AluJo SINE Alu 0 312 12 258 341 73 32 chr3 73228835 73228958 -154295620 + L2 LINE L2 3133 3260 -12 370 330 0 17 chr3 73228968 73229083 -154295495 + MIR SINE MIR 26 138 -124 655 249 6 45 chr3 73230252 73230429 -154294149 - MIR SINE MIR -14 248 79 308 263 53 11 chr3 73230748 73230843 -154293735 + MIR SINE MIR 162 260 -2 2591 50 0 0 chr3 73231638 73231941 -154292637 + AluY SINE Alu 1 303 -8 412 316 30 38 chr3 73232477 73232610 -154291968 + MIR SINE MIR 20 151 -111 447 294 74 70 chr3 73233118 73233254 -154291324 + L3 LINE CR1 968 1102 -475 1576 134 58 31 chr3 73233254 73233546 -154291032 + AluY SINE Alu 1 300 -11 447 294 74 70 chr3 73233546 73233708 -154290870 + L3 LINE CR1 1102 1267 -310 248 270 35 26 chr3 73233723 73233838 -154290740 - LTR67 LTR ERVL -10 547 432 346 139 5 16 chr3 73234043 73234117 -154290461 - MLT1A1 LTR MaLR 0 365 300 1119 154 171 12 chr3 73234244 73234490 -154290088 - MLT1A1 LTR MaLR -80 285 1 396 291 87 87 chr3 73234560 73234917 -154289661 + MLT1H LTR MaLR 50 406 -143 2244 216 50 16 chr3 73235026 73235571 -154289007 - MLT1F1 LTR MaLR -4 563 1 315 289 45 58 chr3 73236533 73236689 -154287889 - MER117 DNA MER1_type -43 154 1 750 139 51 121 chr3 73236970 73237185 -154287393 - MER20 DNA MER1_type -19 200 1 234 193 88 0 chr3 73237493 73237550 -154287028 + L2 LINE L2 2912 2973 -341 * 279 219 164 0 chr3 73237546 73237619 -154286959 + L2 LINE L2 3229 3313 0 22 0 0 0 chr3 73238174 73238196 -154286382 + AT_rich Low_complexity Low_complexity 1 22 0 369 198 0 0 chr3 73238198 73238279 -154286299 + (CA)n Simple_repeat Simple_repeat 2 82 0 490 293 17 50 chr3 73238306 73238487 -154286091 - MIR SINE MIR -73 189 15 182 297 76 35 chr3 73238503 73238648 -154285930 - L2 LINE L2 -313 2959 2809 23 33 0 0 chr3 73239471 73239501 -154285077 + AT_rich Low_complexity Low_complexity 1 30 0 251 209 0 0 chr3 73239795 73239838 -154284740 - L2 LINE L2 -2 3311 3269 461 358 70 19 chr3 73240203 73240577 -154284001 - L2 LINE L2 -353 2961 2569 705 260 74 30 chr3 73240705 73240936 -154283642 - MIR SINE MIR -3 259 19 216 278 113 40 chr3 73241208 73241359 -154283219 - MIR SINE MIR -41 221 60 249 283 142 9 chr3 73242035 73242141 -154282437 + L2 LINE L2 3152 3271 -1 259 348 279 0 chr3 73242186 73242390 -154282188 + MIR SINE MIR 2 262 0 3166 165 0 18 chr3 73242904 73242943 -154281635 - MLT2B3 LTR ERVL 0 554 516 1214 71 4 4 chr3 73242943 73243192 -154281386 + (GAAA)n Simple_repeat Simple_repeat 1 249 0 3166 165 0 18 chr3 73243192 73243699 -154280879 - MLT2B3 LTR ERVL -38 516 8 468 216 69 9 chr3 73244449 73244565 -154280013 - MIR SINE MIR -37 225 103 966 279 117 3 chr3 73244569 73244927 -154279651 + MLT1I LTR MaLR 9 407 -2 254 235 148 25 chr3 73244959 73245040 -154279538 - L2 LINE L2 0 3272 3182 191 400 0 42 chr3 73245059 73245154 -154279424 - MIR SINE MIR -159 103 13 734 314 57 33 chr3 73245412 73245922 -154278656 + LTR67 LTR ERVL 36 557 0 933 326 78 44 chr3 73246143 73247134 -154277444 - L2 LINE L2 -3 3269 2242 354 306 84 53 chr3 73247423 73247707 -154276871 - L2 LINE L2 -339 2975 2683 243 61 0 0 chr3 73248788 73248801 -154275777 + (TA)n Simple_repeat Simple_repeat 1 46 0 243 61 0 0 chr3 73248801 73248834 -154275744 + (TA)n Simple_repeat Simple_repeat 1 33 0 1585 249 17 0 chr3 73249750 73250156 -154274422 - MER63 DNA MER1_type 0 1061 649 915 224 20 0 chr3 73250299 73250500 -154274078 - MER58A DNA MER1_type -15 209 5 21 36 0 0 chr3 73250560 73250588 -154273990 + AT_rich Low_complexity Low_complexity 1 28 0 2045 132 0 10 chr3 73251066 73251369 -154273209 + AluSx SINE Alu 13 312 0 2235 107 58 14 chr3 73251396 73251741 -154272837 - THE1B LTR MaLR 0 364 5 11561 92 10 4 chr3 73251745 73253315 -154271263 - THE1B-int LTR MaLR 0 1580 1 1980 119 79 18 chr3 73253315 73253658 -154270920 - THE1B LTR MaLR 0 364 1 307 335 36 24 chr3 73253998 73254165 -154270413 + MIR3 SINE MIR 30 198 -10 581 255 38 51 chr3 73254264 73254499 -154270079 + Charlie8 DNA MER1_type 1 232 -2185 643 281 103 44 chr3 73254792 73255664 -154268914 + L1MC4a LINE L1 4411 5334 -812 23 0 0 0 chr3 73255674 73255697 -154268881 + AT_rich Low_complexity Low_complexity 1 23 0 1752 170 7 7 chr3 73255697 73255985 -154268593 - AluJb SINE Alu -24 288 1 243 280 11 0 chr3 73255988 73256081 -154268497 + L1MC4a LINE L1 5338 5431 -739 680 220 119 30 chr3 73256082 73256384 -154268194 + L1ME1 LINE L1 5649 5945 -221 2513 199 98 13 chr3 73256384 73256987 -154267591 - MLT1E1 LTR MaLR 0 654 1 680 220 119 30 chr3 73256987 73257023 -154267555 + L1ME1 LINE L1 5945 5976 -190 703 205 13 0 chr3 73257249 73257400 -154267178 + L1MA10 LINE L1 6169 6321 -13 348 268 90 12 chr3 73257583 73257837 -154266741 + L1MC4a LINE L1 5622 5826 -336 3034 145 9 32 chr3 73258104 73258641 -154265937 - LTR45 LTR ERV1 0 525 1 1918 175 60 2 chr3 73258682 73259081 -154265497 + L1MC3 LINE L1 7358 7779 -6 363 322 176 5 chr3 73259147 73259346 -154265232 + MIR SINE MIR 30 262 0 336 268 24 8 chr3 73259877 73260000 -154264578 + L1ME4a LINE L1 5785 5909 -212 829 277 4 38 chr3 73260405 73260583 -154263995 + MIR SINE MIR 29 199 -63 2258 112 0 13 chr3 73260583 73260887 -154263691 - AluSg SINE Alu -10 300 1 829 277 4 38 chr3 73260887 73260946 -154263632 + MIR SINE MIR 199 258 -4 307 343 82 0 chr3 73260940 73261074 -154263504 - MIR SINE MIR -105 157 13 * 29 0 0 0 chr3 73261726 73261755 -154262823 + AT_rich Low_complexity Low_complexity 1 29 0 375 281 19 75 chr3 73262472 73262632 -154261946 + MER5A DNA MER1_type 17 167 -22 205 360 60 20 chr3 73263008 73263108 -154261470 - MIR SINE MIR -110 152 49 1076 263 88 56 chr3 73263307 73263829 -154260749 - MLT1H LTR MaLR -10 539 1 315 0 0 0 chr3 73265168 73265203 -154259375 + (CA)n Simple_repeat Simple_repeat 2 36 0 302 373 135 0 chr3 73265518 73265703 -154258875 + MIR SINE MIR 47 256 -6 256 238 9 105 chr3 73265719 73265824 -154258754 - L2 LINE L2 -229 3043 2949 249 287 92 52 chr3 73266349 73266523 -154258055 - L2 LINE L2 -234 3038 2858 810 249 70 0 chr3 73266855 73267096 -154257482 + LTR16C LTR ERVL 200 457 -34 271 204 0 0 chr3 73267312 73267366 -154257212 + MIR SINE MIR 179 232 -30 357 284 7 61 chr3 73267715 73267863 -154256715 - MER5A DNA MER1_type -36 153 14 229 290 11 5 chr3 73269187 73269272 -154255306 - MIR SINE MIR -63 145 69 519 372 5 0 chr3 73269952 73270159 -154254419 + MIR SINE MIR 7 214 -48 251 209 0 0 chr3 73270836 73270879 -154253699 + L2 LINE L2 3269 3311 -2 23 33 0 0 chr3 73271173 73271203 -154253375 + AT_rich Low_complexity Low_complexity 1 30 0 278 264 0 94 chr3 73272634 73272740 -154251838 + L2 LINE L2 3172 3267 -5 2377 47 10 0 chr3 73272846 73273143 -154251435 - L1PA4 LINE L1 -1 6154 5855 2253 110 10 0 chr3 73273527 73273835 -154250743 - AluSx SINE Alu -1 311 1 361 266 0 8 chr3 73274085 73274209 -154250369 - LTR33 LTR ERVL 0 521 399 337 197 31 24 chr3 73274225 73274352 -154250226 + GA-rich Low_complexity Low_complexity 4 131 0 832 252 90 17 chr3 73274355 73274645 -154249933 - LTR33 LTR ERVL -210 311 1 277 333 86 0 chr3 73274711 73274816 -154249762 - L2 LINE L2 -6 3266 3153 21 36 0 0 chr3 73275004 73275032 -154249546 + AT_rich Low_complexity Low_complexity 1 28 0 278 176 0 0 chr3 73275036 73275087 -154249491 - FLAM_A SINE Alu -16 117 67 244 289 40 26 chr3 73276312 73276388 -154248190 - MIR SINE MIR -63 145 69 400 299 14 12 chr3 73276918 73277057 -154247521 + MIR SINE MIR 23 159 -65 218 280 0 0 chr3 73278079 73278129 -154246449 + (TTCA)n Simple_repeat Simple_repeat 2 51 0 258 343 128 0 chr3 73278136 73278238 -154246340 - L2 LINE L2 -22 3250 3136 388 262 19 19 chr3 73278290 73278397 -154246181 - MIR SINE MIR 0 262 156 582 321 62 17 chr3 73278514 73278754 -154245824 - MIR SINE MIR -11 251 1 620 227 160 0 chr3 73278952 73279102 -154245476 + MER5A DNA MER1_type 10 183 -6 215 234 26 78 chr3 73279310 73279387 -154245191 + MER5A DNA MER1_type 1 73 -116 342 231 56 37 chr3 73279609 73279726 -154244852 + MIR SINE MIR 30 148 -60 354 282 0 0 chr3 73279993 73280071 -154244507 - L2 LINE L2 0 3313 3236 279 0 0 0 chr3 73280702 73280733 -154243845 + (ATGTG)n Simple_repeat Simple_repeat 4 34 0 279 0 0 0 chr3 73281706 73281737 -154242841 + (TG)n Simple_repeat Simple_repeat 1 31 0 2102 131 47 33 chr3 73281839 73282198 -154242380 - THE1B LTR MaLR 0 364 1 253 246 46 31 chr3 73282200 73282265 -154242313 + L2 LINE L2 3246 3311 -2 770 302 87 40 chr3 73282551 73283223 -154241355 - L2 LINE L2 0 3313 2564 268 397 0 7 chr3 73283335 73283486 -154241092 - MIR3 SINE MIR -24 184 35 615 329 53 16 chr3 73283702 73283948 -154240630 + MIR SINE MIR 8 262 0 186 271 0 21 chr3 73284181 73284229 -154240349 - L2 LINE L2 0 3313 3267 325 218 209 0 chr3 73284575 73284694 -154239884 - MIR SINE MIR -65 143 32 207 0 0 0 chr3 73284823 73284846 -154239732 + (TG)n Simple_repeat Simple_repeat 1 23 0 308 181 12 0 chr3 73284853 73284936 -154239642 + GA-rich Low_complexity Low_complexity 1 84 0 188 33 0 33 chr3 73287612 73287642 -154236936 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 32 0 0 0 chr3 73287745 73287777 -154236801 + AT_rich Low_complexity Low_complexity 1 32 0 815 264 53 6 chr3 73288229 73288468 -154236110 - MIR SINE MIR -12 250 2 21 0 0 0 chr3 73288939 73288960 -154235618 + AT_rich Low_complexity Low_complexity 1 21 0 1989 144 0 0 chr3 73290655 73290960 -154233618 - AluSx SINE Alu 0 305 1 494 274 19 0 chr3 73291329 73291435 -154233143 - L2 LINE L2 -5 3267 3160 346 303 57 16 chr3 73291911 73292033 -154232545 - L2 LINE L2 0 3313 3187 971 158 0 46 chr3 73292034 73292230 -154232348 - MER20 DNA MER1_type 0 219 33 340 323 48 32 chr3 73292470 73292659 -154231919 - MIR SINE MIR -65 197 6 376 374 32 16 chr3 73292958 73293148 -154231430 - MIR SINE MIR -57 205 13 24 0 0 0 chr3 73293802 73293826 -154230752 + AT_rich Low_complexity Low_complexity 1 24 0 1505 261 65 11 chr3 73294687 73295151 -154229427 - MLT1H LTR MaLR 0 549 61 711 305 116 42 chr3 73296324 73296858 -154227720 + L2 LINE L2 2456 3025 -247 198 0 0 0 chr3 73297022 73297044 -154227534 + (A)n Simple_repeat Simple_repeat 1 22 0 529 347 54 28 chr3 73297102 73297491 -154227087 - L2 LINE L2 -469 2845 2447 529 281 95 22 chr3 73298145 73298376 -154226202 + MIR SINE MIR 15 262 0 21 36 0 0 chr3 73298379 73298407 -154226171 + AT_rich Low_complexity Low_complexity 1 28 0 215 329 160 25 chr3 73298463 73298782 -154225796 + L2 LINE L2 2820 3181 -132 190 260 20 0 chr3 73298809 73298859 -154225719 + L2 LINE L2 3248 3298 -15 22 35 0 0 chr3 73301970 73301999 -154222579 + AT_rich Low_complexity Low_complexity 1 29 0 840 189 86 127 chr3 73302228 73302422 -154222156 - L1MC5 LINE L1 -236 7725 7525 2154 103 3 6 chr3 73302422 73302734 -154221844 - L1PA13 LINE L1 0 6163 5853 840 189 86 127 chr3 73302734 73303113 -154221465 - L1MC5 LINE L1 -436 7525 7178 1214 205 112 35 chr3 73303113 73303460 -154221118 - MLT1A2 LTR MaLR 0 374 1 840 189 86 127 chr3 73303460 73303513 -154221065 - L1MC5 LINE L1 -783 7178 7124 237 65 0 0 chr3 73303513 73303544 -154221034 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 996 183 0 82 chr3 73303547 73303766 -154220812 - AluJb SINE Alu -26 286 86 450 274 42 0 chr3 73303766 73303934 -154220644 - L1MC5 LINE L1 -826 7135 6961 621 292 24 0 chr3 73303987 73304155 -154220423 + MIR SINE MIR 78 249 -13 2234 100 20 0 chr3 73304440 73304740 -154219838 + AluSp SINE Alu 1 306 -7 216 0 0 0 chr3 73305014 73305038 -154219540 + (CA)n Simple_repeat Simple_repeat 1 24 0 1689 170 22 0 chr3 73305053 73305352 -154219226 + AluSx SINE Alu 8 312 0 24 0 0 0 chr3 73305588 73305612 -154218966 + AT_rich Low_complexity Low_complexity 1 24 0 342 320 109 40 chr3 73306542 73306917 -154217661 - L1ME4a LINE L1 -5 6116 5716 232 278 22 22 chr3 73307387 73307477 -154217101 + MLT1J LTR MaLR 403 492 -19 398 225 108 39 chr3 73308812 73308941 -154215637 + MIR SINE MIR 60 197 -65 202 200 40 0 chr3 73308983 73309033 -154215545 + (TTA)n Simple_repeat Simple_repeat 2 53 0 497 266 29 0 chr3 73309353 73309492 -154215086 - MER58B DNA MER1_type -6 335 193 334 345 46 67 chr3 73309614 73309898 -154214680 + L2 LINE L2 2900 3177 -95 252 0 0 0 chr3 73309905 73309933 -154214645 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 368 307 86 7 chr3 73309946 73310086 -154214492 - L2 LINE L2 -9 3304 3154 614 301 107 37 chr3 73310364 73310823 -154213755 - LTR16C LTR ERVL 0 491 1 189 195 0 0 chr3 73310838 73310879 -154213699 + (TGAG)n Simple_repeat Simple_repeat 3 43 0 458 278 9 0 chr3 73310970 73311085 -154213493 - MER63A DNA MER1_type -44 166 51 302 224 12 0 chr3 73312437 73312522 -154212056 + GA-rich Low_complexity Low_complexity 1 86 0 904 124 0 40 chr3 73312523 73312849 -154211729 + (GGAA)n Simple_repeat Simple_repeat 1 312 0 233 242 73 107 chr3 73313210 73313388 -154211190 + L2 LINE L2 3137 3308 -5 411 222 103 17 chr3 73313398 73313515 -154211063 - MIR SINE MIR -62 146 20 2439 160 104 58 chr3 73313848 73314435 -154210143 - LTR18B LTR ERVL 0 614 1 213 366 11 0 chr3 73314883 73314976 -154209602 + MIR SINE MIR 157 250 -12 267 321 49 0 chr3 73315117 73315198 -154209380 - MIR SINE MIR -70 192 108 365 263 0 0 chr3 73315695 73315790 -154208788 - MIR SINE MIR 0 262 168 252 86 0 0 chr3 73315858 73315893 -154208685 + (CA)n Simple_repeat Simple_repeat 1 35 0 284 254 17 0 chr3 73316185 73316244 -154208334 - MIR SINE MIR -119 143 84 243 272 26 18 chr3 73316836 73316950 -154207628 - L1ME4a LINE L1 -46 6075 5961 222 208 0 0 chr3 73317855 73317903 -154206675 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 557 301 25 60 chr3 73319365 73319684 -154204894 + L1ME4a LINE L1 5466 5773 -2035 319 290 50 85 chr3 73319780 73320039 -154204539 + L1ME4a LINE L1 5869 6118 -3 348 299 88 15 chr3 73321019 73321156 -154203422 - MIR SINE MIR -10 252 106 258 361 79 8 chr3 73321361 73321602 -154202976 - L2 LINE L2 -883 2431 2174 309 65 0 0 chr3 73321742 73321788 -154202790 + L1PA8 LINE L1 6123 6168 -4 22 0 0 0 chr3 73321791 73321813 -154202765 + AT_rich Low_complexity Low_complexity 1 22 0 1435 148 0 0 chr3 73322434 73322630 -154201948 - AluSx SINE Alu -116 196 1 1198 282 49 5 chr3 73322651 73323020 -154201558 + LTR16C LTR ERVL 107 491 0 205 254 0 0 chr3 73323055 73323110 -154201468 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 671 281 66 15 chr3 73323654 73323850 -154200728 + MIR SINE MIR 23 228 -34 457 307 7 0 chr3 73324955 73325092 -154199486 + MIR SINE MIR 105 242 -20 970 289 84 14 chr3 73325447 73325814 -154198764 - LTR16C LTR ERVL 0 491 99 279 352 0 64 chr3 73325984 73326109 -154198469 - L2 LINE L2 -20 3252 3136 216 214 0 0 chr3 73326122 73326164 -154198414 + (TA)n Simple_repeat Simple_repeat 2 43 0 740 316 66 15 chr3 73326410 73326978 -154197600 - L2 LINE L2 -161 3152 2549 2034 129 3 13 chr3 73327170 73327473 -154197105 - AluSx SINE Alu -1 311 12 225 271 35 24 chr3 73327668 73327753 -154196825 - LTR33A LTR ERVL -3 520 435 311 239 0 0 chr3 73327866 73327933 -154196645 + MER58 DNA MER1_type 35 101 -114 2107 121 7 0 chr3 73327953 73328242 -154196336 - AluSx SINE Alu -21 291 1 394 169 0 36 chr3 73328261 73328344 -154196234 + MER58 DNA MER1_type 2317 2396 -24 514 281 99 32 chr3 73328368 73328681 -154195897 - LTR33A LTR ERVL -168 355 22 216 298 88 0 chr3 73328713 73328770 -154195808 + MIR3 SINE MIR 109 170 -38 293 239 49 103 chr3 73329926 73329954 -154194624 + MER5A DNA MER1_type 38 66 -123 2215 105 10 13 chr3 73329954 73330259 -154194319 + AluSx SINE Alu 1 304 -8 293 239 49 103 chr3 73330259 73330380 -154194198 + MER5A DNA MER1_type 66 189 0 954 106 0 0 chr3 73330815 73330956 -154193622 + (TA)n Simple_repeat Simple_repeat 1 141 0 207 186 0 0 chr3 73330963 73331006 -154193572 + (CAT)n Simple_repeat Simple_repeat 2 44 0 704 269 29 29 chr3 73331017 73331259 -154193319 - MIR SINE MIR -16 246 5 1895 179 20 31 chr3 73332161 73332553 -154192025 + L1MC1 LINE L1 5942 6329 -4 31 82 0 0 chr3 73332681 73332754 -154191824 + AT_rich Low_complexity Low_complexity 1 73 0 349 227 25 50 chr3 73332815 73332934 -154191644 - L1MC/D LINE L1 -2016 5792 5677 446 259 92 0 chr3 73332943 73333074 -154191504 - L1MC/D LINE L1 -495 5626 5484 188 300 62 38 chr3 73333305 73333385 -154191193 - L2 LINE L2 -39 3274 3193 842 285 114 49 chr3 73334705 73335253 -154189325 - L2 LINE L2 -1 3312 2681 884 144 0 0 chr3 73335253 73335385 -154189193 + FLAM_C SINE Alu 1 132 -1 842 285 114 49 chr3 73335385 73335774 -154188804 - L2 LINE L2 -632 2681 2319 208 339 16 0 chr3 73336273 73336335 -154188243 - L2 LINE L2 -87 3185 3123 25 31 0 0 chr3 73336409 73336441 -154188137 + AT_rich Low_complexity Low_complexity 1 32 0 311 151 35 47 chr3 73336542 73336628 -154187950 + MER113 DNA MER1_type? 39 123 -398 188 389 102 25 chr3 73336791 73336948 -154187630 + MIR SINE MIR 48 216 -46 461 287 53 16 chr3 73337320 73337508 -154187070 + MIR SINE MIR 68 262 0 234 167 0 0 chr3 73337582 73337618 -154186960 + MIR SINE MIR 156 191 -71 1633 190 0 43 chr3 73337618 73337988 -154186590 + AluJb SINE Alu 1 356 0 201 222 0 0 chr3 73337998 73338034 -154186544 + L2 LINE L2 3261 3296 -17 1298 139 46 50 chr3 73338332 73338635 -154185943 + MER33 DNA MER1_type 23 324 0 3174 168 29 47 chr3 73338649 73339858 -154184720 - L1MC1 LINE L1 -8 6325 5169 27 62 0 0 chr3 73340277 73340325 -154184253 + AT_rich Low_complexity Low_complexity 1 48 0 22 56 0 0 chr3 73340520 73340556 -154184022 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr3 73341073 73341098 -154183480 + AT_rich Low_complexity Low_complexity 1 25 0 271 217 296 0 chr3 73341519 73341634 -154182944 - MIR SINE MIR -12 250 102 297 232 0 0 chr3 73341635 73341704 -154182874 - MER116 DNA Mariner 0 80 12 200 329 14 43 chr3 73341724 73341794 -154182784 - MIR SINE MIR -163 99 32 339 206 9 19 chr3 73342497 73342604 -154181974 + CT-rich Low_complexity Low_complexity 2 107 0 474 229 9 0 chr3 73342968 73343073 -154181505 - MER103 DNA DNA -58 108 3 918 120 0 0 chr3 73343465 73343598 -154180980 + AluSg/x SINE Alu 178 310 0 265 229 95 9 chr3 73343611 73343716 -154180862 + L1MC4a LINE L1 7131 7244 -564 810 165 15 198 chr3 73343722 73344122 -154180456 + L1MC4a LINE L1 7339 7665 -143 236 226 107 0 chr3 73344131 73344215 -154180363 + L1MD3 LINE L1 7893 7985 -10 878 180 146 48 chr3 73344277 73344572 -154180006 - MER33 DNA MER1_type 0 324 1 308 193 198 99 chr3 73344662 73344854 -154179724 - L2 LINE L2 -1 3312 3102 219 218 0 0 chr3 73345525 73345580 -154178998 + (TA)n Simple_repeat Simple_repeat 1 55 0 257 286 0 6 chr3 73345613 73345784 -154178794 + (TA)n Simple_repeat Simple_repeat 1 170 0 237 169 14 28 chr3 73346345 73346416 -154178162 + CT-rich Low_complexity Low_complexity 4 73 0 233 119 24 0 chr3 73347337 73347379 -154177199 + (TG)n Simple_repeat Simple_repeat 2 44 0 422 302 62 22 chr3 73347381 73347560 -154177018 + MER5A DNA MER1_type 1 186 -3 * 425 304 12 48 chr3 73347406 73347574 -154177004 - MER5A DNA MER1_type -22 167 6 342 222 75 104 chr3 73348480 73348692 -154175886 - MLT1K LTR MaLR -5 583 378 1589 177 57 91 chr3 73348794 73349290 -154175288 + MLT1D LTR MaLR 26 504 -1 21 36 0 0 chr3 73350523 73350551 -154174027 + AT_rich Low_complexity Low_complexity 1 28 0 367 234 52 94 chr3 73350591 73350783 -154173795 - L1MC/D LINE L1 -2030 5778 5595 375 254 87 14 chr3 73351902 73352040 -154172538 + MIR SINE MIR 103 250 -12 191 415 37 0 chr3 73352515 73352597 -154171981 - L2 LINE L2 -87 3185 3101 186 290 130 14 chr3 73353247 73353316 -154171262 + MIR SINE MIR 47 123 -139 417 273 45 23 chr3 73353318 73353450 -154171128 - MIR SINE MIR -10 252 118 768 127 8 8 chr3 73353465 73353599 -154170979 + L1P4 LINE L1 5622 5755 -410 * 1741 141 10 0 chr3 73353588 73353886 -154170692 - L1P LINE L1 -2161 3985 3685 399 314 64 0 chr3 73353909 73354065 -154170513 + MIR SINE MIR 31 196 -66 348 215 66 106 chr3 73354481 73354783 -154169795 - L1ME4a LINE L1 -16 6105 5816 2485 71 0 0 chr3 73355052 73355346 -154169232 + AluSg SINE Alu 1 294 -16 215 284 15 30 chr3 73355398 73355465 -154169113 - MIR SINE MIR -176 86 21 255 285 117 62 chr3 73355754 73355933 -154168645 + MER5A DNA MER1_type 1 189 0 579 268 0 7 chr3 73356011 73356153 -154168425 - MIR SINE MIR -10 252 112 455 174 28 18 chr3 73356333 73356442 -154168136 - LTR33 LTR ERVL -1 520 411 615 172 32 25 chr3 73356478 73356635 -154167943 - LTR33 LTR ERVL -345 176 19 257 341 16 8 chr3 73356635 73356761 -154167817 + MIR SINE MIR 93 219 -43 191 323 31 31 chr3 73356849 73356945 -154167633 + MIR SINE MIR 59 154 -108 627 292 141 20 chr3 73357296 73357687 -154166891 - L2 LINE L2 -353 2961 2524 290 208 28 0 chr3 73357833 73357905 -154166673 + LTR33 LTR ERVL 2 75 -446 381 43 0 0 chr3 73358993 73359040 -154165538 + (TG)n Simple_repeat Simple_repeat 1 47 0 252 0 0 0 chr3 73359039 73359067 -154165511 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 580 253 28 28 chr3 73359449 73359627 -154164951 + MER5B DNA MER1_type 1 178 0 1584 155 116 69 chr3 73359977 73360384 -154164194 - MSTB1 LTR MaLR -2 430 5 485 316 6 19 chr3 73360524 73360682 -154163896 + L2 LINE L2 3154 3309 -4 690 266 30 0 chr3 73360682 73360919 -154163659 - MER113 DNA MER1_type? -276 245 2 378 326 128 28 chr3 73361015 73361334 -154163244 - L2 LINE L2 -8 3264 2914 475 228 19 25 chr3 73362422 73362580 -154161998 + MER103 DNA DNA 9 165 -1 1162 182 127 65 chr3 73363308 73363632 -154160946 + MER2 DNA MER2_type 1 344 0 673 276 102 51 chr3 73364001 73364294 -154160284 + MER45C DNA AcHobo 496 803 -150 399 182 0 13 chr3 73364348 73364425 -154160153 + MER45C DNA AcHobo 878 953 0 227 297 14 97 chr3 73364607 73364752 -154159826 + MIR SINE MIR 126 258 -4 225 188 282 0 chr3 73364824 73364909 -154159669 - MER5A DNA MER1_type -77 112 4 1669 241 41 26 chr3 73365359 73365819 -154158759 - MLT1C LTR MaLR 0 467 1 686 272 68 5 chr3 73366404 73366595 -154157983 + MIR SINE MIR 60 262 0 191 152 22 0 chr3 73367180 73367226 -154157352 + (TA)n Simple_repeat Simple_repeat 1 47 0 240 244 0 26 chr3 73367298 73367376 -154157202 + L1MC4 LINE L1 6621 6696 -1346 22 0 0 0 chr3 73367543 73367565 -154157013 + AT_rich Low_complexity Low_complexity 1 22 0 224 306 51 66 chr3 73367771 73367967 -154156611 + L2 LINE L2 2763 2955 -359 3090 149 14 22 chr3 73367968 73368614 -154155964 - L1MB8 LINE L1 0 6178 5429 197 367 33 11 chr3 73368614 73368704 -154155874 + L2 LINE L2 2968 3059 -213 199 313 0 60 chr3 73368745 73368828 -154155750 + L2 LINE L2 3142 3219 -53 2184 102 0 0 chr3 73368828 73369156 -154155422 - AluSq SINE Alu 0 328 1 491 292 17 8 chr3 73369548 73369668 -154154910 - MER5A DNA MER1_type -62 127 7 350 294 78 0 chr3 73369725 73369827 -154154751 + MIR SINE MIR 18 127 -135 5128 170 51 12 chr3 73369927 73370670 -154153908 - L1PA16 LINE L1 0 6166 5454 2467 71 3 3 chr3 73370670 73370980 -154153598 - AluSp SINE Alu -3 310 1 5128 170 51 12 chr3 73370980 73372196 -154152382 - L1PA16 LINE L1 -712 5454 4124 813 305 78 55 chr3 73372657 73373231 -154151347 - L2 LINE L2 0 3313 2707 526 292 66 17 chr3 73374204 73374492 -154150086 + Charlie2 DNA MER1_type 24 325 -2537 2206 229 77 30 chr3 73374494 73374837 -154149741 + Charlie2 DNA MER1_type 1856 2181 -681 1502 199 124 31 chr3 73374837 73375255 -154149323 + MSTB2 LTR MaLR 1 457 0 2206 229 77 30 chr3 73375255 73375291 -154149287 + Charlie2 DNA MER1_type 2181 2214 -648 1645 190 23 16 chr3 73375291 73375596 -154148982 - AluJb SINE Alu -5 307 1 2206 229 77 30 chr3 73375596 73376025 -154148553 + Charlie2 DNA MER1_type 2214 2719 -143 1753 160 6 35 chr3 73376025 73376337 -154148241 - AluJb SINE Alu -9 303 1 2206 229 77 30 chr3 73376337 73376471 -154148107 + Charlie2 DNA MER1_type 2719 2845 -17 259 332 130 34 chr3 73377859 73378121 -154146457 + L2 LINE L2 3026 3312 -1 223 257 54 0 chr3 73379406 73379480 -154145098 - MIR SINE MIR -15 247 170 1682 177 40 54 chr3 73379480 73379909 -154144669 - MSTB1 LTR MaLR 0 432 10 351 223 160 11 chr3 73379918 73380012 -154144566 - MIR SINE MIR -89 173 66 1834 192 11 25 chr3 73380448 73380886 -154143692 + L1MB7 LINE L1 4756 5187 -959 831 158 0 29 chr3 73380886 73381025 -154143553 + AluJb SINE Alu 1 135 -177 3831 164 57 45 chr3 73381044 73382058 -154142520 + L1MB7 LINE L1 5158 6184 0 416 287 75 120 chr3 73382107 73382508 -154142070 + L2 LINE L2 2890 3272 0 224 258 0 32 chr3 73383130 73383192 -154141386 - L2 LINE L2 -74 3239 3180 502 253 47 61 chr3 73383342 73383756 -154140822 + MLT1I LTR MaLR 23 549 0 1049 314 26 8 chr3 73384525 73384913 -154139665 - LTR16C LTR ERVL 0 491 97 391 229 27 179 chr3 73385001 73385302 -154139276 - MIR SINE MIR -1 261 7 404 105 13 0 chr3 73385794 73385870 -154138708 + (CA)n Simple_repeat Simple_repeat 2 78 0 362 322 169 12 chr3 73385872 73386114 -154138464 + MLT1K LTR MaLR 150 429 -159 329 211 56 0 chr3 73386985 73387056 -154137522 - L2 LINE L2 -10 3262 3188 223 367 0 0 chr3 73387657 73387717 -154136861 + L2 LINE L2 3208 3267 -5 558 199 14 7 chr3 73387835 73387976 -154136602 - Charlie1 DNA MER1_type 0 2761 2620 * 786 254 10 5 chr3 73387965 73388162 -154136416 - Charlie1 DNA MER1_type -2529 232 35 186 43 0 0 chr3 73388431 73388454 -154136124 + (TTTTTG)n Simple_repeat Simple_repeat 1 23 0 417 333 29 25 chr3 73388847 73389051 -154135527 - L2 LINE L2 -445 2869 2665 411 231 21 91 chr3 73389759 73389902 -154134676 - MIR SINE MIR -65 197 65 567 62 111 0 chr3 73390342 73390423 -154134155 + 5S rRNA rRNA 1 90 -31 229 316 50 58 chr3 73392718 73392857 -154131721 + MIR SINE MIR 122 259 -3 249 217 101 14 chr3 73393016 73393085 -154131493 + L2 LINE L2 3198 3272 0 693 153 0 68 chr3 73393922 73394053 -154130525 - L1M LINE L1 -755 5425 5307 2322 101 0 0 chr3 73394053 73394359 -154130219 - AluSc SINE Alu -3 306 1 693 153 0 68 chr3 73394359 73394403 -154130175 - L1M LINE L1 -873 5307 5262 238 269 51 0 chr3 73394422 73394500 -154130078 - MIR SINE MIR -67 195 114 998 265 21 49 chr3 73394522 73394911 -154129667 - L2 LINE L2 0 3313 2936 3999 196 73 26 chr3 73395008 73395176 -154129402 - L1MD1 LINE L1 -4 6632 6473 2171 100 0 35 chr3 73395176 73395486 -154129092 + AluSq SINE Alu 2 300 -13 3999 196 73 26 chr3 73395486 73396510 -154128068 - L1MD1 LINE L1 -163 6473 5346 1960 118 64 10 chr3 73396510 73396806 -154127772 + AluSx SINE Alu 1 312 0 3999 196 73 26 chr3 73396806 73397165 -154127413 - L1MD1 LINE L1 -1290 5346 5005 1224 188 4 0 chr3 73397172 73397411 -154127167 - L1P LINE L1 -1052 5094 4855 2850 94 12 0 chr3 73397411 73397809 -154126769 + L1PA13 LINE L1 5752 6162 -1 4873 207 100 27 chr3 73397856 73398000 -154126578 - L1MD1 LINE L1 -4427 2113 1981 2059 128 56 17 chr3 73398000 73398358 -154126220 - THE1C LTR MaLR -3 372 1 4873 207 100 27 chr3 73398358 73400106 -154124472 - L1MD1 LINE L1 -4559 1981 3 488 16 16 0 chr3 73400326 73400387 -154124191 + (TCTA)n Simple_repeat Simple_repeat 3 64 0 1596 116 0 33 chr3 73400512 73400787 -154123791 + L1PA16 LINE L1 5901 6166 0 905 138 0 6 chr3 73403160 73403320 -154121258 + (TTCC)n Simple_repeat Simple_repeat 2 160 0 375 121 0 0 chr3 73403423 73403481 -154121097 + (TCCC)n Simple_repeat Simple_repeat 4 61 0 1171 93 0 11 chr3 73403492 73403674 -154120904 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 830 277 175 25 chr3 73403698 73404092 -154120486 - L2 LINE L2 -2 3311 2859 201 324 68 0 chr3 73404345 73404419 -154120159 - L2 LINE L2 -822 2492 2414 182 296 0 0 chr3 73404658 73404702 -154119876 - L2 LINE L2 -43 3229 3186 254 244 0 115 chr3 73404858 73404936 -154119642 - L2 LINE L2 -299 2973 2906 386 278 98 72 chr3 73405007 73405313 -154119265 - MER102b DNA MER1_type 0 341 28 923 224 20 0 chr3 73405579 73405780 -154118798 - MER3 DNA MER1_type -4 205 1 223 373 34 25 chr3 73405780 73405898 -154118680 + L2 LINE L2 3189 3307 -6 766 278 5 11 chr3 73406417 73406604 -154117974 - MIR SINE MIR -70 192 7 370 243 28 19 chr3 73406602 73406709 -154117869 + MIR SINE MIR 75 182 -80 * 551 284 62 53 chr3 73406764 73406956 -154117622 + L1MC/D LINE L1 5373 5571 -2237 1445 214 43 51 chr3 73406956 73407349 -154117229 - MLT1B LTR MaLR 0 390 1 551 284 62 53 chr3 73407349 73407511 -154117067 + L1MC/D LINE L1 5571 5730 -2078 922 227 103 0 chr3 73407553 73407756 -154116822 - MER58A DNA MER1_type 0 224 1 180 111 0 0 chr3 73407773 73407800 -154116778 + (TATATG)n Simple_repeat Simple_repeat 2 28 0 276 30 0 0 chr3 73407800 73407833 -154116745 + (CA)n Simple_repeat Simple_repeat 2 34 0 279 0 0 0 chr3 73407950 73407981 -154116597 + (CA)n Simple_repeat Simple_repeat 2 32 0 716 289 61 0 chr3 73408047 73408264 -154116314 - MIR SINE MIR -10 252 22 613 198 120 42 chr3 73408347 73408564 -154116014 - MER106A DNA MER1_type 0 236 3 1953 142 0 7 chr3 73409412 73409707 -154114871 + AluSx SINE Alu 5 297 -15 634 229 29 35 chr3 73410409 73410579 -154113999 - L2 LINE L2 -4 3309 3141 205 308 108 0 chr3 73410589 73410654 -154113924 + L2 LINE L2 3141 3212 -60 22 99 0 0 chr3 73410933 73411004 -154113574 + AT_rich Low_complexity Low_complexity 1 71 0 1048 232 75 55 chr3 73411022 73411406 -154113172 + MLT1D LTR MaLR 1 392 -113 215 290 108 21 chr3 73411414 73411507 -154113071 - MIR SINE MIR -75 133 33 508 301 35 43 chr3 73412799 73413055 -154111523 + MIR SINE MIR 7 260 -2 541 246 127 0 chr3 73413098 73413240 -154111338 + MIR SINE MIR 100 259 -3 189 0 0 0 chr3 73413350 73413371 -154111207 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 751 323 70 13 chr3 73413431 73413818 -154110760 + LTR16C LTR ERVL 1 409 -82 219 264 44 33 chr3 73413877 73413968 -154110610 + MIR SINE MIR 138 229 -33 364 194 0 0 chr3 73414230 73414292 -154110286 + L2 LINE L2 3248 3309 -4 424 232 36 0 chr3 73414326 73414438 -154110140 - L1MD2 LINE L1 -40 6319 6204 539 331 104 29 chr3 73414438 73414950 -154109628 + L2 LINE L2 2689 3241 -72 2607 188 67 91 chr3 73414987 73415077 -154109501 + L1PA8 LINE L1 5428 5519 -653 1879 160 3 6 chr3 73415077 73415390 -154109188 + AluSx SINE Alu 1 312 0 2607 188 67 91 chr3 73415390 73416058 -154108520 + L1PA8 LINE L1 5519 6168 -4 420 312 82 47 chr3 73416520 73416885 -154107693 + LTR16C LTR ERVL 112 489 -2 432 311 40 0 chr3 73416885 73417033 -154107545 - MIR SINE MIR -20 242 89 182 283 50 0 chr3 73417186 73417246 -154107332 - MIR SINE MIR -184 78 16 2324 73 0 0 chr3 73417378 73417665 -154106913 + AluY SINE Alu 13 299 -12 336 344 127 27 chr3 73418101 73418669 -154105909 + L2 LINE L2 2645 3271 -1 460 323 147 5 chr3 73420652 73420850 -154103728 - MIR SINE MIR -3 259 34 342 178 267 44 chr3 73420962 73421097 -154103481 - MER113 DNA MER1_type? -304 217 53 317 288 43 71 chr3 73421839 73422023 -154102555 + MIR SINE MIR 72 250 -12 261 0 0 0 chr3 73422080 73422109 -154102469 + (T)n Simple_repeat Simple_repeat 1 29 0 201 318 12 47 chr3 73422273 73422358 -154102220 - L2 LINE L2 -17 3255 3174 1271 145 8 60 chr3 73422523 73422758 -154101820 + AluJo SINE Alu 88 310 -2 423 163 0 0 chr3 73422770 73422850 -154101728 + GA-rich Low_complexity Low_complexity 5 84 0 422 313 14 14 chr3 73423441 73423588 -154100990 - MIR SINE MIR -11 251 105 272 206 0 16 chr3 73424671 73424734 -154099844 + MLT1K LTR MaLR 525 586 -2 2160 115 0 10 chr3 73425791 73426095 -154098483 - AluSx SINE Alu -11 301 1 730 271 64 40 chr3 73426788 73427039 -154097539 - MIR SINE MIR 0 262 6 240 111 0 0 chr3 73427097 73427133 -154097445 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 473 224 214 20 chr3 73427213 73427409 -154097169 - MIR SINE MIR 0 262 29 873 265 24 0 chr3 73428736 73428947 -154095631 - MIR SINE MIR -10 252 37 1590 190 3 30 chr3 73429011 73429306 -154095272 + AluJo SINE Alu 23 309 -3 21 0 0 0 chr3 73429322 73429343 -154095235 + AT_rich Low_complexity Low_complexity 1 21 0 753 298 13 13 chr3 73429500 73429735 -154094843 + MIR SINE MIR 17 251 -11 627 325 162 8 chr3 73429843 73430225 -154094353 + L2 LINE L2 2870 3310 -3 265 165 3 0 chr3 73430293 73430346 -154094232 + L2 LINE L2 2930 2981 -291 623 311 192 9 chr3 73430364 73430702 -154093876 + L2 LINE L2 2914 3313 0 12109 195 27 17 chr3 73431023 73434375 -154090203 + L1PA15 LINE L1 2795 6163 -2 2376 88 3 3 chr3 73434423 73434729 -154089849 - AluSp SINE Alu -7 306 1 1981 133 21 44 chr3 73434835 73435219 -154089359 - THE1C LTR MaLR 0 375 1 516 290 27 0 chr3 73435247 73435433 -154089145 - LTR33 LTR ERVL -305 216 26 512 179 172 8 chr3 73435485 73435619 -154088959 - MIR SINE MIR -13 249 94 586 239 121 66 chr3 73435726 73436062 -154088516 + MER113 DNA MER1_type? 4 369 -152 2966 147 71 33 chr3 73436062 73436640 -154087938 - MER7C DNA MER2_type -2 600 1 586 239 121 66 chr3 73436640 73436725 -154087853 + MER113 DNA MER1_type? 369 448 -73 215 203 27 81 chr3 73437060 73437134 -154087444 - MIR SINE MIR -62 146 84 693 255 52 58 chr3 73438136 73438501 -154086077 - MER113 DNA MER1_type? -72 449 87 959 164 57 79 chr3 73438543 73438860 -154085718 - MER33 DNA MER1_type -14 310 1 323 252 9 30 chr3 73439301 73439543 -154085035 + GA-rich Low_complexity Low_complexity 1 236 0 1000 57 0 0 chr3 73439594 73439718 -154084860 + L1PA3 LINE L1 6023 6146 -9 905 74 0 69 chr3 73439718 73440004 -154084574 + (TA)n Simple_repeat Simple_repeat 1 266 0 374 380 16 0 chr3 73440030 73440151 -154084427 - MIR SINE MIR -17 245 123 270 194 0 0 chr3 73440946 73441008 -154083570 + (ATG)n Simple_repeat Simple_repeat 3 64 0 483 245 190 6 chr3 73441040 73441203 -154083375 - MIR SINE MIR -54 208 16 632 311 70 9 chr3 73441277 73441505 -154083073 - MIR SINE MIR -4 258 17 459 290 161 19 chr3 73441523 73441735 -154082843 - MIR SINE MIR -11 251 8 257 322 42 7 chr3 73442547 73442690 -154081888 - MIR SINE MIR -13 249 102 * 393 273 136 20 chr3 73442671 73442869 -154081709 + MIR SINE MIR 5 225 -37 208 98 0 59 chr3 73442994 73443045 -154081533 + (TTTA)n Simple_repeat Simple_repeat 1 48 0 1355 235 61 28 chr3 73443365 73443761 -154080817 - MLT1C LTR MaLR 0 467 59 14655 24 1 0 chr3 73443786 73446244 -154078334 - L1PA2 LINE L1 0 6155 3661 374 247 172 40 chr3 73446249 73446423 -154078155 - L2 LINE L2 0 3313 3117 22 70 0 0 chr3 73447658 73447701 -154076877 + AT_rich Low_complexity Low_complexity 1 43 0 710 185 0 0 chr3 73447814 73447933 -154076645 + FAM SINE Alu 4 122 -63 331 232 61 20 chr3 73448348 73448447 -154076131 + MIR SINE MIR 106 208 -54 198 239 149 15 chr3 73448918 73448985 -154075593 + L2 LINE L2 3154 3229 -43 185 65 32 0 chr3 73449003 73449034 -154075544 + (TA)n Simple_repeat Simple_repeat 1 32 0 261 0 0 0 chr3 73449037 73449066 -154075512 + (CA)n Simple_repeat Simple_repeat 2 30 0 403 344 85 9 chr3 73449807 73450019 -154074559 + MIR SINE MIR 35 262 0 509 257 204 7 chr3 73450706 73450858 -154073720 - MER5A DNA MER1_type -4 185 4 189 262 0 0 chr3 73451031 73451073 -154073505 - MIR SINE MIR -10 252 211 431 241 51 51 chr3 73451090 73451285 -154073293 + HERVH LTR ERV1 3797 3991 -3722 * 1192 271 10 44 chr3 73451274 73451809 -154072769 + HERVH LTR ERV1 3919 4432 -2299 1241 193 54 88 chr3 73452343 73452809 -154071769 + LTR7 LTR ERV1 1 450 0 735 255 60 5 chr3 73452810 73452994 -154071584 - MIR SINE MIR -57 205 12 656 288 92 9 chr3 73454649 73454878 -154069700 + MIR SINE MIR 4 251 -11 420 20 0 0 chr3 73455883 73455932 -154068646 + (TG)n Simple_repeat Simple_repeat 2 50 0 1113 304 10 55 chr3 73456059 73456477 -154068101 - L2 LINE L2 -10 3303 2905 213 256 201 35 chr3 73456611 73456810 -154067768 - L2 LINE L2 -666 2648 2417 190 323 20 50 chr3 73457446 73457545 -154067033 - MIR SINE MIR -166 96 1 325 302 52 0 chr3 73457606 73457722 -154066856 + MIR SINE MIR 127 248 -14 224 194 32 81 chr3 73458394 73458456 -154066122 + L2 LINE L2 3206 3264 -8 283 265 24 36 chr3 73458804 73458887 -154065691 + L3 LINE CR1 605 686 -891 2269 110 0 7 chr3 73458902 73459211 -154065367 - AluSc SINE Alu -2 307 1 1147 163 6 0 chr3 73459313 73459491 -154065087 + AluSc SINE Alu 120 298 -11 1947 176 52 63 chr3 73459527 73460049 -154064529 + L1MB3 LINE L1 5323 5838 -345 991 230 39 0 chr3 73460036 73460293 -154064285 + L1ME LINE L1 5523 5789 -375 * 409 278 98 44 chr3 73460611 73460816 -154063762 + MIR SINE MIR 11 226 -36 189 0 0 0 chr3 73460837 73460858 -154063720 + (TTA)n Simple_repeat Simple_repeat 1 21 0 312 388 73 0 chr3 73461145 73461310 -154063268 + MIR SINE MIR 47 223 -39 39 38 0 0 chr3 73461353 73461406 -154063172 + AT_rich Low_complexity Low_complexity 1 53 0 183 129 0 0 chr3 73462344 73462375 -154062203 + (CAT)n Simple_repeat Simple_repeat 3 33 0 787 269 117 27 chr3 73462390 73462791 -154061787 + LTR33 LTR ERVL 15 451 -70 456 306 111 6 chr3 73462848 73463050 -154061528 - MIR SINE MIR -41 221 4 45318 36 3 4 chr3 73463102 73469268 -154055310 + L1PA4 LINE L1 1 6155 0 694 343 52 30 chr3 73469847 73470477 -154054101 + L2 LINE L2 2619 3266 -6 190 316 137 34 chr3 73471391 73471508 -154053070 - MIR3 SINE MIR -30 178 50 411 313 163 29 chr3 73471647 73472155 -154052423 + L2 LINE L2 2637 3230 -42 461 249 189 47 chr3 73472159 73472508 -154052070 - MLT1J1 LTR MaLR -4 442 76 552 295 5 50 chr3 73472797 73472997 -154051581 - MIR3 SINE MIR -1 207 17 236 302 142 0 chr3 73473902 73474008 -154050570 + MIR3 SINE MIR 1 121 -87 1290 144 95 39 chr3 73474313 73474619 -154049959 + MER33 DNA MER1_type 2 324 0 350 271 0 51 chr3 73474813 73474931 -154049647 + MIR SINE MIR 92 203 -59 360 214 92 69 chr3 73474980 73475111 -154049467 + L2 LINE L2 3176 3309 -4 247 281 71 103 chr3 73475918 73476254 -154048324 + L2 LINE L2 2731 3067 -246 248 53 26 0 chr3 73476333 73476371 -154048207 + (TA)n Simple_repeat Simple_repeat 2 40 0 215 321 0 0 chr3 73476439 73476492 -154048086 + L2 LINE L2 3176 3228 -85 762 161 0 8 chr3 73476515 73476633 -154047945 - FLAM_C SINE Alu -25 118 2 473 253 98 23 chr3 73476798 73476972 -154047606 - L2 LINE L2 0 3313 3127 381 290 81 0 chr3 73477234 73477358 -154047220 + L2 LINE L2 3180 3313 0 341 253 13 0 chr3 73477362 73477437 -154047141 - MIR SINE MIR -69 139 64 426 306 125 61 chr3 73477892 73478189 -154046389 - L2 LINE L2 -6 3266 2951 671 320 62 58 chr3 73478335 73478816 -154045762 - L2 LINE L2 -614 2700 2218 236 254 114 9 chr3 73478861 73478975 -154045603 + MER113 DNA MER1_type? 4 129 -392 274 222 13 18 chr3 73479343 73479409 -154045169 + L1MD2 LINE L1 6227 7933 -62 256 256 116 23 chr3 73479453 73479582 -154044996 + L1ME4a LINE L1 5959 6099 -22 490 298 63 39 chr3 73481097 73481352 -154043226 + MIR SINE MIR 2 262 0 2619 150 26 12 chr3 73481373 73481799 -154042779 + MSTB1 LTR MaLR 1 432 0 348 297 117 31 chr3 73482324 73482452 -154042126 - L2 LINE L2 0 3272 3134 861 199 46 54 chr3 73482565 73482662 -154041916 + L1ME1 LINE L1 5923 6019 -147 2098 99 11 11 chr3 73482662 73482984 -154041594 - AluSq SINE Alu 0 322 1 861 199 46 54 chr3 73482984 73483126 -154041452 + L1ME1 LINE L1 6019 6161 -5 184 398 10 0 chr3 73483499 73483602 -154040976 - MIR SINE MIR -103 159 56 850 307 41 0 chr3 73483867 73484137 -154040441 + MLT1I LTR MaLR 57 337 -72 2183 104 4 0 chr3 73484257 73484565 -154040013 + AluSp SINE Alu 2 310 0 204 67 0 0 chr3 73484888 73484918 -154039660 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 191 167 95 0 chr3 73484921 73484963 -154039615 - L2 LINE L2 -13 3259 3214 * 685 222 76 0 chr3 73484930 73485101 -154039477 - MIR SINE MIR -20 242 59 417 270 101 7 chr3 73487051 73487199 -154037379 + MER46C DNA MER2_type 1 162 -176 216 289 24 60 chr3 73487262 73487345 -154037233 + MIR SINE MIR 42 121 -87 324 0 0 0 chr3 73487347 73487383 -154037195 + (TTTTG)n Simple_repeat Simple_repeat 2 37 0 386 253 155 46 chr3 73487552 73487746 -154036832 - MIR SINE MIR -2 260 46 248 282 203 25 chr3 73488173 73488336 -154036242 + MIR3 SINE MIR 2 193 -15 349 346 58 0 chr3 73488611 73488715 -154035863 + L2 LINE L2 3147 3256 -16 1867 109 19 4 chr3 73488728 73488993 -154035585 + AluSc SINE Alu 36 304 -5 556 192 177 38 chr3 73489381 73489643 -154034935 - MER31B LTR ERV1 -81 385 8 307 256 13 26 chr3 73489721 73489799 -154034779 - L2 LINE L2 -36 3236 3160 1859 92 4 0 chr3 73490226 73490475 -154034103 - MER47A DNA MER2_type -6 360 111 1022 116 0 3 chr3 73490475 73490717 -154033861 + AluSq SINE Alu 1 305 -8 678 131 8 74 chr3 73490717 73490839 -154033739 - MER47A DNA MER2_type -252 114 1 1348 254 73 3 chr3 73490879 73491206 -154033372 - LTR16C LTR ERVL 0 491 142 238 241 63 0 chr3 73491335 73491414 -154033164 + MER103 DNA DNA 81 164 -2 800 213 66 0 chr3 73491512 73491695 -154032883 - MER58A DNA MER1_type -8 216 22 1194 171 21 70 chr3 73491869 73491954 -154032624 + L1MA9 LINE L1 6041 6129 -183 2227 123 0 3 chr3 73491954 73492262 -154032316 + AluSx SINE Alu 1 307 -5 1194 171 21 70 chr3 73492262 73492462 -154032116 + L1MA9 LINE L1 6129 6312 0 232 270 124 22 chr3 73492603 73492692 -154031886 + L2 LINE L2 3182 3279 -34 1038 209 39 5 chr3 73492698 73492904 -154031674 - MER8 DNA MER2_type -1 238 26 283 291 7 106 chr3 73493213 73493272 -154031306 - L2 LINE L2 0 3272 3209 828 200 44 56 chr3 73493272 73493452 -154031126 - MER45A DNA AcHobo 0 178 1 283 291 7 106 chr3 73493452 73493543 -154031035 - L2 LINE L2 -63 3209 3137 497 212 26 18 chr3 73493848 73493961 -154030617 + LTR16C LTR ERVL 369 482 -9 1230 205 130 39 chr3 73493997 73494044 -154030534 + MLT1A1 LTR MaLR 5 46 -319 2289 87 0 7 chr3 73494044 73494342 -154030236 + AluSc SINE Alu 1 296 -13 1230 205 130 39 chr3 73494342 73494625 -154029953 + MLT1A1 LTR MaLR 46 365 0 567 276 61 0 chr3 73494824 73494987 -154029591 + LTR33 LTR ERVL 3 175 -346 1928 151 0 3 chr3 73495138 73495445 -154029133 - AluSx SINE Alu 0 306 1 457 307 14 0 chr3 73495918 73496058 -154028520 - LTR33 LTR ERVL -2 519 378 * 533 249 9 94 chr3 73496045 73496258 -154028320 + MLT1K LTR MaLR 371 565 -23 492 296 94 14 chr3 73496584 73496797 -154027781 - MIR SINE MIR -23 239 10 255 303 71 20 chr3 73497160 73497259 -154027319 + MIR SINE MIR 5 108 -154 886 191 0 6 chr3 73497587 73497760 -154026818 + MER53 DNA DNA 1 172 -17 955 221 33 15 chr3 73497897 73498168 -154026410 + L1MC5 LINE L1 7638 7913 -48 473 373 6 23 chr3 73498237 73498414 -154026164 + MIR3 SINE MIR 3 176 -32 180 0 0 0 chr3 73498975 73498995 -154025583 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 371 202 55 46 chr3 73499037 73499146 -154025432 - HAL1b LINE L1 -13 1335 1226 758 197 24 56 chr3 73499162 73499375 -154025203 + L1MC4 LINE L1 6803 7008 -1034 791 82 10 0 chr3 73499400 73499498 -154025080 + AluS SINE Alu 2 100 -212 21 36 0 0 chr3 73499639 73499667 -154024911 + AT_rich Low_complexity Low_complexity 1 28 0 899 261 35 21 chr3 73499825 73500155 -154024423 + L1ME LINE L1 5128 5467 -703 231 257 40 40 chr3 73500385 73500459 -154024119 - MIR3 SINE MIR -134 74 1 687 291 84 0 chr3 73500844 73501047 -154023531 - MIR SINE MIR -8 254 35 2432 87 0 0 chr3 73501261 73501570 -154023008 + AluSq SINE Alu 3 311 -2 616 266 75 48 chr3 73501696 73501936 -154022642 + MIR SINE MIR 3 251 -11 183 287 230 0 chr3 73502977 73503064 -154021514 + MIR SINE MIR 78 184 -78 204 40 0 0 chr3 73503105 73503130 -154021448 + (TTTTC)n Simple_repeat Simple_repeat 4 28 0 2042 91 0 28 chr3 73503130 73503417 -154021161 - AluY SINE Alu -32 279 1 229 237 158 0 chr3 73503725 73503801 -154020777 - L2 LINE L2 -4 3309 3222 191 226 19 0 chr3 73503876 73503929 -154020649 + L3 LINE CR1 1523 1576 -1 980 241 9 5 chr3 73504399 73504623 -154019955 - MER58B DNA MER1_type 0 341 117 3567 162 3 35 chr3 73504730 73504941 -154019637 - L1MA9 LINE L1 -408 5904 5688 1584 170 64 7 chr3 73504941 73505224 -154019354 + AluJb SINE Alu 2 300 -12 3567 162 3 35 chr3 73505224 73505451 -154019127 - L1MA9 LINE L1 -624 5688 5455 1798 165 42 0 chr3 73505451 73505736 -154018842 - AluJb SINE Alu -15 297 1 3567 162 3 35 chr3 73505736 73506204 -154018374 - L1MA9 LINE L1 -857 5455 5026 634 284 64 5 chr3 73506480 73506684 -154017894 - MIR SINE MIR -31 231 16 564 325 71 24 chr3 73506768 73507107 -154017471 + L2 LINE L2 2383 2737 -577 234 167 182 0 chr3 73507135 73507201 -154017377 - MIR SINE MIR -21 241 164 25 0 0 0 chr3 73507286 73507311 -154017267 + AT_rich Low_complexity Low_complexity 1 25 0 180 152 0 0 chr3 73507622 73507655 -154016923 + CT-rich Low_complexity Low_complexity 2 34 0 523 310 68 15 chr3 73508332 73508531 -154016047 + MIR SINE MIR 51 260 -2 218 330 11 23 chr3 73508563 73508651 -154015927 + L2 LINE L2 3227 3313 0 697 263 59 34 chr3 73508709 73508945 -154015633 - MIR SINE MIR 0 262 21 2082 105 31 3 chr3 73509007 73509293 -154015285 - AluSx SINE Alu -18 294 1 222 139 116 0 chr3 73509640 73509683 -154014895 - L2 LINE L2 -5 3267 3220 649 314 106 8 chr3 73509752 73510007 -154014571 + LTR16A1 LTR ERVL 178 457 0 2292 174 73 29 chr3 73510772 73511250 -154013328 + MLT1D LTR MaLR 7 505 0 203 320 140 13 chr3 73511252 73511402 -154013176 + L2 LINE L2 2145 2313 -1001 403 89 0 0 chr3 73512052 73512108 -154012470 + MADE1 DNA Mariner 1 56 -24 187 395 16 21 chr3 73512133 73512323 -154012255 + L2 LINE L2 2837 3025 -247 315 333 8 8 chr3 73512567 73512690 -154011888 - LTR16B LTR ERVL -280 184 62 1424 255 83 38 chr3 73513358 73513828 -154010750 + LTR16C LTR ERVL 1 491 0 214 236 149 12 chr3 73513893 73514025 -154010553 - MIR SINE MIR -96 166 7 203 279 192 10 chr3 73514069 73514173 -154010405 + MIR SINE MIR 84 206 -56 2201 112 0 0 chr3 73514186 73514507 -154010071 + AluSx SINE Alu 1 321 0 1966 236 62 36 chr3 73515075 73515925 -154008653 - L1ME LINE L1 -2786 3294 2423 311 280 100 82 chr3 73515933 73516322 -154008256 - MLT1H LTR MaLR -55 494 99 863 226 46 31 chr3 73516361 73516684 -154007894 - L1ME LINE L1 -3643 2437 2110 3560 132 9 0 chr3 73516704 73517263 -154007315 - L1PA16 LINE L1 -11 6155 5592 196 264 19 0 chr3 73517313 73517366 -154007212 + MIR SINE MIR 196 249 -13 37023 78 7 8 chr3 73517553 73522438 -154002140 - L1PA6 LINE L1 -4 6150 1273 2394 73 0 3 chr3 73522438 73522740 -154001838 - AluY SINE Alu -10 301 1 37023 78 7 8 chr3 73522740 73524002 -154000576 - L1PA6 LINE L1 -4881 1273 11 3258 161 55 50 chr3 73524042 73524954 -153999624 - L1MB3 LINE L1 -2 6181 5171 2655 248 68 63 chr3 73524967 73527075 -153997503 - L1ME LINE L1 -3984 2096 3 21 0 0 0 chr3 73527655 73527676 -153996902 + AT_rich Low_complexity Low_complexity 1 21 0 290 65 0 22 chr3 73527860 73527906 -153996672 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 1177 54 0 0 chr3 73527906 73528055 -153996523 - L1PA3 LINE L1 -24 6131 5983 330 302 10 26 chr3 73528082 73528213 -153996365 + MIR SINE MIR 15 141 -67 2178 172 8 4 chr3 73528348 73528806 -153995772 + MER89 LTR ERV1 1 559 0 1003 130 86 19 chr3 73528890 73529052 -153995526 - AluSg/x SINE Alu -27 285 113 322 309 52 22 chr3 73529169 73529305 -153995273 + MIR SINE MIR 117 256 -6 455 339 89 0 chr3 73530109 73530277 -153994301 + MER91A DNA MER1_type 1 183 -13 371 290 31 62 chr3 73531080 73531242 -153993336 + MIR SINE MIR 94 250 -12 369 274 92 75 chr3 73531711 73531992 -153992586 + LTR16A1 LTR ERVL 7 292 -165 2222 131 8 3 chr3 73532037 73532388 -153992190 + THE1B LTR MaLR 12 364 0 429 245 9 0 chr3 73532394 73532500 -153992078 + LTR16A1 LTR ERVL 351 457 0 213 254 51 0 chr3 73532689 73532748 -153991830 - MIR SINE MIR -97 165 104 261 277 84 0 chr3 73533536 73533619 -153990959 - MIR SINE MIR -56 206 117 759 216 55 35 chr3 73533626 73533825 -153990753 - MER3 DNA MER1_type 0 209 7 1780 200 33 59 chr3 73533938 73534449 -153990129 - MLT1D LTR MaLR -7 498 1 286 206 16 32 chr3 73534928 73534991 -153989587 + MIR SINE MIR 1 62 -200 220 299 52 41 chr3 73536246 73536343 -153988235 + MIR SINE MIR 19 116 -92 533 152 89 76 chr3 73536420 73536578 -153988000 - MER103 DNA DNA -3 163 4 198 281 193 0 chr3 73536649 73536706 -153987872 + L2 LINE L2 3156 3223 -49 1008 204 120 23 chr3 73536715 73537024 -153987554 + MER58B DNA MER1_type 2 340 -1 231 248 38 76 chr3 73537531 73537636 -153986942 + MIR SINE MIR 23 123 -139 10517 136 11 1 chr3 73537649 73540171 -153984407 + L1PA11 LINE L1 3644 6169 -5 207 0 0 0 chr3 73540201 73540224 -153984354 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 26 0 0 0 chr3 73540564 73540590 -153983988 + AT_rich Low_complexity Low_complexity 1 26 0 1216 193 34 28 chr3 73540903 73541225 -153983353 - MER33 DNA MER1_type 0 324 1 304 293 104 9 chr3 73541371 73541477 -153983101 - MIR SINE MIR -66 142 27 237 294 68 25 chr3 73542069 73542304 -153982274 + L1ME4a LINE L1 5873 6117 -4 2388 86 3 0 chr3 73542848 73543152 -153981426 + AluSp SINE Alu 2 306 -7 1116 161 54 5 chr3 73543212 73543417 -153981161 + MER20 DNA MER1_type 1 215 -4 560 276 124 47 chr3 73543668 73544070 -153980508 - LTR16A LTR ERVL -6 444 12 23 0 0 0 chr3 73544792 73544815 -153979763 + AT_rich Low_complexity Low_complexity 1 23 0 294 294 71 0 chr3 73545561 73545646 -153978932 + L3 LINE CR1 1415 1505 -72 3804 122 21 13 chr3 73545708 73546340 -153978238 + L1MA4A LINE L1 5635 6271 -32 269 237 103 96 chr3 73546634 73546790 -153977788 - MLT1H LTR MaLR -1 548 392 200 189 0 0 chr3 73547396 73547433 -153977145 + (CA)n Simple_repeat Simple_repeat 1 37 0 5064 177 4 2 chr3 73547459 73549103 -153975475 + L1P5 LINE L1 4167 5814 -337 338 272 54 43 chr3 73549347 73549581 -153974997 + L1MEd LINE L1 924 1257 -1233 40559 36 21 1 chr3 73549978 73556030 -153968548 + L1PA3 LINE L1 3 6179 0 31 0 0 0 chr3 73556054 73556085 -153968493 + AT_rich Low_complexity Low_complexity 1 31 0 441 266 44 44 chr3 73556171 73556400 -153968178 - L1MC4a LINE L1 -1983 5825 5597 21 0 0 0 chr3 73556505 73556526 -153968052 + AT_rich Low_complexity Low_complexity 1 21 0 1237 235 132 27 chr3 73556548 73556987 -153967591 + MLT1D LTR MaLR 21 505 0 267 238 0 105 chr3 73557692 73557797 -153966781 - MIR SINE MIR -79 183 90 21 0 0 0 chr3 73558062 73558083 -153966495 + AT_rich Low_complexity Low_complexity 1 21 0 421 229 114 38 chr3 73558502 73558633 -153965945 - L2 LINE L2 0 3313 3173 798 237 15 85 chr3 73559224 73559566 -153965012 + L1MD2 LINE L1 6038 6355 -4 679 269 93 9 chr3 73559770 73559986 -153964592 - MIR SINE MIR 0 262 29 21 0 0 0 chr3 73560133 73560154 -153964424 + AT_rich Low_complexity Low_complexity 1 21 0 637 295 45 20 chr3 73560620 73560864 -153963714 + MIR SINE MIR 11 260 -2 2869 135 13 8 chr3 73560965 73561439 -153963139 + L1MB3 LINE L1 5700 6175 -8 278 264 14 0 chr3 73561441 73561513 -153963065 + MIR SINE MIR 180 252 -10 6031 57 1 0 chr3 73561535 73562289 -153962289 + L1PA7 LINE L1 5397 6151 -3 273 222 0 0 chr3 73562294 73562357 -153962221 + (TA)n Simple_repeat Simple_repeat 1 63 0 270 281 21 115 chr3 73562669 73562861 -153961717 + MIR SINE MIR 79 252 -10 323 320 20 70 chr3 73563134 73563334 -153961244 - MIR SINE MIR -39 223 34 1217 254 64 30 chr3 73563525 73563776 -153960802 + MLT1H1 LTR MaLR 1 242 -313 2412 118 22 3 chr3 73563776 73564133 -153960445 - THE1B LTR MaLR 0 364 1 1217 254 64 30 chr3 73564133 73564415 -153960163 + MLT1H1 LTR MaLR 242 551 -4 641 213 97 43 chr3 73564423 73564681 -153959897 + MER102b DNA MER1_type 42 313 -28 2037 142 71 8 chr3 73565073 73565440 -153959138 + MLT1B LTR MaLR 1 390 0 1860 175 13 7 chr3 73565817 73566126 -153958452 - AluSx SINE Alu -1 311 1 2079 108 11 3 chr3 73567138 73567424 -153957154 + AluSx SINE Alu 1 288 -24 423 267 10 0 chr3 73568131 73568232 -153956346 + MIR3 SINE MIR 82 183 -25 309 238 24 36 chr3 73568506 73568590 -153955988 + MIR SINE MIR 161 243 -19 2355 84 0 0 chr3 73568624 73568920 -153955658 - AluY SINE Alu -15 296 1 271 385 81 0 chr3 73569879 73570027 -153954551 - L2 LINE L2 -13 3259 3100 268 261 170 18 chr3 73570122 73570287 -153954291 + L2 LINE L2 3105 3294 -19 549 232 36 72 chr3 73571916 73572110 -153952468 - L2 LINE L2 -1 3312 3126 370 253 77 48 chr3 73572226 73572457 -153952121 - L1ME1 LINE L1 -201 5963 5726 1131 316 49 19 chr3 73572480 73573008 -153951570 - L2 LINE L2 -265 3048 2494 215 350 77 33 chr3 73573051 73573234 -153951344 + MIR SINE MIR 57 247 -15 393 75 0 0 chr3 73573242 73573295 -153951283 + (ATG)n Simple_repeat Simple_repeat 1 53 0 331 258 11 21 chr3 73573358 73573451 -153951127 - L1MC4 LINE L1 -1339 6703 6612 294 165 24 12 chr3 73573451 73573536 -153951042 + (TA)n Simple_repeat Simple_repeat 1 86 0 417 305 67 49 chr3 73574457 73574680 -153949898 + MIR SINE MIR 36 262 0 847 291 52 16 chr3 73575457 73575708 -153948870 + MIR SINE MIR 3 262 0 583 295 26 21 chr3 73575706 73575899 -153948679 - MIR SINE MIR -56 206 13 * 1630 158 39 42 chr3 73575987 73576305 -153948273 - AluJo SINE Alu 0 317 1 1264 113 0 41 chr3 73576487 73576669 -153947909 - AluSx SINE Alu -4 308 133 2197 121 0 0 chr3 73576669 73576974 -153947604 - AluSx SINE Alu -7 305 1 1264 113 0 41 chr3 73576974 73576985 -153947593 - AluSx SINE Alu -179 133 123 319 225 282 26 chr3 73576994 73577221 -153947357 + MLT1H LTR MaLR 249 533 -16 939 128 0 0 chr3 73577536 73577661 -153946917 - AluSx SINE Alu -188 125 1 22 35 0 0 chr3 73578220 73578249 -153946329 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr3 73578629 73578649 -153945929 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 197 143 0 0 chr3 73578696 73578731 -153945847 + MIR SINE MIR 228 262 0 360 340 49 19 chr3 73578747 73578909 -153945669 - MIR SINE MIR -76 186 20 374 299 66 29 chr3 73579091 73579228 -153945350 + MIR3 SINE MIR 13 154 -54 2220 139 19 3 chr3 73579460 73579833 -153944745 + L1MC1 LINE L1 5938 6316 -17 1686 206 30 0 chr3 73580434 73580768 -153943810 + AluJb SINE Alu 3 345 0 2731 204 49 75 chr3 73580895 73581377 -153943201 + MER63C DNA MER1_type 1 447 -613 3228 33 10 3 chr3 73581377 73581768 -153942810 - L1PA3 LINE L1 -1 6154 5761 2731 204 49 75 chr3 73581768 73582240 -153942338 + MER63C DNA MER1_type 447 930 0 271 279 110 66 chr3 73582240 73582376 -153942202 + L3 LINE CR1 1435 1576 -1 234 298 35 74 chr3 73583344 73583404 -153941174 + MIR SINE MIR 19 80 -182 1197 224 13 4 chr3 73583404 73583641 -153940937 + MER8 DNA MER2_type 1 239 0 234 298 35 74 chr3 73583641 73583763 -153940815 + MIR SINE MIR 80 192 -70 316 311 28 0 chr3 73584039 73584145 -153940433 - MIR SINE MIR -108 154 46 323 235 130 9 chr3 73584213 73584328 -153940250 + MER103 DNA DNA 38 166 0 357 248 43 0 chr3 73585282 73585399 -153939179 - MER117 DNA MER1_type -74 123 2 745 172 8 22 chr3 73586646 73586780 -153937798 - FLAM_A SINE Alu -1 132 1 9395 36 0 0 chr3 73587040 73588944 -153935634 - L1PA3 LINE L1 0 6155 4252 290 346 0 0 chr3 73589084 73589165 -153935413 - L2 LINE L2 -7 3306 3226 190 313 223 0 chr3 73589314 73589426 -153935152 - L2 LINE L2 -1 3312 3176 2453 76 0 22 chr3 73590267 73590584 -153933994 + AluY SINE Alu 1 310 -1 1511 169 4 4 chr3 73590643 73590880 -153933698 + AluJo SINE Alu 54 290 -22 248 238 111 40 chr3 73591612 73591738 -153932840 + L2 LINE L2 2949 3083 -189 234 176 0 0 chr3 73591949 73592000 -153932578 + GA-rich Low_complexity Low_complexity 1 51 0 393 314 66 7 chr3 73592005 73592142 -153932436 - MIR SINE MIR -10 252 108 624 223 115 90 chr3 73592337 73592660 -153931918 + MER46C DNA MER2_type 1 331 -7 755 298 33 8 chr3 73592667 73592909 -153931669 - MIR SINE MIR -2 260 13 2202 184 29 12 chr3 73592950 73593369 -153931209 + MSTB LTR MaLR 1 426 0 1074 190 148 11 chr3 73593838 73594127 -153930451 + AluJo SINE Alu 1 302 0 420 316 74 26 chr3 73594394 73594584 -153929994 - L2 LINE L2 -4 3309 3111 607 294 135 18 chr3 73594630 73594956 -153929622 - L2 LINE L2 -363 2951 2588 352 182 0 0 chr3 73594967 73595033 -153929545 - LTR16C LTR ERVL -11 480 415 1153 268 80 16 chr3 73595051 73595476 -153929102 - LTR16C LTR ERVL -39 452 1 223 313 188 0 chr3 73595805 73595917 -153928661 - L2 LINE L2 -6 3307 3175 7306 32 0 1 chr3 73596149 73597745 -153926833 - L1PA4 LINE L1 0 6155 4557 780 289 20 20 chr3 73597933 73598186 -153926392 - MIR SINE MIR -2 260 8 427 233 9 60 chr3 73599237 73599353 -153925225 - MER81 DNA DNA -2 112 3 2084 119 14 0 chr3 73599558 73599683 -153924895 + AluY SINE Alu 1 123 -188 369 0 0 0 chr3 73599683 73599724 -153924854 + (CA)n Simple_repeat Simple_repeat 2 42 0 2084 119 14 0 chr3 73599724 73599884 -153924694 + AluY SINE Alu 123 290 -21 255 31 0 0 chr3 73599887 73599919 -153924659 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 2137 120 3 7 chr3 73600732 73601024 -153923554 + AluSx SINE Alu 1 291 -21 2410 78 3 3 chr3 73601220 73601529 -153923049 - AluY SINE Alu -2 309 1 184 179 0 0 chr3 73602375 73602403 -153922175 + L2 LINE L2 3232 3259 -13 460 302 29 0 chr3 73602826 73602965 -153921613 - MIR SINE MIR -27 235 93 22 35 0 0 chr3 73603533 73603562 -153921016 + AT_rich Low_complexity Low_complexity 1 29 0 531 252 146 7 chr3 73604354 73604505 -153920073 - MIR SINE MIR -89 173 2 227 300 0 0 chr3 73604662 73604722 -153919856 + GA-rich Low_complexity Low_complexity 2 61 0 698 222 35 69 chr3 73604822 73605025 -153919553 - MIR SINE MIR -66 196 1 2162 147 6 18 chr3 73605174 73605515 -153919063 + MER1B DNA MER1_type 1 337 0 2379 98 0 0 chr3 73605686 73605992 -153918586 + AluSx SINE Alu 1 306 -6 359 225 54 18 chr3 73606259 73606370 -153918208 - MER117 DNA MER1_type -82 115 1 226 232 24 85 chr3 73606463 73606545 -153918033 - MER5A DNA MER1_type -77 112 36 611 255 38 6 chr3 73606569 73606726 -153917852 + MER5B DNA MER1_type 3 164 -14 459 312 153 3 chr3 73606943 73607225 -153917353 - LTR16C LTR ERVL -8 483 160 236 242 292 8 chr3 73607538 73607658 -153916920 + MER117 DNA MER1_type 7 160 -37 774 169 13 26 chr3 73607696 73607850 -153916728 - MER5B DNA MER1_type -24 154 3 291 277 60 54 chr3 73609420 73609604 -153914974 + L2 LINE L2 160 344 -2970 547 253 24 53 chr3 73609606 73609776 -153914802 + L2 LINE L2 1273 1437 -1877 681 279 75 17 chr3 73609791 73610031 -153914547 + L2 LINE L2 3048 3301 -12 1652 201 3 0 chr3 73610031 73610315 -153914263 + AluJo SINE Alu 1 285 -27 312 27 0 0 chr3 73610320 73610357 -153914221 + (CA)n Simple_repeat Simple_repeat 2 38 0 1078 283 109 10 chr3 73610392 73610805 -153913773 + L2 LINE L2 1455 1908 -1406 196 290 129 0 chr3 73610806 73610868 -153913710 - L2 LINE L2 -5 3308 3239 * 201 244 151 23 chr3 73610866 73610952 -153913626 + L2 LINE L2 1908 2004 -1310 2369 152 50 39 chr3 73610959 73611650 -153912928 + MER51A LTR ERV1 1 625 -9 790 281 289 7 chr3 73611681 73612097 -153912481 + L2 LINE L2 2018 2550 -764 924 300 71 28 chr3 73612322 73612715 -153911863 + L2 LINE L2 2531 2940 -374 1463 175 208 63 chr3 73612741 73613428 -153911150 - L1MCa LINE L1 -4219 2345 1559 1330 277 54 9 chr3 73613480 73613924 -153910654 - L1MCa LINE L1 -5549 496 33 240 257 89 0 chr3 73614281 73614382 -153910196 + MER103 DNA DNA 50 159 -7 292 265 91 91 chr3 73614460 73614716 -153909862 + MIR SINE MIR 21 262 0 250 311 220 8 chr3 73615879 73616001 -153908577 - MIR SINE MIR -62 146 19 189 0 0 0 chr3 73616628 73616649 -153907929 + (TAA)n Simple_repeat Simple_repeat 3 23 0 300 239 169 0 chr3 73616777 73616848 -153907730 - MIR SINE MIR -108 154 72 244 278 286 0 chr3 73617263 73617389 -153907189 - MIR SINE MIR -11 251 90 203 298 0 21 chr3 73617468 73617562 -153907016 + GA-rich Low_complexity Low_complexity 4 95 0 188 368 0 18 chr3 73617564 73617621 -153906957 - L2 LINE L2 -78 3194 3139 526 230 126 0 chr3 73617702 73617837 -153906741 + MIR SINE MIR 92 243 -19 237 325 130 16 chr3 73618002 73618125 -153906453 + L2 LINE L2 3133 3269 -3 257 390 8 8 chr3 73618901 73619019 -153905559 - MIR SINE MIR -137 125 8 360 88 0 0 chr3 73619028 73619085 -153905493 + (CA)n Simple_repeat Simple_repeat 1 57 0 246 302 207 0 chr3 73619241 73619357 -153905221 + L2 LINE L2 2618 2757 -557 827 256 13 42 chr3 73619701 73619876 -153904702 - LTR40a LTR ERVL -112 407 239 3782 116 4 6 chr3 73619876 73620403 -153904175 - MER1A DNA MER1_type 0 527 2 827 256 13 42 chr3 73620403 73620465 -153904113 - LTR40a LTR ERVL -280 239 177 470 311 93 26 chr3 73620494 73620828 -153903750 + L2 LINE L2 2769 3124 -148 458 70 127 0 chr3 73620844 73620915 -153903663 - MADE1 DNA Mariner 0 80 1 26 64 0 0 chr3 73621499 73621546 -153903032 + AT_rich Low_complexity Low_complexity 1 47 0 2009 228 61 16 chr3 73621582 73622077 -153902501 - LTR40a LTR ERVL -2 517 1 1126 278 16 26 chr3 73622207 73622588 -153901990 + LTR16C LTR ERVL 115 491 0 229 369 131 51 chr3 73622737 73623089 -153901489 + L2 LINE L2 2811 3190 -82 2483 71 0 0 chr3 73623112 73623409 -153901169 - AluY SINE Alu -12 299 3 643 209 52 39 chr3 73623488 73623641 -153900937 - MIR SINE MIR -71 191 37 2249 119 3 3 chr3 73623735 73624047 -153900531 + AluSq SINE Alu 1 312 -1 207 0 0 0 chr3 73624058 73624081 -153900497 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 195 162 0 0 chr3 73624074 73624111 -153900467 + A-rich Low_complexity Low_complexity 3 39 0 * 185 388 0 31 chr3 73624200 73624298 -153900280 + MIR SINE MIR 26 120 -142 832 191 21 26 chr3 73625384 73625578 -153899000 + MLT1D LTR MaLR 313 505 0 1092 306 70 14 chr3 73625660 73625976 -153898602 + L2 LINE L2 2703 3000 -313 495 78 0 111 chr3 73625976 73626026 -153898552 - MADE1 DNA Mariner 0 80 43 2071 120 14 7 chr3 73626026 73626318 -153898260 + AluSx SINE Alu 1 294 -18 495 78 0 111 chr3 73626318 73626357 -153898221 - MADE1 DNA Mariner -37 43 1 1092 306 70 14 chr3 73626357 73626603 -153897975 + L2 LINE L2 3000 3307 -6 1935 162 3 7 chr3 73627012 73627308 -153897270 - AluSx SINE Alu -17 295 1 2268 110 0 0 chr3 73627437 73627747 -153896831 + AluY SINE Alu 1 310 -1 551 242 61 0 chr3 73627761 73627893 -153896685 + FLAM_A SINE Alu 1 140 -2 46 0 0 0 chr3 73628060 73628106 -153896472 + AT_rich Low_complexity Low_complexity 1 46 0 356 232 136 13 chr3 73628172 73628327 -153896251 - Charlie8 DNA MER1_type -2152 265 92 1457 117 30 30 chr3 73628340 73628570 -153896008 + MER30 DNA MER1_type 1 230 0 424 273 160 0 chr3 73629274 73629530 -153895048 - L1ME LINE L1 -303 5818 5522 308 322 76 48 chr3 73630114 73630428 -153894150 + L3 LINE CR1 628 950 -627 472 308 166 8 chr3 73630598 73630845 -153893733 + L3 LINE CR1 906 1191 -386 2372 154 31 2 chr3 73630981 73631397 -153893181 - MSTA LTR MaLR 0 428 1 449 340 25 15 chr3 73631645 73631845 -153892733 + L2 LINE L2 2853 3054 -259 2123 89 9 61 chr3 73631887 73632244 -153892334 - AluSc SINE Alu 0 340 1 282 230 74 59 chr3 73632306 73632441 -153892137 + L2 LINE L2 3113 3249 -64 1738 120 38 15 chr3 73632491 73632776 -153891802 + AluSx SINE Alu 23 312 0 913 311 72 49 chr3 73632776 73632921 -153891657 + L2 LINE L2 2742 2882 -431 2416 83 0 6 chr3 73632921 73633234 -153891344 - AluY SINE Alu 0 311 1 913 311 72 49 chr3 73633234 73633647 -153890931 + L2 LINE L2 2882 3313 0 391 325 25 20 chr3 73633626 73633813 -153890765 - MIR SINE MIR -59 203 15 * 256 273 0 0 chr3 73633928 73633994 -153890584 + (CATA)n Simple_repeat Simple_repeat 3 68 0 388 324 91 23 chr3 73634344 73634520 -153890058 - MIR SINE MIR -71 191 4 465 269 207 0 chr3 73634583 73634728 -153889850 + MER5A DNA MER1_type 9 183 -6 180 0 0 0 chr3 73635257 73635277 -153889301 + (TTG)n Simple_repeat Simple_repeat 2 21 0 22 0 0 0 chr3 73636279 73636301 -153888277 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 73636827 73636850 -153887728 + AT_rich Low_complexity Low_complexity 1 23 0 660 231 39 26 chr3 73636885 73637041 -153887537 - MER91B DNA MER1_type -15 175 18 473 276 171 18 chr3 73637180 73637397 -153887181 - MIR SINE MIR 0 262 13 249 265 15 15 chr3 73637448 73637516 -153887062 - MER113 DNA MER1_type? 0 521 454 3005 153 37 19 chr3 73637604 73638128 -153886450 + L1MD1 LINE L1 5637 6175 -67 2561 62 0 0 chr3 73638128 73638435 -153886143 - AluY SINE Alu -4 307 1 3005 153 37 19 chr3 73638435 73638505 -153886073 + L1MD1 LINE L1 6175 6242 0 446 245 159 26 chr3 73638652 73638803 -153885775 + MIR SINE MIR 92 262 0 295 245 51 20 chr3 73639104 73639202 -153885376 + MIR SINE MIR 89 189 -73 317 205 26 13 chr3 73639805 73639883 -153884695 + MER5A DNA MER1_type 30 108 -81 459 0 0 0 chr3 73639927 73639978 -153884600 + (TG)n Simple_repeat Simple_repeat 2 52 0 2008 119 0 0 chr3 73639980 73640248 -153884330 - AluSx SINE Alu -31 281 14 225 159 0 0 chr3 73640350 73640394 -153884184 + (TA)n Simple_repeat Simple_repeat 2 45 0 1124 159 35 80 chr3 73640693 73640717 -153883861 - L1MC2 LINE L1 0 6344 6320 1966 145 16 10 chr3 73640717 73641027 -153883551 + AluJb SINE Alu 1 312 0 1124 159 35 80 chr3 73641027 73641341 -153883237 - L1MC2 LINE L1 -24 6320 6021 885 337 91 33 chr3 73641861 73642811 -153881767 - L2 LINE L2 -1 3271 2261 277 190 116 50 chr3 73642835 73642956 -153881622 - MER113 DNA MER1_type? -42 479 351 1173 87 0 0 chr3 73642978 73643128 -153881450 + AluY SINE Alu 151 300 -11 334 270 93 19 chr3 73643162 73643377 -153881201 - MER113 DNA MER1_type? -282 239 9 755 174 84 12 chr3 73644209 73644376 -153880202 + MER3 DNA MER1_type 1 179 -30 2073 156 0 0 chr3 73644453 73644760 -153879818 - AluSx SINE Alu -5 307 1 781 229 144 5 chr3 73644859 73645060 -153879518 - MIR SINE MIR -29 233 5 928 215 45 0 chr3 73645066 73645266 -153879312 - MER3 DNA MER1_type 0 209 1 347 328 35 0 chr3 73645336 73645452 -153879126 - L2 LINE L2 -19 3253 3134 752 270 46 7 chr3 73645472 73645757 -153878821 + L1MC4a LINE L1 4882 5177 -969 469 187 32 128 chr3 73645794 73645839 -153878739 + Charlie8 DNA MER1_type 38 86 -2331 1678 192 0 17 chr3 73645839 73646130 -153878448 + AluJb SINE Alu 1 286 -26 469 187 32 128 chr3 73646130 73646271 -153878307 + Charlie8 DNA MER1_type 86 206 -2211 204 190 172 0 chr3 73646468 73646526 -153878052 - L2 LINE L2 -231 3082 3015 2283 99 3 0 chr3 73648073 73648376 -153876202 + AluSx SINE Alu 1 304 -8 1862 178 0 10 chr3 73648541 73648844 -153875734 + AluJb SINE Alu 5 304 -8 26 64 0 0 chr3 73649029 73649076 -153875502 + AT_rich Low_complexity Low_complexity 1 47 0 2370 86 3 10 chr3 73649258 73649559 -153875019 - AluSp SINE Alu -14 299 1 2248 124 7 0 chr3 73650538 73650844 -153873734 + AluSx SINE Alu 1 308 -4 208 147 0 0 chr3 73651422 73651456 -153873122 + (TAGA)n Simple_repeat Simple_repeat 4 37 0 21 36 0 0 chr3 73652097 73652125 -153872453 + AT_rich Low_complexity Low_complexity 1 28 0 183 42 0 0 chr3 73653363 73653387 -153871191 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 183 129 0 0 chr3 73653888 73653919 -153870659 + (GAAAA)n Simple_repeat Simple_repeat 4 34 0 1917 171 3 0 chr3 73655074 73655361 -153869217 + AluSx SINE Alu 6 293 -19 407 126 0 103 chr3 73655390 73655477 -153869101 - MADE1 DNA Mariner -2 78 1 512 72 0 48 chr3 73656036 73656119 -153868459 + L1MB3 LINE L1 6090 6168 -15 24 0 0 0 chr3 73656127 73656151 -153868427 + AT_rich Low_complexity Low_complexity 1 24 0 297 246 15 0 chr3 73656168 73656233 -153868345 - L2 LINE L2 -21 3292 3227 1553 147 8 19 chr3 73656523 73656782 -153867796 + AluJb SINE Alu 54 309 -3 1016 258 106 20 chr3 73656875 73657367 -153867211 + L1MC4a LINE L1 5402 5935 -1873 27 0 0 0 chr3 73657560 73657587 -153866991 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr3 73657826 73657850 -153866728 + AT_rich Low_complexity Low_complexity 1 24 0 317 53 78 5 chr3 73658251 73658302 -153866276 + MSTD LTR MaLR 1 49 -379 1720 101 14 0 chr3 73658311 73658587 -153865991 + L1MA8 LINE L1 5328 5607 -693 2110 106 0 66 chr3 73658603 73658981 -153865597 + L1PB2 LINE L1 5737 6089 -62 1550 165 4 23 chr3 73658986 73659247 -153865331 - AluJb SINE Alu -56 256 1 2060 135 4 0 chr3 73659273 73659578 -153865000 - AluSx SINE Alu 0 306 1 1188 123 0 5 chr3 73659592 73659779 -153864799 + L1MA8 LINE L1 5595 5780 -520 2463 67 0 3 chr3 73659779 73660079 -153864499 + AluY SINE Alu 1 299 -12 210 216 0 0 chr3 73660080 73660117 -153864461 + (TG)n Simple_repeat Simple_repeat 2 38 0 2392 163 16 25 chr3 73660148 73660662 -153863916 + L1MA8 LINE L1 5782 6290 -1 1224 223 118 78 chr3 73660677 73661049 -153863529 + MSTD LTR MaLR 41 395 -1 232 107 89 18 chr3 73661050 73661106 -153863472 + MSTD-int LTR MaLR 1 60 -1591 441 79 79 0 chr3 73661106 73661182 -153863396 + LTR54 LTR ERV1 429 510 0 555 255 40 45 chr3 73661216 73661416 -153863162 + MER57-int LTR ERV1 1948 2146 -4185 359 243 19 19 chr3 73661407 73661510 -153863068 + MER57-int LTR ERV1 2092 2194 -4137 * 2215 104 0 10 chr3 73662572 73662871 -153861707 - AluSq SINE Alu -17 296 1 492 193 103 107 chr3 73663364 73663616 -153860962 + MER57-int LTR ERV1 3127 3326 -1610 2256 105 3 0 chr3 73663616 73663920 -153860658 + AluSx SINE Alu 1 305 -7 492 193 103 107 chr3 73663920 73663981 -153860597 + MER57-int LTR ERV1 3326 3386 -1550 4122 120 66 54 chr3 73663981 73664826 -153859752 + MER4D LTR ERV1 1 610 0 2009 205 72 42 chr3 73664830 73665268 -153859310 + MER57-int LTR ERV1 3387 3810 -1126 2109 119 3 3 chr3 73665268 73665561 -153859017 + AluSx SINE Alu 3 295 -17 2009 205 72 42 chr3 73665561 73666345 -153858233 + MER57-int LTR ERV1 3810 4411 -525 2046 151 0 0 chr3 73666357 73666661 -153857917 - AluSq SINE Alu -9 304 1 2129 123 10 7 chr3 73666737 73667047 -153857531 - AluSx SINE Alu -1 311 1 1724 216 45 13 chr3 73667160 73667535 -153857043 + MER57-int LTR ERV1 6752 7138 -399 2434 166 19 74 chr3 73667540 73668053 -153856525 + LTR54 LTR ERV1 1 485 -25 911 238 54 102 chr3 73668057 73668448 -153856130 + MST-int LTR MaLR 664 1035 -616 2259 129 0 0 chr3 73669029 73669340 -153855238 + AluSx SINE Alu 1 311 -1 236 273 83 8 chr3 73669639 73669760 -153854818 + MIR SINE MIR 129 258 -4 2496 63 0 0 chr3 73669788 73670087 -153854491 + AluY SINE Alu 1 299 -12 2787 13 0 0 chr3 73670888 73671192 -153853386 + AluYa5 SINE Alu 1 304 -7 321 280 145 45 chr3 73672110 73672310 -153852268 + L1MC/D LINE L1 5580 5799 -2009 2113 135 44 33 chr3 73672343 73672706 -153851872 + L1MA3 LINE L1 5932 6298 -7 472 294 114 48 chr3 73672787 73672885 -153851693 - MIR SINE MIR -1 261 171 2281 75 3 3 chr3 73672885 73673179 -153851399 - AluY SINE Alu -17 294 1 472 294 114 48 chr3 73673179 73673308 -153851270 - MIR SINE MIR -91 171 19 24 0 0 0 chr3 73673925 73673949 -153850629 + AT_rich Low_complexity Low_complexity 1 24 0 340 154 0 0 chr3 73674322 73674374 -153850204 - MER94 DNA DNA -80 54 3 358 233 35 0 chr3 73674377 73674463 -153850115 - MIR SINE MIR -46 216 128 246 293 67 0 chr3 73674930 73675005 -153849573 + MIR SINE MIR 65 144 -64 780 301 143 30 chr3 73675261 73675933 -153848645 + L2 LINE L2 2535 3303 -10 1058 158 5 31 chr3 73676132 73676328 -153848250 - AluJo SINE Alu -13 299 109 881 182 11 66 chr3 73676328 73676509 -153848069 - AluJo SINE Alu -140 172 2 357 312 36 22 chr3 73677211 73677349 -153847229 - MIR SINE MIR -7 255 116 238 316 71 52 chr3 73677421 73677690 -153846888 + L2 LINE L2 2346 2619 -695 470 179 136 43 chr3 73677709 73677849 -153846729 + MIR SINE MIR 9 161 -101 207 94 0 0 chr3 73677936 73677955 -153846623 + (TG)n Simple_repeat Simple_repeat 2 23 -10 1817 145 14 14 chr3 73677955 73678251 -153846327 - AluJb SINE Alu -15 297 2 207 94 0 0 chr3 73678251 73678263 -153846315 + (TG)n Simple_repeat Simple_repeat 22 33 0 357 312 36 22 chr3 73680009 73680147 -153844431 + MIR SINE MIR 116 255 -7 9160 46 0 1 chr3 73680729 73681848 -153842730 - L1P LINE L1 -774 5372 4255 185 143 0 20 chr3 73681957 73682006 -153842572 + (CGG)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr3 73682053 73682075 -153842503 + GC_rich Low_complexity Low_complexity 1 22 0 253 0 54 0 chr3 73682094 73682131 -153842447 + (CCG)n Simple_repeat Simple_repeat 3 41 0 26 0 0 0 chr3 73682161 73682187 -153842391 + GC_rich Low_complexity Low_complexity 1 26 0 27 62 0 0 chr3 73682203 73682251 -153842327 + GC_rich Low_complexity Low_complexity 1 48 0 2808 13 0 13 chr3 73683762 73684077 -153840501 + AluYa5 SINE Alu 1 311 0 1893 145 0 26 chr3 73684405 73684709 -153839869 - AluJo SINE Alu -16 296 1 902 183 6 6 chr3 73685480 73685649 -153838929 - AluJb SINE Alu 0 312 144 1791 94 20 104 chr3 73685731 73686030 -153838548 + AluSx SINE Alu 1 274 -38 260 53 26 0 chr3 73686034 73686072 -153838506 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 2124 125 6 3 chr3 73687567 73687878 -153836700 - AluSx SINE Alu 0 312 1 1339 199 117 10 chr3 73688183 73688490 -153836088 - MER58B DNA MER1_type 0 341 2 452 270 93 23 chr3 73689611 73689826 -153834752 + L1ME4a LINE L1 5626 5855 -266 34 96 0 0 chr3 73689940 73690044 -153834534 + AT_rich Low_complexity Low_complexity 1 104 0 347 181 170 19 chr3 73690412 73690549 -153834029 - MLT1H LTR MaLR -2 590 414 906 258 60 15 chr3 73690581 73690848 -153833730 - MLT1H LTR MaLR -228 321 43 419 272 76 6 chr3 73690928 73691086 -153833492 - MIR SINE MIR -28 234 66 1392 211 33 23 chr3 73691855 73692154 -153832424 - AluJo SINE Alu -10 302 1 1663 176 60 3 chr3 73692957 73693258 -153831320 - MLT1A1 LTR MaLR 0 365 48 181 0 33 33 chr3 73693258 73693288 -153831290 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 233 167 0 0 chr3 73693288 73693324 -153831254 - Alu SINE Alu -181 121 86 1436 162 0 9 chr3 73693324 73693546 -153831032 - AluJo SINE Alu -92 220 1 307 118 20 20 chr3 73693546 73693597 -153830981 - MLT1A1 LTR MaLR -314 51 1 486 196 120 8 chr3 73695381 73695514 -153829064 - L1ME4a LINE L1 0 6121 5974 1286 284 57 23 chr3 73696727 73697198 -153827380 - LTR33 LTR ERVL -16 505 19 1943 81 0 16 chr3 73697642 73697888 -153826690 - AluSx SINE Alu -12 300 59 2212 103 0 13 chr3 73697956 73698257 -153826321 + AluSg SINE Alu 1 297 -13 350 298 169 30 chr3 73698727 73699093 -153825485 + L2 LINE L2 2883 3299 -14 298 313 71 0 chr3 73699100 73699214 -153825364 + MIR SINE MIR 35 157 -63 277 265 61 42 chr3 73699211 73699393 -153825185 - MIR SINE MIR -1 261 15 * 2243 112 0 3 chr3 73699639 73699942 -153824636 - AluSg SINE Alu -8 302 1 343 253 44 0 chr3 73700355 73700446 -153824132 + MIR SINE MIR 85 179 -83 1854 150 7 7 chr3 73700537 73700830 -153823748 - AluSx SINE Alu -9 303 11 243 170 43 0 chr3 73701348 73701395 -153823183 + L2 LINE L2 3224 3272 0 1706 140 52 197 chr3 73702230 73702358 -153822220 + L1MC3 LINE L1 6707 6852 -933 444 51 0 0 chr3 73702358 73702417 -153822161 + (CA)n Simple_repeat Simple_repeat 1 59 0 1706 140 52 197 chr3 73702417 73702791 -153821787 + L1MC3 LINE L1 6852 7117 -668 1875 140 3 47 chr3 73702791 73703113 -153821465 - AluJo SINE Alu -4 308 1 1706 140 52 197 chr3 73703113 73703189 -153821389 + L1MC3 LINE L1 7117 7202 -583 * 5553 119 89 35 chr3 73703173 73703889 -153820689 + L1MA9 LINE L1 5044 5839 -473 1782 158 45 3 chr3 73703889 73704181 -153820397 + AluSx SINE Alu 1 304 -8 5553 119 89 35 chr3 73704181 73704683 -153819895 + L1MA9 LINE L1 5839 6312 0 878 227 0 0 chr3 73704687 73704859 -153819719 + L1MC3 LINE L1 7614 7785 0 1721 152 51 4 chr3 73705734 73706010 -153818568 - AluJb SINE Alu -6 306 18 663 213 35 0 chr3 73706407 73706548 -153818030 - L1MD2 LINE L1 -13 6346 6201 990 189 112 54 chr3 73706555 73706651 -153817927 - L1MD2 LINE L1 -217 6142 6053 2295 90 3 7 chr3 73706651 73706950 -153817628 + AluSc SINE Alu 1 298 -11 990 189 112 54 chr3 73706950 73707112 -153817466 - L1MD2 LINE L1 -306 6053 5869 31 76 0 0 chr3 73707112 73707178 -153817400 + AT_rich Low_complexity Low_complexity 1 66 0 256 235 0 0 chr3 73708173 73708224 -153816354 - L2 LINE L2 -12 3260 3210 180 329 0 0 chr3 73708747 73708817 -153815761 + MIR SINE MIR 180 249 -13 535 248 136 105 chr3 73708871 73709134 -153815444 - MLT1J2 LTR MaLR -10 440 186 2135 100 3 7 chr3 73709134 73709452 -153815126 - AluSx SINE Alu 0 312 12 535 248 136 105 chr3 73709452 73709477 -153815101 - MLT1J2 LTR MaLR -264 186 163 1961 133 0 20 chr3 73709477 73709777 -153814801 - AluJo SINE Alu -18 294 1 535 248 136 105 chr3 73709777 73709914 -153814664 - MLT1J2 LTR MaLR -287 163 1 363 356 107 0 chr3 73710103 73710280 -153814298 + MIR SINE MIR 67 262 0 333 0 0 0 chr3 73710529 73710566 -153814012 + (CA)n Simple_repeat Simple_repeat 1 37 0 390 21 0 0 chr3 73710622 73710669 -153813909 + (CA)n Simple_repeat Simple_repeat 1 47 0 324 319 72 14 chr3 73711220 73711358 -153813220 + MIR SINE MIR 117 262 0 586 306 45 8 chr3 73712245 73712490 -153812088 - MER102a DNA MER1_type -2 328 75 1644 184 10 10 chr3 73712681 73712974 -153811604 - AluJb SINE Alu -15 297 5 577 173 8 8 chr3 73713842 73713975 -153810603 + CT-rich Low_complexity Low_complexity 2 134 0 21 0 0 0 chr3 73714442 73714463 -153810115 + AT_rich Low_complexity Low_complexity 1 21 0 460 304 31 37 chr3 73714642 73714803 -153809775 + MIR SINE MIR 46 205 -57 2098 140 3 3 chr3 73717216 73717516 -153807062 - AluSx SINE Alu -11 301 2 1396 219 6 28 chr3 73717644 73717767 -153806811 + AluJo SINE Alu 1 125 -187 2253 76 0 13 chr3 73717767 73718071 -153806507 - AluY SINE Alu -11 300 1 1396 219 6 28 chr3 73718071 73718266 -153806312 + AluJo SINE Alu 125 312 0 259 356 37 0 chr3 73719007 73719142 -153805436 - MER102a DNA MER1_type -1 329 190 414 264 0 41 chr3 73719151 73719272 -153805306 - L2 LINE L2 0 3313 3198 2704 138 22 75 chr3 73719273 73719761 -153804817 - L1MA8 LINE L1 0 6291 5833 581 171 0 93 chr3 73719761 73719890 -153804688 - FLAM_C SINE Alu -15 118 2 2704 138 22 75 chr3 73719890 73719945 -153804633 - L1MA8 LINE L1 -458 5833 5777 1974 160 39 9 chr3 73719945 73720281 -153804297 + L1MB5 LINE L1 5792 6125 -59 1781 159 7 26 chr3 73720281 73720589 -153803989 + AluJb SINE Alu 1 302 -10 1974 160 39 9 chr3 73720589 73720634 -153803944 + L1MB5 LINE L1 6125 6167 -17 238 247 25 25 chr3 73720822 73720903 -153803675 - L2 LINE L2 -1252 2062 1982 258 32 0 0 chr3 73721210 73721241 -153803337 + (CAT)n Simple_repeat Simple_repeat 2 32 0 2364 68 27 3 chr3 73721267 73721563 -153803015 + AluY SINE Alu 1 303 -8 670 246 106 14 chr3 73721746 73721953 -153802625 - MIR SINE MIR -3 259 34 307 214 0 0 chr3 73722478 73722534 -153802044 - AluSq/x SINE Alu -196 107 52 608 246 0 37 chr3 73722867 73723054 -153801524 + G-rich Low_complexity Low_complexity 1 180 0 23 54 0 0 chr3 73723896 73723933 -153800645 + AT_rich Low_complexity Low_complexity 1 37 0 230 365 113 26 chr3 73725393 73725623 -153798955 + L2 LINE L2 2398 2647 -667 180 0 0 0 chr3 73727058 73727078 -153797500 + (CAAAG)n Simple_repeat Simple_repeat 1 20 0 2242 135 0 0 chr3 73727509 73727813 -153796765 - AluSx SINE Alu -8 304 1 29 0 0 0 chr3 73728464 73728493 -153796085 + AT_rich Low_complexity Low_complexity 1 29 0 2397 93 0 6 chr3 73728493 73728806 -153795772 - AluY SINE Alu 0 311 1 1076 65 58 0 chr3 73729169 73729307 -153795271 - L1PB2 LINE L1 -7 6144 5999 29 0 0 0 chr3 73729455 73729484 -153795094 + AT_rich Low_complexity Low_complexity 1 29 0 4874 106 32 0 chr3 73729484 73730222 -153794356 - L1PB2 LINE L1 -165 5986 5226 21 0 0 0 chr3 73730273 73730294 -153794284 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr3 73731244 73731266 -153793312 + (TG)n Simple_repeat Simple_repeat 1 22 0 1991 169 63 39 chr3 73731549 73731729 -153792849 + MSTB LTR MaLR 3 177 -249 2399 28 41 14 chr3 73731729 73732020 -153792558 + AluY SINE Alu 1 299 -12 1991 169 63 39 chr3 73732020 73732253 -153792325 + MSTB LTR MaLR 177 426 0 201 267 23 81 chr3 73732294 73732380 -153792198 - L2 LINE L2 -262 3010 2930 326 289 94 19 chr3 73732396 73732555 -153792023 + L3 LINE CR1 1214 1384 -193 231 232 0 14 chr3 73732646 73732715 -153791863 + (TA)n Simple_repeat Simple_repeat 1 68 0 541 287 120 0 chr3 73732715 73732882 -153791696 - MIR SINE MIR -72 190 4 569 285 15 0 chr3 73732903 73733033 -153791545 + L3 LINE CR1 1439 1570 -7 557 251 19 47 chr3 73735649 73735864 -153788714 + MER74B LTR ERVL 414 622 0 683 261 82 0 chr3 73736038 73736233 -153788345 - MIR SINE MIR -49 213 3 768 153 0 69 chr3 73737512 73737643 -153786935 + FLAM_A SINE Alu 1 122 -11 234 156 0 0 chr3 73737648 73737693 -153786885 + (CATA)n Simple_repeat Simple_repeat 2 46 0 328 241 35 35 chr3 73738018 73738134 -153786444 + MLT1F1 LTR MaLR 2 117 -450 3107 162 18 31 chr3 73738141 73738746 -153785832 + L1MC3 LINE L1 7189 7785 0 795 249 97 21 chr3 73739418 73739655 -153784923 - MIR SINE MIR -3 259 5 245 313 0 0 chr3 73739676 73739743 -153784835 + (TATG)n Simple_repeat Simple_repeat 2 68 0 28 29 0 0 chr3 73740299 73740334 -153784244 + AT_rich Low_complexity Low_complexity 1 35 0 213 154 0 0 chr3 73740756 73740795 -153783783 + (CA)n Simple_repeat Simple_repeat 2 40 0 281 370 58 11 chr3 73741307 73741496 -153783082 + L2 LINE L2 2545 2742 -572 522 311 123 5 chr3 73741772 73741984 -153782594 - MIR SINE MIR -24 238 2 291 362 48 64 chr3 73742667 73742818 -153781760 + MIR SINE MIR 4 153 -109 1593 203 57 14 chr3 73742818 73743168 -153781410 + MLT1A1 LTR MaLR 1 365 0 291 362 48 64 chr3 73743168 73743204 -153781374 + MIR SINE MIR 153 188 -74 249 57 0 0 chr3 73743232 73743267 -153781311 + (CA)n Simple_repeat Simple_repeat 2 36 0 515 257 35 35 chr3 73744256 73744427 -153780151 - MLT1F1 LTR MaLR -8 534 364 1773 212 48 0 chr3 73744775 73745133 -153779445 - MLT1F1 LTR MaLR -188 379 5 370 256 86 8 chr3 73746870 73746987 -153777591 - L1ME4a LINE L1 -29 6092 5967 436 216 39 33 chr3 73747072 73747225 -153777353 - L1ME4a LINE L1 -1 6120 5967 215 327 131 13 chr3 73747904 73748057 -153776521 + MIR SINE MIR 62 232 -30 221 287 59 59 chr3 73748634 73748770 -153775808 + MIR SINE MIR 51 186 -76 219 321 47 78 chr3 73750728 73750921 -153773657 + MIR SINE MIR 37 223 -39 240 287 7 91 chr3 73751239 73751382 -153773196 + MER5B DNA MER1_type 2 132 -46 318 247 72 93 chr3 73751624 73751822 -153772756 - L1MC4a LINE L1 -109 6012 5807 1918 207 21 40 chr3 73751822 73752243 -153772335 - MLT2D LTR ERVL -1 413 1 318 247 72 93 chr3 73752243 73752350 -153772228 - L1MC4a LINE L1 -314 5807 5699 2326 108 0 0 chr3 73752534 73752839 -153771739 - AluSq SINE Alu -8 305 1 2306 128 0 0 chr3 73753458 73753770 -153770808 - AluSx SINE Alu 0 312 1 1378 138 43 0 chr3 73753938 73754148 -153770430 - MER20 DNA MER1_type 0 219 1 208 319 43 32 chr3 73754945 73755039 -153769539 + L3b LINE CR1 1357 1451 -132 6764 211 38 20 chr3 73755613 73757146 -153767432 - L1 LINE L1 -2538 4250 2652 216 0 0 0 chr3 73757146 73757170 -153767408 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 6764 211 38 20 chr3 73757170 73757593 -153766985 - L1 LINE L1 -4136 2652 2238 2077 145 0 3 chr3 73757792 73758102 -153766476 - AluSg1 SINE Alu 0 309 1 319 208 31 62 chr3 73758268 73758364 -153766214 - MLT1J LTR MaLR -205 306 214 1221 202 19 0 chr3 73758593 73758806 -153765772 - U3 snRNA snRNA 0 217 1 335 342 104 29 chr3 73758806 73759122 -153765456 + L2 LINE L2 2638 2977 -337 268 336 77 21 chr3 73760447 73760590 -153763988 - L2 LINE L2 -10 3262 3112 325 350 64 14 chr3 73760818 73760958 -153763620 + L3 LINE CR1 1385 1531 -46 3487 164 54 43 chr3 73761044 73761806 -153762772 + L1MB4 LINE L1 5405 6174 -6 6358 105 40 2 chr3 73761885 73762818 -153761760 - L1MA2 LINE L1 0 6304 5337 378 252 16 8 chr3 73763383 73763506 -153761072 - LTR16C LTR ERVL 0 491 368 909 201 38 11 chr3 73764320 73764504 -153760074 + MER5A DNA MER1_type 1 189 0 1284 204 93 56 chr3 73764627 73765077 -153759501 - MLT1C LTR MaLR 0 467 1 192 125 0 0 chr3 73765580 73765612 -153758966 + (TGGGGG)n Simple_repeat Simple_repeat 6 37 0 272 185 309 0 chr3 73765736 73765817 -153758761 + MER91C DNA MER1_type 35 140 0 184 291 36 0 chr3 73767484 73767539 -153757039 + L2 LINE L2 3254 3310 -3 255 257 0 43 chr3 73767540 73767610 -153756968 - L2 LINE L2 -20 3293 3227 1618 184 9 19 chr3 73767794 73768109 -153756469 + AluJb SINE Alu 1 312 0 201 39 0 0 chr3 73768112 73768138 -153756440 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 261 326 102 0 chr3 73770371 73770469 -153754109 + L2 LINE L2 3200 3307 -6 205 314 12 23 chr3 73770640 73770726 -153753852 - L2 LINE L2 -5 3308 3224 613 251 83 80 chr3 73770968 73771306 -153753272 - MLT1I LTR MaLR 0 409 71 299 288 59 110 chr3 73772771 73773007 -153751571 - L2 LINE L2 -177 3095 2872 2562 70 3 0 chr3 73773932 73774244 -153750334 + AluSp SINE Alu 1 313 0 245 211 26 79 chr3 73774280 73774356 -153750222 + MLT1K LTR MaLR 177 248 -340 189 0 0 0 chr3 73774619 73774640 -153749938 + (TTA)n Simple_repeat Simple_repeat 2 22 0 243 268 103 31 chr3 73775314 73775411 -153749167 + MER5A DNA MER1_type 86 189 0 1717 154 93 43 chr3 73775709 73775852 -153748726 + LTR28 LTR ERV1 2 136 -884 2127 125 16 19 chr3 73775852 73776165 -153748413 - AluSx SINE Alu 0 312 1 1717 154 93 43 chr3 73776165 73776345 -153748233 + LTR28 LTR ERV1 136 341 -679 570 210 52 14 chr3 73776500 73776693 -153747885 + LTR27 LTR ERV1 328 501 0 305 279 8 66 chr3 73776747 73776869 -153747709 + MER5A DNA MER1_type 7 121 -68 2805 26 0 0 chr3 73777092 73777403 -153747175 - AluY SINE Alu 0 311 1 471 272 38 0 chr3 73777403 73777587 -153746991 - MIR SINE MIR -19 243 53 1309 157 50 110 chr3 73778070 73778370 -153746208 - AluJo SINE Alu -30 282 1 486 220 8 17 chr3 73778708 73778826 -153745752 + L2 LINE L2 3197 3313 0 952 141 126 63 chr3 73779132 73779174 -153745404 + MER20 DNA MER1_type 1 39 -180 4359 113 37 17 chr3 73779174 73779880 -153744698 - L1MB2 LINE L1 -2 6169 5450 952 141 126 63 chr3 73779880 73780043 -153744535 + MER20 DNA MER1_type 39 219 0 23 0 0 0 chr3 73780507 73780530 -153744048 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr3 73781380 73781404 -153743174 + AT_rich Low_complexity Low_complexity 1 24 0 291 287 100 20 chr3 73781743 73781893 -153742685 + MER117 DNA MER1_type 32 193 -4 198 0 0 0 chr3 73784790 73784812 -153739766 + (A)n Simple_repeat Simple_repeat 1 22 0 256 193 70 0 chr3 73786325 73786382 -153738196 + MER91A DNA MER1_type 2 62 -134 304 233 0 0 chr3 73787340 73787400 -153737178 + L1ME3 LINE L1 5555 5614 -556 334 214 83 0 chr3 73787408 73787492 -153737086 - L1ME LINE L1 -442 5720 5630 * 534 264 46 2 chr3 73787482 73787668 -153736910 + L1ME3 LINE L1 5601 5795 -367 * 2433 237 62 51 chr3 73787662 73788532 -153736046 + L1MC4 LINE L1 6792 7671 -371 3317 134 45 8 chr3 73788561 73789068 -153735510 + MER1A DNA MER1_type 2 527 -2 775 238 44 69 chr3 73789070 73789432 -153735146 + L1MC4 LINE L1 7690 8042 0 819 201 39 22 chr3 73789485 73789664 -153734914 + MER20 DNA MER1_type 38 219 0 1058 231 140 12 chr3 73789664 73789993 -153734585 + L1ME3 LINE L1 5789 6159 -3 2013 136 0 0 chr3 73790017 73790333 -153734245 + AluJb SINE Alu 1 316 0 329 340 108 21 chr3 73791276 73791757 -153732821 + L2 LINE L2 2769 3310 -3 208 282 89 0 chr3 73792136 73792260 -153732318 + MIR SINE MIR 69 203 -59 821 169 82 60 chr3 73792592 73792775 -153731803 + MER58A DNA MER1_type 1 187 -37 1254 163 75 21 chr3 73793881 73794120 -153730458 + AluJo SINE Alu 3 254 -58 991 217 66 9 chr3 73794323 73794535 -153730043 + MER58A DNA MER1_type 1 224 0 268 303 214 0 chr3 73794891 73795036 -153729542 + MER5A DNA MER1_type 12 187 -2 1298 149 23 5 chr3 73795131 73795346 -153729232 - MER20 DNA MER1_type 0 219 1 316 272 97 38 chr3 73796906 73797155 -153727423 - L2 LINE L2 -262 3051 2789 1053 53 15 0 chr3 73797171 73797303 -153727275 + AluY SINE Alu 173 306 -5 483 256 98 18 chr3 73797335 73797540 -153727038 + MIR SINE MIR 6 222 -40 911 234 108 20 chr3 73797929 73798224 -153726354 + L1ME3A LINE L1 5831 6151 -19 222 323 38 15 chr3 73798781 73798914 -153725664 + (TGGA)n Simple_repeat Simple_repeat 3 138 0 911 185 54 0 chr3 73798956 73799161 -153725417 + L1P LINE L1 5117 5332 -814 4000 211 72 15 chr3 73799170 73799993 -153724585 + L1PA13 LINE L1 1 870 -5917 901 280 42 14 chr3 73800017 73800306 -153724272 + L1PA13 LINE L1 962 1258 -5529 22161 167 15 15 chr3 73800309 73805706 -153718872 + L1PA13 LINE L1 1396 6811 -3 5586 122 9 6 chr3 73805700 73806546 -153718032 + L1PA16 LINE L1 5317 6165 -1 * 210 256 25 74 chr3 73806717 73806838 -153717740 - MIR SINE MIR -61 147 33 210 274 145 0 chr3 73806913 73806975 -153717603 - MER5A DNA MER1_type -109 80 10 810 191 73 55 chr3 73807825 73808045 -153716533 - MER96B DNA MER1_type? -186 231 8 408 279 88 20 chr3 73808673 73808820 -153715758 + MER5A DNA MER1_type 10 166 -23 350 275 58 14 chr3 73809397 73809535 -153715043 + L1ME LINE L1 5524 5667 -454 705 200 87 7 chr3 73809643 73809793 -153714785 + MER46A DNA MER2_type 1 162 -74 15160 135 30 4 chr3 73809795 73812142 -153712436 + Tigger1 DNA MER2_type 6 2414 -4 505 178 30 20 chr3 73812124 73812225 -153712353 + MER46A DNA MER2_type 135 236 0 * 275 187 0 132 chr3 73812859 73812892 -153711686 + MIR SINE MIR 67 103 -159 2284 113 0 0 chr3 73812892 73813194 -153711384 - AluSg SINE Alu -8 302 1 275 187 0 132 chr3 73813194 73813251 -153711327 + MIR SINE MIR 103 145 -117 742 241 13 46 chr3 73813283 73813520 -153711058 - L2 LINE L2 -3 3310 3082 349 304 51 19 chr3 73813741 73813899 -153710679 - MIR SINE MIR -19 243 81 2065 128 10 3 chr3 73814784 73815082 -153709496 + AluSg SINE Alu 1 300 -10 219 36 0 0 chr3 73815172 73815200 -153709378 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1187 129 18 76 chr3 73815241 73815465 -153709113 - MER20 DNA MER1_type -5 214 4 355 310 11 69 chr3 73815530 73815704 -153708874 + MIR SINE MIR 60 223 -39 311 217 209 0 chr3 73816341 73816456 -153708122 + MIR SINE MIR 12 150 -112 314 253 25 0 chr3 73816649 73816728 -153707850 - MIR SINE MIR -122 140 60 764 208 23 12 chr3 73817023 73817196 -153707382 + MER5B DNA MER1_type 4 178 0 386 297 92 7 chr3 73818289 73818560 -153706018 + L2 LINE L2 2851 3145 -168 614 166 230 0 chr3 73818629 73818768 -153705810 + LTR33 LTR ERVL 101 271 -250 318 191 48 0 chr3 73818773 73818836 -153705742 + LTR33 LTR ERVL 449 514 -7 435 245 10 0 chr3 73818842 73818940 -153705638 + L2 LINE L2 3174 3272 0 224 191 16 32 chr3 73820469 73820532 -153704046 - MIR SINE MIR -133 129 68 919 193 9 73 chr3 73820755 73820973 -153703605 - MER20 DNA MER1_type 0 219 16 345 125 0 0 chr3 73822013 73822069 -153702509 + (CA)n Simple_repeat Simple_repeat 1 56 0 386 272 20 27 chr3 73822641 73822788 -153701790 - MER5A DNA MER1_type 0 189 44 461 204 181 59 chr3 73823184 73823488 -153701090 + L1ME4a LINE L1 5734 6074 -47 1421 296 69 18 chr3 73824457 73825007 -153699571 + MLT1K LTR MaLR 10 587 -1 661 288 152 52 chr3 73825799 73826386 -153698192 + L2 LINE L2 2592 3233 -39 717 285 40 4 chr3 73826386 73826635 -153697943 - MIR SINE MIR 0 262 5 661 288 152 52 chr3 73826635 73826679 -153697899 + L2 LINE L2 3233 3271 -1 234 319 128 14 chr3 73827272 73827413 -153697165 + MIR SINE MIR 17 173 -89 982 256 32 4 chr3 73827538 73827788 -153696790 + MIR SINE MIR 6 262 0 2063 155 3 0 chr3 73828617 73828926 -153695652 - AluSx SINE Alu -2 310 1 492 293 8 84 chr3 73829085 73829324 -153695254 - MIR SINE MIR -30 232 12 417 200 0 0 chr3 73829420 73829505 -153695073 - MER3 DNA MER1_type 0 209 125 580 198 60 0 chr3 73829511 73829627 -153694951 + MER3 DNA MER1_type 85 207 -2 364 307 66 12 chr3 73829929 73830095 -153694483 - MER5A DNA MER1_type -8 181 7 329 231 0 51 chr3 73830436 73830514 -153694064 + Charlie8 DNA MER1_type 105 178 -2239 781 277 16 21 chr3 73830530 73830772 -153693806 + MIR SINE MIR 14 254 -8 287 222 0 0 chr3 73830793 73830847 -153693731 + Charlie8 DNA MER1_type 192 245 -2172 279 125 0 0 chr3 73830981 73831029 -153693549 - MER5C DNA MER1_type -5 319 272 39 38 0 0 chr3 73831359 73831412 -153693166 + AT_rich Low_complexity Low_complexity 1 53 0 1027 191 0 0 chr3 73831412 73831590 -153692988 - AluJo SINE Alu -10 302 125 363 134 47 24 chr3 73831590 73831717 -153692861 + (TA)n Simple_repeat Simple_repeat 2 131 0 876 113 0 16 chr3 73831718 73831842 -153692736 - AluJo SINE Alu -190 122 1 1061 173 53 14 chr3 73832119 73832327 -153692251 - MLT1A1 LTR MaLR -149 216 1 1004 247 66 11 chr3 73832403 73832690 -153691888 + LTR16A1 LTR ERVL 155 457 0 2322 75 3 3 chr3 73832778 73833073 -153691505 + AluY SINE Alu 1 295 -16 539 257 71 14 chr3 73834325 73834535 -153690043 - MIR SINE MIR -30 232 11 511 284 100 19 chr3 73834535 73834806 -153689772 + L2 LINE L2 2995 3287 -26 1706 224 20 6 chr3 73834887 73835244 -153689334 + MLT1A1 LTR MaLR 1 362 -3 492 293 114 51 chr3 73835475 73835826 -153688752 + MLT1K LTR MaLR 17 389 -199 189 0 0 0 chr3 73836286 73836307 -153688271 + (T)n Simple_repeat Simple_repeat 1 21 0 561 239 0 0 chr3 73836568 73836685 -153687893 + MIR SINE MIR 44 160 -102 209 333 0 0 chr3 73836827 73836890 -153687688 + CT-rich Low_complexity Low_complexity 1 63 0 659 297 46 17 chr3 73839184 73839423 -153685155 + MLT1K LTR MaLR 325 570 -18 407 285 47 35 chr3 73840040 73840212 -153684366 + Charlie8 DNA MER1_type 103 276 -2141 4763 170 33 34 chr3 73840319 73840574 -153684004 + L1MB7 LINE L1 4729 4983 -1201 2284 100 0 23 chr3 73840574 73840875 -153683703 + AluY SINE Alu 1 294 -17 4763 170 33 34 chr3 73840875 73841183 -153683395 + L1MB7 LINE L1 4983 5290 -894 2076 167 0 0 chr3 73841183 73841495 -153683083 + AluSx SINE Alu 1 312 0 4763 170 33 34 chr3 73841495 73842352 -153682226 + L1MB7 LINE L1 5290 6168 -16 666 269 128 37 chr3 73845699 73846203 -153678375 + L2 LINE L2 2695 3313 0 1127 246 95 42 chr3 73847143 73847260 -153677318 + MER113 DNA MER1_type? 66 175 -346 300 83 0 0 chr3 73847260 73847308 -153677270 + (CAAA)n Simple_repeat Simple_repeat 2 49 0 1127 246 95 42 chr3 73847308 73847621 -153676957 + MER113 DNA MER1_type? 175 519 -2 180 0 0 0 chr3 73848032 73848052 -153676526 + (A)n Simple_repeat Simple_repeat 1 20 0 1455 115 0 19 chr3 73850407 73850616 -153673962 + AluSx SINE Alu 1 205 -107 256 111 0 111 chr3 73850617 73850680 -153673898 + AluSx SINE Alu 246 301 0 1693 164 25 4 chr3 73851851 73852125 -153672453 - AluJo SINE Alu -32 280 1 468 0 0 0 chr3 73852280 73852332 -153672246 + (TG)n Simple_repeat Simple_repeat 2 53 0 606 174 221 0 chr3 73854081 73854230 -153670348 - MER5A DNA MER1_type 0 189 8 1565 108 27 0 chr3 73854588 73854811 -153669767 + MER30 DNA MER1_type 2 230 0 855 240 78 124 chr3 73855275 73855759 -153668819 + MLT1J LTR MaLR 1 462 -49 183 203 78 47 chr3 73855793 73855857 -153668721 + MER5B DNA MER1_type 1 66 -112 828 261 144 50 chr3 73856621 73856896 -153667682 + L2 LINE L2 2466 2714 -599 1451 184 0 53 chr3 73856896 73857224 -153667354 + AluJb SINE Alu 3 314 0 828 261 144 50 chr3 73857224 73857570 -153667008 + L2 LINE L2 2714 3159 -154 971 205 33 19 chr3 73857570 73857785 -153666793 + MER20 DNA MER1_type 1 218 -1 828 261 144 50 chr3 73857785 73857956 -153666622 + L2 LINE L2 3159 3313 0 499 276 25 18 chr3 73858743 73858906 -153665672 + MIR SINE MIR 28 191 -71 1704 177 105 3 chr3 73858997 73859330 -153665248 + MLT1B LTR MaLR 1 367 -23 1902 211 15 10 chr3 73859519 73859912 -153664666 + MER63 DNA MER1_type 658 1052 -8 326 321 21 21 chr3 73860548 73860688 -153663890 + MIR SINE MIR 52 191 -71 26 50 0 0 chr3 73862058 73862098 -153662480 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr3 73862157 73862178 -153662400 + AT_rich Low_complexity Low_complexity 1 21 0 265 300 118 0 chr3 73862267 73862377 -153662201 - MLT1L LTR MaLR -146 469 347 311 248 74 41 chr3 73862484 73862605 -153661973 - MLT1J LTR MaLR -378 133 9 4493 175 40 17 chr3 73863399 73863443 -153661135 - L1MB4 LINE L1 0 6180 6139 2499 78 13 3 chr3 73863443 73863750 -153660828 - AluSq SINE Alu -3 310 1 4493 175 40 17 chr3 73863750 73864610 -153659968 - L1MB4 LINE L1 -41 6139 5245 647 253 58 54 chr3 73864661 73864922 -153659656 - MLT1I LTR MaLR -147 262 1 2823 158 26 133 chr3 73864983 73865281 -153659297 + MER82 DNA MER2_type 5 183 -470 2169 107 4 0 chr3 73865281 73865693 -153658885 - AluSp SINE Alu 0 413 1 2823 158 26 133 chr3 73865693 73866117 -153658461 + MER82 DNA MER2_type 183 651 -2 226 329 59 0 chr3 73866134 73866219 -153658359 - MIR SINE MIR -172 90 1 1134 163 59 5 chr3 73866625 73866846 -153657732 - L1MB3 LINE L1 -9 6174 5942 2150 114 14 0 chr3 73866859 73867148 -153657430 - AluSx SINE Alu -19 293 1 180 0 0 0 chr3 73868820 73868840 -153655738 + (A)n Simple_repeat Simple_repeat 1 20 0 1978 129 10 13 chr3 73871196 73871499 -153653079 + AluSx SINE Alu 1 302 -10 219 36 0 0 chr3 73871589 73871617 -153652961 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1182 129 18 76 chr3 73871658 73871882 -153652696 - MER20 DNA MER1_type -5 214 4 412 315 30 59 chr3 73871947 73872150 -153652428 + MIR SINE MIR 60 256 -6 357 242 194 0 chr3 73872749 73872873 -153651705 + MIR SINE MIR 3 150 -112 338 266 28 5 chr3 73873066 73873172 -153651406 - MIR SINE MIR -67 141 34 822 208 23 12 chr3 73873440 73873613 -153650965 + MER5B DNA MER1_type 4 178 0 434 305 130 9 chr3 73874703 73875018 -153649560 + L2 LINE L2 2851 3203 -110 607 166 230 0 chr3 73875045 73875184 -153649394 + LTR33 LTR ERVL 101 271 -250 316 191 48 0 chr3 73875189 73875252 -153649326 + LTR33 LTR ERVL 449 514 -7 468 245 10 0 chr3 73875258 73875356 -153649222 + L2 LINE L2 3174 3272 0 249 285 151 22 chr3 73876795 73876974 -153647604 - MIR SINE MIR -26 236 35 908 193 9 73 chr3 73877171 73877389 -153647189 - MER20 DNA MER1_type 0 219 16 571 322 110 44 chr3 73878333 73878955 -153645623 - L2 LINE L2 -11 3302 2638 1182 211 19 0 chr3 73878955 73879168 -153645410 + U3 snRNA snRNA 1 217 0 2435 124 0 29 chr3 73879861 73880208 -153644370 - MER1B DNA MER1_type 0 337 1 488 287 36 49 chr3 73880893 73881295 -153643283 + L1MC4a LINE L1 5525 5920 -246 2224 110 0 7 chr3 73881417 73881717 -153642861 + AluSq SINE Alu 1 298 -15 327 291 61 47 chr3 73883746 73883894 -153640684 - MIR SINE MIR -93 169 20 1782 161 25 3 chr3 73884065 73884351 -153640227 - AluJo SINE Alu -20 292 1 468 0 0 0 chr3 73884506 73884558 -153640020 + (TG)n Simple_repeat Simple_repeat 2 53 0 661 174 221 0 chr3 73886307 73886456 -153638122 - MER5A DNA MER1_type 0 189 8 1651 94 40 14 chr3 73886814 73887037 -153637541 + MER30 DNA MER1_type 2 230 0 861 238 78 124 chr3 73887501 73887985 -153636593 + MLT1J LTR MaLR 1 462 -49 256 296 183 26 chr3 73888019 73888134 -153636444 - MER5A DNA MER1_type 0 189 57 970 262 141 51 chr3 73888847 73889122 -153635456 + L2 LINE L2 2466 2715 -598 1462 185 0 50 chr3 73889122 73889449 -153635129 + AluJb SINE Alu 3 314 0 970 262 141 51 chr3 73889449 73889795 -153634783 + L2 LINE L2 2715 3159 -154 1047 205 33 19 chr3 73889795 73890010 -153634568 + MER20 DNA MER1_type 1 218 -1 970 262 141 51 chr3 73890010 73890181 -153634397 + L2 LINE L2 3159 3313 0 548 276 25 18 chr3 73890968 73891131 -153633447 + MIR SINE MIR 28 191 -71 1712 177 105 3 chr3 73891222 73891555 -153633023 + MLT1B LTR MaLR 1 367 -23 1928 211 15 10 chr3 73891744 73892137 -153632441 + MER63 DNA MER1_type 659 1053 -8 363 321 21 21 chr3 73892786 73892926 -153631652 + MIR SINE MIR 52 191 -71 26 50 0 0 chr3 73894296 73894336 -153630242 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr3 73894395 73894416 -153630162 + AT_rich Low_complexity Low_complexity 1 21 0 267 300 118 0 chr3 73894505 73894615 -153629963 - MLT1L LTR MaLR -146 469 347 308 248 74 41 chr3 73894722 73894843 -153629735 - MLT1J LTR MaLR -378 133 9 4537 175 40 17 chr3 73895637 73895681 -153628897 - L1MB4 LINE L1 0 6180 6139 2472 81 13 3 chr3 73895681 73895988 -153628590 - AluSq SINE Alu -3 310 1 4537 175 40 17 chr3 73895988 73896848 -153627730 - L1MB4 LINE L1 -41 6139 5245 648 245 61 58 chr3 73896899 73897160 -153627418 - MLT1I LTR MaLR -147 262 1 1553 152 3 73 chr3 73897221 73897524 -153627054 + MER82 DNA MER2_type 5 286 -367 614 81 0 10 chr3 73897524 73897623 -153626955 + (TTTC)n Simple_repeat Simple_repeat 2 99 0 2131 129 3 3 chr3 73897625 73897936 -153626642 - AluSp SINE Alu -2 311 1 1538 218 55 6 chr3 73897936 73898248 -153626330 + MER82 DNA MER2_type 270 596 -57 671 152 9 27 chr3 73898248 73898360 -153626218 + MER82 DNA MER2_type 542 651 -2 193 360 47 12 chr3 73898377 73898463 -153626115 - MIR3 SINE MIR -117 91 3 1217 158 59 5 chr3 73898868 73899089 -153625489 - L1MB3 LINE L1 -9 6174 5942 2159 113 14 0 chr3 73899102 73899394 -153625184 - AluSx SINE Alu -16 296 1 188 220 143 22 chr3 73900570 73900636 -153623942 - L2 LINE L2 -314 2958 2877 1529 212 107 22 chr3 73900636 73900763 -153623815 + MSTD LTR MaLR 3 118 -278 1649 172 3 45 chr3 73900763 73901077 -153623501 + AluJb SINE Alu 1 301 -11 1529 212 107 22 chr3 73901077 73901312 -153623266 + MSTD LTR MaLR 118 396 0 188 220 143 22 chr3 73901312 73901336 -153623242 - L2 LINE L2 -395 2877 2857 200 292 0 0 chr3 73901449 73901514 -153623064 + A-rich Low_complexity Low_complexity 1 65 0 508 263 60 30 chr3 73901526 73901792 -153622786 + L1M4 LINE L1 2128 2401 -3745 269 268 78 7 chr3 73902042 73902184 -153622394 + L1M4 LINE L1 2455 2606 -3540 204 336 48 32 chr3 73902517 73902642 -153621936 + MIR3 SINE MIR 82 208 0 475 239 36 54 chr3 73902794 73902961 -153621617 - MIR SINE MIR -91 171 8 1286 174 40 69 chr3 73903040 73903344 -153621234 - AluJo SINE Alu -17 295 1 308 91 0 0 chr3 73903957 73904001 -153620577 - MADE1 DNA Mariner -36 44 1 218 216 0 39 chr3 73904034 73904085 -153620493 - L2 LINE L2 -20 3252 3204 1600 249 40 18 chr3 73904340 73904789 -153619789 - L1ME1 LINE L1 -5 6161 5703 361 333 75 11 chr3 73904826 73905000 -153619578 - MIR SINE MIR -65 197 13 203 222 22 0 chr3 73905216 73905261 -153619317 + L2 LINE L2 3268 3313 0 198 237 0 0 chr3 73905731 73905769 -153618809 + MIR SINE MIR 36 73 -135 286 340 112 5 chr3 73906718 73906906 -153617672 - MIR SINE MIR -6 256 49 940 232 28 0 chr3 73906945 73907126 -153617452 - MER5A DNA MER1_type -1 188 3 315 307 0 23 chr3 73907158 73907246 -153617332 + L2 LINE L2 2997 3082 -231 962 236 15 5 chr3 73907254 73907457 -153617121 + MER58A DNA MER1_type 19 223 -1 583 198 24 16 chr3 73907548 73907674 -153616904 + L2 LINE L2 3184 3310 -3 261 281 30 38 chr3 73908043 73908166 -153616412 + MIR SINE MIR 8 125 -83 325 293 79 29 chr3 73908216 73908356 -153616222 - L2 LINE L2 -5 3308 3162 181 349 101 0 chr3 73908691 73908800 -153615778 + L2 LINE L2 2977 3096 -217 216 0 0 0 chr3 73908826 73908850 -153615728 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 190 261 43 29 chr3 73908860 73908929 -153615649 + MIR SINE MIR 183 252 -10 457 279 64 20 chr3 73908939 73909143 -153615435 + L2 LINE L2 3101 3313 0 827 302 13 4 chr3 73910001 73910236 -153614342 + MIR SINE MIR 16 252 -10 220 311 167 8 chr3 73910255 73910387 -153614191 - MIR SINE MIR -109 153 1 522 301 57 47 chr3 73910797 73911093 -153613485 - L2 LINE L2 -10 3303 3005 355 272 71 65 chr3 73911820 73912004 -153612574 - MER20B DNA MER1_type -594 189 5 341 270 98 60 chr3 73912007 73912190 -153612388 + L1ME4a LINE L1 5792 5994 -127 2336 106 60 20 chr3 73912190 73912540 -153612038 + THE1B LTR MaLR 1 364 0 341 270 98 60 chr3 73912540 73912674 -153611904 + L1ME4a LINE L1 5994 6121 0 212 211 0 0 chr3 73912867 73912905 -153611673 + L2 LINE L2 3268 3305 -8 1028 154 44 11 chr3 73912996 73913178 -153611400 + MER20 DNA MER1_type 31 218 -1 1742 138 60 13 chr3 73913338 73913636 -153610942 + AluJo SINE Alu 1 312 0 556 301 89 51 chr3 73915284 73915600 -153608978 - MER102a DNA MER1_type 0 330 3 1967 121 11 2 chr3 73915663 73916055 -153608523 - L1PA13 LINE L1 -378 5777 5254 2678 107 16 0 chr3 73916058 73916432 -153608146 + L1PA13 LINE L1 5784 6163 0 2391 58 0 14 chr3 73916493 73916832 -153607746 + AluY SINE Alu 1 311 0 2488 171 58 10 chr3 73918529 73919013 -153605565 - L1MB7 LINE L1 -8 6176 5670 207 0 0 0 chr3 73919013 73919036 -153605542 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 946 135 14 14 chr3 73919036 73919184 -153605394 - AluJb SINE Alu -28 284 137 2278 99 0 3 chr3 73919184 73919478 -153605100 - AluSg SINE Alu -17 293 1 2486 75 0 7 chr3 73919487 73919792 -153604786 - AluY SINE Alu -8 303 1 6297 196 34 25 chr3 73919792 73921202 -153603376 - L1MB7 LINE L1 -517 5667 4234 294 29 0 0 chr3 73921202 73921237 -153603341 + (TG)n Simple_repeat Simple_repeat 2 36 0 6297 196 34 25 chr3 73921237 73921617 -153602961 - L1MB7 LINE L1 -1950 4234 3859 1563 126 4 41 chr3 73922297 73922543 -153602035 + AluSx SINE Alu 48 284 -28 209 57 29 0 chr3 73922569 73922604 -153601974 + (CAA)n Simple_repeat Simple_repeat 2 37 0 482 252 69 55 chr3 73922605 73922823 -153601755 - L2 LINE L2 -14 3299 3079 252 309 44 29 chr3 73922835 73922971 -153601607 - MIR SINE MIR -29 233 96 207 0 0 0 chr3 73923127 73923150 -153601428 + (CAA)n Simple_repeat Simple_repeat 2 24 0 269 333 18 0 chr3 73924737 73924848 -153599730 - MER5A DNA MER1_type -75 114 2 2125 122 3 0 chr3 73925476 73925764 -153598814 - AluJb SINE Alu -23 289 1 222 298 96 29 chr3 73927267 73927371 -153597207 - MIR SINE MIR -66 196 86 583 168 46 6 chr3 73927463 73927636 -153596942 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 508 164 50 6 chr3 73927655 73927814 -153596764 + (TCCA)n Simple_repeat Simple_repeat 4 169 0 554 169 39 13 chr3 73927832 73927986 -153596592 + (TCCA)n Simple_repeat Simple_repeat 4 161 0 264 148 74 0 chr3 73927997 73928078 -153596500 + (TCCA)n Simple_repeat Simple_repeat 4 90 0 267 103 0 0 chr3 73928095 73928134 -153596444 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 210 91 0 0 chr3 73928158 73928191 -153596387 + (CCAA)n Simple_repeat Simple_repeat 4 36 0 747 303 106 25 chr3 73928199 73928559 -153596019 - L2 LINE L2 -3 3310 2922 928 290 48 3 chr3 73929405 73929698 -153594880 - LTR16C LTR ERVL 0 491 186 193 339 0 0 chr3 73929838 73929897 -153594681 - L2 LINE L2 -5 3267 3209 651 200 38 117 chr3 73929999 73930264 -153594314 + L1MC4 LINE L1 7799 8042 0 199 328 0 30 chr3 73931190 73931257 -153593321 + MIR SINE MIR 2 66 -196 180 0 0 0 chr3 73931371 73931391 -153593187 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 2189 116 3 10 chr3 73931637 73931948 -153592630 - AluSq SINE Alu -4 309 1 181 237 0 0 chr3 73932113 73932151 -153592427 - MIR SINE MIR -68 140 103 488 264 63 19 chr3 73932278 73932437 -153592141 - MIR SINE MIR -10 252 87 813 311 68 37 chr3 73933493 73933968 -153590610 + L2 LINE L2 2549 3037 -235 23 33 0 0 chr3 73934153 73934183 -153590395 + AT_rich Low_complexity Low_complexity 1 30 0 948 108 0 0 chr3 73935902 73936031 -153588547 - L1PB4 LINE L1 -1 6155 6027 448 291 12 17 chr3 73936221 73936393 -153588185 + MER117 DNA MER1_type 22 192 -5 646 261 78 48 chr3 73937000 73937230 -153587348 + MIR SINE MIR 26 262 0 227 363 65 16 chr3 73937233 73937357 -153587221 - MIR3 SINE MIR -64 144 15 249 178 0 0 chr3 73937386 73937431 -153587147 + MER5A DNA MER1_type 31 75 -114 296 275 69 101 chr3 73937807 73937996 -153586582 - MIR3 SINE MIR -17 191 9 528 310 61 31 chr3 73938358 73938587 -153585991 + MIR SINE MIR 26 261 -1 426 39 0 0 chr3 73939987 73940039 -153584539 + (CA)n Simple_repeat Simple_repeat 1 52 0 282 148 37 0 chr3 73940519 73940573 -153584005 - L1M4 LINE L1 -3292 2854 2799 319 300 40 20 chr3 73940701 73940801 -153583777 - MIR SINE MIR -78 184 83 238 271 17 0 chr3 73941730 73941789 -153582789 + (CAA)n Simple_repeat Simple_repeat 2 61 0 321 293 65 24 chr3 73941789 73941912 -153582666 - MIR SINE MIR 0 262 135 370 265 76 23 chr3 73944696 73944828 -153579750 - MIR3 SINE MIR -37 171 33 373 264 0 0 chr3 73944936 73945027 -153579551 + MIR SINE MIR 47 137 -125 361 296 157 0 chr3 73945029 73945137 -153579441 - L2 LINE L2 0 3272 3148 242 235 98 0 chr3 73945930 73945994 -153578584 + MIR SINE MIR 74 144 -78 649 272 122 9 chr3 73946158 73946371 -153578207 + MIR SINE MIR 23 259 -3 449 262 71 8 chr3 73946709 73946835 -153577743 - L2 LINE L2 0 3272 3139 448 239 30 14 chr3 73948444 73948612 -153575966 - MLT1J2 LTR MaLR -19 426 266 352 218 179 26 chr3 73948660 73948816 -153575762 - MLT1J2 LTR MaLR -270 180 1 513 298 71 30 chr3 73949234 73949432 -153575146 + MIR SINE MIR 47 252 -10 359 306 21 27 chr3 73950302 73950469 -153574109 - MIR SINE MIR -48 214 50 249 33 0 0 chr3 73950508 73950538 -153574040 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 1990 255 173 22 chr3 73951047 73951469 -153573109 + L2 LINE L2 1997 2354 -959 1045 256 14 0 chr3 73951469 73951688 -153572890 + MER58A DNA MER1_type 3 224 0 1990 255 173 22 chr3 73951688 73952246 -153572332 + L2 LINE L2 2354 3129 -184 4138 198 57 5 chr3 73952250 73953271 -153571307 - L1MB7 LINE L1 -1 6183 5108 2743 197 115 30 chr3 73953293 73954384 -153570194 - L1M4 LINE L1 -4831 2024 942 1340 195 32 111 chr3 73954382 73954751 -153569827 - L1M4 LINE L1 -6509 350 11 * 460 209 0 0 chr3 73954811 73954902 -153569676 + L2 LINE L2 3223 3313 0 357 245 9 28 chr3 73955274 73955380 -153569198 + MIR SINE MIR 46 149 -113 2649 187 105 87 chr3 73955529 73956341 -153568237 - LTR1B LTR ERV1 0 826 1 2236 106 3 10 chr3 73956774 73957085 -153567493 + AluSc SINE Alu 1 309 0 342 255 248 19 chr3 73957238 73957399 -153567179 + MIR SINE MIR 55 252 -10 192 293 0 0 chr3 73957366 73957407 -153567171 + L2 LINE L2 3224 3264 -8 * 274 261 54 22 chr3 73958228 73958320 -153566258 - MIR SINE MIR -70 192 98 1623 143 40 53 chr3 73958401 73958702 -153565876 + AluJb SINE Alu 1 297 -15 834 207 37 32 chr3 73959235 73959423 -153565155 + MER5A DNA MER1_type 1 189 0 882 248 116 0 chr3 73959576 73959774 -153564804 - MER58A DNA MER1_type 0 224 4 290 291 63 16 chr3 73959787 73959914 -153564664 + Charlie8 DNA MER1_type 131 263 -2154 240 256 39 26 chr3 73959998 73960076 -153564502 + (CATG)n Simple_repeat Simple_repeat 2 80 0 309 336 34 13 chr3 73961515 73961664 -153562914 - MIR SINE MIR -109 153 2 956 230 33 5 chr3 73961808 73962021 -153562557 - MER20 DNA MER1_type 0 219 1 797 194 167 31 chr3 73962073 73962300 -153562278 + MIR SINE MIR 5 262 0 224 274 0 0 chr3 73962331 73962382 -153562196 - MIR3 SINE MIR -54 154 104 288 0 0 0 chr3 73963172 73963204 -153561374 + (TG)n Simple_repeat Simple_repeat 2 33 0 219 229 0 0 chr3 73963206 73963254 -153561324 + GA-rich Low_complexity Low_complexity 1 48 0 2127 133 10 0 chr3 73964533 73964835 -153559743 + AluSx SINE Alu 3 307 -5 840 189 15 80 chr3 73965094 73965295 -153559283 - MER5A DNA MER1_type 0 189 2 402 301 15 30 chr3 73965583 73965716 -153558862 - MIR3 SINE MIR -40 168 38 236 51 0 26 chr3 73967205 73967244 -153557334 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2300 132 119 10 chr3 73967619 73968005 -153556573 - MSTA LTR MaLR 0 428 1 226 261 125 23 chr3 73968339 73968427 -153556151 + L2 LINE L2 3184 3280 -33 1066 168 32 16 chr3 73968774 73968959 -153555619 - MER20 DNA MER1_type -2 217 30 249 273 73 45 chr3 73969023 73969133 -153555445 + MLT1K LTR MaLR 133 245 -343 434 211 291 13 chr3 73969413 73969650 -153554928 + L2 LINE L2 2944 3246 -67 183 42 0 0 chr3 73969685 73969709 -153554869 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 358 245 64 0 chr3 73970424 73970518 -153554060 - L2 LINE L2 -8 3305 3206 224 118 0 0 chr3 73970716 73970750 -153553828 + MIR SINE MIR 158 191 -71 346 256 29 73 chr3 73971259 73971340 -153553238 + MIR3 SINE MIR 77 151 -57 1026 222 42 5 chr3 73971340 73971552 -153553026 - MER58A DNA MER1_type 0 224 5 346 256 29 73 chr3 73971552 73971607 -153552971 + MIR3 SINE MIR 151 207 -1 705 343 20 8 chr3 73971689 73971943 -153552635 - MIR SINE MIR 0 262 6 230 275 44 55 chr3 73973187 73973278 -153551300 + L2 LINE L2 2977 3066 -206 428 259 152 7 chr3 73973368 73973552 -153551026 + MIR SINE MIR 18 228 -34 1264 278 65 34 chr3 73974220 73974716 -153549862 + MLT1J LTR MaLR 1 511 0 1768 187 71 8 chr3 73974742 73975095 -153549483 + MER58D DNA MER1_type 12 386 0 2258 156 19 19 chr3 73976336 73976701 -153547877 + MLT1A1 LTR MaLR 1 365 0 1540 237 42 78 chr3 73976805 73977107 -153547471 + L1ME3A LINE L1 5655 5931 -239 2327 96 0 13 chr3 73977107 73977421 -153547157 + AluY SINE Alu 1 310 -1 1540 237 42 78 chr3 73977421 73977646 -153546932 + L1ME3A LINE L1 5931 6163 -7 289 264 55 9 chr3 73977850 73977960 -153546618 - MIR SINE MIR -41 221 107 1134 223 168 57 chr3 73978079 73978532 -153546046 + MLT1D LTR MaLR 2 504 -1 369 261 42 17 chr3 73978627 73978746 -153545832 + MER103 DNA DNA 38 159 -7 275 218 0 0 chr3 73978931 73978986 -153545592 + MIR3 SINE MIR 147 201 -7 368 206 33 11 chr3 73979006 73979098 -153545480 - MER117 DNA MER1_type -47 150 57 23 33 0 0 chr3 73979831 73979861 -153544717 + AT_rich Low_complexity Low_complexity 1 30 0 548 300 167 31 chr3 73979909 73980573 -153544005 - L2 LINE L2 -2 3311 2551 767 202 29 12 chr3 73980589 73980762 -153543816 - L1ME2 LINE L1 0 6164 5989 953 290 100 27 chr3 73980782 73981333 -153543245 - L2 LINE L2 -769 2545 1955 567 290 68 6 chr3 73981344 73981520 -153543058 - MIR SINE MIR -55 207 21 241 219 85 37 chr3 73981551 73981633 -153542945 + MER103 DNA DNA 2 87 -79 245 220 20 0 chr3 73981875 73981925 -153542653 - MIR SINE MIR -119 143 93 419 312 7 19 chr3 73982712 73982866 -153541712 + MIR SINE MIR 34 185 -77 257 275 43 0 chr3 73982921 73982990 -153541588 + MER5A DNA MER1_type 45 116 -73 197 56 37 56 chr3 73983706 73983760 -153540818 + (CAAAA)n Simple_repeat Simple_repeat 4 56 0 230 303 121 61 chr3 73987028 73987325 -153537253 + L2 LINE L2 2958 3272 0 319 260 45 71 chr3 73987473 73987627 -153536951 + MIR SINE MIR 113 262 0 242 312 51 51 chr3 73987697 73987854 -153536724 - L2 LINE L2 -2 3311 3155 630 259 34 15 chr3 73987862 73988067 -153536511 + L1MC4a LINE L1 5667 5875 -1933 970 292 81 64 chr3 73988311 73988440 -153536138 + L1MEd LINE L1 521 646 -5988 1378 229 23 0 chr3 73988440 73988745 -153535833 + AluJo SINE Alu 1 312 0 970 292 81 64 chr3 73988745 73989320 -153535258 + L1MEd LINE L1 646 1237 -5397 823 277 71 20 chr3 73989498 73989835 -153534743 + L1MEd LINE L1 1447 1700 -4842 329 263 43 113 chr3 73990154 73990340 -153534238 - L2 LINE L2 -78 3194 3022 478 292 130 5 chr3 73990375 73990567 -153534011 + MIR SINE MIR 34 249 -13 335 265 34 43 chr3 73991255 73991372 -153533206 - L2 LINE L2 -8 3264 3149 589 239 68 0 chr3 73991498 73991674 -153532904 + MER117 DNA MER1_type 6 193 -4 250 122 0 0 chr3 73991677 73991718 -153532860 - MIR3 SINE MIR -47 161 121 219 203 0 0 chr3 73992580 73992639 -153531939 + GA-rich Low_complexity Low_complexity 2 60 0 2076 129 0 3 chr3 73992699 73993010 -153531568 + AluSg SINE Alu 1 310 0 240 216 0 0 chr3 73993159 73993210 -153531368 + MER113 DNA MER1_type? 9 59 -462 935 208 0 126 chr3 73993270 73993339 -153531239 + L1ME1 LINE L1 5759 5835 -331 2228 105 0 16 chr3 73993339 73993645 -153530933 + AluSq SINE Alu 1 301 -12 935 208 0 126 chr3 73993645 73993980 -153530598 + L1ME1 LINE L1 5835 6002 -164 566 275 157 8 chr3 73994235 73994471 -153530107 + MER113 DNA MER1_type? 251 521 0 284 333 151 0 chr3 73994483 73994576 -153530002 + L2 LINE L2 3160 3266 -6 240 269 269 15 chr3 73994667 73994801 -153529777 - L3 LINE CR1 -272 1305 1138 305 287 73 27 chr3 73994829 73994979 -153529599 + L1MC5 LINE L1 7645 7801 -160 1682 185 3 10 chr3 73995090 73995388 -153529190 - AluJo SINE Alu -16 296 1 2360 76 0 19 chr3 73995574 73995890 -153528688 - AluY SINE Alu -1 310 1 268 366 15 30 chr3 73996163 73996294 -153528284 - MER5A DNA MER1_type -12 166 38 201 121 0 0 chr3 73996718 73996751 -153527827 + (TC)n Simple_repeat Simple_repeat 2 34 0 380 247 0 0 chr3 73998106 73998191 -153526387 - MER117 DNA MER1_type -50 147 63 1556 192 0 17 chr3 73998213 73998520 -153526058 + AluJo SINE Alu 1 302 0 420 280 101 24 chr3 73999015 73999222 -153525356 - L2 LINE L2 -21 3292 3070 * 442 314 122 56 chr3 73999214 73999855 -153524723 + L2 LINE L2 2222 2904 -410 271 297 0 0 chr3 74000009 74000073 -153524505 + L2 LINE L2 3250 3313 0 504 282 55 12 chr3 74000233 74000396 -153524182 + MIR SINE MIR 93 262 0 288 77 0 0 chr3 74000920 74000959 -153523619 + (TAA)n Simple_repeat Simple_repeat 3 41 0 229 197 15 45 chr3 74001036 74001102 -153523476 + MLT1E LTR MaLR 57 120 -473 423 180 114 23 chr3 74001213 74001342 -153523236 + MLT1H LTR MaLR 403 547 -2 745 237 38 16 chr3 74001361 74001547 -153523031 - MIR SINE MIR -38 224 35 2323 117 45 34 chr3 74002727 74003085 -153521493 - THE1B LTR MaLR -2 362 1 288 272 0 65 chr3 74003566 74003658 -153520920 - L2 LINE L2 -1 3271 3186 287 324 267 14 chr3 74003820 74004030 -153520548 - L2 LINE L2 -4 3268 3006 548 235 215 0 chr3 74004151 74004300 -153520278 - MER5A DNA MER1_type 0 189 9 593 276 25 6 chr3 74004327 74004490 -153520088 + Charlie8 DNA MER1_type 34 199 -2218 30 0 0 0 chr3 74005565 74005595 -153518983 + AT_rich Low_complexity Low_complexity 1 30 0 351 322 68 7 chr3 74006043 74006189 -153518389 + L2 LINE L2 3118 3272 0 421 274 17 26 chr3 74006239 74006356 -153518222 + MER34 LTR ERV1 1 116 -426 * 564 233 143 67 chr3 74006325 74006760 -153517818 + LTR48B LTR ERV1 162 787 0 185 360 170 0 chr3 74009687 74009787 -153514791 - MIR SINE MIR -58 150 34 354 152 120 16 chr3 74009843 74009944 -153514634 + MER5A DNA MER1_type 4 118 -71 1003 209 60 19 chr3 74009985 74010200 -153514378 - MER58A DNA MER1_type 0 224 1 321 243 146 60 chr3 74011069 74011254 -153513324 - MIR SINE MIR -12 250 50 859 141 4 157 chr3 74011488 74011737 -153512841 - MER20 DNA MER1_type -8 211 1 440 294 181 22 chr3 74011861 74012221 -153512357 + L2 LINE L2 2561 2977 -337 273 262 143 12 chr3 74012360 74012444 -153512134 + L2 LINE L2 3209 3303 -10 744 283 45 20 chr3 74012526 74012770 -153511808 + MIR SINE MIR 13 262 0 2231 109 0 0 chr3 74013943 74014247 -153510331 - AluY SINE Alu -7 304 1 3992 227 51 61 chr3 74015328 74016147 -153508431 + L1MB7 LINE L1 14 803 -5739 240 35 0 0 chr3 74016147 74016176 -153508402 + (CA)n Simple_repeat Simple_repeat 2 30 0 3992 227 51 61 chr3 74016176 74016564 -153508014 + L1MB7 LINE L1 803 1193 -5349 * 5637 104 8 5 chr3 74016555 74017350 -153507228 - L1PA13 LINE L1 -4 6159 5363 2444 227 39 68 chr3 74017335 74018198 -153506380 + L1MB7 LINE L1 1156 1993 -4653 * 4737 174 39 14 chr3 74018192 74018584 -153505994 + L1MB7 LINE L1 5423 5804 -878 2096 114 3 13 chr3 74018584 74018883 -153505695 + AluY SINE Alu 1 296 -15 4737 174 39 14 chr3 74018883 74019699 -153504879 + L1MB7 LINE L1 5804 6672 -10 660 162 31 131 chr3 74019754 74019945 -153504633 + MIR SINE MIR 24 195 -67 512 215 115 0 chr3 74020879 74021009 -153503569 - MER103 DNA DNA -19 147 3 2113 136 0 0 chr3 74021770 74022064 -153502514 + AluSx SINE Alu 1 294 -18 653 211 64 29 chr3 74023574 74023745 -153500833 + MER5B DNA MER1_type 1 177 -1 1557 233 50 19 chr3 74024866 74025244 -153499334 + MLT1B LTR MaLR 1 390 0 2210 121 0 10 chr3 74026649 74026955 -153497623 + AluSq SINE Alu 1 303 -10 870 278 97 83 chr3 74027113 74027429 -153497149 + MLT1K LTR MaLR 1 330 -258 1327 189 55 99 chr3 74027429 74027811 -153496767 + MLT1A1 LTR MaLR 1 365 0 870 278 97 83 chr3 74027811 74028074 -153496504 + MLT1K LTR MaLR 330 588 0 364 269 126 8 chr3 74028142 74028261 -153496317 + MIR SINE MIR 22 154 -108 1083 216 25 49 chr3 74028433 74028553 -153496025 + Charlie1b DNA MER1_type 1 113 -2648 2225 99 3 7 chr3 74028553 74028856 -153495722 - AluSc SINE Alu -7 302 1 1083 216 25 49 chr3 74028856 74028980 -153495598 + Charlie1b DNA MER1_type 113 239 -284 1670 106 125 8 chr3 74028992 74029315 -153495263 + AluSg1 SINE Alu 21 373 0 30 21 0 21 chr3 74029392 74029417 -153495161 + AT_rich Low_complexity Low_complexity 1 26 -21 2129 116 3 3 chr3 74029417 74029702 -153494876 - AluSg SINE Alu -25 285 1 30 21 0 21 chr3 74029702 74029724 -153494854 + AT_rich Low_complexity Low_complexity 26 47 0 3177 160 15 42 chr3 74030748 74031343 -153493235 + L1MB3 LINE L1 5548 6126 -57 312 139 0 13 chr3 74031343 74031401 -153493177 + AluJb SINE Alu 1 47 -253 1811 143 152 12 chr3 74031401 74031730 -153492848 - THE1C LTR MaLR 0 375 1 1560 167 0 4 chr3 74031737 74031994 -153492584 + AluJb SINE Alu 50 305 -7 978 253 68 55 chr3 74032098 74032585 -153491993 + MLT1H LTR MaLR 57 549 0 334 249 96 67 chr3 74032665 74032874 -153491704 - L2 LINE L2 -8 3305 3091 513 237 160 13 chr3 74033299 74033455 -153491123 + MIR SINE MIR 14 192 -70 37 52 0 0 chr3 74033509 74033567 -153491011 + AT_rich Low_complexity Low_complexity 1 58 0 573 82 93 0 chr3 74033568 74033884 -153490694 + (TA)n Simple_repeat Simple_repeat 1 345 0 44 0 0 0 chr3 74033884 74033928 -153490650 + AT_rich Low_complexity Low_complexity 1 44 0 41 0 0 19 chr3 74033990 74034012 -153490566 + AT_rich Low_complexity Low_complexity 1 22 -29 2084 126 3 3 chr3 74034012 74034297 -153490281 + AluSg SINE Alu 1 285 -25 41 0 0 19 chr3 74034297 74034326 -153490252 + AT_rich Low_complexity Low_complexity 22 51 0 430 0 71 0 chr3 74034375 74034445 -153490133 + (TA)n Simple_repeat Simple_repeat 1 75 0 5004 166 49 22 chr3 74034454 74035348 -153489230 + MER21A LTR ERV1 14 931 0 1332 165 119 8 chr3 74035384 74035645 -153488933 - AluSg1 SINE Alu -1 308 19 250 214 56 143 chr3 74036135 74036261 -153488317 + LTR67 LTR ERVL 33 147 -410 668 154 7 44 chr3 74036523 74036659 -153487919 + LTR67 LTR ERVL 427 557 0 361 289 52 22 chr3 74036669 74036804 -153487774 - MIR SINE MIR -3 259 121 427 226 0 21 chr3 74036937 74037030 -153487548 - L2 LINE L2 -28 3285 3195 360 276 19 0 chr3 74037200 74037305 -153487273 - MER117 DNA MER1_type -89 108 2 * 1853 220 57 13 chr3 74037304 74037780 -153486798 - MLT1E2 LTR MaLR -2 624 155 1189 286 59 39 chr3 74037965 74038497 -153486081 - L2 LINE L2 -261 3052 2511 329 361 23 19 chr3 74038497 74038695 -153485883 + MIR SINE MIR 2 198 -64 2588 119 30 5 chr3 74038913 74039284 -153485294 - L1PA11 LINE L1 -2 6172 5793 1649 187 0 34 chr3 74039407 74039701 -153484877 + AluJb SINE Alu 6 289 -23 261 299 62 21 chr3 74040037 74040134 -153484444 + MIR SINE MIR 162 262 0 182 333 0 32 chr3 74042463 74042526 -153482052 - L3 LINE CR1 -1 1576 1516 199 308 0 0 chr3 74042529 74042581 -153481997 + L2 LINE L2 3219 3270 -2 2565 260 44 29 chr3 74042714 74043637 -153480941 + L1MC4 LINE L1 7106 8042 0 4164 180 53 24 chr3 74043823 74044386 -153480192 + L1MB7 LINE L1 5255 5855 -329 2200 145 47 33 chr3 74044386 74044745 -153479833 + THE1B LTR MaLR 1 364 0 4164 180 53 24 chr3 74044745 74045071 -153479507 + L1MB7 LINE L1 5855 6170 -14 2477 151 25 21 chr3 74045088 74045520 -153479058 - Tigger2a DNA MER2_type 0 434 1 841 303 107 11 chr3 74046077 74046433 -153478145 + MLT1K LTR MaLR 11 400 -188 2341 155 21 52 chr3 74046670 74047096 -153477482 + MLT2D LTR ERVL 1 413 -1 335 223 159 3 chr3 74047268 74047373 -153477205 - MIR SINE MIR -47 161 43 642 251 97 35 chr3 74047884 74048203 -153476375 + MER113 DNA MER1_type? 1 339 -182 236 287 125 15 chr3 74048585 74048721 -153475857 + MER113 DNA MER1_type? 338 488 -33 749 253 28 34 chr3 74048792 74049035 -153475543 + MIR SINE MIR 11 255 -7 232 305 16 39 chr3 74049105 74049233 -153475345 - MER102a DNA MER1_type -9 321 197 788 243 15 24 chr3 74049278 74049484 -153475094 - MIR SINE MIR -47 215 12 215 219 0 0 chr3 74049493 74049534 -153475044 - MER5A DNA MER1_type -1 188 148 290 241 284 0 chr3 74049572 74049688 -153474890 - MER5A DNA MER1_type -38 151 3 583 214 14 21 chr3 74049713 74049853 -153474725 - MER102a DNA MER1_type -152 178 40 423 244 23 46 chr3 74049965 74050096 -153474482 - L2 LINE L2 -3 3310 3183 198 208 0 0 chr3 74050830 74050883 -153473695 + (ATG)n Simple_repeat Simple_repeat 1 53 0 210 292 0 0 chr3 74051490 74051538 -153473040 + MIR SINE MIR 106 153 -109 572 279 15 23 chr3 74051929 74052102 -153472476 - MIR SINE MIR -48 214 43 765 227 0 0 chr3 74052259 74052391 -153472187 + FLAM_A SINE Alu 1 132 -1 323 333 34 45 chr3 74052585 74052762 -153471816 - MER5A DNA MER1_type -3 186 12 570 244 54 30 chr3 74053365 74053533 -153471045 - MER5B DNA MER1_type -2 176 5 1229 269 86 37 chr3 74053647 74054237 -153470341 + Charlie7 DNA MER1_type 55 673 -1939 4144 191 31 87 chr3 74054238 74054424 -153470154 + Tigger6a DNA MER2_type 2 197 -1400 2246 112 7 0 chr3 74054424 74054727 -153469851 + AluSg SINE Alu 2 306 -4 4144 191 31 87 chr3 74054727 74055685 -153468893 + Tigger6a DNA MER2_type 197 1082 -1 377 204 0 74 chr3 74055703 74055811 -153468767 + Charlie7 DNA MER1_type 2509 2608 -4 267 252 379 0 chr3 74056034 74056137 -153468441 + MER5A DNA MER1_type 41 182 -7 229 322 52 17 chr3 74056308 74056423 -153468155 - MIR SINE MIR -3 259 141 4438 188 34 14 chr3 74056698 74058092 -153466486 + L1MB8 LINE L1 4600 6026 -152 2141 119 7 0 chr3 74058092 74058387 -153466191 - AluSx SINE Alu -15 297 1 4438 188 34 14 chr3 74058387 74058538 -153466040 + L1MB8 LINE L1 6026 6172 -6 380 246 107 42 chr3 74060271 74060437 -153464141 - MER5A DNA MER1_type -14 164 1 250 315 122 12 chr3 74060638 74060761 -153463817 + MIR3 SINE MIR 31 163 -45 193 255 0 0 chr3 74060766 74060817 -153463761 - MIR SINE MIR -1 261 211 916 229 6 0 chr3 74061489 74061668 -153462910 - MER58A DNA MER1_type 0 224 45 1977 252 169 17 chr3 74064510 74065491 -153459087 - L2 LINE L2 0 3313 2177 739 303 118 52 chr3 74066470 74067030 -153457548 - L2 LINE L2 0 3313 2669 2384 91 0 3 chr3 74067030 74067338 -153457240 + AluSg SINE Alu 1 307 -3 739 303 118 52 chr3 74067338 74067582 -153456996 - L2 LINE L2 -644 2669 2443 326 283 50 0 chr3 74067643 74067742 -153456836 - MIR SINE MIR -35 227 124 345 47 0 0 chr3 74067789 74067832 -153456746 + (TG)n Simple_repeat Simple_repeat 2 44 0 269 252 36 54 chr3 74067847 74067958 -153456620 + MER5A DNA MER1_type 78 186 -3 464 332 78 4 chr3 74068271 74068515 -153456063 - L3b LINE CR1 -63 1520 1259 231 114 0 0 chr3 74068580 74068615 -153455963 + (A)n Simple_repeat Simple_repeat 1 35 0 302 259 42 63 chr3 74068810 74068953 -153455625 - MIR SINE MIR -70 192 53 1176 181 19 14 chr3 74068979 74069195 -153455383 + MER20 DNA MER1_type 3 219 0 336 102 0 0 chr3 74069393 74069442 -153455136 + (A)n Simple_repeat Simple_repeat 1 49 0 2423 92 3 0 chr3 74069442 74069745 -153454833 + AluSp SINE Alu 1 304 -9 750 269 65 0 chr3 74069902 74070103 -153454475 + MIR SINE MIR 12 225 -37 348 331 51 31 chr3 74070354 74070608 -153453970 - MIR SINE MIR -2 260 2 258 263 22 36 chr3 74071606 74071743 -153452835 - L1ME4a LINE L1 -24 6097 5963 265 283 54 11 chr3 74071891 74071983 -153452595 - MIR SINE MIR -70 138 43 325 203 0 29 chr3 74072027 74072095 -153452483 - MER58B DNA MER1_type -17 324 259 634 173 135 8 chr3 74072095 74072228 -153452350 + MER7A DNA MER2_type 1 148 -198 625 206 38 82 chr3 74072264 74072448 -153452130 - MIR SINE MIR -65 197 22 788 236 104 9 chr3 74073128 74073340 -153451238 - MIR SINE MIR -12 250 19 627 274 139 32 chr3 74073496 74073927 -153450651 - MLT1J LTR MaLR -34 477 1 317 298 0 0 chr3 74074758 74074842 -153449736 - MIR SINE MIR -133 129 46 283 255 85 9 chr3 74075332 74075493 -153449085 - Charlie8 DNA MER1_type -2164 253 29 395 298 99 18 chr3 74075601 74075772 -153448806 + MIR SINE MIR 3 187 -75 329 247 67 0 chr3 74076055 74076144 -153448434 - MIR3 SINE MIR -27 181 87 180 291 0 0 chr3 74076379 74076458 -153448120 + CT-rich Low_complexity Low_complexity 2 80 0 342 0 0 0 chr3 74076559 74076597 -153447981 + (TG)n Simple_repeat Simple_repeat 2 39 0 1788 181 58 47 chr3 74077141 74077571 -153447007 - MER54B LTR ERVL 0 793 359 299 227 0 0 chr3 74077983 74078049 -153446529 - L1ME4a LINE L1 -96 6025 5960 675 254 59 74 chr3 74078077 74078483 -153446095 - L1ME4a LINE L1 -239 5882 5483 2617 193 108 29 chr3 74079493 74079794 -153444784 + L1MC4a LINE L1 7090 7366 -442 2159 133 0 0 chr3 74079794 74080094 -153444484 + AluSx SINE Alu 1 300 -12 2617 193 108 29 chr3 74080094 74080457 -153444121 + L1MC4a LINE L1 7366 7807 -1 216 0 0 0 chr3 74081380 74081404 -153443174 + (A)n Simple_repeat Simple_repeat 1 24 0 882 264 98 87 chr3 74081592 74082165 -153442413 + MLT1K LTR MaLR 4 582 -6 1537 188 30 20 chr3 74083629 74083932 -153440646 + AluJo SINE Alu 1 306 -6 200 229 21 0 chr3 74084024 74084072 -153440506 + L2 LINE L2 3245 3293 -20 322 138 0 17 chr3 74084852 74084910 -153439668 - MLT2C1 LTR ERVL 0 515 459 43 20 0 0 chr3 74084912 74084962 -153439616 + AT_rich Low_complexity Low_complexity 1 50 0 186 43 0 0 chr3 74084978 74085001 -153439577 + (GA)n Simple_repeat Simple_repeat 2 24 0 1855 152 40 15 chr3 74085004 74085333 -153439245 - MLT2C1 LTR ERVL -60 337 1 428 269 33 33 chr3 74085390 74085513 -153439065 - L1MB7 LINE L1 -42 6138 6020 227 342 89 31 chr3 74085716 74085941 -153438637 + L2 LINE L2 2544 2781 -533 412 292 101 42 chr3 74086896 74087141 -153437437 + MIR SINE MIR 8 249 -13 689 305 162 24 chr3 74088416 74088793 -153435785 - L2 LINE L2 -8 3305 2877 503 310 70 27 chr3 74089606 74089793 -153434785 - MIR SINE MIR -2 260 66 264 259 58 58 chr3 74089974 74090067 -153434511 + MER113 DNA MER1_type? 31 126 -395 1994 136 10 0 chr3 74090067 74090361 -153434217 - AluSg SINE Alu -12 298 2 264 259 58 58 chr3 74090361 74090441 -153434137 + MER113 DNA MER1_type? 125 204 -317 1163 208 32 4 chr3 74090451 74090701 -153433877 + L1MB8 LINE L1 5922 6178 0 3443 176 40 44 chr3 74090842 74091055 -153433523 + L1MB7 LINE L1 5413 5625 -559 1973 150 13 0 chr3 74091055 74091355 -153433223 - AluSx SINE Alu -8 304 1 3443 176 40 44 chr3 74091355 74091907 -153432671 + L1MB7 LINE L1 5625 6175 -9 573 165 220 0 chr3 74091995 74092104 -153432474 + AluJb SINE Alu 2 134 -178 1537 200 83 55 chr3 74092117 74092502 -153432076 + MSTD LTR MaLR 1 396 0 264 199 99 0 chr3 74092704 74092777 -153431801 + MIR SINE MIR 90 144 -64 628 296 103 55 chr3 74092802 74093636 -153430942 - L2 LINE L2 -1 3312 2425 392 336 15 0 chr3 74093700 74093834 -153430744 + (CCA)n Simple_repeat Simple_repeat 1 136 0 7183 145 31 16 chr3 74093846 74095987 -153428591 + L1MA7 LINE L1 4113 6291 0 230 135 54 0 chr3 74096009 74096046 -153428532 + Alu SINE Alu 81 119 -14 234 307 11 0 chr3 74096071 74096159 -153428419 - L1MC4 LINE L1 -1340 6702 6614 * 270 207 58 46 chr3 74096091 74096178 -153428400 + L1MC4 LINE L1 6615 6702 -1340 296 281 0 0 chr3 74096208 74096297 -153428281 + L1MC4 LINE L1 6615 6703 -1339 222 171 0 0 chr3 74096297 74096338 -153428240 + (TATATG)n Simple_repeat Simple_repeat 3 43 0 230 159 0 0 chr3 74096339 74096383 -153428195 - LTR66 LTR ERVL -169 441 398 233 232 51 10 chr3 74096383 74096492 -153428086 + L1MC4 LINE L1 2006 6983 -1339 1605 196 14 0 chr3 74096525 74096800 -153427778 + AluJo SINE Alu 1 279 -33 296 181 12 0 chr3 74096818 74096901 -153427677 + G-rich Low_complexity Low_complexity 4 87 0 351 234 190 7 chr3 74098360 74098497 -153426081 - MIR SINE MIR -15 247 86 319 332 103 31 chr3 74098880 74099103 -153425475 - L2 LINE L2 -166 3106 2868 227 399 94 0 chr3 74099332 74099470 -153425108 + L2 LINE L2 3121 3271 -1 27 0 0 0 chr3 74099496 74099523 -153425055 + AT_rich Low_complexity Low_complexity 1 27 0 721 281 22 18 chr3 74099535 74099759 -153424819 - MIR SINE MIR -21 241 17 332 370 22 27 chr3 74100093 74100277 -153424301 + MLT1K LTR MaLR 17 199 -389 267 275 163 19 chr3 74100419 74100579 -153423999 + MLT1K LTR MaLR 406 588 0 318 137 0 0 chr3 74100857 74100908 -153423670 - L2 LINE L2 0 3313 3263 250 268 0 72 chr3 74101314 74101411 -153423167 + MER5A DNA MER1_type 95 184 -5 1746 227 22 11 chr3 74101411 74101768 -153422810 + MLT1A1 LTR MaLR 1 361 -4 2050 128 3 7 chr3 74102075 74102397 -153422181 - AluSc SINE Alu 0 309 1 1359 215 42 3 chr3 74102505 74102817 -153421761 - MER33 DNA MER1_type 0 324 1 357 284 100 53 chr3 74103285 74103475 -153421103 + MIR SINE MIR 32 230 -32 23 0 0 0 chr3 74103508 74103531 -153421047 + AT_rich Low_complexity Low_complexity 1 23 0 1094 186 40 16 chr3 74103558 74103805 -153420773 + MER96B DNA MER1_type? 1 253 -164 276 317 58 0 chr3 74105585 74105689 -153418889 - MER103 DNA DNA -1 165 56 303 291 69 44 chr3 74105897 74106100 -153418478 + MIR SINE MIR 55 262 0 204 40 0 0 chr3 74106105 74106130 -153418448 + (CTA)n Simple_repeat Simple_repeat 2 26 0 1990 151 0 16 chr3 74106617 74106934 -153417644 + AluSx SINE Alu 1 312 0 2195 104 13 3 chr3 74107757 74108055 -153416523 + AluSc SINE Alu 1 301 -8 203 281 73 31 chr3 74108819 74108915 -153415663 + L2 LINE L2 3169 3268 -45 22 0 0 0 chr3 74109045 74109067 -153415511 + AT_rich Low_complexity Low_complexity 1 22 0 382 344 31 19 chr3 74109948 74110108 -153414470 - MIR SINE MIR -61 201 40 219 173 58 19 chr3 74110126 74110178 -153414400 + GA-rich Low_complexity Low_complexity 2 55 0 425 302 47 13 chr3 74110716 74110865 -153413713 - MIR SINE MIR -27 235 82 222 233 0 0 chr3 74110932 74110975 -153413603 + (TTCA)n Simple_repeat Simple_repeat 3 45 0 207 279 133 73 chr3 74110984 74111149 -153413429 - L2 LINE L2 -69 3203 3029 27 29 0 0 chr3 74111598 74111632 -153412946 + AT_rich Low_complexity Low_complexity 1 34 0 1416 189 65 53 chr3 74112298 74112385 -153412193 - MER2 DNA MER2_type 0 344 260 1997 137 23 0 chr3 74112385 74112684 -153411894 + AluSq SINE Alu 1 306 -7 1416 189 65 53 chr3 74112684 74112935 -153411643 - MER2 DNA MER2_type -84 260 2 712 255 41 71 chr3 74113089 74113356 -153411222 - MIR SINE MIR 0 262 4 25 31 0 0 chr3 74113746 74113778 -153410800 + AT_rich Low_complexity Low_complexity 1 32 0 747 179 0 0 chr3 74114596 74114713 -153409865 + FLAM_A SINE Alu 5 121 -12 1459 173 35 133 chr3 74115052 74115509 -153409069 - MLT2D LTR ERVL -2 412 1 393 123 0 0 chr3 74115846 74115911 -153408667 + (TG)n Simple_repeat Simple_repeat 2 66 0 534 280 75 5 chr3 74115951 74116137 -153408441 + L2 LINE L2 2066 2264 -1050 388 307 0 10 chr3 74117010 74117111 -153407467 - MIR3 SINE MIR -33 175 76 282 305 91 13 chr3 74117104 74117258 -153407320 + MIR SINE MIR 95 260 -2 * 2385 83 0 13 chr3 74117316 74117616 -153406962 + AluSx SINE Alu 1 296 -16 260 301 175 30 chr3 74118429 74118595 -153405983 + L3 LINE CR1 1344 1533 -44 2102 128 6 10 chr3 74118746 74119059 -153405519 + AluSx SINE Alu 1 312 0 613 265 69 70 chr3 74119623 74120033 -153404545 + MLT1H LTR MaLR 1 549 0 383 316 70 6 chr3 74120442 74120600 -153403978 + MIR SINE MIR 34 201 -61 400 287 82 0 chr3 74120696 74120818 -153403760 + MIR SINE MIR 16 147 -115 22 35 0 0 chr3 74120864 74120893 -153403685 + AT_rich Low_complexity Low_complexity 1 29 0 1709 185 4 0 chr3 74121009 74121290 -153403288 - AluJb SINE Alu -30 282 1 222 118 0 0 chr3 74122259 74122293 -153402285 + (A)n Simple_repeat Simple_repeat 1 34 0 431 243 110 23 chr3 74122418 74122591 -153401987 - MIR SINE MIR -29 233 46 49 60 0 0 chr3 74122864 74122948 -153401630 + AT_rich Low_complexity Low_complexity 1 84 0 254 277 48 12 chr3 74122984 74123067 -153401511 + MIR SINE MIR 45 130 -78 599 306 110 32 chr3 74125322 74125861 -153398717 + L2 LINE L2 2693 3270 -2 936 176 123 0 chr3 74126053 74126240 -153398338 + MER20 DNA MER1_type 10 219 0 622 219 73 6 chr3 74127061 74127225 -153397353 + MIR SINE MIR 74 248 -14 299 243 148 74 chr3 74127398 74127587 -153396991 + MLT1J LTR MaLR 49 251 -260 1696 160 35 21 chr3 74127767 74128049 -153396529 + AluJb SINE Alu 1 286 -26 216 86 0 0 chr3 74128049 74128084 -153396494 + (CA)n Simple_repeat Simple_repeat 2 36 0 1001 171 117 44 chr3 74128231 74128565 -153396013 - MSTD LTR MaLR 0 365 1 1862 123 0 0 chr3 74129314 74129565 -153395013 - AluSx SINE Alu -61 251 1 28 88 0 0 chr3 74131352 74131386 -153393192 + AT_rich Low_complexity Low_complexity 1 34 0 1680 86 0 18 chr3 74131784 74132005 -153392573 - AluSx SINE Alu -37 275 59 2221 99 0 17 chr3 74132073 74132375 -153392203 + AluSg SINE Alu 1 297 -13 350 298 169 30 chr3 74132845 74133211 -153391367 + L2 LINE L2 2883 3299 -14 298 313 71 0 chr3 74133218 74133332 -153391246 + MIR SINE MIR 35 157 -63 277 265 61 42 chr3 74133329 74133511 -153391067 - MIR SINE MIR -1 261 15 * 2271 106 0 3 chr3 74133760 74134063 -153390515 - AluSg SINE Alu -8 302 1 343 253 44 0 chr3 74134476 74134567 -153390011 + MIR SINE MIR 85 179 -83 1836 154 7 7 chr3 74134658 74134951 -153389627 - AluSx SINE Alu -9 303 11 243 170 43 0 chr3 74135469 74135516 -153389062 + L2 LINE L2 3224 3272 0 1706 140 52 197 chr3 74136351 74136479 -153388099 + L1MC3 LINE L1 6707 6852 -933 408 55 0 0 chr3 74136479 74136534 -153388044 + (CA)n Simple_repeat Simple_repeat 1 55 0 1706 140 52 197 chr3 74136534 74136908 -153387670 + L1MC3 LINE L1 6852 7117 -668 1903 137 3 47 chr3 74136908 74137230 -153387348 - AluJo SINE Alu -4 308 1 1706 140 52 197 chr3 74137230 74137306 -153387272 + L1MC3 LINE L1 7117 7202 -583 * 5553 119 89 35 chr3 74137290 74138006 -153386572 + L1MA9 LINE L1 5044 5839 -473 1798 154 45 3 chr3 74138006 74138298 -153386280 + AluSx SINE Alu 1 304 -8 5553 119 89 35 chr3 74138298 74138800 -153385778 + L1MA9 LINE L1 5839 6312 0 878 227 0 0 chr3 74138804 74138976 -153385602 + L1MC3 LINE L1 7614 7785 0 1721 152 51 4 chr3 74139851 74140127 -153384451 - AluJb SINE Alu -6 306 18 663 213 35 0 chr3 74140524 74140665 -153383913 - L1MD2 LINE L1 -13 6346 6201 990 189 112 54 chr3 74140672 74140768 -153383810 - L1MD2 LINE L1 -217 6142 6053 2295 90 3 7 chr3 74140768 74141067 -153383511 + AluSc SINE Alu 1 298 -11 990 189 112 54 chr3 74141067 74141229 -153383349 - L1MD2 LINE L1 -306 6053 5869 31 76 0 0 chr3 74141229 74141295 -153383283 + AT_rich Low_complexity Low_complexity 1 66 0 256 235 0 0 chr3 74142290 74142341 -153382237 - L2 LINE L2 -12 3260 3210 180 329 0 0 chr3 74142864 74142934 -153381644 + MIR SINE MIR 180 249 -13 535 248 136 105 chr3 74142988 74143251 -153381327 - MLT1J2 LTR MaLR -10 440 186 2135 100 3 7 chr3 74143251 74143569 -153381009 - AluSx SINE Alu 0 312 12 535 248 136 105 chr3 74143569 74143594 -153380984 - MLT1J2 LTR MaLR -264 186 163 1961 133 0 20 chr3 74143594 74143894 -153380684 - AluJo SINE Alu -18 294 1 535 248 136 105 chr3 74143894 74144031 -153380547 - MLT1J2 LTR MaLR -287 163 1 363 356 107 0 chr3 74144220 74144397 -153380181 + MIR SINE MIR 67 262 0 351 0 0 0 chr3 74144646 74144685 -153379893 + (CA)n Simple_repeat Simple_repeat 1 39 0 357 43 0 0 chr3 74144741 74144788 -153379790 + (CA)n Simple_repeat Simple_repeat 1 47 0 324 319 72 14 chr3 74145339 74145477 -153379101 + MIR SINE MIR 117 262 0 586 306 45 8 chr3 74146369 74146614 -153377964 - MER102b DNA MER1_type -2 339 86 1644 184 10 10 chr3 74146805 74147098 -153377480 - AluJb SINE Alu -15 297 5 577 173 8 8 chr3 74147966 74148099 -153376479 + CT-rich Low_complexity Low_complexity 2 134 0 21 0 0 0 chr3 74148566 74148587 -153375991 + AT_rich Low_complexity Low_complexity 1 21 0 460 304 31 37 chr3 74148766 74148927 -153375651 + MIR SINE MIR 46 205 -57 2120 136 3 3 chr3 74151339 74151640 -153372938 - AluSx SINE Alu -10 302 2 1434 213 6 28 chr3 74151768 74151891 -153372687 + AluJo SINE Alu 1 125 -187 2253 76 0 13 chr3 74151891 74152195 -153372383 - AluY SINE Alu -11 300 1 1434 213 6 28 chr3 74152195 74152390 -153372188 + AluJo SINE Alu 125 312 0 259 356 37 0 chr3 74153131 74153266 -153371312 - MER102a DNA MER1_type -1 329 190 414 264 0 41 chr3 74153275 74153396 -153371182 - L2 LINE L2 0 3313 3198 2704 138 22 75 chr3 74153397 74153885 -153370693 - L1MA8 LINE L1 0 6291 5833 581 171 0 93 chr3 74153885 74154014 -153370564 - FLAM_C SINE Alu -15 118 2 2704 138 22 75 chr3 74154014 74154069 -153370509 - L1MA8 LINE L1 -458 5833 5777 1974 160 39 9 chr3 74154069 74154405 -153370173 + L1MB5 LINE L1 5792 6125 -59 1781 159 7 26 chr3 74154405 74154713 -153369865 + AluJb SINE Alu 1 302 -10 1974 160 39 9 chr3 74154713 74154758 -153369820 + L1MB5 LINE L1 6125 6167 -17 238 247 25 25 chr3 74154946 74155027 -153369551 - L2 LINE L2 -1252 2062 1982 258 32 0 0 chr3 74155334 74155365 -153369213 + (CAT)n Simple_repeat Simple_repeat 2 32 0 2373 67 27 3 chr3 74155391 74155688 -153368890 + AluY SINE Alu 1 304 -7 652 276 82 0 chr3 74155868 74156064 -153368514 - MIR SINE MIR -3 259 48 381 182 91 45 chr3 74156066 74156198 -153368380 - MER102a DNA MER1_type -123 207 70 3780 184 46 39 chr3 74156198 74156562 -153368016 - L1MB7 LINE L1 -13 6171 5811 1988 118 3 33 chr3 74156562 74156867 -153367711 - AluSg SINE Alu -13 297 2 3780 184 46 39 chr3 74156867 74157465 -153367113 - L1MB7 LINE L1 -373 5811 5118 2248 107 0 0 chr3 74157465 74157477 -153367101 - AluSc SINE Alu -11 298 287 207 0 0 0 chr3 74157477 74157500 -153367078 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2248 107 0 0 chr3 74157500 74157785 -153366793 - AluSc SINE Alu -21 288 1 3780 184 46 39 chr3 74157785 74157799 -153366779 - L1MB7 LINE L1 -1066 5118 5106 660 267 17 52 chr3 74159322 74159554 -153365024 - MIR SINE MIR -21 241 18 1489 175 62 21 chr3 74159733 74160024 -153364554 - AluJb SINE Alu -9 303 1 23 0 0 0 chr3 74160169 74160192 -153364386 + AT_rich Low_complexity Low_complexity 1 23 0 266 234 62 16 chr3 74161328 74161392 -153363186 + L2 LINE L2 3206 3272 0 800 149 0 0 chr3 74161560 74161674 -153362904 + FLAM_C SINE Alu 1 114 -29 282 95 0 0 chr3 74163103 74163145 -153361433 + (TG)n Simple_repeat Simple_repeat 1 42 0 355 274 102 95 chr3 74164370 74164771 -153359807 - L1M2 LINE L1 -5884 965 562 30 0 0 0 chr3 74164910 74164940 -153359638 + GC_rich Low_complexity Low_complexity 1 30 0 359 240 167 42 chr3 74164943 74165135 -153359443 + L1M2 LINE L1 751 966 -5883 195 162 0 0 chr3 74165242 74165279 -153359299 + C-rich Low_complexity Low_complexity 3 39 0 1966 86 10 70 chr3 74167194 74167508 -153357070 - AluSc SINE Alu -14 295 1 1951 131 7 16 chr3 74167954 74168259 -153356319 - AluSx SINE Alu -7 305 4 272 276 90 45 chr3 74168364 74168498 -153356080 + MIR SINE MIR 79 218 -44 2072 102 0 21 chr3 74169181 74169493 -153355085 - AluSx SINE Alu 0 308 3 243 0 0 0 chr3 74170452 74170479 -153354099 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 488 230 47 20 chr3 74170718 74170866 -153353712 - L1MC5 LINE L1 -48 7913 7762 1149 180 66 23 chr3 74171375 74171631 -153352947 + MER58B DNA MER1_type 75 341 0 1646 33 0 0 chr3 74171875 74172059 -153352519 - L1PA4 LINE L1 0 6155 5972 526 268 61 24 chr3 74172592 74172756 -153351822 - MIR SINE MIR -87 175 6 370 310 105 20 chr3 74173968 74174168 -153350410 + MIR SINE MIR 32 248 -14 1935 155 0 25 chr3 74174297 74174613 -153349965 - AluJb SINE Alu 0 312 5 455 271 209 16 chr3 74175555 74175799 -153348779 - L2 LINE L2 -36 3277 2987 1942 128 45 3 chr3 74175800 74176090 -153348488 + AluJb SINE Alu 1 302 -10 2023 302 85 32 chr3 74176310 74177412 -153347166 - L2 LINE L2 -704 2610 1450 1949 168 53 9 chr3 74177577 74177899 -153346679 + MER1B DNA MER1_type 2 337 0 747 271 131 34 chr3 74178432 74178890 -153345688 - L2 LINE L2 -1 3312 2785 200 329 7 84 chr3 74178899 74179054 -153345524 + L2 LINE L2 2889 3031 -241 3292 81 7 3 chr3 74179057 74179531 -153345047 - L1PA8 LINE L1 -138 6031 5564 1033 184 0 0 chr3 74180430 74180593 -153343985 + FRAM SINE Alu 1 163 -3 675 252 91 9 chr3 74180779 74180989 -153343589 - MIR SINE MIR 0 262 36 2372 80 0 0 chr3 74181545 74181846 -153342732 - AluSc SINE Alu -8 301 1 2352 61 10 10 chr3 74182808 74183104 -153341474 - AluY SINE Alu -14 297 2 216 0 0 0 chr3 74183375 74183399 -153341179 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 806 130 17 0 chr3 74183399 74183514 -153341064 - FLAM_C SINE Alu -26 117 1 22 0 0 0 chr3 74184463 74184485 -153340093 + AT_rich Low_complexity Low_complexity 1 22 0 215 287 83 37 chr3 74184756 74184864 -153339714 + L2 LINE L2 2682 2794 -520 311 349 26 5 chr3 74185102 74185294 -153339284 - L1MC4a LINE L1 -1914 5894 5699 554 213 79 74 chr3 74186935 74187083 -153337495 + MIR SINE MIR 40 191 -71 908 162 102 102 chr3 74187083 74187299 -153337279 - MER20 DNA MER1_type -1 218 3 554 213 79 74 chr3 74187299 74187352 -153337226 + MIR SINE MIR 191 242 -20 252 0 0 0 chr3 74187390 74187418 -153337160 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 217 359 66 9 chr3 74187784 74187890 -153336688 + L2 LINE L2 3125 3236 -36 455 317 91 23 chr3 74187899 74188164 -153336414 + Tigger8 DNA MER2_type 29 311 -355 315 255 174 0 chr3 74188336 74188434 -153336144 + L2 LINE L2 3192 3306 -7 300 234 0 0 chr3 74188838 74188902 -153335676 + Tigger8 DNA MER2_type 476 539 -127 870 266 29 16 chr3 74190001 74190245 -153334333 + MIR SINE MIR 6 252 -10 28 0 0 0 chr3 74191258 74191286 -153333292 + AT_rich Low_complexity Low_complexity 1 28 0 293 330 147 26 chr3 74191378 74191684 -153332894 + L2 LINE L2 2311 2653 -661 3408 217 44 30 chr3 74191794 74192559 -153332019 + L1M4 LINE L1 16 794 -5748 378 0 0 0 chr3 74192559 74192601 -153331977 + (CA)n Simple_repeat Simple_repeat 1 42 0 3408 217 44 30 chr3 74192601 74192627 -153331951 + L1M4 LINE L1 794 818 -5724 204 167 24 0 chr3 74192809 74192851 -153331727 + (TAA)n Simple_repeat Simple_repeat 3 45 0 388 268 101 67 chr3 74192887 74193096 -153331482 - MIR SINE MIR -24 238 23 1951 172 11 46 chr3 74193510 74193859 -153330719 + MER1B DNA MER1_type 1 337 0 452 241 236 20 chr3 74194508 74194703 -153329875 + MIR SINE MIR 15 251 -11 304 270 40 30 chr3 74194760 74194860 -153329718 + L2 LINE L2 3213 3313 0 680 277 94 5 chr3 74195024 74195226 -153329352 - MIR SINE MIR -21 241 22 434 309 206 28 chr3 74195233 74195809 -153328769 - L2 LINE L2 -20 3252 2560 * 471 232 199 14 chr3 74195789 74195967 -153328611 - MIR SINE MIR -21 241 26 3121 156 60 6 chr3 74196425 74196946 -153327632 - MER44D DNA MER2_type -1 604 1 2118 144 0 13 chr3 74197027 74197365 -153327213 - AluSx SINE Alu 0 312 1 733 272 82 9 chr3 74197383 74197615 -153326963 - MIR SINE MIR -6 256 8 495 273 34 34 chr3 74198065 74198241 -153326337 - L2 LINE L2 -271 3042 2867 2425 66 0 13 chr3 74198631 74198933 -153325645 + AluY SINE Alu 1 298 -13 231 292 204 7 chr3 74199314 74199451 -153325127 + MIR SINE MIR 29 192 -70 * 459 298 61 61 chr3 74199438 74199577 -153325001 - MIR SINE MIR -10 252 111 1927 125 17 24 chr3 74199577 74199872 -153324706 + AluJb SINE Alu 1 293 -19 459 298 61 61 chr3 74199872 74199977 -153324601 - MIR SINE MIR -150 112 8 1362 270 103 38 chr3 74200007 74200780 -153323798 - L2 LINE L2 -252 3061 2216 29 60 0 0 chr3 74201260 74201310 -153323268 + AT_rich Low_complexity Low_complexity 1 50 0 2238 107 3 0 chr3 74201673 74201971 -153322607 - AluSx SINE Alu -13 299 1 463 232 177 33 chr3 74202120 74202301 -153322277 + MIR SINE MIR 56 262 0 489 206 48 16 chr3 74203265 74203391 -153321187 + MIR SINE MIR 77 206 -56 24 32 0 0 chr3 74204157 74204188 -153320390 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 74204918 74204940 -153319638 + AT_rich Low_complexity Low_complexity 1 22 0 279 0 0 0 chr3 74205109 74205140 -153319438 + (T)n Simple_repeat Simple_repeat 1 31 0 537 304 124 49 chr3 74205503 74205927 -153318651 - L2 LINE L2 -247 3066 2539 2164 99 27 0 chr3 74205927 74206220 -153318358 - AluSx SINE Alu -11 301 1 537 304 124 49 chr3 74206220 74206286 -153318292 - L2 LINE L2 -774 2539 2479 201 274 19 85 chr3 74206334 74206440 -153318138 - L2 LINE L2 -2 3270 3172 229 229 48 60 chr3 74206525 74206608 -153317970 + MER91C DNA MER1_type 1 82 -58 2362 104 0 0 chr3 74206973 74207282 -153317296 - AluSx SINE Alu -3 309 1 1391 81 50 0 chr3 74208522 74208720 -153315858 + AluY SINE Alu 100 307 -4 409 348 0 19 chr3 74208773 74208928 -153315650 + MER5A DNA MER1_type 17 168 -21 789 190 77 20 chr3 74209719 74210044 -153314534 + MER113 DNA MER1_type? 81 443 -78 911 280 135 50 chr3 74212134 74212952 -153311626 - L2 LINE L2 0 3313 2424 23 0 0 0 chr3 74213285 74213308 -153311270 + AT_rich Low_complexity Low_complexity 1 23 0 350 335 40 0 chr3 74213493 74213669 -153310909 - L1MC4a LINE L1 -1922 5886 5704 392 191 21 21 chr3 74213872 74213966 -153310612 + L1MA9 LINE L1 6219 6312 0 28 48 0 0 chr3 74213993 74214035 -153310543 + AT_rich Low_complexity Low_complexity 1 42 0 2088 143 0 0 chr3 74214684 74214978 -153309600 - AluSx SINE Alu -18 294 1 2066 154 0 0 chr3 74215178 74215489 -153309089 - AluJb SINE Alu -1 311 1 625 324 44 24 chr3 74215864 74216268 -153308310 - L1MC4a LINE L1 -592 5586 5519 342 45 0 0 chr3 74216339 74216383 -153308195 + (CA)n Simple_repeat Simple_repeat 2 45 0 23 33 0 0 chr3 74216478 74216508 -153308070 + AT_rich Low_complexity Low_complexity 1 30 0 286 255 85 28 chr3 74217472 74217578 -153307000 - MIR SINE MIR -1 261 150 752 196 135 0 chr3 74219225 74219373 -153305205 - FRAM SINE Alu -5 171 4 22 35 0 0 chr3 74223935 74223964 -153300614 + AT_rich Low_complexity Low_complexity 1 29 0 253 224 0 65 chr3 74224046 74224153 -153300425 - MER113 DNA MER1_type? -420 101 2 252 0 0 0 chr3 74224196 74224224 -153300354 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 402 273 128 32 chr3 74225279 74225466 -153299112 - MIR SINE MIR -38 224 20 2543 206 50 23 chr3 74225790 74226396 -153298182 - LTR27 LTR ERV1 0 636 15 756 263 5 19 chr3 74226769 74226974 -153297604 + MIR SINE MIR 33 234 -28 946 171 17 17 chr3 74230371 74230547 -153294031 + MER5B DNA MER1_type 3 178 0 23 0 0 0 chr3 74231269 74231292 -153293286 + AT_rich Low_complexity Low_complexity 1 23 0 529 270 31 18 chr3 74232644 74232807 -153291771 - MIR SINE MIR -7 255 91 366 277 213 6 chr3 74232817 74232995 -153291583 + MIR SINE MIR 38 250 -12 324 0 0 0 chr3 74234897 74234933 -153289645 + (TG)n Simple_repeat Simple_repeat 2 37 0 698 143 8 34 chr3 74235783 74235902 -153288676 + FLAM_A SINE Alu 16 131 -11 25 0 0 0 chr3 74235906 74235931 -153288647 + AT_rich Low_complexity Low_complexity 1 25 0 2737 167 12 12 chr3 74236943 74237130 -153287448 - L1MB1 LINE L1 -51 6117 5931 728 298 26 30 chr3 74237130 74237469 -153287109 - L1PA8A LINE L1 -206 5925 5588 306 355 57 55 chr3 74238059 74238610 -153285968 - L2 LINE L2 0 3272 2737 237 239 155 0 chr3 74238862 74238933 -153285645 - L2 LINE L2 -39 3274 3193 1902 127 62 53 chr3 74241729 74242069 -153282509 - MER2 DNA MER2_type 0 344 2 219 239 310 0 chr3 74243593 74243664 -153280914 - MIR SINE MIR -122 140 48 346 291 36 30 chr3 74243714 74243879 -153280699 - L2 LINE L2 -259 3054 2889 371 219 39 112 chr3 74244056 74244234 -153280344 + MER103 DNA DNA 1 165 -1 207 69 0 0 chr3 74245549 74245578 -153279000 + (T)n Simple_repeat Simple_repeat 1 29 0 1016 32 0 16 chr3 74245619 74245744 -153278834 + AluY SINE Alu 178 300 -11 261 268 195 24 chr3 74246135 74246258 -153278320 - MER5A DNA MER1_type -14 175 32 562 205 128 39 chr3 74246303 74246459 -153278119 - MER5B DNA MER1_type -7 171 2 2272 123 0 0 chr3 74246499 74246808 -153277770 - AluSx SINE Alu -3 309 1 262 328 0 0 chr3 74247317 74247384 -153277194 - L2 LINE L2 -17 3255 3189 240 111 0 0 chr3 74248243 74248279 -153276299 + (TCC)n Simple_repeat Simple_repeat 2 37 0 216 0 0 0 chr3 74248891 74248915 -153275663 + (A)n Simple_repeat Simple_repeat 1 24 0 2047 115 21 3 chr3 74249248 74249535 -153275043 + AluSx SINE Alu 1 292 -20 263 174 0 0 chr3 74250614 74250660 -153273918 + L1MC4 LINE L1 6657 6702 -1340 23 0 0 0 chr3 74254493 74254516 -153270062 + AT_rich Low_complexity Low_complexity 1 23 0 192 184 0 0 chr3 74254750 74254799 -153269779 + (TG)n Simple_repeat Simple_repeat 2 50 0 24 0 0 0 chr3 74255149 74255173 -153269405 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr3 74255478 74255502 -153269076 + (T)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr3 74255702 74255730 -153268848 + AT_rich Low_complexity Low_complexity 1 28 0 369 312 155 44 chr3 74257466 74257879 -153266699 - L2 LINE L2 -681 2633 2175 412 260 177 10 chr3 74257937 74258129 -153266449 - MIR SINE MIR -21 241 18 293 347 149 19 chr3 74258953 74259328 -153265250 - L2 LINE L2 -2517 797 374 207 0 0 0 chr3 74259622 74259645 -153264933 + (A)n Simple_repeat Simple_repeat 1 23 0 988 110 264 0 chr3 74260710 74260892 -153263686 - MER30 DNA MER1_type 0 230 1 267 231 77 44 chr3 74260957 74261048 -153263530 - MER102a DNA MER1_type 0 330 237 253 185 37 37 chr3 74261588 74261669 -153262909 - L1M4 LINE L1 -2171 3975 3895 227 235 216 7 chr3 74262072 74262183 -153262395 + L2 LINE L2 2968 3054 -259 210 71 0 0 chr3 74262183 74262211 -153262367 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 227 235 216 7 chr3 74262211 74262252 -153262326 + L2 LINE L2 3054 3152 -161 199 222 136 25 chr3 74264051 74264132 -153260446 - MIR SINE MIR -113 149 60 491 273 148 30 chr3 74264640 74265084 -153259494 + L2 LINE L2 2553 3046 -267 195 299 30 0 chr3 74265462 74265529 -153259049 + MIR3 SINE MIR 87 155 -53 292 303 222 26 chr3 74266532 74266766 -153257812 - L2 LINE L2 -20 3293 3014 296 302 252 17 chr3 74266870 74267350 -153257228 - L2 LINE L2 -820 2494 1902 396 240 166 44 chr3 74267350 74267779 -153256799 + L1ME LINE L1 5364 5840 -302 2225 89 4 0 chr3 74268179 74268486 -153256092 + AluY SINE Alu 1 308 0 3904 158 88 8 chr3 74268833 74269590 -153254988 + L1MB7 LINE L1 5365 6182 -2 592 192 152 13 chr3 74270542 74270693 -153253885 - MER58C DNA MER1_type 0 215 44 517 236 69 7 chr3 74271776 74271920 -153252658 + L1MC5 LINE L1 7755 7907 -54 978 243 94 50 chr3 74272278 74272714 -153251864 + L1MC4 LINE L1 6752 7206 -836 330 148 16 0 chr3 74272849 74272910 -153251668 + L1ME4a LINE L1 6060 6121 0 382 285 274 0 chr3 74272939 74273125 -153251453 - MIR SINE MIR -6 256 20 488 287 36 49 chr3 74273274 74273676 -153250902 + L1MC4a LINE L1 5525 5920 -246 2207 113 0 7 chr3 74273798 74274099 -153250479 + AluSq SINE Alu 1 299 -14 327 291 61 47 chr3 74276128 74276276 -153248302 - MIR SINE MIR -93 169 20 2221 110 0 0 chr3 74276447 74276739 -153247839 - AluSx SINE Alu -20 292 1 385 252 50 54 chr3 74276742 74277000 -153247578 - L1ME LINE L1 -321 5800 5544 455 242 67 0 chr3 74277209 74277329 -153247249 - L2 LINE L2 0 3313 3186 2234 98 3 29 chr3 74277469 74277785 -153246793 - AluSx SINE Alu -4 308 1 279 276 39 82 chr3 74277785 74278064 -153246514 - L1ME LINE L1 -325 5796 5530 1565 241 35 52 chr3 74278075 74278159 -153246419 - MER39 LTR ERV1 0 707 623 1928 125 75 0 chr3 74278159 74278440 -153246138 + AluSg SINE Alu 1 302 -8 1565 241 35 52 chr3 74278440 74278888 -153245690 - MER39 LTR ERV1 -84 623 1 277 281 41 0 chr3 74278939 74279060 -153245518 - L1P4 LINE L1 -740 5434 5309 1214 224 3 45 chr3 74281897 74282187 -153242391 + L1MC4a LINE L1 5585 5862 -1946 32 44 0 29 chr3 74282604 74282631 -153241947 + AT_rich Low_complexity Low_complexity 1 27 -39 1733 146 14 7 chr3 74282631 74282918 -153241660 - AluJo SINE Alu -23 289 1 32 44 0 29 chr3 74282918 74282958 -153241620 + AT_rich Low_complexity Low_complexity 27 66 0 902 218 95 25 chr3 74283851 74284094 -153240484 - MIR SINE MIR 0 262 3 705 186 96 48 chr3 74284829 74285017 -153239561 + L1MB4 LINE L1 5938 6134 -46 1010 182 17 0 chr3 74285017 74285198 -153239380 + AluJb SINE Alu 121 304 -8 21 36 0 0 chr3 74285222 74285250 -153239328 + AT_rich Low_complexity Low_complexity 1 28 0 2003 125 31 0 chr3 74285818 74286107 -153238471 - AluSx SINE Alu -12 300 3 208 91 30 0 chr3 74286552 74286585 -153237993 - MER91B DNA MER1_type -124 66 33 378 250 114 28 chr3 74286632 74286918 -153237660 + HAL1b LINE L1 364 1651 -673 324 289 70 89 chr3 74287150 74288029 -153236549 + L1M4 LINE L1 2597 3459 -2687 261 274 121 6 chr3 74288101 74288258 -153236320 + L1MC4 LINE L1 7705 7879 -163 693 232 46 10 chr3 74288307 74288501 -153236077 + L1M4 LINE L1 4740 4940 -1206 287 276 16 47 chr3 74288616 74288743 -153235835 - LTR67 LTR ERVL 0 557 435 1586 187 24 0 chr3 74289601 74289890 -153234688 - MLT1B LTR MaLR 0 390 95 1949 120 57 0 chr3 74289907 74290190 -153234388 - AluSx SINE Alu -13 299 1 578 299 34 19 chr3 74290195 74290402 -153234176 + MIR SINE MIR 53 262 0 237 349 118 26 chr3 74291564 74291793 -153232785 + L2 LINE L2 2398 2647 -667 180 0 0 0 chr3 74293227 74293247 -153231331 + (CAAAG)n Simple_repeat Simple_repeat 1 20 0 2242 135 0 0 chr3 74293678 74293982 -153230596 - AluSx SINE Alu -8 304 1 29 0 0 0 chr3 74294632 74294661 -153229917 + AT_rich Low_complexity Low_complexity 1 29 0 2484 83 0 6 chr3 74294661 74294974 -153229604 - AluY SINE Alu 0 311 1 1076 65 58 0 chr3 74295337 74295475 -153229103 - L1PB2 LINE L1 -7 6144 5999 29 0 0 0 chr3 74295623 74295652 -153228926 + AT_rich Low_complexity Low_complexity 1 29 0 4874 106 32 0 chr3 74295652 74296390 -153228188 - L1PB2 LINE L1 -165 5986 5226 21 0 0 0 chr3 74296441 74296462 -153228116 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 74297412 74297432 -153227146 + (TG)n Simple_repeat Simple_repeat 1 20 0 641 188 91 19 chr3 74297741 74297895 -153226683 + MSTA LTR MaLR 31 195 -233 2801 26 0 0 chr3 74297895 74298206 -153226372 + AluY SINE Alu 1 311 0 342 279 8 66 chr3 74298431 74298553 -153226025 - MER5A DNA MER1_type -68 121 7 585 203 52 14 chr3 74298607 74298800 -153225778 - LTR27 LTR ERV1 0 501 328 1191 133 0 0 chr3 74298955 74299135 -153225443 - LTR27 LTR ERV1 -303 333 154 1704 128 44 11 chr3 74299135 74299408 -153225170 + AluSx SINE Alu 1 282 -30 517 224 30 12 chr3 74299509 74299674 -153224904 - L1M4 LINE L1 -871 5275 5108 2743 197 115 30 chr3 74299696 74300787 -153223791 - L1M4 LINE L1 -4831 2024 942 1340 195 32 111 chr3 74300785 74301154 -153223424 - L1M4 LINE L1 -6509 350 11 * 460 209 0 0 chr3 74301214 74301305 -153223273 + L2 LINE L2 3223 3313 0 349 255 9 28 chr3 74301677 74301783 -153222795 + MIR SINE MIR 46 149 -113 2628 188 105 87 chr3 74301932 74302744 -153221834 - LTR1B LTR ERV1 0 826 1 2236 106 3 10 chr3 74303177 74303488 -153221090 + AluSc SINE Alu 1 309 0 258 275 263 25 chr3 74303642 74303802 -153220776 + MIR SINE MIR 55 252 -10 192 293 0 0 chr3 74303769 74303810 -153220768 + L2 LINE L2 3224 3264 -8 * 274 261 54 22 chr3 74304631 74304723 -153219855 - MIR SINE MIR -70 192 98 1629 143 40 50 chr3 74304804 74305104 -153219474 + AluJb SINE Alu 1 297 -15 834 207 37 32 chr3 74305637 74305825 -153218753 + MER5A DNA MER1_type 1 189 0 882 248 116 0 chr3 74305978 74306176 -153218402 - MER58A DNA MER1_type 0 224 4 290 291 63 16 chr3 74306189 74306316 -153218262 + Charlie8 DNA MER1_type 131 263 -2154 240 256 39 26 chr3 74306400 74306478 -153218100 + (CATG)n Simple_repeat Simple_repeat 2 80 0 309 336 34 13 chr3 74307917 74308066 -153216512 - MIR SINE MIR -109 153 2 956 230 33 5 chr3 74308210 74308423 -153216155 - MER20 DNA MER1_type 0 219 1 797 194 167 31 chr3 74308475 74308702 -153215876 + MIR SINE MIR 5 262 0 224 274 0 0 chr3 74308733 74308784 -153215794 - MIR3 SINE MIR -54 154 104 288 0 0 0 chr3 74309574 74309606 -153214972 + (TG)n Simple_repeat Simple_repeat 2 33 0 219 229 0 0 chr3 74309608 74309656 -153214922 + GA-rich Low_complexity Low_complexity 1 48 0 2127 133 10 0 chr3 74310935 74311237 -153213341 + AluSx SINE Alu 3 307 -5 840 189 15 80 chr3 74311495 74311696 -153212882 - MER5A DNA MER1_type 0 189 2 402 301 15 30 chr3 74311984 74312117 -153212461 - MIR3 SINE MIR -40 168 38 203 77 0 26 chr3 74313606 74313645 -153210933 + (CAAAA)n Simple_repeat Simple_repeat 3 40 0 2300 132 119 10 chr3 74314026 74314412 -153210166 - MSTA LTR MaLR 0 428 1 226 261 125 23 chr3 74314747 74314835 -153209743 + L2 LINE L2 3184 3280 -33 1066 168 32 16 chr3 74315182 74315367 -153209211 - MER20 DNA MER1_type -2 217 30 249 273 73 45 chr3 74315431 74315541 -153209037 + MLT1K LTR MaLR 133 245 -343 434 211 291 13 chr3 74315821 74316058 -153208520 + L2 LINE L2 2944 3246 -67 183 42 0 0 chr3 74316093 74316117 -153208461 + (CAAT)n Simple_repeat Simple_repeat 2 25 0 356 264 11 0 chr3 74316832 74316923 -153207655 - L2 LINE L2 -8 3305 3214 224 118 0 0 chr3 74317124 74317158 -153207420 + MIR SINE MIR 158 191 -71 346 256 29 73 chr3 74317667 74317748 -153206830 + MIR3 SINE MIR 77 151 -57 1026 222 42 5 chr3 74317748 74317960 -153206618 - MER58A DNA MER1_type 0 224 5 346 256 29 73 chr3 74317960 74318015 -153206563 + MIR3 SINE MIR 151 207 -1 705 343 20 8 chr3 74318097 74318351 -153206227 - MIR SINE MIR 0 262 6 230 275 44 55 chr3 74319595 74319686 -153204892 + L2 LINE L2 2977 3066 -206 428 259 152 7 chr3 74319776 74319960 -153204618 + MIR SINE MIR 18 228 -34 1264 278 65 34 chr3 74320628 74321124 -153203454 + MLT1J LTR MaLR 1 511 0 1745 190 71 8 chr3 74321150 74321503 -153203075 + MER58D DNA MER1_type 12 386 0 2258 156 19 19 chr3 74322744 74323109 -153201469 + MLT1A1 LTR MaLR 1 365 0 1773 237 70 21 chr3 74323213 74323515 -153201063 + L1ME3A LINE L1 5655 5992 -178 2119 98 0 14 chr3 74323515 74323877 -153200701 + AluY SINE Alu 1 358 0 1773 237 70 21 chr3 74323877 74324058 -153200520 + L1ME3A LINE L1 5992 6163 -7 289 264 55 9 chr3 74324262 74324372 -153200206 - MIR SINE MIR -41 221 107 1172 225 173 43 chr3 74324491 74324936 -153199642 + MLT1D LTR MaLR 2 504 -1 369 261 42 17 chr3 74325031 74325150 -153199428 + MER103 DNA DNA 38 159 -7 275 218 0 0 chr3 74325335 74325390 -153199188 + MIR3 SINE MIR 147 201 -7 368 206 33 11 chr3 74325410 74325502 -153199076 - MER117 DNA MER1_type -47 150 57 23 33 0 0 chr3 74326235 74326265 -153198313 + AT_rich Low_complexity Low_complexity 1 30 0 547 300 167 31 chr3 74326313 74326977 -153197601 - L2 LINE L2 -2 3311 2551 767 202 29 12 chr3 74326993 74327166 -153197412 - L1ME2 LINE L1 0 6164 5989 442 296 11 51 chr3 74327186 74327362 -153197216 - L2 LINE L2 -769 2545 2377 25 31 0 0 chr3 74327823 74327855 -153196723 + AT_rich Low_complexity Low_complexity 1 32 0 621 224 59 26 chr3 74327926 74328078 -153196500 - MIR SINE MIR 0 262 106 1227 108 20 5 chr3 74328472 74328667 -153195911 - L1MA4 LINE L1 -6 6294 6097 404 176 11 70 chr3 74328677 74328864 -153195714 + (TTATA)n Simple_repeat Simple_repeat 4 179 0 808 229 146 60 chr3 74329354 74329690 -153194888 - MLT1J2 LTR MaLR 0 450 86 324 0 0 0 chr3 74329690 74329726 -153194852 + (A)n Simple_repeat Simple_repeat 1 36 0 195 260 100 0 chr3 74330794 74330844 -153193734 - L2 LINE L2 -13 3259 3205 208 225 0 0 chr3 74330869 74330909 -153193669 - MIR SINE MIR -115 147 108 372 297 17 25 chr3 74330976 74331094 -153193484 - MIR3 SINE MIR -22 186 70 1792 142 26 43 chr3 74331168 74331470 -153193108 - AluJo SINE Alu -15 297 1 552 259 29 0 chr3 74331617 74331756 -153192822 + MIR SINE MIR 84 226 -36 342 0 0 0 chr3 74332341 74332379 -153192199 + (T)n Simple_repeat Simple_repeat 1 38 0 360 297 155 65 chr3 74332391 74332714 -153191864 + MLT1J2 LTR MaLR 99 450 0 716 263 31 16 chr3 74333006 74333200 -153191378 + MLT1J LTR MaLR 310 506 -5 193 77 128 0 chr3 74334131 74334170 -153190408 - L2 LINE L2 0 3313 3270 268 214 10 10 chr3 74334240 74334338 -153190240 + (TA)n Simple_repeat Simple_repeat 2 99 0 630 307 33 52 chr3 74334344 74334442 -153190136 - L1MC4a LINE L1 -1876 5932 5834 1976 146 7 0 chr3 74334442 74334737 -153189841 - AluSx SINE Alu -15 297 1 630 307 33 52 chr3 74334737 74335003 -153189575 - L1MC4a LINE L1 -1974 5834 5575 1323 241 22 22 chr3 74335674 74335989 -153188589 + Charlie4a DNA MER1_type 1 315 -193 6175 117 12 3 chr3 74336201 74337509 -153187069 - L1PA16 LINE L1 -9 6157 4828 474 289 52 21 chr3 74337750 74337944 -153186634 - L1ME LINE L1 -479 5683 5484 514 230 0 30 chr3 74338091 74338226 -153186352 + L2 LINE L2 3183 3313 0 638 258 68 21 chr3 74339013 74339203 -153185375 + MIR SINE MIR 46 244 -18 2151 80 0 0 chr3 74339574 74339838 -153184740 + L1PA5 LINE L1 5888 6151 -3 859 148 0 0 chr3 74339838 74339966 -153184612 - AluSg SINE Alu -182 128 1 721 189 171 23 chr3 74340237 74340256 -153184322 - MIR SINE MIR -48 214 199 1170 194 21 30 chr3 74340256 74340493 -153184085 - MER46A DNA MER2_type -1 235 1 721 189 171 23 chr3 74340493 74340648 -153183930 - MIR SINE MIR -63 199 14 1186 133 0 0 chr3 74341583 74341749 -153182829 - AluSg/x SINE Alu -12 300 135 22 56 0 0 chr3 74341928 74341964 -153182614 + AT_rich Low_complexity Low_complexity 1 36 0 276 246 138 43 chr3 74342991 74343129 -153181449 - MIR SINE MIR -72 190 40 * 398 286 109 33 chr3 74343094 74343304 -153181274 + MIR SINE MIR 36 261 -1 361 210 121 40 chr3 74343576 74343700 -153180878 + L1ME3A LINE L1 6036 6169 -1 857 288 4 28 chr3 74344297 74344547 -153180031 - MIR SINE MIR -2 260 17 1623 131 82 19 chr3 74345143 74345411 -153179167 + AluJb SINE Alu 21 305 -7 21 57 0 0 chr3 74345707 74345742 -153178836 + AT_rich Low_complexity Low_complexity 1 35 0 1398 204 54 40 chr3 74345745 74346000 -153178578 + L1 LINE L1 4120 4370 -1776 1513 97 0 80 chr3 74346000 74346237 -153178341 + AluSq SINE Alu 85 302 -11 1398 204 54 40 chr3 74346237 74346257 -153178321 + L1 LINE L1 4370 4388 -1758 405 95 0 0 chr3 74346257 74346320 -153178258 + (CA)n Simple_repeat Simple_repeat 2 64 0 1398 204 54 40 chr3 74346320 74346470 -153178108 + L1 LINE L1 4388 4552 -1594 331 338 14 29 chr3 74346678 74346885 -153177693 + MIR SINE MIR 35 238 -24 1413 285 164 13 chr3 74347032 74347740 -153176838 - MER45C DNA AcHobo -85 868 54 364 252 219 0 chr3 74347776 74347899 -153176679 + MIR3 SINE MIR 49 198 -10 396 231 67 0 chr3 74347904 74348008 -153176570 + MIR3 SINE MIR 71 181 -27 1523 246 36 6 chr3 74348522 74348879 -153175699 + MER87 LTR ERV1 174 541 0 201 74 0 0 chr3 74348879 74348906 -153175672 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 500 311 117 19 chr3 74348907 74349044 -153175534 + L2 LINE L2 2605 2727 -586 1642 279 49 14 chr3 74349044 74349535 -153175043 - MLT1J LTR MaLR -2 509 2 500 311 117 19 chr3 74349535 74349873 -153174705 + L2 LINE L2 2727 3131 -182 232 270 68 0 chr3 74349962 74350036 -153174542 + L2 LINE L2 3179 3257 -56 246 281 79 29 chr3 74350485 74350624 -153173954 + L2 LINE L2 2253 2398 -916 1041 131 25 0 chr3 74350697 74350857 -153173721 - MER20 DNA MER1_type 0 219 56 509 245 51 56 chr3 74350869 74351085 -153173493 + MIR SINE MIR 15 229 -33 229 295 214 44 chr3 74351116 74351547 -153173031 + L2 LINE L2 2467 2970 -344 504 290 9 134 chr3 74351647 74351871 -153172707 + MER91A DNA MER1_type 1 196 0 708 218 0 0 chr3 74352025 74352149 -153172429 + FLAM_A SINE Alu 1 124 -9 389 325 45 6 chr3 74352464 74352621 -153171957 - MIR3 SINE MIR -21 187 25 457 305 55 12 chr3 74353168 74353332 -153171246 + MIR SINE MIR 21 191 -71 267 385 33 8 chr3 74353428 74353550 -153171028 + L2 LINE L2 3143 3267 -5 1298 203 104 50 chr3 74353630 74354053 -153170525 + MLT1C LTR MaLR 22 467 0 251 228 43 0 chr3 74354505 74354597 -153169981 - AluS SINE Alu -206 96 1 516 203 55 77 chr3 74354600 74354782 -153169796 - L1ME4a LINE L1 -10 6111 5934 653 263 55 28 chr3 74355108 74355325 -153169253 + MLT1K LTR MaLR 310 532 -56 524 253 175 0 chr3 74355556 74355710 -153168868 - MER5A DNA MER1_type 0 189 9 456 280 65 54 chr3 74355723 74355806 -153168772 + MIR SINE MIR 4 85 -177 2149 132 0 16 chr3 74355806 74356117 -153168461 - AluSx SINE Alu -6 306 1 456 280 65 54 chr3 74356117 74356219 -153168359 + MIR SINE MIR 85 191 -71 342 361 49 7 chr3 74356269 74356413 -153168165 + MER5A DNA MER1_type 3 152 -37 8495 184 15 5 chr3 74356413 74358985 -153165593 + L1PA16 LINE L1 3566 6165 -1 11538 181 56 29 chr3 74359446 74361801 -153162777 + Cheshire DNA MER1_type 1 2419 -1 333 271 141 76 chr3 74361922 74362199 -153162379 + L2 LINE L2 2931 3225 -47 554 269 70 86 chr3 74363657 74363914 -153160664 - MIR SINE MIR -2 260 8 434 214 22 0 chr3 74364650 74364739 -153159839 + MER5A DNA MER1_type 2 92 -97 189 0 0 0 chr3 74364753 74364774 -153159804 + (TTTTG)n Simple_repeat Simple_repeat 1 21 0 1420 185 25 43 chr3 74364778 74365059 -153159519 - AluJo SINE Alu -36 276 1 335 155 0 0 chr3 74365066 74365124 -153159454 + MER5A DNA MER1_type 132 189 0 333 232 78 56 chr3 74365125 74365267 -153159311 + MER103 DNA DNA 20 164 -2 18831 48 4 0 chr3 74365479 74367809 -153156769 - L1P LINE L1 -828 5318 2981 1338 122 0 0 chr3 74367810 74367998 -153156580 + AluSp SINE Alu 122 309 -4 506 233 156 4 chr3 74368001 74368167 -153156411 + MIR SINE MIR 6 191 -67 189 0 0 0 chr3 74368175 74368196 -153156382 + (TG)n Simple_repeat Simple_repeat 2 22 0 233 256 0 39 chr3 74368238 74368316 -153156262 + MIR SINE MIR 185 259 -3 356 158 13 26 chr3 74369496 74369572 -153155006 + L2 LINE L2 3213 3287 -26 257 0 0 29 chr3 74369585 74369619 -153154959 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 291 268 6 134 chr3 74369656 74369820 -153154758 - L2 LINE L2 -212 3060 2918 248 288 42 17 chr3 74370996 74371114 -153153464 + CT-rich Low_complexity Low_complexity 1 121 0 385 301 120 43 chr3 74371266 74371542 -153153036 + L1ME LINE L1 5516 5812 -309 227 273 0 0 chr3 74371799 74371854 -153152724 + L1ME LINE L1 5872 5926 -236 21 0 0 0 chr3 74371927 74371948 -153152630 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 74371994 74372017 -153152561 + AT_rich Low_complexity Low_complexity 1 23 0 183 298 0 0 chr3 74372115 74372162 -153152416 - MIR SINE MIR -3 259 213 367 318 109 36 chr3 74373634 74373854 -153150724 - MIR SINE MIR -2 260 25 2005 128 39 0 chr3 74374577 74374859 -153149719 + AluSx SINE Alu 4 296 -16 2105 101 35 0 chr3 74374960 74375248 -153149330 - AluSx SINE Alu -14 298 1 660 240 111 90 chr3 74375291 74375606 -153148972 + L2 LINE L2 2607 2942 -371 1802 186 0 0 chr3 74375606 74375897 -153148681 + AluSx SINE Alu 6 296 -16 660 240 111 90 chr3 74375897 74376085 -153148493 + L2 LINE L2 2942 3125 -188 2073 179 36 31 chr3 74376253 74376803 -153147775 - MLT2A2 LTR ERVL 0 554 1 2300 71 0 0 chr3 74377591 74377898 -153146680 + AluY SINE Alu 1 307 0 434 355 28 0 chr3 74377973 74378114 -153146464 + L2 LINE L2 3164 3308 -5 209 350 0 0 chr3 74378527 74378587 -153145991 + MIR SINE MIR 10 69 -193 677 184 135 5 chr3 74379020 74379182 -153145396 - MER5A DNA MER1_type 0 189 4 462 321 97 8 chr3 74379360 74379494 -153145084 - L2 LINE L2 0 3272 3127 254 281 294 26 chr3 74379604 74379832 -153144746 - L2 LINE L2 -337 2977 2689 365 262 129 29 chr3 74379832 74380039 -153144539 + L1MC5 LINE L1 7249 7472 -534 * 390 260 149 55 chr3 74380038 74380346 -153144232 + L1MC4 LINE L1 7540 7876 -166 1482 194 112 66 chr3 74380346 74380399 -153144179 + MLT1F1 LTR MaLR 93 142 -425 2463 138 22 0 chr3 74380399 74380755 -153143823 + THE1B LTR MaLR 1 364 0 1482 194 112 66 chr3 74380755 74381155 -153143423 + MLT1F1 LTR MaLR 142 567 0 330 231 28 0 chr3 74381155 74381248 -153143330 - L1PA8A LINE L1 -334 5797 5697 2015 132 18 0 chr3 74381352 74381633 -153142945 - AluSx SINE Alu -15 297 12 231 300 0 0 chr3 74381827 74381897 -153142681 + T-rich Low_complexity Low_complexity 13 82 0 29 28 0 0 chr3 74382027 74382063 -153142515 + AT_rich Low_complexity Low_complexity 1 36 0 513 257 59 0 chr3 74382219 74382355 -153142223 - MIR SINE MIR -27 235 92 2389 58 0 10 chr3 74383107 74383400 -153141178 + L1PA5 LINE L1 5865 6154 0 388 283 17 17 chr3 74383850 74383970 -153140608 + MIR SINE MIR 109 228 -34 213 71 0 0 chr3 74383984 74384012 -153140566 - MER91B DNA MER1_type -128 62 35 312 113 0 19 chr3 74384051 74384117 -153140461 - MLT2D LTR ERVL -7 508 396 359 41 20 0 chr3 74384120 74384169 -153140409 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 2169 164 11 0 chr3 74384304 74384652 -153139926 - MLT2D LTR ERVL -62 352 1 1839 183 44 55 chr3 74384668 74384975 -153139603 + MLT1A1 LTR MaLR 3 307 -58 2103 104 45 3 chr3 74384975 74385263 -153139315 - AluSg SINE Alu -10 300 1 1839 183 44 55 chr3 74385263 74385322 -153139256 + MLT1A1 LTR MaLR 307 365 0 453 326 43 30 chr3 74385515 74385745 -153138833 - MIR SINE MIR -16 246 14 378 281 56 56 chr3 74385852 74386012 -153138566 - MER5A DNA MER1_type -14 175 16 2482 179 52 58 chr3 74386556 74387060 -153137518 + MLT1D LTR MaLR 5 505 0 207 0 0 0 chr3 74387492 74387515 -153137063 + (CA)n Simple_repeat Simple_repeat 2 24 0 1692 78 0 0 chr3 74387522 74387728 -153136850 - AluSq SINE Alu -107 206 1 1366 179 0 4 chr3 74388399 74388628 -153135950 - AluJo SINE Alu -31 281 54 738 139 0 0 chr3 74388785 74388886 -153135692 + U6 snRNA snRNA 4 104 -3 25 0 0 0 chr3 74388886 74388911 -153135667 + AT_rich Low_complexity Low_complexity 1 25 0 221 259 0 80 chr3 74389069 74389181 -153135397 + L2 LINE L2 3051 3153 -160 224 189 22 100 chr3 74389396 74389486 -153135092 + L2 LINE L2 3160 3242 -71 752 225 149 83 chr3 74389486 74389909 -153134669 + MLT1J LTR MaLR 1 451 -60 1666 168 44 97 chr3 74389932 74390343 -153134235 + MLT1B LTR MaLR 1 389 -1 201 320 27 0 chr3 74390370 74390445 -153134133 + L2 LINE L2 3237 3313 0 632 278 102 86 chr3 74390799 74391231 -153133347 + MLT1J LTR MaLR 5 443 -68 2545 50 0 3 chr3 74391249 74391550 -153133028 - AluY SINE Alu -11 300 1 255 263 193 53 chr3 74391732 74391846 -153132732 - MIR SINE MIR -87 175 46 288 0 0 0 chr3 74391933 74391965 -153132613 + (CA)n Simple_repeat Simple_repeat 1 32 0 243 286 112 0 chr3 74392062 74392160 -153132418 + MLT1K LTR MaLR 151 259 -329 274 313 104 12 chr3 74392165 74392328 -153132250 + MIR SINE MIR 70 247 -15 237 273 0 0 chr3 74393966 74394032 -153130546 + L1MC4 LINE L1 6640 6705 -1337 209 132 0 57 chr3 74394032 74394085 -153130493 + (CA)n Simple_repeat Simple_repeat 2 51 0 1483 153 10 69 chr3 74394272 74394560 -153130018 - AluJb SINE Alu -11 301 31 649 312 119 33 chr3 74394797 74395226 -153129352 - L2 LINE L2 -5 3308 2843 716 235 59 0 chr3 74395366 74395536 -153129042 + MER5A DNA MER1_type 1 180 -9 409 224 31 115 chr3 74395546 74395585 -153128993 - MER5B DNA MER1_type 0 178 137 1833 131 8 4 chr3 74395585 74395852 -153128726 + AluSx SINE Alu 36 303 -9 409 224 31 115 chr3 74395852 74396004 -153128574 - MER5B DNA MER1_type -41 137 3 573 224 130 21 chr3 74396006 74396198 -153128380 - L2 LINE L2 -623 2691 2479 362 283 157 21 chr3 74396673 74396864 -153127714 - MIR SINE MIR -12 250 34 404 223 126 10 chr3 74396986 74397089 -153127489 + MIR SINE MIR 31 145 -117 823 173 0 0 chr3 74397092 74397225 -153127353 + FLAM_C SINE Alu 1 133 0 1201 200 5 0 chr3 74397394 74397599 -153126979 + MER3 DNA MER1_type 3 208 -1 207 107 0 0 chr3 74397687 74397715 -153126863 + L2 LINE L2 3226 3253 -19 189 0 0 0 chr3 74398097 74398118 -153126460 + (TC)n Simple_repeat Simple_repeat 2 22 0 1612 190 7 10 chr3 74398118 74398418 -153126160 - AluJb SINE Alu -7 305 7 45196 40 1 3 chr3 74399197 74405363 -153119215 - L1PA4 LINE L1 -3 6152 1 353 250 205 6 chr3 74405875 74406031 -153118547 + LTR33 LTR ERVL 1 187 -334 183 222 0 0 chr3 74406490 74406535 -153118043 + CT-rich Low_complexity Low_complexity 4 48 0 255 290 333 22 chr3 74406545 74406683 -153117895 + MIR SINE MIR 12 192 -70 2124 136 0 0 chr3 74406701 74407011 -153117567 + AluSx SINE Alu 1 310 -2 300 27 0 0 chr3 74407711 74407748 -153116830 + (TG)n Simple_repeat Simple_repeat 1 37 0 182 233 219 0 chr3 74408656 74408729 -153115849 - MIR3 SINE MIR -11 197 109 528 282 64 32 chr3 74409005 74409225 -153115353 - MIR SINE MIR -34 228 2 263 247 13 39 chr3 74410128 74410205 -153114373 + L2 LINE L2 3235 3309 -4 944 187 15 20 chr3 74411132 74411330 -153113248 - MER20 DNA MER1_type 0 219 23 739 265 91 13 chr3 74411804 74412034 -153112544 + Charlie8 DNA MER1_type 30 277 -2140 406 293 63 21 chr3 74412160 74412351 -153112227 - MIR3 SINE MIR -8 200 2 2539 71 0 0 chr3 74412707 74413018 -153111560 - AluY SINE Alu 0 311 1 428 289 145 31 chr3 74413113 74413431 -153111147 - L3 LINE CR1 -13 1564 1211 435 273 0 49 chr3 74413451 74413594 -153110984 - L2 LINE L2 -6 3307 3172 325 224 47 3 chr3 74413621 74413716 -153110862 - MIR SINE MIR -65 143 59 1620 176 61 7 chr3 74414070 74414366 -153110212 - AluJb SINE Alu 0 312 1 3331 145 28 18 chr3 74414554 74415099 -153109479 - L1MB5 LINE L1 -13 6161 5612 223 303 76 0 chr3 74417402 74417468 -153107110 + L2 LINE L2 3202 3272 0 1938 152 3 10 chr3 74417821 74418130 -153106448 - AluJo SINE Alu -5 307 1 800 114 8 0 chr3 74418224 74418355 -153106223 + (TTCC)n Simple_repeat Simple_repeat 1 132 0 416 311 47 97 chr3 74418377 74418698 -153105880 - L2 LINE L2 -1 3271 2967 230 336 74 20 chr3 74419153 74419302 -153105276 - MIR SINE MIR -24 238 82 503 340 45 24 chr3 74419712 74419959 -153104619 + MIR SINE MIR 11 262 0 465 257 89 0 chr3 74419985 74420086 -153104492 - MER91C DNA MER1_type -30 110 1 237 296 194 0 chr3 74420569 74420677 -153103901 + MER94 DNA DNA 5 133 -1 411 301 61 18 chr3 74421573 74421736 -153102842 - MIR SINE MIR -64 198 29 514 300 39 43 chr3 74421995 74422228 -153102350 + MIR SINE MIR 3 234 -28 181 163 0 47 chr3 74426018 74426061 -153098517 - MIR SINE MIR 0 262 222 * 188 255 0 43 chr3 74426027 74426074 -153098504 - L2 LINE L2 -13 3259 3215 827 133 44 83 chr3 74426113 74426293 -153098285 - MER20 DNA MER1_type -41 178 6 220 229 0 29 chr3 74426371 74426441 -153098137 + A-rich Low_complexity Low_complexity 4 71 0 653 259 0 17 chr3 74426862 74427036 -153097542 - MER104 DNA Tc2 -3 177 7 202 250 77 0 chr3 74429347 74429399 -153095179 - MIR SINE MIR -142 120 65 2286 74 49 0 chr3 74429776 74430061 -153094517 - AluSc SINE Alu -10 299 1 215 333 20 10 chr3 74430412 74430514 -153094064 - MIR SINE MIR -2 260 158 277 205 51 26 chr3 74430519 74430597 -153093981 + MER116 DNA Mariner 1 80 0 1935 117 13 17 chr3 74430947 74431246 -153093332 + AluSg SINE Alu 5 302 -8 269 299 19 19 chr3 74431258 74431365 -153093213 - MLT1K LTR MaLR -60 528 422 432 226 47 124 chr3 74431570 74431804 -153092774 - MLT1K LTR MaLR -369 219 4 394 279 44 7 chr3 74432057 74432193 -153092385 + MIR SINE MIR 106 246 -16 1367 182 45 28 chr3 74432309 74432600 -153091978 - AluJo SINE Alu -12 300 5 1818 162 0 26 chr3 74432608 74432911 -153091667 - AluSx SINE Alu -17 295 1 541 247 62 20 chr3 74433406 74433552 -153091026 - MLT1K LTR MaLR -114 474 323 614 272 30 30 chr3 74433579 74433781 -153090797 + MLT1H LTR MaLR 29 230 -319 291 319 11 0 chr3 74434107 74434201 -153090377 - MLT1K LTR MaLR -484 104 10 401 284 137 0 chr3 74435502 74435685 -153088893 + LTR50 LTR ERVL 2 209 -586 1783 190 3 0 chr3 74435807 74436107 -153088471 + AluJo SINE Alu 1 301 -11 336 24 0 0 chr3 74436126 74436167 -153088411 + (TG)n Simple_repeat Simple_repeat 2 42 0 254 179 18 0 chr3 74436546 74436602 -153087976 + GA-rich Low_complexity Low_complexity 2 58 0 240 297 59 0 chr3 74436677 74436778 -153087800 + MIR SINE MIR 14 120 -142 266 356 12 12 chr3 74436951 74437111 -153087467 + L3 LINE CR1 1309 1468 -109 2090 113 0 45 chr3 74437140 74437450 -153087128 - AluSc SINE Alu -13 296 1 194 370 46 0 chr3 74437483 74437591 -153086987 + MIR SINE MIR 53 165 -97 338 354 75 62 chr3 74437652 74438319 -153086259 - L2 LINE L2 -37 3235 2554 24 0 0 0 chr3 74438823 74438847 -153085731 + AT_rich Low_complexity Low_complexity 1 24 0 206 32 32 0 chr3 74439191 74439222 -153085356 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 216 97 0 0 chr3 74439558 74439589 -153084989 + (CA)n Simple_repeat Simple_repeat 2 32 0 627 227 20 13 chr3 74439730 74439880 -153084698 - Charlie8 DNA MER1_type -2236 181 31 182 225 78 127 chr3 74440005 74440077 -153084501 - MIR SINE MIR -24 238 175 2167 147 8 3 chr3 74440077 74440430 -153084148 + THE1A LTR MaLR 1 355 0 182 225 78 127 chr3 74440430 74440499 -153084079 - MIR SINE MIR -87 175 104 1996 144 89 15 chr3 74440713 74440895 -153083683 - MLT1B LTR MaLR 0 390 223 228 86 0 0 chr3 74440895 74440930 -153083648 + (TG)n Simple_repeat Simple_repeat 2 36 0 1996 144 89 15 chr3 74440930 74441121 -153083457 - MLT1B LTR MaLR -167 223 1 765 233 95 55 chr3 74441459 74441858 -153082720 + L1ME4a LINE L1 5706 6120 -1 200 352 22 0 chr3 74442631 74442722 -153081856 - L3 LINE CR1 -115 1462 1370 380 178 93 9 chr3 74443704 74443811 -153080767 + MIR SINE MIR 102 217 -45 907 246 82 0 chr3 74443941 74444148 -153080430 + MER58A DNA MER1_type 1 224 0 280 321 36 15 chr3 74444408 74444545 -153080033 + MLT1J2 LTR MaLR 1 140 -310 800 213 75 0 chr3 74444644 74444832 -153079746 + MER3 DNA MER1_type 8 209 0 389 338 97 14 chr3 74445774 74445981 -153078597 + MIR SINE MIR 17 240 -22 419 207 82 67 chr3 74446202 74446337 -153078241 - MER5B DNA MER1_type -41 137 1 618 212 20 13 chr3 74447460 74447611 -153076967 - MER5B DNA MER1_type -19 159 8 23 54 0 0 chr3 74448195 74448232 -153076346 + AT_rich Low_complexity Low_complexity 1 37 0 226 287 15 59 chr3 74448463 74448599 -153075979 - L1MC/D LINE L1 -1982 5826 5697 207 69 0 0 chr3 74449301 74449330 -153075248 + (A)n Simple_repeat Simple_repeat 1 29 0 306 279 0 0 chr3 74450255 74450341 -153074237 - MER91B DNA MER1_type -11 179 94 273 261 15 0 chr3 74450600 74450665 -153073913 - L2 LINE L2 0 3272 3207 838 191 17 28 chr3 74450862 74451040 -153073538 - MER96B DNA MER1_type? -239 178 3 204 378 11 0 chr3 74451156 74451246 -153073332 + MIR3 SINE MIR 65 155 -53 362 275 51 0 chr3 74451277 74451415 -153073163 - L2 LINE L2 -5 3308 3164 1615 191 17 0 chr3 74451594 74451892 -153072686 - AluJo SINE Alu -9 303 1 319 265 95 58 chr3 74451892 74452081 -153072497 - MIR SINE MIR -1 261 66 204 209 0 0 chr3 74452141 74452184 -153072394 - L2 LINE L2 -10 3303 3261 200 182 0 0 chr3 74452205 74452238 -153072340 + CT-rich Low_complexity Low_complexity 1 33 0 611 214 8 0 chr3 74452291 74452422 -153072156 + L1ME1 LINE L1 6026 6157 -9 234 211 13 26 chr3 74452663 74452739 -153071839 + GA-rich Low_complexity Low_complexity 1 75 0 23 0 0 0 chr3 74453042 74453065 -153071513 + GC_rich Low_complexity Low_complexity 1 23 0 236 111 22 0 chr3 74453824 74453869 -153070709 + (TA)n Simple_repeat Simple_repeat 2 47 0 281 316 41 60 chr3 74455198 74455416 -153069162 + MIR SINE MIR 49 262 0 264 270 0 0 chr3 74456260 74456323 -153068255 + MIR SINE MIR 79 141 -121 275 179 218 0 chr3 74456339 74456417 -153068161 - L2 LINE L2 -12 3301 3207 426 187 0 0 chr3 74456429 74456504 -153068074 - L2 LINE L2 -243 3070 2996 433 245 166 0 chr3 74456537 74456676 -153067902 + MER5A DNA MER1_type 28 189 0 504 270 82 25 chr3 74457363 74457559 -153067019 - MIR SINE MIR -20 242 36 606 279 118 62 chr3 74457600 74457923 -153066655 + MER102b DNA MER1_type 1 341 0 483 250 87 43 chr3 74458001 74458185 -153066393 - MIR SINE MIR -50 212 21 481 230 6 37 chr3 74458208 74458346 -153066232 - MER5A DNA MER1_type -53 136 4 942 228 70 9 chr3 74458358 74458573 -153066005 + MER58B DNA MER1_type 3 230 -111 654 207 0 0 chr3 74458637 74458748 -153065830 + MER58B DNA MER1_type 231 341 0 1622 192 43 6 chr3 74459783 74460111 -153064467 + MER58B DNA MER1_type 1 340 -1 270 167 0 0 chr3 74460357 74460427 -153064151 - Alu SINE Alu 0 305 236 371 110 0 41 chr3 74460464 74460537 -153064041 + L1MA8 LINE L1 6221 6290 -1 547 231 14 7 chr3 74460922 74461069 -153063509 + MER53 DNA DNA 1 148 -41 1284 190 4 0 chr3 74461080 74461306 -153063272 - AluJb SINE Alu -30 282 56 336 118 0 0 chr3 74461306 74461357 -153063221 + MER53 DNA DNA 134 184 -5 637 227 28 34 chr3 74461554 74461730 -153062848 - MER5B DNA MER1_type 0 178 4 2246 156 11 3 chr3 74461743 74462103 -153062475 - MER47A DNA MER2_type -3 363 1 311 165 143 11 chr3 74462169 74462260 -153062318 - MER5A DNA MER1_type -84 105 3 216 248 198 23 chr3 74463056 74463187 -153061391 - MIR SINE MIR -68 140 24 240 224 0 35 chr3 74463833 74463891 -153060687 + MIR SINE MIR 88 143 -65 1027 114 95 57 chr3 74464290 74464501 -153060077 + MER20 DNA MER1_type 1 219 0 22 0 0 0 chr3 74464668 74464690 -153059888 + AT_rich Low_complexity Low_complexity 1 22 0 232 344 31 0 chr3 74465031 74465127 -153059451 - L1ME LINE L1 -481 5640 5542 486 326 68 4 chr3 74465688 74465924 -153058654 + MIR SINE MIR 5 255 -7 1955 139 79 48 chr3 74466032 74466266 -153058312 - THE1B LTR MaLR 0 364 113 2104 120 0 0 chr3 74466266 74466563 -153058015 + AluSg SINE Alu 11 307 0 1955 139 79 48 chr3 74466563 74466680 -153057898 - THE1B LTR MaLR -251 113 1 11547 94 15 3 chr3 74466681 74468241 -153056337 - THE1B-int LTR MaLR -1 1579 1 1906 141 72 69 chr3 74468241 74468293 -153056285 - THE1B LTR MaLR 0 364 314 1957 150 10 0 chr3 74468293 74468586 -153055992 - AluSx SINE Alu -10 302 7 1906 141 72 69 chr3 74468586 74468896 -153055682 - THE1B LTR MaLR -50 314 1 485 309 129 18 chr3 74469494 74469772 -153054806 + MER102b DNA MER1_type 33 341 0 351 285 112 28 chr3 74469932 74470146 -153054432 - MIR SINE MIR -15 247 16 376 96 0 0 chr3 74470844 74470896 -153053682 - MADE1 DNA Mariner -28 52 1 194 287 148 77 chr3 74471403 74471524 -153053054 - MIR SINE MIR -17 245 134 16277 117 18 4 chr3 74471524 74471723 -153052855 - Tigger1 DNA MER2_type 0 2418 2223 1788 150 13 42 chr3 74471723 74472036 -153052542 + AluJb SINE Alu 1 304 -8 16277 117 18 4 chr3 74472036 74474220 -153050358 - Tigger1 DNA MER2_type -195 2223 1 194 287 148 77 chr3 74474220 74474307 -153050271 - MIR SINE MIR -128 134 22 603 198 173 6 chr3 74474350 74474512 -153050066 - MER5A DNA MER1_type 0 189 1 772 230 51 0 chr3 74475042 74475220 -153049358 + L1PB4 LINE L1 5968 6154 -2 308 269 184 92 chr3 74475374 74475797 -153048781 + L2 LINE L2 2852 3313 0 285 231 64 39 chr3 74577359 74577437 -152947141 - L2 LINE L2 -17 3255 3176 668 98 10 0 chr3 74577725 74577827 -152946751 + (TC)n Simple_repeat Simple_repeat 1 103 0 247 158 0 0 chr3 74577827 74577865 -152946713 + polypyrimidine Low_complexity Low_complexity 3 40 0 1895 147 27 7 chr3 74579995 74580294 -152944284 - AluJb SINE Alu -7 305 1 728 205 163 32 chr3 74580371 74580561 -152944017 - MER20 DNA MER1_type -2 217 3 265 272 87 19 chr3 74581111 74581214 -152943364 - MIR SINE MIR 0 262 153 309 269 77 39 chr3 74582098 74582202 -152942376 - MER5A DNA MER1_type -3 186 79 181 308 33 44 chr3 74582987 74583078 -152941500 + L3 LINE CR1 1399 1488 -89 249 57 0 0 chr3 74584696 74584731 -152939847 + (T)n Simple_repeat Simple_repeat 1 35 0 323 260 112 14 chr3 74585742 74586019 -152938559 - L1ME4a LINE L1 -16 6105 5802 739 271 136 49 chr3 74586184 74587227 -152937351 - L1ME3A LINE L1 -10 6160 5024 306 276 29 67 chr3 74587339 74587444 -152937134 - L1ME3A LINE L1 -1161 4985 4885 1076 252 149 26 chr3 74587604 74588327 -152936251 - L1ME3A LINE L1 -1460 4686 3875 457 244 79 96 chr3 74588330 74588838 -152935740 - MLT1H1 LTR MaLR 0 555 80 1889 167 30 19 chr3 74589108 74589479 -152935099 + THE1C LTR MaLR 1 375 0 802 259 96 38 chr3 74590083 74590579 -152933999 + MLT1G LTR MaLR 1 531 -24 2119 102 0 3 chr3 74590650 74590945 -152933633 - AluY SINE Alu -17 294 1 367 140 0 0 chr3 74590945 74591002 -152933576 - LTR8 LTR ERV1 -114 577 521 2470 71 0 3 chr3 74591012 74591321 -152933257 - AluY SINE Alu -3 308 1 437 305 99 7 chr3 74591359 74591510 -152933068 - MIR SINE MIR -71 191 27 808 204 11 6 chr3 74592023 74592199 -152932379 + MER5B DNA MER1_type 2 178 0 229 297 76 65 chr3 74592384 74592569 -152932009 - L2 LINE L2 -916 2398 2212 488 345 16 67 chr3 74592928 74593183 -152931395 + L2 LINE L2 2804 3045 -268 426 127 0 0 chr3 74593365 74593436 -152931142 + (TGAG)n Simple_repeat Simple_repeat 1 71 0 440 217 17 23 chr3 74593547 74593644 -152930934 - MER5B DNA MER1_type 0 178 89 303 240 13 0 chr3 74594596 74594671 -152929907 - MER5A DNA MER1_type -80 109 34 409 288 33 39 chr3 74594681 74594834 -152929744 - MER5A DNA MER1_type -4 185 34 * 457 280 27 13 chr3 74594702 74594852 -152929726 + MER5A DNA MER1_type 35 186 -3 286 322 69 40 chr3 74594904 74595078 -152929500 - MIR3 SINE MIR 0 208 30 366 192 142 33 chr3 74595108 74595228 -152929350 + L2 LINE L2 3170 3302 -11 53 30 0 0 chr3 74595331 74595398 -152929180 + AT_rich Low_complexity Low_complexity 1 67 0 25302 30 1 0 chr3 74595398 74599229 -152925349 - L1PA3 LINE L1 0 6155 2326 548 301 59 42 chr3 74599297 74599536 -152925042 + MIR SINE MIR 3 245 -17 2059 125 4 0 chr3 74599573 74599854 -152924724 + AluSx SINE Alu 1 282 -30 444 37 0 0 chr3 74599857 74599911 -152924667 + (TAA)n Simple_repeat Simple_repeat 2 55 0 762 271 100 9 chr3 74600598 74600919 -152923659 - MLT1K LTR MaLR -27 561 212 380 286 233 5 chr3 74601844 74602050 -152922528 - MIR SINE MIR 0 262 10 33 0 0 0 chr3 74602101 74602134 -152922444 + AT_rich Low_complexity Low_complexity 1 33 0 769 256 58 37 chr3 74602224 74602466 -152922112 - MIR SINE MIR -3 259 13 210 71 0 0 chr3 74602586 74602614 -152921964 + (T)n Simple_repeat Simple_repeat 1 28 0 291 214 107 0 chr3 74602749 74602833 -152921745 - L2 LINE L2 -5 3267 3175 347 248 138 62 chr3 74603104 74603394 -152921184 - MLT1L LTR MaLR -136 479 168 551 259 0 0 chr3 74603858 74603974 -152920604 - MER45A DNA AcHobo -5 173 58 1626 178 3 17 chr3 74604225 74604517 -152920061 + AluJo SINE Alu 1 288 -24 997 198 35 5 chr3 74606213 74606415 -152918163 - MER3 DNA MER1_type -1 208 1 228 293 0 0 chr3 74606456 74606514 -152918064 - L2 LINE L2 -1 3271 3214 671 226 110 6 chr3 74606524 74606688 -152917890 + MIR SINE MIR 13 193 -69 276 253 0 0 chr3 74606719 74606810 -152917768 + (TA)n Simple_repeat Simple_repeat 1 91 0 315 294 47 111 chr3 74606890 74607169 -152917409 - L2 LINE L2 -78 3194 2934 757 346 141 5 chr3 74607304 74607737 -152916841 - L2 LINE L2 -618 2696 2205 709 237 61 15 chr3 74607755 74607953 -152916625 + L1M4b LINE L1 11 217 -6642 1327 328 77 12 chr3 74607974 74608544 -152916034 + L1M4b LINE L1 326 932 -5927 2037 243 57 48 chr3 74609087 74610289 -152914289 + L1M4b LINE L1 1187 2394 -4565 328 249 110 94 chr3 74610304 74610613 -152913965 + L1MB5 LINE L1 289 602 -6044 1238 251 31 22 chr3 74610778 74611193 -152913385 + L1MB5 LINE L1 817 1235 -5307 3572 215 35 28 chr3 74611210 74612241 -152912337 + L1MB5 LINE L1 4777 5834 -838 1562 198 7 24 chr3 74612241 74612539 -152912039 + AluJb SINE Alu 1 293 -19 3572 215 35 28 chr3 74612539 74613225 -152911353 + L1MB5 LINE L1 5834 6513 -159 633 197 16 8 chr3 74613269 74613391 -152911187 - FLAM_C SINE Alu -17 126 4 2230 92 0 10 chr3 74613400 74613703 -152910875 - AluY SINE Alu -1 310 11 195 244 90 39 chr3 74613741 74613819 -152910759 - MIR SINE MIR -93 115 34 360 95 0 108 chr3 74614137 74614211 -152910367 + L1PB4 LINE L1 5728 5782 -374 180 0 0 0 chr3 74614250 74614270 -152910308 + (TA)n Simple_repeat Simple_repeat 1 20 0 435 19 0 0 chr3 74614465 74614517 -152910061 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 1553 213 35 11 chr3 74614518 74614884 -152909694 + L1PB4 LINE L1 5782 6156 0 550 280 101 11 chr3 74615091 74615280 -152909298 - MIR SINE MIR -1 261 56 678 256 62 101 chr3 74615910 74616347 -152908231 + LTR16A LTR ERVL 19 438 -12 783 290 103 3 chr3 74616447 74616747 -152907831 + MLT1J2 LTR MaLR 1 330 -120 388 301 52 36 chr3 74616839 74617067 -152907511 - L1ME LINE L1 -419 5745 5510 240 293 93 13 chr3 74617206 74617281 -152907297 - MIR SINE MIR -164 98 18 5502 61 0 0 chr3 74617681 74618370 -152906208 + L1PA5 LINE L1 5465 6153 -1 701 307 6 0 chr3 74619149 74619312 -152905266 + AluSx SINE Alu 4 167 -145 710 341 83 37 chr3 74619426 74619737 -152904841 + L2 LINE L2 2498 2793 -479 835 235 27 16 chr3 74619737 74619924 -152904654 + MER5A DNA MER1_type 1 189 0 710 341 83 37 chr3 74619924 74620343 -152904235 + L2 LINE L2 2793 3259 -13 180 0 0 0 chr3 74620343 74620363 -152904215 + (TGAA)n Simple_repeat Simple_repeat 1 20 0 357 252 110 24 chr3 74620428 74620555 -152904023 + MIR SINE MIR 119 256 -6 1965 117 34 99 chr3 74621269 74621654 -152902924 - THE1B LTR MaLR -2 362 3 1775 149 29 18 chr3 74621655 74621936 -152902642 + AluJb SINE Alu 19 302 -10 252 0 0 0 chr3 74622753 74622781 -152901797 + (T)n Simple_repeat Simple_repeat 1 28 0 519 273 7 14 chr3 74622972 74623115 -152901463 + MIR SINE MIR 13 154 -108 324 265 8 8 chr3 74623180 74623297 -152901281 - MER103 DNA DNA -6 160 44 229 257 68 40 chr3 74623355 74623429 -152901149 + MIR SINE MIR 161 236 -26 386 340 43 27 chr3 74623601 74623789 -152900789 - MIR SINE MIR -13 249 59 407 329 120 54 chr3 74624028 74624344 -152900234 + L2 LINE L2 2936 3272 0 234 0 0 0 chr3 74625005 74625031 -152899547 + (T)n Simple_repeat Simple_repeat 1 26 0 317 226 0 43 chr3 74625130 74625223 -152899355 - MIR3 SINE MIR -8 200 112 278 320 145 64 chr3 74625558 74625964 -152898614 + L2 LINE L2 2831 3269 -3 303 240 256 8 chr3 74626362 74626483 -152898095 - L2 LINE L2 0 3313 3163 282 237 0 53 chr3 74626529 74626605 -152897973 + MIR SINE MIR 181 252 -10 399 330 104 6 chr3 74626686 74626868 -152897710 - MIR SINE MIR 0 262 63 194 269 35 92 chr3 74627276 74627417 -152897161 + MIR SINE MIR 64 196 -66 839 187 33 50 chr3 74627450 74627632 -152896946 + MER20 DNA MER1_type 41 219 0 183 80 0 0 chr3 74628418 74628443 -152896135 + (A)n Simple_repeat Simple_repeat 1 25 0 234 286 106 35 chr3 74629863 74629986 -152894592 + MIR SINE MIR 7 141 -67 526 306 66 6 chr3 74630492 74630675 -152893903 + MIR SINE MIR 52 245 -17 1854 187 14 0 chr3 74630695 74631064 -152893514 - L1PB4 LINE L1 0 6156 5783 810 295 13 16 chr3 74632939 74633254 -152891324 - L1ME2 LINE L1 -9 6224 5911 1569 221 70 11 chr3 74633288 74633859 -152890719 - L1ME2 LINE L1 -485 5750 5155 481 258 20 7 chr3 74633876 74634027 -152890551 - L1ME2 LINE L1 -1108 5107 4955 881 242 54 39 chr3 74634036 74634478 -152890100 - L1ME2 LINE L1 -5269 1127 679 3347 189 55 6 chr3 74634525 74635217 -152889361 - MER44D DNA MER2_type -7 598 1 682 321 40 55 chr3 74635218 74635477 -152889101 - L1ME2 LINE L1 -5749 647 386 1920 144 3 44 chr3 74635477 74635651 -152888927 - AluSx SINE Alu -5 307 150 2374 105 0 0 chr3 74635651 74635955 -152888623 - AluSg SINE Alu -6 304 1 1920 144 3 44 chr3 74635955 74636100 -152888478 - AluSx SINE Alu -162 150 1 682 321 40 55 chr3 74636100 74636389 -152888189 - L1ME2 LINE L1 -6010 386 107 335 296 44 6 chr3 74636624 74636783 -152887795 + MER113 DNA MER1_type? 4 168 -353 352 308 39 15 chr3 74637003 74637133 -152887445 - MIR3 SINE MIR -3 205 73 * 495 296 8 15 chr3 74637128 74637260 -152887318 - L2 LINE L2 -1 3312 3182 346 368 54 25 chr3 74638141 74638345 -152886233 - MIR SINE MIR -4 258 49 24 0 0 0 chr3 74638399 74638423 -152886155 + AT_rich Low_complexity Low_complexity 1 24 0 183 336 121 9 chr3 74638463 74638579 -152885999 - MIR3 SINE MIR -68 140 12 276 350 121 38 chr3 74640152 74640724 -152883854 - L2 LINE L2 0 3313 2622 290 324 59 10 chr3 74641464 74641566 -152883012 - L2 LINE L2 -2009 1305 1199 192 218 0 55 chr3 74641660 74641715 -152882863 - L2 LINE L2 -1 3312 3261 234 91 0 0 chr3 74642206 74642239 -152882339 + (GA)n Simple_repeat Simple_repeat 2 34 0 212 162 0 0 chr3 74642241 74642278 -152882300 + (TG)n Simple_repeat Simple_repeat 1 37 0 829 209 99 30 chr3 74642645 74642846 -152881732 + MER20 DNA MER1_type 3 217 -2 1628 151 68 4 chr3 74642923 74643188 -152881390 + AluJb SINE Alu 1 282 -30 26 0 0 0 chr3 74643651 74643677 -152880901 + GC_rich Low_complexity Low_complexity 1 26 0 1137 102 19 48 chr3 74644143 74644349 -152880229 - AluSg/x SINE Alu -21 291 92 407 211 41 16 chr3 74644350 74644473 -152880105 + L1MB5 LINE L1 6049 6174 0 1999 130 20 7 chr3 74644505 74644806 -152879772 + AluSx SINE Alu 1 305 -7 937 279 46 42 chr3 74644904 74645650 -152878928 + L1MEc LINE L1 1736 2443 -3772 207 321 62 9 chr3 74645652 74645764 -152878814 - L2 LINE L2 -1121 2193 2076 2227 87 3 3 chr3 74645872 74646161 -152878417 - AluY SINE Alu -12 299 11 195 244 90 39 chr3 74646198 74646276 -152878302 - MIR SINE MIR -93 115 34 253 347 11 32 chr3 74646442 74646537 -152878041 + MIR SINE MIR 54 146 -116 2244 109 7 0 chr3 74647866 74648170 -152876408 - AluSg1 SINE Alu -3 306 1 31 0 0 0 chr3 74648356 74648387 -152876191 + AT_rich Low_complexity Low_complexity 1 31 0 292 264 11 33 chr3 74649383 74649474 -152875104 - MIR3 SINE MIR -39 169 81 237 137 118 0 chr3 74649590 74649641 -152874937 - L2 LINE L2 0 3313 3257 276 109 0 0 chr3 74652688 74652734 -152871844 + MADE1 DNA Mariner 1 46 -34 259 237 0 0 chr3 74652939 74652998 -152871580 - L1ME3A LINE L1 -58 6112 6054 537 187 143 53 chr3 74653002 74653211 -152871367 + MER5C DNA MER1_type 97 324 0 313 255 21 43 chr3 74654115 74654209 -152870369 - MIR3 SINE MIR -28 180 89 1198 270 58 6 chr3 74654279 74654745 -152869833 - L1ME3A LINE L1 -17 6153 5664 28 48 0 0 chr3 74655035 74655077 -152869501 + AT_rich Low_complexity Low_complexity 1 42 0 256 223 165 10 chr3 74655115 74655218 -152869360 + L2 LINE L2 3189 3307 -6 252 0 0 0 chr3 74655322 74655350 -152869228 + (TG)n Simple_repeat Simple_repeat 2 29 0 485 291 167 8 chr3 74655376 74655806 -152868772 - L1MC4a LINE L1 -373 5748 5375 535 333 21 25 chr3 74656265 74656508 -152868070 + MIR SINE MIR 18 259 -3 250 301 23 45 chr3 74657421 74657554 -152867024 - L2 LINE L2 -25 3288 3159 423 307 34 34 chr3 74658019 74658224 -152866354 + MIR SINE MIR 20 224 -38 473 272 76 104 chr3 74659324 74659420 -152865158 + MIR SINE MIR 20 117 -145 1621 210 0 0 chr3 74659420 74659710 -152864868 - AluJo SINE Alu -22 290 1 473 272 76 104 chr3 74659710 74659863 -152864715 + MIR SINE MIR 117 262 0 231 261 35 158 chr3 74659932 74660108 -152864470 + L2 LINE L2 3002 3116 -197 2526 75 3 0 chr3 74660108 74660414 -152864164 - AluSp SINE Alu -6 307 1 231 261 35 158 chr3 74660414 74660585 -152863993 + L2 LINE L2 3116 3306 -7 360 332 67 27 chr3 74660595 74660818 -152863760 + MIR SINE MIR 29 260 -2 190 298 193 0 chr3 74661440 74661497 -152863081 + MIR SINE MIR 48 115 -147 1668 163 3 24 chr3 74661516 74661804 -152862774 - AluJo SINE Alu -30 282 1 215 238 206 0 chr3 74661815 74661878 -152862700 - MIR SINE MIR -1 261 186 407 266 153 0 chr3 74661885 74662009 -152862569 - L2 LINE L2 -3 3310 3168 276 368 23 23 chr3 74662253 74662386 -152862192 - MIR3 SINE MIR -63 145 13 1527 168 35 52 chr3 74662464 74662750 -152861828 + AluJo SINE Alu 1 281 -31 199 233 27 68 chr3 74662762 74662835 -152861743 - MER5B DNA MER1_type -78 100 31 245 282 39 13 chr3 74662929 74663012 -152861566 + MIR SINE MIR 48 132 -76 423 282 13 64 chr3 74663029 74663185 -152861393 + MER5B DNA MER1_type 1 148 -30 239 224 129 35 chr3 74663153 74663238 -152861340 + L3 LINE CR1 1483 1575 -2 * 313 236 0 0 chr3 74663843 74663915 -152860663 + MER103 DNA DNA 47 118 -48 519 305 33 0 chr3 74664039 74664190 -152860388 - MIR SINE MIR -42 220 65 539 296 70 30 chr3 74664197 74664396 -152860182 + MIR SINE MIR 28 234 -28 203 175 18 70 chr3 74664687 74664744 -152859834 + MER5B DNA MER1_type 17 70 -108 * 384 298 99 7 chr3 74664695 74664846 -152859732 - MER5A DNA MER1_type -24 165 1 247 241 17 17 chr3 74665062 74665120 -152859458 + MIR SINE MIR 12 69 -193 532 333 5 14 chr3 74665657 74665864 -152858714 + MIR SINE MIR 57 261 -1 606 289 25 21 chr3 74665870 74666069 -152858509 + MIR SINE MIR 59 256 -6 263 358 62 0 chr3 74666402 74666483 -152858095 - L2 LINE L2 -46 3226 3141 527 307 135 8 chr3 74666534 74666778 -152857800 - L2 LINE L2 -373 2941 2667 1173 219 100 81 chr3 74667000 74667520 -152857058 + MLT1E LTR MaLR 34 589 -4 491 272 25 19 chr3 74668249 74668411 -152856167 + MIR SINE MIR 68 230 -32 369 330 53 43 chr3 74669113 74669395 -152855183 + L2 LINE L2 2967 3251 -62 * 626 236 51 34 chr3 74669376 74669534 -152855044 - MIR SINE MIR -69 193 30 1233 157 41 99 chr3 74669534 74669878 -152854700 + MER33 DNA MER1_type 1 324 0 626 236 51 34 chr3 74669878 74669897 -152854681 - MIR SINE MIR -232 30 13 431 286 36 56 chr3 74670132 74670384 -152854194 - MLT1K LTR MaLR -27 561 315 1471 165 9 92 chr3 74670892 74671207 -152853371 + AluJo SINE Alu 1 289 -23 250 232 62 27 chr3 74673318 74673430 -152851148 + L2 LINE L2 2919 3034 -238 277 215 0 15 chr3 74673724 74673789 -152850789 + L2 LINE L2 3250 3313 0 1023 242 84 16 chr3 74674060 74674382 -152850196 + MLT1F LTR MaLR 7 350 -192 2387 83 0 3 chr3 74674901 74675202 -152849376 + AluY SINE Alu 1 300 -11 2920 117 39 35 chr3 74675650 74676195 -152848383 - LTR10A LTR ERV1 -62 547 1 453 319 59 12 chr3 74676401 74676570 -152848008 - MIR SINE MIR -77 185 9 357 332 11 32 chr3 74677654 74677844 -152846734 + MER117 DNA MER1_type 7 192 -5 260 301 97 10 chr3 74678234 74678337 -152846241 + MIR SINE MIR 78 189 -73 322 172 336 45 chr3 74678580 74678714 -152845864 + MER53 DNA DNA 1 173 -16 2318 76 0 48 chr3 74678769 74679084 -152845494 - AluY SINE Alu -11 300 1 250 265 24 24 chr3 74679087 74679170 -152845408 + MIR SINE MIR 175 257 -5 880 277 12 0 chr3 74679197 74679439 -152845139 + MIR SINE MIR 16 260 -2 382 259 107 11 chr3 74679556 74679696 -152844882 - MIR SINE MIR -62 146 15 22 88 0 0 chr3 74679787 74679844 -152844734 + AT_rich Low_complexity Low_complexity 1 57 0 205 336 60 15 chr3 74679893 74680027 -152844551 - MIR SINE MIR -100 162 23 2018 110 65 0 chr3 74680402 74680692 -152843886 + AluSp SINE Alu 1 309 -4 27 87 0 0 chr3 74681804 74681873 -152842705 + AT_rich Low_complexity Low_complexity 1 69 0 577 256 68 11 chr3 74682075 74682255 -152842323 - MIR SINE MIR -40 222 38 594 321 113 16 chr3 74683550 74683914 -152840664 + L2 LINE L2 2827 3225 -88 903 280 54 13 chr3 74684464 74684778 -152839800 + LTR16C LTR ERVL 146 472 -19 183 80 0 0 chr3 74684856 74684881 -152839697 + (T)n Simple_repeat Simple_repeat 1 25 0 274 192 0 0 chr3 74684884 74684936 -152839642 + MER103 DNA DNA 63 114 -52 618 200 47 40 chr3 74685784 74685934 -152838644 + MIR SINE MIR 110 260 -2 224 304 29 14 chr3 74685959 74686028 -152838550 - MIR SINE MIR -188 74 5 23 0 0 0 chr3 74686199 74686222 -152838356 + AT_rich Low_complexity Low_complexity 1 23 0 353 273 75 43 chr3 74688624 74688811 -152835767 + MER117 DNA MER1_type 1 193 -4 1075 259 18 26 chr3 74688911 74689254 -152835324 - MER93a LTR ERV1 0 402 63 236 307 246 0 chr3 74689356 74689535 -152835043 + MIR SINE MIR 40 262 0 264 378 15 7 chr3 74690154 74690289 -152834289 - MIR SINE MIR -16 246 111 380 396 65 9 chr3 74691410 74691640 -152832938 + L1MDa LINE L1 15 257 -6283 376 297 139 25 chr3 74691902 74692104 -152832474 - MIR SINE MIR -13 249 25 234 229 0 16 chr3 74693019 74693080 -152831498 - MER112 DNA MER1_type -193 67 8 290 301 105 35 chr3 74693351 74693494 -152831084 - MIR SINE MIR -74 188 36 569 305 151 55 chr3 74693688 74694347 -152830231 + L2 LINE L2 2535 3237 -35 357 284 114 35 chr3 74695012 74695213 -152829365 - MIR SINE MIR -44 218 2 185 361 36 0 chr3 74695271 74695354 -152829224 - L2 LINE L2 -50 3222 3137 612 282 29 37 chr3 74695384 74695625 -152828953 - MIR SINE MIR -17 245 7 181 255 0 59 chr3 74695683 74695734 -152828844 - L2 LINE L2 -188 3084 3037 431 357 56 5 chr3 74695824 74696020 -152828558 + L3 LINE CR1 1328 1533 -44 436 294 7 15 chr3 74696033 74696169 -152828409 - MER5A DNA MER1_type -15 174 40 2069 141 33 28 chr3 74696178 74696540 -152828038 - THE1B LTR MaLR 0 364 1 231 238 0 0 chr3 74696573 74696615 -152827963 + L3b LINE CR1 1531 1572 -11 2185 101 37 0 chr3 74696677 74696973 -152827605 - AluSx SINE Alu -5 307 1 926 213 41 30 chr3 74696987 74697184 -152827394 - MER58A DNA MER1_type -25 199 1 450 250 69 0 chr3 74697192 74697336 -152827242 - MER103 DNA DNA -12 154 1 730 254 18 45 chr3 74697765 74697985 -152826593 + MER20 DNA MER1_type 6 219 0 226 323 50 10 chr3 74698341 74698440 -152826138 + MIR SINE MIR 61 163 -99 282 311 155 0 chr3 74699716 74699864 -152824714 + MIR SINE MIR 92 262 0 182 306 32 32 chr3 74701617 74701679 -152822899 - L2 LINE L2 -328 2985 2924 201 39 0 0 chr3 74701938 74701964 -152822614 + (CA)n Simple_repeat Simple_repeat 2 27 0 * 243 0 0 0 chr3 74701963 74701990 -152822588 + (TC)n Simple_repeat Simple_repeat 1 27 0 344 278 52 23 chr3 74703056 74703229 -152821349 - L1MC5 LINE L1 -61 7900 7723 228 86 0 0 chr3 74703947 74703982 -152820596 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 2180 65 0 14 chr3 74703984 74704261 -152820317 - AluY SINE Alu -38 273 1 861 159 5 91 chr3 74704317 74704525 -152820053 - MER20 DNA MER1_type -1 218 29 380 286 5 92 chr3 74704857 74705063 -152819515 - MIR SINE MIR 0 262 75 304 298 51 25 chr3 74705377 74705535 -152819043 + L1ME4a LINE L1 5947 6108 -13 743 348 112 31 chr3 74705629 74706083 -152818495 + L3 LINE CR1 57 547 -1030 334 359 130 5 chr3 74706082 74706266 -152818312 - MIR SINE MIR 0 262 56 * 318 316 129 7 chr3 74706299 74706438 -152818140 + L3 LINE CR1 562 717 -860 190 161 18 36 chr3 74706884 74706940 -152817638 + GA-rich Low_complexity Low_complexity 2 56 0 316 233 47 23 chr3 74707573 74707659 -152816919 + L1ME4a LINE L1 5996 6083 -38 526 335 59 5 chr3 74707669 74707872 -152816706 - MIR SINE MIR 0 262 49 436 240 42 0 chr3 74708790 74708886 -152815692 - L2 LINE L2 0 3313 3214 211 362 48 87 chr3 74708904 74709048 -152815530 + L2 LINE L2 2965 3100 -172 864 114 0 0 chr3 74709048 74709179 -152815399 + (TA)n Simple_repeat Simple_repeat 2 132 0 211 362 48 87 chr3 74709179 74709241 -152815337 + L2 LINE L2 3100 3163 -109 * 470 295 34 7 chr3 74709230 74709379 -152815199 + MIR SINE MIR 29 181 -81 1026 229 154 28 chr3 74709379 74709807 -152814771 + L1ME1 LINE L1 5641 6122 -44 338 264 51 46 chr3 74710376 74710573 -152814005 + MLT1J LTR MaLR 314 511 0 474 174 74 0 chr3 74710645 74710766 -152813812 + L1MA4 LINE L1 6165 6294 -6 562 275 64 0 chr3 74712375 74712546 -152812032 - MIR SINE MIR -11 251 70 372 268 83 32 chr3 74714234 74714391 -152810187 + LTR33 LTR ERVL 50 214 -307 234 204 0 20 chr3 74714691 74714740 -152809838 - L2 LINE L2 -16 3256 3209 2266 155 62 17 chr3 74715111 74715582 -152808996 - L1MB7 LINE L1 -14 6170 5679 434 322 7 7 chr3 74715658 74715810 -152808768 + MLT1K LTR MaLR 98 249 -339 207 167 0 0 chr3 74716501 74716537 -152808041 + (TGG)n Simple_repeat Simple_repeat 2 37 0 637 291 153 5 chr3 74716892 74717115 -152807463 - MIR SINE MIR 0 262 7 2423 84 3 0 chr3 74717215 74717526 -152807052 + AluSp SINE Alu 2 313 0 768 197 31 79 chr3 74717793 74718083 -152806495 - LTR37B LTR ERV1 0 468 193 286 247 55 60 chr3 74718120 74718203 -152806375 - LTR37B LTR ERV1 -270 198 116 1103 183 15 0 chr3 74718203 74718405 -152806173 + MER3 DNA MER1_type 5 209 0 286 247 55 60 chr3 74718405 74718503 -152806075 - LTR37B LTR ERV1 -352 116 18 1945 143 0 52 chr3 74719107 74719435 -152805143 + AluJo SINE Alu 1 311 -1 568 271 16 16 chr3 74720329 74720517 -152804061 - MIR SINE MIR -4 258 71 279 291 129 2 chr3 74720574 74720694 -152803884 + MIR SINE MIR 41 174 -61 346 179 0 0 chr3 74721294 74721361 -152803217 - LTR37B LTR ERV1 -396 72 6 2421 57 0 7 chr3 74721491 74721787 -152802791 - AluY SINE Alu -17 294 1 4556 66 17 0 chr3 74722761 74723354 -152801224 + L1PA5 LINE L1 5545 6147 -7 30 27 0 0 chr3 74723399 74723436 -152801142 + AT_rich Low_complexity Low_complexity 1 37 0 225 0 0 0 chr3 74723443 74723468 -152801110 + (A)n Simple_repeat Simple_repeat 1 25 0 288 272 9 44 chr3 74725093 74725207 -152799371 + CT-rich Low_complexity Low_complexity 6 115 0 215 211 0 13 chr3 74725223 74725299 -152799279 + CT-rich Low_complexity Low_complexity 4 78 0 218 366 0 0 chr3 74726213 74726295 -152798283 - MIR3 SINE MIR -3 205 124 1292 207 108 71 chr3 74727336 74727475 -152797103 + MLT1F1 LTR MaLR 2 135 -432 1603 138 64 115 chr3 74727475 74727926 -152796652 + MSTA LTR MaLR 1 428 0 1292 207 108 71 chr3 74727926 74728336 -152796242 + MLT1F1 LTR MaLR 135 567 0 2366 79 17 94 chr3 74728397 74728801 -152795777 + THE1C LTR MaLR 1 373 -2 1885 104 36 0 chr3 74729035 74729315 -152795263 - L1PB1 LINE L1 -5 6146 5857 681 162 0 0 chr3 74729315 74729420 -152795158 + AluSg/x SINE Alu 193 297 -13 633 131 4 91 chr3 74729423 74729648 -152794930 - L1MA6 LINE L1 -363 5788 5684 28 0 0 0 chr3 74730018 74730046 -152794532 + AT_rich Low_complexity Low_complexity 1 28 0 334 297 148 44 chr3 74730477 74730706 -152793872 + MIR SINE MIR 9 261 -1 853 191 71 48 chr3 74731760 74731970 -152792608 + MER20 DNA MER1_type 1 215 -4 546 164 329 0 chr3 74731988 74732140 -152792438 + MER3 DNA MER1_type 2 203 -6 2272 97 7 3 chr3 74732672 74732971 -152791607 - AluSc SINE Alu -9 300 1 600 300 108 37 chr3 74733401 74733698 -152790880 + L2 LINE L2 2996 3313 0 447 279 64 29 chr3 74734244 74734448 -152790130 + MIR SINE MIR 48 258 -4 1106 251 132 25 chr3 74734449 74734971 -152789607 + MLT1G LTR MaLR 1 578 -12 278 298 94 79 chr3 74735161 74735426 -152789152 + L2 LINE L2 2948 3216 -56 499 274 114 32 chr3 74735462 74735681 -152788897 + MIR SINE MIR 13 249 -13 189 139 0 0 chr3 74737144 74737187 -152787391 + (TA)n Simple_repeat Simple_repeat 1 43 0 251 260 117 0 chr3 74737264 74737341 -152787237 + L2 LINE L2 3228 3313 0 613 250 37 6 chr3 74737363 74737527 -152787051 + MER117 DNA MER1_type 22 190 -7 246 62 0 0 chr3 74739558 74739590 -152784988 + (T)n Simple_repeat Simple_repeat 1 32 0 265 196 18 0 chr3 74739604 74739660 -152784918 + MLT1J LTR MaLR 446 502 -9 848 188 47 6 chr3 74739843 74740013 -152784565 - MER5A DNA MER1_type -8 181 5 1126 211 48 3 chr3 74740028 74740317 -152784261 - MER5C DNA MER1_type -6 318 17 462 276 48 92 chr3 74740659 74740931 -152783647 - MIR SINE MIR 0 262 3 252 276 52 43 chr3 74740995 74741111 -152783467 + MIR SINE MIR 23 139 -69 309 212 59 0 chr3 74741166 74741251 -152783327 - MER103 DNA DNA 0 166 77 978 221 270 21 chr3 74741256 74741741 -152782837 + MER39 LTR ERV1 6 611 -96 329 194 69 3 chr3 74741766 74741884 -152782694 + MER39 LTR ERV1 434 673 -7 226 289 26 0 chr3 74741896 74741972 -152782606 - MER103 DNA DNA -86 80 3 425 202 79 35 chr3 74742200 74742314 -152782264 - MIR SINE MIR -36 226 108 25 65 0 0 chr3 74743093 74743139 -152781439 + AT_rich Low_complexity Low_complexity 1 46 0 1724 178 0 23 chr3 74743244 74743553 -152781025 + AluJb SINE Alu 1 302 -10 423 304 107 26 chr3 74744234 74744504 -152780074 + L2 LINE L2 2959 3250 -63 233 213 32 53 chr3 74745303 74745397 -152779181 - MER103 DNA DNA -70 96 5 686 241 112 0 chr3 74745397 74745567 -152779011 + MER5A DNA MER1_type 1 189 0 479 194 0 0 chr3 74745640 74745733 -152778845 - MER5A DNA MER1_type -88 101 9 430 240 101 45 chr3 74746025 74746204 -152778374 + MIR SINE MIR 74 262 0 1777 171 17 0 chr3 74746262 74746554 -152778024 + AluJb SINE Alu 1 297 -15 934 214 43 5 chr3 74747409 74747619 -152776959 + MER20 DNA MER1_type 2 219 0 552 272 63 16 chr3 74748045 74748236 -152776342 + MIR3 SINE MIR 3 202 -6 281 285 65 85 chr3 74750130 74750269 -152774309 + L2 LINE L2 3118 3253 -60 923 261 0 5 chr3 74750269 74750491 -152774087 + MER58A DNA MER1_type 4 224 0 281 285 65 85 chr3 74750491 74750551 -152774027 + L2 LINE L2 3253 3313 0 1243 173 0 0 chr3 74750680 74750888 -152773690 + MER46A DNA MER2_type 2 209 -27 468 290 45 45 chr3 74750879 74751103 -152773475 - LTR16A LTR ERVL -28 422 199 * 201 167 0 0 chr3 74752716 74752752 -152771826 + T-rich Low_complexity Low_complexity 1 36 0 1055 166 142 0 chr3 74753293 74753498 -152771080 - MER46A DNA MER2_type -1 235 2 308 292 25 68 chr3 74753627 74753687 -152770891 - L2 LINE L2 0 3313 3252 934 262 0 4 chr3 74753687 74753912 -152770666 - MER58A DNA MER1_type 0 224 1 308 292 25 68 chr3 74753912 74754012 -152770566 - L2 LINE L2 -61 3252 3160 672 286 100 0 chr3 74755010 74755241 -152769337 - MIR SINE MIR -1 261 8 270 248 191 9 chr3 74755633 74755738 -152768840 - MIR SINE MIR -37 225 102 678 312 139 28 chr3 74756004 74756704 -152767874 + L2 LINE L2 2544 3306 -7 323 304 43 17 chr3 74756704 74756819 -152767759 - MER91C DNA MER1_type -1 139 22 219 188 0 0 chr3 74756820 74756868 -152767710 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 1417 262 47 10 chr3 74757952 74758361 -152766217 + LTR16A LTR ERVL 26 449 -1 817 196 0 0 chr3 74758953 74759101 -152765477 + MER58B DNA MER1_type 190 337 -4 230 276 117 7 chr3 74759190 74759335 -152765243 + L1ME4a LINE L1 5957 6117 -4 1375 203 0 38 chr3 74759372 74759663 -152764915 + AluJb SINE Alu 1 280 -32 32 57 0 0 chr3 74760124 74760177 -152764401 + AT_rich Low_complexity Low_complexity 1 53 0 675 219 0 0 chr3 74760177 74760300 -152764278 - FLAM_C SINE Alu -16 127 5 300 304 82 19 chr3 74760358 74760516 -152764062 - MIR SINE MIR -78 184 17 494 288 11 63 chr3 74761447 74761601 -152762977 - MIR SINE MIR -80 182 38 1072 147 17 69 chr3 74761601 74761832 -152762746 - MER20 DNA MER1_type 0 219 1 494 288 11 63 chr3 74761832 74761868 -152762710 - MIR SINE MIR -224 38 2 23 0 0 0 chr3 74762905 74762928 -152761650 + AT_rich Low_complexity Low_complexity 1 23 0 1794 166 0 27 chr3 74762934 74763235 -152761343 + AluJo SINE Alu 1 293 -19 324 291 70 69 chr3 74763296 74763722 -152760856 - L2 LINE L2 -115 3157 2715 564 301 136 33 chr3 74764037 74764234 -152760344 - L2 LINE L2 -1 3312 3137 1706 138 4 34 chr3 74764234 74764502 -152760076 + AluJb SINE Alu 1 260 -52 564 301 136 33 chr3 74764502 74764746 -152759832 - L2 LINE L2 -176 3137 2763 268 309 59 33 chr3 74765272 74765424 -152759154 + MIR SINE MIR 2 157 -105 2254 112 0 10 chr3 74766085 74766397 -152758181 + AluSg SINE Alu 1 309 -1 397 306 28 14 chr3 74766525 74766669 -152757909 + MIR SINE MIR 9 154 -108 2064 135 0 3 chr3 74766759 74767056 -152757522 + AluSx SINE Alu 6 301 -11 196 211 0 0 chr3 74767067 74767105 -152757473 + MIR SINE MIR 211 248 -14 391 309 0 21 chr3 74767122 74767219 -152757359 + MIR3 SINE MIR 72 166 -42 1077 210 8 29 chr3 74767592 74767835 -152756743 + MIR SINE MIR 1 238 -24 257 253 40 0 chr3 74769609 74769684 -152754894 - MIR SINE MIR -10 252 175 412 239 198 36 chr3 74769740 74769907 -152754671 + L2 LINE L2 3120 3313 0 1461 207 80 12 chr3 74770795 74771220 -152753358 - Charlie4a DNA MER1_type -54 454 1 411 252 19 0 chr3 74771500 74771603 -152752975 - MER81 DNA DNA -2 112 8 595 266 34 6 chr3 74771623 74771800 -152752778 + MIR SINE MIR 78 259 -3 288 230 40 0 chr3 74771979 74772053 -152752525 - MER116 DNA Mariner 0 80 4 1660 167 10 35 chr3 74772449 74772761 -152751817 + AluJo SINE Alu 4 307 -5 705 152 54 179 chr3 74772786 74773090 -152751488 + MER33 DNA MER1_type 3 255 -2330 1993 163 42 12 chr3 74773090 74773519 -152751059 + L1MB4 LINE L1 5733 6174 -6 705 152 54 179 chr3 74773519 74773582 -152750996 + MER33 DNA MER1_type 255 324 0 427 234 99 82 chr3 74773636 74773807 -152750771 + MIR SINE MIR 12 185 -77 204 259 37 12 chr3 74774808 74774889 -152749689 - MIR SINE MIR -51 211 129 298 261 43 43 chr3 74776894 74776986 -152747592 - L2 LINE L2 -17 3255 3164 234 299 46 23 chr3 74777474 74777561 -152747017 + MIR3 SINE MIR 98 186 -22 1589 203 40 0 chr3 74778768 74779068 -152745510 + AluJo SINE Alu 1 312 0 264 122 0 0 chr3 74779070 74779111 -152745467 + (GGGA)n Simple_repeat Simple_repeat 3 43 0 180 0 0 0 chr3 74779212 74779232 -152745346 + (A)n Simple_repeat Simple_repeat 1 20 0 450 191 183 2 chr3 74779438 74779648 -152744930 - MLT1H LTR MaLR 0 549 298 219 384 161 0 chr3 74780336 74780448 -152744130 - L3b LINE CR1 -2 1581 1452 222 128 0 0 chr3 74780622 74780661 -152743917 + (GA)n Simple_repeat Simple_repeat 2 40 0 301 331 51 19 chr3 74781219 74781369 -152743209 - MIR SINE MIR -63 145 31 435 237 37 15 chr3 74781456 74781591 -152742987 + L1ME4a LINE L1 5729 5866 -255 1583 129 18 141 chr3 74781640 74782036 -152742542 - MER7A DNA MER2_type 0 346 2 330 115 0 0 chr3 74782057 74782109 -152742469 + (CA)n Simple_repeat Simple_repeat 2 53 0 21 57 0 0 chr3 74783444 74783479 -152741099 + AT_rich Low_complexity Low_complexity 1 35 0 226 293 66 19 chr3 74784375 74784481 -152740097 + MIR SINE MIR 4 114 -148 216 0 0 0 chr3 74784823 74784847 -152739731 + (TTA)n Simple_repeat Simple_repeat 2 25 0 305 258 145 32 chr3 74785333 74785457 -152739121 - MIR SINE MIR -55 153 16 1342 242 42 42 chr3 74785478 74785983 -152738595 + MLT1D LTR MaLR 1 505 0 1494 176 47 39 chr3 74786029 74786308 -152738270 + AluJo SINE Alu 2 282 -30 311 173 13 27 chr3 74787406 74787481 -152737097 - MER116 DNA Mariner -5 75 2 8241 28 0 0 chr3 74788060 74789802 -152734776 - L1PA3 LINE L1 0 6155 4414 3262 28 0 0 chr3 74789802 74790199 -152734379 + L1PA3 LINE L1 4002 4398 -1748 579 324 84 20 chr3 74790264 74790706 -152733872 - LTR33 LTR ERVL -5 516 47 678 345 35 0 chr3 74790843 74791072 -152733506 - MIR SINE MIR -3 259 23 254 362 111 30 chr3 74791239 74791438 -152733140 + L2 LINE L2 2878 3092 -180 806 274 48 99 chr3 74791520 74791995 -152732583 + MLT1K LTR MaLR 2 452 -136 196 407 0 0 chr3 74793967 74794053 -152730525 + L3 LINE CR1 631 716 -861 25 0 0 0 chr3 74794176 74794201 -152730377 + AT_rich Low_complexity Low_complexity 1 25 0 254 312 72 40 chr3 74794303 74794428 -152730150 + L3 LINE CR1 969 1097 -480 999 245 52 46 chr3 74794581 74794908 -152729670 + L2 LINE L2 2312 2640 -674 750 289 157 32 chr3 74794951 74795383 -152729195 + L2 LINE L2 2825 3310 -3 2027 128 42 0 chr3 74795683 74795972 -152728606 + AluSx SINE Alu 1 301 -11 341 271 90 62 chr3 74796066 74796179 -152728399 - MIR SINE MIR -69 193 72 2775 110 2 19 chr3 74796179 74796608 -152727970 + L1PA14 LINE L1 5740 6161 0 341 271 90 62 chr3 74796608 74796671 -152727907 - MIR SINE MIR -190 72 12 3237 202 57 1 chr3 74796676 74797483 -152727095 - Charlie1a DNA MER1_type -4 1451 600 1909 144 6 28 chr3 74797614 74797933 -152726645 + AluJb SINE Alu 1 312 0 603 189 147 14 chr3 74798028 74798171 -152726407 - Charlie1a DNA MER1_type -1293 162 1 210 285 200 6 chr3 74798190 74798355 -152726223 + MIR SINE MIR 54 250 -12 186 390 0 0 chr3 74798386 74798468 -152726110 - MIR3 SINE MIR -126 82 1 574 253 104 22 chr3 74798587 74798769 -152725809 + MIR SINE MIR 48 244 -18 486 313 34 82 chr3 74798804 74799098 -152725480 + L2 LINE L2 2993 3272 0 295 306 250 0 chr3 74799179 74799323 -152725255 + MER5A DNA MER1_type 9 188 -1 397 292 94 30 chr3 74800615 74800848 -152723730 + MIR SINE MIR 8 255 -7 566 198 76 58 chr3 74801925 74802097 -152722481 + MER5B DNA MER1_type 1 175 -3 180 0 0 0 chr3 74802409 74802429 -152722149 + (ATG)n Simple_repeat Simple_repeat 3 22 0 319 288 81 9 chr3 74802435 74802546 -152722032 - MIR SINE MIR -97 165 47 247 337 39 90 chr3 74802711 74802990 -152721588 - L2 LINE L2 -111 3161 2897 731 211 53 6 chr3 74803004 74803175 -152721403 - MER5A DNA MER1_type 0 189 11 243 0 0 0 chr3 74804661 74804688 -152719890 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 2091 167 142 2 chr3 74804904 74805354 -152719224 - LTR64 LTR ERVK 0 513 1 494 301 68 36 chr3 74805778 74806027 -152718551 - MIR SINE MIR -1 261 5 261 391 18 18 chr3 74807004 74807224 -152717354 - MIR SINE MIR -32 230 11 228 135 0 0 chr3 74807319 74807356 -152717222 + (A)n Simple_repeat Simple_repeat 1 37 0 2095 145 3 3 chr3 74807764 74808074 -152716504 - AluJb SINE Alu 0 312 3 471 200 0 0 chr3 74808121 74808221 -152716357 + L1MC2 LINE L1 5803 5902 -442 336 233 116 0 chr3 74808221 74808307 -152716271 + L1MC4 LINE L1 6608 6703 -1339 319 296 23 0 chr3 74808231 74808319 -152716259 - L1MC4 LINE L1 -1339 6703 6614 * 1800 149 121 5 chr3 74808325 74808714 -152715864 + L1MC2 LINE L1 5902 6335 -9 184 273 104 0 chr3 74809319 74809396 -152715182 + L2 LINE L2 3187 3271 -1 389 305 107 6 chr3 74809731 74809908 -152714670 + MLT1K LTR MaLR 143 337 -251 234 340 30 0 chr3 74810554 74810654 -152713924 - MIR SINE MIR 0 262 160 318 259 209 25 chr3 74810816 74810974 -152713604 - MIR3 SINE MIR -17 191 5 1872 157 131 18 chr3 74811938 74812320 -152712258 - MSTA LTR MaLR 0 428 4 2087 133 0 14 chr3 74812665 74813011 -152711567 - L1MA4A LINE L1 -11 6292 5952 2208 128 0 0 chr3 74813044 74813348 -152711230 + AluSx SINE Alu 1 304 -8 1505 149 142 3 chr3 74813891 74814207 -152710371 + MER46B DNA MER2_type 1 235 -1 361 283 147 30 chr3 74814207 74814405 -152710173 - MIR SINE MIR -1 261 41 792 224 146 73 chr3 74814470 74814881 -152709697 - HsTC2 DNA Tc2 0 1900 1284 482 301 160 5 chr3 74815120 74815333 -152709245 - MIR SINE MIR -14 248 3 410 306 124 64 chr3 74816275 74816761 -152707817 + L2 LINE L2 2384 2908 -406 2309 69 16 10 chr3 74816761 74817065 -152707513 - AluY SINE Alu -5 306 1 410 306 124 64 chr3 74817065 74817127 -152707451 + L2 LINE L2 2908 2965 -349 1003 281 73 51 chr3 74817800 74818470 -152706108 - L1ME3A LINE L1 -224 5946 5262 317 244 98 30 chr3 74818656 74818820 -152705758 - MER113 DNA MER1_type? -345 176 2 243 61 0 0 chr3 74818997 74819030 -152705548 + (TG)n Simple_repeat Simple_repeat 1 33 0 26 30 0 0 chr3 74820285 74820318 -152704260 + AT_rich Low_complexity Low_complexity 1 33 0 1656 156 24 14 chr3 74820318 74820607 -152703971 + AluJb SINE Alu 1 292 -20 402 237 17 59 chr3 74820760 74820878 -152703700 - L2 LINE L2 0 3313 3201 369 235 166 0 chr3 74820987 74821174 -152703404 - L1ME2 LINE L1 -249 5915 5698 700 197 7 20 chr3 74821195 74821347 -152703231 - Tigger2 DNA MER2_type 0 2718 2569 1243 128 29 0 chr3 74821351 74821555 -152703023 - Tigger2 DNA MER2_type -2508 210 1 3008 214 52 24 chr3 74821555 74822914 -152701664 - L1ME LINE L1 -379 5785 4388 1599 148 3 44 chr3 74822921 74823239 -152701339 - L1MC3 LINE L1 -3 7782 7478 4205 192 38 15 chr3 74823282 74824513 -152700065 + L1MB5 LINE L1 4909 6174 0 423 235 20 10 chr3 74824529 74824627 -152699951 + L2 LINE L2 3212 3310 -3 1709 187 24 37 chr3 74825010 74825385 -152699193 - MLT1A2 LTR MaLR 0 374 5 28360 118 14 66 chr3 74825588 74826725 -152697853 - L1PA7 LINE L1 -1 6468 5273 2427 63 0 3 chr3 74826725 74827024 -152697554 - AluY SINE Alu -13 298 1 28360 118 14 66 chr3 74827024 74832381 -152692197 - L1PA7 LINE L1 -1196 5273 8 365 278 52 0 chr3 74832436 74832533 -152692045 - MIR SINE MIR -114 148 47 329 43 21 0 chr3 74832980 74833027 -152691551 + (TC)n Simple_repeat Simple_repeat 1 48 0 2466 57 40 0 chr3 74833629 74833928 -152690650 + AluY SINE Alu 1 311 0 312 318 76 8 chr3 74834129 74834261 -152690317 + MIR SINE MIR 110 250 -12 321 264 110 0 chr3 74834276 74834367 -152690211 - MER91C DNA MER1_type 0 140 40 867 243 11 11 chr3 74834424 74834601 -152689977 + MER8 DNA MER2_type 1 177 -62 432 160 0 27 chr3 74834634 74834709 -152689869 - Tigger2 DNA MER2_type -2645 73 1 1507 167 115 13 chr3 74834730 74835035 -152689543 + MER44D DNA MER2_type 4 609 0 219 127 84 14 chr3 74835044 74835115 -152689463 + (TATAA)n Simple_repeat Simple_repeat 4 79 0 216 330 87 26 chr3 74835939 74836054 -152688524 - L2 LINE L2 0 3272 3151 268 302 81 24 chr3 74836963 74837037 -152687541 - MIR SINE MIR 0 262 194 2062 156 0 0 chr3 74837037 74837339 -152687239 + AluSx SINE Alu 1 302 -10 268 302 81 24 chr3 74837339 74837476 -152687102 - MIR SINE MIR -68 194 36 1682 172 3 38 chr3 74837508 74837822 -152686756 + AluJo SINE Alu 4 306 -6 288 0 0 0 chr3 74838162 74838194 -152686384 + (CA)n Simple_repeat Simple_repeat 2 33 0 273 261 46 69 chr3 74838238 74838368 -152686210 + MIR SINE MIR 89 215 -47 486 282 88 28 chr3 74838659 74838840 -152685738 + MIR SINE MIR 20 211 -51 753 236 65 37 chr3 74839497 74839713 -152684865 - MER58 DNA MER1_type -2195 225 4 293 280 33 67 chr3 74840903 74841053 -152683525 - MIR SINE MIR -45 217 73 391 288 123 24 chr3 74841237 74841407 -152683171 - MIR3 SINE MIR -6 202 16 297 219 10 3 chr3 74841427 74841557 -152683021 - MER117 DNA MER1_type -33 164 1 536 290 148 0 chr3 74841596 74841772 -152682806 - MIR SINE MIR -14 248 47 264 226 0 0 chr3 74841784 74841846 -152682732 + (CATATA)n Simple_repeat Simple_repeat 6 67 0 261 333 39 25 chr3 74844180 74844384 -152680194 - MIR SINE MIR -36 226 20 1917 190 25 19 chr3 74844524 74844887 -152679691 - MLT1A1 LTR MaLR 0 365 1 2243 162 60 36 chr3 74845216 74845630 -152678948 + MSTA LTR MaLR 5 428 0 276 358 34 34 chr3 74846985 74847164 -152677414 + L2 LINE L2 2882 3060 -212 703 253 174 0 chr3 74847205 74847395 -152677183 - MER58A DNA MER1_type 0 224 2 629 309 14 53 chr3 74848243 74848528 -152676050 + MLT1K LTR MaLR 11 284 -304 742 245 30 25 chr3 74848580 74848780 -152675798 + MLT1K LTR MaLR 386 586 -2 850 196 0 0 chr3 74849019 74849152 -152675426 + FLAM_A SINE Alu 1 133 0 517 273 56 25 chr3 74849201 74849362 -152675216 - MIR3 SINE MIR -6 202 37 314 301 23 45 chr3 74849453 74849586 -152674992 + MIR SINE MIR 82 211 -51 433 274 195 24 chr3 74849612 74849904 -152674674 - L2 LINE L2 -3 3310 2969 304 243 159 9 chr3 74850086 74850193 -152674385 + L1MB8 LINE L1 5540 5662 -459 284 305 15 30 chr3 74850262 74850393 -152674185 + L1MB8 LINE L1 5659 5787 -2021 231 212 0 35 chr3 74850525 74850622 -152673956 + L1MB8 LINE L1 6080 6176 -2 329 289 61 28 chr3 74850698 74850878 -152673700 - L1ME LINE L1 -343 5778 5593 568 321 30 25 chr3 74851361 74851722 -152672856 - L1MC4a LINE L1 -1874 5934 5572 1042 195 72 0 chr3 74852838 74853033 -152671545 - MER3 DNA MER1_type 0 209 1 248 299 165 0 chr3 74853194 74853291 -152671287 + L2 LINE L2 3154 3266 -6 337 306 161 32 chr3 74853835 74854056 -152670522 + MIR SINE MIR 9 256 -6 2086 215 60 43 chr3 74854252 74854862 -152669716 + MLT1E2 LTR MaLR 1 626 0 1804 155 13 28 chr3 74854988 74855305 -152669273 + AluJo SINE Alu 1 312 0 7166 83 8 2 chr3 74855358 74855936 -152668642 + L1PA13 LINE L1 4308 4881 -1282 2269 95 10 0 chr3 74855936 74856232 -152668346 + AluY SINE Alu 1 299 -12 7166 83 8 2 chr3 74856232 74857401 -152667177 + L1PA13 LINE L1 4881 6160 -3 22 0 0 0 chr3 74857473 74857495 -152667083 + AT_rich Low_complexity Low_complexity 1 22 0 826 134 4 207 chr3 74857560 74857806 -152666772 + MLT1C LTR MaLR 193 465 -2 1678 152 29 89 chr3 74857814 74858196 -152666382 - MLT1B LTR MaLR 0 390 32 345 165 76 25 chr3 74858305 74858384 -152666194 + MIR SINE MIR 61 143 -65 294 342 34 8 chr3 74858490 74858607 -152665971 - L2 LINE L2 -3 3269 3150 854 178 0 0 chr3 74858610 74858745 -152665833 + AluJo SINE Alu 5 139 -173 201 152 0 0 chr3 74858764 74858797 -152665781 + A-rich Low_complexity Low_complexity 3 35 0 2723 148 38 82 chr3 74858968 74859517 -152665061 - LTR45 LTR ERV1 0 525 1 21 0 0 0 chr3 74859741 74859762 -152664816 + AT_rich Low_complexity Low_complexity 1 21 0 406 265 158 10 chr3 74861261 74861457 -152663121 + MIR SINE MIR 1 225 -37 2507 115 25 3 chr3 74861643 74861999 -152662579 + THE1B LTR MaLR 1 364 0 2195 142 27 32 chr3 74862057 74862491 -152662087 - LTR23 LTR ERV1 0 467 1 692 250 58 0 chr3 74862591 74862747 -152661831 + MER5A DNA MER1_type 1 165 -24 209 289 180 52 chr3 74863758 74863952 -152660626 - L2 LINE L2 -249 3064 2846 207 304 120 43 chr3 74864019 74864111 -152660467 - L2 LINE L2 -477 2837 2739 301 226 73 131 chr3 74864783 74864920 -152659658 + L2 LINE L2 3141 3269 -3 306 338 75 21 chr3 74865031 74865271 -152659307 - MIR SINE MIR -2 260 8 24 0 0 0 chr3 74865306 74865330 -152659248 + AT_rich Low_complexity Low_complexity 1 24 0 341 291 117 0 chr3 74865771 74865874 -152658704 + MLT1J LTR MaLR 3 117 -394 2358 61 0 58 chr3 74865950 74866277 -152658301 - AluY SINE Alu -3 308 1 1045 76 8 0 chr3 74866288 74866419 -152658159 - AluY SINE Alu -179 132 1 830 242 55 48 chr3 74866478 74866751 -152657827 + MLT1J LTR MaLR 237 511 0 1641 200 0 16 chr3 74867115 74867420 -152657158 + AluJo SINE Alu 1 300 -12 189 229 260 21 chr3 74867584 74867680 -152656898 + MER5A DNA MER1_type 48 166 -23 * 345 255 10 41 chr3 74867611 74867709 -152656869 - MER5A DNA MER1_type -85 104 10 663 274 42 31 chr3 74867720 74867979 -152656599 + L2 LINE L2 2677 2938 -376 247 314 205 13 chr3 74867974 74868130 -152656448 + L2 LINE L2 3106 3291 -22 * 203 161 0 0 chr3 74868251 74868282 -152656296 + (CA)n Simple_repeat Simple_repeat 2 32 0 254 347 11 63 chr3 74869458 74869648 -152654930 - MIR SINE MIR -66 196 17 533 303 113 0 chr3 74870094 74870289 -152654289 + MIR SINE MIR 46 262 0 934 246 34 0 chr3 74870350 74870586 -152653992 - MIR SINE MIR -12 250 7 387 344 21 101 chr3 74870935 74871322 -152653256 + L2 LINE L2 2910 3265 -7 420 309 82 45 chr3 74872191 74872434 -152652144 - MIR SINE MIR -3 259 8 342 0 0 0 chr3 74872575 74872613 -152651965 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 405 0 0 0 chr3 74872612 74872657 -152651921 + (GA)n Simple_repeat Simple_repeat 2 46 0 765 122 0 0 chr3 74872662 74872760 -152651818 - AluJb SINE Alu -207 105 8 410 299 10 103 chr3 74873088 74873282 -152651296 + MLT1L LTR MaLR 231 484 -105 424 253 28 70 chr3 74873341 74873492 -152651086 + L1ME1 LINE L1 5680 5824 -297 2049 139 0 7 chr3 74873492 74873795 -152650783 + AluSx SINE Alu 1 301 -11 424 253 28 70 chr3 74873795 74873884 -152650694 + L1ME1 LINE L1 5824 5915 -206 1814 168 66 47 chr3 74874390 74874645 -152649933 + MLT1B LTR MaLR 1 267 -123 2373 74 3 0 chr3 74874645 74874954 -152649624 + AluY SINE Alu 1 310 -1 1814 168 66 47 chr3 74874954 74875078 -152649500 + MLT1B LTR MaLR 267 387 -3 1203 251 37 58 chr3 74875366 74875566 -152649012 + MER20B DNA MER1_type 304 507 -276 1171 186 93 0 chr3 74875566 74875770 -152648808 + MER58A DNA MER1_type 2 224 0 1203 251 37 58 chr3 74875770 74875999 -152648579 + MER20B DNA MER1_type 507 724 -59 324 276 143 0 chr3 74876140 74876245 -152648333 + L2 LINE L2 3194 3313 0 188 333 30 44 chr3 74876293 74876428 -152648150 + L3 LINE CR1 1425 1557 -20 4396 60 6 0 chr3 74876439 74876960 -152647618 - L1PA7 LINE L1 0 6154 5631 1406 245 108 36 chr3 74877214 74877468 -152647110 + MLT1H LTR MaLR 4 238 -311 1032 235 52 0 chr3 74877468 74877681 -152646897 + MER58A DNA MER1_type 1 224 0 1406 245 108 36 chr3 74877681 74877924 -152646654 + MLT1H LTR MaLR 238 537 -12 1077 264 102 39 chr3 74878013 74878426 -152646152 + LTR16C LTR ERVL 53 491 0 487 259 0 23 chr3 74878426 74878557 -152646021 + MIR SINE MIR 81 208 -54 2324 148 8 0 chr3 74878588 74878946 -152645632 + MER46B DNA MER2_type 1 236 0 358 287 8 31 chr3 74878957 74879086 -152645492 - MIR SINE MIR -34 228 103 1982 150 64 0 chr3 74879165 74879492 -152645086 + MER7A DNA MER2_type 1 346 0 181 222 89 0 chr3 74880686 74880731 -152643847 + MIR SINE MIR 89 137 -71 492 343 44 6 chr3 74880987 74881168 -152643410 + MIR SINE MIR 6 193 -69 23 0 0 0 chr3 74881233 74881256 -152643322 + AT_rich Low_complexity Low_complexity 1 23 0 456 250 101 14 chr3 74881757 74881905 -152642673 - MIR SINE MIR -54 208 48 246 328 30 38 chr3 74882993 74883124 -152641454 - L2 LINE L2 -508 2806 2677 1858 170 56 6 chr3 74883798 74884156 -152640422 - MLT2B1 LTR ERVL -144 376 1 1342 293 64 13 chr3 74884492 74884989 -152639589 + L2 LINE L2 2791 3312 -1 2628 133 4 13 chr3 74885149 74885600 -152638978 - L1MB3 LINE L1 -2 6181 5735 704 298 161 5 chr3 74886002 74886442 -152638136 - L2 LINE L2 -965 2349 1841 274 397 11 17 chr3 74887058 74887232 -152637346 + MIR SINE MIR 18 190 -72 27 49 0 0 chr3 74887533 74887574 -152637004 + AT_rich Low_complexity Low_complexity 1 41 0 207 271 0 0 chr3 74888193 74888241 -152636337 + (ATG)n Simple_repeat Simple_repeat 1 48 0 509 227 36 21 chr3 74888282 74888434 -152636144 - MIR SINE MIR -50 158 54 306 215 125 69 chr3 74889276 74889420 -152635158 - MIR SINE MIR -20 242 91 282 217 12 24 chr3 74889422 74889505 -152635073 + L1MC5 LINE L1 7831 7912 -49 221 314 49 29 chr3 74889539 74889641 -152634937 - MIR SINE MIR -158 104 1 28 29 0 0 chr3 74890773 74890808 -152633770 + AT_rich Low_complexity Low_complexity 1 35 0 382 215 128 0 chr3 74891071 74891220 -152633358 - MER20B DNA MER1_type -117 666 499 879 292 77 30 chr3 74891315 74891808 -152632770 - MER20B DNA MER1_type -267 516 1 405 0 0 0 chr3 74892911 74892956 -152631622 + (TG)n Simple_repeat Simple_repeat 2 46 0 197 349 45 0 chr3 74893037 74893103 -152631475 + L2 LINE L2 3139 3207 -65 362 140 0 0 chr3 74943104 74943161 -152581417 + L1PB1 LINE L1 6093 6149 -2 280 64 43 0 chr3 74943296 74943343 -152581235 + (CA)n Simple_repeat Simple_repeat 1 49 0 336 247 234 25 chr3 74943856 74944014 -152580564 + MIR SINE MIR 1 191 -71 * 390 337 122 0 chr3 74944012 74944184 -152580394 - MIR SINE MIR 0 262 70 301 340 22 38 chr3 74946352 74946537 -152578041 + L2 LINE L2 2827 3008 -264 1775 159 0 0 chr3 74946992 74947262 -152577316 + AluSx SINE Alu 13 282 -30 5105 80 10 1 chr3 74947362 74948061 -152576517 - L1P LINE L1 -1887 4259 3555 2814 198 49 5 chr3 74948040 74948631 -152575947 - L1P LINE L1 -5503 643 27 * 581 318 60 4 chr3 74948858 74949091 -152575487 - MIR SINE MIR 0 262 17 295 277 192 25 chr3 74949311 74949488 -152575090 - MIR SINE MIR -46 216 16 272 298 119 66 chr3 74949854 74950156 -152574422 + L2 LINE L2 2579 2896 -418 * 288 267 12 35 chr3 74950146 74950232 -152574346 - L3 LINE CR1 -54 1523 1440 383 230 235 9 chr3 74950314 74950499 -152574079 + MIR SINE MIR 30 261 -1 2312 112 0 3 chr3 74950954 74951266 -152573312 + AluY SINE Alu 1 311 0 612 262 103 99 chr3 74952087 74952561 -152572017 - MLT1K LTR MaLR 0 476 1 278 299 97 19 chr3 74953405 74953559 -152571019 - MER103 DNA DNA 0 166 1 212 315 43 22 chr3 74954461 74954553 -152570025 + L2 LINE L2 3220 3313 0 22 35 0 0 chr3 74954611 74954640 -152569938 + AT_rich Low_complexity Low_complexity 1 29 0 2047 154 46 35 chr3 74954671 74955042 -152569536 - THE1C LTR MaLR 0 375 1 746 190 5 97 chr3 74955080 74955296 -152569282 + MER20 DNA MER1_type 24 219 0 1659 245 110 41 chr3 74956098 74956653 -152567925 + MLT1E LTR MaLR 1 593 0 522 227 123 19 chr3 74957368 74957522 -152567056 - LTR16A LTR ERVL 0 450 281 1780 207 49 28 chr3 74957543 74957969 -152566609 + L1ME3 LINE L1 5717 6151 -11 286 42 42 0 chr3 74958086 74958134 -152566444 + (TTTTG)n Simple_repeat Simple_repeat 2 51 0 1589 210 0 0 chr3 74958137 74958428 -152566150 - AluJo SINE Alu -21 291 1 374 294 82 22 chr3 74958697 74958928 -152565650 - L1M4 LINE L1 -1890 4256 4012 7493 57 7 0 chr3 74958954 74960112 -152564466 + L1PA5 LINE L1 4985 6150 -4 282 222 0 111 chr3 74961367 74961424 -152563154 - MIR SINE MIR -14 248 203 2332 96 0 10 chr3 74961424 74961737 -152562841 - AluSq SINE Alu -3 310 1 282 222 0 111 chr3 74961737 74961769 -152562809 - MIR SINE MIR -59 203 169 1902 202 34 12 chr3 74961813 74962228 -152562350 - L1MC3 LINE L1 0 7785 7362 918 303 98 23 chr3 74962472 74962858 -152561720 - LTR16A LTR ERVL -13 437 23 273 311 93 12 chr3 74963317 74963565 -152561013 - L1M4 LINE L1 -2919 3227 2960 341 217 30 40 chr3 74963568 74963699 -152560879 + MLT1J LTR MaLR 26 113 -333 390 296 14 35 chr3 74963869 74964011 -152560567 - MLT1J LTR MaLR -372 139 1 453 339 27 11 chr3 74964062 74964248 -152560330 + MLT1J LTR MaLR 164 352 -159 287 304 29 0 chr3 74964739 74964841 -152559737 + MIR SINE MIR 158 262 0 714 280 178 64 chr3 74966049 74966499 -152558079 - MLT1K LTR MaLR -71 517 17 444 284 8 8 chr3 74966640 74966767 -152557811 + MLT1J LTR MaLR 25 151 -360 1626 209 150 37 chr3 74966767 74966791 -152557787 + MLT1D LTR MaLR 1 21 -484 2867 94 8 26 chr3 74966791 74967173 -152557405 - THE1C LTR MaLR 0 375 1 1626 209 150 37 chr3 74967173 74967602 -152556976 + MLT1D LTR MaLR 21 505 0 462 277 78 25 chr3 74967610 74967891 -152556687 + MLT1J LTR MaLR 149 476 -35 1084 316 38 7 chr3 74967935 74968362 -152556216 + LTR16B LTR ERVL 8 447 -17 423 0 0 0 chr3 74968988 74969035 -152555543 + (TA)n Simple_repeat Simple_repeat 1 47 0 594 194 0 46 chr3 74969035 74969132 -152555446 - L1PA8A LINE L1 -19 6112 6019 23 78 0 0 chr3 74969262 74969313 -152555265 + AT_rich Low_complexity Low_complexity 1 51 0 619 237 52 29 chr3 74970291 74970464 -152554114 + MIR SINE MIR 71 247 -15 374 256 63 118 chr3 74971101 74971183 -152553395 + MIR SINE MIR 28 113 -149 2281 102 0 0 chr3 74971183 74971478 -152553100 - AluSc SINE Alu -14 295 1 374 256 63 118 chr3 74971478 74971633 -152552945 + MIR SINE MIR 113 252 -10 28 48 0 0 chr3 74971646 74971688 -152552890 + AT_rich Low_complexity Low_complexity 1 42 0 688 228 103 39 chr3 74971895 74972176 -152552402 - L1ME4a LINE L1 -238 5883 5585 2047 133 11 0 chr3 74972315 74972601 -152551977 + AluSc SINE Alu 1 289 -20 330 294 236 49 chr3 74973047 74973475 -152551103 + L2 LINE L2 2806 3313 0 208 206 0 27 chr3 74973743 74973816 -152550762 + GA-rich Low_complexity Low_complexity 1 71 0 3947 172 49 25 chr3 74974269 74975061 -152549517 - L1MB8 LINE L1 -1 6177 5367 276 315 41 14 chr3 74975071 74975217 -152549361 + L2 LINE L2 2664 2813 -501 329 292 16 53 chr3 74976583 74976726 -152547852 - MIR SINE MIR -65 143 21 288 91 0 0 chr3 74976760 74976804 -152547774 + (CA)n Simple_repeat Simple_repeat 1 44 0 25 31 0 0 chr3 74977314 74977346 -152547232 + AT_rich Low_complexity Low_complexity 1 32 0 415 348 55 62 chr3 74977967 74978369 -152546209 + L2 LINE L2 2862 3260 -12 664 322 68 60 chr3 74978553 74979402 -152545176 + L2 LINE L2 2422 3262 -10 273 98 0 0 chr3 74979403 74979444 -152545134 + (TGGA)n Simple_repeat Simple_repeat 2 42 0 2137 129 3 3 chr3 74980900 74981210 -152543368 + AluSx SINE Alu 1 310 -2 21 82 0 0 chr3 74981423 74981472 -152543106 + AT_rich Low_complexity Low_complexity 1 49 0 657 0 0 0 chr3 74982155 74982228 -152542350 + (TA)n Simple_repeat Simple_repeat 1 73 0 520 190 135 43 chr3 74984780 74984943 -152539635 + MER5B DNA MER1_type 1 178 0 311 219 55 0 chr3 74987226 74987299 -152537279 + MIR SINE MIR 40 116 -146 838 196 0 24 chr3 74987463 74987631 -152536947 + FRAM SINE Alu 1 159 -17 2279 100 0 3 chr3 74987669 74987968 -152536610 - AluSg SINE Alu -12 298 1 313 278 150 23 chr3 74988822 74988995 -152535583 - MIR3 SINE MIR -11 197 3 482 196 39 10 chr3 74989159 74989261 -152535317 - MIR SINE MIR -120 142 38 258 32 0 0 chr3 74989828 74989859 -152534719 + (TGAA)n Simple_repeat Simple_repeat 4 34 0 348 302 55 30 chr3 74989980 74990182 -152534396 + MLT1K LTR MaLR 375 581 -7 387 308 170 6 chr3 74990681 74990863 -152533715 - MLT1K LTR MaLR -367 221 10 329 227 85 64 chr3 74992519 74992660 -152531918 + L1MC/D LINE L1 5676 5819 -1989 297 342 26 8 chr3 74992949 74993066 -152531512 - MIR3 SINE MIR -54 154 36 429 301 74 12 chr3 74993940 74994103 -152530475 - MIR SINE MIR -12 250 78 351 0 0 0 chr3 74995835 74995874 -152528704 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 267 109 0 125 chr3 74995896 74995960 -152528618 + L1MB7 LINE L1 23 78 -6464 2295 214 19 41 chr3 74995975 74996564 -152528014 + L1MB7 LINE L1 53 628 -5914 4524 196 44 8 chr3 74996569 74998450 -152526128 + L1MB7 LINE L1 4723 6675 -7 2155 123 0 0 chr3 74998549 74998877 -152525701 - AluSx SINE Alu 0 312 1 1389 111 0 0 chr3 74999686 74999867 -152524711 - AluSc SINE Alu -9 300 120 2419 209 64 10 chr3 75000847 75001360 -152523218 + MLT1F LTR MaLR 1 541 -1 515 310 90 35 chr3 75001360 75001705 -152522873 - LTR16C LTR ERVL -55 436 73 217 320 206 57 chr3 75001960 75002207 -152522371 + L2 LINE L2 2978 3261 -11 2365 94 25 0 chr3 75002211 75002572 -152522006 + L1MA5A LINE L1 5921 6290 -7 2205 46 0 11 chr3 75003879 75004141 -152520437 - AluY SINE Alu -15 296 38 617 303 29 63 chr3 75004489 75004872 -152519706 + MLT1K LTR MaLR 57 426 -162 226 247 90 45 chr3 75005173 75005262 -152519316 + MIR3 SINE MIR 15 107 -101 21 0 0 0 chr3 75005840 75005861 -152518717 + AT_rich Low_complexity Low_complexity 1 21 0 181 356 58 0 chr3 75006127 75006214 -152518364 + L2 LINE L2 2969 3060 -212 304 293 42 50 chr3 75006615 75006833 -152517745 - MIR SINE MIR -13 249 40 1292 186 17 0 chr3 75006869 75007100 -152517478 - MLT1A1 LTR MaLR -12 353 119 389 113 0 0 chr3 75008082 75008144 -152516434 - MLT2B1 LTR ERVL 0 520 459 330 238 24 24 chr3 75008145 75008229 -152516349 - L1MC4 LINE L1 -1344 6698 6615 462 210 0 0 chr3 75008259 75008383 -152516195 + (TAGG)n Simple_repeat Simple_repeat 1 124 0 1751 184 25 25 chr3 75008396 75008760 -152515818 - MLT2B3 LTR ERVL -40 514 151 531 296 46 31 chr3 75009460 75009720 -152514858 - Charlie8 DNA MER1_type -2153 264 1 630 258 142 40 chr3 75010012 75010237 -152514341 + MIR SINE MIR 12 259 -3 631 169 193 0 chr3 75012605 75012771 -152511807 + MER3 DNA MER1_type 5 202 -7 450 274 56 24 chr3 75012886 75013078 -152511500 - MIR SINE MIR -10 252 50 1172 177 28 16 chr3 75013104 75013353 -152511225 - MLT1A1 LTR MaLR 0 365 114 254 245 0 0 chr3 75013560 75013609 -152510969 + MIR SINE MIR 104 152 -110 1215 81 0 12 chr3 75014905 75015078 -152509500 - L1P4 LINE L1 -442 5726 5556 1758 96 4 4 chr3 75015078 75015324 -152509254 + L1PA10 LINE L1 5919 6167 -1 726 270 51 51 chr3 75015487 75015780 -152508798 - MLT1J LTR MaLR -29 482 190 2167 100 0 0 chr3 75015784 75016064 -152508514 + AluSg SINE Alu 1 280 -30 412 320 31 0 chr3 75016107 75016235 -152508343 + L2 LINE L2 3182 3313 0 1189 199 81 15 chr3 75016349 75016620 -152507958 - MSTD LTR MaLR 0 396 108 256 228 76 0 chr3 75016737 75016816 -152507762 - MLT1I LTR MaLR -1 408 324 267 290 0 10 chr3 75016997 75017097 -152507481 - MLT1I LTR MaLR -235 174 76 370 271 16 25 chr3 75019323 75019445 -152505133 - MIR SINE MIR -73 189 69 344 297 136 8 chr3 75019810 75019928 -152504650 + MIR SINE MIR 2 134 -128 727 221 67 157 chr3 75019931 75019998 -152504580 - MLT1H LTR MaLR -4 545 474 2150 109 0 33 chr3 75019998 75020300 -152504278 + AluY SINE Alu 1 292 -19 727 221 67 157 chr3 75020300 75020826 -152503752 - MLT1H LTR MaLR -75 474 5 1715 185 10 25 chr3 75022063 75022377 -152502201 - AluJo SINE Alu -3 309 1 627 283 36 46 chr3 75022390 75022834 -152501744 - MLT1J LTR MaLR -11 500 9 190 268 0 0 chr3 75022881 75022922 -152501656 + L2 LINE L2 3224 3264 -8 469 272 23 176 chr3 75023063 75023761 -152500817 - L2 LINE L2 0 3272 2686 231 279 105 0 chr3 75023740 75023826 -152500752 - L2 LINE L2 -5 3308 3214 * 590 211 56 7 chr3 75023844 75023986 -152500592 + MLT1J LTR MaLR 30 178 -333 526 241 80 12 chr3 75024101 75024263 -152500315 + MLT1J LTR MaLR 339 511 0 2295 123 0 0 chr3 75024554 75024862 -152499716 - AluSx SINE Alu -2 310 3 376 324 22 38 chr3 75025307 75025492 -152499086 - L2 LINE L2 -264 3008 2827 1854 157 3 7 chr3 75025938 75026232 -152498346 - AluJb SINE Alu -15 297 5 802 246 24 44 chr3 75026601 75026849 -152497729 + MIR SINE MIR 6 248 -14 534 16 0 0 chr3 75027335 75027398 -152497180 + (TG)n Simple_repeat Simple_repeat 2 64 0 2146 133 0 0 chr3 75027400 75027702 -152496876 - AluSg SINE Alu -8 302 1 328 262 115 77 chr3 75027766 75028079 -152496499 + MLT1L LTR MaLR 111 435 -180 335 319 37 11 chr3 75028423 75028578 -152496000 + MIR SINE MIR 1 154 -64 1654 214 3 0 chr3 75029321 75029620 -152494958 + AluJo SINE Alu 1 300 -12 504 246 82 0 chr3 75029874 75030081 -152494497 + MER20B DNA MER1_type 513 736 -47 17893 40 1 0 chr3 75031278 75034253 -152490325 - L1PA4 LINE L1 0 6155 3179 1324 45 0 17 chr3 75034253 75034422 -152490156 + L1P LINE L1 2694 2861 -3285 606 71 0 0 chr3 75034431 75034530 -152490048 - L1PA4 LINE L1 -2962 3184 3086 2068 84 0 3 chr3 75034631 75034942 -152489636 - L1P LINE L1 -844 5302 4993 3952 196 37 37 chr3 75034994 75036347 -152488231 + L1MB7 LINE L1 4803 6164 -20 23 0 0 0 chr3 75036574 75036597 -152487981 + AT_rich Low_complexity Low_complexity 1 23 0 1316 251 42 39 chr3 75037431 75037913 -152486665 + MER74B LTR ERVL 66 548 -74 239 179 119 0 chr3 75037858 75037925 -152486653 - MER88 LTR ERVL -311 153 79 * 589 291 127 15 chr3 75038086 75038426 -152486152 + LTR33 LTR ERVL 25 402 -119 2188 184 82 11 chr3 75039244 75039706 -152484872 + MLT1A1-int LTR MaLR 1241 1735 0 1445 199 28 19 chr3 75039706 75040068 -152484510 + MLT1A1 LTR MaLR 1 365 0 378 0 0 0 chr3 75041455 75041497 -152483081 + (TG)n Simple_repeat Simple_repeat 2 43 0 481 255 51 38 chr3 75042794 75042951 -152481627 - MIR SINE MIR -88 174 16 358 323 39 8 chr3 75043054 75043181 -152481397 - L2 LINE L2 -1 3271 3141 759 211 0 138 chr3 75043232 75043450 -152481128 - MER5A DNA MER1_type -1 188 1 3463 148 63 0 chr3 75043703 75044324 -152480254 - L1MC1 LINE L1 -2 6331 5672 22 35 0 0 chr3 75044402 75044431 -152480147 + AT_rich Low_complexity Low_complexity 1 29 0 1058 169 62 4 chr3 75044445 75044687 -152479891 - L1MA8 LINE L1 -3 6288 6033 242 179 143 0 chr3 75044698 75044754 -152479824 + MIR SINE MIR 184 247 -15 231 239 0 0 chr3 75046957 75047003 -152477575 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 613 266 49 35 chr3 75047610 75047813 -152476765 + L2 LINE L2 3108 3313 0 483 338 44 4 chr3 75047865 75048093 -152476485 + MIR SINE MIR 26 262 0 215 257 0 57 chr3 75048873 75048943 -152475635 - MIR SINE MIR -70 192 127 192 283 0 0 chr3 75049520 75049566 -152475012 + L2 LINE L2 3268 3313 0 5362 73 7 1 chr3 75050925 75051609 -152472969 + LTR12 LTR ERV1 1 688 0 825 261 5 20 chr3 75051723 75051918 -152472660 - MIR SINE MIR -51 211 20 22 35 0 0 chr3 75052253 75052282 -152472296 + AT_rich Low_complexity Low_complexity 1 29 0 203 179 26 0 chr3 75052711 75052750 -152471828 + MIR SINE MIR 72 111 -97 438 209 70 39 chr3 75054018 75054147 -152470431 + MER94 DNA DNA 2 134 0 396 299 19 0 chr3 75054202 75054309 -152470269 + MIR SINE MIR 20 128 -134 274 187 53 53 chr3 75054314 75054389 -152470189 - MIR SINE MIR -114 148 74 260 217 121 0 chr3 75055753 75055836 -152468742 - L1MCa LINE L1 -4198 2743 2651 447 156 0 0 chr3 75055976 75056053 -152468525 + L1ME3 LINE L1 6026 6102 -60 759 308 96 6 chr3 75057065 75057399 -152467179 + L2 LINE L2 2445 2808 -506 552 185 92 0 chr3 75057407 75057526 -152467052 - Charlie1 DNA MER1_type -7 2754 2625 228 274 0 0 chr3 75057591 75057664 -152466914 + L1MC4 LINE L1 6648 6720 -1322 * 1974 238 149 33 chr3 75057652 75058805 -152465773 - L1MCa LINE L1 -4238 2703 1417 582 297 26 19 chr3 75058814 75059080 -152465498 - L1MCa LINE L1 -5904 519 252 537 247 20 20 chr3 75059182 75059332 -152465246 - Charlie1 DNA MER1_type -2598 163 14 483 350 39 8 chr3 75059335 75059592 -152464986 + L2 LINE L2 2804 3068 -245 399 41 0 0 chr3 75060973 75061022 -152463556 + (TG)n Simple_repeat Simple_repeat 2 50 0 346 274 65 81 chr3 75061022 75061044 -152463534 - L2 LINE L2 0 3272 3251 1825 124 59 59 chr3 75061044 75061200 -152463378 + THE1C LTR MaLR 1 156 -219 2482 38 0 3 chr3 75061200 75061489 -152463089 - AluY SINE Alu -22 289 2 1825 124 59 59 chr3 75061489 75061703 -152462875 + THE1C LTR MaLR 155 371 -4 346 274 65 81 chr3 75061703 75061804 -152462774 - L2 LINE L2 -21 3251 3151 369 83 67 0 chr3 75062024 75062084 -152462494 + MLT2A1 LTR ERVL 339 402 -42 330 276 0 20 chr3 75062114 75062212 -152462366 + L1MC4 LINE L1 6607 6702 -1340 275 130 0 0 chr3 75062267 75062313 -152462265 + MLT2A2 LTR ERVL 400 445 -8 487 266 89 19 chr3 75062320 75062534 -152462044 + HAL1 LINE L1 666 894 -1613 281 237 145 0 chr3 75062542 75062618 -152461960 - MER7C DNA MER2_type 0 602 516 237 307 92 46 chr3 75062674 75062827 -152461751 - L2 LINE L2 -1015 2299 2140 2872 141 20 41 chr3 75062832 75063371 -152461207 - MER7C DNA MER2_type -74 528 1 216 67 0 0 chr3 75064159 75064189 -152460389 + (TC)n Simple_repeat Simple_repeat 2 31 0 186 103 0 0 chr3 75064189 75064218 -152460360 + (CA)n Simple_repeat Simple_repeat 1 29 0 671 260 101 14 chr3 75064218 75064426 -152460152 - MIR SINE MIR -26 236 11 228 91 0 0 chr3 75064431 75064464 -152460114 + MLT1D LTR MaLR 408 440 -65 2184 115 0 0 chr3 75064623 75064910 -152459668 + AluSx SINE Alu 16 302 -10 350 369 19 6 chr3 75065045 75065202 -152459376 + MIR3 SINE MIR 23 181 -27 206 293 0 27 chr3 75066383 75066458 -152458120 + GA-rich Low_complexity Low_complexity 1 73 0 256 235 62 0 chr3 75067546 75067627 -152456951 + L1MC4a LINE L1 5834 5919 -1889 226 244 0 0 chr3 75067776 75067821 -152456757 - MLT1J1 LTR MaLR -116 330 286 1860 174 0 7 chr3 75067945 75068238 -152456340 - AluJo SINE Alu -21 291 1 276 149 0 0 chr3 75068349 75068396 -152456182 + (CA)n Simple_repeat Simple_repeat 2 48 0 195 69 0 0 chr3 75068395 75068424 -152456154 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 180 364 97 14 chr3 75068622 75068839 -152455739 + L3 LINE CR1 529 763 -814 237 248 148 50 chr3 75069104 75069205 -152455373 - L2 LINE L2 -12 3260 3150 456 255 166 7 chr3 75069255 75069400 -152455178 + MER5A DNA MER1_type 20 187 -2 2145 128 7 0 chr3 75070626 75070930 -152453648 - AluSg SINE Alu -4 306 1 375 23 0 0 chr3 75071143 75071187 -152453391 + (CA)n Simple_repeat Simple_repeat 2 45 0 198 111 83 0 chr3 75072132 75072168 -152452410 + L2 LINE L2 3265 3303 -10 267 31 0 0 chr3 75072169 75072201 -152452377 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 287 269 0 21 chr3 75072387 75072480 -152452098 + GA-rich Low_complexity Low_complexity 1 91 0 275 336 29 0 chr3 75073676 75073780 -152450798 + L2 LINE L2 2606 2712 -602 888 177 78 0 chr3 75073780 75074012 -152450566 + L1MA9 LINE L1 6048 6297 -15 269 314 139 0 chr3 75074067 75074204 -152450374 + L2 LINE L2 2702 2857 -457 601 254 109 25 chr3 75074394 75074752 -152449826 + Charlie7 DNA MER1_type 348 735 -1877 279 277 170 11 chr3 75074933 75075027 -152449551 - MER5A DNA MER1_type -22 167 59 210 330 148 26 chr3 75074934 75075049 -152449529 + MER5A DNA MER1_type 35 163 -26 * 606 334 129 3 chr3 75075061 75075263 -152449315 - L2 LINE L2 0 3313 3138 1792 175 7 7 chr3 75075263 75075566 -152449012 + AluJo SINE Alu 1 303 -9 606 334 129 3 chr3 75075566 75075960 -152448618 - L2 LINE L2 -175 3138 2634 1995 125 0 17 chr3 75075988 75076298 -152448280 + AluY SINE Alu 1 305 0 2764 106 25 0 chr3 75078112 75078519 -152446059 + L1PA11 LINE L1 5757 6173 -1 22765 69 3 1 chr3 75078536 75081629 -152442949 + L1P LINE L1 3 3102 -3044 2512 83 0 14 chr3 75082371 75082733 -152441845 - L1PB1 LINE L1 0 6151 5795 270 176 0 0 chr3 75082748 75082799 -152441779 + (TA)n Simple_repeat Simple_repeat 1 51 0 2737 105 9 5 chr3 75082807 75083237 -152441341 - L1PB1 LINE L1 -359 5792 5361 569 209 35 100 chr3 75083265 75083495 -152441083 - MER20 DNA MER1_type -4 215 1 571 330 125 0 chr3 75085342 75085606 -152438972 + L2 LINE L2 2632 2928 -386 494 232 67 30 chr3 75085795 75085959 -152438619 - L2 LINE L2 -254 3059 2890 1827 155 47 0 chr3 75086994 75087290 -152437288 + AluSg SINE Alu 1 310 0 624 254 47 17 chr3 75087327 75087559 -152437019 + LTR33A LTR ERVL 285 523 0 192 266 114 38 chr3 75087574 75087653 -152436925 - MIR SINE MIR -107 101 17 249 229 0 0 chr3 75087673 75087721 -152436857 - L2 LINE L2 -4 3309 3262 245 262 0 0 chr3 75088296 75088357 -152436221 - MIR SINE MIR -81 127 67 21 0 0 0 chr3 75088796 75088817 -152435761 + AT_rich Low_complexity Low_complexity 1 21 0 675 266 101 40 chr3 75088985 75089496 -152435082 + MLT1G LTR MaLR 10 560 -7 486 264 73 93 chr3 75089655 75090094 -152434484 + MLT1K LTR MaLR 149 578 -10 1446 268 51 20 chr3 75090363 75090874 -152433704 - MLT1E LTR MaLR -37 556 30 471 276 203 16 chr3 75093016 75093208 -152431370 + MIR SINE MIR 16 243 -19 299 331 136 30 chr3 75093519 75093688 -152430890 - MIR3 SINE MIR -13 195 9 257 263 42 42 chr3 75094101 75094196 -152430382 + MIR SINE MIR 98 192 -70 356 307 13 53 chr3 75094836 75094986 -152429592 + L1M4c LINE L1 1698 1841 -4543 315 326 0 0 chr3 75095146 75095238 -152429340 + L1M4c LINE L1 1898 1989 -4574 1167 179 0 58 chr3 75095298 75095538 -152429040 - AluJo SINE Alu 0 312 87 3541 213 41 32 chr3 75095591 75096186 -152428392 + L1M4c LINE L1 2066 2654 -3728 2247 105 0 26 chr3 75096186 75096492 -152428086 + AluSx SINE Alu 1 298 -14 3541 213 41 32 chr3 75096492 75097302 -152427276 + L1M4c LINE L1 2654 3434 -2948 421 229 31 10 chr3 75097341 75097437 -152427141 + MLT1H LTR MaLR 75 172 -377 243 0 0 0 chr3 75097999 75098026 -152426552 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4502 42 2 13 chr3 75098028 75098581 -152425997 - L1PA7 LINE L1 -17 6137 5591 235 325 106 0 chr3 75098593 75098716 -152425862 - MIR3 SINE MIR -61 147 12 5775 175 45 10 chr3 75098855 75099995 -152424583 + ERVL-D LTR ERVL 4261 5440 -324 341 162 15 0 chr3 75099997 75100065 -152424513 + (TG)n Simple_repeat Simple_repeat 2 70 0 1612 166 25 19 chr3 75100157 75100482 -152424096 + ERVL-D LTR ERVL 5430 5756 -8 2026 134 115 5 chr3 75100482 75100814 -152423764 + MLT2D LTR ERVL 1 380 -34 483 18 0 0 chr3 75100814 75100870 -152423708 + (CA)n Simple_repeat Simple_repeat 2 57 0 2026 134 115 5 chr3 75100870 75100910 -152423668 + MLT2D LTR ERVL 380 414 0 458 218 64 9 chr3 75100911 75101021 -152423557 + MIR SINE MIR 101 216 -46 346 328 57 0 chr3 75101178 75101300 -152423278 + L2 LINE L2 3185 3313 0 3016 53 8 3 chr3 75101360 75101740 -152422838 - L1PA6 LINE L1 -4 6150 5769 10471 46 1 1 chr3 75101743 75103806 -152420772 - L1PA5 LINE L1 -8 6146 4085 10455 47 2 1 chr3 75103906 75105266 -152419312 - L1PA6 LINE L1 -1230 4916 3555 3070 173 42 3 chr3 75105253 75105854 -152418724 - L1P LINE L1 -5512 634 11 * 25 31 0 0 chr3 75106436 75106468 -152418110 + AT_rich Low_complexity Low_complexity 1 32 0 1174 249 136 57 chr3 75106954 75107460 -152417118 + MLT1H LTR MaLR 2 547 -2 21 0 0 0 chr3 75107541 75107562 -152417016 + AT_rich Low_complexity Low_complexity 1 21 0 497 305 47 21 chr3 75107615 75107851 -152416727 - MLT1K LTR MaLR -3 585 344 1959 152 14 75 chr3 75107853 75108281 -152416297 + MSTB LTR MaLR 1 402 -24 263 281 61 0 chr3 75108317 75108399 -152416179 - MLT1K LTR MaLR -308 280 194 303 278 51 41 chr3 75108526 75108624 -152415954 - MIR SINE MIR -110 98 32 2606 107 3 8 chr3 75109919 75110284 -152414294 + THE1B LTR MaLR 1 363 -1 335 227 31 49 chr3 75110327 75110490 -152414088 - L1ME4a LINE L1 0 6121 5962 22 0 0 0 chr3 75110659 75110681 -152413897 + AT_rich Low_complexity Low_complexity 1 22 0 526 224 17 69 chr3 75111354 75111520 -152413058 + MER5A DNA MER1_type 16 177 -1 23 33 0 0 chr3 75112631 75112661 -152411917 + AT_rich Low_complexity Low_complexity 1 30 0 31 76 0 0 chr3 75112820 75112886 -152411692 + AT_rich Low_complexity Low_complexity 1 66 0 394 266 56 19 chr3 75112889 75113103 -152411475 - L1ME4a LINE L1 -206 5915 5694 370 118 0 29 chr3 75113281 75113349 -152411229 + L1PA8 LINE L1 6100 6165 -7 415 311 114 71 chr3 75113498 75113894 -152410684 - L2 LINE L2 0 3272 2860 193 323 0 30 chr3 75114083 75114182 -152410396 + MIR SINE MIR 164 259 -3 248 314 119 37 chr3 75114199 75114367 -152410211 - MIR3 SINE MIR -68 194 15 1190 180 140 27 chr3 75114391 75114719 -152409859 - MLT1A1 LTR MaLR 0 365 1 481 284 206 5 chr3 75114905 75115109 -152409469 - MIR SINE MIR -7 255 11 461 297 110 0 chr3 75116053 75116208 -152408370 - MIR SINE MIR -9 253 82 459 318 5 30 chr3 75116351 75116549 -152408029 + L2 LINE L2 3118 3310 -3 307 261 0 57 chr3 75116742 75116830 -152407748 + MIR SINE MIR 65 147 -115 462 246 0 28 chr3 75116850 75116982 -152407596 + MLT1C LTR MaLR 263 466 -1 1151 251 78 44 chr3 75117355 75117421 -152407157 - L1ME3A LINE L1 -5 6165 6103 2188 100 3 20 chr3 75117421 75117722 -152406856 - AluSc SINE Alu -13 296 1 1151 251 78 44 chr3 75117722 75117892 -152406686 - L1ME3A LINE L1 -67 6103 5940 576 89 0 0 chr3 75117892 75117971 -152406607 - MADE1 DNA Mariner -1 79 1 1151 251 78 44 chr3 75117971 75118284 -152406294 - L1ME3A LINE L1 -230 5940 5596 536 227 13 0 chr3 75118298 75118452 -152406126 - L1ME3A LINE L1 -687 5475 5320 451 33 0 0 chr3 75119285 75119345 -152405233 + L1PA2 LINE L1 6092 6151 -4 213 39 0 0 chr3 75119350 75119376 -152405202 + (A)n Simple_repeat Simple_repeat 1 26 0 304 331 7 7 chr3 75119716 75119852 -152404726 + L1ME LINE L1 5631 5766 -355 27 49 0 0 chr3 75119907 75119948 -152404630 + AT_rich Low_complexity Low_complexity 1 41 0 2380 89 0 0 chr3 75120414 75120717 -152403861 + AluSq SINE Alu 1 303 -10 226 297 16 0 chr3 75120880 75120944 -152403634 - MIR SINE MIR -195 67 3 571 280 14 37 chr3 75120987 75121201 -152403377 + MIR SINE MIR 49 257 -5 528 238 150 0 chr3 75121590 75121750 -152402828 - MER5A DNA MER1_type -3 186 3 282 267 38 76 chr3 75121763 75121894 -152402684 - MER5B DNA MER1_type -3 175 50 433 289 114 14 chr3 75122060 75122271 -152402307 - MIR SINE MIR -4 258 27 234 0 0 0 chr3 75122278 75122304 -152402274 + (TTG)n Simple_repeat Simple_repeat 2 27 0 5725 95 7 4 chr3 75122313 75122693 -152401885 - L1PA10 LINE L1 -2 6166 5789 1862 132 11 0 chr3 75122693 75122965 -152401613 - AluSp SINE Alu -38 275 1 5725 95 7 4 chr3 75122965 75123426 -152401152 - L1PA10 LINE L1 -379 5789 5322 2940 208 44 26 chr3 75123436 75124214 -152400364 - L1ME1 LINE L1 -4 6162 5371 25 31 0 0 chr3 75124320 75124352 -152400226 + AT_rich Low_complexity Low_complexity 1 32 0 25 31 0 0 chr3 75124383 75124415 -152400163 + AT_rich Low_complexity Low_complexity 1 32 0 227 283 83 67 chr3 75124977 75125157 -152399421 - MIR SINE MIR -33 229 47 616 263 89 13 chr3 75125658 75125882 -152398696 - MIR SINE MIR -12 250 10 192 327 0 0 chr3 75126078 75126130 -152398448 + L2 LINE L2 3209 3260 -12 262 278 95 81 chr3 75126863 75127127 -152397451 - MLT1L LTR MaLR -60 550 260 213 121 0 0 chr3 75127238 75127271 -152397307 + (CA)n Simple_repeat Simple_repeat 2 34 0 1067 269 54 23 chr3 75127427 75127817 -152396761 + MLT1I LTR MaLR 8 409 0 456 269 144 6 chr3 75128782 75128949 -152395629 + MIR SINE MIR 72 261 -1 255 301 86 43 chr3 75129079 75129288 -152395290 - L2 LINE L2 -35 3237 3020 583 236 0 0 chr3 75129649 75129772 -152394806 - MER94 DNA DNA 0 134 12 802 87 0 0 chr3 75129846 75129950 -152394628 - AluY SINE Alu -10 301 198 21 36 0 0 chr3 75130907 75130935 -152393643 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr3 75132124 75132148 -152392430 + (T)n Simple_repeat Simple_repeat 1 24 0 682 268 11 38 chr3 75132599 75132782 -152391796 - MER5B DNA MER1_type 0 178 1 30 0 0 0 chr3 75134159 75134189 -152390389 + AT_rich Low_complexity Low_complexity 1 30 0 685 199 129 0 chr3 75134310 75134471 -152390107 - MER5A DNA MER1_type -1 188 4 288 316 13 17 chr3 75134558 75134755 -152389823 + MER5A DNA MER1_type 28 189 0 204 40 0 0 chr3 75135117 75135142 -152389436 + (CAGA)n Simple_repeat Simple_repeat 4 28 0 293 100 20 0 chr3 75135142 75135192 -152389386 + (ATAAG)n Simple_repeat Simple_repeat 3 53 0 402 301 122 18 chr3 75135569 75135798 -152388780 - MIR SINE MIR 0 262 10 921 232 74 137 chr3 75136659 75137054 -152387524 + MLT1L LTR MaLR 39 422 -166 956 286 79 50 chr3 75137061 75137477 -152387101 + MLT1J2 LTR MaLR 23 450 0 248 258 76 30 chr3 75137484 75137616 -152386962 + MLT1L LTR MaLR 471 608 -7 10618 80 9 1 chr3 75137775 75139893 -152384685 - L1PA7 LINE L1 -1 6153 4021 2193 116 12 114 chr3 75140205 75140610 -152383968 + THE1B LTR MaLR 1 364 0 848 250 37 20 chr3 75141061 75141305 -152383273 + MIR SINE MIR 2 249 -13 183 320 216 16 chr3 75141316 75141441 -152383137 + L2 LINE L2 3123 3272 0 495 241 143 15 chr3 75141891 75142024 -152382554 + MER5B DNA MER1_type 3 152 -26 430 186 85 0 chr3 75142038 75142156 -152382422 + L1ME4a LINE L1 5994 6121 0 390 138 96 12 chr3 75142331 75142413 -152382165 - MSTA LTR MaLR 0 428 287 40 21 0 0 chr3 75142417 75142464 -152382114 + AT_rich Low_complexity Low_complexity 1 47 0 1833 158 0 17 chr3 75142496 75142814 -152381764 - AluSx SINE Alu 0 313 1 1817 169 77 15 chr3 75142831 75143169 -152381409 - MSTA LTR MaLR -69 359 1 1907 212 30 28 chr3 75143523 75143957 -152380621 - Zaphod DNA AcHobo -1 4030 3596 26 93 0 0 chr3 75144063 75144138 -152380440 + AT_rich Low_complexity Low_complexity 1 75 0 1321 221 63 48 chr3 75144138 75144895 -152379683 - Zaphod DNA AcHobo -3136 895 72 640 75 0 28 chr3 75144943 75145049 -152379529 + (GGGAA)n Simple_repeat Simple_repeat 3 105 0 1316 206 151 29 chr3 75145176 75145560 -152379018 + L1MC4 LINE L1 7238 7668 -374 5191 159 30 41 chr3 75145627 75146582 -152377996 + L1PA16 LINE L1 4392 5326 -840 7833 29 5 0 chr3 75146582 75147457 -152377121 + L1PA4 LINE L1 5273 6151 -4 5191 159 30 41 chr3 75147457 75148289 -152376289 + L1PA16 LINE L1 5326 6166 0 624 282 28 6 chr3 75148312 75148493 -152376085 + L1MC4 LINE L1 7694 7878 -164 362 349 38 34 chr3 75148731 75148966 -152375612 - L2 LINE L2 0 3313 3078 800 340 37 12 chr3 75150810 75151242 -152373336 - MLT1K LTR MaLR -5 583 141 398 327 116 34 chr3 75152022 75152435 -152372143 - L1MEd LINE L1 -5104 1015 569 230 169 53 88 chr3 75152785 75152887 -152371691 - L1MEd LINE L1 -5954 165 21 2968 102 0 0 chr3 75153068 75153432 -152371146 + THE1B LTR MaLR 1 364 0 12487 34 3 0 chr3 75154407 75156603 -152367975 + L1PA4 LINE L1 3916 6116 -39 234 196 39 20 chr3 75156720 75156771 -152367807 + MIR SINE MIR 94 145 -117 5644 84 3 0 chr3 75156774 75157490 -152367088 + L1PA14 LINE L1 5431 6148 -13 1620 231 19 0 chr3 75157498 75157926 -152366652 + L1MC2 LINE L1 2955 3390 -2756 6063 160 19 3 chr3 75157941 75158984 -152365594 + L1MC2 LINE L1 5276 6335 -9 772 311 128 35 chr3 75159685 75160170 -152364408 - MLT1K LTR MaLR -51 537 8 529 325 50 69 chr3 75160268 75160545 -152364033 + L2 LINE L2 2971 3242 -30 959 291 8 90 chr3 75161921 75162652 -152361926 + L2 LINE L2 2412 3090 -182 198 0 0 0 chr3 75163559 75163581 -152360997 + (TA)n Simple_repeat Simple_repeat 1 22 0 235 333 73 30 chr3 75163942 75164107 -152360471 - LTR67 LTR ERVL -265 292 121 1248 286 27 27 chr3 75164148 75164324 -152360254 + LTR16A LTR ERVL 16 191 -259 3462 146 41 4 chr3 75164324 75164543 -152360035 - MER41C LTR ERV1 0 554 345 180 0 0 0 chr3 75164543 75164563 -152360015 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3462 146 41 4 chr3 75164563 75164877 -152359701 - MER41C LTR ERV1 -209 345 1 1248 286 27 27 chr3 75164877 75165112 -152359466 + LTR16A LTR ERVL 190 427 -23 577 316 65 14 chr3 75166022 75166237 -152358341 + MIR SINE MIR 21 246 -16 2384 161 40 0 chr3 75166611 75166989 -152357589 + MSTD LTR MaLR 4 396 0 250 363 30 0 chr3 75166997 75167113 -152357465 - MIR SINE MIR -61 147 28 2506 181 12 32 chr3 75167993 75168496 -152356082 + L1MB2 LINE L1 5671 6163 -8 396 0 0 0 chr3 75168496 75168540 -152356038 + (GA)n Simple_repeat Simple_repeat 1 44 0 566 230 123 5 chr3 75168693 75168880 -152355698 + LTR16B LTR ERVL 256 464 0 201 346 46 74 chr3 75168989 75169206 -152355372 + L2 LINE L2 3057 3267 -5 232 179 0 0 chr3 75169350 75169389 -152355189 - L2 LINE L2 -7 3306 3268 330 229 72 12 chr3 75170442 75170525 -152354053 + MIR3 SINE MIR 113 200 -8 249 386 44 12 chr3 75171982 75172143 -152352435 - MIR3 SINE MIR -54 154 19 2295 97 3 0 chr3 75172199 75172497 -152352081 + AluSp SINE Alu 1 299 -14 1172 305 40 41 chr3 75173669 75174226 -152350352 + MLT1K LTR MaLR 2 557 -31 420 269 11 0 chr3 75174263 75174356 -152350222 - L2 LINE L2 0 3272 3179 353 308 53 75 chr3 75175171 75175398 -152349180 + MIR SINE MIR 17 238 -24 484 339 56 0 chr3 75175515 75175710 -152348868 - MIR SINE MIR 0 262 57 303 317 18 39 chr3 75175743 75175927 -152348651 - MER5A DNA MER1_type -6 172 4 306 364 93 0 chr3 75178927 75179045 -152345533 + L2 LINE L2 3134 3262 -10 723 161 87 0 chr3 75180085 75180234 -152344344 + MER5B DNA MER1_type 17 178 0 263 229 267 9 chr3 75180442 75180547 -152344031 + L1ME3 LINE L1 5685 5816 -1992 842 241 70 111 chr3 75180563 75180681 -152343897 - L2 LINE L2 -18 3295 3174 956 236 6 0 chr3 75180681 75180855 -152343723 - MER45A DNA AcHobo -3 175 1 842 241 70 111 chr3 75180855 75180886 -152343692 - L2 LINE L2 -139 3174 3143 2180 68 4 0 chr3 75180886 75181150 -152343428 + AluSp SINE Alu 35 299 -14 842 241 70 111 chr3 75181150 75181397 -152343181 - L2 LINE L2 -170 3143 2914 251 319 8 17 chr3 75181462 75181581 -152342997 - L2 LINE L2 -598 2716 2599 279 0 0 0 chr3 75181782 75181813 -152342765 + (CA)n Simple_repeat Simple_repeat 2 32 0 1974 151 3 3 chr3 75184317 75184621 -152339957 + AluJb SINE Alu 4 307 -5 306 203 112 77 chr3 75184790 75184933 -152339645 - MIR SINE MIR -114 148 1 618 123 8 8 chr3 75184983 75185085 -152339493 - MER5A DNA MER1_type -83 106 4 237 132 0 0 chr3 75186589 75186627 -152337951 + (T)n Simple_repeat Simple_repeat 1 38 0 593 227 11 40 chr3 75189303 75189479 -152335099 + L1ME3 LINE L1 5992 6162 0 953 238 44 0 chr3 75190196 75190402 -152334176 - MER58A DNA MER1_type 0 224 10 202 188 0 0 chr3 75190897 75190929 -152333649 + polypurine Low_complexity Low_complexity 2 33 0 216 0 0 0 chr3 75191127 75191151 -152333427 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 26 0 0 0 chr3 75192062 75192088 -152332490 + AT_rich Low_complexity Low_complexity 1 26 0 427 216 111 33 chr3 75193095 75193248 -152331330 - L2 LINE L2 -8 3305 3141 682 267 91 62 chr3 75193294 75193680 -152330898 + MLT1F1 LTR MaLR 1 422 -145 332 296 10 20 chr3 75193684 75193782 -152330796 - L2 LINE L2 -34 3279 3183 221 351 107 18 chr3 75193787 75193955 -152330623 + MIR SINE MIR 24 206 -56 21 89 0 0 chr3 75194027 75194083 -152330495 + AT_rich Low_complexity Low_complexity 1 56 0 227 275 99 30 chr3 75195646 75195777 -152328801 - MER20B DNA MER1_type -594 189 50 803 130 0 8 chr3 75195851 75195974 -152328604 + FLAM_A SINE Alu 21 142 0 457 226 276 30 chr3 75197805 75198004 -152326574 + MIR SINE MIR 10 257 -5 201 259 17 17 chr3 75198000 75198058 -152326520 + MIR SINE MIR 58 115 -147 * 579 279 82 39 chr3 75198324 75198557 -152326021 + MIR SINE MIR 1 243 -19 648 272 42 19 chr3 75199318 75199531 -152325047 - MIR SINE MIR -7 255 38 1862 151 10 3 chr3 75201293 75201592 -152322986 - AluSx SINE Alu -11 301 1 800 93 0 9 chr3 75201956 75202063 -152322515 + AluY SINE Alu 188 293 -18 1501 160 3 60 chr3 75202422 75202740 -152321838 - AluJo SINE Alu -12 300 1 16229 119 25 18 chr3 75203009 75205409 -152319169 - Tigger1 DNA MER2_type -1 2417 1 2203 91 3 53 chr3 75206097 75206416 -152318162 - AluSg SINE Alu -7 303 1 413 216 28 150 chr3 75206699 75206725 -152317853 + MER53 DNA DNA 1 29 -160 219 69 0 0 chr3 75206725 75206754 -152317824 + (CAAG)n Simple_repeat Simple_repeat 1 29 0 413 216 28 150 chr3 75206754 75206940 -152317638 + MER53 DNA DNA 29 187 -2 2571 43 3 0 chr3 75207327 75207626 -152316952 - AluY SINE Alu -11 300 1 341 136 15 0 chr3 75207801 75207867 -152316711 + GA-rich Low_complexity Low_complexity 2 68 0 30 0 0 0 chr3 75210518 75210548 -152314030 + AT_rich Low_complexity Low_complexity 1 30 0 2368 107 0 0 chr3 75210814 75211122 -152313456 - AluSx SINE Alu -4 308 1 201 211 0 0 chr3 75211515 75211567 -152313011 + (CCG)n Simple_repeat Simple_repeat 2 53 0 1744 143 66 0 chr3 75212478 75212779 -152311799 - L1MB3 LINE L1 0 6183 5863 308 246 0 0 chr3 75214315 75214372 -152310206 - L2 LINE L2 -7 3265 3209 24 32 0 0 chr3 75214552 75214583 -152309995 + AT_rich Low_complexity Low_complexity 1 31 0 655 230 171 9 chr3 75214849 75215066 -152309512 + MIR SINE MIR 11 262 0 1672 182 22 62 chr3 75216578 75216800 -152307778 - MER2 DNA MER2_type 0 344 115 1740 173 23 0 chr3 75216800 75217101 -152307477 + AluJb SINE Alu 5 312 0 1672 182 22 62 chr3 75217101 75217119 -152307459 - MER2 DNA MER2_type -229 115 98 252 0 0 0 chr3 75217119 75217147 -152307431 + (TG)n Simple_repeat Simple_repeat 2 29 0 1672 182 22 62 chr3 75217147 75217263 -152307315 - MER2 DNA MER2_type -246 98 1 2305 75 7 10 chr3 75221173 75221481 -152303097 - AluSg SINE Alu -3 307 1 220 248 128 73 chr3 75227440 75227549 -152297029 - L2 LINE L2 0 3313 3199 2147 124 17 0 chr3 75227698 75227996 -152296582 + AluSx SINE Alu 1 303 -9 487 324 85 39 chr3 75228020 75228430 -152296148 - L2 LINE L2 -413 2901 2473 239 321 100 32 chr3 75230209 75230399 -152294179 + L2 LINE L2 3109 3311 -2 220 431 9 0 chr3 75230474 75230590 -152293988 + L2 LINE L2 3156 3272 0 1640 163 58 4 chr3 75230651 75230927 -152293651 + AluJo SINE Alu 1 291 -21 25 0 0 0 chr3 75231214 75231239 -152293339 + AT_rich Low_complexity Low_complexity 1 25 0 650 259 47 31 chr3 75233150 75233343 -152291235 - MLT1J LTR MaLR -313 198 3 296 351 61 22 chr3 75233448 75233676 -152290902 + MLT1K LTR MaLR 344 580 -8 217 288 0 0 chr3 75233683 75233742 -152290836 + GA-rich Low_complexity Low_complexity 2 60 0 274 274 109 22 chr3 75234598 75234812 -152289766 - L2 LINE L2 0 3313 3026 210 305 200 21 chr3 75235875 75236065 -152288513 - MIR SINE MIR -3 259 36 1037 172 0 0 chr3 75236105 75236268 -152288310 + FRAM SINE Alu 3 165 -11 288 141 16 31 chr3 75237538 75237602 -152286976 + MER5B DNA MER1_type 1 63 -115 512 162 71 0 chr3 75237603 75237702 -152286876 - MER53 DNA DNA -82 107 2 281 285 211 43 chr3 75237708 75237839 -152286739 - L2 LINE L2 -963 2351 2243 539 171 140 73 chr3 75237839 75238003 -152286575 - MER5B DNA MER1_type -3 175 1 281 285 211 43 chr3 75238003 75238331 -152286247 - L2 LINE L2 -1071 2243 1815 338 212 186 18 chr3 75238579 75238692 -152285886 + MIR SINE MIR 110 241 -21 255 235 29 0 chr3 75239291 75239359 -152285219 - MIR SINE MIR -46 216 147 468 162 0 81 chr3 75239716 75239757 -152284821 - MER20 DNA MER1_type 0 219 176 1726 154 128 21 chr3 75239757 75240094 -152284484 + THE1C LTR MaLR 3 375 0 468 162 0 81 chr3 75240094 75240151 -152284427 - MER20 DNA MER1_type -43 176 129 22 0 0 0 chr3 75240309 75240331 -152284247 + AT_rich Low_complexity Low_complexity 1 22 0 1541 185 31 21 chr3 75240735 75241022 -152283556 - AluJb SINE Alu -22 290 1 1598 146 0 0 chr3 75241033 75241279 -152283299 - L1MA5 LINE L1 -35 6265 6020 1059 296 91 58 chr3 75241352 75242078 -152282500 - HAL1 LINE L1 -407 2100 1351 1640 194 53 72 chr3 75242078 75242492 -152282086 - MLT1C LTR MaLR 0 467 62 4644 165 71 15 chr3 75242492 75243309 -152281269 - MER21B LTR ERV1 0 863 1 1640 194 53 72 chr3 75243309 75243363 -152281215 - MLT1C LTR MaLR -405 62 8 2345 118 31 33 chr3 75243442 75243831 -152280747 + MER41E LTR ERV1 1 388 -124 256 114 23 0 chr3 75243964 75244008 -152280570 - AluJ/FRAM SINE Alu -30 272 228 * 933 134 0 0 chr3 75244006 75244140 -152280438 + MER41E LTR ERV1 354 487 -25 1011 237 91 64 chr3 75244173 75244721 -152279857 - HAL1 LINE L1 -1165 1342 780 1438 188 65 24 chr3 75244798 75245090 -152279488 + AluJb SINE Alu 1 304 -8 1868 143 0 77 chr3 75246009 75246345 -152278233 - AluSx SINE Alu -2 310 1 266 172 11 32 chr3 75246537 75246630 -152277948 + (TA)n Simple_repeat Simple_repeat 1 91 0 7420 122 46 26 chr3 75246638 75247271 -152277307 - Tigger3b DNA MER2_type -1797 1231 561 2535 45 0 3 chr3 75247271 75247580 -152276998 + AluY SINE Alu 1 308 -3 7420 122 46 26 chr3 75247580 75248153 -152276425 - Tigger3b DNA MER2_type -2467 561 1 328 300 117 72 chr3 75249111 75249471 -152275107 + L1MEd LINE L1 22 397 -5722 345 260 98 70 chr3 75249754 75250142 -152274436 + L1MEd LINE L1 707 1105 -5014 1773 160 0 11 chr3 75250223 75250492 -152274086 + AluJb SINE Alu 9 274 -38 1234 66 8 4 chr3 75250494 75250739 -152273839 + (GAAA)n Simple_repeat Simple_repeat 1 246 0 572 288 128 35 chr3 75250776 75251259 -152273319 + L1MEd LINE L1 1171 1698 -4612 739 294 87 46 chr3 75251725 75252263 -152272315 + L2 LINE L2 2748 3305 -8 349 326 35 21 chr3 75252531 75252672 -152271906 + MIR3 SINE MIR 39 181 -27 495 316 61 20 chr3 75253608 75253855 -152270723 + MLT1J LTR MaLR 225 481 -30 1821 217 9 102 chr3 75253874 75254441 -152270137 - MLT2B1 LTR ERVL -6 514 1 412 294 65 0 chr3 75255339 75255492 -152269086 + MIR SINE MIR 77 239 -23 4605 88 7 0 chr3 75255578 75256177 -152268401 - L1PA14 LINE L1 0 6161 5559 249 299 26 51 chr3 75256513 75256630 -152267948 - L2 LINE L2 -1 3312 3199 2200 180 14 6 chr3 75257843 75258205 -152266373 - MLT1A1 LTR MaLR 0 365 1 229 282 55 18 chr3 75258218 75258328 -152266250 + (TCTCTG)n Simple_repeat Simple_repeat 1 114 0 650 211 127 0 chr3 75259772 75259914 -152264664 + MLT1E LTR MaLR 1 160 -433 968 239 83 0 chr3 75260009 75260214 -152264364 + MLT1E LTR MaLR 337 558 -35 275 237 17 0 chr3 75261019 75261078 -152263500 + L1MD1 LINE L1 5537 5596 -2212 1230 214 8 19 chr3 75261109 75261366 -152263212 + L1MDa LINE L1 1 254 -6286 2681 183 25 30 chr3 75261366 75261925 -152262653 + L1MD1 LINE L1 5682 6237 -5 1136 244 20 0 chr3 75262030 75262276 -152262302 - MIR SINE MIR 0 262 12 326 241 114 13 chr3 75262404 75262483 -152262095 + MER63 DNA MER1_type 689 775 -61 1358 206 91 115 chr3 75263090 75263517 -152261061 - MLT1E LTR MaLR 0 593 151 605 195 51 0 chr3 75263519 75263637 -152260941 - FRAM SINE Alu -15 161 38 588 266 7 13 chr3 75263639 75263793 -152260785 - MLT1E LTR MaLR -433 160 8 1435 162 3 118 chr3 75263923 75264263 -152260315 - AluSx SINE Alu -11 301 1 1223 227 185 18 chr3 75264269 75264755 -152259823 - L2 LINE L2 0 3313 2739 2086 140 0 0 chr3 75265050 75265365 -152259213 - AluSx SINE Alu 0 315 1 1140 185 34 0 chr3 75265684 75265889 -152258689 - MER20 DNA MER1_type -2 217 6 197 234 0 0 chr3 75265906 75265953 -152258625 + MIR SINE MIR 79 125 -137 191 189 0 0 chr3 75266141 75266178 -152258400 + L2 LINE L2 3269 3305 -8 200 219 0 0 chr3 75266338 75266379 -152258199 - MIR SINE MIR -5 257 217 288 277 252 0 chr3 75266696 75266815 -152257763 + MER117 DNA MER1_type 16 164 -33 1029 274 102 38 chr3 75266894 75267508 -152257070 + L2 LINE L2 2402 3313 0 1174 142 86 25 chr3 75267652 75267849 -152256729 - MER3 DNA MER1_type 0 209 1 2552 125 0 22 chr3 75268699 75269067 -152255511 + THE1B LTR MaLR 5 364 0 847 220 72 59 chr3 75270352 75270588 -152253990 + MIR SINE MIR 12 250 -12 431 311 43 12 chr3 75270859 75271020 -152253558 + MIR SINE MIR 36 201 -61 480 296 37 42 chr3 75271137 75271326 -152253252 - MIR3 SINE MIR 0 208 21 881 248 25 17 chr3 75271476 75271714 -152252864 + LTR16C LTR ERVL 252 491 0 180 125 0 0 chr3 75271757 75271789 -152252789 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 204 40 0 0 chr3 75271975 75272000 -152252578 + (CACAA)n Simple_repeat Simple_repeat 5 29 0 549 277 162 27 chr3 75273681 75274009 -152250569 - MLT1J1 LTR MaLR -7 439 68 2198 117 3 0 chr3 75274338 75274628 -152249950 - AluSx SINE Alu -21 291 1 211 184 0 0 chr3 75274639 75274677 -152249901 + MIR3 SINE MIR 161 198 -10 289 259 0 47 chr3 75274818 75274903 -152249675 + MLT1K LTR MaLR 401 481 -107 226 305 0 0 chr3 75275119 75275178 -152249400 + L2 LINE L2 3207 3265 -7 1898 135 17 7 chr3 75275206 75275495 -152249083 + AluSx SINE Alu 1 292 -20 373 283 42 101 chr3 75275510 75275747 -152248831 + MIR SINE MIR 2 224 -38 370 277 50 28 chr3 75276022 75276163 -152248415 + MIR SINE MIR 49 192 -70 1516 141 72 29 chr3 75276604 75276880 -152247698 + AluJb SINE Alu 23 310 -2 199 292 115 21 chr3 75276934 75277030 -152247548 - MIR SINE MIR -77 185 81 243 238 0 32 chr3 75278716 75278779 -152245799 + MIR SINE MIR 63 123 -139 1278 330 49 17 chr3 75278791 75279062 -152245516 - L2 LINE L2 -17 3296 3035 1168 168 53 5 chr3 75279062 75279271 -152245307 - MER20 DNA MER1_type 0 219 1 1278 330 49 17 chr3 75279271 75279950 -152244628 - L2 LINE L2 -278 3035 2306 186 229 0 0 chr3 75279955 75279990 -152244588 + L2 LINE L2 3218 3252 -20 2153 129 0 0 chr3 75280137 75280447 -152244131 - AluSx SINE Alu -2 310 1 1073 243 9 0 chr3 75281057 75281271 -152243307 - MER58A DNA MER1_type 0 224 9 1975 138 0 0 chr3 75281385 75281703 -152242875 + AluSx SINE Alu 1 312 0 1081 258 99 90 chr3 75281836 75282259 -152242319 - MLT1H LTR MaLR 0 549 123 241 232 36 0 chr3 75282863 75282919 -152241659 - MLT1K LTR MaLR -2 586 529 956 223 259 20 chr3 75283578 75283933 -152240645 - LTR16C LTR ERVL 0 491 52 272 325 113 30 chr3 75284042 75284245 -152240333 - L2 LINE L2 -655 2659 2440 316 318 109 17 chr3 75284430 75284732 -152239846 - L2 LINE L2 -563 2751 2422 355 191 12 12 chr3 75284803 75284887 -152239691 - MER53 DNA DNA 0 189 106 209 259 0 17 chr3 75285366 75285424 -152239154 + C-rich Low_complexity Low_complexity 4 60 0 1889 191 42 16 chr3 75285564 75285942 -152238636 + MLT1B LTR MaLR 1 388 -2 2012 126 63 0 chr3 75285964 75286265 -152238313 - MER2 DNA MER2_type -25 320 1 204 40 0 0 chr3 75286390 75286415 -152238163 + (CA)n Simple_repeat Simple_repeat 2 26 0 4645 217 92 8 chr3 75337101 75338280 -152186298 - L1MDa LINE L1 -5179 1361 84 344 286 12 89 chr3 75339067 75339235 -152185343 - MIR SINE MIR -42 220 66 450 269 9 9 chr3 75339661 75339769 -152184809 + L2 LINE L2 3206 3313 0 372 356 95 19 chr3 75339802 75340066 -152184512 + L2 LINE L2 3002 3285 -28 836 296 66 46 chr3 75340354 75340793 -152183785 - L2 LINE L2 -9 3304 2857 285 93 0 0 chr3 75340799 75340842 -152183736 + MADE1 DNA Mariner 1 43 -37 842 264 15 58 chr3 75340861 75340984 -152183594 - L2 LINE L2 -475 2839 2712 459 0 0 0 chr3 75340984 75341035 -152183543 + (CA)n Simple_repeat Simple_repeat 2 52 0 2115 118 3 0 chr3 75341044 75341332 -152183246 - AluSg SINE Alu -21 289 1 842 264 15 58 chr3 75341332 75341459 -152183119 - L2 LINE L2 -610 2704 2590 1257 267 135 4 chr3 75341459 75341912 -152182666 + MLT1G1 LTR MaLR 77 588 -7 690 293 29 29 chr3 75341998 75342244 -152182334 + MIR SINE MIR 15 260 -2 2153 133 10 7 chr3 75342606 75342914 -152181664 - AluSx SINE Alu -1 311 3 831 211 0 0 chr3 75343035 75343177 -152181401 + AluJb SINE Alu 142 283 -29 387 0 0 0 chr3 75343188 75343231 -152181347 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 704 229 182 0 chr3 75343813 75344093 -152180485 + L1ME3A LINE L1 4964 5294 -852 324 218 10 0 chr3 75344125 75344226 -152180352 + (TA)n Simple_repeat Simple_repeat 2 103 0 24 53 0 0 chr3 75345188 75345226 -152179352 + AT_rich Low_complexity Low_complexity 1 38 0 522 323 73 13 chr3 75345822 75346135 -152178443 + MLT1K LTR MaLR 22 353 -235 531 319 72 0 chr3 75346855 75347021 -152177557 - MER5A DNA MER1_type -6 183 6 503 248 22 0 chr3 75347291 75347428 -152177150 - Charlie8 DNA MER1_type -2179 238 99 935 221 98 0 chr3 75347479 75347683 -152176895 + MIR SINE MIR 15 238 -24 200 277 21 0 chr3 75347651 75347698 -152176880 + L2 LINE L2 3252 3299 -14 * 224 232 355 14 chr3 75347841 75347979 -152176599 + MIR SINE MIR 70 254 -8 198 0 0 0 chr3 75348199 75348221 -152176357 + (A)n Simple_repeat Simple_repeat 1 22 0 1847 113 38 9 chr3 75348844 75349164 -152175414 - L1PB2 LINE L1 -64 6087 5759 425 330 0 38 chr3 75349167 75349376 -152175202 + L2 LINE L2 2852 3052 -220 302 256 111 0 chr3 75349412 75349502 -152175076 + L2 LINE L2 3214 3313 0 914 184 0 0 chr3 75349680 75349859 -152174719 - L1MB3 LINE L1 -2 6181 6003 328 304 6 28 chr3 75350711 75350892 -152173686 + L1ME3A LINE L1 5307 5483 -2325 1811 220 121 4 chr3 75350893 75351388 -152173190 + MER68 LTR ERV1 1 553 -9 273 292 21 0 chr3 75351390 75351500 -152173078 + L1ME3A LINE L1 5476 5584 -788 396 285 162 11 chr3 75351596 75351775 -152172803 + L1ME3A LINE L1 5681 5886 -284 2231 99 3 0 chr3 75351841 75352135 -152172443 + AluY SINE Alu 1 295 -16 344 279 9 18 chr3 75352384 75352495 -152172083 + CT-rich Low_complexity Low_complexity 4 113 0 438 269 71 28 chr3 75353310 75353492 -152171086 - MIR SINE MIR -72 190 1 1635 181 17 20 chr3 75353803 75354095 -152170483 + AluJo SINE Alu 1 291 -21 1804 120 70 67 chr3 75354107 75354415 -152170163 + THE1C LTR MaLR 1 312 -63 2007 122 7 3 chr3 75354415 75354718 -152169860 - AluSg SINE Alu -6 304 1 1804 120 70 67 chr3 75354718 75354783 -152169795 + THE1C LTR MaLR 312 375 0 270 0 0 0 chr3 75355378 75355408 -152169170 + (TG)n Simple_repeat Simple_repeat 2 31 0 23 0 0 0 chr3 75356531 75356554 -152168024 + AT_rich Low_complexity Low_complexity 1 23 0 325 263 38 0 chr3 75356566 75356646 -152167932 - L2 LINE L2 -1 3312 3230 272 308 81 50 chr3 75356886 75357084 -152167494 + MIR SINE MIR 17 220 -42 765 151 27 49 chr3 75357084 75357323 -152167255 - MER106B DNA MER1_type -1 1058 1 1763 184 3 0 chr3 75357944 75358237 -152166341 + AluJb SINE Alu 5 298 -14 206 246 45 91 chr3 75358402 75358512 -152166066 + MIR SINE MIR 115 219 -43 216 111 0 0 chr3 75358569 75358605 -152165973 + (CA)n Simple_repeat Simple_repeat 2 37 0 319 339 0 27 chr3 75358775 75358957 -152165621 + MIR SINE MIR 6 261 -1 2120 132 0 0 chr3 75359164 75359453 -152165125 - AluSx SINE Alu -6 306 18 180 227 53 53 chr3 75360941 75361016 -152163562 - MIR3 SINE MIR -3 205 131 598 186 0 0 chr3 75361649 75361772 -152162806 - AluSg/x SINE Alu 0 324 202 238 307 80 0 chr3 75361777 75361852 -152162726 + MER91C DNA MER1_type 60 140 0 31 68 0 0 chr3 75363459 75363518 -152161060 + AT_rich Low_complexity Low_complexity 1 59 0 23 68 0 0 chr3 75363725 75363769 -152160809 + AT_rich Low_complexity Low_complexity 1 44 0 1706 182 0 7 chr3 75364207 75364504 -152160074 + AluJb SINE Alu 1 295 -17 316 281 193 21 chr3 75364986 75365313 -152159265 - L1ME4a LINE L1 -205 5916 5534 2111 105 0 36 chr3 75365388 75365694 -152158884 + AluSx SINE Alu 1 295 -17 253 266 0 32 chr3 75365781 75365875 -152158703 - L1ME LINE L1 -487 5634 5544 639 245 97 10 chr3 75366253 75366449 -152158129 - MER58A DNA MER1_type 0 224 12 873 216 0 26 chr3 75366582 75366776 -152157802 + MER5A DNA MER1_type 1 189 0 462 255 186 20 chr3 75367662 75367866 -152156712 - MIR SINE MIR -10 252 15 659 280 64 4 chr3 75368097 75368333 -152156245 + MIR SINE MIR 7 256 -6 254 302 85 28 chr3 75368482 75368730 -152155848 + L1MC4 LINE L1 7781 8042 0 25 0 0 0 chr3 75368732 75368757 -152155821 + AT_rich Low_complexity Low_complexity 1 25 0 1751 156 0 0 chr3 75368763 75369019 -152155559 - AluSg SINE Alu -54 256 1 345 47 0 0 chr3 75370353 75370396 -152154182 + (CA)n Simple_repeat Simple_repeat 2 44 0 1720 181 7 4 chr3 75370926 75371275 -152153303 + AluJb SINE Alu 1 350 0 341 250 88 15 chr3 75371413 75371549 -152153029 + L2 LINE L2 3039 3184 -129 789 201 62 11 chr3 75371708 75371887 -152152691 + MIR SINE MIR 13 200 -62 1105 138 5 51 chr3 75372193 75372254 -152152324 - AluJo SINE Alu -117 195 133 2312 107 10 0 chr3 75372254 75372563 -152152015 - AluSx SINE Alu 0 312 1 1105 138 5 51 chr3 75372563 75372697 -152151881 - AluJo SINE Alu -179 133 9 632 244 58 9 chr3 75372710 75373000 -152151578 - L1ME LINE L1 -731 5431 5127 199 333 75 11 chr3 75373048 75373141 -152151437 + MIR3 SINE MIR 5 103 -105 859 222 5 0 chr3 75373143 75373341 -152151237 + MLT2B1 LTR ERVL 1 199 -321 1117 61 0 0 chr3 75373377 75373509 -152151069 + AluSp SINE Alu 1 132 -181 417 103 5 88 chr3 75373924 75374118 -152150460 + (TA)n Simple_repeat Simple_repeat 1 178 0 214 175 18 18 chr3 75374156 75374213 -152150365 + (CATA)n Simple_repeat Simple_repeat 2 58 0 320 83 10 104 chr3 75374266 75374458 -152150120 + (TA)n Simple_repeat Simple_repeat 1 174 0 397 330 113 28 chr3 75374476 75374688 -152149890 + MIR SINE MIR 12 241 -21 349 217 8 145 chr3 75374921 75375170 -152149408 - L1MC4 LINE L1 -15 8027 7813 23 0 0 0 chr3 75375435 75375458 -152149120 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr3 75375721 75375755 -152148823 + AT_rich Low_complexity Low_complexity 1 34 0 493 276 39 83 chr3 75375790 75376044 -152148534 + MIR SINE MIR 20 262 0 337 214 0 0 chr3 75376725 75376795 -152147783 - MIR SINE MIR -130 132 63 428 345 114 0 chr3 75377020 75377240 -152147338 + MIR SINE MIR 4 248 -14 229 318 100 0 chr3 75377298 75377408 -152147170 + MIR SINE MIR 94 214 -48 1163 155 11 0 chr3 75377556 75377743 -152146835 + AluJo SINE Alu 123 311 -1 669 271 30 23 chr3 75378188 75378454 -152146124 + MER20B DNA MER1_type 26 293 -490 335 340 121 58 chr3 75380510 75380925 -152143653 - L2 LINE L2 -1 3271 2831 364 240 194 10 chr3 75381334 75381470 -152143108 + MIR SINE MIR 34 192 -70 345 232 48 27 chr3 75381481 75381626 -152142952 - MIR SINE MIR -65 143 16 355 139 13 51 chr3 75381777 75381856 -152142722 + L1MB7 LINE L1 6109 6184 0 275 267 11 22 chr3 75383030 75383120 -152141458 + MIR SINE MIR 95 183 -79 194 233 0 0 chr3 75383208 75383251 -152141327 + MIR SINE MIR 111 153 -109 357 358 95 0 chr3 75384305 75384495 -152140083 - MIR SINE MIR -10 252 45 216 0 0 0 chr3 75384610 75384634 -152139944 + (CA)n Simple_repeat Simple_repeat 1 24 0 255 364 56 0 chr3 75385071 75385214 -152139364 + L1ME2 LINE L1 5515 5665 -2143 2116 137 0 16 chr3 75385245 75385559 -152139019 - AluSx SINE Alu -3 309 1 195 42 0 0 chr3 75385945 75385969 -152138609 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2170 232 35 43 chr3 75386645 75387364 -152137214 + L1ME1 LINE L1 5314 6026 -140 1904 151 10 0 chr3 75387571 75387862 -152136716 - AluSx SINE Alu -18 294 1 328 268 21 0 chr3 75387874 75387971 -152136607 + L1ME2 LINE L1 6052 6150 -14 678 247 67 40 chr3 75388090 75388332 -152136246 + MIR SINE MIR 19 261 -1 234 262 33 0 chr3 75388571 75388632 -152135946 - L2 LINE L2 -4 3268 3206 1868 181 3 0 chr3 75389010 75389309 -152135269 - AluJo SINE Alu -8 304 5 1774 167 42 6 chr3 75389718 75390053 -152134525 + MER7A DNA MER2_type 1 345 -1 360 0 0 0 chr3 75390175 75390215 -152134363 + (T)n Simple_repeat Simple_repeat 1 40 0 2140 128 3 7 chr3 75390356 75390660 -152133918 - AluSx SINE Alu -9 303 1 22 56 0 0 chr3 75390671 75390707 -152133871 + AT_rich Low_complexity Low_complexity 1 36 0 271 203 25 13 chr3 75391766 75391845 -152132733 - MER116 DNA Mariner 0 80 1 194 267 122 11 chr3 75391880 75391970 -152132608 + MIR SINE MIR 1 100 -162 191 284 15 15 chr3 75392157 75392224 -152132354 + MIR SINE MIR 172 238 -24 277 257 20 69 chr3 75392247 75392348 -152132230 + MIR SINE MIR 96 191 -71 272 220 18 92 chr3 75393038 75393147 -152131431 + MER102b DNA MER1_type 238 338 -3 299 101 14 101 chr3 75394189 75394258 -152130320 + MER106B DNA MER1_type 1 63 -996 379 323 15 8 chr3 75394684 75394817 -152129761 + L2 LINE L2 3180 3313 0 390 298 44 32 chr3 75395170 75395328 -152129250 + MIR SINE MIR 79 238 -24 195 291 45 45 chr3 75395429 75395563 -152129015 - MIR SINE MIR -9 253 120 332 312 39 74 chr3 75396612 75396843 -152127735 + L2 LINE L2 2370 2592 -722 230 196 78 0 chr3 75396864 75396915 -152127663 - MER53 DNA DNA -133 56 2 205 267 8 108 chr3 75397030 75397150 -152127428 + L2 LINE L2 3147 3254 -59 195 293 93 13 chr3 75397250 75397325 -152127253 + MIR SINE MIR 61 141 -67 404 227 186 41 chr3 75397655 75397827 -152126751 - MER3 DNA MER1_type -8 201 5 2051 142 7 13 chr3 75398101 75398410 -152126168 - AluSx SINE Alu -5 307 1 1819 142 0 11 chr3 75398460 75398741 -152125837 - AluJb SINE Alu -33 279 2 822 271 15 5 chr3 75398784 75398987 -152125591 + MIR SINE MIR 20 224 -38 191 339 26 52 chr3 75399027 75399142 -152125436 + L2 LINE L2 3193 3304 -9 306 216 18 144 chr3 75399297 75399346 -152125232 + L1MC4a LINE L1 5741 5795 -2013 198 71 0 0 chr3 75399346 75399374 -152125204 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 306 216 18 144 chr3 75399374 75399491 -152125087 + L1MC4a LINE L1 5795 5886 -1922 742 237 66 24 chr3 75399921 75400132 -152124446 - MIR SINE MIR -20 242 23 2244 100 3 7 chr3 75400333 75400643 -152123935 + AluSc SINE Alu 1 309 0 377 287 52 58 chr3 75400933 75401107 -152123471 + MIR SINE MIR 20 192 -70 602 271 62 50 chr3 75402081 75402420 -152122158 + L1MC4a LINE L1 5613 5955 -1853 21 0 0 0 chr3 75402561 75402582 -152121996 + AT_rich Low_complexity Low_complexity 1 21 0 2424 43 0 0 chr3 75402587 75402865 -152121713 + AluY SINE Alu 22 299 -12 640 256 70 5 chr3 75404897 75405096 -152119482 + MIR SINE MIR 1 212 -50 215 222 0 0 chr3 75405192 75405237 -152119341 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 670 308 109 47 chr3 75405256 75405806 -152118772 - L2 LINE L2 -4 3309 2708 1780 177 7 7 chr3 75405806 75406111 -152118467 - AluJo SINE Alu -7 305 1 670 308 109 47 chr3 75406111 75406288 -152118290 - L2 LINE L2 -605 2708 2543 260 153 0 42 chr3 75406362 75406434 -152118144 - L1PA10 LINE L1 -99 6069 6001 695 171 64 32 chr3 75406437 75406613 -152117965 + L1PA10 LINE L1 5991 6167 -1 1330 266 50 50 chr3 75406643 75407181 -152117397 - L2 LINE L2 -777 2537 2000 722 239 49 53 chr3 75408243 75408490 -152116088 - MIR SINE MIR 0 262 17 877 201 55 5 chr3 75408490 75408689 -152115889 + MER3 DNA MER1_type 1 209 0 2016 93 96 0 chr3 75409144 75409414 -152115164 + AluY SINE Alu 1 296 -15 1906 119 87 0 chr3 75410975 75411252 -152113326 + AluSg1 SINE Alu 1 301 -8 2001 228 98 19 chr3 75411286 75411936 -152112642 + L1ME1 LINE L1 5442 6143 -23 593 249 102 12 chr3 75411936 75412181 -152112397 + MER113 DNA MER1_type? 125 391 -130 345 183 0 0 chr3 75412181 75412241 -152112337 - MLT1A1 LTR MaLR 0 374 315 561 200 0 0 chr3 75412263 75412358 -152112220 + FLAM_A SINE Alu 12 106 -36 560 254 65 22 chr3 75412360 75412545 -152112033 - MLT1A1 LTR MaLR -125 240 48 260 283 61 77 chr3 75413899 75414089 -152110489 + MIR3 SINE MIR 14 197 -59 754 201 45 0 chr3 75414175 75414329 -152110249 - MIR SINE MIR -55 207 47 21 0 0 0 chr3 75415213 75415234 -152109344 + AT_rich Low_complexity Low_complexity 1 21 0 1123 172 10 20 chr3 75415251 75415454 -152109124 + AluJb SINE Alu 68 268 -44 279 0 0 0 chr3 75415459 75415490 -152109088 + (TAA)n Simple_repeat Simple_repeat 2 32 0 640 251 0 0 chr3 75415490 75415661 -152108917 + L1MB7 LINE L1 6005 6175 -9 806 254 66 0 chr3 75415939 75416136 -152108442 + MIR SINE MIR 32 241 -21 181 233 23 0 chr3 75417226 75417269 -152107309 + MIR SINE MIR 160 203 -59 2491 67 0 3 chr3 75417943 75418255 -152106323 + AluY SINE Alu 1 311 0 40755 34 22 1 chr3 75419114 75425136 -152099442 + L1PA2 LINE L1 2 6149 -6 635 216 0 9 chr3 75425878 75425994 -152098584 + FLAM_A SINE Alu 1 115 -18 2119 112 3 0 chr3 75426010 75426296 -152098282 - AluSc SINE Alu -22 287 1 326 302 91 52 chr3 75426392 75426538 -152098040 - MIR SINE MIR -15 247 87 2789 7 0 3 chr3 75426538 75426847 -152097731 - AluYa5 SINE Alu -3 308 1 326 302 91 52 chr3 75426847 75426932 -152097646 - MIR SINE MIR -175 87 7 619 298 38 72 chr3 75426945 75427237 -152097341 + L2 LINE L2 2863 3144 -169 417 238 260 17 chr3 75427238 75427469 -152097109 + LTR50 LTR ERVL 3 289 -506 486 278 39 0 chr3 75427510 75427690 -152096888 + LTR50 LTR ERVL 496 682 -113 297 221 15 0 chr3 75427691 75427759 -152096819 + LTR33A LTR ERVL 443 511 -12 394 257 22 15 chr3 75429162 75429298 -152095280 + MER103 DNA DNA 10 146 -20 195 293 12 24 chr3 75429537 75429619 -152094959 + L2 LINE L2 2703 2783 -531 235 312 20 111 chr3 75429918 75430117 -152094461 + L2 LINE L2 3006 3186 -86 216 216 0 39 chr3 75430410 75430461 -152094117 + GA-rich Low_complexity Low_complexity 4 52 0 240 213 11 21 chr3 75431025 75431119 -152093459 + GA-rich Low_complexity Low_complexity 1 93 0 2020 117 26 58 chr3 75434299 75434445 -152090133 + AluSx SINE Alu 1 133 -179 2260 98 3 25 chr3 75434445 75434763 -152089815 + AluY SINE Alu 1 311 0 2020 117 26 58 chr3 75434763 75434925 -152089653 + AluSx SINE Alu 133 299 -13 348 308 25 31 chr3 75435523 75435682 -152088896 + MIR SINE MIR 94 251 -11 1592 210 3 3 chr3 75435764 75436050 -152088528 + AluJo SINE Alu 1 286 -26 25 31 0 0 chr3 75436111 75436143 -152088435 + AT_rich Low_complexity Low_complexity 1 32 0 2226 169 57 53 chr3 75436194 75436737 -152087841 - L1MB5 LINE L1 -1 6173 5629 203 226 39 0 chr3 75436747 75436849 -152087729 + (TA)n Simple_repeat Simple_repeat 1 106 0 1337 164 13 17 chr3 75437367 75437605 -152086973 + AluJo SINE Alu 38 274 -38 398 20 20 0 chr3 75437611 75437662 -152086916 + (TG)n Simple_repeat Simple_repeat 2 53 0 302 307 23 0 chr3 75437664 75437752 -152086826 - L1MC4 LINE L1 -1339 6703 6614 * 305 299 23 0 chr3 75437732 75437819 -152086759 + L1MC4 LINE L1 6614 6702 -1340 * 321 298 0 0 chr3 75437757 75437841 -152086737 - L1MC4 LINE L1 -1344 6698 6615 348 284 164 38 chr3 75437891 75438074 -152086504 + MIR SINE MIR 28 233 -29 426 281 35 53 chr3 75438183 75438354 -152086224 + L2 LINE L2 2176 2343 -971 364 204 71 0 chr3 75438365 75438463 -152086115 + L1MD3 LINE L1 7881 7985 -10 22 0 0 0 chr3 75438463 75438485 -152086093 + AT_rich Low_complexity Low_complexity 1 22 0 847 275 20 25 chr3 75438668 75438912 -152085666 + MIR SINE MIR 6 248 -14 488 313 144 61 chr3 75438954 75439350 -152085228 + L2 LINE L2 2523 2951 -363 616 325 52 37 chr3 75439350 75439753 -152084825 + MLT1J LTR MaLR 1 409 -102 200 281 37 24 chr3 75439818 75439900 -152084678 + L2 LINE L2 2949 3031 -282 252 354 40 0 chr3 75440230 75440329 -152084249 - L2 LINE L2 -16 3256 3154 506 196 40 98 chr3 75440962 75441135 -152083443 + MLT1F1 LTR MaLR 350 512 -55 1711 164 3 31 chr3 75441212 75441504 -152083074 + AluJo SINE Alu 14 297 -15 180 173 0 115 chr3 75441648 75441700 -152082878 + MIR SINE MIR 216 261 -1 246 250 28 28 chr3 75442319 75442391 -152082187 + MIR3 SINE MIR 119 190 -18 838 281 66 41 chr3 75443606 75443998 -152080580 + MLT1K LTR MaLR 133 534 -54 2022 112 3 56 chr3 75444841 75445163 -152079415 + AluSq SINE Alu 8 312 -1 297 326 111 12 chr3 75446702 75446874 -152077704 + MIR SINE MIR 25 213 -49 598 240 116 60 chr3 75447019 75447286 -152077292 + L2 LINE L2 3032 3313 0 14535 83 4 6 chr3 75447880 75450699 -152073879 + L1PA7 LINE L1 3312 6151 -3 307 274 48 55 chr3 75450844 75450990 -152073588 + L1ME4a LINE L1 5960 6104 -17 1896 196 14 23 chr3 75451081 75451509 -152073069 - MER90 LTR ERV1 -19 595 172 348 24 0 0 chr3 75452761 75452802 -152071776 + (CA)n Simple_repeat Simple_repeat 1 41 0 252 333 29 9 chr3 75453005 75453110 -152071468 - L2 LINE L2 -43 3270 3164 262 244 26 26 chr3 75453706 75453784 -152070794 + (TATG)n Simple_repeat Simple_repeat 3 80 0 229 138 0 138 chr3 75453908 75453973 -152070605 - MIR SINE MIR 0 262 207 370 294 159 10 chr3 75454377 75454578 -152070000 + MIR SINE MIR 16 246 -16 2194 111 10 0 chr3 75455296 75455603 -152068975 - AluSx SINE Alu -1 311 2 1408 163 40 99 chr3 75456409 75456832 -152067746 + L1MD3 LINE L1 7596 7993 -2 326 220 46 46 chr3 75456845 75456954 -152067624 - L2 LINE L2 0 3313 3205 1763 140 30 10 chr3 75457246 75457546 -152067032 + AluJb SINE Alu 1 306 -6 594 344 136 32 chr3 75458132 75458741 -152065837 + L2 LINE L2 2376 3063 -209 1325 226 154 60 chr3 75458756 75459258 -152065320 + MLT1F LTR MaLR 13 565 -2 509 150 0 50 chr3 75460082 75460182 -152064396 + FLAM_A SINE Alu 45 139 -3 315 250 26 13 chr3 75460375 75460451 -152064127 + MER5A DNA MER1_type 66 142 -47 22 70 0 0 chr3 75461127 75461170 -152063408 + AT_rich Low_complexity Low_complexity 1 43 0 592 313 30 35 chr3 75461219 75461424 -152063154 - MIR SINE MIR -8 254 49 1731 176 7 3 chr3 75461424 75461725 -152062853 + AluJb SINE Alu 1 302 -10 592 313 30 35 chr3 75461725 75461749 -152062829 - MIR SINE MIR -213 49 26 812 109 117 0 chr3 75461977 75462114 -152062464 + L1MA2 LINE L1 6152 6304 0 278 316 21 11 chr3 75463269 75463364 -152061214 - MIR3 SINE MIR -7 201 106 1513 135 33 99 chr3 75463533 75463896 -152060682 + MER44D DNA MER2_type 1 609 0 455 264 104 0 chr3 75463927 75464090 -152060488 - MER104 DNA MER2_type 0 180 1 839 213 0 0 chr3 75464156 75464311 -152060267 - FRAM SINE Alu -10 166 12 28 0 0 0 chr3 75464877 75464905 -152059673 + AT_rich Low_complexity Low_complexity 1 28 0 1049 244 94 23 chr3 75465001 75465309 -152059269 + MLT1F LTR MaLR 9 338 -204 428 301 20 14 chr3 75465318 75465464 -152059114 + MIR SINE MIR 37 183 -79 214 238 0 0 chr3 75465613 75465655 -152058923 + MIR SINE MIR 215 256 -6 186 43 0 0 chr3 75466247 75466270 -152058308 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2382 102 0 0 chr3 75467244 75467548 -152057030 + AluSx SINE Alu 1 304 -8 2233 100 10 0 chr3 75467651 75467942 -152056636 + AluSg SINE Alu 9 302 -8 243 0 0 0 chr3 75468285 75468312 -152056266 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 508 118 0 0 chr3 75468487 75468563 -152056015 - AluS SINE Alu -235 76 1 21 0 0 0 chr3 75469109 75469130 -152055448 + AT_rich Low_complexity Low_complexity 1 21 0 2061 148 3 0 chr3 75469221 75469526 -152055052 + AluSx SINE Alu 1 306 -6 21 0 0 0 chr3 75469944 75469965 -152054613 + AT_rich Low_complexity Low_complexity 1 21 0 194 267 67 0 chr3 75470270 75470330 -152054248 - L2 LINE L2 0 3272 3209 298 259 12 25 chr3 75470609 75470690 -152053888 + Charlie8 DNA MER1_type 10 89 -2328 2382 144 44 0 chr3 75470701 75471130 -152053448 + L1MB3 LINE L1 5734 6181 -2 1782 158 21 14 chr3 75471264 75471555 -152053023 + AluJo SINE Alu 4 296 -16 1934 169 3 0 chr3 75471720 75472068 -152052510 - AluSx SINE Alu 0 312 1 567 228 5 69 chr3 75472236 75472425 -152052153 + L1MC5 LINE L1 7721 7897 -64 260 327 160 0 chr3 75473359 75473509 -152051069 + L3 LINE CR1 519 692 -885 371 325 80 11 chr3 75473810 75473998 -152050580 - MIR SINE MIR -16 246 46 252 319 53 0 chr3 75474190 75474284 -152050294 + L3 LINE CR1 1440 1538 -39 182 299 86 26 chr3 75474356 75474473 -152050105 - MIR SINE MIR -56 206 83 1525 237 12 68 chr3 75474903 75475489 -152049089 + L1ME1 LINE L1 3672 4224 -1922 600 143 91 97 chr3 75475520 75475695 -152048883 + MER58B DNA MER1_type 168 341 0 577 124 0 172 chr3 75475842 75476011 -152048567 - L1PA15 LINE L1 0 6165 6026 2592 230 81 37 chr3 75476034 75477747 -152046831 + L1ME1 LINE L1 4382 6161 -5 194 356 0 78 chr3 75478331 75478446 -152046132 + L2 LINE L2 3004 3109 -163 193 295 192 0 chr3 75478482 75478560 -152046018 + MIR SINE MIR 110 202 -60 421 283 80 0 chr3 75478564 75478677 -152045901 + L2 LINE L2 3188 3309 -4 1276 201 121 21 chr3 75478850 75479229 -152045349 - MER96B DNA MER1_type 0 417 1 203 158 0 0 chr3 75479590 75479628 -152044950 + CT-rich Low_complexity Low_complexity 1 38 0 1873 152 0 3 chr3 75480304 75480587 -152043991 + AluSx SINE Alu 1 282 -30 336 24 0 0 chr3 75480590 75480631 -152043947 + (GA)n Simple_repeat Simple_repeat 2 42 0 227 287 140 28 chr3 75480817 75480960 -152043618 - MIR3 SINE MIR -9 199 41 2205 104 0 3 chr3 75481230 75481529 -152043049 + AluSq SINE Alu 1 298 -15 265 211 0 0 chr3 75481665 75481717 -152042861 + L2 LINE L2 3201 3252 -61 940 281 36 116 chr3 75482507 75483629 -152040949 + L2 LINE L2 2285 3304 -9 195 274 20 0 chr3 75483714 75483765 -152040813 + MIR3 SINE MIR 133 184 -24 432 233 67 17 chr3 75483806 75483926 -152040652 + L2 LINE L2 3186 3311 -2 1032 194 102 10 chr3 75484579 75484873 -152039705 - MER33 DNA MER1_type 0 324 4 180 0 0 0 chr3 75485754 75485774 -152038804 + (A)n Simple_repeat Simple_repeat 1 20 0 345 315 35 28 chr3 75486494 75486637 -152037941 - L2 LINE L2 0 3272 3129 562 276 128 5 chr3 75486674 75486877 -152037701 - MIR SINE MIR 0 262 35 1633 232 35 108 chr3 75486992 75487592 -152036986 + L1MC4 LINE L1 5302 5817 -2225 1680 181 3 7 chr3 75487592 75487885 -152036693 + AluJb SINE Alu 1 292 -20 1633 232 35 108 chr3 75487885 75488176 -152036402 + L1MC4 LINE L1 5817 6128 -1914 1663 113 88 3 chr3 75488830 75489114 -152035464 - MER47A DNA MER2_type 0 366 59 2017 149 10 3 chr3 75489138 75489447 -152035131 - AluJb SINE Alu -1 311 1 291 289 35 26 chr3 75490224 75490338 -152034240 + MIR3 SINE MIR 93 207 -1 430 312 88 8 chr3 75490364 75490489 -152034089 + L2 LINE L2 3136 3270 -2 767 259 27 27 chr3 75491255 75491479 -152033099 - MER58A DNA MER1_type 0 224 1 473 324 83 74 chr3 75491670 75492006 -152032572 + L2 LINE L2 2898 3236 -36 459 289 52 16 chr3 75492557 75492770 -152031808 + L1ME LINE L1 5514 5700 -421 1396 274 60 62 chr3 75492855 75493838 -152030740 + L2 LINE L2 2332 3313 0 415 204 39 39 chr3 75494687 75494790 -152029788 + L2 LINE L2 3195 3297 -16 238 231 58 0 chr3 75495466 75495518 -152029060 - L2 LINE L2 -1 3312 3258 431 308 173 9 chr3 75501252 75501466 -152023112 + MIR SINE MIR 14 262 0 670 282 49 25 chr3 75502637 75502882 -152021696 + MIR SINE MIR 2 252 -10 266 263 30 10 chr3 75503172 75503271 -152021307 + L1M4 LINE L1 2957 3057 -3089 3873 184 94 13 chr3 75503333 75504500 -152020078 + L1MB8 LINE L1 4903 6172 -6 282 290 75 55 chr3 75504502 75504847 -152019731 + L1M4 LINE L1 3110 3461 -2685 1301 190 62 86 chr3 75505461 75505835 -152018743 - MLT1A1 LTR MaLR 0 365 1 21 57 0 0 chr3 75506126 75506161 -152018417 + AT_rich Low_complexity Low_complexity 1 35 0 515 303 84 0 chr3 75507839 75508017 -152016561 - MIR SINE MIR -18 244 52 574 214 0 24 chr3 75508339 75508465 -152016113 - AluSp/q SINE Alu -34 279 157 1925 139 3 7 chr3 75508522 75508810 -152015768 - AluSx SINE Alu -25 287 1 914 151 7 0 chr3 75508810 75508949 -152015629 - AluJb SINE Alu -172 140 1 206 222 0 19 chr3 75509390 75509444 -152015134 + (CACCAT)n Simple_repeat Simple_repeat 5 57 0 278 219 272 35 chr3 75509453 75509567 -152015011 - MIR SINE MIR -12 250 110 314 295 132 8 chr3 75509969 75510098 -152014480 - MIR SINE MIR -70 192 48 3016 213 83 36 chr3 75510125 75510151 -152014427 + L1ME3 LINE L1 5283 5306 -856 2163 107 24 0 chr3 75510151 75510449 -152014129 + AluSq SINE Alu 1 305 -8 3016 213 83 36 chr3 75510449 75511243 -152013335 + L1ME3 LINE L1 5306 6141 -21 2027 143 0 3 chr3 75511268 75511561 -152013017 - AluSx SINE Alu -11 301 10 1645 187 33 0 chr3 75511564 75511863 -152012715 - AluJo SINE Alu 0 312 4 2269 67 3 3 chr3 75561894 75562178 -151962400 - AluY SINE Alu -25 286 3 1527 134 50 103 chr3 75562408 75562729 -151961849 + AluSx SINE Alu 1 304 -8 543 327 110 39 chr3 75562904 75563314 -151961264 - MLT1K LTR MaLR -146 442 4 208 228 18 35 chr3 75564056 75564113 -151960465 - MIR SINE MIR -136 126 71 2042 118 11 0 chr3 75564376 75564698 -151959880 + AluSx SINE Alu 1 325 0 218 368 26 0 chr3 75564999 75565075 -151959503 + MIR SINE MIR 50 127 -135 509 82 14 0 chr3 75565075 75565148 -151959430 - MSTC LTR MaLR 0 428 355 1556 170 3 48 chr3 75565152 75565446 -151959132 + AluJo SINE Alu 1 281 -31 731 178 37 0 chr3 75565467 75565602 -151958976 - MSTC LTR MaLR -58 370 231 401 245 82 34 chr3 75565970 75566117 -151958461 - MER5C DNA MER1_type -170 154 1 283 298 97 0 chr3 75566280 75566394 -151958184 - L2 LINE L2 -5 3267 3143 904 234 19 23 chr3 75566395 75566609 -151957969 - MER20 DNA MER1_type -6 213 1 448 256 75 0 chr3 75567078 75567211 -151957367 - MIR SINE MIR -30 232 90 1834 228 6 3 chr3 75567280 75567631 -151956947 - MER82 DNA MER2_type -1 652 301 590 141 10 10 chr3 75567879 75567978 -151956600 - MER82 DNA MER2_type -359 294 196 241 254 53 26 chr3 75567983 75568097 -151956481 + Tigger7 DNA MER2_type 498 614 -119 592 284 23 28 chr3 75568608 75568784 -151955794 - MLT1K LTR MaLR -313 275 101 333 250 10 10 chr3 75570117 75570213 -151954365 + L1MC4 LINE L1 6617 6712 -1330 326 255 82 36 chr3 75570236 75570432 -151954146 - L1ME4a LINE L1 -158 5963 5759 2096 138 0 3 chr3 75570432 75570730 -151953848 - AluJb SINE Alu -15 297 1 539 278 0 8 chr3 75570947 75571073 -151953505 + L2 LINE L2 3189 3313 0 326 316 101 10 chr3 75571913 75572134 -151952444 - MIR SINE MIR -15 247 7 3193 133 0 87 chr3 75572425 75572989 -151951589 - MLT2B2 LTR ERVL 0 515 1 2503 53 7 7 chr3 75573089 75573389 -151951189 - AluY SINE Alu -10 301 2 369 145 0 0 chr3 75573406 75573468 -151951110 + (TGGA)n Simple_repeat Simple_repeat 4 65 0 228 288 88 0 chr3 75573537 75573617 -151950961 - L2 LINE L2 0 3313 3227 234 393 28 0 chr3 75573812 75573919 -151950659 - L2 LINE L2 -562 2752 2643 792 160 0 0 chr3 75574232 75574351 -151950227 - Tigger1 DNA MER2_type 0 2418 2300 284 98 0 0 chr3 75574358 75574399 -151950179 - AluYa5 SINE Alu -103 198 158 331 330 0 10 chr3 75574553 75574653 -151949925 - L2 LINE L2 0 3272 3174 370 300 33 25 chr3 75574653 75574773 -151949805 - L2 LINE L2 -15 3257 3137 396 281 118 20 chr3 75574887 75575040 -151949538 + MIR SINE MIR 94 261 -1 1587 233 75 25 chr3 75575074 75575517 -151949061 + LTR40c LTR ERVL 1 465 0 192 371 0 0 chr3 75577581 75577643 -151946935 - L2 LINE L2 -7 3306 3245 1077 204 30 17 chr3 75577783 75578013 -151946565 + MLT1D LTR MaLR 1 233 -272 6721 125 23 13 chr3 75578251 75579300 -151945278 - Tigger1 DNA MER2_type -1359 1059 1 467 332 17 38 chr3 75579500 75579738 -151944840 - MIR SINE MIR -27 235 3 2344 81 0 0 chr3 75580418 75580713 -151943865 - AluY SINE Alu -16 295 1 209 385 39 17 chr3 75581653 75581832 -151942746 + MIR SINE MIR 23 205 -57 2316 90 0 19 chr3 75582665 75582975 -151941603 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr3 75583090 75583111 -151941467 + AT_rich Low_complexity Low_complexity 1 21 0 330 111 0 0 chr3 75583632 75583677 -151940901 + L2 LINE L2 3227 3271 -1 263 271 14 0 chr3 75583959 75584029 -151940549 + L1ME4a LINE L1 5982 6052 -69 1440 220 26 10 chr3 75584041 75584354 -151940224 - L1MB4 LINE L1 -16 6164 5847 1759 171 3 23 chr3 75584964 75585269 -151939309 - AluJb SINE Alu -13 299 1 2209 119 0 0 chr3 75585279 75585573 -151939005 - AluSg SINE Alu -16 294 1 852 179 79 104 chr3 75585949 75586208 -151938370 + Charlie1 DNA MER1_type 2452 2703 -58 971 176 53 5 chr3 75586208 75586395 -151938183 + L1MC2 LINE L1 6136 6331 -13 852 179 79 104 chr3 75586395 75586453 -151938125 + Charlie1 DNA MER1_type 2703 2761 0 207 221 29 44 chr3 75587164 75587232 -151937346 - L2 LINE L2 -1 3312 3246 2366 94 0 7 chr3 75587950 75588259 -151936319 + L1PB1 LINE L1 5842 6148 -3 181 158 53 88 chr3 75589279 75589336 -151935242 + MER5B DNA MER1_type 122 176 -2 418 275 75 19 chr3 75589523 75589683 -151934895 + MIR SINE MIR 94 262 0 1674 172 0 20 chr3 75590489 75590792 -151933786 - AluJb SINE Alu -7 305 9 436 271 93 20 chr3 75590821 75590972 -151933606 + MIR SINE MIR 51 212 -50 1941 155 116 42 chr3 75591192 75591624 -151932954 + MER31B LTR ERV1 3 466 0 630 311 5 41 chr3 75591891 75592006 -151932572 - MIR SINE MIR -50 212 107 1841 84 92 4 chr3 75592006 75592267 -151932311 + AluSx SINE Alu 17 300 -12 630 311 5 41 chr3 75592267 75592370 -151932208 - MIR SINE MIR -155 107 2 1280 132 29 19 chr3 75593490 75593695 -151930883 - AluSg/x SINE Alu -1 311 105 194 304 74 34 chr3 75594556 75594704 -151929874 + L2 LINE L2 2888 3041 -231 780 294 152 42 chr3 75595075 75595656 -151928922 + L2 LINE L2 2668 3313 0 22 0 0 0 chr3 75595671 75595693 -151928885 + AT_rich Low_complexity Low_complexity 1 22 0 183 42 0 0 chr3 75595814 75595838 -151928740 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 723 162 64 147 chr3 75595944 75596008 -151928570 + MER5A DNA MER1_type 2 70 -119 18706 32 0 0 chr3 75596008 75599032 -151925546 + L1PA2 LINE L1 3134 6155 0 723 162 64 147 chr3 75599032 75599171 -151925407 + MER5A DNA MER1_type 70 188 -1 2042 111 0 28 chr3 75599303 75599614 -151924964 + AluSg SINE Alu 1 303 0 300 281 99 16 chr3 75600235 75600356 -151924222 - MIR SINE MIR -27 235 105 2268 103 0 3 chr3 75600402 75600694 -151923884 - AluSx SINE Alu -21 291 1 24 0 0 0 chr3 75601205 75601229 -151923349 + AT_rich Low_complexity Low_complexity 1 24 0 400 349 103 35 chr3 75601725 75602066 -151922512 + L2 LINE L2 2873 3236 -36 449 291 80 15 chr3 75602654 75602853 -151921725 + L2 LINE L2 2148 2359 -955 184 200 0 0 chr3 75602844 75602879 -151921699 - MIR SINE MIR -161 101 67 * 353 136 0 0 chr3 75604656 75604715 -151919863 + L1MB5 LINE L1 6110 6168 -6 204 280 93 37 chr3 75605649 75605756 -151918822 - L2 LINE L2 0 3313 3201 226 379 78 39 chr3 75605877 75606109 -151918469 - L2 LINE L2 -338 2976 2736 281 105 0 0 chr3 75606552 75606590 -151917988 + Alu SINE Alu 5 42 -258 1549 174 34 27 chr3 75606635 75606929 -151917649 + AluJb SINE Alu 8 303 -9 202 269 9 9 chr3 75607824 75607932 -151916646 + GA-rich Low_complexity Low_complexity 1 108 0 232 314 105 0 chr3 75609527 75609613 -151914965 - MIR3 SINE MIR -111 97 3 393 318 0 39 chr3 75609894 75610048 -151914530 - L2 LINE L2 -5 3308 3161 1934 177 13 25 chr3 75610306 75610701 -151913877 + MLT1B LTR MaLR 1 390 0 738 244 139 33 chr3 75610871 75611296 -151913282 + MLT1G3 LTR MaLR 1 535 -55 1667 160 4 0 chr3 75611296 75611573 -151913005 - AluSx SINE Alu 0 314 37 738 244 139 33 chr3 75611573 75611628 -151912950 + MLT1G3 LTR MaLR 535 583 -7 1676 165 7 21 chr3 75613060 75613345 -151911233 - AluJo SINE Alu -31 281 1 341 42 0 21 chr3 75613374 75613422 -151911156 + (ATATG)n Simple_repeat Simple_repeat 2 48 0 621 237 0 15 chr3 75614493 75614624 -151909954 - FLAM_A SINE Alu -4 129 1 1687 183 40 56 chr3 75614878 75615427 -151909151 + L1MC1 LINE L1 4673 5229 -1104 1687 165 3 32 chr3 75615427 75615477 -151909101 + L1MC1 LINE L1 6005 6055 -278 2322 123 3 15 chr3 75615477 75615818 -151908760 - MER1B DNA MER1_type 0 337 1 1687 165 3 32 chr3 75615818 75616106 -151908472 + L1MC1 LINE L1 6055 6333 0 1687 183 40 56 chr3 75616106 75616282 -151908296 + L1MC1 LINE L1 5229 5406 -927 195 42 0 0 chr3 75616282 75616306 -151908272 + (TA)n Simple_repeat Simple_repeat 2 25 0 1687 183 40 56 chr3 75616306 75616520 -151908058 + L1MC1 LINE L1 5406 5622 -711 1578 159 23 40 chr3 75616520 75616821 -151907757 + AluJo SINE Alu 16 311 -1 1687 183 40 56 chr3 75616821 75617052 -151907526 + L1MC1 LINE L1 5622 6333 0 1521 224 49 31 chr3 75617051 75617324 -151907254 + L1MD2 LINE L1 5906 6191 -168 * 1658 189 0 50 chr3 75617324 75617642 -151906936 - AluJb SINE Alu -10 302 1 1521 224 49 31 chr3 75617642 75617793 -151906785 + L1MD2 LINE L1 6191 6338 -21 401 261 63 63 chr3 75617852 75618090 -151906488 + L1ME4a LINE L1 5874 6111 -10 204 67 0 0 chr3 75618910 75618940 -151905638 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2019 99 0 4 chr3 75618952 75619215 -151905363 - AluSc SINE Alu -47 262 1 956 240 97 14 chr3 75619306 75619656 -151904922 + MER20B DNA MER1_type 168 546 -237 281 258 15 0 chr3 75619672 75619738 -151904840 + MER5A DNA MER1_type 9 75 -114 673 191 0 9 chr3 75619738 75619853 -151904725 + FLAM_A SINE Alu 2 115 -18 6228 214 87 70 chr3 75621403 75621825 -151902753 + L1MD1 LINE L1 850 1263 -5373 634 229 15 0 chr3 75621825 75621956 -151902622 + AluJb SINE Alu 175 307 -5 6228 214 87 70 chr3 75621956 75622088 -151902490 + L1MD1 LINE L1 1263 1391 -5245 2173 145 3 0 chr3 75622088 75622399 -151902179 + AluSx SINE Alu 1 312 0 6228 214 87 70 chr3 75622399 75625526 -151899052 + L1MD1 LINE L1 1391 4464 -2172 1201 163 228 4 chr3 75625526 75625663 -151898915 - AluJb SINE Alu -1 301 196 267 103 0 0 chr3 75625663 75625702 -151898876 + (TG)n Simple_repeat Simple_repeat 1 39 0 1201 163 228 4 chr3 75625702 75625810 -151898768 - AluJb SINE Alu -106 196 1 6228 214 87 70 chr3 75625810 75626482 -151898096 + L1MD1 LINE L1 4464 5123 -1513 1468 169 24 37 chr3 75626482 75626778 -151897800 + AluJo SINE Alu 19 310 -2 6228 214 87 70 chr3 75626778 75627356 -151897222 + L1MD1 LINE L1 5123 6020 -616 526 164 9 9 chr3 75627356 75627461 -151897117 + MSTD LTR MaLR 1 109 -265 632 210 16 0 chr3 75627563 75627687 -151896891 + MSTD LTR MaLR 271 396 0 945 158 246 0 chr3 75627687 75627902 -151896676 + L1MD1 LINE L1 6016 6283 -353 568 215 57 25 chr3 75627919 75628077 -151896501 + MLT1C LTR MaLR 305 467 0 380 259 200 7 chr3 75628077 75628212 -151896366 + MER5A DNA MER1_type 29 189 0 916 191 17 69 chr3 75629730 75629961 -151894617 - MER20B DNA MER1_type 0 219 1 212 377 184 6 chr3 75630539 75630855 -151893723 + L2 LINE L2 2449 2820 -494 273 203 16 0 chr3 75631359 75631423 -151893155 + L1ME4a LINE L1 5973 6037 -84 550 302 36 16 chr3 75632985 75633177 -151891401 - MIR SINE MIR -34 228 33 1938 126 66 0 chr3 75634098 75634384 -151890194 + AluSx SINE Alu 1 305 -7 794 248 23 33 chr3 75634436 75634650 -151889928 - MIR SINE MIR -8 254 43 865 110 0 22 chr3 75634694 75634830 -151889748 + FLAM_C SINE Alu 1 133 0 422 345 63 6 chr3 75635200 75635374 -151889204 + MIR SINE MIR 47 230 -32 579 238 140 6 chr3 75635898 75636062 -151888516 - MER5A DNA MER1_type 0 189 4 552 244 154 0 chr3 75636396 75636552 -151888026 - MIR SINE MIR -77 185 6 3099 145 10 0 chr3 75636698 75637196 -151887382 + MER41E LTR ERV1 1 503 -9 423 379 20 0 chr3 75637581 75637734 -151886844 - L2 LINE L2 0 3272 3117 386 326 23 0 chr3 75638875 75639007 -151885571 + MIR SINE MIR 15 149 -113 2540 77 0 0 chr3 75639117 75639428 -151885150 - AluY SINE Alu 0 311 1 818 203 18 0 chr3 75639709 75639872 -151884706 - MER58B DNA MER1_type -1 340 175 496 181 43 9 chr3 75639977 75640093 -151884485 - L1MA9 LINE L1 -38 6274 6155 1763 153 29 0 chr3 75640204 75640479 -151884099 - AluJb SINE Alu -13 299 17 539 246 8 0 chr3 75640801 75640923 -151883655 + MER94 DNA DNA 12 134 0 213 139 0 23 chr3 75641260 75641303 -151883275 + (TTTTTG)n Simple_repeat Simple_repeat 3 44 0 1733 177 3 20 chr3 75641799 75642099 -151882479 + AluJb SINE Alu 1 295 -17 428 306 41 0 chr3 75643941 75644062 -151880516 + L2 LINE L2 3188 3313 0 2536 117 3 8 chr3 75644068 75644445 -151880133 - THE1C LTR MaLR 0 375 1 546 314 51 0 chr3 75644647 75644803 -151879775 + MIR SINE MIR 3 166 -96 385 105 0 0 chr3 75646357 75646414 -151878164 + Tigger4(Zombi) DNA MER2_type 1 57 -2674 426 125 0 0 chr3 75646422 75646486 -151878092 + Tigger4(Zombi) DNA MER2_type 2668 2731 0 736 197 0 0 chr3 75646850 75646982 -151877596 - FLAM_A SINE Alu -1 132 1 447 332 93 26 chr3 75647576 75647972 -151876606 - L2 LINE L2 -263 3050 2631 21 0 0 0 chr3 75648173 75648194 -151876384 + AT_rich Low_complexity Low_complexity 1 21 0 675 267 100 40 chr3 75649615 75650162 -151874416 - MLT1L LTR MaLR -2 613 19 2097 148 0 16 chr3 75650824 75651141 -151873437 + AluJb SINE Alu 1 312 0 2300 74 22 32 chr3 75652502 75652813 -151871765 - AluSq SINE Alu -5 308 1 1736 166 13 22 chr3 75653626 75653940 -151870638 + AluJo SINE Alu 1 311 -1 714 125 0 0 chr3 75653940 75654052 -151870526 + (GA)n Simple_repeat Simple_repeat 1 112 0 791 188 56 0 chr3 75654438 75654598 -151869980 - MER82 DNA MER2_type -462 191 23 183 294 167 29 chr3 75654651 75654753 -151869825 - MER5B DNA MER1_type -62 116 1 432 222 24 60 chr3 75655379 75655546 -151869032 - MER103 DNA DNA 0 166 6 1789 164 27 0 chr3 75656480 75656773 -151867805 - AluJb SINE Alu -11 301 1 1040 247 16 24 chr3 75656945 75657196 -151867382 + MIR SINE MIR 1 249 -13 309 313 0 0 chr3 75657196 75657279 -151867299 - MER63A DNA MER1_type -1 209 127 247 88 0 0 chr3 75657292 75657326 -151867252 - MER63A DNA MER1_type -174 36 3 7915 107 24 38 chr3 75657340 75657464 -151867114 - HSMAR2 DNA Mariner -9 1293 1169 2157 104 44 0 chr3 75657464 75657761 -151866817 - AluSg SINE Alu 0 310 1 7915 107 24 38 chr3 75657761 75657837 -151866741 - HSMAR2 DNA Mariner -133 1169 1093 1763 108 0 20 chr3 75657837 75658087 -151866491 - AluSg1 SINE Alu -7 302 58 7915 107 24 38 chr3 75658087 75659195 -151865383 - HSMAR2 DNA Mariner -209 1093 2 280 217 12 12 chr3 75659195 75659278 -151865300 + (TA)n Simple_repeat Simple_repeat 1 83 0 733 256 104 13 chr3 75659934 75660164 -151864414 - MIR SINE MIR -1 261 11 726 199 48 100 chr3 75660168 75660399 -151864179 - MER20 DNA MER1_type 0 219 1 220 303 9 92 chr3 75660428 75660537 -151864041 + MER5B DNA MER1_type 7 106 -72 * 382 262 7 61 chr3 75660505 75660683 -151863895 + MIR SINE MIR 25 194 -14 414 184 202 0 chr3 75662470 75662584 -151861994 + MIR3 SINE MIR 61 197 -11 699 167 8 0 chr3 75662868 75662988 -151861590 + FLAM_A SINE Alu 1 121 -12 322 254 73 61 chr3 75664998 75665165 -151859413 + L1ME LINE L1 5685 5854 -308 315 322 37 23 chr3 75665493 75665707 -151858871 - L3b LINE CR1 -90 1493 1277 3510 63 2 0 chr3 75666797 75667243 -151857335 + L1PA7 LINE L1 5708 6154 0 22 56 0 0 chr3 75667247 75667283 -151857295 + AT_rich Low_complexity Low_complexity 1 36 0 847 73 9 0 chr3 75668377 75668486 -151856092 - AluSq/x SINE Alu -203 110 1 2050 125 25 0 chr3 75670601 75670882 -151853696 + AluSx SINE Alu 1 288 -24 1151 134 75 5 chr3 75671795 75671996 -151852582 + MER20 DNA MER1_type 1 215 -4 216 0 0 0 chr3 75672304 75672328 -151852250 + (A)n Simple_repeat Simple_repeat 1 24 0 186 386 20 22 chr3 75672329 75672450 -151852128 - MIR SINE MIR -79 129 9 295 202 298 18 chr3 75672532 75672646 -151851932 + MIR SINE MIR 99 244 -18 467 366 35 31 chr3 75673093 75673350 -151851228 + MIR SINE MIR 5 262 0 279 54 0 0 chr3 75673381 75673418 -151851160 + (TCC)n Simple_repeat Simple_repeat 3 39 0 191 340 0 0 chr3 75673422 75673475 -151851103 + L2 LINE L2 3210 3262 -10 598 249 11 72 chr3 75673506 75673618 -151850960 - MIR SINE MIR -91 171 73 1269 167 41 101 chr3 75673618 75673935 -151850643 - AluJo SINE Alu -14 298 1 598 249 11 72 chr3 75673935 75674003 -151850575 - MIR SINE MIR -189 73 2 780 261 15 5 chr3 75675890 75676085 -151848493 - MIR SINE MIR -19 243 47 1498 230 88 2 chr3 75676290 75676711 -151847867 + MER34 LTR ERV1 86 542 0 412 265 235 0 chr3 75676744 75676914 -151847664 - MIR SINE MIR -50 212 3 22 35 0 0 chr3 75676979 75677008 -151847570 + AT_rich Low_complexity Low_complexity 1 29 0 2046 144 0 3 chr3 75677019 75677331 -151847247 + AluJb SINE Alu 1 311 -1 352 338 51 25 chr3 75678656 75678813 -151845765 - MIR SINE MIR -70 192 32 304 314 29 0 chr3 75678845 75678950 -151845628 + L3 LINE CR1 1412 1519 -58 400 263 89 68 chr3 75679476 75679666 -151844912 + L3 LINE CR1 980 1173 -404 740 123 0 0 chr3 75679686 75679792 -151844786 - AluSp SINE Alu -207 106 1 2204 109 3 0 chr3 75679836 75680120 -151844458 + AluSx SINE Alu 1 285 -27 302 300 33 58 chr3 75680142 75680262 -151844316 + MIR SINE MIR 19 135 -73 891 152 8 0 chr3 75680552 75680684 -151843894 + AluSq/x SINE Alu 1 133 -179 21 0 0 0 chr3 75680693 75680714 -151843864 + AT_rich Low_complexity Low_complexity 1 21 0 1520 197 120 16 chr3 75680844 75681295 -151843283 + LTR54B LTR ERV1 1 498 0 2138 141 0 0 chr3 75681366 75681663 -151842915 + AluSx SINE Alu 1 297 -15 989 182 29 0 chr3 75682569 75682739 -151841839 + FRAM SINE Alu 1 173 -3 2010 117 3 14 chr3 75683909 75684217 -151840361 - AluSc SINE Alu 0 306 2 2083 114 0 38 chr3 75684247 75684562 -151840016 + AluSx SINE Alu 1 303 -9 2210 104 17 0 chr3 75685149 75685447 -151839131 + AluSg SINE Alu 1 303 -7 417 250 8 39 chr3 75686259 75686387 -151838191 + MIR SINE MIR 121 244 -18 1925 174 0 0 chr3 75686479 75686778 -151837800 + AluJb SINE Alu 1 299 -13 24 0 0 0 chr3 75687333 75687357 -151837221 + AT_rich Low_complexity Low_complexity 1 24 0 435 311 148 0 chr3 75688084 75688267 -151836311 + MIR SINE MIR 53 262 0 1688 193 0 10 chr3 75688393 75688693 -151835885 + AluJo SINE Alu 1 297 -15 225 0 0 0 chr3 75688733 75688758 -151835820 + (A)n Simple_repeat Simple_repeat 1 25 0 1688 200 3 7 chr3 75688888 75689188 -151835390 + AluJb SINE Alu 1 299 -13 21 0 0 0 chr3 75689707 75689728 -151834850 + AT_rich Low_complexity Low_complexity 1 21 0 202 171 0 0 chr3 75690240 75690275 -151834303 + L2 LINE L2 3213 3247 -25 717 253 11 0 chr3 75690441 75690615 -151833963 + MIR SINE MIR 73 248 -14 993 177 0 23 chr3 75690728 75690903 -151833675 + AluJb SINE Alu 142 312 0 273 309 154 11 chr3 75690968 75691143 -151833435 + MIR SINE MIR 48 247 -15 2373 102 0 0 chr3 75691380 75691685 -151832893 + AluSq SINE Alu 1 305 -8 289 360 125 5 chr3 75691726 75691926 -151832652 - MIR SINE MIR -10 252 29 947 187 27 53 chr3 75692085 75692310 -151832268 + MER20 DNA MER1_type 1 219 0 1658 184 0 3 chr3 75693273 75693556 -151831022 - AluJb SINE Alu -30 282 1 1788 148 79 0 chr3 75694170 75694447 -151830131 + AluSg SINE Alu 1 299 -11 506 88 50 0 chr3 75694661 75694741 -151829837 - L1PA10 LINE L1 -9 6159 6076 22 35 0 0 chr3 75694798 75694827 -151829751 + AT_rich Low_complexity Low_complexity 1 29 0 1135 168 244 24 chr3 75695348 75695758 -151828820 + MLT1D LTR MaLR 6 505 0 198 0 0 0 chr3 75695845 75695867 -151828711 + (A)n Simple_repeat Simple_repeat 1 22 0 209 266 223 0 chr3 75695970 75696064 -151828514 - MIR SINE MIR -1 261 147 3284 183 46 90 chr3 75696093 75696593 -151827985 + L1MB8 LINE L1 4998 5518 -660 719 189 8 0 chr3 75696593 75696725 -151827853 + AluJo/FLAM SINE Alu 1 133 -169 1811 145 0 24 chr3 75696726 75697023 -151827555 - AluJo SINE Alu -22 290 1 3284 183 46 90 chr3 75697023 75697064 -151827514 + L1MB8 LINE L1 5518 5559 -619 2225 113 0 0 chr3 75697064 75697355 -151827223 + AluSx SINE Alu 1 291 -21 3284 183 46 90 chr3 75697355 75697658 -151826920 + L1MB8 LINE L1 5559 5764 -414 2235 69 40 13 chr3 75697658 75697961 -151826617 + AluY SINE Alu 1 311 0 3284 183 46 90 chr3 75697961 75698358 -151826220 + L1MB8 LINE L1 5764 6177 -1 301 254 30 0 chr3 75698844 75698911 -151825667 + L2 LINE L2 3233 3301 -12 188 65 0 32 chr3 75698912 75698943 -151825635 + (TGAA)n Simple_repeat Simple_repeat 3 32 0 1930 105 0 64 chr3 75699151 75699446 -151825132 - AluSx SINE Alu -12 300 25 1586 169 19 4 chr3 75699554 75699815 -151824763 - AluJb SINE Alu -47 265 1 2432 66 0 13 chr3 75699821 75700124 -151824454 - AluY SINE Alu -12 299 1 376 368 100 47 chr3 75700769 75701149 -151823429 - L2 LINE L2 -49 3223 2824 21 0 0 0 chr3 75701507 75701528 -151823050 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 75702082 75702103 -151822475 + AT_rich Low_complexity Low_complexity 1 21 0 1623 199 7 10 chr3 75702105 75702407 -151822171 + AluJo SINE Alu 1 301 -11 261 331 137 0 chr3 75702719 75702858 -151821720 - MIR3 SINE MIR -45 163 6 191 36 36 0 chr3 75702994 75703022 -151821556 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 2148 122 10 13 chr3 75704007 75704311 -151820267 + AluSx SINE Alu 6 308 -4 357 212 15 0 chr3 75704527 75704593 -151819985 - MER2 DNA MER2_type 0 345 279 276 221 11 32 chr3 75704910 75705005 -151819573 + L1ME4a LINE L1 6026 6118 -3 628 198 102 12 chr3 75705146 75705241 -151819337 - Tigger7 DNA MER2_type 0 2491 2406 180 0 0 0 chr3 75705241 75705261 -151819317 + (CATA)n Simple_repeat Simple_repeat 2 21 0 628 198 102 12 chr3 75705261 75705332 -151819246 - Tigger7 DNA MER2_type -85 2406 2310 2010 116 29 0 chr3 75705392 75705669 -151818909 + AluSx SINE Alu 1 285 -27 1414 218 30 10 chr3 75705794 75706097 -151818481 - Tigger7 DNA MER2_type -418 315 7 199 292 42 42 chr3 75706100 75706196 -151818382 + MER5A DNA MER1_type 88 183 -6 212 296 49 12 chr3 75706621 75706702 -151817876 - MIR3 SINE MIR 0 208 125 493 213 75 6 chr3 75707382 75707542 -151817036 + L1MD1 LINE L1 5121 5291 -855 1554 211 54 53 chr3 75708036 75708851 -151815727 + L1MD1 LINE L1 5281 6241 -1 396 0 0 0 chr3 75708905 75708949 -151815629 + (CA)n Simple_repeat Simple_repeat 2 45 0 2245 127 0 0 chr3 75708995 75709303 -151815275 + AluSx SINE Alu 5 312 0 1301 149 50 122 chr3 75709307 75709683 -151814895 - MLT2D LTR ERVL -65 349 1 21 82 0 0 chr3 75709831 75709880 -151814698 + AT_rich Low_complexity Low_complexity 1 49 0 775 231 19 14 chr3 75709927 75710139 -151814439 - MER58A DNA MER1_type -1 223 11 1595 191 27 3 chr3 75710664 75710958 -151813620 + AluJo SINE Alu 1 301 -11 2110 107 0 4 chr3 75711247 75711561 -151813017 + AluSc SINE Alu 1 313 0 4362 184 25 4 chr3 75711911 75712755 -151811823 + Tigger7 DNA MER2_type 1 862 -1625 917 147 0 18 chr3 75712751 75712914 -151811664 + Tigger7 DNA MER2_type 2330 2489 -2 * 21 0 0 0 chr3 75712991 75713012 -151811566 + AT_rich Low_complexity Low_complexity 1 21 0 782 252 44 31 chr3 75713225 75713451 -151811127 + MIR SINE MIR 27 255 -7 27 0 0 0 chr3 75713934 75713961 -151810617 + AT_rich Low_complexity Low_complexity 1 27 0 534 125 0 0 chr3 75714088 75714168 -151810410 - MADE1 DNA Mariner 0 80 1 1805 166 12 29 chr3 75715032 75715375 -151809203 + MER1B DNA MER1_type 1 337 0 262 250 44 0 chr3 75715387 75715455 -151809123 - L2 LINE L2 -1 3312 3242 242 318 9 56 chr3 75715853 75715960 -151808618 + L2 LINE L2 3171 3272 0 495 0 0 0 chr3 75716073 75716128 -151808450 + (TG)n Simple_repeat Simple_repeat 2 56 0 232 197 0 66 chr3 75716202 75716263 -151808315 - L1ME3A LINE L1 -83 6087 6031 1768 116 0 0 chr3 75716779 75717038 -151807540 - L1PA13 LINE L1 -2 6161 5903 327 158 0 0 chr3 75717038 75717095 -151807483 + L1PA13 LINE L1 5853 5909 -259 263 279 29 0 chr3 75717596 75717768 -151806810 + (TA)n Simple_repeat Simple_repeat 2 178 0 813 184 12 12 chr3 75717771 75717934 -151806644 + MER57A LTR ERV1 1 163 -240 6698 81 4 0 chr3 75717934 75719347 -151805231 + L1PA10 LINE L1 4752 6167 -1 28 29 0 0 chr3 75719347 75719382 -151805196 + AT_rich Low_complexity Low_complexity 1 35 0 2200 120 0 0 chr3 75719385 75719676 -151804902 + AluSc SINE Alu 1 291 -18 1168 194 21 0 chr3 75719677 75719914 -151804664 + MER57A LTR ERV1 153 394 -9 371 138 69 11 chr3 75720006 75720093 -151804485 - MER20 DNA MER1_type -92 127 36 588 311 79 18 chr3 75720230 75720391 -151804187 - MIR SINE MIR -16 246 66 1500 219 11 35 chr3 75720391 75720765 -151803813 - MLT1A1 LTR MaLR 0 365 1 588 311 79 18 chr3 75720765 75720831 -151803747 - MIR SINE MIR -196 66 5 482 280 30 15 chr3 75721030 75721162 -151803416 - MIR SINE MIR -76 186 53 496 133 13 0 chr3 75721171 75721246 -151803332 + AluSx SINE Alu 1 76 -237 1939 91 84 0 chr3 75721247 75721521 -151803057 - AluSp SINE Alu -16 297 1 1584 133 4 4 chr3 75721521 75721762 -151802816 + AluSx SINE Alu 65 305 -5 222 37 0 0 chr3 75723191 75723214 -151801364 + (TC)n Simple_repeat Simple_repeat 1 50 0 222 37 0 0 chr3 75723214 75723241 -151801337 + (TC)n Simple_repeat Simple_repeat 1 27 0 258 290 16 0 chr3 75724143 75724205 -151800373 + L2 LINE L2 3240 3302 -11 180 158 0 0 chr3 75724909 75724947 -151799631 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 192 125 0 0 chr3 75725156 75725188 -151799390 + (TG)n Simple_repeat Simple_repeat 1 32 0 321 26 0 0 chr3 75725667 75725705 -151798873 + (TC)n Simple_repeat Simple_repeat 1 38 0 207 0 0 0 chr3 75725704 75725727 -151798851 + (CA)n Simple_repeat Simple_repeat 1 23 0 * 2451 78 3 3 chr3 75725935 75726241 -151798337 - AluSp SINE Alu -7 306 1 673 234 52 76 chr3 75726678 75727045 -151797533 + L1ME LINE L1 5411 5768 -353 236 299 28 28 chr3 75727469 75727576 -151797002 + MIR SINE MIR 129 235 -27 195 42 0 0 chr3 75727799 75727823 -151796755 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 30 83 0 0 chr3 75728875 75728947 -151795631 + AT_rich Low_complexity Low_complexity 1 72 0 557 299 57 0 chr3 75728947 75729124 -151795454 - MIR SINE MIR -14 248 62 367 208 170 75 chr3 75729263 75729422 -151795156 - MER5B DNA MER1_type -2 176 3 649 186 144 32 chr3 75729503 75729691 -151794887 + MER3 DNA MER1_type 1 209 0 22 0 0 0 chr3 75730598 75730620 -151793958 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr3 75731275 75731301 -151793277 + (TG)n Simple_repeat Simple_repeat 2 27 0 329 310 70 0 chr3 75731506 75731606 -151792972 - L2 LINE L2 -5 3308 3202 1933 131 13 20 chr3 75732237 75732535 -151792043 + AluSg SINE Alu 3 298 -12 2394 100 0 0 chr3 75732828 75733129 -151791449 + AluSc SINE Alu 1 301 -8 532 312 56 20 chr3 75734013 75734263 -151790315 - MLT1K LTR MaLR -199 389 131 462 191 54 30 chr3 75735238 75735406 -151789172 + L1MC5 LINE L1 7323 7494 -467 1895 124 0 0 chr3 75735523 75735788 -151788790 + AluSx SINE Alu 47 311 -1 2227 128 15 25 chr3 75735791 75736196 -151788382 - MSTA LTR MaLR -27 401 1 396 228 99 61 chr3 75736197 75736460 -151788118 + L1MC5 LINE L1 7529 7801 -160 542 246 18 0 chr3 75736576 75736686 -151787892 + L2 LINE L2 3200 3311 -2 236 217 17 33 chr3 75736969 75737029 -151787549 - L2 LINE L2 -12 3301 3243 458 303 25 31 chr3 75737111 75737273 -151787305 + MIR SINE MIR 13 173 -89 878 230 58 5 chr3 75738584 75738775 -151785803 - MER63A DNA MER1_type 0 210 10 235 200 18 0 chr3 75738789 75738844 -151785734 + L1ME4a LINE L1 5743 5798 -323 2255 104 3 0 chr3 75738939 75739238 -151785340 + AluSg SINE Alu 1 300 -10 221 178 14 68 chr3 75739249 75739322 -151785256 + (TATATG)n Simple_repeat Simple_repeat 6 74 0 329 216 90 48 chr3 75739324 75739491 -151785087 + L1ME4a LINE L1 5936 6109 -12 1849 250 67 17 chr3 75741861 75742446 -151782132 + MLT1E2 LTR MaLR 13 626 0 1756 179 46 6 chr3 75742528 75742879 -151781699 + MLT1A1 LTR MaLR 1 365 0 233 222 0 0 chr3 75743545 75743590 -151780988 + GA-rich Low_complexity Low_complexity 4 48 0 247 223 39 155 chr3 75744200 75744303 -151780275 + MIR3 SINE MIR 66 156 -52 199 258 34 93 chr3 75746195 75746352 -151778226 - MIR SINE MIR -63 145 40 2180 118 0 3 chr3 75746354 75746650 -151777928 - AluSx SINE Alu -17 295 1 334 264 93 107 chr3 75747249 75747559 -151777019 - L2 LINE L2 -54 3259 2954 2770 228 24 8 chr3 75747611 75748493 -151776085 - L1MDa LINE L1 -3286 3254 2359 272 140 0 18 chr3 75749757 75749770 -151774808 + (GA)n Simple_repeat Simple_repeat 2 14 -43 1892 88 110 0 chr3 75749770 75750033 -151774545 + AluSg1 SINE Alu 1 292 -17 272 140 0 18 chr3 75750033 75750076 -151774502 + (GA)n Simple_repeat Simple_repeat 14 57 0 23 0 0 0 chr3 75750345 75750368 -151774210 + AT_rich Low_complexity Low_complexity 1 23 0 693 195 39 7 chr3 75751132 75751286 -151773292 - L1MD3 LINE L1 -8 7987 7829 381 155 42 0 chr3 75751286 75751357 -151773221 - L1MD2 LINE L1 -218 6141 6068 1153 117 0 12 chr3 75751373 75751536 -151773042 + AluSg/x SINE Alu 115 275 -37 230 0 0 32 chr3 75751536 75751567 -151773011 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 3700 180 90 4 chr3 75751567 75752335 -151772243 - L1MD2 LINE L1 -280 6079 5244 2207 150 85 15 chr3 75752335 75752735 -151771843 + Tigger3b DNA MER2_type 2 429 -802 1034 229 110 6 chr3 75752735 75753080 -151771498 + L1M4 LINE L1 4862 5242 -904 4782 238 32 35 chr3 75753095 75754626 -151769952 - L1MD2 LINE L1 -1592 4554 3028 203 32 65 0 chr3 75754633 75754664 -151769914 + T-rich Low_complexity Low_complexity 2 34 0 2080 103 72 0 chr3 75754667 75754957 -151769621 - AluSq SINE Alu -2 311 1 231 191 0 0 chr3 75754960 75755007 -151769571 - L1MD2 LINE L1 -3106 3040 2994 2406 77 3 3 chr3 75755594 75755892 -151768686 - AluSp SINE Alu -15 298 1 1174 240 87 89 chr3 75756246 75756776 -151767802 + MLT1F LTR MaLR 11 539 -3 2138 126 3 3 chr3 75758203 75758513 -151766065 + AluSg SINE Alu 1 310 0 321 298 99 0 chr3 75758618 75758759 -151765819 + MIR SINE MIR 96 250 -12 224 242 91 0 chr3 75759646 75759712 -151764866 + MIR SINE MIR 82 153 -109 599 272 58 12 chr3 75759879 75760052 -151764526 - MIR SINE MIR -80 182 2 180 0 0 0 chr3 75760208 75760228 -151764350 + (A)n Simple_repeat Simple_repeat 1 20 0 204 235 20 0 chr3 75760895 75760946 -151763632 + (TTCA)n Simple_repeat Simple_repeat 4 55 0 308 304 69 0 chr3 75761006 75761108 -151763470 - MIR SINE MIR -101 161 53 525 245 0 0 chr3 75761121 75761227 -151763351 + FLAM_C SINE Alu 3 108 -35 363 291 67 8 chr3 75761899 75762033 -151762545 + MIR SINE MIR 5 146 -116 316 265 84 103 chr3 75762065 75762242 -151762336 + MLT1I LTR MaLR 22 192 -217 2275 121 0 3 chr3 75762242 75762556 -151762022 - AluSq SINE Alu 0 313 1 316 265 84 103 chr3 75762556 75762699 -151761879 + MLT1I LTR MaLR 192 336 -73 348 85 0 64 chr3 75762700 75762794 -151761784 + (TA)n Simple_repeat Simple_repeat 2 89 0 502 255 0 0 chr3 75763577 75763675 -151760903 - MER81 DNA DNA -16 98 1 2244 97 3 0 chr3 75764061 75764351 -151760227 + AluSq SINE Alu 6 296 -17 292 191 59 29 chr3 75764352 75764420 -151760158 + L2 LINE L2 3202 3271 -42 2233 113 0 0 chr3 75764699 75764990 -151759588 + AluSx SINE Alu 2 292 -20 653 209 7 14 chr3 75765462 75765523 -151759055 + MER5A DNA MER1_type 40 100 -89 183 42 0 0 chr3 75765523 75765547 -151759031 + (CA)n Simple_repeat Simple_repeat 2 25 0 653 209 7 14 chr3 75765547 75765633 -151758945 + MER5A DNA MER1_type 100 186 -3 440 250 96 6 chr3 75766123 75766279 -151758299 + L2 LINE L2 2478 2647 -667 658 275 154 46 chr3 75766316 75766687 -151757891 + L2 LINE L2 2823 3233 -80 313 137 0 0 chr3 75768354 75768405 -151756173 + L1P LINE L1 4743 4793 -1353 324 309 0 0 chr3 75768445 75768529 -151756049 - L2 LINE L2 -5 3308 3225 2324 103 3 0 chr3 75769351 75769651 -151754927 - AluSp SINE Alu -12 301 1 2059 82 0 97 chr3 75769702 75770031 -151754547 + AluY SINE Alu 1 297 -14 2146 125 0 10 chr3 75770671 75770966 -151753612 + AluSx SINE Alu 1 292 -20 474 205 0 27 chr3 75771045 75771157 -151753421 + FLAM_A SINE Alu 31 139 -3 266 211 0 0 chr3 75771772 75771824 -151752754 - Charlie8 DNA MER1_type -1000 1417 1366 1220 173 17 90 chr3 75772146 75772446 -151752132 + AluJo SINE Alu 1 278 -34 274 325 0 0 chr3 75772446 75772529 -151752049 + G-rich Low_complexity Low_complexity 6 88 0 219 360 0 0 chr3 75773192 75773328 -151751250 + G-rich Low_complexity Low_complexity 1 136 0 208 271 0 0 chr3 75773369 75773428 -151751150 + G-rich Low_complexity Low_complexity 1 59 0 266 206 15 0 chr3 75773574 75773642 -151750936 + GA-rich Low_complexity Low_complexity 5 73 0 * 285 98 0 0 chr3 75773640 75773681 -151750897 + (GAAAA)n Simple_repeat Simple_repeat 5 45 0 796 199 38 71 chr3 75773974 75774185 -151750393 + MER3 DNA MER1_type 1 204 -5 279 243 29 14 chr3 75774126 75774196 -151750382 - MER3 DNA MER1_type -97 112 42 * 1020 171 6 0 chr3 75775949 75776119 -151748459 + AluJb SINE Alu 135 305 -7 184 182 0 0 chr3 75776988 75777021 -151747557 - L2 LINE L2 -30 3242 3210 1615 134 153 4 chr3 75777038 75777292 -151747286 + AluSx SINE Alu 1 292 -20 1171 171 130 87 chr3 75777296 75777434 -151747144 + LTR54B LTR ERV1 8 139 -359 1943 119 58 31 chr3 75777434 75777728 -151746850 + AluSx SINE Alu 1 302 -10 1171 171 130 87 chr3 75777728 75777878 -151746700 + LTR54B LTR ERV1 139 281 -217 2240 95 26 3 chr3 75777878 75778183 -151746395 - AluSp SINE Alu -1 312 1 1171 171 130 87 chr3 75778183 75778362 -151746216 + LTR54B LTR ERV1 281 496 -2 381 239 254 20 chr3 75780156 75780353 -151744225 + MIR SINE MIR 12 254 -8 838 298 56 38 chr3 75780499 75780895 -151743683 + MLT1J2 LTR MaLR 38 440 -10 307 204 68 39 chr3 75781701 75781804 -151742774 + L1ME LINE L1 5715 5820 -301 1770 162 20 3 chr3 75783306 75783602 -151740976 + AluJb SINE Alu 1 301 -11 207 0 0 0 chr3 75783622 75783645 -151740933 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2195 96 4 0 chr3 75783647 75783927 -151740651 - AluSq SINE Alu -32 281 1 37 52 0 0 chr3 75784086 75784144 -151740434 + AT_rich Low_complexity Low_complexity 1 58 0 779 176 0 15 chr3 75784199 75784330 -151740248 - AluJb SINE Alu -12 300 172 231 206 32 32 chr3 75784962 75785025 -151739553 - Charlie8 DNA MER1_type -2263 154 92 404 298 0 8 chr3 75785056 75785180 -151739398 + MIR SINE MIR 119 241 -21 1553 170 3 62 chr3 75785440 75785746 -151738832 + AluJo SINE Alu 1 288 -24 248 303 136 0 chr3 75786303 75786435 -151738143 - MIR SINE MIR -77 185 36 2437 28 42 3 chr3 75786974 75787259 -151737319 + AluY SINE Alu 2 297 -14 270 0 0 0 chr3 75787355 75787385 -151737193 + (TTG)n Simple_repeat Simple_repeat 1 30 0 405 304 6 48 chr3 75787615 75787840 -151736738 + G-rich Low_complexity Low_complexity 1 215 0 286 205 26 0 chr3 75787888 75787966 -151736612 + GA-rich Low_complexity Low_complexity 1 80 0 203 386 0 0 chr3 75787967 75788068 -151736510 + G-rich Low_complexity Low_complexity 2 102 0 729 116 0 70 chr3 75788143 75788272 -151736306 + AluJb SINE Alu 11 130 -182 1704 187 7 0 chr3 75788280 75788569 -151736009 - AluJb SINE Alu -21 291 1 24 32 0 0 chr3 75788575 75788606 -151735972 + AT_rich Low_complexity Low_complexity 1 31 0 437 287 124 10 chr3 75789325 75789534 -151735044 + MIR SINE MIR 30 262 0 224 304 0 0 chr3 75789587 75789651 -151734927 - MIR SINE MIR -95 113 49 1227 260 61 26 chr3 75789912 75790405 -151734173 + L1ME3 LINE L1 5653 6162 0 3949 178 52 40 chr3 75791024 75791337 -151733241 + L1MB8 LINE L1 4857 5165 -1013 1535 216 21 0 chr3 75791337 75791620 -151732958 + AluJo SINE Alu 1 289 -23 3949 178 52 40 chr3 75791620 75792270 -151732308 + L1MB8 LINE L1 5165 5837 -341 785 189 0 0 chr3 75792270 75792402 -151732176 + FLAM_C SINE Alu 2 133 0 3949 178 52 40 chr3 75792402 75792744 -151731834 + L1MB8 LINE L1 5837 6173 -5 192 262 103 63 chr3 75792894 75793020 -151731558 + MIR3 SINE MIR 55 185 -23 301 288 152 0 chr3 75793100 75793232 -151731346 - MIR SINE MIR 0 262 111 840 250 81 110 chr3 75793233 75793509 -151731069 + HAL1 LINE L1 1828 2111 -396 987 199 0 0 chr3 75793509 75793670 -151730908 + FAM SINE Alu 1 161 -14 840 250 81 110 chr3 75793670 75794076 -151730502 + HAL1 LINE L1 2111 2490 -17 2555 64 0 0 chr3 75794079 75794376 -151730202 - AluY SINE Alu -14 297 1 727 111 10 0 chr3 75794978 75795077 -151729501 - AluSq SINE Alu -102 211 112 1734 193 3 13 chr3 75795159 75795464 -151729114 + AluJo SINE Alu 1 302 -10 2294 109 3 0 chr3 75795568 75795870 -151728708 + AluSx SINE Alu 1 303 -9 576 223 109 50 chr3 75796855 75797075 -151727503 + MIR SINE MIR 30 262 0 398 279 10 10 chr3 75797079 75797183 -151727395 - MIR SINE MIR -99 163 60 1890 130 69 0 chr3 75797316 75797593 -151726985 + AluJb SINE Alu 5 300 -12 249 33 0 0 chr3 75798242 75798272 -151726306 + (TG)n Simple_repeat Simple_repeat 2 31 0 1462 119 140 0 chr3 75798273 75798508 -151726070 - AluJb SINE Alu -33 279 12 212 305 48 57 chr3 75798550 75798655 -151725923 + L2 LINE L2 3210 3313 0 1694 182 0 3 chr3 75798678 75798974 -151725604 + AluJo SINE Alu 1 295 -17 283 131 49 33 chr3 75799557 75799618 -151724960 - LTR67 LTR ERVL -4 553 492 237 288 15 0 chr3 75799893 75799959 -151724619 + GA-rich Low_complexity Low_complexity 1 67 0 2097 147 0 6 chr3 75799984 75800297 -151724281 + AluJb SINE Alu 1 311 -1 1195 167 122 0 chr3 75801923 75802168 -151722410 - L1PA16 LINE L1 -1 6165 5891 361 299 71 19 chr3 75802215 75802426 -151722152 + L1ME LINE L1 5577 5798 -323 2123 132 7 0 chr3 75802450 75802745 -151721833 + AluSq SINE Alu 1 297 -16 2776 113 3 0 chr3 75802818 75803181 -151721397 + THE1B LTR MaLR 1 364 0 542 308 75 9 chr3 75803800 75804182 -151720396 + MLT1J LTR MaLR 65 511 0 231 204 0 0 chr3 75806266 75806320 -151718258 + (TATATG)n Simple_repeat Simple_repeat 4 57 0 225 260 0 41 chr3 75807105 75807178 -151717400 - L2 LINE L2 -208 3064 2995 2490 52 3 3 chr3 75807417 75807725 -151716853 + AluY SINE Alu 1 308 -3 183 155 69 86 chr3 75808055 75808113 -151716465 - MIR SINE MIR -153 109 53 1712 157 40 10 chr3 75808262 75808562 -151716016 + AluJb SINE Alu 1 309 -3 217 289 0 0 chr3 75808673 75808718 -151715860 - L2 LINE L2 -18 3254 3210 1385 44 6 0 chr3 75809059 75809219 -151715359 + L1PA5 LINE L1 5979 6139 -15 387 0 0 0 chr3 75809219 75809262 -151715316 + (TA)n Simple_repeat Simple_repeat 2 44 0 231 283 145 17 chr3 75809969 75810121 -151714457 - MER5A DNA MER1_type -1 188 4 265 297 103 36 chr3 75810142 75810282 -151714296 - MIR SINE MIR -63 145 29 408 302 64 12 chr3 75810815 75810987 -151713591 - MIR SINE MIR -34 228 48 908 250 106 26 chr3 75811020 75811501 -151713077 - MLT1G LTR MaLR 0 590 53 356 296 71 24 chr3 75811510 75811679 -151712899 - MIR SINE MIR -83 179 3 258 271 47 39 chr3 75813707 75813836 -151710742 + L1ME4a LINE L1 5592 5721 -400 847 196 26 0 chr3 75813838 75813991 -151710587 + FRAM SINE Alu 1 149 -27 260 252 87 69 chr3 75814001 75814219 -151710359 + L1ME4a LINE L1 5721 5942 -179 1307 142 9 9 chr3 75814236 75814447 -151710131 + MER2 DNA MER2_type 1 211 -134 586 206 0 0 chr3 75814590 75814692 -151709886 + AluJo SINE Alu 23 124 -188 1801 63 5 0 chr3 75814692 75814915 -151709663 + L1PA6 LINE L1 5900 6123 -31 505 60 0 15 chr3 75814915 75815001 -151709577 + L1PA6 LINE L1 6088 6154 0 1043 169 6 6 chr3 75815025 75815208 -151709370 + AluJo SINE Alu 130 312 0 1393 74 5 5 chr3 75816013 75816203 -151708375 + L1MA5A LINE L1 6098 6287 -10 32 26 0 0 chr3 75816207 75816246 -151708332 + AT_rich Low_complexity Low_complexity 1 39 0 1743 143 28 14 chr3 75816246 75816533 -151708045 - AluJb SINE Alu -21 291 1 225 233 0 0 chr3 75817760 75817803 -151706775 + MIR SINE MIR 210 252 -10 1460 166 8 26 chr3 75820337 75820602 -151703976 - AluJb SINE Alu -44 268 9 482 279 101 23 chr3 75820624 75820843 -151703735 + MIR SINE MIR 1 236 -26 221 250 0 0 chr3 75820847 75820891 -151703687 + (CA)n Simple_repeat Simple_repeat 2 45 0 2327 114 0 0 chr3 75821042 75821349 -151703229 + AluSx SINE Alu 1 307 -5 257 354 20 0 chr3 75821725 75821872 -151702706 + L2 LINE L2 2730 2879 -435 184 214 87 87 chr3 75822075 75822178 -151702400 + L2 LINE L2 3182 3284 -29 * 203 265 0 0 chr3 75822170 75822219 -151702359 - L3 LINE CR1 -134 1443 1395 306 274 189 0 chr3 75822402 75822508 -151702070 - MER5B DNA MER1_type -52 126 1 344 240 240 6 chr3 75822516 75822687 -151701891 - MER5C DNA MER1_type 0 324 114 269 247 0 78 chr3 75822700 75822777 -151701801 + AluJo SINE Alu 87 157 -145 720 186 0 0 chr3 75822822 75822935 -151701643 - FLAM_A SINE Alu -7 135 23 342 233 23 39 chr3 75822936 75823065 -151701513 - MER5C DNA MER1_type -196 128 2 2262 117 0 0 chr3 75823920 75824218 -151700360 + AluSx SINE Alu 1 298 -14 373 328 104 0 chr3 75824599 75824724 -151699854 - MIR SINE MIR -78 184 47 248 327 80 49 chr3 75825069 75825231 -151699347 + L2 LINE L2 2867 3033 -280 1989 97 65 11 chr3 75825621 75825900 -151698678 - AluSg1 SINE Alu -15 294 1 1787 155 0 34 chr3 75826561 75826857 -151697721 + AluJb SINE Alu 3 288 -24 974 174 0 43 chr3 75826861 75827045 -151697533 + AluJb SINE Alu 132 307 -5 2447 127 3 12 chr3 75827125 75827464 -151697114 - MER1B DNA MER1_type 0 337 2 2332 99 0 0 chr3 75828172 75828474 -151696104 - AluSx SINE Alu -10 302 1 411 279 128 29 chr3 75829159 75829363 -151695215 - MIR SINE MIR -32 230 7 195 194 32 81 chr3 75829946 75830008 -151694570 + MIR SINE MIR 88 146 -62 1830 127 47 10 chr3 75830307 75830606 -151693972 + AluSx SINE Alu 1 310 -2 297 279 93 23 chr3 75830889 75831018 -151693560 + MER103 DNA DNA 18 155 -11 280 253 13 0 chr3 75831711 75831786 -151692792 - Charlie8 DNA MER1_type -6 2411 2336 228 274 32 0 chr3 75831884 75831946 -151692632 - Charlie8 DNA MER1_type -2353 64 1 515 252 126 13 chr3 75832156 75832315 -151692263 + MIR SINE MIR 80 256 -6 262 143 54 18 chr3 75833261 75833373 -151691205 + (TA)n Simple_repeat Simple_repeat 2 117 0 1605 172 0 8 chr3 75833380 75833641 -151690937 - AluSx SINE Alu -9 303 45 2251 114 36 36 chr3 75833643 75834004 -151690574 - THE1B LTR MaLR 0 364 4 312 170 0 0 chr3 75834007 75834054 -151690524 - AluSx SINE Alu -255 47 1 297 89 0 0 chr3 75834088 75834133 -151690445 + (CA)n Simple_repeat Simple_repeat 1 45 0 5769 126 42 10 chr3 75834536 75835420 -151689158 + L1MC1 LINE L1 5416 6327 -6 2405 87 0 0 chr3 75835696 75835995 -151688583 - AluSc SINE Alu -10 299 1 1899 160 6 6 chr3 75836596 75836908 -151687670 + AluJo SINE Alu 1 312 0 336 83 0 0 chr3 75836978 75837026 -151687552 + (TC)n Simple_repeat Simple_repeat 1 48 0 234 311 184 40 chr3 75837256 75837603 -151686975 - L3 LINE CR1 -3 1574 1178 2339 88 0 0 chr3 75838065 75838362 -151686216 + AluSg SINE Alu 1 297 -13 2098 133 0 7 chr3 75838627 75838927 -151685651 - AluSx SINE Alu -14 298 1 665 176 0 17 chr3 75839129 75839227 -151685351 + AluJb SINE Alu 189 286 -26 370 0 0 39 chr3 75839227 75839279 -151685299 + (CA)n Simple_repeat Simple_repeat 1 50 0 665 176 0 17 chr3 75839279 75839299 -151685279 + AluJb SINE Alu 286 305 -7 457 328 57 5 chr3 75839347 75839539 -151685039 - MIR SINE MIR -16 246 45 1645 201 76 30 chr3 75839576 75840009 -151684569 + MLT1C LTR MaLR 7 459 -8 2489 67 0 7 chr3 75840544 75840842 -151683736 - AluSc SINE Alu -13 296 1 266 329 12 12 chr3 75841051 75841133 -151683445 + MER91A DNA MER1_type 4 85 -111 645 229 20 26 chr3 75842047 75842200 -151682378 + MIR SINE MIR 111 262 0 1936 146 7 0 chr3 75843007 75843295 -151681283 - AluJb SINE Alu -22 290 1 567 164 52 17 chr3 75843301 75843417 -151681161 - MIR SINE MIR -69 193 74 664 240 82 14 chr3 75843446 75843654 -151680924 + MER113 DNA MER1_type? 79 300 -221 348 83 0 0 chr3 75843654 75843702 -151680876 + (TC)n Simple_repeat Simple_repeat 2 49 0 4270 109 72 8 chr3 75843713 75844030 -151680548 + MER41B LTR ERV1 1 296 -339 2146 117 3 3 chr3 75844030 75844330 -151680248 + AluSq SINE Alu 1 300 -13 4270 109 72 8 chr3 75844330 75844609 -151679969 + MER41B LTR ERV1 296 635 0 434 320 59 5 chr3 75844612 75844834 -151679744 + MER113 DNA MER1_type? 288 521 0 599 288 104 35 chr3 75844936 75845283 -151679295 + L3 LINE CR1 814 1184 -393 316 299 91 32 chr3 75845285 75845472 -151679106 + L2 LINE L2 3052 3249 -64 575 265 51 31 chr3 75845472 75845668 -151678910 - MER63A DNA MER1_type -3 207 8 183 91 30 61 chr3 75845757 75845790 -151678788 + L3 LINE CR1 1455 1486 -91 765 203 19 19 chr3 75846337 75846495 -151678083 + AluJb SINE Alu 149 306 -6 2304 73 21 0 chr3 75846664 75846950 -151677628 - AluSc SINE Alu -17 292 1 246 301 87 29 chr3 75847165 75847268 -151677310 + MIR SINE MIR 22 130 -78 1905 153 0 7 chr3 75847529 75847824 -151676754 - AluJb SINE Alu -19 293 1 4628 54 0 2 chr3 75847858 75848396 -151676182 + L1PA5 LINE L1 5612 6148 -6 687 57 0 0 chr3 75849546 75849634 -151674944 + (CCA)n Simple_repeat Simple_repeat 1 88 0 941 181 0 0 chr3 75849658 75849802 -151674776 + FRAM SINE Alu 2 145 -31 1616 104 192 12 chr3 75849947 75850197 -151674381 - AluSg SINE Alu -5 295 1 246 276 13 53 chr3 75850372 75850448 -151674130 + L2 LINE L2 2715 2787 -527 1053 248 64 61 chr3 75850482 75850922 -151673656 - MLT1H LTR MaLR -16 533 93 1261 171 73 24 chr3 75850922 75851168 -151673410 - AluJo SINE Alu -20 292 35 349 350 96 26 chr3 75851251 75851679 -151672899 + L2 LINE L2 2849 3306 -7 715 160 0 34 chr3 75852173 75852292 -151672286 + FLAM_C SINE Alu 17 131 -12 21 0 0 0 chr3 75852295 75852316 -151672262 + AT_rich Low_complexity Low_complexity 1 21 0 2296 85 20 10 chr3 75852405 75852710 -151671868 - AluSx SINE Alu -4 308 1 1887 216 83 36 chr3 75852877 75853349 -151671229 + MLT1F LTR MaLR 5 498 -44 749 161 0 0 chr3 75854169 75854281 -151670297 - AluSg/x SINE Alu -7 303 192 1348 169 9 0 chr3 75854888 75855107 -151669471 - AluJb SINE Alu -28 284 64 3084 135 25 29 chr3 75855108 75855221 -151669357 - MER41B LTR ERV1 0 635 523 2080 132 0 3 chr3 75855221 75855517 -151669061 + AluY SINE Alu 1 295 -16 3084 135 25 29 chr3 75855517 75855930 -151668648 - MER41B LTR ERV1 -112 523 111 269 187 32 24 chr3 75856408 75856531 -151668047 + (TTAAA)n Simple_repeat Simple_repeat 1 124 0 21 0 0 0 chr3 75856752 75856773 -151667805 + AT_rich Low_complexity Low_complexity 1 21 0 2045 179 13 37 chr3 75858416 75858790 -151665788 - MLT1A1 LTR MaLR 0 365 1 2425 77 0 3 chr3 75859203 75859501 -151665077 + AluSx SINE Alu 2 298 -14 826 167 123 54 chr3 75859568 75859772 -151664806 - MER20 DNA MER1_type -1 218 1 1688 155 22 4 chr3 75859922 75860225 -151664353 - AluJb SINE Alu 0 308 1 317 178 55 27 chr3 75860770 75860843 -151663735 + MIR SINE MIR 115 189 -73 1980 141 0 10 chr3 75860874 75861172 -151663406 + AluSx SINE Alu 1 295 -17 2288 82 7 3 chr3 75861432 75861725 -151662853 + AluSg SINE Alu 1 294 -16 234 156 0 0 chr3 75861766 75861811 -151662767 + (TG)n Simple_repeat Simple_repeat 2 46 0 1687 169 13 20 chr3 75862372 75862674 -151661904 + AluJo SINE Alu 1 300 -12 271 286 22 11 chr3 75862714 75862805 -151661773 + GA-rich Low_complexity Low_complexity 2 93 0 383 256 31 99 chr3 75863213 75863352 -151661226 - MER5A DNA MER1_type 0 189 65 994 109 0 0 chr3 75863352 75863489 -151661089 - L1PA13 LINE L1 0 6163 6027 383 256 31 99 chr3 75863489 75863540 -151661038 - MER5A DNA MER1_type -124 65 12 244 291 0 58 chr3 75863536 75863576 -151661002 - L2 LINE L2 -3 3310 3276 * 2984 134 19 0 chr3 75863576 75864002 -151660576 + MER57B LTR ERV1 1 434 0 244 291 0 58 chr3 75864002 75864047 -151660531 - L2 LINE L2 -37 3276 3230 23 68 0 0 chr3 75864086 75864130 -151660448 + AT_rich Low_complexity Low_complexity 1 44 0 1726 171 3 16 chr3 75865754 75866058 -151658520 - AluJo SINE Alu -11 301 2 2390 100 0 6 chr3 75866071 75866382 -151658196 - AluSx SINE Alu -3 309 1 225 323 15 0 chr3 75867379 75867444 -151657134 + L2 LINE L2 3242 3307 -6 1473 149 17 0 chr3 75867972 75868245 -151656333 + AluJb SINE Alu 68 344 0 913 152 43 49 chr3 75868996 75869090 -151655488 + MER30 DNA MER1_type 1 95 -135 845 81 0 8 chr3 75869090 75869214 -151655364 + (GGAA)n Simple_repeat Simple_repeat 2 124 0 913 152 43 49 chr3 75869214 75869303 -151655275 + MER30 DNA MER1_type 95 183 -47 350 301 74 6 chr3 75869334 75869497 -151655081 + MER3 DNA MER1_type 15 188 -21 * 1551 171 66 6 chr3 75869477 75869839 -151654739 + MER3 DNA MER1_type 2236 2619 0 1445 205 156 19 chr3 75869885 75870295 -151654283 - Charlie4a DNA MER1_type -6 502 37 2405 88 0 0 chr3 75870673 75870979 -151653599 + AluY SINE Alu 1 306 -5 789 202 28 11 chr3 75871043 75871221 -151653357 - MIR SINE MIR -5 257 77 466 256 126 16 chr3 75872806 75872997 -151651581 + MIR SINE MIR 29 240 -22 321 312 83 0 chr3 75873053 75873162 -151651416 - MIR SINE MIR -76 186 69 189 222 0 0 chr3 75873236 75873299 -151651279 + GA-rich Low_complexity Low_complexity 1 63 0 718 180 78 0 chr3 75873365 75873493 -151651085 + FLAM_C SINE Alu 2 139 -4 353 264 138 12 chr3 75874371 75874538 -151650040 - MIR SINE MIR -28 234 47 1051 255 90 54 chr3 75874731 75874856 -151649722 + L1ME3A LINE L1 5465 5584 -586 1912 139 0 14 chr3 75874856 75875150 -151649428 + AluSx SINE Alu 1 290 -22 1051 255 90 54 chr3 75875150 75875373 -151649205 + L1ME3A LINE L1 5584 5839 -331 1677 191 3 25 chr3 75875373 75875692 -151648886 + AluJb SINE Alu 1 312 0 1051 255 90 54 chr3 75875692 75875844 -151648734 + L1ME3A LINE L1 5839 5984 -186 1952 127 36 0 chr3 75875895 75876200 -151648378 - AluSq SINE Alu 0 315 1 1983 154 0 0 chr3 75876847 75877152 -151647426 + AluSx SINE Alu 1 305 -7 1438 154 150 0 chr3 75877586 75877739 -151646839 - AluJo SINE Alu -2 310 181 426 20 0 0 chr3 75877739 75877790 -151646788 + (TTA)n Simple_repeat Simple_repeat 2 52 0 1438 154 150 0 chr3 75877790 75877902 -151646676 - AluJo SINE Alu -131 181 5 2478 71 0 7 chr3 75877940 75878248 -151646330 - AluY SINE Alu -5 306 1 22 0 0 0 chr3 75878749 75878771 -151645807 + AT_rich Low_complexity Low_complexity 1 22 0 2350 57 20 10 chr3 75880264 75880562 -151644016 - AluY SINE Alu -10 301 1 1849 145 32 26 chr3 75880694 75881004 -151643574 + AluSx SINE Alu 1 312 0 1692 125 79 18 chr3 75881190 75881470 -151643108 + AluSx SINE Alu 1 297 -15 2169 100 0 4 chr3 75881477 75881777 -151642801 + AluSc SINE Alu 1 299 0 269 336 28 9 chr3 75881918 75882025 -151642553 + L2 LINE L2 3200 3308 -5 240 350 0 43 chr3 75882036 75882153 -151642425 - MIR SINE MIR -122 140 29 919 261 163 0 chr3 75883383 75883720 -151640858 + MER113 DNA MER1_type? 13 404 -117 1605 134 95 11 chr3 75883806 75884090 -151640488 - AluSx SINE Alu 0 312 5 25 0 0 0 chr3 75884516 75884541 -151640037 + AT_rich Low_complexity Low_complexity 1 25 0 558 200 11 0 chr3 75884644 75884739 -151639839 + FRAM SINE Alu 31 126 -50 360 274 113 0 chr3 75884849 75884955 -151639623 + MIR SINE MIR 117 234 -28 957 252 14 5 chr3 75885071 75885285 -151639293 - MIR SINE MIR -41 221 6 289 292 44 0 chr3 75885365 75885478 -151639100 + L1MC4 LINE L1 7924 8041 -1 719 283 28 61 chr3 75886282 75886674 -151637904 + L1MC4a LINE L1 5517 5895 -1913 32 0 0 0 chr3 75886733 75886765 -151637813 + AT_rich Low_complexity Low_complexity 1 32 0 850 163 111 58 chr3 75887441 75887631 -151636947 - MER20 DNA MER1_type -5 214 15 814 215 65 20 chr3 75887830 75888030 -151636548 + MER3 DNA MER1_type 1 209 0 230 277 0 31 chr3 75888052 75888117 -151636461 + L2 LINE L2 3251 3313 0 2317 178 16 13 chr3 75888222 75888672 -151635906 + L1MB3 LINE L1 5733 6183 0 2284 84 0 0 chr3 75889065 75889349 -151635229 + AluSc SINE Alu 1 284 -25 31 0 0 0 chr3 75890585 75890616 -151633962 + AT_rich Low_complexity Low_complexity 1 31 0 185 319 60 9 chr3 75890899 75891015 -151633563 - MIR SINE MIR -59 203 82 1066 127 7 0 chr3 75891147 75891336 -151633242 + FRAM SINE Alu 2 191 0 363 344 104 0 chr3 75891753 75891945 -151632633 + MIR SINE MIR 48 259 -3 246 324 88 0 chr3 75892324 75892426 -151632152 + L2 LINE L2 3161 3271 -1 294 148 0 0 chr3 75892438 75892492 -151632086 + (GGGA)n Simple_repeat Simple_repeat 1 54 0 561 129 0 0 chr3 75892494 75892587 -151631991 + (TGGA)n Simple_repeat Simple_repeat 1 93 0 1832 189 157 40 chr3 75892610 75893087 -151631491 - MLT1F LTR MaLR 0 542 10 972 131 0 0 chr3 75893616 75893753 -151630825 + AluJo SINE Alu 1 137 -175 38 22 0 0 chr3 75893774 75893819 -151630759 + AT_rich Low_complexity Low_complexity 1 45 0 2042 133 0 7 chr3 75894489 75894789 -151629789 + AluSx SINE Alu 1 298 -14 215 204 0 56 chr3 75895300 75895354 -151629224 - L3b LINE CR1 -14 1569 1519 2061 124 0 38 chr3 75895571 75895885 -151628693 + AluSx SINE Alu 1 302 -10 381 281 96 43 chr3 75895917 75896198 -151628380 + L2 LINE L2 2844 3139 -174 838 229 105 14 chr3 75896279 75896489 -151628089 - MIR SINE MIR -11 251 23 285 215 46 15 chr3 75896515 75896580 -151627998 + L2 LINE L2 3205 3271 -42 2322 104 7 0 chr3 75896760 75897069 -151627509 - AluSq SINE Alu -2 311 1 379 237 10 41 chr3 75898274 75898371 -151626207 + MIR SINE MIR 33 126 -136 2143 123 0 10 chr3 75898423 75898723 -151625855 + AluSx SINE Alu 1 297 -15 646 205 0 105 chr3 75898968 75899020 -151625558 - MER3 DNA MER1_type -39 123 67 2168 112 30 7 chr3 75899020 75899325 -151625253 + AluSx SINE Alu 1 312 0 646 205 0 105 chr3 75899325 75899462 -151625116 - MER3 DNA MER1_type -95 67 1 290 267 153 20 chr3 75899533 75899683 -151624895 + MIR SINE MIR 23 192 -70 2169 125 39 36 chr3 75899715 75900076 -151624502 + THE1B LTR MaLR 3 364 0 1200 188 14 0 chr3 75901058 75901276 -151623302 - AluJo SINE Alu -7 305 85 22 35 0 0 chr3 75901714 75901743 -151622835 + AT_rich Low_complexity Low_complexity 1 29 0 549 235 5 130 chr3 75901897 75902097 -151622481 + MIR SINE MIR 69 243 -19 2119 122 0 3 chr3 75902154 75902441 -151622137 + AluSx SINE Alu 1 286 -26 342 0 0 0 chr3 75902656 75902694 -151621884 + (TG)n Simple_repeat Simple_repeat 1 38 0 1545 168 0 64 chr3 75902694 75902991 -151621587 - AluJb SINE Alu -33 279 2 2202 121 14 3 chr3 75905016 75905313 -151619265 - AluSx SINE Alu -12 300 1 366 281 29 53 chr3 75905401 75905572 -151619006 + MIR SINE MIR 65 231 -31 489 180 110 0 chr3 75905613 75905713 -151618865 + MER96B DNA MER1_type? 1 111 -306 1458 196 94 0 chr3 75905738 75906014 -151618564 - AluJb SINE Alu -10 302 1 259 288 44 75 chr3 75907207 75907367 -151617211 - MIR SINE MIR -61 201 47 318 305 84 18 chr3 75907581 75907748 -151616830 - MER5B DNA MER1_type 0 178 1 2170 128 0 3 chr3 75907830 75908135 -151616443 - AluSx SINE Alu -8 304 1 313 250 29 0 chr3 75908246 75908350 -151616228 - MER113 DNA MER1_type? -405 116 10 195 42 0 0 chr3 75908355 75908379 -151616199 + (ATG)n Simple_repeat Simple_repeat 3 26 0 346 231 0 48 chr3 75909016 75909120 -151615458 - MER113 DNA MER1_type? -44 477 379 1055 170 0 0 chr3 75909136 75909295 -151615283 + FRAM SINE Alu 1 158 -18 2278 108 3 16 chr3 75909303 75909619 -151614959 + AluSx SINE Alu 1 312 0 247 240 107 0 chr3 75909622 75909697 -151614881 - MER113 DNA MER1_type? -437 84 2 2337 111 0 0 chr3 75910165 75910472 -151614106 + AluSq SINE Alu 1 307 -6 227 362 11 0 chr3 75910590 75910684 -151613894 + MIR SINE MIR 162 256 -6 281 295 21 42 chr3 75911037 75911132 -151613446 - MER5A DNA MER1_type -88 101 9 1667 151 14 21 chr3 75911252 75911543 -151613035 - AluJo SINE Alu -3 309 21 256 232 0 0 chr3 75911923 75911979 -151612599 - L2 LINE L2 -2 3311 3256 2289 114 0 0 chr3 75912424 75912723 -151611855 + AluSx SINE Alu 1 299 -13 464 219 35 123 chr3 75912940 75913168 -151611410 - MLT1G LTR MaLR 0 590 383 1156 159 0 0 chr3 75914276 75914452 -151610126 + FRAM SINE Alu 1 168 -8 440 231 46 58 chr3 75914579 75914752 -151609826 + MIR SINE MIR 92 262 0 2466 65 0 0 chr3 75915806 75916097 -151608481 + AluY SINE Alu 1 291 -20 1360 121 225 12 chr3 75916308 75916557 -151608021 + AluSg1 SINE Alu 1 302 -7 1358 86 5 5 chr3 75917507 75917694 -151606884 - L1PA10 LINE L1 -12 6156 5970 2400 69 0 13 chr3 75918403 75918706 -151605872 - AluY SINE Alu -12 299 1 225 341 11 0 chr3 75919209 75919300 -151605278 - MIR SINE MIR -7 255 164 312 376 48 20 chr3 75919365 75919615 -151604963 - L2 LINE L2 -50 3222 2966 25 83 0 0 chr3 75919668 75919728 -151604850 + AT_rich Low_complexity Low_complexity 1 60 0 392 288 41 7 chr3 75919875 75920021 -151604557 - MIR SINE MIR -49 213 63 2089 121 7 3 chr3 75920882 75921189 -151603389 - AluSx SINE Alu -4 308 1 964 99 7 79 chr3 75921735 75921887 -151602691 - AluSq/x SINE Alu -172 141 1 671 134 0 0 chr3 75921961 75922058 -151602520 - HY3 scRNA scRNA -3 98 2 1751 227 102 41 chr3 75922275 75922831 -151601747 - MLT1G1 LTR MaLR -3 592 3 309 203 0 0 chr3 75924536 75924605 -151599973 + L1MC4 LINE L1 6635 6703 -1339 351 0 0 0 chr3 75924924 75924963 -151599615 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 1520 186 62 0 chr3 75924975 75925113 -151599465 - AluJo SINE Alu -38 274 146 243 0 0 0 chr3 75925113 75925140 -151599438 + (TTTA)n Simple_repeat Simple_repeat 4 30 0 1520 186 62 0 chr3 75925140 75925259 -151599319 - AluJo SINE Alu -166 146 1 2189 134 0 0 chr3 75926010 75926315 -151598263 - AluSx SINE Alu -7 305 1 302 185 198 12 chr3 75926339 75926420 -151598158 + MER5A DNA MER1_type 14 109 -80 281 313 8 53 chr3 75926743 75926874 -151597704 - L2 LINE L2 -218 3054 2930 204 205 157 24 chr3 75926941 75927024 -151597554 - L2 LINE L2 -493 2821 2728 2121 111 21 0 chr3 75927352 75927641 -151596937 + AluSq SINE Alu 1 295 -18 245 330 21 0 chr3 75927723 75927820 -151596758 + MIR SINE MIR 150 248 -14 1795 151 0 32 chr3 75927903 75928188 -151596390 + AluSx SINE Alu 1 276 -36 204 271 0 0 chr3 75929249 75929308 -151595270 + MIR SINE MIR 49 107 -155 819 284 26 0 chr3 75929417 75929649 -151594929 + LTR16A LTR ERVL 105 342 -108 1946 138 0 0 chr3 75930429 75930697 -151593881 + AluSx SINE Alu 38 305 -7 187 245 19 19 chr3 75930717 75930770 -151593808 + L2 LINE L2 3212 3264 -8 2319 116 3 0 chr3 75931030 75931341 -151593237 + AluSx SINE Alu 1 312 0 2414 97 0 0 chr3 75931388 75931697 -151592881 + AluY SINE Alu 1 309 -2 589 221 15 0 chr3 75932036 75932167 -151592411 + MER94 DNA DNA 1 133 -1 414 286 107 29 chr3 75932268 75932576 -151592002 - L1ME4a LINE L1 -191 5930 5599 182 348 0 0 chr3 75932735 75932804 -151591774 + L2 LINE L2 2908 2976 -337 954 128 0 0 chr3 75932969 75933102 -151591476 + FLAM_C SINE Alu 1 133 0 465 280 60 15 chr3 75933331 75933531 -151591047 + MIR SINE MIR 51 259 -3 363 358 112 4 chr3 75934097 75934329 -151590249 - MIR SINE MIR -2 260 4 2262 140 78 12 chr3 75934640 75935062 -151589516 + L1MB3 LINE L1 5727 6176 -7 337 215 21 0 chr3 75936378 75936471 -151588107 - MIR SINE MIR -122 140 46 186 43 0 0 chr3 75936911 75936934 -151587644 + (TTCA)n Simple_repeat Simple_repeat 2 24 0 274 261 167 22 chr3 75936935 75937115 -151587463 - L2 LINE L2 -13 3300 3095 969 193 47 14 chr3 75937153 75937365 -151587213 - MER20 DNA MER1_type 0 219 1 414 299 89 18 chr3 75937372 75937596 -151586982 + MIR SINE MIR 11 250 -12 259 274 45 76 chr3 75937754 75937911 -151586667 + MLT1K LTR MaLR 2 153 -435 1963 136 36 0 chr3 75938066 75938346 -151586232 + AluSx SINE Alu 1 290 -22 346 275 38 38 chr3 75938505 75938636 -151585942 + MLT1K LTR MaLR 458 588 0 768 209 94 0 chr3 75939020 75939211 -151585367 - MER3 DNA MER1_type 0 209 1 369 241 7 51 chr3 75939534 75939671 -151584907 - MER5A DNA MER1_type -48 141 11 24 32 0 0 chr3 75940365 75940396 -151584182 + AT_rich Low_complexity Low_complexity 1 31 0 230 338 0 0 chr3 76041252 76041326 -151483252 + MIR SINE MIR 84 157 -105 27 29 0 0 chr3 76041426 76041460 -151483118 + AT_rich Low_complexity Low_complexity 1 34 0 1351 237 68 3 chr3 76041625 76041946 -151482632 + MLT2C1 LTR ERVL 1 342 -55 274 107 36 0 chr3 76041956 76042012 -151482566 + CT-rich Low_complexity Low_complexity 1 58 0 201 337 31 31 chr3 76042354 76042452 -151482126 + MIR3 SINE MIR 77 174 -34 23 0 0 0 chr3 76042749 76042772 -151481806 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr3 76043280 76043307 -151481271 + AT_rich Low_complexity Low_complexity 1 27 0 232 243 29 0 chr3 76043960 76044030 -151480548 + (TTAA)n Simple_repeat Simple_repeat 3 74 0 249 339 18 18 chr3 76046369 76046481 -151478097 + L2 LINE L2 3199 3310 -3 182 298 0 18 chr3 76046513 76046570 -151478008 + MIR SINE MIR 132 187 -75 1225 206 48 6 chr3 76046891 76047226 -151477352 - MER3 DNA MER1_type 0 2582 2234 293 214 0 0 chr3 76047277 76047333 -151477245 - MER3 DNA MER1_type -107 102 47 315 0 0 0 chr3 76047675 76047710 -151476868 + (TG)n Simple_repeat Simple_repeat 2 36 0 2027 104 4 0 chr3 76049020 76049335 -151475243 + AluSc SINE Alu 1 316 0 28 86 0 0 chr3 76049352 76049422 -151475156 + AT_rich Low_complexity Low_complexity 1 70 0 37 23 0 0 chr3 76049542 76049586 -151474992 + AT_rich Low_complexity Low_complexity 1 44 0 433 262 106 42 chr3 76049610 76049760 -151474818 - L1ME2 LINE L1 -177 5987 5790 23 33 0 0 chr3 76049760 76049790 -151474788 + AT_rich Low_complexity Low_complexity 1 30 0 327 301 42 48 chr3 76049834 76050000 -151474578 + L2 LINE L2 3140 3304 -9 314 180 27 15 chr3 76050087 76050174 -151474404 + L1ME LINE L1 5713 5796 -370 291 263 31 34 chr3 76050595 76050758 -151473820 + L1ME LINE L1 5324 5485 -677 29 28 0 0 chr3 76051034 76051070 -151473508 + AT_rich Low_complexity Low_complexity 1 36 0 3476 162 71 124 chr3 76051347 76051387 -151473191 - L1MA8 LINE L1 -10 6281 6240 2023 181 26 21 chr3 76051387 76051581 -151472997 + MSTB1 LTR MaLR 1 193 -239 2091 113 3 0 chr3 76051581 76051873 -151472705 + AluSx SINE Alu 1 293 -19 2023 181 26 21 chr3 76051873 76052108 -151472470 + MSTB1 LTR MaLR 193 432 0 3476 162 71 124 chr3 76052108 76052618 -151471960 - L1MA8 LINE L1 -51 6240 5820 180 0 0 0 chr3 76052618 76052638 -151471940 + (CA)n Simple_repeat Simple_repeat 2 21 0 3476 162 71 124 chr3 76052638 76053203 -151471375 - L1MA8 LINE L1 -471 5820 5226 34 79 0 0 chr3 76053367 76053443 -151471135 + AT_rich Low_complexity Low_complexity 1 76 0 544 239 63 58 chr3 76053487 76053692 -151470886 + MLT1J2 LTR MaLR 75 280 -170 1801 115 0 15 chr3 76054028 76054298 -151470280 - AluSc SINE Alu -41 268 3 22 0 0 0 chr3 76054891 76054913 -151469665 + AT_rich Low_complexity Low_complexity 1 22 0 254 330 117 32 chr3 76054918 76055106 -151469472 + MIR SINE MIR 53 256 -6 281 273 23 45 chr3 76055420 76055508 -151469070 - MIR SINE MIR -21 241 156 7173 216 20 23 chr3 76055676 76058038 -151466540 - L1P4 LINE L1 -345 5821 3471 7395 95 4 20 chr3 76058080 76059154 -151465424 - MER11C LTR ERVK -14 1057 1 531 245 0 26 chr3 76059155 76059310 -151465268 - L1 LINE L1 -2673 4892 4742 352 248 78 35 chr3 76059406 76059547 -151465031 - L1M LINE L1 -2408 5400 5254 185 62 0 31 chr3 76059601 76059633 -151464945 + (TTA)n Simple_repeat Simple_repeat 2 32 0 336 331 7 28 chr3 76060348 76060493 -151464085 + MER69 DNA AcHobo 410 551 -675 450 256 43 14 chr3 76060525 76060732 -151463846 + MER69 DNA AcHobo 2314 2526 0 271 303 22 0 chr3 76060919 76061008 -151463570 - MIR SINE MIR -96 166 76 600 213 0 7 chr3 76061181 76061322 -151463256 - L1MC3 LINE L1 -1470 6315 6176 423 153 176 0 chr3 76061326 76061411 -151463167 + L1MC3 LINE L1 6034 6133 -1652 2249 134 17 3 chr3 76062992 76063349 -151461229 + THE1B LTR MaLR 1 362 -2 6910 127 14 83 chr3 76063396 76064687 -151459891 + THE1B-int LTR MaLR 17 1218 -362 3692 220 63 22 chr3 76064856 76065893 -151458685 - Tigger6a DNA MER2_type -4 1079 1 480 350 34 19 chr3 76066617 76066823 -151457755 - MIR SINE MIR -31 231 23 25 51 0 0 chr3 76067868 76067907 -151456671 + AT_rich Low_complexity Low_complexity 1 39 0 4166 206 33 33 chr3 76068761 76069993 -151454585 - L1 LINE L1 -2883 4682 3438 * 5583 52 6 0 chr3 76069990 76070704 -151453874 - L1P LINE L1 -1096 5050 4333 945 92 0 0 chr3 76070704 76070835 -151453743 - L1P LINE L1 -4145 2001 1871 7153 50 1 0 chr3 76070835 76071855 -151452723 + L1PA5 LINE L1 5121 6141 -13 233 185 8 138 chr3 76071881 76072011 -151452567 - L1 LINE L1 -4110 3455 3343 6171 181 42 29 chr3 76072019 76072060 -151452518 + L1MA6 LINE L1 4062 4101 -2199 2282 74 0 7 chr3 76072060 76072356 -151452222 - AluY SINE Alu -17 294 1 6171 181 42 29 chr3 76072356 76074013 -151450565 + L1MA6 LINE L1 4101 5795 -505 207 100 0 0 chr3 76074022 76074052 -151450526 + (TA)n Simple_repeat Simple_repeat 1 30 0 207 0 0 0 chr3 76074087 76074110 -151450468 + (TG)n Simple_repeat Simple_repeat 2 24 0 228 163 0 0 chr3 76074183 76074226 -151450352 + (CATA)n Simple_repeat Simple_repeat 2 44 0 279 114 0 0 chr3 76074426 76074470 -151450108 + (G)n Simple_repeat Simple_repeat 1 44 0 189 273 0 26 chr3 76074435 76074589 -151449989 + GA-rich Low_complexity Low_complexity 1 150 0 * 235 225 0 45 chr3 76074643 76074732 -151449846 + G-rich Low_complexity Low_complexity 1 85 0 1902 197 33 7 chr3 76074770 76075192 -151449386 + L1MA6 LINE L1 5859 6291 -9 21 0 0 0 chr3 76077846 76077867 -151446711 + AT_rich Low_complexity Low_complexity 1 21 0 2070 116 14 0 chr3 76078933 76079225 -151445353 + AluSx SINE Alu 1 296 -16 288 143 0 0 chr3 76079793 76079849 -151444729 + (TG)n Simple_repeat Simple_repeat 2 57 0 210 171 0 0 chr3 76079848 76079889 -151444689 + (TA)n Simple_repeat Simple_repeat 1 41 0 * 236 200 15 0 chr3 76080281 76080346 -151444232 + (TA)n Simple_repeat Simple_repeat 1 66 0 1911 135 14 0 chr3 76080417 76080706 -151443872 + AluSc SINE Alu 11 303 -6 524 168 0 20 chr3 76082011 76082112 -151442466 - L1PA16 LINE L1 0 6166 6068 28 61 0 0 chr3 76082254 76082303 -151442275 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr3 76082358 76082387 -151442191 + AT_rich Low_complexity Low_complexity 1 29 0 279 0 0 0 chr3 76083147 76083178 -151441400 + (TC)n Simple_repeat Simple_repeat 2 32 0 * 303 28 0 0 chr3 76083177 76083213 -151441365 + (TA)n Simple_repeat Simple_repeat 1 36 0 182 333 0 0 chr3 76084102 76084162 -151440416 - MIR SINE MIR -85 123 64 232 365 59 0 chr3 76084182 76084267 -151440311 - MIR3 SINE MIR -117 91 2 180 405 44 6 chr3 76084471 76084629 -151439949 + MIR3 SINE MIR 33 196 -12 1003 242 162 52 chr3 76085227 76085362 -151439216 - MLT1D LTR MaLR -6 499 380 1811 137 52 24 chr3 76085362 76085690 -151438888 + MER1B DNA MER1_type 1 337 0 1003 242 162 52 chr3 76085690 76085980 -151438598 - MLT1D LTR MaLR -125 380 27 1536 223 29 21 chr3 76086002 76086379 -151438199 - MLT1B LTR MaLR 0 390 11 261 250 139 65 chr3 76086552 76086660 -151437918 + L2 LINE L2 3196 3311 -2 5860 225 146 32 chr3 76087587 76089162 -151435416 - MER52A LTR ERV1 0 1755 1 462 18 0 0 chr3 76089668 76089723 -151434855 + (CA)n Simple_repeat Simple_repeat 2 56 0 192 40 0 0 chr3 76090417 76090442 -151434136 + (TG)n Simple_repeat Simple_repeat 2 26 0 245 311 147 38 chr3 76090488 76090726 -151433852 + L2 LINE L2 3016 3279 -34 213 376 9 18 chr3 76091324 76091433 -151433145 + L3b LINE CR1 1270 1377 -206 1629 202 70 6 chr3 76092169 76092376 -151432202 - MLT1A1 LTR MaLR -2 363 171 192 40 0 0 chr3 76092376 76092401 -151432177 + (TTG)n Simple_repeat Simple_repeat 1 25 0 2078 122 0 3 chr3 76092401 76092682 -151431896 - AluSx SINE Alu -32 280 1 1629 202 70 6 chr3 76092682 76092819 -151431759 - MLT1A1 LTR MaLR -193 172 1 465 123 0 14 chr3 76093278 76093351 -151431227 + L1PB4 LINE L1 6073 6144 -12 1355 130 9 5 chr3 76093454 76093670 -151430908 - L1PA7 LINE L1 -1 6153 5937 29 28 0 0 chr3 76095001 76095037 -151429541 + AT_rich Low_complexity Low_complexity 1 36 0 1856 192 45 5 chr3 76095061 76095457 -151429121 - L1MC1 LINE L1 0 6333 5922 588 202 0 21 chr3 76095457 76095634 -151428944 + MER8 DNA MER2_type 1 239 0 3655 204 24 28 chr3 76095634 76097071 -151427507 - L1MC1 LINE L1 -410 5923 4500 492 328 93 34 chr3 76097834 76098212 -151426366 - L1M2 LINE L1 -5552 1297 898 26 50 0 0 chr3 76098324 76098364 -151426214 + GC_rich Low_complexity Low_complexity 1 40 0 197 293 24 24 chr3 76098604 76098686 -151425892 + MIR SINE MIR 175 256 -6 265 145 0 58 chr3 76099202 76099271 -151425307 - MLT2B1 LTR ERVL 0 520 456 253 60 80 0 chr3 76099273 76099323 -151425255 + GA-rich Low_complexity Low_complexity 3 56 0 1837 204 13 11 chr3 76099323 76099705 -151424873 - MLT2D LTR ERVL -21 533 1 24 0 0 0 chr3 76100958 76100982 -151423596 + AT_rich Low_complexity Low_complexity 1 24 0 257 376 10 10 chr3 76101148 76101249 -151423329 + MIR SINE MIR 2 102 -160 192 77 0 0 chr3 76101471 76101497 -151423081 + (TA)n Simple_repeat Simple_repeat 2 27 0 204 158 0 0 chr3 76102171 76102209 -151422369 + (TATG)n Simple_repeat Simple_repeat 3 40 0 21 0 0 0 chr3 76102239 76102260 -151422318 + AT_rich Low_complexity Low_complexity 1 21 0 2298 79 0 20 chr3 76102503 76102808 -151421770 - AluY SINE Alu -12 299 1 25 31 0 0 chr3 76103084 76103116 -151421462 + AT_rich Low_complexity Low_complexity 1 32 0 1201 126 23 42 chr3 76103328 76103543 -151421035 - LTR8 LTR ERV1 -108 583 373 7677 22 0 0 chr3 76103587 76104511 -151420067 - L1PA2 LINE L1 -1 6154 5230 439 220 10 10 chr3 76104520 76104620 -151419958 - U3 snRNA snRNA -42 175 76 21 82 0 0 chr3 76105611 76105660 -151418918 + AT_rich Low_complexity Low_complexity 1 49 0 31 26 0 0 chr3 76105803 76105841 -151418737 + AT_rich Low_complexity Low_complexity 1 38 0 348 296 53 42 chr3 76106442 76106631 -151417947 + MLT1J2 LTR MaLR 26 216 -234 252 0 0 0 chr3 76107399 76107427 -151417151 + (CA)n Simple_repeat Simple_repeat 2 29 0 281 382 34 10 chr3 76108405 76108609 -151415969 - HAL1 LINE L1 -1791 716 508 2666 26 0 3 chr3 76108692 76109001 -151415577 - AluY SINE Alu -3 308 1 792 115 23 23 chr3 76109367 76109497 -151415081 - L1PA11 LINE L1 -11 6163 6034 24 32 0 0 chr3 76109523 76109554 -151415024 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr3 76109949 76109978 -151414600 + AT_rich Low_complexity Low_complexity 1 29 0 13332 155 25 16 chr3 76110187 76112577 -151412001 - Tigger1 DNA MER2_type -4 2414 2 8156 66 6 16 chr3 76112577 76113659 -151410919 - MER11C LTR ERVK 0 1071 1 3288 251 74 55 chr3 76114586 76116325 -151408253 + L1M4b LINE L1 47 1888 -5071 2339 83 0 3 chr3 76116325 76116637 -151407941 + AluY SINE Alu 1 311 0 3288 251 74 55 chr3 76116637 76116883 -151407695 + L1M4b LINE L1 1888 2128 -4831 1145 185 65 123 chr3 76116986 76117438 -151407140 - MLT2D LTR ERVL -2 518 39 2162 160 3 21 chr3 76118653 76119040 -151405538 - MLT1B LTR MaLR 0 390 11 277 289 52 69 chr3 76119447 76119620 -151404958 - L2 LINE L2 -424 2890 2721 1533 200 74 67 chr3 76119989 76120402 -151404176 + MLT1C LTR MaLR 34 467 0 189 0 0 0 chr3 76120580 76120601 -151403977 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr3 76120813 76120836 -151403742 + AT_rich Low_complexity Low_complexity 1 23 0 1648 225 58 48 chr3 76120967 76121482 -151403096 + MLT2B1 LTR ERVL 1 520 0 225 196 0 0 chr3 76121526 76121572 -151403006 + (TATG)n Simple_repeat Simple_repeat 3 48 0 26 30 0 0 chr3 76121756 76121789 -151402789 + AT_rich Low_complexity Low_complexity 1 33 0 2346 94 3 0 chr3 76121805 76122114 -151402464 + AluSx SINE Alu 1 310 -2 1533 166 11 60 chr3 76123301 76123489 -151401089 - L1P5 LINE L1 -455 5701 5540 1840 145 48 0 chr3 76123489 76123779 -151400799 - AluSg SINE Alu -6 304 1 1533 166 11 60 chr3 76123779 76123970 -151400608 - L1P5 LINE L1 -616 5540 5341 914 201 11 0 chr3 76123970 76124144 -151400434 + 7SLRNA srpRNA srpRNA 27 202 -118 311 339 0 32 chr3 76124297 76124421 -151400157 + MIR SINE MIR 72 191 -71 24 53 0 0 chr3 76124794 76124832 -151399746 + AT_rich Low_complexity Low_complexity 1 38 0 34 24 0 0 chr3 76124955 76124996 -151399582 + AT_rich Low_complexity Low_complexity 1 41 0 3185 40 5 5 chr3 76125372 76125772 -151398806 + L1PA4 LINE L1 5754 6153 -2 206 32 32 0 chr3 76125862 76125893 -151398685 + (TC)n Simple_repeat Simple_repeat 2 33 0 424 349 20 0 chr3 76126009 76126158 -151398420 - MIR SINE MIR -94 168 17 1309 267 75 71 chr3 76126208 76126722 -151397856 + MLT1E3 LTR MaLR 6 524 -100 2311 98 0 0 chr3 76126722 76127028 -151397550 - AluSg SINE Alu -4 306 1 1309 267 75 71 chr3 76127028 76127130 -151397448 + MLT1E3 LTR MaLR 524 624 0 734 231 52 6 chr3 76127429 76127602 -151396976 - MLT1B LTR MaLR 0 390 210 58 43 0 72 chr3 76127659 76127868 -151396710 + AT_rich Low_complexity Low_complexity 1 194 0 1445 268 59 21 chr3 76127885 76128311 -151396267 - MLT2B1 LTR ERVL -78 442 1 2278 236 31 33 chr3 76128311 76128624 -151395954 - ERVL LTR ERVL 0 5654 5342 279 79 0 0 chr3 76128624 76128662 -151395916 + (TG)n Simple_repeat Simple_repeat 1 38 0 2278 236 31 33 chr3 76128662 76129148 -151395430 - ERVL LTR ERVL -312 5342 4878 1340 194 58 4 chr3 76129125 76129367 -151395211 - ERVL LTR ERVL -2119 3645 3391 * 260 220 0 0 chr3 76129359 76129409 -151395169 + ERVL LTR ERVL 3944 3993 -1771 * 22 0 0 0 chr3 76129787 76129809 -151394769 + AT_rich Low_complexity Low_complexity 1 22 0 350 337 99 6 chr3 76129809 76129990 -151394588 + MIR SINE MIR 47 244 -18 809 214 27 98 chr3 76130187 76130523 -151394055 + L1MD3 LINE L1 7667 7978 -17 21 0 0 0 chr3 76130932 76130953 -151393625 + AT_rich Low_complexity Low_complexity 1 21 0 44 91 0 0 chr3 76132557 76132678 -151391900 + AT_rich Low_complexity Low_complexity 1 121 0 2206 105 3 0 chr3 76133360 76133656 -151390922 + AluSq SINE Alu 1 297 -16 2761 156 13 13 chr3 76133821 76134275 -151390303 + MLT1C LTR MaLR 1 454 -13 2650 225 77 12 chr3 76134357 76135221 -151389357 + L1MB8 LINE L1 5159 6083 -95 7512 33 0 0 chr3 76135245 76136144 -151388434 + L1PA4 LINE L1 5254 6152 -3 4162 152 13 7 chr3 76136444 76137157 -151387421 - L1PA15 LINE L1 0 6165 5449 435 332 10 58 chr3 76137164 76137369 -151387209 - MIR SINE MIR -59 203 9 281 258 11 0 chr3 76137517 76137606 -151386972 + (TA)n Simple_repeat Simple_repeat 2 91 0 239 169 28 28 chr3 76137760 76137831 -151386747 - MER116 DNA Mariner -1 79 9 186 222 36 0 chr3 76137832 76137999 -151386579 + (TA)n Simple_repeat Simple_repeat 2 174 0 315 284 55 23 chr3 76139259 76139475 -151385103 + L1ME LINE L1 5506 5645 -476 2250 103 0 0 chr3 76139554 76139845 -151384733 + AluSx SINE Alu 3 293 -19 22 35 0 0 chr3 76140097 76140126 -151384452 + AT_rich Low_complexity Low_complexity 1 29 0 2266 90 17 0 chr3 76141185 76141486 -151383092 - AluSc SINE Alu -1 308 3 212 0 36 0 chr3 76141887 76141915 -151382663 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 2012 93 0 0 chr3 76141917 76142174 -151382404 - AluSx SINE Alu -55 257 1 192 313 104 0 chr3 76142333 76142400 -151382178 + MIR3 SINE MIR 85 158 -50 22 35 0 0 chr3 76142532 76142561 -151382017 + AT_rich Low_complexity Low_complexity 1 29 0 262 156 0 0 chr3 76142596 76142641 -151381937 - MLT2B2 LTR ERVL 0 515 471 7426 32 2 3 chr3 76142685 76143649 -151380929 + L1PA4 LINE L1 5193 6155 0 2276 90 0 0 chr3 76144112 76144402 -151380176 - AluSg1 SINE Alu -19 290 1 208 269 86 81 chr3 76144937 76145134 -151379444 - MIR SINE MIR -39 223 26 373 372 14 0 chr3 76145427 76145575 -151379003 + MLT1I LTR MaLR 47 196 -213 1285 173 24 4 chr3 76145924 76146173 -151378405 + LTR1 LTR ERV1 11 264 -521 2605 192 51 30 chr3 76146558 76147127 -151377451 + LTR1 LTR ERV1 205 785 0 251 397 60 26 chr3 76147777 76148044 -151376534 + L2 LINE L2 2994 3269 -3 21 36 0 0 chr3 76148350 76148378 -151376200 + AT_rich Low_complexity Low_complexity 1 28 0 40 37 0 0 chr3 76150428 76150482 -151374096 + AT_rich Low_complexity Low_complexity 1 54 0 33 0 0 0 chr3 76150602 76150635 -151373943 + AT_rich Low_complexity Low_complexity 1 33 0 195 42 0 0 chr3 76150995 76151019 -151373559 + (CTA)n Simple_repeat Simple_repeat 2 25 0 26 64 0 0 chr3 76151693 76151740 -151372838 + AT_rich Low_complexity Low_complexity 1 47 0 888 218 33 74 chr3 76151958 76152201 -151372377 + MER52A LTR ERV1 663 895 -860 4781 78 14 2 chr3 76152211 76153078 -151371500 + L1PA7 LINE L1 5042 5915 -239 25 0 0 0 chr3 76153133 76153158 -151371420 + AT_rich Low_complexity Low_complexity 1 25 0 221 222 0 0 chr3 76153264 76153309 -151371269 + (TG)n Simple_repeat Simple_repeat 2 46 0 32 75 0 0 chr3 76153407 76153474 -151371104 + AT_rich Low_complexity Low_complexity 1 67 0 21 36 0 0 chr3 76153587 76153615 -151370963 + AT_rich Low_complexity Low_complexity 1 28 0 1722 160 19 3 chr3 76155356 76155663 -151368915 - AluJb SINE Alu 0 312 1 906 263 65 3 chr3 76156130 76156423 -151368155 + L1MB8 LINE L1 5868 6178 0 348 43 0 0 chr3 76157509 76157555 -151367023 + (TG)n Simple_repeat Simple_repeat 2 47 0 973 219 74 33 chr3 76157860 76158130 -151366448 + LTR9 LTR ERV1 332 612 0 24 0 0 0 chr3 76158348 76158372 -151366206 + AT_rich Low_complexity Low_complexity 1 24 0 285 51 0 0 chr3 76159153 76159192 -151365386 + (TG)n Simple_repeat Simple_repeat 2 40 0 2065 115 4 0 chr3 76159193 76159472 -151365106 - AluSq SINE Alu -33 280 1 290 188 0 43 chr3 76159908 76159977 -151364601 + MLT1H LTR MaLR 132 197 -352 478 358 22 44 chr3 76160767 76161161 -151363417 + L2 LINE L2 2708 3094 -219 24 0 0 0 chr3 76161161 76161185 -151363393 + AT_rich Low_complexity Low_complexity 1 24 0 438 140 73 153 chr3 76161197 76161347 -151363231 - FRAM SINE Alu -26 150 13 843 251 125 20 chr3 76161687 76161990 -151362588 - MLT1F1 LTR MaLR -22 545 211 189 0 0 0 chr3 76162146 76162167 -151362411 + (GA)n Simple_repeat Simple_repeat 2 22 0 366 255 138 21 chr3 76162172 76162317 -151362261 - MLT1F1 LTR MaLR -431 162 1 292 289 67 47 chr3 76162542 76162691 -151361887 - L2 LINE L2 0 3313 3162 25 0 0 0 chr3 76163893 76163918 -151360660 + AT_rich Low_complexity Low_complexity 1 25 0 295 364 49 84 chr3 76164192 76164500 -151360078 + L3 LINE CR1 1278 1574 -3 230 246 15 0 chr3 76164949 76165014 -151359564 + MER116 DNA Mariner 3 68 -12 353 259 134 0 chr3 76165458 76165570 -151359008 - MIR SINE MIR -98 164 38 285 317 94 50 chr3 76165623 76165803 -151358775 + MIR3 SINE MIR 15 202 -6 1407 191 250 15 chr3 76165948 76166340 -151358238 + MLT1D LTR MaLR 1 484 -21 787 357 129 26 chr3 76166377 76167150 -151357428 + L2 LINE L2 2125 2977 -337 1075 58 0 45 chr3 76167423 76167578 -151357000 - L1PA5 LINE L1 0 6154 6007 376 273 119 40 chr3 76167781 76167957 -151356621 + L2 LINE L2 3120 3309 -4 5174 171 37 4 chr3 76168023 76169250 -151355328 + L1PA16 LINE L1 4883 6157 -9 1287 147 34 0 chr3 76169261 76169499 -151355079 + L1MA8 LINE L1 6040 6285 -6 1845 193 30 0 chr3 76170055 76170417 -151354161 + L1PB4 LINE L1 5783 6155 -1 242 250 0 0 chr3 76172358 76172418 -151352160 + CT-rich Low_complexity Low_complexity 1 60 0 21 36 0 0 chr3 76172859 76172887 -151351691 + AT_rich Low_complexity Low_complexity 1 28 0 21 43 0 0 chr3 76173145 76173168 -151351410 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 76173349 76173371 -151351207 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 76173422 76173443 -151351135 + AT_rich Low_complexity Low_complexity 1 21 0 314 277 11 43 chr3 76173691 76173875 -151350703 + (CGGGG)n Simple_repeat Simple_repeat 2 179 0 248 181 8 60 chr3 76173895 76174028 -151350550 + GA-rich Low_complexity Low_complexity 2 127 0 22 0 0 0 chr3 76174724 76174746 -151349832 + AT_rich Low_complexity Low_complexity 1 22 0 35 0 0 0 chr3 76175185 76175220 -151349358 + AT_rich Low_complexity Low_complexity 1 35 0 47 33 0 0 chr3 76175377 76175438 -151349140 + AT_rich Low_complexity Low_complexity 1 61 0 520 271 15 8 chr3 76175891 76176024 -151348554 + L1MA4A LINE L1 819 952 -5897 10455 217 80 12 chr3 76176070 76180509 -151344069 + L1MA4A LINE L1 2259 6994 -11 423 232 40 25 chr3 76180884 76181007 -151343571 + MLT1E LTR MaLR 1 128 -465 24 32 0 0 chr3 76181376 76181407 -151343171 + AT_rich Low_complexity Low_complexity 1 31 0 256 254 15 0 chr3 76182724 76182791 -151341787 + L1MCc LINE L1 21 88 -6335 464 314 38 31 chr3 76182798 76183091 -151341487 + L1MCc LINE L1 161 455 -5968 428 289 12 83 chr3 76183385 76183638 -151340940 + L1MCc LINE L1 868 1102 -5321 630 214 89 6 chr3 76183744 76184032 -151340546 + L1MC/D LINE L1 5162 5471 -827 1303 160 3 72 chr3 76184414 76184707 -151339871 - L1PA16 LINE L1 -1 6165 5893 1888 134 0 31 chr3 76186396 76186717 -151337861 + AluSx SINE Alu 1 311 -1 192 77 0 0 chr3 76186822 76186848 -151337730 + (TGAA)n Simple_repeat Simple_repeat 3 28 0 1026 78 0 0 chr3 76187355 76187483 -151337095 + AluSx SINE Alu 1 128 -184 1268 110 0 16 chr3 76187536 76187718 -151336860 + AluSx SINE Alu 121 299 -13 617 231 0 0 chr3 76187915 76188049 -151336529 + L1PB4 LINE L1 6020 6153 -3 21 0 0 0 chr3 76188049 76188070 -151336508 + AT_rich Low_complexity Low_complexity 1 21 0 218 234 156 39 chr3 76188070 76188147 -151336431 + MIR SINE MIR 66 151 -111 1354 133 180 34 chr3 76188673 76188967 -151335611 + MER1B DNA MER1_type 1 337 0 21 0 0 0 chr3 76189476 76189497 -151335081 + AT_rich Low_complexity Low_complexity 1 21 0 429 233 54 16 chr3 76189681 76189810 -151334768 - L1M4 LINE L1 -3558 2588 2455 541 186 0 26 chr3 76189838 76189951 -151334627 - MLT1A1 LTR MaLR 0 365 256 384 278 48 11 chr3 76189951 76190138 -151334440 - L1M4 LINE L1 -3279 2867 2674 583 314 0 6 chr3 76190151 76190310 -151334268 - MLT1A2 LTR MaLR -31 343 186 237 241 0 0 chr3 76190328 76190382 -151334196 - MLT1A2 LTR MaLR -308 57 4 2136 205 12 2 chr3 76190385 76190800 -151333778 - MLT1A2-int LTR MaLR 0 1735 1317 604 160 9 9 chr3 76190896 76191002 -151333576 - MLT1A1 LTR MaLR -256 109 4 6537 70 15 1 chr3 76191195 76192268 -151332310 + L1PA7 LINE L1 5061 6154 0 198 91 0 0 chr3 76192919 76192952 -151331626 + (TG)n Simple_repeat Simple_repeat 2 34 0 618 229 39 7 chr3 76193368 76193521 -151331057 - L1ME1 LINE L1 -10 6156 5999 849 236 38 42 chr3 76193575 76193838 -151330740 - L1ME1 LINE L1 -327 5839 5578 383 232 0 0 chr3 76193839 76193921 -151330657 - L1ME1 LINE L1 -1164 4982 4901 1731 222 143 13 chr3 76193947 76194416 -151330162 - MER34 LTR ERV1 -12 530 1 553 284 75 21 chr3 76194418 76194657 -151329921 - L1ME1 LINE L1 -1250 4896 4645 29 47 0 0 chr3 76194659 76194702 -151329876 + AT_rich Low_complexity Low_complexity 1 43 0 200 208 73 0 chr3 76194705 76194801 -151329777 + (TA)n Simple_repeat Simple_repeat 2 104 0 286 310 17 26 chr3 76195171 76195287 -151329291 - MER90 LTR ERV1 -394 181 67 24 77 0 0 chr3 76195731 76195783 -151328795 + AT_rich Low_complexity Low_complexity 1 52 0 443 351 101 37 chr3 76197325 76198006 -151326572 + MERVL LTR ERVL 2427 3151 -2334 569 367 84 23 chr3 76198108 76198882 -151325696 + MERVL LTR ERVL 3555 4375 -1279 26296 42 27 1 chr3 76199528 76202960 -151321618 + L1P LINE L1 8 3564 -2582 180 333 81 18 chr3 76203686 76203797 -151320781 - L2 LINE L2 0 3272 3155 26 0 0 0 chr3 76204466 76204492 -151320086 + AT_rich Low_complexity Low_complexity 1 26 0 694 323 132 12 chr3 76205802 76206288 -151318290 - MLT1H1 LTR MaLR 0 555 12 372 77 0 0 chr3 76207306 76207358 -151317220 + (CA)n Simple_repeat Simple_repeat 2 53 0 2141 184 5 5 chr3 76207358 76207727 -151316851 + THE1C LTR MaLR 7 375 0 25 51 0 0 chr3 76208507 76208546 -151316032 + AT_rich Low_complexity Low_complexity 1 39 0 200 200 0 0 chr3 76208799 76208834 -151315744 + CT-rich Low_complexity Low_complexity 4 38 0 2202 161 0 29 chr3 76209413 76209799 -151314779 + THE1C LTR MaLR 1 375 0 9081 127 45 45 chr3 76209799 76211380 -151313198 + THE1C-int LTR MaLR 1 1580 0 1109 137 31 3 chr3 76211380 76211653 -151312925 + THE1C LTR MaLR 1 375 0 2345 132 14 14 chr3 76212434 76212797 -151311781 + THE1B LTR MaLR 1 363 -1 541 274 91 14 chr3 76213194 76213413 -151311165 + LTR50 LTR ERVL 1 236 -559 8463 142 22 114 chr3 76213446 76215114 -151309464 - Tigger1 DNA MER2_type -4 2414 965 3732 106 87 2 chr3 76215114 76215699 -151308879 - MER41B LTR ERV1 0 635 1 8463 142 22 114 chr3 76215699 76216059 -151308519 - Tigger1 DNA MER2_type -1453 965 573 1946 146 116 30 chr3 76216065 76216470 -151308108 + LTR4 LTR ERV1 1 440 -156 235 247 0 31 chr3 76216598 76216695 -151307883 + G-rich Low_complexity Low_complexity 4 97 0 279 379 0 16 chr3 76216750 76216932 -151307646 + G-rich Low_complexity Low_complexity 1 179 0 24 32 0 0 chr3 76218565 76218596 -151305982 + AT_rich Low_complexity Low_complexity 1 31 0 189 304 70 26 chr3 76218744 76218859 -151305719 + MIR SINE MIR 47 166 -96 1794 184 7 0 chr3 76218948 76219253 -151305325 + AluSx SINE Alu 2 308 -4 2421 279 54 26 chr3 76219270 76220267 -151304311 + L1MEc LINE L1 136 1160 -5236 515 229 18 18 chr3 76220301 76220467 -151304111 + L1M4 LINE L1 3629 3794 -2352 1255 243 74 89 chr3 76220474 76220878 -151303700 + L1M4 LINE L1 4263 4671 -1475 1841 139 36 20 chr3 76220878 76221179 -151303399 - AluSx SINE Alu -6 306 1 1255 243 74 89 chr3 76221179 76221892 -151302686 + L1M4 LINE L1 4671 5364 -782 275 182 0 0 chr3 76221898 76221942 -151302636 - MER2 DNA MER2_type -17 328 285 2832 234 17 7 chr3 76221983 76222560 -151302018 + L1P4 LINE L1 1 583 -6204 * 3008 217 11 30 chr3 76222544 76223207 -151301371 + L1P4 LINE L1 1264 1913 -4874 8485 188 15 5 chr3 76223211 76225406 -151299172 + L1P4 LINE L1 4217 6430 -386 12739 21 1 0 chr3 76225506 76227757 -151296821 + L1PA2 LINE L1 3901 6152 -3 1092 239 53 113 chr3 76227936 76228442 -151296136 - MLT1F1 LTR MaLR 0 567 92 225 0 0 0 chr3 76229621 76229646 -151294932 + (A)n Simple_repeat Simple_repeat 1 25 0 1716 141 4 0 chr3 76229873 76230128 -151294450 - AluSq SINE Alu -18 295 40 1621 219 18 86 chr3 76230378 76230949 -151293629 - LTR55 LTR ERV -16 532 1 512 355 26 0 chr3 76231799 76232027 -151292551 + ERVL LTR ERVL 3227 3460 -2304 2618 109 3 5 chr3 76232290 76232666 -151291912 + THE1C LTR MaLR 1 375 0 346 328 29 25 chr3 76232717 76232921 -151291657 + ERVL LTR ERVL 3792 3996 -1658 425 350 37 25 chr3 76232956 76233199 -151291379 + ERVL LTR ERVL 4110 4355 -1409 751 316 62 48 chr3 76233238 76233798 -151290780 + ERVL LTR ERVL 4458 5025 -739 1139 270 20 9 chr3 76233988 76234332 -151290246 + L1MC4a LINE L1 7101 7448 -360 654 149 9 0 chr3 76234403 76234517 -151290061 - L1MA3 LINE L1 -2 6303 6189 24 0 0 0 chr3 76235306 76235330 -151289248 + AT_rich Low_complexity Low_complexity 1 24 0 1948 111 0 8 chr3 76235344 76235633 -151288945 - AluSq SINE Alu 0 313 27 1773 195 77 8 chr3 76235633 76236012 -151288566 - MLT2C2 LTR ERVL -59 405 1 1473 194 97 9 chr3 76236156 76236475 -151288103 - MSTB LTR MaLR 0 426 80 1789 175 72 57 chr3 76236476 76236865 -151287713 + MSTA LTR MaLR 1 398 -30 2171 100 14 0 chr3 76236865 76237156 -151287422 - AluSc SINE Alu -14 295 1 1789 175 72 57 chr3 76237156 76237184 -151287394 + MSTA LTR MaLR 398 424 -4 413 160 67 0 chr3 76237185 76237260 -151287318 - MSTB LTR MaLR -346 80 1 1442 234 0 0 chr3 76238610 76238999 -151285579 + L1HS LINE L1 5767 6155 0 29 70 0 0 chr3 76239430 76239487 -151285091 + AT_rich Low_complexity Low_complexity 1 57 0 23 78 0 0 chr3 76239616 76239667 -151284911 + AT_rich Low_complexity Low_complexity 1 51 0 9185 191 34 59 chr3 76240105 76241826 -151282752 + L1MA3 LINE L1 3158 4920 -2804 1161 105 0 23 chr3 76241826 76241997 -151282581 - L1PA3 LINE L1 0 6155 5989 9185 191 34 59 chr3 76241997 76243304 -151281274 + L1MA3 LINE L1 4920 6258 -1466 180 0 0 0 chr3 76243304 76243324 -151281254 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 9185 191 34 59 chr3 76243324 76245184 -151279394 + L1MA3 LINE L1 6258 7724 0 23 68 0 0 chr3 76245184 76245228 -151279350 + AT_rich Low_complexity Low_complexity 1 44 0 207 0 0 0 chr3 76245767 76245790 -151278788 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 13764 40 1 9 chr3 76246277 76246652 -151277926 - L1P LINE L1 -927 5219 4842 2784 19 0 0 chr3 76246652 76246962 -151277616 + AluYb8 SINE Alu 1 310 -8 13764 40 1 9 chr3 76246962 76248294 -151276284 - L1P LINE L1 -1304 4842 3526 6944 33 0 0 chr3 76248294 76249111 -151275467 + L1PA5 LINE L1 5337 6154 0 210 353 133 40 chr3 76249611 76250016 -151274562 + L2 LINE L2 2364 2806 -508 284 230 14 14 chr3 76250023 76250097 -151274481 - L1PA12 LINE L1 -7475 106 33 6310 174 19 23 chr3 76250100 76250541 -151274037 + L1PA15 LINE L1 4060 4501 -1630 2130 117 7 0 chr3 76250541 76250840 -151273738 + AluSq SINE Alu 1 301 -12 6310 174 19 23 chr3 76250840 76250914 -151273664 + L1PA15 LINE L1 4501 4574 -1557 7486 191 115 23 chr3 76250914 76252521 -151272057 + MER52A LTR ERV1 1 1755 0 6310 174 19 23 chr3 76252521 76254127 -151270451 + L1PA15 LINE L1 4574 6131 0 22 0 0 0 chr3 76254547 76254569 -151270009 + AT_rich Low_complexity Low_complexity 1 22 0 242 336 80 42 chr3 76254694 76255096 -151269482 + HAL1 LINE L1 1237 1653 -854 21 0 0 0 chr3 76255320 76255341 -151269237 + AT_rich Low_complexity Low_complexity 1 21 0 203 114 0 45 chr3 76255347 76255391 -151269187 + (CTAAA)n Simple_repeat Simple_repeat 2 43 0 27 29 0 0 chr3 76255523 76255557 -151269021 + AT_rich Low_complexity Low_complexity 1 34 0 8054 8 0 0 chr3 76255791 76257068 -151267510 - L1HS LINE L1 0 6155 4879 23 0 0 0 chr3 76257687 76257710 -151266868 + AT_rich Low_complexity Low_complexity 1 23 0 219 310 14 56 chr3 76257886 76257957 -151266621 - MIR SINE MIR -107 101 34 1612 175 41 10 chr3 76257966 76258257 -151266321 - AluSx SINE Alu -12 300 1 21 57 0 0 chr3 76258553 76258588 -151265990 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr3 76258643 76258668 -151265910 + AT_rich Low_complexity Low_complexity 1 25 0 1886 146 80 15 chr3 76258761 76259151 -151265427 + L1MA8 LINE L1 5869 6283 -8 2180 267 33 19 chr3 76259597 76260256 -151264322 + L1MB8 LINE L1 4637 5310 -836 2373 65 0 7 chr3 76260256 76260564 -151264014 + AluY SINE Alu 1 306 -5 2180 267 33 19 chr3 76260564 76260658 -151263920 + L1MB8 LINE L1 5310 5401 -745 1446 204 51 12 chr3 76260656 76260989 -151263589 + L1MB8 LINE L1 5833 6178 0 * 387 244 41 8 chr3 76261079 76261202 -151263376 + MLT1C LTR MaLR 1 127 -340 419 321 31 52 chr3 76261203 76261493 -151263085 + MERVL LTR ERVL 3335 3618 -1378 323 222 248 17 chr3 76261513 76261558 -151263020 - MLT2B3 LTR ERVL 0 554 521 342 67 0 0 chr3 76261558 76261603 -151262975 + (TG)n Simple_repeat Simple_repeat 2 46 0 323 222 248 17 chr3 76261603 76261674 -151262904 - MLT2B3 LTR ERVL -33 521 411 746 211 79 32 chr3 76261722 76261912 -151262666 - MLT2B3 LTR ERVL -355 199 1 900 328 74 28 chr3 76262101 76262859 -151261719 + MERVL LTR ERVL 4114 4954 -597 2418 69 3 0 chr3 76263079 76263385 -151261193 + AluY SINE Alu 3 309 -2 717 299 55 44 chr3 76263694 76264153 -151260425 + LTR16B LTR ERVL 1 464 0 1822 264 112 25 chr3 76264430 76265341 -151259237 - L1M4 LINE L1 -2415 4229 3240 34 79 0 0 chr3 76265855 76265931 -151258647 + AT_rich Low_complexity Low_complexity 1 76 0 759 301 58 14 chr3 76265931 76266093 -151258485 - L1M4 LINE L1 -3925 2900 2746 894 28 0 126 chr3 76266093 76266236 -151258342 - L1PA13 LINE L1 -19 6144 6020 759 301 58 14 chr3 76266236 76266489 -151258089 - L1M4 LINE L1 -4079 2746 2467 300 262 140 12 chr3 76266506 76266670 -151257908 - L1M4 LINE L1 -4482 2343 2159 1696 179 0 0 chr3 76266738 76267017 -151257561 - AluJb SINE Alu -24 288 10 310 286 90 8 chr3 76267023 76267301 -151257277 - L1M4 LINE L1 -4832 1710 1538 415 299 13 7 chr3 76267322 76267476 -151257102 - L1MB7 LINE L1 -17 6167 6013 24 0 0 0 chr3 76267800 76267824 -151256754 + AT_rich Low_complexity Low_complexity 1 24 0 257 253 33 11 chr3 76268458 76268549 -151256029 + (TA)n Simple_repeat Simple_repeat 1 93 0 2310 110 0 31 chr3 76269161 76269543 -151255035 - L1M1 LINE L1 -4525 3040 2671 2172 165 19 0 chr3 76269545 76269914 -151254664 - L1M1 LINE L1 -5795 1770 1395 * 2961 189 18 12 chr3 76269906 76270471 -151254107 - L1M1 LINE L1 -6986 579 12 24 0 0 0 chr3 76271415 76271439 -151253139 + AT_rich Low_complexity Low_complexity 1 24 0 196 340 68 19 chr3 76271674 76271777 -151252801 + MER5A DNA MER1_type 57 164 -25 318 26 0 0 chr3 76272383 76272422 -151252156 + (CA)n Simple_repeat Simple_repeat 2 40 0 309 297 97 29 chr3 76272446 76272621 -151251957 - MIR SINE MIR -2 260 74 316 273 34 0 chr3 76272641 76272729 -151251849 + L1MC4 LINE L1 6613 6703 -1339 1717 170 47 8 chr3 76272737 76273101 -151251477 + L1MB1 LINE L1 5787 6164 -4 2034 169 13 97 chr3 76273112 76273669 -151250909 + L1MC2 LINE L1 5825 6334 -10 23 0 0 0 chr3 76276366 76276389 -151248189 + AT_rich Low_complexity Low_complexity 1 23 0 200 250 0 0 chr3 76277339 76277379 -151247199 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 1785 127 4 0 chr3 76277442 76277702 -151246876 - AluSg SINE Alu -12 298 38 1767 157 24 47 chr3 76278170 76278552 -151246026 - THE1C LTR MaLR -2 373 1 28 61 0 0 chr3 76279101 76279150 -151245428 + AT_rich Low_complexity Low_complexity 1 49 0 301 279 68 32 chr3 76279235 76279454 -151245124 - L1MC5 LINE L1 -408 7553 7327 1647 194 12 24 chr3 76279736 76280066 -151244512 + L1MA8 LINE L1 468 793 -6696 276 233 17 0 chr3 76280084 76280144 -151244434 + L1MA8 LINE L1 781 841 -6648 991 220 84 60 chr3 76280152 76280737 -151243841 + L1MA8 LINE L1 3088 3694 -3871 354 150 80 5 chr3 76280733 76280842 -151243736 + L1MA8 LINE L1 6140 6260 -31 * 332 70 0 0 chr3 76280900 76280943 -151243635 - L1MA8 LINE L1 -1991 5574 5532 4695 187 38 26 chr3 76280960 76283018 -151241560 + L1MA8 LINE L1 5567 7645 -65 4467 149 61 10 chr3 76283020 76283845 -151240733 - Tigger3(Golem) DNA MER2_type 0 3029 2163 235 193 53 0 chr3 76283897 76283954 -151240624 + L1MA8 LINE L1 7645 7704 -6 459 294 41 5 chr3 76283961 76284179 -151240399 - L1M4 LINE L1 -1572 4574 4349 362 275 141 7 chr3 76284228 76284377 -151240201 - L1M4 LINE L1 -1954 4192 4024 486 256 29 103 chr3 76284437 76284788 -151239790 - L1MC5 LINE L1 -785 7176 6852 270 202 21 11 chr3 76284801 76284895 -151239683 + (TA)n Simple_repeat Simple_repeat 1 95 0 701 140 96 25 chr3 76284913 76285070 -151239508 + L1MA8 LINE L1 6055 6222 -69 457 288 9 52 chr3 76285082 76285294 -151239284 - L1MC5 LINE L1 -1127 6834 6632 559 244 122 13 chr3 76285353 76285509 -151239069 - MLT1D LTR MaLR -49 456 284 957 152 318 25 chr3 76285510 76285787 -151238791 - L1MCa LINE L1 -4582 1844 1487 814 354 117 17 chr3 76285932 76286522 -151238056 - L2 LINE L2 -2631 683 35 191 286 36 0 chr3 76286590 76286646 -151237932 - MIR SINE MIR -108 100 43 25 51 0 0 chr3 76286843 76286882 -151237696 + AT_rich Low_complexity Low_complexity 1 39 0 29 47 0 0 chr3 76287183 76287226 -151237352 + AT_rich Low_complexity Low_complexity 1 43 0 426 288 26 39 chr3 76287242 76287395 -151237183 + MLT1E3 LTR MaLR 1 151 -503 546 270 31 13 chr3 76287455 76287614 -151236964 + MLT1E3 LTR MaLR 225 386 -238 698 147 0 0 chr3 76287717 76287826 -151236752 - L1PA15 LINE L1 -101 6064 5956 651 360 80 22 chr3 76288092 76288683 -151235895 - L2 LINE L2 -1 3312 2689 1926 159 3 0 chr3 76288977 76289278 -151235300 - AluSx SINE Alu -8 304 3 24 0 0 0 chr3 76289506 76289530 -151235048 + AT_rich Low_complexity Low_complexity 1 24 0 345 301 59 7 chr3 76289977 76290113 -151234465 + MIR SINE MIR 41 183 -79 186 208 0 0 chr3 76290123 76290171 -151234407 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 7724 23 0 0 chr3 76290235 76291305 -151233273 - L1PA3 LINE L1 0 6155 5086 22 35 0 0 chr3 76291416 76291445 -151233133 + AT_rich Low_complexity Low_complexity 1 29 0 213 383 14 7 chr3 76292434 76292575 -151232003 - MIR SINE MIR 0 262 121 961 285 81 94 chr3 76292645 76292758 -151231820 + MERVL LTR ERVL 1621 1734 -3262 1010 306 42 24 chr3 76292758 76293212 -151231366 - LTR40b LTR ERVL 0 462 1 961 285 81 94 chr3 76293212 76293769 -151230809 + MERVL LTR ERVL 1734 2282 -2714 727 312 55 28 chr3 76293788 76294150 -151230428 + MERVL LTR ERVL 2373 2744 -2252 5181 102 29 79 chr3 76294186 76294825 -151229753 - MER4D LTR ERV1 -5 867 197 2501 40 0 13 chr3 76294825 76295126 -151229452 - AluY SINE Alu -14 297 1 408 63 63 32 chr3 76295126 76295183 -151229395 - AluY SINE Alu -179 132 74 5181 102 29 79 chr3 76295183 76295395 -151229183 - MER4D LTR ERV1 -673 199 5 280 222 65 93 chr3 76295494 76295602 -151228976 - MER41E LTR ERV1 -52 460 356 1164 224 28 4 chr3 76295609 76295864 -151228714 - LTR43 LTR ERV1 -166 436 176 383 342 50 13 chr3 76296211 76296497 -151228081 + MERVL LTR ERVL 2970 3267 -1908 2026 124 13 10 chr3 76296537 76296835 -151227743 + AluSq SINE Alu 3 301 -12 1436 241 53 43 chr3 76296839 76297437 -151227141 + L1M4 LINE L1 3958 4561 -1585 21 0 0 0 chr3 76298020 76298041 -151226537 + AT_rich Low_complexity Low_complexity 1 21 0 2216 76 7 33 chr3 76298044 76298347 -151226231 - AluY SINE Alu -16 295 1 21 0 0 0 chr3 76299283 76299304 -151225274 + AT_rich Low_complexity Low_complexity 1 21 0 735 180 31 5 chr3 76299356 76299550 -151225028 + L1PB1 LINE L1 3037 3235 -2911 2156 148 9 6 chr3 76299561 76299899 -151224679 + LTR3b LTR ERVK 158 496 -4 269 146 0 0 chr3 76299900 76299941 -151224637 + LTR3b LTR ERVK 460 500 0 8971 191 19 8 chr3 76299941 76301109 -151223469 + L1PB1 LINE L1 3230 4384 -1767 380 71 18 0 chr3 76301109 76301165 -151223413 + (TA)n Simple_repeat Simple_repeat 1 57 0 8971 191 19 8 chr3 76301165 76302886 -151221692 + L1PB1 LINE L1 4384 6151 0 2046 145 0 0 chr3 76302940 76303250 -151221328 + AluSg SINE Alu 1 310 0 192 40 0 0 chr3 76303367 76303392 -151221186 + (TG)n Simple_repeat Simple_repeat 2 26 0 1658 50 5 27 chr3 76303843 76304065 -151220513 + L1PA7 LINE L1 5913 6129 -25 207 0 0 0 chr3 76304065 76304088 -151220490 + (TA)n Simple_repeat Simple_repeat 2 24 0 22 56 0 0 chr3 76304419 76304455 -151220123 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr3 76304829 76304863 -151219715 + AT_rich Low_complexity Low_complexity 1 34 0 2240 126 42 6 chr3 76305717 76306075 -151218503 - THE1C LTR MaLR -4 371 1 222 246 0 31 chr3 76306485 76306550 -151218028 + (CATATA)n Simple_repeat Simple_repeat 6 68 0 975 72 0 7 chr3 76306698 76306837 -151217741 - L1MA3 LINE L1 -2 6303 6166 23 0 0 0 chr3 76307455 76307478 -151217100 + AT_rich Low_complexity Low_complexity 1 23 0 444 320 79 32 chr3 76307657 76307935 -151216643 + L2 LINE L2 3023 3313 0 297 0 0 0 chr3 76309379 76309412 -151215166 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr3 76309733 76309754 -151214824 + AT_rich Low_complexity Low_complexity 1 21 0 1888 153 10 3 chr3 76311154 76311455 -151213123 + AluSx SINE Alu 3 305 -7 25 51 0 0 chr3 76312332 76312371 -151212207 + AT_rich Low_complexity Low_complexity 1 39 0 30332 118 11 58 chr3 76312459 76314368 -151210210 - L1PA7 LINE L1 -3 6151 4154 2027 143 7 0 chr3 76314368 76314675 -151209903 - AluSp SINE Alu -2 311 3 30332 118 11 58 chr3 76314675 76319218 -151205360 - L1PA7 LINE L1 -2000 4154 14 570 208 0 0 chr3 76319667 76319763 -151204815 + Tigger3b DNA MER2_type 7 102 -1129 * 2294 138 50 9 chr3 76319761 76320204 -151204374 + Tigger3b DNA MER2_type 274 734 -497 1831 135 44 50 chr3 76320206 76320547 -151204031 + Tigger3b DNA MER2_type 894 1232 0 27 29 0 0 chr3 76320565 76320599 -151203979 + AT_rich Low_complexity Low_complexity 1 34 0 277 380 20 27 chr3 76320755 76320905 -151203673 + MER5A DNA MER1_type 18 166 -23 4175 205 24 33 chr3 76321340 76321828 -151202750 - L1PB4 LINE L1 0 6156 5665 2311 139 19 6 chr3 76321828 76322187 -151202391 + THE1B LTR MaLR 1 364 0 9846 126 28 27 chr3 76322187 76323765 -151200813 + THE1B-int LTR MaLR 1 1580 0 2238 135 25 8 chr3 76323765 76324121 -151200457 + THE1B LTR MaLR 1 362 -2 4175 205 24 33 chr3 76324121 76325250 -151199328 - L1PB4 LINE L1 -488 5668 4558 2592 193 25 16 chr3 76325260 76325482 -151199096 + L1 LINE L1 3566 3784 -2362 2083 99 0 14 chr3 76325482 76325805 -151198773 + AluSc SINE Alu 1 319 0 2592 193 25 16 chr3 76325805 76326130 -151198448 + L1 LINE L1 3784 4119 -2027 599 263 114 4 chr3 76326327 76326555 -151198023 + LTR33 LTR ERVL 261 513 -8 297 278 66 13 chr3 76326794 76326945 -151197633 + L1M4 LINE L1 2504 2662 -3484 415 309 26 26 chr3 76327790 76327984 -151196594 - LTR16B LTR ERVL -165 299 106 26 50 0 0 chr3 76329225 76329265 -151195313 + AT_rich Low_complexity Low_complexity 1 40 0 23 54 0 0 chr3 76329350 76329387 -151195191 + AT_rich Low_complexity Low_complexity 1 37 0 300 335 58 40 chr3 76329955 76329998 -151194580 + HAL1 LINE L1 142 183 -2324 2233 216 43 53 chr3 76329998 76330581 -151193997 + MER70B LTR ERVL 2 578 0 300 335 58 40 chr3 76330581 76330815 -151193763 + HAL1 LINE L1 183 424 -2083 388 253 136 30 chr3 76332177 76332375 -151192203 + L2 LINE L2 3095 3313 0 344 117 56 50 chr3 76332789 76332968 -151191610 + (TA)n Simple_repeat Simple_repeat 1 180 0 464 123 47 29 chr3 76332982 76333152 -151191426 + (TA)n Simple_repeat Simple_repeat 1 173 0 188 227 23 0 chr3 76333378 76333422 -151191156 - MIR SINE MIR 0 262 218 194 233 0 0 chr3 76333456 76333499 -151191079 - MIR SINE MIR -116 146 104 1593 207 10 3 chr3 76334551 76334856 -151189722 + AluJb SINE Alu 1 307 -5 7950 155 32 29 chr3 76334860 76336482 -151188096 + L1MA1 LINE L1 3764 5410 -892 2253 98 0 13 chr3 76336482 76336798 -151187780 + AluSx SINE Alu 1 312 0 7950 155 32 29 chr3 76336798 76337311 -151187267 + L1MA1 LINE L1 5410 5920 -382 520 92 13 0 chr3 76337304 76337380 -151187198 + L1MA1 LINE L1 6204 6280 -22 * 21 0 0 0 chr3 76337394 76337415 -151187163 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 76337513 76337536 -151187042 + AT_rich Low_complexity Low_complexity 1 23 0 246 266 0 0 chr3 76338153 76338217 -151186361 + CT-rich Low_complexity Low_complexity 1 64 0 21 36 0 0 chr3 76338654 76338682 -151185896 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 76338941 76338965 -151185613 + AT_rich Low_complexity Low_complexity 1 24 0 251 219 10 31 chr3 76339149 76339245 -151185333 + (TATAA)n Simple_repeat Simple_repeat 4 97 0 240 122 0 0 chr3 76339815 76339856 -151184722 + (GA)n Simple_repeat Simple_repeat 1 41 0 23 0 0 0 chr3 76340069 76340092 -151184486 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr3 76340222 76340247 -151184331 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr3 76340858 76340886 -151183692 + AT_rich Low_complexity Low_complexity 1 28 0 34 55 0 0 chr3 76341050 76341105 -151183473 + AT_rich Low_complexity Low_complexity 1 55 0 2381 92 0 0 chr3 76343855 76344161 -151180417 - AluSx SINE Alu -6 306 1 26 30 0 0 chr3 76344177 76344210 -151180368 + AT_rich Low_complexity Low_complexity 1 33 0 2517 39 0 7 chr3 76344232 76344542 -151180036 + L1PA4 LINE L1 5845 6152 -3 778 280 47 0 chr3 76345145 76345359 -151179219 + MER58A DNA MER1_type 1 224 0 1882 188 84 27 chr3 76345493 76345971 -151178607 + MLT1D LTR MaLR 1 505 0 297 277 92 28 chr3 76346292 76346433 -151178145 + L2 LINE L2 3164 3313 0 30 0 0 0 chr3 76346584 76346614 -151177964 + AT_rich Low_complexity Low_complexity 1 30 0 188 341 12 12 chr3 76346748 76346830 -151177748 - MER5A DNA MER1_type -72 117 36 243 190 0 0 chr3 76347308 76347366 -151177212 + (CA)n Simple_repeat Simple_repeat 1 58 0 1336 192 133 16 chr3 76347729 76348052 -151176526 - MER46B DNA MER2_type 0 236 1 1192 255 43 9 chr3 76348065 76348414 -151176164 + MLT1A1 LTR MaLR 3 363 -2 207 194 48 0 chr3 76348649 76348711 -151175867 + (TA)n Simple_repeat Simple_repeat 2 66 0 2443 65 0 0 chr3 76348804 76349110 -151175468 - AluY SINE Alu -5 306 1 2155 98 10 3 chr3 76349147 76349442 -151175136 - AluSq SINE Alu -16 297 1 181 296 122 35 chr3 76352525 76352640 -151171938 + L2 LINE L2 3175 3299 -14 288 349 37 18 chr3 76352729 76352838 -151171740 + MIR3 SINE MIR 54 164 -44 337 323 21 48 chr3 76352844 76353033 -151171545 - MIR SINE MIR -18 244 61 417 302 84 23 chr3 76355167 76355382 -151169196 + MIR SINE MIR 20 247 -15 229 242 32 0 chr3 76355700 76355795 -151168783 + CT-rich Low_complexity Low_complexity 3 100 0 29 47 0 0 chr3 76356722 76356765 -151167813 + AT_rich Low_complexity Low_complexity 1 43 0 217 234 16 0 chr3 76357988 76358052 -151166526 + (CA)n Simple_repeat Simple_repeat 1 65 0 2406 85 7 0 chr3 76358083 76358388 -151166190 - AluSx SINE Alu -5 307 1 278 336 28 49 chr3 76358390 76358533 -151166045 - MIR SINE MIR -109 153 14 25 0 0 0 chr3 76358567 76358592 -151165986 + AT_rich Low_complexity Low_complexity 1 25 0 2310 122 25 5 chr3 76358789 76359157 -151165421 - THE1C LTR MaLR 0 375 1 9071 141 48 3 chr3 76359161 76360670 -151163908 - THE1C-int LTR MaLR -4 1576 1 2284 149 16 3 chr3 76360670 76361040 -151163538 - THE1C LTR MaLR 0 375 1 227 261 15 0 chr3 76361057 76361122 -151163456 - MER103 DNA DNA -52 114 49 454 282 130 46 chr3 76361781 76362065 -151162513 - MLT1I LTR MaLR 0 409 102 22 70 0 0 chr3 76362515 76362558 -151162020 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr3 76363213 76363241 -151161337 + AT_rich Low_complexity Low_complexity 1 28 0 1131 195 5 0 chr3 76363358 76363568 -151161010 - MER2 DNA MER2_type -134 211 1 302 196 33 65 chr3 76363870 76363962 -151160616 + L1MC4 LINE L1 6615 6703 -1339 307 267 11 11 chr3 76363982 76364072 -151160506 - L1MC4 LINE L1 -1339 6703 6614 227 130 0 22 chr3 76364081 76364127 -151160451 + (TA)n Simple_repeat Simple_repeat 2 46 0 2375 101 14 0 chr3 76366191 76366536 -151158042 - L1PB1 LINE L1 -17 6134 5785 291 215 0 0 chr3 76366553 76366618 -151157960 + (TATG)n Simple_repeat Simple_repeat 3 67 0 2854 113 2 5 chr3 76366618 76367051 -151157527 - L1PB1 LINE L1 -360 5791 5360 2221 222 29 0 chr3 76367704 76368182 -151156396 - L1MD1 LINE L1 -46 6196 5705 1681 232 111 20 chr3 76368234 76368873 -151155705 - L1MDa LINE L1 -4166 2374 1678 1933 153 123 8 chr3 76368873 76369239 -151155339 - MSTA LTR MaLR 0 428 21 262 256 47 110 chr3 76369239 76369368 -151155210 - L1MDa LINE L1 -4853 1687 1579 2383 36 0 0 chr3 76369368 76369681 -151154897 - AluY SINE Alu 0 313 1 262 256 47 110 chr3 76369681 76369804 -151154774 - L1MDa LINE L1 -4961 1579 1450 213 39 0 0 chr3 76369804 76369830 -151154748 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 1645 212 120 58 chr3 76369830 76370453 -151154125 - L1MDa LINE L1 -5051 1492 831 214 321 48 12 chr3 76370843 76370927 -151153651 - L2 LINE L2 -1521 1793 1707 373 313 64 52 chr3 76371950 76372183 -151152395 + MLT1E3 LTR MaLR 140 375 -249 584 74 95 0 chr3 76372183 76372200 -151152378 + THE1A-int LTR MaLR 1477 1491 -89 216 0 0 0 chr3 76372200 76372224 -151152354 + (TTAG)n Simple_repeat Simple_repeat 1 24 0 584 74 95 0 chr3 76372224 76372301 -151152277 + THE1A-int LTR MaLR 1491 1580 0 899 53 0 9 chr3 76372301 76372414 -151152164 + THE1A LTR MaLR 1 112 -243 311 296 79 15 chr3 76372416 76372633 -151151945 + MLT1E3 LTR MaLR 334 589 -4 2488 110 3 3 chr3 76373585 76373940 -151150638 - THE1A LTR MaLR 0 355 1 11200 104 11 1 chr3 76373940 76375504 -151149074 - THE1A-int LTR MaLR 0 1580 1 2526 89 20 0 chr3 76375504 76375852 -151148726 - THE1A LTR MaLR 0 355 1 974 292 62 43 chr3 76376541 76377072 -151147506 + MLT1F LTR MaLR 2 542 0 337 277 114 50 chr3 76378201 76378421 -151146157 - MLT1G LTR MaLR -5 537 304 1751 221 81 12 chr3 76378482 76378912 -151145666 + MLT1D LTR MaLR 43 502 -3 237 180 0 0 chr3 76379103 76379153 -151145425 - Alu SINE Alu 0 302 253 * 407 181 0 0 chr3 76379130 76379210 -151145368 - AluJ/FLAM SINE Alu -232 70 5 245 262 62 157 chr3 76379376 76379700 -151144878 - MLT1-int LTR MaLR -41 1330 1038 245 207 35 0 chr3 76379845 76379903 -151144675 + CT-rich Low_complexity Low_complexity 1 60 0 461 173 0 0 chr3 76379944 76380019 -151144559 + Tigger1 DNA MER2_type 230 304 -2114 254 281 50 33 chr3 76380386 76380507 -151144071 - MLT1-int LTR MaLR -830 541 419 528 292 62 27 chr3 76381058 76381336 -151143242 - MLT1G LTR MaLR -293 297 7 1883 126 43 40 chr3 76381454 76381828 -151142750 - THE1C LTR MaLR 0 375 1 252 246 0 0 chr3 76382403 76382472 -151142106 + (TA)n Simple_repeat Simple_repeat 1 69 0 252 299 37 37 chr3 76382476 76382610 -151141968 - L1MC4a LINE L1 -1850 5958 5825 377 335 94 17 chr3 76382664 76383079 -151141499 - L1MC4a LINE L1 -1979 5829 5383 246 180 33 0 chr3 76383196 76383257 -151141321 + L1MC4 LINE L1 6641 6703 -1339 249 159 0 0 chr3 76383262 76383306 -151141272 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 1305 61 6 0 chr3 76383420 76383627 -151140951 + AluY SINE Alu 120 327 0 1797 120 11 14 chr3 76383832 76384137 -151140441 + AluSq SINE Alu 1 304 0 300 53 0 0 chr3 76386809 76386847 -151137731 + (TG)n Simple_repeat Simple_repeat 1 38 0 180 345 127 9 chr3 76386980 76387090 -151137488 - L2 LINE L2 -4 3309 3187 1644 203 49 6 chr3 76387701 76388046 -151136532 + MLT-int LTR MaLR 60 419 -1316 5860 68 0 43 chr3 76388611 76389438 -151135140 - L1PA7 LINE L1 -5 6149 5359 1797 86 43 0 chr3 76389436 76389693 -151134885 + L1PA7 LINE L1 5090 5357 -789 * 1647 161 60 0 chr3 76390299 76390618 -151133960 - AluSx SINE Alu 0 335 1 22 35 0 0 chr3 76390817 76390846 -151133732 + AT_rich Low_complexity Low_complexity 1 29 0 22 70 0 0 chr3 76390998 76391041 -151133537 + AT_rich Low_complexity Low_complexity 1 43 0 763 312 116 48 chr3 76392314 76392933 -151131645 - L2 LINE L2 0 3313 2665 1793 213 19 8 chr3 76393227 76393588 -151130990 + MLT1A1 LTR MaLR 1 365 0 292 357 16 8 chr3 76394097 76394226 -151130352 - MIR SINE MIR -68 194 65 24 0 0 0 chr3 76394685 76394709 -151129869 + AT_rich Low_complexity Low_complexity 1 24 0 1157 86 0 0 chr3 76395145 76395296 -151129282 - AluSc SINE Alu -2 307 157 22 35 0 0 chr3 76395360 76395389 -151129189 + AT_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chr3 76395647 76395678 -151128900 + AT_rich Low_complexity Low_complexity 1 31 0 1927 119 4 4 chr3 76395928 76396206 -151128372 + AluSc SINE Alu 1 278 -31 1065 126 0 0 chr3 76396554 76396729 -151127849 + (TTCC)n Simple_repeat Simple_repeat 4 178 0 864 178 0 0 chr3 76396740 76396920 -151127658 + CT-rich Low_complexity Low_complexity 1 180 0 286 228 0 26 chr3 76396956 76397070 -151127508 + CT-rich Low_complexity Low_complexity 3 113 0 420 325 26 7 chr3 76397214 76397368 -151127210 + MIR SINE MIR 21 177 -85 430 230 14 20 chr3 76397379 76397527 -151127051 + (CATATA)n Simple_repeat Simple_repeat 2 148 0 24 0 0 0 chr3 76400037 76400061 -151124517 + AT_rich Low_complexity Low_complexity 1 24 0 23 54 0 0 chr3 76400405 76400442 -151124136 + AT_rich Low_complexity Low_complexity 1 37 0 283 414 54 0 chr3 76400800 76400986 -151123592 - L2 LINE L2 -245 3068 2873 248 0 31 0 chr3 76401044 76401076 -151123502 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2206 65 7 0 chr3 76401089 76401382 -151123196 - AluSx SINE Alu -17 295 1 1112 47 0 0 chr3 76401385 76401512 -151123066 - AluY SINE Alu -179 132 6 202 206 0 0 chr3 76401517 76401551 -151123027 + polypyrimidine Low_complexity Low_complexity 1 34 0 554 133 0 19 chr3 76402475 76402580 -151121998 + (TCCC)n Simple_repeat Simple_repeat 3 105 0 2008 267 59 17 chr3 76402761 76403473 -151121105 - L1MD2 LINE L1 -220 6533 5792 3081 261 70 61 chr3 76403522 76404867 -151119711 - L1MD2 LINE L1 -979 5561 4230 224 149 21 0 chr3 76404867 76404914 -151119664 + (TA)n Simple_repeat Simple_repeat 1 48 0 3081 261 70 61 chr3 76404914 76405271 -151119307 - L1MD2 LINE L1 -2310 4230 3878 22 35 0 0 chr3 76405271 76405300 -151119278 + AT_rich Low_complexity Low_complexity 1 29 0 20389 92 2 2 chr3 76405301 76408981 -151115597 - L1PA7 LINE L1 -14 6140 2459 3081 261 70 61 chr3 76408981 76409986 -151114592 - L1MD2 LINE L1 -2661 3879 2768 426 230 50 7 chr3 76409989 76410128 -151114450 - L1MD2 LINE L1 -4539 2001 1857 379 256 64 8 chr3 76410141 76410266 -151114312 - L1MD2 LINE L1 -4828 1712 1581 1262 125 0 0 chr3 76410286 76410470 -151114108 - AluSg/x SINE Alu 0 312 129 195 69 0 0 chr3 76410476 76410505 -151114073 + (TTA)n Simple_repeat Simple_repeat 2 30 0 2201 89 0 0 chr3 76410508 76410789 -151113789 - AluY SINE Alu -30 281 1 485 271 52 58 chr3 76410850 76411197 -151113381 - Zaphod DNA AcHobo -190 3841 3497 24 85 0 0 chr3 76412256 76412315 -151112263 + AT_rich Low_complexity Low_complexity 1 59 0 26 50 0 0 chr3 76412675 76412715 -151111863 + AT_rich Low_complexity Low_complexity 1 40 0 537 175 24 63 chr3 76413208 76413334 -151111244 - AluSg/x SINE Alu -72 240 120 562 268 93 39 chr3 76413346 76413963 -151110615 - L1M4 LINE L1 -1796 4350 3665 301 304 137 12 chr3 76413974 76414142 -151110436 - L1M4 LINE L1 -2617 3529 3341 824 291 64 24 chr3 76414150 76414696 -151109882 - L1M4 LINE L1 -2921 3225 2658 328 292 21 10 chr3 76414781 76414877 -151109701 + HAL1 LINE L1 418 514 -1993 7405 32 2 2 chr3 76415117 76416783 -151107795 + L1PA4 LINE L1 4481 6151 -4 251 268 45 69 chr3 76416844 76417090 -151107488 + HAL1 LINE L1 907 1146 -1361 385 358 11 46 chr3 76417517 76417777 -151106801 - MIR SINE MIR -10 252 2 183 355 169 16 chr3 76420363 76420487 -151104091 + MIR SINE MIR 1 143 -119 3042 107 11 2 chr3 76422664 76423104 -151101474 + MLT2A1 LTR ERVL 1 444 0 4735 133 17 25 chr3 76423179 76423947 -151100631 + MER4E LTR ERV1 18 779 0 303 377 83 23 chr3 76423986 76424336 -151100242 + L1MEc LINE L1 194 564 -5832 1140 303 67 7 chr3 76424631 76425063 -151099515 + L1MCc LINE L1 17 474 -5949 229 327 36 18 chr3 76425031 76425141 -151099437 + L1MCc LINE L1 995 1106 -5317 * 1055 319 49 37 chr3 76425261 76426254 -151098324 + L1MCc LINE L1 972 1985 -4887 444 332 5 15 chr3 76426352 76426548 -151098030 + L1MEc LINE L1 29 222 -6174 249 83 0 0 chr3 76427321 76427357 -151097221 + (TTGG)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr3 76427417 76427439 -151097139 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 76428809 76428830 -151095748 + AT_rich Low_complexity Low_complexity 1 21 0 240 214 0 0 chr3 76428983 76429039 -151095539 + CT-rich Low_complexity Low_complexity 2 57 0 185 65 32 0 chr3 76429071 76429102 -151095476 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 5778 215 30 20 chr3 76430097 76431544 -151093034 - L1 LINE L1 -886 5260 3800 759 188 6 6 chr3 76431541 76431706 -151092872 + L1 LINE L1 3644 3808 -2338 * 218 344 0 22 chr3 76431877 76431967 -151092611 + L2 LINE L2 3225 3312 -1 203 179 0 0 chr3 76432722 76432761 -151091817 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1296 337 65 22 chr3 76432933 76433645 -151090933 + L2 LINE L2 1565 2306 -1008 777 317 90 66 chr3 76433647 76434216 -151090362 + L2 LINE L2 2618 3172 -141 1877 112 92 42 chr3 76434216 76434573 -151090005 - THE1C LTR MaLR 0 375 1 777 317 90 66 chr3 76434573 76434584 -151089994 + L2 LINE L2 3172 3181 -132 2450 37 0 14 chr3 76434584 76434879 -151089699 - AluY SINE Alu -17 294 4 777 317 90 66 chr3 76434879 76434943 -151089635 + L2 LINE L2 3181 3275 -38 214 232 183 37 chr3 76435059 76435141 -151089437 + MIR3 SINE MIR 106 199 -9 21 0 0 0 chr3 76436406 76436427 -151088151 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 76436816 76436837 -151087741 + AT_rich Low_complexity Low_complexity 1 21 0 224 122 24 0 chr3 76437414 76437455 -151087123 + (TA)n Simple_repeat Simple_repeat 1 42 0 219 369 14 21 chr3 76437924 76438065 -151086513 - L2 LINE L2 -3012 302 163 1243 248 12 34 chr3 76438755 76439082 -151085496 - MLT1A1 LTR MaLR -12 353 34 2025 118 0 7 chr3 76439354 76439651 -151084927 - AluSx SINE Alu -9 303 9 22 56 0 0 chr3 76440185 76440221 -151084357 + AT_rich Low_complexity Low_complexity 1 36 0 228 222 25 12 chr3 76440793 76440874 -151083704 + (TA)n Simple_repeat Simple_repeat 2 83 0 277 158 18 0 chr3 76441150 76441207 -151083371 - L1P LINE L1 -807 5354 5297 559 200 0 0 chr3 76441209 76441319 -151083259 - L1 LINE L1 -1474 4672 4563 4413 178 126 14 chr3 76441349 76442874 -151081704 - L1PB4 LINE L1 -3 6856 5132 4321 247 27 12 chr3 76442848 76444121 -151080457 - L1PB4 LINE L1 -2734 4115 2824 * 1456 236 18 27 chr3 76444136 76444576 -151080002 - L1PB4 LINE L1 -4603 2246 1811 1061 252 31 44 chr3 76444582 76445077 -151079501 - L1PB4 LINE L1 -4928 1921 1336 419 241 0 0 chr3 76445068 76445155 -151079423 - L1PB4 LINE L1 -5291 1558 1472 * 3225 157 19 7 chr3 76445177 76446072 -151078506 + L1P5 LINE L1 4871 5775 -376 1479 110 9 0 chr3 76446110 76446329 -151078249 - THE1-int LTR MaLR 0 1580 1360 1105 232 96 46 chr3 76446382 76446705 -151077873 + MSTD LTR MaLR 5 343 -53 299 305 29 0 chr3 76448092 76448197 -151076381 - MIR SINE MIR -6 256 149 539 299 65 37 chr3 76448456 76448673 -151075905 - MIR SINE MIR -12 250 28 2142 111 7 0 chr3 76448839 76449146 -151075432 + AluY SINE Alu 1 309 -2 401 359 55 55 chr3 76450866 76451248 -151073330 + L2 LINE L2 392 773 -2541 2052 219 35 10 chr3 76452087 76452571 -151072007 - L1MC2 LINE L1 -11 6333 5838 231 324 14 0 chr3 76452571 76452642 -151071936 + L2 LINE L2 2687 2758 -556 200 335 190 6 chr3 76452681 76452839 -151071739 + MER5A DNA MER1_type 3 189 0 221 167 0 0 chr3 76453011 76453053 -151071525 + (TAA)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chr3 76455267 76455296 -151069282 + AT_rich Low_complexity Low_complexity 1 29 0 181 321 0 0 chr3 76455941 76455997 -151068581 + MER5A DNA MER1_type 132 187 -2 1129 220 4 8 chr3 76456687 76456923 -151067655 + MLT1A1 LTR MaLR 1 235 -130 193 333 91 45 chr3 76457015 76457258 -151067320 - L3 LINE CR1 -7 1570 1317 2742 85 44 10 chr3 76457780 76458191 -151066387 + L1MA1 LINE L1 5874 6298 -4 237 169 77 0 chr3 76458196 76458261 -151066317 + A-rich Low_complexity Low_complexity 2 71 0 2002 144 0 3 chr3 76458762 76459067 -151065511 + AluSq SINE Alu 1 304 -9 26 0 0 0 chr3 76459439 76459465 -151065113 + AT_rich Low_complexity Low_complexity 1 26 0 338 298 57 48 chr3 76459760 76459988 -151064590 + LTR16C LTR ERVL 239 468 -23 1749 190 54 3 chr3 76460011 76460342 -151064236 + MER7A DNA MER2_type 1 346 0 394 131 41 0 chr3 76461116 76461238 -151063340 + (TA)n Simple_repeat Simple_repeat 2 128 0 349 249 205 32 chr3 76462282 76462589 -151061989 - MLT1I LTR MaLR -49 360 1 660 292 38 30 chr3 76462697 76462961 -151061617 - L1ME3A LINE L1 -67 6103 5838 309 51 0 0 chr3 76463234 76463273 -151061305 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 780 238 7 0 chr3 76463274 76463425 -151061153 - FAM SINE Alu -27 158 7 413 276 13 19 chr3 76463705 76463722 -151060856 - L1MB1 LINE L1 -324 5865 5849 845 275 15 8 chr3 76463722 76463984 -151060594 - L1ME3A LINE L1 -320 5850 5587 25 65 0 0 chr3 76464096 76464142 -151060436 + AT_rich Low_complexity Low_complexity 1 46 0 276 375 36 0 chr3 76464146 76464397 -151060181 - L1P5 LINE L1 -598 5553 5294 488 271 76 50 chr3 76464510 76464934 -151059644 - L1MEc LINE L1 -3668 2547 2151 2074 122 0 3 chr3 76465108 76465403 -151059175 + AluSx SINE Alu 3 296 -16 273 316 63 50 chr3 76465475 76466093 -151058485 - L1MEc LINE L1 -861 1715 1246 1594 160 0 19 chr3 76466216 76466478 -151058100 - AluSx SINE Alu -11 301 45 253 144 19 144 chr3 76466676 76466780 -151057798 + L1MC4 LINE L1 6614 6704 -1338 1874 172 72 5 chr3 76466899 76467300 -151057278 + MSTB1 LTR MaLR 1 428 -4 1441 100 0 5 chr3 76467433 76467623 -151056955 - AluSg/x SINE Alu -10 302 114 226 217 0 33 chr3 76467810 76467870 -151056708 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 651 259 99 44 chr3 76467897 76468530 -151056048 - L1M4 LINE L1 -1362 4784 4117 1321 342 82 40 chr3 76469146 76470536 -151054042 - ERVL LTR ERVL -2473 3291 1843 1788 155 32 45 chr3 76470558 76470597 -151053981 - THE1C LTR MaLR 0 375 337 2360 70 3 3 chr3 76470597 76470898 -151053680 + AluSp SINE Alu 1 301 -12 1788 155 32 45 chr3 76470898 76471238 -151053340 - THE1C LTR MaLR -38 337 1 242 120 0 40 chr3 76471414 76471464 -151053114 - L1MD1 LINE L1 0 6242 6195 2361 194 63 8 chr3 76471469 76471948 -151052630 - MLT2B1 LTR ERVL -15 505 1 666 176 21 28 chr3 76471948 76472090 -151052488 - L1MD1 LINE L1 -37 6205 6065 755 223 13 0 chr3 76472092 76472249 -151052329 + FRAM SINE Alu 2 160 -16 1999 147 0 0 chr3 76472252 76472551 -151052027 + AluSc SINE Alu 1 299 -10 2092 141 0 0 chr3 76472569 76472866 -151051712 + AluSg SINE Alu 1 297 -13 180 0 0 0 chr3 76472872 76472892 -151051686 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1240 238 67 9 chr3 76472899 76473278 -151051300 - L1MD1 LINE L1 -165 6077 5678 697 304 61 15 chr3 76473281 76473754 -151050824 - L1MD1 LINE L1 -1386 4760 4266 3505 265 66 20 chr3 76473808 76474600 -151049978 - L1M4 LINE L1 -1673 4971 4217 3770 133 46 50 chr3 76474600 76475294 -151049284 - LTR8 LTR ERV1 0 691 1 3505 265 66 20 chr3 76475294 76476043 -151048535 - L1M4 LINE L1 -2427 4217 3359 536 232 61 10 chr3 76476056 76476161 -151048417 + L1M4c LINE L1 1964 2062 -4322 2172 116 48 22 chr3 76476161 76476516 -151048062 + THE1B LTR MaLR 1 364 0 536 232 61 10 chr3 76476516 76476608 -151047970 + L1M4c LINE L1 2062 2171 -4213 2900 248 46 76 chr3 76476634 76476761 -151047817 - L1M4 LINE L1 -4536 2110 1981 2511 157 19 2 chr3 76476761 76477188 -151047390 + MER57B LTR ERV1 1 434 0 2900 248 46 76 chr3 76477188 76478008 -151046570 - L1M4 LINE L1 -4665 1981 1138 1855 198 28 3 chr3 76478008 76478362 -151046216 - MLT1A1 LTR MaLR 0 365 3 2900 248 46 76 chr3 76478362 76479566 -151045012 - L1M4 LINE L1 -5508 1138 3 21 36 0 0 chr3 76479579 76479607 -151044971 + AT_rich Low_complexity Low_complexity 1 28 0 2209 115 3 3 chr3 76480967 76481279 -151043299 + AluSq SINE Alu 2 313 0 880 291 50 11 chr3 76482165 76482443 -151042135 - LTR16A1 LTR ERVL 0 457 169 1993 230 34 4 chr3 76482569 76483042 -151041536 - L1MA7 LINE L1 -12 6279 5793 21 0 0 0 chr3 76483360 76483381 -151041197 + AT_rich Low_complexity Low_complexity 1 21 0 458 319 128 32 chr3 76483383 76483665 -151040913 + L1MEd LINE L1 400 708 -5411 238 260 128 73 chr3 76483677 76483965 -151040613 + L1ME LINE L1 7 310 -5760 1880 157 7 3 chr3 76484019 76484324 -151040254 - AluSx SINE Alu -6 306 1 237 208 21 0 chr3 76484331 76484379 -151040199 + MLT1G3 LTR MaLR 150 198 -332 1741 147 77 34 chr3 76484379 76484732 -151039846 + LTR29 LTR ERV1 1 368 -254 33 0 0 0 chr3 76485192 76485225 -151039353 + AT_rich Low_complexity Low_complexity 1 33 0 332 273 61 0 chr3 76487002 76487101 -151037477 + L1ME LINE L1 5504 5608 -554 274 262 29 29 chr3 76487488 76487591 -151036987 - MIR SINE MIR -14 248 146 26 0 0 0 chr3 76487914 76487940 -151036638 + AT_rich Low_complexity Low_complexity 1 26 0 211 271 0 0 chr3 76487958 76488017 -151036561 + (TG)n Simple_repeat Simple_repeat 2 60 0 321 65 22 0 chr3 76488698 76488744 -151035834 + MADE1 DNA Mariner 1 47 -33 309 104 0 0 chr3 76488772 76488820 -151035758 - MADE1 DNA Mariner -32 48 1 217 244 0 0 chr3 76489430 76489475 -151035103 + (TATATG)n Simple_repeat Simple_repeat 4 48 0 251 376 79 41 chr3 76489640 76490007 -151034571 - L2 LINE L2 -1 3271 2891 209 184 0 0 chr3 76490395 76490433 -151034145 + L2 LINE L2 3262 3299 -14 1098 332 72 7 chr3 76490640 76491095 -151033483 + MER69 DNA AcHobo 24 508 -718 230 269 57 50 chr3 76491114 76491255 -151033323 + MER69 DNA AcHobo 1943 2084 -442 25 51 0 0 chr3 76491756 76491795 -151032783 + AT_rich Low_complexity Low_complexity 1 39 0 6720 144 46 6 chr3 76492199 76493381 -151031197 - Tigger3b DNA MER2_type -1 1230 2 281 290 19 9 chr3 76493381 76493488 -151031090 + (TA)n Simple_repeat Simple_repeat 2 109 0 585 64 0 0 chr3 76494598 76494676 -151029902 + (TTCC)n Simple_repeat Simple_repeat 3 80 0 1827 127 7 7 chr3 76494676 76494960 -151029618 - AluSx SINE Alu -28 284 1 1742 156 10 0 chr3 76495391 76495680 -151028898 - AluSx SINE Alu -8 304 13 2405 107 55 5 chr3 76496077 76496461 -151028117 + L1MA1 LINE L1 5898 6300 -2 25 0 0 0 chr3 76496571 76496596 -151027982 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr3 76496906 76496941 -151027637 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr3 76498929 76498967 -151025611 + AT_rich Low_complexity Low_complexity 1 38 0 2232 96 0 0 chr3 76499004 76499295 -151025283 + AluSx SINE Alu 1 291 -21 21 0 0 0 chr3 76499947 76499968 -151024610 + AT_rich Low_complexity Low_complexity 1 21 0 681 194 0 0 chr3 76500221 76500329 -151024249 + Tigger3(Golem) DNA MER2_type 1 108 -2921 583 83 193 0 chr3 76500329 76500438 -151024140 + Tigger3(Golem) DNA MER2_type 2284 2413 -616 2187 95 0 10 chr3 76500438 76500742 -151023836 + AluSx SINE Alu 1 301 -11 1557 181 13 40 chr3 76501276 76501575 -151023003 + AluJb SINE Alu 1 291 -21 258 299 41 72 chr3 76501804 76501901 -151022677 + L2 LINE L2 3210 3303 -10 733 132 25 16 chr3 76503025 76503146 -151021432 + FLAM_C SINE Alu 2 123 -10 297 0 0 0 chr3 76503367 76503400 -151021178 + (T)n Simple_repeat Simple_repeat 1 33 0 2360 171 7 18 chr3 76503705 76504145 -151020433 - MER65A LTR ERV1 -8 437 3 291 93 0 0 chr3 76504339 76504382 -151020196 + (TG)n Simple_repeat Simple_repeat 2 44 0 23 33 0 0 chr3 76504980 76505010 -151019568 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr3 76505248 76505285 -151019293 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr3 76505992 76506017 -151018561 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr3 76506490 76506512 -151018066 + AT_rich Low_complexity Low_complexity 1 22 0 1328 167 51 33 chr3 76506521 76506797 -151017781 + AluSg SINE Alu 1 281 -19 21 0 0 0 chr3 76507133 76507154 -151017424 + AT_rich Low_complexity Low_complexity 1 21 0 1017 162 54 84 chr3 76507468 76507765 -151016813 + L1MA9 LINE L1 4361 4648 -1498 * 42694 32 21 1 chr3 76507760 76513823 -151010755 + L1PA2 LINE L1 13 6198 0 4453 194 56 23 chr3 76513823 76515428 -151009150 + L1MA9 LINE L1 4621 6277 -35 222 91 0 0 chr3 76515557 76515590 -151008988 + (TAAAAA)n Simple_repeat Simple_repeat 4 36 0 719 323 94 19 chr3 76515798 76516433 -151008145 + L1MC4a LINE L1 5255 5937 -1871 189 102 0 61 chr3 76516597 76516646 -151007932 + (TATATG)n Simple_repeat Simple_repeat 3 48 0 317 307 146 20 chr3 76517975 76518421 -151006157 + HAL1 LINE L1 788 1289 -1218 1346 208 44 7 chr3 76518428 76518702 -151005876 - MER44D DNA MER2_type -1 604 449 1364 212 44 9 chr3 76518771 76519157 -151005421 - MER44D DNA MER2_type -245 460 13 239 272 19 95 chr3 76519157 76519315 -151005263 + HAL1 LINE L1 1299 1444 -1063 594 148 0 0 chr3 76519834 76519935 -151004643 + (GGAA)n Simple_repeat Simple_repeat 2 102 0 2055 129 3 3 chr3 76519950 76520259 -151004319 - AluSx SINE Alu -2 310 2 292 275 152 33 chr3 76520291 76520411 -151004167 + HAL1 LINE L1 2063 2167 -340 351 65 0 0 chr3 76520411 76520457 -151004121 + (TA)n Simple_repeat Simple_repeat 2 47 0 216 0 0 0 chr3 76520467 76520491 -151004087 + (TG)n Simple_repeat Simple_repeat 2 25 0 292 275 152 33 chr3 76520491 76520635 -151003943 + HAL1 LINE L1 2174 2371 -136 303 249 75 109 chr3 76520662 76520863 -151003715 + L2 LINE L2 3120 3313 0 35 54 0 0 chr3 76520954 76521010 -151003568 + AT_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr3 76522331 76522355 -151002223 + AT_rich Low_complexity Low_complexity 1 24 0 192 295 151 43 chr3 76522553 76522692 -151001886 - MER5B DNA MER1_type 0 178 25 352 245 41 20 chr3 76523407 76523505 -151001073 + MIR SINE MIR 84 183 -79 993 331 14 11 chr3 76523549 76523905 -151000673 + LTR16B LTR ERVL 34 390 -74 192 307 13 13 chr3 76523910 76523985 -151000593 + MIR SINE MIR 186 260 -2 21 0 0 0 chr3 76524656 76524677 -150999901 + AT_rich Low_complexity Low_complexity 1 21 0 27 81 0 0 chr3 76524895 76524957 -150999621 + AT_rich Low_complexity Low_complexity 1 62 0 683 233 78 11 chr3 76525516 76525696 -150998882 - LTR47A LTR ERVL 0 452 261 12104 161 19 10 chr3 76525933 76528039 -150996539 + Tigger1 DNA MER2_type 1 2125 -293 1118 261 113 7 chr3 76528637 76529089 -150995489 + L1ME1 LINE L1 5664 6163 -3 28 48 0 0 chr3 76529146 76529188 -150995390 + AT_rich Low_complexity Low_complexity 1 42 0 254 248 18 18 chr3 76529463 76529572 -150995006 + (TTATA)n Simple_repeat Simple_repeat 2 110 0 402 221 67 0 chr3 76530604 76530708 -150993870 - L1ME3A LINE L1 -111 6059 5949 290 357 174 0 chr3 76532365 76532561 -150992017 + MIR SINE MIR 15 244 -18 2334 60 7 3 chr3 76532851 76533152 -150991426 - AluY SINE Alu -9 302 1 240 322 96 0 chr3 76533881 76533996 -150990582 + MIR3 SINE MIR 38 163 -45 238 151 27 0 chr3 76534397 76534470 -150990108 + (TA)n Simple_repeat Simple_repeat 1 75 0 28 71 0 0 chr3 76534473 76534529 -150990049 + AT_rich Low_complexity Low_complexity 1 56 0 32 43 0 0 chr3 76535677 76535723 -150988855 + AT_rich Low_complexity Low_complexity 1 46 0 1271 231 32 62 chr3 76536073 76536475 -150988103 + MLT1B LTR MaLR 1 390 0 391 257 28 9 chr3 76536813 76536922 -150987656 + MER81 DNA DNA 2 112 -2 1416 30 0 0 chr3 76537108 76537276 -150987302 + AluY SINE Alu 131 298 -13 1366 70 0 11 chr3 76537289 76537474 -150987104 + L1PA7 LINE L1 5964 6146 -8 205 200 0 0 chr3 76537969 76538004 -150986574 + (CA)n Simple_repeat Simple_repeat 2 36 0 431 268 41 0 chr3 76538235 76538358 -150986220 + L1M4 LINE L1 4075 4202 -1944 655 181 31 25 chr3 76538396 76538556 -150986022 - L1MA8 LINE L1 0 6291 6131 2239 87 0 26 chr3 76538557 76538868 -150985710 - AluY SINE Alu -8 303 1 207 88 0 0 chr3 76538913 76538947 -150985631 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 343 0 68 0 chr3 76538947 76538991 -150985587 - L1PA4 LINE L1 -7 6148 6102 754 43 0 0 chr3 76538992 76539085 -150985493 + L1PA2 LINE L1 6008 6100 -55 * 4486 154 34 36 chr3 76539082 76540113 -150984465 - L1MA8 LINE L1 -151 6140 5116 256 340 107 36 chr3 76540195 76540448 -150984130 - LTR16C LTR ERVL -177 314 44 2338 47 0 50 chr3 76541732 76542053 -150982525 - AluY SINE Alu -6 305 1 21 0 0 0 chr3 76542064 76542085 -150982493 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 76542307 76542329 -150982249 + AT_rich Low_complexity Low_complexity 1 22 0 843 290 80 52 chr3 76543020 76543420 -150981158 - MLT1J1 LTR MaLR 0 446 36 1386 172 55 14 chr3 76543613 76544090 -150980488 + L1MC2 LINE L1 5328 5784 -560 302 67 22 0 chr3 76544090 76544135 -150980443 + (TA)n Simple_repeat Simple_repeat 1 46 0 1386 172 55 14 chr3 76544135 76544435 -150980143 + L1MC2 LINE L1 5784 6318 -26 27 0 0 0 chr3 76545546 76545573 -150979005 + AT_rich Low_complexity Low_complexity 1 27 0 620 278 74 22 chr3 76546094 76546364 -150978214 - MARNA DNA Mariner -125 461 178 430 299 90 92 chr3 76546649 76547114 -150977464 - L2 LINE L2 0 3313 2850 960 305 203 18 chr3 76547150 76547328 -150977250 - L2 LINE L2 -2206 1108 964 2244 139 8 19 chr3 76547328 76547696 -150976882 + THE1B LTR MaLR 1 364 0 960 305 203 18 chr3 76547696 76548173 -150976405 - L2 LINE L2 -2350 964 332 1727 160 17 14 chr3 76548309 76548602 -150975976 - AluJb SINE Alu -18 294 1 643 352 63 25 chr3 76548732 76549175 -150975403 + L3 LINE CR1 1051 1510 -67 1263 204 12 75 chr3 76552783 76552998 -150971580 + L1M4 LINE L1 2715 2893 -3253 2120 103 10 7 chr3 76552998 76553299 -150971279 + AluSc SINE Alu 2 303 -6 1263 204 12 75 chr3 76553299 76553495 -150971083 + L1M4 LINE L1 2893 3100 -3046 * 6020 83 23 1 chr3 76553481 76554301 -150970277 - L1P LINE L1 -5302 844 7 10193 43 0 0 chr3 76554303 76555565 -150969013 + L1P LINE L1 1245 2506 -3640 548 374 36 33 chr3 76555577 76556331 -150968247 + PABL_B-int LTR ERV1 3541 4296 -2826 630 336 41 47 chr3 76556666 76557467 -150967111 + PABL_B-int LTR ERV1 5340 6135 -1621 510 368 40 9 chr3 76558765 76559113 -150965465 + PABL_B-int LTR ERV1 6085 6443 -233 1766 128 126 92 chr3 76559497 76559911 -150964667 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr3 76562999 76563021 -150961557 + AT_rich Low_complexity Low_complexity 1 22 0 1301 275 69 46 chr3 76563317 76564285 -150960293 + L1MEc LINE L1 1879 2858 -3357 615 89 22 0 chr3 76564285 76564375 -150960203 + L1MA1 LINE L1 6207 6298 -4 1301 275 69 46 chr3 76564375 76564860 -150959718 + L1MEc LINE L1 2858 3330 -2885 24 32 0 0 chr3 76566616 76566647 -150957931 + AT_rich Low_complexity Low_complexity 1 31 0 364 289 10 10 chr3 76567976 76568080 -150956498 + MIR SINE MIR 41 144 -64 184 324 14 28 chr3 76569446 76569517 -150955061 - L3 LINE CR1 -11 1566 1497 186 43 0 0 chr3 76569536 76569559 -150955019 + (TG)n Simple_repeat Simple_repeat 1 23 0 742 341 57 22 chr3 76569559 76569654 -150954924 + L2 LINE L2 2529 2619 -694 2227 88 0 0 chr3 76569654 76569966 -150954612 + AluY SINE Alu 1 312 0 742 341 57 22 chr3 76569966 76570489 -150954089 + L2 LINE L2 2619 3171 -142 312 375 59 22 chr3 76570500 76570855 -150953723 - ERVL LTR ERVL -1461 4303 3936 1641 170 183 3 chr3 76571454 76571837 -150952741 - LTR47A LTR ERVL 0 452 1 297 376 48 0 chr3 76572329 76572454 -150952124 - L3 LINE CR1 -1265 312 182 914 205 61 41 chr3 76572652 76572804 -150951774 + MSTD LTR MaLR 1 149 -247 2071 117 10 13 chr3 76572804 76573113 -150951465 + AluSp SINE Alu 1 308 -5 914 205 61 41 chr3 76573113 76573311 -150951267 + MSTD LTR MaLR 149 396 0 493 294 6 0 chr3 76573614 76573784 -150950794 + Charlie2a DNA MER1_type 1467 1637 -1225 1643 193 87 97 chr3 76573835 76574077 -150950501 - MLT2B3 LTR ERVL -2 552 309 1784 158 55 38 chr3 76574077 76574444 -150950134 + THE1C LTR MaLR 1 373 -2 1643 193 87 97 chr3 76574444 76574756 -150949822 - MLT2B3 LTR ERVL -245 309 4 23 54 0 0 chr3 76574782 76574819 -150949759 + AT_rich Low_complexity Low_complexity 1 37 0 10913 182 10 14 chr3 76574978 76577405 -150947173 - L1P4 LINE L1 -603 5558 3140 3702 122 4 0 chr3 76577405 76577940 -150946638 + L1PA14 LINE L1 5611 6161 0 1943 165 7 0 chr3 76577954 76578263 -150946315 + AluJb SINE Alu 1 311 -1 22 0 0 0 chr3 76578271 76578293 -150946285 + AT_rich Low_complexity Low_complexity 1 22 0 53 63 0 0 chr3 76578336 76578431 -150946147 + AT_rich Low_complexity Low_complexity 1 95 0 21 36 0 0 chr3 76578519 76578547 -150946031 + AT_rich Low_complexity Low_complexity 1 28 0 216 328 95 0 chr3 76578693 76578809 -150945769 - MIR SINE MIR -44 218 92 1494 266 103 14 chr3 76578951 76579376 -150945202 + MLT2B1 LTR ERVL 1 463 -57 327 193 0 0 chr3 76579391 76579474 -150945104 + (TA)n Simple_repeat Simple_repeat 1 83 0 195 100 0 0 chr3 76579475 76579505 -150945073 + (CA)n Simple_repeat Simple_repeat 2 31 0 323 100 0 40 chr3 76579509 76579559 -150945019 + MLT2B1 LTR ERVL 417 464 0 469 339 116 45 chr3 76579591 76580057 -150944521 - L2 LINE L2 -372 2942 2444 1190 236 116 3 chr3 76580083 76580427 -150944151 - LTR52 LTR ERVL -38 383 1 182 316 37 59 chr3 76580427 76580563 -150944015 - L2 LINE L2 -862 2452 2320 219 354 22 66 chr3 76580757 76580880 -150943698 - L2 LINE L2 -176 3096 2969 1777 189 131 11 chr3 76580880 76581262 -150943316 - MSTA LTR MaLR 0 428 1 8456 144 43 45 chr3 76581262 76582843 -150941735 - MSTA-int LTR MaLR 0 1580 3 1687 169 114 52 chr3 76582845 76583248 -150941330 - MSTA LTR MaLR 0 428 1 219 354 22 66 chr3 76583248 76583301 -150941277 - L2 LINE L2 -303 2969 2924 315 0 0 0 chr3 76587460 76587495 -150937083 + (A)n Simple_repeat Simple_repeat 1 35 0 298 304 82 7 chr3 76588121 76588256 -150936322 - L3 LINE CR1 -189 1388 1244 776 315 96 17 chr3 76588264 76588670 -150935908 - L3 LINE CR1 -710 867 430 183 330 104 9 chr3 76588897 76589003 -150935575 - L3 LINE CR1 -1192 385 270 325 284 122 34 chr3 76589141 76589289 -150935289 + MER5B DNA MER1_type 13 173 -5 367 313 0 10 chr3 76589841 76589937 -150934641 + MER5A DNA MER1_type 7 101 -88 387 318 56 31 chr3 76590143 76590338 -150934240 + MIR SINE MIR 57 256 -6 209 403 16 8 chr3 76590419 76590543 -150934035 + MIR3 SINE MIR 30 154 -54 3351 89 14 8 chr3 76591426 76591909 -150932669 + LTR19A LTR ERV1 1 486 0 7778 170 102 102 chr3 76591909 76593078 -150931500 + LTR19A-int LTR ERV1 1 1168 -4418 408 127 0 0 chr3 76593078 76593141 -150931437 - AluS SINE Alu -239 74 12 463 108 0 0 chr3 76593142 76593207 -150931371 + AluSp/q SINE Alu 230 294 -19 7778 170 102 102 chr3 76593207 76594915 -150929663 + LTR19A-int LTR ERV1 1167 3007 -2579 2391 101 18 0 chr3 76594894 76595231 -150929347 + LTR19A-int LTR ERV1 3816 4158 -1428 * 1953 109 3 14 chr3 76595214 76595497 -150929081 + LTR19A-int LTR ERV1 5307 5586 0 * 3314 91 14 8 chr3 76595497 76595980 -150928598 + LTR19A LTR ERV1 1 486 0 1882 183 69 34 chr3 76598130 76598205 -150926373 + MLT1C LTR MaLR 5 76 -391 2466 122 8 3 chr3 76598205 76598567 -150926011 - THE1B LTR MaLR 0 364 1 1882 183 69 34 chr3 76598567 76598938 -150925640 + MLT1C LTR MaLR 76 467 0 255 210 48 16 chr3 76599052 76599114 -150925464 + MER69 DNA AcHobo 20 83 -94 30 0 0 0 chr3 76599123 76599153 -150925425 + AT_rich Low_complexity Low_complexity 1 30 0 27 62 0 0 chr3 76599502 76599550 -150925028 + AT_rich Low_complexity Low_complexity 1 48 0 2839 222 25 5 chr3 76599682 76600321 -150924257 + MER82 DNA MER2_type 2 653 0 979 233 67 54 chr3 76600590 76600904 -150923674 + MLT2B1 LTR ERVL 1 318 -202 967 98 0 0 chr3 76601216 76601349 -150923229 + AluY SINE Alu 175 307 -4 1157 226 0 4 chr3 76601493 76601723 -150922855 - AluJb SINE Alu -83 229 1 303 299 43 75 chr3 76601724 76601911 -150922667 - MIR SINE MIR -5 257 77 1275 0 13 6 chr3 76601919 76602075 -150922503 + (TCTA)n Simple_repeat Simple_repeat 4 160 0 601 353 61 24 chr3 76602148 76602525 -150922053 + MLT1K LTR MaLR 149 539 -49 288 295 39 39 chr3 76602565 76602643 -150921935 - MIR SINE MIR -165 97 20 1326 204 21 57 chr3 76602658 76603041 -150921537 - L1MB8 LINE L1 -11 6167 5799 426 223 19 0 chr3 76603069 76603172 -150921406 - L1M4 LINE L1 -3047 3099 2995 * 429 208 94 20 chr3 76603171 76603320 -150921258 - L1MB8 LINE L1 -390 5794 5635 704 264 60 4 chr3 76603323 76603588 -150920990 + L1M4 LINE L1 2944 3223 -2923 3545 247 59 56 chr3 76603591 76605104 -150919474 - L1MB8 LINE L1 -1762 4384 2864 2265 106 21 0 chr3 76605104 76605443 -150919135 - L1PA13 LINE L1 -5 6158 5813 3545 247 59 56 chr3 76605443 76605754 -150918824 - L1MB8 LINE L1 -3282 2864 2555 272 312 63 24 chr3 76605733 76606215 -150918363 - L1M4c LINE L1 -3966 2993 2550 * 1009 355 19 14 chr3 76606251 76606614 -150917964 - L1M4c LINE L1 -6219 640 276 23 33 0 0 chr3 76607380 76607410 -150917168 + AT_rich Low_complexity Low_complexity 1 30 0 58 54 0 0 chr3 76607579 76607672 -150916906 + AT_rich Low_complexity Low_complexity 1 93 0 285 263 62 50 chr3 76607913 76608092 -150916486 + L1ME LINE L1 5623 5803 -318 2396 238 43 10 chr3 76608117 76608692 -150915886 + L1M2b LINE L1 1 594 -6615 894 218 7 6 chr3 76608692 76611074 -150913504 + ALR/Alpha Satellite centromeric 1 2377 -5834 8420 30 1 0 chr3 76611074 76612853 -150911725 - L1PA3 LINE L1 -3 6152 4372 894 218 7 6 chr3 76612853 76614483 -150910095 + ALR/Alpha Satellite centromeric 2377 4002 -4209 2211 101 3 7 chr3 76614483 76614780 -150909798 + AluY SINE Alu 1 296 -15 894 218 7 6 chr3 76614780 76616877 -150907701 + ALR/Alpha Satellite centromeric 4002 8200 -11 601 239 6 0 chr3 76616892 76617055 -150907523 + ALR/Alpha Satellite centromeric 9 172 0 927 206 11 12 chr3 76617070 76617791 -150906787 + ALR/Alpha Satellite centromeric 1 741 -641 207 0 0 0 chr3 76617791 76617814 -150906764 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 927 206 11 12 chr3 76617814 76618451 -150906127 + ALR/Alpha Satellite centromeric 741 1378 -4 937 222 7 3 chr3 76618463 76624606 -150899972 + ALR/Alpha Satellite centromeric 1 6120 -6889 1971 105 10 36 chr3 76624606 76624911 -150899667 + AluY SINE Alu 1 297 -14 937 222 7 3 chr3 76624911 76631423 -150893155 + ALR/Alpha Satellite centromeric 6120 13008 -1 6088 195 24 26 chr3 76631424 76632293 -150892285 + L1MA4A LINE L1 3938 4807 -1496 1968 147 13 3 chr3 76632293 76632592 -150891986 + AluSx SINE Alu 1 302 -10 6088 195 24 26 chr3 76632592 76633095 -150891483 + L1MA4A LINE L1 4807 5310 -993 201 74 0 0 chr3 76633095 76633122 -150891456 + (CAA)n Simple_repeat Simple_repeat 3 29 0 6088 195 24 26 chr3 76633122 76633639 -150890939 + L1MA4A LINE L1 5310 5829 -474 186 308 0 0 chr3 76633648 76633700 -150890878 - MIR SINE MIR -157 105 54 437 122 0 176 chr3 76634691 76634822 -150889756 - L1MA3 LINE L1 0 6305 6198 28 50 0 17 chr3 76636500 76636537 -150888041 + AT_rich Low_complexity Low_complexity 1 38 -21 367 22 0 0 chr3 76636537 76636583 -150887995 - L1PA3 LINE L1 -3 6152 6107 28 50 0 17 chr3 76636583 76636605 -150887973 + AT_rich Low_complexity Low_complexity 38 59 0 255 228 0 51 chr3 76637565 76637644 -150886934 + GA-rich Low_complexity Low_complexity 2 76 0 45 19 0 0 chr3 76637654 76637706 -150886872 + AT_rich Low_complexity Low_complexity 1 52 0 432 64 26 13 chr3 76637995 76638073 -150886505 + (TA)n Simple_repeat Simple_repeat 1 79 0 419 319 91 25 chr3 76638356 76638800 -150885778 + HERV16 LTR ERVL 1638 2055 -2941 845 332 126 38 chr3 76639133 76640028 -150884550 + HERV16 LTR ERVL 2814 3787 -1867 248 270 87 32 chr3 76640357 76640483 -150884095 - MLT1H LTR MaLR -394 155 23 602 327 27 12 chr3 76640539 76640796 -150883782 + HERV16 LTR ERVL 3871 4131 -1633 180 229 0 71 chr3 76642067 76642137 -150882441 + L2 LINE L2 3153 3217 -96 380 333 122 0 chr3 76642546 76642726 -150881852 - MIR SINE MIR -31 231 30 23 0 0 0 chr3 76643393 76643416 -150881162 + AT_rich Low_complexity Low_complexity 1 23 0 2088 71 0 14 chr3 76643542 76643850 -150880728 + AluSc SINE Alu 1 304 0 8978 88 1 9 chr3 76644305 76644817 -150879761 - L1P LINE L1 -1397 4749 4234 2123 116 0 26 chr3 76644817 76645128 -150879450 - AluY SINE Alu -8 303 1 8978 88 1 9 chr3 76645128 76645876 -150878702 - L1P LINE L1 -1908 4238 3498 6760 72 1 2 chr3 76645876 76647289 -150877289 + L1PA7 LINE L1 4733 6148 -6 3940 80 0 4 chr3 76648756 76649269 -150875309 - MER9 LTR ERVK 0 511 1 27 0 0 0 chr3 76650209 76650236 -150874342 + AT_rich Low_complexity Low_complexity 1 27 0 595 257 115 18 chr3 76650513 76650731 -150873847 + MIR SINE MIR 9 247 -15 1298 207 40 65 chr3 76650792 76651124 -150873454 + MLT1A1 LTR MaLR 3 327 -38 1754 123 8 19 chr3 76651124 76651384 -150873194 - AluSp SINE Alu -18 295 39 1298 207 40 65 chr3 76651384 76651423 -150873155 + MLT1A1 LTR MaLR 327 365 0 1684 114 4 4 chr3 76651647 76651883 -150872695 + AluSx SINE Alu 64 299 -13 1214 130 6 0 chr3 76651884 76652061 -150872517 + AluSg/x SINE Alu 135 312 0 22 70 0 0 chr3 76653791 76653834 -150870744 + AT_rich Low_complexity Low_complexity 1 43 0 213 240 20 0 chr3 76655286 76655336 -150869242 + (CATATA)n Simple_repeat Simple_repeat 1 51 0 242 89 44 0 chr3 76655517 76655562 -150869016 + (TAGA)n Simple_repeat Simple_repeat 1 47 0 24 0 0 0 chr3 76655988 76656012 -150868566 + AT_rich Low_complexity Low_complexity 1 24 0 7371 149 36 8 chr3 76656079 76657268 -150867310 - THE1C-int LTR MaLR -357 1223 1 939 106 35 14 chr3 76657268 76657541 -150867037 - THE1C LTR MaLR 0 375 3 21 71 0 0 chr3 76658360 76658402 -150866176 + AT_rich Low_complexity Low_complexity 1 42 0 354 302 173 2 chr3 76658775 76658961 -150865617 + MIR SINE MIR 20 240 -22 283 120 40 0 chr3 76659129 76659179 -150865399 - MLT1C LTR MaLR -415 52 1 426 234 131 41 chr3 76659237 76659498 -150865080 + MLT1H LTR MaLR 254 542 0 498 246 66 33 chr3 76661156 76661339 -150863239 + MER5A DNA MER1_type 1 189 0 239 299 231 0 chr3 76661888 76662022 -150862556 + MIR3 SINE MIR 16 180 -28 284 329 47 35 chr3 76663098 76663268 -150861310 - MIR3 SINE MIR 0 208 37 25 75 0 0 chr3 76664455 76664508 -150860070 + AT_rich Low_complexity Low_complexity 1 53 0 27 49 0 0 chr3 76664930 76664971 -150859607 + AT_rich Low_complexity Low_complexity 1 41 0 16983 175 69 54 chr3 76666080 76670676 -150853902 - L1P LINE L1 -1471 4675 12 215 352 9 19 chr3 76670689 76670797 -150853781 + MIR SINE MIR 124 230 -32 201 39 0 0 chr3 76671390 76671416 -150853162 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1524 210 0 24 chr3 76671418 76671713 -150852865 - AluJb SINE Alu -22 290 3 189 0 0 0 chr3 76671733 76671754 -150852824 + (TC)n Simple_repeat Simple_repeat 2 22 0 287 240 25 8 chr3 76671754 76671875 -150852703 + (TA)n Simple_repeat Simple_repeat 2 124 0 288 109 0 55 chr3 76671875 76671930 -150852648 + MLT2B1 LTR ERVL 462 513 -7 325 277 8 110 chr3 76672571 76672691 -150851887 - MLT2B1 LTR ERVL -136 384 228 629 255 13 20 chr3 76673073 76673226 -150851352 - MER5A DNA MER1_type 0 189 38 1767 175 19 78 chr3 76673628 76673787 -150850791 - MER89 LTR ERV1 0 559 392 2592 30 0 0 chr3 76673787 76674084 -150850494 + AluY SINE Alu 1 297 -14 1767 175 19 78 chr3 76674084 76674414 -150850164 - MER89 LTR ERV1 -167 392 1 276 287 28 19 chr3 76674551 76674659 -150849919 - MLT1I LTR MaLR -203 206 98 27 49 0 0 chr3 76675076 76675117 -150849461 + AT_rich Low_complexity Low_complexity 1 41 0 745 231 234 15 chr3 76675554 76675888 -150848690 + LTR50 LTR ERVL 5 411 -384 229 336 56 8 chr3 76675899 76676024 -150848554 + LTR50 LTR ERVL 513 643 -152 275 181 69 0 chr3 76676138 76676210 -150848368 + LTR50 LTR ERVL 717 793 -2 2297 43 3 30 chr3 76676225 76676526 -150848052 + AluY SINE Alu 2 294 -17 23 33 0 0 chr3 76676534 76676564 -150848014 + AT_rich Low_complexity Low_complexity 1 30 0 216 67 0 0 chr3 76677096 76677126 -150847452 + (CA)n Simple_repeat Simple_repeat 2 31 0 192 321 0 0 chr3 76677227 76677280 -150847298 + L2 LINE L2 3220 3272 0 2001 124 3 0 chr3 76677747 76678062 -150846516 + AluSp SINE Alu 1 316 0 231 233 39 39 chr3 76678167 76678270 -150846308 + MLT1K LTR MaLR 328 430 -158 1083 142 34 39 chr3 76678834 76679067 -150845511 - L1MA8 LINE L1 -5 6286 6055 753 340 50 38 chr3 76679103 76679521 -150845057 - L3 LINE CR1 -274 1303 881 352 282 105 87 chr3 76681321 76681817 -150842761 - HAL1b LINE L1 -785 563 59 22 0 0 0 chr3 76683500 76683522 -150841056 + AT_rich Low_complexity Low_complexity 1 22 0 591 226 156 66 chr3 76683712 76684136 -150840442 - LTR37B LTR ERV1 0 468 7 3145 115 88 8 chr3 76687085 76687573 -150837005 - MER1A DNA MER1_type 0 527 1 351 211 60 17 chr3 76687614 76687729 -150836849 + LTR37B LTR ERV1 302 467 -1 1903 151 6 10 chr3 76689378 76689690 -150834888 + AluJb SINE Alu 1 311 -1 927 275 60 18 chr3 76693078 76693409 -150831169 - LTR16C LTR ERVL 0 491 147 242 289 33 11 chr3 76693665 76693755 -150830823 - MER69 DNA AcHobo -2307 219 128 339 187 22 88 chr3 76694078 76694169 -150830409 - MER20 DNA MER1_type -3 216 132 299 316 44 15 chr3 76694184 76694320 -150830258 - LTR16C LTR ERVL 0 491 352 624 127 0 27 chr3 76695096 76695206 -150829372 + AluY SINE Alu 200 306 -5 312 233 89 20 chr3 76695427 76695573 -150829005 - MER103 DNA DNA -9 157 2 1278 248 37 0 chr3 76695788 76696086 -150828492 + AluJo SINE Alu 1 309 -3 233 344 136 0 chr3 76696157 76696282 -150828296 + MIR SINE MIR 107 248 -14 197 289 112 62 chr3 76696944 76697186 -150827392 - L2 LINE L2 0 3313 3060 1700 156 156 11 chr3 76697352 76697723 -150826855 + MSTA LTR MaLR 4 428 0 1908 138 7 3 chr3 76697817 76698128 -150826450 + AluSx SINE Alu 1 312 0 353 362 41 36 chr3 76698656 76698852 -150825726 + L2 LINE L2 3076 3272 0 201 121 0 0 chr3 76700003 76700036 -150824542 + (TG)n Simple_repeat Simple_repeat 2 34 0 303 256 13 0 chr3 76700045 76700123 -150824455 - ERVL LTR ERVL -3576 2188 2110 2170 67 0 0 chr3 76700193 76700475 -150824103 - L1PA7 LINE L1 0 6154 5873 2360 72 10 0 chr3 76700484 76700899 -150823679 + L1P3 LINE L1 5056 5474 -680 346 352 0 8 chr3 76700903 76701028 -150823550 - ERVL LTR ERVL -2982 2014 1891 332 291 17 60 chr3 76702968 76703085 -150821493 - L1MC4 LINE L1 -1166 6876 6765 2024 110 61 58 chr3 76703481 76703702 -150820876 + THE1B LTR MaLR 1 225 -139 976 104 0 13 chr3 76703702 76703856 -150820722 + L1PA8 LINE L1 6021 6172 0 2024 110 61 58 chr3 76703856 76703997 -150820581 + THE1B LTR MaLR 225 364 0 2044 114 70 22 chr3 76704058 76704416 -150820162 - THE1C LTR MaLR 0 375 1 1056 246 57 92 chr3 76704485 76704530 -150820048 - LTR68 LTR ERV1 -169 571 526 1578 130 0 0 chr3 76704530 76704753 -150819825 - AluSg/x SINE Alu -24 288 66 1056 246 57 92 chr3 76704753 76705162 -150819416 - LTR68 LTR ERV1 -214 526 133 5099 226 36 10 chr3 76705162 76706483 -150818095 - L1 LINE L1 -1664 4482 3128 1887 257 71 23 chr3 76706805 76707875 -150816703 + L1MA9 LINE L1 3048 4169 -3396 4079 224 35 12 chr3 76707908 76709057 -150815521 + L1MA9 LINE L1 4285 5459 -2106 251 195 13 26 chr3 76709070 76709147 -150815431 + L1MA9 LINE L1 5753 5828 -1737 1686 140 0 22 chr3 76709147 76709418 -150815160 + AluSg1 SINE Alu 1 265 -44 524 150 0 0 chr3 76709418 76709498 -150815080 + AluSg/x SINE Alu 216 295 -14 3326 196 19 24 chr3 76709508 76709949 -150814629 + L1MA9 LINE L1 5822 6259 -1306 1159 234 159 14 chr3 76709949 76710295 -150814283 - MSTD LTR MaLR 0 396 1 3326 196 19 24 chr3 76710295 76710640 -150813938 + L1MA9 LINE L1 6259 6604 -961 534 261 95 36 chr3 76710740 76710962 -150813616 + L2 LINE L2 3078 3312 -1 206 164 14 41 chr3 76711276 76711349 -150813229 + (TA)n Simple_repeat Simple_repeat 1 71 0 22 0 0 0 chr3 76711467 76711489 -150813089 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr3 76711818 76711857 -150812721 + (TG)n Simple_repeat Simple_repeat 2 40 0 4902 180 9 9 chr3 76711975 76712868 -150811710 - Tigger1 DNA MER2_type -1525 893 1 1980 171 18 18 chr3 76713179 76713572 -150811006 + L1MA9 LINE L1 6673 7065 -666 985 218 79 20 chr3 76713572 76713919 -150810659 + MSTD LTR MaLR 1 396 0 1826 261 20 10 chr3 76713947 76714437 -150810141 + MSTD-int LTR MaLR 23 517 -1218 1680 141 121 62 chr3 76714437 76714841 -150809737 - MSTA LTR MaLR 0 428 1 2805 277 126 27 chr3 76714841 76715935 -150808643 + MSTD-int LTR MaLR 513 1714 -21 22 0 0 0 chr3 76715962 76715984 -150808594 + AT_rich Low_complexity Low_complexity 1 22 0 5259 180 27 30 chr3 76716160 76716748 -150807830 + L1PB2 LINE L1 4038 4627 -1524 937 57 0 0 chr3 76716748 76716871 -150807707 + L1PA5 LINE L1 6032 6154 0 5259 180 27 30 chr3 76716871 76717497 -150807081 + L1PB2 LINE L1 4627 5254 -897 2311 145 3 13 chr3 76717497 76717876 -150806702 - THE1C LTR MaLR 0 375 1 5259 180 27 30 chr3 76717876 76718426 -150806152 + L1PB2 LINE L1 5254 5795 -356 387 0 0 0 chr3 76718426 76718469 -150806109 + (TA)n Simple_repeat Simple_repeat 2 44 0 5259 180 27 30 chr3 76718469 76718823 -150805755 + L1PB2 LINE L1 5795 6149 -2 343 191 0 0 chr3 76718899 76718962 -150805616 + L1MA9 LINE L1 7136 7198 -533 993 232 56 36 chr3 76718965 76719267 -150805311 + L1MA9 LINE L1 7389 7696 -35 32 43 0 0 chr3 76719322 76719368 -150805210 + AT_rich Low_complexity Low_complexity 1 46 0 31 76 0 0 chr3 76719512 76719578 -150805000 + AT_rich Low_complexity Low_complexity 1 66 0 25 0 0 0 chr3 76719906 76719931 -150804647 + AT_rich Low_complexity Low_complexity 1 25 0 549 315 20 15 chr3 76720395 76720592 -150803986 + LTR40a LTR ERVL 313 510 -9 1048 258 132 57 chr3 76720906 76721430 -150803148 + HERVL40 LTR ERVL 935 1497 -4033 192 250 68 0 chr3 76721613 76721657 -150802921 + L2 LINE L2 3263 3309 -4 21 82 0 0 chr3 76723234 76723283 -150801295 + AT_rich Low_complexity Low_complexity 1 49 0 2149 116 0 0 chr3 76723375 76723667 -150800911 + AluY SINE Alu 1 292 -19 7509 257 125 33 chr3 76723763 76727015 -150797563 + L1M2b LINE L1 1 3869 -3339 7332 46 0 4 chr3 76727015 76728015 -150796563 + L1PA5 LINE L1 5159 6154 0 7509 257 125 33 chr3 76728015 76728193 -150796385 + L1M2b LINE L1 3869 4029 -3179 204 204 0 182 chr3 76728299 76728387 -150796191 + L2 LINE L2 3242 3313 0 258 132 29 15 chr3 76729270 76729338 -150795240 + (TA)n Simple_repeat Simple_repeat 1 69 0 295 327 62 0 chr3 76729841 76729954 -150794624 + L2 LINE L2 3145 3264 -8 1925 157 28 0 chr3 76729955 76730242 -150794336 + AluJb SINE Alu 2 296 -16 6219 217 43 11 chr3 76730457 76731399 -150793179 + L1 LINE L1 2714 3624 -2522 456 35 0 0 chr3 76731399 76731457 -150793121 + (CA)n Simple_repeat Simple_repeat 2 59 0 6219 217 43 11 chr3 76731457 76731482 -150793096 + L1 LINE L1 3624 3647 -2499 1877 149 149 11 chr3 76731482 76731858 -150792720 - MSTA LTR MaLR 0 428 1 6219 217 43 11 chr3 76731858 76732532 -150792046 + L1 LINE L1 3647 4409 -1737 794 266 115 57 chr3 76732743 76732876 -150791702 + MLT1D LTR MaLR 1 125 -380 2604 45 0 3 chr3 76732876 76733187 -150791391 - AluY SINE Alu -1 310 1 794 266 115 57 chr3 76733187 76733530 -150791048 + MLT1D LTR MaLR 125 505 0 235 271 43 71 chr3 76733535 76733675 -150790903 + L2 LINE L2 3066 3201 -112 21 0 0 0 chr3 76734187 76734208 -150790370 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr3 76734615 76734642 -150789936 + AT_rich Low_complexity Low_complexity 1 27 0 260 222 14 0 chr3 76734644 76734716 -150789862 + (CA)n Simple_repeat Simple_repeat 1 73 0 450 289 0 9 chr3 76735563 76735677 -150788901 - L2 LINE L2 -10 3303 3191 1122 256 62 20 chr3 76735737 76736042 -150788536 - MLT1A1 LTR MaLR 0 365 48 216 232 30 0 chr3 76737660 76737759 -150786819 + (TA)n Simple_repeat Simple_repeat 1 102 0 255 31 0 0 chr3 76737858 76737890 -150786688 + (TG)n Simple_repeat Simple_repeat 1 32 0 908 321 76 15 chr3 76737975 76738763 -150785815 - L1ME3A LINE L1 -319 5851 5016 322 287 84 56 chr3 76739042 76739363 -150785215 - L1ME3A LINE L1 -1606 4540 4211 324 224 40 26 chr3 76739458 76739534 -150785044 - MER91B DNA MER1_type -112 78 2 3302 163 54 0 chr3 76739804 76740376 -150784202 + LTR26 LTR ERV1 1 603 0 191 170 21 0 chr3 76740643 76740690 -150783888 + (TA)n Simple_repeat Simple_repeat 1 48 0 1002 285 51 31 chr3 76740806 76741160 -150783418 + MLT1A1 LTR MaLR 1 361 -4 1034 183 40 0 chr3 76741164 76741366 -150783212 + MLT1A1-int LTR MaLR 1 210 -1525 641 211 0 23 chr3 76741365 76741498 -150783080 + MLT-int LTR MaLR 1539 1668 -67 * 1231 190 6 52 chr3 76741599 76741925 -150782653 + L1 LINE L1 4490 4800 -1346 1969 159 141 5 chr3 76741925 76742302 -150782276 + MSTA LTR MaLR 1 428 0 3543 167 30 24 chr3 76742302 76742968 -150781610 + MSTA-int LTR MaLR 1 670 -981 359 374 0 23 chr3 76743099 76743230 -150781348 + L2 LINE L2 3137 3264 -8 396 141 26 0 chr3 76743560 76743638 -150780940 + MADE1 DNA Mariner 1 80 0 222 37 0 0 chr3 76744015 76744042 -150780536 + (TG)n Simple_repeat Simple_repeat 2 28 0 424 298 0 0 chr3 76744548 76744662 -150779916 - L2 LINE L2 0 3313 3200 789 226 53 5 chr3 76744678 76744868 -150779710 + MER3 DNA MER1_type 7 205 -4 2169 131 0 0 chr3 76745859 76746157 -150778421 - AluSx SINE Alu -14 298 1 234 193 0 0 chr3 76746631 76746688 -150777890 + (TA)n Simple_repeat Simple_repeat 1 57 0 264 30 0 0 chr3 76746723 76746756 -150777822 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 1911 144 4 0 chr3 76746756 76747034 -150777544 - AluSx SINE Alu -33 279 1 394 257 93 70 chr3 76747418 76747675 -150776903 + L1MC5 LINE L1 7493 7755 -206 1770 108 61 0 chr3 76747880 76748158 -150776420 - L1PA11 LINE L1 -3 6171 5877 27 0 0 0 chr3 76749312 76749339 -150775239 + AT_rich Low_complexity Low_complexity 1 27 0 2479 70 0 6 chr3 76749744 76750056 -150774522 - AluY SINE Alu -1 310 1 1837 156 3 7 chr3 76750141 76750442 -150774136 - AluSx SINE Alu -12 300 1 279 0 0 0 chr3 76751321 76751352 -150773226 + (TC)n Simple_repeat Simple_repeat 2 32 0 298 325 98 12 chr3 76751405 76751568 -150773010 - MIR SINE MIR -58 204 28 313 277 0 12 chr3 76752054 76752137 -150772441 + GA-rich Low_complexity Low_complexity 3 84 0 311 60 20 0 chr3 76752162 76752212 -150772366 - L1PB1 LINE L1 0 6151 6101 1897 158 0 7 chr3 76752626 76752930 -150771648 - AluSx SINE Alu -10 302 1 690 200 93 0 chr3 76753383 76753533 -150771045 - MER5A DNA MER1_type -22 167 4 22 0 0 0 chr3 76754668 76754690 -150769888 + AT_rich Low_complexity Low_complexity 1 22 0 327 226 20 29 chr3 76754707 76754809 -150769769 - MLT1J1 LTR MaLR -6 440 340 330 329 64 0 chr3 76754935 76755075 -150769503 + Charlie1 DNA MER1_type 43 191 -2570 840 180 97 29 chr3 76755080 76755358 -150769220 + Charlie1 DNA MER1_type 2464 2760 -1 316 400 21 0 chr3 76755852 76755997 -150768581 + MER91A DNA MER1_type 9 156 -40 221 345 0 0 chr3 76756024 76756079 -150768499 + MER91A DNA MER1_type 142 196 0 264 288 0 0 chr3 76756109 76756168 -150768410 + L2 LINE L2 3251 3309 -4 * 456 327 14 41 chr3 76756157 76756303 -150768275 + L3 LINE CR1 536 676 -901 2410 69 0 7 chr3 76756303 76756606 -150767972 + AluY SINE Alu 1 301 -10 456 327 14 41 chr3 76756606 76756679 -150767899 + L3 LINE CR1 676 749 -828 282 137 20 0 chr3 76757380 76757431 -150767147 - MADE1 DNA Mariner -28 52 1 22 35 0 0 chr3 76757681 76757710 -150766868 + AT_rich Low_complexity Low_complexity 1 29 0 2179 111 10 7 chr3 76758031 76758328 -150766250 - AluSc SINE Alu -11 298 1 196 148 0 56 chr3 76759284 76759338 -150765240 + (TATATG)n Simple_repeat Simple_repeat 2 52 0 389 213 0 43 chr3 76759370 76759464 -150765114 - L1MC4 LINE L1 -1339 6703 6614 2107 199 27 5 chr3 76759474 76759875 -150764703 - MSTB LTR MaLR -15 411 2 4373 200 5 3 chr3 76759876 76760650 -150763928 - MSTB-int LTR MaLR 0 1651 876 2939 192 31 7 chr3 76760636 76761219 -150763359 - MSTB-int LTR MaLR -1029 622 26 * 2032 209 24 5 chr3 76761259 76761676 -150762902 - MSTB LTR MaLR 0 426 2 1793 199 9 107 chr3 76761919 76762478 -150762100 - MLT1D LTR MaLR -1 504 1 1420 131 5 0 chr3 76762612 76762810 -150761768 + AluSg SINE Alu 1 199 -111 1082 274 62 79 chr3 76762830 76763301 -150761277 + MLT1F1 LTR MaLR 105 567 0 901 289 64 42 chr3 76763301 76764052 -150760526 + MLT1F1-int LTR MaLR 1 882 -489 5611 85 60 1 chr3 76764287 76765067 -150759511 + LTR12 LTR ERV1 1 826 0 433 191 32 0 chr3 76765270 76765364 -150759214 + MLT1F1 LTR MaLR 471 567 0 1497 79 116 14 chr3 76765426 76765641 -150758937 - LTR12 LTR ERV1 -413 301 65 4895 86 11 37 chr3 76765836 76766542 -150758036 - LTR12 LTR ERV1 0 688 1 24 0 0 0 chr3 76766638 76766662 -150757916 + AT_rich Low_complexity Low_complexity 1 24 0 2322 82 0 0 chr3 76767386 76767680 -150756898 - AluY SINE Alu -17 294 1 1769 193 22 14 chr3 76767737 76768099 -150756479 - MLT1A1 LTR MaLR 0 365 1 21 82 0 0 chr3 76768650 76768699 -150755879 + AT_rich Low_complexity Low_complexity 1 49 0 446 350 176 31 chr3 76769019 76769757 -150754821 - L2 LINE L2 -400 2914 2070 290 378 32 27 chr3 76769799 76769987 -150754591 + MIR SINE MIR 5 193 -69 304 360 103 26 chr3 76770108 76770572 -150754006 - L2 LINE L2 -1405 1909 1410 3019 103 19 0 chr3 76770691 76771170 -150753408 + MLT2A1 LTR ERVL 1 444 0 1677 295 134 63 chr3 76771172 76772587 -150751991 - L2 LINE L2 -108 3205 1606 371 372 80 33 chr3 76772615 76773193 -150751385 - L2 LINE L2 -1921 1393 789 415 255 189 46 chr3 76773533 76773686 -150750892 - MER5B DNA MER1_type -2 176 2 279 286 0 39 chr3 76774014 76774091 -150750487 + L2 LINE L2 3193 3266 -6 234 0 0 0 chr3 76776345 76776371 -150748207 + (T)n Simple_repeat Simple_repeat 1 26 0 1011 231 73 70 chr3 76777045 76777349 -150747229 + MER39 LTR ERV1 67 369 -338 2350 61 0 3 chr3 76777349 76777642 -150746936 + AluY SINE Alu 1 292 -19 1011 231 73 70 chr3 76777642 76777677 -150746901 + MER39 LTR ERV1 369 402 -305 2418 195 20 102 chr3 76777677 76778430 -150746148 + LTR8 LTR ERV1 1 691 0 1011 231 73 70 chr3 76778430 76778541 -150746037 + MER39 LTR ERV1 402 682 -25 362 343 48 80 chr3 76778868 76779180 -150745398 - L2 LINE L2 -2 3270 2969 21 36 0 0 chr3 76779362 76779390 -150745188 + AT_rich Low_complexity Low_complexity 1 28 0 2218 85 3 25 chr3 76779390 76779707 -150744871 - AluY SINE Alu -1 310 1 559 316 90 48 chr3 76779749 76780227 -150744351 - L2 LINE L2 -614 2700 2203 390 350 60 20 chr3 76780243 76780443 -150744135 - MIR SINE MIR -51 211 4 587 342 113 19 chr3 76780500 76780968 -150743610 - L2 LINE L2 -1173 2141 1630 348 392 15 0 chr3 76781000 76781130 -150743448 + L2 LINE L2 2017 2148 -1166 1030 313 48 7 chr3 76781136 76781555 -150743023 + L2 LINE L2 2291 2726 -588 372 267 15 15 chr3 76781556 76781687 -150742891 - L1ME2 LINE L1 0 6164 6034 366 271 61 77 chr3 76784088 76784269 -150740309 - MER5B DNA MER1_type 0 178 1 294 73 0 0 chr3 76784341 76784382 -150740196 + (TATG)n Simple_repeat Simple_repeat 4 44 0 363 247 39 110 chr3 76785550 76785704 -150738874 - MIR SINE MIR -11 251 109 531 237 0 8 chr3 76785805 76785923 -150738655 + MLT1C LTR MaLR 351 467 0 232 241 17 0 chr3 76785998 76786056 -150738522 + CT-rich Low_complexity Low_complexity 3 61 0 342 0 0 0 chr3 76787347 76787385 -150737193 + (TG)n Simple_repeat Simple_repeat 2 39 0 256 350 40 0 chr3 76787450 76787550 -150737028 + L2 LINE L2 2164 2267 -1047 542 295 35 0 chr3 76787585 76787610 -150736968 + MLT2C1 LTR ERVL 23 46 -351 568 187 8 32 chr3 76787610 76787733 -150736845 + MLT1E3 LTR MaLR 69 188 -436 542 295 35 0 chr3 76787733 76787758 -150736820 + MLT2C1 LTR ERVL 46 201 -196 9575 235 41 37 chr3 76787888 76789556 -150735022 - L1 LINE L1 -3299 3868 2207 2256 100 0 0 chr3 76789556 76789855 -150734723 - AluSc SINE Alu -10 299 1 9575 235 41 37 chr3 76789855 76792416 -150732162 - L1 LINE L1 -4960 2207 1 305 339 78 60 chr3 76792951 76793364 -150731214 + L2 LINE L2 2222 2641 -673 443 282 77 62 chr3 76793885 76794080 -150730498 + MLT1J1 LTR MaLR 1 198 -248 833 154 0 0 chr3 76795481 76795653 -150728925 + FLAM_C SINE Alu 7 178 0 889 191 6 0 chr3 76795654 76795838 -150728740 + AluJo SINE Alu 120 304 0 453 210 32 48 chr3 76796245 76796369 -150728209 - FLAM_A SINE Alu -11 122 1 2488 65 0 3 chr3 76797145 76797455 -150727123 + AluY SINE Alu 1 309 -2 695 215 38 43 chr3 76797481 76797690 -150726888 + MER3 DNA MER1_type 2 209 0 225 200 22 0 chr3 76797663 76797708 -150726870 - MER3 DNA MER1_type -135 74 29 * 196 319 28 60 chr3 76800418 76800600 -150723978 + L2 LINE L2 2479 2654 -660 26 55 0 41 chr3 76802038 76802111 -150722467 + AT_rich Low_complexity Low_complexity 1 70 0 4656 175 37 8 chr3 76802111 76803047 -150721531 - L1MA9 LINE L1 -10 6302 5339 270 0 0 0 chr3 76803572 76803602 -150720976 + (T)n Simple_repeat Simple_repeat 1 30 0 24 0 0 0 chr3 76804537 76804561 -150720017 + AT_rich Low_complexity Low_complexity 1 24 0 1225 73 11 6 chr3 76804897 76804971 -150719607 + (TTTC)n Simple_repeat Simple_repeat 1 253 0 1225 73 11 6 chr3 76804971 76805149 -150719429 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 731 162 19 10 chr3 76805616 76805828 -150718750 + CT-rich Low_complexity Low_complexity 1 214 0 23 33 0 0 chr3 76806240 76806270 -150718308 + AT_rich Low_complexity Low_complexity 1 30 0 327 325 47 18 chr3 76807447 76807616 -150716962 + L2 LINE L2 2684 2857 -457 236 178 0 0 chr3 76808551 76808596 -150715982 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 231 308 26 17 chr3 76808932 76809049 -150715529 - MER70B LTR ERVL -2 576 459 195 41 61 61 chr3 76809522 76809571 -150715007 + T-rich Low_complexity Low_complexity 3 51 0 304 341 105 27 chr3 76809587 76809845 -150714733 + L3 LINE CR1 1292 1569 -8 1135 302 43 30 chr3 76810726 76811265 -150713313 + L1MC5 LINE L1 5417 5962 -1846 1413 242 105 70 chr3 76811880 76812873 -150711705 + L1MC5 LINE L1 6725 7752 -209 244 208 19 0 chr3 76812918 76812971 -150711607 - LTR16C LTR ERVL 0 491 438 262 226 75 66 chr3 76813283 76813389 -150711189 + L1MC5 LINE L1 7803 7909 -52 192 77 0 0 chr3 76813768 76813794 -150710784 + (GAAAA)n Simple_repeat Simple_repeat 1 26 0 358 309 64 19 chr3 76814100 76814150 -150710428 + MIR SINE MIR 25 71 -185 2408 72 0 0 chr3 76814150 76814443 -150710135 - AluSc SINE Alu -16 293 1 358 309 64 19 chr3 76814443 76814571 -150710007 + MIR SINE MIR 71 198 -58 210 135 0 0 chr3 76814923 76814950 -150709628 + (TTTC)n Simple_repeat Simple_repeat 3 32 -7 609 105 114 18 chr3 76814950 76815064 -150709514 - L1PA13 LINE L1 0 6163 6039 210 135 0 0 chr3 76815064 76815073 -150709505 + (TTTC)n Simple_repeat Simple_repeat 31 39 0 678 140 0 1 chr3 76815272 76815390 -150709188 - MLT1D LTR MaLR 0 505 351 943 207 17 0 chr3 76815396 76815575 -150709003 - MSTD LTR MaLR 0 396 215 296 242 0 33 chr3 76820156 76820247 -150704331 + CT-rich Low_complexity Low_complexity 3 90 0 232 331 71 19 chr3 76820660 76820814 -150703764 + MER5A DNA MER1_type 27 188 -1 30 45 0 0 chr3 76820950 76820994 -150703584 + AT_rich Low_complexity Low_complexity 1 44 0 347 239 7 17 chr3 76821636 76821776 -150702802 + MLT1J2 LTR MaLR 37 135 -315 25 51 0 0 chr3 76822362 76822401 -150702177 + AT_rich Low_complexity Low_complexity 1 39 0 240 35 0 0 chr3 76823352 76823381 -150701197 + (TG)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr3 76823648 76823671 -150700907 + AT_rich Low_complexity Low_complexity 1 23 0 227 350 0 0 chr3 76827355 76827415 -150697163 + L2 LINE L2 3211 3270 -2 25 0 0 0 chr3 76827542 76827567 -150697011 + AT_rich Low_complexity Low_complexity 1 25 0 189 107 0 0 chr3 76827882 76827910 -150696668 + L2 LINE L2 3278 3305 -8 197 65 32 0 chr3 76827995 76828026 -150696552 + (GA)n Simple_repeat Simple_repeat 2 33 0 306 0 0 0 chr3 76829324 76829358 -150695220 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 226 298 0 0 chr3 76829767 76829851 -150694727 - L1MC4 LINE L1 -1346 6696 6613 309 135 0 0 chr3 76829851 76829903 -150694675 + (TA)n Simple_repeat Simple_repeat 1 52 0 210 287 74 25 chr3 76830751 76830873 -150693705 + L2 LINE L2 3145 3272 0 2162 109 0 3 chr3 76830941 76831235 -150693343 - AluSg SINE Alu -17 293 1 337 20 20 20 chr3 76831285 76831336 -150693242 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 2209 71 0 4 chr3 76831338 76831618 -150692960 - AluY SINE Alu -32 279 1 408 283 38 9 chr3 76831618 76831724 -150692854 - L2 LINE L2 -7 3306 3198 466 343 68 13 chr3 76832047 76832412 -150692166 - LTR16A LTR ERVL -5 445 1 576 356 54 29 chr3 76832556 76833134 -150691444 - HERVL LTR ERVL -324 5330 4739 289 280 14 0 chr3 76833189 76833280 -150691298 - HERVL LTR ERVL -880 4605 4536 355 167 17 0 chr3 76833398 76833458 -150691120 - MER45 DNA AcHobo -1 1580 1520 810 327 91 29 chr3 76833528 76834317 -150690261 - HERVL LTR ERVL -1213 4272 3574 2017 192 137 24 chr3 76834367 76834399 -150690179 - MLT2B1 LTR ERVL -9 511 484 516 32 0 0 chr3 76834399 76834461 -150690117 + (GA)n Simple_repeat Simple_repeat 1 62 0 2017 192 137 24 chr3 76834461 76834674 -150689904 - MLT2B1 LTR ERVL -36 484 297 2181 148 11 14 chr3 76834674 76835039 -150689539 + THE1B LTR MaLR 1 364 0 2017 192 137 24 chr3 76835039 76835251 -150689327 - MLT2B1 LTR ERVL -223 297 1 1799 341 85 16 chr3 76835293 76836595 -150687983 - HERVL LTR ERVL -2310 3454 2013 2488 57 0 0 chr3 76836770 76837066 -150687512 - AluY SINE Alu -15 296 1 192 356 39 113 chr3 76837607 76837944 -150686634 - L2 LINE L2 -45 3227 2916 239 334 36 27 chr3 76840049 76840195 -150684383 + MIR SINE MIR 48 192 -16 766 182 68 6 chr3 76840800 76840976 -150683602 + MER53 DNA DNA 1 187 -2 21 36 0 0 chr3 76841514 76841542 -150683036 + AT_rich Low_complexity Low_complexity 1 28 0 800 225 10 3 chr3 76841555 76841854 -150682724 + GA-rich Low_complexity Low_complexity 1 301 0 21 0 0 0 chr3 76843137 76843158 -150681420 + AT_rich Low_complexity Low_complexity 1 21 0 504 207 80 59 chr3 76846026 76846216 -150678362 - MER20 DNA MER1_type -28 191 1 196 253 11 110 chr3 76847174 76847265 -150677313 - MIR3 SINE MIR -45 163 82 5289 164 99 11 chr3 76848630 76849425 -150675153 + Tigger3b DNA MER2_type 2 928 -2100 203 61 30 0 chr3 76849425 76849458 -150675120 + (CTCA)n Simple_repeat Simple_repeat 1 34 0 5289 164 99 11 chr3 76849458 76849791 -150674787 + Tigger3b DNA MER2_type 928 1230 -1 1869 152 29 45 chr3 76849847 76850228 -150674350 + THE1C LTR MaLR 1 375 0 504 347 55 22 chr3 76850629 76850903 -150673675 + LTR16C LTR ERVL 74 356 -135 1683 173 42 3 chr3 76850913 76851219 -150673359 + MLT2D LTR ERVL 1 318 -96 186 43 0 0 chr3 76851491 76851514 -150673064 + (CA)n Simple_repeat Simple_repeat 1 23 0 184 292 101 45 chr3 76851706 76851795 -150672783 + L2 LINE L2 3199 3292 -21 1988 122 28 3 chr3 76851860 76852148 -150672430 + AluSg SINE Alu 1 295 -15 269 233 14 0 chr3 76852700 76852773 -150671805 + (TA)n Simple_repeat Simple_repeat 1 74 0 196 213 33 33 chr3 76852857 76852918 -150671660 + MIR SINE MIR 137 197 -65 22 88 0 0 chr3 76854564 76854621 -150669957 + AT_rich Low_complexity Low_complexity 1 57 0 1294 260 17 39 chr3 76856892 76857403 -150667175 + L1ME2 LINE L1 5667 6312 0 197 297 88 11 chr3 76857410 76857501 -150667077 - MIR SINE MIR -70 192 95 2565 52 0 3 chr3 76858091 76858420 -150666158 - L1PA4 LINE L1 0 6155 5828 42 36 0 0 chr3 76860882 76860938 -150663640 + AT_rich Low_complexity Low_complexity 1 56 0 253 198 135 42 chr3 76862743 76862839 -150661739 + LTR68 LTR ERV1 189 293 -447 723 187 90 18 chr3 76863079 76863227 -150661351 - L1MA9 LINE L1 0 6312 6149 435 38 0 0 chr3 76863227 76863280 -150661298 + (TG)n Simple_repeat Simple_repeat 1 53 0 723 187 90 18 chr3 76863280 76863297 -150661281 - L1MA9 LINE L1 -163 6149 6135 2090 118 3 3 chr3 76863671 76863967 -150660611 + AluSc SINE Alu 1 296 -13 1666 216 102 100 chr3 76863988 76864686 -150659892 + L1ME2 LINE L1 5456 6154 -10 685 283 45 0 chr3 76865341 76865539 -150659039 + MER58A DNA MER1_type 2 208 -16 219 36 0 0 chr3 76865548 76865576 -150659002 + (CAA)n Simple_repeat Simple_repeat 2 29 0 32 0 0 0 chr3 76865624 76865656 -150658922 + AT_rich Low_complexity Low_complexity 1 32 0 237 363 57 36 chr3 76866317 76866510 -150658068 + MIR3 SINE MIR 3 199 -9 833 255 181 52 chr3 76866770 76867372 -150657206 + L2 LINE L2 2646 3309 -4 185 304 88 49 chr3 76867605 76867707 -150656871 - L2 LINE L2 -35 3278 3173 29 0 0 0 chr3 76869149 76869178 -150655400 + AT_rich Low_complexity Low_complexity 1 29 0 243 297 31 0 chr3 76869361 76869425 -150655153 + L2 LINE L2 3206 3271 -1 359 287 32 0 chr3 76870283 76870377 -150654201 - MER91A DNA MER1_type -87 109 13 1653 124 4 0 chr3 76870573 76870823 -150653755 - LTR24B LTR ERV1 -5 571 321 2497 126 18 15 chr3 76870839 76871237 -150653341 - LTR24B LTR ERV1 -177 399 1 393 282 24 16 chr3 76871242 76871366 -150653212 - MIR SINE MIR -89 173 49 267 215 125 21 chr3 76871433 76871577 -150653001 - L1ME4a LINE L1 -1 6120 5962 365 62 0 0 chr3 76871676 76871724 -150652854 + U5 snRNA snRNA 1 48 -68 315 281 51 75 chr3 76871887 76872101 -150652477 - L1ME4a LINE L1 -515 5606 5388 369 86 0 0 chr3 76872101 76872159 -150652419 + (TA)n Simple_repeat Simple_repeat 2 59 0 2288 106 0 0 chr3 76872159 76872460 -150652118 - AluSc SINE Alu -8 301 1 315 281 51 75 chr3 76872460 76872497 -150652081 - L1ME4a LINE L1 -731 5390 5360 1972 151 0 0 chr3 76873623 76873922 -150650656 + AluSx SINE Alu 5 303 -9 2181 125 0 10 chr3 76875010 76875322 -150649256 + AluSx SINE Alu 1 309 -3 526 260 68 0 chr3 76875410 76875556 -150649022 - MIR SINE MIR -26 236 81 687 244 28 96 chr3 76875737 76876042 -150648536 + L1MB7 LINE L1 5896 6182 -2 603 265 8 107 chr3 76877300 76877459 -150647119 + MIR SINE MIR 3 129 -133 2008 104 42 7 chr3 76877459 76877747 -150646831 + AluSx SINE Alu 1 298 -14 603 265 8 107 chr3 76877747 76877840 -150646738 + MIR SINE MIR 129 230 -32 221 292 231 0 chr3 76877966 76878096 -150646482 - L2 LINE L2 -552 2762 2603 245 307 80 23 chr3 76880402 76880490 -150644088 - L2 LINE L2 -6 3266 3174 2994 266 70 72 chr3 76880578 76880664 -150643914 + L1ME1 LINE L1 35 120 -6276 1291 224 110 20 chr3 76880664 76881119 -150643459 + LTR54B LTR ERV1 1 496 -2 2994 266 70 72 chr3 76881119 76882457 -150642121 + L1ME1 LINE L1 120 1459 -4937 2270 92 20 0 chr3 76882457 76882760 -150641818 + AluSc SINE Alu 1 309 0 2994 266 70 72 chr3 76882760 76883041 -150641537 + L1ME1 LINE L1 1459 1739 -4657 36 23 0 0 chr3 76883043 76883086 -150641492 + AT_rich Low_complexity Low_complexity 1 43 0 1996 138 3 0 chr3 76883112 76883402 -150641176 + AluSx SINE Alu 1 291 -21 346 230 88 18 chr3 76883435 76883548 -150641030 + L1M4 LINE L1 5082 5202 -944 260 255 87 27 chr3 76883533 76883682 -150640896 + L1ME1 LINE L1 1770 1927 -4469 * 2012 256 86 19 chr3 76883672 76884561 -150640017 + L1ME1 LINE L1 4804 5792 -443 611 180 58 7 chr3 76884561 76884700 -150639878 + L1MB1 LINE L1 6023 6168 0 2012 256 86 19 chr3 76884700 76885095 -150639483 + L1ME1 LINE L1 5792 6159 -76 186 167 0 0 chr3 76885095 76885131 -150639447 + (TA)n Simple_repeat Simple_repeat 2 37 0 836 118 8 0 chr3 76885197 76885324 -150639254 - L1MA1 LINE L1 -8 6294 6167 3874 91 8 7 chr3 76886159 76886715 -150637863 + MER41A LTR ERV1 1 554 0 3958 144 3 2 chr3 76887784 76888402 -150636176 - Tigger1 DNA MER2_type 0 2418 1800 294 29 0 0 chr3 76888405 76888440 -150636138 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 8015 139 33 15 chr3 76888441 76888588 -150635990 - Tigger1 DNA MER2_type -813 1605 1462 2198 62 3 28 chr3 76888588 76888914 -150635664 + AluY SINE Alu 1 319 0 8015 139 33 15 chr3 76888914 76890131 -150634447 - Tigger1 DNA MER2_type -956 1462 215 1237 141 8 50 chr3 76890243 76890484 -150634094 - Tigger1 DNA MER2_type -2187 231 1 1173 238 0 4 chr3 76890669 76890909 -150633669 + MER8 DNA MER2_type 1 239 0 225 83 0 0 chr3 76891694 76891730 -150632848 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 1543 183 42 0 chr3 76892157 76892292 -150632286 - AluSx SINE Alu -39 273 145 185 0 40 0 chr3 76892292 76892317 -150632261 + (TTTG)n Simple_repeat Simple_repeat 4 29 0 1543 183 42 0 chr3 76892317 76892443 -150632135 - AluSx SINE Alu -167 145 1 22 35 0 0 chr3 76893090 76893119 -150631459 + AT_rich Low_complexity Low_complexity 1 29 0 247 273 0 0 chr3 76893646 76893701 -150630877 + (CATA)n Simple_repeat Simple_repeat 2 56 0 460 307 147 33 chr3 76895034 76895340 -150629238 - L2 LINE L2 -49 3264 2924 29 47 0 0 chr3 76895435 76895478 -150629100 + AT_rich Low_complexity Low_complexity 1 43 0 829 293 24 24 chr3 76895759 76896012 -150628566 + MLT2E LTR ERVL 19 271 -357 685 281 50 5 chr3 76896048 76896269 -150628309 + MLT2E LTR ERVL 359 589 -39 506 66 0 13 chr3 76896315 76896391 -150628187 + (TC)n Simple_repeat Simple_repeat 1 75 0 2744 13 0 0 chr3 76896812 76897116 -150627462 + AluYa5 SINE Alu 1 304 -7 21 0 0 0 chr3 76897382 76897403 -150627175 + AT_rich Low_complexity Low_complexity 1 21 0 307 371 141 36 chr3 76897976 76899215 -150625363 - L2 LINE L2 -193 3079 1706 1961 122 14 14 chr3 76899275 76899562 -150625016 - AluSx SINE Alu -13 299 13 381 331 38 8 chr3 76901009 76901142 -150623436 - MIR SINE MIR -56 152 16 599 280 0 42 chr3 76901157 76901371 -150623207 + MER3 DNA MER1_type 5 209 0 2347 106 0 0 chr3 76901644 76901998 -150622580 + AluSx SINE Alu 1 354 0 438 246 18 66 chr3 76903846 76904013 -150620565 - L3 LINE CR1 -284 1293 1135 245 316 53 32 chr3 76904018 76904208 -150620370 - L3 LINE CR1 -581 996 803 24 0 0 0 chr3 76904685 76904709 -150619869 + AT_rich Low_complexity Low_complexity 1 24 0 2454 47 0 28 chr3 76904859 76905177 -150619401 + AluY SINE Alu 1 309 -2 333 47 0 0 chr3 76906786 76906829 -150617749 + (TG)n Simple_repeat Simple_repeat 2 44 0 23 0 0 0 chr3 76907724 76907747 -150616831 + AT_rich Low_complexity Low_complexity 1 23 0 1073 116 26 7 chr3 76907748 76907903 -150616675 - AluSq SINE Alu -30 283 126 1378 254 26 11 chr3 76908224 76908575 -150616003 + MLT1A1 LTR MaLR 10 365 0 3581 294 138 50 chr3 76908956 76911098 -150613480 - L2 LINE L2 -380 2934 605 409 55 0 102 chr3 76911099 76911226 -150613352 + (GGAA)n Simple_repeat Simple_repeat 4 117 0 872 219 24 3 chr3 76911242 76911535 -150613043 + GA-rich Low_complexity Low_complexity 1 299 0 1174 211 38 13 chr3 76911663 76911973 -150612605 - MER33 DNA MER1_type -9 315 1 848 317 52 16 chr3 76912023 76912386 -150612192 - L2 LINE L2 -2902 412 37 2257 123 0 0 chr3 76912683 76912993 -150611585 + AluSg SINE Alu 1 310 0 2628 111 5 0 chr3 76913714 76914083 -150610495 - THE1C LTR MaLR -4 371 1 2683 35 0 10 chr3 76915671 76915985 -150608593 - AluY SINE Alu 0 311 1 206 61 0 30 chr3 76916486 76916519 -150608059 + (GA)n Simple_repeat Simple_repeat 1 32 0 351 0 0 0 chr3 76916650 76916689 -150607889 + (CA)n Simple_repeat Simple_repeat 2 40 0 304 221 116 23 chr3 76916878 76916964 -150607614 - MIR3 SINE MIR -30 178 85 216 320 13 13 chr3 76917013 76917088 -150607490 + L3 LINE CR1 922 996 -581 2927 171 8 6 chr3 76917367 76917894 -150606684 - L1P LINE L1 -2157 3989 3462 229 130 87 0 chr3 76917892 76917938 -150606640 + L1PA13 LINE L1 6110 6159 -4 * 21 36 0 0 chr3 76917938 76917966 -150606612 + AT_rich Low_complexity Low_complexity 1 28 0 238 209 78 43 chr3 76917967 76918082 -150606496 + HAL1b LINE L1 691 809 -539 195 42 0 0 chr3 76918877 76918901 -150605677 + (TTTTG)n Simple_repeat Simple_repeat 5 28 0 2098 123 0 0 chr3 76919734 76920027 -150604551 - AluSx SINE Alu -19 293 1 279 0 0 0 chr3 76920169 76920200 -150604378 + (CA)n Simple_repeat Simple_repeat 2 32 0 200 316 63 32 chr3 76921278 76921373 -150603205 + MIR SINE MIR 42 139 -69 500 293 25 13 chr3 76922272 76922429 -150602149 - MIR SINE MIR -72 190 32 21 0 0 0 chr3 76922855 76922876 -150601702 + AT_rich Low_complexity Low_complexity 1 21 0 616 159 23 0 chr3 76923313 76923445 -150601133 + GA-rich Low_complexity Low_complexity 3 137 0 1857 158 22 3 chr3 76925539 76925861 -150598717 - L1PB4 LINE L1 -6 6150 5823 2048 120 13 0 chr3 76926551 76926851 -150597727 + AluSx SINE Alu 1 304 -8 213 154 0 0 chr3 76926854 76926893 -150597685 + GA-rich Low_complexity Low_complexity 4 42 0 2821 112 32 13 chr3 76926894 76927359 -150597219 + L1MA1 LINE L1 5817 6290 -12 213 94 0 0 chr3 76927372 76927404 -150597174 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 423 0 0 0 chr3 76927564 76927611 -150596967 + (TG)n Simple_repeat Simple_repeat 1 47 0 264 323 136 83 chr3 76927754 76928441 -150596137 - L2 LINE L2 -557 2757 2007 498 86 0 0 chr3 76928441 76928511 -150596067 + L1MA1 LINE L1 6228 6297 -5 264 323 136 83 chr3 76928511 76928759 -150595819 - L2 LINE L2 -1307 2007 1773 4816 50 2 0 chr3 76930054 76930640 -150593938 - LTR14C LTR ERVK 0 587 1 345 381 68 16 chr3 76930858 76931110 -150593468 - L1MEc LINE L1 -6031 365 101 27 0 0 0 chr3 76931330 76931357 -150593221 + AT_rich Low_complexity Low_complexity 1 27 0 207 0 0 0 chr3 76933994 76934017 -150590561 + (TTG)n Simple_repeat Simple_repeat 2 24 0 29 28 0 0 chr3 76935026 76935062 -150589516 + AT_rich Low_complexity Low_complexity 1 36 0 27 0 0 0 chr3 76935156 76935183 -150589395 + AT_rich Low_complexity Low_complexity 1 27 0 300 143 36 83 chr3 76935332 76935416 -150589162 + L1MC4 LINE L1 6624 6703 -1339 21 0 0 0 chr3 76935729 76935750 -150588828 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 76935880 76935902 -150588676 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr3 76935934 76935962 -150588616 + AT_rich Low_complexity Low_complexity 1 28 0 184 282 39 39 chr3 76936624 76936727 -150587851 - L2 LINE L2 -61 3252 3150 575 284 66 78 chr3 76936776 76937096 -150587482 - L2 LINE L2 -7 3306 2991 181 419 11 0 chr3 76937130 76937223 -150587355 - L2 LINE L2 -396 2917 2824 1142 269 181 15 chr3 76937283 76937359 -150587219 - L2 LINE L2 -498 2816 2754 1789 149 58 28 chr3 76937359 76937721 -150586857 + THE1C LTR MaLR 1 373 -2 1142 269 181 15 chr3 76937721 76938184 -150586394 - L2 LINE L2 -560 2754 2187 305 309 64 55 chr3 76941203 76941423 -150583155 + L1ME4a LINE L1 5837 6058 -63 554 148 37 9 chr3 76941427 76941535 -150583043 + L1ME1 LINE L1 5765 5875 -291 298 221 180 16 chr3 76942022 76942144 -150582434 + L1MC4a LINE L1 7667 7808 0 22 70 0 0 chr3 76942144 76942187 -150582391 + AT_rich Low_complexity Low_complexity 1 43 0 749 286 42 23 chr3 76942187 76942492 -150582086 + L1ME1 LINE L1 5863 6334 0 2300 57 40 7 chr3 76942499 76942800 -150581778 + AluY SINE Alu 1 311 0 426 311 90 64 chr3 76942800 76943157 -150581421 + L1MC4a LINE L1 5637 6002 -1806 551 327 26 34 chr3 76943239 76943505 -150581073 + MLT1J LTR MaLR 8 271 -240 1163 119 0 0 chr3 76943575 76943734 -150580844 - AluSg/x SINE Alu -16 296 138 31 0 0 0 chr3 76943867 76943898 -150580680 + AT_rich Low_complexity Low_complexity 1 31 0 1258 197 78 62 chr3 76944861 76945231 -150579347 + MER39 LTR ERV1 305 680 -27 1533 124 14 0 chr3 76946129 76946347 -150578231 + AluSx SINE Alu 1 221 -91 2223 81 7 3 chr3 76946939 76947267 -150577311 + AluSp SINE Alu 1 329 0 771 230 79 18 chr3 76948507 76948785 -150575793 - LTR37A LTR ERV1 -3 423 129 234 0 0 0 chr3 76951081 76951107 -150573471 + (T)n Simple_repeat Simple_repeat 1 26 0 660 304 58 5 chr3 76951534 76951758 -150572820 + MLT1H LTR MaLR 313 548 -1 658 227 8 0 chr3 76951915 76952034 -150572544 + FLAM_C SINE Alu 2 121 -12 2898 87 37 16 chr3 76952497 76952879 -150571699 + MLT2A1 LTR ERVL 1 395 -49 276 30 0 0 chr3 76952879 76952912 -150571666 + (TG)n Simple_repeat Simple_repeat 2 34 0 2898 87 37 16 chr3 76952912 76952964 -150571614 + MLT2A1 LTR ERVL 395 444 0 584 209 16 82 chr3 76953059 76953241 -150571337 + LTR41 LTR ERVL 9 178 -595 2077 110 7 7 chr3 76953254 76953554 -150571024 + AluSx SINE Alu 1 300 -12 284 292 0 0 chr3 76954225 76954297 -150570281 - LTR16A1 LTR ERVL -12 445 374 237 65 0 0 chr3 76955778 76955809 -150568769 + (CA)n Simple_repeat Simple_repeat 2 32 0 1589 259 52 38 chr3 76955831 76956450 -150568128 - L1ME3 LINE L1 -155 6007 5375 1833 166 3 10 chr3 76956450 76956740 -150567838 - AluSx SINE Alu -18 294 7 1589 259 52 38 chr3 76956740 76956828 -150567750 - L1ME3 LINE L1 -787 5375 5290 1592 237 19 31 chr3 76956835 76957257 -150567321 + MLT2B1 LTR ERVL 26 442 -78 8505 147 20 43 chr3 76957459 76959073 -150565505 + MSTA-int LTR MaLR 3 1580 0 1009 130 75 0 chr3 76959073 76959234 -150565344 + MSTA LTR MaLR 1 173 -255 534 176 0 0 chr3 76959239 76959330 -150565248 + AluJ/FLAM SINE Alu 11 101 -211 467 195 12 0 chr3 76959430 76959512 -150565066 - AluJ/FLAM SINE Alu -226 86 4 31 0 0 0 chr3 76959848 76959879 -150564699 + AT_rich Low_complexity Low_complexity 1 31 0 260 239 14 0 chr3 76960088 76960159 -150564419 + (TAA)n Simple_repeat Simple_repeat 3 74 0 819 124 7 41 chr3 76960201 76960281 -150564297 - MER2 DNA MER2_type -85 260 186 1708 164 158 11 chr3 76960281 76960654 -150563924 - MSTA LTR MaLR 0 428 1 819 124 7 41 chr3 76960654 76960718 -150563860 - MER2 DNA MER2_type -159 186 121 1063 258 75 0 chr3 76960718 76960985 -150563593 + AluJo SINE Alu 1 287 -15 515 261 46 0 chr3 76961015 76961145 -150563433 - MER2 DNA MER2_type -209 136 1 441 309 0 100 chr3 76961156 76961376 -150563202 - MIR SINE MIR -62 200 3 342 0 0 0 chr3 76961491 76961529 -150563049 + (TG)n Simple_repeat Simple_repeat 1 38 0 195 100 0 0 chr3 76963122 76963152 -150561426 + (CA)n Simple_repeat Simple_repeat 2 31 0 762 175 105 65 chr3 76963152 76963352 -150561226 + MER2 DNA MER2_type 4 211 -134 210 128 0 0 chr3 76963494 76963533 -150561045 + (TTA)n Simple_repeat Simple_repeat 2 40 0 277 295 63 0 chr3 76963536 76963631 -150560947 - MIR SINE MIR -109 153 53 3247 218 46 14 chr3 76964959 76965759 -150558819 + L1MD2 LINE L1 5513 6338 -21 828 266 39 11 chr3 76965793 76966079 -150558499 - L1MEc LINE L1 -3121 3094 2801 299 202 138 18 chr3 76966075 76966184 -150558394 - L1MEc LINE L1 -4019 2377 2256 * 761 245 83 0 chr3 76966189 76966405 -150558173 + L1MB4 LINE L1 4631 4864 -1282 2520 148 50 26 chr3 76966661 76967122 -150557456 + MER101 LTR ERV1 3 474 0 921 161 63 5 chr3 76968270 76968475 -150556103 - L1MA4 LINE L1 -5 6295 6079 1148 204 28 11 chr3 76968479 76969148 -150555430 + L1MB4 LINE L1 4855 5658 -522 381 78 0 31 chr3 76969148 76969210 -150555368 + L1MB1 LINE L1 6107 6168 0 1148 204 28 11 chr3 76969210 76969513 -150555065 + L1MB4 LINE L1 5658 5954 -226 283 227 16 87 chr3 76971792 76971977 -150552601 + (CCCA)n Simple_repeat Simple_repeat 2 173 0 215 215 15 85 chr3 76971990 76972120 -150552458 + (CCCA)n Simple_repeat Simple_repeat 2 122 0 21 0 0 0 chr3 76972163 76972184 -150552394 + AT_rich Low_complexity Low_complexity 1 21 0 1394 120 0 0 chr3 76972508 76972699 -150551879 - AluSg1 SINE Alu -113 196 6 233 0 62 0 chr3 76973565 76973597 -150550981 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 1542 157 41 76 chr3 76975541 76975938 -150548640 - MER67C LTR ERV1 -230 284 1 260 308 51 26 chr3 76977123 76977240 -150547338 + L2 LINE L2 3193 3312 -1 21 0 0 0 chr3 76977240 76977261 -150547317 + AT_rich Low_complexity Low_complexity 1 21 0 2121 103 14 0 chr3 76978442 76978732 -150545846 + AluSp SINE Alu 1 294 -19 222 176 0 0 chr3 76979415 76979466 -150545112 + CT-rich Low_complexity Low_complexity 1 51 0 180 0 0 0 chr3 76979604 76979624 -150544954 + (TC)n Simple_repeat Simple_repeat 1 20 0 10153 220 30 16 chr3 76980088 76983224 -150541354 + L1M1 LINE L1 484 3663 -3185 1308 170 45 4 chr3 76983202 76983467 -150541111 + L1M1 LINE L1 6178 6453 -552 * 503 358 106 3 chr3 76983669 76983990 -150540588 + LTR16A LTR ERVL 13 366 -84 840 314 140 11 chr3 76984503 76984596 -150539982 - L2 LINE L2 -1106 2208 2128 1896 87 0 8 chr3 76984596 76984838 -150539740 + AluSq SINE Alu 1 240 -73 840 314 140 11 chr3 76984838 76985209 -150539369 - L2 LINE L2 -1186 2128 1684 214 262 49 0 chr3 76985200 76985261 -150539317 + L3 LINE CR1 1512 1575 -2 * 1818 141 10 10 chr3 76985687 76985977 -150538601 + AluJo SINE Alu 23 312 0 2098 127 7 0 chr3 76987624 76987931 -150536647 - AluSx SINE Alu -3 309 1 257 261 35 35 chr3 76987961 76988076 -150536502 + LTR67 LTR ERVL 443 557 0 443 400 25 9 chr3 76988309 76988629 -150535949 + L2 LINE L2 2431 2755 -559 198 321 25 12 chr3 76988819 76988900 -150535678 + L2 LINE L2 2969 3050 -222 1597 186 83 28 chr3 76990598 76990776 -150533802 - MSTD LTR MaLR -8 386 219 354 23 0 0 chr3 76990776 76990819 -150533759 + (CAGA)n Simple_repeat Simple_repeat 2 44 0 1597 186 83 28 chr3 76990819 76991004 -150533574 - MSTD LTR MaLR -175 219 1 1916 157 39 41 chr3 76991713 76992077 -150532501 - THE1B LTR MaLR 0 364 2 734 181 0 0 chr3 76992219 76992335 -150532243 + FLAM_C SINE Alu 2 117 -16 26 30 0 0 chr3 76993380 76993413 -150531165 + AT_rich Low_complexity Low_complexity 1 33 0 249 57 0 0 chr3 76995669 76995704 -150528874 + (CA)n Simple_repeat Simple_repeat 2 36 0 2841 199 23 12 chr3 76996064 76996636 -150527942 - LTR69 LTR ERVL -10 578 1 503 290 210 5 chr3 76997167 76997381 -150527197 + MIR SINE MIR 5 262 0 206 239 0 15 chr3 76997434 76997501 -150527077 + (TATATG)n Simple_repeat Simple_repeat 1 66 0 698 99 99 0 chr3 76997740 76997851 -150526727 - L1PB1 LINE L1 0 6151 6030 2818 171 45 9 chr3 76997968 76998501 -150526077 + MER39 LTR ERV1 156 707 0 223 357 36 76 chr3 76998935 76999184 -150525394 + L3 LINE CR1 1316 1554 -23 434 338 53 13 chr3 76999314 76999542 -150525036 + MIR SINE MIR 25 261 -1 2108 129 0 13 chr3 76999585 76999887 -150524691 + AluSx SINE Alu 1 298 -14 21 0 0 0 chr3 77000712 77000733 -150523845 + AT_rich Low_complexity Low_complexity 1 21 0 3531 26 0 0 chr3 77001003 77001421 -150523157 + L1PA4 LINE L1 5738 6155 0 185 196 20 0 chr3 77001993 77002044 -150522534 + CT-rich Low_complexity Low_complexity 2 53 0 293 96 0 39 chr3 77002082 77002134 -150522444 - L1MA9 LINE L1 -38 6274 6225 250 212 0 106 chr3 77002106 77002219 -150522359 + L1MC4 LINE L1 6603 6703 -1339 * 282 271 0 12 chr3 77002261 77002346 -150522232 - L1MC4 LINE L1 -1345 6697 6614 228 246 0 0 chr3 77002393 77002458 -150522120 - L1MC4 LINE L1 -1342 6700 6636 * 2208 176 61 77 chr3 77002449 77002790 -150521788 - L1MA9 LINE L1 -73 6239 5911 7521 31 0 0 chr3 77002790 77003973 -150520605 - L1PA4 LINE L1 0 6155 4980 2208 176 61 77 chr3 77003973 77004240 -150520338 - L1MA9 LINE L1 -401 5911 5641 24 0 0 0 chr3 77004484 77004508 -150520070 + AT_rich Low_complexity Low_complexity 1 24 0 350 331 125 5 chr3 77005188 77005372 -150519206 - MIR SINE MIR -37 225 20 445 260 161 36 chr3 77009494 77009717 -150514861 + MIR SINE MIR 2 252 -10 286 235 20 71 chr3 77010145 77010243 -150514335 - L2 LINE L2 -2 3311 3219 189 0 0 0 chr3 77010536 77010557 -150514021 + (T)n Simple_repeat Simple_repeat 1 21 0 353 314 68 0 chr3 77012040 77012158 -150512420 - L2 LINE L2 0 3313 3188 2016 103 0 58 chr3 77012474 77012786 -150511792 - AluSx SINE Alu -18 294 1 22 35 0 0 chr3 77012851 77012880 -150511698 + AT_rich Low_complexity Low_complexity 1 29 0 244 304 17 35 chr3 77013875 77013990 -150510588 - MARNA DNA Mariner -409 177 65 2725 32 0 0 chr3 77015469 77015780 -150508798 + AluY SINE Alu 1 311 0 481 206 237 8 chr3 77015958 77016089 -150508489 + MER58 DNA MER1_type 1 161 -2259 2153 96 7 17 chr3 77016253 77016554 -150508024 + AluSx SINE Alu 1 298 -14 288 0 0 0 chr3 77016554 77016586 -150507992 + (TA)n Simple_repeat Simple_repeat 2 33 0 233 214 60 71 chr3 77016885 77016969 -150507609 - MIR SINE MIR -70 192 110 628 264 34 39 chr3 77017350 77017528 -150507050 - MIR SINE MIR -79 183 7 626 281 40 13 chr3 77021626 77021850 -150502728 + MLT1K LTR MaLR 359 588 0 2349 110 36 8 chr3 77021974 77022339 -150502239 - THE1C LTR MaLR 0 375 1 246 264 73 64 chr3 77022853 77022977 -150501601 + MIR3 SINE MIR 36 163 -45 353 358 0 30 chr3 77023521 77023686 -150500892 + L3 LINE CR1 1243 1402 -175 266 274 133 58 chr3 77024332 77024573 -150500005 + MLT1L LTR MaLR 357 615 0 933 211 0 0 chr3 77024608 77024783 -150499795 - FAM SINE Alu 0 175 1 27 0 0 0 chr3 77024892 77024919 -150499659 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr3 77025381 77025407 -150499171 + AT_rich Low_complexity Low_complexity 1 26 0 1027 139 0 0 chr3 77025579 77025723 -150498855 + AluSq/x SINE Alu 1 144 -169 21 36 0 0 chr3 77026146 77026174 -150498404 + AT_rich Low_complexity Low_complexity 1 28 0 694 271 27 16 chr3 77030714 77030972 -150493606 - MIR SINE MIR 0 262 2 5118 64 2 0 chr3 77031149 77031793 -150492785 + L1PA8A LINE L1 5394 6038 -93 346 282 111 51 chr3 77034204 77034438 -150490140 - MLT1K LTR MaLR -9 579 332 5285 165 40 4 chr3 77034767 77036182 -150488396 + L1MA8 LINE L1 4820 6288 -3 22 35 0 0 chr3 77037518 77037547 -150487031 + AT_rich Low_complexity Low_complexity 1 29 0 664 227 117 0 chr3 77037849 77038012 -150486566 - MER5A DNA MER1_type -4 185 4 767 290 76 0 chr3 77038021 77038259 -150486319 + LTR16A LTR ERVL 125 380 -70 227 361 25 54 chr3 77038530 77038810 -150485768 + L2 LINE L2 2364 2635 -679 2096 99 3 64 chr3 77038982 77039294 -150485284 + AluSq SINE Alu 2 294 -19 310 310 78 21 chr3 77039609 77039751 -150484827 - MIR3 SINE MIR -4 204 55 324 278 0 40 chr3 77040156 77040282 -150484296 + MER112 DNA MER1_type 138 258 -2 1266 225 40 43 chr3 77040446 77040819 -150483759 - MLT1A2 LTR MaLR -2 372 1 2309 153 23 5 chr3 77041482 77041868 -150482710 + MSTB LTR MaLR 1 393 -33 2405 75 7 3 chr3 77042015 77042323 -150482255 - AluY SINE Alu -2 309 1 1556 166 42 7 chr3 77042576 77042735 -150481843 - AluSx SINE Alu -19 293 118 420 37 0 0 chr3 77042735 77042789 -150481789 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 1556 166 42 7 chr3 77042789 77042912 -150481666 - AluSx SINE Alu -194 118 1 214 268 73 49 chr3 77043158 77043240 -150481338 - L2 LINE L2 -20 3293 3210 2486 160 42 13 chr3 77043388 77043844 -150480734 + MER70A LTR ERVL 4 472 0 183 74 0 0 chr3 77046326 77046337 -150478241 + (CTAAA)n Simple_repeat Simple_repeat 3 13 -16 2480 57 3 0 chr3 77046337 77046637 -150477941 + AluY SINE Alu 1 301 -10 183 74 0 0 chr3 77046637 77046652 -150477926 + (CTAAA)n Simple_repeat Simple_repeat 12 29 0 189 253 21 84 chr3 77047028 77047111 -150477467 - L2 LINE L2 0 3313 3237 220 364 141 0 chr3 77047111 77047295 -150477283 + MIR SINE MIR 4 213 -49 219 36 0 0 chr3 77049996 77050024 -150474554 + (TG)n Simple_repeat Simple_repeat 2 29 0 201 45 45 23 chr3 77050027 77050071 -150474507 + (GA)n Simple_repeat Simple_repeat 2 46 0 912 201 102 31 chr3 77050136 77050390 -150474188 - MER92B LTR ERV1 -66 570 299 867 279 12 12 chr3 77053272 77053530 -150471048 + MER46C DNA MER2_type 79 336 -2 390 319 22 38 chr3 77053535 77053720 -150470858 - MIR SINE MIR -79 183 2 5232 129 37 17 chr3 77054367 77056330 -150468248 + L1PA15 LINE L1 4198 6165 0 590 230 0 24 chr3 77057767 77057893 -150466685 - FLAM_A SINE Alu -10 123 1 342 184 54 189 chr3 77057975 77058160 -150466418 + MLT1K LTR MaLR 366 525 -63 2082 246 63 33 chr3 77058600 77059766 -150464812 + L1ME2 LINE L1 4740 5942 -222 729 246 42 14 chr3 77060129 77060344 -150464234 + L1ME2 LINE L1 5944 6164 0 560 53 13 0 chr3 77060371 77060447 -150464131 + (TTCC)n Simple_repeat Simple_repeat 2 78 0 818 228 25 0 chr3 77060447 77060609 -150463969 - FRAM SINE Alu 0 166 1 632 297 130 17 chr3 77060859 77061206 -150463372 + HAL1 LINE L1 1529 1914 -593 300 323 24 24 chr3 77061886 77062053 -150462525 - HAL1 LINE L1 -314 2193 2027 226 242 48 0 chr3 77062343 77062405 -150462173 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 185 273 171 0 chr3 77062480 77062568 -150462010 + MIR SINE MIR 160 262 0 432 366 0 21 chr3 77062648 77062834 -150461744 + MIR3 SINE MIR 22 203 -5 185 256 0 0 chr3 77062990 77063029 -150461549 - L2 LINE L2 -7 3306 3268 256 246 24 63 chr3 77066231 77066357 -150458221 - MLT1L LTR MaLR -176 439 319 333 308 75 75 chr3 77066985 77067345 -150457233 + MLT1K LTR MaLR 142 501 -87 181 358 11 53 chr3 77067574 77067669 -150456909 + MIR SINE MIR 20 110 -152 1641 146 61 8 chr3 77067980 77068241 -150456337 + AluJo SINE Alu 16 290 -22 446 279 41 84 chr3 77068451 77068913 -150455665 - MER65A LTR ERV1 -1 444 3 330 67 0 0 chr3 77070027 77070072 -150454506 + (CA)n Simple_repeat Simple_repeat 2 46 0 1760 132 90 34 chr3 77072787 77073142 -150451436 + THE1C LTR MaLR 1 375 0 824 189 18 6 chr3 77075376 77075540 -150449038 + FRAM SINE Alu 1 166 0 210 105 0 0 chr3 77075678 77075716 -150448862 + (A)n Simple_repeat Simple_repeat 1 38 0 2513 47 7 0 chr3 77076236 77076535 -150448043 + AluY SINE Alu 2 302 -9 1149 237 11 0 chr3 77076665 77076943 -150447635 + Tigger6 DNA MER2_type 1317 1597 0 250 261 50 34 chr3 77077270 77077389 -150447189 + MLT2E LTR ERVL 506 626 -2 296 382 32 14 chr3 77077680 77077900 -150446678 + ERVL LTR ERVL 353 576 -5188 367 277 0 9 chr3 77077903 77078015 -150446563 - LTR33A LTR ERVL 0 523 413 375 303 112 40 chr3 77078939 77079286 -150445292 - MLT1J LTR MaLR 0 511 140 223 179 30 0 chr3 77080148 77080215 -150444363 + (TCTA)n Simple_repeat Simple_repeat 1 69 0 2093 129 23 9 chr3 77080500 77080850 -150443728 + L1MA4A LINE L1 5944 6298 -5 565 257 20 0 chr3 77081152 77081300 -150443278 + MER103 DNA DNA 10 160 -6 300 243 99 91 chr3 77081334 77081554 -150443024 + MLT1J2 LTR MaLR 42 278 -168 242 263 0 0 chr3 77081594 77081651 -150442927 + MLT1J2 LTR MaLR 357 413 -37 351 0 0 0 chr3 77082209 77082248 -150442330 + (CA)n Simple_repeat Simple_repeat 1 39 0 735 180 96 22 chr3 77082261 77082439 -150442139 - L1MD3 LINE L1 -188 7807 7617 768 192 16 50 chr3 77082439 77082621 -150441957 + MLT2C1 LTR ERVL 1 176 -221 2165 151 17 22 chr3 77082646 77083051 -150441527 - L1MA7 LINE L1 -8 6283 5881 7248 24 10 2 chr3 77086674 77088277 -150436301 - L1PA3 LINE L1 0 6155 4566 1530 10 0 73 chr3 77088276 77088481 -150436097 + L1PA3 LINE L1 4373 4562 -1584 * 26 0 0 0 chr3 77088919 77088945 -150435633 + AT_rich Low_complexity Low_complexity 1 26 0 493 337 135 14 chr3 77091094 77091532 -150433046 + L2 LINE L2 2750 3235 -78 2044 133 0 0 chr3 77092751 77093175 -150431403 - AluSc SINE Alu 0 432 9 2094 88 27 10 chr3 77093677 77093971 -150430607 - AluSp SINE Alu -10 303 5 2339 94 0 0 chr3 77095254 77095552 -150429026 + AluSx SINE Alu 1 298 -14 282 274 96 70 chr3 77097605 77097762 -150426816 - MIR SINE MIR -93 169 9 381 333 198 22 chr3 77099525 77099798 -150424780 - L3 LINE CR1 -24 1553 1233 542 232 36 0 chr3 77099830 77099942 -150424636 - MER2 DNA MER2_type 0 345 230 692 73 10 0 chr3 77100984 77101080 -150423498 - L1PA15 LINE L1 -191 5974 5878 1121 126 32 5 chr3 77101080 77101269 -150423309 + L1PA15 LINE L1 5970 6164 -1 1152 248 20 72 chr3 77101271 77101675 -150422903 - MER34 LTR ERV1 -158 384 2 1690 154 39 26 chr3 77101834 77102139 -150422439 - AluSx SINE Alu -1 311 3 201 237 0 0 chr3 77102892 77102930 -150421648 + (CA)n Simple_repeat Simple_repeat 1 38 0 223 375 117 17 chr3 77103287 77103407 -150421171 - L2 LINE L2 -18 3254 3123 185 175 0 25 chr3 77103810 77103850 -150420728 - MIR SINE MIR -165 97 59 2005 159 43 19 chr3 77103991 77104362 -150420216 - MSTB LTR MaLR -46 380 1 22 35 0 0 chr3 77104639 77104668 -150419910 + AT_rich Low_complexity Low_complexity 1 29 0 386 222 111 20 chr3 77105168 77105321 -150419257 - MER104 DNA Tc2 -7 173 7 5712 109 13 19 chr3 77106009 77107233 -150417345 + L1PA13 LINE L1 4926 6161 -2 26 30 0 0 chr3 77107367 77107400 -150417178 + AT_rich Low_complexity Low_complexity 1 33 0 2455 70 0 0 chr3 77107432 77107732 -150416846 + AluY SINE Alu 3 302 -9 255 170 0 0 chr3 77107804 77107851 -150416727 + (TA)n Simple_repeat Simple_repeat 2 48 0 525 307 62 43 chr3 77108929 77109186 -150415392 + MIR SINE MIR 1 262 0 25 0 0 0 chr3 77109442 77109467 -150415111 + AT_rich Low_complexity Low_complexity 1 25 0 252 262 123 25 chr3 77109496 77109618 -150414960 + L2 LINE L2 3035 3168 -145 448 81 0 0 chr3 77109624 77109686 -150414892 + U2 snRNA snRNA 2 63 -125 24 53 0 0 chr3 77110016 77110054 -150414524 + AT_rich Low_complexity Low_complexity 1 38 0 885 59 25 0 chr3 77110770 77110888 -150413690 + L1PB1 LINE L1 6030 6150 -1 1489 143 34 4 chr3 77110938 77111204 -150413374 + L1MA9 LINE L1 6025 6298 -14 5238 129 5 52 chr3 77111207 77112530 -150412048 + L1PA16 LINE L1 4873 6156 -10 285 298 64 47 chr3 77112777 77112948 -150411630 + MIR SINE MIR 33 206 -56 23 33 0 0 chr3 77113791 77113821 -150410757 + AT_rich Low_complexity Low_complexity 1 30 0 400 224 179 77 chr3 77113899 77114095 -150410483 - MIR SINE MIR -39 223 8 21 36 0 0 chr3 77114507 77114535 -150410043 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr3 77115135 77115172 -150409406 + AT_rich Low_complexity Low_complexity 1 37 0 13868 130 33 28 chr3 77115250 77117652 -150406926 + Tigger1 DNA MER2_type 4 2418 0 272 284 0 0 chr3 77117995 77118069 -150406509 + (TCCA)n Simple_repeat Simple_repeat 3 76 0 1178 157 10 0 chr3 77120300 77120497 -150404081 + Tigger1 DNA MER2_type 1 199 -2219 772 353 78 9 chr3 77121872 77122322 -150402256 + L3 LINE CR1 764 1244 -333 226 216 20 0 chr3 77122341 77122392 -150402186 + L1PBb LINE L1 372 423 -5781 339 326 44 22 chr3 77122437 77122572 -150402006 + L3 LINE CR1 1402 1539 -38 18046 175 108 7 chr3 77122770 77123271 -150401307 - L1M1 LINE L1 -2699 4866 4417 11293 37 6 9 chr3 77123271 77125418 -150399160 + L1PA4 LINE L1 4007 6152 -3 216 0 0 0 chr3 77125427 77125451 -150399127 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 18046 175 108 7 chr3 77125451 77126952 -150397626 - L1M1 LINE L1 -3155 4410 3062 180 0 0 0 chr3 77126952 77126972 -150397606 + (TC)n Simple_repeat Simple_repeat 1 20 0 18046 175 108 7 chr3 77126972 77129336 -150395242 - L1M1 LINE L1 -4503 3062 25 270 356 121 40 chr3 77129350 77129828 -150394750 + L2 LINE L2 2365 2881 -433 400 333 172 25 chr3 77130574 77131103 -150393475 + MLT1L LTR MaLR 2 608 -7 309 327 35 0 chr3 77131330 77131443 -150393135 + L2 LINE L2 3179 3295 -18 22 56 0 0 chr3 77131789 77131825 -150392753 + AT_rich Low_complexity Low_complexity 1 36 0 217 209 0 0 chr3 77132078 77132121 -150392457 - MIR3 SINE MIR -45 163 121 26 88 0 0 chr3 77134160 77134228 -150390350 + AT_rich Low_complexity Low_complexity 1 68 0 337 265 127 13 chr3 77134516 77134673 -150389905 - MIR SINE MIR -46 216 38 25 0 0 0 chr3 77135260 77135285 -150389293 + AT_rich Low_complexity Low_complexity 1 25 0 722 232 152 5 chr3 77136042 77136240 -150388338 - MIR SINE MIR -24 238 12 281 324 108 64 chr3 77136491 77137133 -150387445 - L2 LINE L2 -575 2739 2070 225 269 82 60 chr3 77137246 77137380 -150387198 - MER5A DNA MER1_type -3 186 50 441 308 38 15 chr3 77137407 77137540 -150387038 + MIR SINE MIR 6 141 -121 201 94 0 0 chr3 77138312 77138344 -150386234 + (CA)n Simple_repeat Simple_repeat 2 33 0 1857 171 18 9 chr3 77138498 77138837 -150385741 + MLT1A1 LTR MaLR 24 365 0 259 304 13 0 chr3 77138865 77138944 -150385634 + MIR SINE MIR 183 262 0 32 0 0 0 chr3 77138950 77138982 -150385596 + AT_rich Low_complexity Low_complexity 1 32 0 221 298 0 0 chr3 77139067 77139151 -150385427 + (TA)n Simple_repeat Simple_repeat 1 84 0 295 199 96 51 chr3 77139255 77139411 -150385167 - L1ME LINE L1 -316 5805 5643 1039 138 29 0 chr3 77139720 77139894 -150384684 + L1PA16 LINE L1 5979 6157 -9 5643 105 36 12 chr3 77141826 77142677 -150381901 + MER41A-int LTR ERV1 5075 5946 0 4019 91 5 0 chr3 77142677 77143228 -150381350 + MER41A LTR ERV1 1 554 0 207 326 22 0 chr3 77143440 77143486 -150381092 - L2 LINE L2 -85 3187 3141 421 137 0 14 chr3 77143599 77143672 -150380906 + MER4A LTR ERV1 1 72 -592 1473 125 197 78 chr3 77143677 77144038 -150380540 + MER4A LTR ERV1 261 664 0 2252 119 3 0 chr3 77144437 77144748 -150379830 + AluSx SINE Alu 1 312 0 389 288 74 42 chr3 77145006 77145221 -150379357 - MIR SINE MIR 0 262 41 34 0 0 0 chr3 77146125 77146159 -150378419 + AT_rich Low_complexity Low_complexity 1 34 0 232 196 216 39 chr3 77147353 77147455 -150377123 - MARNA DNA Mariner -316 270 151 683 336 29 0 chr3 77149145 77149386 -150375192 - MIR SINE MIR -14 248 1 203 151 14 55 chr3 77149663 77149736 -150374842 + GA-rich Low_complexity Low_complexity 3 72 0 214 364 57 30 chr3 77149737 77150141 -150374437 - L2 LINE L2 -912 2402 1988 216 0 0 0 chr3 77150603 77150627 -150373951 + (TCTA)n Simple_repeat Simple_repeat 2 25 0 791 165 27 127 chr3 77151584 77151844 -150372734 - MER106A DNA MER1_type 0 236 3 302 279 123 8 chr3 77154271 77154393 -150370185 + L2 LINE L2 3137 3272 0 511 330 112 4 chr3 77154629 77154862 -150369716 + MIR SINE MIR 5 262 0 256 291 12 35 chr3 77155842 77155928 -150368650 - L2 LINE L2 -1 3312 3229 1265 197 28 14 chr3 77157893 77158172 -150366406 + MLT1D LTR MaLR 239 502 -3 4379 208 32 40 chr3 77158174 77159601 -150364977 + L1MD1 LINE L1 4828 6242 0 184 175 0 25 chr3 77159617 77159657 -150364921 + L2 LINE L2 3275 3313 0 222 339 43 75 chr3 77162278 77162390 -150362188 - MIR3 SINE MIR -14 194 89 1811 142 0 42 chr3 77162390 77162699 -150361879 - AluSq SINE Alu -15 298 3 222 339 43 75 chr3 77162699 77162772 -150361806 - MIR3 SINE MIR -119 89 15 22 56 0 0 chr3 77162788 77162824 -150361754 + AT_rich Low_complexity Low_complexity 1 36 0 383 265 41 71 chr3 77163179 77163349 -150361229 + L2 LINE L2 3149 3313 0 1637 173 205 3 chr3 77164139 77164515 -150360063 + LOR1b LTR ERV1 10 461 0 22 0 0 0 chr3 77165105 77165127 -150359451 + AT_rich Low_complexity Low_complexity 1 22 0 185 377 31 23 chr3 77166240 77166370 -150358208 + L2 LINE L2 235 365 -2949 * 669 205 7 33 chr3 77166358 77166509 -150358069 + MER5B DNA MER1_type 29 175 -3 1920 332 152 32 chr3 77166622 77168277 -150356301 + L2 LINE L2 1180 3103 -210 1898 112 0 0 chr3 77168277 77168535 -150356043 - AluSx SINE Alu -19 293 36 1920 332 152 32 chr3 77168535 77168775 -150355803 + L2 LINE L2 3103 3313 0 252 243 0 0 chr3 77168907 77168981 -150355597 + (TA)n Simple_repeat Simple_repeat 1 74 0 25 31 0 0 chr3 77169235 77169267 -150355311 + AT_rich Low_complexity Low_complexity 1 32 0 535 288 5 52 chr3 77169558 77169770 -150354808 - MLT1J LTR MaLR -246 265 64 1931 122 37 10 chr3 77169936 77170232 -150354346 - AluSq SINE Alu -9 304 1 2239 111 32 24 chr3 77172067 77172437 -150352141 + THE1C LTR MaLR 1 373 -2 22 35 0 0 chr3 77172796 77172825 -150351753 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 77173158 77173181 -150351397 + AT_rich Low_complexity Low_complexity 1 23 0 267 31 0 0 chr3 77174342 77174374 -150350204 + (TG)n Simple_repeat Simple_repeat 1 32 0 2655 188 38 4 chr3 77174394 77174922 -150349656 + MER44D DNA MER2_type 5 605 0 339 132 0 0 chr3 77174923 77174991 -150349587 + (CA)n Simple_repeat Simple_repeat 2 69 0 4081 87 2 2 chr3 77175107 77175661 -150348917 + MER41A LTR ERV1 1 554 0 296 143 338 13 chr3 77175661 77175738 -150348840 + MER41A-int LTR ERV1 1 102 -5844 3143 156 36 18 chr3 77175747 77176353 -150348225 + MER41A-int LTR ERV1 1 366 -4851 435 38 0 0 chr3 77176353 77176406 -150348172 + (TC)n Simple_repeat Simple_repeat 2 54 0 3143 156 36 18 chr3 77176406 77176871 -150347707 + MER41A-int LTR ERV1 366 821 -4396 6283 138 28 28 chr3 77176904 77177754 -150346824 + PABL_A-int LTR ERV1 3113 3965 -1050 2134 113 3 0 chr3 77177754 77178054 -150346524 - AluSg SINE Alu -9 301 1 6283 138 28 28 chr3 77178054 77178321 -150346257 + PABL_A-int LTR ERV1 3964 4230 -785 255 366 106 0 chr3 77178694 77178817 -150345761 + L2 LINE L2 3122 3257 -15 25 31 0 0 chr3 77178858 77178890 -150345688 + AT_rich Low_complexity Low_complexity 1 32 0 207 0 0 0 chr3 77178943 77178966 -150345612 + (TC)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr3 77178965 77178988 -150345590 + (TG)n Simple_repeat Simple_repeat 2 24 0 383 266 187 54 chr3 77179521 77179724 -150344854 - MIR SINE MIR -29 233 4 2365 70 0 3 chr3 77180072 77180370 -150344208 + AluY SINE Alu 1 297 -14 1072 229 46 86 chr3 77181654 77182109 -150342469 + MER31-int LTR ERV1 3667 4103 -833 1257 208 34 15 chr3 77182153 77182422 -150342156 - AluJo SINE Alu -30 282 9 21 36 0 0 chr3 77182619 77182647 -150341931 + AT_rich Low_complexity Low_complexity 1 28 0 908 259 80 52 chr3 77184536 77185072 -150339506 - HAL1b LINE L1 -240 1108 558 1058 179 94 66 chr3 77185142 77185461 -150339117 - L1MA9 LINE L1 -22 6290 5963 1692 119 0 8 chr3 77186212 77186448 -150338130 + AluSq SINE Alu 1 234 -79 35 24 0 0 chr3 77186631 77186673 -150337905 + AT_rich Low_complexity Low_complexity 1 42 0 254 337 76 0 chr3 77187437 77187529 -150337049 + L2 LINE L2 3195 3293 -20 393 143 43 0 chr3 77188545 77188615 -150335963 - L1MC2 LINE L1 -9 6335 6263 21 0 0 0 chr3 77188948 77188969 -150335609 + AT_rich Low_complexity Low_complexity 1 21 0 29 94 0 0 chr3 77189716 77189801 -150334777 + AT_rich Low_complexity Low_complexity 1 85 0 21 36 0 0 chr3 77189884 77189912 -150334666 + AT_rich Low_complexity Low_complexity 1 28 0 6697 153 194 5 chr3 77189912 77192206 -150332372 - L1MA3 LINE L1 -5 6300 3537 314 163 0 0 chr3 77192837 77192886 -150331692 + Alu SINE Alu 2 50 -253 1993 104 41 0 chr3 77193057 77193365 -150331213 - AluSc SINE Alu 0 319 1 1446 129 78 19 chr3 77193664 77193920 -150330658 + MER7A DNA MER2_type 1 269 -77 249 83 0 0 chr3 77194017 77194053 -150330525 + (CA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr3 77194523 77194551 -150330027 + AT_rich Low_complexity Low_complexity 1 28 0 1137 72 0 0 chr3 77194660 77194812 -150329766 - L1PA4 LINE L1 0 6155 6004 278 125 42 0 chr3 77194930 77194978 -150329600 - MER68 LTR ERV1 -512 50 1 343 110 0 24 chr3 77195798 77195880 -150328698 + (TA)n Simple_repeat Simple_repeat 2 81 0 214 295 152 18 chr3 77196932 77197044 -150327534 + MIR SINE MIR 104 230 -32 25 75 0 0 chr3 77197065 77197118 -150327460 + AT_rich Low_complexity Low_complexity 1 53 0 497 331 7 7 chr3 77197276 77197415 -150327163 - L2 LINE L2 0 3272 3134 1520 201 68 12 chr3 77197801 77198139 -150326439 - MLT1A1 LTR MaLR 0 365 9 248 277 36 0 chr3 77198495 77198578 -150326000 + CT-rich Low_complexity Low_complexity 2 87 0 191 373 119 8 chr3 77198770 77198904 -150325674 + MIR3 SINE MIR 20 168 -40 31 0 0 24 chr3 77198906 77198929 -150325649 + AT_rich Low_complexity Low_complexity 1 24 -17 2158 95 20 3 chr3 77198929 77199224 -150325354 - AluSx SINE Alu -12 300 1 31 0 0 24 chr3 77199224 77199242 -150325336 + AT_rich Low_complexity Low_complexity 24 41 0 1604 182 3 0 chr3 77199704 77199990 -150324588 - AluJb SINE Alu 0 312 26 486 172 0 0 chr3 77201005 77201104 -150323474 + GA-rich Low_complexity Low_complexity 4 102 0 663 251 9 81 chr3 77201106 77201317 -150323261 + MLT1A1 LTR MaLR 1 196 -169 440 261 43 50 chr3 77201968 77202129 -150322449 - MER5B DNA MER1_type 0 178 19 197 298 53 0 chr3 77202125 77202182 -150322396 + L2 LINE L2 3195 3254 -18 * 664 223 76 0 chr3 77202852 77203009 -150321569 + MER58A DNA MER1_type 1 169 -55 25 90 0 0 chr3 77203566 77203633 -150320945 + AT_rich Low_complexity Low_complexity 1 67 0 22 0 0 0 chr3 77203776 77203798 -150320780 + AT_rich Low_complexity Low_complexity 1 22 0 372 229 0 86 chr3 77204538 77204656 -150319922 - MIR SINE MIR 0 262 156 775 237 22 27 chr3 77204656 77204880 -150319698 - MER58A DNA MER1_type -1 223 1 372 229 0 86 chr3 77204880 77204901 -150319677 - MIR SINE MIR -106 156 135 457 339 76 45 chr3 77205455 77206002 -150318576 + L2 LINE L2 2753 3313 0 2233 114 0 0 chr3 77206246 77206553 -150318025 + AluSc SINE Alu 1 307 -2 306 311 53 40 chr3 77207728 77207784 -150316794 - MIR SINE MIR -51 211 157 1609 209 141 25 chr3 77207784 77208267 -150316311 - MER34 LTR ERV1 -3 539 1 306 311 53 40 chr3 77208267 77208361 -150316217 - MIR SINE MIR -105 157 59 233 206 32 0 chr3 77208536 77208599 -150315979 + T-rich Low_complexity Low_complexity 1 65 0 631 324 203 14 chr3 77210259 77210698 -150313880 + L3 LINE CR1 1053 1574 -3 207 0 0 0 chr3 77211198 77211221 -150313357 + (A)n Simple_repeat Simple_repeat 1 23 0 398 288 0 14 chr3 77211889 77211916 -150312662 + GA-rich Low_complexity Low_complexity 1 27 -110 213 39 0 0 chr3 77211916 77211942 -150312636 + (ATG)n Simple_repeat Simple_repeat 3 28 0 398 288 0 14 chr3 77211942 77212053 -150312525 + GA-rich Low_complexity Low_complexity 27 137 0 858 133 91 0 chr3 77213006 77213149 -150311429 - FRAM SINE Alu -13 163 8 1114 160 129 98 chr3 77213432 77213561 -150311017 + AluJo SINE Alu 1 124 -178 2043 118 0 10 chr3 77213561 77213857 -150310721 + AluSg SINE Alu 7 299 -11 1114 160 129 98 chr3 77213857 77214014 -150310564 + AluJo SINE Alu 124 296 -6 4592 238 67 37 chr3 77214190 77217014 -150307564 - L1MD1 LINE L1 -8 6628 3719 600 200 49 4 chr3 77217023 77217219 -150307359 - L1MD1 LINE L1 -4402 2138 1894 42 57 0 0 chr3 77218979 77219049 -150305529 + AT_rich Low_complexity Low_complexity 1 70 0 1882 101 0 4 chr3 77219163 77219421 -150305157 - AluSg SINE Alu -15 295 39 201 274 0 32 chr3 77219863 77219925 -150304653 - L2 LINE L2 -289 2983 2924 921 160 6 0 chr3 77219948 77220104 -150304474 + MSTC LTR MaLR 260 416 -12 184 277 90 45 chr3 77220516 77220671 -150303907 + L2 LINE L2 906 1067 -2247 2205 284 147 58 chr3 77220716 77222600 -150301978 + L2 LINE L2 1264 3313 0 1402 164 3 90 chr3 77222638 77222948 -150301630 - AluJo SINE Alu -29 283 1 2201 119 18 44 chr3 77222972 77223357 -150301221 - THE1C LTR MaLR 0 375 1 237 65 0 0 chr3 77224068 77224099 -150300479 + (AGGGGG)n Simple_repeat Simple_repeat 4 34 0 1594 175 14 17 chr3 77224425 77224717 -150299861 - AluJo SINE Alu -21 291 1 214 176 39 20 chr3 77224806 77224857 -150299721 + GA-rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr3 77225712 77225734 -150298844 + AT_rich Low_complexity Low_complexity 1 22 0 312 323 12 12 chr3 77225756 77225920 -150298658 - MER103 DNA DNA -1 165 2 368 286 86 9 chr3 77226261 77226366 -150298212 - L2 LINE L2 0 3272 3160 203 61 30 0 chr3 77226712 77226745 -150297833 + (TA)n Simple_repeat Simple_repeat 1 34 0 180 77 0 0 chr3 77226759 77226785 -150297793 + (TTG)n Simple_repeat Simple_repeat 2 27 0 607 149 16 58 chr3 77226786 77226907 -150297671 - FRAM SINE Alu -41 135 20 253 318 47 0 chr3 77226940 77227047 -150297531 - MIR SINE MIR -59 203 92 180 367 79 50 chr3 77227070 77227310 -150297268 + L2 LINE L2 3026 3272 0 369 0 0 0 chr3 77227720 77227761 -150296817 + (TA)n Simple_repeat Simple_repeat 2 42 0 3494 12 0 0 chr3 77228005 77228405 -150296173 - L1HS LINE L1 0 6155 5756 299 287 96 0 chr3 77228589 77228683 -150295895 + MER3 DNA MER1_type 42 144 -65 3683 44 0 0 chr3 77228693 77229146 -150295432 - L1PA4 LINE L1 0 6155 5703 2554 56 29 3 chr3 77229146 77229487 -150295091 + L1P LINE L1 4392 4741 -1405 945 188 23 61 chr3 77229512 77229773 -150294805 + Charlie5 DNA MER1_type 2234 2484 -128 1650 199 0 3 chr3 77229898 77230199 -150294379 + AluJb SINE Alu 1 300 -12 2104 113 3 41 chr3 77230434 77230753 -150293825 + AluSc SINE Alu 3 309 0 3199 66 18 1 chr3 77230761 77230781 -150293797 + L1P3 LINE L1 5220 5238 -916 3505 96 0 12 chr3 77230781 77231282 -150293296 - L1PA7 LINE L1 0 6154 5660 3199 66 18 1 chr3 77231282 77231710 -150292868 + L1PA7 LINE L1 5238 5674 -480 370 256 45 68 chr3 77232274 77232407 -150292171 - MIR SINE MIR -87 175 46 520 249 83 69 chr3 77232853 77233130 -150291448 + MER102b DNA MER1_type 33 313 -28 196 342 74 27 chr3 77233194 77233343 -150291235 - MIR SINE MIR -29 233 78 204 125 0 0 chr3 77233581 77233613 -150290965 + (GA)n Simple_repeat Simple_repeat 1 32 0 2215 123 3 0 chr3 77235499 77235807 -150288771 - AluSp SINE Alu -4 309 1 1965 129 73 12 chr3 77235928 77236270 -150288308 - Tigger7 DNA MER2_type 0 2587 2225 610 183 17 26 chr3 77236280 77236395 -150288183 - Tigger7 DNA MER2_type -591 114 1 265 250 0 0 chr3 77236482 77236546 -150288032 - L1ME LINE L1 -542 5620 5557 377 294 12 25 chr3 77236639 77236802 -150287776 - Charlie7 DNA MER1_type -1822 790 630 251 236 69 0 chr3 77236869 77236941 -150287637 + L1M4 LINE L1 3789 3865 -2281 985 283 140 25 chr3 77238603 77239003 -150285575 + MLT1G1 LTR MaLR 148 593 -2 2259 159 44 51 chr3 77239114 77239653 -150284925 + MLT2A2 LTR ERVL 1 515 0 457 62 0 15 chr3 77240320 77240385 -150284193 - MADE1 DNA Mariner -16 64 1 222 160 53 11 chr3 77240870 77240964 -150283614 + (TA)n Simple_repeat Simple_repeat 2 99 0 446 256 26 105 chr3 77241129 77241320 -150283258 + MIR SINE MIR 81 256 -6 269 336 106 9 chr3 77242656 77242769 -150281809 + L2 LINE L2 3127 3250 -22 * 390 317 82 25 chr3 77242758 77243001 -150281577 + L2 LINE L2 2655 2911 -403 216 143 0 0 chr3 77243032 77243074 -150281504 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 3362 290 58 33 chr3 77243094 77244603 -150279975 - L2 LINE L2 -29 3284 1737 2318 86 0 3 chr3 77245934 77246235 -150278343 - AluSx SINE Alu -12 300 1 25 31 0 0 chr3 77246443 77246475 -150278103 + AT_rich Low_complexity Low_complexity 1 32 0 23 97 0 0 chr3 77246968 77247040 -150277538 + AT_rich Low_complexity Low_complexity 1 72 0 233 315 109 11 chr3 77247310 77247402 -150277176 + L2 LINE L2 3168 3268 -4 234 325 145 0 chr3 77249014 77249131 -150275447 + MIR3 SINE MIR 71 204 -4 25 51 0 0 chr3 77249509 77249548 -150275030 + AT_rich Low_complexity Low_complexity 1 39 0 1771 162 3 35 chr3 77249639 77249953 -150274625 - AluJb SINE Alu -8 304 1 1349 243 89 23 chr3 77250934 77251370 -150273208 + LTR40c LTR ERVL 1 465 0 445 275 6 56 chr3 77252056 77252159 -150272419 + L1ME LINE L1 5513 5605 -516 1507 168 0 78 chr3 77252159 77252492 -150272086 + AluJo SINE Alu 1 307 -5 445 275 6 56 chr3 77252492 77252566 -150272012 + L1ME LINE L1 5605 5681 -440 180 0 0 0 chr3 77253300 77253320 -150271258 + (TG)n Simple_repeat Simple_repeat 2 21 0 438 101 76 0 chr3 77253776 77253855 -150270723 - L1MA9 LINE L1 -3 6309 6225 32 26 0 0 chr3 77254034 77254073 -150270505 + AT_rich Low_complexity Low_complexity 1 39 0 956 139 14 0 chr3 77254179 77254323 -150270255 - AluSq/x SINE Alu -167 146 1 252 59 0 0 chr3 77254480 77254514 -150270064 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1940 120 0 11 chr3 77254514 77254797 -150269781 - AluSq SINE Alu -33 280 1 1097 245 148 33 chr3 77255095 77255548 -150269030 + MLT1D LTR MaLR 1 505 0 1739 134 4 0 chr3 77255854 77256107 -150268471 + AluSq SINE Alu 3 256 -57 198 91 0 0 chr3 77256111 77256144 -150268434 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 22 35 0 0 chr3 77258211 77258240 -150266338 + AT_rich Low_complexity Low_complexity 1 29 0 2114 102 6 43 chr3 77258303 77258625 -150265953 - AluSg SINE Alu 0 310 1 23 54 0 0 chr3 77260090 77260127 -150264451 + AT_rich Low_complexity Low_complexity 1 37 0 32 0 0 0 chr3 77260772 77260804 -150263774 + AT_rich Low_complexity Low_complexity 1 32 0 27 62 0 0 chr3 77260919 77260967 -150263611 + AT_rich Low_complexity Low_complexity 1 48 0 2196 97 3 7 chr3 77261001 77261309 -150263269 - AluSp SINE Alu -6 307 1 23 68 0 0 chr3 77261317 77261361 -150263217 + AT_rich Low_complexity Low_complexity 1 44 0 201 74 0 0 chr3 77261640 77261667 -150262911 + (A)n Simple_repeat Simple_repeat 1 27 0 3691 134 55 66 chr3 77262078 77262871 -150261707 + LTR1 LTR ERV1 1 785 0 25 0 0 0 chr3 77263034 77263059 -150261519 + AT_rich Low_complexity Low_complexity 1 25 0 29 47 0 0 chr3 77263552 77263595 -150260983 + AT_rich Low_complexity Low_complexity 1 43 0 2501 40 0 10 chr3 77264229 77264530 -150260048 + AluY SINE Alu 1 298 -13 22 0 0 0 chr3 77266014 77266036 -150258542 + AT_rich Low_complexity Low_complexity 1 22 0 5408 113 0 1 chr3 77266085 77266878 -150257700 - L1P LINE L1 -1656 4490 3699 3312 86 17 4 chr3 77266878 77267331 -150257247 + L1PA8A LINE L1 5662 6131 0 23 78 0 0 chr3 77267320 77267371 -150257207 + AT_rich Low_complexity Low_complexity 1 51 0 238 319 78 17 chr3 77267411 77267527 -150257051 + MIR SINE MIR 134 256 -6 282 319 121 0 chr3 77267902 77268018 -150256560 + L2 LINE L2 3183 3312 -1 389 188 16 141 chr3 77268529 77268657 -150255921 - L2 LINE L2 -7 3306 3195 23 0 0 0 chr3 77268671 77268694 -150255884 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr3 77268852 77268884 -150255694 + AT_rich Low_complexity Low_complexity 1 32 0 218 252 27 135 chr3 77269476 77269587 -150254991 - L3 LINE CR1 -320 1257 1159 727 314 100 14 chr3 77270459 77271522 -150253056 + L1ME3 LINE L1 4804 5948 -214 191 218 91 0 chr3 77272285 77272340 -150252238 - L2 LINE L2 0 3313 3254 29 47 0 0 chr3 77273635 77273678 -150250900 + AT_rich Low_complexity Low_complexity 1 43 0 748 197 30 76 chr3 77273932 77274130 -150250448 - MER5A DNA MER1_type 0 189 1 412 206 10 0 chr3 77274858 77274955 -150249623 + Tigger2 DNA MER2_type 244 341 -2377 * 1881 145 7 0 chr3 77274947 77275243 -150249335 + Tigger2 DNA MER2_type 2421 2718 0 30 0 0 0 chr3 77275435 77275465 -150249113 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr3 77275503 77275532 -150249046 + AT_rich Low_complexity Low_complexity 1 29 0 659 24 12 0 chr3 77275621 77275705 -150248873 - L1PA8 LINE L1 -2 6170 6086 1615 202 45 12 chr3 77276990 77277326 -150247252 - MER7A DNA MER2_type 0 346 2 277 272 0 12 chr3 77278031 77278112 -150246466 + L1MC5 LINE L1 7806 7885 -76 1031 180 6 0 chr3 77278397 77278580 -150245998 + MER105 DNA DNA 3 186 -18 2316 68 7 13 chr3 77279189 77279496 -150245082 + AluY SINE Alu 1 305 -6 1405 220 22 25 chr3 77279621 77279984 -150244594 + MLT1A1 LTR MaLR 4 365 0 3983 179 60 48 chr3 77280590 77281158 -150243420 + L1MB8 LINE L1 4823 5383 -795 1868 158 3 0 chr3 77281158 77281472 -150243106 + AluJo SINE Alu 1 312 0 3983 179 60 48 chr3 77281472 77282245 -150242333 + L1MB8 LINE L1 5383 6178 0 186 129 32 0 chr3 77282627 77282658 -150241920 - L2 LINE L2 -525 2789 2758 411 286 65 60 chr3 77283006 77283223 -150241355 - MIR SINE MIR -35 227 10 1556 188 42 17 chr3 77283288 77283644 -150240934 - MLT1A1 LTR MaLR 0 365 1 238 314 67 0 chr3 77284163 77284268 -150240310 + L2 LINE L2 1391 1502 -1812 233 29 29 0 chr3 77284293 77284327 -150240251 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1782 134 0 0 chr3 77284411 77284658 -150239920 - AluSq SINE Alu -65 248 2 300 272 67 90 chr3 77285381 77285452 -150239126 - L1ME4a LINE L1 0 6121 6050 2069 106 7 0 chr3 77285452 77285759 -150238819 + AluSp SINE Alu 1 309 0 300 272 67 90 chr3 77285759 77285998 -150238580 - L1ME4a LINE L1 -71 6050 5817 285 308 175 50 chr3 77286421 77286759 -150237819 - L2 LINE L2 -1869 1445 1066 357 328 46 17 chr3 77287238 77287412 -150237166 + L2 LINE L2 3130 3308 -5 24 32 0 0 chr3 77287804 77287835 -150236743 + AT_rich Low_complexity Low_complexity 1 31 0 1781 165 45 18 chr3 77288698 77289032 -150235546 + MER61A LTR ERV1 1 343 0 203 234 9 54 chr3 77289724 77289835 -150234743 + T-rich Low_complexity Low_complexity 4 109 0 1249 179 48 62 chr3 77290464 77290755 -150233823 + AluJo SINE Alu 1 287 -25 34 0 0 0 chr3 77290755 77290789 -150233789 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr3 77292270 77292295 -150232283 + AT_rich Low_complexity Low_complexity 1 25 0 268 283 142 47 chr3 77292498 77292604 -150231974 + L2 LINE L2 3182 3297 -16 212 256 0 31 chr3 77293131 77293260 -150231318 + GA-rich Low_complexity Low_complexity 3 127 0 300 281 100 22 chr3 77293408 77293624 -150230954 - LTR33 LTR ERVL -256 265 3 430 264 34 23 chr3 77293802 77294035 -150230543 + MER41B LTR ERV1 50 419 -216 2387 165 41 9 chr3 77294171 77294638 -150229940 + L1MB7 LINE L1 5683 6164 -20 2833 139 73 49 chr3 77295849 77296279 -150228299 - MER21A LTR ERV1 -6 925 478 2210 94 0 3 chr3 77296279 77296577 -150228001 - AluY SINE Alu -14 297 1 2833 139 73 49 chr3 77296577 77296678 -150227900 - MER21A LTR ERV1 -453 478 381 1314 178 42 12 chr3 77296658 77296917 -150227661 - MER21A LTR ERV1 -651 280 14 * 319 113 28 0 chr3 77296990 77297061 -150227517 + (TA)n Simple_repeat Simple_repeat 2 74 0 2905 97 32 5 chr3 77298415 77298847 -150225731 - MLT2A1 LTR ERVL 0 444 1 863 277 58 24 chr3 77298871 77299163 -150225415 + MLT1I LTR MaLR 72 373 -36 886 207 125 34 chr3 77299309 77299604 -150224974 - MER5C DNA MER1_type 0 324 3 199 27 27 54 chr3 77300720 77300757 -150223821 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 513 186 51 59 chr3 77300762 77300880 -150223698 - FLAM_C SINE Alu -15 118 2 189 0 0 0 chr3 77301060 77301081 -150223497 + (GA)n Simple_repeat Simple_repeat 1 21 0 * 522 0 0 0 chr3 77301080 77301138 -150223440 + (TG)n Simple_repeat Simple_repeat 2 59 0 591 173 0 31 chr3 77302418 77302545 -150222033 + Charlie5 DNA MER1_type 1 123 -2489 1303 195 68 11 chr3 77302546 77302656 -150221922 + Charlie5 DNA MER1_type 2234 2336 -288 1809 174 26 15 chr3 77302656 77302996 -150221582 - MER2 DNA MER2_type 0 344 1 1303 195 68 11 chr3 77302996 77303255 -150221323 + Charlie5 DNA MER1_type 2336 2624 0 1240 199 15 8 chr3 77303308 77303574 -150221004 - L1ME1 LINE L1 -9 6157 5890 1130 191 0 5 chr3 77305003 77305207 -150219371 - MER58A DNA MER1_type 0 224 22 556 280 102 49 chr3 77305864 77306786 -150217792 + HAL1b LINE L1 12 1065 -283 303 315 158 0 chr3 77306854 77307000 -150217578 + HAL1b LINE L1 1179 1347 -1 24 32 0 0 chr3 77307318 77307349 -150217229 + AT_rich Low_complexity Low_complexity 1 31 0 537 302 79 40 chr3 77307369 77307847 -150216731 + L1MC4a LINE L1 5354 5851 -297 462 318 77 12 chr3 77307963 77308264 -150216314 - MER102b DNA MER1_type -38 303 2 1398 58 0 0 chr3 77309210 77309383 -150215195 - AluY SINE Alu -10 301 129 38 16 0 47 chr3 77309387 77309451 -150215127 + AT_rich Low_complexity Low_complexity 1 61 0 302 341 85 0 chr3 77309499 77309628 -150214950 + MIR SINE MIR 52 191 -71 181 250 36 36 chr3 77309985 77310041 -150214537 - L2 LINE L2 -54 3259 3204 1298 97 5 0 chr3 77310395 77310581 -150213997 - L1PA5 LINE L1 -1212 4934 4748 7312 34 9 0 chr3 77310581 77311804 -150212774 + L1PA5 LINE L1 4939 6170 0 234 252 15 104 chr3 77312160 77312295 -150212283 - L2 LINE L2 -191 3081 2959 339 359 23 8 chr3 77312847 77312978 -150211600 - L2 LINE L2 0 3272 3140 236 324 39 20 chr3 77313105 77313207 -150211371 + L2 LINE L2 3200 3303 -10 181 244 0 0 chr3 77313184 77313225 -150211353 - L2 LINE L2 -5 3308 3268 * 288 324 67 0 chr3 77313315 77313420 -150211158 + MIR SINE MIR 113 224 -38 1259 233 45 45 chr3 77313665 77314039 -150210539 - MLT1A2 LTR MaLR 0 374 1 180 143 0 0 chr3 77314578 77314606 -150209972 - L2 LINE L2 -29 3284 3257 220 253 66 33 chr3 77314669 77314760 -150209818 + MIR SINE MIR 86 179 -83 21 36 0 0 chr3 77314946 77314974 -150209604 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr3 77315003 77315033 -150209545 + AT_rich Low_complexity Low_complexity 1 30 0 313 347 98 17 chr3 77316559 77316732 -150207846 + MIR3 SINE MIR 22 208 0 1926 128 3 3 chr3 77316933 77317257 -150207321 - AluSx SINE Alu 0 324 1 28 0 0 0 chr3 77317295 77317323 -150207255 + AT_rich Low_complexity Low_complexity 1 28 0 833 266 50 17 chr3 77317336 77317577 -150207001 - MIR SINE MIR -1 261 13 2154 95 7 0 chr3 77317597 77317912 -150206666 - AluSp SINE Alu 0 317 1 1956 155 0 0 chr3 77318208 77318492 -150206086 - AluSx SINE Alu -26 286 3 237 65 0 0 chr3 77319232 77319310 -150205268 + (TG)n Simple_repeat Simple_repeat 1 109 0 237 65 0 0 chr3 77319310 77319341 -150205237 + (TG)n Simple_repeat Simple_repeat 2 32 0 4192 25 2 15 chr3 77319674 77320176 -150204402 + L1HS LINE L1 5645 6136 -19 293 0 27 0 chr3 77320176 77320213 -150204365 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 4192 25 2 15 chr3 77320213 77320233 -150204345 + L1HS LINE L1 6136 6155 0 291 390 66 22 chr3 77320584 77320720 -150203858 + L2 LINE L2 3116 3257 -15 432 352 61 5 chr3 77320788 77320984 -150203594 - MIR SINE MIR -3 259 53 288 236 187 5 chr3 77321227 77321430 -150203148 + L1ME4a LINE L1 5835 6074 -47 36 23 0 0 chr3 77321478 77321521 -150203057 + AT_rich Low_complexity Low_complexity 1 43 0 273 183 0 0 chr3 77321874 77321934 -150202644 + (TA)n Simple_repeat Simple_repeat 1 60 0 1139 53 0 0 chr3 77322246 77322378 -150202200 - AluY SINE Alu -179 132 1 22 56 0 0 chr3 77323195 77323231 -150201347 + AT_rich Low_complexity Low_complexity 1 36 0 2804 130 118 6 chr3 77324074 77324820 -150199758 - Tigger3b DNA MER2_type -397 835 1 22 35 0 0 chr3 77325453 77325482 -150199096 + AT_rich Low_complexity Low_complexity 1 29 0 2119 126 3 0 chr3 77325563 77325857 -150198721 - AluSg SINE Alu -15 295 1 446 139 13 0 chr3 77326454 77326533 -150198045 - L1PB4 LINE L1 -7 6149 6070 23 54 0 0 chr3 77326933 77326970 -150197608 + AT_rich Low_complexity Low_complexity 1 37 0 273 311 14 0 chr3 77327607 77327681 -150196897 + GA-rich Low_complexity Low_complexity 4 78 0 234 330 0 33 chr3 77327851 77327942 -150196636 + LTR33 LTR ERVL 10 97 -424 1935 322 80 36 chr3 77327948 77329561 -150195017 + ERVL LTR ERVL 3298 5005 -759 425 279 152 15 chr3 77330089 77330293 -150194285 + LTR33 LTR ERVL 40 271 -250 2035 149 133 16 chr3 77330510 77330893 -150193685 + MSTA LTR MaLR 1 428 0 415 255 69 0 chr3 77331040 77331142 -150193436 + L2 LINE L2 3205 3313 0 1696 243 37 45 chr3 77331475 77331964 -150192614 + L2 LINE L2 2425 2909 -405 3362 117 11 41 chr3 77331964 77332495 -150192083 + MER1A DNA MER1_type 15 529 0 827 305 62 35 chr3 77332500 77332871 -150191707 + L2 LINE L2 2914 3294 -19 298 335 69 13 chr3 77333483 77333784 -150190794 - MERVL LTR ERVL -2713 2772 2505 1357 204 8 4 chr3 77333800 77334040 -150190538 + Tigger7 DNA MER2_type 27 267 -2220 598 140 0 11 chr3 77334038 77334131 -150190447 + Tigger7 DNA MER2_type 2391 2482 -5 * 993 305 125 11 chr3 77334141 77334772 -150189806 - MERVL LTR ERVL -3245 2519 1776 458 330 82 59 chr3 77334822 77335530 -150189048 - MERVL LTR ERVL -4041 1723 1000 248 334 242 7 chr3 77335840 77336142 -150188436 - L2 LINE L2 -544 2770 2398 716 134 0 32 chr3 77336221 77336407 -150188171 + (TA)n Simple_repeat Simple_repeat 1 180 0 26 50 0 0 chr3 77336419 77336459 -150188119 + AT_rich Low_complexity Low_complexity 1 40 0 1166 140 100 8 chr3 77336460 77336710 -150187868 + MER5C DNA MER1_type 1 273 -51 6615 22 0 0 chr3 77336730 77337493 -150187085 - L1PA3 LINE L1 -1 6154 5392 627 259 103 29 chr3 77337671 77337829 -150186749 - MIR SINE MIR -1 261 77 1753 219 3 16 chr3 77337829 77338198 -150186380 - MLT1A1 LTR MaLR -1 364 1 627 259 103 29 chr3 77338198 77338282 -150186296 - MIR SINE MIR -185 77 1 1943 151 3 0 chr3 77338921 77339205 -150185373 + AluJo SINE Alu 1 285 -27 180 0 0 0 chr3 77339411 77339431 -150185147 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 216 0 0 0 chr3 77339744 77339768 -150184810 + (CA)n Simple_repeat Simple_repeat 1 24 0 323 123 77 41 chr3 77340690 77340860 -150183718 + (TA)n Simple_repeat Simple_repeat 2 177 0 1412 181 87 0 chr3 77343115 77343413 -150181165 + MER33 DNA MER1_type 1 324 0 344 203 27 0 chr3 77344400 77344474 -150180104 + MER5A DNA MER1_type 9 84 -105 366 204 88 48 chr3 77344581 77344728 -150179850 + Charlie5 DNA MER1_type 2358 2510 -102 1691 179 14 3 chr3 77345248 77345538 -150179040 - AluJo SINE Alu -19 293 1 25 31 0 0 chr3 77345546 77345578 -150179000 + AT_rich Low_complexity Low_complexity 1 32 0 1188 234 3 19 chr3 77346008 77346376 -150178202 + L1MD2 LINE L1 4935 5296 -850 1803 149 3 27 chr3 77346376 77346530 -150178048 + AluSx SINE Alu 1 146 -166 2707 83 53 16 chr3 77346530 77346962 -150177616 + LTR7 LTR ERV1 1 448 -2 1803 149 3 27 chr3 77346962 77347108 -150177470 + AluSx SINE Alu 146 294 -18 3659 186 69 65 chr3 77347114 77347307 -150177271 + L1MD2 LINE L1 5293 5484 -875 2372 75 0 10 chr3 77347307 77347615 -150176963 + AluY SINE Alu 1 305 -6 3659 186 69 65 chr3 77347615 77347705 -150176873 + L1MD2 LINE L1 5484 5572 -787 2399 84 3 0 chr3 77347705 77348013 -150176565 + AluSc SINE Alu 1 309 0 3659 186 69 65 chr3 77348013 77348770 -150175808 + L1MD2 LINE L1 5572 6338 -21 1188 103 0 0 chr3 77349502 77349676 -150174902 + (TA)n Simple_repeat Simple_repeat 2 175 0 2064 93 47 0 chr3 77349676 77349954 -150174624 - AluSg SINE Alu -18 292 2 376 255 108 57 chr3 77351938 77352095 -150172483 - MIR SINE MIR -44 218 54 6250 153 16 15 chr3 77352931 77354825 -150169753 + L1MA4 LINE L1 4135 6022 -278 327 163 62 0 chr3 77354832 77354912 -150169666 + L1MB3 LINE L1 6091 6175 -8 450 305 39 107 chr3 77355406 77355770 -150168808 - L2 LINE L2 -6 3266 2928 1094 316 88 43 chr3 77356219 77356966 -150167612 - L2 LINE L2 -463 2851 2071 283 210 30 90 chr3 77357141 77357241 -150167337 + MIR SINE MIR 119 212 -50 555 272 69 37 chr3 77357350 77357596 -150166982 + MLT1I LTR MaLR 116 369 -40 2244 116 73 14 chr3 77357819 77358163 -150166415 + THE1B LTR MaLR 1 364 0 379 368 83 6 chr3 77358850 77359201 -150165377 + MARNA DNA Mariner 148 525 -61 205 288 0 55 chr3 77359217 77359290 -150165288 + L2 LINE L2 3245 3313 0 313 287 186 53 chr3 77360228 77360643 -150163935 - L1M2 LINE L1 -5703 1146 677 21 0 0 0 chr3 77361872 77361893 -150162685 + AT_rich Low_complexity Low_complexity 1 21 0 293 313 20 10 chr3 77361920 77362019 -150162559 + L2 LINE L2 2229 2328 -986 313 318 54 14 chr3 77362028 77362176 -150162402 + L2 LINE L2 2522 2675 -639 218 177 65 65 chr3 77362181 77362243 -150162335 + MER5B DNA MER1_type 1 62 -116 * 326 247 72 0 chr3 77362216 77362313 -150162265 - MER5A DNA MER1_type -75 114 11 454 349 67 36 chr3 77362331 77362669 -150161909 + L2 LINE L2 2708 3057 -256 462 308 170 37 chr3 77362826 77363524 -150161054 - L2 LINE L2 -1 3312 2534 2174 197 30 17 chr3 77363560 77364021 -150160557 - MLT1C LTR MaLR 0 467 1 1691 166 45 6 chr3 77364423 77364755 -150159823 + L1MB8 LINE L1 5828 6172 -6 2074 126 0 3 chr3 77364936 77365230 -150159348 - AluSg SINE Alu -17 293 1 388 276 67 0 chr3 77365358 77365463 -150159115 - MLT1L LTR MaLR -153 462 351 5693 105 155 92 chr3 77365476 77366930 -150157648 - pTR5 LTR ERV1 0 2438 741 586 267 163 4 chr3 77366980 77367220 -150157358 - MLT1L LTR MaLR -337 278 1 258 354 49 14 chr3 77367261 77367405 -150157173 + L2 LINE L2 1053 1201 -2113 2822 25 0 0 chr3 77367638 77367955 -150156623 + AluYb8 SINE Alu 2 318 0 1206 119 11 0 chr3 77367969 77368145 -150156433 + AluSg/x SINE Alu 119 296 -14 246 319 58 0 chr3 77368145 77368214 -150156364 + MER91A DNA MER1_type 124 196 0 396 200 0 0 chr3 77368218 77368303 -150156275 + CT-rich Low_complexity Low_complexity 2 86 0 185 268 0 18 chr3 77568971 77569027 -149955551 + MIR SINE MIR 21 75 -133 406 314 79 41 chr3 77569433 77569751 -149954827 - MLT1I LTR MaLR -8 401 72 701 190 11 78 chr3 77569763 77570032 -149954546 + LTR1 LTR ERV1 1 251 -534 711 168 30 15 chr3 77571535 77571666 -149952912 + AluJ SINE Alu 1 133 -169 341 276 12 59 chr3 77571744 77571914 -149952664 - MIR SINE MIR -94 168 7 264 328 0 0 chr3 77571929 77571996 -149952582 + MIR SINE MIR 31 97 -165 896 216 0 6 chr3 77575737 77576086 -149948492 + AluJ SINE Alu 136 483 0 210 191 48 0 chr3 77576086 77576128 -149948450 + G-rich Low_complexity Low_complexity 3 46 0 216 0 0 0 chr3 77579794 77579818 -149944760 + (A)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr3 77580649 77580671 -149943907 + AT_rich Low_complexity Low_complexity 1 22 0 367 232 76 91 chr3 77582779 77582977 -149941601 - L1MC5 LINE L1 -36 7925 7731 286 135 0 0 chr3 77582985 77583037 -149941541 - L1MB7 LINE L1 0 6184 6133 406 186 228 7 chr3 77584861 77585006 -149939572 + MIR3 SINE MIR 27 203 -5 294 29 0 0 chr3 77585116 77585151 -149939427 + (CA)n Simple_repeat Simple_repeat 2 36 0 1856 164 7 0 chr3 77585152 77585427 -149939151 - AluJb SINE Alu -35 277 1 1973 123 0 45 chr3 77586019 77586327 -149938251 - AluSx SINE Alu -18 294 1 180 77 0 0 chr3 77586644 77586670 -149937908 + (TTTTTA)n Simple_repeat Simple_repeat 3 28 0 201 74 0 0 chr3 77587055 77587082 -149937496 + (TG)n Simple_repeat Simple_repeat 2 28 0 394 268 134 17 chr3 77588306 77588485 -149936093 + MIR SINE MIR 62 261 -1 1918 160 10 13 chr3 77589488 77589794 -149934784 - AluJb SINE Alu -7 305 1 329 384 68 20 chr3 77590080 77590374 -149934204 + L2 LINE L2 2939 3246 -26 329 289 178 52 chr3 77591825 77592285 -149932293 - L1ME4a LINE L1 -254 5867 5350 237 178 0 0 chr3 77593101 77593146 -149931432 + (TG)n Simple_repeat Simple_repeat 2 46 0 4580 176 26 19 chr3 77594188 77595087 -149929491 - L1MB7 LINE L1 0 6184 5280 2280 116 0 0 chr3 77600021 77600322 -149924256 + AluSq SINE Alu 1 301 -12 2551 77 0 0 chr3 77602333 77602644 -149921934 - AluY SINE Alu 0 311 1 802 162 0 22 chr3 77604743 77604879 -149919699 - FLAM_C SINE Alu 0 133 1 818 193 32 73 chr3 77606890 77607005 -149917573 + MER3 DNA MER1_type 1 104 -105 2445 66 3 7 chr3 77607005 77607308 -149917270 + AluY SINE Alu 1 302 -9 818 193 32 73 chr3 77607308 77607410 -149917168 + MER3 DNA MER1_type 104 209 0 2854 116 14 38 chr3 77608190 77608324 -149916254 + L1MB3 LINE L1 5695 5831 -352 1859 146 0 36 chr3 77608324 77608625 -149915953 + AluJo SINE Alu 2 291 -21 2854 116 14 38 chr3 77608625 77608991 -149915587 + L1MB3 LINE L1 5831 6183 0 2376 94 3 7 chr3 77609000 77609308 -149915270 + AluSx SINE Alu 1 307 -5 1294 135 4 52 chr3 77611486 77611716 -149912862 - MER20 DNA MER1_type 0 219 1 978 107 8 0 chr3 77612551 77612682 -149911896 - AluSx SINE Alu -159 153 22 266 195 175 11 chr3 77612959 77613059 -149911519 - L1ME4a LINE L1 -14 6107 5995 396 286 78 86 chr3 77613074 77613319 -149911259 - L1ME4a LINE L1 -171 5950 5708 1879 154 22 0 chr3 77613332 77613635 -149910943 - AluSx SINE Alu 0 311 3 1784 161 111 17 chr3 77613919 77614272 -149910306 - MLT1B LTR MaLR 0 390 5 346 225 11 56 chr3 77614453 77614542 -149910036 - L2 LINE L2 -2 3311 3227 1710 186 8 26 chr3 77614547 77614929 -149909649 + MER96B DNA MER1_type? 2 376 -41 234 291 86 17 chr3 77614952 77615069 -149909509 - L2 LINE L2 -85 3228 3104 2132 139 10 0 chr3 77615630 77615931 -149908647 - AluSq SINE Alu -9 304 1 2048 149 3 0 chr3 77615943 77616245 -149908333 - AluSx SINE Alu -9 303 1 1299 183 58 0 chr3 77616309 77616550 -149908028 + AluJb SINE Alu 52 306 -6 303 284 114 0 chr3 77616556 77616644 -149907934 - MIR SINE MIR -116 146 49 188 296 167 68 chr3 77616693 77616825 -149907753 - MIR3 SINE MIR -46 162 18 324 352 123 18 chr3 77616882 77617109 -149907469 + MIR SINE MIR 2 252 -10 1977 147 34 0 chr3 77618074 77618366 -149906212 - AluJo SINE Alu -10 302 1 432 367 25 29 chr3 77618373 77618618 -149905960 - MIR SINE MIR -12 250 7 423 265 27 27 chr3 77618636 77618783 -149905795 + MIR SINE MIR 113 259 -3 259 253 0 71 chr3 77619067 77619166 -149905412 + L1ME LINE L1 5733 5824 -297 2223 102 0 10 chr3 77619425 77619720 -149904858 + AluSx SINE Alu 4 295 -17 230 318 71 52 chr3 77620952 77621106 -149903472 + MIR SINE MIR 32 188 -74 747 260 103 5 chr3 77621143 77621366 -149903212 + MIR SINE MIR 3 247 -15 185 242 136 15 chr3 77622496 77622562 -149902016 - MIR3 SINE MIR -14 194 121 223 250 73 15 chr3 77624188 77624256 -149900322 + MIR SINE MIR 71 142 -120 226 227 0 0 chr3 77624265 77624309 -149900269 - MIR SINE MIR -63 145 102 372 321 9 0 chr3 77624668 77624774 -149899804 + MER5A DNA MER1_type 4 110 -79 1825 80 47 18 chr3 77627305 77627579 -149896999 + L1MA2 LINE L1 6017 6298 -6 479 180 24 108 chr3 77627602 77627789 -149896789 - L1MB7 LINE L1 -30 6148 5966 2188 119 3 0 chr3 77627957 77628259 -149896319 + AluSq SINE Alu 1 303 -10 370 219 94 109 chr3 77629668 77629860 -149894718 - L1MC4 LINE L1 -1320 6722 6534 629 214 49 55 chr3 77629928 77630105 -149894473 - MER5A DNA MER1_type -10 168 2 330 270 98 74 chr3 77630957 77631120 -149893458 - L2 LINE L2 -92 3180 3014 210 233 0 17 chr3 77631292 77631352 -149893226 + C-rich Low_complexity Low_complexity 2 60 0 294 29 0 0 chr3 77632187 77632222 -149892356 + (TCC)n Simple_repeat Simple_repeat 2 36 0 458 332 20 20 chr3 77632624 77632826 -149891752 - MIR SINE MIR 0 262 61 567 280 149 0 chr3 77633744 77633958 -149890620 + MIR SINE MIR 9 254 -8 444 158 71 185 chr3 77634337 77634521 -149890057 + MER5B DNA MER1_type 1 163 -15 341 308 25 33 chr3 77636099 77636219 -149888359 + MIR SINE MIR 30 148 -60 296 266 64 9 chr3 77637662 77637771 -149886807 + MER103 DNA DNA 2 116 -50 4284 175 31 55 chr3 77638840 77639071 -149885507 - L1MD1 LINE L1 -18 6224 5989 1953 143 0 62 chr3 77639071 77639393 -149885185 - AluSx SINE Alu -10 302 1 4284 175 31 55 chr3 77639393 77639895 -149884683 - L1MD1 LINE L1 -253 5989 5525 2374 113 0 0 chr3 77639895 77640205 -149884373 - AluSx SINE Alu -2 310 1 4284 175 31 55 chr3 77640205 77640720 -149883858 - L1MD1 LINE L1 -717 5525 4999 186 288 175 25 chr3 77641378 77641458 -149883120 + MIR SINE MIR 24 115 -147 850 264 45 16 chr3 77641956 77642202 -149882376 + MIR SINE MIR 2 254 -8 190 0 67 0 chr3 77644476 77644506 -149880072 + (TTG)n Simple_repeat Simple_repeat 2 33 0 447 298 0 24 chr3 77644578 77644702 -149879876 - L2 LINE L2 -1 3312 3192 180 0 0 0 chr3 77644740 77644760 -149879818 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2191 153 88 18 chr3 77644761 77644858 -149879720 - L1MC2 LINE L1 -9 6335 6246 210 37 0 0 chr3 77644858 77644885 -149879693 + (CA)n Simple_repeat Simple_repeat 1 27 0 2191 153 88 18 chr3 77644885 77645232 -149879346 - L1MC2 LINE L1 -98 6246 5860 1068 299 26 37 chr3 77646446 77646901 -149877677 + L1ME3A LINE L1 5584 6033 -137 729 160 8 16 chr3 77647025 77647150 -149877428 - FLAM_C SINE Alu -18 125 2 227 61 0 0 chr3 77648079 77648112 -149876466 + MER117 DNA MER1_type 126 158 -39 1285 183 14 5 chr3 77648285 77648504 -149876074 + MER58A DNA MER1_type 4 224 0 489 255 19 62 chr3 77649478 77649601 -149874977 + MIR SINE MIR 26 142 -120 2267 145 19 6 chr3 77649601 77649960 -149874618 - MER47A DNA MER2_type -1 365 2 489 255 19 62 chr3 77649960 77649997 -149874581 + MIR SINE MIR 142 179 -83 210 206 159 0 chr3 77650853 77650916 -149873662 - MIR SINE MIR -146 116 44 213 250 135 58 chr3 77650979 77651073 -149873505 - L2 LINE L2 -503 2811 2707 2374 95 3 3 chr3 77651073 77651379 -149873199 - AluSp SINE Alu -7 306 1 4000 170 50 37 chr3 77651388 77651540 -149873038 - L1MB2 LINE L1 -2 6169 6020 2281 127 14 32 chr3 77651540 77651911 -149872667 + THE1B LTR MaLR 1 364 0 11826 75 27 22 chr3 77651911 77653483 -149871095 + THE1B-int LTR MaLR 1 1580 0 2480 120 14 25 chr3 77653483 77653851 -149870727 + THE1B LTR MaLR 1 364 0 4000 170 50 37 chr3 77653851 77654649 -149869929 - L1MB2 LINE L1 -150 6021 5207 397 185 43 11 chr3 77654660 77654752 -149869826 - L2 LINE L2 -600 2714 2620 2338 99 3 13 chr3 77656275 77656587 -149867991 + AluSc SINE Alu 1 309 0 246 224 26 13 chr3 77658869 77658945 -149865633 - L1ME2 LINE L1 0 6164 6088 2252 101 10 0 chr3 77660241 77660549 -149864029 - AluY SINE Alu 0 311 1 339 244 112 122 chr3 77665586 77665757 -149858821 - MIR SINE MIR -56 152 17 268 214 112 0 chr3 77666744 77666833 -149857745 + MER5A DNA MER1_type 47 145 -44 209 244 0 0 chr3 77667246 77667291 -149857287 + L2 LINE L2 3223 3267 -5 264 245 39 59 chr3 77669703 77669805 -149854773 + MER5A DNA MER1_type 88 187 -2 185 296 113 26 chr3 77670035 77670150 -149854428 + L3 LINE CR1 1342 1466 -111 1974 148 17 0 chr3 77670435 77670732 -149853846 - AluJb SINE Alu -10 302 1 698 286 58 0 chr3 77672197 77672386 -149852192 - MER58A DNA MER1_type -23 201 2 22 0 0 0 chr3 77674702 77674724 -149849854 + AT_rich Low_complexity Low_complexity 1 22 0 368 277 50 0 chr3 77675712 77675813 -149848765 + MER5A DNA MER1_type 4 109 -80 3373 193 36 11 chr3 77677724 77678438 -149846140 + L1MB8 LINE L1 5446 6177 -1 3810 176 72 19 chr3 77678438 77679531 -149845047 - L1MB7 LINE L1 -22 6660 5511 1895 192 62 42 chr3 77679532 77680109 -149844469 - L1MB7 LINE L1 -1428 5216 4628 1787 113 100 3 chr3 77680110 77680420 -149844158 + HSMAR2 DNA Mariner 962 1301 -1 969 224 66 7 chr3 77680420 77680723 -149843855 - L1MB7 LINE L1 -3522 3122 2802 5063 233 120 24 chr3 77680724 77682087 -149842491 - L1MB7 LINE L1 -3884 2762 1531 2419 79 0 32 chr3 77682087 77682403 -149842175 - AluY SINE Alu -5 306 1 5063 233 120 24 chr3 77682403 77683512 -149841066 - L1MB7 LINE L1 -5115 1531 14 2158 122 10 0 chr3 77684467 77684762 -149839816 + AluSx SINE Alu 1 298 -14 216 0 0 0 chr3 77686246 77686270 -149838308 + (TG)n Simple_repeat Simple_repeat 1 24 0 13257 139 65 16 chr3 77693472 77695329 -149829249 - Tigger1 DNA MER2_type 0 2418 426 1830 153 21 0 chr3 77695329 77695616 -149828962 - AluJo SINE Alu -19 293 1 13257 139 65 16 chr3 77695616 77696064 -149828514 - Tigger1 DNA MER2_type -1992 426 1 1863 152 24 7 chr3 77698106 77698403 -149826175 - AluJo SINE Alu -10 302 1 230 313 148 9 chr3 77700119 77700234 -149824344 - L3 LINE CR1 -1053 524 394 209 290 129 11 chr3 77700323 77700416 -149824162 + MIR SINE MIR 37 140 -122 1913 150 0 25 chr3 77701163 77701483 -149823095 - AluJo SINE Alu 0 312 1 315 157 0 0 chr3 77702479 77702549 -149822029 + (TCTG)n Simple_repeat Simple_repeat 2 71 0 214 308 132 11 chr3 77702691 77702782 -149821796 + MIR SINE MIR 31 132 -130 * 464 280 67 0 chr3 77702775 77702925 -149821653 - MIR SINE MIR -90 172 13 267 241 196 27 chr3 77702937 77703049 -149821529 + MIR SINE MIR 117 247 -15 219 309 127 36 chr3 77705582 77705747 -149818831 - MIR SINE MIR -60 202 23 3997 232 53 37 chr3 77707617 77708218 -149816360 - L1ME1 LINE L1 -93 6073 5483 2124 99 6 35 chr3 77708218 77708532 -149816046 - AluSx SINE Alu -2 310 6 3997 232 53 37 chr3 77708532 77709876 -149814702 - L1ME1 LINE L1 -683 5483 4099 240 308 42 42 chr3 77711318 77711438 -149813140 - MIR SINE MIR -21 241 122 767 164 0 0 chr3 77711438 77711554 -149813024 + FLAM_C SINE Alu 12 127 -16 239 263 105 0 chr3 77711565 77711641 -149812937 - MIR SINE MIR -140 122 39 415 253 155 46 chr3 77712190 77712384 -149812194 - MIR SINE MIR -13 249 35 1521 173 8 8 chr3 77712805 77713065 -149811513 - AluJo SINE Alu -30 282 23 608 158 147 90 chr3 77713236 77713291 -149811287 - L1MD3 LINE L1 -16 7979 7929 1811 153 3 7 chr3 77713291 77713578 -149811000 + AluJb SINE Alu 3 288 -24 608 158 147 90 chr3 77713578 77713699 -149810879 - L1MD3 LINE L1 -66 7929 7793 1794 150 10 29 chr3 77715193 77715499 -149809079 - THE1B LTR MaLR 0 364 65 696 304 41 16 chr3 77716717 77716960 -149807618 + MIR SINE MIR 14 262 0 289 295 36 43 chr3 77717067 77717206 -149807372 + MIR SINE MIR 106 243 -19 386 247 43 0 chr3 77717465 77717558 -149807020 + L2 LINE L2 3150 3246 -26 282 175 82 21 chr3 77717558 77717655 -149806923 + L1MA8 LINE L1 6210 6312 0 188 354 0 0 chr3 77717707 77717755 -149806823 - L2 LINE L2 -337 2977 2930 189 94 0 0 chr3 77717764 77717796 -149806782 + (A)n Simple_repeat Simple_repeat 1 32 0 970 298 156 35 chr3 77717810 77717990 -149806588 - L2 LINE L2 -411 2903 2746 1257 165 180 23 chr3 77717990 77718251 -149806327 - AluJb SINE Alu 0 302 1 970 298 156 35 chr3 77718251 77718718 -149805860 - L2 LINE L2 -568 2746 2178 198 0 0 0 chr3 77719503 77719525 -149805053 + (CA)n Simple_repeat Simple_repeat 1 22 0 252 354 71 22 chr3 77719729 77719955 -149804623 - L2 LINE L2 -749 2565 2329 2709 212 86 28 chr3 77720234 77720975 -149803603 + L1ME1 LINE L1 5378 6161 -5 642 258 47 33 chr3 77721769 77721982 -149802596 + MER112 DNA MER1_type 5 220 -40 195 42 0 0 chr3 77722066 77722090 -149802488 + (TTG)n Simple_repeat Simple_repeat 1 24 0 6609 89 7 5 chr3 77722090 77723177 -149801401 - L1PA10 LINE L1 -20 6148 5059 456 19 0 0 chr3 77723456 77723509 -149801069 + (CA)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr3 77723864 77723886 -149800692 + AT_rich Low_complexity Low_complexity 1 22 0 1550 163 72 7 chr3 77724028 77724305 -149800273 - AluJb SINE Alu -15 297 3 452 250 11 51 chr3 77724600 77724854 -149799724 + GA-rich Low_complexity Low_complexity 1 243 0 581 257 110 28 chr3 77725145 77725363 -149799215 - MIR SINE MIR -21 241 6 2024 92 0 0 chr3 77725743 77725994 -149798584 - AluSx SINE Alu -18 294 44 192 316 0 0 chr3 77727713 77727770 -149796808 + MIR3 SINE MIR 139 195 -13 2433 202 45 130 chr3 77728904 77730844 -149793734 + L1M3 LINE L1 3914 5653 -530 567 206 105 10 chr3 77730842 77731065 -149793513 + L1MB4 LINE L1 5193 5435 -735 * 2360 188 33 73 chr3 77731069 77731703 -149792875 + L1MB4 LINE L1 5572 6180 0 1357 231 177 9 chr3 77731721 77732315 -149792263 + L1ME3 LINE L1 5435 6154 -8 366 189 24 55 chr3 77732366 77732493 -149792085 + L1MC5 LINE L1 7806 7928 -33 222 311 0 0 chr3 77734258 77734319 -149790259 + CT-rich Low_complexity Low_complexity 1 61 0 194 324 148 37 chr3 77734482 77734590 -149789988 + L2 LINE L2 3153 3272 0 334 261 49 141 chr3 77735345 77735603 -149788975 - MLT1I LTR MaLR -17 392 165 1977 160 0 3 chr3 77735603 77735916 -149788662 + AluSx SINE Alu 1 312 0 334 261 49 141 chr3 77735916 77735963 -149788615 - MLT1I LTR MaLR -244 165 115 251 199 107 46 chr3 77737097 77737228 -149787350 + HAL1b LINE L1 346 484 -864 842 159 0 0 chr3 77737507 77737639 -149786939 + FLAM_C SINE Alu 1 132 -1 313 208 39 13 chr3 77737689 77737766 -149786812 - HsTC2 DNA Tc2 -1819 79 1 2163 114 0 19 chr3 77737981 77738296 -149786282 + AluSx SINE Alu 1 309 -3 25 31 0 0 chr3 77739193 77739225 -149785353 + AT_rich Low_complexity Low_complexity 1 32 0 254 205 51 26 chr3 77739809 77739887 -149784691 - Charlie7 DNA MER1_type -2006 606 527 790 252 33 14 chr3 77739887 77740097 -149784481 + L2 LINE L2 2293 2506 -808 241 264 0 0 chr3 77740198 77740251 -149784327 + L2 LINE L2 3251 3303 -10 409 147 0 0 chr3 77740371 77740439 -149784139 + AluJ/FLAM SINE Alu 16 83 -229 216 254 68 0 chr3 77741141 77741200 -149783378 - MIR SINE MIR 0 262 200 237 271 78 39 chr3 77742156 77742285 -149782293 - L1MC4 LINE L1 -766 7276 7143 258 128 21 0 chr3 77742462 77742509 -149782069 + L1MA10 LINE L1 6263 6310 -24 729 325 73 54 chr3 77743972 77744875 -149779703 + L2 LINE L2 2296 3268 -4 376 246 119 33 chr3 77745178 77745377 -149779201 + MER34C LTR ERV1 385 581 -4 2525 168 24 162 chr3 77745448 77745989 -149778589 + LTR8 LTR ERV1 1 615 -76 468 0 0 0 chr3 77745989 77746041 -149778537 + (CA)n Simple_repeat Simple_repeat 2 53 0 2525 168 24 162 chr3 77746041 77746086 -149778492 + LTR8 LTR ERV1 615 665 -26 1811 155 4 0 chr3 77746086 77746363 -149778215 - 7SLRNA srpRNA srpRNA -41 279 2 2525 168 24 162 chr3 77746363 77746400 -149778178 + LTR8 LTR ERV1 665 493 -198 1518 167 4 29 chr3 77746400 77746675 -149777903 - AluJb SINE Alu -24 288 21 2525 168 24 162 chr3 77746675 77746851 -149777727 + LTR8 LTR ERV1 492 691 0 837 209 0 0 chr3 77748110 77748263 -149776315 + MSTD LTR MaLR 1 153 -243 721 165 17 0 chr3 77748283 77748398 -149776180 + MSTD LTR MaLR 280 396 0 643 210 87 0 chr3 77748933 77749071 -149775507 - MER5A DNA MER1_type -9 180 31 897 165 6 24 chr3 77749136 77749300 -149775278 - MLT1A1 LTR MaLR -204 161 1 3434 170 65 20 chr3 77749425 77750131 -149774447 + L1MB4 LINE L1 5442 6179 -1 2159 88 29 0 chr3 77750201 77750474 -149774104 + AluSp SINE Alu 29 309 -4 1474 166 55 17 chr3 77751270 77751559 -149773019 + AluJo SINE Alu 1 300 -12 21 0 0 0 chr3 77751559 77751580 -149772998 + AT_rich Low_complexity Low_complexity 1 21 0 23751 180 21 32 chr3 77751592 77757240 -149767338 + L1PA10 LINE L1 10 5612 -849 189 0 0 0 chr3 77757240 77757261 -149767317 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 30265 115 16 62 chr3 77757261 77763740 -149760838 + L1PA8 LINE L1 1 6172 0 1851 97 15 12 chr3 77763748 77763946 -149760632 + L1PA10 LINE L1 5606 5802 -681 2076 147 10 0 chr3 77763946 77764253 -149760325 + AluSg SINE Alu 1 310 0 1851 97 15 12 chr3 77764253 77764775 -149759803 + L1PA10 LINE L1 5802 6482 -1 2003 229 43 77 chr3 77765917 77766568 -149758010 + MLT1E1 LTR MaLR 24 652 -2 275 349 83 0 chr3 77766741 77766873 -149757705 - MIR3 SINE MIR -27 181 39 468 194 39 0 chr3 77767148 77767251 -149757327 + MER20 DNA MER1_type 56 162 -57 596 308 15 10 chr3 77767761 77767959 -149756619 - Charlie8 DNA MER1_type -2141 276 78 953 257 62 4 chr3 77768204 77768430 -149756148 - MIR SINE MIR -10 252 14 204 67 0 0 chr3 77769951 77769981 -149754597 + (A)n Simple_repeat Simple_repeat 1 30 0 24 32 0 0 chr3 77770265 77770296 -149754282 + AT_rich Low_complexity Low_complexity 1 31 0 1871 156 10 3 chr3 77770736 77771024 -149753554 + AluSx SINE Alu 2 291 -21 300 299 29 15 chr3 77771044 77771181 -149753397 + (CATA)n Simple_repeat Simple_repeat 3 141 0 888 219 33 0 chr3 77772045 77772228 -149752350 - MER5A DNA MER1_type 0 189 1 1241 195 14 0 chr3 77772398 77772613 -149751965 - MER58A DNA MER1_type -1 223 6 298 320 30 0 chr3 77772614 77772714 -149751864 - MIR SINE MIR -66 142 40 2280 101 0 10 chr3 77772873 77773179 -149751399 - AluSq SINE Alu -10 303 1 26 30 0 0 chr3 77773532 77773565 -149751013 + AT_rich Low_complexity Low_complexity 1 33 0 2232 102 7 0 chr3 77774088 77774381 -149750197 - AluSg SINE Alu -13 297 3 247 202 11 38 chr3 77774553 77774741 -149749837 + A-rich Low_complexity Low_complexity 1 182 0 1766 164 0 14 chr3 77774810 77774941 -149749637 + AluSg SINE Alu 3 134 -176 2048 95 7 0 chr3 77774941 77775214 -149749364 + AluY SINE Alu 37 311 0 1766 164 0 14 chr3 77775214 77775375 -149749203 + AluSg SINE Alu 134 291 -19 219 146 0 0 chr3 77775722 77775763 -149748815 + (A)n Simple_repeat Simple_repeat 1 41 0 25 31 0 0 chr3 77775863 77775895 -149748683 + AT_rich Low_complexity Low_complexity 1 32 0 1156 117 5 51 chr3 77776058 77776255 -149748323 + L1PA13 LINE L1 5976 6163 0 825 112 0 0 chr3 77776407 77776514 -149748064 + U6 snRNA snRNA 1 107 0 2333 125 93 8 chr3 77776514 77777018 -149747560 + L1P3 LINE L1 1647 2320 -4141 1183 103 0 0 chr3 77777130 77777295 -149747283 + AluY SINE Alu 135 299 -12 203 299 78 0 chr3 77779189 77779266 -149745312 + L2 LINE L2 3230 3312 -1 367 143 0 0 chr3 77779823 77779879 -149744699 + FLAM_A SINE Alu 36 91 -42 794 239 6 17 chr3 77780045 77780225 -149744353 - MER58A DNA MER1_type -7 217 40 287 336 104 46 chr3 77781043 77781716 -149742862 - L2 LINE L2 -475 2839 2128 1048 176 22 146 chr3 77781944 77782133 -149742445 + MER33 DNA MER1_type 1 123 -2462 550 190 130 0 chr3 77782133 77782233 -149742345 - FLAM_A SINE Alu -17 116 4 1048 176 22 146 chr3 77782233 77782413 -149742165 + MER33 DNA MER1_type 123 324 0 241 197 70 28 chr3 77782721 77782792 -149741786 - MLT1L LTR MaLR -346 269 196 1508 197 14 4 chr3 77784059 77784338 -149740240 - AluJo SINE Alu -30 282 1 451 252 16 24 chr3 77785683 77785806 -149738772 + FLAM_A SINE Alu 10 131 -11 214 248 129 40 chr3 77786190 77786291 -149738287 - MIR SINE MIR -65 143 34 1278 234 116 32 chr3 77787189 77787534 -149737044 - MLT1D LTR MaLR 0 505 110 2143 86 31 14 chr3 77787534 77787826 -149736752 - AluY SINE Alu -14 297 1 1278 234 116 32 chr3 77787826 77787946 -149736632 - MLT1D LTR MaLR -395 110 1 202 350 0 0 chr3 77788151 77788211 -149736367 + MIR SINE MIR 75 134 -128 304 362 71 31 chr3 77788291 77788515 -149736063 - MIR SINE MIR -8 254 22 193 208 21 21 chr3 77789690 77789738 -149734840 + L2 LINE L2 2672 2719 -595 451 212 53 48 chr3 77789927 77790116 -149734462 + L1MA9 LINE L1 6089 6278 -34 880 200 109 3 chr3 77790250 77790580 -149733998 - Tigger5 DNA MER2_type 0 2323 2 1430 214 11 14 chr3 77793373 77793654 -149730924 + AluJo SINE Alu 1 280 -32 263 266 0 0 chr3 77793670 77793734 -149730844 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 2338 76 0 10 chr3 77793819 77794121 -149730457 + AluY SINE Alu 1 299 -12 340 242 140 0 chr3 77794136 77794250 -149730328 + FLAM_A SINE Alu 1 115 -18 1886 148 20 20 chr3 77794822 77795179 -149729399 + L1MB8 LINE L1 5813 6169 -9 718 197 0 7 chr3 77795774 77795916 -149728662 + FLAM_C SINE Alu 1 141 -2 2422 74 0 16 chr3 77795980 77796291 -149728287 - AluY SINE Alu -5 306 1 481 293 88 4 chr3 77796421 77796684 -149727894 - L1M4 LINE L1 -3408 2738 2454 1067 242 94 9 chr3 77796811 77797376 -149727202 - MLT2F LTR ERVL -8 655 1 31 26 0 0 chr3 77797567 77797605 -149726973 + AT_rich Low_complexity Low_complexity 1 38 0 1842 94 20 0 chr3 77798401 77798656 -149725922 + AluY SINE Alu 52 311 0 1164 114 0 0 chr3 77798656 77798814 -149725764 + AluSg/x SINE Alu 133 290 -22 452 149 23 0 chr3 77799506 77799593 -149724985 + L1PA13 LINE L1 3879 3967 -2179 * 2652 167 15 15 chr3 77799587 77800132 -149724446 + L1PA13 LINE L1 4210 4754 -1392 3263 125 6 18 chr3 77800132 77800675 -149723903 + L1PA13 LINE L1 5627 6163 0 769 112 0 0 chr3 77800827 77800934 -149723644 + U6 snRNA snRNA 1 107 0 25587 94 11 2 chr3 77800934 77805711 -149718867 + L1PA7 LINE L1 1323 6141 -13 2462 77 0 0 chr3 77806734 77807033 -149717545 - AluY SINE Alu -12 299 1 1635 154 61 4 chr3 77807085 77807364 -149717214 + AluSx SINE Alu 1 295 -17 1728 222 53 10 chr3 77807520 77808142 -149716436 + L1M3 LINE L1 4822 5464 -716 1811 138 0 0 chr3 77808288 77808548 -149716030 + AluSq SINE Alu 1 260 -53 24 0 0 0 chr3 77808763 77808787 -149715791 + AT_rich Low_complexity Low_complexity 1 24 0 414 236 46 29 chr3 77809130 77809304 -149715274 - L1MC4 LINE L1 -1 8041 7865 521 282 81 12 chr3 77809368 77809710 -149714868 - L1ME3 LINE L1 -302 5860 5494 1634 183 4 11 chr3 77809710 77809983 -149714595 - AluJo SINE Alu -41 271 1 369 224 112 41 chr3 77810040 77810210 -149714368 + L1MD2 LINE L1 4364 4545 -1601 2082 223 92 39 chr3 77810340 77810471 -149714107 + L1MD2 LINE L1 5427 5550 -809 1774 167 27 7 chr3 77810471 77810770 -149713808 + AluJb SINE Alu 1 305 -7 2082 223 92 39 chr3 77810770 77811314 -149713264 + L1MD2 LINE L1 5550 6138 -221 1439 226 126 116 chr3 77811421 77811602 -149712976 + L1MC4 LINE L1 6712 6890 -1152 2193 116 0 32 chr3 77811602 77811737 -149712841 + AluSx SINE Alu 1 139 -173 2875 13 0 0 chr3 77811737 77812051 -149712527 + AluYb8 SINE Alu 1 314 -4 2193 116 0 32 chr3 77812051 77812225 -149712353 + AluSx SINE Alu 139 300 -12 1439 226 126 116 chr3 77812225 77813355 -149711223 + L1MC4 LINE L1 6890 8036 -6 192 282 90 39 chr3 77813705 77813783 -149710795 + MIR SINE MIR 168 249 -13 220 214 57 43 chr3 77814642 77814712 -149709866 - MIR SINE MIR -188 74 4 255 287 29 85 chr3 77815460 77815732 -149708846 + HAL1 LINE L1 2245 2501 -6 21 36 0 0 chr3 77815738 77815766 -149708812 + AT_rich Low_complexity Low_complexity 1 28 0 2046 211 104 9 chr3 77815851 77816416 -149708162 - L1MC4a LINE L1 -21 7787 7169 821 156 66 0 chr3 77816418 77816703 -149707875 - L1MA9 LINE L1 -21 6291 5892 436 210 35 28 chr3 77816741 77816884 -149707694 + L1MC5 LINE L1 7706 7849 -112 276 281 248 14 chr3 77817696 77817906 -149706672 + MIR SINE MIR 1 259 -3 450 258 47 16 chr3 77818491 77818619 -149705959 - L2 LINE L2 -2 3311 3180 9896 25 3 0 chr3 77818634 77820569 -149704009 - L1PA3 LINE L1 0 6155 4216 5737 44 8 0 chr3 77820569 77821316 -149703262 + L1PA3 LINE L1 3461 4213 -1933 21 0 0 0 chr3 77821570 77821591 -149702987 + AT_rich Low_complexity Low_complexity 1 21 0 506 295 195 0 chr3 77821736 77821946 -149702632 + MIR SINE MIR 1 251 -11 329 295 54 62 chr3 77822564 77822822 -149701756 + MLT1J LTR MaLR 237 492 -19 269 375 22 15 chr3 77824057 77824193 -149700385 - L2 LINE L2 -11 3302 3166 199 268 70 14 chr3 77824926 77824997 -149699581 - MIR SINE MIR -126 136 62 1711 111 103 40 chr3 77825017 77825368 -149699210 - THE1C LTR MaLR -2 373 1 324 306 31 0 chr3 77825418 77825516 -149699062 - MIR SINE MIR -5 257 157 732 251 198 20 chr3 77825526 77825965 -149698613 + L1MC4a LINE L1 5343 5859 -1949 182 154 26 0 chr3 77826748 77826787 -149697791 + L2 LINE L2 2927 2966 -348 189 0 0 0 chr3 77827450 77827471 -149697107 + (A)n Simple_repeat Simple_repeat 1 21 0 1925 107 35 28 chr3 77828118 77828407 -149696171 + AluSq SINE Alu 7 297 -16 2139 100 11 98 chr3 77828491 77828860 -149695718 + MER1B DNA MER1_type 1 337 0 230 294 39 69 chr3 77828922 77829024 -149695554 + MIR SINE MIR 23 121 -87 1967 145 26 0 chr3 77829145 77829449 -149695129 + AluJb SINE Alu 1 312 0 1762 181 3 13 chr3 78030928 78031242 -149493336 - AluJo SINE Alu -1 311 1 1126 146 6 0 chr3 78031413 78031578 -149493000 - AluJb SINE Alu -11 301 136 1931 157 3 13 chr3 78031591 78031903 -149492675 - AluJo SINE Alu -3 309 1 305 286 0 0 chr3 78032039 78032123 -149492455 - MIR3 SINE MIR -39 169 86 1876 238 80 43 chr3 78032282 78032884 -149491694 - MLT1E2 LTR MaLR 0 626 3 181 300 45 27 chr3 78033013 78033123 -149491455 + L2 LINE L2 2695 2806 -508 245 212 91 0 chr3 78033270 78033336 -149491242 + LTR45 LTR ERV1 73 144 -381 220 200 15 46 chr3 78033343 78033408 -149491170 + MER5A DNA MER1_type 25 87 -102 701 203 13 13 chr3 78033408 78033561 -149491017 + LTR45 LTR ERV1 373 525 0 352 344 12 6 chr3 78033561 78033721 -149490857 + L2 LINE L2 2899 3059 -213 549 226 58 26 chr3 78033808 78033963 -149490615 - MLT1H1 LTR MaLR -7 583 424 768 249 105 12 chr3 78033996 78034259 -149490319 - MLT1H1 LTR MaLR -298 257 9 190 254 16 63 chr3 78034353 78034416 -149490162 + L2 LINE L2 3213 3272 0 354 272 194 19 chr3 78035082 78035288 -149489290 + MIR SINE MIR 20 261 -1 1314 198 82 41 chr3 78035608 78035722 -149488856 + MER89 LTR ERV1 166 274 -285 2340 84 3 7 chr3 78035722 78036020 -149488558 + AluSp SINE Alu 3 299 -14 1314 198 82 41 chr3 78036020 78036220 -149488358 + MER89 LTR ERV1 274 493 -66 2041 211 64 2 chr3 78036220 78036655 -149487923 - MLT1C LTR MaLR 0 467 6 374 276 68 31 chr3 78036778 78036941 -149487637 - MLT1J2 LTR MaLR -9 441 273 344 271 42 0 chr3 78036944 78037040 -149487538 - MLT1J2 LTR MaLR -306 144 45 396 277 69 48 chr3 78037482 78037670 -149486908 + MIR SINE MIR 9 200 -62 2413 107 16 40 chr3 78038421 78038794 -149485784 + THE1B LTR MaLR 1 364 0 1733 171 0 20 chr3 78039121 78039413 -149485165 + AluJb SINE Alu 1 286 -26 357 224 13 0 chr3 78039505 78039581 -149484997 + MER51A LTR ERV1 471 547 -87 468 303 54 47 chr3 78039871 78040188 -149484390 - L2 LINE L2 -31 3282 2964 595 172 99 7 chr3 78040595 78040746 -149483832 + MIR SINE MIR 58 222 -40 278 280 43 11 chr3 78040768 78040861 -149483717 - MER5A DNA MER1_type -27 162 67 3887 181 52 24 chr3 78041164 78041966 -149482612 + LTR1B LTR ERV1 2 826 0 1053 238 29 68 chr3 78042129 78042440 -149482138 - MER102b DNA MER1_type -22 319 21 457 186 21 31 chr3 78042581 78042678 -149481900 - MER5B DNA MER1_type -8 170 75 280 297 203 0 chr3 78044258 78044406 -149480172 + MIR SINE MIR 20 197 -65 490 259 37 7 chr3 78044544 78044679 -149479899 + MER91C DNA MER1_type 2 140 0 441 180 0 133 chr3 78044818 78044946 -149479632 + MER58A DNA MER1_type 37 147 0 * 1205 151 26 43 chr3 78044941 78045173 -149479405 + Tigger2a DNA MER2_type 2 229 -205 1677 152 12 64 chr3 78045173 78045502 -149479076 - AluJb SINE Alu 0 312 1 407 243 124 130 chr3 78045503 78045948 -149478630 + L2 LINE L2 535 976 -2338 2153 119 0 7 chr3 78045981 78046276 -149478302 + AluSq SINE Alu 1 293 -20 14015 121 22 77 chr3 78046340 78046933 -149477645 + Tigger1 DNA MER2_type 20 644 -1774 1976 157 3 3 chr3 78046933 78047245 -149477333 + AluJb SINE Alu 1 312 0 14015 121 22 77 chr3 78047245 78047836 -149476742 + Tigger1 DNA MER2_type 644 1266 -1152 1037 76 15 0 chr3 78047836 78047967 -149476611 + AluY SINE Alu 1 133 -178 14015 121 22 77 chr3 78047967 78049188 -149475390 + Tigger1 DNA MER2_type 1266 2418 0 1137 255 117 17 chr3 78049229 78049691 -149474887 + L2 LINE L2 1535 2042 -1272 318 281 71 59 chr3 78049873 78050058 -149474520 + MIR SINE MIR 8 193 -68 238 146 0 62 chr3 78050085 78050133 -149474445 - Charlie8 DNA MER1_type -1005 1412 1368 1824 153 3 3 chr3 78050627 78050935 -149473643 + AluJb SINE Alu 1 308 0 524 263 27 47 chr3 78050935 78051114 -149473464 + MIR SINE MIR 58 232 -30 572 181 48 0 chr3 78051193 78051298 -149473280 - MER81 DNA DNA 0 114 5 381 235 12 0 chr3 78051483 78051568 -149473010 - L2 LINE L2 0 3313 3228 1155 198 132 89 chr3 78052279 78052773 -149471805 - MLT1H1 LTR MaLR 0 555 41 2386 100 0 0 chr3 78053258 78053557 -149471021 - AluSx SINE Alu -13 299 1 239 313 0 0 chr3 78053692 78053759 -149470819 - L2 LINE L2 -4 3309 3243 212 304 144 17 chr3 78053903 78054084 -149470494 + MIR SINE MIR 59 262 0 282 209 149 0 chr3 78054342 78054409 -149470169 + MIR SINE MIR 80 156 -106 2079 142 0 3 chr3 78054459 78054762 -149469816 - AluSx SINE Alu -10 302 1 221 273 0 15 chr3 78054789 78054855 -149469723 + MIR SINE MIR 48 112 -150 2401 103 0 0 chr3 78056023 78056333 -149468245 - AluSq SINE Alu -3 310 1 278 293 81 0 chr3 78056333 78056432 -149468146 - MIR SINE MIR -62 146 40 21 0 0 0 chr3 78058080 78058101 -149466477 + AT_rich Low_complexity Low_complexity 1 21 0 1965 99 6 58 chr3 78058624 78058936 -149465642 - AluSx SINE Alu -16 296 1 21 89 0 0 chr3 78059623 78059679 -149464899 + GC_rich Low_complexity Low_complexity 1 56 0 24 0 0 0 chr3 78060054 78060078 -149464500 + GC_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr3 78060218 78060240 -149464338 + GC_rich Low_complexity Low_complexity 1 22 0 31 26 0 0 chr3 78060396 78060434 -149464144 + GC_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr3 78062128 78062150 -149462428 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr3 78062981 78063005 -149461573 + (T)n Simple_repeat Simple_repeat 1 24 0 196 50 0 75 chr3 78066679 78066719 -149457859 + (TTCCC)n Simple_repeat Simple_repeat 5 41 0 * 895 216 0 6 chr3 78066713 78067062 -149457516 - AluJ SINE Alu 0 483 136 22 35 0 0 chr3 78068946 78068975 -149455603 + AT_rich Low_complexity Low_complexity 1 29 0 343 270 206 56 chr3 78069001 78069360 -149455218 - L1ME LINE L1 -359 5762 5350 237 178 0 0 chr3 78070176 78070221 -149454357 + (TG)n Simple_repeat Simple_repeat 2 46 0 4580 176 26 19 chr3 78071263 78072162 -149452416 - L1MB7 LINE L1 0 6184 5280 2280 116 0 0 chr3 78077095 78077396 -149447182 + AluSq SINE Alu 1 301 -12 2551 77 0 0 chr3 78079407 78079718 -149444860 - AluY SINE Alu 0 311 1 802 162 0 22 chr3 78081818 78081954 -149442624 - AluJ SINE Alu -169 133 1 818 193 32 73 chr3 78083965 78084080 -149440498 + MER3 DNA MER1_type 1 104 -105 2445 66 3 7 chr3 78084080 78084383 -149440195 + AluY SINE Alu 1 302 -9 818 193 32 73 chr3 78084383 78084485 -149440093 + MER3 DNA MER1_type 104 209 0 2854 116 14 38 chr3 78085266 78085400 -149439178 + L1MB3 LINE L1 5695 5831 -352 1859 146 0 36 chr3 78085400 78085701 -149438877 + AluJo SINE Alu 2 291 -21 2854 116 14 38 chr3 78085701 78086067 -149438511 + L1MB3 LINE L1 5831 6183 0 2376 94 3 7 chr3 78086076 78086384 -149438194 + AluSx SINE Alu 1 307 -5 1294 135 4 52 chr3 78088562 78088792 -149435786 - MER20 DNA MER1_type 0 219 1 969 107 8 0 chr3 78089627 78089758 -149434820 - AluSx SINE Alu -159 153 22 266 191 180 11 chr3 78090046 78090135 -149434443 - L1ME4a LINE L1 -23 6098 5995 1872 166 20 3 chr3 78090411 78090713 -149433865 - AluSx SINE Alu -3 309 3 1745 161 111 17 chr3 78090997 78091350 -149433228 - MLT1B LTR MaLR 0 390 5 303 225 11 56 chr3 78091531 78091620 -149432958 - L2 LINE L2 -2 3311 3227 1807 186 8 26 chr3 78091625 78092007 -149432571 + MER96B DNA MER1_type? 2 376 -41 184 291 86 17 chr3 78092030 78092147 -149432431 - L2 LINE L2 -85 3228 3104 2107 135 10 0 chr3 78092712 78093008 -149431570 - AluSq SINE Alu -14 299 1 2002 146 7 0 chr3 78093020 78093321 -149431257 - AluSx SINE Alu -9 303 1 1262 183 58 0 chr3 78093385 78093626 -149430952 + AluJb SINE Alu 52 306 -6 271 284 114 0 chr3 78093632 78093720 -149430858 - MIR SINE MIR -116 146 49 264 374 7 19 chr3 78093958 78094113 -149430465 + MIR SINE MIR 2 154 -108 1950 147 34 0 chr3 78095149 78095441 -149429137 - AluJo SINE Alu -10 302 1 342 367 25 29 chr3 78095448 78095693 -149428885 - MIR SINE MIR -12 250 7 377 264 31 16 chr3 78095711 78095840 -149428738 + MIR SINE MIR 113 243 -19 266 261 10 68 chr3 78096103 78096241 -149428337 + L1MC2 LINE L1 5696 5824 -297 2211 97 0 10 chr3 78096500 78096790 -149427788 + AluSx SINE Alu 4 290 -22 182 307 51 58 chr3 78098042 78098179 -149426399 + MIR SINE MIR 53 188 -74 645 248 108 5 chr3 78098225 78098439 -149426139 + MIR SINE MIR 12 247 -15 34 42 0 0 chr3 78100755 78100803 -149423775 + AT_rich Low_complexity Low_complexity 1 48 0 3927 161 25 4 chr3 78101038 78101753 -149422825 - L1MB4 LINE L1 0 6180 5451 641 280 30 43 chr3 78101944 78102176 -149422402 + MIR SINE MIR 7 235 -27 196 198 20 139 chr3 78102241 78102289 -149422289 + MER5B DNA MER1_type 70 101 -77 1932 161 0 3 chr3 78102289 78102580 -149421998 - AluSx SINE Alu -22 290 1 196 198 20 139 chr3 78102580 78102632 -149421946 + MER5B DNA MER1_type 101 158 -20 441 233 195 50 chr3 78103888 78103946 -149420632 - L2 LINE L2 0 3313 3265 2456 156 84 6 chr3 78103946 78104421 -149420157 + L1MC2 LINE L1 5833 6344 0 441 233 195 50 chr3 78104421 78104705 -149419873 - L2 LINE L2 -48 3265 2921 391 289 145 13 chr3 78106539 78106698 -149417880 - MER5A DNA MER1_type 0 189 10 1342 69 123 5 chr3 78106745 78106949 -149417629 - MER30 DNA MER1_type -2 228 1 415 305 16 0 chr3 78106980 78107108 -149417470 + MIR SINE MIR 79 208 -54 476 205 5 142 chr3 78107123 78107313 -149417265 - MLT1K LTR MaLR -15 573 410 201 300 0 14 chr3 78107314 78107384 -149417194 + CT-rich Low_complexity Low_complexity 2 70 0 443 306 23 6 chr3 78107771 78107944 -149416634 + MIR3 SINE MIR 32 207 -1 2510 79 0 0 chr3 78108086 78108389 -149416189 - AluY SINE Alu -8 303 1 1916 150 0 58 chr3 78108908 78109235 -149415343 - AluJb SINE Alu -4 308 1 185 295 161 40 chr3 78109568 78109756 -149414822 + L2 LINE L2 2508 2672 -642 2419 96 48 25 chr3 78109756 78110112 -149414466 + THE1B LTR MaLR 1 364 0 185 295 161 40 chr3 78110112 78110252 -149414326 + L2 LINE L2 2672 2876 -438 261 338 14 0 chr3 78110560 78110699 -149413879 + MIR SINE MIR 122 262 0 441 264 9 0 chr3 78110719 78110825 -149413753 + L2 LINE L2 3207 3313 0 270 136 0 0 chr3 78111234 78111278 -149413300 + (A)n Simple_repeat Simple_repeat 1 44 0 462 214 68 0 chr3 78111518 78111635 -149412943 - MIR3 SINE MIR -2 206 82 389 312 230 19 chr3 78111671 78112049 -149412529 - L2 LINE L2 -1 3312 2855 397 290 137 0 chr3 78112352 78112535 -149412043 + MIR SINE MIR 2 209 -53 214 205 0 0 chr3 78113155 78113194 -149411384 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1055 208 43 65 chr3 78113223 78113441 -149411137 + MER33 DNA MER1_type 7 217 -2368 2389 76 0 3 chr3 78113441 78113730 -149410848 - AluY SINE Alu -23 288 1 1055 208 43 65 chr3 78113730 78113833 -149410745 + MER33 DNA MER1_type 217 321 -3 2022 152 7 0 chr3 78113866 78114176 -149410402 - AluSx SINE Alu 0 312 1 293 241 12 0 chr3 78114177 78114260 -149410318 - MIR SINE MIR -59 203 120 291 212 0 61 chr3 78114566 78114632 -149409946 - MER112 DNA MER1_type -6 254 193 506 107 0 13 chr3 78114751 78114826 -149409752 + FLAM_C SINE Alu 37 110 -33 358 209 326 8 chr3 78114930 78115059 -149409519 + MLT1L LTR MaLR 30 199 -416 769 212 140 21 chr3 78115059 78115252 -149409326 + MER20 DNA MER1_type 1 216 -3 530 235 27 104 chr3 78115253 78115474 -149409104 + MLT1J LTR MaLR 127 330 -181 418 264 50 7 chr3 78115472 78115612 -149408966 + MLT1L LTR MaLR 470 615 0 * 531 280 88 10 chr3 78115863 78115979 -149408599 + MIR SINE MIR 34 140 -122 2559 76 14 49 chr3 78115979 78116019 -149408559 + THE1A LTR MaLR 1 41 -314 1911 136 3 44 chr3 78116019 78116336 -149408242 - AluSq SINE Alu -9 304 1 2559 76 14 49 chr3 78116336 78116663 -149407915 + THE1A LTR MaLR 41 355 0 11460 92 26 1 chr3 78116663 78118204 -149406374 + THE1A-int LTR MaLR 1 1580 0 2729 81 3 14 chr3 78118204 78118563 -149406015 + THE1A LTR MaLR 1 355 0 531 280 88 10 chr3 78118563 78118637 -149405941 + MIR SINE MIR 139 241 -21 846 169 0 0 chr3 78118721 78118845 -149405733 - FLAM_C SINE Alu -19 124 1 1394 120 0 0 chr3 78119482 78119673 -149404905 - AluSg/x SINE Alu -9 303 113 250 219 0 0 chr3 78119676 78119717 -149404861 - AluJ/monomer SINE Alu -262 41 1 1873 156 3 41 chr3 78120456 78120770 -149403808 - AluJb SINE Alu 0 312 11 393 260 104 7 chr3 78120843 78120997 -149403581 - MIR SINE MIR -2 260 92 1953 136 26 32 chr3 78121037 78121346 -149403232 - AluSx SINE Alu -5 307 1 191 161 0 0 chr3 78121513 78121544 -149403034 + MIR3 SINE MIR 151 181 -27 1712 214 74 61 chr3 78122153 78122333 -149402245 - L1ME3A LINE L1 -1 6169 5993 2369 82 3 28 chr3 78122333 78122650 -149401928 - AluSg SINE Alu -1 309 1 1712 214 74 61 chr3 78122650 78123010 -149401568 - L1ME3A LINE L1 -177 5993 5622 184 258 0 61 chr3 78123010 78123076 -149401502 - MER5A DNA MER1_type -113 76 15 1437 168 35 51 chr3 78123377 78123693 -149400885 - AluJb SINE Alu 0 312 2 720 234 43 81 chr3 78123701 78123936 -149400642 + MER102a DNA MER1_type 95 320 -10 255 275 60 54 chr3 78123963 78124112 -149400466 - MIR SINE MIR -46 216 67 194 250 73 15 chr3 78125823 78125891 -149398687 + MIR SINE MIR 71 142 -120 205 227 0 0 chr3 78125900 78125944 -149398634 - MIR SINE MIR -63 145 102 330 317 10 0 chr3 78126308 78126409 -149398169 + MER5A DNA MER1_type 9 110 -79 1835 80 47 18 chr3 78128943 78129217 -149395361 + L1MA2 LINE L1 6017 6298 -6 520 180 24 108 chr3 78129240 78129427 -149395151 - L1MB7 LINE L1 -30 6148 5966 2041 119 3 0 chr3 78129595 78129897 -149394681 + AluSq SINE Alu 1 303 -10 365 219 94 109 chr3 78131306 78131498 -149393080 - L1MC4 LINE L1 -1320 6722 6534 621 214 49 55 chr3 78131566 78131743 -149392835 - MER5A DNA MER1_type -10 168 2 323 294 92 68 chr3 78132595 78132758 -149391820 - L2 LINE L2 -92 3180 3014 1083 60 0 0 chr3 78133201 78133335 -149391243 + L1PA10 LINE L1 6031 6164 -4 374 204 214 10 chr3 78133397 78133500 -149391078 + MIR SINE MIR 12 135 -127 * 905 181 13 0 chr3 78133493 78133648 -149390930 - MER5A DNA MER1_type -32 157 1 534 246 91 18 chr3 78134680 78134900 -149389678 - MER112 DNA MER1_type -14 246 11 284 267 158 119 chr3 78134902 78135213 -149389365 + L2 LINE L2 2943 3265 -7 533 42 0 158 chr3 78135806 78135862 -149388716 - MADE1 DNA Mariner 0 80 43 1968 138 3 0 chr3 78135862 78136159 -149388419 + AluSx SINE Alu 1 298 -14 533 42 0 158 chr3 78136159 78136197 -149388381 - MADE1 DNA Mariner -37 43 1 273 224 82 0 chr3 78136231 78136329 -149388249 + L1ME4a LINE L1 5976 6081 -40 270 0 0 0 chr3 78136717 78136747 -149387831 + (TTA)n Simple_repeat Simple_repeat 2 31 0 701 174 0 0 chr3 78136749 78136858 -149387720 - FLAM_C SINE Alu -24 119 11 310 286 165 44 chr3 78137424 78137630 -149386948 - L2 LINE L2 -38 3234 3004 189 239 11 98 chr3 78137742 78137834 -149386744 - L2 LINE L2 -461 2853 2770 342 182 91 47 chr3 78137889 78138043 -149386535 - Charlie8 DNA MER1_type -2132 285 58 5167 111 36 1 chr3 78138154 78139160 -149385418 + L1PA10 LINE L1 5001 6032 -136 391 302 0 41 chr3 78139323 78139470 -149385108 + MIR SINE MIR 31 170 -62 2220 85 0 0 chr3 78139591 78139884 -149384694 - AluY SINE Alu -18 293 1 213 238 0 0 chr3 78140156 78140198 -149384380 + L2 LINE L2 2931 2972 -342 286 234 39 13 chr3 78140227 78140304 -149384274 - Charlie1 DNA MER1_type -2664 97 19 2365 72 3 0 chr3 78140383 78140688 -149383890 - AluSg SINE Alu -4 306 1 1657 187 0 9 chr3 78140801 78141116 -149383462 + AluJo SINE Alu 1 312 0 248 222 34 102 chr3 78141227 78141403 -149383175 - L1MC5 LINE L1 -195 7766 7603 360 77 0 0 chr3 78141520 78141572 -149383006 + (CA)n Simple_repeat Simple_repeat 1 52 0 237 174 0 0 chr3 78141793 78141839 -149382739 - MIR SINE MIR -57 205 160 2923 100 21 21 chr3 78141841 78142271 -149382307 + MER83 LTR ERV1 1 430 -18 381 233 15 0 chr3 78142283 78142374 -149382204 - MIR SINE MIR -63 145 56 261 234 0 0 chr3 78142618 78142682 -149381896 + (TATATG)n Simple_repeat Simple_repeat 3 66 0 2668 200 77 9 chr3 78142684 78143229 -149381349 - MER82 DNA MER2_type -59 594 13 1510 185 9 69 chr3 78144666 78144757 -149379821 - L1MC/D LINE L1 -743 5403 5308 2218 113 0 0 chr3 78144757 78145067 -149379511 - AluSx SINE Alu -2 310 1 1510 185 9 69 chr3 78145067 78145582 -149378996 - L1MC/D LINE L1 -838 5308 4999 182 288 175 25 chr3 78146239 78146319 -149378259 + MIR SINE MIR 24 115 -147 840 264 45 16 chr3 78146818 78147064 -149377514 + MIR SINE MIR 2 254 -8 190 0 67 0 chr3 78149337 78149367 -149375211 + (TTG)n Simple_repeat Simple_repeat 2 33 0 452 298 0 24 chr3 78149439 78149563 -149375015 - L2 LINE L2 -1 3312 3192 180 0 0 0 chr3 78149601 78149621 -149374957 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 2343 155 88 18 chr3 78149622 78149719 -149374859 - L1MC2 LINE L1 -9 6335 6246 210 37 0 0 chr3 78149719 78149746 -149374832 + (CA)n Simple_repeat Simple_repeat 1 27 0 2343 155 88 18 chr3 78149746 78150093 -149374485 - L1MC2 LINE L1 -98 6246 5860 1069 293 37 37 chr3 78151307 78151771 -149372807 + L1ME3A LINE L1 5584 6047 -123 708 160 8 16 chr3 78151883 78152008 -149372570 - FLAM_C SINE Alu -18 125 2 241 61 0 0 chr3 78152939 78152972 -149371606 + MER117 DNA MER1_type 126 158 -39 1262 183 14 5 chr3 78153145 78153364 -149371214 + MER58A DNA MER1_type 4 224 0 480 236 25 68 chr3 78154340 78154463 -149370115 + MIR SINE MIR 26 142 -120 2264 145 19 6 chr3 78154463 78154822 -149369756 - MER47A DNA MER2_type -1 365 2 480 236 25 68 chr3 78154822 78154859 -149369719 + MIR SINE MIR 142 179 -83 206 206 159 0 chr3 78155711 78155774 -149368804 - MIR SINE MIR -146 116 44 212 250 135 58 chr3 78155837 78155931 -149368647 - L2 LINE L2 -503 2811 2707 2222 95 3 3 chr3 78155931 78156237 -149368341 - AluSp SINE Alu -7 306 1 4224 170 50 37 chr3 78156246 78156398 -149368180 - L1MB2 LINE L1 -2 6169 6020 2256 127 14 32 chr3 78156398 78156769 -149367809 + THE1B LTR MaLR 1 364 0 11755 74 27 22 chr3 78156769 78158341 -149366237 + THE1B-int LTR MaLR 1 1580 0 2452 120 14 25 chr3 78158341 78158709 -149365869 + THE1B LTR MaLR 1 364 0 4224 170 50 37 chr3 78158709 78159507 -149365071 - L1MB2 LINE L1 -150 6021 5207 393 185 43 11 chr3 78159518 78159610 -149364968 - L2 LINE L2 -600 2714 2620 2184 99 3 13 chr3 78161133 78161445 -149363133 + AluSc SINE Alu 1 309 0 187 156 0 0 chr3 78161575 78161607 -149362971 - MIR SINE MIR -117 145 114 186 103 0 0 chr3 78161716 78161745 -149362833 + (T)n Simple_repeat Simple_repeat 1 29 0 256 224 26 13 chr3 78163730 78163806 -149360772 - L1ME2 LINE L1 0 6164 6088 2172 88 10 0 chr3 78165104 78165409 -149359169 - AluY SINE Alu -3 308 1 286 328 0 0 chr3 78168504 78168571 -149356007 - MIR SINE MIR -165 97 31 413 276 12 59 chr3 78168586 78168756 -149355822 + MIR SINE MIR 7 168 -94 688 167 30 23 chr3 78168834 78168966 -149355612 - FLAM_C SINE Alu 0 133 1 328 241 72 90 chr3 78170664 78170830 -149353748 - L1MC5 LINE L1 -68 7893 7731 278 135 0 0 chr3 78170838 78170890 -149353688 - L1MB7 LINE L1 0 6184 6133 482 205 223 6 chr3 78172692 78172858 -149351720 + MIR3 SINE MIR 2 203 -5 294 29 0 0 chr3 78172968 78173003 -149351575 + (CA)n Simple_repeat Simple_repeat 2 36 0 1740 164 7 0 chr3 78173004 78173279 -149351299 - AluJb SINE Alu -35 277 1 1817 126 0 48 chr3 78173872 78174181 -149350397 - AluSx SINE Alu -18 294 1 180 77 0 0 chr3 78174498 78174524 -149350054 + (TTTTTA)n Simple_repeat Simple_repeat 3 28 0 201 74 0 0 chr3 78174909 78174936 -149349642 + (TG)n Simple_repeat Simple_repeat 2 28 0 476 263 134 17 chr3 78176161 78176340 -149348238 + MIR SINE MIR 62 261 -1 212 341 222 0 chr3 78176390 78176516 -149348062 - MIR SINE MIR -58 204 51 1799 160 10 13 chr3 78177344 78177650 -149346928 - AluJb SINE Alu -7 305 1 409 384 68 20 chr3 78177936 78178230 -149346348 + L2 LINE L2 2939 3246 -26 974 146 11 96 chr3 78179822 78180063 -149344515 - Charlie5 DNA MER1_type 0 2585 2370 2114 98 0 29 chr3 78180063 78180379 -149344199 + AluSx SINE Alu 1 307 -5 974 146 11 96 chr3 78180379 78180417 -149344161 - Charlie5 DNA MER1_type -215 2370 2330 266 171 157 0 chr3 78180514 78180584 -149343994 - MER3 DNA MER1_type 0 2616 2536 394 234 0 0 chr3 78180584 78180661 -149343917 - MER3 DNA MER1_type -97 112 36 977 165 6 16 chr3 78180749 78180931 -149343647 + AluJo SINE Alu 54 233 -79 1056 187 12 25 chr3 78180932 78181173 -149343405 + L1MB8 LINE L1 5941 6178 0 5753 135 35 25 chr3 78181289 78182426 -149342152 + pTR5 LTR ERV1 741 2030 -408 336 211 40 0 chr3 78182427 78182503 -149342075 + LTR30 LTR ERV1 550 628 -94 1606 85 0 9 chr3 78182512 78182735 -149341843 + pTR5 LTR ERV1 172 392 -2046 456 267 19 68 chr3 78182818 78182979 -149341599 - L2 LINE L2 0 3313 3161 5628 150 20 49 chr3 78182982 78183861 -149340717 + L1MA9 LINE L1 5081 5922 -390 1574 151 39 59 chr3 78183861 78184166 -149340412 + AluJo SINE Alu 1 299 -13 5628 150 20 49 chr3 78184166 78184547 -149340031 + L1MA9 LINE L1 5922 6312 0 240 203 49 140 chr3 78184549 78184692 -149339886 - L2 LINE L2 -161 3152 3023 360 193 24 10 chr3 78184850 78184929 -149339649 + MLT1B LTR MaLR 1 83 -291 22 35 0 0 chr3 78185573 78185602 -149338976 + AT_rich Low_complexity Low_complexity 1 29 0 302 276 40 137 chr3 78185855 78186300 -149338278 - L1M4 LINE L1 -2718 3428 3027 1478 158 23 4 chr3 78186332 78186620 -149337958 - AluJb SINE Alu 0 306 14 672 13 0 0 chr3 78186657 78186734 -149337844 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 1443 187 13 36 chr3 78186761 78187066 -149337512 - AluJo SINE Alu -14 298 1 207 170 43 0 chr3 78187266 78187313 -149337265 + T-rich Low_complexity Low_complexity 3 51 0 294 29 0 0 chr3 78187796 78187831 -149336747 + (TCC)n Simple_repeat Simple_repeat 2 36 0 445 332 20 20 chr3 78188233 78188435 -149336143 - MIR SINE MIR 0 262 61 537 288 149 5 chr3 78189344 78189559 -149335019 + MIR SINE MIR 9 254 -8 440 158 71 185 chr3 78189938 78190122 -149334456 + MER5B DNA MER1_type 1 163 -15 334 308 25 33 chr3 78191700 78191820 -149332758 + MIR SINE MIR 30 148 -60 313 266 64 9 chr3 78193265 78193374 -149331204 + MER103 DNA DNA 2 116 -50 498 323 47 47 chr3 78194047 78194347 -149330231 - L1M4 LINE L1 -3644 2502 2203 860 246 130 28 chr3 78194801 78195163 -149329415 - L2 LINE L2 0 3313 2915 533 179 26 5 chr3 78195710 78195900 -149328678 - Zaphod DNA AcHobo -3088 943 750 * 575 228 65 57 chr3 78195873 78196136 -149328442 + Zaphod DNA AcHobo 2829 3093 -938 1345 181 95 41 chr3 78196140 78196390 -149328188 - L1M4 LINE L1 -609 5575 5340 2253 80 0 3 chr3 78196390 78196689 -149327889 - AluY SINE Alu -13 298 1 1345 181 95 41 chr3 78196689 78196901 -149327677 - L1M4 LINE L1 -844 5340 5091 301 240 67 48 chr3 78197309 78197413 -149327165 + MIR SINE MIR 18 123 -139 1241 80 11 11 chr3 78197597 78197772 -149326806 - AluSq SINE Alu -16 297 123 567 231 159 11 chr3 78197931 78198089 -149326489 + MER5A DNA MER1_type 4 188 -1 715 167 0 8 chr3 78198984 78199104 -149325474 + AluJb SINE Alu 6 124 -188 468 69 0 14 chr3 78199109 78199181 -149325397 - AluY SINE Alu 0 312 242 1157 96 0 18 chr3 78199184 78199351 -149325227 - AluY SINE Alu -147 164 1 22 0 0 0 chr3 78199351 78199373 -149325205 + AT_rich Low_complexity Low_complexity 1 22 0 2013 138 0 0 chr3 78199380 78199684 -149324894 + AluJb SINE Alu 1 304 -8 799 191 70 0 chr3 78199684 78199841 -149324737 + AluJo/FRAM SINE Alu 134 301 -11 1148 130 29 10 chr3 78199978 78200186 -149324392 - L1MB7 LINE L1 -16 6168 5957 2676 203 6 15 chr3 78200294 78200831 -149323747 - MER74A LTR ERVL -26 532 1 381 155 7 16 chr3 78201021 78201097 -149323481 - AluJ/FLAM SINE Alu -245 57 2 472 291 14 47 chr3 78201188 78201336 -149323242 - MIR3 SINE MIR -48 160 18 1869 92 9 79 chr3 78201684 78202012 -149322566 + AluSx SINE Alu 1 305 -7 453 233 11 0 chr3 78202285 78202396 -149322182 - MIR SINE MIR -60 148 56 214 274 0 0 chr3 78203799 78203850 -149320728 + (TG)n Simple_repeat Simple_repeat 2 52 0 333 244 112 122 chr3 78206803 78206974 -149317604 - MIR SINE MIR -56 152 17 263 214 112 0 chr3 78207961 78208050 -149316528 + MER5A DNA MER1_type 47 145 -44 210 244 0 0 chr3 78208463 78208508 -149316070 + L2 LINE L2 3223 3267 -5 232 176 49 98 chr3 78210495 78210597 -149313981 - L1M3e LINE L1 -6125 905 809 259 245 39 59 chr3 78210923 78211025 -149313553 + MER5A DNA MER1_type 88 187 -2 1826 148 17 0 chr3 78211657 78211954 -149312624 - AluJb SINE Alu -10 302 1 740 286 58 0 chr3 78213420 78213609 -149310969 - MER58A DNA MER1_type -23 201 2 465 275 148 22 chr3 78215103 78215332 -149309246 + MIR SINE MIR 5 262 0 325 284 35 43 chr3 78215456 78215572 -149309006 + MIR3 SINE MIR 54 168 -40 2020 125 0 13 chr3 78215622 78215967 -149308611 - AluSg SINE Alu 0 310 3 1667 174 0 16 chr3 78215999 78216303 -149308275 + AluJb SINE Alu 1 299 -13 291 301 44 18 chr3 78216308 78216421 -149308157 - MLT1L LTR MaLR -76 539 424 457 248 148 68 chr3 78216587 78216712 -149307866 - MLT1L LTR MaLR -314 301 187 772 231 62 19 chr3 78216712 78216920 -149307658 - MER20 DNA MER1_type -1 218 2 457 248 148 68 chr3 78216920 78217044 -149307534 - MLT1L LTR MaLR -428 187 32 439 189 11 21 chr3 78217362 78217457 -149307121 - Charlie4 DNA MER1_type -9 1952 1859 1764 166 0 25 chr3 78217596 78217910 -149306668 - AluSx SINE Alu -2 310 5 944 245 14 5 chr3 78218206 78218422 -149306156 + MER58A DNA MER1_type 3 220 -4 1420 255 26 22 chr3 78218450 78218730 -149305848 + Charlie4a DNA MER1_type 38 322 -1639 1783 126 52 11 chr3 78218730 78219016 -149305562 + AluJb SINE Alu 1 298 -14 1420 255 26 22 chr3 78219016 78219198 -149305380 + Charlie4a DNA MER1_type 322 502 -6 43 56 0 0 chr3 78219289 78219360 -149305218 + AT_rich Low_complexity Low_complexity 1 71 0 289 267 17 42 chr3 78219368 78219488 -149305090 - L1ME LINE L1 -431 5690 5574 1261 165 85 4 chr3 78219488 78219744 -149304834 - AluJb SINE Alu 0 301 27 186 189 0 0 chr3 78219760 78219797 -149304781 + (ATG)n Simple_repeat Simple_repeat 2 38 0 455 219 151 0 chr3 78219806 78219925 -149304653 - MIR SINE MIR -22 240 104 2205 103 0 0 chr3 78219932 78220259 -149304319 + AluY SINE Alu 2 311 0 2434 176 49 48 chr3 78220365 78220697 -149303881 + L1MD1 LINE L1 5655 5990 -252 1806 139 0 63 chr3 78220697 78221014 -149303564 + AluSx SINE Alu 1 297 -15 2434 176 49 48 chr3 78221014 78221250 -149303328 + L1MD1 LINE L1 5990 6224 -18 406 254 23 31 chr3 78221875 78222005 -149302573 + MIR SINE MIR 72 200 -62 256 329 133 16 chr3 78222840 78223207 -149301371 + L2 LINE L2 2597 3009 -263 24 0 0 0 chr3 78423688 78423712 -149100866 + AT_rich Low_complexity Low_complexity 1 24 0 188 397 0 16 chr3 78423965 78424086 -149100492 + L2 LINE L2 2672 2790 -524 553 304 60 29 chr3 78424346 78424759 -149099819 + L2 LINE L2 2763 3187 -85 2085 206 81 39 chr3 78425242 78425264 -149099314 - L1ME1 LINE L1 -18 6148 6128 2231 111 7 0 chr3 78425264 78425562 -149099016 - AluSg SINE Alu -10 300 1 2085 206 81 39 chr3 78425562 78426208 -149098370 - L1ME1 LINE L1 -38 6128 5452 847 246 42 17 chr3 78427196 78427432 -149097146 + MIR SINE MIR 20 261 -1 3865 65 13 11 chr3 78430929 78431453 -149093125 + L1PA7 LINE L1 5628 6152 -2 346 163 12 0 chr3 78432138 78432218 -149092360 + Charlie5 DNA MER1_type 47 127 -2485 * 1333 186 49 11 chr3 78432215 78432464 -149092114 + Charlie5 DNA MER1_type 2234 2501 -123 1211 206 76 68 chr3 78432464 78432667 -149091911 + MLT1D LTR MaLR 1 201 -304 1715 192 3 13 chr3 78432667 78432980 -149091598 + AluJo SINE Alu 1 310 -2 1211 206 76 68 chr3 78432980 78433275 -149091303 + MLT1D LTR MaLR 201 503 -2 1333 186 49 11 chr3 78433275 78433375 -149091203 + Charlie5 DNA MER1_type 2501 2596 -28 1861 121 0 0 chr3 78433389 78433666 -149090912 - AluSx SINE Alu 0 312 36 618 354 23 11 chr3 78433913 78434173 -149090405 + L3 LINE CR1 703 965 -612 2059 137 76 8 chr3 78434534 78434914 -149089664 + MSTA LTR MaLR 23 428 0 780 236 30 78 chr3 78434970 78435241 -149089337 + MIR SINE MIR 5 262 0 1389 259 60 77 chr3 78435680 78436651 -149087927 - L2 LINE L2 0 3313 2363 306 0 0 0 chr3 78436885 78436919 -149087659 + (TG)n Simple_repeat Simple_repeat 1 34 0 290 271 7 113 chr3 78437847 78437998 -149086580 + MIR SINE MIR 13 147 -115 809 298 110 6 chr3 78439526 78439889 -149084689 + MLT1I LTR MaLR 9 409 0 798 256 24 57 chr3 78439966 78440212 -149084366 + MIR SINE MIR 19 256 -6 321 0 61 0 chr3 78440213 78440262 -149084316 + (TA)n Simple_repeat Simple_repeat 1 52 0 203 156 0 0 chr3 78441353 78441385 -149083193 + CT-rich Low_complexity Low_complexity 4 35 0 2321 122 0 0 chr3 78441859 78442171 -149082407 - AluSx SINE Alu 0 312 1 207 291 18 0 chr3 78442978 78443033 -149081545 + MIR SINE MIR 186 241 -21 298 306 14 35 chr3 78443105 78443249 -149081329 + MER117 DNA MER1_type 57 197 0 225 65 0 0 chr3 78443278 78443309 -149081269 + (TTG)n Simple_repeat Simple_repeat 2 32 0 218 283 71 35 chr3 78444094 78444207 -149080371 + MIR SINE MIR 132 248 -14 320 327 107 6 chr3 78444236 78444404 -149080174 + MIR SINE MIR 59 243 -19 239 267 33 0 chr3 78444381 78444441 -149080137 - L2 LINE L2 -1 3312 3251 * 300 313 55 43 chr3 78445036 78445199 -149079379 + L2 LINE L2 2917 3081 -191 238 194 0 83 chr3 78445362 78445434 -149079144 - MER3 DNA MER1_type 0 209 144 308 352 16 0 chr3 78445530 78445658 -149078920 + MER117 DNA MER1_type 2 131 -66 1794 142 53 30 chr3 78446365 78446605 -149077973 - MER7A DNA MER2_type -2692 346 96 725 111 0 0 chr3 78446605 78446713 -149077865 + L1PA13 LINE L1 6051 6158 -5 1794 142 53 30 chr3 78446713 78446811 -149077767 - MER7A DNA MER2_type -2942 96 2 2339 106 0 3 chr3 78447487 78447799 -149076779 + AluSq SINE Alu 1 311 -2 261 226 0 0 chr3 78449783 78449836 -149074742 + (CA)n Simple_repeat Simple_repeat 2 54 0 186 300 57 0 chr3 78449900 78449970 -149074608 - L2 LINE L2 -8 3264 3191 273 253 71 10 chr3 78450053 78450152 -149074426 + MER103 DNA DNA 19 123 -43 628 294 59 24 chr3 78450581 78450921 -149073657 - L1ME4a LINE L1 -224 5897 5546 183 80 0 0 chr3 78453146 78453171 -149071407 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 215 258 201 35 chr3 78454151 78454283 -149070295 - MIR SINE MIR -55 153 2 312 318 148 28 chr3 78454448 78454665 -149069913 + MIR SINE MIR 19 261 -1 213 307 13 0 chr3 78455441 78455516 -149069062 + G-rich Low_complexity Low_complexity 2 77 0 216 0 0 0 chr3 78455731 78455755 -149068823 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 27 29 0 0 chr3 78458152 78458186 -149066392 + AT_rich Low_complexity Low_complexity 1 34 0 276 326 112 10 chr3 78459557 78459655 -149064923 - L2 LINE L2 -2 3311 3204 660 295 42 30 chr3 78460128 78460365 -149064213 - MIR SINE MIR -10 252 13 533 275 166 54 chr3 78460988 78461319 -149063259 + MLT1I LTR MaLR 39 406 -3 214 182 0 0 chr3 78461461 78461505 -149063073 + A-rich Low_complexity Low_complexity 4 47 0 840 333 76 25 chr3 78462118 78462646 -149061932 + L2 LINE L2 2384 2938 -376 420 245 82 34 chr3 78462752 78462899 -149061679 + L2 LINE L2 3160 3313 0 2035 141 20 0 chr3 78462985 78463289 -149061289 + AluSq SINE Alu 1 310 -3 384 359 25 19 chr3 78463554 78463713 -149060865 - MIR3 SINE MIR -6 202 43 204 40 0 0 chr3 78463759 78463784 -149060794 + (CA)n Simple_repeat Simple_repeat 2 26 0 239 140 20 0 chr3 78463784 78463834 -149060744 + GA-rich Low_complexity Low_complexity 1 51 0 744 200 161 6 chr3 78463834 78464014 -149060564 + MER3 DNA MER1_type 2 209 0 399 285 75 61 chr3 78464146 78464736 -149059842 - MLT1L LTR MaLR -9 606 17 237 209 29 29 chr3 78464990 78465095 -149059483 + T-rich Low_complexity Low_complexity 2 106 0 341 264 19 57 chr3 78465651 78465757 -149058821 + MIR SINE MIR 19 120 -142 210 284 0 116 chr3 78466227 78466256 -149058322 + L2 LINE L2 2889 2920 -354 2042 154 16 0 chr3 78466256 78466561 -149058017 - AluSx SINE Alu -2 310 1 210 284 0 116 chr3 78466561 78466626 -149057952 + L2 LINE L2 2920 2974 -300 183 321 60 71 chr3 78466685 78466869 -149057709 + L2 LINE L2 2712 2893 -421 357 307 0 0 chr3 78467030 78467118 -149057460 + L2 LINE L2 3226 3313 0 884 230 0 0 chr3 78467631 78467809 -149056769 + MER5B DNA MER1_type 1 178 0 181 167 0 0 chr3 78467952 78467982 -149056596 - MIR SINE MIR -14 248 219 271 183 0 50 chr3 78468540 78468600 -149055978 + MLT1L LTR MaLR 556 612 -3 440 306 12 69 chr3 78468648 78468821 -149055757 - MIR3 SINE MIR -36 172 10 322 287 28 0 chr3 78469715 78469823 -149054755 + L2 LINE L2 2401 2511 -803 294 273 11 0 chr3 78470092 78470180 -149054398 + MLT1K LTR MaLR 144 232 -356 471 264 41 0 chr3 78470374 78470495 -149054083 + MER58A DNA MER1_type 37 162 0 685 283 54 37 chr3 78470823 78471120 -149053458 - MLT1I LTR MaLR -87 322 21 2967 157 19 42 chr3 78471127 78471745 -149052833 - MLT2B3 LTR ERVL -1 519 1 345 326 45 8 chr3 78471762 78471894 -149052684 - MIR SINE MIR -98 164 28 23 33 0 0 chr3 78472898 78472928 -149051650 + AT_rich Low_complexity Low_complexity 1 30 0 433 315 69 25 chr3 78472943 78473219 -149051359 - L2 LINE L2 -18 3295 3008 381 147 53 0 chr3 78473280 78473355 -149051223 - MADE1 DNA Mariner -1 79 1 473 336 0 7 chr3 78473443 78473583 -149050995 + MIR3 SINE MIR 44 182 -26 405 0 0 0 chr3 78473647 78473692 -149050886 + (CA)n Simple_repeat Simple_repeat 2 46 0 555 53 0 0 chr3 78473963 78474038 -149050540 + (TG)n Simple_repeat Simple_repeat 1 75 0 505 289 116 5 chr3 78476593 78476783 -149047795 - MIR SINE MIR -7 255 45 204 277 108 15 chr3 78477106 78477171 -149047407 + L2 LINE L2 3242 3312 -1 2416 63 0 3 chr3 78477366 78477667 -149046911 + AluY SINE Alu 7 306 -5 25 0 0 0 chr3 78477783 78477808 -149046770 + AT_rich Low_complexity Low_complexity 1 25 0 773 262 21 69 chr3 78477880 78478149 -149046429 - L2 LINE L2 -1 3312 3060 1402 226 65 25 chr3 78478149 78478596 -149045982 + MLT1C LTR MaLR 3 467 0 773 262 21 69 chr3 78478596 78478658 -149045920 - L2 LINE L2 -253 3060 2997 184 262 115 16 chr3 78478785 78478846 -149045732 + L2 LINE L2 3247 3313 0 602 272 189 23 chr3 78478902 78479060 -149045518 - L2 LINE L2 -324 2989 2859 854 222 0 26 chr3 78479060 78479254 -149045324 - MER5A DNA MER1_type 0 189 1 602 272 189 23 chr3 78479254 78479433 -149045145 - L2 LINE L2 -454 2859 2612 248 195 0 134 chr3 78480399 78480428 -149044150 + MIR3 SINE MIR 85 116 -92 2094 140 17 0 chr3 78480428 78480786 -149043792 + L1MA4A LINE L1 5940 6303 0 248 195 0 134 chr3 78480786 78480838 -149043740 + MIR3 SINE MIR 116 155 -53 260 221 15 29 chr3 78480990 78481058 -149043520 - Charlie8 DNA MER1_type -10 2407 2341 2219 105 0 3 chr3 78481245 78481540 -149043038 - AluSg SINE Alu -16 294 1 627 50 0 0 chr3 78481783 78481863 -149042715 + MADE1 DNA Mariner 1 80 0 401 331 45 11 chr3 78482540 78482718 -149041860 - LTR16C LTR ERVL -113 378 195 283 351 39 0 chr3 78483039 78483193 -149041385 - MIR SINE MIR -1 261 102 557 263 16 101 chr3 78484900 78485147 -149039431 + L2 LINE L2 3083 3308 -5 195 254 0 0 chr3 78486489 78486552 -149038026 + (TA)n Simple_repeat Simple_repeat 2 64 0 1236 211 111 17 chr3 78487054 78487352 -149037226 + MLT1D LTR MaLR 180 505 0 22 35 0 0 chr3 78487717 78487746 -149036832 + AT_rich Low_complexity Low_complexity 1 29 0 368 386 43 9 chr3 78488228 78488461 -149036117 + MIR SINE MIR 8 248 -14 288 271 0 35 chr3 78488512 78488597 -149035981 + MIR3 SINE MIR 100 181 -27 562 278 72 18 chr3 78488750 78488973 -149035605 - L2 LINE L2 -5 3308 3074 565 105 39 137 chr3 78488975 78489128 -149035450 - L1MA4A LINE L1 0 6303 6166 269 319 55 0 chr3 78489244 78489335 -149035243 - MIR SINE MIR 0 262 167 626 177 34 77 chr3 78489754 78489963 -149034615 - Charlie5 DNA MER1_type -27 2585 2386 2037 138 0 26 chr3 78489978 78490283 -149034295 + AluSx SINE Alu 1 297 -15 6189 128 32 3 chr3 78490291 78491390 -149033188 - L1MA8 LINE L1 -5 6286 5156 844 169 0 1 chr3 78491391 78491534 -149033044 - MER33 DNA MER1_type -250 74 1 2117 113 11 0 chr3 78492086 78492393 -149032185 + AluSx SINE Alu 1 310 0 1581 192 30 27 chr3 78492980 78493349 -149031229 - L1MA8 LINE L1 -1670 4476 4107 328 207 0 73 chr3 78493349 78493431 -149031147 - MER20 DNA MER1_type -139 80 5 285 29 0 0 chr3 78493460 78493494 -149031084 + (TTG)n Simple_repeat Simple_repeat 2 35 0 192 370 116 29 chr3 78493533 78493706 -149030872 - L2 LINE L2 -319 2994 2807 197 257 0 69 chr3 78494356 78494457 -149030121 - MIR SINE MIR -32 230 137 739 297 40 5 chr3 78494702 78494924 -149029654 - MIR SINE MIR -32 230 1 27 29 0 0 chr3 78496119 78496153 -149028425 + AT_rich Low_complexity Low_complexity 1 34 0 696 323 30 13 chr3 78496483 78496718 -149027860 - MIR SINE MIR -11 251 13 26 0 0 0 chr3 78496799 78496825 -149027753 + AT_rich Low_complexity Low_complexity 1 26 0 456 284 47 41 chr3 78497072 78497588 -149026990 - L1ME LINE L1 -308 5837 5165 2276 130 8 8 chr3 78497626 78497981 -149026597 + THE1A LTR MaLR 1 355 0 1556 189 108 28 chr3 78497991 78498419 -149026159 + MLT1C LTR MaLR 6 467 0 745 275 69 103 chr3 78498430 78498848 -149025730 - L1ME LINE L1 -1037 5092 4661 207 0 0 0 chr3 78498848 78498871 -149025707 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 745 275 69 103 chr3 78498871 78499376 -149025202 - L1ME LINE L1 -1468 4661 4231 225 0 0 0 chr3 78499376 78499401 -149025177 + (GA)n Simple_repeat Simple_repeat 2 26 0 745 275 69 103 chr3 78499401 78499885 -149024693 - L1ME LINE L1 -1898 4231 3732 358 302 47 0 chr3 78500419 78500588 -149023990 - L1ME LINE L1 -3600 2529 2353 2662 124 41 19 chr3 78500605 78501071 -149023507 - L1MA3 LINE L1 -15 6290 5815 6499 81 10 1 chr3 78501076 78502553 -149022025 - L1PA8 LINE L1 -4 6168 4675 628 130 0 0 chr3 78502556 78502656 -149021922 - L1MA3 LINE L1 -482 5823 5724 * 4326 188 12 18 chr3 78502643 78502827 -149021751 - L1 LINE L1 -1785 4361 4177 984 54 78 0 chr3 78502827 78502956 -149021622 + MER85 DNA T2_type 1 139 0 4326 188 12 18 chr3 78502956 78503684 -149020894 - L1 LINE L1 -1969 4177 3454 28 0 0 0 chr3 78503686 78503714 -149020864 + AT_rich Low_complexity Low_complexity 1 28 0 309 207 75 35 chr3 78503820 78503994 -149020584 - L1ME LINE L1 -5211 908 728 404 235 59 0 chr3 78504391 78504493 -149020085 - Tigger6 DNA MER2_type -373 1224 1117 257 299 41 34 chr3 78504724 78504871 -149019707 + LTR16C LTR ERVL 344 491 0 220 373 31 67 chr3 78505007 78505232 -149019346 - L2 LINE L2 -391 2923 2707 2115 114 7 0 chr3 78505318 78505615 -149018963 + AluSq SINE Alu 10 308 -5 234 0 0 0 chr3 78505615 78505641 -149018937 + (TA)n Simple_repeat Simple_repeat 2 27 0 4967 183 27 47 chr3 78506016 78506255 -149018323 - Tigger6a DNA MER2_type -514 1083 841 1185 202 52 85 chr3 78506255 78506642 -149017936 + MLT1A2 LTR MaLR 1 374 0 4967 183 27 47 chr3 78506642 78506677 -149017901 - Tigger6a DNA MER2_type -756 841 807 1539 186 0 52 chr3 78506677 78506967 -149017611 + AluJo SINE Alu 1 275 -37 4967 183 27 47 chr3 78506967 78507791 -149016787 - Tigger6a DNA MER2_type -790 807 6 35231 107 13 11 chr3 78507851 78513978 -149010600 - L1PA6 LINE L1 -5 6149 11 312 308 45 45 chr3 78514014 78514147 -149010431 + MIR SINE MIR 44 176 -86 193 194 0 0 chr3 78514160 78514191 -149010387 - MIR SINE MIR -12 250 220 2028 124 0 14 chr3 78514374 78514686 -149009892 + AluSc SINE Alu 1 308 0 429 272 77 6 chr3 78515703 78515872 -149008706 + L1ME3A LINE L1 5521 5701 -469 2381 149 10 33 chr3 78515872 78516268 -149008310 + MSTB LTR MaLR 40 426 0 1162 243 97 27 chr3 78516268 78516679 -149007899 + L1ME3A LINE L1 5722 6161 -9 275 293 128 53 chr3 78517518 78517651 -149006927 + MIR SINE MIR 120 262 0 26 0 0 0 chr3 78517750 78517776 -149006802 + AT_rich Low_complexity Low_complexity 1 26 0 904 305 63 31 chr3 78517837 78518326 -149006252 + MLT1H LTR MaLR 43 547 -2 2202 111 0 7 chr3 78518817 78519115 -149005463 + AluSg SINE Alu 1 296 -14 180 279 0 0 chr3 78520407 78520468 -149004110 + GA-rich Low_complexity Low_complexity 1 61 0 21 36 0 0 chr3 78522187 78522215 -149002363 + AT_rich Low_complexity Low_complexity 1 28 0 560 275 25 76 chr3 78522885 78523121 -149001457 - MIR SINE MIR 0 262 39 601 175 32 8 chr3 78523221 78523347 -149001231 + L1PB4 LINE L1 6025 6153 -3 231 54 0 0 chr3 78523355 78523392 -149001186 - L1MCa LINE L1 -4478 1948 1912 438 245 128 87 chr3 78523746 78523942 -149000636 - MLT1K LTR MaLR -11 577 374 256 202 39 39 chr3 78524351 78524581 -148999997 + L1MEd LINE L1 561 826 -5293 301 285 51 29 chr3 78524799 78524936 -148999642 - MIR SINE MIR -2 260 121 1795 149 23 23 chr3 78525055 78525357 -148999221 - AluJo SINE Alu -10 302 1 2938 210 39 56 chr3 78525548 78526761 -148997817 - L1ME1 LINE L1 -5 6095 4916 1547 224 122 29 chr3 78526823 78527265 -148997313 - MLT1D LTR MaLR 0 505 23 514 242 64 0 chr3 78527278 78527435 -148997143 - L1ME1 LINE L1 -1197 4883 4717 2152 143 89 2 chr3 78527440 78527888 -148996690 + MER1A DNA MER1_type 1 529 0 3735 255 87 6 chr3 78527895 78529450 -148995128 - L1ME1 LINE L1 -1368 4712 2849 2942 164 13 6 chr3 78529478 78530002 -148994576 - L1MB3 LINE L1 -28 6155 5628 1302 213 35 83 chr3 78530001 78530299 -148994279 - L1ME1 LINE L1 -3235 2845 2534 * 2418 99 0 0 chr3 78530299 78530611 -148993967 - AluSx SINE Alu 0 312 1 4168 173 65 57 chr3 78530616 78531678 -148992900 + MER11C LTR ERVK 1 1071 0 1302 213 35 83 chr3 78531678 78531942 -148992636 - L1ME1 LINE L1 -3550 2530 2304 621 246 0 49 chr3 78531995 78532219 -148992359 - L1MA9 LINE L1 -38 6274 6062 634 293 73 51 chr3 78532344 78532977 -148991601 + L1MC4 LINE L1 5299 5948 -1860 378 0 0 0 chr3 78532977 78533019 -148991559 + (TG)n Simple_repeat Simple_repeat 1 42 0 634 293 73 51 chr3 78533019 78533031 -148991547 + L1MC4 LINE L1 5948 5958 -1850 440 224 182 0 chr3 78533582 78533725 -148990853 - MER112 DNA MER1_type -12 248 80 189 0 0 0 chr3 78533730 78533751 -148990827 + (TA)n Simple_repeat Simple_repeat 2 22 0 1460 275 80 72 chr3 78534745 78535143 -148989435 - L1ME1 LINE L1 -3962 2299 1905 1533 199 4 0 chr3 78535143 78535462 -148989116 - AluJo SINE Alu 0 330 11 1460 275 80 72 chr3 78535462 78536091 -148988487 - L1ME1 LINE L1 -4356 1905 1282 216 0 0 0 chr3 78536091 78536115 -148988463 + (TG)n Simple_repeat Simple_repeat 2 25 0 1460 275 80 72 chr3 78536115 78536375 -148988203 - L1ME1 LINE L1 -4979 1282 1025 1674 201 3 0 chr3 78536375 78536669 -148987909 - AluJo SINE Alu -11 301 7 1460 275 80 72 chr3 78536669 78537254 -148987324 - L1ME1 LINE L1 -5236 1025 337 3804 203 60 17 chr3 78537406 78538309 -148986269 - L1MD2 LINE L1 -10 6349 5408 408 198 108 0 chr3 78538310 78538421 -148986157 + L1M LINE L1 5254 5376 -983 1335 197 26 67 chr3 78541014 78541404 -148983174 + MLT1A2 LTR MaLR 1 374 0 1968 129 16 0 chr3 78542121 78542424 -148982154 + L1PB4 LINE L1 5837 6144 -12 254 284 23 0 chr3 78542428 78542516 -148982062 + L1MC4 LINE L1 6614 6703 -1339 227 211 0 0 chr3 78542550 78542602 -148981976 - L1MC4 LINE L1 -1339 6703 6652 343 354 55 0 chr3 78543345 78543472 -148981106 + L2 LINE L2 3139 3272 0 298 291 92 14 chr3 78543676 78543817 -148980761 + L1ME4a LINE L1 5946 6097 -24 1582 174 71 19 chr3 78543963 78544285 -148980293 + MER44D DNA MER2_type 1 609 0 907 197 84 15 chr3 78544705 78544908 -148979670 + MER20 DNA MER1_type 1 217 -2 988 252 170 44 chr3 78545378 78545949 -148978629 - HAL1b LINE L1 -627 721 79 2094 172 37 32 chr3 78546409 78546952 -148977626 + MLT2A2 LTR ERVL 1 554 0 1737 160 126 0 chr3 78547304 78547629 -148976949 + MER47A DNA MER2_type 1 366 0 1411 221 50 0 chr3 78547631 78547911 -148976667 + AluJo SINE Alu 2 295 -7 422 140 40 0 chr3 78547911 78548011 -148976567 + GA-rich Low_complexity Low_complexity 1 104 0 243 146 0 0 chr3 78548375 78548416 -148976162 - MER53 DNA DNA -76 113 73 478 250 86 33 chr3 78548422 78548574 -148976004 - MLT1I LTR MaLR 0 505 346 180 0 114 0 chr3 78549696 78549731 -148974847 + (TTAA)n Simple_repeat Simple_repeat 1 39 0 399 308 131 19 chr3 78549752 78549966 -148974612 - MIR SINE MIR -13 249 12 1267 13 7 0 chr3 78550226 78550375 -148974203 - L1PA4 LINE L1 -295 5860 5711 181 273 127 0 chr3 78550515 78550570 -148974008 - MIR3 SINE MIR -9 199 138 1432 155 49 0 chr3 78550594 78550839 -148973739 - Tigger2 DNA MER2_type 0 2718 2462 4478 141 27 8 chr3 78550921 78551661 -148972917 - Tigger2 DNA MER2_type -1964 754 1 777 274 36 8 chr3 78551769 78552017 -148972561 + MIR SINE MIR 8 262 0 2254 82 0 3 chr3 78552150 78552441 -148972137 + AluY SINE Alu 1 290 -21 33 0 0 0 chr3 78552441 78552474 -148972104 + AT_rich Low_complexity Low_complexity 1 33 0 519 268 6 65 chr3 78552740 78552908 -148971670 - MLT1I LTR MaLR -195 214 57 345 314 43 7 chr3 78552976 78553116 -148971462 - MIR SINE MIR -3 259 115 219 368 136 0 chr3 78553310 78553435 -148971143 - L2 LINE L2 -213 3059 2918 500 289 122 11 chr3 78553562 78553742 -148970836 + MIR SINE MIR 53 252 -10 1020 261 59 43 chr3 78553802 78554382 -148970196 - MER76 LTR ERV -33 655 3 15662 31 0 0 chr3 78556025 78558669 -148965909 + L1PA3 LINE L1 3513 6155 0 360 266 58 80 chr3 78558707 78558895 -148965683 + MIR SINE MIR 75 258 -4 186 229 262 19 chr3 78561171 78561282 -148963296 + MIR SINE MIR 8 144 -64 1763 140 3 39 chr3 78561869 78562177 -148962401 + AluSq SINE Alu 1 297 -16 252 0 0 0 chr3 78564784 78564812 -148959766 + (CA)n Simple_repeat Simple_repeat 1 28 0 1328 215 110 54 chr3 78564834 78565124 -148959454 + L1MC5 LINE L1 7311 7583 -378 182 61 0 30 chr3 78565124 78565157 -148959421 + (TAAA)n Simple_repeat Simple_repeat 3 34 0 1328 215 110 54 chr3 78565157 78565420 -148959158 + L1MC5 LINE L1 7583 7895 -66 364 283 126 26 chr3 78565466 78565657 -148958921 - MER63A DNA MER1_type 0 210 1 288 0 0 0 chr3 78565688 78565720 -148958858 + (CA)n Simple_repeat Simple_repeat 2 33 0 216 0 0 0 chr3 78565719 78565743 -148958835 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 228 408 0 10 chr3 78566264 78566367 -148958211 - MIR SINE MIR -112 150 49 1953 149 3 0 chr3 78566623 78566932 -148957646 - AluSx SINE Alu -2 310 1 267 287 119 20 chr3 78567424 78567525 -148957053 - L2 LINE L2 -22 3250 3140 291 293 10 61 chr3 78567775 78567874 -148956704 - MER5A DNA MER1_type -61 128 35 630 298 44 15 chr3 78568256 78568461 -148956117 + MIR SINE MIR 46 256 -6 186 310 100 10 chr3 78568584 78568684 -148955894 - MIR3 SINE MIR -2 206 98 499 244 8 17 chr3 78568803 78568922 -148955656 - L2 LINE L2 0 3313 3196 1660 216 63 11 chr3 78568939 78569383 -148955195 - MLT1C LTR MaLR 0 467 1 2261 181 9 23 chr3 78570028 78570460 -148954118 - MSTB LTR MaLR 0 426 1 431 196 22 0 chr3 78570526 78570618 -148953960 + L1M4 LINE L1 4899 4992 -1154 288 0 0 0 chr3 78570649 78570681 -148953897 + (TG)n Simple_repeat Simple_repeat 2 33 0 268 180 0 0 chr3 78570689 78570750 -148953828 - L1M4 LINE L1 -913 5233 5173 381 153 0 51 chr3 78570753 78570851 -148953727 - L1M4 LINE L1 -1085 5061 4969 * 6391 217 54 30 chr3 78570849 78572480 -148952098 - L1M4c LINE L1 -4690 1956 258 1972 127 27 20 chr3 78572480 78572780 -148951798 - AluSg SINE Alu -8 302 1 6391 217 54 30 chr3 78572780 78573019 -148951559 - L1M4c LINE L1 -6388 258 26 4735 87 21 39 chr3 78573019 78573719 -148950859 - LTR12 LTR ERV1 0 688 1 216 280 0 27 chr3 78575740 78575815 -148948763 + MIR SINE MIR 183 255 -7 465 197 0 117 chr3 78576923 78577060 -148947518 + L1M4 LINE L1 249 369 -6173 450 311 72 10 chr3 78577065 78577274 -148947304 + MLT1K LTR MaLR 332 553 -35 242 328 43 111 chr3 78577297 78577532 -148947046 - L2 LINE L2 -22 3250 3032 2303 247 32 19 chr3 78578548 78579031 -148945547 + MLT1F LTR MaLR 1 493 -49 1814 195 115 0 chr3 78579031 78579415 -148945163 - MSTA LTR MaLR 0 428 1 2303 247 32 19 chr3 78579415 78579466 -148945112 + MLT1F LTR MaLR 493 542 0 204 286 233 24 chr3 78579831 78580037 -148944541 - L3 LINE CR1 -219 1358 1110 952 148 77 55 chr3 78580471 78580654 -148943924 + AluJo SINE Alu 1 187 -125 201 74 0 0 chr3 78581384 78581411 -148943167 + (TG)n Simple_repeat Simple_repeat 2 28 0 415 354 50 29 chr3 78581580 78581820 -148942758 + MIR SINE MIR 2 246 -16 315 265 7 113 chr3 78583567 78583718 -148940860 + MIR SINE MIR 13 147 -115 209 303 0 0 chr3 78584557 78584623 -148939955 + MIR SINE MIR 149 214 -48 685 324 48 34 chr3 78585071 78585618 -148938960 - MLT1K LTR MaLR 0 588 2 2037 263 36 16 chr3 78636293 78637066 -148887512 - L1MCa LINE L1 -2340 4086 3298 921 220 19 12 chr3 78637136 78637395 -148887183 - L1MCa LINE L1 -3588 2838 2578 425 56 0 0 chr3 78637395 78637449 -148887129 + THE1B LTR MaLR 1 54 -310 491 226 151 0 chr3 78637450 78637596 -148886982 - L1MCa LINE L1 -6247 179 12 * 624 202 22 101 chr3 78637593 78637821 -148886757 + L1MC5 LINE L1 7690 7899 -62 2266 70 0 17 chr3 78638253 78638552 -148886026 + AluY SINE Alu 1 294 -17 4496 33 0 2 chr3 78639406 78639977 -148884601 - L1P LINE L1 -3991 2155 1586 6910 11 0 2 chr3 78639977 78640795 -148883783 + L1PA2 LINE L1 5370 6185 0 558 192 0 0 chr3 78642144 78642243 -148882335 + MER5A DNA MER1_type 1 99 -90 2665 257 176 17 chr3 78642350 78643010 -148881568 + L2 LINE L2 1807 2361 -952 1593 151 115 7 chr3 78643010 78643289 -148881289 + AluSx SINE Alu 1 309 -3 2665 257 176 17 chr3 78643289 78643913 -148880665 + L2 LINE L2 2361 3309 -4 407 232 165 85 chr3 78643924 78644196 -148880382 + L2 LINE L2 3008 3301 -12 277 375 48 6 chr3 78644218 78644386 -148880192 - MIR SINE MIR -38 224 50 188 323 97 0 chr3 78644771 78644833 -148879745 + MIR SINE MIR 107 174 -88 247 315 19 37 chr3 78644935 78645043 -148879535 + MLT2E LTR ERVL 39 144 -484 287 286 77 0 chr3 78645518 78645609 -148878969 - MIR SINE MIR -108 154 57 549 166 35 166 chr3 78645757 78645986 -148878592 - MER20 DNA MER1_type -5 214 16 182 301 72 12 chr3 78646390 78646473 -148878105 - L2 LINE L2 -11 3302 3215 202 289 37 74 chr3 78646916 78647051 -148877527 + MER5A DNA MER1_type 29 158 -31 2986 245 14 30 chr3 78647623 78648692 -148875886 + L1M4 LINE L1 2614 3665 -2481 1337 123 123 64 chr3 78648690 78649047 -148875531 + L1MD1 LINE L1 5865 6242 0 * 369 0 0 0 chr3 78649512 78649553 -148875025 + (CA)n Simple_repeat Simple_repeat 2 42 0 783 256 84 5 chr3 78649725 78649940 -148874638 - MIR SINE MIR -19 243 12 579 229 53 6 chr3 78649943 78650113 -148874465 + MER5B DNA MER1_type 1 178 0 264 233 14 0 chr3 78651970 78652043 -148872535 - MLT1F1 LTR MaLR 0 567 494 1128 137 9 35 chr3 78652046 78652273 -148872305 + MER4A LTR ERV1 2 222 -442 542 95 102 95 chr3 78652302 78652439 -148872139 + MER4A LTR ERV1 209 346 -318 251 32 0 226 chr3 78652445 78652507 -148872071 + MER4A LTR ERV1 307 354 -310 511 143 204 14 chr3 78652570 78652717 -148871861 + MER4C LTR ERV1 291 465 0 * 617 227 219 14 chr3 78652717 78652985 -148871593 - MLT1F1 LTR MaLR -75 492 168 2221 92 0 19 chr3 78652998 78653313 -148871265 - AluSc SINE Alu 0 309 1 21 0 0 0 chr3 78654097 78654118 -148870460 + AT_rich Low_complexity Low_complexity 1 21 0 445 224 131 0 chr3 78654118 78654225 -148870353 - FLAM_C SINE Alu -10 123 3 738 220 207 52 chr3 78654372 78654754 -148869824 + MLT1D LTR MaLR 1 441 -64 270 322 0 64 chr3 78654834 78655070 -148869508 - L1MC5 LINE L1 -741 7220 7000 317 350 20 0 chr3 78655101 78655201 -148869377 + L2 LINE L2 3121 3222 -50 217 214 0 0 chr3 78655499 78655541 -148869037 - MIR3 SINE MIR -14 194 153 339 304 0 0 chr3 78655824 78655926 -148868652 - L2 LINE L2 0 3313 3212 859 177 58 13 chr3 78655926 78656234 -148868344 + MSTD LTR MaLR 1 396 0 196 340 43 57 chr3 78656696 78656837 -148867741 + MER5A DNA MER1_type 1 139 -50 * 240 402 9 9 chr3 78656731 78656838 -148867740 - MER5A DNA MER1_type -22 167 61 206 227 0 0 chr3 78657291 78657335 -148867243 - MER5B DNA MER1_type -134 44 1 992 275 68 45 chr3 78657547 78657719 -148866859 + L2 LINE L2 2853 3020 -293 1837 204 3 0 chr3 78657719 78658018 -148866560 + AluJo SINE Alu 1 300 -12 1661 192 21 0 chr3 78658020 78658307 -148866271 + AluJo SINE Alu 1 293 -19 992 275 68 45 chr3 78658307 78658574 -148866004 + L2 LINE L2 3020 3305 -8 301 315 91 28 chr3 78658604 78658747 -148865831 + MER5A DNA MER1_type 37 188 -1 183 304 72 113 chr3 78658774 78658968 -148865610 - L3 LINE CR1 -289 1288 1103 188 354 0 15 chr3 78659327 78659392 -148865186 + L3 LINE CR1 554 617 -960 1604 213 83 35 chr3 78659643 78660123 -148864455 + MLT1D LTR MaLR 3 505 0 268 268 52 0 chr3 78660240 78660337 -148864241 + L1ME3A LINE L1 6060 6161 -9 464 258 8 17 chr3 78660453 78660573 -148864005 + MER58B DNA MER1_type 187 305 -36 332 294 8 40 chr3 78660730 78660856 -148863722 - L2 LINE L2 0 3313 3192 773 236 34 0 chr3 78660882 78661060 -148863518 + MER5A DNA MER1_type 6 189 0 1975 145 6 26 chr3 78661174 78661518 -148863060 - MSTC LTR MaLR 0 428 92 749 260 61 51 chr3 78661864 78662176 -148862402 - MER102a DNA MER1_type -12 318 4 189 297 16 0 chr3 78662329 78662393 -148862185 - MIR3 SINE MIR -41 167 103 347 265 74 47 chr3 78662642 78662836 -148861742 - MIR SINE MIR -36 226 20 560 248 12 25 chr3 78663094 78663255 -148861323 - LTR33 LTR ERVL -7 514 356 565 122 9 9 chr3 78663356 78663463 -148861115 + (GGAA)n Simple_repeat Simple_repeat 3 109 0 554 235 94 13 chr3 78664651 78664885 -148859693 - L1MDa LINE L1 -3493 3715 3463 362 272 150 12 chr3 78664952 78665125 -148859453 - L1MDa LINE L1 -3663 3545 3349 261 264 23 0 chr3 78665126 78665213 -148859365 - L1MDa LINE L1 -4232 2976 2888 1292 167 24 16 chr3 78665214 78665465 -148859113 + Tigger3(Golem) DNA MER2_type 2 254 -2775 2259 158 38 7 chr3 78665466 78665659 -148858919 + Tigger3(Golem) DNA MER2_type 2597 2783 -245 1465 101 19 10 chr3 78665659 78665868 -148858710 - AluSp SINE Alu -12 301 91 2259 158 38 7 chr3 78665868 78666093 -148858485 + Tigger3(Golem) DNA MER2_type 2783 3028 0 4796 226 104 26 chr3 78666093 78667939 -148856639 - L1MDa LINE L1 -4319 2889 809 813 213 15 5 chr3 78667947 78668144 -148856434 - L1M4 LINE L1 -5297 1912 1714 622 246 55 5 chr3 78668244 78668443 -148856135 - MER3 DNA MER1_type 0 209 1 419 312 98 8 chr3 78668448 78668880 -148855698 - L1M4 LINE L1 -513 5651 5164 315 239 185 8 chr3 78668982 78669112 -148855466 - MLT1J2 LTR MaLR -231 219 67 257 336 76 0 chr3 78669415 78669692 -148854886 - L1M4 LINE L1 -1221 4925 4628 209 222 0 22 chr3 78669830 78669875 -148854703 + (CATA)n Simple_repeat Simple_repeat 1 44 0 328 215 25 0 chr3 78670989 78671082 -148853496 - L1MC4 LINE L1 0 8041 7909 225 250 23 11 chr3 78671083 78671171 -148853407 + (TTTA)n Simple_repeat Simple_repeat 2 90 0 197 156 0 22 chr3 78671171 78671216 -148853362 + (TA)n Simple_repeat Simple_repeat 1 44 0 1184 249 65 13 chr3 78671253 78671650 -148852928 - L1MC4 LINE L1 -130 7912 7495 708 309 36 5 chr3 78671654 78671877 -148852701 + L2 LINE L2 1772 2001 -1313 2092 140 13 53 chr3 78671995 78672374 -148852204 + THE1B LTR MaLR 1 364 0 11691 95 9 0 chr3 78672374 78673940 -148850638 + THE1B-int LTR MaLR 1 1580 0 2203 135 19 19 chr3 78673940 78674304 -148850274 + THE1B LTR MaLR 1 364 0 287 274 14 0 chr3 78674596 78674669 -148849909 + MER58B DNA MER1_type 187 260 -81 2130 115 36 0 chr3 78674669 78675000 -148849578 - Tigger3(Golem) DNA MER2_type -1 3028 2686 454 140 97 21 chr3 78675022 78675115 -148849463 - Tigger3(Golem) DNA MER2_type -2928 101 2 379 232 12 0 chr3 78675116 78675198 -148849380 + MER58B DNA MER1_type 259 341 0 3122 77 35 5 chr3 78675529 78675960 -148848618 + MLT2A1 LTR ERVL 1 444 0 14818 67 4 4 chr3 78676106 78678460 -148846118 + HERVL LTR ERVL 2191 4542 -1112 267 235 68 53 chr3 78678598 78678730 -148845848 - L1MDa LINE L1 -3697 2843 2710 3245 191 81 15 chr3 78678736 78679297 -148845281 - L1MB7 LINE L1 -20 6164 5641 2120 92 3 40 chr3 78679297 78679601 -148844977 - AluSg SINE Alu -15 295 3 3245 191 81 15 chr3 78679601 78680198 -148844380 - L1MB7 LINE L1 -543 5641 4937 1182 152 62 92 chr3 78680200 78680526 -148844052 - L1MDa LINE L1 -3824 2716 2394 2143 129 0 7 chr3 78680526 78680821 -148843757 - AluSx SINE Alu -19 293 1 1182 152 62 92 chr3 78680821 78680961 -148843617 - L1MDa LINE L1 -4146 2394 2251 192 40 0 0 chr3 78680982 78681007 -148843571 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 594 153 10 10 chr3 78681007 78681105 -148843473 - AluJ/FLAM SINE Alu -214 98 1 2398 181 55 2 chr3 78681107 78681654 -148842924 - L1MDa LINE L1 -4290 2250 1675 885 220 42 83 chr3 78681687 78681978 -148842600 + MLT1B LTR MaLR 20 297 -93 1572 142 3 77 chr3 78681978 78682350 -148842228 - MER4A LTR ERV1 0 664 262 628 94 0 10 chr3 78682351 78682447 -148842131 - MER4A LTR ERV1 -566 98 4 446 223 11 0 chr3 78682447 78682540 -148842038 + MLT1B LTR MaLR 297 390 0 2535 186 35 25 chr3 78682540 78683234 -148841344 - L1MDa LINE L1 -4858 1682 982 1737 217 40 53 chr3 78683299 78683848 -148840730 - L1MDa LINE L1 -5986 554 13 419 356 75 0 chr3 78685237 78685529 -148839049 - MLT1K LTR MaLR -17 571 258 2690 85 0 0 chr3 78686165 78686530 -148838048 - L1P LINE L1 -5781 365 1 253 240 135 42 chr3 78686634 78686730 -148837848 - MER5A DNA MER1_type -82 107 3 2007 142 10 10 chr3 78686960 78687271 -148837307 + AluSx SINE Alu 1 311 -1 691 226 26 0 chr3 78689121 78689276 -148835302 - MER45A DNA AcHobo -18 160 2 244 236 142 8 chr3 78689394 78689521 -148835057 - LTR16A1 LTR ERVL 0 457 314 471 149 0 0 chr3 78689592 78689666 -148834912 - FLAM_A SINE Alu -36 106 33 183 323 258 0 chr3 78689996 78690089 -148834489 + L2 LINE L2 3196 3312 -1 201 349 66 6 chr3 78691109 78691275 -148833303 + L3b LINE CR1 1226 1401 -182 251 237 0 108 chr3 78691856 78691949 -148832629 - MIR3 SINE MIR -6 202 120 222 260 0 0 chr3 78693707 78693757 -148830821 + (TG)n Simple_repeat Simple_repeat 1 50 0 197 342 13 0 chr3 78693770 78693846 -148830732 + L2 LINE L2 3235 3311 -2 247 247 101 32 chr3 78693876 78694034 -148830544 - L1ME4a LINE L1 -12 6109 5941 1773 155 60 41 chr3 78694090 78694458 -148830120 - THE1C LTR MaLR 0 375 1 405 274 114 50 chr3 78694651 78694870 -148829708 - MIR SINE MIR -14 248 16 1136 172 19 0 chr3 78695024 78695233 -148829345 + MER20 DNA MER1_type 1 213 -6 189 375 132 14 chr3 78695235 78695379 -148829199 + L2 LINE L2 2575 2735 -579 234 333 42 0 chr3 78695393 78695465 -148829113 + MIR SINE MIR 30 104 -158 183 353 47 33 chr3 78695735 78695885 -148828693 + L2 LINE L2 2932 3083 -189 267 175 0 0 chr3 78695921 78695978 -148828600 + (TCCA)n Simple_repeat Simple_repeat 4 60 0 549 325 68 13 chr3 78695989 78696223 -148828355 + MIR SINE MIR 10 256 -6 2147 134 36 12 chr3 78697485 78697814 -148826764 - MER1B DNA MER1_type 0 337 1 323 308 0 0 chr3 78697836 78697925 -148826653 + MLT1K LTR MaLR 71 159 -408 578 243 30 35 chr3 78697925 78698094 -148826484 - MER58B DNA MER1_type 0 341 174 671 303 73 31 chr3 78698351 78698707 -148825871 + MLT1K LTR MaLR 143 513 -75 676 259 102 11 chr3 78698709 78698975 -148825603 - L1ME3A LINE L1 -1 6169 5880 3517 124 31 20 chr3 78698985 78699598 -148824980 - L1MA5 LINE L1 0 7002 6383 10872 200 43 10 chr3 78699603 78702439 -148822139 - L1MA5 LINE L1 -743 6105 3115 1367 24 12 0 chr3 78702439 78702606 -148821972 - L1PA4 LINE L1 0 6155 5987 10872 200 43 10 chr3 78702606 78703025 -148821553 - L1MA5 LINE L1 -3733 3115 2711 470 193 38 74 chr3 78703024 78703186 -148821392 - L1MCa LINE L1 -5907 296 30 * 1696 189 0 4 chr3 78703356 78703631 -148820947 - AluJo SINE Alu -26 286 13 320 313 62 57 chr3 78704225 78704436 -148820142 - L3 LINE CR1 -271 1306 1095 29076 114 13 61 chr3 78704483 78710929 -148813649 + L1PA7 LINE L1 12 6146 -8 343 237 112 28 chr3 78710996 78711277 -148813301 + LTR1 LTR ERV1 1 415 -286 * 1360 198 40 52 chr3 78711274 78711896 -148812682 + LTR28 LTR ERV1 354 1019 -1 1152 177 0 18 chr3 78711899 78712125 -148812453 + L1MD1 LINE L1 6019 6240 -2 1400 269 165 33 chr3 78712419 78712747 -148811831 + L2 LINE L2 2439 2722 -591 2291 72 0 44 chr3 78712747 78713067 -148811511 + AluY SINE Alu 5 310 -1 1400 269 165 33 chr3 78713067 78713481 -148811097 + L2 LINE L2 2722 3287 -26 319 299 28 49 chr3 78714545 78714689 -148809889 - MIR3 SINE MIR -4 204 64 1687 146 16 16 chr3 78714871 78715201 -148809377 - L1MB1 LINE L1 0 6168 5861 4213 99 23 86 chr3 78715201 78715263 -148809315 + LTR8 LTR ERV1 4 68 -623 2305 75 3 0 chr3 78715263 78715555 -148809023 + AluY SINE Alu 1 293 -18 4213 99 23 86 chr3 78715555 78715658 -148808920 + LTR8 LTR ERV1 68 176 -515 2317 100 0 6 chr3 78715658 78715969 -148808609 + AluSx SINE Alu 2 310 -2 4213 99 23 86 chr3 78715969 78716536 -148808042 + LTR8 LTR ERV1 176 691 0 2016 190 9 16 chr3 78716536 78716968 -148807610 - L1MB1 LINE L1 -525 5787 5359 1967 172 60 14 chr3 78716966 78717465 -148807113 + L1 LINE L1 4131 4652 -1494 * 639 312 135 20 chr3 78717491 78718045 -148806533 - MER115 DNA AcHobo 0 693 10 189 333 0 0 chr3 78718763 78718826 -148805752 + L2 LINE L2 2989 3051 -221 193 328 16 0 chr3 78719115 78719176 -148805402 + L2 LINE L2 1134 1195 -2119 334 322 76 13 chr3 78719192 78719395 -148805183 - MIR SINE MIR -10 252 32 276 284 0 45 chr3 78719381 78719469 -148805109 + MIR SINE MIR 111 194 -68 * 253 311 93 25 chr3 78719644 78719805 -148804773 - MIR SINE MIR 0 262 91 3119 204 46 24 chr3 78720290 78721122 -148803456 - L1MC3 LINE L1 -209 7994 7145 2215 129 0 0 chr3 78721133 78721428 -148803150 + AluSq SINE Alu 1 295 -18 4743 127 35 0 chr3 78721428 78722167 -148802411 + L1PA7 LINE L1 16 780 -5681 * 25477 92 3 18 chr3 78722155 78726923 -148797655 + L1PA7 LINE L1 1771 6469 0 1854 123 0 0 chr3 78726937 78727190 -148797388 + AluSg SINE Alu 1 253 -57 5708 236 74 20 chr3 78727190 78730645 -148793933 - L1MC3 LINE L1 -744 5820 3495 238 180 33 0 chr3 78730762 78730823 -148793755 - L1MC3 LINE L1 -3704 2860 2798 674 170 9 0 chr3 78730843 78730955 -148793623 - AluJb SINE Alu -24 288 176 1080 192 0 6 chr3 78730996 78731173 -148793405 - AluJb SINE Alu -134 178 3 229 226 0 0 chr3 78731173 78731226 -148793352 + Tigger7 DNA MER2_type 93 145 -560 * 1150 129 41 21 chr3 78731215 78731409 -148793169 + Tigger7 DNA MER2_type 2290 2487 0 3706 232 50 17 chr3 78731409 78732612 -148791966 - L1MC3 LINE L1 -4851 1194 174 1851 269 48 10 chr3 78732631 78733219 -148791359 - L1ME3A LINE L1 -297 5873 5264 233 139 0 0 chr3 78733455 78733491 -148791087 + MADE1 DNA Mariner 4 39 -41 526 168 0 0 chr3 78733491 78733586 -148790992 - L1PB1 LINE L1 -3 6148 6054 1185 238 19 3 chr3 78733688 78733995 -148790583 - L1P LINE L1 -768 5378 5067 404 165 0 13 chr3 78733997 78734076 -148790502 + L1P LINE L1 4972 5049 -1097 359 58 0 19 chr3 78734077 78734129 -148790449 + MADE1 DNA Mariner 30 80 0 1934 123 0 7 chr3 78734850 78735119 -148789459 + AluSx SINE Alu 34 300 -12 226 254 48 0 chr3 78736546 78736609 -148787969 - MIR SINE MIR -68 194 129 2854 176 141 112 chr3 78736698 78737024 -148787554 + L1MC3 LINE L1 6707 7022 -763 674 237 0 0 chr3 78737024 78737142 -148787436 + FLAM_A SINE Alu 1 118 -15 2854 176 141 112 chr3 78737142 78737224 -148787354 + L1MC3 LINE L1 7022 7100 -685 225 235 153 12 chr3 78737224 78737309 -148787269 + MLT1H LTR MaLR 37 133 -434 2854 176 141 112 chr3 78737309 78737858 -148786720 + L1MC3 LINE L1 7100 7779 -6 32 26 0 0 chr3 78738615 78738654 -148785924 + AT_rich Low_complexity Low_complexity 1 39 0 2374 87 0 3 chr3 78738713 78739024 -148785554 + AluY SINE Alu 1 310 -1 201 74 0 0 chr3 78739627 78739654 -148784924 + (T)n Simple_repeat Simple_repeat 1 27 0 225 0 0 0 chr3 78739739 78739764 -148784814 + (A)n Simple_repeat Simple_repeat 1 25 0 771 233 17 0 chr3 78740230 78740406 -148784172 + MER110 LTR ERV1 296 474 -17 22 35 0 0 chr3 78740519 78740548 -148784030 + AT_rich Low_complexity Low_complexity 1 29 0 1017 175 0 0 chr3 78741512 78741678 -148782900 + FRAM SINE Alu 4 169 -7 959 114 32 0 chr3 78742737 78742895 -148781683 - L1MA8 LINE L1 -6 6285 6123 3294 115 27 4 chr3 78742898 78743413 -148781165 - L1MA8 LINE L1 -217 6074 5548 2126 137 0 0 chr3 78743426 78743719 -148780859 + AluSx SINE Alu 1 293 -19 189 171 0 0 chr3 78743897 78743932 -148780646 + (TA)n Simple_repeat Simple_repeat 2 36 0 371 276 88 37 chr3 78743940 78744157 -148780421 + L1MC4a LINE L1 5703 5930 -1878 25 0 0 0 chr3 78744295 78744320 -148780258 + AT_rich Low_complexity Low_complexity 1 25 0 259 309 21 0 chr3 78744436 78744533 -148780045 - L1MC/D LINE L1 -1965 5843 5745 270 179 0 0 chr3 78744651 78744707 -148779871 + L1ME4a LINE L1 5384 5439 -682 520 144 0 11 chr3 78744918 78745008 -148779570 - AluSg/x SINE Alu -8 302 214 312 258 145 16 chr3 78745030 78745216 -148779362 + L1ME4a LINE L1 5730 5939 -182 724 204 0 0 chr3 78745295 78745442 -148779136 + FRAM SINE Alu 20 166 -10 612 236 104 57 chr3 78747637 78747776 -148776802 + MLT1H LTR MaLR 89 220 -329 2064 90 4 0 chr3 78747776 78748044 -148776534 - AluSp SINE Alu -44 269 1 612 236 104 57 chr3 78748044 78748184 -148776394 + MLT1H LTR MaLR 220 381 -168 250 233 22 33 chr3 78748172 78748262 -148776316 + MLT1H LTR MaLR 494 582 -8 * 583 281 113 69 chr3 78748277 78748739 -148775839 - L2 LINE L2 -2 3311 2830 241 162 14 122 chr3 78749748 78749822 -148774756 - MLT1B LTR MaLR 0 390 325 727 139 0 0 chr3 78749834 78749942 -148774636 + AluJb SINE Alu 24 131 -181 1103 198 103 29 chr3 78749942 78750310 -148774268 - MLT1C LTR MaLR -51 416 6 757 242 0 6 chr3 78750359 78750537 -148774041 - MER5B DNA MER1_type 0 178 2 193 340 0 0 chr3 78750602 78750652 -148773926 - L2 LINE L2 -44 3269 3220 410 226 0 0 chr3 78750667 78750751 -148773827 + MLT1C LTR MaLR 183 266 -201 216 279 66 16 chr3 78750839 78750900 -148773678 - L2 LINE L2 -4 3309 3246 201 121 0 0 chr3 78750921 78750954 -148773624 + (TGAA)n Simple_repeat Simple_repeat 3 35 0 274 247 95 95 chr3 78751655 78751813 -148772765 - MER91A DNA MER1_type -36 160 3 472 324 126 20 chr3 78751816 78752063 -148772515 - L2 LINE L2 -8 3264 2992 1316 156 83 47 chr3 78752524 78752825 -148771753 + AluJo SINE Alu 1 312 0 207 378 49 0 chr3 78753732 78753814 -148770764 + L2 LINE L2 3187 3272 0 410 313 193 5 chr3 78753830 78754022 -148770556 - MIR SINE MIR -30 232 5 229 337 35 23 chr3 78754682 78754768 -148769810 + MIR SINE MIR 8 94 -168 482 290 115 10 chr3 78754866 78755066 -148769512 - MIR SINE MIR 0 262 42 350 218 21 31 chr3 78755106 78755307 -148769271 + GA-rich Low_complexity Low_complexity 1 198 0 400 210 60 78 chr3 78756307 78756474 -148768104 - L1MC5 LINE L1 -92 7869 7706 2332 98 0 0 chr3 78756482 78756778 -148767800 + AluSp SINE Alu 3 298 -15 21 0 0 0 chr3 78757004 78757025 -148767553 + AT_rich Low_complexity Low_complexity 1 21 0 311 301 18 26 chr3 78757596 78757709 -148766869 + L2 LINE L2 3202 3313 0 1710 279 110 20 chr3 78757835 78758524 -148766054 + L1PB4 LINE L1 22 772 -6437 13488 207 27 56 chr3 78759438 78760891 -148763687 + L1PB4 LINE L1 1520 3014 -4204 2104 131 3 22 chr3 78760891 78761205 -148763373 + AluSx SINE Alu 3 310 -2 13488 207 27 56 chr3 78761205 78761474 -148763104 + L1PB4 LINE L1 3014 3289 -3929 2185 115 14 0 chr3 78761474 78761643 -148762935 - AluSq SINE Alu -13 300 124 315 0 0 0 chr3 78761643 78761678 -148762900 + (TG)n Simple_repeat Simple_repeat 2 36 0 2185 115 14 0 chr3 78761678 78761804 -148762774 - AluSq SINE Alu -189 124 1 13488 207 27 56 chr3 78761804 78763554 -148761024 + L1PB4 LINE L1 3289 5088 -2130 186 43 0 0 chr3 78763554 78763577 -148761001 + (CA)n Simple_repeat Simple_repeat 2 24 0 13488 207 27 56 chr3 78763577 78765855 -148758723 + L1PB4 LINE L1 5088 7431 213 1847 157 3 0 chr3 78765855 78766142 -148758436 + AluSx SINE Alu 1 288 -24 279 0 0 0 chr3 78766144 78766175 -148758403 + (TA)n Simple_repeat Simple_repeat 1 31 0 212 0 36 0 chr3 78766174 78766202 -148758376 + (CA)n Simple_repeat Simple_repeat 2 30 0 * 13488 207 27 56 chr3 78766175 78766385 -148758193 + L1PB4 LINE L1 7431 7217 -1 369 284 30 52 chr3 78766788 78767020 -148757558 + L1MC4a LINE L1 6058 6284 -1524 326 221 0 30 chr3 78767043 78767174 -148757404 + GA-rich Low_complexity Low_complexity 2 128 0 3708 244 77 45 chr3 78767224 78768675 -148755903 + L1MC4 LINE L1 6350 7845 -197 7597 114 22 25 chr3 78768690 78770115 -148754463 + L1PA8A LINE L1 4151 5565 -566 787 157 0 20 chr3 78770115 78770258 -148754320 + L1PA8 LINE L1 6020 6163 -9 2324 84 30 0 chr3 78770274 78770573 -148754005 + AluSq SINE Alu 5 312 -1 320 208 109 0 chr3 78770714 78770815 -148753763 + L1MC4 LINE L1 7919 8030 -12 24 32 0 0 chr3 78770948 78770979 -148753599 + AT_rich Low_complexity Low_complexity 1 31 0 306 152 25 38 chr3 78771011 78771090 -148753488 + L1MC5 LINE L1 7840 7917 -44 1949 164 0 7 chr3 78771267 78771566 -148753012 + AluJb SINE Alu 3 299 -13 446 0 19 0 chr3 78771593 78771647 -148752931 + (TC)n Simple_repeat Simple_repeat 2 56 0 180 250 0 67 chr3 78772534 78772594 -148751984 - MIR SINE MIR -134 74 19 687 263 121 38 chr3 78773478 78773900 -148750678 - LTR16A1 LTR ERVL 0 457 1 484 227 42 0 chr3 78774299 78774418 -148750160 - MIR SINE MIR -60 202 79 329 320 34 41 chr3 78775091 78775204 -148749374 + MIR SINE MIR 47 160 -102 1765 159 29 37 chr3 78775204 78775582 -148748996 - THE1C LTR MaLR 0 375 1 329 320 34 41 chr3 78775582 78775615 -148748963 + MIR SINE MIR 160 192 -70 340 255 39 10 chr3 78776720 78776822 -148747756 - MER117 DNA MER1_type -67 130 26 231 361 0 0 chr3 78777341 78777402 -148747176 + L2 LINE L2 2992 3052 -220 4062 99 7 4 chr3 78778070 78778626 -148745952 + THE1-int LTR MaLR 67 624 -956 490 78 0 0 chr3 78778583 78778647 -148745931 - THE1B-int LTR MaLR -1516 64 1 * 2283 116 51 31 chr3 78778649 78779004 -148745574 - THE1B LTR MaLR -2 362 1 180 135 0 0 chr3 78779035 78779072 -148745506 + (TG)n Simple_repeat Simple_repeat 2 38 0 278 306 132 50 chr3 78779104 78779327 -148745251 + MIR SINE MIR 16 254 -8 24 53 0 0 chr3 78779328 78779366 -148745212 + AT_rich Low_complexity Low_complexity 1 38 0 346 278 75 15 chr3 78779563 78779696 -148744882 + MIR SINE MIR 118 258 -4 1588 149 43 68 chr3 78780318 78780688 -148743890 + L1MD1 LINE L1 5543 5903 -339 2597 99 8 51 chr3 78780938 78781330 -148743248 - THE1C LTR MaLR 0 375 1 674 177 0 24 chr3 78782344 78782468 -148742110 + L1PB4 LINE L1 6035 6155 -1 25 51 0 0 chr3 78782469 78782508 -148742070 + AT_rich Low_complexity Low_complexity 1 39 0 295 303 136 13 chr3 78782594 78782749 -148741829 - MIR SINE MIR -15 247 74 207 0 0 0 chr3 78784064 78784087 -148740491 + (A)n Simple_repeat Simple_repeat 1 23 0 1102 211 80 28 chr3 78784284 78784573 -148740005 - MER33 DNA MER1_type 0 324 21 1708 179 7 16 chr3 78784729 78785036 -148739542 + AluJb SINE Alu 1 304 -8 194 288 41 27 chr3 78785118 78785191 -148739387 - L2 LINE L2 -13 3259 3186 292 284 176 0 chr3 78785325 78785427 -148739151 + L2 LINE L2 3153 3272 0 360 23 0 0 chr3 78786471 78786514 -148738064 - MADE1 DNA Mariner -37 43 1 356 233 140 20 chr3 78786516 78786666 -148737912 + MIR SINE MIR 95 262 0 890 197 135 5 chr3 78786864 78787057 -148737521 - MER20 DNA MER1_type -1 218 1 233 353 78 0 chr3 78787219 78787372 -148737206 + L2 LINE L2 2579 2743 -571 268 356 77 0 chr3 78787417 78787521 -148737057 - MER81 DNA DNA 0 114 3 216 0 0 0 chr3 78787680 78787704 -148736874 + (T)n Simple_repeat Simple_repeat 1 24 0 233 315 0 0 chr3 78788183 78788256 -148736322 + Charlie8 DNA MER1_type 2 74 -2343 241 288 0 14 chr3 78788339 78788417 -148736161 + Charlie8 DNA MER1_type 1349 1417 -1000 264 315 96 0 chr3 78788935 78789081 -148735497 + L2 LINE L2 2070 2229 -1085 306 0 0 0 chr3 78789088 78789122 -148735456 + (CA)n Simple_repeat Simple_repeat 1 34 0 276 100 0 0 chr3 78789122 78789162 -148735416 + (TATG)n Simple_repeat Simple_repeat 1 40 0 1159 202 26 0 chr3 78789210 78789438 -148735140 - AluJo SINE Alu 0 312 79 271 333 104 11 chr3 78789453 78789636 -148734942 + L2 LINE L2 2312 2511 -803 1508 226 49 44 chr3 78789935 78790346 -148734232 - MLT2D LTR ERVL 0 414 2 1628 209 258 8 chr3 78790700 78791203 -148733375 - MLT1E1 LTR MaLR -2 652 24 441 227 0 0 chr3 78791229 78791317 -148733261 - MER103 DNA DNA -70 96 9 844 152 32 0 chr3 78791459 78791584 -148732994 + FLAM_C SINE Alu 1 129 -14 28 48 0 0 chr3 78791589 78791631 -148732947 + AT_rich Low_complexity Low_complexity 1 42 0 187 304 127 25 chr3 78791639 78791797 -148732781 + MIR SINE MIR 57 230 -32 2006 144 3 14 chr3 78791985 78792277 -148732301 + AluSx SINE Alu 1 289 -23 26 0 0 0 chr3 78792285 78792311 -148732267 + AT_rich Low_complexity Low_complexity 1 26 0 357 268 171 6 chr3 78792745 78792909 -148731669 + MIR SINE MIR 71 261 -1 2260 137 82 51 chr3 78792928 78793343 -148731235 - MSTA LTR MaLR 0 428 1 24 0 0 0 chr3 78793882 78793906 -148730672 + AT_rich Low_complexity Low_complexity 1 24 0 2313 104 7 0 chr3 78794333 78794642 -148729936 + AluSx SINE Alu 1 311 -1 384 307 87 0 chr3 78794680 78794830 -148729748 + MIR SINE MIR 60 222 -40 1390 276 46 5 chr3 78794863 78795236 -148729342 - LTR16C LTR ERVL -8 483 96 269 304 37 56 chr3 78796110 78796271 -148728307 + MIR SINE MIR 58 215 -47 1618 200 78 25 chr3 78796273 78796668 -148727910 + L1ME1 LINE L1 5746 6161 -5 584 301 53 48 chr3 78796967 78797362 -148727216 + LTR16A1 LTR ERVL 20 416 -41 282 313 129 21 chr3 78797383 78797616 -148726962 + MLT1K LTR MaLR 183 440 -148 21 0 0 0 chr3 78797720 78797741 -148726837 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 78798224 78798245 -148726333 + AT_rich Low_complexity Low_complexity 1 21 0 914 114 15 190 chr3 78798421 78798467 -148726111 + MER20 DNA MER1_type 2 54 -165 2308 118 77 3 chr3 78798467 78798806 -148725772 - THE1B LTR MaLR 0 364 1 914 114 15 190 chr3 78798806 78799022 -148725556 + MER20 DNA MER1_type 54 218 -1 440 276 70 50 chr3 78799095 78799294 -148725284 + MIR SINE MIR 30 232 -30 1966 145 0 0 chr3 78799378 78799682 -148724896 + AluSx SINE Alu 1 304 0 3121 112 23 30 chr3 78799908 78800381 -148724197 - L1PA16 LINE L1 0 6166 5697 22 56 0 0 chr3 78801064 78801100 -148723478 + AT_rich Low_complexity Low_complexity 1 36 0 283 125 34 114 chr3 78801112 78801148 -148723430 - L1ME4a LINE L1 -28 6093 6056 2327 113 0 0 chr3 78801148 78801458 -148723120 + AluSg SINE Alu 1 310 0 283 125 34 114 chr3 78801458 78801509 -148723069 - L1ME4a LINE L1 -65 6056 6013 626 191 0 0 chr3 78801800 78801905 -148722673 - L2 LINE L2 -13 3300 3196 855 223 49 5 chr3 78801928 78802112 -148722466 - MER58A DNA MER1_type 0 224 33 220 200 43 0 chr3 78802112 78802182 -148722396 + (TA)n Simple_repeat Simple_repeat 1 73 0 359 281 104 55 chr3 78802185 78802531 -148722047 - L1ME LINE L1 -490 5631 5276 691 314 78 51 chr3 78803609 78803844 -148720734 + LTR16C LTR ERVL 76 328 -163 201 39 0 0 chr3 78803844 78803870 -148720708 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 691 314 78 51 chr3 78803870 78804029 -148720549 + LTR16C LTR ERVL 328 481 -10 1042 174 50 30 chr3 78804084 78804285 -148720293 - MER3 DNA MER1_type -4 205 1 184 167 250 0 chr3 78804393 78804453 -148720125 + MIR SINE MIR 174 248 -14 450 340 148 10 chr3 78804675 78804966 -148719612 - L2 LINE L2 0 3272 2942 1757 97 0 0 chr3 78805154 78805381 -148719197 - AluSq SINE Alu -86 227 1 323 209 0 15 chr3 78805453 78805520 -148719058 + MER5A DNA MER1_type 60 125 -64 1843 165 9 19 chr3 78805562 78805877 -148718701 + AluJo SINE Alu 1 312 0 1631 191 86 9 chr3 78806438 78806753 -148717825 + MER2 DNA MER2_type 2 340 -4 213 256 0 0 chr3 78807531 78807574 -148717004 - MIR SINE MIR -61 147 105 367 301 68 0 chr3 78807680 78807783 -148716795 - MIR SINE MIR -98 164 55 297 297 102 17 chr3 78808158 78808276 -148716302 - MER5A DNA MER1_type -3 186 59 226 247 146 34 chr3 78808516 78808605 -148715973 - MIR SINE MIR -10 252 154 194 366 0 0 chr3 78808819 78808890 -148715688 - L2 LINE L2 -4 3309 3239 377 263 53 41 chr3 78809208 78809379 -148715199 + MER89 LTR ERV1 374 546 -13 360 170 14 184 chr3 78809569 78809716 -148714862 + MIR SINE MIR 79 200 -62 540 186 56 134 chr3 78809757 78809826 -148714752 + L1MC4 LINE L1 7030 7103 -939 2885 127 26 2 chr3 78809826 78810250 -148714328 + MER57B LTR ERV1 1 434 0 540 186 56 134 chr3 78810250 78810411 -148714167 + L1MC4 LINE L1 7103 7242 -800 21 0 0 0 chr3 78810432 78810453 -148714125 + AT_rich Low_complexity Low_complexity 1 21 0 493 268 55 24 chr3 78810617 78810781 -148713797 + MIR SINE MIR 50 218 -44 620 122 10 10 chr3 78810841 78810939 -148713639 + MER4A LTR ERV1 1 98 -566 1859 121 23 28 chr3 78810939 78811286 -148713292 + MER4A LTR ERV1 261 664 0 735 100 133 25 chr3 78811347 78811467 -148713111 - LTR12 LTR ERV1 0 714 582 5047 116 56 65 chr3 78811467 78812300 -148712278 - LTR12 LTR ERV1 0 826 1 194 269 39 0 chr3 78812433 78812485 -148712093 + L2 LINE L2 3005 3058 -255 221 215 0 13 chr3 78812788 78812867 -148711711 + CT-rich Low_complexity Low_complexity 3 80 0 452 286 0 24 chr3 78814617 78814743 -148709835 - MIR3 SINE MIR -17 191 69 427 308 33 62 chr3 78815429 78815702 -148708876 - L2 LINE L2 -20 3293 3029 705 234 73 36 chr3 78815717 78815965 -148708613 - L1ME3A LINE L1 -4 6166 5910 491 248 225 13 chr3 78816008 78816244 -148708334 - L2 LINE L2 -255 3058 2782 1973 153 7 0 chr3 78816723 78817023 -148707555 - AluSx SINE Alu -10 302 1 293 343 61 36 chr3 78818292 78818572 -148706006 + L2 LINE L2 2932 3218 -95 188 316 26 40 chr3 78818890 78818966 -148705612 - MIR SINE MIR -56 152 78 384 325 77 34 chr3 78819219 78819428 -148705150 + MIR SINE MIR 1 218 -44 336 271 35 88 chr3 78819533 78819703 -148704875 - MIR SINE MIR -8 254 94 23 0 0 0 chr3 78820212 78820235 -148704343 + AT_rich Low_complexity Low_complexity 1 23 0 327 328 73 26 chr3 78820466 78820698 -148703880 - L2 LINE L2 -464 2850 2608 313 262 12 24 chr3 78820742 78820826 -148703752 + MIR SINE MIR 34 116 -146 2099 131 7 0 chr3 78820877 78821183 -148703395 - AluSx SINE Alu -4 308 1 465 76 0 0 chr3 78821369 78821435 -148703143 + (TCCCC)n Simple_repeat Simple_repeat 1 66 0 23 33 0 0 chr3 78822265 78822295 -148702283 + AT_rich Low_complexity Low_complexity 1 30 0 31 0 0 0 chr3 78822784 78822815 -148701763 + AT_rich Low_complexity Low_complexity 1 31 0 2585 166 4 42 chr3 78822815 78823321 -148701257 - L1MB3 LINE L1 -8 6175 5689 1685 106 0 0 chr3 78823529 78823746 -148700832 + AluSx SINE Alu 9 225 -87 2669 154 94 17 chr3 78824015 78824536 -148700042 - MER6 DNA MER2_type -65 800 240 306 0 0 0 chr3 78824545 78824579 -148699999 + (CA)n Simple_repeat Simple_repeat 1 34 0 323 295 0 105 chr3 78824725 78824857 -148699721 - MIR SINE MIR 0 262 156 1601 189 0 31 chr3 78824857 78825175 -148699403 - AluJo SINE Alu -4 308 1 323 295 0 105 chr3 78825175 78825242 -148699336 - MIR SINE MIR -106 156 84 2193 137 42 95 chr3 78825305 78825787 -148698791 + MLT1C LTR MaLR 5 460 -7 285 114 23 0 chr3 78825787 78825831 -148698747 + MLT1C LTR MaLR 423 467 0 513 110 98 0 chr3 78825854 78825936 -148698642 - Charlie1 DNA MER1_type -2620 141 52 260 64 21 21 chr3 78825998 78826045 -148698533 + HSMAR1 DNA Mariner 2 48 -1239 420 349 75 10 chr3 78826127 78826419 -148698159 + MARNA DNA Mariner 164 474 -112 188 352 37 0 chr3 78827142 78827196 -148697382 - L2 LINE L2 -16 3256 3201 630 277 38 0 chr3 78827225 78827409 -148697169 - MER113 DNA MER1_type? 0 521 331 636 286 69 0 chr3 78827669 78827900 -148696678 - LTR16C LTR ERVL -26 465 219 244 208 19 0 chr3 78828085 78828138 -148696440 + MIR SINE MIR 69 122 -140 288 333 26 0 chr3 78828382 78828496 -148696082 + MLT1J1 LTR MaLR 3 119 -327 351 277 74 20 chr3 78828524 78828672 -148695906 - MLT1L LTR MaLR -310 305 150 520 269 75 92 chr3 78829184 78829411 -148695167 - MIR SINE MIR -20 242 20 1098 91 0 14 chr3 78830702 78830845 -148693733 + AluY SINE Alu 1 141 -170 2525 60 0 0 chr3 78830846 78831144 -148693434 + AluY SINE Alu 1 298 -13 1203 234 43 87 chr3 78831519 78832035 -148692543 + L1ME LINE L1 28 520 -5550 433 245 277 13 chr3 78832434 78832593 -148691985 - MIR SINE MIR -3 259 59 36 0 0 0 chr3 78833072 78833108 -148691470 + AT_rich Low_complexity Low_complexity 1 36 0 540 100 0 0 chr3 78833127 78833197 -148691381 - AluJ/FLAM SINE Alu -242 70 1 226 365 64 6 chr3 78833357 78833513 -148691065 + L3 LINE CR1 948 1112 -465 22 35 0 0 chr3 78833583 78833612 -148690966 + AT_rich Low_complexity Low_complexity 1 29 0 376 292 39 8 chr3 78833612 78833742 -148690836 + L1ME LINE L1 81 214 -5856 312 250 250 0 chr3 78834671 78834799 -148689779 + MIR SINE MIR 8 167 -95 182 254 91 18 chr3 78834880 78834935 -148689643 - MIR SINE MIR -190 72 14 188 308 0 19 chr3 78834951 78835003 -148689575 + L2 LINE L2 3202 3252 -20 1921 166 0 0 chr3 78835015 78835305 -148689273 + AluSx SINE Alu 1 290 -22 280 287 154 15 chr3 78835630 78835766 -148688812 - L2 LINE L2 -6 3266 3112 301 232 9 107 chr3 78835807 78835851 -148688727 - MER58B DNA MER1_type -2080 340 293 2158 130 3 0 chr3 78835851 78836152 -148688426 - AluSx SINE Alu -10 302 1 301 232 9 107 chr3 78836152 78836219 -148688359 - MER58B DNA MER1_type -2127 293 240 394 227 242 0 chr3 78836501 78836629 -148687949 - MER58B DNA MER1_type -4 337 179 245 270 102 36 chr3 78836691 78836828 -148687750 + MER117 DNA MER1_type 8 153 -44 319 165 165 35 chr3 78837590 78837675 -148686903 + MER21B LTR ERV1 1 96 -767 1341 229 174 18 chr3 78837731 78838335 -148686243 + MER21B LTR ERV1 94 855 -76 2295 104 77 0 chr3 78838632 78838970 -148685608 - THE1B LTR MaLR 0 364 1 381 231 58 19 chr3 78839171 78839275 -148685303 - L2 LINE L2 -5 3308 3201 567 261 105 49 chr3 78839382 78839688 -148684890 - LTR50 LTR ERVL -2 793 471 599 199 89 31 chr3 78839801 78839992 -148684586 - LTR50 LTR ERVL -592 203 2 226 240 72 48 chr3 78840271 78840396 -148684182 + MER103 DNA DNA 37 164 -2 2550 59 0 0 chr3 78840561 78840864 -148683714 - AluY SINE Alu -7 304 2 2076 52 105 0 chr3 78841206 78841473 -148683105 + AluY SINE Alu 1 295 -16 2335 103 0 3 chr3 78843968 78844280 -148680298 - AluY SINE Alu 0 311 1 219 167 0 0 chr3 78844382 78844424 -148680154 + (TA)n Simple_repeat Simple_repeat 2 43 0 25 51 0 0 chr3 78844778 78844817 -148679761 + AT_rich Low_complexity Low_complexity 1 39 0 2491 154 26 2 chr3 78845610 78846025 -148678553 - MSTC LTR MaLR 0 428 4 214 303 42 17 chr3 78846151 78846270 -148678308 + L2 LINE L2 2460 2581 -733 922 161 12 0 chr3 78846314 78846476 -148678102 + MER58B DNA MER1_type 174 337 -4 613 341 139 25 chr3 78846511 78846884 -148677694 + L2 LINE L2 2667 3125 -188 2153 131 0 3 chr3 78846884 78847197 -148677381 - AluSx SINE Alu 0 312 1 613 341 139 25 chr3 78847197 78847410 -148677168 + L2 LINE L2 3125 3312 -1 489 332 52 8 chr3 78848058 78848308 -148676270 + MIR SINE MIR 2 262 0 22 0 0 0 chr3 78848442 78848464 -148676114 + AT_rich Low_complexity Low_complexity 1 22 0 390 202 39 48 chr3 78848916 78849020 -148675558 + MIR SINE MIR 47 149 -113 2143 117 3 0 chr3 78849069 78849359 -148675219 - AluSc SINE Alu -18 291 1 549 252 49 7 chr3 78849642 78849785 -148674793 - MIR SINE MIR 0 262 114 43 35 0 0 chr3 78850904 78850961 -148673617 + AT_rich Low_complexity Low_complexity 1 57 0 255 215 21 65 chr3 78851210 78851303 -148673275 - MLT1I LTR MaLR -13 396 308 429 275 70 39 chr3 78851547 78851776 -148672802 - L1ME LINE L1 -374 5788 5553 333 62 0 0 chr3 78851847 78851895 -148672683 + (TG)n Simple_repeat Simple_repeat 2 49 0 362 254 16 63 chr3 78852615 78852741 -148671837 + MIR3 SINE MIR 36 155 -53 186 333 0 0 chr3 78853304 78853361 -148671217 + MIR3 SINE MIR 144 200 -8 479 304 70 29 chr3 78853803 78854076 -148670502 - MLT1I LTR MaLR -20 389 106 3033 221 26 17 chr3 78854089 78854777 -148669801 + MER21B LTR ERV1 1 694 -169 1795 188 0 0 chr3 78855124 78855422 -148669156 - AluJo SINE Alu -14 298 1 246 293 50 79 chr3 78856463 78856603 -148667975 - L2 LINE L2 0 3272 3137 677 230 35 83 chr3 78857480 78857710 -148666868 - L1MD3 LINE L1 0 7995 6139 1887 163 3 13 chr3 78858522 78858823 -148665755 + AluJo SINE Alu 1 298 -14 243 351 86 13 chr3 78859333 78859484 -148665094 + MIR SINE MIR 20 181 -81 2330 128 34 0 chr3 78859494 78859846 -148664732 - THE1B LTR MaLR 0 364 1 1459 179 16 9 chr3 78859989 78860307 -148664271 - MER33 DNA MER1_type -3 321 2 394 247 144 0 chr3 78860618 78860715 -148663863 - L2 LINE L2 -12 3301 3191 1751 160 48 20 chr3 78861274 78861568 -148663010 - AluJo SINE Alu -10 302 1 204 214 0 0 chr3 78861796 78861838 -148662740 + (TG)n Simple_repeat Simple_repeat 1 42 0 242 250 73 42 chr3 78862946 78863042 -148661536 - MIR SINE MIR -120 142 44 418 218 25 119 chr3 78864440 78864683 -148659895 + LTR67 LTR ERVL 338 557 0 248 299 0 0 chr3 78865267 78865334 -148659244 - MIR SINE MIR -18 244 178 1686 143 7 21 chr3 78865483 78865769 -148658809 - AluSx SINE Alu 0 312 31 310 229 39 46 chr3 78866097 78866250 -148658328 - L1ME4a LINE L1 -4 6117 5966 26 98 0 0 chr3 78866358 78866440 -148658138 + AT_rich Low_complexity Low_complexity 1 82 0 362 284 75 35 chr3 78867904 78868387 -148656191 - L1M4 LINE L1 -1569 4577 4076 408 256 116 48 chr3 78868391 78868598 -148655980 + L2 LINE L2 3001 3221 -92 252 297 17 0 chr3 78868680 78868798 -148655780 - L1 LINE L1 -1882 4264 4145 279 247 40 7 chr3 78869065 78869215 -148655363 + (TA)n Simple_repeat Simple_repeat 1 155 0 762 312 29 20 chr3 78871291 78871801 -148652777 - L1MC4 LINE L1 -1 8038 7483 309 303 50 0 chr3 78872065 78872184 -148652394 - MLT1J2 LTR MaLR -319 131 7 184 338 29 0 chr3 78872301 78872369 -148652209 + MIR SINE MIR 111 180 -82 545 312 38 5 chr3 78873535 78873721 -148650857 + MIR SINE MIR 29 220 -42 505 257 180 5 chr3 78873839 78874045 -148650533 + MIR SINE MIR 12 253 -9 344 305 8 8 chr3 78874294 78874422 -148650156 - MER94 DNA DNA -3 131 4 2116 124 0 3 chr3 78874503 78874802 -148649776 + AluSx SINE Alu 1 298 -14 1426 113 0 0 chr3 78874906 78875100 -148649478 - AluSg SINE Alu -116 194 1 317 314 83 83 chr3 78876037 78876279 -148648299 - L2 LINE L2 -1 3271 3030 407 274 160 17 chr3 78876927 78877223 -148647355 - L2 LINE L2 -259 3054 2723 383 238 12 0 chr3 78879276 78879356 -148645222 + MIR SINE MIR 35 115 -147 241 292 83 0 chr3 78879360 78879432 -148645146 - MIR SINE MIR -183 79 2 2286 108 3 13 chr3 78880140 78880456 -148644122 - AluSq SINE Alu 0 313 1 238 298 185 7 chr3 78880861 78881012 -148643566 - L2 LINE L2 -368 2946 2769 21 36 0 0 chr3 78881017 78881045 -148643533 + AT_rich Low_complexity Low_complexity 1 28 0 2435 104 3 3 chr3 78881136 78881491 -148643087 + THE1C LTR MaLR 2 356 -19 264 194 16 0 chr3 78881528 78881590 -148642988 + L1ME LINE L1 5784 5846 -320 280 146 85 73 chr3 78881692 78881712 -148642866 - L1ME LINE L1 -504 5662 5644 1583 216 150 58 chr3 78881712 78882285 -148642293 + MLT1E2 LTR MaLR 1 626 0 280 146 85 73 chr3 78882285 78882346 -148642232 - L1ME LINE L1 -522 5644 5580 395 206 184 0 chr3 78882349 78882490 -148642088 - L2 LINE L2 -573 2741 2575 2853 111 5 0 chr3 78882951 78883376 -148641202 + L1PA15 LINE L1 5456 5882 -283 333 327 90 40 chr3 78883797 78884020 -148640558 + L2 LINE L2 3034 3267 -5 343 189 18 18 chr3 78887109 78887220 -148637358 + (TA)n Simple_repeat Simple_repeat 1 111 0 590 325 70 10 chr3 78888777 78889091 -148635487 - L2 LINE L2 -250 3063 2734 324 195 11 46 chr3 78889423 78889510 -148635068 - MLT1H LTR MaLR -453 96 13 311 319 57 49 chr3 78889510 78889552 -148635026 - L2 LINE L2 -591 2723 2683 580 227 9 0 chr3 78889552 78889662 -148634916 + MER81 DNA DNA 3 113 -1 311 319 57 49 chr3 78889662 78889882 -148634696 - L2 LINE L2 -631 2683 2459 213 65 0 0 chr3 78890581 78890612 -148633966 + (T)n Simple_repeat Simple_repeat 1 31 0 251 341 12 0 chr3 78890773 78890858 -148633720 + MIR SINE MIR 68 153 -109 444 301 38 55 chr3 78891127 78891363 -148633215 + MIR SINE MIR 31 262 0 2773 76 3 0 chr3 78891583 78891937 -148632641 - THE1A LTR MaLR 0 355 1 2773 132 12 5 chr3 78892553 78892976 -148631602 - MSTB LTR MaLR 0 426 1 21 36 0 0 chr3 78893093 78893121 -148631457 + AT_rich Low_complexity Low_complexity 1 28 0 191 242 51 26 chr3 78893166 78893243 -148631335 - MIR SINE MIR -73 135 74 811 275 154 68 chr3 78893245 78893790 -148630788 - MER115 DNA AcHobo -4 689 98 1581 177 11 4 chr3 78894126 78894397 -148630181 - AluSx SINE Alu -39 273 1 475 309 27 54 chr3 78894786 78895045 -148629533 - L1ME4a LINE L1 -139 5982 5731 396 302 53 53 chr3 78895482 78895727 -148628851 - L2 LINE L2 -4 3268 3024 294 364 71 29 chr3 78896050 78896190 -148628388 + L2 LINE L2 3112 3257 -15 24 0 0 0 chr3 78896420 78896444 -148628134 + AT_rich Low_complexity Low_complexity 1 24 0 1482 118 41 0 chr3 78896485 78896706 -148627872 + MER30 DNA MER1_type 1 230 0 2444 80 3 6 chr3 78897310 78897622 -148626956 - AluY SINE Alu 0 311 1 232 273 13 0 chr3 78897770 78897847 -148626731 - L1MC/D LINE L1 -1965 5843 5766 204 77 77 0 chr3 78898161 78898200 -148626378 + (TATG)n Simple_repeat Simple_repeat 2 43 0 32 43 0 0 chr3 78898200 78898246 -148626332 + AT_rich Low_complexity Low_complexity 1 46 0 359 333 23 35 chr3 78898468 78898639 -148625939 - MIR SINE MIR 0 262 94 2315 112 0 0 chr3 78898722 78899027 -148625551 + AluSx SINE Alu 1 305 -7 235 276 168 7 chr3 78900702 78900845 -148623733 - MIR SINE MIR -54 208 44 829 160 13 0 chr3 78900866 78901016 -148623562 - MLT1C LTR MaLR 0 467 316 702 195 49 38 chr3 78901017 78901202 -148623376 - MLT1C LTR MaLR -280 187 1 1930 126 26 0 chr3 78901245 78901554 -148623024 - L1MC1 LINE L1 -1 6332 6016 1773 158 27 37 chr3 78901663 78902037 -148622541 + THE1C LTR MaLR 6 375 0 369 308 76 41 chr3 78903452 78903624 -148620954 - MER5B DNA MER1_type 0 178 1 911 219 29 138 chr3 78903899 78904341 -148620237 - L1MC4 LINE L1 -1188 6854 6461 352 261 43 0 chr3 78904588 78904680 -148619898 + MLT1J LTR MaLR 70 165 -346 281 238 35 77 chr3 78904730 78904873 -148619705 + MLT1J LTR MaLR 373 509 -2 26 50 0 0 chr3 78905866 78905906 -148618672 + AT_rich Low_complexity Low_complexity 1 40 0 670 296 23 23 chr3 78906646 78906866 -148617712 - MIR SINE MIR -11 251 32 423 58 14 0 chr3 78907250 78907319 -148617259 - AluSp/q SINE Alu 0 313 244 235 235 112 29 chr3 78907529 78907654 -148616924 + MIR3 SINE MIR 48 177 -31 416 309 56 45 chr3 78908550 78908728 -148615850 - MIR SINE MIR -70 192 13 1610 162 71 34 chr3 78908824 78909121 -148615457 + AluJb SINE Alu 1 308 -4 301 309 54 40 chr3 78909815 78909964 -148614614 - HAL1b LINE L1 0 1348 1198 341 250 0 10 chr3 78910781 78910881 -148613697 + L1ME2 LINE L1 6054 6152 -12 27 49 0 0 chr3 78910918 78910959 -148613619 + AT_rich Low_complexity Low_complexity 1 41 0 321 290 105 25 chr3 78910970 78911170 -148613408 + L1MC4 LINE L1 7826 8041 -1 282 320 94 16 chr3 78911209 78911337 -148613241 + MIR SINE MIR 17 154 -108 1468 192 101 21 chr3 78912084 78912422 -148612156 - MLT1A1 LTR MaLR 0 365 1 1189 135 0 0 chr3 78912531 78912701 -148611877 - AluSg/x SINE Alu -9 303 134 2269 100 0 0 chr3 78912701 78913000 -148611578 - AluSx SINE Alu -13 299 1 184 197 15 30 chr3 78913700 78913766 -148610812 + GA-rich Low_complexity Low_complexity 2 66 0 1810 130 90 31 chr3 78914839 78915193 -148609385 - THE1C LTR MaLR 0 375 1 1732 125 19 84 chr3 78915791 78916111 -148608467 - AluJb SINE Alu -13 299 1 12266 138 33 67 chr3 78916247 78917299 -148607279 - L1P LINE L1 -3248 2898 1812 2327 90 3 19 chr3 78917299 78917609 -148606969 + AluSp SINE Alu 1 305 -8 12266 138 33 67 chr3 78917609 78919155 -148605423 - L1P LINE L1 -4334 1812 388 16571 100 3 30 chr3 78919177 78922424 -148602154 + L1PA7 LINE L1 2917 6149 -5 244 235 17 61 chr3 78922464 78922579 -148601999 - L1ME LINE L1 -365 5801 5692 952 248 99 11 chr3 78923531 78923813 -148600765 + MLT2E LTR ERVL 1 307 -321 337 127 0 0 chr3 78923813 78923868 -148600710 - MSTB1 LTR MaLR 0 432 378 28 0 0 0 chr3 78923868 78923896 -148600682 + AT_rich Low_complexity Low_complexity 1 28 0 711 157 0 0 chr3 78923911 78924032 -148600546 - MSTB1 LTR MaLR -311 121 1 505 245 46 13 chr3 78924115 78924266 -148600312 + MLT2E LTR ERVL 469 624 -4 252 0 0 0 chr3 78924672 78924700 -148599878 + (T)n Simple_repeat Simple_repeat 1 28 0 25 0 0 0 chr3 78924740 78924765 -148599813 + AT_rich Low_complexity Low_complexity 1 25 0 21 57 0 0 chr3 78924868 78924903 -148599675 + AT_rich Low_complexity Low_complexity 1 35 0 1563 137 111 11 chr3 78925925 78926195 -148598383 - AluSg SINE Alu -13 297 1 27 0 0 0 chr3 78926313 78926340 -148598238 + AT_rich Low_complexity Low_complexity 1 27 0 3315 218 55 10 chr3 78927549 78928886 -148595692 - L1MB8 LINE L1 -6 6172 4777 1793 223 102 28 chr3 78928886 78929340 -148595238 + MLT1E2 LTR MaLR 1 507 -119 1845 140 61 15 chr3 78929340 78929668 -148594910 - MER61A LTR ERV1 0 343 1 1793 223 102 28 chr3 78929668 78929783 -148594795 + MLT1E2 LTR MaLR 507 612 -14 2418 228 30 21 chr3 78929815 78930544 -148594034 - L1MB8 LINE L1 -1384 4762 4027 301 359 56 26 chr3 78931578 78931812 -148592766 - MIR SINE MIR -10 252 12 1103 136 30 102 chr3 78931870 78932106 -148592472 - MER20 DNA MER1_type 0 219 1 1064 268 42 48 chr3 78932306 78932661 -148591917 - MER77 LTR ERV1 -1 604 252 1802 177 44 36 chr3 78932963 78933348 -148591230 - MLT1B LTR MaLR -2 388 1 1841 201 76 24 chr3 78933386 78933808 -148590770 - MLT1B-int LTR MaLR -30 1341 898 183 333 0 0 chr3 78933912 78933963 -148590615 - L2 LINE L2 -107 3165 3115 2549 14 0 0 chr3 78934334 78934642 -148589936 - AluY SINE Alu 0 308 1 252 0 0 0 chr3 78936159 78936187 -148588391 + (T)n Simple_repeat Simple_repeat 1 28 0 1963 136 3 3 chr3 78938536 78938823 -148585755 + AluSx SINE Alu 17 303 -9 266 332 48 34 chr3 78939826 78940034 -148584544 - MIR SINE MIR -44 218 8 479 316 117 5 chr3 78940625 78940821 -148583757 - MIR SINE MIR -37 225 8 181 0 33 33 chr3 78940953 78940983 -148583595 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 324 282 73 0 chr3 78943349 78943459 -148581119 - MIR SINE MIR -60 148 31 346 266 128 0 chr3 78943494 78943588 -148580990 - MER45A DNA AcHobo -1 177 72 642 48 0 0 chr3 78943854 78943938 -148580640 - L1MA2 LINE L1 -2 6302 6219 2442 145 53 13 chr3 78943947 78944416 -148580162 - L1MC/D LINE L1 -421 6215 5728 1145 161 118 75 chr3 78944418 78944547 -148580031 + MLT1A1 LTR MaLR 1 123 -242 1389 117 40 5 chr3 78944547 78944769 -148579809 - MER30 DNA MER1_type 0 230 1 1145 161 118 75 chr3 78944769 78944986 -148579592 + MLT1A1 LTR MaLR 123 362 -3 2837 256 33 19 chr3 78944992 78945974 -148578604 - L1MC/D LINE L1 -813 5727 4733 333 253 0 0 chr3 78945971 78946046 -148578532 - L1MC/D LINE L1 -2564 3976 3902 * 1336 208 11 25 chr3 78946031 78946310 -148578268 - L1MC/D LINE L1 -6251 289 15 292 259 112 9 chr3 78946497 78946613 -148577965 - MER5C DNA MER1_type -193 131 4 834 73 106 8 chr3 78947811 78947934 -148576644 + AluYa5 SINE Alu 1 135 -176 2507 58 3 6 chr3 78947934 78948245 -148576333 + AluY SINE Alu 1 310 -1 469 306 55 38 chr3 78948333 78948553 -148576025 + L1MC/D LINE L1 5530 5757 -399 1475 179 55 18 chr3 78948553 78948870 -148575708 + AluJo SINE Alu 1 327 0 469 306 55 38 chr3 78948870 78948951 -148575627 + L1MC/D LINE L1 5757 5835 -321 1871 127 3 72 chr3 78948979 78949310 -148575268 + AluSx SINE Alu 1 308 -4 371 289 28 109 chr3 78949419 78949630 -148574948 + MER91A DNA MER1_type 3 196 0 216 302 0 0 chr3 78950632 78950695 -148573883 + CT-rich Low_complexity Low_complexity 4 66 0 2497 180 104 7 chr3 79000819 79001398 -148523180 + L1MD2 LINE L1 5713 6347 -12 22 0 0 73 chr3 79001603 79001625 -148522953 + AT_rich Low_complexity Low_complexity 1 20 -18 2622 45 0 0 chr3 79001625 79001933 -148522645 + AluY SINE Alu 1 308 -3 22 0 0 73 chr3 79001933 79001951 -148522627 + AT_rich Low_complexity Low_complexity 20 38 0 6568 211 19 8 chr3 79002125 79003144 -148521434 - L1PA16 LINE L1 -2 6164 5158 306 0 0 0 chr3 79003144 79003178 -148521400 + (TTG)n Simple_repeat Simple_repeat 3 36 0 6568 211 19 8 chr3 79003178 79004559 -148520019 - L1PA16 LINE L1 -1008 5158 3784 489 194 50 43 chr3 79004669 79004829 -148519749 + L1ME1 LINE L1 5738 5908 -256 4054 239 38 29 chr3 79004830 79004857 -148519721 + L1M4 LINE L1 2714 2739 -3407 2292 178 21 23 chr3 79004857 79005284 -148519294 + MSTB LTR MaLR 1 426 0 4054 239 38 29 chr3 79005284 79006693 -148517885 + L1M4 LINE L1 2739 4162 -1984 401 104 30 0 chr3 79006701 79006768 -148517810 + GA-rich Low_complexity Low_complexity 2 70 0 3624 199 41 63 chr3 79006768 79008009 -148516569 + L1M4 LINE L1 4146 5359 -787 1943 41 4 37 chr3 79008110 79008356 -148516222 + AluY SINE Alu 63 300 -11 490 205 16 25 chr3 79009538 79009660 -148514918 + MER117 DNA MER1_type 5 125 -72 903 254 47 0 chr3 79009891 79010104 -148514474 - MER58A DNA MER1_type 0 224 2 273 343 139 0 chr3 79010994 79011131 -148513447 - MIR3 SINE MIR -11 197 42 * 355 261 176 0 chr3 79011120 79011239 -148513339 + MIR SINE MIR 119 258 -4 890 294 42 7 chr3 79011653 79011942 -148512636 - MER58B DNA MER1_type -39 302 4 532 245 34 7 chr3 79012768 79012915 -148511663 - MIR SINE MIR -38 224 74 2898 196 91 47 chr3 79014615 79014970 -148509608 - Charlie1 DNA MER1_type -54 2707 2369 723 167 18 0 chr3 79014970 79015120 -148509458 - FLAM_C SINE Alu 0 152 1 2898 196 91 47 chr3 79015120 79015823 -148508755 - Charlie1 DNA MER1_type -392 2369 1600 12810 34 2 1 chr3 79015837 79018158 -148506420 - L1PA3 LINE L1 -3 6152 3829 1051 279 81 10 chr3 79018499 79018883 -148505695 + LTR16A1 LTR ERVL 24 434 -23 1143 210 29 12 chr3 79018945 79019188 -148505390 + MLT1A1 LTR MaLR 119 365 0 280 301 0 0 chr3 79019188 79019261 -148505317 + (TG)n Simple_repeat Simple_repeat 1 73 0 257 0 30 0 chr3 79019584 79019617 -148504961 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 2308 102 0 0 chr3 79020848 79021143 -148503435 - AluSq SINE Alu -18 295 1 519 317 136 41 chr3 79021640 79022132 -148502446 - L2 LINE L2 -384 2930 2392 2248 124 0 0 chr3 79025162 79025468 -148499110 + AluSx SINE Alu 1 306 -6 2132 141 0 0 chr3 79026433 79026739 -148497839 + AluSx SINE Alu 1 306 -6 263 283 30 12 chr3 79027035 79027201 -148497377 + (TA)n Simple_repeat Simple_repeat 2 170 0 419 287 107 66 chr3 79027752 79028118 -148496460 - L2 LINE L2 -80 3233 2853 346 310 57 23 chr3 79028731 79029019 -148495559 + L1ME LINE L1 5353 5659 -462 1730 203 0 13 chr3 79029331 79029636 -148494942 + AluJo SINE Alu 1 301 -11 22 35 0 0 chr3 79030758 79030787 -148493791 + AT_rich Low_complexity Low_complexity 1 29 0 391 289 73 28 chr3 79032170 79032388 -148492190 - MLT1J LTR MaLR -283 228 1 1545 171 31 21 chr3 79032764 79033051 -148491527 + AluJo SINE Alu 23 312 0 1201 124 23 51 chr3 79033470 79033687 -148490891 + MER20 DNA MER1_type 4 214 -5 334 229 185 57 chr3 79033841 79033998 -148490580 + MIR SINE MIR 53 229 -33 531 256 6 57 chr3 79034078 79034254 -148490324 + MER69A DNA AcHobo 1 167 -10 240 218 18 52 chr3 79035343 79035440 -148489138 + MIR SINE MIR 83 177 -62 453 338 59 5 chr3 79035540 79035762 -148488816 + L2 LINE L2 2219 2452 -862 335 354 86 6 chr3 79036507 79036682 -148487896 - MIR3 SINE MIR -4 204 16 1848 166 66 3 chr3 79038307 79038626 -148485952 + MER44D DNA MER2_type 1 609 0 27 62 0 0 chr3 79039119 79039167 -148485411 + AT_rich Low_complexity Low_complexity 1 48 0 282 261 0 0 chr3 79039226 79039291 -148485287 + L1ME4a LINE L1 5549 5613 -508 470 169 11 34 chr3 79040090 79040179 -148484399 + MER20 DNA MER1_type 131 217 -2 2176 138 0 0 chr3 79040247 79040559 -148484019 + AluSq SINE Alu 1 312 -1 1032 223 105 56 chr3 79040626 79041053 -148483525 + HAL1b LINE L1 71 518 -830 448 296 80 57 chr3 79041068 79041392 -148483186 + L1ME4a LINE L1 5725 6061 -60 1103 204 43 9 chr3 79041392 79041603 -148482975 + MER20 DNA MER1_type 2 219 0 448 296 80 57 chr3 79041603 79041666 -148482912 + L1ME4a LINE L1 6061 6121 0 22 0 0 0 chr3 79041722 79041744 -148482834 + AT_rich Low_complexity Low_complexity 1 22 0 353 115 0 0 chr3 79042789 79042850 -148481728 - Alu SINE Alu 0 300 240 995 83 0 0 chr3 79042852 79042973 -148481605 - AluY SINE Alu -190 121 1 6011 222 71 14 chr3 79043839 79045322 -148479256 - L1MDa LINE L1 -4890 1650 83 2246 90 27 0 chr3 79046216 79046516 -148478062 - AluY SINE Alu -3 308 1 1006 166 5 5 chr3 79047214 79047401 -148477177 - L1MA4 LINE L1 -6 6294 6108 733 302 14 36 chr3 79047591 79047866 -148476712 + LTR16C LTR ERVL 1 269 -222 309 26 0 0 chr3 79047926 79047964 -148476614 + (TG)n Simple_repeat Simple_repeat 2 39 0 231 284 9 46 chr3 79047964 79047996 -148476582 + (TA)n Simple_repeat Simple_repeat 1 33 -72 1663 170 28 21 chr3 79047996 79048284 -148476294 - AluJo SINE Alu -22 290 1 231 284 9 46 chr3 79048284 79048360 -148476218 + (TA)n Simple_repeat Simple_repeat 33 105 0 453 263 0 0 chr3 79051511 79051610 -148472968 + MER103 DNA DNA 18 116 -50 183 250 0 50 chr3 79052169 79052229 -148472349 + L2 LINE L2 3170 3226 -87 709 307 40 24 chr3 79052927 79053178 -148471400 + MIR SINE MIR 8 262 0 1174 224 150 9 chr3 79053266 79053696 -148470882 - MLT1E LTR MaLR -8 585 2 426 232 9 27 chr3 79053700 79053812 -148470766 + MIR SINE MIR 143 252 -10 729 226 81 48 chr3 79054416 79054869 -148469709 + MLT1G1 LTR MaLR 8 595 0 399 305 97 78 chr3 79054890 79055211 -148469367 - L2 LINE L2 -107 3165 2839 228 186 68 17 chr3 79055260 79055319 -148469259 - L1M2b LINE L1 -6677 532 471 1535 380 54 0 chr3 79055426 79055794 -148468784 - MSTD LTR MaLR -3 393 6 312 297 91 6 chr3 79055981 79056156 -148468422 - L3b LINE CR1 -180 1403 1214 373 296 23 0 chr3 79056371 79056459 -148468119 - MER5B DNA MER1_type 0 178 89 5534 159 84 84 chr3 79056468 79056864 -148467714 + L1MC3 LINE L1 6457 6852 -933 264 59 0 0 chr3 79056864 79056898 -148467680 + (CA)n Simple_repeat Simple_repeat 2 35 0 5534 159 84 84 chr3 79056898 79057118 -148467460 + L1MC3 LINE L1 6852 7071 -714 236 329 0 0 chr3 79057118 79057197 -148467381 + MLT1F1 LTR MaLR 36 114 -453 5534 159 84 84 chr3 79057197 79057444 -148467134 + L1MC3 LINE L1 7071 7317 -468 1797 144 93 37 chr3 79057444 79057799 -148466779 - THE1C LTR MaLR 0 375 1 5534 159 84 84 chr3 79057799 79058184 -148466394 + L1MC3 LINE L1 7316 7785 0 2189 127 7 0 chr3 79059961 79060269 -148464309 - AluSx SINE Alu -2 310 1 400 296 6 81 chr3 79060443 79060615 -148463963 + MIR SINE MIR 34 192 -70 201 241 93 19 chr3 79061220 79061274 -148463304 + L2 LINE L2 3142 3199 -73 226 341 15 45 chr3 79061286 79061418 -148463160 + MIR3 SINE MIR 9 136 -72 288 250 50 50 chr3 79061465 79061585 -148462993 - MIR SINE MIR -13 249 130 1669 285 67 30 chr3 79061611 79061889 -148462689 + L2 LINE L2 2119 2385 -929 1963 161 68 39 chr3 79061889 79062274 -148462304 + MSTD LTR MaLR 1 396 0 1669 285 67 30 chr3 79062274 79062564 -148462014 + L2 LINE L2 2385 2708 -606 789 127 0 0 chr3 79062582 79062685 -148461893 - MSTA LTR MaLR -2 426 324 2035 165 35 45 chr3 79062685 79063244 -148461334 + MLT2A2 LTR ERVL 1 554 0 457 120 110 30 chr3 79063256 79063356 -148461222 - MSTA LTR MaLR -132 296 189 18691 40 4 1 chr3 79063356 79066299 -148458279 - L1PA5 LINE L1 -1 6153 3206 2209 124 0 3 chr3 79066299 79066645 -148457933 + L1P LINE L1 2788 3132 -3014 317 177 139 0 chr3 79066646 79066725 -148457853 - MSTA LTR MaLR -225 203 114 2448 111 48 11 chr3 79066905 79067256 -148457322 - THE1B LTR MaLR 0 364 1 215 242 32 0 chr3 79067432 79067494 -148457084 + CT-rich Low_complexity Low_complexity 2 65 0 610 193 0 9 chr3 79073172 79073281 -148451297 + Charlie1 DNA MER1_type 1422 1529 -1232 882 208 0 0 chr3 79073282 79073436 -148451142 - FRAM SINE Alu -20 156 3 31865 44 1 2 chr3 79073489 79077347 -148447231 + L1P LINE L1 1 3854 -2292 25 51 0 0 chr3 79077778 79077817 -148446761 + AT_rich Low_complexity Low_complexity 1 39 0 257 0 0 29 chr3 79078371 79078405 -148446173 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 950 129 43 0 chr3 79078434 79078574 -148446004 - AluJb SINE Alu -36 276 131 245 153 0 17 chr3 79078858 79078917 -148445661 + CT-rich Low_complexity Low_complexity 2 59 0 1968 126 7 3 chr3 79080363 79080648 -148443930 + AluSx SINE Alu 5 290 -22 1987 268 43 32 chr3 79080859 79081446 -148443132 - MLT1E LTR MaLR 0 593 1 717 223 86 123 chr3 79081461 79081651 -148442927 - MLT1J1 LTR MaLR 0 446 251 1822 188 0 0 chr3 79081651 79081955 -148442623 + AluJb SINE Alu 1 304 -8 717 223 86 123 chr3 79081955 79082227 -148442351 - MLT1J1 LTR MaLR -195 251 1 788 230 61 0 chr3 79082378 79082574 -148442004 + MIR SINE MIR 52 259 -3 302 349 18 28 chr3 79082614 79082723 -148441855 - MIR SINE MIR -136 126 19 22 0 0 0 chr3 79084268 79084290 -148440288 + AT_rich Low_complexity Low_complexity 1 22 0 246 329 72 0 chr3 79085681 79085833 -148438745 - MLT1K LTR MaLR -136 452 290 215 286 29 0 chr3 79085844 79085914 -148438664 + GA-rich Low_complexity Low_complexity 2 73 0 364 35 88 18 chr3 79086096 79086153 -148438425 + THE1C LTR MaLR 1 49 -326 939 172 146 0 chr3 79086568 79086760 -148437818 + MER58A DNA MER1_type 3 222 -2 221 345 136 0 chr3 79087221 79087331 -148437247 - MIR SINE MIR -73 189 65 520 231 201 0 chr3 79087382 79087551 -148437027 + MER3 DNA MER1_type 7 209 0 519 303 109 9 chr3 79087609 79087820 -148436758 - MIR SINE MIR -11 251 20 544 248 81 10 chr3 79088771 79088969 -148435609 - L1MDa LINE L1 -6240 300 89 991 249 39 68 chr3 79089692 79090105 -148434473 - LTR16A1 LTR ERVL 0 457 57 430 297 28 124 chr3 79090160 79090661 -148433917 - L2 LINE L2 -38 3275 2823 1092 284 97 8 chr3 79090669 79091154 -148433424 - MLT1H LTR MaLR -16 533 6 484 228 37 0 chr3 79092727 79092863 -148431715 - MLT1L LTR MaLR 0 615 475 492 239 74 58 chr3 79092902 79093145 -148431433 - MLT1L LTR MaLR -223 392 146 430 279 92 30 chr3 79093158 79093754 -148430824 - L1M4 LINE L1 -2828 3318 2686 207 0 0 0 chr3 79093883 79093906 -148430672 + (TG)n Simple_repeat Simple_repeat 2 24 0 550 325 73 26 chr3 79093920 79094262 -148430316 - L1M4 LINE L1 -3679 2467 2110 290 297 27 0 chr3 79094352 79094463 -148430115 + MLT1E1-int LTR MaLR 1258 1371 0 2228 185 76 86 chr3 79094463 79095124 -148429454 + MLT1E1 LTR MaLR 1 654 0 569 311 47 5 chr3 79096204 79096394 -148428184 - MIR SINE MIR -34 228 31 2226 100 0 29 chr3 79096484 79096793 -148427785 + AluSx SINE Alu 1 300 -12 1308 145 5 5 chr3 79096826 79097026 -148427552 + AluJb SINE Alu 85 284 -28 348 64 0 0 chr3 79097026 79097073 -148427505 + (CATA)n Simple_repeat Simple_repeat 2 48 0 485 285 15 0 chr3 79097599 79097729 -148426849 - MER94 DNA DNA -2 132 1 219 290 0 0 chr3 79097763 79097832 -148426746 - MIR SINE MIR -55 207 139 396 311 82 0 chr3 79097846 79097981 -148426597 - L2 LINE L2 -1 3312 3167 1547 138 0 0 chr3 79100907 79101125 -148423453 - AluSg/x SINE Alu -17 295 78 1414 222 33 28 chr3 79101150 79101511 -148423067 + MLT1A1 LTR MaLR 3 365 0 258 195 39 26 chr3 79101523 79101600 -148422978 + MER112 DNA MER1_type 2 79 -181 250 225 62 0 chr3 79101616 79101696 -148422882 - MLT1I LTR MaLR -16 393 309 369 243 149 0 chr3 79102134 79102282 -148422296 + MER112 DNA MER1_type 90 259 -1 1054 147 98 9 chr3 79102405 79102629 -148421949 - MSTA LTR MaLR 0 428 185 914 98 0 166 chr3 79102647 79102852 -148421726 - L1PA8A LINE L1 -4 6127 5957 1224 108 26 5 chr3 79102852 79103047 -148421531 - MSTA LTR MaLR -229 199 1 299 251 181 36 chr3 79103053 79103222 -148421356 + MIR SINE MIR 9 190 -58 819 254 98 10 chr3 79103223 79103428 -148421150 - MIR SINE MIR -34 228 6 399 302 41 6 chr3 79104485 79104657 -148419921 - L1ME1 LINE L1 -9 6157 5980 1621 145 7 4 chr3 79104666 79104935 -148419643 + THE1B LTR MaLR 95 364 0 347 158 0 49 chr3 79104951 79105033 -148419545 - L1ME1 LINE L1 -198 5968 5891 3571 194 37 14 chr3 79105040 79105872 -148418706 - L1MB8 LINE L1 -2 6176 5326 1597 33 0 0 chr3 79105974 79106188 -148418390 - L1P LINE L1 -2727 3419 3206 2232 51 0 0 chr3 79106188 79106484 -148418094 + L1P LINE L1 2788 3083 -3063 936 191 93 4 chr3 79106484 79106720 -148417858 - MSTA LTR MaLR -170 258 2 700 295 77 42 chr3 79106726 79107300 -148417278 + L2 LINE L2 2727 3313 0 1253 167 87 37 chr3 79108717 79109040 -148415538 - MER44D DNA MER2_type 0 609 1 209 250 0 92 chr3 79109056 79109132 -148415446 - MIR SINE MIR -91 171 103 1979 149 21 24 chr3 79109509 79109885 -148414693 - THE1C LTR MaLR 0 375 1 308 298 71 12 chr3 79110246 79110501 -148414077 - L1M4 LINE L1 -2876 3270 3001 * 6439 35 0 0 chr3 79110498 79111296 -148413282 - L1PA3 LINE L1 0 6155 5358 254 250 24 0 chr3 79111339 79111423 -148413155 - MLT1I LTR MaLR 0 409 324 301 207 0 0 chr3 79111423 79111481 -148413097 - MER5A DNA MER1_type -129 60 3 903 160 27 0 chr3 79112157 79112307 -148412271 + AluJb SINE Alu 152 305 -7 397 232 35 70 chr3 79112442 79112584 -148411994 - MER97a DNA MER1_type? -742 152 16 1161 249 148 38 chr3 79114089 79114616 -148409962 - MLT1G1 LTR MaLR -10 585 1 264 322 77 9 chr3 79115366 79115475 -148409103 + MIR SINE MIR 14 125 -83 218 333 49 0 chr3 79116320 79116422 -148408156 - MIR SINE MIR -32 230 124 1288 174 41 11 chr3 79116425 79116695 -148407883 - L1MC2 LINE L1 -162 6182 5905 1820 147 16 10 chr3 79116696 79117002 -148407576 - MLT2D LTR ERVL -106 308 1 2623 157 119 5 chr3 79117002 79117641 -148406937 - L1MC2 LINE L1 -468 5876 5169 2032 97 8 0 chr3 79117651 79117948 -148406630 + AluSx SINE Alu 24 322 0 529 258 91 36 chr3 79118506 79118758 -148405820 - MLT1I LTR MaLR -143 266 1 10800 31 0 1 chr3 79119095 79121167 -148403411 + L1PA3 LINE L1 4104 6174 0 1413 231 59 77 chr3 79121334 79121957 -148402621 - LTR9 LTR ERV1 0 612 1 296 372 78 9 chr3 79122731 79122949 -148401629 - MIR SINE MIR 0 262 30 322 293 31 52 chr3 79123069 79123260 -148401318 + MER5A DNA MER1_type 2 188 -1 665 264 32 41 chr3 79123325 79123545 -148401033 - MIR SINE MIR -44 218 1 22 0 0 0 chr3 79123755 79123777 -148400801 + AT_rich Low_complexity Low_complexity 1 22 0 426 320 60 0 chr3 79124185 79124385 -148400193 - LTR33A LTR ERVL -58 465 254 578 325 57 0 chr3 79124491 79124700 -148399878 - LTR33A LTR ERVL -248 275 55 24 0 0 0 chr3 79125137 79125161 -148399417 + AT_rich Low_complexity Low_complexity 1 24 0 361 370 23 51 chr3 79125631 79125888 -148398690 + L2 LINE L2 2507 2756 -558 529 333 91 4 chr3 79126114 79126378 -148398200 + MLT1I LTR MaLR 6 292 -117 2017 119 6 10 chr3 79126391 79126703 -148397875 - THE1B LTR MaLR 0 364 54 1079 136 177 153 chr3 79126957 79127214 -148397364 - MSTA LTR MaLR 0 428 156 7811 93 9 3 chr3 79127214 79129129 -148395449 - L1PA8 LINE L1 0 6172 4243 1079 136 177 153 chr3 79129129 79129289 -148395289 - MSTA LTR MaLR -272 156 1 9351 130 30 24 chr3 79129291 79130857 -148393721 - THE1C-int LTR MaLR -2 1578 3 1588 149 49 87 chr3 79130859 79131096 -148393482 - THE1C LTR MaLR 0 375 157 2220 94 3 16 chr3 79131096 79131403 -148393175 + AluY SINE Alu 1 303 -8 1588 149 49 87 chr3 79131403 79131555 -148393023 - THE1C LTR MaLR -218 157 1 362 301 78 9 chr3 79135695 79135914 -148388664 + LTR33 LTR ERVL 235 468 -53 23 0 0 0 chr3 79136864 79136887 -148387691 + AT_rich Low_complexity Low_complexity 1 23 0 3442 124 21 0 chr3 79136931 79137465 -148387113 + L1PA13 LINE L1 5614 6158 -5 389 294 74 26 chr3 79137950 79138269 -148386309 + LTR16B LTR ERVL 44 451 -13 421 218 0 0 chr3 79140031 79140118 -148384460 - MER103 DNA DNA -77 89 3 816 261 66 0 chr3 79140187 79140398 -148384180 + MIR SINE MIR 5 229 -33 242 293 86 60 chr3 79140526 79140698 -148383880 - MIR SINE MIR -63 145 17 183 42 0 0 chr3 79142443 79142467 -148382111 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 263 258 0 0 chr3 79143399 79143461 -148381117 + MIR SINE MIR 104 165 -97 257 333 20 0 chr3 79143473 79143572 -148381006 + MER5A DNA MER1_type 26 126 -63 1920 157 3 3 chr3 79143762 79144068 -148380510 + AluSx SINE Alu 6 311 -1 6836 250 31 21 chr3 79144638 79146285 -148378293 - L1PA12 LINE L1 -2333 3870 2172 2180 124 0 0 chr3 79146285 79146584 -148377994 - AluSc SINE Alu -10 299 1 6836 250 31 21 chr3 79146584 79147995 -148376583 - L1PA12 LINE L1 -4031 2172 777 633 138 26 0 chr3 79150061 79150177 -148374401 + L1MA8 LINE L1 6166 6284 -7 1476 254 88 20 chr3 79150398 79151043 -148373535 - L1ME1 LINE L1 -58 6108 5366 225 65 0 0 chr3 79151075 79151106 -148373472 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 209 347 74 41 chr3 79151641 79151762 -148372816 + L2 LINE L2 3148 3272 0 1198 149 0 0 chr3 79152647 79152821 -148371757 - AluJb SINE Alu -8 304 131 385 310 9 0 chr3 79153255 79153371 -148371207 + MIR SINE MIR 141 257 -5 1645 121 0 8 chr3 79153661 79153910 -148370668 + AluSc SINE Alu 63 309 0 431 269 58 19 chr3 79154013 79154169 -148370409 - LTR16A LTR ERVL -12 438 277 1486 279 100 9 chr3 79154579 79155038 -148369540 - LTR33 LTR ERVL -10 511 11 312 203 0 47 chr3 79155679 79155743 -148368835 + L2 LINE L2 3209 3269 -3 472 281 96 33 chr3 79155748 79156018 -148368560 - MER102b DNA MER1_type -44 297 11 527 165 39 19 chr3 79157460 79157563 -148367015 - FLAM_A SINE Alu -8 134 30 21 0 0 0 chr3 79157742 79157763 -148366815 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 79157796 79157824 -148366754 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 79158001 79158024 -148366554 + AT_rich Low_complexity Low_complexity 1 23 0 1863 149 197 3 chr3 79158563 79158913 -148365665 + MER47B DNA MER2_type 1 418 0 1916 191 3 0 chr3 79158925 79159270 -148365308 - MER7A DNA MER2_type 0 346 3 302 307 36 44 chr3 79160419 79160556 -148364022 + LTR33A LTR ERVL 73 208 -315 24 0 0 0 chr3 79160663 79160687 -148363891 + AT_rich Low_complexity Low_complexity 1 24 0 238 227 30 30 chr3 79160707 79160773 -148363805 + LTR33 LTR ERVL 456 521 0 1608 201 77 46 chr3 79161264 79161653 -148362925 + L1MDa LINE L1 16 416 -6124 588 237 104 6 chr3 79161695 79161868 -148362710 + L1MDa LINE L1 867 1056 -5484 898 125 0 0 chr3 79161868 79162023 -148362555 - AluSc SINE Alu 0 323 169 1290 179 141 8 chr3 79162023 79162392 -148362186 + L1MDa LINE L1 1044 1461 -5079 183 42 0 0 chr3 79162392 79162416 -148362162 + (TC)n Simple_repeat Simple_repeat 2 25 0 22 103 0 0 chr3 79162426 79162504 -148362074 + AT_rich Low_complexity Low_complexity 1 78 0 208 75 25 25 chr3 79162523 79162563 -148362015 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 4493 187 66 21 chr3 79162640 79163790 -148360788 + L1MDa LINE L1 1512 2707 -3833 4183 193 41 8 chr3 79163791 79164973 -148359605 + L1MB7 LINE L1 4969 6182 -2 1633 247 59 5 chr3 79164981 79165522 -148359056 + L1MDa LINE L1 2698 3275 -3265 359 270 88 0 chr3 79165534 79165693 -148358885 + L1MDa LINE L1 3419 3591 -2949 1718 275 60 24 chr3 79265727 79266546 -148258032 + L1MEc LINE L1 1676 2523 -3873 523 187 194 42 chr3 79266571 79266682 -148257896 + L1MEc LINE L1 2991 3084 -3131 1732 140 19 68 chr3 79266682 79267003 -148257575 + AluJb SINE Alu 1 305 -7 523 187 194 42 chr3 79267003 79267175 -148257403 + L1MEc LINE L1 3084 3317 -2898 1321 262 161 19 chr3 79267184 79267903 -148256675 - L2 LINE L2 0 3313 2478 1304 176 107 13 chr3 79267905 79268208 -148256370 + MSTB LTR MaLR 3 432 0 2316 104 3 0 chr3 79272053 79272352 -148252226 + AluSq SINE Alu 1 300 -13 195 276 81 35 chr3 79273278 79273365 -148251213 + MIR3 SINE MIR 110 200 -8 1435 164 72 0 chr3 79273753 79274003 -148250575 + AluSx SINE Alu 40 307 -5 204 216 39 20 chr3 79274005 79274056 -148250522 + GA-rich Low_complexity Low_complexity 4 55 0 1738 147 103 12 chr3 79274070 79274389 -148250189 - MER7A DNA MER2_type 0 346 1 2001 110 55 0 chr3 79276871 79277162 -148247416 + AluSx SINE Alu 1 307 -5 221 0 0 33 chr3 79278928 79278958 -148245620 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 522 266 40 71 chr3 79279020 79279246 -148245332 + MIR SINE MIR 18 236 -26 885 233 30 0 chr3 79280019 79280221 -148244357 + MER3 DNA MER1_type 1 208 -1 221 322 48 20 chr3 79282211 79282357 -148242221 + MIR SINE MIR 24 173 -89 193 349 0 45 chr3 79282409 79282475 -148242103 + L2 LINE L2 3229 3291 -22 478 147 105 0 chr3 79283047 79283142 -148241436 - MER53 DNA DNA -83 106 2 25 0 0 0 chr3 79283868 79283893 -148240685 + AT_rich Low_complexity Low_complexity 1 25 0 414 0 0 0 chr3 79284840 79284886 -148239692 + (TAGA)n Simple_repeat Simple_repeat 1 46 0 961 198 35 0 chr3 79286285 79286487 -148238091 - MER20 DNA MER1_type -5 214 6 1957 185 166 0 chr3 79287088 79287521 -148237057 + MLT1D LTR MaLR 1 505 0 239 301 0 12 chr3 79287893 79287976 -148236602 - MLT1F LTR MaLR -457 85 4 775 282 20 44 chr3 79288432 79288684 -148235894 + MIR SINE MIR 17 262 0 1046 283 30 8 chr3 79289012 79289373 -148235205 - MLT1I LTR MaLR -33 376 8 600 180 174 17 chr3 79289553 79289725 -148234853 + MER20 DNA MER1_type 1 199 -20 371 264 41 59 chr3 79290940 79290985 -148233593 + L1MC4 LINE L1 7795 7839 -203 2809 13 0 0 chr3 79290985 79291291 -148233287 + AluYb8 SINE Alu 1 306 -12 371 264 41 59 chr3 79291291 79291465 -148233113 + L1MC4 LINE L1 7839 8010 -32 1829 175 0 0 chr3 79291606 79291903 -148232675 - AluJo SINE Alu -15 297 1 1507 173 8 72 chr3 79291936 79292218 -148232360 - MER46B DNA MER2_type -2495 236 105 1331 55 12 0 chr3 79292218 79292383 -148232195 - L1PA7 LINE L1 -2 6152 5986 1507 173 8 72 chr3 79292383 79292459 -148232119 - MER46B DNA MER2_type -2626 105 26 2091 103 0 81 chr3 79292635 79292955 -148231623 - AluSg SINE Alu -15 295 2 700 205 43 6 chr3 79293145 79293306 -148231272 + MLT1A2 LTR MaLR 1 167 -207 3660 151 39 76 chr3 79293524 79294422 -148230156 + L1MA9 LINE L1 5448 6312 0 220 250 0 0 chr3 79294470 79294510 -148230068 + polypyrimidine Low_complexity Low_complexity 4 43 0 539 223 2 23 chr3 79294510 79294758 -148229820 + MLT1B LTR MaLR 174 378 0 195 42 0 0 chr3 79294818 79294842 -148229736 + (T)n Simple_repeat Simple_repeat 1 24 0 867 241 0 5 chr3 79295154 79295345 -148229233 + L1PB4 LINE L1 5959 6148 -8 239 211 39 0 chr3 79295829 79295881 -148228697 + MER58 DNA MER1_type 2367 2420 0 527 286 64 6 chr3 79295938 79296109 -148228469 - MLT1J2 LTR MaLR -269 181 1 1083 164 31 0 chr3 79296366 79296561 -148228017 + MER20 DNA MER1_type 1 201 -18 285 235 66 8 chr3 79297162 79297286 -148227292 + MIR SINE MIR 10 144 -64 401 335 45 22 chr3 79297770 79297949 -148226629 + MIR SINE MIR 5 187 -75 1996 129 41 14 chr3 79298898 79299193 -148225385 + AluSx SINE Alu 1 303 -9 24 32 0 0 chr3 79299385 79299416 -148225162 + AT_rich Low_complexity Low_complexity 1 31 0 217 276 216 15 chr3 79299823 79299957 -148224621 + MIR3 SINE MIR 35 195 -13 352 247 32 21 chr3 79299961 79300054 -148224524 - L2 LINE L2 -2 3311 3218 372 22 0 0 chr3 79300182 79300227 -148224351 + (TG)n Simple_repeat Simple_repeat 2 46 0 2376 92 0 0 chr3 79300322 79300615 -148223963 + AluSx SINE Alu 1 293 -19 195 391 0 17 chr3 79301084 79301199 -148223379 - MIR SINE MIR 0 262 150 601 311 66 22 chr3 79301370 79301643 -148222935 + LTR16A LTR ERVL 22 306 -144 2190 115 3 3 chr3 79301688 79301992 -148222586 - AluSx SINE Alu -8 304 1 773 249 46 9 chr3 79302263 79302480 -148222098 - MIR SINE MIR -31 231 7 1763 205 0 0 chr3 79302480 79302787 -148221791 + AluJo SINE Alu 1 307 -5 2008 162 14 3 chr3 79302886 79303245 -148221333 - MER47A DNA MER2_type -3 363 1 2556 123 41 5 chr3 79303283 79303696 -148220882 - MSTA LTR MaLR 0 428 1 194 298 29 10 chr3 79304366 79304470 -148220108 + L2 LINE L2 2701 2806 -508 2192 161 53 24 chr3 79304501 79304917 -148219661 + MSTA LTR MaLR 1 428 0 379 299 0 26 chr3 79304919 79305036 -148219542 - MER81 DNA DNA 0 114 1 318 242 144 26 chr3 79305260 79305413 -148219165 - MIR SINE MIR 0 262 92 766 62 0 0 chr3 79305413 79305509 -148219069 + AluSc SINE Alu 1 96 -213 2279 74 0 13 chr3 79305511 79305810 -148218768 + AluY SINE Alu 2 296 -15 2367 86 3 7 chr3 79305959 79306261 -148218317 - AluSx SINE Alu -11 301 1 463 301 14 21 chr3 79306609 79306752 -148217826 - MIR SINE MIR -72 190 49 317 266 86 36 chr3 79306953 79307092 -148217486 - MIR SINE MIR 0 262 117 21 0 0 0 chr3 79308446 79308467 -148216111 + AT_rich Low_complexity Low_complexity 1 21 0 2379 63 0 7 chr3 79309241 79309540 -148215038 + AluY SINE Alu 1 297 -14 207 0 0 0 chr3 79309676 79309699 -148214879 + (ATG)n Simple_repeat Simple_repeat 2 24 0 453 321 51 5 chr3 79309704 79309919 -148214659 - MIR SINE MIR -24 238 14 374 227 169 17 chr3 79310062 79310234 -148214344 + MER102b DNA MER1_type 144 341 0 222 296 0 49 chr3 79310709 79310790 -148213788 + MIR3 SINE MIR 125 201 -7 2256 111 3 3 chr3 79311884 79312190 -148212388 + AluSx SINE Alu 7 312 0 321 372 35 0 chr3 79312234 79312347 -148212231 + L2 LINE L2 3139 3255 -17 290 353 136 14 chr3 79314793 79315014 -148209564 - L2 LINE L2 -413 2901 2654 380 284 14 21 chr3 79315648 79315789 -148208789 - LTR33 LTR ERVL 0 521 382 341 326 117 28 chr3 79317058 79317349 -148207229 + L1MC4a LINE L1 5664 5980 -1828 487 237 26 97 chr3 79317922 79318150 -148206428 + L1MC4a LINE L1 6453 6607 -1201 2714 229 207 14 chr3 79318154 79319262 -148205316 + L1MC4 LINE L1 6586 7906 -136 202 266 25 76 chr3 79321609 79321688 -148202890 - L2 LINE L2 -7 3306 3232 1224 126 102 10 chr3 79321748 79321954 -148202624 - MER30 DNA MER1_type -2 228 4 328 274 83 39 chr3 79322000 79322230 -148202348 - L2 LINE L2 -211 3061 2822 283 123 38 123 chr3 79322257 79322363 -148202215 - MER53 DNA DNA 0 189 93 2279 69 7 10 chr3 79322390 79322693 -148201885 - L1PA7 LINE L1 0 6154 5853 315 0 0 0 chr3 79323071 79323106 -148201472 + (CA)n Simple_repeat Simple_repeat 1 35 0 944 169 76 0 chr3 79323570 79323742 -148200836 + MER5A DNA MER1_type 1 185 -4 279 229 57 33 chr3 79324539 79324650 -148199928 - MLT1I LTR MaLR -59 387 266 430 265 71 41 chr3 79325208 79325378 -148199200 - MLT2E LTR ERVL -420 208 34 339 216 62 0 chr3 79326379 79326476 -148198102 + MER117 DNA MER1_type 18 120 -77 506 229 48 0 chr3 79327697 79327802 -148196776 + FLAM_A SINE Alu 1 110 -32 204 347 40 0 chr3 79328029 79328104 -148196474 + MIR SINE MIR 64 141 -67 1731 198 40 8 chr3 79328796 79329150 -148195428 + MLT1A1 LTR MaLR 1 365 0 1550 144 0 4 chr3 79330898 79331161 -148193417 + L1MB2 LINE L1 5377 5638 -545 2287 137 29 10 chr3 79331163 79331572 -148193006 + L1MB2 LINE L1 5748 6164 -7 1037 251 125 22 chr3 79331604 79332214 -148192364 - L2 LINE L2 0 3313 2451 863 202 10 24 chr3 79332215 79332423 -148192155 + MER20 DNA MER1_type 15 219 0 274 243 14 0 chr3 79332525 79332595 -148191983 - L2 LINE L2 -16 3297 3227 21 0 0 0 chr3 79332681 79332702 -148191876 + AT_rich Low_complexity Low_complexity 1 21 0 259 152 15 15 chr3 79332962 79333028 -148191550 + (TA)n Simple_repeat Simple_repeat 2 67 0 322 233 12 23 chr3 79334010 79334096 -148190482 - L2 LINE L2 -2 3311 3227 193 29 59 0 chr3 79334288 79334322 -148190256 + (TTG)n Simple_repeat Simple_repeat 1 36 0 2589 148 22 18 chr3 79334670 79335177 -148189401 - L1MA8 LINE L1 -12 6279 5771 2978 114 9 0 chr3 79335193 79335631 -148188947 - L1PB1 LINE L1 -1 6150 5709 6139 152 34 9 chr3 79335631 79337268 -148187310 - L1MA8 LINE L1 -505 5786 4104 207 0 0 0 chr3 79337724 79337747 -148186831 + (TG)n Simple_repeat Simple_repeat 2 24 0 298 161 17 28 chr3 79337851 79338031 -148186547 + (TA)n Simple_repeat Simple_repeat 2 179 0 22 56 0 0 chr3 79338637 79338673 -148185905 + AT_rich Low_complexity Low_complexity 1 36 0 204 243 0 57 chr3 79338676 79338746 -148185832 + L2 LINE L2 3140 3205 -67 1339 198 102 18 chr3 79338808 79339230 -148185348 - MER39 LTR ERV1 -80 627 6 235 324 15 0 chr3 79339233 79339301 -148185277 + L2 LINE L2 3200 3268 -4 422 169 133 0 chr3 79341544 79341627 -148182951 - FRAM SINE Alu -80 96 3 388 289 260 4 chr3 79341636 79341882 -148182696 - L2 LINE L2 -178 3135 2827 1282 194 31 3 chr3 79341891 79342184 -148182394 - MER33 DNA MER1_type -6 318 18 2872 111 26 0 chr3 79342262 79342685 -148181893 + MER57B LTR ERV1 1 434 0 2285 100 0 3 chr3 79342790 79343090 -148181488 + AluSg SINE Alu 1 299 -11 536 285 171 5 chr3 79343369 79343562 -148181016 + MIR SINE MIR 35 259 -3 493 269 66 11 chr3 79343927 79344109 -148180469 + LTR16C LTR ERVL 300 491 0 758 259 74 0 chr3 79344560 79344776 -148179802 - MIR SINE MIR 0 262 31 1156 164 0 43 chr3 79344918 79345150 -148179428 + L1MB8 LINE L1 5952 6173 -5 31 0 0 0 chr3 79345603 79345634 -148178944 + AT_rich Low_complexity Low_complexity 1 31 0 432 295 74 0 chr3 79347121 79347243 -148177335 - MIR SINE MIR -102 160 30 181 265 20 0 chr3 79348895 79348944 -148175634 + L2 LINE L2 3263 3312 -1 319 355 45 7 chr3 79349057 79349212 -148175366 + MIR SINE MIR 3 163 -99 744 145 41 7 chr3 79350407 79350552 -148174026 - L1MB7 LINE L1 0 6184 6035 3840 244 34 4 chr3 79350560 79351708 -148172870 - L1M4 LINE L1 -1450 5194 4013 6329 144 12 5 chr3 79351724 79353144 -148171434 - L1MA2 LINE L1 0 7723 6296 * 15421 161 78 37 chr3 79353141 79356394 -148168184 - L1MA2 LINE L1 -3493 4072 953 2131 130 0 10 chr3 79356394 79356701 -148167877 - AluSx SINE Alu -8 304 1 15421 161 78 37 chr3 79356701 79357613 -148166965 - L1MA2 LINE L1 -6612 953 44 1833 144 146 39 chr3 79357613 79357996 -148166582 + MSTA LTR MaLR 5 428 0 15421 161 78 37 chr3 79357996 79358028 -148166550 - L1MA2 LINE L1 -7521 44 15 2265 216 24 66 chr3 79358027 79358112 -148166466 - L1M4 LINE L1 -2622 4022 3935 * 2520 60 0 0 chr3 79358112 79358412 -148166166 - AluY SINE Alu -11 300 1 2265 216 24 66 chr3 79358412 79358721 -148165857 - L1M4 LINE L1 -2709 3935 3615 585 101 10 20 chr3 79358721 79358816 -148165762 + L1PA13 LINE L1 6062 6159 -4 2041 118 47 10 chr3 79358823 79359119 -148165459 + AluSq SINE Alu 1 307 -6 2265 216 24 66 chr3 79359119 79359708 -148164870 - L1M4 LINE L1 -3035 3609 2813 21 0 0 0 chr3 79359723 79359744 -148164834 + AT_rich Low_complexity Low_complexity 1 21 0 18670 36 0 9 chr3 79359744 79362828 -148161750 - L1PA4 LINE L1 -3 6152 3085 7743 66 5 0 chr3 79362828 79363874 -148160704 - L1PA4 LINE L1 -4601 1545 495 1066 97 13 0 chr3 79363854 79364009 -148160569 - L1PA4 LINE L1 -5983 163 7 * 5478 239 54 51 chr3 79364071 79364550 -148160028 - L1M4 LINE L1 -3928 2718 2242 1582 162 89 0 chr3 79364550 79364809 -148159769 - AluSg SINE Alu -28 282 1 5478 239 54 51 chr3 79364809 79365064 -148159514 - L1M4 LINE L1 -4404 2242 1989 2153 142 7 0 chr3 79365064 79365373 -148159205 - AluSx SINE Alu -1 311 1 5478 239 54 51 chr3 79365373 79365506 -148159072 - L1M4 LINE L1 -4657 1989 1858 2401 90 0 0 chr3 79365506 79365806 -148158772 - AluY SINE Alu -11 300 1 5478 239 54 51 chr3 79365806 79366399 -148158179 - L1M4 LINE L1 -4788 1858 1268 2306 80 10 13 chr3 79366399 79366711 -148157867 - AluY SINE Alu 0 311 1 5478 239 54 51 chr3 79366711 79367938 -148156640 - L1M4 LINE L1 -5378 1268 23 530 253 90 84 chr3 79369488 79369820 -148154758 - L1MEd LINE L1 -5236 883 550 1924 144 3 6 chr3 79369962 79370303 -148154275 - L1MA4 LINE L1 -2 6298 5959 3062 192 29 3 chr3 79370348 79370994 -148153584 + L1MB7 LINE L1 5522 6184 0 22 56 0 0 chr3 79371114 79371150 -148153428 + AT_rich Low_complexity Low_complexity 1 36 0 345 292 72 30 chr3 79371259 79371495 -148153083 - L1ME LINE L1 -333 5788 5543 1504 152 4 8 chr3 79372889 79373126 -148151452 + AluSx SINE Alu 1 236 -76 554 279 128 78 chr3 79373128 79373520 -148151058 - L2 LINE L2 -4 3309 2887 825 123 0 74 chr3 79373520 79373683 -148150895 + L1PA6 LINE L1 6004 6154 0 554 279 128 78 chr3 79373683 79373767 -148150811 - L2 LINE L2 -426 2887 2809 234 305 17 0 chr3 79374048 79374107 -148150471 + L2 LINE L2 3211 3270 -2 182 322 52 61 chr3 79374543 79374658 -148149920 - L2 LINE L2 -5 3267 3154 214 342 38 43 chr3 79375054 79375238 -148149340 - L2 LINE L2 -251 3021 2839 491 276 8 0 chr3 79375702 79375829 -148148749 + MIR SINE MIR 134 261 -1 980 119 11 40 chr3 79375830 79376007 -148148571 + THE1B LTR MaLR 139 310 -54 311 284 194 45 chr3 79376350 79376505 -148148073 + MER5A DNA MER1_type 9 186 -3 4419 132 4 33 chr3 79376619 79377008 -148147570 - L1PA13 LINE L1 0 6163 5764 2161 126 7 0 chr3 79377008 79377301 -148147277 - AluSx SINE Alu -17 295 1 4419 132 4 33 chr3 79377301 79377583 -148146995 - L1PA13 LINE L1 -399 5764 5514 2275 135 5 27 chr3 79377583 79377953 -148146625 - THE1B LTR MaLR 0 364 3 4419 132 4 33 chr3 79377953 79378046 -148146532 - L1PA13 LINE L1 -649 5514 5420 1575 190 32 2 chr3 79378114 79378520 -148146058 + L1MB8 LINE L1 2878 3295 -2851 1758 194 8 25 chr3 79378735 79379137 -148145441 + L1MB8 LINE L1 4517 4911 -1235 952 160 0 5 chr3 79379142 79379329 -148145249 + L1MA5 LINE L1 5940 6125 -175 6540 89 18 0 chr3 79379366 79380799 -148143779 - L1PA8 LINE L1 -3 6484 5038 4262 70 20 33 chr3 79380799 79381949 -148142629 - MER11A LTR ERVK 0 1266 1 23856 111 10 7 chr3 79381949 79386941 -148137637 - L1PA8 LINE L1 -1418 5043 6 1065 144 0 0 chr3 79386957 79387138 -148137440 + L1MA5 LINE L1 6115 6295 -5 3482 185 19 68 chr3 79387249 79388601 -148135977 + L1MB8 LINE L1 4901 6178 0 713 198 116 6 chr3 79388664 79388836 -148135742 - MER3 DNA MER1_type -9 200 10 199 170 94 57 chr3 79389890 79389943 -148134635 - L2 LINE L2 -512 2802 2748 650 328 34 4 chr3 79390222 79390457 -148134121 + MIR SINE MIR 3 244 -18 2380 90 0 6 chr3 79390971 79391282 -148133296 + AluSq SINE Alu 1 309 -4 408 302 94 19 chr3 79391819 79391978 -148132600 - MIR3 SINE MIR -28 180 10 285 240 62 10 chr3 79392186 79392282 -148132296 - LTR67 LTR ERVL 0 557 457 1069 217 120 11 chr3 79392386 79392662 -148131916 - MER2 DNA MER2_type 0 345 40 596 318 42 10 chr3 79393329 79393521 -148131057 + MIR SINE MIR 18 215 -47 627 167 25 27 chr3 79394805 79394988 -148129590 + CT-rich Low_complexity Low_complexity 1 183 -361 1575 194 17 7 chr3 79394988 79395287 -148129291 - AluJb SINE Alu -8 304 3 627 167 25 27 chr3 79395287 79395351 -148129227 + CT-rich Low_complexity Low_complexity 183 544 0 299 132 19 0 chr3 79395520 79395573 -148129005 + MER5A DNA MER1_type 43 96 -93 577 313 17 17 chr3 79396262 79396495 -148128083 - MIR SINE MIR -16 246 14 291 212 0 0 chr3 79396543 79396609 -148127969 + L1MB3 LINE L1 6096 6161 -22 2576 64 3 0 chr3 79396731 79397043 -148127535 + AluSp SINE Alu 1 313 0 2680 78 8 11 chr3 79397236 79397607 -148126971 - L1PB1 LINE L1 0 6151 5782 209 109 78 16 chr3 79397610 79397674 -148126904 + (TA)n Simple_repeat Simple_repeat 1 68 0 700 71 0 103 chr3 79397674 79397800 -148126778 - L1PB1 LINE L1 -337 5814 5702 624 267 102 22 chr3 79397940 79398165 -148126413 + MIR SINE MIR 13 255 -7 349 220 30 70 chr3 79398288 79398322 -148126256 - L1MB8 LINE L1 -125 6053 6019 617 215 14 0 chr3 79398322 79398466 -148126112 - L1MA10 LINE L1 -14 6320 6175 349 220 30 70 chr3 79398466 79398531 -148126047 - L1MB8 LINE L1 -159 6019 5958 424 326 54 51 chr3 79398542 79398836 -148125742 - HsTC2 DNA Tc2 -1116 782 488 275 225 0 38 chr3 79399073 79399153 -148125425 - HsTC2 DNA Tc2 -1821 77 1 1253 166 33 15 chr3 79399216 79399487 -148125091 + L1MA7 LINE L1 6001 6276 -15 209 356 144 23 chr3 79399577 79399709 -148124869 - MIR3 SINE MIR -30 178 31 204 275 29 58 chr3 79399730 79399799 -148124779 - MER5B DNA MER1_type -100 78 12 314 241 121 92 chr3 79400038 79400179 -148124399 - L2 LINE L2 0 3313 3169 2203 106 0 3 chr3 79400937 79401239 -148123339 + AluSx SINE Alu 1 301 -11 737 215 8 98 chr3 79401397 79401643 -148122935 + MIR SINE MIR 26 249 -13 23 0 0 0 chr3 79401826 79401849 -148122729 + AT_rich Low_complexity Low_complexity 1 23 0 2691 138 19 2 chr3 79402048 79402469 -148122109 - MSTA LTR MaLR 0 428 1 3866 254 60 31 chr3 79402618 79404563 -148120015 - L1ME LINE L1 -2267 3813 1851 429 203 0 34 chr3 79404624 79405437 -148119141 + (TA)n Simple_repeat Simple_repeat 1 785 0 546 169 0 31 chr3 79405476 79405708 -148118870 + (TA)n Simple_repeat Simple_repeat 1 224 0 1754 121 4 0 chr3 79405708 79405947 -148118631 - AluSq SINE Alu -57 256 17 367 143 0 0 chr3 79405950 79406020 -148118558 + AluS SINE Alu 230 299 -1 1597 234 90 78 chr3 79406128 79406168 -148118410 - L1ME LINE L1 -4588 1492 1454 2508 65 0 0 chr3 79406168 79406474 -148118104 - AluY SINE Alu -5 306 1 1597 234 90 78 chr3 79406474 79406519 -148118059 - L1ME LINE L1 -4626 1454 1411 1424 199 10 67 chr3 79406519 79406831 -148117747 - AluJo SINE Alu -18 294 1 1597 234 90 78 chr3 79406831 79407354 -148117224 - L1ME LINE L1 -4669 1411 896 2126 156 89 3 chr3 79407354 79407746 -148116832 + MSTB LTR MaLR 1 426 0 1597 234 90 78 chr3 79407746 79407770 -148116808 - L1ME LINE L1 -5184 896 874 1511 153 62 28 chr3 79407770 79408058 -148116520 - AluJb SINE Alu -14 298 1 1597 234 90 78 chr3 79408058 79408498 -148116080 - L1ME LINE L1 -5206 874 386 1893 78 44 0 chr3 79408498 79408768 -148115810 - L1PA13 LINE L1 0 6163 5882 1597 234 90 78 chr3 79408768 79409077 -148115501 - L1ME LINE L1 -5694 386 82 379 222 81 30 chr3 79409537 79409636 -148114942 + MIR SINE MIR 53 156 -106 2086 181 55 78 chr3 79409731 79410296 -148114282 - MLT2B3 LTR ERVL -2 552 1 1982 121 0 35 chr3 79410473 79410762 -148113816 + AluSg SINE Alu 1 279 -31 26 50 0 0 chr3 79411066 79411106 -148113472 + AT_rich Low_complexity Low_complexity 1 40 0 216 0 0 0 chr3 79411862 79411886 -148112692 + (T)n Simple_repeat Simple_repeat 1 24 0 251 328 53 6 chr3 79411906 79412077 -148112501 - L1ME LINE L1 -267 5854 5676 2854 195 50 44 chr3 79413185 79413972 -148110606 + L1MB8 LINE L1 4383 5177 -969 1582 201 14 21 chr3 79413972 79414261 -148110317 + AluJo SINE Alu 1 287 -25 2854 195 50 44 chr3 79414261 79414360 -148110218 + L1MB8 LINE L1 5177 5274 -872 294 178 68 8 chr3 79414414 79414532 -148110046 + (TA)n Simple_repeat Simple_repeat 1 125 0 3500 160 56 44 chr3 79414536 79415337 -148109241 + L1MB8 LINE L1 5306 6116 -62 252 313 0 24 chr3 79415342 79415425 -148109153 - MLT1K LTR MaLR -324 264 184 393 320 39 7 chr3 79416509 79416662 -148107916 + MIR SINE MIR 8 165 -97 2319 82 3 0 chr3 79416681 79416972 -148107606 + AluY SINE Alu 4 295 -16 1067 175 50 0 chr3 79416976 79417176 -148107402 + MER20 DNA MER1_type 10 219 0 186 341 0 0 chr3 79417182 79417226 -148107352 + L2 LINE L2 3210 3253 -19 243 0 0 0 chr3 79417742 79417769 -148106809 + (A)n Simple_repeat Simple_repeat 1 27 0 2314 101 0 0 chr3 79419443 79419739 -148104839 - AluSp SINE Alu -17 296 1 272 295 135 51 chr3 79420247 79420403 -148104175 - MIR SINE MIR -74 188 20 201 267 53 40 chr3 79422177 79422252 -148102326 + MIR SINE MIR 186 261 -1 570 262 14 48 chr3 79423465 79423675 -148100903 - L1ME3A LINE L1 -28 6142 5940 229 113 0 57 chr3 79423898 79423951 -148100627 + (TCC)n Simple_repeat Simple_repeat 3 52 0 1663 165 55 7 chr3 79424213 79424486 -148100092 + AluJo SINE Alu 10 295 -17 27 0 0 0 chr3 79424877 79424904 -148099674 + AT_rich Low_complexity Low_complexity 1 27 0 246 280 65 19 chr3 79425579 79425686 -148098892 + MIR SINE MIR 49 160 -102 2027 128 0 0 chr3 79425688 79425995 -148098583 - AluSg SINE Alu 0 307 1 3729 175 71 48 chr3 79426083 79426924 -148097654 + MER21B LTR ERV1 1 861 -2 2519 63 0 0 chr3 79426993 79427294 -148097284 - AluY SINE Alu -10 301 1 2129 132 0 16 chr3 79427296 79427600 -148096978 - AluSq SINE Alu -14 299 1 259 359 0 0 chr3 79427942 79428020 -148096558 + L3 LINE CR1 1499 1576 -1 313 256 13 13 chr3 79428023 79428101 -148096477 - L2 LINE L2 -5 3308 3231 389 309 211 38 chr3 79428300 79428721 -148095857 - L2 LINE L2 -371 2943 2450 282 302 47 19 chr3 79428780 79428886 -148095692 - L2 LINE L2 -10 3303 3195 1065 227 19 0 chr3 79428902 79429118 -148095460 + MER58A DNA MER1_type 1 220 -4 242 289 91 25 chr3 79429173 79429294 -148095284 + MIR SINE MIR 90 218 -44 2380 82 0 0 chr3 79429312 79429606 -148094972 + AluY SINE Alu 1 294 -17 504 0 0 0 chr3 79430396 79430452 -148094126 + (TA)n Simple_repeat Simple_repeat 2 57 0 618 226 128 0 chr3 79430472 79430636 -148093942 + Charlie8 DNA MER1_type 81 265 -2152 25 31 0 0 chr3 79430752 79430784 -148093794 + AT_rich Low_complexity Low_complexity 1 32 0 183 359 19 0 chr3 79430801 79430854 -148093724 + MIR SINE MIR 7 60 -202 422 159 11 0 chr3 79430872 79430960 -148093618 - MER53 DNA DNA 0 189 101 453 194 176 0 chr3 79430988 79431096 -148093482 + MIR SINE MIR 67 193 -69 350 259 36 22 chr3 79431378 79431517 -148093061 - MLT1J LTR MaLR -266 245 105 2261 104 0 22 chr3 79433307 79433625 -148090953 - AluY SINE Alu 0 311 1 217 306 148 9 chr3 79434129 79434237 -148090341 - MIR SINE MIR -121 141 19 2353 106 0 0 chr3 79434251 79434563 -148090015 - AluSx SINE Alu 0 312 1 344 297 110 21 chr3 79434750 79435077 -148089501 + L1MC4a LINE L1 5556 5911 -1897 337 328 17 17 chr3 79435220 79435336 -148089242 - MIR SINE MIR -132 130 15 1586 162 86 151 chr3 79435795 79436304 -148088274 + MLT2B1 LTR ERVL 1 541 21 1846 152 3 24 chr3 79436304 79436601 -148087977 + AluJo SINE Alu 1 291 -21 351 0 0 0 chr3 79436602 79436641 -148087937 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 1586 162 86 151 chr3 79436641 79436685 -148087893 + MLT2B1 LTR ERVL 475 520 0 246 273 13 26 chr3 79436843 79436920 -148087658 - MLT1L LTR MaLR -338 277 202 618 253 194 30 chr3 79437387 79437715 -148086863 - LTR50 LTR ERVL -59 686 330 725 184 199 15 chr3 79437763 79437959 -148086619 - LTR50 LTR ERVL -540 255 24 323 336 32 0 chr3 79437994 79438119 -148086459 + MIR SINE MIR 126 254 -8 2491 63 0 25 chr3 79438297 79438612 -148085966 - AluY SINE Alu -4 307 1 266 244 37 0 chr3 79438684 79438766 -148085812 - L1MC2 LINE L1 -1 6343 6259 1414 124 78 47 chr3 79438808 79439065 -148085513 - L1PA16 LINE L1 -9 6157 5893 1867 181 26 18 chr3 79439188 79439224 -148085354 + L1ME LINE L1 5233 5267 -899 7363 117 90 7 chr3 79439224 79440360 -148084218 - Tigger3b DNA MER2_type 0 1231 2 1867 181 26 18 chr3 79440360 79440725 -148083853 + L1ME LINE L1 5267 5639 -527 352 246 59 23 chr3 79441092 79441227 -148083351 + MIR3 SINE MIR 31 168 -40 243 349 38 61 chr3 79441231 79441271 -148083307 + MER91A DNA MER1_type 1 40 -156 2261 114 0 0 chr3 79441271 79441569 -148083009 + AluSx SINE Alu 7 304 -8 243 349 38 61 chr3 79441569 79441660 -148082918 + MER91A DNA MER1_type 40 129 -67 21 57 0 0 chr3 79441794 79441829 -148082749 + AT_rich Low_complexity Low_complexity 1 35 0 202 160 85 21 chr3 79443282 79443376 -148081202 + (TA)n Simple_repeat Simple_repeat 1 100 0 33 25 0 0 chr3 79443473 79443513 -148081065 + AT_rich Low_complexity Low_complexity 1 40 0 1792 198 21 0 chr3 79443628 79443956 -148080622 - L1MB7 LINE L1 -204 5980 5646 523 234 109 5 chr3 79443967 79444112 -148080466 - MIR SINE MIR -62 146 1 392 277 0 50 chr3 79445028 79445169 -148079409 + MIR SINE MIR 67 200 -62 298 307 24 8 chr3 79445259 79445386 -148079192 + MER103 DNA DNA 36 164 -2 692 195 113 82 chr3 79445408 79445665 -148078913 + Charlie8 DNA MER1_type 2 266 -2151 1984 152 0 0 chr3 79445723 79446019 -148078559 + AluJb SINE Alu 1 296 -16 789 283 68 4 chr3 79447127 79447364 -148077214 + MIR SINE MIR 1 252 -10 1122 241 5 5 chr3 79447529 79447753 -148076825 - MER58A DNA MER1_type 0 224 1 225 271 71 129 chr3 79449106 79449246 -148075332 - MER5A DNA MER1_type -1 188 57 1694 202 91 0 chr3 79449628 79450024 -148074554 + Charlie4a DNA MER1_type 17 448 -60 335 302 66 0 chr3 79450084 79450207 -148074371 - MIR SINE MIR -58 150 35 306 222 101 10 chr3 79451111 79451210 -148073368 - L1ME4a LINE L1 -37 6084 5977 2127 89 7 4 chr3 79451374 79451709 -148072869 - AluSx SINE Alu 0 336 1 492 243 198 59 chr3 79452117 79452319 -148072259 - MIR SINE MIR 0 262 33 1811 257 57 50 chr3 79452338 79452903 -148071675 + MLT1G1 LTR MaLR 10 578 -17 455 233 104 36 chr3 79454037 79454230 -148070348 - LTR33 LTR ERVL -8 513 308 541 292 64 5 chr3 79454277 79454479 -148070099 - LTR33 LTR ERVL -307 214 1 614 297 130 16 chr3 79454769 79455110 -148069468 + L2 LINE L2 2690 3074 -239 1569 269 118 19 chr3 79455125 79455642 -148068936 + MLT1G1 LTR MaLR 16 583 -12 226 337 51 0 chr3 79455706 79455804 -148068774 + MLT1G1-int LTR MaLR 48 150 -1221 494 320 35 31 chr3 79455824 79456080 -148068498 + MLT1G1-int LTR MaLR 285 541 -830 2060 95 0 67 chr3 79456815 79457130 -148067448 - AluSq SINE Alu -19 294 1 429 263 70 0 chr3 79457353 79457467 -148067111 + MLT1G1 LTR MaLR 3 124 -471 1347 296 93 15 chr3 79457528 79458262 -148066316 + L1ME3 LINE L1 4487 5277 -869 1157 298 50 17 chr3 79458270 79458813 -148065765 + L1ME3 LINE L1 5399 5959 -203 807 313 56 21 chr3 79459745 79460119 -148064459 - LTR16C LTR ERVL -2 489 103 1541 270 23 15 chr3 79460241 79460715 -148063863 - MER113 DNA MER1_type? -3 518 41 243 331 152 7 chr3 79460760 79460911 -148063667 + MIR SINE MIR 84 256 -6 2177 105 17 10 chr3 79461088 79461383 -148063195 + AluSx SINE Alu 1 297 -15 654 229 7 7 chr3 79462302 79462442 -148062136 - Charlie4 DNA MER1_type -3 1958 1819 1429 166 52 31 chr3 79463041 79463330 -148061248 + AluJb SINE Alu 1 295 -17 327 265 116 14 chr3 79463951 79464098 -148060480 - MIR SINE MIR -31 231 70 505 241 58 7 chr3 79464113 79464250 -148060328 + MIR SINE MIR 23 166 -96 936 215 139 69 chr3 79464428 79464846 -148059732 - LTR16A1 LTR ERVL 0 457 11 269 264 69 58 chr3 79464864 79464890 -148059688 + MER5A DNA MER1_type 26 50 -139 3971 174 23 67 chr3 79464890 79465518 -148059060 - LTR1 LTR ERV1 0 785 200 2316 106 0 0 chr3 79465518 79465820 -148058758 - AluSc SINE Alu -7 302 1 3971 174 23 67 chr3 79465820 79466012 -148058566 - LTR1 LTR ERV1 -585 200 1 269 264 69 58 chr3 79466012 79466072 -148058506 + MER5A DNA MER1_type 50 113 -76 282 56 0 0 chr3 79466139 79466175 -148058403 + (TG)n Simple_repeat Simple_repeat 2 37 0 422 315 34 14 chr3 79466991 79467137 -148057441 + MLT1I LTR MaLR 71 219 -190 473 261 106 37 chr3 79467386 79467547 -148057031 + MIR3 SINE MIR 30 201 -7 2039 112 0 7 chr3 79468342 79468629 -148055949 + AluSg SINE Alu 1 285 -25 529 55 55 0 chr3 79468819 79468892 -148055686 + MADE1 DNA Mariner 4 80 0 1812 213 77 45 chr3 79469994 79470530 -148054048 + MLT1H1 LTR MaLR 3 592 -1 704 223 109 55 chr3 79470822 79471024 -148053554 + MER58C DNA MER1_type 3 215 0 2051 170 35 32 chr3 79471061 79471616 -148052962 + MLT2A2 LTR ERVL 1 554 0 1503 267 22 71 chr3 79471618 79472198 -148052380 - L1ME LINE L1 -5477 593 42 587 203 176 14 chr3 79472354 79472502 -148052076 + MER5A DNA MER1_type 16 187 -2 1331 280 94 29 chr3 79472594 79473209 -148051369 - L1MB8 LINE L1 -1 6177 5523 2274 116 0 0 chr3 79473336 79473637 -148050941 + AluSx SINE Alu 1 301 -11 24 53 0 0 chr3 79473689 79473727 -148050851 + AT_rich Low_complexity Low_complexity 1 38 0 193 29 29 29 chr3 79474856 79474891 -148049687 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 44970 40 1 1 chr3 79474893 79481035 -148043543 - L1PA3 LINE L1 -3 6152 5 270 311 108 0 chr3 79481458 79481532 -148043046 + MIR SINE MIR 17 98 -164 713 183 0 69 chr3 79481548 79481679 -148042899 - FRAM SINE Alu -20 156 35 327 241 8 90 chr3 79481706 79481839 -148042739 + MIR SINE MIR 129 250 -12 204 135 0 0 chr3 79481843 79481880 -148042698 + (TCC)n Simple_repeat Simple_repeat 1 37 0 1322 133 19 29 chr3 79481999 79482209 -148042369 + MER3 DNA MER1_type 1 208 -1 425 306 73 73 chr3 79482218 79482493 -148042085 - MER102a DNA MER1_type 0 330 56 475 292 111 18 chr3 79483142 79483368 -148041210 + MIR SINE MIR 2 248 -14 396 252 97 0 chr3 79483592 79483695 -148040883 - MER81 DNA DNA 0 114 2 198 0 0 0 chr3 79484424 79484446 -148040132 + (T)n Simple_repeat Simple_repeat 1 22 0 490 265 161 14 chr3 79485031 79485077 -148039501 - L2 LINE L2 -172 3141 3103 2153 96 0 14 chr3 79485077 79485399 -148039179 + AluY SINE Alu 1 311 0 490 265 161 14 chr3 79485399 79485563 -148039015 - L2 LINE L2 -210 3103 2900 408 283 58 7 chr3 79485560 79485698 -148038880 - L2 LINE L2 -518 2796 2652 * 292 283 0 0 chr3 79486170 79486230 -148038348 + Tigger3(Golem) DNA MER2_type 1 60 -2969 3145 116 17 60 chr3 79486234 79486398 -148038180 + Tigger3(Golem) DNA MER2_type 2530 2699 -329 1350 94 0 55 chr3 79486398 79486600 -148037978 - L1PA6 LINE L1 0 6154 5964 3145 116 17 60 chr3 79486600 79486952 -148037626 + Tigger3(Golem) DNA MER2_type 2699 3024 -4 2470 82 3 0 chr3 79487560 79487863 -148036715 - AluSc SINE Alu -5 304 1 1924 170 0 10 chr3 79488422 79488733 -148035845 + AluJo SINE Alu 1 308 -4 2470 80 0 3 chr3 79488735 79489037 -148035541 + AluSp SINE Alu 1 301 -12 5005 195 33 27 chr3 79489119 79489684 -148034894 + L1MD2 LINE L1 5198 5758 -601 2759 132 16 12 chr3 79489684 79490110 -148034468 + MSTA LTR MaLR 1 428 0 5005 195 33 27 chr3 79490110 79490691 -148033887 + L1MD2 LINE L1 5758 6355 -4 704 234 66 0 chr3 79491591 79491788 -148032790 + L1MD3 LINE L1 7772 7981 -14 377 244 142 86 chr3 79492208 79492405 -148032173 + MIR SINE MIR 47 254 -8 623 224 30 0 chr3 79492686 79492820 -148031758 + MIR SINE MIR 3 140 -122 299 196 206 10 chr3 79493855 79493957 -148030621 + MER5A DNA MER1_type 8 129 -60 47 44 0 0 chr3 79493987 79494055 -148030523 + AT_rich Low_complexity Low_complexity 1 68 0 390 255 0 37 chr3 79494139 79494261 -148030317 - MIR SINE MIR -45 163 52 320 250 0 0 chr3 79494980 79495052 -148029526 - MER103 DNA DNA -86 80 9 289 200 21 126 chr3 79495721 79495816 -148028762 + L2 LINE L2 3229 3313 0 2174 134 3 32 chr3 79495866 79496209 -148028369 + MER1B DNA MER1_type 7 339 0 2013 139 28 92 chr3 79496923 79497312 -148027266 - THE1B LTR MaLR 0 364 1 232 260 50 30 chr3 79497841 79497941 -148026637 - MIR3 SINE MIR -3 205 104 2201 120 20 0 chr3 79498564 79498863 -148025715 + AluSx SINE Alu 1 305 -7 893 204 0 6 chr3 79499099 79499261 -148025317 - FRAM SINE Alu -16 160 1 426 317 52 79 chr3 79499354 79499720 -148024858 - L2 LINE L2 0 3272 2917 428 292 21 14 chr3 79499769 79499913 -148024665 + MIR3 SINE MIR 14 158 -50 243 0 0 0 chr3 79500453 79500480 -148024098 + (A)n Simple_repeat Simple_repeat 1 27 0 371 318 71 6 chr3 79501201 79501456 -148023122 - L2 LINE L2 -1696 1618 1305 907 244 218 16 chr3 79501476 79501926 -148022652 - L2 LINE L2 -2755 559 19 404 155 95 0 chr3 79502227 79502311 -148022267 + L1ME1 LINE L1 5780 5871 -295 21 0 0 0 chr3 79502408 79502429 -148022149 + AT_rich Low_complexity Low_complexity 1 21 0 2020 216 55 26 chr3 79502432 79502489 -148022089 - L1ME2 LINE L1 -10 6154 6100 1639 147 36 62 chr3 79502489 79502651 -148021927 - AluJo SINE Alu -13 299 147 2519 73 0 0 chr3 79502651 79502953 -148021625 - AluY SINE Alu -9 302 1 1639 147 36 62 chr3 79502953 79503097 -148021481 - AluJo SINE Alu -165 147 1 2020 216 55 26 chr3 79503097 79503575 -148021003 - L1ME2 LINE L1 -64 6100 5600 372 273 0 0 chr3 79503922 79504098 -148020480 + (TA)n Simple_repeat Simple_repeat 2 177 0 2802 158 108 23 chr3 79504103 79504659 -148019919 + MER6A DNA MER2_type 1 603 -2 926 231 120 71 chr3 79504659 79505210 -148019368 - L2 LINE L2 -14 3299 2720 12761 105 16 43 chr3 79506076 79507203 -148017375 + L1P3 LINE L1 4 1111 -5350 2365 87 0 29 chr3 79507203 79507515 -148017063 - AluY SINE Alu -8 303 1 12761 105 16 43 chr3 79507515 79508552 -148016026 + L1P3 LINE L1 1111 2174 -4287 41524 71 4 2 chr3 79508553 79514687 -148009891 + L1PA7 LINE L1 1 6144 -10 2180 125 0 0 chr3 79516345 79516641 -148007937 + AluSx SINE Alu 1 296 -16 383 214 95 0 chr3 79516758 79516842 -148007736 - MIR3 SINE MIR -34 174 83 23 0 0 0 chr3 79517208 79517231 -148007347 + AT_rich Low_complexity Low_complexity 1 23 0 1142 156 48 11 chr3 79517291 79517477 -148007101 + AluSg/x SINE Alu 99 291 -21 1228 186 14 0 chr3 79517872 79518087 -148006491 - MER20 DNA MER1_type 0 219 2 2032 147 6 6 chr3 79518087 79518399 -148006179 + AluJo SINE Alu 1 312 0 314 167 33 0 chr3 79518431 79518491 -148006087 + L2 LINE L2 3186 3247 -66 2488 50 7 13 chr3 79519293 79519592 -148004986 - AluY SINE Alu -3 308 12 259 346 8 31 chr3 79519870 79519997 -148004581 + MIR SINE MIR 33 156 -106 1891 186 28 73 chr3 79520077 79520124 -148004454 - MLT2D LTR ERVL -8 406 358 270 0 0 0 chr3 79520124 79520154 -148004424 + (TG)n Simple_repeat Simple_repeat 2 31 0 1891 186 28 73 chr3 79520154 79520531 -148004047 - MLT2D LTR ERVL -56 358 1 2517 138 48 5 chr3 79520544 79520958 -148003620 + Tigger2a DNA MER2_type 2 433 -1 626 337 16 12 chr3 79521137 79521383 -148003195 - MIR SINE MIR 0 262 16 1087 148 10 25 chr3 79521910 79522112 -148002466 - L1PA7 LINE L1 -2 6152 5954 819 173 91 5 chr3 79522333 79522530 -148002048 + MER113 DNA MER1_type? 2 215 -306 944 252 109 41 chr3 79522989 79523270 -148001308 - MLT1H1 LTR MaLR 0 593 332 2762 145 145 35 chr3 79523270 79523821 -148000757 - LTR9 LTR ERV1 0 612 1 944 252 109 41 chr3 79523821 79524050 -148000528 - MLT1H1 LTR MaLR -261 332 2 565 289 74 5 chr3 79524051 79524241 -148000337 + MIR SINE MIR 47 249 -13 1011 171 13 86 chr3 79524747 79524981 -147999597 + MER20 DNA MER1_type 2 218 -1 503 235 141 77 chr3 79525707 79525824 -147998754 + L1ME3A LINE L1 5796 5904 -258 2307 78 0 0 chr3 79525824 79526107 -147998471 + AluY SINE Alu 29 311 0 503 235 141 77 chr3 79526107 79526144 -147998434 + L1ME3A LINE L1 5904 5937 -225 799 226 47 19 chr3 79526144 79526356 -147998222 - MER20 DNA MER1_type 0 219 2 503 235 141 77 chr3 79526356 79526527 -147998051 + L1ME3A LINE L1 5937 6141 -21 429 20 0 0 chr3 79526996 79527046 -147997532 + (CA)n Simple_repeat Simple_repeat 1 50 0 1084 109 27 16 chr3 79527758 79527942 -147996636 - L1PB2 LINE L1 0 6151 5966 2068 87 0 0 chr3 79528404 79528658 -147995920 + AluSq SINE Alu 50 303 -10 186 224 0 0 chr3 79528745 79528794 -147995784 + CT-rich Low_complexity Low_complexity 18 66 0 1945 154 10 0 chr3 79528871 79529163 -147995415 - AluSx SINE Alu -17 295 1 181 323 16 0 chr3 79530097 79530159 -147994419 + L2 LINE L2 3112 3174 -98 254 264 57 57 chr3 79531099 79531205 -147993373 - L2 LINE L2 -8 3305 3200 202 226 32 32 chr3 79531547 79531609 -147992969 - MIR SINE MIR 0 262 201 343 203 93 25 chr3 79534513 79534631 -147989947 + MIR SINE MIR 29 154 -108 384 298 50 0 chr3 79534841 79534962 -147989616 - MIR3 SINE MIR -48 160 34 2355 78 0 10 chr3 79535016 79535312 -147989266 - AluY SINE Alu -18 293 1 21 36 0 0 chr3 79535664 79535692 -147988886 + AT_rich Low_complexity Low_complexity 1 28 0 1198 173 34 0 chr3 79535781 79535989 -147988589 + MER20 DNA MER1_type 2 216 -3 1147 251 115 53 chr3 79536711 79537224 -147987354 + MLT1H LTR MaLR 1 545 -4 2373 68 0 3 chr3 79538174 79538466 -147986112 + AluY SINE Alu 1 291 -20 521 319 54 19 chr3 79538569 79538809 -147985769 + MIR SINE MIR 14 259 -3 2778 143 26 24 chr3 79539744 79540200 -147984378 - LTR32 LTR ERVL 0 471 15 208 281 16 16 chr3 79540502 79540566 -147984012 + MIR SINE MIR 128 191 -71 2359 107 0 3 chr3 79540995 79541305 -147983273 + AluSx SINE Alu 4 312 0 276 77 0 0 chr3 79542978 79543017 -147981561 + (TC)n Simple_repeat Simple_repeat 2 40 0 327 65 0 0 chr3 79543017 79543063 -147981515 + (CA)n Simple_repeat Simple_repeat 1 46 0 996 206 25 20 chr3 79544132 79544336 -147980242 + MER3 DNA MER1_type 1 205 -4 633 262 81 40 chr3 79544362 79544610 -147979968 - MLT1J LTR MaLR -147 364 107 239 125 0 54 chr3 79544616 79544672 -147979906 + (TTTTG)n Simple_repeat Simple_repeat 2 54 0 230 409 0 0 chr3 79544931 79545002 -147979576 + L2 LINE L2 3137 3207 -65 706 169 32 71 chr3 79545840 79545994 -147978584 - AluSg/x SINE Alu -12 297 150 347 373 18 18 chr3 79546203 79546372 -147978206 + MER5A DNA MER1_type 21 189 0 284 343 0 0 chr3 79546587 79546660 -147977918 - L2 LINE L2 -218 3054 2982 233 328 0 0 chr3 79546688 79546746 -147977832 - MER5A DNA MER1_type 0 189 132 218 149 21 64 chr3 79546773 79546820 -147977758 - MER5C DNA MER1_type -276 48 4 3120 71 0 3 chr3 79546867 79547232 -147977346 - THE1B LTR MaLR 0 364 1 658 293 52 9 chr3 79547819 79548031 -147976547 + MIR SINE MIR 6 226 -36 234 292 125 0 chr3 79549276 79549348 -147975230 - L2 LINE L2 -73 3199 3119 204 344 84 15 chr3 79549579 79549710 -147974868 - L2 LINE L2 -454 2860 2721 1685 163 7 10 chr3 79550330 79550619 -147973959 + AluJo SINE Alu 1 288 -24 22 0 0 0 chr3 79550619 79550641 -147973937 + AT_rich Low_complexity Low_complexity 1 22 0 2087 145 20 0 chr3 79550664 79550967 -147973611 + AluSx SINE Alu 1 309 -3 2316 112 3 0 chr3 79551529 79551834 -147972744 - AluSp SINE Alu -7 306 1 29 28 0 0 chr3 79551860 79551896 -147972682 + AT_rich Low_complexity Low_complexity 1 36 0 602 43 32 70 chr3 79551900 79552087 -147972491 + (TA)n Simple_repeat Simple_repeat 1 180 0 371 142 34 45 chr3 79552130 79552306 -147972272 + (TATAA)n Simple_repeat Simple_repeat 1 174 0 2070 148 20 0 chr3 79552381 79552684 -147971894 - AluSx SINE Alu -3 309 1 22 0 0 0 chr3 79552707 79552729 -147971849 + AT_rich Low_complexity Low_complexity 1 22 0 1553 159 4 4 chr3 79552729 79552986 -147971592 - AluJo SINE Alu -24 288 32 545 99 16 66 chr3 79552996 79553178 -147971400 + (TTATA)n Simple_repeat Simple_repeat 2 174 0 211 198 47 23 chr3 79553181 79553267 -147971311 + (TA)n Simple_repeat Simple_repeat 2 89 0 376 139 95 13 chr3 79553278 79553436 -147971142 + (TA)n Simple_repeat Simple_repeat 2 172 0 344 149 43 0 chr3 79553477 79553571 -147971007 + (TA)n Simple_repeat Simple_repeat 2 99 0 372 152 47 24 chr3 79553643 79553948 -147970630 + (TA)n Simple_repeat Simple_repeat 1 312 0 810 315 83 13 chr3 79553958 79554488 -147970090 - L1ME LINE L1 -347 5823 5257 24 32 0 0 chr3 79554508 79554539 -147970039 + AT_rich Low_complexity Low_complexity 1 31 0 398 226 26 174 chr3 79555020 79555215 -147969363 - MER5A DNA MER1_type -6 183 18 934 139 0 0 chr3 79555886 79556015 -147968563 + FLAM_C SINE Alu 1 129 -4 395 174 29 29 chr3 79556015 79556153 -147968425 + GA-rich Low_complexity Low_complexity 4 141 0 393 255 0 32 chr3 79556174 79556282 -147968296 + MIR SINE MIR 66 171 -37 25 31 0 0 chr3 79556754 79556786 -147967792 + AT_rich Low_complexity Low_complexity 1 32 0 1108 176 0 45 chr3 79559011 79559233 -147965345 - MER20 DNA MER1_type -1 218 7 216 189 19 19 chr3 79559279 79559332 -147965246 - MER5A DNA MER1_type -22 167 115 199 302 16 0 chr3 79559280 79559343 -147965235 + MER5A DNA MER1_type 35 98 -91 * 754 267 6 6 chr3 79559633 79559805 -147964773 - MER5B DNA MER1_type -5 173 2 423 290 0 29 chr3 79559816 79559954 -147964624 - MER5A DNA MER1_type -4 185 52 221 308 0 0 chr3 79559959 79560037 -147964541 + (CA)n Simple_repeat Simple_repeat 1 78 0 268 259 210 0 chr3 79561130 79561211 -147963367 + MIR SINE MIR 92 189 -73 693 243 221 21 chr3 79561211 79561491 -147963087 + L2 LINE L2 2968 3303 -10 266 299 0 0 chr3 79561494 79561561 -147963017 + MIR SINE MIR 196 262 0 225 246 18 0 chr3 79562659 79562716 -147961862 - MIR SINE MIR -4 258 201 274 302 95 12 chr3 79562925 79563094 -147961484 + L1ME LINE L1 5677 5859 -262 2342 80 0 7 chr3 79563192 79563518 -147961060 - AluY SINE Alu 0 324 1 239 277 8 67 chr3 79563519 79563638 -147960940 + HAL1b LINE L1 1222 1333 -15 1483 122 31 26 chr3 79563658 79563887 -147960691 - L1MC1 LINE L1 -5 6328 6099 231 290 43 14 chr3 79564447 79564516 -147960062 + L2 LINE L2 3200 3270 -2 312 27 0 0 chr3 79564627 79564664 -147959914 + (TG)n Simple_repeat Simple_repeat 2 38 0 1392 208 3 24 chr3 79564667 79564955 -147959623 - AluJo SINE Alu -30 282 1 645 170 0 0 chr3 79564957 79565057 -147959521 - AluJo/FLAM SINE Alu -179 133 34 333 266 220 2 chr3 79565390 79565560 -147959018 + MIR SINE MIR 3 211 -51 1921 102 25 70 chr3 79566302 79566642 -147957936 - AluSx SINE Alu 0 312 3 1224 219 14 0 chr3 79566701 79566916 -147957662 - MER58A DNA MER1_type -6 218 1 189 239 0 0 chr3 79567339 79567385 -147957193 + L2 LINE L2 3263 3308 -5 188 159 0 23 chr3 79567398 79567442 -147957136 + GA-rich Low_complexity Low_complexity 2 44 0 329 321 117 22 chr3 79567583 79567720 -147956858 - L2 LINE L2 -1 3271 3122 279 0 0 0 chr3 79567723 79567734 -147956844 + (CA)n Simple_repeat Simple_repeat 1 42 0 279 0 0 0 chr3 79567734 79567765 -147956813 + (CA)n Simple_repeat Simple_repeat 2 32 0 2356 70 3 0 chr3 79567787 79568074 -147956504 - AluY SINE Alu -23 288 1 691 293 39 10 chr3 79569060 79569268 -147955310 - MIR SINE MIR -14 248 35 802 216 49 25 chr3 79569473 79569677 -147954901 - MER3 DNA MER1_type 0 209 1 543 323 3 0 chr3 79570260 79570433 -147954145 + MIR SINE MIR 16 189 -65 2397 86 3 0 chr3 79570576 79570879 -147953699 - AluSg SINE Alu -6 304 1 180 0 0 0 chr3 79570888 79570908 -147953670 + (T)n Simple_repeat Simple_repeat 1 20 0 484 293 83 29 chr3 79571614 79571847 -147952731 - MIR SINE MIR -13 249 6 2050 132 30 48 chr3 79572030 79572401 -147952177 + THE1B LTR MaLR 1 364 0 575 288 170 0 chr3 79572502 79572655 -147951923 + MER5A DNA MER1_type 9 187 -2 22 0 0 0 chr3 79573336 79573358 -147951220 + AT_rich Low_complexity Low_complexity 1 22 0 2043 149 0 0 chr3 79573787 79574089 -147950489 + AluSx SINE Alu 1 302 -10 48 91 0 0 chr3 79574135 79574267 -147950311 + AT_rich Low_complexity Low_complexity 1 132 0 386 262 248 5 chr3 79574371 79574577 -147950001 - MIR SINE MIR -5 257 2 559 228 29 0 chr3 79575193 79575329 -147949249 + MER5A DNA MER1_type 14 153 -36 494 232 21 63 chr3 79575339 79575481 -147949097 + MIR SINE MIR 111 246 -16 1914 166 0 10 chr3 79575509 79575823 -147948755 - AluJo SINE Alu -1 311 1 29 0 0 0 chr3 79575835 79575864 -147948714 + AT_rich Low_complexity Low_complexity 1 29 0 1056 187 50 10 chr3 79576446 79576644 -147947934 - MER58A DNA MER1_type 0 224 19 640 261 261 31 chr3 79577364 79577850 -147946728 + MLT1L LTR MaLR 1 598 -17 450 295 80 50 chr3 79578369 79578685 -147945893 + MLT1L LTR MaLR 102 531 -84 250 330 136 27 chr3 79578751 79578972 -147945606 - L2 LINE L2 -201 3071 2827 188 241 37 19 chr3 79579189 79579243 -147945335 + L2 LINE L2 3137 3191 -81 1100 140 0 0 chr3 79579244 79579433 -147945145 - AluSx SINE Alu 0 321 133 475 178 0 0 chr3 79579433 79579506 -147945072 - AluSx SINE Alu -237 75 3 249 294 18 73 chr3 79579646 79579755 -147944823 - MIR SINE MIR -85 123 21 251 271 103 19 chr3 79580076 79580183 -147944395 - MLT1J1 LTR MaLR 0 446 331 407 245 43 29 chr3 79580286 79580425 -147944153 - MLT1J1 LTR MaLR -300 146 6 526 271 155 10 chr3 79580778 79580985 -147943593 - L2 LINE L2 0 3313 3077 2207 85 0 7 chr3 79581049 79581380 -147943198 - AluSc SINE Alu 0 329 1 353 271 42 10 chr3 79581756 79581852 -147942726 - L2 LINE L2 -5 3267 3169 261 206 48 16 chr3 79582650 79582713 -147941865 - LTR33 LTR ERVL 0 521 457 327 25 0 0 chr3 79582781 79582821 -147941757 + (GA)n Simple_repeat Simple_repeat 1 40 0 588 297 28 19 chr3 79582849 79583061 -147941517 - LTR33 LTR ERVL -307 214 1 1519 138 5 0 chr3 79583101 79583325 -147941253 - AluJb SINE Alu 0 312 88 785 184 0 0 chr3 79583362 79583476 -147941102 - FLAM_C SINE Alu -28 115 2 373 300 80 20 chr3 79583564 79583714 -147940864 - L3 LINE CR1 -2 1575 1417 2134 88 41 3 chr3 79584021 79584315 -147940263 + AluY SINE Alu 7 311 0 213 194 0 0 chr3 79585720 79585756 -147938822 + polypyrimidine Low_complexity Low_complexity 4 39 0 218 314 99 0 chr3 79585762 79585793 -147938785 - L2 LINE L2 -16 3297 3270 2110 118 4 0 chr3 79585793 79586096 -147938482 - AluSx SINE Alu 0 304 1 218 314 99 0 chr3 79586096 79586183 -147938395 - L2 LINE L2 -43 3270 3165 910 216 25 99 chr3 79586199 79586437 -147938141 - MIR SINE MIR 0 262 46 1708 122 35 42 chr3 79586437 79586753 -147937825 + AluSx SINE Alu 1 314 0 910 216 25 99 chr3 79586753 79586795 -147937783 - MIR SINE MIR -216 46 2 1100 224 0 9 chr3 79586810 79587029 -147937549 + MER20 DNA MER1_type 1 217 -2 491 257 13 26 chr3 79587962 79588114 -147936464 + MER103 DNA DNA 17 166 0 * 606 324 85 32 chr3 79588112 79588432 -147936146 - LTR16C LTR ERVL -3 488 144 1963 203 61 5 chr3 79588432 79588807 -147935771 + MSTD LTR MaLR 1 396 0 606 324 85 32 chr3 79588807 79588863 -147935715 - LTR16C LTR ERVL -347 144 92 257 269 45 0 chr3 79589052 79589119 -147935459 - MIR3 SINE MIR -50 158 89 403 200 169 39 chr3 79589146 79589276 -147935302 + MIR SINE MIR 113 259 -3 444 310 75 21 chr3 79589404 79589591 -147934987 - L2 LINE L2 -1 3312 3116 573 231 12 59 chr3 79590030 79590199 -147934379 - L2 LINE L2 0 3313 3153 811 240 103 75 chr3 79590200 79590624 -147933954 - MLT1H LTR MaLR -1 547 123 287 267 86 9 chr3 79590710 79590826 -147933752 - L2 LINE L2 -168 3145 3021 21 0 0 0 chr3 79590951 79590972 -147933606 + AT_rich Low_complexity Low_complexity 1 21 0 356 175 62 12 chr3 79590972 79591052 -147933526 - MIR SINE MIR -109 153 70 436 311 91 56 chr3 79591058 79591453 -147933125 - MLT1K LTR MaLR -2 586 178 835 229 16 0 chr3 79592355 79592538 -147932040 - MIR SINE MIR -48 214 29 375 324 22 14 chr3 79592926 79593065 -147931513 - MIR SINE MIR -113 149 10 845 208 113 6 chr3 79593071 79593438 -147931140 + L1ME2 LINE L1 5705 6158 -6 628 255 80 38 chr3 79593557 79593796 -147930782 - L2 LINE L2 -1 3312 3064 360 221 8 15 chr3 79595327 79595458 -147929120 + GA-rich Low_complexity Low_complexity 2 131 0 356 274 0 10 chr3 79595486 79595588 -147928990 + L1ME4a LINE L1 5732 5832 -289 1893 134 11 3 chr3 79595603 79595886 -147928692 + AluJo SINE Alu 21 305 -7 201 167 0 0 chr3 79595886 79595923 -147928655 + G-rich Low_complexity Low_complexity 10 46 0 * 272 135 0 19 chr3 79595919 79595971 -147928607 + (GGAAA)n Simple_repeat Simple_repeat 5 55 0 428 253 199 0 chr3 79596101 79596287 -147928291 + L1ME4a LINE L1 5899 6121 0 854 225 95 0 chr3 79596611 79596811 -147927767 - MER20 DNA MER1_type 0 219 1 1596 183 0 0 chr3 79597000 79597268 -147927310 - AluJo SINE Alu -17 295 28 592 282 52 11 chr3 79597382 79597556 -147927022 + MIR SINE MIR 7 187 -75 439 288 28 74 chr3 79597620 79597835 -147926743 - MIR SINE MIR -1 261 57 2426 60 3 7 chr3 79597870 79598170 -147926408 + AluSc SINE Alu 1 299 -10 1517 251 112 44 chr3 79598253 79598826 -147925752 - MLT1E3 LTR MaLR -10 614 3 261 128 0 0 chr3 79600043 79600082 -147924496 - LTR16C LTR ERVL -252 239 201 323 178 31 163 chr3 79600082 79600211 -147924367 - LTR19C LTR ERV1 0 779 668 * 1504 201 24 102 chr3 79600200 79600653 -147923925 - LTR9 LTR ERV1 -194 418 1 511 236 64 43 chr3 79600653 79600782 -147923796 - LTR16C LTR ERVL -286 205 74 337 309 223 41 chr3 79600991 79601382 -147923196 + L2 LINE L2 2811 3272 0 2305 86 3 3 chr3 79601758 79602059 -147922519 - AluY SINE Alu -7 304 4 1120 103 7 0 chr3 79602181 79602327 -147922251 - AluSg SINE Alu -163 147 1 306 211 14 0 chr3 79602332 79602403 -147922175 - L1MC4a LINE L1 -1925 5883 5812 2155 135 3 3 chr3 79602439 79602751 -147921827 + AluSx SINE Alu 1 312 0 1026 219 111 86 chr3 79603101 79603508 -147921070 - L1ME2 LINE L1 -34 6130 5714 230 185 74 37 chr3 79603525 79603579 -147920999 - L1ME2 LINE L1 -2137 5671 5616 881 136 0 0 chr3 79603626 79603744 -147920834 + FLAM_C SINE Alu 1 118 -25 45 0 0 0 chr3 79603744 79603789 -147920789 + AT_rich Low_complexity Low_complexity 1 45 0 2153 123 0 16 chr3 79604540 79604850 -147919728 + AluSx SINE Alu 1 305 -7 197 240 20 20 chr3 79605917 79605967 -147918611 + L3b LINE CR1 1424 1473 -110 787 312 81 42 chr3 79606519 79607019 -147917559 - L2 LINE L2 -5 3308 2800 4416 94 25 3 chr3 79607057 79607686 -147916892 + L1MA4A LINE L1 5329 5971 -332 548 145 0 0 chr3 79607686 79607762 -147916816 + AluJ/FLAM SINE Alu 1 76 -236 2470 101 0 9 chr3 79607762 79608108 -147916470 + L1MA4A LINE L1 5957 6299 -4 523 328 25 0 chr3 79608170 79608368 -147916210 - L2 LINE L2 -550 2764 2562 1919 110 4 0 chr3 79610755 79611019 -147913559 - AluSg1 SINE Alu -6 303 39 3957 109 127 140 chr3 79611055 79612434 -147912144 - pTR5 LTR ERV1 0 2438 743 426 163 12 0 chr3 79612784 79612864 -147911714 - MER3 DNA MER1_type 0 209 129 1815 191 64 3 chr3 79612867 79613228 -147911350 + L1PB4 LINE L1 5759 6141 -15 737 164 62 0 chr3 79613232 79613360 -147911218 - MER3 DNA MER1_type -71 138 3 830 173 29 58 chr3 79613568 79613776 -147910802 - MER20 DNA MER1_type -17 202 1 391 188 50 20 chr3 79614559 79614660 -147909918 - MER103 DNA DNA -8 158 55 180 254 45 0 chr3 79615235 79615302 -147909276 - MIR SINE MIR -130 132 63 1163 175 10 82 chr3 79615435 79615726 -147908852 + Charlie4 DNA MER1_type 1 270 -1691 677 159 56 56 chr3 79615726 79615852 -147908726 - FLAM_C SINE Alu -17 126 1 562 165 90 23 chr3 79615852 79615985 -147908593 + Charlie4 DNA MER1_type 1815 1956 -5 592 233 83 13 chr3 79615990 79616147 -147908431 - MIR SINE MIR -85 123 5 198 215 62 31 chr3 79616189 79616254 -147908324 + L2 LINE L2 2634 2700 -614 332 280 192 19 chr3 79616295 79616509 -147908069 + L2 LINE L2 2814 3064 -249 977 265 103 61 chr3 79616533 79617006 -147907572 - L1M4 LINE L1 -873 5273 4755 2020 137 31 0 chr3 79617006 79617299 -147907279 - AluSx SINE Alu -10 302 1 977 265 103 61 chr3 79617299 79617579 -147906999 - L1M4 LINE L1 -1391 4755 4488 1494 155 48 17 chr3 79617601 79617892 -147906686 - L1MA9 LINE L1 -24 6288 5989 1398 267 75 101 chr3 79617921 79618418 -147906160 - L1M4 LINE L1 -1679 4467 3959 360 211 28 0 chr3 79618418 79618489 -147906089 - AluJo SINE Alu -167 135 63 1398 267 75 101 chr3 79618489 79618984 -147905594 - L1M4 LINE L1 -2187 3959 3453 1095 235 163 86 chr3 79618984 79619494 -147905084 + MLT1H LTR MaLR 1 549 0 1398 267 75 101 chr3 79619494 79619954 -147904624 - L1M4 LINE L1 -2693 3453 2987 2212 124 0 7 chr3 79619954 79620253 -147904325 + AluSx SINE Alu 1 297 -15 1398 267 75 101 chr3 79620253 79620385 -147904193 - L1M4 LINE L1 -3159 2987 2853 292 296 62 0 chr3 79620449 79620530 -147904048 - MER63 DNA MER1_type -7 1053 968 * 297 191 0 0 chr3 79620526 79620573 -147904005 - MER63 DNA MER1_type -310 750 704 183 254 134 15 chr3 79620900 79620967 -147903611 + L2 LINE L2 3193 3267 -5 228 175 228 0 chr3 79621939 79621996 -147902582 - MER117 DNA MER1_type -60 137 68 29 90 0 0 chr3 79622310 79622388 -147902190 + AT_rich Low_complexity Low_complexity 1 78 0 494 294 7 14 chr3 79622942 79623085 -147901493 - L2 LINE L2 -4 3309 3168 1164 223 140 55 chr3 79623392 79623898 -147900680 - MLT1F1 LTR MaLR -1 566 1 479 254 75 8 chr3 79623935 79624069 -147900509 - MER117 DNA MER1_type -53 144 2 482 187 76 111 chr3 79624539 79624710 -147899868 - L1MC4 LINE L1 -702 7340 7176 352 243 63 18 chr3 79624714 79624825 -147899753 + Charlie2 DNA MER1_type 45 160 -2622 542 242 6 61 chr3 79624935 79625100 -147899478 + Charlie2 DNA MER1_type 168 323 -2539 2573 181 74 43 chr3 79625106 79625494 -147899084 + Charlie2 DNA MER1_type 1856 2230 -632 875 118 0 29 chr3 79625494 79625630 -147898948 + FLAM_C SINE Alu 2 133 0 2573 181 74 43 chr3 79625630 79626148 -147898430 + Charlie2 DNA MER1_type 2230 2862 0 2188 110 0 0 chr3 79626718 79627008 -147897570 - AluSx SINE Alu -21 291 2 2833 71 3 0 chr3 79627486 79627837 -147896741 + L1PB1 LINE L1 5800 6151 0 215 392 0 10 chr3 79627837 79627934 -147896644 - MER5A DNA MER1_type -45 144 49 352 266 112 49 chr3 79628363 79628649 -147895929 + L1ME4a LINE L1 5574 5877 -244 249 224 0 0 chr3 79628688 79628746 -147895832 + GA-rich Low_complexity Low_complexity 4 61 0 310 217 65 0 chr3 79628782 79628874 -147895704 + L1ME4a LINE L1 6019 6116 -5 417 90 0 0 chr3 79629053 79629120 -147895458 + (TC)n Simple_repeat Simple_repeat 2 68 0 237 83 0 0 chr3 79629120 79629156 -147895422 + (CA)n Simple_repeat Simple_repeat 1 36 0 230 200 146 0 chr3 79629339 79629394 -147895184 - L2 LINE L2 0 3272 3210 586 101 0 0 chr3 79629505 79629584 -147894994 + AluJ/FRAM SINE Alu 227 305 -7 444 319 124 23 chr3 79629584 79629932 -147894646 - L2 LINE L2 -57 3256 2874 845 245 65 32 chr3 79630068 79630210 -147894368 - MER58A DNA MER1_type -2196 224 88 1673 176 11 4 chr3 79630210 79630489 -147894089 + AluJb SINE Alu 1 281 -31 276 30 0 0 chr3 79630493 79630526 -147894052 + (TAAA)n Simple_repeat Simple_repeat 4 36 0 845 245 65 32 chr3 79630526 79630594 -147893984 - MER58A DNA MER1_type -2334 86 2 2145 104 0 20 chr3 79630626 79630924 -147893654 + AluSq SINE Alu 1 292 -21 276 282 65 16 chr3 79630960 79631084 -147893494 - L2 LINE L2 -224 3048 2919 240 306 32 40 chr3 79631145 79631345 -147893233 - L2 LINE L2 -5 3267 3027 1881 172 16 3 chr3 79631802 79632110 -147892468 + AluJo SINE Alu 1 312 0 2209 219 86 29 chr3 79632530 79633078 -147891500 - MLT1E LTR MaLR 0 593 15 443 294 55 41 chr3 79633658 79633876 -147890702 - MIR SINE MIR -22 240 20 1215 208 9 0 chr3 79634167 79634383 -147890195 - MER58A DNA MER1_type -5 219 2 454 301 7 7 chr3 79635398 79635534 -147889044 - MIR SINE MIR -107 155 20 2132 124 7 0 chr3 79635552 79635850 -147888728 - AluSx SINE Alu -3 309 10 852 227 5 56 chr3 79636082 79636156 -147888422 + MER5A DNA MER1_type 2 78 -111 2409 97 3 0 chr3 79636156 79636464 -147888114 + AluSq SINE Alu 1 309 -4 852 227 5 56 chr3 79636464 79636587 -147887991 + MER5A DNA MER1_type 78 189 0 543 279 33 78 chr3 79636723 79636967 -147887611 - L2 LINE L2 -1 3271 3039 315 252 84 9 chr3 79637523 79637630 -147886948 - L2 LINE L2 0 3313 3199 1647 169 6 45 chr3 79637652 79637966 -147886612 - AluJo SINE Alu -10 302 1 756 136 0 10 chr3 79638041 79638177 -147886401 + L1P4 LINE L1 5641 5769 -396 2074 134 7 0 chr3 79638177 79638468 -147886110 + AluSx SINE Alu 1 293 -19 294 68 45 0 chr3 79638426 79638470 -147886108 + Alu SINE Alu 250 295 -7 1440 204 16 29 chr3 79638473 79638786 -147885792 + L1MD2 LINE L1 6039 6347 -12 2156 102 3 3 chr3 79638787 79639070 -147885508 + AluSx SINE Alu 2 313 0 262 0 0 0 chr3 79639070 79639099 -147885479 + (TAAA)n Simple_repeat Simple_repeat 2 112 0 1376 189 126 54 chr3 79639268 79639617 -147884961 + MLT1A2 LTR MaLR 1 374 0 186 189 0 0 chr3 79639635 79639672 -147884906 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 181 271 108 48 chr3 79640370 79640536 -147884042 - L2 LINE L2 -351 2963 2788 25 0 0 0 chr3 79640609 79640634 -147883944 + AT_rich Low_complexity Low_complexity 1 25 0 2418 57 0 13 chr3 79641526 79641841 -147882737 - AluY SINE Alu 0 311 1 1729 137 3 44 chr3 79642827 79643156 -147881422 - AluSx SINE Alu 0 317 1 638 268 12 6 chr3 79643385 79643549 -147881029 + MIR SINE MIR 31 195 -67 1853 192 39 9 chr3 79643640 79643974 -147880604 - MER7A DNA MER2_type -4 342 1 258 32 0 0 chr3 79643977 79644008 -147880570 + (TA)n Simple_repeat Simple_repeat 2 32 0 * 288 0 0 0 chr3 79644007 79644039 -147880539 + (CA)n Simple_repeat Simple_repeat 2 33 0 198 0 0 0 chr3 79644041 79644063 -147880515 + (TG)n Simple_repeat Simple_repeat 2 23 0 263 250 71 0 chr3 79645138 79645194 -147879384 + L2 LINE L2 3252 3311 -2 1512 157 3 72 chr3 79646076 79646215 -147878363 + L1MA5 LINE L1 6016 6124 -176 2097 121 3 3 chr3 79646215 79646504 -147878074 - AluJb SINE Alu -23 289 1 1512 157 3 72 chr3 79646504 79646670 -147877908 + L1MA5 LINE L1 6124 6300 0 656 276 15 25 chr3 79646755 79646951 -147877627 + MIR SINE MIR 52 245 -17 1434 213 59 27 chr3 79647392 79647801 -147876777 - Charlie4a DNA MER1_type -40 468 47 945 173 76 83 chr3 79647875 79647987 -147876591 - ORSL DNA AcHobo 0 275 164 2023 158 0 3 chr3 79647987 79648291 -147876287 + AluJb SINE Alu 1 303 -9 945 173 76 83 chr3 79648291 79648455 -147876123 - ORSL DNA AcHobo -111 164 1 582 221 0 0 chr3 79648667 79648771 -147875807 - MER81 DNA DNA -9 105 2 315 0 0 0 chr3 79649057 79649092 -147875486 + (T)n Simple_repeat Simple_repeat 1 35 0 228 345 179 0 chr3 79649305 79649450 -147875128 + MIR SINE MIR 91 261 -1 1728 163 61 0 chr3 79649557 79649851 -147874727 + AluJo SINE Alu 1 312 0 701 171 22 21 chr3 79649851 79650117 -147874461 + GA-rich Low_complexity Low_complexity 1 266 0 1148 163 71 5 chr3 79650298 79650494 -147874084 - MER3 DNA MER1_type 0 209 1 285 266 177 60 chr3 79650677 79650925 -147873653 - L1MC3 LINE L1 -1622 6163 5887 379 296 42 21 chr3 79650925 79651067 -147873511 - MIR SINE MIR -111 151 7 342 45 0 0 chr3 79651322 79651366 -147873212 + (CA)n Simple_repeat Simple_repeat 2 45 0 2306 113 0 0 chr3 79651844 79652145 -147872433 + AluSg SINE Alu 1 301 -9 745 194 102 5 chr3 79652244 79652450 -147872128 - Charlie5 DNA MER1_type -27 2585 2360 670 279 108 0 chr3 79652503 79652725 -147871853 + MIR SINE MIR 14 259 -3 2192 131 3 0 chr3 79653048 79653354 -147871224 + AluSx SINE Alu 1 307 -5 402 315 55 34 chr3 79653458 79653693 -147870885 + MIR SINE MIR 18 257 -5 1279 254 117 30 chr3 79654061 79654530 -147870048 - LTR33 LTR ERVL -10 511 2 312 27 0 0 chr3 79655271 79655308 -147869270 + (CA)n Simple_repeat Simple_repeat 1 37 0 27 73 0 0 chr3 79655500 79655555 -147869023 + AT_rich Low_complexity Low_complexity 1 55 0 255 370 0 19 chr3 79655562 79655670 -147868908 - MER5B DNA MER1_type -69 109 4 2370 89 7 0 chr3 79655675 79655977 -147868601 - AluY SINE Alu -7 304 1 1056 169 25 15 chr3 79656099 79656300 -147868278 - L1MB4 LINE L1 0 6180 5978 230 262 29 29 chr3 79656308 79656411 -147868167 - L1MB4 LINE L1 -295 5826 5724 219 103 0 0 chr3 79656436 79656475 -147868103 + (TG)n Simple_repeat Simple_repeat 2 40 0 488 257 7 0 chr3 79656475 79656611 -147867967 - L1MDb LINE L1 -5228 1181 1045 272 200 13 0 chr3 79656624 79656699 -147867879 + (TA)n Simple_repeat Simple_repeat 2 77 0 21 57 0 0 chr3 79656748 79656783 -147867795 + AT_rich Low_complexity Low_complexity 1 35 0 298 195 23 0 chr3 79656834 79656921 -147867657 + (TA)n Simple_repeat Simple_repeat 1 89 0 232 45 0 45 chr3 79657833 79657877 -147866701 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 240 318 73 33 chr3 79658690 79658841 -147865737 + L1ME LINE L1 332 488 -5908 827 136 171 0 chr3 79659580 79659720 -147864858 + MER21B LTR ERV1 329 492 -371 371 183 0 0 chr3 79659722 79659782 -147864796 + polypurine Low_complexity Low_complexity 3 62 0 749 176 4 31 chr3 79659784 79660025 -147864553 + GA-rich Low_complexity Low_complexity 1 234 0 3168 223 68 25 chr3 79660036 79661079 -147863499 + L1ME LINE L1 810 1858 -4548 * 4149 227 40 55 chr3 79661073 79662496 -147862082 + L1ME LINE L1 2627 4027 -2379 * 4882 229 99 34 chr3 79662490 79665359 -147859219 + L1MD1 LINE L1 1443 4126 -2414 2071 154 0 0 chr3 79665359 79665670 -147858908 + AluSx SINE Alu 1 311 -1 4882 229 99 34 chr3 79665670 79666027 -147858551 + L1MD1 LINE L1 4126 4459 -2081 1558 192 3 42 chr3 79666027 79666334 -147858244 + AluJb SINE Alu 1 295 -17 4882 229 99 34 chr3 79666334 79666623 -147857955 + L1MD1 LINE L1 4459 4728 -1812 1856 166 3 26 chr3 79666623 79666936 -147857642 + AluJb SINE Alu 1 306 -6 4882 229 99 34 chr3 79666936 79667367 -147857211 + L1MD1 LINE L1 4728 5737 -803 466 182 5 5 chr3 79667370 79667438 -147857140 + L1MD1 LINE L1 5921 5991 -524 1772 204 3 0 chr3 79667438 79667767 -147856811 + L1MD1 LINE L1 6302 6631 -5 466 182 5 5 chr3 79667767 79667791 -147856787 + L1MD1 LINE L1 5990 6013 -502 2216 93 9 37 chr3 79669815 79670136 -147854442 - MER1A DNA MER1_type -2 527 216 646 228 28 73 chr3 79670184 79670420 -147854158 - L2 LINE L2 -335 2937 2713 23 0 0 0 chr3 79670740 79670763 -147853815 + AT_rich Low_complexity Low_complexity 1 23 0 820 226 67 38 chr3 79671342 79671581 -147852997 + MIR SINE MIR 15 260 -2 259 309 99 0 chr3 79671949 79672030 -147852548 - MIR SINE MIR -170 92 4 200 294 79 57 chr3 79672445 79672622 -147851956 + MER5A DNA MER1_type 4 184 -5 27 0 0 0 chr3 79672845 79672872 -147851706 + AT_rich Low_complexity Low_complexity 1 27 0 2136 127 3 16 chr3 79672932 79673247 -147851331 - AluSx SINE Alu -1 311 1 358 283 40 20 chr3 79673355 79673507 -147851071 - L1MEc LINE L1 -5268 1128 974 2159 103 52 0 chr3 79674015 79674306 -147850272 + AluSg SINE Alu 1 306 -4 563 288 25 6 chr3 79674368 79674531 -147850047 + MIR SINE MIR 3 168 -94 914 276 56 31 chr3 79674534 79674870 -147849708 - MLT1I LTR MaLR -7 402 53 2955 135 97 5 chr3 79674870 79675315 -147849263 - MER66B LTR ERV1 0 486 1 914 276 56 31 chr3 79675315 79675370 -147849208 - MLT1I LTR MaLR -356 53 1 682 240 58 0 chr3 79675789 79675960 -147848618 - MIR SINE MIR -17 245 65 359 356 7 7 chr3 79676323 79676472 -147848106 - MIR SINE MIR -6 256 108 501 296 74 42 chr3 79677588 79677872 -147846706 + L2 LINE L2 1821 2113 -1201 210 322 0 34 chr3 79677943 79678061 -147846517 + L2 LINE L2 2561 2674 -640 1435 258 94 7 chr3 79678505 79678939 -147845639 - MLT1J LTR MaLR 0 511 40 210 37 0 0 chr3 79679239 79679266 -147845312 + (A)n Simple_repeat Simple_repeat 1 27 0 1504 183 42 25 chr3 79679469 79679754 -147844824 + AluJb SINE Alu 1 290 -22 183 42 0 0 chr3 79679755 79679779 -147844799 + (CA)n Simple_repeat Simple_repeat 1 24 0 411 357 0 0 chr3 79679847 79679959 -147844619 + L2 LINE L2 3197 3308 -5 2197 95 0 7 chr3 79680144 79680450 -147844128 - AluSg SINE Alu 0 304 1 1971 150 0 22 chr3 79680984 79681298 -147843280 - AluJo SINE Alu -3 309 3 1314 260 72 47 chr3 79681636 79682082 -147842496 + LTR16A1 LTR ERVL 1 457 0 2424 82 3 0 chr3 79682175 79682478 -147842100 - AluSp SINE Alu -9 304 1 1135 185 92 67 chr3 79682929 79683100 -147841478 - MER33 DNA MER1_type -2261 324 159 1666 200 100 3 chr3 79683100 79683430 -147841148 - MLT1A1 LTR MaLR 0 365 4 1135 185 92 67 chr3 79683430 79683585 -147840993 - MER33 DNA MER1_type -2426 159 1 22 0 0 0 chr3 79683807 79683829 -147840749 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr3 79683842 79683886 -147840692 + AT_rich Low_complexity Low_complexity 1 44 0 326 299 169 0 chr3 79683919 79684096 -147840482 - MIR SINE MIR -7 255 49 230 286 102 51 chr3 79684895 79684993 -147839585 - L2 LINE L2 0 3272 3170 485 211 0 29 chr3 79685125 79685229 -147839349 + MER103 DNA DNA 66 166 0 191 316 18 0 chr3 79685337 79685394 -147839184 - L2 LINE L2 -10 3262 3205 2069 130 7 10 chr3 79685582 79685889 -147838689 - AluSx SINE Alu -6 306 1 949 204 43 0 chr3 79685942 79686128 -147838450 + MLT1D LTR MaLR 3 196 -309 743 165 0 16 chr3 79686130 79686257 -147838321 + FLAM_C SINE Alu 6 130 -13 221 322 161 0 chr3 79686398 79686485 -147838093 + L2 LINE L2 3172 3272 0 294 95 0 0 chr3 79688314 79688356 -147836222 + (CA)n Simple_repeat Simple_repeat 1 42 0 2280 163 132 2 chr3 79889134 79889636 -147634942 - L1MD3 LINE L1 -19 7976 7410 244 222 0 56 chr3 79889637 79889709 -147634869 - MLT1E LTR MaLR -457 136 69 435 261 35 0 chr3 79889769 79889884 -147634694 + MIR SINE MIR 124 242 -20 523 348 127 41 chr3 79889898 79890606 -147633972 - L2 LINE L2 -2 3311 2550 456 190 0 0 chr3 79890941 79891020 -147633558 - MIR SINE MIR -97 165 87 5650 127 24 18 chr3 79891828 79892518 -147632060 - L1MA5 LINE L1 0 6300 5598 1542 221 35 0 chr3 79892518 79892808 -147631770 - AluJo SINE Alu -12 300 1 5650 127 24 18 chr3 79892808 79893264 -147631314 - L1MA5 LINE L1 -702 5598 5146 1888 147 38 0 chr3 79893265 79893606 -147630972 - L1MA5 LINE L1 -1222 4924 4571 224 328 64 48 chr3 79895267 79895392 -147629186 + MIR SINE MIR 62 188 -74 603 306 52 32 chr3 79895596 79895939 -147628639 + MLT1K LTR MaLR 223 572 -16 2035 164 3 52 chr3 79896965 79897349 -147627229 - MLT1A1 LTR MaLR 0 365 1 300 211 12 143 chr3 79897657 79897818 -147626760 - LTR41 LTR ERVL -6 767 628 1618 163 21 0 chr3 79897865 79898154 -147626424 + LTR31 LTR ERV1 3 297 -322 307 221 0 13 chr3 79898150 79898227 -147626351 - LTR41 LTR ERVL -149 624 549 * 426 237 123 18 chr3 79899910 79900024 -147624554 - MIR SINE MIR -67 141 16 3876 218 75 9 chr3 79903038 79904432 -147620146 - L1MD2 LINE L1 -13 6346 4879 762 168 0 0 chr3 79904450 79904569 -147620009 - FLAM_C SINE Alu -13 130 12 522 301 46 32 chr3 79904651 79904867 -147619711 - MIR SINE MIR -18 244 26 180 313 149 0 chr3 79905573 79905640 -147618938 + MIR SINE MIR 21 97 -165 364 233 35 0 chr3 79905887 79905973 -147618605 + L2 LINE L2 3186 3274 -39 2487 29 16 10 chr3 79906213 79906522 -147618056 + AluY SINE Alu 1 311 0 358 268 89 25 chr3 79906837 79906994 -147617584 + MIR SINE MIR 96 262 0 1397 170 44 47 chr3 79908461 79908802 -147615776 + LTR32 LTR ERVL 13 352 -119 834 163 0 7 chr3 79908860 79909013 -147615565 + LTR32 LTR ERVL 320 471 0 413 345 78 14 chr3 79909041 79909386 -147615192 - MLT1K LTR MaLR -33 555 189 282 299 131 0 chr3 79910064 79910171 -147614407 + MIR SINE MIR 51 171 -91 237 159 0 0 chr3 79911457 79911501 -147613077 + GA-rich Low_complexity Low_complexity 4 47 0 459 256 159 17 chr3 79911507 79911789 -147612789 - L2 LINE L2 -278 3035 2706 238 349 8 31 chr3 79911779 79911908 -147612670 - MIR SINE MIR -123 139 14 * 502 232 99 0 chr3 79912319 79912461 -147612117 + Charlie8 DNA MER1_type 110 265 -2152 740 239 70 33 chr3 79912536 79912670 -147611908 + MIR SINE MIR 1 149 -113 2677 99 3 3 chr3 79912670 79913034 -147611544 + THE1B LTR MaLR 1 364 0 740 239 70 33 chr3 79913034 79913142 -147611436 + MIR SINE MIR 149 252 -10 743 130 0 7 chr3 79913965 79914103 -147610475 + (TCTA)n Simple_repeat Simple_repeat 4 140 0 314 245 71 10 chr3 79916468 79916566 -147608012 - MER5A DNA MER1_type -76 113 10 9202 22 0 0 chr3 79916788 79917916 -147606662 - L1PA4 LINE L1 -1439 4707 3580 7233 37 8 1 chr3 79917917 79919321 -147605257 + L1PA4 LINE L1 4733 6142 -13 297 0 0 0 chr3 79919765 79919798 -147604780 + (TA)n Simple_repeat Simple_repeat 2 34 0 2773 126 11 4 chr3 79919817 79920271 -147604307 - L1PA16 LINE L1 -104 6062 5606 327 186 0 0 chr3 79920548 79920607 -147603971 - FLAM_A SINE Alu -11 122 64 465 19 0 0 chr3 79920875 79920929 -147603649 + (CA)n Simple_repeat Simple_repeat 1 54 0 315 304 33 61 chr3 79920993 79921174 -147603404 - MIR3 SINE MIR -27 181 6 316 246 93 38 chr3 79921357 79921457 -147603121 - MER113 DNA MER1_type? -322 199 106 1752 137 86 4 chr3 79921457 79921735 -147602843 + AluSq SINE Alu 1 301 -12 316 246 93 38 chr3 79921735 79921817 -147602761 - MER113 DNA MER1_type? -415 106 7 22 94 0 0 chr3 79922164 79922228 -147602350 + AT_rich Low_complexity Low_complexity 1 64 0 504 110 44 0 chr3 79924640 79924731 -147599847 + L1MA7 LINE L1 6187 6281 -10 190 325 61 49 chr3 79924769 79924932 -147599646 - MIR SINE MIR -44 218 54 219 188 0 0 chr3 79926458 79926506 -147598072 + CT-rich Low_complexity Low_complexity 4 51 0 269 200 18 0 chr3 79926506 79926561 -147598017 - MER5A DNA MER1_type -122 67 12 642 249 79 12 chr3 79926585 79926643 -147597935 - MER5A DNA MER1_type -7 182 129 1450 194 13 58 chr3 79926643 79926952 -147597626 + AluJo SINE Alu 1 295 -17 642 249 79 12 chr3 79926952 79927058 -147597520 - MER5A DNA MER1_type -60 129 7 644 217 0 0 chr3 79927111 79927226 -147597352 + FLAM_C SINE Alu 1 115 -18 908 283 78 65 chr3 79928433 79928999 -147595579 - MLT1K LTR MaLR -4 584 12 215 154 0 19 chr3 79929255 79929307 -147595271 + CT-rich Low_complexity Low_complexity 2 52 0 234 0 0 0 chr3 79929307 79929333 -147595245 + (CA)n Simple_repeat Simple_repeat 1 26 0 229 350 86 26 chr3 79929715 79929949 -147594629 + MIR SINE MIR 8 255 -7 224 230 108 14 chr3 79930095 79930169 -147594409 + MIR3 SINE MIR 85 165 -43 465 311 99 19 chr3 79930644 79930857 -147593721 - L2 LINE L2 -268 3004 2779 200 312 69 48 chr3 79930903 79931092 -147593486 - MIR SINE MIR -61 201 9 341 323 83 8 chr3 79931112 79931245 -147593333 - L2 LINE L2 -604 2710 2568 258 301 32 21 chr3 79931279 79931372 -147593206 + MIR3 SINE MIR 78 171 -37 25 0 0 0 chr3 79932512 79932537 -147592041 + AT_rich Low_complexity Low_complexity 1 25 0 223 337 55 25 chr3 79932579 79932781 -147591797 - L2 LINE L2 -10 3303 3096 265 349 88 26 chr3 79932826 79933018 -147591560 - L2 LINE L2 -371 2943 2740 502 293 61 38 chr3 79933075 79933287 -147591291 - L2 LINE L2 -224 3089 2873 342 346 24 0 chr3 79933385 79933512 -147591066 + L2 LINE L2 3179 3308 -5 709 212 85 0 chr3 79933724 79933889 -147590689 - MER20 DNA MER1_type -4 215 37 22 70 0 0 chr3 79934374 79934417 -147590161 + AT_rich Low_complexity Low_complexity 1 43 0 286 241 63 25 chr3 79934527 79934606 -147589972 - L2 LINE L2 -34 3279 3198 611 291 35 4 chr3 79935435 79935689 -147588889 - L1ME LINE L1 -378 5743 5482 325 193 9 46 chr3 79935772 79935881 -147588697 - L1MC5 LINE L1 -49 7912 7808 792 224 0 38 chr3 79936178 79936361 -147588217 - MER5A DNA MER1_type -3 186 11 346 268 216 0 chr3 79936378 79936531 -147588047 - MER5A DNA MER1_type 0 189 4 292 300 59 41 chr3 79938319 79938489 -147586089 + MIR SINE MIR 49 221 -41 199 333 9 56 chr3 79938601 79938709 -147585869 - MIR SINE MIR -56 206 104 2039 124 45 3 chr3 79938940 79939230 -147585348 - AluSx SINE Alu -10 302 1 2808 90 0 11 chr3 79939360 79939739 -147584839 - THE1C LTR MaLR 0 375 1 229 385 22 0 chr3 79939782 79939873 -147584705 - MIR SINE MIR -9 253 161 381 275 105 55 chr3 79940986 79941186 -147583392 + MIR SINE MIR 47 256 -6 1234 250 92 5 chr3 79941748 79942116 -147582462 + L1ME3 LINE L1 5424 5823 -341 734 193 7 7 chr3 79942117 79942252 -147582326 + AluJb SINE Alu 1 135 -177 1178 211 10 61 chr3 79942284 79942578 -147582000 + AluJo SINE Alu 23 301 -11 1179 196 44 40 chr3 79942584 79942905 -147581673 + L1ME3 LINE L1 5833 6154 -8 271 231 0 13 chr3 79942917 79942995 -147581583 + (TA)n Simple_repeat Simple_repeat 1 77 0 309 219 42 59 chr3 79943079 79943198 -147581380 + L1MC5 LINE L1 7452 7568 -393 2277 95 0 0 chr3 79943402 79943686 -147580892 + AluSc SINE Alu 1 284 -25 50 31 0 0 chr3 79943686 79943750 -147580828 + AT_rich Low_complexity Low_complexity 1 64 0 240 159 68 0 chr3 79944101 79944145 -147580433 - L2 LINE L2 -5 3267 3221 329 203 143 0 chr3 79946500 79946585 -147577993 - L1ME3A LINE L1 -28 6134 6040 354 300 46 33 chr3 79946591 79946898 -147577680 - L1M4 LINE L1 -801 5345 5035 694 318 135 21 chr3 79946941 79947372 -147577206 - L2 LINE L2 -532 2782 2303 361 222 98 39 chr3 79947551 79947704 -147576874 - MER103 DNA DNA -2 164 3 210 250 19 0 chr3 79948585 79948637 -147575941 + MIR SINE MIR 204 256 -6 457 307 127 5 chr3 79948892 79949097 -147575481 - MIR SINE MIR -30 232 3 650 144 18 0 chr3 79949849 79949960 -147574618 + AluJb SINE Alu 195 307 -5 1734 157 33 23 chr3 79950047 79950219 -147574359 - AluJo SINE Alu -10 302 124 198 0 0 0 chr3 79950219 79950241 -147574337 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 1734 157 33 23 chr3 79950241 79950367 -147574211 - AluJo SINE Alu -188 124 1 207 0 0 0 chr3 79950401 79950424 -147574154 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 806 71 26 0 chr3 79950818 79950931 -147573647 + L1PA8 LINE L1 6057 6172 0 370 307 158 40 chr3 79950981 79951209 -147573369 + MIR SINE MIR 8 262 0 1038 211 30 4 chr3 79951743 79952013 -147572565 - Charlie5 DNA MER1_type 0 2624 2348 661 209 65 65 chr3 79952004 79952128 -147572450 - Charlie5 DNA MER1_type -2421 203 77 * 1882 144 27 7 chr3 79952128 79952420 -147572158 + AluJb SINE Alu 1 298 -14 661 209 65 65 chr3 79952420 79952496 -147572082 - Charlie5 DNA MER1_type -2546 78 3 228 367 55 9 chr3 79952503 79952612 -147571966 + MIR SINE MIR 18 131 -77 1732 178 0 10 chr3 79953141 79953434 -147571144 - AluJo SINE Alu -9 303 14 610 330 55 78 chr3 79954254 79954765 -147569813 - L2 LINE L2 -16 3256 2758 338 336 0 9 chr3 79955001 79955111 -147569467 - MER5B DNA MER1_type -69 109 1 1957 141 38 30 chr3 79956049 79956419 -147568159 + THE1C LTR MaLR 3 375 0 8575 121 12 112 chr3 79956419 79958111 -147566467 + THE1C-int LTR MaLR 1 1523 -57 634 75 11 0 chr3 79958211 79958305 -147566273 + THE1C-int LTR MaLR 1486 1580 0 2134 138 36 16 chr3 79958310 79958673 -147565905 + THE1C LTR MaLR 6 375 0 256 196 0 0 chr3 79958674 79958720 -147565858 - L1MD2 LINE L1 -226 6133 6088 269 288 167 28 chr3 79958748 79959071 -147565507 - L1MC4a LINE L1 -1654 6154 5787 340 317 67 0 chr3 79960259 79960363 -147564215 + L2 LINE L2 3200 3310 -3 267 353 45 3 chr3 79960402 79960526 -147564052 + MIR SINE MIR 31 154 -62 * 821 232 75 50 chr3 79960522 79960763 -147563815 + MIR SINE MIR 5 251 -11 2262 84 0 29 chr3 79961113 79961421 -147563157 - AluY SINE Alu -12 299 1 1039 278 110 6 chr3 79962661 79963024 -147561554 - MLT1C LTR MaLR 0 467 67 348 161 0 0 chr3 79963036 79963117 -147561461 + (TA)n Simple_repeat Simple_repeat 2 82 0 340 138 35 0 chr3 79963117 79963175 -147561403 - MLT1C LTR MaLR -405 62 3 602 287 108 0 chr3 79963423 79963618 -147560960 + MIR SINE MIR 13 228 -34 255 293 189 59 chr3 79964616 79964838 -147559740 + MIR SINE MIR 12 262 0 201 143 0 0 chr3 79966450 79966485 -147558093 + (CA)n Simple_repeat Simple_repeat 1 35 0 307 375 145 0 chr3 79966548 79966788 -147557790 + L2 LINE L2 2791 3056 -257 332 330 25 34 chr3 79966813 79966931 -147557647 + L2 LINE L2 3197 3313 0 337 296 44 64 chr3 79967304 79967507 -147557071 - MLT1K LTR MaLR 0 588 390 2218 110 21 46 chr3 79968570 79968943 -147555635 - THE1B LTR MaLR 0 364 1 11078 103 19 1 chr3 79968943 79970493 -147554085 - THE1B-int LTR MaLR 0 1580 2 2004 146 25 30 chr3 79970494 79970858 -147553720 - THE1B LTR MaLR 0 364 3 33 25 0 0 chr3 79972576 79972616 -147551962 + AT_rich Low_complexity Low_complexity 1 40 0 256 279 70 23 chr3 79974327 79974413 -147550165 - L2 LINE L2 -12 3260 3171 * 289 186 34 0 chr3 79974390 79974449 -147550129 + L2 LINE L2 3249 3309 -4 790 291 59 33 chr3 79974950 79975221 -147549357 - MLT1I LTR MaLR -24 385 108 243 400 0 0 chr3 79975229 79975334 -147549244 + L2 LINE L2 3197 3301 -12 720 248 16 87 chr3 79975335 79975589 -147548989 - MER45C DNA AcHobo 0 953 718 242 281 18 0 chr3 79975668 79975725 -147548853 - MER45C DNA AcHobo -478 475 418 244 353 85 7 chr3 79976093 79976246 -147548332 - MIR3 SINE MIR -5 203 39 776 135 57 163 chr3 79976973 79977218 -147547360 + MER20 DNA MER1_type 1 219 0 513 257 172 60 chr3 79977988 79978389 -147546189 + LTR33A LTR ERVL 9 454 -69 600 313 43 13 chr3 79978695 79978928 -147545650 + MIR SINE MIR 23 262 0 265 171 286 29 chr3 79978945 79979050 -147545528 + MIR SINE MIR 129 260 -2 192 330 110 0 chr3 79980093 79980184 -147544394 - MIR SINE MIR -71 191 91 532 152 0 0 chr3 79980219 79980298 -147544280 + AluJ/FLAM SINE Alu 1 79 -233 2164 108 21 0 chr3 79980336 79980624 -147543954 + AluSx SINE Alu 1 294 -18 226 278 19 0 chr3 79981446 79981500 -147543078 + MER69 DNA AcHobo 5 59 -2467 542 247 91 11 chr3 79982061 79982247 -147542331 - MER90 LTR ERV1 -16 598 398 263 103 0 0 chr3 79982255 79982294 -147542284 + MADE1 DNA Mariner 1 39 -41 253 49 122 0 chr3 79982362 79982403 -147542175 - MADE1 DNA Mariner -32 48 3 955 233 70 55 chr3 79982403 79982747 -147541831 - MER90 LTR ERV1 -225 350 2 261 342 12 10 chr3 79982803 79982911 -147541667 + MIR SINE MIR 46 155 -53 688 306 77 4 chr3 79982925 79983160 -147541418 + MIR SINE MIR 4 255 -7 414 321 62 17 chr3 79983552 79983747 -147540831 - MIR3 SINE MIR -32 176 23 2468 111 14 0 chr3 79984717 79985076 -147539502 + THE1B LTR MaLR 1 364 0 749 301 42 8 chr3 79985239 79985475 -147539103 + MIR SINE MIR 5 248 -14 30 59 0 0 chr3 79986515 79986566 -147538012 + AT_rich Low_complexity Low_complexity 1 51 0 1619 106 127 67 chr3 79986879 79987162 -147537416 - AluSg SINE Alu -10 300 1 24 32 0 0 chr3 79987643 79987674 -147536904 + AT_rich Low_complexity Low_complexity 1 31 0 557 335 56 54 chr3 79987696 79988179 -147536399 - MLT1K LTR MaLR 0 588 105 627 264 25 19 chr3 79988338 79988497 -147536081 - MIR SINE MIR -52 210 51 2477 180 22 12 chr3 79988735 79989236 -147535342 + L1MB5 LINE L1 5646 6151 -23 197 227 0 0 chr3 79989242 79989286 -147535292 + L2 LINE L2 3270 3313 0 2629 165 67 53 chr3 79989419 79989648 -147534930 + L1MA9 LINE L1 4647 4871 -1441 2594 51 0 0 chr3 79989648 79989959 -147534619 - AluY SINE Alu 0 311 1 2629 165 67 53 chr3 79989959 79990671 -147533907 + L1MA9 LINE L1 4871 5611 -701 * 4524 139 50 3 chr3 79990658 79991425 -147533153 + L1PA15 LINE L1 5350 6152 -13 3019 171 71 3 chr3 79991430 79992032 -147532546 + L1MA9 LINE L1 5601 6243 -69 180 0 0 0 chr3 79992151 79992171 -147532407 + (TTG)n Simple_repeat Simple_repeat 2 21 0 414 277 57 39 chr3 79992938 79993207 -147531371 - MLT1H LTR MaLR -123 286 51 730 89 0 10 chr3 79993568 79993669 -147530909 + MLT1B LTR MaLR 291 390 0 407 292 78 7 chr3 79993670 79993824 -147530754 + MIR SINE MIR 78 242 -20 694 246 52 14 chr3 79994425 79994636 -147529942 + MER20 DNA MER1_type 1 219 0 186 150 0 0 chr3 79995318 79995358 -147529220 + (CAAT)n Simple_repeat Simple_repeat 1 40 0 335 300 9 27 chr3 79995718 79995828 -147528750 - MLT1K LTR MaLR -309 279 172 438 252 104 9 chr3 79996867 79996982 -147527596 + L2 LINE L2 3188 3313 0 11322 207 27 22 chr3 79997019 80000636 -147523942 - L1MC1 LINE L1 -377 6236 2507 2308 155 19 63 chr3 80000636 80001114 -147523464 - MSTB2 LTR MaLR 0 457 1 11322 207 27 22 chr3 80001114 80002314 -147522264 - L1MC1 LINE L1 -4106 2507 1314 4139 177 46 51 chr3 80002311 80003217 -147521361 - L1MC1 LINE L1 -5502 924 23 * 387 332 37 84 chr3 80003217 80003572 -147521006 - MLT1K LTR MaLR -161 427 90 345 311 60 40 chr3 80003689 80003840 -147520738 - MIR3 SINE MIR -54 154 1 212 288 30 0 chr3 80004385 80004451 -147520127 + MIR SINE MIR 81 148 -114 956 328 73 23 chr3 80005417 80005939 -147518639 - MLT1K LTR MaLR -2 586 39 511 254 9 0 chr3 80006459 80006569 -147518009 + MER5A DNA MER1_type 77 187 -2 444 288 159 0 chr3 80006672 80006835 -147517743 - MIR SINE MIR 0 262 74 1426 269 103 36 chr3 80007738 80008293 -147516285 + MLT1E LTR MaLR 2 593 0 211 184 0 0 chr3 80009612 80009650 -147514928 + (CTG)n Simple_repeat Simple_repeat 2 39 0 2129 227 52 21 chr3 80009698 80010214 -147514364 - MLT1F LTR MaLR 0 542 11 567 302 128 42 chr3 80010388 80010509 -147514069 - L2 LINE L2 -15 3298 3189 2314 166 34 5 chr3 80010509 80010926 -147513652 - MSTB1 LTR MaLR 0 432 4 567 302 128 42 chr3 80010926 80011382 -147513196 - L2 LINE L2 -124 3189 2667 184 322 107 33 chr3 80011803 80011924 -147512654 - L3b LINE CR1 -41 1542 1413 254 200 0 33 chr3 80012088 80012148 -147512430 - LTR67 LTR ERVL -16 541 484 449 329 107 21 chr3 80013446 80013680 -147510898 + MIR SINE MIR 8 261 -1 209 284 198 52 chr3 80014207 80014323 -147510255 + MIR SINE MIR 8 140 -122 785 233 5 29 chr3 80014357 80014563 -147510015 + L1MC3 LINE L1 5054 5254 -892 4742 186 18 3 chr3 80014569 80015484 -147509094 + L1MC3 LINE L1 5456 6383 -1402 4183 154 55 111 chr3 80015529 80016093 -147508485 + L1MC3 LINE L1 6694 7261 -524 356 54 0 250 chr3 80016093 80016185 -147508393 + MADE1 DNA Mariner 12 80 0 4183 154 55 111 chr3 80016185 80016665 -147507913 + L1MC3 LINE L1 7261 7766 -19 226 286 26 0 chr3 80016710 80016787 -147507791 - MIR SINE MIR -46 216 138 244 390 8 8 chr3 80017540 80017663 -147506915 + L3 LINE CR1 1245 1367 -210 574 216 156 25 chr3 80018467 80018794 -147505784 - MLT1E1 LTR MaLR -230 424 7 1803 135 62 21 chr3 80021608 80021919 -147502659 - AluSx SINE Alu 0 312 1 372 192 42 33 chr3 80021992 80022112 -147502466 - MARNA DNA Mariner -234 352 232 194 361 0 0 chr3 80022267 80022328 -147502250 - MIR SINE MIR -19 243 183 222 174 0 0 chr3 80022409 80022455 -147502123 + (TATG)n Simple_repeat Simple_repeat 3 48 0 326 303 11 0 chr3 80023616 80023705 -147500873 + MIR3 SINE MIR 95 184 -24 2371 90 3 3 chr3 80023837 80024147 -147500431 - AluSg SINE Alu 0 310 1 227 328 0 0 chr3 80024509 80024570 -147500008 - L2 LINE L2 -12 3301 3241 * 405 318 11 2 chr3 80024566 80024690 -147499888 + MIR SINE MIR 17 140 -68 357 252 20 66 chr3 80024708 80024859 -147499719 + MIR SINE MIR 73 216 -46 238 294 71 54 chr3 80025562 80025746 -147498832 - MIR SINE MIR -16 246 60 504 239 15 8 chr3 80027027 80027157 -147497421 + MIR SINE MIR 123 253 -9 885 196 18 0 chr3 80027192 80027355 -147497223 - FAM SINE Alu -9 166 1 232 358 93 31 chr3 80027493 80027655 -147496923 + L2 LINE L2 3096 3267 -5 495 306 111 10 chr3 80028694 80028893 -147495685 + MIR SINE MIR 31 249 -13 5997 133 12 9 chr3 80028913 80029902 -147494676 - L1MA4 LINE L1 0 6300 5309 2644 32 10 0 chr3 80030284 80030595 -147493983 - AluYb8 SINE Alu -4 314 1 711 252 40 18 chr3 80030606 80030832 -147493746 - L1MB8 LINE L1 0 6178 5948 269 261 80 0 chr3 80030978 80031066 -147493512 - MER5A DNA MER1_type -85 104 10 483 326 53 30 chr3 80031121 80031425 -147493153 - MLT1I LTR MaLR -79 330 20 205 341 45 0 chr3 80031599 80031687 -147492891 - MIR3 SINE MIR -6 202 111 566 305 39 26 chr3 80032385 80032648 -147491930 + MIR SINE MIR 2 262 0 256 180 0 0 chr3 80032827 80032877 -147491701 - Charlie8 DNA MER1_type -2265 152 103 316 224 47 12 chr3 80033039 80033124 -147491454 + MER5A DNA MER1_type 93 180 -9 2039 129 7 0 chr3 80033127 80033421 -147491157 - AluSx SINE Alu -16 296 1 1788 120 128 58 chr3 80033488 80033888 -147490690 - MSTA LTR MaLR 0 428 1 861 133 38 100 chr3 80033910 80034120 -147490458 - L1MA10 LINE L1 -29 6305 6109 325 233 73 107 chr3 80034879 80035029 -147489549 - MIR SINE MIR -12 250 106 327 312 20 14 chr3 80035326 80035503 -147489075 - MLT1H LTR MaLR -144 265 86 321 280 102 34 chr3 80036184 80036302 -147488276 + MER63 DNA MER1_type 1 752 -310 180 262 0 0 chr3 80037338 80037380 -147487198 - L2 LINE L2 -208 3064 3023 2915 169 16 88 chr3 80037448 80038190 -147486388 - LTR8 LTR ERV1 -2 689 1 375 238 74 74 chr3 80039618 80039807 -147484771 + MER5A DNA MER1_type 1 189 0 1137 268 57 52 chr3 80039923 80040254 -147484324 + MER119 DNA MER1_type 5 342 -241 2127 98 4 0 chr3 80040254 80040530 -147484048 - AluSp SINE Alu -25 288 12 1137 268 57 52 chr3 80040530 80040773 -147483805 + MER119 DNA MER1_type 342 582 -1 297 299 92 0 chr3 80040989 80041076 -147483502 + MIR SINE MIR 30 124 -84 181 255 64 0 chr3 80041128 80041175 -147483403 - L2 LINE L2 -13 3259 3210 * 339 208 67 67 chr3 80041152 80041272 -147483306 - MIR SINE MIR -34 228 109 269 200 0 0 chr3 80041397 80041447 -147483131 + Alu SINE Alu 249 298 -4 22 0 0 0 chr3 80042090 80042112 -147482466 + AT_rich Low_complexity Low_complexity 1 22 0 1833 160 3 7 chr3 80042549 80042837 -147481741 - AluJb SINE Alu -5 307 21 786 277 0 5 chr3 80043900 80044084 -147480494 - MER58A DNA MER1_type -23 201 19 183 242 187 55 chr3 80044380 80044471 -147480107 + MIR SINE MIR 38 140 -68 472 288 134 6 chr3 80044517 80044689 -147479889 + MIR SINE MIR 41 237 -25 880 261 5 9 chr3 80045986 80046204 -147478374 - MER58A DNA MER1_type -7 217 1 253 280 84 0 chr3 80046247 80046354 -147478224 + Charlie8 DNA MER1_type 160 275 -2142 283 263 88 119 chr3 80046796 80046990 -147477588 + MER5A DNA MER1_type 1 188 -1 272 290 87 36 chr3 80047158 80047296 -147477282 + MIR3 SINE MIR 39 183 -25 783 237 12 17 chr3 80047422 80047595 -147476983 + MER5B DNA MER1_type 2 173 -5 2712 144 30 12 chr3 80047835 80048336 -147476242 - MER34B LTR ERV1 -20 545 36 498 237 71 6 chr3 80048415 80048584 -147475994 - MLT2E LTR ERVL -33 595 416 1105 223 63 55 chr3 80048589 80049091 -147475487 - MER34B LTR ERV1 -5 560 6 503 253 90 39 chr3 80049179 80049357 -147475221 - MLT2E LTR ERVL -332 296 110 272 359 39 0 chr3 80050296 80050399 -147474179 + MIR3 SINE MIR 54 160 -48 279 274 21 0 chr3 80050514 80050609 -147473969 - L1MD3 LINE L1 -170 7825 7729 360 222 14 156 chr3 80050631 80050843 -147473735 + Charlie8 DNA MER1_type 81 262 -2155 1275 207 31 96 chr3 80051002 80051388 -147473190 - MLT1A1 LTR MaLR 0 365 5 825 324 8 4 chr3 80051702 80051946 -147472632 + MIR SINE MIR 18 262 0 601 338 19 0 chr3 80052077 80052284 -147472294 + L3 LINE CR1 1285 1495 -82 250 162 88 0 chr3 80052293 80052361 -147472217 - MER3 DNA MER1_type -16 193 120 671 196 0 39 chr3 80052384 80052537 -147472041 - MER3 DNA MER1_type -59 150 4 220 302 104 0 chr3 80052658 80052754 -147471824 + MIR SINE MIR 82 187 -75 301 340 119 6 chr3 80052927 80053086 -147471492 - MIR SINE MIR -5 257 81 252 86 0 0 chr3 80053173 80053208 -147471370 + (CATA)n Simple_repeat Simple_repeat 1 35 0 199 329 269 6 chr3 80053208 80053375 -147471203 - MIR SINE MIR -44 218 8 464 249 98 46 chr3 80054736 80054909 -147469669 - MIR SINE MIR -15 247 66 1797 215 57 39 chr3 80055685 80056177 -147468401 + MLT1D LTR MaLR 1 501 -4 2435 153 45 11 chr3 80057572 80058044 -147466534 + L1MA4A LINE L1 5812 6299 -4 363 301 63 21 chr3 80058134 80058336 -147466242 - MIR SINE MIR -6 256 46 209 375 48 10 chr3 80058769 80058873 -147465705 - L2 LINE L2 -239 3033 2926 207 0 0 0 chr3 80059392 80059415 -147465163 + (T)n Simple_repeat Simple_repeat 1 23 0 200 143 114 0 chr3 80059594 80059629 -147464949 + L2 LINE L2 3265 3303 -10 540 324 52 6 chr3 80059768 80059941 -147464637 - MIR SINE MIR -29 233 53 318 357 29 21 chr3 80060634 80060774 -147463804 + MER5A DNA MER1_type 47 187 -2 980 229 4 46 chr3 80061137 80061377 -147463201 - MIR SINE MIR -4 258 29 276 336 8 47 chr3 80061601 80061729 -147462849 - MIR SINE MIR -119 143 21 2118 118 35 59 chr3 80062012 80062221 -147462357 - THE1B LTR MaLR 0 364 166 2333 95 3 3 chr3 80062221 80062526 -147462052 + AluSg SINE Alu 1 305 -5 2118 118 35 59 chr3 80062526 80062689 -147461889 - THE1B LTR MaLR -198 166 1 369 327 68 6 chr3 80063080 80063242 -147461336 + MIR SINE MIR 77 248 -14 233 257 29 14 chr3 80063497 80063567 -147461011 + MIR SINE MIR 162 232 -30 511 168 52 152 chr3 80064038 80064229 -147460349 + MER5B DNA MER1_type 1 172 -6 2391 76 3 0 chr3 80066422 80066726 -147457852 + AluY SINE Alu 1 305 -6 23 0 0 0 chr3 80067121 80067144 -147457434 + AT_rich Low_complexity Low_complexity 1 23 0 207 282 71 0 chr3 80067496 80067551 -147457027 + MIR SINE MIR 106 170 -92 3746 61 2 0 chr3 80067551 80068025 -147456553 - L1PA8 LINE L1 0 6172 5698 207 282 71 0 chr3 80068025 80068054 -147456524 + MIR SINE MIR 170 196 -66 481 213 33 135 chr3 80068070 80068314 -147456264 - MER102a DNA MER1_type -5 325 107 502 280 16 0 chr3 80069382 80069507 -147455071 + L2 LINE L2 3146 3272 0 446 351 23 12 chr3 80069624 80069795 -147454783 - MIR SINE MIR -89 173 1 210 333 0 0 chr3 80072028 80072091 -147452487 - MIR SINE MIR 0 262 200 215 158 26 0 chr3 80072094 80072132 -147452446 + MER5B DNA MER1_type 140 178 0 6014 94 41 3 chr3 80072589 80073114 -147451464 - L1PA13 LINE L1 0 6163 5660 1794 143 69 39 chr3 80073114 80073478 -147451100 + THE1C LTR MaLR 1 375 0 8598 128 75 34 chr3 80073478 80074994 -147449584 + THE1C-int LTR MaLR 1 1578 -2 1570 136 82 62 chr3 80074996 80075364 -147449214 + THE1C LTR MaLR 1 375 0 6014 94 41 3 chr3 80075364 80075990 -147448588 - L1PA13 LINE L1 -503 5660 4999 345 151 0 0 chr3 80075998 80076071 -147448507 - L1 LINE L1 -1094 5052 4980 15392 27 1 5 chr3 80076110 80078719 -147445859 - L1PA4 LINE L1 -3 6152 3553 12585 184 24 3 chr3 80078720 80081406 -147443172 - L1PA13 LINE L1 -1153 4993 2252 530 219 0 31 chr3 80081414 80081542 -147443036 + MIR SINE MIR 74 197 -65 534 326 50 21 chr3 80081742 80081981 -147442597 + MIR SINE MIR 13 258 -4 597 219 81 86 chr3 80082030 80082138 -147442440 + MER58A DNA MER1_type 11 119 -2301 1173 160 14 0 chr3 80082138 80082350 -147442228 - L1MA5A LINE L1 -3 6294 6080 597 219 81 86 chr3 80082350 80082451 -147442127 + MER58A DNA MER1_type 119 219 -5 400 324 0 0 chr3 80082520 80082631 -147441947 - MIR SINE MIR -99 163 53 243 269 15 15 chr3 80083881 80083948 -147440630 - L2 LINE L2 -9 3263 3197 211 357 78 20 chr3 80084656 80084950 -147439628 - L3 LINE CR1 -557 1020 710 372 242 53 20 chr3 80085721 80085890 -147438688 - L1ME LINE L1 -387 5734 5561 19395 128 10 51 chr3 80085910 80090501 -147434077 + L1PA7 LINE L1 8 4479 -1982 7581 102 24 18 chr3 80090504 80092423 -147432155 + L1PA7 LINE L1 4544 6473 0 279 259 99 0 chr3 80092434 80092565 -147432013 - L1ME LINE L1 -2261 5547 5404 1036 279 90 46 chr3 80092689 80093190 -147431388 - L1ME3A LINE L1 -13 6157 5635 5187 76 1 7 chr3 80093604 80094299 -147430279 - L1PA8 LINE L1 0 6172 5482 765 114 8 0 chr3 80094299 80094430 -147430148 - L1PA8 LINE L1 -958 5188 5057 * 3305 102 2 2 chr3 80094428 80094936 -147429642 + L1PA8 LINE L1 4537 5044 -1102 279 324 221 0 chr3 80095620 80095765 -147428813 - MIR SINE MIR -36 226 50 22 35 0 0 chr3 80096098 80096127 -147428451 + AT_rich Low_complexity Low_complexity 1 29 0 336 244 11 22 chr3 80096139 80096229 -147428349 - MIR SINE MIR -18 244 156 725 259 160 42 chr3 80096241 80096723 -147427855 - MLT1K LTR MaLR -36 552 14 235 299 39 65 chr3 80096752 80096906 -147427672 - MIR SINE MIR -109 153 4 308 283 104 46 chr3 80097480 80097720 -147426858 - L2 LINE L2 -41 3272 3019 755 316 74 34 chr3 80097832 80098386 -147426192 - MLT1K LTR MaLR -8 580 5 1837 151 57 6 chr3 80099416 80099747 -147424831 + MER7A DNA MER2_type 1 346 0 455 308 74 44 chr3 80099772 80099928 -147424650 - MLT1I LTR MaLR -22 387 237 1137 253 112 0 chr3 80099928 80100232 -147424346 + MER58B DNA MER1_type 4 341 0 455 308 74 44 chr3 80100232 80100413 -147424165 - MLT1I LTR MaLR -172 237 40 721 259 38 28 chr3 80100502 80100714 -147423864 - MIR SINE MIR -41 221 8 2200 123 3 0 chr3 80100980 80101280 -147423298 + AluSg SINE Alu 1 301 -9 1541 143 0 143 chr3 80101828 80102192 -147422386 + AluJb SINE Alu 1 312 0 21 0 0 0 chr3 80102379 80102400 -147422178 + AT_rich Low_complexity Low_complexity 1 21 0 6275 77 1 0 chr3 80102563 80103392 -147421186 + HERVL LTR ERVL 3025 3854 -1800 419 178 10 20 chr3 80103432 80103533 -147421045 - MSTC-int LTR MaLR -1550 101 2 1996 124 121 26 chr3 80103538 80103925 -147420653 - MSTC LTR MaLR -4 424 1 340 281 78 23 chr3 80104303 80104431 -147420147 - MLT1J2 LTR MaLR -49 401 267 1968 147 32 74 chr3 80104806 80105186 -147419392 - THE1B LTR MaLR 0 364 1 774 180 0 8 chr3 80106039 80106161 -147418417 + FLAM_C SINE Alu 1 122 -16 369 0 0 0 chr3 80106161 80106202 -147418376 + (TA)n Simple_repeat Simple_repeat 1 41 0 279 349 40 16 chr3 80106231 80106357 -147418221 + MIR SINE MIR 48 176 -86 730 217 74 6 chr3 80107035 80107210 -147417368 - MER5A DNA MER1_type 0 189 3 1628 206 3 22 chr3 80107281 80107596 -147416982 - AluJo SINE Alu -3 309 1 762 238 23 0 chr3 80107596 80107768 -147416810 + MER58A DNA MER1_type 48 223 -1 433 359 30 20 chr3 80108519 80108717 -147415861 - MIR SINE MIR -6 256 57 339 233 11 0 chr3 80109097 80109187 -147415391 + MER117 DNA MER1_type 1 91 -106 454 255 189 31 chr3 80109249 80109445 -147415133 - MIR SINE MIR -3 259 33 1744 234 6 22 chr3 80109552 80110044 -147414534 - Charlie4a DNA MER1_type 0 508 25 306 309 93 0 chr3 80110141 80110238 -147414340 + MIR SINE MIR 78 183 -79 288 289 84 60 chr3 80110553 80110883 -147413695 - L2 LINE L2 -220 3052 2695 312 227 136 136 chr3 80110979 80111296 -147413282 + Charlie8 DNA MER1_type 134 450 -1967 567 368 91 27 chr3 80111413 80112041 -147412537 - L2 LINE L2 -655 2659 1992 718 270 36 5 chr3 80112272 80112468 -147412110 - MIR SINE MIR -55 207 6 206 315 0 0 chr3 80112656 80112710 -147411868 + L2 LINE L2 3219 3272 0 2208 111 3 16 chr3 80113630 80113946 -147410632 + AluSq SINE Alu 1 312 -1 399 300 8 17 chr3 80116127 80116247 -147408331 - MER5A DNA MER1_type -22 167 49 1814 135 65 6 chr3 80116247 80116274 -147408304 - L1MA8 LINE L1 -3 6288 6264 15550 144 29 9 chr3 80116274 80118938 -147405640 - Tigger2 DNA MER2_type 0 2718 1 1814 135 65 6 chr3 80118938 80119265 -147405313 - L1MA8 LINE L1 -27 6264 5913 1906 163 134 8 chr3 80119403 80119783 -147404795 + MSTA LTR MaLR 1 428 0 191 325 145 12 chr3 80119906 80119989 -147404589 - MIR SINE MIR -143 119 26 742 275 67 34 chr3 80120266 80120593 -147403985 - LTR16A LTR ERVL -12 438 101 203 210 49 99 chr3 80121619 80121700 -147402878 - L3 LINE CR1 -5 1572 1496 796 179 0 32 chr3 80122081 80122237 -147402341 - MER5A DNA MER1_type -34 155 5 23 68 0 0 chr3 80122261 80122305 -147402273 + AT_rich Low_complexity Low_complexity 1 44 0 1919 161 0 0 chr3 80122389 80122669 -147401909 + AluSx SINE Alu 1 280 -32 324 0 0 0 chr3 80122672 80122708 -147401870 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 261 83 0 0 chr3 80122750 80122786 -147401792 + (TA)n Simple_repeat Simple_repeat 2 37 0 27 49 0 0 chr3 80123556 80123597 -147400981 + AT_rich Low_complexity Low_complexity 1 41 0 2397 127 25 0 chr3 80123616 80123971 -147400607 + THE1B LTR MaLR 1 364 0 674 296 93 45 chr3 80125542 80126184 -147398394 - L2 LINE L2 -25 3288 2620 482 258 67 22 chr3 80126309 80126487 -147398091 + MLT1L LTR MaLR 37 222 -393 266 302 229 5 chr3 80126646 80126851 -147397727 + MLT1L LTR MaLR 365 615 0 225 316 25 0 chr3 80127058 80127137 -147397441 - MLT1J LTR MaLR -212 299 219 730 287 114 42 chr3 80127456 80127815 -147396763 + MLT1I LTR MaLR 25 409 0 1378 89 13 18 chr3 80128147 80128371 -147396207 - MER11B LTR ERVK 0 1236 1014 * 2315 101 38 33 chr3 80128367 80128822 -147395756 - MER11B LTR ERVK -688 548 1 1830 172 83 51 chr3 80128840 80129310 -147395268 - MER31A LTR ERV1 0 485 1 57 47 0 0 chr3 80130526 80130611 -147393967 + AT_rich Low_complexity Low_complexity 1 85 0 482 324 72 31 chr3 80130876 80131098 -147393480 + MIR SINE MIR 16 246 -16 2284 144 25 0 chr3 80131113 80131468 -147393110 + THE1B LTR MaLR 1 364 0 8019 107 25 2 chr3 80131468 80132674 -147391904 + THE1B-int LTR MaLR 1 1233 -347 1794 153 3 0 chr3 80132674 80132962 -147391616 - MLT2A2 LTR ERVL -164 289 1 1522 81 0 0 chr3 80133024 80133234 -147391344 + THE1B-int LTR MaLR 1371 1580 0 2323 135 22 0 chr3 80133234 80133590 -147390988 + THE1B LTR MaLR 1 364 0 599 196 132 92 chr3 80133590 80133642 -147390936 + L1MD2 LINE L1 6086 6134 -225 297 51 0 0 chr3 80133642 80133681 -147390897 + (CA)n Simple_repeat Simple_repeat 2 40 0 599 196 132 92 chr3 80133681 80133878 -147390700 + L1MD2 LINE L1 6134 6345 -14 228 349 28 9 chr3 80134319 80134428 -147390150 - MLT2E LTR ERVL -477 151 41 452 270 17 0 chr3 80134987 80135102 -147389476 + L2 LINE L2 3196 3312 -1 7481 35 0 0 chr3 80136305 80137231 -147387347 - L1PA4 LINE L1 -8 6147 5222 1286 42 0 0 chr3 80137231 80137398 -147387180 + L1PA4 LINE L1 5065 5231 -915 1334 191 52 131 chr3 80138073 80138521 -147386057 - L1ME3A LINE L1 -69 6101 5710 1917 141 0 21 chr3 80138521 80138805 -147385773 - AluSq SINE Alu -21 292 15 1334 191 52 131 chr3 80138805 80138952 -147385626 - L1ME3A LINE L1 -460 5710 5553 219 146 0 0 chr3 80140045 80140086 -147384492 + (TA)n Simple_repeat Simple_repeat 1 41 0 2358 87 7 0 chr3 80140091 80140380 -147384198 + AluSc SINE Alu 1 291 -18 198 0 0 0 chr3 80140380 80140402 -147384176 + (TA)n Simple_repeat Simple_repeat 2 23 0 298 271 112 28 chr3 80140623 80140837 -147383741 - L1MC/D LINE L1 -2000 5808 5577 342 195 0 0 chr3 80140968 80141045 -147383533 + (CA)n Simple_repeat Simple_repeat 2 78 0 329 307 73 66 chr3 80141071 80141168 -147383410 + MIR3 SINE MIR 60 160 -48 526 252 10 92 chr3 80141168 80141249 -147383329 + MER5A DNA MER1_type 1 87 -102 2200 110 0 38 chr3 80141249 80141568 -147383010 + AluSg SINE Alu 1 307 -3 526 252 10 92 chr3 80141568 80141692 -147382886 + MER5A DNA MER1_type 87 189 0 329 307 73 66 chr3 80141692 80141731 -147382847 + MIR3 SINE MIR 160 197 -11 2366 111 14 32 chr3 80141904 80142275 -147382303 + THE1B LTR MaLR 1 364 0 374 322 70 10 chr3 80142647 80142846 -147381732 + MIR SINE MIR 23 233 -29 2263 73 11 0 chr3 80143143 80143429 -147381149 - AluY SINE Alu -6 305 17 230 309 75 32 chr3 80143439 80143533 -147381045 - L2 LINE L2 -3 3310 3213 711 257 12 39 chr3 80143769 80144026 -147380552 + MLT1K LTR MaLR 320 569 -19 432 260 65 16 chr3 80144250 80144373 -147380205 - MER58B DNA MER1_type 0 341 213 1115 293 127 45 chr3 80144425 80144993 -147379585 - L2 LINE L2 0 3313 2626 1382 193 29 6 chr3 80144993 80145309 -147379269 - MER33 DNA MER1_type -1 323 1 1115 293 127 45 chr3 80145309 80145694 -147378884 - L2 LINE L2 -687 2626 2274 1075 162 208 0 chr3 80146943 80147074 -147377504 - AluJo SINE Alu -8 294 191 650 12 0 12 chr3 80147074 80147154 -147377424 + (TTTTA)n Simple_repeat Simple_repeat 2 80 0 1075 162 208 0 chr3 80147154 80147263 -147377315 - AluJo SINE Alu -111 191 4 411 316 54 12 chr3 80147473 80147641 -147376937 + MIR SINE MIR 20 194 -68 2461 66 0 16 chr3 80148473 80148777 -147375801 + AluY SINE Alu 1 299 -12 3271 84 32 0 chr3 80149074 80149513 -147375065 - MLT2A2 LTR ERVL 0 453 1 627 315 94 0 chr3 80149543 80149756 -147374822 + MIR SINE MIR 18 250 -12 483 208 111 1 chr3 80149792 80149909 -147374669 + MIR SINE MIR 64 191 -65 653 275 71 21 chr3 80149944 80150184 -147374394 - MIR SINE MIR -6 256 5 542 296 95 21 chr3 80150188 80150472 -147374106 - MER102b DNA MER1_type 0 341 37 3773 190 103 60 chr3 80150526 80151832 -147372746 + Charlie1 DNA MER1_type 2 1251 -1510 1817 185 3 16 chr3 80151832 80152146 -147372432 - AluJb SINE Alu -2 310 1 3773 190 103 60 chr3 80152146 80152174 -147372404 + Charlie1 DNA MER1_type 1251 1276 -1485 4504 30 4 2 chr3 80152174 80152709 -147371869 + L1PA3 LINE L1 5620 6155 0 3773 190 103 60 chr3 80152709 80152761 -147371817 + Charlie1 DNA MER1_type 1276 2760 -1 643 319 0 0 chr3 80152771 80152959 -147371619 + MER5A DNA MER1_type 2 189 0 227 330 30 10 chr3 80153885 80153985 -147370593 + MER5B DNA MER1_type 29 130 -48 3758 157 30 4 chr3 80153989 80154692 -147369886 - L1MB2 LINE L1 -2 6169 5449 262 257 149 54 chr3 80154939 80155087 -147369491 + MIR SINE MIR 27 188 -74 1249 111 0 12 chr3 80155106 80155278 -147369300 - AluSg/x SINE Alu -11 301 132 220 333 86 0 chr3 80155278 80155383 -147369195 + MIR SINE MIR 51 164 -98 253 326 58 0 chr3 80155394 80155532 -147369046 + MLT1J LTR MaLR 13 158 -353 197 128 0 26 chr3 80156483 80156522 -147368056 + (TTCC)n Simple_repeat Simple_repeat 3 40 0 245 365 80 15 chr3 80156527 80156664 -147367914 - L2 LINE L2 0 3272 3127 1876 158 58 25 chr3 80157181 80157543 -147367035 + THE1C LTR MaLR 2 375 0 252 0 0 0 chr3 80158583 80158611 -147365967 + (A)n Simple_repeat Simple_repeat 1 28 0 530 167 37 0 chr3 80159316 80159424 -147365154 + L1MC3 LINE L1 7519 7630 -155 7398 41 10 5 chr3 80160254 80161205 -147363373 - L1PA5 LINE L1 0 6154 5203 214 286 0 0 chr3 80161210 80161266 -147363312 + MIR SINE MIR 92 147 -115 209 291 39 48 chr3 80161368 80161471 -147363107 + MIR SINE MIR 109 210 -52 459 346 63 51 chr3 80161513 80161900 -147362678 - L2 LINE L2 -79 3234 2840 2249 110 0 7 chr3 80161900 80162210 -147362368 + AluSp SINE Alu 1 308 -5 459 346 63 51 chr3 80162210 80162235 -147362343 - L2 LINE L2 -473 2840 2817 438 227 110 19 chr3 80162351 80162511 -147362067 + MIR SINE MIR 44 222 -40 643 256 183 0 chr3 80163566 80163757 -147360821 - MIR SINE MIR -27 235 10 610 252 14 43 chr3 80163817 80164027 -147360551 - MER20 DNA MER1_type 0 219 16 417 226 29 0 chr3 80165466 80165568 -147359010 + MSTC LTR MaLR 1 105 -323 1729 155 129 6 chr3 80165572 80165921 -147358657 - MSTA LTR MaLR 0 428 37 3041 57 2 117 chr3 80166021 80166527 -147358051 - LTR7 LTR ERV1 -2 448 1 346 287 20 10 chr3 80166544 80166645 -147357933 - L2 LINE L2 -3 3269 3168 * 470 282 7 47 chr3 80166636 80166721 -147357857 - MIR SINE MIR -19 243 165 1562 226 157 4 chr3 80166721 80167191 -147357387 - MLT1F LTR MaLR 0 542 1 470 282 7 47 chr3 80167191 80167254 -147357324 - MIR SINE MIR -97 165 101 191 300 71 14 chr3 80167459 80167529 -147357049 - MIR3 SINE MIR -54 154 81 1186 185 170 12 chr3 80168140 80168399 -147356179 - AluJo SINE Alu -2 300 1 973 142 49 111 chr3 80168456 80168682 -147355896 + MER20 DNA MER1_type 4 215 -4 201 341 23 38 chr3 80169353 80169485 -147355093 + MIR SINE MIR 8 137 -125 271 281 47 37 chr3 80169506 80169655 -147354923 + MIR SINE MIR 110 250 -12 433 245 87 54 chr3 80169828 80170163 -147354415 - L1ME4a LINE L1 -19 6102 5757 631 298 31 22 chr3 80171074 80171299 -147353279 - MIR SINE MIR 0 262 36 298 219 55 0 chr3 80172641 80172714 -147351864 - MER103 DNA DNA -73 93 17 268 136 197 0 chr3 80174016 80174082 -147350496 + L1MA7 LINE L1 6209 6287 -4 21 57 0 0 chr3 80174267 80174302 -147350276 + AT_rich Low_complexity Low_complexity 1 35 0 403 243 56 0 chr3 80174341 80174485 -147350093 + L1MC/D LINE L1 5337 5488 -2320 22 35 0 0 chr3 80175460 80175489 -147349089 + AT_rich Low_complexity Low_complexity 1 29 0 2387 133 8 0 chr3 80175577 80175938 -147348640 + THE1B LTR MaLR 1 364 0 521 270 72 7 chr3 80177267 80177419 -147347159 - MIR SINE MIR -15 247 86 479 307 65 94 chr3 80177940 80178292 -147346286 - L2 LINE L2 0 3272 2931 683 274 24 24 chr3 80179372 80179580 -147344998 - MIR SINE MIR -15 247 40 1643 207 39 42 chr3 80179725 80180135 -147344443 - LTR2 LTR ERV1 0 449 41 25 31 0 0 chr3 80180412 80180444 -147344134 + AT_rich Low_complexity Low_complexity 1 32 0 657 358 55 24 chr3 80180898 80181353 -147343225 + L2 LINE L2 2149 2617 -697 296 273 61 40 chr3 80181520 80181619 -147342959 + L2 LINE L2 3161 3261 -11 257 269 143 8 chr3 80181696 80181815 -147342763 + MIR SINE MIR 122 256 -6 414 342 40 41 chr3 80183113 80183449 -147341129 - L2 LINE L2 -224 3048 2703 613 306 0 12 chr3 80183879 80184039 -147340539 - MER5B DNA MER1_type -17 161 4 219 281 0 0 chr3 80184045 80184102 -147340476 + MIR SINE MIR 12 68 -194 404 301 66 0 chr3 80184248 80184384 -147340194 + MIR SINE MIR 118 262 0 26 0 0 0 chr3 80184942 80184968 -147339610 + AT_rich Low_complexity Low_complexity 1 26 0 2361 170 16 12 chr3 80185355 80185779 -147338799 - MSTC LTR MaLR -2 426 1 3617 245 113 49 chr3 80185779 80186061 -147338517 - MSTC-int LTR MaLR 0 1735 1473 1574 211 7 0 chr3 80186061 80186350 -147338228 + AluJo SINE Alu 1 291 -21 3617 245 113 49 chr3 80186350 80187343 -147337235 - MSTC-int LTR MaLR -262 1473 378 3033 96 58 0 chr3 80187343 80187383 -147337195 - MLT2A2 LTR ERVL 0 453 417 372 43 0 0 chr3 80187383 80187429 -147337149 + (TA)n Simple_repeat Simple_repeat 2 47 0 3033 96 58 0 chr3 80187429 80187816 -147336762 - MLT2A2 LTR ERVL -36 417 1 3431 84 14 12 chr3 80187816 80188006 -147336572 - HERVL-A2 LTR ERVL 0 5654 5466 2094 171 28 22 chr3 80188006 80188368 -147336210 + THE1B LTR MaLR 1 364 0 3431 84 14 12 chr3 80188368 80188679 -147335899 - HERVL-A2 LTR ERVL -188 5466 5152 25 0 0 0 chr3 80188802 80188827 -147335751 + AT_rich Low_complexity Low_complexity 1 25 0 243 0 0 0 chr3 80189545 80189572 -147335006 + (A)n Simple_repeat Simple_repeat 1 27 0 636 237 65 109 chr3 80189756 80190140 -147334438 + MLT1G3 LTR MaLR 1 413 -175 500 289 35 25 chr3 80190216 80190413 -147334165 + MIR SINE MIR 8 206 -56 183 156 0 0 chr3 80190447 80190479 -147334099 + (CACCAT)n Simple_repeat Simple_repeat 1 32 0 193 344 0 0 chr3 80190589 80190650 -147333928 + MIR SINE MIR 202 262 0 204 287 9 111 chr3 80191017 80191233 -147333345 - L2 LINE L2 -252 3020 2827 188 293 40 27 chr3 80191376 80191451 -147333127 - L2 LINE L2 -693 2621 2546 525 239 219 0 chr3 80191628 80191833 -147332745 + MIR SINE MIR 13 262 0 218 274 137 0 chr3 80191858 80191931 -147332647 - L2 LINE L2 -46 3267 3185 315 0 0 0 chr3 80192267 80192302 -147332276 + (T)n Simple_repeat Simple_repeat 1 35 0 209 160 0 20 chr3 80192959 80193009 -147331569 + CT-rich Low_complexity Low_complexity 3 51 0 270 149 0 21 chr3 80193341 80193388 -147331190 - MLT1K LTR MaLR -7 581 536 234 91 0 0 chr3 80193390 80193423 -147331155 + (T)n Simple_repeat Simple_repeat 1 33 0 227 273 182 0 chr3 80193585 80193673 -147330905 - MLT1K LTR MaLR -169 419 316 862 176 163 29 chr3 80193776 80194021 -147330557 - MER5C DNA MER1_type 0 324 47 841 266 22 22 chr3 80194054 80194276 -147330302 + MER58A DNA MER1_type 2 223 -1 1848 157 40 10 chr3 80194428 80194727 -147329851 + AluSg SINE Alu 1 308 -2 196 351 0 39 chr3 80195093 80195170 -147329408 - L2 LINE L2 -5 3308 3235 279 336 153 25 chr3 80195441 80195676 -147328902 - L2 LINE L2 -352 2962 2698 323 275 142 8 chr3 80195704 80195824 -147328754 - MIR SINE MIR 0 262 127 933 175 0 0 chr3 80196383 80196560 -147328018 + L1MB5 LINE L1 5653 5829 -345 1444 189 48 51 chr3 80196567 80196922 -147327656 + MER46B DNA MER2_type 8 236 0 1272 190 42 32 chr3 80196930 80197241 -147327337 + L1MB5 LINE L1 5848 6161 -13 1654 230 49 32 chr3 80198954 80199427 -147325151 - MLT1E LTR MaLR 0 593 113 3411 70 2 2 chr3 80199433 80199877 -147324701 - L1PA7 LINE L1 0 6154 5711 368 217 158 17 chr3 80199878 80199998 -147324580 - MLT1E LTR MaLR -448 145 9 231 61 0 0 chr3 80200001 80200034 -147324544 + (CA)n Simple_repeat Simple_repeat 2 34 0 453 284 49 6 chr3 80200555 80200738 -147323840 - MER117 DNA MER1_type -5 192 2 35 83 0 0 chr3 80200893 80200977 -147323601 + AT_rich Low_complexity Low_complexity 1 84 0 1149 210 32 75 chr3 80201514 80201886 -147322692 - MLT1A2 LTR MaLR -17 357 2 325 299 191 13 chr3 80201944 80202101 -147322477 - MIR SINE MIR -9 253 69 677 338 30 41 chr3 80202102 80202537 -147322041 - L2 LINE L2 0 3313 2884 296 270 0 0 chr3 80202652 80202715 -147321863 - MIR SINE MIR -6 256 194 230 405 27 18 chr3 80204204 80204315 -147320263 - MIR SINE MIR -81 127 16 25 31 0 0 chr3 80205168 80205200 -147319378 + AT_rich Low_complexity Low_complexity 1 32 0 520 219 25 56 chr3 80205474 80205634 -147318944 - MIR SINE MIR -21 241 87 392 37 19 0 chr3 80206214 80206268 -147318310 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 266 345 17 17 chr3 80206564 80206680 -147317898 - MIR SINE MIR -63 145 30 1131 159 20 0 chr3 80206851 80207052 -147317526 + MER3 DNA MER1_type 1 205 -4 287 257 18 46 chr3 80207218 80207327 -147317251 - MIR SINE MIR -65 197 92 1597 177 86 9 chr3 80207432 80207771 -147316807 - MLT1A1 LTR MaLR 0 365 1 259 370 14 14 chr3 80208134 80208272 -147316306 - MLT1K LTR MaLR -162 426 289 485 229 66 66 chr3 80208501 80208728 -147315850 - MLT1H1 LTR MaLR -291 239 13 243 0 0 0 chr3 80208961 80208988 -147315590 + (T)n Simple_repeat Simple_repeat 1 27 0 1037 286 55 14 chr3 80209606 80209973 -147314605 - MLT1H1 LTR MaLR -141 414 33 524 302 16 21 chr3 80209999 80210188 -147314390 - MLT1K LTR MaLR -393 195 8 353 248 156 0 chr3 80210299 80210408 -147314170 + MIR SINE MIR 65 190 -72 645 248 86 43 chr3 80211300 80211386 -147313192 - MER113 DNA MER1_type? -24 497 416 2234 106 3 0 chr3 80211386 80211679 -147312899 - AluSx SINE Alu -18 294 1 645 248 86 43 chr3 80211679 80211963 -147312615 - MER113 DNA MER1_type? -105 416 111 258 384 69 5 chr3 80212507 80212533 -147312045 + L2 LINE L2 2836 2859 -413 255 79 0 0 chr3 80212533 80212571 -147312007 + (CA)n Simple_repeat Simple_repeat 2 39 0 258 384 69 5 chr3 80212571 80212747 -147311831 + L2 LINE L2 2859 3051 -221 534 265 39 28 chr3 80212764 80212945 -147311633 + MIR SINE MIR 67 249 -13 182 184 0 82 chr3 80213194 80213243 -147311335 - MIR SINE MIR 0 262 218 1814 186 48 20 chr3 80213702 80214057 -147310521 + MLT1A1 LTR MaLR 1 365 0 1709 182 22 22 chr3 80214150 80214512 -147310066 - MLT1A1 LTR MaLR -3 362 1 211 222 0 0 chr3 80215519 80215564 -147309014 - L2 LINE L2 0 3313 3269 250 227 41 31 chr3 80215564 80215661 -147308917 - MLT1L LTR MaLR -9 606 509 282 228 22 33 chr3 80215800 80215892 -147308686 - MLT1L LTR MaLR -324 291 201 330 371 39 28 chr3 80216019 80216197 -147308381 - L2 LINE L2 -35 3237 3058 1637 152 62 17 chr3 80216468 80216757 -147307821 - AluJo SINE Alu 0 312 11 1970 129 0 0 chr3 80217187 80217451 -147307127 + AluSx SINE Alu 1 264 -48 2001 115 0 0 chr3 80217451 80217719 -147306859 + AluSq SINE Alu 36 305 -8 510 340 78 0 chr3 80217785 80218041 -147306537 - Charlie8 DNA MER1_type -2141 276 1 274 261 100 8 chr3 80218489 80218619 -147305959 + MER113 DNA MER1_type? 6 147 -374 382 220 112 64 chr3 80218624 80218863 -147305715 - MLT1H LTR MaLR -5 537 284 308 293 48 14 chr3 80218943 80219090 -147305488 - MLT1H LTR MaLR -387 162 11 2483 58 0 3 chr3 80219282 80219591 -147304987 - AluY SINE Alu -3 308 1 281 344 114 0 chr3 80222866 80222997 -147301581 - MIR SINE MIR -70 192 47 444 268 24 0 chr3 80223546 80223669 -147300909 - MIR SINE MIR 0 262 137 270 0 0 0 chr3 80224076 80224106 -147300472 + (A)n Simple_repeat Simple_repeat 1 30 0 2277 149 61 2 chr3 80224155 80224563 -147300015 - MSTB1 LTR MaLR 0 432 1 220 250 97 14 chr3 80225169 80225241 -147299337 - MIR3 SINE MIR -9 199 122 356 0 0 22 chr3 80225650 80225695 -147298883 + (CAAAA)n Simple_repeat Simple_repeat 4 47 0 551 267 30 0 chr3 80225707 80225842 -147298736 + MIR SINE MIR 35 173 -89 3899 132 67 5 chr3 80225842 80226511 -147298067 - MER50 LTR ERV1 -23 711 1 251 259 111 0 chr3 80226511 80226592 -147297986 + MIR SINE MIR 169 258 -4 963 221 64 92 chr3 80226713 80227275 -147297303 - LTR49 LTR ERV1 -49 546 1 288 0 0 0 chr3 80227520 80227552 -147297026 + (TAA)n Simple_repeat Simple_repeat 2 33 0 777 183 39 11 chr3 80227552 80227721 -147296857 - MER4C LTR ERV1 -8 457 281 1991 137 48 31 chr3 80227783 80228141 -147296437 - THE1B LTR MaLR 0 364 1 690 167 173 69 chr3 80228157 80228537 -147296041 - MER4A LTR ERV1 -200 347 1 1573 167 178 50 chr3 80228637 80229121 -147295457 + LTR49 LTR ERV1 1 739 -48 1562 205 61 14 chr3 80230450 80230875 -147293703 - LTR56 LTR ERV1 0 445 1 3473 138 49 0 chr3 80231950 80232517 -147292061 - LTR49 LTR ERV1 0 595 1 2723 179 56 59 chr3 80232567 80233261 -147291317 - LTR8A LTR ERV1 -2 725 34 22 35 0 0 chr3 80233338 80233367 -147291211 + AT_rich Low_complexity Low_complexity 1 29 0 243 221 35 0 chr3 80234417 80234503 -147290075 + (TG)n Simple_repeat Simple_repeat 2 90 0 868 185 0 19 chr3 80234518 80234675 -147289903 - FRAM SINE Alu -22 154 1 2041 142 129 101 chr3 80237326 80237961 -147286617 - MER4A LTR ERV1 -9 655 3 905 232 6 0 chr3 80238796 80238973 -147285605 - MER45A DNA AcHobo 0 178 1 186 43 0 0 chr3 80239556 80239579 -147284999 + (TA)n Simple_repeat Simple_repeat 1 23 0 2269 121 0 0 chr3 80242077 80242375 -147282203 - AluSc SINE Alu -11 298 1 4611 160 34 36 chr3 80242698 80243560 -147281018 - MER21B LTR ERV1 -3 860 1 642 305 119 67 chr3 80245001 80245582 -147278996 - L2 LINE L2 0 3313 2703 779 270 75 32 chr3 80245632 80245752 -147278826 + LTR16C LTR ERVL 143 256 -235 847 181 14 68 chr3 80245752 80245973 -147278605 + MER3 DNA MER1_type 1 209 0 779 270 75 32 chr3 80245973 80246130 -147278448 + LTR16C LTR ERVL 256 432 -59 230 319 33 11 chr3 80246143 80246234 -147278344 - L2 LINE L2 -609 2705 2613 656 242 98 0 chr3 80247147 80247300 -147277278 + MER63A DNA MER1_type 42 209 -1 690 326 124 33 chr3 80247381 80247686 -147276892 + L3 LINE CR1 120 396 -1181 807 226 66 9 chr3 80247686 80247898 -147276680 + MER58A DNA MER1_type 1 224 0 690 326 124 33 chr3 80247898 80248190 -147276388 + L3 LINE CR1 396 771 -806 562 257 248 5 chr3 80248276 80248490 -147276088 + L3 LINE CR1 1244 1509 -68 214 228 109 43 chr3 80248523 80248615 -147275963 + MIR3 SINE MIR 111 208 0 327 104 0 0 chr3 80248715 80248763 -147275815 + (T)n Simple_repeat Simple_repeat 1 48 0 559 246 91 4 chr3 80249621 80249853 -147274725 - MER20B DNA MER1_type 0 783 532 581 233 34 23 chr3 80250026 80250202 -147274376 - MER20B DNA MER1_type -314 469 292 1817 183 59 15 chr3 80250204 80250609 -147273969 + L1MB7 LINE L1 5742 6164 -20 641 263 82 4 chr3 80250614 80250846 -147273732 - MER20B DNA MER1_type -489 294 45 24 32 0 0 chr3 80251313 80251344 -147273234 + AT_rich Low_complexity Low_complexity 1 31 0 2233 106 3 0 chr3 80251355 80251648 -147272930 + AluSq SINE Alu 1 294 -19 267 31 0 0 chr3 80252600 80252632 -147271946 + (GA)n Simple_repeat Simple_repeat 1 32 0 771 144 14 95 chr3 80252917 80253139 -147271439 + L1MC5 LINE L1 7238 7441 -520 2446 201 63 68 chr3 80253149 80254190 -147270388 - L1MC5 LINE L1 -50 7911 6876 194 346 20 20 chr3 80254401 80254502 -147270076 - MIR SINE MIR -62 146 46 733 230 84 52 chr3 80255552 80255765 -147268813 - MER58A DNA MER1_type -4 220 1 347 270 206 0 chr3 80255962 80256151 -147268427 - Charlie8 DNA MER1_type -2157 260 33 213 345 0 12 chr3 80256203 80256287 -147268291 + GA-rich Low_complexity Low_complexity 1 83 0 550 248 34 27 chr3 80256593 80256742 -147267836 - MER5B DNA MER1_type -27 151 2 1224 224 7 20 chr3 80256952 80257255 -147267323 + MER58B DNA MER1_type 43 341 0 1731 202 31 23 chr3 80257377 80257857 -147266721 - Charlie4a DNA MER1_type -6 502 19 521 292 27 55 chr3 80257908 80258165 -147266413 - MLT1J2 LTR MaLR -190 260 11 739 233 31 16 chr3 80258224 80258417 -147266161 - MLT1A2 LTR MaLR -6 368 173 305 193 0 0 chr3 80258439 80258496 -147266082 - MLT1A2 LTR MaLR -410 57 1 14540 162 28 27 chr3 80259074 80261054 -147263524 - L1MA8 LINE L1 0 7710 5733 1761 182 7 10 chr3 80261054 80261351 -147263227 - AluJo SINE Alu -11 301 6 14540 162 28 27 chr3 80261351 80263774 -147260804 - L1MA8 LINE L1 -1977 5733 3299 17539 182 23 14 chr3 80263786 80266345 -147258233 + L1PA13 LINE L1 1 2535 -4279 2392 87 0 13 chr3 80266345 80266657 -147257921 - AluY SINE Alu -3 308 1 17539 182 23 14 chr3 80266657 80267769 -147256809 + L1PA13 LINE L1 2535 3635 -3179 1830 105 8 23 chr3 80267769 80268026 -147256552 + AluSg SINE Alu 54 306 -4 17539 182 23 14 chr3 80268026 80271081 -147253497 + L1PA13 LINE L1 3635 6803 -11 3378 239 31 57 chr3 80271134 80272538 -147252040 - L1MA8 LINE L1 -4314 3251 1884 1598 245 88 25 chr3 80272593 80273083 -147251495 - L1MA8 LINE L1 -6503 986 466 21 57 0 0 chr3 80273462 80273497 -147251081 + AT_rich Low_complexity Low_complexity 1 35 0 224 217 0 50 chr3 80274043 80274103 -147250475 + (TTCA)n Simple_repeat Simple_repeat 4 60 0 367 113 0 0 chr3 80274103 80274156 -147250422 + AluSg SINE Alu 1 53 -250 1005 61 0 0 chr3 80274157 80274289 -147250289 - L1P2 LINE L1 -356 5798 5667 1470 113 74 13 chr3 80274292 80274522 -147250056 + AluSg SINE Alu 55 298 -12 213 222 0 0 chr3 80274522 80274567 -147250011 - L2 LINE L2 -1 3312 3268 34899 97 8 14 chr3 80274597 80280768 -147243810 - L1PA6 LINE L1 0 6154 11 25 83 0 0 chr3 80280851 80280911 -147243667 + AT_rich Low_complexity Low_complexity 1 60 0 453 173 94 16 chr3 80281057 80281184 -147243394 + MER58C DNA MER1_type 79 215 0 2160 127 3 0 chr3 80281373 80281665 -147242913 - AluSg SINE Alu -17 293 1 1320 262 64 56 chr3 80281857 80282610 -147241968 - L2 LINE L2 0 3313 2550 506 329 80 36 chr3 80283773 80284162 -147240416 - MLT1K LTR MaLR -117 471 66 249 173 12 99 chr3 80284303 80284384 -147240194 - L1ME3A LINE L1 0 6170 6097 3891 140 13 2 chr3 80284836 80285471 -147239107 + MER44D DNA MER2_type 63 704 -1 613 298 77 0 chr3 80285573 80285781 -147238797 + LTR33 LTR ERVL 1 224 -297 1400 98 5 0 chr3 80286011 80286205 -147238373 - L1PA10 LINE L1 0 6168 5974 600 312 26 13 chr3 80286904 80287138 -147237440 + MIR SINE MIR 13 249 -13 291 148 12 99 chr3 80287295 80287376 -147237202 - L1ME3A LINE L1 0 6170 6097 792 229 0 6 chr3 80287505 80287662 -147236916 - FRAM SINE Alu -20 156 1 246 343 106 31 chr3 80287759 80288051 -147236527 + L2 LINE L2 2659 2972 -342 1297 226 15 18 chr3 80288277 80288604 -147235974 - MLT1D LTR MaLR 0 505 180 1071 201 38 0 chr3 80288615 80288824 -147235754 - MLT1D LTR MaLR -270 235 19 212 259 0 19 chr3 80289526 80289580 -147234998 + GA-rich Low_complexity Low_complexity 2 54 0 296 398 87 0 chr3 80289617 80289848 -147234730 + MIR SINE MIR 12 262 0 1034 218 27 9 chr3 80291335 80291555 -147233023 - MER58A DNA MER1_type 0 224 1 291 264 35 11 chr3 80291782 80291869 -147232709 + MLT1K LTR MaLR 154 242 -346 1254 267 97 20 chr3 80291905 80292347 -147232231 - LTR16C LTR ERVL -15 476 1 348 269 39 0 chr3 80292408 80292512 -147232066 + MLT1K LTR MaLR 447 554 -34 1027 292 119 28 chr3 80293451 80293848 -147230730 - L2 LINE L2 -3 3310 2868 989 194 66 5 chr3 80293848 80294059 -147230519 - MER58A DNA MER1_type 0 224 1 1027 292 119 28 chr3 80294059 80294096 -147230482 - L2 LINE L2 -445 2868 2836 1552 185 13 34 chr3 80294131 80294429 -147230149 - AluJb SINE Alu -16 296 5 1258 246 99 52 chr3 80294439 80294479 -147230099 - MLT2B1 LTR ERVL 0 520 483 243 0 0 0 chr3 80294479 80294506 -147230072 + (TG)n Simple_repeat Simple_repeat 1 27 0 1258 246 99 52 chr3 80294506 80294948 -147229630 - MLT2B1 LTR ERVL -37 483 15 5226 135 25 37 chr3 80294951 80295524 -147229054 - L1MA8 LINE L1 -4 6287 5731 2290 183 42 2 chr3 80295524 80295934 -147228644 - MSTB LTR MaLR 0 426 1 5226 135 25 37 chr3 80295934 80296404 -147228174 - L1MA8 LINE L1 -560 5731 5257 1707 252 22 15 chr3 80296579 80297461 -147227117 + L1PA10 LINE L1 4 1009 -4866 * 12543 144 51 17 chr3 80297450 80299409 -147225169 + L1PA10 LINE L1 2108 3999 -2484 1965 129 4 4 chr3 80299409 80299688 -147224890 - AluSg SINE Alu -9 301 23 12543 144 51 17 chr3 80299688 80301165 -147223413 + L1PA10 LINE L1 3999 5425 -1058 2552 110 3 11 chr3 80301165 80301530 -147223048 - THE1B LTR MaLR -2 362 1 11795 96 2 3 chr3 80301530 80303111 -147221467 - THE1B-int LTR MaLR 0 1580 1 2563 101 6 11 chr3 80303111 80303477 -147221101 - THE1B LTR MaLR 0 364 1 12543 144 51 17 chr3 80303477 80304024 -147220554 + L1PA10 LINE L1 5424 6474 -9 650 156 35 7 chr3 80304035 80304176 -147220402 - L1MA8 LINE L1 -874 5272 5128 1344 316 79 6 chr3 80304198 80304679 -147219899 - L2 LINE L2 -544 2770 2255 286 308 33 50 chr3 80305162 80305282 -147219296 - MIR3 SINE MIR 0 208 91 566 269 23 54 chr3 80305369 80305603 -147218975 - MIR SINE MIR -13 249 19 984 132 25 0 chr3 80306589 80306748 -147217830 - MER20 DNA MER1_type -3 216 54 3174 141 127 114 chr3 80306749 80306801 -147217777 + L1MC3 LINE L1 6771 6821 -964 2865 7 0 0 chr3 80306801 80307111 -147217467 - AluYa5 SINE Alu -1 310 1 3174 141 127 114 chr3 80307111 80307153 -147217425 + L1MC3 LINE L1 6821 6861 -924 534 31 0 0 chr3 80307153 80307217 -147217361 + (CA)n Simple_repeat Simple_repeat 2 65 0 3174 141 127 114 chr3 80307217 80307441 -147217137 + L1MC3 LINE L1 6861 7081 -704 229 293 0 12 chr3 80307441 80307523 -147217055 + MLT1F1 LTR MaLR 45 125 -442 3174 141 127 114 chr3 80307523 80307814 -147216764 + L1MC3 LINE L1 7081 7367 -418 2188 129 7 0 chr3 80307814 80308124 -147216454 + AluSx SINE Alu 1 312 0 3174 141 127 114 chr3 80308124 80308425 -147216153 + L1MC3 LINE L1 7367 7778 -7 320 212 15 0 chr3 80308426 80308492 -147216086 - MER20 DNA MER1_type -152 67 1 629 274 127 5 chr3 80308496 80308693 -147215885 + MIR SINE MIR 41 261 -1 21 36 0 0 chr3 80309320 80309348 -147215230 + AT_rich Low_complexity Low_complexity 1 28 0 1045 137 0 66 chr3 80309483 80309680 -147214898 + MER1B DNA MER1_type 156 339 0 595 325 121 19 chr3 80310004 80310376 -147214202 - L2 LINE L2 0 3313 2904 199 235 113 122 chr3 80310470 80310585 -147213993 - L2 LINE L2 -1 3312 3199 445 222 0 90 chr3 80310712 80310856 -147213722 + MIR3 SINE MIR 13 143 -65 185 233 0 0 chr3 80310885 80310928 -147213650 + L2 LINE L2 3215 3257 -15 706 292 173 32 chr3 80312621 80313170 -147211408 - L2 LINE L2 -1 3312 2667 282 284 95 10 chr3 80313217 80313341 -147211237 + MIR SINE MIR 34 165 -95 2058 203 90 41 chr3 80313578 80314188 -147210390 - LTR9B LTR ERV1 -2 642 3 2065 124 20 0 chr3 80314201 80314499 -147210079 - AluSx SINE Alu -4 308 5 253 246 0 15 chr3 80315226 80315291 -147209287 - U4 snRNA snRNA -78 67 4 632 160 57 5 chr3 80315951 80316145 -147208433 - Tigger3(Golem) DNA MER2_type -452 2577 2374 2568 69 5 45 chr3 80316146 80316205 -147208373 - L1PB1 LINE L1 0 6151 6091 2104 130 10 3 chr3 80316205 80316506 -147208072 - AluSx SINE Alu -9 303 1 2568 69 5 45 chr3 80316506 80316822 -147207756 - L1PB1 LINE L1 -60 6091 5791 345 125 0 0 chr3 80316837 80316893 -147207685 + (TA)n Simple_repeat Simple_repeat 1 56 0 13236 213 19 14 chr3 80316900 80321119 -147203459 - L1PB1 LINE L1 -372 5779 1550 315 291 9 0 chr3 80321119 80321220 -147203358 - MIR SINE MIR -68 140 60 327 224 56 47 chr3 80321799 80321921 -147202657 + MLT1F1 LTR MaLR 406 551 -16 2058 129 50 17 chr3 80322596 80322953 -147201625 - L1PB3 LINE L1 -4 6150 5782 329 150 64 23 chr3 80322975 80323148 -147201430 + (TA)n Simple_repeat Simple_repeat 1 180 0 344 176 61 0 chr3 80323212 80323518 -147201060 + (TA)n Simple_repeat Simple_repeat 1 324 0 249 155 56 14 chr3 80323518 80323589 -147200989 + (TATATG)n Simple_repeat Simple_repeat 4 77 0 364 219 0 0 chr3 80323589 80323662 -147200916 - L1PB3 LINE L1 -363 5791 5719 25 0 0 0 chr3 80323901 80323926 -147200652 + AT_rich Low_complexity Low_complexity 1 25 0 353 309 16 24 chr3 80325207 80325330 -147199248 + MIR SINE MIR 15 136 -126 189 200 182 18 chr3 80326581 80326636 -147197942 - L2 LINE L2 0 3313 3250 326 239 53 62 chr3 80326648 80326761 -147197817 - MIR SINE MIR -101 161 50 632 303 161 18 chr3 80327959 80328456 -147196122 + L2 LINE L2 2747 3313 0 238 318 108 62 chr3 80328491 80328620 -147195958 + L2 LINE L2 3129 3263 -9 213 65 0 0 chr3 80330733 80330764 -147193814 + (A)n Simple_repeat Simple_repeat 1 31 0 502 210 217 14 chr3 80330915 80331058 -147193520 + MER5A DNA MER1_type 15 186 -3 2271 98 0 0 chr3 80332152 80332466 -147192112 - AluSc SINE Alu 0 314 1 225 0 0 0 chr3 80332535 80332560 -147192018 + (CA)n Simple_repeat Simple_repeat 2 26 0 399 220 176 0 chr3 80333078 80333169 -147191409 - MIR SINE MIR -68 140 34 230 245 0 0 chr3 80333259 80333312 -147191266 - MLT-int LTR MaLR -1038 697 645 2122 212 19 12 chr3 80333313 80333798 -147190780 - MSTD-int LTR MaLR -1246 489 2 1082 207 109 58 chr3 80333800 80334124 -147190454 - MSTD LTR MaLR 0 396 49 1860 116 106 3 chr3 80334124 80334408 -147190170 - AluSq SINE Alu 0 313 1 1082 207 109 58 chr3 80334408 80334460 -147190118 - MSTD LTR MaLR -347 49 1 6680 233 22 7 chr3 80335384 80337154 -147187424 - L1PA13 LINE L1 -1887 4910 3115 5046 220 241 11 chr3 80337157 80338768 -147185810 - L1PA13 LINE L1 -4805 1982 1 315 207 0 0 chr3 80339031 80339089 -147185489 - L2 LINE L2 -1 3312 3255 301 301 29 0 chr3 80339090 80339193 -147185385 - L1MC4 LINE L1 -1323 6719 6614 807 286 33 39 chr3 80339382 80339790 -147184788 - L2 LINE L2 -226 3087 2676 256 363 0 0 chr3 80339788 80339868 -147184710 - L2 LINE L2 -5 3267 3188 * 1259 210 71 18 chr3 80340877 80341313 -147183265 + LTR38B LTR ERV1 97 545 -11 241 294 35 56 chr3 80341373 80341516 -147183062 + Charlie8 DNA MER1_type 145 284 -2133 1207 189 37 0 chr3 80341730 80341974 -147182604 + MER2 DNA MER2_type 77 329 -16 198 91 0 0 chr3 80342390 80342423 -147182155 + (CA)n Simple_repeat Simple_repeat 2 34 0 477 177 23 46 chr3 80342656 80342786 -147181792 - LTR38B LTR ERV1 -483 127 1 7298 40 2 17 chr3 80343017 80344222 -147180356 - L1PA5 LINE L1 -6 6148 4951 1126 44 0 0 chr3 80344752 80344888 -147179690 + L1PA3 LINE L1 6016 6151 -4 319 300 144 44 chr3 80345141 80345259 -147179319 - MER5A DNA MER1_type 0 189 49 2102 150 11 35 chr3 80345259 80345398 -147179180 - THE1B LTR MaLR 0 364 223 2247 92 0 10 chr3 80345398 80345693 -147178885 - AluY SINE Alu -19 292 1 2102 150 11 35 chr3 80345693 80345926 -147178652 - THE1B LTR MaLR -141 223 1 319 300 144 44 chr3 80345926 80345967 -147178611 - MER5A DNA MER1_type -139 50 14 477 260 39 10 chr3 80346551 80346701 -147177877 - MLT1C LTR MaLR 0 467 238 264 224 35 112 chr3 80346767 80346870 -147177708 - MLT1C LTR MaLR -322 183 92 1573 213 59 17 chr3 80346870 80347060 -147177518 - MLT1A2 LTR MaLR 0 374 193 180 0 0 0 chr3 80347060 80347080 -147177498 + (GA)n Simple_repeat Simple_repeat 2 21 0 1573 213 59 17 chr3 80347080 80347246 -147177332 - MLT1A2 LTR MaLR -181 193 3 264 224 35 112 chr3 80347246 80347285 -147177293 - MLT1C LTR MaLR -413 92 52 965 148 33 6 chr3 80347291 80347473 -147177105 - THE1B LTR MaLR 0 364 178 3078 26 3 0 chr3 80347574 80347951 -147176627 - L1PA3 LINE L1 -153 6002 5625 2130 23 4 0 chr3 80347951 80348217 -147176361 + L1P LINE L1 3863 4129 -2017 613 284 11 6 chr3 80348525 80348701 -147175877 - MIR SINE MIR 0 262 86 2318 126 59 35 chr3 80349117 80349314 -147175264 + MSTB1 LTR MaLR 1 192 -240 3369 109 14 2 chr3 80349314 80349819 -147174759 + MER75 DNA T2_type 4 514 0 2318 126 59 35 chr3 80349819 80350043 -147174535 + MSTB1 LTR MaLR 192 432 0 437 259 173 34 chr3 80350045 80350363 -147174215 - L2 LINE L2 -261 3052 2690 294 29 0 0 chr3 80350666 80350701 -147173877 + (TG)n Simple_repeat Simple_repeat 1 35 0 497 224 69 9 chr3 80351941 80352057 -147172521 + MER5A DNA MER1_type 1 123 -66 1685 158 20 68 chr3 80352057 80352412 -147172166 + LTR32 LTR ERVL 15 352 -119 812 162 47 0 chr3 80352461 80352609 -147171969 + LTR32 LTR ERVL 317 471 0 425 171 14 0 chr3 80352609 80352679 -147171899 + MER5A DNA MER1_type 119 189 0 594 266 49 30 chr3 80353073 80353313 -147171265 + MIR SINE MIR 3 249 -13 5246 58 14 3 chr3 80353977 80354630 -147169948 + PABL_A LTR ERV1 1 660 0 337 221 51 0 chr3 80354661 80354757 -147169821 + MIR SINE MIR 47 154 -54 241 172 52 0 chr3 80354862 80354920 -147169658 + (CTCA)n Simple_repeat Simple_repeat 3 63 0 284 314 49 0 chr3 80354957 80355059 -147169519 + MIR SINE MIR 109 215 -47 332 313 0 9 chr3 80355073 80355185 -147169393 - MIR SINE MIR 0 262 152 621 199 123 39 chr3 80355192 80355434 -147169144 - MIR SINE MIR 0 262 7 2338 96 3 0 chr3 80355582 80355885 -147168693 - AluY SINE Alu -7 304 1 380 288 44 50 chr3 80356739 80356899 -147167679 - MIR SINE MIR -98 164 6 1534 184 141 64 chr3 80357853 80358040 -147166538 + MLT1D LTR MaLR 3 174 -331 3538 152 0 0 chr3 80358040 80358567 -147166011 - MER1A DNA MER1_type 0 527 1 1534 184 141 64 chr3 80358567 80358846 -147165732 + MLT1D LTR MaLR 174 505 0 1193 137 9 73 chr3 80358968 80359201 -147165377 - MER20 DNA MER1_type -1 218 1 533 139 50 0 chr3 80360020 80360121 -147164457 + MLT1A1 LTR MaLR 256 361 -4 260 270 67 34 chr3 80360300 80360389 -147164189 + MIR SINE MIR 73 164 -98 683 256 98 29 chr3 80360906 80361183 -147163395 + MLT1K LTR MaLR 265 560 -28 3759 174 113 19 chr3 80362265 80363051 -147161527 + MER21B LTR ERV1 1 860 -3 536 311 73 35 chr3 80364569 80364913 -147159665 - MLT1K LTR MaLR -9 579 223 1368 206 62 21 chr3 80365103 80365476 -147159102 - MLT1B LTR MaLR 0 390 3 946 155 36 64 chr3 80365714 80365933 -147158645 - MER20 DNA MER1_type -6 213 1 212 338 14 0 chr3 80366043 80366114 -147158464 - MER5A DNA MER1_type -57 132 61 885 305 114 12 chr3 80366168 80366776 -147157802 - L2 LINE L2 -1 3312 2627 1613 277 97 24 chr3 80366776 80367408 -147157170 - L2 LINE L2 -1384 1930 1253 927 119 30 8 chr3 80367903 80368037 -147156541 + AluSq/x SINE Alu 1 137 -175 726 165 63 0 chr3 80368137 80368264 -147156314 + AluJb SINE Alu 159 293 -19 234 279 12 47 chr3 80368703 80368789 -147155789 + MARNA DNA Mariner 55 137 -449 351 281 0 0 chr3 80369324 80369438 -147155140 - L1ME LINE L1 -298 5823 5710 331 270 17 78 chr3 80369846 80369961 -147154617 - MIR3 SINE MIR -20 188 81 195 289 0 0 chr3 80371224 80371269 -147153309 - L2 LINE L2 -14 3258 3214 654 211 8 0 chr3 80371314 80371442 -147153136 + MER20 DNA MER1_type 86 214 -5 297 370 8 8 chr3 80371595 80371714 -147152864 + MER5A DNA MER1_type 7 125 -64 239 296 31 31 chr3 80371630 80371728 -147152850 - MER5A DNA MER1_type -30 159 62 * 268 225 0 200 chr3 80371901 80372101 -147152477 - MIR SINE MIR -54 208 49 260 267 219 0 chr3 80375263 80375368 -147149210 + MIR SINE MIR 91 218 -44 256 339 40 16 chr3 80375539 80375663 -147148915 - MIR SINE MIR -134 128 2 228 315 93 28 chr3 80375707 80375815 -147148763 - MIR SINE MIR -76 132 18 550 311 85 43 chr3 80376155 80376554 -147148024 + L2 LINE L2 2804 3219 -94 311 317 112 27 chr3 80376947 80377206 -147147372 - L1 LINE L1 -1810 4336 4056 561 244 68 17 chr3 80377379 80377555 -147147023 + MER58A DNA MER1_type 39 223 -1 1459 235 29 9 chr3 80377814 80378163 -147146415 - MLT1A2 LTR MaLR -4 370 15 7237 97 15 4 chr3 80378788 80380637 -147143941 - L1PA7 LINE L1 -4 6465 4602 11658 121 8 38 chr3 80380637 80383139 -147141439 - L1PA7 LINE L1 -3977 2484 4 3932 177 55 33 chr3 80383321 80384572 -147140006 - L1MB4 LINE L1 -1 6179 4898 762 143 20 18 chr3 80384580 80384822 -147139756 + AluSx SINE Alu 1 297 -13 4110 214 48 90 chr3 80384824 80385878 -147138700 - L1MB4 LINE L1 -1288 4858 3890 2356 72 7 16 chr3 80385878 80386182 -147138396 - AluY SINE Alu -10 301 1 4110 214 48 90 chr3 80386182 80386699 -147137879 - L1MB4 LINE L1 -2256 3890 3353 867 206 63 63 chr3 80386703 80386926 -147137652 - AluJo SINE Alu -8 304 82 1044 258 51 4 chr3 80386927 80387380 -147137198 - L1MB4 LINE L1 -2808 3338 2865 406 306 48 15 chr3 80387386 80387592 -147136986 - L1M4 LINE L1 -2139 4007 3795 845 198 120 0 chr3 80387606 80387864 -147136714 + MER33 DNA MER1_type 9 297 -27 924 283 131 10 chr3 80387898 80388526 -147136052 - L1M4 LINE L1 -2368 3778 3075 401 291 129 29 chr3 80388650 80388860 -147135718 - L1MEd LINE L1 -5887 232 2 1991 123 3 48 chr3 80389136 80389445 -147135133 + AluSx SINE Alu 6 300 -12 922 199 100 0 chr3 80389566 80389845 -147134733 + MER33 DNA MER1_type 1 293 -31 2296 95 7 0 chr3 80389845 80390141 -147134437 + AluY SINE Alu 1 298 -13 237 159 0 0 chr3 80390342 80390386 -147134192 + (TG)n Simple_repeat Simple_repeat 1 44 0 201 74 0 0 chr3 80390403 80390430 -147134148 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1084 141 4 106 chr3 80390453 80390680 -147133898 - AluSx SINE Alu -108 204 1 487 281 27 7 chr3 80390854 80391000 -147133578 + MIR SINE MIR 3 151 -111 469 133 0 0 chr3 80391000 80391075 -147133503 - MADE1 DNA Mariner 0 80 6 2083 137 0 0 chr3 80392195 80392487 -147132091 + AluSx SINE Alu 1 292 -20 1018 191 57 14 chr3 80393247 80393457 -147131121 + MER20 DNA MER1_type 1 219 0 439 259 259 5 chr3 80395129 80395330 -147129248 - MIR SINE MIR -4 258 7 2222 123 125 8 chr3 80397616 80397999 -147126579 + MSTA LTR MaLR 1 428 0 586 329 37 15 chr3 80398254 80398400 -147126178 - MLT1I LTR MaLR -21 388 247 924 225 5 5 chr3 80398400 80398609 -147125969 + MER3 DNA MER1_type 1 209 0 586 329 37 15 chr3 80398609 80398787 -147125791 - MLT1I LTR MaLR -162 247 57 368 317 105 64 chr3 80398871 80399420 -147125158 - L2 LINE L2 -71 3201 2635 1924 211 88 57 chr3 80399443 80399892 -147124686 - MLT1E1 LTR MaLR -10 644 169 1529 195 69 0 chr3 80399892 80400169 -147124409 + AluJo SINE Alu 1 296 -16 1924 211 88 57 chr3 80400169 80400335 -147124243 - MLT1E1 LTR MaLR -485 169 10 5881 112 26 8 chr3 80400335 80400636 -147123942 + L1PA11 LINE L1 5049 5343 -831 1991 107 0 26 chr3 80400636 80400908 -147123670 + AluSg SINE Alu 1 265 -45 5881 112 26 8 chr3 80400908 80401707 -147122871 + L1PA11 LINE L1 5343 6174 0 656 150 0 0 chr3 80401718 80401818 -147122760 + AluSg/x SINE Alu 196 295 -17 503 273 17 23 chr3 80402191 80402363 -147122215 + MIR SINE MIR 92 262 0 665 277 87 0 chr3 80403422 80403628 -147120950 + MER58A DNA MER1_type 1 224 0 1364 209 29 4 chr3 80403699 80403972 -147120606 + AluJo SINE Alu 3 282 -30 1033 220 63 23 chr3 80403995 80404423 -147120155 + L1MB7 LINE L1 2823 3267 -2879 7597 164 29 4 chr3 80404489 80406021 -147118557 - L1 LINE L1 -981 5165 3595 498 160 85 0 chr3 80406020 80406126 -147118452 - L1MA6 LINE L1 -614 5686 5572 * 2878 154 43 27 chr3 80406136 80406222 -147118356 + L1MA6 LINE L1 5693 5776 -524 210 37 0 0 chr3 80406222 80406249 -147118329 + (TG)n Simple_repeat Simple_repeat 2 28 0 2878 154 43 27 chr3 80406249 80406760 -147117818 + L1MA6 LINE L1 5776 6300 0 3971 175 36 14 chr3 80406762 80407863 -147116715 + L1MB7 LINE L1 5045 6166 -18 930 227 64 78 chr3 80408018 80408300 -147116278 + L1MD1 LINE L1 12 289 -6251 * 1361 233 76 29 chr3 80408285 80408562 -147116016 + L1MD1 LINE L1 3902 4165 -2588 2018 124 0 20 chr3 80408562 80408861 -147115717 + AluSx SINE Alu 17 309 -3 1361 233 76 29 chr3 80408861 80410677 -147113901 + L1MD1 LINE L1 4165 6271 -482 573 229 61 78 chr3 80410680 80410973 -147113605 + L1MD1 LINE L1 6342 6629 -7 217 280 47 51 chr3 80411618 80411739 -147112839 + MIR SINE MIR 20 142 -66 685 213 69 40 chr3 80412254 80412456 -147112122 - MER74B LTR ERVL -67 555 348 180 0 0 0 chr3 80412472 80412492 -147112086 + (A)n Simple_repeat Simple_repeat 1 20 0 1080 213 16 8 chr3 80412497 80412746 -147111832 - MER82 DNA MER2_type -377 276 26 807 193 11 17 chr3 80412761 80412937 -147111641 + L1MC/D LINE L1 5495 5669 -690 1796 225 68 20 chr3 80412958 80413629 -147110949 - L1MDb LINE L1 -4920 1620 940 645 316 33 35 chr3 80414019 80414386 -147110192 - L1MDb LINE L1 -6116 424 59 235 303 97 13 chr3 80414437 80414592 -147109986 - L1ME LINE L1 -370 5751 5584 22217 175 32 18 chr3 80414766 80421144 -147103434 - L1PA11 LINE L1 -3 6486 10 226 314 75 0 chr3 80421154 80421342 -147103236 - L1ME LINE L1 -818 5328 5127 192 143 0 0 chr3 80423081 80423123 -147101455 + (TA)n Simple_repeat Simple_repeat 2 43 0 209 263 0 18 chr3 80425077 80425134 -147099444 + L2 LINE L2 3183 3238 -75 330 250 102 46 chr3 80425661 80425723 -147098855 - L2 LINE L2 -58 3255 3198 1492 214 27 18 chr3 80425723 80426060 -147098518 - MER58B DNA MER1_type 0 341 2 330 250 102 46 chr3 80426060 80426213 -147098365 - L2 LINE L2 -115 3198 3028 446 216 40 32 chr3 80426291 80426416 -147098162 - L2 LINE L2 -794 2520 2395 394 277 106 21 chr3 80426422 80426563 -147098015 + MIR SINE MIR 109 261 -1 329 295 25 57 chr3 80427165 80427314 -147097264 + MER5A DNA MER1_type 2 147 -31 1085 168 59 5 chr3 80427557 80427760 -147096818 - MER20 DNA MER1_type -4 215 2 23 54 0 0 chr3 80428849 80428886 -147095692 + AT_rich Low_complexity Low_complexity 1 37 0 22 35 0 0 chr3 80429376 80429405 -147095173 + AT_rich Low_complexity Low_complexity 1 29 0 180 305 8 78 chr3 80429975 80430103 -147094475 - L2 LINE L2 -279 2993 2875 3164 138 68 7 chr3 80431187 80431780 -147092798 + L1PB4 LINE L1 5471 6099 -57 326 303 143 30 chr3 80431835 80432066 -147092512 + MIR SINE MIR 4 260 -2 4220 179 95 12 chr3 80432271 80433303 -147091275 - L1 LINE L1 -753 5393 4276 2078 187 81 21 chr3 80433290 80433329 -147091249 + L1 LINE L1 3540 3575 -2571 * 2204 108 10 3 chr3 80433329 80433635 -147090943 + AluY SINE Alu 1 308 -3 2078 187 81 21 chr3 80433635 80434210 -147090368 + L1 LINE L1 3575 4241 -1905 371 295 13 110 chr3 80434306 80434396 -147090182 - MIR SINE MIR -26 236 139 738 122 54 34 chr3 80434396 80434544 -147090034 + L1PB1 LINE L1 6000 6150 -1 371 295 13 110 chr3 80434544 80434690 -147089888 - MIR SINE MIR -123 139 23 2229 129 0 0 chr3 80435109 80435411 -147089167 + AluSx SINE Alu 1 302 -10 23 0 0 0 chr3 80436571 80436594 -147087984 + AT_rich Low_complexity Low_complexity 1 23 0 1621 211 105 69 chr3 80437667 80438202 -147086376 + MLT2B3 LTR ERVL 1 554 0 876 216 101 0 chr3 80438667 80438866 -147085712 - MER20 DNA MER1_type 0 219 1 2449 107 16 14 chr3 80439089 80439452 -147085126 + THE1B LTR MaLR 1 364 0 203 304 96 48 chr3 80439908 80440033 -147084545 + L2 LINE L2 3137 3267 -5 2237 80 0 13 chr3 80440276 80440576 -147084002 + AluSc SINE Alu 1 296 -13 323 321 85 0 chr3 80441452 80441558 -147083020 - L2 LINE L2 -5 3267 3153 360 160 0 53 chr3 80441651 80441726 -147082852 - MER33 DNA MER1_type -247 77 7 865 201 0 0 chr3 80441966 80442110 -147082468 + FRAM SINE Alu 1 144 -32 245 175 35 0 chr3 80442131 80442188 -147082390 + L1ME LINE L1 5761 5819 -302 410 276 169 35 chr3 80442997 80443258 -147081320 - L2 LINE L2 -481 2833 2538 974 256 67 16 chr3 80443412 80443728 -147080850 + MER46C DNA MER2_type 2 333 -5 813 218 113 116 chr3 80445033 80445150 -147079428 + MLT1E2 LTR MaLR 1 117 -509 2261 133 0 0 chr3 80445150 80445451 -147079127 - AluSx SINE Alu -11 301 1 813 218 113 116 chr3 80445451 80445803 -147078775 + MLT1E2 LTR MaLR 117 574 -52 3303 214 194 14 chr3 80445834 80447019 -147077559 - L1MC4 LINE L1 -69 7973 6470 585 278 127 4 chr3 80447317 80447576 -147077002 + MLT1F LTR MaLR 1 291 -251 1151 216 188 36 chr3 80447601 80448022 -147076556 + MLT1F LTR MaLR 58 542 0 1506 196 42 50 chr3 80448883 80449260 -147075318 - MLT1A2 LTR MaLR 0 374 1 406 301 50 50 chr3 80449531 80449552 -147075026 - MIR SINE MIR -13 249 229 518 235 71 24 chr3 80449552 80449722 -147074856 + MER104 DNA MER2_type 3 180 0 406 301 50 50 chr3 80449722 80449899 -147074679 - MIR SINE MIR -32 230 51 2561 94 5 32 chr3 80450098 80450472 -147074106 + THE1B LTR MaLR 1 364 0 2276 186 11 60 chr3 80450653 80451200 -147073378 - MLT2B1 LTR ERVL 0 520 1 205 288 0 0 chr3 80451730 80451789 -147072789 - L2 LINE L2 -4 3268 3210 275 207 98 37 chr3 80452700 80452782 -147071796 - L2 LINE L2 -13 3259 3173 184 299 71 63 chr3 80453080 80453207 -147071371 - L2 LINE L2 -4 3309 3182 1445 262 178 30 chr3 80453328 80453973 -147070605 - L2 LINE L2 -426 2888 2148 430 331 77 28 chr3 80453996 80454334 -147070244 - L2 LINE L2 -1406 1908 1506 1810 152 4 0 chr3 80454572 80454848 -147069730 + AluSx SINE Alu 1 277 -35 225 0 0 0 chr3 80455685 80455710 -147068868 + (CA)n Simple_repeat Simple_repeat 2 26 0 1122 193 46 95 chr3 80455858 80456268 -147068310 + MLT1B LTR MaLR 1 390 0 405 268 40 81 chr3 80457432 80457630 -147066948 + HAL1 LINE L1 4 193 -2314 310 224 48 109 chr3 80457822 80457969 -147066609 + HAL1 LINE L1 860 997 -1510 180 208 125 0 chr3 80457987 80458035 -147066543 - MIR SINE MIR -21 241 188 618 279 95 63 chr3 80458395 80458879 -147065699 + HAL1 LINE L1 1154 1664 -843 784 92 0 0 chr3 80458879 80458988 -147065590 - L1PB3 LINE L1 0 6154 6046 618 279 95 63 chr3 80458988 80459134 -147065444 + HAL1 LINE L1 1664 1804 -703 21 0 0 0 chr3 80459392 80459413 -147065165 + AT_rich Low_complexity Low_complexity 1 21 0 213 181 0 60 chr3 80459582 80459665 -147064913 + (CATATA)n Simple_repeat Simple_repeat 3 80 0 4222 132 40 6 chr3 80459884 80460837 -147063741 + L1MA6 LINE L1 5095 6080 -220 2048 124 119 8 chr3 80460837 80461313 -147063265 + MER1A DNA MER1_type 1 529 0 919 171 0 6 chr3 80461417 80461587 -147062991 + L1MA6 LINE L1 6132 6300 0 195 349 0 0 chr3 80461670 80461733 -147062845 + L2 LINE L2 3187 3249 -64 201 171 0 0 chr3 80462334 80462369 -147062209 + A-rich Low_complexity Low_complexity 6 40 0 389 265 39 0 chr3 80462404 80462506 -147062072 + Charlie2 DNA MER1_type 6 111 -2751 3572 162 48 50 chr3 80462618 80463404 -147061174 + LTR1 LTR ERV1 1 785 0 1932 173 62 16 chr3 80464123 80464493 -147060085 + MLT2B3 LTR ERVL 1 387 -167 337 173 12 37 chr3 80464482 80464563 -147060015 + MER21B LTR ERV1 126 204 -659 * 840 114 87 0 chr3 80464587 80464698 -147059880 + MLT2B3 LTR ERVL 392 521 -33 360 94 0 0 chr3 80464698 80464751 -147059827 + (TCCA)n Simple_repeat Simple_repeat 2 54 0 840 114 87 0 chr3 80464751 80464788 -147059790 + MLT2B3 LTR ERVL 521 553 -1 514 232 128 18 chr3 80465006 80465170 -147059408 - MER21B LTR ERV1 -216 647 466 21 0 0 0 chr3 80465383 80465404 -147059174 + AT_rich Low_complexity Low_complexity 1 21 0 420 261 7 78 chr3 80465434 80465587 -147058991 + MER5A DNA MER1_type 43 184 -5 360 228 33 11 chr3 80465765 80465857 -147058721 - MER5A DNA MER1_type -83 106 13 1132 215 5 14 chr3 80465880 80466103 -147058475 - MER58A DNA MER1_type -3 221 1 487 273 16 0 chr3 80466387 80466508 -147058070 + L2 LINE L2 3188 3310 -3 1383 272 126 37 chr3 80467643 80468561 -147056017 - L2 LINE L2 -1 3312 2258 2420 54 0 0 chr3 80469465 80469782 -147054796 - L1PA4 LINE L1 -65 6090 5774 24428 115 16 14 chr3 80470084 80474072 -147050506 + L1PA7 LINE L1 11 4005 -2141 2140 81 0 3 chr3 80474073 80474383 -147050195 - L1P LINE L1 -1221 4925 4617 9965 74 5 0 chr3 80474399 80476517 -147048061 + L1PA7 LINE L1 4021 6149 -5 256 284 93 71 chr3 80476768 80476817 -147047761 - MIR SINE MIR -57 205 159 2310 80 3 3 chr3 80476817 80477116 -147047462 - AluY SINE Alu -12 299 1 256 284 93 71 chr3 80477116 80477249 -147047329 - MIR SINE MIR -103 159 19 751 56 28 0 chr3 80477910 80478017 -147046561 - L1PA10 LINE L1 -441 5727 5618 2897 103 21 2 chr3 80478017 80478436 -147046142 + L1PA10 LINE L1 5731 6166 -2 247 316 58 58 chr3 80478546 80478685 -147045893 + MIR SINE MIR 10 148 -114 2106 194 47 23 chr3 80478740 80479225 -147045353 + MLT1D LTR MaLR 1 497 -8 1398 165 59 108 chr3 80479360 80479601 -147044977 - Charlie4a DNA MER1_type -1455 506 300 2767 83 3 3 chr3 80479601 80479968 -147044610 + L1PA10 LINE L1 5796 6167 -1 1398 165 59 108 chr3 80479968 80480218 -147044360 - Charlie4a DNA MER1_type -1661 300 39 1598 203 7 10 chr3 80480636 80480941 -147043637 + AluJb SINE Alu 1 304 -8 1563 27 0 6 chr3 80481795 80481978 -147042600 + AluY SINE Alu 35 216 -95 1013 171 28 28 chr3 80482088 80482269 -147042309 - AluJb SINE Alu -131 181 1 4275 148 63 11 chr3 80482269 80483150 -147041428 - L1MA8 LINE L1 -166 6125 5196 2460 173 52 6 chr3 80483150 80483317 -147041261 + L1 LINE L1 3987 4145 -2001 13972 130 40 11 chr3 80483317 80483366 -147041212 + Tigger1 DNA MER2_type 1 47 -2371 1757 174 10 13 chr3 80483366 80483677 -147040901 - AluSx SINE Alu -2 310 1 13972 130 40 11 chr3 80483677 80485976 -147038602 + Tigger1 DNA MER2_type 47 2418 0 2460 173 52 6 chr3 80485976 80486345 -147038233 + L1 LINE L1 4145 4548 -1598 * 25540 38 4 0 chr3 80486340 80490408 -147034170 - L1PA4 LINE L1 -1 6154 2071 2034 121 24 0 chr3 80491083 80491372 -147033206 + AluSx SINE Alu 1 296 -16 291 273 87 50 chr3 80491418 80491579 -147032999 - MIR SINE MIR -50 212 46 727 167 81 14 chr3 80491826 80492047 -147032531 + Charlie5 DNA MER1_type 2295 2530 -82 1530 152 50 57 chr3 80492670 80493025 -147031553 + AluSx SINE Alu 1 353 0 609 337 87 40 chr3 80493117 80493464 -147031114 + L2 LINE L2 2910 3272 0 367 257 69 20 chr3 80494097 80494198 -147030380 - MIR SINE MIR -63 145 40 723 244 34 19 chr3 80494215 80494420 -147030158 - MER3 DNA MER1_type 0 209 2 261 286 92 0 chr3 80494579 80494672 -147029906 + MIR3 SINE MIR 92 174 -34 714 263 91 13 chr3 80494752 80494984 -147029594 - MIR SINE MIR -12 250 1 1862 181 0 0 chr3 80495088 80495381 -147029197 - AluJb SINE Alu -19 293 1 1550 211 50 40 chr3 80495960 80496361 -147028217 + Charlie4a DNA MER1_type 3 411 -1550 662 137 0 0 chr3 80496361 80496463 -147028115 - L1PA15 LINE L1 -6 6159 6058 1550 211 50 40 chr3 80496463 80496559 -147028019 + Charlie4a DNA MER1_type 411 505 -3 590 290 161 24 chr3 80497763 80497864 -147026714 - L2 LINE L2 0 3313 3227 2124 88 9 50 chr3 80497864 80498181 -147026397 - AluSc SINE Alu -5 304 1 590 290 161 24 chr3 80498181 80498420 -147026158 - L2 LINE L2 -86 3227 2926 561 291 157 14 chr3 80499114 80499324 -147025254 - MIR SINE MIR -9 253 14 1994 149 0 7 chr3 80499461 80499770 -147024808 + AluJb SINE Alu 1 307 -5 651 353 66 28 chr3 80500498 80500920 -147023658 + L3 LINE CR1 151 588 -989 407 266 18 9 chr3 80500940 80501049 -147023529 - MIR SINE MIR -139 123 14 973 337 64 52 chr3 80501078 80501635 -147022943 + L3 LINE CR1 594 1164 -413 720 264 40 0 chr3 80501635 80501836 -147022742 + MER3 DNA MER1_type 1 209 0 973 337 64 52 chr3 80501836 80502026 -147022552 + L3 LINE CR1 1164 1350 -227 422 241 71 27 chr3 80502073 80502185 -147022393 + L2 LINE L2 3156 3272 0 343 284 53 71 chr3 80502210 80502379 -147022199 + L3 LINE CR1 1394 1559 -18 285 235 108 20 chr3 80502412 80502446 -147022132 + MIR SINE MIR 48 78 -184 2054 254 47 21 chr3 80502446 80503024 -147021554 - MLT1E LTR MaLR 0 593 1 285 235 108 20 chr3 80503024 80503091 -147021487 + MIR SINE MIR 78 158 -104 1103 218 5 14 chr3 80503411 80503631 -147020947 + MER58A DNA MER1_type 4 221 -3 360 228 33 11 chr3 80503654 80503746 -147020832 + MER5A DNA MER1_type 13 106 -83 459 282 11 64 chr3 80503924 80504112 -147020466 - MER5A DNA MER1_type -5 184 7 1299 80 38 115 chr3 80504316 80504554 -147020024 - L1MA8 LINE L1 -1 6290 6076 502 101 13 0 chr3 80504554 80504633 -147019945 - MADE1 DNA Mariner 0 80 1 1299 80 38 115 chr3 80504633 80504682 -147019896 - L1MA8 LINE L1 -215 6076 6025 673 205 125 93 chr3 80504926 80504985 -147019593 - L2 LINE L2 -2 3311 3255 867 265 14 0 chr3 80504985 80505196 -147019382 - MER58C DNA MER1_type 0 215 2 673 205 125 93 chr3 80505196 80505249 -147019329 - L2 LINE L2 -58 3255 3205 2107 131 0 3 chr3 80505249 80505555 -147019023 + AluJb SINE Alu 2 306 -6 673 205 125 93 chr3 80505555 80505753 -147018825 - L2 LINE L2 -108 3205 2990 192 158 0 0 chr3 80506620 80506658 -147017920 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 1473 197 0 31 chr3 80506661 80506950 -147017628 - AluJb SINE Alu -32 280 1 2621 11 0 0 chr3 80507498 80507785 -147016793 + AluYa5 SINE Alu 24 310 -1 29285 103 14 21 chr3 80507994 80514148 -147010430 - L1PA7 LINE L1 -1 6468 253 502 272 219 0 chr3 80514465 80514634 -147009944 - MIR SINE MIR -53 209 4 1224 251 91 46 chr3 80515650 80516168 -147008410 + MLT1H1 LTR MaLR 1 541 -14 557 124 18 26 chr3 80516341 80516454 -147008124 - L1MA9 LINE L1 0 6312 6201 436 269 69 7 chr3 80516696 80516841 -147007737 - L2 LINE L2 -1 3312 3159 2089 125 37 7 chr3 80516858 80517420 -147007158 - L1PA10 LINE L1 -547 5621 5050 3756 78 40 0 chr3 80517420 80517923 -147006655 + L1PA10 LINE L1 5637 6159 -9 576 264 29 6 chr3 80518336 80518510 -147006068 - MER5A DNA MER1_type -10 179 2 296 281 97 26 chr3 80520149 80520263 -147004315 + MIR SINE MIR 4 125 -137 571 308 186 21 chr3 80520352 80520865 -147003713 - L2 LINE L2 0 3313 2715 349 279 34 43 chr3 80521865 80522073 -147002505 + L1MC4a LINE L1 5704 5909 -1899 214 310 88 35 chr3 80523307 80523478 -147001100 + MIR SINE MIR 56 235 -27 695 239 45 73 chr3 80524268 80524307 -147000271 - MIR SINE MIR -18 244 205 306 0 0 0 chr3 80524307 80524341 -147000237 + (TG)n Simple_repeat Simple_repeat 2 35 0 695 239 45 73 chr3 80524341 80524548 -147000030 - MIR SINE MIR -57 205 5 334 243 50 57 chr3 80524813 80524953 -146999625 - Charlie8 DNA MER1_type -2278 139 1 342 327 15 59 chr3 80526672 80526874 -146997704 + L1ME LINE L1 5522 5714 -450 374 221 11 11 chr3 80527979 80528074 -146996504 - Charlie4 DNA MER1_type -45 1916 1822 234 0 0 0 chr3 80528585 80528611 -146995967 + (CA)n Simple_repeat Simple_repeat 1 26 0 1629 171 0 37 chr3 80528681 80529002 -146995576 + AluJo SINE Alu 1 309 -3 2787 209 42 40 chr3 80529668 80530858 -146993720 + L1ME1 LINE L1 4974 6159 -7 447 133 89 0 chr3 80530896 80530986 -146993592 + L1M3f LINE L1 18 115 -5213 762 207 6 45 chr3 80530986 80531039 -146993539 - FAM SINE Alu -139 46 128 2373 137 6 6 chr3 80531039 80531403 -146993175 + THE1B LTR MaLR 1 364 0 762 207 6 45 chr3 80531403 80531528 -146993050 - FAM SINE Alu -56 129 1 4132 249 35 21 chr3 80531533 80533020 -146991558 + L1M3f LINE L1 110 1611 -4067 10041 211 45 15 chr3 80533145 80537545 -146987033 + L1MA4 LINE L1 473 5035 -1293 3488 50 7 7 chr3 80537547 80537989 -146986589 - L1PA8 LINE L1 -1 6171 5730 2173 50 0 0 chr3 80537990 80538269 -146986309 + L1PA8 LINE L1 5447 5725 -447 * 5783 156 22 6 chr3 80538255 80539680 -146984898 + L1MA4 LINE L1 5022 6477 -5 577 297 36 5 chr3 80539691 80539886 -146984692 - MIR SINE MIR -28 234 34 500 84 12 0 chr3 80540274 80540357 -146984221 + (CA)n Simple_repeat Simple_repeat 2 85 0 225 0 0 0 chr3 80541763 80541788 -146982790 + (CA)n Simple_repeat Simple_repeat 2 26 0 255 301 41 62 chr3 80542234 80542380 -146982198 - MER5B DNA MER1_type 0 178 36 203 263 0 26 chr3 80542898 80542974 -146981604 + GA-rich Low_complexity Low_complexity 2 75 0 324 106 0 0 chr3 80543082 80543129 -146981449 + Charlie5 DNA MER1_type 18 64 -2548 619 169 23 0 chr3 80543129 80543259 -146981319 + Charlie5 DNA MER1_type 2426 2558 -54 488 267 61 36 chr3 80543817 80543982 -146980596 - MIR SINE MIR -4 258 90 370 149 45 0 chr3 80543989 80544056 -146980522 + LTR40c LTR ERVL 302 371 -94 2134 111 0 0 chr3 80544057 80544345 -146980233 + AluSx SINE Alu 1 288 -24 783 122 0 8 chr3 80544368 80544491 -146980087 + LTR40b LTR ERVL 341 462 0 573 295 79 11 chr3 80544834 80545024 -146979554 - MIR SINE MIR -3 259 57 246 32 0 0 chr3 80547037 80547068 -146977510 + (CA)n Simple_repeat Simple_repeat 2 32 0 236 157 39 0 chr3 80549140 80549191 -146975387 + MLT1E3 LTR MaLR 569 621 -3 466 211 111 86 chr3 80549244 80549524 -146975054 + MER102b DNA MER1_type 10 296 -45 413 154 128 0 chr3 80549948 80550026 -146974552 + 5S rRNA rRNA 2 89 -32 * 1452 215 108 56 chr3 80550024 80550545 -146974033 - MLT1E1 LTR MaLR -43 611 64 827 199 12 6 chr3 80550767 80550921 -146973657 + FRAM SINE Alu 1 158 -154 249 57 0 0 chr3 80550921 80550956 -146973622 + (CAGG)n Simple_repeat Simple_repeat 2 36 0 827 199 12 6 chr3 80550956 80550972 -146973606 + FRAM SINE Alu 158 172 -4 271 299 11 0 chr3 80550977 80551064 -146973514 + L1ME LINE L1 5739 5826 -295 440 263 87 53 chr3 80551140 80551497 -146973081 + LTR33A LTR ERVL 2 370 -153 492 137 105 0 chr3 80553752 80553847 -146970731 - MSTD LTR MaLR 0 396 292 292 143 71 0 chr3 80553850 80553906 -146970672 - MSTC LTR MaLR -368 60 1 5449 236 98 34 chr3 80553906 80555535 -146969043 - MSTD-int LTR MaLR 0 1735 2 1552 213 47 21 chr3 80555537 80555918 -146968660 - MSTD LTR MaLR 0 396 6 992 190 22 183 chr3 80556657 80557324 -146967254 + L1MC4 LINE L1 7480 8039 -3 198 281 18 0 chr3 80557486 80557543 -146967035 - L2 LINE L2 -5 3267 3210 393 269 32 0 chr3 80557592 80557685 -146966893 - MIR SINE MIR -143 119 24 687 224 6 0 chr3 80559409 80559570 -146965008 + L1PB4 LINE L1 5995 6156 0 274 296 78 0 chr3 80560335 80560450 -146964128 + L2 LINE L2 3190 3313 0 336 300 0 0 chr3 80560485 80560575 -146964003 + MIR3 SINE MIR 100 189 -19 1807 154 31 3 chr3 80561139 80561431 -146963147 - AluJb SINE Alu -12 300 1 1961 128 3 17 chr3 80561821 80562001 -146962577 - AluSq SINE Alu 0 314 138 2085 87 72 0 chr3 80562001 80562278 -146962300 - AluSx SINE Alu -15 297 1 1961 128 3 17 chr3 80562278 80562415 -146962163 - AluSq SINE Alu -176 138 1 981 280 75 48 chr3 80562664 80563384 -146961194 - L2 LINE L2 -4 3309 2570 228 254 56 14 chr3 80563400 80563471 -146961107 + L2 LINE L2 3199 3272 0 268 307 26 20 chr3 80564298 80564451 -146960127 + L1 LINE L1 4904 5057 -1089 25 0 0 0 chr3 80564566 80564591 -146959987 + AT_rich Low_complexity Low_complexity 1 25 0 288 250 97 21 chr3 80564615 80564759 -146959819 + L1MCc LINE L1 22 176 -6247 409 162 76 86 chr3 80564870 80564975 -146959603 + L1MCc LINE L1 335 438 -5985 1212 261 94 22 chr3 80565108 80565660 -146958918 + L1MCc LINE L1 785 1384 -5038 1739 293 44 6 chr3 80565744 80566657 -146957921 + L1MCc LINE L1 2800 3741 -3200 568 265 177 19 chr3 80566663 80567036 -146957542 + L1MC/D LINE L1 1633 2064 -4332 748 225 10 38 chr3 80567037 80567246 -146957332 + MER3 DNA MER1_type 2 204 -5 3649 249 65 18 chr3 80567248 80567408 -146957170 + L1MC/D LINE L1 2054 2205 -4010 1597 187 84 0 chr3 80567408 80567729 -146956849 + MER7A DNA MER2_type 1 346 0 3649 249 65 18 chr3 80567729 80568160 -146956418 + L1MC/D LINE L1 2205 2615 -3600 2227 110 47 49 chr3 80568160 80568525 -146956053 + THE1B LTR MaLR 1 364 0 11476 94 15 1 chr3 80568526 80570083 -146954495 + THE1B-int LTR MaLR 2 1580 0 1985 133 53 44 chr3 80570083 80570444 -146954134 + THE1B LTR MaLR 1 364 0 3649 249 65 18 chr3 80570444 80571574 -146953004 + L1MC/D LINE L1 2614 3824 -2391 2316 169 31 18 chr3 80571577 80572589 -146951989 + L1MB5 LINE L1 5014 6136 -38 1489 227 112 9 chr3 80572607 80573070 -146951508 + L1MC/D LINE L1 3807 4317 -1898 583 122 35 0 chr3 80573376 80573491 -146951087 + GA-rich Low_complexity Low_complexity 4 122 0 292 244 0 0 chr3 80573780 80573866 -146950712 + L1MC/D LINE L1 5421 5506 -2371 4922 98 119 128 chr3 80573981 80575543 -146949035 - pTR5 LTR ERV1 0 2438 743 674 255 37 0 chr3 80575577 80575765 -146948813 + L1MC/D LINE L1 5669 5863 -2014 565 96 0 0 chr3 80575897 80575980 -146948598 + L1PA10 LINE L1 6086 6168 0 834 200 0 76 chr3 80576022 80576207 -146948371 + FAM SINE Alu 1 171 -4 288 318 0 0 chr3 80576319 80576407 -146948171 + MIR SINE MIR 113 200 -62 271 339 88 0 chr3 80577553 80577724 -146946854 + Charlie8 DNA MER1_type 11 196 -2221 779 266 79 4 chr3 80577914 80578143 -146946435 + L2 LINE L2 2831 3076 -237 783 157 10 71 chr3 80578146 80578320 -146946258 - L1 LINE L1 -968 5178 5016 1598 171 38 21 chr3 80578320 80578483 -146946095 - AluJo SINE Alu -20 292 120 216 0 0 0 chr3 80578483 80578507 -146946071 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1598 171 38 21 chr3 80578507 80578630 -146945948 - AluJo SINE Alu -192 120 1 783 157 10 71 chr3 80578630 80578653 -146945925 - L1 LINE L1 -1130 5016 4993 2370 81 7 0 chr3 80578654 80578950 -146945628 + AluY SINE Alu 1 298 -13 313 276 55 16 chr3 80578958 80579085 -146945493 - L1 LINE L1 -1259 4887 4756 1207 123 0 15 chr3 80579086 80579281 -146945297 + L1MA9 LINE L1 6116 6307 -5 500 261 108 25 chr3 80579285 80579488 -146945090 + L2 LINE L2 3093 3312 -1 1233 251 64 24 chr3 80579576 80580201 -146944377 + L1MCa LINE L1 1776 2483 -3943 1341 211 144 22 chr3 80580863 80581279 -146943299 + MLT1C LTR MaLR 1 467 0 310 302 23 0 chr3 80582114 80582200 -146942378 - MER5B DNA MER1_type -86 92 5 354 23 0 0 chr3 80584704 80584747 -146939831 + (CA)n Simple_repeat Simple_repeat 2 44 0 543 294 72 74 chr3 80584969 80585401 -146939177 + MLT1K LTR MaLR 5 435 -153 2689 112 47 2 chr3 80585422 80585849 -146938729 - L1M1 LINE L1 -5440 2125 1680 4244 170 35 30 chr3 80586192 80587034 -146937544 + L1MB3 LINE L1 4986 5839 -344 2283 109 0 0 chr3 80587034 80587336 -146937242 + AluY SINE Alu 1 302 -9 4244 170 35 30 chr3 80587336 80587676 -146936902 + L1MB3 LINE L1 5839 6176 -7 2793 179 20 51 chr3 80587700 80588347 -146936231 + Looper DNA T2_type 768 1394 -164 405 128 116 0 chr3 80588347 80588433 -146936145 - L1MB7 LINE L1 -7 6177 6082 2793 179 20 51 chr3 80588433 80588477 -146936101 + Looper DNA T2_type 1394 1438 -120 188 180 40 60 chr3 80588727 80588777 -146935801 - L2 LINE L2 -541 2773 2725 1122 219 63 42 chr3 80588788 80588873 -146935705 + MLT1D LTR MaLR 1 83 -422 1803 171 67 6 chr3 80588873 80589217 -146935361 - MLT1A1 LTR MaLR 0 365 1 1122 219 63 42 chr3 80589217 80589464 -146935114 + MLT1D LTR MaLR 83 340 -165 * 3430 136 16 0 chr3 80589458 80589974 -146934604 + MER1A DNA MER1_type 6 529 0 517 174 52 2 chr3 80589974 80590098 -146934480 + MLT1D LTR MaLR 324 505 0 231 336 18 9 chr3 80590187 80590300 -146934278 - MIR3 SINE MIR -3 205 92 471 271 101 20 chr3 80591341 80591540 -146933038 - MER58C DNA MER1_type 0 215 1 2140 113 58 0 chr3 80593497 80593790 -146930788 - AluSx SINE Alu -2 310 1 7654 34 0 1 chr3 80593974 80595668 -146928910 + L1PA4 LINE L1 4463 6152 -3 29 0 0 0 chr3 80595698 80595727 -146928851 + AT_rich Low_complexity Low_complexity 1 29 0 273 233 58 97 chr3 80596262 80596288 -146928290 - L2 LINE L2 -3 3310 3285 1208 210 88 37 chr3 80596288 80596640 -146927938 + MLT1A2 LTR MaLR 5 374 0 273 233 58 97 chr3 80596640 80596716 -146927862 - L2 LINE L2 -28 3285 3212 1483 268 99 23 chr3 80597101 80597829 -146926749 + MER20B DNA MER1_type 1 783 -1 1053 293 34 6 chr3 80598438 80598762 -146925816 - MLT1I LTR MaLR -5 404 72 2981 151 28 55 chr3 80599205 80599895 -146924683 - L1 LINE L1 -942 5204 4534 253 30 0 0 chr3 80599893 80599926 -146924652 - L1P LINE L1 -6107 39 7 * 12332 75 1 1 chr3 80599921 80601608 -146922970 + L1P LINE L1 33 1718 -4428 362 159 18 0 chr3 80651608 80651690 -146872888 - AluS SINE Alu -232 70 1 24 32 0 0 chr3 80651807 80651838 -146872740 + AT_rich Low_complexity Low_complexity 1 31 0 2090 111 14 4 chr3 80651902 80652181 -146872397 + AluSq SINE Alu 1 282 -31 1726 145 0 77 chr3 80652214 80652538 -146872040 - AluJo SINE Alu -13 299 1 186 103 0 0 chr3 80652744 80652773 -146871805 + (T)n Simple_repeat Simple_repeat 1 29 0 2068 144 3 0 chr3 80654111 80654417 -146870161 - AluJb SINE Alu -4 308 2 260 317 201 15 chr3 80654701 80654900 -146869678 + MIR SINE MIR 3 238 -24 21 57 0 0 chr3 80655581 80655616 -146868962 + GC_rich Low_complexity Low_complexity 1 35 0 208 200 27 0 chr3 80656025 80656100 -146868478 + (CGGGG)n Simple_repeat Simple_repeat 5 81 0 243 293 133 0 chr3 80656986 80657061 -146867517 + MER5A DNA MER1_type 2 86 -103 321 206 0 16 chr3 80657587 80657650 -146866928 - MIR3 SINE MIR -36 172 111 866 168 0 0 chr3 80657985 80658116 -146866462 + FLAM_A SINE Alu 1 131 -2 22 0 0 0 chr3 80658244 80658266 -146866312 + AT_rich Low_complexity Low_complexity 1 22 0 210 71 0 0 chr3 80658827 80658855 -146865723 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 421 292 73 8 chr3 80659116 80659286 -146865292 - MIR SINE MIR -48 214 36 2039 100 82 0 chr3 80662360 80662639 -146861939 - AluSg SINE Alu -8 302 1 1723 170 34 0 chr3 80662658 80662952 -146861626 - AluJo SINE Alu -8 304 1 21 0 0 0 chr3 80663114 80663135 -146861443 + AT_rich Low_complexity Low_complexity 1 21 0 401 293 134 0 chr3 80663600 80663764 -146860814 - MIR SINE MIR 0 262 77 195 349 45 23 chr3 80663880 80664012 -146860566 + L3 LINE CR1 372 506 -1071 517 290 161 0 chr3 80664628 80664783 -146859795 + MER5A DNA MER1_type 10 189 0 817 148 16 0 chr3 80665179 80665301 -146859277 + FLAM_C SINE Alu 14 137 -6 269 300 110 10 chr3 80665968 80666068 -146858510 - L2 LINE L2 0 3272 3163 345 160 67 27 chr3 80666311 80666386 -146858192 - L2 LINE L2 -5 3267 3190 1793 157 0 10 chr3 80666559 80666853 -146857725 + AluSx SINE Alu 1 291 -21 253 103 0 0 chr3 80666908 80666947 -146857631 + L1MC4 LINE L1 6665 6703 -1339 1795 135 4 15 chr3 80666952 80667226 -146857352 - AluJb SINE Alu -26 286 16 180 0 0 0 chr3 80667299 80667319 -146857259 + (T)n Simple_repeat Simple_repeat 1 20 0 1150 148 11 0 chr3 80668113 80668295 -146856283 - AluSg/x SINE Alu -9 303 120 1199 127 0 6 chr3 80668298 80668464 -146856114 - AluSx SINE Alu -147 165 1 22 0 0 0 chr3 80668464 80668486 -146856092 + AT_rich Low_complexity Low_complexity 1 22 0 345 207 23 46 chr3 80668560 80668647 -146855931 + L1MC5 LINE L1 7817 7901 -60 1974 120 7 0 chr3 80669159 80669435 -146855143 + AluSx SINE Alu 35 312 0 800 228 28 39 chr3 80669435 80669615 -146854963 + AluJb SINE Alu 122 299 -13 406 268 128 50 chr3 80669830 80670009 -146854569 - MER91A DNA MER1_type -3 193 1 204 383 12 0 chr3 80670014 80670095 -146854483 - L2 LINE L2 -482 2832 2751 282 317 171 0 chr3 80670404 80670527 -146854051 + MIR3 SINE MIR 54 197 -11 223 267 50 0 chr3 80670819 80670879 -146853699 + MIR3 SINE MIR 109 171 -37 38 51 0 0 chr3 80671005 80671064 -146853514 + AT_rich Low_complexity Low_complexity 1 59 0 2070 129 17 0 chr3 80671142 80671436 -146853142 - AluSx SINE Alu -13 299 1 234 81 0 0 chr3 80671661 80671698 -146852880 + (TCTG)n Simple_repeat Simple_repeat 2 38 0 2393 96 0 0 chr3 80672239 80672542 -146852036 - AluSg SINE Alu -6 304 2 1634 162 3 62 chr3 80672804 80673112 -146851466 - AluJb SINE Alu -16 296 7 2170 112 0 35 chr3 80673715 80673882 -146850696 - AluSx SINE Alu -9 303 151 2398 86 3 3 chr3 80673882 80674186 -146850392 - AluSq SINE Alu -9 304 1 2170 112 0 35 chr3 80674186 80674331 -146850247 - AluSx SINE Alu -161 151 2 332 221 0 13 chr3 80674515 80674592 -146849986 - Charlie8 DNA MER1_type -1 2416 2341 2220 122 0 10 chr3 80674602 80674913 -146849665 + AluSx SINE Alu 1 308 -4 532 287 116 23 chr3 80674961 80675219 -146849359 - Charlie8 DNA MER1_type -2132 285 4 386 267 227 6 chr3 80675395 80675423 -146849155 + MIR SINE MIR 43 64 -198 1886 161 7 7 chr3 80675423 80675727 -146848851 - AluJb SINE Alu -8 304 1 386 267 227 6 chr3 80675727 80675870 -146848708 + MIR SINE MIR 64 252 -10 363 198 9 94 chr3 80676366 80676415 -146848163 - L2 LINE L2 -1 3312 3275 1140 184 196 8 chr3 80676415 80676665 -146847913 - AluSx SINE Alu -4 298 2 363 198 9 94 chr3 80676665 80676721 -146847857 - L2 LINE L2 -38 3275 3216 394 312 56 0 chr3 80677409 80677534 -146847044 + MIR3 SINE MIR 38 169 -39 206 350 0 39 chr3 80677583 80677686 -146846892 - MER5B DNA MER1_type -75 103 5 477 262 42 52 chr3 80677703 80677894 -146846684 + MER5A DNA MER1_type 1 189 0 1930 105 26 70 chr3 80680801 80681114 -146843464 - AluSq SINE Alu -14 299 1 2393 103 0 0 chr3 80681572 80681884 -146842694 - AluSx SINE Alu 0 312 1 592 273 41 5 chr3 80683323 80683517 -146841061 + AluY SINE Alu 95 295 -16 370 311 156 0 chr3 80683859 80683994 -146840584 + L2 LINE L2 3116 3271 -1 369 291 79 0 chr3 80684085 80684250 -146840328 + L1ME4a LINE L1 5680 5857 -264 2194 123 0 3 chr3 80684603 80684911 -146839667 - AluSx SINE Alu -5 307 1 21 0 0 0 chr3 80684950 80684971 -146839607 + AT_rich Low_complexity Low_complexity 1 21 0 1733 194 7 0 chr3 80685734 80686043 -146838535 - AluJb SINE Alu -1 311 1 848 149 0 8 chr3 80686046 80686180 -146838398 - AluJb SINE Alu -179 133 1 542 284 48 26 chr3 80687365 80687594 -146836984 + L1ME LINE L1 5534 5767 -403 2206 117 0 16 chr3 80687749 80688066 -146836512 + AluSq SINE Alu 1 312 -1 1650 120 0 0 chr3 80688071 80688288 -146836290 + AluSx SINE Alu 1 217 -95 289 157 0 0 chr3 80688288 80688339 -146836239 + AluSx SINE Alu 250 300 -1 1592 165 22 0 chr3 80688353 80688626 -146835952 + AluJo SINE Alu 1 279 -33 372 140 0 0 chr3 80688626 80688683 -146835895 + AluJ/FRAM SINE Alu 227 283 -19 1457 174 69 28 chr3 80691684 80691972 -146832606 + AluJb SINE Alu 5 304 -8 2206 127 0 0 chr3 80692554 80692862 -146831716 + AluSx SINE Alu 1 308 -4 389 260 10 0 chr3 80693653 80693757 -146830821 + MIR SINE MIR 80 184 -78 2081 92 7 0 chr3 80693784 80694066 -146830512 + AluSx SINE Alu 14 297 -15 1749 160 118 15 chr3 80695397 80695728 -146828850 + MLT1A1 LTR MaLR 1 365 0 309 234 202 0 chr3 80695840 80695964 -146828614 + Charlie8 DNA MER1_type 11 159 -2258 2265 89 0 35 chr3 80696810 80697124 -146827454 + AluSq SINE Alu 1 303 -10 386 309 141 5 chr3 80700136 80700327 -146824251 - MIR SINE MIR -1 261 45 2351 46 0 18 chr3 80700495 80700780 -146823798 - AluY SINE Alu -3 308 29 750 282 138 26 chr3 80701592 80701932 -146822646 - L2 LINE L2 -7 3306 2929 387 335 117 10 chr3 80702056 80702253 -146822325 - L2 LINE L2 -243 3070 2853 586 312 160 68 chr3 80702331 80703232 -146821346 + L3 LINE CR1 185 1002 -575 2393 148 78 10 chr3 80703232 80703630 -146820948 + MSTB LTR MaLR 2 426 0 586 312 160 68 chr3 80703630 80703781 -146820797 + L3 LINE CR1 1002 1138 -439 2096 123 3 3 chr3 80703781 80704074 -146820504 - AluSq SINE Alu -20 293 1 586 312 160 68 chr3 80704074 80704163 -146820415 + L3 LINE CR1 1138 1438 -139 707 196 16 58 chr3 80706130 80706319 -146818259 + L1MC1 LINE L1 6153 6333 0 381 196 173 0 chr3 80707868 80708001 -146816577 - L1MD3 LINE L1 -8 7987 7832 1361 180 4 0 chr3 80708092 80708320 -146816258 - AluJb SINE Alu -83 229 1 475 185 0 0 chr3 80708320 80708412 -146816166 - L1MD2 LINE L1 -402 5957 5866 * 959 183 125 7 chr3 80708393 80708729 -146815849 - L1MD2 LINE L1 -743 5403 5106 784 203 7 0 chr3 80708746 80708884 -146815694 - FAM SINE Alu -21 164 26 2223 95 40 0 chr3 80709014 80709310 -146815268 - AluSx SINE Alu -4 308 1 1692 229 73 12 chr3 80709310 80709943 -146814635 - L1MD2 LINE L1 -1118 5028 4354 285 244 16 57 chr3 80710313 80710436 -146814142 + L1ME4a LINE L1 5950 6067 -54 26 30 0 0 chr3 80710594 80710627 -146813951 + AT_rich Low_complexity Low_complexity 1 33 0 192 77 0 0 chr3 80711073 80711099 -146813479 + (A)n Simple_repeat Simple_repeat 1 26 0 2065 102 41 14 chr3 80711155 80711448 -146813130 - AluSx SINE Alu -10 302 2 180 164 29 157 chr3 80711743 80711883 -146812695 - MER5C DNA MER1_type -13 311 190 2179 133 3 0 chr3 80711896 80712205 -146812373 - AluSx SINE Alu -2 310 1 1820 141 36 16 chr3 80713216 80713522 -146811056 - AluJo SINE Alu 0 312 1 2038 268 175 30 chr3 80714914 80716205 -146808373 + L2 LINE L2 1745 3311 -2 2424 62 0 26 chr3 80716215 80716521 -146808057 - AluY SINE Alu -13 298 1 24 67 0 0 chr3 80717341 80717386 -146807192 + AT_rich Low_complexity Low_complexity 1 45 0 244 346 45 28 chr3 80717479 80717658 -146806920 + MIR SINE MIR 20 201 -61 180 77 0 0 chr3 80717979 80718005 -146806573 + (TA)n Simple_repeat Simple_repeat 2 27 0 2125 117 7 7 chr3 80718303 80718610 -146805968 - AluSx SINE Alu -5 307 1 24 32 0 0 chr3 80718740 80718771 -146805807 + AT_rich Low_complexity Low_complexity 1 31 0 2090 111 14 4 chr3 80718835 80719114 -146805464 + AluSq SINE Alu 1 282 -31 1726 145 0 77 chr3 80719147 80719471 -146805107 - AluJo SINE Alu -13 299 1 186 103 0 0 chr3 80719677 80719706 -146804872 + (T)n Simple_repeat Simple_repeat 1 29 0 2079 144 3 0 chr3 80721044 80721350 -146803228 - AluJb SINE Alu -4 308 2 271 317 201 15 chr3 80721634 80721833 -146802745 + MIR SINE MIR 3 238 -24 21 57 0 0 chr3 80722514 80722549 -146802029 + GC_rich Low_complexity Low_complexity 1 35 0 208 200 27 0 chr3 80722962 80723037 -146801541 + (CGGGG)n Simple_repeat Simple_repeat 5 81 0 249 293 133 0 chr3 80723923 80723998 -146800580 + MER5A DNA MER1_type 2 86 -103 315 206 0 16 chr3 80724524 80724587 -146799991 - MIR3 SINE MIR -36 172 111 814 168 0 0 chr3 80724922 80725053 -146799525 + FLAM_A SINE Alu 1 131 -2 22 0 0 0 chr3 80725181 80725203 -146799375 + AT_rich Low_complexity Low_complexity 1 22 0 210 71 0 0 chr3 80725764 80725792 -146798786 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 421 292 73 8 chr3 80726053 80726223 -146798355 - MIR SINE MIR -48 214 36 2044 100 82 0 chr3 80729297 80729576 -146795002 - AluSg SINE Alu -8 302 1 1739 170 34 0 chr3 80729595 80729889 -146794689 - AluJo SINE Alu -8 304 1 21 0 0 0 chr3 80730051 80730072 -146794506 + AT_rich Low_complexity Low_complexity 1 21 0 419 293 134 0 chr3 80730537 80730701 -146793877 - MIR SINE MIR 0 262 77 199 349 45 23 chr3 80730817 80730949 -146793629 + L3 LINE CR1 372 506 -1071 520 290 161 0 chr3 80731565 80731720 -146792858 + MER5A DNA MER1_type 10 189 0 814 181 0 0 chr3 80732101 80732234 -146792344 + FLAM_C SINE Alu 1 133 0 272 300 110 10 chr3 80732902 80733002 -146791576 - L2 LINE L2 0 3272 3163 344 160 67 27 chr3 80733245 80733320 -146791258 - L2 LINE L2 -5 3267 3190 1797 157 0 10 chr3 80733493 80733787 -146790791 + AluSx SINE Alu 1 291 -21 233 103 0 0 chr3 80733842 80733881 -146790697 + L1MC4 LINE L1 6665 6703 -1339 1801 135 4 15 chr3 80733886 80734160 -146790418 - AluJb SINE Alu -26 286 16 180 0 0 0 chr3 80734233 80734253 -146790325 + (T)n Simple_repeat Simple_repeat 1 20 0 1161 148 11 0 chr3 80735047 80735229 -146789349 - AluSg/x SINE Alu -9 301 118 1205 127 0 6 chr3 80735232 80735398 -146789180 - AluSx SINE Alu -147 165 1 22 0 0 0 chr3 80735398 80735420 -146789158 + AT_rich Low_complexity Low_complexity 1 22 0 304 207 23 46 chr3 80735494 80735581 -146788997 + L1MC5 LINE L1 7817 7901 -60 1919 101 4 0 chr3 80736093 80736372 -146788206 + AluSx SINE Alu 35 314 0 259 291 142 40 chr3 80737396 80737671 -146786907 + L1MC/D LINE L1 5582 5884 -237 445 303 55 9 chr3 80737912 80738130 -146786448 + L1MC4 LINE L1 5705 5932 -1876 295 234 13 164 chr3 80738191 80738495 -146786083 + L1MC4a LINE L1 5791 6048 -1760 2316 168 30 27 chr3 80738606 80739082 -146785496 + L1M4 LINE L1 4891 5433 -751 2087 106 6 56 chr3 80739082 80739227 -146785351 + AluSc SINE Alu 1 152 -157 2292 90 0 7 chr3 80739227 80739526 -146785052 + AluSq SINE Alu 1 297 -16 2087 106 6 56 chr3 80739526 80739702 -146784876 + AluSc SINE Alu 152 306 -3 2316 168 30 27 chr3 80739702 80740046 -146784532 + L1M4 LINE L1 5433 5775 -409 1690 139 37 54 chr3 80740977 80741271 -146783307 - AluSx SINE Alu -23 289 1 1183 291 85 40 chr3 80741664 80742475 -146782103 + L1MC4 LINE L1 7163 8010 -32 2208 109 17 0 chr3 80742514 80742807 -146781771 + AluSx SINE Alu 1 298 -14 386 311 156 0 chr3 80743155 80743290 -146781288 + L2 LINE L2 3116 3271 -1 303 291 79 0 chr3 80743381 80743546 -146781032 + L1ME LINE L1 5680 5857 -264 797 186 0 14 chr3 80743923 80744068 -146780510 - AluSg/x SINE Alu -29 281 139 267 222 19 0 chr3 80744251 80744305 -146780273 - MIR SINE MIR -4 258 204 370 264 216 18 chr3 80744320 80744487 -146780091 + MIR SINE MIR 7 206 -56 2185 116 20 3 chr3 80744490 80744792 -146779786 - AluSx SINE Alu -5 307 1 424 239 22 0 chr3 80744854 80744946 -146779632 - MIR SINE MIR -143 119 26 1005 139 24 6 chr3 80745065 80745231 -146779347 + AluSg/x SINE Alu 129 297 -15 216 0 0 0 chr3 80745231 80745255 -146779323 + (TA)n Simple_repeat Simple_repeat 2 25 0 39 0 0 0 chr3 80745931 80745970 -146778608 + AT_rich Low_complexity Low_complexity 1 39 0 705 193 21 14 chr3 80745972 80746117 -146778461 - FRAM SINE Alu -30 146 1 306 319 71 50 chr3 80746152 80746491 -146778087 + L1MC/D LINE L1 4820 5165 -981 918 201 39 0 chr3 80747080 80747259 -146777319 + MER5A DNA MER1_type 3 188 -1 364 264 53 82 chr3 80748417 80748625 -146775953 - MER102a DNA MER1_type -22 308 107 2007 109 40 0 chr3 80748898 80749174 -146775404 - AluSx SINE Alu -25 287 1 1737 174 0 23 chr3 80749251 80749550 -146775028 - AluJo SINE Alu -20 292 1 1688 156 25 25 chr3 80749578 80749861 -146774717 + AluJb SINE Alu 2 284 -28 315 0 0 0 chr3 80749861 80749896 -146774682 + (CA)n Simple_repeat Simple_repeat 2 36 0 564 232 166 19 chr3 80750167 80750378 -146774200 + HsTC2 DNA Tc2 11 252 -1646 326 174 43 0 chr3 80750402 80750471 -146774107 + L1MC4 LINE L1 7970 8041 -1 1091 197 141 7 chr3 80750479 80750769 -146773809 + HsTC2 DNA Tc2 232 560 -1338 255 289 60 12 chr3 80751061 80751144 -146773434 + L2 LINE L2 3150 3236 -36 2312 101 0 0 chr3 80752211 80752507 -146772071 - AluSc SINE Alu -13 296 1 784 243 84 0 chr3 80752637 80752851 -146771727 + MIR SINE MIR 29 260 -2 210 180 0 0 chr3 80754250 80754311 -146770267 + CT-rich Low_complexity Low_complexity 2 62 0 195 42 0 0 chr3 80755014 80755038 -146769540 + (TA)n Simple_repeat Simple_repeat 2 25 0 516 253 34 7 chr3 80757659 80757805 -146766773 + L1MC/D LINE L1 5558 5707 -2101 22 56 0 0 chr3 80757856 80757892 -146766686 + AT_rich Low_complexity Low_complexity 1 36 0 1513 150 127 0 chr3 80757892 80758145 -146766433 - AluJb SINE Alu -27 285 1 300 271 113 23 chr3 80758167 80758300 -146766278 - L1ME4a LINE L1 -22 6099 5955 494 279 6 48 chr3 80758390 80758636 -146765942 - L1ME4a LINE L1 -327 5794 5584 268 98 0 0 chr3 80758640 80758681 -146765897 - MADE1 DNA Mariner -38 42 2 2108 131 7 0 chr3 80758736 80759042 -146765536 + AluSx SINE Alu 1 308 -4 2205 129 3 0 chr3 80759409 80759720 -146764858 - AluSx SINE Alu 0 312 1 217 0 0 57 chr3 80759862 80759897 -146764681 + (CAAAA)n Simple_repeat Simple_repeat 1 33 0 310 268 73 8 chr3 80759921 80760044 -146764534 - MER103 DNA DNA -20 146 16 290 279 272 14 chr3 80760082 80760229 -146764349 + MIR SINE MIR 20 204 -58 204 240 20 0 chr3 80760269 80760319 -146764259 + MIR SINE MIR 212 262 0 186 255 0 21 chr3 80760962 80761009 -146763569 - MIR3 SINE MIR -9 199 154 * 371 269 108 17 chr3 80761005 80761154 -146763424 + MER5A DNA MER1_type 17 187 -2 777 288 131 36 chr3 80761217 80761824 -146762754 - L2 LINE L2 0 3313 2626 405 0 0 0 chr3 80762223 80762268 -146762310 + (CA)n Simple_repeat Simple_repeat 2 46 0 1618 204 0 3 chr3 80762413 80762721 -146761857 - AluJb SINE Alu 0 307 1 1818 168 7 17 chr3 80763265 80763557 -146761021 + AluJo SINE Alu 1 289 -23 330 217 171 16 chr3 80763746 80763875 -146760703 + L1ME4a LINE L1 5950 6098 -23 704 230 47 9 chr3 80764265 80764478 -146760100 - L1ME2 LINE L1 -9 6155 5935 1381 167 17 4 chr3 80764487 80764721 -146759857 - AluJo SINE Alu -75 237 1 400 214 146 22 chr3 80764725 80764903 -146759675 - L1ME2 LINE L1 -218 5946 5747 22 56 0 0 chr3 80764914 80764950 -146759628 + AT_rich Low_complexity Low_complexity 1 36 0 3405 154 32 10 chr3 80765067 80765690 -146758888 - L1MB2 LINE L1 -7 6164 5528 2113 150 0 0 chr3 80765690 80765996 -146758582 - AluSx SINE Alu -6 306 1 290 234 53 80 chr3 80766355 80766543 -146758035 - L1MEd LINE L1 -4862 1257 1075 1992 130 21 0 chr3 80767516 80767800 -146756778 + AluSg SINE Alu 1 290 -20 333 197 0 0 chr3 80767805 80767876 -146756702 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 406 132 22 44 chr3 80767877 80767968 -146756610 - L1MB3 LINE L1 -19 6164 6076 1598 148 188 3 chr3 80768235 80768587 -146755991 - MSTA LTR MaLR -11 417 1 305 207 103 11 chr3 80768822 80768909 -146755669 - L1ME4a LINE L1 -76 6045 5951 273 29 0 0 chr3 80769111 80769145 -146755433 + (TG)n Simple_repeat Simple_repeat 1 34 0 252 0 0 0 chr3 80769144 80769172 -146755406 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 1422 196 30 4 chr3 80769172 80769443 -146755135 - AluJb SINE Alu -34 278 1 368 278 13 73 chr3 80769737 80769792 -146754786 + MIR SINE MIR 113 170 -92 2241 114 3 0 chr3 80769792 80770091 -146754487 + AluSx SINE Alu 1 300 -12 368 278 13 73 chr3 80770091 80770186 -146754392 + MIR SINE MIR 170 254 -8 186 133 0 0 chr3 80770260 80770290 -146754288 + (CAG)n Simple_repeat Simple_repeat 2 31 0 318 316 7 15 chr3 80770291 80770427 -146754151 + (TAG)n Simple_repeat Simple_repeat 3 137 0 5640 36 0 0 chr3 80770490 80771156 -146753422 + L1PA3 LINE L1 5487 6152 -3 22 70 0 0 chr3 80771156 80771199 -146753379 + AT_rich Low_complexity Low_complexity 1 43 0 1676 156 71 4 chr3 80771866 80772135 -146752443 + AluJb SINE Alu 1 287 -25 1527 84 0 0 chr3 80772683 80772873 -146751705 - AluY SINE Alu -9 302 113 2156 114 3 3 chr3 80773067 80773365 -146751213 + AluSx SINE Alu 1 298 -14 3632 195 82 41 chr3 80774326 80774534 -146750044 - L1MD2 LINE L1 0 6359 6161 204 40 0 0 chr3 80774534 80774559 -146750019 + (TG)n Simple_repeat Simple_repeat 2 26 0 3632 195 82 41 chr3 80774559 80775716 -146748862 - L1MD2 LINE L1 -198 6161 4905 2099 99 14 0 chr3 80776235 80776529 -146748049 + AluSx SINE Alu 1 298 -14 2221 101 20 0 chr3 80776642 80776940 -146747638 + AluSx SINE Alu 1 304 -8 1417 112 36 9 chr3 80778166 80778390 -146746188 - MER30 DNA MER1_type 0 230 1 2268 131 0 0 chr3 80778678 80778990 -146745588 + AluSx SINE Alu 1 312 0 1997 92 18 85 chr3 80779330 80779658 -146744920 - AluSp SINE Alu -7 306 1 889 145 79 75 chr3 80780990 80781217 -146743361 + MER46A DNA MER2_type 1 228 -8 2297 99 0 10 chr3 80783989 80784292 -146740286 + AluSx SINE Alu 1 300 -12 1895 146 30 24 chr3 80784634 80784969 -146739609 - MER44D DNA MER2_type -1 608 2 22 0 0 0 chr3 80785404 80785426 -146739152 + AT_rich Low_complexity Low_complexity 1 22 0 2110 111 38 0 chr3 80786309 80786597 -146737981 - AluSx SINE Alu -13 299 1 665 284 107 5 chr3 80787340 80787381 -146737197 - MIR SINE MIR -25 237 202 737 256 88 31 chr3 80787381 80787698 -146736880 + MER46C DNA MER2_type 2 336 -2 665 284 107 5 chr3 80787698 80787871 -146736707 - MIR SINE MIR -60 202 1 1529 222 95 77 chr3 80788127 80789038 -146735540 - L1MC5 LINE L1 -494 7467 6531 1941 148 3 0 chr3 80789389 80789667 -146734911 + AluSx SINE Alu 2 283 -29 402 21 0 0 chr3 80789667 80789714 -146734864 + (CA)n Simple_repeat Simple_repeat 1 47 0 1941 148 3 0 chr3 80789714 80789725 -146734853 + AluSx SINE Alu 283 292 -20 522 189 0 41 chr3 80789897 80790019 -146734559 - L1MC5 LINE L1 -1956 5852 5736 729 160 8 8 chr3 80790195 80790326 -146734252 + FLAM_C SINE Alu 2 132 -1 882 127 100 7 chr3 80790412 80790562 -146734016 - AluJb SINE Alu -13 299 136 3965 66 29 41 chr3 80790643 80791204 -146733374 - MER41A LTR ERV1 0 554 1 254 169 65 78 chr3 80791238 80791315 -146733263 + MIR SINE MIR 187 262 0 25 83 0 0 chr3 80792591 80792651 -146731927 + GC_rich Low_complexity Low_complexity 1 60 0 23 105 0 0 chr3 80792674 80792760 -146731818 + GC_rich Low_complexity Low_complexity 1 86 0 204 214 45 67 chr3 80793159 80793248 -146731330 - L2 LINE L2 -200 3072 2986 1383 160 122 8 chr3 80794345 80794608 -146729970 - AluJb SINE Alu -2 310 18 216 67 0 0 chr3 80794762 80794792 -146729786 + (A)n Simple_repeat Simple_repeat 1 30 0 303 257 19 57 chr3 80795028 80795133 -146729445 + L2 LINE L2 3188 3288 -25 977 254 62 8 chr3 80795300 80795544 -146729034 - MIR SINE MIR -5 257 1 717 195 17 17 chr3 80795608 80795782 -146728796 + MER58B DNA MER1_type 167 340 -1 458 275 40 13 chr3 80795822 80795971 -146728607 + L2 LINE L2 3159 3311 -2 180 0 0 0 chr3 80796041 80796061 -146728517 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1940 120 3 33 chr3 80798308 80798609 -146725969 - AluSx SINE Alu -16 296 5 27 49 0 0 chr3 80798617 80798658 -146725920 + AT_rich Low_complexity Low_complexity 1 41 0 311 307 93 58 chr3 80798992 80799197 -146725381 - MIR SINE MIR -50 212 1 203 336 89 34 chr3 80799288 80799434 -146725144 + MIR SINE MIR 90 243 -19 435 66 16 0 chr3 80799889 80799950 -146724628 - MLT1A1 LTR MaLR 0 365 304 431 167 0 0 chr3 80799946 80800018 -146724560 - MLT1A2 LTR MaLR -302 72 1 * 328 292 20 64 chr3 80800874 80800905 -146723673 + L1MC5 LINE L1 7719 7750 -211 1822 176 7 0 chr3 80800905 80801201 -146723377 - AluJb SINE Alu -14 298 1 328 292 20 64 chr3 80801201 80801371 -146723207 + L1MC5 LINE L1 7750 7911 -50 773 202 0 0 chr3 80801945 80802074 -146722504 + FLAM_C SINE Alu 1 129 -4 407 281 125 5 chr3 80802112 80802304 -146722274 - L1ME3A LINE L1 -12 6158 5944 1877 98 114 3 chr3 80802371 80802668 -146721910 - THE1B LTR MaLR -34 330 1 480 204 97 156 chr3 80802698 80802967 -146721611 - L1MD2 LINE L1 -86 6273 6021 1914 148 0 42 chr3 80803015 80803325 -146721253 + AluJb SINE Alu 1 297 -15 725 182 263 14 chr3 80803620 80803829 -146720749 - MLT1F1 LTR MaLR 0 567 307 1791 107 0 8 chr3 80803830 80804073 -146720505 - AluSc SINE Alu -68 241 1 2354 80 0 10 chr3 80804725 80805025 -146719553 + AluSc SINE Alu 1 297 -12 22 35 0 0 chr3 80805158 80805187 -146719391 + AT_rich Low_complexity Low_complexity 1 29 0 1832 149 13 23 chr3 80805739 80806041 -146718537 - AluJb SINE Alu -11 301 3 300 290 108 37 chr3 80806729 80806943 -146717635 - MIR SINE MIR -14 248 20 1970 121 61 10 chr3 80807117 80807414 -146717164 - AluSx SINE Alu 0 312 1 221 313 0 0 chr3 80808111 80808178 -146716400 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 2128 135 0 0 chr3 80808317 80808614 -146715964 + AluSx SINE Alu 1 297 -15 234 209 142 104 chr3 80808929 80809063 -146715515 + MIR SINE MIR 114 252 -10 327 362 49 5 chr3 80810023 80810208 -146714370 - MIR SINE MIR -62 200 8 2075 130 7 0 chr3 80811177 80811476 -146713102 - AluSx SINE Alu -11 301 1 835 204 0 0 chr3 80811659 80811796 -146712782 - AluJo SINE Alu -47 265 129 815 153 0 83 chr3 80811888 80811957 -146712621 - AluJo SINE Alu -167 145 72 2902 71 8 0 chr3 80811957 80812309 -146712269 + THE1A LTR MaLR 1 355 0 12625 92 2 1 chr3 80812309 80813887 -146710691 + THE1A-int LTR MaLR 1 1580 0 2956 68 6 3 chr3 80813887 80814241 -146710337 + THE1A LTR MaLR 1 355 0 815 153 0 83 chr3 80814241 80814313 -146710265 - AluJo SINE Alu -237 75 14 280 216 60 126 chr3 80814517 80814684 -146709894 - L1MC/D LINE L1 -2062 5746 5591 2102 107 0 4 chr3 80815355 80815636 -146708942 + AluSx SINE Alu 25 304 -8 572 264 51 19 chr3 80815700 80815916 -146708662 + MIR SINE MIR 40 262 0 198 0 0 0 chr3 80816022 80816044 -146708534 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 861 215 14 0 chr3 80816045 80816189 -146708389 - FRAM SINE Alu -30 146 1 2504 82 0 0 chr3 80816210 80816513 -146708065 - AluSq SINE Alu -10 303 1 1675 137 8 0 chr3 80817805 80818054 -146706524 + AluSx SINE Alu 41 291 -21 672 278 152 29 chr3 80819085 80819608 -146704970 - L2 LINE L2 -4 3309 2728 1404 222 70 43 chr3 80819639 80820215 -146704363 + MLT1D LTR MaLR 18 505 0 273 292 111 80 chr3 80820256 80820544 -146704034 - L2 LINE L2 -670 2644 2348 539 266 27 33 chr3 80820898 80821082 -146703496 - MIR SINE MIR -77 185 3 198 71 0 0 chr3 80821731 80821759 -146702819 + (TG)n Simple_repeat Simple_repeat 1 28 0 561 309 12 0 chr3 80821823 80821985 -146702593 + MIR SINE MIR 1 164 -98 2339 91 3 0 chr3 80822003 80822299 -146702279 - AluSq SINE Alu -16 297 1 2122 120 0 0 chr3 80823436 80823743 -146700835 - AluSx SINE Alu 0 307 1 1802 175 0 7 chr3 80823772 80824069 -146700509 + AluSx SINE Alu 1 295 -17 1082 232 87 24 chr3 80825602 80826016 -146698562 - MER113 DNA MER1_type? -7 514 75 218 306 40 40 chr3 80827171 80827295 -146697283 + MIR SINE MIR 47 170 -92 877 258 67 5 chr3 80827899 80828108 -146696470 + MER58A DNA MER1_type 3 224 0 1015 139 23 12 chr3 80828632 80828804 -146695774 - AluSg/x SINE Alu -4 305 132 1981 148 7 0 chr3 80828805 80829102 -146695476 - AluSx SINE Alu -13 299 1 381 43 0 0 chr3 80829306 80829353 -146695225 + (CA)n Simple_repeat Simple_repeat 2 48 0 25 0 0 0 chr3 80830064 80830089 -146694489 + AT_rich Low_complexity Low_complexity 1 25 0 246 146 93 0 chr3 80830094 80830169 -146694409 + MER58 DNA MER1_type 125 2418 -2 1284 238 83 68 chr3 80831249 80831882 -146692696 - L2 LINE L2 0 3313 2657 574 284 90 23 chr3 80831890 80832277 -146692301 - LTR16A LTR ERVL -20 430 18 255 333 32 0 chr3 80832303 80832429 -146692149 - L1MC5 LINE L1 -569 7392 7263 455 208 79 0 chr3 80832435 80832536 -146692042 - MER58C DNA MER1_type -38 177 69 278 96 135 0 chr3 80832546 80832598 -146691980 - MIR SINE MIR -150 112 54 267 157 0 0 chr3 80832656 80832707 -146691871 + GA-rich Low_complexity Low_complexity 4 54 0 1705 181 10 0 chr3 80832796 80833099 -146691479 - AluJo SINE Alu -6 306 1 206 288 120 16 chr3 80833850 80833975 -146690603 + MIR SINE MIR 124 261 -1 553 229 50 21 chr3 80834011 80834151 -146690427 + MER5B DNA MER1_type 35 178 0 2205 102 0 0 chr3 80834267 80834550 -146690028 + AluSc SINE Alu 1 283 -26 568 204 66 7 chr3 80834564 80834701 -146689877 + MER103 DNA DNA 20 164 -2 185 295 16 33 chr3 80835997 80836058 -146688520 - L2 LINE L2 -1871 1443 1384 260 259 0 0 chr3 80836394 80836448 -146688130 + CT-rich Low_complexity Low_complexity 6 59 0 481 278 80 2 chr3 80836813 80836987 -146687591 + MIR SINE MIR 7 183 -57 2335 151 26 3 chr3 80837131 80837514 -146687064 - MER57A LTR ERV1 0 403 12 1778 164 3 10 chr3 80837514 80837807 -146686771 - AluJb SINE Alu -21 291 1 186 235 0 118 chr3 80838300 80838402 -146686176 + MIR3 SINE MIR 109 198 -10 7781 47 0 0 chr3 80838858 80839966 -146684612 - L1PA6 LINE L1 0 6154 5050 1686 160 37 17 chr3 80840500 80840794 -146683784 - AluSx SINE Alu -10 302 3 211 233 14 82 chr3 80843353 80843426 -146681152 + MIR SINE MIR 60 127 -81 766 244 22 35 chr3 80844193 80844422 -146680156 - L1ME LINE L1 -342 5779 5554 2092 155 0 0 chr3 80844422 80844725 -146679853 - AluSx SINE Alu -9 303 1 1598 175 14 11 chr3 80845427 80845727 -146678851 + AluJb SINE Alu 1 301 0 755 217 39 11 chr3 80845756 80845936 -146678642 - L1MC5 LINE L1 -54 7907 7723 321 302 78 0 chr3 80846014 80846130 -146678448 + MIR SINE MIR 76 200 -62 2624 107 3 0 chr3 80846265 80846612 -146677966 + L1PB1 LINE L1 5804 6151 0 439 329 225 25 chr3 80847681 80848241 -146676337 - L2 LINE L2 -513 2801 2130 207 69 0 0 chr3 80848285 80848314 -146676264 + (T)n Simple_repeat Simple_repeat 1 29 0 2004 206 55 71 chr3 80848403 80848966 -146675612 + MLT1H1 LTR MaLR 2 555 0 274 253 21 74 chr3 80849071 80849166 -146675412 + MIR SINE MIR 123 212 -50 25 83 0 0 chr3 80849228 80849288 -146675290 + AT_rich Low_complexity Low_complexity 1 60 0 1224 165 63 5 chr3 80849979 80850185 -146674393 - MER20 DNA MER1_type -1 218 1 591 295 75 21 chr3 80850858 80850945 -146673633 - MIR SINE MIR -3 259 178 1564 223 24 12 chr3 80850945 80851282 -146673296 + MER58B DNA MER1_type 1 341 0 591 295 75 21 chr3 80851282 80851435 -146673143 - MIR SINE MIR -84 178 6 386 127 16 0 chr3 80852242 80852305 -146672273 + L1ME2 LINE L1 6039 6102 -62 604 197 154 100 chr3 80854488 80854747 -146669831 - ORSL DNA AcHobo -2 273 1 461 293 18 12 chr3 80854747 80854914 -146669664 - LTR33 LTR ERVL -23 498 331 289 203 122 0 chr3 80854920 80854994 -146669584 - LTR33 LTR ERVL -380 141 59 2228 107 20 3 chr3 80855110 80855410 -146669168 - AluSx SINE Alu -7 305 1 381 229 38 19 chr3 80855753 80855858 -146668720 + MIR SINE MIR 118 224 -38 350 247 0 0 chr3 80855830 80855907 -146668671 - MIR SINE MIR 0 262 186 * 537 260 20 73 chr3 80855911 80856115 -146668463 + MLT1K LTR MaLR 392 584 -4 308 204 11 0 chr3 80856124 80856148 -146668430 + (TA)n Simple_repeat Simple_repeat 2 24 -66 1853 144 129 67 chr3 80856148 80856551 -146668027 + MSTA LTR MaLR 1 428 0 308 204 11 0 chr3 80856551 80856614 -146667964 + (TA)n Simple_repeat Simple_repeat 24 90 0 2231 107 0 0 chr3 80856717 80856997 -146667581 + AluSc SINE Alu 1 280 -29 466 300 13 13 chr3 80857096 80857246 -146667332 - MIR SINE MIR -90 172 23 1330 165 173 0 chr3 80858143 80858398 -146666180 - AluJb SINE Alu -13 299 1 1652 183 19 42 chr3 80858701 80859062 -146665516 - L1MB7 LINE L1 0 6184 5832 1859 141 0 37 chr3 80859062 80859361 -146665217 - AluSx SINE Alu -21 291 4 357 75 0 0 chr3 80859684 80859737 -146664841 + (CA)n Simple_repeat Simple_repeat 2 54 0 384 194 0 117 chr3 80860841 80860944 -146663634 - U6 snRNA snRNA -16 91 1 311 296 55 0 chr3 80860958 80861098 -146663480 + MIR SINE MIR 33 182 -63 256 348 90 0 chr3 80861213 80861368 -146663210 + L1ME4a LINE L1 5639 5807 -314 325 254 168 19 chr3 80861398 80861607 -146662971 + L1ME4a LINE L1 5879 6118 -3 1118 161 36 54 chr3 80861641 80861864 -146662714 + MER20 DNA MER1_type 1 219 0 1732 176 0 17 chr3 80862576 80862878 -146661700 - AluJo SINE Alu -15 297 1 384 91 0 0 chr3 80863166 80863221 -146661357 - MLT2B1 LTR ERVL 0 520 466 404 147 53 14 chr3 80863222 80863438 -146661140 + (TA)n Simple_repeat Simple_repeat 1 224 0 2180 202 52 30 chr3 80863438 80863904 -146660674 - MLT2B1 LTR ERVL -43 477 2 226 180 98 0 chr3 80864034 80864095 -146660483 + L2 LINE L2 2214 2280 -1034 226 295 32 11 chr3 80864182 80864277 -146660301 + MIR SINE MIR 110 206 -56 522 216 101 65 chr3 80865010 80865209 -146659369 + MLT1K LTR MaLR 378 583 -5 2265 118 0 9 chr3 80866442 80866757 -146657821 - AluSx SINE Alu 0 312 1 387 360 14 0 chr3 80866767 80866914 -146657664 + L2 LINE L2 3118 3266 -6 225 375 0 0 chr3 80866966 80867046 -146657532 + L2 LINE L2 3156 3235 -37 23 0 0 0 chr3 80867048 80867071 -146657507 + AT_rich Low_complexity Low_complexity 1 23 0 2326 152 41 55 chr3 80867196 80867390 -146657188 - L1MB3 LINE L1 -2 6181 5986 1553 99 49 18 chr3 80867390 80867613 -146656965 - MER30 DNA MER1_type 0 230 1 2326 152 41 55 chr3 80867613 80867641 -146656937 - L1MB3 LINE L1 -197 5986 5959 1816 162 7 14 chr3 80867641 80867931 -146656647 - AluJo SINE Alu -13 299 12 2326 152 41 55 chr3 80867931 80868220 -146656358 - L1MB3 LINE L1 -224 5959 5676 1247 180 0 0 chr3 80869325 80869536 -146655042 - L1PB4 LINE L1 -4 6152 5942 265 287 56 74 chr3 80869596 80869846 -146654732 + MIR SINE MIR 24 262 0 688 246 148 45 chr3 80870319 80870649 -146653929 + L2 LINE L2 2944 3307 -6 2659 132 56 9 chr3 80870861 80871307 -146653271 - MLT1C LTR MaLR 0 467 1 774 293 22 29 chr3 80871529 80871840 -146652738 + L2 LINE L2 2982 3290 -23 192 77 0 0 chr3 80871845 80871871 -146652707 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 263 239 303 9 chr3 80872319 80872428 -146652150 - MER5A DNA MER1_type -5 184 44 350 233 4 42 chr3 80872468 80872564 -146652014 + MIR SINE MIR 72 166 -42 2670 46 3 0 chr3 80872678 80872985 -146651593 - AluY SINE Alu -3 308 1 1558 204 17 28 chr3 80926982 80927340 -146597238 + MLT2C1 LTR ERVL 1 354 -43 228 163 0 0 chr3 80927340 80927383 -146597195 + (TG)n Simple_repeat Simple_repeat 2 44 0 509 75 0 0 chr3 80927486 80927553 -146597025 - Alu SINE Alu -241 68 2 362 251 22 98 chr3 80928151 80928334 -146596244 - L2 LINE L2 -8 3305 3137 228 239 0 0 chr3 80928338 80928384 -146596194 + MER91 DNA MER1_type 1 46 -144 1995 107 11 4 chr3 80928439 80928710 -146595868 + AluSx SINE Alu 35 307 -5 235 184 0 0 chr3 80928767 80928816 -146595762 - L1ME3A LINE L1 0 6170 6122 2014 133 13 41 chr3 80928816 80929131 -146595447 + AluJo SINE Alu 1 306 -6 2065 117 0 0 chr3 80929271 80929544 -146595034 + AluSx SINE Alu 1 273 -39 2296 86 6 29 chr3 80930105 80930418 -146594160 - AluSc SINE Alu -3 306 1 2357 101 0 0 chr3 80930434 80930742 -146593836 - AluSg SINE Alu -2 308 1 362 239 0 0 chr3 80930812 80930883 -146593695 + MER103 DNA DNA 12 82 -84 1515 199 10 0 chr3 80930883 80931175 -146593403 - AluJo SINE Alu -7 305 11 1770 148 46 7 chr3 80931193 80931477 -146593101 - AluJb SINE Alu -17 295 1 180 281 16 31 chr3 80931776 80931840 -146592738 + L2 LINE L2 3209 3271 -1 387 323 79 6 chr3 80931848 80932012 -146592566 + MIR SINE MIR 23 198 -64 1071 184 0 0 chr3 80932047 80932215 -146592363 - FRAM SINE Alu -11 165 1 1004 44 44 0 chr3 80932243 80932402 -146592176 + (TCC)n Simple_repeat Simple_repeat 3 168 0 1459 164 9 0 chr3 80933282 80933507 -146591071 - AluJo SINE Alu -85 227 1 2314 103 0 13 chr3 80933511 80933823 -146590755 - AluSp SINE Alu -5 308 1 2382 99 0 0 chr3 80934136 80934428 -146590150 + AluSg SINE Alu 5 296 -14 979 129 0 0 chr3 80935241 80935373 -146589205 - AluSc SINE Alu -26 283 152 1372 241 17 3 chr3 80935373 80935730 -146588848 - L1 LINE L1 -3605 2541 2180 924 265 151 23 chr3 80935831 80935982 -146588596 + L1MC4 LINE L1 6888 7018 -1024 2059 118 11 0 chr3 80935982 80936262 -146588316 - AluSx SINE Alu -29 283 1 924 265 151 23 chr3 80936262 80936627 -146587951 + L1MC4 LINE L1 7018 7470 -572 223 333 60 47 chr3 80936645 80936795 -146587783 - MER5A DNA MER1_type -1 188 37 571 268 57 40 chr3 80936851 80937079 -146587499 + L1MC4 LINE L1 7517 7748 -294 204 268 99 0 chr3 80937112 80937183 -146587395 + L2 LINE L2 3154 3231 -41 244 143 0 86 chr3 80937183 80937253 -146587325 + L1MC4 LINE L1 6640 6703 -1339 180 0 0 0 chr3 80937253 80937273 -146587305 + (TA)n Simple_repeat Simple_repeat 2 21 0 486 0 0 0 chr3 80937273 80937327 -146587251 + (GA)n Simple_repeat Simple_repeat 2 55 0 1542 150 0 0 chr3 80937349 80937569 -146587009 - AluSx SINE Alu -92 220 1 2309 114 0 0 chr3 80938565 80938864 -146585714 - AluSp SINE Alu -13 300 2 491 290 116 34 chr3 80938925 80939132 -146585446 - MIR SINE MIR 0 262 39 1977 111 90 0 chr3 80939277 80939556 -146585022 - AluSx SINE Alu -8 304 1 1040 159 17 11 chr3 80939641 80939817 -146584761 - FRAM SINE Alu 0 176 1 248 213 33 0 chr3 80940030 80940091 -146584487 + (TAGA)n Simple_repeat Simple_repeat 2 64 0 2526 74 0 0 chr3 80940191 80940500 -146584078 - AluSc SINE Alu 0 309 1 23 68 0 0 chr3 80940533 80940577 -146584001 + AT_rich Low_complexity Low_complexity 1 44 0 182 224 138 0 chr3 80941000 80941058 -146583520 + MIR3 SINE MIR 100 165 -43 2270 100 0 7 chr3 80941327 80941618 -146582960 + AluSx SINE Alu 1 289 -23 185 0 40 0 chr3 80941621 80941646 -146582932 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 1908 125 9 65 chr3 80941775 80942096 -146582482 - AluSx SINE Alu -9 303 1 205 315 0 0 chr3 80942197 80942251 -146582327 + (CA)n Simple_repeat Simple_repeat 2 55 0 239 317 0 24 chr3 80943323 80943405 -146581173 - L2 LINE L2 -1 3271 3192 222 254 177 15 chr3 80943870 80944000 -146580578 - MIR SINE MIR -34 228 78 200 254 15 30 chr3 80944125 80944146 -146580432 + (TTCA)n Simple_repeat Simple_repeat 1 21 -45 2221 133 0 0 chr3 80944146 80944455 -146580123 - AluSx SINE Alu -3 309 1 200 254 15 30 chr3 80944455 80944500 -146580078 + (TTCA)n Simple_repeat Simple_repeat 21 66 0 305 226 98 15 chr3 80944788 80944921 -146579657 + L1ME4a LINE L1 5978 6121 0 1603 191 35 3 chr3 80945079 80945367 -146579211 - AluJo SINE Alu -15 297 1 442 286 104 33 chr3 80945429 80945880 -146578698 - L1ME4a LINE L1 0 6121 5639 73 245 0 0 chr3 80946005 80946148 -146578430 + GC_rich Low_complexity Low_complexity 1 143 0 383 119 0 0 chr3 80946248 80946307 -146578271 + Alu SINE Alu 243 301 -1 2262 109 0 13 chr3 80946315 80946617 -146577961 - AluSx SINE Alu -14 298 1 804 210 35 48 chr3 80946626 80946855 -146577723 + L1MC4 LINE L1 7228 7453 -589 812 241 27 0 chr3 80946868 80947055 -146577523 + MER63A DNA MER1_type 16 207 -3 1765 225 106 13 chr3 80947058 80947595 -146576983 + L1MC4 LINE L1 7455 8041 -1 1017 134 0 49 chr3 80947616 80947780 -146576798 + FRAM SINE Alu 11 166 -10 927 182 0 0 chr3 80948158 80948317 -146576261 + FRAM SINE Alu 1 159 -7 2085 149 0 0 chr3 80948526 80948827 -146575751 - AluSx SINE Alu -11 301 1 972 223 58 0 chr3 80949131 80949337 -146575241 - MER20 DNA MER1_type 0 219 2 2051 140 0 17 chr3 80949874 80950036 -146574542 - AluJb SINE Alu -17 295 139 2183 117 3 10 chr3 80950036 80950336 -146574242 - AluSx SINE Alu -14 298 1 2051 140 0 17 chr3 80950336 80950473 -146574105 - AluJb SINE Alu -173 139 1 519 168 64 56 chr3 80950492 80950617 -146573961 - L1ME3 LINE L1 0 6162 6037 247 259 75 68 chr3 80951030 80951121 -146573457 + MIR SINE MIR 81 175 -87 3676 121 17 8 chr3 80951121 80951643 -146572935 - MER1A DNA MER1_type 0 527 1 247 259 75 68 chr3 80951643 80951698 -146572880 + MIR SINE MIR 175 228 -34 677 227 0 0 chr3 80952035 80952167 -146572411 - FRAM SINE Alu -48 128 1 3696 172 84 48 chr3 80952299 80953594 -146570984 + pTR5 LTR ERV1 35 594 -120 2215 113 3 0 chr3 80953876 80954177 -146570401 - AluSg SINE Alu -8 302 1 2112 139 0 0 chr3 80954179 80954474 -146570104 - AluSx SINE Alu -17 295 1 1488 224 38 18 chr3 80954484 80954667 -146569911 + L1ME3A LINE L1 5567 5745 -425 2253 77 33 3 chr3 80954667 80954967 -146569611 - AluSp SINE Alu -4 309 1 1488 224 38 18 chr3 80954967 80955176 -146569402 + L1ME3A LINE L1 5745 5967 -203 310 67 22 0 chr3 80955184 80955229 -146569349 + Alu SINE Alu 1 46 -253 475 291 77 48 chr3 80955549 80955783 -146568795 - MIR SINE MIR -14 248 6 610 191 26 0 chr3 80956534 80956649 -146567929 + MER58A DNA MER1_type 45 162 0 676 206 85 0 chr3 80956877 80957018 -146567560 - MER117 DNA MER1_type -44 153 1 1630 162 19 51 chr3 80957614 80957928 -146566650 + AluJo SINE Alu 1 304 -8 264 302 35 0 chr3 80959556 80959642 -146564936 + MLT1K LTR MaLR 499 587 -1 366 231 13 0 chr3 80959720 80959798 -146564780 - L2 LINE L2 -30 3242 3164 232 210 32 16 chr3 80960112 80960174 -146564404 + MIR SINE MIR 135 197 -65 21 0 0 0 chr3 80960333 80960354 -146564224 + AT_rich Low_complexity Low_complexity 1 21 0 1462 172 39 32 chr3 80960460 80960745 -146563833 + AluJo SINE Alu 1 287 -25 240 286 71 18 chr3 80961286 80961398 -146563180 + MIR SINE MIR 116 233 -29 333 317 77 0 chr3 80962029 80962133 -146562445 - L2 LINE L2 -13 3259 3148 575 215 8 8 chr3 80962394 80962515 -146562063 - MLT1L LTR MaLR -348 267 147 1720 188 3 3 chr3 80962807 80963111 -146561467 + AluJb SINE Alu 1 304 -8 26 0 0 0 chr3 80963576 80963602 -146560976 + AT_rich Low_complexity Low_complexity 1 26 0 1521 174 51 37 chr3 80964259 80964553 -146560025 - AluJo SINE Alu -14 298 1 547 358 105 38 chr3 80964614 80964669 -146559909 - L2 LINE L2 -1 3271 3221 419 198 0 12 chr3 80964669 80964750 -146559828 + MADE1 DNA Mariner 1 80 0 547 358 105 38 chr3 80964750 80965066 -146559512 - L2 LINE L2 -51 3221 2875 467 257 9 0 chr3 80965922 80966027 -146558551 - MER91A DNA MER1_type -90 106 1 1747 103 28 0 chr3 80966139 80966392 -146558186 + L1MA5A LINE L1 6038 6297 0 282 211 124 92 chr3 80966420 80966605 -146557973 - L1ME4a LINE L1 -51 6070 5880 240 232 0 0 chr3 80966658 80966714 -146557864 - L1ME4a LINE L1 -2 6119 6064 2067 148 25 22 chr3 80966752 80967116 -146557462 - L1MB8 LINE L1 0 6178 5814 2618 152 90 17 chr3 80967172 80967652 -146556926 - L1MB7 LINE L1 -30 6154 5640 2335 177 48 9 chr3 80967647 80968082 -146556496 - L1MB8 LINE L1 -345 5829 5378 * 1986 152 7 0 chr3 80968135 80968432 -146556146 - AluSx SINE Alu -13 299 1 5693 67 7 10 chr3 80969458 80970170 -146554408 - L1PA8 LINE L1 -3 6169 5460 1554 192 88 34 chr3 80970262 80970616 -146553962 + MLT1A2 LTR MaLR 2 374 0 310 248 16 93 chr3 80970749 80970878 -146553700 + MIR SINE MIR 90 208 -54 379 355 54 27 chr3 80972171 80972540 -146552038 + L2 LINE L2 2889 3267 -5 311 169 185 0 chr3 80972614 80972679 -146551899 - L2 LINE L2 -9 3263 3187 532 254 39 55 chr3 80972696 80972877 -146551701 + MER20B DNA MER1_type 1 178 -605 2362 71 0 3 chr3 80973113 80973408 -146551170 + L1PA5 LINE L1 5860 6153 -1 26 0 0 0 chr3 80973408 80973434 -146551144 + AT_rich Low_complexity Low_complexity 1 26 0 2022 157 3 3 chr3 80973734 80974046 -146550532 - AluSx SINE Alu 0 312 1 1170 158 32 41 chr3 80974068 80974289 -146550289 - MER20 DNA MER1_type 0 219 1 1209 138 5 60 chr3 80975288 80975326 -146549252 + L1PB4 LINE L1 5938 5977 -179 2290 91 3 0 chr3 80975326 80975624 -146548954 + AluSg SINE Alu 1 299 -11 1209 138 5 60 chr3 80975624 80975803 -146548775 + L1PB4 LINE L1 5977 6143 -13 358 373 51 17 chr3 80975898 80976134 -146548444 - MIR SINE MIR -18 244 1 708 237 62 11 chr3 80976135 80976312 -146548266 - MER5A DNA MER1_type -2 187 2 1316 186 87 14 chr3 80977240 80977515 -146547063 + AluJo SINE Alu 1 295 -17 23 33 0 0 chr3 80977603 80977633 -146546945 + AT_rich Low_complexity Low_complexity 1 30 0 183 42 0 0 chr3 80978199 80978223 -146546355 + (TG)n Simple_repeat Simple_repeat 2 25 0 820 185 8 0 chr3 80980558 80980688 -146543890 + FLAM_A SINE Alu 1 131 -2 767 172 49 74 chr3 80980719 80980797 -146543781 + L1MA4 LINE L1 6101 6179 -121 1719 202 0 0 chr3 80980797 80981084 -146543494 + AluJo SINE Alu 1 287 -25 767 172 49 74 chr3 80981084 80981208 -146543370 + L1MA4 LINE L1 6179 6298 -2 497 268 139 1 chr3 80981416 80981626 -146542952 + MIR SINE MIR 19 252 -10 455 262 153 77 chr3 80981635 80982013 -146542565 - MLT1K LTR MaLR -3 585 179 390 222 25 32 chr3 80982020 80982171 -146542407 + MER106B DNA MER1_type 2 973 -86 1018 113 0 0 chr3 80982182 80982315 -146542263 + AluSq/x SINE Alu 1 133 -180 2130 149 0 0 chr3 80982317 80982626 -146541952 + AluSx SINE Alu 1 309 -3 325 205 0 26 chr3 80982628 80982706 -146541872 + MER106B DNA MER1_type 984 1059 0 461 289 36 6 chr3 80984035 80984201 -146540377 + MIR SINE MIR 86 256 -6 1104 171 8 114 chr3 80984719 80984965 -146539613 + MER58A DNA MER1_type 3 222 -2 1884 160 3 0 chr3 80985079 80985366 -146539212 + AluJb SINE Alu 1 288 -24 262 224 184 20 chr3 80985705 80985803 -146538775 - L2 LINE L2 -213 3059 2946 601 306 101 21 chr3 80986080 80986407 -146538171 - MLT1I LTR MaLR 0 409 57 1439 237 51 48 chr3 80986432 80986547 -146538031 - LTR16A LTR ERVL -5 445 332 2046 118 3 33 chr3 80986547 80986852 -146537726 + AluSx SINE Alu 11 306 -6 1439 237 51 48 chr3 80986852 80987129 -146537449 - LTR16A LTR ERVL -118 332 52 23 33 0 0 chr3 80987506 80987536 -146537042 + AT_rich Low_complexity Low_complexity 1 30 0 394 286 87 87 chr3 80989067 80989319 -146535259 + MIR SINE MIR 6 257 -5 957 165 6 19 chr3 80989329 80989696 -146534882 + (TGGA)n Simple_repeat Simple_repeat 1 362 0 363 291 87 23 chr3 80990291 80990463 -146534115 + MIR SINE MIR 6 188 -74 607 286 19 19 chr3 80990551 80990757 -146533821 + MIR SINE MIR 33 238 -24 186 103 0 0 chr3 80990757 80990786 -146533792 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1606 171 18 18 chr3 80990786 80991066 -146533512 - AluJo SINE Alu -32 280 1 253 347 60 7 chr3 80991076 80991226 -146533352 - MIR SINE MIR -13 249 92 742 231 56 26 chr3 80991650 80991845 -146532733 + MIR SINE MIR 4 204 -58 2145 113 0 0 chr3 80991960 80992274 -146532304 - AluSx SINE Alu 0 314 1 499 343 177 20 chr3 80992295 80992752 -146531826 - L2 LINE L2 -20 3252 2718 441 231 43 8 chr3 80992754 80992871 -146531707 - L2 LINE L2 -3 3310 3190 1476 225 97 83 chr3 80992881 80993762 -146530816 + L2 LINE L2 2406 3312 -1 331 355 101 6 chr3 80993749 80993918 -146530660 - L2 LINE L2 -577 2737 2553 * 205 200 0 0 chr3 80994527 80994567 -146530011 + A-rich Low_complexity Low_complexity 2 41 0 1867 124 0 12 chr3 80995695 80995952 -146528626 + AluJb SINE Alu 1 254 -58 679 266 58 18 chr3 80996339 80996565 -146528013 + MIR SINE MIR 22 256 -6 330 273 160 30 chr3 80996747 80996978 -146527600 + L1ME LINE L1 5546 5806 -315 273 184 11 23 chr3 80997180 80997267 -146527311 + (TATG)n Simple_repeat Simple_repeat 1 86 0 23 0 0 0 chr3 80997295 80997318 -146527260 + AT_rich Low_complexity Low_complexity 1 23 0 1974 153 10 0 chr3 80997594 80997894 -146526684 + AluJb SINE Alu 6 308 -4 329 0 26 0 chr3 80998156 80998195 -146526383 + U1 snRNA snRNA 1 40 -125 464 245 161 62 chr3 80998259 80998366 -146526212 - L1ME LINE L1 -297 5824 5729 1855 169 23 7 chr3 80998366 80998548 -146526030 - AluSx SINE Alu 0 312 121 423 0 0 0 chr3 80998548 80998595 -146525983 + (TG)n Simple_repeat Simple_repeat 2 48 0 1855 169 23 7 chr3 80998595 80998719 -146525859 - AluSx SINE Alu -191 121 1 464 245 161 62 chr3 80998719 80998858 -146525720 - L1ME LINE L1 -392 5729 5605 1953 135 24 0 chr3 80998858 80999154 -146525424 + AluSx SINE Alu 1 303 -9 464 245 161 62 chr3 80999154 80999310 -146525268 - L1ME LINE L1 -516 5605 5381 22 0 0 0 chr3 80999767 80999789 -146524789 + AT_rich Low_complexity Low_complexity 1 22 0 318 277 24 0 chr3 81000837 81000920 -146523658 + MLT1L LTR MaLR 146 230 -385 2547 64 0 0 chr3 81000967 81001263 -146523315 + AluY SINE Alu 1 296 -15 878 148 7 22 chr3 81001271 81001406 -146523172 + FLAM_C SINE Alu 1 133 0 575 263 123 33 chr3 81001439 81001682 -146522896 + MLT1L LTR MaLR 343 607 -8 1743 113 4 0 chr3 81001960 81002199 -146522379 - AluSg SINE Alu -11 299 60 932 237 68 20 chr3 81002283 81002532 -146522046 + MIR SINE MIR 2 262 0 2397 210 73 40 chr3 81002597 81003217 -146521361 + L1ME2 LINE L1 5443 6082 -82 3239 205 53 97 chr3 81003298 81004502 -146520076 + L1MC5 LINE L1 6763 7913 -48 307 285 76 0 chr3 81004650 81004778 -146519800 + MIR SINE MIR 8 143 -65 1315 205 92 54 chr3 81005611 81005891 -146518687 - MSTD LTR MaLR -12 384 84 1734 183 0 0 chr3 81005891 81006192 -146518386 - AluJb SINE Alu 0 311 11 1315 205 92 54 chr3 81006192 81006280 -146518298 - MSTD LTR MaLR -312 84 1 741 203 45 0 chr3 81006280 81006410 -146518168 - MER45A DNA AcHobo -28 150 15 404 230 86 75 chr3 81007665 81007839 -146516739 - MLT1K LTR MaLR -2 586 411 326 109 0 18 chr3 81007957 81008012 -146516566 - MLT2A1 LTR ERVL 0 453 400 269 180 0 16 chr3 81008012 81008073 -146516505 + (TATATG)n Simple_repeat Simple_repeat 2 61 0 3243 62 0 5 chr3 81008073 81008479 -146516099 - MLT2A1 LTR ERVL -40 404 1 2146 116 0 13 chr3 81008612 81008913 -146515665 - AluSx SINE Alu -15 297 1 477 259 25 19 chr3 81009986 81010144 -146514434 - MIR SINE MIR -30 232 74 24 32 0 0 chr3 81010300 81010331 -146514247 + AT_rich Low_complexity Low_complexity 1 31 0 201 195 0 0 chr3 81010986 81011027 -146513551 + (CA)n Simple_repeat Simple_repeat 1 41 0 23 0 0 0 chr3 81011552 81011575 -146513003 + AT_rich Low_complexity Low_complexity 1 23 0 518 393 0 6 chr3 81012776 81012959 -146511619 - MIR3 SINE MIR -12 196 15 42859 60 3 1 chr3 81013662 81019795 -146504783 - L1PA5 LINE L1 0 6154 11 363 287 72 51 chr3 81020002 81020197 -146504381 + MIR3 SINE MIR 9 207 -1 282 319 0 0 chr3 81020264 81020333 -146504245 + polypyrimidine Low_complexity Low_complexity 1 69 0 2387 107 0 0 chr3 81020776 81021085 -146503493 + AluSx SINE Alu 1 309 -3 1737 167 3 14 chr3 81021411 81021699 -146502879 + AluJo SINE Alu 9 293 -19 310 102 34 0 chr3 81021710 81021769 -146502809 - L1MA5A LINE L1 -260 6037 5977 * 1520 84 56 0 chr3 81021768 81021983 -146502595 + L1MA5A LINE L1 6024 6250 -47 977 226 151 51 chr3 81022694 81023026 -146501552 - MLT1A1 LTR MaLR 0 365 1 185 269 45 15 chr3 81023735 81023802 -146500776 - L2 LINE L2 -20 3252 3184 452 315 71 20 chr3 81023932 81024129 -146500449 - MIR SINE MIR -43 219 13 1954 151 38 16 chr3 81024160 81024479 -146500099 + L1PA13 LINE L1 5819 6144 -19 186 43 0 0 chr3 81024483 81024506 -146500072 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 240 77 0 0 chr3 81025014 81025053 -146499525 - L1PA8 LINE L1 0 6172 6134 669 278 56 10 chr3 81025133 81025331 -146499247 - MIR SINE MIR -33 229 23 294 239 0 0 chr3 81025718 81025785 -146498793 - MIR SINE MIR -16 246 180 2726 126 4 9 chr3 81025797 81026187 -146498391 - L1PA15 LINE L1 0 6165 5779 7645 50 0 0 chr3 81026187 81027627 -146496951 - L1PA4 LINE L1 -1 6154 4714 2726 126 4 9 chr3 81027627 81027692 -146496886 - L1PA15 LINE L1 -386 5779 5715 2165 111 17 3 chr3 81027692 81027990 -146496588 - AluSx SINE Alu -10 302 1 347 194 0 0 chr3 81028002 81028074 -146496504 - MIR SINE MIR -63 199 128 445 289 39 53 chr3 81028080 81028287 -146496291 + L2 LINE L2 2616 2819 -495 429 209 360 0 chr3 81028287 81028426 -146496152 - MER5A DNA MER1_type 0 189 1 840 165 26 100 chr3 81028520 81028633 -146495945 + MER106A DNA MER1_type 3 92 -144 2010 134 45 0 chr3 81028633 81028923 -146495655 + AluSx SINE Alu 1 303 -9 840 165 26 100 chr3 81028923 81029039 -146495539 + MER106A DNA MER1_type 92 215 -21 1361 107 4 33 chr3 81029041 81029303 -146495275 + AluSg SINE Alu 2 312 0 503 295 47 0 chr3 81029324 81029473 -146495105 + L2 LINE L2 2911 3066 -247 817 138 6 149 chr3 81029478 81029652 -146494926 - AluJo SINE Alu -27 285 137 499 261 92 52 chr3 81029652 81029901 -146494677 + L2 LINE L2 3055 3313 0 191 373 0 17 chr3 81029909 81029968 -146494610 - MIR SINE MIR -173 89 32 860 172 0 8 chr3 81030171 81030305 -146494273 - AluJo SINE Alu -169 133 1 335 264 57 9 chr3 81030409 81030515 -146494063 - MIR SINE MIR -117 145 35 247 206 175 0 chr3 81030826 81030889 -146493689 + L2 LINE L2 3235 3308 -5 1802 151 29 35 chr3 81031777 81032088 -146492490 + AluJo SINE Alu 1 309 -3 183 258 121 30 chr3 81032116 81032182 -146492396 + L3 LINE CR1 115 186 -1391 296 273 18 27 chr3 81032242 81032352 -146492226 + MIR SINE MIR 108 216 -46 2193 118 0 0 chr3 81032544 81032848 -146491730 - AluSg1 SINE Alu -5 304 1 21 0 0 0 chr3 81032875 81032896 -146491682 + AT_rich Low_complexity Low_complexity 1 21 0 626 249 100 29 chr3 81032896 81033137 -146491441 - MIR SINE MIR -2 260 3 350 219 102 31 chr3 81033180 81033308 -146491270 - MIR SINE MIR -112 150 14 986 100 0 8 chr3 81033859 81033989 -146490589 + FLAM_C SINE Alu 1 129 -14 2352 105 0 0 chr3 81034011 81034315 -146490263 + AluSg SINE Alu 1 304 -6 28 0 0 0 chr3 81034350 81034378 -146490200 + AT_rich Low_complexity Low_complexity 1 28 0 520 252 47 8 chr3 81034477 81034604 -146489974 - L2 LINE L2 0 3313 3182 897 80 40 8 chr3 81034714 81034839 -146489739 - L1PA14 LINE L1 0 6161 6033 2193 90 0 14 chr3 81034850 81035138 -146489440 + AluSx SINE Alu 27 310 -2 1208 145 0 0 chr3 81035138 81035317 -146489261 + AluSg/x SINE Alu 134 312 0 1180 167 181 18 chr3 81035548 81035577 -146489001 + MER63B DNA MER1_type 1 24 -1038 4458 121 8 20 chr3 81035577 81036220 -146488358 - MER41B LTR ERV1 0 635 1 1180 167 181 18 chr3 81036220 81036472 -146488106 + MER63B DNA MER1_type 24 328 -108 1711 147 31 35 chr3 81038398 81038684 -146485894 + AluJo SINE Alu 1 285 -27 326 243 93 9 chr3 81038796 81038903 -146485675 + MIR SINE MIR 147 262 0 305 329 97 22 chr3 81038975 81039121 -146485457 - MIR SINE MIR -59 149 20 417 39 0 0 chr3 81039526 81039577 -146485001 + (TTTC)n Simple_repeat Simple_repeat 2 52 0 1391 177 72 11 chr3 81039579 81039844 -146484734 - AluJo SINE Alu -31 281 1 880 187 139 0 chr3 81040016 81040203 -146484375 + MER20 DNA MER1_type 1 213 -6 320 284 46 0 chr3 81040212 81040321 -146484257 + L2 LINE L2 3200 3313 0 703 281 5 38 chr3 81040804 81040989 -146483589 + MIR SINE MIR 7 185 -77 405 0 0 0 chr3 81041001 81041046 -146483532 + (TA)n Simple_repeat Simple_repeat 2 46 0 2235 94 13 7 chr3 81041072 81041370 -146483208 - AluSx SINE Alu -12 300 1 259 301 26 18 chr3 81041504 81041617 -146482961 + CT-rich Low_complexity Low_complexity 1 114 0 334 245 80 87 chr3 81041671 81041769 -146482809 + MIR SINE MIR 44 141 -121 1863 148 0 14 chr3 81041769 81042060 -146482518 + AluJo SINE Alu 16 302 -10 334 245 80 87 chr3 81042060 81042185 -146482393 + MIR SINE MIR 141 254 -8 1668 188 28 3 chr3 81042647 81042935 -146481643 + AluJb SINE Alu 1 295 -17 399 226 10 39 chr3 81042990 81043092 -146481486 - L2 LINE L2 0 3313 3215 1539 160 110 11 chr3 81044062 81044344 -146480234 - AluJo SINE Alu -2 310 1 29 0 0 0 chr3 81044407 81044436 -146480142 + AT_rich Low_complexity Low_complexity 1 29 0 477 269 103 13 chr3 81044517 81044673 -146479905 + MIR3 SINE MIR 33 202 -6 329 258 313 11 chr3 81044839 81045021 -146479557 + MIR SINE MIR 4 240 -22 298 302 35 0 chr3 81045379 81045465 -146479113 - MIR SINE MIR -140 122 34 228 308 77 42 chr3 81045473 81045616 -146478962 + MIR SINE MIR 90 237 -25 496 286 45 45 chr3 81045733 81045953 -146478625 - Charlie8 DNA MER1_type -2153 264 45 1575 207 7 10 chr3 81046380 81046680 -146477898 + AluJo SINE Alu 1 299 -13 2236 106 0 26 chr3 81046876 81047188 -146477390 - AluSx SINE Alu -6 306 3 336 209 47 35 chr3 81047306 81047392 -146477186 - MLT1K LTR MaLR -315 273 187 1561 119 171 16 chr3 81047564 81047815 -146476763 - AluSg SINE Alu -10 290 1 508 296 67 11 chr3 81048167 81048346 -146476232 + MIR SINE MIR 53 241 -21 349 318 71 7 chr3 81048591 81048745 -146475833 + MIR SINE MIR 96 259 -3 486 280 107 22 chr3 81048861 81049132 -146475446 + L1MC4a LINE L1 5666 5959 -1849 205 244 0 0 chr3 81049132 81049173 -146475405 + (CA)n Simple_repeat Simple_repeat 2 42 0 24 53 0 0 chr3 81049260 81049298 -146475280 + AT_rich Low_complexity Low_complexity 1 38 0 1043 169 23 12 chr3 81049599 81049771 -146474807 - FAM SINE Alu 0 175 2 1861 166 0 3 chr3 81049802 81050103 -146474475 - AluJb SINE Alu -12 300 1 1970 149 3 3 chr3 81050113 81050409 -146474169 - AluSx SINE Alu -16 296 1 23 33 0 0 chr3 81050412 81050442 -146474136 + AT_rich Low_complexity Low_complexity 1 30 0 2889 10 0 0 chr3 81050486 81050797 -146473781 - AluY SINE Alu 0 311 1 447 248 163 0 chr3 81051416 81051569 -146473009 + MIR SINE MIR 5 182 -80 2027 99 46 11 chr3 81051755 81052038 -146472540 - AluSx SINE Alu -19 293 1 603 259 62 0 chr3 81052619 81052781 -146471797 + MIR SINE MIR 20 191 -71 192 40 0 0 chr3 81052816 81052841 -146471737 + (TTA)n Simple_repeat Simple_repeat 2 26 0 279 0 0 0 chr3 81054042 81054073 -146470505 + (TC)n Simple_repeat Simple_repeat 2 32 0 * 306 98 0 0 chr3 81054072 81054123 -146470455 + (TG)n Simple_repeat Simple_repeat 2 52 0 1537 179 7 31 chr3 81054908 81055199 -146469379 + AluJo SINE Alu 1 284 -28 1520 166 3 62 chr3 81055224 81055531 -146469047 + AluJo SINE Alu 12 300 -12 796 299 102 50 chr3 81055531 81055915 -146468663 - L2 LINE L2 -18 3295 2882 1963 149 0 7 chr3 81055915 81056216 -146468362 + AluJb SINE Alu 1 299 -13 796 299 102 50 chr3 81056216 81056292 -146468286 - L2 LINE L2 -431 2882 2811 419 188 0 12 chr3 81056310 81056395 -146468183 + MIR SINE MIR 77 160 -102 1942 124 28 0 chr3 81057016 81057306 -146467272 + AluSx SINE Alu 1 298 -14 1015 172 0 0 chr3 81058891 81059054 -146465524 - FRAM SINE Alu -20 156 1 256 226 39 0 chr3 81059109 81059184 -146465394 + HsTC2 DNA Tc2 3 87 -1811 180 330 87 19 chr3 81059567 81059670 -146464908 + MIR SINE MIR 153 262 0 2245 112 0 26 chr3 81060149 81060461 -146464117 - AluSx SINE Alu -8 304 1 895 165 0 99 chr3 81060461 81060643 -146463935 - FRAM SINE Alu -2 164 1 1943 146 3 37 chr3 81060691 81061013 -146463565 - AluJb SINE Alu -1 311 1 22 56 0 0 chr3 81061061 81061097 -146463481 + AT_rich Low_complexity Low_complexity 1 36 0 954 265 19 109 chr3 81061222 81061312 -146463266 - L1MC4a LINE L1 -1901 5907 5810 1010 178 12 0 chr3 81061312 81061481 -146463097 - FAM SINE Alu -2 173 3 954 265 19 109 chr3 81061481 81061553 -146463025 - L1MC4a LINE L1 -1998 5810 5733 2265 90 0 32 chr3 81061553 81061864 -146462714 - AluSq SINE Alu -12 301 1 954 265 19 109 chr3 81061864 81062187 -146462391 - L1MC4a LINE L1 -2075 5733 5465 1892 144 11 18 chr3 81063025 81063336 -146461242 + AluSx SINE Alu 1 309 0 2169 117 10 0 chr3 81063619 81063926 -146460652 + AluSx SINE Alu 1 310 -2 209 301 71 44 chr3 81065484 81065597 -146458981 - L2 LINE L2 -1 3312 3197 916 264 142 35 chr3 81065633 81066301 -146458277 - L2 LINE L2 -1 3312 2576 378 170 94 28 chr3 81067706 81067812 -146456766 + L1ME4a LINE L1 5991 6103 -18 2037 132 0 0 chr3 81068548 81068845 -146455733 + AluSg SINE Alu 9 305 0 626 246 21 58 chr3 81068906 81069036 -146455542 - MER20 DNA MER1_type 0 219 97 1873 146 11 0 chr3 81069036 81069323 -146455255 + AluJb SINE Alu 1 290 -22 626 246 21 58 chr3 81069323 81069383 -146455195 - MER20 DNA MER1_type -122 97 36 367 287 108 24 chr3 81069392 81069559 -146455019 + MIR SINE MIR 18 198 -64 2238 124 10 0 chr3 81070746 81071053 -146453525 - AluSx SINE Alu -2 310 1 206 288 50 0 chr3 81072315 81072395 -146452183 + L2 LINE L2 2953 3036 -236 494 313 6 17 chr3 81072534 81072710 -146451868 + MIR SINE MIR 2 175 -87 207 0 0 0 chr3 81072721 81072744 -146451834 + (A)n Simple_repeat Simple_repeat 1 23 0 323 294 20 14 chr3 81073858 81074004 -146450574 + MIR SINE MIR 110 256 -6 1617 182 42 64 chr3 81074593 81074822 -146449756 - LTR56 LTR ERV1 0 445 229 2109 107 6 28 chr3 81074822 81075141 -146449437 - AluSx SINE Alu 0 312 1 1617 182 42 64 chr3 81075141 81075366 -146449212 - LTR56 LTR ERV1 -216 229 1 262 267 0 0 chr3 81075400 81075463 -146449115 - MIR SINE MIR -87 121 59 328 160 17 92 chr3 81077383 81077502 -146447076 - MER5C DNA MER1_type -7 317 208 2282 118 0 0 chr3 81077552 81077856 -146446722 + AluSg SINE Alu 1 304 -6 247 359 78 18 chr3 81077906 81078073 -146446505 + MER115 DNA AcHobo 51 227 -466 5683 241 77 34 chr3 81078073 81078795 -146445783 - L1MEc LINE L1 -4235 2161 1471 2150 127 0 3 chr3 81078795 81079094 -146445484 - AluSx SINE Alu -14 298 1 5683 241 77 34 chr3 81079094 81079461 -146445117 - L1MEc LINE L1 -4925 1471 1121 2234 121 0 6 chr3 81079461 81079776 -146444802 - AluSq SINE Alu 0 313 1 5683 241 77 34 chr3 81079776 81080666 -146443912 - L1MEc LINE L1 -5275 1121 90 257 0 30 0 chr3 81080666 81080699 -146443879 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5683 241 77 34 chr3 81080699 81080749 -146443829 - L1MEc LINE L1 -6306 90 44 2305 101 3 16 chr3 81081236 81081553 -146443025 - AluSq SINE Alu 0 313 1 546 194 48 0 chr3 81081764 81081867 -146442711 - FLAM_C SINE Alu -35 108 1 371 206 56 0 chr3 81081877 81081984 -146442594 - L1MC4 LINE L1 -812 7230 7118 237 111 185 86 chr3 81082212 81082293 -146442285 - L1PA8A LINE L1 -568 5563 5475 189 0 0 0 chr3 81082468 81082489 -146442089 + (A)n Simple_repeat Simple_repeat 1 21 0 281 106 0 21 chr3 81133997 81134044 -146390534 - FLAM SINE Alu -4 129 84 772 167 0 42 chr3 81134046 81134190 -146390388 - FLAM_C SINE Alu 0 143 6 189 229 0 0 chr3 81134566 81134601 -146389977 - MIR3 SINE MIR -21 187 153 614 181 65 58 chr3 81134746 81134884 -146389694 + MER58B DNA MER1_type 195 333 -8 242 313 16 0 chr3 81134898 81134962 -146389616 + MER5A DNA MER1_type 125 189 0 225 179 18 54 chr3 81134976 81135032 -146389546 - MIR SINE MIR -62 146 93 369 192 14 14 chr3 81135426 81135499 -146389079 - L2 LINE L2 -1 3271 3199 217 176 59 0 chr3 81135538 81135589 -146388989 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 782 273 18 35 chr3 81135654 81135881 -146388697 - MIR SINE MIR -10 252 30 1069 223 5 19 chr3 81136099 81136314 -146388264 + MER58A DNA MER1_type 12 223 -1 298 232 0 0 chr3 81136322 81136391 -146388187 + MER103 DNA DNA 17 85 -81 3936 151 21 60 chr3 81137047 81137762 -146386816 + L1MB4 LINE L1 5429 6114 -66 1767 154 11 7 chr3 81137762 81138042 -146386536 - AluJo SINE Alu -31 281 1 3936 151 21 60 chr3 81138042 81138089 -146386489 + L1MB4 LINE L1 6114 6161 -19 290 211 54 24 chr3 81138090 81138256 -146386322 + (TA)n Simple_repeat Simple_repeat 2 172 0 555 89 7 71 chr3 81138275 81138556 -146386022 + (TA)n Simple_repeat Simple_repeat 1 262 0 375 168 21 78 chr3 81138579 81138770 -146385808 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 1623 177 3 11 chr3 81138793 81139076 -146385502 - AluJo SINE Alu -31 281 1 216 0 0 0 chr3 81140542 81140566 -146384012 + (T)n Simple_repeat Simple_repeat 1 24 0 319 338 162 14 chr3 81140916 81141132 -146383446 + L2 LINE L2 2965 3212 -60 399 219 29 36 chr3 81141284 81141421 -146383157 - LTR16C LTR ERVL -2 489 354 23 0 0 0 chr3 81141737 81141760 -146382818 + AT_rich Low_complexity Low_complexity 1 23 0 528 213 92 21 chr3 81142005 81142146 -146382432 - L1ME4a LINE L1 -1 6120 5970 219 255 0 0 chr3 81142247 81142298 -146382280 + CT-rich Low_complexity Low_complexity 2 52 0 275 29 0 0 chr3 81142316 81142351 -146382227 - L1ME4a LINE L1 -3 6118 6084 996 189 0 0 chr3 81142430 81142599 -146381979 - MER58B DNA MER1_type 0 341 173 396 216 112 26 chr3 81142725 81142841 -146381737 - L2 LINE L2 -15 3298 3173 655 274 45 29 chr3 81142898 81143143 -146381435 - L1ME4a LINE L1 -336 5785 5537 199 309 0 24 chr3 81143350 81143434 -146381144 - MIR SINE MIR -9 253 172 232 247 73 124 chr3 81143539 81143717 -146380861 + Charlie8 DNA MER1_type 2 170 -2247 4221 178 50 48 chr3 81143725 81144545 -146380033 - LTR12 LTR ERV1 0 826 5 263 187 13 27 chr3 81144560 81144635 -146379943 - pTR5 LTR ERV1 -1093 1345 1272 605 160 59 71 chr3 81144735 81144904 -146379674 - pTR5 LTR ERV1 -1530 908 742 1301 212 34 43 chr3 81146071 81146397 -146378181 + MER33 DNA MER1_type 2 324 0 530 277 133 23 chr3 81146594 81146834 -146377744 - MIR SINE MIR -5 257 2 334 296 35 26 chr3 81146937 81147052 -146377526 + L2 LINE L2 3198 3313 0 204 336 8 84 chr3 81147544 81147663 -146376915 + MIR3 SINE MIR 50 159 -49 371 297 58 32 chr3 81147664 81147819 -146376759 - MER117 DNA MER1_type 0 197 39 2057 127 0 3 chr3 81148357 81148696 -146375882 - AluSp SINE Alu 0 313 1 1170 167 298 0 chr3 81148698 81148926 -146375652 - AluJb SINE Alu -6 296 1 309 347 33 0 chr3 81149001 81149122 -146375456 - MIR SINE MIR -21 241 117 430 304 27 7 chr3 81149131 81149279 -146375299 - MIR SINE MIR -110 152 2 290 203 0 14 chr3 81149355 81149429 -146375149 + L1ME4a LINE L1 6048 6120 -1 465 311 40 7 chr3 81149460 81149620 -146374958 + MIR3 SINE MIR 16 181 -27 1177 185 5 22 chr3 81150496 81150718 -146373860 + L1ME LINE L1 5352 5569 -597 563 248 157 56 chr3 81150835 81151191 -146373387 - L1M4 LINE L1 -1104 5042 4619 1962 135 7 17 chr3 81151191 81151487 -146373091 + AluSx SINE Alu 1 293 -19 563 248 157 56 chr3 81151487 81151634 -146372944 - L1M4 LINE L1 -1527 4619 4488 289 371 58 39 chr3 81151720 81151925 -146372653 + L2 LINE L2 2686 2894 -420 914 317 71 20 chr3 81151970 81152377 -146372201 + L2 LINE L2 2884 3311 -2 1812 170 38 0 chr3 81152761 81153050 -146371528 - AluJo SINE Alu -12 300 1 406 309 72 14 chr3 81153095 81153234 -146371344 - MER5A DNA MER1_type -41 148 2 196 204 68 0 chr3 81153515 81153559 -146371019 + MIR3 SINE MIR 112 158 -50 2380 213 38 98 chr3 81153559 81154274 -146370304 + MER21B LTR ERV1 1 672 -191 3054 135 64 75 chr3 81154291 81154993 -146369585 + LTR8A LTR ERV1 34 727 0 481 168 67 107 chr3 81154995 81155144 -146369434 + MER21B LTR ERV1 673 815 -48 940 325 112 10 chr3 81156164 81156685 -146367893 + L2 LINE L2 2727 3313 0 180 0 0 0 chr3 81156691 81156711 -146367867 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1757 171 4 4 chr3 81156713 81156994 -146367584 - AluSg SINE Alu -29 281 1 1978 144 10 3 chr3 81157000 81157299 -146367279 - AluSx SINE Alu -11 301 1 538 187 17 29 chr3 81158086 81158221 -146366357 - L1ME1 LINE L1 -4 6330 6042 * 1742 239 17 59 chr3 81158217 81158694 -146365884 - L1ME1 LINE L1 0 6156 5693 2287 109 0 0 chr3 81158694 81158998 -146365580 - AluSx SINE Alu -8 304 1 1742 239 17 59 chr3 81158998 81159099 -146365479 - L1ME1 LINE L1 -463 5693 5589 825 324 46 21 chr3 81159377 81159956 -146364622 + L2 LINE L2 2579 3272 0 650 294 72 48 chr3 81160120 81160535 -146364043 - MLT1J2 LTR MaLR -13 437 13 416 262 77 38 chr3 81160686 81160869 -146363709 - LTR50 LTR ERVL -603 192 3 307 260 93 40 chr3 81161595 81161745 -146362833 - MLT1J LTR MaLR -353 158 1 241 277 10 70 chr3 81162172 81162388 -146362190 - MIR SINE MIR 0 262 16 887 223 137 56 chr3 81162530 81162903 -146361675 - MLT1J LTR MaLR -108 403 1 1889 159 0 23 chr3 81163617 81163926 -146360652 - AluJb SINE Alu -10 302 1 1642 271 41 37 chr3 81163950 81164437 -146360141 + LTR16C LTR ERVL 3 491 0 556 339 31 4 chr3 81164496 81164723 -146359855 + MIR SINE MIR 24 256 -6 457 264 0 33 chr3 81164734 81164855 -146359723 - MIR SINE MIR -114 148 32 407 266 0 0 chr3 81165675 81165754 -146358824 - MER81 DNA DNA -33 81 3 484 103 0 23 chr3 81166193 81166280 -146358298 + (TTCC)n Simple_repeat Simple_repeat 4 88 0 210 171 0 0 chr3 81166274 81166315 -146358263 + CT-rich Low_complexity Low_complexity 1 41 0 * 1782 190 0 3 chr3 81166322 81166633 -146357945 - AluJb SINE Alu -2 310 1 1301 277 95 37 chr3 81166641 81167103 -146357475 - LTR16C LTR ERVL -2 489 1 807 294 19 0 chr3 81167135 81167349 -146357229 - Charlie8 DNA MER1_type -2198 219 2 395 322 33 7 chr3 81167351 81167503 -146357075 - MIR3 SINE MIR -49 159 4 713 294 57 4 chr3 81167679 81167907 -146356671 - MIR SINE MIR -21 241 2 819 260 9 39 chr3 81167971 81168158 -146356420 + MER58A DNA MER1_type 1 181 -2239 2369 159 35 42 chr3 81168158 81168592 -146355986 + MSTB1 LTR MaLR 1 431 -1 819 260 9 39 chr3 81168592 81168635 -146355943 + MER58A DNA MER1_type 181 224 0 221 326 160 33 chr3 81168978 81169159 -146355419 + MIR SINE MIR 23 226 -36 702 265 111 26 chr3 81171277 81171511 -146353067 + MIR SINE MIR 8 261 -1 560 134 52 0 chr3 81171965 81172062 -146352516 + MER5A DNA MER1_type 11 112 -77 318 259 27 9 chr3 81172111 81172223 -146352355 + MER113 DNA MER1_type? 1 114 -407 275 231 15 0 chr3 81172362 81172427 -146352151 + MER113 DNA MER1_type? 454 519 -2 227 284 226 7 chr3 81172538 81172693 -146351885 + MIR3 SINE MIR 19 207 -1 * 306 304 146 62 chr3 81172676 81172916 -146351662 + MIR SINE MIR 3 262 0 721 309 16 16 chr3 81172943 81173189 -146351389 - MIR SINE MIR 0 262 17 334 283 54 42 chr3 81173232 81173398 -146351180 + MIR SINE MIR 63 230 -32 1821 173 0 10 chr3 81174710 81175011 -146349567 - AluJb SINE Alu -10 302 5 234 125 0 0 chr3 81175092 81175124 -146349454 + MER94 DNA DNA 1 32 -102 412 277 99 60 chr3 81175982 81176264 -146348314 + MLT1K LTR MaLR 222 514 -74 378 282 165 11 chr3 81176379 81176567 -146348011 + MER112 DNA MER1_type 1 217 -43 195 42 0 0 chr3 81177808 81177832 -146346746 + (TG)n Simple_repeat Simple_repeat 2 25 0 1842 122 0 11 chr3 81177875 81178146 -146346432 + AluSx SINE Alu 1 268 -44 25 0 0 0 chr3 81178275 81178300 -146346278 + AT_rich Low_complexity Low_complexity 1 25 0 2302 86 3 3 chr3 81178300 81178604 -146345974 + AluSg SINE Alu 1 304 -6 225 0 0 0 chr3 81178604 81178629 -146345949 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 288 0 0 0 chr3 81178628 81178660 -146345918 + (CA)n Simple_repeat Simple_repeat 2 33 0 213 289 181 0 chr3 81178742 81178825 -146345753 + MIR SINE MIR 17 114 -148 181 231 0 0 chr3 81178869 81178908 -146345670 + MIR SINE MIR 204 242 -20 21 57 0 0 chr3 81180081 81180116 -146344462 + GC_rich Low_complexity Low_complexity 1 35 0 212 98 0 49 chr3 81180674 81180715 -146343863 + (GGGA)n Simple_repeat Simple_repeat 1 39 0 241 209 209 35 chr3 81181129 81181215 -146343363 - MIR SINE MIR -110 152 52 230 293 0 0 chr3 81181612 81181670 -146342908 + CT-rich Low_complexity Low_complexity 3 60 0 187 256 0 0 chr3 81181905 81181944 -146342634 - MIR SINE MIR -3 259 221 197 265 0 0 chr3 81182027 81182076 -146342502 + L2 LINE L2 3151 3199 -73 318 306 3 3 chr3 81182122 81182241 -146342337 - MIR SINE MIR -62 146 28 699 281 0 0 chr3 81182681 81182848 -146341730 + MIR SINE MIR 96 262 0 40 49 0 0 chr3 81182891 81182952 -146341626 + AT_rich Low_complexity Low_complexity 1 61 0 404 273 52 52 chr3 81183041 81183213 -146341365 + MER5B DNA MER1_type 7 178 0 203 51 26 51 chr3 81183383 81183422 -146341156 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 42 36 0 0 chr3 81183716 81183772 -146340806 + AT_rich Low_complexity Low_complexity 1 56 0 2177 129 0 0 chr3 81183810 81184112 -146340466 - AluSx SINE Alu -10 302 1 501 251 54 18 chr3 81184528 81184708 -146339870 - MIR SINE MIR -44 218 33 354 206 55 0 chr3 81185350 81185423 -146339155 - MER116 DNA Mariner -3 77 1 247 204 347 10 chr3 81185888 81185986 -146338592 + Charlie8 DNA MER1_type 2 132 -2285 420 259 63 78 chr3 81186361 81186416 -146338162 - MIR3 SINE MIR -3 205 151 764 227 82 122 chr3 81186416 81186768 -146337810 - MER102b DNA MER1_type -3 338 1 420 259 63 78 chr3 81186768 81186917 -146337661 - MIR3 SINE MIR -57 151 4 308 300 52 62 chr3 81187634 81187844 -146336734 - L1MC4a LINE L1 -1756 6052 5845 204 97 0 0 chr3 81187861 81187892 -146336686 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 910 215 33 19 chr3 81188559 81188773 -146335805 - MER20 DNA MER1_type -1 218 2 235 287 53 53 chr3 81188879 81188973 -146335605 + MIR SINE MIR 20 113 -95 442 295 235 20 chr3 81189675 81189977 -146334601 + L2 LINE L2 2944 3310 -3 277 336 45 18 chr3 81189979 81190089 -146334489 + L2 LINE L2 2965 3077 -195 1049 210 5 45 chr3 81190139 81190363 -146334215 + MER20 DNA MER1_type 4 218 -1 1072 210 5 27 chr3 81191966 81192190 -146332388 + MER20 DNA MER1_type 1 219 0 631 251 179 29 chr3 81192761 81193068 -146331510 - LTR16A1 LTR ERVL -2 455 103 333 309 244 13 chr3 81193239 81193469 -146331109 - L2 LINE L2 -2 3270 2988 2144 144 17 23 chr3 81194064 81194410 -146330168 + MER2 DNA MER2_type 1 344 0 1243 239 10 46 chr3 81194674 81194980 -146329598 - MER102b DNA MER1_type -40 301 7 789 253 20 63 chr3 81195937 81196190 -146328388 - MIR SINE MIR -1 261 20 2000 125 39 0 chr3 81196526 81196805 -146327773 + AluSq SINE Alu 1 290 -23 438 101 0 0 chr3 81196806 81196875 -146327703 + (TA)n Simple_repeat Simple_repeat 2 70 0 2101 161 26 11 chr3 81197331 81197679 -146326899 + MLT1A1 LTR MaLR 1 353 -12 215 250 53 0 chr3 81198019 81198095 -146326483 - MIR SINE MIR -1 261 182 811 189 92 101 chr3 81198149 81198387 -146326191 + MER106B DNA MER1_type 1 1059 0 2287 80 13 25 chr3 81198443 81198757 -146325821 - AluY SINE Alu -1 310 1 351 287 44 72 chr3 81199014 81199195 -146325383 - MIR SINE MIR -76 186 11 606 266 80 31 chr3 81199267 81199493 -146325085 + Charlie8 DNA MER1_type 38 274 -2143 392 308 0 8 chr3 81200683 81200803 -146323775 - MER5B DNA MER1_type -36 142 24 274 333 128 21 chr3 81200951 81201185 -146323393 - MIR SINE MIR -1 261 3 265 254 0 16 chr3 81201512 81201575 -146323003 + MLT1K LTR MaLR 189 250 -338 1378 286 83 21 chr3 81202089 81202617 -146321961 - MLT1K LTR MaLR -11 577 17 813 172 6 94 chr3 81202744 81202924 -146321654 - AluJo SINE Alu -31 281 118 1562 180 40 0 chr3 81203694 81203972 -146320606 + AluJo SINE Alu 1 289 -23 351 281 42 93 chr3 81204039 81204119 -146320459 + L2 LINE L2 2038 2121 -1193 2232 125 3 0 chr3 81204119 81204430 -146320148 - AluSq SINE Alu -1 312 1 351 281 42 93 chr3 81204430 81204702 -146319876 + L2 LINE L2 2121 2372 -942 2031 134 7 3 chr3 81204964 81205255 -146319323 + AluSx SINE Alu 7 298 -14 437 230 58 0 chr3 81205263 81205350 -146319228 - MER58 DNA MER1_type -122 93 2 626 328 59 53 chr3 81205368 81205823 -146318755 + L2 LINE L2 2804 3261 -11 236 275 50 38 chr3 81206727 81206807 -146317771 - MIR3 SINE MIR -42 166 86 678 312 24 16 chr3 81208038 81208285 -146316293 - MIR SINE MIR -13 249 1 429 284 216 10 chr3 81208755 81208949 -146315629 + MIR SINE MIR 29 262 0 355 389 39 27 chr3 81208953 81209210 -146315368 + L2 LINE L2 3000 3259 -13 573 235 26 13 chr3 81209567 81209720 -146314858 - L1MC5 LINE L1 -44 7917 7763 321 223 160 11 chr3 81209820 81209914 -146314664 - L2 LINE L2 0 3272 3165 1008 181 75 32 chr3 81210051 81210394 -146314184 + MSTD LTR MaLR 1 396 0 629 339 48 12 chr3 81210395 81210575 -146314003 - L2 LINE L2 -255 3058 2886 1267 212 62 45 chr3 81210575 81210994 -146313584 - LTR37A LTR ERV1 0 426 1 629 339 48 12 chr3 81210994 81211214 -146313364 - L2 LINE L2 -427 2886 2649 501 159 0 28 chr3 81211236 81211343 -146313235 - LTR37A LTR ERV1 0 426 323 212 279 106 10 chr3 81211345 81211449 -146313129 - L2 LINE L2 -696 2618 2505 265 259 84 70 chr3 81212009 81212152 -146312426 - MIR3 SINE MIR -62 146 2 838 187 102 21 chr3 81212194 81212381 -146312197 + MER3 DNA MER1_type 1 202 -7 461 214 12 0 chr3 81212474 81212558 -146312020 - FLAM_A SINE Alu -57 85 1 297 0 0 0 chr3 81212573 81212606 -146311972 + (TTA)n Simple_repeat Simple_repeat 3 35 0 19776 41 2 2 chr3 81212606 81215839 -146308739 - L1PA5 LINE L1 -18 6136 2901 1149 115 0 0 chr3 81215839 81216021 -146308557 - L1P LINE L1 -5964 182 1 417 412 40 4 chr3 81216046 81216274 -146308304 - MIR SINE MIR -3 259 24 2062 134 3 0 chr3 81216586 81216885 -146307693 - AluSx SINE Alu -12 300 1 414 0 0 0 chr3 81218482 81218528 -146306050 + (CA)n Simple_repeat Simple_repeat 2 47 0 34 55 0 0 chr3 81218843 81218898 -146305680 + AT_rich Low_complexity Low_complexity 1 55 0 183 188 31 0 chr3 81219187 81219219 -146305359 - MER5B DNA MER1_type 0 178 146 263 250 9 0 chr3 81219420 81219536 -146305042 + (TA)n Simple_repeat Simple_repeat 2 118 0 923 294 78 13 chr3 81219618 81219992 -146304586 - MLT1J2 LTR MaLR -14 436 39 211 194 0 0 chr3 81220169 81220205 -146304373 + CT-rich Low_complexity Low_complexity 2 37 0 207 224 8 136 chr3 81220344 81220469 -146304109 - L2 LINE L2 -222 3050 2942 711 278 0 33 chr3 81221502 81221714 -146302864 + MIR SINE MIR 57 261 -1 1465 154 48 33 chr3 81223375 81223705 -146300873 + L1MA9 LINE L1 5977 6311 -1 342 274 36 55 chr3 81224063 81224282 -146300296 + L1M4 LINE L1 16 230 -6629 251 329 39 7 chr3 81224585 81224740 -146299838 + L1M4 LINE L1 1029 1188 -5667 1286 244 38 24 chr3 81224777 81225354 -146299224 + L1M4 LINE L1 1206 1785 -5070 * 1307 111 19 0 chr3 81225349 81225556 -146299022 + L1MA8 LINE L1 5593 5803 -488 1134 133 17 43 chr3 81225578 81225812 -146298766 + L1MA8 LINE L1 5909 6136 -155 426 177 0 0 chr3 81225822 81225901 -146298677 + L1M4 LINE L1 4570 4648 -2309 264 247 75 11 chr3 81225955 81226048 -146298530 - LTR67 LTR ERVL -1 556 458 2196 123 3 3 chr3 81226095 81226404 -146298174 + AluSc SINE Alu 1 309 0 749 255 89 4 chr3 81230224 81230483 -146294095 - L1ME3 LINE L1 0 6162 5882 777 314 95 26 chr3 81230673 81231138 -146293440 - L2 LINE L2 0 3313 2817 1613 171 25 18 chr3 81231341 81231616 -146292962 - AluJo SINE Alu -30 282 6 414 191 13 132 chr3 81231803 81231955 -146292623 - MER97a DNA MER1_type? -721 173 40 24 53 0 0 chr3 81232102 81232140 -146292438 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr3 81232210 81232233 -146292345 + AT_rich Low_complexity Low_complexity 1 23 0 431 56 69 56 chr3 81232297 81232369 -146292209 - Charlie1 DNA MER1_type 0 2761 2689 1679 169 38 0 chr3 81232391 81232681 -146291897 + AluSx SINE Alu 1 301 -11 640 255 102 0 chr3 81232713 81232909 -146291669 - Charlie1 DNA MER1_type -2545 216 1 2156 113 0 41 chr3 81234704 81235023 -146289555 - AluSx SINE Alu -6 306 1 424 213 48 53 chr3 81235234 81235441 -146289137 + L1MC5 LINE L1 6986 7191 -770 319 287 65 0 chr3 81235498 81235606 -146288972 + L1MC4 LINE L1 7353 7467 -575 1510 145 125 8 chr3 81235628 81235898 -146288680 + AluSg1 SINE Alu 3 301 0 1479 216 77 32 chr3 81235905 81236368 -146288210 + L1ME1 LINE L1 5448 5932 -230 2249 136 0 0 chr3 81236368 81236678 -146287900 + AluSx SINE Alu 1 310 -2 650 303 12 8 chr3 81237224 81237465 -146287113 - L1MC4 LINE L1 -604 7438 7197 2041 223 70 7 chr3 81237490 81238073 -146286505 - L1MC4 LINE L1 -953 7089 6470 211 204 37 19 chr3 81238106 81238160 -146286418 + GA-rich Low_complexity Low_complexity 3 57 0 2012 148 3 0 chr3 81238628 81238926 -146285652 + AluSx SINE Alu 1 299 -13 364 291 7 99 chr3 81239057 81239198 -146285380 + MER91C DNA MER1_type 13 140 0 371 285 114 13 chr3 81239524 81239682 -146284896 - L1ME4a LINE L1 -4 6117 5944 255 217 0 0 chr3 81239725 81239785 -146284793 + (TATATG)n Simple_repeat Simple_repeat 5 64 0 235 266 84 13 chr3 81239846 81240000 -146284578 - L1ME4a LINE L1 -215 5906 5742 23 33 0 0 chr3 81240191 81240221 -146284357 + AT_rich Low_complexity Low_complexity 1 30 0 2221 85 3 0 chr3 81240496 81240815 -146283763 + AluY SINE Alu 1 320 0 726 203 81 83 chr3 81241009 81241369 -146283209 + L1MC5 LINE L1 7581 7939 -22 223 299 118 24 chr3 81241562 81241689 -146282889 + L3 LINE CR1 1430 1568 -9 2241 123 0 0 chr3 81242306 81242608 -146281970 - AluSx SINE Alu -10 302 1 916 169 19 6 chr3 81242608 81242768 -146281810 - FRAM SINE Alu -4 162 1 292 286 35 137 chr3 81243132 81243298 -146281280 + MIR SINE MIR 47 186 -76 1427 202 50 41 chr3 81243298 81243660 -146280918 - MLT1A1 LTR MaLR 0 365 1 292 286 35 137 chr3 81243660 81243720 -146280858 + MIR SINE MIR 186 250 -12 225 0 0 0 chr3 81244083 81244108 -146280470 + (CA)n Simple_repeat Simple_repeat 1 25 0 481 286 98 25 chr3 81244344 81244547 -146280031 + MIR SINE MIR 28 245 -17 583 276 114 14 chr3 81244661 81244871 -146279707 + MIR SINE MIR 11 241 -21 2607 126 13 46 chr3 81244871 81245331 -146279247 - MER65A LTR ERV1 0 445 1 264 305 116 0 chr3 81245458 81245553 -146279025 + L2 LINE L2 3208 3313 0 525 327 56 9 chr3 81245620 81245834 -146278744 + MIR SINE MIR 29 252 -10 264 91 0 0 chr3 81246827 81246871 -146277707 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 494 353 78 64 chr3 81247162 81247738 -146276840 - L2 LINE L2 -1 3271 2678 204 226 0 0 chr3 81248290 81248343 -146276235 + (TA)n Simple_repeat Simple_repeat 1 53 0 436 343 102 9 chr3 81249387 81249603 -146274975 + MIR SINE MIR 14 249 -13 1345 204 74 14 chr3 81249735 81250020 -146274558 + AluJo SINE Alu 1 302 -10 3422 92 17 0 chr3 81250277 81250758 -146273820 - L1PB3 LINE L1 0 6154 5666 260 262 66 8 chr3 81250931 81251053 -146273525 - L1ME4a LINE L1 -6 6115 5987 25 65 0 0 chr3 81251157 81251203 -146273375 + AT_rich Low_complexity Low_complexity 1 46 0 278 267 57 28 chr3 81251231 81251407 -146273171 - L1ME4a LINE L1 -339 5782 5602 754 178 166 0 chr3 81251412 81251627 -146272951 - AluJb SINE Alu 0 330 88 234 251 193 64 chr3 81253043 81253214 -146271364 - MIR SINE MIR -12 250 58 5595 183 21 29 chr3 81253341 81254295 -146270283 - L1PA13 LINE L1 0 6163 5202 245 29 29 0 chr3 81254295 81254329 -146270249 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1971 136 0 7 chr3 81254329 81254616 -146269962 - AluSx SINE Alu -27 285 1 5595 183 21 29 chr3 81254616 81255159 -146269419 - L1PA13 LINE L1 -960 5203 4657 2287 102 0 0 chr3 81255159 81255453 -146269125 - AluSc SINE Alu -15 294 1 5595 183 21 29 chr3 81255453 81256009 -146268569 - L1PA13 LINE L1 -1506 4657 4106 1822 217 126 0 chr3 81256206 81256626 -146267952 + MLT2B1 LTR ERVL 3 487 -33 320 43 22 0 chr3 81256626 81256672 -146267906 + (CA)n Simple_repeat Simple_repeat 2 48 0 1822 217 126 0 chr3 81256672 81256711 -146267867 + MLT2B1 LTR ERVL 487 520 0 5313 178 23 13 chr3 81256843 81258395 -146266183 + L1PA15 LINE L1 4125 5692 -473 33794 84 10 6 chr3 81258397 81264511 -146260067 + L1PA6 LINE L1 11 6153 -1 3072 128 4 22 chr3 81264514 81265012 -146259566 + L1PA15 LINE L1 5677 6165 0 1206 148 0 0 chr3 81265270 81265452 -146259126 - AluSq SINE Alu -1 312 131 536 265 171 6 chr3 81265627 81265808 -146258770 - MIR SINE MIR -31 231 21 277 30 0 0 chr3 81265848 81265881 -146258697 + U2 snRNA snRNA 1 33 -155 388 271 13 110 chr3 81265881 81266117 -146258461 - L1MC5 LINE L1 -53 7908 7696 243 0 0 0 chr3 81266457 81266484 -146258094 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 18171 155 34 10 chr3 81267239 81267379 -146257199 - L1MA2 LINE L1 0 7723 7588 2816 16 0 6 chr3 81267379 81267699 -146256879 - AluYb8 SINE Alu 0 318 1 18171 155 34 10 chr3 81267699 81274634 -146249944 - L1MA2 LINE L1 -135 7588 461 253 367 85 45 chr3 81274666 81274865 -146249713 - L2 LINE L2 -558 2756 2550 837 196 10 62 chr3 81274919 81275113 -146249465 - MER5A DNA MER1_type 0 189 6 321 381 28 0 chr3 81275829 81276010 -146248568 + MER5A DNA MER1_type 4 189 0 431 274 22 0 chr3 81276671 81276806 -146247772 - L1ME2 LINE L1 -9 6155 6018 618 210 132 12 chr3 81276877 81276904 -146247674 + MER5A DNA MER1_type 3 25 -164 180 0 0 0 chr3 81276904 81276924 -146247654 + (CAG)n Simple_repeat Simple_repeat 1 20 0 618 210 132 12 chr3 81276924 81277063 -146247515 + MER5A DNA MER1_type 25 189 0 374 265 74 26 chr3 81278000 81278189 -146246389 + LTR37B LTR ERV1 1 198 -270 1747 221 75 18 chr3 81278227 81278680 -146245898 - MLT1D LTR MaLR 0 505 27 1539 191 36 0 chr3 81278693 81278970 -146245608 - AluJo SINE Alu -25 287 1 526 241 58 19 chr3 81279023 81279284 -146245294 + LTR37B LTR ERV1 197 467 -1 1424 169 25 0 chr3 81279284 81279562 -146245016 + L1MC3 LINE L1 6865 7149 -636 1352 138 24 20 chr3 81279562 81279815 -146244763 + MSTA LTR MaLR 1 254 -174 7556 216 22 11 chr3 81279832 81280195 -146244383 - L1 LINE L1 -1279 4867 4509 1868 165 7 0 chr3 81280195 81280515 -146244063 - AluSx SINE Alu 0 322 1 7556 216 22 11 chr3 81280515 81282118 -146242460 - L1 LINE L1 -1637 4509 2879 363 284 64 64 chr3 81282118 81282514 -146242064 + MLT1J1 LTR MaLR 41 495 -16 248 366 140 16 chr3 81282776 81283019 -146241559 + L2 LINE L2 2811 3083 -189 801 223 81 30 chr3 81283032 81283415 -146241163 - LTR16B LTR ERVL -5 459 1 401 226 54 0 chr3 81283485 81283578 -146241000 + L2 LINE L2 3138 3235 -37 21 82 0 0 chr3 81283600 81283649 -146240929 + AT_rich Low_complexity Low_complexity 1 49 0 508 266 97 0 chr3 81285069 81285193 -146239385 + MIR SINE MIR 49 184 -78 275 120 0 0 chr3 81285319 81285369 -146239209 - L1M4 LINE L1 -3218 2928 2879 309 299 8 45 chr3 81285369 81285503 -146239075 + MLT1J LTR MaLR 41 169 -342 22 35 0 0 chr3 81285767 81285796 -146238782 + AT_rich Low_complexity Low_complexity 1 29 0 711 264 38 4 chr3 81286373 81286608 -146237970 + L1MC4a LINE L1 5669 5911 -1897 225 159 0 0 chr3 81286621 81286665 -146237913 + (CA)n Simple_repeat Simple_repeat 2 45 0 1633 156 23 45 chr3 81287184 81287492 -146237086 + AluJo SINE Alu 2 302 -10 270 313 42 0 chr3 81287618 81287714 -146236864 + MIR SINE MIR 113 212 -50 1970 146 0 26 chr3 81288619 81288927 -146235651 - AluJo SINE Alu -1 311 12 468 263 12 58 chr3 81289178 81289293 -146235285 + L1MB8 LINE L1 5591 5691 -430 2282 148 39 5 chr3 81289293 81289726 -146234852 + L1MB8 LINE L1 5731 6178 0 468 263 12 58 chr3 81289726 81289850 -146234728 + L1MB8 LINE L1 5691 5819 -302 355 217 160 25 chr3 81290056 81290216 -146234362 - MIR SINE MIR -10 252 73 10289 109 0 1 chr3 81290333 81292458 -146232120 - L1PA5 LINE L1 -4 6150 4027 311 263 53 0 chr3 81292521 81292597 -146231981 - MIR SINE MIR -24 238 159 201 209 0 23 chr3 81292597 81292640 -146231938 - MIR SINE MIR -220 42 1 1139 93 134 69 chr3 81292680 81292896 -146231682 + MER30 DNA MER1_type 1 230 0 501 276 49 49 chr3 81293216 81293524 -146231054 + LTR33 LTR ERVL 161 468 -53 218 79 0 26 chr3 81294311 81294349 -146230229 + (TC)n Simple_repeat Simple_repeat 2 38 0 797 333 184 16 chr3 81294467 81295208 -146229370 + L2 LINE L2 2429 3313 0 217 325 34 43 chr3 81295208 81295325 -146229253 + MIR SINE MIR 47 162 -100 180 77 0 0 chr3 81295560 81295586 -146228992 + (TC)n Simple_repeat Simple_repeat 1 26 0 1103 169 0 0 chr3 81296141 81296307 -146228271 + FAM SINE Alu 1 166 -9 234 62 0 0 chr3 81296427 81296459 -146228119 + (TTA)n Simple_repeat Simple_repeat 3 34 0 766 319 72 27 chr3 81296701 81297036 -146227542 - MLT1I LTR MaLR 0 409 60 842 294 159 12 chr3 81297208 81297339 -146227239 - MLT1K LTR MaLR -19 569 459 663 57 0 0 chr3 81297339 81297427 -146227151 + (TC)n Simple_repeat Simple_repeat 1 88 0 842 294 159 12 chr3 81297427 81297710 -146226868 - MLT1K LTR MaLR -129 459 94 481 214 220 35 chr3 81298312 81298485 -146226093 - MIR SINE MIR -56 206 2 474 188 0 0 chr3 81299012 81299108 -146225470 + C-rich Low_complexity Low_complexity 3 98 0 2332 104 3 0 chr3 81299108 81299416 -146225162 - AluSq SINE Alu -4 309 1 1348 191 8 38 chr3 81299846 81300108 -146224470 + AluJo SINE Alu 1 254 -58 380 307 63 0 chr3 81300199 81300326 -146224252 - L2 LINE L2 -1 3271 3137 286 268 229 11 chr3 81301670 81301859 -146222719 - MIR SINE MIR -7 255 29 182 146 0 24 chr3 81302766 81302807 -146221771 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 380 277 105 96 chr3 81303386 81303718 -146220860 - L2 LINE L2 -87 3226 2892 3873 175 32 25 chr3 81303889 81304759 -146219819 - L1MB8 LINE L1 -1 6177 5302 279 162 26 26 chr3 81304759 81304876 -146219702 + (TA)n Simple_repeat Simple_repeat 2 118 0 2157 189 33 31 chr3 81304878 81305238 -146219340 - L1M4 LINE L1 -758 5388 5025 2195 112 27 0 chr3 81305238 81305534 -146219044 - AluSg SINE Alu -6 304 1 2157 189 33 31 chr3 81305534 81305744 -146218834 - L1M4 LINE L1 -1121 5025 4817 514 143 19 9 chr3 81306022 81306127 -146218451 + CT-rich Low_complexity Low_complexity 1 106 0 2892 138 9 40 chr3 81306841 81307370 -146217208 - LTR64 LTR ERVK 0 513 1 271 201 14 181 chr3 81307620 81307708 -146216870 + Charlie8 DNA MER1_type 1 57 -2360 1223 158 14 5 chr3 81307708 81307930 -146216648 + L1PB1 LINE L1 5928 6151 0 271 201 14 181 chr3 81307930 81307985 -146216593 + Charlie8 DNA MER1_type 57 120 -2297 258 269 0 0 chr3 81308236 81308303 -146216275 + MER52A LTR ERV1 1 67 -1688 3809 202 21 88 chr3 81308500 81309722 -146214856 + MER52A LTR ERV1 56 1196 -559 282 175 143 0 chr3 81309714 81309777 -146214801 + MER52A LTR ERV1 1684 1755 0 * 465 290 98 20 chr3 81311021 81311418 -146213160 + MER113 DNA MER1_type? 83 510 -11 285 174 0 81 chr3 81311615 81311701 -146212877 + CT-rich Low_complexity Low_complexity 3 81 0 39594 39 2 2 chr3 81312790 81318949 -146205629 + L1PA3 LINE L1 2 6155 0 328 287 19 9 chr3 81319011 81319119 -146205459 - MIR SINE MIR -76 186 78 403 338 77 70 chr3 81319170 81319442 -146205136 + L2 LINE L2 2999 3272 0 246 62 0 0 chr3 81321201 81321233 -146203345 + (A)n Simple_repeat Simple_repeat 1 32 0 1208 116 5 30 chr3 81321391 81321589 -146202989 + MER61E LTR ERV1 377 569 0 375 381 35 12 chr3 81322782 81322955 -146201623 - MIR SINE MIR -55 207 31 1831 201 58 41 chr3 81323313 81323730 -146200848 + MER65C LTR ERV1 1 424 -37 506 234 125 8 chr3 81324910 81325038 -146199540 + MLT1J LTR MaLR 11 153 -358 282 175 12 62 chr3 81325092 81325172 -146199406 + MLT1J LTR MaLR 406 481 -30 531 267 151 56 chr3 81325264 81325809 -146198769 - MLT1L LTR MaLR -25 563 1 280 245 101 36 chr3 81325855 81325994 -146198584 + L1MC5 LINE L1 7782 7929 -32 227 307 53 0 chr3 81326127 81326202 -146198376 - MLT1K LTR MaLR -41 547 469 473 293 32 6 chr3 81326485 81326642 -146197936 - MIR SINE MIR -65 197 37 189 292 0 79 chr3 81326760 81326849 -146197729 + MIR SINE MIR 1 82 -180 1757 161 13 23 chr3 81327153 81327458 -146197120 + AluJb SINE Alu 1 302 -10 1927 241 57 41 chr3 81327477 81327754 -146196824 - L1MC5 LINE L1 -26 7935 7664 7270 63 9 2 chr3 81327754 81328747 -146195831 + L1PA6 LINE L1 5145 6143 -11 1927 241 57 41 chr3 81328747 81328818 -146195760 - L1MC5 LINE L1 -297 7664 7596 2343 91 0 0 chr3 81328818 81329114 -146195464 - AluY SINE Alu -13 298 3 1927 241 57 41 chr3 81329114 81329570 -146195008 - L1MC5 LINE L1 -365 7596 7117 189 306 24 47 chr3 81330002 81330087 -146194491 + L2 LINE L2 3224 3306 -7 440 284 96 37 chr3 81330462 81330680 -146193898 + MIR SINE MIR 20 250 -12 695 201 36 52 chr3 81330875 81331069 -146193509 + L1ME2 LINE L1 5910 6100 -64 461 261 50 17 chr3 81331530 81331649 -146192929 + MIR SINE MIR 15 137 -125 959 295 31 31 chr3 81331732 81332122 -146192456 + LTR16C LTR ERVL 99 488 -3 231 299 13 0 chr3 81332142 81332219 -146192359 + MIR SINE MIR 173 250 -12 530 213 39 16 chr3 81332251 81332378 -146192200 + MER94 DNA DNA 2 131 -3 314 239 28 0 chr3 81332619 81332690 -146191888 + LTR67 LTR ERVL 481 553 -4 1667 240 86 27 chr3 81332724 81333199 -146191379 - MLT1D LTR MaLR 0 505 3 403 295 18 9 chr3 81333358 81333470 -146191108 - MER81 DNA DNA -1 113 1 439 266 22 54 chr3 81333807 81333991 -146190587 + MER5A DNA MER1_type 4 181 -8 1335 247 58 15 chr3 81333992 81334519 -146190059 + MLT1E LTR MaLR 11 593 0 419 292 215 10 chr3 81334538 81334747 -146189831 + MIR SINE MIR 5 256 -6 794 231 6 0 chr3 81335225 81335394 -146189184 - MER5A DNA MER1_type -19 170 1 223 328 31 55 chr3 81335472 81335600 -146188978 + L3 LINE CR1 1315 1439 -138 2331 15 48 4 chr3 81335600 81335871 -146188707 + AluYa5 SINE Alu 1 283 -28 828 210 33 6 chr3 81336056 81336237 -146188341 + L1MC3 LINE L1 6926 7111 -674 198 189 27 0 chr3 81336325 81336362 -146188216 + MIR SINE MIR 116 153 -109 799 319 87 6 chr3 81336391 81336723 -146187855 - LTR16A LTR ERVL -6 444 86 4483 127 54 15 chr3 81336814 81337549 -146187029 + L1MA5 LINE L1 5535 6298 -2 29 0 0 0 chr3 81337985 81338014 -146186564 + AT_rich Low_complexity Low_complexity 1 29 0 1039 25 0 0 chr3 81338032 81338150 -146186428 - L1PA2 LINE L1 -2 6153 6036 182 292 92 0 chr3 81338157 81338222 -146186356 + L2 LINE L2 3202 3272 0 1843 92 4 0 chr3 81338784 81339013 -146185565 + MER30 DNA MER1_type 1 230 0 482 267 143 0 chr3 81339123 81339284 -146185294 - MER63A DNA MER1_type -26 184 1 294 220 17 0 chr3 81341227 81341286 -146183292 + MER112 DNA MER1_type 2 61 -199 802 162 158 9 chr3 81341286 81341514 -146183064 + LTR54B LTR ERV1 235 496 -2 551 264 82 108 chr3 81341860 81342147 -146182431 - MLT1K LTR MaLR 0 588 295 1602 361 22 33 chr3 81342147 81342515 -146182063 - THE1B LTR MaLR 0 364 1 12260 92 11 11 chr3 81342515 81344095 -146180483 - THE1B-int LTR MaLR 0 1580 1 2379 127 33 30 chr3 81344095 81344458 -146180120 - THE1B LTR MaLR 0 364 1 382 284 88 10 chr3 81344458 81344560 -146180018 + MER81 DNA DNA 5 114 0 551 264 82 108 chr3 81344560 81344697 -146179881 - MLT1K LTR MaLR -289 299 172 331 270 12 117 chr3 81344824 81344987 -146179591 - MIR SINE MIR -108 154 9 2558 71 0 0 chr3 81346053 81346363 -146178215 + AluY SINE Alu 1 310 -1 387 309 88 11 chr3 81346549 81346730 -146177848 - MIR SINE MIR -48 214 20 263 271 14 14 chr3 81347725 81347795 -146176783 + L2 LINE L2 3202 3271 -1 248 270 22 56 chr3 81348485 81348574 -146176004 - L3b LINE CR1 -10 1573 1488 581 206 63 114 chr3 81348629 81348945 -146175633 + MLT1K LTR MaLR 272 571 -17 347 209 0 35 chr3 81349056 81349142 -146175436 + MLT1H LTR MaLR 8 90 -459 3220 223 51 40 chr3 81349260 81350126 -146174452 - Charlie1a DNA MER1_type -480 975 101 1000 260 25 5 chr3 81350818 81351022 -146173556 + MER63A DNA MER1_type 2 209 -1 451 183 32 0 chr3 81351315 81351408 -146173170 + LTR33A LTR ERVL 425 520 -3 1313 277 23 29 chr3 81351444 81351870 -146172708 - LTR16C LTR ERVL 0 491 33 264 311 101 32 chr3 81352184 81352318 -146172260 + L2 LINE L2 2829 2952 -320 207 0 0 0 chr3 81352318 81352341 -146172237 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 270 0 0 0 chr3 81352340 81352370 -146172208 + (CA)n Simple_repeat Simple_repeat 1 30 0 264 311 101 32 chr3 81352341 81352454 -146172124 + L2 LINE L2 2952 3062 -210 825 239 54 58 chr3 81352494 81352545 -146172033 + MIR SINE MIR 2 52 -210 3448 189 23 15 chr3 81352545 81353201 -146171377 - L1MB5 LINE L1 0 6174 5514 825 239 54 58 chr3 81353201 81353408 -146171170 + MIR SINE MIR 52 259 -3 237 301 11 54 chr3 81353464 81353557 -146171021 + L2 LINE L2 3182 3270 -2 1241 170 19 46 chr3 81353624 81353717 -146170861 + AluJo SINE Alu 22 116 -196 2267 109 0 0 chr3 81353717 81354020 -146170558 - AluSx SINE Alu -9 303 1 1241 170 19 46 chr3 81354020 81354185 -146170393 + AluJo SINE Alu 116 273 -39 1057 270 138 20 chr3 81354293 81354785 -146169793 + L1MC4 LINE L1 7481 8030 -12 571 309 97 0 chr3 81354886 81355103 -146169475 - MIR SINE MIR -23 239 2 309 302 126 39 chr3 81355150 81355332 -146169246 - MIR SINE MIR -17 245 48 1005 204 130 0 chr3 81355493 81355724 -146168854 - ORSL DNA AcHobo -14 261 1 1453 204 34 34 chr3 81356084 81356620 -146167958 + pTR5 LTR ERV1 741 1344 -1094 4326 128 53 37 chr3 81356636 81357309 -146167269 + LTR12 LTR ERV1 5 688 0 597 272 183 32 chr3 81357457 81357795 -146166783 - MLT1K LTR MaLR -42 546 158 1656 169 36 0 chr3 81357971 81358250 -146166328 + AluSx SINE Alu 1 289 -23 1630 142 75 18 chr3 81358266 81358547 -146166031 + AluJo SINE Alu 1 297 -15 195 333 46 11 chr3 81359739 81359826 -146164752 + L2 LINE L2 3106 3195 -77 1124 122 31 175 chr3 81361627 81362010 -146162568 - MER33 DNA MER1_type -3 321 1 21 0 0 0 chr3 81362080 81362101 -146162477 + AT_rich Low_complexity Low_complexity 1 21 0 268 264 16 16 chr3 81362182 81362303 -146162275 + L1ME4a LINE L1 5990 6110 -11 1989 120 18 3 chr3 81362570 81362897 -146161681 - AluSx SINE Alu 0 312 1 25 0 0 0 chr3 81362898 81362923 -146161655 + AT_rich Low_complexity Low_complexity 1 25 0 467 245 96 87 chr3 81363088 81363296 -146161282 + MIR SINE MIR 43 252 -10 21 0 0 0 chr3 81363433 81363454 -146161124 + AT_rich Low_complexity Low_complexity 1 21 0 225 248 133 18 chr3 81363633 81363746 -146160832 + MER103 DNA DNA 20 145 -21 632 236 98 81 chr3 81364121 81364185 -146160393 - MLT1E LTR MaLR 0 593 532 1756 124 12 0 chr3 81364185 81364434 -146160144 + AluSq SINE Alu 3 254 -59 632 236 98 81 chr3 81364434 81364805 -146159773 - MLT1E LTR MaLR -61 532 57 329 294 0 0 chr3 81365143 81365228 -146159350 + MIR SINE MIR 70 154 -108 835 279 62 50 chr3 81365242 81365545 -146159033 + L2 LINE L2 2697 3010 -303 1547 148 82 0 chr3 81365545 81365801 -146158777 - AluJb SINE Alu -12 300 24 835 279 62 50 chr3 81365801 81366072 -146158506 + L2 LINE L2 3010 3276 -37 779 188 16 0 chr3 81366451 81366579 -146157999 - FLAM_C SINE Alu -3 130 1 188 250 132 15 chr3 81368128 81368196 -146156382 + MIR SINE MIR 109 184 -78 2037 150 0 6 chr3 81368669 81368982 -146155596 - AluJb SINE Alu -1 311 1 189 250 0 23 chr3 81369316 81369360 -146155218 - L2 LINE L2 -92 3180 3138 710 190 0 25 chr3 81369698 81369843 -146154735 - FLAM_A SINE Alu 0 142 10 200 131 0 131 chr3 81369895 81369956 -146154622 - L2 LINE L2 -342 2971 2919 1081 217 147 41 chr3 81370162 81370577 -146154001 + MLT1C LTR MaLR 8 466 -1 287 231 39 48 chr3 81370587 81370691 -146153887 + L2 LINE L2 3150 3252 -61 537 277 112 74 chr3 81370850 81370944 -146153634 - LTR33A LTR ERVL -21 502 413 2278 109 3 0 chr3 81370944 81371248 -146153330 + AluSx SINE Alu 1 305 -7 537 277 112 74 chr3 81371248 81371661 -146152917 - LTR33A LTR ERVL -110 413 1 341 328 35 0 chr3 81371765 81371881 -146152697 + L2 LINE L2 3167 3286 -27 1069 199 40 0 chr3 81372282 81372483 -146152095 + MER20 DNA MER1_type 4 212 -7 25 0 0 0 chr3 81372490 81372515 -146152063 + AT_rich Low_complexity Low_complexity 1 25 0 270 326 89 55 chr3 81372532 81372768 -146151810 + MIR SINE MIR 8 251 -11 6542 122 140 115 chr3 81372860 81374520 -146150058 + pTR5 LTR ERV1 738 2438 0 2241 101 3 0 chr3 81374771 81375068 -146149510 - AluSp SINE Alu 0 313 16 3317 143 46 2 chr3 81375954 81376499 -146148079 + L1MB5 LINE L1 5531 6099 -75 419 294 28 57 chr3 81376567 81376744 -146147834 - MLT1K LTR MaLR -4 584 413 674 244 56 6 chr3 81376973 81377133 -146147445 + MIR SINE MIR 59 226 -36 1481 178 14 41 chr3 81377462 81377661 -146146917 - AluJo SINE Alu 0 313 124 2072 144 0 13 chr3 81377661 81377974 -146146604 + AluSx SINE Alu 1 309 -3 1481 178 14 41 chr3 81377974 81378095 -146146483 - AluJo SINE Alu -189 124 1 757 201 15 15 chr3 81378105 81378239 -146146339 - AluJo SINE Alu -177 135 2 533 294 119 0 chr3 81378239 81378440 -146146138 - MIR SINE MIR -36 226 2 431 291 148 9 chr3 81379413 81379623 -146144955 - MIR SINE MIR -19 243 5 2065 138 0 0 chr3 81379791 81380122 -146144456 + AluSx SINE Alu 1 331 0 195 129 0 0 chr3 81380271 81380302 -146144276 + (CA)n Simple_repeat Simple_repeat 2 32 0 250 265 160 30 chr3 81380651 81380765 -146143813 + MIR SINE MIR 27 152 -63 302 343 17 56 chr3 81380948 81381126 -146143452 + MER5A DNA MER1_type 16 186 -3 729 117 0 0 chr3 81381372 81381475 -146143103 - L1MB5 LINE L1 -13 6161 6059 287 307 65 33 chr3 81381476 81381629 -146142949 - MIR SINE MIR -59 203 46 292 229 16 0 chr3 81382111 81382172 -146142406 + MER94 DNA DNA 73 134 0 405 0 0 0 chr3 81382784 81382829 -146141749 + (TG)n Simple_repeat Simple_repeat 2 46 0 186 43 0 0 chr3 81383058 81383081 -146141497 + (GGAA)n Simple_repeat Simple_repeat 4 26 0 297 313 113 15 chr3 81383237 81383432 -146141146 + MIR SINE MIR 46 259 -3 187 303 67 59 chr3 81383464 81383583 -146140995 - MIR SINE MIR -142 120 1 653 253 61 25 chr3 81383802 81384000 -146140578 + LTR16C LTR ERVL 287 491 0 282 143 0 0 chr3 81384180 81384229 -146140349 + (TCC)n Simple_repeat Simple_repeat 1 49 0 1661 190 13 3 chr3 81384229 81384534 -146140044 - AluSx SINE Alu -4 308 1 2832 136 7 27 chr3 81384966 81385407 -146139171 - MSTB1 LTR MaLR 0 432 1 195 222 213 65 chr3 81385759 81385867 -146138711 - MIR SINE MIR -110 152 29 243 125 0 0 chr3 81386122 81386162 -146138416 + (CA)n Simple_repeat Simple_repeat 1 40 0 574 300 49 31 chr3 81386435 81386722 -146137856 - L2 LINE L2 0 3313 3022 2695 6 3 29 chr3 81387110 81387424 -146137154 - AluYa5 SINE Alu -5 306 1 251 289 118 0 chr3 81387689 81387765 -146136813 - MIR SINE MIR 0 262 178 310 319 101 14 chr3 81388112 81388250 -146136328 - HAL1 LINE L1 -91 2416 2267 425 338 126 0 chr3 81388988 81389210 -146135368 - MIR SINE MIR -1 261 12 872 254 107 84 chr3 81389292 81389789 -146134789 + MLT1J LTR MaLR 1 508 -3 600 245 122 21 chr3 81389871 81390157 -146134421 - HAL1 LINE L1 -137 2370 2056 200 222 191 0 chr3 81390191 81390254 -146134324 - MIR SINE MIR -71 191 117 402 222 135 32 chr3 81390352 81390478 -146134100 - MIR SINE MIR -108 154 16 239 316 35 9 chr3 81390784 81390898 -146133680 - MIR SINE MIR -119 143 27 762 249 77 29 chr3 81391666 81391875 -146132703 - MIR SINE MIR -23 239 21 1998 169 30 6 chr3 81392067 81392404 -146132174 + MER66B LTR ERV1 1 345 -141 511 179 12 0 chr3 81392860 81392944 -146131634 - AluJ/FLAM SINE Alu -225 87 3 394 311 68 0 chr3 81392945 81393077 -146131501 - MIR SINE MIR -99 163 23 183 229 95 76 chr3 81393136 81393241 -146131337 + MIR SINE MIR 44 150 -58 224 98 0 24 chr3 81393539 81393580 -146130998 + (CA)n Simple_repeat Simple_repeat 2 41 0 210 157 34 56 chr3 81394120 81394209 -146130369 + (TATAA)n Simple_repeat Simple_repeat 1 87 0 336 292 105 58 chr3 81394352 81394523 -146130055 - MLT1K LTR MaLR -223 365 187 26 0 0 0 chr3 81394711 81394737 -146129841 + AT_rich Low_complexity Low_complexity 1 26 0 878 221 53 0 chr3 81395170 81395360 -146129218 + MER3 DNA MER1_type 7 206 -3 235 211 0 39 chr3 81395320 81395372 -146129206 - MER3 DNA MER1_type -119 90 41 * 247 286 76 20 chr3 81396328 81396515 -146128063 + MLT1H1 LTR MaLR 107 306 -243 864 185 0 0 chr3 81396534 81396669 -146127909 - FLAM_C SINE Alu -8 135 1 466 196 174 54 chr3 81396678 81396862 -146127716 + MLT1H1 LTR MaLR 350 555 0 249 350 0 0 chr3 81396862 81396942 -146127636 - L2 LINE L2 -995 2319 2240 251 250 0 0 chr3 81396999 81397047 -146127531 + L2 LINE L2 3139 3186 -86 331 374 9 0 chr3 81397133 81397248 -146127330 + MIR SINE MIR 1 116 -146 575 319 9 71 chr3 81398203 81398429 -146126149 + MLT1K LTR MaLR 42 253 -335 1804 173 0 26 chr3 81398556 81398869 -146125709 + AluJb SINE Alu 1 305 -7 864 220 12 6 chr3 81398870 81399038 -146125540 + AluJb SINE Alu 135 303 -9 381 286 36 0 chr3 81399069 81399181 -146125397 + MLT1K LTR MaLR 471 586 -2 185 250 21 0 chr3 81399280 81399328 -146125250 - MIR SINE MIR -62 146 98 1019 263 75 57 chr3 81399379 81399470 -146125108 + MER58B DNA MER1_type 1 89 -2331 2114 125 3 0 chr3 81399470 81399792 -146124786 + AluSg SINE Alu 1 310 0 1019 263 75 57 chr3 81399792 81399985 -146124593 + MER58B DNA MER1_type 89 294 -2126 792 175 0 29 chr3 81399985 81400122 -146124456 + FLAM_C SINE Alu 1 133 0 1019 263 75 57 chr3 81400122 81400171 -146124407 + MER58B DNA MER1_type 294 341 0 288 275 37 95 chr3 81400633 81400822 -146123756 + MER5B DNA MER1_type 1 178 0 251 368 44 0 chr3 81401649 81401763 -146122815 - MIR SINE MIR -91 171 53 30 0 0 0 chr3 81402397 81402427 -146122151 + AT_rich Low_complexity Low_complexity 1 30 0 680 316 11 30 chr3 81402592 81402855 -146121723 - MIR SINE MIR 0 262 5 211 28 56 0 chr3 81403139 81403175 -146121403 + (TG)n Simple_repeat Simple_repeat 2 39 0 298 254 86 12 chr3 81404044 81404284 -146120294 + HAL1 LINE L1 1112 1387 -1120 1064 262 26 32 chr3 81404385 81404698 -146119880 + LTR16A LTR ERVL 106 416 -34 750 203 111 156 chr3 81404715 81404989 -146119589 + HAL1 LINE L1 1384 1622 -885 2184 136 0 0 chr3 81404989 81405290 -146119288 + AluSx SINE Alu 1 301 -11 750 203 111 156 chr3 81405290 81405572 -146119006 + HAL1 LINE L1 1622 1915 -592 209 85 0 64 chr3 81405577 81405624 -146118954 + (TAA)n Simple_repeat Simple_repeat 2 45 0 368 305 24 24 chr3 81405787 81405951 -146118627 + HAL1 LINE L1 2245 2408 -99 24 67 0 0 chr3 81406032 81406077 -146118501 + AT_rich Low_complexity Low_complexity 1 45 0 240 116 47 0 chr3 81406476 81406519 -146118059 - MER117 DNA MER1_type -106 91 47 326 204 19 78 chr3 81406610 81406713 -146117865 - LTR16B LTR ERVL 0 464 368 758 274 75 17 chr3 81406784 81407025 -146117553 - LTR16B LTR ERVL -202 262 8 3321 158 0 6 chr3 81407100 81407589 -146116989 + MER66B LTR ERV1 1 486 0 243 88 0 0 chr3 81408088 81408122 -146116456 + (CA)n Simple_repeat Simple_repeat 2 35 0 186 297 206 12 chr3 81408598 81408763 -146115815 - MIR SINE MIR -46 216 20 260 114 0 0 chr3 81408996 81409031 -146115547 + U6 snRNA snRNA 1 35 -72 255 31 0 0 chr3 81409593 81409625 -146114953 + (TTG)n Simple_repeat Simple_repeat 2 33 0 348 24 0 0 chr3 81410035 81410076 -146114502 + (CA)n Simple_repeat Simple_repeat 1 41 0 835 209 33 6 chr3 81410258 81410440 -146114138 - L1MC3 LINE L1 -673 7112 6926 231 302 139 29 chr3 81410688 81411062 -146113516 + L1ME LINE L1 5484 5898 -223 352 91 18 0 chr3 81411154 81411209 -146113369 - L1MD3 LINE L1 -1035 6960 6905 2038 141 3 3 chr3 81411383 81411695 -146112883 - AluSx SINE Alu 0 312 1 2196 132 0 0 chr3 81412512 81412822 -146111756 - AluSx SINE Alu -2 310 1 368 250 67 8 chr3 81413848 81413968 -146110610 + MIR SINE MIR 81 207 -55 717 254 69 60 chr3 81414438 81414772 -146109806 - LTR33A LTR ERVL -160 363 27 1214 184 210 8 chr3 81416429 81416727 -146107851 - MLT1F LTR MaLR 0 542 197 4812 158 55 41 chr3 81416745 81417592 -146106986 + MER21B LTR ERV1 3 861 -2 1650 198 8 36 chr3 81417612 81417935 -146106643 + L1MD3 LINE L1 7337 7651 -344 2205 112 0 3 chr3 81417935 81418230 -146106348 - AluSc SINE Alu -15 294 1 1650 198 8 36 chr3 81418230 81418264 -146106314 + L1MD3 LINE L1 7651 7684 -311 1013 171 7 0 chr3 81418283 81418557 -146106021 + GA-rich Low_complexity Low_complexity 1 277 0 1119 209 33 0 chr3 81418560 81418804 -146105774 + L1MD3 LINE L1 7670 7921 -74 1099 201 82 66 chr3 81418816 81419180 -146105398 - MLT1I LTR MaLR -27 419 10 288 306 0 12 chr3 81419238 81419323 -146105255 + T-rich Low_complexity Low_complexity 4 87 0 2483 65 7 0 chr3 81419434 81419740 -146104838 - AluY SINE Alu -3 308 1 359 287 49 25 chr3 81419980 81420102 -146104476 - L2 LINE L2 -7 3306 3182 244 241 63 13 chr3 81421070 81421149 -146103429 + L1ME3A LINE L1 5695 5777 -2031 3794 135 24 18 chr3 81421357 81421979 -146102599 - HSMAR2 DNA Mariner -2 1300 675 3802 122 14 2 chr3 81421979 81422543 -146102035 - HSMAR2 DNA Mariner -730 572 2 24 0 0 0 chr3 81422583 81422607 -146101971 + AT_rich Low_complexity Low_complexity 1 24 0 270 219 0 0 chr3 81422690 81422754 -146101824 + (TG)n Simple_repeat Simple_repeat 2 65 0 429 237 0 0 chr3 81422967 81423064 -146101514 - L1MA10 LINE L1 -2 6332 6236 1879 174 0 16 chr3 81423421 81423732 -146100846 - AluJb SINE Alu -6 306 1 369 271 69 41 chr3 81423735 81424031 -146100547 - L1MC4a LINE L1 -387 5734 5625 372 313 15 0 chr3 81424637 81424771 -146099807 + L1ME3A LINE L1 5783 5918 -252 1756 208 51 15 chr3 81424774 81425164 -146099414 - MLT1F LTR MaLR -4 538 135 482 236 143 12 chr3 81425573 81425734 -146098844 - MIR SINE MIR -21 241 60 2090 99 3 3 chr3 81425807 81426134 -146098444 - AluSx SINE Alu 0 327 1 322 186 17 0 chr3 81426298 81426357 -146098221 - MIR SINE MIR -24 238 179 226 299 44 111 chr3 81427098 81427369 -146097209 - L2 LINE L2 0 3272 3020 1899 136 3 3 chr3 81427391 81427677 -146096901 - AluSx SINE Alu -26 286 1 445 267 101 29 chr3 81427966 81428311 -146096267 + L1ME4a LINE L1 5591 5960 -161 30 77 0 0 chr3 81428401 81428466 -146096112 + AT_rich Low_complexity Low_complexity 1 65 0 470 344 6 16 chr3 81429085 81429268 -146095310 - MER5A DNA MER1_type -1 188 8 492 271 5 78 chr3 81430218 81430436 -146094142 + LTR67 LTR ERVL 328 529 -28 774 240 57 77 chr3 81430623 81431027 -146093551 - L1MC5 LINE L1 -48 7913 7518 811 183 0 8 chr3 81431047 81431178 -146093400 - FLAM_C SINE Alu -12 131 2 434 227 57 89 chr3 81431216 81431463 -146093115 - L1MC5 LINE L1 -431 7530 7292 296 234 31 78 chr3 81431582 81431710 -146092868 + L2 LINE L2 3182 3303 -10 255 321 58 44 chr3 81431777 81431914 -146092664 + L2 LINE L2 3112 3250 -22 596 259 136 74 chr3 81432296 81432648 -146091930 - MLT1K LTR MaLR -14 574 201 245 310 28 0 chr3 81433196 81433267 -146091311 - MER20B DNA MER1_type -643 140 68 295 351 32 3 chr3 81433915 81434059 -146090519 - MIR SINE MIR -55 153 41 1157 231 129 50 chr3 81437823 81437988 -146086590 + L2 LINE L2 2527 2678 -635 1243 171 38 9 chr3 81437988 81438198 -146086380 + MER20 DNA MER1_type 4 219 0 1157 231 129 50 chr3 81438198 81438462 -146086116 + L2 LINE L2 2678 3004 -309 280 228 50 59 chr3 81438471 81438572 -146086006 + MIR SINE MIR 155 254 -8 525 272 51 51 chr3 81438644 81438865 -146085713 + L2 LINE L2 3045 3268 -45 1198 201 28 5 chr3 81438865 81439079 -146085499 - MER20 DNA MER1_type 0 219 1 525 272 51 51 chr3 81439079 81439114 -146085464 + L2 LINE L2 3267 3301 -12 389 246 126 48 chr3 81440225 81440392 -146084186 + MIR SINE MIR 66 245 -17 234 158 26 0 chr3 81440385 81440423 -146084155 + L2 LINE L2 3218 3256 -16 * 197 91 30 0 chr3 81440702 81440735 -146083843 - L2 LINE L2 -9 3304 3271 289 283 11 22 chr3 81440760 81440852 -146083726 - MIR SINE MIR -11 251 161 25 51 0 0 chr3 81440856 81440895 -146083683 + AT_rich Low_complexity Low_complexity 1 39 0 374 241 85 43 chr3 81440895 81441036 -146083542 - MIR SINE MIR 0 262 116 413 265 53 67 chr3 81441488 81441735 -146082843 + MIR SINE MIR 2 239 -23 180 77 0 0 chr3 81442319 81442345 -146082233 + (TG)n Simple_repeat Simple_repeat 1 26 0 340 313 78 35 chr3 81442930 81443186 -146081392 - L2 LINE L2 -39 3274 3008 598 291 62 6 chr3 81443203 81443382 -146081196 + MIR SINE MIR 55 243 -19 1995 151 3 3 chr3 81444042 81444347 -146080231 - AluSx SINE Alu -7 305 1 195 129 0 0 chr3 81446185 81446216 -146078362 + (T)n Simple_repeat Simple_repeat 1 31 0 949 203 34 0 chr3 81446393 81446570 -146078008 - MER5A DNA MER1_type 0 189 7 234 189 67 56 chr3 81446683 81446773 -146077805 - MLT1K LTR MaLR -29 559 469 260 268 72 62 chr3 81447465 81447562 -146077016 + MIR SINE MIR 30 127 -135 2751 122 22 59 chr3 81447571 81448015 -146076563 + MSTA LTR MaLR 1 428 0 3651 128 2 0 chr3 81448015 81448547 -146076031 + MSTA-int LTR MaLR 1 533 -1118 1095 169 0 6 chr3 81448547 81448730 -146075848 + MSTA LTR MaLR 122 303 -125 6788 151 29 8 chr3 81448732 81449825 -146074753 + MSTA-int LTR MaLR 536 1651 0 2417 135 18 54 chr3 81449825 81450028 -146074550 + MSTA LTR MaLR 1 210 -218 1484 125 225 4 chr3 81450028 81450268 -146074310 - AluSg SINE Alu -7 293 1 2417 135 18 54 chr3 81450268 81450508 -146074070 + MSTA LTR MaLR 210 428 0 261 250 34 23 chr3 81450529 81450617 -146073961 + MIR SINE MIR 146 234 -28 251 111 0 0 chr3 81451354 81451390 -146073188 + (T)n Simple_repeat Simple_repeat 1 36 0 184 256 0 0 chr3 81451682 81451725 -146072853 + MIR SINE MIR 155 197 -65 7543 59 15 0 chr3 81452049 81453002 -146071576 - L1PA8 LINE L1 -14 6158 5203 405 0 0 0 chr3 81453917 81453962 -146070616 + (TG)n Simple_repeat Simple_repeat 2 46 0 222 62 0 0 chr3 81453998 81454030 -146070548 + (TA)n Simple_repeat Simple_repeat 1 32 0 225 0 0 0 chr3 81454037 81454062 -146070516 + (CA)n Simple_repeat Simple_repeat 1 25 0 1616 199 10 13 chr3 81454089 81454390 -146070188 - AluJo SINE Alu -12 300 1 201 247 206 10 chr3 81454540 81454637 -146069941 + L2 LINE L2 3198 3313 0 319 282 173 6 chr3 81454746 81454902 -146069676 + MIR SINE MIR 74 255 -7 1636 208 28 13 chr3 81454956 81455540 -146069038 + MER82 DNA MER2_type 1 652 -1 2394 65 3 3 chr3 81455705 81455996 -146068582 - AluY SINE Alu -20 291 1 1479 185 115 29 chr3 81456213 81456617 -146067961 - MER66A LTR ERV1 0 520 98 465 282 143 29 chr3 81457187 81457396 -146067182 - MIR SINE MIR -22 240 8 186 310 35 69 chr3 81461583 81461728 -146062850 + L3b LINE CR1 1320 1459 -124 1902 109 51 55 chr3 81462135 81462446 -146062132 - AluSx SINE Alu -2 310 1 261 337 83 6 chr3 81462635 81462816 -146061762 - MER117 DNA MER1_type 0 197 3 214 301 97 0 chr3 81463092 81463185 -146061393 - L2 LINE L2 -17 3255 3154 1982 121 0 4 chr3 81463241 81463546 -146061032 + AluSx SINE Alu 21 312 0 221 269 0 15 chr3 81463688 81463755 -146060823 - L2 LINE L2 -623 2691 2626 218 309 162 15 chr3 81463950 81464018 -146060560 - L2 LINE L2 -25 3247 3170 390 282 105 16 chr3 81464879 81465003 -146059575 + MIR SINE MIR 11 145 -117 392 217 53 173 chr3 81465036 81465262 -146059316 + MIR SINE MIR 45 243 -19 1824 166 27 0 chr3 81465387 81465688 -146058890 - 7SLRNA srpRNA srpRNA 0 320 12 769 151 99 17 chr3 81465745 81465917 -146058661 - MER53 DNA DNA 0 189 4 835 283 29 4 chr3 81517144 81517384 -146007194 + MIR SINE MIR 6 251 -11 284 326 31 23 chr3 81517469 81517598 -146006980 + MIR SINE MIR 117 246 -16 21 0 0 0 chr3 81517967 81517988 -146006590 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr3 81518349 81518374 -146006204 + (A)n Simple_repeat Simple_repeat 1 25 0 257 336 252 4 chr3 81519029 81519267 -146005311 - L2 LINE L2 0 3313 3017 10861 113 9 8 chr3 81519607 81521184 -146003394 + THE1A-int LTR MaLR 1 1580 0 909 138 6 6 chr3 81521184 81521344 -146003234 + THE1A LTR MaLR 1 160 -195 1238 285 54 41 chr3 81522937 81523527 -146001051 - L2 LINE L2 -3 3310 2707 190 200 25 0 chr3 81524009 81524049 -146000529 - L2 LINE L2 -46 3226 3186 267 406 43 31 chr3 81525084 81525409 -145999169 + L2 LINE L2 2914 3242 -30 606 269 72 0 chr3 81526287 81526454 -145998124 + MIR SINE MIR 68 246 -16 928 269 29 4 chr3 81526474 81526719 -145997859 + MIR SINE MIR 6 256 -6 298 318 30 23 chr3 81526796 81526928 -145997650 + MIR SINE MIR 114 246 -16 21 0 0 0 chr3 81527297 81527318 -145997260 + AT_rich Low_complexity Low_complexity 1 21 0 368 329 86 50 chr3 81527906 81528487 -145996091 - L2 LINE L2 -453 2861 2260 319 203 14 0 chr3 81528656 81528725 -145995853 - MLT1L LTR MaLR -196 419 350 24 0 0 0 chr3 81529811 81529835 -145994743 + AT_rich Low_complexity Low_complexity 1 24 0 488 197 121 0 chr3 81529835 81529967 -145994611 - L1MD2 LINE L1 -7 6352 6205 218 291 40 75 chr3 81529967 81530166 -145994412 - L2 LINE L2 -568 2746 2555 200 271 24 35 chr3 81530190 81530275 -145994303 - L2 LINE L2 -10 3262 3179 595 291 63 16 chr3 81530293 81530547 -145994031 - Charlie8 DNA MER1_type -2131 286 21 358 277 141 6 chr3 81530585 81530762 -145993816 - MLT1H1 LTR MaLR -6 536 336 407 260 45 45 chr3 81530803 81531073 -145993505 - MLT1H1 LTR MaLR -287 268 2 648 174 195 0 chr3 81531532 81531681 -145992897 - MER45A DNA AcHobo 0 178 1 330 250 71 27 chr3 81532170 81532282 -145992296 - MER91C DNA MER1_type -23 117 1 762 256 85 14 chr3 81532493 81532716 -145991862 - MIR SINE MIR 0 262 24 183 82 20 41 chr3 81533589 81533638 -145990940 + (TA)n Simple_repeat Simple_repeat 2 49 0 344 330 85 40 chr3 81533859 81534035 -145990543 + MER5A DNA MER1_type 3 186 -3 266 0 29 0 chr3 81534283 81534317 -145990261 + (TTG)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr3 81535158 81535180 -145989398 + AT_rich Low_complexity Low_complexity 1 22 0 207 0 0 0 chr3 81535395 81535418 -145989160 + (CAG)n Simple_repeat Simple_repeat 2 24 0 470 314 146 9 chr3 81535437 81535657 -145988921 - MIR SINE MIR -10 252 3 802 306 41 21 chr3 81538005 81538247 -145986331 - MIR SINE MIR -5 257 11 2278 36 0 0 chr3 81538259 81538533 -145986045 - L1PA4 LINE L1 0 6155 5882 3412 184 9 45 chr3 81538751 81539722 -145984856 + L1MB2 LINE L1 4670 5577 -594 1684 169 0 0 chr3 81539722 81539995 -145984583 + AluSx SINE Alu 25 297 -15 3412 184 9 45 chr3 81539995 81540333 -145984245 + L1MB2 LINE L1 5577 5925 -246 1657 126 0 47 chr3 81540333 81540646 -145983932 + L1MB2 LINE L1 5867 6169 -2 446 241 35 35 chr3 81540755 81540925 -145983653 + Charlie8 DNA MER1_type 56 225 -2192 180 0 0 0 chr3 81541480 81541500 -145983078 + (TGG)n Simple_repeat Simple_repeat 3 22 0 450 304 44 65 chr3 81542641 81542934 -145981644 - L1ME4a LINE L1 -85 6036 5750 2032 149 3 13 chr3 81543126 81543441 -145981137 - AluJb SINE Alu 0 312 1 752 194 16 141 chr3 81543508 81543756 -145980822 - MER20 DNA MER1_type -1 218 2 1356 264 35 15 chr3 81544795 81545295 -145979283 - L1ME3 LINE L1 -66 6096 5591 1876 189 0 0 chr3 81545569 81545875 -145978703 + AluJb SINE Alu 1 306 -6 2168 124 3 0 chr3 81546107 81546406 -145978172 - AluSx SINE Alu -12 300 1 2538 18 0 0 chr3 81546616 81546898 -145977680 - AluYb8 SINE Alu -3 315 34 27 29 0 0 chr3 81547602 81547636 -145976942 + AT_rich Low_complexity Low_complexity 1 34 0 522 188 101 72 chr3 81548163 81548371 -145976207 + MIR SINE MIR 49 262 0 492 320 34 60 chr3 81548402 81548636 -145975942 + MIR SINE MIR 35 262 0 268 330 22 0 chr3 81548686 81548777 -145975801 + L2 LINE L2 2550 2642 -672 333 284 62 58 chr3 81548783 81548996 -145975582 + L2 LINE L2 2795 3006 -266 3141 152 57 45 chr3 81550077 81550802 -145973776 - L1MB7 LINE L1 -19 6165 5433 226 283 50 25 chr3 81551992 81552112 -145972466 + MIR SINE MIR 140 262 0 186 337 63 0 chr3 81552142 81552237 -145972341 - MIR SINE MIR -73 189 89 1025 204 23 9 chr3 81552237 81552453 -145972125 + MER20 DNA MER1_type 1 219 0 207 250 0 0 chr3 81552749 81552793 -145971785 - L2 LINE L2 -2 3270 3227 1492 114 5 0 chr3 81552806 81553016 -145971562 - AluSp SINE Alu -2 311 101 1479 75 5 0 chr3 81553016 81553202 -145971376 - AluSp SINE Alu -126 187 1 22 0 0 0 chr3 81553947 81553969 -145970609 + AT_rich Low_complexity Low_complexity 1 22 0 213 259 9 18 chr3 81554371 81554483 -145970095 + CT-rich Low_complexity Low_complexity 1 111 0 384 274 139 56 chr3 81555532 81555784 -145968794 + L2 LINE L2 3041 3313 0 1713 192 3 17 chr3 81555789 81556086 -145968492 - AluJo SINE Alu -19 293 1 2339 94 3 7 chr3 81556213 81556511 -145968067 - AluSx SINE Alu -15 297 1 221 133 44 0 chr3 81558075 81558120 -145966458 + (TA)n Simple_repeat Simple_repeat 1 47 0 230 134 37 12 chr3 81558195 81558277 -145966301 + (TA)n Simple_repeat Simple_repeat 1 84 0 348 256 33 0 chr3 81558425 81558515 -145966063 + MER94 DNA DNA 38 130 -4 506 313 39 106 chr3 81558516 81559199 -145965379 - L2 LINE L2 -75 3197 2509 220 303 40 0 chr3 81560783 81560859 -145963719 + MIR SINE MIR 126 204 -58 382 274 53 18 chr3 81560863 81560976 -145963602 - L2 LINE L2 -5 3308 3192 525 236 45 45 chr3 81561178 81561356 -145963222 - MER5B DNA MER1_type 0 178 1 222 296 114 45 chr3 81562301 81562485 -145962093 + MIR SINE MIR 43 237 -25 228 136 0 45 chr3 81564361 81564405 -145960173 - MER75 DNA T2_type -4 500 459 1579 179 57 0 chr3 81564590 81564869 -145959709 - AluJo SINE Alu -17 295 1 192 40 0 0 chr3 81564908 81564933 -145959645 + (TG)n Simple_repeat Simple_repeat 2 26 0 615 249 135 11 chr3 81565006 81565191 -145959387 - MER77 LTR ERV1 -166 439 232 711 234 22 66 chr3 81565312 81565539 -145959039 - MER77 LTR ERV1 -388 217 1 809 306 42 70 chr3 81565542 81565556 -145959022 - L1MEc LINE L1 -5572 824 811 2367 148 7 53 chr3 81565556 81566009 -145958569 + Tigger2a DNA MER2_type 3 434 0 809 306 42 70 chr3 81566009 81566795 -145957783 - L1MEc LINE L1 -5585 811 46 630 281 43 8 chr3 81566822 81567057 -145957521 + MIR SINE MIR 19 261 -1 185 0 40 0 chr3 81567755 81567780 -145956798 + (TG)n Simple_repeat Simple_repeat 1 26 0 230 344 115 19 chr3 81568413 81568570 -145956008 + L2 LINE L2 2733 2904 -410 242 230 180 40 chr3 81568807 81568907 -145955671 + L2 LINE L2 3195 3308 -5 29 0 0 0 chr3 81569145 81569174 -145955404 + AT_rich Low_complexity Low_complexity 1 29 0 234 0 0 0 chr3 81569865 81569891 -145954687 + (CAAAA)n Simple_repeat Simple_repeat 4 29 0 2014 124 6 35 chr3 81569922 81570237 -145954341 + AluSx SINE Alu 1 306 -6 1064 183 77 15 chr3 81570274 81570547 -145954031 + MER33 DNA MER1_type 35 324 0 270 56 0 0 chr3 81571162 81571198 -145953380 + (TG)n Simple_repeat Simple_repeat 2 37 0 207 114 0 0 chr3 81571921 81571956 -145952622 + (A)n Simple_repeat Simple_repeat 1 35 0 1891 138 30 13 chr3 81571994 81572292 -145952286 - AluSx SINE Alu -9 303 1 415 250 0 0 chr3 81572486 81572590 -145951988 + MER58C DNA MER1_type 112 215 0 252 261 12 124 chr3 81572665 81572826 -145951752 - L2 LINE L2 -1 3312 3170 1891 125 82 0 chr3 81573149 81573428 -145951150 - AluSx SINE Alu -10 302 1 229 188 38 62 chr3 81573428 81573508 -145951070 - L1MEc LINE L1 -4001 2395 2318 1591 179 42 9 chr3 81573520 81573850 -145950728 - MLT1A2 LTR MaLR 0 374 34 1684 209 124 74 chr3 81574663 81575349 -145949229 + LTR41 LTR ERVL 9 728 -45 346 264 19 38 chr3 81575963 81576069 -145948509 - MIR3 SINE MIR -31 177 74 1528 215 27 46 chr3 81576300 81576775 -145947803 - L1ME3A LINE L1 -12 6158 5693 242 342 112 0 chr3 81576855 81577016 -145947562 + MIR SINE MIR 72 250 -12 498 301 43 5 chr3 81577547 81577852 -145946726 - MLT1I LTR MaLR 0 409 59 224 213 40 0 chr3 81578802 81578877 -145945701 + (TA)n Simple_repeat Simple_repeat 1 78 0 237 33 0 0 chr3 81579189 81579219 -145945359 + (TG)n Simple_repeat Simple_repeat 2 31 0 1040 222 88 7 chr3 81579233 81579530 -145945048 + MER5C DNA MER1_type 4 324 0 321 299 11 0 chr3 81579759 81579846 -145944732 - L2 LINE L2 0 3313 3226 225 0 0 0 chr3 81579922 81579947 -145944631 + (CA)n Simple_repeat Simple_repeat 1 25 0 730 291 73 83 chr3 81580510 81580977 -145943601 + L2 LINE L2 2851 3312 -1 608 228 15 7 chr3 81581240 81581376 -145943202 + MIR SINE MIR 87 223 -39 193 327 19 0 chr3 81581417 81581469 -145943109 + L2 LINE L2 3202 3254 -18 291 273 23 39 chr3 81582156 81582284 -145942294 - L1ME3A LINE L1 -532 5638 5513 509 223 18 36 chr3 81582301 81582467 -145942111 - MLT1F LTR MaLR -4 538 376 241 253 21 53 chr3 81582537 81582632 -145941946 - MER96 DNA MER1_type? -1 174 83 211 346 79 39 chr3 81584100 81584227 -145940351 + L2 LINE L2 3121 3252 -20 5503 145 14 28 chr3 81584271 81585265 -145939313 - L1MA6 LINE L1 -1 6299 5293 1694 186 11 0 chr3 81585265 81585550 -145939028 - AluJo SINE Alu -7 305 18 5503 145 14 28 chr3 81585550 81586592 -145937986 - L1MA6 LINE L1 -1007 5293 4283 452 242 39 0 chr3 81586594 81586722 -145937856 - MER53 DNA DNA -56 133 1 222 259 52 0 chr3 81586727 81586785 -145937793 + L2 LINE L2 3248 3308 -5 726 269 108 91 chr3 81587007 81587554 -145937024 - LTR67 LTR ERVL 0 557 2 1071 231 57 0 chr3 81587862 81588160 -145936418 + MER46C DNA MER2_type 2 316 -22 2104 152 0 7 chr3 81590995 81591305 -145933273 - AluSx SINE Alu -4 308 1 189 0 0 0 chr3 81593122 81593143 -145931435 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 198 0 0 0 chr3 81593987 81594009 -145930569 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 3673 70 0 0 chr3 81594010 81594480 -145930098 - L1PA7 LINE L1 -17 6137 5668 3791 80 0 2 chr3 81594480 81595021 -145929557 + L1P LINE L1 4751 5290 -856 284 296 161 32 chr3 81595073 81595259 -145929319 + MER102b DNA MER1_type 118 327 -14 26 0 0 0 chr3 81595497 81595523 -145929055 + AT_rich Low_complexity Low_complexity 1 26 0 306 148 0 0 chr3 81595652 81595706 -145928872 + (T)n Simple_repeat Simple_repeat 1 54 0 650 195 8 8 chr3 81596173 81596301 -145928277 - L2 LINE L2 -1 3312 3185 263 304 80 27 chr3 81596619 81596731 -145927847 + L2 LINE L2 3183 3300 -13 2253 118 0 7 chr3 81596782 81597086 -145927492 + AluSx SINE Alu 1 302 -10 285 263 21 42 chr3 81597427 81597522 -145927056 + L2 LINE L2 3180 3272 0 248 200 250 0 chr3 81597739 81597799 -145926779 - MIR SINE MIR -171 91 17 2828 10 0 0 chr3 81599204 81599513 -145925065 - AluYa5 SINE Alu -2 309 1 553 290 14 46 chr3 81599712 81599929 -145924649 - MIR SINE MIR -32 230 21 481 272 111 49 chr3 81600505 81600748 -145923830 + MIR SINE MIR 5 262 0 1777 203 48 9 chr3 81601612 81602045 -145922533 + L1ME1 LINE L1 5698 6147 -19 22 35 0 0 chr3 81602137 81602166 -145922412 + AT_rich Low_complexity Low_complexity 1 29 0 2134 209 92 25 chr3 81602439 81603070 -145921508 - L1ME3A LINE L1 -5 6165 5493 23 0 0 0 chr3 81603700 81603723 -145920855 + AT_rich Low_complexity Low_complexity 1 23 0 349 259 99 19 chr3 81603945 81604107 -145920471 - L1ME3A LINE L1 -234 5936 5762 2212 81 46 0 chr3 81604112 81604396 -145920182 - AluSg SINE Alu -13 297 1 1149 217 80 28 chr3 81604542 81604869 -145919709 + MER2 DNA MER2_type 1 344 0 1051 208 24 0 chr3 81604909 81605121 -145919457 - MER20 DNA MER1_type -1 218 2 208 139 0 0 chr3 81605509 81605545 -145919033 + (A)n Simple_repeat Simple_repeat 1 36 0 586 234 139 25 chr3 81606572 81606846 -145917732 + MER113 DNA MER1_type? 183 487 -34 211 139 23 0 chr3 81607174 81607217 -145917361 + T-rich Low_complexity Low_complexity 5 48 0 423 358 8 0 chr3 81607290 81607424 -145917154 - L2 LINE L2 -16 3256 3122 376 208 0 0 chr3 81608009 81608081 -145916497 + L2 LINE L2 3242 3313 0 405 333 43 0 chr3 81609173 81609335 -145915243 - MIR SINE MIR -11 251 83 2328 37 40 13 chr3 81610573 81610871 -145913707 + AluY SINE Alu 1 306 -5 304 283 240 30 chr3 81611526 81611830 -145912748 - L2 LINE L2 0 3313 2946 182 228 94 105 chr3 81611844 81612015 -145912563 + L2 LINE L2 3095 3263 -9 26 64 0 0 chr3 81612286 81612333 -145912245 + AT_rich Low_complexity Low_complexity 1 47 0 205 319 22 74 chr3 81612333 81612468 -145912110 - MER5A DNA MER1_type -1 188 61 250 355 65 0 chr3 81613347 81613440 -145911138 - L2 LINE L2 -1 3312 3214 676 197 33 0 chr3 81613987 81614109 -145910469 - FLAM_A SINE Alu -7 126 1 707 320 61 0 chr3 81614310 81614541 -145910037 - MIR SINE MIR -17 245 1 293 247 52 13 chr3 81614595 81614672 -145909906 + L2 LINE L2 3188 3267 -5 525 317 239 15 chr3 81614715 81615339 -145909239 + L2 LINE L2 2543 3312 -1 351 188 30 30 chr3 81615484 81615585 -145908993 - MIR SINE MIR -96 166 66 189 0 0 0 chr3 81616791 81616812 -145907766 + (TGGGGG)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr3 81617574 81617596 -145906982 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 81617950 81617971 -145906607 + AT_rich Low_complexity Low_complexity 1 21 0 781 293 5 9 chr3 81618439 81618654 -145905924 - MIR SINE MIR -39 223 10 2263 98 0 3 chr3 81618932 81619229 -145905349 + AluSg SINE Alu 1 296 -14 314 204 215 21 chr3 81619485 81619578 -145905000 - L2 LINE L2 -1 3312 3202 249 325 60 8 chr3 81619631 81619748 -145904830 - MLT1J LTR MaLR -193 318 196 198 0 0 0 chr3 81620573 81620595 -145903983 + (CA)n Simple_repeat Simple_repeat 2 23 0 261 250 0 62 chr3 81620613 81620709 -145903869 - L1MC4 LINE L1 -1339 6703 6614 285 161 0 0 chr3 81620711 81620754 -145903824 + (TA)n Simple_repeat Simple_repeat 2 47 -10 1893 99 0 0 chr3 81620754 81620997 -145903581 - AluSc SINE Alu -17 292 50 285 161 0 0 chr3 81620997 81621009 -145903569 + (TA)n Simple_repeat Simple_repeat 46 57 0 239 226 161 11 chr3 81621063 81621156 -145903422 - MLT1J LTR MaLR -334 177 71 1130 268 69 60 chr3 81621291 81621828 -145902750 - MLT1K LTR MaLR -45 543 2 240 152 0 0 chr3 81622855 81622901 -145901677 - Charlie7 DNA MER1_type -2509 103 58 211 345 11 35 chr3 81624031 81624118 -145900460 + MIR SINE MIR 21 105 -103 221 341 59 44 chr3 81624136 81624271 -145900307 + MER5A DNA MER1_type 26 162 -27 243 299 13 0 chr3 81624770 81624847 -145899731 - MIR SINE MIR -28 234 157 244 325 3 0 chr3 81625414 81625497 -145899081 - MIR SINE MIR -87 121 36 22 35 0 0 chr3 81626294 81626323 -145898255 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr3 81626688 81626714 -145897864 + AT_rich Low_complexity Low_complexity 1 26 0 279 268 104 32 chr3 81627474 81627694 -145896884 - L1ME LINE L1 -317 5804 5569 21 0 0 0 chr3 81627759 81627780 -145896798 + AT_rich Low_complexity Low_complexity 1 21 0 338 304 63 19 chr3 81627785 81627943 -145896635 - L1ME4a LINE L1 -205 5916 5752 293 298 19 10 chr3 81628342 81628446 -145896132 - MIR SINE MIR 0 262 158 284 230 135 0 chr3 81628522 81628596 -145895982 - MIR SINE MIR -106 156 73 28 29 0 0 chr3 81629179 81629214 -145895364 + AT_rich Low_complexity Low_complexity 1 35 0 911 202 12 61 chr3 81635824 81636071 -145888507 + MER106A DNA MER1_type 1 235 -1 669 246 77 6 chr3 81636215 81636398 -145888180 - MIR SINE MIR -33 229 34 279 325 81 0 chr3 81636663 81636786 -145887792 - MIR SINE MIR -49 213 81 216 97 0 0 chr3 81638714 81638745 -145885833 + (T)n Simple_repeat Simple_repeat 1 31 0 225 0 0 0 chr3 81639340 81639365 -145885213 + (T)n Simple_repeat Simple_repeat 1 25 0 518 254 32 0 chr3 81639605 81639731 -145884847 + MIR SINE MIR 78 207 -55 1599 171 36 46 chr3 81639731 81640124 -145884454 - Charlie5 DNA MER1_type 0 2624 2236 364 199 68 29 chr3 81640132 81640246 -145884332 - Charlie5 DNA MER1_type -2506 106 1 879 218 11 5 chr3 81641727 81641915 -145882663 + MER5A DNA MER1_type 1 189 0 376 259 36 9 chr3 81641958 81642070 -145882508 + MER103 DNA DNA 21 135 -31 1540 167 60 0 chr3 81642600 81642900 -145881678 - L1MC1 LINE L1 -8 6325 6008 442 298 0 0 chr3 81643723 81643844 -145880734 + MIR SINE MIR 110 230 -32 2067 108 31 0 chr3 81644717 81645003 -145879575 + AluSq SINE Alu 1 295 -18 420 71 0 0 chr3 81646117 81646173 -145878405 + (TG)n Simple_repeat Simple_repeat 2 57 0 250 254 32 0 chr3 81646269 81646332 -145878246 + CT-rich Low_complexity Low_complexity 3 67 0 267 222 148 0 chr3 81646332 81646413 -145878165 + MIR SINE MIR 44 136 -126 195 233 150 0 chr3 81647039 81647099 -145877479 + MIR SINE MIR 157 225 -37 203 225 67 108 chr3 81647697 81647775 -145876803 - MIR SINE MIR -97 165 92 838 252 37 0 chr3 81647775 81647989 -145876589 + MER58A DNA MER1_type 3 224 0 203 225 67 108 chr3 81647989 81648030 -145876548 - MIR SINE MIR -170 92 51 374 291 0 29 chr3 81648033 81648136 -145876442 + L2 LINE L2 3209 3308 -5 561 288 72 101 chr3 81648260 81648715 -145875863 - L2 LINE L2 -12 3260 2819 191 290 157 40 chr3 81648739 81649166 -145875412 - L2 LINE L2 -1035 2279 1803 275 331 110 67 chr3 81649177 81649657 -145874921 - L2 LINE L2 0 3313 2813 23 33 0 0 chr3 81651527 81651557 -145873021 + AT_rich Low_complexity Low_complexity 1 30 0 276 333 78 0 chr3 81652663 81652765 -145871813 + L2 LINE L2 3199 3308 -5 22 70 0 0 chr3 81653216 81653259 -145871319 + AT_rich Low_complexity Low_complexity 1 43 0 554 251 60 54 chr3 81654099 81654335 -145870243 + MIR SINE MIR 7 255 -7 21 0 0 0 chr3 81654429 81654450 -145870128 + AT_rich Low_complexity Low_complexity 1 21 0 494 178 33 0 chr3 81654478 81654568 -145870010 - L2 LINE L2 0 3313 3221 231 234 104 0 chr3 81655135 81655212 -145869366 + MIR SINE MIR 119 203 -59 3003 217 60 26 chr3 81655283 81656711 -145867867 - L1ME1 LINE L1 -4 6162 4699 540 345 84 4 chr3 81657243 81657469 -145867109 - MIR SINE MIR -14 248 5 465 217 43 87 chr3 81657670 81657808 -145866770 - L2 LINE L2 0 3313 3182 23 0 0 0 chr3 81658265 81658288 -145866290 + AT_rich Low_complexity Low_complexity 1 23 0 343 271 93 36 chr3 81658936 81659076 -145865502 + L1ME LINE L1 5496 5643 -478 786 165 6 71 chr3 81659319 81659351 -145865227 - FRAM SINE Alu -143 169 136 2556 88 11 14 chr3 81659351 81659705 -145864873 + THE1A LTR MaLR 1 353 -2 11361 98 9 6 chr3 81659707 81661282 -145863296 + THE1A-int LTR MaLR 1 1580 0 2802 68 3 3 chr3 81661282 81661637 -145862941 + THE1A LTR MaLR 1 355 0 786 165 6 71 chr3 81661637 81661770 -145862808 - FRAM SINE Alu -175 137 11 686 257 166 32 chr3 81661895 81662359 -145862219 + L1MC/D LINE L1 5255 5785 -1008 477 318 61 46 chr3 81663001 81663465 -145861113 + L1MC4a LINE L1 5488 5959 -162 2302 112 0 0 chr3 81664432 81664735 -145859843 - AluSx SINE Alu -9 303 1 181 397 0 0 chr3 81665249 81665307 -145859271 - L2 LINE L2 -9 3263 3206 206 194 14 0 chr3 81665786 81665858 -145858720 + (TA)n Simple_repeat Simple_repeat 2 74 0 492 304 60 6 chr3 81665902 81666070 -145858508 - LTR67 LTR ERVL -7 550 374 337 323 8 32 chr3 81666135 81666259 -145858319 - LTR67 LTR ERVL -324 233 113 189 0 0 0 chr3 81667690 81667711 -145856867 + (T)n Simple_repeat Simple_repeat 1 21 0 270 0 0 0 chr3 81668150 81668180 -145856398 + (TTTTTG)n Simple_repeat Simple_repeat 1 30 0 1798 141 60 0 chr3 81668377 81668661 -145855917 - AluSx SINE Alu -11 301 1 505 305 61 24 chr3 81668890 81669103 -145855475 + MIR SINE MIR 32 252 -10 220 111 44 0 chr3 81670138 81670183 -145854395 + (TTG)n Simple_repeat Simple_repeat 2 48 0 8530 60 4 5 chr3 81670192 81671200 -145853378 + LTR13 LTR ERVK 1 1007 0 2077 102 0 14 chr3 81671200 81671485 -145853093 - AluSx SINE Alu -31 281 1 960 219 9 36 chr3 81672133 81672352 -145852226 - MER20 DNA MER1_type -1 218 6 2243 108 0 0 chr3 81672545 81672833 -145851745 - AluSc SINE Alu -21 288 1 516 214 38 15 chr3 81673526 81673657 -145850921 + MIR SINE MIR 117 250 -12 1844 134 76 0 chr3 81673658 81673935 -145850643 - AluSg SINE Alu -12 298 1 26 339 0 0 chr3 81724489 81724601 -145799977 + GC_rich Low_complexity Low_complexity 1 112 0 40612 74 9 2 chr3 81724737 81730202 -145794376 + HERVL-A1 LTR ERVL 154 5654 0 2840 76 3 3 chr3 81730206 81730589 -145793989 + MLT2A1 LTR ERVL 5 387 -57 369 0 0 0 chr3 81730589 81730630 -145793948 + (TG)n Simple_repeat Simple_repeat 2 42 0 260 254 0 0 chr3 81730702 81730757 -145793821 + CT-rich Low_complexity Low_complexity 6 60 0 234 302 65 29 chr3 81731555 81731694 -145792884 - MER117 DNA MER1_type -51 146 3 321 308 37 0 chr3 81732362 81732469 -145792109 - MIR SINE MIR -60 148 38 1688 217 71 5 chr3 81732508 81732914 -145791664 - MER74A LTR ERVL 0 558 126 730 201 17 6 chr3 81733148 81733337 -145791241 + L1MB7 LINE L1 5981 6164 -2 433 301 102 0 chr3 81734594 81734760 -145789818 + MIR SINE MIR 71 253 -9 676 232 125 18 chr3 81735084 81735308 -145789270 + MIR SINE MIR 5 252 -10 1906 242 52 13 chr3 81735415 81735953 -145788625 - MLT1G LTR MaLR -1 589 31 180 0 0 0 chr3 81736011 81736031 -145788547 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2169 102 0 3 chr3 81736033 81736317 -145788261 - AluSp SINE Alu -30 283 1 2413 28 42 0 chr3 81736488 81736776 -145787802 - AluY SINE Alu -11 300 1 440 250 132 29 chr3 81737925 81738061 -145786517 - L2 LINE L2 0 3272 3123 21 36 0 0 chr3 81738832 81738860 -145785718 + AT_rich Low_complexity Low_complexity 1 28 0 333 298 89 0 chr3 81739106 81739230 -145785348 + L2 LINE L2 2949 3083 -230 248 280 10 40 chr3 81739283 81739383 -145785195 + MLT1J LTR MaLR 33 129 -382 595 273 120 28 chr3 81739425 81739641 -145784937 + MLT1J LTR MaLR 206 441 -70 284 167 19 0 chr3 81739797 81739851 -145784727 + MLT1J LTR MaLR 448 502 -9 256 274 48 32 chr3 81739865 81739989 -145784589 + L2 LINE L2 3118 3243 -70 337 270 0 0 chr3 81741450 81741550 -145783028 - LTR58 LTR ERV1 -230 449 350 209 354 46 0 chr3 81741725 81741790 -145782788 - L2 LINE L2 -67 3205 3138 601 237 130 12 chr3 81741937 81742106 -145782472 + MIR SINE MIR 40 228 -34 391 282 38 38 chr3 81742115 81742246 -145782332 - MIR SINE MIR -121 141 11 251 301 40 51 chr3 81742248 81742424 -145782154 + MIR SINE MIR 79 252 -10 21 0 0 0 chr3 81742424 81742445 -145782133 + AT_rich Low_complexity Low_complexity 1 21 0 2188 106 0 42 chr3 81742938 81743250 -145781328 + AluSp SINE Alu 1 299 -14 977 48 0 0 chr3 81744529 81744653 -145779925 - L1PA5 LINE L1 -3 6151 6028 235 0 28 28 chr3 81746175 81746211 -145778367 + (TTTTTG)n Simple_repeat Simple_repeat 1 36 0 201 94 0 0 chr3 81746210 81746242 -145778336 + (GA)n Simple_repeat Simple_repeat 1 32 0 * 371 227 0 0 chr3 81746745 81746811 -145777767 - L2 LINE L2 0 3313 3248 3732 113 56 94 chr3 81747046 81747862 -145776716 + LTR1 LTR ERV1 1 785 0 523 338 0 0 chr3 81748802 81748935 -145775643 - L2 LINE L2 -1 3271 3139 413 252 38 76 chr3 81749520 81749782 -145774796 - L1MC4a LINE L1 -1962 5915 5664 801 261 89 27 chr3 81749856 81750514 -145774064 - L1MEc LINE L1 -3525 2690 2023 278 290 41 18 chr3 81750682 81750851 -145773727 - L1MEc LINE L1 -4594 1802 1630 308 267 75 33 chr3 81751903 81752023 -145772555 - MIR SINE MIR -64 144 20 644 294 92 28 chr3 81752200 81752636 -145771942 - MLT1H LTR MaLR 0 549 86 332 228 39 79 chr3 81753418 81753545 -145771033 - MIR SINE MIR -79 129 7 24630 38 5 1 chr3 81753637 81757459 -145767119 - L1PA4 LINE L1 -2 6153 2308 1412 136 67 105 chr3 81757638 81758028 -145766550 - THE1C LTR MaLR 0 375 1 1824 175 120 31 chr3 81759184 81759642 -145764936 + MLT1D LTR MaLR 1 499 -6 293 267 311 0 chr3 81759965 81760126 -145764452 + MIR SINE MIR 29 239 -23 258 81 0 0 chr3 81760126 81760163 -145764415 + (ATG)n Simple_repeat Simple_repeat 2 38 0 397 291 116 40 chr3 81760178 81760377 -145764201 + MIR SINE MIR 45 258 -4 376 306 29 35 chr3 81760992 81761165 -145763413 - MLT1K LTR MaLR -134 454 283 2279 66 7 3 chr3 81761975 81762292 -145762286 + AluY SINE Alu 1 318 0 26418 40 2 10 chr3 81762542 81766763 -145757815 - L1PA5 LINE L1 -2 6152 1945 425 226 20 0 chr3 81766775 81766877 -145757701 - MER103 DNA DNA -49 117 14 239 111 0 22 chr3 81767664 81767709 -145756869 + (TAA)n Simple_repeat Simple_repeat 1 44 0 311 380 5 54 chr3 81767711 81767932 -145756646 - MIR SINE MIR 0 262 53 1331 59 0 0 chr3 81769243 81769412 -145755166 + L1PA4 LINE L1 5987 6155 0 2298 87 0 17 chr3 81770149 81770447 -145754131 + AluY SINE Alu 1 293 -18 449 162 14 0 chr3 81770759 81770833 -145753745 - MER58A DNA MER1_type -28 79 5 2180 129 6 0 chr3 81772205 81772516 -145752062 - AluSq SINE Alu 0 313 1 2190 138 83 23 chr3 81772604 81773001 -145751577 - Tigger2a DNA MER2_type -5 429 9 282 200 24 35 chr3 81773326 81773411 -145751167 + CT-rich Low_complexity Low_complexity 1 84 0 1003 123 0 11 chr3 81775024 81775203 -145749375 + (TTCC)n Simple_repeat Simple_repeat 3 179 0 418 289 195 0 chr3 81775844 81776034 -145748544 - MIR SINE MIR -34 228 2 1950 131 17 13 chr3 81776441 81776739 -145747839 + AluSx SINE Alu 1 299 -13 22 0 0 0 chr3 81777173 81777195 -145747383 + AT_rich Low_complexity Low_complexity 1 22 0 420 228 106 33 chr3 81777433 81777613 -145746965 - MIR SINE MIR -4 258 66 4697 154 26 15 chr3 81777651 81778520 -145746058 + L1MB4 LINE L1 5284 6162 -18 219 288 0 0 chr3 81778821 81778880 -145745698 + L2 LINE L2 3250 3308 -5 471 301 36 12 chr3 81780142 81780308 -145744270 + LTR16C LTR ERVL 320 489 -2 469 311 67 69 chr3 81780594 81781128 -145743450 - L2 LINE L2 -649 2665 2133 2318 106 0 0 chr3 81781533 81781835 -145742743 + AluSx SINE Alu 2 303 -9 1755 260 78 55 chr3 81781898 81782499 -145742079 - MLT1E3 LTR MaLR -2 622 8 656 311 107 57 chr3 81783273 81783778 -145740800 + MLT1K LTR MaLR 2 531 -57 277 244 78 102 chr3 81784447 81784652 -145739926 + MLT1K LTR MaLR 378 577 -11 519 276 45 32 chr3 81784654 81784810 -145739768 - MER117 DNA MER1_type -29 168 11 1686 184 46 64 chr3 81785083 81785522 -145739056 + MSTB1 LTR MaLR 1 431 -1 374 233 116 98 chr3 81785933 81786148 -145738430 - LTR16A1 LTR ERVL -7 450 232 1245 193 55 39 chr3 81786291 81786566 -145738012 + MLT2D LTR ERVL 91 373 -41 459 0 0 0 chr3 81786566 81786617 -145737961 + (CA)n Simple_repeat Simple_repeat 1 51 0 1245 193 55 39 chr3 81786617 81786652 -145737926 + MLT2D LTR ERVL 373 406 -8 411 286 58 13 chr3 81787020 81787174 -145737404 + MIR SINE MIR 28 188 -74 336 321 69 19 chr3 81787235 81787394 -145737184 - MIR SINE MIR -32 230 64 218 213 106 0 chr3 81788434 81788481 -145736097 + MIR SINE MIR 110 162 -46 711 122 12 2 chr3 81788647 81788816 -145735762 - MER2 DNA MER2_type -134 211 1 40 37 0 0 chr3 81791786 81791840 -145732738 + AT_rich Low_complexity Low_complexity 1 54 0 279 134 62 38 chr3 81791846 81792142 -145732436 + (TATAA)n Simple_repeat Simple_repeat 1 303 0 56 39 0 0 chr3 81792154 81792231 -145732347 + AT_rich Low_complexity Low_complexity 1 77 0 184 111 52 59 chr3 81792542 81792677 -145731901 + (TTATA)n Simple_repeat Simple_repeat 2 135 0 21 57 0 0 chr3 81793919 81793954 -145730624 + AT_rich Low_complexity Low_complexity 1 35 0 1626 222 97 17 chr3 81794070 81794534 -145730044 - MLT1D LTR MaLR 0 505 5 2029 128 3 26 chr3 81794758 81795062 -145729516 - AluSg SINE Alu -1 309 13 1359 207 131 52 chr3 81795102 81795469 -145729109 - MSTD LTR MaLR 0 396 1 367 298 24 40 chr3 81795582 81795706 -145728872 - L2 LINE L2 -33 3280 3159 629 283 26 26 chr3 81795706 81795897 -145728681 + MIR SINE MIR 51 241 -21 245 235 0 0 chr3 81796075 81796126 -145728452 + (CTA)n Simple_repeat Simple_repeat 3 53 0 536 311 50 27 chr3 81796129 81796351 -145728227 - MIR SINE MIR -7 255 29 210 302 0 0 chr3 81796540 81796593 -145727985 - L2 LINE L2 0 3272 3220 265 348 11 11 chr3 81796862 81796951 -145727627 + MIR SINE MIR 4 92 -170 294 194 0 0 chr3 81797064 81797126 -145727452 + (CAT)n Simple_repeat Simple_repeat 2 63 0 2246 119 3 0 chr3 81798294 81798605 -145725973 + AluSx SINE Alu 1 312 0 401 235 113 44 chr3 81798685 81798847 -145725731 + L1MC4a LINE L1 5562 5678 -443 525 26 51 26 chr3 81798847 81798925 -145725653 + MADE1 DNA Mariner 1 80 0 401 235 113 44 chr3 81798925 81799061 -145725517 + L1MC4a LINE L1 5678 5803 -318 1743 197 0 0 chr3 81799261 81799565 -145725013 + AluJo SINE Alu 6 309 -3 650 134 253 124 chr3 81800094 81800288 -145724290 - MER20 DNA MER1_type 0 219 1 670 260 27 97 chr3 81802114 81802414 -145722164 - MER102a DNA MER1_type -6 324 46 691 195 88 66 chr3 81802419 81802737 -145721841 + L1MC5 LINE L1 7610 7934 -27 352 264 11 33 chr3 81803684 81803775 -145720803 - L2 LINE L2 -2 3270 3182 219 69 0 0 chr3 81803990 81804019 -145720559 + (TC)n Simple_repeat Simple_repeat 2 30 0 180 111 0 0 chr3 81805064 81805091 -145719487 + (CATATA)n Simple_repeat Simple_repeat 3 29 0 216 0 0 0 chr3 81805097 81805121 -145719457 + (TG)n Simple_repeat Simple_repeat 2 25 0 318 323 79 0 chr3 81806236 81806363 -145718215 - MIR SINE MIR -98 164 28 245 256 106 11 chr3 81806404 81806506 -145718072 - MIR SINE MIR -63 145 44 2698 176 68 2 chr3 81806731 81807213 -145717365 - MLT2B1 LTR ERVL 0 520 7 408 350 78 23 chr3 81807615 81807832 -145716746 - L2 LINE L2 -22 3250 3022 924 98 23 0 chr3 81808060 81808193 -145716385 + MER20 DNA MER1_type 66 201 -18 249 322 101 10 chr3 81808533 81808732 -145715846 - L2 LINE L2 -834 2480 2264 1119 241 53 7 chr3 81808776 81809075 -145715503 + MER102b DNA MER1_type 1 313 -28 1047 280 61 21 chr3 81809532 81809768 -145714810 + L2 LINE L2 2911 3169 -144 325 213 12 12 chr3 81809768 81809848 -145714730 - MER116 DNA Mariner 0 80 1 1047 280 61 21 chr3 81809848 81809986 -145714592 + L2 LINE L2 3169 3300 -13 249 286 0 25 chr3 81811154 81811320 -145713258 + MIR SINE MIR 1 237 -25 225 315 102 0 chr3 81811485 81811593 -145712985 + L2 LINE L2 3190 3308 -5 1054 138 41 60 chr3 81813042 81813260 -145711318 + MER20 DNA MER1_type 6 219 0 185 56 0 56 chr3 81814570 81814606 -145709972 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 26 50 0 0 chr3 81814773 81814813 -145709765 + AT_rich Low_complexity Low_complexity 1 40 0 185 233 23 0 chr3 81816747 81816790 -145707788 - L2 LINE L2 -8 3305 3262 208 215 231 31 chr3 81816950 81817015 -145707563 - MIR SINE MIR -112 150 73 734 254 37 0 chr3 81817066 81817255 -145707323 - MIR SINE MIR -21 241 46 848 204 56 52 chr3 81817567 81817836 -145706742 - L1MD2 LINE L1 -2 6357 6088 206 254 45 0 chr3 81819516 81819583 -145704995 + CT-rich Low_complexity Low_complexity 2 71 0 219 114 0 0 chr3 81820081 81820116 -145704462 + (A)n Simple_repeat Simple_repeat 1 35 0 489 183 19 19 chr3 81820809 81820913 -145703665 - L2 LINE L2 -18 3295 3192 203 249 9 9 chr3 81821013 81821126 -145703452 + CT-rich Low_complexity Low_complexity 1 113 0 251 257 122 47 chr3 81821202 81821350 -145703228 + MIR SINE MIR 2 160 -102 246 116 0 0 chr3 81821449 81821492 -145703086 + (TTA)n Simple_repeat Simple_repeat 2 44 0 193 417 0 0 chr3 81822539 81822599 -145701979 - L2 LINE L2 -94 3178 3119 195 42 0 0 chr3 81822791 81822815 -145701763 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 22 0 0 0 chr3 81823321 81823343 -145701235 + AT_rich Low_complexity Low_complexity 1 22 0 369 246 254 0 chr3 81826157 81826295 -145698283 + MER96 DNA MER1_type? 1 173 -2 24 0 0 0 chr3 81826319 81826343 -145698235 + AT_rich Low_complexity Low_complexity 1 24 0 1121 193 52 0 chr3 81826354 81826567 -145698011 + MER58A DNA MER1_type 1 224 0 212 284 164 0 chr3 81826600 81826667 -145697911 + MIR SINE MIR 34 111 -151 599 191 184 0 chr3 81826671 81826823 -145697755 - MER63A DNA MER1_type -1 209 30 2294 151 0 3 chr3 81826855 81827220 -145697358 + MER47A DNA MER2_type 3 366 0 571 245 67 51 chr3 81827292 81827561 -145697017 + LTR16A1 LTR ERVL 48 387 -70 431 236 86 86 chr3 81827561 81827735 -145696843 - MER96 DNA MER1_type 0 175 2 571 245 67 51 chr3 81827735 81827808 -145696770 + LTR16A1 LTR ERVL 387 457 0 387 251 130 67 chr3 81828500 81828549 -145696029 + L2 LINE L2 3075 3119 -194 2327 86 0 0 chr3 81828549 81828852 -145695726 - AluY SINE Alu -8 303 1 387 251 130 67 chr3 81828852 81829025 -145695553 + L2 LINE L2 3119 3311 -2 184 241 0 35 chr3 81829054 81829112 -145695466 + L2 LINE L2 3258 3313 0 241 302 111 11 chr3 81830061 81830178 -145694400 + MIR SINE MIR 16 144 -67 871 258 16 6 chr3 81830264 81830446 -145694132 - MIR SINE MIR -67 195 12 183 80 0 0 chr3 81831364 81831389 -145693189 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 431 269 113 7 chr3 81832191 81832332 -145692246 - MIR SINE MIR -9 253 98 505 281 63 54 chr3 81834233 81834454 -145690124 - MIR SINE MIR -10 252 30 28 0 0 0 chr3 81835273 81835301 -145689277 + AT_rich Low_complexity Low_complexity 1 28 0 999 309 101 19 chr3 81835402 81835878 -145688700 - MLT1K LTR MaLR -72 516 2 205 241 72 12 chr3 81836093 81836176 -145688402 + MIR SINE MIR 113 200 -62 672 303 37 18 chr3 81836705 81836923 -145687655 - MIR SINE MIR -1 261 40 233 326 11 0 chr3 81837057 81837146 -145687432 + MIR SINE MIR 123 212 -50 21 36 0 0 chr3 81838204 81838232 -145686346 + AT_rich Low_complexity Low_complexity 1 28 0 200 35 35 0 chr3 81839405 81839434 -145685144 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 203 277 80 80 chr3 81839481 81839593 -145684985 + MIR SINE MIR 33 144 -64 256 109 18 36 chr3 81839693 81839748 -145684830 - L1MA3 LINE L1 0 6305 6252 204 67 0 0 chr3 81840334 81840364 -145684214 + (T)n Simple_repeat Simple_repeat 1 30 0 181 260 13 39 chr3 81840526 81840603 -145683975 + L2 LINE L2 3168 3242 -71 318 346 75 0 chr3 81840645 81840778 -145683800 - MIR SINE MIR -3 259 117 452 312 97 59 chr3 81841530 81842122 -145682456 + L2 LINE L2 2429 3037 -235 4509 155 23 13 chr3 81842135 81842910 -145681668 - LTR39 LTR ERV1 0 783 1 581 312 59 5 chr3 81843017 81843219 -145681359 + MIR SINE MIR 49 261 -1 1589 269 80 28 chr3 81843352 81843704 -145680874 - MLT1E LTR MaLR -26 567 176 1904 154 0 0 chr3 81843704 81843984 -145680594 + AluJo SINE Alu 6 285 -27 1589 269 80 28 chr3 81843984 81844166 -145680412 - MLT1E LTR MaLR -417 176 5 2264 111 0 3 chr3 81845797 81846104 -145678474 - AluSg SINE Alu -4 306 1 660 298 58 33 chr3 81846365 81847116 -145677462 - L1ME3A LINE L1 -227 5943 5185 1964 162 0 10 chr3 81847588 81847885 -145676693 - AluJb SINE Alu -18 294 1 240 349 85 9 chr3 81849187 81849293 -145675285 - MIR SINE MIR -62 146 33 596 288 162 18 chr3 81849417 81849862 -145674716 - Tigger8 DNA MER2_type -133 533 25 764 237 84 63 chr3 81850430 81850717 -145673861 - MER102b DNA MER1_type 0 341 49 290 211 0 0 chr3 81850995 81851047 -145673531 - L3 LINE CR1 -72 1505 1454 231 219 0 0 chr3 81851170 81851234 -145673344 - L1MC4 LINE L1 -1339 6703 6640 * 233 227 45 23 chr3 81851218 81851306 -145673272 + L1MC4 LINE L1 6614 6703 -1339 211 91 23 23 chr3 81851313 81851357 -145673221 + (TA)n Simple_repeat Simple_repeat 2 45 0 254 49 0 49 chr3 81851496 81851537 -145673041 + (TTTTG)n Simple_repeat Simple_repeat 4 42 0 1689 161 70 7 chr3 81851802 81852088 -145672490 - AluJb SINE Alu -8 304 1 286 306 63 24 chr3 81853474 81853726 -145670852 - L1MC4 LINE L1 -1879 5929 5668 272 287 46 0 chr3 81854170 81854257 -145670321 + L1MC/D LINE L1 5611 5701 -2107 339 236 47 38 chr3 81854289 81854419 -145670159 + L1MC4 LINE L1 1995 6983 -1339 594 269 192 29 chr3 81854941 81855316 -145669262 - L2 LINE L2 -6 3307 2872 1127 218 48 13 chr3 81855847 81856159 -145668419 + MER33 DNA MER1_type 1 323 -1 342 125 0 0 chr3 81856175 81856231 -145668347 + MER58 DNA MER1_type 50 105 -236 2103 123 3 16 chr3 81856231 81856541 -145668037 + AluSx SINE Alu 1 306 -6 671 216 78 10 chr3 81856587 81856791 -145667787 + MER58 DNA MER1_type 2203 2420 0 233 285 95 44 chr3 81856802 81856939 -145667639 + MIR SINE MIR 49 192 -70 197 224 41 0 chr3 81859212 81859261 -145665317 - MIR SINE MIR -124 138 88 351 308 169 6 chr3 81859403 81859575 -145665003 + MIR SINE MIR 7 206 -56 22 56 0 0 chr3 81859622 81859658 -145664920 + AT_rich Low_complexity Low_complexity 1 36 0 1292 73 5 54 chr3 81859667 81859871 -145664707 + L1PB1 LINE L1 5958 6151 0 2621 203 74 20 chr3 81860225 81860820 -145663758 - MER82 DNA MER2_type 0 653 27 2416 81 3 0 chr3 81861802 81862109 -145662469 + AluSg1 SINE Alu 1 308 -1 2053 118 35 0 chr3 81862123 81862251 -145662327 + AluSg SINE Alu 1 123 -187 240 35 0 0 chr3 81862251 81862280 -145662298 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 2053 118 35 0 chr3 81862280 81862440 -145662138 + AluSg SINE Alu 123 299 -11 2071 150 26 16 chr3 81863514 81863900 -145660678 - MLT1B LTR MaLR 0 390 1 2079 218 67 24 chr3 81864066 81864616 -145659962 - MER119 DNA MER1_type -8 575 2 2140 87 0 4 chr3 81864663 81864940 -145659638 - AluSq SINE Alu 0 313 38 466 173 0 0 chr3 81865023 81865104 -145659474 - L1MC1 LINE L1 -248 6085 6005 210 143 0 0 chr3 81865936 81865971 -145658607 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 26 0 0 0 chr3 81867268 81867294 -145657284 + AT_rich Low_complexity Low_complexity 1 26 0 354 23 0 0 chr3 81869591 81869634 -145654944 + (CA)n Simple_repeat Simple_repeat 2 44 0 518 256 192 20 chr3 81869780 81869983 -145654595 + MIR SINE MIR 25 262 0 391 195 11 0 chr3 81871338 81871425 -145653153 + MER103 DNA DNA 20 107 -59 213 121 0 0 chr3 81871462 81871495 -145653083 + (TG)n Simple_repeat Simple_repeat 2 34 0 297 339 115 15 chr3 81872330 81872776 -145651802 - MLT1K LTR MaLR -66 522 3 5738 121 91 17 chr3 81873044 81873621 -145650957 + Tigger3b DNA MER2_type 1 681 -2347 2008 144 0 3 chr3 81873621 81873933 -145650645 - AluSx SINE Alu -1 311 1 5738 121 91 17 chr3 81873933 81874332 -145650246 + Tigger3b DNA MER2_type 681 1049 -182 963 278 121 14 chr3 81874481 81874852 -145649726 - MLT1K LTR MaLR -58 530 120 286 244 92 46 chr3 81874944 81875075 -145649503 + L2 LINE L2 2994 3130 -183 926 96 6 0 chr3 81875088 81875245 -145649333 + (TTCTCC)n Simple_repeat Simple_repeat 5 162 0 24 0 0 0 chr3 81875359 81875383 -145649195 + AT_rich Low_complexity Low_complexity 1 24 0 2028 189 24 5 chr3 81876189 81876565 -145648013 - MER58D DNA MER1_type -3 383 1 474 246 70 41 chr3 81876568 81876739 -145647839 + MLT1J LTR MaLR 1 176 -335 3179 106 9 9 chr3 81876900 81877292 -145647286 + MLT2A1 LTR ERVL 1 395 -49 342 0 0 0 chr3 81877292 81877330 -145647248 + (TA)n Simple_repeat Simple_repeat 2 39 0 3179 106 9 9 chr3 81877330 81877381 -145647197 + MLT2A1 LTR ERVL 394 444 0 39163 77 11 3 chr3 81877386 81882383 -145642195 + HERVL-A1 LTR ERVL 1 5037 -617 434 306 29 35 chr3 81882535 81882708 -145641870 + MLT1K LTR MaLR 283 454 -134 259 260 58 39 chr3 81882822 81882926 -145641652 + MLT1K LTR MaLR 449 554 -34 380 291 116 40 chr3 81883323 81883522 -145641056 - MIR SINE MIR -4 258 45 258 81 0 0 chr3 81883537 81883574 -145641004 + (CAT)n Simple_repeat Simple_repeat 2 38 0 275 267 311 0 chr3 81883574 81883735 -145640843 - MIR SINE MIR -23 239 29 2012 173 120 31 chr3 81884058 81884516 -145640062 - MLT1D LTR MaLR -6 499 1 230 220 0 0 chr3 81885550 81885600 -145638978 + L1MA1 LINE L1 6253 6302 0 1578 136 67 105 chr3 81885672 81886062 -145638516 + THE1C LTR MaLR 1 375 0 26373 40 1 24 chr3 81886222 81890100 -145634478 + L1PA5 LINE L1 2289 6152 -2 2403 62 0 3 chr3 81890349 81890668 -145633910 - AluY SINE Alu 0 318 1 265 189 87 71 chr3 81891668 81891795 -145632783 + L1ME LINE L1 5754 5882 -239 1714 194 0 7 chr3 81892000 81892304 -145632274 + AluJo SINE Alu 6 307 -5 1123 103 0 38 chr3 81942702 81942887 -145581691 + L1PA13 LINE L1 5985 6162 -1 32 26 0 0 chr3 81942984 81943023 -145581555 + AT_rich Low_complexity Low_complexity 1 39 0 42250 38 21 1 chr3 81943028 81949055 -145575523 - L1PA3 LINE L1 0 6155 4 721 226 60 20 chr3 81949136 81949335 -145575243 + MIR SINE MIR 15 221 -41 228 245 0 0 chr3 81949652 81949705 -145574873 - MER117 DNA MER1_type -108 89 37 337 281 83 33 chr3 81950092 81950213 -145574365 + MIR SINE MIR 64 190 -72 266 286 53 53 chr3 81950250 81950383 -145574195 + L2 LINE L2 3158 3290 -23 180 222 44 0 chr3 81950355 81950400 -145574178 + MIR SINE MIR 216 262 0 * 183 80 0 0 chr3 81950699 81950724 -145573854 + (CA)n Simple_repeat Simple_repeat 1 25 0 180 0 0 0 chr3 81951017 81951037 -145573541 + (A)n Simple_repeat Simple_repeat 1 20 0 1640 148 87 16 chr3 81951166 81951532 -145573046 - Charlie4a DNA MER1_type -41 467 76 21 36 0 0 chr3 81951986 81952014 -145572564 + AT_rich Low_complexity Low_complexity 1 28 0 196 309 21 43 chr3 81952329 81952423 -145572155 - L2 LINE L2 -8 3305 3214 659 304 76 18 chr3 81952561 81952837 -145571741 - MLT1L LTR MaLR -3 612 321 587 224 50 116 chr3 81952937 81953214 -145571364 - MLT1L LTR MaLR -342 273 15 272 319 78 9 chr3 81953219 81953335 -145571243 - MIR SINE MIR -107 155 32 1434 181 67 22 chr3 81953389 81953688 -145570890 + AluJb SINE Alu 3 313 0 336 310 172 53 chr3 81954564 81954977 -145569601 + L2 LINE L2 2423 2884 -430 448 298 15 22 chr3 81956749 81956901 -145567677 + MIR SINE MIR 4 154 -67 316 308 114 3 chr3 81957068 81957393 -145567185 + L1ME4a LINE L1 5717 6077 -44 188 315 141 11 chr3 81958113 81958205 -145566373 - L2 LINE L2 0 3313 3210 188 67 33 0 chr3 81958464 81958494 -145566084 + (TA)n Simple_repeat Simple_repeat 1 31 0 26 30 0 0 chr3 81959114 81959147 -145565431 + AT_rich Low_complexity Low_complexity 1 33 0 1995 160 0 3 chr3 81961635 81961942 -145562636 - AluSx SINE Alu -6 306 1 273 368 37 24 chr3 81962054 81962350 -145562228 + L2 LINE L2 2788 3089 -224 * 527 321 146 20 chr3 81962343 81963088 -145561490 + L2 LINE L2 2278 3119 -194 2087 262 71 38 chr3 81965377 81966166 -145558412 - L1MEc LINE L1 -4801 1595 756 2396 118 36 14 chr3 81966166 81966522 -145558056 + THE1B LTR MaLR 1 364 0 2087 262 71 38 chr3 81966522 81966880 -145557698 - L1MEc LINE L1 -5640 756 411 927 245 75 30 chr3 81966887 81967218 -145557360 - L1MEc LINE L1 -6014 382 37 1830 171 3 0 chr3 81967273 81967560 -145557018 + AluSx SINE Alu 1 288 -24 189 107 0 0 chr3 81967569 81967597 -145556981 + (CAT)n Simple_repeat Simple_repeat 2 29 0 797 256 20 49 chr3 81967951 81968197 -145556381 - MIR SINE MIR 0 262 24 234 191 0 0 chr3 81968253 81968300 -145556278 + GA-rich Low_complexity Low_complexity 4 50 0 321 245 102 34 chr3 81969841 81969988 -145554590 + MER103 DNA DNA 7 163 -3 521 15 15 0 chr3 81970216 81970282 -145554296 + (TAGA)n Simple_repeat Simple_repeat 3 69 0 2437 241 28 18 chr3 81970285 81970888 -145553690 - MLT2F LTR ERVL -54 609 1 1549 220 63 12 chr3 81972851 81973282 -145551296 + L1ME1 LINE L1 5656 6108 -58 323 187 39 103 chr3 81973199 81973354 -145551224 + L1MA10 LINE L1 6180 6324 -10 * 495 247 23 63 chr3 81973381 81973555 -145551023 - MIR SINE MIR -1 261 95 1376 302 72 40 chr3 81974958 81975935 -145548643 + L1MEc LINE L1 38 1012 -5203 246 32 0 0 chr3 81975935 81975966 -145548612 + (CA)n Simple_repeat Simple_repeat 2 32 0 1376 302 72 40 chr3 81975966 81976836 -145547742 + L1MEc LINE L1 1012 1853 -4362 1121 151 9 36 chr3 81976844 81977063 -145547515 - Tigger1 DNA MER2_type -4 2414 2202 733 187 0 53 chr3 81977060 81977210 -145547368 - Tigger1 DNA MER2_type -2276 142 1 * 433 271 50 17 chr3 81977237 81977418 -145547160 + L1MEc LINE L1 1884 2070 -4326 23 33 0 0 chr3 81978084 81978114 -145546464 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 81979683 81979704 -145544874 + AT_rich Low_complexity Low_complexity 1 21 0 1607 181 6 49 chr3 81980921 81981246 -145543332 - AluJo SINE Alu 0 312 2 593 316 36 0 chr3 81983421 81983589 -145540989 - MIR SINE MIR -77 185 12 2146 121 0 0 chr3 81983764 81984053 -145540525 + AluSx SINE Alu 1 289 -23 37 39 0 0 chr3 81984053 81984104 -145540474 + AT_rich Low_complexity Low_complexity 1 51 0 513 234 16 31 chr3 81984792 81984920 -145539658 + MIR3 SINE MIR 5 130 -78 352 381 28 28 chr3 81985078 81985293 -145539285 - MIR SINE MIR -46 216 2 1348 177 51 65 chr3 81986079 81986373 -145538205 + AluJb SINE Alu 7 296 -16 381 176 0 0 chr3 81987129 81987197 -145537381 - Charlie8 DNA MER1_type -2262 155 88 233 87 0 43 chr3 81987201 81987247 -145537331 + (CAA)n Simple_repeat Simple_repeat 2 45 0 212 143 0 0 chr3 81987403 81987438 -145537140 + (TC)n Simple_repeat Simple_repeat 2 36 0 189 147 0 0 chr3 81987438 81987472 -145537106 + (CATATA)n Simple_repeat Simple_repeat 2 35 0 228 200 0 0 chr3 81987499 81987549 -145537029 + (TA)n Simple_repeat Simple_repeat 2 51 0 1954 132 4 4 chr3 81988020 81988327 -145536251 + AluSx SINE Alu 1 307 0 191 342 61 26 chr3 81988381 81988495 -145536083 + MIR3 SINE MIR 40 157 -51 484 251 71 110 chr3 81988497 81988851 -145535727 + MER102b DNA MER1_type 1 340 -1 460 114 13 13 chr3 81988889 81988968 -145535610 + MADE1 DNA Mariner 1 79 -1 23 42 0 21 chr3 81989018 81989037 -145535541 + AT_rich Low_complexity Low_complexity 1 19 -28 2692 82 6 0 chr3 81989037 81989403 -145535175 - L1PA7 LINE L1 0 6154 5787 23 42 0 21 chr3 81989403 81989431 -145535147 + AT_rich Low_complexity Low_complexity 19 47 0 544 335 98 39 chr3 81990097 81990417 -145534161 - L1M4 LINE L1 -3019 3127 2827 2092 187 20 0 chr3 81990417 81990812 -145533766 - MER57A LTR ERV1 0 403 1 544 335 98 39 chr3 81990812 81991083 -145533495 - L1M4 LINE L1 -3319 2827 2501 1492 109 23 31 chr3 81991450 81991587 -145532991 + L1MC1 LINE L1 6070 6206 -127 2029 116 3 16 chr3 81991587 81991897 -145532681 - AluSx SINE Alu -6 306 1 1492 109 23 31 chr3 81991897 81992015 -145532563 + L1MC1 LINE L1 6206 6323 -10 402 202 16 16 chr3 81992027 81992151 -145532427 + GA-rich Low_complexity Low_complexity 6 129 0 239 123 0 53 chr3 81992833 81992890 -145531688 + (CAAGG)n Simple_repeat Simple_repeat 5 58 0 2261 65 0 50 chr3 81993086 81993407 -145531171 + AluY SINE Alu 1 305 -6 253 250 37 28 chr3 81993943 81994051 -145530527 + MER113 DNA MER1_type? 35 143 -378 1644 144 0 81 chr3 81994056 81994376 -145530202 + AluJo SINE Alu 1 294 -18 26 0 0 0 chr3 81994376 81994402 -145530176 + AT_rich Low_complexity Low_complexity 1 26 0 1871 143 55 25 chr3 81994775 81995139 -145529439 + THE1C LTR MaLR 1 375 0 2773 70 20 0 chr3 81995616 81995973 -145528605 + THE1B LTR MaLR 1 364 0 262 240 29 106 chr3 81996095 81996199 -145528379 + L2 LINE L2 3175 3270 -2 2419 276 62 43 chr3 81996790 81998102 -145526476 + L1MEc LINE L1 41 1378 -5018 2178 233 23 10 chr3 81998645 81999161 -145525417 - LTR45 LTR ERV1 0 525 3 269 262 131 0 chr3 81999798 81999882 -145524696 + MIR SINE MIR 40 134 -74 905 283 54 64 chr3 81999891 82000298 -145524280 - LTR33 LTR ERVL 0 521 119 2098 183 50 35 chr3 82000315 82000701 -145523877 + MLT1C LTR MaLR 1 397 -70 2016 126 73 25 chr3 82000701 82001059 -145523519 + THE1C LTR MaLR 1 375 0 2098 183 50 35 chr3 82001059 82001130 -145523448 + MLT1C LTR MaLR 397 465 -2 30 27 0 0 chr3 82001904 82001941 -145522637 + AT_rich Low_complexity Low_complexity 1 37 0 361 299 29 17 chr3 82002032 82002206 -145522372 - L1ME LINE L1 -355 5766 5591 2825 241 55 21 chr3 82002385 82003247 -145521331 - L1ME LINE L1 -872 5274 4384 251 154 0 19 chr3 82003277 82003329 -145521249 + CT-rich Low_complexity Low_complexity 3 53 0 1199 176 40 122 chr3 82005045 82005374 -145519204 + AluJb SINE Alu 1 302 0 275 229 41 17 chr3 82005773 82005886 -145518692 + L1ME LINE L1 5704 5815 -306 411 283 17 34 chr3 82007346 82007575 -145517003 + CT-rich Low_complexity Low_complexity 1 225 0 22 35 0 0 chr3 82009402 82009431 -145515147 + AT_rich Low_complexity Low_complexity 1 29 0 354 320 68 7 chr3 82009469 82009747 -145514831 + L1ME LINE L1 5522 5816 -305 425 242 105 83 chr3 82009756 82009968 -145514610 - L2 LINE L2 -22 3291 3070 807 205 22 70 chr3 82009968 82010197 -145514381 - MER20 DNA MER1_type -1 218 1 425 242 105 83 chr3 82010197 82010261 -145514317 - L2 LINE L2 -243 3070 3009 1121 242 4 16 chr3 82010369 82010613 -145513965 + MIR SINE MIR 1 241 -21 27 0 0 0 chr3 82010618 82010645 -145513933 + AT_rich Low_complexity Low_complexity 1 27 0 273 250 16 16 chr3 82010710 82010834 -145513744 + (TA)n Simple_repeat Simple_repeat 2 125 0 215 353 101 0 chr3 82011156 82011275 -145513303 - L2 LINE L2 -1 3271 3141 517 316 46 23 chr3 82011650 82011824 -145512754 + MIR SINE MIR 35 212 -50 366 293 32 48 chr3 82014567 82014755 -145509823 + HAL1b LINE L1 330 514 -834 739 193 6 60 chr3 82014835 82015001 -145509577 + FRAM SINE Alu 1 157 -9 260 302 198 0 chr3 82015240 82015336 -145509242 - L2 LINE L2 -5 3267 3153 198 344 0 0 chr3 82015681 82015742 -145508836 - L3 LINE CR1 -1 1576 1516 485 300 58 55 chr3 82015796 82016053 -145508525 - MIR SINE MIR 0 262 5 187 364 61 20 chr3 82016041 82016140 -145508438 - L2 LINE L2 -47 3225 3123 * 363 141 84 0 chr3 82016383 82016454 -145508124 + MADE1 DNA Mariner 4 80 0 341 279 0 0 chr3 82017505 82017584 -145506994 - MER5A DNA MER1_type -31 158 80 251 277 63 55 chr3 82017762 82017907 -145506671 - MIR3 SINE MIR -61 147 1 340 313 55 31 chr3 82020716 82020844 -145503734 - L2 LINE L2 -1 3271 3141 2386 93 0 0 chr3 82021005 82021306 -145503272 + AluSx SINE Alu 1 301 -11 425 368 13 13 chr3 82021914 82022148 -145502430 - L2 LINE L2 -1298 2016 1783 304 55 254 0 chr3 82022148 82022203 -145502375 - MADE1 DNA Mariner -11 69 1 807 297 7 37 chr3 82022204 82022473 -145502105 - MIR SINE MIR 0 262 2 270 121 66 55 chr3 82022501 82022592 -145501986 + (TATAA)n Simple_repeat Simple_repeat 2 93 0 218 386 62 44 chr3 82023385 82023657 -145500921 - L2 LINE L2 -1 3271 2995 1068 305 41 32 chr3 82023979 82024422 -145500156 + MLT1J2 LTR MaLR 2 448 -2 300 388 25 12 chr3 82024492 82024734 -145499844 - MIR SINE MIR -1 261 17 180 152 0 0 chr3 82026415 82026448 -145498130 + (TG)n Simple_repeat Simple_repeat 2 34 0 1960 92 8 0 chr3 82026952 82027213 -145497365 - AluSc SINE Alu -14 295 33 1799 157 0 0 chr3 82027455 82027722 -145496856 + AluSx SINE Alu 2 268 -44 1408 266 52 22 chr3 82028036 82028577 -145496001 - L1ME1 LINE L1 -9 6157 5601 339 281 18 44 chr3 82028815 82028914 -145495664 - L2 LINE L2 -4 3309 3212 1955 152 31 0 chr3 82028914 82029203 -145495375 + AluJb SINE Alu 1 298 -14 339 281 18 44 chr3 82029203 82029217 -145495361 - L2 LINE L2 -101 3212 3199 508 211 0 0 chr3 82029480 82029575 -145495003 - MER5B DNA MER1_type -83 95 1 225 191 0 0 chr3 82029998 82030040 -145494538 + L2 LINE L2 3269 3310 -3 347 301 42 36 chr3 82030236 82030402 -145494176 + MIR SINE MIR 24 190 -72 189 312 56 72 chr3 82030449 82030574 -145494004 + L2 LINE L2 3148 3270 -2 22 35 0 0 chr3 82031070 82031099 -145493479 + AT_rich Low_complexity Low_complexity 1 29 0 1720 184 0 3 chr3 82031150 82031443 -145493135 - AluJb SINE Alu -19 293 2 279 0 0 0 chr3 82032527 82032558 -145492020 + (T)n Simple_repeat Simple_repeat 1 31 0 1645 179 13 20 chr3 82032878 82033179 -145491399 + AluJb SINE Alu 1 299 -13 314 322 55 7 chr3 82033247 82033393 -145491185 + MLT1K LTR MaLR 422 574 -14 21 0 0 0 chr3 82033415 82033436 -145491142 + AT_rich Low_complexity Low_complexity 1 21 0 587 157 10 0 chr3 82033979 82034081 -145490497 + FLAM_A SINE Alu 34 136 -6 1739 162 0 65 chr3 82034109 82034430 -145490148 + AluJb SINE Alu 1 300 -12 243 350 40 10 chr3 82034972 82035072 -145489506 + L2 LINE L2 3154 3256 -16 665 139 16 53 chr3 82035297 82035484 -145489094 + GA-rich Low_complexity Low_complexity 1 180 0 1235 47 0 42 chr3 82035484 82035852 -145488726 + (GGGAA)n Simple_repeat Simple_repeat 1 352 0 389 113 75 45 chr3 82035853 82035986 -145488592 + GA-rich Low_complexity Low_complexity 3 139 0 320 256 22 109 chr3 82037474 82037611 -145486967 + MIR SINE MIR 23 147 -115 230 351 45 0 chr3 82037624 82037735 -145486843 + MIR SINE MIR 125 240 -22 678 255 71 5 chr3 82037769 82037953 -145486625 + MER20 DNA MER1_type 1 196 -23 471 192 73 102 chr3 82038510 82038687 -145485891 - MER5B DNA MER1_type -2 176 5 240 348 11 11 chr3 82039141 82039230 -145485348 + L2 LINE L2 3161 3249 -23 1280 172 90 54 chr3 82039254 82039586 -145484992 + MER2 DNA MER2_type 1 344 0 205 283 18 115 chr3 82039828 82039941 -145484637 - MIR3 SINE MIR -22 186 85 330 329 107 37 chr3 82041418 82041634 -145482944 + MIR SINE MIR 15 245 -17 640 332 15 7 chr3 82041817 82042091 -145482487 - Charlie8 DNA MER1_type -2141 276 1 358 327 64 26 chr3 82044299 82044455 -145480123 + MIR3 SINE MIR 19 180 -28 291 226 71 48 chr3 82044552 82044636 -145479942 + L2 LINE L2 3187 3272 0 449 311 46 20 chr3 82046246 82046442 -145478136 - MIR SINE MIR -32 230 30 540 306 43 14 chr3 82046488 82046697 -145477881 - MIR SINE MIR -47 215 1 858 211 106 5 chr3 82048295 82048494 -145476084 - MER20 DNA MER1_type 0 219 1 399 41 0 0 chr3 82050428 82050477 -145474101 + (TA)n Simple_repeat Simple_repeat 1 49 0 419 259 0 0 chr3 82051253 82051369 -145473209 + MER53 DNA DNA 1 116 -73 205 344 0 0 chr3 82051826 82051890 -145472688 + L2 LINE L2 3205 3268 -4 21 57 0 0 chr3 82053123 82053158 -145471420 + AT_rich Low_complexity Low_complexity 1 35 0 213 191 128 0 chr3 82054956 82055003 -145469575 + MIR SINE MIR 177 229 -33 2240 62 10 7 chr3 82055016 82055306 -145469272 - AluY SINE Alu -20 291 1 279 257 27 0 chr3 82055636 82055710 -145468868 + LTR67 LTR ERVL 101 176 -381 52 17 0 0 chr3 82055748 82055807 -145468771 + AT_rich Low_complexity Low_complexity 1 59 0 1080 264 150 14 chr3 82056291 82056783 -145467795 + Charlie7 DNA MER1_type 115 673 -1939 300 193 44 61 chr3 82056786 82056900 -145467678 + Charlie7 DNA MER1_type 2472 2583 -29 567 278 70 37 chr3 82057012 82057199 -145467379 - MIR SINE MIR -14 248 56 2288 105 3 0 chr3 82058025 82058321 -145466257 - AluSp SINE Alu -16 297 1 714 302 145 19 chr3 82058391 82058699 -145465879 + L2 LINE L2 2841 3217 -96 2259 101 3 0 chr3 82058699 82058995 -145465583 - AluSq SINE Alu -16 297 1 714 302 145 19 chr3 82058995 82059106 -145465472 + L2 LINE L2 3217 3313 0 326 294 21 77 chr3 82059134 82059277 -145465301 + MER102a DNA MER1_type 192 326 -4 373 39 0 0 chr3 82060073 82060124 -145464454 - MADE1 DNA Mariner 0 80 30 381 22 0 0 chr3 82061335 82061381 -145463197 + (TG)n Simple_repeat Simple_repeat 1 46 0 1976 189 76 20 chr3 82062905 82063365 -145461213 - L1ME2 LINE L1 -96 6068 5583 244 237 0 0 chr3 82064356 82064415 -145460163 - MER117 DNA MER1_type -20 177 119 375 105 0 0 chr3 82064641 82064698 -145459880 + (TG)n Simple_repeat Simple_repeat 1 57 0 1585 86 131 4 chr3 82065113 82065357 -145459221 + L1PA10 LINE L1 5890 6164 -4 22 70 0 0 chr3 82065719 82065762 -145458816 + AT_rich Low_complexity Low_complexity 1 43 0 1780 133 50 29 chr3 82065827 82066141 -145458437 + AluJb SINE Alu 1 320 0 765 236 22 83 chr3 82066147 82066376 -145458202 + MIR SINE MIR 27 241 -21 441 254 36 0 chr3 82066686 82066796 -145457782 + L2 LINE L2 3195 3308 -5 313 317 49 6 chr3 82066884 82067067 -145457511 - L1ME LINE L1 -299 5822 5632 991 252 18 0 chr3 82067223 82067441 -145457137 + MER58A DNA MER1_type 2 223 -1 1310 270 106 21 chr3 82068534 82069159 -145455419 - L1ME3 LINE L1 -2 6160 5483 479 354 39 13 chr3 82069288 82069517 -145455061 + MIR SINE MIR 15 249 -13 511 348 68 14 chr3 82069774 82069981 -145454597 - MIR SINE MIR -40 222 5 1496 216 118 36 chr3 82070534 82071001 -145453577 - MLT1D LTR MaLR 0 505 1 3780 123 65 11 chr3 82071137 82071757 -145452821 + MER39B LTR ERV1 1 653 0 235 299 58 52 chr3 82071779 82071953 -145452625 + L2 LINE L2 2685 2859 -455 233 396 20 20 chr3 82071957 82072058 -145452520 + MIR SINE MIR 12 112 -150 183 351 20 66 chr3 82072217 82072365 -145452213 + L2 LINE L2 2918 3058 -214 302 360 20 20 chr3 82072365 82072512 -145452066 - MER5A DNA MER1_type 0 189 43 605 179 24 24 chr3 82072591 82072714 -145451864 - LOR1b LTR ERV1 -2 459 337 698 182 23 0 chr3 82072741 82072873 -145451705 + LOR1b LTR ERV1 327 461 0 619 298 240 17 chr3 82072975 82073473 -145451105 + L2 LINE L2 2708 3313 0 240 233 150 0 chr3 82073879 82073939 -145450639 + L2 LINE L2 3241 3309 -4 199 284 53 42 chr3 82074133 82074228 -145450350 + MIR SINE MIR 104 199 -63 201 147 0 0 chr3 82074363 82074397 -145450181 + (A)n Simple_repeat Simple_repeat 1 34 0 186 43 0 0 chr3 82074990 82075013 -145449565 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1973 136 53 11 chr3 82075057 82075492 -145449086 + L1PA13 LINE L1 5711 6163 0 212 313 122 43 chr3 82077734 82077849 -145446729 + L2 LINE L2 3133 3256 -16 396 0 0 0 chr3 82078193 82078237 -145446341 + (TG)n Simple_repeat Simple_repeat 1 44 0 410 135 5 93 chr3 82078372 82078613 -145445965 + (TAA)n Simple_repeat Simple_repeat 1 219 0 30 0 0 0 chr3 82079261 82079291 -145445287 + AT_rich Low_complexity Low_complexity 1 30 0 30 59 0 0 chr3 82079422 82079473 -145445105 + AT_rich Low_complexity Low_complexity 1 51 0 180 286 22 66 chr3 82079518 82079609 -145444969 + MIR SINE MIR 46 132 -130 2670 191 48 17 chr3 82079764 82079782 -145444796 + MER68 LTR ERV1 1 17 -545 9612 59 17 2 chr3 82079782 82081782 -145442796 + L1PA5 LINE L1 4141 6153 -1 2670 191 48 17 chr3 82081782 82082301 -145442277 + MER68 LTR ERV1 17 555 -7 332 269 29 29 chr3 82082307 82082411 -145442167 + MIR SINE MIR 85 188 -74 590 272 119 57 chr3 82082830 82083165 -145441413 + MLT1L LTR MaLR 127 482 -133 10506 189 47 50 chr3 82084448 82085081 -145439497 - L1MC3 LINE L1 -1 7784 7151 280 246 0 14 chr3 82085081 82085150 -145439428 - MLT1F1 LTR MaLR -458 109 42 10506 189 47 50 chr3 82085150 82085442 -145439136 - L1MC3 LINE L1 -634 7151 6860 4041 155 91 7 chr3 82085442 82086204 -145438374 + LTR1B LTR ERV1 1 826 0 10506 189 47 50 chr3 82086204 82087892 -145436686 - L1MC3 LINE L1 -925 6860 4914 23 0 0 0 chr3 82088088 82088111 -145436467 + AT_rich Low_complexity Low_complexity 1 23 0 757 280 43 90 chr3 82088955 82089136 -145435442 - L2 LINE L2 0 3313 3125 1978 159 0 0 chr3 82089136 82089438 -145435140 + AluSx SINE Alu 1 302 -10 757 280 43 90 chr3 82089438 82089681 -145434897 - L2 LINE L2 -188 3125 2929 1281 227 57 20 chr3 82089681 82090033 -145434545 - MLT1A1 LTR MaLR 0 365 1 757 280 43 90 chr3 82090033 82090245 -145434333 - L2 LINE L2 -384 2929 2709 2157 108 7 0 chr3 82090468 82090764 -145433814 + AluSq SINE Alu 1 298 -15 620 354 30 32 chr3 82092033 82092372 -145432206 - L2 LINE L2 -91 3222 2885 1865 230 39 28 chr3 82092823 82093283 -145431295 + L1MD1 LINE L1 21 485 -6055 2673 201 50 45 chr3 82093290 82094082 -145430496 + L1MD1 LINE L1 1416 2211 -4329 4722 197 71 31 chr3 82094101 82095660 -145428918 + L1MD1 LINE L1 5011 6636 0 843 251 119 42 chr3 82095918 82096348 -145428230 + LTR16B LTR ERVL 2 464 0 902 289 120 43 chr3 82096429 82097202 -145427376 + HAL1 LINE L1 583 1415 -1092 357 272 82 7 chr3 82097577 82097724 -145426854 - L1ME4a LINE L1 -3 6118 5961 22 56 0 0 chr3 82097825 82097861 -145426717 + AT_rich Low_complexity Low_complexity 1 36 0 189 308 22 22 chr3 82098272 82098363 -145426215 - MIR SINE MIR -96 166 76 1061 245 54 68 chr3 82098467 82098891 -145425687 - MER113 DNA MER1_type? -17 504 87 1208 133 0 15 chr3 82098903 82099098 -145425480 + L1PA8A LINE L1 5940 6131 0 1827 243 24 5 chr3 82099385 82099805 -145424773 - MER63B DNA MER1_type -2 434 7 405 325 100 15 chr3 82102316 82102516 -145422062 - MIR SINE MIR -28 234 18 216 194 0 0 chr3 82104024 82104060 -145420518 + (TATG)n Simple_repeat Simple_repeat 2 37 0 225 303 25 57 chr3 82104254 82104376 -145420202 + MER5A DNA MER1_type 50 167 -22 2081 156 46 19 chr3 82104529 82104945 -145419633 + L1 LINE L1 3970 4396 -1750 237 33 0 0 chr3 82105166 82105196 -145419382 + (TG)n Simple_repeat Simple_repeat 1 30 0 771 279 69 82 chr3 82105390 82106000 -145418578 - HAL1b LINE L1 -486 862 261 982 244 9 4 chr3 82106285 82106514 -145418064 - L1MC3 LINE L1 -1525 6260 6031 * 5246 203 58 66 chr3 82106513 82107339 -145417239 - L1MC3 LINE L1 -931 6854 6044 2890 9 0 0 chr3 82107339 82107657 -145416921 - AluYb8 SINE Alu 0 318 1 5246 203 58 66 chr3 82107657 82108389 -145416189 - L1MC3 LINE L1 -1741 6044 5308 1781 174 20 14 chr3 82108401 82108752 -145415826 - L1MA4 LINE L1 -10 6290 5938 24 0 0 0 chr3 82108752 82108776 -145415802 + AT_rich Low_complexity Low_complexity 1 24 0 2985 133 2 2 chr3 82108798 82109271 -145415307 - L1MA4 LINE L1 -350 5950 5478 936 208 60 28 chr3 82109274 82109591 -145414987 - L1M4 LINE L1 -778 5368 5042 286 275 160 30 chr3 82109606 82109875 -145414703 + L1ME4a LINE L1 5789 6092 -29 2740 220 51 39 chr3 82109881 82110705 -145413873 - L1M4 LINE L1 -1132 5014 4181 766 239 37 33 chr3 82110799 82111042 -145413536 - L1M4 LINE L1 -1897 4249 4006 7529 146 12 19 chr3 82111050 82113485 -145411093 - L1MA4A LINE L1 -11 6292 3868 547 179 29 16 chr3 82113501 82113643 -145410935 - L1M4 LINE L1 -2152 3994 3846 200 132 26 0 chr3 82113643 82113681 -145410897 + T-rich Low_complexity Low_complexity 5 43 0 1867 136 43 0 chr3 82113684 82113963 -145410615 - AluSx SINE Alu -17 295 5 473 295 6 0 chr3 82113970 82114136 -145410442 - L1M4 LINE L1 -846 5300 5134 * 5836 236 91 22 chr3 82114134 82115279 -145409299 - L1MDa LINE L1 -4129 2411 1346 2022 121 3 0 chr3 82115279 82115581 -145408997 - AluSp SINE Alu 0 303 1 5836 236 91 22 chr3 82115581 82116525 -145408053 - L1MDa LINE L1 -5194 1346 2 311 305 55 8 chr3 82118075 82118203 -145406375 - L1ME4a LINE L1 -32 6089 5956 672 320 76 41 chr3 82118749 82119742 -145404836 + L1MC4a LINE L1 4881 5395 -751 535 283 31 6 chr3 82120034 82120193 -145404385 + L1MC4a LINE L1 5579 5741 -2067 370 132 62 132 chr3 82120304 82120346 -145404232 - MER53 DNA DNA -68 121 78 1893 97 0 0 chr3 82120346 82120640 -145403938 - AluSg SINE Alu 0 328 35 370 132 62 132 chr3 82120640 82120725 -145403853 - MER53 DNA DNA -111 78 2 1149 249 107 37 chr3 82120731 82121133 -145403445 - LTR16A LTR ERVL -20 430 1 396 341 44 0 chr3 82121682 82121887 -145402691 + L1MC4a LINE L1 6500 6713 -1095 4395 41 0 4 chr3 82121904 82122446 -145402132 - L1PA5 LINE L1 0 6154 5615 466 253 102 34 chr3 82122541 82122956 -145401622 + L1MC4a LINE L1 6997 7352 -456 693 283 43 48 chr3 82122986 82123446 -145401132 + L1MC5 LINE L1 7310 7767 -194 595 175 58 0 chr3 82123751 82123854 -145400724 + MER20 DNA MER1_type 1 109 -110 25 0 0 0 chr3 82124566 82124591 -145399987 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr3 82124697 82124722 -145399856 + AT_rich Low_complexity Low_complexity 1 25 0 957 174 68 0 chr3 82126186 82126376 -145398202 + MER3 DNA MER1_type 2 204 -5 190 229 43 43 chr3 82126538 82126608 -145397970 + MIR SINE MIR 118 187 -75 182 259 62 49 chr3 82126835 82126916 -145397662 - L2 LINE L2 0 3272 3191 837 280 23 0 chr3 82129542 82129760 -145394818 + MER58A DNA MER1_type 1 223 -1 2060 146 34 65 chr3 82130183 82130627 -145393951 + MSTB1 LTR MaLR 3 432 0 433 244 67 37 chr3 82130891 82131057 -145393521 + MLT1H1 LTR MaLR 11 224 -325 1130 284 36 25 chr3 82131057 82131413 -145393165 - L2 LINE L2 -1292 2022 1663 216 293 98 0 chr3 82131510 82131592 -145392986 + MIR SINE MIR 88 177 -85 2124 140 70 39 chr3 82131714 82132129 -145392449 - MSTA LTR MaLR 0 428 1 524 277 102 21 chr3 82133555 82133790 -145390788 - MIR SINE MIR 0 262 9 378 343 89 19 chr3 82133961 82134174 -145390404 + MIR SINE MIR 2 229 -33 281 268 153 30 chr3 82134618 82134771 -145389807 + MIR SINE MIR 76 259 -3 538 313 211 27 chr3 82134809 82135513 -145389065 - L2 LINE L2 -4 3309 2465 998 212 10 0 chr3 82135865 82136068 -145388510 + L1MB3 LINE L1 5971 6175 -8 554 194 22 0 chr3 82136259 82136393 -145388185 + MER96B DNA MER1_type? 245 381 -36 211 213 43 0 chr3 82136664 82136711 -145387867 + CT-rich Low_complexity Low_complexity 2 50 0 318 306 57 38 chr3 82137222 82137379 -145387199 + MIR SINE MIR 12 171 -91 274 182 104 26 chr3 82137451 82137528 -145387050 + MIR SINE MIR 180 262 0 285 316 0 41 chr3 82137823 82137921 -145386657 - L2 LINE L2 -1 3312 3219 * 381 361 27 16 chr3 82137897 82138080 -145386498 - L2 LINE L2 -927 2387 2203 947 219 10 5 chr3 82138666 82138862 -145385716 - AluJb SINE Alu -11 301 105 219 211 0 0 chr3 82138971 82139009 -145385569 + (TG)n Simple_repeat Simple_repeat 1 38 0 423 274 92 12 chr3 82139030 82139194 -145385384 - L1ME LINE L1 -461 5660 5484 262 333 0 0 chr3 82140620 82140689 -145383889 + MIR SINE MIR 77 145 -117 1878 116 66 30 chr3 82140946 82141247 -145383331 + AluSx SINE Alu 1 312 0 1931 167 76 17 chr3 82141578 82141986 -145382592 + MSTB1 LTR MaLR 1 432 0 2115 138 3 3 chr3 82142012 82142323 -145382255 + AluSx SINE Alu 1 311 -1 214 316 21 11 chr3 82143717 82143812 -145380766 - MIR SINE MIR -19 243 148 23 54 0 0 chr3 82143860 82143897 -145380681 + AT_rich Low_complexity Low_complexity 1 37 0 2037 153 0 0 chr3 82143942 82144230 -145380348 + AluSx SINE Alu 1 288 -24 229 165 10 41 chr3 82144237 82144334 -145380244 + (TA)n Simple_repeat Simple_repeat 2 95 0 760 278 33 0 chr3 82144869 82145081 -145379497 + MER58A DNA MER1_type 5 223 -1 1766 258 106 68 chr3 82145949 82147330 -145377248 + L1MEc LINE L1 38 1594 -4802 1193 155 26 0 chr3 82147330 82147556 -145377022 + L1MA8 LINE L1 6058 6289 -2 1766 258 106 68 chr3 82147556 82148213 -145376365 + L1MEc LINE L1 1594 2225 -4171 2287 118 14 3 chr3 82148251 82148599 -145375979 - THE1A LTR MaLR 0 355 4 11393 95 6 8 chr3 82148602 82150186 -145374392 - THE1A-int LTR MaLR 0 1580 1 2201 139 11 3 chr3 82150186 82150538 -145374040 - THE1A LTR MaLR 0 355 1 344 343 36 0 chr3 82150881 82151018 -145373560 + MIR3 SINE MIR 36 177 -31 951 126 58 37 chr3 82151193 82151384 -145373194 - L1PA16 LINE L1 -9 6157 5963 342 296 0 9 chr3 82151891 82151999 -145372579 + MER103 DNA DNA 2 108 -58 197 300 50 80 chr3 82152297 82152397 -145372181 + L2 LINE L2 3138 3234 -38 2434 124 6 3 chr3 82152895 82153258 -145371320 + THE1B LTR MaLR 1 364 0 22 0 0 0 chr3 82153715 82153737 -145370841 + AT_rich Low_complexity Low_complexity 1 22 0 203 56 56 0 chr3 82154338 82154374 -145370204 + T-rich Low_complexity Low_complexity 4 41 0 193 282 204 19 chr3 82155853 82155956 -145368622 + MIR SINE MIR 67 188 -74 286 224 35 0 chr3 82156029 82156087 -145368491 + MIR SINE MIR 85 144 -64 343 301 44 22 chr3 82158310 82158446 -145366132 - MER117 DNA MER1_type 0 197 59 581 256 88 52 chr3 82158834 82159084 -145365494 - MLT1K LTR MaLR -8 580 322 483 18 0 0 chr3 82160279 82160335 -145364243 + (TTTCC)n Simple_repeat Simple_repeat 4 59 0 243 88 0 0 chr3 82160342 82160376 -145364202 + (TC)n Simple_repeat Simple_repeat 1 34 0 1675 176 6 28 chr3 82160376 82160695 -145363883 - AluJb SINE Alu 0 312 1 2353 85 0 0 chr3 82161006 82161299 -145363279 - AluY SINE Alu -17 294 2 21 0 0 0 chr3 82163752 82163773 -145360805 + AT_rich Low_complexity Low_complexity 1 21 0 34 55 0 0 chr3 82164291 82164346 -145360232 + AT_rich Low_complexity Low_complexity 1 55 0 315 208 78 58 chr3 82164531 82164685 -145359893 + L1ME4a LINE L1 5963 6119 -2 443 268 115 35 chr3 82165336 82165649 -145358929 + LTR37A LTR ERV1 83 420 -6 1152 131 60 6 chr3 82166104 82166287 -145358291 - MER20 DNA MER1_type -21 198 6 382 213 28 14 chr3 82166298 82166439 -145358139 + GA-rich Low_complexity Low_complexity 5 147 0 348 339 47 52 chr3 82166451 82166643 -145357935 + MIR3 SINE MIR 3 193 -15 2136 66 22 7 chr3 82166748 82167065 -145357513 - AluY SINE Alu 0 325 5 239 154 0 19 chr3 82167909 82167961 -145356617 + CT-rich Low_complexity Low_complexity 1 51 0 2598 37 3 0 chr3 82168820 82169119 -145355459 + AluY SINE Alu 1 300 -11 1883 267 41 12 chr3 82169247 82169909 -145354669 + L1M4 LINE L1 4282 4962 -1184 257 340 130 0 chr3 82170206 82170306 -145354272 - L2 LINE L2 0 3272 3160 10000 84 3 6 chr3 82170341 82171737 -145352841 - L1P LINE L1 -1010 5136 3745 206 290 72 14 chr3 82171842 82171911 -145352667 - L2 LINE L2 -250 3063 2991 22 0 0 0 chr3 82172840 82172862 -145351716 + AT_rich Low_complexity Low_complexity 1 22 0 2305 229 152 10 chr3 82172971 82173832 -145350746 - L1ME2 LINE L1 -9 6155 5186 6108 205 34 13 chr3 82173842 82176034 -145348544 - L1MC2 LINE L1 -9 6335 4088 2720 85 92 5 chr3 82176034 82176446 -145348132 - LTR7 LTR ERV1 -2 448 1 6108 205 34 13 chr3 82176446 82176459 -145348119 - L1MC2 LINE L1 -2256 4088 4077 2064 112 52 16 chr3 82176459 82176825 -145347753 - HERVH LTR ERV1 -13 7700 7322 1439 120 19 0 chr3 82176823 82177039 -145347539 - HERVH LTR ERV1 -1894 5819 5600 * 4293 152 0 1 chr3 82177040 82177703 -145346875 - HERVH LTR ERV1 -2564 5149 4488 6224 85 1 2 chr3 82177705 82178560 -145346018 - HERVH LTR ERV1 -3720 3993 3140 * 14099 97 25 19 chr3 82178554 82180815 -145343763 - HERVH LTR ERV1 -4726 2987 714 3541 99 19 24 chr3 82180790 82181365 -145343213 - HERVH LTR ERV1 -7141 572 1 * 2583 78 93 12 chr3 82181372 82181782 -145342796 - LTR7 LTR ERV1 -7 443 1 644 211 27 7 chr3 82181782 82181929 -145342649 - L1MC2 LINE L1 -2046 4100 3951 439 46 0 259 chr3 82182009 82182117 -145342461 + MADE1 DNA Mariner 1 80 0 344 222 35 90 chr3 82182198 82182342 -145342236 - L1M4 LINE L1 -918 5228 5093 20465 152 27 12 chr3 82182447 82186335 -145338243 + L1MA3 LINE L1 18 3961 -3604 410 0 20 0 chr3 82186335 82186385 -145338193 + (TTTA)n Simple_repeat Simple_repeat 3 53 0 34870 39 23 2 chr3 82186386 82191747 -145332831 - L1PA3 LINE L1 -14 6141 663 2627 215 25 19 chr3 82191749 82192471 -145332107 + L1MA3 LINE L1 3951 4676 -2889 1532 223 34 8 chr3 82192504 82192953 -145331625 - L1ME LINE L1 -488 5678 5219 24342 53 2 0 chr3 82192968 82196864 -145327714 - L1PA5 LINE L1 0 6154 2255 9099 161 13 34 chr3 82196881 82197798 -145326780 + L1MA3 LINE L1 4715 5650 -2074 1955 147 42 36 chr3 82197798 82198158 -145326420 - THE1B LTR MaLR 0 364 3 9099 161 13 34 chr3 82198158 82200314 -145324264 + L1MA3 LINE L1 5650 7724 0 207 313 75 12 chr3 82201272 82201352 -145323226 + MIR3 SINE MIR 106 190 -18 1006 296 80 59 chr3 82201423 82201800 -145322778 + L2 LINE L2 2561 2929 -384 2363 112 8 11 chr3 82201800 82202156 -145322422 + THE1A LTR MaLR 1 355 0 11273 94 11 20 chr3 82202156 82203751 -145320827 + THE1A-int LTR MaLR 1 1580 0 2150 132 20 3 chr3 82203752 82204101 -145320477 + THE1A LTR MaLR 1 355 0 1006 296 80 59 chr3 82204101 82204451 -145320127 + L2 LINE L2 2928 3313 0 28 29 0 0 chr3 82205038 82205073 -145319505 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr3 82205436 82205457 -145319121 + AT_rich Low_complexity Low_complexity 1 21 0 201 308 46 15 chr3 82207392 82207457 -145317121 - MIR SINE MIR -112 150 84 431 313 133 13 chr3 82207952 82208185 -145316393 - MIR SINE MIR 0 262 2 435 304 74 76 chr3 82208791 82209265 -145315313 + L2 LINE L2 2841 3313 0 259 212 0 19 chr3 82209328 82209413 -145315165 - L1ME3 LINE L1 -1 6177 6093 232 267 12 12 chr3 82209940 82210026 -145314552 + CT-rich Low_complexity Low_complexity 2 87 0 21 36 0 0 chr3 82210441 82210469 -145314109 + AT_rich Low_complexity Low_complexity 1 28 0 32 43 0 0 chr3 82210556 82210602 -145313976 + AT_rich Low_complexity Low_complexity 1 46 0 1521 196 0 11 chr3 82210655 82210935 -145313643 + AluJo SINE Alu 1 277 -35 29 60 0 0 chr3 82210950 82211000 -145313578 + AT_rich Low_complexity Low_complexity 1 50 0 442 297 83 42 chr3 82211025 82211338 -145313240 - HAL1 LINE L1 -6 2501 2176 198 357 29 0 chr3 82212488 82212558 -145312020 + L2 LINE L2 3193 3264 -8 258 340 0 10 chr3 82212603 82212706 -145311872 + CT-rich Low_complexity Low_complexity 3 104 0 21 36 0 0 chr3 82212893 82212921 -145311657 + AT_rich Low_complexity Low_complexity 1 28 0 348 219 0 0 chr3 82213432 82213496 -145311082 + Charlie3 DNA MER1_type 40 103 -2607 180 0 0 0 chr3 82264433 82264453 -145260125 + (TTA)n Simple_repeat Simple_repeat 2 21 0 184 206 0 0 chr3 82265287 82265321 -145259257 - L2 LINE L2 -1 3312 3279 505 284 43 0 chr3 82265628 82265790 -145258788 - MER46C DNA MER2_type -4 334 166 252 362 45 6 chr3 82265958 82266135 -145258443 - L2 LINE L2 -748 2566 2383 306 0 0 0 chr3 82267486 82267520 -145257058 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 237 139 0 0 chr3 82267893 82267936 -145256642 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 240 232 18 0 chr3 82267936 82267992 -145256586 + (TTCA)n Simple_repeat Simple_repeat 3 59 0 467 321 40 18 chr3 82268258 82268482 -145256096 - L1MEc LINE L1 -4797 1513 1285 290 277 71 38 chr3 82268493 82268677 -145255901 - L1MEc LINE L1 -4885 1234 1045 264 30 0 0 chr3 82268868 82268901 -145255677 + (TG)n Simple_repeat Simple_repeat 2 34 0 2187 118 60 20 chr3 82268926 82269274 -145255304 - THE1B LTR MaLR 0 364 3 9340 101 20 3 chr3 82269276 82270657 -145253921 - THE1B-int LTR MaLR 0 1580 177 296 370 72 16 chr3 82272235 82272484 -145252094 + L3b LINE CR1 1317 1579 -4 21 0 0 0 chr3 82272788 82272809 -145251769 + AT_rich Low_complexity Low_complexity 1 21 0 722 275 63 0 chr3 82272881 82273088 -145251490 - MER58A DNA MER1_type -4 220 1 239 287 81 0 chr3 82273095 82273182 -145251396 - MIR SINE MIR -99 163 70 23 33 0 0 chr3 82273325 82273355 -145251223 + AT_rich Low_complexity Low_complexity 1 30 0 4023 155 5 44 chr3 82273395 82274195 -145250383 - L1PB4 LINE L1 0 6858 6090 * 5397 222 35 8 chr3 82274194 82275700 -145248878 - L1PB4 LINE L1 -1975 4873 3328 2133 213 78 17 chr3 82275705 82276529 -145248049 - L1PB4 LINE L1 -4594 2254 1335 355 267 0 30 chr3 82276509 82276610 -145247968 - L1PB4 LINE L1 -5280 1568 1471 * 348 343 37 23 chr3 82276947 82277247 -145247331 - L1PB4 LINE L1 -5844 1005 702 430 385 76 42 chr3 82277360 82277939 -145246639 - L1PB4 LINE L1 -6233 616 18 633 185 104 0 chr3 82277939 82278074 -145246504 - MER21B LTR ERV1 -367 496 348 300 158 132 0 chr3 82278525 82278601 -145245977 + L1MA4 LINE L1 6201 6286 -14 556 330 37 18 chr3 82279681 82280008 -145244570 + LTR16C LTR ERVL 159 491 0 345 347 68 17 chr3 82280388 82280564 -145244014 - MIR3 SINE MIR -10 198 14 2236 95 3 0 chr3 82281697 82282004 -145242574 - AluSp SINE Alu 0 308 1 793 166 105 50 chr3 82282063 82282104 -145242474 - MER20 DNA MER1_type 0 219 182 2045 119 47 36 chr3 82282104 82282464 -145242114 - THE1B LTR MaLR 0 364 1 793 166 105 50 chr3 82282464 82282603 -145241975 - MER20 DNA MER1_type -37 182 29 212 143 24 0 chr3 82282720 82282762 -145241816 + (TA)n Simple_repeat Simple_repeat 1 43 0 24 0 0 0 chr3 82282767 82282791 -145241787 + AT_rich Low_complexity Low_complexity 1 24 0 2211 167 9 2 chr3 82282791 82283170 -145241408 - MLT2D LTR ERVL -40 480 1 1134 276 57 30 chr3 82283170 82283537 -145241041 - LTR16C LTR ERVL -114 377 1 490 363 39 6 chr3 82284330 82284569 -145240009 - MIR SINE MIR -5 257 12 5303 136 20 11 chr3 82284880 82286141 -145238437 + L1PA16 LINE L1 4213 5495 -671 207 0 0 0 chr3 82286141 82286164 -145238414 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 5303 136 20 11 chr3 82286164 82286843 -145237735 + L1PA16 LINE L1 5495 6166 0 331 284 64 0 chr3 82286998 82287107 -145237471 + MIR SINE MIR 146 261 -1 222 377 77 46 chr3 82287574 82287834 -145236744 - L2 LINE L2 -9 3263 2996 22 0 0 0 chr3 82289245 82289267 -145235311 + AT_rich Low_complexity Low_complexity 1 22 0 228 338 95 14 chr3 82290749 82290897 -145233681 - MIR SINE MIR -44 218 59 391 311 30 15 chr3 82291082 82291217 -145233361 - MIR SINE MIR -109 153 17 21 36 0 0 chr3 82291447 82291475 -145233103 + AT_rich Low_complexity Low_complexity 1 28 0 200 376 26 34 chr3 82293460 82293577 -145231001 - L3 LINE CR1 -232 1345 1230 264 341 97 35 chr3 82293937 82294163 -145230415 + L3 LINE CR1 1019 1258 -319 388 241 0 11 chr3 82294203 82294290 -145230288 - MIR SINE MIR -101 161 76 22 0 0 0 chr3 82294616 82294638 -145229940 + AT_rich Low_complexity Low_complexity 1 22 0 222 118 0 0 chr3 82294969 82295003 -145229575 + (A)n Simple_repeat Simple_repeat 1 34 0 209 329 130 48 chr3 82296429 82296760 -145227818 + L2 LINE L2 2955 3312 -1 201 259 12 62 chr3 82296769 82296850 -145227728 - L2 LINE L2 -650 2664 2588 399 269 111 28 chr3 82297038 82297362 -145227216 - L1ME4a LINE L1 -2 6119 5697 207 69 0 0 chr3 82298048 82298077 -145226501 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1970 104 36 10 chr3 82300531 82300839 -145223739 + L1MA8 LINE L1 5972 6287 -4 22 35 0 0 chr3 82300839 82300868 -145223710 + AT_rich Low_complexity Low_complexity 1 29 0 1025 224 75 22 chr3 82301225 82301493 -145223085 + Charlie8 DNA MER1_type 1 282 -2135 413 291 66 20 chr3 82301587 82301738 -145222840 - MIR SINE MIR -66 196 39 25 0 0 0 chr3 82302355 82302380 -145222198 + AT_rich Low_complexity Low_complexity 1 25 0 192 158 0 0 chr3 82302601 82302639 -145221939 + GA-rich Low_complexity Low_complexity 1 38 0 443 279 102 60 chr3 82304178 82304443 -145220135 - Charlie8 DNA MER1_type -2141 276 1 388 208 40 10 chr3 82305053 82305154 -145219424 + MER103 DNA DNA 62 165 -1 27 29 0 0 chr3 82305513 82305547 -145219031 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr3 82305684 82305706 -145218872 + AT_rich Low_complexity Low_complexity 1 22 0 184 154 31 108 chr3 82308413 82308478 -145216100 + L2 LINE L2 2671 2730 -584 1311 234 88 49 chr3 82308478 82308889 -145215689 - MLT2B1 LTR ERVL 0 520 94 304 308 145 51 chr3 82309290 82309566 -145215012 + L2 LINE L2 3009 3310 -3 269 304 101 14 chr3 82310734 82310801 -145213777 + MLT1K LTR MaLR 86 146 -442 2465 138 7 51 chr3 82310801 82311250 -145213328 - MSTB1 LTR MaLR 0 432 4 269 304 101 14 chr3 82311250 82311330 -145213248 + MLT1K LTR MaLR 146 246 -342 374 283 99 47 chr3 82311340 82311573 -145213005 + MLT1K LTR MaLR 336 580 -8 197 297 110 25 chr3 82312001 82312119 -145212459 - MIR SINE MIR -62 146 19 191 338 28 0 chr3 82312229 82312300 -145212278 + L2 LINE L2 3236 3308 -5 501 219 116 32 chr3 82312504 82312659 -145211919 + MIR SINE MIR 80 247 -15 26 0 0 0 chr3 82312935 82312961 -145211617 + AT_rich Low_complexity Low_complexity 1 26 0 31 44 0 0 chr3 82312992 82313037 -145211541 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr3 82313988 82314018 -145210560 + AT_rich Low_complexity Low_complexity 1 30 0 186 143 0 0 chr3 82315201 82315236 -145209342 + (TG)n Simple_repeat Simple_repeat 1 35 0 362 243 95 30 chr3 82316162 82316331 -145208247 - MIR SINE MIR -19 243 64 500 245 77 21 chr3 82316991 82317134 -145207444 - MIR SINE MIR -91 171 21 2182 108 0 10 chr3 82317614 82317911 -145206667 - AluSx SINE Alu -16 296 3 227 114 0 0 chr3 82318288 82318323 -145206255 - MER117 DNA MER1_type -40 157 123 313 174 0 23 chr3 82318866 82318952 -145205626 + CT-rich Low_complexity Low_complexity 4 87 0 201 375 115 10 chr3 82320018 82320122 -145204456 - L2 LINE L2 -8 3264 3150 918 171 55 6 chr3 82320780 82320944 -145203634 + LTR28 LTR ERV1 3 174 -846 14347 132 26 6 chr3 82320947 82323479 -145201099 - LTR28-int LTR ERV1 -2100 4991 2854 6221 201 52 51 chr3 82323581 82325326 -145199252 - LTR28-int LTR ERV1 -1432 1656 1 4610 187 78 27 chr3 82325326 82326296 -145198282 - LTR28 LTR ERV1 0 1020 1 517 228 0 18 chr3 82326308 82326422 -145198156 - MIR SINE MIR -106 156 45 358 336 0 9 chr3 82326457 82326564 -145198014 - MER5B DNA MER1_type -3 175 70 1880 72 8 8 chr3 82327045 82327294 -145197284 + AluY SINE Alu 55 303 -8 677 117 54 0 chr3 82328002 82328113 -145196465 + MER3 DNA MER1_type 93 209 0 242 143 24 0 chr3 82328611 82328653 -145195925 - L1ME3A LINE L1 -10 6160 6118 1365 93 44 40 chr3 82329892 82330118 -145194460 - THE1B LTR MaLR -137 227 1 2816 73 0 0 chr3 82330123 82330477 -145194101 - THE1B-int LTR MaLR -35 1545 1192 273 227 0 0 chr3 82330507 82330573 -145194005 - L1ME3A LINE L1 -37 6133 6068 * 899 235 33 5 chr3 82330570 82330783 -145193795 - L1ME3A LINE L1 -448 5722 5504 482 325 12 31 chr3 82330981 82331141 -145193437 - L1MEd LINE L1 -5394 725 569 314 351 41 62 chr3 82331156 82331623 -145192955 - L1MEd LINE L1 -5624 495 39 887 250 27 0 chr3 82331631 82331851 -145192727 + Charlie1 DNA MER1_type 8 233 -2528 621 252 7 0 chr3 82331850 82331985 -145192593 + Charlie1 DNA MER1_type 2626 2761 0 * 187 336 43 43 chr3 82332133 82332249 -145192329 + MIR SINE MIR 19 134 -128 181 271 42 21 chr3 82332609 82332657 -145191921 + MIR SINE MIR 42 90 -118 672 232 72 26 chr3 82332917 82333111 -145191467 + MLT1H1 LTR MaLR 346 548 -7 808 155 45 26 chr3 82333137 82333292 -145191286 - FRAM SINE Alu -7 169 12 933 174 7 0 chr3 82333444 82333599 -145190979 + AluSg/x SINE Alu 129 284 -28 221 56 0 28 chr3 82333599 82333635 -145190943 + (TTAA)n Simple_repeat Simple_repeat 2 36 0 3108 138 13 8 chr3 82333635 82334162 -145190416 - L1MB3 LINE L1 -58 6125 5597 21 0 0 0 chr3 82337959 82337980 -145186598 + AT_rich Low_complexity Low_complexity 1 21 0 524 315 37 46 chr3 82339746 82339987 -145184591 + MIR SINE MIR 2 240 -22 32 43 0 0 chr3 82340671 82340717 -145183861 + AT_rich Low_complexity Low_complexity 1 46 0 219 203 14 14 chr3 82340750 82340819 -145183759 + (TTATA)n Simple_repeat Simple_repeat 5 73 0 297 214 270 16 chr3 82340832 82340958 -145183620 + L1MC4a LINE L1 6598 6755 -1053 1575 181 41 10 chr3 82341004 82341296 -145183282 - AluJb SINE Alu -10 302 2 32 26 0 0 chr3 82341480 82341519 -145183059 + AT_rich Low_complexity Low_complexity 1 39 0 24 77 0 0 chr3 82341573 82341625 -145182953 + AT_rich Low_complexity Low_complexity 1 52 0 1023 232 47 59 chr3 82341903 82342243 -145182335 - MER46C DNA MER2_type -1 337 2 1753 223 56 22 chr3 82342279 82342385 -145182193 + L1MC4a LINE L1 7343 7444 -364 2364 195 61 2 chr3 82342385 82342862 -145181716 + MLT1D LTR MaLR 1 505 0 1753 223 56 22 chr3 82342862 82343203 -145181375 + L1MC4a LINE L1 7444 7805 -3 564 230 84 37 chr3 82343325 82343516 -145181062 - MIR SINE MIR 0 262 63 207 0 0 0 chr3 82343840 82343863 -145180715 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr3 82344442 82344464 -145180114 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr3 82345028 82345052 -145179526 + AT_rich Low_complexity Low_complexity 1 24 0 183 302 0 19 chr3 82346831 82346884 -145177694 - L2 LINE L2 -5 3267 3216 222 37 0 0 chr3 82346889 82346916 -145177662 + (A)n Simple_repeat Simple_repeat 1 27 0 475 346 49 28 chr3 82347002 82347392 -145177186 + L1MC4a LINE L1 4936 5333 -813 1117 253 130 28 chr3 82347403 82347921 -145176657 + L1MC4a LINE L1 5371 5477 -689 924 114 4 3 chr3 82348482 82348710 -145175868 + AluSx SINE Alu 1 299 -13 407 341 10 13 chr3 82348801 82348947 -145175631 + MIR SINE MIR 7 149 -59 347 325 38 27 chr3 82349599 82350095 -145174483 - L1MCc LINE L1 -4955 1468 1208 191 240 144 96 chr3 82351998 82352123 -145172455 - MER5A DNA MER1_type 0 189 59 383 231 142 30 chr3 82352767 82352901 -145171677 + MIR SINE MIR 18 166 -96 2337 265 52 24 chr3 82352919 82353685 -145170893 - L1ME3A LINE L1 -8 6162 5375 297 236 34 22 chr3 82353690 82353779 -145170799 + MIR SINE MIR 173 262 0 918 246 19 0 chr3 82355086 82355301 -145169277 + MER20 DNA MER1_type 1 219 0 311 191 29 0 chr3 82355319 82355387 -145169191 + L2 LINE L2 3244 3313 0 275 200 0 0 chr3 82355440 82355495 -145169083 + L1MB8 LINE L1 6123 6177 -1 1931 128 50 0 chr3 82355744 82356026 -145168552 + AluSx SINE Alu 2 297 -15 185 308 26 13 chr3 82356267 82356345 -145168233 - MIR SINE MIR -26 236 158 189 0 0 0 chr3 82356802 82356823 -145167755 + (TG)n Simple_repeat Simple_repeat 2 22 0 259 246 14 43 chr3 82356973 82357042 -145167536 - L2 LINE L2 0 3313 3247 25 0 0 0 chr3 82358355 82358380 -145166198 + AT_rich Low_complexity Low_complexity 1 25 0 296 209 0 0 chr3 82358491 82358558 -145166020 - HsTC2 DNA Tc2 -1 1897 1831 22 35 0 0 chr3 82358846 82358875 -145165703 + AT_rich Low_complexity Low_complexity 1 29 0 360 314 88 35 chr3 82358933 82359159 -145165419 + MER102b DNA MER1_type 103 340 -1 311 228 167 0 chr3 82360690 82360804 -145163774 - L1ME4a LINE L1 -5 6116 5984 227 321 48 0 chr3 82360920 82361004 -145163574 - L1MC4 LINE L1 -1341 6701 6614 * 251 204 0 0 chr3 82360986 82361040 -145163538 + L1MC4 LINE L1 6652 6705 -1337 * 348 228 0 22 chr3 82361022 82361114 -145163464 - L1MC4 LINE L1 -1339 6703 6614 459 265 149 47 chr3 82361203 82361652 -145162926 - L1ME4a LINE L1 -248 5873 5379 429 250 21 49 chr3 82361783 82361927 -145162651 - MIR SINE MIR -58 204 65 269 255 41 20 chr3 82362777 82362875 -145161703 - LTR67 LTR ERVL 0 557 458 1200 276 61 47 chr3 82363218 82363672 -145160906 + HAL1 LINE L1 510 973 -1534 333 0 0 0 chr3 82363672 82363709 -145160869 + (TA)n Simple_repeat Simple_repeat 1 37 0 1200 276 61 47 chr3 82363709 82363761 -145160817 + HAL1 LINE L1 973 1023 -1484 544 269 23 46 chr3 82363961 82364177 -145160401 + HAL1 LINE L1 1308 1518 -989 320 279 70 20 chr3 82364178 82364379 -145160199 + HAL1 LINE L1 2278 2488 -19 743 0 0 11 chr3 82364443 82364531 -145160047 + (GAAA)n Simple_repeat Simple_repeat 1 87 0 284 308 14 70 chr3 82364736 82364879 -145159699 - MLT1K LTR MaLR -181 407 273 1366 180 106 0 chr3 82365980 82366235 -145158343 + AluJb SINE Alu 1 282 -30 288 0 0 0 chr3 82366248 82366280 -145158298 + (CA)n Simple_repeat Simple_repeat 1 32 0 24 53 0 0 chr3 82366768 82366806 -145157772 + AT_rich Low_complexity Low_complexity 1 38 0 29 28 0 0 chr3 82367055 82367091 -145157487 + AT_rich Low_complexity Low_complexity 1 36 0 340 348 123 7 chr3 82369354 82369492 -145155086 + L2 LINE L2 3115 3268 -4 729 200 7 15 chr3 82369531 82369666 -145154912 + MLT1A1 LTR MaLR 180 313 -52 262 271 0 0 chr3 82370029 82370088 -145154490 - MIR SINE MIR -113 149 91 26 0 0 0 chr3 82371384 82371410 -145153168 + AT_rich Low_complexity Low_complexity 1 26 0 482 262 103 0 chr3 82373012 82373138 -145151440 - MER5A DNA MER1_type -50 139 1 2137 105 0 0 chr3 82373173 82373458 -145151120 + AluSx SINE Alu 9 293 -19 3844 209 133 67 chr3 82373519 82374987 -145149591 + pTR5 LTR ERV1 743 2438 0 415 253 154 29 chr3 82375130 82375442 -145149136 + L1M4 LINE L1 3256 3606 -2540 251 295 121 36 chr3 82375452 82375784 -145148794 - L1MEc LINE L1 -4752 1558 1199 2369 173 27 0 chr3 82375896 82376307 -145148271 - MSTB LTR MaLR 0 426 5 1128 130 35 10 chr3 82376309 82376509 -145148069 - MSTB-int LTR MaLR 0 1651 1447 4835 184 41 1 chr3 82376610 82377505 -145147073 - MSTB-int LTR MaLR -719 932 2 2464 158 42 2 chr3 82377506 82377916 -145146662 - MSTB LTR MaLR 0 426 1 619 282 37 45 chr3 82377917 82378293 -145146285 - L1MEc LINE L1 -5087 1032 660 5540 67 47 3 chr3 82378495 82379242 -145145336 + LTR17 LTR ERV1 1 780 0 286 314 22 22 chr3 82379266 82379403 -145145175 - L1MEc LINE L1 -5981 138 2 191 125 25 0 chr3 82379539 82379579 -145144999 + (CA)n Simple_repeat Simple_repeat 2 42 0 904 237 58 0 chr3 82380207 82380414 -145144164 + MER58A DNA MER1_type 6 224 0 345 281 16 25 chr3 82381025 82381146 -145143432 - MIR SINE MIR -109 153 34 22 0 0 0 chr3 82381418 82381440 -145143138 + AT_rich Low_complexity Low_complexity 1 22 0 640 283 70 35 chr3 82381866 82382180 -145142398 - MER102b DNA MER1_type 0 341 17 183 80 0 0 chr3 82382592 82382617 -145141961 + (T)n Simple_repeat Simple_repeat 1 25 0 3554 187 63 45 chr3 82383732 82384979 -145139599 - L1MB7 LINE L1 -17 6167 4909 288 262 83 0 chr3 82385022 82385106 -145139472 - L2 LINE L2 -660 2654 2564 515 282 176 18 chr3 82385488 82385910 -145138668 - MLT1G LTR MaLR -26 529 15 217 378 44 0 chr3 82386125 82386260 -145138318 - L2 LINE L2 -830 2484 2344 216 186 47 0 chr3 82387168 82387211 -145137367 + (CATATA)n Simple_repeat Simple_repeat 2 46 0 1470 166 39 91 chr3 82387323 82387708 -145136870 + MLT1A1 LTR MaLR 1 365 0 23 78 0 0 chr3 82387969 82388020 -145136558 + AT_rich Low_complexity Low_complexity 1 51 0 520 247 60 60 chr3 82388142 82388288 -145136290 - MIR SINE MIR -2 260 112 1986 140 90 58 chr3 82388288 82388701 -145135877 + MSTB LTR MaLR 1 426 0 520 247 60 60 chr3 82388701 82388736 -145135842 - MIR SINE MIR -149 113 79 189 0 0 0 chr3 82388944 82388965 -145135613 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 249 256 0 37 chr3 82389542 82389624 -145134954 + CT-rich Low_complexity Low_complexity 4 82 0 658 290 148 38 chr3 82390626 82391019 -145133559 - MLT1J LTR MaLR -3 508 73 244 220 0 0 chr3 82391307 82391357 -145133221 + (TAG)n Simple_repeat Simple_repeat 2 51 0 353 299 28 79 chr3 82391609 82391786 -145132792 + MIR SINE MIR 49 216 -46 1336 200 70 33 chr3 82392429 82392729 -145131849 + AluJo SINE Alu 2 312 0 910 103 40 11 chr3 82392751 82392925 -145131653 + GA-rich Low_complexity Low_complexity 1 179 0 1270 143 121 30 chr3 82393571 82393836 -145130742 - AluSx SINE Alu -2 310 22 180 0 0 0 chr3 82393841 82393861 -145130717 + (T)n Simple_repeat Simple_repeat 1 20 0 2218 208 60 20 chr3 82395654 82396455 -145128123 + L1PB4 LINE L1 5145 5986 -170 * 3610 158 33 32 chr3 82396029 82396758 -145127820 + L1MA8 LINE L1 5562 6291 0 191 190 17 0 chr3 82397552 82397610 -145126968 + (TA)n Simple_repeat Simple_repeat 2 60 0 5611 158 38 6 chr3 82398393 82398534 -145126044 - L1MA9 LINE L1 -4 6308 6173 306 0 0 0 chr3 82398534 82398568 -145126010 + (TG)n Simple_repeat Simple_repeat 1 34 0 5611 158 38 6 chr3 82398568 82399448 -145125130 - L1MA9 LINE L1 -139 6173 5254 2715 156 29 48 chr3 82399453 82399978 -145124600 - MLT2B2 LTR ERVL 0 515 1 13932 147 26 28 chr3 82399978 82400788 -145123790 - ERVL-B2 LTR ERVL -7 5757 4948 1386 172 38 69 chr3 82400788 82401108 -145123470 - AluJo SINE Alu -2 310 1 13932 147 26 28 chr3 82401108 82402657 -145121921 - ERVL-B2 LTR ERVL -816 4948 3401 621 160 83 14 chr3 82402672 82402816 -145121762 - L1MA9 LINE L1 -894 5252 5099 289 281 22 11 chr3 82403023 82403112 -145121466 + MIR SINE MIR 96 185 -77 392 335 36 27 chr3 82403250 82403474 -145121104 - MLT1L LTR MaLR -347 268 43 494 268 81 49 chr3 82404340 82404624 -145119954 - MLT1J1 LTR MaLR -1 445 153 39 22 0 0 chr3 82404729 82404775 -145119803 + AT_rich Low_complexity Low_complexity 1 46 0 334 327 12 43 chr3 82404832 82404994 -145119584 - MIR SINE MIR 0 262 106 2179 124 0 0 chr3 82405002 82405300 -145119278 + AluSx SINE Alu 1 298 -14 207 0 0 0 chr3 82406033 82406056 -145118522 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2329 82 0 0 chr3 82406059 82406341 -145118237 - AluSc SINE Alu -24 285 4 186 43 0 0 chr3 82406465 82406488 -145118090 + (TTTC)n Simple_repeat Simple_repeat 1 23 0 3896 70 23 0 chr3 82406488 82407001 -145117577 - L1PA7 LINE L1 0 6154 5630 294 269 62 76 chr3 82407043 82407188 -145117390 - L3 LINE CR1 -10 1567 1425 303 260 238 26 chr3 82407469 82407700 -145116878 - LTR33 LTR ERVL -234 287 8 555 90 0 0 chr3 82408069 82408088 -145116490 + (CA)n Simple_repeat Simple_repeat 1 97 0 555 90 0 0 chr3 82408088 82408166 -145116412 + (CA)n Simple_repeat Simple_repeat 1 78 0 1143 173 33 9 chr3 82411038 82411252 -145113326 + MER20 DNA MER1_type 1 219 0 25 31 0 0 chr3 82411257 82411289 -145113289 + AT_rich Low_complexity Low_complexity 1 32 0 525 287 137 63 chr3 82411341 82411707 -145112871 - L2 LINE L2 0 3313 2921 6310 111 27 2 chr3 82411998 82412969 -145111609 + L1MA3 LINE L1 5311 6305 0 2184 110 53 37 chr3 82413449 82413804 -145110774 - THE1B LTR MaLR 0 364 4 26 0 0 0 chr3 82415299 82415325 -145109253 + AT_rich Low_complexity Low_complexity 1 26 0 180 224 41 20 chr3 82415992 82416041 -145108537 - MER5A DNA MER1_type -83 106 57 407 196 28 105 chr3 82416100 82416243 -145108335 - MIR SINE MIR -111 151 20 763 192 20 0 chr3 82416314 82416460 -145108118 + MER5A DNA MER1_type 41 189 0 281 353 66 8 chr3 82417043 82417165 -145107413 - L2 LINE L2 0 3313 3185 960 253 29 27 chr3 82417413 82417705 -145106873 + LTR16C LTR ERVL 159 489 -2 270 323 120 24 chr3 82421336 82421503 -145103075 - L2 LINE L2 -830 2484 2302 15239 43 2 0 chr3 82421664 82424317 -145100261 + L1PA5 LINE L1 3484 6146 -8 1496 132 51 7 chr3 82424331 82424626 -145099952 + L1MA9 LINE L1 6003 6310 -2 1117 226 70 21 chr3 82424665 82424993 -145099585 - MER2 DNA MER2_type 0 344 1 255 256 31 54 chr3 82425056 82425185 -145099393 + L2 LINE L2 3119 3244 -69 2001 228 61 15 chr3 82425198 82425742 -145098836 - L1MC4a LINE L1 0 7808 7240 291 282 35 35 chr3 82425748 82425833 -145098745 + L2 LINE L2 3188 3272 0 188 313 0 30 chr3 82428082 82428149 -145096429 - MIR3 SINE MIR -6 202 138 246 310 47 70 chr3 82428357 82428404 -145096174 - MIR SINE MIR -63 145 98 2042 163 40 0 chr3 82428404 82428779 -145095799 + MLT1B LTR MaLR 1 390 0 246 310 47 70 chr3 82428779 82428860 -145095718 - MIR SINE MIR -110 98 20 549 330 10 20 chr3 82429283 82429483 -145095095 + MIR SINE MIR 7 204 -58 288 0 0 0 chr3 82429489 82429521 -145095057 + (TG)n Simple_repeat Simple_repeat 1 32 0 1750 210 44 13 chr3 82429575 82430303 -145094275 + L1ME1 LINE L1 4974 5719 -447 546 302 17 6 chr3 82430308 82430487 -145094091 + L1ME1 LINE L1 5981 6161 -5 605 258 172 29 chr3 82430677 82430886 -145093692 + MIR SINE MIR 23 261 -1 2107 159 51 32 chr3 82431017 82431550 -145093028 - MLT2A2 LTR ERVL 0 554 1 1466 190 17 7 chr3 82431550 82431840 -145092738 - MLT1B LTR MaLR -16 374 82 1359 220 36 0 chr3 82431840 82432117 -145092461 + AluJo SINE Alu 1 287 -25 305 259 47 12 chr3 82432142 82432227 -145092351 - MLT1B LTR MaLR -294 96 9 454 190 25 0 chr3 82432229 82432308 -145092270 + MER81 DNA DNA 30 110 -4 190 413 0 0 chr3 82433594 82433686 -145090892 + L2 LINE L2 2259 2350 -964 1168 282 62 3 chr3 82433695 82434067 -145090511 - LTR16C LTR ERVL -16 475 82 1068 252 12 38 chr3 82434085 82434426 -145090152 + MLT1A1 LTR MaLR 34 365 0 1000 317 57 41 chr3 82434535 82434610 -145089968 + L2 LINE L2 2396 2468 -845 2360 120 20 8 chr3 82434610 82434968 -145089610 - THE1B LTR MaLR 0 364 3 1000 317 57 41 chr3 82434968 82435782 -145088796 + L2 LINE L2 2468 3306 -7 1948 157 0 0 chr3 82435782 82436083 -145088495 + AluSx SINE Alu 1 301 0 593 281 36 84 chr3 82436201 82436536 -145088042 + L2 LINE L2 2994 3312 -1 39213 65 4 1 chr3 82436959 82443089 -145081489 - L1PA5 LINE L1 0 6154 4 887 169 175 0 chr3 82443548 82443725 -145080853 + AluJb SINE Alu 87 294 -18 429 287 52 31 chr3 82443726 82444012 -145080566 + L1ME4a LINE L1 5652 5943 -178 577 309 50 76 chr3 82444637 82445136 -145079442 - MLT1K LTR MaLR -2 586 101 231 281 0 0 chr3 82446842 82446899 -145077679 - L2 LINE L2 -8 3264 3208 193 316 92 0 chr3 82446903 82446979 -145077599 - L2 LINE L2 -498 2816 2734 287 313 30 15 chr3 82447517 82447651 -145076927 - L1ME LINE L1 -628 5605 5470 12154 42 2 0 chr3 82447964 82450195 -145074383 - L1PA5 LINE L1 0 6154 3890 2435 77 0 0 chr3 82450195 82450535 -145074043 + L1P LINE L1 3416 3755 -2391 1230 111 12 0 chr3 82450535 82450706 -145073872 - AluSc SINE Alu -134 175 3 396 151 113 0 chr3 82450708 82450814 -145073764 + Charlie5 DNA MER1_type 2468 2585 -27 350 354 58 27 chr3 82450814 82450942 -145073636 - L1ME LINE L1 -1914 4301 4178 2048 133 7 0 chr3 82450942 82451228 -145073350 + AluSx SINE Alu 1 288 -24 350 354 58 27 chr3 82451228 82451359 -145073219 - L1ME LINE L1 -2037 4178 4034 235 341 0 0 chr3 82451365 82451491 -145073087 - L1ME LINE L1 -2216 3999 3874 290 269 39 0 chr3 82451529 82451607 -145072971 - L2 LINE L2 -593 2721 2641 231 246 0 0 chr3 82451646 82451711 -145072867 - L1ME LINE L1 -3714 2501 2437 1634 114 4 0 chr3 82451738 82451983 -145072595 - L1PB1 LINE L1 0 6151 5906 6993 65 0 0 chr3 82451998 82452930 -145071648 - L1PA7 LINE L1 0 6154 5223 2276 117 0 0 chr3 82452930 82453289 -145071289 + L1P LINE L1 4826 5184 -962 254 272 99 12 chr3 82453288 82453450 -145071128 - L1ME LINE L1 -3775 2440 2265 * 618 270 65 15 chr3 82453505 82453842 -145070736 - L1ME LINE L1 -4092 2304 1951 1387 222 206 72 chr3 82453850 82454404 -145070174 + MLT1E3 LTR MaLR 10 607 -17 334 261 25 37 chr3 82454419 82454580 -145069998 - L1ME LINE L1 -4459 1937 1779 279 0 0 0 chr3 82454582 82454613 -145069965 + (TG)n Simple_repeat Simple_repeat 2 32 0 310 178 56 93 chr3 82455622 82455729 -145068849 + L1ME4a LINE L1 5968 6070 -51 378 283 92 30 chr3 82455992 82456167 -145068411 - MIR SINE MIR -69 139 2 896 232 16 0 chr3 82456169 82456354 -145068224 - MER5A DNA MER1_type -1 188 1 180 179 0 0 chr3 82457645 82457684 -145066894 + T-rich Low_complexity Low_complexity 5 43 0 281 253 13 0 chr3 82458030 82458105 -145066473 + MER117 DNA MER1_type 78 153 -44 1959 174 66 5 chr3 82458435 82458860 -145065718 + L1MB4 LINE L1 5729 6179 -1 643 272 158 22 chr3 82459225 82459681 -145064897 + MER113 DNA MER1_type? 1 518 -3 258 333 142 12 chr3 82459762 82459924 -145064654 - MIR SINE MIR 0 262 80 24 32 0 0 chr3 82460575 82460606 -145063972 + AT_rich Low_complexity Low_complexity 1 31 0 357 24 0 0 chr3 82460954 82460996 -145063582 + (TG)n Simple_repeat Simple_repeat 2 43 0 382 305 47 16 chr3 82461686 82461814 -145062764 - L2 LINE L2 0 3313 3182 642 323 62 57 chr3 82461861 82462263 -145062315 - L2 LINE L2 -37 3235 2832 706 236 200 22 chr3 82462391 82462666 -145061912 - MER5C DNA MER1_type 0 324 1 236 184 20 0 chr3 82462808 82462857 -145061721 + (TG)n Simple_repeat Simple_repeat 2 51 0 207 0 0 0 chr3 82464513 82464536 -145060042 + (A)n Simple_repeat Simple_repeat 1 23 0 275 288 74 58 chr3 82466367 82466745 -145057833 - L1MC4a LINE L1 -1878 5930 5547 1865 165 25 17 chr3 82466838 82467196 -145057382 - MLT1A1 LTR MaLR -2 363 3 2242 121 27 21 chr3 82467390 82467763 -145056815 - THE1C LTR MaLR 0 375 1 2534 57 0 0 chr3 82467854 82468152 -145056426 + AluY SINE Alu 1 298 -13 27 29 0 0 chr3 82468193 82468227 -145056351 + AT_rich Low_complexity Low_complexity 1 34 0 250 206 116 97 chr3 82468496 82468651 -145055927 - MER103 DNA DNA -3 163 6 419 230 11 0 chr3 82468896 82468983 -145055595 - L2 LINE L2 -5 3308 3221 22 35 0 0 chr3 82469056 82469085 -145055493 + AT_rich Low_complexity Low_complexity 1 29 0 269 290 109 51 chr3 82469132 82469425 -145055153 + L1ME LINE L1 5268 5577 -544 1440 168 35 16 chr3 82469429 82469745 -145054833 - MER33 DNA MER1_type 0 324 3 1397 199 8 0 chr3 82469780 82470042 -145054536 + Tigger7 DNA MER2_type 1 264 -469 15563 139 19 15 chr3 82470063 82472720 -145051858 - Tigger2 DNA MER2_type -1 2717 50 1664 160 115 45 chr3 82472720 82473120 -145051458 - MSTA LTR MaLR 0 428 1 2226 125 0 0 chr3 82473153 82473456 -145051122 - AluSx SINE Alu -9 303 1 1186 90 0 24 chr3 82473991 82474157 -145050421 - AluY SINE Alu -137 174 13 8996 146 21 33 chr3 82474157 82475752 -145048826 - MSTA-int LTR MaLR -2 1578 3 1845 158 129 21 chr3 82475754 82476140 -145048438 - MSTA LTR MaLR 0 428 1 260 222 0 0 chr3 82476140 82476194 -145048384 + MER8 DNA MER2_type 186 239 0 466 217 0 0 chr3 82476194 82476277 -145048301 + Tigger7 DNA MER2_type 2409 2491 0 255 301 11 0 chr3 82476358 82476451 -145048127 + L1ME LINE L1 5745 5838 -332 673 216 111 6 chr3 82477781 82477952 -145046626 + MER5A DNA MER1_type 1 189 0 338 216 246 22 chr3 82477985 82478119 -145046459 + MER5A DNA MER1_type 26 189 0 822 294 4 29 chr3 82478122 82478367 -145046211 + MIR SINE MIR 19 257 -5 270 0 0 0 chr3 82480198 82480228 -145044350 + (CA)n Simple_repeat Simple_repeat 1 30 0 306 381 40 0 chr3 82483385 82483511 -145041067 - MIR SINE MIR -113 149 19 355 281 158 7 chr3 82483846 82483985 -145040593 + MIR SINE MIR 85 244 -18 274 301 82 31 chr3 82484328 82484524 -145040054 + L1ME LINE L1 5328 5533 -588 464 335 36 6 chr3 82486540 82486707 -145037871 - MIR3 SINE MIR -3 205 34 254 224 13 0 chr3 82486836 82486938 -145037640 - MIR3 SINE MIR -7 201 123 735 167 26 39 chr3 82487410 82487566 -145037012 + THE1C LTR MaLR 222 375 0 245 236 42 0 chr3 82487826 82487898 -145036680 + MIR SINE MIR 128 202 -60 313 283 192 0 chr3 82488000 82488099 -145036479 - L2 LINE L2 -3 3310 3193 3857 50 34 0 chr3 82490159 82490714 -145033864 - L1P LINE L1 -1571 4575 4002 264 30 0 0 chr3 82490733 82490766 -145033812 + (TA)n Simple_repeat Simple_repeat 1 33 0 854 233 48 5 chr3 82490771 82490981 -145033597 + MER58A DNA MER1_type 5 223 -1 2756 160 4 6 chr3 82491746 82492554 -145032024 - L1MA1 LINE L1 -702 5602 4796 * 4066 75 39 31 chr3 82492545 82493187 -145031391 + L1MA1 LINE L1 5605 6251 -51 336 75 0 0 chr3 82493187 82493240 -145031338 - L1MA1 LINE L1 -30 6272 6220 22 0 0 0 chr3 82493264 82493286 -145031292 + AT_rich Low_complexity Low_complexity 1 22 0 877 251 106 4 chr3 82493448 82493675 -145030903 - MIR SINE MIR 0 262 13 2379 102 3 0 chr3 82498054 82498358 -145026220 - AluSp SINE Alu -8 305 1 234 0 0 0 chr3 82500071 82500097 -145024481 + (CAA)n Simple_repeat Simple_repeat 2 27 0 186 354 12 12 chr3 82501888 82501970 -145022608 + MIR3 SINE MIR 86 167 -41 294 345 43 0 chr3 82503476 82503592 -145020986 + MIR3 SINE MIR 82 202 -6 189 107 0 0 chr3 82504232 82504260 -145020318 + (CA)n Simple_repeat Simple_repeat 1 28 0 219 324 81 0 chr3 82504270 82504344 -145020234 + L2 LINE L2 3234 3313 0 596 263 155 0 chr3 82504774 82504987 -145019591 + Charlie8 DNA MER1_type 27 272 -2145 202 231 39 13 chr3 82505209 82505287 -145019291 + (TA)n Simple_repeat Simple_repeat 2 81 0 339 192 6 169 chr3 82505303 82505475 -145019103 + L1ME4a LINE L1 5950 6093 -28 426 229 179 21 chr3 82506372 82506512 -145018066 + MIR SINE MIR 31 192 -70 765 219 26 30 chr3 82506712 82506945 -145017633 + L1MB8 LINE L1 5945 6176 -2 217 302 151 0 chr3 82507030 82507136 -145017442 - L2 LINE L2 -235 3037 2916 28 0 0 0 chr3 82507327 82507355 -145017223 + AT_rich Low_complexity Low_complexity 1 28 0 216 320 41 0 chr3 82507850 82507947 -145016631 - MIR SINE MIR -91 117 17 1075 145 21 94 chr3 82508908 82509023 -145015555 - MER20 DNA MER1_type -1 218 127 2288 108 13 0 chr3 82509023 82509328 -145015250 - AluSg SINE Alu -1 309 1 1075 145 21 94 chr3 82509328 82509447 -145015131 - MER20 DNA MER1_type -92 127 1 1148 120 0 13 chr3 82511604 82511762 -145012816 + AluSg/x SINE Alu 140 295 -17 1979 134 0 23 chr3 82512590 82512895 -145011683 - AluSx SINE Alu -14 298 1 413 228 55 41 chr3 82513442 82513587 -145010991 + L1ME3A LINE L1 5944 6090 -80 698 260 67 31 chr3 82513651 82513913 -145010665 + L1MC/D LINE L1 5509 5778 -343 637 153 34 17 chr3 82513913 82514031 -145010547 + FLAM_A SINE Alu 1 120 -13 698 260 67 31 chr3 82514031 82514061 -145010517 + L1MC/D LINE L1 5778 5805 -316 28 48 0 0 chr3 82514310 82514352 -145010226 + AT_rich Low_complexity Low_complexity 1 42 0 1823 130 0 4 chr3 82514430 82514691 -145009887 - AluSx SINE Alu -14 298 39 278 245 132 47 chr3 82515068 82515174 -145009404 - MIR SINE MIR -77 131 30 319 296 42 7 chr3 82515558 82515700 -145008878 + MER117 DNA MER1_type 7 153 -44 404 265 135 39 chr3 82517201 82517431 -145007147 + MIR SINE MIR 8 259 -3 517 281 39 20 chr3 82517492 82517690 -145006888 + MIR SINE MIR 57 260 -2 280 298 41 35 chr3 82519112 82519283 -145005295 - Charlie8 DNA MER1_type -2152 265 94 288 323 24 31 chr3 82519610 82519737 -145004841 - L2 LINE L2 0 3313 3188 554 277 37 45 chr3 82519993 82520119 -145004459 - MIR SINE MIR -6 256 131 1659 176 163 3 chr3 82520119 82520488 -145004090 - MSTA LTR MaLR 0 428 1 554 277 37 45 chr3 82520488 82520603 -145003975 - MIR SINE MIR -131 131 17 2048 85 0 4 chr3 82520857 82521129 -145003449 + AluY SINE Alu 37 307 -4 619 221 16 0 chr3 82521846 82521973 -145002605 + FLAM_C SINE Alu 1 129 -14 211 204 0 0 chr3 82522083 82522127 -145002451 + GA-rich Low_complexity Low_complexity 3 46 0 26 50 0 0 chr3 82523121 82523161 -145001417 + AT_rich Low_complexity Low_complexity 1 40 0 2460 88 0 0 chr3 82523775 82524083 -145000495 + AluY SINE Alu 1 308 -3 303 299 234 0 chr3 82524237 82524391 -145000187 + MIR SINE MIR 12 201 -61 648 261 147 23 chr3 82524442 82524790 -144999788 - MLT1K LTR MaLR -2 586 196 220 278 112 66 chr3 82526754 82526793 -144997785 - L2 LINE L2 -126 3187 3151 850 116 8 0 chr3 82526793 82526922 -144997656 + FLAM_C SINE Alu 4 133 0 220 278 112 66 chr3 82526922 82527123 -144997455 - L2 LINE L2 -162 3151 2936 3028 253 177 47 chr3 82527142 82529001 -144995577 - L2 LINE L2 0 3313 1227 312 286 54 12 chr3 82529743 82529911 -144994667 + L1ME4a LINE L1 5695 5869 -252 304 271 93 9 chr3 82530016 82530123 -144994455 + L1ME4a LINE L1 5999 6114 -7 730 250 54 38 chr3 82530503 82530743 -144993835 - MIR SINE MIR -11 251 8 207 265 15 68 chr3 82530735 82530867 -144993711 - L2 LINE L2 -34 3279 3155 * 260 349 0 0 chr3 82530904 82530970 -144993608 + (CGTG)n Simple_repeat Simple_repeat 4 69 0 195 129 0 0 chr3 82534199 82534230 -144990348 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 269 355 121 7 chr3 82534554 82534695 -144989883 + MIR SINE MIR 5 161 -101 1027 157 89 16 chr3 82534962 82535210 -144989368 - L1MA9 LINE L1 0 6312 6047 251 344 89 0 chr3 82535810 82535990 -144988588 - L1MC/D LINE L1 -1987 5821 5626 391 292 65 30 chr3 82536074 82536357 -144988221 - L1MC/D LINE L1 -559 5603 5313 5875 117 10 0 chr3 82536367 82537605 -144986973 - L1PA15 LINE L1 -9 6156 4918 384 308 47 0 chr3 82538063 82538277 -144986301 - L1MC/D LINE L1 -1453 4693 4470 916 275 55 60 chr3 82538308 82538745 -144985833 - MLT1J LTR MaLR -49 462 28 2119 135 39 34 chr3 82538969 82539355 -144985223 + MLT1B LTR MaLR 3 390 0 420 346 191 8 chr3 82539358 82539875 -144984703 - L1MC/D LINE L1 -1926 4220 3609 1046 191 51 16 chr3 82540059 82540316 -144984262 - L1MA9 LINE L1 0 6312 6047 301 240 166 37 chr3 82540367 82540584 -144983994 - L1MC/D LINE L1 -3101 3045 2801 421 220 121 0 chr3 82540643 82540775 -144983803 + L1MC4a LINE L1 7660 7807 -1 414 278 150 5 chr3 82540884 82541071 -144983507 + MIR SINE MIR 2 215 -47 21 0 0 0 chr3 82541632 82541653 -144982925 + AT_rich Low_complexity Low_complexity 1 21 0 180 240 20 0 chr3 82541991 82542041 -144982537 - MIR SINE MIR -11 251 201 338 271 0 52 chr3 82542362 82542458 -144982120 - L2 LINE L2 -24 3289 3199 577 202 173 0 chr3 82542517 82542690 -144981888 - MER3 DNA MER1_type -6 203 1 5359 127 8 1 chr3 82544337 82545161 -144979417 + L1PA15 LINE L1 5334 6163 -2 1718 169 10 7 chr3 82546003 82546293 -144978285 + AluJo SINE Alu 3 293 -19 1447 214 46 3 chr3 82546318 82546641 -144977937 - MER58B DNA MER1_type 0 341 5 405 268 137 35 chr3 82546844 82547236 -144977342 + MLT1J2 LTR MaLR 1 449 -1 247 247 123 0 chr3 82547238 82547311 -144977267 + L2 LINE L2 3225 3306 -7 247 154 115 0 chr3 82547512 82547564 -144977014 - L2 LINE L2 -14 3258 3201 334 87 0 0 chr3 82547769 82547815 -144976763 - MER6 DNA MER2_type -3 862 817 * 2180 191 30 36 chr3 82547811 82548003 -144976575 - MER6 DNA MER2_type -429 436 244 258 32 0 0 chr3 82548003 82548034 -144976544 + (CA)n Simple_repeat Simple_repeat 1 31 0 2180 191 30 36 chr3 82548034 82548280 -144976298 - MER6 DNA MER2_type -621 244 1 235 302 81 70 chr3 82548286 82548544 -144976034 - L2 LINE L2 -78 3194 2934 1786 306 155 25 chr3 82548849 82550284 -144974294 - L2 LINE L2 -217 3096 1458 6130 26 6 0 chr3 82550342 82551059 -144973519 + L1PA3 LINE L1 5434 6154 -1 261 303 58 103 chr3 82551207 82551587 -144972991 - L3 LINE CR1 -541 1036 674 2342 126 80 5 chr3 82552024 82552422 -144972156 + MSTA LTR MaLR 1 428 0 434 315 52 80 chr3 82552736 82553085 -144971493 - MLT1I LTR MaLR 0 409 71 2333 174 14 7 chr3 82553132 82553569 -144971009 - L1MD1 LINE L1 -252 6785 6346 428 162 101 0 chr3 82553596 82553695 -144970883 - L1MA4 LINE L1 -3 6297 6189 * 1794 196 28 17 chr3 82553693 82554382 -144970196 - L1MD1 LINE L1 -696 6341 5644 2997 267 34 25 chr3 82554386 82555485 -144969093 - L1MD1 LINE L1 -2001 4940 3832 274 165 101 38 chr3 82555535 82555614 -144968964 - L1MD1 LINE L1 -3084 3857 3774 2192 186 173 23 chr3 82555615 82556635 -144967943 - L1MD1 LINE L1 -3363 3578 2399 408 20 0 0 chr3 82556635 82556684 -144967894 + (TG)n Simple_repeat Simple_repeat 2 50 0 2192 186 173 23 chr3 82556684 82556763 -144967815 - L1MD1 LINE L1 -4542 2399 2333 1657 200 44 46 chr3 82556761 82556958 -144967620 - L1MD1 LINE L1 -5038 1903 1707 * 1728 169 3 14 chr3 82556958 82557254 -144967324 + AluJb SINE Alu 1 293 -19 1657 200 44 46 chr3 82557254 82557576 -144967002 - L1MD1 LINE L1 -5234 1707 1385 1995 148 42 22 chr3 82558363 82558720 -144965858 + THE1B LTR MaLR 1 364 0 721 209 6 12 chr3 82558772 82558944 -144965634 - L1MD1 LINE L1 -6181 242 72 * 38087 46 3 4 chr3 82558938 82564478 -144960100 - L1PA5 LINE L1 0 6154 623 696 100 0 0 chr3 82564474 82564564 -144960014 - L1PA5 LINE L1 -6046 100 11 * 2276 256 69 14 chr3 82564573 82565208 -144959370 - L1MDa LINE L1 -5541 999 122 317 275 92 75 chr3 82565706 82566011 -144958567 + L2 LINE L2 2187 2496 -818 4056 208 25 1 chr3 82566015 82566904 -144957674 + MER63C DNA MER1_type 12 921 -9 304 401 53 24 chr3 82566911 82567118 -144957460 + L2 LINE L2 2493 2705 -609 716 299 48 44 chr3 82567153 82567718 -144956860 - L2 LINE L2 0 3313 2684 318 344 18 18 chr3 82567703 82567866 -144956712 + L2 LINE L2 2718 2880 -434 * 445 296 59 13 chr3 82567993 82568145 -144956433 + L2 LINE L2 3155 3313 0 237 368 0 11 chr3 82568145 82568232 -144956346 + L2 LINE L2 3187 3272 0 226 155 52 0 chr3 82568237 82568295 -144956283 + (TGAA)n Simple_repeat Simple_repeat 3 63 0 182 256 0 11 chr3 82568383 82568473 -144956105 + (TGAA)n Simple_repeat Simple_repeat 1 89 0 324 0 0 0 chr3 82569162 82569198 -144955380 + (TG)n Simple_repeat Simple_repeat 2 37 0 23 33 0 0 chr3 82571734 82571764 -144952814 + AT_rich Low_complexity Low_complexity 1 30 0 261 0 0 0 chr3 82575198 82575227 -144949351 + (A)n Simple_repeat Simple_repeat 1 29 0 1897 168 0 13 chr3 82575343 82575653 -144948925 - AluJb SINE Alu -6 306 1 232 361 83 0 chr3 82576101 82576209 -144948369 + L2 LINE L2 3141 3257 -15 611 146 39 0 chr3 82576213 82576316 -144948262 + U6 snRNA snRNA 1 107 0 1729 191 21 18 chr3 82576319 82576706 -144947872 + L1MA4 LINE L1 5907 6294 -6 35 0 0 0 chr3 82576706 82576741 -144947837 + AT_rich Low_complexity Low_complexity 1 35 0 591 258 33 31 chr3 82576888 82577254 -144947324 - MLT1J2 LTR MaLR -2 448 51 183 236 0 55 chr3 82577822 82577877 -144946701 - L2 LINE L2 -2032 1282 1231 1011 217 64 19 chr3 82578389 82578703 -144945875 - HsTC2 DNA Tc2 -3 1895 1568 261 184 0 20 chr3 82578742 82578791 -144945787 - HsTC2 DNA Tc2 -558 1340 1293 226 267 0 50 chr3 82578805 82578865 -144945713 - HsTC2 DNA Tc2 -1762 136 80 2021 132 4 0 chr3 82580612 82580893 -144943685 + AluSx SINE Alu 1 282 -30 324 0 0 0 chr3 82580895 82580931 -144943647 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 414 319 58 27 chr3 82580933 82581121 -144943457 - MIR SINE MIR -57 205 12 421 265 76 45 chr3 82583788 82584011 -144940567 - L2 LINE L2 -2 3311 3082 246 289 48 58 chr3 82584027 82584131 -144940447 - L2 LINE L2 -1 3271 3169 605 279 93 68 chr3 82584840 82585358 -144939220 + L1M4 LINE L1 1056 1703 -4924 201 74 0 0 chr3 82585358 82585385 -144939193 + (A)n Simple_repeat Simple_repeat 1 27 0 605 279 93 68 chr3 82585385 82585439 -144939139 + L1M4 LINE L1 1703 1754 -4873 317 279 64 14 chr3 82585457 82585597 -144938981 + MER103 DNA DNA 7 153 -13 1351 199 69 46 chr3 82585852 82586174 -144938404 + MLT1C LTR MaLR 25 361 -106 1941 150 0 38 chr3 82586174 82586521 -144938057 + MER1B DNA MER1_type 1 334 -3 1351 199 69 46 chr3 82586521 82586631 -144937947 + MLT1C LTR MaLR 361 467 0 437 316 32 0 chr3 82586697 82586841 -144937737 - MIR SINE MIR -46 162 13 2328 87 13 0 chr3 82587967 82588266 -144936312 + AluSx SINE Alu 1 303 -9 283 297 130 38 chr3 82588317 82588502 -144936076 - MLT1K LTR MaLR -286 302 101 198 0 0 0 chr3 82592392 82592414 -144932164 + (CA)n Simple_repeat Simple_repeat 1 22 0 2037 192 3 6 chr3 82593658 82594023 -144930555 + MLT1A1 LTR MaLR 1 364 -1 233 29 29 0 chr3 82594366 82594400 -144930178 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 280 198 22 66 chr3 82594419 82594510 -144930068 - LTR67 LTR ERVL -20 537 451 1753 166 0 27 chr3 82594971 82595266 -144929312 + AluSx SINE Alu 1 287 -25 264 122 0 0 chr3 82595275 82595316 -144929262 + (CA)n Simple_repeat Simple_repeat 2 42 0 911 231 19 12 chr3 82595648 82595904 -144928674 + L1MD3 LINE L1 7729 7986 -9 489 290 23 117 chr3 82596921 82597307 -144927271 + MLT1K LTR MaLR 3 352 -236 915 158 24 12 chr3 82597821 82598011 -144926567 - AluJb SINE Alu 0 312 134 375 278 151 14 chr3 82598011 82598223 -144926355 + MIR SINE MIR 20 260 -2 305 307 8 39 chr3 82598313 82598440 -144926138 + L2 LINE L2 2237 2359 -955 215 314 119 56 chr3 82598445 82598906 -144925672 + L2 LINE L2 2476 2965 -349 1501 162 63 93 chr3 82599180 82599459 -144925119 + Charlie4a DNA MER1_type 27 286 -1675 2209 125 7 0 chr3 82599459 82599763 -144924815 + AluSq SINE Alu 1 306 -7 1501 162 63 93 chr3 82599763 82599978 -144924600 + Charlie4a DNA MER1_type 286 506 -2 333 248 50 25 chr3 82599980 82600101 -144924477 + L2 LINE L2 3189 3312 -1 234 226 381 0 chr3 82601127 82601211 -144923367 + MER5A DNA MER1_type 74 189 0 22 0 0 0 chr3 82602186 82602208 -144922370 + AT_rich Low_complexity Low_complexity 1 22 0 1635 165 68 0 chr3 82602514 82602665 -144921913 - AluJb SINE Alu -22 290 151 207 0 0 0 chr3 82602665 82602688 -144921890 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1635 165 68 0 chr3 82602688 82602802 -144921776 - AluJb SINE Alu -161 151 7 243 328 0 0 chr3 82603118 82603182 -144921396 + MER5A DNA MER1_type 63 126 -63 1851 171 0 22 chr3 82603195 82603510 -144921068 - AluSx SINE Alu 0 312 5 1844 148 58 45 chr3 82603912 82604271 -144920307 + THE1B LTR MaLR 1 364 0 344 236 52 57 chr3 82604431 82604656 -144919922 - MLT1L LTR MaLR -325 290 3 294 278 33 0 chr3 82605906 82605996 -144918582 + L2 LINE L2 2519 2611 -703 650 288 71 62 chr3 82606096 82606760 -144917818 + L2 LINE L2 2551 3312 -1 587 257 146 13 chr3 82608432 82608653 -144915925 - MIR SINE MIR -1 261 10 201 208 19 19 chr3 82609006 82609059 -144915519 + CT-rich Low_complexity Low_complexity 1 53 0 1889 115 6 86 chr3 82609414 82609728 -144914850 - AluSx SINE Alu -23 289 1 1017 162 50 6 chr3 82610553 82610732 -144913846 - MER5A DNA MER1_type -1 188 2 282 253 0 0 chr3 82611062 82611137 -144913441 + HsTC2 DNA Tc2 1 75 -1823 610 254 29 19 chr3 82611449 82611654 -144912924 + HsTC2 DNA Tc2 1685 1891 -7 843 223 0 49 chr3 82611848 82612072 -144912506 - MER58A DNA MER1_type 0 224 12 1689 166 92 26 chr3 82612153 82612568 -144912010 - L1MB7 LINE L1 -8 6176 5735 2245 160 61 17 chr3 82612655 82613062 -144911516 + MSTA LTR MaLR 1 425 -3 771 291 158 16 chr3 82613282 82613667 -144910911 - L2 LINE L2 -12 3301 2862 1225 141 5 5 chr3 82614058 82614250 -144910328 - AluJo SINE Alu 0 312 121 15154 98 2 0 chr3 82614270 82617205 -144907373 - L1PA8 LINE L1 -14 6158 3200 1192 108 6 0 chr3 82617206 82617373 -144907205 + AluSq SINE Alu 145 312 -1 194 0 39 0 chr3 82617664 82617690 -144906888 + (TA)n Simple_repeat Simple_repeat 1 27 0 1246 157 0 5 chr3 82618839 82619036 -144905542 + AluJb SINE Alu 12 207 -105 189 0 0 0 chr3 82620138 82620159 -144904419 + (GA)n Simple_repeat Simple_repeat 2 22 0 208 338 88 61 chr3 82620900 82621048 -144903530 + MER5A DNA MER1_type 38 189 0 1346 235 60 108 chr3 82623184 82623758 -144900820 + MLT1E LTR MaLR 1 544 -49 1999 141 28 0 chr3 82623758 82624048 -144900530 + AluJb SINE Alu 1 298 -14 1346 235 60 108 chr3 82624048 82624095 -144900483 + MLT1E LTR MaLR 544 592 -1 271 246 123 46 chr3 82625106 82625236 -144899342 - MIR SINE MIR -12 250 111 432 338 0 13 chr3 82625500 82625654 -144898924 + MIR3 SINE MIR 45 196 -12 186 133 0 0 chr3 82625746 82625776 -144898802 + (TA)n Simple_repeat Simple_repeat 2 31 0 541 229 129 12 chr3 82627377 82627547 -144897031 - MER2 DNA MER2_type 0 345 156 1867 171 68 32 chr3 82627569 82628009 -144896569 + LTR2B LTR ERV1 35 490 0 766 174 12 54 chr3 82628009 82628175 -144896403 - MER2 DNA MER2_type -186 159 1 308 125 47 0 chr3 82628799 82628863 -144895715 + MER92C LTR ERV1 488 554 0 374 248 18 18 chr3 82629228 82629341 -144895237 + MER31-int LTR ERV1 4359 4471 -465 382 280 0 10 chr3 82629962 82630062 -144894516 + MER92C LTR ERV1 7 105 -449 335 131 16 0 chr3 82630260 82630321 -144894257 + MER92C LTR ERV1 493 554 0 2082 137 6 13 chr3 82631440 82631778 -144892800 + AluJb SINE Alu 1 336 0 237 239 14 14 chr3 82631984 82632055 -144892523 - MLT1K LTR MaLR -4 584 514 284 273 44 124 chr3 82632155 82632518 -144892060 - L2 LINE L2 -60 3253 2920 917 179 32 61 chr3 82632518 82632798 -144891780 - Charlie5 DNA MER1_type 0 2624 2353 848 198 0 35 chr3 82632802 82633004 -144891574 - Charlie5 DNA MER1_type -2417 195 1 201 377 85 0 chr3 82633009 82633139 -144891439 - L2 LINE L2 -434 2880 2740 1705 228 96 13 chr3 82633139 82633577 -144891001 - MLT1D LTR MaLR 0 505 31 1297 261 103 22 chr3 82633577 82634085 -144890493 - MER34 LTR ERV1 0 542 1 188 325 0 26 chr3 82634101 82634178 -144890400 - L2 LINE L2 -570 2744 2670 806 295 49 45 chr3 82634390 82634817 -144889761 + MLT1K LTR MaLR 158 586 -2 262 254 0 0 chr3 82635792 82635851 -144888727 - L2 LINE L2 0 3313 3255 936 94 0 0 chr3 82635861 82635978 -144888600 - AluSq/x SINE Alu -196 117 1 1247 195 66 102 chr3 82636205 82636616 -144887962 + MSTD LTR MaLR 1 396 0 602 273 24 34 chr3 82637004 82637213 -144887365 + L2 LINE L2 3107 3313 0 245 333 167 0 chr3 82637448 82637539 -144887039 + L2 LINE L2 3125 3244 -28 2633 181 58 21 chr3 82637539 82638024 -144886554 + MLT1D LTR MaLR 3 505 0 245 333 167 0 chr3 82638024 82638058 -144886520 + L2 LINE L2 3244 3271 -1 1857 187 78 19 chr3 82639093 82639245 -144885333 + MSTD LTR MaLR 1 143 -253 2180 154 31 11 chr3 82639245 82639602 -144884976 + THE1B LTR MaLR 1 364 0 1857 187 78 19 chr3 82639602 82639823 -144884755 + MSTD LTR MaLR 143 396 0 184 305 172 39 chr3 82640363 82640491 -144884087 + L2 LINE L2 3169 3313 0 305 269 65 9 chr3 82642906 82643014 -144881564 + MIR SINE MIR 2 115 -147 2657 147 23 14 chr3 82643040 82643468 -144881110 + MSTB1 LTR MaLR 1 432 0 2314 107 0 3 chr3 82643682 82643991 -144880587 - AluSq SINE Alu 0 313 6 21 0 0 0 chr3 82643997 82644018 -144880560 + AT_rich Low_complexity Low_complexity 1 21 0 470 314 76 0 chr3 82644368 82644540 -144880038 - MIR SINE MIR -6 256 72 260 271 0 17 chr3 82644670 82644729 -144879849 - MIR SINE MIR -203 59 2 301 231 0 77 chr3 82645601 82645705 -144878873 - LTR67 LTR ERVL -2 555 460 319 246 140 58 chr3 82645849 82646056 -144878522 - MLT1J LTR MaLR -193 318 95 228 167 74 56 chr3 82646013 82646067 -144878511 - LTR67 LTR ERVL -418 139 85 * 1241 161 13 61 chr3 82646109 82646339 -144878239 - MER20 DNA MER1_type 0 219 1 571 89 13 0 chr3 82646718 82646797 -144877781 + MADE1 DNA Mariner 1 80 0 247 339 37 9 chr3 82646912 82647021 -144877557 + MIR3 SINE MIR 82 193 -15 2305 144 30 11 chr3 82647030 82647398 -144877180 + THE1C LTR MaLR 1 375 0 1209 223 27 72 chr3 82649346 82649863 -144874715 - L1MC4 LINE L1 0 7877 7309 2042 92 7 4 chr3 82650514 82650787 -144873791 + AluSq SINE Alu 1 274 -39 534 107 0 0 chr3 82650787 82650862 -144873716 + AluSp/q SINE Alu 229 303 -10 553 212 71 66 chr3 82650863 82650959 -144873619 + MIR SINE MIR 46 140 -122 2099 132 7 0 chr3 82650959 82651262 -144873316 + AluSx SINE Alu 1 305 -7 553 212 71 66 chr3 82651262 82651363 -144873215 + MIR SINE MIR 140 244 -18 3036 167 29 13 chr3 82651431 82651975 -144872603 + L1MC2 LINE L1 5780 6332 -12 368 306 0 0 chr3 82652945 82653043 -144871535 - MIR SINE MIR -2 260 163 2325 87 3 13 chr3 82653401 82653711 -144870867 + AluSx SINE Alu 1 307 -5 955 234 0 0 chr3 82653750 82653938 -144870640 - MER5A DNA MER1_type -1 188 1 419 317 70 25 chr3 82653946 82654189 -144870389 + Charlie8 DNA MER1_type 1 254 -2163 1445 191 106 24 chr3 82654709 82655039 -144869539 + MLT1A1 LTR MaLR 9 365 0 24 0 0 0 chr3 82655830 82655854 -144868724 + AT_rich Low_complexity Low_complexity 1 24 0 860 154 0 0 chr3 82656213 82656349 -144868229 - FRAM SINE Alu -20 156 21 192 261 116 14 chr3 82656434 82656503 -144868075 - MER5A DNA MER1_type 0 189 114 836 125 69 7 chr3 82656503 82656647 -144867931 - LTR32 LTR ERVL 0 471 319 1847 151 24 24 chr3 82656705 82657037 -144867541 - LTR32 LTR ERVL -125 346 15 201 318 45 0 chr3 82657050 82657116 -144867462 - MER5B DNA MER1_type -109 69 1 1868 116 26 11 chr3 82657135 82657403 -144867175 + AluSx SINE Alu 21 292 -20 899 206 21 16 chr3 82657409 82657598 -144866980 - MER20 DNA MER1_type -3 216 27 1253 188 35 138 chr3 82659445 82659871 -144864707 + MLT1C LTR MaLR 7 465 -2 41614 51 3 50 chr3 82660531 82662287 -144862291 - L1PA4 LINE L1 -20 6135 4297 1414 110 25 46 chr3 82662287 82662524 -144862054 - LTR10A LTR ERV1 -61 548 317 41614 51 3 50 chr3 82662524 82666981 -144857597 - L1PA4 LINE L1 -1858 4297 2 22 70 0 0 chr3 82667122 82667165 -144857413 + AT_rich Low_complexity Low_complexity 1 43 0 4899 214 33 52 chr3 82668968 82671099 -144853479 + L1MD2 LINE L1 4257 6341 -18 189 274 0 48 chr3 82671634 82671696 -144852882 - L2 LINE L2 0 3313 3255 526 304 91 12 chr3 82671922 82672165 -144852413 - MIR SINE MIR 0 262 1 186 255 59 0 chr3 82672222 82672273 -144852305 - MER5A DNA MER1_type -98 91 38 1046 304 105 21 chr3 82672574 82673283 -144851295 - L2 LINE L2 -106 3207 2429 1969 128 3 33 chr3 82673343 82673648 -144850930 + AluSx SINE Alu 1 296 -16 200 311 27 40 chr3 82673648 82673722 -144850856 - L2 LINE L2 -242 3030 2958 356 321 134 5 chr3 82674054 82674278 -144850300 - L2 LINE L2 0 3313 3061 733 329 60 11 chr3 82675045 82675392 -144849186 + MLT1I LTR MaLR 41 404 -5 267 262 63 45 chr3 82675530 82675641 -144848937 + MIR SINE MIR 38 151 -57 2221 109 0 19 chr3 82676024 82676336 -144848242 - AluSx SINE Alu -6 306 1 716 291 73 33 chr3 82676555 82676885 -144847693 - MLT1I LTR MaLR -51 358 16 613 248 24 24 chr3 82678312 82678708 -144845870 - L1MC5 LINE L1 -271 7690 7261 861 194 62 47 chr3 82679462 82679673 -144844905 - MER20 DNA MER1_type -5 214 1 267 287 11 43 chr3 82679799 82679893 -144844685 + MIR SINE MIR 13 103 -159 219 306 144 27 chr3 82679950 82680061 -144844517 - MER5A DNA MER1_type -20 169 46 4555 161 26 33 chr3 82680131 82680613 -144843965 - L1MB3 LINE L1 -9 6174 5699 2080 136 3 16 chr3 82680613 82680929 -144843649 + AluSx SINE Alu 1 312 0 4555 161 26 33 chr3 82680929 82681319 -144843259 - L1MB3 LINE L1 -484 5699 5308 419 262 42 93 chr3 82681322 82681484 -144843094 + MIR SINE MIR 10 160 -102 2088 136 0 0 chr3 82681484 82681771 -144842807 - AluSx SINE Alu -25 287 1 419 262 42 93 chr3 82681771 82681822 -144842756 + MIR SINE MIR 160 212 -50 1815 175 3 10 chr3 82682027 82682341 -144842237 + AluJb SINE Alu 1 312 0 497 301 75 0 chr3 82683549 82683722 -144840856 + MIR SINE MIR 28 213 -49 260 281 126 59 chr3 82683738 82683812 -144840766 - MIR SINE MIR -106 156 88 714 159 40 99 chr3 82683812 82683913 -144840665 - MER53 DNA DNA 0 189 104 1224 193 32 54 chr3 82683913 82684229 -144840349 - AluJo SINE Alu -3 309 1 714 159 40 99 chr3 82684229 82684328 -144840250 - MER53 DNA DNA -85 104 1 260 281 126 59 chr3 82684328 82684388 -144840190 - MIR SINE MIR -174 88 13 395 276 78 31 chr3 82684474 82684666 -144839912 - MIR SINE MIR -16 246 46 233 274 27 14 chr3 82685415 82685488 -144839090 - L2 LINE L2 -1 3271 3198 1913 68 0 8 chr3 82685513 82685748 -144838830 - AluY SINE Alu -12 299 67 452 288 38 38 chr3 82686082 82686180 -144838398 - MLT1K LTR MaLR -4 584 484 2029 143 3 13 chr3 82686180 82686480 -144838098 + AluSx SINE Alu 1 297 -15 452 288 38 38 chr3 82686480 82686565 -144838013 - MLT1K LTR MaLR -103 485 401 430 307 95 6 chr3 82687167 82687346 -144837232 + MIR SINE MIR 65 259 -3 755 194 7 0 chr3 82687430 82687569 -144837009 - MER45A DNA AcHobo -8 170 31 27 62 0 0 chr3 82688114 82688162 -144836416 + AT_rich Low_complexity Low_complexity 1 48 0 467 110 96 0 chr3 82689175 82689248 -144835330 + AluJ/FLAM SINE Alu 5 84 -228 1577 154 66 29 chr3 82689260 82689580 -144834998 - AluJo SINE Alu 0 330 1 997 232 0 0 chr3 82689781 82689988 -144834590 + MER58A DNA MER1_type 2 208 -16 236 356 96 17 chr3 82690063 82690178 -144834400 - MIR SINE MIR -137 125 2 348 300 58 8 chr3 82690677 82690797 -144833781 + MIR SINE MIR 63 188 -74 2713 94 6 3 chr3 82691198 82691561 -144833017 + THE1B LTR MaLR 1 364 0 222 364 79 18 chr3 82691757 82691922 -144832656 - MIR SINE MIR -18 244 70 452 248 46 75 chr3 82692937 82693002 -144831576 - MIR SINE MIR -53 209 144 2016 148 7 0 chr3 82693002 82693300 -144831278 - AluSx SINE Alu -4 308 9 452 248 46 75 chr3 82693300 82693431 -144831147 - MIR SINE MIR -118 144 30 265 260 57 65 chr3 82693389 82693512 -144831066 + MIR SINE MIR 50 171 -91 * 2080 148 3 0 chr3 82694044 82694355 -144830223 - AluSx SINE Alu 0 312 1 208 315 8 161 chr3 82694385 82694645 -144829933 + L2 LINE L2 3041 3260 -12 858 156 0 0 chr3 82694663 82694798 -144829780 + FRAM SINE Alu 17 151 -25 1605 170 5 106 chr3 82695906 82696311 -144828267 + MER47A DNA MER2_type 1 364 -2 240 137 84 8 chr3 82696312 82696443 -144828135 + (TA)n Simple_repeat Simple_repeat 2 142 0 310 189 11 78 chr3 82696456 82696636 -144827942 + (TA)n Simple_repeat Simple_repeat 2 169 0 1046 149 0 0 chr3 82696654 82696835 -144827743 - MLT2B2 LTR ERVL -334 181 1 1552 189 21 28 chr3 82696941 82697232 -144827346 + AluJo SINE Alu 5 293 -19 1379 138 118 10 chr3 82697607 82697896 -144826682 + L1MA9 LINE L1 5992 6311 -1 391 198 0 12 chr3 82699392 82699473 -144825105 + L1ME3A LINE L1 5912 5991 -179 1313 173 0 68 chr3 82699533 82699782 -144824796 - AluJo SINE Alu -34 278 47 1294 190 23 13 chr3 82699789 82700089 -144824489 - L1MD3 LINE L1 -935 7060 6758 562 278 64 12 chr3 82700316 82700489 -144824089 + MIR SINE MIR 81 262 0 301 248 44 9 chr3 82701591 82701704 -144822874 + MER117 DNA MER1_type 9 125 -72 1642 200 13 23 chr3 82702020 82702330 -144822248 + AluJo SINE Alu 1 307 -5 1121 290 59 14 chr3 82702525 82703119 -144821459 - L1ME3A LINE L1 -248 5991 5371 484 309 77 8 chr3 82703146 82703509 -144821069 - L1ME3A LINE L1 -1131 5084 4697 1648 201 0 3 chr3 82703776 82704065 -144820513 - AluJb SINE Alu -24 288 1 266 290 55 6 chr3 82704069 82704232 -144820346 - L1ME3A LINE L1 -1958 4257 4084 313 315 49 39 chr3 82704442 82704750 -144819828 - L1ME3A LINE L1 -2317 3898 3588 3324 235 81 40 chr3 82705103 82707096 -144817482 - L1ME1 LINE L1 -4 6660 4596 258 272 43 49 chr3 82707101 82707171 -144817407 - L1ME1 LINE L1 -4902 1786 1717 2263 82 0 3 chr3 82707171 82707462 -144817116 - AluY SINE Alu -21 290 1 258 272 43 49 chr3 82707462 82707575 -144817003 - L1ME1 LINE L1 -4971 1717 1458 2289 209 68 23 chr3 82707605 82708314 -144816264 - L1ME1 LINE L1 -5197 1628 888 21 36 0 0 chr3 82708503 82708531 -144816047 + AT_rich Low_complexity Low_complexity 1 28 0 665 286 86 44 chr3 82708607 82708992 -144815586 - L1ME3A LINE L1 -3379 2836 2436 372 283 165 32 chr3 82709063 82709342 -144815236 - L1ME3A LINE L1 -3920 2476 2161 2248 102 0 10 chr3 82709742 82710037 -144814541 + AluSx SINE Alu 1 292 -20 1132 281 132 24 chr3 82712164 82713078 -144811500 + L2 LINE L2 2249 3309 -4 2157 135 0 0 chr3 82713789 82714086 -144810492 - AluSx SINE Alu -14 298 2 290 269 37 28 chr3 82714607 82714715 -144809863 + L2 LINE L2 2871 2979 -334 545 211 46 26 chr3 82714716 82714868 -144809710 - MLT1K LTR MaLR 0 588 434 291 271 205 27 chr3 82715487 82715692 -144808886 - MIR SINE MIR -12 250 11 1938 106 13 68 chr3 82716150 82716461 -144808117 - AluSx SINE Alu -18 294 1 197 344 33 71 chr3 82716599 82716703 -144807875 + MIR SINE MIR 16 112 -150 2272 106 0 10 chr3 82716703 82717015 -144807563 + AluSx SINE Alu 1 309 -3 197 344 33 71 chr3 82717015 82717093 -144807485 + MIR SINE MIR 112 191 -71 185 333 17 0 chr3 82717141 82717201 -144807377 + MIR SINE MIR 27 87 -175 637 252 85 91 chr3 82717208 82717669 -144806909 - L2 LINE L2 0 3313 2856 262 260 154 0 chr3 82717670 82717774 -144806804 + MIR SINE MIR 92 211 -51 352 345 77 31 chr3 82717899 82718160 -144806418 + L2 LINE L2 2944 3216 -56 229 260 0 0 chr3 82718174 82718224 -144806354 + (TGGA)n Simple_repeat Simple_repeat 1 50 0 415 327 43 6 chr3 82718376 82718538 -144806040 - MIR3 SINE MIR -6 202 35 266 60 4 0 chr3 82718774 82718819 -144805759 - L1PA16 LINE L1 -2 6154 6109 231 36 0 0 chr3 82720268 82720296 -144804282 + (GAAA)n Simple_repeat Simple_repeat 3 30 0 26 50 0 0 chr3 82720809 82720849 -144803729 + AT_rich Low_complexity Low_complexity 1 40 0 192 40 0 0 chr3 82721680 82721705 -144802873 + (CA)n Simple_repeat Simple_repeat 2 26 0 225 0 0 0 chr3 82722773 82722798 -144801780 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 285 98 0 0 chr3 82723715 82723756 -144800822 + (CA)n Simple_repeat Simple_repeat 2 42 0 351 0 0 0 chr3 82724633 82724672 -144799906 + (T)n Simple_repeat Simple_repeat 1 39 0 240 111 0 0 chr3 82726095 82726131 -144798447 + (A)n Simple_repeat Simple_repeat 1 36 0 270 0 0 0 chr3 82726636 82726666 -144797912 + (A)n Simple_repeat Simple_repeat 1 30 0 668 243 30 20 chr3 82727398 82727600 -144796978 - MER3 DNA MER1_type -5 204 1 516 206 233 0 chr3 82727652 82727798 -144796780 - MER5A DNA MER1_type -6 183 4 2331 41 41 10 chr3 82728740 82729030 -144795548 - AluY SINE Alu -12 299 1 1950 142 0 0 chr3 82729125 82729429 -144795149 - AluSx SINE Alu 0 304 1 535 230 36 133 chr3 82729573 82729678 -144794900 - MER45A DNA AcHobo -1404 177 98 766 183 0 8 chr3 82729678 82729804 -144794774 + FLAM_A SINE Alu 1 125 -8 535 230 36 133 chr3 82729804 82729894 -144794684 - MER45A DNA AcHobo -1483 98 1 411 268 35 45 chr3 82730170 82730368 -144794210 - L1ME LINE L1 -394 5727 5532 514 78 6 0 chr3 82730858 82730949 -144793629 + L1MA4 LINE L1 6198 6290 -10 192 125 0 0 chr3 82735522 82735554 -144789024 + (T)n Simple_repeat Simple_repeat 1 32 0 306 67 0 0 chr3 82735582 82735627 -144788951 + (T)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr3 82737275 82737297 -144787281 + AT_rich Low_complexity Low_complexity 1 22 0 373 213 328 11 chr3 82737519 82737693 -144786885 - MER106A DNA MER1_type -7 229 1 185 0 0 39 chr3 82741132 82741158 -144783420 + (CCCCG)n Simple_repeat Simple_repeat 1 25 0 1777 173 24 3 chr3 82742196 82742491 -144782087 - AluJo SINE Alu -11 301 1 1982 135 0 13 chr3 82743948 82744252 -144780326 - AluJo SINE Alu -12 300 1 346 192 25 92 chr3 82746385 82746505 -144778073 + MER3 DNA MER1_type 98 209 0 1936 153 36 0 chr3 82746883 82747004 -144777574 + AluJb SINE Alu 1 116 -196 183 80 0 0 chr3 82747004 82747029 -144777549 + (CA)n Simple_repeat Simple_repeat 2 26 0 1936 153 36 0 chr3 82747029 82747208 -144777370 + AluJb SINE Alu 116 312 0 369 222 71 50 chr3 82748333 82748432 -144776146 - MIR SINE MIR -70 192 92 243 0 0 0 chr3 82749089 82749116 -144775462 + (A)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr3 82750491 82750512 -144774066 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 82750592 82750614 -144773964 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr3 82751038 82751058 -144773520 + (TTTCC)n Simple_repeat Simple_repeat 3 22 0 331 316 133 62 chr3 82752256 82752512 -144772066 + L2 LINE L2 2995 3268 -4 183 246 88 53 chr3 82755671 82755728 -144768850 + L2 LINE L2 3170 3228 -44 182 37 37 0 chr3 82756854 82756881 -144767697 + (GA)n Simple_repeat Simple_repeat 1 28 0 23 0 0 0 chr3 82757473 82757496 -144767082 + AT_rich Low_complexity Low_complexity 1 23 0 394 338 113 24 chr3 82758729 82758942 -144765636 + MIR SINE MIR 16 247 -15 22 0 0 0 chr3 82758947 82758969 -144765609 + AT_rich Low_complexity Low_complexity 1 22 0 220 409 43 0 chr3 82759651 82759766 -144764812 - MIR SINE MIR -67 141 22 307 225 36 66 chr3 82761311 82761437 -144763141 + MIR SINE MIR 3 136 -72 2064 120 3 10 chr3 82761621 82761922 -144762656 + AluSx SINE Alu 14 312 0 205 271 35 47 chr3 82761980 82762065 -144762513 + MIR SINE MIR 163 246 -16 572 195 0 34 chr3 82762154 82762272 -144762306 - MER81 DNA DNA 0 114 1 1944 122 14 7 chr3 82763894 82764182 -144760396 - AluSp SINE Alu -23 290 1 257 310 78 21 chr3 82765611 82765753 -144758825 + L2 LINE L2 3164 3313 0 282 167 0 0 chr3 82765753 82765813 -144758765 + (TGGA)n Simple_repeat Simple_repeat 2 61 0 1129 208 107 31 chr3 82766034 82766351 -144758227 - MER58B DNA MER1_type 0 341 1 2234 89 0 0 chr3 82766980 82767262 -144757316 - AluSg SINE Alu -8 302 21 180 0 0 0 chr3 82768196 82768216 -144756362 + (TA)n Simple_repeat Simple_repeat 1 20 0 477 0 0 0 chr3 82768689 82768742 -144755836 + (TAAAA)n Simple_repeat Simple_repeat 2 54 0 274 294 35 24 chr3 82770631 82770716 -144753862 - MIR3 SINE MIR -51 157 72 21 36 0 0 chr3 82771759 82771787 -144752791 + AT_rich Low_complexity Low_complexity 1 28 0 228 35 0 0 chr3 82773209 82773238 -144751340 + (A)n Simple_repeat Simple_repeat 1 29 0 908 186 10 30 chr3 82773753 82773952 -144750626 - AluSq SINE Alu -114 199 5 713 259 164 88 chr3 82774354 82775254 -144749324 + L1MEc LINE L1 2161 3086 -3129 1038 215 31 11 chr3 82775382 82775643 -144748935 + L1MEc LINE L1 459 724 -5672 2170 83 14 3 chr3 82777712 82778001 -144746577 - AluSx SINE Alu -20 292 1 372 306 0 0 chr3 82778358 82778456 -144746122 + MIR SINE MIR 163 260 -2 206 412 0 0 chr3 82779436 82779487 -144745091 + C-rich Low_complexity Low_complexity 1 51 0 193 247 13 13 chr3 82779490 82779567 -144745011 + CT-rich Low_complexity Low_complexity 1 77 0 428 198 81 9 chr3 82780883 82780994 -144743584 + Tigger4(Zombi) DNA MER2_type 2612 2730 -1 217 241 84 48 chr3 82781914 82781997 -144742581 + MIR SINE MIR 90 175 -87 261 0 0 0 chr3 82782534 82782563 -144742015 + (A)n Simple_repeat Simple_repeat 1 29 0 31 0 0 0 chr3 82783473 82783504 -144741074 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 82786373 82786395 -144738183 + GC_rich Low_complexity Low_complexity 1 22 0 645 196 0 68 chr3 82786555 82786718 -144737860 + MER58B DNA MER1_type 189 340 -1 1475 214 0 25 chr3 82786984 82787269 -144737309 - AluJo SINE Alu -24 288 11 995 243 14 14 chr3 82787491 82787713 -144736865 + MIR SINE MIR 4 225 -37 786 265 157 61 chr3 82788386 82788895 -144735683 + MLT1K LTR MaLR 15 572 -16 7801 41 11 5 chr3 82790620 82792374 -144732204 + L1PA5 LINE L1 4388 6152 -2 216 0 0 0 chr3 82792388 82792412 -144732166 + (CAA)n Simple_repeat Simple_repeat 1 24 0 360 64 0 0 chr3 82793880 82793927 -144730651 + (CA)n Simple_repeat Simple_repeat 2 48 0 220 234 0 0 chr3 82794226 82794273 -144730305 + A-rich Low_complexity Low_complexity 1 47 0 481 297 48 75 chr3 82794784 82795158 -144729420 - L1ME4a LINE L1 -225 5896 5533 1931 112 3 25 chr3 82796774 82797060 -144727518 + AluSq SINE Alu 4 283 -30 284 0 28 0 chr3 82797065 82797101 -144727477 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr3 82797377 82797399 -144727179 + AT_rich Low_complexity Low_complexity 1 22 0 3445 201 45 11 chr3 82798263 82799447 -144725131 - L1MB7 LINE L1 -13 6171 4879 212 359 68 0 chr3 82799882 82799985 -144724593 + MIR SINE MIR 39 148 -60 270 0 0 0 chr3 82802397 82802427 -144722151 + (A)n Simple_repeat Simple_repeat 1 30 0 668 243 30 20 chr3 82803159 82803361 -144721217 - MER3 DNA MER1_type -5 204 1 516 206 233 0 chr3 82803413 82803559 -144721019 - MER5A DNA MER1_type -6 183 4 2331 41 41 10 chr3 82804501 82804791 -144719787 - AluY SINE Alu -12 299 1 2011 144 0 7 chr3 82804885 82805190 -144719388 - AluSx SINE Alu -9 303 1 535 230 36 133 chr3 82805334 82805439 -144719139 - MER45A DNA AcHobo -1404 177 98 766 183 0 8 chr3 82805439 82805565 -144719013 + FLAM_A SINE Alu 1 125 -8 535 230 36 133 chr3 82805565 82805655 -144718923 - MER45A DNA AcHobo -1483 98 1 411 268 35 45 chr3 82805931 82806129 -144718449 - L1ME LINE L1 -394 5727 5532 514 78 6 0 chr3 82806619 82806710 -144717868 + L1MA4 LINE L1 6198 6290 -10 306 67 0 0 chr3 82811343 82811388 -144713190 + (T)n Simple_repeat Simple_repeat 1 45 0 22 0 0 0 chr3 82813036 82813058 -144711520 + AT_rich Low_complexity Low_complexity 1 22 0 352 218 328 11 chr3 82813280 82813454 -144711124 - MER106A DNA MER1_type -7 229 1 1855 144 20 17 chr3 82814518 82814810 -144709768 - AluSx SINE Alu -19 293 1 584 249 146 24 chr3 82815408 82815613 -144708965 + MIR SINE MIR 23 252 -10 1904 148 3 29 chr3 82815990 82816301 -144708277 - AluJo SINE Alu -9 303 1 2344 88 3 0 chr3 82818118 82818414 -144706164 - AluSp SINE Alu -16 297 1 320 337 134 40 chr3 82819390 82819770 -144704808 - L3 LINE CR1 -448 1129 714 257 188 14 58 chr3 82820037 82820106 -144704472 + L2 LINE L2 3207 3272 0 421 309 52 7 chr3 82820111 82820247 -144704331 - MIR SINE MIR -68 194 53 542 290 19 34 chr3 82821629 82821836 -144702742 - MIR3 SINE MIR -4 204 1 686 216 30 0 chr3 82822103 82822270 -144702308 - MER3 DNA MER1_type 0 209 38 2340 108 7 0 chr3 82822281 82822588 -144701990 + AluSx SINE Alu 2 310 -2 1937 55 4 8 chr3 82822668 82822922 -144701656 + L1PA7 LINE L1 5902 6154 0 186 354 0 0 chr3 82822992 82823057 -144701521 - MIR3 SINE MIR -31 177 113 1003 296 31 52 chr3 82823266 82823353 -144701225 + MLT1K LTR MaLR 83 170 -418 2128 161 80 5 chr3 82823353 82823751 -144700827 + MSTA LTR MaLR 1 428 0 1003 296 31 52 chr3 82823751 82824180 -144700398 + MLT1K LTR MaLR 170 588 0 1239 167 0 5 chr3 82825034 82825238 -144699340 + AluJo SINE Alu 1 203 -109 1542 195 10 36 chr3 82825426 82825734 -144698844 - AluJo SINE Alu -12 300 1 1232 219 0 16 chr3 82826028 82826334 -144698244 - AluSc SINE Alu 0 309 9 22 56 0 0 chr3 82826698 82826734 -144697844 + AT_rich Low_complexity Low_complexity 1 36 0 360 64 0 0 chr3 82827600 82827647 -144696931 + (CA)n Simple_repeat Simple_repeat 2 48 0 220 234 0 0 chr3 82827946 82827993 -144696585 + A-rich Low_complexity Low_complexity 1 47 0 481 297 48 75 chr3 82828504 82828878 -144695700 - L1ME4a LINE L1 -225 5896 5533 1931 112 3 25 chr3 82830494 82830780 -144693798 + AluSq SINE Alu 4 283 -30 284 0 28 0 chr3 82830785 82830821 -144693757 + (CAAAA)n Simple_repeat Simple_repeat 1 37 0 22 0 0 0 chr3 82831097 82831119 -144693459 + AT_rich Low_complexity Low_complexity 1 22 0 3616 201 44 6 chr3 82831983 82833162 -144691416 - L1MB7 LINE L1 -13 6171 4879 212 359 68 0 chr3 82833597 82833700 -144690878 + MIR SINE MIR 39 148 -60 189 258 103 52 chr3 82836250 82836347 -144688231 - MER5A DNA MER1_type -84 105 4 229 176 176 50 chr3 82838711 82838830 -144685748 + Charlie7 DNA MER1_type 2479 2612 0 254 214 150 43 chr3 82839281 82839421 -144685157 - MER5A DNA MER1_type 0 189 35 * 674 197 8 8 chr3 82839305 82839437 -144685141 + MER5A DNA MER1_type 51 182 -7 3460 139 8 8 chr3 82839521 82840047 -144684531 - MER1A DNA MER1_type -1 526 1 331 290 28 28 chr3 82840166 82840273 -144684305 - L2 LINE L2 -23 3290 3184 2202 130 0 0 chr3 82840332 82840632 -144683946 - AluSx SINE Alu -12 300 1 296 340 71 7 chr3 82840714 82840855 -144683723 + L2 LINE L2 3123 3272 0 522 238 69 31 chr3 82840871 82841031 -144683547 - MIR SINE MIR 0 262 97 430 294 191 18 chr3 82841240 82841580 -144682998 + L2 LINE L2 2911 3309 -4 233 29 29 0 chr3 82842667 82842701 -144681877 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 207 0 0 0 chr3 82844545 82844568 -144680010 + (A)n Simple_repeat Simple_repeat 1 23 0 388 258 87 15 chr3 82845319 82845470 -144679108 + MIR SINE MIR 33 192 -60 187 28 56 28 chr3 82845477 82845513 -144679065 + (TAAAAA)n Simple_repeat Simple_repeat 2 38 0 211 254 0 34 chr3 82845539 82845598 -144678980 + MIR SINE MIR 200 256 -6 425 226 212 7 chr3 82845987 82846124 -144678454 - MER5A DNA MER1_type 0 189 25 246 315 11 34 chr3 82846161 82846250 -144678328 + MER5A DNA MER1_type 63 149 -40 1293 196 23 0 chr3 82846300 82846519 -144678059 - MER58A DNA MER1_type 0 224 1 602 276 23 37 chr3 82847937 82848154 -144676424 + MIR SINE MIR 48 261 -1 1747 148 26 46 chr3 82849603 82849907 -144674671 - AluJo SINE Alu -14 298 1 465 97 0 0 chr3 82851022 82851094 -144673484 + (TG)n Simple_repeat Simple_repeat 2 73 0 199 51 0 51 chr3 82853440 82853479 -144671099 + (CAA)n Simple_repeat Simple_repeat 3 39 0 296 300 0 0 chr3 82856996 82857076 -144667502 + CT-rich Low_complexity Low_complexity 2 81 0 22 0 0 0 chr3 82859485 82859507 -144665071 + AT_rich Low_complexity Low_complexity 1 22 0 215 217 0 0 chr3 82865686 82865732 -144658846 + A-rich Low_complexity Low_complexity 2 47 0 744 227 10 6 chr3 82866968 82867137 -144657441 + L1ME2 LINE L1 6002 6176 -2 306 0 0 0 chr3 82868231 82868265 -144656313 + (T)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr3 82869820 82869842 -144654736 + AT_rich Low_complexity Low_complexity 1 22 0 29 70 0 0 chr3 82875785 82875842 -144648736 + GC_rich Low_complexity Low_complexity 1 57 0 23 33 0 0 chr3 82875900 82875930 -144648648 + GC_rich Low_complexity Low_complexity 1 30 0 243 0 0 0 chr3 82875963 82875990 -144648588 + (CCGCG)n Simple_repeat Simple_repeat 1 27 0 41 21 0 0 chr3 82876004 82876052 -144648526 + GC_rich Low_complexity Low_complexity 1 48 0 22 35 0 0 chr3 82876193 82876222 -144648356 + GC_rich Low_complexity Low_complexity 1 29 0 326 172 0 17 chr3 82878484 82878542 -144646036 - MIR SINE MIR -61 147 91 1595 171 60 17 chr3 82878552 82878669 -144645909 + AluJo SINE Alu 1 111 -201 423 0 0 0 chr3 82878669 82878716 -144645862 + (CA)n Simple_repeat Simple_repeat 2 48 0 1595 171 60 17 chr3 82878716 82878896 -144645682 + AluJo SINE Alu 111 311 -1 337 281 33 16 chr3 82882401 82882522 -144642056 + MIR3 SINE MIR 46 168 -40 2231 99 3 7 chr3 82882525 82882827 -144641751 - AluSq SINE Alu -12 301 1 258 32 0 0 chr3 82882837 82882868 -144641710 + (CAA)n Simple_repeat Simple_repeat 2 32 0 1458 178 24 42 chr3 82882991 82883278 -144641300 + AluJb SINE Alu 1 282 -30 22 0 0 0 chr3 82883936 82883958 -144640620 + AT_rich Low_complexity Low_complexity 1 22 0 257 291 118 18 chr3 82884482 82884592 -144639986 + MIR SINE MIR 49 169 -93 331 225 38 0 chr3 82885097 82885177 -144639401 - MIR SINE MIR -75 187 105 1980 136 3 3 chr3 82885194 82885480 -144639098 - AluSx SINE Alu -26 286 1 573 249 146 24 chr3 82886078 82886283 -144638295 + MIR SINE MIR 23 252 -10 1887 148 3 29 chr3 82886660 82886971 -144637607 - AluJo SINE Alu -9 303 1 2353 85 3 0 chr3 82888788 82889083 -144635495 - AluSp SINE Alu -17 296 1 306 322 143 48 chr3 82890059 82890438 -144634140 - L3 LINE CR1 -448 1129 715 260 188 14 58 chr3 82890705 82890774 -144633804 + L2 LINE L2 3207 3272 0 407 309 52 7 chr3 82890779 82890915 -144633663 - MIR SINE MIR -68 194 53 473 246 23 35 chr3 82892297 82892468 -144632110 - MIR3 SINE MIR -4 204 36 746 216 30 0 chr3 82892771 82892938 -144631640 - MER3 DNA MER1_type 0 209 38 2456 101 0 0 chr3 82892949 82893257 -144631321 + AluSx SINE Alu 2 309 -3 1972 55 4 8 chr3 82893337 82893591 -144630987 + L1PA7 LINE L1 5902 6154 0 1159 298 31 52 chr3 82893935 82894022 -144630556 + MLT1K LTR MaLR 83 170 -418 2184 166 80 5 chr3 82894022 82894420 -144630158 + MSTA LTR MaLR 1 428 0 1159 298 31 52 chr3 82894420 82894849 -144629729 + MLT1K LTR MaLR 170 588 0 1249 167 0 5 chr3 82895703 82895907 -144628671 + AluJo SINE Alu 1 203 -109 1529 195 10 36 chr3 82896095 82896403 -144628175 - AluJo SINE Alu -12 300 1 2440 86 0 0 chr3 82896698 82897001 -144627577 - AluSc SINE Alu 0 309 7 454 330 49 11 chr3 82899127 82899394 -144625184 + L2 LINE L2 2911 3187 -126 1827 207 160 11 chr3 82900066 82900511 -144624067 + MLT1F LTR MaLR 2 512 -30 489 193 86 146 chr3 82900896 82901129 -144623449 - Charlie8 DNA MER1_type -2197 220 2 510 17 0 0 chr3 82902076 82902135 -144622443 + (TG)n Simple_repeat Simple_repeat 2 60 0 2125 93 11 11 chr3 82902212 82902539 -144622039 + AluSx SINE Alu 3 329 0 21 71 0 0 chr3 82902739 82902781 -144621797 + AT_rich Low_complexity Low_complexity 1 42 0 2494 87 0 6 chr3 82902908 82903219 -144621359 + AluSx SINE Alu 1 309 -3 1205 95 6 34 chr3 82903220 82903399 -144621179 + AluSg/x SINE Alu 128 301 -9 2255 86 26 10 chr3 82903984 82904288 -144620290 + AluSx SINE Alu 4 312 0 549 191 0 0 chr3 82904317 82904363 -144620215 + MER3 DNA MER1_type 2 47 -162 514 235 0 8 chr3 82904363 82904482 -144620096 - MER3 DNA MER1_type 0 209 92 1310 194 63 44 chr3 82905078 82905270 -144619308 - MER58B DNA MER1_type -2079 341 139 1557 50 0 0 chr3 82905270 82905450 -144619128 - AluY SINE Alu 0 311 132 1310 194 63 44 chr3 82905450 82905572 -144619006 - MER58B DNA MER1_type -2281 139 21 295 276 33 21 chr3 82907269 82907401 -144617177 - MER5A DNA MER1_type -2 187 43 323 277 40 10 chr3 82907740 82907841 -144616737 + MER91B DNA MER1_type 87 190 0 430 290 43 49 chr3 82907970 82908132 -144616446 - MER91A DNA MER1_type -22 174 14 1679 176 63 3 chr3 82908151 82908469 -144616109 + MER58B DNA MER1_type 5 341 0 188 167 21 0 chr3 82909633 82909681 -144614897 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 393 250 75 0 chr3 82909952 82910072 -144614506 - MIR SINE MIR -14 248 120 2128 101 0 4 chr3 82910238 82910551 -144614027 + AluSx SINE Alu 8 319 0 669 255 44 10 chr3 82910571 82910775 -144613803 - MIR SINE MIR -50 212 2 400 146 82 45 chr3 82911126 82911236 -144613342 - MER117 DNA MER1_type -33 164 51 939 191 23 0 chr3 82913808 82913981 -144610597 + MIR SINE MIR 2 178 -84 261 75 0 0 chr3 82914186 82914226 -144610352 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 261 135 0 0 chr3 82916754 82916806 -144607772 + (CA)n Simple_repeat Simple_repeat 1 52 0 242 231 66 11 chr3 82917049 82917140 -144607438 + MIR SINE MIR 47 142 -120 2168 88 42 0 chr3 82917343 82917627 -144606951 - AluSg SINE Alu -14 296 1 679 177 16 24 chr3 82917629 82917753 -144606825 - FLAM_A SINE Alu -12 130 8 1787 160 24 7 chr3 82917777 82918070 -144606508 - AluJb SINE Alu -12 300 3 2208 114 3 0 chr3 82919488 82919777 -144604801 + AluSx SINE Alu 2 291 -21 2299 99 0 3 chr3 82922399 82922701 -144601877 - AluSq SINE Alu -12 301 1 805 219 47 6 chr3 82922946 82923115 -144601463 - MER20 DNA MER1_type -14 205 30 1860 135 56 17 chr3 82924451 82924787 -144599791 + AluSg SINE Alu 1 310 0 180 0 0 0 chr3 82926302 82926322 -144598256 + (TTA)n Simple_repeat Simple_repeat 3 22 0 315 0 0 0 chr3 82926322 82926357 -144598221 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2398 75 0 0 chr3 82926359 82926640 -144597938 - AluSx SINE Alu -30 282 2 23 33 0 0 chr3 82926919 82926949 -144597629 + AT_rich Low_complexity Low_complexity 1 30 0 339 307 124 31 chr3 82927332 82927557 -144597021 - L2 LINE L2 -433 2881 2636 381 233 297 12 chr3 82928709 82929052 -144595526 + LTR33 LTR ERVL 15 455 -66 380 214 29 79 chr3 82930310 82930395 -144594183 - MLT1H LTR MaLR -416 133 56 2083 130 3 3 chr3 82930395 82930696 -144593882 + AluSx SINE Alu 1 301 -11 380 214 29 79 chr3 82930696 82930750 -144593828 - MLT1H LTR MaLR -493 56 1 1529 251 26 2 chr3 82931017 82931439 -144593139 + L1MB3 LINE L1 5739 6170 -13 283 234 0 72 chr3 82933331 82933430 -144591148 + MIR SINE MIR 63 153 -69 766 109 9 0 chr3 82933892 82934002 -144590576 - FRAM SINE Alu -12 164 54 295 276 33 21 chr3 82935673 82935805 -144588773 - MER5A DNA MER1_type -2 187 43 323 277 40 10 chr3 82936141 82936242 -144588336 + MER91B DNA MER1_type 87 190 0 430 290 43 49 chr3 82936371 82936533 -144588045 - MER91A DNA MER1_type -22 174 14 1679 176 63 3 chr3 82936552 82936870 -144587708 + MER58B DNA MER1_type 5 341 0 188 167 21 0 chr3 82938034 82938082 -144586496 + (TTCA)n Simple_repeat Simple_repeat 4 52 0 393 250 75 0 chr3 82938353 82938473 -144586105 - MIR SINE MIR -14 248 120 2128 101 0 4 chr3 82938639 82938952 -144585626 + AluSx SINE Alu 8 319 0 669 255 44 10 chr3 82938972 82939176 -144585402 - MIR SINE MIR -50 212 2 400 146 82 45 chr3 82939527 82939637 -144584941 - MER117 DNA MER1_type -33 164 51 1000 191 23 0 chr3 82942207 82942380 -144582198 + MIR SINE MIR 2 178 -84 261 75 0 0 chr3 82942585 82942625 -144581953 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 261 135 0 0 chr3 82945153 82945205 -144579373 + (CA)n Simple_repeat Simple_repeat 1 52 0 270 276 82 31 chr3 82945442 82945540 -144579038 + MIR SINE MIR 42 144 -64 2139 88 42 0 chr3 82945742 82946026 -144578552 - AluSg SINE Alu -14 296 1 730 177 16 24 chr3 82946028 82946152 -144578426 - FLAM_A SINE Alu -12 130 8 1771 160 24 7 chr3 82946176 82946469 -144578109 - AluJb SINE Alu -12 300 3 2192 114 3 0 chr3 82947887 82948176 -144576402 + AluSx SINE Alu 2 291 -21 2275 99 0 3 chr3 82950799 82951101 -144573477 - AluSq SINE Alu -12 301 1 799 219 47 6 chr3 82951346 82951515 -144573063 - MER20 DNA MER1_type -14 205 30 1844 135 56 17 chr3 82952851 82953187 -144571391 + AluSg SINE Alu 1 310 0 180 0 0 0 chr3 82954700 82954720 -144569858 + (TTA)n Simple_repeat Simple_repeat 3 22 0 315 0 0 0 chr3 82954720 82954755 -144569823 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2329 85 0 0 chr3 82954757 82955039 -144569539 - AluSx SINE Alu -30 282 1 2080 133 7 0 chr3 82955137 82955438 -144569140 - AluSx SINE Alu -9 303 1 1904 179 3 0 chr3 82956492 82956789 -144567789 - AluJb SINE Alu -14 298 1 250 254 42 0 chr3 82956950 82957021 -144567557 + GA-rich Low_complexity Low_complexity 1 74 0 1480 228 17 40 chr3 82958033 82958380 -144566198 + MER58B DNA MER1_type 1 339 -2 22 0 0 0 chr3 82959295 82959317 -144565261 + AT_rich Low_complexity Low_complexity 1 22 0 198 103 0 0 chr3 82960431 82960460 -144564118 + (T)n Simple_repeat Simple_repeat 1 29 0 356 257 30 72 chr3 82961989 82962195 -144562383 - MIR SINE MIR -10 252 60 933 133 51 6 chr3 82963374 82963532 -144561046 + L1PA16 LINE L1 5992 6156 -10 23 0 0 0 chr3 82963533 82963556 -144561022 + AT_rich Low_complexity Low_complexity 1 23 0 209 347 13 0 chr3 82964095 82964170 -144560408 + MIR SINE MIR 175 250 -12 186 216 0 0 chr3 82964658 82964695 -144559883 - MIR SINE MIR -146 116 80 731 241 150 10 chr3 82965224 82965431 -144559147 + MIR SINE MIR 2 237 -25 2246 97 0 31 chr3 82965605 82965926 -144558652 + AluY SINE Alu 1 311 0 1873 151 0 37 chr3 82965944 82966326 -144558252 + AluJb SINE Alu 1 370 0 207 161 0 0 chr3 82968745 82968776 -144555802 + (CA)n Simple_repeat Simple_repeat 2 32 0 203 189 0 0 chr3 82970802 82970839 -144553739 + A-rich Low_complexity Low_complexity 1 37 0 186 133 0 0 chr3 82973859 82973889 -144550689 + (TAGA)n Simple_repeat Simple_repeat 2 31 0 2367 80 7 7 chr3 82974381 82974683 -144549895 + AluSc SINE Alu 1 302 -7 180 0 0 0 chr3 82977179 82977199 -144547379 + (TTTA)n Simple_repeat Simple_repeat 3 22 0 22 35 0 0 chr3 82977839 82977868 -144546710 + AT_rich Low_complexity Low_complexity 1 29 0 219 203 109 31 chr3 82978512 82978576 -144546002 - MIR SINE MIR -87 175 107 2113 168 29 3 chr3 82979513 82979864 -144544714 - MER46B DNA MER2_type -1 235 1 445 259 27 0 chr3 82980003 82980115 -144544463 - MIR SINE MIR -78 184 70 700 203 39 0 chr3 82980244 82980372 -144544206 + FLAM_A SINE Alu 1 133 0 2219 115 0 3 chr3 82980393 82980697 -144543881 + AluSc SINE Alu 1 303 -6 365 293 41 0 chr3 82980999 82981122 -144543456 - L2 LINE L2 -8 3264 3137 2169 212 103 36 chr3 82981665 82982250 -144542328 + MLT1E3 LTR MaLR 1 624 0 270 0 0 0 chr3 82982369 82982399 -144542179 + (CAGGG)n Simple_repeat Simple_repeat 2 31 0 300 152 0 42 chr3 82982429 82982505 -144542073 + MIR SINE MIR 85 141 -67 607 247 95 0 chr3 82982857 82983015 -144541563 + MIR SINE MIR 34 206 -56 894 142 0 0 chr3 82983018 82983145 -144541433 + FLAM_C SINE Alu 1 127 -16 2700 234 82 41 chr3 82984138 82984661 -144539917 - L1ME1 LINE L1 -62 6104 5555 2103 103 3 21 chr3 82984661 82984981 -144539597 + AluSx SINE Alu 1 315 0 2700 234 82 41 chr3 82984981 82985355 -144539223 - L1ME1 LINE L1 -611 5555 5198 28 0 0 0 chr3 82985910 82985938 -144538640 + AT_rich Low_complexity Low_complexity 1 28 0 409 285 121 75 chr3 82986583 82986864 -144537714 + L2 LINE L2 2636 2929 -385 306 336 67 28 chr3 82987211 82987494 -144537084 + L1M4 LINE L1 5052 5345 -801 2334 86 0 13 chr3 82987500 82987802 -144536776 + AluSx SINE Alu 1 298 -14 250 232 146 0 chr3 82988061 82988143 -144536435 + MIR SINE MIR 117 210 -52 212 362 64 21 chr3 82988332 82988426 -144536152 - L2 LINE L2 -190 3082 2985 296 326 22 0 chr3 82988481 82988573 -144536005 - L2 LINE L2 -41 3231 3138 357 205 26 100 chr3 82988744 82988924 -144535654 + MER104 DNA Tc2 3 182 0 21 0 0 0 chr3 82988961 82988982 -144535596 + AT_rich Low_complexity Low_complexity 1 21 0 397 278 64 46 chr3 82990444 82990617 -144533961 + MIR SINE MIR 12 187 -75 2430 219 105 3 chr3 82991296 82991875 -144532703 + MLT1E1 LTR MaLR 17 654 0 635 311 23 18 chr3 82992002 82992319 -144532259 + MIR SINE MIR 2 188 -20 198 0 0 0 chr3 82993481 82993503 -144531075 + (TTC)n Simple_repeat Simple_repeat 3 24 0 1219 144 74 51 chr3 82993503 82993760 -144530818 - L1MA7 LINE L1 0 6291 6029 668 262 119 0 chr3 82993991 82994193 -144530385 + MIR SINE MIR 1 226 -36 847 196 230 33 chr3 82994701 82994971 -144529607 - MER33 DNA MER1_type -1 323 1 238 232 0 98 chr3 82997126 82997208 -144527370 - L2 LINE L2 -55 3258 3185 1754 164 0 4 chr3 82997210 82997485 -144527093 + AluSx SINE Alu 1 274 -38 695 119 0 0 chr3 82997491 82997600 -144526978 + (GGGA)n Simple_repeat Simple_repeat 4 112 0 271 77 77 0 chr3 82997600 82997652 -144526926 + GA-rich Low_complexity Low_complexity 3 58 0 1859 155 7 3 chr3 82998229 82998533 -144526045 + AluJo SINE Alu 1 305 -7 1118 276 72 39 chr3 82998643 82999075 -144525503 + L3b LINE CR1 1114 1559 -24 946 146 36 26 chr3 82999963 83000155 -144524423 - MER3 DNA MER1_type -9 200 7 920 247 79 52 chr3 83000572 83001046 -144523532 - MLT1H LTR MaLR -4 545 4 383 237 110 25 chr3 83001916 83002034 -144522544 - L2 LINE L2 -7 3306 3179 252 186 102 0 chr3 83002036 83002095 -144522483 + LTR28 LTR ERV1 1 65 -955 2484 74 0 0 chr3 83003593 83003904 -144520674 - AluY SINE Alu 0 311 1 23 33 0 0 chr3 83004642 83004672 -144519906 + AT_rich Low_complexity Low_complexity 1 30 0 225 283 88 35 chr3 83005548 83005661 -144518917 - L2 LINE L2 -18 3254 3136 5919 118 5 5 chr3 83006204 83007100 -144517478 - L1P LINE L1 -1121 5025 4130 1558 104 16 12 chr3 83007098 83007349 -144517229 + L1P3 LINE L1 5352 5603 -551 * 373 181 5 75 chr3 83007465 83007653 -144516925 + C-rich Low_complexity Low_complexity 6 180 0 207 176 44 71 chr3 83007580 83007762 -144516816 + (CACAC)n Simple_repeat Simple_repeat 4 180 0 * 232 271 0 35 chr3 83007728 83007872 -144516706 + (CACCC)n Simple_repeat Simple_repeat 5 143 0 879 287 89 17 chr3 83008048 83008529 -144516049 + L1M4 LINE L1 2206 2721 -3425 230 306 14 14 chr3 83008772 83008954 -144515624 + T-rich Low_complexity Low_complexity 1 182 0 191 59 0 29 chr3 83009540 83009574 -144515004 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 201 94 0 0 chr3 83013806 83013838 -144510740 + (TCCA)n Simple_repeat Simple_repeat 4 35 0 31 0 0 0 chr3 83013854 83013885 -144510693 + AT_rich Low_complexity Low_complexity 1 31 0 458 245 123 57 chr3 83015207 83015419 -144509159 - MIR SINE MIR -7 255 30 197 299 30 30 chr3 83015730 83015797 -144508781 - MIR SINE MIR -86 122 56 369 0 0 0 chr3 83016139 83016180 -144508398 + (CA)n Simple_repeat Simple_repeat 1 41 0 520 203 208 52 chr3 83016785 83016977 -144507601 + MER58A DNA MER1_type 2 223 -1 794 202 101 0 chr3 83017036 83017204 -144507374 + AluJo SINE Alu 124 308 -4 210 226 194 21 chr3 83017401 83017494 -144507084 + MIR3 SINE MIR 94 202 -6 468 51 0 0 chr3 83017534 83017593 -144506985 + (CA)n Simple_repeat Simple_repeat 1 59 0 2269 78 10 3 chr3 83017681 83017977 -144506601 - AluSq SINE Alu -15 298 1 1066 160 0 17 chr3 83019360 83019535 -144505043 + FRAM SINE Alu 1 172 -4 2080 124 3 10 chr3 83019543 83019857 -144504721 + AluSx SINE Alu 1 312 0 388 302 85 26 chr3 83020305 83020494 -144504084 + MIR SINE MIR 15 214 -48 221 234 0 0 chr3 83020530 83020577 -144504001 + (CTA)n Simple_repeat Simple_repeat 2 48 0 1972 144 23 3 chr3 83020596 83020902 -144503676 - AluJo SINE Alu 0 312 1 2214 102 3 7 chr3 83020906 83021201 -144503377 - AluSc SINE Alu -15 294 1 1318 148 5 45 chr3 83021231 83021369 -144503209 + AluSx SINE Alu 1 129 -183 2268 74 0 3 chr3 83021369 83021686 -144502892 + AluY SINE Alu 1 316 0 1318 148 5 45 chr3 83021686 83021769 -144502809 + AluSx SINE Alu 129 214 -98 22 0 0 0 chr3 83021778 83021800 -144502778 + AT_rich Low_complexity Low_complexity 1 22 0 1859 100 108 7 chr3 83021904 83022173 -144502405 - AluSx SINE Alu -10 302 7 281 279 48 48 chr3 83022495 83022642 -144501936 + L1ME4a LINE L1 5957 6103 -18 366 251 11 37 chr3 83024146 83024281 -144500297 - MIR SINE MIR -62 146 62 2453 73 3 10 chr3 83024521 83024834 -144499744 + AluY SINE Alu 1 311 0 1392 151 91 67 chr3 83024970 83025268 -144499310 - AluJb SINE Alu -7 305 1 429 281 67 22 chr3 83025361 83025585 -144498993 - L1ME4a LINE L1 -250 5871 5638 205 194 0 0 chr3 83025585 83025621 -144498957 + (ATG)n Simple_repeat Simple_repeat 3 38 0 2175 106 0 16 chr3 83025635 83025946 -144498632 + AluSx SINE Alu 1 306 -6 509 254 92 0 chr3 83026023 83026165 -144498413 - MIR SINE MIR -101 161 7 624 239 45 62 chr3 83026165 83026295 -144498283 + MER5A DNA MER1_type 17 145 -44 2274 96 10 0 chr3 83026295 83026598 -144497980 + AluSp SINE Alu 2 307 -6 624 239 45 62 chr3 83026598 83026643 -144497935 + MER5A DNA MER1_type 145 189 0 336 262 16 48 chr3 83026664 83026790 -144497788 - L1ME4a LINE L1 -485 5636 5515 2198 116 0 0 chr3 83027334 83027627 -144496951 + AluSx SINE Alu 1 293 -19 2307 75 0 0 chr3 83028854 83029156 -144495422 + AluSc SINE Alu 1 302 0 805 225 91 19 chr3 83029295 83029504 -144495074 - MER58A DNA MER1_type 0 224 1 2151 116 10 0 chr3 83029724 83030018 -144494560 + AluSq SINE Alu 1 297 -16 22 0 0 0 chr3 83030439 83030461 -144494117 + AT_rich Low_complexity Low_complexity 1 22 0 2190 87 17 10 chr3 83030824 83031123 -144493455 - AluSq SINE Alu -2 311 11 230 321 29 71 chr3 83032188 83032328 -144492250 - L2 LINE L2 -2 3270 3137 1295 159 32 112 chr3 83032749 83033088 -144491490 + AluJb SINE Alu 1 312 0 188 224 20 20 chr3 83034427 83034476 -144490102 + L2 LINE L2 3249 3297 -16 1769 170 0 17 chr3 83035070 83035370 -144489208 - AluJb SINE Alu -17 295 1 207 0 0 0 chr3 83035545 83035568 -144489010 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2433 62 0 3 chr3 83035576 83035868 -144488710 - AluY SINE Alu -20 291 1 2151 114 0 0 chr3 83035872 83036161 -144488417 - AluSx SINE Alu -15 297 9 189 107 0 0 chr3 83036682 83036710 -144487868 + (A)n Simple_repeat Simple_repeat 1 28 0 522 260 145 10 chr3 83037421 83037621 -144486957 - Charlie8 DNA MER1_type -2130 287 61 186 103 0 0 chr3 83040492 83040521 -144484057 + (CAGA)n Simple_repeat Simple_repeat 3 31 0 336 263 171 66 chr3 83041531 83041835 -144482743 + MLT1J LTR MaLR 16 351 -160 197 191 0 79 chr3 83042535 83042598 -144481980 - MIR SINE MIR -46 216 159 1088 254 18 0 chr3 83042724 83042944 -144481634 + MER58A DNA MER1_type 1 224 0 1200 167 105 19 chr3 83043572 83043830 -144480748 - AluJb SINE Alu -7 305 26 2080 124 0 10 chr3 83043830 83044121 -144480457 - AluSx SINE Alu -24 288 1 234 0 0 0 chr3 83047425 83047451 -144477127 + (TG)n Simple_repeat Simple_repeat 1 26 0 33 0 0 0 chr3 83047700 83047733 -144476845 + GC_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr3 83047956 83047981 -144476597 + AT_rich Low_complexity Low_complexity 1 25 0 2480 67 3 13 chr3 83050130 83050445 -144474133 + AluSp SINE Alu 1 312 -1 2352 73 10 3 chr3 83050657 83050960 -144473618 - AluY SINE Alu -6 305 1 688 204 0 29 chr3 83051367 83051504 -144473074 + FLAM_A SINE Alu 1 133 0 532 176 30 53 chr3 83052077 83052208 -144472370 + L1ME4a LINE L1 5739 5866 -255 5902 128 61 41 chr3 83052393 83053508 -144471070 + pTR5 LTR ERV1 57 277 -437 356 190 64 82 chr3 83053508 83053619 -144470959 + LTR30 LTR ERV1 375 642 -80 2185 82 33 0 chr3 83053619 83053923 -144470655 + pTR5 LTR ERV1 79 392 -2046 1924 131 0 14 chr3 83053923 83054198 -144470380 + AluSx SINE Alu 31 301 -11 1783 179 3 6 chr3 83054983 83055296 -144469282 + AluJb SINE Alu 1 312 0 587 275 59 25 chr3 83055730 83055966 -144468612 + MIR SINE MIR 13 256 -6 2041 124 3 0 chr3 83056063 83056345 -144468233 + AluSc SINE Alu 1 283 -26 363 96 0 0 chr3 83056894 83056946 -144467632 + (A)n Simple_repeat Simple_repeat 1 52 0 2228 111 3 3 chr3 83058473 83058771 -144465807 - AluSc SINE Alu -11 298 1 21 0 0 0 chr3 83059476 83059497 -144465081 + AT_rich Low_complexity Low_complexity 1 21 0 183 156 0 0 chr3 83059970 83060002 -144464576 + T-rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr3 83060254 83060283 -144464295 + AT_rich Low_complexity Low_complexity 1 29 0 297 243 296 10 chr3 83061366 83061572 -144463006 + L2 LINE L2 1744 2008 -1306 200 311 52 15 chr3 83062227 83062362 -144462216 + L2 LINE L2 2920 3059 -213 201 74 0 0 chr3 83062937 83062964 -144461614 + (A)n Simple_repeat Simple_repeat 1 27 0 2207 107 10 13 chr3 83063432 83063741 -144460837 - AluSc SINE Alu -1 308 1 211 226 19 0 chr3 83063776 83063829 -144460749 + MIR SINE MIR 99 152 -110 1154 172 10 0 chr3 83064054 83064257 -144460321 - MER3 DNA MER1_type 0 209 5 430 261 44 56 chr3 83064671 83064794 -144459784 + MER5B DNA MER1_type 1 123 -55 2002 103 0 0 chr3 83064794 83065047 -144459531 - AluSg SINE Alu -14 296 44 430 261 44 56 chr3 83065047 83065103 -144459475 + MER5B DNA MER1_type 123 178 0 348 294 17 17 chr3 83065688 83065807 -144458771 + MIR3 SINE MIR 41 159 -49 38 61 0 0 chr3 83065858 83065924 -144458654 + AT_rich Low_complexity Low_complexity 1 66 0 4080 58 0 0 chr3 83066092 83066614 -144457964 + L1PA5 LINE L1 5647 6168 0 503 285 60 60 chr3 83066654 83066875 -144457703 - MER102b DNA MER1_type -1088 340 117 2272 114 0 0 chr3 83066875 83067174 -144457404 - AluSx SINE Alu -13 299 1 503 285 60 60 chr3 83067174 83067250 -144457328 - MER102b DNA MER1_type -1310 118 43 318 50 0 0 chr3 83067471 83067511 -144457067 + (TTA)n Simple_repeat Simple_repeat 2 41 0 698 191 40 0 chr3 83067519 83067645 -144456933 - FAM SINE Alu -34 151 21 497 273 53 7 chr3 83068772 83068922 -144455656 - MIR SINE MIR -105 157 1 410 180 0 52 chr3 83069121 83069209 -144455369 - AluSg/x SINE Alu -101 199 132 2492 70 0 0 chr3 83069209 83069508 -144455070 - AluSg SINE Alu -11 299 1 29 47 0 0 chr3 83070067 83070110 -144454468 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr3 83070154 83070182 -144454396 + AT_rich Low_complexity Low_complexity 1 28 0 2167 116 3 7 chr3 83070652 83070962 -144453616 + AluSg SINE Alu 1 309 -1 431 291 17 46 chr3 83071058 83071233 -144453345 + MIR SINE MIR 83 252 -10 2382 60 7 3 chr3 83071771 83072070 -144452508 - AluY SINE Alu -11 300 1 773 276 43 9 chr3 83072675 83072907 -144451671 + MIR SINE MIR 1 240 -22 228 111 0 0 chr3 83073199 83073235 -144451343 + (T)n Simple_repeat Simple_repeat 1 36 0 230 333 11 0 chr3 83073942 83074035 -144450543 + L2 LINE L2 2989 3082 -231 186 267 40 53 chr3 83074138 83074213 -144450365 + L2 LINE L2 3232 3305 -8 494 333 28 0 chr3 83074508 83074688 -144449890 + MIR SINE MIR 52 236 -26 1580 126 100 11 chr3 83075157 83075427 -144449151 - AluSg SINE Alu -16 294 1 461 298 60 68 chr3 83076755 83076956 -144447622 - MIR SINE MIR -29 233 33 2290 103 3 19 chr3 83076956 83077267 -144447311 - AluSx SINE Alu -6 306 1 461 298 60 68 chr3 83077267 83077300 -144447278 - MIR SINE MIR -229 33 1 507 278 70 98 chr3 83078136 83078618 -144445960 - MLT1K LTR MaLR -49 539 71 315 309 27 20 chr3 83079545 83079694 -144444884 + MIR SINE MIR 112 261 -1 275 282 4 12 chr3 83079869 83080127 -144444451 + C-rich Low_complexity Low_complexity 1 255 0 315 309 27 20 chr3 83081255 83081404 -144443174 + MIR SINE MIR 112 261 -1 208 343 14 0 chr3 83082508 83082605 -144441973 + (CATATA)n Simple_repeat Simple_repeat 1 98 0 381 43 0 0 chr3 83082614 83082661 -144441917 + (CA)n Simple_repeat Simple_repeat 1 47 0 1915 164 27 0 chr3 83082936 83083265 -144441313 + MER44D DNA MER2_type 1 608 -1 2172 108 7 0 chr3 83083268 83083563 -144441015 - AluSp SINE Alu -16 297 1 1690 89 47 13 chr3 83084125 83084361 -144440217 - AluSc SINE Alu -23 286 43 225 0 0 0 chr3 83085270 83085295 -144439283 + (T)n Simple_repeat Simple_repeat 1 25 0 387 60 0 0 chr3 83085713 83085763 -144438815 + (TG)n Simple_repeat Simple_repeat 2 51 0 2060 127 0 3 chr3 83085770 83086053 -144438525 - AluSc SINE Alu -27 282 1 1880 123 20 14 chr3 83086314 83086606 -144437972 - AluSx SINE Alu -18 294 1 1685 130 101 11 chr3 83087331 83087608 -144436970 + AluSx SINE Alu 2 303 -9 353 317 12 37 chr3 83088077 83088241 -144436337 - MIR SINE MIR -29 233 74 651 168 56 21 chr3 83088279 83088422 -144436156 + L1MD2 LINE L1 6196 6343 -16 1938 112 13 74 chr3 83088464 83088776 -144435802 - AluSx SINE Alu -19 293 1 1169 104 0 0 chr3 83089438 83089592 -144434986 - AluSx SINE Alu -3 309 156 582 78 0 0 chr3 83089595 83089672 -144434906 - AluSx SINE Alu -231 82 6 1940 201 93 35 chr3 83089677 83090228 -144434350 - L1M4 LINE L1 -3108 3038 2456 25 31 0 0 chr3 83090415 83090447 -144434131 + AT_rich Low_complexity Low_complexity 1 32 0 1805 98 102 8 chr3 83092448 83092714 -144431864 + AluY SINE Alu 1 291 -20 477 220 159 0 chr3 83093734 83093866 -144430712 + MER3 DNA MER1_type 35 187 -22 228 291 58 10 chr3 83093937 83094040 -144430538 - L1ME2 LINE L1 -98 6066 5959 2035 217 63 107 chr3 83094102 83094679 -144429899 - L1MC5 LINE L1 -405 7556 6955 1772 65 19 0 chr3 83094679 83094895 -144429683 + L1PA8 LINE L1 5945 6164 -8 2035 217 63 107 chr3 83094895 83095125 -144429453 - L1MC5 LINE L1 -1006 6955 6793 2170 116 6 22 chr3 83095125 83095443 -144429135 - AluSq SINE Alu 0 313 1 2035 217 63 107 chr3 83095443 83095561 -144429017 - L1MC5 LINE L1 -1168 6793 6671 306 310 26 26 chr3 83095577 83095690 -144428888 - L1MC4a LINE L1 -1219 6589 6477 1750 157 0 14 chr3 83095869 83096042 -144428536 - AluJo SINE Alu -19 293 124 207 0 0 0 chr3 83096042 83096065 -144428513 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1750 157 0 14 chr3 83096065 83096177 -144428401 - AluJo SINE Alu -188 124 12 463 262 42 21 chr3 83096353 83096544 -144428034 - HAL1b LINE L1 -714 634 440 319 302 28 44 chr3 83096554 83096736 -144427842 - HAL1b LINE L1 -1011 337 159 1925 122 44 7 chr3 83096743 83097039 -144427539 - AluSx SINE Alu -5 307 1 321 291 37 37 chr3 83097777 83097911 -144426667 + MIR SINE MIR 47 180 -82 471 18 0 0 chr3 83099485 83099541 -144425037 + (TG)n Simple_repeat Simple_repeat 1 56 0 229 258 15 30 chr3 83100802 83100868 -144423710 - L2 LINE L2 0 3272 3208 310 193 59 163 chr3 83101745 83101800 -144422778 + L2 LINE L2 3193 3252 -61 1845 149 0 32 chr3 83101800 83102115 -144422463 - AluJo SINE Alu -1 311 7 310 193 59 163 chr3 83102115 83102194 -144422384 + L2 LINE L2 3252 3313 0 801 248 0 0 chr3 83103258 83103419 -144421159 + AluJo SINE Alu 121 281 -31 1865 141 7 23 chr3 83103434 83103739 -144420839 + AluSx SINE Alu 1 300 -12 25 0 0 0 chr3 83105699 83105724 -144418854 + AT_rich Low_complexity Low_complexity 1 25 0 2390 91 0 0 chr3 83106783 83107092 -144417486 - AluSg SINE Alu -1 309 1 486 157 11 11 chr3 83107132 83107221 -144417357 - MER58B DNA MER1_type 0 341 253 2202 113 0 3 chr3 83107370 83107671 -144416907 + AluSx SINE Alu 1 300 -12 2275 180 46 10 chr3 83108201 83108618 -144415960 - MSTB1 LTR MaLR 0 432 1 258 247 31 62 chr3 83109302 83109399 -144415179 - MIR SINE MIR -88 174 81 294 184 51 64 chr3 83110218 83110358 -144414220 - MLT1J1 LTR MaLR -7 439 316 186 191 0 0 chr3 83110647 83110694 -144413884 + (CATA)n Simple_repeat Simple_repeat 1 47 0 361 322 0 0 chr3 83110726 83110816 -144413762 - L2 LINE L2 -50 3222 3133 1385 181 53 22 chr3 83110993 83111015 -144413563 - L1MB8 LINE L1 0 6178 6157 334 259 68 80 chr3 83111015 83111367 -144413211 - L1MC3 LINE L1 -1634 6151 5804 996 182 0 0 chr3 83111794 83111959 -144412619 - FAM SINE Alu -12 173 9 1989 156 0 10 chr3 83112654 83112968 -144411610 + AluSx SINE Alu 1 311 -1 293 258 71 100 chr3 83113185 83113284 -144411294 - MER112 DNA MER1_type -1 259 159 2290 92 20 0 chr3 83113284 83113577 -144411001 + AluSc SINE Alu 1 299 -10 293 258 71 100 chr3 83113577 83113717 -144410861 - MER112 DNA MER1_type -101 159 27 1881 243 83 120 chr3 83113730 83113789 -144410789 - L2 LINE L2 0 3313 3253 1334 182 104 14 chr3 83113789 83114086 -144410492 + MER33 DNA MER1_type 1 324 0 1881 243 83 120 chr3 83114086 83114366 -144410212 - L2 LINE L2 -60 3253 2964 1285 187 31 0 chr3 83114366 83114591 -144409987 - MER46A DNA MER2_type 0 236 5 1881 243 83 120 chr3 83114591 83115372 -144409206 - L2 LINE L2 -349 2964 2155 1619 166 0 22 chr3 83115372 83115649 -144408929 + AluJo SINE Alu 36 306 -6 1881 243 83 120 chr3 83115649 83115772 -144408806 - L2 LINE L2 -1158 2155 2029 1017 182 0 34 chr3 83115772 83115948 -144408630 + FAM SINE Alu 1 170 -5 2113 104 0 21 chr3 83115951 83116278 -144408300 + AluSg SINE Alu 1 321 0 1881 243 83 120 chr3 83116278 83116405 -144408173 - L2 LINE L2 -1286 2027 1867 352 117 0 17 chr3 83117118 83117178 -144407400 + AluS SINE Alu 1 59 -244 201 171 0 0 chr3 83117940 83117975 -144406603 + A-rich Low_complexity Low_complexity 1 35 0 272 271 0 8 chr3 83119196 83119318 -144405260 + GA-rich Low_complexity Low_complexity 3 123 0 197 219 0 16 chr3 83121946 83122010 -144402568 + (TA)n Simple_repeat Simple_repeat 2 64 0 207 0 0 0 chr3 83122056 83122079 -144402499 + (A)n Simple_repeat Simple_repeat 1 23 0 2183 151 94 40 chr3 83122808 83123358 -144401220 - pTR5 LTR ERV1 -1116 1322 743 575 214 0 23 chr3 83123544 83123675 -144400903 - L1ME4a LINE L1 -255 5866 5739 244 284 7 50 chr3 83124316 83124571 -144400007 + A-rich Low_complexity Low_complexity 1 243 0 387 306 0 40 chr3 83124736 83124860 -144399718 - MIR SINE MIR -143 119 1 336 263 171 66 chr3 83125590 83125894 -144398684 + MLT1J LTR MaLR 16 351 -160 197 191 0 79 chr3 83126594 83126657 -144397921 - MIR SINE MIR -46 216 159 1039 264 18 0 chr3 83126783 83127003 -144397575 + MER58A DNA MER1_type 1 224 0 1193 167 105 19 chr3 83127630 83127888 -144396690 - AluJb SINE Alu -7 305 26 2083 96 0 14 chr3 83127888 83128179 -144396399 - AluY SINE Alu -24 287 1 2384 48 7 3 chr3 83128368 83128659 -144395919 - AluY SINE Alu -16 295 4 22 0 0 0 chr3 83128674 83128696 -144395882 + AT_rich Low_complexity Low_complexity 1 22 0 1933 175 42 0 chr3 83128700 83129031 -144395547 - L1PA16 LINE L1 -16 6150 5806 222 62 0 0 chr3 83129235 83129267 -144395311 + (TG)n Simple_repeat Simple_repeat 2 33 0 2371 87 0 0 chr3 83130105 83130403 -144394175 - AluSg SINE Alu -12 298 1 2129 133 3 0 chr3 83132476 83132785 -144391793 - AluY SINE Alu -1 310 1 1811 177 0 0 chr3 83132796 83133084 -144391494 - AluJb SINE Alu -24 288 1 21 71 0 0 chr3 83133477 83133519 -144391059 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr3 83133825 83133847 -144390731 + AT_rich Low_complexity Low_complexity 1 22 0 1022 233 91 26 chr3 83134010 83134319 -144390259 + MLT1J2 LTR MaLR 1 329 -121 409 80 0 0 chr3 83134389 83134439 -144390139 - AluSc SINE Alu -131 178 129 236 327 91 0 chr3 83134687 83134797 -144389781 - MIR SINE MIR -59 203 84 752 222 83 6 chr3 83135247 83135427 -144389151 - MER58A DNA MER1_type -1 223 30 2025 96 37 0 chr3 83136018 83136312 -144388266 + AluSc SINE Alu 1 304 0 387 297 17 8 chr3 83137664 83137782 -144386796 + L2 LINE L2 2722 2840 -474 361 301 29 7 chr3 83137985 83138121 -144386457 + CT-rich Low_complexity Low_complexity 2 140 0 288 216 27 27 chr3 83138502 83138613 -144385965 + T-rich Low_complexity Low_complexity 6 116 0 484 220 159 0 chr3 83139045 83139177 -144385401 + MER3 DNA MER1_type 35 187 -22 228 291 58 10 chr3 83139248 83139351 -144385227 - L1ME2 LINE L1 -98 6066 5959 2079 217 63 102 chr3 83139413 83139990 -144384588 - L1MC5 LINE L1 -405 7556 6958 1836 59 18 0 chr3 83139990 83140211 -144384367 + L1PA8 LINE L1 5945 6169 -3 2079 217 63 102 chr3 83140211 83140436 -144384142 - L1MC5 LINE L1 -1003 6958 6792 2170 116 6 22 chr3 83140436 83140754 -144383824 - AluSq SINE Alu 0 313 1 2079 217 63 102 chr3 83140754 83140872 -144383706 - L1MC5 LINE L1 -1169 6792 6671 306 310 26 26 chr3 83140888 83141001 -144383577 - L1MC4a LINE L1 -1219 6589 6477 1750 157 0 14 chr3 83141180 83141353 -144383225 - AluJo SINE Alu -19 293 124 207 0 0 0 chr3 83141353 83141376 -144383202 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1750 157 0 14 chr3 83141376 83141488 -144383090 - AluJo SINE Alu -188 124 12 463 262 42 21 chr3 83141664 83141855 -144382723 - HAL1b LINE L1 -714 634 440 319 302 28 44 chr3 83141865 83142047 -144382531 - HAL1b LINE L1 -1011 337 159 1577 123 52 8 chr3 83142054 83142306 -144382272 - AluSg SINE Alu -4 306 44 386 294 17 17 chr3 83142947 83143066 -144381512 + MIR3 SINE MIR 41 159 -49 38 61 0 0 chr3 83143117 83143183 -144381395 + AT_rich Low_complexity Low_complexity 1 66 0 4262 57 10 2 chr3 83143347 83143858 -144380720 + L1PA5 LINE L1 5640 6154 0 467 284 60 63 chr3 83143908 83144130 -144380448 - MER102b DNA MER1_type -1088 340 118 2255 114 0 0 chr3 83144130 83144429 -144380149 - AluSx SINE Alu -13 299 1 467 284 60 63 chr3 83144429 83144505 -144380073 - MER102b DNA MER1_type -1310 118 43 264 59 0 0 chr3 83144726 83144760 -144379818 + (TTA)n Simple_repeat Simple_repeat 2 35 0 762 231 34 7 chr3 83144768 83144915 -144379663 - FAM SINE Alu -34 151 1 219 69 0 0 chr3 83145497 83145526 -144379052 + (CAA)n Simple_repeat Simple_repeat 2 30 0 497 273 53 7 chr3 83146023 83146173 -144378405 - MIR SINE MIR -105 157 1 396 0 0 0 chr3 83146504 83146548 -144378030 + (TG)n Simple_repeat Simple_repeat 2 45 0 924 147 13 32 chr3 83146548 83146698 -144377880 - AluSg/x SINE Alu -32 280 134 2504 67 3 0 chr3 83146698 83146997 -144377581 - AluY SINE Alu -11 300 1 750 154 8 0 chr3 83147473 83147590 -144376988 + AluSq/x SINE Alu 16 133 -179 25 0 0 0 chr3 83147590 83147615 -144376963 + AT_rich Low_complexity Low_complexity 1 25 0 1074 92 0 0 chr3 83148001 83148132 -144376446 + AluSp SINE Alu 1 131 -182 470 201 14 50 chr3 83148361 83148528 -144376050 + AluJb SINE Alu 158 312 0 349 281 72 7 chr3 83148531 83148670 -144375908 + MIR SINE MIR 83 230 -32 459 35 0 0 chr3 83149754 83149811 -144374767 + (TG)n Simple_repeat Simple_repeat 1 57 0 2241 73 0 28 chr3 83149811 83150097 -144374481 - AluY SINE Alu -33 278 1 295 252 46 53 chr3 83150202 83150333 -144374245 + MIR3 SINE MIR 5 134 -74 401 188 11 11 chr3 83151591 83151767 -144372811 + (CA)n Simple_repeat Simple_repeat 2 177 0 216 163 0 0 chr3 83151886 83151929 -144372649 + (CA)n Simple_repeat Simple_repeat 1 43 0 248 281 64 23 chr3 83151997 83152168 -144372410 - L1MC4 LINE L1 -1 8041 7864 * 437 218 49 28 chr3 83152160 83152302 -144372276 + L1ME4a LINE L1 5860 6004 -117 311 267 19 9 chr3 83153950 83154055 -144370523 - MIR3 SINE MIR -5 203 98 1780 172 0 30 chr3 83154730 83155024 -144369554 + AluJo SINE Alu 1 287 -25 420 20 0 0 chr3 83155024 83155073 -144369505 + (CA)n Simple_repeat Simple_repeat 2 50 0 395 271 66 67 chr3 83155089 83155496 -144369082 - L2 LINE L2 -208 3064 2652 318 67 0 0 chr3 83156580 83156625 -144367953 + (TG)n Simple_repeat Simple_repeat 2 46 0 392 212 168 9 chr3 83157315 83157428 -144367150 + FLAM_A SINE Alu 1 131 -2 2173 122 3 6 chr3 83157428 83157740 -144366838 + AluSx SINE Alu 1 311 -1 334 227 13 0 chr3 83158146 83158221 -144366357 - MER113 DNA MER1_type? 0 521 446 201 195 0 0 chr3 83158221 83158262 -144366316 + (CATATA)n Simple_repeat Simple_repeat 4 44 0 2086 89 69 7 chr3 83158282 83158573 -144366005 - AluSq SINE Alu -4 309 1 315 180 62 113 chr3 83158575 83158769 -144365809 - MER113 DNA MER1_type? -305 216 33 233 137 0 78 chr3 83158889 83158940 -144365638 + MIR SINE MIR 100 146 -62 277 232 12 24 chr3 83158996 83159078 -144365500 + (CATATA)n Simple_repeat Simple_repeat 3 83 0 1304 163 34 0 chr3 83159181 83159390 -144365188 - AluJo SINE Alu -10 302 87 546 156 0 0 chr3 83160861 83160957 -144363621 - MER5A DNA MER1_type -85 104 9 264 122 0 0 chr3 83161636 83161677 -144362901 + (TA)n Simple_repeat Simple_repeat 2 42 0 212 328 0 0 chr3 83162005 83162063 -144362515 - L2 LINE L2 -9 3263 3206 293 284 0 34 chr3 83162455 83162543 -144362035 + GA-rich Low_complexity Low_complexity 4 88 0 349 287 0 20 chr3 83163706 83163807 -144360771 + (TATATG)n Simple_repeat Simple_repeat 3 101 0 2088 116 3 3 chr3 83164912 83165205 -144359373 - AluSx SINE Alu -19 293 1 2022 141 0 0 chr3 83166721 83167005 -144357573 + AluJb SINE Alu 1 284 -28 1792 178 0 7 chr3 83168119 83168422 -144356156 + AluJb SINE Alu 6 306 -6 2479 80 6 0 chr3 83168662 83168973 -144355605 - AluSp SINE Alu 0 313 1 283 289 37 37 chr3 83169709 83169844 -144354734 + MIR SINE MIR 46 180 -82 282 318 126 14 chr3 83169920 83170143 -144354435 - MIR SINE MIR 0 262 15 510 235 36 72 chr3 83170159 83170263 -144354315 + MER5B DNA MER1_type 19 117 -61 1969 82 25 11 chr3 83170263 83170571 -144354007 - AluSq SINE Alu 0 312 1 510 235 36 72 chr3 83170571 83170631 -144353947 + MER5B DNA MER1_type 117 178 0 1042 215 124 66 chr3 83170673 83170939 -144353639 - MLT1D LTR MaLR 0 505 256 183 80 0 0 chr3 83170939 83170964 -144353614 + (TA)n Simple_repeat Simple_repeat 1 25 0 1042 215 124 66 chr3 83170964 83171303 -144353275 - MLT1D LTR MaLR -249 256 1 225 372 0 0 chr3 83171419 83171505 -144353073 + L2 LINE L2 3186 3271 -1 186 43 0 0 chr3 83172196 83172219 -144352359 + (TG)n Simple_repeat Simple_repeat 2 24 0 662 291 158 9 chr3 83173616 83173963 -144350615 + L2 LINE L2 2915 3313 0 279 341 0 0 chr3 83174211 83174293 -144350285 + MIR SINE MIR 6 87 -175 1422 146 13 13 chr3 83174295 83174528 -144350050 + AluJb SINE Alu 25 257 -55 1541 173 14 7 chr3 83174816 83175094 -144349484 + AluJo SINE Alu 17 296 -16 389 262 62 50 chr3 83175608 83175827 -144348751 + MIR SINE MIR 9 227 -35 2325 103 3 3 chr3 83175830 83176132 -144348446 + AluSp SINE Alu 1 302 -11 306 0 0 0 chr3 83177023 83177057 -144347521 + (TG)n Simple_repeat Simple_repeat 2 35 0 457 167 30 15 chr3 83177532 83177664 -144346914 + GA-rich Low_complexity Low_complexity 4 137 0 299 258 28 28 chr3 83177851 83178029 -144346549 + (CAAA)n Simple_repeat Simple_repeat 1 178 0 680 182 105 28 chr3 83179159 83179340 -144345238 - MER20 DNA MER1_type 0 219 25 253 91 0 68 chr3 83179683 83179754 -144344824 - Alu SINE Alu 0 302 252 222 62 0 0 chr3 83180306 83180338 -144344240 + (A)n Simple_repeat Simple_repeat 1 32 0 292 353 138 18 chr3 83181358 83181576 -144343002 + MIR SINE MIR 15 258 -4 29 0 0 0 chr3 83182219 83182248 -144342330 + AT_rich Low_complexity Low_complexity 1 29 0 1216 218 111 7 chr3 83182338 83182645 -144341933 - MER58B DNA MER1_type 0 341 3 1757 148 3 33 chr3 83182955 83183259 -144341319 + AluJo SINE Alu 1 295 -17 21 0 0 0 chr3 83183357 83183378 -144341200 + AT_rich Low_complexity Low_complexity 1 21 0 280 292 82 59 chr3 83184011 83184230 -144340348 + L1MC/D LINE L1 5422 5645 -2163 1638 195 22 0 chr3 83184245 83184561 -144340017 + AluJb SINE Alu 1 322 0 357 288 9 9 chr3 83185774 83185885 -144338693 + MIR SINE MIR 34 144 -118 813 215 81 14 chr3 83187739 83187948 -144336630 + MIR SINE MIR 14 236 -26 444 330 88 7 chr3 83188220 83188493 -144336085 - L3 LINE CR1 -104 1473 1179 180 324 0 0 chr3 83188826 83188894 -144335684 - MIR SINE MIR -24 238 171 207 0 0 0 chr3 83188923 83188946 -144335632 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1978 120 25 0 chr3 83188948 83189223 -144335355 - AluSg SINE Alu -28 282 1 316 57 0 38 chr3 83189406 83189459 -144335119 + (TTTTC)n Simple_repeat Simple_repeat 2 52 0 2102 123 30 3 chr3 83190137 83190437 -144334141 - AluSx SINE Alu -4 308 1 2275 105 0 0 chr3 83191693 83191997 -144332581 - AluSg1 SINE Alu -5 304 1 502 186 0 0 chr3 83191997 83192083 -144332495 - AluJ/FRAM SINE Alu -3 309 224 2056 133 3 16 chr3 83192779 83193095 -144331483 + AluSx SINE Alu 1 312 0 1028 143 7 0 chr3 83193099 83193253 -144331325 + AluSg/x SINE Alu 119 273 -37 248 0 31 0 chr3 83193256 83193288 -144331290 + (CAAA)n Simple_repeat Simple_repeat 4 36 0 2062 78 0 4 chr3 83193333 83193589 -144330989 + AluY SINE Alu 50 304 -7 329 335 140 0 chr3 83197115 83197294 -144327284 - MIR SINE MIR 0 262 59 295 265 272 14 chr3 83199189 83199336 -144325242 - MER5A DNA MER1_type 0 189 5 612 294 35 20 chr3 83200748 83200949 -144323629 - MER102a DNA MER1_type 0 330 127 705 239 77 0 chr3 83204480 83204635 -144319943 - MER96 DNA MER1_type? -8 167 1 385 309 63 24 chr3 83205170 83205377 -144319201 - MIR SINE MIR -38 224 10 377 243 60 106 chr3 83206712 83206947 -144317631 + MER102a DNA MER1_type 104 327 -3 447 19 0 0 chr3 83207760 83207812 -144316766 + (CTCA)n Simple_repeat Simple_repeat 4 55 0 2219 87 7 7 chr3 83207861 83208159 -144316419 + AluSq SINE Alu 1 298 -15 299 267 50 20 chr3 83208484 83208585 -144315993 + MER91C DNA MER1_type 37 140 0 291 306 67 53 chr3 83208597 83208806 -144315772 + MIR SINE MIR 48 259 -3 464 225 33 60 chr3 83210156 83210307 -144314271 + MER5A DNA MER1_type 40 186 -3 342 164 0 16 chr3 83210318 83210379 -144314199 - MER5A DNA MER1_type 0 189 130 1270 144 5 0 chr3 83210387 83210589 -144313989 + L1MA6 LINE L1 6036 6238 -62 189 107 0 0 chr3 83211280 83211308 -144313270 + (A)n Simple_repeat Simple_repeat 1 28 0 2125 116 10 13 chr3 83211772 83212082 -144312496 - AluSc SINE Alu 0 309 1 227 226 19 0 chr3 83212117 83212170 -144312408 + MIR SINE MIR 99 152 -110 1217 172 10 0 chr3 83212396 83212599 -144311979 - MER3 DNA MER1_type 0 209 5 310 307 39 24 chr3 83213013 83213140 -144311438 + MER5B DNA MER1_type 1 129 -49 2065 128 0 0 chr3 83213152 83213434 -144311144 - AluSx SINE Alu -30 282 1 1461 151 4 8 chr3 83213455 83213707 -144310871 - AluJb SINE Alu -26 286 36 226 276 113 35 chr3 83213791 83213994 -144310584 - L1ME LINE L1 -210 5911 5693 207 0 0 0 chr3 83214212 83214235 -144310343 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 554 150 0 0 chr3 83214695 83214775 -144309803 + Tigger3(Golem) DNA MER2_type 1 80 -2949 549 196 59 0 chr3 83214895 83214997 -144309581 + Tigger3(Golem) DNA MER2_type 2920 3027 -2 242 291 51 26 chr3 83215001 83215118 -144309460 - MIR3 SINE MIR -3 205 86 240 274 14 14 chr3 83215423 83215496 -144309082 + CT-rich Low_complexity Low_complexity 2 74 0 631 293 138 31 chr3 83215957 83216354 -144308224 - L1ME4a LINE L1 -2 6119 5645 1776 170 17 0 chr3 83216354 83216648 -144307930 - AluJb SINE Alu -12 300 2 631 293 138 31 chr3 83216648 83216799 -144307779 - L1ME4a LINE L1 -476 5645 5512 26 0 0 0 chr3 83216861 83216887 -144307691 + AT_rich Low_complexity Low_complexity 1 26 0 264 214 10 126 chr3 83217094 83217197 -144307381 - L2 LINE L2 0 3313 3223 284 242 0 15 chr3 83218128 83218194 -144306384 + MIR SINE MIR 120 184 -78 558 322 70 21 chr3 83218201 83218443 -144306135 + MIR SINE MIR 3 256 -6 31 88 0 0 chr3 83218506 83218586 -144305992 + AT_rich Low_complexity Low_complexity 1 80 0 1679 138 52 45 chr3 83218824 83219114 -144305464 - AluSx SINE Alu -20 292 1 1151 140 8 117 chr3 83219670 83219927 -144304651 - AluJo SINE Alu 0 312 84 630 228 115 48 chr3 83220190 83220307 -144304271 + MER33 DNA MER1_type 1 88 -2497 2346 95 0 10 chr3 83220307 83220613 -144303965 + AluSx SINE Alu 1 303 -9 630 228 115 48 chr3 83220613 83220785 -144303793 + MER33 DNA MER1_type 88 299 -2286 2385 90 0 0 chr3 83220785 83221084 -144303494 - AluY SINE Alu -12 299 1 630 228 115 48 chr3 83221084 83221107 -144303471 + MER33 DNA MER1_type 299 319 -5 785 219 13 75 chr3 83221355 83221583 -144302995 - MER20 DNA MER1_type -4 215 2 238 235 44 15 chr3 83221585 83221653 -144302925 - L1ME LINE L1 -2156 5652 5583 2070 103 72 3 chr3 83221724 83222015 -144302563 - AluSq SINE Alu -2 311 1 2015 138 3 0 chr3 83222126 83222422 -144302156 - AluSg SINE Alu -13 297 1 284 299 100 52 chr3 83222688 83222919 -144301659 - MIR SINE MIR -1 261 20 196 343 37 9 chr3 83222926 83223034 -144301544 - L2 LINE L2 -2 3311 3201 183 42 0 0 chr3 83223094 83223118 -144301460 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 405 344 62 21 chr3 83223146 83223338 -144301240 - L2 LINE L2 -261 3052 2853 221 300 95 74 chr3 83223373 83223453 -144301125 - L2 LINE L2 -685 2629 2552 2991 138 38 45 chr3 83223453 83223664 -144300914 + L1MA5A LINE L1 5746 5957 -340 2473 73 0 0 chr3 83223664 83223965 -144300613 + AluY SINE Alu 1 301 -10 2991 138 38 45 chr3 83223965 83224309 -144300269 + L1MA5A LINE L1 5957 6297 0 221 300 95 74 chr3 83224309 83224471 -144300107 - L2 LINE L2 -762 2552 2382 219 36 0 0 chr3 83225051 83225079 -144299499 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 258 237 85 104 chr3 83225536 83225747 -144298831 + L1MC/D LINE L1 5671 5877 -1931 371 231 10 39 chr3 83226289 83226393 -144298185 - MLT1K LTR MaLR -13 575 475 262 339 56 66 chr3 83226710 83226996 -144297582 - L2 LINE L2 -55 3217 2935 2066 126 3 3 chr3 83229679 83229973 -144294605 - AluSx SINE Alu -18 294 1 258 310 216 38 chr3 83232069 83232356 -144292222 - L3 LINE CR1 -919 658 321 1534 44 0 0 chr3 83232654 83232834 -144291744 + AluY SINE Alu 130 309 -2 24 0 0 0 chr3 83235878 83235902 -144288676 + AT_rich Low_complexity Low_complexity 1 24 0 419 259 95 19 chr3 83238397 83238555 -144286023 + MER117 DNA MER1_type 2 171 -26 1537 186 79 7 chr3 83238768 83239058 -144285520 + AluJb SINE Alu 1 311 -1 291 140 0 0 chr3 83239087 83239137 -144285441 + (CTA)n Simple_repeat Simple_repeat 1 50 0 1042 144 29 17 chr3 83239142 83239315 -144285263 + AluJo SINE Alu 124 298 -14 434 136 12 0 chr3 83239356 83239437 -144285141 + G-rich Low_complexity Low_complexity 2 83 0 1552 136 51 51 chr3 83239566 83239839 -144284739 - AluSq SINE Alu -1 312 40 23 33 0 0 chr3 83240296 83240326 -144284252 + AT_rich Low_complexity Low_complexity 1 30 0 2285 109 0 0 chr3 83241716 83242018 -144282560 - AluY SINE Alu -9 302 1 1153 184 9 96 chr3 83242683 83242740 -144281838 - MER33 DNA MER1_type -2286 299 239 1746 175 6 16 chr3 83242740 83243055 -144281523 + AluJo SINE Alu 1 312 0 1153 184 9 96 chr3 83243055 83243104 -144281474 - MER33 DNA MER1_type -2346 239 187 2428 101 0 0 chr3 83243104 83243412 -144281166 + AluSg SINE Alu 1 308 -2 1153 184 9 96 chr3 83243412 83243648 -144280930 - MER33 DNA MER1_type -2398 187 1 416 300 97 31 chr3 83244316 83244543 -144280035 + MIR SINE MIR 9 250 -12 190 365 99 19 chr3 83244634 83244845 -144279733 + MIR SINE MIR 20 247 -15 327 279 125 10 chr3 83245115 83245219 -144279359 - L2 LINE L2 -5 3308 3193 2261 104 0 7 chr3 83245407 83245716 -144278862 + AluSg SINE Alu 3 309 -1 2332 73 7 10 chr3 83246686 83246986 -144277592 - AluY SINE Alu -12 299 1 2159 92 0 7 chr3 83247071 83247355 -144277223 + AluSg SINE Alu 2 320 0 246 27 54 0 chr3 83247355 83247392 -144277186 + (CAAAA)n Simple_repeat Simple_repeat 2 180 0 204 200 0 0 chr3 83250639 83250684 -144273894 + A-rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr3 83252004 83252025 -144272553 + AT_rich Low_complexity Low_complexity 1 21 0 1398 248 116 34 chr3 83253774 83254302 -144270276 + MLT1K LTR MaLR 2 572 -16 2302 87 3 0 chr3 83254597 83254895 -144269683 + AluSg SINE Alu 1 299 -11 431 291 17 46 chr3 83255433 83255608 -144268970 - MIR SINE MIR -10 252 83 2087 132 3 3 chr3 83255704 83256014 -144268564 - AluY SINE Alu -1 310 1 215 301 91 42 chr3 83256526 83256669 -144267909 + L2 LINE L2 2942 3091 -181 598 276 27 54 chr3 83256856 83257117 -144267461 - MIR SINE MIR 0 262 9 2193 110 0 29 chr3 83257274 83257583 -144266995 - AluSq SINE Alu -13 300 1 2313 108 3 0 chr3 83258196 83258501 -144266077 + AluY SINE Alu 1 306 -5 269 250 60 83 chr3 83258666 83258834 -144265744 - L3 LINE CR1 -829 748 585 25 31 0 0 chr3 83259100 83259132 -144265446 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr3 83261188 83261210 -144263368 + AT_rich Low_complexity Low_complexity 1 22 0 485 292 7 7 chr3 83261428 83261572 -144263006 - MIR SINE MIR -59 203 60 276 335 51 6 chr3 83262130 83262288 -144262290 + MIR SINE MIR 79 243 -19 339 284 99 77 chr3 83262489 83262886 -144261692 - MLT1L LTR MaLR -35 580 72 22 35 0 0 chr3 83263837 83263866 -144260712 + AT_rich Low_complexity Low_complexity 1 29 0 2360 88 3 7 chr3 83263921 83264226 -144260352 - AluSx SINE Alu -4 308 5 1188 161 29 10 chr3 83264384 83264589 -144259989 - MER3 DNA MER1_type 0 209 1 781 213 71 38 chr3 83264598 83264809 -144259769 + MER20 DNA MER1_type 2 219 0 202 277 0 0 chr3 83265078 83265125 -144259453 + CT-rich Low_complexity Low_complexity 1 47 0 711 265 46 14 chr3 83265298 83265517 -144259061 + MIR SINE MIR 37 262 0 2131 85 30 20 chr3 83266122 83266417 -144258161 - AluSg SINE Alu -12 298 1 2153 107 10 10 chr3 83266539 83266837 -144257741 - AluSx SINE Alu -14 298 1 2019 127 0 44 chr3 83266873 83267188 -144257390 + AluSx SINE Alu 1 301 -11 2436 77 3 19 chr3 83267225 83267535 -144257043 + AluSg SINE Alu 1 305 -5 374 279 73 15 chr3 83267776 83267912 -144256666 - MIR SINE MIR -109 153 10 1867 77 4 8 chr3 83268793 83269027 -144255551 + AluSx SINE Alu 1 233 -79 210 200 14 14 chr3 83269179 83269249 -144255329 + (TA)n Simple_repeat Simple_repeat 2 71 0 260 194 48 0 chr3 83269981 83270043 -144254535 - MIR SINE MIR -95 167 103 509 0 16 0 chr3 83271360 83271421 -144253157 + (GGAA)n Simple_repeat Simple_repeat 3 64 0 318 26 0 0 chr3 83275968 83276007 -144248571 + (TG)n Simple_repeat Simple_repeat 2 40 0 1932 153 3 3 chr3 83278644 83278945 -144245633 - AluSx SINE Alu -11 301 1 1152 223 70 35 chr3 83279225 83279625 -144244953 + MER113 DNA MER1_type? 5 418 -103 216 0 0 0 chr3 83280389 83280413 -144244165 + (TA)n Simple_repeat Simple_repeat 2 25 0 2365 95 0 3 chr3 83280974 83281279 -144243299 + AluSg SINE Alu 1 304 -6 515 235 168 7 chr3 83282406 83282555 -144242023 + MER5A DNA MER1_type 11 183 -6 193 283 91 30 chr3 83282574 83282673 -144241905 + MIR SINE MIR 37 141 -121 295 281 24 43 chr3 83282738 83282902 -144241676 - L2 LINE L2 -37 3276 3116 883 206 14 41 chr3 83284242 83284461 -144240117 + MER20 DNA MER1_type 1 213 -6 2226 115 0 0 chr3 83284524 83284812 -144239766 - AluSx SINE Alu -24 288 1 279 328 26 56 chr3 83285729 83285961 -144238617 + L2 LINE L2 1897 2121 -1193 886 217 22 52 chr3 83286006 83286236 -144238342 - MER58A DNA MER1_type 0 224 2 287 342 33 0 chr3 83286275 83286427 -144238151 + L2 LINE L2 2201 2357 -957 534 199 0 53 chr3 83286760 83286891 -144237687 + Charlie5 DNA MER1_type 1 124 -2488 1509 175 94 14 chr3 83286893 83287253 -144237325 + Charlie5 DNA MER1_type 2236 2624 0 222 37 0 0 chr3 83287668 83287695 -144236883 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 1754 160 0 18 chr3 83287921 83288250 -144236328 + AluJb SINE Alu 13 336 0 1423 143 200 4 chr3 83288507 83288787 -144235791 + MER1B DNA MER1_type 3 337 0 2226 88 0 0 chr3 83289332 83289606 -144234972 + AluSc SINE Alu 3 276 -33 219 36 0 0 chr3 83289608 83289636 -144234942 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 2079 96 0 0 chr3 83289869 83290140 -144234438 - AluSx SINE Alu -5 307 37 192 328 99 15 chr3 83290718 83290849 -144233729 + L2 LINE L2 2891 3032 -240 2387 96 3 0 chr3 83290872 83291175 -144233403 + AluY SINE Alu 1 304 -7 248 164 200 0 chr3 83292098 83292153 -144232425 + L2 LINE L2 3248 3313 0 180 179 0 0 chr3 83292402 83292441 -144232137 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 281 100 20 0 chr3 83294006 83294056 -144230522 + (TC)n Simple_repeat Simple_repeat 2 52 0 243 294 0 39 chr3 83294058 83294211 -144230367 + CT-rich Low_complexity Low_complexity 3 149 0 2243 124 0 0 chr3 83295743 83296041 -144228537 - AluSx SINE Alu -14 298 1 342 0 0 0 chr3 83296620 83296658 -144227920 + (CA)n Simple_repeat Simple_repeat 2 39 0 1818 160 44 9 chr3 83296865 83297203 -144227375 + L1PB4 LINE L1 5807 6156 0 2185 116 0 28 chr3 83297233 83297551 -144227027 + AluSx SINE Alu 1 309 -3 652 297 52 22 chr3 83298763 83298995 -144225583 + MIR SINE MIR 24 262 0 1706 182 0 23 chr3 83299734 83300041 -144224537 + AluJb SINE Alu 1 300 -12 2492 81 3 0 chr3 83301482 83301791 -144222787 - AluSg SINE Alu 0 310 1 29 47 0 0 chr3 83302350 83302393 -144222185 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr3 83302437 83302465 -144222113 + AT_rich Low_complexity Low_complexity 1 28 0 2034 122 0 20 chr3 83302935 83303239 -144221339 + AluSg SINE Alu 1 298 -12 250 44 22 22 chr3 83303929 83303974 -144220604 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 2035 121 0 7 chr3 83303974 83304256 -144220322 - AluSx SINE Alu -32 280 1 329 246 0 116 chr3 83304477 83304615 -144219963 + MLT1J1 LTR MaLR 41 162 -284 1794 114 16 36 chr3 83304939 83305246 -144219332 + AluSg SINE Alu 1 301 -9 2255 100 0 0 chr3 83305248 83305527 -144219051 - AluSg SINE Alu -30 280 2 215 309 71 32 chr3 83305641 83305767 -144218811 - L2 LINE L2 -12 3301 3171 777 166 10 116 chr3 83306547 83306624 -144217954 - MER5A DNA MER1_type -6 183 99 1711 125 84 30 chr3 83306624 83306920 -144217658 - AluSx SINE Alu 0 312 1 777 166 10 116 chr3 83306920 83307041 -144217537 - MER5A DNA MER1_type -90 99 6 1180 234 3 25 chr3 83307339 83307625 -144216953 + AluJo SINE Alu 1 280 -32 343 288 38 124 chr3 83307650 83307841 -144216737 + L2 LINE L2 2813 3019 -294 2164 120 0 28 chr3 83307841 83308158 -144216420 - AluSx SINE Alu -4 308 1 343 288 38 124 chr3 83308158 83308514 -144216064 + L2 LINE L2 3019 3313 0 298 274 92 67 chr3 83309432 83309596 -144214982 + MIR3 SINE MIR 38 205 -3 2097 133 3 10 chr3 83310155 83310463 -144214115 + AluSx SINE Alu 1 306 -6 209 303 101 10 chr3 83312039 83312138 -144212440 - MIR SINE MIR -71 191 84 465 277 38 19 chr3 83313330 83313489 -144211089 - MIR SINE MIR -95 167 6 2477 171 30 111 chr3 83314175 83314772 -144209806 + MER44D DNA MER2_type 1 604 -1 1159 237 55 41 chr3 83315116 83315352 -144209226 - MER113 DNA MER1_type? -44 477 231 1660 229 6 17 chr3 83315352 83315697 -144208881 + MER58B DNA MER1_type 1 341 0 1159 237 55 41 chr3 83315697 83315878 -144208700 - MER113 DNA MER1_type? -290 231 54 189 0 0 0 chr3 83316548 83316569 -144208009 + (T)n Simple_repeat Simple_repeat 1 21 0 2273 72 41 0 chr3 83316996 83317287 -144207291 - AluY SINE Alu -8 303 1 2002 154 0 3 chr3 83317287 83317593 -144206985 - AluJo SINE Alu -7 305 1 1463 185 18 11 chr3 83317853 83318134 -144206444 + AluJo SINE Alu 15 297 -15 455 320 78 42 chr3 83318243 83318549 -144206029 + MLT1K LTR MaLR 104 420 -168 1846 109 25 11 chr3 83319788 83320064 -144204514 + AluSx SINE Alu 4 283 -29 336 24 0 0 chr3 83320067 83320108 -144204470 + (CAAA)n Simple_repeat Simple_repeat 2 42 0 228 231 0 0 chr3 83321477 83321555 -144203023 + (TATATG)n Simple_repeat Simple_repeat 6 83 0 308 326 27 76 chr3 83322173 83322310 -144202268 + MIR SINE MIR 29 152 -110 2254 107 0 7 chr3 83322310 83322609 -144201969 + AluSc SINE Alu 7 303 -6 308 326 27 76 chr3 83322609 83322695 -144201883 + MIR SINE MIR 152 241 -21 24 0 0 0 chr3 83322707 83322731 -144201847 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr3 83325332 83325357 -144199221 + AT_rich Low_complexity Low_complexity 1 25 0 977 128 0 0 chr3 83329703 83329836 -144194742 - FLAM_C SINE Alu -10 133 1 2544 65 3 0 chr3 83330660 83330967 -144193611 + AluSp SINE Alu 1 308 -5 1196 283 66 14 chr3 83331183 83331607 -144192971 + L2 LINE L2 2868 3313 0 22 0 0 0 chr3 83331737 83331759 -144192819 + AT_rich Low_complexity Low_complexity 1 22 0 534 201 158 14 chr3 83332213 83332352 -144192226 - MIR SINE MIR -88 174 16 874 219 6 22 chr3 83332476 83332654 -144191924 - MER45A DNA AcHobo -3 175 1 285 146 0 0 chr3 83332745 83332793 -144191785 + (TA)n Simple_repeat Simple_repeat 2 49 0 233 119 0 0 chr3 83332793 83332835 -144191743 - LTR66 LTR ERVL -171 439 398 249 119 0 0 chr3 83333214 83333256 -144191322 + (CA)n Simple_repeat Simple_repeat 2 43 0 623 240 8 0 chr3 83334333 83334454 -144190124 - FLAM_A SINE Alu -11 122 1 195 267 289 0 chr3 83334768 83334858 -144189720 - MIR SINE MIR -66 142 27 1692 133 10 44 chr3 83335452 83335784 -144188794 - AluSx SINE Alu 0 322 1 290 258 30 0 chr3 83335909 83335975 -144188603 + L2 LINE L2 3241 3308 -5 386 320 143 59 chr3 83336968 83337139 -144187439 + L2 LINE L2 2911 3066 -247 2394 94 0 0 chr3 83337139 83337436 -144187142 + AluSg SINE Alu 1 297 -13 386 320 143 59 chr3 83337436 83337636 -144186942 + L2 LINE L2 3066 3313 0 279 194 75 0 chr3 83340849 83340916 -144183662 - L1MC5 LINE L1 -58 7903 7832 2130 99 20 23 chr3 83341053 83341355 -144183223 + AluSx SINE Alu 1 301 -11 258 364 97 14 chr3 83341649 83341866 -144182712 + MIR SINE MIR 15 249 -13 658 144 21 0 chr3 83342824 83342921 -144181657 - AluJ/FLAM SINE Alu -212 100 2 331 195 49 37 chr3 83343106 83343188 -144181390 + MER117 DNA MER1_type 77 159 -38 2161 128 0 3 chr3 83345778 83346074 -144178504 + AluSq SINE Alu 1 295 -18 1702 112 0 0 chr3 83347188 83347412 -144177166 - AluSq SINE Alu -39 274 51 291 93 23 0 chr3 83347673 83347716 -144176862 - AluSq SINE Alu -258 44 1 23 0 0 0 chr3 83349380 83349403 -144175175 + AT_rich Low_complexity Low_complexity 1 23 0 1734 92 8 54 chr3 83350055 83350315 -144174263 + AluSq SINE Alu 1 248 -65 2238 114 3 0 chr3 83350998 83351297 -144173281 - AluSx SINE Alu -12 300 1 3588 129 14 0 chr3 83351915 83352435 -144172143 - MER1A DNA MER1_type 0 527 1 208 196 22 0 chr3 83352860 83352906 -144171672 - L2 LINE L2 0 3313 3267 232 175 0 63 chr3 83353055 83353118 -144171460 - MER20B DNA MER1_type -691 92 34 328 292 76 14 chr3 83353587 83353731 -144170847 + MIR SINE MIR 53 205 -57 397 315 68 34 chr3 83353775 83354010 -144170568 + MIR SINE MIR 8 250 -12 23 33 0 0 chr3 83355512 83355542 -144169036 + AT_rich Low_complexity Low_complexity 1 30 0 30 27 0 0 chr3 83355584 83355621 -144168957 + AT_rich Low_complexity Low_complexity 1 37 0 204 324 265 0 chr3 83355652 83355754 -144168824 + L2 LINE L2 3141 3269 -3 395 331 60 20 chr3 83355779 83356030 -144168548 - MIR SINE MIR 0 262 2 222 37 0 0 chr3 83356090 83356117 -144168461 + (TTTTC)n Simple_repeat Simple_repeat 4 30 0 1821 121 14 7 chr3 83356120 83356400 -144168178 - AluSx SINE Alu -30 282 1 703 209 45 60 chr3 83356482 83356683 -144167895 - MIR SINE MIR 0 262 65 260 82 0 20 chr3 83356768 83356817 -144167761 + (TTTTA)n Simple_repeat Simple_repeat 5 52 0 277 292 34 77 chr3 83358158 83358367 -144166211 + L3b LINE CR1 1103 1302 -281 714 236 20 0 chr3 83358954 83359102 -144165476 + MER5A DNA MER1_type 3 153 -36 213 329 14 0 chr3 83359425 83359495 -144165083 + (TCCA)n Simple_repeat Simple_repeat 2 72 0 187 278 0 0 chr3 83359495 83359549 -144165029 - L2 LINE L2 0 3272 3219 372 170 18 36 chr3 83359598 83359710 -144164868 + (TATG)n Simple_repeat Simple_repeat 4 113 0 195 129 0 0 chr3 83359715 83359746 -144164832 + (CA)n Simple_repeat Simple_repeat 2 32 0 2041 130 9 35 chr3 83360797 83361142 -144163436 - MER1B DNA MER1_type 0 337 2 2027 140 0 0 chr3 83361662 83361948 -144162630 - AluSx SINE Alu -26 286 1 185 329 13 38 chr3 83362662 83362741 -144161837 + MIR3 SINE MIR 99 175 -33 2393 89 7 0 chr3 83362802 83363105 -144161473 + AluSq SINE Alu 1 305 -8 32 26 0 0 chr3 83364573 83364612 -144159966 + AT_rich Low_complexity Low_complexity 1 39 0 266 373 39 7 chr3 83364785 83364938 -144159640 + MIR3 SINE MIR 38 195 -13 776 224 23 0 chr3 83365268 83365442 -144159136 - MER5A DNA MER1_type -3 186 9 255 125 0 0 chr3 83365550 83365590 -144158988 + (A)n Simple_repeat Simple_repeat 1 40 0 437 358 77 18 chr3 83365606 83366128 -144158450 + L2 LINE L2 2746 3313 0 441 330 5 16 chr3 83366173 83366358 -144158220 - MIR SINE MIR -4 258 76 421 256 20 132 chr3 83366507 83366757 -144157821 - MER102b DNA MER1_type -32 309 88 2050 102 46 0 chr3 83367172 83367457 -144157121 + AluSc SINE Alu 1 298 -11 219 88 0 0 chr3 83367584 83367618 -144156960 + (TG)n Simple_repeat Simple_repeat 2 35 0 324 263 71 62 chr3 83367806 83368046 -144156532 + L1MCa LINE L1 1680 1921 -4505 780 187 60 6 chr3 83369367 83369533 -144155045 - MER5A DNA MER1_type -14 175 1 239 291 35 35 chr3 83369662 83369748 -144154830 + LTR33 LTR ERVL 1 86 -435 231 208 112 72 chr3 83369810 83369935 -144154643 + LTR33 LTR ERVL 238 367 -154 235 208 0 0 chr3 83370041 83370094 -144154484 - L1MC4 LINE L1 -1338 6704 6652 24 0 0 0 chr3 83370559 83370583 -144153995 + AT_rich Low_complexity Low_complexity 1 24 0 1966 150 17 0 chr3 83371436 83371729 -144152849 + AluSx SINE Alu 1 298 -14 326 245 0 29 chr3 83371771 83371815 -144152763 + MER46A DNA MER2_type 1 45 -191 2313 99 3 0 chr3 83371815 83372118 -144152460 - AluSc SINE Alu -5 304 1 326 245 0 29 chr3 83372118 83372175 -144152403 + MER46A DNA MER2_type 45 99 -137 533 61 61 0 chr3 83372176 83372258 -144152320 + L1MA2 LINE L1 6037 6123 -181 1587 115 0 0 chr3 83373940 83374149 -144150429 + AluSg/x SINE Alu 93 301 -9 273 301 21 0 chr3 83374565 83374658 -144149920 + MIR3 SINE MIR 60 154 -54 230 298 94 30 chr3 83375465 83375597 -144148981 - MIR SINE MIR -64 144 44 2327 84 0 22 chr3 83375942 83376253 -144148325 - AluY SINE Alu -7 304 1 496 263 99 0 chr3 83376730 83376901 -144147677 + MIR SINE MIR 35 222 -40 454 327 45 5 chr3 83377306 83377505 -144147073 + MIR SINE MIR 20 226 -36 2440 82 0 0 chr3 83378111 83378405 -144146173 - AluY SINE Alu -17 294 1 571 250 153 5 chr3 83378430 83378626 -144145952 - MIR SINE MIR -18 244 20 463 327 12 0 chr3 83379330 83379498 -144145080 + MIR SINE MIR 45 214 -48 1976 168 36 36 chr3 83379723 83380111 -144144467 - MLT1B LTR MaLR -2 388 1 1395 197 8 4 chr3 83380164 83380418 -144144160 + AluJo SINE Alu 37 291 -21 2264 89 3 10 chr3 83380425 83380729 -144143849 + AluSx SINE Alu 1 302 -10 1992 117 46 3 chr3 83380735 83381018 -144143560 + AluSx SINE Alu 1 295 -17 26 0 0 0 chr3 83382018 83382044 -144142534 + AT_rich Low_complexity Low_complexity 1 26 0 574 284 48 14 chr3 83382504 83382712 -144141866 - MIR SINE MIR 0 262 48 209 259 17 17 chr3 83383226 83383284 -144141294 + MIR3 SINE MIR 15 72 -136 1311 279 52 64 chr3 83383606 83384179 -144140399 + L2 LINE L2 2248 2805 -508 1624 197 95 25 chr3 83384179 83384610 -144139968 + MER65C LTR ERV1 1 461 0 1311 279 52 64 chr3 83384610 83385108 -144139470 + L2 LINE L2 2805 3308 -5 23 0 0 0 chr3 83385471 83385494 -144139084 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr3 83385962 83385984 -144138594 + (A)n Simple_repeat Simple_repeat 1 22 0 770 232 71 114 chr3 83386552 83386991 -144137587 + L1MC4 LINE L1 7623 8042 0 2267 102 0 0 chr3 83387094 83387399 -144137179 + AluSx SINE Alu 1 305 0 334 280 68 8 chr3 83388211 83388329 -144136249 + MIR SINE MIR 22 146 -116 291 263 38 12 chr3 83389054 83389134 -144135444 + MLT1J2 LTR MaLR 122 203 -247 365 183 24 12 chr3 83389243 83389325 -144135253 + MLT1J1 LTR MaLR 364 446 0 185 316 0 25 chr3 83389354 83389433 -144135145 - L2 LINE L2 -8 3264 3188 2140 119 0 0 chr3 83389494 83389780 -144134798 + AluSx SINE Alu 1 286 -26 183 204 0 0 chr3 83390561 83390610 -144133968 + GA-rich Low_complexity Low_complexity 1 49 0 2209 108 17 0 chr3 83391780 83392067 -144132511 + AluSx SINE Alu 1 292 -20 259 289 55 83 chr3 83392122 83392340 -144132238 + Charlie8 DNA MER1_type 4 215 -2202 325 314 100 29 chr3 83392963 83393173 -144131405 + MIR SINE MIR 20 244 -18 1925 198 17 0 chr3 83393509 83393863 -144130715 + MLT1C LTR MaLR 62 421 -46 1369 138 18 0 chr3 83394699 83394917 -144129661 + AluSg/x SINE Alu 87 308 -4 22 35 0 0 chr3 83395059 83395088 -144129490 + AT_rich Low_complexity Low_complexity 1 29 0 201 277 142 26 chr3 83395929 83396084 -144128494 + MER5B DNA MER1_type 1 173 -5 21 0 0 0 chr3 83396204 83396225 -144128353 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 83396326 83396356 -144128222 + AT_rich Low_complexity Low_complexity 1 30 0 2011 134 0 17 chr3 83396364 83396655 -144127923 + AluSx SINE Alu 1 286 -26 300 53 0 0 chr3 83396660 83396698 -144127880 + (CAAA)n Simple_repeat Simple_repeat 2 39 0 2402 86 3 0 chr3 83397216 83397517 -144127061 + AluSp SINE Alu 1 302 -11 421 300 58 0 chr3 83397593 83397713 -144126865 - MER91A DNA MER1_type -44 152 26 3081 199 54 45 chr3 83399907 83400647 -144123931 + MER21B LTR ERV1 12 761 -102 1801 180 69 19 chr3 83400647 83401024 -144123554 + MSTD LTR MaLR 1 396 0 3081 199 54 45 chr3 83401024 83401080 -144123498 + MER21B LTR ERV1 761 815 -48 323 291 156 28 chr3 83401183 83401362 -144123216 - MIR SINE MIR -28 234 33 219 245 0 0 chr3 83402029 83402082 -144122496 + GA-rich Low_complexity Low_complexity 1 53 0 1996 138 10 0 chr3 83402632 83402922 -144121656 - AluJb SINE Alu -18 294 2 21 0 0 0 chr3 83403060 83403081 -144121497 + AT_rich Low_complexity Low_complexity 1 21 0 1898 171 46 31 chr3 83403729 83404145 -144120433 + Tigger2a DNA MER2_type 1 422 -12 797 207 23 32 chr3 83404504 83404608 -144119970 + MER8 DNA MER2_type 1 104 -135 1909 107 33 4 chr3 83404608 83404880 -144119698 + AluSq SINE Alu 1 280 -33 210 37 0 0 chr3 83404880 83404907 -144119671 + (CAA)n Simple_repeat Simple_repeat 1 27 0 797 207 23 32 chr3 83404907 83405018 -144119560 + MER8 DNA MER2_type 102 215 -24 364 283 62 57 chr3 83405098 83405275 -144119303 - MER5A DNA MER1_type 0 189 12 1693 160 42 3 chr3 83405949 83406066 -144118512 + AluJb SINE Alu 1 112 -200 246 32 0 0 chr3 83406066 83406097 -144118481 + (CAA)n Simple_repeat Simple_repeat 2 32 0 1693 160 42 3 chr3 83406097 83406267 -144118311 + AluJb SINE Alu 112 299 -13 187 293 67 0 chr3 83406665 83406740 -144117838 - L3b LINE CR1 -373 1210 1131 281 331 118 0 chr3 83408113 83408240 -144116338 + MIR SINE MIR 24 165 -97 1680 176 42 9 chr3 83408286 83408616 -144115962 + MER58B DNA MER1_type 1 341 0 2522 186 34 2 chr3 83408691 83409223 -144115355 - L1MB7 LINE L1 -16 6168 5620 2542 196 70 18 chr3 83409223 83409629 -144114949 - L1MB7 LINE L1 -1003 5143 4681 2379 72 0 31 chr3 83409629 83409948 -144114630 - AluY SINE Alu -2 309 1 2542 196 70 18 chr3 83409948 83410264 -144114314 - L1MB7 LINE L1 -1465 4681 4383 325 221 211 11 chr3 83410431 83410526 -144114052 + L2 LINE L2 3199 3312 -1 505 318 44 44 chr3 83411039 83411291 -144113287 - MIR SINE MIR -3 259 8 195 322 0 0 chr3 83411558 83411617 -144112961 + MIR SINE MIR 49 107 -101 189 268 0 0 chr3 83414506 83414562 -144110016 + (TA)n Simple_repeat Simple_repeat 1 56 0 225 231 0 0 chr3 83414567 83414619 -144109959 - L1MC4 LINE L1 -1339 6703 6652 22 0 0 0 chr3 83414715 83414737 -144109841 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr3 83414778 83414816 -144109762 + AT_rich Low_complexity Low_complexity 1 38 0 253 250 0 28 chr3 83414885 83414957 -144109621 + A-rich Low_complexity Low_complexity 3 72 0 23 0 0 0 chr3 83415621 83415644 -144108934 + AT_rich Low_complexity Low_complexity 1 23 0 281 243 27 52 chr3 83415708 83415841 -144108737 + MIR SINE MIR 20 148 -73 246 208 0 56 chr3 83417444 83417516 -144107062 + GA-rich Low_complexity Low_complexity 2 69 0 204 97 0 0 chr3 83418802 83418833 -144105745 + (CA)n Simple_repeat Simple_repeat 2 32 0 1857 168 24 0 chr3 83418929 83419226 -144105352 - AluJb SINE Alu -8 304 1 502 239 137 41 chr3 83419347 83419544 -144105034 - MIR SINE MIR 0 262 47 2022 138 0 7 chr3 83419914 83420204 -144104374 - AluSx SINE Alu -24 288 1 225 0 0 0 chr3 83420390 83420415 -144104163 + (A)n Simple_repeat Simple_repeat 1 25 0 666 274 8 47 chr3 83420786 83421020 -144103558 + MIR SINE MIR 6 230 -32 386 298 121 23 chr3 83422925 83423230 -144101348 + L1M4 LINE L1 4459 4793 -1353 22 35 0 0 chr3 83423506 83423535 -144101043 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr3 83423558 83423595 -144100983 + AT_rich Low_complexity Low_complexity 1 37 0 729 170 81 30 chr3 83423619 83423854 -144100724 + MER114 LTR ERV 39 285 -363 1859 145 16 22 chr3 83425457 83425768 -144098810 + AluSq SINE Alu 1 309 -4 231 114 0 0 chr3 83425973 83426008 -144098570 + (CA)n Simple_repeat Simple_repeat 2 36 0 207 288 68 27 chr3 83426031 83426104 -144098474 + L2 LINE L2 3199 3274 -39 216 0 0 0 chr3 83426422 83426446 -144098132 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 218 180 40 0 chr3 83426521 83426571 -144098007 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr3 83426829 83426851 -144097727 + AT_rich Low_complexity Low_complexity 1 22 0 713 301 55 52 chr3 83426940 83427150 -144097428 + L2 LINE L2 2431 2644 -670 1568 186 10 19 chr3 83427150 83427457 -144097121 - AluJb SINE Alu -8 304 1 713 301 55 52 chr3 83427457 83427591 -144096987 + L2 LINE L2 2644 2776 -538 406 235 250 8 chr3 83427740 83427872 -144096706 - MER5B DNA MER1_type -13 165 2 26 82 0 0 chr3 83428104 83428165 -144096413 + AT_rich Low_complexity Low_complexity 1 61 0 194 313 15 0 chr3 83428854 83428921 -144095657 + L2 LINE L2 3244 3311 -2 243 0 0 0 chr3 83428970 83428997 -144095581 + (TTTA)n Simple_repeat Simple_repeat 1 27 0 2043 108 7 0 chr3 83428998 83429276 -144095302 - AluSx SINE Alu -32 280 1 467 358 6 6 chr3 83429435 83429614 -144094964 + MIR SINE MIR 6 184 -78 333 232 221 0 chr3 83431568 83431663 -144092915 - L2 LINE L2 -1 3271 3156 1866 109 86 42 chr3 83431704 83432063 -144092515 + THE1C LTR MaLR 1 375 0 656 227 6 0 chr3 83432329 83432505 -144092073 + (TA)n Simple_repeat Simple_repeat 2 178 0 24 32 0 0 chr3 83432556 83432587 -144091991 + AT_rich Low_complexity Low_complexity 1 31 0 24 67 0 0 chr3 83432690 83432735 -144091843 + AT_rich Low_complexity Low_complexity 1 45 0 1730 161 13 29 chr3 83432735 83433045 -144091533 + AluJo SINE Alu 2 306 -6 1533 126 5 0 chr3 83433094 83433308 -144091270 + AluSg/x SINE Alu 83 297 -15 2091 119 3 22 chr3 83433323 83433641 -144090937 + AluSx SINE Alu 1 312 0 1047 181 90 30 chr3 83433648 83433914 -144090664 - AluJo SINE Alu -30 282 1 807 193 21 42 chr3 83434384 83434576 -144090002 + MER5A DNA MER1_type 1 188 -1 252 240 0 42 chr3 83434756 83434852 -144089726 - THE1B LTR MaLR -37 327 236 292 328 210 0 chr3 83435047 83435166 -144089412 - MER91A DNA MER1_type -44 152 9 241 280 0 0 chr3 83435176 83435226 -144089352 - MER91A DNA MER1_type -143 53 4 216 326 92 0 chr3 83435248 83435346 -144089232 - MIR3 SINE MIR -11 197 91 205 278 135 24 chr3 83435823 83435949 -144088629 - MIR SINE MIR -4 258 119 442 257 35 35 chr3 83437875 83438019 -144086559 + MIR SINE MIR 21 164 -98 22 0 0 0 chr3 83438196 83438218 -144086360 + AT_rich Low_complexity Low_complexity 1 22 0 1366 190 4 4 chr3 83439832 83440079 -144084499 + AluJo SINE Alu 40 286 -26 550 291 35 61 chr3 83441005 83441235 -144083343 - L2 LINE L2 0 3313 3090 216 171 0 0 chr3 83441271 83441312 -144083266 + (TG)n Simple_repeat Simple_repeat 2 42 0 24 32 0 0 chr3 83441899 83441930 -144082648 + AT_rich Low_complexity Low_complexity 1 31 0 354 317 72 87 chr3 83441945 83442346 -144082232 + L1ME4a LINE L1 5569 5963 -158 248 221 13 0 chr3 83442347 83442424 -144082154 + (TATATG)n Simple_repeat Simple_repeat 3 80 0 256 301 32 32 chr3 83442617 83442710 -144081868 - L2 LINE L2 -7 3306 3214 753 142 0 0 chr3 83442970 83443097 -144081481 + (TCCC)n Simple_repeat Simple_repeat 2 128 0 2931 186 45 16 chr3 83443522 83444205 -144080373 + MER54A LTR ERVL 1 703 -198 10955 56 8 8 chr3 83444582 83446108 -144078470 - L1P LINE L1 -4269 1877 351 194 143 0 0 chr3 83447285 83447313 -144077265 + MIR SINE MIR 22 49 -213 382 352 48 16 chr3 83447787 83448037 -144076541 + L3b LINE CR1 1156 1413 -170 2128 132 0 3 chr3 83448150 83448460 -144076118 - AluY SINE Alu -2 309 1 1232 61 0 6 chr3 83448523 83448686 -144075892 - L1PA5 LINE L1 -1 6153 5992 22 35 0 0 chr3 83448810 83448839 -144075739 + AT_rich Low_complexity Low_complexity 1 29 0 389 320 0 0 chr3 83449045 83449217 -144075361 + T-rich Low_complexity Low_complexity 1 172 0 334 191 235 26 chr3 83449999 83450114 -144074464 + L2 LINE L2 3175 3313 0 29 70 0 0 chr3 83452713 83452770 -144071808 + AT_rich Low_complexity Low_complexity 1 57 0 217 279 66 0 chr3 83456092 83456153 -144068425 + MIR SINE MIR 62 126 -136 1500 179 6 56 chr3 83456367 83456691 -144067887 + AluJo SINE Alu 1 308 -4 2141 112 6 10 chr3 83457272 83457585 -144066993 + AluSp SINE Alu 2 313 0 204 214 0 0 chr3 83457632 83457688 -144066890 + (TTAAA)n Simple_repeat Simple_repeat 1 56 0 450 264 0 9 chr3 83457884 83457994 -144066584 - MIR SINE MIR -1 261 153 1680 178 3 20 chr3 83459321 83459613 -144064965 + AluJo SINE Alu 1 287 -25 2526 55 3 3 chr3 83460290 83460599 -144063979 + AluY SINE Alu 1 309 -2 243 0 0 0 chr3 83461518 83461545 -144063033 + (CA)n Simple_repeat Simple_repeat 2 28 0 1757 146 59 7 chr3 83461623 83461911 -144062667 - AluSx SINE Alu -9 303 1 483 242 70 90 chr3 83461911 83462167 -144062411 + MER102b DNA MER1_type 91 341 0 844 205 240 4 chr3 83462350 83462604 -144061974 + MER46C DNA MER2_type 1 314 -24 183 42 0 0 chr3 83462829 83462853 -144061725 + (TTTTTA)n Simple_repeat Simple_repeat 3 26 0 300 98 0 0 chr3 83467152 83467170 -144057408 + (T)n Simple_repeat Simple_repeat 1 18 -33 294 29 0 0 chr3 83467170 83467205 -144057373 + (TA)n Simple_repeat Simple_repeat 2 36 0 300 98 0 0 chr3 83467205 83467237 -144057341 + (T)n Simple_repeat Simple_repeat 17 51 0 1435 165 82 21 chr3 83467308 83467587 -144056991 - AluJb SINE Alu -16 296 1 2361 52 0 14 chr3 83467670 83468008 -144056570 - AluY SINE Alu 0 334 1 2026 151 0 25 chr3 83468293 83468610 -144055968 - AluJb SINE Alu -3 309 1 289 329 86 14 chr3 83470020 83470183 -144054395 + MIR SINE MIR 2 178 -30 247 319 89 22 chr3 83470462 83470597 -144053981 - MIR SINE MIR -103 159 16 287 276 35 0 chr3 83471337 83471424 -144053154 + MER5A DNA MER1_type 16 105 -84 203 111 0 56 chr3 83471717 83471753 -144052825 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 291 242 16 0 chr3 83472852 83472914 -144051664 + MIR SINE MIR 87 149 -59 373 293 13 31 chr3 83473067 83473221 -144051357 + MIR SINE MIR 15 169 -39 200 267 22 0 chr3 83473212 83473252 -144051326 + L2 LINE L2 3251 3291 -22 475 238 257 5 chr3 83473252 83473458 -144051120 + MIR SINE MIR 3 260 -2 352 285 59 70 chr3 83473670 83473856 -144050722 + MIR SINE MIR 66 249 -13 194 324 27 0 chr3 83475640 83475714 -144048864 - MIR SINE MIR -109 153 78 446 260 107 13 chr3 83475812 83475962 -144048616 + MLT1K LTR MaLR 123 286 -302 1924 115 23 0 chr3 83475996 83476281 -144048297 + AluSx SINE Alu 16 306 0 333 224 56 9 chr3 83476348 83476455 -144048123 + MLT1K LTR MaLR 454 565 -23 20650 89 1 11 chr3 83476969 83478037 -144046541 + L1PA7 LINE L1 2622 3699 -2455 2163 118 0 7 chr3 83478037 83478342 -144046236 + AluSx SINE Alu 1 303 -9 20650 89 1 11 chr3 83478342 83480800 -144043778 + L1PA7 LINE L1 3699 6154 0 419 247 73 33 chr3 83482169 83482337 -144042241 - MIR SINE MIR -51 211 36 428 207 153 9 chr3 83485092 83485203 -144039375 + L2 LINE L2 3187 3313 0 22 0 0 0 chr3 83485270 83485292 -144039286 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr3 83485292 83485314 -144039264 + (TA)n Simple_repeat Simple_repeat 1 22 0 2234 131 0 0 chr3 83485477 83485789 -144038789 - AluSx SINE Alu 0 312 1 224 295 11 95 chr3 83485952 83486047 -144038531 + MIR SINE MIR 17 103 -105 273 282 26 0 chr3 83486216 83486294 -144038284 - MIR3 SINE MIR -52 156 77 546 266 33 8 chr3 83486965 83487101 -144037477 + MIR3 SINE MIR 20 158 -50 586 208 35 64 chr3 83487224 83487397 -144037181 + MIR SINE MIR 20 187 -75 449 260 130 6 chr3 83487678 83487855 -144036723 + L1ME3A LINE L1 5965 6163 -7 370 149 11 81 chr3 83491588 83491624 -144032954 + MIR3 SINE MIR 125 162 -46 436 277 145 6 chr3 83491624 83491790 -144032788 + MER5A DNA MER1_type 1 189 0 370 149 11 81 chr3 83491790 83491840 -144032738 + MIR3 SINE MIR 162 205 -3 352 315 84 24 chr3 83492245 83492458 -144032120 - Tigger8 DNA MER2_type -2 664 439 684 251 81 9 chr3 83492516 83492727 -144031851 - Tigger8 DNA MER2_type -310 356 131 180 152 0 0 chr3 83496121 83496154 -144028424 + A-rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr3 83496232 83496254 -144028324 + AT_rich Low_complexity Low_complexity 1 22 0 2078 106 3 14 chr3 83496752 83497044 -144027534 - AluSx SINE Alu -23 289 1 1916 142 0 35 chr3 83497355 83497671 -144026907 - AluJb SINE Alu -7 305 1 324 0 0 0 chr3 83497925 83497961 -144026617 + (TG)n Simple_repeat Simple_repeat 2 37 0 1262 182 42 68 chr3 83498298 83498381 -144026197 - MER58B DNA MER1_type -2081 339 255 2183 126 0 3 chr3 83498381 83498683 -144025895 - AluSq SINE Alu -12 301 1 1262 182 42 68 chr3 83498683 83498907 -144025671 - MER58B DNA MER1_type -2165 255 40 23 54 0 0 chr3 83499421 83499458 -144025120 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr3 83500077 83500100 -144024478 + AT_rich Low_complexity Low_complexity 1 23 0 1552 202 3 21 chr3 83500276 83500563 -144024015 + AluJo SINE Alu 1 282 -30 24 0 0 0 chr3 83500569 83500593 -144023985 + AT_rich Low_complexity Low_complexity 1 24 0 236 259 37 0 chr3 83501761 83501842 -144022736 - MIR SINE MIR -55 207 124 234 191 0 0 chr3 83502124 83502171 -144022407 + GA-rich Low_complexity Low_complexity 2 48 0 2447 65 0 0 chr3 83502520 83502811 -144021767 + AluY SINE Alu 15 305 -6 1067 216 33 33 chr3 83502962 83503263 -144021315 + L1ME4a LINE L1 5604 5904 -217 25 31 0 0 chr3 83503581 83503613 -144020965 + AT_rich Low_complexity Low_complexity 1 32 0 1919 134 65 0 chr3 83504015 83504305 -144020273 - AluSg SINE Alu 0 310 2 2339 93 0 13 chr3 83504693 83505004 -144019574 - AluSc SINE Alu -2 307 1 2129 75 0 8 chr3 83505013 83505281 -144019297 - AluY SINE Alu -12 299 34 1189 272 29 87 chr3 83505539 83505772 -144018806 + MLT1K LTR MaLR 3 248 -340 1799 166 0 11 chr3 83505772 83506056 -144018522 + AluJb SINE Alu 1 281 -31 1189 272 29 87 chr3 83506056 83506384 -144018194 + MLT1K LTR MaLR 248 531 -57 3504 157 14 55 chr3 83506609 83507264 -144017314 + L1MB7 LINE L1 5487 6112 -72 2073 113 38 0 chr3 83507264 83507556 -144017022 - AluSx SINE Alu -9 303 1 3504 157 14 55 chr3 83507556 83507615 -144016963 + L1MB7 LINE L1 6112 6172 -12 617 236 68 0 chr3 83507723 83507884 -144016694 + MIR SINE MIR 79 250 -12 758 241 37 46 chr3 83508452 83508668 -144015910 - MIR SINE MIR -13 249 36 438 254 166 36 chr3 83508766 83508959 -144015619 - MIR SINE MIR -14 248 31 238 200 44 0 chr3 83509463 83509508 -144015070 - Tigger5 DNA MER2_type -1996 327 281 328 256 41 16 chr3 83510540 83510661 -144013917 - MIR SINE MIR -3 259 136 2015 103 57 0 chr3 83511051 83511333 -144013245 + AluSx SINE Alu 9 306 -6 201 289 0 40 chr3 83512115 83512191 -144012387 + (TGAA)n Simple_repeat Simple_repeat 4 76 0 404 286 114 6 chr3 83513455 83513630 -144010948 - MIR SINE MIR -3 259 66 419 125 0 58 chr3 83514192 83514296 -144010282 + (GGGGA)n Simple_repeat Simple_repeat 3 100 0 242 184 0 0 chr3 83514303 83514341 -144010237 + polypurine Low_complexity Low_complexity 4 41 0 942 167 10 88 chr3 83514639 83514831 -144009747 + MER45A DNA AcHobo 1 177 -1 2427 83 7 0 chr3 83514854 83515156 -144009422 - AluSx SINE Alu -8 304 1 324 266 77 86 chr3 83515675 83515908 -144008670 + L1ME4a LINE L1 5782 6012 -109 1955 52 44 20 chr3 83515991 83516243 -144008335 - AluY SINE Alu -11 300 43 244 211 42 28 chr3 83521235 83521306 -144003272 - MER5A DNA MER1_type -5 184 113 243 243 108 61 chr3 83521253 83521401 -144003177 + MER5A DNA MER1_type 35 189 0 * 212 350 20 30 chr3 83521538 83521638 -144002940 - MER5A DNA MER1_type -3 186 88 258 32 0 0 chr3 83521652 83521683 -144002895 + (CA)n Simple_repeat Simple_repeat 2 32 0 25 31 0 0 chr3 83522538 83522570 -144002008 + AT_rich Low_complexity Low_complexity 1 32 0 333 68 0 0 chr3 83525815 83525859 -143998719 + (T)n Simple_repeat Simple_repeat 1 44 0 38 68 0 0 chr3 83529233 83529306 -143995272 + GC_rich Low_complexity Low_complexity 1 73 0 288 154 0 0 chr3 83529636 83529688 -143994890 + T-rich Low_complexity Low_complexity 1 52 0 198 171 0 0 chr3 83529866 83529907 -143994671 + (CACG)n Simple_repeat Simple_repeat 3 43 0 189 121 0 0 chr3 83530009 83530042 -143994536 + (CGG)n Simple_repeat Simple_repeat 3 35 0 207 156 0 0 chr3 83530189 83530221 -143994357 + C-rich Low_complexity Low_complexity 1 32 0 234 0 0 0 chr3 83531434 83531460 -143993118 + (TTG)n Simple_repeat Simple_repeat 2 27 0 256 264 132 22 chr3 83532070 83532161 -143992417 - L2 LINE L2 -21 3251 3151 309 220 88 0 chr3 83532171 83532262 -143992316 - MIR SINE MIR 0 262 164 270 226 151 9 chr3 83533466 83533572 -143991006 + MER113 DNA MER1_type? 108 228 -293 186 191 0 0 chr3 83533690 83533732 -143990846 + T-rich Low_complexity Low_complexity 1 42 0 264 216 54 0 chr3 83533732 83533806 -143990772 + MER113 DNA MER1_type? 365 442 -79 349 274 20 20 chr3 83533867 83533969 -143990609 - MIR SINE MIR -69 139 38 347 282 174 13 chr3 83534956 83535105 -143989473 + MER5A DNA MER1_type 11 183 -6 1920 221 30 57 chr3 83536380 83536442 -143988136 + L1MD3 LINE L1 6538 6600 -1395 231 103 0 0 chr3 83536442 83536481 -143988097 + (CA)n Simple_repeat Simple_repeat 2 40 0 1920 221 30 57 chr3 83536481 83536942 -143987636 + L1MD3 LINE L1 6600 7047 -948 238 185 19 37 chr3 83537008 83537062 -143987516 + MER5A DNA MER1_type 114 166 -23 348 303 80 43 chr3 83537066 83537254 -143987324 - MER102b DNA MER1_type -20 321 127 1760 181 3 3 chr3 83537649 83537947 -143986631 + AluJb SINE Alu 1 298 -14 850 199 62 0 chr3 83538438 83538599 -143985979 - MER5B DNA MER1_type -3 175 5 180 135 54 27 chr3 83538775 83538812 -143985766 + MER5A DNA MER1_type 14 51 -138 241 343 46 37 chr3 83538875 83538983 -143985595 + MER5A DNA MER1_type 77 185 -4 283 333 122 36 chr3 83539233 83539455 -143985123 + MIR SINE MIR 15 255 -7 761 192 141 45 chr3 83539780 83539978 -143984600 - MER20 DNA MER1_type 0 219 3 551 256 8 23 chr3 83540882 83541011 -143983567 - L2 LINE L2 0 3313 3187 221 255 0 0 chr3 83541363 83541410 -143983168 + GA-rich Low_complexity Low_complexity 1 47 0 397 274 179 11 chr3 83542407 83542597 -143981981 + L2 LINE L2 3091 3312 -1 1022 280 94 22 chr3 83543195 83543228 -143981350 - MARNA DNA Mariner -9 577 548 336 24 0 0 chr3 83543228 83543269 -143981309 + (CA)n Simple_repeat Simple_repeat 1 41 0 1022 280 94 22 chr3 83543269 83543735 -143980843 - MARNA DNA Mariner -38 548 42 378 244 42 48 chr3 83543991 83544147 -143980431 - L1ME4a LINE L1 0 6121 5965 294 29 0 0 chr3 83544147 83544182 -143980396 + (TG)n Simple_repeat Simple_repeat 1 35 0 378 244 42 48 chr3 83544182 83544193 -143980385 - L1ME4a LINE L1 -156 5965 5955 525 249 83 30 chr3 83544195 83544409 -143980169 + MIR SINE MIR 45 262 0 1157 124 36 41 chr3 83544714 83544908 -143979670 + MER20 DNA MER1_type 23 215 -4 463 371 50 0 chr3 83544988 83545209 -143979369 - MIR SINE MIR -14 248 17 533 278 50 33 chr3 83545289 83545469 -143979109 + MER117 DNA MER1_type 15 197 0 422 240 103 51 chr3 83547482 83547657 -143976921 + MIR SINE MIR 1 184 -78 1367 286 86 9 chr3 83547657 83548087 -143976491 - LTR16B LTR ERVL 0 464 2 228 135 0 0 chr3 83548156 83548193 -143976385 + (ATGGTG)n Simple_repeat Simple_repeat 4 40 0 224 330 103 20 chr3 83548195 83548398 -143976180 + L2 LINE L2 602 821 -2493 2687 221 30 44 chr3 83548477 83548936 -143975642 + L1ME1 LINE L1 228 692 -5704 2696 16 0 13 chr3 83548936 83549240 -143975338 + AluYb8 SINE Alu 1 300 -18 2687 221 30 44 chr3 83549240 83549251 -143975327 + L1ME1 LINE L1 692 702 -5694 2302 89 3 10 chr3 83549251 83549554 -143975024 + AluY SINE Alu 1 301 -10 2687 221 30 44 chr3 83549554 83549810 -143974768 + L1ME1 LINE L1 702 945 -5451 5670 207 78 55 chr3 83549813 83551020 -143973558 + L1ME1 LINE L1 2975 4153 -2062 2030 152 0 0 chr3 83551020 83551322 -143973256 + AluJo SINE Alu 11 312 0 5670 207 78 55 chr3 83551322 83551880 -143972698 + L1ME1 LINE L1 4153 4697 -1518 348 0 0 23 chr3 83551880 83551924 -143972654 + (TTA)n Simple_repeat Simple_repeat 2 180 0 2250 109 0 0 chr3 83551924 83552207 -143972371 - AluSx SINE Alu -29 283 1 5670 207 78 55 chr3 83552207 83552428 -143972150 + L1ME1 LINE L1 4696 5017 -1198 761 223 33 33 chr3 83552423 83552607 -143971971 + AluJb SINE Alu 120 303 -9 * 1339 221 58 33 chr3 83552610 83553238 -143971340 + L1ME1 LINE L1 5027 5657 -578 839 215 0 38 chr3 83553240 83553426 -143971152 - FRAM SINE Alu 0 176 1 397 240 0 24 chr3 83553426 83553551 -143971027 + L1ME1 LINE L1 5653 5774 -654 329 147 107 0 chr3 83553549 83553624 -143970954 + L1MB3 LINE L1 6101 6183 0 * 1699 265 36 2 chr3 83553656 83554098 -143970480 + L1ME1 LINE L1 5760 6216 -19 298 323 140 53 chr3 83554569 83554925 -143969653 + L2 LINE L2 2877 3263 -9 371 140 52 118 chr3 83555779 83555915 -143968663 - Charlie7 DNA MER1_type 0 2612 2486 1075 170 50 103 chr3 83555984 83556201 -143968377 + AluJo SINE Alu 1 199 -103 2281 117 0 0 chr3 83556201 83556499 -143968079 - AluSx SINE Alu -14 298 1 1075 170 50 103 chr3 83556499 83556581 -143967997 + AluJo SINE Alu 199 284 -18 280 183 52 104 chr3 83556593 83556708 -143967870 - Charlie7 DNA MER1_type -2499 113 5 225 305 112 41 chr3 83557268 83557465 -143967113 - Charlie8 DNA MER1_type -2146 271 61 1200 206 0 18 chr3 83557531 83557759 -143966819 + MER58A DNA MER1_type 1 224 0 536 254 19 67 chr3 83558001 83558210 -143966368 + MIR SINE MIR 19 217 -45 526 291 59 73 chr3 83558598 83558732 -143965846 + L1MC4 LINE L1 7505 7639 -403 2184 110 0 7 chr3 83558732 83559023 -143965555 + AluSg SINE Alu 1 289 -21 526 291 59 73 chr3 83559023 83559394 -143965184 + L1MC4 LINE L1 7639 8003 -39 21 0 0 0 chr3 83559427 83559448 -143965130 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 83559469 83559504 -143965074 + AT_rich Low_complexity Low_complexity 1 35 0 2263 115 0 13 chr3 83559582 83559895 -143964683 + AluSx SINE Alu 1 309 -3 1724 199 93 46 chr3 83559923 83560405 -143964173 - MLT1D LTR MaLR 0 505 1 2402 81 3 0 chr3 83560456 83560751 -143963827 - AluSp SINE Alu -17 296 1 207 0 0 0 chr3 83560777 83560800 -143963778 + (CAG)n Simple_repeat Simple_repeat 2 24 0 409 277 35 7 chr3 83560804 83560945 -143963633 - MIR SINE MIR -12 250 106 180 0 0 0 chr3 83561400 83561420 -143963158 + (A)n Simple_repeat Simple_repeat 1 20 0 2338 110 0 0 chr3 83561431 83561731 -143962847 + AluSc SINE Alu 1 300 -9 876 92 0 0 chr3 83562435 83562554 -143962024 + AluY SINE Alu 193 311 0 915 218 63 15 chr3 83563236 83563442 -143961136 - MER20 DNA MER1_type 0 219 4 2259 111 0 0 chr3 83563813 83564111 -143960467 - AluSx SINE Alu -14 298 1 337 280 30 68 chr3 83564131 83564263 -143960315 + MER5B DNA MER1_type 2 128 -50 1314 167 13 17 chr3 83564282 83564516 -143960062 - AluJo SINE Alu -31 281 49 831 294 104 51 chr3 83565325 83565875 -143958703 + MLT1K LTR MaLR 2 580 -8 1524 134 37 0 chr3 83566033 83566250 -143958328 - AluJb SINE Alu -17 295 71 368 288 58 22 chr3 83566844 83566983 -143957595 + MIR SINE MIR 2 145 -117 284 300 20 10 chr3 83567528 83567628 -143956950 - L2 LINE L2 -6 3307 3207 218 371 40 32 chr3 83568271 83568395 -143956183 + L2 LINE L2 3125 3249 -23 202 236 0 18 chr3 83568487 83568542 -143956036 - MER5B DNA MER1_type -117 61 8 374 265 66 42 chr3 83568755 83568921 -143955657 + L1MC4a LINE L1 5713 5882 -1926 1767 199 75 11 chr3 83568942 83569379 -143955199 + MLT1C LTR MaLR 1 465 -2 233 269 0 15 chr3 83569644 83569711 -143954867 + MIR SINE MIR 103 168 -94 886 197 37 32 chr3 83569963 83570181 -143954397 - MER20 DNA MER1_type 0 219 1 422 238 157 58 chr3 83570191 83570264 -143954314 + MER5A DNA MER1_type 1 65 -124 2134 131 0 3 chr3 83570264 83570561 -143954017 + AluSx SINE Alu 1 296 -16 312 27 0 0 chr3 83570561 83570598 -143953980 + (GGAA)n Simple_repeat Simple_repeat 3 39 0 422 238 157 58 chr3 83570598 83570695 -143953883 + MER5A DNA MER1_type 64 189 0 2196 118 3 0 chr3 83570745 83571041 -143953537 + AluSp SINE Alu 1 297 -16 1824 181 0 0 chr3 83571049 83571341 -143953237 + AluSx SINE Alu 1 292 -20 202 333 54 32 chr3 83571343 83571436 -143953142 + MER5A DNA MER1_type 47 141 -48 2435 103 14 25 chr3 83572457 83572825 -143951753 - THE1B LTR MaLR 0 364 1 475 297 136 4 chr3 83573027 83573263 -143951315 + L1ME LINE L1 5519 5785 -336 2452 73 3 22 chr3 83573366 83573682 -143950896 - AluY SINE Alu -1 310 1 2066 113 7 10 chr3 83573684 83573975 -143950603 - AluSx SINE Alu -19 293 4 366 237 43 88 chr3 83576314 83576547 -143948031 + MLT1I LTR MaLR 57 307 -242 1620 175 20 14 chr3 83576717 83577014 -143947564 - AluJb SINE Alu -2 310 12 263 255 20 107 chr3 83577433 83577582 -143946996 + L2 LINE L2 2185 2320 -994 753 228 149 92 chr3 83577700 83577882 -143946696 + LTR16C LTR ERVL 8 178 -313 2029 161 3 3 chr3 83577882 83578192 -143946386 + AluJb SINE Alu 1 310 -2 753 228 149 92 chr3 83578192 83578453 -143946125 + LTR16C LTR ERVL 178 476 -15 291 28 0 0 chr3 83578514 83578550 -143946028 + (CA)n Simple_repeat Simple_repeat 2 37 0 893 291 121 21 chr3 83578557 83579176 -143945402 - L2 LINE L2 0 3313 2643 207 288 15 0 chr3 83579450 83579516 -143945062 - L2 LINE L2 -259 3054 2988 2113 131 3 10 chr3 83579519 83579825 -143944753 - AluSx SINE Alu -8 304 1 1640 160 20 47 chr3 83580297 83580597 -143943981 - AluJo SINE Alu -18 294 3 381 22 0 0 chr3 83580876 83580922 -143943656 + (TC)n Simple_repeat Simple_repeat 1 46 0 1323 166 45 4 chr3 83581116 83581381 -143943197 + MER33 DNA MER1_type 27 302 -22 2422 95 0 0 chr3 83583162 83583467 -143941111 - AluSx SINE Alu -7 305 1 230 239 14 0 chr3 83583758 83583829 -143940749 + GA-rich Low_complexity Low_complexity 2 73 0 698 278 46 5 chr3 83583985 83584201 -143940377 + MIR SINE MIR 33 257 -5 447 183 39 10 chr3 83585416 83585520 -143939058 - MER5A DNA MER1_type -79 110 4 1639 160 23 16 chr3 83585879 83586186 -143938392 - AluJo SINE Alu -1 311 3 265 186 43 14 chr3 83586191 83586261 -143938317 + MLT1K LTR MaLR 517 588 0 562 230 31 19 chr3 83587169 83587330 -143937248 - MIR SINE MIR -1 261 99 2260 113 0 3 chr3 83587463 83587772 -143936806 - AluSx SINE Alu -4 308 1 338 162 0 95 chr3 83588232 83588306 -143936272 + LTR67 LTR ERVL 474 540 -17 303 289 59 0 chr3 83588444 83588579 -143935999 - MIR SINE MIR -3 259 117 231 114 0 0 chr3 83588852 83588887 -143935691 + (TCCC)n Simple_repeat Simple_repeat 1 35 0 1897 164 0 0 chr3 83588898 83589184 -143935394 - AluJb SINE Alu -26 286 1 717 290 139 55 chr3 83589479 83590020 -143934558 + MLT1K LTR MaLR 2 587 -1 2929 91 35 26 chr3 83590121 83590573 -143934005 + L1MA1 LINE L1 5847 6302 0 1811 142 29 14 chr3 83590585 83590866 -143933712 + AluSx SINE Alu 1 285 -27 39 22 0 0 chr3 83590867 83590913 -143933665 + AT_rich Low_complexity Low_complexity 1 46 0 1883 253 167 27 chr3 83591114 83591747 -143932831 - L2 LINE L2 -16 3297 2754 252 0 0 0 chr3 83591747 83591775 -143932803 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2230 110 0 0 chr3 83591777 83592059 -143932519 - AluSx SINE Alu -30 282 1 1883 253 167 27 chr3 83592059 83592263 -143932315 - L2 LINE L2 -559 2754 2580 1115 180 13 0 chr3 83592263 83592491 -143932087 - L1MB4 LINE L1 0 6180 5950 1883 253 167 27 chr3 83592491 83592622 -143931956 - L2 LINE L2 -733 2580 2216 2659 52 0 0 chr3 83595128 83595437 -143929141 + AluY SINE Alu 1 309 -2 243 0 0 0 chr3 83596356 83596383 -143928195 + (CA)n Simple_repeat Simple_repeat 2 28 0 1775 146 59 7 chr3 83596461 83596749 -143927829 - AluSx SINE Alu -9 303 1 485 242 70 90 chr3 83596749 83597005 -143927573 + MER102b DNA MER1_type 91 341 0 835 205 240 4 chr3 83597188 83597442 -143927136 + MER46C DNA MER2_type 1 314 -24 183 42 0 0 chr3 83597667 83597691 -143926887 + (TTTTTA)n Simple_repeat Simple_repeat 3 26 0 309 96 0 0 chr3 83601987 83602005 -143922573 + (T)n Simple_repeat Simple_repeat 1 18 -34 294 29 0 0 chr3 83602005 83602040 -143922538 + (TA)n Simple_repeat Simple_repeat 2 36 0 309 96 0 0 chr3 83602040 83602073 -143922505 + (T)n Simple_repeat Simple_repeat 17 52 0 1777 122 82 21 chr3 83602144 83602423 -143922155 - AluJb SINE Alu -16 296 1 2389 52 0 14 chr3 83602506 83602844 -143921734 - AluY SINE Alu 0 334 1 2043 151 0 25 chr3 83603129 83603446 -143921132 - AluJb SINE Alu -3 309 1 289 329 86 14 chr3 83604856 83605019 -143919559 + MIR SINE MIR 2 178 -30 247 319 89 22 chr3 83605298 83605433 -143919145 - MIR SINE MIR -103 159 16 287 276 35 0 chr3 83606173 83606260 -143918318 + MER5A DNA MER1_type 16 105 -84 203 111 0 56 chr3 83606553 83606589 -143917989 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 291 242 16 0 chr3 83607688 83607750 -143916828 + MIR SINE MIR 87 149 -59 373 293 13 31 chr3 83607903 83608057 -143916521 + MIR SINE MIR 15 169 -39 200 267 22 0 chr3 83608048 83608088 -143916490 + L2 LINE L2 3251 3291 -22 516 243 257 5 chr3 83608088 83608294 -143916284 + MIR SINE MIR 3 260 -2 352 285 59 70 chr3 83608506 83608692 -143915886 + MIR SINE MIR 66 249 -13 194 324 27 0 chr3 83610476 83610550 -143914028 - MIR SINE MIR -109 153 78 417 267 107 13 chr3 83610648 83610798 -143913780 + MLT1K LTR MaLR 123 286 -302 1963 114 15 4 chr3 83610832 83611120 -143913458 + AluSx SINE Alu 16 306 0 333 224 56 9 chr3 83611187 83611294 -143913284 + MLT1K LTR MaLR 454 565 -23 20680 89 1 11 chr3 83611808 83612876 -143911702 + L1PA7 LINE L1 2622 3699 -2455 2163 118 0 7 chr3 83612876 83613181 -143911397 + AluSx SINE Alu 1 303 -9 20680 89 1 11 chr3 83613181 83615639 -143908939 + L1PA7 LINE L1 3699 6154 0 419 247 73 33 chr3 83617008 83617176 -143907402 - MIR SINE MIR -51 211 36 428 207 153 9 chr3 83619930 83620041 -143904537 + L2 LINE L2 3187 3313 0 22 0 0 0 chr3 83620108 83620130 -143904448 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr3 83620130 83620152 -143904426 + (TA)n Simple_repeat Simple_repeat 1 22 0 2234 131 0 0 chr3 83620315 83620627 -143903951 - AluSx SINE Alu 0 312 1 224 295 11 95 chr3 83620790 83620885 -143903693 + MIR SINE MIR 17 103 -105 273 282 26 0 chr3 83621054 83621132 -143903446 - MIR3 SINE MIR -52 156 77 546 266 33 8 chr3 83621803 83621939 -143902639 + MIR3 SINE MIR 20 158 -50 586 208 35 64 chr3 83622062 83622235 -143902343 + MIR SINE MIR 20 187 -75 449 260 130 6 chr3 83622516 83622693 -143901885 + L1ME3A LINE L1 5965 6163 -7 370 149 11 81 chr3 83626428 83626464 -143898114 + MIR3 SINE MIR 125 162 -46 436 277 145 6 chr3 83626464 83626630 -143897948 + MER5A DNA MER1_type 1 189 0 370 149 11 81 chr3 83626630 83626680 -143897898 + MIR3 SINE MIR 162 205 -3 352 315 84 24 chr3 83627085 83627298 -143897280 - Tigger8 DNA MER2_type -2 664 439 684 251 81 9 chr3 83627356 83627567 -143897011 - Tigger8 DNA MER2_type -310 356 131 180 152 0 0 chr3 83630961 83630994 -143893584 + A-rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr3 83631072 83631094 -143893484 + AT_rich Low_complexity Low_complexity 1 22 0 2078 106 3 14 chr3 83631592 83631884 -143892694 - AluSx SINE Alu -23 289 1 1916 142 0 35 chr3 83632195 83632511 -143892067 - AluJb SINE Alu -7 305 1 324 0 0 0 chr3 83632765 83632801 -143891777 + (TG)n Simple_repeat Simple_repeat 2 37 0 1262 182 42 68 chr3 83633138 83633221 -143891357 - MER58B DNA MER1_type -2081 339 255 2183 126 0 3 chr3 83633221 83633523 -143891055 - AluSq SINE Alu -12 301 1 1262 182 42 68 chr3 83633523 83633747 -143890831 - MER58B DNA MER1_type -2165 255 40 519 233 87 52 chr3 83634614 83634786 -143889792 - MIR3 SINE MIR -9 199 22 531 217 69 51 chr3 83635270 83635445 -143889133 + MER104 DNA MER2_type 3 180 0 22 0 0 0 chr3 83636067 83636089 -143888489 + AT_rich Low_complexity Low_complexity 1 22 0 252 250 33 0 chr3 83637586 83637646 -143886932 + CT-rich Low_complexity Low_complexity 3 64 0 967 233 60 16 chr3 83637692 83637941 -143886637 + L1ME3A LINE L1 5911 6170 0 370 224 0 0 chr3 83638457 83638533 -143886045 - MIR SINE MIR -69 139 64 1863 164 7 3 chr3 83638809 83639107 -143885471 - AluJo SINE Alu -12 300 2 195 232 0 0 chr3 83639815 83639871 -143884707 + (TA)n Simple_repeat Simple_repeat 2 57 0 471 268 57 31 chr3 83640891 83641085 -143883493 + MIR SINE MIR 48 246 -16 4954 142 23 33 chr3 83642852 83642910 -143881668 - L1MA3 LINE L1 0 6305 6248 2361 67 7 10 chr3 83642910 83643208 -143881370 - AluY SINE Alu -14 297 1 1964 141 0 17 chr3 83643214 83643511 -143881067 - AluJo SINE Alu -20 292 1 4954 142 23 33 chr3 83643511 83644313 -143880265 - L1MA3 LINE L1 -62 6243 5447 990 304 110 29 chr3 83644625 83645115 -143879463 + MLT1K LTR MaLR 4 533 -55 1898 143 3 23 chr3 83645129 83645429 -143879149 + AluJb SINE Alu 1 294 -18 1923 151 0 13 chr3 83646081 83646385 -143878193 + AluJb SINE Alu 2 301 -11 1659 77 0 5 chr3 83646615 83646824 -143877754 + AluSg/x SINE Alu 95 302 -10 1443 203 62 34 chr3 83647006 83647361 -143877217 + MLT1A1 LTR MaLR 1 365 0 439 212 89 14 chr3 83647447 83647593 -143876985 - MIR SINE MIR -20 242 86 306 303 0 0 chr3 83648206 83648272 -143876306 - MIR SINE MIR -191 71 6 184 318 15 15 chr3 83649354 83649420 -143875158 - L2 LINE L2 -2 3270 3205 216 0 0 0 chr3 83650002 83650026 -143874552 + (A)n Simple_repeat Simple_repeat 1 24 0 385 258 77 41 chr3 83651599 83651820 -143872758 - MER113 DNA MER1_type? -285 236 8 786 191 0 8 chr3 83651986 83652117 -143872461 - FLAM_A SINE Alu -3 130 1 1706 165 0 21 chr3 83652736 83653027 -143871551 + AluJo SINE Alu 12 296 -16 501 263 79 22 chr3 83653356 83653550 -143871028 - MIR SINE MIR -39 223 23 409 239 68 8 chr3 83653621 83653738 -143870840 - MIR SINE MIR -29 233 110 559 222 85 13 chr3 83653774 83653927 -143870651 - MER106B DNA MER1_type 0 1059 896 201 182 36 0 chr3 83654036 83654059 -143870519 + (TTCA)n Simple_repeat Simple_repeat 4 25 -35 1811 118 49 59 chr3 83654059 83654364 -143870214 - AluSx SINE Alu -10 302 1 201 182 36 0 chr3 83654364 83654395 -143870183 + (TTCA)n Simple_repeat Simple_repeat 25 60 0 * 827 248 79 6 chr3 83654394 83654655 -143869923 + L1ME2 LINE L1 5872 6155 -9 1822 162 10 14 chr3 83655575 83655871 -143868707 - AluJo SINE Alu -17 295 1 382 309 15 7 chr3 83655941 83656077 -143868501 - MIR SINE MIR -2 260 124 1853 149 0 20 chr3 83657885 83658187 -143866391 + AluSx SINE Alu 1 296 -16 21 36 0 0 chr3 83658901 83658929 -143865649 + AT_rich Low_complexity Low_complexity 1 28 0 180 0 0 0 chr3 83659043 83659063 -143865515 + (A)n Simple_repeat Simple_repeat 1 20 0 248 325 65 24 chr3 83659288 83659457 -143865121 - MIR SINE MIR -3 259 84 1980 159 0 0 chr3 83659625 83659920 -143864658 - AluJo SINE Alu -9 303 9 2246 112 0 3 chr3 83660120 83660423 -143864155 + AluSq SINE Alu 1 302 -11 668 114 0 30 chr3 83660424 83660555 -143864023 + (GGAA)n Simple_repeat Simple_repeat 1 127 0 181 286 16 0 chr3 83660577 83660640 -143863938 + MIR3 SINE MIR 120 183 -25 1069 197 28 5 chr3 83661238 83661451 -143863127 + MER20 DNA MER1_type 1 218 -1 216 274 170 9 chr3 83661489 83661595 -143862983 - L2 LINE L2 0 3313 3191 375 228 59 0 chr3 83661983 83662084 -143862494 - MIR SINE MIR -50 212 106 2558 60 0 3 chr3 83662422 83662724 -143861854 - AluY SINE Alu -10 301 1 328 328 48 11 chr3 83662797 83662983 -143861595 - MIR SINE MIR -58 204 12 201 279 33 0 chr3 83663364 83663425 -143861153 + MER5A DNA MER1_type 40 102 -87 367 282 0 0 chr3 83663732 83663817 -143860761 + MIR3 SINE MIR 114 198 -10 562 246 96 20 chr3 83663871 83664070 -143860508 + MIR SINE MIR 16 229 -33 296 227 45 18 chr3 83665544 83665654 -143858924 - MER5A DNA MER1_type -74 115 3 199 244 0 0 chr3 83665750 83665791 -143858787 - L2 LINE L2 -22 3250 3210 1783 158 4 0 chr3 83665941 83666207 -143858371 + AluJo SINE Alu 20 286 -26 1576 151 14 65 chr3 83666394 83666685 -143857893 - AluJo SINE Alu -36 276 1 332 277 158 60 chr3 83667432 83667647 -143856931 - L2 LINE L2 -18 3295 3102 1934 138 38 38 chr3 83667647 83668016 -143856562 + THE1C LTR MaLR 5 373 -2 332 277 158 60 chr3 83668016 83668219 -143856359 - L2 LINE L2 -211 3102 2836 514 253 128 64 chr3 83668298 83668674 -143855904 - L2 LINE L2 -839 2475 2076 355 232 67 61 chr3 83669055 83669219 -143855359 - MIR SINE MIR -39 223 59 379 280 93 66 chr3 83670426 83670715 -143853863 - L2 LINE L2 0 3313 3017 229 313 12 12 chr3 83670763 83670843 -143853735 + L2 LINE L2 3191 3270 -2 24 32 0 0 chr3 83671347 83671378 -143853200 + GC_rich Low_complexity Low_complexity 1 31 0 188 57 0 57 chr3 83671464 83671499 -143853079 + (CGG)n Simple_repeat Simple_repeat 3 35 0 39 22 0 0 chr3 83671504 83671550 -143853028 + GC_rich Low_complexity Low_complexity 1 46 0 278 26 26 0 chr3 83671629 83671668 -143852910 + (CCCCG)n Simple_repeat Simple_repeat 1 40 0 34 0 0 0 chr3 83671673 83671707 -143852871 + GC_rich Low_complexity Low_complexity 1 34 0 214 346 20 7 chr3 83672019 83672172 -143852406 + (TGGA)n Simple_repeat Simple_repeat 3 157 0 886 194 65 5 chr3 83673115 83673316 -143851262 - MIR SINE MIR -42 220 8 700 275 97 17 chr3 83673506 83673866 -143850712 - L1MC4a LINE L1 -1876 5932 5544 638 249 6 17 chr3 83674568 83674745 -143849833 - MIR3 SINE MIR -14 194 20 505 243 7 26 chr3 83674985 83675138 -143849440 - MIR3 SINE MIR -10 198 48 253 326 59 22 chr3 83675405 83675540 -143849038 - MIR3 SINE MIR 0 208 69 469 230 168 53 chr3 83675625 83675853 -143848725 + MIR SINE MIR 8 254 -8 306 271 39 54 chr3 83675859 83675988 -143848590 - L2 LINE L2 0 3313 3187 369 0 0 0 chr3 83675989 83676030 -143848548 + (TG)n Simple_repeat Simple_repeat 2 42 0 352 307 67 38 chr3 83676406 83676644 -143847934 + MIR SINE MIR 14 258 -4 1908 142 22 35 chr3 83676903 83677219 -143847359 - AluJb SINE Alu 0 312 1 255 289 132 32 chr3 83677288 83677622 -143846956 + L2 LINE L2 2605 3025 -288 235 308 28 9 chr3 83677712 83677819 -143846759 + L2 LINE L2 3163 3271 -1 271 279 87 0 chr3 83678247 83678351 -143846227 + L2 LINE L2 3158 3270 -2 211 363 18 9 chr3 83679026 83679139 -143845439 + MIR SINE MIR 79 192 -70 487 265 10 0 chr3 83679299 83679401 -143845177 - MER81 DNA DNA 0 114 12 6244 153 14 9 chr3 83682124 83683193 -143841385 + L1MC1 LINE L1 5260 6333 0 329 229 166 45 chr3 83683241 83683398 -143841180 - MIR SINE MIR -70 192 17 722 177 0 16 chr3 83683845 83683969 -143840609 + FLAM_C SINE Alu 2 123 -20 257 0 30 0 chr3 83683969 83684002 -143840576 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 395 234 32 24 chr3 83684016 83684140 -143840438 + L1MDa LINE L1 1800 1924 -4616 1840 206 108 2 chr3 83684144 83684542 -143840036 + L1MDa LINE L1 26 465 -6075 1856 258 71 17 chr3 83684578 83685179 -143839399 + L1MDa LINE L1 2596 3293 -3247 261 0 0 0 chr3 83685179 83685208 -143839370 + (TA)n Simple_repeat Simple_repeat 1 29 0 1856 258 71 17 chr3 83685208 83685527 -143839051 + L1MDa LINE L1 3293 3593 -2947 2923 215 19 22 chr3 83685527 83685614 -143838964 + L1MDa LINE L1 1951 2037 -4684 1901 165 0 3 chr3 83685614 83685911 -143838667 + AluJb SINE Alu 1 296 -16 2923 215 19 22 chr3 83685911 83686592 -143837986 + L1MDa LINE L1 2037 2717 -4004 1930 163 3 0 chr3 83686652 83686947 -143837631 + AluJb SINE Alu 1 296 -16 2053 135 3 10 chr3 83687055 83687367 -143837211 + AluY SINE Alu 1 310 -1 234 150 0 0 chr3 83687377 83687417 -143837161 + (CA)n Simple_repeat Simple_repeat 1 40 0 9948 230 53 23 chr3 83687509 83690558 -143834020 + L1M4 LINE L1 2269 5411 -743 885 208 78 102 chr3 83690556 83690664 -143833914 + HAL1 LINE L1 1569 1678 -829 * 2288 101 0 0 chr3 83690664 83690951 -143833627 + AluSg SINE Alu 1 287 -23 885 208 78 102 chr3 83690951 83691242 -143833336 + HAL1 LINE L1 1678 1958 -549 242 324 37 15 chr3 83692323 83692459 -143832119 + MIR SINE MIR 10 148 -114 4260 197 33 9 chr3 83692873 83694040 -143830538 - L1MB7 LINE L1 -65 6119 4933 1260 226 0 4 chr3 83694353 83694592 -143829986 - MER8 DNA MER2_type 0 239 2 180 250 0 113 chr3 83695142 83695222 -143829356 - L2 LINE L2 -14 3299 3229 316 277 32 11 chr3 83696426 83696520 -143828058 - MIR3 SINE MIR -21 187 92 321 311 56 96 chr3 83696801 83696836 -143827742 + MIR SINE MIR 16 51 -211 1842 135 3 58 chr3 83696836 83696964 -143827614 + AluJb SINE Alu 1 134 -178 2502 71 3 0 chr3 83696964 83697260 -143827318 - AluY SINE Alu -14 297 1 1842 135 3 58 chr3 83697260 83697442 -143827136 + AluJb SINE Alu 134 294 -18 321 311 56 96 chr3 83697442 83697657 -143826921 + MIR SINE MIR 51 256 -6 1137 150 4 80 chr3 83698129 83698172 -143826406 + AluJb SINE Alu 86 131 -181 2504 68 3 0 chr3 83698172 83698468 -143826110 - AluY SINE Alu -14 297 1 1137 150 4 80 chr3 83698468 83698650 -143825928 + AluJb SINE Alu 131 294 -18 435 324 0 0 chr3 83698735 83698871 -143825707 + MIR SINE MIR 127 262 0 359 230 97 88 chr3 83699021 83699238 -143825340 + MLT1J LTR MaLR 97 315 -196 532 209 176 14 chr3 83699553 83699701 -143824877 + MER5A DNA MER1_type 10 181 -8 265 394 13 0 chr3 83699727 83699882 -143824696 + L2 LINE L2 2659 2815 -499 306 240 55 41 chr3 83700013 83700159 -143824419 - L2 LINE L2 -48 3265 3118 183 211 99 56 chr3 83700239 83700310 -143824268 - L2 LINE L2 -350 2963 2890 220 302 130 18 chr3 83700511 83700680 -143823898 + MIR SINE MIR 53 240 -22 21 71 0 0 chr3 83700997 83701039 -143823539 + GC_rich Low_complexity Low_complexity 1 42 0 372 43 0 0 chr3 83701054 83701100 -143823478 + (CGG)n Simple_repeat Simple_repeat 3 48 0 40 21 0 0 chr3 83701686 83701733 -143822845 + GC_rich Low_complexity Low_complexity 1 47 0 28 29 0 0 chr3 83702229 83702264 -143822314 + GC_rich Low_complexity Low_complexity 1 35 0 1799 156 0 14 chr3 83704652 83704935 -143819643 + AluJo SINE Alu 10 288 -24 24 53 0 0 chr3 83705532 83705570 -143819008 + AT_rich Low_complexity Low_complexity 1 38 0 317 197 92 0 chr3 83705761 83705837 -143818741 - L1ME LINE L1 -478 5643 5561 1772 133 21 28 chr3 83705883 83706168 -143818410 - AluSx SINE Alu -13 299 17 230 81 27 0 chr3 83706308 83706345 -143818233 + (TTCC)n Simple_repeat Simple_repeat 1 38 0 647 269 125 12 chr3 83707606 83707862 -143816716 + MLT1L LTR MaLR 291 575 -40 2346 96 10 0 chr3 83708154 83708456 -143816122 - AluSq SINE Alu -8 305 1 1580 185 73 0 chr3 83708456 83708742 -143815836 - AluSx SINE Alu -5 307 1 1447 178 40 25 chr3 83708766 83709079 -143815499 - AluJo SINE Alu 0 319 3 1874 166 3 0 chr3 83709253 83709537 -143815041 + AluSx SINE Alu 9 293 -19 438 257 116 38 chr3 83711631 83711677 -143812901 + LTR52 LTR ERVL 17 58 -363 186 43 0 0 chr3 83711677 83711700 -143812878 + (TC)n Simple_repeat Simple_repeat 2 24 0 438 257 116 38 chr3 83711700 83711939 -143812639 + LTR52 LTR ERVL 58 398 -23 2353 73 3 16 chr3 83712005 83712320 -143812258 + AluY SINE Alu 1 311 0 2407 78 0 0 chr3 83712337 83712646 -143811932 + AluY SINE Alu 1 309 -2 2218 96 0 0 chr3 83712648 83712954 -143811624 + AluSc SINE Alu 1 306 0 380 203 65 122 chr3 83713235 83713358 -143811220 - MLT1J LTR MaLR -325 186 71 796 144 64 0 chr3 83714311 83714436 -143810142 + FLAM_C SINE Alu 1 133 0 1768 99 79 0 chr3 83714531 83714784 -143809794 - AluSg SINE Alu -1 309 37 1467 160 94 14 chr3 83714923 83715198 -143809380 - AluSx SINE Alu -15 297 1 925 153 55 123 chr3 83715374 83715559 -143809019 + MER20 DNA MER1_type 1 168 -51 2306 109 3 3 chr3 83715559 83715871 -143808707 + AluSx SINE Alu 1 312 0 925 153 55 123 chr3 83715871 83715920 -143808658 + MER20 DNA MER1_type 168 219 0 421 300 0 18 chr3 83716684 83716794 -143807784 + MER5B DNA MER1_type 1 108 -70 456 67 0 0 chr3 83716888 83716948 -143807630 + (TA)n Simple_repeat Simple_repeat 2 61 0 1073 134 109 0 chr3 83717027 83717229 -143807349 + L1MA8 LINE L1 6062 6285 -6 1683 139 0 79 chr3 83717987 83718290 -143806288 - AluJb SINE Alu -33 279 1 464 267 21 89 chr3 83720313 83720369 -143804209 - MIR SINE MIR 0 262 204 2017 161 0 0 chr3 83720369 83720680 -143803898 - AluSx SINE Alu -1 311 1 464 267 21 89 chr3 83720680 83720814 -143803764 - MIR SINE MIR -58 204 85 1334 143 9 23 chr3 83722338 83722555 -143802023 + MER20 DNA MER1_type 1 214 -5 394 280 56 0 chr3 83722670 83722777 -143801801 - L2 LINE L2 0 3272 3160 214 384 121 0 chr3 83723157 83723256 -143801322 + L2 LINE L2 3150 3260 -12 517 227 70 16 chr3 83723399 83723527 -143801051 + MER69 DNA AcHobo 1 135 -1091 191 163 0 23 chr3 83723711 83723754 -143800824 + CT-rich Low_complexity Low_complexity 2 43 0 2115 141 0 16 chr3 83723764 83724077 -143800501 - AluSx SINE Alu -4 308 1 1057 118 0 0 chr3 83724412 83724556 -143800022 + L1MD1 LINE L1 6025 6168 -74 285 308 28 0 chr3 83724661 83724768 -143799810 - HAL1b LINE L1 -439 909 800 31 44 0 0 chr3 83724772 83724817 -143799761 + AT_rich Low_complexity Low_complexity 1 45 0 22 56 0 0 chr3 83724882 83724918 -143799660 + AT_rich Low_complexity Low_complexity 1 36 0 2200 60 0 8 chr3 83725333 83725636 -143798942 + AluY SINE Alu 21 321 0 1680 174 7 23 chr3 83727009 83727308 -143797270 - AluJo SINE Alu -18 294 1 21 95 0 0 chr3 83732490 83732553 -143792025 + GC_rich Low_complexity Low_complexity 1 63 0 29 78 0 0 chr3 83732718 83732782 -143791796 + GC_rich Low_complexity Low_complexity 1 64 0 220 269 0 0 chr3 83733020 83733072 -143791506 - L2 LINE L2 0 3272 3221 200 235 0 20 chr3 83733520 83733571 -143791007 - L2 LINE L2 0 3313 3264 492 236 67 45 chr3 83734882 83735060 -143789518 + MIR SINE MIR 81 262 0 250 341 24 65 chr3 83735116 83735239 -143789339 + L2 LINE L2 3137 3254 -18 225 213 64 53 chr3 83735431 83735525 -143789053 - MLT1J1 LTR MaLR -110 336 242 1245 222 69 58 chr3 83735547 83736028 -143788550 + MLT1C LTR MaLR 22 467 0 421 301 63 7 chr3 83736063 83736206 -143788372 - MLT1I LTR MaLR -246 163 13 555 374 52 18 chr3 83736419 83736705 -143787873 - L2 LINE L2 0 3272 2977 1891 160 10 10 chr3 83736713 83737025 -143787553 + AluJo SINE Alu 1 312 0 203 319 42 78 chr3 83737039 83737205 -143787373 - L2 LINE L2 -385 2929 2770 1318 249 93 103 chr3 83737334 83737468 -143787110 + L2 LINE L2 2400 2534 -779 324 18 18 36 chr3 83737468 83737523 -143787055 + (TTATA)n Simple_repeat Simple_repeat 4 57 0 1318 249 93 103 chr3 83737523 83738313 -143786265 + L2 LINE L2 2534 3309 -4 1910 126 25 11 chr3 83738463 83738776 -143785802 + AluSx SINE Alu 1 312 0 821 256 31 0 chr3 83739032 83739227 -143785351 + MER58A DNA MER1_type 24 224 0 196 132 0 53 chr3 83739444 83739482 -143785096 + MIR SINE MIR 220 255 -7 26 0 0 0 chr3 83739600 83739626 -143784952 + AT_rich Low_complexity Low_complexity 1 26 0 1647 143 58 41 chr3 83739626 83739919 -143784659 - AluJb SINE Alu -14 298 1 2211 106 7 7 chr3 83740693 83740995 -143783583 + AluSx SINE Alu 1 302 -10 561 55 0 0 chr3 83741141 83741214 -143783364 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 362 342 19 19 chr3 83741375 83741536 -143783042 - MIR SINE MIR -70 192 32 269 212 15 15 chr3 83741674 83741740 -143782838 + CT-rich Low_complexity Low_complexity 2 67 0 402 254 34 34 chr3 83742121 83742239 -143782339 - MER103 DNA DNA -47 119 2 310 319 132 7 chr3 83742411 83742555 -143782023 - MIR3 SINE MIR -42 166 5 2067 121 0 0 chr3 83743447 83743752 -143780826 + AluSx SINE Alu 1 305 0 230 182 13 104 chr3 83743852 83743929 -143780649 - L2 LINE L2 -5 3267 3198 652 278 0 19 chr3 83744455 83744617 -143779961 + MIR SINE MIR 30 188 -74 670 191 20 26 chr3 83744680 83744832 -143779746 + L1MC4a LINE L1 7658 7808 0 853 187 118 27 chr3 83745392 83745579 -143778999 + MER3 DNA MER1_type 1 204 -5 249 178 111 0 chr3 83745541 83745586 -143778992 - MER3 DNA MER1_type -119 90 41 * 271 305 0 11 chr3 83745759 83745854 -143778724 - MIR SINE MIR -2 260 167 300 317 50 8 chr3 83745869 83745989 -143778589 - MIR SINE MIR 0 262 138 227 241 0 35 chr3 83745967 83746025 -143778553 + MIR SINE MIR 56 111 -151 * 1297 244 14 4 chr3 83746093 83746396 -143778182 + AluJo SINE Alu 1 306 0 373 190 23 23 chr3 83746682 83746783 -143777795 - MLT1K LTR MaLR -8 580 507 668 286 48 37 chr3 83746920 83747193 -143777385 - MLT1K LTR MaLR -306 282 7 2040 149 0 16 chr3 83748037 83748352 -143776226 - AluSx SINE Alu -2 310 1 588 148 52 0 chr3 83748875 83748990 -143775588 - L1MA8 LINE L1 -2 6289 6169 2052 128 0 35 chr3 83748990 83749303 -143775275 - AluSx SINE Alu -10 302 1 759 89 9 9 chr3 83749303 83749415 -143775163 - L1MA8 LINE L1 -190 6101 5990 1187 159 63 5 chr3 83749507 83749714 -143774864 + MER20 DNA MER1_type 1 219 0 416 244 50 87 chr3 83749953 83750195 -143774383 - MLT1J LTR MaLR -3 508 276 521 86 0 0 chr3 83750346 83750416 -143774162 + MLT2B1 LTR ERVL 1 70 -450 1911 123 0 8 chr3 83750431 83750699 -143773879 - AluSx SINE Alu -31 281 16 573 300 94 75 chr3 83750736 83751213 -143773365 + LTR16A1 LTR ERVL 1 486 -5 232 267 0 0 chr3 83751228 83751273 -143773305 + L2 LINE L2 3248 3292 -21 2016 139 3 10 chr3 83751399 83751701 -143772877 - AluSx SINE Alu -12 300 1 2237 128 0 0 chr3 83751907 83752220 -143772358 - AluSq SINE Alu 0 313 1 2342 127 48 11 chr3 83752603 83752974 -143771604 + MSTA LTR MaLR 44 428 0 464 237 8 42 chr3 83752983 83753101 -143771477 + MIR SINE MIR 29 142 -120 407 269 15 22 chr3 83753082 83753216 -143771362 + L2 LINE L2 3181 3313 0 * 193 194 0 0 chr3 83753313 83753349 -143771229 + MIR SINE MIR 223 258 -4 790 242 0 0 chr3 83753452 83753605 -143770973 + FRAM SINE Alu 17 169 -7 25 31 0 0 chr3 83753613 83753645 -143770933 + AT_rich Low_complexity Low_complexity 1 32 0 2371 71 3 3 chr3 83753821 83754115 -143770463 - AluSc SINE Alu -15 294 1 2066 135 0 3 chr3 83754460 83754763 -143769815 - AluJb SINE Alu -10 302 1 1590 196 4 4 chr3 83754768 83755098 -143769480 - AluJb SINE Alu 0 330 1 472 306 32 32 chr3 83755251 83755467 -143769111 - MIR SINE MIR -33 229 14 2137 193 12 14 chr3 83755473 83755892 -143768686 + L1PB4 LINE L1 5738 6155 -1 313 184 325 9 chr3 83756091 83756205 -143768373 - L2 LINE L2 0 3313 3164 586 311 107 52 chr3 83757257 83757951 -143766627 - L2 LINE L2 -721 2593 1862 373 220 167 43 chr3 83758099 83758199 -143766379 + L2 LINE L2 3103 3189 -124 2164 107 0 0 chr3 83758199 83758480 -143766098 + AluSc SINE Alu 27 307 -2 373 220 167 43 chr3 83758480 83758565 -143766013 + L2 LINE L2 3189 3311 -2 369 250 0 11 chr3 83759599 83759687 -143764891 - MLT1I LTR MaLR -16 393 307 1476 253 49 33 chr3 83759784 83760271 -143764307 + L1ME LINE L1 110 604 -5466 55 83 0 0 chr3 83760614 83760746 -143763832 + AT_rich Low_complexity Low_complexity 1 132 0 1581 147 78 17 chr3 83763235 83763528 -143761050 + AluJo SINE Alu 1 311 -1 443 236 96 51 chr3 83763704 83763916 -143760662 + MIR SINE MIR 32 262 0 302 134 12 134 chr3 83763925 83763985 -143760593 - MLT2D LTR ERVL 0 464 438 414 0 0 0 chr3 83763985 83764031 -143760547 + (TG)n Simple_repeat Simple_repeat 2 47 0 302 134 12 134 chr3 83764031 83764052 -143760526 - MLT2D LTR ERVL -26 438 416 2032 184 28 8 chr3 83764169 83764556 -143760022 - MLT2D LTR ERVL -19 395 1 594 256 24 18 chr3 83764636 83764800 -143759778 - MIR SINE MIR -21 241 77 371 176 39 110 chr3 83765229 83765301 -143759277 - Charlie7 DNA MER1_type -27 2585 2509 1935 152 0 0 chr3 83765301 83765591 -143758987 + AluSx SINE Alu 1 290 -22 371 176 39 110 chr3 83765591 83765700 -143758878 - Charlie7 DNA MER1_type -103 2509 2417 342 205 23 78 chr3 83765944 83766130 -143758448 + MIR SINE MIR 5 252 -10 366 191 83 0 chr3 83766298 83766382 -143758196 + MER113 DNA MER1_type? 14 104 -417 23 0 0 0 chr3 83766701 83766724 -143757854 + AT_rich Low_complexity Low_complexity 1 23 0 2233 74 0 37 chr3 83766724 83767020 -143757558 - AluSg SINE Alu -25 285 1 23 33 0 0 chr3 83767093 83767123 -143757455 + AT_rich Low_complexity Low_complexity 1 30 0 826 173 77 13 chr3 83767379 83767535 -143757043 - AluJo SINE Alu -17 295 130 3803 130 21 39 chr3 83767547 83768164 -143756414 + L1PA16 LINE L1 5552 6157 -9 790 168 23 8 chr3 83768165 83768296 -143756282 - AluJo SINE Alu -169 133 1 1252 132 66 38 chr3 83768737 83768950 -143755628 - MER20 DNA MER1_type 0 219 1 315 292 22 15 chr3 83770107 83770244 -143754334 - L1MC/D LINE L1 -1976 5832 5695 203 245 0 0 chr3 83770708 83770757 -143753821 + (TG)n Simple_repeat Simple_repeat 2 50 0 32 0 0 0 chr3 83770867 83770899 -143753679 + AT_rich Low_complexity Low_complexity 1 32 0 386 284 53 58 chr3 83771151 83771341 -143753237 - MER112 DNA MER1_type -20 240 52 1717 142 7 65 chr3 83771380 83771689 -143752889 + AluSx SINE Alu 1 291 -21 713 272 78 47 chr3 83772203 83772798 -143751780 - L2 LINE L2 -1 3312 2668 1040 53 0 30 chr3 83773807 83773938 -143750640 + L1PA8 LINE L1 6045 6171 -1 1753 191 14 0 chr3 83774577 83774871 -143749707 + 7SLRNA srpRNA srpRNA 1 298 -22 248 306 20 0 chr3 83775201 83775299 -143749279 - L1ME LINE L1 -300 5870 5771 2228 99 0 0 chr3 83775299 83775608 -143748970 - AluSx SINE Alu 0 309 1 609 234 107 30 chr3 83775611 83775808 -143748770 - MLT1K LTR MaLR -12 576 365 450 0 0 0 chr3 83775890 83775940 -143748638 + (GA)n Simple_repeat Simple_repeat 1 50 0 309 350 49 0 chr3 83776283 83776446 -143748132 + MIR SINE MIR 20 190 -72 579 205 18 9 chr3 83777756 83777868 -143746710 + MER81 DNA DNA 1 113 -1 447 270 91 85 chr3 83777879 83778242 -143746336 + MLT1H LTR MaLR 23 387 -162 384 282 126 10 chr3 83778340 83778443 -143746135 - L2 LINE L2 -4 3268 3154 1671 230 5 34 chr3 83778453 83778836 -143745742 + Charlie1a DNA MER1_type 37 408 -1047 241 276 47 8 chr3 83778854 83778981 -143745597 + L1 LINE L1 4922 5053 -1093 274 316 63 86 chr3 83779690 83779864 -143744714 - MER91A DNA MER1_type -26 170 1 1197 215 23 9 chr3 83780065 83780284 -143744294 + MER58A DNA MER1_type 3 224 0 733 236 44 16 chr3 83780727 83780909 -143743669 + MIR SINE MIR 21 207 -55 1660 150 17 31 chr3 83780937 83781224 -143743354 - AluJb SINE Alu -14 298 16 1525 150 130 7 chr3 83781324 83781617 -143742961 - LTR1B LTR ERV1 -497 329 1 1545 273 90 26 chr3 83781650 83782192 -143742386 - MLT1G1 LTR MaLR -12 583 7 1015 166 0 50 chr3 83782499 83782680 -143741898 - AluY SINE Alu -6 305 134 426 264 35 24 chr3 83783017 83783192 -143741386 + MIR SINE MIR 1 174 -61 1386 128 0 0 chr3 83783498 83783693 -143740885 + AluSp SINE Alu 116 310 -3 827 165 85 11 chr3 83784127 83784303 -143740275 - MER53 DNA DNA 0 189 1 202 287 27 15 chr3 83784832 83784917 -143739661 - MIR SINE MIR -57 151 98 4364 107 2 0 chr3 83784935 83785488 -143739090 + MER41A LTR ERV1 1 554 0 2378 137 49 6 chr3 83786743 83787093 -143737485 + MLT1A1 LTR MaLR 1 365 0 879 309 74 18 chr3 83787417 83787753 -143736825 + MLT1K LTR MaLR 234 588 0 1117 259 64 15 chr3 83787948 83788291 -143736287 - LTR16C LTR ERVL -3 488 129 1478 192 47 38 chr3 83788832 83789250 -143735328 - LTR1B LTR ERV1 0 824 374 2516 125 18 38 chr3 83789350 83789417 -143735161 + MER4A LTR ERV1 59 126 -538 216 0 0 0 chr3 83789417 83789441 -143735137 + (CAAA)n Simple_repeat Simple_repeat 4 27 0 2516 125 18 38 chr3 83789441 83789924 -143734654 + MER4A LTR ERV1 126 664 0 570 303 103 13 chr3 83790827 83791061 -143733517 - MIR SINE MIR 0 262 8 1259 211 48 69 chr3 83791331 83791749 -143732829 - MER31B LTR ERV1 0 466 58 202 139 0 23 chr3 83791749 83791792 -143732786 + (TTTTTG)n Simple_repeat Simple_repeat 1 42 0 250 178 44 0 chr3 83791800 83791845 -143732733 - MER31B LTR ERV1 -419 47 1 * 1366 155 68 94 chr3 83791845 83792106 -143732472 + MLT1B LTR MaLR 23 221 -169 3129 119 12 0 chr3 83792106 83792535 -143732043 - MER57B LTR ERV1 0 434 1 1366 155 68 94 chr3 83792535 83792701 -143731877 + MLT1B LTR MaLR 221 390 0 840 161 8 0 chr3 83792716 83792846 -143731732 - FLAM_A SINE Alu -1 132 2 282 275 56 42 chr3 83793382 83793524 -143731054 + MIR SINE MIR 78 221 -41 1946 115 4 15 chr3 83793580 83793849 -143730729 + AluSx SINE Alu 1 266 -46 1485 234 0 0 chr3 83793990 83794294 -143730284 - AluJo SINE Alu -8 304 1 1096 175 0 0 chr3 83794759 83794936 -143729642 + AluJb SINE Alu 134 310 -2 336 187 264 0 chr3 83794957 83795048 -143729530 - LTR16C LTR ERVL -178 313 199 266 146 0 0 chr3 83795289 83795337 -143729241 + U5 snRNA snRNA 1 48 -68 414 249 70 32 chr3 83795522 83795707 -143728871 + L2 LINE L2 2818 3009 -263 672 309 50 11 chr3 83796078 83796360 -143728218 + L1MC4 LINE L1 6721 7013 -1029 * 2097 162 12 17 chr3 83796354 83796761 -143727817 + L1MB1 LINE L1 4140 4544 -1602 628 160 0 0 chr3 83796764 83796858 -143727720 - Tigger7 DNA MER2_type -4 2583 2490 * 1426 209 15 22 chr3 83796856 83797124 -143727454 - Tigger7 DNA MER2_type -284 266 1 1933 161 65 51 chr3 83797124 83797558 -143727020 + L1MB1 LINE L1 4542 4981 -1165 1121 166 50 12 chr3 83797561 83797802 -143726776 + L1MB1 LINE L1 5710 5959 -209 742 168 0 30 chr3 83797802 83797933 -143726645 + FLAM_A SINE Alu 7 133 -9 740 167 56 121 chr3 83797936 83798151 -143726427 + L1MB1 LINE L1 5967 6167 -1 21 71 0 0 chr3 83798151 83798193 -143726385 + AT_rich Low_complexity Low_complexity 1 42 0 475 255 42 52 chr3 83798264 83798476 -143726102 + L1MC5 LINE L1 6999 7208 -753 763 235 29 146 chr3 83798553 83799072 -143725506 - MLT1H LTR MaLR 0 549 92 1120 177 30 5 chr3 83799080 83799278 -143725300 + MER3 DNA MER1_type 7 209 0 241 279 115 29 chr3 83799284 83799622 -143724956 + L1MC4 LINE L1 7266 7736 -306 1389 159 46 13 chr3 83799672 83799754 -143724824 + AluJb SINE Alu 45 123 -189 198 0 0 0 chr3 83799754 83799776 -143724802 + (CAA)n Simple_repeat Simple_repeat 3 24 0 1389 159 46 13 chr3 83799776 83799932 -143724646 + AluJb SINE Alu 123 291 -21 23 0 0 0 chr3 83800823 83800846 -143723732 + AT_rich Low_complexity Low_complexity 1 23 0 204 40 0 0 chr3 83802086 83802111 -143722467 + (T)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr3 83802199 83802222 -143722356 + AT_rich Low_complexity Low_complexity 1 23 0 2009 148 0 3 chr3 83802830 83803127 -143721451 + AluSx SINE Alu 3 298 -14 651 254 72 53 chr3 83803130 83803339 -143721239 + MIR SINE MIR 29 241 -21 763 263 143 43 chr3 83803583 83803933 -143720645 - LTR33A LTR ERVL -30 493 109 1277 245 89 65 chr3 83804038 83804333 -143720245 + MLT1K LTR MaLR 3 314 -162 2216 109 3 0 chr3 83804333 83804635 -143719943 + AluSx SINE Alu 1 303 -9 1277 245 89 65 chr3 83804635 83804800 -143719778 + MLT1K LTR MaLR 314 474 -2 29 28 0 0 chr3 83805265 83805301 -143719277 + AT_rich Low_complexity Low_complexity 1 36 0 346 267 11 0 chr3 83805315 83805405 -143719173 - MIR SINE MIR -84 178 88 212 313 180 0 chr3 83806003 83806131 -143718447 + L2 LINE L2 3082 3232 -40 230 157 157 0 chr3 83806470 83806521 -143718057 - L2 LINE L2 0 3272 3214 405 301 151 19 chr3 83806623 83806829 -143717749 - MIR SINE MIR -28 234 2 426 268 47 0 chr3 83807527 83807654 -143716924 + MIR SINE MIR 48 180 -82 2904 7 0 0 chr3 83807903 83808212 -143716366 + AluYa5 SINE Alu 1 309 -2 27 49 0 0 chr3 83808746 83808787 -143715791 + AT_rich Low_complexity Low_complexity 1 41 0 442 214 126 31 chr3 83808805 83808964 -143715614 + MIR SINE MIR 45 218 -44 258 196 54 0 chr3 83808998 83809054 -143715524 - MLT1K LTR MaLR -7 581 523 185 288 17 0 chr3 83809055 83809114 -143715464 - MIR SINE MIR 0 262 203 840 261 90 67 chr3 83809129 83809516 -143715062 - MLT1K LTR MaLR -55 533 138 2356 189 52 45 chr3 83809675 83810229 -143714349 - MER74A LTR ERVL 0 558 1 3380 221 80 34 chr3 83811057 83812288 -143712290 + L1MDb LINE L1 824 2067 -4339 5549 121 31 8 chr3 83812364 83813215 -143711363 + L1PA13 LINE L1 5287 6156 -7 22 0 0 0 chr3 83813215 83813237 -143711341 + AT_rich Low_complexity Low_complexity 1 22 0 444 176 22 0 chr3 83813347 83813438 -143711140 + L1MDb LINE L1 3037 3129 -3277 4181 234 35 5 chr3 83813446 83814728 -143709850 + L1ME1 LINE L1 2116 3391 -2824 3826 240 72 33 chr3 83814769 83814966 -143709612 + L1ME1 LINE L1 3579 3767 -2448 2393 102 47 11 chr3 83814966 83815328 -143709250 + THE1C LTR MaLR 1 375 0 3826 240 72 33 chr3 83815328 83815849 -143708729 + L1ME1 LINE L1 3767 4266 -1949 218 54 0 27 chr3 83815849 83815886 -143708692 + (CA)n Simple_repeat Simple_repeat 2 37 0 3826 240 72 33 chr3 83815886 83816465 -143708113 + L1ME1 LINE L1 4266 4928 -1287 575 244 108 11 chr3 83816466 83816642 -143707936 - L1ME2 LINE L1 -2 6162 5970 2007 223 78 73 chr3 83816649 83817924 -143706654 + L1ME1 LINE L1 4923 6212 -23 239 278 56 0 chr3 83818143 83818197 -143706381 - MER5A DNA MER1_type 0 189 129 207 0 0 0 chr3 83818197 83818220 -143706358 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 239 278 56 0 chr3 83818220 83818237 -143706341 - MER5A DNA MER1_type -60 129 114 212 184 0 0 chr3 83818855 83818893 -143705685 + A-rich Low_complexity Low_complexity 1 38 0 4226 135 24 70 chr3 83819457 83819642 -143704936 + L1MC2 LINE L1 5550 5742 -602 1997 149 10 0 chr3 83819642 83819930 -143704648 + AluSq SINE Alu 1 291 -22 4226 135 24 70 chr3 83819930 83820220 -143704358 + L1MC2 LINE L1 5742 5974 -370 2221 93 7 7 chr3 83820220 83820520 -143704058 + AluSq SINE Alu 1 300 -13 4226 135 24 70 chr3 83820520 83820867 -143703711 + L1MC2 LINE L1 5974 6335 -9 188 310 84 0 chr3 83821128 83821199 -143703379 + MIR SINE MIR 88 164 -98 375 265 8 8 chr3 83821211 83821328 -143703250 - L2 LINE L2 -6 3307 3191 191 275 0 0 chr3 83821360 83821400 -143703178 + L2 LINE L2 3256 3295 -18 1893 148 0 48 chr3 83822015 83822325 -143702253 - AluJb SINE Alu -17 295 1 304 292 107 18 chr3 83822707 83822875 -143701703 - MIR SINE MIR -13 249 67 4185 89 9 2 chr3 83822992 83823542 -143701036 - MER41A LTR ERV1 0 554 1 324 239 85 39 chr3 83824073 83824203 -143700375 + MIR SINE MIR 45 180 -82 402 236 29 57 chr3 83824482 83824622 -143699956 + MIR SINE MIR 124 259 -3 252 276 112 10 chr3 83825336 83825434 -143699144 + MIR SINE MIR 98 205 -57 2018 193 58 0 chr3 83825791 83826190 -143698388 - MER63B DNA MER1_type -14 422 1 1842 115 65 0 chr3 83826324 83826619 -143697959 + AluSq SINE Alu 6 317 0 411 187 87 34 chr3 83827101 83827220 -143697358 + MLT1H LTR MaLR 1 164 -385 386 307 37 31 chr3 83828168 83828331 -143696247 + L1MEc LINE L1 235 398 -5998 1580 171 11 14 chr3 83828478 83828753 -143695825 - AluJb SINE Alu 0 312 39 1925 256 72 60 chr3 83828928 83829556 -143695022 + L1MEc LINE L1 656 1275 -5121 1990 127 0 0 chr3 83829556 83829824 -143694754 + AluSx SINE Alu 38 305 -7 1925 256 72 60 chr3 83829824 83830426 -143694152 + L1MEc LINE L1 1275 1868 -4528 1722 161 14 18 chr3 83830426 83830706 -143693872 + AluJo SINE Alu 1 279 -33 1925 256 72 60 chr3 83830706 83830733 -143693845 + L1MEc LINE L1 1868 1893 -4503 360 0 0 0 chr3 83830733 83830773 -143693805 + (CAA)n Simple_repeat Simple_repeat 3 42 0 1925 256 72 60 chr3 83830773 83830915 -143693663 + L1MEc LINE L1 1893 2074 -4322 3135 267 92 20 chr3 83832433 83832551 -143692027 + L2 LINE L2 1495 1603 -1711 1217 248 29 38 chr3 83832551 83832854 -143691724 + MER58B DNA MER1_type 1 302 -2118 1898 144 34 0 chr3 83832854 83833145 -143691433 + AluSx SINE Alu 1 301 -11 1217 248 29 38 chr3 83833145 83833184 -143691394 + MER58B DNA MER1_type 302 340 -1 3135 267 92 20 chr3 83833184 83833217 -143691361 + L2 LINE L2 1603 1632 -1682 1496 223 94 44 chr3 83833217 83833698 -143690880 + MLT1D LTR MaLR 1 505 0 3135 267 92 20 chr3 83833698 83834749 -143689829 + L2 LINE L2 1632 2785 -529 619 274 147 38 chr3 83835116 83835408 -143689170 + MER115 DNA AcHobo 35 358 -335 356 127 0 0 chr3 83835506 83835561 -143689017 - MLT2B1 LTR ERVL -2 518 464 196 188 12 35 chr3 83835562 83835647 -143688931 + (TA)n Simple_repeat Simple_repeat 1 83 0 311 111 0 0 chr3 83835648 83835693 -143688885 + Alu SINE Alu 253 297 -5 2639 45 0 13 chr3 83835858 83836169 -143688409 + AluY SINE Alu 1 307 -4 622 155 10 10 chr3 83836454 83836557 -143688021 - AluSg/x SINE Alu -16 296 194 273 244 34 128 chr3 83837258 83837524 -143687054 - MLT1K LTR MaLR -25 563 323 332 290 0 10 chr3 83838000 83838100 -143686478 + L1ME LINE L1 5707 5805 -316 1721 148 0 4 chr3 83838280 83838579 -143685999 - AluJo SINE Alu 0 323 26 367 280 0 10 chr3 83838804 83838904 -143685674 - MIR SINE MIR -104 158 60 410 213 0 19 chr3 83839139 83839247 -143685331 - MIR3 SINE MIR -32 176 71 953 264 35 17 chr3 83839884 83840251 -143684327 + LTR16C LTR ERVL 76 489 -2 2176 102 0 20 chr3 83840364 83840658 -143683920 - AluSg SINE Alu -22 288 1 2431 117 27 8 chr3 83841366 83841734 -143682844 + THE1C LTR MaLR 1 375 0 273 274 247 7 chr3 83843332 83843478 -143681100 + MIR SINE MIR 61 241 -21 498 256 75 94 chr3 83843591 83843857 -143680721 + MLT1K LTR MaLR 67 327 -261 2125 284 33 22 chr3 83843888 83844526 -143680052 - MLT2F LTR ERVL 0 663 19 420 189 19 57 chr3 83844566 83844672 -143679906 + MLT1K LTR MaLR 410 511 -77 524 91 0 0 chr3 83844707 83844784 -143679794 - Alu SINE Alu -4 306 230 321 301 53 0 chr3 83845851 83845964 -143678614 - L3 LINE CR1 -547 1030 912 189 0 0 0 chr3 83846100 83846121 -143678457 + (A)n Simple_repeat Simple_repeat 1 21 0 424 324 95 0 chr3 83846201 83846423 -143678155 + L2 LINE L2 2529 2771 -543 1340 201 81 92 chr3 83846423 83846642 -143677936 + Tigger2a DNA MER2_type 1 214 -2494 1652 192 3 0 chr3 83846642 83846954 -143677624 - AluSp SINE Alu 0 313 1 1340 201 81 92 chr3 83846954 83847167 -143677411 + Tigger2a DNA MER2_type 214 428 -6 2533 80 3 0 chr3 83847282 83847594 -143676984 - AluSp SINE Alu 0 313 1 1120 175 94 5 chr3 83847594 83847809 -143676769 + Tigger2 DNA MER2_type 2477 2714 -4 255 223 50 79 chr3 83848074 83848213 -143676365 + L2 LINE L2 3083 3217 -96 498 188 131 38 chr3 83848248 83848408 -143676170 + LTR33 LTR ERVL 341 515 -6 182 301 129 0 chr3 83849565 83849658 -143674920 - L2 LINE L2 -10 3303 3199 * 765 209 117 5 chr3 83849650 83849856 -143674722 - MIR SINE MIR -21 241 13 1820 155 24 111 chr3 83849857 83850173 -143674405 - MLT2D LTR ERVL -2 412 145 2057 132 3 7 chr3 83850173 83850483 -143674095 + AluSx SINE Alu 2 310 -2 1820 155 24 111 chr3 83850483 83850617 -143673961 - MLT2D LTR ERVL -269 145 1 1305 196 114 88 chr3 83850622 83851077 -143673501 + MLT1C LTR MaLR 1 467 0 666 259 37 32 chr3 83851246 83851462 -143673116 - MLT2F LTR ERVL -7 656 440 1758 146 58 4 chr3 83851932 83852207 -143672371 - AluJb SINE Alu -22 290 1 423 270 45 0 chr3 83852590 83852701 -143671877 - L2 LINE L2 -2 3270 3155 196 341 0 24 chr3 83852781 83852866 -143671712 + MIR SINE MIR 40 122 -140 286 248 118 39 chr3 83852889 83853042 -143671536 - MIR SINE MIR -3 259 95 272 178 22 33 chr3 83853587 83853677 -143670901 + GA-rich Low_complexity Low_complexity 3 91 0 264 167 260 0 chr3 83854020 83854116 -143670462 + MER5C DNA MER1_type 2 122 -202 413 255 26 10 chr3 83854317 83854479 -143670099 + MIR SINE MIR 98 261 -1 204 329 27 0 chr3 83855557 83855630 -143668948 + GA-rich Low_complexity Low_complexity 5 79 0 1683 154 56 131 chr3 83856886 83857353 -143667225 + MSTB1 LTR MaLR 1 432 0 379 300 0 0 chr3 83857412 83857522 -143667056 + MER34 LTR ERV1 1 110 -432 2444 178 111 18 chr3 83857522 83857645 -143666933 + L1M4 LINE L1 4728 4838 -1346 1830 153 3 34 chr3 83857645 83857939 -143666639 - AluJb SINE Alu -27 285 1 2444 178 111 18 chr3 83857939 83858551 -143666027 + L1M4 LINE L1 4838 5515 -669 3877 126 0 6 chr3 83859127 83859657 -143664921 - MER1A DNA MER1_type 0 527 1 331 222 9 9 chr3 83859754 83859862 -143664716 + GA-rich Low_complexity Low_complexity 2 109 0 519 195 60 60 chr3 83910008 83910157 -143614421 - MLT2F LTR ERVL -514 149 1 1621 216 24 18 chr3 83910165 83910503 -143614075 - MLT1F1 LTR MaLR -222 345 6 385 331 51 22 chr3 83910701 83910847 -143613731 - L2 LINE L2 -509 2805 2655 184 312 152 24 chr3 83910847 83910972 -143613606 + MIR3 SINE MIR 3 143 -65 399 218 241 15 chr3 83911353 83911486 -143613092 + MLT1K LTR MaLR 416 578 -10 204 333 31 21 chr3 83913669 83913765 -143610813 - MIR SINE MIR -108 154 58 185 239 11 102 chr3 83913937 83914025 -143610553 + MIR SINE MIR 183 262 0 979 212 94 97 chr3 83914122 83914243 -143610335 - MER31B LTR ERV1 -11 455 335 1175 204 83 56 chr3 83914243 83914675 -143609903 - LTR56 LTR ERV1 -1 444 1 979 212 94 97 chr3 83914675 83914893 -143609685 - MER31B LTR ERV1 -131 335 117 341 25 0 0 chr3 83914893 83914933 -143609645 - MLT2A1 LTR ERVL 0 444 405 522 0 0 0 chr3 83914933 83914991 -143609587 + (TA)n Simple_repeat Simple_repeat 2 59 0 573 201 146 43 chr3 83915099 83915263 -143609315 - MER21B LTR ERV1 -395 468 288 1004 190 14 51 chr3 83915265 83915481 -143609097 - MER21B LTR ERV1 -529 334 127 1449 157 82 54 chr3 83915688 83916089 -143608489 - MER39 LTR ERV1 -269 438 1 306 267 35 111 chr3 83916090 83916186 -143608392 - L2 LINE L2 -254 3059 2980 1102 159 26 86 chr3 83916186 83916419 -143608159 + MER20 DNA MER1_type 1 219 0 306 267 35 111 chr3 83916419 83916494 -143608084 - L2 LINE L2 -333 2980 2901 1004 85 0 0 chr3 83916664 83916794 -143607784 + AluSq/x SINE Alu 1 130 -182 384 280 147 14 chr3 83916818 83917036 -143607542 - LTR52 LTR ERVL -108 313 67 601 161 15 23 chr3 83917066 83917196 -143607382 + SVA Other Other 475 603 -783 600 191 89 34 chr3 83917301 83917510 -143607068 - MER106B DNA MER1_type -25 1034 1 2083 194 137 21 chr3 83917523 83917992 -143606586 + MLT1F LTR MaLR 18 540 -2 788 128 64 0 chr3 83918033 83918158 -143606420 + FLAM_C SINE Alu 1 133 0 235 70 23 23 chr3 83918168 83918211 -143606367 + (GAAA)n Simple_repeat Simple_repeat 2 44 0 1744 183 17 52 chr3 83918443 83918792 -143605786 + MER21B LTR ERV1 450 786 -77 1773 132 7 11 chr3 83918881 83919161 -143605417 + MER39 LTR ERV1 429 707 0 401 272 25 68 chr3 83919177 83919339 -143605239 + L2 LINE L2 3158 3312 -1 24 32 0 0 chr3 83919379 83919410 -143605168 + AT_rich Low_complexity Low_complexity 1 31 0 226 295 105 19 chr3 83920225 83920330 -143604248 - L3b LINE CR1 -158 1425 1312 640 252 74 99 chr3 83920639 83921195 -143603383 + MER34 LTR ERV1 1 542 0 243 240 20 0 chr3 83921227 83921277 -143603301 + Charlie8 DNA MER1_type 33 83 -2334 229 170 0 38 chr3 83921457 83921510 -143603068 + MLT2F LTR ERVL 613 663 0 * 1173 202 4 26 chr3 83921510 83921742 -143602836 + MLT1F LTR MaLR 316 542 0 349 271 21 49 chr3 83921815 83921959 -143602619 + L2 LINE L2 3118 3257 -56 613 304 58 11 chr3 83921966 83922157 -143602421 + MIR SINE MIR 61 260 -2 208 329 79 0 chr3 83922388 83922464 -143602114 - L2 LINE L2 -10 3262 3181 1031 179 80 31 chr3 83922875 83923099 -143601479 + MIR SINE MIR 2 236 -26 752 293 32 35 chr3 83923110 83923421 -143601157 - MLT1I LTR MaLR 0 409 100 538 274 37 53 chr3 83923663 83923853 -143600725 - MER20B DNA MER1_type -595 188 2 2171 101 13 0 chr3 83923985 83924283 -143600295 + AluSx SINE Alu 1 302 -10 367 154 0 0 chr3 83924288 83924340 -143600238 + Alu SINE Alu 1 52 -250 403 281 36 29 chr3 83924340 83924479 -143600099 + MIR SINE MIR 53 192 -70 1493 153 43 0 chr3 83924479 83924734 -143599844 + AluJb SINE Alu 1 266 -46 253 246 29 0 chr3 83924848 83924917 -143599661 + MLT1K LTR MaLR 512 582 -6 23 0 0 0 chr3 83924948 83924971 -143599607 + AT_rich Low_complexity Low_complexity 1 23 0 426 294 44 33 chr3 83925465 83925645 -143598933 + MER5A DNA MER1_type 2 183 -6 192 302 19 0 chr3 83925673 83925726 -143598852 + MIR SINE MIR 48 101 -161 1116 151 44 5 chr3 83925795 83926000 -143598578 - AluJb SINE Alu -14 298 86 1984 117 3 7 chr3 83926032 83926323 -143598255 - AluSx SINE Alu -22 290 1 239 241 17 0 chr3 83926371 83926429 -143598149 + MER117 DNA MER1_type 1 59 -138 3130 141 14 16 chr3 83926453 83926949 -143597629 + Tigger7 DNA MER2_type 28 522 -1965 384 244 12 0 chr3 83926953 83927039 -143597539 + Tigger7 DNA MER2_type 2405 2491 0 498 273 107 48 chr3 83927127 83927398 -143597180 + L2 LINE L2 3027 3313 0 448 138 11 11 chr3 83927569 83927663 -143596915 + GA-rich Low_complexity Low_complexity 2 95 0 214 259 74 143 chr3 83928083 83928216 -143596362 + MIR SINE MIR 62 176 -86 821 233 104 0 chr3 83928216 83928259 -143596319 - MER20 DNA MER1_type -4 215 178 456 19 0 0 chr3 83928259 83928312 -143596266 + (TG)n Simple_repeat Simple_repeat 2 54 0 821 233 104 0 chr3 83928312 83928461 -143596117 - MER20 DNA MER1_type -41 178 3 214 259 74 143 chr3 83928461 83928543 -143596035 + MIR SINE MIR 176 262 0 372 273 67 51 chr3 83928605 83928782 -143595796 - MIR SINE MIR 0 262 15 2120 247 84 4 chr3 83928782 83929329 -143595249 - MLT1E LTR MaLR 0 593 3 372 273 67 51 chr3 83929329 83929344 -143595234 - MIR SINE MIR -247 15 2 1193 223 74 30 chr3 83929437 83929625 -143594953 - MLT1A2 LTR MaLR 0 374 167 342 0 0 0 chr3 83929625 83929663 -143594915 + (GA)n Simple_repeat Simple_repeat 2 39 0 1193 223 74 30 chr3 83929663 83929770 -143594808 - MLT1A2 LTR MaLR -207 167 66 415 213 11 32 chr3 83929822 83929916 -143594662 + L1MC4 LINE L1 6614 6705 -1337 309 219 10 73 chr3 83929949 83930045 -143594533 + L1MC4 LINE L1 6614 6703 -1339 324 196 33 54 chr3 83930050 83930142 -143594436 + L1MC4 LINE L1 6614 6703 -1339 305 233 11 67 chr3 83930145 83930235 -143594343 + L1MC4 LINE L1 6616 6700 -1342 261 54 0 0 chr3 83930260 83930278 -143594300 + (TA)n Simple_repeat Simple_repeat 1 18 -19 180 0 0 0 chr3 83930278 83930298 -143594280 + (GA)n Simple_repeat Simple_repeat 2 21 0 261 54 0 0 chr3 83930298 83930316 -143594262 + (TA)n Simple_repeat Simple_repeat 17 37 0 1719 176 0 3 chr3 83930316 83930600 -143593978 - AluJb SINE Alu -29 283 1 199 341 71 0 chr3 83930608 83930693 -143593885 + L2 LINE L2 3181 3271 -1 233 284 25 12 chr3 83930866 83930947 -143593631 + MIR SINE MIR 104 185 -77 1311 256 32 13 chr3 83931247 83931679 -143592899 - LTR16C LTR ERVL 0 491 3 234 123 14 41 chr3 83932176 83932249 -143592329 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 2077 124 56 34 chr3 83932270 83932626 -143591952 - THE1B LTR MaLR 0 364 1 12480 72 14 0 chr3 83932626 83934185 -143590393 - THE1B-int LTR MaLR 0 1580 1 2164 125 51 34 chr3 83934185 83934538 -143590040 - THE1B LTR MaLR 0 364 6 855 32 24 0 chr3 83934538 83934661 -143589917 + (TCTA)n Simple_repeat Simple_repeat 1 126 0 180 182 0 0 chr3 83935318 83935362 -143589216 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 2313 89 0 0 chr3 83935480 83935782 -143588796 - AluY SINE Alu -4 307 6 496 115 257 26 chr3 83935894 83936007 -143588571 + MER4C LTR ERV1 306 444 -21 5015 122 21 13 chr3 83936034 83936807 -143587771 + MER4E LTR ERV1 1 779 0 1536 146 8 23 chr3 83936808 83937068 -143587510 + MLT1B LTR MaLR 135 390 0 3189 102 0 0 chr3 83937373 83937803 -143586775 - MER41A LTR ERV1 0 554 125 2784 71 106 5 chr3 83937803 83938210 -143586368 + LTR7 LTR ERV1 1 448 -2 9424 92 42 53 chr3 83938212 83940114 -143584464 + HERVH LTR ERV1 1 2039 -5674 813 255 0 10 chr3 83940261 83940453 -143584125 - MER91B DNA MER1_type 0 190 1 253 337 0 12 chr3 83940583 83940669 -143583909 + L2 LINE L2 3174 3258 -14 186 329 24 12 chr3 83940853 83940938 -143583640 + L2 LINE L2 3188 3273 -40 232 360 0 11 chr3 83942635 83942724 -143581854 - MLT1J2 LTR MaLR -18 432 345 489 260 45 0 chr3 83943149 83943303 -143581275 - MER103 DNA DNA -2 164 4 216 250 10 120 chr3 83943437 83943537 -143581041 - MIR SINE MIR -85 123 35 267 132 0 0 chr3 83943688 83943726 -143580852 + MIR SINE MIR 113 150 -112 231 319 143 42 chr3 83943778 83943994 -143580584 - L2 LINE L2 -81 3232 2995 228 220 20 0 chr3 83944017 83944067 -143580511 + L2 LINE L2 3251 3301 -12 183 80 0 0 chr3 83944068 83944093 -143580485 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 645 202 214 22 chr3 83944263 83944441 -143580137 - MER20 DNA MER1_type -7 212 1 250 212 18 35 chr3 83945098 83945211 -143579367 + (TTATA)n Simple_repeat Simple_repeat 2 112 0 261 104 7 96 chr3 83945211 83945346 -143579232 + (TATAA)n Simple_repeat Simple_repeat 5 127 0 3635 108 0 8 chr3 83945453 83945989 -143578589 + HERVH LTR ERV1 2456 2987 -4726 * 6377 75 7 2 chr3 83945983 83946833 -143577745 + HERVH LTR ERV1 3140 3993 -3720 4466 143 0 1 chr3 83946835 83947498 -143577080 + HERVH LTR ERV1 4488 5149 -2564 1369 114 43 0 chr3 83947499 83947710 -143576868 + HERVH LTR ERV1 5600 5819 -1894 * 2376 111 45 13 chr3 83947708 83948088 -143576490 + HERVH LTR ERV1 7322 7713 0 2939 64 94 5 chr3 83948088 83948494 -143576084 + LTR7 LTR ERV1 1 442 -8 867 102 16 0 chr3 83948502 83948629 -143575949 - MER41B LTR ERV1 -506 129 1 499 234 46 36 chr3 83948744 83948974 -143575604 + MER106B DNA MER1_type 3 1059 0 2142 122 3 0 chr3 83949092 83949396 -143575182 + AluSx SINE Alu 1 305 -7 763 137 0 69 chr3 83949544 83949675 -143574903 - AluJb SINE Alu -13 299 178 826 258 89 28 chr3 83949906 83950294 -143574284 - MLT1G1 LTR MaLR 0 595 97 712 315 46 23 chr3 83950303 83950654 -143573924 - L2 LINE L2 -223 3049 2697 1147 147 17 0 chr3 83950668 83950845 -143573733 - MLT1B LTR MaLR 0 390 211 2197 119 51 23 chr3 83951035 83951389 -143573189 - THE1B LTR MaLR 0 364 1 1950 188 185 19 chr3 83951735 83952215 -143572363 + MLT1F1 LTR MaLR 3 562 -5 213 308 68 68 chr3 83952389 83952506 -143572072 - MIR3 SINE MIR -3 205 89 390 104 60 0 chr3 83952962 83953029 -143571549 + MADE1 DNA Mariner 10 80 0 498 284 8 63 chr3 83953308 83953547 -143571031 + L2 LINE L2 2827 3052 -220 1349 239 32 42 chr3 83953572 83953973 -143570605 + MLT2C1 LTR ERVL 1 397 0 444 161 12 0 chr3 83954052 83954133 -143570445 - MER53 DNA DNA -84 105 24 3399 99 32 15 chr3 83954149 83954623 -143569955 + MER1A DNA MER1_type 46 527 -2 384 307 53 37 chr3 83954645 83954677 -143569901 + L2 LINE L2 3122 3152 -161 1659 122 80 8 chr3 83954677 83954960 -143569618 - AluSx SINE Alu 0 302 1 384 307 53 37 chr3 83954960 83955115 -143569463 + L2 LINE L2 3152 3313 0 1069 312 60 36 chr3 83955133 83955684 -143568894 + Tigger8 DNA MER2_type 40 603 -63 220 227 0 0 chr3 83955713 83955757 -143568821 + L2 LINE L2 3007 3050 -222 408 290 120 25 chr3 83955983 83956183 -143568395 + MIR SINE MIR 2 220 -42 402 284 11 0 chr3 83956427 83956515 -143568063 + MER5A DNA MER1_type 21 109 -80 2969 105 67 76 chr3 83956600 83956718 -143567860 + Tigger3b DNA MER2_type 48 166 -2862 2123 119 72 23 chr3 83956718 83957063 -143567515 + THE1B LTR MaLR 1 362 -2 2969 105 67 76 chr3 83957063 83957435 -143567143 + Tigger3b DNA MER2_type 166 540 -2488 2219 97 3 0 chr3 83957435 83957734 -143566844 - AluSc SINE Alu -9 300 1 1965 151 3 0 chr3 83957742 83958053 -143566525 - AluSx SINE Alu 0 312 1 2969 105 67 76 chr3 83958053 83958134 -143566444 + Tigger3b DNA MER2_type 547 624 -607 868 143 0 0 chr3 83958149 83958282 -143566296 - AluSq/x SINE Alu -179 133 1 3311 146 66 20 chr3 83958282 83958870 -143565708 + Tigger3b DNA MER2_type 617 1231 0 205 250 19 0 chr3 83959613 83959665 -143564913 - MIR3 SINE MIR -5 203 151 377 136 0 12 chr3 83959684 83959765 -143564813 + (TCCA)n Simple_repeat Simple_repeat 1 80 0 358 325 25 17 chr3 83959769 83959889 -143564689 - L2 LINE L2 -1 3271 3151 665 229 46 23 chr3 83960089 83960264 -143564314 - MIR SINE MIR -38 224 46 2134 244 100 64 chr3 83960322 83960576 -143564002 + MER45C DNA AcHobo 2 245 -1336 195 42 0 0 chr3 83960576 83960600 -143563978 + (TC)n Simple_repeat Simple_repeat 2 25 0 2134 244 100 64 chr3 83960600 83961262 -143563316 + MER45C DNA AcHobo 245 951 -2 519 262 117 14 chr3 83961517 83961662 -143562916 - MIR SINE MIR -11 251 92 1199 149 71 78 chr3 83962641 83962705 -143561873 - MER33 DNA MER1_type -2278 307 244 2242 102 0 6 chr3 83962705 83963020 -143561558 + AluSq SINE Alu 1 313 0 1199 149 71 78 chr3 83963020 83963264 -143561314 - MER33 DNA MER1_type -2341 244 1 339 269 209 15 chr3 83963417 83963551 -143561027 + MER5A DNA MER1_type 30 189 0 357 305 147 0 chr3 83963777 83963967 -143560611 - MIR SINE MIR -8 254 37 2489 99 28 25 chr3 83964039 83964402 -143560176 - THE1B LTR MaLR 0 364 1 1283 76 0 0 chr3 83964748 83964906 -143559672 - MER9 LTR ERVK -353 158 1 729 133 0 0 chr3 83964906 83965011 -143559567 - AluJb SINE Alu -204 108 4 333 256 180 38 chr3 83965112 83965323 -143559255 + MLT1L LTR MaLR 226 466 -149 277 368 0 38 chr3 83965434 83965540 -143559038 + MIR SINE MIR 18 119 -89 987 258 71 43 chr3 83965577 83966145 -143558433 + MLT2E LTR ERVL 10 628 0 195 283 0 0 chr3 83966145 83966198 -143558380 + MIR SINE MIR 180 232 -30 567 281 7 20 chr3 83966256 83966409 -143558169 - MIR3 SINE MIR -38 170 20 300 270 72 18 chr3 83966463 83966574 -143558004 - MLT1L LTR MaLR -7 608 492 322 283 112 62 chr3 83966616 83966892 -143557686 - MLT1K LTR MaLR -172 416 127 222 37 0 0 chr3 83966949 83966976 -143557602 + (TGGGGG)n Simple_repeat Simple_repeat 1 27 0 3034 133 25 38 chr3 83967486 83967817 -143556761 - MER34C LTR ERV1 0 585 262 1839 145 0 20 chr3 83967817 83968113 -143556465 + AluJb SINE Alu 1 290 -22 3034 133 25 38 chr3 83968113 83968337 -143556241 - MER34C LTR ERV1 -323 262 37 2493 223 35 12 chr3 83968341 83968947 -143555631 - L1ME2 LINE L1 -17 6147 5528 370 281 30 7 chr3 83969108 83969243 -143555335 + LTR33 LTR ERVL 15 152 -369 1086 291 50 38 chr3 83969522 83969945 -143554633 + LTR33A LTR ERVL 96 523 0 1233 276 121 31 chr3 83970491 83971012 -143553566 - MLT1K LTR MaLR -19 569 2 218 318 68 0 chr3 83971025 83971113 -143553465 - L2 LINE L2 -37 3276 3183 437 136 97 10 chr3 83971516 83971619 -143552959 - L1MD2 LINE L1 -1 6358 6247 440 163 12 0 chr3 83971746 83971832 -143552746 + CT-rich Low_complexity Low_complexity 3 89 0 654 271 109 14 chr3 83971995 83972216 -143552362 - MER31B LTR ERV1 -108 358 117 368 73 0 0 chr3 83972216 83972271 -143552307 - MLT2A1 LTR ERVL 0 444 390 387 0 0 0 chr3 83972271 83972314 -143552264 + (TA)n Simple_repeat Simple_repeat 1 43 0 3152 74 0 36 chr3 83972360 83972560 -143552018 - MLT2A1 LTR ERVL -40 404 225 2239 74 40 0 chr3 83972560 83972859 -143551719 - AluY SINE Alu 0 311 1 3152 74 0 36 chr3 83972859 83973077 -143551501 - MLT2A1 LTR ERVL -219 225 1 21198 59 23 2 chr3 83973077 83975664 -143548914 - HERVL-A1 LTR ERVL 0 5654 3014 1665 138 7 14 chr3 83975716 83975991 -143548587 + AluSx SINE Alu 22 294 -18 472 131 36 12 chr3 83976000 83976084 -143548494 - MER31B LTR ERV1 -380 86 1 245 219 84 67 chr3 83976458 83976577 -143548001 + LTR16A1 LTR ERVL 337 457 0 465 197 0 10 chr3 83977084 83977102 -143547476 + L1MC/D LINE L1 5350 5367 -787 2151 101 17 0 chr3 83977102 83977399 -143547179 + AluSx SINE Alu 5 306 -6 465 197 0 10 chr3 83977399 83977484 -143547094 + L1MC/D LINE L1 5367 5447 -707 219 114 0 0 chr3 83977484 83977519 -143547059 + (A)n Simple_repeat Simple_repeat 1 35 0 582 272 92 18 chr3 83977676 83977893 -143546685 - MIR SINE MIR -22 240 8 239 244 269 0 chr3 83977948 83978026 -143546552 + LTR16C LTR ERVL 97 195 -296 616 236 81 0 chr3 83978123 83978271 -143546307 + LTR16C LTR ERVL 316 475 -16 378 61 0 0 chr3 83978349 83978398 -143546180 + (CA)n Simple_repeat Simple_repeat 2 50 0 2065 130 0 0 chr3 83978518 83978817 -143545761 - AluSx SINE Alu -8 304 6 1189 218 162 27 chr3 83979413 83979858 -143544720 + MLT1D LTR MaLR 1 505 0 532 304 18 68 chr3 83979922 83979971 -143544607 - MIR SINE MIR -44 218 168 768 235 0 19 chr3 83979971 83980133 -143544445 - FRAM SINE Alu -7 159 1 532 304 18 68 chr3 83980133 83980303 -143544275 - MIR SINE MIR -94 168 10 326 247 24 0 chr3 83980625 83980710 -143543868 + LTR67 LTR ERVL 471 557 0 1576 191 13 10 chr3 83981097 83981395 -143543183 + AluJb SINE Alu 1 299 -13 235 338 46 46 chr3 83982065 83982216 -143542362 + LTR16C LTR ERVL 341 491 0 21 36 0 0 chr3 83982270 83982298 -143542280 + AT_rich Low_complexity Low_complexity 1 28 0 1030 256 12 20 chr3 83982484 83982734 -143541844 - MIR SINE MIR -4 258 11 271 372 54 7 chr3 83983659 83983807 -143540771 + MIR3 SINE MIR 6 160 -48 1532 170 3 47 chr3 83983933 83984250 -143540328 + AluJo SINE Alu 2 304 -8 856 234 57 51 chr3 83984537 83984660 -143539918 + MER46C DNA MER2_type 3 124 -214 636 178 305 17 chr3 83984660 83984834 -143539744 - MER58A DNA MER1_type 0 224 1 856 234 57 51 chr3 83984834 83984927 -143539651 + MER46C DNA MER2_type 124 215 -123 2028 174 64 80 chr3 83984927 83985440 -143539138 + MLT1D LTR MaLR 1 505 0 856 234 57 51 chr3 83985440 83985556 -143539022 + MER46C DNA MER2_type 215 338 0 300 317 29 10 chr3 83985556 83985660 -143538918 + MIR SINE MIR 78 183 -79 415 209 26 9 chr3 83985993 83986108 -143538470 + LTR33 LTR ERVL 402 518 -3 299 298 161 78 chr3 83986111 83986353 -143538225 - MIR SINE MIR 0 262 1 400 261 27 9 chr3 83987077 83987188 -143537390 - LTR67 LTR ERVL 0 557 445 809 232 129 37 chr3 83987613 83987885 -143536693 + LTR16C LTR ERVL 193 489 -2 2228 224 78 8 chr3 83988143 83988643 -143535935 - MLT1F LTR MaLR 0 542 8 307 317 108 32 chr3 83989639 83989888 -143534690 + L2 LINE L2 2397 2664 -650 1578 209 66 49 chr3 83989941 83990352 -143534226 - MLT1J LTR MaLR -89 422 5 1683 301 63 39 chr3 83990403 83991115 -143533463 - L2 LINE L2 -492 2822 2094 188 138 0 0 chr3 83991132 83991161 -143533417 + MIR SINE MIR 119 147 -115 496 328 77 28 chr3 83991625 83991872 -143532706 - MIR SINE MIR -3 259 1 1319 194 44 3 chr3 83991905 83992359 -143532219 - MLT1D LTR MaLR -2 503 1 221 331 80 49 chr3 83992758 83993045 -143531533 + L2 LINE L2 2811 3106 -166 562 297 81 68 chr3 83993060 83993542 -143531036 - MLT1K LTR MaLR -31 557 70 237 108 27 0 chr3 83993816 83993853 -143530725 - MLT1D LTR MaLR 0 505 468 4805 157 22 29 chr3 83993853 83994842 -143529736 - MER11C LTR ERVK 0 1071 1 2405 156 68 27 chr3 83994843 83995285 -143529293 - MLT1D LTR MaLR -33 472 13 22 0 0 0 chr3 83995285 83995307 -143529271 + AT_rich Low_complexity Low_complexity 1 22 0 783 147 9 0 chr3 83995307 83995423 -143529155 - FLAM_C SINE Alu -16 117 1 1173 244 74 136 chr3 83995453 83996100 -143528478 - MLT1D-int LTR MaLR -4 1367 761 878 218 26 21 chr3 83996103 83996296 -143528282 + MER58A DNA MER1_type 25 218 -6 342 115 0 0 chr3 83997731 83997783 -143526795 + (CA)n Simple_repeat Simple_repeat 2 53 0 347 258 118 28 chr3 83998517 83998695 -143525883 - MLT1K LTR MaLR -2 586 393 244 173 19 39 chr3 83998695 83998747 -143525831 + CT-rich Low_complexity Low_complexity 1 51 0 3249 115 8 78 chr3 83998945 83999560 -143525018 - MER4B LTR ERV1 -36 574 3 1685 168 34 0 chr3 83999747 84000044 -143524534 + AluSx SINE Alu 2 308 -4 249 109 0 0 chr3 84000170 84000216 -143524362 + (A)n Simple_repeat Simple_repeat 1 46 0 862 204 23 23 chr3 84000687 84000859 -143523719 + MER5A DNA MER1_type 8 179 -10 482 298 37 50 chr3 84001064 84001120 -143523458 - MIR SINE MIR -13 249 194 1446 238 33 11 chr3 84001120 84001319 -143523259 - MLT1A2 LTR MaLR 0 374 162 216 0 0 0 chr3 84001319 84001343 -143523235 + (TC)n Simple_repeat Simple_repeat 2 25 0 1446 238 33 11 chr3 84001343 84001509 -143523069 - MLT1A2 LTR MaLR -212 162 1 482 298 37 50 chr3 84001509 84001670 -143522908 - MIR SINE MIR -68 194 35 219 175 25 0 chr3 84001868 84001908 -143522670 + CT-rich Low_complexity Low_complexity 4 44 0 233 310 0 0 chr3 84002235 84002306 -143522272 + T-rich Low_complexity Low_complexity 1 71 0 928 173 32 11 chr3 84002428 84002613 -143521965 - MER5A DNA MER1_type 0 189 1 854 284 125 37 chr3 84002668 84002965 -143521613 - MLT1L LTR MaLR 0 615 261 2066 122 7 0 chr3 84002965 84003259 -143521319 - AluSx SINE Alu -16 296 1 854 284 125 37 chr3 84003259 84003425 -143521153 - MLT1L LTR MaLR -354 261 111 251 258 34 11 chr3 84004212 84004301 -143520277 + MLT1K LTR MaLR 2 92 -496 239 358 176 23 chr3 84004547 84004604 -143519974 - L2 LINE L2 -8 3264 3217 1706 171 98 62 chr3 84004604 84005054 -143519524 - MLT1C LTR MaLR 0 467 2 239 358 176 23 chr3 84005054 84005298 -143519280 - L2 LINE L2 -55 3217 2917 304 266 53 65 chr3 84005458 84005627 -143518951 - LTR16A1 LTR ERVL -290 167 1 222 329 29 7 chr3 84005636 84005773 -143518805 - L2 LINE L2 -997 2317 2178 721 333 8 4 chr3 84006069 84006303 -143518275 + MIR SINE MIR 15 249 -13 860 278 94 17 chr3 84006389 84006623 -143517955 + MIR SINE MIR 10 261 -1 513 308 137 47 chr3 84007366 84007818 -143516760 + L2 LINE L2 2821 3313 0 187 273 36 0 chr3 84007838 84007893 -143516685 + MIR SINE MIR 66 122 -140 922 179 80 40 chr3 84008957 84009158 -143515420 + MER3 DNA MER1_type 1 209 0 1898 100 4 0 chr3 84009216 84009476 -143515102 - AluSp SINE Alu -6 307 47 2335 82 3 36 chr3 84009553 84009883 -143514695 + L1PA8A LINE L1 5812 6130 -1 458 216 29 10 chr3 84009908 84010010 -143514568 - MER5A DNA MER1_type -77 112 9 817 172 19 13 chr3 84010029 84010186 -143514392 - MER5B DNA MER1_type -3 175 18 562 297 19 0 chr3 84010584 84010739 -143513839 + MIR SINE MIR 28 185 -77 183 286 52 105 chr3 84010818 84010846 -143513732 + L2 LINE L2 2866 2894 -378 2243 100 0 6 chr3 84010846 84011157 -143513421 - AluY SINE Alu -2 309 1 183 286 52 105 chr3 84011157 84011338 -143513240 + L2 LINE L2 2894 3064 -208 602 248 203 69 chr3 84011367 84011702 -143512876 - L2 LINE L2 -1 3312 2933 241 213 223 53 chr3 84011766 84011860 -143512718 + L2 LINE L2 3200 3309 -4 536 247 18 18 chr3 84012527 84012693 -143511885 - LTR33 LTR ERVL -55 466 301 756 220 148 28 chr3 84013203 84013521 -143511057 - LTR16A LTR ERVL -5 445 90 264 200 18 0 chr3 84013665 84013720 -143510858 - LTR33 LTR ERVL -440 81 26 477 296 8 0 chr3 84014059 84014191 -143510387 - MIR SINE MIR -105 157 25 509 273 81 20 chr3 84014849 84015047 -143509531 - Charlie8 DNA MER1_type -2186 231 22 546 326 77 18 chr3 84015654 84015875 -143508703 + MIR SINE MIR 21 254 -8 214 294 245 7 chr3 84016177 84016320 -143508258 + L2 LINE L2 3128 3304 -9 487 341 24 19 chr3 84016488 84016696 -143507882 - MIR SINE MIR -7 255 47 1290 267 89 7 chr3 84016696 84017145 -143507433 - LTR16C LTR ERVL -5 486 1 324 120 0 0 chr3 84017217 84017267 -143507311 + (TCCC)n Simple_repeat Simple_repeat 3 52 0 1661 148 57 3 chr3 84017269 84017552 -143507026 - AluSx SINE Alu -14 298 1 2084 88 14 0 chr3 84018034 84018318 -143506260 - AluSx SINE Alu -24 288 1 530 292 62 15 chr3 84018428 84018623 -143505955 + MIR SINE MIR 2 205 -57 1941 111 3 34 chr3 84019196 84019493 -143505085 - AluSx SINE Alu -9 303 16 1801 253 9 14 chr3 84019870 84020305 -143504273 + LTR16A LTR ERVL 16 448 -2 1385 260 128 14 chr3 84020331 84020815 -143503763 - MER34 LTR ERV1 0 542 4 295 343 44 0 chr3 84021133 84021270 -143503308 - MIR3 SINE MIR -28 180 38 930 149 101 48 chr3 84022982 84023067 -143501511 + MER20 DNA MER1_type 1 80 -139 225 0 0 0 chr3 84023067 84023092 -143501486 + (TG)n Simple_repeat Simple_repeat 2 26 0 930 149 101 48 chr3 84023092 84023214 -143501364 + MER20 DNA MER1_type 80 219 0 875 270 0 5 chr3 84023433 84023648 -143500930 - LTR16C LTR ERVL -11 480 267 1556 123 0 0 chr3 84024237 84024464 -143500114 + AluSg/x SINE Alu 84 310 0 2464 143 21 35 chr3 84024515 84024862 -143499716 - MSTB LTR MaLR 0 426 85 1975 129 77 34 chr3 84024862 84025211 -143499367 - THE1B LTR MaLR 0 364 1 2464 143 21 35 chr3 84025211 84025295 -143499283 - MSTB LTR MaLR -341 85 1 255 286 0 0 chr3 84025295 84025351 -143499227 - MER5A DNA MER1_type -104 85 30 458 304 26 0 chr3 84025873 84025988 -143498590 - L2 LINE L2 0 3313 3196 1160 154 39 0 chr3 84025989 84026171 -143498407 + MER72 LTR ERV1 1 189 -533 939 88 184 0 chr3 84026173 84026320 -143498258 + L1PA8 LINE L1 5995 6168 -4 651 277 0 11 chr3 84026319 84026507 -143498071 - L1M1 LINE L1 -4438 3127 2942 * 858 230 148 30 chr3 84026515 84026845 -143497733 - L1MA9 LINE L1 -30 6282 5914 1522 214 160 10 chr3 84026863 84027281 -143497297 + MER49 LTR ERV1 174 880 -42 348 255 78 0 chr3 84027287 84027389 -143497189 - L2 LINE L2 -203 3110 3001 300 149 44 123 chr3 84027959 84028073 -143496505 + LTR37A LTR ERV1 59 163 -263 1029 128 67 0 chr3 84028109 84028273 -143496305 - MER34C LTR ERV1 0 585 411 738 184 153 78 chr3 84028621 84028823 -143495755 - LTR37A LTR ERV1 -1 425 189 2654 161 50 41 chr3 84028823 84029383 -143495195 + MER34B LTR ERV1 1 565 0 738 184 153 78 chr3 84029383 84029501 -143495077 - LTR37A LTR ERV1 -237 189 81 722 217 189 14 chr3 84029708 84030099 -143494479 + LTR33 LTR ERVL 2 521 0 980 83 0 0 chr3 84030110 84030242 -143494336 - AluSg/x SINE Alu -5 305 174 545 208 115 80 chr3 84030465 84030801 -143493777 + MER34 LTR ERV1 220 538 -4 2015 228 152 0 chr3 84031500 84031973 -143492605 + MLT1H1 LTR MaLR 11 555 0 2044 139 0 0 chr3 84032488 84032797 -143491781 + AluSx SINE Alu 1 309 -3 1027 283 97 33 chr3 84033353 84033837 -143490741 + LTR33 LTR ERVL 1 515 -6 1603 205 52 57 chr3 84034095 84034534 -143490044 - MLT2B2 LTR ERVL -4 511 75 432 91 76 0 chr3 84034631 84034697 -143489881 - MLT2B2 LTR ERVL -483 71 1 375 310 165 10 chr3 84034697 84034897 -143489681 + MIR SINE MIR 6 236 -26 1772 171 0 16 chr3 84034899 84035208 -143489370 + AluJb SINE Alu 1 304 -8 342 0 0 0 chr3 84035945 84035983 -143488595 + (CA)n Simple_repeat Simple_repeat 2 39 0 816 249 68 32 chr3 84036542 84036791 -143487787 + MIR SINE MIR 2 259 -3 31 0 0 0 chr3 84036820 84036851 -143487727 + AT_rich Low_complexity Low_complexity 1 31 0 368 275 75 25 chr3 84037128 84037246 -143487332 + MLT1F LTR MaLR 25 148 -419 664 205 49 43 chr3 84037246 84037431 -143487147 + MLT1C LTR MaLR 1 186 -281 357 109 0 0 chr3 84037453 84037499 -143487079 - AluJb SINE Alu -186 116 71 497 204 82 0 chr3 84037599 84037697 -143486881 - AluJb SINE Alu -205 107 2 1377 196 25 18 chr3 84037783 84038063 -143486515 + MLT1C LTR MaLR 183 464 -3 547 229 69 73 chr3 84038125 84038428 -143486150 + MLT1F LTR MaLR 184 505 -50 2548 131 37 47 chr3 84038441 84038470 -143486108 - L1MB2 LINE L1 -3 6168 6140 1749 143 0 98 chr3 84038470 84038805 -143485773 + AluJo SINE Alu 1 302 0 2548 131 37 47 chr3 84038805 84039264 -143485314 - L1MB2 LINE L1 -31 6140 5685 795 241 37 12 chr3 84039357 84039598 -143484980 + LTR16A1 LTR ERVL 211 457 0 304 261 145 29 chr3 84039851 84039989 -143484589 - L1MCa LINE L1 -4361 2065 1912 247 161 32 0 chr3 84039990 84040052 -143484526 + (TA)n Simple_repeat Simple_repeat 2 65 0 267 174 145 0 chr3 84040415 84040484 -143484094 + MIR SINE MIR 62 140 -122 215 79 26 0 chr3 84040692 84040730 -143483848 + (CAA)n Simple_repeat Simple_repeat 3 41 0 444 280 26 107 chr3 84040769 84040932 -143483646 + MIR SINE MIR 7 141 -121 1504 163 0 44 chr3 84040932 84041227 -143483351 + AluJo SINE Alu 1 282 -30 444 280 26 107 chr3 84041227 84041334 -143483244 + MIR SINE MIR 141 255 -7 2217 113 0 0 chr3 84042033 84042343 -143482235 - AluSx SINE Alu -2 310 1 710 252 128 4 chr3 84042407 84042673 -143481905 - LTR16C LTR ERVL -2 489 191 611 279 36 27 chr3 84043295 84043514 -143481064 + MIR SINE MIR 42 262 0 388 314 9 0 chr3 84044707 84044812 -143479766 + L2 LINE L2 3207 3312 -1 781 277 53 40 chr3 84044896 84045196 -143479382 + MLT1E3 LTR MaLR 1 304 -320 1141 228 12 15 chr3 84045222 84045481 -143479097 + MIR SINE MIR 5 262 0 331 239 187 32 chr3 84045518 84045673 -143478905 + MER102b DNA MER1_type 163 341 0 912 98 8 8 chr3 84046675 84046807 -143477771 + AluSq/x SINE Alu 1 132 -181 1210 129 5 21 chr3 84046907 84047101 -143477477 - AluJo SINE Alu -117 195 5 463 300 7 33 chr3 84047602 84047752 -143476826 + MIR SINE MIR 116 261 -1 2338 66 0 0 chr3 84047865 84048153 -143476425 - AluY SINE Alu -21 290 3 802 194 16 78 chr3 84048157 84048194 -143476384 - MER5A DNA MER1_type -6 183 145 711 271 24 0 chr3 84048194 84048364 -143476214 + MER45A DNA AcHobo 1 174 -4 802 194 16 78 chr3 84048364 84048517 -143476061 - MER5A DNA MER1_type -44 145 5 398 297 23 29 chr3 84048529 84048704 -143475874 - MER5B DNA MER1_type -2 176 3 203 295 39 13 chr3 84048810 84048888 -143475690 + MER5B DNA MER1_type 93 172 -6 586 123 0 0 chr3 84049089 84049170 -143475408 + AluJ/FLAM SINE Alu 2 82 -230 465 261 203 0 chr3 84049198 84049351 -143475227 - MER5A DNA MER1_type -2 187 4 28 48 0 0 chr3 84049582 84049624 -143474954 + AT_rich Low_complexity Low_complexity 1 42 0 819 152 0 35 chr3 84049643 84049788 -143474790 - AluJo SINE Alu -171 141 2 285 269 138 28 chr3 84049817 84049962 -143474616 + MIR3 SINE MIR 23 183 -25 2037 117 10 0 chr3 84050157 84050457 -143474121 - AluSx SINE Alu -9 303 1 679 289 64 5 chr3 84052324 84052528 -143472050 + MIR SINE MIR 41 256 -6 638 246 40 48 chr3 84053685 84053904 -143470674 + MIR SINE MIR 47 262 0 189 344 172 0 chr3 84053937 84054030 -143470548 - L2 LINE L2 -5 3267 3159 450 314 31 31 chr3 84054190 84054381 -143470197 - MIR SINE MIR -71 191 1 428 281 18 0 chr3 84054884 84054998 -143469580 + MER20B DNA MER1_type 44 159 -624 787 238 38 110 chr3 84055189 84055534 -143469044 - MLT1B LTR MaLR -1 389 70 599 318 92 43 chr3 84056177 84056545 -143468033 - MLT1K LTR MaLR -7 581 196 1437 273 66 25 chr3 84056646 84057085 -143467493 + LTR16C LTR ERVL 35 491 0 1279 270 95 7 chr3 84057203 84057614 -143466964 - LTR16B LTR ERVL -17 447 1 322 181 24 0 chr3 84057740 84057746 -143466832 + (TATATG)n Simple_repeat Simple_repeat 5 9 -80 1607 172 7 3 chr3 84057746 84058031 -143466547 + AluJo SINE Alu 1 286 -26 322 181 24 0 chr3 84058031 84058107 -143466471 + (TATATG)n Simple_repeat Simple_repeat 9 89 0 955 182 4 136 chr3 84058585 84058843 -143465735 + MER58A DNA MER1_type 1 224 0 388 333 9 9 chr3 84058979 84059090 -143465488 - MIR SINE MIR -132 130 20 2432 154 95 42 chr3 84059159 84059653 -143464925 + MLT2B1 LTR ERVL 1 520 0 671 227 26 7 chr3 84059951 84060105 -143464473 + MIR SINE MIR 96 252 -10 185 283 17 0 chr3 84060370 84060430 -143464148 + L2 LINE L2 2332 2392 -922 294 196 89 0 chr3 84060833 84060889 -143463689 - MER7C DNA MER2_type 0 602 542 2161 166 75 0 chr3 84060889 84061274 -143463304 - MER7C DNA MER2_type -188 414 1 443 305 121 43 chr3 84061709 84062014 -143462564 + MER102b DNA MER1_type 10 338 -3 936 281 8 24 chr3 84062059 84062305 -143462273 + MIR SINE MIR 4 245 -17 185 226 19 38 chr3 84062351 84062404 -143462174 + L2 LINE L2 3261 3312 -1 1662 155 7 27 chr3 84062558 84062855 -143461723 + AluJb SINE Alu 1 291 -21 311 253 126 11 chr3 84063784 84063879 -143460699 + HAL1 LINE L1 1153 1258 -1249 2408 146 62 7 chr3 84064407 84064811 -143459767 - MSTB LTR MaLR 0 426 1 311 256 136 32 chr3 84064860 84064985 -143459593 + MIR SINE MIR 17 154 -108 330 208 360 8 chr3 84064994 84065119 -143459459 - MER5A DNA MER1_type -1 188 20 659 230 5 66 chr3 84065129 84065325 -143459253 + MER58C DNA MER1_type 32 215 0 699 278 92 9 chr3 84065583 84065722 -143458856 + LTR16C LTR ERVL 244 411 -80 639 254 23 74 chr3 84065722 84065885 -143458693 - MER63A DNA MER1_type -1481 207 56 2049 118 24 0 chr3 84065885 84066182 -143458396 - AluSx SINE Alu -8 304 1 639 254 23 74 chr3 84066182 84066235 -143458343 - MER63A DNA MER1_type -1632 56 2 699 278 92 9 chr3 84066235 84066322 -143458256 + LTR16C LTR ERVL 411 489 -2 1918 139 0 3 chr3 84066943 84067245 -143457333 + AluJb SINE Alu 12 312 0 775 242 72 98 chr3 84067245 84067580 -143456998 + MLT1J LTR MaLR 8 333 -178 2269 239 121 35 chr3 84068602 84069401 -143455177 + L1MC4 LINE L1 7175 8042 0 293 277 24 12 chr3 84069491 84069574 -143455004 - MIR3 SINE MIR -21 187 104 269 211 0 56 chr3 84069619 84069690 -143454888 + MIR SINE MIR 38 104 -158 783 235 60 57 chr3 84069697 84070171 -143454407 + MER39 LTR ERV1 9 687 -20 250 245 153 20 chr3 84070195 84070293 -143454285 + MIR SINE MIR 109 219 -43 281 47 23 0 chr3 84070433 84070476 -143454102 + (GA)n Simple_repeat Simple_repeat 1 44 0 418 168 11 11 chr3 84070477 84070572 -143454006 + GA-rich Low_complexity Low_complexity 2 96 0 516 278 102 75 chr3 84070608 84071004 -143453574 - MLT1L LTR MaLR -65 550 135 1152 231 76 56 chr3 84071004 84071282 -143453296 - MLT1J LTR MaLR 0 511 217 2178 71 3 10 chr3 84071282 84071577 -143453001 + AluSc SINE Alu 1 293 -16 1152 231 76 56 chr3 84071577 84071799 -143452779 - MLT1J LTR MaLR -294 217 1 516 278 102 75 chr3 84071799 84071923 -143452655 - MLT1L LTR MaLR -480 135 16 491 385 67 8 chr3 84072535 84072896 -143451682 + MLT1K LTR MaLR 5 386 -202 555 214 88 42 chr3 84072938 84073166 -143451412 + MLT1K LTR MaLR 32 588 0 1875 154 20 0 chr3 84073218 84073523 -143451055 - AluJb SINE Alu -1 311 1 1172 274 36 11 chr3 84073649 84074011 -143450567 - LTR16A LTR ERVL -20 430 60 2152 219 37 41 chr3 84074245 84074702 -143449876 - MER87 LTR ERV1 -8 533 77 2049 199 37 101 chr3 84074702 84075356 -143449222 + LTR9 LTR ERV1 1 612 0 2152 219 37 41 chr3 84075356 84075433 -143449145 - MER87 LTR ERV1 -464 77 1 268 125 0 0 chr3 84075444 84075484 -143449094 + LTR33 LTR ERVL 479 518 -3 716 234 15 68 chr3 84075496 84075761 -143448817 + MER34 LTR ERV1 8 258 -284 981 209 146 91 chr3 84075772 84076322 -143448256 - LTR49 LTR ERV1 -11 584 5 453 184 197 66 chr3 84076352 84076596 -143447982 + MER34 LTR ERV1 261 536 -6 1264 136 44 0 chr3 84076773 84076979 -143447599 + AluSg/x SINE Alu 89 303 -9 1065 124 10 59 chr3 84076981 84077183 -143447395 - MER67C LTR ERV1 -18 692 501 1079 171 117 29 chr3 84077184 84077458 -143447120 - MER67C LTR ERV1 -374 336 39 555 211 119 64 chr3 84077713 84077862 -143446716 + MER34C LTR ERV1 6 145 -595 5090 73 47 1 chr3 84077862 84078523 -143446055 + LTR8 LTR ERV1 1 691 0 555 211 119 64 chr3 84078523 84078720 -143445858 + MER34C LTR ERV1 145 485 -255 842 110 0 39 chr3 84078774 84078901 -143445677 - FLAM_A SINE Alu -12 130 9 393 211 125 40 chr3 84078927 84079079 -143445499 + MER34 LTR ERV1 378 542 0 427 176 14 0 chr3 84079135 84079209 -143445369 + MLT1C LTR MaLR 1 75 -392 5012 96 1 1 chr3 84079209 84079869 -143444709 + PABL_A LTR ERV1 1 660 0 248 91 0 0 chr3 84080091 84080124 -143444454 + MER51B LTR ERV1 343 375 -2 406 92 61 259 chr3 84080126 84080249 -143444329 + MLT1C LTR MaLR 72 153 -237 449 130 0 139 chr3 84080249 84080364 -143444214 + MER31A LTR ERV1 1 99 -386 591 112 20 20 chr3 84080384 84080482 -143444096 + MER4A LTR ERV1 1 98 -566 1786 97 37 56 chr3 84080482 84080834 -143443744 + MER4A LTR ERV1 261 664 0 2444 146 18 8 chr3 84080840 84081230 -143443348 + MER31A LTR ERV1 92 485 0 1263 206 19 58 chr3 84081234 84081545 -143443033 + MLT1C LTR MaLR 169 467 0 509 274 78 41 chr3 84081560 84081731 -143442847 + MIR SINE MIR 36 218 -44 2376 206 57 25 chr3 84081731 84082256 -143442322 + MLT1F LTR MaLR 1 542 0 509 274 78 41 chr3 84082256 84082303 -143442275 + MIR SINE MIR 218 262 0 347 308 38 14 chr3 84083929 84084140 -143440438 - MLT1K LTR MaLR -8 580 365 1165 288 37 11 chr3 84084232 84084607 -143439971 + LTR16C LTR ERVL 97 481 -10 693 343 90 12 chr3 84084611 84084955 -143439623 - MLT1K LTR MaLR -214 374 4 664 197 7 29 chr3 84085117 84085254 -143439324 + AluJo SINE Alu 6 139 -173 226 229 156 31 chr3 84085753 84085849 -143438729 - L2 LINE L2 -3 3269 3162 1745 204 84 14 chr3 84085883 84086300 -143438278 + L1MCa LINE L1 26 471 -5955 206 309 191 0 chr3 84086374 84086536 -143438042 - L2 LINE L2 -358 2956 2764 2372 87 0 0 chr3 84086601 84086910 -143437668 - AluSx SINE Alu -3 309 1 450 313 6 31 chr3 84087166 84087326 -143437252 + MIR SINE MIR 41 196 -66 960 340 34 19 chr3 84087330 84087747 -143436831 + L2 LINE L2 2362 2784 -530 1932 169 79 17 chr3 84188027 84188430 -143336148 + MLT1C LTR MaLR 14 441 -26 2447 161 0 0 chr3 84188448 84188839 -143335739 + MER57A LTR ERV1 13 403 0 242 69 0 0 chr3 84188841 84188870 -143335708 + MLT1B LTR MaLR 362 390 0 183 80 0 0 chr3 84188977 84189002 -143335576 + (TC)n Simple_repeat Simple_repeat 2 26 0 901 134 0 8 chr3 84189009 84189143 -143335435 - AluSq/x SINE Alu -180 133 1 630 229 194 55 chr3 84189149 84189340 -143335238 - HAL1 LINE L1 -1480 1027 864 1873 185 0 0 chr3 84189340 84189643 -143334935 + AluJb SINE Alu 1 303 -9 630 229 194 55 chr3 84189643 84189796 -143334782 - HAL1 LINE L1 -1643 864 635 872 207 119 99 chr3 84189854 84190309 -143334269 - HAL1 LINE L1 -2032 475 12 2281 195 10 33 chr3 84190335 84190852 -143333726 + L1MB8 LINE L1 3928 4432 -1714 1124 222 38 7 chr3 84190956 84191244 -143333334 - L1M4 LINE L1 -1430 4716 4420 180 0 0 0 chr3 84191307 84191327 -143333251 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2577 218 27 12 chr3 84191334 84191926 -143332652 + L1MB8 LINE L1 4439 5039 -1107 1365 129 22 27 chr3 84191926 84192150 -143332428 + AluJo SINE Alu 82 304 -8 1171 184 76 0 chr3 84192151 84192437 -143332141 + L1MB8 LINE L1 5033 5336 -819 805 164 89 0 chr3 84192442 84192588 -143331990 + FRAM SINE Alu 8 166 -10 718 132 0 8 chr3 84192589 84192710 -143331868 + L1MB8 LINE L1 5306 5425 -759 3003 173 47 21 chr3 84192725 84193386 -143331192 + L1MB8 LINE L1 5486 6163 -15 21 0 0 0 chr3 84193393 84193414 -143331164 + AT_rich Low_complexity Low_complexity 1 21 0 2504 60 0 29 chr3 84193501 84193816 -143330762 - AluY SINE Alu -4 307 2 364 260 29 58 chr3 84193884 84194033 -143330545 + MIR SINE MIR 16 159 -64 580 199 139 7 chr3 84194139 84194290 -143330288 - MLT1K LTR MaLR 0 588 418 700 256 71 21 chr3 84194306 84194544 -143330034 + MIR SINE MIR 12 261 -1 230 231 115 39 chr3 84194711 84194789 -143329789 - MLT1K LTR MaLR -358 230 147 2153 165 10 63 chr3 84196078 84196490 -143328088 - MLT1B LTR MaLR 0 390 1 1666 121 47 74 chr3 84196595 84196893 -143327685 - AluSx SINE Alu -22 290 1 186 103 0 0 chr3 84196938 84196967 -143327611 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 187 300 200 0 chr3 84197055 84197165 -143327413 - L2 LINE L2 0 3313 3182 681 317 48 36 chr3 84197675 84198222 -143326356 - L2 LINE L2 0 3313 2692 1677 98 9 0 chr3 84198253 84198468 -143326110 - AluSq SINE Alu -96 217 1 662 252 81 17 chr3 84198691 84199013 -143325565 - MLT1I LTR MaLR -3 406 36 1568 185 92 16 chr3 84199456 84199827 -143324751 + MLT1B LTR MaLR 1 380 -10 1691 161 54 10 chr3 84199849 84200147 -143324431 + AluJo SINE Alu 1 311 -1 858 252 43 48 chr3 84200156 84200572 -143324006 - HAL1 LINE L1 -74 2433 2020 893 252 135 47 chr3 84200609 84200876 -143323702 - LTR33 LTR ERVL -6 515 273 2164 141 123 8 chr3 84200876 84201258 -143323320 - MSTA LTR MaLR -2 426 1 893 252 135 47 chr3 84201258 84201463 -143323115 - LTR33 LTR ERVL -248 273 1 2071 262 102 17 chr3 84201479 84202251 -143322327 - HAL1 LINE L1 -543 1964 1127 2052 164 77 17 chr3 84202252 84202668 -143321910 + MLT1C LTR MaLR 1 441 -26 2447 161 0 0 chr3 84202686 84203077 -143321501 + MER57A LTR ERV1 13 403 0 242 69 0 0 chr3 84203079 84203108 -143321470 + MLT1B LTR MaLR 362 390 0 183 80 0 0 chr3 84203215 84203240 -143321338 + (TC)n Simple_repeat Simple_repeat 2 26 0 901 134 0 8 chr3 84203247 84203381 -143321197 - AluSq/x SINE Alu -180 133 1 630 224 198 55 chr3 84203387 84203577 -143321001 - HAL1 LINE L1 -1480 1027 865 1873 185 0 0 chr3 84203577 84203880 -143320698 + AluJb SINE Alu 1 303 -9 630 224 198 55 chr3 84203880 84204033 -143320545 - HAL1 LINE L1 -1642 865 635 872 207 119 99 chr3 84204091 84204546 -143320032 - HAL1 LINE L1 -2032 475 12 2281 195 10 33 chr3 84204572 84205089 -143319489 + L1MB8 LINE L1 3928 4432 -1714 1124 222 38 7 chr3 84205193 84205481 -143319097 - L1M4 LINE L1 -1430 4716 4420 180 0 0 0 chr3 84205544 84205564 -143319014 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2577 218 27 12 chr3 84205571 84206163 -143318415 + L1MB8 LINE L1 4439 5039 -1107 1365 129 22 27 chr3 84206163 84206387 -143318191 + AluJo SINE Alu 82 304 -8 1171 184 76 0 chr3 84206388 84206674 -143317904 + L1MB8 LINE L1 5033 5336 -819 805 164 89 0 chr3 84206679 84206825 -143317753 + FRAM SINE Alu 8 166 -10 718 132 0 8 chr3 84206826 84206947 -143317631 + L1MB8 LINE L1 5306 5425 -759 3003 173 47 21 chr3 84206962 84207623 -143316955 + L1MB8 LINE L1 5486 6163 -15 21 0 0 0 chr3 84207630 84207651 -143316927 + AT_rich Low_complexity Low_complexity 1 21 0 2504 60 0 29 chr3 84207738 84208053 -143316525 - AluY SINE Alu -4 307 2 364 260 29 58 chr3 84208121 84208270 -143316308 + MIR SINE MIR 16 159 -64 580 199 139 7 chr3 84208376 84208527 -143316051 - MLT1K LTR MaLR 0 588 418 700 256 71 21 chr3 84208543 84208781 -143315797 + MIR SINE MIR 12 261 -1 230 231 115 39 chr3 84208948 84209026 -143315552 - MLT1K LTR MaLR -358 230 147 2153 165 10 63 chr3 84210315 84210727 -143313851 - MLT1B LTR MaLR 0 390 1 1666 121 47 74 chr3 84210832 84211130 -143313448 - AluSx SINE Alu -22 290 1 186 103 0 0 chr3 84211175 84211204 -143313374 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 187 300 200 0 chr3 84211292 84211402 -143313176 - L2 LINE L2 0 3313 3182 681 313 57 35 chr3 84211912 84212479 -143312099 - L2 LINE L2 0 3313 2666 261 291 13 0 chr3 84212502 84212581 -143311997 + MLT1K LTR MaLR 509 588 0 549 289 99 26 chr3 84213267 84213499 -143311079 + MIR SINE MIR 11 259 -3 628 271 61 52 chr3 84214070 84214299 -143310279 - MIR SINE MIR 0 262 32 210 128 0 0 chr3 84214944 84214983 -143309595 + (A)n Simple_repeat Simple_repeat 1 39 0 1196 265 133 49 chr3 84215038 84215566 -143309012 + MLT1K LTR MaLR 17 588 0 436 203 275 0 chr3 84215595 84215733 -143308845 + MIR SINE MIR 34 209 -53 186 237 34 0 chr3 84216154 84216213 -143308365 - MIR SINE MIR -168 94 34 892 189 6 0 chr3 84216295 84216454 -143308124 - AluJb SINE Alu -16 296 137 454 298 8 23 chr3 84216512 84216643 -143307935 + L2 LINE L2 3183 3311 -2 1752 142 0 33 chr3 84216728 84217030 -143307548 - AluSx SINE Alu -20 292 1 1437 206 143 50 chr3 84217262 84217724 -143306854 - MLT1D LTR MaLR 0 505 1 206 256 0 0 chr3 84218151 84218194 -143306384 - L2 LINE L2 -3 3310 3268 472 267 198 17 chr3 84218306 84218629 -143305949 - L2 LINE L2 -252 3061 2653 888 183 48 70 chr3 84218629 84218685 -143305893 - MER58A DNA MER1_type -2196 224 168 1657 176 10 0 chr3 84218685 84218987 -143305591 + AluJb SINE Alu 1 305 -7 888 183 48 70 chr3 84218987 84219159 -143305419 - MER58A DNA MER1_type -2252 168 1 472 267 198 17 chr3 84219159 84219181 -143305397 - L2 LINE L2 -660 2653 2636 538 225 86 20 chr3 84219185 84219336 -143305242 + MIR SINE MIR 84 244 -18 363 235 15 7 chr3 84220391 84220527 -143304051 + (TAGA)n Simple_repeat Simple_repeat 2 138 0 356 345 17 0 chr3 84220568 84220684 -143303894 - L2 LINE L2 -2 3270 3153 487 233 9 19 chr3 84220842 84220981 -143303597 + MIR SINE MIR 1 137 -71 * 641 288 14 33 chr3 84220974 84221186 -143303392 - L2 LINE L2 -3 3310 3103 1346 189 173 35 chr3 84221292 84221668 -143302910 + MLT1D LTR MaLR 78 505 0 271 265 60 36 chr3 84222240 84222323 -143302255 - MIR SINE MIR -70 192 108 699 305 19 5 chr3 84222351 84222564 -143302014 - MIR SINE MIR -46 216 1 439 312 38 32 chr3 84223351 84223537 -143301041 - MIR SINE MIR -11 251 65 358 146 0 0 chr3 84223591 84223646 -143300932 - MIR SINE MIR -67 141 87 187 267 0 0 chr3 84223783 84223828 -143300750 + MIR SINE MIR 111 155 -107 182 180 40 0 chr3 84224605 84224655 -143299923 + (CAGT)n Simple_repeat Simple_repeat 3 54 0 300 219 32 41 chr3 84224751 84224874 -143299704 + (CAGT)n Simple_repeat Simple_repeat 4 125 0 302 273 45 26 chr3 84225319 84225473 -143299105 + (CAGT)n Simple_repeat Simple_repeat 2 158 0 345 47 0 0 chr3 84225693 84225736 -143298842 + (CAGT)n Simple_repeat Simple_repeat 4 46 0 286 222 0 28 chr3 84226153 84226225 -143298353 + CT-rich Low_complexity Low_complexity 2 71 0 612 118 41 12 chr3 84226345 84226515 -143298063 + (CA)n Simple_repeat Simple_repeat 1 175 0 189 155 48 24 chr3 84226548 84226632 -143297946 + (CA)n Simple_repeat Simple_repeat 1 86 0 281 187 33 11 chr3 84226684 84226775 -143297803 + (CA)n Simple_repeat Simple_repeat 1 93 0 502 308 6 23 chr3 84227283 84227455 -143297123 + MIR SINE MIR 60 228 -34 528 324 36 0 chr3 84227592 84227803 -143296775 - MIR SINE MIR -12 250 34 353 250 65 19 chr3 84228901 84229009 -143295569 + L2 LINE L2 2941 3053 -219 1089 160 139 36 chr3 84229009 84229290 -143295288 - MLT1B LTR MaLR -141 249 1 191 234 21 0 chr3 84229326 84229373 -143295205 + MIR SINE MIR 100 147 -115 201 257 57 0 chr3 84229402 84229472 -143295106 + MIR SINE MIR 43 116 -92 1766 232 101 31 chr3 84229475 84229962 -143294616 - MLT1G1 LTR MaLR -5 590 70 665 230 40 0 chr3 84230045 84230193 -143294385 - MIR SINE MIR -48 214 61 1831 113 60 0 chr3 84230656 84230938 -143293640 - AluSx SINE Alu -13 299 1 508 274 59 0 chr3 84231014 84231149 -143293429 - MIR3 SINE MIR -58 150 8 497 306 28 56 chr3 84231277 84231529 -143293049 + MIR SINE MIR 4 248 -14 191 295 98 0 chr3 84231640 84231701 -143292877 - MIR SINE MIR -63 145 79 234 62 0 0 chr3 84231726 84231758 -143292820 + (TGAA)n Simple_repeat Simple_repeat 4 35 0 462 254 92 24 chr3 84231762 84232088 -143292490 - LTR16C LTR ERVL 0 491 126 318 309 121 0 chr3 84232688 84232837 -143291741 + MIR SINE MIR 29 195 -67 428 280 11 80 chr3 84233104 84233152 -143291426 - MIR SINE MIR -73 189 139 2473 3 0 14 chr3 84233152 84233437 -143291141 - AluYa5 SINE Alu -1 310 30 428 280 11 80 chr3 84233437 84233563 -143291015 - MIR SINE MIR -123 139 27 874 232 6 0 chr3 84233689 84233866 -143290712 - MER45A DNA AcHobo 0 178 1 587 315 65 9 chr3 84233911 84234127 -143290451 + MIR SINE MIR 8 235 -27 742 251 23 0 chr3 84234957 84235132 -143289446 - MER5A DNA MER1_type -8 181 3 180 0 0 0 chr3 84235328 84235348 -143289230 + (CTTTG)n Simple_repeat Simple_repeat 1 20 0 518 259 84 0 chr3 84235441 84235572 -143289006 - MIR SINE MIR -87 175 34 572 335 48 32 chr3 84235589 84235840 -143288738 + L2 LINE L2 3016 3270 -2 366 253 0 17 chr3 84236113 84236291 -143288287 + (TGGA)n Simple_repeat Simple_repeat 3 177 0 488 326 0 11 chr3 84236310 84236485 -143288093 + (TGGA)n Simple_repeat Simple_repeat 4 176 0 330 227 5 43 chr3 84236510 84236695 -143287883 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 340 240 11 27 chr3 84236730 84236913 -143287665 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 852 145 0 0 chr3 84237533 84237678 -143286900 + L1MA4 LINE L1 6155 6299 -1 198 0 0 0 chr3 84237713 84237735 -143286843 + (TG)n Simple_repeat Simple_repeat 2 23 0 567 222 7 44 chr3 84237739 84237874 -143286704 - MIR SINE MIR -21 241 112 1023 231 70 87 chr3 84237888 84238421 -143286157 + MLT1G LTR MaLR 10 542 -13 205 250 69 14 chr3 84238604 84238676 -143285902 + MIR SINE MIR 162 237 -25 1626 256 44 40 chr3 84238676 84239586 -143284992 + L2 LINE L2 2397 3312 -1 836 266 71 53 chr3 84239963 84240286 -143284292 - MER102b DNA MER1_type -12 329 1 276 133 22 0 chr3 84240525 84240570 -143284008 + MLT1A1 LTR MaLR 1 46 -319 270 0 0 0 chr3 84240719 84240749 -143283829 + (CA)n Simple_repeat Simple_repeat 1 30 0 225 286 176 22 chr3 84240907 84240998 -143283580 + L2 LINE L2 3163 3267 -5 1358 249 26 67 chr3 84241236 84241729 -143282849 - MLT1J LTR MaLR -3 508 36 2372 93 0 0 chr3 84241731 84242044 -143282534 + AluSq SINE Alu 1 313 0 2041 134 0 3 chr3 84242464 84242769 -143281809 + AluSq SINE Alu 1 304 -9 183 231 0 0 chr3 84243200 84243239 -143281339 - L2 LINE L2 -18 3254 3216 258 250 0 100 chr3 84243954 84244054 -143280524 - MIR3 SINE MIR -34 174 85 482 268 0 38 chr3 84244145 84244302 -143280276 + MER103 DNA DNA 9 159 -7 373 269 185 0 chr3 84244378 84244486 -143280092 + MIR SINE MIR 19 146 -116 1485 164 11 111 chr3 84244598 84244848 -143279730 - MER58B DNA MER1_type -2079 341 140 2093 118 3 3 chr3 84244848 84245152 -143279426 - AluSx SINE Alu -8 304 1 1485 164 11 111 chr3 84245152 84245280 -143279298 - MER58B DNA MER1_type -2280 140 1 2050 115 6 10 chr3 84245423 84245736 -143278842 + AluSq SINE Alu 1 312 -1 257 264 151 0 chr3 84247048 84247154 -143277424 - MIR3 SINE MIR -54 154 33 325 152 127 13 chr3 84247591 84247670 -143276908 + MER117 DNA MER1_type 79 166 -31 26 0 0 0 chr3 84251717 84251743 -143272835 + AT_rich Low_complexity Low_complexity 1 26 0 180 0 0 0 chr3 84251777 84251797 -143272781 + (T)n Simple_repeat Simple_repeat 1 20 0 24 0 0 0 chr3 84252525 84252549 -143272029 + AT_rich Low_complexity Low_complexity 1 24 0 32 0 0 0 chr3 84252744 84252776 -143271802 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 84252963 84252984 -143271594 + AT_rich Low_complexity Low_complexity 1 21 0 1734 117 38 24 chr3 84255367 84255657 -143268921 - AluSg SINE Alu -16 294 1 339 219 73 21 chr3 84258420 84258516 -143266062 - MIR SINE MIR -83 179 79 784 228 114 9 chr3 84262197 84262416 -143262162 + Charlie1 DNA MER1_type 1 242 -2519 624 229 7 0 chr3 84262396 84262536 -143262042 + Charlie1 DNA MER1_type 2619 2759 -2 * 368 293 57 9 chr3 84263648 84263754 -143260824 + MIR3 SINE MIR 85 195 -13 913 200 80 15 chr3 84264574 84264774 -143259804 - MER20 DNA MER1_type -6 213 1 244 281 37 24 chr3 84266929 84267011 -143257567 - MIR SINE MIR -6 256 174 233 322 69 23 chr3 84267115 84267289 -143257289 - L2 LINE L2 -1230 2084 1903 1445 206 4 11 chr3 84267963 84268244 -143256334 + AluJo SINE Alu 1 279 -33 2489 222 128 32 chr3 84268429 84269297 -143255281 - L1MC4a LINE L1 -8 7800 6850 1622 184 0 42 chr3 84269305 84269615 -143254963 - AluJo SINE Alu -11 301 5 1820 208 53 17 chr3 84270415 84271083 -143253495 - L1ME2 LINE L1 -2 6162 5393 1372 190 80 0 chr3 84271697 84271852 -143252726 - AluJo SINE Alu -6 296 155 180 0 0 0 chr3 84271852 84271872 -143252706 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 1372 190 80 0 chr3 84271872 84271990 -143252588 - AluJo SINE Alu -147 155 1 2495 77 3 0 chr3 84272914 84273225 -143251353 + AluSx SINE Alu 1 312 0 1083 140 34 0 chr3 84273927 84274106 -143250472 + MER2 DNA MER2_type 26 210 -135 2374 197 71 20 chr3 84275747 84276285 -143248293 + MLT1F1 LTR MaLR 1 565 -2 516 141 0 24 chr3 84276308 84276393 -143248185 - AluS SINE Alu -230 83 1 422 208 94 0 chr3 84276414 84276510 -143248068 - MER58 DNA MER1_type 0 2420 2316 279 226 0 0 chr3 84276507 84276569 -143248009 - MER58 DNA MER1_type -241 100 39 * 1610 170 110 24 chr3 84276765 84277101 -143247477 + MLT1A1 LTR MaLR 1 365 0 1508 146 73 43 chr3 84279245 84279574 -143245004 - MER44D DNA MER2_type 0 609 1 241 328 126 17 chr3 84280608 84280782 -143243796 - L2 LINE L2 -1 3312 3120 313 244 24 12 chr3 84281219 84281301 -143243277 + MER5B DNA MER1_type 1 83 -95 278 259 0 74 chr3 84281448 84281556 -143243022 - MER5B DNA MER1_type -77 101 2 1369 184 197 21 chr3 84283589 84283974 -143240604 + MSTB2 LTR MaLR 3 455 -2 2009 126 0 16 chr3 84284722 84285031 -143239547 - AluSx SINE Alu -8 304 1 795 169 62 28 chr3 84285619 84285797 -143238781 - MER105 DNA DNA -20 184 1 470 194 39 84 chr3 84287498 84287653 -143236925 + MLT1A1 LTR MaLR 3 150 -215 669 167 0 8 chr3 84287665 84287785 -143236793 + FLAM_C SINE Alu 23 141 -2 752 193 62 19 chr3 84287818 84287979 -143236599 + MLT1A1 LTR MaLR 164 331 -34 1424 212 113 3 chr3 84288088 84288399 -143236179 + Tigger7 DNA MER2_type 1 345 -2142 830 165 6 24 chr3 84288400 84288564 -143236014 + Tigger7 DNA MER2_type 2320 2480 -7 594 223 43 7 chr3 84288799 84288938 -143235640 - MLT1A1 LTR MaLR -2 363 220 2763 211 76 46 chr3 84288946 84289319 -143235259 + L1ME1 LINE L1 5281 5641 -525 342 0 0 0 chr3 84289319 84289357 -143235221 + (TG)n Simple_repeat Simple_repeat 1 38 0 2763 211 76 46 chr3 84289357 84289839 -143234739 + L1ME1 LINE L1 5641 6162 -4 364 328 63 26 chr3 84290442 84290631 -143233947 + L1MB8 LINE L1 3251 3446 -2700 449 211 28 28 chr3 84290631 84290740 -143233838 + FLAM_A SINE Alu 32 140 -2 1639 178 10 27 chr3 84290743 84291035 -143233543 + AluJo SINE Alu 1 287 -25 1485 196 32 18 chr3 84291090 84291371 -143233207 + AluJo SINE Alu 1 285 -27 1257 118 0 0 chr3 84291441 84291619 -143232959 - AluSp SINE Alu -5 308 131 2537 205 211 55 chr3 84291656 84292456 -143232122 + L1MB8 LINE L1 3614 4287 -1879 920 220 0 19 chr3 84292456 84292665 -143231913 - MER3 DNA MER1_type -4 205 1 2537 205 211 55 chr3 84292665 84293420 -143231158 + L1MB8 LINE L1 4287 5433 -733 251 253 20 86 chr3 84294768 84294883 -143229695 + L1ME1 LINE L1 1412 1533 -4863 1830 111 50 0 chr3 84294883 84295145 -143229433 + AluSx SINE Alu 1 275 -37 180 0 0 0 chr3 84295147 84295167 -143229411 + (CA)n Simple_repeat Simple_repeat 1 20 0 251 253 20 86 chr3 84295167 84295293 -143229285 + L1ME1 LINE L1 1534 1640 -4756 * 2829 184 58 14 chr3 84295292 84295924 -143228654 + L1MB8 LINE L1 5514 6173 -5 1941 238 110 11 chr3 84295970 84296336 -143228242 + L1ME1 LINE L1 1681 2009 -4206 1569 197 0 23 chr3 84296336 84296646 -143227932 + AluJb SINE Alu 1 303 -9 1941 238 110 11 chr3 84296646 84297080 -143227498 + L1ME1 LINE L1 2009 2540 -3675 2786 218 96 41 chr3 84297092 84297799 -143226779 + L1ME1 LINE L1 2879 3546 -2669 2379 88 0 3 chr3 84297799 84298105 -143226473 + AluSc SINE Alu 1 305 -4 2786 218 96 41 chr3 84298105 84298489 -143226089 + L1ME1 LINE L1 3546 4040 -2175 1180 203 27 37 chr3 84298489 84298785 -143225793 + AluJo SINE Alu 1 293 -9 2786 218 96 41 chr3 84298785 84298858 -143225720 + L1ME1 LINE L1 4040 4108 -2107 2634 225 99 25 chr3 84298860 84299825 -143224753 + L1ME1 LINE L1 4149 5185 -1030 2488 216 79 40 chr3 84299882 84299961 -143224617 + L1ME1 LINE L1 5352 5426 -809 2023 150 0 0 chr3 84299961 84300267 -143224311 + AluSx SINE Alu 3 308 -4 2488 216 79 40 chr3 84300267 84300945 -143223633 + L1ME1 LINE L1 5426 6139 -96 2179 112 7 0 chr3 84302310 84302605 -143221973 + AluSp SINE Alu 1 297 -16 24 53 0 0 chr3 84303442 84303480 -143221098 + AT_rich Low_complexity Low_complexity 1 38 0 1660 166 0 24 chr3 84304439 84304735 -143219843 + AluJo SINE Alu 9 297 -15 215 348 43 28 chr3 84304735 84304876 -143219702 - L2 LINE L2 -219 3053 2911 2164 97 4 0 chr3 84305680 84305959 -143218619 + AluSx SINE Alu 1 280 -32 1439 26 0 11 chr3 84305968 84306236 -143218342 + (GAAA)n Simple_repeat Simple_repeat 1 264 0 204 227 23 0 chr3 84306387 84306431 -143218147 - L3b LINE CR1 -8 1575 1531 1639 193 0 37 chr3 84306432 84306753 -143217825 + AluJo SINE Alu 1 309 -3 273 290 92 38 chr3 84307764 84307895 -143216683 + MIR SINE MIR 54 191 -71 657 298 67 13 chr3 84308233 84308458 -143216120 - MIR SINE MIR -13 249 13 1414 169 53 7 chr3 84308468 84308770 -143215808 + MER33 DNA MER1_type 9 324 0 2962 178 59 22 chr3 84309233 84309939 -143214639 - L1MD2 LINE L1 -18 6224 5529 2282 86 0 3 chr3 84309977 84310278 -143214300 + AluY SINE Alu 1 300 -11 525 268 158 23 chr3 84310303 84310613 -143213965 - L1ME LINE L1 -301 5820 5469 1680 174 14 14 chr3 84310824 84311112 -143213466 - AluJo SINE Alu -16 296 9 412 172 35 46 chr3 84311375 84311462 -143213116 + MER5A DNA MER1_type 101 186 -3 257 192 14 68 chr3 84312049 84312122 -143212456 + MLT1K LTR MaLR 499 567 -21 265 272 67 50 chr3 84313401 84313581 -143210997 - L2 LINE L2 -1 3312 3130 259 295 86 22 chr3 84313837 84313976 -143210602 - L2 LINE L2 -494 2820 2673 197 304 14 72 chr3 84313977 84314115 -143210463 - L2 LINE L2 -962 2352 2223 314 213 25 12 chr3 84314728 84314808 -143209770 + L1ME3A LINE L1 5831 5911 -259 272 143 20 0 chr3 84314838 84314887 -143209691 - L1ME2 LINE L1 -242 5922 5873 302 224 127 37 chr3 84314943 84315077 -143209501 + L1ME3A LINE L1 5901 6046 -124 250 238 119 0 chr3 84315124 84315208 -143209370 + FLAM_C SINE Alu 36 129 -4 1440 187 7 49 chr3 84315324 84315629 -143208949 + AluJo SINE Alu 7 298 -14 351 271 0 12 chr3 84315632 84315717 -143208861 + L1ME3A LINE L1 6058 6141 -29 512 275 106 5 chr3 84316347 84316536 -143208042 + L2 LINE L2 3100 3307 -6 687 113 0 52 chr3 84317630 84317745 -143206833 + FLAM_C SINE Alu 27 135 -8 423 240 64 8 chr3 84318082 84318226 -143206352 + L1MB7 LINE L1 6007 6163 -10 1435 176 0 0 chr3 84318232 84318476 -143206102 + AluJb SINE Alu 48 291 -21 21 57 0 0 chr3 84321952 84321987 -143202591 + GC_rich Low_complexity Low_complexity 1 35 0 477 264 82 71 chr3 84322218 84322535 -143202043 - L1M4 LINE L1 -2785 3361 3028 24 53 0 0 chr3 84322752 84322790 -143201788 + GC_rich Low_complexity Low_complexity 1 38 0 195 42 0 0 chr3 84322814 84322838 -143201740 + (CCG)n Simple_repeat Simple_repeat 2 25 0 207 211 14 28 chr3 84322938 84323009 -143201569 + G-rich Low_complexity Low_complexity 2 71 0 21 0 0 0 chr3 84323063 84323084 -143201494 + GC_rich Low_complexity Low_complexity 1 21 0 310 280 112 28 chr3 84323599 84323742 -143200836 + MIR SINE MIR 106 260 -2 936 215 50 25 chr3 84324723 84324965 -143199613 - L1ME3 LINE L1 -152 6010 5763 2188 93 3 6 chr3 84325057 84325369 -143199209 + AluSx SINE Alu 1 311 -1 1623 165 0 0 chr3 84325779 84326039 -143198539 + AluSx SINE Alu 39 298 -14 611 251 32 168 chr3 84326152 84326401 -143198177 + L2 LINE L2 2853 3000 -313 1747 147 0 69 chr3 84326401 84326735 -143197843 - AluJb SINE Alu -1 311 1 611 251 32 168 chr3 84326735 84326990 -143197588 + L2 LINE L2 3000 3288 -25 390 293 135 31 chr3 84327027 84327490 -143197088 - L2 LINE L2 -2 3311 2737 4195 191 26 19 chr3 84328782 84329952 -143194626 + L1ME1 LINE L1 4963 6134 -32 807 164 0 0 chr3 84329952 84330074 -143194504 + FRAM SINE Alu 33 154 -22 693 240 176 5 chr3 84330227 84330448 -143194130 + L2 LINE L2 2376 2634 -680 397 228 81 54 chr3 84330491 84330640 -143193938 - MLT1I LTR MaLR -7 402 250 1336 209 58 58 chr3 84330643 84331021 -143193557 + MSTD LTR MaLR 6 383 -13 572 233 121 46 chr3 84331025 84331265 -143193313 - MLT1I LTR MaLR -149 260 3 596 269 170 9 chr3 84331265 84331694 -143192884 + L2 LINE L2 2654 3188 -125 354 45 0 0 chr3 84331694 84331738 -143192840 + (TG)n Simple_repeat Simple_repeat 2 45 0 596 269 170 9 chr3 84331738 84331804 -143192774 + L2 LINE L2 3188 3242 -71 2176 85 7 3 chr3 84331970 84332265 -143192313 - AluSp SINE Alu -17 296 1 1703 185 0 0 chr3 84332290 84332588 -143191990 - AluJb SINE Alu -14 298 1 634 170 30 44 chr3 84332648 84332783 -143191795 - FLAM_A SINE Alu 0 133 1 217 312 32 21 chr3 84332828 84332921 -143191657 - MIR3 SINE MIR -7 201 108 1914 155 19 77 chr3 84333194 84333608 -143190970 + MLT1B LTR MaLR 1 390 0 1740 157 14 0 chr3 84333648 84333941 -143190637 + AluJb SINE Alu 1 297 -15 878 245 24 55 chr3 84333962 84334215 -143190363 - MIR SINE MIR 0 262 18 285 284 146 0 chr3 84334232 84334336 -143190242 - MIR SINE MIR -66 142 36 383 237 52 21 chr3 84334633 84334730 -143189848 - MIR SINE MIR -93 115 16 226 281 88 0 chr3 84334743 84334800 -143189778 - L2 LINE L2 -10 3303 3242 228 265 133 30 chr3 84335573 84335739 -143188839 - L2 LINE L2 -266 3006 2824 359 327 34 29 chr3 84336023 84336228 -143188350 - L2 LINE L2 -773 2541 2336 647 258 103 0 chr3 84336423 84336617 -143187961 - MLT1L LTR MaLR -221 394 181 462 279 7 29 chr3 84336891 84337027 -143187551 + MIR SINE MIR 2 134 -128 26 0 0 0 chr3 84337027 84337053 -143187525 + AT_rich Low_complexity Low_complexity 1 26 0 2076 106 0 0 chr3 84337053 84337335 -143187243 - AluSx SINE Alu -22 290 9 765 298 30 46 chr3 84337350 84337716 -143186862 - L2 LINE L2 -1104 2210 1851 461 333 14 7 chr3 84339470 84339614 -143184964 - L2 LINE L2 0 3272 3128 200 341 56 56 chr3 84339620 84339693 -143184885 - L2 LINE L2 -95 3218 3146 1865 151 3 0 chr3 84339693 84339991 -143184587 + AluSx SINE Alu 1 299 -13 200 341 56 56 chr3 84339991 84340064 -143184514 - L2 LINE L2 -167 3146 3069 1089 175 24 9 chr3 84340064 84340275 -143184303 + MER20 DNA MER1_type 4 217 -2 200 341 56 56 chr3 84340275 84340341 -143184237 - L2 LINE L2 -243 3070 3005 611 302 190 28 chr3 84340625 84341376 -143183202 - L2 LINE L2 -588 2726 1854 1284 268 138 30 chr3 84341509 84342036 -143182542 - MLT1L LTR MaLR -31 584 1 695 210 102 0 chr3 84342300 84342457 -143182121 - MIR SINE MIR -15 247 75 660 294 55 31 chr3 84342980 84343235 -143181343 - MIR SINE MIR 0 262 2 1997 151 0 0 chr3 84343547 84343859 -143180719 + AluSx SINE Alu 1 312 0 476 264 14 90 chr3 84344231 84344375 -143180203 - MER91A DNA MER1_type 0 196 64 262 299 220 19 chr3 84344756 84344970 -143179608 + MIR SINE MIR 6 262 0 216 97 0 0 chr3 84345025 84345056 -143179522 + (T)n Simple_repeat Simple_repeat 1 31 0 1933 135 0 28 chr3 84345109 84345428 -143179150 + AluJb SINE Alu 1 310 -2 878 129 0 0 chr3 84345842 84345974 -143178604 + AluSg/x SINE Alu 168 299 -13 2363 231 51 25 chr3 84347107 84347710 -143176868 - MLT1E2 LTR MaLR -7 619 1 1244 192 101 77 chr3 84347803 84347936 -143176642 - MLT1F1 LTR MaLR 0 567 439 2042 128 75 19 chr3 84347936 84348255 -143176323 + MER1B DNA MER1_type 1 337 0 1244 192 101 77 chr3 84348255 84348496 -143176082 - MLT1F1 LTR MaLR -128 439 184 504 118 0 13 chr3 84348575 84348651 -143175927 - Alu SINE Alu -10 301 227 1529 103 13 13 chr3 84348751 84348984 -143175594 - AluSx SINE Alu -62 250 18 949 141 7 0 chr3 84348984 84349133 -143175445 + AluSg/x SINE Alu 147 296 -16 2239 147 16 16 chr3 84349133 84349472 -143175106 - L1MB2 LINE L1 -40 6131 5790 1229 205 25 113 chr3 84349472 84349872 -143174706 + MLT1A1 LTR MaLR 1 365 0 2239 147 16 16 chr3 84349872 84349919 -143174659 - L1MB2 LINE L1 -380 5791 5745 306 284 10 51 chr3 84349994 84350136 -143174442 - MER5A DNA MER1_type -13 165 29 216 0 0 0 chr3 84350136 84350160 -143174418 + (T)n Simple_repeat Simple_repeat 1 24 0 2360 148 30 5 chr3 84350173 84350579 -143173999 - L1MB7 LINE L1 -19 6165 5750 362 277 38 82 chr3 84350643 84350744 -143173834 + MER5A DNA MER1_type 27 120 -69 1699 173 3 3 chr3 84350744 84351050 -143173528 - AluJb SINE Alu -4 308 3 362 277 38 82 chr3 84351050 84351107 -143173471 + MER5A DNA MER1_type 120 178 -11 206 321 0 0 chr3 84351415 84351467 -143173111 - L3b LINE CR1 0 1583 1532 234 325 147 13 chr3 84351467 84351624 -143172954 + MER5B DNA MER1_type 1 178 0 392 220 39 66 chr3 84352110 84352292 -143172286 + MER5B DNA MER1_type 1 177 -1 612 255 143 12 chr3 84352813 84352974 -143171604 - MER5A DNA MER1_type 0 189 8 429 254 8 75 chr3 84353010 84353144 -143171434 + MIR3 SINE MIR 36 160 -48 456 290 95 15 chr3 84353919 84354119 -143170459 - MIR SINE MIR -11 251 36 22 0 0 0 chr3 84354283 84354305 -143170273 + AT_rich Low_complexity Low_complexity 1 22 0 284 260 47 55 chr3 84354494 84354621 -143169957 - L2 LINE L2 -3 3310 3185 262 301 7 55 chr3 84355117 84355263 -143169315 + L1ME4a LINE L1 5978 6116 -5 314 312 24 22 chr3 84355383 84355512 -143169066 + MIR SINE MIR 20 153 -58 1907 209 89 35 chr3 84355665 84355797 -143168781 + MLT1F LTR MaLR 19 142 -400 1881 107 209 8 chr3 84355797 84356152 -143168426 + MSTA LTR MaLR 3 428 0 1907 209 89 35 chr3 84356152 84356512 -143168066 + MLT1F LTR MaLR 142 538 -4 323 311 75 0 chr3 84356543 84356649 -143167929 + L3 LINE CR1 320 433 -1144 1423 194 43 65 chr3 84356805 84357176 -143167402 + MLT1A1 LTR MaLR 3 365 0 1754 151 28 7 chr3 84357218 84357509 -143167069 + AluSx SINE Alu 1 297 -15 1883 130 19 29 chr3 84357951 84358266 -143166312 + AluSx SINE Alu 1 312 0 183 295 33 0 chr3 84358533 84358594 -143165984 + MIR SINE MIR 4 66 -196 210 260 71 39 chr3 84358612 84358728 -143165850 - MIR SINE MIR -54 154 42 288 327 33 27 chr3 84358811 84358961 -143165617 + L3b LINE CR1 1421 1571 -12 248 317 50 19 chr3 84359217 84359378 -143165200 - L1ME4a LINE L1 -1 6120 5955 549 229 67 107 chr3 84359472 84359725 -143164853 - MIR SINE MIR -2 260 18 402 21 0 0 chr3 84359729 84359776 -143164802 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 807 148 0 0 chr3 84359776 84359898 -143164680 - FLAM_C SINE Alu -21 122 1 2126 120 0 3 chr3 84360007 84360307 -143164271 - AluSx SINE Alu -13 299 1 1799 130 101 46 chr3 84360721 84360935 -143163643 - THE1B LTR MaLR 0 364 122 2020 125 20 3 chr3 84360935 84361230 -143163348 + AluSx SINE Alu 1 300 -12 1799 130 101 46 chr3 84361230 84361360 -143163218 - THE1B LTR MaLR -242 122 1 476 255 7 28 chr3 84361449 84361594 -143162984 - LTR67 LTR ERVL -2 555 414 609 167 42 17 chr3 84362125 84362245 -143162333 - THE1C LTR MaLR 0 375 253 368 191 281 0 chr3 84362245 84362334 -143162244 + MER5A DNA MER1_type 75 188 -1 1855 153 3 7 chr3 84362361 84362669 -143161909 - AluJb SINE Alu -5 307 1 246 215 0 51 chr3 84363453 84363532 -143161046 + (CTGGGG)n Simple_repeat Simple_repeat 6 80 0 504 199 0 170 chr3 84364507 84364606 -143159972 - MIR SINE MIR -14 248 134 1513 171 52 11 chr3 84364606 84364892 -143159686 - AluJo SINE Alu -8 304 7 1044 180 32 23 chr3 84364897 84365114 -143159464 + MER20 DNA MER1_type 1 219 0 504 199 0 170 chr3 84365114 84365179 -143159399 - MIR SINE MIR -132 130 107 1895 125 27 3 chr3 84365266 84365562 -143159016 - AluSx SINE Alu -9 303 1 224 30 30 0 chr3 84366273 84366306 -143158272 + (CAAA)n Simple_repeat Simple_repeat 2 35 0 2006 122 3 3 chr3 84366307 84366611 -143157967 + AluSx SINE Alu 1 304 -8 2207 125 0 0 chr3 84367416 84367728 -143156850 + AluSx SINE Alu 1 312 0 485 292 123 18 chr3 84368244 84368415 -143156163 - MER91A DNA MER1_type 0 196 8 918 150 56 0 chr3 84368695 84368855 -143155723 + AluJb SINE Alu 130 298 -14 2206 116 3 0 chr3 84368876 84369187 -143155391 - AluSx SINE Alu 0 312 1 273 280 72 40 chr3 84369307 84369432 -143155146 - MER94 DNA DNA -2 132 4 2011 115 41 0 chr3 84369516 84369811 -143154767 + AluSx SINE Alu 1 307 -5 2160 203 108 6 chr3 84369954 84370446 -143154132 - MLT1F LTR MaLR 0 542 1 208 286 14 14 chr3 84371347 84371417 -143153161 - L2 LINE L2 -65 3207 3138 571 262 77 60 chr3 84371706 84371939 -143152639 - MIR SINE MIR -19 243 7 398 127 14 0 chr3 84372458 84372529 -143152049 + CT-rich Low_complexity Low_complexity 4 75 0 535 224 52 8 chr3 84372642 84372776 -143151802 + MER102b DNA MER1_type 54 193 -148 232 277 36 0 chr3 84372877 84372960 -143151618 + MER102b DNA MER1_type 206 291 -50 2078 100 4 0 chr3 84373219 84373500 -143151078 + AluSp SINE Alu 3 284 -29 516 284 158 11 chr3 84373511 84373701 -143150877 + MIR SINE MIR 34 251 -11 945 179 38 161 chr3 84373891 84373989 -143150589 - MLT1A1 LTR MaLR -34 398 290 2369 71 0 3 chr3 84373989 84374298 -143150280 - AluY SINE Alu -3 308 1 945 179 38 161 chr3 84374298 84374578 -143150000 - MLT1A1 LTR MaLR -142 290 1 196 171 0 24 chr3 84374580 84374621 -143149957 - MIR SINE MIR -102 160 121 515 243 224 7 chr3 84374805 84374957 -143149621 - MER5A DNA MER1_type -1 188 4 590 399 34 94 chr3 84374981 84375427 -143149151 + MLT1K LTR MaLR 166 584 -4 2208 198 54 72 chr3 84375448 84376018 -143148560 - MLT1F1 LTR MaLR 0 567 8 478 257 115 14 chr3 84376061 84376209 -143148369 + MIR3 SINE MIR 32 194 -14 183 80 0 0 chr3 84376615 84376640 -143147938 + (ATG)n Simple_repeat Simple_repeat 3 27 0 437 358 53 5 chr3 84376660 84376867 -143147711 - MIR SINE MIR -37 225 9 1740 174 3 0 chr3 84377026 84377324 -143147254 + AluSx SINE Alu 1 299 -13 1673 186 0 33 chr3 84428144 84428451 -143096127 + AluJb SINE Alu 1 297 -15 192 333 111 28 chr3 84428943 84429051 -143095527 + L2 LINE L2 3090 3206 -66 225 0 0 0 chr3 84429130 84429155 -143095423 + (T)n Simple_repeat Simple_repeat 1 25 0 637 184 56 73 chr3 84429191 84429479 -143095099 + MER33 DNA MER1_type 1 283 -41 23 0 0 0 chr3 84429511 84429534 -143095044 + AT_rich Low_complexity Low_complexity 1 23 0 1050 167 0 21 chr3 84429543 84429729 -143094849 - AluJo SINE Alu -11 301 120 191 265 92 99 chr3 84429999 84430293 -143094285 + L2 LINE L2 2836 3127 -145 713 231 13 13 chr3 84430319 84430475 -143094103 + MER5B DNA MER1_type 3 158 -20 191 226 196 69 chr3 84430492 84430594 -143093984 + L2 LINE L2 3156 3270 -2 366 162 0 0 chr3 84430643 84430717 -143093861 + (TGAA)n Simple_repeat Simple_repeat 3 76 0 537 308 47 23 chr3 84431541 84431755 -143092823 + MLT1K LTR MaLR 162 380 -208 185 0 40 0 chr3 84431787 84431812 -143092766 + (CAA)n Simple_repeat Simple_repeat 2 27 0 597 287 10 31 chr3 84431827 84432022 -143092556 + LTR16B LTR ERVL 1 191 -273 615 207 67 7 chr3 84432024 84432159 -143092419 - MLT1J LTR MaLR -367 144 2 207 0 0 0 chr3 84432596 84432619 -143091959 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 826 252 61 13 chr3 84432861 84433091 -143091487 + MIR SINE MIR 15 255 -7 544 224 143 20 chr3 84433567 84433812 -143090766 + ORSL DNA AcHobo 1 275 0 322 220 0 0 chr3 84433813 84433872 -143090706 - L2 LINE L2 0 3313 3255 180 0 0 0 chr3 84433995 84434015 -143090563 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 387 240 10 30 chr3 84434153 84434253 -143090325 + MIR SINE MIR 92 189 -73 798 163 180 0 chr3 84434254 84434426 -143090152 - MLT1D LTR MaLR 0 505 303 282 235 49 25 chr3 84434443 84434524 -143090054 + MLT1L LTR MaLR 120 202 -413 * 445 280 73 41 chr3 84434514 84434859 -143089719 + MLT1K LTR MaLR 240 613 -2 402 295 90 8 chr3 84435423 84435545 -143089033 + MIR3 SINE MIR 10 141 -67 713 200 26 0 chr3 84435545 84435700 -143088878 + MLT1F1 LTR MaLR 378 536 -31 570 168 21 0 chr3 84435700 84435795 -143088783 + MER2 DNA MER2_type 1 97 -248 207 274 0 0 chr3 84435948 84435999 -143088579 + MIR3 SINE MIR 152 202 -6 186 276 155 29 chr3 84436425 84436599 -143087979 - L2 LINE L2 -340 2974 2779 366 330 5 48 chr3 84437498 84437686 -143086892 - MIR SINE MIR -24 238 59 501 259 29 35 chr3 84437691 84437865 -143086713 - MER5B DNA MER1_type -1 177 5 806 195 69 0 chr3 84438001 84438175 -143086403 - MER5A DNA MER1_type 0 189 4 521 138 23 0 chr3 84438872 84438959 -143085619 + MSTA LTR MaLR 1 89 -339 2740 127 84 18 chr3 84438960 84439471 -143085107 - LTR10A LTR ERV1 -64 545 1 226 163 41 0 chr3 84439494 84439543 -143085035 - LTR10B LTR ERV1 -496 51 1 2019 127 12 19 chr3 84439543 84439867 -143084711 + MSTA LTR MaLR 71 392 -36 1423 170 0 0 chr3 84439868 84440091 -143084487 - AluSg/x SINE Alu -4 308 86 310 50 0 0 chr3 84440093 84440133 -143084445 + MSTA LTR MaLR 388 427 -1 521 254 73 38 chr3 84440135 84440540 -143084038 - LTR48B LTR ERV1 -76 620 38 2351 103 0 16 chr3 84441327 84441639 -143082939 + AluSx SINE Alu 1 307 -5 273 198 88 161 chr3 84441667 84441940 -143082638 - L1ME4a LINE L1 -1 6120 5868 1050 261 145 24 chr3 84442372 84442819 -143081759 + MLT1H LTR MaLR 1 547 -2 475 211 11 0 chr3 84442942 84443037 -143081541 - MLT1D LTR MaLR -118 387 292 862 198 0 0 chr3 84443155 84443322 -143081256 - L1MA10 LINE L1 0 6334 6168 2190 137 42 25 chr3 84443331 84443688 -143080890 + THE1B LTR MaLR 2 364 0 1400 218 19 25 chr3 84443775 84444092 -143080486 - L1ME4a LINE L1 -322 5844 5530 4375 141 38 52 chr3 84445003 84445799 -143078779 + LTR1 LTR ERV1 1 785 0 742 280 123 3 chr3 84445879 84446257 -143078321 - LTR16A LTR ERVL 0 450 1 364 279 20 54 chr3 84446397 84446544 -143078034 - MIR SINE MIR 0 262 121 330 263 88 0 chr3 84446862 84446942 -143077636 - L2 LINE L2 -18 3254 3168 2300 113 3 0 chr3 84447008 84447319 -143077259 - AluSx SINE Alu 0 312 1 1038 231 141 34 chr3 84447751 84448163 -143076415 - LTR16C LTR ERVL 0 491 36 397 252 90 9 chr3 84448165 84448276 -143076302 - MIR SINE MIR -111 151 32 2315 115 0 0 chr3 84448438 84448743 -143075835 - AluSx SINE Alu -7 305 1 2005 146 0 25 chr3 84449499 84449814 -143074764 - AluJb SINE Alu -5 307 1 196 308 46 31 chr3 84449817 84449882 -143074696 - MIR SINE MIR -193 69 4 194 308 0 0 chr3 84449920 84449972 -143074606 + MIR SINE MIR 156 207 -55 731 206 10 86 chr3 84450561 84450770 -143073808 - L1ME3A LINE L1 -10 6160 5968 1261 120 0 11 chr3 84450770 84450945 -143073633 - AluSx SINE Alu -19 293 121 935 108 0 29 chr3 84450988 84451127 -143073451 - AluSx SINE Alu -178 135 1 1444 206 18 21 chr3 84451130 84451465 -143073113 - L1ME3A LINE L1 -194 5976 5643 285 182 0 0 chr3 84451471 84451526 -143073052 + (TG)n Simple_repeat Simple_repeat 2 56 0 362 133 0 17 chr3 84451534 84451594 -143072984 - L1ME3A LINE L1 -541 5629 5571 6335 36 4 0 chr3 84451620 84452403 -143072175 - L1PA5 LINE L1 -1 6153 5368 304 224 0 0 chr3 84452399 84452457 -143072121 - L1ME3A LINE L1 -584 5586 5529 * 304 196 0 0 chr3 84452570 84452621 -143071957 - LTR67 LTR ERVL 0 557 507 1530 238 78 9 chr3 84453276 84453713 -143070865 - MLT1C LTR MaLR 0 467 1 380 255 78 71 chr3 84453927 84453990 -143070588 + MIR SINE MIR 4 65 -197 2363 113 0 0 chr3 84453990 84454301 -143070277 + AluSq SINE Alu 1 311 -2 380 255 78 71 chr3 84454301 84454492 -143070086 + MIR SINE MIR 65 260 -2 796 272 35 21 chr3 84455537 84455827 -143068751 - MER115 DNA AcHobo -26 667 374 405 81 0 0 chr3 84455830 84455892 -143068686 + (TC)n Simple_repeat Simple_repeat 1 62 0 804 268 47 70 chr3 84455895 84456279 -143068299 - MER115 DNA AcHobo -318 375 1 223 360 0 0 chr3 84457468 84457554 -143067024 + L2 LINE L2 2542 2627 -687 268 213 139 37 chr3 84457579 84457684 -143066894 + MLT1J LTR MaLR 27 142 -369 312 246 0 0 chr3 84457684 84457749 -143066829 - MLT1E LTR MaLR 0 593 529 2154 138 3 0 chr3 84457751 84458056 -143066522 + AluSx SINE Alu 1 306 -6 744 157 107 0 chr3 84458064 84458185 -143066393 + AluJo SINE Alu 2 135 -177 324 0 0 0 chr3 84458188 84458224 -143066354 + (CA)n Simple_repeat Simple_repeat 2 37 0 * 387 0 0 0 chr3 84458223 84458266 -143066312 + (TC)n Simple_repeat Simple_repeat 1 43 0 1434 236 83 41 chr3 84458266 84458677 -143065901 - MLT1E LTR MaLR -67 526 99 499 190 0 70 chr3 84458705 84458847 -143065731 + MLT1K LTR MaLR 443 574 -14 1331 161 28 0 chr3 84458963 84459181 -143065397 - MER58A DNA MER1_type 0 224 1 328 298 132 0 chr3 84459774 84459888 -143064690 + L2 LINE L2 3140 3268 -4 367 358 7 0 chr3 84460314 84460451 -143064127 + MIR SINE MIR 1 138 -124 264 345 0 0 chr3 84460882 84460969 -143063609 + MIR SINE MIR 162 248 -14 271 232 29 0 chr3 84461355 84461424 -143063154 + LTR16A1 LTR ERVL 385 455 -2 234 338 53 26 chr3 84461535 84461686 -143062892 - MIR3 SINE MIR -8 200 46 207 306 32 0 chr3 84461662 84461724 -143062854 + L2 LINE L2 3209 3272 0 * 500 196 21 0 chr3 84462083 84462180 -143062398 - MER5A DNA MER1_type -80 109 11 212 250 42 0 chr3 84462216 84462264 -143062314 + L2 LINE L2 2985 3034 -238 413 269 184 0 chr3 84462484 84462625 -143061953 - MIR SINE MIR -33 229 63 840 160 0 0 chr3 84462645 84462770 -143061808 + FLAM_A SINE Alu 2 126 -7 1032 298 70 24 chr3 84463561 84464017 -143060561 + L2 LINE L2 2836 3312 -1 299 212 46 6 chr3 84464016 84464102 -143060476 - MIR SINE MIR -87 121 74 * 213 229 193 57 chr3 84464275 84464415 -143060163 - MIR SINE MIR -47 215 57 392 236 249 6 chr3 84464590 84464755 -143059823 + MIR SINE MIR 46 250 -12 195 170 50 160 chr3 84464978 84465078 -143059500 + L2 LINE L2 3221 3309 -4 * 209 278 185 0 chr3 84465056 84465207 -143059371 - L2 LINE L2 -326 2987 2809 1079 285 103 33 chr3 84465858 84465968 -143058610 + MLT1K LTR MaLR 13 114 -474 1570 138 0 13 chr3 84465968 84466200 -143058378 - AluJb SINE Alu -83 229 1 1079 285 103 33 chr3 84466200 84466604 -143057974 + MLT1K LTR MaLR 114 563 -25 545 311 31 5 chr3 84467581 84467777 -143056801 + LTR16C LTR ERVL 89 289 -202 475 71 14 0 chr3 84467893 84467963 -143056615 - AluSp/q SINE Alu -5 308 238 690 193 37 0 chr3 84468530 84468665 -143055913 - FLAM_C SINE Alu -1 142 3 42 36 0 0 chr3 84468681 84468737 -143055841 + AT_rich Low_complexity Low_complexity 1 56 0 549 259 26 0 chr3 84468754 84468870 -143055708 - FLAM_A SINE Alu -14 119 1 405 0 0 0 chr3 84469267 84469312 -143055266 + (TC)n Simple_repeat Simple_repeat 2 46 0 334 241 99 73 chr3 84469489 84469680 -143054898 - MLT1K LTR MaLR 0 588 393 544 227 34 92 chr3 84469769 84469976 -143054602 - MLT1K LTR MaLR -393 195 1 382 249 21 98 chr3 84470602 84470795 -143053783 + L1ME4a LINE L1 5708 5885 -236 2249 81 7 13 chr3 84470814 84471123 -143053455 - AluSq SINE Alu -6 307 1 625 281 11 22 chr3 84471160 84471345 -143053233 + MLT1A2 LTR MaLR 1 183 -191 1625 243 74 14 chr3 84471352 84471785 -143052793 - MLT1E LTR MaLR -134 459 1 1991 116 3 23 chr3 84471959 84472262 -143052316 - AluSx SINE Alu -15 297 1 1594 199 0 0 chr3 84472300 84472581 -143051997 - AluJo SINE Alu -30 282 2 687 244 14 62 chr3 84472588 84472797 -143051781 - L1ME3A LINE L1 -5 6165 5967 262 203 0 17 chr3 84473207 84473266 -143051312 - MER33 DNA MER1_type 0 363 306 1414 189 0 49 chr3 84473269 84473576 -143051002 + AluJo SINE Alu 3 294 -18 721 181 56 73 chr3 84473648 84473936 -143050642 - MER33 DNA MER1_type -41 283 1 207 0 0 0 chr3 84473974 84473997 -143050581 + (A)n Simple_repeat Simple_repeat 1 23 0 193 333 111 28 chr3 84474076 84474184 -143050394 - L2 LINE L2 -66 3206 3090 869 137 0 22 chr3 84474705 84474844 -143049734 + FLAM_C SINE Alu 1 136 -7 2020 125 0 22 chr3 84474960 84475279 -143049299 - AluSx SINE Alu 0 312 1 453 307 50 17 chr3 84475305 84475484 -143049094 + MLT1I LTR MaLR 225 409 0 2170 82 0 0 chr3 84475711 84476018 -143048560 - AluSg SINE Alu 0 307 1 1432 161 40 118 chr3 84476255 84476298 -143048280 + MLT1A1 LTR MaLR 1 46 -319 2053 110 10 3 chr3 84476298 84476590 -143047988 - AluSx SINE Alu -18 294 1 1432 161 40 118 chr3 84476590 84476926 -143047652 + MLT1A1 LTR MaLR 46 350 -15 556 280 103 92 chr3 84476995 84477591 -143046987 + L2 LINE L2 2677 3271 -1 2310 89 0 16 chr3 84477967 84478283 -143046295 + AluSp SINE Alu 1 311 -2 243 242 0 0 chr3 84478500 84478562 -143046016 - L1MA10 LINE L1 -1 6333 6272 356 183 9 73 chr3 84478567 84478681 -143045897 - MIR SINE MIR -73 135 61 193 306 204 14 chr3 84479087 84479303 -143045275 + MIR SINE MIR 2 258 -4 258 272 9 53 chr3 84479847 84479961 -143044617 + CT-rich Low_complexity Low_complexity 6 114 0 1795 167 32 60 chr3 84479971 84480373 -143044205 - MLT1C LTR MaLR -5 462 72 207 204 0 0 chr3 84480374 84480418 -143044160 + T-rich Low_complexity Low_complexity 1 44 0 195 226 21 21 chr3 84480564 84480657 -143043921 + CT-rich Low_complexity Low_complexity 5 97 0 398 197 105 20 chr3 84480940 84481047 -143043531 - L1MC5 LINE L1 -32 7929 7804 279 0 0 0 chr3 84481047 84481078 -143043500 + (TC)n Simple_repeat Simple_repeat 2 32 0 398 197 105 20 chr3 84481078 84481122 -143043456 - L1MC5 LINE L1 -157 7804 7765 590 115 0 52 chr3 84481124 84481220 -143043358 + AluSq/x SINE Alu 51 141 -171 2088 112 0 7 chr3 84481221 84481526 -143043052 + AluSx SINE Alu 1 303 -9 984 159 32 32 chr3 84481536 84481725 -143042853 - L1MC1 LINE L1 -6 6327 6139 1851 169 0 3 chr3 84481761 84482074 -143042504 - AluJo SINE Alu 0 312 1 370 214 83 0 chr3 84482172 84482256 -143042322 + L1MC5 LINE L1 7272 7362 -599 204 262 7 121 chr3 84482305 84482454 -143042124 - MIR SINE MIR -42 220 89 * 344 246 0 0 chr3 84482447 84482516 -143042062 + MIR SINE MIR 32 100 -108 358 256 0 105 chr3 84482547 84482638 -143041940 - MER94 DNA DNA -15 119 41 2003 107 0 4 chr3 84482638 84482958 -143041620 + AluSx SINE Alu 3 321 0 358 256 0 105 chr3 84482958 84482996 -143041582 - MER94 DNA DNA -93 41 1 643 263 17 11 chr3 84483032 84483207 -143041371 + MER5B DNA MER1_type 1 176 -2 202 259 17 17 chr3 84483244 84483302 -143041276 + MER5A DNA MER1_type 28 85 -104 925 199 25 130 chr3 84483313 84483390 -143041188 - MLT1A1 LTR MaLR 0 365 282 1789 140 37 3 chr3 84483390 84483690 -143040888 + AluSx SINE Alu 3 312 0 925 199 25 130 chr3 84483690 84483928 -143040650 - MLT1A1 LTR MaLR -83 282 83 294 113 0 38 chr3 84484068 84484121 -143040457 - MLT1A1 LTR MaLR -377 51 1 186 263 70 18 chr3 84484138 84484195 -143040383 + MER5A DNA MER1_type 128 187 -2 803 159 0 8 chr3 84484293 84484425 -143040153 - FRAM SINE Alu -2 174 44 369 187 37 93 chr3 84484425 84484532 -143040046 - MIR SINE MIR -120 142 42 1954 140 0 9 chr3 84484739 84485054 -143039524 + AluJo SINE Alu 1 312 0 730 270 152 52 chr3 84485204 84485670 -143038908 - MLT1H LTR MaLR -23 526 14 508 278 45 0 chr3 84485807 84485940 -143038638 - L2 LINE L2 0 3313 3175 1364 120 14 10 chr3 84486187 84486395 -143038183 - MER2 DNA MER2_type -135 210 2 1931 197 114 0 chr3 84486396 84486808 -143037770 - MLT1F1 LTR MaLR -31 536 78 1348 128 0 0 chr3 84486833 84487028 -143037550 - AluSg/x SINE Alu -24 286 92 314 177 32 0 chr3 84487028 84487090 -143037488 - MLT1F1 LTR MaLR -503 64 1 461 306 11 38 chr3 84487160 84487343 -143037235 - MER5A DNA MER1_type -1 188 11 195 294 20 0 chr3 84487317 84487368 -143037210 + MER5A DNA MER1_type 115 166 -23 * 385 274 24 8 chr3 84487549 84487673 -143036905 - MER117 DNA MER1_type -70 127 2 320 204 106 18 chr3 84488694 84488807 -143035771 - L1ME4a LINE L1 -49 6072 5950 1091 216 0 10 chr3 84488860 84489064 -143035514 - MER20 DNA MER1_type -17 202 1 2146 110 0 22 chr3 84489068 84489387 -143035191 + AluSx SINE Alu 1 312 0 378 0 0 0 chr3 84489403 84489445 -143035133 + (CA)n Simple_repeat Simple_repeat 2 43 0 329 259 105 18 chr3 84489698 84489846 -143034732 + MIR SINE MIR 78 248 -14 269 244 35 52 chr3 84489888 84490003 -143034575 - L1ME4a LINE L1 -297 5824 5712 1757 148 7 26 chr3 84490462 84490767 -143033811 + AluJb SINE Alu 11 309 -3 260 244 167 54 chr3 84490889 84491057 -143033521 + MIR SINE MIR 58 244 -18 446 259 53 35 chr3 84491098 84491268 -143033310 + MIR3 SINE MIR 30 202 -6 391 322 39 22 chr3 84491407 84491587 -143032991 - MIR SINE MIR 0 262 80 502 286 143 0 chr3 84491622 84491783 -143032795 - MER5A DNA MER1_type 0 189 6 589 183 0 0 chr3 84492925 84493029 -143031549 + U13 snRNA snRNA 1 104 0 757 254 6 0 chr3 84493233 84493410 -143031168 + MER45A DNA AcHobo 1 178 0 608 252 8 34 chr3 84493880 84494114 -143030464 + L1MC4 LINE L1 7689 7916 -126 685 217 8 0 chr3 84494427 84494556 -143030022 + AluJo SINE Alu 2 131 -181 195 47 23 47 chr3 84494589 84494632 -143029946 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 655 241 181 11 chr3 84494826 84495091 -143029487 - LTR16C LTR ERVL -2 489 180 344 296 30 15 chr3 84495172 84495307 -143029271 - L2 LINE L2 0 3272 3136 1947 146 0 0 chr3 84495722 84496031 -143028547 + AluSx SINE Alu 1 309 -3 740 163 31 75 chr3 84496490 84496650 -143027928 + AluJo SINE Alu 137 289 -23 1163 139 0 0 chr3 84496656 84496814 -143027764 + U1 snRNA snRNA 6 163 -2 205 191 48 0 chr3 84496818 84496881 -143027697 + A-rich Low_complexity Low_complexity 2 67 0 1911 156 7 0 chr3 84497240 84497548 -143027030 - AluSx SINE Alu -2 310 1 982 254 75 17 chr3 84498230 84498479 -143026099 + MER5C DNA MER1_type 13 283 -41 2063 120 0 0 chr3 84498479 84498779 -143025799 + AluSx SINE Alu 1 300 -12 982 254 75 17 chr3 84498779 84498824 -143025754 + MER5C DNA MER1_type 283 324 0 207 146 42 0 chr3 84498855 84498903 -143025675 + (TG)n Simple_repeat Simple_repeat 1 50 0 1939 148 0 0 chr3 84500124 84500422 -143024156 - AluJb SINE Alu -14 298 1 763 236 80 77 chr3 84500451 84500790 -143023788 + MLT1H LTR MaLR 208 547 -2 186 43 0 0 chr3 84500792 84500815 -143023763 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 253 228 53 0 chr3 84500817 84500874 -143023704 - L2 LINE L2 0 3313 3254 235 306 93 28 chr3 84500892 84501000 -143023578 + L2 LINE L2 3153 3267 -5 338 234 21 21 chr3 84501027 84501121 -143023457 + L1ME LINE L1 5579 5672 -449 2190 176 88 5 chr3 84501556 84501976 -143022602 - MLT2C2 LTR ERVL -8 456 2 259 211 40 26 chr3 84502041 84502117 -143022461 + L1ME4a LINE L1 5944 6020 -101 1967 234 108 2 chr3 84502232 84502706 -143021872 - MER90 LTR ERV1 0 614 91 1285 136 39 0 chr3 84503051 84503257 -143021321 - AluSx SINE Alu -13 299 86 705 117 0 0 chr3 84503492 84503586 -143020992 - AluSx SINE Alu -218 95 2 338 205 8 68 chr3 84503855 84503972 -143020606 + L1ME LINE L1 5708 5817 -304 1662 166 38 0 chr3 84504070 84504360 -143020218 - AluJo SINE Alu -5 307 7 679 168 0 0 chr3 84504561 84504662 -143019916 + AluJ/FLAM SINE Alu 2 102 -210 450 276 52 0 chr3 84504775 84504891 -143019687 - L2 LINE L2 0 3313 3192 324 310 281 5 chr3 84505175 84505378 -143019200 + MIR SINE MIR 2 260 -2 276 216 103 21 chr3 84505605 84505702 -143018876 - MIR SINE MIR -57 205 101 1108 222 65 103 chr3 84506445 84507014 -143017564 - MLT1H1 LTR MaLR -9 546 1 395 248 14 170 chr3 84507909 84508127 -143016451 - MIR SINE MIR 0 262 79 2077 126 0 0 chr3 84508139 84508441 -143016137 + AluSx SINE Alu 11 312 0 239 277 0 15 chr3 84508451 84508516 -143016062 - MIR SINE MIR -170 92 29 510 192 225 33 chr3 84508517 84508668 -143015910 + MER5A DNA MER1_type 4 183 -6 1180 257 129 39 chr3 84509002 84509423 -143015155 - L1ME2 LINE L1 -85 6079 5603 1709 154 6 46 chr3 84509423 84509747 -143014831 - AluSx SINE Alu -1 311 1 1180 257 129 39 chr3 84509747 84509835 -143014743 - L1ME2 LINE L1 -561 5603 5524 803 204 134 3 chr3 84510521 84510758 -143013820 - L1MD3 LINE L1 0 8042 7798 339 229 51 34 chr3 84510838 84510956 -143013622 - L1ME3 LINE L1 -83 6079 5960 * 607 267 47 47 chr3 84510948 84511184 -143013394 - L1MC4 LINE L1 -290 7752 7517 238 259 86 60 chr3 84511214 84511330 -143013248 + L2 LINE L2 2891 3009 -263 777 164 0 0 chr3 84511435 84511557 -143013021 + FLAM_C SINE Alu 7 128 -15 1393 258 64 20 chr3 84511964 84512356 -143012222 - MLT1G1 LTR MaLR -185 410 2 289 308 0 0 chr3 84512358 84512436 -143012142 - MIR SINE MIR -182 80 3 691 264 67 0 chr3 84512961 84513139 -143011439 - MIR SINE MIR -10 252 63 928 137 0 16 chr3 84513174 84513357 -143011221 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 4094 126 30 16 chr3 84514245 84514814 -143009764 - Tigger3(Golem) DNA MER2_type 0 3029 2448 2016 116 3 22 chr3 84514814 84515125 -143009453 + AluSx SINE Alu 1 305 -7 4094 126 30 16 chr3 84515125 84515223 -143009355 - Tigger3(Golem) DNA MER2_type -581 2448 2353 842 220 23 6 chr3 84515227 84515404 -143009174 + AluJo SINE Alu 38 217 -95 586 122 26 0 chr3 84515533 84515648 -143008930 + GA-rich Low_complexity Low_complexity 3 120 0 452 291 37 92 chr3 84515648 84515897 -143008681 - L2 LINE L2 -63 3250 3016 2134 115 7 0 chr3 84515897 84516202 -143008376 - AluSx SINE Alu -5 307 1 452 291 37 92 chr3 84516202 84516223 -143008355 - L2 LINE L2 -297 3016 2995 392 277 88 0 chr3 84516445 84516582 -143007996 + MIR SINE MIR 1 149 -113 308 191 71 0 chr3 84517377 84517461 -143007117 - LTR37B LTR ERV1 -1 467 378 1112 228 24 102 chr3 84517461 84517912 -143006666 - LTR37B LTR ERV1 -47 421 6 357 273 36 138 chr3 84518074 84518327 -143006251 + L2 LINE L2 2994 3220 -52 * 764 144 42 0 chr3 84518326 84518470 -143006108 + GA-rich Low_complexity Low_complexity 4 157 -20 1389 164 42 87 chr3 84518470 84518611 -143005967 + AluJo SINE Alu 5 151 -151 2181 80 0 7 chr3 84518611 84518898 -143005680 + AluSc SINE Alu 1 285 -24 1389 164 42 87 chr3 84518898 84519067 -143005511 + AluJo SINE Alu 151 301 -1 764 144 42 0 chr3 84519067 84519089 -143005489 + GA-rich Low_complexity Low_complexity 157 177 0 201 176 0 0 chr3 84519893 84519927 -143004651 + T-rich Low_complexity Low_complexity 1 34 0 2136 112 0 0 chr3 84520089 84520392 -143004186 - AluSx SINE Alu -9 303 1 249 173 58 19 chr3 84520435 84520487 -143004091 + MLT1K LTR MaLR 180 233 -355 609 179 8 8 chr3 84520903 84521020 -143003558 + FRAM SINE Alu 58 174 -2 421 118 0 29 chr3 84521036 84521104 -143003474 - Tigger3(Golem) DNA MER2_type -687 2342 2277 * 767 148 0 0 chr3 84521095 84521203 -143003375 - Tigger3(Golem) DNA MER2_type -2921 108 1 760 235 30 45 chr3 84521230 84521430 -143003148 - LTR16C LTR ERVL -4 487 291 26 30 0 0 chr3 84521529 84521562 -143003016 + AT_rich Low_complexity Low_complexity 1 33 0 510 287 102 0 chr3 84522968 84523125 -143001453 - MIR SINE MIR -89 173 1 1526 249 27 49 chr3 84523534 84524051 -143000527 + MLT1H LTR MaLR 3 549 0 180 143 0 29 chr3 84525000 84525035 -142999543 - L2 LINE L2 -166 3147 3114 379 305 94 0 chr3 84525100 84525228 -142999350 - L2 LINE L2 -1 3271 3132 307 329 79 0 chr3 84525426 84525566 -142999012 + MIR SINE MIR 11 161 -101 846 271 56 70 chr3 84525593 84526036 -142998542 + MLT1J LTR MaLR 37 473 -38 273 247 0 37 chr3 84526073 84526154 -142998424 + MIR SINE MIR 164 241 -21 1694 191 10 59 chr3 84526205 84526494 -142998084 - MLT1A2 LTR MaLR -1 373 106 1711 145 26 10 chr3 84526494 84526798 -142997780 + AluJo SINE Alu 1 309 -3 1694 191 10 59 chr3 84526798 84526900 -142997678 - MLT1A2 LTR MaLR -268 106 1 455 243 186 36 chr3 84527309 84527719 -142996859 - LTR33 LTR ERVL 0 521 23 509 144 0 22 chr3 84527730 84527820 -142996758 - MIR SINE MIR -66 196 109 21 0 0 0 chr3 84527838 84527859 -142996719 + AT_rich Low_complexity Low_complexity 1 21 0 203 338 0 0 chr3 84527990 84528058 -142996520 - MIR SINE MIR -91 171 104 186 219 0 0 chr3 84528050 84528082 -142996496 + L3 LINE CR1 1519 1550 -27 * 867 301 77 24 chr3 84528452 84528968 -142995610 - MLT1K LTR MaLR -1 587 9 405 39 0 0 chr3 84529537 84529588 -142994990 + (TGAA)n Simple_repeat Simple_repeat 2 52 0 2033 94 9 85 chr3 84529788 84529979 -142994599 - AluSx SINE Alu -7 305 148 1921 148 0 16 chr3 84529979 84530289 -142994289 - AluSx SINE Alu -5 307 3 2033 94 9 85 chr3 84530289 84530427 -142994151 - AluSx SINE Alu -164 148 1 403 319 28 85 chr3 84530575 84530717 -142993861 + MIR SINE MIR 14 146 -62 210 252 183 26 chr3 84530755 84530870 -142993708 + L2 LINE L2 2457 2589 -725 1098 287 121 32 chr3 84531013 84531636 -142992942 + L2 LINE L2 2617 3308 -5 180 176 0 0 chr3 84531637 84531671 -142992907 + GA-rich Low_complexity Low_complexity 2 35 0 180 250 0 148 chr3 84531671 84531745 -142992833 + MIR SINE MIR 154 237 -25 2216 87 0 0 chr3 84531745 84532031 -142992547 + AluSx SINE Alu 1 286 -26 333 68 0 0 chr3 84532031 84532075 -142992503 + (CAAT)n Simple_repeat Simple_repeat 2 45 0 180 250 0 148 chr3 84532075 84532127 -142992451 + MIR SINE MIR 235 262 0 336 188 0 0 chr3 84532160 84532229 -142992349 + (CA)n Simple_repeat Simple_repeat 1 69 0 1266 165 0 18 chr3 84532936 84533160 -142991418 - AluJb SINE Alu -8 304 85 2020 115 0 14 chr3 84533164 84533510 -142991068 - AluSx SINE Alu 0 342 1 769 243 117 22 chr3 84533776 84533998 -142990580 - MIR SINE MIR -12 250 8 1700 144 0 52 chr3 84534304 84534630 -142989948 - AluJo SINE Alu -3 309 1 887 229 103 9 chr3 84534992 84535215 -142989363 - MIR SINE MIR -6 256 13 215 299 15 0 chr3 84535671 84535738 -142988840 - L2 LINE L2 -212 3060 2993 1879 107 0 31 chr3 84535845 84536166 -142988412 + AluSx SINE Alu 1 312 0 508 245 90 87 chr3 84536168 84536407 -142988171 + MLT1L LTR MaLR 111 435 -180 261 329 41 81 chr3 84536633 84536873 -142987705 - L2 LINE L2 -348 2966 2739 231 114 0 0 chr3 84536873 84536908 -142987670 + (TG)n Simple_repeat Simple_repeat 2 36 0 261 329 41 81 chr3 84536908 84536962 -142987616 - L2 LINE L2 -575 2739 2684 995 243 35 44 chr3 84536996 84537313 -142987265 + L1ME3 LINE L1 5542 5855 -307 1272 264 50 41 chr3 84537362 84537550 -142987028 - LTR16B LTR ERVL -17 447 262 1989 116 38 0 chr3 84537550 84537843 -142986735 - AluSx SINE Alu -8 304 1 1272 264 50 41 chr3 84537843 84538097 -142986481 - LTR16B LTR ERVL -202 262 1 448 222 12 102 chr3 84538119 84538286 -142986292 + L1ME3 LINE L1 5928 6079 -83 267 313 88 0 chr3 84538351 84538431 -142986147 - L2 LINE L2 -9 3263 3177 22004 37 1 2 chr3 84540003 84543438 -142981140 + L1PA5 LINE L1 2714 6154 0 1382 103 0 15 chr3 84543438 84543641 -142980937 + AluSq SINE Alu 104 303 -10 2146 182 90 80 chr3 84543641 84544263 -142980315 + MER63 DNA MER1_type 433 1060 0 1538 187 72 29 chr3 84544419 84544793 -142979785 - MLT1B LTR MaLR 0 390 1 896 230 15 20 chr3 84545054 84545254 -142979324 + MIR SINE MIR 8 206 -56 181 333 36 36 chr3 84545353 84545491 -142979087 + L2 LINE L2 3176 3313 0 1780 166 3 50 chr3 84545607 84545673 -142978905 - L1MB8 LINE L1 -7 6171 6103 2276 71 0 10 chr3 84545673 84545969 -142978609 - AluSc SINE Alu -16 293 1 1780 166 3 50 chr3 84545969 84546263 -142978315 - L1MB8 LINE L1 -75 6103 5828 1695 241 54 11 chr3 84546339 84546804 -142977774 + L1ME1 LINE L1 5659 6143 -23 1034 138 6 18 chr3 84546836 84547003 -142977575 - AluJo SINE Alu -143 169 5 232 272 87 33 chr3 84547030 84547122 -142977456 - MIR SINE MIR -14 248 152 1231 206 25 72 chr3 84547123 84547444 -142977134 + MLT1A2 LTR MaLR 1 306 -68 1231 162 5 0 chr3 84547447 84547644 -142976934 - Tigger2 DNA MER2_type -10 2708 2511 558 150 31 131 chr3 84547753 84547829 -142976749 + MLT1A2 LTR MaLR 231 313 -61 2733 116 32 25 chr3 84547829 84548065 -142976513 - Tigger2a DNA MER2_type -2274 434 192 1840 89 8 4 chr3 84548065 84548322 -142976256 + AluSp SINE Alu 45 302 -11 2733 116 32 25 chr3 84548322 84548516 -142976062 - Tigger2a DNA MER2_type -2516 192 1 558 150 31 131 chr3 84548516 84548532 -142976046 + MLT1A2 LTR MaLR 313 329 -45 1825 158 7 3 chr3 84548532 84548842 -142975736 - AluJo SINE Alu -1 311 1 558 150 31 131 chr3 84548842 84548908 -142975670 + MLT1A2 LTR MaLR 329 374 0 214 280 0 0 chr3 84548908 84548958 -142975620 - MIR SINE MIR -107 155 106 685 283 92 29 chr3 84549116 84549431 -142975147 + MLT1K LTR MaLR 168 502 -86 529 341 62 4 chr3 84549800 84550026 -142974552 + MIR SINE MIR 21 259 -3 2336 60 40 0 chr3 84550298 84550596 -142973982 - AluY SINE Alu -1 310 1 263 122 20 0 chr3 84550623 84550672 -142973906 + MIR SINE MIR 165 214 -48 596 257 73 34 chr3 84550695 84550901 -142973677 - MIR SINE MIR -28 234 21 282 217 14 0 chr3 84551102 84551171 -142973407 - Charlie8 DNA MER1_type -2251 166 97 466 231 17 17 chr3 84551743 84551860 -142972718 - MIR SINE MIR -123 139 23 591 273 123 43 chr3 84551942 84552156 -142972422 + Charlie8 DNA MER1_type 4 243 -98 1936 110 0 7 chr3 84552156 84552488 -142972090 + AluSg SINE Alu 1 330 0 591 273 123 43 chr3 84552488 84552525 -142972053 + Charlie8 DNA MER1_type 243 276 -65 2121 127 61 48 chr3 84552650 84553028 -142971550 - MLT1B LTR MaLR -7 383 1 2321 77 0 0 chr3 84553283 84553582 -142970996 + AluY SINE Alu 1 299 -12 852 213 28 28 chr3 84553645 84553677 -142970901 + LTR16C LTR ERVL 254 285 -206 2674 155 102 10 chr3 84553677 84554188 -142970390 + MER74A LTR ERVL 1 558 0 852 213 28 28 chr3 84554188 84554366 -142970212 + LTR16C LTR ERVL 284 464 -27 197 227 0 0 chr3 84554468 84554512 -142970066 + L2 LINE L2 3262 3305 -8 1498 182 29 11 chr3 84554518 84554798 -142969780 + AluJo SINE Alu 6 290 -22 784 241 49 10 chr3 84555188 84555391 -142969187 + MIR SINE MIR 40 250 -12 555 303 12 0 chr3 84556036 84556198 -142968380 - MER117 DNA MER1_type -19 178 15 188 196 59 0 chr3 84556530 84556581 -142967997 + L2 LINE L2 3256 3309 -4 271 174 193 28 chr3 84556617 84556726 -142967852 + L1ME4a LINE L1 5527 5653 -468 812 86 9 0 chr3 84556727 84556843 -142967735 + AluSp/q SINE Alu 190 306 -7 1513 122 13 25 chr3 84556844 84557082 -142967496 - LTR43 LTR ERV1 -367 235 1 293 272 128 28 chr3 84557085 84557375 -142967203 + L1ME4a LINE L1 5797 6115 -6 983 161 0 0 chr3 84557394 84557549 -142967029 + FRAM SINE Alu 1 154 -22 34 0 0 0 chr3 84557556 84557590 -142966988 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr3 84557606 84557632 -142966946 + AT_rich Low_complexity Low_complexity 1 26 0 498 301 39 48 chr3 84557767 84557996 -142966582 - MIR SINE MIR -19 243 17 2000 147 0 0 chr3 84558620 84558932 -142965646 - AluSx SINE Alu 0 312 1 341 308 98 8 chr3 84559078 84559211 -142965367 + MIR3 SINE MIR 41 185 -23 214 137 0 59 chr3 84559212 84559263 -142965315 + (TTCC)n Simple_repeat Simple_repeat 3 50 0 856 245 209 17 chr3 84559399 84559853 -142964725 + MLT1H1 LTR MaLR 13 555 0 470 302 42 56 chr3 84559853 84560003 -142964575 + MIR SINE MIR 47 195 -67 1981 135 3 6 chr3 84560003 84560314 -142964264 + AluJb SINE Alu 1 310 -2 470 302 42 56 chr3 84560314 84560378 -142964200 + MIR SINE MIR 195 258 -4 243 262 16 0 chr3 84561105 84561166 -142963412 - L2 LINE L2 0 3272 3211 1278 249 144 69 chr3 84561226 84561273 -142963305 + L1ME3A LINE L1 5453 5495 -675 2034 107 0 3 chr3 84561273 84561564 -142963014 - AluSg SINE Alu -20 290 1 1278 249 144 69 chr3 84561564 84562184 -142962394 + L1ME3A LINE L1 5495 6170 0 617 124 11 0 chr3 84562194 84562283 -142962295 + 5S rRNA rRNA 1 90 -31 326 285 79 36 chr3 84562296 84562461 -142962117 + MIR SINE MIR 88 259 -3 801 160 23 0 chr3 84562461 84562592 -142961986 + AluJb SINE Alu 1 134 -178 22 0 0 0 chr3 84562668 84562690 -142961888 + AT_rich Low_complexity Low_complexity 1 22 0 2317 83 0 0 chr3 84563554 84563854 -142960724 + AluSx SINE Alu 1 300 -12 374 358 42 0 chr3 84564184 84564374 -142960204 - MIR SINE MIR -17 245 48 2310 82 3 0 chr3 84564623 84564929 -142959649 + AluY SINE Alu 1 307 -4 375 252 63 31 chr3 84564929 84565088 -142959490 + L1ME4a LINE L1 5732 5895 -226 210 37 0 0 chr3 84565099 84565126 -142959452 + (TG)n Simple_repeat Simple_repeat 2 28 0 223 275 62 25 chr3 84565406 84565486 -142959092 + MER5A DNA MER1_type 5 87 -102 2117 95 3 7 chr3 84565518 84565824 -142958754 - AluY SINE Alu -6 305 1 730 263 54 5 chr3 84565824 84566048 -142958530 - MIR SINE MIR -16 246 12 226 284 0 30 chr3 84566054 84566121 -142958457 + MER5A DNA MER1_type 112 176 -13 596 93 12 0 chr3 84566189 84566275 -142958303 + AluS SINE Alu 2 88 -224 22720 75 1 5 chr3 84566375 84569314 -142955264 - L1P LINE L1 -3207 2939 11 936 103 0 0 chr3 84569320 84569437 -142955141 - AluSq/x SINE Alu -196 117 1 1051 227 99 0 chr3 84569437 84569719 -142954859 - MER63 DNA MER1_type -751 310 1 2188 204 52 14 chr3 84569988 84570543 -142954035 + L1ME1 LINE L1 5586 6161 -5 623 228 108 0 chr3 84570557 84570715 -142953863 + MIR SINE MIR 75 249 -13 407 159 14 0 chr3 84570716 84570785 -142953793 - MER44D DNA MER2_type 0 605 536 2196 120 17 0 chr3 84570789 84571115 -142953463 - AluSx SINE Alu 0 335 5 1081 83 0 0 chr3 84571150 84571282 -142953296 - AluY SINE Alu -179 132 1 1241 155 20 92 chr3 84571283 84571587 -142952991 - MER44D DNA MER2_type -57 552 1 355 198 0 93 chr3 84571644 84571730 -142952848 - L2 LINE L2 0 3313 3236 603 146 164 0 chr3 84571731 84571841 -142952737 + FLAM_C SINE Alu 2 129 -14 194 263 50 71 chr3 84571983 84572082 -142952496 + MER5A DNA MER1_type 30 126 -63 3127 132 102 2 chr3 84572347 84572917 -142951661 + L1MA6 LINE L1 5674 6300 0 384 288 55 52 chr3 84572932 84573146 -142951432 - MIR SINE MIR -16 246 34 908 272 104 37 chr3 84573167 84573571 -142951007 - L2 LINE L2 0 3313 2883 484 254 172 44 chr3 84573575 84574015 -142950563 + MLT1G1 LTR MaLR 5 595 0 271 258 31 21 chr3 84574015 84574112 -142950466 - L2 LINE L2 -426 2888 2791 225 159 0 0 chr3 84574138 84574182 -142950396 + CT-rich Low_complexity Low_complexity 1 44 0 1560 174 116 0 chr3 84574182 84574457 -142950121 - AluJb SINE Alu -5 307 1 1732 294 77 41 chr3 84574465 84574511 -142950067 - L2 LINE L2 -537 2777 2734 2126 101 42 0 chr3 84574511 84574798 -142949780 + AluSx SINE Alu 1 299 -13 1732 294 77 41 chr3 84574798 84575598 -142948980 - L2 LINE L2 -580 2734 1901 2085 154 0 0 chr3 84575884 84576196 -142948382 + AluSx SINE Alu 1 312 0 297 68 0 0 chr3 84576219 84576263 -142948315 + (GA)n Simple_repeat Simple_repeat 2 45 0 696 209 0 0 chr3 84576315 84576444 -142948134 + FLAM_C SINE Alu 13 141 -2 1061 130 15 60 chr3 84576533 84576733 -142947845 + MER20 DNA MER1_type 29 219 0 384 266 0 0 chr3 84577378 84577536 -142947042 + (CCA)n Simple_repeat Simple_repeat 1 158 0 333 283 0 0 chr3 84577551 84577731 -142946847 + (CCA)n Simple_repeat Simple_repeat 1 180 0 259 222 0 0 chr3 84577744 84577798 -142946780 + (CACCAT)n Simple_repeat Simple_repeat 4 57 0 488 241 0 6 chr3 84577800 84577970 -142946608 + (CCA)n Simple_repeat Simple_repeat 3 171 0 380 90 64 0 chr3 84578741 84578819 -142945759 + CT-rich Low_complexity Low_complexity 1 83 0 233 262 107 43 chr3 84579287 84579460 -142945118 - MIR SINE MIR -25 237 38 636 278 89 0 chr3 84579921 84580090 -142944488 + MIR SINE MIR 79 262 0 897 143 0 0 chr3 84580186 84580312 -142944266 + AluJb SINE Alu 1 126 -186 573 208 35 46 chr3 84580831 84581004 -142943574 - L1MC5 LINE L1 -184 7777 7607 24 0 0 0 chr3 84581758 84581782 -142942796 + AT_rich Low_complexity Low_complexity 1 24 0 438 293 75 11 chr3 84581931 84582105 -142942473 + LTR16C LTR ERVL 243 427 -64 275 212 15 0 chr3 84582170 84582236 -142942342 + LTR16C LTR ERVL 420 486 -5 723 191 8 0 chr3 84582291 84582422 -142942156 - FLAM_C SINE Alu 0 133 2 24 0 0 0 chr3 84582563 84582587 -142941991 + AT_rich Low_complexity Low_complexity 1 24 0 338 252 45 98 chr3 84582905 84583086 -142941492 + L1ME4a LINE L1 5815 5977 -144 2361 106 0 3 chr3 84583086 84583389 -142941189 + AluSx SINE Alu 1 302 -10 338 252 45 98 chr3 84583389 84583493 -142941085 + L1ME4a LINE L1 5977 6085 -36 416 273 56 7 chr3 84583932 84584075 -142940503 - MER5A DNA MER1_type 0 189 40 448 290 115 5 chr3 84584209 84584409 -142940169 - MIR SINE MIR -13 249 28 210 258 32 118 chr3 84585506 84585599 -142938979 - MIR SINE MIR -1 261 177 599 268 156 5 chr3 84586198 84586422 -142938156 - L2 LINE L2 -747 2567 2310 1403 266 153 81 chr3 84586429 84587031 -142937547 - MLT1E2 LTR MaLR -8 618 2 353 312 72 7 chr3 84587512 84587650 -142936928 + MIR SINE MIR 102 248 -14 277 264 19 85 chr3 84589858 84589964 -142934614 + MIR SINE MIR 108 206 -56 1128 276 82 41 chr3 84590207 84590697 -142933881 + MLT1J LTR MaLR 2 511 0 695 316 41 8 chr3 84590794 84591038 -142933540 + Charlie8 DNA MER1_type 14 265 -2152 519 297 248 18 chr3 84591082 84591409 -142933169 + LTR16C LTR ERVL 50 451 -40 449 209 0 70 chr3 84591584 84591713 -142932865 + Charlie8 DNA MER1_type 372 491 -1926 311 308 56 49 chr3 84592133 84592276 -142932302 + L2 LINE L2 3121 3264 -8 667 247 242 0 chr3 84592503 84592693 -142931885 + MIR SINE MIR 19 254 -8 2271 105 10 13 chr3 84592694 84592998 -142931580 - AluSx SINE Alu -9 303 1 357 219 131 58 chr3 84593061 84593198 -142931380 + L1ME4a LINE L1 5963 6109 -12 2641 107 6 3 chr3 84593377 84593740 -142930838 + THE1B LTR MaLR 1 364 0 197 296 42 0 chr3 84594008 84594079 -142930499 - L2 LINE L2 0 3313 3240 607 295 82 9 chr3 84594134 84594453 -142930125 + LTR33 LTR ERVL 13 354 -167 375 212 121 0 chr3 84594584 84594683 -142929895 - MIR SINE MIR -105 157 47 350 294 9 0 chr3 84595340 84595449 -142929129 + MER94 DNA DNA 24 133 -1 1509 218 59 40 chr3 84595560 84595709 -142928869 - Charlie4a DNA MER1_type -1459 502 357 2493 39 13 19 chr3 84595709 84596019 -142928559 + AluY SINE Alu 1 308 -3 1509 218 59 40 chr3 84596019 84596324 -142928254 - Charlie4a DNA MER1_type -1604 357 39 747 176 0 0 chr3 84596410 84596529 -142928049 - FLAM_C SINE Alu -23 120 2 332 270 71 0 chr3 84597621 84597747 -142926831 + LTR16C LTR ERVL 356 490 -1 427 255 48 35 chr3 84598367 84598512 -142926066 - L2 LINE L2 -2 3311 3165 340 235 20 10 chr3 84598549 84598634 -142925944 - MIR SINE MIR -56 206 118 1943 115 7 31 chr3 84598634 84598920 -142925658 + AluSx SINE Alu 1 279 -33 340 235 20 10 chr3 84598920 84598932 -142925646 - MIR SINE MIR -144 118 108 535 157 35 0 chr3 84598962 84599077 -142925501 + GA-rich Low_complexity Low_complexity 1 119 0 440 274 16 32 chr3 84599079 84599203 -142925375 - MIR SINE MIR -132 130 9 288 152 0 0 chr3 84599236 84599282 -142925296 - MER45 DNA AcHobo 0 1581 1536 1279 247 83 79 chr3 84599287 84599817 -142924761 - MER45C DNA AcHobo -321 632 101 2062 133 3 3 chr3 84599824 84600124 -142924454 + AluSx SINE Alu 1 300 -12 508 175 8 87 chr3 84600165 84600183 -142924395 - MER45C DNA AcHobo -835 118 100 1611 165 48 4 chr3 84600183 84600483 -142924095 + AluJb SINE Alu 1 312 0 508 175 8 87 chr3 84600483 84600589 -142923989 - MER45C DNA AcHobo -853 100 3 348 297 53 61 chr3 84600690 84600905 -142923673 - MIR SINE MIR -27 235 14 2349 229 43 35 chr3 84601296 84601834 -142922744 + MLT1F LTR MaLR 1 542 0 2138 135 0 0 chr3 84601995 84602292 -142922286 - AluSx SINE Alu -15 297 1 540 212 47 47 chr3 84602574 84602767 -142921811 - MLT1K LTR MaLR 0 588 396 231 256 0 132 chr3 84602935 84603064 -142921514 - MLT1K LTR MaLR -374 214 103 251 290 29 0 chr3 84603123 84603192 -142921386 - MIR SINE MIR -105 157 87 699 295 98 52 chr3 84603505 84603752 -142920826 + L2 LINE L2 2737 2971 -301 1890 157 0 39 chr3 84603752 84604064 -142920514 + AluSx SINE Alu 1 300 -12 699 295 98 52 chr3 84604064 84604333 -142920245 + L2 LINE L2 2971 3271 -1 223 171 24 0 chr3 84604333 84604374 -142920204 + GA-rich Low_complexity Low_complexity 6 47 0 278 256 15 53 chr3 84604582 84604715 -142919863 + GA-rich Low_complexity Low_complexity 1 128 0 551 255 0 27 chr3 84605638 84605787 -142918791 - MLT1K LTR MaLR -57 531 387 360 219 29 19 chr3 84605819 84605924 -142918654 - MLT1K LTR MaLR -278 310 205 186 310 71 32 chr3 84606270 84606425 -142918153 + L2 LINE L2 1805 1965 -1349 563 308 102 58 chr3 84606476 84607318 -142917260 + L2 LINE L2 2174 3080 -192 189 0 0 0 chr3 84607360 84607381 -142917197 + (TTTTC)n Simple_repeat Simple_repeat 3 23 0 2071 127 0 0 chr3 84607396 84607679 -142916899 - AluSx SINE Alu -29 283 1 352 314 24 24 chr3 84607782 84607906 -142916672 - L2 LINE L2 -12 3260 3137 1118 232 170 37 chr3 84607957 84608470 -142916108 + MLT1G1 LTR MaLR 1 578 -12 383 302 11 85 chr3 84608503 84608692 -142915886 + MIR3 SINE MIR 21 195 -13 231 235 20 0 chr3 84609365 84609416 -142915162 - L2 LINE L2 0 3272 3221 809 265 62 28 chr3 84609427 84609761 -142914817 - LTR16A1 LTR ERVL -12 476 119 415 188 152 0 chr3 84609845 84609957 -142914621 - MLT1L LTR MaLR -172 443 315 2232 117 0 0 chr3 84610069 84610360 -142914218 - AluSx SINE Alu -21 291 1 180 0 0 0 chr3 84610497 84610517 -142914061 + (A)n Simple_repeat Simple_repeat 1 20 0 711 270 117 36 chr3 84610603 84610995 -142913583 + MLT1K LTR MaLR 165 588 0 284 321 33 85 chr3 84610995 84611207 -142913371 - L2 LINE L2 -71 3201 3001 279 211 178 92 chr3 84611709 84611861 -142912717 + MIR SINE MIR 24 188 -74 307 132 0 38 chr3 84612486 84612539 -142912039 - Tigger3(Golem) DNA MER2_type -701 2328 2278 287 211 0 0 chr3 84612530 84612587 -142911991 - Tigger3(Golem) DNA MER2_type -2921 108 52 * 1688 95 99 12 chr3 84612587 84612839 -142911739 + AluSx SINE Alu 24 297 -15 2034 148 3 7 chr3 84612961 84613258 -142911320 + AluJo SINE Alu 1 296 -16 211 256 70 23 chr3 84613485 84613571 -142911007 - MIR SINE MIR -67 141 52 2459 94 0 3 chr3 84613647 84613955 -142910623 + AluSc SINE Alu 1 307 -2 1669 187 3 22 chr3 84614115 84614431 -142910147 + AluJb SINE Alu 3 312 0 826 284 140 25 chr3 84614468 84614905 -142909673 + L2 LINE L2 2827 3313 0 675 253 36 84 chr3 84615057 84615160 -142909418 - MIR SINE MIR -13 249 143 652 214 16 0 chr3 84615160 84615286 -142909292 + FLAM_A SINE Alu 1 128 -5 675 253 36 84 chr3 84615286 84615431 -142909147 - MIR SINE MIR -119 143 13 2174 117 3 7 chr3 84615525 84615823 -142908755 - AluSx SINE Alu -15 297 1 834 256 67 5 chr3 84617182 84617405 -142907173 + LTR16C LTR ERVL 254 490 -1 216 360 54 9 chr3 84617481 84617592 -142906986 - MER91A DNA MER1_type -51 145 30 450 299 21 14 chr3 84617746 84617890 -142906688 + MIR SINE MIR 3 147 -115 27 29 0 0 chr3 84618948 84618982 -142905596 + AT_rich Low_complexity Low_complexity 1 34 0 2486 62 7 3 chr3 84618982 84619290 -142905288 - AluY SINE Alu -2 309 1 1934 156 14 0 chr3 84619295 84619584 -142904994 - AluJo SINE Alu -17 295 3 198 103 0 0 chr3 84619955 84619984 -142904594 + (TC)n Simple_repeat Simple_repeat 2 30 0 761 278 44 24 chr3 84620081 84620286 -142904292 - MLT1K LTR MaLR -266 322 114 761 185 0 7 chr3 84620402 84620537 -142904041 - MER58 DNA MER1_type 0 2420 2287 391 211 0 130 chr3 84620531 84620576 -142904002 - MER58 DNA MER1_type -289 97 86 * 2284 117 0 7 chr3 84620576 84620884 -142903694 + AluSx SINE Alu 1 306 -6 391 211 0 130 chr3 84620884 84620961 -142903617 - MER58 DNA MER1_type -300 86 1 302 282 54 47 chr3 84621440 84621519 -142903059 + MLT1K LTR MaLR 439 521 -67 432 111 0 0 chr3 84621519 84621600 -142902978 + (CCTG)n Simple_repeat Simple_repeat 2 82 0 302 282 54 47 chr3 84621600 84621669 -142902909 + MLT1K LTR MaLR 521 588 0 527 255 216 30 chr3 84621749 84622078 -142902500 + MLT1H LTR MaLR 110 499 -50 312 296 17 26 chr3 84622527 84622642 -142901936 - L2 LINE L2 -8 3305 3192 358 344 18 6 chr3 84622724 84622887 -142901691 - MIR SINE MIR -35 227 63 304 167 59 0 chr3 84623028 84623100 -142901478 + MIR SINE MIR 116 189 -73 1425 140 44 0 chr3 84623118 84623346 -142901232 + AluJb SINE Alu 59 296 -16 2155 113 3 0 chr3 84623423 84623728 -142900850 - AluSx SINE Alu 0 306 1 282 81 0 0 chr3 84623936 84623973 -142900605 - tRNA-Glu-GAG tRNA tRNA -38 37 1 762 248 191 27 chr3 84624363 84624734 -142899844 - MLT1H LTR MaLR -8 541 110 1074 264 59 88 chr3 84624814 84624883 -142899695 - MLT1K LTR MaLR 0 588 519 471 112 0 0 chr3 84624883 84624972 -142899606 + (CAGG)n Simple_repeat Simple_repeat 2 90 0 1074 264 59 88 chr3 84624972 84625391 -142899187 - MLT1K LTR MaLR -69 519 114 746 193 0 7 chr3 84625507 84625642 -142898936 - MER58 DNA MER1_type 0 2420 2287 391 245 10 20 chr3 84625667 84625681 -142898897 - MER58 DNA MER1_type -289 97 84 2252 118 0 7 chr3 84625681 84625986 -142898592 + AluSx SINE Alu 1 303 -9 391 245 10 20 chr3 84625986 84626069 -142898509 - MER58 DNA MER1_type -302 84 1 2007 131 3 30 chr3 84626160 84626465 -142898113 + AluSx SINE Alu 1 297 -15 21 0 0 0 chr3 84626465 84626486 -142898092 + AT_rich Low_complexity Low_complexity 1 21 0 1902 173 20 12 chr3 84626670 84627011 -142897567 + MER2 DNA MER2_type 1 344 0 228 125 0 78 chr3 84628022 84628086 -142896492 + (CCCCG)n Simple_repeat Simple_repeat 5 63 0 237 278 60 30 chr3 84628634 84628767 -142895811 + MIR SINE MIR 15 151 -111 321 303 17 51 chr3 84629043 84629221 -142895357 - LTR16B LTR ERVL -268 196 25 757 328 58 22 chr3 84629314 84629759 -142894819 + MLT1K LTR MaLR 122 582 -6 368 290 9 9 chr3 84630213 84630320 -142894258 - MER5B DNA MER1_type -71 107 1 2249 117 3 0 chr3 84630475 84630774 -142893804 + AluSx SINE Alu 1 300 -12 203 143 24 24 chr3 84630821 84630863 -142893715 + L2 LINE L2 3213 3254 -18 1462 194 95 3 chr3 84630908 84631223 -142893355 - MER2 DNA MER2_type 0 344 1 802 123 171 34 chr3 84631249 84631395 -142893183 + FRAM SINE Alu 2 167 -9 304 266 76 33 chr3 84631556 84631740 -142892838 + L1ME4a LINE L1 5790 5981 -140 2230 94 0 57 chr3 84631776 84632107 -142892471 - AluSx SINE Alu 0 312 1 190 356 58 26 chr3 84633030 84633221 -142891357 - L2 LINE L2 -181 3091 2895 26 0 0 0 chr3 84634319 84634345 -142890233 + AT_rich Low_complexity Low_complexity 1 26 0 329 50 0 0 chr3 84634968 84635008 -142889570 + 5S rRNA rRNA 1 40 -81 2285 93 7 7 chr3 84635013 84635314 -142889264 - AluSx SINE Alu -11 301 1 243 248 238 9 chr3 84636359 84636464 -142888114 - L2 LINE L2 -1 3271 3143 943 268 89 23 chr3 84636487 84636834 -142887744 + L1MEc LINE L1 35 404 -5992 2230 112 7 3 chr3 84636877 84637173 -142887405 + AluSx SINE Alu 1 297 -15 1231 223 75 12 chr3 84637184 84637516 -142887062 + L1MEc LINE L1 490 842 -5554 1956 160 0 10 chr3 84637581 84637893 -142886685 + AluSx SINE Alu 2 310 -2 918 203 70 0 chr3 84637941 84638128 -142886450 + AluJb SINE Alu 85 284 -28 345 47 0 0 chr3 84638128 84638171 -142886407 + (CA)n Simple_repeat Simple_repeat 2 44 0 289 281 52 0 chr3 84638195 84638291 -142886287 + L1ME2 LINE L1 5429 5529 -637 1102 119 6 19 chr3 84639400 84639560 -142885018 + AluSg SINE Alu 1 158 -152 1615 103 9 0 chr3 84639660 84639874 -142884704 + AluSg/x SINE Alu 94 309 -3 402 160 21 53 chr3 84639877 84639971 -142884607 + MLT1C LTR MaLR 377 467 0 2961 82 20 2 chr3 84640454 84640857 -142883721 - L1PA13 LINE L1 -8 6155 5746 804 229 29 0 chr3 84640881 84641051 -142883527 + FAM SINE Alu 1 175 0 2333 116 3 0 chr3 84641463 84641774 -142882804 - AluSp SINE Alu -1 312 1 602 89 11 0 chr3 84642336 84642426 -142882152 + (TGGA)n Simple_repeat Simple_repeat 3 93 0 745 178 75 47 chr3 84642831 84643044 -142881534 + L1ME2 LINE L1 5734 5952 -212 456 250 61 34 chr3 84643050 84643198 -142881380 + L1MA10 LINE L1 6175 6326 -8 2099 136 36 0 chr3 84643358 84643688 -142880890 + MER2 DNA MER2_type 2 343 -1 386 337 39 21 chr3 84644346 84644628 -142879950 + L1M4 LINE L1 4873 5159 -987 2127 114 3 29 chr3 84644634 84644941 -142879637 + AluSx SINE Alu 1 299 -13 297 0 0 0 chr3 84644982 84645015 -142879563 + (TG)n Simple_repeat Simple_repeat 2 34 0 246 62 0 0 chr3 84645014 84645046 -142879532 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 470 205 33 16 chr3 84645095 84645217 -142879361 + L1M LINE L1 5304 5427 -2381 342 301 79 53 chr3 84645318 84645584 -142878994 - L2 LINE L2 -61 3211 2939 491 296 78 67 chr3 84645650 84646161 -142878417 - L2 LINE L2 -493 2821 2305 473 222 93 0 chr3 84646602 84646710 -142877868 - FLAM_A SINE Alu -10 132 15 1126 140 77 0 chr3 84647935 84648156 -142876422 - L1MC3 LINE L1 0 7785 7548 613 164 44 2 chr3 84648464 84648714 -142875864 + AluJo SINE Alu 1 301 -11 375 239 77 8 chr3 84650131 84650248 -142874330 + Charlie7 DNA MER1_type 31 155 -2457 2192 113 23 3 chr3 84650722 84651024 -142873554 + AluSx SINE Alu 1 308 -4 690 109 11 0 chr3 84651084 84651176 -142873402 + AluSq SINE Alu 110 202 -111 860 113 0 45 chr3 84651992 84652125 -142872453 - FLAM_C SINE Alu -16 127 1 485 299 37 100 chr3 84652431 84653029 -142871549 - L2 LINE L2 -1 3271 2717 299 25 25 0 chr3 84653590 84653630 -142870948 + (TTTTC)n Simple_repeat Simple_repeat 4 44 0 1498 149 62 40 chr3 84653633 84653909 -142870669 - AluJo SINE Alu -30 282 1 1529 257 130 34 chr3 84654073 84655491 -142869087 - L1ME3A LINE L1 -219 5951 4403 2203 139 36 0 chr3 84655524 84655855 -142868723 - MER7A DNA MER2_type 0 346 6 2643 274 118 35 chr3 84655859 84656940 -142867638 - L1ME3A LINE L1 -1806 4340 3350 2232 121 0 0 chr3 84656940 84657245 -142867333 - AluSx SINE Alu -7 305 1 2643 274 118 35 chr3 84657245 84658060 -142866518 - L1ME3A LINE L1 -2796 3350 2287 192 77 0 0 chr3 84658568 84658594 -142865984 + (T)n Simple_repeat Simple_repeat 1 26 0 242 257 0 29 chr3 84658779 84658849 -142865729 + CT-rich Low_complexity Low_complexity 1 68 0 228 226 0 0 chr3 84659089 84659142 -142865436 + CT-rich Low_complexity Low_complexity 1 53 0 397 358 122 6 chr3 84660065 84660425 -142864153 - L3 LINE CR1 -73 1504 1103 294 266 73 8 chr3 84660662 84660786 -142863792 - L3 LINE CR1 -752 825 694 180 209 75 30 chr3 84660838 84660905 -142863673 - L2 LINE L2 -43 3229 3160 550 341 110 0 chr3 84660912 84661158 -142863420 - L3 LINE CR1 -897 680 408 583 234 211 0 chr3 84661719 84661928 -142862650 + MIR SINE MIR 5 257 -5 524 219 0 65 chr3 84661999 84662224 -142862354 - MIR SINE MIR 0 262 6 1107 251 79 7 chr3 84662686 84662989 -142861589 + MER102a DNA MER1_type 2 326 -4 324 391 0 0 chr3 84663037 84663152 -142861426 + L2 LINE L2 3141 3255 -17 706 206 109 6 chr3 84665051 84665216 -142859362 - MER3 DNA MER1_type 0 209 28 500 204 25 119 chr3 84665958 84666193 -142858385 + L2 LINE L2 3024 3236 -77 2185 112 10 0 chr3 84666229 84666523 -142858055 + AluSx SINE Alu 1 297 -15 252 0 0 0 chr3 84666523 84666551 -142858027 + (TA)n Simple_repeat Simple_repeat 2 29 0 642 125 21 0 chr3 84666557 84666653 -142857925 + AluSg/x SINE Alu 201 298 -14 486 204 191 0 chr3 84667298 84667450 -142857128 - MER5A DNA MER1_type -5 184 4 578 183 17 9 chr3 84667737 84667852 -142856726 + FRAM SINE Alu 2 117 -59 185 308 15 0 chr3 84667942 84668007 -142856571 - MIR3 SINE MIR -6 202 137 1907 210 45 9 chr3 84668153 84668601 -142855977 - MLT1C LTR MaLR 0 467 4 225 0 0 0 chr3 84668994 84669019 -142855559 + (TC)n Simple_repeat Simple_repeat 2 26 0 * 369 0 0 0 chr3 84669018 84669059 -142855519 + (TG)n Simple_repeat Simple_repeat 2 42 0 2124 109 32 0 chr3 84669116 84669400 -142855178 + AluSx SINE Alu 1 293 -19 374 342 0 0 chr3 84669924 84670038 -142854540 + (TG)n Simple_repeat Simple_repeat 1 114 0 410 233 45 23 chr3 84670335 84670468 -142854110 + MIR SINE MIR 115 250 -12 1787 191 0 0 chr3 84670610 84670909 -142853669 + AluJo SINE Alu 1 299 -13 26 30 0 0 chr3 84670909 84670942 -142853636 + AT_rich Low_complexity Low_complexity 1 33 0 190 319 0 0 chr3 84671562 84671609 -142852969 + MIR3 SINE MIR 131 177 -31 9917 74 14 31 chr3 84673222 84674620 -142849958 + SVA Other Other 13 1386 0 208 283 19 0 chr3 84674708 84674761 -142849817 - MIR SINE MIR -95 113 60 1110 115 46 0 chr3 84674803 84674977 -142849601 - MER30B DNA MER1_type -4 186 5 955 111 0 15 chr3 84677238 84677373 -142847205 - FLAM_C SINE Alu 0 133 1 2273 108 7 0 chr3 84678025 84678331 -142846247 + AluSq SINE Alu 1 308 -5 2464 76 0 0 chr3 84678747 84679050 -142845528 + AluY SINE Alu 1 303 -8 410 276 32 16 chr3 84679826 84679949 -142844629 + L2 LINE L2 3189 3313 0 183 129 0 0 chr3 84681290 84681321 -142843257 + (TTTC)n Simple_repeat Simple_repeat 2 32 0 2353 98 3 0 chr3 84681526 84681832 -142842746 + AluSg SINE Alu 1 307 -3 2205 112 3 13 chr3 84682242 84682554 -142842024 + AluSx SINE Alu 1 309 -3 21 0 0 0 chr3 84682565 84682586 -142841992 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr3 84682632 84682653 -142841925 + (A)n Simple_repeat Simple_repeat 1 21 0 2233 121 0 9 chr3 84682679 84682994 -142841584 + AluSx SINE Alu 1 312 0 230 300 57 0 chr3 84683042 84683112 -142841466 - L2 LINE L2 -3 3310 3237 24 19 6 0 chr3 84683250 84683314 -142841264 + AT_rich Low_complexity Low_complexity 1 31 0 326 137 0 0 chr3 84684665 84684716 -142839862 + U2 snRNA snRNA 1 51 -137 641 197 39 16 chr3 84684742 84684869 -142839709 + FLAM_C SINE Alu 1 130 -3 862 153 65 18 chr3 84685690 84686025 -142838553 + MSTD LTR MaLR 1 389 -7 434 260 158 0 chr3 84686087 84686233 -142838345 - MIR SINE MIR -89 173 5 201 250 0 71 chr3 84686312 84686368 -142838210 + MIR SINE MIR 209 260 -2 1299 166 127 0 chr3 84689317 84689601 -142834977 - MER58B DNA MER1_type 0 341 22 1790 177 3 26 chr3 84689617 84689928 -142834650 - AluJo SINE Alu -8 304 1 960 72 39 78 chr3 84690014 84690194 -142834384 - L1PA11 LINE L1 -64 6110 5938 478 200 11 0 chr3 84690484 84690574 -142834004 - MER7A DNA MER2_type -257 89 1 219 271 17 0 chr3 84692045 84692104 -142832474 + L2 LINE L2 3002 3061 -211 305 264 28 14 chr3 84692624 84692696 -142831882 + L2 LINE L2 3196 3268 -4 696 191 36 36 chr3 84693504 84693698 -142830880 - L1MC5 LINE L1 -47 7914 7721 722 248 50 41 chr3 84693699 84693941 -142830637 + MIR SINE MIR 19 262 0 2115 134 3 3 chr3 84694968 84695273 -142829305 + AluSx SINE Alu 1 305 -7 583 267 136 0 chr3 84697204 84697410 -142827168 - MARNA DNA Mariner -19 567 334 301 375 34 64 chr3 84697450 84697685 -142826893 + L2 LINE L2 3039 3266 -6 2019 120 20 0 chr3 84698483 84698775 -142825803 + AluSx SINE Alu 3 300 -12 2387 64 13 0 chr3 84698775 84699073 -142825505 + AluY SINE Alu 1 302 -9 186 43 0 0 chr3 84699116 84699139 -142825439 + (T)n Simple_repeat Simple_repeat 1 23 0 335 243 10 58 chr3 84699694 84699797 -142824781 - MER5A DNA MER1_type -83 106 9 183 329 110 0 chr3 84700115 84700197 -142824381 + MIR SINE MIR 79 169 -93 22 56 0 0 chr3 84700235 84700271 -142824307 + AT_rich Low_complexity Low_complexity 1 36 0 327 286 78 16 chr3 84701490 84701682 -142822896 + L1ME4a LINE L1 5862 6065 -56 217 145 32 48 chr3 84703095 84703157 -142821421 + (TTAAA)n Simple_repeat Simple_repeat 4 64 0 384 308 64 23 chr3 84703454 84703728 -142820850 - L1MC4a LINE L1 -314 5807 5617 1364 232 82 82 chr3 84703936 84704449 -142820129 + MLT1E LTR MaLR 81 593 0 309 332 64 27 chr3 84704449 84704636 -142819942 - L1MC4a LINE L1 -2547 5448 5255 900 150 16 72 chr3 84704825 84705018 -142819560 - Tigger2a DNA MER2_type -252 182 1 196 259 56 0 chr3 84707332 84707386 -142817192 - MIR SINE MIR -51 211 155 2418 70 0 0 chr3 84708159 84708459 -142816119 + AluY SINE Alu 1 300 -11 268 294 15 0 chr3 84708599 84708667 -142815911 - L2 LINE L2 -13 3300 3232 268 316 31 31 chr3 84708765 84708961 -142815617 + L1MC4a LINE L1 5709 5904 -1904 21 36 0 0 chr3 84709149 84709177 -142815401 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 84709447 84709472 -142815106 + AT_rich Low_complexity Low_complexity 1 25 0 1644 194 3 35 chr3 84710079 84710394 -142814184 - AluJo SINE Alu -7 305 1 342 0 0 0 chr3 84710653 84710691 -142813887 + (CA)n Simple_repeat Simple_repeat 2 39 0 801 267 12 17 chr3 84711178 84711418 -142813160 - MIR SINE MIR -9 253 15 438 301 15 0 chr3 84711743 84711876 -142812702 - L2 LINE L2 -2 3270 3136 192 244 0 0 chr3 84712174 84712215 -142812363 + L2 LINE L2 3230 3270 -2 2476 60 3 22 chr3 84712234 84712548 -142812030 + AluY SINE Alu 1 308 -3 214 279 249 35 chr3 84712832 84713061 -142811517 + L2 LINE L2 2065 2342 -972 661 170 30 37 chr3 84713162 84713297 -142811281 + FRAM SINE Alu 18 151 -25 2217 114 0 0 chr3 84713773 84714070 -142810508 + AluSx SINE Alu 1 297 -15 706 144 0 0 chr3 84714196 84714307 -142810271 - FLAM_C SINE Alu -32 111 1 966 103 0 55 chr3 84714370 84714515 -142810063 + AluY SINE Alu 1 137 -174 371 141 17 2 chr3 84714617 84714686 -142809892 - AluJ/FLAM SINE Alu -240 62 3 1967 159 11 28 chr3 84714693 84715046 -142809532 - MER7A DNA MER2_type -1 345 1 2264 68 4 0 chr3 84715250 84715530 -142809048 - AluY SINE Alu -30 281 1 562 257 65 118 chr3 84715745 84715783 -142808795 - LTR16A1 LTR ERVL -1 456 418 2138 117 0 10 chr3 84715783 84715946 -142808632 - AluSx SINE Alu -16 296 136 2410 81 0 0 chr3 84715946 84716274 -142808304 - AluSq SINE Alu 0 313 1 2138 117 0 10 chr3 84716274 84716409 -142808169 - AluSx SINE Alu -176 136 1 562 257 65 118 chr3 84716409 84716730 -142807848 - LTR16A1 LTR ERVL -39 418 125 773 228 78 15 chr3 84716730 84716936 -142807642 + MER20 DNA MER1_type 1 219 0 562 257 65 118 chr3 84716936 84717050 -142807528 - LTR16A1 LTR ERVL -332 125 7 1298 119 42 4 chr3 84717617 84717891 -142806687 + L1P5 LINE L1 5213 5495 -661 1195 137 0 16 chr3 84717993 84718183 -142806395 + AluSg/x SINE Alu 112 298 -14 390 268 18 0 chr3 84718346 84718458 -142806120 - MIR SINE MIR -1 261 148 550 294 141 37 chr3 84718466 84718792 -142805786 - MLT1K LTR MaLR -9 579 220 254 284 26 86 chr3 84718822 84718938 -142805640 - MLT1K LTR MaLR -433 155 47 485 267 27 20 chr3 84719001 84719147 -142805431 - MIR SINE MIR -114 148 2 316 259 36 43 chr3 84719244 84719383 -142805195 + L1ME4a LINE L1 5873 6010 -111 297 241 146 80 chr3 84719930 84720040 -142804538 + MER91A DNA MER1_type 18 141 -55 2209 92 4 0 chr3 84720040 84720346 -142804232 - AluSp SINE Alu 0 307 1 297 241 146 80 chr3 84720346 84720371 -142804207 + MER91A DNA MER1_type 141 163 -33 332 300 0 0 chr3 84720386 84720466 -142804112 + MIR SINE MIR 3 82 -180 807 170 109 7 chr3 84721572 84721687 -142802891 + AluJo SINE Alu 1 136 -176 230 0 0 32 chr3 84721687 84721718 -142802860 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 807 170 109 7 chr3 84721718 84721749 -142802829 + AluJo SINE Alu 136 162 -150 2229 113 3 0 chr3 84721752 84722052 -142802526 + AluSg SINE Alu 3 303 -7 385 232 63 0 chr3 84722080 84722175 -142802403 + MER113 DNA MER1_type? 349 449 -72 251 203 0 34 chr3 84722399 84722458 -142802120 + L1MB7 LINE L1 5603 5659 -462 414 278 56 0 chr3 84722535 84722661 -142801917 + MER5A DNA MER1_type 57 189 0 465 308 81 28 chr3 84722845 84723092 -142801486 - MLT1K LTR MaLR -4 584 325 26 0 0 0 chr3 84723649 84723675 -142800903 + AT_rich Low_complexity Low_complexity 1 26 0 1546 146 27 112 chr3 84723776 84724106 -142800472 + AluSx SINE Alu 1 302 -10 562 130 0 33 chr3 84724206 84724317 -142800261 + FRAM SINE Alu 69 176 0 2180 126 3 7 chr3 84724516 84724826 -142799752 - AluSx SINE Alu -3 309 1 2122 244 37 13 chr3 84724880 84725425 -142799153 + L1ME3A LINE L1 5461 6018 -152 792 116 8 39 chr3 84725548 84725677 -142798901 + AluSq/x SINE Alu 12 136 -176 1499 96 0 0 chr3 84725724 84725922 -142798656 + AluY SINE Alu 114 311 0 680 224 77 0 chr3 84726222 84726378 -142798200 - MER115 DNA AcHobo -2 691 524 538 270 156 57 chr3 84726480 84726691 -142797887 - MER115 DNA AcHobo -320 373 142 2713 60 63 26 chr3 84726768 84727119 -142797459 + THE1B LTR MaLR 1 364 0 186 222 22 0 chr3 84727299 84727344 -142797234 + L3 LINE CR1 1525 1570 -7 2166 131 0 7 chr3 84727633 84727938 -142796640 + AluSx SINE Alu 1 303 -9 1361 221 92 15 chr3 84728318 84728729 -142795849 + L1MB7 LINE L1 5742 6184 0 2247 119 3 3 chr3 84729038 84729348 -142795230 + AluSx SINE Alu 1 310 -2 352 183 96 87 chr3 84729349 84729453 -142795125 + MIR3 SINE MIR 68 172 -36 1021 217 64 124 chr3 84729762 84730396 -142794182 - MLT1G LTR MaLR 0 590 1 2100 133 0 0 chr3 84730555 84730863 -142793715 + AluSx SINE Alu 1 308 0 434 302 89 27 chr3 84730872 84730977 -142793601 + MIR SINE MIR 24 121 -141 180 0 0 0 chr3 84730977 84730997 -142793581 + (TGG)n Simple_repeat Simple_repeat 1 20 0 434 302 89 27 chr3 84730997 84731116 -142793462 + MIR SINE MIR 121 262 0 2117 126 7 7 chr3 84731444 84731745 -142792833 + AluSx SINE Alu 1 301 -11 284 343 143 32 chr3 84731747 84732272 -142792306 - L2 LINE L2 -394 2920 2338 327 310 35 42 chr3 84732400 84732542 -142792036 + L2 LINE L2 3173 3313 0 184 347 0 0 chr3 84733082 84733131 -142791447 - L2 LINE L2 -11 3261 3213 27 49 0 0 chr3 84733550 84733591 -142790987 + AT_rich Low_complexity Low_complexity 1 41 0 318 174 198 0 chr3 84734424 84734510 -142790068 + MIR SINE MIR 34 136 -126 236 238 75 12 chr3 84735659 84735739 -142788839 - MIR SINE MIR -6 256 172 1199 165 29 5 chr3 84735965 84736171 -142788407 - MER46A DNA MER2_type 0 236 26 1858 140 4 0 chr3 84736191 84736470 -142788108 + AluJb SINE Alu 1 280 -32 995 47 8 0 chr3 84736476 84736605 -142787973 + (TAGA)n Simple_repeat Simple_repeat 3 132 0 299 215 0 31 chr3 84737180 84737245 -142787333 - MER46A DNA MER2_type -126 110 48 339 199 132 44 chr3 84737274 84737333 -142787245 + MIR SINE MIR 109 161 -101 1185 203 254 34 chr3 84737333 84737746 -142786832 - MLT1D LTR MaLR -1 504 1 339 199 132 44 chr3 84737746 84737822 -142786756 + MIR SINE MIR 161 256 -6 507 269 113 51 chr3 84738265 84738521 -142786057 + L2 LINE L2 2997 3268 -45 347 263 0 93 chr3 84738531 84738649 -142785929 - L2 LINE L2 -2 3311 3205 2471 67 0 0 chr3 84738682 84738979 -142785599 + AluY SINE Alu 1 297 -14 261 202 202 0 chr3 84739892 84739986 -142784592 + L1ME4a LINE L1 6009 6121 0 1010 226 129 7 chr3 84740476 84740763 -142783815 - MER46C DNA MER2_type -16 322 1 2015 112 34 17 chr3 84740971 84741265 -142783313 - AluSg SINE Alu -11 299 1 381 326 18 22 chr3 84741989 84742178 -142782400 - MIR SINE MIR -41 221 35 604 316 36 48 chr3 84742293 84742708 -142781870 - L1ME LINE L1 -357 5813 5404 738 266 55 93 chr3 84743074 84743492 -142781086 + L2 LINE L2 2912 3313 0 507 363 7 39 chr3 84743685 84743969 -142780609 - L2 LINE L2 -516 2798 2524 382 213 148 9 chr3 84745466 84745574 -142779004 + MIR SINE MIR 66 188 -74 1573 169 55 15 chr3 84745574 84745846 -142778732 - AluJb SINE Alu -29 283 1 2121 132 0 3 chr3 84745879 84746190 -142778388 - AluSx SINE Alu -2 310 1 452 285 16 57 chr3 84746256 84746502 -142778076 - L1ME4a LINE L1 -157 5964 5729 305 165 37 119 chr3 84747001 84747110 -142777468 - MIR SINE MIR -70 192 93 456 313 0 0 chr3 84747180 84747295 -142777283 + MIR SINE MIR 32 146 -62 264 326 103 9 chr3 84747491 84747715 -142776863 - MLT1I LTR MaLR -158 251 7 2199 108 7 0 chr3 84747830 84748118 -142776460 + AluSx SINE Alu 1 290 -22 1529 219 153 32 chr3 84748181 84748585 -142775993 + MLT1F LTR MaLR 15 369 -173 1246 171 36 108 chr3 84748585 84748777 -142775801 - AluJo SINE Alu -2 310 106 300 53 0 0 chr3 84748777 84748815 -142775763 + (TG)n Simple_repeat Simple_repeat 2 39 0 189 0 0 0 chr3 84748814 84748835 -142775743 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 1246 171 36 108 chr3 84748815 84748835 -142775743 - AluJo SINE Alu -206 106 86 2016 146 3 0 chr3 84748835 84749129 -142775449 - AluSx SINE Alu -16 296 2 1246 171 36 108 chr3 84749129 84749269 -142775309 - AluJo SINE Alu -226 86 1 1529 219 153 32 chr3 84749269 84749335 -142775243 + MLT1F LTR MaLR 369 542 0 240 86 0 138 chr3 84749336 84749394 -142775184 - L1MC4 LINE L1 -1339 6703 6654 1166 173 100 16 chr3 84749483 84749732 -142774846 + MLT1G LTR MaLR 321 590 0 1729 39 5 0 chr3 84749846 84750050 -142774528 - AluY SINE Alu 0 311 107 493 125 50 0 chr3 84750150 84750230 -142774348 - AluSg1 SINE Alu -225 84 1 1539 97 48 0 chr3 84750234 84750440 -142774138 + AluSq SINE Alu 91 306 -7 1911 146 26 16 chr3 84750456 84750764 -142773814 + AluSx SINE Alu 1 311 -1 21 0 0 0 chr3 84751383 84751404 -142773174 + AT_rich Low_complexity Low_complexity 1 21 0 927 212 165 35 chr3 84751446 84751824 -142772754 + L1ME2 LINE L1 5655 6092 -72 2203 147 27 15 chr3 84751824 84752157 -142772421 - MER1B DNA MER1_type 0 337 1 927 212 165 35 chr3 84752157 84752193 -142772385 + L1ME2 LINE L1 6092 6122 -42 832 181 0 0 chr3 84752621 84752748 -142771830 + FLAM_C SINE Alu 1 127 -16 33 43 0 0 chr3 84752748 84752795 -142771783 + AT_rich Low_complexity Low_complexity 1 47 0 2287 80 0 13 chr3 84752968 84753268 -142771310 + AluSc SINE Alu 1 296 -13 2003 144 52 23 chr3 84754883 84755230 -142769348 + MER46B DNA MER2_type 1 232 -4 2084 133 3 7 chr3 84755376 84755684 -142768894 + AluSx SINE Alu 1 307 -5 297 329 54 54 chr3 84755686 84755926 -142768652 + L2 LINE L2 2630 2869 -445 615 275 70 37 chr3 84756072 84756316 -142768262 + MIR SINE MIR 11 262 0 2022 137 7 10 chr3 84756470 84756770 -142767808 - AluSx SINE Alu -11 301 3 363 242 53 11 chr3 84756807 84756902 -142767676 + MLT1H1 LTR MaLR 35 133 -422 494 276 181 0 chr3 84757088 84757309 -142767269 + L2 LINE L2 2995 3255 -58 276 281 21 42 chr3 84757583 84757679 -142766899 + MIR SINE MIR 132 225 -37 581 294 54 23 chr3 84758835 84759056 -142765522 + MIR SINE MIR 18 245 -17 205 304 14 0 chr3 84759138 84759207 -142765371 + CT-rich Low_complexity Low_complexity 2 71 0 449 281 226 5 chr3 84759817 84760016 -142764562 - MIR SINE MIR -8 254 12 2371 90 3 0 chr3 84760229 84760529 -142764049 + AluSq SINE Alu 1 301 -12 23 0 0 0 chr3 84760575 84760598 -142763980 + AT_rich Low_complexity Low_complexity 1 23 0 1134 145 11 21 chr3 84761948 84762134 -142762444 + AluSx SINE Alu 1 184 -128 2078 136 0 0 chr3 84762236 84762523 -142762055 - AluSx SINE Alu -25 287 1 3950 139 5 16 chr3 84762524 84763150 -142761428 - L1MC2 LINE L1 -369 5975 5357 1885 136 13 23 chr3 84763152 84763453 -142761125 - AluSx SINE Alu -14 298 1 371 301 77 22 chr3 84763494 84763677 -142760901 + L1ME4a LINE L1 5633 5825 -296 1470 213 66 12 chr3 84763686 84764005 -142760573 + MER58B DNA MER1_type 3 338 -3 1427 153 0 5 chr3 84764222 84764437 -142760141 - AluJb SINE Alu -14 298 85 663 160 9 0 chr3 84764792 84764898 -142759680 + AluJb SINE Alu 203 309 -3 1818 118 62 7 chr3 84765174 84765463 -142759115 + AluSg SINE Alu 1 305 -5 800 186 0 0 chr3 84765508 84765626 -142758952 + FLAM_C SINE Alu 1 118 -15 736 258 50 86 chr3 84765684 84765986 -142758592 - MLT1I LTR MaLR -73 336 46 311 306 169 20 chr3 84766086 84766150 -142758428 - L3 LINE CR1 -86 1491 1438 2219 79 20 10 chr3 84766150 84766442 -142758136 - AluSx SINE Alu -17 295 1 311 306 169 20 chr3 84766442 84766632 -142757946 - L3 LINE CR1 -139 1438 1199 1913 154 7 0 chr3 84766840 84767125 -142757453 - AluSx SINE Alu -25 287 1 2910 13 0 0 chr3 84767130 84767446 -142757132 - AluYb8 SINE Alu -2 316 1 1847 156 7 0 chr3 84767584 84767882 -142756696 - AluJb SINE Alu 0 305 6 1161 286 44 68 chr3 84767888 84768142 -142756436 - L1MEd LINE L1 -4883 1236 978 2359 84 3 0 chr3 84768142 84768438 -142756140 - AluSg SINE Alu -13 297 1 1161 286 44 68 chr3 84768438 84768792 -142755786 - L1MEd LINE L1 -5141 978 645 1573 209 94 47 chr3 84768792 84769238 -142755340 - MLT1C LTR MaLR 0 467 1 1161 286 44 68 chr3 84769238 84769348 -142755230 - L1MEd LINE L1 -5474 645 534 2017 154 0 3 chr3 84769378 84769683 -142754895 - AluJo SINE Alu -8 304 1 2337 95 0 0 chr3 84769842 84770137 -142754441 - AluSx SINE Alu -13 299 5 290 305 11 11 chr3 84770285 84770380 -142754198 - L1MEd LINE L1 -5937 182 88 480 302 138 38 chr3 84770387 84770893 -142753685 + L1ME LINE L1 4475 5031 -1115 * 1422 245 17 41 chr3 84770885 84771014 -142753564 + L1ME LINE L1 5232 5363 -799 2132 124 0 13 chr3 84771014 84771321 -142753257 + AluSx SINE Alu 1 303 -9 1422 245 17 41 chr3 84771321 84771643 -142752935 + L1ME LINE L1 5363 5675 -487 223 232 74 105 chr3 84771748 84771843 -142752735 + MER5A DNA MER1_type 10 101 -88 250 290 0 0 chr3 84771907 84771969 -142752609 + MLT1L LTR MaLR 554 615 0 411 21 0 0 chr3 84772059 84772107 -142752471 + (CA)n Simple_repeat Simple_repeat 2 49 0 1849 89 43 4 chr3 84772140 84772398 -142752180 + AluSc SINE Alu 40 307 -2 1636 181 3 28 chr3 84772433 84772753 -142751825 + AluJb SINE Alu 1 312 0 1469 172 35 21 chr3 84772924 84773209 -142751369 + L1MC2 LINE L1 6007 6295 -49 2146 128 0 0 chr3 84773250 84773562 -142751016 - AluSx SINE Alu 0 312 1 812 164 7 27 chr3 84773562 84773697 -142750881 - FLAM_C SINE Alu -178 134 1 26 30 0 0 chr3 84773738 84773771 -142750807 + AT_rich Low_complexity Low_complexity 1 33 0 387 237 71 65 chr3 84773777 84773946 -142750632 - L1ME4a LINE L1 -17 6104 5935 2218 86 3 23 chr3 84773946 84774248 -142750330 - AluSx SINE Alu -16 296 1 24 32 0 0 chr3 84774303 84774334 -142750244 + AT_rich Low_complexity Low_complexity 1 31 0 271 233 29 58 chr3 84774526 84774537 -142750041 - L1ME4a LINE L1 -296 5825 5815 231 36 0 0 chr3 84774546 84774574 -142750004 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 1819 144 20 7 chr3 84774574 84774856 -142749722 - AluSx SINE Alu -23 289 1 271 233 29 58 chr3 84774856 84774947 -142749631 - L1ME4a LINE L1 -306 5815 5726 214 162 27 0 chr3 84775773 84775810 -142748768 + L2 LINE L2 3219 3256 -16 1940 152 3 13 chr3 84775965 84776100 -142748478 + AluJb SINE Alu 1 136 -176 2224 116 0 0 chr3 84776100 84776393 -142748185 + AluSq SINE Alu 1 293 -20 1940 152 3 13 chr3 84776393 84776566 -142748012 + AluJb SINE Alu 136 306 -6 23 33 0 0 chr3 84776566 84776596 -142747982 + AT_rich Low_complexity Low_complexity 1 30 0 557 303 131 62 chr3 84776686 84776932 -142747646 - L2 LINE L2 0 3272 3044 892 159 0 0 chr3 84776932 84777058 -142747520 - FLAM_C SINE Alu -7 126 1 557 303 131 62 chr3 84777058 84777314 -142747264 - L2 LINE L2 -228 3044 2807 1702 161 3 41 chr3 84777314 84777631 -142746947 - AluJo SINE Alu -7 305 1 557 303 131 62 chr3 84777631 84777921 -142746657 - L2 LINE L2 -465 2807 2421 458 143 13 0 chr3 84777921 84777998 -142746580 + MER116 DNA Mariner 3 80 0 557 303 131 62 chr3 84777998 84778122 -142746456 - L2 LINE L2 -851 2421 2307 2415 103 3 0 chr3 84778272 84778583 -142745995 - AluSx SINE Alu 0 312 1 1981 135 0 3 chr3 84780084 84780366 -142744212 - AluJb SINE Alu -31 281 1 687 204 48 42 chr3 84780999 84781166 -142743412 - MLT1K LTR MaLR -2 586 419 1937 239 22 14 chr3 84781279 84781694 -142742884 + L1M4b LINE L1 -564 4294967149 -6431 1036 185 36 5 chr3 84781702 84781897 -142742681 + L1M4b LINE L1 250 450 -5834 488 253 2 30 chr3 84782841 84783012 -142741566 + L1M4b LINE L1 2259 2416 -3968 2177 123 3 0 chr3 84783012 84783313 -142741265 + AluSq SINE Alu 1 302 -11 488 253 2 30 chr3 84783313 84783371 -142741207 + L1M4b LINE L1 2416 2474 -3910 2292 58 41 7 chr3 84783373 84783665 -142740913 + AluYb8 SINE Alu 15 316 -2 2253 132 0 0 chr3 84783837 84784147 -142740431 - AluJb SINE Alu -2 310 1 2596 236 49 34 chr3 84784153 84784470 -142740108 + L1M4b LINE L1 2793 3104 -3278 2395 77 3 6 chr3 84784470 84784782 -142739796 - AluY SINE Alu 0 311 1 2596 236 49 34 chr3 84784782 84785299 -142739279 + L1M4b LINE L1 3104 3640 -2742 521 204 49 28 chr3 84785304 84785324 -142739254 - L1M4 LINE L1 -933 5213 5195 2044 101 56 17 chr3 84785324 84785611 -142738967 - AluSq SINE Alu -15 298 1 521 204 49 28 chr3 84785611 84785732 -142738846 - L1M4 LINE L1 -951 5195 5069 424 333 32 0 chr3 84785732 84785855 -142738723 - MLT1K LTR MaLR -365 223 97 916 259 19 12 chr3 84786111 84786370 -142738208 + MIR SINE MIR 1 261 -1 1602 170 28 11 chr3 84786880 84787162 -142737416 + AluJb SINE Alu 1 287 -25 1969 160 0 13 chr3 84787326 84787639 -142736939 - AluJo SINE Alu -3 309 1 3510 265 108 31 chr3 84787704 84789237 -142735341 + HAL1 LINE L1 196 1846 -661 2397 97 0 3 chr3 84789264 84789575 -142735003 + AluY SINE Alu 2 311 0 854 228 151 62 chr3 84789608 84789626 -142734952 + HAL1 LINE L1 2000 2015 -492 1964 133 43 13 chr3 84789626 84789927 -142734651 + AluSg SINE Alu 1 310 0 854 228 151 62 chr3 84789927 84790311 -142734267 + HAL1 LINE L1 2015 2438 -69 567 279 72 10 chr3 84790412 84790620 -142733958 - MER112 DNA MER1_type -32 228 8 277 329 110 7 chr3 84790728 84790874 -142733704 - MIR SINE MIR -55 207 47 215 304 61 43 chr3 84791108 84791223 -142733355 + L2 LINE L2 3107 3223 -90 813 139 21 49 chr3 84791231 84791375 -142733203 + FLAM_C SINE Alu 2 141 -2 314 204 11 0 chr3 84791453 84791541 -142733037 + (TGGA)n Simple_repeat Simple_repeat 3 91 0 1464 161 0 25 chr3 84791751 84791987 -142732591 - AluJb SINE Alu -82 230 1 1025 191 0 6 chr3 84791997 84792180 -142732398 + AluJb SINE Alu 123 304 -8 398 309 103 0 chr3 84792230 84792405 -142732173 - L2 LINE L2 -3 3310 3118 1729 179 10 0 chr3 84792678 84792979 -142731599 - AluJo SINE Alu -8 304 1 209 200 0 0 chr3 84793642 84793682 -142730896 + (CA)n Simple_repeat Simple_repeat 1 40 0 4306 206 61 62 chr3 84793813 84795060 -142729518 + L1MC4a LINE L1 6563 7808 0 2105 120 7 3 chr3 84795367 84795676 -142728902 - AluJb SINE Alu -2 310 1 526 163 10 0 chr3 84795687 84795785 -142728793 - L1MB4 LINE L1 0 6180 6082 966 133 0 0 chr3 84795855 84795983 -142728595 - FLAM_C SINE Alu -4 129 2 1099 158 0 0 chr3 84796088 84796253 -142728325 - AluJo/FRAM SINE Alu -12 300 136 2122 103 45 0 chr3 84796254 84796544 -142728034 - AluSx SINE Alu -9 303 1 1717 75 0 42 chr3 84797079 84797318 -142727260 + AluY SINE Alu 83 311 0 1449 180 4 16 chr3 84797454 84797709 -142726869 - AluJo SINE Alu -37 275 24 256 246 0 16 chr3 84797709 84797770 -142726808 - AluJ/FLAM SINE Alu -242 60 1 260 213 0 0 chr3 84797770 84797817 -142726761 - L1MCa LINE L1 -4249 2177 2131 2532 138 32 19 chr3 84799343 84799999 -142724579 - L1MCa LINE L1 -4285 2141 1341 2511 169 47 29 chr3 84799999 84800376 -142724202 + MSTB2 LTR MaLR 1 389 -68 1715 151 65 0 chr3 84800376 84800654 -142723924 + AluSx SINE Alu 1 296 -16 2511 169 47 29 chr3 84800654 84800725 -142723853 + MSTB2 LTR MaLR 389 457 0 2532 138 32 19 chr3 84800725 84800879 -142723699 - L1MCa LINE L1 -5085 1341 1191 1465 130 25 25 chr3 84800881 84801069 -142723509 + MSTB1 LTR MaLR 194 384 -48 2214 121 0 3 chr3 84801069 84801376 -142723202 + AluSx SINE Alu 1 306 -6 1465 130 25 25 chr3 84801376 84801426 -142723152 + MSTB1 LTR MaLR 383 432 0 309 109 0 0 chr3 84801427 84801473 -142723105 - L1MCa LINE L1 -5470 956 911 5755 74 30 18 chr3 84801473 84802142 -142722436 + L1PB1 LINE L1 5344 6026 -125 2450 76 0 0 chr3 84802142 84802445 -142722133 + AluY SINE Alu 1 303 -8 5755 74 30 18 chr3 84802445 84802573 -142722005 + L1PB1 LINE L1 6026 6151 0 4056 167 73 19 chr3 84802608 84803417 -142721161 - L1MCa LINE L1 -5499 927 75 462 259 136 0 chr3 84803462 84803609 -142720969 + MIR SINE MIR 92 258 -4 186 143 48 0 chr3 84803653 84803716 -142720862 + (TA)n Simple_repeat Simple_repeat 2 67 0 521 333 33 6 chr3 84803838 84804021 -142720557 - MIR SINE MIR -56 206 19 344 304 60 16 chr3 84804077 84804261 -142720317 + L1M4 LINE L1 4840 5031 -1115 904 182 94 6 chr3 84804273 84804454 -142720124 - MER3 DNA MER1_type 0 209 13 806 186 14 7 chr3 84804455 84804595 -142719983 - FLAM_C SINE Alu -1 142 2 248 293 43 0 chr3 84804612 84804728 -142719850 + L1M4 LINE L1 5042 5162 -984 1109 226 20 28 chr3 84804728 84804976 -142719602 + MLT1E LTR MaLR 348 593 0 193 264 38 0 chr3 84805222 84805275 -142719303 - L2 LINE L2 -988 2326 2272 567 152 11 0 chr3 84805304 84805396 -142719182 + THE1A LTR MaLR 196 288 -67 2194 92 30 0 chr3 84807758 84808053 -142716525 + AluSx SINE Alu 1 304 -8 658 314 10 10 chr3 84808388 84808595 -142715983 - MIR SINE MIR -10 252 46 182 296 19 0 chr3 84808807 84808861 -142715717 - L2 LINE L2 -5 3308 3254 207 100 0 0 chr3 84809042 84809072 -142715506 + (CGAA)n Simple_repeat Simple_repeat 3 32 0 375 294 187 53 chr3 84809158 84809651 -142714927 + L1M2 LINE L1 458 1016 -5833 1805 107 35 60 chr3 84811052 84811369 -142713209 - AluSx SINE Alu -3 309 1 1062 161 33 6 chr3 84811386 84811566 -142713012 + MER5A DNA MER1_type 1 185 -4 443 264 65 7 chr3 84811568 84811723 -142712855 - MIR SINE MIR -91 171 8 402 250 0 0 chr3 84813263 84813351 -142711227 + MIR3 SINE MIR 119 206 -2 204 246 273 9 chr3 84813743 84813853 -142710725 - L2 LINE L2 -6 3307 3169 1025 285 133 26 chr3 84814152 84814936 -142709642 + L2 LINE L2 2461 3313 0 236 130 43 22 chr3 84815136 84815182 -142709396 - Alu SINE Alu -9 293 247 236 268 73 12 chr3 84815239 84815321 -142709257 + MLT1K LTR MaLR 159 245 -343 2202 138 13 162 chr3 84815806 84816343 -142708235 + LTR32 LTR ERVL 15 471 0 227 196 0 20 chr3 84816514 84816565 -142708013 + (GGGTG)n Simple_repeat Simple_repeat 5 54 0 337 170 32 32 chr3 84816626 84816720 -142707858 + MLT1K LTR MaLR 492 585 -3 190 254 28 70 chr3 84817223 84817294 -142707284 - MIR3 SINE MIR -40 168 101 24 0 0 0 chr3 84867766 84867790 -142656788 + AT_rich Low_complexity Low_complexity 1 24 0 1920 113 69 0 chr3 84868798 84869073 -142655505 + AluSx SINE Alu 1 294 -18 1028 136 18 24 chr3 84869248 84869417 -142655161 + AluJb SINE Alu 135 302 -10 507 259 146 29 chr3 84870490 84870695 -142653883 - MIR SINE MIR -3 259 31 21 36 0 0 chr3 84870708 84870736 -142653842 + AT_rich Low_complexity Low_complexity 1 28 0 642 251 47 125 chr3 84870738 84870910 -142653668 - HAL1 LINE L1 0 2507 2323 2280 96 0 17 chr3 84870910 84871211 -142653367 - AluSc SINE Alu -13 296 1 642 251 47 125 chr3 84871211 84871461 -142653117 - HAL1 LINE L1 -184 2323 2118 2366 101 0 0 chr3 84871693 84872000 -142652578 + AluSx SINE Alu 1 307 -5 692 157 71 116 chr3 84872058 84872256 -142652322 + AluJo SINE Alu 86 274 -38 985 176 21 21 chr3 84872261 84872448 -142652130 + AluJb SINE Alu 110 296 -16 955 316 122 12 chr3 84872618 84873102 -142651476 - L2 LINE L2 -338 2976 2440 181 283 19 0 chr3 84873117 84873170 -142651408 - L2 LINE L2 -61 3211 3158 2179 98 9 44 chr3 84873959 84874277 -142650301 + AluSx SINE Alu 1 307 -5 364 263 134 45 chr3 84874504 84874683 -142649895 - MIR SINE MIR -1 261 67 838 142 52 0 chr3 84875272 84875406 -142649172 + AluSg SINE Alu 14 154 -156 739 208 0 0 chr3 84875509 84875639 -142648939 - FLAM_C SINE Alu -3 130 1 645 246 8 0 chr3 84875640 84875770 -142648808 + MER58B DNA MER1_type 211 341 0 198 0 0 0 chr3 84875912 84875934 -142648644 + (A)n Simple_repeat Simple_repeat 1 22 0 775 191 180 97 chr3 84875942 84876076 -142648502 + AluJo SINE Alu 1 122 -180 1980 159 0 0 chr3 84876076 84876365 -142648213 + AluSx SINE Alu 1 289 -23 775 191 180 97 chr3 84876365 84876508 -142648070 + AluJo SINE Alu 122 301 -1 2302 90 3 10 chr3 84876587 84876886 -142647692 + AluSp SINE Alu 1 297 -16 538 339 25 0 chr3 84877426 84877662 -142646916 + MIR SINE MIR 6 247 -15 2258 111 0 0 chr3 84877676 84877974 -142646604 + AluSx SINE Alu 1 298 -14 734 163 0 0 chr3 84878114 84878237 -142646341 - AluSq/x SINE Alu -187 125 3 199 316 184 7 chr3 84878286 84878438 -142646140 + MIR3 SINE MIR 26 204 -4 401 350 126 0 chr3 84878480 84878694 -142645884 - MIR SINE MIR -18 244 4 2231 91 10 0 chr3 84878803 84879100 -142645478 - AluSx SINE Alu -12 300 1 618 107 27 36 chr3 84879134 84879246 -142645332 - FLAM_C SINE Alu -31 112 2 411 258 60 20 chr3 84879290 84879441 -142645137 - MIR SINE MIR -72 190 34 234 62 0 0 chr3 84879481 84879513 -142645065 + (CTGGGG)n Simple_repeat Simple_repeat 5 36 0 290 269 92 64 chr3 84880284 84880425 -142644153 + L2 LINE L2 2911 3055 -217 28 61 0 0 chr3 84880488 84880537 -142644041 + AT_rich Low_complexity Low_complexity 1 49 0 2218 113 3 13 chr3 84880683 84880818 -142643760 + AluSq SINE Alu 1 136 -177 2286 104 0 3 chr3 84880818 84881115 -142643463 + AluY SINE Alu 1 296 -15 2218 113 3 13 chr3 84881115 84881281 -142643297 + AluSq SINE Alu 136 299 -14 278 139 0 0 chr3 84881446 84881489 -142643089 + Alu SINE Alu 2 44 -257 1334 133 6 0 chr3 84881489 84881692 -142642886 + AluSg/x SINE Alu 102 305 0 363 137 7 0 chr3 84881713 84881781 -142642797 + Alu SINE Alu 245 301 -1 1715 173 13 13 chr3 84881806 84882113 -142642465 + AluJb SINE Alu 1 307 -5 242 280 154 35 chr3 84882294 84882437 -142642141 - MLT1K LTR MaLR -4 584 425 348 214 0 12 chr3 84883256 84883340 -142641238 - MIR3 SINE MIR -25 183 101 395 267 119 20 chr3 84883370 84883572 -142641006 - MIR SINE MIR -1 261 40 226 296 118 15 chr3 84883724 84883859 -142640719 - MIR SINE MIR -71 191 43 2213 117 0 3 chr3 84884584 84884882 -142639696 + AluSx SINE Alu 5 301 -11 355 100 20 0 chr3 84884894 84884944 -142639634 - Alu SINE Alu -249 51 1 2354 243 179 36 chr3 84884952 84885069 -142639509 - L2 LINE L2 -239 3074 2975 1966 89 60 21 chr3 84885069 84885350 -142639228 - AluSc SINE Alu -17 292 1 2354 243 179 36 chr3 84885350 84885553 -142639025 - L2 LINE L2 -338 2975 2802 1816 150 31 3 chr3 84885553 84885847 -142638731 - AluJo SINE Alu -10 302 1 2354 243 179 36 chr3 84885847 84886823 -142637755 - L2 LINE L2 -511 2802 1601 1905 126 0 11 chr3 84886927 84887204 -142637374 - AluSc SINE Alu -35 274 1 587 290 73 57 chr3 84887307 84887446 -142637132 - MIR SINE MIR -10 252 106 1756 151 10 27 chr3 84887446 84887584 -142636994 + AluJo SINE Alu 1 140 -172 2286 116 0 0 chr3 84887584 84887887 -142636691 + AluSx SINE Alu 1 303 -9 1756 151 10 27 chr3 84887887 84888046 -142636532 + AluJo SINE Alu 140 293 -19 587 290 73 57 chr3 84888046 84888154 -142636424 - MIR SINE MIR -156 106 1 324 279 0 0 chr3 84888840 84888926 -142635652 - MIR SINE MIR -6 256 171 207 0 0 0 chr3 84889202 84889225 -142635353 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1177 124 0 23 chr3 84889234 84889411 -142635167 - AluSg/x SINE Alu -3 309 137 1832 136 0 0 chr3 84889411 84889669 -142634909 - AluSx SINE Alu -15 297 40 1912 176 22 16 chr3 84889939 84890303 -142634275 - MLT1A2 LTR MaLR -5 369 4 255 267 11 33 chr3 84890673 84890763 -142633815 - MER5A DNA MER1_type -101 88 1 24 53 0 0 chr3 84890883 84890921 -142633657 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr3 84891206 84891236 -142633342 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 84892773 84892795 -142631783 + AT_rich Low_complexity Low_complexity 1 22 0 1052 183 216 17 chr3 84893030 84893271 -142631307 + AluJb SINE Alu 3 291 -11 1105 169 61 70 chr3 84893789 84894101 -142630477 - L1MC5 LINE L1 -941 7054 6692 1948 113 3 57 chr3 84894201 84894502 -142630076 + AluJb SINE Alu 1 285 -27 244 143 0 129 chr3 84894542 84894555 -142630023 - L1MB3 LINE L1 -36 6147 6134 2046 118 37 0 chr3 84894555 84894852 -142629726 - AluSc SINE Alu -1 308 1 244 143 0 129 chr3 84894852 84894908 -142629670 - L1MB3 LINE L1 -49 6134 6087 * 1214 149 109 43 chr3 84894904 84895180 -142629398 - L1MA4 LINE L1 -282 6018 5725 1380 183 55 29 chr3 84895191 84895465 -142629113 - AluJo SINE Alu -25 287 7 387 116 81 47 chr3 84895468 84895554 -142629024 - L1MA4 LINE L1 -560 5740 5652 2481 83 0 6 chr3 84895555 84895867 -142628711 - AluSg SINE Alu 0 310 1 1942 130 7 13 chr3 84896138 84896439 -142628139 - AluSx SINE Alu -13 299 1 2232 114 0 3 chr3 84896618 84896925 -142627653 - AluSx SINE Alu -6 306 1 1026 125 0 0 chr3 84896925 84897061 -142627517 - AluSq/x SINE Alu -176 136 1 977 110 18 37 chr3 84897102 84897265 -142627313 - BC200 scRNA scRNA -39 161 2 1280 192 75 39 chr3 84897390 84897671 -142626907 - AluSx SINE Alu -21 291 1 611 110 14 14 chr3 84897770 84897915 -142626663 + (TG)n Simple_repeat Simple_repeat 1 145 0 1533 132 136 0 chr3 84897915 84898166 -142626412 - AluY SINE Alu -26 285 1 26 0 0 0 chr3 84898319 84898345 -142626233 + AT_rich Low_complexity Low_complexity 1 26 0 2059 125 0 3 chr3 84898519 84898815 -142625763 + AluSx SINE Alu 1 295 -17 1407 171 92 40 chr3 84899367 84899619 -142624959 + MER2 DNA MER2_type 1 275 -69 2139 122 0 7 chr3 84899619 84899922 -142624656 - AluY SINE Alu -10 301 1 1407 171 92 40 chr3 84899922 84899996 -142624582 + MER2 DNA MER2_type 275 344 0 21 0 0 0 chr3 84900224 84900245 -142624333 + AT_rich Low_complexity Low_complexity 1 21 0 2152 125 7 7 chr3 84900956 84901261 -142623317 - AluSx SINE Alu -5 307 3 353 291 160 69 chr3 84901279 84901605 -142622973 - L1MC4a LINE L1 -1963 5845 5473 1820 149 7 39 chr3 84901605 84901914 -142622664 - AluJo SINE Alu -7 305 7 353 291 160 69 chr3 84901914 84901993 -142622585 - L1MC4a LINE L1 -2335 5473 5403 293 245 0 21 chr3 84902097 84902191 -142622387 - L1MC5 LINE L1 -752 7209 7118 655 215 0 15 chr3 84902191 84902326 -142622252 - FLAM_C SINE Alu 0 133 1 1993 130 18 0 chr3 84902513 84902797 -142621781 - AluSx SINE Alu -23 289 1 1988 115 38 0 chr3 84902804 84902962 -142621616 - AluSx SINE Alu -13 299 124 2251 104 0 3 chr3 84902962 84903260 -142621318 - AluY SINE Alu -14 297 1 1988 115 38 0 chr3 84903260 84903389 -142621189 - AluSx SINE Alu -188 124 1 22 56 0 0 chr3 84903419 84903455 -142621123 + AT_rich Low_complexity Low_complexity 1 36 0 890 194 51 6 chr3 84903631 84903806 -142620772 + MER20 DNA MER1_type 33 215 -4 238 152 0 0 chr3 84904057 84904103 -142620475 - Alu SINE Alu 0 308 263 1715 152 7 28 chr3 84904132 84904422 -142620156 - AluSx SINE Alu -3 309 26 571 186 17 17 chr3 84904423 84904541 -142620037 - AluJo/FLAM SINE Alu -184 118 1 1557 106 0 5 chr3 84905056 84905264 -142619314 - AluSg/x SINE Alu -19 293 87 958 236 96 14 chr3 84905496 84905716 -142618862 - MER8 DNA MER2_type 0 239 2 617 0 14 0 chr3 84905730 84905803 -142618775 + (TTATG)n Simple_repeat Simple_repeat 3 76 0 641 195 0 0 chr3 84905809 84905922 -142618656 - AluJb SINE Alu -30 282 170 1022 194 43 11 chr3 84906363 84906662 -142617916 + Tigger3(Golem) DNA MER2_type 6 3038 0 2253 118 0 0 chr3 84906707 84907011 -142617567 - AluSx SINE Alu -8 304 1 555 191 85 21 chr3 84907383 84907524 -142617054 - MLT1A1 LTR MaLR 0 365 216 595 180 72 0 chr3 84907529 84907640 -142616938 - FRAM SINE Alu -8 168 50 1698 182 3 13 chr3 84907930 84908232 -142616346 - AluJb SINE Alu -13 299 1 334 267 47 0 chr3 84908411 84908497 -142616081 - L2 LINE L2 -10 3262 3173 297 0 0 0 chr3 84908545 84908578 -142616000 + (TG)n Simple_repeat Simple_repeat 2 34 0 1905 165 7 0 chr3 84908597 84908894 -142615684 - AluSx SINE Alu -13 299 1 243 250 69 56 chr3 84909384 84909528 -142615050 + HsTC2 DNA Tc2 29 1892 -6 2206 105 13 19 chr3 84909868 84910183 -142614395 - AluSp SINE Alu 0 313 1 21 36 0 0 chr3 84910742 84910770 -142613808 + AT_rich Low_complexity Low_complexity 1 28 0 280 319 0 0 chr3 84911321 84911393 -142613185 + CT-rich Low_complexity Low_complexity 4 75 0 187 308 169 23 chr3 84912674 84912846 -142611732 + L2 LINE L2 2591 2787 -527 1316 94 52 52 chr3 84913307 84913520 -142611058 - MER30 DNA MER1_type -17 213 1 702 248 48 24 chr3 84913553 84913763 -142610815 + MIR SINE MIR 14 228 -34 2053 103 10 7 chr3 84913831 84914122 -142610456 - AluSc SINE Alu -17 292 1 259 189 0 0 chr3 84914263 84914316 -142610262 - L2 LINE L2 0 3313 3261 2178 91 20 20 chr3 84914502 84914799 -142609779 - AluSc SINE Alu -12 297 1 441 0 0 0 chr3 84914799 84914848 -142609730 + (TG)n Simple_repeat Simple_repeat 2 50 0 30 0 0 0 chr3 84914853 84914883 -142609695 + AT_rich Low_complexity Low_complexity 1 30 0 528 88 0 0 chr3 84914983 84915092 -142609486 + AluSg/x SINE Alu 214 322 0 1856 150 4 0 chr3 84916209 84916476 -142608102 + AluSx SINE Alu 1 268 -44 850 167 69 0 chr3 84916510 84916678 -142607900 + FRAM SINE Alu 1 170 0 23 33 0 0 chr3 84916765 84916795 -142607783 + AT_rich Low_complexity Low_complexity 1 30 0 1991 126 20 3 chr3 84917031 84917325 -142607253 + AluSx SINE Alu 6 304 -8 219 69 0 0 chr3 84917328 84917357 -142607221 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 25 0 0 0 chr3 84917733 84917758 -142606820 + AT_rich Low_complexity Low_complexity 1 25 0 2272 101 3 7 chr3 84918404 84918700 -142605878 + AluSx SINE Alu 3 297 -15 2123 133 0 0 chr3 84919039 84919339 -142605239 - AluSx SINE Alu -10 302 3 1815 160 0 31 chr3 84919342 84919517 -142605061 - AluJo SINE Alu -3 309 147 2265 134 0 6 chr3 84919517 84919831 -142604747 - AluSx SINE Alu 0 312 1 1815 160 0 31 chr3 84919831 84919974 -142604604 - AluJo SINE Alu -165 147 1 2150 130 0 0 chr3 84920053 84920346 -142604232 - AluSx SINE Alu -17 295 3 1334 178 89 0 chr3 84920351 84920634 -142603944 - AluSg SINE Alu 0 306 1 527 332 24 35 chr3 84922999 84923288 -142601290 - L2 LINE L2 0 3313 3028 260 222 0 0 chr3 84923444 84923489 -142601089 + AluJ/monomer SINE Alu 1 45 -257 357 89 0 0 chr3 84923590 84923635 -142600943 - Alu SINE Alu -255 45 1 191 337 12 12 chr3 84923679 84923762 -142600816 - MIR SINE MIR -160 102 20 2389 102 0 0 chr3 84923843 84924146 -142600432 - AluSg SINE Alu -7 303 1 218 226 245 0 chr3 84924198 84924304 -142600274 + L2 LINE L2 3182 3313 0 195 215 0 31 chr3 84924451 84924516 -142600062 - MIR SINE MIR -35 227 165 727 132 198 102 chr3 84925163 84925360 -142599218 - MER20 DNA MER1_type 0 219 4 1981 147 10 0 chr3 84925497 84925804 -142598774 - AluSx SINE Alu -2 310 1 1352 127 78 81 chr3 84925982 84926145 -142598433 - AluJo SINE Alu -6 306 143 1847 134 23 7 chr3 84926145 84926451 -142598127 - AluSx SINE Alu -1 311 1 1352 127 78 81 chr3 84926451 84926594 -142597984 - AluJo SINE Alu -169 143 1 599 311 58 12 chr3 84926604 84926845 -142597733 - MIR SINE MIR -8 254 3 1685 110 0 0 chr3 84927493 84927729 -142596849 - AluSg/x SINE Alu -5 307 72 878 133 0 16 chr3 84928146 84928274 -142596304 - FLAM_C SINE Alu -7 126 1 283 256 28 60 chr3 84928274 84928400 -142596178 - MIR SINE MIR -71 137 26 2182 123 0 0 chr3 84929446 84929756 -142594822 - AluSx SINE Alu -2 310 1 2299 48 14 0 chr3 84931589 84931882 -142592696 + AluY SINE Alu 1 297 -14 251 239 30 0 chr3 84931904 84931971 -142592607 + CT-rich Low_complexity Low_complexity 2 70 0 2484 49 13 0 chr3 84932707 84933014 -142591564 - AluY SINE Alu 0 311 1 522 165 0 0 chr3 84933019 84933122 -142591456 + CT-rich Low_complexity Low_complexity 2 104 0 2083 134 0 0 chr3 84933153 84933459 -142591119 - AluSx SINE Alu -6 306 1 215 61 30 0 chr3 84933721 84933754 -142590824 + (CA)n Simple_repeat Simple_repeat 2 35 0 2260 84 0 3 chr3 84934083 84934381 -142590197 - AluSq SINE Alu -16 297 1 273 303 204 26 chr3 84935023 84935175 -142589403 - MIR3 SINE MIR -4 204 26 2062 91 0 41 chr3 84935224 84935543 -142589035 + AluSx SINE Alu 3 308 -4 215 163 0 23 chr3 84935621 84935664 -142588914 + GA-rich Low_complexity Low_complexity 1 42 0 875 106 4 208 chr3 84936064 84936173 -142588405 - MER3 DNA MER1_type -13 196 159 2286 94 0 0 chr3 84936173 84936482 -142588096 - AluSg1 SINE Alu 0 309 1 875 106 4 208 chr3 84936482 84936608 -142587970 - MER3 DNA MER1_type -50 159 9 1273 151 124 15 chr3 84937038 84937303 -142587275 + AluJb SINE Alu 1 294 -18 995 241 129 39 chr3 84937359 84937801 -142586777 + MLT1F LTR MaLR 1 652 -2 267 189 77 195 chr3 84937802 84937971 -142586607 - MIR SINE MIR -2 260 112 2002 112 0 0 chr3 84937971 84938248 -142586330 + AluSq SINE Alu 1 277 -36 361 229 19 0 chr3 84938249 84938354 -142586224 + GA-rich Low_complexity Low_complexity 2 108 0 366 262 39 48 chr3 84938355 84938458 -142586120 - MIR SINE MIR -133 129 28 239 243 86 93 chr3 84938722 84938862 -142585716 - L2 LINE L2 -89 3183 3045 180 125 0 0 chr3 84939603 84939635 -142584943 + (TC)n Simple_repeat Simple_repeat 2 33 0 303 140 19 19 chr3 84939636 84939704 -142584874 + MLT2C1 LTR ERVL 351 397 0 2136 165 9 3 chr3 84939708 84940054 -142584524 - MER7A DNA MER2_type 0 346 1 502 300 28 11 chr3 84940111 84940291 -142584287 + MIR SINE MIR 11 193 -69 261 139 0 0 chr3 84940367 84940410 -142584168 - L1MC4 LINE L1 0 8042 8000 1976 125 0 3 chr3 84940414 84940701 -142583877 + AluSx SINE Alu 1 286 -26 344 267 0 0 chr3 84940739 84940829 -142583749 - L1MC4 LINE L1 -137 7905 7816 2518 44 0 0 chr3 84940861 84941157 -142583421 + AluY SINE Alu 1 296 -15 819 180 0 0 chr3 84941257 84941385 -142583193 - AluJb SINE Alu -65 247 120 979 241 159 50 chr3 84941450 84941928 -142582650 - HAL1 LINE L1 -697 1810 1281 * 1470 195 55 5 chr3 84941924 84942483 -142582095 - L1MB4 LINE L1 -7 6173 5479 1696 176 14 0 chr3 84942943 84943238 -142581340 - AluJo SINE Alu -13 299 1 1175 149 137 7 chr3 84943284 84943658 -142580920 + L1M1 LINE L1 5070 5484 -743 991 174 0 0 chr3 84943658 84943825 -142580753 + AluSg/x SINE Alu 136 302 -10 1240 186 0 5 chr3 84943828 84944043 -142580535 + L1M1 LINE L1 5493 5706 -594 334 122 61 0 chr3 84944161 84944210 -142580368 - Alu SINE Alu -250 52 1 609 280 104 42 chr3 84944277 84944487 -142580091 - LTR16C LTR ERVL -177 314 119 2018 85 0 4 chr3 84944487 84944758 -142579820 + AluSx SINE Alu 3 272 -40 915 58 29 0 chr3 84944758 84944896 -142579682 + (GAAA)n Simple_repeat Simple_repeat 3 144 0 609 280 104 42 chr3 84944896 84944973 -142579605 - LTR16C LTR ERVL -371 120 8 267 272 134 65 chr3 84945127 84945373 -142579205 - L3 LINE CR1 -290 1287 1025 967 252 25 18 chr3 84945394 84945676 -142578902 + MER58B DNA MER1_type 56 339 -2 2426 42 0 0 chr3 84945731 84946020 -142578558 + AluY SINE Alu 1 289 -22 507 254 32 122 chr3 84946180 84946268 -142578310 - L1MC4a LINE L1 -1838 5970 5876 2271 95 0 0 chr3 84946268 84946572 -142578006 - AluSx SINE Alu -6 306 3 507 254 32 122 chr3 84946572 84946885 -142577693 - L1MC4a LINE L1 -1932 5876 5605 24 0 0 29 chr3 84946893 84946909 -142577669 + AT_rich Low_complexity Low_complexity 1 16 -18 2169 106 6 0 chr3 84946909 84947220 -142577358 - AluSp SINE Alu 0 313 1 24 0 0 29 chr3 84947220 84947238 -142577340 + AT_rich Low_complexity Low_complexity 16 34 0 517 92 0 0 chr3 84947238 84947303 -142577275 - U6 snRNA snRNA -41 66 2 1947 144 3 0 chr3 84947321 84947626 -142576952 - AluSq SINE Alu -7 306 1 185 178 22 0 chr3 84947673 84947718 -142576860 + CT-rich Low_complexity Low_complexity 2 47 0 1180 181 36 65 chr3 84948072 84948349 -142576229 + AluJb SINE Alu 1 269 -43 29 0 0 0 chr3 84948535 84948564 -142576014 + AT_rich Low_complexity Low_complexity 1 29 0 1509 104 36 113 chr3 84948817 84949152 -142575426 - AluYb8 SINE Alu -9 309 1 242 119 24 0 chr3 84949518 84949535 -142575043 - Alu SINE Alu -149 154 139 1568 137 95 11 chr3 84949535 84949819 -142574759 - AluSx SINE Alu -4 308 1 242 119 24 0 chr3 84949819 84949843 -142574735 - Alu SINE Alu -164 139 112 1735 129 20 41 chr3 84950710 84951005 -142573573 - AluSx SINE Alu -19 293 5 487 298 77 6 chr3 84951045 84951226 -142573352 + MIR SINE MIR 62 255 -7 263 263 132 18 chr3 84951413 84951527 -142573051 + MIR SINE MIR 103 229 -33 190 283 53 72 chr3 84951632 84951781 -142572797 + MIR3 SINE MIR 15 160 -48 350 197 141 49 chr3 84951781 84951923 -142572655 - MER5A DNA MER1_type 0 189 35 2203 103 0 3 chr3 84952004 84952314 -142572264 + AluSg SINE Alu 1 309 -1 22 0 0 0 chr3 84952776 84952798 -142571780 + AT_rich Low_complexity Low_complexity 1 22 0 206 62 31 0 chr3 84952827 84952859 -142571719 + (CA)n Simple_repeat Simple_repeat 2 34 0 552 283 26 37 chr3 84952881 84953031 -142571547 + MIR SINE MIR 25 174 -88 1781 202 119 49 chr3 84953031 84953586 -142570992 + MLT1G1 LTR MaLR 1 594 -1 552 283 26 37 chr3 84953586 84953626 -142570952 + MIR SINE MIR 174 213 -49 369 330 20 10 chr3 84953692 84953895 -142570683 + L1M4 LINE L1 2574 2778 -3368 704 281 84 29 chr3 84953899 84954209 -142570369 - L2 LINE L2 0 3313 2987 287 290 57 56 chr3 84954315 84954485 -142570093 - MER5A DNA MER1_type 0 189 1 504 236 198 6 chr3 84954557 84954714 -142569864 + MER5A DNA MER1_type 1 187 -2 1127 134 0 0 chr3 84956697 84956869 -142567709 - AluSg/x SINE Alu -13 299 128 534 318 56 14 chr3 84957069 84957283 -142567295 - MIR SINE MIR -39 223 1 * 658 300 45 53 chr3 84957255 84957495 -142567083 - L2 LINE L2 0 3313 3077 2089 119 0 3 chr3 84957495 84957798 -142566780 - AluSx SINE Alu -10 302 1 658 300 45 53 chr3 84957798 84958024 -142566554 - L2 LINE L2 -236 3077 2851 295 345 12 0 chr3 84958517 84958682 -142565896 + L1MC4a LINE L1 5732 5898 -1910 205 319 106 51 chr3 84958826 84959098 -142565480 + L2 LINE L2 2722 2978 -294 2208 98 0 3 chr3 84959098 84959395 -142565183 - AluSg SINE Alu -14 296 1 205 319 106 51 chr3 84959395 84959639 -142564939 + L2 LINE L2 2978 3270 -2 432 0 0 0 chr3 84959667 84959715 -142564863 + (TG)n Simple_repeat Simple_repeat 1 48 0 1830 118 37 4 chr3 84959715 84959987 -142564591 - AluSx SINE Alu -31 281 1 234 0 0 0 chr3 84960119 84960145 -142564433 + (T)n Simple_repeat Simple_repeat 1 26 0 693 300 52 35 chr3 84960228 84960458 -142564120 + MIR SINE MIR 14 247 -15 457 287 9 0 chr3 84960527 84960635 -142563943 + L2 LINE L2 3201 3309 -4 1345 85 0 0 chr3 84960681 84960858 -142563720 - AluY SINE Alu -4 307 131 1886 127 0 43 chr3 84960920 84961244 -142563334 - AluSx SINE Alu -2 310 1 189 0 0 0 chr3 84961244 84961265 -142563313 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 2034 98 29 0 chr3 84961267 84961541 -142563037 - AluSx SINE Alu -30 282 1 2143 110 0 0 chr3 84961861 84962153 -142562425 - AluSg SINE Alu -14 296 5 660 317 53 12 chr3 84962191 84962434 -142562144 - MIR SINE MIR -8 254 2 587 213 6 62 chr3 84962438 84962598 -142561980 + MER103 DNA DNA 11 161 -5 898 206 27 0 chr3 84963311 84963495 -142561083 - MER5A DNA MER1_type 0 189 1 1882 167 60 20 chr3 84963557 84963918 -142560660 - L1MB5 LINE L1 -8 6166 5786 219 69 0 0 chr3 84963918 84963947 -142560631 + (TG)n Simple_repeat Simple_repeat 2 30 0 1882 167 60 20 chr3 84963947 84963986 -142560592 - L1MB5 LINE L1 -388 5786 5750 522 279 20 40 chr3 84963986 84964045 -142560533 + MIR SINE MIR 66 125 -137 1450 210 0 10 chr3 84964045 84964345 -142560233 - AluJb SINE Alu -15 297 1 522 279 20 40 chr3 84964345 84964486 -142560092 + MIR SINE MIR 125 262 0 277 326 0 0 chr3 84964498 84964584 -142559994 - LTR16C LTR ERVL 0 491 406 1878 139 0 7 chr3 84964585 84964880 -142559698 - AluSx SINE Alu -19 293 1 233 35 0 0 chr3 84965028 84965057 -142559521 - AluSg SINE Alu -271 29 1 308 309 162 16 chr3 84965127 84965303 -142559275 - MLT1L LTR MaLR -95 463 239 1457 76 0 0 chr3 84966053 84966238 -142558340 + U2 snRNA snRNA 3 187 -1 3624 70 19 6 chr3 84966565 84967052 -142557526 - L1PA8 LINE L1 0 6172 5680 1013 267 77 47 chr3 84967555 84967959 -142556619 + LTR16C LTR ERVL 4 419 -72 2055 99 3 24 chr3 84967959 84968253 -142556325 + AluSx SINE Alu 14 301 -11 481 319 42 10 chr3 84970482 84970688 -142553890 + MIR SINE MIR 14 225 -37 648 273 80 13 chr3 84970811 84971049 -142553529 - MIR SINE MIR -1 261 8 37 0 0 0 chr3 84971324 84971361 -142553217 + AT_rich Low_complexity Low_complexity 1 37 0 438 161 306 16 chr3 84971506 84971630 -142552948 + MIR SINE MIR 28 187 -75 1893 148 0 10 chr3 84971749 84972047 -142552531 + AluSx SINE Alu 1 295 -17 300 71 36 71 chr3 84972072 84972128 -142552450 + Alu SINE Alu 247 300 0 1937 128 23 0 chr3 84972230 84972536 -142552042 - AluSq SINE Alu 0 313 1 265 277 20 10 chr3 84972634 84972735 -142551843 - L1MC/D LINE L1 -1957 5851 5750 1080 252 100 19 chr3 84972969 84973424 -142551154 - HsTC2c DNA Tc2 -14 715 122 339 232 139 26 chr3 84973579 84973730 -142550848 - L2 LINE L2 -123 3190 3023 2098 118 0 13 chr3 84973993 84974299 -142550279 - AluSx SINE Alu -10 302 1 185 204 136 0 chr3 84974350 84974394 -142550184 + L2 LINE L2 3222 3271 -1 303 274 167 0 chr3 84974454 84974556 -142550022 - L1MC4a LINE L1 -1732 6076 5958 746 228 89 0 chr3 84974557 84974715 -142549863 + AluJb SINE Alu 122 293 -19 1370 184 53 43 chr3 84974735 84975017 -142549561 + AluJo SINE Alu 2 286 -16 446 115 58 23 chr3 84975049 84975223 -142549355 + (TCTA)n Simple_repeat Simple_repeat 1 180 0 497 231 119 17 chr3 84975246 84975297 -142549281 - L1MC4a LINE L1 -444 5677 5633 2116 106 0 13 chr3 84975297 84975600 -142548978 - AluSx SINE Alu -13 299 1 497 231 119 17 chr3 84975600 84975972 -142548606 - L1MC4a LINE L1 -488 5633 5279 226 0 0 0 chr3 84976184 84976209 -142548369 + (TTTTA)n Simple_repeat Simple_repeat 2 125 0 670 200 14 41 chr3 84976209 84976354 -142548224 - FRAM SINE Alu -30 146 6 356 281 60 51 chr3 84976477 84976801 -142547777 - L1MC4a LINE L1 -1226 4920 4600 181 0 0 0 chr3 84976801 84976821 -142547757 + (TTTA)n Simple_repeat Simple_repeat 1 104 0 2060 117 0 3 chr3 84976821 84977103 -142547475 - AluSx SINE Alu -31 281 1 356 281 60 51 chr3 84977103 84977288 -142547290 - L1MC4a LINE L1 -1545 4601 4399 1276 188 91 22 chr3 84977299 84977618 -142546960 + MER58B DNA MER1_type 1 341 0 2004 140 13 3 chr3 84977623 84977930 -142546648 - AluSx SINE Alu 0 312 3 2319 103 0 0 chr3 84977947 84978249 -142546329 - AluSc SINE Alu -7 302 1 1826 142 32 26 chr3 84979185 84979495 -142545083 - AluSx SINE Alu 0 312 1 1895 143 45 0 chr3 84979675 84979962 -142544616 - AluSg SINE Alu -10 300 1 527 196 0 0 chr3 84980277 84980379 -142544199 + U13 snRNA snRNA 1 102 -2 2316 109 0 0 chr3 84981081 84981393 -142543185 + AluSx SINE Alu 1 312 0 415 275 36 14 chr3 84981405 84981557 -142543021 - MIR SINE MIR -62 146 35 1191 104 44 27 chr3 84981690 84981873 -142542705 - AluSg SINE Alu -124 186 1 3206 129 34 31 chr3 84981874 84982486 -142542092 + L1MA4 LINE L1 5681 6294 -6 654 230 105 20 chr3 84983406 84983606 -142540972 + MER20 DNA MER1_type 1 217 -2 1779 105 0 72 chr3 84984321 84984598 -142539980 - AluSg SINE Alu 0 310 54 2188 107 3 0 chr3 84985089 84985380 -142539198 - AluSq SINE Alu -21 292 1 1727 87 9 9 chr3 84985505 84985736 -142538842 + AluSq SINE Alu 70 300 -13 392 298 98 57 chr3 84985830 84986166 -142538412 + L1ME4a LINE L1 5384 5762 -359 1932 134 6 42 chr3 84986166 84986479 -142538099 - AluSx SINE Alu -10 302 1 392 298 98 57 chr3 84986479 84986562 -142538016 + L1ME4a LINE L1 5762 5840 -281 234 222 28 0 chr3 84986818 84986890 -142537688 - L1M4 LINE L1 -1278 4868 4795 2318 98 0 3 chr3 84988024 84988329 -142536249 - AluSc SINE Alu -5 304 1 1470 171 51 10 chr3 84989130 84989423 -142535155 - L1M4 LINE L1 -541 5637 5333 * 1489 183 89 29 chr3 84989419 84989887 -142534691 - L1MB3 LINE L1 -17 6166 5728 210 37 0 0 chr3 84989887 84989914 -142534664 + (TTG)n Simple_repeat Simple_repeat 1 27 0 1489 183 89 29 chr3 84989914 84989984 -142534594 - L1MB3 LINE L1 -455 5728 5664 1833 123 54 4 chr3 84989984 84990260 -142534318 + AluSg SINE Alu 1 290 -20 1489 183 89 29 chr3 84990260 84990664 -142533914 - L1MB3 LINE L1 -519 5664 5099 1699 148 3 34 chr3 84990678 84990969 -142533609 - AluJo SINE Alu -30 282 1 1868 226 58 34 chr3 84991022 84991193 -142533385 - Charlie1a DNA MER1_type -2065 696 531 1873 121 67 7 chr3 84991193 84991475 -142533103 - AluSx SINE Alu -13 299 1 1868 226 58 34 chr3 84991475 84991926 -142532652 - Charlie1a DNA MER1_type -2230 531 59 23 0 0 0 chr3 84992821 84992844 -142531734 + AT_rich Low_complexity Low_complexity 1 23 0 2238 114 0 3 chr3 84993534 84993840 -142530738 - AluSc SINE Alu -3 306 2 1807 111 18 21 chr3 84993915 84994220 -142530358 - AluSg SINE Alu 0 304 1 2214 108 0 3 chr3 84994883 84995179 -142529399 + AluY SINE Alu 1 295 -16 49 60 0 0 chr3 84995410 84995494 -142529084 + AT_rich Low_complexity Low_complexity 1 84 0 1850 132 21 0 chr3 84995598 84995777 -142528801 - AluSx SINE Alu 0 315 126 189 74 0 0 chr3 84995777 84995804 -142528774 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1850 132 21 0 chr3 84995804 84995933 -142528645 - AluSx SINE Alu -189 126 1 27 29 0 0 chr3 84996117 84996151 -142528427 + AT_rich Low_complexity Low_complexity 1 34 0 408 280 143 70 chr3 84996368 84996581 -142527997 - L1MC4a LINE L1 -1959 5849 5653 2282 103 0 0 chr3 84996581 84996883 -142527695 - AluSp SINE Alu -11 302 1 408 280 143 70 chr3 84996883 84997215 -142527363 - L1MC4a LINE L1 -2155 5653 5264 2320 83 3 0 chr3 84997291 84997593 -142526985 - AluY SINE Alu -8 303 1 188 359 120 34 chr3 84997625 84997742 -142526836 + L2 LINE L2 3121 3247 -25 225 266 16 0 chr3 84997756 84997820 -142526758 + (TGAA)n Simple_repeat Simple_repeat 2 66 0 210 163 0 23 chr3 84997902 84997945 -142526633 + T-rich Low_complexity Low_complexity 2 43 0 2374 77 0 0 chr3 84999297 84999594 -142524984 + AluY SINE Alu 1 297 -14 1584 114 0 5 chr3 84999676 84999887 -142524691 - AluSx SINE Alu -102 210 1 258 273 47 81 chr3 85000883 85001055 -142523523 - MIR SINE MIR 0 262 97 306 0 0 0 chr3 85001087 85001121 -142523457 + (TG)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr3 85001121 85001144 -142523434 + AT_rich Low_complexity Low_complexity 1 23 0 907 116 14 48 chr3 85001333 85001479 -142523099 - AluSq SINE Alu -17 296 156 614 87 11 11 chr3 85001479 85001571 -142523007 - AluSq SINE Alu -220 92 1 226 360 22 11 chr3 85003432 85003521 -142521057 + MIR SINE MIR 4 93 -169 1776 99 46 0 chr3 85004189 85004472 -142520106 - L1MA3 LINE L1 -5 6300 6005 241 208 0 0 chr3 85005035 85005083 -142519495 - MER103 DNA DNA -49 117 70 2221 113 7 0 chr3 85005323 85005624 -142518954 + AluSg SINE Alu 1 303 -7 303 284 314 0 chr3 85006041 85006210 -142518368 + MIR SINE MIR 39 260 -2 784 180 90 76 chr3 85007156 85007367 -142517211 - MER20 DNA MER1_type -5 214 1 645 206 63 16 chr3 85007402 85007528 -142517050 - FRAM SINE Alu -44 132 1 198 0 0 0 chr3 85008985 85009007 -142515571 + (A)n Simple_repeat Simple_repeat 1 22 0 1941 139 0 20 chr3 85009009 85009303 -142515275 + AluSx SINE Alu 3 290 -22 213 132 0 0 chr3 85010774 85010812 -142513766 + (GAA)n Simple_repeat Simple_repeat 3 40 0 22 0 0 0 chr3 85011649 85011671 -142512907 + AT_rich Low_complexity Low_complexity 1 22 0 273 57 0 0 chr3 85011898 85011933 -142512645 + (TA)n Simple_repeat Simple_repeat 1 35 0 21 57 0 0 chr3 85013221 85013256 -142511322 + AT_rich Low_complexity Low_complexity 1 35 0 796 187 9 61 chr3 85015234 85015365 -142509213 + MER3 DNA MER1_type 5 122 -87 2068 128 7 10 chr3 85015365 85015671 -142508907 - AluSq SINE Alu -8 305 1 796 187 9 61 chr3 85015671 85015753 -142508825 + MER3 DNA MER1_type 122 207 -2 204 313 62 0 chr3 85015762 85015826 -142508752 + MIR SINE MIR 8 75 -187 22 0 0 0 chr3 85016028 85016050 -142508528 + AT_rich Low_complexity Low_complexity 1 22 0 250 265 37 73 chr3 85016703 85016839 -142507739 - L2 LINE L2 -70 3243 3113 1908 140 0 54 chr3 85016971 85017286 -142507292 - AluSx SINE Alu -13 299 2 459 152 89 45 chr3 85017287 85017399 -142507179 - FLAM_A SINE Alu -6 136 20 937 171 21 0 chr3 85017441 85017634 -142506944 - L1MA5 LINE L1 0 6300 6104 760 142 9 0 chr3 85017634 85017747 -142506831 + FLAM_C SINE Alu 2 115 -28 1315 183 119 40 chr3 85017892 85018167 -142506411 + L1MD3 LINE L1 7589 7903 -92 2087 147 0 16 chr3 85018167 85018481 -142506097 + AluJb SINE Alu 1 309 -3 1315 183 119 40 chr3 85018481 85018582 -142505996 + L1MD3 LINE L1 7903 7995 0 41 103 0 0 chr3 85018807 85018953 -142505625 + AT_rich Low_complexity Low_complexity 1 146 0 806 218 82 48 chr3 85019158 85019474 -142505104 + MLT1K LTR MaLR 241 567 -21 270 296 10 113 chr3 85019589 85019792 -142504786 + MIR SINE MIR 39 220 -42 2048 157 0 6 chr3 85020065 85020378 -142504200 + AluJb SINE Alu 1 311 -1 218 253 120 13 chr3 85020416 85020491 -142504087 - L2 LINE L2 -23 3290 3208 1550 122 122 19 chr3 85020704 85020966 -142503612 - AluSg1 SINE Alu -16 293 5 188 211 0 19 chr3 85022099 85022151 -142502427 + CT-rich Low_complexity Low_complexity 4 54 0 189 0 0 0 chr3 85022347 85022368 -142502210 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1157 170 22 125 chr3 85022368 85022530 -142502048 - AluY SINE Alu -32 279 163 2222 101 7 0 chr3 85022530 85022818 -142501760 + AluSg SINE Alu 1 290 -20 1157 170 22 125 chr3 85022818 85022966 -142501612 - AluY SINE Alu -148 163 1 21 0 0 0 chr3 85023953 85023974 -142500604 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chr3 85024183 85024224 -142500354 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 247 326 33 11 chr3 85024278 85024370 -142500208 + MIR SINE MIR 69 162 -100 2059 146 0 26 chr3 85024603 85024912 -142499666 - AluSx SINE Alu -11 301 1 398 265 65 100 chr3 85024967 85025428 -142499150 + MLT1K LTR MaLR 142 586 -2 2756 179 8 6 chr3 85025992 85026477 -142498101 - MER66B LTR ERV1 0 486 1 2959 150 45 107 chr3 85026652 85027610 -142496968 + L1MB7 LINE L1 5103 6011 -173 624 243 64 12 chr3 85028384 85028557 -142496021 - MIR SINE MIR 0 262 81 285 250 13 0 chr3 85028615 85028691 -142495887 + MER103 DNA DNA 28 104 -62 205 267 26 86 chr3 85028733 85028849 -142495729 - MIR SINE MIR -152 110 2 263 208 68 198 chr3 85029346 85029553 -142495025 - MLT1H LTR MaLR -146 403 224 3817 204 52 48 chr3 85029620 85029669 -142494909 - L1MD1 LINE L1 -22 6220 6173 2308 102 14 0 chr3 85029669 85029962 -142494616 + AluSx SINE Alu 1 297 -15 3817 204 52 48 chr3 85029962 85030100 -142494478 - L1MD1 LINE L1 -69 6173 6037 273 98 0 0 chr3 85030100 85030141 -142494437 + (TG)n Simple_repeat Simple_repeat 2 42 0 3817 204 52 48 chr3 85030141 85030192 -142494386 - L1MD1 LINE L1 -205 6037 5988 2074 121 7 7 chr3 85030192 85030482 -142494096 - AluSx SINE Alu -22 290 1 3817 204 52 48 chr3 85030482 85032111 -142492467 - L1MD1 LINE L1 -254 5988 4338 1836 167 94 0 chr3 85032111 85032429 -142492149 - MER7A DNA MER2_type 0 346 1 3817 204 52 48 chr3 85032429 85032447 -142492131 - L1MD1 LINE L1 -1904 4338 4322 2386 76 0 16 chr3 85032447 85032750 -142491828 + AluSc SINE Alu 1 298 -11 2349 94 0 0 chr3 85032942 85033239 -142491339 - AluSc SINE Alu -12 297 1 1514 191 12 32 chr3 85033244 85033590 -142490988 - L1MD1 LINE L1 -3222 2924 2586 577 274 34 11 chr3 85033718 85033893 -142490685 - L1MD1 LINE L1 -3576 2570 2392 2172 122 0 7 chr3 85033975 85034278 -142490300 - AluSq SINE Alu -12 301 1 1275 201 82 7 chr3 85034654 85034763 -142489815 + AluJo SINE Alu 1 100 -212 273 98 0 0 chr3 85034763 85034804 -142489774 + (TAA)n Simple_repeat Simple_repeat 2 42 0 1275 201 82 7 chr3 85034804 85034973 -142489605 + AluJo SINE Alu 100 300 -12 1917 187 19 25 chr3 85035016 85035379 -142489199 + MLT1A1 LTR MaLR 5 365 0 1881 184 0 0 chr3 85035491 85035790 -142488788 - AluJo SINE Alu -13 299 1 310 313 7 42 chr3 85036275 85036419 -142488159 + L2 LINE L2 3160 3298 -15 571 53 0 0 chr3 85038242 85038318 -142486260 - L1PA4 LINE L1 0 6155 6080 511 69 28 0 chr3 85038331 85038403 -142486175 - L1PA4 LINE L1 -2 6153 6080 22 111 0 0 chr3 85038795 85038894 -142485684 + AT_rich Low_complexity Low_complexity 1 99 0 448 216 10 10 chr3 85039343 85039445 -142485133 - MER103 DNA DNA -47 119 18 468 313 58 16 chr3 85039462 85039705 -142484873 + MIR SINE MIR 2 254 -8 2197 117 0 0 chr3 85039743 85040034 -142484544 + AluSg SINE Alu 5 295 -15 1350 173 30 4 chr3 85040353 85040590 -142483988 + AluSx SINE Alu 1 243 -69 448 289 0 13 chr3 85041493 85041642 -142482936 + LTR33 LTR ERVL 1 147 -374 1779 161 10 0 chr3 85043271 85043562 -142481016 + AluJb SINE Alu 1 294 -18 271 233 22 67 chr3 85044163 85044253 -142480325 + L2 LINE L2 2431 2516 -798 2076 153 88 6 chr3 85044353 85044707 -142479871 - MSTB LTR MaLR -43 383 1 7306 60 0 0 chr3 85044738 85045907 -142478671 - L1PA6 LINE L1 0 6154 4985 2203 120 3 0 chr3 85045907 85046215 -142478363 - AluSx SINE Alu -1 311 3 376 129 0 0 chr3 85046234 85046296 -142478282 - L1PA16 LINE L1 -7 6159 6098 436 224 20 10 chr3 85046297 85046395 -142478183 - L1PA16 LINE L1 -105 6061 5963 1293 161 26 0 chr3 85046474 85046704 -142477874 - L1PA13 LINE L1 -5 6158 5923 1305 171 27 7 chr3 85046707 85047005 -142477573 - AluY SINE Alu -7 304 1 973 163 0 22 chr3 85047130 85047331 -142477247 - L1M4 LINE L1 -721 5453 5260 413 241 50 28 chr3 85047421 85047562 -142477016 + MER103 DNA DNA 22 165 -1 2312 101 0 0 chr3 85048019 85048315 -142476263 + AluY SINE Alu 1 296 -15 288 274 146 55 chr3 85048659 85048823 -142475755 + MER20B DNA MER1_type 1 179 -604 203 321 36 12 chr3 85048948 85049032 -142475546 + L2 LINE L2 2888 2973 -340 985 289 71 45 chr3 85049174 85049488 -142475090 + MLT1I LTR MaLR 19 346 -63 2154 110 0 7 chr3 85049488 85049820 -142474758 - AluSx SINE Alu 0 312 5 985 289 71 45 chr3 85049820 85049886 -142474692 + MLT1I LTR MaLR 346 409 0 2061 138 0 7 chr3 85049912 85050075 -142474503 - AluJb SINE Alu -16 296 134 2343 97 0 3 chr3 85050075 85050384 -142474194 - AluY SINE Alu -3 308 1 2061 138 0 7 chr3 85050384 85050518 -142474060 - AluJb SINE Alu -178 134 1 181 352 46 9 chr3 85050526 85050634 -142473944 + L2 LINE L2 3116 3227 -45 1176 151 0 28 chr3 85050638 85050850 -142473728 - MLT1F1 LTR MaLR 0 542 337 1343 223 61 46 chr3 85051087 85051433 -142473145 - MLT1F1 LTR MaLR -216 351 1 2388 109 0 0 chr3 85052497 85052809 -142471769 - AluSq SINE Alu -1 312 1 751 306 64 39 chr3 85054131 85054374 -142470204 + MER20B DNA MER1_type 1 257 -526 2224 66 37 0 chr3 85054374 85054681 -142469897 - AluY SINE Alu 0 317 1 751 306 64 39 chr3 85054681 85054766 -142469812 + MER20B DNA MER1_type 257 338 -445 930 235 72 0 chr3 85054811 85055075 -142469503 + MER20B DNA MER1_type 440 722 -61 394 237 11 0 chr3 85055512 85055605 -142468973 + MIR SINE MIR 2 95 -167 1476 119 5 0 chr3 85056095 85056297 -142468281 - AluSp SINE Alu -11 302 100 2272 100 0 13 chr3 85056441 85056740 -142467838 - AluSg SINE Alu -15 295 1 3401 209 9 6 chr3 85057119 85057764 -142466814 - MER82 DNA MER2_type -6 647 1 632 186 161 56 chr3 85057828 85057905 -142466673 - MER45A DNA AcHobo -1403 178 111 1918 121 35 17 chr3 85057905 85058229 -142466349 + AluSx SINE Alu 2 312 0 632 186 161 56 chr3 85058229 85058312 -142466266 - MER45A DNA AcHobo -1470 111 1 566 236 89 100 chr3 85058990 85059009 -142465569 + MER102a DNA MER1_type 35 53 -1364 1498 163 49 60 chr3 85059009 85059378 -142465200 - MLT1A1 LTR MaLR 0 365 1 566 236 89 100 chr3 85059378 85059638 -142464940 + MER102a DNA MER1_type 53 311 -19 536 273 107 74 chr3 85060581 85061002 -142463576 - MLT1H1 LTR MaLR -3 552 118 1909 177 23 14 chr3 85061015 85061366 -142463212 + MLT2D LTR ERVL 1 354 -60 207 173 0 0 chr3 85061376 85061428 -142463150 + CT-rich Low_complexity Low_complexity 2 53 0 748 144 23 23 chr3 85063917 85064049 -142460529 - FLAM_A SINE Alu -1 132 1 2203 105 3 0 chr3 85064061 85064356 -142460222 - AluSc SINE Alu -13 296 1 33 35 0 17 chr3 85064728 85064749 -142459829 + AT_rich Low_complexity Low_complexity 1 21 -36 2005 153 3 0 chr3 85064749 85065036 -142459542 - AluSx SINE Alu -24 288 1 33 35 0 17 chr3 85065036 85065072 -142459506 + AT_rich Low_complexity Low_complexity 21 57 0 381 162 0 0 chr3 85065099 85065167 -142459411 + (TA)n Simple_repeat Simple_repeat 2 69 0 346 252 163 0 chr3 85065233 85065356 -142459222 + MER5B DNA MER1_type 2 144 -34 210 250 15 29 chr3 85065744 85065812 -142458766 + L3 LINE CR1 573 639 -938 448 320 35 31 chr3 85065813 85065886 -142458692 + L3 LINE CR1 1338 1409 -168 2434 80 3 0 chr3 85065886 85066185 -142458393 - AluSc SINE Alu -9 300 1 448 320 35 31 chr3 85066185 85066339 -142458239 + L3 LINE CR1 1409 1566 -11 593 248 0 13 chr3 85068124 85068273 -142456305 + LTR33 LTR ERVL 1 147 -374 377 233 0 19 chr3 85068475 85068578 -142456000 + LTR33 LTR ERVL 414 514 -7 384 222 0 14 chr3 85068591 85068663 -142455915 + MER20 DNA MER1_type 1 71 -148 5402 130 21 0 chr3 85068670 85069476 -142455102 - L1PA15 LINE L1 -9 6156 5334 894 143 18 48 chr3 85069476 85069644 -142454934 + MER20 DNA MER1_type 55 217 -2 2424 76 0 13 chr3 85069991 85070295 -142454283 - AluY SINE Alu -11 300 1 24 0 0 0 chr3 85071387 85071411 -142453167 + AT_rich Low_complexity Low_complexity 1 24 0 224 371 43 0 chr3 85072116 85072232 -142452346 - MER5A DNA MER1_type 0 189 69 458 241 11 17 chr3 85073408 85073582 -142450996 + CT-rich Low_complexity Low_complexity 1 173 0 397 292 124 5 chr3 85073860 85074069 -142450509 - MIR SINE MIR -4 258 25 2085 90 3 21 chr3 85074696 85075024 -142449554 + AluSg SINE Alu 1 323 0 452 262 86 32 chr3 85075195 85075416 -142449162 - MER97c DNA MER1_type? -43 1047 815 21 0 0 0 chr3 85075574 85075595 -142448983 + AT_rich Low_complexity Low_complexity 1 21 0 1772 237 36 36 chr3 85075777 85075973 -142448605 - MER97a DNA MER1_type? -289 605 410 2042 146 7 0 chr3 85075973 85076275 -142448303 - AluSx SINE Alu -8 304 1 1772 237 36 36 chr3 85076275 85076606 -142447972 - MER97a DNA MER1_type? -483 411 78 593 222 124 78 chr3 85077741 85078047 -142446531 + LTR33A LTR ERVL 2 321 -202 2112 167 77 15 chr3 85078048 85078449 -142446129 - MSTB LTR MaLR 0 426 1 1807 109 28 0 chr3 85079077 85079324 -142445254 - AluSx SINE Alu -58 254 1 5651 222 36 34 chr3 85079340 85080237 -142444341 - L1MDb LINE L1 -1865 4675 3782 1923 135 3 14 chr3 85080237 85080713 -142443865 - AluSx SINE Alu 0 473 1 5651 222 36 34 chr3 85080713 85081601 -142442977 - L1MDb LINE L1 -2758 3782 2884 1142 222 123 51 chr3 85081601 85081934 -142442644 - MLT1A1 LTR MaLR -8 357 1 4671 248 48 43 chr3 85081934 85082709 -142441869 - L1MDb LINE L1 -3663 2877 2108 2226 113 0 17 chr3 85082709 85083010 -142441568 - AluSg SINE Alu -14 296 1 4671 248 48 43 chr3 85083010 85083056 -142441522 - L1MDb LINE L1 -4432 2108 2064 2097 173 8 8 chr3 85083056 85083421 -142441157 - MLT1A1 LTR MaLR 0 365 1 4671 248 48 43 chr3 85083421 85084575 -142440003 - L1MDb LINE L1 -4476 2064 844 228 318 16 0 chr3 85084812 85084875 -142439703 - L1MDb LINE L1 -6151 392 329 791 248 71 13 chr3 85085163 85085419 -142439159 - L1MDb LINE L1 -6241 302 43 446 275 41 23 chr3 85085434 85085605 -142438973 - MLT1H LTR MaLR -375 174 1 567 162 171 9 chr3 85086263 85086374 -142438204 + FLAM_A SINE Alu 1 129 -4 2387 63 7 0 chr3 85086517 85086801 -142437777 - AluY SINE Alu -25 286 1 430 279 14 20 chr3 85086899 85087046 -142437532 - MIR SINE MIR -58 204 59 1978 136 4 0 chr3 85087089 85087368 -142437210 + AluSg SINE Alu 2 281 -29 651 88 0 0 chr3 85087368 85087459 -142437119 + (TAGA)n Simple_repeat Simple_repeat 4 94 0 2500 66 0 0 chr3 85088036 85088339 -142436239 + AluY SINE Alu 1 303 -8 216 0 0 0 chr3 85089745 85089769 -142434809 + (T)n Simple_repeat Simple_repeat 1 24 0 26 30 0 0 chr3 85090044 85090077 -142434501 + AT_rich Low_complexity Low_complexity 1 33 0 2384 136 61 19 chr3 85090675 85091102 -142433476 - MER65A LTR ERV1 0 445 1 244 138 100 75 chr3 85092084 85092164 -142432414 - L1MC4a LINE L1 -1830 5978 5897 2215 91 30 13 chr3 85092391 85092689 -142431889 - AluSq SINE Alu -10 303 1 285 345 30 18 chr3 85092926 85093094 -142431484 - MER5A DNA MER1_type -2 187 18 197 316 20 20 chr3 85093628 85093726 -142430852 + MER5A DNA MER1_type 7 104 -85 651 183 150 7 chr3 85093975 85094128 -142430450 - MER5A DNA MER1_type -6 183 9 191 274 95 0 chr3 85095084 85095168 -142429410 + L2 LINE L2 3200 3291 -22 581 214 87 14 chr3 85095434 85095573 -142429005 + MLT1J LTR MaLR 1 112 -338 671 211 247 22 chr3 85095613 85095836 -142428742 + MLT1J LTR MaLR 239 511 0 252 289 12 36 chr3 85096003 85096086 -142428492 + MIR SINE MIR 80 160 -102 2203 108 10 0 chr3 85096231 85096528 -142428050 - AluSq SINE Alu -13 300 1 2258 72 7 39 chr3 85097202 85097507 -142427071 - AluSc SINE Alu -14 295 1 805 94 120 0 chr3 85098117 85098234 -142426344 - AluSc SINE Alu -178 131 1 2067 142 3 0 chr3 85098239 85098542 -142426036 - AluSx SINE Alu -8 304 1 2086 151 0 3 chr3 85100168 85100472 -142424106 + AluSx SINE Alu 1 303 -9 814 228 6 0 chr3 85100762 85100924 -142423654 - FRAM SINE Alu -13 163 1 1566 165 80 53 chr3 85101012 85101351 -142423227 + MER7A DNA MER2_type 1 346 0 1010 226 11 41 chr3 85101351 85101624 -142422954 - MLT1B LTR MaLR -2 503 124 2312 111 0 13 chr3 85101655 85101970 -142422608 - AluSx SINE Alu -1 311 1 403 278 125 17 chr3 85102002 85102178 -142422400 - MLT1J LTR MaLR -316 195 1 2362 93 0 0 chr3 85102223 85102525 -142422053 - AluY SINE Alu -9 302 1 885 196 0 0 chr3 85102558 85102706 -142421872 - AluJb SINE Alu -28 284 137 2728 63 6 0 chr3 85102998 85103332 -142421246 - LTR12 LTR ERV1 0 714 379 4702 89 181 6 chr3 85103335 85104035 -142420543 - LTR12 LTR ERV1 -3 823 1 5814 90 11 5 chr3 85104038 85104827 -142419751 - HERV9 LTR ERV1 -2 8397 7604 2777 167 118 51 chr3 85104806 85105650 -142418928 - Harlequin LTR ERV1 -5156 1740 840 * 6325 94 3 36 chr3 85105643 85106548 -142418030 - Harlequin LTR ERV1 -3445 4954 4080 15831 104 9 10 chr3 85106555 85109743 -142414835 - Harlequin LTR ERV1 -5260 3139 40 2600 62 169 191 chr3 85109753 85110350 -142414228 - LTR12 LTR ERV1 -130 584 1 21 36 0 0 chr3 85110426 85110454 -142414124 + AT_rich Low_complexity Low_complexity 1 28 0 276 281 111 47 chr3 85111220 85111391 -142413187 + MIR SINE MIR 52 233 -29 239 144 165 62 chr3 85111427 85111524 -142413054 + MER5B DNA MER1_type 3 109 -69 917 127 33 75 chr3 85111810 85112022 -142412556 - L1MB2 LINE L1 -3 6168 5966 313 202 48 67 chr3 85112272 85112376 -142412202 + MIR SINE MIR 70 171 -91 21 0 0 0 chr3 85112465 85112486 -142412092 + AT_rich Low_complexity Low_complexity 1 21 0 698 259 35 66 chr3 85112522 85112808 -142411770 + MER20B DNA MER1_type 33 309 -474 5807 83 6 1 chr3 85112967 85114055 -142410523 - L1PA6 LINE L1 -76 6078 4985 2306 110 3 0 chr3 85114055 85114365 -142410213 - AluSx SINE Alu -1 311 1 406 113 0 0 chr3 85114382 85114444 -142410134 - L1PA16 LINE L1 -7 6159 6098 436 224 20 10 chr3 85114445 85114543 -142410035 - L1PA16 LINE L1 -105 6061 5963 1507 114 26 0 chr3 85114622 85114850 -142409728 - L1PA13 LINE L1 -5 6158 5925 2410 94 0 0 chr3 85114851 85115159 -142409419 - AluY SINE Alu -3 308 1 538 247 67 6 chr3 85115166 85115344 -142409234 + LTR33A LTR ERVL 335 523 0 767 124 0 0 chr3 85116135 85116248 -142408330 - AluSg/x SINE Alu -1 309 197 2104 216 14 49 chr3 85116430 85116886 -142407692 + LTR31 LTR ERV1 113 551 -68 2360 102 0 0 chr3 85116886 85117190 -142407388 + AluSc SINE Alu 1 304 -5 2104 216 14 49 chr3 85117190 85117243 -142407335 + LTR31 LTR ERV1 551 604 -15 415 269 42 0 chr3 85117530 85117649 -142406929 - MER103 DNA DNA -40 126 3 180 111 0 0 chr3 85119015 85119042 -142405536 + (CATA)n Simple_repeat Simple_repeat 1 27 0 228 35 0 0 chr3 85120175 85120204 -142404374 + (TG)n Simple_repeat Simple_repeat 2 30 0 2162 101 0 7 chr3 85121100 85121419 -142403159 - AluSx SINE Alu 0 327 11 910 209 11 6 chr3 85121555 85121732 -142402846 + MER45A DNA AcHobo 1 178 0 284 316 11 0 chr3 85121882 85121977 -142402601 + MER69 DNA AcHobo 1 96 -1130 1088 299 33 42 chr3 85122030 85122509 -142402069 + MER20B DNA MER1_type 33 507 -276 1028 203 71 5 chr3 85122627 85122824 -142401754 + MER58C DNA MER1_type 1 210 -5 259 154 0 19 chr3 85122865 85122917 -142401661 + MER20B DNA MER1_type 596 646 -137 2022 140 0 0 chr3 85122957 85123249 -142401329 - AluSx SINE Alu -7 305 14 502 212 259 65 chr3 85123849 85124174 -142400404 - MLT1G1 LTR MaLR -1 589 185 339 65 0 0 chr3 85124176 85124222 -142400356 + (GA)n Simple_repeat Simple_repeat 1 46 0 675 230 45 83 chr3 85124256 85124502 -142400076 - MLT1G1 LTR MaLR -369 206 6 1964 125 24 7 chr3 85124597 85124877 -142399701 + AluSc SINE Alu 1 288 -21 321 26 0 0 chr3 85124877 85124915 -142399663 + (CCA)n Simple_repeat Simple_repeat 1 38 0 293 290 40 0 chr3 85126430 85126530 -142398048 - MIR3 SINE MIR -49 159 56 227 241 89 38 chr3 85126645 85126724 -142397854 + MIR SINE MIR 39 121 -87 338 212 59 68 chr3 85127833 85127951 -142396627 - MER5A DNA MER1_type -37 152 36 372 228 102 31 chr3 85128170 85128372 -142396206 - MLT1G1 LTR MaLR 0 555 302 656 200 7 0 chr3 85128391 85128536 -142396042 + (TCTA)n Simple_repeat Simple_repeat 1 146 0 760 252 55 19 chr3 85128548 85128858 -142395720 - MLT1G1 LTR MaLR -303 287 1 239 238 25 25 chr3 85130693 85130773 -142393805 + MER116 DNA Mariner 1 80 0 334 325 92 6 chr3 85130952 85131115 -142393463 + MIR SINE MIR 1 177 -85 2795 92 10 51 chr3 85131271 85131662 -142392916 - THE1C LTR MaLR 0 375 1 247 326 56 117 chr3 85131662 85132039 -142392539 + L2 LINE L2 2914 3267 -5 299 255 31 87 chr3 85132232 85132345 -142392233 + MIR SINE MIR 8 111 -151 2329 74 0 39 chr3 85132345 85132657 -142391921 - AluY SINE Alu -11 300 1 299 255 31 87 chr3 85132657 85132704 -142391874 + MIR SINE MIR 111 159 -103 2117 148 12 96 chr3 85132708 85133134 -142391444 + MLT1B LTR MaLR 1 390 0 260 224 119 144 chr3 85133180 85133457 -142391121 - MLT1I LTR MaLR -49 360 91 214 235 29 108 chr3 85133543 85133606 -142390972 + MIR SINE MIR 154 208 -54 2442 88 0 3 chr3 85133606 85133912 -142390666 + AluSc SINE Alu 1 305 -4 214 235 29 108 chr3 85133912 85133950 -142390628 + MIR SINE MIR 208 247 -15 210 118 0 0 chr3 85133950 85133984 -142390594 + (TTG)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr3 85135370 85135392 -142389186 + AT_rich Low_complexity Low_complexity 1 22 0 332 280 280 15 chr3 85135415 85135615 -142388963 - MIR SINE MIR -2 260 8 410 294 34 40 chr3 85135709 85135886 -142388692 - L2 LINE L2 -35 3278 3103 457 278 37 12 chr3 85136471 85136633 -142387945 + MER117 DNA MER1_type 2 167 -30 347 60 20 0 chr3 85136780 85136830 -142387748 + (TCCCC)n Simple_repeat Simple_repeat 2 52 0 531 240 0 13 chr3 85136852 85137077 -142387501 + CT-rich Low_complexity Low_complexity 1 222 0 420 338 13 6 chr3 85137104 85137261 -142387317 + MIR SINE MIR 10 167 -95 807 256 130 10 chr3 85137301 85137700 -142386878 - MER113 DNA MER1_type? -3 518 72 192 309 109 115 chr3 85137824 85137963 -142386615 + L2 LINE L2 2861 2999 -273 2286 124 0 3 chr3 85137963 85138270 -142386308 + AluSx SINE Alu 1 306 -6 192 309 109 115 chr3 85138270 85138496 -142386082 + L2 LINE L2 2999 3224 -48 2352 218 13 73 chr3 85139666 85139773 -142384805 - L1MD3 LINE L1 0 7995 7883 2275 117 0 0 chr3 85139773 85140072 -142384506 - AluSx SINE Alu -13 299 1 2352 218 13 73 chr3 85140072 85140090 -142384488 - L1MD3 LINE L1 -112 7883 7865 1518 157 9 121 chr3 85140090 85140421 -142384157 + AluJo SINE Alu 1 294 -8 2352 218 13 73 chr3 85140421 85140441 -142384137 - L1MD3 LINE L1 -130 7865 7845 1815 146 7 4 chr3 85140441 85140722 -142383856 + AluSx SINE Alu 21 302 -10 2352 218 13 73 chr3 85140722 85141204 -142383374 - L1MD3 LINE L1 -150 7845 7404 875 153 64 6 chr3 85141798 85141955 -142382623 + LTR50 LTR ERVL 1 166 -629 1555 229 248 10 chr3 85141974 85142580 -142381998 + LTR50 LTR ERVL 1 750 -45 2294 90 0 10 chr3 85142588 85142887 -142381691 + AluSc SINE Alu 1 296 -13 2050 128 3 0 chr3 85143326 85143615 -142380963 + AluSg SINE Alu 3 292 -18 240 35 0 0 chr3 85144586 85144615 -142379963 + (CAA)n Simple_repeat Simple_repeat 2 30 0 808 117 8 0 chr3 85145603 85145723 -142378855 + L1P4 LINE L1 5592 5712 -454 224 39 0 0 chr3 85145998 85146024 -142378554 + (T)n Simple_repeat Simple_repeat 1 26 0 350 314 117 15 chr3 85146343 85146617 -142377961 - MLT1L LTR MaLR -8 607 306 240 246 0 0 chr3 85146636 85146705 -142377873 + CT-rich Low_complexity Low_complexity 2 70 0 345 241 0 48 chr3 85146741 85146928 -142377650 + CT-rich Low_complexity Low_complexity 2 179 0 228 67 0 0 chr3 85146971 85147001 -142377577 + (C)n Simple_repeat Simple_repeat 1 30 0 23 0 0 0 chr3 85147001 85147024 -142377554 + GC_rich Low_complexity Low_complexity 1 23 0 208 247 52 32 chr3 85147041 85147195 -142377383 + (TCCCG)n Simple_repeat Simple_repeat 3 159 0 * 332 258 20 40 chr3 85147097 85147248 -142377330 + C-rich Low_complexity Low_complexity 5 152 0 253 169 34 56 chr3 85147429 85147518 -142377060 + G-rich Low_complexity Low_complexity 2 88 0 541 128 40 0 chr3 85147547 85147672 -142376906 + CT-rich Low_complexity Low_complexity 1 130 0 265 194 32 97 chr3 85147730 85147823 -142376755 - LTR67 LTR ERVL -389 168 82 522 222 98 20 chr3 85150210 85150363 -142374215 - MIR SINE MIR -6 256 92 2421 70 0 3 chr3 85150471 85150769 -142373809 - AluY SINE Alu -14 297 1 226 233 0 55 chr3 85150873 85150946 -142373632 - L2 LINE L2 -62 3251 3183 2379 81 0 0 chr3 85151507 85151804 -142372774 - AluY SINE Alu -12 299 3 2124 145 0 0 chr3 85151806 85152109 -142372469 - AluSx SINE Alu -9 303 1 284 118 0 20 chr3 85152152 85152203 -142372375 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 308 159 0 4 chr3 85152361 85152423 -142372155 - Alu SINE Alu -256 47 1 284 118 0 20 chr3 85152451 85152502 -142372076 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 213 196 20 20 chr3 85152555 85152606 -142371972 - MIR SINE MIR -5 257 207 390 241 154 46 chr3 85152626 85152821 -142371757 - MER113 DNA MER1_type? -138 383 168 375 267 108 42 chr3 85153006 85153231 -142371347 + MIR SINE MIR 19 260 -2 258 299 104 28 chr3 85154639 85154783 -142369795 + L2 LINE L2 3159 3313 0 443 210 10 20 chr3 85155139 85155239 -142369339 + MIR SINE MIR 92 190 -72 345 281 16 8 chr3 85156269 85156397 -142368181 + (TA)n Simple_repeat Simple_repeat 2 130 0 2280 109 0 10 chr3 85156436 85156748 -142367830 + AluSc SINE Alu 1 309 0 482 252 84 7 chr3 85157001 85157169 -142367409 + L1MB8 LINE L1 91 498 -6357 2293 190 60 11 chr3 85157332 85157780 -142366798 - MLT2B1 LTR ERVL -50 470 1 2303 226 61 93 chr3 85157916 85158923 -142365655 + L1MB8 LINE L1 945 1918 -4937 4133 81 15 42 chr3 85158935 85159124 -142365454 - L1MA1 LINE L1 0 6302 6110 1551 224 3 0 chr3 85159124 85159423 -142365155 - AluJb SINE Alu -12 300 1 4133 81 15 42 chr3 85159423 85159835 -142364743 - L1MA1 LINE L1 -192 6110 5717 5841 159 8 23 chr3 85159835 85160413 -142364165 - L1 LINE L1 -1608 4538 3953 2427 72 0 13 chr3 85160413 85160719 -142363859 - AluY SINE Alu -9 302 1 5841 159 8 23 chr3 85160719 85160992 -142363586 - L1 LINE L1 -2193 3953 3677 2098 68 17 41 chr3 85160992 85161320 -142363258 - AluSx SINE Alu 0 321 1 5841 159 8 23 chr3 85161320 85161532 -142363046 - L1 LINE L1 -2469 3677 3486 829 111 0 9 chr3 85161532 85161640 -142362938 - U6 snRNA snRNA 0 107 1 5841 159 8 23 chr3 85161640 85161652 -142362926 - L1 LINE L1 -2660 3486 3475 1398 275 104 45 chr3 85161676 85162572 -142362006 + L1MB8 LINE L1 2104 3052 -4086 2910 201 81 23 chr3 85162586 85162899 -142361679 + L1MB8 LINE L1 5890 6183 -806 2238 77 0 11 chr3 85162899 85163225 -142361353 + AluY SINE Alu 1 323 0 2910 201 81 23 chr3 85163225 85163841 -142360737 + L1MB8 LINE L1 6183 6874 -115 23 54 0 0 chr3 85163870 85163907 -142360671 + AT_rich Low_complexity Low_complexity 1 37 0 327 298 107 52 chr3 85164990 85165242 -142359336 + L2 LINE L2 2632 2897 -417 270 0 0 0 chr3 85165285 85165315 -142359263 + (CA)n Simple_repeat Simple_repeat 2 31 0 613 261 20 39 chr3 85165447 85165650 -142358928 + MLT1J LTR MaLR 5 203 -308 361 296 37 37 chr3 85165736 85165898 -142358680 + MLT1J LTR MaLR 258 419 -92 1116 140 0 0 chr3 85165921 85166092 -142358486 - FRAM SINE Alu -6 170 1 249 326 56 0 chr3 85166211 85166300 -142358278 + L2 LINE L2 3218 3311 -2 1087 208 0 31 chr3 85166442 85166668 -142357910 - MER20 DNA MER1_type 0 219 1 438 20 0 0 chr3 85167542 85167593 -142356985 + (TG)n Simple_repeat Simple_repeat 1 51 0 2379 96 0 3 chr3 85168407 85168720 -142355858 + AluSx SINE Alu 1 312 0 243 267 53 40 chr3 85168894 85168969 -142355609 - MER91A DNA MER1_type -1 195 120 970 235 81 13 chr3 85169139 85169373 -142355205 - MIR SINE MIR -10 252 3 525 282 168 0 chr3 85169472 85169692 -142354886 - MIR SINE MIR -2 260 4 388 321 81 8 chr3 85170055 85170301 -142354277 - L1ME4a LINE L1 -274 5847 5584 2085 246 68 87 chr3 85170583 85170789 -142353789 - L1ME LINE L1 -4512 1568 1360 288 77 0 0 chr3 85170789 85170828 -142353750 + (TG)n Simple_repeat Simple_repeat 2 40 0 2085 246 68 87 chr3 85170828 85171335 -142353243 - L1ME LINE L1 -4720 1360 845 1792 142 69 7 chr3 85171335 85171624 -142352954 - AluSx SINE Alu -5 307 1 2085 246 68 87 chr3 85171624 85171692 -142352886 - L1ME LINE L1 -5235 845 777 1708 176 17 0 chr3 85171692 85171987 -142352591 - AluJo SINE Alu -10 302 3 2085 246 68 87 chr3 85171987 85172302 -142352276 - L1ME LINE L1 -5303 777 508 2299 96 10 0 chr3 85172302 85172603 -142351975 + AluSg SINE Alu 1 304 -6 2085 246 68 87 chr3 85172603 85172917 -142351661 - L1ME LINE L1 -5572 508 190 1030 145 6 13 chr3 85172919 85173078 -142351500 - AluJo SINE Alu -68 244 87 603 242 16 33 chr3 85173078 85173260 -142351318 - L1ME LINE L1 -5889 181 3 239 254 95 0 chr3 85173426 85173489 -142351089 + L2 LINE L2 3241 3309 -4 387 301 22 15 chr3 85175200 85175336 -142349242 + MER5B DNA MER1_type 18 154 -24 363 192 48 67 chr3 85175682 85175786 -142348792 + MIR SINE MIR 70 171 -91 1936 129 33 36 chr3 85175962 85176264 -142348314 + AluSx SINE Alu 1 301 -11 1084 173 22 0 chr3 85176470 85176655 -142347923 - MER5A DNA MER1_type 0 189 1 696 238 17 33 chr3 85176697 85176878 -142347700 + MER5B DNA MER1_type 1 178 0 533 252 125 102 chr3 85176895 85177555 -142347023 + L2 LINE L2 2636 3313 0 1521 166 16 80 chr3 85178463 85178776 -142345802 + AluJb SINE Alu 5 297 -15 402 202 71 20 chr3 85179383 85179482 -142345096 - Charlie5 DNA MER1_type -2507 105 2 267 310 0 0 chr3 85180498 85180569 -142344009 + Charlie8 DNA MER1_type 1354 1424 -993 2108 116 3 0 chr3 85181362 85181654 -142342924 + AluSq SINE Alu 16 308 -5 2011 141 3 10 chr3 85182090 85182402 -142342176 - AluSx SINE Alu -2 310 1 321 225 36 101 chr3 85182581 85182719 -142341859 - MIR SINE MIR -10 252 124 567 231 17 0 chr3 85183653 85183770 -142340808 - MER94 DNA DNA -15 119 1 277 277 24 12 chr3 85183775 85183858 -142340720 + MIR SINE MIR 15 98 -164 899 106 25 31 chr3 85183863 85184023 -142340555 - L1MA4 LINE L1 -3 6297 6139 11620 153 18 3 chr3 85184028 85186860 -142337718 + L1PA14 LINE L1 3274 6156 -5 4778 147 18 28 chr3 85186879 85187188 -142337390 - L1MA4 LINE L1 -163 6137 5827 1332 181 109 8 chr3 85187188 85187453 -142337125 - AluJb SINE Alu -20 292 1 4778 147 18 28 chr3 85187453 85188299 -142336279 - L1MA4 LINE L1 -473 5827 4921 1885 123 63 0 chr3 85188299 85188584 -142335994 - AluSx SINE Alu -9 303 1 4778 147 18 28 chr3 85188584 85188640 -142335938 - L1MA4 LINE L1 -1379 4921 4866 417 242 0 0 chr3 85188649 85188748 -142335830 + MIR SINE MIR 109 207 -55 2783 132 281 32 chr3 85188749 85190031 -142334547 + pTR5 LTR ERV1 743 2606 0 350 145 0 32 chr3 85190045 85190107 -142334471 + MER3 DNA MER1_type 145 204 -5 481 358 53 4 chr3 85191215 85191441 -142333137 - MIR SINE MIR -19 243 7 2442 67 0 16 chr3 85191480 85191795 -142332783 - AluY SINE Alu 0 311 2 200 239 0 0 chr3 85191803 85191849 -142332729 - MIR SINE MIR -23 239 194 2351 82 0 16 chr3 85192087 85192403 -142332175 - AluY SINE Alu 0 311 1 408 263 24 123 chr3 85192411 85192662 -142331916 - MIR SINE MIR -23 239 14 2056 109 21 0 chr3 85192892 85193177 -142331401 - AluSx SINE Alu -21 291 1 382 277 34 0 chr3 85193337 85193456 -142331122 - MER5C DNA MER1_type -200 124 2 236 313 107 0 chr3 85193547 85193659 -142330919 + MIR3 SINE MIR 81 204 -4 355 198 215 25 chr3 85194155 85194276 -142330302 + MER5A DNA MER1_type 12 155 -34 252 313 20 20 chr3 85194492 85194591 -142329987 - L2 LINE L2 -169 3103 3005 1004 252 0 13 chr3 85194724 85194950 -142329628 + MER58A DNA MER1_type 1 223 -1 878 217 16 0 chr3 85194960 85195144 -142329434 + MER5A DNA MER1_type 2 188 -1 288 294 107 32 chr3 85195160 85195347 -142329231 + L2 LINE L2 2920 3120 -193 2578 151 36 40 chr3 85195379 85195732 -142328846 - L1MA7 LINE L1 -5 6286 5934 1614 137 122 32 chr3 85195732 85196076 -142328502 - THE1C LTR MaLR 0 375 1 2578 151 36 40 chr3 85196076 85196251 -142328327 - L1MA7 LINE L1 -357 5934 5760 371 203 0 0 chr3 85196251 85196325 -142328253 + MIR SINE MIR 123 196 -66 1222 103 29 0 chr3 85196479 85196653 -142327925 - L1PB3 LINE L1 -6 6148 5970 370 260 185 6 chr3 85196810 85196983 -142327595 - MIR SINE MIR -42 220 17 640 271 7 0 chr3 85198331 85198486 -142326092 + MER117 DNA MER1_type 6 161 -36 1175 223 5 5 chr3 85198708 85198932 -142325646 - MER58A DNA MER1_type 0 224 1 182 319 53 0 chr3 85199669 85199763 -142324815 - MIR SINE MIR 0 262 164 416 268 9 108 chr3 85200022 85200092 -142324486 + MER102a DNA MER1_type 138 213 -1204 638 226 108 59 chr3 85200092 85200296 -142324282 - MER58C DNA MER1_type -1 214 1 416 268 9 108 chr3 85200296 85200438 -142324140 + MER102a DNA MER1_type 213 329 -1 272 279 35 0 chr3 85200633 85200719 -142323859 + MIR SINE MIR 57 145 -117 314 221 35 23 chr3 85201538 85201624 -142322954 - L1ME4a LINE L1 -43 6078 5992 2444 83 0 6 chr3 85201787 85202100 -142322478 + AluY SINE Alu 1 311 0 333 230 263 7 chr3 85202513 85202665 -142321913 + L2 LINE L2 3118 3308 -5 2289 121 0 0 chr3 85202896 85203202 -142321376 - AluSx SINE Alu -5 307 2 940 186 8 103 chr3 85203663 85203740 -142320838 - MER58A DNA MER1_type -2201 219 136 997 164 116 5 chr3 85203740 85203929 -142320649 + MER6B DNA MER2_type 1 210 0 940 186 8 103 chr3 85203929 85204020 -142320558 - MER58A DNA MER1_type -2284 136 78 1953 146 3 17 chr3 85204020 85204315 -142320263 - AluSx SINE Alu -21 291 1 940 186 8 103 chr3 85204315 85204387 -142320191 - MER58A DNA MER1_type -2342 78 1 322 342 9 9 chr3 85204387 85204501 -142320077 + MIR SINE MIR 2 115 -147 564 314 50 65 chr3 85205735 85206193 -142318385 - MLT1K LTR MaLR -10 578 128 220 350 51 29 chr3 85207448 85207585 -142316993 + MIR3 SINE MIR 1 140 -68 801 323 49 49 chr3 85210167 85210597 -142313981 - L2 LINE L2 -2 3311 2882 903 240 37 20 chr3 85210629 85210875 -142313703 + MIR SINE MIR 8 257 -5 403 159 45 45 chr3 85211311 85211399 -142313179 - L1MB3 LINE L1 -8 6175 6088 388 290 49 12 chr3 85211450 85211612 -142312966 - L1MC4a LINE L1 -1928 5880 5713 445 295 90 0 chr3 85213367 85213533 -142311045 - MIR SINE MIR 0 262 82 1381 191 64 30 chr3 85213565 85213675 -142310903 + MER58B DNA MER1_type 1 106 -2314 2342 77 0 10 chr3 85213675 85213995 -142310583 + AluY SINE Alu 1 311 0 1381 191 64 30 chr3 85213995 85214213 -142310365 + MER58B DNA MER1_type 106 340 -1 379 288 122 7 chr3 85214252 85214391 -142310187 - MIR SINE MIR 0 262 108 300 250 118 22 chr3 85214422 85214559 -142310019 - MIR SINE MIR -59 149 23 1786 107 119 8 chr3 85214574 85214835 -142309743 - AluSg1 SINE Alu -19 290 1 961 250 9 5 chr3 85215999 85216219 -142308359 + MER58A DNA MER1_type 4 224 0 232 276 35 0 chr3 85216247 85216334 -142308244 + GA-rich Low_complexity Low_complexity 3 92 0 568 196 72 7 chr3 85216732 85216870 -142307708 + MER103 DNA DNA 11 157 -9 2393 78 0 0 chr3 85217636 85217931 -142306647 - AluY SINE Alu -16 295 1 1435 99 5 0 chr3 85218154 85218355 -142306223 - L1PB1 LINE L1 -5 6146 5945 578 301 104 56 chr3 85218359 85218534 -142306044 + L2 LINE L2 2458 2623 -690 1081 166 217 103 chr3 85218534 85218701 -142305877 + MLT1B LTR MaLR 1 148 -242 2135 122 3 28 chr3 85218701 85218838 -142305740 + AluSx SINE Alu 1 140 -172 2200 114 13 3 chr3 85218838 85219145 -142305433 + AluSg SINE Alu 1 310 0 2135 122 3 28 chr3 85219145 85219327 -142305251 + AluSx SINE Alu 140 312 0 1081 166 217 103 chr3 85219327 85219509 -142305069 + MLT1B LTR MaLR 148 390 0 578 301 104 56 chr3 85219509 85220144 -142304434 + L2 LINE L2 2623 3304 -9 771 298 105 73 chr3 85220292 85220570 -142304008 + HAL1 LINE L1 22 290 -2217 2536 57 0 0 chr3 85220570 85220867 -142303711 - AluY SINE Alu -14 297 1 771 298 105 73 chr3 85220867 85221312 -142303266 + HAL1 LINE L1 290 768 -1739 1295 179 9 0 chr3 85221397 85221615 -142302963 + MER7A DNA MER2_type 1 218 -128 2151 79 20 16 chr3 85221722 85222025 -142302553 + AluSc SINE Alu 1 304 -5 260 288 38 0 chr3 85222030 85222110 -142302468 + MER96B DNA MER1_type? 334 416 -1 619 213 178 10 chr3 85222162 85222364 -142302214 - MIR SINE MIR -15 247 12 257 284 42 21 chr3 85223139 85223234 -142301344 + MER5A DNA MER1_type 77 184 -5 280 273 45 18 chr3 85223279 85223389 -142301189 - MIR SINE MIR -148 114 2 356 280 131 39 chr3 85223510 85223792 -142300786 - LTR16C LTR ERVL -9 482 175 354 98 0 0 chr3 85223806 85223857 -142300721 + (CA)n Simple_repeat Simple_repeat 1 51 0 1090 310 117 26 chr3 85224531 85225562 -142299016 + L2 LINE L2 1138 2262 -1052 22 0 0 0 chr3 85226827 85226849 -142297729 + AT_rich Low_complexity Low_complexity 1 22 0 2316 112 0 0 chr3 85227107 85227410 -142297168 + AluSq SINE Alu 1 303 -10 2535 139 81 44 chr3 85227829 85228560 -142296018 + L1MB4 LINE L1 5060 5825 -355 11306 53 0 4 chr3 85228562 85229923 -142294655 + L1P LINE L1 1 1355 -4791 1421 167 59 46 chr3 85230105 85230410 -142294168 - AluJb SINE Alu -3 309 1 211 310 110 55 chr3 85231687 85231832 -142292746 - MIR3 SINE MIR -50 158 6 390 322 135 5 chr3 85231925 85232133 -142292445 - MIR SINE MIR -13 249 15 6912 173 36 19 chr3 85232523 85234337 -142290241 - L1PA16 LINE L1 -9 6157 4294 2224 124 0 13 chr3 85234337 85234652 -142289926 + AluSx SINE Alu 1 311 -1 6912 173 36 19 chr3 85234652 85235207 -142289371 - L1PA16 LINE L1 -1872 4294 3750 329 326 54 15 chr3 85235210 85235448 -142289130 - L1MC4a LINE L1 -264 5857 5619 468 349 76 71 chr3 85235559 85235952 -142288626 + L2 LINE L2 2873 3267 -5 185 246 15 0 chr3 85236005 85236070 -142288508 + GA-rich Low_complexity Low_complexity 4 69 0 216 294 0 0 chr3 85236109 85236160 -142288418 + GA-rich Low_complexity Low_complexity 1 51 0 2302 64 0 51 chr3 85236208 85236520 -142288058 + AluY SINE Alu 1 296 -15 195 226 0 0 chr3 85236520 85236563 -142288015 + GA-rich Low_complexity Low_complexity 8 53 0 465 271 0 57 chr3 85236675 85236815 -142287763 - L2 LINE L2 -11 3302 3171 396 94 0 0 chr3 85236894 85236947 -142287631 + MADE1 DNA Mariner 28 80 0 295 264 188 7 chr3 85236975 85237119 -142287459 - L2 LINE L2 -248 3065 2896 2152 88 10 23 chr3 85237182 85237488 -142287090 + AluSx SINE Alu 3 304 -8 1819 190 55 55 chr3 85237544 85238001 -142286577 - MLT1C LTR MaLR -8 459 3 31738 32 3 1 chr3 85239529 85244084 -142280494 + L1PA4 LINE L1 1593 6152 -3 1025 162 51 120 chr3 85244083 85244441 -142280137 + L1MB4 LINE L1 5835 6167 -13 * 235 299 159 19 chr3 85245434 85245541 -142279037 - L2 LINE L2 -14 3258 3137 672 235 22 22 chr3 85245640 85245823 -142278755 + MER5A DNA MER1_type 6 188 -1 304 286 107 45 chr3 85245929 85246107 -142278471 - L2 LINE L2 -206 3107 2919 2049 148 0 0 chr3 85246900 85247190 -142277388 + AluSx SINE Alu 1 290 -22 1492 219 68 32 chr3 85247213 85247582 -142276996 - MER58D DNA MER1_type -4 382 1 317 146 0 0 chr3 85247592 85247640 -142276938 - MLT2D LTR ERVL 0 414 367 217 182 15 30 chr3 85247652 85247718 -142276860 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 270 269 68 68 chr3 85247738 85248030 -142276548 - MLT2D LTR ERVL -55 465 170 2202 80 7 28 chr3 85248057 85248380 -142276198 + AluSp SINE Alu 1 317 0 2272 103 0 3 chr3 85248380 85248680 -142275898 + AluSc SINE Alu 1 299 -10 2296 184 32 11 chr3 85248888 85249328 -142275250 + MLT1C LTR MaLR 1 449 -18 233 224 80 80 chr3 85249696 85249821 -142274757 - MIR3 SINE MIR -79 129 5 297 286 48 24 chr3 85250623 85250707 -142273871 - L2 LINE L2 -1 3271 3186 254 123 46 62 chr3 85250723 85250788 -142273790 - LTR50 LTR ERVL -3 792 729 191 298 0 0 chr3 85251918 85251965 -142272613 - MIR SINE MIR -7 255 209 27 0 0 0 chr3 85252003 85252030 -142272548 + AT_rich Low_complexity Low_complexity 1 27 0 466 293 66 66 chr3 85252126 85252168 -142272410 - L1MC4a LINE L1 -1834 5974 5933 1993 132 3 23 chr3 85252168 85252478 -142272100 - AluSc SINE Alu -5 304 1 466 293 66 66 chr3 85252478 85252800 -142271778 - L1MC4a LINE L1 -1874 5934 5610 273 222 0 0 chr3 85252807 85252870 -142271708 + CT-rich Low_complexity Low_complexity 1 63 0 1943 116 14 0 chr3 85252882 85253157 -142271421 - AluSq SINE Alu -34 279 1 496 239 188 17 chr3 85253825 85254001 -142270577 - MIR SINE MIR -55 207 2 2548 161 56 11 chr3 85255491 85255938 -142268640 - MLT1C LTR MaLR 0 467 1 430 259 146 72 chr3 85256416 85256490 -142268088 - L1ME4a LINE L1 -48 6073 6006 2378 92 7 0 chr3 85256490 85256796 -142267782 + AluSq SINE Alu 1 308 -5 430 259 146 72 chr3 85256796 85257153 -142267425 - L1ME4a LINE L1 -115 6006 5610 657 270 45 40 chr3 85258519 85258741 -142265837 - MIR SINE MIR -21 241 19 382 309 0 0 chr3 85258945 85259055 -142265523 - MIR SINE MIR -14 248 139 2352 101 3 0 chr3 85259124 85259432 -142265146 + AluSp SINE Alu 1 309 -4 352 296 35 35 chr3 85259434 85259549 -142265029 + L2 LINE L2 3158 3272 0 251 241 0 0 chr3 85259553 85259607 -142264971 - MIR SINE MIR -121 141 88 2012 157 10 57 chr3 85259781 85260170 -142264408 - MLT1B LTR MaLR -16 374 4 1152 216 9 9 chr3 85260707 85260925 -142263653 - MER20 DNA MER1_type -1 218 1 187 245 151 47 chr3 85260925 85261025 -142263553 - MIR SINE MIR -47 215 105 2208 122 0 0 chr3 85261159 85261455 -142263123 - AluSg SINE Alu -14 296 1 421 244 17 35 chr3 85261503 85261618 -142262960 - L2 LINE L2 -1 3312 3200 23 33 0 0 chr3 85262862 85262892 -142261686 + AT_rich Low_complexity Low_complexity 1 30 0 941 253 50 56 chr3 85263053 85263393 -142261185 - MLT1J LTR MaLR -8 503 166 5883 130 19 47 chr3 85263404 85264233 -142260345 - L1PA13 LINE L1 -4 6159 5380 1530 209 0 34 chr3 85264233 85264554 -142260024 - AluSg SINE Alu 0 310 1 5883 130 19 47 chr3 85264554 85264894 -142259684 - L1PA13 LINE L1 -783 5380 5032 1395 149 4 0 chr3 85264994 85265229 -142259349 + L1P LINE L1 4475 4710 -1436 585 242 15 15 chr3 85265236 85265368 -142259210 - MLT1J LTR MaLR -334 177 46 309 26 0 0 chr3 85266263 85266301 -142258277 + (TG)n Simple_repeat Simple_repeat 2 39 0 22 70 0 0 chr3 85267430 85267473 -142257105 + AT_rich Low_complexity Low_complexity 1 43 0 891 231 100 51 chr3 85268498 85268809 -142255769 + MLT1I LTR MaLR 70 395 -14 1016 186 88 15 chr3 85268966 85269240 -142255338 + MER33 DNA MER1_type 1 294 -30 655 199 51 6 chr3 85269358 85269514 -142255064 + Charlie5 DNA MER1_type 2423 2585 -27 241 280 172 0 chr3 85269573 85269666 -142254912 + MIR SINE MIR 84 192 -70 1874 159 49 27 chr3 85270476 85270841 -142253737 + THE1C LTR MaLR 1 373 -2 1504 265 47 19 chr3 85270841 85271263 -142253315 - MLT1J LTR MaLR -71 440 7 239 209 174 12 chr3 85271316 85271402 -142253176 - MIR SINE MIR -69 193 94 284 271 101 80 chr3 85271438 85271626 -142252952 - MIR SINE MIR -47 215 24 590 264 7 0 chr3 85271659 85271803 -142252775 - MLT1E2 LTR MaLR -4 622 478 * 704 146 40 81 chr3 85271801 85271975 -142252603 - MLT1E2 LTR MaLR -345 160 1 377 196 42 26 chr3 85271975 85272136 -142252442 + MER112 DNA MER1_type 22 220 -40 243 336 27 40 chr3 85272159 85272308 -142252270 + L2 LINE L2 2553 2699 -615 411 217 38 38 chr3 85273066 85273172 -142251406 + MIR SINE MIR 2 107 -155 1101 270 95 52 chr3 85273632 85274004 -142250574 + L2 LINE L2 2783 3182 -131 1466 121 5 14 chr3 85274004 85274219 -142250359 - L1PA11 LINE L1 0 6174 5962 1101 270 95 52 chr3 85274219 85274357 -142250221 + L2 LINE L2 3182 3313 0 284 264 57 19 chr3 85274365 85274471 -142250107 - L2 LINE L2 -4 3309 3200 1325 199 70 7 chr3 85275105 85275392 -142249186 + MLT1F LTR MaLR 238 542 0 446 321 21 21 chr3 85275586 85275773 -142248805 - MIR SINE MIR -12 250 64 530 252 155 0 chr3 85275861 85276016 -142248562 - MER5A DNA MER1_type 0 189 11 252 175 83 158 chr3 85279072 85279192 -142245386 - L2 LINE L2 -21 3292 3182 408 193 12 12 chr3 85279197 85279280 -142245298 - Charlie4a DNA MER1_type -4 504 422 1017 174 22 0 chr3 85279286 85279470 -142245108 - L1MA9 LINE L1 -219 6093 5906 * 1040 134 119 15 chr3 85279463 85279636 -142244942 + L1MA9 LINE L1 6085 6283 -29 2509 151 31 21 chr3 85279636 85280054 -142244524 - MSTA LTR MaLR -2 426 5 1040 134 119 15 chr3 85280054 85280081 -142244497 + L1MA9 LINE L1 6283 6306 -6 1080 241 140 3 chr3 85280084 85280449 -142244129 - Charlie4a DNA MER1_type -84 424 10 290 250 38 0 chr3 85281102 85281182 -142243396 + MER91A DNA MER1_type 1 83 -113 261 218 35 11 chr3 85281484 85281571 -142243007 + MER113 DNA MER1_type? 4 92 -429 966 267 31 0 chr3 85281687 85281975 -142242603 + L1MC1 LINE L1 5013 5309 -837 3597 125 30 3 chr3 85281996 85282764 -142241814 + L1MC1 LINE L1 5470 6333 0 3106 107 0 46 chr3 85282765 85283128 -142241450 - L1PB1 LINE L1 -4 6147 5812 378 0 0 0 chr3 85283128 85283170 -142241408 + (CA)n Simple_repeat Simple_repeat 2 43 0 3106 107 0 46 chr3 85283170 85283302 -142241276 - L1PB1 LINE L1 -339 5812 5675 1007 263 17 11 chr3 85283338 85283659 -142240919 + L1MC4a LINE L1 6194 7808 0 516 270 67 49 chr3 85283858 85284125 -142240453 + MER113 DNA MER1_type? 186 457 -64 42025 65 4 3 chr3 85284332 85290469 -142234109 - L1PA5 LINE L1 -3 6151 11 904 139 17 101 chr3 85290785 85291022 -142233556 - MER20 DNA MER1_type -2 217 1 349 302 43 0 chr3 85291452 85291591 -142232987 - MIR SINE MIR -35 227 83 778 246 109 52 chr3 85291710 85291991 -142232587 - MLT1C LTR MaLR -34 433 169 2134 117 0 0 chr3 85291991 85292272 -142232306 - AluSg SINE Alu -29 281 1 778 246 109 52 chr3 85292272 85292353 -142232225 - MLT1C LTR MaLR -298 169 94 2300 81 10 13 chr3 85292353 85292663 -142231915 - AluSc SINE Alu 0 309 1 778 246 109 52 chr3 85292663 85292759 -142231819 - MLT1C LTR MaLR -373 94 1 216 267 27 13 chr3 85293581 85293656 -142230922 + MIR SINE MIR 79 154 -108 22 0 0 0 chr3 85293960 85293982 -142230596 + AT_rich Low_complexity Low_complexity 1 22 0 1927 260 57 41 chr3 85294032 85294087 -142230491 - HAL1 LINE L1 -105 2402 2349 2418 81 0 0 chr3 85294087 85294385 -142230193 - AluY SINE Alu -13 298 1 1927 260 57 41 chr3 85294385 85295086 -142229492 - HAL1 LINE L1 -158 2349 1634 290 91 0 0 chr3 85295092 85295136 -142229442 - AluSc SINE Alu -2 297 254 1544 271 32 45 chr3 85296151 85296683 -142227895 - ERVL LTR ERVL -439 5325 4801 2360 103 39 28 chr3 85297992 85298352 -142226226 - THE1B LTR MaLR 0 364 1 876 213 42 51 chr3 85298472 85298688 -142225890 - MER58A DNA MER1_type -10 214 1 1680 109 127 11 chr3 85298743 85299010 -142225568 + AluSg1 SINE Alu 1 298 -11 250 241 60 90 chr3 85299960 85300126 -142224452 - MIR SINE MIR -12 250 90 3463 18 0 5 chr3 85304272 85304669 -142219909 + L1PA2 LINE L1 5760 6154 -1 1116 170 163 0 chr3 85305624 85305901 -142218677 + MER33 DNA MER1_type 1 322 -2 258 346 102 57 chr3 85307236 85307519 -142217059 - L2 LINE L2 -107 3165 2870 354 234 0 0 chr3 85307617 85307694 -142216884 - MIR SINE MIR -4 258 182 978 251 79 9 chr3 85308856 85309171 -142215407 + MER113 DNA MER1_type? 9 345 -176 373 281 106 0 chr3 85310276 85310436 -142214142 + MIR SINE MIR 74 250 -12 2578 56 0 10 chr3 85310570 85310874 -142213704 + AluY SINE Alu 1 301 -10 293 277 48 0 chr3 85314298 85314381 -142210197 + MER103 DNA DNA 4 90 -76 1032 230 60 52 chr3 85314801 85315170 -142209408 + MER113 DNA MER1_type? 1 372 -149 200 253 175 90 chr3 85315249 85315415 -142209163 + MER5A DNA MER1_type 10 189 0 1272 125 0 0 chr3 85316618 85316794 -142207784 + AluSg/x SINE Alu 137 312 0 535 288 44 14 chr3 85317505 85317582 -142206996 + L2 LINE L2 3019 3092 -221 1974 140 27 0 chr3 85317582 85317875 -142206703 - AluSx SINE Alu -11 301 1 535 288 44 14 chr3 85317875 85318025 -142206553 + L2 LINE L2 3092 3313 0 194 281 88 0 chr3 85318779 85318836 -142205742 - L2 LINE L2 -2 3311 3250 268 264 14 0 chr3 85320367 85320439 -142204139 - MER5C DNA MER1_type -200 124 52 240 35 0 0 chr3 85320446 85320475 -142204103 + (TAG)n Simple_repeat Simple_repeat 2 30 0 317 368 51 0 chr3 85321385 85321619 -142202959 + L2 LINE L2 2645 2890 -424 180 0 0 0 chr3 85323160 85323180 -142201398 + (CA)n Simple_repeat Simple_repeat 1 20 0 845 183 33 70 chr3 85423688 85423901 -142100677 - AluSg/x SINE Alu -37 273 69 2313 90 3 0 chr3 85424138 85424448 -142100130 - AluY SINE Alu 0 311 1 22 35 0 0 chr3 85425443 85425472 -142099106 + AT_rich Low_complexity Low_complexity 1 29 0 1610 171 0 0 chr3 85425893 85426157 -142098421 - AluSg SINE Alu -45 265 2 1196 202 14 0 chr3 85426222 85426445 -142098133 + AluSx SINE Alu 1 226 -86 2530 58 3 0 chr3 85427038 85427348 -142097230 + AluY SINE Alu 1 311 0 845 183 33 70 chr3 85427585 85427798 -142096780 + AluSg/x SINE Alu 69 273 -37 634 267 17 0 chr3 85428145 85428321 -142096257 + L1MB7 LINE L1 5985 6163 -21 847 296 98 22 chr3 85428354 85428813 -142095765 - L2 LINE L2 -658 2656 2163 1098 246 52 7 chr3 85428863 85429152 -142095426 + AluJo SINE Alu 1 302 0 36 0 0 0 chr3 85429164 85429200 -142095378 + AT_rich Low_complexity Low_complexity 1 36 0 272 105 105 0 chr3 85431604 85431756 -142092822 + (TA)n Simple_repeat Simple_repeat 2 169 0 386 137 46 30 chr3 85431760 85431891 -142092687 + (TTATA)n Simple_repeat Simple_repeat 1 133 0 331 98 104 0 chr3 85431896 85432059 -142092519 + (TA)n Simple_repeat Simple_repeat 1 180 0 207 130 70 9 chr3 85432071 85432186 -142092392 + (TA)n Simple_repeat Simple_repeat 1 122 0 27 0 0 0 chr3 85432712 85432739 -142091839 + AT_rich Low_complexity Low_complexity 1 27 0 180 276 17 52 chr3 85433522 85433580 -142090998 - MIR SINE MIR -64 144 89 1210 244 21 37 chr3 85434175 85434610 -142089968 + L1MA4 LINE L1 5862 6289 -11 1296 295 82 82 chr3 85434894 85436021 -142088557 + MER21-int LTR ERV1 2054 3180 -1011 26 30 0 0 chr3 85436361 85436394 -142088184 + AT_rich Low_complexity Low_complexity 1 33 0 1247 217 41 8 chr3 85436653 85436920 -142087658 + AluSp SINE Alu 1 276 -37 988 207 103 16 chr3 85437414 85437656 -142086922 + AluJb SINE Alu 3 265 -47 270 0 0 0 chr3 85437668 85437698 -142086880 + (TAAA)n Simple_repeat Simple_repeat 3 32 0 363 274 88 22 chr3 85437791 85438065 -142086513 + L1M4 LINE L1 4668 4959 -1187 1025 253 0 8 chr3 85438256 85438513 -142086065 + AluSx SINE Alu 36 290 -22 350 251 107 2 chr3 85438530 85438705 -142085873 + L1M4 LINE L1 5188 5381 -765 5284 138 35 9 chr3 85439223 85440520 -142084058 - L1PA8 LINE L1 -7 6165 4826 10290 169 23 48 chr3 85440523 85442064 -142082514 - L1PA8 LINE L1 -1582 4564 3098 1225 247 7 36 chr3 85442064 85442372 -142082206 - AluSx SINE Alu -3 299 1 10290 169 23 48 chr3 85442372 85443117 -142081461 - L1PA8 LINE L1 -3048 3098 2336 21 36 0 0 chr3 85443605 85443633 -142080945 + AT_rich Low_complexity Low_complexity 1 28 0 328 280 93 42 chr3 85444138 85444331 -142080247 + L1M4c LINE L1 2298 2500 -3884 829 126 8 0 chr3 85444477 85444596 -142079982 + AluY SINE Alu 1 120 -191 189 0 0 0 chr3 85444596 85444617 -142079961 + (CA)n Simple_repeat Simple_repeat 2 22 0 1642 171 4 0 chr3 85444629 85444909 -142079669 + AluSc SINE Alu 21 301 0 1599 259 96 9 chr3 85444909 85445851 -142078727 + L1M4 LINE L1 1088 2211 -4173 1886 326 45 18 chr3 85447835 85448501 -142076077 - MER52A LTR ERV1 -149 1606 923 490 362 53 4 chr3 85448468 85448650 -142075928 - MER52A LTR ERV1 -658 1097 925 * 1494 208 11 0 chr3 85448650 85448929 -142075649 + AluSp SINE Alu 2 283 -30 386 68 0 17 chr3 85448932 85448991 -142075587 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 490 362 53 4 chr3 85448991 85449069 -142075509 - MER52A LTR ERV1 -831 924 820 269 221 27 47 chr3 85449079 85449228 -142075350 + (CCCTAA)n Simple_repeat Simple_repeat 3 148 0 349 177 7 27 chr3 85449249 85449396 -142075182 + (CCCTAA)n Simple_repeat Simple_repeat 1 144 0 214 193 12 24 chr3 85449505 85449588 -142074990 + (CCCTAA)n Simple_repeat Simple_repeat 6 87 0 182 192 20 20 chr3 85449676 85449775 -142074803 + (CCCTAA)n Simple_repeat Simple_repeat 4 102 0 198 227 5 38 chr3 85449890 85450075 -142074503 + (CCCTAA)n Simple_repeat Simple_repeat 2 180 0 308 200 32 8 chr3 85450101 85450226 -142074352 + (CCCTAA)n Simple_repeat Simple_repeat 3 130 0 714 285 77 27 chr3 85450615 85451134 -142073444 + L1M4 LINE L1 4091 4635 -1747 22 0 0 0 chr3 85451719 85451741 -142072837 + AT_rich Low_complexity Low_complexity 1 22 0 979 231 97 7 chr3 85452050 85452319 -142072259 + AluJb SINE Alu 19 311 -1 21 36 0 0 chr3 85452648 85452676 -142071902 + AT_rich Low_complexity Low_complexity 1 28 0 2328 174 33 78 chr3 85452708 85453325 -142071253 + MER4B LTR ERV1 1 754 -25 316 323 60 65 chr3 85454466 85454667 -142069911 - L2 LINE L2 -352 2962 2763 239 255 0 0 chr3 85454704 85454755 -142069823 + MER20 DNA MER1_type 96 146 -73 1841 105 101 21 chr3 85454998 85455284 -142069294 + AluY SINE Alu 1 309 -2 425 203 0 0 chr3 85455677 85455756 -142068822 - HERVL LTR ERVL -4866 788 710 2278 284 19 12 chr3 85455757 85456348 -142068230 + MER52A LTR ERV1 1161 1755 0 433 272 208 0 chr3 85456542 85456667 -142067911 - AluSq SINE Alu -26 287 137 1713 192 0 7 chr3 85456977 85457103 -142067475 + AluSq SINE Alu 1 126 -187 225 0 0 0 chr3 85457103 85457128 -142067450 + (CA)n Simple_repeat Simple_repeat 2 26 0 1713 192 0 7 chr3 85457128 85457293 -142067285 + AluSq SINE Alu 126 290 -23 35 24 0 0 chr3 85457435 85457477 -142067101 + AT_rich Low_complexity Low_complexity 1 42 0 1120 249 90 4 chr3 85457624 85457901 -142066677 - AluSx SINE Alu -11 301 1 42250 58 2 1 chr3 85458201 85464350 -142060228 - L1PA3 LINE L1 0 6155 2 661 265 58 24 chr3 85465896 85466320 -142058258 - MLT1C LTR MaLR -7 460 2 1599 196 3 7 chr3 85467705 85468011 -142056567 - AluSx SINE Alu 0 312 8 352 267 13 0 chr3 85468601 85468676 -142055902 + AluS SINE Alu 3 78 -225 328 322 54 50 chr3 85472304 85472602 -142051976 - MER46C DNA MER2_type -39 299 1 1242 168 10 0 chr3 85473513 85473715 -142050863 - AluSg/x SINE Alu -29 280 77 485 267 6 56 chr3 85475189 85475350 -142049228 + FRAM SINE Alu 4 156 -20 975 170 0 0 chr3 85476024 85476189 -142048389 + U1 snRNA snRNA 1 165 0 25 0 0 0 chr3 85476873 85476898 -142047680 + AT_rich Low_complexity Low_complexity 1 25 0 203 146 24 0 chr3 85477336 85477377 -142047201 + CT-rich Low_complexity Low_complexity 4 45 0 417 20 0 0 chr3 85477387 85477437 -142047141 + (TTCC)n Simple_repeat Simple_repeat 3 52 0 5427 158 6 2 chr3 85477537 85478515 -142046063 - L1P3 LINE L1 -2597 3864 2883 4553 176 38 21 chr3 85478504 85479344 -142045234 - L1P3 LINE L1 -5338 1123 270 * 1144 204 0 0 chr3 85479352 85479553 -142045025 - L1P3 LINE L1 -6256 205 5 22 0 0 0 chr3 85479564 85479586 -142044992 + AT_rich Low_complexity Low_complexity 1 22 0 694 245 102 23 chr3 85479607 85480126 -142044452 + L1MC/D LINE L1 5017 5562 -748 915 193 0 100 chr3 85480745 85480984 -142043594 + AluSc SINE Alu 1 215 -94 1240 232 0 48 chr3 85481471 85481599 -142042979 + AluSx SINE Alu 1 134 -168 1325 211 19 19 chr3 85481599 85481911 -142042667 + AluSx SINE Alu 1 312 0 1240 232 0 48 chr3 85481911 85482092 -142042486 + AluSx SINE Alu 134 295 -7 276 286 135 15 chr3 85482415 85482548 -142042030 - MIR SINE MIR -60 202 54 28 0 0 0 chr3 85483507 85483535 -142041043 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 85483742 85483766 -142040812 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr3 85483794 85483823 -142040755 + AT_rich Low_complexity Low_complexity 1 29 0 280 125 0 0 chr3 85486093 85486141 -142038437 + FLAM SINE Alu 83 130 -3 232 335 177 6 chr3 85486748 85486912 -142037666 + L3 LINE CR1 191 382 -1195 1763 176 3 19 chr3 85487414 85487721 -142036857 + AluSg SINE Alu 1 302 -8 1670 192 3 7 chr3 85487841 85488138 -142036440 + AluSq SINE Alu 1 296 -17 1198 279 25 0 chr3 85488301 85488584 -142035994 - AluJb SINE Alu -12 290 1 412 326 96 57 chr3 85488812 85489113 -142035465 - L2 LINE L2 -19 3253 2941 305 215 82 138 chr3 85491175 85491370 -142033208 + L1MC4 LINE L1 7842 8025 -17 593 221 48 28 chr3 85491392 85491414 -142033164 - AluJo SINE Alu -162 150 130 288 53 0 0 chr3 85491414 85491452 -142033126 + (TTA)n Simple_repeat Simple_repeat 2 39 0 593 221 48 28 chr3 85491452 85491574 -142033004 - AluJo SINE Alu -182 130 3 249 139 0 0 chr3 85491733 85491776 -142032802 + (TTCC)n Simple_repeat Simple_repeat 2 44 0 192 77 0 0 chr3 85491855 85491881 -142032697 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 353 272 24 0 chr3 85493405 85493530 -142031048 + FLAM_C SINE Alu 6 133 0 356 331 76 0 chr3 85493538 85493695 -142030883 + FAM SINE Alu 1 169 -6 1727 175 18 7 chr3 85493794 85494079 -142030499 + AluSx SINE Alu 3 290 -22 1073 209 14 0 chr3 85494171 85494386 -142030192 + L1MC1 LINE L1 6108 6325 -8 723 196 0 0 chr3 85495246 85495404 -142029174 + GA-rich Low_complexity Low_complexity 4 161 0 842 232 48 0 chr3 85497539 85497746 -142026832 - MER20 DNA MER1_type 0 219 3 207 0 0 0 chr3 85498073 85498096 -142026482 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 10832 71 1 6 chr3 85498518 85500011 -142024567 + L1PA4 LINE L1 14 1498 -4648 9647 52 0 8 chr3 85500030 85502048 -142022530 + L1PA4 LINE L1 4128 6155 0 1236 263 54 23 chr3 85502076 85502517 -142022061 - MLT1D LTR MaLR -23 482 28 226 150 50 0 chr3 85502853 85502893 -142021685 + Alu SINE Alu 2 43 -257 1213 205 31 0 chr3 85502918 85503142 -142021436 + AluSx SINE Alu 16 246 -66 402 222 234 23 chr3 85503164 85503335 -142021243 - MER3 DNA MER1_type 0 209 3 189 107 36 18 chr3 85503743 85503799 -142020779 + (CA)n Simple_repeat Simple_repeat 2 58 0 324 289 78 0 chr3 85504065 85504207 -142020371 - MER58B DNA MER1_type 0 341 189 227 281 0 31 chr3 85504234 85504298 -142020280 - L2 LINE L2 -1 3312 3251 209 307 83 20 chr3 85504330 85504435 -142020143 - MIR SINE MIR -78 130 18 319 54 0 36 chr3 85504595 85504651 -142019927 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 764 190 14 114 chr3 85504693 85504904 -142019674 - AluJb SINE Alu -119 193 4 514 243 20 48 chr3 85505808 85506162 -142018416 - L1 LINE L1 -825 6740 6397 450 359 0 0 chr3 85506162 85506307 -142018271 - FRAM SINE Alu -31 145 1 4189 223 63 46 chr3 85506307 85507839 -142016739 - L1 LINE L1 -1140 6425 4867 1129 271 113 7 chr3 85507899 85508500 -142016078 - L1 LINE L1 -3007 4558 3894 668 287 75 28 chr3 85508537 85508750 -142015828 - L1 LINE L1 -4521 2975 2773 1369 211 3 61 chr3 85508750 85509062 -142015516 - AluSq SINE Alu -19 294 1 668 287 75 28 chr3 85509062 85509601 -142014977 - L1 LINE L1 -4723 2773 1967 542 281 168 0 chr3 85509989 85510174 -142014404 - AluSp SINE Alu -97 216 1 246 375 23 8 chr3 85510664 85510792 -142013786 + L2 LINE L2 2464 2593 -721 268 206 0 65 chr3 85512382 85512474 -142012104 - L1 LINE L1 -964 5182 5097 1536 173 34 20 chr3 85512499 85512851 -142011727 + L1MA7 LINE L1 5596 5952 -339 594 267 7 7 chr3 85512866 85513012 -142011566 + FRAM SINE Alu 1 146 -30 876 202 39 82 chr3 85513027 85513203 -142011375 + L1MA7 LINE L1 5960 6110 -181 1621 198 0 0 chr3 85513203 85513491 -142011087 + AluSq SINE Alu 1 288 -25 876 202 39 82 chr3 85513491 85513666 -142010912 + L1MA7 LINE L1 6110 6291 0 1211 196 105 28 chr3 85514103 85514388 -142010190 - AluSx SINE Alu -1 311 5 200 356 144 11 chr3 85514444 85514722 -142009856 + L2 LINE L2 1735 2049 -1265 222 236 0 0 chr3 85514803 85514858 -142009720 + CT-rich Low_complexity Low_complexity 4 58 0 504 281 118 0 chr3 85514859 85515012 -142009566 - FAM SINE Alu -4 171 1 22 0 0 0 chr3 85515677 85515699 -142008879 + AT_rich Low_complexity Low_complexity 1 22 0 29 104 0 0 chr3 85515921 85516027 -142008551 + AT_rich Low_complexity Low_complexity 1 106 0 1915 157 0 0 chr3 85516635 85516921 -142007657 + AluSx SINE Alu 3 288 -24 444 314 135 38 chr3 85517032 85517506 -142007072 + L1M4 LINE L1 84 603 -5939 451 252 9 9 chr3 85517542 85517657 -142006921 - AluJb SINE Alu -30 282 168 710 256 54 10 chr3 85517658 85517861 -142006717 - AluJb SINE Alu -98 214 3 229 51 51 0 chr3 85518005 85518044 -142006534 + T-rich Low_complexity Low_complexity 5 45 0 1350 282 48 37 chr3 85518072 85519307 -142005271 + L1M4 LINE L1 858 2158 -4488 836 242 131 11 chr3 85519320 85519580 -142004998 + AluJo SINE Alu 10 300 -12 296 291 87 21 chr3 85519641 85520022 -142004556 + L1M4 LINE L1 2290 2695 -3951 738 288 42 47 chr3 85520111 85520514 -142004064 + L1M4 LINE L1 2914 3314 -3330 186 171 0 0 chr3 85520520 85520561 -142004017 + T-rich Low_complexity Low_complexity 1 41 0 1475 198 34 0 chr3 85520584 85520852 -142003726 - AluSx SINE Alu -35 277 1 454 286 97 9 chr3 85520886 85521103 -142003475 + L1M4 LINE L1 3351 3586 -3058 3328 256 30 52 chr3 85521194 85522331 -142002247 + L1M3f LINE L1 1293 2404 -4360 1689 197 0 3 chr3 85522331 85522653 -142001925 + AluSx SINE Alu 14 312 0 3328 256 30 52 chr3 85522653 85522943 -142001635 + L1M3f LINE L1 2404 2699 -4065 261 0 0 0 chr3 85524849 85524878 -141999700 + (A)n Simple_repeat Simple_repeat 1 29 0 245 252 56 9 chr3 85524878 85524985 -141999593 + L1M3f LINE L1 2687 2798 -4767 356 298 42 45 chr3 85525088 85525420 -141999158 + L1M3f LINE L1 3320 3650 -3915 198 0 0 0 chr3 85525705 85525727 -141998851 + (T)n Simple_repeat Simple_repeat 1 22 0 8156 203 29 19 chr3 85525727 85526042 -141998536 - L1P3 LINE L1 -3825 2636 2325 1940 131 10 29 chr3 85526042 85526355 -141998223 - AluY SINE Alu -2 309 3 8156 203 29 19 chr3 85526355 85528645 -141995933 - L1P3 LINE L1 -4136 2325 6 1572 174 75 6 chr3 85529006 85529339 -141995239 + LTR22B LTR ERVK 1 356 -136 465 165 0 12 chr3 85529345 85529430 -141995148 + AluY SINE Alu 210 293 -18 320 235 29 10 chr3 85529517 85529619 -141994959 - L1MB3 LINE L1 -10 6173 6070 237 226 0 0 chr3 85529615 85529677 -141994901 - L1MB3 LINE L1 -612 5559 5498 * 225 219 16 47 chr3 85529708 85529772 -141994806 - MER50 LTR ERV1 -663 71 10 514 269 56 53 chr3 85530559 85530953 -141993625 + L1ME2 LINE L1 5583 5980 -184 252 0 0 0 chr3 85531811 85531839 -141992739 + (A)n Simple_repeat Simple_repeat 1 28 0 24 32 0 0 chr3 85532793 85532824 -141991754 + AT_rich Low_complexity Low_complexity 1 31 0 293 291 153 41 chr3 85533702 85533898 -141990680 - MIR SINE MIR -1 261 44 4503 86 0 0 chr3 85534772 85535357 -141989221 + LTR14C LTR ERVK 3 587 0 416 115 0 0 chr3 85535603 85535664 -141988914 + Alu SINE Alu 235 295 -15 29692 137 13 17 chr3 85535703 85541868 -141982710 + L1PA6 LINE L1 11 6144 -10 24 0 0 0 chr3 85541869 85541893 -141982685 + AT_rich Low_complexity Low_complexity 1 24 0 812 248 33 5 chr3 85542005 85542215 -141982363 + MSTB1 LTR MaLR 1 216 -216 2769 243 91 18 chr3 85542219 85542812 -141981766 - L1MB1 LINE L1 -262 7346 6798 3885 113 12 3 chr3 85542812 85543394 -141981184 - LTR14C LTR ERVK 0 587 1 2769 243 91 18 chr3 85543394 85544446 -141980132 - L1MB1 LINE L1 -810 6798 5567 2073 276 36 30 chr3 85544422 85544764 -141979814 - L1MB1 LINE L1 -2945 4620 4282 * 2207 107 0 3 chr3 85544764 85545062 -141979516 + AluY SINE Alu 1 297 -14 2073 276 36 30 chr3 85545062 85546012 -141978566 - L1MB1 LINE L1 -3283 4282 3320 272 232 61 10 chr3 85546115 85546214 -141978364 - L1MB1 LINE L1 -4767 2798 2695 22 0 0 0 chr3 85547864 85547886 -141976692 + AT_rich Low_complexity Low_complexity 1 22 0 2057 124 27 10 chr3 85548141 85548439 -141976139 - AluY SINE Alu -8 303 1 1040 171 11 6 chr3 85548600 85548987 -141975591 + ALR/Alpha Satellite centromeric 1 384 -5895 207 0 0 0 chr3 85548987 85549010 -141975568 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1040 171 11 6 chr3 85549010 85554834 -141969744 + ALR/Alpha Satellite centromeric 384 6266 -13 972 166 15 5 chr3 85554848 85557615 -141966963 + ALR/Alpha Satellite centromeric 1 2796 0 34416 73 6 86 chr3 85557620 85562071 -141962507 + L1PA4 LINE L1 9 3819 -2336 1657 25 0 0 chr3 85562071 85562267 -141962311 + L1PA2 LINE L1 5958 6155 0 34416 73 6 86 chr3 85562267 85563952 -141960626 + L1PA4 LINE L1 3819 5639 -516 2158 66 0 0 chr3 85563952 85564247 -141960331 + L1PA4 LINE L1 5867 6162 0 934 185 8 6 chr3 85564280 85565631 -141958947 + ALR/Alpha Satellite centromeric 1 1353 0 5778 148 23 33 chr3 85565645 85566723 -141957855 - MER11C LTR ERVK -4 1067 1 6672 102 7 0 chr3 85566723 85567700 -141956878 - HERVK11 LTR ERVK 0 7953 6970 180 190 69 52 chr3 85567700 85567758 -141956820 - L2 LINE L2 -64 3208 3150 7442 100 6 0 chr3 85567758 85568882 -141955696 - HERVK11 LTR ERVK -1246 6707 5525 2798 125 0 0 chr3 85568880 85569303 -141955275 - HERVK11 LTR ERVK -3352 4601 4179 * 1123 167 9 7 chr3 85569303 85579229 -141945349 + ALR/Alpha Satellite centromeric 1 9946 0 1047 156 6 0 chr3 85579240 85580336 -141944242 + ALR/Alpha Satellite centromeric 1 1102 0 980 161 9 6 chr3 85580355 85580522 -141944056 + ALR/Alpha Satellite centromeric 1 166 -1521 1994 145 0 7 chr3 85580522 85580832 -141943746 + AluY SINE Alu 1 308 -3 980 161 9 6 chr3 85580832 85582031 -141942547 + ALR/Alpha Satellite centromeric 166 1679 -8 3964 123 19 0 chr3 85582031 85582607 -141941971 + LTR14C LTR ERVK 1 587 0 5293 134 17 4 chr3 85582607 85583996 -141940582 + HERVK14C LTR ERVK 1 1489 -5928 965 177 4 1 chr3 85583996 85585100 -141939478 + ALR/Alpha Satellite centromeric 1 1108 0 14160 116 9 11 chr3 85585101 85588531 -141936047 + L1P LINE L1 1 3549 -2597 212 109 0 43 chr3 85688566 85688612 -141835966 + (GAAAA)n Simple_repeat Simple_repeat 4 47 0 343 274 75 9 chr3 85688934 85689040 -141835538 + L2 LINE L2 3193 3305 -8 264 220 0 0 chr3 85689469 85689519 -141835059 + LTR67 LTR ERVL 507 556 -1 931 257 26 20 chr3 85689573 85689877 -141834701 - MLT1A1 LTR MaLR -2 363 58 22 0 0 0 chr3 85690614 85690636 -141833942 + AT_rich Low_complexity Low_complexity 1 22 0 4337 202 35 56 chr3 85690972 85692331 -141832247 - L1 LINE L1 -769 5201 3871 35 0 0 0 chr3 85692350 85692385 -141832193 + AT_rich Low_complexity Low_complexity 1 35 0 359 299 24 18 chr3 85692395 85692559 -141832019 - L1 LINE L1 -2474 3496 3332 1802 180 36 59 chr3 85693454 85693932 -141830646 - MLT1C LTR MaLR 0 467 1 236 286 16 71 chr3 85694337 85694463 -141830115 + MIR SINE MIR 22 140 -122 29 0 0 0 chr3 85694770 85694799 -141829779 + AT_rich Low_complexity Low_complexity 1 29 0 624 231 39 57 chr3 85695160 85695461 -141829117 - L1 LINE L1 -4172 1799 1278 347 280 13 95 chr3 85695463 85695767 -141828811 - L1 LINE L1 -4899 992 714 1449 325 20 11 chr3 85696067 85696739 -141827839 - L1 LINE L1 -5386 505 2 452 301 122 9 chr3 85697003 85697216 -141827362 - L1M2 LINE L1 -3108 2926 2690 203 369 0 0 chr3 85697410 85697475 -141827103 + L2 LINE L2 1543 1607 -1707 491 126 11 11 chr3 85698220 85698315 -141826263 + L1PB1 LINE L1 6053 6147 -4 330 367 68 20 chr3 85698707 85699307 -141825271 - HERVL LTR ERVL -1745 3909 3312 592 193 9 9 chr3 85701023 85701137 -141823441 + MER5A DNA MER1_type 1 114 -75 516 217 28 56 chr3 85701215 85701358 -141823220 - MER91C DNA MER1_type 0 140 2 180 314 58 12 chr3 85701368 85701454 -141823124 - L2 LINE L2 -558 2756 2667 1306 197 4 8 chr3 85701539 85701788 -141822790 + AluJb SINE Alu 1 248 -64 219 361 43 19 chr3 85702103 85702311 -141822267 - L2 LINE L2 -1012 2302 2090 26 0 0 0 chr3 85703008 85703034 -141821544 + AT_rich Low_complexity Low_complexity 1 26 0 282 169 17 0 chr3 85703364 85703423 -141821155 + L1P3 LINE L1 5423 5482 -672 1892 255 54 25 chr3 85703430 85704744 -141819834 - L1M2 LINE L1 -4385 1650 379 355 288 75 25 chr3 85704865 85705025 -141819553 - L1M4 LINE L1 -5238 717 550 355 378 7 0 chr3 85705718 85705853 -141818725 + MIR3 SINE MIR 67 202 -6 180 368 88 26 chr3 85705937 85706051 -141818527 + MIR SINE MIR 28 148 -60 907 185 94 71 chr3 85708011 85708351 -141816227 - MER69 DNA AcHobo -232 2294 1947 782 305 58 12 chr3 85708350 85708694 -141815884 - MER69 DNA AcHobo -838 388 29 * 5270 210 18 20 chr3 85709521 85711099 -141813479 + L1 LINE L1 2733 4307 -1839 196 154 51 0 chr3 85711429 85711468 -141813110 + L2 LINE L2 3224 3264 -8 1207 184 46 1 chr3 85711567 85711870 -141812708 + MER58B DNA MER1_type 4 341 0 315 301 96 34 chr3 85712111 85712257 -141812321 + MIR SINE MIR 96 250 -12 363 188 47 0 chr3 85712305 85712369 -141812209 - AluS SINE Alu -236 67 1 1796 149 0 18 chr3 85712669 85712951 -141811627 - AluSx SINE Alu -25 287 11 5861 145 34 9 chr3 85713961 85715665 -141808913 - L1PA13 LINE L1 -20 6143 4397 565 306 31 35 chr3 85716224 85716538 -141808040 - MLT1G1 LTR MaLR -293 276 3 297 235 128 10 chr3 85718431 85718533 -141806045 - MER113 DNA MER1_type? -142 379 266 354 237 124 10 chr3 85719805 85719902 -141804676 + L2 LINE L2 2230 2337 -977 665 131 0 19 chr3 85719902 85720009 -141804569 - AluSq/x SINE Alu -207 105 1 1462 325 114 36 chr3 85720353 85721076 -141803502 + L2 LINE L2 2218 3060 -253 2379 71 0 13 chr3 85721076 85721386 -141803192 - AluY SINE Alu -5 306 1 1462 325 114 36 chr3 85721386 85721661 -141802917 + L2 LINE L2 3060 3312 -1 1502 236 134 64 chr3 85722235 85722348 -141802230 - L1MCb LINE L1 -3948 2616 2512 180 111 0 0 chr3 85722348 85722375 -141802203 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1502 236 134 64 chr3 85722375 85722796 -141801782 - L1MCb LINE L1 -4052 2512 2122 210 118 0 0 chr3 85722796 85722830 -141801748 + (TTA)n Simple_repeat Simple_repeat 1 34 0 1502 236 134 64 chr3 85722830 85723459 -141801119 - L1MCb LINE L1 -4442 2122 1496 2096 230 50 21 chr3 85723460 85724539 -141800039 - L1MCb LINE L1 -4849 1196 569 369 0 0 0 chr3 85725120 85725161 -141799417 + (TG)n Simple_repeat Simple_repeat 2 42 0 339 290 136 20 chr3 85725841 85726096 -141798482 + L1ME LINE L1 5456 5726 -395 469 287 54 35 chr3 85727443 85727701 -141796877 + MER102b DNA MER1_type 79 341 0 1119 171 27 23 chr3 85727941 85728198 -141796380 + L1MA5 LINE L1 6043 6300 0 453 310 15 92 chr3 85729035 85729435 -141795143 + MLT1K LTR MaLR 218 586 -2 186 246 0 0 chr3 85730166 85730227 -141794351 + A-rich Low_complexity Low_complexity 1 61 0 21 0 0 0 chr3 85730521 85730542 -141794036 + AT_rich Low_complexity Low_complexity 1 21 0 1967 141 20 3 chr3 85731761 85732066 -141792512 - AluSq SINE Alu -3 310 1 24 67 0 0 chr3 85733281 85733326 -141791252 + AT_rich Low_complexity Low_complexity 1 45 0 1904 141 0 23 chr3 85734234 85734533 -141790045 + AluSx SINE Alu 3 294 -18 552 269 49 14 chr3 85734747 85735128 -141789450 - MLT1J2 LTR MaLR -8 442 4 2417 58 3 26 chr3 85737311 85737621 -141786957 + AluY SINE Alu 1 303 -8 293 244 22 22 chr3 85737642 85737732 -141786846 - LTR33 LTR ERVL -10 511 422 784 230 44 10 chr3 85737738 85737942 -141786636 - MER58A DNA MER1_type 0 224 14 425 258 86 54 chr3 85738008 85738322 -141786256 - LTR33 LTR ERVL -154 367 44 456 271 30 0 chr3 85739544 85739677 -141784901 + FLAM_A SINE Alu 6 142 0 1903 254 67 14 chr3 85739684 85740540 -141784038 + L1 LINE L1 2488 3388 -2758 510 182 85 30 chr3 85740814 85740979 -141783599 - L1MB2 LINE L1 -2 6169 5996 3527 60 0 13 chr3 85741260 85741727 -141782851 - L1PA3 LINE L1 -9 6146 5686 32 43 0 0 chr3 85742737 85742783 -141781795 + AT_rich Low_complexity Low_complexity 1 46 0 21 71 0 0 chr3 85744206 85744248 -141780330 + AT_rich Low_complexity Low_complexity 1 42 0 270 305 38 9 chr3 85747600 85747705 -141776873 - MIR SINE MIR -50 212 105 2284 208 50 47 chr3 85747905 85748669 -141775909 + L1 LINE L1 4616 5381 -765 6872 139 23 97 chr3 85748669 85750272 -141774306 - Tigger1 DNA MER2_type 0 2418 934 3795 97 1 61 chr3 85750311 85751011 -141773567 - L1PA3 LINE L1 -5 6150 5493 182 36 0 36 chr3 85753066 85753094 -141771484 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 590 374 36 16 chr3 85754274 85754659 -141769919 + L2 LINE L2 637 1029 -2285 679 330 27 17 chr3 85754757 85755084 -141769494 + L2 LINE L2 2474 2873 -440 222 252 32 98 chr3 85755120 85755243 -141769335 + L2 LINE L2 3010 3124 -189 388 105 12 12 chr3 85755349 85755435 -141769143 + (CAAAA)n Simple_repeat Simple_repeat 5 90 0 351 223 8 15 chr3 85755482 85755612 -141768966 + GA-rich Low_complexity Low_complexity 2 130 0 1243 256 138 8 chr3 85756830 85757221 -141767357 + MER45C DNA AcHobo 512 953 0 2245 109 6 6 chr3 85757413 85757726 -141766852 - AluSq SINE Alu 0 313 1 25 0 0 0 chr3 85759547 85759572 -141765006 + AT_rich Low_complexity Low_complexity 1 25 0 2158 150 5 17 chr3 85761169 85761590 -141762988 - L1PA6 LINE L1 -218 5936 5521 350 336 37 37 chr3 85762653 85762825 -141761753 + L1MEc LINE L1 82 256 -6140 396 0 0 0 chr3 85762825 85762869 -141761709 + (TG)n Simple_repeat Simple_repeat 2 45 0 350 336 37 37 chr3 85762869 85762967 -141761611 + L1MEc LINE L1 255 352 -6044 30 0 6 0 chr3 85763362 85763423 -141761155 + AT_rich Low_complexity Low_complexity 1 30 0 1674 159 23 30 chr3 85763807 85764108 -141760470 - AluJb SINE Alu -13 299 1 258 318 85 28 chr3 85766324 85766500 -141758078 + MIR SINE MIR 65 250 -12 307 214 0 0 chr3 85766585 85766653 -141757925 - MLT1A1 LTR MaLR -7 378 298 22 0 0 0 chr3 85766755 85766777 -141757801 + AT_rich Low_complexity Low_complexity 1 22 0 230 0 33 0 chr3 85766983 85767013 -141757565 + (CA)n Simple_repeat Simple_repeat 2 32 0 734 285 9 14 chr3 85767895 85768109 -141756469 + MIR SINE MIR 48 260 -2 1170 56 0 7 chr3 85769073 85769215 -141755363 + AluY SINE Alu 1 141 -170 534 260 167 58 chr3 85769781 85770352 -141754226 - L2 LINE L2 0 3313 2672 269 263 42 68 chr3 85770920 85771038 -141753540 + MLT1K LTR MaLR 133 247 -341 646 230 168 0 chr3 85772320 85772481 -141752097 + MER5A DNA MER1_type 2 189 0 288 0 0 0 chr3 85773430 85773462 -141751116 + (A)n Simple_repeat Simple_repeat 1 32 0 987 266 97 70 chr3 85773747 85774205 -141750373 - MER20B DNA MER1_type -34 749 264 2506 143 68 8 chr3 85774205 85774674 -141749904 - L1MB3 LINE L1 -10 6173 5677 987 266 97 70 chr3 85774674 85774918 -141749660 - MER20B DNA MER1_type -519 264 28 197 283 0 0 chr3 85775752 85775798 -141748780 + MIR SINE MIR 45 90 -118 746 231 55 47 chr3 85775803 85776059 -141748519 - MLT1F1 LTR MaLR -2 565 308 355 295 86 7 chr3 85776092 85776231 -141748347 + MIR SINE MIR 93 242 -20 4601 175 48 12 chr3 85777960 85778990 -141745588 - L1M4c LINE L1 -4068 2578 1517 4020 198 23 50 chr3 85779098 85780452 -141744126 + L1MB3 LINE L1 4848 6175 -8 1017 291 173 12 chr3 85780498 85780927 -141743651 - MLT1E LTR MaLR -77 516 19 234 141 234 0 chr3 85781528 85781592 -141742986 - MADE1 DNA Mariner -1 79 1 55 0 0 0 chr3 85781688 85781743 -141742835 + AT_rich Low_complexity Low_complexity 1 55 0 434 237 30 8 chr3 85782890 85783021 -141741557 + L1MB4 LINE L1 6013 6146 -34 21 36 0 0 chr3 85783643 85783671 -141740907 + AT_rich Low_complexity Low_complexity 1 28 0 289 342 17 2 chr3 85784779 85784904 -141739674 + L2 LINE L2 2843 2964 -308 310 245 174 94 chr3 85786124 85786336 -141738242 + MIR SINE MIR 28 256 -6 616 327 58 30 chr3 85789538 85789899 -141734679 - L2 LINE L2 -32 3281 2911 264 333 32 32 chr3 85790008 85790197 -141734381 - MLT1J LTR MaLR 0 511 323 193 89 44 44 chr3 85790377 85790422 -141734156 + T-rich Low_complexity Low_complexity 1 45 0 2129 132 13 0 chr3 85790436 85790740 -141733838 - AluSx SINE Alu -4 308 1 283 222 26 26 chr3 85791214 85791367 -141733211 + (TA)n Simple_repeat Simple_repeat 1 153 0 22 56 0 0 chr3 85791626 85791662 -141732916 + AT_rich Low_complexity Low_complexity 1 36 0 410 264 50 94 chr3 85792122 85792683 -141731895 + L1MC4 LINE L1 6865 7400 -642 201 262 0 24 chr3 85792768 85792852 -141731726 + A-rich Low_complexity Low_complexity 2 83 0 25 0 0 0 chr3 85793247 85793272 -141731306 + AT_rich Low_complexity Low_complexity 1 25 0 1876 143 14 11 chr3 85794114 85794401 -141730177 + AluSx SINE Alu 1 288 -24 186 118 0 0 chr3 85794404 85794438 -141730140 + (CAAA)n Simple_repeat Simple_repeat 1 34 0 279 282 0 14 chr3 85794439 85794510 -141730068 - L2 LINE L2 0 3272 3203 425 363 58 24 chr3 85794648 85795025 -141729553 + L2 LINE L2 2447 2836 -478 193 333 60 60 chr3 85795120 85795303 -141729275 + L2 LINE L2 2947 3129 -184 396 0 0 0 chr3 85795455 85795499 -141729079 + (TG)n Simple_repeat Simple_repeat 2 45 0 645 314 123 15 chr3 85795686 85796011 -141728567 + LTR33 LTR ERVL 1 360 -161 229 129 0 0 chr3 85796068 85796099 -141728479 + LTR33 LTR ERVL 484 514 -7 410 336 110 32 chr3 85796102 85796566 -141728012 - L2 LINE L2 -668 2646 2147 7376 205 11 15 chr3 85796718 85797543 -141727035 - L1M1 LINE L1 -5866 1699 881 1026 25 17 0 chr3 85797543 85797661 -141726917 - L1PA4 LINE L1 -3 6152 6033 7376 205 11 15 chr3 85797661 85798273 -141726305 - L1M1 LINE L1 -6684 881 268 200 282 8 46 chr3 85798424 85798555 -141726023 + T-rich Low_complexity Low_complexity 1 126 0 22 0 0 0 chr3 85799796 85799818 -141724760 + AT_rich Low_complexity Low_complexity 1 22 0 1335 149 13 53 chr3 85799877 85800105 -141724473 + MER20 DNA MER1_type 1 219 0 2221 109 3 0 chr3 85800602 85800895 -141723683 + AluSg SINE Alu 1 294 -16 655 276 54 8 chr3 85800980 85801219 -141723359 - MIR SINE MIR 0 262 13 922 218 88 31 chr3 85801574 85801835 -141722743 - MLT1D LTR MaLR -48 457 182 241 188 0 0 chr3 85801856 85801904 -141722674 - L1MB4 LINE L1 -1 6179 6132 199 265 265 10 chr3 85802505 85802541 -141722037 - MIR SINE MIR -27 235 209 270 0 0 0 chr3 85802541 85802571 -141722007 + (CA)n Simple_repeat Simple_repeat 2 31 0 199 265 265 10 chr3 85802571 85802636 -141721942 - MIR SINE MIR -53 209 108 285 293 57 19 chr3 85802808 85802914 -141721664 + MIR SINE MIR 46 155 -107 1600 170 6 43 chr3 85803079 85803403 -141721175 - AluJb SINE Alu 0 312 1 705 216 11 45 chr3 85804268 85804444 -141720134 - MER5B DNA MER1_type -8 170 1 819 193 5 52 chr3 85804458 85804650 -141719928 - MER5A DNA MER1_type -6 183 1 29 28 0 0 chr3 85806311 85806347 -141718231 + AT_rich Low_complexity Low_complexity 1 36 0 212 293 0 0 chr3 85807045 85807103 -141717475 + MIR SINE MIR 53 110 -152 3244 156 34 7 chr3 85807803 85808393 -141716185 + L1MB3 LINE L1 5571 6176 -7 714 281 41 44 chr3 85808857 85809195 -141715383 - MLT1I LTR MaLR -14 395 59 254 309 34 60 chr3 85809856 85810005 -141714573 - L2 LINE L2 -4 3309 3165 391 250 31 137 chr3 85810046 85810338 -141714240 - L2 LINE L2 -55 3258 2998 23 33 0 0 chr3 85810590 85810620 -141713958 + AT_rich Low_complexity Low_complexity 1 30 0 321 327 119 22 chr3 85811487 85811713 -141712865 + MIR SINE MIR 12 259 -3 5272 125 4 4 chr3 85812385 85813175 -141711403 - L1PA12 LINE L1 -72 6096 5307 1110 289 71 20 chr3 85813176 85813902 -141710676 + L1MEc LINE L1 1032 1710 -4832 513 275 67 63 chr3 85813912 85814181 -141710397 - MLT1H LTR MaLR -142 407 138 193 230 0 23 chr3 85814223 85814310 -141710268 + (TA)n Simple_repeat Simple_repeat 1 85 0 2853 102 3 5 chr3 85814680 85815064 -141709514 - L1PA13 LINE L1 0 6163 5781 327 25 0 0 chr3 85815393 85815433 -141709145 + (TA)n Simple_repeat Simple_repeat 2 41 0 1230 166 8 17 chr3 85815433 85815668 -141708910 - AluSg/x SINE Alu -12 300 68 891 213 0 0 chr3 85816464 85816638 -141707940 + G-rich Low_complexity Low_complexity 1 174 0 213 361 0 0 chr3 85816652 85816749 -141707829 + G-rich Low_complexity Low_complexity 4 100 0 312 185 33 179 chr3 85818851 85819002 -141705576 - L2 LINE L2 -2 3311 3183 183 139 0 0 chr3 85819964 85820000 -141704578 + (T)n Simple_repeat Simple_repeat 1 36 0 1554 199 3 7 chr3 85820939 85821240 -141703338 - AluSg SINE Alu -10 300 1 1138 61 0 0 chr3 85821468 85821599 -141702979 + AluSq/x SINE Alu 1 131 -182 387 0 0 0 chr3 85821599 85821642 -141702936 + (CA)n Simple_repeat Simple_repeat 2 44 0 29 0 0 0 chr3 85821926 85821955 -141702623 + AT_rich Low_complexity Low_complexity 1 29 0 535 283 169 35 chr3 85822448 85822791 -141701787 + MLT1L LTR MaLR 119 507 -108 936 252 15 49 chr3 85823719 85824280 -141700298 + L1M1 LINE L1 3537 4075 -3490 826 183 25 25 chr3 85824293 85824495 -141700083 + L1M1 LINE L1 4260 4461 -3104 265 182 36 0 chr3 85824497 85824552 -141700026 - LTR67 LTR ERVL -44 513 457 19386 45 1 38 chr3 85824966 85828127 -141696451 + L1PA3 LINE L1 3039 6152 -3 16515 94 7 19 chr3 85828966 85831443 -141693135 - L1P LINE L1 -2531 3615 1170 9173 53 10 29 chr3 85831443 85832544 -141692034 + L1PA6 LINE L1 4237 5293 -861 2448 74 0 0 chr3 85832544 85832840 -141691738 + AluY SINE Alu 1 296 -15 9173 53 10 29 chr3 85832840 85833684 -141690894 + L1PA6 LINE L1 5293 6152 -2 370 246 32 16 chr3 85834074 85834200 -141690378 + MLT1B LTR MaLR 21 148 -242 2254 112 0 10 chr3 85835729 85836041 -141688537 + AluSx SINE Alu 1 309 -3 315 207 49 0 chr3 85836678 85836760 -141687818 + L1MB3 LINE L1 6089 6174 -9 335 279 27 9 chr3 85836893 85837004 -141687574 + MIR SINE MIR 24 136 -126 3112 115 14 7 chr3 85837030 85837473 -141687105 + L1PA14 LINE L1 5710 6155 -6 1464 125 89 43 chr3 85837509 85837813 -141686765 + THE1C LTR MaLR 1 318 -57 2248 117 0 13 chr3 85837813 85838130 -141686448 - AluSp SINE Alu 0 313 1 217 290 90 65 chr3 85838874 85839029 -141685549 - MIR SINE MIR -59 149 8 284 276 263 13 chr3 85839053 85839214 -141685364 - MIR SINE MIR -12 250 46 672 156 220 43 chr3 85839214 85839400 -141685178 - MER20 DNA MER1_type 0 219 1 284 276 263 13 chr3 85839400 85839412 -141685166 - MIR SINE MIR -216 46 38 702 207 48 0 chr3 85840751 85840896 -141683682 - MER5A DNA MER1_type -4 185 34 2039 103 0 22 chr3 85841053 85841365 -141683213 + AluY SINE Alu 1 305 -6 379 308 20 20 chr3 85841625 85841771 -141682807 + L2 LINE L2 2445 2590 -724 798 168 51 108 chr3 85841771 85841837 -141682741 - MER20 DNA MER1_type 0 219 151 191 111 0 0 chr3 85841837 85841864 -141682714 + (TGG)n Simple_repeat Simple_repeat 1 27 0 798 168 51 108 chr3 85841864 85842011 -141682567 - MER20 DNA MER1_type -68 151 18 280 315 147 38 chr3 85842063 85842355 -141682223 + L2 LINE L2 2652 2975 -339 223 261 0 58 chr3 85842470 85842539 -141682039 + L2 LINE L2 3014 3078 -194 624 177 71 21 chr3 85843282 85843423 -141681155 - AluJb SINE Alu -19 293 146 302 302 81 17 chr3 85843703 85843875 -141680703 - L1M4 LINE L1 -768 5378 5196 3666 249 134 31 chr3 85847806 85849139 -141675439 - L1MC4 LINE L1 -1 8041 6571 287 315 22 0 chr3 85849826 85849918 -141674660 + MER117 DNA MER1_type 59 152 -45 279 237 17 0 chr3 85850930 85850989 -141673589 + U7 snRNA snRNA 2 61 -2 414 0 0 0 chr3 85851178 85851224 -141673354 + (TG)n Simple_repeat Simple_repeat 2 47 0 16094 180 42 42 chr3 85852420 85854827 -141669751 - L1M1 LINE L1 -4043 3522 1113 3988 161 40 76 chr3 85854827 85855641 -141668937 - LTR1 LTR ERV1 0 785 1 16094 180 42 42 chr3 85855641 85856750 -141667828 - L1M1 LINE L1 -6451 1114 6 311 290 10 30 chr3 85856816 85856916 -141667662 - HAL1 LINE L1 -1672 835 738 246 287 103 36 chr3 85857286 85857481 -141667097 + L2 LINE L2 3104 3311 -2 24 0 0 0 chr3 85859258 85859282 -141665296 + AT_rich Low_complexity Low_complexity 1 24 0 556 284 61 37 chr3 85860466 85860689 -141663889 - MIR SINE MIR -1 261 34 285 295 16 41 chr3 85861842 85861964 -141662614 - MIR SINE MIR -136 126 8 204 227 23 0 chr3 85862393 85862437 -141662141 + MIR SINE MIR 123 167 -95 503 230 79 14 chr3 85864779 85864918 -141659660 + MIR SINE MIR 2 149 -113 2066 152 0 0 chr3 85866331 85866640 -141657938 - AluSx SINE Alu -3 309 1 1022 83 23 0 chr3 85867447 85867580 -141656998 + AluY SINE Alu 162 297 -14 769 289 80 13 chr3 85867770 85868082 -141656496 + MER113 DNA MER1_type? 2 334 -187 424 266 52 19 chr3 85868095 85868258 -141656320 + L1ME3A LINE L1 6005 6163 -1 3206 76 7 24 chr3 85868268 85868688 -141655890 + L1PA8A LINE L1 5710 6122 -9 677 229 52 96 chr3 85869266 85869515 -141655063 + MER112 DNA MER1_type 11 248 -12 318 216 74 84 chr3 85870808 85870998 -141653580 + AluY SINE Alu 114 301 0 276 410 0 17 chr3 85872602 85872719 -141651859 + C-rich Low_complexity Low_complexity 5 119 0 435 200 45 18 chr3 85874099 85874209 -141650369 - L1MC5 LINE L1 -48 7913 7801 2274 95 3 3 chr3 85875106 85875400 -141649178 - AluSg SINE Alu -16 294 1 572 284 58 13 chr3 85876257 85876482 -141648096 + MIR SINE MIR 28 262 0 1682 171 25 0 chr3 85876600 85876874 -141647704 - AluJo SINE Alu -31 281 1 26 0 0 0 chr3 85876878 85876904 -141647674 + AT_rich Low_complexity Low_complexity 1 26 0 186 294 46 28 chr3 85877953 85878062 -141646516 + L2 LINE L2 2560 2670 -644 211 233 0 0 chr3 85878070 85878113 -141646465 - L2 LINE L2 -6 3307 3265 2118 124 3 13 chr3 85878262 85878577 -141646001 + AluSx SINE Alu 1 312 0 285 109 0 0 chr3 85881203 85881249 -141643329 + (TATATG)n Simple_repeat Simple_repeat 5 50 0 1000 191 0 16 chr3 85881394 85881583 -141642995 - MER58A DNA MER1_type 0 224 39 213 275 159 0 chr3 85883248 85883317 -141641261 - L2 LINE L2 -29 3284 3205 2708 176 31 20 chr3 85884258 85884802 -141639776 - L1MA9 LINE L1 -1 6311 5762 780 312 0 0 chr3 85885056 85885229 -141639349 + G-rich Low_complexity Low_complexity 1 173 0 261 265 0 0 chr3 85885240 85885342 -141639236 + G-rich Low_complexity Low_complexity 1 102 0 330 51 0 0 chr3 85885804 85885843 -141638735 + MADE1 DNA Mariner 1 39 -41 2516 206 77 16 chr3 85886107 85886231 -141638347 - MER1A DNA MER1_type -2173 527 412 267 60 60 0 chr3 85886231 85886281 -141638297 + (TTA)n Simple_repeat Simple_repeat 1 53 0 2516 206 77 16 chr3 85886281 85886651 -141637927 - MER1A DNA MER1_type -2288 412 3 27 0 0 0 chr3 85886837 85886864 -141637714 + GC_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr3 85886896 85886924 -141637654 + GC_rich Low_complexity Low_complexity 1 28 0 198 0 0 0 chr3 85888652 85888674 -141635904 + (CA)n Simple_repeat Simple_repeat 1 22 0 1654 162 19 56 chr3 85889668 85890100 -141634478 + L1PA13 LINE L1 5748 6163 0 195 343 0 41 chr3 85890190 85890263 -141634315 - L2 LINE L2 -3004 310 241 769 298 36 30 chr3 85890510 85890846 -141633732 + MER93a LTR ERV1 63 400 -2 3399 138 21 67 chr3 85993338 85994055 -141530523 - L1MA8 LINE L1 -3 6288 5605 291 204 0 0 chr3 85994346 85994400 -141530178 + MER58B DNA MER1_type 29 82 -259 1257 153 9 31 chr3 85994502 85994725 -141529853 + MER58B DNA MER1_type 124 341 0 572 174 25 5 chr3 85995051 85995246 -141529332 + AluJo SINE Alu 14 309 -3 1034 246 40 27 chr3 85996032 85996329 -141528249 + AluJo SINE Alu 2 302 0 22 70 0 0 chr3 85996897 85996940 -141527638 + AT_rich Low_complexity Low_complexity 1 43 0 908 272 34 20 chr3 85996949 85997243 -141527335 + AluJb SINE Alu 7 304 -8 898 247 32 12 chr3 85997772 85998023 -141526555 + MIR SINE MIR 6 261 -1 236 298 158 12 chr3 85998110 85998281 -141526297 - MIR SINE MIR -6 256 61 217 272 11 109 chr3 85998643 85998735 -141525843 + L2 LINE L2 3231 3313 0 386 315 65 23 chr3 85999053 85999269 -141525309 - MIR SINE MIR -7 255 31 186 184 0 0 chr3 85999306 85999344 -141525234 - L2 LINE L2 -1 3312 3275 * 194 267 0 17 chr3 85999342 85999402 -141525176 + MIR SINE MIR 183 241 -21 582 255 194 23 chr3 85999437 85999838 -141524740 - L2 LINE L2 -41 3272 2803 234 262 36 24 chr3 86000049 86000133 -141524445 + MIR SINE MIR 31 115 -147 216 162 0 0 chr3 86000406 86000443 -141524135 + (CAATT)n Simple_repeat Simple_repeat 3 39 0 1276 204 5 0 chr3 86000571 86000791 -141523787 - MER58A DNA MER1_type -3 221 1 389 268 44 75 chr3 86000826 86001075 -141523503 - MIR SINE MIR -11 251 3 858 292 126 31 chr3 86001498 86001943 -141522635 + L2 LINE L2 2827 3313 0 530 267 53 43 chr3 86001964 86002151 -141522427 - MIR SINE MIR -11 251 63 188 228 18 0 chr3 86003220 86003277 -141521301 + GA-rich Low_complexity Low_complexity 2 59 0 486 322 74 5 chr3 86004077 86004279 -141520299 + L2 LINE L2 2564 2779 -535 3062 94 0 39 chr3 86004280 86004400 -141520178 + L1PA10 LINE L1 5710 5833 -358 2287 94 0 0 chr3 86004400 86004697 -141519881 + AluY SINE Alu 1 297 -14 3062 94 0 39 chr3 86004697 86005076 -141519502 + L1PA10 LINE L1 5833 6191 0 232 275 94 31 chr3 86005090 86005250 -141519328 + L2 LINE L2 2806 2975 -338 296 338 0 39 chr3 86005273 86005427 -141519151 + L2 LINE L2 3150 3297 -16 439 304 0 0 chr3 86006291 86006403 -141518175 + MIR SINE MIR 30 141 -121 2444 51 0 7 chr3 86006895 86007188 -141517390 + AluY SINE Alu 2 292 -19 562 249 124 0 chr3 86007511 86007680 -141516898 + MIR SINE MIR 67 256 -6 237 284 34 23 chr3 86009008 86009096 -141515482 + MER5A DNA MER1_type 54 142 -47 529 252 68 50 chr3 86009892 86010121 -141514457 - MER20B DNA MER1_type -66 717 481 1028 169 97 39 chr3 86010121 86010253 -141514325 - MER20B DNA MER1_type 0 219 69 369 62 0 0 chr3 86010253 86010301 -141514277 + (CA)n Simple_repeat Simple_repeat 2 49 0 1028 169 97 39 chr3 86010301 86010375 -141514203 - MER20B DNA MER1_type -150 69 1 529 252 68 50 chr3 86010375 86010423 -141514155 - MER20B DNA MER1_type -302 481 435 1797 147 30 85 chr3 86010536 86010937 -141513641 + L1MB8 LINE L1 5545 5923 -255 492 202 48 0 chr3 86010937 86011021 -141513557 + MER7A DNA MER2_type 1 86 -260 2267 171 56 0 chr3 86011047 86011440 -141513138 + MSTA LTR MaLR 14 428 0 1538 165 20 0 chr3 86011441 86011695 -141512883 + MER7A DNA MER2_type 78 336 0 1025 192 37 33 chr3 86011695 86011940 -141512638 + L1MB8 LINE L1 5922 6167 -11 228 218 11 81 chr3 86012101 86012188 -141512390 + MLT1L LTR MaLR 121 201 -414 596 232 126 35 chr3 86012353 86012551 -141512027 + MLT1L LTR MaLR 368 583 -32 301 390 14 35 chr3 86013393 86013534 -141511044 + MER91A DNA MER1_type 28 165 -31 289 236 0 0 chr3 86013573 86013628 -141510950 + MER91A DNA MER1_type 142 196 0 354 391 34 6 chr3 86014347 86014526 -141510052 + L2 LINE L2 2912 3095 -177 1548 182 59 102 chr3 86014686 86015077 -141509501 + MLT1A2 LTR MaLR 1 374 0 258 250 12 12 chr3 86015157 86015241 -141509337 + L1ME4a LINE L1 5654 5737 -384 354 279 75 58 chr3 86015309 86015535 -141509043 + L1ME4a LINE L1 5866 6095 -26 500 237 62 40 chr3 86016661 86016838 -141507740 - MIR SINE MIR 0 262 82 25 75 0 0 chr3 86017158 86017211 -141507367 + AT_rich Low_complexity Low_complexity 1 53 0 23 33 0 0 chr3 86017272 86017302 -141507276 + AT_rich Low_complexity Low_complexity 1 30 0 305 301 208 33 chr3 86017967 86018150 -141506428 + MIR SINE MIR 47 261 -1 511 233 199 14 chr3 86018786 86018932 -141505646 - MER5A DNA MER1_type -1 188 16 288 310 82 44 chr3 86018979 86019137 -141505441 - MIR SINE MIR -78 184 21 294 298 123 0 chr3 86019375 86019489 -141505089 - L2 LINE L2 -5 3308 3181 201 238 0 0 chr3 86020249 86020291 -141504287 - MER5A DNA MER1_type -139 50 9 263 295 32 11 chr3 86020324 86020419 -141504159 + MER5A DNA MER1_type 27 123 -66 34 42 0 0 chr3 86021716 86021764 -141502814 + AT_rich Low_complexity Low_complexity 1 48 0 193 359 66 47 chr3 86022507 86022613 -141501965 - L2 LINE L2 -16 3256 3149 396 276 0 37 chr3 86022805 86022883 -141501695 - MER94 DNA DNA -5 129 57 2252 131 0 0 chr3 86022883 86023195 -141501383 - AluSx SINE Alu 0 312 1 396 276 0 37 chr3 86023195 86023250 -141501328 - MER94 DNA DNA -77 57 1 21 0 0 0 chr3 86023461 86023482 -141501096 + AT_rich Low_complexity Low_complexity 1 21 0 319 307 90 33 chr3 86023639 86023883 -141500695 - L1ME4a LINE L1 -206 5915 5658 1337 264 89 23 chr3 86023983 86024411 -141500167 + MLT1E LTR MaLR 138 593 0 481 318 26 7 chr3 86024881 86025035 -141499543 + MLT1K LTR MaLR 300 456 -132 247 250 0 0 chr3 86025139 86025199 -141499379 + MLT1K LTR MaLR 529 588 0 1773 269 173 25 chr3 86025425 86026490 -141498088 - L2 LINE L2 0 3313 2094 192 40 0 0 chr3 86027555 86027580 -141496998 + (CAA)n Simple_repeat Simple_repeat 2 26 0 589 281 94 5 chr3 86027583 86027775 -141496803 - MIR SINE MIR -20 242 34 2170 123 155 13 chr3 86028073 86028448 -141496130 + MSTA LTR MaLR 1 428 0 309 265 55 138 chr3 86028479 86028732 -141495846 - MIR SINE MIR -11 251 20 515 260 125 5 chr3 86029466 86029629 -141494949 + MER5A DNA MER1_type 4 189 0 1616 143 177 0 chr3 86029688 86029982 -141494596 + THE1C LTR MaLR 30 375 0 1815 159 29 0 chr3 86030007 86030284 -141494294 - AluJo SINE Alu -27 285 1 329 321 36 21 chr3 86030330 86030470 -141494108 - MIR3 SINE MIR -64 144 3 2475 78 0 3 chr3 86030663 86030971 -141493607 + AluY SINE Alu 3 309 -2 613 232 136 15 chr3 86031081 86031279 -141493299 - L1ME3A LINE L1 -1 6169 5948 868 215 11 26 chr3 86031279 86031470 -141493108 + Charlie8 DNA MER1_type 89 276 -2141 278 276 13 0 chr3 86031570 86031646 -141492932 + Charlie8 DNA MER1_type 2339 2415 -2 2581 215 105 67 chr3 86031724 86032505 -141492073 - MER21B LTR ERV1 -52 811 1 2229 176 34 13 chr3 86032665 86033052 -141491526 - MSTD LTR MaLR 0 396 2 5307 151 30 15 chr3 86033715 86034967 -141489611 + L1MB1 LINE L1 4902 6168 0 1254 120 31 5 chr3 86034971 86035163 -141489415 - L1PA15 LINE L1 -283 5882 5686 377 111 0 0 chr3 86035163 86035222 -141489356 + L1 LINE L1 4101 4159 -1987 353 319 35 24 chr3 86035350 86035519 -141489059 - MIR SINE MIR -17 245 75 1494 106 28 18 chr3 86036333 86036550 -141488028 + L1PA13 LINE L1 5942 6160 -3 249 165 132 55 chr3 86036564 86036655 -141487923 + MIR SINE MIR 159 256 -6 195 333 104 0 chr3 86037619 86037715 -141486863 + L2 LINE L2 3147 3252 -20 658 205 55 40 chr3 86037860 86038001 -141486577 + L1MC5 LINE L1 7233 7379 -582 1962 137 68 44 chr3 86038001 86038367 -141486211 + THE1C LTR MaLR 1 375 0 658 205 55 40 chr3 86038367 86038425 -141486153 + L1MC5 LINE L1 7379 7435 -526 228 122 73 0 chr3 86038449 86038490 -141486088 + MER58 DNA MER1_type 47 90 -296 207 0 0 0 chr3 86038514 86038537 -141486041 + (TATG)n Simple_repeat Simple_repeat 2 24 0 1023 222 72 51 chr3 86038588 86038611 -141485967 + L1MC5 LINE L1 7430 7451 -510 2113 134 3 0 chr3 86038611 86038909 -141485669 - AluSx SINE Alu -13 299 1 1023 222 72 51 chr3 86038909 86039371 -141485207 + L1MC5 LINE L1 7451 7925 -36 596 261 39 7 chr3 86039429 86039582 -141484996 + MIR SINE MIR 88 245 -17 980 191 96 0 chr3 86040398 86040597 -141483981 + MER20 DNA MER1_type 1 218 -1 346 224 47 35 chr3 86040611 86040696 -141483882 + MIR SINE MIR 31 116 -146 3821 134 59 16 chr3 86042019 86042645 -141481933 - MER39B LTR ERV1 0 653 1 597 260 23 14 chr3 86044226 86044509 -141480069 - MLT1I LTR MaLR -2 407 56 185 295 32 42 chr3 86044602 86044697 -141479881 - MIR SINE MIR -12 250 157 600 211 9 0 chr3 86044958 86045072 -141479506 - MIR SINE MIR -92 170 56 2256 150 42 20 chr3 86045152 86045558 -141479020 + MSTC LTR MaLR 1 415 -13 2297 102 3 0 chr3 86046391 86046685 -141477893 - AluSg SINE Alu -13 297 3 1452 234 29 22 chr3 86047076 86047486 -141477092 - MLT1C LTR MaLR -2 465 53 550 247 0 97 chr3 86047901 86048087 -141476491 - L2 LINE L2 -1 3312 3145 425 339 31 42 chr3 86048858 86049050 -141475528 - L2 LINE L2 -2 3270 3081 431 290 73 73 chr3 86049593 86049965 -141474613 + MLT1J2 LTR MaLR 31 402 -48 245 283 104 28 chr3 86050073 86050179 -141474399 - MIR SINE MIR -71 137 24 203 229 16 0 chr3 86051311 86051372 -141473206 + (TA)n Simple_repeat Simple_repeat 1 62 0 1666 169 5 82 chr3 86052887 86053301 -141471277 - MLT1B LTR MaLR 0 390 9 348 376 0 8 chr3 86053398 86053515 -141471063 - MIR3 SINE MIR -85 123 8 185 323 81 48 chr3 86053513 86053637 -141470941 - L2 LINE L2 -6 3307 3180 * 2318 109 3 0 chr3 86054876 86055180 -141469398 + AluSg SINE Alu 2 306 -4 236 274 196 12 chr3 86055185 86055353 -141469225 + L3 LINE CR1 324 522 -1055 23 68 0 0 chr3 86055387 86055431 -141469147 + AT_rich Low_complexity Low_complexity 1 44 0 292 333 41 16 chr3 86055511 86055634 -141468944 - L2 LINE L2 -9 3304 3179 243 217 33 0 chr3 86056012 86056072 -141468506 + MLT1L LTR MaLR 140 201 -414 320 350 138 21 chr3 86056656 86056945 -141467633 + L3 LINE CR1 889 1211 -366 2392 106 0 28 chr3 86057390 86057747 -141466831 - MER1A DNA MER1_type 0 529 183 540 244 102 0 chr3 86058031 86058207 -141466371 + MLT1J2 LTR MaLR 15 208 -242 287 322 158 27 chr3 86058726 86058872 -141465706 - MER5B DNA MER1_type -7 171 7 331 251 68 99 chr3 86059320 86059511 -141465067 + MLT1L LTR MaLR 224 512 -103 1033 141 27 77 chr3 86061536 86061756 -141462822 + MER3 DNA MER1_type 1 209 0 403 200 47 12 chr3 86061761 86061846 -141462732 + L2 LINE L2 3177 3264 -8 2147 105 7 0 chr3 86062941 86063247 -141461331 - L1PA10 LINE L1 -3 6165 5858 191 260 100 0 chr3 86063804 86063854 -141460724 - L2 LINE L2 -4 3268 3214 342 350 21 14 chr3 86063990 86064133 -141460445 - L2 LINE L2 0 3313 3170 444 242 12 115 chr3 86064158 86064402 -141460176 + LTR67 LTR ERVL 6 224 -333 249 341 32 16 chr3 86064664 86064787 -141459791 - L2 LINE L2 -229 3043 2919 * 260 180 66 0 chr3 86064769 86064830 -141459748 - MIR SINE MIR -89 173 109 517 236 25 101 chr3 86064941 86065145 -141459433 - L1ME3A LINE L1 -5 6165 5986 2179 74 17 23 chr3 86065145 86065444 -141459134 - AluSg SINE Alu -13 297 1 517 236 25 101 chr3 86065444 86065515 -141459063 - L1ME3A LINE L1 -184 5986 5911 1464 238 21 3 chr3 86065525 86065908 -141458670 - L1ME3A LINE L1 -406 5756 5367 275 255 47 19 chr3 86067322 86067428 -141457150 + LTR67 LTR ERVL 449 557 0 656 316 79 20 chr3 86068099 86069158 -141455420 - L1ME3A LINE L1 -2911 3235 2114 351 354 46 8 chr3 86069427 86069557 -141455021 - L2 LINE L2 0 3272 3138 540 193 0 0 chr3 86069713 86069801 -141454777 + FLAM_A SINE Alu 32 119 -23 781 298 42 24 chr3 86069838 86069877 -141454701 + MLT1J LTR MaLR 20 57 -454 2016 126 73 22 chr3 86069877 86070234 -141454344 - THE1C LTR MaLR 0 375 1 781 298 42 24 chr3 86070234 86070483 -141454095 + MLT1J LTR MaLR 57 313 -198 207 0 0 0 chr3 86070732 86070755 -141453823 + (A)n Simple_repeat Simple_repeat 1 23 0 537 236 81 7 chr3 86070755 86070903 -141453675 - MER5A DNA MER1_type -28 161 3 1035 283 168 16 chr3 86070909 86071355 -141453223 - L2 LINE L2 -376 2938 2425 276 30 0 0 chr3 86071625 86071658 -141452920 + (TG)n Simple_repeat Simple_repeat 1 33 0 416 342 71 58 chr3 86071846 86072408 -141452170 + L2 LINE L2 2726 3302 -11 296 335 101 41 chr3 86073410 86073628 -141450950 - MIR SINE MIR -13 249 19 299 230 30 0 chr3 86073838 86073938 -141450640 - L1MC5 LINE L1 -51 7910 7808 4212 77 9 0 chr3 86074467 86075016 -141449562 + MER41A LTR ERV1 1 554 0 466 254 27 0 chr3 86075821 86075931 -141448647 + MIR SINE MIR 80 192 -70 517 281 38 6 chr3 86076216 86076376 -141448202 + MIR SINE MIR 85 249 -13 183 318 183 8 chr3 86076491 86076617 -141447961 - L2 LINE L2 -560 2754 2607 599 266 197 0 chr3 86077091 86077309 -141447269 - MIR SINE MIR 0 262 2 2487 15 0 0 chr3 86079133 86079407 -141445171 - AluYb8 SINE Alu -8 310 37 253 260 213 39 chr3 86080632 86080759 -141443819 + MIR3 SINE MIR 35 183 -25 218 341 77 0 chr3 86081498 86081589 -141442989 - MIR SINE MIR 0 262 165 599 261 43 39 chr3 86081590 86081797 -141442781 - L2 LINE L2 -5 3308 3101 1647 184 4 7 chr3 86081812 86082090 -141442488 + AluJo SINE Alu 11 287 -25 227 256 24 37 chr3 86082135 86082217 -141442361 - L2 LINE L2 -207 3106 3026 24 0 0 0 chr3 86083159 86083183 -141441395 + AT_rich Low_complexity Low_complexity 1 24 0 354 23 0 0 chr3 86083443 86083486 -141441092 + (TG)n Simple_repeat Simple_repeat 1 43 0 352 285 54 90 chr3 86083548 86084028 -141440550 + MLT1J LTR MaLR 5 467 -44 2253 74 20 3 chr3 86084148 86084444 -141440134 - AluY SINE Alu -10 301 1 1268 218 44 19 chr3 86084821 86085142 -141439436 + MLT2B1 LTR ERVL 1 329 -191 1421 150 118 0 chr3 86085142 86085396 -141439182 + Ricksha DNA DNA 5 288 -1758 * 7561 139 48 8 chr3 86085394 86086757 -141437821 + Ricksha DNA DNA 1821 3238 -8 715 178 178 0 chr3 86086764 86086897 -141437681 + MLT2B1 LTR ERVL 316 488 -32 547 48 24 0 chr3 86086897 86086980 -141437598 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 715 178 178 0 chr3 86086980 86087020 -141437558 + MLT2B1 LTR ERVL 488 520 0 2729 229 54 19 chr3 86087476 86088268 -141436310 - MER99 DNA DNA -4 824 5 369 0 0 0 chr3 86088482 86088523 -141436055 + (TG)n Simple_repeat Simple_repeat 1 41 0 359 68 17 0 chr3 86088525 86088584 -141435994 + (GA)n Simple_repeat Simple_repeat 2 61 0 252 182 0 0 chr3 86089022 86089066 -141435512 + L3 LINE CR1 647 690 -887 212 286 182 0 chr3 86089192 86089269 -141435309 + MIR SINE MIR 172 262 0 442 330 91 5 chr3 86089496 86089698 -141434880 - MIR SINE MIR -34 228 19 590 311 38 9 chr3 86092555 86092767 -141431811 + MIR SINE MIR 10 227 -35 274 211 44 11 chr3 86093140 86093230 -141431348 - MLT1G LTR MaLR 0 590 498 253 299 37 37 chr3 86093301 86093408 -141431170 - MLT1A1 LTR MaLR -248 342 236 2366 99 0 0 chr3 86093631 86093933 -141430645 - AluSx SINE Alu -8 304 3 517 298 43 43 chr3 86094501 86094709 -141429869 + MIR SINE MIR 15 222 -40 643 287 14 14 chr3 86094744 86094953 -141429625 + MLT1K LTR MaLR 373 581 -7 388 345 40 28 chr3 86094964 86095141 -141429437 - MER5A DNA MER1_type -10 179 1 908 151 15 34 chr3 86095299 86095504 -141429074 - L1MA6 LINE L1 -1 6299 6099 249 289 96 0 chr3 86096683 86096766 -141427812 - MIR SINE MIR -63 145 55 244 240 107 0 chr3 86096899 86096974 -141427604 + Charlie8 DNA MER1_type 99 181 -2236 948 240 115 40 chr3 86097159 86097212 -141427366 - MLT1I LTR MaLR 0 409 361 1871 122 47 70 chr3 86097212 86097596 -141426982 + THE1C LTR MaLR 1 375 0 948 240 115 40 chr3 86097596 86097917 -141426661 - MLT1I LTR MaLR -48 361 7 258 333 93 0 chr3 86098095 86098203 -141426375 + MIR SINE MIR 46 163 -99 1227 219 31 16 chr3 86098228 86098546 -141426032 - MLT1A1 LTR MaLR -26 441 10 378 344 15 0 chr3 86098694 86098825 -141425753 + MIR SINE MIR 78 210 -52 22 0 0 0 chr3 86098918 86098940 -141425638 + AT_rich Low_complexity Low_complexity 1 22 0 287 116 0 0 chr3 86098973 86099016 -141425562 - MLT1A1 LTR MaLR -202 163 121 2309 91 3 3 chr3 86099667 86099963 -141424615 - AluSx SINE Alu -16 296 1 390 324 27 0 chr3 86099965 86100076 -141424502 - MIR SINE MIR -113 149 36 2566 111 6 0 chr3 86100093 86100446 -141424132 + THE1A LTR MaLR 1 355 0 11909 87 5 2 chr3 86100446 86102020 -141422558 + THE1A-int LTR MaLR 1 1579 -1 2798 82 3 0 chr3 86102021 86102375 -141422203 + THE1A LTR MaLR 1 355 0 2335 158 71 9 chr3 86103968 86104405 -141420173 + MLT2C2 LTR ERVL 1 464 0 503 353 33 5 chr3 86104461 86104645 -141419933 - MIR SINE MIR -70 192 4 463 275 42 80 chr3 86105892 86106154 -141418424 + MLT1J LTR MaLR 216 467 -44 1418 18 0 18 chr3 86106441 86106610 -141417968 - L1PA3 LINE L1 -1 6154 5989 232 376 65 0 chr3 86108566 86108659 -141415919 - L2 LINE L2 -30 3283 3185 2709 104 0 3 chr3 86108915 86109280 -141415298 + THE1B LTR MaLR 1 364 0 491 240 23 104 chr3 86109545 86109766 -141414812 - L2 LINE L2 0 3313 3111 395 302 0 0 chr3 86109777 86109883 -141414695 - MER94 DNA DNA -2 132 27 1121 265 49 50 chr3 86109966 86110551 -141414027 - L2 LINE L2 -246 3067 2481 1839 140 156 0 chr3 86110681 86110996 -141413582 - THE1B LTR MaLR 0 364 1 629 237 92 60 chr3 86111709 86111958 -141412620 - MIR SINE MIR -1 261 5 289 272 40 56 chr3 86113060 86113185 -141411393 + MIR SINE MIR 79 201 -61 792 180 0 0 chr3 86113664 86113792 -141410786 - FLAM_C SINE Alu -5 128 1 319 294 0 22 chr3 86113900 86113992 -141410586 - L1MC4 LINE L1 -1339 6703 6614 225 284 0 0 chr3 86113992 86114066 -141410512 + (CATATA)n Simple_repeat Simple_repeat 2 75 0 8703 132 18 55 chr3 86114340 86115973 -141408605 + THE1C-int LTR MaLR 7 1580 0 1896 133 60 41 chr3 86115973 86116341 -141408237 + THE1C LTR MaLR 1 375 0 614 287 147 0 chr3 86116400 86116672 -141407906 + MLT1I LTR MaLR 98 409 0 406 349 49 15 chr3 86117033 86117297 -141407281 - L1MEc LINE L1 -4273 2123 1851 647 312 59 5 chr3 86117353 86117760 -141406818 - L1MEc LINE L1 -4637 1759 1331 256 235 26 35 chr3 86117855 86117970 -141406608 + L1ME LINE L1 5129 5242 -904 231 228 20 40 chr3 86118027 86118128 -141406450 - L1PA15-16 LINE L1 -4347 2502 2404 201 74 0 0 chr3 86118138 86118165 -141406413 + (TG)n Simple_repeat Simple_repeat 2 28 0 325 189 32 21 chr3 86118187 86118282 -141406296 + L1ME LINE L1 5237 5332 -814 507 285 41 14 chr3 86118284 86118505 -141406073 + L1ME LINE L1 5378 5604 -560 246 257 30 0 chr3 86118590 86118691 -141405887 - L1ME LINE L1 -398 5768 5665 251 216 102 0 chr3 86118694 86118782 -141405796 + L1MC4a LINE L1 5500 5596 -525 266 277 135 61 chr3 86119595 86119891 -141404687 - L2 LINE L2 -1 3312 2995 1955 156 106 106 chr3 86120929 86121488 -141403090 - MER89 LTR ERV1 0 559 1 601 345 14 5 chr3 86121907 86122127 -141402451 - MIR SINE MIR -12 250 29 2196 100 4 0 chr3 86123522 86123824 -141400754 - AluSg SINE Alu 0 303 1 1454 221 63 11 chr3 86123856 86124466 -141400112 - L1MC/D LINE L1 -393 5771 5127 447 294 20 20 chr3 86124994 86125242 -141399336 + L1MEc LINE L1 1296 1543 -4853 426 248 0 34 chr3 86127355 86127472 -141397106 - MER69A DNA AcHobo -64 113 1 342 316 0 0 chr3 86127571 86127704 -141396874 + L1MC4a LINE L1 5704 5836 -1972 269 210 32 26 chr3 86128164 86128332 -141396246 + L1ME3A LINE L1 5219 5387 -769 714 241 116 60 chr3 86128332 86128806 -141395772 + L1MA5 LINE L1 442 1100 -6109 13100 176 42 31 chr3 86128858 86134293 -141390285 + L1MA5 LINE L1 1864 7356 -6 1635 279 92 10 chr3 86134298 86135012 -141389566 + L1ME3A LINE L1 5377 6149 -21 295 167 151 5 chr3 86135828 86135938 -141388640 + AluJ/FRAM SINE Alu 229 326 0 7875 40 8 1 chr3 86136035 86137786 -141386792 - L1PA6 LINE L1 0 6154 4401 188 282 0 0 chr3 86138099 86138138 -141386440 - MIR SINE MIR -14 248 210 378 0 0 0 chr3 86138488 86138530 -141386048 + (CA)n Simple_repeat Simple_repeat 2 43 0 304 235 165 0 chr3 86139004 86139119 -141385459 - MER5A DNA MER1_type 0 189 56 796 165 0 23 chr3 86139182 86139315 -141385263 + FLAM_C SINE Alu 2 131 -2 721 173 14 14 chr3 86139395 86139534 -141385044 + FLAM_C SINE Alu 1 139 -4 609 288 85 21 chr3 86139883 86140119 -141384459 + MIR SINE MIR 12 262 0 498 225 8 17 chr3 86140128 86140248 -141384330 - MLT1D LTR MaLR 0 467 349 604 244 98 57 chr3 86140377 86140413 -141384165 - MLT1D LTR MaLR -155 350 317 2147 146 0 0 chr3 86140413 86140722 -141383856 - AluSx SINE Alu -3 309 1 604 244 98 57 chr3 86140722 86141000 -141383578 - MLT1D LTR MaLR -188 317 23 2699 102 25 21 chr3 86141002 86141447 -141383131 - MER4C LTR ERV1 -2 463 1 237 344 107 0 chr3 86141748 86141870 -141382708 + MIR SINE MIR 112 246 -16 755 230 56 0 chr3 86142364 86142542 -141382036 + MER5A DNA MER1_type 2 189 0 332 316 24 66 chr3 86143340 86143506 -141381072 + MIR SINE MIR 35 192 -62 334 164 0 0 chr3 86143511 86143566 -141381012 - MER5B DNA MER1_type -4 174 120 376 280 115 19 chr3 86143672 86143829 -141380749 - MER5B DNA MER1_type -1 177 6 243 298 75 21 chr3 86143940 86144034 -141380544 - MIR SINE MIR -18 244 146 3164 83 34 2 chr3 86144066 86144514 -141380064 - L1PA13 LINE L1 -1 6162 5701 282 300 30 20 chr3 86144920 86145020 -141379558 - MIR SINE MIR -63 145 45 224 255 20 0 chr3 86145516 86145567 -141379011 - L3b LINE CR1 -2 1581 1530 1565 166 87 10 chr3 86145826 86146115 -141378463 + AluJo SINE Alu 1 311 -1 932 231 39 0 chr3 86146777 86146985 -141377593 - MER20 DNA MER1_type -3 216 1 28 0 0 0 chr3 86147459 86147487 -141377091 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 86147614 86147638 -141376940 + AT_rich Low_complexity Low_complexity 1 24 0 411 265 26 90 chr3 86147733 86147922 -141376656 - MER5B DNA MER1_type -1 177 1 385 248 76 76 chr3 86147930 86148087 -141376491 - MER102a DNA MER1_type 0 330 174 250 336 97 9 chr3 86148211 86148324 -141376254 - MIR3 SINE MIR -52 156 34 263 340 49 14 chr3 86148408 86148552 -141376026 - MIR SINE MIR -34 228 80 230 329 87 74 chr3 86150125 86150356 -141374222 - L2 LINE L2 -9 3263 3030 1192 43 0 12 chr3 86150739 86150900 -141373678 + (TTTC)n Simple_repeat Simple_repeat 4 162 0 518 43 14 0 chr3 86150900 86150969 -141373609 + (TTCC)n Simple_repeat Simple_repeat 1 70 0 2093 122 10 3 chr3 86150969 86151265 -141373313 - AluSq SINE Alu -15 298 1 271 261 182 11 chr3 86152000 86152088 -141372490 - MIR SINE MIR -142 120 18 21 36 0 0 chr3 86152122 86152150 -141372428 + AT_rich Low_complexity Low_complexity 1 28 0 1418 209 63 0 chr3 86152157 86152459 -141372119 - MLT1A1 LTR MaLR -1 364 44 320 50 0 100 chr3 86152509 86152569 -141372009 - MLT1A1 LTR MaLR -311 54 1 313 281 61 0 chr3 86152591 86152673 -141371905 - MIR SINE MIR -123 139 53 21 0 0 0 chr3 86152726 86152747 -141371831 + AT_rich Low_complexity Low_complexity 1 21 0 192 356 52 22 chr3 86152796 86152931 -141371647 - MIR SINE MIR -104 158 20 1877 137 0 17 chr3 86152942 86153235 -141371343 - AluJo SINE Alu 0 312 25 2400 82 3 22 chr3 86153436 86153754 -141370824 - AluSx SINE Alu 0 312 1 1353 83 0 6 chr3 86153884 86154052 -141370526 + AluSp SINE Alu 1 167 -146 264 77 0 0 chr3 86154421 86154460 -141370118 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 4887 75 44 0 chr3 86154469 86155131 -141369447 - LTR8 LTR ERV1 0 691 1 1657 186 0 0 chr3 86155134 86155403 -141369175 - AluJb SINE Alu -38 274 6 724 231 28 115 chr3 86155862 86156183 -141368395 + L2 LINE L2 3020 3312 -1 2221 98 44 0 chr3 86156207 86156502 -141368076 - AluSx SINE Alu -4 308 1 991 215 62 0 chr3 86156765 86156974 -141367604 - MER58A DNA MER1_type -2 222 1 1168 171 73 7 chr3 86157068 86157343 -141367235 - MER33 DNA MER1_type -31 293 1 414 322 44 6 chr3 86157351 86157534 -141367044 - MER20 DNA MER1_type 0 219 30 2513 189 42 63 chr3 86158810 86159519 -141365059 + LTR8A LTR ERV1 34 727 0 1782 177 7 3 chr3 86159519 86159813 -141364765 - AluSx SINE Alu -17 295 1 782 151 0 0 chr3 86160327 86160478 -141364100 - AluSg/x SINE Alu 0 315 165 468 118 0 0 chr3 86160479 86160547 -141364031 - AluJb SINE Alu -208 104 37 258 143 12 0 chr3 86211448 86211495 -141313083 - MSTC LTR MaLR -382 50 1 934 275 115 75 chr3 86211591 86212032 -141312546 + L1MEd LINE L1 35 457 -5829 854 168 0 0 chr3 86212032 86212157 -141312421 - FLAM_C SINE Alu -8 125 1 934 275 115 75 chr3 86212157 86212988 -141311590 + L1MEd LINE L1 457 1400 -4886 593 231 109 7 chr3 86213582 86213729 -141310849 - AluJb SINE Alu -10 302 141 22 0 0 0 chr3 86213802 86213824 -141310754 + AT_rich Low_complexity Low_complexity 1 22 0 2463 62 0 13 chr3 86213833 86214138 -141310440 - AluY SINE Alu -10 301 1 575 229 44 100 chr3 86214408 86214549 -141310029 + L1MEd LINE L1 2100 2220 -3909 1521 176 29 18 chr3 86214549 86214673 -141309905 + AluJo SINE Alu 1 122 -190 195 42 0 0 chr3 86214673 86214697 -141309881 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1521 176 29 18 chr3 86214697 86214851 -141309727 + AluJo SINE Alu 122 282 -30 575 229 44 100 chr3 86214851 86214980 -141309598 + L1MEd LINE L1 2220 2355 -3774 471 248 103 64 chr3 86214972 86215206 -141309372 + L1M4 LINE L1 4008 4250 -1896 * 525 226 78 0 chr3 86215208 86215323 -141309255 - FLAM_C SINE Alu -18 125 2 279 268 14 0 chr3 86215334 86215405 -141309173 + L1M4 LINE L1 4280 4351 -1795 1909 118 27 0 chr3 86215421 86215684 -141308894 + AluSx SINE Alu 1 270 -42 286 265 64 41 chr3 86216736 86217007 -141307571 - L1ME1 LINE L1 -254 6148 5869 1694 222 21 16 chr3 86217320 86217748 -141306830 + L1M4 LINE L1 4268 4697 -1449 1535 191 14 11 chr3 86218323 86218600 -141305978 - AluJo SINE Alu -34 278 1 279 102 17 85 chr3 86220764 86220823 -141303755 - MLT1B LTR MaLR -335 55 1 315 182 15 15 chr3 86220834 86220900 -141303678 - L1M4 LINE L1 -1593 4553 4488 1897 88 0 4 chr3 86220928 86221166 -141303412 + AluSg SINE Alu 55 291 -19 815 244 108 54 chr3 86221168 86221577 -141303001 - L1MEc LINE L1 -4603 1793 1363 2064 128 10 0 chr3 86221636 86221934 -141302644 + AluSx SINE Alu 1 301 -11 641 267 61 8 chr3 86221983 86222245 -141302333 - L1ME1 LINE L1 -876 5506 5231 2702 195 176 112 chr3 86222359 86223612 -141300966 + L1M4 LINE L1 3786 5119 -1027 1940 218 79 16 chr3 86224063 86225081 -141299497 - L1ME1 LINE L1 -3473 2909 1731 520 227 53 0 chr3 86225090 86225107 -141299471 + L1M4 LINE L1 4690 4705 -1441 2330 83 7 3 chr3 86225107 86225408 -141299170 + AluY SINE Alu 1 302 -9 520 227 53 0 chr3 86225408 86225522 -141299056 + L1M4 LINE L1 4705 4828 -1318 620 297 88 33 chr3 86225789 86226153 -141298425 - MLT2F LTR ERVL 0 663 280 423 329 43 19 chr3 86226231 86226392 -141298186 - MLT2F LTR ERVL -493 170 6 1535 174 3 47 chr3 86226464 86226763 -141297815 + AluJb SINE Alu 1 286 -26 213 409 0 0 chr3 86227154 86227242 -141297336 + L2 LINE L2 3102 3189 -83 338 292 38 72 chr3 86227312 86227521 -141297057 - L2 LINE L2 0 3313 3112 206 233 0 0 chr3 86228578 86228621 -141295957 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 261 288 0 0 chr3 86228757 86228816 -141295762 + (CGTG)n Simple_repeat Simple_repeat 4 62 0 440 354 52 18 chr3 86228876 86229105 -141295473 - L2 LINE L2 -273 3040 2804 296 132 19 0 chr3 86229811 86229864 -141294714 + L1MB7 LINE L1 5221 5274 -872 * 389 197 22 102 chr3 86229862 86229938 -141294640 + L1MD3 LINE L1 7863 7925 -70 2454 55 7 3 chr3 86229938 86230248 -141294330 - AluY SINE Alu 0 311 1 389 197 22 102 chr3 86230248 86230308 -141294270 + L1MD3 LINE L1 7925 7988 -7 2952 239 88 0 chr3 86230314 86231101 -141293477 + L1MB7 LINE L1 5320 6175 -9 784 247 98 11 chr3 86232946 86233120 -141291458 + MER5A DNA MER1_type 1 189 0 1080 173 11 0 chr3 86233168 86233347 -141291231 + AluJb SINE Alu 132 312 0 275 210 16 49 chr3 86233668 86233738 -141290840 - MIR SINE MIR -102 106 39 1795 184 7 7 chr3 86233858 86234162 -141290416 - AluJb SINE Alu -8 304 1 291 284 83 0 chr3 86235859 86235968 -141288610 + MIR SINE MIR 87 204 -58 467 337 45 47 chr3 86236001 86236469 -141288109 - MER89-int LTR ERV1 -1841 4960 2296 533 345 51 64 chr3 86236571 86237349 -141287229 - MER89-int LTR ERV1 -4306 2495 1728 210 333 51 0 chr3 86238971 86239049 -141285529 + L2 LINE L2 3230 3311 -2 388 217 50 106 chr3 86240196 86240376 -141284202 - MLT1J LTR MaLR -44 467 298 343 320 16 0 chr3 86240420 86240545 -141284033 - MLT1J LTR MaLR -348 163 37 1866 135 0 11 chr3 86240653 86240934 -141283644 - L1PA10 LINE L1 0 6168 5891 22 56 0 0 chr3 86241602 86241638 -141282940 + AT_rich Low_complexity Low_complexity 1 36 0 346 262 117 0 chr3 86242308 86242411 -141282167 - MIR3 SINE MIR -15 193 79 3440 55 0 0 chr3 86243613 86244010 -141280568 - L1PA8 LINE L1 -7 6165 5769 2477 79 0 13 chr3 86244011 86244326 -141280252 - AluY SINE Alu 0 311 1 383 297 86 31 chr3 86244998 86245126 -141279452 + L2 LINE L2 3138 3272 0 1650 154 21 28 chr3 86246135 86246421 -141278157 - AluJo SINE Alu -24 288 5 398 0 0 0 chr3 86246661 86246709 -141277869 + L1PA3 LINE L1 6108 6155 0 1280 96 0 22 chr3 86246711 86246889 -141277689 + AluY SINE Alu 130 303 -8 185 321 9 98 chr3 86247152 86247264 -141277314 + MIR SINE MIR 22 123 -85 538 206 18 148 chr3 86247734 86247957 -141276621 + MLT1A1 LTR MaLR 1 194 -171 575 57 0 114 chr3 86247998 86248086 -141276492 - MADE1 DNA Mariner 0 80 3 24 0 0 0 chr3 86248234 86248258 -141276320 + AT_rich Low_complexity Low_complexity 1 24 0 187 316 35 53 chr3 86248497 86248564 -141276014 + MIR SINE MIR 134 200 -62 2488 110 37 11 chr3 86248564 86248919 -141275659 + THE1B LTR MaLR 1 364 0 187 316 35 53 chr3 86248919 86248965 -141275613 + MIR SINE MIR 200 245 -17 369 206 0 0 chr3 86248978 86249080 -141275498 + (TGG)n Simple_repeat Simple_repeat 1 102 0 660 206 156 25 chr3 86249111 86249271 -141275307 - MER5A DNA MER1_type -6 183 3 22 56 0 0 chr3 86249303 86249339 -141275239 + AT_rich Low_complexity Low_complexity 1 36 0 27 29 0 0 chr3 86251047 86251081 -141273497 + AT_rich Low_complexity Low_complexity 1 34 0 1121 253 58 41 chr3 86252146 86252557 -141272021 - LTR16C LTR ERVL -12 479 62 186 167 0 0 chr3 86252678 86252714 -141271864 + (TCTA)n Simple_repeat Simple_repeat 3 38 0 1368 152 82 15 chr3 86252714 86252984 -141271594 - L1MB4 LINE L1 -7 6173 5886 659 245 97 30 chr3 86253298 86253567 -141271011 - MER41E LTR ERV1 0 512 226 26 50 0 0 chr3 86254022 86254062 -141270516 + AT_rich Low_complexity Low_complexity 1 40 0 599 203 32 0 chr3 86255279 86255402 -141269176 - MER90 LTR ERV1 0 614 488 356 389 12 12 chr3 86256597 86256841 -141267737 + MIR SINE MIR 8 251 -11 3020 174 64 22 chr3 86257016 86257707 -141266871 + L1MB8 LINE L1 5402 6121 -57 1047 182 6 0 chr3 86258634 86258815 -141265763 - MER5A DNA MER1_type -3 186 5 2182 174 56 12 chr3 86260385 86260793 -141263785 - MSTB LTR MaLR 0 426 1 375 237 8 99 chr3 86261029 86261160 -141263418 + MLT1H LTR MaLR 65 167 -382 309 237 145 21 chr3 86261360 86261505 -141263073 + MLT1H LTR MaLR 383 563 -4 647 263 58 19 chr3 86262466 86262725 -141261853 + LTR37A LTR ERV1 47 315 -111 2133 167 8 16 chr3 86262766 86263150 -141261428 - MLT1B LTR MaLR 0 390 10 390 262 13 67 chr3 86263916 86264065 -141260513 + L2 LINE L2 3173 3313 0 270 336 17 17 chr3 86264067 86264186 -141260392 + MIR SINE MIR 97 215 -47 1853 216 106 42 chr3 86264262 86264349 -141260229 - LTR48B LTR ERV1 0 644 564 2288 109 7 0 chr3 86264349 86264651 -141259927 + AluSx SINE Alu 1 304 -8 1853 216 106 42 chr3 86264651 86265166 -141259412 - LTR48B LTR ERV1 -80 564 3 378 139 0 0 chr3 86266027 86266099 -141258479 + (CAGAGA)n Simple_repeat Simple_repeat 3 74 0 1909 187 10 89 chr3 86267056 86267570 -141257008 - MER74A LTR ERVL -69 489 17 288 154 0 0 chr3 86267579 86267631 -141256947 + (TA)n Simple_repeat Simple_repeat 2 53 0 634 324 98 9 chr3 86269770 86270134 -141254444 + L2 LINE L2 2714 3105 -208 40460 44 6 1 chr3 86270323 86276338 -141248240 + L1PA4 LINE L1 105 6147 -8 2159 221 53 2 chr3 86276349 86276911 -141247667 + L1ME1 LINE L1 5315 5905 -261 * 2883 202 55 56 chr3 86276906 86278172 -141246406 + L1MB8 LINE L1 4895 6163 -15 862 263 71 43 chr3 86278284 86278679 -141245899 - MLT1I LTR MaLR -3 406 1 549 252 58 58 chr3 86278679 86278936 -141245642 - MIR SINE MIR -4 258 1 257 267 17 0 chr3 86279653 86279713 -141244865 + L2 LINE L2 3205 3265 -7 209 250 28 14 chr3 86280944 86281016 -141243562 - MIR SINE MIR -7 255 183 292 333 0 0 chr3 86282070 86282145 -141242433 + MIR3 SINE MIR 82 156 -52 1695 137 53 27 chr3 86282392 86282692 -141241886 - AluY SINE Alu -3 308 1 2250 91 0 0 chr3 86282957 86283243 -141241335 + AluY SINE Alu 1 286 -25 588 254 0 8 chr3 86283378 86283512 -141241066 - FLAM_A SINE Alu -8 134 2 1759 224 31 12 chr3 86284037 86284456 -141240122 + MLT1C LTR MaLR 41 467 0 727 245 73 56 chr3 86285162 86285448 -141239130 - L2 LINE L2 0 3313 3023 1572 176 19 77 chr3 86285518 86285932 -141238646 + MLT1B LTR MaLR 1 390 0 1110 298 21 13 chr3 86286150 86286529 -141238049 + L2 LINE L2 2319 2700 -614 1026 179 14 19 chr3 86286530 86286742 -141237836 + MER89 LTR ERV1 349 559 0 284 233 23 35 chr3 86287334 86287420 -141237158 + MER103 DNA DNA 41 125 -41 646 295 36 18 chr3 86288248 86288472 -141236106 + MIR SINE MIR 16 243 -19 1344 143 12 219 chr3 86288610 86289035 -141235543 + MLT2B3 LTR ERVL 170 506 -9 21 0 0 0 chr3 86289433 86289454 -141235124 + AT_rich Low_complexity Low_complexity 1 21 0 3031 158 10 12 chr3 86289968 86290481 -141234097 + MER41E LTR ERV1 1 512 0 3623 125 12 5 chr3 86290555 86291116 -141233462 - MER34B LTR ERV1 0 565 1 22 0 0 0 chr3 86292246 86292268 -141232310 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 86293878 86293906 -141230672 + AT_rich Low_complexity Low_complexity 1 28 0 37 81 0 0 chr3 86293928 86294014 -141230564 + AT_rich Low_complexity Low_complexity 1 86 0 1053 261 49 71 chr3 86294539 86295030 -141229548 + MLT1E2 LTR MaLR 1 480 -146 1934 145 51 23 chr3 86295381 86295732 -141228846 + MER46B DNA MER2_type 1 236 0 282 314 95 9 chr3 86296249 86296354 -141228224 - MIR SINE MIR -78 130 17 371 269 50 8 chr3 86296694 86296813 -141227765 - MIR SINE MIR -109 153 30 520 273 97 0 chr3 86297494 86297648 -141226930 + MLT1E2 LTR MaLR 312 480 -146 183 172 0 0 chr3 86298520 86298549 -141226029 + MIR SINE MIR 30 58 -204 297 331 0 0 chr3 86298716 86298837 -141225741 + MER117 DNA MER1_type 10 130 -67 396 313 9 0 chr3 86298906 86299018 -141225560 - MIR3 SINE MIR -49 159 47 350 309 124 21 chr3 86299479 86299712 -141224866 + L2 LINE L2 2884 3140 -173 236 259 105 80 chr3 86299752 86299914 -141224664 + L2 LINE L2 3138 3303 -10 1027 257 5 0 chr3 86299981 86300203 -141224375 + MER58A DNA MER1_type 2 224 0 793 309 63 40 chr3 86300376 86300822 -141223756 - L2 LINE L2 -3 3310 2855 415 312 183 10 chr3 86301151 86301353 -141223225 + MIR SINE MIR 26 262 0 585 296 156 19 chr3 86301405 86301719 -141222859 - L3 LINE CR1 -128 1449 1093 328 254 17 25 chr3 86301741 86301859 -141222719 - HAL1b LINE L1 -511 837 721 395 369 80 16 chr3 86302207 86302521 -141222057 - L3 LINE CR1 -881 696 363 380 291 37 106 chr3 86302662 86303012 -141221566 + MLT1I LTR MaLR 78 403 -6 360 307 58 21 chr3 86303181 86303370 -141221208 + L2 LINE L2 3083 3278 -35 2211 150 20 60 chr3 86304704 86305150 -141219428 + MSTC LTR MaLR 1 428 0 249 170 19 19 chr3 86305171 86305224 -141219354 + MLT1E1 LTR MaLR 59 111 -543 1121 219 26 0 chr3 86305248 86305481 -141219097 + MLT1E2 LTR MaLR 388 626 0 183 333 115 60 chr3 86305630 86305882 -141218696 - L2 LINE L2 0 3272 3007 318 26 0 0 chr3 86306738 86306777 -141217801 + (CA)n Simple_repeat Simple_repeat 2 40 0 2204 193 38 2 chr3 86307221 86307673 -141216905 + LTR10B LTR ERV1 38 505 0 431 255 186 5 chr3 86308033 86308221 -141216357 - MIR SINE MIR -28 234 13 609 263 43 38 chr3 86308246 86308469 -141216109 + MIR SINE MIR 26 249 -13 3261 24 0 0 chr3 86309324 86309701 -141214877 - L1PA3 LINE L1 -5 6150 5774 9028 27 2 0 chr3 86309701 86311170 -141213408 + L1P1 LINE L1 4267 5738 -417 24 32 0 0 chr3 86311805 86311836 -141212742 + AT_rich Low_complexity Low_complexity 1 31 0 477 310 110 10 chr3 86312315 86312515 -141212063 - MIR SINE MIR -6 256 37 301 276 0 11 chr3 86312520 86312607 -141211971 + (TA)n Simple_repeat Simple_repeat 1 86 0 462 267 189 0 chr3 86312717 86312897 -141211681 - MIR SINE MIR -45 217 4 207 206 79 48 chr3 86313832 86313895 -141210683 + MIR SINE MIR 188 252 -10 304 328 121 0 chr3 86314119 86314235 -141210343 - L2 LINE L2 -6 3307 3178 588 275 52 48 chr3 86314687 86314916 -141209662 + MIR SINE MIR 33 262 0 371 274 9 66 chr3 86316419 86316645 -141207933 - Charlie8 DNA MER1_type -2162 255 43 192 250 0 0 chr3 86317822 86317886 -141206692 + (TA)n Simple_repeat Simple_repeat 1 64 0 335 232 27 27 chr3 86317906 86318018 -141206560 + L1MC4 LINE L1 7914 8025 -17 2958 72 0 0 chr3 86318058 86318448 -141206130 + L1PA13 LINE L1 5768 6157 -6 241 264 116 31 chr3 86319331 86319460 -141205118 - Charlie8 DNA MER1_type -2232 185 46 1527 217 52 5 chr3 86319542 86319705 -141204873 + MLT1B LTR MaLR 3 157 -233 2110 103 0 44 chr3 86319705 86320026 -141204552 + AluSx SINE Alu 1 307 -5 1527 217 52 5 chr3 86320026 86320231 -141204347 + MLT1B LTR MaLR 157 388 -2 1491 191 114 36 chr3 86320369 86320835 -141203743 + Charlie4a DNA MER1_type 1 502 -6 227 346 20 40 chr3 86321172 86321273 -141203305 + L2 LINE L2 3141 3239 -33 583 299 36 23 chr3 86321520 86321741 -141202837 - MIR SINE MIR -8 254 31 344 302 12 0 chr3 86321963 86322049 -141202529 - MIR SINE MIR -128 134 48 180 323 16 0 chr3 86323344 86323406 -141201172 + MIR SINE MIR 75 137 -71 462 239 34 8 chr3 86323444 86323561 -141201017 + L2 LINE L2 3193 3312 -1 1701 142 80 33 chr3 86324117 86324454 -141200124 - MSTB1 LTR MaLR 0 432 80 2160 121 3 0 chr3 86325275 86325565 -141199013 + AluSx SINE Alu 1 291 -21 1350 240 52 79 chr3 86325843 86326548 -141198030 - MER20B DNA MER1_type -34 749 64 378 312 101 11 chr3 86326716 86326905 -141197673 - MIR SINE MIR -44 218 13 780 274 56 7 chr3 86327017 86327287 -141197291 - L1MCc LINE L1 -5136 1287 1005 276 358 29 29 chr3 86327408 86327612 -141196966 - L1MCc LINE L1 -5405 1018 815 231 317 111 34 chr3 86327704 86327966 -141196612 - L1MCc LINE L1 -5842 581 300 847 118 0 31 chr3 86327971 86328098 -141196480 - FLAM_A SINE Alu -4 138 16 331 271 110 7 chr3 86328175 86328330 -141196248 - L1MCc LINE L1 -6229 194 24 414 0 0 0 chr3 86328527 86328573 -141196005 + (TCTA)n Simple_repeat Simple_repeat 1 46 0 296 225 14 0 chr3 86328655 86328726 -141195852 - HAL1 LINE L1 -192 2315 2244 2528 141 51 0 chr3 86328917 86329328 -141195250 + MSTB1 LTR MaLR 1 432 0 267 288 27 0 chr3 86329504 86329615 -141194963 - HAL1 LINE L1 -342 2165 2052 370 269 194 0 chr3 86329715 86329890 -141194688 - HAL1 LINE L1 -604 1903 1695 1098 228 98 42 chr3 86329916 86330178 -141194400 - MLT1D LTR MaLR -2 503 257 2749 6 3 10 chr3 86330178 86330491 -141194087 - AluYa5 SINE Alu 0 311 1 1098 228 98 42 chr3 86330491 86330680 -141193898 - MLT1D LTR MaLR -248 257 6 314 307 73 57 chr3 86330693 86330763 -141193815 - HAL1 LINE L1 -849 1658 1591 1919 150 0 7 chr3 86330763 86331102 -141193476 - AluSx SINE Alu 0 337 1 314 307 73 57 chr3 86331102 86331346 -141193232 - HAL1 LINE L1 -916 1591 1338 404 312 67 11 chr3 86331402 86331671 -141192907 - HAL1 LINE L1 -1427 1080 797 373 267 85 24 chr3 86331990 86332155 -141192423 + MIR SINE MIR 86 260 -2 1846 152 149 11 chr3 86332190 86332566 -141192012 - MSTA LTR MaLR 0 428 1 330 268 68 5 chr3 86332631 86332871 -141191707 + L1MEc LINE L1 2177 2394 -3821 299 309 53 39 chr3 86332981 86333188 -141191390 - MLT1J LTR MaLR -230 281 72 256 315 49 63 chr3 86333287 86333430 -141191148 - MIR SINE MIR -121 141 1 354 350 0 10 chr3 86334225 86334328 -141190250 - MIR SINE MIR -160 102 1 21 36 0 0 chr3 86335026 86335054 -141189524 + AT_rich Low_complexity Low_complexity 1 28 0 548 258 41 36 chr3 86335223 86335417 -141189161 - MIR SINE MIR -66 196 2 306 73 0 0 chr3 86336532 86336573 -141188005 + (TC)n Simple_repeat Simple_repeat 2 42 0 360 0 0 0 chr3 86336573 86336613 -141187965 + (CA)n Simple_repeat Simple_repeat 1 40 0 434 349 92 5 chr3 86336702 86336920 -141187658 - MIR SINE MIR -6 256 20 1026 183 144 52 chr3 86337319 86337625 -141186953 + MLT1C LTR MaLR 134 467 0 435 236 0 121 chr3 86338301 86338458 -141186120 + L2 LINE L2 3175 3312 -1 25 0 0 0 chr3 86340408 86340433 -141184145 + AT_rich Low_complexity Low_complexity 1 25 0 675 307 88 19 chr3 86342085 86342202 -141182376 + L1MC4a LINE L1 5260 5367 -754 1900 93 8 0 chr3 86342202 86342476 -141182102 + AluSc SINE Alu 33 308 0 675 307 88 19 chr3 86342476 86342977 -141181601 + L1MC4a LINE L1 5367 5785 -336 224 361 72 6 chr3 86343494 86343660 -141180918 + L2 LINE L2 3119 3295 -18 336 267 53 61 chr3 86343810 86343941 -141180637 + MER5B DNA MER1_type 1 130 -48 2776 13 0 0 chr3 86344143 86344446 -141180132 - AluYb8 SINE Alu 0 318 16 358 302 62 17 chr3 86344543 86344722 -141179856 - MLT1K LTR MaLR -15 573 387 226 148 56 0 chr3 86344768 86344822 -141179756 - MLT1L LTR MaLR -212 403 347 1246 197 71 34 chr3 86345064 86345255 -141179323 - MER63 DNA MER1_type -5 1057 848 1187 210 5 5 chr3 86345255 86345479 -141179099 + MER58A DNA MER1_type 1 224 0 1246 197 71 34 chr3 86345479 86345612 -141178966 - MER63 DNA MER1_type -214 848 721 290 206 110 0 chr3 86346911 86346984 -141177594 - L2 LINE L2 0 3272 3192 22 56 0 0 chr3 86349233 86349269 -141175309 + AT_rich Low_complexity Low_complexity 1 36 0 245 216 31 82 chr3 86349685 86349782 -141174796 - L1ME3A LINE L1 -111 6059 5968 464 236 135 25 chr3 86350128 86350365 -141174213 - HAL1 LINE L1 -1448 1059 797 1128 210 24 17 chr3 86352545 86352836 -141171742 - L1M4 LINE L1 -899 5247 4955 212 237 0 0 chr3 86352850 86352888 -141171690 - L2 LINE L2 -19 3253 3216 722 312 21 4 chr3 86352998 86353235 -141171343 - MIR SINE MIR -2 260 20 2070 154 67 42 chr3 86353286 86353720 -141170858 + L1MB8 LINE L1 5733 6177 -1 23 33 0 0 chr3 86354053 86354083 -141170495 + AT_rich Low_complexity Low_complexity 1 30 0 1991 159 7 45 chr3 86354975 86355378 -141169200 - MLT1B LTR MaLR 0 390 3 261 0 0 0 chr3 86355528 86355557 -141169021 + (CA)n Simple_repeat Simple_repeat 2 30 0 279 125 42 0 chr3 86355557 86355629 -141168949 + GA-rich Low_complexity Low_complexity 1 75 0 293 200 84 32 chr3 86356926 86357021 -141167557 + MIR3 SINE MIR 103 202 -6 330 360 30 30 chr3 86357114 86357350 -141167228 + MLT1K LTR MaLR 11 246 -342 378 282 35 21 chr3 86357471 86357613 -141166965 + MLT1K LTR MaLR 436 579 -9 360 366 12 12 chr3 86357944 86358108 -141166470 - MIR3 SINE MIR -17 191 28 363 303 49 14 chr3 86358335 86358477 -141166101 + MIR SINE MIR 104 250 -12 21 0 0 0 chr3 86358843 86358864 -141165714 + AT_rich Low_complexity Low_complexity 1 21 0 2054 122 3 3 chr3 86359615 86359909 -141164669 + AluSx SINE Alu 4 297 -15 295 278 14 0 chr3 86360090 86360162 -141164416 + L2 LINE L2 2553 2625 -689 223 186 0 29 chr3 86360175 86360245 -141164333 + (TA)n Simple_repeat Simple_repeat 1 68 0 452 234 32 60 chr3 86360251 86360499 -141164079 - L1ME LINE L1 -404 5717 5416 207 288 198 58 chr3 86362072 86362350 -141162228 - L2 LINE L2 0 3313 2997 2249 84 0 11 chr3 86363404 86363737 -141160841 + AluY SINE Alu 1 330 0 21 0 0 0 chr3 86364002 86364023 -141160555 + AT_rich Low_complexity Low_complexity 1 21 0 240 250 0 33 chr3 86364089 86364149 -141160429 + L3 LINE CR1 1516 1573 -4 945 245 30 0 chr3 86364414 86364614 -141159964 - MER58A DNA MER1_type -8 216 11 265 323 10 0 chr3 86364947 86365046 -141159532 + GA-rich Low_complexity Low_complexity 1 100 0 311 237 58 43 chr3 86366237 86366376 -141158202 + LTR67 LTR ERVL 413 553 -4 317 281 67 10 chr3 86367724 86367859 -141156719 + MIR SINE MIR 16 159 -66 21 36 0 0 chr3 86367888 86367916 -141156662 + AT_rich Low_complexity Low_complexity 1 28 0 229 255 20 0 chr3 86368203 86368254 -141156324 + MLT1K LTR MaLR 197 248 -340 270 263 0 38 chr3 86368413 86368493 -141156085 + MLT1K LTR MaLR 459 535 -53 7999 110 21 22 chr3 86368536 86369794 -141154784 + HSMAR2 DNA Mariner 3 1259 -43 1094 198 5 40 chr3 86369794 86370016 -141154562 - AluJb SINE Alu -25 287 74 462 301 32 16 chr3 86370349 86370635 -141153943 - MLT1J1 LTR MaLR -109 337 1 336 344 49 6 chr3 86370767 86370950 -141153628 - Charlie8 DNA MER1_type -2152 265 75 46 78 0 0 chr3 86371088 86371190 -141153388 + AT_rich Low_complexity Low_complexity 1 102 0 1297 208 0 0 chr3 86371257 86371488 -141153090 - 7SLRNA srpRNA srpRNA -89 231 1 1943 149 3 0 chr3 86371716 86372004 -141152574 - AluSx SINE Alu -16 296 8 22 70 0 0 chr3 86372338 86372381 -141152197 + AT_rich Low_complexity Low_complexity 1 43 0 3740 170 48 12 chr3 86372867 86373614 -141150964 - L1MB8 LINE L1 0 6178 5405 23 33 0 0 chr3 86373658 86373688 -141150890 + AT_rich Low_complexity Low_complexity 1 30 0 361 173 37 0 chr3 86373932 86374013 -141150565 - L2 LINE L2 -668 2646 2563 760 220 38 32 chr3 86374219 86374405 -141150173 + MER5A DNA MER1_type 1 187 -2 27 0 0 0 chr3 86376259 86376286 -141148292 + AT_rich Low_complexity Low_complexity 1 27 0 1683 122 107 9 chr3 86376346 86376674 -141147904 + L1MB2 LINE L1 5808 6167 -4 279 309 27 13 chr3 86377290 86377439 -141147139 - L1ME LINE L1 -402 5719 5569 21 0 0 0 chr3 86377591 86377612 -141146966 + AT_rich Low_complexity Low_complexity 1 21 0 381 291 101 13 chr3 86377612 86377849 -141146729 - L1ME LINE L1 -768 5378 5121 200 167 21 0 chr3 86378128 86378176 -141146402 + (ATG)n Simple_repeat Simple_repeat 2 50 0 1156 187 43 0 chr3 86378778 86378987 -141145591 - AluJo SINE Alu -94 218 1 195 100 0 0 chr3 86379321 86379351 -141145227 + (A)n Simple_repeat Simple_repeat 1 30 0 498 243 33 50 chr3 86379410 86379591 -141144987 + MIR SINE MIR 30 207 -55 201 255 21 0 chr3 86381011 86381058 -141143520 + MIR3 SINE MIR 108 155 -53 519 251 147 19 chr3 86381130 86381341 -141143237 - MIR SINE MIR -15 247 10 293 342 122 7 chr3 86381866 86382128 -141142450 + L2 LINE L2 2770 3060 -253 515 312 131 53 chr3 86382226 86382585 -141141993 - MER115 DNA AcHobo -262 431 45 323 322 35 0 chr3 86382688 86382775 -141141803 + L2 LINE L2 3186 3275 -38 219 69 0 0 chr3 86382800 86382829 -141141749 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 267 278 139 14 chr3 86382832 86382976 -141141602 - MIR SINE MIR -10 252 91 183 80 0 0 chr3 86383360 86383385 -141141193 + (TGAA)n Simple_repeat Simple_repeat 2 26 0 181 140 0 60 chr3 86384099 86384149 -141140429 + (GAAAA)n Simple_repeat Simple_repeat 2 48 0 344 77 19 0 chr3 86384406 86384458 -141140120 + (CA)n Simple_repeat Simple_repeat 2 54 0 183 80 0 0 chr3 86384459 86384484 -141140094 + (TATATG)n Simple_repeat Simple_repeat 4 28 0 215 276 13 13 chr3 86384645 86384721 -141139857 + (TTA)n Simple_repeat Simple_repeat 1 76 0 201 39 0 0 chr3 86386444 86386470 -141138108 + (TG)n Simple_repeat Simple_repeat 2 27 0 237 178 0 0 chr3 86386542 86386587 -141137991 + (TG)n Simple_repeat Simple_repeat 1 45 0 21 0 0 0 chr3 86388354 86388375 -141136203 + AT_rich Low_complexity Low_complexity 1 21 0 2325 109 0 0 chr3 86388446 86388748 -141135830 - AluSg SINE Alu -8 302 1 26 50 0 0 chr3 86389086 86389126 -141135452 + AT_rich Low_complexity Low_complexity 1 40 0 456 338 103 13 chr3 86391049 86391283 -141133295 - MIR SINE MIR -6 256 2 346 317 156 11 chr3 86392085 86392271 -141132307 - MIR SINE MIR -3 259 47 268 218 23 11 chr3 86392295 86392382 -141132196 + GA-rich Low_complexity Low_complexity 1 88 0 414 281 129 24 chr3 86392481 86392691 -141131887 - L2 LINE L2 -571 2743 2512 209 278 14 14 chr3 86393147 86393219 -141131359 - MIR SINE MIR -49 213 142 311 341 138 0 chr3 86393227 86393394 -141131184 + LTR33 LTR ERVL 18 207 -314 471 298 30 60 chr3 86393539 86393774 -141130804 + LTR33 LTR ERVL 294 521 0 220 303 24 9 chr3 86393781 86393890 -141130688 - MIR SINE MIR -68 140 2 269 262 33 129 chr3 86394083 86394354 -141130224 + L2 LINE L2 3069 3313 0 386 211 14 0 chr3 86395589 86395660 -141128918 + MLT1I LTR MaLR 338 409 0 285 309 32 0 chr3 86395770 86395864 -141128714 + MIR SINE MIR 91 187 -75 21 0 0 0 chr3 86396431 86396452 -141128126 + AT_rich Low_complexity Low_complexity 1 21 0 2129 88 7 7 chr3 86396453 86396738 -141127840 - AluY SINE Alu -24 287 3 1762 216 23 36 chr3 86396849 86397326 -141127252 + L1M4 LINE L1 4039 4509 -1637 499 291 41 6 chr3 86397438 86397610 -141126968 + MIR SINE MIR 81 258 -4 2002 136 19 48 chr3 86397610 86397985 -141126593 - THE1B LTR MaLR 0 364 1 229 222 0 56 chr3 86398430 86398484 -141126094 + MLT1I LTR MaLR 99 149 -260 673 315 80 13 chr3 86398629 86398943 -141125635 - MLT1J LTR MaLR -14 497 163 432 289 48 18 chr3 86399313 86399479 -141125099 - Charlie8 DNA MER1_type -2142 275 105 608 295 66 37 chr3 86399727 86399971 -141124607 - MIR SINE MIR -11 251 1 2863 248 43 61 chr3 86400745 86401727 -141122851 + L1MEc LINE L1 7 970 -5426 661 182 57 6 chr3 86401777 86401936 -141122642 + L1M4 LINE L1 4594 4760 -1386 230 370 20 34 chr3 86502142 86502288 -141022290 + L3 LINE CR1 1053 1196 -381 949 119 8 0 chr3 86502312 86502438 -141022140 + AluSq/x SINE Alu 9 135 -177 2236 126 10 3 chr3 86502438 86502748 -141021830 + AluSq SINE Alu 1 312 -1 1075 190 5 46 chr3 86502788 86502904 -141021674 + MER58A DNA MER1_type 1 105 -2315 2472 141 78 0 chr3 86502904 86503301 -141021277 - MSTA LTR MaLR 0 428 1 1075 190 5 46 chr3 86503301 86503400 -141021178 + MER58A DNA MER1_type 105 207 -17 214 313 117 11 chr3 86503423 86503602 -141020976 + L3 LINE CR1 1180 1377 -200 4094 91 14 4 chr3 86503609 86504161 -141020417 + LTR6B LTR ERV1 1 558 0 22366 132 22 3 chr3 86504163 86507335 -141017243 + HERVS71 LTR ERV1 4 3236 -5742 6310 133 18 0 chr3 86507344 86508983 -141015595 + HERVS71 LTR ERV1 4870 6603 -2375 * 6709 145 2 0 chr3 86508980 86509962 -141014616 + HERVS71 LTR ERV1 6803 7786 -1192 2228 117 0 3 chr3 86509959 86510276 -141014302 + HERVS71 LTR ERV1 8594 8909 -69 * 4373 64 2 5 chr3 86510276 86510836 -141013742 + LTR6B LTR ERV1 1 558 0 2194 101 3 0 chr3 86511092 86511389 -141013189 - AluSp SINE Alu -13 300 3 348 261 199 24 chr3 86512010 86512221 -141012357 - MLT1H LTR MaLR 0 595 348 1788 111 174 92 chr3 86512377 86512745 -141011833 - MER4A LTR ERV1 -6 658 261 434 121 0 15 chr3 86512745 86512811 -141011767 - MER4A LTR ERV1 -566 98 34 1762 107 11 26 chr3 86512812 86513083 -141011495 - AluSx SINE Alu -17 295 29 620 65 0 0 chr3 86513083 86513160 -141011418 - AluS SINE Alu -234 78 2 279 139 0 0 chr3 86513161 86513204 -141011374 - MER4A LTR ERV1 -620 44 2 440 246 66 12 chr3 86513204 86513372 -141011206 - MLT1H LTR MaLR -356 193 12 315 0 0 0 chr3 86513372 86513407 -141011171 + (CA)n Simple_repeat Simple_repeat 1 35 0 453 45 0 0 chr3 86513602 86513669 -141010909 + L1HS LINE L1 6089 6155 0 1164 75 0 0 chr3 86513777 86513923 -141010655 - AluSg SINE Alu -15 297 152 802 68 10 0 chr3 86513924 86514027 -141010551 - AluSg SINE Alu -197 113 10 320 285 49 75 chr3 86514227 86514494 -141010084 + MLT1K LTR MaLR 180 439 -149 1905 135 6 10 chr3 86514644 86514955 -141009623 + AluSg SINE Alu 1 310 0 1119 295 15 27 chr3 86514960 86515292 -141009286 + LTR16C LTR ERVL 164 491 0 245 203 63 38 chr3 86515292 86515361 -141009217 + MLT1K LTR MaLR 517 587 -1 2054 118 20 0 chr3 86515783 86516087 -141008491 + AluSx SINE Alu 1 310 -2 642 223 54 24 chr3 86516853 86517019 -141007559 - MLT1I LTR MaLR -7 402 232 254 268 125 27 chr3 86517271 86517383 -141007195 - MIR SINE MIR -137 125 3 322 244 8 59 chr3 86517768 86517887 -141006691 - MER58C DNA MER1_type 0 215 103 1382 205 36 44 chr3 86517898 86518259 -141006319 + L1MB5 LINE L1 5813 6170 -4 1342 191 29 18 chr3 86518272 86518550 -141006028 - AluJo SINE Alu -30 282 2 1905 120 3 42 chr3 86518719 86519028 -141005550 - AluJb SINE Alu -11 301 5 2150 116 0 0 chr3 86519189 86519483 -141005095 - AluSx SINE Alu -18 294 1 583 208 39 0 chr3 86519490 86519620 -141004958 - L1MB4 LINE L1 0 6180 6046 1200 191 25 39 chr3 86520133 86520415 -141004163 - AluJo SINE Alu -34 278 1 1845 162 0 6 chr3 86520440 86520754 -141003824 + AluSx SINE Alu 1 312 0 394 332 65 13 chr3 86520828 86521060 -141003518 + L2 LINE L2 2710 2953 -361 301 249 102 9 chr3 86521213 86521342 -141003236 - L2 LINE L2 -247 3066 2916 43074 58 3 4 chr3 86521449 86527611 -140996967 + L1PA5 LINE L1 1 6154 0 2111 130 0 0 chr3 86528031 86528332 -140996246 + AluSx SINE Alu 1 301 -11 1147 206 28 16 chr3 86528375 86528622 -140995956 - MLT1E1 LTR MaLR 0 654 405 2122 106 0 0 chr3 86528642 86528949 -140995629 + AluSx SINE Alu 1 307 0 1029 191 98 8 chr3 86528979 86529225 -140995353 - MLT1E1 LTR MaLR -384 270 3 2348 76 7 0 chr3 86529511 86529815 -140994763 + AluY SINE Alu 1 306 -5 1547 204 42 73 chr3 86529819 86530207 -140994371 - MLT1C LTR MaLR 0 467 95 2278 103 3 0 chr3 86530207 86530517 -140994061 - AluSp SINE Alu -2 311 1 1547 204 42 73 chr3 86530517 86530608 -140993970 - MLT1C LTR MaLR -372 95 3 357 252 40 6 chr3 86530620 86530708 -140993870 + AluJ/FLAM SINE Alu 1 75 -227 1378 184 31 41 chr3 86530732 86531026 -140993552 + AluJo SINE Alu 6 296 -16 247 294 119 60 chr3 86531307 86531525 -140993053 - MLT1K LTR MaLR -325 263 33 390 277 92 31 chr3 86532317 86532447 -140992131 + MER91C DNA MER1_type 1 138 -2 1232 157 5 22 chr3 86532585 86532808 -140991770 - MER20 DNA MER1_type 0 219 1 1650 174 0 30 chr3 86533208 86533512 -140991066 + AluJo SINE Alu 12 306 -6 1994 126 13 0 chr3 86533516 86533818 -140990760 + AluY SINE Alu 1 306 -5 1089 124 26 31 chr3 86533933 86534127 -140990451 + HERVH LTR ERV1 3801 3993 -3720 4364 153 1 1 chr3 86534129 86534788 -140989790 + HERVH LTR ERV1 4488 5146 -2567 1267 142 42 5 chr3 86534792 86535004 -140989574 + HERVH LTR ERV1 5600 5819 -1894 2259 143 48 13 chr3 86535004 86535381 -140989197 + HERVH LTR ERV1 7324 7713 0 2406 113 125 8 chr3 86535382 86535782 -140988796 + LTR7 LTR ERV1 2 448 -2 2204 100 3 0 chr3 86535794 86536095 -140988483 - AluSp SINE Alu -9 304 3 602 221 55 33 chr3 86536105 86536286 -140988292 - MLT1D LTR MaLR -320 185 1 288 339 25 17 chr3 86537469 86537587 -140986991 - L2 LINE L2 -15 3298 3180 1773 141 6 63 chr3 86537625 86537944 -140986634 + AluSx SINE Alu 1 301 -11 222 37 0 0 chr3 86538229 86538256 -140986322 + (CAT)n Simple_repeat Simple_repeat 3 29 0 753 152 80 8 chr3 86538366 86538491 -140986087 + THE1B LTR MaLR 196 329 -35 199 176 0 0 chr3 86538765 86538799 -140985779 + L2 LINE L2 3019 3052 -261 2271 91 0 3 chr3 86539040 86539347 -140985231 - AluY SINE Alu -4 307 2 450 94 0 0 chr3 86539492 86539556 -140985022 + (GA)n Simple_repeat Simple_repeat 1 64 0 2004 131 3 0 chr3 86539872 86540163 -140984415 - AluSg SINE Alu -18 292 1 1168 167 14 28 chr3 86540228 86540444 -140984134 + MER73 LTR ERVL 432 644 0 196 255 0 0 chr3 86540929 86540980 -140983598 - MER5B DNA MER1_type -81 97 47 932 144 0 0 chr3 86540986 86541118 -140983460 + FLAM_A SINE Alu 1 132 -1 254 200 19 45 chr3 86541175 86541241 -140983337 + MLT1F LTR MaLR 1 55 -487 * 401 216 0 0 chr3 86541240 86541314 -140983264 - MER66B LTR ERV1 -412 74 1 848 154 0 8 chr3 86541675 86541805 -140982773 + FLAM_C SINE Alu 1 129 -4 232 24 49 24 chr3 86541977 86542018 -140982560 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1499 172 29 4 chr3 86542018 86542291 -140982287 - AluSx SINE Alu -32 280 1 427 247 20 99 chr3 86543014 86543138 -140981440 + MER5B DNA MER1_type 3 140 -49 1776 180 0 0 chr3 86543138 86543449 -140981129 - AluJo SINE Alu -1 311 1 427 247 20 99 chr3 86543449 86543496 -140981082 + MER5B DNA MER1_type 140 189 0 357 252 28 22 chr3 86543510 86543659 -140980919 - MER5A DNA MER1_type 0 178 30 211 260 65 65 chr3 86543556 86543679 -140980899 + MER5A DNA MER1_type 60 182 -7 * 1262 227 108 35 chr3 86544067 86544143 -140980435 + MLT1C LTR MaLR 6 75 -392 1938 144 3 0 chr3 86544143 86544435 -140980143 + AluSx SINE Alu 5 297 -15 1262 227 108 35 chr3 86544435 86544786 -140979792 + MLT1C LTR MaLR 75 464 -3 2108 120 0 0 chr3 86544827 86545118 -140979460 + AluSp SINE Alu 1 291 -22 1978 113 6 44 chr3 86545343 86545662 -140978916 + AluSq SINE Alu 1 307 -6 262 246 18 0 chr3 86545843 86545900 -140978678 + AluJo SINE Alu 1 58 -244 3810 133 105 50 chr3 86545932 86546378 -140978200 + LTR1 LTR ERV1 1 506 -279 1799 87 0 4 chr3 86546378 86546608 -140977970 + AluY SINE Alu 16 244 -67 3810 133 105 50 chr3 86546608 86546905 -140977673 + LTR1 LTR ERV1 506 785 0 1375 144 0 88 chr3 86546908 86547192 -140977386 + AluJo SINE Alu 41 299 -13 1677 170 3 16 chr3 86547743 86548049 -140976529 + AluSx SINE Alu 1 302 -10 534 16 0 0 chr3 86548058 86548121 -140976457 + (CA)n Simple_repeat Simple_repeat 2 64 0 1754 196 0 0 chr3 86548239 86548550 -140976028 - AluJo SINE Alu -1 311 1 495 279 82 13 chr3 86549072 86549230 -140975348 + MIR SINE MIR 79 247 -15 352 275 77 0 chr3 86549259 86549350 -140975228 + L2 LINE L2 3162 3259 -13 497 310 24 11 chr3 86549742 86549920 -140974658 + MIR SINE MIR 42 224 -38 2270 101 0 0 chr3 86549935 86550242 -140974336 + AluSq SINE Alu 1 307 -6 3270 125 68 6 chr3 86550330 86550826 -140973752 + MER1A DNA MER1_type 1 527 0 766 191 9 91 chr3 86550846 86550997 -140973581 + MER3 DNA MER1_type 8 137 -72 2064 125 3 0 chr3 86550997 86551293 -140973285 - AluSx SINE Alu -15 297 1 766 191 9 91 chr3 86551293 86551361 -140973217 + MER3 DNA MER1_type 137 209 0 765 265 94 8 chr3 86551510 86551744 -140972834 - MIR SINE MIR -6 256 3 195 100 0 0 chr3 86553743 86553773 -140970805 + (TG)n Simple_repeat Simple_repeat 1 30 0 2199 133 0 3 chr3 86554346 86554655 -140969923 + AluSg SINE Alu 1 308 -2 289 283 50 75 chr3 86554716 86554875 -140969703 - L2 LINE L2 0 3313 3159 1006 219 125 0 chr3 86555034 86555290 -140969288 - LTR16A1 LTR ERVL 0 457 170 419 230 178 0 chr3 86555889 86556024 -140968554 - MIR SINE MIR -73 189 31 1503 174 68 18 chr3 86556029 86556310 -140968268 - AluJo SINE Alu -17 295 1 547 83 0 0 chr3 86556320 86556392 -140968186 - Alu SINE Alu -15 295 224 442 290 21 42 chr3 86556574 86556767 -140967811 - MLT1K LTR MaLR -302 286 98 1002 127 7 0 chr3 86556960 86557102 -140967476 + AluSp/q SINE Alu 159 301 -12 1409 161 24 47 chr3 86557197 86557346 -140967232 + AluJo SINE Alu 1 152 -160 1698 201 0 6 chr3 86557346 86557659 -140966919 + AluJo SINE Alu 1 311 -1 285 29 0 0 chr3 86557659 86557693 -140966885 + (TA)n Simple_repeat Simple_repeat 2 35 0 1409 161 24 47 chr3 86557693 86557796 -140966782 + AluJo SINE Alu 150 248 -64 226 234 0 43 chr3 86557811 86557905 -140966673 + L1MC4 LINE L1 6614 6703 -1339 582 275 38 0 chr3 86557959 86558119 -140966459 + MER104 DNA Tc2 11 176 -4 2331 98 0 0 chr3 86558997 86559284 -140965294 + AluSx SINE Alu 1 287 -25 621 0 0 0 chr3 86559284 86559353 -140965225 + (TATAA)n Simple_repeat Simple_repeat 4 72 0 246 62 0 0 chr3 86559352 86559384 -140965194 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 * 1690 196 3 22 chr3 86559522 86559839 -140964739 + AluJo SINE Alu 1 311 -1 247 310 69 0 chr3 86559908 86559995 -140964583 - MIR SINE MIR -74 188 96 1515 180 0 16 chr3 86560015 86560265 -140964313 + AluJb SINE Alu 1 246 -66 2318 160 48 14 chr3 86560265 86560702 -140963876 + MER66B LTR ERV1 1 452 -34 4054 116 107 111 chr3 86560702 86562103 -140962475 + pTR5 LTR ERV1 589 2438 0 329 152 0 45 chr3 86562122 86562188 -140962390 + AluJb SINE Alu 238 300 -2 2125 161 65 51 chr3 86562321 86562557 -140962021 + L1MB7 LINE L1 5670 5901 -283 351 0 0 0 chr3 86562557 86562596 -140961982 + (TA)n Simple_repeat Simple_repeat 1 39 0 2125 161 65 51 chr3 86562596 86562796 -140961782 + L1MB7 LINE L1 5901 6116 -68 1833 177 0 7 chr3 86562796 86563095 -140961483 - AluJb SINE Alu -15 297 1 2125 161 65 51 chr3 86563095 86563165 -140961413 + L1MB7 LINE L1 6116 6184 0 1643 191 3 43 chr3 86563176 86563311 -140961267 + AluJb SINE Alu 1 140 -172 1760 138 67 27 chr3 86563311 86563608 -140960970 + AluSx SINE Alu 1 309 -3 1643 191 3 43 chr3 86563608 86563796 -140960782 + AluJb SINE Alu 140 311 -1 2329 96 0 16 chr3 86563898 86564211 -140960367 + AluSx SINE Alu 1 308 -4 2148 120 7 10 chr3 86564828 86565129 -140959449 - AluSx SINE Alu -12 300 1 1567 171 49 59 chr3 86565326 86565630 -140958948 + AluJo SINE Alu 1 301 -11 600 251 96 27 chr3 86565790 86566009 -140958569 + MIR SINE MIR 29 262 0 575 160 0 20 chr3 86566234 86566334 -140958244 - AluS SINE Alu -213 99 2 518 188 27 74 chr3 86566338 86566487 -140958091 - MLT1C LTR MaLR -284 183 42 1683 179 36 10 chr3 86566508 86566810 -140957768 - AluJo SINE Alu -2 310 1 2186 111 7 0 chr3 86567470 86567758 -140956820 + AluSc SINE Alu 1 290 -19 2339 89 3 7 chr3 86567852 86568156 -140956422 + AluSq SINE Alu 1 303 -10 340 317 71 33 chr3 86569200 86569383 -140955195 + L2 LINE L2 3121 3310 -3 218 191 12 60 chr3 86569918 86570002 -140954576 + C-rich Low_complexity Low_complexity 6 85 0 214 301 18 36 chr3 86570365 86570531 -140954047 + C-rich Low_complexity Low_complexity 4 166 0 193 125 0 50 chr3 86571542 86571582 -140952996 - MIR SINE MIR -88 174 137 841 229 65 0 chr3 86571611 86571825 -140952753 + MIR SINE MIR 13 240 -22 834 272 89 28 chr3 86571846 86572329 -140952249 - L2 LINE L2 -1 3312 2777 2168 116 3 0 chr3 86573764 86574058 -140950520 + AluSx SINE Alu 1 295 -17 223 292 26 24 chr3 86574163 86574303 -140950275 + L2 LINE L2 2842 2977 -336 398 274 185 10 chr3 86575005 86575319 -140949259 + LTR33A LTR ERVL 139 507 -16 2111 139 10 0 chr3 86575332 86575641 -140948937 - AluSx SINE Alu 0 312 1 641 192 32 8 chr3 86576167 86576292 -140948286 - FLAM_A SINE Alu -5 128 1 294 304 74 63 chr3 86576582 86576736 -140947842 + MIR SINE MIR 26 177 -68 2092 97 52 14 chr3 86576813 86576946 -140947632 + AluSx SINE Alu 1 127 -185 2221 127 0 0 chr3 86576946 86577246 -140947332 + AluSq SINE Alu 1 300 -13 2092 97 52 14 chr3 86577246 86577402 -140947176 + AluSx SINE Alu 127 301 -11 564 268 78 0 chr3 86577473 86577652 -140946926 - L1MD2 LINE L1 -365 5994 5802 182 281 62 16 chr3 86579452 86579516 -140945062 + MIR SINE MIR 81 147 -115 201 336 138 0 chr3 86579670 86579786 -140944792 - MIR SINE MIR -32 230 99 1754 177 3 16 chr3 86580078 86580394 -140944184 + AluJb SINE Alu 1 312 0 2033 145 3 10 chr3 86580499 86580803 -140943775 - AluSx SINE Alu -10 302 1 580 200 9 0 chr3 86580850 86580955 -140943623 + FLAM_A SINE Alu 18 123 -19 1122 110 12 0 chr3 86581034 86581207 -140943371 - MER30 DNA MER1_type -55 175 1 1930 131 13 52 chr3 86581341 86581647 -140942931 + AluSx SINE Alu 5 298 -14 1067 157 58 0 chr3 86581687 86581878 -140942700 + AluJo SINE Alu 106 307 -5 414 0 0 0 chr3 86581940 86581986 -140942592 + (TG)n Simple_repeat Simple_repeat 2 47 0 1625 202 0 3 chr3 86581990 86582272 -140942306 - AluSx SINE Alu -31 281 1 310 301 23 64 chr3 86582283 86582549 -140942029 - L1MC5 LINE L1 -44 7917 7663 397 301 144 0 chr3 86582624 86582777 -140941801 - MER5A DNA MER1_type 0 189 15 618 250 166 9 chr3 86582974 86583039 -140941539 - MLT1D LTR MaLR 0 505 452 1946 164 3 7 chr3 86583039 86583344 -140941234 + AluSx SINE Alu 1 304 -8 618 250 166 9 chr3 86583344 86583516 -140941062 - MLT1D LTR MaLR -53 452 206 1852 95 36 8 chr3 86583558 86583907 -140940671 + LTR7 LTR ERV1 1 448 -2 18871 99 40 21 chr3 86583909 86586845 -140937733 + HERVH LTR ERV1 1 2992 -4721 5699 101 8 2 chr3 86586831 86587680 -140936898 + HERVH LTR ERV1 3140 3993 -3720 * 4226 147 1 1 chr3 86587682 86588341 -140936237 + HERVH LTR ERV1 4488 5146 -2567 1255 123 42 5 chr3 86588345 86588557 -140936021 + HERVH LTR ERV1 5600 5819 -1894 2242 106 48 13 chr3 86588557 86588934 -140935644 + HERVH LTR ERV1 7324 7713 0 2403 92 125 8 chr3 86588935 86589335 -140935243 + LTR7 LTR ERV1 2 448 -2 2353 100 3 0 chr3 86589347 86589648 -140934930 - AluSp SINE Alu -9 304 3 571 221 55 33 chr3 86589658 86589839 -140934739 - MLT1D LTR MaLR -320 185 1 270 339 25 17 chr3 86591023 86591141 -140933437 - L2 LINE L2 -15 3298 3180 1842 151 6 68 chr3 86591179 86591503 -140933075 + AluSx SINE Alu 1 304 -8 222 37 0 0 chr3 86591786 86591813 -140932765 + (CAT)n Simple_repeat Simple_repeat 3 29 0 714 152 80 8 chr3 86591923 86592048 -140932530 + THE1B LTR MaLR 196 329 -35 191 176 0 0 chr3 86592322 86592356 -140932222 + L2 LINE L2 3019 3052 -261 2417 94 0 3 chr3 86592597 86592904 -140931674 - AluY SINE Alu -4 307 2 450 94 0 0 chr3 86593049 86593113 -140931465 + (GA)n Simple_repeat Simple_repeat 1 64 0 2160 131 3 0 chr3 86593429 86593720 -140930858 - AluSg SINE Alu -18 292 1 1129 167 14 28 chr3 86593785 86594001 -140930577 + MER73 LTR ERVL 432 644 0 184 255 0 0 chr3 86594486 86594537 -140930041 - MER5B DNA MER1_type -81 97 47 891 144 0 0 chr3 86594543 86594675 -140929903 + FLAM_A SINE Alu 1 132 -1 243 200 19 45 chr3 86594732 86594798 -140929780 + MLT1F LTR MaLR 1 55 -487 * 391 216 0 0 chr3 86594797 86594871 -140929707 - MER66B LTR ERV1 -412 74 1 822 146 0 8 chr3 86595233 86595363 -140929215 + FLAM_C SINE Alu 1 129 -4 232 24 49 24 chr3 86595535 86595576 -140929002 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1678 161 29 4 chr3 86595576 86595849 -140928729 - AluSx SINE Alu -32 280 1 401 246 20 99 chr3 86596572 86596696 -140927882 + MER5B DNA MER1_type 3 140 -49 1954 177 0 0 chr3 86596696 86597007 -140927571 - AluJo SINE Alu -1 311 1 401 246 20 99 chr3 86597007 86597054 -140927524 + MER5B DNA MER1_type 140 189 0 334 292 15 8 chr3 86597068 86597217 -140927361 - MER5A DNA MER1_type 0 178 30 192 325 32 32 chr3 86597114 86597237 -140927341 + MER5A DNA MER1_type 60 182 -7 * 1215 237 102 35 chr3 86597625 86597701 -140926877 + MLT1C LTR MaLR 6 75 -392 2091 144 3 0 chr3 86597701 86597993 -140926585 + AluSx SINE Alu 5 297 -15 1215 237 102 35 chr3 86597993 86598346 -140926232 + MLT1C LTR MaLR 75 464 -3 2146 134 0 3 chr3 86598387 86598685 -140925893 + AluSp SINE Alu 1 297 -16 2054 115 6 50 chr3 86598904 86599225 -140925353 + AluSq SINE Alu 1 307 -6 251 246 18 0 chr3 86599406 86599463 -140925115 + AluJo SINE Alu 1 58 -244 3602 134 103 48 chr3 86599495 86599941 -140924637 + LTR1 LTR ERV1 1 506 -279 1987 57 0 4 chr3 86599941 86600171 -140924407 + AluY SINE Alu 16 244 -67 3602 134 103 48 chr3 86600171 86600468 -140924110 + LTR1 LTR ERV1 506 785 0 1503 144 0 94 chr3 86600471 86600769 -140923809 + AluJo SINE Alu 41 310 -2 1932 144 3 16 chr3 86601308 86601614 -140922964 + AluSx SINE Alu 1 302 -10 534 16 0 0 chr3 86601623 86601686 -140922892 + (CA)n Simple_repeat Simple_repeat 2 64 0 1881 192 0 3 chr3 86601804 86602116 -140922462 - AluJo SINE Alu -1 311 1 471 279 82 13 chr3 86602639 86602797 -140921781 + MIR SINE MIR 79 247 -15 329 275 77 0 chr3 86602826 86602917 -140921661 + L2 LINE L2 3162 3259 -13 480 307 18 12 chr3 86603324 86603487 -140921091 + MIR SINE MIR 61 224 -38 2411 104 0 0 chr3 86603502 86603809 -140920769 + AluSq SINE Alu 1 307 -6 3099 125 68 6 chr3 86603897 86604393 -140920185 + MER1A DNA MER1_type 1 527 0 712 230 30 20 chr3 86604413 86604544 -140920034 + MER3 DNA MER1_type 8 143 -66 2210 127 3 19 chr3 86604544 86604860 -140919718 - AluSx SINE Alu -1 311 1 712 230 30 20 chr3 86604860 86604928 -140919650 + MER3 DNA MER1_type 143 209 0 693 242 95 0 chr3 86605077 86605267 -140919311 - MIR SINE MIR -6 256 49 195 100 0 0 chr3 86607311 86607341 -140917237 + (TG)n Simple_repeat Simple_repeat 1 30 0 2155 136 0 7 chr3 86607914 86608224 -140916354 + AluSg SINE Alu 1 308 -2 310 277 50 75 chr3 86608285 86608444 -140916134 - L2 LINE L2 0 3313 3159 977 231 125 0 chr3 86608603 86608859 -140915719 - LTR16A1 LTR ERVL 0 457 170 611 304 58 0 chr3 86609171 86609362 -140915216 + AluJo SINE Alu 106 307 -5 423 0 0 0 chr3 86609423 86609470 -140915108 + (TG)n Simple_repeat Simple_repeat 2 48 0 2121 120 3 0 chr3 86609470 86609754 -140914824 - AluSx SINE Alu -27 285 1 826 245 40 0 chr3 86611510 86611710 -140912868 + MER58A DNA MER1_type 1 208 -16 298 104 194 0 chr3 86612940 86613007 -140911571 + MADE1 DNA Mariner 1 80 0 633 125 0 10 chr3 86613542 86613666 -140910912 - AluSg/x SINE Alu 0 310 199 2086 88 4 15 chr3 86613667 86613972 -140910606 + AluSq SINE Alu 16 317 0 1697 159 32 11 chr3 86614051 86614334 -140910244 + AluSx SINE Alu 1 289 -23 1999 140 24 0 chr3 86615612 86615905 -140908673 + AluSx SINE Alu 1 300 -12 188 286 82 10 chr3 86616009 86616107 -140908471 + MIR SINE MIR 106 210 -52 2054 136 3 0 chr3 86616284 86616571 -140908007 - AluSx SINE Alu -14 298 11 243 333 0 0 chr3 86617407 86617476 -140907102 - L2 LINE L2 -52 3261 3193 907 206 72 0 chr3 86617672 86617881 -140906697 - MER58A DNA MER1_type 0 224 1 2510 73 0 0 chr3 86618685 86618986 -140905592 - AluY SINE Alu -10 301 1 2219 120 3 0 chr3 86619489 86619798 -140904780 - AluSx SINE Alu -2 310 1 2061 146 0 3 chr3 86619803 86620112 -140904466 - AluSq SINE Alu -5 308 1 22 0 0 0 chr3 86620116 86620138 -140904440 + AT_rich Low_complexity Low_complexity 1 22 0 882 205 42 69 chr3 86620181 86620513 -140904065 - MER33 DNA MER1_type -1 323 1 2072 144 19 27 chr3 86620950 86621161 -140903417 - THE1B LTR MaLR 0 364 156 1937 172 0 0 chr3 86621161 86621463 -140903115 + AluSx SINE Alu 1 302 -10 2072 144 19 27 chr3 86621463 86621618 -140902960 - THE1B LTR MaLR -208 156 1 253 318 93 13 chr3 86621658 86621809 -140902769 - MIR SINE MIR -92 170 8 396 320 6 26 chr3 86621922 86622078 -140902500 + MER5B DNA MER1_type 17 169 -9 202 339 30 30 chr3 86621930 86622095 -140902483 - MER5A DNA MER1_type -24 165 1 * 2222 230 114 9 chr3 86622116 86622746 -140901832 - L1MD3 LINE L1 0 8025 7353 1951 143 0 33 chr3 86623191 86623498 -140901080 - AluJo SINE Alu -11 301 5 750 215 23 23 chr3 86624173 86624350 -140900228 + MLT1B LTR MaLR 1 177 -213 1095 196 9 31 chr3 86624350 86624575 -140900003 + AluJo SINE Alu 1 220 -92 1995 134 3 7 chr3 86624627 86624934 -140899644 + AluSx SINE Alu 1 306 0 197 227 0 13 chr3 86624936 86625011 -140899567 + (TA)n Simple_repeat Simple_repeat 1 74 0 598 227 31 133 chr3 86625011 86625267 -140899311 + MLT1C LTR MaLR 161 467 0 308 199 27 130 chr3 86625274 86625420 -140899158 - MIR SINE MIR -47 215 85 618 168 23 53 chr3 86625575 86625706 -140898872 - FLAM_A SINE Alu -6 127 1 3979 204 61 38 chr3 86626039 86626410 -140898168 - MER45B DNA AcHobo -541 1040 679 2032 153 0 0 chr3 86626410 86626727 -140897851 - AluSg SINE Alu 0 317 1 3979 204 61 38 chr3 86626727 86627243 -140897335 - MER45B DNA AcHobo -902 679 123 2130 117 0 0 chr3 86627243 86627561 -140897017 + AluSx SINE Alu 1 318 0 3979 204 61 38 chr3 86627561 86627677 -140896901 - MER45B DNA AcHobo -1458 123 11 210 252 71 55 chr3 86627788 86627915 -140896663 + L2 LINE L2 2659 2787 -527 2095 124 37 13 chr3 86628576 86628875 -140895703 + AluSx SINE Alu 1 306 -6 675 302 61 0 chr3 86628875 86629087 -140895491 + MER82 DNA MER2_type 429 653 0 2299 102 0 13 chr3 86629299 86629602 -140894976 + AluSx SINE Alu 1 299 -13 465 264 133 17 chr3 86730342 86730577 -140794001 + MIR SINE MIR 4 262 0 22 35 0 0 chr3 86731007 86731036 -140793542 + AT_rich Low_complexity Low_complexity 1 29 0 659 309 48 5 chr3 86733292 86733499 -140791079 - MIR SINE MIR -2 260 45 540 157 52 7 chr3 86733550 86733775 -140790803 - AluJb SINE Alu -8 304 1 505 264 160 9 chr3 86733968 86734180 -140790398 + MIR SINE MIR 1 244 -18 382 243 27 81 chr3 86734457 86734605 -140789973 - MIR3 SINE MIR -49 159 20 1781 187 3 0 chr3 86736329 86736634 -140787944 + AluJo SINE Alu 1 306 -6 3435 146 19 23 chr3 86737264 86737882 -140786696 + L1MA7 LINE L1 5675 6290 -1 2055 124 3 0 chr3 86737897 86738187 -140786391 - AluSp SINE Alu -22 291 1 261 119 0 0 chr3 86738985 86739027 -140785551 + (TG)n Simple_repeat Simple_repeat 1 42 0 216 0 0 0 chr3 86739026 86739050 -140785528 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 253 226 0 0 chr3 86741832 86741894 -140782684 + T-rich Low_complexity Low_complexity 1 62 0 227 310 0 0 chr3 86741907 86741965 -140782613 + MIR SINE MIR 204 261 -1 1528 211 90 26 chr3 86741972 86742029 -140782549 - MLT1D LTR MaLR 0 505 453 3362 139 9 21 chr3 86742029 86742562 -140782016 - MER1A DNA MER1_type 0 527 1 1528 211 90 26 chr3 86742562 86742892 -140781686 - MLT1D LTR MaLR -52 453 93 1870 206 52 48 chr3 86742899 86743399 -140781179 - MLT1D LTR MaLR -3 502 1 834 279 78 65 chr3 86744419 86744832 -140779746 - LTR16B LTR ERVL -7 457 40 230 308 55 7 chr3 86745083 86745229 -140779349 - L1MC/D LINE L1 -434 5925 5773 193 250 23 0 chr3 86745229 86745273 -140779305 - MIR3 SINE MIR -158 50 6 21 36 0 0 chr3 86748803 86748831 -140775747 + AT_rich Low_complexity Low_complexity 1 28 0 276 30 0 0 chr3 86749802 86749835 -140774743 + (TG)n Simple_repeat Simple_repeat 2 34 0 252 0 0 0 chr3 86749834 86749862 -140774716 + (TA)n Simple_repeat Simple_repeat 1 28 0 * 409 333 57 4 chr3 86751319 86751547 -140773031 + L2 LINE L2 2812 3051 -221 461 200 15 23 chr3 86752111 86752241 -140772337 + L1ME3 LINE L1 6034 6162 0 377 273 60 79 chr3 86752261 86752477 -140772101 + L2 LINE L2 3048 3259 -54 197 294 17 0 chr3 86752623 86752742 -140771836 + GA-rich Low_complexity Low_complexity 3 123 0 208 301 32 11 chr3 86752915 86753008 -140771570 + CT-rich Low_complexity Low_complexity 2 96 0 1658 128 4 4 chr3 86753101 86753343 -140771235 + AluSx SINE Alu 3 244 -68 998 116 0 19 chr3 86753348 86753503 -140771075 + AluSg/x SINE Alu 159 310 -2 792 193 78 18 chr3 86754782 86754948 -140769630 + MER45A DNA AcHobo 1 176 -2 1850 113 0 0 chr3 86755683 86755931 -140768647 + AluSx SINE Alu 49 296 -16 628 285 140 0 chr3 86758529 86758757 -140765821 - MIR SINE MIR -1 261 2 1350 287 40 19 chr3 86758902 86759432 -140765146 + L1ME3A LINE L1 5610 6150 -20 201 167 0 0 chr3 86761886 86761895 -140762683 + (CA)n Simple_repeat Simple_repeat 2 10 -33 192 40 0 0 chr3 86761895 86761920 -140762658 + (TC)n Simple_repeat Simple_repeat 1 25 0 201 167 0 0 chr3 86761920 86761952 -140762626 + (CA)n Simple_repeat Simple_repeat 9 43 0 504 331 72 0 chr3 86762529 86762710 -140761868 + MIR SINE MIR 44 237 -25 228 388 0 0 chr3 86763251 86763336 -140761242 - L2 LINE L2 -6 3307 3223 406 302 158 0 chr3 86763398 86763537 -140761041 + MIR SINE MIR 2 162 -100 254 283 58 92 chr3 86763679 86763815 -140760763 - L2 LINE L2 -491 2823 2696 1362 173 34 68 chr3 86763815 86764144 -140760434 + AluJb SINE Alu 1 319 0 254 283 58 92 chr3 86764144 86764246 -140760332 - L2 LINE L2 -618 2696 2592 180 375 55 16 chr3 86765181 86765309 -140759269 - MIR SINE MIR -17 245 113 453 273 86 34 chr3 86765475 86765801 -140758777 + L1ME3A LINE L1 5574 5916 -205 1994 147 0 0 chr3 86768564 86768856 -140755722 - AluSg SINE Alu -18 292 1 580 320 115 50 chr3 86769342 86769786 -140754792 - L2 LINE L2 -4 3309 2837 355 295 98 23 chr3 86770994 86771167 -140753411 - MER117 DNA MER1_type -8 189 4 1549 230 91 104 chr3 86771171 86771540 -140753038 + L1ME3A LINE L1 5335 5707 -463 2126 141 31 3 chr3 86771540 86771894 -140752684 + THE1B LTR MaLR 1 364 0 1549 230 91 104 chr3 86771894 86772350 -140752228 + L1ME3A LINE L1 5707 6149 -21 2855 3 0 0 chr3 86773019 86773327 -140751251 + AluYa5 SINE Alu 1 308 -3 44 35 0 0 chr3 86774033 86774091 -140750487 + AT_rich Low_complexity Low_complexity 1 58 0 1447 163 44 72 chr3 86774797 86775117 -140749461 - AluJo SINE Alu -1 311 1 377 287 20 20 chr3 86776221 86776322 -140748256 + MER5A DNA MER1_type 9 109 -80 368 320 87 41 chr3 86776920 86777139 -140747439 + L1ME3A LINE L1 5934 6162 -8 223 269 231 27 chr3 86777421 86777607 -140746971 + MIR SINE MIR 2 225 -37 259 230 46 23 chr3 86777928 86778015 -140746563 + L1MC5 LINE L1 7816 7904 -57 369 255 64 42 chr3 86778188 86778404 -140746174 - L1MC/D LINE L1 -799 5347 5236 36 53 0 0 chr3 86778569 86778626 -140745952 + AT_rich Low_complexity Low_complexity 1 57 0 2442 119 11 3 chr3 86779167 86779528 -140745050 - THE1B LTR MaLR 0 364 1 2123 112 0 36 chr3 86780312 86780616 -140743962 - AluSg SINE Alu -17 293 1 191 327 97 26 chr3 86781127 86781240 -140743338 + L2 LINE L2 2233 2353 -961 1656 197 77 3 chr3 86781393 86781733 -140742845 - MLT1A1 LTR MaLR 0 365 1 2225 93 13 22 chr3 86781822 86782135 -140742443 - AluY SINE Alu 0 311 2 2217 259 28 24 chr3 86782840 86783522 -140741056 + MER76 LTR ERV 4 688 0 1127 273 108 24 chr3 86783534 86783999 -140740579 + MLT1J LTR MaLR 5 508 -3 2205 149 36 72 chr3 86784572 86784929 -140739649 + MSTA LTR MaLR 1 340 -88 474 61 0 0 chr3 86784929 86784995 -140739583 - L1PA6 LINE L1 0 6154 6089 2205 149 36 72 chr3 86784995 86785081 -140739497 + MSTA LTR MaLR 340 428 0 2435 52 0 49 chr3 86785901 86786227 -140738351 - AluY SINE Alu -1 310 1 615 224 112 29 chr3 86786923 86787093 -140737485 - MER5A DNA MER1_type 0 189 6 1785 142 24 30 chr3 86787478 86787774 -140736804 - AluSx SINE Alu -18 294 1 226 261 185 11 chr3 86788514 86788606 -140735972 - L2 LINE L2 0 3313 3206 652 329 121 24 chr3 86788681 86789276 -140735302 - L2 LINE L2 -353 2961 2262 2800 87 3 11 chr3 86790232 86790610 -140733968 - THE1C LTR MaLR 0 375 1 9983 112 33 36 chr3 86790610 86792177 -140732401 - THE1C-int LTR MaLR 0 1580 19 2613 104 0 29 chr3 86792188 86792574 -140732004 - THE1C LTR MaLR 0 375 1 1785 187 24 6 chr3 86792582 86792919 -140731659 - MER2 DNA MER2_type -1 343 1 330 152 33 0 chr3 86792994 86793086 -140731492 + (TA)n Simple_repeat Simple_repeat 2 96 0 216 313 24 24 chr3 86793140 86793223 -140731355 - MIR SINE MIR -168 94 12 21 0 0 0 chr3 86794213 86794234 -140730344 + AT_rich Low_complexity Low_complexity 1 21 0 1910 31 4 50 chr3 86794613 86794872 -140729706 - L1PA5 LINE L1 -8 6146 5900 443 324 41 97 chr3 86796388 86796895 -140727683 - L1MEd LINE L1 -5343 776 298 329 26 0 0 chr3 86797154 86797192 -140727386 + THE1B LTR MaLR 1 38 -326 2405 120 23 0 chr3 86797192 86797534 -140727044 + THE1B LTR MaLR 15 364 0 181 267 0 100 chr3 86798655 86798715 -140725863 + L2 LINE L2 3256 3309 -4 382 263 53 26 chr3 86799163 86799277 -140725301 + L2 LINE L2 3197 3313 0 26 0 0 0 chr3 86799422 86799448 -140725130 + AT_rich Low_complexity Low_complexity 1 26 0 2001 132 25 0 chr3 86799522 86799802 -140724776 - AluSg SINE Alu -23 287 1 2310 108 0 0 chr3 86799811 86800108 -140724470 - AluSg SINE Alu -13 297 1 21 57 0 0 chr3 86800115 86800150 -140724428 + AT_rich Low_complexity Low_complexity 1 35 0 2096 131 7 0 chr3 86800521 86800826 -140723752 + AluSg SINE Alu 1 307 -3 312 276 118 16 chr3 86800886 86801013 -140723565 - MIR3 SINE MIR -21 187 48 329 314 70 19 chr3 86801312 86801468 -140723110 + L1MC/D LINE L1 5534 5697 -424 1626 133 121 3 chr3 86801790 86802113 -140722465 - MER46B DNA MER2_type 0 236 1 988 180 73 0 chr3 86802922 86803100 -140721478 - MER58A DNA MER1_type 0 224 34 1100 133 0 0 chr3 86804030 86804188 -140720390 - THE1C LTR MaLR 0 375 218 781 109 0 0 chr3 86804185 86804295 -140720283 - THE1C LTR MaLR -265 110 1 * 23 86 0 0 chr3 86804538 86804596 -140719982 + AT_rich Low_complexity Low_complexity 1 58 0 487 180 0 30 chr3 86804943 86805043 -140719535 - MER39 LTR ERV1 0 707 611 202 97 32 0 chr3 86805044 86805075 -140719503 + GA-rich Low_complexity Low_complexity 1 32 0 360 304 104 36 chr3 86805120 86805340 -140719238 + L2 LINE L2 3079 3313 0 1754 171 10 7 chr3 86805448 86805746 -140718832 - AluJb SINE Alu -13 299 1 330 313 46 0 chr3 86806078 86806209 -140718369 - MIR SINE MIR -2 260 124 282 291 40 73 chr3 86806512 86806663 -140717915 - L2 LINE L2 0 3313 3168 1692 186 27 0 chr3 86808195 86808490 -140716088 - AluJo SINE Alu -9 303 1 2060 214 74 40 chr3 86808610 86809233 -140715345 - LTR48B LTR ERV1 0 644 1 591 260 104 60 chr3 86809834 86810084 -140714494 - MLT1H1 LTR MaLR -294 261 1 226 161 0 161 chr3 86810625 86810712 -140713866 - L1ME4a LINE L1 -88 6033 5961 253 304 14 7 chr3 86810811 86810949 -140713629 - L1ME4a LINE L1 -1988 5820 5682 1587 151 17 17 chr3 86811536 86811827 -140712751 + L1MA7 LINE L1 5999 6289 -2 1942 134 20 0 chr3 86812678 86812976 -140711602 + AluSx SINE Alu 1 304 -8 192 221 29 44 chr3 86812996 86813064 -140711514 - MIR SINE MIR -19 243 177 180 0 0 0 chr3 86813115 86813135 -140711443 + (GA)n Simple_repeat Simple_repeat 2 21 0 274 311 85 0 chr3 86813136 86813242 -140711336 - MIR SINE MIR -77 185 71 2366 99 0 3 chr3 86813286 86813598 -140710980 - AluSq SINE Alu -2 311 1 231 167 0 0 chr3 86814955 86814997 -140709581 + (CA)n Simple_repeat Simple_repeat 1 42 0 1817 172 0 0 chr3 86815005 86815284 -140709294 - AluJb SINE Alu -24 288 10 188 114 23 45 chr3 86815350 86815394 -140709184 + L2 LINE L2 3189 3231 -82 473 337 31 5 chr3 86815548 86815741 -140708837 - MIR SINE MIR -16 246 49 29 70 0 0 chr3 86816908 86816965 -140707613 + AT_rich Low_complexity Low_complexity 1 57 0 396 325 45 7 chr3 86817196 86817350 -140707228 + MIR SINE MIR 21 180 -82 714 188 0 8 chr3 86817356 86817484 -140707094 - FLAM_C SINE Alu -12 131 5 199 259 173 0 chr3 86817498 86817579 -140706999 + MIR SINE MIR 168 262 0 373 336 22 0 chr3 86817898 86818035 -140706543 - MIR SINE MIR -87 175 36 23 33 0 0 chr3 86819772 86819802 -140704776 + AT_rich Low_complexity Low_complexity 1 30 0 292 280 52 18 chr3 86820012 86820141 -140704437 - MIR SINE MIR -58 150 34 478 170 10 40 chr3 86820820 86820920 -140703658 + MLT1A1 LTR MaLR 1 97 -277 * 709 135 15 45 chr3 86820918 86821051 -140703527 + MLT1A1 LTR MaLR 237 365 0 190 226 202 0 chr3 86822950 86823034 -140701544 + L2 LINE L2 3108 3208 -105 518 107 12 0 chr3 86823836 86823920 -140700658 + L1PA15 LINE L1 6076 6160 -5 255 133 0 0 chr3 86825305 86825350 -140699228 + (A)n Simple_repeat Simple_repeat 1 45 0 182 354 51 0 chr3 86825702 86825781 -140698797 - MIR SINE MIR -2 260 178 2115 170 17 7 chr3 86825883 86826295 -140698283 + L1MB2 LINE L1 5752 6167 -4 746 290 16 63 chr3 86826505 86826822 -140697756 + MLT1I LTR MaLR 101 402 -7 301 150 34 17 chr3 86827430 86827511 -140697067 + L1ME4a LINE L1 5727 5808 -356 416 191 85 21 chr3 86827582 86827723 -140696855 + L1ME4a LINE L1 5961 6110 -11 1518 101 55 0 chr3 86828346 86828564 -140696014 + MER30 DNA MER1_type 1 230 0 472 228 97 79 chr3 86828947 86829338 -140695240 - MER113 DNA MER1_type? -119 402 5 14341 198 24 7 chr3 86829554 86835659 -140688919 + L1PB1 LINE L1 7 6500 -367 201 74 0 0 chr3 86835659 86835686 -140688892 + (CATATA)n Simple_repeat Simple_repeat 2 28 0 14341 198 24 7 chr3 86835686 86836053 -140688525 + L1PB1 LINE L1 6500 6859 -8 2261 94 39 19 chr3 86836066 86836427 -140688151 + L1MA1 LINE L1 5935 6302 0 359 307 114 50 chr3 86836639 86836919 -140687659 + MLT1K LTR MaLR 131 428 -160 1021 280 166 50 chr3 86836922 86837581 -140686997 - L2 LINE L2 -9 3304 2513 1724 158 6 58 chr3 86837581 86837910 -140686668 - AluJb SINE Alu 0 312 1 1021 280 166 50 chr3 86837910 86838129 -140686449 - L2 LINE L2 -800 2513 2321 406 345 41 0 chr3 86838724 86838869 -140685709 - L2 LINE L2 -1 3271 3121 30 27 0 0 chr3 86839066 86839103 -140685475 + AT_rich Low_complexity Low_complexity 1 37 0 182 268 124 52 chr3 86839137 86839234 -140685344 - L3 LINE CR1 -29 1548 1445 504 276 165 14 chr3 86839404 86839649 -140684929 + MIR SINE MIR 1 262 0 23 54 0 0 chr3 86840591 86840628 -140683950 + AT_rich Low_complexity Low_complexity 1 37 0 449 329 0 7 chr3 86840657 86840794 -140683784 + MIR SINE MIR 83 218 -44 359 241 184 32 chr3 86841850 86842008 -140682570 - L2 LINE L2 -4 3309 3128 441 0 0 0 chr3 86842053 86842102 -140682476 + (TA)n Simple_repeat Simple_repeat 1 49 0 417 226 162 53 chr3 86842494 86842999 -140681579 + L1MEd LINE L1 703 1299 -4910 259 281 73 10 chr3 86843227 86843323 -140681255 + L2 LINE L2 3171 3272 0 858 276 57 35 chr3 86843873 86844188 -140680390 + LTR33 LTR ERVL 26 347 -174 2278 122 0 0 chr3 86844409 86844721 -140679857 - AluSx SINE Alu 0 312 1 408 244 165 0 chr3 86845913 86846028 -140678550 - MIR SINE MIR -66 196 63 418 303 8 17 chr3 86846038 86846157 -140678421 - L2 LINE L2 -2 3311 3194 1873 191 9 3 chr3 86846359 86846704 -140677874 - MER7A DNA MER2_type 0 346 2 1480 75 0 0 chr3 86846949 86847136 -140677442 - AluY SINE Alu -7 304 118 5172 52 0 2 chr3 86847163 86847798 -140676780 - L1PA5 LINE L1 -1 6153 5520 1088 68 8 0 chr3 86847808 86847940 -140676638 - AluY SINE Alu -177 134 2 2200 94 0 7 chr3 86848545 86848859 -140675719 + AluSp SINE Alu 1 312 0 649 270 52 9 chr3 86848861 86849072 -140675506 - MIR SINE MIR -35 227 8 284 391 14 7 chr3 86849396 86849534 -140675044 - MER5A DNA MER1_type -50 139 1 231 224 45 30 chr3 86849584 86849651 -140674927 - MLT1L LTR MaLR -12 603 536 1819 183 0 0 chr3 86849748 86850037 -140674541 - AluJb SINE Alu -23 289 1 383 261 241 25 chr3 86852922 86853125 -140671453 + MIR SINE MIR 10 256 -6 2590 116 65 23 chr3 86853581 86854012 -140670566 - MER4C LTR ERV1 -15 450 2 2101 103 38 7 chr3 86854877 86855169 -140669409 + AluSg SINE Alu 1 301 -9 1837 151 7 4 chr3 86855208 86855486 -140669092 + AluSx SINE Alu 22 300 -12 355 277 134 21 chr3 86855761 86855929 -140668649 + MIR SINE MIR 61 260 -2 279 205 8 16 chr3 86855937 86856064 -140668514 + (CCA)n Simple_repeat Simple_repeat 2 127 0 24 0 0 0 chr3 86856274 86856298 -140668280 + AT_rich Low_complexity Low_complexity 1 24 0 202 254 17 0 chr3 86856317 86856376 -140668202 + (TA)n Simple_repeat Simple_repeat 2 61 0 343 280 51 8 chr3 86856713 86856831 -140667747 + L2 LINE L2 3191 3313 0 1999 125 3 21 chr3 86859673 86859960 -140664618 + AluSx SINE Alu 1 282 -30 1428 252 60 7 chr3 86861496 86861913 -140662665 + L1ME3A LINE L1 5464 5902 -268 502 255 37 21 chr3 86861935 86862123 -140662455 + L1ME3A LINE L1 5963 6153 -17 21 57 0 0 chr3 86862244 86862279 -140662299 + AT_rich Low_complexity Low_complexity 1 35 0 408 342 119 55 chr3 86863060 86863463 -140661115 - L2 LINE L2 -2 3270 2842 754 228 72 83 chr3 86864975 86865345 -140659233 + MER113 DNA MER1_type? 1 368 -153 1646 154 0 0 chr3 86865345 86865623 -140658955 - AluSx SINE Alu 0 322 45 754 228 72 83 chr3 86865623 86865708 -140658870 + MER113 DNA MER1_type? 368 452 -69 375 258 138 57 chr3 86865765 86865924 -140658654 + MER5B DNA MER1_type 1 172 -6 1701 292 93 9 chr3 86866566 86867114 -140657464 - MLT1G1 LTR MaLR -1 594 1 404 307 112 0 chr3 86867115 86867294 -140657284 + LTR33 LTR ERVL 24 222 -299 238 100 0 0 chr3 86867901 86867951 -140656627 + L1M LINE L1 5275 5327 -819 6585 183 41 38 chr3 86867961 86868434 -140656144 + L1MCa LINE L1 20 490 -5936 2567 55 0 10 chr3 86868434 86868744 -140655834 + AluY SINE Alu 1 307 -4 6585 183 41 38 chr3 86868744 86869760 -140654818 + L1MCa LINE L1 490 1514 -4912 1634 175 169 43 chr3 86869778 86870286 -140654292 - LTR49 LTR ERV1 -23 572 1 642 224 8 8 chr3 86870289 86870423 -140654155 - MLT1A1 LTR MaLR -231 134 1 2509 255 29 17 chr3 86870433 86871100 -140653478 + L1MCa LINE L1 2322 2959 -3467 3710 164 5 6 chr3 86871100 86871736 -140652842 + MER41B LTR ERV1 1 635 0 2509 255 29 17 chr3 86871736 86871994 -140652584 + L1MCa LINE L1 2959 3212 -3214 3541 159 21 30 chr3 86871994 86872937 -140651641 + L1PA16 LINE L1 4912 5832 -334 2140 64 0 11 chr3 86872939 86873205 -140651373 + AluY SINE Alu 34 296 -15 15641 44 2 12 chr3 86873205 86875190 -140649388 - L1P LINE L1 -3602 2544 579 7957 41 44 1 chr3 86875192 86876903 -140647675 + L1PA4 LINE L1 4405 6152 -3 313 336 80 16 chr3 86877085 86877210 -140647368 + L2 LINE L2 3132 3264 -8 1812 156 44 6 chr3 86877218 86877558 -140647020 + L1PA16 LINE L1 5814 6166 0 1655 261 44 7 chr3 86877602 86878212 -140646366 + L1MCa LINE L1 3195 3827 -2599 1596 134 67 0 chr3 86878212 86878451 -140646127 + AluSx SINE Alu 47 301 -11 6252 159 14 4 chr3 86878455 86879586 -140644992 + L1MC1 LINE L1 5186 6328 -5 1176 242 7 20 chr3 86879588 86879894 -140644684 + L1MB8 LINE L1 5877 6178 0 1693 124 102 0 chr3 86880470 86880744 -140643834 - AluSg SINE Alu -8 302 1 445 133 22 11 chr3 86881246 86881336 -140643242 + L1MA5 LINE L1 6210 6300 0 318 333 31 22 chr3 86881664 86881889 -140642689 + L1MC/D LINE L1 5359 5585 -2223 256 309 147 0 chr3 86881952 86882088 -140642490 - MIR SINE MIR -80 182 27 1205 135 42 54 chr3 86882594 86882854 -140641724 - L1MA5 LINE L1 -3 6297 6041 466 320 80 60 chr3 86883188 86883380 -140641198 - L1M4 LINE L1 -2156 3990 3803 2134 120 10 0 chr3 86883380 86883688 -140640890 - AluSq SINE Alu 0 313 3 466 320 80 60 chr3 86883688 86884321 -140640257 - L1M4 LINE L1 -2343 3803 3149 6834 141 33 15 chr3 86886252 86886338 -140638240 + Tigger3b DNA MER2_type 1 84 -2944 2081 136 0 0 chr3 86886338 86886633 -140637945 + AluSx SINE Alu 3 297 -15 6834 141 33 15 chr3 86886633 86887755 -140636823 + Tigger3b DNA MER2_type 84 1231 0 1674 187 59 82 chr3 86889519 86889996 -140634582 - MLT1C LTR MaLR 0 467 2 360 297 68 12 chr3 86890401 86890580 -140633998 + MIR SINE MIR 3 187 -62 496 285 82 5 chr3 86891757 86891964 -140632614 + L2 LINE L2 1706 1928 -1386 230 287 53 11 chr3 86891971 86892065 -140632513 + L2 LINE L2 2716 2813 -501 339 314 144 45 chr3 86892067 86892379 -140632199 + L2 LINE L2 2971 3313 0 21 0 0 0 chr3 86892508 86892529 -140632049 + AT_rich Low_complexity Low_complexity 1 21 0 372 306 48 52 chr3 86893539 86893670 -140630908 - L2 LINE L2 -4 3309 3179 2073 144 39 31 chr3 86893670 86894030 -140630548 - THE1B LTR MaLR -1 363 1 372 306 48 52 chr3 86894030 86894208 -140630370 - L2 LINE L2 -134 3179 3001 387 311 0 0 chr3 86894631 86894792 -140629786 + (TA)n Simple_repeat Simple_repeat 2 162 0 536 284 30 41 chr3 86895803 86896000 -140628578 + L2 LINE L2 3119 3313 0 450 0 0 0 chr3 86896155 86896205 -140628373 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 893 218 102 41 chr3 86896206 86896472 -140628106 - MER2 DNA MER2_type -4 341 60 639 273 91 0 chr3 86899983 86900148 -140624430 - MER5A DNA MER1_type -2 187 8 2065 69 20 101 chr3 86900676 86901022 -140623556 - AluYb8 SINE Alu 0 318 1 228 35 0 0 chr3 86901131 86901160 -140623418 + (CA)n Simple_repeat Simple_repeat 2 30 0 195 330 160 0 chr3 86902145 86902251 -140622327 - L2 LINE L2 0 3313 3191 21 0 0 0 chr3 86902648 86902669 -140621909 + AT_rich Low_complexity Low_complexity 1 21 0 561 15 0 0 chr3 86902996 86903062 -140621516 + (TCCA)n Simple_repeat Simple_repeat 1 66 0 1490 192 8 4 chr3 86903531 86903792 -140620786 - AluJo SINE Alu -39 273 12 400 289 122 0 chr3 86903840 86903996 -140620582 + L2 LINE L2 3113 3287 -26 732 256 154 67 chr3 86903996 86904077 -140620501 + MLT1G LTR MaLR 6 78 -512 2752 149 60 19 chr3 86904077 86904615 -140619963 + L1MA9 LINE L1 5747 6306 -6 732 256 154 67 chr3 86904615 86905060 -140619518 + MLT1G LTR MaLR 78 553 -37 1732 171 0 26 chr3 86905060 86905365 -140619213 + AluJo SINE Alu 1 297 -15 732 256 154 67 chr3 86905365 86905407 -140619171 + MLT1G LTR MaLR 553 590 0 340 351 42 24 chr3 86905613 86905778 -140618800 - L2 LINE L2 -194 3078 2911 4356 172 6 11 chr3 86906548 86907386 -140617192 + L1PA16 LINE L1 5353 6186 0 337 301 53 8 chr3 86907683 86907816 -140616762 - MIR SINE MIR -117 145 7 456 217 25 8 chr3 86908665 86908785 -140615793 - MER94 DNA DNA -12 122 1 189 307 67 27 chr3 86908839 86908914 -140615664 + L2 LINE L2 3153 3230 -42 2559 31 0 0 chr3 86909737 86910028 -140614550 + AluY SINE Alu 1 291 -20 26 0 0 0 chr3 86910028 86910054 -140614524 + AT_rich Low_complexity Low_complexity 1 26 0 735 254 27 15 chr3 86910054 86910314 -140614264 - L1ME1 LINE L1 -8 6158 5896 907 336 67 47 chr3 86911207 86911711 -140612867 + L2 LINE L2 2174 2667 -605 1950 146 0 0 chr3 86911711 86912017 -140612561 - AluSx SINE Alu 0 306 1 907 336 67 47 chr3 86912017 86912241 -140612337 + L2 LINE L2 2667 2885 -387 1618 198 96 0 chr3 86912241 86912574 -140612004 + MLT1A1 LTR MaLR 1 365 0 907 336 67 47 chr3 86912574 86912890 -140611688 + L2 LINE L2 2885 3247 -25 2282 81 0 10 chr3 86913192 86913488 -140611090 - AluY SINE Alu -18 293 1 2168 107 3 7 chr3 86913554 86913845 -140610733 - AluSp SINE Alu -23 290 1 657 293 54 63 chr3 86914641 86914844 -140609734 + MLT1J LTR MaLR 36 239 -272 219 103 0 0 chr3 86914844 86914883 -140609695 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 3581 17 0 0 chr3 86914883 86915291 -140609287 - L1PA2 LINE L1 -11 6144 5737 657 293 54 63 chr3 86915291 86915420 -140609158 + MLT1J LTR MaLR 237 366 -145 245 311 44 11 chr3 86915611 86915701 -140608877 - MIR SINE MIR -85 177 85 201 288 252 27 chr3 86916629 86916740 -140607838 + MIR SINE MIR 5 140 -122 1296 183 39 150 chr3 86916771 86917339 -140607239 - MLT1D LTR MaLR 0 505 1 30 27 0 0 chr3 86917381 86917418 -140607160 + AT_rich Low_complexity Low_complexity 1 37 0 762 267 72 21 chr3 86917428 86917664 -140606914 - MIR SINE MIR 0 262 15 324 279 29 39 chr3 86918602 86918706 -140605872 + L2 LINE L2 3156 3258 -14 840 199 35 66 chr3 86919562 86919788 -140604790 - MER20 DNA MER1_type 0 219 1 300 262 123 71 chr3 86920970 86921222 -140603356 + MLT1L LTR MaLR 5 269 -346 1103 292 45 12 chr3 87023408 87023809 -140500769 + LTR16A LTR ERVL 31 444 -6 457 324 84 36 chr3 87023973 87024134 -140500444 + MIR SINE MIR 1 181 -81 1879 159 3 7 chr3 87024134 87024461 -140500117 + AluSx SINE Alu 1 326 0 457 324 84 36 chr3 87024461 87024548 -140500030 + MIR SINE MIR 181 262 0 305 348 74 40 chr3 87024547 87024735 -140499843 + MIR3 SINE MIR 7 201 -7 * 504 318 60 39 chr3 87025536 87025769 -140498809 + MIR SINE MIR 24 261 -1 27 0 0 0 chr3 87025880 87025907 -140498671 + AT_rich Low_complexity Low_complexity 1 27 0 470 323 119 43 chr3 87025964 87026030 -140498548 + L2 LINE L2 2531 2591 -722 4992 43 0 3 chr3 87026030 87026634 -140497944 + L1PA5 LINE L1 5550 6151 -3 470 323 119 43 chr3 87026634 87027287 -140497291 + L2 LINE L2 2591 3313 0 24 0 0 0 chr3 87027349 87027373 -140497205 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 87028882 87028910 -140495668 + AT_rich Low_complexity Low_complexity 1 28 0 525 291 38 0 chr3 87029039 87029197 -140495381 + LTR67 LTR ERVL 101 264 -293 250 312 133 68 chr3 87029396 87029996 -140494582 - L2 LINE L2 0 3272 2608 242 333 12 0 chr3 87029994 87030075 -140494503 - L2 LINE L2 -3 3310 3229 * 394 229 92 38 chr3 87030175 87030306 -140494272 + LTR67 LTR ERVL 409 546 -11 228 253 127 74 chr3 87030417 87030556 -140494022 - MLT1J2 LTR MaLR -139 311 154 2529 185 29 0 chr3 87030556 87031047 -140493531 - MLT1D LTR MaLR 0 505 1 228 253 127 74 chr3 87031047 87031136 -140493442 - MLT1J2 LTR MaLR -296 154 71 2439 102 37 6 chr3 87031255 87031608 -140492970 + THE1B LTR MaLR 1 364 0 1125 256 72 48 chr3 87031631 87031784 -140492794 - LTR33 LTR ERVL -50 471 323 1369 235 46 20 chr3 87031784 87032239 -140492339 - MLT1C LTR MaLR 0 467 1 1125 256 72 48 chr3 87032239 87032499 -140492079 - LTR33 LTR ERVL -198 323 48 1623 192 6 50 chr3 87032586 87032903 -140491675 - AluJb SINE Alu -9 303 1 362 288 48 0 chr3 87034707 87034832 -140489746 + LTR16A1 LTR ERVL 147 277 -180 1245 216 36 10 chr3 87035084 87035464 -140489114 - MLT1E1 LTR MaLR 0 654 199 403 224 46 53 chr3 87035557 87035709 -140488869 - MLT1E1 LTR MaLR -503 151 1 357 284 71 24 chr3 87036457 87036626 -140487952 - MER112 DNA MER1_type -82 178 2 347 262 40 40 chr3 87036715 87036841 -140487737 - MER5B DNA MER1_type 0 178 53 527 295 62 10 chr3 87036868 87037076 -140487502 + MIR SINE MIR 45 262 0 553 294 71 55 chr3 87037526 87037979 -140486599 + L1MC4a LINE L1 5440 5899 -1909 4300 163 40 17 chr3 87038789 87039888 -140484690 + L1MB7 LINE L1 5023 6148 -36 1835 182 0 3 chr3 87040365 87040661 -140483917 - AluJb SINE Alu -9 303 9 2271 108 0 0 chr3 87040706 87040994 -140483584 - AluSg SINE Alu -22 288 1 495 0 0 0 chr3 87041051 87041106 -140483472 + (CA)n Simple_repeat Simple_repeat 2 56 0 209 217 22 0 chr3 87041590 87041636 -140482942 + CT-rich Low_complexity Low_complexity 2 48 0 233 293 17 0 chr3 87043323 87043381 -140481197 + L2 LINE L2 3255 3313 0 3005 254 74 42 chr3 87044341 87046229 -140478349 + L1ME2 LINE L1 2199 4106 -2109 1241 190 8 43 chr3 87046229 87046482 -140478096 - AluJo SINE Alu -67 245 2 2030 271 68 28 chr3 87046485 87047586 -140476992 + L1ME2 LINE L1 4097 5307 -947 2244 96 0 0 chr3 87047586 87047877 -140476701 + AluY SINE Alu 1 291 -20 2030 271 68 28 chr3 87047877 87048385 -140476193 + L1ME2 LINE L1 5307 5793 -461 587 255 5 27 chr3 87048506 87048690 -140475888 - MER74B LTR ERVL -234 388 209 895 272 20 49 chr3 87048760 87049205 -140475373 + L1ME2 LINE L1 5802 6233 0 256 266 5 118 chr3 87049327 87049493 -140475085 + MIR SINE MIR 13 148 -60 1057 187 24 21 chr3 87049779 87050142 -140474436 + MSTB LTR MaLR 1 426 0 461 290 59 24 chr3 87050161 87050330 -140474248 - MIR SINE MIR -34 228 54 387 241 163 12 chr3 87050333 87050499 -140474079 - MLT1L LTR MaLR -145 470 280 661 252 52 24 chr3 87051973 87052183 -140472395 + MIR SINE MIR 21 236 -26 4340 28 22 0 chr3 87053135 87053678 -140470900 - L1PA3 LINE L1 -1877 4269 3715 9494 26 0 1 chr3 87053678 87055577 -140469001 + L1PA3 LINE L1 4255 6153 -2 26 0 0 0 chr3 87055578 87055604 -140468974 + AT_rich Low_complexity Low_complexity 1 26 0 264 156 0 0 chr3 87055699 87055744 -140468834 + MLT1K LTR MaLR 528 572 -16 361 221 29 10 chr3 87055996 87056100 -140468478 + MER20B DNA MER1_type 40 145 -638 296 345 15 15 chr3 87056200 87056400 -140468178 + MER20B DNA MER1_type 328 527 -256 583 258 27 4 chr3 87056503 87056728 -140467850 + MER20B DNA MER1_type 516 745 -38 26 0 0 0 chr3 87056843 87056869 -140467709 + AT_rich Low_complexity Low_complexity 1 26 0 240 35 0 0 chr3 87057932 87057961 -140466617 + (CA)n Simple_repeat Simple_repeat 2 30 0 268 213 66 0 chr3 87059101 87059162 -140465416 - MIR SINE MIR -121 141 77 219 69 0 0 chr3 87059719 87059748 -140464830 + (T)n Simple_repeat Simple_repeat 1 29 0 7422 33 9 0 chr3 87059752 87060942 -140463636 - L1PA3 LINE L1 0 6155 4963 9407 33 3 0 chr3 87060943 87062120 -140462458 + L1PA3 LINE L1 3786 4966 -1180 480 283 79 76 chr3 87062951 87063357 -140461221 - L2 LINE L2 0 3313 2907 927 256 81 43 chr3 87063483 87063647 -140460931 + LTR40c LTR ERVL 7 163 -302 1352 202 115 12 chr3 87063647 87063978 -140460600 + MLT1A1 LTR MaLR 1 365 0 927 256 81 43 chr3 87063978 87064255 -140460323 + LTR40c LTR ERVL 163 465 0 21 0 0 0 chr3 87064465 87064486 -140460092 + AT_rich Low_complexity Low_complexity 1 21 0 258 109 0 0 chr3 87064609 87064655 -140459923 - MADE1 DNA Mariner 0 80 35 23 54 0 0 chr3 87064706 87064743 -140459835 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr3 87065333 87065361 -140459217 + AT_rich Low_complexity Low_complexity 1 28 0 264 266 141 47 chr3 87066264 87066392 -140458186 + MIR SINE MIR 44 183 -79 300 27 0 0 chr3 87066394 87066431 -140458147 + (CA)n Simple_repeat Simple_repeat 2 38 0 406 181 0 14 chr3 87066431 87066503 -140458075 + Tigger5 DNA MER2_type 7 77 -2246 282 189 0 0 chr3 87066507 87066560 -140458018 - Tigger5 DNA MER2_type -6 2317 2265 588 29 0 0 chr3 87066630 87066700 -140457878 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 357 252 55 21 chr3 87067875 87068106 -140456472 - MER41B LTR ERV1 -205 430 56 774 202 6 42 chr3 87068242 87068410 -140456168 - FRAM SINE Alu -18 158 1 4068 158 8 8 chr3 87068422 87069151 -140455427 + L1MB2 LINE L1 5436 6164 -7 191 253 25 38 chr3 87069287 87069366 -140455212 + MIR SINE MIR 111 188 -74 1805 193 27 11 chr3 87069397 87069771 -140454807 - MLT1B LTR MaLR 0 390 11 543 265 19 12 chr3 87070702 87070864 -140453714 + MLT1H LTR MaLR 75 237 -312 263 243 150 46 chr3 87070930 87071103 -140453475 + MLT1H LTR MaLR 299 489 -66 28 0 0 0 chr3 87071104 87071132 -140453446 + AT_rich Low_complexity Low_complexity 1 28 0 412 167 14 0 chr3 87071132 87071204 -140453374 - AluJb SINE Alu -45 267 195 189 333 0 0 chr3 87071413 87071479 -140453099 - L2 LINE L2 -2 3311 3246 256 311 244 0 chr3 87071820 87071955 -140452623 - L2 LINE L2 -4 3268 3101 1435 145 0 20 chr3 87072038 87072286 -140452292 - MER1B DNA MER1_type 0 339 97 241 224 0 45 chr3 87072364 87072431 -140452147 - MLT1I LTR MaLR -274 135 72 200 333 141 20 chr3 87073071 87073170 -140451408 + MIR SINE MIR 33 143 -65 507 265 37 0 chr3 87073693 87073829 -140450749 - MIR SINE MIR -66 196 56 678 294 8 19 chr3 87074124 87074386 -140450192 + MLT1H LTR MaLR 2 260 -289 1685 149 71 27 chr3 87074536 87074831 -140449747 + AluJo SINE Alu 1 308 -4 248 297 55 55 chr3 87075277 87075426 -140449152 + MLT1I LTR MaLR 98 246 -163 231 237 140 32 chr3 87075426 87075519 -140449059 - LTR16A1 LTR ERVL -2 455 353 305 281 74 47 chr3 87075642 87075898 -140448680 - LTR16A1 LTR ERVL -194 263 1 5249 154 23 3 chr3 87076167 87077921 -140446657 + L1MA8 LINE L1 4480 6269 -22 25 31 0 0 chr3 87077923 87077955 -140446623 + AT_rich Low_complexity Low_complexity 1 32 0 583 290 133 33 chr3 87077965 87078454 -140446124 - MLT1H LTR MaLR -11 538 1 244 320 0 0 chr3 87078675 87078753 -140445825 + GA-rich Low_complexity Low_complexity 3 80 0 213 108 0 0 chr3 87078933 87078970 -140445608 + (TG)n Simple_repeat Simple_repeat 2 38 0 738 232 23 19 chr3 87080365 87080622 -140443956 + L1MD3 LINE L1 6096 7983 -12 189 323 54 62 chr3 87080625 87080755 -140443823 + MER5A DNA MER1_type 61 189 0 320 358 33 74 chr3 87082265 87082536 -140442042 - L2 LINE L2 -20 3252 2993 1035 191 0 52 chr3 87082551 87082782 -140441796 + AluJo SINE Alu 1 219 -93 825 145 13 20 chr3 87083437 87083589 -140440989 + AluJb SINE Alu 156 306 -6 213 219 0 0 chr3 87083592 87083633 -140440945 + (TG)n Simple_repeat Simple_repeat 2 42 0 629 327 65 12 chr3 87083755 87084079 -140440499 - L2 LINE L2 -463 2851 2511 384 22 0 0 chr3 87087676 87087721 -140436857 + (CCG)n Simple_repeat Simple_repeat 3 47 0 25 31 0 0 chr3 87087728 87087760 -140436818 + GC_rich Low_complexity Low_complexity 1 32 0 192 77 0 0 chr3 87087832 87087858 -140436720 + (CCG)n Simple_repeat Simple_repeat 2 27 0 267 270 113 9 chr3 87088308 87088423 -140436155 - MIR SINE MIR -15 247 121 180 307 23 23 chr3 87088511 87088599 -140435979 - MIR SINE MIR -162 100 13 257 229 52 31 chr3 87088630 87088726 -140435852 + L1MC/D LINE L1 5698 5795 -2013 1463 159 0 84 chr3 87088786 87089118 -140435460 + AluJo SINE Alu 1 306 0 354 45 0 0 chr3 87089205 87089249 -140435329 + (CA)n Simple_repeat Simple_repeat 2 45 0 1702 168 0 7 chr3 87089787 87090067 -140434511 + AluJb SINE Alu 34 311 -1 529 278 148 36 chr3 87091985 87092262 -140432316 + L2 LINE L2 3004 3311 -2 420 274 37 15 chr3 87092257 87092392 -140432186 - MIR SINE MIR -17 245 108 * 662 233 145 0 chr3 87092522 87092681 -140431897 - MER5A DNA MER1_type -1 188 7 255 236 0 0 chr3 87092884 87092939 -140431639 - MIR SINE MIR -127 135 81 1378 176 38 46 chr3 87093880 87094226 -140430352 - MLT1A1 LTR MaLR -17 348 6 1699 171 43 0 chr3 87094301 87094600 -140429978 + AluJb SINE Alu 1 312 0 767 249 6 6 chr3 87095327 87095496 -140429082 + MER5B DNA MER1_type 2 170 -8 961 183 33 5 chr3 87095508 87095721 -140428857 + MLT1C LTR MaLR 6 224 -243 1105 181 43 50 chr3 87095722 87096004 -140428574 + MLT1C LTR MaLR 188 467 0 4240 220 23 31 chr3 87097281 87098321 -140426257 - MER45B DNA AcHobo 0 1040 9 1793 84 18 69 chr3 87098773 87099047 -140425531 + AluSq SINE Alu 1 260 -53 399 21 0 0 chr3 87099066 87099114 -140425464 + (CA)n Simple_repeat Simple_repeat 1 48 0 22 35 0 0 chr3 87099789 87099818 -140424760 + AT_rich Low_complexity Low_complexity 1 29 0 782 326 37 40 chr3 87100747 87101177 -140423401 - MLT1K LTR MaLR -64 524 96 318 341 0 0 chr3 87101954 87102042 -140422536 + MER5A DNA MER1_type 4 91 -98 377 320 39 7 chr3 87102130 87102283 -140422295 + MIR SINE MIR 104 261 -1 720 203 8 0 chr3 87102820 87102948 -140421630 - FLAM_C SINE Alu -1 132 4 292 170 23 106 chr3 87103042 87103220 -140421358 - MLT1F LTR MaLR -4 538 392 257 233 58 67 chr3 87103414 87103534 -140421044 - MLT1K LTR MaLR -419 130 12 196 77 51 0 chr3 87105342 87105381 -140419197 + CT-rich Low_complexity Low_complexity 2 42 0 212 159 45 0 chr3 87105902 87105946 -140418632 + (TTAA)n Simple_repeat Simple_repeat 2 47 0 363 194 0 0 chr3 87106615 87106687 -140417891 - MER116 DNA Mariner -5 75 4 2005 108 4 0 chr3 87106964 87107233 -140417345 + AluSp SINE Alu 37 306 -7 2089 144 7 0 chr3 87107560 87107865 -140416713 - AluSx SINE Alu -4 308 2 293 203 0 54 chr3 87107939 87108013 -140416565 + MER116 DNA Mariner 4 73 -7 328 164 0 0 chr3 87108096 87108151 -140416427 - Alu SINE Alu -5 297 243 1750 113 90 4 chr3 87108151 87108407 -140416171 - AluSx SINE Alu -32 280 3 331 324 0 19 chr3 87108475 87108583 -140415995 + L2 LINE L2 3203 3308 -5 284 284 0 0 chr3 87108784 87108858 -140415720 - MIR SINE MIR -107 155 82 267 140 0 0 chr3 87109590 87109640 -140414938 + (GA)n Simple_repeat Simple_repeat 1 50 0 488 243 42 123 chr3 87110185 87110494 -140414084 + HAL1 LINE L1 971 1254 -1253 1997 150 3 10 chr3 87110967 87111280 -140413298 + AluSx SINE Alu 1 311 -1 23 0 0 0 chr3 87112307 87112330 -140412248 + AT_rich Low_complexity Low_complexity 1 23 0 53 40 0 30 chr3 87112343 87112443 -140412135 + AT_rich Low_complexity Low_complexity 1 97 0 30 45 0 0 chr3 87112769 87112813 -140411765 + AT_rich Low_complexity Low_complexity 1 44 0 280 278 93 12 chr3 87112889 87113051 -140411527 - L1ME4a LINE L1 -56 6065 5891 231 206 0 48 chr3 87113030 87113093 -140411485 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 * 3482 100 45 4 chr3 87113163 87113654 -140410924 - MER9 LTR ERVK 0 511 1 384 82 0 0 chr3 87115497 87115540 -140409038 + (TG)n Simple_repeat Simple_repeat 1 104 0 384 82 0 0 chr3 87115540 87115601 -140408977 + (TG)n Simple_repeat Simple_repeat 2 62 0 299 327 93 6 chr3 87115812 87115974 -140408604 + MER5B DNA MER1_type 1 176 -2 2420 74 0 0 chr3 87116510 87116807 -140407771 + AluY SINE Alu 1 297 -14 323 227 23 0 chr3 87116814 87116902 -140407676 + L1MC4 LINE L1 6614 6703 -1339 219 218 0 0 chr3 87116902 87116957 -140407621 + (TA)n Simple_repeat Simple_repeat 1 55 0 207 0 0 0 chr3 87117189 87117212 -140407366 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 857 143 0 0 chr3 87117222 87117348 -140407230 - AluSq/x SINE Alu -186 126 1 573 265 52 38 chr3 87117416 87117627 -140406951 - MLT1K LTR MaLR -41 547 334 862 213 13 85 chr3 87117659 87117770 -140406808 - MIR SINE MIR -17 245 158 1591 176 28 24 chr3 87117770 87118059 -140406519 - AluJo SINE Alu -22 290 1 862 213 13 85 chr3 87118059 87118182 -140406396 - MIR SINE MIR -104 158 28 312 48 0 0 chr3 87118664 87118706 -140405872 + (TC)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr3 87118718 87118738 -140405840 + (T)n Simple_repeat Simple_repeat 1 20 0 225 0 0 0 chr3 87118928 87118953 -140405625 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 1984 156 0 0 chr3 87119406 87119701 -140404877 + AluJo SINE Alu 2 296 -16 3536 164 45 68 chr3 87120270 87121074 -140403504 + LTR1 LTR ERV1 1 785 0 398 279 39 0 chr3 87122159 87122288 -140402290 + MIR SINE MIR 120 253 -9 2189 113 3 0 chr3 87122468 87122761 -140401817 - AluSx SINE Alu -18 294 1 386 362 0 0 chr3 87122985 87123090 -140401488 + L2 LINE L2 3164 3268 -4 1964 144 0 0 chr3 87123129 87123413 -140401165 - AluSx SINE Alu -20 292 9 483 321 42 50 chr3 87124003 87124063 -140400515 - MLT1I LTR MaLR -115 294 235 1070 194 19 28 chr3 87124063 87124274 -140400304 - MER3 DNA MER1_type 0 209 1 483 321 42 50 chr3 87124274 87124449 -140400129 - MLT1I LTR MaLR -174 235 61 1672 202 32 23 chr3 87124449 87124791 -140399787 + MLT2B1 LTR ERVL 1 345 -175 311 108 36 65 chr3 87125143 87125282 -140399296 + (CTATA)n Simple_repeat Simple_repeat 1 135 0 349 148 0 4 chr3 87125320 87125385 -140399193 - MLT2B1 LTR ERVL -351 63 1 234 389 19 0 chr3 87125385 87125489 -140399089 + MLT1I LTR MaLR 61 166 -243 256 186 41 70 chr3 87125637 87125809 -140398769 + (TATATG)n Simple_repeat Simple_repeat 3 169 0 330 90 59 62 chr3 87125872 87126232 -140398346 + (TA)n Simple_repeat Simple_repeat 1 359 0 259 100 40 60 chr3 87126238 87126288 -140398290 + MLT2B1 LTR ERVL 366 414 0 252 200 57 14 chr3 87126288 87126352 -140398226 - MLT1I LTR MaLR -342 67 1 1379 193 3 75 chr3 87126594 87126900 -140397678 - AluJb SINE Alu -18 284 1 319 324 195 43 chr3 87127104 87127314 -140397264 - MIR SINE MIR -20 242 1 237 297 90 41 chr3 87127384 87127529 -140397049 - MIR3 SINE MIR -17 191 40 308 200 70 0 chr3 87128407 87128507 -140396071 + (TA)n Simple_repeat Simple_repeat 2 108 0 479 292 14 21 chr3 87128700 87128844 -140395734 + LTR16A1 LTR ERVL 3 145 -312 335 232 30 10 chr3 87128842 87128941 -140395637 + LTR16A1 LTR ERVL 266 366 -91 * 2718 209 52 13 chr3 87129267 87129957 -140394621 + L1MD3 LINE L1 7077 7989 -6 346 239 45 0 chr3 87130249 87130337 -140394241 + MIR SINE MIR 106 197 -65 198 254 30 45 chr3 87130414 87130481 -140394097 + L2 LINE L2 533 598 -2716 213 94 0 0 chr3 87130492 87130524 -140394054 + (TA)n Simple_repeat Simple_repeat 2 33 0 302 280 28 9 chr3 87131852 87131959 -140392619 + L1MEc LINE L1 2265 2373 -4023 274 224 95 35 chr3 87131965 87132081 -140392497 + L1ME2 LINE L1 5820 5942 -222 30 0 0 0 chr3 87132081 87132111 -140392467 + AT_rich Low_complexity Low_complexity 1 30 0 204 308 94 34 chr3 87132151 87132268 -140392310 - MER5A DNA MER1_type -22 167 44 * 334 373 8 8 chr3 87132182 87132300 -140392278 + MER5A DNA MER1_type 72 189 0 286 313 135 0 chr3 87132338 87132434 -140392144 - MIR SINE MIR -73 135 27 298 316 24 45 chr3 87133574 87133710 -140390868 - MIR3 SINE MIR -17 191 58 3129 141 22 8 chr3 87133710 87134207 -140390371 - LTR10B LTR ERV1 0 505 2 298 316 24 45 chr3 87134207 87134257 -140390321 - MIR3 SINE MIR -150 58 8 217 379 11 0 chr3 87134469 87134556 -140390022 + MIR3 SINE MIR 2 89 -119 185 231 58 19 chr3 87134790 87134842 -140389736 - L3 LINE CR1 -6 1571 1518 219 228 0 35 chr3 87135870 87135927 -140388651 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 596 286 32 26 chr3 87136017 87136206 -140388372 + MIR SINE MIR 11 200 -62 2016 171 3 3 chr3 87136690 87137034 -140387544 - MER2 DNA MER2_type 0 344 1 259 314 41 72 chr3 87137369 87137563 -140387015 - MIR SINE MIR -67 195 8 243 88 0 0 chr3 87139151 87139185 -140385393 + (TA)n Simple_repeat Simple_repeat 1 34 0 188 67 33 0 chr3 87140867 87140897 -140383681 + (TTCC)n Simple_repeat Simple_repeat 3 33 0 1458 196 0 50 chr3 87141185 87141486 -140383092 - AluJo SINE Alu -26 286 1 834 274 98 57 chr3 87141738 87142179 -140382399 + L2 LINE L2 2855 3313 0 304 22 0 22 chr3 87142766 87142812 -140381766 - L1PB1 LINE L1 -2 6149 6105 1053 183 121 27 chr3 87144552 87144877 -140379701 + MSTD LTR MaLR 1 396 0 991 144 131 1 chr3 87144924 87145146 -140379432 + L1MB3 LINE L1 5716 5938 -233 522 181 90 65 chr3 87145473 87145628 -140378950 + LTR45B LTR ERV1 331 489 0 998 175 34 10 chr3 87145628 87145834 -140378744 + L1MB3 LINE L1 5933 6143 -40 1395 205 83 30 chr3 87145834 87146195 -140378383 + MLT1B LTR MaLR 1 380 -10 1211 248 73 90 chr3 87146447 87147271 -140377307 + L1MDb LINE L1 774 1610 -4796 189 107 0 0 chr3 87147271 87147299 -140377279 + (TA)n Simple_repeat Simple_repeat 1 28 0 1211 248 73 90 chr3 87147299 87147358 -140377220 + L1MDb LINE L1 1610 1605 -4801 198 103 0 0 chr3 87147358 87147387 -140377191 + (TA)n Simple_repeat Simple_repeat 2 30 0 1211 248 73 90 chr3 87147387 87147472 -140377106 + L1MDb LINE L1 1604 1689 -4717 433 159 168 35 chr3 87147479 87147592 -140376986 - MSTC LTR MaLR -51 377 250 3816 247 125 44 chr3 87147605 87149967 -140374611 + L1MDb LINE L1 1577 4238 -2168 2079 177 57 7 chr3 87149991 87150398 -140374180 - MSTC LTR MaLR -1 427 1 774 260 6 11 chr3 87150398 87150575 -140374003 + LTR53 LTR ERVL 10 185 -334 260 217 0 84 chr3 87150871 87150954 -140373624 + MLT1K LTR MaLR 481 556 -32 1606 237 27 47 chr3 87151002 87151513 -140373065 + MLT1D LTR MaLR 1 501 -4 3754 220 85 24 chr3 87151623 87152234 -140372344 - L1MC4 LINE L1 -190 7852 7279 2293 89 0 0 chr3 87152234 87152516 -140372062 + AluSx SINE Alu 17 298 -14 3754 220 85 24 chr3 87152516 87152848 -140371730 - L1MC4 LINE L1 -763 7279 6834 2248 76 10 0 chr3 87152848 87153151 -140371427 - L1PA7 LINE L1 0 6154 5849 3754 220 85 24 chr3 87153151 87153280 -140371298 - L1MC4 LINE L1 -1208 6834 6714 1529 174 147 21 chr3 87153283 87153471 -140371107 - MSTA LTR MaLR 0 428 265 195 42 0 0 chr3 87153471 87153495 -140371083 + (GA)n Simple_repeat Simple_repeat 1 24 0 1529 174 147 21 chr3 87153495 87153686 -140370892 - MSTA LTR MaLR -163 265 1 958 248 20 8 chr3 87153700 87153954 -140370624 - L1M4 LINE L1 -3586 2560 2304 586 194 127 0 chr3 87153951 87154116 -140370462 - L1MB7 LINE L1 -1 6183 5998 * 17029 46 9 8 chr3 87154121 87157030 -140367548 + L1PA5 LINE L1 3243 6151 -3 1385 239 66 24 chr3 87157172 87157598 -140366980 + Charlie4a DNA MER1_type 1 444 -64 27 0 0 0 chr3 87158577 87158604 -140365974 + AT_rich Low_complexity Low_complexity 1 27 0 626 266 219 14 chr3 87158720 87158998 -140365580 - LTR16C LTR ERVL -59 432 98 1302 182 91 40 chr3 87159826 87160123 -140364455 - AluJb SINE Alu 0 312 1 1015 181 18 53 chr3 87160127 87160354 -140364224 + MER20 DNA MER1_type 1 219 0 1116 303 30 13 chr3 87160527 87160920 -140363658 - LTR16C LTR ERVL -7 484 85 1805 158 14 0 chr3 87163236 87163548 -140361030 + AluSx SINE Alu 1 316 0 21 0 0 0 chr3 87164082 87164103 -140360475 + AT_rich Low_complexity Low_complexity 1 21 0 403 48 60 24 chr3 87164394 87164477 -140360101 + CT-rich Low_complexity Low_complexity 3 88 0 2118 127 3 3 chr3 87164929 87165229 -140359349 + AluSx SINE Alu 1 300 -12 246 264 0 0 chr3 87165677 87165730 -140358848 - L2 LINE L2 -13 3300 3248 363 256 70 31 chr3 87165929 87166058 -140358520 - L2 LINE L2 -9 3304 3171 201 154 0 0 chr3 87166086 87166125 -140358453 + A-rich Low_complexity Low_complexity 5 43 0 22 35 0 0 chr3 87166223 87166252 -140358326 + AT_rich Low_complexity Low_complexity 1 29 0 1268 254 60 73 chr3 87166387 87167067 -140357511 + HsTC2a DNA Tc2 72 742 -2 2448 58 0 0 chr3 87167117 87167412 -140357166 - AluY SINE Alu -16 295 1 2271 91 7 0 chr3 87168290 87168586 -140355992 + AluSq SINE Alu 1 298 -15 31 20 0 20 chr3 87168618 87168630 -140355948 + AT_rich Low_complexity Low_complexity 1 12 -36 7717 14 7 1 chr3 87168630 87169912 -140354666 + L1PA3 LINE L1 4866 6152 -3 31 20 0 20 chr3 87169912 87169948 -140354630 + AT_rich Low_complexity Low_complexity 12 48 0 1539 198 84 56 chr3 87171755 87172290 -140352288 - MER34B LTR ERV1 -5 560 11 697 282 40 40 chr3 87172387 87172639 -140351939 + MIR SINE MIR 3 254 -8 3396 114 11 47 chr3 87172642 87173275 -140351303 - MER4B LTR ERV1 0 779 1 1432 217 18 4 chr3 87173729 87174010 -140350568 + MER49 LTR ERV1 1 285 -638 1547 211 32 12 chr3 87174072 87174418 -140350160 + MER4D LTR ERV1 551 903 0 29 0 0 0 chr3 87174665 87174694 -140349884 + AT_rich Low_complexity Low_complexity 1 29 0 2258 97 0 0 chr3 87174694 87174984 -140349594 - AluY SINE Alu -18 293 4 1230 188 103 4 chr3 87174989 87175260 -140349318 - AluJo SINE Alu -14 298 1 301 280 76 15 chr3 87175465 87175597 -140348981 - MER91C DNA MER1_type 0 140 1 518 270 24 10 chr3 87176448 87176673 -140347905 + L1ME2 LINE L1 5945 6334 0 2370 87 0 3 chr3 87177289 87177600 -140346978 + AluY SINE Alu 1 310 -1 1795 135 14 24 chr3 87177674 87177962 -140346616 - THE1B LTR MaLR 0 364 80 1743 163 98 53 chr3 87177962 87178471 -140346107 + pTR5 LTR ERV1 747 1278 -1160 1754 234 79 32 chr3 87178495 87179055 -140345523 - L1ME2 LINE L1 -57 6107 5522 227 312 65 26 chr3 87179611 87179688 -140344890 + MIR SINE MIR 29 108 -154 273 296 11 11 chr3 87180240 87180328 -140344250 - MIR SINE MIR -15 247 160 2232 119 3 0 chr3 87180658 87180969 -140343609 + AluSx SINE Alu 1 312 0 1093 216 62 26 chr3 87181391 87181697 -140342881 - L1ME1 LINE L1 -5 6659 6343 3042 253 59 47 chr3 87181717 87182357 -140342221 - L1ME1 LINE L1 -1142 5502 4871 2857 7 0 0 chr3 87182357 87182667 -140341911 - AluY SINE Alu -1 310 1 3042 253 59 47 chr3 87182667 87182806 -140341772 - L1ME1 LINE L1 -1773 4871 4735 2154 123 0 25 chr3 87182806 87183122 -140341456 - AluSx SINE Alu -4 308 1 3042 253 59 47 chr3 87183122 87183917 -140340661 - L1ME1 LINE L1 -1909 4735 3908 1033 233 38 19 chr3 87184104 87184431 -140340147 - L1M4 LINE L1 -1333 5231 4911 278 65 0 43 chr3 87184466 87184512 -140340066 + (TTCC)n Simple_repeat Simple_repeat 1 44 0 777 227 5 6 chr3 87184516 87184740 -140339838 - L1MCa LINE L1 -4689 1796 1120 1163 249 80 23 chr3 87184741 87185139 -140339439 - L1MB7 LINE L1 -10 6174 5754 * 2347 223 47 47 chr3 87185138 87185355 -140339223 - L1ME1 LINE L1 -3171 3473 3257 1567 228 3 3 chr3 87185355 87185653 -140338925 - AluJb SINE Alu -14 298 1 2347 223 47 47 chr3 87185653 87186720 -140337858 - L1ME1 LINE L1 -3387 3257 2185 746 259 119 31 chr3 87186738 87187058 -140337520 - MER7A DNA MER2_type 0 346 1 4426 248 92 36 chr3 87187066 87188786 -140335792 - L1ME1 LINE L1 -4825 1821 13 3687 262 33 22 chr3 87188805 87189926 -140334652 - L1MCa LINE L1 -4912 1133 1 310 262 185 40 chr3 87189950 87190252 -140334326 - L1MEc LINE L1 -5203 1193 848 1964 178 25 0 chr3 87190258 87190584 -140333994 + MER1B DNA MER1_type 1 334 -5 513 368 36 26 chr3 87190926 87191347 -140333231 - L1MEc LINE L1 -5960 436 12 336 319 14 21 chr3 87191640 87191784 -140332794 - MIR SINE MIR 0 262 120 21 0 0 0 chr3 87192153 87192174 -140332404 + AT_rich Low_complexity Low_complexity 1 21 0 389 319 44 2 chr3 87193430 87193590 -140330988 - MIR3 SINE MIR -58 150 5 2327 107 0 0 chr3 87194974 87195283 -140329295 - AluSc SINE Alu 0 309 1 198 71 0 0 chr3 87195400 87195428 -140329150 + (T)n Simple_repeat Simple_repeat 1 28 0 249 33 0 0 chr3 87195524 87195554 -140329024 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 282 160 0 0 chr3 87195597 87195647 -140328931 + A-rich Low_complexity Low_complexity 1 50 0 535 279 85 20 chr3 87197374 87197575 -140327003 + MLT1H LTR MaLR 2 215 -334 243 360 85 0 chr3 87198118 87198282 -140326296 - LTR67 LTR ERVL 0 557 380 1016 279 86 35 chr3 87198509 87199003 -140325575 - L2 LINE L2 -55 3258 2738 3008 192 36 53 chr3 87199041 87199796 -140324782 - L1MB5 LINE L1 0 6174 5433 329 203 0 0 chr3 87199811 87199870 -140324708 - L2 LINE L2 -613 2701 2643 387 0 0 0 chr3 87201095 87201138 -140323440 + (TG)n Simple_repeat Simple_repeat 2 44 0 327 213 0 0 chr3 87201524 87201585 -140322993 + Charlie5 DNA MER1_type 10 70 -2542 * 464 183 12 67 chr3 87201583 87201747 -140322831 + Charlie5 DNA MER1_type 2469 2623 0 920 294 114 43 chr3 87201758 87202398 -140322180 - L2 LINE L2 -85 3228 2544 1685 246 27 86 chr3 87203725 87204307 -140320271 - MLT1E2 LTR MaLR 0 626 111 1099 168 4 66 chr3 87205085 87205311 -140319267 - MER20 DNA MER1_type -2 217 6 818 240 33 0 chr3 87205323 87205506 -140319072 - MER5A DNA MER1_type 0 189 1 767 317 113 16 chr3 87205522 87205904 -140318674 + LTR16C LTR ERVL 73 491 0 1644 147 78 36 chr3 87205928 87206288 -140318290 + THE1C LTR MaLR 1 375 0 706 197 0 15 chr3 87206312 87206444 -140318134 - FLAM_C SINE Alu -3 130 1 2098 132 0 3 chr3 87206448 87206752 -140317826 - AluSg SINE Alu -5 305 3 809 227 54 25 chr3 87206820 87207023 -140317555 + MER20 DNA MER1_type 7 215 -4 279 0 0 0 chr3 87208171 87208202 -140316376 + (TG)n Simple_repeat Simple_repeat 2 32 0 2265 100 3 7 chr3 87208302 87208601 -140315977 + AluSp SINE Alu 2 299 -14 707 49 20 10 chr3 87209528 87209630 -140314948 + L1PA2 LINE L1 6051 6153 -2 332 340 30 43 chr3 87210206 87210438 -140314140 - MLT1K LTR MaLR -174 414 186 248 228 51 25 chr3 87210613 87210692 -140313886 - MLT1H LTR MaLR -15 534 454 561 284 0 32 chr3 87210757 87210947 -140313631 - MLT1H LTR MaLR -315 234 51 23 54 0 0 chr3 87211172 87211209 -140313369 + AT_rich Low_complexity Low_complexity 1 37 0 2455 61 3 6 chr3 87211827 87212139 -140312439 + AluY SINE Alu 1 311 0 1139 154 14 61 chr3 87212382 87212596 -140311982 - MER20 DNA MER1_type 0 219 16 427 287 49 14 chr3 87213298 87213441 -140311137 + MIR SINE MIR 3 150 -112 888 271 18 0 chr3 87213666 87213884 -140310694 - MER58A DNA MER1_type -1 223 2 5936 117 2 23 chr3 87214041 87214627 -140309951 + L1PB3 LINE L1 5216 5777 -377 300 27 0 0 chr3 87214627 87214664 -140309914 + (TG)n Simple_repeat Simple_repeat 2 38 0 5936 117 2 23 chr3 87214664 87215034 -140309544 + L1PB3 LINE L1 5777 6153 -1 3524 173 62 24 chr3 87215426 87216179 -140308399 + L1MD1 LINE L1 5459 6240 -2 2084 188 178 0 chr3 87216513 87216556 -140308022 - MLT2B2 LTR ERVL -6 509 475 195 42 0 0 chr3 87216556 87216580 -140307998 + (GA)n Simple_repeat Simple_repeat 2 25 0 2084 188 178 0 chr3 87216580 87216968 -140307610 - MLT2B2 LTR ERVL -40 475 1 667 162 15 37 chr3 87216968 87217104 -140307474 + FLAM_A SINE Alu 1 133 0 197 339 37 9 chr3 87218766 87218875 -140305703 + MIR SINE MIR 141 252 -10 33 43 0 0 chr3 87218930 87218977 -140305601 + AT_rich Low_complexity Low_complexity 1 47 0 1576 207 38 44 chr3 87219276 87219643 -140304935 - MLT1A1 LTR MaLR 0 365 1 21 0 0 0 chr3 87219661 87219682 -140304896 + AT_rich Low_complexity Low_complexity 1 21 0 521 198 111 0 chr3 87221628 87221754 -140302824 - MER21B LTR ERV1 -37 826 687 968 134 13 19 chr3 87221777 87221934 -140302644 - AluSq SINE Alu -157 156 1 286 214 19 19 chr3 87221974 87222077 -140302501 + CT-rich Low_complexity Low_complexity 3 105 0 395 250 87 5 chr3 87222321 87222505 -140302073 - HAL1b LINE L1 -225 1123 925 285 269 47 54 chr3 87222541 87222690 -140301888 - HAL1b LINE L1 -766 582 435 270 121 52 17 chr3 87222840 87222898 -140301680 - LTR2B LTR ERV1 -430 60 1 24521 113 8 5 chr3 87222898 87226432 -140298146 - Harlequin LTR ERV1 0 6896 3352 5186 53 105 72 chr3 87226431 87227403 -140297175 - Harlequin LTR ERV1 -4322 2574 1571 * 5524 113 22 12 chr3 87227389 87228278 -140296300 - Harlequin LTR ERV1 -5986 910 13 496 91 0 0 chr3 87228290 87228356 -140296222 - LTR2B LTR ERV1 0 490 425 755 201 0 8 chr3 87228819 87228953 -140295625 - FLAM_A SINE Alu 0 133 1 2364 73 0 3 chr3 87230487 87230809 -140293769 - AluY SINE Alu 0 311 1 1295 183 23 108 chr3 87231105 87231504 -140293074 + MLT1A1 LTR MaLR 1 365 0 180 97 0 0 chr3 87232352 87232383 -140292195 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 3976 209 10 10 chr3 87232855 87233646 -140290932 + MER52A LTR ERV1 965 1755 0 655 283 88 84 chr3 87233743 87233944 -140290634 - HAL1 LINE L1 -1122 1385 1186 2000 120 0 0 chr3 87233944 87234218 -140290360 - AluSx SINE Alu 0 312 39 655 283 88 84 chr3 87234218 87234539 -140290039 - HAL1 LINE L1 -1321 1186 861 1027 281 133 9 chr3 87235761 87236198 -140288380 + LTR16C LTR ERVL 1 491 0 2498 72 0 0 chr3 87236654 87236961 -140287617 + AluY SINE Alu 1 307 -4 2506 122 23 52 chr3 87237546 87237987 -140286591 + MSTA LTR MaLR 1 428 0 410 281 48 34 chr3 87238666 87238812 -140285766 + MIR SINE MIR 85 232 -30 682 173 0 0 chr3 87238813 87238923 -140285655 - MLT1A2 LTR MaLR 0 374 265 729 260 0 0 chr3 87238943 87239097 -140285481 - MLT1A2 LTR MaLR -220 154 1 192 206 0 0 chr3 87239930 87239964 -140284614 - MER5A DNA MER1_type -4 185 152 401 182 114 0 chr3 87240124 87240212 -140284366 + MER3 DNA MER1_type 112 209 0 397 325 33 26 chr3 87240640 87240791 -140283787 + L2 LINE L2 3156 3307 -6 302 182 15 0 chr3 87240802 87240868 -140283710 + (TA)n Simple_repeat Simple_repeat 1 67 0 2015 161 30 3 chr3 87240868 87241198 -140283380 + MER2 DNA MER2_type 1 339 -6 249 330 70 30 chr3 87241249 87241349 -140283229 - MER5A DNA MER1_type -30 159 56 465 243 21 62 chr3 87242152 87242296 -140282282 + MIR SINE MIR 17 154 -108 1831 162 11 28 chr3 87242296 87242655 -140281923 - MER47A DNA MER2_type 0 366 14 20580 66 9 3 chr3 87242883 87245913 -140278665 + L1P2 LINE L1 2631 5680 -474 5187 151 42 6 chr3 87246027 87246937 -140277641 - Tigger3b DNA MER2_type -287 944 2 638 225 32 43 chr3 87247519 87247706 -140276872 + MIR SINE MIR 78 262 0 239 261 34 34 chr3 87248902 87248990 -140275588 - MLT1K LTR MaLR -64 524 437 3050 108 2 20 chr3 87249000 87249452 -140275126 - MLT2A1 LTR ERVL 0 444 1 1696 214 27 3 chr3 87250947 87251279 -140273299 - MLT1A1 LTR MaLR -2 363 24 275 270 75 62 chr3 87252955 87253196 -140271382 - L1MC5 LINE L1 -61 7900 7657 362 269 58 13 chr3 87253209 87253362 -140271216 + L1ME LINE L1 12 169 -5901 1556 142 21 0 chr3 87253530 87253763 -140270815 - AluSx SINE Alu -11 301 64 14262 118 30 59 chr3 87253817 87256360 -140268218 + L1P LINE L1 11 2477 -3669 280 308 147 67 chr3 87256910 87257184 -140267394 + MLT1L LTR MaLR 21 332 -283 3432 108 32 6 chr3 87257184 87257714 -140266864 + L1PA13 LINE L1 5620 6163 0 280 308 147 67 chr3 87257714 87257799 -140266779 + MLT1L LTR MaLR 332 409 -206 377 319 82 52 chr3 87258391 87258720 -140265858 - L3 LINE CR1 -7 1570 1232 23 33 0 0 chr3 87258961 87258991 -140265587 + AT_rich Low_complexity Low_complexity 1 30 0 372 77 0 0 chr3 87259079 87259131 -140265447 + (TTCC)n Simple_repeat Simple_repeat 3 54 0 2282 126 46 3 chr3 87259857 87260206 -140264372 - THE1B LTR MaLR 0 364 1 334 248 67 0 chr3 87260237 87260342 -140264236 - MER5A DNA MER1_type -77 112 1 770 289 11 0 chr3 87260355 87260535 -140264043 - MER5A DNA MER1_type -6 183 2 423 284 149 10 chr3 87261234 87261442 -140263136 + MIR SINE MIR 12 248 -14 493 311 116 30 chr3 87264002 87264304 -140260274 + L2 LINE L2 2986 3313 0 500 333 104 54 chr3 87264760 87265554 -140259024 + L2 LINE L2 2429 3247 -25 1496 266 38 36 chr3 87265734 87266287 -140258291 + L1ME3A LINE L1 5613 6166 -4 659 352 24 8 chr3 87266462 87266709 -140257869 - MIR SINE MIR 0 262 12 26 50 0 0 chr3 87266742 87266782 -140257796 + AT_rich Low_complexity Low_complexity 1 40 0 29 0 0 0 chr3 87267256 87267285 -140257293 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 87267558 87267579 -140256999 + AT_rich Low_complexity Low_complexity 1 21 0 1900 133 4 7 chr3 87267964 87268263 -140256315 - AluSx SINE Alu 0 302 5 204 67 0 0 chr3 87268291 87268321 -140256257 + (TC)n Simple_repeat Simple_repeat 2 31 0 207 162 0 0 chr3 87268322 87268359 -140256219 + (TATATG)n Simple_repeat Simple_repeat 2 38 0 2667 126 62 6 chr3 87268823 87269165 -140255413 - L1PB1 LINE L1 -1 6150 5774 276 30 0 0 chr3 87269165 87269198 -140255380 + (TG)n Simple_repeat Simple_repeat 2 34 0 2667 126 62 6 chr3 87269198 87269323 -140255255 - L1PB1 LINE L1 -377 5774 5657 10668 203 58 9 chr3 87269423 87272321 -140252257 - L1PBa LINE L1 -1600 5262 1905 1727 141 0 0 chr3 87272321 87272570 -140252008 - AluSx SINE Alu -5 307 59 10668 203 58 9 chr3 87272570 87274206 -140250372 - L1PBa LINE L1 -4957 1905 351 405 63 16 16 chr3 87274207 87274270 -140250308 + LTR2B LTR ERV1 1 63 -427 478 276 122 18 chr3 87274975 87275196 -140249382 - MLT1K LTR MaLR 0 588 345 689 283 16 34 chr3 87276231 87276553 -140248025 - L1ME LINE L1 -5308 762 447 673 306 59 51 chr3 87276962 87277569 -140247009 + L1MEc LINE L1 851 1462 -4934 1549 265 84 19 chr3 87277569 87278268 -140246310 + L1M4 LINE L1 4565 5309 -837 1147 167 11 5 chr3 87278269 87278455 -140246123 + AluJo SINE Alu 86 272 -40 480 177 0 0 chr3 87278598 87278694 -140245884 - L1 LINE L1 -1416 4730 4635 1377 211 0 0 chr3 87278695 87278998 -140245580 + L1 LINE L1 4331 4633 -1513 840 221 102 72 chr3 87278999 87279470 -140245108 + L1MDa LINE L1 1563 2047 -4493 2196 103 29 11 chr3 87279738 87280088 -140244490 + L1MA2 LINE L1 5948 6303 -1 999 280 43 19 chr3 87280153 87280478 -140244100 + LTR16A LTR ERVL 112 444 -6 268 322 43 17 chr3 87281487 87281602 -140242976 + MIR SINE MIR 7 124 -138 517 202 11 0 chr3 87281993 87282082 -140242496 + MER7A DNA MER2_type 1 88 -258 1675 170 44 26 chr3 87282230 87282572 -140242006 + MER7A DNA MER2_type 1 346 0 26 30 0 0 chr3 87282572 87282605 -140241973 + AT_rich Low_complexity Low_complexity 1 33 0 1079 296 73 14 chr3 87282731 87283289 -140241289 - L1ME3A LINE L1 -200 5970 5380 1471 264 65 44 chr3 87283415 87284190 -140240388 - L1ME3A LINE L1 -873 5273 4483 25 51 0 0 chr3 87285172 87285211 -140239367 + AT_rich Low_complexity Low_complexity 1 39 0 317 329 33 40 chr3 87285428 87285580 -140238998 - MIR SINE MIR -89 173 23 605 249 19 63 chr3 87285684 87285889 -140238689 - L1ME LINE L1 -403 5763 5568 594 148 39 16 chr3 87285911 87286039 -140238539 - AluSp/q SINE Alu -10 303 173 324 0 0 0 chr3 87286433 87286469 -140238109 + (TTA)n Simple_repeat Simple_repeat 2 37 0 936 170 5 121 chr3 87286507 87286600 -140237978 - AluJb SINE Alu -95 217 115 243 0 0 0 chr3 87286600 87286627 -140237951 + (TG)n Simple_repeat Simple_repeat 2 28 0 936 170 5 121 chr3 87286627 87286652 -140237926 - AluJb SINE Alu -197 115 89 348 24 0 0 chr3 87286652 87286693 -140237885 + (TTG)n Simple_repeat Simple_repeat 2 42 0 936 170 5 121 chr3 87286693 87286796 -140237782 - AluJb SINE Alu -223 89 21 831 107 66 8 chr3 87288175 87288296 -140236282 - AluSg1 SINE Alu -181 128 1 3535 234 60 31 chr3 87288302 87289652 -140234926 - L1ME LINE L1 -595 5571 4188 553 214 0 0 chr3 87289964 87290067 -140234511 + MLT2F LTR ERVL 1 103 -560 22 35 0 0 chr3 87290251 87290280 -140234298 + AT_rich Low_complexity Low_complexity 1 29 0 485 292 14 67 chr3 87290431 87290640 -140233938 - MIR SINE MIR 0 262 65 1076 244 176 21 chr3 87290737 87291168 -140233410 + MLT2F LTR ERVL 4 501 -162 491 56 14 0 chr3 87291215 87291286 -140233292 + (CA)n Simple_repeat Simple_repeat 2 73 0 22 70 0 0 chr3 87291299 87291342 -140233236 + AT_rich Low_complexity Low_complexity 1 43 0 292 329 0 0 chr3 87291557 87291639 -140232939 + MIR3 SINE MIR 73 154 -54 2218 237 105 17 chr3 87291994 87292399 -140232179 - L1ME2 LINE L1 0 6164 5796 2682 177 10 2 chr3 87292399 87292880 -140231698 + MER31A LTR ERV1 1 485 0 2218 237 105 17 chr3 87292880 87293277 -140231301 - L1ME2 LINE L1 -368 5796 5292 240 286 53 53 chr3 87293363 87293552 -140231026 - L1ME2 LINE L1 -1808 4338 4150 364 211 42 0 chr3 87293589 87293684 -140230894 - L1MDa LINE L1 -878 5662 5564 2097 276 94 39 chr3 87293969 87295161 -140229417 - L1MDa LINE L1 -1610 4930 3805 1091 119 124 0 chr3 87295161 87295346 -140229232 - L1PB3 LINE L1 -11 6143 5936 2097 276 94 39 chr3 87295346 87295451 -140229127 - L1MDa LINE L1 -2735 3805 3707 2395 77 0 10 chr3 87295451 87295764 -140228814 - AluY SINE Alu -1 310 1 2097 276 94 39 chr3 87295764 87295850 -140228728 - L1MDa LINE L1 -2833 3707 3470 331 323 12 6 chr3 87295857 87296021 -140228557 - L1MDa LINE L1 -3382 3158 2994 1167 233 25 70 chr3 87296117 87296177 -140228401 - MLT1E1 LTR MaLR 0 654 593 2247 95 3 0 chr3 87296177 87296471 -140228107 - AluSq SINE Alu -18 295 1 1167 233 25 70 chr3 87296471 87296767 -140227811 - MLT1E1 LTR MaLR -61 593 314 514 306 6 6 chr3 87296829 87296986 -140227592 - MLT1E1 LTR MaLR -497 157 1 23 0 0 0 chr3 87297777 87297800 -140226778 + AT_rich Low_complexity Low_complexity 1 23 0 860 142 7 7 chr3 87297951 87298092 -140226486 - AluSg/x SINE Alu -19 291 151 369 313 82 53 chr3 87298248 87298698 -140225880 - L2 LINE L2 -2 3311 2849 367 307 93 0 chr3 87298977 87299117 -140225461 - MIR3 SINE MIR 0 208 56 29 60 0 0 chr3 87299953 87300003 -140224575 + AT_rich Low_complexity Low_complexity 1 50 0 365 58 19 0 chr3 87300349 87300401 -140224177 + (CA)n Simple_repeat Simple_repeat 2 54 0 5734 105 32 0 chr3 87300532 87301560 -140223018 + L1PB1 LINE L1 5096 6151 0 598 276 47 14 chr3 87301596 87301893 -140222685 - L1MDa LINE L1 -4977 1563 1257 2232 257 62 28 chr3 87302065 87302875 -140221703 + L1ME3 LINE L1 5319 6155 -7 422 276 132 53 chr3 87302890 87303155 -140221423 + L1ME LINE L1 5438 5723 -447 2025 80 7 0 chr3 87303308 87303583 -140220995 - L1P4 LINE L1 -426 5748 5472 1009 80 7 0 chr3 87303583 87303716 -140220862 + L1PA11 LINE L1 6029 6166 -8 23 54 0 0 chr3 87304291 87304328 -140220250 + AT_rich Low_complexity Low_complexity 1 37 0 704 333 52 10 chr3 87305481 87305769 -140218809 - MLT1K LTR MaLR -51 537 238 198 0 0 0 chr3 87305856 87305878 -140218700 + (CAA)n Simple_repeat Simple_repeat 2 23 0 1107 217 9 0 chr3 87307452 87307673 -140216905 - MER58A DNA MER1_type 0 224 2 438 272 196 58 chr3 87308234 87308458 -140216120 + MIR SINE MIR 8 262 0 382 242 0 55 chr3 87308786 87308914 -140215664 + MLT1K LTR MaLR 468 588 0 225 196 0 0 chr3 87309065 87309116 -140215462 - LTR54 LTR ERV1 0 510 460 412 273 58 29 chr3 87309135 87309274 -140215304 - MER57B LTR ERV1 -253 181 39 1963 108 12 52 chr3 87309494 87309818 -140214760 - AluSx SINE Alu 0 312 2 245 259 61 75 chr3 87311811 87311958 -140212620 - L1ME4a LINE L1 -3 6118 5974 209 281 18 18 chr3 87312060 87312117 -140212461 + L2 LINE L2 2736 2792 -522 1073 225 81 45 chr3 87312122 87312456 -140212122 - MLT1A1 LTR MaLR -15 350 5 310 314 117 11 chr3 87312466 87312654 -140211924 + L2 LINE L2 2804 3011 -302 538 300 13 9 chr3 87313409 87313636 -140210942 + L1PBa LINE L1 125 352 -6511 2175 66 11 3 chr3 87313636 87313923 -140210655 - LTR2B LTR ERV1 0 490 202 202 316 102 43 chr3 87314266 87314522 -140210056 + L2 LINE L2 2811 3081 -191 1230 232 72 50 chr3 87314547 87315004 -140209574 - MLT1C LTR MaLR 0 467 1 284 310 52 9 chr3 87415230 87415346 -140109232 + MIR SINE MIR 126 246 -16 191 114 23 45 chr3 87415500 87415544 -140109034 - L2 LINE L2 -82 3231 3189 1813 172 0 0 chr3 87415610 87415889 -140108689 + AluJb SINE Alu 10 288 -24 231 167 0 0 chr3 87415897 87415939 -140108639 + (TG)n Simple_repeat Simple_repeat 1 42 0 2391 99 0 3 chr3 87417296 87417608 -140106970 + AluSq SINE Alu 1 311 -2 262 311 85 0 chr3 87417652 87417758 -140106820 + MIR SINE MIR 71 185 -77 180 0 0 0 chr3 87417759 87417779 -140106799 + (TC)n Simple_repeat Simple_repeat 2 21 0 214 171 37 37 chr3 87417779 87417861 -140106717 + (TA)n Simple_repeat Simple_repeat 1 82 0 1958 134 20 0 chr3 87417918 87418216 -140106362 - AluSx SINE Alu -8 304 1 1587 151 17 17 chr3 87419067 87419358 -140105220 - L1MA7 LINE L1 -2 6289 5999 253 304 14 7 chr3 87419945 87420083 -140104495 + L1ME4a LINE L1 5682 5820 -1988 226 161 0 161 chr3 87420182 87420269 -140104309 + L1ME4a LINE L1 5961 6033 -88 591 260 104 60 chr3 87420810 87421060 -140103518 + MLT1H1 LTR MaLR 1 261 -294 2060 214 74 40 chr3 87421661 87422284 -140102294 + LTR48B LTR ERV1 1 644 0 1692 186 27 0 chr3 87422404 87422699 -140101879 + AluJo SINE Alu 1 303 -9 282 291 40 73 chr3 87424231 87424382 -140100196 + L2 LINE L2 3168 3313 0 330 313 46 0 chr3 87424685 87424816 -140099762 + MIR SINE MIR 124 260 -2 1754 171 10 7 chr3 87425148 87425446 -140099132 + AluJb SINE Alu 1 299 -13 360 304 104 36 chr3 87425554 87425774 -140098804 - L2 LINE L2 0 3313 3079 202 97 32 0 chr3 87425819 87425850 -140098728 + CT-rich Low_complexity Low_complexity 1 32 0 487 180 0 30 chr3 87425851 87425951 -140098627 + MER39 LTR ERV1 611 707 0 23 86 0 0 chr3 87426298 87426356 -140098222 + AT_rich Low_complexity Low_complexity 1 58 0 781 109 0 0 chr3 87426599 87426709 -140097869 + THE1C LTR MaLR 1 110 -265 * 1100 133 0 0 chr3 87426706 87426864 -140097714 + THE1C LTR MaLR 218 375 0 988 180 73 0 chr3 87427794 87427972 -140096606 + MER58A DNA MER1_type 34 224 0 1626 133 121 3 chr3 87428781 87429104 -140095474 + MER46B DNA MER2_type 1 236 0 329 314 70 19 chr3 87429426 87429582 -140094996 - L1ME LINE L1 -424 5697 5534 312 276 118 16 chr3 87429881 87430008 -140094570 + MIR3 SINE MIR 48 187 -21 2096 131 7 0 chr3 87430068 87430373 -140094205 - AluSg SINE Alu -3 307 1 21 57 0 0 chr3 87430744 87430779 -140093799 + AT_rich Low_complexity Low_complexity 1 35 0 2275 107 0 3 chr3 87430786 87431084 -140093494 + AluSg SINE Alu 1 297 -13 1966 132 25 4 chr3 87431093 87431374 -140093204 + AluSg SINE Alu 1 287 -23 26 0 0 0 chr3 87431449 87431475 -140093103 + AT_rich Low_complexity Low_complexity 1 26 0 382 263 53 26 chr3 87431620 87431734 -140092844 - L2 LINE L2 0 3313 3197 181 267 0 100 chr3 87432182 87432242 -140092336 - L2 LINE L2 -4 3309 3256 2405 120 23 0 chr3 87433363 87433705 -140090873 - THE1B LTR MaLR 0 364 15 329 26 0 0 chr3 87433705 87433743 -140090835 - THE1B LTR MaLR -326 38 1 443 324 41 97 chr3 87434002 87434509 -140090069 + L1MEd LINE L1 298 776 -5343 1910 31 4 50 chr3 87436025 87436284 -140088294 + L1PA5 LINE L1 5900 6146 -8 21 0 0 0 chr3 87436663 87436684 -140087894 + AT_rich Low_complexity Low_complexity 1 21 0 216 313 24 24 chr3 87437674 87437757 -140086821 + MIR SINE MIR 12 94 -168 330 152 33 0 chr3 87437811 87437903 -140086675 + (TA)n Simple_repeat Simple_repeat 1 95 0 1785 187 24 6 chr3 87437978 87438315 -140086263 + MER2 DNA MER2_type 1 343 -1 2613 104 0 29 chr3 87438323 87438709 -140085869 + THE1C LTR MaLR 1 375 0 9983 112 33 36 chr3 87438720 87440287 -140084291 + THE1C-int LTR MaLR 19 1580 0 2800 87 3 11 chr3 87440287 87440665 -140083913 + THE1C LTR MaLR 1 375 0 652 329 121 24 chr3 87441621 87442216 -140082362 + L2 LINE L2 2262 2961 -353 226 261 185 11 chr3 87442291 87442383 -140082195 + L2 LINE L2 3206 3313 0 1785 142 24 30 chr3 87443123 87443419 -140081159 + AluSx SINE Alu 1 294 -18 615 224 112 29 chr3 87443804 87443974 -140080604 + MER5A DNA MER1_type 6 189 0 2410 55 0 49 chr3 87444670 87444996 -140079582 + AluY SINE Alu 1 310 -1 2205 149 36 72 chr3 87445816 87445902 -140078676 - MSTA LTR MaLR 0 428 340 474 61 0 0 chr3 87445902 87445968 -140078610 + L1PA6 LINE L1 6089 6154 0 2205 149 36 72 chr3 87445968 87446325 -140078253 - MSTA LTR MaLR -88 340 1 1127 273 108 24 chr3 87446898 87447363 -140077215 - MLT1J LTR MaLR -3 508 5 2217 259 28 24 chr3 87447375 87448057 -140076521 - MER76 LTR ERV 0 688 4 2225 93 13 22 chr3 87448762 87449075 -140075503 + AluY SINE Alu 2 311 0 1656 197 77 3 chr3 87449164 87449504 -140075074 + MLT1A1 LTR MaLR 1 365 0 191 327 97 26 chr3 87449657 87449770 -140074808 - L2 LINE L2 -961 2353 2233 2123 112 0 36 chr3 87450281 87450585 -140073993 + AluSg SINE Alu 1 293 -17 2442 119 11 3 chr3 87451369 87451730 -140072848 + THE1B LTR MaLR 1 364 0 36 53 0 0 chr3 87452271 87452328 -140072250 + AT_rich Low_complexity Low_complexity 1 57 0 369 255 64 42 chr3 87452493 87452709 -140071869 + L1MC/D LINE L1 5236 5463 -799 259 230 46 23 chr3 87452882 87452969 -140071609 - L1MC5 LINE L1 -57 7904 7816 223 269 231 27 chr3 87453290 87453476 -140071102 - MIR SINE MIR -37 225 2 368 320 87 41 chr3 87453758 87453977 -140070601 - L1ME3A LINE L1 -8 6162 5934 377 287 20 20 chr3 87454575 87454676 -140069902 - MER5A DNA MER1_type -80 109 9 1447 163 44 72 chr3 87455780 87456100 -140068478 + AluJo SINE Alu 1 311 -1 44 35 0 0 chr3 87456806 87456864 -140067714 + AT_rich Low_complexity Low_complexity 1 58 0 2846 3 0 0 chr3 87457571 87457878 -140066700 - AluYa5 SINE Alu -4 307 1 1549 230 91 104 chr3 87458547 87459003 -140065575 - L1ME3A LINE L1 -21 6149 5707 2126 141 31 3 chr3 87459003 87459357 -140065221 - THE1B LTR MaLR 0 364 1 1549 230 91 104 chr3 87459357 87459726 -140064852 - L1ME3A LINE L1 -463 5707 5335 355 295 98 23 chr3 87459730 87459903 -140064675 + MER117 DNA MER1_type 4 189 -8 580 320 115 50 chr3 87461112 87461556 -140063022 + L2 LINE L2 2837 3309 -4 1994 147 0 0 chr3 87462042 87462334 -140062244 + AluSg SINE Alu 1 292 -18 453 273 86 34 chr3 87465097 87465423 -140059155 - L1ME3A LINE L1 -205 5916 5574 180 375 55 16 chr3 87465589 87465717 -140058861 + MIR SINE MIR 113 245 -17 254 283 58 92 chr3 87466652 87466754 -140057824 + L2 LINE L2 2592 2696 -618 1361 173 34 68 chr3 87466754 87467083 -140057495 - AluJb SINE Alu 0 319 1 254 283 58 92 chr3 87467083 87467219 -140057359 + L2 LINE L2 2696 2823 -491 406 302 158 0 chr3 87467361 87467500 -140057078 - MIR SINE MIR -100 162 2 228 388 0 0 chr3 87467562 87467647 -140056931 + L2 LINE L2 3223 3307 -6 504 331 72 0 chr3 87468188 87468369 -140056209 - MIR SINE MIR -25 237 44 201 167 0 0 chr3 87468946 87468978 -140055600 + (TG)n Simple_repeat Simple_repeat 2 36 -7 192 40 0 0 chr3 87468978 87469003 -140055575 + (GA)n Simple_repeat Simple_repeat 1 25 0 201 167 0 0 chr3 87469003 87469012 -140055566 + (TG)n Simple_repeat Simple_repeat 35 43 0 1350 287 40 19 chr3 87471466 87471996 -140052582 - L1ME3A LINE L1 -20 6150 5610 628 285 140 0 chr3 87472141 87472369 -140052209 + MIR SINE MIR 2 261 -1 361 307 206 7 chr3 87473870 87474061 -140050517 + MIR SINE MIR 23 244 -18 228 305 12 37 chr3 87474118 87474200 -140050378 - L2 LINE L2 0 3272 3193 1526 198 3 20 chr3 87474419 87474717 -140049861 + AluJo SINE Alu 5 297 -15 954 191 46 16 chr3 87474717 87474911 -140049667 + MER20 DNA MER1_type 20 219 0 714 222 126 17 chr3 87475021 87475251 -140049327 - MIR SINE MIR -7 255 1 308 292 37 11 chr3 87475728 87475855 -140048723 + LTR48 LTR ERV1 5 127 -484 303 164 55 14 chr3 87475951 87476024 -140048554 + LTR48 LTR ERV1 410 485 -302 345 255 82 43 chr3 87476030 87476214 -140048364 + LTR48 LTR ERV1 595 785 -2 21 82 0 0 chr3 87476248 87476297 -140048281 + AT_rich Low_complexity Low_complexity 1 49 0 697 122 0 19 chr3 87476435 87476531 -140048047 - MLT1C LTR MaLR 0 467 374 2465 93 0 12 chr3 87476531 87476875 -140047703 - MER9 LTR ERVK 0 511 172 3016 109 0 0 chr3 87476875 87477287 -140047291 + L1P LINE L1 4 415 -5731 20020 39 0 0 chr3 87477287 87480508 -140044070 + L1PA4 LINE L1 2934 6155 0 1468 75 0 0 chr3 87480508 87480696 -140043882 - MER9 LTR ERVK -323 188 1 984 235 58 56 chr3 87480696 87481062 -140043516 - MLT1C LTR MaLR -90 390 1 24 53 0 0 chr3 87481414 87481452 -140043126 + AT_rich Low_complexity Low_complexity 1 38 0 25 75 0 0 chr3 87481605 87481658 -140042920 + AT_rich Low_complexity Low_complexity 1 53 0 5495 239 55 33 chr3 87481785 87483552 -140041026 + L1M4 LINE L1 16 1824 -4822 1262 160 55 0 chr3 87484643 87484881 -140039697 - L1MA3 LINE L1 -19 6286 6036 1562 150 44 15 chr3 87484964 87485238 -140039340 + L1PA15 LINE L1 5883 6164 -1 738 150 50 25 chr3 87485362 87485522 -140039056 - L1MA7 LINE L1 -27 6264 6101 313 218 73 18 chr3 87485506 87485616 -140038962 + L1MB1 LINE L1 5893 6008 -160 * 355 231 33 0 chr3 87485752 87485843 -140038735 + MIR SINE MIR 119 212 -50 208 373 0 0 chr3 87485889 87485948 -140038630 - L2 LINE L2 -61 3211 3153 611 312 108 47 chr3 87486149 87486678 -140037900 + L3 LINE CR1 806 1366 -211 307 287 63 14 chr3 87487168 87487311 -140037267 + MER117 DNA MER1_type 6 155 -42 473 248 171 40 chr3 87487373 87487595 -140036983 + MLT2F LTR ERVL 413 663 0 185 256 0 23 chr3 87489016 87489059 -140035519 - MER5A DNA MER1_type -6 183 142 211 315 108 18 chr3 87489340 87489451 -140035127 + MER5A DNA MER1_type 60 180 -9 204 346 7 73 chr3 87489653 87489728 -140034850 - MER5A DNA MER1_type -50 139 75 2026 228 75 24 chr3 87489728 87490302 -140034276 + LTR26 LTR ERV1 1 603 0 204 346 7 73 chr3 87490302 87490362 -140034216 - MER5A DNA MER1_type -114 75 13 31 44 0 0 chr3 87490630 87490675 -140033903 + AT_rich Low_complexity Low_complexity 1 45 0 450 308 54 33 chr3 87490718 87490958 -140033620 - MLT1K LTR MaLR -124 464 220 896 166 34 10 chr3 87491443 87491648 -140032930 - Charlie4 DNA MER1_type -1 1960 1751 262 231 0 125 chr3 87491649 87491753 -140032825 - Charlie4 DNA MER1_type -1870 91 1 211 385 11 0 chr3 87491787 87491878 -140032700 + L2 LINE L2 2716 2807 -507 717 286 89 0 chr3 87492481 87492694 -140031884 - MIR SINE MIR -26 236 5 225 0 0 0 chr3 87492948 87492973 -140031605 + (T)n Simple_repeat Simple_repeat 1 25 0 197 322 144 17 chr3 87493032 87493150 -140031428 + MIR SINE MIR 12 144 -118 3443 112 6 22 chr3 87493378 87493854 -140030724 - L1PA14 LINE L1 -2 6159 5677 204 23 0 91 chr3 87493854 87493898 -140030680 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 2056 132 0 0 chr3 87493898 87494179 -140030399 - AluSx SINE Alu -31 281 1 3443 112 6 22 chr3 87494179 87494245 -140030333 - L1PA14 LINE L1 -482 5679 5625 2291 122 0 0 chr3 87495477 87495788 -140028790 - AluSx SINE Alu -1 311 1 1374 225 81 53 chr3 87495855 87496290 -140028288 + MER69 DNA AcHobo 1 447 -2079 760 172 15 56 chr3 87496312 87496510 -140028068 + MER69 DNA AcHobo 2319 2508 -18 234 304 9 61 chr3 87498161 87498276 -140026302 - MIR SINE MIR -50 212 104 6439 157 51 3 chr3 87498299 87499433 -140025145 + Tigger1 DNA MER2_type 1 1189 -1229 307 148 0 66 chr3 87499433 87499494 -140025084 + Tigger1 DNA MER2_type 1158 1214 -1204 1738 150 0 81 chr3 87499498 87499628 -140024950 + AluSx SINE Alu 5 144 -168 624 110 0 28 chr3 87499628 87499737 -140024841 + L1PB1 LINE L1 6043 6148 -3 1738 150 0 81 chr3 87499737 87499940 -140024638 + AluSx SINE Alu 144 311 -1 7502 135 17 6 chr3 87499940 87501144 -140023434 + Tigger1 DNA MER2_type 1201 2418 0 713 239 52 0 chr3 87501330 87501485 -140023093 + MER58B DNA MER1_type 173 335 -6 226 258 0 0 chr3 87501511 87501573 -140023005 - L1MC4 LINE L1 -1339 6703 6642 23 0 0 0 chr3 87503908 87503931 -140020647 + AT_rich Low_complexity Low_complexity 1 23 0 239 242 16 16 chr3 87504109 87504171 -140020407 + MLT1J1 LTR MaLR 66 127 -319 469 300 54 8 chr3 87504871 87505001 -140019577 + MIR SINE MIR 34 169 -93 503 326 142 23 chr3 87505297 87505641 -140018937 + MLT1J2 LTR MaLR 64 448 -2 460 276 72 58 chr3 87506374 87506786 -140017792 - MLT1H LTR MaLR -44 505 54 25 31 0 0 chr3 87506920 87506952 -140017626 + AT_rich Low_complexity Low_complexity 1 32 0 2733 200 26 6 chr3 87507477 87508006 -140016572 + MER68 LTR ERV1 1 540 -22 296 350 21 21 chr3 87508100 87508243 -140016335 - L2 LINE L2 0 3313 3171 1014 84 0 0 chr3 87508344 87508486 -140016092 + (TTC)n Simple_repeat Simple_repeat 3 144 0 467 116 163 0 chr3 87508502 87508588 -140015990 - HY3 scRNA scRNA -1 100 1 240 303 15 0 chr3 87509900 87509966 -140014612 + MIR SINE MIR 125 191 -71 552 249 113 27 chr3 87510022 87510243 -140014335 - L1ME3A LINE L1 -4 6166 5927 1261 270 97 26 chr3 87510248 87510947 -140013631 - L1M4 LINE L1 -1894 4252 3504 1113 282 34 13 chr3 87510997 87511525 -140013053 - L1M4 LINE L1 -2996 3150 2612 43271 49 1 0 chr3 87511526 87517677 -140006901 + L1PA4 LINE L1 1 6155 0 25 51 0 0 chr3 87519603 87519642 -140004936 + AT_rich Low_complexity Low_complexity 1 39 0 25 51 0 0 chr3 87520052 87520091 -140004487 + AT_rich Low_complexity Low_complexity 1 39 0 1221 135 84 25 chr3 87520138 87520292 -140004286 - L1MB4 LINE L1 -6 6174 6000 2730 99 0 0 chr3 87520292 87520656 -140003922 + THE1B LTR MaLR 1 364 0 1221 135 84 25 chr3 87520656 87520738 -140003840 - L1MB4 LINE L1 -180 6000 5924 1360 213 14 66 chr3 87520742 87520868 -140003710 + MLT1A1 LTR MaLR 14 145 -220 3180 101 16 0 chr3 87520868 87521314 -140003264 + MLT2A2 LTR ERVL 1 453 0 1360 213 14 66 chr3 87521314 87521370 -140003208 + MLT1A1 LTR MaLR 145 202 -163 360 43 0 0 chr3 87521370 87521416 -140003162 + (TC)n Simple_repeat Simple_repeat 1 46 0 1360 213 14 66 chr3 87521416 87521598 -140002980 + MLT1A1 LTR MaLR 202 360 -5 4309 200 27 55 chr3 87521603 87522236 -140002342 - L1MB4 LINE L1 -252 5928 5279 1589 179 7 37 chr3 87522236 87522533 -140002045 + AluJo SINE Alu 4 291 -21 4309 200 27 55 chr3 87522533 87523638 -140000940 - L1MB4 LINE L1 -901 5279 4253 393 22 0 0 chr3 87523638 87523684 -140000894 + (TG)n Simple_repeat Simple_repeat 1 46 0 4309 200 27 55 chr3 87523684 87523928 -140000650 - L1MB4 LINE L1 -1927 4253 4004 331 309 6 31 chr3 87524023 87524185 -140000393 - MLT1J LTR MaLR 0 511 354 234 299 31 55 chr3 87524290 87524417 -140000161 - MLT1J LTR MaLR -289 222 99 413 313 171 5 chr3 87525631 87525848 -139998730 - MIR SINE MIR -4 258 6 333 0 0 0 chr3 87525923 87525960 -139998618 + (TG)n Simple_repeat Simple_repeat 2 38 0 199 292 219 7 chr3 87526934 87527071 -139997507 + MIR SINE MIR 59 224 -38 183 162 0 0 chr3 87527297 87527334 -139997244 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 383 355 81 48 chr3 87527349 87528037 -139996541 - L2 LINE L2 -51 3221 2492 293 301 33 39 chr3 87529450 87529603 -139994975 - MLT1J LTR MaLR -35 476 325 274 171 24 110 chr3 87529624 87529706 -139994872 - MER58B DNA MER1_type -15 326 252 854 306 103 14 chr3 87530034 87530403 -139994175 - MLT1I LTR MaLR -7 402 1 614 223 199 14 chr3 87530673 87530715 -139993863 + L1MD2 LINE L1 6093 6126 -233 222 37 0 0 chr3 87530715 87530742 -139993836 + (CA)n Simple_repeat Simple_repeat 2 28 0 614 223 199 14 chr3 87530742 87530910 -139993668 + L1MD2 LINE L1 6126 6342 -17 1310 184 9 95 chr3 87531497 87531813 -139992765 + AluJo SINE Alu 1 289 -23 641 217 6 34 chr3 87531813 87531988 -139992590 - MER96B DNA MER1_type? -234 183 14 182 172 0 0 chr3 87532632 87532661 -139991917 + MIR SINE MIR 120 148 -60 369 105 48 9 chr3 87533048 87533153 -139991425 + (TA)n Simple_repeat Simple_repeat 1 109 0 29 47 0 0 chr3 87533906 87533949 -139990629 + AT_rich Low_complexity Low_complexity 1 43 0 1069 209 33 0 chr3 87534698 87534909 -139989669 + MER20 DNA MER1_type 1 218 -1 415 340 64 39 chr3 87535846 87536049 -139988529 + MLT1K LTR MaLR 14 221 -367 720 237 23 23 chr3 87536151 87536324 -139988254 + MLT1K LTR MaLR 400 572 -16 2421 88 0 0 chr3 87537133 87537439 -139987139 + AluY SINE Alu 1 306 -5 420 200 185 22 chr3 87538833 87538968 -139985610 - MER5B DNA MER1_type -3 175 19 384 240 302 0 chr3 87539001 87539130 -139985448 - MER5A DNA MER1_type -13 176 9 6511 146 26 16 chr3 87540257 87541530 -139983048 - L1MA2 LINE L1 0 6304 5045 2129 129 27 30 chr3 87541530 87541895 -139982683 + THE1B LTR MaLR 1 364 0 11561 91 10 1 chr3 87541895 87543461 -139981117 + THE1B-int LTR MaLR 1 1580 0 1920 158 19 46 chr3 87543462 87543835 -139980743 + THE1B LTR MaLR 2 364 0 6511 146 26 16 chr3 87543835 87544431 -139980147 - L1MA2 LINE L1 -1258 5046 4415 592 303 167 19 chr3 87544552 87545042 -139979536 + L2 LINE L2 2698 3263 -50 254 300 81 17 chr3 87545538 87545669 -139978909 + MIR SINE MIR 33 167 -63 363 321 172 30 chr3 87545820 87546122 -139978456 - L3 LINE CR1 -1 1576 1232 550 307 53 18 chr3 87546240 87546465 -139978113 + MIR SINE MIR 2 234 -28 356 278 26 26 chr3 87546502 87546617 -139977961 - L3 LINE CR1 -510 1067 953 2291 98 3 0 chr3 87547768 87548064 -139976514 + AluSp SINE Alu 1 297 -16 1784 157 0 57 chr3 87548585 87548916 -139975662 - AluJo SINE Alu 0 312 1 471 215 77 0 chr3 87548938 87549068 -139975510 + MIR SINE MIR 123 262 0 21 0 0 0 chr3 87551156 87551177 -139973401 + AT_rich Low_complexity Low_complexity 1 21 0 461 273 134 32 chr3 87552076 87552263 -139972315 + MIR SINE MIR 1 206 -56 345 346 45 6 chr3 87552334 87552490 -139972088 + MIR SINE MIR 48 209 -53 1189 214 38 19 chr3 87552680 87552942 -139971636 + AluJb SINE Alu 1 267 -45 2180 116 3 7 chr3 87552957 87553258 -139971320 + AluSg SINE Alu 1 300 -10 2144 140 27 30 chr3 87553351 87553716 -139970862 + THE1B LTR MaLR 1 364 0 296 239 174 43 chr3 87553946 87554084 -139970494 - MLT1K LTR MaLR -26 562 407 226 333 10 0 chr3 87555227 87555323 -139969255 - Charlie8 DNA MER1_type -2202 215 119 482 273 29 54 chr3 87555665 87555943 -139968635 - L1ME LINE L1 -316 5805 5535 22 35 0 0 chr3 87556018 87556047 -139968531 + AT_rich Low_complexity Low_complexity 1 29 0 1236 169 91 20 chr3 87556759 87557013 -139967565 + AluJb SINE Alu 35 306 -6 551 273 165 37 chr3 87557247 87557813 -139966765 - L2 LINE L2 0 3313 2398 1914 255 20 62 chr3 87558193 87558856 -139965722 + MER92B LTR ERV1 1 635 -1 547 271 96 36 chr3 87558899 87559150 -139965428 - L2 LINE L2 0 3313 3048 24 0 0 0 chr3 87559751 87559775 -139964803 + AT_rich Low_complexity Low_complexity 1 24 0 1548 185 61 6 chr3 87559936 87560266 -139964312 - MER7A DNA MER2_type 0 346 1 23 33 0 0 chr3 87561195 87561225 -139963353 + AT_rich Low_complexity Low_complexity 1 30 0 504 348 46 76 chr3 87561773 87562141 -139962437 - L2 LINE L2 -2 3270 2914 21 0 0 0 chr3 87562502 87562523 -139962055 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 87562755 87562776 -139961802 + AT_rich Low_complexity Low_complexity 1 21 0 202 211 0 0 chr3 87563036 87563074 -139961504 + A-rich Low_complexity Low_complexity 1 38 0 343 198 99 0 chr3 87563093 87563184 -139961394 - MER53 DNA DNA -89 100 1 2204 131 0 0 chr3 87564644 87564956 -139959622 + AluSx SINE Alu 1 312 0 265 287 82 16 chr3 87565151 87565273 -139959305 + MIR SINE MIR 50 179 -83 240 350 10 0 chr3 87565483 87565580 -139958998 - MIR SINE MIR -15 247 150 1793 156 0 11 chr3 87565589 87565864 -139958714 + AluJo SINE Alu 11 282 -30 516 316 13 7 chr3 87565894 87566049 -139958529 - MIR SINE MIR -104 158 3 499 234 9 0 chr3 87566609 87566720 -139957858 - L1MD1 LINE L1 -85 6157 6046 2085 207 63 14 chr3 87566721 87567166 -139957412 + LTR53 LTR ERVL 1 467 -52 3756 186 42 3 chr3 87567200 87568010 -139956568 - L1MD1 LINE L1 -192 6050 5210 942 151 0 0 chr3 87568201 87568340 -139956238 + AluSg/x SINE Alu 135 273 -37 336 202 47 0 chr3 87568362 87568458 -139956120 + MIR3 SINE MIR 99 201 -7 451 264 36 75 chr3 87568710 87568935 -139955643 + MIR SINE MIR 45 260 -2 2229 135 8 8 chr3 87568970 87569325 -139955253 + THE1A LTR MaLR 1 355 0 22 35 0 0 chr3 87570414 87570443 -139954135 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr3 87572117 87572137 -139952441 + (TA)n Simple_repeat Simple_repeat 2 21 0 350 291 153 30 chr3 87573401 87573604 -139950974 - MIR SINE MIR -14 248 21 213 309 29 0 chr3 87573846 87573914 -139950664 + MIR SINE MIR 14 83 -179 298 226 60 0 chr3 87573977 87574061 -139950517 + L1ME3A LINE L1 6058 6146 -24 271 127 32 0 chr3 87575277 87575340 -139949238 + (TG)n Simple_repeat Simple_repeat 2 66 0 21 36 0 0 chr3 87575433 87575461 -139949117 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 87575967 87575995 -139948583 + AT_rich Low_complexity Low_complexity 1 28 0 353 263 13 0 chr3 87576117 87576193 -139948385 + L2 LINE L2 3235 3311 -2 356 325 117 12 chr3 87576205 87576368 -139948210 - MIR SINE MIR -70 192 13 1250 219 38 33 chr3 87577452 87577881 -139946697 - MLT2B1 LTR ERVL -43 477 1 450 228 22 0 chr3 87578248 87578340 -139946238 - MER81 DNA DNA 0 114 21 796 229 165 4 chr3 87578364 87578630 -139945948 - MER5C DNA MER1_type -1 323 15 228 358 26 20 chr3 87578978 87579129 -139945449 + MIR SINE MIR 41 192 -70 2125 101 7 36 chr3 87579130 87579436 -139945142 - AluSp SINE Alu -16 297 1 182 103 0 26 chr3 87579522 87579561 -139945017 + (TA)n Simple_repeat Simple_repeat 2 39 0 712 274 41 35 chr3 87580149 87580463 -139944115 - L2 LINE L2 -356 2958 2643 613 191 78 0 chr3 87580778 87580919 -139943659 + MER63A DNA MER1_type 59 210 0 2066 149 20 13 chr3 87581941 87582331 -139942247 - L1M2 LINE L1 -560 5731 5339 772 119 13 38 chr3 87582352 87582511 -139942067 + L1MA7 LINE L1 6135 6289 -2 1888 142 106 6 chr3 87583661 87584000 -139940578 - MER83C LTR ERV1 0 373 1 237 393 17 17 chr3 87584270 87584387 -139940191 + L2 LINE L2 3155 3271 -1 397 330 140 54 chr3 87584430 87585149 -139939429 - L2 LINE L2 -198 3074 2302 383 303 6 25 chr3 87585246 87585408 -139939170 - L2 LINE L2 -1022 2292 2134 196 293 245 9 chr3 87585469 87585512 -139939066 - MER5A DNA MER1_type -22 167 135 1635 125 6 144 chr3 87585512 87585865 -139938713 + AluY SINE Alu 1 304 -7 196 293 245 9 chr3 87585865 87585927 -139938651 - MER5A DNA MER1_type -54 135 37 444 292 50 10 chr3 87585994 87586196 -139938382 + L1ME LINE L1 5540 5749 -372 22 0 0 0 chr3 87586654 87586676 -139937902 + AT_rich Low_complexity Low_complexity 1 22 0 724 160 8 0 chr3 87586855 87586980 -139937598 + L1MA2 LINE L1 6179 6304 0 22 56 0 0 chr3 87587297 87587333 -139937245 + AT_rich Low_complexity Low_complexity 1 36 0 662 149 45 13 chr3 87587335 87587528 -139937050 + ORSL DNA AcHobo 25 275 0 995 174 0 98 chr3 87587593 87587828 -139936750 + AluJo SINE Alu 85 296 -16 235 263 99 35 chr3 87588105 87588276 -139936302 + L1ME LINE L1 5406 5587 -577 251 309 69 17 chr3 87588905 87589080 -139935498 - Charlie8 DNA MER1_type -2137 280 97 470 226 46 121 chr3 87589083 87589312 -139935266 - LTR37A LTR ERV1 0 426 244 2046 125 0 17 chr3 87589312 87589607 -139934971 + AluY SINE Alu 1 290 -21 470 226 46 121 chr3 87589607 87589815 -139934763 - LTR37A LTR ERV1 -182 244 22 1544 181 133 68 chr3 87590170 87590828 -139933750 + LTR48 LTR ERV1 1 642 -2 584 194 90 0 chr3 87592297 87592431 -139932147 - MER20 DNA MER1_type -4 215 70 * 2418 179 7 57 chr3 87592422 87592986 -139931592 + MER87 LTR ERV1 6 541 0 203 171 0 0 chr3 87595241 87595282 -139929296 + (TA)n Simple_repeat Simple_repeat 1 41 0 1493 179 106 3 chr3 87595293 87595595 -139928983 - MLT1A1 LTR MaLR -1 364 32 1784 186 23 10 chr3 87695652 87696038 -139828540 - L1 LINE L1 -1439 4707 4317 898 247 32 12 chr3 87696240 87696491 -139828087 + MIR SINE MIR 6 261 -1 236 298 158 12 chr3 87696578 87696749 -139827829 - MIR SINE MIR -6 256 61 217 272 11 109 chr3 87697111 87697203 -139827375 + L2 LINE L2 3231 3313 0 348 307 73 21 chr3 87697521 87697713 -139826865 - MIR SINE MIR -7 255 54 1074 255 86 31 chr3 87697824 87697982 -139826596 + L1M4 LINE L1 4160 4308 -1838 2400 84 0 7 chr3 87697982 87698290 -139826288 - AluY SINE Alu -5 306 1 1074 255 86 31 chr3 87698290 87698609 -139825969 + L1M4 LINE L1 4308 4663 -1483 655 206 96 62 chr3 87698742 87698908 -139825670 + L1M4 LINE L1 4692 4868 -1278 1579 174 89 0 chr3 87698908 87699189 -139825389 - AluSx SINE Alu -6 306 1 655 206 96 62 chr3 87699189 87699231 -139825347 + L1M4 LINE L1 4868 4907 -1239 185 271 0 0 chr3 87699901 87699949 -139824629 - MIR3 SINE MIR -28 180 133 333 316 53 7 chr3 87700026 87700178 -139824400 + MIR SINE MIR 9 167 -95 347 324 9 36 chr3 87700240 87700351 -139824227 - L2 LINE L2 0 3313 3206 187 329 89 41 chr3 87700365 87700511 -139824067 - MIR3 SINE MIR -54 154 2 1184 136 7 81 chr3 87700595 87700867 -139823711 - L1MC3 LINE L1 -11 7774 7523 * 1809 233 66 67 chr3 87700855 87701411 -139823167 - L1M4 LINE L1 -744 5402 4846 1779 142 89 0 chr3 87701411 87701692 -139822886 + AluSx SINE Alu 1 306 -6 1809 233 66 67 chr3 87701692 87701882 -139822696 - L1M4 LINE L1 -1300 4846 4657 2980 82 3 0 chr3 87702240 87702594 -139821984 - THE1A LTR MaLR 0 355 1 12696 87 5 2 chr3 87702595 87704169 -139820409 - THE1A-int LTR MaLR -1 1579 1 2753 111 6 0 chr3 87704169 87704522 -139820056 - THE1A LTR MaLR 0 355 1 390 324 27 0 chr3 87704539 87704650 -139819928 + MIR SINE MIR 36 149 -113 824 80 0 0 chr3 87704652 87704752 -139819826 + AluS SINE Alu 1 100 -213 397 241 186 16 chr3 87704868 87705141 -139819437 - L2 LINE L2 -193 3120 2803 234 262 36 24 chr3 87705352 87705436 -139819142 + MIR SINE MIR 31 115 -147 216 162 0 0 chr3 87705709 87705746 -139818832 + (CAATT)n Simple_repeat Simple_repeat 3 39 0 1276 204 5 0 chr3 87705874 87706094 -139818484 - MER58A DNA MER1_type -3 221 1 389 264 48 79 chr3 87706129 87706378 -139818200 - MIR SINE MIR -11 251 3 858 292 126 31 chr3 87706801 87707246 -139817332 + L2 LINE L2 2827 3313 0 530 267 53 43 chr3 87707267 87707454 -139817124 - MIR SINE MIR -11 251 63 379 82 0 0 chr3 87708576 87708625 -139815953 + Alu SINE Alu 243 291 -9 562 249 124 0 chr3 87708948 87709117 -139815461 + MIR SINE MIR 67 256 -6 237 284 34 23 chr3 87710445 87710533 -139814045 + MER5A DNA MER1_type 54 142 -47 354 391 34 6 chr3 87711983 87712162 -139812416 + L2 LINE L2 2912 3095 -177 1548 182 59 102 chr3 87712322 87712713 -139811865 + MLT1A2 LTR MaLR 1 374 0 258 250 12 12 chr3 87712793 87712877 -139811701 + L1ME4a LINE L1 5654 5737 -384 354 279 75 58 chr3 87712945 87713171 -139811407 + L1ME4a LINE L1 5866 6095 -26 500 237 62 40 chr3 87714297 87714474 -139810104 - MIR SINE MIR 0 262 82 23 33 0 0 chr3 87714794 87714824 -139809754 + AT_rich Low_complexity Low_complexity 1 30 0 261 247 37 0 chr3 87716232 87716313 -139808265 - MLT1I LTR MaLR -8 401 318 3753 138 21 67 chr3 87716816 87717533 -139807045 - L1MA8 LINE L1 -3 6288 5605 1618 167 29 22 chr3 87717824 87718135 -139806443 + MER58B DNA MER1_type 29 341 0 572 174 25 5 chr3 87718461 87718656 -139805922 + AluJo SINE Alu 14 309 -3 517 274 149 33 chr3 87720087 87720302 -139804276 + MIR SINE MIR 20 259 -3 2296 66 24 0 chr3 87720921 87721210 -139803368 + AluY SINE Alu 1 296 -15 428 234 78 21 chr3 87721284 87721425 -139803153 - MIR SINE MIR 0 262 114 249 267 95 60 chr3 87721700 87721816 -139802762 + MLT1J2 LTR MaLR 117 236 -214 1327 179 79 65 chr3 87721838 87722128 -139802450 + AluJo SINE Alu 3 296 -6 784 166 159 12 chr3 87722190 87722353 -139802225 + AluJo SINE Alu 113 299 -13 562 278 16 42 chr3 87722353 87722544 -139802034 + MLT1J2 LTR MaLR 265 450 0 180 0 0 0 chr3 87722893 87722913 -139801665 + (T)n Simple_repeat Simple_repeat 1 20 0 347 45 45 15 chr3 87723132 87723199 -139801379 + (CAAAA)n Simple_repeat Simple_repeat 3 71 0 554 201 86 29 chr3 87723810 87723949 -139800629 + MLT1L LTR MaLR 437 583 -32 324 246 62 108 chr3 87724342 87724630 -139799948 - L1MEd LINE L1 -5295 824 550 306 315 38 43 chr3 87724702 87724738 -139799840 - MIR SINE MIR -15 247 212 2047 138 18 38 chr3 87724738 87725079 -139799499 - MER1B DNA MER1_type -3 334 1 306 315 38 43 chr3 87725079 87725226 -139799352 - MIR SINE MIR -50 212 65 352 357 85 73 chr3 87726043 87726371 -139798207 - L2 LINE L2 -11 3261 2930 942 271 14 0 chr3 87726443 87726664 -139797914 - MIR SINE MIR 0 262 39 283 302 0 10 chr3 87727483 87727579 -139796999 + CT-rich Low_complexity Low_complexity 1 95 0 315 161 0 0 chr3 87728290 87728346 -139796232 + CT-rich Low_complexity Low_complexity 1 56 0 279 302 54 78 chr3 87729168 87729190 -139795388 + L2 LINE L2 3134 3155 -117 574 312 16 0 chr3 87729190 87729376 -139795202 - MER5A DNA MER1_type 0 189 1 279 302 54 78 chr3 87729376 87729482 -139795096 + L2 LINE L2 3155 3259 -13 1333 271 30 5 chr3 87729500 87729872 -139794706 - L2 LINE L2 -22 3291 2911 617 73 0 0 chr3 87729872 87729954 -139794624 + THE1C LTR MaLR 1 82 -293 234 217 225 70 chr3 87730769 87730898 -139793680 - MIR SINE MIR -36 226 78 565 298 43 15 chr3 87731099 87731343 -139793235 - MIR SINE MIR -11 251 2 356 278 0 9 chr3 87731690 87731798 -139792780 + MLT1K LTR MaLR 2 108 -480 572 252 26 0 chr3 87731808 87731963 -139792615 + MLT1K LTR MaLR 422 580 -8 1893 78 4 4 chr3 87732518 87732762 -139791816 + AluSp SINE Alu 62 305 -8 1561 283 85 53 chr3 87732865 87733387 -139791191 + L2 LINE L2 2209 2713 -600 1741 174 61 127 chr3 87733387 87733980 -139790598 + MLT2B3 LTR ERVL 1 554 0 1561 283 85 53 chr3 87733980 87734522 -139790056 + L2 LINE L2 2713 3313 0 409 297 91 47 chr3 87734652 87734904 -139789674 - MIR SINE MIR -3 259 6 1038 124 154 10 chr3 87735321 87735522 -139789056 + MER30 DNA MER1_type 1 230 0 274 213 33 0 chr3 87735832 87735893 -139788685 + MER91B DNA MER1_type 1 63 -127 205 330 23 0 chr3 87735956 87736044 -139788534 + MIR SINE MIR 117 206 -56 255 61 0 0 chr3 87736290 87736323 -139788255 + (TAAAA)n Simple_repeat Simple_repeat 5 37 0 791 217 75 38 chr3 87737485 87737725 -139786853 + MIR SINE MIR 2 250 -12 1799 149 0 41 chr3 87737799 87738114 -139786464 + AluJo SINE Alu 1 302 -10 959 204 6 0 chr3 87738223 87738399 -139786179 + MER58B DNA MER1_type 164 340 -1 1809 130 68 7 chr3 87739270 87739562 -139785016 + AluSq SINE Alu 1 310 -3 1354 194 15 0 chr3 87739579 87739847 -139784731 - MER58B DNA MER1_type -28 313 42 272 303 0 45 chr3 87740199 87740288 -139784290 + L2 LINE L2 3229 3313 0 347 284 198 0 chr3 87740441 87740515 -139784063 + L2 LINE L2 3134 3192 -80 996 205 52 5 chr3 87740515 87740725 -139783853 - MER58A DNA MER1_type -3 221 2 347 284 198 0 chr3 87740725 87740766 -139783812 + L2 LINE L2 3192 3272 0 219 301 97 11 chr3 87741004 87741097 -139783481 + MIR SINE MIR 149 249 -13 368 226 90 8 chr3 87742540 87742673 -139781905 - Charlie8 DNA MER1_type -1926 491 348 240 264 0 0 chr3 87742872 87742925 -139781653 + MIR SINE MIR 210 262 0 1755 193 54 24 chr3 87743238 87743648 -139780930 - MER63B DNA MER1_type 0 436 15 200 299 78 39 chr3 87743773 87743850 -139780728 + L2 LINE L2 3150 3229 -43 856 174 112 23 chr3 87745070 87745375 -139779203 + Charlie5 DNA MER1_type 755 1086 -1526 2335 158 71 9 chr3 87746988 87747425 -139777153 + MLT2C2 LTR ERVL 1 464 0 503 353 33 5 chr3 87747481 87747665 -139776913 - MIR SINE MIR -70 192 4 463 275 42 80 chr3 87748912 87749174 -139775404 + MLT1J LTR MaLR 216 467 -44 1418 18 0 18 chr3 87749461 87749630 -139774948 - L1PA3 LINE L1 -1 6154 5989 232 376 65 0 chr3 87751587 87751680 -139772898 - L2 LINE L2 -30 3283 3185 2685 107 0 3 chr3 87751936 87752301 -139772277 + THE1B LTR MaLR 1 364 0 491 240 23 104 chr3 87752566 87752787 -139771791 - L2 LINE L2 0 3313 3111 395 302 0 0 chr3 87752798 87752904 -139771674 - MER94 DNA DNA -2 132 27 1106 263 49 52 chr3 87752987 87753573 -139771005 - L2 LINE L2 -246 3067 2481 1841 140 156 0 chr3 87753703 87754018 -139770560 - THE1B LTR MaLR 0 364 1 289 272 40 56 chr3 87755910 87756035 -139768543 + MIR SINE MIR 79 201 -61 778 188 0 0 chr3 87756514 87756642 -139767936 - FLAM_C SINE Alu -5 128 1 323 271 47 0 chr3 87756750 87756835 -139767743 - L1MC4 LINE L1 -1339 6703 6615 276 268 0 0 chr3 87756836 87756918 -139767660 + (CATATA)n Simple_repeat Simple_repeat 6 87 0 249 135 19 19 chr3 87757192 87757244 -139767334 + THE1-int LTR MaLR 7 58 -1522 307 301 208 33 chr3 87757859 87758042 -139766536 + MIR SINE MIR 47 261 -1 513 233 199 14 chr3 87758678 87758824 -139765754 - MER5A DNA MER1_type -1 188 16 294 310 82 44 chr3 87758871 87759029 -139765549 - MIR SINE MIR -78 184 21 301 298 123 0 chr3 87759267 87759381 -139765197 - L2 LINE L2 -5 3308 3181 199 238 0 0 chr3 87760141 87760183 -139764395 - MER5A DNA MER1_type -139 50 9 265 295 32 11 chr3 87760216 87760311 -139764267 + MER5A DNA MER1_type 27 123 -66 34 42 0 0 chr3 87761608 87761656 -139762922 + AT_rich Low_complexity Low_complexity 1 48 0 202 359 66 47 chr3 87762399 87762505 -139762073 - L2 LINE L2 -16 3256 3149 352 276 0 37 chr3 87762697 87762775 -139761803 - MER94 DNA DNA -5 129 57 2244 135 0 0 chr3 87762775 87763087 -139761491 - AluSx SINE Alu 0 312 1 352 276 0 37 chr3 87763087 87763142 -139761436 - MER94 DNA DNA -77 57 1 21 0 0 0 chr3 87763353 87763374 -139761204 + AT_rich Low_complexity Low_complexity 1 21 0 230 308 89 32 chr3 87763531 87763778 -139760800 - L1ME LINE L1 -206 5915 5655 485 327 74 5 chr3 87763930 87764132 -139760446 + L2 LINE L2 2564 2779 -535 2847 94 0 39 chr3 87764133 87764253 -139760325 + L1PA10 LINE L1 5710 5833 -358 2279 94 0 0 chr3 87764253 87764550 -139760028 + AluY SINE Alu 1 297 -14 2847 94 0 39 chr3 87764550 87764929 -139759649 + L1PA10 LINE L1 5833 6191 0 225 275 94 31 chr3 87764943 87765103 -139759475 + L2 LINE L2 2806 2975 -338 309 338 0 39 chr3 87765126 87765280 -139759298 + L2 LINE L2 3150 3297 -16 467 311 76 13 chr3 87766130 87766355 -139758223 + MIR SINE MIR 15 253 -9 1154 55 6 24 chr3 87766752 87766916 -139757662 + AluY SINE Alu 5 165 -146 909 168 99 40 chr3 87767027 87767154 -139757424 - MER20 DNA MER1_type -5 214 69 369 62 0 0 chr3 87767154 87767202 -139757376 + (CA)n Simple_repeat Simple_repeat 2 49 0 909 168 99 40 chr3 87767202 87767276 -139757302 - MER20 DNA MER1_type -150 69 1 1615 147 30 85 chr3 87767437 87767838 -139756740 + L1MB8 LINE L1 5545 5923 -255 454 202 48 0 chr3 87767838 87767922 -139756656 + MER7A DNA MER2_type 1 86 -260 2096 171 56 0 chr3 87767948 87768341 -139756237 + MSTA LTR MaLR 14 428 0 1416 165 20 0 chr3 87768342 87768596 -139755982 + MER7A DNA MER2_type 79 337 0 923 192 37 33 chr3 87768596 87768841 -139755737 + L1MB8 LINE L1 5922 6167 -11 1569 120 107 41 chr3 87769420 87769737 -139754841 - THE1A LTR MaLR -17 338 1 1254 291 281 20 chr3 87769737 87770685 -139753893 - L2 LINE L2 -1417 1897 703 1795 78 0 0 chr3 87770760 87770978 -139753600 - AluY SINE Alu -70 241 24 495 227 34 17 chr3 87771292 87771411 -139753167 - MLT1K LTR MaLR -75 513 393 590 321 19 14 chr3 87771536 87771748 -139752830 - MLT1K LTR MaLR -371 217 5 1516 264 51 28 chr3 87771902 87772678 -139751900 - L2 LINE L2 -2 3311 2508 627 285 72 21 chr3 87773121 87773356 -139751222 + MIR SINE MIR 2 248 -14 816 236 44 8 chr3 87773411 87773661 -139750917 + L1MC4a LINE L1 7049 7307 -501 * 1001 220 62 7 chr3 87773660 87773933 -139750645 + L1MD3 LINE L1 7692 7979 -16 198 374 109 17 chr3 87774313 87774551 -139750027 - L2 LINE L2 -1122 2192 1933 188 259 134 36 chr3 87774736 87774848 -139749730 - L2 LINE L2 -1 3312 3190 1935 176 18 9 chr3 87774849 87775190 -139749388 + MER2 DNA MER2_type 1 344 0 425 211 184 0 chr3 87776067 87776176 -139748402 + MIR SINE MIR 57 185 -77 603 267 105 36 chr3 87776359 87776692 -139747886 + MLT1J LTR MaLR 156 511 0 2288 111 3 13 chr3 87777059 87777375 -139747203 - AluSq SINE Alu 0 313 1 486 228 81 0 chr3 87777922 87778058 -139746520 - Charlie8 DNA MER1_type -2244 173 27 247 300 11 44 chr3 87778131 87778221 -139746357 - L2 LINE L2 0 3272 3186 1964 167 3 0 chr3 87778366 87778677 -139745901 + AluJb SINE Alu 1 312 0 1871 216 53 31 chr3 87778764 87779251 -139745327 + MLT1F LTR MaLR 44 541 -1 453 316 86 34 chr3 87779379 87779613 -139744965 + MIR SINE MIR 15 260 -2 21 36 0 0 chr3 87780317 87780345 -139744233 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 87780401 87780422 -139744156 + AT_rich Low_complexity Low_complexity 1 21 0 2200 118 7 0 chr3 87780432 87780738 -139743840 - AluSc SINE Alu -1 308 1 198 361 12 0 chr3 87780977 87781060 -139743518 - MIR SINE MIR -147 115 32 577 212 22 62 chr3 87781581 87781675 -139742903 + LTR33 LTR ERVL 1 86 -435 935 176 21 16 chr3 87781675 87781862 -139742716 + MER5A DNA MER1_type 1 188 -1 577 212 22 62 chr3 87781862 87781946 -139742632 + LTR33 LTR ERVL 86 172 -349 243 0 0 0 chr3 87782005 87782032 -139742546 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 243 260 14 0 chr3 87782058 87782131 -139742447 + LTR33 LTR ERVL 448 521 0 1786 181 87 52 chr3 87782278 87782763 -139741815 + MLT1D LTR MaLR 2 503 -2 577 292 99 21 chr3 87782962 87783205 -139741373 - MIR SINE MIR 0 262 1 348 24 0 0 chr3 87783425 87783466 -139741112 + (TG)n Simple_repeat Simple_repeat 2 42 0 1980 131 17 34 chr3 87783569 87783757 -139740821 - MER2 DNA MER2_type -1 344 163 1755 153 67 37 chr3 87783757 87784084 -139740494 - MER1B DNA MER1_type 0 337 1 1980 131 17 34 chr3 87784084 87784245 -139740333 - MER2 DNA MER2_type -182 163 1 1711 171 7 4 chr3 87784618 87784898 -139739680 + AluJo SINE Alu 1 281 -31 1073 170 63 0 chr3 87785018 87785241 -139739337 + L1MD3 LINE L1 7759 7995 0 282 320 54 20 chr3 87785609 87785756 -139738822 + L2 LINE L2 3162 3313 0 237 284 8 94 chr3 87786115 87786242 -139738336 - L2 LINE L2 -58 3255 3140 223 275 77 66 chr3 87786460 87786551 -139738027 - L2 LINE L2 0 3272 3181 348 24 0 0 chr3 87787271 87787312 -139737266 + (CAT)n Simple_repeat Simple_repeat 2 42 0 3510 196 24 0 chr3 87787370 87788090 -139736488 - L1MB3 LINE L1 -1 6182 5446 486 222 67 44 chr3 87788096 87788231 -139736347 - MIR SINE MIR -112 150 13 467 225 152 7 chr3 87788248 87788386 -139736192 - MIR SINE MIR -4 258 101 943 149 117 5 chr3 87788386 87788574 -139736004 + MER2 DNA MER2_type 1 209 -136 341 351 15 8 chr3 87788640 87788774 -139735804 - MIR SINE MIR -126 136 2 533 333 5 5 chr3 87789442 87789628 -139734950 + MIR SINE MIR 13 198 -64 904 178 76 20 chr3 87790386 87790583 -139733995 - MER3 DNA MER1_type -1 208 1 1126 270 116 37 chr3 87790702 87791187 -139733391 + MLT1G1 LTR MaLR 73 595 0 1476 152 69 92 chr3 87792439 87792788 -139731790 + MLT2B3 LTR ERVL 3 343 -211 335 293 125 53 chr3 87793154 87793475 -139731103 + LTR16C LTR ERVL 89 432 -59 4858 237 68 21 chr3 87793479 87795252 -139729326 + L1M4 LINE L1 2348 4203 -1943 1184 311 66 19 chr3 87795353 87795880 -139728698 + MLT1K LTR MaLR 22 573 -15 701 354 47 36 chr3 87795998 87796116 -139728462 + L2 LINE L2 2189 2304 -1010 2753 175 15 38 chr3 87796116 87796643 -139727935 - MLT2B2 LTR ERVL 0 515 1 701 354 47 36 chr3 87796643 87797019 -139727559 + L2 LINE L2 2304 2688 -626 3257 75 18 5 chr3 87798053 87798491 -139726087 + MLT2A1 LTR ERVL 1 444 0 264 244 91 36 chr3 87798849 87799070 -139725508 + HAL1b LINE L1 89 321 -1027 1699 172 14 11 chr3 87799119 87799404 -139725174 - AluJo SINE Alu -26 286 1 282 207 0 0 chr3 87799480 87799538 -139725040 - MLT1L LTR MaLR 0 615 558 268 258 15 0 chr3 87799550 87799616 -139724962 + MER5A DNA MER1_type 9 75 -114 225 94 0 0 chr3 87800302 87800334 -139724244 + (A)n Simple_repeat Simple_repeat 1 32 0 331 272 114 0 chr3 87800337 87800451 -139724127 + MER5A DNA MER1_type 61 187 -2 479 232 51 14 chr3 87800451 87800481 -139724097 - MLT1L LTR MaLR -52 563 536 477 254 57 51 chr3 87800481 87800658 -139723920 + MER5B DNA MER1_type 1 178 0 479 232 51 14 chr3 87800658 87800765 -139723813 - MLT1L LTR MaLR -79 536 421 292 237 21 32 chr3 87800788 87800881 -139723697 + CT-rich Low_complexity Low_complexity 3 94 0 27 81 0 0 chr3 87800972 87801034 -139723544 + AT_rich Low_complexity Low_complexity 1 62 0 298 119 0 0 chr3 87801079 87801121 -139723457 - MIR3 SINE MIR -51 157 116 245 163 20 0 chr3 87801508 87801557 -139723021 - L2 LINE L2 -269 3044 2995 1159 200 58 13 chr3 87801857 87802167 -139722411 + MER33 DNA MER1_type 1 324 0 228 250 17 0 chr3 87802340 87802400 -139722178 + (CTA)n Simple_repeat Simple_repeat 1 61 0 316 295 58 29 chr3 87802438 87802509 -139722069 - MIR3 SINE MIR -32 230 162 1935 187 8 6 chr3 87802509 87802873 -139721705 + MLT1A1 LTR MaLR 1 365 0 316 295 58 29 chr3 87802873 87803030 -139721548 - MIR3 SINE MIR -100 162 2 605 313 149 3 chr3 87803396 87803712 -139720866 + L2 LINE L2 2948 3309 -4 451 263 0 0 chr3 87803866 87803961 -139720617 + MIR SINE MIR 60 154 -108 663 297 53 41 chr3 87804095 87804506 -139720072 - LTR16C LTR ERVL 0 491 76 1019 248 25 0 chr3 87805244 87805518 -139719060 + MER58B DNA MER1_type 60 340 -1 289 203 76 25 chr3 87805519 87805598 -139718980 + MIR SINE MIR 88 170 -92 651 276 92 60 chr3 87805613 87805675 -139718903 + MIR SINE MIR 1 60 -202 2127 117 0 0 chr3 87805675 87805949 -139718629 + AluSx SINE Alu 22 295 -17 651 276 92 60 chr3 87805949 87806136 -139718442 + MIR SINE MIR 60 258 -4 978 224 29 37 chr3 87806278 87806523 -139718055 + MIR SINE MIR 20 262 0 251 229 0 16 chr3 87806583 87806644 -139717934 + MER113 DNA MER1_type? 462 521 0 1987 150 3 3 chr3 87806705 87807005 -139717573 - AluSx SINE Alu -12 300 1 459 304 29 22 chr3 87808657 87808795 -139715783 + L2 LINE L2 3132 3270 -2 485 127 13 0 chr3 87810772 87810851 -139713727 + MADE1 DNA Mariner 1 80 0 1046 310 140 11 chr3 87810955 87811250 -139713328 + L2 LINE L2 2407 2662 -651 6557 114 46 60 chr3 87811250 87811893 -139712685 - Tigger3b DNA MER2_type -1798 1230 612 2104 119 3 0 chr3 87811893 87812178 -139712400 - AluSq SINE Alu -22 291 6 6557 114 46 60 chr3 87812178 87812782 -139711796 - Tigger3b DNA MER2_type -2416 612 1 1046 310 140 11 chr3 87812782 87813302 -139711276 + L2 LINE L2 2662 3313 0 301 355 19 9 chr3 87813513 87813620 -139710958 + MIR SINE MIR 8 115 -147 349 341 16 0 chr3 87814029 87814155 -139710423 + MIR SINE MIR 111 238 -24 360 330 199 14 chr3 87814171 87814517 -139710061 - L3 LINE CR1 -478 1099 690 2305 83 7 13 chr3 87817111 87817413 -139707165 + AluY SINE Alu 1 300 -11 331 328 57 0 chr3 87817468 87817590 -139706988 - MER5A DNA MER1_type -54 135 7 341 322 185 5 chr3 87817624 87817829 -139706749 + MIR SINE MIR 20 261 -1 694 198 0 0 chr3 87818371 87818497 -139706081 + MER45A DNA AcHobo 53 178 0 2285 117 7 0 chr3 87818561 87818869 -139705709 - AluSq SINE Alu -3 310 1 242 303 114 92 chr3 87818874 87819102 -139705476 - L2 LINE L2 -570 2744 2512 189 207 52 52 chr3 87820673 87820731 -139703847 + MIR SINE MIR 85 142 -66 21 0 0 0 chr3 87821119 87821140 -139703438 + AT_rich Low_complexity Low_complexity 1 21 0 1093 175 24 0 chr3 87821696 87821942 -139702636 - Charlie5 DNA MER1_type -28 2584 2333 251 182 260 0 chr3 87821997 87822074 -139702504 - Charlie5 DNA MER1_type -230 2382 2286 * 2715 175 74 3 chr3 87822068 87822719 -139701859 - Charlie5 DNA MER1_type -467 2145 1449 8380 133 15 56 chr3 87822819 87824387 -139700191 + THE1C-int LTR MaLR 78 1580 0 1923 130 60 41 chr3 87824387 87824755 -139699823 + THE1C LTR MaLR 1 375 0 614 287 147 0 chr3 87824814 87825086 -139699492 + MLT1I LTR MaLR 98 409 0 406 349 49 15 chr3 87825447 87825711 -139698867 - L1MEc LINE L1 -4273 2123 1851 643 301 78 11 chr3 87825741 87826174 -139698404 - L1MEc LINE L1 -4471 1759 1331 256 235 26 35 chr3 87826269 87826384 -139698194 + L1ME LINE L1 5129 5242 -904 201 74 0 0 chr3 87826552 87826579 -139697999 + (TG)n Simple_repeat Simple_repeat 2 28 0 325 189 32 21 chr3 87826601 87826696 -139697882 + L1ME LINE L1 5237 5332 -814 507 285 41 14 chr3 87826698 87826919 -139697659 + L1ME LINE L1 5378 5604 -560 255 240 70 23 chr3 87826976 87827105 -139697473 - L1ME LINE L1 -367 5799 5665 251 216 102 0 chr3 87827108 87827196 -139697382 + L1MC4a LINE L1 5500 5596 -525 266 277 135 61 chr3 87828009 87828305 -139696273 - L2 LINE L2 -1 3312 2995 601 345 14 5 chr3 87828887 87829107 -139695471 - MIR SINE MIR -12 250 29 2224 97 4 0 chr3 87830501 87830803 -139693775 - AluSg SINE Alu 0 303 1 1454 221 63 11 chr3 87830835 87831445 -139693133 - L1MC/D LINE L1 -393 5771 5127 459 290 20 20 chr3 87831973 87832221 -139692357 + L1MEc LINE L1 1296 1543 -4853 405 256 0 34 chr3 87834334 87834451 -139690127 - MER69A DNA AcHobo -64 113 1 340 297 0 0 chr3 87834572 87834683 -139689895 + L1MC4a LINE L1 5726 5836 -1972 269 210 32 26 chr3 87835143 87835311 -139689267 + L1M4 LINE L1 5219 5387 -769 714 241 116 60 chr3 87835311 87835785 -139688793 + L1M2b LINE L1 442 1100 -6109 8171 189 52 38 chr3 87835837 87839220 -139685358 + L1M2b LINE L1 1864 5291 -1917 778 201 106 0 chr3 87839323 87839512 -139685066 + MLT1F1 LTR MaLR 359 567 0 436 318 26 7 chr3 87839982 87840136 -139684442 + MLT1K LTR MaLR 300 456 -132 1759 268 173 25 chr3 87840526 87841591 -139682987 - L2 LINE L2 0 3313 2094 192 40 0 0 chr3 87842656 87842681 -139681897 + (CAA)n Simple_repeat Simple_repeat 2 26 0 589 281 94 5 chr3 87842684 87842876 -139681702 - MIR SINE MIR -20 242 34 1993 123 155 13 chr3 87843174 87843549 -139681029 + MSTA LTR MaLR 1 428 0 317 271 50 132 chr3 87843575 87843833 -139680745 - MIR SINE MIR -6 256 20 522 260 125 5 chr3 87844567 87844730 -139679848 + MER5A DNA MER1_type 4 189 0 1479 143 177 0 chr3 87844789 87845083 -139679495 + THE1C LTR MaLR 30 375 0 1833 159 29 0 chr3 87845108 87845385 -139679193 - AluJo SINE Alu -27 285 1 338 321 36 21 chr3 87845431 87845571 -139679007 - MIR3 SINE MIR -64 144 3 2482 75 0 3 chr3 87845764 87846072 -139678506 + AluY SINE Alu 3 309 -2 557 191 59 15 chr3 87846182 87846318 -139678260 - L1ME3A LINE L1 -1 6169 6028 786 215 11 26 chr3 87846380 87846571 -139678007 + Charlie8 DNA MER1_type 89 276 -2141 253 276 13 0 chr3 87846671 87846747 -139677831 + Charlie8 DNA MER1_type 2339 2415 -2 2290 211 107 68 chr3 87846825 87847590 -139676988 - MER21B LTR ERV1 -52 811 17 1962 183 34 3 chr3 87847765 87848143 -139676435 - MSTD LTR MaLR 0 396 7 4863 150 31 16 chr3 87848815 87850067 -139674511 + L1MB1 LINE L1 4902 6168 0 1158 120 31 5 chr3 87850071 87850263 -139674315 - L1PA15 LINE L1 -283 5882 5686 350 111 0 0 chr3 87850263 87850322 -139674256 + L1 LINE L1 4101 4159 -1987 349 343 24 12 chr3 87850450 87850619 -139673959 - MIR SINE MIR -17 245 75 1033 141 27 77 chr3 87852309 87852529 -139672049 + MER3 DNA MER1_type 1 209 0 403 200 47 12 chr3 87852534 87852619 -139671959 + L2 LINE L2 3177 3264 -8 2147 105 7 0 chr3 87853714 87854020 -139670558 - L1PA10 LINE L1 -3 6165 5858 191 260 100 0 chr3 87854577 87854627 -139669951 - L2 LINE L2 -4 3268 3214 342 350 21 14 chr3 87854763 87854906 -139669672 - L2 LINE L2 0 3313 3170 444 242 12 115 chr3 87854931 87855175 -139669403 + LTR67 LTR ERVL 6 224 -333 238 350 32 16 chr3 87855435 87855558 -139669020 - L2 LINE L2 -229 3043 2919 * 260 180 66 0 chr3 87855540 87855601 -139668977 - MIR SINE MIR -89 173 109 517 236 25 101 chr3 87855712 87855916 -139668662 - L1ME3A LINE L1 -5 6165 5986 2214 74 17 20 chr3 87855916 87856214 -139668364 - AluSg SINE Alu -13 297 1 517 236 25 101 chr3 87856214 87856285 -139668293 - L1ME3A LINE L1 -184 5986 5911 1464 238 21 3 chr3 87856295 87856678 -139667900 - L1ME3A LINE L1 -406 5756 5367 275 255 47 19 chr3 87858092 87858198 -139666380 + LTR67 LTR ERVL 449 557 0 649 316 79 20 chr3 87858869 87859928 -139664650 - L1ME3A LINE L1 -2911 3235 2114 351 354 46 8 chr3 87860197 87860327 -139664251 - L2 LINE L2 0 3272 3138 540 193 0 0 chr3 87860483 87860571 -139664007 + FLAM_A SINE Alu 32 119 -23 781 298 42 24 chr3 87860608 87860647 -139663931 + MLT1J LTR MaLR 20 57 -454 2016 126 73 22 chr3 87860647 87861004 -139663574 - THE1C LTR MaLR 0 375 1 781 298 42 24 chr3 87861004 87861253 -139663325 + MLT1J LTR MaLR 57 313 -198 234 0 0 0 chr3 87861502 87861528 -139663050 + (A)n Simple_repeat Simple_repeat 1 26 0 469 269 64 7 chr3 87861532 87861673 -139662905 - MER5A DNA MER1_type -38 151 3 * 624 308 183 15 chr3 87861673 87861998 -139662580 - L2 LINE L2 -369 2945 2565 276 30 0 0 chr3 87862253 87862286 -139662292 + (TG)n Simple_repeat Simple_repeat 1 33 0 416 342 71 58 chr3 87862474 87863036 -139661542 + L2 LINE L2 2726 3302 -11 275 339 101 41 chr3 87864038 87864256 -139660322 - MIR SINE MIR -13 249 19 299 230 30 0 chr3 87864466 87864566 -139660012 - L1MC5 LINE L1 -51 7910 7808 4199 78 9 0 chr3 87865095 87865644 -139658934 + MER41A LTR ERV1 1 554 0 466 254 27 0 chr3 87866449 87866559 -139658019 + MIR SINE MIR 80 192 -70 517 281 38 6 chr3 87866844 87867004 -139657574 + MIR SINE MIR 85 249 -13 183 318 183 8 chr3 87867119 87867245 -139657333 - L2 LINE L2 -560 2754 2607 599 266 197 0 chr3 87867719 87867937 -139656641 - MIR SINE MIR 0 262 2 2461 25 0 0 chr3 87869761 87870041 -139654537 - AluYb8 SINE Alu -2 316 37 2239 16 0 0 chr3 87870389 87870639 -139653939 - AluYb8 SINE Alu -32 286 37 253 260 213 39 chr3 87871864 87871991 -139652587 + MIR3 SINE MIR 35 183 -25 207 352 77 0 chr3 87872730 87872821 -139651757 - MIR SINE MIR 0 262 165 599 261 43 39 chr3 87872822 87873029 -139651549 - L2 LINE L2 -5 3308 3101 1647 184 4 7 chr3 87873044 87873322 -139651256 + AluJo SINE Alu 11 287 -25 227 256 24 37 chr3 87873367 87873449 -139651129 - L2 LINE L2 -207 3106 3026 23 0 0 0 chr3 87874443 87874466 -139650112 + AT_rich Low_complexity Low_complexity 1 23 0 318 26 0 0 chr3 87874728 87874767 -139649811 + (TG)n Simple_repeat Simple_repeat 1 39 0 340 288 54 90 chr3 87874829 87875309 -139649269 + MLT1J LTR MaLR 5 467 -44 2262 74 20 3 chr3 87875429 87875726 -139648852 - AluY SINE Alu -9 302 1 1291 215 44 19 chr3 87876103 87876424 -139648154 + MLT2B1 LTR ERVL 1 329 -191 1385 158 118 0 chr3 87876424 87876678 -139647900 + Ricksha DNA DNA 5 288 -1758 * 7561 139 48 8 chr3 87876676 87878039 -139646539 + Ricksha DNA DNA 1821 3238 -8 703 184 178 0 chr3 87878046 87878179 -139646399 + MLT2B1 LTR ERVL 316 488 -32 514 60 24 0 chr3 87878179 87878262 -139646316 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 703 184 178 0 chr3 87878262 87878302 -139646276 + MLT2B1 LTR ERVL 488 520 0 2739 231 52 16 chr3 87878758 87879550 -139645028 - MER99 DNA DNA -4 824 5 315 0 0 0 chr3 87879764 87879799 -139644779 + (TG)n Simple_repeat Simple_repeat 1 35 0 359 68 17 0 chr3 87879801 87879860 -139644718 + (GA)n Simple_repeat Simple_repeat 2 61 0 252 182 0 0 chr3 87880298 87880342 -139644236 + L3 LINE CR1 647 690 -887 199 299 182 0 chr3 87880468 87880545 -139644033 + MIR SINE MIR 172 262 0 442 330 91 5 chr3 87880772 87880974 -139643604 - MIR SINE MIR -34 228 19 590 311 38 9 chr3 87883832 87884044 -139640534 + MIR SINE MIR 10 227 -35 274 211 44 11 chr3 87884417 87884507 -139640071 - MLT1G LTR MaLR 0 590 498 253 299 37 37 chr3 87884578 87884685 -139639893 - MLT1A1 LTR MaLR -248 342 236 2334 103 0 0 chr3 87884908 87885208 -139639370 - AluSx SINE Alu -10 302 3 517 298 43 43 chr3 87885776 87885984 -139638594 + MIR SINE MIR 15 222 -40 643 287 14 14 chr3 87886019 87886228 -139638350 + MLT1K LTR MaLR 373 581 -7 388 345 40 28 chr3 87886239 87886416 -139638162 - MER5A DNA MER1_type -10 179 1 908 151 15 34 chr3 87886574 87886779 -139637799 - L1MA6 LINE L1 -1 6299 6099 249 289 96 0 chr3 87887958 87888041 -139636537 - MIR SINE MIR -63 145 55 244 240 107 0 chr3 87888174 87888249 -139636329 + Charlie8 DNA MER1_type 110 192 -2225 948 240 115 40 chr3 87888434 87888487 -139636091 - MLT1I LTR MaLR 0 409 361 1871 122 47 70 chr3 87888487 87888871 -139635707 + THE1C LTR MaLR 1 375 0 948 240 115 40 chr3 87888871 87889192 -139635386 - MLT1I LTR MaLR -48 361 7 258 333 93 0 chr3 87889370 87889478 -139635100 + MIR SINE MIR 46 163 -99 1227 219 31 16 chr3 87889503 87889821 -139634757 - MLT1A1 LTR MaLR -26 441 10 378 344 15 0 chr3 87889969 87890100 -139634478 + MIR SINE MIR 78 210 -52 22 0 0 0 chr3 87890193 87890215 -139634363 + AT_rich Low_complexity Low_complexity 1 22 0 287 116 0 0 chr3 87890248 87890291 -139634287 - MLT1A1 LTR MaLR -202 163 121 359 333 71 7 chr3 87990919 87991060 -139533518 - MIR3 SINE MIR -27 181 32 182 37 37 0 chr3 87991157 87991184 -139533394 + (CACCC)n Simple_repeat Simple_repeat 4 31 0 509 273 78 48 chr3 87992880 87993121 -139531457 - MIR SINE MIR 0 262 5 216 347 8 32 chr3 87993422 87993546 -139531032 - L2 LINE L2 -551 2763 2643 423 271 116 8 chr3 87994576 87994705 -139529873 + MIR3 SINE MIR 38 180 -28 377 309 161 0 chr3 87995060 87995228 -139529350 - MIR SINE MIR -48 214 20 1330 185 142 19 chr3 87995280 87995604 -139528974 - MLT1A1 LTR MaLR 0 365 2 206 233 0 17 chr3 87996086 87996146 -139528432 + CT-rich Low_complexity Low_complexity 1 59 0 389 330 110 20 chr3 87997420 87997620 -139526958 - MIR SINE MIR 0 262 45 195 188 83 0 chr3 87999864 87999912 -139524666 + L3b LINE CR1 1302 1353 -230 454 308 23 8 chr3 87999936 88000069 -139524509 - MIR3 SINE MIR -49 159 25 516 265 138 11 chr3 88000748 88000929 -139523649 + MIR SINE MIR 41 244 -18 762 333 133 25 chr3 88002498 88002670 -139521908 - L3 LINE CR1 -1 1576 1424 1856 119 11 0 chr3 88002670 88002979 -139521599 - AluSp SINE Alu 0 313 1 762 333 133 25 chr3 88002979 88003415 -139521163 - L3 LINE CR1 -153 1424 902 940 328 43 41 chr3 88003923 88004389 -139520189 - L3 LINE CR1 -767 810 344 1352 181 64 0 chr3 88004672 88004937 -139519641 + AluJo SINE Alu 1 282 -30 564 202 274 34 chr3 88005354 88005562 -139519016 + MIR SINE MIR 5 262 0 212 203 14 29 chr3 88006530 88006599 -139517979 + G-rich Low_complexity Low_complexity 4 71 0 204 211 0 0 chr3 88008652 88008690 -139515888 + G-rich Low_complexity Low_complexity 2 39 0 198 0 0 0 chr3 88008796 88008818 -139515760 + (A)n Simple_repeat Simple_repeat 1 22 0 343 309 48 8 chr3 88010103 88010229 -139514349 - MIR SINE MIR -31 231 101 829 143 0 8 chr3 88010231 88010357 -139514221 + FLAM_C SINE Alu 3 127 -16 200 290 72 0 chr3 88010362 88010431 -139514147 - MIR SINE MIR -83 125 52 317 367 47 12 chr3 88012665 88012834 -139511744 + MIR3 SINE MIR 20 194 -14 2231 85 3 0 chr3 88012836 88013130 -139511448 - AluY SINE Alu -16 295 1 301 164 19 59 chr3 88013697 88013804 -139510774 + MLT1H LTR MaLR 463 549 0 298 250 220 0 chr3 88014179 88014279 -139510299 - L2 LINE L2 -3 3310 3189 2389 156 112 58 chr3 88014336 88014874 -139509704 + MLT1F1 LTR MaLR 1 567 0 505 241 18 121 chr3 88016394 88016618 -139507960 + MIR SINE MIR 62 262 0 185 297 47 0 chr3 88018202 88018266 -139506312 - L2 LINE L2 0 3272 3206 266 214 101 11 chr3 88018428 88018517 -139506061 - L1MC4a LINE L1 -1633 6175 6079 2053 180 44 23 chr3 88018808 88019242 -139505336 + L1ME1 LINE L1 5443 5885 -281 931 140 0 13 chr3 88019244 88019401 -139505177 + AluJb SINE Alu 158 312 0 935 245 43 18 chr3 88019409 88019691 -139504887 + L1ME1 LINE L1 5875 6163 -3 183 325 71 16 chr3 88021012 88021138 -139503440 + MIR SINE MIR 86 218 -44 324 0 0 0 chr3 88021855 88021891 -139502687 + (TG)n Simple_repeat Simple_repeat 2 37 0 218 217 15 33 chr3 88022432 88022497 -139502081 - MIR SINE MIR -67 141 87 345 304 9 9 chr3 88023209 88023324 -139501254 + GA-rich Low_complexity Low_complexity 2 116 0 288 296 108 0 chr3 88023513 88023666 -139500912 + MIR SINE MIR 17 191 -64 872 193 335 9 chr3 88025249 88025685 -139498893 + SATR1 Satellite Satellite 1 578 -2 1171 208 241 32 chr3 88025718 88026431 -139498147 + SATR1 Satellite Satellite 1 862 -4 959 226 193 25 chr3 88026478 88026886 -139497692 + SATR1 Satellite Satellite 1 476 -404 2087 113 0 10 chr3 88028561 88028863 -139495715 + AluSc SINE Alu 3 301 -8 2146 109 3 7 chr3 88029418 88029721 -139494857 - AluSg SINE Alu -3 307 6 342 313 79 47 chr3 88030120 88030334 -139494244 + MIR SINE MIR 32 252 -10 2964 238 26 35 chr3 88031162 88031410 -139493168 - L1MB3 LINE L1 -31 6152 5903 2105 144 0 0 chr3 88031410 88031715 -139492863 - AluSx SINE Alu -7 305 1 2964 238 26 35 chr3 88031715 88031817 -139492761 - L1MB3 LINE L1 -280 5903 5802 1883 153 0 25 chr3 88031817 88032131 -139492447 - AluSx SINE Alu 0 312 7 2964 238 26 35 chr3 88032131 88033127 -139491451 - L1MB3 LINE L1 -381 5802 4818 2029 139 3 3 chr3 88033162 88033471 -139491107 + AluSp SINE Alu 1 309 -4 1163 223 5 74 chr3 88033551 88033758 -139490820 - L1MA4 LINE L1 -170 6130 5961 1685 185 0 4 chr3 88033758 88034039 -139490539 - AluSx SINE Alu -32 280 1 1163 223 5 74 chr3 88034039 88034222 -139490356 - L1MA4 LINE L1 -339 5961 5767 322 231 112 42 chr3 88034259 88034402 -139490176 + HsTC2 DNA Tc2 1628 1780 -118 2120 136 0 31 chr3 88034407 88034730 -139489848 + AluSp SINE Alu 1 313 0 367 269 40 40 chr3 88034867 88035016 -139489562 + MER5B DNA MER1_type 24 172 -6 803 222 40 0 chr3 88035121 88035319 -139489259 - MER6B DNA MER2_type 0 210 5 1356 142 28 9 chr3 88037220 88037438 -139487140 + AluSq SINE Alu 3 224 -89 1072 203 241 11 chr3 88037440 88038357 -139486221 + SATR1 Satellite Satellite 1 1128 -2 1869 188 100 54 chr3 88038433 88039478 -139485100 + SATR1 Satellite Satellite 1 1092 -1 2141 192 115 11 chr3 88039509 88040978 -139483600 + SATR1 Satellite Satellite 1 1620 -20 27815 95 12 11 chr3 88040978 88045032 -139479546 - HERVE LTR ERV1 -2648 5165 1108 305 194 11 84 chr3 88045097 88045288 -139479290 + (TAA)n Simple_repeat Simple_repeat 2 178 0 21 36 0 0 chr3 88045307 88045335 -139479243 + AT_rich Low_complexity Low_complexity 1 28 0 1392 247 227 16 chr3 88045381 88047372 -139477206 + SATR1 Satellite Satellite 1 2410 -94 790 203 279 35 chr3 88047395 88047899 -139476679 + SATR1 Satellite Satellite 1 626 -2 989 220 206 45 chr3 88047936 88048951 -139475627 + SATR1 Satellite Satellite 1 1179 -44 821 231 192 29 chr3 88049029 88049439 -139475139 + SATR1 Satellite Satellite 1 476 -404 2118 128 0 3 chr3 88051152 88051456 -139473122 + AluY SINE Alu 1 303 -8 274 235 73 73 chr3 88051513 88051649 -139472929 - L2 LINE L2 0 3272 3137 2050 124 0 16 chr3 88052010 88052325 -139472253 - AluSg SINE Alu 0 310 1 287 345 64 32 chr3 88052719 88052939 -139471639 + MIR SINE MIR 32 258 -4 3579 215 17 64 chr3 88053259 88054276 -139470302 - LTR5 LTR ERVK 0 969 1 25 31 0 0 chr3 88054733 88054765 -139469813 + AT_rich Low_complexity Low_complexity 1 32 0 1238 224 14 28 chr3 88054785 88055032 -139469546 - L1MB3 LINE L1 -30 6153 5912 2123 129 3 0 chr3 88055032 88055327 -139469251 - AluSx SINE Alu -14 298 3 1238 224 14 28 chr3 88055327 88055429 -139469149 - L1MB3 LINE L1 -271 5912 5810 1982 137 6 37 chr3 88055429 88055750 -139468828 - AluSx SINE Alu -1 311 1 226 91 45 0 chr3 88055809 88055853 -139468725 + LTR66 LTR ERVL 394 439 -171 189 171 0 0 chr3 88055855 88055890 -139468688 + (CATATA)n Simple_repeat Simple_repeat 2 36 0 * 195 69 0 0 chr3 88055889 88055918 -139468660 + (GA)n Simple_repeat Simple_repeat 2 30 0 1629 196 0 18 chr3 88055920 88056205 -139468373 - AluJo SINE Alu -30 282 3 509 220 8 17 chr3 88056393 88056511 -139468067 - MER58B DNA MER1_type -14 327 211 427 356 97 33 chr3 88056534 88056614 -139467964 + L2 LINE L2 2692 2765 -507 435 54 32 172 chr3 88056614 88056667 -139467911 - MADE1 DNA Mariner 0 80 44 2039 126 13 20 chr3 88056667 88056969 -139467609 + AluSx SINE Alu 1 300 -12 435 54 32 172 chr3 88056969 88057008 -139467570 - MADE1 DNA Mariner -36 44 1 427 356 97 33 chr3 88057008 88057476 -139467102 + L2 LINE L2 2765 3271 -1 201 271 57 43 chr3 88057787 88057857 -139466721 - MIR3 SINE MIR -1 207 137 573 257 0 0 chr3 88058967 88059420 -139465158 + (CA)n Simple_repeat Simple_repeat 1 453 0 659 196 0 22 chr3 88059442 88059626 -139464952 + (CA)n Simple_repeat Simple_repeat 1 180 0 540 266 0 0 chr3 88059662 88059831 -139464747 + (CA)n Simple_repeat Simple_repeat 1 169 0 351 349 20 14 chr3 88060874 88061020 -139463558 - L2 LINE L2 0 3313 3167 301 324 65 7 chr3 88061165 88061304 -139463274 + MIR SINE MIR 43 189 -73 789 240 29 57 chr3 88061326 88061605 -139462973 + MLT1A2 LTR MaLR 87 357 -17 2422 104 52 3 chr3 88062013 88062360 -139462218 + THE1B LTR MaLR 1 364 0 2117 123 0 0 chr3 88063609 88063921 -139460657 - AluSq SINE Alu 0 312 1 736 212 0 0 chr3 88064260 88064392 -139460186 + FLAM_C SINE Alu 2 133 -10 1924 157 20 3 chr3 88064800 88065106 -139459472 + AluSq SINE Alu 1 311 -2 674 219 4 4 chr3 88065114 88065371 -139459207 + GA-rich Low_complexity Low_complexity 1 257 0 336 48 0 0 chr3 88065444 88065486 -139459092 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 1103 214 33 78 chr3 88066220 88066278 -139458300 + L1MB8 LINE L1 5769 5828 -350 2041 132 3 7 chr3 88066278 88066574 -139458004 + AluSx SINE Alu 1 295 -17 1103 214 33 78 chr3 88066574 88066940 -139457638 + L1MB8 LINE L1 5828 6174 -4 876 95 4 6 chr3 88066945 88067209 -139457369 + AluSx SINE Alu 1 310 0 209 261 0 0 chr3 88068594 88068640 -139455938 - MIR SINE MIR -14 248 203 221 308 132 44 chr3 88068778 88068937 -139455641 + L2 LINE L2 3054 3226 -87 2173 103 10 7 chr3 88068937 88069239 -139455339 - AluSg SINE Alu -6 304 2 908 176 16 64 chr3 88069249 88069436 -139455142 - AluJo SINE Alu -23 289 112 877 122 0 43 chr3 88069444 88069583 -139454995 + FLAM_C SINE Alu 1 133 0 2526 84 0 0 chr3 88069965 88070275 -139454303 - AluY SINE Alu -1 310 1 3881 191 22 46 chr3 88071115 88071919 -139452659 + LTR1 LTR ERV1 1 785 0 1274 198 122 31 chr3 88072250 88072293 -139452285 + MLT1C LTR MaLR 1 39 -466 6654 122 19 9 chr3 88072293 88073253 -139451325 + LTR5 LTR ERVK 1 969 0 1274 198 122 31 chr3 88073253 88073635 -139450943 + MLT1C LTR MaLR 39 505 0 537 103 0 111 chr3 88074089 88074206 -139450372 + LTR7 LTR ERV1 1 104 -346 25 51 0 0 chr3 88076219 88076258 -139448320 + AT_rich Low_complexity Low_complexity 1 39 0 802 120 0 0 chr3 88076558 88076666 -139447912 - AluSq/x SINE Alu -205 108 1 1417 110 34 4 chr3 88076694 88076930 -139447648 - SVA Other Other -689 697 455 322 205 104 141 chr3 88076936 88077263 -139447315 + LTR7 LTR ERV1 90 404 -46 2061 100 7 7 chr3 88077285 88077595 -139446983 + LTR7 LTR ERV1 139 448 -2 344 242 164 8 chr3 88078284 88078412 -139446166 + MLT1J2 LTR MaLR 252 399 -51 1970 150 0 3 chr3 88078742 88079072 -139445506 + AluSx SINE Alu 1 312 0 2796 149 12 23 chr3 88079082 88079597 -139444981 + L1MC1 LINE L1 5783 6291 -42 431 185 11 0 chr3 88079597 88079689 -139444889 + CT-rich Low_complexity Low_complexity 4 96 0 265 180 0 0 chr3 88079704 88079715 -139444863 + L1MC1 LINE L1 6268 6278 -55 2038 121 0 4 chr3 88079715 88079987 -139444591 - AluSg SINE Alu -39 271 1 265 180 0 0 chr3 88079987 88080044 -139444534 + L1MC1 LINE L1 6277 6332 -1 234 279 70 12 chr3 88080128 88080214 -139444364 + L1ME3A LINE L1 6036 6126 -44 292 221 97 104 chr3 88080468 88080610 -139443968 - L2 LINE L2 -1350 1964 1822 2003 144 20 0 chr3 88080610 88080915 -139443663 + AluSp SINE Alu 1 311 -2 292 221 97 104 chr3 88080915 88080926 -139443652 - L2 LINE L2 -1492 1822 1812 1992 164 110 60 chr3 88080973 88081166 -139443412 + MLT1D LTR MaLR 1 183 -322 2310 112 0 0 chr3 88081166 88081460 -139443118 + AluSq SINE Alu 1 294 -19 1992 164 110 60 chr3 88081460 88081747 -139442831 + MLT1D LTR MaLR 183 505 0 1841 131 64 0 chr3 88081802 88082085 -139442493 + AluY SINE Alu 2 302 -9 1751 136 100 0 chr3 88082219 88082498 -139442080 - AluSx SINE Alu -5 307 1 354 320 187 11 chr3 88082547 88082900 -139441678 - L2 LINE L2 -2247 1067 653 2044 109 53 0 chr3 88083360 88083643 -139440935 - AluSx SINE Alu -14 298 1 2010 154 76 72 chr3 88084033 88084638 -139439940 + MER4A LTR ERV1 2 465 0 4086 192 51 12 chr3 88084704 88085528 -139439050 + MER21B LTR ERV1 1 856 -7 11953 224 54 46 chr3 88085547 88085627 -139438951 + MER21B-int LTR ERV1 1 79 -4112 2356 91 3 0 chr3 88085627 88085923 -139438655 + AluY SINE Alu 1 297 -14 11953 224 54 46 chr3 88085923 88087850 -139436728 + MER21B-int LTR ERV1 79 1989 -2202 2468 99 0 3 chr3 88087850 88088162 -139436416 + AluSq SINE Alu 1 311 -2 11953 224 54 46 chr3 88088162 88088950 -139435628 + MER21B-int LTR ERV1 1989 2769 -1422 2077 118 44 0 chr3 88088950 88089246 -139435332 + AluSp SINE Alu 3 311 -2 11953 224 54 46 chr3 88089246 88089468 -139435110 + MER21B-int LTR ERV1 2769 2988 -1203 2050 86 83 7 chr3 88089468 88089758 -139434820 + AluSx SINE Alu 1 312 0 11953 224 54 46 chr3 88089758 88089973 -139434605 + MER21B-int LTR ERV1 2988 3268 -923 2115 148 19 125 chr3 88089973 88090169 -139434409 + MSTA LTR MaLR 1 118 -310 2183 124 3 0 chr3 88090169 88090467 -139434111 + AluSx SINE Alu 1 299 -13 2115 148 19 125 chr3 88090467 88090749 -139433829 + MSTA LTR MaLR 118 428 0 11953 224 54 46 chr3 88090749 88090886 -139433692 + MER21B-int LTR ERV1 3268 3402 -789 2344 110 0 0 chr3 88090886 88091186 -139433392 - AluSg SINE Alu -10 300 1 1567 69 45 0 chr3 88091508 88091710 -139432868 + AluY SINE Alu 94 304 -7 2314 99 0 13 chr3 88092918 88093222 -139431356 - AluSx SINE Alu -12 300 1 636 302 61 0 chr3 88093434 88093646 -139430932 - MER82 DNA MER2_type 0 653 429 2087 124 37 13 chr3 88093646 88093945 -139430633 - AluSx SINE Alu -6 306 1 197 309 118 50 chr3 88094606 88094826 -139429752 - L2 LINE L2 -527 2787 2553 3859 204 63 40 chr3 88094844 88094960 -139429618 + MER45B DNA AcHobo 11 123 -1458 2113 117 0 0 chr3 88094960 88095283 -139429295 - AluSx SINE Alu 0 323 1 3859 204 63 40 chr3 88095283 88095799 -139428779 + MER45B DNA AcHobo 123 679 -902 2062 146 0 0 chr3 88095799 88096116 -139428462 + AluSg SINE Alu 1 317 0 3859 204 63 40 chr3 88096116 88096487 -139428091 + MER45B DNA AcHobo 679 1040 0 668 168 23 53 chr3 88096820 88096951 -139427627 + FLAM_A SINE Alu 1 127 -6 351 203 25 127 chr3 88097094 88097252 -139427326 + MIR SINE MIR 74 215 -47 579 227 31 133 chr3 88097259 88097515 -139427063 - MLT1C LTR MaLR 0 467 161 218 213 0 13 chr3 88097515 88097590 -139426988 + (TA)n Simple_repeat Simple_repeat 1 74 0 1490 140 5 9 chr3 88097592 88097837 -139426741 - AluSx SINE Alu 0 306 63 25 31 0 0 chr3 88198039 88198071 -139326507 + AT_rich Low_complexity Low_complexity 1 32 0 2459 97 0 0 chr3 88198236 88198545 -139326033 - AluSc SINE Alu 0 309 1 315 0 0 0 chr3 88198796 88198831 -139325747 + (CA)n Simple_repeat Simple_repeat 2 36 0 198 0 0 0 chr3 88199799 88199821 -139324757 + (TG)n Simple_repeat Simple_repeat 1 22 0 283 236 174 94 chr3 88203301 88203513 -139321065 - MIR SINE MIR -6 256 28 233 122 54 0 chr3 88204554 88204628 -139319950 + (TA)n Simple_repeat Simple_repeat 1 78 0 243 0 0 0 chr3 88206199 88206226 -139318352 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 357 234 96 67 chr3 88207746 88207876 -139316702 - MER113 DNA MER1_type? -304 217 77 1850 138 6 46 chr3 88207876 88208201 -139316377 + AluJo SINE Alu 1 312 0 357 234 96 67 chr3 88208201 88208279 -139316299 - MER113 DNA MER1_type? -444 77 3 280 198 161 37 chr3 88208430 88208511 -139316067 + L2 LINE L2 3201 3291 -22 207 156 0 0 chr3 88208672 88208704 -139315874 + GA-rich Low_complexity Low_complexity 3 34 0 394 275 47 20 chr3 88208815 88208964 -139315614 - MER102b DNA MER1_type -51 290 138 406 287 0 0 chr3 88209989 88210097 -139314481 + MIR SINE MIR 53 160 -102 644 196 54 31 chr3 88210157 88210230 -139314348 + MER58 DNA MER1_type 6 76 -2344 2284 111 0 0 chr3 88210230 88210537 -139314041 - AluSc SINE Alu -2 307 1 644 196 54 31 chr3 88210537 88210663 -139313915 + MER58 DNA MER1_type 76 2420 0 253 105 0 0 chr3 88211444 88211482 -139313096 - MADE1 DNA Mariner -41 39 2 2095 128 4 0 chr3 88211634 88211941 -139312637 + AluSx SINE Alu 3 310 0 283 274 21 11 chr3 88212358 88212453 -139312125 + L2 LINE L2 3173 3268 -4 2045 184 54 41 chr3 88214150 88214604 -139309974 + Charlie1b DNA MER1_type 1 464 -2297 2293 90 3 7 chr3 88214604 88214904 -139309674 - AluSc SINE Alu -10 299 1 2045 184 54 41 chr3 88214904 88214965 -139309613 + Charlie1b DNA MER1_type 464 523 0 405 299 118 42 chr3 88215381 88216091 -139308487 - L2 LINE L2 -85 3228 2471 23 0 0 0 chr3 88217212 88217235 -139307343 + AT_rich Low_complexity Low_complexity 1 23 0 237 108 0 0 chr3 88217704 88217741 -139306837 + (TG)n Simple_repeat Simple_repeat 1 37 0 365 315 21 7 chr3 88221399 88221542 -139303036 - MIR SINE MIR -13 249 105 1437 177 0 79 chr3 88222459 88222776 -139301802 + AluJo SINE Alu 1 292 -20 213 283 149 20 chr3 88223494 88223727 -139300851 + L2 LINE L2 2787 3056 -257 222 219 78 0 chr3 88223824 88223888 -139300690 + L2 LINE L2 3195 3263 -50 801 169 62 22 chr3 88224798 88224976 -139299602 + MER5A DNA MER1_type 1 185 -4 206 169 42 14 chr3 88225441 88225512 -139299066 + (TA)n Simple_repeat Simple_repeat 1 73 0 381 235 0 0 chr3 88226187 88226272 -139298306 - MER5A DNA MER1_type 0 189 105 2323 83 3 17 chr3 88226353 88226653 -139297925 + AluY SINE Alu 1 296 -15 800 253 67 56 chr3 88226737 88227103 -139297475 - L1ME LINE L1 -615 5547 5165 2112 110 0 38 chr3 88227103 88227422 -139297156 - AluY SINE Alu -4 307 1 800 253 67 56 chr3 88227422 88227708 -139296870 - L1ME LINE L1 -997 5165 4884 21 0 0 0 chr3 88227975 88227996 -139296582 + AT_rich Low_complexity Low_complexity 1 21 0 521 267 6 24 chr3 88229256 88229421 -139295157 - MIR SINE MIR -68 194 33 238 150 0 0 chr3 88229534 88229574 -139295004 - L2 LINE L2 -90 3223 3184 2195 84 7 7 chr3 88229726 88230013 -139294565 + AluSc SINE Alu 1 287 -22 214 326 93 0 chr3 88230306 88230392 -139294186 + MIR SINE MIR 43 136 -72 611 180 85 178 chr3 88230512 88230889 -139293689 - MER2 DNA MER2_type -1 343 2 216 279 0 33 chr3 88233167 88233228 -139291350 - MIR3 SINE MIR -39 169 111 1840 107 110 14 chr3 88234515 88234796 -139289782 + AluSg SINE Alu 3 310 0 259 289 58 19 chr3 88235372 88235476 -139289102 + MIR3 SINE MIR 10 117 -91 210 162 0 0 chr3 88235580 88235617 -139288961 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 379 214 12 12 chr3 88235682 88235766 -139288812 - L1MA9 LINE L1 -147 6165 6082 480 170 45 27 chr3 88235780 88235853 -139288725 + L1MA9 LINE L1 6161 6238 -74 1682 181 123 0 chr3 88235853 88236179 -139288399 - MER47A DNA MER2_type 0 366 1 480 170 45 27 chr3 88236179 88236217 -139288361 + L1MA9 LINE L1 6238 6274 -38 23 0 0 0 chr3 88236219 88236242 -139288336 + AT_rich Low_complexity Low_complexity 1 23 0 233 303 53 53 chr3 88236528 88236660 -139287918 + L2 LINE L2 3182 3313 0 305 321 132 47 chr3 88238208 88238420 -139286158 + MIR SINE MIR 14 243 -19 250 180 40 0 chr3 88238595 88238645 -139285933 - MIR SINE MIR -10 252 201 582 249 29 50 chr3 88238736 88238948 -139285630 - MIR SINE MIR -39 223 13 690 297 29 13 chr3 88239018 88239257 -139285321 - MIR SINE MIR -3 259 17 461 241 76 21 chr3 88239832 88239977 -139284601 + MIR SINE MIR 109 261 -1 371 266 0 13 chr3 88240258 88240337 -139284241 - MER91A DNA MER1_type 0 196 119 200 306 143 0 chr3 88241137 88241235 -139283343 + L3b LINE CR1 1277 1388 -195 189 133 0 0 chr3 88242353 88242383 -139282195 + L2 LINE L2 3243 3272 0 308 260 98 24 chr3 88243500 88243623 -139280955 - MIR SINE MIR -54 208 77 953 295 56 34 chr3 88244323 88244791 -139279787 - MLT1L LTR MaLR -8 607 130 993 251 79 9 chr3 88246874 88247189 -139277389 + MER113 DNA MER1_type? 9 345 -176 417 281 106 0 chr3 88248294 88248454 -139276124 + MIR SINE MIR 74 250 -12 2553 56 0 10 chr3 88248588 88248892 -139275686 + AluY SINE Alu 1 301 -10 300 277 48 0 chr3 88252316 88252399 -139272179 + MER103 DNA DNA 4 90 -76 1040 230 60 52 chr3 88252819 88253188 -139271390 + MER113 DNA MER1_type? 1 372 -149 247 247 175 90 chr3 88253267 88253433 -139271145 + MER5A DNA MER1_type 10 189 0 1225 124 0 6 chr3 88254636 88254813 -139269765 + AluSg/x SINE Alu 135 310 0 579 288 44 14 chr3 88255524 88255601 -139268977 + L2 LINE L2 3019 3092 -221 1954 140 27 0 chr3 88255601 88255894 -139268684 - AluSx SINE Alu -11 301 1 579 288 44 14 chr3 88255894 88256044 -139268534 + L2 LINE L2 3092 3313 0 212 281 88 0 chr3 88256798 88256855 -139267723 - L2 LINE L2 -2 3311 3250 284 264 14 0 chr3 88258386 88258458 -139266120 - MER5C DNA MER1_type -200 124 52 240 35 0 0 chr3 88258465 88258494 -139266084 + (TAG)n Simple_repeat Simple_repeat 2 30 0 377 312 46 34 chr3 88259404 88259672 -139264906 + L2 LINE L2 2645 2964 -349 180 0 0 0 chr3 88261179 88261199 -139263379 + (CA)n Simple_repeat Simple_repeat 1 20 0 1529 269 32 45 chr3 88262749 88263281 -139261297 - ERVL LTR ERVL -439 5325 4801 2491 103 39 28 chr3 88264590 88264950 -139259628 - THE1B LTR MaLR 0 364 1 878 213 42 51 chr3 88265070 88265286 -139259292 - MER58A DNA MER1_type -10 214 1 1666 109 127 11 chr3 88265341 88265608 -139258970 + AluSg1 SINE Alu 1 298 -11 291 241 60 90 chr3 88266558 88266724 -139257854 - MIR SINE MIR -12 250 90 330 51 0 0 chr3 88268871 88268910 -139255668 + MADE1 DNA Mariner 1 39 -41 3144 148 79 14 chr3 88269174 88269298 -139255280 - MER1A DNA MER1_type -2173 527 412 267 60 60 0 chr3 88269298 88269348 -139255230 + (TTA)n Simple_repeat Simple_repeat 1 53 0 3144 148 79 14 chr3 88269348 88269716 -139254862 - MER1A DNA MER1_type -2288 412 3 2678 119 8 3 chr3 88269803 88270165 -139254413 + THE1B LTR MaLR 1 364 0 422 252 98 28 chr3 88270511 88270654 -139253924 + MIR SINE MIR 17 169 -93 * 426 184 126 0 chr3 88270650 88270737 -139253841 - MIR SINE MIR -4 258 161 231 333 9 18 chr3 88270750 88270861 -139253717 + MIR SINE MIR 146 255 -7 1809 182 79 94 chr3 88270878 88271352 -139253226 - MLT1F LTR MaLR -5 537 71 2577 108 88 23 chr3 88271352 88271750 -139252828 + MSTA LTR MaLR 1 424 -4 1809 182 79 94 chr3 88271750 88271820 -139252758 - MLT1F LTR MaLR -471 71 1 463 211 0 11 chr3 88273792 88273882 -139250696 + MIR SINE MIR 1 89 -173 1336 196 28 8 chr3 88273885 88274140 -139250438 - MLT1F1 LTR MaLR 0 567 308 344 295 86 7 chr3 88274173 88274312 -139250266 + MIR SINE MIR 93 242 -20 2015 180 36 59 chr3 88276435 88276913 -139247665 - MLT1C LTR MaLR 0 467 1 397 272 230 19 chr3 88277297 88277510 -139247068 + MIR SINE MIR 2 259 -3 22 0 0 0 chr3 88277707 88277729 -139246849 + AT_rich Low_complexity Low_complexity 1 22 0 1335 149 13 53 chr3 88277788 88278016 -139246562 + MER20 DNA MER1_type 1 219 0 2254 106 3 0 chr3 88278513 88278806 -139245772 + AluSg SINE Alu 1 294 -16 717 261 59 8 chr3 88278891 88279129 -139245449 - MIR SINE MIR 0 262 13 1192 183 76 15 chr3 88279482 88279744 -139244834 - MLT1D LTR MaLR -48 457 180 808 269 91 25 chr3 88279743 88279767 -139244811 + MER113 DNA MER1_type? 101 122 -399 * 1827 160 10 3 chr3 88279767 88280060 -139244518 - L1MB2 LINE L1 -8 6163 5869 808 269 91 25 chr3 88280060 88280355 -139244223 + MER113 DNA MER1_type? 122 441 -80 287 336 45 30 chr3 88282627 88282761 -139241817 - L2 LINE L2 -9 3263 3128 1718 138 35 0 chr3 88282866 88283148 -139241430 + L1MA8 LINE L1 5997 6288 -3 519 275 50 99 chr3 88283196 88283578 -139241000 + L1M4 LINE L1 4059 4421 -1725 1923 138 0 3 chr3 88283599 88283913 -139240665 + AluSg SINE Alu 1 288 -22 843 73 65 16 chr3 88283924 88284047 -139240531 - L1PA12 LINE L1 0 6168 6040 537 270 67 49 chr3 88284414 88284681 -139239897 + MER113 DNA MER1_type? 186 457 -64 42056 65 4 3 chr3 88284888 88291025 -139233553 - L1PA5 LINE L1 -3 6151 11 981 139 17 101 chr3 88291341 88291578 -139233000 - MER20 DNA MER1_type -2 217 1 386 302 43 0 chr3 88292008 88292147 -139232431 - MIR SINE MIR -35 227 83 183 260 156 0 chr3 88292163 88292240 -139232338 + MIR3 SINE MIR 72 160 -48 773 246 109 52 chr3 88292266 88292547 -139232031 - MLT1C LTR MaLR -34 433 169 2112 117 0 0 chr3 88292547 88292828 -139231750 - AluSg SINE Alu -29 281 1 773 246 109 52 chr3 88292828 88292909 -139231669 - MLT1C LTR MaLR -298 169 94 2284 81 10 13 chr3 88292909 88293219 -139231359 - AluSc SINE Alu 0 309 1 773 246 109 52 chr3 88293219 88293315 -139231263 - MLT1C LTR MaLR -373 94 1 237 267 27 13 chr3 88294137 88294212 -139230366 + MIR SINE MIR 79 154 -108 22 0 0 0 chr3 88294516 88294538 -139230040 + AT_rich Low_complexity Low_complexity 1 22 0 3615 266 77 41 chr3 88294588 88294643 -139229935 - HAL1 LINE L1 -105 2402 2350 2392 81 0 0 chr3 88294643 88294941 -139229637 - AluY SINE Alu -13 298 1 3615 266 77 41 chr3 88294941 88295648 -139228930 - HAL1 LINE L1 -157 2350 1670 2184 121 0 0 chr3 88295648 88295945 -139228633 - AluSc SINE Alu -12 297 1 3615 266 77 41 chr3 88295945 88296752 -139227826 - HAL1 LINE L1 -837 1670 775 208 200 50 0 chr3 88296760 88296820 -139227758 + (TG)n Simple_repeat Simple_repeat 1 63 0 189 0 0 0 chr3 88296841 88296862 -139227716 + (C)n Simple_repeat Simple_repeat 1 21 0 467 229 0 36 chr3 88296886 88297052 -139227526 + (CCCCG)n Simple_repeat Simple_repeat 2 161 0 35267 41 1 2 chr3 88297170 88301378 -139223200 - L1P LINE L1 -1946 4200 1 2562 139 81 44 chr3 88301380 88302111 -139222467 - L1MB4 LINE L1 -355 5825 5060 2296 112 0 0 chr3 88302530 88302833 -139221745 - AluSq SINE Alu -10 303 1 22 0 0 0 chr3 88303091 88303113 -139221465 + AT_rich Low_complexity Low_complexity 1 22 0 446 257 68 47 chr3 88304236 88304384 -139220194 + MIR SINE MIR 108 258 -4 339 346 102 57 chr3 88304482 88304765 -139219813 + L2 LINE L2 2870 3165 -107 1139 170 163 0 chr3 88306100 88306377 -139218201 - MER33 DNA MER1_type -2 322 1 216 333 111 42 chr3 88307220 88307332 -139217246 + MIR3 SINE MIR 30 156 -52 3650 18 0 0 chr3 88307332 88307727 -139216851 - L1PA2 LINE L1 -1 6154 5760 216 333 111 42 chr3 88307727 88307758 -139216820 + MIR3 SINE MIR 156 183 -25 281 235 62 56 chr3 88311276 88311438 -139213140 + L1PA4 LINE L1 3914 4076 -2070 10626 31 2 0 chr3 88311514 88313559 -139211019 + L1PA4 LINE L1 4127 6152 -3 1025 157 52 125 chr3 88313571 88313916 -139210662 + L1MB4 LINE L1 5848 6167 -13 235 299 159 19 chr3 88314909 88315016 -139209562 - L2 LINE L2 -14 3258 3137 672 235 22 22 chr3 88315115 88315298 -139209280 + MER5A DNA MER1_type 6 188 -1 304 286 107 45 chr3 88315404 88315582 -139208996 - L2 LINE L2 -206 3107 2919 2049 148 0 0 chr3 88316375 88316665 -139207913 + AluSx SINE Alu 1 290 -22 1492 219 68 32 chr3 88316688 88317057 -139207521 - MER58D DNA MER1_type -4 382 1 317 146 0 0 chr3 88317067 88317115 -139207463 - MLT2C1 LTR ERVL 0 397 350 217 182 15 30 chr3 88317127 88317193 -139207385 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 270 269 68 68 chr3 88317213 88317505 -139207073 - MLT2D LTR ERVL -55 465 170 2202 80 7 28 chr3 88317532 88317855 -139206723 + AluSp SINE Alu 1 317 0 2272 103 0 3 chr3 88317855 88318155 -139206423 + AluSc SINE Alu 1 299 -10 2376 186 31 11 chr3 88318363 88318820 -139205758 + MLT1C LTR MaLR 1 466 -1 1410 161 62 49 chr3 88318881 88319186 -139205392 - AluJb SINE Alu -3 309 1 211 310 110 55 chr3 88320463 88320608 -139203970 - MIR3 SINE MIR -50 158 6 390 322 135 5 chr3 88320701 88320909 -139203669 - MIR SINE MIR -13 249 15 6839 174 36 20 chr3 88321390 88323205 -139201373 - L1PA16 LINE L1 -9 6157 4294 2236 121 0 13 chr3 88323205 88323520 -139201058 + AluSx SINE Alu 1 311 -1 6839 174 36 20 chr3 88323520 88324075 -139200503 - L1PA16 LINE L1 -1872 4294 3750 329 326 54 15 chr3 88324078 88324316 -139200262 - L1MC4a LINE L1 -264 5857 5619 468 349 76 71 chr3 88324427 88324820 -139199758 + L2 LINE L2 2873 3267 -5 206 231 15 0 chr3 88324873 88324938 -139199640 + GA-rich Low_complexity Low_complexity 4 69 0 216 294 0 0 chr3 88324977 88325028 -139199550 + GA-rich Low_complexity Low_complexity 1 51 0 2392 55 0 51 chr3 88325076 88325388 -139199190 + AluY SINE Alu 1 296 -15 195 226 0 0 chr3 88325388 88325431 -139199147 + GA-rich Low_complexity Low_complexity 8 53 0 465 271 0 57 chr3 88325543 88325683 -139198895 - L2 LINE L2 -11 3302 3171 396 94 0 0 chr3 88325762 88325815 -139198763 + MADE1 DNA Mariner 28 80 0 295 264 188 7 chr3 88325843 88325987 -139198591 - L2 LINE L2 -248 3065 2896 2152 88 10 23 chr3 88326050 88326356 -139198222 + AluSx SINE Alu 3 304 -8 1819 190 55 55 chr3 88326412 88326869 -139197709 - MLT1C LTR MaLR -8 459 3 446 175 63 56 chr3 88329232 88329358 -139195220 + MER96B DNA MER1_type? 1 127 -290 2068 71 31 46 chr3 88329582 88329932 -139194646 - L1P4 LINE L1 -375 5799 5455 413 280 156 21 chr3 88330460 88330646 -139193932 + MIR SINE MIR 15 225 -37 2004 76 8 8 chr3 88330857 88331119 -139193459 - AluY SINE Alu -7 304 43 2318 113 0 3 chr3 88332329 88332639 -139191939 + AluSx SINE Alu 1 309 -3 454 121 60 0 chr3 88333273 88333356 -139191222 + L1MB3 LINE L1 6087 6174 -9 395 229 46 9 chr3 88333488 88333597 -139190981 + MIR SINE MIR 24 136 -126 3112 115 14 7 chr3 88333623 88334066 -139190512 + L1PA14 LINE L1 5710 6155 -6 2929 119 14 7 chr3 88333630 88334068 -139190510 + L1PA14 LINE L1 5717 6157 -4 1968 94 81 73 chr3 88334102 88334401 -139190177 + THE1C LTR MaLR 1 305 -70 2240 122 0 6 chr3 88334401 88334713 -139189865 - AluSg SINE Alu 0 310 1 1968 94 81 73 chr3 88334713 88334785 -139189793 + THE1C LTR MaLR 305 375 0 185 351 26 0 chr3 88334820 88334897 -139189681 + MIR SINE MIR 178 256 -6 1955 190 40 3 chr3 88335434 88335786 -139188792 - MLT1A1 LTR MaLR 0 365 1 2349 97 0 0 chr3 88336050 88336339 -139188239 + AluSx SINE Alu 1 289 -23 660 300 153 18 chr3 88336456 88337006 -139187572 - L2 LINE L2 -1553 1761 1138 354 98 0 0 chr3 88337680 88337731 -139186847 + (TG)n Simple_repeat Simple_repeat 1 51 0 356 280 131 39 chr3 88337745 88338027 -139186551 + LTR16C LTR ERVL 175 482 -9 280 273 45 18 chr3 88338148 88338258 -139186320 + MIR SINE MIR 2 114 -148 257 284 42 21 chr3 88338303 88338398 -139186180 - MER5A DNA MER1_type -5 184 77 619 213 178 10 chr3 88339173 88339375 -139185203 + MIR SINE MIR 12 247 -15 326 241 161 56 chr3 88339427 88339512 -139185066 + MER96B DNA MER1_type? 2 77 -340 2164 79 16 16 chr3 88339512 88339816 -139184762 - AluSc SINE Alu -5 304 1 326 241 161 56 chr3 88339816 88339892 -139184686 + MER96B DNA MER1_type? 77 180 -237 21 36 0 0 chr3 88340559 88340587 -139183991 + AT_rich Low_complexity Low_complexity 1 28 0 297 75 0 0 chr3 88340847 88340887 -139183691 + (CA)n Simple_repeat Simple_repeat 1 40 0 440 323 41 64 chr3 88341650 88341870 -139182708 + MIR SINE MIR 1 215 -47 359 289 169 6 chr3 88343294 88343460 -139181118 + L2 LINE L2 2151 2343 -971 303 230 82 67 chr3 88343462 88343597 -139180981 + L1ME3A LINE L1 6027 6163 -7 1435 99 5 0 chr3 88343720 88343921 -139180657 - L1PB1 LINE L1 -5 6146 5945 590 300 104 56 chr3 88343925 88344100 -139180478 + L2 LINE L2 2458 2623 -690 1081 166 217 103 chr3 88344100 88344267 -139180311 + MLT1B LTR MaLR 1 148 -242 2135 122 3 28 chr3 88344267 88344404 -139180174 + AluSx SINE Alu 1 140 -172 2200 114 13 3 chr3 88344404 88344711 -139179867 + AluSg SINE Alu 1 310 0 2135 122 3 28 chr3 88344711 88344893 -139179685 + AluSx SINE Alu 140 312 0 1081 166 217 103 chr3 88344893 88345075 -139179503 + MLT1B LTR MaLR 148 390 0 590 300 104 56 chr3 88345075 88345710 -139178868 + L2 LINE L2 2623 3304 -9 738 298 106 74 chr3 88345858 88346136 -139178442 + HAL1 LINE L1 22 290 -2217 2192 110 0 7 chr3 88346136 88346436 -139178142 - AluSx SINE Alu -14 298 1 738 298 106 74 chr3 88346436 88346871 -139177707 + HAL1 LINE L1 290 758 -1749 567 218 10 0 chr3 88346966 88347067 -139177511 + MER7A DNA MER2_type 1 100 -246 2262 105 10 13 chr3 88347266 88347571 -139177007 - AluSq SINE Alu -9 304 1 414 0 0 0 chr3 88449444 88449490 -139075088 + (CA)n Simple_repeat Simple_repeat 1 46 0 561 358 17 13 chr3 88449502 88449804 -139074774 - MLT1I LTR MaLR -3 406 104 526 114 0 0 chr3 88451158 88451237 -139073341 - MADE1 DNA Mariner 0 80 2 186 103 0 0 chr3 88451405 88451434 -139073144 + (CCA)n Simple_repeat Simple_repeat 2 30 0 1256 196 33 128 chr3 88451817 88452272 -139072306 - MLT2B1 LTR ERVL 0 414 3 276 244 49 0 chr3 88452287 88452369 -139072209 + L2 LINE L2 2967 3052 -220 320 186 0 14 chr3 88452648 88452718 -139071860 + LTR5 LTR ERVK 901 969 0 32147 162 10 18 chr3 88452718 88458563 -139066015 + HERVK LTR ERVK 1 5181 -735 9941 173 3 8 chr3 88458542 88460308 -139064270 + HERVK LTR ERVK 5533 7243 0 * 3401 215 21 82 chr3 88460308 88461339 -139063239 + LTR5 LTR ERVK 1 969 0 2089 133 7 17 chr3 88461556 88461858 -139062720 - AluSx SINE Alu -13 299 1 273 329 30 43 chr3 88462405 88462569 -139062009 + MER5A DNA MER1_type 25 186 -3 1710 130 16 8 chr3 88462865 88463111 -139061467 - AluSc SINE Alu -18 291 44 580 236 127 73 chr3 88463111 88463386 -139061192 + L1MC5 LINE L1 7642 7931 -30 1921 161 20 10 chr3 88463392 88463696 -139060882 + AluJb SINE Alu 1 307 -5 277 252 164 3 chr3 88464140 88464254 -139060324 - MIR SINE MIR -47 161 31 1379 155 0 0 chr3 88464606 88464813 -139059765 - AluSx SINE Alu 0 312 106 2389 207 13 58 chr3 88464913 88465232 -139059346 - L1 LINE L1 -1098 5048 4773 1985 111 3 60 chr3 88465232 88465570 -139059008 - AluY SINE Alu 0 311 1 2389 207 13 58 chr3 88465570 88465927 -139058651 - L1 LINE L1 -1373 4773 4402 614 146 0 10 chr3 88466046 88466142 -139058436 - AluSx SINE Alu -216 96 2 193 355 45 36 chr3 88466257 88466367 -139058211 - MIR SINE MIR -46 216 106 222 319 60 17 chr3 88466561 88466677 -139057901 + L2 LINE L2 2990 3110 -162 462 274 167 9 chr3 88466776 88466991 -139057587 - MIR SINE MIR -2 260 12 194 308 0 77 chr3 88466973 88467051 -139057527 + L2 LINE L2 3241 3312 -1 * 525 261 0 0 chr3 88467091 88467271 -139057307 + (TGGA)n Simple_repeat Simple_repeat 1 180 0 285 271 14 0 chr3 88467280 88467350 -139057228 + (TGGG)n Simple_repeat Simple_repeat 4 74 0 658 169 0 13 chr3 88467350 88467504 -139057074 + (TGGA)n Simple_repeat Simple_repeat 1 152 0 364 287 132 0 chr3 88468543 88468672 -139055906 + MIR SINE MIR 6 151 -111 343 277 99 78 chr3 88468672 88469084 -139055494 - L2 LINE L2 -2 3270 2850 2048 112 58 10 chr3 88469363 88469657 -139054921 + AluSq SINE Alu 1 308 -5 771 214 6 6 chr3 88470348 88470530 -139054048 + MER53 DNA DNA 8 189 0 336 278 9 46 chr3 88471124 88471232 -139053346 - MIR SINE MIR -70 192 89 307 354 71 17 chr3 88471535 88471832 -139052746 + L1ME3A LINE L1 5611 5926 -244 2202 70 3 0 chr3 88471905 88472189 -139052389 + L1PA8 LINE L1 5886 6170 -2 1486 135 29 147 chr3 88472303 88472651 -139051927 - AluSg SINE Alu -3 307 1 1977 135 21 0 chr3 88473270 88473552 -139051026 - AluSx SINE Alu -22 290 3 732 193 0 0 chr3 88473774 88474110 -139050468 + (CTAAG)n Simple_repeat Simple_repeat 1 336 0 993 188 25 0 chr3 88474896 88475093 -139049485 - MER58A DNA MER1_type -14 210 9 2703 121 56 36 chr3 88475500 88475676 -139048902 + L1MA8 LINE L1 5775 5946 -345 1834 180 6 3 chr3 88475676 88475987 -139048591 + AluJo SINE Alu 1 312 0 2703 121 56 36 chr3 88475987 88476314 -139048264 + L1MA8 LINE L1 5946 6288 -3 25 0 0 0 chr3 88476349 88476374 -139048204 + AT_rich Low_complexity Low_complexity 1 25 0 2243 110 7 13 chr3 88476379 88476688 -139047890 - AluSx SINE Alu -3 309 3 25 31 0 0 chr3 88476888 88476920 -139047658 + AT_rich Low_complexity Low_complexity 1 32 0 1387 123 59 0 chr3 88476920 88477124 -139047454 + AluSx SINE Alu 1 216 -96 230 371 69 0 chr3 88477124 88477356 -139047222 + L2 LINE L2 2124 2371 -943 2095 130 0 0 chr3 88478464 88478769 -139045809 + AluSx SINE Alu 1 305 0 457 267 62 36 chr3 88478771 88478966 -139045612 - MIR SINE MIR -32 230 31 746 221 30 91 chr3 88478984 88479215 -139045363 + MER20 DNA MER1_type 1 217 -2 1414 175 91 33 chr3 88480530 88480804 -139043774 - AluJb SINE Alu -22 290 1 650 286 20 40 chr3 88480887 88481135 -139043443 - MIR SINE MIR -12 250 8 417 278 103 76 chr3 88483282 88483728 -139040850 - L2 LINE L2 -11 3261 2804 269 292 97 9 chr3 88484203 88484316 -139040262 + L2 LINE L2 3178 3300 -13 540 258 16 0 chr3 88484406 88484530 -139040048 - MIR SINE MIR -38 224 99 2592 228 65 7 chr3 88484546 88485143 -139039435 + ERVL LTR ERVL 1518 2149 -3615 2284 110 3 0 chr3 88485460 88485768 -139038810 + AluSc SINE Alu 1 309 0 2403 82 0 0 chr3 88486002 88486295 -139038283 - AluY SINE Alu -14 297 5 252 158 0 0 chr3 88486945 88487002 -139037576 + GA-rich Low_complexity Low_complexity 2 58 0 1469 157 36 16 chr3 88487071 88487320 -139037258 + AluJo SINE Alu 42 295 -17 393 282 166 18 chr3 88487322 88487485 -139037093 - L2 LINE L2 -609 2705 2519 297 235 12 35 chr3 88487494 88487579 -139036999 + MER5A DNA MER1_type 107 189 0 1986 130 27 7 chr3 88487891 88488190 -139036388 + AluSq SINE Alu 1 305 -8 297 280 9 37 chr3 88488256 88488363 -139036215 - L2 LINE L2 -249 3023 2920 319 288 264 12 chr3 88488453 88488877 -139035701 - L2 LINE L2 -541 2773 2243 234 0 0 0 chr3 88489127 88489153 -139035425 + (CAA)n Simple_repeat Simple_repeat 2 27 0 4291 114 190 79 chr3 88490181 88491577 -139033001 + pTR5 LTR ERV1 743 2438 0 202 294 118 12 chr3 88491685 88491770 -139032808 + MIR SINE MIR 57 150 -58 228 276 41 0 chr3 88491855 88491953 -139032625 + L1M4 LINE L1 2425 2526 -3620 449 249 183 45 chr3 88491989 88492372 -139032206 + MLT1J2 LTR MaLR 1 448 -2 491 264 81 35 chr3 88492449 88492486 -139032092 + L1M4 LINE L1 2678 2712 -3434 231 61 0 0 chr3 88492486 88492519 -139032059 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 491 264 81 35 chr3 88492519 88492742 -139031836 + L1M4 LINE L1 2712 2950 -3196 377 212 20 10 chr3 88492766 88492865 -139031713 - L1M4 LINE L1 -1424 4722 4623 2121 110 6 41 chr3 88493986 88494303 -139030275 - AluSg SINE Alu -2 308 3 3204 209 16 75 chr3 88495237 88496266 -139028312 - LTR5 LTR ERVK 0 969 1 26 0 0 0 chr3 88496717 88496743 -139027835 + AT_rich Low_complexity Low_complexity 1 26 0 1899 246 35 27 chr3 88496768 88497020 -139027558 - L1MB3 LINE L1 -30 6153 5904 1986 146 0 3 chr3 88497020 88497314 -139027264 - AluSx SINE Alu -17 295 3 1899 246 35 27 chr3 88497314 88497441 -139027137 - L1MB3 LINE L1 -279 5904 5779 1844 138 0 21 chr3 88497441 88497732 -139026846 - AluSx SINE Alu -17 295 11 1899 246 35 27 chr3 88497732 88498732 -139025846 - L1MB3 LINE L1 -404 5779 4818 2093 108 3 16 chr3 88498777 88499083 -139025495 + AluSp SINE Alu 1 302 -11 1430 202 3 72 chr3 88499167 88499369 -139025209 - L1MA4 LINE L1 -175 6125 5961 1745 153 0 4 chr3 88499369 88499650 -139024928 - AluSx SINE Alu -32 280 1 1430 202 3 72 chr3 88499650 88499833 -139024745 - L1MA4 LINE L1 -339 5961 5767 2091 128 0 34 chr3 88500016 88500337 -139024241 + AluSp SINE Alu 1 310 -3 345 213 73 87 chr3 88500487 88500637 -139023941 + MER5B DNA MER1_type 25 172 -6 718 228 46 0 chr3 88500742 88500939 -139023639 - MER6B DNA MER2_type 0 210 5 1258 151 27 14 chr3 88502833 88503052 -139021526 + AluSq SINE Alu 1 222 -91 891 224 279 3 chr3 88503056 88503386 -139021192 + SATR1 Satellite Satellite 48 468 -2 1238 153 279 51 chr3 88503415 88503788 -139020790 + SATR1 Satellite Satellite 12 469 -1 815 245 179 60 chr3 88503817 88504294 -139020284 + SATR1 Satellite Satellite 1 533 -2 2284 190 110 16 chr3 88504331 88506624 -139017954 + SATR1 Satellite Satellite 1 2507 -20 29043 96 11 13 chr3 88506624 88510692 -139013886 - HERVE LTR ERV1 -2648 5165 1108 220 240 0 31 chr3 88510929 88511025 -139013553 + (TAA)n Simple_repeat Simple_repeat 1 93 0 2104 206 117 8 chr3 88511045 88513249 -139011329 - SATR1 Satellite Satellite 0 2444 1 310 250 6 39 chr3 88513258 88513414 -139011164 + (TAA)n Simple_repeat Simple_repeat 1 151 0 207 228 13 57 chr3 88513448 88513606 -139010972 + (TAA)n Simple_repeat Simple_repeat 1 151 0 2083 204 120 17 chr3 88513631 88515486 -139009092 - SATR1 Satellite Satellite 0 2046 1 280 245 6 57 chr3 88515495 88515654 -139008924 + (TAA)n Simple_repeat Simple_repeat 1 151 0 24 32 0 0 chr3 88515706 88515737 -139008841 + AT_rich Low_complexity Low_complexity 1 31 0 1936 189 130 18 chr3 88515873 88516852 -139007726 + SATR1 Satellite Satellite 1 1088 -207 297 242 140 31 chr3 88516856 88517162 -139007416 - MLT1E3 LTR MaLR -227 397 13 2134 101 28 0 chr3 88517171 88517458 -139007120 + AluSx SINE Alu 1 295 -17 579 267 0 0 chr3 88517468 88517584 -139006994 + FLAM_C SINE Alu 2 117 -26 728 22 11 0 chr3 88517584 88517674 -139006904 + (TAAAA)n Simple_repeat Simple_repeat 3 93 0 363 274 0 32 chr3 88517676 88517800 -139006778 - MLT1E LTR MaLR -473 120 1 684 228 58 0 chr3 88517837 88518043 -139006535 - L1MEd LINE L1 -5326 793 576 2244 114 0 0 chr3 88518054 88518344 -139006234 - AluSq SINE Alu -21 292 3 2058 132 10 0 chr3 88518553 88518841 -139005737 + AluSx SINE Alu 1 291 -21 1547 207 2 19 chr3 88519495 88519658 -139004920 - L1M4 LINE L1 -521 5653 5496 2232 123 0 7 chr3 88519658 88519967 -139004611 - AluSx SINE Alu -5 307 1 1547 207 2 19 chr3 88519967 88520129 -139004449 - L1M4 LINE L1 -678 5496 5333 1006 273 126 29 chr3 88520132 88520553 -139004025 + L1ME1 LINE L1 5652 6113 -53 1086 212 0 26 chr3 88520625 88520851 -139003727 + AluJo SINE Alu 1 220 -92 365 130 0 0 chr3 88520851 88520905 -139003673 + AluSx SINE Alu 86 139 -163 1220 137 11 0 chr3 88521783 88521958 -139002620 + AluSx SINE Alu 130 306 -6 881 169 0 20 chr3 88521962 88522110 -139002468 + FRAM SINE Alu 2 146 -30 674 63 21 0 chr3 88522112 88522207 -139002371 + (CATA)n Simple_repeat Simple_repeat 2 98 0 2626 157 13 20 chr3 88522502 88522955 -139001623 - L1MA7 LINE L1 -227 6064 5615 1059 153 88 0 chr3 88522955 88523166 -139001412 + L1MA7 LINE L1 6051 6285 -6 264 59 0 0 chr3 88524033 88524067 -139000511 + (TTTTC)n Simple_repeat Simple_repeat 2 35 0 218 227 0 171 chr3 88524151 88524239 -139000339 - L2 LINE L2 -27 3245 3173 3560 189 23 82 chr3 88525115 88526144 -138998434 - LTR5 LTR ERVK 0 969 1 1057 180 0 0 chr3 88526146 88526324 -138998254 - HERVK LTR ERVK -2 7241 7064 214 200 0 42 chr3 88526465 88526560 -138998018 + CT-rich Low_complexity Low_complexity 2 92 0 2594 109 13 3 chr3 88526657 88527034 -138997544 - HERVK LTR ERVK -1707 5536 5156 1054 126 29 0 chr3 88527434 88527608 -138996970 - L1MA4 LINE L1 -12 6288 6110 5703 158 26 13 chr3 88527616 88528764 -138995814 + L1PB1 LINE L1 4295 5472 -679 2311 117 0 0 chr3 88528764 88529072 -138995506 + AluSg SINE Alu 1 308 -2 5703 158 26 13 chr3 88529072 88529761 -138994817 + L1PB1 LINE L1 5472 6151 0 829 156 111 8 chr3 88529766 88529976 -138994602 - L1MA4 LINE L1 -175 6125 5899 3472 143 12 32 chr3 88530035 88530849 -138993729 - L1MA4A LINE L1 -373 5927 4961 14106 194 31 29 chr3 88530852 88531297 -138993281 - L1 LINE L1 -940 5908 5465 204 40 0 0 chr3 88531297 88531322 -138993256 + (TA)n Simple_repeat Simple_repeat 2 26 0 243 0 0 0 chr3 88531322 88531349 -138993229 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2304 78 7 10 chr3 88531351 88531647 -138992931 - AluY SINE Alu -16 295 1 14106 194 31 29 chr3 88531647 88532142 -138992436 - L1 LINE L1 -1383 5465 4972 2118 134 13 0 chr3 88532142 88532440 -138992138 - AluSx SINE Alu -10 302 1 14106 194 31 29 chr3 88532440 88534643 -138989935 - L1 LINE L1 -1876 4972 2775 2047 158 48 20 chr3 88534643 88534997 -138989581 + THE1B LTR MaLR 1 364 0 10739 120 16 11 chr3 88534997 88536569 -138988009 + THE1B-int LTR MaLR 1 1580 0 2131 134 48 31 chr3 88536569 88536927 -138987651 + THE1B LTR MaLR 1 364 0 14106 194 31 29 chr3 88536927 88537179 -138987399 - L1 LINE L1 -4073 2775 2525 931 195 6 0 chr3 88537179 88537338 -138987240 - FRAM SINE Alu -6 160 1 14106 194 31 29 chr3 88537338 88538385 -138986193 - L1 LINE L1 -4323 2525 1468 1978 108 3 50 chr3 88538385 88538708 -138985870 - AluSg SINE Alu 0 310 3 14106 194 31 29 chr3 88538708 88539122 -138985456 - L1 LINE L1 -5380 1468 1056 232 320 13 0 chr3 88539249 88539324 -138985254 - MLT1L LTR MaLR -392 223 148 866 275 9 0 chr3 88539339 88539557 -138985021 - MER58A DNA MER1_type -1 223 4 1478 200 24 3 chr3 88539674 88539969 -138984609 + AluJo SINE Alu 1 301 -11 366 224 53 0 chr3 88540171 88540247 -138984331 - MLT1H LTR MaLR -16 533 454 * 585 266 104 57 chr3 88540245 88540542 -138984036 - MLT1H LTR MaLR -198 351 41 1931 131 3 3 chr3 88541497 88541794 -138982784 + AluSc SINE Alu 1 297 -12 686 232 56 26 chr3 88542055 88542288 -138982290 + Charlie5 DNA MER1_type 2331 2570 -42 1973 189 24 0 chr3 88542456 88542832 -138981746 + L1MB7 LINE L1 5575 5959 -219 1148 98 75 0 chr3 88542832 88543005 -138981573 + AluSg/x SINE Alu 104 289 -23 892 223 35 0 chr3 88543010 88543212 -138981366 + L1MB7 LINE L1 5976 6184 0 315 312 52 72 chr3 88543214 88543361 -138981217 - L2 LINE L2 -265 3048 2907 2074 134 0 0 chr3 88543361 88543666 -138980912 - AluSq SINE Alu -8 305 1 315 312 52 72 chr3 88543666 88543768 -138980810 - L2 LINE L2 -406 2907 2804 232 277 0 31 chr3 88543809 88543874 -138980704 + MIR SINE MIR 88 150 -112 2080 99 0 0 chr3 88543924 88544248 -138980330 - AluY SINE Alu 0 324 1 1390 163 0 5 chr3 88544365 88544586 -138979992 + AluSx SINE Alu 1 220 -92 282 114 0 0 chr3 88544783 88544827 -138979751 - MER5B DNA MER1_type 0 178 135 574 216 182 23 chr3 88544842 88545018 -138979560 - L1MB5 LINE L1 -287 5887 5684 * 1227 170 25 57 chr3 88544988 88545270 -138979308 + L1MB5 LINE L1 5902 6174 0 2011 148 0 0 chr3 88545275 88545586 -138978992 + AluSx SINE Alu 2 312 0 616 198 8 24 chr3 88545600 88545726 -138978852 - MER5B DNA MER1_type -50 128 5 269 322 27 34 chr3 88545812 88545958 -138978620 + MER5A DNA MER1_type 2 146 -43 199 267 69 59 chr3 88546019 88546084 -138978494 - L2 LINE L2 -17 3255 3187 1771 159 17 0 chr3 88546084 88546373 -138978205 + AluSx SINE Alu 1 294 -18 199 267 69 59 chr3 88546373 88546408 -138978170 - L2 LINE L2 -85 3187 3154 2080 184 133 11 chr3 88546657 88547107 -138977471 - MLT1E LTR MaLR 0 593 89 7917 38 6 2 chr3 88547107 88548076 -138976502 - L1P LINE L1 -896 5250 4278 480 119 8 151 chr3 88548106 88548232 -138976346 + LTR2B LTR ERV1 275 382 -108 1161 114 0 34 chr3 88548233 88548409 -138976169 - AluSc SINE Alu -139 170 1 1696 213 178 47 chr3 88548539 88549117 -138975461 + MLT1E1 LTR MaLR 1 654 0 2088 115 0 3 chr3 88549128 88549423 -138975155 + AluSc SINE Alu 1 294 -15 243 351 41 18 chr3 88549471 88549618 -138974960 - MIR3 SINE MIR -54 154 46 2032 130 0 0 chr3 88549791 88550083 -138974495 + AluSc SINE Alu 1 292 -17 403 314 35 58 chr3 88550083 88550309 -138974269 - MIR SINE MIR -41 221 1 1978 141 0 0 chr3 88550360 88550659 -138973919 + AluSx SINE Alu 1 299 -13 858 242 43 77 chr3 88550828 88551084 -138973494 + MLT1I LTR MaLR 87 331 -78 1703 169 30 3 chr3 88551084 88551379 -138973199 + AluSx SINE Alu 1 303 -9 858 242 43 77 chr3 88551379 88551449 -138973129 + MLT1I LTR MaLR 331 402 -7 460 302 7 22 chr3 88551782 88551921 -138972657 - L2 LINE L2 0 3272 3136 4099 61 42 50 chr3 88551948 88553019 -138971559 - MER11A LTR ERVK 0 1266 1 1021 310 93 47 chr3 88553028 88553728 -138970850 - L2 LINE L2 -212 3101 2347 1531 153 0 94 chr3 88553728 88554048 -138970530 - AluJo SINE Alu -12 290 1 1021 310 93 47 chr3 88554048 88554282 -138970296 - L2 LINE L2 -966 2347 2125 230 370 20 34 chr3 88554943 88555089 -138969489 + L3 LINE CR1 1053 1196 -381 883 119 8 0 chr3 88555113 88555239 -138969339 + AluSq/x SINE Alu 9 135 -177 2078 126 10 3 chr3 88555239 88555549 -138969029 + AluSq SINE Alu 1 312 -1 1075 190 5 46 chr3 88555589 88555705 -138968873 + MER58A DNA MER1_type 1 105 -2315 2472 141 78 0 chr3 88555705 88556102 -138968476 - MSTA LTR MaLR 0 428 1 1075 190 5 46 chr3 88556102 88556201 -138968377 + MER58A DNA MER1_type 105 207 -17 214 313 117 11 chr3 88556224 88556403 -138968175 + L3 LINE CR1 1180 1377 -200 4094 91 14 4 chr3 88556410 88556962 -138967616 + LTR6B LTR ERV1 1 558 0 21564 128 23 18 chr3 88556964 88560180 -138964398 + HERVS71 LTR ERV1 4 3236 -5742 6310 133 18 0 chr3 88560189 88561828 -138962750 + HERVS71 LTR ERV1 4870 6603 -2375 * 6709 145 2 0 chr3 88561825 88562807 -138961771 + HERVS71 LTR ERV1 6803 7786 -1192 2228 117 0 3 chr3 88562804 88563121 -138961457 + HERVS71 LTR ERV1 8594 8909 -69 * 3859 52 2 6 chr3 88563121 88563601 -138960977 + LTR6B LTR ERV1 1 478 -80 553 115 0 0 chr3 88563704 88563782 -138960796 + LTR6B LTR ERV1 481 558 0 2194 101 3 0 chr3 88564038 88564335 -138960243 - AluSp SINE Alu -13 300 3 348 261 199 24 chr3 88564956 88565167 -138959411 - MLT1H LTR MaLR 0 595 348 1831 103 174 92 chr3 88565323 88565691 -138958887 - MER4A LTR ERV1 -6 658 261 434 121 0 15 chr3 88565691 88565757 -138958821 - MER4A LTR ERV1 -566 98 34 1775 103 11 26 chr3 88565758 88566029 -138958549 - AluSx SINE Alu -17 295 29 620 65 0 0 chr3 88566029 88566106 -138958472 - AluS SINE Alu -234 78 2 279 139 0 0 chr3 88566107 88566150 -138958428 - MER4A LTR ERV1 -620 44 2 440 246 66 12 chr3 88566150 88566318 -138958260 - MLT1H LTR MaLR -356 193 12 315 0 0 0 chr3 88566318 88566353 -138958225 + (CA)n Simple_repeat Simple_repeat 1 35 0 453 45 0 0 chr3 88566548 88566615 -138957963 + L1HS LINE L1 6089 6155 0 1164 75 0 0 chr3 88566723 88566869 -138957709 - AluSg SINE Alu -15 295 150 815 58 10 0 chr3 88566870 88566973 -138957605 - AluSg SINE Alu -197 113 10 351 283 48 73 chr3 88567173 88567445 -138957133 + MLT1K LTR MaLR 180 444 -144 1924 132 6 10 chr3 88567590 88567901 -138956677 + AluSg SINE Alu 1 310 0 1138 296 23 0 chr3 88567906 88568210 -138956368 + LTR16C LTR ERVL 164 474 -17 237 205 64 39 chr3 88568229 88568307 -138956271 + MLT1K LTR MaLR 508 587 -1 2054 118 20 0 chr3 88568729 88569033 -138955545 + AluSx SINE Alu 1 310 -2 642 223 54 24 chr3 88569799 88569965 -138954613 - MLT1I LTR MaLR -7 402 232 254 268 125 27 chr3 88570217 88570329 -138954249 - MIR SINE MIR -137 125 3 322 244 8 59 chr3 88570714 88570833 -138953745 - MER58C DNA MER1_type 0 215 103 1382 205 36 44 chr3 88570844 88571205 -138953373 + L1MB5 LINE L1 5813 6170 -4 1342 191 29 18 chr3 88571218 88571496 -138953082 - AluJo SINE Alu -30 282 2 1905 120 3 42 chr3 88571665 88571974 -138952604 - AluJb SINE Alu -11 301 5 2165 112 0 0 chr3 88572135 88572429 -138952149 - AluSx SINE Alu -18 294 1 583 208 39 0 chr3 88572436 88572566 -138952012 - L1MB4 LINE L1 0 6180 6046 1200 191 25 39 chr3 88573079 88573361 -138951217 - AluJo SINE Alu -34 278 1 1893 156 0 6 chr3 88573386 88573700 -138950878 + AluSx SINE Alu 1 312 0 403 328 65 13 chr3 88573774 88574006 -138950572 + L2 LINE L2 2710 2953 -361 284 261 102 9 chr3 88574159 88574288 -138950290 - L2 LINE L2 -247 3066 2916 43066 58 3 4 chr3 88574395 88580557 -138944021 + L1PA5 LINE L1 1 6154 0 2111 130 0 0 chr3 88580977 88581278 -138943300 + AluSx SINE Alu 1 301 -11 1147 206 28 16 chr3 88581321 88581568 -138943010 - MLT1E1 LTR MaLR 0 654 405 2122 106 0 0 chr3 88581588 88581895 -138942683 + AluSx SINE Alu 1 307 0 1029 191 98 8 chr3 88581925 88582171 -138942407 - MLT1E1 LTR MaLR -384 270 3 2348 76 7 0 chr3 88582457 88582761 -138941817 + AluY SINE Alu 1 306 -5 1571 206 42 65 chr3 88582765 88583149 -138941429 - MLT1C LTR MaLR 0 467 95 2306 97 3 0 chr3 88583149 88583459 -138941119 - AluSp SINE Alu -2 311 1 1571 206 42 65 chr3 88583459 88583550 -138941028 - MLT1C LTR MaLR -372 95 3 357 252 40 6 chr3 88583562 88583650 -138940928 + AluJ/FLAM SINE Alu 1 75 -227 1392 180 31 41 chr3 88583674 88583968 -138940610 + AluJo SINE Alu 6 296 -16 236 226 0 32 chr3 88584150 88584212 -138940366 - MLT1K LTR MaLR -111 477 418 249 284 119 60 chr3 88584249 88584467 -138940111 - MLT1K LTR MaLR -325 263 33 398 269 92 31 chr3 88585259 88585389 -138939189 - MER91C DNA MER1_type 0 140 3 1232 157 5 22 chr3 88585527 88585750 -138938828 - MER20 DNA MER1_type 0 219 1 1650 174 0 30 chr3 88586150 88586454 -138938124 + AluJo SINE Alu 12 306 -6 1988 122 14 0 chr3 88586458 88586753 -138937825 + AluY SINE Alu 1 299 -12 2005 202 118 5 chr3 88586884 88587980 -138936598 - SATR1 Satellite Satellite 0 1219 1 310 250 6 39 chr3 88587989 88588145 -138936433 + (TAA)n Simple_repeat Simple_repeat 1 151 0 207 228 13 57 chr3 88588179 88588337 -138936241 + (TAA)n Simple_repeat Simple_repeat 1 151 0 2098 205 120 18 chr3 88588362 88590217 -138934361 - SATR1 Satellite Satellite 0 2044 1 280 245 6 57 chr3 88590226 88590385 -138934193 + (TAA)n Simple_repeat Simple_repeat 1 151 0 24 32 0 0 chr3 88590437 88590468 -138934110 + AT_rich Low_complexity Low_complexity 1 31 0 1946 190 130 18 chr3 88590604 88591583 -138932995 + SATR1 Satellite Satellite 1 1088 -207 312 242 140 31 chr3 88591587 88591893 -138932685 - MLT1E3 LTR MaLR -227 397 13 2008 101 28 0 chr3 88591902 88592189 -138932389 + AluSx SINE Alu 1 295 -17 584 267 0 0 chr3 88592199 88592380 -138932198 + FLAM_C SINE Alu 2 182 0 365 274 0 32 chr3 88592382 88592506 -138932072 - MLT1E LTR MaLR -473 120 1 1071 270 68 46 chr3 88592543 88592760 -138931818 - L1MEd LINE L1 -5326 793 582 2020 93 17 7 chr3 88592760 88593049 -138931529 - AluSq SINE Alu -21 292 1 1071 270 68 46 chr3 88593049 88593286 -138931292 - L1MEd LINE L1 -5537 582 329 643 224 29 86 chr3 88593347 88593460 -138931118 - L1MEd LINE L1 -5899 220 102 333 0 0 0 chr3 88593460 88593497 -138931081 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 2061 105 11 0 chr3 88593502 88593788 -138930790 - AluSq SINE Alu -24 289 1 643 224 29 86 chr3 88593788 88593878 -138930700 - L1MEd LINE L1 -6021 98 23 2206 114 0 6 chr3 88593945 88594260 -138930318 + AluSq SINE Alu 1 313 0 264 284 15 0 chr3 88597454 88597521 -138927057 + MER112 DNA MER1_type 18 85 -175 1526 134 32 0 chr3 88597606 88597853 -138926725 - AluJo SINE Alu -57 255 1 1996 134 0 6 chr3 88597863 88598177 -138926401 - AluSx SINE Alu 0 312 1 2126 99 3 13 chr3 88598201 88598514 -138926064 - AluSq SINE Alu -3 310 1 22 65 0 0 chr3 88600798 88600829 -138923749 + GC_rich Low_complexity Low_complexity 1 31 0 332 263 11 42 chr3 88601186 88601397 -138923181 + SATR1 Satellite Satellite 1 204 -148 295 167 37 0 chr3 88601375 88601429 -138923149 - MLT2B3 LTR ERVL -496 58 3 * 1453 215 20 27 chr3 88601432 88601879 -138922699 + MER31-int LTR ERV1 1063 1506 -3430 1157 209 102 59 chr3 88602481 88602992 -138921586 + MER31-int LTR ERV1 1699 2231 -2705 3211 206 40 78 chr3 88603006 88603176 -138921402 + MER31-int LTR ERV1 2939 3114 -1822 2199 101 0 0 chr3 88603176 88603472 -138921106 + AluY SINE Alu 2 297 -14 3211 206 40 78 chr3 88603472 88604273 -138920305 + MER31-int LTR ERV1 3114 3873 -1063 258 32 0 0 chr3 88604329 88604360 -138920218 + (TG)n Simple_repeat Simple_repeat 2 32 0 1262 260 50 14 chr3 88604382 88604744 -138919834 + LTR10C LTR ERV1 188 562 -29 2098 187 26 70 chr3 88604781 88605208 -138919370 + MER31-int LTR ERV1 3859 4259 -677 1505 158 90 0 chr3 88605208 88605474 -138919104 + AluJb SINE Alu 1 290 -22 2098 187 26 70 chr3 88605474 88605587 -138918991 + MER31-int LTR ERV1 4259 4375 -561 3357 227 100 7 chr3 88605714 88606119 -138918459 + L1MC3 LINE L1 5762 6128 -1657 1808 185 31 59 chr3 88606119 88606563 -138918015 + MSTB1 LTR MaLR 1 432 0 3357 227 100 7 chr3 88606563 88607113 -138917465 + L1MC3 LINE L1 6128 6806 -979 183 80 0 0 chr3 88613235 88613260 -138911318 + (CA)n Simple_repeat Simple_repeat 2 26 0 959 253 0 27 chr3 88613266 88613523 -138911055 - AluJo SINE Alu -62 250 1 385 158 0 0 chr3 88613559 88613648 -138910930 + AluJ/FRAM SINE Alu 226 314 0 219 330 22 33 chr3 88614322 88614404 -138910174 + MIR SINE MIR 54 136 -72 6834 69 10 25 chr3 88614404 88615075 -138909503 + L1PA8 LINE L1 4679 5359 -813 1895 156 0 13 chr3 88615075 88615389 -138909189 + AluSg SINE Alu 1 310 0 6834 69 10 25 chr3 88615389 88616214 -138908364 + L1PA8 LINE L1 5359 6170 -2 2690 71 0 9 chr3 88616522 88616861 -138907717 - LTR17 LTR ERV1 0 780 445 787 79 0 0 chr3 88616861 88616962 -138907616 - AluY SINE Alu -209 102 2 3697 212 32 26 chr3 88616963 88618138 -138906440 + L1MB3 LINE L1 4891 6182 -1 351 317 0 0 chr3 88618144 88618264 -138906314 + L1ME3A LINE L1 5819 5938 -232 3118 128 19 6 chr3 88619645 88620121 -138904457 + LTR43 LTR ERV1 121 602 0 2088 268 71 57 chr3 88620121 88621271 -138903307 + LTR43-int LTR ERV1 1 2205 -3842 311 176 0 0 chr3 88621835 88621886 -138902692 + LTR43-int LTR ERV1 3842 3892 -906 * 3047 204 52 29 chr3 88621882 88622540 -138902038 + LTR43-int LTR ERV1 4125 4797 -1 3452 152 16 30 chr3 88622556 88622602 -138901976 + LTR43 LTR ERV1 6 51 -551 5681 139 20 14 chr3 88622602 88623566 -138901012 + LTR5 LTR ERVK 1 969 0 3452 152 16 30 chr3 88623566 88623747 -138900831 + LTR43 LTR ERV1 51 233 -369 1823 161 3 0 chr3 88623747 88624045 -138900533 + AluSx SINE Alu 1 299 -13 3452 152 16 30 chr3 88624045 88624421 -138900157 + LTR43 LTR ERV1 233 602 0 694 267 3 40 chr3 88624421 88625086 -138899492 + BSR/Beta Satellite Satellite 1 640 -62 1395 285 27 7 chr3 88625109 88625612 -138898966 - BSR/Beta Satellite Satellite -7 513 1 793 233 18 33 chr3 88625665 88627031 -138897547 - BSR/Beta Satellite Satellite -15 1346 1 428 348 10 0 chr3 88627069 88627428 -138897150 - BSR/Beta Satellite Satellite 0 362 1 653 47 23 0 chr3 88627449 88627535 -138897043 + AluSg/x SINE Alu 217 304 -6 273 163 90 3 chr3 88627784 88627851 -138896727 + L1MA6 LINE L1 6218 6291 -9 2386 176 58 2 chr3 88627881 88628307 -138896271 - L1MA6 LINE L1 -68 6232 5776 264 30 0 0 chr3 88628307 88628340 -138896238 + (TG)n Simple_repeat Simple_repeat 2 34 0 2386 176 58 2 chr3 88628340 88628378 -138896200 - L1MA6 LINE L1 -524 5776 5742 1105 138 5 62 chr3 88628374 88628584 -138895994 + L1MA6 LINE L1 5527 5724 -576 * 389 325 85 68 chr3 88628653 88629065 -138895513 - L1MEd LINE L1 -4898 1221 803 225 0 0 0 chr3 88630808 88630833 -138893745 + (TTG)n Simple_repeat Simple_repeat 1 25 0 204 67 0 0 chr3 88630869 88630899 -138893679 + (TTG)n Simple_repeat Simple_repeat 2 31 0 3664 213 61 20 chr3 88633278 88635186 -138889392 - L1MA9 LINE L1 0 6312 4255 22 0 0 0 chr3 88636419 88636441 -138888137 + AT_rich Low_complexity Low_complexity 1 22 0 32 43 0 0 chr3 88636771 88636817 -138887761 + AT_rich Low_complexity Low_complexity 1 46 0 2050 116 0 10 chr3 88636883 88637194 -138887384 - AluSg SINE Alu -2 308 1 4328 209 39 18 chr3 88637199 88639119 -138885459 - L1PB4 LINE L1 0 6156 4190 269 293 40 0 chr3 88639147 88639246 -138885332 + MER5B DNA MER1_type 75 177 -1 1699 164 7 7 chr3 88639270 88639575 -138885003 - AluSq SINE Alu 0 313 9 22 0 0 0 chr3 88639581 88639603 -138884975 + AT_rich Low_complexity Low_complexity 1 22 0 861 143 0 0 chr3 88639603 88639736 -138884842 - AluSq/x SINE Alu -179 133 1 35 24 0 0 chr3 88639810 88639852 -138884726 + AT_rich Low_complexity Low_complexity 1 42 0 21 71 0 0 chr3 88639922 88639964 -138884614 + AT_rich Low_complexity Low_complexity 1 42 0 33 73 0 0 chr3 88640252 88640320 -138884258 + AT_rich Low_complexity Low_complexity 1 68 0 1445 155 59 26 chr3 88643663 88643934 -138880644 - AluSx SINE Alu -19 293 14 542 174 42 141 chr3 88644615 88644856 -138879722 - Tigger1 DNA MER2_type 0 2418 2202 272 290 11 0 chr3 88644887 88645077 -138879501 + GA-rich Low_complexity Low_complexity 1 192 0 366 199 0 96 chr3 88646092 88646228 -138878350 - LSAU Satellite Satellite -374 124 2 21 36 0 0 chr3 88647470 88647498 -138877080 + GC_rich Low_complexity Low_complexity 1 28 0 404 324 13 7 chr3 88647639 88647941 -138876637 - LSAU Satellite Satellite -172 304 1 191 209 0 47 chr3 88648025 88648111 -138876467 + GA-rich Low_complexity Low_complexity 1 82 0 202 306 18 0 chr3 88648941 88649052 -138875526 + (CA)n Simple_repeat Simple_repeat 2 114 0 753 186 0 8 chr3 88649082 88649335 -138875243 + GA-rich Low_complexity Low_complexity 1 250 0 15961 188 33 32 chr3 88650049 88653279 -138871299 - L1M1 LINE L1 -4311 3254 24 3174 149 62 2 chr3 88653295 88653840 -138870738 - LTR49-int LTR ERV1 -1975 5562 4985 24 0 0 0 chr3 88654039 88654063 -138870515 + AT_rich Low_complexity Low_complexity 1 24 0 1929 121 0 0 chr3 88654114 88654387 -138870191 + AluSx SINE Alu 22 294 -18 380 225 50 64 chr3 88654446 88654770 -138869808 - LTR49-int LTR ERV1 -3000 1936 1710 409 198 0 35 chr3 88654868 88654954 -138869624 - LTR49-int LTR ERV1 -2885 3446 3364 382 274 0 9 chr3 88655024 88655130 -138869448 - LTR49-int LTR ERV1 -2991 3340 3236 1736 77 0 32 chr3 88655276 88655522 -138869056 - L1PA14 LINE L1 -12 6149 5912 251 94 0 0 chr3 88655523 88655555 -138869023 - L1PA14 LINE L1 -342 5813 5782 338 310 30 60 chr3 88655674 88655874 -138868704 - L1MC5 LINE L1 -105 7856 7663 434 294 144 0 chr3 88655949 88656102 -138868476 - MER5A DNA MER1_type 0 189 15 643 228 177 11 chr3 88656299 88656364 -138868214 - MLT1D LTR MaLR 0 484 431 1825 157 3 7 chr3 88656364 88656669 -138867909 + AluSx SINE Alu 1 304 -8 643 228 177 11 chr3 88656669 88656841 -138867737 - MLT1D LTR MaLR -53 431 206 1946 92 36 8 chr3 88656883 88657232 -138867346 + LTR7 LTR ERV1 1 448 -2 3158 84 5 9 chr3 88657234 88657672 -138866906 + HERVH LTR ERV1 1 436 -7277 5039 95 11 3 chr3 88657773 88658481 -138866097 + HERVH LTR ERV1 3280 3993 -3720 4346 145 1 5 chr3 88658483 88659144 -138865434 + HERVH LTR ERV1 4488 5146 -2567 1315 123 42 5 chr3 88659148 88659360 -138865218 + HERVH LTR ERV1 5600 5819 -1894 2335 106 48 16 chr3 88659360 88659738 -138864840 + HERVH LTR ERV1 7324 7713 0 2483 88 131 8 chr3 88659739 88660137 -138864441 + LTR7 LTR ERV1 2 448 -2 2204 100 3 0 chr3 88660149 88660450 -138864128 - AluSp SINE Alu -9 304 3 602 221 55 33 chr3 88660460 88660641 -138863937 - MLT1D LTR MaLR -320 185 1 288 339 25 17 chr3 88661824 88661942 -138862636 - L2 LINE L2 -15 3298 3180 1804 138 6 60 chr3 88661980 88662298 -138862280 + AluSx SINE Alu 1 301 -11 222 37 0 0 chr3 88662583 88662610 -138861968 + (CAT)n Simple_repeat Simple_repeat 3 29 0 753 152 80 8 chr3 88662720 88662845 -138861733 + THE1B LTR MaLR 196 329 -35 199 176 0 0 chr3 88663119 88663153 -138861425 + L2 LINE L2 3019 3052 -261 2271 91 0 3 chr3 88663394 88663701 -138860877 - AluY SINE Alu -4 307 2 450 94 0 0 chr3 88663824 88663888 -138860690 + (GA)n Simple_repeat Simple_repeat 1 64 0 2004 131 3 0 chr3 88664204 88664495 -138860083 - AluSg SINE Alu -18 292 1 1168 167 14 28 chr3 88664560 88664776 -138859802 + MER73 LTR ERVL 432 644 0 196 255 0 0 chr3 88665261 88665312 -138859266 - MER5B DNA MER1_type -81 97 47 932 144 0 0 chr3 88665318 88665450 -138859128 + FLAM_A SINE Alu 1 132 -1 254 200 19 45 chr3 88665507 88665573 -138859005 + MLT1F LTR MaLR 1 55 -487 * 401 216 0 0 chr3 88665572 88665646 -138858932 - MER66B LTR ERV1 -412 74 1 859 146 0 8 chr3 88666007 88666137 -138858441 + FLAM_C SINE Alu 1 129 -4 232 24 49 24 chr3 88666309 88666350 -138858228 + (TTTA)n Simple_repeat Simple_repeat 1 42 0 1537 161 29 4 chr3 88666350 88666623 -138857955 - AluSx SINE Alu -32 280 1 427 246 20 99 chr3 88667346 88667470 -138857108 + MER5B DNA MER1_type 3 140 -49 1792 177 0 0 chr3 88667470 88667781 -138856797 - AluJo SINE Alu -1 311 1 427 246 20 99 chr3 88667781 88667828 -138856750 + MER5B DNA MER1_type 140 189 0 357 252 28 22 chr3 88667842 88667991 -138856587 - MER5A DNA MER1_type 0 178 30 211 260 65 65 chr3 88667888 88668011 -138856567 + MER5A DNA MER1_type 60 182 -7 * 1303 222 108 35 chr3 88668399 88668475 -138856103 + MLT1C LTR MaLR 6 75 -392 1938 144 3 0 chr3 88668475 88668767 -138855811 + AluSx SINE Alu 5 297 -15 1303 222 108 35 chr3 88668767 88669118 -138855460 + MLT1C LTR MaLR 75 464 -3 2108 120 0 0 chr3 88669159 88669450 -138855128 + AluSp SINE Alu 1 291 -22 1971 113 6 44 chr3 88669675 88669994 -138854584 + AluSq SINE Alu 1 307 -6 262 246 18 0 chr3 88670175 88670232 -138854346 + AluJo SINE Alu 1 58 -244 3830 126 105 50 chr3 88670264 88670710 -138853868 + LTR1 LTR ERV1 1 506 -279 1864 57 0 4 chr3 88670710 88670940 -138853638 + AluY SINE Alu 16 244 -67 3830 126 105 50 chr3 88670940 88671237 -138853341 + LTR1 LTR ERV1 506 785 0 1375 144 0 88 chr3 88671240 88671524 -138853054 + AluJo SINE Alu 41 299 -13 1807 137 3 16 chr3 88672075 88672381 -138852197 + AluSx SINE Alu 1 302 -10 333 47 0 0 chr3 88672390 88672433 -138852145 + (CA)n Simple_repeat Simple_repeat 2 44 0 1746 193 0 0 chr3 88672550 88672861 -138851717 - AluJo SINE Alu -1 311 1 495 279 82 13 chr3 88673385 88673543 -138851035 + MIR SINE MIR 79 247 -15 362 272 76 0 chr3 88673572 88673664 -138850914 + L2 LINE L2 3162 3260 -12 487 302 24 17 chr3 88674055 88674234 -138850344 + MIR SINE MIR 42 224 -38 2253 102 0 0 chr3 88674249 88674554 -138850024 + AluSq SINE Alu 1 305 -8 3244 127 68 6 chr3 88674642 88675138 -138849440 + MER1A DNA MER1_type 1 527 0 778 186 9 91 chr3 88675158 88675309 -138849269 + MER3 DNA MER1_type 8 137 -72 2028 129 3 0 chr3 88675309 88675604 -138848974 - AluSx SINE Alu -16 296 1 778 186 9 91 chr3 88675604 88675672 -138848906 + MER3 DNA MER1_type 137 209 0 765 265 94 8 chr3 88675821 88676055 -138848523 - MIR SINE MIR -6 256 3 227 221 15 0 chr3 88677563 88677631 -138846947 - L1MCa LINE L1 -4362 2064 1996 * 232 250 0 43 chr3 88677590 88677682 -138846896 + L1MC4 LINE L1 6614 6701 -1341 229 238 71 0 chr3 88677638 88677722 -138846856 - L1MC4 LINE L1 -1339 6703 6614 * 2787 111 65 5 chr3 88677731 88678144 -138846434 - LTR66 LTR ERVL -172 438 1 2552 120 113 5 chr3 88678144 88678570 -138846008 - L1P4 LINE L1 -375 5786 5315 5370 114 18 2 chr3 88678573 88679374 -138845204 - L1PB1 LINE L1 0 6151 5339 3471 212 9 5 chr3 88679372 88680168 -138844410 + L1PB1 LINE L1 4552 5350 -796 * 11115 194 25 5 chr3 88680163 88682437 -138842141 - L1PB1 LINE L1 -812 5334 3016 21 0 0 0 chr3 88682748 88682769 -138841809 + AT_rich Low_complexity Low_complexity 1 21 0 210 147 0 0 chr3 88683354 88683388 -138841190 + (CA)n Simple_repeat Simple_repeat 2 35 0 325 250 0 0 chr3 88683394 88683474 -138841104 + MER103 DNA DNA 12 91 -75 276 230 23 11 chr3 88683535 88683622 -138840956 + L2 LINE L2 1996 2083 -1231 2602 195 23 0 chr3 88684750 88685272 -138839306 - L1PB4 LINE L1 -3 6153 5620 340 176 59 0 chr3 88685557 88685625 -138838953 + L2 LINE L2 3242 3313 0 2272 178 107 29 chr3 88685838 88686361 -138838217 + LTR6A LTR ERV1 1 564 0 182 263 0 0 chr3 88686908 88686946 -138837632 + L2 LINE L2 3268 3305 -8 271 250 167 0 chr3 88687067 88687139 -138837439 + L2 LINE L2 3230 3313 0 195 336 161 15 chr3 88687223 88687360 -138837218 - L2 LINE L2 -1 3271 3115 255 200 0 0 chr3 88688115 88688160 -138836418 - MLT1H1 LTR MaLR 0 590 546 23 92 0 0 chr3 88688163 88688228 -138836350 + AT_rich Low_complexity Low_complexity 1 65 0 646 262 128 86 chr3 88688262 88688667 -138835911 - MLT1H1 LTR MaLR -120 447 1 281 168 21 61 chr3 88689462 88689475 -138835103 - L1P LINE L1 -795 5371 5359 2352 76 0 0 chr3 88689475 88689778 -138834800 - AluY SINE Alu -8 303 1 281 168 21 61 chr3 88689778 88689846 -138834732 - L1P LINE L1 -807 5359 5290 * 3800 172 26 9 chr3 88689840 88690521 -138834057 + L1PA16 LINE L1 5390 6082 -84 672 125 0 19 chr3 88690526 88690630 -138833948 + L1PA16 LINE L1 6044 6145 -21 15289 234 56 20 chr3 88690641 88695674 -138828904 + L1MA2 LINE L1 17 4868 -2855 2200 137 0 0 chr3 88695674 88695981 -138828597 + AluSx SINE Alu 1 307 -5 15289 234 56 20 chr3 88695981 88696359 -138828219 + L1MA2 LINE L1 4868 5231 -2492 2154 205 33 12 chr3 88696359 88696778 -138827800 + MSTA LTR MaLR 1 428 0 8074 209 27 19 chr3 88696779 88698417 -138826161 + MSTA-int LTR MaLR 2 1651 0 1922 206 64 12 chr3 88698417 88698824 -138825754 + MSTA LTR MaLR 1 428 0 15289 234 56 20 chr3 88698824 88699176 -138825402 + L1MA2 LINE L1 5231 5569 -2154 2172 109 3 7 chr3 88699176 88699470 -138825108 + AluSg SINE Alu 1 293 -17 15289 234 56 20 chr3 88699470 88700128 -138824450 + L1MA2 LINE L1 5569 6202 -1521 2132 147 39 58 chr3 88700128 88700454 -138824124 + THE1C LTR MaLR 1 321 -54 2027 87 3 74 chr3 88700454 88700764 -138823814 + AluSg1 SINE Alu 2 289 -20 2132 147 39 58 chr3 88700764 88700819 -138823759 + THE1C LTR MaLR 321 375 0 15289 234 56 20 chr3 88700819 88701829 -138822749 + L1MA2 LINE L1 6202 7721 -2 761 162 103 0 chr3 88701856 88701992 -138822586 - MER4B LTR ERV1 -460 150 1 1733 185 7 0 chr3 88702313 88702621 -138821957 + AluSx SINE Alu 1 310 -2 732 295 6 0 chr3 88703231 88703404 -138821174 + MER41D LTR ERV1 384 557 0 4372 319 52 38 chr3 88704391 88706566 -138818012 + PRIMA41-int LTR ERV1 1274 3477 -4279 10232 64 0 14 chr3 88706571 88707872 -138816706 + L1P LINE L1 2 1284 -4862 2276 151 32 39 chr3 88707873 88708095 -138816483 - MSTB LTR MaLR -17 409 190 2044 142 6 3 chr3 88708095 88708406 -138816172 - AluSx SINE Alu 0 312 1 2276 151 32 39 chr3 88708406 88708593 -138815985 - MSTB LTR MaLR -236 190 3 1803 150 34 25 chr3 88708593 88708913 -138815665 - MER65A LTR ERV1 -121 324 2 2057 241 32 14 chr3 88708914 88709420 -138815158 - MER65A-int LTR ERV1 0 4871 4357 8741 56 21 0 chr3 88709558 88710675 -138813903 - L1P LINE L1 -819 5327 4188 8239 71 5 2 chr3 88710674 88711759 -138812819 + L1P LINE L1 3121 4208 -1938 * 805 101 7 0 chr3 88711759 88716413 -138808165 + CER Satellite Satellite 1 4686 0 6325 64 0 10 chr3 88716516 88717287 -138807291 + L1PA5 LINE L1 5386 6148 -6 1648 212 71 14 chr3 88717328 88717762 -138806816 + L1MA8 LINE L1 5769 6227 -64 685 129 0 0 chr3 88717763 88717921 -138806657 + CER Satellite Satellite 1 158 -4 29 28 0 0 chr3 88717954 88717990 -138806588 + AT_rich Low_complexity Low_complexity 1 36 0 693 97 37 0 chr3 88718013 88718178 -138806400 - CER Satellite Satellite -3 171 1 2132 257 20 28 chr3 88718184 88718794 -138805784 - L1MCa LINE L1 -5752 674 70 229 234 16 16 chr3 88718965 88719029 -138805549 - L1M4 LINE L1 -2278 3868 3805 384 337 98 28 chr3 88719037 88719322 -138805256 + L2 LINE L2 2065 2369 -945 1004 200 34 0 chr3 88719761 88719966 -138804612 - MER2 DNA MER2_type -3 342 131 465 221 48 0 chr3 88719967 88720071 -138804507 - Tigger3(Golem) DNA MER2_type 0 3038 2930 390 275 0 0 chr3 88720184 88720264 -138804314 - Tigger3(Golem) DNA MER2_type -2949 80 1 * 593 216 16 8 chr3 88720264 88720388 -138804190 - MER2 DNA MER2_type -214 131 7 1067 157 39 25 chr3 88720819 88721023 -138803555 - AluJo SINE Alu -4 308 102 1282 210 4 12 chr3 88722310 88722562 -138802016 - AluJo SINE Alu -7 305 56 889 232 0 28 chr3 88722581 88722758 -138801820 + AluJo SINE Alu 120 291 -21 207 295 38 19 chr3 88722762 88722867 -138801711 - L2 LINE L2 -1210 2104 1998 355 100 17 17 chr3 88726402 88726462 -138798116 - Tigger1 DNA MER2_type -1167 1251 1192 * 4237 195 42 5 chr3 88726460 88727308 -138797270 - Tigger1 DNA MER2_type -1537 881 2 661 194 108 5 chr3 88727321 88727507 -138797071 - L1MCa LINE L1 -3950 2476 2272 1140 164 63 89 chr3 88727509 88727778 -138796800 - AluJo SINE Alu -5 307 46 6704 200 58 44 chr3 88727802 88728042 -138796536 - L1MCa LINE L1 -4175 2251 2016 2125 114 7 13 chr3 88728042 88728349 -138796229 + AluY SINE Alu 1 305 -6 207 0 0 0 chr3 88728349 88728372 -138796206 + (TA)n Simple_repeat Simple_repeat 2 24 0 6704 200 58 44 chr3 88728372 88728433 -138796145 - L1MCa LINE L1 -4410 2016 1957 2287 106 3 13 chr3 88728433 88728744 -138795834 + AluY SINE Alu 1 308 -3 6704 200 58 44 chr3 88728744 88728799 -138795779 - L1MCa LINE L1 -4469 1957 1904 2191 114 0 7 chr3 88728799 88729107 -138795471 + AluSg1 SINE Alu 1 306 -3 6704 200 58 44 chr3 88729107 88729367 -138795211 - L1MCa LINE L1 -4522 1904 1649 2255 115 0 3 chr3 88729367 88729671 -138794907 - AluY SINE Alu -8 303 1 6704 200 58 44 chr3 88729671 88730425 -138794153 - L1MCa LINE L1 -4777 1649 907 1200 247 93 32 chr3 88730425 88730769 -138793809 - MLT1A1 LTR MaLR 0 365 1 6704 200 58 44 chr3 88730769 88731409 -138793169 - L1MCa LINE L1 -5519 907 277 965 117 0 8 chr3 88731409 88731537 -138793041 - FLAM_C SINE Alu -6 127 1 6704 200 58 44 chr3 88731537 88731581 -138792997 - L1MCa LINE L1 -6149 277 235 1951 128 6 67 chr3 88731581 88731773 -138792805 - AluSq SINE Alu -4 309 144 1896 160 3 7 chr3 88731773 88732073 -138792505 - AluSx SINE Alu -13 299 1 1951 128 6 67 chr3 88732073 88732209 -138792369 - AluSq SINE Alu -169 144 1 6704 200 58 44 chr3 88732209 88732274 -138792304 - L1MCa LINE L1 -6191 235 2 225 284 32 21 chr3 88732284 88732379 -138792199 - L1M4 LINE L1 -2246 3900 3805 508 283 123 45 chr3 88732447 88732804 -138791774 + L2 LINE L2 2144 2528 -786 695 214 96 6 chr3 88733103 88733280 -138791298 - MER2 DNA MER2_type 0 345 153 1647 141 21 102 chr3 88733280 88733530 -138791048 + MER4A LTR ERV1 1 211 -453 2323 112 3 0 chr3 88733530 88733834 -138790744 - AluSp SINE Alu -8 305 1 1647 141 21 102 chr3 88733834 88733967 -138790611 + MER4A LTR ERV1 211 353 -311 453 118 21 65 chr3 88733994 88734087 -138790491 + MER4A LTR ERV1 265 353 -311 469 101 11 67 chr3 88734114 88734203 -138790375 + MER4A LTR ERV1 265 348 -316 464 108 21 65 chr3 88734235 88734328 -138790250 + MER4A LTR ERV1 265 353 -311 1971 144 72 33 chr3 88734340 88734701 -138789877 - THE1C LTR MaLR 0 375 1 520 163 191 21 chr3 88734759 88734900 -138789678 + MER4C LTR ERV1 300 464 -1 533 229 9 0 chr3 88734928 88735037 -138789541 - Tigger3(Golem) DNA MER2_type 0 3029 2920 3842 136 95 30 chr3 88735150 88736164 -138788414 - MER11A LTR ERVK 0 1266 3 347 253 0 13 chr3 88736182 88736257 -138788321 - Tigger3(Golem) DNA MER2_type -2955 74 1 * 668 197 47 8 chr3 88736257 88736383 -138788195 - MER2 DNA MER2_type -214 131 1 1055 160 0 0 chr3 88736671 88736827 -138787751 - AluJb SINE Alu -156 156 1 2371 120 73 9 chr3 88737288 88737629 -138786949 + THE1B LTR MaLR 1 363 -1 1060 202 67 57 chr3 88738294 88738625 -138785953 + Charlie1a DNA MER1_type 51 384 -1071 1439 169 110 18 chr3 88738653 88738787 -138785791 + AluJb SINE Alu 5 125 -187 7103 112 22 10 chr3 88738787 88739782 -138784796 - LTR13 LTR ERVK 0 1007 1 1439 169 110 18 chr3 88739782 88739919 -138784659 + AluJb SINE Alu 125 301 -11 2096 206 98 36 chr3 88739919 88740344 -138784234 + Charlie1a DNA MER1_type 568 966 -1795 2170 91 39 0 chr3 88740344 88740630 -138783948 - AluSx SINE Alu -10 302 6 2096 206 98 36 chr3 88740630 88740901 -138783677 + Charlie1a DNA MER1_type 966 1318 -1443 2113 93 0 47 chr3 88740901 88741201 -138783377 - AluSc SINE Alu -22 287 2 2096 206 98 36 chr3 88741201 88741272 -138783306 + Charlie1a DNA MER1_type 1318 1383 -72 21 0 0 0 chr3 88741561 88741582 -138782996 + AT_rich Low_complexity Low_complexity 1 21 0 1916 128 4 4 chr3 88741587 88741868 -138782710 + AluSx SINE Alu 1 281 -31 186 43 0 0 chr3 88741871 88741894 -138782684 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 27 92 0 0 chr3 88742039 88742115 -138782463 + AT_rich Low_complexity Low_complexity 1 76 0 773 181 0 23 chr3 88742334 88742467 -138782111 - FLAM_C SINE Alu -2 131 2 3678 143 48 9 chr3 88742517 88743167 -138781411 - L1PA16 LINE L1 0 6166 5492 302 0 0 26 chr3 88743169 88743208 -138781370 + (TTA)n Simple_repeat Simple_repeat 2 39 0 2083 118 0 7 chr3 88743208 88743495 -138781083 - AluSq SINE Alu -28 285 1 1648 183 35 3 chr3 88743868 88744158 -138780420 - AluJb SINE Alu -13 299 1 2008 141 21 9 chr3 88744277 88744610 -138779968 + MER1B DNA MER1_type 1 337 0 970 240 103 114 chr3 88744911 88745269 -138779309 + LTR16C LTR ERVL 103 490 -1 273 292 22 0 chr3 88745694 88745783 -138778795 + MARNA DNA Mariner 276 366 -220 333 248 38 63 chr3 88746617 88746928 -138777650 + MER31-int LTR ERV1 134 484 -4387 1789 113 3 46 chr3 88746929 88747212 -138777366 + AluSc SINE Alu 39 309 0 714 143 74 101 chr3 88747236 88747425 -138777153 + LTR57-int LTR ERVL 310 493 -4850 * 3636 178 96 70 chr3 88747358 88748525 -138776053 + MER31-int LTR ERV1 882 2078 -2793 6982 72 55 9 chr3 88748537 88749500 -138775078 + LTR13 LTR ERVK 1 1007 0 437 151 46 59 chr3 88749583 88749719 -138774859 + MER31-int LTR ERV1 1584 2060 -5756 1109 189 47 130 chr3 88749831 88750444 -138774134 + MER31-int LTR ERV1 1699 2435 -4323 1922 220 120 37 chr3 88750709 88750970 -138773608 + MER31-int LTR ERV1 4338 4576 -1755 888 202 202 33 chr3 88750970 88751213 -138773365 - AluSc SINE Alu -14 285 2 1922 220 120 37 chr3 88751213 88751650 -138772928 + MER31-int LTR ERV1 4576 5094 -1237 348 244 0 39 chr3 88751668 88751746 -138772832 + MER31-int LTR ERV1 3886 3960 -976 1604 230 77 56 chr3 88751820 88752286 -138772292 + MER31-int LTR ERV1 3605 4080 -791 302 118 0 20 chr3 88802286 88802337 -138722241 - L1P LINE L1 -2597 3549 3500 7604 162 13 2 chr3 88802337 88803548 -138721030 + L1PA11 LINE L1 3956 5198 -976 213 39 0 0 chr3 88803548 88803574 -138721004 + (CA)n Simple_repeat Simple_repeat 1 26 0 7604 162 13 2 chr3 88803574 88804562 -138720016 + L1PA11 LINE L1 5198 6174 0 198 295 151 36 chr3 88806237 88806376 -138718202 - MIR SINE MIR -5 257 103 27 49 0 0 chr3 88806712 88806753 -138717825 + AT_rich Low_complexity Low_complexity 1 41 0 242 279 0 0 chr3 88807622 88807690 -138716888 - MIR SINE MIR -98 164 97 2303 40 7 0 chr3 88807797 88808072 -138716506 - AluY SINE Alu -9 302 26 23 78 0 0 chr3 88808348 88808399 -138716179 + AT_rich Low_complexity Low_complexity 1 51 0 21 57 0 0 chr3 88808742 88808777 -138715801 + AT_rich Low_complexity Low_complexity 1 35 0 252 171 92 40 chr3 88809327 88809403 -138715175 + MIR SINE MIR 172 251 -11 1168 143 11 0 chr3 88809536 88809725 -138714853 + L1PB4 LINE L1 5616 5806 -350 2066 130 77 15 chr3 88809725 88810064 -138714514 - THE1B LTR MaLR 0 364 5 11551 100 1 1 chr3 88810073 88811647 -138712931 - THE1B-int LTR MaLR -6 1574 1 1995 134 79 15 chr3 88811647 88811989 -138712589 - THE1B LTR MaLR 0 364 1 1544 194 44 6 chr3 88811990 88812330 -138712248 + L1PB4 LINE L1 5803 6155 -1 445 254 94 39 chr3 88813827 88814008 -138710570 + MIR SINE MIR 72 262 0 26 0 0 0 chr3 88814627 88814653 -138709925 + AT_rich Low_complexity Low_complexity 1 26 0 882 227 169 83 chr3 88816868 88817400 -138707178 + MLT1G LTR MaLR 1 588 -2 396 302 71 0 chr3 88817457 88817605 -138706973 - MIR SINE MIR -58 204 45 21 0 0 0 chr3 88822329 88822350 -138702228 + AT_rich Low_complexity Low_complexity 1 21 0 230 282 0 0 chr3 88822902 88822973 -138701605 + L1M2 LINE L1 2314 2384 -4465 430 289 197 0 chr3 88823793 88823945 -138700633 + LTR16A LTR ERVL 269 450 0 468 309 114 81 chr3 88824131 88825044 -138699534 - L2 LINE L2 -38 3275 2330 211 200 67 0 chr3 88825135 88825180 -138699398 - MIR3 SINE MIR -48 160 113 29 70 0 0 chr3 88825249 88825306 -138699272 + AT_rich Low_complexity Low_complexity 1 57 0 2054 111 3 3 chr3 88826907 88827196 -138697382 - AluSp SINE Alu -20 293 5 306 0 0 0 chr3 88827263 88827297 -138697281 + (CA)n Simple_repeat Simple_repeat 2 35 0 268 157 26 43 chr3 88827299 88827414 -138697164 + (TA)n Simple_repeat Simple_repeat 1 113 0 301 317 102 36 chr3 88828398 88828565 -138696013 + MIR SINE MIR 14 191 -71 227 263 336 36 chr3 88828698 88828835 -138695743 - MER5A DNA MER1_type 0 189 12 317 324 26 17 chr3 88829397 88829569 -138695009 - MIR SINE MIR 0 262 91 1149 198 32 131 chr3 88829607 88830012 -138694566 - MLT1A1 LTR MaLR 0 365 1 25 31 0 0 chr3 88831546 88831578 -138693000 + AT_rich Low_complexity Low_complexity 1 32 0 340 333 39 16 chr3 88831579 88831708 -138692870 + L2 LINE L2 3141 3272 0 236 281 65 126 chr3 88833118 88833349 -138691229 + MIR SINE MIR 21 237 -25 303 28 0 0 chr3 88834957 88834993 -138689585 + (TG)n Simple_repeat Simple_repeat 2 37 0 187 337 84 11 chr3 88835494 88835589 -138688989 - MIR SINE MIR -56 206 105 354 335 93 50 chr3 88837109 88837410 -138687168 - LTR16C LTR ERVL -175 316 3 41 72 0 0 chr3 88838004 88838087 -138686491 + AT_rich Low_complexity Low_complexity 1 83 0 346 269 135 14 chr3 88838455 88838596 -138685982 + MIR SINE MIR 73 230 -32 202 286 105 76 chr3 88838634 88838693 -138685885 + MIR SINE MIR 60 116 -146 2615 29 3 0 chr3 88838693 88839000 -138685578 - AluY SINE Alu -3 308 1 202 286 105 76 chr3 88839000 88839111 -138685467 + MIR SINE MIR 116 235 -27 1942 233 28 14 chr3 88840058 88840556 -138684022 - MLT1D LTR MaLR 0 505 1 228 280 28 28 chr3 88844013 88844156 -138680422 + (CATATA)n Simple_repeat Simple_repeat 2 144 0 23043 107 6 3 chr3 88844169 88848463 -138676115 - L1PA8 LINE L1 -7 6165 1863 320 296 26 58 chr3 88849521 88849710 -138674868 + L1M4 LINE L1 5124 5306 -840 28 29 0 0 chr3 88849814 88849849 -138674729 + AT_rich Low_complexity Low_complexity 1 35 0 25 65 0 0 chr3 88851172 88851218 -138673360 + AT_rich Low_complexity Low_complexity 1 46 0 1406 237 84 40 chr3 88851304 88851739 -138672839 + MLT1D LTR MaLR 49 498 -7 213 94 0 0 chr3 88851812 88851844 -138672734 + (T)n Simple_repeat Simple_repeat 1 32 0 1638 169 11 0 chr3 88852037 88852316 -138672262 + AluJb SINE Alu 1 282 -30 866 104 7 14 chr3 88853168 88853312 -138671266 - L1PA13 LINE L1 -4 6159 6017 2396 52 7 7 chr3 88854903 88855210 -138669368 - AluY SINE Alu -4 307 1 369 0 0 0 chr3 88855788 88855829 -138668749 + (TG)n Simple_repeat Simple_repeat 1 41 0 189 0 0 0 chr3 88855907 88855928 -138668650 + (TG)n Simple_repeat Simple_repeat 1 21 0 378 0 0 0 chr3 88856099 88856141 -138668437 + (TG)n Simple_repeat Simple_repeat 2 43 0 694 373 60 32 chr3 88856363 88856628 -138667950 + L2 LINE L2 349 605 -2709 2330 92 0 0 chr3 88856628 88856921 -138667657 - AluSx SINE Alu -19 293 1 694 373 60 32 chr3 88856921 88857368 -138667210 + L2 LINE L2 605 1081 -2233 304 372 210 18 chr3 88857384 88858066 -138666512 + L2 LINE L2 2082 2894 -420 1986 168 0 0 chr3 88858274 88858578 -138666000 - AluSx SINE Alu -8 304 1 21 36 0 0 chr3 88858579 88858607 -138665971 + AT_rich Low_complexity Low_complexity 1 28 0 259 381 21 0 chr3 88858757 88858854 -138665724 + L2 LINE L2 3138 3236 -36 191 401 14 14 chr3 88859384 88859531 -138665047 - MER5A DNA MER1_type -35 154 8 32 0 0 0 chr3 88859820 88859852 -138664726 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 88861268 88861289 -138663289 + AT_rich Low_complexity Low_complexity 1 21 0 432 119 24 36 chr3 88861968 88862052 -138662526 - AluS SINE Alu -212 100 18 1432 179 31 4 chr3 88862174 88862431 -138662147 + AluJo SINE Alu 11 274 -38 21 0 0 0 chr3 88862477 88862498 -138662080 + AT_rich Low_complexity Low_complexity 1 21 0 342 381 20 36 chr3 88862748 88862997 -138661581 + MIR SINE MIR 12 256 -6 297 315 63 9 chr3 88863038 88863149 -138661429 + MIR3 SINE MIR 85 201 -7 310 328 78 59 chr3 88863565 88863821 -138660757 - L1ME3A LINE L1 -284 5886 5626 297 0 0 0 chr3 88864768 88864801 -138659777 + (TA)n Simple_repeat Simple_repeat 2 34 0 229 211 18 0 chr3 88864816 88864873 -138659705 + (TG)n Simple_repeat Simple_repeat 1 58 0 31 68 0 0 chr3 88866713 88866772 -138657806 + AT_rich Low_complexity Low_complexity 1 59 0 1276 220 4 15 chr3 88867896 88868035 -138656543 - AluJo SINE Alu -56 256 120 231 36 0 0 chr3 88868035 88868063 -138656515 + (CATTT)n Simple_repeat Simple_repeat 3 30 0 1276 220 4 15 chr3 88868063 88868182 -138656396 - AluJo SINE Alu -192 120 1 1887 142 4 4 chr3 88870612 88870928 -138653650 - AluSx SINE Alu 0 316 1 26 50 0 0 chr3 88870949 88870989 -138653589 + AT_rich Low_complexity Low_complexity 1 40 0 361 315 130 53 chr3 88872008 88872423 -138652155 - L2 LINE L2 -8 3305 2751 436 319 151 65 chr3 88873255 88874273 -138650305 - L2 LINE L2 -2 3311 2192 539 257 37 55 chr3 88874273 88874491 -138650087 + MER58C DNA MER1_type 2 215 0 436 319 151 65 chr3 88874491 88874540 -138650038 - L2 LINE L2 -1121 2192 2149 342 281 107 0 chr3 88874964 88875085 -138649493 - L2 LINE L2 -1368 1946 1813 183 42 0 0 chr3 88876947 88876971 -138647607 + (TG)n Simple_repeat Simple_repeat 1 24 0 2929 178 29 4 chr3 88877512 88878034 -138646544 + MER6A DNA MER2_type 1 535 -70 275 154 19 0 chr3 88878081 88878133 -138646445 + L1MA1 LINE L1 6230 6282 -20 311 136 0 0 chr3 88878134 88878178 -138646400 + MER6A DNA MER2_type 562 605 0 632 243 22 68 chr3 88878219 88878441 -138646137 - MER58C DNA MER1_type -2 213 2 4545 197 94 8 chr3 88879529 88880649 -138643929 - L1MC2 LINE L1 -10 6334 5122 180 0 0 0 chr3 88882131 88882151 -138642427 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1269 39 0 0 chr3 88882542 88882696 -138641882 + L1PA5 LINE L1 6000 6153 -1 204 289 216 39 chr3 88882841 88883045 -138641533 + MIR SINE MIR 11 250 -12 412 72 29 0 chr3 88884257 88884326 -138640252 + (CA)n Simple_repeat Simple_repeat 2 72 0 25 31 0 0 chr3 88884453 88884485 -138640093 + AT_rich Low_complexity Low_complexity 1 32 0 494 296 84 9 chr3 88885348 88885561 -138639017 - L2 LINE L2 -1 3312 3084 25 90 0 0 chr3 88886326 88886393 -138638185 + AT_rich Low_complexity Low_complexity 1 67 0 28 50 0 17 chr3 88886947 88886979 -138637599 + AT_rich Low_complexity Low_complexity 1 33 -26 2933 189 36 2 chr3 88886979 88887562 -138637016 - LTR26 LTR ERV1 0 603 1 28 50 0 17 chr3 88887562 88887589 -138636989 + AT_rich Low_complexity Low_complexity 33 59 0 262 283 142 17 chr3 88887788 88887908 -138636670 + MIR SINE MIR 72 206 -56 194 332 164 34 chr3 88888317 88888525 -138636053 - MIR SINE MIR -27 235 1 410 279 26 13 chr3 88889192 88889346 -138635232 + L1M4c LINE L1 1446 1601 -4783 1419 182 7 39 chr3 88890232 88890537 -138634041 - AluJb SINE Alu 0 306 11 1210 184 38 120 chr3 88890672 88891096 -138633482 - MLT1B LTR MaLR 0 390 2 29 90 0 0 chr3 88891570 88891648 -138632930 + AT_rich Low_complexity Low_complexity 1 78 0 194 61 0 30 chr3 88891997 88892030 -138632548 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 505 161 0 0 chr3 88892039 88892120 -138632458 - HY3 scRNA scRNA -20 81 1 29 90 0 0 chr3 88892645 88892723 -138631855 + AT_rich Low_complexity Low_complexity 1 78 0 358 307 107 37 chr3 88893555 88893770 -138630808 + MIR SINE MIR 15 244 -18 202 333 0 17 chr3 88894942 88895002 -138629576 + L2 LINE L2 3232 3290 -23 1119 246 33 7 chr3 88895555 88895860 -138628718 - L1MA9 LINE L1 -76 6236 5924 997 219 30 91 chr3 88896007 88896413 -138628165 - L1MA2 LINE L1 -319 5985 5605 * 1971 201 50 1 chr3 88896411 88897162 -138627416 - L1MA9 LINE L1 -602 5710 4926 22 35 0 0 chr3 88898095 88898124 -138626454 + AT_rich Low_complexity Low_complexity 1 29 0 218 329 71 0 chr3 88898474 88898559 -138626019 + MIR SINE MIR 49 139 -123 624 253 112 0 chr3 88899694 88899864 -138624714 + MER5A DNA MER1_type 1 189 0 29 28 0 0 chr3 88902370 88902406 -138622172 + AT_rich Low_complexity Low_complexity 1 36 0 25 0 0 0 chr3 88902507 88902532 -138622046 + AT_rich Low_complexity Low_complexity 1 25 0 932 270 97 0 chr3 88903236 88903547 -138621031 + L1ME3A LINE L1 5606 5946 -224 271 352 96 10 chr3 88905212 88905411 -138619167 + MIR SINE MIR 47 262 0 536 291 141 54 chr3 88905950 88906263 -138618315 + MLT1H LTR MaLR 209 548 -1 253 211 123 35 chr3 88906417 88906531 -138618047 - L2 LINE L2 -1687 1627 1504 321 335 47 62 chr3 88908245 88908502 -138616076 + MIR SINE MIR 10 262 0 34 24 0 0 chr3 88908563 88908604 -138615974 + AT_rich Low_complexity Low_complexity 1 41 0 32 26 0 0 chr3 88908637 88908676 -138615902 + AT_rich Low_complexity Low_complexity 1 39 0 6597 93 14 11 chr3 88908676 88909647 -138614931 - L1MA1 LINE L1 0 6302 5329 24 67 0 0 chr3 88911563 88911608 -138612970 + AT_rich Low_complexity Low_complexity 1 45 0 329 308 42 33 chr3 88911756 88911876 -138612702 - MIR SINE MIR -140 122 2 607 140 0 0 chr3 88912416 88912509 -138612069 - Tigger3(Golem) DNA MER2_type -137 2892 2800 643 241 22 0 chr3 88912524 88912661 -138611917 - Tigger3(Golem) DNA MER2_type -2888 141 2 7801 221 55 24 chr3 88912662 88915903 -138608675 - L1MB3 LINE L1 -60 6123 2773 33 80 0 0 chr3 88915949 88916024 -138608554 + AT_rich Low_complexity Low_complexity 1 75 0 2133 118 3 0 chr3 88916169 88916466 -138608112 - AluSg SINE Alu -12 298 1 1557 233 46 4 chr3 88917815 88918206 -138606372 + MLT2B1 LTR ERVL 9 473 -42 189 74 0 0 chr3 88918206 88918233 -138606345 + (TATG)n Simple_repeat Simple_repeat 2 28 0 1557 233 46 4 chr3 88918233 88918278 -138606300 + MLT2B1 LTR ERVL 473 515 0 2091 139 36 22 chr3 88918313 88918672 -138605906 + THE1B LTR MaLR 1 364 0 10477 116 15 4 chr3 88918672 88920235 -138604343 + THE1B-int LTR MaLR 1 1580 0 2005 140 50 36 chr3 88920237 88920594 -138603984 + THE1B LTR MaLR 3 364 0 431 301 9 0 chr3 88921078 88921191 -138603387 - MER45 DNA AcHobo -1465 116 3 1679 153 82 20 chr3 88921371 88921724 -138602854 + THE1C LTR MaLR 1 375 0 8977 143 57 3 chr3 88921724 88923224 -138601354 + THE1C-int LTR MaLR 1 1580 0 1868 145 64 22 chr3 88923224 88923582 -138600996 + THE1C LTR MaLR 1 373 -2 2042 64 8 8 chr3 88924358 88924622 -138599956 + AluY SINE Alu 36 299 -12 2074 188 14 11 chr3 88925166 88925612 -138598966 + THE1C-int LTR MaLR 1134 1580 0 1842 145 64 22 chr3 88925612 88925970 -138598608 + THE1C LTR MaLR 1 373 -2 2343 54 3 10 chr3 88926932 88927228 -138597350 - AluY SINE Alu -16 295 2 21 36 0 0 chr3 88927729 88927757 -138596821 + AT_rich Low_complexity Low_complexity 1 28 0 182 271 0 0 chr3 88928254 88928302 -138596276 + MIR SINE MIR 94 141 -121 372 242 20 20 chr3 88928485 88928584 -138595994 + MIR SINE MIR 37 135 -127 283 125 21 0 chr3 88928814 88928862 -138595716 - L1MC1 LINE L1 -6 6327 6279 21 0 0 0 chr3 88928925 88928946 -138595632 + AT_rich Low_complexity Low_complexity 1 21 0 452 195 12 0 chr3 88929486 88929568 -138595010 - THE1A LTR MaLR -50 305 223 2050 64 8 8 chr3 88929927 88930192 -138594386 - AluY SINE Alu -11 300 36 339 65 0 0 chr3 88930950 88930996 -138593582 + (TG)n Simple_repeat Simple_repeat 1 46 0 1499 199 0 25 chr3 88930997 88931279 -138593299 - AluJb SINE Alu -34 278 4 916 223 45 25 chr3 88931506 88931748 -138592830 + MLT1B LTR MaLR 1 247 -143 1665 118 29 158 chr3 88931749 88932166 -138592412 + THE1B LTR MaLR 2 364 0 704 234 26 0 chr3 88932232 88932386 -138592192 + MLT1B LTR MaLR 310 467 0 498 321 101 5 chr3 88933025 88933243 -138591335 - MER8 DNA MER2_type 0 239 1 1512 267 129 8 chr3 88933243 88933847 -138590731 + L1MD1 LINE L1 5360 6036 -206 1611 232 21 3 chr3 88933857 88934208 -138590370 - MLT1A1 LTR MaLR -5 621 3 356 157 146 0 chr3 88934212 88934301 -138590277 + L1ME2 LINE L1 6018 6119 -45 701 244 187 51 chr3 88934317 88934632 -138589946 + MLT1A1 LTR MaLR 4 361 -4 215 347 41 0 chr3 88935762 88935860 -138588718 + MIR SINE MIR 51 152 -110 264 366 41 8 chr3 88935977 88936100 -138588478 + MIR SINE MIR 31 157 -105 197 289 0 0 chr3 88936111 88936156 -138588422 + L2 LINE L2 3210 3254 -18 22 35 0 0 chr3 88936366 88936395 -138588183 + AT_rich Low_complexity Low_complexity 1 29 0 1982 130 33 3 chr3 88937402 88937703 -138586875 + AluSx SINE Alu 3 312 0 1591 238 69 35 chr3 88938163 88938536 -138586042 - MER39 LTR ERV1 -5 702 124 2363 62 0 3 chr3 88938536 88938841 -138585737 - AluY SINE Alu -7 304 1 1591 238 69 35 chr3 88938841 88938965 -138585613 - MER39 LTR ERV1 -583 124 6 3334 139 44 8 chr3 88940434 88941022 -138583556 + LTR38B LTR ERV1 2 610 0 1627 188 3 3 chr3 88944086 88944384 -138580194 + AluJb SINE Alu 3 300 -12 322 294 77 57 chr3 88947816 88948010 -138576568 - L1MEc LINE L1 -2937 3278 3081 291 280 59 54 chr3 88948021 88948207 -138576371 - L1MEc LINE L1 -3283 2932 2746 479 332 122 8 chr3 88949481 88949949 -138574629 - L1MEc LINE L1 -3645 2570 2095 248 279 47 54 chr3 88950325 88950454 -138574124 - L1MC4 LINE L1 -1 8041 7914 12909 148 45 22 chr3 88950957 88953321 -138571257 - Tigger1 DNA MER2_type 0 2418 1 244 368 0 0 chr3 88953324 88953411 -138571167 - MIR SINE MIR -164 98 12 266 194 16 0 chr3 88954352 88954414 -138570164 + (TA)n Simple_repeat Simple_repeat 1 63 0 23 54 0 0 chr3 88954593 88954630 -138569948 + AT_rich Low_complexity Low_complexity 1 37 0 242 335 124 19 chr3 88955251 88955460 -138569118 + L2 LINE L2 2154 2384 -930 275 335 92 46 chr3 88956033 88956314 -138568264 - L2 LINE L2 -37 3276 2983 205 270 81 27 chr3 88956409 88956483 -138568095 - L2 LINE L2 -1162 2152 2075 586 176 195 6 chr3 88957157 88957316 -138567262 - MER53 DNA DNA 0 189 1 20067 61 5 1 chr3 88958805 88962201 -138562377 - L1PA6 LINE L1 -1 6153 2746 225 65 0 0 chr3 88962726 88962757 -138561821 + (CA)n Simple_repeat Simple_repeat 2 32 0 692 280 61 94 chr3 88963031 88963574 -138561004 - MLT1H LTR MaLR -13 536 12 245 294 0 35 chr3 88964631 88964716 -138559862 + L2 LINE L2 3229 3310 -3 2304 82 0 0 chr3 88965597 88965888 -138558690 - AluSx SINE Alu -21 291 1 196 323 0 81 chr3 88965888 88965945 -138558633 + MIR SINE MIR 51 98 -164 2318 88 3 0 chr3 88965945 88966242 -138558336 - AluSp SINE Alu -15 298 1 196 323 0 81 chr3 88966242 88966283 -138558295 + MIR SINE MIR 98 141 -121 2053 93 4 0 chr3 88966687 88966967 -138557611 - AluSg SINE Alu -3 307 27 289 287 11 99 chr3 88967016 88967197 -138557381 - L2 LINE L2 -5 3308 3144 341 298 26 92 chr3 88967370 88967598 -138556980 - L2 LINE L2 -469 2845 2633 263 358 73 27 chr3 88967600 88967860 -138556718 - L2 LINE L2 -1002 2312 2041 633 262 90 49 chr3 88967926 88968193 -138556385 + LTR16A LTR ERVL 173 450 0 396 59 0 0 chr3 88968203 88968254 -138556324 + (TG)n Simple_repeat Simple_repeat 2 52 0 256 330 108 44 chr3 88968619 88968822 -138555756 - L2 LINE L2 -1882 1432 1217 35 63 0 0 chr3 88969623 88969686 -138554892 + AT_rich Low_complexity Low_complexity 1 63 0 24 53 0 0 chr3 88969808 88969846 -138554732 + AT_rich Low_complexity Low_complexity 1 38 0 1994 126 3 7 chr3 88970145 88970438 -138554140 + AluSx SINE Alu 2 293 -19 291 104 0 0 chr3 88971415 88971463 -138553115 + (GA)n Simple_repeat Simple_repeat 2 49 0 3769 49 25 25 chr3 88971982 88972472 -138552106 + LTR2B LTR ERV1 1 490 0 225 0 0 0 chr3 88973059 88973084 -138551494 + (A)n Simple_repeat Simple_repeat 1 25 0 186 71 0 0 chr3 88973095 88973123 -138551455 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 369 0 0 0 chr3 88973977 88974018 -138550560 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 706 306 75 32 chr3 88974035 88974437 -138550141 - L2 LINE L2 -32 3281 2863 209 268 0 0 chr3 88975240 88975281 -138549297 + polypyrimidine Low_complexity Low_complexity 5 45 0 211 0 0 81 chr3 88975310 88975347 -138549231 + (TTTTTA)n Simple_repeat Simple_repeat 2 35 0 2449 47 3 0 chr3 88975806 88976105 -138548473 + AluY SINE Alu 1 300 -11 267 338 81 22 chr3 88977453 88977589 -138546989 - MIR SINE MIR -3 259 116 440 354 63 29 chr3 88978007 88978422 -138546156 + L1ME3A LINE L1 5523 5951 -219 1646 161 0 53 chr3 88978650 88978822 -138545756 - AluJb SINE Alu -16 296 145 189 0 0 0 chr3 88978822 88978843 -138545735 + (TA)n Simple_repeat Simple_repeat 1 21 0 1646 161 0 53 chr3 88978843 88978969 -138545609 - AluJb SINE Alu -167 145 14 1998 176 38 35 chr3 88979455 88980004 -138544574 + MLT2A2 LTR ERVL 1 554 0 807 209 42 5 chr3 88982425 88982616 -138541962 - L1MD2 LINE L1 -1 6358 6161 21 82 0 0 chr3 88983558 88983607 -138540971 + AT_rich Low_complexity Low_complexity 1 49 0 511 187 0 0 chr3 88983995 88984086 -138540492 + L1PA16 LINE L1 5905 5995 -171 2484 86 43 6 chr3 88984394 88984745 -138539833 - THE1B LTR MaLR 0 364 1 1629 208 31 14 chr3 88984820 88985180 -138539398 - L1PB4 LINE L1 -39 6117 5752 1328 86 0 0 chr3 88985188 88985362 -138539216 - AluSc SINE Alu -2 307 134 1147 194 153 31 chr3 88985454 88985748 -138538830 - MER2 DNA MER2_type -15 330 1 1845 94 0 8 chr3 88987546 88987811 -138536767 - L1PA7 LINE L1 0 6154 5892 512 124 9 38 chr3 88988090 88988195 -138536383 - L1PA5 LINE L1 0 6154 6053 339 65 0 0 chr3 88988751 88988797 -138535781 + (TG)n Simple_repeat Simple_repeat 1 46 0 1530 195 0 25 chr3 88988798 88989080 -138535498 - AluJb SINE Alu -34 278 4 909 224 46 25 chr3 88989307 88989548 -138535030 + MLT1B LTR MaLR 1 246 -144 1699 110 29 158 chr3 88989550 88989967 -138534611 + THE1B LTR MaLR 2 364 0 704 234 26 0 chr3 88990033 88990187 -138534391 + MLT1B LTR MaLR 310 467 0 498 321 101 5 chr3 88990825 88991043 -138533535 - MER8 DNA MER2_type 0 239 1 1526 265 129 8 chr3 88991043 88991647 -138532931 + L1MD1 LINE L1 5360 6036 -206 1611 232 21 3 chr3 88991657 88992008 -138532570 - MLT1A1 LTR MaLR -5 621 3 356 157 146 0 chr3 88992012 88992101 -138532477 + L1ME2 LINE L1 6018 6119 -45 701 244 187 51 chr3 88992117 88992432 -138532146 + MLT1A1 LTR MaLR 4 361 -4 215 347 41 0 chr3 88993562 88993660 -138530918 + MIR SINE MIR 51 152 -110 264 366 41 8 chr3 88993777 88993900 -138530678 + MIR SINE MIR 31 157 -105 197 289 0 0 chr3 88993911 88993956 -138530622 + L2 LINE L2 3210 3254 -18 22 35 0 0 chr3 88994166 88994195 -138530383 + AT_rich Low_complexity Low_complexity 1 29 0 1984 133 33 3 chr3 88995202 88995503 -138529075 + AluSx SINE Alu 3 312 0 1591 232 73 35 chr3 88995957 88996333 -138528245 - MER39 LTR ERV1 0 707 124 2407 62 0 3 chr3 88996333 88996638 -138527940 - AluY SINE Alu -7 304 1 1591 232 73 35 chr3 88996638 88996762 -138527816 - MER39 LTR ERV1 -583 124 6 3373 138 44 8 chr3 88998231 88998819 -138525759 + LTR38B LTR ERV1 2 610 0 225 176 0 0 chr3 89000087 89000121 -138524457 + Alu SINE Alu 1 34 -274 320 294 77 57 chr3 89001112 89001306 -138523272 + L1M4 LINE L1 3012 3209 -2937 1657 188 3 3 chr3 89004736 89005034 -138519544 - AluJb SINE Alu -12 300 3 225 176 0 0 chr3 89006974 89007008 -138517570 - Alu SINE Alu -274 34 1 3373 138 44 8 chr3 89008276 89008864 -138515714 - LTR38B LTR ERV1 0 610 2 1591 232 73 35 chr3 89010333 89010457 -138514121 + MER39 LTR ERV1 6 124 -583 2407 62 0 3 chr3 89010457 89010762 -138513816 + AluY SINE Alu 1 304 -7 1591 232 73 35 chr3 89010762 89011138 -138513440 + MER39 LTR ERV1 124 707 0 1984 133 33 3 chr3 89011592 89011893 -138512685 - AluSx SINE Alu 0 312 3 22 35 0 0 chr3 89012900 89012929 -138511649 + AT_rich Low_complexity Low_complexity 1 29 0 196 289 0 0 chr3 89013139 89013184 -138511394 - L2 LINE L2 -18 3254 3210 253 366 41 8 chr3 89013195 89013318 -138511260 - MIR SINE MIR -105 157 31 212 347 41 0 chr3 89013435 89013533 -138511045 - MIR SINE MIR -110 152 51 702 238 182 53 chr3 89014665 89014967 -138509611 - MLT1A1 LTR MaLR -6 359 19 351 146 146 0 chr3 89014994 89015083 -138509495 - L1ME2 LINE L1 -45 6119 6018 1604 232 21 4 chr3 89015087 89015438 -138509140 + MLT1A1 LTR MaLR 3 588 -5 1487 265 129 8 chr3 89015448 89016052 -138508526 - L1MD1 LINE L1 -206 6036 5360 502 321 101 5 chr3 89016052 89016270 -138508308 + MER8 DNA MER2_type 1 239 0 705 234 26 0 chr3 89016908 89017062 -138507516 - MLT1B LTR MaLR 0 467 310 1721 110 29 158 chr3 89017128 89017545 -138507033 - THE1B LTR MaLR 0 364 2 902 224 46 25 chr3 89017547 89017788 -138506790 - MLT1B LTR MaLR -144 246 1 1557 195 0 25 chr3 89018015 89018297 -138506281 + AluJb SINE Alu 4 278 -34 339 65 0 0 chr3 89018298 89018344 -138506234 + (CA)n Simple_repeat Simple_repeat 1 46 0 2070 64 8 8 chr3 89019098 89019362 -138505216 + AluY SINE Alu 36 299 -12 453 195 12 0 chr3 89019720 89019802 -138504776 + THE1A LTR MaLR 223 305 -50 21 0 0 0 chr3 89020342 89020363 -138504215 + AT_rich Low_complexity Low_complexity 1 21 0 279 125 21 0 chr3 89020426 89020474 -138504104 + L1MC1 LINE L1 6279 6327 -6 376 242 20 20 chr3 89020704 89020803 -138503775 - MIR SINE MIR -127 135 37 182 271 0 0 chr3 89020986 89021034 -138503544 - MIR SINE MIR -121 141 94 21 36 0 0 chr3 89021531 89021559 -138503019 + AT_rich Low_complexity Low_complexity 1 28 0 2521 49 3 7 chr3 89022060 89022365 -138502213 + AluY SINE Alu 2 305 -6 1888 145 64 22 chr3 89023304 89023662 -138500916 - THE1C LTR MaLR -2 373 1 9084 143 57 3 chr3 89023662 89025162 -138499416 - THE1C-int LTR MaLR 0 1580 1 1694 153 82 20 chr3 89025162 89025515 -138499063 - THE1C LTR MaLR 0 375 1 430 301 9 0 chr3 89025695 89025808 -138498770 + MER45 DNA AcHobo 3 116 -1465 2021 140 50 36 chr3 89026292 89026649 -138497929 - THE1B LTR MaLR 0 364 3 10716 118 12 3 chr3 89026651 89028217 -138496361 - THE1B-int LTR MaLR 0 1580 1 2123 137 36 22 chr3 89028217 89028576 -138496002 - THE1B LTR MaLR 0 364 1 1553 235 45 5 chr3 89028611 89028656 -138495922 - MLT2B1 LTR ERVL 0 515 473 189 74 0 0 chr3 89028656 89028683 -138495895 + (CATA)n Simple_repeat Simple_repeat 2 28 0 1553 235 45 5 chr3 89028683 89029074 -138495504 - MLT2B1 LTR ERVL -42 473 9 2165 118 3 0 chr3 89030423 89030720 -138493858 + AluSg SINE Alu 1 298 -12 33 80 0 0 chr3 89030865 89030940 -138493638 + AT_rich Low_complexity Low_complexity 1 75 0 7612 225 51 29 chr3 89030986 89033868 -138490710 + L1M3 LINE L1 2773 5727 -444 25 0 0 0 chr3 89034533 89034558 -138490020 + AT_rich Low_complexity Low_complexity 1 25 0 1915 87 0 8 chr3 89035193 89035458 -138489120 - L1PA7 LINE L1 0 6154 5892 216 0 0 0 chr3 89035682 89035706 -138488872 + (T)n Simple_repeat Simple_repeat 1 24 0 7626 28 2 0 chr3 89035738 89037119 -138487459 - L1PA4 LINE L1 0 6155 4776 1627 233 29 39 chr3 89038766 89039276 -138485302 - MLT1D LTR MaLR 0 505 1 308 287 132 31 chr3 89039685 89039814 -138484764 - LTR67 LTR ERVL -403 154 13 1715 182 3 13 chr3 89040435 89040737 -138483841 - AluJo SINE Alu -13 299 1 1455 268 33 11 chr3 89040863 89041386 -138483192 + MLT1E3 LTR MaLR 39 624 0 320 51 0 0 chr3 89041844 89041883 -138482695 + LTR56 LTR ERV1 349 387 -58 256 234 0 16 chr3 89042803 89042867 -138481711 + (TA)n Simple_repeat Simple_repeat 2 64 0 25 51 0 0 chr3 89043457 89043496 -138481082 + AT_rich Low_complexity Low_complexity 1 39 0 33 66 0 0 chr3 89043877 89043938 -138480640 + AT_rich Low_complexity Low_complexity 1 61 0 566 298 60 36 chr3 89044186 89044434 -138480144 + MIR SINE MIR 8 261 -1 786 306 94 17 chr3 89044940 89045555 -138479023 - L2 LINE L2 -1 3312 2648 * 2269 324 92 6 chr3 89045552 89046575 -138478003 + L2 LINE L2 1524 2634 -680 8230 67 5 7 chr3 89046875 89047949 -138476629 + MER11C LTR ERVK 1 1071 0 38 39 0 0 chr3 89048856 89048908 -138475670 + AT_rich Low_complexity Low_complexity 1 52 0 274 287 148 16 chr3 89049963 89050085 -138474493 + MIR SINE MIR 99 236 -26 186 43 0 0 chr3 89050109 89050132 -138474446 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 2527 39 7 0 chr3 89050372 89050680 -138473898 - AluY SINE Alu 0 311 2 344 339 72 14 chr3 89052838 89053059 -138471519 - MIR SINE MIR -6 256 23 21 0 0 0 chr3 89053675 89053696 -138470882 + AT_rich Low_complexity Low_complexity 1 21 0 2164 109 0 0 chr3 89054371 89054693 -138469885 + AluSx SINE Alu 1 322 0 219 36 0 0 chr3 89055441 89055469 -138469109 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1790 160 3 7 chr3 89055473 89055755 -138468823 - AluJo SINE Alu -31 281 1 1963 137 0 3 chr3 89056929 89057252 -138467326 - AluSx SINE Alu 0 322 1 989 149 72 42 chr3 89057882 89058088 -138466490 - L1M1 LINE L1 -691 5606 5399 2239 189 18 2 chr3 89058088 89058533 -138466045 + L1MA4 LINE L1 5841 6292 -8 989 149 72 42 chr3 89058533 89058560 -138466018 - L1M1 LINE L1 -898 5399 5374 1969 98 4 11 chr3 89058571 89058845 -138465733 - AluSx SINE Alu -11 301 30 188 67 33 0 chr3 89058925 89058955 -138465623 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 183 80 0 0 chr3 89060242 89060267 -138464311 + (TA)n Simple_repeat Simple_repeat 1 25 0 230 272 136 12 chr3 89060391 89060560 -138464018 + MIR SINE MIR 59 248 -14 21 0 0 0 chr3 89060561 89060582 -138463996 + AT_rich Low_complexity Low_complexity 1 21 0 231 36 0 0 chr3 89060922 89060950 -138463628 + (CA)n Simple_repeat Simple_repeat 2 29 0 239 333 30 20 chr3 89061317 89061416 -138463162 - L2 LINE L2 -215 3057 2958 434 287 211 19 chr3 89061692 89061957 -138462621 + L2 LINE L2 2998 3313 0 303 377 96 23 chr3 89061966 89062353 -138462225 - L2 LINE L2 -703 2611 2197 554 277 84 38 chr3 89063439 89063677 -138460901 - MIR SINE MIR -12 250 2 263 222 0 14 chr3 89064188 89064260 -138460318 + (CATATA)n Simple_repeat Simple_repeat 5 75 0 7139 192 65 12 chr3 89064572 89065149 -138459429 + L1MC1 LINE L1 3 548 -5878 2336 140 13 5 chr3 89065149 89065521 -138459057 - THE1C LTR MaLR 0 375 1 7139 192 65 12 chr3 89065521 89066967 -138457611 + L1MC1 LINE L1 548 2223 -4203 9594 236 43 14 chr3 89066982 89069266 -138455312 + L1MC1 LINE L1 2429 4644 -1969 1424 143 158 22 chr3 89069266 89069539 -138455039 + AluSx SINE Alu 1 310 -2 9594 236 43 14 chr3 89069539 89069835 -138454743 + L1MC1 LINE L1 4644 4930 -1683 234 0 0 0 chr3 89069835 89069861 -138454717 + (CGGAA)n Simple_repeat Simple_repeat 3 28 0 9594 236 43 14 chr3 89069861 89071340 -138453238 + L1MC1 LINE L1 4930 6607 -6 215 196 80 0 chr3 89072555 89072667 -138451911 + (TA)n Simple_repeat Simple_repeat 2 122 0 255 114 0 0 chr3 89073212 89073256 -138451322 + (CA)n Simple_repeat Simple_repeat 1 44 0 320 143 0 0 chr3 89073661 89073717 -138450861 - L1MA1 LINE L1 -159 6143 6088 24 32 0 0 chr3 89074494 89074525 -138450053 + AT_rich Low_complexity Low_complexity 1 31 0 351 0 0 0 chr3 89074839 89074878 -138449700 + (CA)n Simple_repeat Simple_repeat 2 40 0 557 261 0 51 chr3 89075712 89075869 -138448709 - MIR SINE MIR 0 262 114 277 273 0 18 chr3 89075936 89075991 -138448587 - L2 LINE L2 -76 3196 3143 271 298 135 10 chr3 89076831 89076935 -138447643 + L2 LINE L2 3154 3270 -2 180 111 0 0 chr3 89078859 89078886 -138445692 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 198 288 108 18 chr3 89079633 89079744 -138444834 + MIR SINE MIR 124 244 -18 412 332 62 28 chr3 89079935 89080146 -138444432 - L2 LINE L2 -6 3307 3090 367 326 120 22 chr3 89080355 89080622 -138443956 - L2 LINE L2 -839 2475 2183 1534 62 0 40 chr3 89080634 89080858 -138443720 - L1PA5 LINE L1 -2 6152 5938 295 126 3 0 chr3 89080859 89080954 -138443624 - L1PA3 LINE L1 -149 6023 5938 339 64 0 0 chr3 89080955 89081002 -138443576 - L1PA5 LINE L1 -170 5984 5938 334 85 0 0 chr3 89081003 89081050 -138443528 - L1PA5 LINE L1 -170 5984 5938 329 43 0 0 chr3 89081051 89081098 -138443480 - L1PA4 LINE L1 -171 5984 5938 329 43 0 0 chr3 89081099 89081146 -138443432 - L1PA4 LINE L1 -171 5984 5938 329 43 0 0 chr3 89081147 89081194 -138443384 - L1PA4 LINE L1 -171 5984 5938 824 174 207 30 chr3 89081213 89081483 -138443095 + MER33 DNA MER1_type 1 318 -6 359 367 81 7 chr3 89081583 89081880 -138442698 - L2 LINE L2 -1244 2070 1752 2361 58 3 0 chr3 89081914 89082207 -138442371 - AluY SINE Alu -17 294 1 268 323 129 0 chr3 89083482 89083637 -138440941 + MIR3 SINE MIR 8 182 -26 408 338 31 12 chr3 89086267 89086427 -138438151 - MIR SINE MIR -96 166 4 205 186 0 0 chr3 89087859 89087902 -138436676 + T-rich Low_complexity Low_complexity 5 47 0 29 106 0 0 chr3 89087944 89088057 -138436521 + AT_rich Low_complexity Low_complexity 1 113 0 1955 176 33 0 chr3 89088753 89089116 -138435462 - L1PB4 LINE L1 0 6156 5782 198 118 0 0 chr3 89089124 89089158 -138435420 + (TA)n Simple_repeat Simple_repeat 1 34 0 701 308 5 0 chr3 89089311 89089509 -138435069 - MIR SINE MIR -46 216 18 1628 216 21 60 chr3 89090085 89090570 -138434008 + MLT1C LTR MaLR 1 466 -1 285 75 0 0 chr3 89090886 89090926 -138433652 + (TC)n Simple_repeat Simple_repeat 2 41 0 23 0 0 0 chr3 89091810 89091833 -138432745 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr3 89092420 89092449 -138432129 + AT_rich Low_complexity Low_complexity 1 29 0 821 196 12 36 chr3 89092739 89092802 -138431776 - MSTD LTR MaLR -232 164 101 2236 181 21 5 chr3 89092802 89093221 -138431357 + MSTB LTR MaLR 1 426 0 821 196 12 36 chr3 89093221 89093325 -138431253 - MSTD LTR MaLR -295 101 1 23 0 0 0 chr3 89093499 89093522 -138431056 + AT_rich Low_complexity Low_complexity 1 23 0 430 330 49 22 chr3 89093601 89093786 -138430792 - MIR SINE MIR -56 206 17 283 130 0 0 chr3 89093927 89093973 -138430605 + MADE1 DNA Mariner 35 80 0 358 306 46 28 chr3 89094512 89094707 -138429871 + MIR SINE MIR 33 231 -31 25 0 0 0 chr3 89094744 89094769 -138429809 + AT_rich Low_complexity Low_complexity 1 25 0 441 294 138 37 chr3 89095165 89095383 -138429195 + MIR SINE MIR 23 262 0 275 200 0 0 chr3 89096804 89096849 -138427729 - L2 LINE L2 -94 3178 3134 1536 45 5 5 chr3 89097039 89097237 -138427341 + L1PA5 LINE L1 5952 6149 -5 22 35 0 0 chr3 89098542 89098571 -138426007 + AT_rich Low_complexity Low_complexity 1 29 0 242 93 0 0 chr3 89098691 89098734 -138425844 + L1PA6 LINE L1 6112 6154 0 183 80 0 0 chr3 89098928 89098953 -138425625 + (TC)n Simple_repeat Simple_repeat 1 25 0 581 31 0 52 chr3 89098954 89099050 -138425528 + (TTCC)n Simple_repeat Simple_repeat 4 94 0 2017 136 7 16 chr3 89099064 89099374 -138425204 - AluSx SINE Alu -3 309 3 24 0 0 0 chr3 89100039 89100063 -138424515 + AT_rich Low_complexity Low_complexity 1 24 0 361 329 16 77 chr3 89100941 89101187 -138423391 + MIR SINE MIR 32 262 0 207 182 0 0 chr3 89101190 89101223 -138423355 - MIR3 SINE MIR -51 157 125 314 336 157 4 chr3 89101586 89101866 -138422712 - L1M4 LINE L1 -3381 2765 2443 1214 80 0 0 chr3 89101971 89102121 -138422457 - AluY SINE Alu -161 150 1 23 0 0 0 chr3 89103904 89103927 -138420651 + AT_rich Low_complexity Low_complexity 1 23 0 4971 146 15 4 chr3 89103927 89104730 -138419848 - L1PA16 LINE L1 -9 6157 5346 2012 128 44 0 chr3 89104888 89105185 -138419393 - AluSx SINE Alu -2 310 1 24 32 0 0 chr3 89106527 89106558 -138418020 + AT_rich Low_complexity Low_complexity 1 31 0 186 43 0 0 chr3 89106669 89106692 -138417886 + (TA)n Simple_repeat Simple_repeat 1 23 0 2168 91 0 18 chr3 89106984 89107269 -138417309 - AluSx SINE Alu -28 284 5 343 272 98 56 chr3 89109062 89109400 -138415178 + L1ME2 LINE L1 5374 5725 -2083 314 299 69 0 chr3 89109432 89109576 -138415002 + L1ME2 LINE L1 5786 5939 -225 2440 198 39 51 chr3 89111106 89111671 -138412907 - MER68 LTR ERV1 0 562 5 256 309 29 65 chr3 89112020 89112159 -138412419 + MIR SINE MIR 103 236 -26 2032 170 35 46 chr3 89112490 89113045 -138411533 - MLT2A2 LTR ERVL 0 554 1 525 253 177 5 chr3 89113437 89113623 -138410955 + MLT1E1 LTR MaLR 55 272 -382 953 198 46 5 chr3 89113686 89113883 -138410695 + MLT1E1 LTR MaLR 448 652 -2 24 0 0 0 chr3 89114432 89114456 -138410122 + GC_rich Low_complexity Low_complexity 1 24 0 217 254 17 0 chr3 89114819 89114878 -138409700 - MIR SINE MIR -118 144 85 282 283 87 0 chr3 89115180 89115272 -138409306 - MIR3 SINE MIR -105 103 4 393 181 74 17 chr3 89116528 89116651 -138407927 - MLT1D LTR MaLR 0 548 409 * 2936 156 8 12 chr3 89116643 89117148 -138407430 + MER75 DNA T2_type 12 514 0 1168 241 25 74 chr3 89117151 89117558 -138407020 - MLT1D LTR MaLR -118 387 1 243 298 161 37 chr3 89119954 89120115 -138404463 - MIR SINE MIR -32 230 50 210 357 36 24 chr3 89120243 89120327 -138404251 - MIR SINE MIR -102 106 22 23 0 0 0 chr3 89120397 89120420 -138404158 + AT_rich Low_complexity Low_complexity 1 23 0 185 94 31 0 chr3 89120622 89120654 -138403924 + (TA)n Simple_repeat Simple_repeat 2 34 0 396 0 0 0 chr3 89120685 89120729 -138403849 + (TC)n Simple_repeat Simple_repeat 2 45 0 283 59 20 20 chr3 89120728 89120779 -138403799 + (TA)n Simple_repeat Simple_repeat 2 52 0 * 465 68 0 80 chr3 89120943 89121031 -138403547 + L1PA16 LINE L1 6079 6159 -7 457 273 41 0 chr3 89121408 89121529 -138403049 + L2 LINE L2 3186 3311 -2 2598 97 27 10 chr3 89121805 89122216 -138402362 + L1MA1 LINE L1 5564 5981 -321 1959 122 7 7 chr3 89122574 89122868 -138401710 - AluY SINE Alu -17 294 1 262 310 70 49 chr3 89123361 89123503 -138401075 + MIR SINE MIR 44 188 -74 300 314 64 7 chr3 89123711 89123851 -138400727 - MIR SINE MIR -15 247 100 198 103 0 0 chr3 89124116 89124145 -138400433 + (A)n Simple_repeat Simple_repeat 1 29 0 248 328 42 8 chr3 89124650 89124769 -138399809 + L1ME LINE L1 323 445 -5625 702 65 0 11 chr3 89124887 89124980 -138399598 - L1PA5 LINE L1 -261 5894 5803 1873 59 31 8 chr3 89124980 89125233 -138399345 + L1PA5 LINE L1 5895 6154 0 242 93 0 0 chr3 89125552 89125595 -138398983 - L1PA6 LINE L1 0 6154 6112 22 35 0 0 chr3 89125715 89125744 -138398834 + AT_rich Low_complexity Low_complexity 1 29 0 212 253 0 38 chr3 89126370 89126449 -138398129 + (TAGG)n Simple_repeat Simple_repeat 4 79 0 1566 46 5 0 chr3 89127158 89127355 -138397223 - L1PA5 LINE L1 -5 6149 5952 275 200 0 0 chr3 89127545 89127590 -138396988 + L2 LINE L2 3134 3178 -94 26 0 0 0 chr3 89128207 89128233 -138396345 + GC_rich Low_complexity Low_complexity 1 26 0 1062 191 14 14 chr3 89128725 89128945 -138395633 - MLT2B2 LTR ERVL -295 220 1 342 0 0 0 chr3 89130971 89131009 -138393569 + (CA)n Simple_repeat Simple_repeat 2 39 0 284 246 14 0 chr3 89131030 89131099 -138393479 - MIR SINE MIR -13 249 180 749 262 71 48 chr3 89132207 89132543 -138392035 + L2 LINE L2 2879 3222 -91 215 290 16 0 chr3 89132954 89133016 -138391562 + CT-rich Low_complexity Low_complexity 2 64 0 391 260 21 161 chr3 89133079 89133414 -138391164 - L3 LINE CR1 -135 1442 1155 189 0 0 0 chr3 89133498 89133519 -138391059 + (CAT)n Simple_repeat Simple_repeat 2 22 0 243 352 12 3 chr3 89134915 89135026 -138389552 - MIR SINE MIR -77 131 21 321 323 15 15 chr3 89135464 89135594 -138388984 - MLT1J2 LTR MaLR -245 205 76 698 261 130 41 chr3 89136709 89137100 -138387478 + L1MC5 LINE L1 7017 7442 -519 2151 114 3 16 chr3 89138173 89138489 -138386089 + AluSq SINE Alu 2 313 0 6456 146 71 26 chr3 89141141 89142387 -138382191 - HSMAR2 DNA Mariner 0 1302 2 556 241 15 0 chr3 89143702 89143835 -138380743 - FLAM_C SINE Alu -6 137 3 190 157 78 0 chr3 89144693 89144795 -138379783 + (TA)n Simple_repeat Simple_repeat 2 111 0 11632 135 34 123 chr3 89144795 89147448 -138377130 - Tigger1 DNA MER2_type -1 2417 1 208 0 0 0 chr3 89148161 89148184 -138376394 + (TTTG)n Simple_repeat Simple_repeat 2 156 0 1919 148 14 0 chr3 89148184 89148462 -138376116 - AluSx SINE Alu -28 284 3 26 30 0 0 chr3 89149480 89149513 -138375065 + AT_rich Low_complexity Low_complexity 1 33 0 182 368 0 0 chr3 89149913 89149989 -138374589 - MIR SINE MIR -110 152 77 21 0 0 0 chr3 89150537 89150558 -138374020 + AT_rich Low_complexity Low_complexity 1 21 0 27 73 0 0 chr3 89150727 89150782 -138373796 + AT_rich Low_complexity Low_complexity 1 55 0 3170 140 69 2 chr3 89150998 89151534 -138373044 - LTR26 LTR ERV1 -31 572 1 210 355 138 11 chr3 89151534 89151723 -138372855 + L2 LINE L2 1371 1583 -1731 1545 222 3 7 chr3 89151973 89152279 -138372299 - AluJo SINE Alu -7 305 1 301 333 86 38 chr3 89152321 89152507 -138372071 + L2 LINE L2 2397 2591 -723 23 0 0 0 chr3 89153122 89153145 -138371433 + GC_rich Low_complexity Low_complexity 1 23 0 34 0 0 0 chr3 89153153 89153187 -138371391 + GC_rich Low_complexity Low_complexity 1 34 0 31 0 0 0 chr3 89153266 89153297 -138371281 + GC_rich Low_complexity Low_complexity 1 31 0 1689 175 0 17 chr3 89153651 89153948 -138370630 - AluJb SINE Alu -19 293 2 354 188 25 12 chr3 89153951 89154031 -138370547 - L1PA16 LINE L1 -132 6034 5954 413 296 35 60 chr3 89154478 89154872 -138369706 + L1ME LINE L1 482 881 -5189 294 244 0 0 chr3 89155228 89155310 -138369268 + (TA)n Simple_repeat Simple_repeat 2 83 0 8408 95 2 7 chr3 89155363 89157386 -138367192 - L1PA8 LINE L1 0 6172 4159 22 0 0 0 chr3 89158696 89158718 -138365860 + AT_rich Low_complexity Low_complexity 1 22 0 347 331 54 34 chr3 89158818 89158966 -138365612 - MIR SINE MIR -64 198 48 2127 118 13 0 chr3 89160684 89160988 -138363590 + AluSp SINE Alu 1 308 -5 316 333 0 54 chr3 89161165 89161294 -138363284 - L2 LINE L2 -2 3270 3149 290 366 48 33 chr3 89161338 89161669 -138362909 + L2 LINE L2 2336 2671 -643 268 314 0 14 chr3 89161907 89161977 -138362601 + L2 LINE L2 3148 3216 -56 854 321 98 26 chr3 89162379 89163225 -138361353 + L2 LINE L2 2274 3184 -129 21 71 0 0 chr3 89163330 89163372 -138361206 + AT_rich Low_complexity Low_complexity 1 42 0 1696 307 22 7 chr3 89164915 89165452 -138359126 - MLT1H1 LTR MaLR 0 555 11 237 108 0 0 chr3 89165542 89165579 -138358999 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 235 211 13 66 chr3 89165581 89165657 -138358921 - L2 LINE L2 -1 3312 3241 276 280 51 34 chr3 89165726 89165844 -138358734 - MIR SINE MIR -64 198 79 23 0 0 0 chr3 89165845 89165868 -138358710 + AT_rich Low_complexity Low_complexity 1 23 0 1474 232 129 27 chr3 89166080 89166528 -138358050 - MLT1H LTR MaLR -2 547 54 2409 187 58 30 chr3 89166528 89166564 -138358014 - MLT2B3 LTR ERVL 0 554 520 477 0 0 0 chr3 89166564 89166617 -138357961 + (TAGA)n Simple_repeat Simple_repeat 2 54 0 2409 187 58 30 chr3 89166617 89167119 -138357459 - MLT2B3 LTR ERVL -34 520 1 223 179 30 0 chr3 89167217 89167284 -138357294 + (TA)n Simple_repeat Simple_repeat 2 70 0 203 219 68 68 chr3 89167779 89167852 -138356726 - L2 LINE L2 -952 2362 2290 1833 176 3 0 chr3 89167958 89168254 -138356324 - AluJb SINE Alu -15 297 1 698 335 116 52 chr3 89168561 89169289 -138355289 + L2 LINE L2 1558 2465 -849 1545 222 3 7 chr3 89169289 89169595 -138354983 - AluJo SINE Alu -7 305 1 698 335 116 52 chr3 89169595 89170017 -138354561 + L2 LINE L2 2465 2858 -456 1700 169 56 90 chr3 89170176 89170656 -138353922 + MLT1C LTR MaLR 2 465 -2 201 345 87 44 chr3 89170888 89171163 -138353415 - L2 LINE L2 -1269 2045 1759 357 309 127 5 chr3 89171766 89171986 -138352592 - MIR SINE MIR -14 248 2 319 346 123 6 chr3 89173412 89173591 -138350987 - L3b LINE CR1 -14 1569 1370 23 0 0 0 chr3 89174416 89174439 -138350139 + AT_rich Low_complexity Low_complexity 1 23 0 551 334 153 41 chr3 89174439 89174546 -138350032 + L2 LINE L2 1349 1443 -1871 423 0 0 0 chr3 89174546 89174593 -138349985 + (CA)n Simple_repeat Simple_repeat 1 47 0 551 334 153 41 chr3 89174593 89175481 -138349097 + L2 LINE L2 1443 2455 -859 328 325 19 1 chr3 89175941 89176058 -138348520 - MIR SINE MIR -62 146 38 386 113 0 14 chr3 89176337 89176408 -138348170 + (TA)n Simple_repeat Simple_repeat 1 70 0 2272 92 0 0 chr3 89176646 89176939 -138347639 - AluSc SINE Alu -16 293 1 241 330 80 0 chr3 89177170 89177282 -138347296 - MIR SINE MIR -56 206 86 228 367 25 8 chr3 89178272 89178392 -138346186 - MIR SINE MIR -8 254 133 258 349 95 0 chr3 89179679 89179805 -138344773 - MIR SINE MIR -76 186 49 803 179 7 7 chr3 89180032 89180183 -138344395 + MER4D LTR ERV1 1 151 -752 338 170 0 0 chr3 89180178 89180231 -138344347 + MER4B LTR ERV1 96 148 -462 * 310 204 0 0 chr3 89180230 89180284 -138344294 + MER4B LTR ERV1 95 148 -462 * 4281 169 26 27 chr3 89180283 89181094 -138343484 + MER4D LTR ERV1 94 903 0 848 254 113 32 chr3 89181265 89181576 -138343002 + MLT1E2 LTR MaLR 263 598 -28 1754 222 27 2 chr3 89181578 89182025 -138342553 + MER89 LTR ERV1 1 558 -1 1354 208 120 74 chr3 89182025 89182550 -138342028 - MER34C LTR ERV1 0 585 37 198 0 0 0 chr3 89183911 89183933 -138340645 + (A)n Simple_repeat Simple_repeat 1 22 0 472 318 108 14 chr3 89185174 89185397 -138339181 + LTR33 LTR ERVL 23 266 -255 540 279 34 29 chr3 89185888 89186096 -138338482 + LTR33 LTR ERVL 313 521 0 185 306 0 16 chr3 89187185 89187247 -138337331 + MIR SINE MIR 167 227 -35 382 312 63 5 chr3 89187662 89187851 -138336727 + LTR33 LTR ERVL 301 500 -21 296 320 57 17 chr3 89188699 89188874 -138335704 + MIR SINE MIR 50 231 -31 21 0 0 0 chr3 89189257 89189278 -138335300 + AT_rich Low_complexity Low_complexity 1 21 0 278 314 98 0 chr3 89189580 89189682 -138334896 - L2 LINE L2 -1 3271 3160 2371 140 57 5 chr3 89189856 89190263 -138334315 + MSTA LTR MaLR 1 428 0 1264 196 26 16 chr3 89190603 89190991 -138333587 + LTR47B LTR ERVL 1 443 0 824 203 29 41 chr3 89191184 89191426 -138333152 + LTR37A LTR ERV1 176 414 -12 22 35 0 0 chr3 89194163 89194192 -138330386 + AT_rich Low_complexity Low_complexity 1 29 0 212 340 73 27 chr3 89194201 89194351 -138330227 - L2 LINE L2 0 3272 3116 28 0 0 0 chr3 89194459 89194487 -138330091 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr3 89194865 89194886 -138329692 + (TC)n Simple_repeat Simple_repeat 1 21 0 250 176 44 29 chr3 89195882 89195950 -138328628 - MLT2B1 LTR ERVL 0 520 452 921 166 0 0 chr3 89195981 89196126 -138328452 - MLT2B2 LTR ERVL -370 145 1 911 151 25 0 chr3 89196127 89196286 -138328292 - ERVL-B2 LTR ERVL -9 5755 5593 288 174 0 58 chr3 89196287 89196356 -138328222 + MSTD LTR MaLR 2 66 -362 25426 42 1 3 chr3 89196356 89202361 -138322217 + L1PA4 LINE L1 159 6155 0 801 222 66 33 chr3 89202376 89202678 -138321900 + MSTD LTR MaLR 45 396 0 2067 172 44 12 chr3 89202679 89203298 -138321280 - ERVL-B2 LTR ERVL -168 5596 4801 289 196 0 0 chr3 89203294 89203345 -138321233 - ERVL-B2 LTR ERVL -913 4851 4801 * 304 206 1 0 chr3 89203341 89203439 -138321139 - ERVL-B2 LTR ERVL -913 4851 4762 273 216 0 0 chr3 89203435 89203486 -138321092 - ERVL-B2 LTR ERVL -913 4851 4801 * 3811 184 16 9 chr3 89203482 89204167 -138320411 - ERVL-B2 LTR ERVL -913 4851 4162 1600 142 12 83 chr3 89204168 89204493 -138320085 - MER50 LTR ERV1 0 734 433 1382 119 9 23 chr3 89204494 89204712 -138319866 - MER50 LTR ERV1 -503 231 17 2751 228 19 25 chr3 89204723 89204781 -138319797 - ERVL-B3 LTR ERVL -4654 1110 1053 1977 143 0 0 chr3 89204781 89205075 -138319503 - AluSx SINE Alu -18 294 1 2751 228 19 25 chr3 89205075 89206009 -138318569 - ERVL-B3 LTR ERVL -4711 1053 172 403 220 22 0 chr3 89206090 89206181 -138318397 + MLT2B2 LTR ERVL 423 515 0 1653 280 33 7 chr3 89206253 89206681 -138317897 - MLT2B3 LTR ERVL -110 444 6 1706 185 7 3 chr3 89207453 89207740 -138316838 + AluJb SINE Alu 1 288 -24 198 0 0 0 chr3 89207746 89207768 -138316810 + (TAAAA)n Simple_repeat Simple_repeat 4 25 0 213 143 0 24 chr3 89208372 89208414 -138316164 + (TG)n Simple_repeat Simple_repeat 2 42 0 193 333 0 21 chr3 89208477 89208570 -138316008 + MIR3 SINE MIR 106 196 -12 804 192 0 71 chr3 89210878 89211060 -138313518 + FRAM SINE Alu 1 161 -15 1722 253 35 7 chr3 89212734 89213188 -138311390 + MLT1C LTR MaLR 1 467 0 344 294 138 36 chr3 89214734 89215009 -138309569 + L2 LINE L2 1221 1523 -1791 1951 142 3 7 chr3 89215161 89215464 -138309114 - AluSq SINE Alu -11 302 1 4538 138 35 8 chr3 89215832 89216427 -138308151 - L1PA15 LINE L1 -3 6162 5540 515 125 0 0 chr3 89216427 89216507 -138308071 + MADE1 DNA Mariner 1 80 0 4538 138 35 8 chr3 89216507 89216678 -138307900 - L1PA15 LINE L1 -625 5540 5375 1303 234 62 12 chr3 89216758 89217096 -138307482 + MLT1C-int LTR MaLR 1015 1369 -2 272 296 26 9 chr3 89217111 89217226 -138307352 + MLT1C LTR MaLR 11 127 -340 761 246 109 12 chr3 89217312 89217560 -138307018 + MLT1C LTR MaLR 196 467 0 23 20 0 61 chr3 89218163 89218212 -138306366 + AT_rich Low_complexity Low_complexity 1 46 0 211 333 87 0 chr3 89219625 89219694 -138304884 - L2 LINE L2 -12 3260 3186 23 0 0 0 chr3 89219752 89219775 -138304803 + AT_rich Low_complexity Low_complexity 1 23 0 1392 181 43 40 chr3 89220195 89220520 -138304058 - THE1C LTR MaLR 0 375 50 364 235 0 0 chr3 89220518 89220599 -138303979 - THE1C LTR MaLR -245 130 50 * 403 235 0 0 chr3 89220597 89220678 -138303900 - THE1C LTR MaLR -245 130 50 375 247 0 0 chr3 89220676 89220757 -138303821 - THE1C LTR MaLR -245 130 50 * 707 189 0 15 chr3 89220755 89220887 -138303691 - THE1C LTR MaLR -245 130 1 239 308 39 26 chr3 89220898 89220976 -138303602 - L2 LINE L2 -620 2694 2616 516 281 134 6 chr3 89220990 89221154 -138303424 + MER5A DNA MER1_type 5 189 0 241 183 14 14 chr3 89221370 89221441 -138303137 + (TA)n Simple_repeat Simple_repeat 1 71 0 1819 80 8 0 chr3 89222155 89222405 -138302173 - L1PA7 LINE L1 -3 6151 5900 194 162 27 0 chr3 89222860 89222897 -138301681 + L3 LINE CR1 1526 1563 -14 519 264 8 8 chr3 89223387 89223508 -138301070 - L2 LINE L2 -3 3310 3190 626 260 62 84 chr3 89224259 89224617 -138299961 + LTR16A1 LTR ERVL 69 418 -39 1522 177 7 18 chr3 89224624 89224907 -138299671 + AluJb SINE Alu 1 280 -32 181 0 69 0 chr3 89224911 89224940 -138299638 + (CAA)n Simple_repeat Simple_repeat 1 31 0 573 274 106 14 chr3 89226034 89226242 -138298336 - MIR SINE MIR 0 262 36 422 359 60 8 chr3 89226340 89226605 -138297973 + MLT1J LTR MaLR 179 457 -54 183 371 126 17 chr3 89226663 89226838 -138297740 + MIR3 SINE MIR 4 197 -11 238 384 0 16 chr3 89227281 89227406 -138297172 + L2 LINE L2 3191 3313 0 22 0 0 0 chr3 89227548 89227570 -138297008 + AT_rich Low_complexity Low_complexity 1 22 0 536 378 27 30 chr3 89229135 89229503 -138295075 + L2 LINE L2 2421 2787 -527 182 419 19 0 chr3 89229636 89229741 -138294837 + L2 LINE L2 2941 3047 -225 7706 20 5 0 chr3 89229741 89230675 -138293903 + L1PA2 LINE L1 5218 6155 0 654 296 50 53 chr3 89231188 89231549 -138293029 - MER110 LTR ERV1 -36 455 96 379 270 44 29 chr3 89231909 89232046 -138292532 + MER103 DNA DNA 21 159 -7 349 269 144 30 chr3 89232585 89232752 -138291826 + MIR SINE MIR 61 246 -16 298 330 170 7 chr3 89233856 89234144 -138290434 - L2 LINE L2 -1 3312 2978 263 188 0 0 chr3 89234518 89234566 -138290012 - MLT2C1 LTR ERVL 0 414 367 258 237 0 0 chr3 89234685 89234761 -138289817 + (CATATA)n Simple_repeat Simple_repeat 1 76 0 315 0 0 0 chr3 89234779 89234814 -138289764 + (CA)n Simple_repeat Simple_repeat 2 36 0 1569 191 44 9 chr3 89234837 89235152 -138289426 - MLT2C1 LTR ERVL -57 340 15 1467 220 11 3 chr3 89235288 89235593 -138288985 - AluJo SINE Alu 0 307 1 1030 204 50 60 chr3 89236654 89236756 -138287822 + L1MD2 LINE L1 6044 6145 -214 189 0 0 0 chr3 89236756 89236777 -138287801 + (GA)n Simple_repeat Simple_repeat 2 22 0 1030 204 50 60 chr3 89236777 89236992 -138287586 + L1MD2 LINE L1 6145 6358 -1 268 337 181 21 chr3 89236993 89237281 -138287297 - L2 LINE L2 -800 2514 2181 1413 201 0 39 chr3 89238037 89238320 -138286258 + AluJo SINE Alu 1 272 -40 486 0 0 0 chr3 89238320 89238374 -138286204 + (TC)n Simple_repeat Simple_repeat 1 54 0 231 36 0 0 chr3 89238373 89238401 -138286177 + (CA)n Simple_repeat Simple_repeat 1 28 0 * 1572 176 4 18 chr3 89238445 89238717 -138285861 + AluJb SINE Alu 1 268 -44 1882 189 50 13 chr3 89238730 89239111 -138285467 - MSTA LTR MaLR 0 428 34 255 184 0 0 chr3 89239168 89239229 -138285349 - MSTA LTR MaLR -365 62 1 251 0 0 56 chr3 89241158 89241194 -138283384 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1501 282 39 20 chr3 89241489 89241996 -138282582 + LTR40a LTR ERVL 3 519 0 197 350 52 16 chr3 89242332 89242526 -138282052 - L2 LINE L2 -1239 2075 1875 459 224 51 19 chr3 89242628 89242893 -138281685 - LTR37A LTR ERV1 0 468 51 315 0 0 0 chr3 89243189 89243224 -138281354 + (TG)n Simple_repeat Simple_repeat 2 36 0 26 101 0 0 chr3 89243597 89243686 -138280892 + AT_rich Low_complexity Low_complexity 1 89 0 328 259 138 96 chr3 89244752 89244991 -138279587 - MER102b DNA MER1_type -9 332 84 1452 204 28 11 chr3 89245258 89245543 -138279035 - AluJo SINE Alu -22 290 1 4181 78 0 0 chr3 89245716 89246267 -138278311 + L1PA8 LINE L1 5619 6169 -3 195 409 73 0 chr3 89246624 89246788 -138277790 - MIR3 SINE MIR -1 207 32 352 303 120 7 chr3 89247642 89247784 -138276794 - MIR SINE MIR -62 200 43 960 162 12 6 chr3 89248086 89248259 -138276319 - L1 LINE L1 -2203 3943 3770 268 311 0 11 chr3 89248381 89248471 -138276107 + MER58 DNA MER1_type 177 265 -2155 182 216 27 0 chr3 89248669 89248706 -138275872 - MIR SINE MIR -133 129 92 232 326 52 57 chr3 89249873 89250066 -138274512 + MIR SINE MIR 71 262 0 934 209 0 36 chr3 89250083 89250279 -138274299 + AluJo SINE Alu 83 271 -41 282 35 0 0 chr3 89250288 89250324 -138274254 + (GGGGA)n Simple_repeat Simple_repeat 1 36 0 1026 228 99 54 chr3 89250365 89250738 -138273840 - MLT1B LTR MaLR 0 390 1 1879 136 0 0 chr3 89251046 89251341 -138273237 + L1MA3 LINE L1 6011 6305 0 222 372 77 33 chr3 89251901 89252175 -138272403 + L3b LINE CR1 1277 1562 -21 237 342 84 32 chr3 89252812 89252967 -138271611 + MIR3 SINE MIR 21 183 -25 2135 109 0 0 chr3 89254403 89254686 -138269892 + AluSg SINE Alu 1 283 -27 604 90 66 0 chr3 89254701 89254868 -138269710 + (TA)n Simple_repeat Simple_repeat 2 179 0 619 82 59 6 chr3 89254887 89255057 -138269521 + (TA)n Simple_repeat Simple_repeat 2 180 0 42 0 0 0 chr3 89255057 89255099 -138269479 + AT_rich Low_complexity Low_complexity 1 42 0 301 167 45 0 chr3 89255099 89255165 -138269413 - L1MC4 LINE L1 -1338 6704 6636 921 207 165 83 chr3 89255387 89255432 -138269146 - MSTD LTR MaLR -2 394 354 2166 92 7 149 chr3 89255432 89255869 -138268709 - THE1C LTR MaLR 0 375 1 921 207 165 83 chr3 89255869 89256186 -138268392 - MSTD LTR MaLR -42 354 2 690 11 23 0 chr3 89256294 89256381 -138268197 + L1PA4 LINE L1 6067 6155 0 2258 94 3 3 chr3 89256577 89256876 -138267702 + AluSg SINE Alu 1 299 -11 214 281 202 9 chr3 89257499 89257613 -138266965 + MIR3 SINE MIR 66 201 -7 280 164 0 36 chr3 89258299 89258354 -138266224 + MER3 DNA MER1_type 38 90 -119 * 712 223 109 5 chr3 89258317 89258501 -138266077 - MER3 DNA MER1_type -6 203 1 3851 126 24 13 chr3 89258875 89259512 -138265066 - Tigger4(Zombi) DNA MER2_type -34 2697 2054 22 0 0 0 chr3 89259806 89259828 -138264750 + AT_rich Low_complexity Low_complexity 1 22 0 181 278 19 0 chr3 89260620 89260674 -138263904 + L3 LINE CR1 827 881 -696 189 156 31 16 chr3 89261104 89261168 -138263410 + (TA)n Simple_repeat Simple_repeat 1 65 0 203 73 122 0 chr3 89261757 89261798 -138262780 + (CATAA)n Simple_repeat Simple_repeat 5 50 0 1083 242 55 36 chr3 89262263 89262593 -138261985 + MLT1A2 LTR MaLR 4 339 -35 434 341 12 0 chr3 89262926 89263090 -138261488 + L1ME LINE L1 5506 5671 -450 248 235 12 62 chr3 89263914 89263995 -138260583 + L2 LINE L2 3232 3308 -5 188 33 0 33 chr3 89264990 89265020 -138259558 + (TTTTA)n Simple_repeat Simple_repeat 1 29 0 25 51 0 0 chr3 89265022 89265061 -138259517 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr3 89265102 89265131 -138259447 + AT_rich Low_complexity Low_complexity 1 29 0 243 161 0 0 chr3 89265133 89265189 -138259389 + (TA)n Simple_repeat Simple_repeat 1 56 0 22 0 0 0 chr3 89267150 89267172 -138257406 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr3 89267494 89267528 -138257050 + AT_rich Low_complexity Low_complexity 1 34 0 271 382 39 0 chr3 89267992 89268094 -138256484 - L2 LINE L2 -16 3256 3151 661 304 97 24 chr3 89268870 89269159 -138255419 + MLT1I LTR MaLR 98 407 -2 2275 114 0 13 chr3 89269304 89269620 -138254958 - AluSx SINE Alu 0 312 1 686 230 173 18 chr3 89269668 89269894 -138254684 + MIR SINE MIR 2 262 0 22 0 0 0 chr3 89270045 89270067 -138254511 + AT_rich Low_complexity Low_complexity 1 22 0 10355 209 23 25 chr3 89270503 89274170 -138250408 - L1PA15 LINE L1 -1 6164 2509 22 35 0 0 chr3 89274747 89274776 -138249802 + AT_rich Low_complexity Low_complexity 1 29 0 1575 210 52 20 chr3 89275918 89276421 -138248157 - MER52A LTR ERV1 -681 597 25 24 32 0 0 chr3 89277218 89277249 -138247329 + AT_rich Low_complexity Low_complexity 1 31 0 254 342 26 0 chr3 89277770 89277846 -138246732 + MIR SINE MIR 69 146 -62 831 236 125 30 chr3 89278004 89278413 -138246165 + MLT1C LTR MaLR 5 467 0 185 200 0 0 chr3 89279215 89279245 -138245333 - MIR SINE MIR -61 147 118 227 269 0 0 chr3 89279265 89279317 -138245261 + MIR SINE MIR 97 148 -60 198 0 0 0 chr3 89279727 89279749 -138244829 + (A)n Simple_repeat Simple_repeat 1 22 0 204 213 0 21 chr3 89280275 89280322 -138244256 + GA-rich Low_complexity Low_complexity 6 51 0 607 259 54 6 chr3 89280624 89280790 -138243788 - MIR SINE MIR -33 229 56 1229 305 83 58 chr3 89281026 89282000 -138242578 - L2 LINE L2 -3 3310 2316 910 283 38 2 chr3 89282009 89282279 -138242299 - MLT1E2 LTR MaLR -8 618 302 186 167 0 0 chr3 89282629 89282665 -138241913 + (TA)n Simple_repeat Simple_repeat 1 36 0 27 81 0 0 chr3 89282697 89282759 -138241819 + AT_rich Low_complexity Low_complexity 1 62 0 290 351 62 77 chr3 89283115 89283374 -138241204 + L3 LINE CR1 1089 1343 -234 655 300 143 47 chr3 89283699 89284106 -138240472 + MLT1J LTR MaLR 1 446 -65 1638 198 74 0 chr3 89284537 89284861 -138239717 + MER7A DNA MER2_type 1 346 0 32 0 0 0 chr3 89284973 89285005 -138239573 + AT_rich Low_complexity Low_complexity 1 32 0 699 29 38 19 chr3 89286727 89286832 -138237746 + (TTTC)n Simple_repeat Simple_repeat 2 108 0 1739 166 10 7 chr3 89287143 89287438 -138237140 + AluJo SINE Alu 17 312 0 2035 138 0 0 chr3 89287499 89287790 -138236788 + AluSg SINE Alu 1 291 -19 267 109 15 0 chr3 89287831 89287886 -138236692 + Alu SINE Alu 256 299 -1 897 226 5 32 chr3 89287920 89288141 -138236437 - MER20 DNA MER1_type 0 219 5 230 306 139 19 chr3 89288701 89288809 -138235769 + L2 LINE L2 3193 3313 0 369 335 110 39 chr3 89288820 89289332 -138235246 + L2 LINE L2 2524 3083 -189 199 349 238 0 chr3 89289732 89289904 -138234674 + MIR SINE MIR 50 262 0 350 176 122 171 chr3 89289981 89290117 -138234461 + MIR SINE MIR 7 129 -133 2266 113 0 0 chr3 89290117 89290426 -138234152 + AluSg SINE Alu 1 309 -1 350 176 122 171 chr3 89290426 89290511 -138234067 + MIR SINE MIR 129 217 -45 1806 148 11 4 chr3 89291860 89292137 -138232441 - AluJb SINE Alu -28 284 6 2746 134 7 12 chr3 89296496 89296928 -138227650 + Tigger2a DNA MER2_type 2 431 -3 4385 120 54 31 chr3 89297850 89298909 -138225669 - MER11A LTR ERVK 0 1071 1 202 333 107 19 chr3 89299080 89299239 -138225339 + L2 LINE L2 3140 3312 -1 21 0 0 0 chr3 89300109 89300130 -138224448 + AT_rich Low_complexity Low_complexity 1 21 0 209 256 0 0 chr3 89300469 89300512 -138224066 + (CA)n Simple_repeat Simple_repeat 2 44 0 201 156 0 0 chr3 89303027 89303059 -138221519 - L2 LINE L2 0 3272 3241 1938 75 68 0 chr3 89303256 89303545 -138221033 + AluSc SINE Alu 1 307 0 407 68 17 0 chr3 89304185 89304244 -138220334 + (TA)n Simple_repeat Simple_repeat 1 60 0 22 0 0 0 chr3 89304648 89304670 -138219908 + AT_rich Low_complexity Low_complexity 1 22 0 239 308 48 18 chr3 89304942 89305112 -138219466 + MIR SINE MIR 44 252 -10 342 0 0 0 chr3 89305159 89305197 -138219381 + (CA)n Simple_repeat Simple_repeat 2 39 0 285 246 14 0 chr3 89305218 89305287 -138219291 - MIR SINE MIR -13 249 180 2104 60 4 0 chr3 89306881 89307148 -138217430 + AluY SINE Alu 37 304 -7 23 0 0 0 chr3 89307472 89307495 -138217083 + AT_rich Low_complexity Low_complexity 1 23 0 308 237 39 45 chr3 89308431 89308587 -138215991 + (CATATA)n Simple_repeat Simple_repeat 3 157 0 207 0 0 0 chr3 89308624 89308647 -138215931 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2524 30 0 0 chr3 89308647 89308947 -138215631 - L1PA3 LINE L1 -8 6147 5848 228 36 0 0 chr3 89308947 89308975 -138215603 + L1P1 LINE L1 5773 5800 -355 397 279 21 7 chr3 89309048 89309188 -138215390 - L1ME LINE L1 -439 5682 5541 28 0 0 0 chr3 89309289 89309317 -138215261 + AT_rich Low_complexity Low_complexity 1 28 0 235 357 45 27 chr3 89310108 89310220 -138214358 + L3 LINE CR1 1352 1465 -112 740 72 0 0 chr3 89310503 89310600 -138213978 + AluY SINE Alu 39 135 -176 2386 53 3 0 chr3 89310601 89310901 -138213677 + AluY SINE Alu 3 303 -8 298 42 42 0 chr3 89310904 89310952 -138213626 + (TA)n Simple_repeat Simple_repeat 2 51 0 1913 139 3 0 chr3 89311234 89311535 -138213043 - AluSx SINE Alu -7 305 4 2064 110 21 3 chr3 89313711 89314001 -138210577 - AluSx SINE Alu -14 298 4 852 257 11 6 chr3 89314921 89315104 -138209474 - MER5A DNA MER1_type 0 189 6 532 310 39 21 chr3 89315132 89315345 -138209233 + MIR SINE MIR 39 253 -9 1007 54 0 1 chr3 89315715 89315836 -138208742 - L1PA5 LINE L1 -343 5812 5691 2649 54 3 0 chr3 89315836 89316169 -138208409 + L1PA5 LINE L1 5815 6148 -6 1007 54 0 1 chr3 89316169 89316193 -138208385 - L1P4 LINE L1 -464 5691 5668 355 323 21 48 chr3 89316222 89316408 -138208170 + L2 LINE L2 3133 3313 0 704 183 24 0 chr3 89317057 89317183 -138207395 - FLAM_C SINE Alu -10 133 5 2299 88 10 3 chr3 89317194 89317502 -138207076 - AluSx SINE Alu -2 310 1 21 57 0 0 chr3 89317509 89317544 -138207034 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 89317557 89317580 -138206998 + AT_rich Low_complexity Low_complexity 1 23 0 2518 31 3 0 chr3 89317603 89317896 -138206682 - AluY SINE Alu -17 294 1 468 303 160 27 chr3 89318054 89318466 -138206112 - MLT1J LTR MaLR -42 469 3 1177 224 15 26 chr3 89320428 89320700 -138203878 + AluJo SINE Alu 14 282 -30 65 61 0 0 chr3 89320700 89320814 -138203764 + AT_rich Low_complexity Low_complexity 1 114 0 596 250 65 0 chr3 89323364 89323532 -138201046 + MER58C DNA MER1_type 22 200 -15 530 336 37 9 chr3 89323567 89323784 -138200794 - MLT1J2 LTR MaLR -198 252 30 574 291 47 0 chr3 89324063 89324235 -138200343 - HERVL40 LTR ERVL -5350 180 1 1705 233 58 32 chr3 89324238 89324701 -138199877 - LTR40a LTR ERVL -2 517 43 578 77 0 0 chr3 89325553 89325631 -138198947 - MADE1 DNA Mariner -2 78 1 243 88 0 0 chr3 89327446 89327480 -138197098 + (T)n Simple_repeat Simple_repeat 1 34 0 692 57 0 0 chr3 89328270 89328358 -138196220 - AluY SINE Alu -14 297 210 563 344 52 17 chr3 89331347 89331577 -138193001 - MIR SINE MIR -2 260 23 1247 208 11 26 chr3 89331632 89331896 -138192682 - LTR40b LTR ERVL 0 462 203 596 201 90 100 chr3 89382492 89382655 -138141923 - MER93b LTR ERV1 0 373 210 1974 107 15 0 chr3 89382655 89382925 -138141653 + AluSc SINE Alu 1 274 -35 294 29 0 0 chr3 89382926 89382961 -138141617 + (TC)n Simple_repeat Simple_repeat 2 36 0 596 201 90 100 chr3 89382961 89383074 -138141504 - MER93b LTR ERV1 -162 211 98 321 26 0 0 chr3 89383769 89383807 -138140771 + (CA)n Simple_repeat Simple_repeat 1 38 0 29 47 0 0 chr3 89384958 89385001 -138139577 + AT_rich Low_complexity Low_complexity 1 43 0 218 108 62 0 chr3 89385005 89385070 -138139508 + (TA)n Simple_repeat Simple_repeat 2 70 0 246 267 147 0 chr3 89385458 89385533 -138139045 - MIR SINE MIR -55 153 68 1423 153 32 29 chr3 89385715 89386070 -138138508 - L1MA9 LINE L1 -105 6229 5876 703 229 112 5 chr3 89386226 89386449 -138138129 - Charlie4 DNA MER1_type -1695 266 20 754 183 8 0 chr3 89388659 89388790 -138135788 - FLAM_C SINE Alu -11 132 1 24 0 0 0 chr3 89389593 89389617 -138134961 + AT_rich Low_complexity Low_complexity 1 24 0 2065 125 3 0 chr3 89389920 89390215 -138134363 + AluSp SINE Alu 1 296 -17 21 36 0 0 chr3 89391359 89391387 -138133191 + AT_rich Low_complexity Low_complexity 1 28 0 26 64 0 0 chr3 89391400 89391447 -138133131 + AT_rich Low_complexity Low_complexity 1 47 0 267 114 0 0 chr3 89391789 89391833 -138132745 + (TA)n Simple_repeat Simple_repeat 1 44 0 825 169 0 150 chr3 89392417 89392683 -138131895 + L1MB5 LINE L1 5614 5839 -335 2069 213 74 4 chr3 89392683 89393180 -138131398 - MER34 LTR ERV1 0 542 11 1793 191 3 0 chr3 89393189 89393525 -138131053 + L1MB5 LINE L1 5838 6174 0 2429 47 3 0 chr3 89394310 89394609 -138129969 + AluY SINE Alu 1 300 -11 2495 121 5 0 chr3 89396536 89396909 -138127669 - THE1C LTR MaLR 0 375 1 1605 181 10 39 chr3 89396987 89397296 -138127282 - AluJb SINE Alu -12 300 1 26 30 0 0 chr3 89397330 89397363 -138127215 + AT_rich Low_complexity Low_complexity 1 33 0 218 232 0 36 chr3 89398283 89398339 -138126239 + CT-rich Low_complexity Low_complexity 1 54 0 323 243 59 10 chr3 89399025 89399126 -138125452 - MIR3 SINE MIR -39 169 63 263 211 14 42 chr3 89399332 89399403 -138125175 + GA-rich Low_complexity Low_complexity 3 71 0 1366 236 83 6 chr3 89399774 89400113 -138124465 - MLT1A1 LTR MaLR 0 365 1 461 283 110 17 chr3 89400893 89401066 -138123512 - MER5A DNA MER1_type 0 189 1 800 97 8 22 chr3 89402619 89402753 -138121825 - L1PA16 LINE L1 0 6166 6035 3637 111 4 4 chr3 89402929 89403454 -138121124 - L1PA13 LINE L1 -63 6100 5576 312 151 0 0 chr3 89403454 89403506 -138121072 + L1PA13 LINE L1 6100 6152 -11 184 307 202 9 chr3 89403687 89403801 -138120777 - L2 LINE L2 -12 3260 3125 842 172 37 0 chr3 89404327 89404490 -138120088 - Charlie3 DNA MER1_type -6 2704 2536 257 300 177 15 chr3 89404936 89405066 -138119512 + MIR SINE MIR 80 230 -32 1758 291 135 20 chr3 89405309 89406119 -138118459 + L2 LINE L2 2122 3028 -285 1372 210 4 4 chr3 89406119 89406386 -138118192 - AluJb SINE Alu -44 268 2 1330 228 37 54 chr3 89406449 89406857 -138117721 + MLT2C2 LTR ERVL 1 401 -63 450 283 29 46 chr3 89406857 89407030 -138117548 + L2 LINE L2 3108 3277 -36 1273 196 45 16 chr3 89407170 89407482 -138117096 + L1MA8 LINE L1 5967 6287 -4 2082 109 3 23 chr3 89407575 89407877 -138116701 - AluSg SINE Alu -13 297 2 21 43 0 22 chr3 89408992 89409019 -138115559 + AT_rich Low_complexity Low_complexity 1 28 -17 1714 166 28 0 chr3 89409019 89409303 -138115275 - AluJb SINE Alu -19 293 2 21 43 0 22 chr3 89409303 89409321 -138115257 + AT_rich Low_complexity Low_complexity 28 45 0 3179 149 18 0 chr3 89410372 89410867 -138113711 - MER1A DNA MER1_type -25 504 1 23 0 0 0 chr3 89411080 89411103 -138113475 + AT_rich Low_complexity Low_complexity 1 23 0 1752 154 6 39 chr3 89412298 89412610 -138111968 - AluJo SINE Alu -9 303 2 1454 270 58 40 chr3 89412942 89413439 -138111139 - MLT1E LTR MaLR -87 506 1 1003 239 65 28 chr3 89413452 89413774 -138110804 - MLT1E3 LTR MaLR 0 624 291 686 216 211 103 chr3 89413771 89414061 -138110517 - MLT1E1 LTR MaLR -254 400 13 * 1037 80 0 7 chr3 89414308 89414446 -138110132 + AluSg/x SINE Alu 174 310 0 320 357 71 31 chr3 89414662 89414858 -138109720 + MIR3 SINE MIR 5 208 0 28 0 0 0 chr3 89414924 89414952 -138109626 + AT_rich Low_complexity Low_complexity 1 28 0 35 54 0 0 chr3 89415109 89415165 -138109413 + AT_rich Low_complexity Low_complexity 1 56 0 29 0 0 0 chr3 89415979 89416008 -138108570 + AT_rich Low_complexity Low_complexity 1 29 0 1983 105 30 30 chr3 89416285 89416580 -138107998 - AluSg SINE Alu -15 295 1 2004 105 0 71 chr3 89417144 89417468 -138107110 + AluSx SINE Alu 1 301 -11 304 312 177 20 chr3 89417743 89418076 -138106502 - L2 LINE L2 -243 3070 2678 33 43 0 0 chr3 89418165 89418212 -138106366 + AT_rich Low_complexity Low_complexity 1 47 0 255 103 0 0 chr3 89418772 89418811 -138105767 + (TG)n Simple_repeat Simple_repeat 2 40 0 234 342 25 0 chr3 89419441 89419520 -138105058 - MIR SINE MIR -111 151 71 1607 169 10 27 chr3 89419632 89419927 -138104651 - AluJb SINE Alu -22 290 1 426 263 118 86 chr3 89420965 89421337 -138103241 - MLT1J LTR MaLR 0 511 128 3962 38 0 0 chr3 89422760 89423235 -138101343 + L1PA3 LINE L1 5678 6152 -3 37 39 0 0 chr3 89424087 89424138 -138100440 + AT_rich Low_complexity Low_complexity 1 51 0 873 292 52 6 chr3 89424355 89424704 -138099874 - L1ME2 LINE L1 -47 6117 5753 * 1222 141 0 5 chr3 89424683 89424874 -138099704 - L1PA16 LINE L1 -188 5978 5789 278 254 35 29 chr3 89424868 89425041 -138099537 - L1ME2 LINE L1 -1589 4557 4384 * 723 289 150 12 chr3 89425072 89425578 -138099000 - L1ME2 LINE L1 -3325 2821 2246 22710 37 3 0 chr3 89425682 89428474 -138096104 - L1P LINE L1 -1025 5121 2322 5654 44 8 0 chr3 89428471 89429177 -138095401 + L1P LINE L1 1606 2317 -3829 * 475 248 66 8 chr3 89429885 89430006 -138094572 - MER5B DNA MER1_type -30 148 21 1869 122 38 21 chr3 89431328 89431615 -138092963 + AluSg SINE Alu 1 292 -18 21 36 0 0 chr3 89432015 89432043 -138092535 + AT_rich Low_complexity Low_complexity 1 28 0 304 247 26 0 chr3 89432043 89432120 -138092458 - MIR SINE MIR -1 261 183 221 235 20 0 chr3 89434327 89434378 -138090200 + (TGGA)n Simple_repeat Simple_repeat 2 53 0 2403 60 0 0 chr3 89434582 89434867 -138089711 + AluY SINE Alu 17 301 -10 202 404 35 23 chr3 89435087 89435258 -138089320 + L2 LINE L2 2612 2784 -530 522 317 62 26 chr3 89435370 89435597 -138088981 + MIR SINE MIR 23 257 -5 399 300 62 0 chr3 89435573 89435703 -138088875 - L2 LINE L2 -3 3310 3173 * 28 48 0 0 chr3 89435711 89435753 -138088825 + AT_rich Low_complexity Low_complexity 1 42 0 1191 203 80 46 chr3 89435834 89436184 -138088394 + MLT1A1 LTR MaLR 1 362 -3 354 232 85 12 chr3 89436655 89436737 -138087841 + L2 LINE L2 3193 3280 -33 1315 175 77 7 chr3 89436837 89437111 -138087467 + AluJo SINE Alu 20 312 0 637 39 0 0 chr3 89437244 89437321 -138087257 - L1P LINE L1 -1152 4994 4918 3599 19 0 2 chr3 89437321 89437761 -138086817 + L1PA3 LINE L1 5724 6162 0 21 0 0 0 chr3 89438150 89438171 -138086407 + AT_rich Low_complexity Low_complexity 1 21 0 223 347 157 14 chr3 89438671 89438818 -138085760 - MIR SINE MIR -75 187 20 2103 131 0 10 chr3 89439598 89439910 -138084668 - AluSx SINE Alu -3 309 1 643 264 107 41 chr3 89440273 89440680 -138083898 + L2 LINE L2 2687 3120 -193 659 258 32 26 chr3 89441151 89441341 -138083237 + L2 LINE L2 3121 3311 -2 247 204 0 37 chr3 89441389 89441443 -138083135 - L2 LINE L2 -70 3243 3192 405 102 0 0 chr3 89443659 89443718 -138080860 + (CA)n Simple_repeat Simple_repeat 2 60 0 2576 94 39 0 chr3 89443742 89444103 -138080475 + THE1C LTR MaLR 1 375 0 797 275 80 82 chr3 89444987 89445522 -138079056 + MLT1F LTR MaLR 3 536 -6 277 375 37 28 chr3 89446215 89446431 -138078147 - L2 LINE L2 -448 2866 2649 288 172 0 0 chr3 89446524 89446582 -138077996 + (CAT)n Simple_repeat Simple_repeat 2 59 0 542 307 29 37 chr3 89447491 89447732 -138076846 + MIR SINE MIR 3 241 -21 22 0 0 0 chr3 89447832 89447854 -138076724 + AT_rich Low_complexity Low_complexity 1 22 0 312 266 82 39 chr3 89448157 89448303 -138076275 - MLT1I LTR MaLR -189 220 67 303 28 0 0 chr3 89449747 89449783 -138074795 + (CA)n Simple_repeat Simple_repeat 2 37 0 388 333 76 40 chr3 89450664 89450967 -138073611 - L2 LINE L2 -4 3309 2996 474 0 32 0 chr3 89453162 89453224 -138071354 - L1PA2 LINE L1 0 6155 6092 577 290 59 0 chr3 89453871 89454040 -138070538 + MIR SINE MIR 69 247 -15 2111 116 3 3 chr3 89454069 89454372 -138070206 + AluSg SINE Alu 1 303 -7 1467 176 0 0 chr3 89454931 89455176 -138069402 - Tigger2a DNA MER2_type 0 434 190 430 217 0 52 chr3 89455185 89455300 -138069278 - Tigger2a DNA MER2_type -325 109 1 37 39 0 0 chr3 89456335 89456386 -138068192 + AT_rich Low_complexity Low_complexity 1 51 0 216 385 42 28 chr3 89456841 89457054 -138067524 + L2 LINE L2 2867 3082 -190 2826 186 6 9 chr3 89458629 89459156 -138065422 + LTR45 LTR ERV1 1 525 0 249 269 0 0 chr3 89460244 89460296 -138064282 + L2 LINE L2 3221 3272 0 352 215 74 27 chr3 89461136 89461285 -138063293 + Charlie1 DNA MER1_type 2442 2597 -164 713 272 61 83 chr3 89461497 89462015 -138062563 + MLT1H LTR MaLR 1 549 0 307 266 25 89 chr3 89462018 89462176 -138062402 - L2 LINE L2 -1 3312 3165 918 311 74 16 chr3 89465018 89465529 -138059049 - Charlie7 DNA MER1_type -2058 554 14 417 268 105 26 chr3 89465558 89465748 -138058830 + MER112 DNA MER1_type 54 258 -2 492 352 108 44 chr3 89465821 89466724 -138057854 - L2 LINE L2 -649 2665 1705 241 289 0 0 chr3 89466933 89466985 -138057593 - MLT1G1 LTR MaLR -465 130 79 1549 293 36 7 chr3 89466996 89467437 -138057141 + MLT1H1 LTR MaLR 102 555 0 31 0 0 0 chr3 89467789 89467820 -138056758 + AT_rich Low_complexity Low_complexity 1 31 0 603 335 93 29 chr3 89469263 89469576 -138055002 - L2 LINE L2 -1 3312 2980 376 296 106 0 chr3 89469720 89469862 -138054716 - L2 LINE L2 -480 2834 2678 501 215 52 76 chr3 89471211 89471383 -138053195 - L2 LINE L2 -5 3308 3141 6199 32 0 0 chr3 89471488 89472217 -138052361 + L1PA3 LINE L1 5427 6155 0 21 71 0 0 chr3 89472355 89472397 -138052181 + AT_rich Low_complexity Low_complexity 1 42 0 254 221 98 0 chr3 89472459 89472581 -138051997 + (TTTAG)n Simple_repeat Simple_repeat 2 135 0 31 44 0 0 chr3 89474399 89474444 -138050134 + AT_rich Low_complexity Low_complexity 1 45 0 376 349 0 0 chr3 89475334 89475440 -138049138 - MIR SINE MIR -33 229 124 1667 268 128 18 chr3 89476164 89476720 -138047858 - MLT1E2 LTR MaLR 0 626 10 21 36 0 0 chr3 89477099 89477127 -138047451 + AT_rich Low_complexity Low_complexity 1 28 0 198 362 53 32 chr3 89477679 89477773 -138046805 + MIR SINE MIR 28 123 -139 206 307 147 60 chr3 89480275 89480425 -138044153 - MIR3 SINE MIR -38 170 8 521 322 68 72 chr3 89480565 89481210 -138043368 + L2 LINE L2 2672 3304 -9 1301 140 13 38 chr3 89481551 89481787 -138042791 - MER30 DNA MER1_type 0 230 1 344 340 35 0 chr3 89483344 89483485 -138041093 + MIR SINE MIR 13 158 -104 272 304 183 26 chr3 89484946 89485061 -138039517 - L2 LINE L2 -1 3271 3139 2479 90 5 38 chr3 89485687 89486054 -138038524 - THE1A LTR MaLR 0 355 1 10653 93 30 15 chr3 89486054 89487610 -138036968 - THE1A-int LTR MaLR 0 1580 1 2501 96 8 6 chr3 89487610 89487964 -138036614 - THE1A LTR MaLR 0 355 1 3065 11 0 6 chr3 89488151 89488508 -138036070 + L1PA2 LINE L1 5799 6153 -2 221 0 0 33 chr3 89489891 89489921 -138034657 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 243 371 35 9 chr3 89490929 89491045 -138033533 - MIR3 SINE MIR -37 171 53 23 0 0 0 chr3 89492602 89492625 -138031953 + AT_rich Low_complexity Low_complexity 1 23 0 1008 99 0 0 chr3 89492625 89492766 -138031812 - L1MA1 LINE L1 0 6302 6162 2710 81 21 98 chr3 89492989 89493470 -138031108 - MLT2A1 LTR ERVL 0 444 1 2264 191 34 5 chr3 89493473 89493917 -138030661 + L1MA8 LINE L1 5614 6070 -221 2429 62 7 3 chr3 89494562 89494870 -138029708 - AluY SINE Alu -2 309 1 1332 233 82 44 chr3 89495438 89495888 -138028690 + MLT1C LTR MaLR 1 467 0 462 261 9 0 chr3 89496262 89496377 -138028201 - MLT1A1 LTR MaLR -51 314 199 581 301 49 40 chr3 89497649 89497875 -138026703 - MIR SINE MIR -30 232 5 201 359 72 36 chr3 89498319 89498486 -138026092 + MIR SINE MIR 48 220 -42 289 385 26 21 chr3 89499590 89499782 -138024796 + L3 LINE CR1 1297 1489 -88 507 289 106 33 chr3 89499802 89499837 -138024741 - L2 LINE L2 -4 3309 3278 15226 144 25 38 chr3 89499837 89500484 -138024094 + Tigger4(Zombi) DNA MER2_type 1 655 -2076 2040 141 3 0 chr3 89500484 89500788 -138023790 + AluSx SINE Alu 1 305 -7 15226 144 25 38 chr3 89500788 89502351 -138022227 + Tigger4(Zombi) DNA MER2_type 655 2171 -560 249 33 0 0 chr3 89502351 89502381 -138022197 + (TA)n Simple_repeat Simple_repeat 1 30 0 15226 144 25 38 chr3 89502381 89502935 -138021643 + Tigger4(Zombi) DNA MER2_type 2171 2731 0 507 289 106 33 chr3 89502935 89503172 -138021406 - L2 LINE L2 -35 3278 3017 266 304 88 16 chr3 89503166 89503291 -138021287 - L2 LINE L2 -481 2833 2700 * 276 30 0 0 chr3 89503370 89503403 -138021175 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 954 135 6 26 chr3 89503406 89503562 -138021016 - AluSg/x SINE Alu -23 289 137 318 156 0 0 chr3 89503564 89503625 -138020953 - Alu SINE Alu -252 48 2 1265 258 78 21 chr3 89503733 89504307 -138020271 - L1MC5 LINE L1 -44 7917 7311 25 0 0 0 chr3 89504552 89504577 -138020001 + AT_rich Low_complexity Low_complexity 1 25 0 231 398 10 0 chr3 89505684 89505782 -138018796 - L2 LINE L2 -15 3257 3159 273 315 34 0 chr3 89506691 89506780 -138017798 - MIR3 SINE MIR 0 208 117 618 284 35 15 chr3 89507387 89507584 -138016994 - MIR SINE MIR -13 249 49 389 303 111 12 chr3 89507642 89507804 -138016774 - MIR SINE MIR -48 214 37 21 0 0 0 chr3 89508016 89508037 -138016541 + AT_rich Low_complexity Low_complexity 1 21 0 549 118 11 0 chr3 89508353 89508446 -138016132 - L1MA1 LINE L1 0 6302 6209 439 258 32 105 chr3 89508450 89508640 -138015938 - MLT1J LTR MaLR -244 267 92 260 327 75 19 chr3 89509082 89509189 -138015389 - L2 LINE L2 -215 3057 2945 547 203 122 0 chr3 89509279 89509402 -138015176 + MER58B DNA MER1_type 167 304 -37 2330 83 0 0 chr3 89510211 89510501 -138014077 + AluSx SINE Alu 1 290 -22 316 282 39 10 chr3 89510568 89510671 -138013907 - MIR3 SINE MIR -3 205 100 225 0 0 0 chr3 89510816 89510841 -138013737 + (CAAAA)n Simple_repeat Simple_repeat 5 29 0 2065 134 10 3 chr3 89511084 89511390 -138013188 - AluSx SINE Alu -4 308 1 22 35 0 0 chr3 89512026 89512055 -138012523 + AT_rich Low_complexity Low_complexity 1 29 0 263 260 31 0 chr3 89512203 89512299 -138012279 - L1M4 LINE L1 -1052 5094 4996 2363 128 72 15 chr3 89512397 89512802 -138011776 + MSTA LTR MaLR 1 428 0 1563 250 64 34 chr3 89512946 89513418 -138011160 - MLT1F1 LTR MaLR -4 563 78 2597 85 8 3 chr3 89514832 89515184 -138009394 + THE1A LTR MaLR 1 354 -1 11067 97 15 3 chr3 89515185 89516747 -138007831 + THE1A-int LTR MaLR 1 1580 0 2610 96 6 0 chr3 89516747 89517100 -138007478 + THE1A LTR MaLR 1 355 0 259 98 0 0 chr3 89518677 89518718 -138005860 - MER103 DNA DNA -2 164 124 457 311 114 26 chr3 89519082 89519310 -138005268 - MIR SINE MIR -13 249 2 7456 35 3 0 chr3 89520163 89521624 -138002954 + L1PA3 LINE L1 4690 6152 -3 317 270 31 74 chr3 89522744 89522907 -138001671 + MLT1I LTR MaLR 252 407 -2 610 200 0 0 chr3 89523189 89523299 -138001279 + FLAM_A SINE Alu 1 110 -32 21 36 0 0 chr3 89523353 89523381 -138001197 + AT_rich Low_complexity Low_complexity 1 28 0 416 262 171 6 chr3 89524937 89525101 -137999477 + MIR SINE MIR 67 257 -5 22 0 0 0 chr3 89525656 89525678 -137998900 + AT_rich Low_complexity Low_complexity 1 22 0 226 176 0 20 chr3 89525688 89525739 -137998839 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 14953 42 0 0 chr3 89525748 89528337 -137996241 - L1PA4 LINE L1 0 6155 3567 1886 146 48 38 chr3 89529040 89529411 -137995167 + THE1C LTR MaLR 1 375 0 27 42 0 56 chr3 89529492 89529529 -137995049 + AT_rich Low_complexity Low_complexity 1 34 -33 2073 90 0 48 chr3 89529529 89529818 -137994760 + AluSg SINE Alu 4 278 -32 27 42 0 56 chr3 89529818 89529851 -137994727 + AT_rich Low_complexity Low_complexity 34 67 0 387 335 25 12 chr3 89529961 89530122 -137994456 - MER5A DNA MER1_type 0 189 27 247 266 0 0 chr3 89530294 89530358 -137994220 + (TAG)n Simple_repeat Simple_repeat 2 65 0 870 180 23 12 chr3 89530359 89530467 -137994111 - Tigger7 DNA MER2_type -1 2490 2378 2330 171 39 0 chr3 89530467 89530883 -137993695 + MSTB1 LTR MaLR 1 432 0 870 180 23 12 chr3 89530883 89530946 -137993632 - Tigger7 DNA MER2_type -113 2378 2317 1470 215 63 0 chr3 89530966 89531268 -137993310 - Tigger7 DNA MER2_type -2166 321 1 727 332 38 6 chr3 89533040 89533353 -137991225 + LTR16C LTR ERVL 116 438 -53 1644 40 0 0 chr3 89533355 89533553 -137991025 + L1PA5 LINE L1 5957 6154 0 436 324 29 8 chr3 89533683 89533917 -137990661 - MLT1E LTR MaLR -249 300 20 189 280 102 25 chr3 89534237 89534355 -137990223 + L2 LINE L2 2933 3059 -213 399 283 51 14 chr3 89534530 89534668 -137989910 + L2 LINE L2 3171 3313 0 288 0 0 0 chr3 89535361 89535393 -137989185 + (TG)n Simple_repeat Simple_repeat 1 32 0 815 11 0 0 chr3 89537504 89537599 -137986979 + L1PA2 LINE L1 6058 6152 -3 198 0 0 0 chr3 89537621 89537643 -137986935 + (TG)n Simple_repeat Simple_repeat 2 23 0 611 194 82 6 chr3 89540353 89540523 -137984055 - MER53 DNA DNA -1 188 6 316 206 10 21 chr3 89540860 89540957 -137983621 + CT-rich Low_complexity Low_complexity 4 99 0 1696 258 85 30 chr3 89540977 89541481 -137983097 + MLT1F LTR MaLR 11 542 0 30 59 0 0 chr3 89542873 89542924 -137981654 + AT_rich Low_complexity Low_complexity 1 51 0 194 324 0 56 chr3 89542995 89543066 -137981512 - L2 LINE L2 0 3272 3206 196 244 61 49 chr3 89544357 89544439 -137980139 - MIR SINE MIR -13 249 167 270 73 0 0 chr3 89544595 89544636 -137979942 + (TG)n Simple_repeat Simple_repeat 1 41 0 251 339 36 36 chr3 89544638 89544750 -137979828 + L2 LINE L2 3146 3257 -15 22 35 0 0 chr3 89545768 89545797 -137978781 + AT_rich Low_complexity Low_complexity 1 29 0 228 273 15 45 chr3 89548185 89548251 -137976327 - L2 LINE L2 -16 3256 3193 474 33 0 0 chr3 89548253 89548313 -137976265 + (CA)n Simple_repeat Simple_repeat 2 61 0 357 143 20 112 chr3 89548414 89548512 -137976066 - MER53 DNA DNA 0 189 101 297 345 149 12 chr3 89548525 89548778 -137975800 - L2 LINE L2 -191 3081 2793 305 221 32 21 chr3 89548959 89549054 -137975524 - L1MA10 LINE L1 -13 6321 6226 21 36 0 0 chr3 89650016 89650044 -137874534 + AT_rich Low_complexity Low_complexity 1 28 0 357 238 0 0 chr3 89650665 89650766 -137873812 + (TA)n Simple_repeat Simple_repeat 2 102 0 321 300 0 0 chr3 89650775 89650865 -137873713 + L1MC4 LINE L1 6614 6703 -1339 203 182 0 0 chr3 89650865 89650898 -137873680 + (TATATG)n Simple_repeat Simple_repeat 5 37 0 254 145 0 65 chr3 89650898 89650960 -137873618 + LTR66 LTR ERVL 381 438 -172 234 0 0 0 chr3 89650998 89651024 -137873554 + (CA)n Simple_repeat Simple_repeat 1 26 0 3685 246 41 70 chr3 89651422 89651782 -137872796 + L1MC4a LINE L1 6281 6650 -1158 1956 110 10 17 chr3 89651782 89652109 -137872469 + AluSq SINE Alu 1 325 0 342 80 0 0 chr3 89652113 89652163 -137872415 + (TG)n Simple_repeat Simple_repeat 1 50 0 3685 246 41 70 chr3 89652163 89653276 -137871302 + L1MC4a LINE L1 6653 7718 -90 1350 152 109 31 chr3 89653291 89653547 -137871031 - AluJo SINE Alu -30 282 7 359 165 25 13 chr3 89653571 89653650 -137870928 + L1MD3 LINE L1 7901 7980 -15 510 261 118 6 chr3 89653666 89653827 -137870751 - MIR SINE MIR -74 188 10 2335 87 3 0 chr3 89653875 89654185 -137870393 - AluSx SINE Alu -1 311 1 24 32 0 0 chr3 89654433 89654464 -137870114 + AT_rich Low_complexity Low_complexity 1 31 0 512 359 31 12 chr3 89656355 89656611 -137867967 - MIR SINE MIR 0 262 2 565 328 41 16 chr3 89657931 89658175 -137866403 + MIR SINE MIR 4 253 -9 1270 208 161 100 chr3 89658317 89659030 -137865548 - LTR50 LTR ERVL -34 761 5 24 53 0 0 chr3 89659576 89659614 -137864964 + AT_rich Low_complexity Low_complexity 1 38 0 667 279 147 20 chr3 89659912 89660306 -137864272 + L1MC4 LINE L1 7599 8042 0 28 86 0 0 chr3 89660375 89660445 -137864133 + AT_rich Low_complexity Low_complexity 1 70 0 221 294 0 0 chr3 89661668 89661753 -137862825 + A-rich Low_complexity Low_complexity 1 85 0 200 167 0 0 chr3 89661870 89661900 -137862678 + polypyrimidine Low_complexity Low_complexity 5 34 0 183 162 0 0 chr3 89662006 89662043 -137862535 + T-rich Low_complexity Low_complexity 1 37 0 536 260 74 62 chr3 89662544 89662802 -137861776 - MLT1K LTR MaLR -2 586 326 230 362 121 26 chr3 89662907 89663023 -137861555 + L2 LINE L2 3142 3268 -4 562 319 65 9 chr3 89663803 89664035 -137860543 - MIR SINE MIR -15 247 3 191 36 36 0 chr3 89664599 89664627 -137859951 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 32 26 0 0 chr3 89664911 89664950 -137859628 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr3 89665156 89665178 -137859400 + AT_rich Low_complexity Low_complexity 1 22 0 235 381 0 0 chr3 89666090 89666195 -137858383 - L2 LINE L2 -5 3267 3163 269 253 50 0 chr3 89666365 89666464 -137858114 + L1MC4 LINE L1 6602 6705 -1337 248 217 181 24 chr3 89666629 89666712 -137857866 - L1ME LINE L1 -451 5719 5624 302 295 12 0 chr3 89666728 89666834 -137857744 + L1ME LINE L1 5735 5842 -320 204 255 0 0 chr3 89667167 89667214 -137857364 + A-rich Low_complexity Low_complexity 1 47 0 * 234 167 0 0 chr3 89667179 89667215 -137857363 + polypurine Low_complexity Low_complexity 2 37 0 477 138 0 0 chr3 89667243 89667323 -137857255 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 243 0 0 0 chr3 89668150 89668177 -137856401 + (TTTTG)n Simple_repeat Simple_repeat 3 29 0 2407 57 0 22 chr3 89668677 89668995 -137855583 + AluY SINE Alu 1 311 0 771 153 0 15 chr3 89668997 89669128 -137855450 + AluJb SINE Alu 1 129 -183 234 128 0 0 chr3 89669128 89669167 -137855411 + (TA)n Simple_repeat Simple_repeat 1 39 0 337 267 0 22 chr3 89669173 89669263 -137855315 - L1MC4 LINE L1 -1339 6703 6616 317 245 0 51 chr3 89669276 89669374 -137855204 + L1MC4 LINE L1 6611 6703 -1339 236 224 15 0 chr3 89669374 89669441 -137855137 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 876 192 6 0 chr3 89669443 89669650 -137854928 + AluJb SINE Alu 125 332 0 26 74 0 0 chr3 89669655 89669709 -137854869 + AT_rich Low_complexity Low_complexity 1 54 0 349 241 40 87 chr3 89669723 89669871 -137854707 - L1ME4a LINE L1 -93 6028 5899 3468 69 2 0 chr3 89669871 89670323 -137854255 - L1PA7 LINE L1 -1 6153 5701 349 241 40 87 chr3 89670323 89670473 -137854105 - L1ME4a LINE L1 -222 5899 5744 331 297 34 47 chr3 89670574 89670722 -137853856 - L2 LINE L2 -937 2377 2232 221 0 35 0 chr3 89670754 89670783 -137853795 + (TTATA)n Simple_repeat Simple_repeat 2 31 0 242 146 73 0 chr3 89670853 89670949 -137853629 + (TA)n Simple_repeat Simple_repeat 1 103 0 776 238 58 58 chr3 89671546 89671857 -137852721 + MER5C DNA MER1_type 14 324 0 1846 52 3 83 chr3 89673022 89673346 -137851232 - AluY SINE Alu -13 298 1 606 248 52 90 chr3 89673930 89674273 -137850305 - MER46C DNA MER2_type -5 333 4 1803 149 3 32 chr3 89674583 89674891 -137849687 + AluJo SINE Alu 1 299 -13 327 173 0 0 chr3 89676648 89676700 -137847878 + AluJo SINE Alu 49 100 -202 599 279 84 28 chr3 89676840 89677055 -137847523 - MIR SINE MIR -22 240 14 204 159 0 23 chr3 89677099 89677143 -137847435 + T-rich Low_complexity Low_complexity 3 45 0 412 299 72 24 chr3 89677887 89678054 -137846524 + MIR SINE MIR 20 194 -68 657 272 34 83 chr3 89678071 89678457 -137846121 + LTR37B LTR ERV1 53 419 -49 345 394 47 28 chr3 89678571 89678825 -137845753 + L2 LINE L2 2943 3201 -71 307 299 166 19 chr3 89679468 89679625 -137844953 - MER5A DNA MER1_type -6 183 4 477 169 0 0 chr3 89679845 89679922 -137844656 - FLAM_A SINE Alu -19 123 47 21 0 0 0 chr3 89680714 89680735 -137843843 + AT_rich Low_complexity Low_complexity 1 21 0 228 67 0 0 chr3 89681433 89681463 -137843115 + (T)n Simple_repeat Simple_repeat 1 30 0 490 123 0 0 chr3 89681467 89681548 -137843030 + AluSp/q SINE Alu 232 312 -1 182 114 0 29 chr3 89681702 89681737 -137842841 + (GGAAA)n Simple_repeat Simple_repeat 5 38 0 491 267 131 21 chr3 89682781 89682972 -137841606 + MIR SINE MIR 19 230 -32 562 329 174 29 chr3 89683058 89683962 -137840616 + L2 LINE L2 1720 2754 -560 228 111 0 0 chr3 89684526 89684562 -137840016 + (A)n Simple_repeat Simple_repeat 1 36 0 21 57 0 0 chr3 89684964 89684999 -137839579 + AT_rich Low_complexity Low_complexity 1 35 0 285 145 0 0 chr3 89685057 89685119 -137839459 + (T)n Simple_repeat Simple_repeat 1 62 0 1199 172 5 5 chr3 89686179 89686382 -137838196 + AluJo SINE Alu 86 288 -24 292 287 253 0 chr3 89686665 89686839 -137837739 - L2 LINE L2 -688 2626 2409 192 182 0 0 chr3 89687748 89687792 -137836786 + A-rich Low_complexity Low_complexity 1 44 0 332 317 41 24 chr3 89687908 89688031 -137836547 + L2 LINE L2 3148 3272 0 1420 192 23 87 chr3 89689067 89689458 -137835120 + MLT1B LTR MaLR 21 386 -4 189 276 86 0 chr3 89689813 89689871 -137834707 - MIR SINE MIR -3 259 197 887 209 28 0 chr3 89690153 89690335 -137834243 - MER5A DNA MER1_type -2 187 1 338 222 0 0 chr3 89691200 89691272 -137833306 - MER33 DNA MER1_type 0 324 253 462 252 29 6 chr3 89691286 89691443 -137833135 - MER33 DNA MER1_type -264 60 1 261 229 9 76 chr3 89691928 89692033 -137832545 + L2 LINE L2 3150 3247 -66 2354 117 13 16 chr3 89692065 89692441 -137832137 - THE1C LTR MaLR 0 375 1 28 0 0 0 chr3 89693202 89693230 -137831348 + AT_rich Low_complexity Low_complexity 1 28 0 1093 169 24 0 chr3 89693796 89694009 -137830569 + L1MA9 LINE L1 6095 6312 0 1459 49 5 19 chr3 89694037 89694242 -137830336 - AluY SINE Alu -11 300 99 24 0 0 0 chr3 89694634 89694658 -137829920 + AT_rich Low_complexity Low_complexity 1 24 0 503 229 131 20 chr3 89695479 89695723 -137828855 - Charlie4a DNA MER1_type -34 474 204 1886 192 45 38 chr3 89695739 89696160 -137828418 - Tigger2a DNA MER2_type -10 424 1 390 187 246 96 chr3 89696160 89696341 -137828237 - Charlie4a DNA MER1_type -299 209 1 839 264 61 22 chr3 89697341 89697618 -137826960 - MLT1E2 LTR MaLR -1 625 338 251 283 43 54 chr3 89697645 89697737 -137826841 - L2 LINE L2 -4 3268 3178 253 273 26 0 chr3 89697820 89697897 -137826681 - L2 LINE L2 -9 3304 3226 22 35 0 0 chr3 89698601 89698630 -137825948 + AT_rich Low_complexity Low_complexity 1 29 0 1292 209 112 9 chr3 89699637 89699967 -137824611 + MLT1A1 LTR MaLR 2 365 0 23 33 0 0 chr3 89699992 89700022 -137824556 + AT_rich Low_complexity Low_complexity 1 30 0 269 316 42 11 chr3 89701210 89701305 -137823273 + MIR SINE MIR 56 153 -109 1276 204 42 31 chr3 89701759 89702410 -137822168 + L1MD2 LINE L1 4905 5561 -744 2031 187 51 79 chr3 89702512 89703079 -137821499 + L1MD2 LINE L1 5801 6351 -8 5620 110 19 0 chr3 89703513 89704753 -137819825 - L1PA13 LINE L1 -11 6152 4878 1935 167 30 33 chr3 89704822 89705187 -137819391 - THE1B LTR MaLR 0 364 1 10907 94 7 39 chr3 89705187 89706819 -137817759 - THE1B-int LTR MaLR 0 1580 2 1839 153 66 24 chr3 89706820 89707153 -137817425 - THE1B LTR MaLR 0 364 18 439 78 141 0 chr3 89707152 89707216 -137817362 - THE1B LTR MaLR -274 90 18 * 583 74 111 0 chr3 89707215 89707296 -137817282 - THE1B LTR MaLR -274 90 1 2477 70 0 3 chr3 89707486 89707788 -137816790 + AluY SINE Alu 1 301 -10 324 0 0 0 chr3 89707788 89707824 -137816754 + (TA)n Simple_repeat Simple_repeat 2 37 0 25 83 0 0 chr3 89709014 89709074 -137815504 + AT_rich Low_complexity Low_complexity 1 60 0 742 343 182 37 chr3 89709273 89710451 -137814127 + L3 LINE CR1 208 1555 -22 23 54 0 0 chr3 89711269 89711306 -137813272 + AT_rich Low_complexity Low_complexity 1 37 0 698 219 7 0 chr3 89711492 89711629 -137812949 - FAM SINE Alu -22 163 26 334 154 0 0 chr3 89711630 89711682 -137812896 - AluJo/F(R)AM SINE Alu -87 215 164 473 205 0 0 chr3 89711682 89711765 -137812813 - FRAM/FAM SINE Alu -94 82 1 251 378 37 55 chr3 89712182 89712619 -137811959 + L2 LINE L2 2430 2858 -456 1266 187 32 3 chr3 89712966 89713250 -137811328 - L1 LINE L1 -949 5197 4906 1244 132 142 50 chr3 89713248 89713529 -137811049 - L1PB2 LINE L1 -1 6150 5844 * 3891 203 69 14 chr3 89713531 89714653 -137809925 - L1 LINE L1 -1227 6338 5056 339 307 0 7 chr3 89714660 89714810 -137809768 - MER52A LTR ERV1 0 1755 1607 558 228 82 194 chr3 89714821 89715739 -137808839 - LTR28 LTR ERV1 -284 1471 1 6226 187 12 48 chr3 89715762 89716866 -137807712 - L1 LINE L1 -2549 5016 3970 2185 75 17 0 chr3 89716866 89717155 -137807423 + L1PA8 LINE L1 5868 6165 -7 6226 187 12 48 chr3 89717155 89717750 -137806828 - L1 LINE L1 -3595 3970 3355 211 384 7 20 chr3 89717966 89718112 -137806466 + L2 LINE L2 3161 3304 -9 243 0 0 0 chr3 89718918 89718945 -137805633 + (A)n Simple_repeat Simple_repeat 1 27 0 251 362 51 43 chr3 89719143 89719281 -137805297 + L2 LINE L2 3129 3267 -5 425 307 64 23 chr3 89720161 89720357 -137804221 - MIR3 SINE MIR -4 204 2 224 389 68 19 chr3 89721388 89721550 -137803028 - MIR3 SINE MIR -14 194 25 658 326 102 32 chr3 89721629 89722149 -137802429 - L2 LINE L2 0 3313 2760 245 265 12 48 chr3 89722175 89722258 -137802320 - L2 LINE L2 -1 3312 3233 2700 252 78 16 chr3 89722290 89723179 -137801399 - L2 LINE L2 -570 2744 1801 302 316 168 15 chr3 89723196 89723392 -137801186 - L2 LINE L2 -182 3131 2906 186 167 0 0 chr3 89723529 89723565 -137801013 + (TAA)n Simple_repeat Simple_repeat 3 38 0 29 0 0 0 chr3 89723692 89723721 -137800857 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 89725523 89725545 -137799033 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr3 89725554 89725595 -137798983 + AT_rich Low_complexity Low_complexity 1 41 0 241 258 0 0 chr3 89725650 89725716 -137798862 + T-rich Low_complexity Low_complexity 1 66 0 493 323 52 13 chr3 89725882 89726111 -137798467 - MIR SINE MIR -6 256 19 1324 190 45 85 chr3 89727653 89728122 -137796456 - LTR7 LTR ERV1 0 450 1 22 80 0 0 chr3 89728130 89728180 -137796398 + AT_rich Low_complexity Low_complexity 1 50 0 7433 217 29 39 chr3 89728988 89731770 -137792808 - HERVH LTR ERV1 -3524 3040 17 1307 200 49 90 chr3 89731787 89732256 -137792322 - LTR7 LTR ERV1 0 450 1 351 0 0 0 chr3 89732261 89732300 -137792278 + (CA)n Simple_repeat Simple_repeat 1 39 0 1342 166 11 26 chr3 89732694 89732965 -137791613 - L1PA16 LINE L1 0 6166 5900 3463 81 0 0 chr3 89733020 89733490 -137791088 + L1PA8 LINE L1 5703 6172 0 1970 161 0 0 chr3 89734905 89735204 -137789374 - AluSx SINE Alu -3 309 11 429 356 112 24 chr3 89736768 89737260 -137787318 + L2 LINE L2 1726 2260 -1054 914 142 113 42 chr3 89737322 89737534 -137787044 + MLT1B LTR MaLR 1 227 -163 451 297 80 17 chr3 89737627 89737802 -137786776 + MIR SINE MIR 5 190 -72 559 319 118 0 chr3 89738759 89738963 -137785615 + MIR SINE MIR 20 247 -15 564 265 154 50 chr3 89740471 89740731 -137783847 + MLT1E2 LTR MaLR 1 287 -339 545 157 0 0 chr3 89740729 89740818 -137783760 + MLT1E2 LTR MaLR 415 503 -2 * 266 234 16 16 chr3 89742329 89742393 -137782185 - L2 LINE L2 0 3313 3250 376 414 6 0 chr3 89743744 89743925 -137780653 - L3 LINE CR1 -84 1493 1312 7977 180 97 38 chr3 89744532 89746189 -137778389 + MER52A LTR ERV1 1 1755 0 1520 134 22 0 chr3 89746201 89746425 -137778153 - MER2 DNA MER2_type -114 231 3 276 358 18 9 chr3 89746972 89747081 -137777497 - L2 LINE L2 -493 2821 2712 436 322 143 15 chr3 89747178 89747569 -137777009 - L2 LINE L2 -1008 2306 1866 251 309 25 43 chr3 89748152 89748314 -137776264 + L1MC/D LINE L1 5696 5854 -1954 23 33 0 0 chr3 89748834 89748864 -137775714 + AT_rich Low_complexity Low_complexity 1 30 0 877 123 0 13 chr3 89749429 89749583 -137774995 + (GAA)n Simple_repeat Simple_repeat 2 153 0 1753 151 0 59 chr3 89749907 89750231 -137774347 + AluSx SINE Alu 1 305 -7 203 61 30 0 chr3 89750234 89750267 -137774311 + (GAAA)n Simple_repeat Simple_repeat 3 36 0 331 287 84 14 chr3 89750975 89751118 -137773460 - HAL1 LINE L1 -109 2398 2246 313 183 70 43 chr3 89751269 89751384 -137773194 - HAL1b LINE L1 -461 887 770 22 0 0 0 chr3 89751684 89751706 -137772872 + AT_rich Low_complexity Low_complexity 1 22 0 313 352 111 12 chr3 89751826 89751988 -137772590 - HAL1 LINE L1 -620 1887 1710 22 35 0 0 chr3 89752686 89752715 -137771863 + AT_rich Low_complexity Low_complexity 1 29 0 183 382 34 0 chr3 89753385 89753474 -137771104 + L3 LINE CR1 1341 1432 -145 23 0 0 0 chr3 89753923 89753946 -137770632 + AT_rich Low_complexity Low_complexity 1 23 0 180 333 0 0 chr3 89755569 89755620 -137768958 - MER5B DNA MER1_type -52 126 76 339 307 62 0 chr3 89756209 89756387 -137768191 - MIR SINE MIR -41 221 34 1281 207 63 75 chr3 89756941 89757159 -137767419 - MER77 LTR ERV1 -63 542 328 915 177 6 40 chr3 89757159 89757334 -137767244 - FAM SINE Alu -2 173 5 1281 207 63 75 chr3 89757334 89757463 -137767115 - MER77 LTR ERV1 -277 328 199 1127 196 5 0 chr3 89757505 89757699 -137766879 - MER77 LTR ERV1 -410 195 1 1044 139 55 11 chr3 89758115 89758425 -137766153 - THE1C LTR MaLR 0 375 1 209 350 20 0 chr3 89758594 89758694 -137765884 + MIR SINE MIR 148 249 -13 192 40 0 0 chr3 89758850 89758875 -137765703 + (TA)n Simple_repeat Simple_repeat 1 25 0 2782 10 0 0 chr3 89759472 89759774 -137764804 + AluY SINE Alu 1 302 -9 36 0 0 0 chr3 89760349 89760385 -137764193 + AT_rich Low_complexity Low_complexity 1 36 0 780 273 24 14 chr3 89761939 89762148 -137762430 + MIR SINE MIR 49 259 -3 26 0 0 0 chr3 89762171 89762197 -137762381 + AT_rich Low_complexity Low_complexity 1 26 0 1509 186 36 4 chr3 89762486 89762596 -137761982 + AluJo SINE Alu 12 117 -195 927 92 0 0 chr3 89762596 89762727 -137761851 + (GAAA)n Simple_repeat Simple_repeat 2 132 0 1509 186 36 4 chr3 89762727 89762890 -137761688 + AluJo SINE Alu 117 294 -18 296 352 65 28 chr3 89763003 89763219 -137761359 + L2 LINE L2 2804 3027 -245 266 281 22 34 chr3 89764238 89764327 -137760251 - MIR SINE MIR -109 153 66 252 266 155 63 chr3 89764737 89764944 -137759634 - LTR67 LTR ERVL -329 228 3 1962 109 11 7 chr3 89764962 89765246 -137759332 + AluSx SINE Alu 1 285 -27 4851 138 27 30 chr3 89765373 89766234 -137758344 - MER4D LTR ERV1 -9 863 6 445 61 0 0 chr3 89766348 89766414 -137758164 - L1MA3 LINE L1 0 6305 6240 322 358 89 43 chr3 89766438 89767353 -137757225 - L2 LINE L2 -5 3267 2307 1137 63 7 0 chr3 89767795 89767937 -137756641 + AluSp/q SINE Alu 161 303 -10 222 344 54 36 chr3 89768345 89768569 -137756009 - L2 LINE L2 -844 2470 2243 202 298 122 38 chr3 89769276 89769407 -137755171 - MIR SINE MIR -50 212 71 342 0 0 0 chr3 89770246 89770284 -137754294 + (TA)n Simple_repeat Simple_repeat 2 39 0 412 319 69 34 chr3 89771440 89771644 -137752934 + MIR SINE MIR 37 247 -15 234 0 0 0 chr3 89771752 89771778 -137752800 + (TC)n Simple_repeat Simple_repeat 1 26 0 339 148 12 25 chr3 89772208 89772289 -137752289 + CT-rich Low_complexity Low_complexity 2 81 0 26 30 0 0 chr3 89773200 89773233 -137751345 + AT_rich Low_complexity Low_complexity 1 33 0 1991 125 0 0 chr3 89773320 89773599 -137750979 + AluSx SINE Alu 15 293 -19 252 282 61 46 chr3 89774319 89774450 -137750128 + MER94 DNA DNA 1 133 -1 206 171 40 26 chr3 89776130 89776206 -137748372 + GA-rich Low_complexity Low_complexity 3 79 0 21 57 0 0 chr3 89776346 89776381 -137748197 + AT_rich Low_complexity Low_complexity 1 35 0 346 212 9 71 chr3 89777019 89777132 -137747446 + L1MC4 LINE L1 6614 6719 -1323 318 26 0 0 chr3 89777142 89777181 -137747397 + (TG)n Simple_repeat Simple_repeat 2 40 0 1889 150 0 29 chr3 89777190 89777497 -137747081 - AluJb SINE Alu -14 298 1 2308 95 0 0 chr3 89777681 89777976 -137746602 - AluSx SINE Alu -12 300 6 1004 141 48 92 chr3 89777979 89778206 -137746372 + MLT1B LTR MaLR 151 367 -23 846 227 92 0 chr3 89778379 89778586 -137745992 + MIR SINE MIR 2 227 -35 282 242 125 62 chr3 89780015 89780143 -137744435 - MIR3 SINE MIR -62 146 11 21 36 0 0 chr3 89781063 89781091 -137743487 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 89781492 89781520 -137743058 + AT_rich Low_complexity Low_complexity 1 28 0 2906 149 102 14 chr3 89781634 89782190 -137742388 - MER6A DNA MER2_type 0 605 1 3006 128 18 0 chr3 89782525 89782970 -137741608 + MLT2A2 LTR ERVL 1 453 0 1331 166 40 83 chr3 89783797 89784099 -137740479 + AluJo SINE Alu 17 305 -7 206 222 95 0 chr3 89784479 89784542 -137740036 + L2 LINE L2 514 582 -2732 2371 76 7 0 chr3 89785354 89785656 -137738922 + AluY SINE Alu 1 304 -7 1647 308 138 27 chr3 89785775 89786975 -137737603 + L2 LINE L2 1942 3275 -38 401 290 29 29 chr3 89790117 89790255 -137734323 - MIR SINE MIR -107 155 18 2331 115 0 3 chr3 89790686 89790999 -137733579 + AluSx SINE Alu 1 312 0 24 32 0 0 chr3 89791212 89791243 -137733335 + AT_rich Low_complexity Low_complexity 1 31 0 314 271 185 7 chr3 89791465 89791616 -137732962 + MER5B DNA MER1_type 1 178 0 206 244 0 13 chr3 89791651 89791729 -137732849 + CT-rich Low_complexity Low_complexity 3 79 0 203 147 0 0 chr3 89792396 89792430 -137732148 + (CA)n Simple_repeat Simple_repeat 1 34 0 1850 159 40 27 chr3 89792472 89792842 -137731736 - THE1C LTR MaLR 0 375 1 206 191 44 59 chr3 89794187 89794255 -137730323 + MER5A DNA MER1_type 47 113 -76 396 0 0 0 chr3 89794326 89794370 -137730208 + (TG)n Simple_repeat Simple_repeat 1 44 0 484 239 22 29 chr3 89795555 89795693 -137728885 + MER5A DNA MER1_type 53 189 0 549 302 72 33 chr3 89796506 89796840 -137727738 + MLT1J LTR MaLR 22 368 -143 23 0 0 0 chr3 89797147 89797170 -137727408 + AT_rich Low_complexity Low_complexity 1 23 0 28 86 0 0 chr3 89797228 89797298 -137727280 + AT_rich Low_complexity Low_complexity 1 70 0 42 20 0 0 chr3 89798173 89798222 -137726356 + AT_rich Low_complexity Low_complexity 1 49 0 212 311 16 0 chr3 89798305 89798366 -137726212 - L2 LINE L2 -56 3216 3155 203 302 79 0 chr3 89798411 89798474 -137726104 + MIR SINE MIR 16 83 -179 23 0 0 0 chr3 89799161 89799184 -137725394 + AT_rich Low_complexity Low_complexity 1 23 0 1131 175 66 62 chr3 89800570 89800827 -137723751 + AluJo SINE Alu 1 258 -54 771 244 38 24 chr3 89800911 89801202 -137723376 + Charlie2a DNA MER1_type 726 1020 -1842 222 115 19 39 chr3 89801989 89802041 -137722537 + (TA)n Simple_repeat Simple_repeat 2 52 0 451 44 88 9 chr3 89802916 89803029 -137721549 + (TA)n Simple_repeat Simple_repeat 2 123 0 23 0 0 0 chr3 89804704 89804727 -137719851 + AT_rich Low_complexity Low_complexity 1 23 0 2000 135 3 6 chr3 89805117 89805428 -137719150 - AluSx SINE Alu -1 311 2 568 279 68 16 chr3 89805677 89805867 -137718711 - MIR SINE MIR -6 256 57 523 333 57 50 chr3 89805873 89806104 -137718474 - L2 LINE L2 -241 3072 2844 497 71 12 71 chr3 89806104 89806189 -137718389 + MADE1 DNA Mariner 1 80 0 523 333 57 50 chr3 89806189 89806562 -137718016 - L2 LINE L2 -469 2844 2457 877 196 49 10 chr3 89806567 89806771 -137717807 + L1MC1 LINE L1 6121 6332 -1 2171 104 0 0 chr3 89806771 89807058 -137717520 - AluSg1 SINE Alu -22 287 1 594 332 86 19 chr3 89807098 89807423 -137717155 - L2 LINE L2 -871 2443 2097 23 92 0 0 chr3 89808246 89808311 -137716267 + AT_rich Low_complexity Low_complexity 1 65 0 639 212 0 29 chr3 89811028 89811165 -137713413 + FLAM_A SINE Alu 1 133 0 183 330 220 0 chr3 89811233 89811342 -137713236 + L2 LINE L2 3133 3265 -7 710 262 156 13 chr3 89811544 89811769 -137712809 + MIR SINE MIR 6 262 0 225 0 0 0 chr3 89812955 89812980 -137711598 + (TG)n Simple_repeat Simple_repeat 1 25 0 200 316 0 0 chr3 89813584 89813641 -137710937 - L2 LINE L2 -1 3271 3215 548 135 10 0 chr3 89813795 89813899 -137710679 - L1MA4 LINE L1 -106 6194 6090 1420 219 45 22 chr3 89814614 89814971 -137709607 + MLT1A1 LTR MaLR 1 365 0 283 326 75 20 chr3 89814998 89815145 -137709433 + L2 LINE L2 3116 3270 -2 1275 192 116 131 chr3 89815217 89815291 -137709287 + MSTD LTR MaLR 14 88 -308 670 205 8 8 chr3 89815291 89815418 -137709160 + FLAM_A SINE Alu 1 127 -6 1275 192 116 131 chr3 89815418 89815735 -137708843 + MSTD LTR MaLR 88 368 -28 310 340 89 21 chr3 89816162 89816444 -137708134 - L2 LINE L2 -2808 506 206 262 61 0 0 chr3 89817179 89817212 -137707366 - MLT2B3 LTR ERVL 0 515 483 519 214 0 24 chr3 89817252 89817498 -137707080 + (TA)n Simple_repeat Simple_repeat 1 239 0 426 207 3 33 chr3 89817518 89817854 -137706724 + (TA)n Simple_repeat Simple_repeat 1 325 0 2361 191 68 29 chr3 89817869 89818355 -137706223 - MLT2B3 LTR ERVL -49 505 1 1934 134 0 0 chr3 89819208 89819485 -137705093 + AluSx SINE Alu 35 311 -1 832 293 57 4 chr3 89819972 89820218 -137704360 - MIR SINE MIR -2 260 2 22 35 0 0 chr3 89820698 89820727 -137703851 + AT_rich Low_complexity Low_complexity 1 29 0 879 56 0 0 chr3 89820747 89820855 -137703723 - LTR17 LTR ERV1 -456 324 217 1660 180 7 17 chr3 89821714 89822014 -137702564 + AluJo SINE Alu 1 297 -15 265 224 26 0 chr3 89822054 89822130 -137702448 + MER116 DNA Mariner 1 78 -2 562 236 110 37 chr3 89822727 89822918 -137701660 + MER63A DNA MER1_type 1 205 -5 189 0 0 0 chr3 89826800 89826821 -137697757 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 201 159 0 0 chr3 89826876 89826920 -137697658 + GA-rich Low_complexity Low_complexity 1 44 0 232 286 26 0 chr3 89827070 89827147 -137697431 + GA-rich Low_complexity Low_complexity 2 80 0 3336 244 35 9 chr3 89827490 89827719 -137696859 - Tigger6a DNA MER2_type -514 1083 861 4142 74 7 0 chr3 89827719 89828272 -137696306 - L1PA7 LINE L1 0 6154 5598 3336 244 35 9 chr3 89828272 89828903 -137695675 - Tigger6a DNA MER2_type -736 861 201 25 0 0 0 chr3 89829236 89829261 -137695317 + AT_rich Low_complexity Low_complexity 1 25 0 643 236 136 10 chr3 89829315 89829514 -137695064 - MER58A DNA MER1_type 0 224 1 352 299 19 25 chr3 89829798 89829955 -137694623 - L2 LINE L2 -1305 2009 1854 23 33 0 0 chr3 89830915 89830945 -137693633 + AT_rich Low_complexity Low_complexity 1 30 0 285 176 39 39 chr3 89831359 89831461 -137693117 + (TATATG)n Simple_repeat Simple_repeat 3 104 0 210 143 0 0 chr3 89832075 89832110 -137692468 + (TA)n Simple_repeat Simple_repeat 1 35 0 283 333 89 30 chr3 89832594 89832729 -137691849 - L2 LINE L2 -221 3051 2909 389 342 87 51 chr3 89833003 89833477 -137691101 - L2 LINE L2 -529 2785 2295 342 271 27 9 chr3 89833781 89833893 -137690685 - MLT1L LTR MaLR -328 287 110 209 226 19 0 chr3 89834359 89834412 -137690166 + GA-rich Low_complexity Low_complexity 2 55 0 2211 114 0 7 chr3 89834459 89834767 -137689811 - AluSc SINE Alu -2 307 2 1066 177 132 82 chr3 89835439 89835795 -137688783 - THE1C LTR MaLR -1 374 1 198 336 14 71 chr3 89836107 89836247 -137688331 + L2 LINE L2 2952 3083 -189 2107 132 0 0 chr3 89836742 89837031 -137687547 + AluSx SINE Alu 1 289 -23 32 0 0 0 chr3 89837031 89837063 -137687515 + AT_rich Low_complexity Low_complexity 1 32 0 2236 111 0 0 chr3 89841562 89841869 -137682709 + AluSg1 SINE Alu 1 307 -2 734 188 21 7 chr3 89843706 89843850 -137680728 - AluJb SINE Alu -31 281 136 2330 84 0 3 chr3 89843952 89844249 -137680329 + AluSx SINE Alu 1 296 -16 1589 225 5 16 chr3 89844342 89844711 -137679867 + MLT1A1 LTR MaLR 1 365 0 1425 113 10 5 chr3 89846571 89846774 -137677804 - AluSq SINE Alu -109 204 1 2027 200 50 31 chr3 89846786 89847262 -137677316 - L1MB8 LINE L1 0 6178 5694 22 0 0 0 chr3 89847649 89847671 -137676907 + AT_rich Low_complexity Low_complexity 1 22 0 427 330 75 17 chr3 89848153 89848326 -137676252 + MER5A DNA MER1_type 1 183 -6 276 236 0 0 chr3 89848614 89848669 -137675909 + AluS SINE Alu 227 281 -19 189 359 0 0 chr3 89848963 89849041 -137675537 + L2 LINE L2 2271 2348 -966 1636 225 82 31 chr3 89849041 89849517 -137675061 + MLT1D LTR MaLR 2 501 -4 21 0 0 0 chr3 89849584 89849605 -137674973 + AT_rich Low_complexity Low_complexity 1 21 0 190 292 62 62 chr3 89851581 89851646 -137672932 + MIR SINE MIR 36 100 -108 240 200 150 0 chr3 89851811 89851871 -137672707 - L2 LINE L2 -1 3312 3244 2796 151 17 15 chr3 89851876 89852401 -137672177 + L1MA4A LINE L1 5768 6293 -10 225 226 38 0 chr3 89853267 89853353 -137671225 + (TCTCTG)n Simple_repeat Simple_repeat 1 89 0 2089 131 0 0 chr3 89853993 89854290 -137670288 - AluSx SINE Alu -15 297 1 234 313 11 34 chr3 89854478 89854657 -137669921 + C-rich Low_complexity Low_complexity 4 178 0 * 273 246 47 18 chr3 89854534 89854705 -137669873 + CT-rich Low_complexity Low_complexity 4 179 0 214 222 0 0 chr3 89855890 89855935 -137668643 - L2 LINE L2 0 3313 3269 402 272 146 6 chr3 89857481 89857639 -137666939 - MIR SINE MIR -11 251 72 1204 187 27 127 chr3 89857754 89858156 -137666422 - MLT1A1 LTR MaLR 0 365 4 625 250 0 0 chr3 89858264 89858392 -137666186 + MER94 DNA DNA 1 128 -6 2972 160 10 10 chr3 89858950 89859468 -137665110 + L1PA16 LINE L1 5522 6039 -127 1732 170 13 7 chr3 89859468 89859774 -137664804 + AluJb SINE Alu 1 308 -4 582 173 38 60 chr3 89859773 89859906 -137664672 + L1PA16 LINE L1 6004 6133 -33 26 64 0 0 chr3 89859906 89859953 -137664625 + AT_rich Low_complexity Low_complexity 1 47 0 2405 28 3 0 chr3 89859986 89860268 -137664310 + AluY SINE Alu 1 340 0 514 0 0 0 chr3 89860268 89860325 -137664253 + (TAAAA)n Simple_repeat Simple_repeat 2 65 0 1708 149 47 3 chr3 89861871 89862167 -137662411 + AluJb SINE Alu 3 311 -1 374 250 44 73 chr3 89862175 89862311 -137662267 - L2 LINE L2 -9 3304 3173 918 218 11 0 chr3 89862354 89862542 -137662036 - MER20 DNA MER1_type 0 219 30 288 315 119 88 chr3 89862607 89863067 -137661511 - L2 LINE L2 -1369 1945 1468 4744 35 10 2 chr3 89863067 89863643 -137660935 + L1PA3 LINE L1 5574 6154 -1 288 315 119 88 chr3 89863643 89863661 -137660917 - L2 LINE L2 -1846 1468 1452 32 26 0 0 chr3 89865250 89865289 -137659289 + AT_rich Low_complexity Low_complexity 1 39 0 4177 63 4 0 chr3 89866107 89866648 -137657930 - L1P LINE L1 -2087 4059 3517 21 71 0 0 chr3 89866821 89866863 -137657715 + AT_rich Low_complexity Low_complexity 1 42 0 22 88 0 0 chr3 89867187 89867244 -137657334 + AT_rich Low_complexity Low_complexity 1 57 0 724 249 98 44 chr3 89867348 89867778 -137656800 - L1ME4a LINE L1 -179 5942 5490 26 30 0 0 chr3 89867875 89867908 -137656670 + AT_rich Low_complexity Low_complexity 1 33 0 26 50 0 0 chr3 89868168 89868208 -137656370 + AT_rich Low_complexity Low_complexity 1 40 0 195 190 0 0 chr3 89869350 89869408 -137655170 + (CA)n Simple_repeat Simple_repeat 2 59 0 287 329 75 33 chr3 89869601 89869814 -137654764 - MLT1K LTR MaLR -205 383 162 520 190 10 0 chr3 89869930 89870030 -137654548 + L1PA16 LINE L1 6043 6143 -23 22 0 0 0 chr3 89870233 89870255 -137654323 + AT_rich Low_complexity Low_complexity 1 22 0 34 0 0 0 chr3 89870354 89870388 -137654190 + AT_rich Low_complexity Low_complexity 1 34 0 243 388 34 6 chr3 89870388 89870566 -137654012 - L2 LINE L2 -1254 2060 1878 756 197 0 0 chr3 89870719 89870846 -137653732 - MLT1B LTR MaLR -4 386 260 229 148 19 19 chr3 89870856 89870910 -137653668 + CT-rich Low_complexity Low_complexity 2 55 0 1636 202 0 6 chr3 89870925 89871237 -137653341 - AluJo SINE Alu -1 311 2 371 183 56 0 chr3 89871238 89871309 -137653269 - MLT1B LTR MaLR -115 275 201 23 0 0 0 chr3 89871349 89871372 -137653206 + AT_rich Low_complexity Low_complexity 1 23 0 266 268 0 0 chr3 89872240 89872296 -137652282 - L3 LINE CR1 -303 1274 1219 323 0 48 0 chr3 89872369 89872411 -137652167 + (TTTA)n Simple_repeat Simple_repeat 2 45 0 6539 26 0 0 chr3 89872411 89873172 -137651406 - L1PA3 LINE L1 -6 6149 5389 436 0 0 0 chr3 89873172 89873224 -137651354 + L1P LINE L1 3732 3783 -2363 3566 86 8 0 chr3 89873224 89873712 -137650866 - L1PA10 LINE L1 -9 6159 5668 26 0 0 0 chr3 89876014 89876040 -137648538 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 89876477 89876498 -137648080 + AT_rich Low_complexity Low_complexity 1 21 0 970 241 58 40 chr3 89876789 89876861 -137647717 + MER58B DNA MER1_type 5 74 -2346 392 0 21 0 chr3 89876861 89876909 -137647669 + (TG)n Simple_repeat Simple_repeat 2 50 0 970 241 58 40 chr3 89876909 89877015 -137647563 + MER58B DNA MER1_type 74 177 -2243 1769 165 149 11 chr3 89877015 89877391 -137647187 + MSTA LTR MaLR 1 428 0 970 241 58 40 chr3 89877391 89877539 -137647039 + MER58B DNA MER1_type 177 338 -3 2048 159 86 8 chr3 89877553 89877950 -137646628 + MSTA LTR MaLR 1 428 0 28 48 0 0 chr3 89878631 89878673 -137645905 + AT_rich Low_complexity Low_complexity 1 42 0 2209 286 171 42 chr3 89879134 89880181 -137644397 + L1M3c LINE L1 1 1182 -4959 1796 263 38 31 chr3 89880169 89880804 -137643774 + L1M4c LINE L1 1043 1681 -4703 * 1103 239 99 65 chr3 89881449 89881984 -137642594 - MLT1H1 LTR MaLR -2 553 1 1202 160 0 10 chr3 89882252 89882458 -137642120 + L1PB4 LINE L1 5951 6154 -2 241 278 14 0 chr3 89883529 89883601 -137640977 + MER5A DNA MER1_type 10 82 -107 264 238 0 32 chr3 89883956 89884019 -137640559 + L2 LINE L2 3251 3311 -2 194 268 0 18 chr3 89884048 89884104 -137640474 - MIR SINE MIR -56 206 152 499 173 71 79 chr3 89885880 89886007 -137638571 + MER94 DNA DNA 8 133 -1 265 243 114 0 chr3 89887348 89887418 -137637160 - MIR3 SINE MIR -19 189 112 216 363 111 15 chr3 89887507 89887642 -137636936 - MIR3 SINE MIR -28 180 33 188 302 0 0 chr3 89887798 89887851 -137636727 - L2 LINE L2 -4 3268 3216 315 356 67 0 chr3 89888123 89888272 -137636306 + MIR3 SINE MIR 31 189 -19 217 388 0 0 chr3 89889324 89889391 -137635187 - L2 LINE L2 -9 3263 3197 260 271 44 105 chr3 89890092 89890273 -137634305 + MIR SINE MIR 20 189 -73 201 359 73 52 chr3 89891969 89892161 -137632417 + L2 LINE L2 3077 3272 0 27 49 0 0 chr3 89893993 89894034 -137630544 + AT_rich Low_complexity Low_complexity 1 41 0 474 235 34 0 chr3 89894559 89894678 -137629900 - MER103 DNA DNA -25 141 19 9206 48 12 7 chr3 89894922 89896863 -137627715 - L1PA5 LINE L1 0 6154 4200 2297 246 61 44 chr3 89896986 89898105 -137626473 + L1M4c LINE L1 2030 3172 -3210 * 8046 199 32 45 chr3 89898082 89901030 -137623548 + L1MA10 LINE L1 3627 6554 -16 1394 204 69 20 chr3 89901170 89901518 -137623060 - Tigger6 DNA MER2_type -717 366 2 305 252 77 49 chr3 89902053 89902196 -137622382 - MLT1J LTR MaLR -260 251 105 21 71 0 0 chr3 89905164 89905206 -137619372 + AT_rich Low_complexity Low_complexity 1 42 0 195 155 169 70 chr3 89905792 89905863 -137618715 + MIR3 SINE MIR 125 202 -6 190 253 72 24 chr3 89906316 89906399 -137618179 - L3b LINE CR1 -336 1247 1161 22 56 0 0 chr3 89906616 89906652 -137617926 + AT_rich Low_complexity Low_complexity 1 36 0 263 222 12 0 chr3 89907776 89907857 -137616721 + (TA)n Simple_repeat Simple_repeat 2 83 0 24 0 0 0 chr3 89908468 89908492 -137616086 + AT_rich Low_complexity Low_complexity 1 24 0 1060 224 15 15 chr3 89908797 89909056 -137615522 - Charlie5 DNA MER1_type 0 2622 2364 189 0 0 0 chr3 89910835 89910856 -137613722 + (CAT)n Simple_repeat Simple_repeat 2 22 0 266 198 6 0 chr3 89910857 89910911 -137613667 + MER5A DNA MER1_type 40 106 -82 193 200 0 0 chr3 89911276 89911316 -137613262 + L3b LINE CR1 1244 1283 -300 207 70 47 23 chr3 89911539 89911582 -137612996 + (TTATA)n Simple_repeat Simple_repeat 5 48 0 1173 182 5 14 chr3 89914147 89914367 -137610211 - Tigger5 DNA MER2_type 0 2323 2106 656 263 57 24 chr3 89914511 89914720 -137609858 + MIR SINE MIR 5 220 -42 766 294 121 40 chr3 89914979 89915451 -137609127 + MLT1F LTR MaLR 1 510 -32 795 214 115 45 chr3 89915452 89915695 -137608883 - MER2 DNA MER2_type 0 345 86 21 0 0 0 chr3 89915896 89915917 -137608661 + AT_rich Low_complexity Low_complexity 1 21 0 446 207 11 0 chr3 89916035 89916122 -137608456 - MER2 DNA MER2_type -257 88 1 21 0 0 0 chr3 89916546 89916567 -137608011 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 89916874 89916896 -137607682 + AT_rich Low_complexity Low_complexity 1 22 0 872 54 0 0 chr3 89917302 89917414 -137607164 - L1PA4 LINE L1 0 6155 6044 215 272 97 86 chr3 89917480 89917737 -137606841 + L2 LINE L2 1803 2062 -1252 188 311 98 0 chr3 89918541 89918602 -137605976 + MIR SINE MIR 110 176 -86 7845 152 72 3 chr3 89918637 89920035 -137604543 - Tigger1 DNA MER2_type 0 2418 925 504 126 17 25 chr3 89920038 89920157 -137604421 + L1MA3 LINE L1 3381 3498 -4067 477 50 0 0 chr3 89920168 89920228 -137604350 + (GGAA)n Simple_repeat Simple_repeat 3 62 0 14209 169 21 32 chr3 89920228 89921861 -137602717 + L1MA3 LINE L1 3462 5111 -2613 1191 32 11 38 chr3 89921861 89922046 -137602532 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 14209 169 21 32 chr3 89922046 89922343 -137602235 + L1MA3 LINE L1 5111 5410 -2314 1621 191 3 7 chr3 89922343 89922652 -137601926 + AluJb SINE Alu 1 308 0 14209 169 21 32 chr3 89922652 89922701 -137601877 + L1MA3 LINE L1 5410 5458 -2266 2097 80 0 0 chr3 89922701 89922977 -137601601 + AluY SINE Alu 36 311 0 14209 169 21 32 chr3 89922977 89925276 -137599302 + L1MA3 LINE L1 5458 7694 -30 3836 171 36 4 chr3 89925330 89926024 -137598554 - Tigger1 DNA MER2_type -1695 723 8 2459 40 3 3 chr3 89926180 89926478 -137598100 + AluY SINE Alu 1 298 -13 369 188 0 0 chr3 89927071 89927156 -137597422 + GA-rich Low_complexity Low_complexity 3 87 0 519 241 0 0 chr3 89927167 89927308 -137597270 + GA-rich Low_complexity Low_complexity 4 144 0 197 270 281 45 chr3 89927784 89928143 -137596435 - L2 LINE L2 -1 3312 2869 331 358 37 16 chr3 89928294 89928481 -137596097 + MIR SINE MIR 1 191 -71 191 174 232 43 chr3 89928476 89928545 -137596033 - MIR SINE MIR 0 262 181 * 260 292 0 42 chr3 89928800 89928872 -137595706 + L2 LINE L2 3204 3272 0 237 180 0 0 chr3 89929227 89929277 -137595301 + (TA)n Simple_repeat Simple_repeat 2 51 0 189 0 0 0 chr3 89929408 89929429 -137595149 + (TG)n Simple_repeat Simple_repeat 1 21 0 438 20 0 0 chr3 89929938 89929989 -137594589 + (TG)n Simple_repeat Simple_repeat 2 52 0 22 35 0 0 chr3 89931543 89931572 -137593006 + AT_rich Low_complexity Low_complexity 1 29 0 464 239 33 106 chr3 89932118 89932298 -137592280 - L2 LINE L2 -5 3308 3142 1435 270 91 38 chr3 89932814 89933363 -137591215 - MLT1E LTR MaLR -2 591 14 186 372 18 26 chr3 89933969 89934082 -137590496 - MIR SINE MIR -114 148 37 243 400 0 0 chr3 89935164 89935254 -137589324 + L3 LINE CR1 1013 1102 -475 1029 40 0 0 chr3 89935501 89935627 -137588951 + (TTCC)n Simple_repeat Simple_repeat 3 128 0 497 152 0 0 chr3 89935627 89935706 -137588872 - AluSg/x SINE Alu -26 283 205 258 161 21 54 chr3 89936608 89936701 -137587877 + (TATAA)n Simple_repeat Simple_repeat 5 94 0 1518 228 21 31 chr3 89937845 89938266 -137586312 - L1M4 LINE L1 -3216 2930 2514 901 277 58 40 chr3 89938759 89939206 -137585372 - L1MC4 LINE L1 0 8042 7588 2250 114 11 6 chr3 89939295 89939647 -137584931 + L1PA14 LINE L1 5806 6159 -2 349 320 51 64 chr3 89939957 89940191 -137584387 + MIR SINE MIR 5 235 -27 298 133 0 0 chr3 89940641 89940686 -137583892 - L1MA5A LINE L1 -412 5885 5841 * 3496 206 14 30 chr3 89940681 89941521 -137583057 - L1 LINE L1 -2262 3884 3058 2295 75 3 3 chr3 89941576 89941868 -137582710 + AluY SINE Alu 1 292 -19 181 73 24 24 chr3 89941869 89941910 -137582668 + (TA)n Simple_repeat Simple_repeat 1 41 0 228 91 18 55 chr3 89941923 89941978 -137582600 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 23 54 0 0 chr3 89941978 89942015 -137582563 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 89942212 89942234 -137582344 + GC_rich Low_complexity Low_complexity 1 22 0 202 269 37 30 chr3 89942281 89942415 -137582163 + (TATAA)n Simple_repeat Simple_repeat 3 137 0 * 219 238 0 32 chr3 89942353 89942416 -137582162 + A-rich Low_complexity Low_complexity 3 63 0 28 33 0 0 chr3 89942441 89942471 -137582107 + AT_rich Low_complexity Low_complexity 1 30 0 88 107 0 0 chr3 89942543 89942674 -137581904 + AT_rich Low_complexity Low_complexity 1 131 0 221 411 0 0 chr3 89942806 89942896 -137581682 + L3 LINE CR1 1013 1102 -475 849 47 0 0 chr3 89943143 89943249 -137581329 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 1952 128 0 17 chr3 89943249 89943537 -137581041 - AluSc SINE Alu -26 283 1 24 32 0 0 chr3 89943664 89943695 -137580883 + AT_rich Low_complexity Low_complexity 1 31 0 234 0 0 0 chr3 89944274 89944300 -137580278 + (T)n Simple_repeat Simple_repeat 1 26 0 4172 78 17 5 chr3 89948002 89948583 -137575995 + L1PA7 LINE L1 5560 6147 -7 5882 139 38 17 chr3 89948864 89950329 -137574249 - L1PB1 LINE L1 0 6151 4646 284 335 231 12 chr3 89950417 89950668 -137573910 - L2 LINE L2 0 3272 2967 22 0 0 0 chr3 89951720 89951742 -137572836 + AT_rich Low_complexity Low_complexity 1 22 0 268 262 71 36 chr3 89952928 89953012 -137571566 + MIR SINE MIR 162 248 -14 21 0 0 0 chr3 89953013 89953034 -137571544 + AT_rich Low_complexity Low_complexity 1 21 0 259 185 54 76 chr3 89953161 89953253 -137571325 + MER97b DNA MER1_type? 84 173 -880 390 279 103 29 chr3 89953553 89953689 -137570889 + L2 LINE L2 3161 3306 -7 283 262 12 0 chr3 89953861 89953945 -137570633 - MIR SINE MIR 0 262 178 217 325 0 0 chr3 89954173 89954250 -137570328 + T-rich Low_complexity Low_complexity 4 80 0 311 202 22 79 chr3 89954359 89954448 -137570130 + MIR SINE MIR 71 154 -108 662 279 31 14 chr3 89954472 89954694 -137569884 - L1MC4 LINE L1 -1032 7010 6785 24 32 0 0 chr3 89955073 89955104 -137569474 + AT_rich Low_complexity Low_complexity 1 31 0 555 247 116 65 chr3 89955261 89955645 -137568933 - MLT1J LTR MaLR -8 480 60 478 169 0 0 chr3 89955678 89955761 -137568817 - AluS SINE Alu -230 83 1 742 268 169 56 chr3 89955961 89956655 -137567923 - LTR41 LTR ERVL -1 772 1 193 387 77 7 chr3 89959285 89959440 -137565138 + L3b LINE CR1 1191 1356 -227 224 272 109 43 chr3 89959550 89959642 -137564936 + MIR SINE MIR 152 249 -13 28 79 0 0 chr3 89959657 89959720 -137564858 + AT_rich Low_complexity Low_complexity 1 63 0 945 66 0 0 chr3 89960720 89960842 -137563736 + L1PA7 LINE L1 6033 6154 0 2330 106 3 0 chr3 89960962 89961319 -137563259 - AluSq SINE Alu 0 358 1 1408 195 3 52 chr3 89962046 89962354 -137562224 + AluJo SINE Alu 1 293 -19 239 331 108 0 chr3 89964479 89964573 -137560005 + MIR3 SINE MIR 73 177 -31 1217 171 122 23 chr3 89965268 89965331 -137559247 - AluJo SINE Alu 0 607 552 1158 54 0 32 chr3 89965331 89965517 -137559061 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1217 171 122 23 chr3 89965517 89965725 -137558853 - AluJo SINE Alu -55 552 366 213 39 0 0 chr3 89965725 89965751 -137558827 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 1662 158 25 28 chr3 89965751 89966036 -137558542 - AluSx SINE Alu -28 284 1 1217 171 122 23 chr3 89966036 89966136 -137558442 - AluJo SINE Alu -240 367 23 22 56 0 0 chr3 89966378 89966414 -137558164 + AT_rich Low_complexity Low_complexity 1 36 0 181 75 94 0 chr3 89966755 89966808 -137557770 + (TA)n Simple_repeat Simple_repeat 1 58 0 1529 226 21 31 chr3 89967967 89968388 -137556190 - L1M4 LINE L1 -3216 2930 2514 901 277 58 40 chr3 89968881 89969328 -137555250 - L1MC4 LINE L1 0 8042 7588 2250 114 11 6 chr3 89969417 89969769 -137554809 + L1PA14 LINE L1 5806 6159 -2 349 320 51 64 chr3 89970079 89970313 -137554265 + MIR SINE MIR 5 235 -27 298 133 0 0 chr3 89970763 89970808 -137553770 - L1MA5A LINE L1 -412 5885 5841 * 3496 206 14 30 chr3 89970803 89971643 -137552935 - L1 LINE L1 -2262 3884 3058 2338 75 0 3 chr3 89971698 89971991 -137552587 + AluY SINE Alu 1 292 -19 271 60 40 0 chr3 89971992 89972042 -137552536 + (TA)n Simple_repeat Simple_repeat 1 52 0 216 305 62 62 chr3 89973654 89973782 -137550796 - MIR SINE MIR -16 246 119 212 372 7 36 chr3 89973799 89973936 -137550642 + MIR3 SINE MIR 13 145 -63 24 32 0 0 chr3 89974064 89974095 -137550483 + AT_rich Low_complexity Low_complexity 1 31 0 49 76 0 0 chr3 89974540 89974645 -137549933 + AT_rich Low_complexity Low_complexity 1 105 0 310 316 169 0 chr3 89975021 89975157 -137549421 + MER5A DNA MER1_type 31 189 0 25 0 0 0 chr3 89976006 89976031 -137548547 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3 89976273 89976296 -137548282 + AT_rich Low_complexity Low_complexity 1 23 0 333 326 71 41 chr3 89977079 89977373 -137547205 - L3 LINE CR1 -710 867 565 23 54 0 0 chr3 89979291 89979328 -137545250 + AT_rich Low_complexity Low_complexity 1 37 0 459 259 57 19 chr3 89979660 89979818 -137544760 + MER63A DNA MER1_type 9 172 -38 1623 193 45 8 chr3 89979883 89980235 -137544343 - MLT1A1 LTR MaLR 0 365 1 21 82 0 0 chr3 89980904 89980953 -137543625 + AT_rich Low_complexity Low_complexity 1 49 0 1871 122 0 22 chr3 89981264 89981534 -137543044 + AluSc SINE Alu 1 264 -45 557 259 79 83 chr3 89981804 89982070 -137542508 + LTR16C LTR ERVL 204 468 -23 239 355 130 0 chr3 89982199 89982337 -137542241 + MIR3 SINE MIR 33 188 -20 997 163 24 24 chr3 89982522 89982731 -137541847 - MER3 DNA MER1_type 0 209 1 2763 13 0 0 chr3 89982813 89983120 -137541458 + AluYb8 SINE Alu 1 307 -11 393 22 0 0 chr3 89985370 89985416 -137539162 + (TC)n Simple_repeat Simple_repeat 2 47 0 829 290 49 14 chr3 89985425 89985833 -137538745 - L1MC4a LINE L1 -528 5831 5523 766 219 21 55 chr3 89987651 89987888 -137536690 - L1MA9 LINE L1 -38 6274 6046 676 276 7 0 chr3 89987905 89988057 -137536521 - MER5A DNA MER1_type -6 183 31 2327 50 0 0 chr3 89988338 89988619 -137535959 - AluY SINE Alu -16 295 15 313 380 42 23 chr3 89989002 89989218 -137535360 + L2 LINE L2 2623 2842 -472 1475 190 39 7 chr3 89989626 89989910 -137534668 - AluSx SINE Alu -17 295 3 252 323 90 8 chr3 89991403 89991536 -137533042 - MIR SINE MIR -54 208 65 276 327 50 10 chr3 89991686 89991787 -137532791 - MIR SINE MIR -65 143 39 210 71 0 0 chr3 89992243 89992271 -137532307 + (TG)n Simple_repeat Simple_repeat 2 29 0 468 168 54 195 chr3 89992577 89992762 -137531816 + MIR SINE MIR 91 249 -13 412 366 56 21 chr3 89992778 89993065 -137531513 + L2 LINE L2 2045 2341 -973 255 133 0 0 chr3 89993408 89993453 -137531125 + (GGAA)n Simple_repeat Simple_repeat 3 47 0 571 231 21 86 chr3 89993453 89993639 -137530939 - MLT1J LTR MaLR -260 251 78 743 253 64 78 chr3 89993648 89994056 -137530522 - MER39 LTR ERV1 0 707 306 266 200 20 0 chr3 89994088 89994138 -137530440 - MER34 LTR ERV1 -491 51 1 283 385 58 22 chr3 89994311 89994670 -137529908 + L2 LINE L2 2665 3035 -237 688 133 0 0 chr3 89994711 89994816 -137529762 + AluJb SINE Alu 208 312 0 194 312 184 9 chr3 89994954 89995063 -137529515 + L2 LINE L2 3137 3264 -8 1096 193 63 38 chr3 89996525 89996841 -137527737 - MER5C DNA MER1_type 0 324 1 21 0 0 0 chr3 89998065 89998086 -137526492 + AT_rich Low_complexity Low_complexity 1 21 0 612 278 62 24 chr3 90000342 90000551 -137524027 - MIR SINE MIR -4 258 42 2518 43 0 0 chr3 90000692 90000997 -137523581 - AluY SINE Alu -6 305 1 262 299 70 32 chr3 90001626 90001783 -137522795 + MER5B DNA MER1_type 1 163 -15 187 324 235 0 chr3 90001910 90002012 -137522566 + L2 LINE L2 3143 3268 -4 2820 6 0 0 chr3 90002621 90002932 -137521646 + AluYa5 SINE Alu 1 311 0 21 36 0 0 chr3 90003861 90003889 -137520689 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr3 90004112 90004138 -137520440 + AT_rich Low_complexity Low_complexity 1 26 0 240 35 0 0 chr3 90004899 90004923 -137519655 + (TCG)n Simple_repeat Simple_repeat 1 53 0 240 35 0 0 chr3 90004923 90004952 -137519626 + (TCG)n Simple_repeat Simple_repeat 3 31 0 597 202 0 0 chr3 90004970 90005079 -137519499 - FLAM_A SINE Alu -33 109 1 415 302 63 25 chr3 90006071 90006230 -137518348 - MIR3 SINE MIR -12 196 32 1113 176 47 111 chr3 90006327 90006714 -137517864 + MLT1A1 LTR MaLR 4 365 0 1954 215 91 27 chr3 90006728 90007012 -137517566 - MLT1D LTR MaLR 0 505 178 1967 151 3 0 chr3 90007012 90007303 -137517275 - AluSx SINE Alu -20 292 1 1954 215 91 27 chr3 90007303 90007493 -137517085 - MLT1D LTR MaLR -327 178 1 2078 143 0 0 chr3 90007746 90008039 -137516539 + AluSx SINE Alu 5 297 -15 697 243 49 0 chr3 90009016 90009201 -137515377 - MLT1B LTR MaLR 0 390 197 277 286 0 13 chr3 90009208 90009285 -137515293 + GA-rich Low_complexity Low_complexity 2 77 0 705 165 85 30 chr3 90009309 90009473 -137515105 - MLT1B LTR MaLR -217 173 1 426 252 183 8 chr3 90010613 90010744 -137513834 - MER5A DNA MER1_type 0 189 36 250 148 49 6 chr3 90013290 90013390 -137511188 + (TG)n Simple_repeat Simple_repeat 1 169 0 318 26 0 0 chr3 90013438 90013477 -137511101 + (TG)n Simple_repeat Simple_repeat 2 40 0 372 356 52 0 chr3 90015678 90015793 -137508785 - L2 LINE L2 -14 3258 3138 35 24 0 0 chr3 90016073 90016115 -137508463 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr3 90017606 90017629 -137506949 + AT_rich Low_complexity Low_complexity 1 23 0 712 217 133 6 chr3 90018166 90018346 -137506232 - MER3 DNA MER1_type 0 209 7 216 0 0 0 chr3 90018547 90018571 -137506007 + (T)n Simple_repeat Simple_repeat 1 24 0 214 362 149 0 chr3 90018604 90018698 -137505880 + MIR3 SINE MIR 49 156 -52 23 33 0 0 chr3 90018728 90018758 -137505820 + AT_rich Low_complexity Low_complexity 1 30 0 1784 161 0 0 chr3 90019436 90019721 -137504857 + AluSx SINE Alu 1 285 -27 444 341 93 31 chr3 90020935 90021549 -137503029 - L2 LINE L2 -6 3307 2604 * 470 345 83 13 chr3 90021521 90021750 -137502828 - MIR SINE MIR -15 247 3 523 303 118 39 chr3 90022128 90022845 -137501733 - L1M4 LINE L1 -1940 4206 3433 852 339 70 35 chr3 90022847 90023473 -137501105 - L2 LINE L2 -2614 700 53 1276 325 108 15 chr3 90023750 90024423 -137500155 + L2 LINE L2 838 1573 -1741 2392 145 5 2 chr3 90024876 90025283 -137499295 - L1MA4A LINE L1 0 6303 5896 245 195 13 39 chr3 90026431 90026508 -137498070 + CT-rich Low_complexity Low_complexity 2 76 0 21 36 0 0 chr3 90026689 90026717 -137497861 + AT_rich Low_complexity Low_complexity 1 28 0 32 43 0 0 chr3 90026760 90026806 -137497772 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr3 90029765 90029794 -137494784 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr3 90030161 90030193 -137494385 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 90030625 90030646 -137493932 + AT_rich Low_complexity Low_complexity 1 21 0 333 245 176 0 chr3 90030977 90031079 -137493499 - L2 LINE L2 -1 3312 3193 1910 156 31 19 chr3 90031286 90031646 -137492932 - THE1B LTR MaLR 0 364 1 374 291 131 21 chr3 90032497 90032734 -137491844 + L2 LINE L2 3047 3309 -4 1203 137 0 0 chr3 90032772 90032940 -137491638 + AluSp SINE Alu 137 304 -9 25 0 0 0 chr3 90032954 90032979 -137491599 + AT_rich Low_complexity Low_complexity 1 25 0 323 278 122 88 chr3 90033269 90033589 -137490989 - L1ME4a LINE L1 -102 6019 5689 430 374 53 24 chr3 90034225 90034562 -137490016 - L1M4 LINE L1 -2025 4121 3775 772 273 55 31 chr3 90037848 90038104 -137486474 - MIR SINE MIR 0 262 1 323 171 71 143 chr3 90038339 90038479 -137486099 + L2 LINE L2 3184 3313 0 378 301 37 7 chr3 90038503 90038639 -137485939 + MLT1L LTR MaLR 420 559 -56 288 0 0 0 chr3 90039174 90039206 -137485372 + (TG)n Simple_repeat Simple_repeat 2 33 0 2069 116 0 0 chr3 90039206 90039490 -137485088 - AluSx SINE Alu -28 284 1 1240 169 50 46 chr3 90040301 90040561 -137484017 + AluJo SINE Alu 6 266 -46 647 174 47 34 chr3 90040763 90040912 -137483666 + L1PB2 LINE L1 6001 6151 0 189 398 57 16 chr3 90041225 90041348 -137483230 + MIR3 SINE MIR 3 130 -78 2372 84 0 3 chr3 90041796 90042105 -137482473 + AluSc SINE Alu 1 308 -1 860 204 6 12 chr3 90043156 90043328 -137481250 + AluJb SINE Alu 122 292 -20 223 326 109 22 chr3 90043481 90043573 -137481005 + MIR3 SINE MIR 78 177 -31 22 0 0 0 chr3 90043685 90043707 -137480871 + AT_rich Low_complexity Low_complexity 1 22 0 518 302 54 54 chr3 90046328 90046626 -137477952 + L2 LINE L2 3016 3313 0 2139 103 3 35 chr3 90046729 90047048 -137477530 + AluSq SINE Alu 1 309 -4 1378 187 46 78 chr3 90047119 90047475 -137477103 - MLT1A1 LTR MaLR 0 365 3 1336 189 39 28 chr3 90047703 90047989 -137476589 - AluJb SINE Alu -23 289 1 1303 206 60 26 chr3 90049356 90049476 -137475102 - MER45R DNA AcHobo -7 1574 1460 1771 135 82 28 chr3 90049476 90049832 -137474746 + THE1C LTR MaLR 1 375 0 1303 206 60 26 chr3 90049832 90050060 -137474518 - MER45R DNA AcHobo -121 1460 1214 2280 98 42 14 chr3 90050063 90050421 -137474157 - L1P4 LINE L1 -547 5621 5254 872 81 0 8 chr3 90050434 90050558 -137474020 + L1PA10 LINE L1 6046 6168 0 3068 198 43 4 chr3 90050568 90051245 -137473333 - MER45R DNA AcHobo -363 1218 516 456 214 0 0 chr3 90051340 90051424 -137473154 - MER45 DNA AcHobo 0 1581 1498 1958 136 0 0 chr3 90052677 90052956 -137471622 + AluSx SINE Alu 1 279 -33 234 105 0 0 chr3 90053018 90053056 -137471522 + (TTTC)n Simple_repeat Simple_repeat 2 39 0 208 234 0 21 chr3 90053060 90053107 -137471471 - L2 LINE L2 -44 3269 3224 2224 82 0 0 chr3 90053377 90053656 -137470922 + AluY SINE Alu 1 279 -32 21 0 0 0 chr3 90055527 90055548 -137469030 + AT_rich Low_complexity Low_complexity 1 21 0 1513 239 19 30 chr3 90055552 90055921 -137468657 + MLT1A1 LTR MaLR 1 365 0 321 365 106 11 chr3 90056066 90056255 -137468323 + MIR SINE MIR 25 231 -31 2677 19 0 10 chr3 90056274 90056584 -137467994 + AluYa5 SINE Alu 1 307 -4 269 196 0 0 chr3 90057163 90057214 -137467364 - L2 LINE L2 0 3313 3263 479 261 70 6 chr3 90058756 90058913 -137465665 - L1ME LINE L1 -378 5743 5577 988 245 133 42 chr3 90059333 90059733 -137464845 + MLT1D LTR MaLR 2 437 -68 1540 262 132 30 chr3 90060016 90060328 -137464250 + L2 LINE L2 2001 2280 -1034 2093 142 0 0 chr3 90060328 90060637 -137463941 + AluSx SINE Alu 1 309 -3 1540 262 132 30 chr3 90060637 90061016 -137463562 + L2 LINE L2 2280 2762 -552 310 321 149 31 chr3 90061193 90061374 -137463204 + L2 LINE L2 2742 2900 -413 1664 153 64 3 chr3 90061374 90061656 -137462922 - AluSx SINE Alu -13 299 1 310 321 149 31 chr3 90061656 90061824 -137462754 + L2 LINE L2 2900 3124 -189 1948 215 117 4 chr3 90061872 90062324 -137462254 - MLT2B2 LTR ERVL 0 515 13 255 231 15 15 chr3 90062342 90062407 -137462171 + L2 LINE L2 3179 3243 -70 22 35 0 0 chr3 90062646 90062675 -137461903 + AT_rich Low_complexity Low_complexity 1 29 0 252 0 0 0 chr3 90062901 90062929 -137461649 + (CA)n Simple_repeat Simple_repeat 2 29 0 2195 98 3 10 chr3 90063038 90063333 -137461245 - AluSx SINE Alu -19 293 1 25 51 0 0 chr3 90063597 90063636 -137460942 + AT_rich Low_complexity Low_complexity 1 39 0 195 42 0 0 chr3 90063776 90063800 -137460778 + (CA)n Simple_repeat Simple_repeat 2 25 0 1990 113 16 22 chr3 90065812 90066123 -137458455 + AluSc SINE Alu 1 309 0 1683 167 10 7 chr3 90066317 90066611 -137457967 - AluJb SINE Alu -17 295 1 659 169 145 0 chr3 90066713 90066882 -137457696 - L1MC4a LINE L1 -140 7668 7497 1277 186 8 24 chr3 90066883 90067130 -137457448 - MLT1A1 LTR MaLR -1 364 122 1060 173 0 49 chr3 90067121 90067346 -137457232 - MLT1A1 LTR MaLR -138 227 14 * 618 234 14 7 chr3 90067350 90067495 -137457083 - L1MC4 LINE L1 -493 7549 7404 1642 117 12 0 chr3 90069467 90069707 -137454871 + AluSc SINE Alu 37 279 -30 2420 83 0 3 chr3 90070043 90070357 -137454221 + AluSp SINE Alu 1 313 0 1771 146 36 18 chr3 90070883 90071164 -137453414 + AluSg SINE Alu 1 286 -24 2505 50 0 3 chr3 90071354 90071657 -137452921 - AluY SINE Alu -9 302 1 446 149 0 0 chr3 90072121 90072195 -137452383 + L1MA6 LINE L1 6216 6289 -11 855 356 46 53 chr3 90072210 90072906 -137451672 + L2 LINE L2 2208 2898 -416 185 359 0 13 chr3 90073156 90073234 -137451344 + L2 LINE L2 3231 3307 -6 440 273 49 44 chr3 90074039 90074222 -137450356 + MIR3 SINE MIR 19 202 -6 234 316 60 26 chr3 90075171 90075288 -137449290 - MIR SINE MIR -25 237 117 291 280 85 17 chr3 90076187 90076273 -137448305 + MLT1H1 LTR MaLR 7 105 -450 2229 42 0 0 chr3 90076273 90076535 -137448043 - AluY SINE Alu -19 292 31 291 280 85 17 chr3 90076535 90076566 -137448012 + MLT1H1 LTR MaLR 105 132 -423 21 0 0 0 chr3 90076650 90076671 -137447907 + AT_rich Low_complexity Low_complexity 1 21 0 3065 269 58 34 chr3 90076806 90077786 -137446792 - L1MEc LINE L1 -5020 1376 421 196 26 26 53 chr3 90077786 90077824 -137446754 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2152 121 0 0 chr3 90077826 90078115 -137446463 - AluSx SINE Alu -23 289 1 3065 269 58 34 chr3 90078115 90078438 -137446140 - L1MEc LINE L1 -5975 421 39 30 0 0 0 chr3 90078584 90078614 -137445964 + AT_rich Low_complexity Low_complexity 1 30 0 219 343 104 19 chr3 90078669 90078937 -137445641 - L3 LINE CR1 -122 1455 1165 287 377 13 4 chr3 90079286 90079522 -137445056 - L1MEd LINE L1 -4542 1589 1352 313 295 119 25 chr3 90079668 90079953 -137444625 - L1MEd LINE L1 -4870 1249 938 380 84 0 3 chr3 90079961 90080024 -137444554 - Alu SINE Alu 0 300 248 364 282 82 43 chr3 90080024 90080089 -137444489 - L1MEd LINE L1 -5122 997 936 2114 69 6 79 chr3 90080089 90080406 -137444172 - AluSx SINE Alu -18 294 1 364 282 82 43 chr3 90080406 90080838 -137443740 - L1MEd LINE L1 -5183 936 450 487 151 9 85 chr3 90081109 90081215 -137443363 + FLAM_A SINE Alu 1 98 -44 6107 89 6 0 chr3 90185437 90186243 -137338335 - L1P LINE L1 -5334 812 2 2163 131 16 0 chr3 90186601 90186962 -137337616 - AluSx SINE Alu 0 366 1 246 346 83 90 chr3 90187736 90187896 -137336682 + L2 LINE L2 2865 3025 -247 2075 125 3 3 chr3 90187896 90188191 -137336387 - AluSg1 SINE Alu -14 295 1 246 346 83 90 chr3 90188191 90188440 -137336138 + L2 LINE L2 3025 3271 -1 1979 132 0 16 chr3 90188482 90188793 -137335785 - AluSq SINE Alu -7 306 1 368 275 0 11 chr3 90188945 90189036 -137335542 - L1MC4 LINE L1 -1339 6703 6614 203 194 0 0 chr3 90189036 90189072 -137335506 + (TA)n Simple_repeat Simple_repeat 2 37 0 367 291 77 64 chr3 90189106 90189310 -137335268 + MIR SINE MIR 31 241 -21 2250 108 0 3 chr3 90189534 90189841 -137334737 - AluSg SINE Alu -4 306 1 21 0 0 0 chr3 90191483 90191504 -137333074 + AT_rich Low_complexity Low_complexity 1 21 0 23 105 0 0 chr3 90191795 90191881 -137332697 + AT_rich Low_complexity Low_complexity 1 86 0 204 255 0 0 chr3 90192133 90192180 -137332398 + A-rich Low_complexity Low_complexity 1 47 0 752 246 53 42 chr3 90192828 90193113 -137331465 + MLT1D LTR MaLR 3 290 -215 584 253 40 13 chr3 90193113 90193263 -137331315 + L2 LINE L2 3159 3312 -1 442 374 23 26 chr3 90193434 90193725 -137330853 - L2 LINE L2 -256 3057 2769 2299 113 0 6 chr3 90193778 90194089 -137330489 + AluSx SINE Alu 1 309 -3 201 361 56 0 chr3 90194154 90194226 -137330352 - L2 LINE L2 -93 3179 3104 1494 190 10 14 chr3 90194780 90195075 -137329503 - AluJb SINE Alu -13 299 6 2240 114 0 0 chr3 90195284 90195592 -137328986 - AluSc SINE Alu -1 308 1 21 0 0 0 chr3 90197269 90197290 -137327288 + AT_rich Low_complexity Low_complexity 1 21 0 207 86 0 29 chr3 90198063 90198098 -137326480 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 2016 137 34 3 chr3 90200046 90200368 -137324210 - MER47A DNA MER2_type -8 358 27 22 35 0 0 chr3 90200933 90200962 -137323616 + AT_rich Low_complexity Low_complexity 1 29 0 1097 172 11 0 chr3 90201602 90201788 -137322790 - AluJb SINE Alu -2 310 123 213 94 0 0 chr3 90201850 90201882 -137322696 + (CA)n Simple_repeat Simple_repeat 2 33 0 400 48 0 0 chr3 90201907 90201969 -137322609 - L1P LINE L1 -800 5331 5270 1548 61 13 40 chr3 90201969 90202195 -137322383 + L1PA7 LINE L1 5933 6154 0 200 247 54 0 chr3 90202700 90202793 -137321785 + (CTA)n Simple_repeat Simple_repeat 1 98 0 1435 155 101 32 chr3 90202847 90203124 -137321454 + AluSq SINE Alu 2 297 -16 1704 150 31 11 chr3 90203542 90203829 -137320749 - AluJo SINE Alu -19 293 1 2045 125 10 3 chr3 90204536 90204832 -137319746 + AluSq SINE Alu 9 306 -7 528 311 79 15 chr3 90205524 90205791 -137318787 - L2 LINE L2 -18 3295 3012 229 299 47 9 chr3 90206061 90206168 -137318410 - L2 LINE L2 -1615 1699 1589 25 0 0 0 chr3 90207146 90207171 -137317407 + AT_rich Low_complexity Low_complexity 1 25 0 255 284 37 12 chr3 90208756 90208837 -137315741 + MIR3 SINE MIR 124 206 -2 908 29 0 0 chr3 90208851 90208953 -137315625 - AluY SINE Alu -15 296 195 1114 179 20 0 chr3 90209257 90209458 -137315120 - L1MC1 LINE L1 -5 6328 6124 2683 138 71 62 chr3 90209458 90210066 -137314512 - MER4B LTR ERV1 -1 778 1 3763 186 29 58 chr3 90210067 90210375 -137314203 - L1MC1 LINE L1 -206 6127 5812 1300 219 7 31 chr3 90210375 90210667 -137313911 - AluJb SINE Alu -27 285 1 3763 186 29 58 chr3 90210667 90210700 -137313878 - L1MC1 LINE L1 -521 5812 5780 1166 209 12 98 chr3 90210700 90210908 -137313670 - AluJb SINE Alu -2 300 128 450 0 0 0 chr3 90210908 90210958 -137313620 + (TG)n Simple_repeat Simple_repeat 1 50 0 1166 209 12 98 chr3 90210958 90211075 -137313503 - AluJb SINE Alu -174 128 3 3763 186 29 58 chr3 90211075 90211916 -137312662 - L1MC1 LINE L1 -553 5780 4980 30 0 0 0 chr3 90212212 90212242 -137312336 + AT_rich Low_complexity Low_complexity 1 30 0 515 206 0 71 chr3 90212466 90212592 -137311986 + MER8 DNA MER2_type 28 144 -95 3157 122 97 163 chr3 90212597 90213483 -137311095 - pTR5 LTR ERV1 0 2438 1611 566 190 57 63 chr3 90213584 90213742 -137310836 - pTR5 LTR ERV1 -1539 899 743 390 203 0 0 chr3 90213754 90213818 -137310760 + MER2 DNA MER2_type 282 345 0 249 343 51 9 chr3 90214691 90214874 -137309704 - MIR SINE MIR -59 203 17 249 167 0 0 chr3 90216055 90216109 -137308469 + (TG)n Simple_repeat Simple_repeat 1 54 0 376 339 72 17 chr3 90216740 90216920 -137307658 + MIR SINE MIR 23 212 -50 2272 97 3 7 chr3 90217699 90218009 -137306569 + AluSc SINE Alu 1 309 0 366 23 0 0 chr3 90219425 90219468 -137305110 + (TG)n Simple_repeat Simple_repeat 2 44 0 254 239 0 60 chr3 90220860 90220927 -137303651 + MIR SINE MIR 38 100 -162 1274 207 79 143 chr3 90220954 90221750 -137302828 + LTR1B LTR ERV1 1 745 -81 1684 114 103 0 chr3 90221992 90222255 -137302323 - AluSx SINE Alu -19 293 4 28 0 0 0 chr3 90222911 90222939 -137301639 + AT_rich Low_complexity Low_complexity 1 28 0 405 0 0 0 chr3 90223485 90223530 -137301048 + (TA)n Simple_repeat Simple_repeat 2 46 0 540 284 39 43 chr3 90224230 90224462 -137300116 - MIR SINE MIR -12 250 20 188 268 12 0 chr3 90225871 90225953 -137298625 + CT-rich Low_complexity Low_complexity 3 85 0 220 159 0 23 chr3 90225955 90225999 -137298579 - L2 LINE L2 -1 3312 3270 419 296 21 14 chr3 90226951 90227093 -137297485 - MIR SINE MIR -41 221 79 3753 160 68 20 chr3 90228083 90228871 -137295707 - LTR1B LTR ERV1 0 826 1 1159 229 66 71 chr3 90229077 90229367 -137295211 - MLT1C LTR MaLR 0 467 178 2068 129 10 0 chr3 90229367 90229670 -137294908 - AluSq SINE Alu -5 308 3 1159 229 66 71 chr3 90229670 90229846 -137294732 - MLT1C LTR MaLR -289 178 3 33 0 0 0 chr3 90229851 90229884 -137294694 + AT_rich Low_complexity Low_complexity 1 33 0 472 341 44 22 chr3 90231967 90232193 -137292385 - L2 LINE L2 -408 2906 2676 204 225 0 0 chr3 90232909 90232949 -137291629 + MIR3 SINE MIR 121 160 -48 208 323 84 77 chr3 90232968 90233123 -137291455 + MER5A DNA MER1_type 10 165 -24 * 462 294 21 28 chr3 90232985 90233128 -137291450 - MER5B DNA MER1_type -17 161 20 335 317 89 22 chr3 90233437 90233617 -137290961 + L1ME LINE L1 5592 5783 -338 34977 41 4 1 chr3 90233799 90238901 -137285677 - L1PA4 LINE L1 -6 6149 1034 221 128 21 21 chr3 90241232 90241279 -137283299 + T-rich Low_complexity Low_complexity 4 50 0 503 280 24 0 chr3 90241282 90241407 -137283171 - MER5B DNA MER1_type -50 128 1 402 325 119 12 chr3 90241916 90242076 -137282502 + MER5B DNA MER1_type 1 177 -1 345 323 168 6 chr3 90243091 90243258 -137281320 - MIR3 SINE MIR -12 196 3 257 305 59 141 chr3 90243493 90243847 -137280731 - L2 LINE L2 0 3272 2948 2640 108 3 3 chr3 90244095 90244456 -137280122 - THE1C LTR MaLR 0 375 15 21 0 0 0 chr3 90244923 90244944 -137279634 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 90245307 90245330 -137279248 + AT_rich Low_complexity Low_complexity 1 23 0 405 0 0 0 chr3 90245587 90245632 -137278946 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 2018 126 11 0 chr3 90245632 90245909 -137278669 - AluSx SINE Alu -32 280 1 24 67 0 0 chr3 90245917 90245962 -137278616 + AT_rich Low_complexity Low_complexity 1 45 0 593 258 50 140 chr3 90246515 90246645 -137277933 + MIR SINE MIR 9 102 -160 1611 139 0 122 chr3 90246645 90246982 -137277596 - AluJb SINE Alu -6 296 1 593 258 50 140 chr3 90246982 90247130 -137277448 + MIR SINE MIR 102 262 0 414 186 0 108 chr3 90248394 90248523 -137276055 + L1MA9 LINE L1 6174 6288 -24 201 74 0 0 chr3 90248532 90248559 -137276019 + (TA)n Simple_repeat Simple_repeat 2 28 0 1717 136 0 0 chr3 90252382 90252625 -137271953 + AluSq SINE Alu 1 243 -70 856 138 8 0 chr3 90252625 90252755 -137271823 + AluSg/x SINE Alu 167 297 -13 23 0 0 0 chr3 90252943 90252966 -137271612 + AT_rich Low_complexity Low_complexity 1 23 0 236 273 61 0 chr3 90253822 90253843 -137270735 - MER5B DNA MER1_type -108 70 52 225 108 0 0 chr3 90253843 90253880 -137270698 + (TTTTG)n Simple_repeat Simple_repeat 2 38 0 236 273 61 0 chr3 90253880 90253924 -137270654 - MER5B DNA MER1_type -126 52 1 2056 131 3 0 chr3 90256585 90256882 -137267696 + AluSx SINE Alu 1 298 -14 21 36 0 0 chr3 90256890 90256918 -137267660 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 90257353 90257374 -137267204 + AT_rich Low_complexity Low_complexity 1 21 0 1657 207 45 24 chr3 90257827 90258208 -137266370 - MSTD LTR MaLR 0 396 8 1087 285 110 75 chr3 90258220 90258830 -137265748 - MLT-int LTR MaLR -489 1246 616 1802 159 64 17 chr3 90258830 90259176 -137265402 + THE1B LTR MaLR 1 362 -2 1661 244 33 7 chr3 90259178 90259601 -137264977 - MLT-int LTR MaLR -1138 597 164 2484 65 0 3 chr3 90259759 90260056 -137264522 + AluY SINE Alu 3 300 -11 432 0 0 0 chr3 90260056 90260104 -137264474 + (TA)n Simple_repeat Simple_repeat 2 49 0 23 0 0 0 chr3 90260167 90260190 -137264388 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr3 90260715 90260757 -137263821 + AT_rich Low_complexity Low_complexity 1 42 0 979 153 62 48 chr3 90261321 90261530 -137263048 + AluJo SINE Alu 87 298 -14 353 327 127 3 chr3 90261958 90262185 -137262393 - MIR3 SINE MIR -11 251 1 1137 167 0 0 chr3 90265722 90265902 -137258676 + AluSg/x SINE Alu 128 307 -3 252 336 10 0 chr3 90266239 90266343 -137258235 + L2 LINE L2 2931 3035 -237 390 304 35 9 chr3 90266559 90266674 -137257904 + L2 LINE L2 3192 3309 -4 186 253 11 0 chr3 90267895 90267950 -137256628 - MIR SINE MIR -89 119 63 973 189 12 0 chr3 90269020 90269184 -137255394 - FRAM SINE Alu -11 165 1 21 0 0 0 chr3 90269930 90269951 -137254627 + AT_rich Low_complexity Low_complexity 1 21 0 213 180 0 0 chr3 90270094 90270144 -137254434 + (ATG)n Simple_repeat Simple_repeat 3 52 0 214 311 291 0 chr3 90270147 90270298 -137254280 - MIR SINE MIR -2 260 66 3829 96 11 0 chr3 90270505 90271057 -137253521 - L1PA13 LINE L1 -6 6157 5600 260 268 299 24 chr3 90271142 90271269 -137253309 + MIR SINE MIR 99 260 -2 201 196 0 0 chr3 90271272 90271323 -137253255 + (CAT)n Simple_repeat Simple_repeat 3 53 0 321 285 40 55 chr3 90272356 90272576 -137252002 - MIR SINE MIR -40 222 8 629 323 41 5 chr3 90273871 90274091 -137250487 + MIR SINE MIR 26 253 -9 2099 121 0 14 chr3 90277921 90278218 -137246360 + AluSg SINE Alu 1 293 -17 250 135 0 0 chr3 90278405 90278442 -137246136 - L2 LINE L2 -10 3303 3267 2200 108 126 23 chr3 90279472 90279860 -137244718 - MSTA LTR MaLR 0 428 1 1244 163 21 9 chr3 90280221 90280454 -137244124 - L1PA16 LINE L1 -11 6155 5920 793 151 33 13 chr3 90280454 90280606 -137243972 + L1PA16 LINE L1 5773 5927 -239 840 251 25 4 chr3 90280875 90281114 -137243464 + L1ME1 LINE L1 5822 6065 -101 22 0 0 0 chr3 90281293 90281315 -137243263 + AT_rich Low_complexity Low_complexity 1 22 0 189 132 0 0 chr3 90283462 90283500 -137241078 + (A)n Simple_repeat Simple_repeat 1 38 0 588 224 105 41 chr3 90283520 90283739 -137240839 - MER106A DNA MER1_type -1 235 3 583 175 0 0 chr3 90283864 90283961 -137240617 + FLAM_A SINE Alu 1 97 -45 2202 151 23 0 chr3 90283964 90284314 -137240264 - THE1B LTR MaLR -6 358 1 1010 53 13 13 chr3 90284379 90284531 -137240047 + (TTTC)n Simple_repeat Simple_repeat 2 153 0 5109 106 7 8 chr3 90284545 90285300 -137239278 - L1PA11 LINE L1 -1 6173 5420 360 314 36 7 chr3 90285783 90285920 -137238658 - MIR SINE MIR -11 251 111 670 184 128 0 chr3 90288810 90288933 -137235645 + MER2 DNA MER2_type 1 139 -206 2010 133 35 32 chr3 90288933 90289271 -137235307 - MER1B DNA MER1_type 0 339 1 948 122 30 6 chr3 90289271 90289435 -137235143 + MER2 DNA MER2_type 132 299 -46 26 0 0 0 chr3 90289743 90289769 -137234809 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 90290214 90290235 -137234343 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 90290825 90290853 -137233725 + AT_rich Low_complexity Low_complexity 1 28 0 937 241 9 40 chr3 90291308 90291536 -137233042 + MER58A DNA MER1_type 1 221 -3 356 247 0 12 chr3 90291554 90291635 -137232943 + MIR SINE MIR 84 163 -99 211 255 191 11 chr3 90291651 90291745 -137232833 + MIR SINE MIR 141 251 -11 199 300 57 57 chr3 90291883 90292023 -137232555 + MIR SINE MIR 18 157 -105 738 237 65 46 chr3 90292239 90292564 -137232014 + L1ME3A LINE L1 5832 6162 -8 2241 110 3 0 chr3 90293515 90293815 -137230763 - AluSx SINE Alu -11 301 1 242 262 16 0 chr3 90298029 90298090 -137226488 - MLT1I LTR MaLR -2 407 346 1935 137 3 0 chr3 90298100 90298413 -137226165 - L1MA5A LINE L1 -4 6293 5980 2233 102 6 6 chr3 90298435 90298748 -137225830 - AluSp SINE Alu 0 313 1 585 256 88 71 chr3 90298810 90299118 -137225460 - MLT1I LTR MaLR -93 316 4 200 235 44 29 chr3 90299942 90300010 -137224568 + MIR SINE MIR 84 152 -110 216 261 14 29 chr3 90300354 90300423 -137224155 - MIR3 SINE MIR -1 207 140 416 303 98 64 chr3 90302395 90302885 -137221693 - L1M2 LINE L1 -5463 1386 720 1882 124 51 0 chr3 90302932 90303268 -137221310 - AluSx SINE Alu 0 350 1 351 297 172 43 chr3 90303498 90303707 -137220871 + MIR SINE MIR 18 253 -9 198 103 0 0 chr3 90305620 90305649 -137218929 + (A)n Simple_repeat Simple_repeat 1 29 0 21 0 0 0 chr3 90305719 90305740 -137218838 + AT_rich Low_complexity Low_complexity 1 21 0 1850 176 0 13 chr3 90306169 90306482 -137218096 + AluJo SINE Alu 1 309 -3 224 111 22 0 chr3 90308211 90308256 -137216322 + (CA)n Simple_repeat Simple_repeat 1 46 0 2605 40 0 3 chr3 90308986 90309290 -137215288 + AluY SINE Alu 1 303 -8 298 292 229 57 chr3 90310221 90310413 -137214165 - MIR SINE MIR -19 243 19 2117 120 0 40 chr3 90312256 90312581 -137211997 + AluSx SINE Alu 1 312 0 1859 162 0 0 chr3 90314725 90314996 -137209582 + AluSx SINE Alu 1 271 -41 2290 70 0 7 chr3 90316173 90316495 -137208083 - AluSx SINE Alu 0 320 1 223 89 107 0 chr3 90317061 90317117 -137207461 + (CATAA)n Simple_repeat Simple_repeat 5 66 0 186 43 0 0 chr3 90318942 90318965 -137205613 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1755 150 49 0 chr3 90319632 90319918 -137204660 + AluSx SINE Alu 5 304 -8 201 246 0 0 chr3 90320940 90321005 -137203573 + CT-rich Low_complexity Low_complexity 3 67 0 25 75 0 0 chr3 90323030 90323083 -137201495 + AT_rich Low_complexity Low_complexity 1 53 0 26 0 0 0 chr3 90324234 90324260 -137200318 + AT_rich Low_complexity Low_complexity 1 26 0 1023 210 199 0 chr3 90325416 90325697 -137198881 + MER58B DNA MER1_type 3 339 -2 33 25 0 0 chr3 90326318 90326358 -137198220 + AT_rich Low_complexity Low_complexity 1 40 0 1165 266 56 8 chr3 90327341 90327545 -137197033 - MLT1A2 LTR MaLR 0 374 144 270 0 0 0 chr3 90327545 90327575 -137197003 + (GA)n Simple_repeat Simple_repeat 1 30 0 1165 266 56 8 chr3 90327575 90327727 -137196851 - MLT1A2 LTR MaLR -230 144 1 383 310 100 61 chr3 90328406 90328716 -137195862 - L2 LINE L2 -18 3295 2974 1957 177 8 14 chr3 90328816 90329183 -137195395 + MLT1A1 LTR MaLR 1 365 0 1692 226 68 47 chr3 90329432 90329963 -137194615 - MLT1F LTR MaLR 0 542 1 1908 238 45 28 chr3 90330949 90331487 -137193091 - MLT1E2 LTR MaLR 0 626 80 312 298 33 25 chr3 90331379 90331500 -137193078 - MLT2C1 LTR ERVL -205 192 71 * 289 302 147 9 chr3 90431874 90431990 -137092588 + MIR SINE MIR 50 181 -81 2153 87 0 17 chr3 90432044 90432344 -137092234 + AluY SINE Alu 13 307 -4 234 365 53 22 chr3 90432592 90432772 -137091806 - MER5A DNA MER1_type 0 178 1 252 250 80 45 chr3 90433155 90433267 -137091311 - MIR SINE MIR -71 191 76 21 57 0 0 chr3 90435986 90436021 -137088557 + AT_rich Low_complexity Low_complexity 1 35 0 253 247 14 0 chr3 90436902 90436975 -137087603 + (TA)n Simple_repeat Simple_repeat 2 75 0 275 339 50 0 chr3 90437436 90437557 -137087021 + L2 LINE L2 3187 3313 0 186 384 0 0 chr3 90437826 90437899 -137086679 + L2 LINE L2 2596 2668 -646 2187 107 25 0 chr3 90440125 90440452 -137084126 + L1PA11 LINE L1 5840 6174 0 21 107 0 0 chr3 90440764 90440848 -137083730 + AT_rich Low_complexity Low_complexity 1 84 0 238 224 0 0 chr3 90441364 90441413 -137083165 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 31807 114 6 19 chr3 90444306 90449251 -137075327 + L1P LINE L1 11 4888 -1258 1859 88 70 0 chr3 90449351 90449623 -137074955 - LTR30 LTR ERV1 -431 291 1 3305 99 2 11 chr3 90449623 90450088 -137074490 - HERV30 LTR ERV1 0 8257 7797 * 25806 113 9 7 chr3 90450084 90453697 -137070881 - HERV30 LTR ERV1 -4636 3621 1 4451 116 27 11 chr3 90453698 90454408 -137070170 - LTR30 LTR ERV1 -1 721 1 6597 132 22 13 chr3 90454418 90455893 -137068685 + L1MA1 LINE L1 4804 6292 -10 547 299 123 34 chr3 90455928 90456036 -137068542 - L1MEd LINE L1 -4926 1279 1182 2480 65 0 3 chr3 90456036 90456345 -137068233 - AluY SINE Alu -3 308 1 547 299 123 34 chr3 90456345 90456645 -137067933 - L1MEd LINE L1 -5023 1182 853 336 48 0 0 chr3 90456797 90456839 -137067739 + (TTTC)n Simple_repeat Simple_repeat 3 44 0 630 124 0 0 chr3 90456840 90456937 -137067641 - AluS SINE Alu -216 97 1 263 278 56 21 chr3 90457367 90457511 -137067067 + LTR67 LTR ERVL 397 545 -12 213 65 0 0 chr3 90457886 90457917 -137066661 + (T)n Simple_repeat Simple_repeat 1 31 0 23 97 0 0 chr3 90458359 90458431 -137066147 + AT_rich Low_complexity Low_complexity 1 72 0 363 208 14 0 chr3 90458462 90458534 -137066044 - MLT1A1 LTR MaLR -12 353 281 21 0 0 0 chr3 90459876 90459897 -137064681 + AT_rich Low_complexity Low_complexity 1 21 0 6800 64 8 13 chr3 90460685 90462036 -137062542 - L1PA6 LINE L1 -2 6152 4798 289 277 18 0 chr3 90462504 90462616 -137061962 + (TA)n Simple_repeat Simple_repeat 2 115 0 2328 143 73 0 chr3 90463014 90463413 -137061165 + MSTA LTR MaLR 1 428 0 214 281 0 0 chr3 90464051 90464108 -137060470 - MIR SINE MIR -118 144 88 22 35 0 0 chr3 90464348 90464377 -137060201 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr3 90464741 90464766 -137059812 + AT_rich Low_complexity Low_complexity 1 25 0 1280 288 33 34 chr3 90465146 90465816 -137058762 - L1M4c LINE L1 -4685 1699 1031 775 316 86 27 chr3 90465825 90466233 -137058345 + L2 LINE L2 2880 3311 -2 22 88 0 0 chr3 90466537 90466594 -137057984 + AT_rich Low_complexity Low_complexity 1 57 0 205 370 43 0 chr3 90466616 90466708 -137057870 + MIR SINE MIR 38 133 -75 956 186 11 6 chr3 90467763 90467940 -137056638 - MER5A DNA MER1_type -1 188 11 1072 147 161 14 chr3 90468436 90468647 -137055931 + LOR1a LTR ERV1 254 495 -2 416 323 47 35 chr3 90470953 90471207 -137053371 - L1ME3A LINE L1 -87 6083 5827 376 255 35 7 chr3 90471243 90471388 -137053190 - L1MDa LINE L1 -2375 4165 4017 1368 148 35 0 chr3 90471440 90471697 -137052881 - L1MA3 LINE L1 -6 6299 6034 1780 164 130 16 chr3 90471697 90472081 -137052497 + MSTA LTR MaLR 1 428 0 1680 113 4 0 chr3 90472081 90472329 -137052249 + MSTA-int LTR MaLR 1 249 -1402 1537 161 0 15 chr3 90472356 90472629 -137051949 - L1MA3 LINE L1 -266 6039 5771 12300 230 35 32 chr3 90472630 90473467 -137051111 - L1PA16 LINE L1 -3 7601 6768 2173 117 3 0 chr3 90473467 90473766 -137050812 - AluSg SINE Alu -2 308 9 12300 230 35 32 chr3 90473766 90477743 -137046835 - L1PA16 LINE L1 -836 6768 2729 1576 204 0 10 chr3 90477743 90478042 -137046536 - AluJo SINE Alu -4 308 13 12300 230 35 32 chr3 90478042 90478589 -137045989 - L1PA16 LINE L1 -4875 2729 2185 486 224 0 0 chr3 90478826 90478924 -137045654 - L1PA16 LINE L1 -5400 2181 2084 895 315 86 52 chr3 90479046 90479636 -137044942 - L1PA16 LINE L1 -6177 1397 788 664 335 96 20 chr3 90479663 90480152 -137044426 - L1MDa LINE L1 -2591 3949 3424 2342 245 50 41 chr3 90480170 90480852 -137043726 - L1MD2 LINE L1 -17 6342 5652 1149 254 96 15 chr3 90480852 90481195 -137043383 + MLT1A2 LTR MaLR 4 374 0 2342 245 50 41 chr3 90481195 90481238 -137043340 - L1MD2 LINE L1 -707 5652 5611 1127 245 54 30 chr3 90481243 90481425 -137043153 + L1MC/D LINE L1 4946 5122 -1215 2398 90 0 3 chr3 90481425 90481736 -137042842 + AluY SINE Alu 1 310 -1 1127 245 54 30 chr3 90481736 90482188 -137042390 + L1MC/D LINE L1 5122 5594 -743 311 278 56 91 chr3 90482257 90482460 -137042118 - L1MDa LINE L1 -4440 2100 1906 1795 138 42 3 chr3 90482460 90482581 -137041997 + AluSg SINE Alu 1 116 -194 315 0 0 0 chr3 90482581 90482616 -137041962 + (CA)n Simple_repeat Simple_repeat 2 36 0 1795 138 42 3 chr3 90482616 90482783 -137041795 + AluSg SINE Alu 116 300 -10 311 278 56 91 chr3 90482783 90482831 -137041747 - L1MDa LINE L1 -4634 1906 1858 12725 151 30 9 chr3 90482899 90485065 -137039513 + L1M1 LINE L1 808 3017 -4548 11230 190 14 34 chr3 90485052 90487776 -137036802 + L1M1 LINE L1 3475 6137 -1428 * 2329 144 25 14 chr3 90487776 90488212 -137036366 - LTR30 LTR ERV1 0 722 282 23 33 0 0 chr3 90488553 90488583 -137035995 + AT_rich Low_complexity Low_complexity 1 30 0 1918 133 31 76 chr3 90488632 90488937 -137035641 - MER47A DNA MER2_type -1957 366 49 2008 156 36 25 chr3 90488937 90489297 -137035281 + THE1B LTR MaLR 1 364 0 1918 133 31 76 chr3 90489297 90489335 -137035243 - MER47A DNA MER2_type -2274 49 39 2298 94 3 0 chr3 90489335 90489632 -137034946 + AluSg1 SINE Alu 1 298 -11 1918 133 31 76 chr3 90489632 90489669 -137034909 - MER47A DNA MER2_type -2284 39 2 250 262 16 0 chr3 90490053 90490114 -137034464 + (TATATG)n Simple_repeat Simple_repeat 1 62 0 354 280 121 68 chr3 90490456 90490720 -137033858 + MER102b DNA MER1_type 25 302 -39 1991 131 109 3 chr3 90490919 90491248 -137033330 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr3 90491952 90491973 -137032605 + AT_rich Low_complexity Low_complexity 1 21 0 1380 201 98 60 chr3 90493103 90493472 -137031106 + MLT1B LTR MaLR 1 383 -7 2566 53 0 0 chr3 90493912 90494214 -137030364 - AluY SINE Alu -9 302 1 537 259 37 62 chr3 90495074 90495123 -137029455 + MER5A DNA MER1_type 1 50 -139 1898 176 21 21 chr3 90495123 90495510 -137029068 + MLT1B LTR MaLR 1 387 -3 537 259 37 62 chr3 90495510 90495622 -137028956 + MER5A DNA MER1_type 50 158 -31 4451 235 14 11 chr3 90495773 90496872 -137027706 - L1P LINE L1 -3418 2728 1627 2503 213 68 65 chr3 90497203 90497471 -137027107 + L1MC3 LINE L1 6886 7152 -633 2410 78 3 0 chr3 90497471 90497777 -137026801 - AluY SINE Alu -4 307 1 2503 213 68 65 chr3 90497777 90498199 -137026379 + L1MC3 LINE L1 7152 7582 -203 2101 126 3 3 chr3 90498199 90498509 -137026069 + AluSg SINE Alu 1 310 0 2503 213 68 65 chr3 90498509 90498714 -137025864 + L1MC3 LINE L1 7582 7785 0 237 255 0 0 chr3 90498884 90498931 -137025647 + MIR SINE MIR 69 115 -147 531 349 98 37 chr3 90499329 90499870 -137024708 - L2 LINE L2 -606 2708 2135 2274 190 11 26 chr3 90501154 90501622 -137022956 - LOR1b LTR ERV1 0 461 1 30 27 0 0 chr3 90501862 90501899 -137022679 + AT_rich Low_complexity Low_complexity 1 37 0 2350 71 0 3 chr3 90502799 90503095 -137021483 + AluY SINE Alu 1 295 -16 4479 187 131 66 chr3 90503487 90506360 -137018218 - pTR5 LTR ERV1 0 2438 168 2088 138 3 0 chr3 90507154 90507450 -137017128 + AluSx SINE Alu 1 297 -15 2334 71 7 3 chr3 90509001 90509295 -137015283 + AluSg SINE Alu 1 295 -15 217 234 31 109 chr3 90510776 90510904 -137013674 - L2 LINE L2 -72 3241 3124 459 0 0 0 chr3 90511596 90511647 -137012931 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 24 77 0 0 chr3 90511835 90511887 -137012691 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr3 90513297 90513319 -137011259 + AT_rich Low_complexity Low_complexity 1 22 0 221 296 0 57 chr3 90513324 90513412 -137011166 - MIR3 SINE MIR -15 193 111 223 397 35 9 chr3 90513520 90513636 -137010942 - MIR SINE MIR -121 141 23 4388 21 0 0 chr3 90514012 90514523 -137010055 - L1PA3 LINE L1 -1 6154 5644 835 238 105 11 chr3 90514523 90514809 -137009769 - Charlie4a DNA MER1_type -191 317 5 195 326 0 0 chr3 90515255 90515304 -137009274 + L2 LINE L2 3175 3223 -90 346 341 40 51 chr3 90515490 90515666 -137008912 - MIR3 SINE MIR -32 176 3 1104 246 102 108 chr3 90515880 90516461 -137008117 - MER21B LTR ERV1 -154 709 133 308 303 37 0 chr3 90517742 90517851 -137006727 - MIR SINE MIR -70 192 80 233 367 122 0 chr3 90519252 90519399 -137005179 + L2 LINE L2 2467 2631 -683 210 143 0 0 chr3 90519500 90519535 -137005043 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 386 363 139 12 chr3 90519708 90519983 -137004595 + L2 LINE L2 2761 3066 -247 339 62 0 0 chr3 90519993 90520041 -137004537 - MADE1 DNA Mariner -32 48 1 270 217 94 19 chr3 90520395 90520501 -137004077 - MER31-int LTR ERV1 -1379 3557 3444 5648 133 6 5 chr3 90520521 90521368 -137003210 + THE1C-int LTR MaLR 733 1580 0 2002 157 41 11 chr3 90521369 90521732 -137002846 + THE1C LTR MaLR 2 375 0 491 357 37 8 chr3 90522941 90523185 -137001393 + HERVL74 LTR ERVL 1888 2138 -3547 23 33 0 0 chr3 90523189 90523219 -137001359 + AT_rich Low_complexity Low_complexity 1 30 0 3026 156 2 0 chr3 90523340 90523833 -137000745 - L1PA16 LINE L1 -20 6146 5653 13748 223 21 17 chr3 90523849 90524595 -136999983 - L1PB2 LINE L1 -2 6206 5464 2251 108 0 3 chr3 90524595 90524892 -136999686 - AluSc SINE Alu -13 296 1 13748 223 21 17 chr3 90524892 90529168 -136995410 - L1PB2 LINE L1 -744 5464 1144 6007 172 31 10 chr3 90529174 90530219 -136994359 - L1PB2 LINE L1 -5153 1051 1 4294 121 107 122 chr3 90530219 90531643 -136992935 + pTR5 LTR ERV1 747 2438 0 2399 333 81 46 chr3 90531646 90531945 -136992633 - L1PBa LINE L1 -5267 1596 1309 1554 118 7 54 chr3 90531945 90532224 -136992354 - AluY SINE Alu 0 311 46 2399 333 81 46 chr3 90532224 90532888 -136991690 - L1PBa LINE L1 -5554 1309 599 1707 233 26 5 chr3 90532899 90533320 -136991258 - L1PBa LINE L1 -6431 432 3 5080 202 21 12 chr3 90533331 90534872 -136989706 - L1P4 LINE L1 -495 5671 4117 1303 223 148 3 chr3 90534870 90535247 -136989331 + L1P4 LINE L1 3658 4089 -2057 * 346 191 15 15 chr3 90535253 90535321 -136989257 + HERVL74 LTR ERVL 2314 2381 -3304 2310 113 30 32 chr3 90535555 90535928 -136988650 - THE1C LTR MaLR -2 373 2 694 254 52 6 chr3 90537441 90537614 -136986964 + L1PB4 LINE L1 5968 6148 -8 511 298 49 36 chr3 90537830 90538222 -136986356 - MER101 LTR ERV1 -55 419 75 303 28 0 0 chr3 90539890 90539926 -136984652 + (TG)n Simple_repeat Simple_repeat 2 37 0 27 62 0 0 chr3 90539930 90539978 -136984600 + AT_rich Low_complexity Low_complexity 1 48 0 705 309 81 44 chr3 90540710 90541238 -136983340 - LTR67 LTR ERVL -8 549 2 21 0 0 0 chr3 90542179 90542200 -136982378 + AT_rich Low_complexity Low_complexity 1 21 0 519 17 0 0 chr3 90542384 90542444 -136982134 + (TA)n Simple_repeat Simple_repeat 1 60 0 227 244 115 0 chr3 90542903 90542981 -136981597 - L1ME4a LINE L1 -56 6065 5979 480 350 59 10 chr3 90543032 90543335 -136981243 - L1ME4a LINE L1 -239 5882 5565 25 31 0 0 chr3 90543656 90543688 -136980890 + AT_rich Low_complexity Low_complexity 1 32 0 5598 222 104 19 chr3 90544376 90545836 -136978742 + MER52A LTR ERV1 1 1755 0 244 0 0 0 chr3 90547996 90548029 -136976549 - L1MA3 LINE L1 0 6305 6273 26 0 0 0 chr3 90548695 90548721 -136975857 + AT_rich Low_complexity Low_complexity 1 26 0 393 145 0 0 chr3 90550711 90550773 -136973805 - MSTD LTR MaLR 0 457 396 1213 185 22 18 chr3 90550842 90551064 -136973514 - MSTD LTR MaLR -173 223 1 5866 265 66 15 chr3 90551075 90552700 -136971878 - MSTD-int LTR MaLR -14 1721 14 1505 212 52 26 chr3 90552716 90553102 -136971476 - MSTD LTR MaLR 0 396 1 340 315 29 3 chr3 90553580 90553716 -136970862 - MER20 DNA MER1_type -17 202 64 21 36 0 0 chr3 90553832 90553860 -136970718 + AT_rich Low_complexity Low_complexity 1 28 0 342 368 26 7 chr3 90554774 90554929 -136969649 - L3 LINE CR1 -1189 388 231 35 63 0 0 chr3 90557559 90557622 -136966956 + AT_rich Low_complexity Low_complexity 1 63 0 269 304 70 63 chr3 90557962 90558120 -136966458 - MIR3 SINE MIR -3 205 47 1026 301 163 68 chr3 90559269 90559434 -136965144 + L2 LINE L2 603 751 -2563 1759 160 16 19 chr3 90559434 90559747 -136964831 - AluJo SINE Alu 0 312 1 1026 301 163 68 chr3 90559747 90561205 -136963373 + L2 LINE L2 751 2380 -934 1724 149 13 48 chr3 90561220 90561529 -136963049 - AluSx SINE Alu -14 298 1 382 377 114 27 chr3 90561806 90562209 -136962369 + L2 LINE L2 2810 3247 -25 1818 228 3 23 chr3 90562350 90562741 -136961837 - MLT1B LTR MaLR -5 385 3 293 320 105 0 chr3 90562759 90562912 -136961666 + MIR SINE MIR 36 204 -58 207 0 0 0 chr3 90562920 90562943 -136961635 + (TG)n Simple_repeat Simple_repeat 2 24 0 1969 114 0 0 chr3 90562944 90563207 -136961371 - AluY SINE Alu -15 296 34 1801 160 0 20 chr3 90563216 90563510 -136961068 - AluJb SINE Alu -24 288 1 1652 191 33 21 chr3 90564004 90564340 -136960238 - MER58B DNA MER1_type -1 340 1 21 0 0 0 chr3 90564449 90564470 -136960108 + AT_rich Low_complexity Low_complexity 1 21 0 2413 69 0 3 chr3 90564762 90565068 -136959510 + AluSc SINE Alu 1 305 -4 183 42 0 0 chr3 90565117 90565141 -136959437 + (CAA)n Simple_repeat Simple_repeat 2 25 0 593 63 0 13 chr3 90565464 90565589 -136958989 + AluSg/x SINE Alu 205 328 0 1609 254 36 31 chr3 90568141 90568617 -136955961 + MLT1D LTR MaLR 20 497 -8 23 33 0 0 chr3 90568617 90568647 -136955931 + AT_rich Low_complexity Low_complexity 1 30 0 2373 73 0 3 chr3 90569078 90569381 -136955197 + AluY SINE Alu 1 302 -9 28 48 0 0 chr3 90570586 90570628 -136953950 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr3 90570772 90570798 -136953780 + AT_rich Low_complexity Low_complexity 1 26 0 582 265 64 110 chr3 90571603 90572105 -136952473 + L2 LINE L2 2835 3313 0 628 314 95 44 chr3 90572959 90573433 -136951145 + LTR67 LTR ERVL 2 499 -58 21 71 0 0 chr3 90573469 90573511 -136951067 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr3 90573615 90573643 -136950935 + AT_rich Low_complexity Low_complexity 1 28 0 833 148 0 45 chr3 90573967 90574122 -136950456 + L1MA1 LINE L1 6139 6286 -16 294 107 60 12 chr3 90574122 90574206 -136950372 + (TA)n Simple_repeat Simple_repeat 1 88 0 29 28 0 0 chr3 90574222 90574258 -136950320 + AT_rich Low_complexity Low_complexity 1 36 0 27 62 0 0 chr3 90574417 90574465 -136950113 + AT_rich Low_complexity Low_complexity 1 48 0 21 36 0 0 chr3 90576146 90576174 -136948404 + AT_rich Low_complexity Low_complexity 1 28 0 4688 189 49 20 chr3 90576259 90576785 -136947793 - L1MA9 LINE L1 0 6312 5803 189 0 0 0 chr3 90576785 90576806 -136947772 + (CA)n Simple_repeat Simple_repeat 2 22 0 4688 189 49 20 chr3 90576806 90577459 -136947119 - L1MA9 LINE L1 -509 5803 5017 1717 145 53 12 chr3 90577458 90577796 -136946782 + L1 LINE L1 4201 4552 -1594 * 544 160 47 9 chr3 90577810 90577916 -136946662 + L1MA3 LINE L1 19 128 -7437 15310 139 30 13 chr3 90577918 90580654 -136943924 + L1MA3 LINE L1 1104 3890 -3675 11354 171 33 30 chr3 90580654 90581743 -136942835 + L1MA3 LINE L1 4102 5186 -2538 1975 144 41 22 chr3 90581743 90582110 -136942468 + THE1C LTR MaLR 2 375 0 11354 171 33 30 chr3 90582110 90584634 -136939944 + L1MA3 LINE L1 5186 7724 0 1937 206 21 45 chr3 90584658 90584781 -136939797 + L1 LINE L1 4541 4665 -1481 2134 88 48 7 chr3 90584781 90585075 -136939503 - AluSc SINE Alu -3 306 1 1937 206 21 45 chr3 90585075 90585416 -136939162 + L1 LINE L1 4665 4994 -1152 28 61 0 0 chr3 90585518 90585567 -136939011 + AT_rich Low_complexity Low_complexity 1 49 0 219 309 12 24 chr3 90585954 90586038 -136938540 + MIR3 SINE MIR 117 199 -9 21 0 0 0 chr3 90586342 90586363 -136938215 + AT_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr3 90586585 90586614 -136937964 + AT_rich Low_complexity Low_complexity 1 29 0 231 218 0 0 chr3 90589129 90589184 -136935394 + (TATG)n Simple_repeat Simple_repeat 2 56 0 25 31 0 0 chr3 90589893 90589925 -136934653 + AT_rich Low_complexity Low_complexity 1 32 0 289 313 96 0 chr3 90590114 90590229 -136934349 + L2 LINE L2 3187 3312 -1 21 0 0 0 chr3 90590318 90590339 -136934239 + AT_rich Low_complexity Low_complexity 1 21 0 779 148 7 30 chr3 90590431 90590566 -136934012 - FLAM_A SINE Alu -1 132 1 608 286 91 73 chr3 90591155 90591708 -136932870 - L2 LINE L2 0 3313 2720 192 97 0 0 chr3 90591726 90591757 -136932821 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 729 156 8 0 chr3 90591757 90591874 -136932704 - AluSq/x SINE Alu -194 118 1 1044 278 41 52 chr3 90591879 90592246 -136932332 - L2 LINE L2 -790 2524 2162 183 114 0 0 chr3 90592248 90592283 -136932295 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 303 176 29 15 chr3 90592283 90592351 -136932227 + L1MCa LINE L1 1995 2063 -4363 * 308 286 0 22 chr3 90592334 90592425 -136932153 - L1MC4 LINE L1 -1340 6702 6614 * 311 260 10 21 chr3 90592418 90592514 -136932064 - L1MC4 LINE L1 -1340 6702 6608 66 29 0 0 chr3 90592514 90592584 -136931994 + AT_rich Low_complexity Low_complexity 1 70 0 27 0 0 0 chr3 90592604 90592631 -136931947 + AT_rich Low_complexity Low_complexity 1 27 0 540 284 91 44 chr3 90693082 90693424 -136831154 - MLT1K LTR MaLR -23 565 208 2100 162 67 2 chr3 90694651 90695053 -136829525 - MSTA LTR MaLR 0 428 1 7934 104 7 3 chr3 90695203 90696691 -136827887 + L1P3 LINE L1 4221 5711 -443 12071 48 1 0 chr3 90696800 90698312 -136826266 - L1P LINE L1 -873 5273 3760 1715 197 0 0 chr3 90698677 90698987 -136825591 - AluSx SINE Alu -2 310 1 198 71 0 0 chr3 90698988 90699016 -136825562 + (T)n Simple_repeat Simple_repeat 1 28 0 273 98 0 0 chr3 90699169 90699210 -136825368 + (TG)n Simple_repeat Simple_repeat 2 42 0 1048 79 13 0 chr3 90700174 90700326 -136824252 + AluY SINE Alu 156 309 -2 762 143 8 0 chr3 90700388 90700514 -136824064 + AluJb SINE Alu 177 303 -9 1943 171 12 12 chr3 90700767 90701134 -136823444 - MLT2A2 LTR ERVL -156 297 1 655 245 0 0 chr3 90701594 90701733 -136822845 - MLT1A1 LTR MaLR -226 139 1 1809 178 29 18 chr3 90701814 90702156 -136822422 + MSTA LTR MaLR 1 346 -82 4519 56 3 30 chr3 90703751 90704358 -136820220 + LTR10C LTR ERV1 1 591 0 255 298 61 70 chr3 90705353 90705467 -136819111 + LTR33A LTR ERVL 67 179 -344 1158 273 65 29 chr3 90705893 90706278 -136818300 - MLT1F1 LTR MaLR 0 567 169 512 311 17 11 chr3 90706310 90706487 -136818091 - MLT1F1 LTR MaLR -364 178 1 4355 239 17 20 chr3 90706607 90708123 -136816455 + L1PA16 LINE L1 1879 3392 -3457 6474 190 38 21 chr3 90708135 90710581 -136813997 + L1PA16 LINE L1 4373 6860 -9 2049 161 70 25 chr3 90711133 90711634 -136812944 - MLT2A2 LTR ERVL 0 554 1 253 312 4 19 chr3 90712670 90712871 -136811707 + C-rich Low_complexity Low_complexity 1 197 0 22 80 0 0 chr3 90713906 90713956 -136810622 + AT_rich Low_complexity Low_complexity 1 50 0 27 0 0 0 chr3 90714047 90714074 -136810504 + AT_rich Low_complexity Low_complexity 1 27 0 585 309 112 13 chr3 90715323 90715556 -136809022 + MIR SINE MIR 2 257 -5 180 0 0 0 chr3 90716319 90716339 -136808239 + (TTG)n Simple_repeat Simple_repeat 2 21 0 351 113 0 0 chr3 90716964 90717017 -136807561 + (TG)n Simple_repeat Simple_repeat 2 54 0 180 135 0 0 chr3 90717112 90717149 -136807429 + (CA)n Simple_repeat Simple_repeat 2 38 0 606 224 76 88 chr3 90717514 90717976 -136806602 - MLT1G LTR MaLR 0 590 8 377 304 82 67 chr3 90718980 90719322 -136805256 + MLT1H LTR MaLR 21 367 -182 769 186 113 123 chr3 90719430 90719827 -136804751 + MSTD LTR MaLR 4 396 0 661 137 29 0 chr3 90719943 90720045 -136804533 + U6 snRNA snRNA 1 105 -2 809 135 0 21 chr3 90720048 90720189 -136804389 + L1MA2 LINE L1 6167 6304 0 488 311 144 0 chr3 90720203 90720370 -136804208 - MLT1H LTR MaLR -328 221 31 1075 264 78 38 chr3 90720412 90720837 -136803741 - L1ME3A LINE L1 -104 6135 5694 306 0 0 0 chr3 90720895 90720929 -136803649 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 2136 89 39 0 chr3 90720934 90721216 -136803362 - AluSx SINE Alu -19 293 1 1099 169 0 6 chr3 90721218 90721401 -136803177 - AluJb SINE Alu -9 303 122 787 267 71 41 chr3 90721447 90721840 -136802738 - L1ME3A LINE L1 -1746 4469 4065 343 325 53 21 chr3 90721852 90722040 -136802538 - L1ME3A LINE L1 -4278 2118 1925 503 285 53 8 chr3 90722943 90723206 -136801372 + L1ME3A LINE L1 5675 5949 -221 34 24 0 0 chr3 90723491 90723532 -136801046 + AT_rich Low_complexity Low_complexity 1 41 0 25 65 0 0 chr3 90726995 90727041 -136797537 + AT_rich Low_complexity Low_complexity 1 46 0 392 234 56 0 chr3 90729305 90729412 -136795166 + MER103 DNA DNA 10 122 -44 2333 139 22 7 chr3 90729450 90729853 -136794725 - L1PA13 LINE L1 -1 6162 5754 2051 139 3 0 chr3 90730302 90730596 -136793982 + AluSq SINE Alu 1 295 -18 23 0 0 0 chr3 90731536 90731559 -136793019 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 90732575 90732598 -136791980 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr3 90732701 90732737 -136791841 + AT_rich Low_complexity Low_complexity 1 36 0 833 247 119 69 chr3 90732963 90733493 -136791085 - MLT1H1 LTR MaLR 0 555 7 190 424 0 0 chr3 90734118 90734210 -136790368 - MIR3 SINE MIR -30 178 87 930 223 55 38 chr3 90734310 90734602 -136789976 + MER58B DNA MER1_type 45 341 0 192 195 11 35 chr3 90734650 90734737 -136789841 + CT-rich Low_complexity Low_complexity 1 85 0 419 324 116 18 chr3 90735047 90735331 -136789247 + L2 LINE L2 3001 3312 -1 1572 209 23 3 chr3 90735652 90735958 -136788620 + AluJb SINE Alu 1 312 0 796 99 58 6 chr3 90735978 90736149 -136788429 + GA-rich Low_complexity Low_complexity 1 180 0 1188 257 242 21 chr3 90736270 90737046 -136787532 - L1MC4 LINE L1 -375 7667 6635 262 123 35 0 chr3 90737398 90737455 -136787123 + (TA)n Simple_repeat Simple_repeat 2 60 0 818 17 26 17 chr3 90737663 90737780 -136786798 + (TAGA)n Simple_repeat Simple_repeat 1 118 0 22 80 0 0 chr3 90738382 90738432 -136786146 + AT_rich Low_complexity Low_complexity 1 50 0 273 98 0 0 chr3 90739657 90739698 -136784880 + (CA)n Simple_repeat Simple_repeat 2 42 0 210 167 0 0 chr3 90739851 90739880 -136784698 + A-rich Low_complexity Low_complexity 1 32 -16 2192 139 0 0 chr3 90739880 90740190 -136784388 + AluSx SINE Alu 1 310 -2 210 167 0 0 chr3 90740190 90740208 -136784370 + A-rich Low_complexity Low_complexity 31 48 0 22 88 0 0 chr3 90740519 90740576 -136784002 + AT_rich Low_complexity Low_complexity 1 57 0 365 108 231 0 chr3 90742327 90742392 -136782186 + MADE1 DNA Mariner 1 80 0 535 295 39 24 chr3 90743801 90744008 -136780570 - MIR SINE MIR 0 262 53 870 205 23 0 chr3 90744134 90744349 -136780229 + L1MC3 LINE L1 7566 7785 0 396 0 0 0 chr3 90747139 90747183 -136777395 + (CA)n Simple_repeat Simple_repeat 2 45 0 789 269 46 9 chr3 90747567 90747783 -136776795 - MER58A DNA MER1_type 0 224 1 259 226 71 36 chr3 90748204 90748288 -136776290 - MLT1H LTR MaLR 0 549 463 4086 88 0 26 chr3 90750857 90751460 -136773118 + LTR10C LTR ERV1 1 587 -4 255 298 61 70 chr3 90752459 90752573 -136772005 + LTR33A LTR ERVL 67 179 -344 1158 273 65 29 chr3 90752999 90753384 -136771194 - MLT1F1 LTR MaLR 0 567 169 575 294 17 11 chr3 90753416 90753593 -136770985 - MLT1F1 LTR MaLR -364 178 1 274 221 15 0 chr3 90753615 90753683 -136770895 - MLT1F1-int LTR MaLR -21 1714 1646 294 318 22 34 chr3 90754150 90754329 -136770249 - MLT1F1-int LTR MaLR -499 872 696 406 229 49 82 chr3 90754399 90754521 -136770057 - MLT1F LTR MaLR -420 122 5 303 158 0 0 chr3 90754662 90754716 -136769862 - MLT2C2 LTR ERVL 0 464 400 201 211 0 0 chr3 90754724 90754776 -136769802 + (TA)n Simple_repeat Simple_repeat 2 53 0 1646 127 42 35 chr3 90754825 90755108 -136769470 + THE1B LTR MaLR 2 286 -78 872 289 70 32 chr3 90755587 90755957 -136768621 - MLT1F1 LTR MaLR -15 552 169 566 294 17 11 chr3 90755989 90756166 -136768412 - MLT1F1 LTR MaLR -364 178 1 277 265 154 0 chr3 90756188 90756305 -136768273 - MLT1F1-int LTR MaLR -21 1714 1580 359 341 23 17 chr3 90756722 90756898 -136767680 - MLT1F1-int LTR MaLR -499 872 696 497 273 0 25 chr3 90756968 90757089 -136767489 - MLT1F LTR MaLR -420 122 5 352 57 0 75 chr3 90757230 90757283 -136767295 - MLT2D LTR ERVL 0 414 366 218 283 0 0 chr3 90757283 90757336 -136767242 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 1471 207 30 66 chr3 90757336 90757392 -136767186 - MLT2D LTR ERVL -40 480 424 2075 133 39 30 chr3 90757392 90757753 -136766825 + THE1B LTR MaLR 1 364 0 1471 207 30 66 chr3 90757753 90757814 -136766764 - MLT2D LTR ERVL -96 424 362 1728 185 46 8 chr3 90757814 90758165 -136766413 - MLT1A1 LTR MaLR -1 364 1 1471 207 30 66 chr3 90758165 90758444 -136766134 - MLT2D LTR ERVL -158 362 1 824 183 78 21 chr3 90759035 90759226 -136765352 - MER58A DNA MER1_type -22 202 1 194 0 0 37 chr3 90759339 90759366 -136765212 + (TAGA)n Simple_repeat Simple_repeat 4 29 0 867 211 73 69 chr3 90759925 90760214 -136764364 + MLT1E2 LTR MaLR 1 290 -215 42582 30 26 1 chr3 90760214 90766176 -136758402 + L1HS LINE L1 16 6132 -23 430 192 154 10 chr3 90767670 90767774 -136756804 + L2 LINE L2 3192 3310 -3 335 339 129 6 chr3 90767991 90768162 -136756416 - MIR SINE MIR -20 242 51 5545 140 32 6 chr3 90768452 90769424 -136755154 - HERVL LTR ERVL -7 5647 4651 1970 59 0 0 chr3 90769579 90769832 -136754746 + L1HS LINE L1 5903 6155 0 906 275 102 3 chr3 90769851 90770146 -136754432 + MLT1E2 LTR MaLR 293 616 -10 319 312 43 43 chr3 90770188 90770419 -136754159 - L1M4 LINE L1 -816 5330 5100 235 370 0 0 chr3 90770494 90770586 -136753992 + MLT-int LTR MaLR 436 527 -1208 14417 110 7 15 chr3 90770823 90777063 -136747515 - L1PA7 LINE L1 -4 6465 2 208 135 0 0 chr3 90777572 90777609 -136746969 + (T)n Simple_repeat Simple_repeat 1 37 0 456 206 20 0 chr3 90778467 90778569 -136746009 - MER103 DNA DNA -59 107 4 22 80 0 0 chr3 90778686 90778736 -136745842 + AT_rich Low_complexity Low_complexity 1 50 0 362 240 62 0 chr3 90779121 90779217 -136745361 + L1MC4 LINE L1 6624 6725 -1317 5166 109 13 7 chr3 90779720 90780545 -136744033 - L1PA11 LINE L1 0 6174 5345 180 0 0 0 chr3 90782334 90782354 -136742224 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1912 133 7 39 chr3 90783223 90783532 -136741046 + AluSq SINE Alu 1 299 -14 30 77 0 0 chr3 90783553 90783618 -136740960 + AT_rich Low_complexity Low_complexity 1 65 0 209 343 0 15 chr3 90785331 90785398 -136739180 - L2 LINE L2 -7 3265 3200 1091 142 0 0 chr3 90785584 90785739 -136738839 - FRAM SINE Alu -22 154 1 200 384 60 32 chr3 90785968 90786252 -136738326 - L2 LINE L2 -458 2856 2565 2033 95 0 28 chr3 90786651 90786934 -136737644 - AluSg1 SINE Alu 0 309 35 1522 250 73 15 chr3 90787420 90787896 -136736682 + MLT1D LTR MaLR 1 504 -1 894 228 12 78 chr3 90787899 90788165 -136736413 + MLT1D-int LTR MaLR 15 256 -1115 2262 109 0 0 chr3 90788165 90788459 -136736119 + AluSc SINE Alu 1 294 -15 894 228 12 78 chr3 90788459 90788525 -136736053 + MLT1D-int LTR MaLR 256 325 -1046 434 237 0 123 chr3 90788529 90788740 -136735838 + MLT1D-int LTR MaLR 467 651 -720 239 216 0 0 chr3 90788803 90788852 -136735726 + MLT1D-int LTR MaLR 663 711 -660 286 209 114 50 chr3 90788852 90789042 -136735536 - MLT1-int LTR MaLR -3 1730 1245 629 170 0 0 chr3 90789044 90789156 -136735422 + MLT1D LTR MaLR 392 503 -2 223 266 25 13 chr3 90789492 90789571 -136735007 + MIR SINE MIR 88 167 -95 25 0 0 0 chr3 90789663 90789688 -136734890 + AT_rich Low_complexity Low_complexity 1 25 0 2014 124 17 3 chr3 90790060 90790351 -136734227 - AluSx SINE Alu -17 295 1 21 0 0 0 chr3 90790949 90790970 -136733608 + AT_rich Low_complexity Low_complexity 1 21 0 186 167 0 0 chr3 90791080 90791116 -136733462 + (TA)n Simple_repeat Simple_repeat 1 36 0 26 50 0 0 chr3 90791259 90791299 -136733279 + AT_rich Low_complexity Low_complexity 1 40 0 22 56 0 0 chr3 90791387 90791423 -136733155 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr3 90792162 90792184 -136732394 + AT_rich Low_complexity Low_complexity 1 22 0 1952 188 69 10 chr3 90793455 90793859 -136730719 + MSTA LTR MaLR 1 428 0 21 57 0 0 chr3 90793949 90793984 -136730594 + AT_rich Low_complexity Low_complexity 1 35 0 2039 106 7 26 chr3 90794030 90794333 -136730245 + AluSc SINE Alu 1 297 -12 339 313 207 0 chr3 90794475 90794625 -136729953 + MER5A DNA MER1_type 9 189 0 1620 163 4 14 chr3 90794824 90795131 -136729447 + AluJo SINE Alu 11 314 0 1752 128 109 6 chr3 90795886 90796215 -136728363 - THE1C LTR MaLR -12 363 1 3290 73 16 9 chr3 90796457 90796898 -136727680 + MLT2A1 LTR ERVL 1 444 0 16501 78 2 2 chr3 90796898 90799143 -136725435 + HERVL-A1 LTR ERVL 1 2245 -3409 20003 86 14 1 chr3 90799153 90801948 -136722630 + HERVL-A1 LTR ERVL 2824 5654 0 2936 101 44 7 chr3 90801948 90802338 -136722240 + MLT2A1 LTR ERVL 1 410 -34 574 93 0 21 chr3 90802338 90802435 -136722143 + (TA)n Simple_repeat Simple_repeat 1 95 0 2936 101 44 7 chr3 90802435 90802472 -136722106 + MLT2A1 LTR ERVL 410 444 0 192 356 0 0 chr3 90802785 90802844 -136721734 - L2 LINE L2 -13 3259 3201 2367 103 19 32 chr3 90803995 90804364 -136720214 - THE1B LTR MaLR 0 364 1 453 145 82 101 chr3 90804535 90804694 -136719884 + MER106B DNA MER1_type 902 1057 -2 764 220 120 8 chr3 90804730 90804989 -136719589 - L1MD3 LINE L1 0 7995 7708 1057 193 29 0 chr3 90804989 90805196 -136719382 + MER20 DNA MER1_type 7 219 0 22 0 0 0 chr3 90806641 90806663 -136717915 + AT_rich Low_complexity Low_complexity 1 22 0 1736 191 0 3 chr3 90807251 90807554 -136717024 - AluJb SINE Alu -10 302 1 1168 173 100 33 chr3 90808852 90809153 -136715425 - MLT1A1 LTR MaLR -44 321 1 2436 65 3 0 chr3 90809416 90809724 -136714854 - AluY SINE Alu -1 310 2 2254 107 29 6 chr3 90810197 90810544 -136714034 + MLT2A1 LTR ERVL 1 355 -89 1807 102 0 20 chr3 90810552 90810806 -136713772 - AluSx SINE Alu -18 294 46 316 284 64 76 chr3 90810998 90811234 -136713344 + MLT1J2 LTR MaLR 1 233 -217 700 255 155 82 chr3 90811395 90811713 -136712865 - L2 LINE L2 0 3313 2961 2562 43 0 3 chr3 90811713 90812017 -136712561 + AluY SINE Alu 1 303 -8 700 255 155 82 chr3 90812017 90812086 -136712492 - L2 LINE L2 -352 2961 2898 291 194 0 60 chr3 90812412 90812479 -136712099 + MLT1J2 LTR MaLR 388 450 0 2255 147 67 2 chr3 90813645 90814047 -136710531 - MSTA LTR MaLR 0 428 1 274 316 18 18 chr3 90816855 90817026 -136707552 - MER90 LTR ERV1 0 614 444 196 333 12 24 chr3 90817971 90818055 -136706523 + MIR SINE MIR 97 179 -83 201 74 0 0 chr3 90819945 90819972 -136704606 + (T)n Simple_repeat Simple_repeat 1 27 0 267 192 57 96 chr3 90819992 90820169 -136704409 - L1ME4a LINE L1 -29 6092 5923 28 29 0 0 chr3 90820224 90820259 -136704319 + AT_rich Low_complexity Low_complexity 1 35 0 1575 181 72 6 chr3 90820269 90820589 -136703989 + MER61A LTR ERV1 3 343 0 1385 200 28 85 chr3 90821396 90821791 -136702787 + MLT2D LTR ERVL 3 374 -40 396 0 0 0 chr3 90821791 90821835 -136702743 + (CA)n Simple_repeat Simple_repeat 2 45 0 1385 200 28 85 chr3 90821835 90821864 -136702714 + MLT2D LTR ERVL 374 403 -11 846 269 86 40 chr3 90821991 90822419 -136702159 + MLT1C LTR MaLR 13 460 -7 260 273 15 0 chr3 90823077 90823143 -136701435 + LTR67 LTR ERVL 107 173 -384 294 224 127 30 chr3 90823505 90823639 -136700939 + MER103 DNA DNA 10 156 -10 202 343 22 44 chr3 90823783 90823964 -136700614 + L2 LINE L2 2688 2864 -450 886 236 61 31 chr3 90823965 90824319 -136700259 + MSTD LTR MaLR 2 396 0 191 306 0 42 chr3 90824474 90824546 -136700032 + L2 LINE L2 3015 3083 -189 24 0 0 0 chr3 90824957 90824981 -136699597 + AT_rich Low_complexity Low_complexity 1 24 0 183 80 0 0 chr3 90825957 90825982 -136698596 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 417 209 66 147 chr3 90826194 90826514 -136698064 - L2 LINE L2 -1 3312 3019 672 273 98 24 chr3 90826514 90826972 -136697606 + L2 LINE L2 2716 3190 -123 347 289 161 14 chr3 90827108 90827397 -136697181 - L2 LINE L2 -239 3074 2734 232 309 0 0 chr3 90827590 90827684 -136696894 - L1ME LINE L1 -280 5884 5791 250 339 120 30 chr3 90828328 90828561 -136696017 - L2 LINE L2 -2826 488 235 2111 124 0 0 chr3 90828922 90829212 -136695366 - AluSq SINE Alu -23 290 1 25 0 0 0 chr3 90829330 90829355 -136695223 + AT_rich Low_complexity Low_complexity 1 25 0 1100 240 43 7 chr3 90830000 90830304 -136694274 + MER39 LTR ERV1 393 707 0 30 45 0 0 chr3 90830623 90830667 -136693911 + AT_rich Low_complexity Low_complexity 1 44 0 1746 228 141 32 chr3 90830746 90831491 -136693087 - LTR1B LTR ERV1 0 826 1 226 235 20 0 chr3 90831990 90832041 -136692537 + MIR SINE MIR 159 210 -52 1483 74 15 0 chr3 90832545 90832748 -136691830 - L1PA6 LINE L1 -10 6144 5939 333 0 0 0 chr3 90833177 90833214 -136691364 + (CA)n Simple_repeat Simple_repeat 2 38 0 333 316 66 7 chr3 90833443 90833595 -136690983 + MIR SINE MIR 51 211 -51 326 321 7 43 chr3 90834764 90834904 -136689674 - MIR SINE MIR -56 206 72 198 0 0 0 chr3 90835251 90835273 -136689305 + (TTA)n Simple_repeat Simple_repeat 3 24 0 1920 43 4 0 chr3 90835273 90835508 -136689070 - L1PA4 LINE L1 -18 6137 5902 2279 15 0 0 chr3 90835508 90835779 -136688799 + L1PA4 LINE L1 5624 5894 -261 381 265 176 0 chr3 90835889 90836059 -136688519 - LTR33 LTR ERVL -47 474 275 1867 187 16 11 chr3 90836859 90837222 -136687356 + MLT1A1 LTR MaLR 1 365 0 3725 34 0 0 chr3 90837384 90837828 -136686750 - L1PA4 LINE L1 -4 6151 5708 24 32 0 0 chr3 90838104 90838135 -136686443 + AT_rich Low_complexity Low_complexity 1 31 0 260 353 0 0 chr3 90838844 90838929 -136685649 + MIR SINE MIR 64 148 -60 2182 117 0 3 chr3 90839050 90839348 -136685230 + AluSp SINE Alu 2 298 -15 281 316 13 0 chr3 90839507 90839586 -136684992 - L2 LINE L2 0 3313 3234 21 36 0 0 chr3 90841243 90841271 -136683307 + AT_rich Low_complexity Low_complexity 1 28 0 356 313 78 22 chr3 90841548 90841727 -136682851 + MER5A DNA MER1_type 1 189 0 2432 120 3 0 chr3 90841737 90842094 -136682484 - THE1B LTR MaLR -6 358 1 1976 165 17 7 chr3 90844001 90844500 -136680078 - MER34B LTR ERV1 0 565 1 22 70 0 0 chr3 90845564 90845607 -136678971 + AT_rich Low_complexity Low_complexity 1 43 0 284 214 0 0 chr3 90847995 90848051 -136676527 + MIR SINE MIR 46 101 -161 1658 123 56 95 chr3 90848311 90848701 -136675877 - THE1C LTR MaLR 0 375 1 1855 164 20 0 chr3 90848787 90849091 -136675487 + AluSx SINE Alu 2 311 -1 202 187 0 40 chr3 90849193 90849268 -136675310 + (TAA)n Simple_repeat Simple_repeat 2 73 0 825 229 41 95 chr3 90849290 90849695 -136674883 - MER34 LTR ERV1 -131 454 1 1024 194 79 18 chr3 90849714 90850043 -136674535 - Charlie1 DNA MER1_type -1 2760 2412 676 244 154 19 chr3 90850045 90850414 -136674164 + LTR37A LTR ERV1 8 426 0 454 188 10 0 chr3 90850438 90850539 -136674039 - Charlie1 DNA MER1_type -2608 153 52 198 323 65 61 chr3 90850579 90850808 -136673770 + L3 LINE CR1 1053 1282 -295 705 283 100 41 chr3 90850814 90851108 -136673470 + MLT1G1 LTR MaLR 81 413 -182 2766 174 25 81 chr3 90851108 90851839 -136672739 - LTR8 LTR ERV1 0 691 2 705 283 100 41 chr3 90851839 90852003 -136672575 + MLT1G1 LTR MaLR 413 566 -29 183 381 100 12 chr3 90852142 90852302 -136672276 - MIR3 SINE MIR -4 204 31 307 390 13 0 chr3 90852324 90852478 -136672100 + L3 LINE CR1 1421 1576 -1 26 30 0 0 chr3 90852829 90852862 -136671716 + AT_rich Low_complexity Low_complexity 1 33 0 732 286 31 24 chr3 90853089 90853344 -136671234 + MIR SINE MIR 1 257 -5 21 0 0 0 chr3 90853683 90853704 -136670874 + AT_rich Low_complexity Low_complexity 1 21 0 1854 134 113 21 chr3 90853736 90854125 -136670453 + L1PA16 LINE L1 5738 6162 -4 270 206 0 0 chr3 90856976 90857039 -136667539 + (TG)n Simple_repeat Simple_repeat 1 63 0 403 63 32 0 chr3 90857054 90857117 -136667461 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 2590 36 7 3 chr3 90857375 90857684 -136666894 + AluY SINE Alu 1 310 -1 779 143 8 0 chr3 90857746 90857872 -136666706 + AluJb SINE Alu 177 303 -9 1842 170 12 12 chr3 90858124 90858491 -136666087 - MLT2A2 LTR ERVL -156 297 1 612 245 0 0 chr3 90858951 90859090 -136665488 - MLT1A1 LTR MaLR -226 139 1 2279 174 24 16 chr3 90859171 90859596 -136664982 + MSTA LTR MaLR 1 428 0 459 371 60 11 chr3 90860502 90861173 -136663405 - MERVL LTR ERVL -634 4851 4151 585 300 70 36 chr3 90861204 90861647 -136662931 - MERVL LTR ERVL -1462 4192 3735 273 301 19 0 chr3 90861692 90861795 -136662783 - MERVL LTR ERVL -2790 2695 2591 916 374 39 17 chr3 90862281 90862929 -136661649 - MERVL LTR ERVL -3420 1576 915 2176 114 3 16 chr3 90863562 90863877 -136660701 - AluSp SINE Alu -2 311 1 222 353 17 26 chr3 90863926 90864042 -136660536 + MIR SINE MIR 124 238 -24 403 266 57 41 chr3 90864079 90864350 -136660228 + MLT1H1 LTR MaLR 3 234 -296 258 285 152 42 chr3 90865979 90866144 -136658434 - MIR3 SINE MIR -23 185 3 1790 152 7 42 chr3 90866424 90866733 -136657845 + AluSx SINE Alu 1 298 -14 6003 85 24 8 chr3 90866915 90867821 -136656757 - L1PA11 LINE L1 0 6174 5254 3389 145 22 38 chr3 90867826 90868507 -136656071 + L1PA11 LINE L1 4559 5228 -918 1665 179 150 11 chr3 90868766 90869147 -136655431 + Tigger2a DNA MER2_type 1 434 0 1865 65 4 0 chr3 90869278 90869508 -136655070 + AluY SINE Alu 76 306 -5 231 222 48 0 chr3 90869526 90869589 -136654989 + MLT1J LTR MaLR 446 511 0 199 337 72 0 chr3 90870597 90870680 -136653898 + L2 LINE L2 3221 3309 -4 237 357 20 31 chr3 90870685 90870783 -136653795 - MIR SINE MIR -87 121 25 207 0 0 0 chr3 90871448 90871471 -136653107 + (T)n Simple_repeat Simple_repeat 1 23 0 768 184 7 0 chr3 90871557 90871698 -136652880 - MLT1B LTR MaLR 0 390 249 403 213 0 0 chr3 90871746 90871821 -136652757 + MLT-int LTR MaLR 686 760 -975 467 242 115 13 chr3 90871988 90872145 -136652433 - MLT1B LTR MaLR -216 174 2 1677 237 62 134 chr3 90872147 90873168 -136651410 - MLT1B-int LTR MaLR -20 1351 405 438 200 0 73 chr3 90873160 90873270 -136651308 + MLT1-int LTR MaLR 384 485 -886 * 1499 203 9 3 chr3 90873294 90873624 -136650954 - MLT1B-int LTR MaLR -974 397 66 871 184 0 6 chr3 90873626 90873784 -136650794 + MLT1B LTR MaLR 234 390 0 837 280 4 0 chr3 90873784 90874014 -136650564 - Charlie1a DNA MER1_type -1224 231 1 2818 157 61 38 chr3 90874223 90874547 -136650031 - LTR8A LTR ERV1 0 691 376 2209 128 19 27 chr3 90874547 90874914 -136649664 + THE1B LTR MaLR 1 364 0 2818 157 61 38 chr3 90874914 90875283 -136649295 - LTR8A LTR ERV1 -315 376 1 2845 10 0 0 chr3 90877225 90877535 -136647043 - AluYb8 SINE Alu -8 310 1 268 285 8 41 chr3 90879033 90879098 -136645480 + (TA)n Simple_repeat Simple_repeat 1 62 -57 916 241 108 19 chr3 90879098 90879413 -136645165 - MER2 DNA MER2_type 0 344 2 268 285 8 41 chr3 90879413 90879470 -136645108 + (TA)n Simple_repeat Simple_repeat 62 119 0 197 179 0 36 chr3 90879637 90879693 -136644885 + (TATG)n Simple_repeat Simple_repeat 3 56 0 1788 164 3 23 chr3 90881775 90881794 -136642784 - AluJb SINE Alu -8 304 286 315 85 0 0 chr3 90881794 90881841 -136642737 + (TATG)n Simple_repeat Simple_repeat 2 48 0 1788 164 3 23 chr3 90881841 90882131 -136642447 - AluJb SINE Alu -26 286 1 195 42 0 0 chr3 90882131 90882155 -136642423 + (T)n Simple_repeat Simple_repeat 1 24 0 21 57 0 0 chr3 90889377 90889412 -136635166 + AT_rich Low_complexity Low_complexity 1 35 0 348 309 0 0 chr3 90892879 90892973 -136631605 - MIR SINE MIR -65 197 104 1212 287 129 63 chr3 90892975 90893118 -136631460 + L2 LINE L2 2244 2376 -937 2278 79 0 13 chr3 90893118 90893433 -136631145 + AluY SINE Alu 1 311 0 1212 287 129 63 chr3 90893433 90894304 -136630274 + L2 LINE L2 2376 3313 0 211 246 35 0 chr3 90894310 90894367 -136630211 - MIR SINE MIR -99 109 51 2004 142 3 13 chr3 90894403 90894714 -136629864 + AluSq SINE Alu 1 308 -5 251 191 128 78 chr3 90894986 90895127 -136629451 + MLT1J1 LTR MaLR 50 197 -249 460 252 141 7 chr3 90896316 90896451 -136628127 + MER5B DNA MER1_type 7 159 -19 873 206 18 57 chr3 90896815 90896912 -136627666 + MER58A DNA MER1_type 5 104 -2316 2091 136 0 0 chr3 90896912 90897221 -136627357 - AluSg SINE Alu -1 309 1 873 206 18 57 chr3 90897221 90897351 -136627227 + MER58A DNA MER1_type 104 223 -1 2015 150 19 14 chr3 90897353 90897678 -136626900 + MLT1A1 LTR MaLR 3 332 -33 1429 217 105 0 chr3 90897678 90897992 -136626586 - MER7A DNA MER2_type 0 346 2 2015 150 19 14 chr3 90897992 90898027 -136626551 + MLT1A1 LTR MaLR 332 365 0 1719 165 70 20 chr3 90902955 90903312 -136621266 + THE1C LTR MaLR 1 375 0 202 205 0 0 chr3 90904782 90904821 -136619757 + CT-rich Low_complexity Low_complexity 2 40 0 1864 128 0 17 chr3 90905970 90906259 -136618319 + AluSx SINE Alu 23 306 -6 392 285 139 13 chr3 90907490 90907648 -136616930 + MIR SINE MIR 31 208 -54 634 143 63 91 chr3 90907656 90907831 -136616747 - MER58C DNA MER1_type -1 214 45 2239 99 7 0 chr3 90907857 90908161 -136616417 + AluSc SINE Alu 1 306 -3 298 319 6 18 chr3 90909065 90909234 -136615344 + (CA)n Simple_repeat Simple_repeat 1 167 0 1546 203 3 10 chr3 90912165 90912482 -136612096 - AluJb SINE Alu 0 315 1 181 254 28 42 chr3 90912965 90913036 -136611542 - MIR3 SINE MIR -27 181 112 186 184 53 0 chr3 90913275 90913313 -136611265 - L2 LINE L2 -16 3256 3217 226 357 31 0 chr3 90913323 90913421 -136611157 + MER5B DNA MER1_type 77 177 -1 348 241 38 0 chr3 90913573 90913652 -136610926 - L2 LINE L2 -1 3312 3231 1666 256 59 32 chr3 90913781 90914358 -136610220 + MER77 LTR ERV1 54 617 -1 480 192 0 30 chr3 90914372 90914471 -136610107 - MIR SINE MIR -94 168 73 397 293 16 41 chr3 90914510 90914633 -136609945 + MER5B DNA MER1_type 55 174 -4 248 417 0 0 chr3 90915585 90915681 -136608897 + (CCCTAG)n Simple_repeat Simple_repeat 3 98 0 285 188 16 0 chr3 90916737 90916801 -136607777 - L1MB1 LINE L1 -1 6167 6103 244 398 47 35 chr3 90917407 90917663 -136606915 + L2 LINE L2 2992 3250 -22 186 379 11 23 chr3 90917691 90917778 -136606800 + L2 LINE L2 2236 2321 -993 3378 169 35 0 chr3 90917813 90918445 -136606133 + L1MC1 LINE L1 5680 6333 0 22 0 0 0 chr3 90920145 90920167 -136604411 + AT_rich Low_complexity Low_complexity 1 22 0 2357 83 0 22 chr3 90920406 90920720 -136603858 - AluY SINE Alu -4 307 1 261 57 0 0 chr3 90922393 90922428 -136602150 + (T)n Simple_repeat Simple_repeat 1 35 0 222 91 0 0 chr3 90922765 90922798 -136601780 + (TG)n Simple_repeat Simple_repeat 2 34 0 43 56 0 0 chr3 90923099 90923170 -136601408 + AT_rich Low_complexity Low_complexity 1 71 0 297 109 0 0 chr3 90923341 90923387 -136601191 + (TA)n Simple_repeat Simple_repeat 1 46 0 227 176 20 20 chr3 90924061 90924112 -136600466 + (TA)n Simple_repeat Simple_repeat 2 52 0 300 339 175 0 chr3 90926728 90926911 -136597667 + MIR SINE MIR 45 259 -3 227 245 112 51 chr3 90927355 90927453 -136597125 - MIR SINE MIR -115 147 44 200 33 0 33 chr3 90927936 90927966 -136596612 + (TA)n Simple_repeat Simple_repeat 2 30 0 1368 146 9 0 chr3 90927967 90928179 -136596399 - AluJb SINE Alu -15 297 84 263 280 67 0 chr3 90929321 90929396 -136595182 - MIR3 SINE MIR -18 190 111 548 72 0 12 chr3 90930414 90930497 -136594081 + (TGG)n Simple_repeat Simple_repeat 1 82 0 413 342 46 19 chr3 90932793 90933100 -136591478 + MER102b DNA MER1_type 27 341 0 209 409 39 24 chr3 90933200 90933327 -136591251 + L2 LINE L2 3117 3245 -27 188 35 35 0 chr3 90933472 90933501 -136591077 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 2028 21 0 0 chr3 90933501 90933737 -136590841 - L1PA4 LINE L1 -16 6139 5904 311 301 89 16 chr3 90933867 90933990 -136590588 + MIR SINE MIR 119 250 -12 235 221 0 15 chr3 90934601 90934669 -136589909 + L1MC4 LINE L1 6634 6700 -1342 26 30 0 0 chr3 90934669 90934702 -136589876 + AT_rich Low_complexity Low_complexity 1 33 0 227 273 15 0 chr3 90934702 90934768 -136589810 - MIR SINE MIR -58 204 138 318 340 75 46 chr3 90935072 90935313 -136589265 + L2 LINE L2 2603 2850 -464 282 29 0 0 chr3 90935812 90935847 -136588731 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 384 293 19 19 chr3 90935940 90936046 -136588532 + L2 LINE L2 3207 3312 -1 21 0 0 0 chr3 90936134 90936155 -136588423 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 90937916 90937937 -136586641 + AT_rich Low_complexity Low_complexity 1 21 0 668 277 106 4 chr3 90938800 90939035 -136585543 - MER46C DNA MER2_type 0 338 80 2158 106 0 7 chr3 90940290 90940583 -136583995 + AluSg SINE Alu 1 291 -19 21 0 0 0 chr3 90940583 90940604 -136583974 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr3 90940704 90940738 -136583840 + AT_rich Low_complexity Low_complexity 1 34 0 249 250 0 0 chr3 90943572 90943632 -136580946 + CT-rich Low_complexity Low_complexity 3 62 0 180 111 0 0 chr3 90943892 90943919 -136580659 + (TG)n Simple_repeat Simple_repeat 2 28 0 204 191 79 101 chr3 90945412 90945501 -136579077 + MIR SINE MIR 2 88 -174 757 357 37 10 chr3 90945735 90946144 -136578434 + MLT1J2 LTR MaLR 21 440 -10 46 45 0 0 chr3 90946252 90946319 -136578259 + AT_rich Low_complexity Low_complexity 1 67 0 212 83 0 28 chr3 90948150 90948186 -136576392 + (TA)n Simple_repeat Simple_repeat 1 35 0 232 174 0 0 chr3 90948196 90948242 -136576336 - LTR66 LTR ERVL -171 439 394 402 349 20 32 chr3 90948749 90949093 -136575485 + L1ME LINE L1 101 440 -5630 384 293 41 31 chr3 90949385 90949686 -136574892 + L1ME LINE L1 642 906 -5164 358 334 94 42 chr3 90949685 90949961 -136574617 + L1ME1 LINE L1 37 332 -6064 * 2101 99 6 43 chr3 90949961 90950285 -136574293 - AluSx SINE Alu 0 312 1 358 334 94 42 chr3 90950285 90950316 -136574262 + L1ME1 LINE L1 332 360 -6036 389 232 114 34 chr3 90950495 90950758 -136573820 + L1ME1 LINE L1 2040 2323 -4073 1343 140 77 0 chr3 90950759 90950981 -136573597 + AluSx SINE Alu 1 239 -73 1414 251 80 23 chr3 90950981 90951645 -136572933 + L1ME1 LINE L1 2284 2985 -3230 1692 223 138 14 chr3 90951686 90952523 -136572055 + L1ME1 LINE L1 5062 6012 -223 22 80 0 0 chr3 90954744 90954794 -136569784 + AT_rich Low_complexity Low_complexity 1 50 0 373 317 164 19 chr3 90955884 90956092 -136568486 - MIR SINE MIR -4 258 21 331 272 9 35 chr3 90959095 90959209 -136565369 - L2 LINE L2 -2 3311 3201 27 0 0 0 chr3 90959889 90959916 -136564662 + AT_rich Low_complexity Low_complexity 1 27 0 309 26 0 0 chr3 90960471 90960509 -136564069 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 0 0 0 chr3 90961483 90961504 -136563074 + AT_rich Low_complexity Low_complexity 1 21 0 282 365 81 14 chr3 90962628 90962776 -136561802 - L2 LINE L2 0 3272 3115 185 316 63 13 chr3 90962753 90962832 -136561746 - L2 LINE L2 -37 3235 3153 * 22 70 0 0 chr3 90963275 90963318 -136561260 + AT_rich Low_complexity Low_complexity 1 43 0 380 233 9 43 chr3 90963383 90963499 -136561079 + L1MB7 LINE L1 4653 4764 -1382 * 473 196 31 0 chr3 90963495 90963592 -136560986 + L1MB7 LINE L1 5210 5309 -837 3627 198 53 28 chr3 90963595 90964486 -136560092 + L1MB7 LINE L1 5263 6175 -9 22 56 0 0 chr3 90964861 90964897 -136559681 + AT_rich Low_complexity Low_complexity 1 36 0 612 211 139 0 chr3 90967454 90967620 -136556958 - MER5A DNA MER1_type 0 189 1 189 0 0 0 chr3 90968286 90968307 -136556271 + (CA)n Simple_repeat Simple_repeat 2 22 0 2186 98 3 17 chr3 90971026 90971322 -136553256 - AluSp SINE Alu -21 292 1 24 32 0 0 chr3 90973319 90973350 -136551228 + AT_rich Low_complexity Low_complexity 1 31 0 1916 269 78 11 chr3 90973817 90974356 -136550222 + MLT1E LTR MaLR 19 593 0 12512 147 44 5 chr3 90977812 90980124 -136544454 - Tigger1 DNA MER2_type 0 2418 24 238 239 30 15 chr3 90983120 90983187 -136541391 + MIR SINE MIR 86 153 -109 255 203 0 0 chr3 90984847 90984916 -136539662 + CT-rich Low_complexity Low_complexity 2 70 0 289 326 116 0 chr3 90985862 90986009 -136538569 - MIR3 SINE MIR -3 205 42 279 136 0 0 chr3 90986491 90986550 -136538028 + (A)n Simple_repeat Simple_repeat 1 59 0 342 45 0 0 chr3 90986762 90986806 -136537772 + (TG)n Simple_repeat Simple_repeat 2 45 0 731 168 11 11 chr3 90988729 90988908 -136535670 + (TG)n Simple_repeat Simple_repeat 2 180 0 237 139 0 0 chr3 90988919 90988962 -136535616 + (TG)n Simple_repeat Simple_repeat 2 44 0 201 313 47 0 chr3 90990035 90990099 -136534479 - MIR SINE MIR -6 256 190 216 328 32 48 chr3 90993746 90993871 -136530707 - L2 LINE L2 -221 3051 2929 21 36 0 0 chr3 90994501 90994529 -136530049 + AT_rich Low_complexity Low_complexity 1 28 0 332 307 65 13 chr3 90995987 90996140 -136528438 - MIR SINE MIR -3 259 99 1548 101 0 24 chr3 90996167 90996415 -136528163 - L1PA10 LINE L1 -18 6150 5909 207 316 68 8 chr3 90996750 90996867 -136527711 + L2 LINE L2 2717 2840 -474 1943 111 3 23 chr3 90997679 90997985 -136526593 + AluSx SINE Alu 1 300 -12 24 0 0 0 chr3 90998159 90998183 -136526395 + AT_rich Low_complexity Low_complexity 1 24 0 2454 51 3 0 chr3 90998423 90998719 -136525859 + AluY SINE Alu 1 297 -14 2372 102 34 3 chr3 90998898 90999251 -136525327 + THE1B LTR MaLR 1 364 0 440 208 9 0 chr3 91000414 91000520 -136524058 + GA-rich Low_complexity Low_complexity 2 108 0 25 51 0 0 chr3 91001218 91001257 -136523321 + AT_rich Low_complexity Low_complexity 1 39 0 216 97 0 0 chr3 91001671 91001702 -136522876 + (A)n Simple_repeat Simple_repeat 1 31 0 196 371 48 8 chr3 91002001 91002125 -136522453 - L2 LINE L2 -13 3300 3172 21 36 0 0 chr3 91002221 91002249 -136522329 + AT_rich Low_complexity Low_complexity 1 28 0 25 99 0 0 chr3 91002509 91002590 -136521988 + AT_rich Low_complexity Low_complexity 1 81 0 1045 283 84 27 chr3 91003101 91003588 -136520990 + MLT1E3 LTR MaLR 110 624 0 190 200 33 83 chr3 91003688 91003748 -136520830 + L2 LINE L2 3200 3256 -16 21 89 0 0 chr3 91004151 91004207 -136520371 + AT_rich Low_complexity Low_complexity 1 56 0 310 295 75 70 chr3 91004250 91004677 -136519901 + HAL1b LINE L1 60 488 -860 25 0 0 0 chr3 91005525 91005550 -136519028 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3 91007686 91007709 -136516869 + AT_rich Low_complexity Low_complexity 1 23 0 262 286 55 11 chr3 91008246 91008337 -136516241 - MIR SINE MIR -79 183 89 215 233 0 0 chr3 91008636 91008679 -136515899 + (TTCA)n Simple_repeat Simple_repeat 1 43 0 21 82 0 0 chr3 91011132 91011181 -136513397 + AT_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr3 91011316 91011348 -136513230 + AT_rich Low_complexity Low_complexity 1 32 0 21 57 0 0 chr3 91013775 91013810 -136510768 + AT_rich Low_complexity Low_complexity 1 35 0 227 325 0 26 chr3 91015508 91015585 -136508993 + L2 LINE L2 3207 3281 -32 681 287 68 13 chr3 91015593 91015830 -136508748 + MIR SINE MIR 13 262 0 218 340 31 49 chr3 91016198 91016360 -136508218 + MIR3 SINE MIR 50 208 0 353 350 92 0 chr3 91016500 91016620 -136507958 - MIR3 SINE MIR -64 144 14 1564 124 3 7 chr3 91016866 91017548 -136507030 + L1PA16 LINE L1 5406 6165 -1 188 286 0 0 chr3 91018071 91018113 -136506465 + L2 LINE L2 3209 3250 -22 416 316 183 24 chr3 91018573 91018912 -136505666 - L3 LINE CR1 -1 1576 1184 395 281 11 0 chr3 91018920 91019009 -136505569 - Tigger7 DNA MER2_type 0 2587 2498 * 1410 203 17 33 chr3 91018991 91019292 -136505286 - Tigger7 DNA MER2_type -437 296 1 507 317 102 88 chr3 91019361 91019967 -136504611 + L2 LINE L2 2703 3304 -9 283 258 16 0 chr3 91020672 91020734 -136503844 + MER2 DNA MER2_type 280 342 -3 505 292 153 0 chr3 91021157 91021373 -136503205 + MIR SINE MIR 12 260 -2 463 339 30 12 chr3 91021681 91021849 -136502729 - MIR3 SINE MIR -4 204 34 367 332 81 19 chr3 91022955 91023166 -136501412 + MIR SINE MIR 37 260 -2 2141 105 7 0 chr3 91023393 91023688 -136500890 + AluSg SINE Alu 1 297 -13 27 29 0 0 chr3 91023767 91023801 -136500777 + AT_rich Low_complexity Low_complexity 1 34 0 199 308 0 0 chr3 91024051 91024103 -136500475 - MIR SINE MIR -146 116 65 21 0 0 0 chr3 91027124 91027145 -136497433 + AT_rich Low_complexity Low_complexity 1 21 0 1637 219 51 58 chr3 91027558 91028089 -136496489 + L1MD3 LINE L1 7467 7993 -2 2082 127 7 3 chr3 91028737 91029045 -136495533 - AluSx SINE Alu -3 309 1 24 32 0 0 chr3 91029045 91029076 -136495502 + AT_rich Low_complexity Low_complexity 1 31 0 389 367 30 15 chr3 91032209 91032408 -136492170 - L2 LINE L2 -455 2859 2658 195 146 0 0 chr3 91032621 91032662 -136491916 + (TG)n Simple_repeat Simple_repeat 2 42 0 2311 54 34 0 chr3 91032949 91033245 -136491333 + AluY SINE Alu 1 306 -5 343 252 19 39 chr3 91035985 91036088 -136488490 + L2 LINE L2 3196 3296 -17 260 343 9 0 chr3 91036366 91036474 -136488104 + HAL1 LINE L1 787 895 -1612 6006 97 30 3 chr3 91036593 91037564 -136487014 + L1PA10 LINE L1 5170 6167 -1 248 206 0 14 chr3 91037603 91037676 -136486902 + HAL1 LINE L1 988 1059 -1448 1162 266 106 62 chr3 91037766 91038772 -136485806 + HAL1 LINE L1 1324 2374 -133 426 20 0 0 chr3 91038795 91038846 -136485732 + (TG)n Simple_repeat Simple_repeat 2 52 0 62 58 0 0 chr3 91039553 91039657 -136484921 + AT_rich Low_complexity Low_complexity 1 104 0 204 217 0 0 chr3 91041215 91041261 -136483317 + (CATATA)n Simple_repeat Simple_repeat 3 48 0 25 31 0 0 chr3 91042083 91042115 -136482463 + AT_rich Low_complexity Low_complexity 1 32 0 227 173 0 39 chr3 91042261 91042313 -136482265 + A-rich Low_complexity Low_complexity 2 51 0 267 356 67 0 chr3 91042643 91042747 -136481831 - L2 LINE L2 -8 3305 3195 359 266 100 70 chr3 91043315 91043544 -136481034 + MLT1H LTR MaLR 96 331 -218 3009 182 117 14 chr3 91043767 91044490 -136480088 + LTR48 LTR ERV1 1 644 0 2126 92 30 3 chr3 91045223 91045518 -136479060 + AluSc SINE Alu 1 303 -6 244 235 127 69 chr3 91046086 91046305 -136478273 + L1MC4a LINE L1 5728 5962 -159 402 85 0 0 chr3 91046943 91047002 -136477576 + (CA)n Simple_repeat Simple_repeat 2 60 0 342 0 0 0 chr3 91048657 91048695 -136475883 + (TG)n Simple_repeat Simple_repeat 2 39 0 302 116 59 0 chr3 91048859 91048928 -136475650 - L1P4 LINE L1 -551 5614 5538 2064 220 110 22 chr3 91048930 91049483 -136475095 - LTR48B LTR ERV1 0 644 34 1924 192 43 96 chr3 91049483 91049597 -136474981 + LTR9 LTR ERV1 1 119 -493 2394 58 19 10 chr3 91049597 91049905 -136474673 + AluY SINE Alu 1 311 0 1924 192 43 96 chr3 91049905 91050436 -136474142 + LTR9 LTR ERV1 119 612 0 2064 220 110 22 chr3 91050436 91050474 -136474104 - LTR48B LTR ERV1 -610 34 1 423 195 37 0 chr3 91050475 91050557 -136474021 - L1M2 LINE L1 -755 5536 5452 215 274 32 63 chr3 91050941 91051036 -136473542 - L2 LINE L2 -8 3264 3173 484 288 21 21 chr3 91051056 91051229 -136473349 + MLT1F1 LTR MaLR 25 197 -370 243 180 66 16 chr3 91051239 91051300 -136473278 + MER39 LTR ERV1 3 66 -578 1240 229 49 8 chr3 91051327 91051721 -136472857 + LTR48 LTR ERV1 141 745 -42 366 254 154 35 chr3 91051754 91051897 -136472681 + MLT1E LTR MaLR 168 345 -247 281 170 0 0 chr3 91051914 91051961 -136472617 + MLT1E LTR MaLR 494 540 -2 212 320 90 20 chr3 91052759 91052859 -136471719 - MIR SINE MIR -1 261 155 270 411 81 0 chr3 91052938 91053123 -136471455 + L2 LINE L2 2553 2752 -562 204 97 0 0 chr3 91053851 91053882 -136470696 + (CCA)n Simple_repeat Simple_repeat 1 31 0 234 245 230 29 chr3 91054061 91054200 -136470378 + MLT1L LTR MaLR 447 613 -2 487 40 13 27 chr3 91055688 91055763 -136468815 + (TAGA)n Simple_repeat Simple_repeat 4 77 0 22 56 0 0 chr3 91056104 91056140 -136468438 + AT_rich Low_complexity Low_complexity 1 36 0 267 282 26 0 chr3 91058676 91058754 -136465824 + MER94 DNA DNA 3 82 -52 217 374 35 50 chr3 91058801 91058999 -136465579 + L2 LINE L2 2804 2998 -274 200 200 0 0 chr3 91059018 91059058 -136465520 - L2 LINE L2 -7 3306 3267 295 309 45 108 chr3 91059062 91059285 -136465293 + MIR SINE MIR 2 210 -52 1868 153 0 7 chr3 91059459 91059779 -136464799 + AluJb SINE Alu 4 321 0 2101 99 10 0 chr3 91061313 91061605 -136462973 + AluSx SINE Alu 1 295 -17 34 24 0 0 chr3 91061685 91061726 -136462852 + AT_rich Low_complexity Low_complexity 1 41 0 967 315 113 51 chr3 91062711 91063933 -136460645 + L2 LINE L2 2005 3313 0 242 326 222 28 chr3 91064341 91064485 -136460093 - MIR SINE MIR -73 189 18 541 304 49 10 chr3 91065125 91065328 -136459250 + MIR SINE MIR 34 243 -19 32 43 0 0 chr3 91065481 91065527 -136459051 + AT_rich Low_complexity Low_complexity 1 46 0 2026 106 21 0 chr3 91067608 91067892 -136456686 + AluSc SINE Alu 1 290 -19 249 292 31 0 chr3 91069790 91069855 -136454723 + MIR3 SINE MIR 131 197 -11 260 329 112 13 chr3 91070225 91070377 -136454201 - L2 LINE L2 -980 2334 2168 22 0 0 0 chr3 91071517 91071539 -136453039 + AT_rich Low_complexity Low_complexity 1 22 0 223 386 16 16 chr3 91071938 91072065 -136452513 - MIR SINE MIR -63 145 19 28 29 0 0 chr3 91073783 91073818 -136450760 + AT_rich Low_complexity Low_complexity 1 35 0 221 306 16 0 chr3 91076125 91076187 -136448391 + L2 LINE L2 3204 3266 -6 424 231 83 8 chr3 91076286 91076407 -136448171 + MIR SINE MIR 122 251 -11 264 362 75 23 chr3 91076584 91076758 -136447820 + L2 LINE L2 946 1128 -2186 395 277 14 28 chr3 91077073 91077214 -136447364 + L2 LINE L2 3175 3313 0 448 224 129 85 chr3 91077614 91077815 -136446763 + MER34B LTR ERV1 22 231 -334 868 212 75 4 chr3 91077860 91078086 -136446492 + MER34B LTR ERV1 324 565 0 24 32 0 0 chr3 91078163 91078194 -136446384 + AT_rich Low_complexity Low_complexity 1 31 0 276 207 27 18 chr3 91078478 91078589 -136445989 + (TA)n Simple_repeat Simple_repeat 1 112 0 43 85 0 0 chr3 91078614 91078720 -136445858 + AT_rich Low_complexity Low_complexity 1 106 0 1052 162 13 57 chr3 91080612 91080841 -136443737 - MER20 DNA MER1_type 0 219 1 309 307 119 41 chr3 91081200 91081418 -136443160 + MIR SINE MIR 22 256 -6 353 294 0 10 chr3 91081525 91081627 -136442951 + MIR SINE MIR 112 212 -50 556 251 23 12 chr3 91081647 91081818 -136442760 + MER104 DNA Tc2 1 173 -7 1147 98 93 21 chr3 91082429 91082622 -136441956 + L1MA1 LINE L1 6090 6296 -6 39 0 0 0 chr3 91082622 91082661 -136441917 + AT_rich Low_complexity Low_complexity 1 39 0 2333 43 4 0 chr3 91082661 91082985 -136441593 + AluY SINE Alu 1 325 0 21 36 0 0 chr3 91083152 91083180 -136441398 + AT_rich Low_complexity Low_complexity 1 28 0 321 68 0 0 chr3 91184750 91184794 -136339784 + (GA)n Simple_repeat Simple_repeat 1 44 0 335 162 0 29 chr3 91186883 91186951 -136337627 + Alu SINE Alu 236 301 -1 4322 72 12 0 chr3 91187018 91187601 -136336977 - L1P LINE L1 -1707 4439 3850 330 132 0 0 chr3 91187710 91187763 -136336815 + (A)n Simple_repeat Simple_repeat 1 53 0 24 0 0 0 chr3 91188104 91188128 -136336450 + AT_rich Low_complexity Low_complexity 1 24 0 39 0 0 0 chr3 91188344 91188383 -136336195 + AT_rich Low_complexity Low_complexity 1 39 0 236 297 29 6 chr3 91189348 91189523 -136335055 + (TA)n Simple_repeat Simple_repeat 2 180 0 23 0 0 0 chr3 91190188 91190211 -136334367 + AT_rich Low_complexity Low_complexity 1 23 0 229 206 98 43 chr3 91191032 91191124 -136333454 + MARNA DNA Mariner 8 104 -482 * 267 241 84 0 chr3 91191044 91191127 -136333451 - MARNA DNA Mariner -19 567 478 33 66 0 0 chr3 91191487 91191548 -136333030 + AT_rich Low_complexity Low_complexity 1 61 0 653 248 61 104 chr3 91191621 91192065 -136332513 - L1MC5 LINE L1 -516 7445 7021 403 237 15 0 chr3 91192336 91192471 -136332107 + (TA)n Simple_repeat Simple_repeat 2 138 0 13956 102 6 18 chr3 91193279 91194561 -136330017 - L1P LINE L1 -2327 3819 2570 2116 128 0 3 chr3 91194561 91194859 -136329719 - AluSc SINE Alu -12 297 1 13956 102 6 18 chr3 91194859 91195708 -136328870 - L1P LINE L1 -3576 2570 1713 2542 113 24 8 chr3 91196217 91196599 -136327979 - L1PA11 LINE L1 0 6174 5787 2123 223 12 78 chr3 91197826 91198598 -136325980 - L1 LINE L1 -2439 3707 2987 1553 142 8 0 chr3 91198598 91198837 -136325741 - MSTA LTR MaLR 0 428 188 13304 201 63 25 chr3 91198857 91203007 -136321571 + L1MA2 LINE L1 20 4477 -3088 6701 139 11 4 chr3 91203026 91204508 -136320070 - L1MA1 LINE L1 0 6302 4809 5789 187 24 13 chr3 91204511 91205779 -136318799 + L1MA2 LINE L1 4485 5765 -1800 6312 156 11 5 chr3 91205782 91207141 -136317437 + L1MA2 LINE L1 6359 7723 0 633 262 19 53 chr3 91207145 91207524 -136317054 - L1 LINE L1 -3785 3063 2700 1511 311 33 55 chr3 91207539 91208437 -136316141 - L1PA15-16 LINE L1 -5948 901 23 24 96 0 0 chr3 91208589 91208662 -136315916 + AT_rich Low_complexity Low_complexity 1 73 0 5096 159 18 77 chr3 91208664 91208974 -136315604 - L1MC1 LINE L1 -2 6331 6004 2351 83 0 0 chr3 91208974 91209274 -136315304 + AluY SINE Alu 1 300 -11 5096 159 18 77 chr3 91209274 91210056 -136314522 - L1MC1 LINE L1 -329 6004 5345 572 244 15 15 chr3 91210056 91210187 -136314391 - FLAM_A SINE Alu -1 132 2 5096 159 18 77 chr3 91210187 91210524 -136314054 - L1MC1 LINE L1 -988 5345 4990 678 182 34 14 chr3 91210528 91210676 -136313902 + MLT1A1 LTR MaLR 1 151 -214 311 0 26 0 chr3 91210677 91210716 -136313862 + (TC)n Simple_repeat Simple_repeat 1 40 0 286 162 6 6 chr3 91212728 91212890 -136311688 + AluSx SINE Alu 49 302 0 595 283 135 21 chr3 91213124 91213569 -136311009 + MLT1H1 LTR MaLR 15 590 0 605 316 117 29 chr3 91213574 91214017 -136310561 + HAL1b LINE L1 331 812 -536 576 203 49 0 chr3 91214064 91214187 -136310391 - L1MA9 LINE L1 -38 6274 6146 1579 147 78 25 chr3 91214188 91214508 -136310070 + LTR7 LTR ERV1 1 337 -113 20784 124 20 29 chr3 91214518 91218421 -136306157 + HERVH LTR ERV1 1 3993 -3720 8046 130 4 5 chr3 91218404 91219643 -136304935 + HERVH LTR ERV1 3995 5317 -1774 * 2468 136 7 25 chr3 91219634 91220069 -136304509 + HERVH LTR ERV1 5590 6016 -1697 * 3718 99 14 13 chr3 91220062 91220618 -136303960 + HERVH LTR ERV1 7157 7713 0 2347 137 56 19 chr3 91220618 91221050 -136303528 + LTR7 LTR ERV1 1 448 -2 1857 252 20 87 chr3 91221051 91221532 -136303046 - L1MB1 LINE L1 -12 6360 5959 1492 217 0 20 chr3 91221532 91221836 -136302742 - AluJo SINE Alu -14 298 1 1857 252 20 87 chr3 91221836 91222202 -136302376 - L1MB1 LINE L1 -413 5959 5570 2395 208 111 39 chr3 91222223 91222950 -136301628 - L1MB1 LINE L1 -768 5582 4803 2378 285 39 76 chr3 91223065 91223353 -136301225 - L1MB1 LINE L1 -4175 2176 1879 2039 186 60 12 chr3 91223353 91223756 -136300822 + MSTB LTR MaLR 5 426 0 8065 193 14 30 chr3 91223756 91225435 -136299143 + MSTB-int LTR MaLR 1 1651 0 2228 170 54 5 chr3 91225435 91225841 -136298737 + MSTB LTR MaLR 1 426 0 2378 285 39 76 chr3 91225841 91226659 -136297919 - L1MB1 LINE L1 -4470 1881 1160 187 30 30 30 chr3 91226659 91226692 -136297886 + (TTTTG)n Simple_repeat Simple_repeat 4 36 0 2378 285 39 76 chr3 91226692 91227222 -136297356 - L1MB1 LINE L1 -5191 1160 612 1989 218 12 57 chr3 91227319 91227811 -136296767 - MER70A LTR ERVL 0 472 3 5883 159 16 4 chr3 91227886 91229067 -136295511 - L1MA3 LINE L1 -1 6304 5107 2453 170 31 6 chr3 91229064 91229552 -136295026 - L1MA3 LINE L1 -1722 4424 3925 * 2405 195 38 5 chr3 91229557 91230136 -136294442 - L1MA3 LINE L1 -2699 3447 2850 2291 162 31 14 chr3 91231014 91231433 -136293145 + MSTB LTR MaLR 1 426 0 8279 197 13 17 chr3 91231433 91231762 -136292816 + MSTB-int LTR MaLR 1 330 -1321 1977 97 4 0 chr3 91231762 91232019 -136292559 + AluY SINE Alu 46 303 -8 8279 197 13 17 chr3 91232019 91233268 -136291310 + MSTB-int LTR MaLR 330 1574 -77 2220 116 0 3 chr3 91233268 91233561 -136291017 + AluSg SINE Alu 3 294 -16 8279 197 13 17 chr3 91233561 91233639 -136290939 + MSTB-int LTR MaLR 1574 1651 0 2217 172 29 17 chr3 91233639 91234058 -136290520 + MSTB LTR MaLR 1 424 -2 184 342 63 13 chr3 91234209 91234288 -136290290 + MIR3 SINE MIR 73 155 -53 * 324 182 63 0 chr3 91234250 91234332 -136290246 - MIR3 SINE MIR -51 157 63 823 255 4 51 chr3 91234349 91234584 -136289994 + MER58A DNA MER1_type 1 224 0 1466 180 3 34 chr3 91235710 91235934 -136288644 + MER49 LTR ERV1 1 230 -693 2013 138 78 0 chr3 91235934 91236282 -136288296 - THE1C LTR MaLR 0 375 1 9850 127 35 7 chr3 91236282 91237819 -136286759 - THE1C-int LTR MaLR 0 1580 1 2188 133 33 16 chr3 91237819 91238186 -136286392 - THE1C LTR MaLR 0 375 3 1466 180 3 34 chr3 91238186 91238253 -136286325 + MER49 LTR ERV1 227 285 -638 1473 236 23 14 chr3 91238321 91238673 -136285905 + MER4D LTR ERV1 549 903 0 365 239 114 38 chr3 91238967 91239120 -136285458 + MLT1D LTR MaLR 320 473 -8 24 53 0 0 chr3 91240643 91240681 -136283897 + AT_rich Low_complexity Low_complexity 1 38 0 225 0 0 0 chr3 91241082 91241109 -136283469 + L1PA6 LINE L1 6118 6144 -10 240 35 0 0 chr3 91241109 91241138 -136283440 + (TA)n Simple_repeat Simple_repeat 2 30 0 2355 54 7 7 chr3 91241490 91241788 -136282790 + AluY SINE Alu 1 298 -13 21 57 0 0 chr3 91243438 91243473 -136281105 + AT_rich Low_complexity Low_complexity 1 35 0 27 49 0 0 chr3 91244203 91244244 -136280334 + AT_rich Low_complexity Low_complexity 1 41 0 216 0 0 0 chr3 91244495 91244519 -136280059 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 371 299 61 35 chr3 91246361 91246558 -136278020 + L1MC4a LINE L1 5725 5926 -1882 289 346 20 0 chr3 91247976 91248077 -136276501 - MIR SINE MIR 0 262 160 40 73 0 0 chr3 91248077 91248159 -136276419 + AT_rich Low_complexity Low_complexity 1 82 0 2227 95 10 0 chr3 91248223 91248517 -136276061 + AluSx SINE Alu 1 297 -15 680 202 202 6 chr3 91248612 91248795 -136275783 - MER20 DNA MER1_type 0 219 1 253 255 0 0 chr3 91249136 91249187 -136275391 - MER20 DNA MER1_type -168 51 1 190 232 297 19 chr3 91249602 91249757 -136274821 + L2 LINE L2 3115 3312 -1 2420 38 34 0 chr3 91249970 91250262 -136274316 + AluY SINE Alu 1 302 -9 1911 80 0 4 chr3 91251682 91251932 -136272646 + AluY SINE Alu 49 297 -14 1096 173 0 0 chr3 91252007 91252192 -136272386 + L1P LINE L1 4441 4625 -1521 22 35 0 0 chr3 91252746 91252775 -136271803 + AT_rich Low_complexity Low_complexity 1 29 0 2471 74 0 0 chr3 91252824 91253135 -136271443 + AluY SINE Alu 1 311 0 278 404 35 7 chr3 91253193 91253334 -136271244 + L3 LINE CR1 1058 1202 -375 344 376 107 13 chr3 91253352 91253586 -136270992 + L3 LINE CR1 1308 1563 -14 21 36 0 0 chr3 91255011 91255039 -136269539 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr3 91256143 91256181 -136268397 + AT_rich Low_complexity Low_complexity 1 38 0 234 207 103 0 chr3 91256621 91256679 -136267899 - L2 LINE L2 -9 3304 3241 445 238 140 49 chr3 91256795 91256959 -136267619 + MER5A DNA MER1_type 9 187 -2 2686 66 0 3 chr3 91257201 91257551 -136267027 + L1PA8 LINE L1 5824 6172 0 201 39 0 0 chr3 91258180 91258206 -136266372 + (TG)n Simple_repeat Simple_repeat 1 26 0 2333 128 100 3 chr3 91258448 91258838 -136265740 + MSTA LTR MaLR 1 428 0 196 311 107 19 chr3 91260383 91260486 -136264092 + L2 LINE L2 2896 3007 -265 3132 257 89 45 chr3 91261652 91263279 -136261299 - L1MCc LINE L1 -2022 4919 3221 1210 302 56 26 chr3 91263326 91264447 -136260131 - L1MCc LINE L1 -4640 2482 1113 992 295 61 22 chr3 91264611 91265055 -136259523 - L1MCc LINE L1 -5943 480 20 1485 184 19 0 chr3 91265539 91265800 -136258778 - MSTC LTR MaLR -2 426 161 1668 258 2 13 chr3 91265918 91266376 -136258202 - L1 LINE L1 -3344 2802 2350 2631 311 197 43 chr3 91267123 91269408 -136255170 + L2 LINE L2 40 2675 -639 2041 261 69 2 chr3 91269747 91270330 -136254248 + MLT1E3 LTR MaLR 3 624 0 190 348 0 11 chr3 91270698 91270787 -136253791 - MIR SINE MIR 0 262 175 1664 193 130 11 chr3 91270813 91271191 -136253387 - MSTA LTR MaLR -5 423 1 26 50 0 0 chr3 91271620 91271660 -136252918 + AT_rich Low_complexity Low_complexity 1 40 0 191 318 25 0 chr3 91272472 91272549 -136252029 + MIR SINE MIR 112 152 -56 408 285 83 0 chr3 91272894 91273038 -136251540 - MER63A DNA MER1_type -1 209 54 2126 99 3 0 chr3 91278245 91278565 -136246013 - AluSp SINE Alu 0 321 1 25 31 0 0 chr3 91278857 91278889 -136245689 + AT_rich Low_complexity Low_complexity 1 32 0 1723 190 7 0 chr3 91279094 91279394 -136245184 - AluJb SINE Alu -10 302 1 205 208 19 38 chr3 91279669 91279722 -136244856 - MIR SINE MIR -76 132 81 415 237 59 79 chr3 91280974 91281126 -136243452 - MER112 DNA MER1_type -27 233 85 271 0 51 0 chr3 91281132 91281171 -136243407 + (TG)n Simple_repeat Simple_repeat 2 42 0 1094 220 52 74 chr3 91281182 91281546 -136243032 + MLT1A2 LTR MaLR 2 357 -17 213 39 0 0 chr3 91281587 91281613 -136242965 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 2836 170 26 12 chr3 91283332 91283903 -136240675 - L1MB3 LINE L1 -3 6180 5602 4046 221 30 10 chr3 91283916 91284852 -136239726 - L1MC3 LINE L1 -1314 6471 5517 268 287 46 0 chr3 91285034 91285121 -136239457 + MIR SINE MIR 70 160 -102 22 0 0 0 chr3 91285427 91285449 -136239129 + AT_rich Low_complexity Low_complexity 1 22 0 1339 121 24 0 chr3 91286022 91286229 -136238349 + L1PA10 LINE L1 5952 6163 -5 24 0 0 0 chr3 91286229 91286253 -136238325 + AT_rich Low_complexity Low_complexity 1 24 0 187 299 193 32 chr3 91286807 91287238 -136237340 - L2 LINE L2 -1017 2297 1798 260 53 26 0 chr3 91287358 91287396 -136237182 + (TC)n Simple_repeat Simple_repeat 1 39 0 204 286 16 0 chr3 91288009 91288072 -136236506 + MIR SINE MIR 196 259 -3 419 302 80 96 chr3 91288127 91288577 -136236001 + LTR67 LTR ERVL 115 557 0 1145 73 6 51 chr3 91289242 91289419 -136235159 - L1PA8 LINE L1 0 6172 6004 1488 156 68 17 chr3 91290186 91290481 -136234097 + L1MC1 LINE L1 6016 6325 -8 2021 133 89 12 chr3 91291432 91291770 -136232808 + THE1B LTR MaLR 1 364 0 231 125 0 0 chr3 91291847 91291887 -136232691 + (CA)n Simple_repeat Simple_repeat 2 41 0 1513 160 131 33 chr3 91293994 91294331 -136230247 + THE1C LTR MaLR 6 375 0 224 385 43 8 chr3 91295688 91295805 -136228773 - MIR3 SINE MIR -22 186 66 279 288 0 0 chr3 91295910 91295976 -136228602 - MIR SINE MIR -11 251 186 1245 141 94 31 chr3 91295979 91296235 -136228343 - L1PA15 LINE L1 -2 6163 5892 294 355 41 35 chr3 91296235 91296404 -136228174 - MIR SINE MIR -83 179 10 37 0 0 0 chr3 91296513 91296550 -136228028 + AT_rich Low_complexity Low_complexity 1 37 0 332 276 159 41 chr3 91296882 91297027 -136227551 - MIR SINE MIR -93 169 8 554 224 142 0 chr3 91297253 91297436 -136227142 + MER3 DNA MER1_type 1 209 0 275 214 18 0 chr3 91297459 91297515 -136227063 + MER112 DNA MER1_type 4 60 -200 26 30 0 0 chr3 91298301 91298334 -136226244 + AT_rich Low_complexity Low_complexity 1 33 0 306 0 0 0 chr3 91298428 91298462 -136226116 + (TA)n Simple_repeat Simple_repeat 2 35 0 561 99 0 0 chr3 91298462 91298543 -136226035 + (CA)n Simple_repeat Simple_repeat 2 82 0 26 50 0 0 chr3 91298985 91299025 -136225553 + AT_rich Low_complexity Low_complexity 1 40 0 246 228 26 18 chr3 91299326 91299440 -136225138 + (TA)n Simple_repeat Simple_repeat 1 115 0 399 251 44 131 chr3 91299447 91299722 -136224856 - L1ME LINE L1 -303 5818 5568 719 290 5 0 chr3 91299830 91300016 -136224562 - MER5A DNA MER1_type -2 187 1 353 269 139 19 chr3 91300118 91300326 -136224252 + L1 LINE L1 3525 3757 -2389 561 309 105 20 chr3 91300391 91300951 -136223627 + L1 LINE L1 3922 4546 -1600 305 309 45 54 chr3 91301201 91301515 -136223063 + L1MC/D LINE L1 4717 5027 -1119 28 71 0 0 chr3 91301517 91301573 -136223005 + AT_rich Low_complexity Low_complexity 1 56 0 390 288 49 0 chr3 91301738 91301969 -136222609 + L1MC/D LINE L1 5255 5503 -689 31 44 0 0 chr3 91302269 91302314 -136222264 + AT_rich Low_complexity Low_complexity 1 45 0 256 240 0 0 chr3 91302389 91302439 -136222139 - MER94 DNA DNA -80 54 5 2086 118 0 0 chr3 91303927 91304215 -136220363 + AluSc SINE Alu 2 289 -20 4909 80 9 14 chr3 91304232 91304922 -136219656 + L1PA8 LINE L1 5483 6168 -4 24 32 0 0 chr3 91306214 91306245 -136218333 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3 91306579 91306607 -136217971 + AT_rich Low_complexity Low_complexity 1 28 0 2417 28 0 0 chr3 91306941 91307227 -136217351 + L1PA3 LINE L1 5867 6152 -3 31 0 0 0 chr3 91307227 91307258 -136217320 + AT_rich Low_complexity Low_complexity 1 31 0 37 62 0 0 chr3 91307596 91307661 -136216917 + AT_rich Low_complexity Low_complexity 1 65 0 26 30 0 0 chr3 91307737 91307770 -136216808 + AT_rich Low_complexity Low_complexity 1 33 0 223 313 9 52 chr3 91308845 91308960 -136215618 + L2 LINE L2 2301 2410 -904 1817 173 83 44 chr3 91309984 91310394 -136214184 - MSTB LTR MaLR 0 426 1 2101 120 0 0 chr3 91310530 91310821 -136213757 + AluSg1 SINE Alu 1 291 -18 267 369 74 20 chr3 91311104 91311253 -136213325 - L2 LINE L2 -603 2711 2555 9769 214 30 39 chr3 91311282 91313432 -136211146 + L1MA2 LINE L1 19 2148 -5417 11160 171 31 8 chr3 91313452 91316784 -136207794 + L1MA2 LINE L1 4316 7722 -1 816 118 33 7 chr3 91317198 91317350 -136207228 + CT-rich Low_complexity Low_complexity 3 158 0 331 141 28 42 chr3 91317352 91317423 -136207155 - L1PA16 LINE L1 -1 6165 6096 330 203 0 0 chr3 91317423 91317487 -136207091 + L1PA16 LINE L1 6048 6111 -55 21 0 0 0 chr3 91317930 91317951 -136206627 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 91318111 91318139 -136206439 + AT_rich Low_complexity Low_complexity 1 28 0 3494 50 20 0 chr3 91318220 91318661 -136205917 - L1PA6 LINE L1 -2 6152 5703 996 85 0 122 chr3 91318672 91318860 -136205718 + L1P LINE L1 4687 4851 -1295 2190 191 19 7 chr3 91319160 91319578 -136205000 - MSTB LTR MaLR -2 424 2 2191 118 0 0 chr3 91319627 91319931 -136204647 + AluSq SINE Alu 1 304 -9 240 167 0 0 chr3 91320116 91320164 -136204414 + (TA)n Simple_repeat Simple_repeat 2 49 0 907 93 0 46 chr3 91320423 91320574 -136204004 + L1PA8 LINE L1 6029 6172 0 216 0 0 0 chr3 91322707 91322731 -136201847 + (A)n Simple_repeat Simple_repeat 1 24 0 2191 78 20 7 chr3 91323081 91323375 -136201203 + AluSg SINE Alu 1 298 -12 253 279 75 20 chr3 91323422 91323623 -136200955 + L1MEc LINE L1 1256 1467 -4929 402 332 100 7 chr3 91323898 91324208 -136200370 + HAL1b LINE L1 434 772 -576 261 282 8 32 chr3 91324229 91324353 -136200225 + L1MCc LINE L1 58 178 -6245 258 313 10 0 chr3 91324358 91324457 -136200121 + L1MCc LINE L1 235 334 -6089 222 261 120 0 chr3 91324607 91324699 -136199879 - MER5C DNA MER1_type -5 319 217 251 407 0 0 chr3 91324727 91324845 -136199733 - MER5C DNA MER1_type -206 118 1 1367 215 31 3 chr3 91324903 91325191 -136199387 + AluJo SINE Alu 1 296 -16 289 296 45 39 chr3 91325382 91325561 -136199017 + L1M4 LINE L1 4529 4708 -1438 206 75 0 50 chr3 91325786 91325826 -136198752 + (TTTTG)n Simple_repeat Simple_repeat 2 39 0 275 227 35 64 chr3 91325945 91326277 -136198301 - L1M2c LINE L1 -4877 1550 1025 1841 142 34 47 chr3 91328070 91328450 -136196128 + THE1C LTR MaLR 1 375 0 818 19 19 0 chr3 91329041 91329144 -136195434 + (TTTTA)n Simple_repeat Simple_repeat 2 106 0 182 37 37 0 chr3 91329196 91329223 -136195355 + (TAA)n Simple_repeat Simple_repeat 1 28 0 1820 231 39 67 chr3 91329497 91330139 -136194439 + MLT1E3 LTR MaLR 1 624 0 23 33 0 0 chr3 91330217 91330247 -136194331 + AT_rich Low_complexity Low_complexity 1 30 0 456 261 23 109 chr3 91330680 91330937 -136193641 - MLT1J1 LTR MaLR -4 442 208 2116 150 62 60 chr3 91330976 91331395 -136193183 + MSTC LTR MaLR 4 423 -5 356 303 21 14 chr3 91331400 91331542 -136193036 - MLT1J1 LTR MaLR -276 170 28 322 195 0 106 chr3 91331983 91332088 -136192490 - L1MC5 LINE L1 -33 7928 7836 1792 188 3 52 chr3 91332088 91332472 -136192106 + MLT1A1 LTR MaLR 1 365 0 322 195 0 106 chr3 91332472 91332489 -136192089 - L1MC5 LINE L1 -125 7836 7819 183 419 16 16 chr3 91333776 91333900 -136190678 + L2 LINE L2 2509 2632 -682 21 36 0 0 chr3 91335939 91335967 -136188611 + AT_rich Low_complexity Low_complexity 1 28 0 33 43 0 0 chr3 91336144 91336191 -136188387 + AT_rich Low_complexity Low_complexity 1 47 0 225 228 97 88 chr3 91336457 91336571 -136188007 + MIR SINE MIR 90 204 -58 222 37 0 0 chr3 91336595 91336622 -136187956 + (TTTTA)n Simple_repeat Simple_repeat 5 31 0 2481 249 72 60 chr3 91337007 91337719 -136186859 - L1MD2 LINE L1 -20 6616 5914 2162 100 0 0 chr3 91337719 91338035 -136186543 - AluSg SINE Alu 0 316 1 2481 249 72 60 chr3 91338035 91338132 -136186446 - L1MD2 LINE L1 -722 5914 5820 2738 203 29 4 chr3 91338132 91338678 -136185900 + MER68 LTR ERV1 1 560 -2 2481 249 72 60 chr3 91338678 91339948 -136184630 - L1MD2 LINE L1 -816 5820 4550 1800 223 41 50 chr3 91339954 91340614 -136183964 - L1MD2 LINE L1 -4808 1732 1079 4048 70 2 2 chr3 91340619 91341173 -136183405 + L1PA8 LINE L1 5620 6173 0 2923 277 80 30 chr3 91341173 91342179 -136182399 - L1MD2 LINE L1 -5466 1074 19 189 107 0 0 chr3 91342645 91342673 -136181905 + (GA)n Simple_repeat Simple_repeat 2 29 0 1524 207 0 28 chr3 91343746 91344036 -136180542 + AluJo SINE Alu 6 287 -25 261 0 0 0 chr3 91344037 91344066 -136180512 + (TG)n Simple_repeat Simple_repeat 2 30 0 360 218 46 0 chr3 91344476 91344563 -136180015 - LTR50 LTR ERVL 0 795 705 740 253 121 19 chr3 91344915 91345172 -136179406 - LTR50 LTR ERVL -512 283 1 11361 93 27 30 chr3 91346277 91347008 -136177570 - HERVL-A2 LTR ERVL -4004 1650 919 333 0 0 0 chr3 91347008 91347045 -136177533 + (TA)n Simple_repeat Simple_repeat 1 37 0 11361 93 27 30 chr3 91347045 91347965 -136176613 - HERVL-A2 LTR ERVL -4735 919 3 2908 101 46 14 chr3 91347965 91348007 -136176571 - MLT2A2 LTR ERVL -3 450 411 598 0 38 38 chr3 91348007 91348113 -136176465 + (TA)n Simple_repeat Simple_repeat 1 106 0 2908 101 46 14 chr3 91348113 91348506 -136176072 - MLT2A2 LTR ERVL -42 411 1 3248 347 48 43 chr3 91348567 91351224 -136173354 - ERVL LTR ERVL -2448 3316 553 639 271 141 35 chr3 91351698 91352154 -136172424 - LTR50 LTR ERVL -16 779 191 2145 134 0 0 chr3 91353408 91353721 -136170857 - AluSq SINE Alu 0 313 1 23 86 0 0 chr3 91354195 91354253 -136170325 + AT_rich Low_complexity Low_complexity 1 58 0 3451 213 21 60 chr3 91354370 91355044 -136169534 + L1MB7 LINE L1 846 1472 -5383 1933 105 44 17 chr3 91355044 91355339 -136169239 + AluSx SINE Alu 3 305 -7 3451 213 21 60 chr3 91355339 91355759 -136168819 + L1MB7 LINE L1 1472 1906 -4949 3226 229 21 15 chr3 91355764 91356448 -136168130 + L1MB7 LINE L1 5707 6407 -588 1953 146 39 36 chr3 91356448 91356811 -136167767 - THE1B LTR MaLR 0 364 1 3226 229 21 15 chr3 91356811 91357257 -136167321 + L1MB7 LINE L1 6407 6849 -146 335 267 48 0 chr3 91357259 91357364 -136167214 + L1MB8 LINE L1 6069 6178 0 231 287 103 11 chr3 91358993 91359080 -136165498 + Tigger8 DNA MER2_type 132 226 -440 731 22 22 0 chr3 91359571 91359663 -136164915 + (TCTA)n Simple_repeat Simple_repeat 4 97 0 1265 187 4 13 chr3 91359663 91359893 -136164685 - AluJo SINE Alu -25 287 60 1786 176 33 30 chr3 91360098 91360462 -136164116 + MLT1A1 LTR MaLR 1 365 0 473 209 0 0 chr3 91360477 91360582 -136163996 - L1PA16 LINE L1 0 6166 6062 4906 139 23 5 chr3 91360706 91361821 -136162757 - L1PA16 LINE L1 0 6166 4997 24 0 0 0 chr3 91361879 91361903 -136162675 + AT_rich Low_complexity Low_complexity 1 24 0 356 253 36 25 chr3 91361903 91362064 -136162514 - FRAM SINE Alu -10 156 1 350 291 0 9 chr3 91362388 91362498 -136162080 - L1ME2 LINE L1 -18 6146 6038 1701 179 3 10 chr3 91363004 91363294 -136161284 + AluJo SINE Alu 1 288 -24 201 296 0 0 chr3 91363469 91363513 -136161065 - L2 LINE L2 -9 3304 3261 2952 116 11 7 chr3 91363629 91364067 -136160511 - MLT2A1 LTR ERVL -4 440 1 501 47 0 0 chr3 91364227 91364291 -136160287 + (TG)n Simple_repeat Simple_repeat 2 65 0 588 206 0 0 chr3 91364298 91364405 -136160173 - FLAM_C SINE Alu -36 107 1 371 338 124 33 chr3 91366466 91366886 -136157692 - L2 LINE L2 -16 3297 2840 55 40 0 0 chr3 91367090 91367166 -136157412 + AT_rich Low_complexity Low_complexity 1 76 0 488 114 0 0 chr3 91367418 91367488 -136157090 + L1PA10 LINE L1 6088 6157 -11 2212 114 48 20 chr3 91367570 91367921 -136156657 + THE1B LTR MaLR 2 362 -2 11159 109 10 1 chr3 91367923 91369482 -136155096 + THE1B-int LTR MaLR 1 1574 -6 2039 137 36 22 chr3 91369487 91369846 -136154732 + THE1B LTR MaLR 1 364 0 368 265 235 0 chr3 91369855 91369991 -136154587 + MIR SINE MIR 78 245 -17 202 311 16 0 chr3 91370234 91370295 -136154283 + L2 LINE L2 3248 3309 -4 825 265 17 13 chr3 91370668 91370898 -136153680 - MLT1E LTR MaLR -74 519 289 333 0 0 0 chr3 91371212 91371249 -136153329 + (A)n Simple_repeat Simple_repeat 1 37 0 35 0 0 0 chr3 91371702 91371737 -136152841 + AT_rich Low_complexity Low_complexity 1 35 0 202 174 66 0 chr3 91371739 91371906 -136152672 + (TA)n Simple_repeat Simple_repeat 1 178 0 189 131 39 77 chr3 91371912 91372042 -136152536 + (TATAA)n Simple_repeat Simple_repeat 5 129 0 22 35 0 0 chr3 91372062 91372091 -136152487 + AT_rich Low_complexity Low_complexity 1 29 0 247 234 47 8 chr3 91372094 91372222 -136152356 + (TA)n Simple_repeat Simple_repeat 1 133 0 215 203 17 0 chr3 91373224 91373283 -136151295 + (TA)n Simple_repeat Simple_repeat 2 61 0 351 0 0 0 chr3 91373759 91373798 -136150780 + (T)n Simple_repeat Simple_repeat 1 39 0 259 212 41 48 chr3 91374267 91374413 -136150165 + (TTATA)n Simple_repeat Simple_repeat 5 149 0 35 54 0 0 chr3 91374447 91374503 -136150075 + AT_rich Low_complexity Low_complexity 1 56 0 1427 310 45 24 chr3 91375955 91376506 -136148072 + L1M3e LINE L1 469 1031 -6458 3694 250 44 54 chr3 91376626 91376923 -136147655 + L1M3e LINE L1 1933 2231 -5334 267 31 0 0 chr3 91376923 91376955 -136147623 + (CA)n Simple_repeat Simple_repeat 2 33 0 3694 250 44 54 chr3 91376955 91377446 -136147132 + L1M3e LINE L1 2231 2725 -4840 1907 164 3 0 chr3 91377446 91377757 -136146821 - AluSx SINE Alu 0 312 1 3694 250 44 54 chr3 91377757 91378941 -136145637 + L1M3e LINE L1 2725 3885 -3680 643 189 0 0 chr3 91378954 91379081 -136145497 + L1M3e LINE L1 4807 4933 -2632 661 161 84 0 chr3 91379124 91379267 -136145311 - L1 LINE L1 -3691 2455 2301 192 200 0 0 chr3 91379268 91379318 -136145260 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 9345 193 44 63 chr3 91379322 91380162 -136144416 + L1MA8 LINE L1 2447 3301 -2845 2396 68 0 0 chr3 91380162 91380471 -136144107 + L1PA6 LINE L1 5846 6154 0 2222 67 0 3 chr3 91380473 91380784 -136143794 + AluY SINE Alu 1 310 0 9345 193 44 63 chr3 91380784 91380795 -136143783 + L1MA8 LINE L1 3302 3312 -2834 2245 77 0 3 chr3 91380795 91381092 -136143486 + AluY SINE Alu 1 296 -15 9345 193 44 63 chr3 91381092 91381176 -136143402 + L1MA8 LINE L1 3312 3396 -2750 1950 149 3 7 chr3 91381176 91381485 -136143093 + AluSx SINE Alu 1 308 -4 9345 193 44 63 chr3 91381485 91382473 -136142105 + L1MA8 LINE L1 3396 4321 -1825 2287 94 0 0 chr3 91382473 91382770 -136141808 - AluSc SINE Alu -12 297 1 9345 193 44 63 chr3 91382770 91383353 -136141225 + L1MA8 LINE L1 4321 4913 -1233 1295 173 12 14 chr3 91383342 91383659 -136140919 + L1MA8 LINE L1 5131 5446 -743 * 2810 194 24 21 chr3 91383635 91384263 -136140315 + L1MA8 LINE L1 5662 6291 0 1636 163 58 0 chr3 91384327 91384603 -136139975 + AluJb SINE Alu 21 312 0 21 0 0 0 chr3 91384676 91384697 -136139881 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr3 91385158 91385194 -136139384 + AT_rich Low_complexity Low_complexity 1 36 0 32 26 0 0 chr3 91386543 91386582 -136137996 + AT_rich Low_complexity Low_complexity 1 39 0 3870 193 167 30 chr3 91386680 91387657 -136136921 + L1M1 LINE L1 1187 2361 -5204 22 35 0 0 chr3 91387792 91387821 -136136757 + AT_rich Low_complexity Low_complexity 1 29 0 226 204 80 71 chr3 91387883 91387996 -136136582 + L1ME4a LINE L1 6007 6120 -1 26 0 0 0 chr3 91388141 91388167 -136136411 + AT_rich Low_complexity Low_complexity 1 26 0 191 301 138 8 chr3 91388450 91388573 -136136005 + MIR SINE MIR 75 213 -49 3140 145 52 24 chr3 91388804 91389641 -136134937 + LTR1 LTR ERV1 2 785 0 2288 94 0 7 chr3 91389658 91389966 -136134612 - AluSq SINE Alu -4 309 4 306 246 49 70 chr3 91391119 91391261 -136133317 - LTR67 LTR ERVL -21 536 398 2662 220 6 6 chr3 91391301 91391846 -136132732 - LTR38 LTR ERV1 -11 545 1 1472 218 3 3 chr3 91392607 91392901 -136131677 + AluJo SINE Alu 1 294 -18 1568 46 68 5 chr3 91392909 91393128 -136131450 - L1M1 LINE L1 -708 5596 5364 1249 38 6 12 chr3 91393130 91393290 -136131288 + L1MA1 LINE L1 6143 6301 -1 32 75 0 0 chr3 91393295 91393362 -136131216 + AT_rich Low_complexity Low_complexity 1 67 0 2017 133 3 3 chr3 91393825 91394127 -136130451 - AluSx SINE Alu -10 302 1 21 36 0 0 chr3 91395393 91395421 -136129157 + AT_rich Low_complexity Low_complexity 1 28 0 1086 195 84 41 chr3 91397460 91397804 -136126774 - L1MB8 LINE L1 -1 6177 5819 1804 151 0 7 chr3 91397945 91398260 -136126318 + AluSx SINE Alu 7 319 0 4870 107 56 11 chr3 91398332 91399078 -136125500 - LTR17 LTR ERV1 0 780 1 191 208 56 97 chr3 91400076 91400148 -136124430 - L2 LINE L2 -469 2845 2777 23 33 0 0 chr3 91401454 91401484 -136123094 + AT_rich Low_complexity Low_complexity 1 30 0 776 211 134 5 chr3 91402524 91402718 -136121860 + MER20 DNA MER1_type 1 219 0 250 289 11 11 chr3 91403008 91403098 -136121480 + MLT1K LTR MaLR 491 580 -8 375 353 76 44 chr3 91403129 91403561 -136121017 - L2 LINE L2 -174 3098 2659 557 169 157 58 chr3 91403652 91403824 -136120754 + MLT1D LTR MaLR 317 505 0 241 336 93 0 chr3 91403969 91404076 -136120502 - MIR SINE MIR -70 192 76 215 123 18 70 chr3 91404317 91404374 -136120204 + T-rich Low_complexity Low_complexity 6 59 0 849 242 4 39 chr3 91404933 91405164 -136119414 - MER58A DNA MER1_type -1 223 1 1490 58 32 0 chr3 91405357 91405546 -136119032 + AluY SINE Alu 115 309 -2 941 178 6 0 chr3 91406382 91406562 -136118016 + AluY SINE Alu 130 310 -1 1900 38 4 0 chr3 91408282 91408517 -136116061 + L1PA4 LINE L1 5917 6152 -3 704 165 0 0 chr3 91408708 91408811 -136115767 + FLAM_C SINE Alu 21 123 -20 212 162 0 0 chr3 91409531 91409568 -136115010 + (CA)n Simple_repeat Simple_repeat 2 38 0 491 312 106 8 chr3 91409962 91410199 -136114379 - MLT1H LTR MaLR -185 364 105 255 353 33 0 chr3 91410427 91410549 -136114029 - MIR SINE MIR -42 220 95 519 203 119 0 chr3 91410666 91410784 -136113794 - FLAM_A SINE Alu 0 133 2 31 82 0 0 chr3 91411121 91411194 -136113384 + AT_rich Low_complexity Low_complexity 1 73 0 397 282 60 43 chr3 91411472 91411706 -136112872 - MLT1I LTR MaLR -8 401 164 1156 167 18 31 chr3 91411712 91411939 -136112639 + AluJo SINE Alu 82 305 -7 22 0 0 0 chr3 91412432 91412454 -136112124 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr3 91412820 91412851 -136111727 + AT_rich Low_complexity Low_complexity 1 31 0 254 395 38 11 chr3 91413596 91413862 -136110716 + MLT1L LTR MaLR 1 273 -342 216 308 0 44 chr3 91414821 91414912 -136109666 + L2 LINE L2 3171 3257 -56 29 90 0 0 chr3 91415130 91415208 -136109370 + AT_rich Low_complexity Low_complexity 1 78 0 1696 231 50 3 chr3 91415441 91415818 -136108760 + MER89 LTR ERV1 156 550 -9 2164 122 39 33 chr3 91416298 91416660 -136107918 - THE1B LTR MaLR 0 364 1 29 78 0 0 chr3 91416976 91417040 -136107538 + AT_rich Low_complexity Low_complexity 1 64 0 31 44 0 0 chr3 91419340 91419385 -136105193 + AT_rich Low_complexity Low_complexity 1 45 0 21 82 0 0 chr3 91419852 91419901 -136104677 + AT_rich Low_complexity Low_complexity 1 49 0 2113 123 7 3 chr3 91420233 91420534 -136104044 - AluSg SINE Alu -8 302 1 942 169 0 79 chr3 91420623 91420812 -136103766 + AluJo SINE Alu 6 179 -133 529 315 39 25 chr3 91420812 91421092 -136103486 - LTR36 LTR ERV1 0 611 279 1976 128 0 7 chr3 91421250 91421531 -136103047 + AluSg SINE Alu 2 280 -30 311 140 0 0 chr3 91421538 91421588 -136102990 + L1PB4 LINE L1 6079 6128 -28 1352 205 132 43 chr3 91421592 91422084 -136102494 + LTR10B LTR ERV1 1 536 -11 2669 147 32 13 chr3 91422551 91423005 -136101573 - MER72 LTR ERV1 0 722 167 1499 148 4 0 chr3 91423005 91423234 -136101344 - MER30 DNA MER1_type 0 230 1 2669 147 32 13 chr3 91423234 91423396 -136101182 - MER72 LTR ERV1 -555 167 10 234 338 76 40 chr3 91423404 91423602 -136100976 - L2 LINE L2 -693 2621 2417 549 300 130 24 chr3 91423621 91423991 -136100587 + MLT1J2 LTR MaLR 20 428 -22 469 309 61 0 chr3 91424093 91424258 -136100320 - L2 LINE L2 -955 2359 2185 2197 81 28 8 chr3 91424401 91424797 -136099781 - LTR7 LTR ERV1 -2 448 1 2882 178 73 12 chr3 91424907 91425493 -136099085 + LTR29 LTR ERV1 1 622 0 1200 111 0 0 chr3 91426545 91426725 -136097853 + (TA)n Simple_repeat Simple_repeat 1 180 0 205 182 0 0 chr3 91426725 91426758 -136097820 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 246 130 0 0 chr3 91426758 91426804 -136097774 - LTR66 LTR ERVL -171 439 394 194 283 19 19 chr3 91426855 91426908 -136097670 + L2 LINE L2 3147 3199 -73 3931 147 13 2 chr3 91426937 91427565 -136097013 + MER41B LTR ERV1 1 635 0 1626 203 0 7 chr3 91427933 91428224 -136096354 - AluJo SINE Alu -6 306 18 213 354 82 0 chr3 91428297 91428444 -136096134 - L2 LINE L2 -561 2753 2595 297 373 106 32 chr3 91428512 91428645 -136095933 - L2 LINE L2 -850 2464 2342 1907 224 40 89 chr3 91428645 91429372 -136095206 + LTR8 LTR ERV1 1 691 0 297 373 106 32 chr3 91429372 91429681 -136094897 - L2 LINE L2 -972 2342 1989 1575 197 69 48 chr3 91430064 91430606 -136093972 + MER67C LTR ERV1 1 510 -4 2335 96 0 10 chr3 91430986 91431300 -136093278 + AluSx SINE Alu 1 311 -1 354 23 0 0 chr3 91431301 91431344 -136093234 + (TA)n Simple_repeat Simple_repeat 1 43 0 1027 287 75 25 chr3 91432226 91432627 -136091951 + LTR16C LTR ERVL 47 467 -24 280 282 0 14 chr3 91432633 91432704 -136091874 + MLT1J LTR MaLR 110 179 -332 27 0 0 0 chr3 91433082 91433109 -136091469 + AT_rich Low_complexity Low_complexity 1 27 0 2617 46 0 0 chr3 91433199 91433503 -136091075 - AluY SINE Alu -5 306 3 939 228 48 89 chr3 91433947 91434263 -136090315 + MLT1D LTR MaLR 188 490 -15 438 269 109 0 chr3 91434369 91434488 -136090090 + HERV16 LTR ERVL 995 1126 -3870 955 312 38 19 chr3 91434643 91435008 -136089570 + LTR16A LTR ERVL 69 440 -10 295 336 60 60 chr3 91435622 91435890 -136088688 - L2 LINE L2 -354 2960 2693 203 395 36 6 chr3 91437454 91437621 -136086957 + L2 LINE L2 2216 2387 -927 347 362 63 14 chr3 91438131 91438352 -136086226 - MIR SINE MIR -2 260 29 673 184 20 7 chr3 91439085 91439232 -136085346 - L1MD3 LINE L1 -21 7974 7826 591 213 53 53 chr3 91439233 91439458 -136085120 - L1MC4a LINE L1 -813 6995 6771 23 33 0 0 chr3 91439458 91439488 -136085090 + AT_rich Low_complexity Low_complexity 1 30 0 183 80 53 53 chr3 91439489 91439564 -136085014 + (TTATA)n Simple_repeat Simple_repeat 5 79 0 450 296 28 0 chr3 91439586 91439728 -136084850 - L1MC4 LINE L1 -1201 6841 6696 2713 246 73 27 chr3 91439735 91440945 -136083633 - L1MD3 LINE L1 -743 5403 5178 2114 102 17 0 chr3 91441101 91441395 -136083183 + AluSp SINE Alu 1 299 -14 24 0 0 0 chr3 91441596 91441620 -136082958 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr3 91441960 91441993 -136082585 + AT_rich Low_complexity Low_complexity 1 33 0 250 176 0 29 chr3 91442191 91442259 -136082319 + GA-rich Low_complexity Low_complexity 4 69 0 537 339 29 13 chr3 91442575 91442814 -136081764 + MIR SINE MIR 2 244 -18 411 266 127 17 chr3 91443271 91443444 -136081134 + MIR SINE MIR 70 261 -1 223 320 24 80 chr3 91445369 91445494 -136079084 - MER5B DNA MER1_type 0 178 61 22 35 0 0 chr3 91445711 91445740 -136078838 + AT_rich Low_complexity Low_complexity 1 29 0 2078 176 5 62 chr3 91446279 91446728 -136077850 - MSTB LTR MaLR 0 426 4 304 321 77 36 chr3 91446728 91446896 -136077682 - L3 LINE CR1 -56 1521 1347 214 343 82 8 chr3 91447109 91447243 -136077335 + MIR3 SINE MIR 53 196 -12 1716 103 13 87 chr3 91447990 91448300 -136076278 + AluSx SINE Alu 24 310 -2 199 194 0 0 chr3 91448330 91448366 -136076212 - L2 LINE L2 -15 3298 3263 1867 157 0 17 chr3 91448403 91448697 -136075881 + AluSx SINE Alu 1 289 -23 258 114 68 0 chr3 91449444 91449488 -136075090 + MSTC LTR MaLR 1 47 -349 373 180 0 0 chr3 91449496 91449557 -136075021 - 7SK RNA RNA 0 193 133 496 254 79 12 chr3 91449585 91449750 -136074828 - 7SK RNA RNA -17 176 1 658 204 0 34 chr3 91449774 91449921 -136074657 + MSTC LTR MaLR 78 219 -209 3837 125 29 55 chr3 91450041 91450381 -136074197 + L1MA2 LINE L1 2380 2727 -4838 1788 131 0 48 chr3 91450381 91450671 -136073907 + AluSx SINE Alu 1 276 -36 3837 125 29 55 chr3 91450671 91450953 -136073625 + L1MA2 LINE L1 2727 2979 -4586 2342 99 0 10 chr3 91450953 91451266 -136073312 - AluSp SINE Alu 0 313 4 3837 125 29 55 chr3 91451266 91451449 -136073129 + L1MA2 LINE L1 2979 3165 -4400 3988 198 11 10 chr3 91451484 91452777 -136071801 + L1MA2 LINE L1 3165 4459 -3106 6095 149 54 3 chr3 91452789 91454165 -136070413 + L1MA2 LINE L1 5787 7275 -448 225 0 0 0 chr3 91454165 91454190 -136070388 + (CA)n Simple_repeat Simple_repeat 2 26 0 6095 149 54 3 chr3 91454190 91454663 -136069915 + L1MA2 LINE L1 7275 7722 -1 204 40 0 0 chr3 91455455 91455480 -136069098 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 371 51 0 34 chr3 91455806 91455865 -136068713 + (TCTCTG)n Simple_repeat Simple_repeat 4 60 0 486 213 0 61 chr3 91456330 91456494 -136068084 - L1MA7 LINE L1 0 6291 6138 25 65 0 0 chr3 91456715 91456761 -136067817 + AT_rich Low_complexity Low_complexity 1 46 0 243 88 0 0 chr3 91457496 91457530 -136067048 + (A)n Simple_repeat Simple_repeat 1 34 0 301 258 38 150 chr3 91458881 91458995 -136065583 - LTR16C LTR ERVL 0 491 366 2154 95 7 0 chr3 91458995 91459280 -136065298 + AluSp SINE Alu 1 287 -26 1571 0 6 0 chr3 91459286 91459465 -136065113 + (TAAAA)n Simple_repeat Simple_repeat 1 180 0 301 258 38 150 chr3 91459465 91459610 -136064968 - LTR16C LTR ERVL -130 361 255 927 263 23 0 chr3 91459671 91459888 -136064690 - MER58A DNA MER1_type -1 223 2 21 0 0 0 chr3 91460830 91460851 -136063727 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 91461555 91461576 -136063002 + AT_rich Low_complexity Low_complexity 1 21 0 1673 130 20 37 chr3 91461577 91461877 -136062701 - L1PA16 LINE L1 -17 6149 5855 748 245 102 70 chr3 91462132 91462580 -136061998 + MLT1E1 LTR MaLR 69 578 -76 576 259 10 8 chr3 91462583 91462734 -136061844 - MIR SINE MIR -63 145 13 306 0 0 0 chr3 91462920 91462954 -136061624 + (TG)n Simple_repeat Simple_repeat 1 34 0 295 304 81 86 chr3 91463017 91464093 -136060485 - L1MEc LINE L1 -5290 1106 36 358 284 26 9 chr3 91464719 91464741 -136059837 + L1MC4 LINE L1 6586 6606 -1436 2476 24 0 0 chr3 91464741 91465029 -136059549 + L1PA5 LINE L1 5852 6139 -15 358 284 26 9 chr3 91465029 91465122 -136059456 + L1MC4 LINE L1 6606 6703 -1339 2444 61 0 0 chr3 91465134 91465431 -136059147 + AluY SINE Alu 1 297 -14 21 57 0 0 chr3 91466235 91466270 -136058308 + AT_rich Low_complexity Low_complexity 1 35 0 219 189 0 0 chr3 91466440 91466493 -136058085 + (TA)n Simple_repeat Simple_repeat 2 54 0 7624 164 27 75 chr3 91468347 91471437 -136053141 - L1MA3 LINE L1 0 6305 3373 3003 85 33 0 chr3 91471439 91471861 -136052717 - L1PA7 LINE L1 0 6154 5719 393 236 69 7 chr3 91471864 91472008 -136052570 - L1MA3 LINE L1 -2896 3250 3098 26 0 0 0 chr3 91473266 91473292 -136051286 + AT_rich Low_complexity Low_complexity 1 26 0 234 163 78 16 chr3 91473507 91473636 -136050942 + (TA)n Simple_repeat Simple_repeat 2 138 0 299 310 96 30 chr3 91473893 91474090 -136050488 - MIR SINE MIR -45 217 8 570 276 64 47 chr3 91474151 91474601 -136049977 + L1MC5 LINE L1 7454 7911 -50 27 29 0 0 chr3 91474907 91474941 -136049637 + AT_rich Low_complexity Low_complexity 1 34 0 1169 88 47 47 chr3 91475057 91475249 -136049329 + L1PA12 LINE L1 5970 6161 -7 26 50 0 0 chr3 91475846 91475886 -136048692 + AT_rich Low_complexity Low_complexity 1 40 0 22 35 0 0 chr3 91476111 91476140 -136048438 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 91476625 91476646 -136047932 + AT_rich Low_complexity Low_complexity 1 21 0 1080 205 138 41 chr3 91476680 91477021 -136047557 - MLT1A2 LTR MaLR 0 374 1 513 271 110 18 chr3 91477103 91477321 -136047257 + MIR SINE MIR 4 241 -21 263 336 27 47 chr3 91477385 91477534 -136047044 - L2 LINE L2 0 3313 3168 439 355 80 0 chr3 91477741 91478003 -136046575 - L2 LINE L2 -424 2890 2608 1236 227 20 53 chr3 91478562 91478959 -136045619 - MLT1B LTR MaLR -3 387 4 1561 242 128 7 chr3 91478966 91479395 -136045183 - MLT1B-int LTR MaLR -5 1730 1250 381 253 35 0 chr3 91479414 91479501 -136045077 - MLT1B-int LTR MaLR -969 766 677 2640 215 62 41 chr3 91479567 91480320 -136044258 - MLT1-int LTR MaLR -482 889 33 26 0 0 0 chr3 91481458 91481484 -136043094 + AT_rich Low_complexity Low_complexity 1 26 0 5103 209 13 25 chr3 91483437 91484604 -136039974 + L1 LINE L1 3321 4473 -1673 2134 132 0 0 chr3 91485371 91485667 -136038911 - AluSx SINE Alu -16 296 1 243 0 0 0 chr3 91486585 91486612 -136037966 + (TA)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr3 91486637 91486658 -136037920 + AT_rich Low_complexity Low_complexity 1 21 0 197 247 86 37 chr3 91487242 91487323 -136037255 + MIR3 SINE MIR 110 194 -14 270 0 0 0 chr3 91488595 91488625 -136035953 + (TTTG)n Simple_repeat Simple_repeat 3 32 0 180 0 0 0 chr3 91489643 91489663 -136034915 + (A)n Simple_repeat Simple_repeat 1 20 0 278 194 0 56 chr3 91491000 91491108 -136033470 + (TAAA)n Simple_repeat Simple_repeat 4 105 0 689 308 77 13 chr3 91491661 91491895 -136032683 - MIR SINE MIR 0 262 14 2392 198 31 2 chr3 91494171 91494652 -136029926 - LTR42 LTR ERVL 0 495 1 1220 208 106 67 chr3 91494979 91495441 -136029137 + LTR48 LTR ERV1 1 480 -307 633 225 55 45 chr3 91495458 91495658 -136028920 + LTR48 LTR ERV1 586 787 0 632 196 40 27 chr3 91496397 91496693 -136027885 + AluY SINE Alu 2 301 0 23 33 0 0 chr3 91496864 91496894 -136027684 + AT_rich Low_complexity Low_complexity 1 30 0 21 71 0 0 chr3 91496986 91497028 -136027550 + AT_rich Low_complexity Low_complexity 1 42 0 1124 112 15 46 chr3 91497471 91497667 -136026911 + LTR1B LTR ERV1 1 190 -636 580 197 8 16 chr3 91497662 91497789 -136026789 + LTR1B LTR ERV1 701 826 0 * 22 56 0 0 chr3 91497988 91498024 -136026554 + AT_rich Low_complexity Low_complexity 1 36 0 1738 93 48 108 chr3 91498120 91498452 -136026126 + AluSp SINE Alu 1 312 -1 298 157 0 38 chr3 91499626 91499705 -136024873 - L1MA4A LINE L1 -1 6302 6228 1046 209 60 0 chr3 91499772 91500074 -136024504 + MER33 DNA MER1_type 5 324 0 238 300 0 0 chr3 91500422 91500472 -136024106 + L2 LINE L2 3219 3268 -4 180 0 0 0 chr3 91500942 91500962 -136023616 + (TA)n Simple_repeat Simple_repeat 2 21 0 1622 199 0 10 chr3 91501845 91502151 -136022427 - AluJo SINE Alu -7 305 3 202 402 53 20 chr3 91502410 91502485 -136022093 - L2 LINE L2 -1894 1420 1349 1510 210 38 32 chr3 91502485 91502857 -136021721 - MLT1A2 LTR MaLR 0 374 1 202 402 53 20 chr3 91502857 91503025 -136021553 - L2 LINE L2 -1965 1349 1169 2155 71 14 14 chr3 91503712 91503874 -136020704 - AluY SINE Alu -14 297 133 2503 39 3 7 chr3 91503874 91504183 -136020395 - AluY SINE Alu -3 308 1 2155 71 14 14 chr3 91504183 91504317 -136020261 - AluY SINE Alu -177 134 1 228 67 0 0 chr3 91504747 91504777 -136019801 + (T)n Simple_repeat Simple_repeat 1 30 0 180 111 0 0 chr3 91505422 91505449 -136019129 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr3 91505670 91505693 -136018885 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr3 91506030 91506056 -136018522 + AT_rich Low_complexity Low_complexity 1 26 0 20481 77 4 5 chr3 91507383 91510134 -136014444 - L1P LINE L1 -3388 2758 11 30 45 0 0 chr3 91510182 91510226 -136014352 + AT_rich Low_complexity Low_complexity 1 44 0 34 45 0 15 chr3 91512822 91512861 -136011717 + AT_rich Low_complexity Low_complexity 1 40 -25 2288 81 0 3 chr3 91512861 91513156 -136011422 - AluY SINE Alu -15 296 3 34 45 0 15 chr3 91513156 91513182 -136011396 + AT_rich Low_complexity Low_complexity 40 65 0 36 62 0 0 chr3 91514067 91514131 -136010447 + AT_rich Low_complexity Low_complexity 1 64 0 276 102 0 0 chr3 91514585 91514634 -136009944 + (TC)n Simple_repeat Simple_repeat 2 50 0 204 67 0 0 chr3 91514629 91514659 -136009919 + (TA)n Simple_repeat Simple_repeat 1 30 0 * 1286 126 21 0 chr3 91514965 91515156 -136009422 - MSTB LTR MaLR -48 378 184 24 32 0 0 chr3 91515156 91515187 -136009391 + AT_rich Low_complexity Low_complexity 1 31 0 1927 45 8 0 chr3 91515196 91515439 -136009139 - L1PA3 LINE L1 0 6155 5911 2808 21 24 0 chr3 91515439 91515770 -136008808 + L1PA3 LINE L1 5560 5898 -257 307 347 55 51 chr3 91515770 91516185 -136008393 - L2 LINE L2 -93 3220 2804 285 229 0 16 chr3 91516236 91516297 -136008281 - MER5A DNA MER1_type -120 69 10 24 53 0 0 chr3 91516475 91516513 -136008065 + AT_rich Low_complexity Low_complexity 1 38 0 503 197 0 41 chr3 91516526 91516648 -136007930 - L1PA16 LINE L1 -16 6150 6034 337 236 21 88 chr3 91516648 91516974 -136007604 - L1M4c LINE L1 -3888 2327 2050 407 289 163 32 chr3 91517003 91517280 -136007298 - MLT1J2 LTR MaLR -23 427 115 693 343 95 30 chr3 91517427 91517930 -136006648 - L2 LINE L2 -683 2631 2067 2157 121 0 0 chr3 91517930 91518228 -136006350 + AluSx SINE Alu 1 298 -14 693 343 95 30 chr3 91518228 91518430 -136006148 - L2 LINE L2 -1247 2067 1880 369 304 32 24 chr3 91518431 91518556 -136006022 + MLT1G1 LTR MaLR 66 191 -399 479 270 45 53 chr3 91518563 91518856 -136005722 + MLT1G1 LTR MaLR 143 521 -69 420 171 34 23 chr3 91518857 91518945 -136005633 + MLT1A1 LTR MaLR 1 89 -339 566 234 92 38 chr3 91518976 91519160 -136005418 + MLT1A1 LTR MaLR 172 365 0 429 293 96 16 chr3 91519232 91519420 -136005158 - L2 LINE L2 -407 2907 2705 1003 64 0 0 chr3 91519873 91519998 -136004580 + AluSg/x SINE Alu 180 304 -8 1414 98 0 5 chr3 91521950 91522155 -136002423 - pTR5 LTR ERV1 -2046 392 189 25 51 0 0 chr3 91522801 91522840 -136001738 + AT_rich Low_complexity Low_complexity 1 39 0 23 33 0 0 chr3 91525128 91525158 -135999420 + AT_rich Low_complexity Low_complexity 1 30 0 366 397 7 0 chr3 91525931 91526072 -135998506 + MIR3 SINE MIR 58 199 -9 767 249 63 5 chr3 91526443 91526648 -135997930 - MER20 DNA MER1_type -2 217 1 989 175 55 0 chr3 91526715 91526898 -135997680 + L1PB4 LINE L1 5951 6143 -13 268 361 70 22 chr3 91528514 91528744 -135995834 + MIR SINE MIR 22 262 0 1887 124 84 22 chr3 91528796 91529118 -135995460 + THE1B LTR MaLR 23 364 0 2192 183 48 61 chr3 91529399 91529958 -135994620 + MER34B LTR ERV1 14 565 0 215 310 81 11 chr3 91530048 91530135 -135994443 - MIR SINE MIR -50 212 120 203 301 123 0 chr3 91530562 91530635 -135993943 - MIR SINE MIR -128 134 53 523 188 31 31 chr3 91532126 91532286 -135992292 - L1MA9 LINE L1 -2 6310 6151 22 0 0 0 chr3 91532347 91532369 -135992209 + AT_rich Low_complexity Low_complexity 1 22 0 597 184 29 0 chr3 91532369 91532472 -135992106 - U6 snRNA snRNA 0 107 2 366 280 90 20 chr3 91532677 91532938 -135991640 + L1ME LINE L1 1804 2034 -867 562 207 42 7 chr3 91533052 91533187 -135991391 + MLT1C LTR MaLR 303 422 -45 302 314 44 25 chr3 91533697 91533856 -135990722 + L1ME LINE L1 2694 2855 -3685 479 291 86 58 chr3 91533869 91534264 -135990314 - MLT1J LTR MaLR -7 504 99 359 263 42 0 chr3 91534336 91534431 -135990147 + L1ME LINE L1 2866 2964 -3576 229 174 26 52 chr3 91534456 91534571 -135990007 + (TA)n Simple_repeat Simple_repeat 1 112 0 25 83 0 0 chr3 91534776 91534836 -135989742 + AT_rich Low_complexity Low_complexity 1 60 0 584 335 8 0 chr3 91535144 91535395 -135989183 + L1ME LINE L1 3973 4225 -2315 857 206 0 12 chr3 91535506 91535676 -135988902 - AluJo SINE Alu -30 282 115 365 339 46 29 chr3 91535678 91535917 -135988661 + L1ME LINE L1 4527 4769 -1771 240 250 134 9 chr3 91535999 91536111 -135988467 + L1ME LINE L1 4861 4986 -1554 240 35 0 0 chr3 91536509 91536538 -135988040 + (TAA)n Simple_repeat Simple_repeat 2 30 0 281 295 23 0 chr3 91536617 91536746 -135987832 + L1ME LINE L1 5532 5663 -877 299 299 69 6 chr3 91536955 91537129 -135987449 + L1ME LINE L1 5955 6139 -419 22 0 0 0 chr3 91537226 91537248 -135987330 + AT_rich Low_complexity Low_complexity 1 22 0 184 256 24 49 chr3 91538074 91538156 -135986422 + L2 LINE L2 1661 1740 -1574 3966 218 30 21 chr3 91541625 91543533 -135981045 - L1MB4 LINE L1 -15 6165 4240 306 0 0 0 chr3 91543535 91543569 -135981009 + (TA)n Simple_repeat Simple_repeat 1 34 0 942 237 0 0 chr3 91543769 91543959 -135980619 - L1M3 LINE L1 -477 5706 5517 303 71 0 0 chr3 91543960 91544002 -135980576 + (TA)n Simple_repeat Simple_repeat 2 43 0 1054 243 0 8 chr3 91544002 91544241 -135980337 - L1MB4 LINE L1 -1922 4224 3988 1268 227 40 9 chr3 91544249 91544571 -135980007 - L1MB4 LINE L1 -2378 3768 3437 646 242 0 0 chr3 91545246 91545378 -135979200 - FLAM_A SINE Alu -1 132 1 615 198 0 9 chr3 91546233 91546349 -135978229 - L1PA16 LINE L1 -303 5863 5749 22 70 0 0 chr3 91546484 91546527 -135978051 + AT_rich Low_complexity Low_complexity 1 43 0 3813 164 28 0 chr3 91546764 91547455 -135977123 - L1PA16 LINE L1 -3 6163 5454 259 308 103 27 chr3 91548810 91548956 -135975622 - MER5A DNA MER1_type 0 189 33 186 133 0 0 chr3 91549227 91549257 -135975321 + (GAA)n Simple_repeat Simple_repeat 2 31 0 2216 113 0 0 chr3 91549371 91549681 -135974897 + AluY SINE Alu 1 310 -1 444 306 116 47 chr3 91550791 91551066 -135973512 - L2 LINE L2 -9 3304 3011 615 165 6 25 chr3 91552548 91552725 -135971853 + MER2 DNA MER2_type 1 210 -135 227 367 0 0 chr3 91552753 91552832 -135971746 + MER2 DNA MER2_type 267 345 0 24 0 0 0 chr3 91553017 91553041 -135971537 + AT_rich Low_complexity Low_complexity 1 24 0 449 306 103 52 chr3 91553483 91553992 -135970586 + ERVL LTR ERVL 3939 4447 -1207 2402 87 59 11 chr3 91554121 91554479 -135970099 - THE1C LTR MaLR 0 375 1 2117 91 97 26 chr3 91554830 91555180 -135969398 + THE1C LTR MaLR 1 375 0 1707 66 0 0 chr3 91555427 91555653 -135968925 - L1PA5 LINE L1 0 6154 5929 304 329 87 25 chr3 91557025 91557186 -135967392 - MIR SINE MIR -72 190 20 292 169 0 22 chr3 91557305 91557394 -135967184 + (TA)n Simple_repeat Simple_repeat 2 88 0 315 0 0 0 chr3 91557428 91557463 -135967115 + (CA)n Simple_repeat Simple_repeat 2 36 0 1003 183 98 98 chr3 91557463 91557748 -135966830 - MLT1A1 LTR MaLR -70 295 11 22 80 0 0 chr3 91557749 91557799 -135966779 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr3 91559398 91559419 -135965159 + AT_rich Low_complexity Low_complexity 1 21 0 457 329 85 25 chr3 91560128 91560447 -135964131 + L2 LINE L2 1804 2141 -1173 3971 232 23 12 chr3 91560605 91561565 -135963013 - L1PA13 LINE L1 -4633 2154 1185 393 332 39 62 chr3 91561593 91561849 -135962729 - L1PA13 LINE L1 -5947 840 591 222 313 60 48 chr3 91561998 91562164 -135962414 - L2 LINE L2 -438 2876 2709 249 83 0 0 chr3 91562165 91562201 -135962377 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2302 56 7 7 chr3 91562201 91562505 -135962073 - L1PA5 LINE L1 -11 6143 5840 834 267 107 30 chr3 91562660 91563101 -135961477 - MLT1E LTR MaLR -3 590 98 241 288 68 38 chr3 91563153 91563285 -135961293 - MLT1E-int LTR MaLR 0 1371 1236 497 213 101 57 chr3 91563335 91563494 -135961084 + MLT1H1 LTR MaLR 412 553 -2 303 104 0 0 chr3 91564386 91564434 -135960144 + (TC)n Simple_repeat Simple_repeat 2 49 0 235 274 29 20 chr3 91564434 91564536 -135960042 + L2 LINE L2 2149 2251 -1063 1830 109 25 14 chr3 91564795 91565080 -135959498 - AluSc SINE Alu -21 288 1 263 247 27 82 chr3 91565893 91566046 -135958532 + MIR SINE MIR 36 180 -28 203 130 0 22 chr3 91566129 91566175 -135958403 + (TAA)n Simple_repeat Simple_repeat 1 45 0 707 281 39 0 chr3 91566206 91566384 -135958194 - MIR SINE MIR -73 189 5 234 260 83 10 chr3 91567269 91567365 -135957213 - MLT1K LTR MaLR -158 430 328 230 150 67 17 chr3 91568805 91568865 -135955713 - L1ME LINE L1 -687 5434 5372 4698 187 44 13 chr3 91569818 91571213 -135953365 + L1MA8 LINE L1 4858 6291 0 202 344 111 0 chr3 91571605 91571695 -135952883 - L2 LINE L2 -20 3252 3153 185 323 20 94 chr3 91571854 91572055 -135952523 - L2 LINE L2 -261 3011 2826 532 348 131 20 chr3 91572666 91573278 -135951300 - L2 LINE L2 -829 2485 1806 202 368 103 0 chr3 91574321 91574476 -135950102 + MIR SINE MIR 36 206 -56 621 23 35 0 chr3 91575818 91575905 -135948673 + (TAGA)n Simple_repeat Simple_repeat 4 93 0 27 0 0 0 chr3 91576020 91576047 -135948531 + AT_rich Low_complexity Low_complexity 1 27 0 267 91 30 15 chr3 91576047 91576113 -135948465 + (TTAA)n Simple_repeat Simple_repeat 1 67 0 21 36 0 0 chr3 91576120 91576148 -135948430 + AT_rich Low_complexity Low_complexity 1 28 0 249 263 105 40 chr3 91576855 91576931 -135947647 + L2 LINE L2 3199 3279 -34 21 0 0 0 chr3 91576959 91576980 -135947598 + AT_rich Low_complexity Low_complexity 1 21 0 20351 51 3 0 chr3 91577049 91580406 -135944172 - L1PA5 LINE L1 -8 6146 2786 655 319 72 24 chr3 91580602 91580975 -135943603 + L2 LINE L2 2334 2724 -590 4120 62 2 2 chr3 91582923 91583453 -135941125 - L1PA7 LINE L1 -8 6146 5617 3507 77 2 0 chr3 91583475 91583927 -135940651 - MLT2A2 LTR ERVL 0 453 1 282 340 128 6 chr3 91583932 91584088 -135940490 + L3 LINE CR1 1400 1574 -3 2293 111 46 8 chr3 91584403 91584754 -135939824 - THE1B LTR MaLR 0 364 1 2148 196 106 7 chr3 91584756 91585220 -135939358 - LTR53 LTR ERVL -9 510 1 757 317 166 26 chr3 91585825 91586433 -135938145 + L3 LINE CR1 260 952 -625 192 200 0 0 chr3 91586640 91586680 -135937898 + (TA)n Simple_repeat Simple_repeat 1 40 0 2402 50 7 7 chr3 91586681 91586980 -135937598 - AluY SINE Alu -12 299 1 210 158 0 0 chr3 91587511 91587549 -135937029 + T-rich Low_complexity Low_complexity 1 38 0 189 0 0 0 chr3 91590826 91590847 -135933731 + (CAAG)n Simple_repeat Simple_repeat 2 22 0 331 323 57 42 chr3 91591359 91591551 -135933027 - MIR3 SINE MIR -13 195 1 4651 237 41 38 chr3 91592065 91593614 -135930964 - Looper DNA T2_type -5 1553 1 7471 200 32 10 chr3 91593906 91596120 -135928458 - L1PA15 LINE L1 -3 6813 4542 2226 75 3 3 chr3 91596120 91596413 -135928165 + AluY SINE Alu 1 293 -18 7471 200 32 10 chr3 91596413 91596705 -135927873 - L1PA15 LINE L1 -2274 4542 4258 6027 60 14 1 chr3 91596714 91597493 -135927085 - L1PA7 LINE L1 -2 6152 5364 984 110 0 0 chr3 91597485 91597630 -135926948 + L1PA7 LINE L1 5207 5351 -795 * 6580 248 42 11 chr3 91597641 91599582 -135924996 - L1PA15 LINE L1 -2546 4251 2251 1983 250 14 28 chr3 91599746 91600242 -135924336 - L1PA15 LINE L1 -6298 489 1 361 273 31 8 chr3 91601107 91601235 -135923343 - MER94 DNA DNA -3 131 1 5334 119 197 85 chr3 91602637 91604035 -135920543 - pTR5 LTR ERV1 -144 2294 741 2145 118 18 77 chr3 91604839 91605230 -135919348 - L1PB2 LINE L1 -2 6149 5782 390 116 31 54 chr3 91605230 91605496 -135919082 + (TA)n Simple_repeat Simple_repeat 1 259 0 2068 111 12 36 chr3 91605497 91605829 -135918749 - L1PB2 LINE L1 -363 5788 5465 1344 252 87 16 chr3 91607491 91607916 -135916662 - MER39 LTR ERV1 -20 687 233 298 200 67 13 chr3 91608367 91608442 -135916136 + MIR SINE MIR 68 146 -116 21 71 0 0 chr3 91608582 91608624 -135915954 + AT_rich Low_complexity Low_complexity 1 42 0 27 49 0 0 chr3 91608809 91608850 -135915728 + AT_rich Low_complexity Low_complexity 1 41 0 567 275 195 0 chr3 91608989 91609189 -135915389 + MIR SINE MIR 3 241 -21 191 280 88 32 chr3 91609554 91609679 -135914899 - L2 LINE L2 -3 3310 3179 285 229 16 16 chr3 91610531 91610653 -135913925 + GA-rich Low_complexity Low_complexity 1 122 0 184 342 162 0 chr3 91610944 91611055 -135913523 - L3b LINE CR1 -32 1551 1423 3093 140 4 4 chr3 91611861 91612347 -135912231 - MER66B LTR ERV1 0 486 1 200 197 167 0 chr3 91612412 91612478 -135912100 - MIR SINE MIR -62 200 124 295 232 21 42 chr3 91612941 91613036 -135911542 + (CATATA)n Simple_repeat Simple_repeat 6 98 0 21 36 0 0 chr3 91613840 91613868 -135910710 + AT_rich Low_complexity Low_complexity 1 28 0 234 317 82 50 chr3 91615705 91616008 -135908570 + L1ME1 LINE L1 18 330 -6210 232 281 101 34 chr3 91616308 91616546 -135908032 + L1ME1 LINE L1 702 955 -5575 708 292 54 56 chr3 91616622 91617160 -135907418 + L1ME1 LINE L1 934 1468 -5064 2405 261 92 13 chr3 91617174 91618156 -135906422 + L1ME1 LINE L1 4490 5548 -992 2023 277 56 11 chr3 91618224 91618866 -135905712 + L1ME1 LINE L1 5870 6540 -20 254 361 62 23 chr3 91618934 91619064 -135905514 - L2 LINE L2 0 3272 3138 1962 72 4 0 chr3 91619252 91619502 -135905076 - AluSc SINE Alu -2 307 57 231 146 0 0 chr3 91619551 91619592 -135904986 + (TA)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr3 91621169 91621192 -135903386 + AT_rich Low_complexity Low_complexity 1 23 0 238 328 109 0 chr3 91621730 91621867 -135902711 + MIR SINE MIR 3 154 -54 24 0 0 0 chr3 91622182 91622206 -135902372 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr3 91622348 91622377 -135902201 + AT_rich Low_complexity Low_complexity 1 29 0 213 94 0 0 chr3 91622505 91622537 -135902041 + (GGA)n Simple_repeat Simple_repeat 2 33 0 1339 189 38 17 chr3 91622942 91623233 -135901345 + MLT2D LTR ERVL 1 297 -117 516 273 70 75 chr3 91623283 91623671 -135900907 + L1MEd LINE L1 791 1176 -4943 22 0 0 0 chr3 91624124 91624146 -135900432 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 91625141 91625163 -135899415 + AT_rich Low_complexity Low_complexity 1 22 0 1457 271 38 24 chr3 91625266 91625764 -135898814 + MLT1D LTR MaLR 1 505 0 207 232 18 18 chr3 91626122 91626178 -135898400 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 323 333 60 25 chr3 91626531 91626732 -135897846 + L1ME3A LINE L1 5718 5925 -245 388 288 88 19 chr3 91626823 91626983 -135897595 - L2 LINE L2 -4 3309 3139 25 31 0 0 chr3 91627217 91627249 -135897329 + AT_rich Low_complexity Low_complexity 1 32 0 23 68 0 0 chr3 91627300 91627344 -135897234 + AT_rich Low_complexity Low_complexity 1 44 0 639 313 71 18 chr3 91627398 91627832 -135896746 + L1ME4a LINE L1 5585 6041 -80 3651 311 119 24 chr3 91627966 91630033 -135894545 + L2 LINE L2 1062 3313 0 1877 59 30 4 chr3 91630204 91630474 -135894104 + AluY SINE Alu 1 277 -34 2263 82 0 0 chr3 91731486 91731765 -135792813 - AluY SINE Alu -32 279 1 209 234 0 21 chr3 91732035 91732082 -135792496 + L2 LINE L2 3224 3269 -44 234 105 0 0 chr3 91732086 91732124 -135792454 + (GAAA)n Simple_repeat Simple_repeat 2 39 0 2016 133 0 0 chr3 91732186 91732465 -135792113 - AluSx SINE Alu -33 279 1 454 214 0 0 chr3 91733718 91733802 -135790776 + MER45 DNA AcHobo 1498 1581 0 3001 198 41 4 chr3 91733897 91734575 -135790003 + MER45R DNA AcHobo 516 1218 -363 877 81 0 8 chr3 91734585 91734709 -135789869 - L1PA10 LINE L1 0 6168 6046 2278 95 42 17 chr3 91734722 91735081 -135789497 + L1P4 LINE L1 5254 5621 -547 1272 206 60 26 chr3 91735084 91735312 -135789266 + MER45R DNA AcHobo 1214 1460 -121 1777 138 82 28 chr3 91735312 91735668 -135788910 - THE1C LTR MaLR 0 375 1 1272 206 60 26 chr3 91735668 91735788 -135788790 + MER45R DNA AcHobo 1460 1574 -7 1368 189 39 28 chr3 91737155 91737441 -135787137 + AluJb SINE Alu 1 289 -23 1386 187 46 78 chr3 91737669 91738025 -135786553 + MLT1A1 LTR MaLR 3 365 0 2171 103 3 35 chr3 91738096 91738415 -135786163 - AluSq SINE Alu -4 309 1 505 299 54 54 chr3 91738518 91738816 -135785762 - L2 LINE L2 0 3313 3016 22 0 0 0 chr3 91741437 91741459 -135783119 + AT_rich Low_complexity Low_complexity 1 22 0 224 359 87 0 chr3 91741571 91741663 -135782915 - MIR3 SINE MIR -31 177 78 876 204 6 12 chr3 91741816 91741988 -135782590 - AluJb SINE Alu -20 292 122 2372 84 0 3 chr3 91743039 91743348 -135781230 - AluSc SINE Alu -1 308 1 189 398 57 16 chr3 91743796 91743919 -135780659 - MIR3 SINE MIR -78 130 3 647 174 47 34 chr3 91744232 91744381 -135780197 - L1PB2 LINE L1 0 6151 6001 1240 169 50 46 chr3 91744583 91744843 -135779735 - AluJo SINE Alu -46 266 6 2069 116 0 0 chr3 91745654 91745938 -135778640 + AluSx SINE Alu 1 284 -28 342 0 0 0 chr3 91745938 91745976 -135778602 + (CA)n Simple_repeat Simple_repeat 2 39 0 367 316 38 0 chr3 91746514 91746647 -135777931 - MLT1L LTR MaLR -58 557 420 323 171 71 143 chr3 91746671 91746811 -135777767 - L2 LINE L2 0 3313 3184 772 273 55 31 chr3 91747046 91747302 -135777276 + MIR SINE MIR 1 262 0 189 171 0 0 chr3 91749842 91749877 -135774701 + T-rich Low_complexity Low_complexity 1 35 0 430 374 53 24 chr3 91750652 91750989 -135773589 + L1M4 LINE L1 3775 4121 -2025 335 275 122 88 chr3 91751623 91751943 -135772635 + L1ME4a LINE L1 5689 6019 -102 25 0 0 0 chr3 91752233 91752258 -135772320 + AT_rich Low_complexity Low_complexity 1 25 0 1232 130 0 0 chr3 91752272 91752441 -135772137 - AluSp SINE Alu -8 305 137 374 291 131 21 chr3 91752479 91752716 -135771862 - L2 LINE L2 -4 3309 3047 1910 156 31 19 chr3 91753567 91753927 -135770651 + THE1B LTR MaLR 1 364 0 333 245 176 0 chr3 91754134 91754236 -135770342 + L2 LINE L2 3193 3312 -1 21 0 0 0 chr3 91754567 91754588 -135769990 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3 91755020 91755052 -135769526 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr3 91755419 91755448 -135769130 + AT_rich Low_complexity Low_complexity 1 29 0 32 43 0 0 chr3 91758408 91758454 -135766124 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr3 91758497 91758525 -135766053 + AT_rich Low_complexity Low_complexity 1 28 0 239 219 0 41 chr3 91758706 91758779 -135765799 + GA-rich Low_complexity Low_complexity 2 71 0 2392 145 5 2 chr3 91759930 91760337 -135764241 + L1MA4A LINE L1 5896 6303 0 1276 325 108 15 chr3 91760789 91761462 -135763116 - L2 LINE L2 -1741 1573 838 852 339 70 35 chr3 91761739 91762365 -135762213 + L2 LINE L2 53 700 -2614 523 303 118 39 chr3 91762367 91763084 -135761494 + L1M4 LINE L1 3433 4206 -1940 525 345 55 13 chr3 91763462 91763697 -135760881 + MIR SINE MIR 3 247 -15 444 341 93 31 chr3 91763669 91764283 -135760295 + L2 LINE L2 2604 3307 -6 * 1772 165 0 0 chr3 91765540 91765825 -135758753 - AluSx SINE Alu -27 285 1 23 33 0 0 chr3 91766503 91766533 -135758045 + AT_rich Low_complexity Low_complexity 1 30 0 214 362 149 0 chr3 91766563 91766657 -135757921 - MIR3 SINE MIR -52 156 49 225 0 0 0 chr3 91766690 91766715 -135757863 + (A)n Simple_repeat Simple_repeat 1 25 0 712 217 133 6 chr3 91766916 91767096 -135757482 + MER3 DNA MER1_type 7 209 0 23 0 0 0 chr3 91767633 91767656 -135756922 + AT_rich Low_complexity Low_complexity 1 23 0 35 24 0 0 chr3 91769147 91769189 -135755389 + AT_rich Low_complexity Low_complexity 1 42 0 372 356 52 0 chr3 91769469 91769584 -135754994 + L2 LINE L2 3138 3258 -14 300 27 0 0 chr3 91771781 91771818 -135752760 + (CA)n Simple_repeat Simple_repeat 2 38 0 192 150 50 10 chr3 91771866 91771966 -135752612 + (CA)n Simple_repeat Simple_repeat 1 104 0 426 252 183 8 chr3 91774511 91774642 -135749936 + MER5A DNA MER1_type 36 189 0 705 165 85 30 chr3 91775783 91775947 -135748631 + MLT1B LTR MaLR 1 173 -217 277 286 0 13 chr3 91775971 91776048 -135748530 + CT-rich Low_complexity Low_complexity 2 77 0 697 243 49 0 chr3 91776055 91776240 -135748338 + MLT1B LTR MaLR 197 390 0 2078 143 0 0 chr3 91777217 91777510 -135747068 - AluSx SINE Alu -15 297 5 1954 215 91 27 chr3 91777763 91777953 -135746625 + MLT1D LTR MaLR 1 178 -327 1967 151 3 0 chr3 91777953 91778244 -135746334 + AluSx SINE Alu 1 292 -20 1954 215 91 27 chr3 91778244 91778528 -135746050 + MLT1D LTR MaLR 178 505 0 1113 176 47 111 chr3 91778542 91778929 -135745649 - MLT1A1 LTR MaLR 0 365 4 415 302 63 25 chr3 91779026 91779185 -135745393 + MIR3 SINE MIR 32 196 -12 597 202 0 0 chr3 91780177 91780286 -135744292 + FLAM_A SINE Alu 1 109 -33 240 35 0 0 chr3 91780294 91780304 -135744274 + (CGA)n Simple_repeat Simple_repeat 1 39 0 240 35 0 0 chr3 91780304 91780333 -135744245 + (CGA)n Simple_repeat Simple_repeat 3 31 0 26 0 0 0 chr3 91781118 91781144 -135743434 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr3 91781367 91781395 -135743183 + AT_rich Low_complexity Low_complexity 1 28 0 2811 7 0 0 chr3 91782324 91782634 -135741944 - AluYa5 SINE Alu -1 310 1 187 324 235 0 chr3 91783244 91783346 -135741232 - L2 LINE L2 -4 3268 3143 262 299 70 32 chr3 91783473 91783630 -135740948 - MER5B DNA MER1_type -15 163 1 2545 39 0 0 chr3 91784259 91784566 -135740012 + AluY SINE Alu 1 307 -4 612 278 62 24 chr3 91784707 91784916 -135739662 + MIR SINE MIR 42 258 -4 21 0 0 0 chr3 91787171 91787192 -135737386 + AT_rich Low_complexity Low_complexity 1 21 0 1096 193 63 38 chr3 91788416 91788732 -135735846 + MER5C DNA MER1_type 1 324 0 194 312 184 9 chr3 91790195 91790304 -135734274 - L2 LINE L2 -8 3264 3137 656 152 0 0 chr3 91790442 91790547 -135734031 - AluJb SINE Alu 0 312 208 280 379 63 22 chr3 91790588 91790946 -135733632 - L2 LINE L2 -237 3035 2665 266 200 20 0 chr3 91791119 91791169 -135733409 + MER34 LTR ERV1 1 51 -491 743 253 64 78 chr3 91791201 91791609 -135732969 + MER39 LTR ERV1 306 707 0 583 226 21 86 chr3 91791618 91791804 -135732774 + MLT1J LTR MaLR 78 251 -260 255 133 0 0 chr3 91791804 91791849 -135732729 + (TTCC)n Simple_repeat Simple_repeat 3 47 0 21 0 0 0 chr3 91791959 91791980 -135732598 + AT_rich Low_complexity Low_complexity 1 21 0 412 366 56 21 chr3 91792192 91792479 -135732099 - L2 LINE L2 -973 2341 2045 468 168 54 195 chr3 91792495 91792680 -135731898 - MIR SINE MIR -13 249 91 210 71 0 0 chr3 91792986 91793014 -135731564 + (CA)n Simple_repeat Simple_repeat 2 29 0 276 327 50 10 chr3 91793470 91793571 -135731007 + MIR SINE MIR 39 143 -65 252 323 90 8 chr3 91793721 91793854 -135730724 + MIR SINE MIR 65 208 -54 1475 190 39 7 chr3 91795347 91795631 -135728947 + AluSx SINE Alu 3 295 -17 313 380 42 23 chr3 91796039 91796255 -135728323 - L2 LINE L2 -472 2842 2623 2327 50 0 0 chr3 91796638 91796919 -135727659 + AluY SINE Alu 15 295 -16 676 276 7 0 chr3 91797200 91797352 -135727226 + MER5A DNA MER1_type 31 183 -6 766 219 21 55 chr3 91797369 91797606 -135726972 + L1MA9 LINE L1 6046 6274 -38 850 287 49 14 chr3 91799424 91799832 -135724746 + L1MC4a LINE L1 5523 5831 -528 411 56 0 0 chr3 91799835 91799889 -135724689 + (GA)n Simple_repeat Simple_repeat 2 55 0 2820 10 0 0 chr3 91802139 91802451 -135722127 - AluYb8 SINE Alu -6 312 1 997 163 24 24 chr3 91802533 91802742 -135721836 + MER3 DNA MER1_type 1 209 0 239 355 130 0 chr3 91802927 91803065 -135721513 - MIR3 SINE MIR -20 188 33 564 263 79 83 chr3 91803194 91803460 -135721118 - LTR16C LTR ERVL -23 468 204 1871 122 0 22 chr3 91803730 91804000 -135720578 - AluSc SINE Alu -45 264 1 21 82 0 0 chr3 91804311 91804360 -135720218 + AT_rich Low_complexity Low_complexity 1 49 0 1623 193 45 8 chr3 91805029 91805381 -135719197 + MLT1A1 LTR MaLR 1 365 0 459 259 57 19 chr3 91805446 91805604 -135718974 - MER63A DNA MER1_type -38 172 9 23 54 0 0 chr3 91805936 91805973 -135718605 + AT_rich Low_complexity Low_complexity 1 37 0 333 326 71 41 chr3 91807892 91808186 -135716392 + L3 LINE CR1 565 867 -710 23 0 0 0 chr3 91808969 91808992 -135715586 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr3 91809234 91809259 -135715319 + AT_rich Low_complexity Low_complexity 1 25 0 305 316 169 0 chr3 91810108 91810244 -135714334 - MER5A DNA MER1_type 0 189 31 49 76 0 0 chr3 91810620 91810725 -135713853 + AT_rich Low_complexity Low_complexity 1 105 0 24 32 0 0 chr3 91811177 91811208 -135713370 + AT_rich Low_complexity Low_complexity 1 31 0 212 372 7 36 chr3 91811336 91811473 -135713105 - MIR3 SINE MIR -63 145 13 216 305 62 62 chr3 91811490 91811618 -135712960 + MIR SINE MIR 119 246 -16 238 80 40 0 chr3 91813230 91813280 -135711298 + (TA)n Simple_repeat Simple_repeat 1 52 0 2338 75 0 3 chr3 91813281 91813574 -135711004 - AluY SINE Alu -19 292 1 792 181 40 74 chr3 91813629 91813928 -135710650 + L1 LINE L1 3058 3346 -2800 1017 197 0 0 chr3 91814033 91814211 -135710367 + L1 LINE L1 3707 3884 -2262 298 133 0 0 chr3 91814206 91814251 -135710327 + L1MA5A LINE L1 5841 5885 -412 * 349 320 51 64 chr3 91814701 91814935 -135709643 - MIR SINE MIR -27 235 5 2250 114 11 6 chr3 91815245 91815597 -135708981 - L1PA14 LINE L1 -2 6159 5806 901 277 58 40 chr3 91815686 91816133 -135708445 + L1MC4 LINE L1 7588 8042 0 1529 226 21 31 chr3 91816626 91817047 -135707531 + L1M4 LINE L1 2514 2930 -3216 181 75 94 0 chr3 91818206 91818259 -135706319 + (TA)n Simple_repeat Simple_repeat 1 58 0 22 56 0 0 chr3 91818679 91818715 -135705863 + AT_rich Low_complexity Low_complexity 1 36 0 1218 171 122 23 chr3 91818957 91819057 -135705521 + AluJo SINE Alu 23 112 -495 1663 158 25 28 chr3 91819057 91819368 -135705210 + AluSx SINE Alu 1 310 0 1218 171 122 23 chr3 91819368 91819576 -135705002 + AluJo SINE Alu 112 298 -309 1158 54 0 32 chr3 91819576 91819762 -135704816 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1218 171 122 23 chr3 91819762 91819825 -135704753 + AluJo SINE Alu 298 607 0 203 250 12 25 chr3 91819980 91820060 -135704518 + GA-rich Low_complexity Low_complexity 5 83 0 239 331 108 0 chr3 91820520 91820614 -135703964 - MIR3 SINE MIR -31 177 73 1408 195 3 52 chr3 91822739 91823047 -135701531 - AluJo SINE Alu -19 293 1 2331 106 3 0 chr3 91823775 91824132 -135700446 + AluSq SINE Alu 1 358 0 945 66 0 0 chr3 91824251 91824373 -135700205 - L1PA7 LINE L1 0 6154 6033 28 79 0 0 chr3 91825373 91825436 -135699142 + AT_rich Low_complexity Low_complexity 1 63 0 224 272 109 43 chr3 91825451 91825543 -135699035 - MIR SINE MIR -13 249 152 193 387 77 7 chr3 91825653 91825808 -135698770 - L3b LINE CR1 -227 1356 1191 727 267 170 56 chr3 91828438 91829131 -135695447 + LTR41 LTR ERVL 1 772 -1 478 169 0 0 chr3 91829330 91829413 -135695165 + AluS SINE Alu 1 83 -229 555 247 116 65 chr3 91829446 91829830 -135694748 + MLT1J LTR MaLR 60 480 -8 24 32 0 0 chr3 91829987 91830018 -135694560 + AT_rich Low_complexity Low_complexity 1 31 0 381 303 0 0 chr3 91830397 91830519 -135694059 + L1MC4a LINE L1 6700 6821 -987 283 262 12 0 chr3 91831038 91831122 -135693456 + MIR SINE MIR 178 262 0 368 246 18 55 chr3 91831320 91831430 -135693148 - L2 LINE L2 -47 3266 3161 259 185 54 76 chr3 91831730 91831822 -135692756 - MER97c DNA MER1_type? -917 173 84 21 0 0 0 chr3 91831949 91831970 -135692608 + AT_rich Low_complexity Low_complexity 1 21 0 268 262 71 36 chr3 91831971 91832055 -135692523 - MIR SINE MIR -14 248 162 22 0 0 0 chr3 91833241 91833263 -135691315 + AT_rich Low_complexity Low_complexity 1 22 0 284 335 231 12 chr3 91834314 91834565 -135690013 + L2 LINE L2 2967 3272 0 5882 139 38 17 chr3 91834653 91836118 -135688460 + L1PB1 LINE L1 4646 6151 0 4172 78 17 5 chr3 91836399 91836980 -135687598 - L1PA7 LINE L1 -7 6147 5560 243 0 0 0 chr3 91840682 91840709 -135683869 + (A)n Simple_repeat Simple_repeat 1 27 0 24 32 0 0 chr3 91841288 91841319 -135683259 + AT_rich Low_complexity Low_complexity 1 31 0 1952 128 0 17 chr3 91841446 91841734 -135682844 + AluSc SINE Alu 1 283 -26 885 45 0 0 chr3 91841734 91841844 -135682734 + (GGAA)n Simple_repeat Simple_repeat 3 112 0 243 400 0 0 chr3 91842091 91842181 -135682397 - L3 LINE CR1 -475 1102 1013 186 372 18 26 chr3 91843269 91843382 -135681196 + MIR SINE MIR 37 148 -114 1435 270 91 38 chr3 91843988 91844537 -135680041 + MLT1E LTR MaLR 14 591 -2 464 239 33 106 chr3 91845053 91845233 -135679345 + L2 LINE L2 3142 3308 -5 22 35 0 0 chr3 91845807 91845836 -135678742 + AT_rich Low_complexity Low_complexity 1 29 0 312 27 0 0 chr3 91847389 91847426 -135677152 + (CA)n Simple_repeat Simple_repeat 2 38 0 243 0 0 0 chr3 91847935 91847962 -135676616 + (CA)n Simple_repeat Simple_repeat 1 27 0 237 180 0 0 chr3 91848093 91848143 -135676435 + (TA)n Simple_repeat Simple_repeat 2 51 0 260 292 0 42 chr3 91848498 91848570 -135676008 - L2 LINE L2 0 3272 3204 191 174 232 43 chr3 91848825 91848894 -135675684 + MIR SINE MIR 181 262 0 * 373 348 37 16 chr3 91848889 91849076 -135675502 - MIR SINE MIR -71 191 1 197 270 281 45 chr3 91849227 91849586 -135674992 + L2 LINE L2 2869 3312 -1 498 233 0 0 chr3 91850067 91850200 -135674378 + CT-rich Low_complexity Low_complexity 4 136 0 239 152 0 61 chr3 91850211 91850277 -135674301 + CT-rich Low_complexity Low_complexity 2 63 0 2459 40 3 3 chr3 91850966 91851264 -135673314 - AluY SINE Alu -13 298 1 3862 169 36 4 chr3 91851420 91852114 -135672464 + Tigger1 DNA MER2_type 8 723 -1695 13509 162 20 59 chr3 91852168 91854472 -135670106 - L1MA3 LINE L1 -30 7694 5301 2097 80 0 0 chr3 91854472 91854748 -135669830 - AluY SINE Alu 0 311 36 13509 162 20 59 chr3 91854748 91854797 -135669781 - L1MA3 LINE L1 -2423 5301 5252 1620 191 3 7 chr3 91854797 91855106 -135669472 - AluJb SINE Alu 0 308 1 13509 162 20 59 chr3 91855106 91855386 -135669192 - L1MA3 LINE L1 -2472 5252 4963 704 52 10 0 chr3 91855386 91855483 -135669095 + (TTTC)n Simple_repeat Simple_repeat 2 99 0 13509 162 20 59 chr3 91855483 91857259 -135667319 - L1MA3 LINE L1 -2761 4963 3462 354 45 0 0 chr3 91857259 91857303 -135667275 + (TTCC)n Simple_repeat Simple_repeat 3 46 0 504 126 17 25 chr3 91857314 91857433 -135667145 - L1MA3 LINE L1 -4067 3498 3381 7866 149 72 4 chr3 91857436 91858834 -135665744 + Tigger1 DNA MER2_type 925 2418 0 188 311 98 0 chr3 91858869 91858930 -135665648 - MIR SINE MIR -86 176 110 225 274 57 40 chr3 91859734 91859858 -135664720 - L2 LINE L2 -1252 2062 1937 22 0 0 0 chr3 91860185 91860207 -135664371 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 91860514 91860535 -135664043 + AT_rich Low_complexity Low_complexity 1 21 0 419 218 11 0 chr3 91860959 91861046 -135663532 + MER2 DNA MER2_type 1 88 -257 21 0 0 0 chr3 91861164 91861185 -135663393 + AT_rich Low_complexity Low_complexity 1 21 0 795 214 115 45 chr3 91861386 91861629 -135662949 + MER2 DNA MER2_type 86 345 0 748 297 121 40 chr3 91861630 91862102 -135662476 - MLT1F LTR MaLR -32 510 1 670 258 57 24 chr3 91862361 91862570 -135662008 - MIR SINE MIR -42 220 5 1173 182 5 14 chr3 91862714 91862934 -135661644 + Tigger5 DNA MER2_type 2106 2323 0 26 0 0 0 chr3 91865163 91865189 -135659389 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 91865625 91865646 -135658932 + AT_rich Low_complexity Low_complexity 1 21 0 970 241 58 40 chr3 91865937 91866009 -135658569 + MER58B DNA MER1_type 5 74 -2346 338 0 24 0 chr3 91866009 91866051 -135658527 + (TG)n Simple_repeat Simple_repeat 2 44 0 970 241 58 40 chr3 91866051 91866157 -135658421 + MER58B DNA MER1_type 74 177 -2243 1718 170 149 11 chr3 91866157 91866533 -135658045 + MSTA LTR MaLR 1 428 0 970 241 58 40 chr3 91866533 91866681 -135657897 + MER58B DNA MER1_type 177 338 -3 2043 159 86 8 chr3 91866695 91867092 -135657486 + MSTA LTR MaLR 1 428 0 28 48 0 0 chr3 91867773 91867815 -135656763 + AT_rich Low_complexity Low_complexity 1 42 0 2248 282 106 35 chr3 91868276 91871277 -135653301 + L1MA10 LINE L1 1 3000 -3210 1168 222 97 12 chr3 91871254 91871596 -135652982 + L1MA10 LINE L1 3455 3825 -2385 * 4011 188 22 70 chr3 91871698 91872705 -135651873 + L1MA10 LINE L1 5425 6382 -16 964 219 51 13 chr3 91872845 91873082 -135651496 - Tigger6 DNA MER2_type -717 366 121 21 71 0 0 chr3 91875711 91875753 -135648825 + AT_rich Low_complexity Low_complexity 1 42 0 195 155 169 70 chr3 91876338 91876409 -135648169 + MIR3 SINE MIR 125 202 -6 190 253 72 24 chr3 91876862 91876945 -135647633 - L3b LINE CR1 -336 1247 1161 21 57 0 0 chr3 91877162 91877197 -135647381 + AT_rich Low_complexity Low_complexity 1 35 0 263 222 12 0 chr3 91878318 91878399 -135646179 + (TA)n Simple_repeat Simple_repeat 2 83 0 24 0 0 0 chr3 91879009 91879033 -135645545 + AT_rich Low_complexity Low_complexity 1 24 0 481 409 11 99 chr3 91879338 91879622 -135644956 - Charlie5 DNA MER1_type 0 2622 2364 216 0 0 0 chr3 91881401 91881425 -135643153 + (CAT)n Simple_repeat Simple_repeat 2 25 0 266 198 6 0 chr3 91881426 91881480 -135643098 + MER5A DNA MER1_type 40 106 -82 193 200 0 0 chr3 91881845 91881885 -135642693 + L3b LINE CR1 1244 1283 -300 207 70 47 23 chr3 91882108 91882151 -135642427 + (TTATA)n Simple_repeat Simple_repeat 5 48 0 23 33 0 0 chr3 91882636 91882666 -135641912 + AT_rich Low_complexity Low_complexity 1 30 0 1103 239 99 65 chr3 91884858 91885393 -135639185 - MLT1H1 LTR MaLR -2 553 1 1202 160 0 10 chr3 91885661 91885867 -135638711 + L1PB4 LINE L1 5951 6154 -2 241 278 14 0 chr3 91886939 91887011 -135637567 + MER5A DNA MER1_type 10 82 -107 264 238 0 32 chr3 91887367 91887430 -135637148 + L2 LINE L2 3251 3311 -2 194 268 0 18 chr3 91887459 91887515 -135637063 - MIR SINE MIR -56 206 152 180 259 86 0 chr3 91888725 91888783 -135635795 - MIR SINE MIR -114 148 86 464 181 71 79 chr3 91889093 91889220 -135635358 + MER94 DNA DNA 8 133 -1 265 243 114 0 chr3 91890557 91890627 -135633951 - MIR3 SINE MIR -19 189 112 216 363 111 15 chr3 91890716 91890851 -135633727 - MIR3 SINE MIR -28 180 33 188 302 0 0 chr3 91891007 91891060 -135633518 - L2 LINE L2 -4 3268 3216 351 355 65 6 chr3 91891307 91891476 -135633102 + MIR3 SINE MIR 11 189 -19 217 388 0 0 chr3 91892528 91892595 -135631983 - L2 LINE L2 -9 3263 3197 243 274 55 75 chr3 91893327 91893473 -135631105 + MIR SINE MIR 47 189 -73 184 382 68 42 chr3 91895282 91895473 -135629105 + L2 LINE L2 3077 3272 0 27 49 0 0 chr3 91897305 91897346 -135627232 + AT_rich Low_complexity Low_complexity 1 41 0 474 235 34 0 chr3 91897871 91897990 -135626588 - MER103 DNA DNA -25 141 19 14556 49 8 6 chr3 91898240 91900867 -135623711 - L1PA5 LINE L1 0 6154 3517 21 71 0 0 chr3 91901040 91901082 -135623496 + AT_rich Low_complexity Low_complexity 1 42 0 22 88 0 0 chr3 91901406 91901463 -135623115 + AT_rich Low_complexity Low_complexity 1 57 0 724 249 98 44 chr3 91901567 91901997 -135622581 - L1ME4a LINE L1 -179 5942 5490 26 30 0 0 chr3 91902094 91902127 -135622451 + AT_rich Low_complexity Low_complexity 1 33 0 26 50 0 0 chr3 91902387 91902427 -135622151 + AT_rich Low_complexity Low_complexity 1 40 0 25 51 0 0 chr3 91903062 91903101 -135621477 + AT_rich Low_complexity Low_complexity 1 39 0 3566 86 8 0 chr3 91903552 91904040 -135620538 + L1PA10 LINE L1 5668 6159 -9 436 0 0 0 chr3 91904040 91904092 -135620486 - L1P LINE L1 -2363 3783 3732 6524 26 0 0 chr3 91904092 91904899 -135619679 + L1PA3 LINE L1 5389 6195 0 266 268 0 0 chr3 91904972 91905028 -135619550 + L3 LINE CR1 1219 1274 -303 23 0 0 0 chr3 91905896 91905919 -135618659 + AT_rich Low_complexity Low_complexity 1 23 0 371 183 56 0 chr3 91905959 91906030 -135618548 + MLT1B LTR MaLR 201 275 -115 1633 201 0 7 chr3 91906031 91906340 -135618238 + AluJo SINE Alu 2 308 -4 229 148 19 19 chr3 91906355 91906409 -135618169 + GA-rich Low_complexity Low_complexity 2 55 0 756 197 0 0 chr3 91906419 91906546 -135618032 + MLT1B LTR MaLR 260 386 -4 21 0 0 0 chr3 91907045 91907066 -135617512 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr3 91907792 91907831 -135616747 + AT_rich Low_complexity Low_complexity 1 39 0 326 316 117 84 chr3 91909420 91909438 -135615140 + L2 LINE L2 1452 1468 -1846 4734 36 10 2 chr3 91909438 91910015 -135614563 - L1PA3 LINE L1 0 6155 5574 326 316 117 84 chr3 91910015 91910474 -135614104 + L2 LINE L2 1468 1945 -1369 915 218 11 0 chr3 91910539 91910727 -135613851 + MER20 DNA MER1_type 30 219 0 374 250 44 73 chr3 91910770 91910906 -135613672 + L2 LINE L2 3173 3304 -9 1705 149 47 3 chr3 91910914 91911210 -135613368 - AluJb SINE Alu -1 311 3 2374 28 3 0 chr3 91912756 91913085 -135611493 - AluY SINE Alu 0 330 1 26 64 0 0 chr3 91913118 91913165 -135611413 + AT_rich Low_complexity Low_complexity 1 47 0 581 170 67 59 chr3 91913165 91913300 -135611278 - L1PA16 LINE L1 -33 6133 5998 1684 173 13 7 chr3 91913300 91913607 -135610971 - AluJb SINE Alu -3 309 1 2989 168 8 8 chr3 91913607 91914125 -135610453 - L1PA16 LINE L1 -127 6039 5522 643 242 0 0 chr3 91914683 91914811 -135609767 - MER94 DNA DNA -6 128 1 1167 189 27 127 chr3 91914919 91915321 -135609257 + MLT1A1 LTR MaLR 4 365 0 469 239 145 13 chr3 91915436 91915595 -135608983 + MIR SINE MIR 72 251 -11 245 393 51 54 chr3 91916813 91917185 -135607393 + L2 LINE L2 2902 3272 0 219 146 0 137 chr3 91918273 91918478 -135606100 + (GGGA)n Simple_repeat Simple_repeat 1 177 0 * 282 259 63 0 chr3 91918453 91918666 -135605912 + (AGGTG)n Simple_repeat Simple_repeat 1 226 0 2066 131 0 0 chr3 91918868 91919166 -135605412 + AluSx SINE Alu 1 298 -14 225 226 38 0 chr3 91919800 91919860 -135604718 + (CAGAGA)n Simple_repeat Simple_repeat 1 62 0 2805 151 17 15 chr3 91920780 91921305 -135603273 - L1MA4A LINE L1 -10 6293 5768 243 200 150 0 chr3 91921310 91921370 -135603208 + L2 LINE L2 3244 3312 -1 188 292 62 62 chr3 91921535 91921600 -135602978 - MIR SINE MIR -108 100 36 21 0 0 0 chr3 91923575 91923596 -135600982 + AT_rich Low_complexity Low_complexity 1 21 0 1667 225 82 31 chr3 91923663 91924139 -135600439 - MLT1D LTR MaLR -4 501 2 214 346 0 0 chr3 91924139 91924217 -135600361 - L2 LINE L2 -966 2348 2271 270 236 0 0 chr3 91924511 91924566 -135600012 - AluS SINE Alu -19 281 227 425 330 75 17 chr3 91924854 91925027 -135599551 - MER5A DNA MER1_type -6 183 1 22 0 0 0 chr3 91925509 91925531 -135599047 + AT_rich Low_complexity Low_complexity 1 22 0 2061 198 50 31 chr3 91925918 91926394 -135598184 + L1MB8 LINE L1 5694 6178 0 1387 118 10 5 chr3 91926406 91926609 -135597969 + AluSq SINE Alu 1 204 -109 1581 230 3 16 chr3 91928463 91928833 -135595745 - MLT1A1 LTR MaLR 0 365 1 2336 84 0 0 chr3 91928926 91929223 -135595355 - AluSx SINE Alu -15 297 1 681 186 21 14 chr3 91929325 91929470 -135595108 + AluJb SINE Alu 136 281 -31 2204 111 0 0 chr3 91931307 91931614 -135592964 - AluSg1 SINE Alu -2 307 1 2187 127 0 6 chr3 91936117 91936431 -135588147 - AluSx SINE Alu 0 312 1 225 338 14 65 chr3 91936927 91937066 -135587512 - L2 LINE L2 -189 3083 2952 1069 174 132 82 chr3 91937378 91937734 -135586844 + THE1C LTR MaLR 1 374 -1 2172 114 0 7 chr3 91938406 91938713 -135585865 + AluSc SINE Alu 2 306 -3 326 281 35 46 chr3 91939279 91939451 -135585127 + MLT1L LTR MaLR 110 343 -272 387 346 84 48 chr3 91939695 91940169 -135584409 + L2 LINE L2 2295 2785 -529 275 326 89 30 chr3 91940443 91940578 -135584000 + L2 LINE L2 2909 3051 -221 282 116 0 0 chr3 91941062 91941105 -135583473 + (TA)n Simple_repeat Simple_repeat 2 44 0 285 176 39 39 chr3 91941717 91941819 -135582759 + (CATATA)n Simple_repeat Simple_repeat 3 104 0 23 33 0 0 chr3 91942233 91942263 -135582315 + AT_rich Low_complexity Low_complexity 1 30 0 338 306 19 25 chr3 91943222 91943379 -135581199 + L2 LINE L2 1854 2009 -1305 646 236 136 10 chr3 91943663 91943862 -135580716 + MER58A DNA MER1_type 1 224 0 180 77 0 0 chr3 91943918 91943944 -135580634 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 3462 239 35 9 chr3 91944274 91944905 -135579673 + Tigger6a DNA MER2_type 201 861 -736 4108 76 7 0 chr3 91944905 91945458 -135579120 + L1PA7 LINE L1 5598 6154 0 3462 239 35 9 chr3 91945458 91945687 -135578891 + Tigger6a DNA MER2_type 861 1083 0 213 270 32 0 chr3 91946030 91946093 -135578485 + CT-rich Low_complexity Low_complexity 4 68 0 237 146 0 0 chr3 91946258 91946306 -135578272 + (TC)n Simple_repeat Simple_repeat 1 48 0 189 0 0 0 chr3 91946361 91946382 -135578196 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 562 236 110 37 chr3 91950260 91950451 -135574127 - MER63A DNA MER1_type -5 205 1 265 224 26 0 chr3 91951102 91951178 -135573400 - MER116 DNA Mariner -2 78 1 1717 174 7 13 chr3 91951217 91951516 -135573062 - AluJo SINE Alu -15 297 1 879 56 0 0 chr3 91952375 91952483 -135572095 + LTR17 LTR ERV1 217 324 -456 22 35 0 0 chr3 91952501 91952530 -135572048 + AT_rich Low_complexity Low_complexity 1 29 0 817 281 61 8 chr3 91953010 91953256 -135571322 + MIR SINE MIR 2 260 -2 1934 134 0 0 chr3 91953743 91954020 -135570558 - AluSx SINE Alu -1 311 35 2361 191 68 29 chr3 91954937 91955423 -135569155 + MLT2B3 LTR ERVL 1 505 -49 210 143 0 0 chr3 91955473 91955508 -135569070 + (TA)n Simple_repeat Simple_repeat 1 35 0 402 209 0 35 chr3 91955524 91955788 -135568790 + (TA)n Simple_repeat Simple_repeat 1 254 0 519 211 0 24 chr3 91955808 91956058 -135568520 + (TA)n Simple_repeat Simple_repeat 1 243 0 262 61 0 0 chr3 91956094 91956127 -135568451 + MLT2B3 LTR ERVL 488 520 0 310 340 89 21 chr3 91956862 91957144 -135567434 + L2 LINE L2 206 506 -2808 1299 174 128 143 chr3 91957571 91957888 -135566690 - MSTD LTR MaLR -28 388 88 670 205 8 8 chr3 91957888 91958015 -135566563 - FLAM_A SINE Alu -6 127 1 1299 174 128 143 chr3 91958015 91958084 -135566494 - MSTD LTR MaLR -328 88 19 283 326 75 20 chr3 91958161 91958308 -135566270 - L2 LINE L2 -2 3270 3116 1420 219 45 22 chr3 91958335 91958692 -135565886 - MLT1A1 LTR MaLR 0 365 1 570 125 10 0 chr3 91959407 91959511 -135565067 + L1MA4 LINE L1 6090 6194 -106 2327 84 0 3 chr3 92060393 92060701 -135463877 + AluY SINE Alu 5 311 0 198 0 0 0 chr3 92060872 92060894 -135463684 + (T)n Simple_repeat Simple_repeat 1 22 0 801 253 65 26 chr3 92061034 92061062 -135463516 + L1ME LINE L1 2142 2167 -3979 2284 115 0 0 chr3 92061062 92061366 -135463212 - AluSx SINE Alu -8 304 1 801 253 65 26 chr3 92061366 92061724 -135462854 + L1ME LINE L1 2167 2543 -3603 242 337 0 0 chr3 92061752 92061844 -135462734 - MER34 LTR ERV1 -446 96 5 761 250 30 43 chr3 92061848 92062152 -135462426 + L1ME LINE L1 4439 4738 -1408 1879 104 43 3 chr3 92062430 92062752 -135461826 + L1PA10 LINE L1 5833 6168 -6 279 374 48 0 chr3 92062755 92062921 -135461657 - MIR SINE MIR -83 179 6 323 297 94 12 chr3 92063025 92063281 -135461297 + L1ME LINE L1 5513 5789 -332 21 36 0 0 chr3 92063358 92063386 -135461192 + AT_rich Low_complexity Low_complexity 1 28 0 509 319 36 36 chr3 92063656 92063907 -135460671 - MIR SINE MIR -5 257 7 822 236 11 11 chr3 92065849 92066023 -135458555 + MER45 DNA AcHobo 6 179 -774 333 228 102 35 chr3 92066230 92066444 -135458134 + MER45C DNA AcHobo 701 953 0 22 56 0 0 chr3 92067415 92067451 -135457127 + AT_rich Low_complexity Low_complexity 1 36 0 21 82 0 0 chr3 92068062 92068111 -135456467 + AT_rich Low_complexity Low_complexity 1 49 0 1316 218 100 43 chr3 92068220 92068591 -135455987 - MER21B LTR ERV1 -11 852 461 3181 89 11 6 chr3 92068592 92069250 -135455328 + L1PA8A LINE L1 5023 5685 -446 * 3334 87 22 0 chr3 92069219 92069681 -135454897 + L1PA8A LINE L1 5544 6015 -116 24 0 0 0 chr3 92070803 92070827 -135453751 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 92071147 92071168 -135453410 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 92071876 92071897 -135452681 + AT_rich Low_complexity Low_complexity 1 21 0 241 314 137 10 chr3 92072124 92072226 -135452352 - L2 LINE L2 -1 3271 3157 1795 32 0 5 chr3 92073509 92073730 -135450848 - L1PA4 LINE L1 0 6155 5936 885 334 41 8 chr3 92075271 92075636 -135448942 + LTR57-int LTR ERVL 1852 2228 -3115 2051 132 32 51 chr3 92075663 92075960 -135448618 + THE1B LTR MaLR 1 291 -73 1988 149 3 28 chr3 92075960 92076281 -135448297 - AluSq SINE Alu 0 313 1 2051 132 32 51 chr3 92076281 92076354 -135448224 + THE1B LTR MaLR 291 364 0 11155 108 8 1 chr3 92076356 92077923 -135446655 + THE1B-int LTR MaLR 3 1580 0 1920 158 35 41 chr3 92077923 92078289 -135446289 + THE1B LTR MaLR 1 364 0 306 219 123 14 chr3 92078439 92078512 -135446066 + MLT2B1 LTR ERVL 409 535 -19 267 229 0 20 chr3 92078575 92078728 -135445850 + (TA)n Simple_repeat Simple_repeat 1 150 0 31 0 0 0 chr3 92079497 92079528 -135445050 + AT_rich Low_complexity Low_complexity 1 31 0 233 156 0 0 chr3 92079582 92079646 -135444932 + Tigger3(Golem) DNA MER2_type 2497 2560 -469 182 125 31 31 chr3 92080028 92080092 -135444486 + (TA)n Simple_repeat Simple_repeat 2 65 0 5703 156 95 4 chr3 92080139 92081267 -135443311 + Tigger3b DNA MER2_type 2 1231 0 1169 245 64 22 chr3 92081267 92081571 -135443007 - LTR57-int LTR ERVL -1360 4404 4085 1392 233 67 20 chr3 92081694 92082098 -135442480 - MER21B LTR ERV1 -398 465 43 249 233 0 50 chr3 92082096 92082122 -135442456 - MER21B LTR ERV1 -769 94 68 * 1700 199 42 6 chr3 92082122 92082458 -135442120 + MER7A DNA MER2_type 1 346 0 249 233 0 50 chr3 92082458 92082491 -135442087 - MER21B LTR ERV1 -795 68 38 248 208 0 97 chr3 92082550 92082622 -135441956 - MER21B LTR ERV1 -798 65 1 192 300 43 0 chr3 92083076 92083146 -135441432 + MIR SINE MIR 164 236 -26 317 318 62 8 chr3 92083233 92083362 -135441216 - LTR16A1 LTR ERVL -14 443 308 214 117 67 33 chr3 92083400 92083460 -135441118 + T-rich Low_complexity Low_complexity 6 67 0 33 25 0 0 chr3 92083476 92083516 -135441062 + AT_rich Low_complexity Low_complexity 1 40 0 223 184 23 0 chr3 92083530 92083617 -135440961 + (TA)n Simple_repeat Simple_repeat 2 90 0 26 50 0 0 chr3 92084293 92084333 -135440245 + AT_rich Low_complexity Low_complexity 1 40 0 1797 149 62 0 chr3 92084446 92084735 -135439843 - AluSx SINE Alu -5 307 1 416 211 19 39 chr3 92085144 92085248 -135439330 + MER103 DNA DNA 18 119 -47 74 57 0 0 chr3 92087744 92087867 -135436711 + AT_rich Low_complexity Low_complexity 1 123 0 342 343 105 60 chr3 92091602 92092144 -135432434 + L2 LINE L2 2631 3184 -129 453 294 12 31 chr3 92092170 92092333 -135432245 + L2 LINE L2 3146 3305 -8 276 110 27 55 chr3 92092395 92092468 -135432110 + (CATATA)n Simple_repeat Simple_repeat 4 74 0 2264 145 41 23 chr3 92093519 92093961 -135430617 + LTR7 LTR ERV1 1 450 0 266 355 26 26 chr3 92094120 92094272 -135430306 - LTR57-int LTR ERVL -5149 194 43 1265 281 60 14 chr3 92094322 92094742 -135429836 - LTR47B LTR ERVL -4 439 1 2155 71 0 0 chr3 92094769 92095035 -135429543 + AluY SINE Alu 1 266 -45 434 302 67 53 chr3 92095216 92095501 -135429077 - LTR34 LTR ERV1 -177 522 234 206 378 84 21 chr3 92095959 92096102 -135428476 - L2 LINE L2 -935 2379 2228 1754 165 40 0 chr3 92096486 92096783 -135427795 - AluJb SINE Alu -1 311 3 6513 141 3 4 chr3 92098557 92099642 -135424936 + L1P LINE L1 3031 4114 -2032 4872 35 1 1 chr3 92099744 92100595 -135423983 - L1PA4 LINE L1 -317 5838 4988 * 9741 49 7 7 chr3 92100591 92100947 -135423631 + L1P LINE L1 3758 4112 -2034 7871 93 3 1 chr3 92100947 92102016 -135422562 + MER11C LTR ERVK 1 1071 0 9741 49 7 7 chr3 92102016 92102899 -135421679 + L1P LINE L1 4112 4998 -1148 2124 201 36 0 chr3 92102899 92103312 -135421266 - LTR57-int LTR ERVL -1711 4053 3626 9418 204 30 4 chr3 92103416 92105203 -135419375 - LTR57-int LTR ERVL -2119 3645 1813 728 291 31 5 chr3 92105234 92105457 -135419121 + MLT1D LTR MaLR 277 505 0 382 283 0 0 chr3 92105457 92105563 -135419015 + L1ME1 LINE L1 6014 6119 -47 218 343 15 0 chr3 92105968 92106035 -135418543 - L2 LINE L2 -1 3271 3204 274 164 0 33 chr3 92107168 92107229 -135417349 - L1ME2 LINE L1 -2 6162 6104 1682 200 3 0 chr3 92107276 92107576 -135417002 - AluJb SINE Alu -11 301 1 1621 254 45 51 chr3 92107753 92108265 -135416313 + L1M4 LINE L1 16 524 -6018 383 174 0 29 chr3 92108268 92108337 -135416241 + L1M4 LINE L1 771 837 -5705 189 0 0 0 chr3 92108438 92108459 -135416119 + (CA)n Simple_repeat Simple_repeat 2 22 0 201 94 0 0 chr3 92108539 92108571 -135416007 + (TC)n Simple_repeat Simple_repeat 1 32 0 2322 135 20 0 chr3 92109324 92109679 -135414899 + THE1B LTR MaLR 1 362 -2 1851 230 45 38 chr3 92109928 92109956 -135414622 - MLT2B1 LTR ERVL -11 509 483 183 42 0 0 chr3 92109956 92109980 -135414598 + (GA)n Simple_repeat Simple_repeat 1 24 0 1851 230 45 38 chr3 92109980 92110456 -135414122 - MLT2B1 LTR ERVL -37 483 1 186 368 152 8 chr3 92110610 92110735 -135413843 + L2 LINE L2 3126 3268 -4 23 54 0 0 chr3 92110759 92110796 -135413782 + AT_rich Low_complexity Low_complexity 1 37 0 2371 186 70 6 chr3 92110849 92111365 -135413213 + LTR49 LTR ERV1 3 551 -44 491 352 25 25 chr3 92111610 92111809 -135412769 - MIR SINE MIR -59 203 5 331 262 116 30 chr3 92111780 92111944 -135412634 - MIR SINE MIR -38 224 47 * 1062 233 157 16 chr3 92112400 92112777 -135411801 - LTR47B LTR ERVL -1 442 13 284 175 0 48 chr3 92112799 92112862 -135411716 - PABL_B-int LTR ERV1 -4089 4031 3972 462 320 0 26 chr3 92113164 92113317 -135411261 - PABL_B-int LTR ERV1 -1341 5781 5633 25 0 0 0 chr3 92113802 92113827 -135410751 + AT_rich Low_complexity Low_complexity 1 25 0 1194 206 53 29 chr3 92113828 92114109 -135410469 - AluJo SINE Alu -14 288 1 207 254 34 34 chr3 92114469 92114528 -135410050 - MIR SINE MIR -133 75 17 181 358 90 0 chr3 92114589 92114656 -135409922 + MIR SINE MIR 40 112 -150 23 33 0 0 chr3 92115094 92115124 -135409454 + AT_rich Low_complexity Low_complexity 1 30 0 1990 113 0 3 chr3 92115454 92115765 -135408813 + AluSx SINE Alu 1 310 0 1006 159 25 0 chr3 92115766 92115923 -135408655 + AluSg/x SINE Alu 135 295 -17 25 0 0 0 chr3 92115923 92115948 -135408630 + AT_rich Low_complexity Low_complexity 1 25 0 1780 117 89 7 chr3 92117153 92117461 -135407117 + AluSp SINE Alu 1 313 0 983 231 34 63 chr3 92118687 92119068 -135405510 - L1MA9 LINE L1 -32 6280 5911 499 212 0 0 chr3 92119070 92119174 -135405404 + L1MA9 LINE L1 5777 5880 -283 2103 119 0 30 chr3 92119511 92119814 -135404764 + AluSx SINE Alu 1 294 -18 8977 32 4 0 chr3 92119818 92120915 -135403663 - L1P1 LINE L1 -2002 4144 3044 * 10642 28 0 0 chr3 92120907 92122508 -135402070 + L1P1 LINE L1 4128 5729 -426 282 378 6 18 chr3 92123925 92124089 -135400489 - MIR3 SINE MIR -31 177 16 938 210 0 0 chr3 92125817 92125984 -135398594 + FAM SINE Alu 1 41 -8 231 36 0 0 chr3 92127620 92127648 -135396930 + (TAGA)n Simple_repeat Simple_repeat 1 28 0 25 0 0 0 chr3 92129709 92129734 -135394844 + AT_rich Low_complexity Low_complexity 1 25 0 230 49 0 49 chr3 92129741 92129782 -135394796 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 192 340 0 0 chr3 92133034 92133084 -135391494 - L2 LINE L2 -9 3263 3214 5243 148 6 1 chr3 92133472 92134309 -135390269 - L1PA15 LINE L1 0 6165 5325 181 281 202 0 chr3 92135418 92135507 -135389071 - MIR SINE MIR -109 153 47 * 183 301 43 104 chr3 92135484 92135647 -135388931 + MIR3 SINE MIR 20 172 -36 380 55 18 0 chr3 92135900 92135955 -135388623 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 215 119 51 17 chr3 92136108 92136167 -135388411 + (TA)n Simple_repeat Simple_repeat 2 62 0 209 195 39 13 chr3 92136261 92136338 -135388240 + (TA)n Simple_repeat Simple_repeat 1 79 0 21 57 0 0 chr3 92136621 92136656 -135387922 + AT_rich Low_complexity Low_complexity 1 35 0 1444 205 35 38 chr3 92137202 92137548 -135387030 - MLT1A1 LTR MaLR 0 365 21 28 61 0 0 chr3 92139672 92139721 -135384857 + AT_rich Low_complexity Low_complexity 1 49 0 185 122 36 58 chr3 92139723 92139862 -135384716 + (TATAA)n Simple_repeat Simple_repeat 1 136 0 21 0 0 0 chr3 92141206 92141227 -135383351 + AT_rich Low_complexity Low_complexity 1 21 0 330 349 51 43 chr3 92141250 92141602 -135382976 - LTR33 LTR ERVL -8 513 159 2313 73 6 10 chr3 92141856 92142170 -135382408 + AluSq SINE Alu 1 313 0 2186 141 17 3 chr3 92142242 92142603 -135381975 + MER47A DNA MER2_type 1 366 0 220 317 87 10 chr3 92142692 92142796 -135381782 + MIR SINE MIR 150 261 -1 1184 245 105 65 chr3 92143019 92143525 -135381053 + MER34 LTR ERV1 17 542 0 27 62 0 0 chr3 92144514 92144562 -135380016 + AT_rich Low_complexity Low_complexity 1 48 0 3060 161 31 7 chr3 92144642 92145182 -135379396 - Tigger1 DNA MER2_type 0 2418 1866 751 197 0 0 chr3 92145182 92145314 -135379264 + FLAM_C SINE Alu 1 132 -11 10153 152 21 10 chr3 92145340 92147033 -135377545 - Tigger1 DNA MER2_type -539 1879 169 300 374 65 43 chr3 92149238 92149655 -135374923 - L2 LINE L2 -627 2687 2262 1817 142 13 26 chr3 92149741 92150052 -135374526 + AluSx SINE Alu 2 308 -4 647 190 35 0 chr3 92150052 92150226 -135374352 + GA-rich Low_complexity Low_complexity 1 180 0 241 373 49 0 chr3 92150893 92150995 -135373583 - L2 LINE L2 -2 3311 3205 219 272 20 88 chr3 92151049 92151196 -135373382 - L2 LINE L2 -250 3063 2927 2604 7 0 3 chr3 92151570 92151868 -135372710 + L1PA2 LINE L1 5853 6149 -6 33 66 0 0 chr3 92151868 92151929 -135372649 + AT_rich Low_complexity Low_complexity 1 61 0 1442 211 13 0 chr3 92151993 92152301 -135372277 - AluJb SINE Alu 0 312 1 21 0 0 0 chr3 92152352 92152373 -135372205 + AT_rich Low_complexity Low_complexity 1 21 0 282 160 0 0 chr3 92152556 92152606 -135371972 + (TA)n Simple_repeat Simple_repeat 1 50 0 2243 32 57 0 chr3 92156762 92157044 -135367534 - AluY SINE Alu -13 298 1 25 31 0 0 chr3 92157296 92157328 -135367250 + GC_rich Low_complexity Low_complexity 1 32 0 23 68 0 0 chr3 92157701 92157745 -135366833 + AT_rich Low_complexity Low_complexity 1 44 0 261 254 0 15 chr3 92158136 92158203 -135366375 + CT-rich Low_complexity Low_complexity 2 67 0 369 268 98 68 chr3 92158300 92158889 -135365689 - L1M4 LINE L1 -2190 3956 3325 257 211 11 42 chr3 92159026 92159121 -135365457 + T-rich Low_complexity Low_complexity 4 95 0 408 141 7 89 chr3 92159844 92159979 -135364599 + L1MA8 LINE L1 6164 6287 -4 22 0 0 0 chr3 92160050 92160072 -135364506 + AT_rich Low_complexity Low_complexity 1 22 0 254 253 0 0 chr3 92160508 92160599 -135363979 - L1MC4 LINE L1 -1338 6704 6614 264 111 0 0 chr3 92160599 92160644 -135363934 + (TA)n Simple_repeat Simple_repeat 1 45 0 2251 107 3 0 chr3 92162693 92162993 -135361585 - AluSx SINE Alu -11 301 1 3980 79 19 40 chr3 92163569 92164181 -135360397 + L1MA1 LINE L1 5691 6291 -11 2021 139 3 0 chr3 92164181 92164482 -135360096 - AluSq SINE Alu -11 302 1 21 36 0 0 chr3 92164491 92164519 -135360059 + AT_rich Low_complexity Low_complexity 1 28 0 706 324 70 0 chr3 92165273 92165514 -135359064 + MER119 DNA MER1_type 9 266 -317 407 280 143 24 chr3 92165824 92165992 -135358586 + MER102b DNA MER1_type 146 333 -8 276 219 26 123 chr3 92166169 92166283 -135358295 - MIR SINE MIR -30 232 130 1423 268 38 33 chr3 92166283 92166709 -135357869 - LTR40a LTR ERVL 0 519 92 220 242 30 133 chr3 92167069 92167181 -135357397 + MER5B DNA MER1_type 69 159 -19 349 378 0 7 chr3 92168493 92168641 -135355937 + L2 LINE L2 2553 2699 -615 205 340 80 53 chr3 92168778 92168966 -135355612 + L2 LINE L2 2882 3074 -198 1461 255 28 22 chr3 92169376 92169737 -135354841 - MLT1A2 LTR MaLR -11 363 1 523 250 15 8 chr3 92170244 92170376 -135354202 + MIR SINE MIR 73 205 -57 21 36 0 0 chr3 92170742 92170770 -135353808 + AT_rich Low_complexity Low_complexity 1 28 0 2047 113 33 0 chr3 92171426 92171727 -135352851 - L1PA8 LINE L1 -8 6164 5854 257 402 33 0 chr3 92172349 92172471 -135352107 - MIR SINE MIR -88 174 49 42197 51 5 3 chr3 92172673 92178813 -135345765 + L1PA4 LINE L1 1 6155 0 322 329 30 30 chr3 92178877 92179041 -135345537 - L3 LINE CR1 -1267 310 147 494 319 51 28 chr3 92179330 92179584 -135344994 - MIR SINE MIR 0 262 3 902 218 21 10 chr3 92180056 92180249 -135344329 + MER20 DNA MER1_type 25 219 0 198 220 0 0 chr3 92181808 92181867 -135342711 + (TATATG)n Simple_repeat Simple_repeat 5 63 0 206 198 47 35 chr3 92182094 92182180 -135342398 + (TTAAA)n Simple_repeat Simple_repeat 4 90 0 2116 137 79 53 chr3 92182791 92182842 -135341736 - MSTA LTR MaLR 0 428 380 2181 59 48 0 chr3 92182842 92183153 -135341425 - AluY SINE Alu 0 324 1 2116 137 79 53 chr3 92183153 92183517 -135341061 - MSTA LTR MaLR -48 380 1 8307 183 30 7 chr3 92183517 92185131 -135339447 - MSTA-int LTR MaLR 0 1651 1 2400 133 40 21 chr3 92185131 92185551 -135339027 - MSTA LTR MaLR 0 428 1 21 36 0 0 chr3 92185931 92185959 -135338619 + AT_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr3 92187439 92187489 -135337089 + AT_rich Low_complexity Low_complexity 1 50 0 491 307 26 0 chr3 92187503 92187656 -135336922 - MIR SINE MIR -30 232 76 25 0 0 0 chr3 92187757 92187782 -135336796 + AT_rich Low_complexity Low_complexity 1 25 0 1145 191 0 15 chr3 92188845 92189049 -135335529 - MLT1A1 LTR MaLR 0 365 165 1223 132 5 0 chr3 92189076 92189266 -135335312 - AluSg/x SINE Alu 0 312 122 915 142 0 7 chr3 92189266 92189407 -135335171 - MLT1A1 LTR MaLR -225 140 1 367 284 178 43 chr3 92191969 92192177 -135332401 - MIR SINE MIR -1 261 26 24 53 0 0 chr3 92192244 92192282 -135332296 + AT_rich Low_complexity Low_complexity 1 38 0 41 93 0 0 chr3 92192313 92192431 -135332147 + AT_rich Low_complexity Low_complexity 1 118 0 2136 133 0 0 chr3 92192434 92192736 -135331842 + AluSx SINE Alu 1 302 -10 21 0 0 0 chr3 92194174 92194195 -135330383 + AT_rich Low_complexity Low_complexity 1 21 0 538 121 0 22 chr3 92194201 92194292 -135330286 + THE1B LTR MaLR 276 364 0 22 0 0 0 chr3 92194302 92194324 -135330254 + AT_rich Low_complexity Low_complexity 1 22 0 2044 121 0 0 chr3 92194324 92194633 -135329945 + AluSg SINE Alu 1 309 0 22 80 0 0 chr3 92194641 92194691 -135329887 + AT_rich Low_complexity Low_complexity 1 50 0 439 292 55 47 chr3 92195375 92195764 -135328814 + L1ME LINE L1 5299 5697 -424 1761 102 0 68 chr3 92196118 92196413 -135328165 + AluSq SINE Alu 1 275 -38 226 281 78 23 chr3 92196559 92196687 -135327891 - MLT1J1 LTR MaLR -311 135 1 546 332 25 0 chr3 92197647 92197846 -135326732 + L2 LINE L2 2066 2269 -1045 214 296 92 20 chr3 92197958 92198056 -135326522 + L2 LINE L2 3148 3252 -61 1253 40 0 0 chr3 92198826 92198975 -135325603 + AluY SINE Alu 158 306 -5 210 118 0 0 chr3 92202572 92202606 -135321972 + (TG)n Simple_repeat Simple_repeat 2 35 0 189 132 0 0 chr3 92204696 92204734 -135319844 + (A)n Simple_repeat Simple_repeat 1 38 0 24 53 0 0 chr3 92206751 92206789 -135317789 + AT_rich Low_complexity Low_complexity 1 38 0 1380 139 170 4 chr3 92207859 92208118 -135316460 - AluSx SINE Alu -10 302 1 192 152 0 0 chr3 92208728 92208761 -135315817 + (TG)n Simple_repeat Simple_repeat 2 34 0 279 159 29 14 chr3 92208764 92208833 -135315745 - LTR57-int LTR ERVL -4398 945 876 512 240 6 0 chr3 92208834 92209013 -135315565 + (TA)n Simple_repeat Simple_repeat 1 180 0 300 342 120 70 chr3 92209059 92209578 -135315000 - L2 LINE L2 0 3272 2733 193 158 0 0 chr3 92210077 92210115 -135314463 + L2 LINE L2 3276 3313 0 818 350 83 19 chr3 92210160 92210878 -135313700 - L2 LINE L2 0 3313 2560 651 188 24 88 chr3 92210878 92211048 -135313530 - MSTB1 LTR MaLR 0 432 274 * 1171 73 7 0 chr3 92211043 92211194 -135313384 - THE1A LTR MaLR -201 154 3 10607 124 11 4 chr3 92211196 92212765 -135311813 - THE1A-int LTR MaLR 0 1580 1 2493 110 3 0 chr3 92212765 92213119 -135311459 - THE1A LTR MaLR 0 355 1 262 233 41 0 chr3 92213126 92213199 -135311379 + L1ME1 LINE L1 5698 5773 -393 22 94 0 0 chr3 92213208 92213272 -135311306 + AT_rich Low_complexity Low_complexity 1 64 0 824 278 23 46 chr3 92213272 92213664 -135310914 + L1ME1 LINE L1 5779 6161 -5 888 293 150 30 chr3 92214138 92214688 -135309890 + MLT1G LTR MaLR 1 590 0 461 104 13 0 chr3 92216342 92216419 -135308159 + (CA)n Simple_repeat Simple_repeat 1 78 0 2287 160 6 3 chr3 92217005 92217368 -135307210 - THE1B LTR MaLR 0 364 1 10648 120 5 27 chr3 92217368 92218984 -135305594 - THE1B-int LTR MaLR 0 1580 1 2502 112 14 8 chr3 92218988 92219345 -135305233 - THE1B LTR MaLR -5 359 1 283 242 101 50 chr3 92219419 92219518 -135305060 - MLT1L LTR MaLR -509 106 3 321 26 0 0 chr3 92219721 92219759 -135304819 + (TG)n Simple_repeat Simple_repeat 1 38 0 1729 183 30 30 chr3 92219760 92219975 -135304603 + THE1C LTR MaLR 15 232 -143 2184 119 3 0 chr3 92219975 92220277 -135304301 + AluY SINE Alu 1 303 -8 1729 183 30 30 chr3 92220277 92220422 -135304156 + THE1C LTR MaLR 231 375 0 3850 70 2 2 chr3 92221006 92221491 -135303087 - LTR2B LTR ERV1 -5 485 1 40978 67 4 1 chr3 92221756 92227885 -135296693 + L1PA5 LINE L1 3 6148 -6 239 310 38 33 chr3 92228092 92228276 -135296302 + HAL1b LINE L1 343 527 -821 270 273 14 0 chr3 92328652 92328727 -135195851 + MLT1G1 LTR MaLR 476 595 0 277 375 37 28 chr3 92329414 92329630 -135194948 - L2 LINE L2 -448 2866 2649 267 190 0 0 chr3 92329723 92329781 -135194797 + (CAT)n Simple_repeat Simple_repeat 2 59 0 542 307 29 37 chr3 92330689 92330930 -135193648 + MIR SINE MIR 3 241 -21 22 0 0 0 chr3 92331030 92331052 -135193526 + AT_rich Low_complexity Low_complexity 1 22 0 312 266 82 39 chr3 92331355 92331501 -135193077 - MLT1I LTR MaLR -189 220 67 303 28 0 0 chr3 92332945 92332981 -135191597 + (CA)n Simple_repeat Simple_repeat 2 37 0 376 337 76 40 chr3 92333862 92334165 -135190413 - L2 LINE L2 -4 3309 2996 471 0 32 0 chr3 92336360 92336422 -135188156 - L1PA2 LINE L1 0 6155 6092 22 35 0 0 chr3 92337202 92337231 -135187347 + AT_rich Low_complexity Low_complexity 1 29 0 263 260 31 0 chr3 92337379 92337475 -135187103 - L1M4 LINE L1 -1052 5094 4996 2363 128 72 15 chr3 92337573 92337978 -135186600 + MSTA LTR MaLR 1 428 0 1563 250 64 34 chr3 92338122 92338594 -135185984 - MLT1F1 LTR MaLR -4 563 78 2597 85 8 3 chr3 92340008 92340360 -135184218 + THE1A LTR MaLR 1 354 -1 11067 97 15 3 chr3 92340361 92341923 -135182655 + THE1A-int LTR MaLR 1 1580 0 2610 96 6 0 chr3 92341923 92342276 -135182302 + THE1A LTR MaLR 1 355 0 259 98 0 0 chr3 92343853 92343894 -135180684 - MER103 DNA DNA -2 164 124 457 311 114 26 chr3 92344258 92344486 -135180092 - MIR SINE MIR -13 249 2 7456 35 3 0 chr3 92345339 92346800 -135177778 + L1PA3 LINE L1 4690 6152 -3 317 270 31 74 chr3 92347920 92348083 -135176495 + MLT1I LTR MaLR 252 407 -2 610 200 0 0 chr3 92348365 92348475 -135176103 + FLAM_A SINE Alu 1 110 -32 21 36 0 0 chr3 92348529 92348557 -135176021 + AT_rich Low_complexity Low_complexity 1 28 0 416 262 171 6 chr3 92350114 92350278 -135174300 + MIR SINE MIR 67 257 -5 22 0 0 0 chr3 92350833 92350855 -135173723 + AT_rich Low_complexity Low_complexity 1 22 0 226 176 0 20 chr3 92350865 92350916 -135173662 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 14304 39 0 0 chr3 92350925 92353514 -135171064 - L1PA4 LINE L1 0 6155 3567 1886 146 48 38 chr3 92354217 92354588 -135169990 + THE1C LTR MaLR 1 375 0 2073 90 0 48 chr3 92354706 92354995 -135169583 + AluSg SINE Alu 4 278 -32 26 30 0 0 chr3 92354995 92355028 -135169550 + AT_rich Low_complexity Low_complexity 1 33 0 387 335 25 12 chr3 92355138 92355299 -135169279 - MER5A DNA MER1_type 0 189 27 247 266 0 0 chr3 92355471 92355535 -135169043 + (TAG)n Simple_repeat Simple_repeat 2 65 0 870 180 23 12 chr3 92355536 92355644 -135168934 - Tigger7 DNA MER2_type -1 2586 2474 2330 171 39 0 chr3 92355644 92356060 -135168518 + MSTB1 LTR MaLR 1 432 0 870 180 23 12 chr3 92356060 92356123 -135168455 - Tigger7 DNA MER2_type -113 2474 2413 1470 215 63 0 chr3 92356143 92356445 -135168133 - Tigger7 DNA MER2_type -2166 321 1 727 332 38 6 chr3 92358217 92358530 -135166048 + LTR16C LTR ERVL 116 438 -53 1644 40 0 0 chr3 92358532 92358730 -135165848 + L1PA5 LINE L1 5957 6154 0 436 324 29 8 chr3 92358860 92359094 -135165484 - MLT1E LTR MaLR -249 300 20 189 280 102 25 chr3 92359414 92359532 -135165046 + L2 LINE L2 2933 3059 -213 399 283 51 14 chr3 92359707 92359845 -135164733 + L2 LINE L2 3171 3313 0 288 0 0 0 chr3 92360538 92360570 -135164008 + (TG)n Simple_repeat Simple_repeat 1 32 0 815 11 0 0 chr3 92362682 92362777 -135161801 + L1PA2 LINE L1 6058 6152 -3 198 0 0 0 chr3 92362799 92362821 -135161757 + (TG)n Simple_repeat Simple_repeat 2 23 0 611 194 82 6 chr3 92365531 92365701 -135158877 - MER53 DNA DNA -1 188 6 316 206 10 21 chr3 92366038 92366135 -135158443 + CT-rich Low_complexity Low_complexity 4 99 0 1668 260 88 30 chr3 92366155 92366658 -135157920 + MLT1F LTR MaLR 11 542 0 30 59 0 0 chr3 92368050 92368101 -135156477 + AT_rich Low_complexity Low_complexity 1 51 0 194 324 0 56 chr3 92368172 92368243 -135156335 - L2 LINE L2 0 3272 3206 197 65 32 0 chr3 92369015 92369046 -135155532 + (TCCC)n Simple_repeat Simple_repeat 1 32 0 480 239 64 9 chr3 92369047 92369156 -135155422 - L2 LINE L2 -6 3307 3193 1212 201 80 43 chr3 92369627 92369976 -135154602 - MLT1A1 LTR MaLR -3 362 1 28 48 0 0 chr3 92370057 92370099 -135154479 + AT_rich Low_complexity Low_complexity 1 42 0 375 308 62 0 chr3 92370107 92370237 -135154341 + L2 LINE L2 3173 3310 -3 * 512 317 62 26 chr3 92370213 92370440 -135154138 - MIR SINE MIR -5 257 23 202 404 35 23 chr3 92370552 92370723 -135153855 - L2 LINE L2 -530 2784 2612 2403 60 0 0 chr3 92370943 92371228 -135153350 - AluY SINE Alu -10 301 17 304 247 26 0 chr3 92373707 92373784 -135150794 + MIR SINE MIR 183 261 -1 21 36 0 0 chr3 92373784 92373812 -135150766 + AT_rich Low_complexity Low_complexity 1 28 0 1869 122 38 21 chr3 92374212 92374499 -135150079 - AluSg SINE Alu -18 292 1 475 248 66 8 chr3 92375821 92375942 -135148636 + MER5B DNA MER1_type 21 148 -30 5624 44 8 0 chr3 92376650 92377353 -135147225 - L1PA3 LINE L1 -3829 2317 1609 24942 36 0 0 chr3 92377353 92381179 -135143399 + L1PA3 LINE L1 2322 6155 0 21 71 0 0 chr3 92381317 92381359 -135143219 + AT_rich Low_complexity Low_complexity 1 42 0 254 221 98 0 chr3 92381421 92381543 -135143035 + (TTTAG)n Simple_repeat Simple_repeat 2 135 0 31 44 0 0 chr3 92383361 92383406 -135141172 + AT_rich Low_complexity Low_complexity 1 45 0 196 244 61 49 chr3 92384961 92385043 -135139535 - MIR SINE MIR -13 249 167 270 73 0 0 chr3 92385199 92385240 -135139338 + (TG)n Simple_repeat Simple_repeat 1 41 0 251 339 36 36 chr3 92385242 92385354 -135139224 + L2 LINE L2 3146 3257 -15 22 35 0 0 chr3 92386372 92386401 -135138177 + AT_rich Low_complexity Low_complexity 1 29 0 228 273 15 45 chr3 92388789 92388855 -135135723 - L2 LINE L2 -16 3256 3193 492 32 0 0 chr3 92388857 92388919 -135135659 + (CA)n Simple_repeat Simple_repeat 2 63 0 357 143 20 112 chr3 92389020 92389118 -135135460 - MER53 DNA DNA 0 189 101 297 345 149 12 chr3 92389131 92389384 -135135194 - L2 LINE L2 -191 3081 2793 1675 203 29 46 chr3 92389565 92390019 -135134559 - L1MA10 LINE L1 -13 6321 5876 680 224 112 5 chr3 92390175 92390398 -135134180 - Charlie4 DNA MER1_type -1695 266 20 2099 125 3 0 chr3 92392667 92392962 -135131616 - AluSp SINE Alu -17 296 1 24 0 0 0 chr3 92393265 92393289 -135131289 + AT_rich Low_complexity Low_complexity 1 24 0 762 183 8 0 chr3 92394092 92394223 -135130355 + FLAM_C SINE Alu 1 132 -11 639 274 92 53 chr3 92395738 92395869 -135128709 - MER93a LTR ERV1 -25 377 253 2009 107 15 0 chr3 92395869 92396139 -135128439 + AluSc SINE Alu 1 274 -35 294 29 0 0 chr3 92396140 92396175 -135128403 + (TC)n Simple_repeat Simple_repeat 2 36 0 639 274 92 53 chr3 92396175 92396344 -135128234 - MER93a LTR ERV1 -148 254 63 584 77 0 0 chr3 92396431 92396509 -135128069 - MADE1 DNA Mariner -2 78 1 245 371 35 9 chr3 92397090 92397206 -135127372 + MIR3 SINE MIR 53 171 -37 221 0 0 33 chr3 92398214 92398244 -135126334 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 3080 11 0 6 chr3 92399627 92399984 -135124594 - L1PA2 LINE L1 -2 6153 5799 2603 88 8 3 chr3 92400171 92400524 -135124054 + THE1A LTR MaLR 1 355 0 10811 92 30 15 chr3 92400524 92402080 -135122498 + THE1A-int LTR MaLR 1 1580 0 2500 90 5 38 chr3 92402080 92402447 -135122131 + THE1A LTR MaLR 1 355 0 272 304 183 26 chr3 92403073 92403188 -135121390 + L2 LINE L2 3139 3271 -1 344 340 35 0 chr3 92404650 92404791 -135119787 - MIR SINE MIR -104 158 13 35 54 0 0 chr3 92405951 92406007 -135118571 + AT_rich Low_complexity Low_complexity 1 56 0 28 0 0 0 chr3 92406164 92406192 -135118386 + AT_rich Low_complexity Low_complexity 1 28 0 333 352 71 31 chr3 92406258 92406454 -135118124 - MIR3 SINE MIR 0 208 5 1037 80 0 7 chr3 92406670 92406808 -135117770 - AluSg/x SINE Alu 0 310 174 686 216 211 103 chr3 92407055 92407345 -135117233 + MLT1E1 LTR MaLR 13 400 -254 * 1003 239 65 28 chr3 92407342 92407664 -135116914 + MLT1E3 LTR MaLR 291 624 0 1454 270 58 40 chr3 92407677 92408174 -135116404 + MLT1E LTR MaLR 1 506 -87 1468 184 10 35 chr3 92408506 92408816 -135115762 + AluJo SINE Alu 2 303 -9 3413 145 17 0 chr3 92410244 92410762 -135113816 + MER1A DNA MER1_type 1 527 -2 184 307 202 9 chr3 92411288 92411402 -135113176 + L2 LINE L2 3125 3260 -12 312 151 0 0 chr3 92411583 92411636 -135112942 - L1PA13 LINE L1 -11 6152 6100 3683 106 4 0 chr3 92411640 92412158 -135112420 + L1PA13 LINE L1 5581 6100 -63 800 97 8 22 chr3 92412334 92412468 -135112110 + L1PA16 LINE L1 6035 6166 0 464 283 110 17 chr3 92414018 92414191 -135110387 + MER5A DNA MER1_type 1 189 0 1380 236 83 6 chr3 92414971 92415310 -135109268 + MLT1A1 LTR MaLR 1 365 0 263 211 14 42 chr3 92415681 92415752 -135108826 + CT-rich Low_complexity Low_complexity 3 71 0 264 235 86 25 chr3 92415979 92416060 -135108518 + MIR3 SINE MIR 84 169 -39 1409 184 72 7 chr3 92416816 92417109 -135107469 + AluJo SINE Alu 1 312 0 637 39 0 0 chr3 92417242 92417319 -135107259 - L1P LINE L1 -1152 4994 4918 3599 19 0 2 chr3 92417319 92417759 -135106819 + L1PA3 LINE L1 5724 6162 0 21 0 0 0 chr3 92418148 92418169 -135106409 + AT_rich Low_complexity Low_complexity 1 21 0 223 347 157 14 chr3 92418669 92418816 -135105762 - MIR SINE MIR -75 187 20 2103 131 0 10 chr3 92419596 92419908 -135104670 - AluSx SINE Alu -3 309 1 643 264 107 41 chr3 92420271 92420678 -135103900 + L2 LINE L2 2687 3120 -193 659 258 32 26 chr3 92421149 92421339 -135103239 + L2 LINE L2 3121 3311 -2 247 204 0 37 chr3 92421387 92421441 -135103137 - L2 LINE L2 -70 3243 3192 360 0 0 0 chr3 92422898 92422938 -135101640 + (T)n Simple_repeat Simple_repeat 1 40 0 321 26 0 0 chr3 92423756 92423794 -135100784 + (CA)n Simple_repeat Simple_repeat 1 38 0 246 267 147 0 chr3 92424251 92424326 -135100252 + MIR SINE MIR 68 153 -55 218 108 62 0 chr3 92424714 92424779 -135099799 + (TA)n Simple_repeat Simple_repeat 2 70 0 29 47 0 0 chr3 92424783 92424826 -135099752 + AT_rich Low_complexity Low_complexity 1 43 0 2065 134 10 3 chr3 92426414 92426720 -135097858 + AluSx SINE Alu 1 308 -4 225 0 0 0 chr3 92426964 92426989 -135097589 + (TTTTG)n Simple_repeat Simple_repeat 5 29 0 316 282 39 10 chr3 92427134 92427237 -135097341 + MIR3 SINE MIR 100 205 -3 2330 83 0 0 chr3 92427304 92427594 -135096984 - AluSx SINE Alu -22 290 1 547 203 122 0 chr3 92428403 92428526 -135096052 - MER58B DNA MER1_type -37 304 167 260 327 75 19 chr3 92428616 92428723 -135095855 + L2 LINE L2 2945 3057 -215 439 258 32 105 chr3 92429165 92429355 -135095223 + MLT1J LTR MaLR 92 267 -244 549 118 11 0 chr3 92429359 92429452 -135095126 + L1MA1 LINE L1 6209 6302 0 21 0 0 0 chr3 92429768 92429789 -135094789 + AT_rich Low_complexity Low_complexity 1 21 0 389 303 111 12 chr3 92430001 92430163 -135094415 + MIR SINE MIR 37 214 -48 618 284 35 15 chr3 92430221 92430418 -135094160 + MIR SINE MIR 49 249 -13 273 315 34 0 chr3 92431025 92431114 -135093464 + MIR3 SINE MIR 117 208 0 231 398 10 0 chr3 92432023 92432121 -135092457 + L2 LINE L2 3159 3257 -15 25 0 0 0 chr3 92433228 92433253 -135091325 + AT_rich Low_complexity Low_complexity 1 25 0 1208 258 78 21 chr3 92433498 92434072 -135090506 + L1MC5 LINE L1 7311 7917 -44 327 156 0 0 chr3 92434180 92434241 -135090337 + Alu SINE Alu 2 48 -252 977 135 6 26 chr3 92434243 92434399 -135090179 + AluSg/x SINE Alu 135 287 -23 276 30 0 0 chr3 92434402 92434435 -135090143 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 262 304 88 16 chr3 92434514 92434639 -135089939 + L2 LINE L2 2700 2833 -481 * 500 289 106 33 chr3 92434633 92434870 -135089708 + L2 LINE L2 3017 3235 -78 15249 144 25 38 chr3 92434870 92435424 -135089154 - Tigger4(Zombi) DNA MER2_type 0 2731 2171 249 33 0 0 chr3 92435424 92435454 -135089124 + (TA)n Simple_repeat Simple_repeat 1 30 0 15249 144 25 38 chr3 92435454 92437017 -135087561 - Tigger4(Zombi) DNA MER2_type -560 2171 655 2070 141 3 0 chr3 92437017 92437321 -135087257 - AluSx SINE Alu -7 305 1 15249 144 25 38 chr3 92437321 92437968 -135086610 - Tigger4(Zombi) DNA MER2_type -2076 655 1 500 289 106 33 chr3 92437968 92438003 -135086575 + L2 LINE L2 3235 3309 -4 302 385 26 21 chr3 92438023 92438215 -135086363 - L3 LINE CR1 -88 1489 1297 1641 268 128 18 chr3 92439792 92440348 -135084230 - MLT1E2 LTR MaLR 0 626 10 227 219 0 0 chr3 92440481 92440522 -135084056 - MLT1D LTR MaLR -464 41 1 21 36 0 0 chr3 92440727 92440755 -135083823 + AT_rich Low_complexity Low_complexity 1 28 0 199 362 53 32 chr3 92441307 92441401 -135083177 + MIR SINE MIR 28 123 -139 205 307 147 60 chr3 92443903 92444053 -135080525 - MIR3 SINE MIR -38 170 8 505 324 68 72 chr3 92444193 92444838 -135079740 + L2 LINE L2 2672 3304 -9 884 167 39 39 chr3 92445179 92445383 -135079195 - MER30 DNA MER1_type 0 230 27 276 358 18 9 chr3 92445560 92445669 -135078909 + L2 LINE L2 2712 2821 -493 1520 134 22 0 chr3 92446216 92446440 -135078138 + MER2 DNA MER2_type 3 231 -114 7961 180 97 38 chr3 92446452 92448109 -135076469 - MER52A LTR ERV1 0 1755 1 376 414 6 0 chr3 92448716 92448897 -135075681 + L3 LINE CR1 1312 1493 -84 266 234 16 16 chr3 92450255 92450319 -135074259 + L2 LINE L2 3250 3313 0 545 157 0 0 chr3 92451830 92451919 -135072659 - MLT1E2 LTR MaLR -2 503 415 * 564 265 154 50 chr3 92451917 92452177 -135072401 - MLT1E2 LTR MaLR -339 287 1 538 324 118 0 chr3 92453686 92453890 -135070688 - MIR SINE MIR -15 247 20 452 297 80 17 chr3 92454847 92455022 -135069556 - MIR SINE MIR -72 190 5 916 156 108 38 chr3 92455115 92455327 -135069251 - MLT1B LTR MaLR -163 227 1 436 356 112 24 chr3 92455389 92455881 -135068697 - L2 LINE L2 -1054 2260 1726 1947 161 0 0 chr3 92457445 92457744 -135066834 + AluSx SINE Alu 11 309 -3 3436 83 0 0 chr3 92459160 92459630 -135064948 - L1PA8 LINE L1 0 6172 5703 1333 166 11 26 chr3 92459685 92459956 -135064622 + L1PA16 LINE L1 5900 6166 0 200 51 26 51 chr3 92460353 92460392 -135064186 + (CTGTG)n Simple_repeat Simple_repeat 2 39 0 425 307 64 23 chr3 92461502 92461698 -135062880 - MIR3 SINE MIR -4 204 2 238 389 68 19 chr3 92462729 92462891 -135061687 - MIR3 SINE MIR -14 194 25 668 327 102 32 chr3 92462970 92463490 -135061088 - L2 LINE L2 0 3313 2760 247 265 12 48 chr3 92463516 92463599 -135060979 - L2 LINE L2 -1 3312 3233 2681 253 78 16 chr3 92463631 92464520 -135060058 - L2 LINE L2 -570 2744 1801 319 320 162 15 chr3 92464537 92464734 -135059844 - L2 LINE L2 -182 3131 2906 186 167 0 0 chr3 92464871 92464907 -135059671 + (TAA)n Simple_repeat Simple_repeat 3 38 0 29 0 0 0 chr3 92465034 92465063 -135059515 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr3 92467127 92467154 -135057424 + AT_rich Low_complexity Low_complexity 1 27 0 201 359 72 36 chr3 92468001 92468168 -135056410 - MIR SINE MIR -42 220 48 581 301 49 40 chr3 92468612 92468838 -135055740 + MIR SINE MIR 5 232 -30 462 261 9 0 chr3 92470109 92470224 -135054354 + MLT1A1 LTR MaLR 199 314 -51 1332 233 82 44 chr3 92470598 92471048 -135053530 - MLT1C LTR MaLR 0 467 1 2429 62 7 3 chr3 92471616 92471924 -135052654 + AluY SINE Alu 1 309 -2 2264 191 34 5 chr3 92472569 92473013 -135051565 - L1MA8 LINE L1 -221 6070 5614 2641 89 26 10 chr3 92473016 92473399 -135051179 + MLT2A1 LTR ERVL 1 389 -55 194 146 0 24 chr3 92473400 92473441 -135051137 + (CA)n Simple_repeat Simple_repeat 1 40 0 26 30 0 0 chr3 92474440 92474473 -135050105 + AT_rich Low_complexity Low_complexity 1 33 0 1654 179 10 36 chr3 92474507 92474815 -135049763 + AluJb SINE Alu 1 300 -12 2495 121 5 0 chr3 92474893 92475266 -135049312 + THE1C LTR MaLR 1 375 0 2455 40 3 0 chr3 92477193 92477492 -135047086 - AluY SINE Alu -11 300 1 1373 193 53 8 chr3 92477531 92477796 -135046782 + AluJb SINE Alu 1 277 -35 255 93 0 0 chr3 92477799 92477842 -135046736 + (CAAAA)n Simple_repeat Simple_repeat 1 43 0 624 297 56 17 chr3 92477889 92478121 -135046457 + MIR SINE MIR 7 247 -15 22 43 0 21 chr3 92478138 92478151 -135046427 + AT_rich Low_complexity Low_complexity 1 13 -33 1765 149 4 4 chr3 92478151 92478432 -135046146 + AluSg SINE Alu 1 281 -29 22 43 0 21 chr3 92478432 92478465 -135046113 + AT_rich Low_complexity Low_complexity 13 46 0 1467 176 0 0 chr3 92479013 92479258 -135045320 - Tigger2a DNA MER2_type 0 434 190 430 217 0 52 chr3 92479267 92479382 -135045196 - Tigger2a DNA MER2_type -325 109 1 37 39 0 0 chr3 92480416 92480467 -135044111 + AT_rich Low_complexity Low_complexity 1 51 0 2826 186 6 9 chr3 92482947 92483474 -135041104 + LTR45 LTR ERV1 1 525 0 249 269 0 0 chr3 92484562 92484614 -135039964 + L2 LINE L2 3221 3272 0 352 215 74 27 chr3 92485454 92485603 -135038975 + Charlie1 DNA MER1_type 2442 2597 -164 713 272 61 83 chr3 92485815 92486333 -135038245 + MLT1H LTR MaLR 1 549 0 307 266 25 89 chr3 92486336 92486494 -135038084 - L2 LINE L2 -1 3312 3165 918 311 74 16 chr3 92489336 92489847 -135034731 - Charlie7 DNA MER1_type -2058 554 14 417 268 105 26 chr3 92489876 92490066 -135034512 + MER112 DNA MER1_type 54 258 -2 492 352 108 44 chr3 92490139 92491042 -135033536 - L2 LINE L2 -649 2665 1705 241 289 0 0 chr3 92491251 92491303 -135033275 - MLT1G1 LTR MaLR -465 130 79 1549 293 36 7 chr3 92491314 92491755 -135032823 + MLT1H1 LTR MaLR 102 555 0 31 0 0 0 chr3 92492107 92492138 -135032440 + AT_rich Low_complexity Low_complexity 1 31 0 603 335 93 29 chr3 92493581 92493894 -135030684 - L2 LINE L2 -1 3312 2980 376 296 106 0 chr3 92494038 92494180 -135030398 - L2 LINE L2 -480 2834 2678 801 299 116 36 chr3 92495656 92496230 -135028348 - L2 LINE L2 -5 3308 2678 33 43 0 0 chr3 92496319 92496366 -135028212 + AT_rich Low_complexity Low_complexity 1 47 0 255 103 0 0 chr3 92496926 92496965 -135027613 + (TG)n Simple_repeat Simple_repeat 2 40 0 237 342 25 0 chr3 92497595 92497674 -135026904 - MIR SINE MIR -111 151 71 1460 196 3 24 chr3 92497786 92498082 -135026496 - AluJb SINE Alu -22 290 1 430 271 121 89 chr3 92499120 92499492 -135025086 - MLT1J LTR MaLR 0 511 128 3055 41 0 0 chr3 92500914 92501283 -135023295 + L1PA4 LINE L1 5678 6046 -109 607 30 0 5 chr3 92501388 92501472 -135023106 + L1PA3 LINE L1 6078 6174 0 37 39 0 0 chr3 92502315 92502366 -135022212 + AT_rich Low_complexity Low_complexity 1 51 0 904 292 52 6 chr3 92502583 92502932 -135021646 - L1ME2 LINE L1 -47 6186 5822 * 1221 141 0 5 chr3 92502911 92503102 -135021476 - L1PA16 LINE L1 -188 6047 5858 293 254 35 29 chr3 92503096 92503269 -135021309 - L1ME2 LINE L1 -1589 4626 4453 * 824 306 138 11 chr3 92503300 92504067 -135020511 - L1ME2 LINE L1 -3325 2890 2078 23 86 0 0 chr3 92504123 92504181 -135020397 + AT_rich Low_complexity Low_complexity 1 58 0 184 385 52 17 chr3 92504698 92504872 -135019706 + MIR SINE MIR 12 191 -71 211 206 10 98 chr3 92504883 92504985 -135019593 - MIR SINE MIR 0 262 170 369 177 0 0 chr3 92505152 92505231 -135019347 + (CA)n Simple_repeat Simple_repeat 2 80 0 186 341 49 37 chr3 92505239 92505403 -135019175 - MIR SINE MIR -30 232 67 23 0 0 0 chr3 92505764 92505787 -135018791 + AT_rich Low_complexity Low_complexity 1 23 0 3987 202 1 15 chr3 92506114 92506937 -135017641 + HERVH LTR ERV1 2261 3072 -4641 848 251 9 5 chr3 92506926 92507137 -135017441 + HERVH LTR ERV1 4518 4729 -2984 * 258 296 49 21 chr3 92507643 92507785 -135016793 + HERVH LTR ERV1 7568 7713 0 1522 164 64 104 chr3 92507785 92508254 -135016324 + LTR7 LTR ERV1 1 450 0 405 102 0 0 chr3 92510846 92510905 -135013673 + (CA)n Simple_repeat Simple_repeat 2 60 0 2708 100 39 0 chr3 92510929 92511290 -135013288 + THE1C LTR MaLR 1 375 0 418 292 29 83 chr3 92512174 92512495 -135012083 + MLT1G3 LTR MaLR 3 273 -257 1118 222 43 88 chr3 92512623 92513064 -135011514 + LTR7 LTR ERV1 30 450 0 926 174 58 0 chr3 92513081 92513271 -135011307 + HERVH LTR ERV1 17 217 -7496 * 3432 218 37 52 chr3 92513253 92514993 -135009585 + HERVH LTR ERV1 737 2226 -5487 190 277 265 0 chr3 92515661 92515744 -135008834 - MER5A DNA MER1_type -1 188 84 213 333 83 25 chr3 92516397 92516517 -135008061 + L2 LINE L2 2767 2893 -421 1130 39 0 0 chr3 92516550 92516678 -135007900 - AluYa5/8 SINE Alu -16 295 168 966 256 8 8 chr3 92516678 92516936 -135007642 - L1MDa LINE L1 -3273 3267 3010 * 2894 212 45 10 chr3 92516931 92517619 -135006959 - L1MDa LINE L1 -5402 1138 13 1562 173 28 35 chr3 92518992 92519281 -135005297 - AluJo SINE Alu -17 295 9 939 253 65 4 chr3 92519322 92519583 -135004995 + LTR16C LTR ERVL 181 457 -34 2529 131 72 15 chr3 92519774 92520179 -135004399 + MSTA LTR MaLR 1 428 0 207 259 19 28 chr3 92522204 92522312 -135002266 - L3 LINE CR1 -316 1261 1155 283 176 25 22 chr3 92522342 92522432 -135002146 + MLT1H LTR MaLR 476 547 -2 276 239 97 9 chr3 92522523 92522636 -135001942 - Charlie7 DNA MER1_type -6 2606 2484 232 252 112 37 chr3 92522618 92522725 -135001853 - Charlie7 DNA MER1_type -2455 157 43 * 212 250 0 0 chr3 92523037 92523077 -135001501 + L2 LINE L2 3262 3301 -12 2342 99 3 0 chr3 92523151 92523455 -135001123 - AluSg SINE Alu -4 306 2 2383 94 0 13 chr3 92523456 92523764 -135000814 - AluSg SINE Alu -6 304 1 480 284 75 33 chr3 92523820 92523992 -135000586 - MLT1K LTR MaLR -228 360 197 1395 132 5 0 chr3 92523992 92524204 -135000374 + L1PA15 LINE L1 5951 6163 -2 480 284 75 33 chr3 92524204 92524289 -135000289 - MLT1K LTR MaLR -391 197 22 1984 113 0 11 chr3 92524398 92524680 -134999898 + L1PA15 LINE L1 5884 6162 -3 655 208 0 75 chr3 92524905 92525064 -134999514 - MER20 DNA MER1_type -43 176 30 800 163 23 47 chr3 92525097 92525269 -134999309 + MER53 DNA DNA 22 189 0 253 162 0 0 chr3 92525271 92525308 -134999270 - MER20 DNA MER1_type -182 37 1 592 227 18 0 chr3 92525312 92525422 -134999156 - MER81 DNA DNA -1 113 2 856 180 124 41 chr3 92526336 92526530 -134998048 - MER63A DNA MER1_type 0 210 1 812 248 46 14 chr3 92527555 92527773 -134996805 - MIR SINE MIR -1 261 37 308 285 57 0 chr3 92528357 92528480 -134996098 - LTR16C LTR ERVL -1 490 361 281 222 48 0 chr3 92529020 92529083 -134995495 - L2 LINE L2 0 3272 3207 255 202 60 36 chr3 92529085 92529169 -134995409 + L1MC/D LINE L1 5719 5804 -2004 198 103 0 0 chr3 92529254 92529283 -134995295 + (A)n Simple_repeat Simple_repeat 1 29 0 410 251 30 64 chr3 92529395 92529598 -134994980 + L2 LINE L2 3118 3313 0 811 169 139 6 chr3 92531025 92531191 -134993387 + MLT1A2 LTR MaLR 187 374 0 551 180 113 67 chr3 92531191 92531353 -134993225 + MLT1F LTR MaLR 340 514 -28 2036 166 42 14 chr3 92531353 92531708 -134992870 - MLT1A1 LTR MaLR 0 365 1 551 180 113 67 chr3 92531708 92531739 -134992839 + MLT1F LTR MaLR 514 542 0 2265 80 7 10 chr3 92532256 92532556 -134992022 - AluY SINE Alu -12 299 1 1949 232 69 20 chr3 92532610 92533119 -134991459 - MLT1H LTR MaLR -2 547 14 296 297 135 42 chr3 92533709 92533901 -134990677 + L2 LINE L2 3104 3313 0 1568 145 61 81 chr3 92534192 92534502 -134990076 + AluJb SINE Alu 1 304 -8 378 299 127 26 chr3 92534696 92535004 -134989574 + L1MB3 LINE L1 5485 5823 -298 1253 148 0 87 chr3 92536207 92536436 -134988142 - AluJb SINE Alu -103 209 1 235 100 0 50 chr3 92537570 92537603 -134986975 - L1MB3 LINE L1 -232 5951 5919 1143 118 6 6 chr3 92537603 92537781 -134986797 + L1MB3 LINE L1 6006 6183 0 2146 123 16 87 chr3 92538020 92538458 -134986120 - L1MA2 LINE L1 0 6304 5898 809 256 105 22 chr3 92538580 92538857 -134985721 - L2 LINE L2 -2325 989 690 1491 280 71 26 chr3 92539024 92539517 -134985061 - L2 LINE L2 -2611 703 189 479 329 53 9 chr3 92541667 92541892 -134982686 - MIR SINE MIR -9 253 19 183 186 0 70 chr3 92543101 92543131 -134981447 - L2 LINE L2 -337 2976 2948 647 62 0 12 chr3 92543131 92543212 -134981366 - MADE1 DNA Mariner 0 80 1 183 186 0 70 chr3 92543212 92543224 -134981354 - L2 LINE L2 -365 2948 2937 214 267 317 8 chr3 92543423 92543543 -134981035 - L2 LINE L2 0 3272 3116 282 227 3 0 chr3 92543874 92543939 -134980639 - MLT1K LTR MaLR -5 610 526 459 209 29 9 chr3 92544200 92544305 -134980273 - MLT1L LTR MaLR -367 248 142 2460 228 34 51 chr3 92545233 92545943 -134978635 - L1ME3A LINE L1 -1 6169 5472 275 287 2 10 chr3 92546596 92546694 -134977884 + MLT1I LTR MaLR 318 401 -8 721 167 104 0 chr3 92548403 92548547 -134976031 + MER3 DNA MER1_type 51 209 0 411 252 24 24 chr3 92549194 92549321 -134975257 + MIR SINE MIR 21 147 -115 306 352 11 0 chr3 92549530 92549621 -134974957 - MIR SINE MIR -59 149 58 200 176 0 0 chr3 92549804 92549838 -134974740 + (CA)n Simple_repeat Simple_repeat 2 35 0 204 222 0 0 chr3 92549934 92549970 -134974608 + (TG)n Simple_repeat Simple_repeat 2 37 0 375 254 195 53 chr3 92552565 92552888 -134971690 - L2 LINE L2 0 3313 2945 193 313 0 30 chr3 92554990 92555057 -134969521 - L3 LINE CR1 -10 1567 1503 339 235 31 20 chr3 92555594 92555692 -134968886 - MLT2F LTR ERVL 0 663 565 301 409 0 18 chr3 92555747 92555911 -134968667 + C-rich Low_complexity Low_complexity 4 164 0 1345 226 78 9 chr3 92556604 92556923 -134967655 + MER58B DNA MER1_type 1 341 0 425 151 12 0 chr3 92657545 92657631 -134866947 + CT-rich Low_complexity Low_complexity 4 90 0 1962 157 0 0 chr3 92658372 92658678 -134865900 - AluSx SINE Alu -6 306 1 307 208 0 0 chr3 92659263 92659316 -134865262 - L2 LINE L2 -6 3266 3214 185 389 0 0 chr3 92659871 92659925 -134864653 - L2 LINE L2 -33 3239 3186 4750 82 6 0 chr3 92660388 92661033 -134863545 - L1PA7 LINE L1 0 6154 5506 2773 207 89 99 chr3 92661133 92661730 -134862848 + L1MDa LINE L1 1074 1675 -4865 499 196 59 0 chr3 92661730 92661832 -134862746 + MER1B DNA MER1_type 66 173 -124 2773 207 89 99 chr3 92661832 92662474 -134862104 + L1MDa LINE L1 1675 2401 -4139 1706 188 52 69 chr3 92662478 92662899 -134861679 + L1MD2 LINE L1 5913 6326 -33 1605 141 171 7 chr3 92663351 92663656 -134860922 - MSTA LTR MaLR -73 355 1 497 254 35 109 chr3 92663656 92663938 -134860640 - MER21B LTR ERV1 -580 283 23 413 325 25 12 chr3 92663960 92664120 -134860458 - MLT1K LTR MaLR -58 530 369 21 0 0 0 chr3 92664572 92664593 -134859985 + AT_rich Low_complexity Low_complexity 1 21 0 2139 236 9 4 chr3 92665873 92666407 -134858171 - L1 LINE L1 -775 5371 4835 249 103 0 52 chr3 92666889 92666947 -134857631 + (TA)n Simple_repeat Simple_repeat 1 55 0 724 264 54 13 chr3 92667899 92668200 -134856378 - MLT1H1 LTR MaLR -31 524 162 2267 140 72 5 chr3 92668205 92668606 -134855972 - MSTA LTR MaLR 0 428 1 6194 189 39 3 chr3 92668616 92669770 -134854808 - MSTA-int LTR MaLR -5 1646 451 3403 79 0 0 chr3 92669769 92670214 -134854364 + L1PA7 LINE L1 5604 6048 -106 * 1811 87 0 12 chr3 92670314 92670556 -134854022 + AluY SINE Alu 47 285 -26 21 36 0 0 chr3 92670556 92670584 -134853994 + AT_rich Low_complexity Low_complexity 1 28 0 269 265 24 0 chr3 92670947 92671030 -134853548 + MLT1I LTR MaLR 89 173 -236 23 54 0 0 chr3 92672643 92672680 -134851898 + AT_rich Low_complexity Low_complexity 1 37 0 23 68 0 0 chr3 92672794 92672838 -134851740 + AT_rich Low_complexity Low_complexity 1 44 0 203 204 19 0 chr3 92673352 92673406 -134851172 + (TG)n Simple_repeat Simple_repeat 2 56 0 34 42 0 0 chr3 92673523 92673571 -134851007 + AT_rich Low_complexity Low_complexity 1 48 0 6534 104 12 5 chr3 92674112 92675126 -134849452 - L1P LINE L1 -826 5320 4300 * 7933 76 2 149 chr3 92675123 92676644 -134847934 + L1P LINE L1 3010 4307 -1839 583 133 0 0 chr3 92678471 92678569 -134846009 + AluY SINE Alu 209 306 -5 973 306 55 26 chr3 92678817 92679272 -134845306 + L2 LINE L2 2149 2616 -698 21 36 0 0 chr3 92679687 92679715 -134844863 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 92679980 92680002 -134844576 + AT_rich Low_complexity Low_complexity 1 22 0 33 56 0 0 chr3 92680104 92680158 -134844420 + AT_rich Low_complexity Low_complexity 1 54 0 23 33 0 0 chr3 92680175 92680205 -134844373 + AT_rich Low_complexity Low_complexity 1 30 0 218 361 24 12 chr3 92680214 92680297 -134844281 + L2 LINE L2 3137 3220 -52 1879 279 69 59 chr3 92680405 92681205 -134843373 + L2 LINE L2 2236 3057 -256 1448 197 68 29 chr3 92681205 92681556 -134843022 + MLT1A1 LTR MaLR 1 365 0 1879 279 69 59 chr3 92681556 92681816 -134842762 + L2 LINE L2 3057 3313 0 2309 98 7 3 chr3 92682482 92682789 -134841789 + AluSx SINE Alu 1 308 -4 232 268 80 9 chr3 92682848 92682960 -134841618 + L1ME4a LINE L1 5977 6096 -25 549 176 0 0 chr3 92683690 92683781 -134840797 - L1M2 LINE L1 -506 5785 5695 5460 18 3 0 chr3 92683889 92684517 -134840061 + L1PA4 LINE L1 5526 6155 0 206 305 191 15 chr3 92684594 92684725 -134839853 - MER91A DNA MER1_type -23 173 20 1933 96 19 67 chr3 92685328 92685641 -134838937 + AluSc SINE Alu 1 298 -11 216 135 0 0 chr3 92685642 92685679 -134838899 + (GGAA)n Simple_repeat Simple_repeat 3 39 0 2209 70 44 0 chr3 92685679 92685977 -134838601 + AluY SINE Alu 1 311 0 2052 116 0 31 chr3 92685986 92686306 -134838272 + AluSg SINE Alu 1 310 0 1494 200 88 19 chr3 92686575 92686940 -134837638 + MLT1B LTR MaLR 1 390 0 201 278 0 42 chr3 92687024 92687096 -134837482 - L2 LINE L2 0 3313 3245 517 221 55 39 chr3 92687200 92687327 -134837251 + FLAM_A SINE Alu 5 133 0 1963 116 12 50 chr3 92687569 92687906 -134836672 - L1PB3 LINE L1 -3 6151 5828 271 244 99 15 chr3 92688011 92688177 -134836401 + L1MA8 LINE L1 5890 6068 -223 448 148 37 37 chr3 92688182 92688290 -134836288 + L1MA8 LINE L1 6167 6274 -17 908 106 0 0 chr3 92688349 92688490 -134836088 + L1MA5 LINE L1 6158 6298 -2 209 357 143 18 chr3 92688903 92689015 -134835563 - L2 LINE L2 -6 3266 3141 264 314 40 16 chr3 92689890 92690014 -134834564 + MLT1J2 LTR MaLR 267 393 -57 475 186 20 0 chr3 92691917 92692019 -134832559 + L1PB3 LINE L1 6044 6147 -7 21 36 0 0 chr3 92692081 92692109 -134832469 + AT_rich Low_complexity Low_complexity 1 28 0 463 316 29 7 chr3 92692218 92692357 -134832221 + LTR33 LTR ERVL 56 197 -324 475 292 30 30 chr3 92692379 92692581 -134831997 + LTR33 LTR ERVL 314 515 -6 21 0 0 0 chr3 92692910 92692931 -134831647 + AT_rich Low_complexity Low_complexity 1 21 0 271 317 166 0 chr3 92693498 92693643 -134830935 + MIR SINE MIR 40 208 -54 184 333 60 0 chr3 92694217 92694301 -134830277 + MER5C DNA MER1_type 17 105 -219 2145 125 0 0 chr3 92695167 92695481 -134829097 - AluSx SINE Alu 0 314 1 417 189 233 6 chr3 92695903 92696062 -134828516 + MER5C DNA MER1_type 130 324 0 1663 304 103 25 chr3 92696903 92698044 -134826534 + L2 LINE L2 2084 3313 0 1977 208 48 64 chr3 92698365 92698928 -134825650 + MLT2B3 LTR ERVL 1 554 0 22 0 0 0 chr3 92701668 92701690 -134822888 + AT_rich Low_complexity Low_complexity 1 22 0 526 253 91 45 chr3 92701711 92701909 -134822669 - L2 LINE L2 0 3313 3107 1775 198 22 40 chr3 92701920 92701954 -134822624 - MLT2D LTR ERVL -7 407 374 462 36 0 0 chr3 92701954 92702010 -134822568 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 1775 198 22 40 chr3 92702010 92702380 -134822198 - MLT2D LTR ERVL -40 374 10 21 0 0 0 chr3 92702804 92702825 -134821753 + AT_rich Low_complexity Low_complexity 1 21 0 1722 162 10 10 chr3 92703417 92703719 -134820859 - AluJb SINE Alu -10 302 1 281 250 0 0 chr3 92704410 92704462 -134820116 + MER5B DNA MER1_type 1 52 -126 489 127 0 0 chr3 92704625 92704704 -134819874 + (GGAA)n Simple_repeat Simple_repeat 1 79 0 206 125 0 25 chr3 92704733 92704773 -134819805 + (GGAA)n Simple_repeat Simple_repeat 1 39 0 895 128 0 0 chr3 92705086 92705252 -134819326 + AluSg/x SINE Alu 157 322 0 2104 142 0 0 chr3 92705692 92706002 -134818576 + AluSq SINE Alu 1 310 -3 290 218 0 0 chr3 92706023 92706078 -134818500 + MER3 DNA MER1_type 1 55 -154 447 245 21 28 chr3 92706095 92706238 -134818340 - MER3 DNA MER1_type -27 182 41 902 94 11 22 chr3 92706676 92706857 -134817721 + (TAGA)n Simple_repeat Simple_repeat 2 180 0 363 233 85 117 chr3 92707365 92707742 -134816836 - L1MC5 LINE L1 -783 7178 6814 273 277 50 33 chr3 92707756 92707924 -134816654 - L1MC5 LINE L1 -1226 6735 6634 1412 196 41 49 chr3 92709156 92709524 -134815054 - MLT1A1 LTR MaLR 0 365 1 24 0 0 0 chr3 92709660 92709684 -134814894 + AT_rich Low_complexity Low_complexity 1 24 0 1835 120 7 33 chr3 92709684 92709985 -134814593 - AluY SINE Alu -18 293 1 390 354 48 7 chr3 92710098 92710245 -134814333 - MIR SINE MIR -39 223 71 1017 142 0 0 chr3 92711797 92711945 -134812633 - AluJb SINE Alu -25 287 140 27 0 0 0 chr3 92711968 92711995 -134812583 + AT_rich Low_complexity Low_complexity 1 27 0 224 170 149 75 chr3 92715016 92715110 -134809468 + L2 LINE L2 2885 2985 -328 276 194 16 16 chr3 92715683 92715745 -134808833 + L3 LINE CR1 1513 1574 -3 26 82 0 0 chr3 92717625 92717686 -134806892 + AT_rich Low_complexity Low_complexity 1 61 0 1377 119 0 158 chr3 92717907 92718269 -134806309 - AluY SINE Alu -6 305 1 1859 47 0 17 chr3 92719325 92719557 -134805021 - AluY SINE Alu -83 228 1 283 256 33 8 chr3 92719841 92719962 -134804616 + (TA)n Simple_repeat Simple_repeat 1 124 0 9890 96 17 3 chr3 92720336 92722584 -134801994 - L1PA7 LINE L1 -1 6153 3884 2076 128 0 7 chr3 92722591 92722897 -134801681 - AluSq SINE Alu -9 304 1 22 0 0 0 chr3 92723508 92723530 -134801048 + AT_rich Low_complexity Low_complexity 1 22 0 1368 144 0 10 chr3 92723710 92723956 -134800622 - AluSg/x SINE Alu 0 326 83 2199 169 28 25 chr3 92724160 92724593 -134799985 - Tigger2a DNA MER2_type 0 434 1 564 234 52 68 chr3 92725385 92725693 -134798885 - L1MC5 LINE L1 -573 7388 7086 3914 204 17 5 chr3 92726512 92727264 -134797314 - MER52A LTR ERV1 0 1755 995 2783 181 28 6 chr3 92727369 92728030 -134796548 - MER52A LTR ERV1 -65 1213 879 248 276 0 0 chr3 92728016 92728074 -134796504 - MER52A LTR ERV1 -1697 58 1 * 23 68 0 0 chr3 92729781 92729825 -134794753 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr3 92731042 92731064 -134793514 + AT_rich Low_complexity Low_complexity 1 22 0 600 306 99 5 chr3 92731764 92731986 -134792592 + MIR SINE MIR 12 254 -8 34 65 0 0 chr3 92732038 92732100 -134792478 + AT_rich Low_complexity Low_complexity 1 62 0 447 394 58 28 chr3 92734483 92734917 -134789661 + L3 LINE CR1 35 481 -1096 266 227 40 13 chr3 92734915 92734990 -134789588 + L2 LINE L2 1875 1951 -1363 * 1994 128 0 3 chr3 92736033 92736361 -134788217 + AluSx SINE Alu 1 312 0 1893 119 16 55 chr3 92737839 92738151 -134786427 + AluSx SINE Alu 1 300 -12 784 283 56 0 chr3 92738529 92738762 -134785816 - MIR SINE MIR -1 261 16 21 36 0 0 chr3 92739986 92740014 -134784564 + AT_rich Low_complexity Low_complexity 1 28 0 380 203 16 16 chr3 92740368 92740496 -134784082 + (TA)n Simple_repeat Simple_repeat 1 128 0 270 159 56 0 chr3 92740538 92740645 -134783933 + (TA)n Simple_repeat Simple_repeat 1 113 0 276 30 0 0 chr3 92740851 92740884 -134783694 + (TG)n Simple_repeat Simple_repeat 2 34 0 1627 311 138 32 chr3 92740990 92742149 -134782429 - L2 LINE L2 -141 3172 1885 365 267 31 128 chr3 92742547 92742805 -134781773 - L2 LINE L2 -540 2774 2542 2208 94 0 3 chr3 92743423 92743730 -134780848 - AluY SINE Alu -5 306 1 22 35 0 0 chr3 92745418 92745447 -134779131 + AT_rich Low_complexity Low_complexity 1 29 0 2154 98 3 0 chr3 92747341 92747628 -134776950 + AluSg SINE Alu 1 288 -22 30 27 0 0 chr3 92749806 92749843 -134774735 + AT_rich Low_complexity Low_complexity 1 37 0 824 280 66 105 chr3 92749874 92750116 -134774462 - L2 LINE L2 -15 3298 3048 1818 153 25 14 chr3 92750116 92750469 -134774109 + L1MA2 LINE L1 5948 6304 0 824 280 66 105 chr3 92750469 92751091 -134773487 - L2 LINE L2 -265 3048 2442 1285 167 5 0 chr3 92751537 92751741 -134772837 + AluJo SINE Alu 1 205 -107 21 57 0 0 chr3 92753232 92753267 -134771311 + AT_rich Low_complexity Low_complexity 1 35 0 21 36 0 0 chr3 92753975 92754003 -134770575 + AT_rich Low_complexity Low_complexity 1 28 0 278 332 99 20 chr3 92757921 92758123 -134766455 - LTR33 LTR ERVL 0 521 304 202 143 29 0 chr3 92758364 92758399 -134766179 + CT-rich Low_complexity Low_complexity 4 39 0 261 0 0 0 chr3 92758420 92758449 -134766129 + (CA)n Simple_repeat Simple_repeat 1 29 0 3445 173 82 3 chr3 92759706 92760365 -134764213 - MER50 LTR ERV1 -23 711 1 202 200 0 0 chr3 92760742 92760787 -134763791 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 267 155 35 17 chr3 92760909 92760967 -134763611 - MLT1K LTR MaLR -3 585 527 943 244 81 78 chr3 92760995 92761454 -134763124 - MER21B LTR ERV1 -124 739 280 247 236 0 18 chr3 92762078 92762133 -134762445 - U4 snRNA snRNA -79 66 13 25 31 0 0 chr3 92762254 92762286 -134762292 + AT_rich Low_complexity Low_complexity 1 32 0 27 0 0 0 chr3 92762480 92762507 -134762071 + AT_rich Low_complexity Low_complexity 1 27 0 633 241 126 11 chr3 92762995 92763169 -134761409 - MLT1J LTR MaLR -317 194 1 2317 91 0 13 chr3 92764748 92765055 -134759523 - AluSc SINE Alu -6 303 1 318 50 0 0 chr3 92765702 92765742 -134758836 + (TTTG)n Simple_repeat Simple_repeat 2 41 0 273 29 0 0 chr3 92765975 92766009 -134758569 + (TC)n Simple_repeat Simple_repeat 2 35 0 250 169 24 48 chr3 92766077 92766160 -134758418 + (TA)n Simple_repeat Simple_repeat 2 82 0 34 0 0 0 chr3 92766303 92766337 -134758241 + AT_rich Low_complexity Low_complexity 1 34 0 233 292 14 0 chr3 92766347 92766419 -134758159 - L1ME LINE L1 -406 5758 5686 230 298 39 29 chr3 92766986 92767090 -134757488 + L2 LINE L2 2597 2701 -613 367 300 50 50 chr3 92768148 92768328 -134756250 - MIR SINE MIR -26 236 57 460 256 23 8 chr3 92769652 92769781 -134754797 + MER94 DNA DNA 1 131 -3 23 0 0 0 chr3 92771520 92771543 -134753035 + AT_rich Low_complexity Low_complexity 1 23 0 1718 146 11 0 chr3 92771545 92771868 -134752710 + AluSx SINE Alu 1 326 0 400 149 0 23 chr3 92772051 92772138 -134752440 + (TA)n Simple_repeat Simple_repeat 2 86 0 323 264 0 22 chr3 92772140 92772231 -134752347 - L1MC4 LINE L1 -1339 6703 6615 310 283 0 22 chr3 92772171 92772263 -134752315 + L1MC4 LINE L1 6614 6703 -1339 * 412 290 32 16 chr3 92772619 92772743 -134751835 + MIR SINE MIR 19 144 -64 1359 185 0 40 chr3 92772889 92773165 -134751413 - AluJb SINE Alu -14 298 34 252 86 0 0 chr3 92774573 92774608 -134749970 + (T)n Simple_repeat Simple_repeat 1 35 0 341 256 128 81 chr3 92775557 92775979 -134748599 - MLT1J1 LTR MaLR 0 446 5 186 333 29 48 chr3 92776279 92776384 -134748194 + L2 LINE L2 3165 3267 -46 231 329 0 0 chr3 92777531 92777610 -134746968 + (CATATA)n Simple_repeat Simple_repeat 4 82 0 261 0 0 0 chr3 92778916 92778945 -134745633 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr3 92779023 92779044 -134745534 + AT_rich Low_complexity Low_complexity 1 21 0 1827 145 7 0 chr3 92779824 92780133 -134744445 - AluSx SINE Alu 0 311 1 1846 138 55 28 chr3 92780929 92781290 -134743288 + THE1C LTR MaLR 5 375 0 2466 122 14 0 chr3 92781940 92782308 -134742270 - THE1C LTR MaLR -2 373 1 303 237 141 59 chr3 92783571 92783706 -134740872 + MLT1H LTR MaLR 310 455 -94 23 0 0 0 chr3 92784163 92784186 -134740392 + AT_rich Low_complexity Low_complexity 1 23 0 2110 90 65 3 chr3 92784974 92785264 -134739314 + AluSc SINE Alu 2 309 0 218 250 0 18 chr3 92786613 92786669 -134737909 + (CACG)n Simple_repeat Simple_repeat 1 55 0 465 19 0 0 chr3 92787105 92787159 -134737419 + (TCTA)n Simple_repeat Simple_repeat 1 54 0 2936 193 29 6 chr3 92787278 92787927 -134736651 - L1 LINE L1 -2410 3736 3073 23 54 0 0 chr3 92788754 92788791 -134735787 + AT_rich Low_complexity Low_complexity 1 37 0 1134 235 4 13 chr3 92790039 92790277 -134734301 + MER8 DNA MER2_type 2 237 -2 345 382 80 27 chr3 92790292 92790554 -134734024 + L2 LINE L2 2694 2969 -345 205 343 83 71 chr3 92790609 92790778 -134733800 + L2 LINE L2 3102 3272 0 24 0 0 0 chr3 92791506 92791530 -134733048 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr3 92792295 92792326 -134732252 + AT_rich Low_complexity Low_complexity 1 31 0 581 105 11 0 chr3 92794082 92794177 -134730401 + (GA)n Simple_repeat Simple_repeat 1 96 0 2178 81 3 3 chr3 92794296 92794601 -134729977 - AluY SINE Alu 0 305 1 704 258 52 0 chr3 92796070 92796264 -134728314 + MER63A DNA MER1_type 1 204 -6 23 0 0 0 chr3 92797518 92797541 -134727037 + AT_rich Low_complexity Low_complexity 1 23 0 992 178 0 10 chr3 92797541 92797749 -134726829 - L1MA7 LINE L1 -6 6285 6080 306 260 52 0 chr3 92798496 92798573 -134726005 + MIR SINE MIR 72 152 -56 2188 127 3 0 chr3 92799444 92799752 -134724826 + AluSc SINE Alu 1 309 0 11364 89 10 3 chr3 92799893 92800738 -134723840 - L1PA7 LINE L1 0 6469 5631 180 0 0 0 chr3 92800738 92800758 -134723820 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 11364 89 10 3 chr3 92800758 92802293 -134722285 - L1PA7 LINE L1 -838 5631 4074 8173 118 7 0 chr3 92802293 92803065 -134721513 - L1PA7 LINE L1 -5272 1189 405 243 0 0 0 chr3 92803065 92803092 -134721486 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 8173 118 7 0 chr3 92803092 92803495 -134721083 - L1PA7 LINE L1 -6056 405 6 282 246 18 9 chr3 92804227 92804337 -134720241 + (TA)n Simple_repeat Simple_repeat 2 112 0 211 337 147 11 chr3 92805419 92805514 -134719064 + L2 LINE L2 3198 3305 -8 237 119 0 0 chr3 92805628 92805670 -134718908 + (A)n Simple_repeat Simple_repeat 1 42 0 24 0 0 0 chr3 92806084 92806108 -134718470 + AT_rich Low_complexity Low_complexity 1 24 0 34 0 0 0 chr3 92809339 92809373 -134715205 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr3 92809639 92809661 -134714917 + AT_rich Low_complexity Low_complexity 1 22 0 1862 152 3 10 chr3 92809715 92810011 -134714567 - AluSx SINE Alu -18 294 1 562 240 16 0 chr3 93010158 93010279 -134514299 - MLT1A2 LTR MaLR -251 123 1 270 312 123 0 chr3 93010586 93010724 -134513854 + MLT1I LTR MaLR 255 409 0 528 296 126 17 chr3 93010764 93011065 -134513513 - L1ME LINE L1 -515 5655 5321 374 102 0 0 chr3 93011230 93011289 -134513289 - L1PA6 LINE L1 -3 6151 6093 303 229 169 0 chr3 93011839 93011922 -134512656 + MIR SINE MIR 16 112 -150 189 0 0 0 chr3 93012148 93012169 -134512409 + (A)n Simple_repeat Simple_repeat 1 21 0 32 0 0 0 chr3 93013179 93013211 -134511367 + AT_rich Low_complexity Low_complexity 1 32 0 236 100 25 0 chr3 93013357 93013397 -134511181 + (TCTA)n Simple_repeat Simple_repeat 3 43 0 1160 195 89 45 chr3 93013514 93013873 -134510705 + THE1C LTR MaLR 1 375 0 1357 221 74 2 chr3 93013954 93014348 -134510230 - L1MD3 LINE L1 -12 7983 7562 * 29763 115 22 58 chr3 93014343 93020722 -134503856 - L1PA7 LINE L1 -3 6151 18 476 250 55 43 chr3 93020765 93020929 -134503649 + MLT1D LTR MaLR 1 166 -339 238 143 0 0 chr3 93020928 93020970 -134503608 - MADE1 DNA Mariner -37 43 2 * 375 267 0 10 chr3 93020970 93021064 -134503514 + MLT1D LTR MaLR 413 505 0 235 304 0 0 chr3 93021583 93021639 -134502939 + (CATA)n Simple_repeat Simple_repeat 4 59 0 323 292 90 38 chr3 93021926 93022214 -134502364 + L2 LINE L2 1730 2032 -1282 1025 179 0 108 chr3 93022676 93022944 -134501634 + AluJo SINE Alu 70 308 -4 980 219 137 44 chr3 93022946 93023379 -134501199 + L1MC4 LINE L1 7572 8035 -7 32 26 0 0 chr3 93024191 93024230 -134500348 + AT_rich Low_complexity Low_complexity 1 39 0 1625 227 73 33 chr3 93024912 93025403 -134499175 - MER39 LTR ERV1 -1 706 1 2246 157 3 3 chr3 93025427 93025791 -134498787 + THE1B LTR MaLR 1 364 0 234 303 90 16 chr3 93025825 93025947 -134498631 - MIR SINE MIR -74 188 58 718 160 38 0 chr3 93026670 93026801 -134497777 + MLT1C LTR MaLR 1 136 -331 1247 194 38 47 chr3 93026821 93026865 -134497713 + L1MA9 LINE L1 4801 4844 -1302 1588 186 21 12 chr3 93026865 93027198 -134497380 - MER44D DNA MER2_type -1 608 3 1247 194 38 47 chr3 93027198 93027494 -134497084 + L1MA9 LINE L1 4844 5138 -1008 * 3726 207 27 20 chr3 93027488 93027806 -134496772 + L1MA9 LINE L1 5353 5667 -645 2325 137 11 16 chr3 93027806 93028172 -134496406 + THE1B LTR MaLR 1 364 0 3726 207 27 20 chr3 93028172 93028287 -134496291 + L1MA9 LINE L1 5667 5780 -532 288 120 0 0 chr3 93028287 93028337 -134496241 + (CA)n Simple_repeat Simple_repeat 1 50 0 3726 207 27 20 chr3 93028337 93028828 -134495750 + L1MA9 LINE L1 5780 6284 -28 1749 162 28 17 chr3 93028844 93029134 -134495444 + AluSx SINE Alu 3 295 -17 933 210 109 16 chr3 93029296 93029544 -134495034 + MLT1C LTR MaLR 197 467 0 831 216 114 26 chr3 93030266 93030493 -134494085 - AluJo SINE Alu -65 247 1 183 260 91 13 chr3 93030844 93030921 -134493657 + L3 LINE CR1 1271 1353 -224 972 196 29 0 chr3 93031341 93031545 -134493033 - L1MA3 LINE L1 -199 6106 5897 33 85 0 0 chr3 93032575 93032657 -134491921 + AT_rich Low_complexity Low_complexity 1 82 0 1973 183 17 33 chr3 93033618 93034038 -134490540 - MLT2D LTR ERVL -1 413 1 185 360 60 20 chr3 93034157 93034257 -134490321 + MIR SINE MIR 45 148 -114 4415 169 34 53 chr3 93036365 93036708 -134487870 - L1MA9 LINE L1 -81 6231 5883 2553 65 0 0 chr3 93036708 93037014 -134487564 - AluY SINE Alu -5 306 1 4415 169 34 53 chr3 93037014 93037270 -134487308 - L1MA9 LINE L1 -429 5883 5624 2906 178 64 3 chr3 93037270 93037867 -134486711 + LTR24C LTR ERV1 3 635 0 4415 169 34 53 chr3 93037867 93038263 -134486315 - L1MA9 LINE L1 -688 5624 5254 3699 188 28 6 chr3 93038270 93039059 -134485519 - L1MA9 LINE L1 -931 5215 4410 1428 258 84 18 chr3 93039059 93039554 -134485024 + LTR27 LTR ERV1 3 1231 -147 1971 241 11 14 chr3 93039555 93039990 -134484588 + LTR27-int LTR ERV1 1 434 -6657 3068 302 57 38 chr3 93040325 93041691 -134482887 + LTR27-int LTR ERV1 1458 2849 -6070 812 218 52 116 chr3 93041841 93042374 -134482204 - LTR28 LTR ERV1 -148 893 1 8685 192 3 11 chr3 93042390 93043919 -134480659 + LTR27-int LTR ERV1 2862 4377 -2714 3163 160 35 0 chr3 93043937 93044486 -134480092 - HSMAR2 DNA Mariner -721 581 14 2190 243 42 57 chr3 93044495 93045355 -134479223 + L1M4 LINE L1 2230 3070 -3076 1541 223 0 0 chr3 93045355 93045651 -134478927 + AluJb SINE Alu 1 296 -16 2190 243 42 57 chr3 93045651 93045928 -134478650 + L1M4 LINE L1 3070 3350 -2796 928 272 92 38 chr3 93046129 93046236 -134478342 + L1M4 LINE L1 3284 3384 -2762 1094 246 60 26 chr3 93046236 93046585 -134477993 + MLT1A1 LTR MaLR 5 365 0 928 272 92 38 chr3 93046585 93047032 -134477546 + L1M4 LINE L1 3384 3868 -2278 1150 267 42 50 chr3 93047145 93047688 -134476890 + L1M4 LINE L1 3859 4397 -1749 301 159 14 14 chr3 93048175 93048244 -134476334 + (TA)n Simple_repeat Simple_repeat 2 70 0 1601 307 82 34 chr3 93049359 93050680 -134473898 - L1MC4a LINE L1 -370 7438 6054 186 311 0 16 chr3 93051356 93051417 -134473161 + MER5A DNA MER1_type 4 63 -126 408 279 133 6 chr3 93051537 93051695 -134472883 - MLT1J LTR MaLR -279 232 55 2245 113 0 6 chr3 93051715 93052026 -134472552 + AluSc SINE Alu 1 309 0 1371 225 23 48 chr3 93052085 93052211 -134472367 - MLT1A2 LTR MaLR -32 342 214 5654 156 93 13 chr3 93052211 93053351 -134471227 + Tigger3b DNA MER2_type 1 1231 0 1371 225 23 48 chr3 93053351 93053506 -134471072 - MLT1A2 LTR MaLR -160 214 57 2151 131 73 14 chr3 93053506 93053850 -134470728 + THE1B LTR MaLR 1 364 0 11319 88 28 1 chr3 93053850 93055389 -134469189 + THE1B-int LTR MaLR 1 1580 0 2049 137 73 14 chr3 93055389 93055733 -134468845 + THE1B LTR MaLR 1 364 0 1371 225 23 48 chr3 93055733 93055799 -134468779 - MLT1A2 LTR MaLR -314 60 1 474 341 97 68 chr3 93055873 93056754 -134467824 + L2 LINE L2 2376 3272 0 517 281 171 45 chr3 93058233 93058567 -134466011 - L2 LINE L2 0 3313 2938 1938 162 24 30 chr3 93058575 93058694 -134465884 - Tigger1 DNA MER2_type -1957 461 343 252 0 0 0 chr3 93058694 93058722 -134465856 + (GA)n Simple_repeat Simple_repeat 1 28 0 1938 162 24 30 chr3 93058722 93058973 -134465605 - Tigger1 DNA MER2_type -2075 343 93 4579 186 37 10 chr3 93061388 93061536 -134463042 - ERVL LTR ERVL -3927 1837 1694 1663 218 19 11 chr3 93061536 93061898 -134462680 + MLT1A1 LTR MaLR 1 365 0 4579 186 37 10 chr3 93061898 93062620 -134461958 - ERVL LTR ERVL -4070 1694 944 602 293 42 14 chr3 93063781 93063993 -134460585 + MLT1I LTR MaLR 1 218 -191 216 0 0 0 chr3 93064895 93064919 -134459659 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1757 323 162 24 chr3 93065311 93066692 -134457886 + L2 LINE L2 1110 2681 -633 233 311 172 38 chr3 93066763 93067130 -134457448 + L2 LINE L2 2843 3258 -55 23 68 0 0 chr3 93067646 93067690 -134456888 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr3 93068116 93068138 -134456440 + AT_rich Low_complexity Low_complexity 1 22 0 261 257 27 0 chr3 93068973 93069047 -134455531 + L1ME LINE L1 5521 5596 -525 21 0 0 0 chr3 93069868 93069889 -134454689 + AT_rich Low_complexity Low_complexity 1 21 0 1480 215 90 16 chr3 93069935 93070303 -134454275 - MSTD LTR MaLR -1 395 1 22 70 0 0 chr3 93070315 93070358 -134454220 + AT_rich Low_complexity Low_complexity 1 43 0 273 156 0 0 chr3 93070590 93070635 -134453943 + MER58 DNA MER1_type 61 105 -236 510 190 60 0 chr3 93070735 93070851 -134453727 + MER58 DNA MER1_type 138 260 -81 2197 149 22 0 chr3 93071569 93071924 -134452654 - THE1B LTR MaLR -1 363 1 1778 156 10 3 chr3 93072766 93073061 -134451517 + AluSg SINE Alu 1 297 -13 700 58 0 39 chr3 93074087 93074190 -134450388 - L1P LINE L1 -979 5167 5069 * 3735 23 2 0 chr3 93074176 93074612 -134449966 + L1PA4 LINE L1 5684 6120 -35 27 0 0 0 chr3 93074863 93074890 -134449688 + AT_rich Low_complexity Low_complexity 1 27 0 4283 181 11 30 chr3 93074894 93075770 -134448808 - L1MA4 LINE L1 -10 6290 5431 405 0 0 0 chr3 93076043 93076088 -134448490 + (TG)n Simple_repeat Simple_repeat 2 46 0 505 281 79 83 chr3 93076279 93076963 -134447615 + HAL1 LINE L1 1732 2412 -95 1284 174 4 25 chr3 93077081 93077322 -134447256 - AluSx SINE Alu -13 299 64 21 0 0 0 chr3 93079151 93079172 -134445406 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr3 93079223 93079271 -134445307 + AT_rich Low_complexity Low_complexity 1 48 0 1850 94 43 4 chr3 93079818 93080073 -134444505 - AluSx SINE Alu -17 295 31 214 237 53 26 chr3 93080110 93080186 -134444392 - MIR SINE MIR -2 260 183 207 0 0 0 chr3 93080377 93080400 -134444178 + (CAA)n Simple_repeat Simple_repeat 2 24 0 1340 113 32 44 chr3 93080460 93080708 -134443870 + L1MA1 LINE L1 6055 6299 -3 180 213 0 0 chr3 93082405 93082466 -134442112 + CT-rich Low_complexity Low_complexity 2 62 0 322 342 32 13 chr3 93082581 93082736 -134441842 - MLT1K LTR MaLR -324 264 107 1914 156 44 19 chr3 93082744 93083110 -134441468 + THE1C LTR MaLR 1 375 0 519 230 198 32 chr3 93083275 93083492 -134441086 - LTR50 LTR ERVL -1 794 542 4687 161 33 25 chr3 93083492 93083901 -134440677 + L1MA8 LINE L1 5372 5776 -515 216 0 0 0 chr3 93083901 93083925 -134440653 + (CA)n Simple_repeat Simple_repeat 1 24 0 4687 161 33 25 chr3 93083925 93084426 -134440152 + L1MA8 LINE L1 5776 6289 -2 805 196 76 5 chr3 93084644 93084828 -134439750 - LTR50 LTR ERVL -598 197 1 6015 24 4 0 chr3 93086738 93087443 -134437135 + L1PA3 LINE L1 5448 6155 0 680 283 66 18 chr3 93089776 93090002 -134434576 + MIR SINE MIR 2 238 -24 181 208 189 19 chr3 93089969 93090022 -134434556 + L2 LINE L2 3251 3312 -1 * 1652 145 39 75 chr3 93090073 93090460 -134434118 + THE1C LTR MaLR 1 373 -2 1966 127 3 0 chr3 93091990 93092297 -134432281 + AluSx SINE Alu 1 308 0 198 0 0 0 chr3 93092691 93092713 -134431865 + (CA)n Simple_repeat Simple_repeat 2 23 0 994 165 148 74 chr3 93092773 93093172 -134431406 - MLT2B1 LTR ERVL -41 479 1 1188 188 96 53 chr3 93094071 93094448 -134430130 - MSTD LTR MaLR 0 396 4 22 0 0 0 chr3 93095035 93095057 -134429521 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr3 93095183 93095218 -134429360 + AT_rich Low_complexity Low_complexity 1 35 0 674 493 42 12 chr3 93096442 93096872 -134427706 + MER69 DNA AcHobo 4 446 -2080 488 288 12 25 chr3 93096950 93097113 -134427465 - MLT1E LTR MaLR -432 161 1 251 281 52 21 chr3 93097342 93097438 -134427140 - MLT1K LTR MaLR -351 237 139 553 137 0 89 chr3 93097482 93097606 -134426972 + AluJb SINE Alu 200 312 0 856 237 100 55 chr3 93097679 93098008 -134426570 + MER2 DNA MER2_type 1 344 -1 229 368 26 0 chr3 93098175 93098251 -134426327 + L2 LINE L2 3182 3259 -13 6592 21 0 0 chr3 93098811 93099569 -134425009 - L1PA3 LINE L1 -5 6150 5393 248 294 206 0 chr3 93099676 93099812 -134424766 + MIR3 SINE MIR 44 207 -1 315 167 0 0 chr3 93099984 93100050 -134424528 + (TG)n Simple_repeat Simple_repeat 1 66 0 1977 150 39 28 chr3 93102302 93102662 -134421916 - THE1B LTR MaLR 0 364 1 510 241 28 35 chr3 93102902 93103047 -134421531 - MLT1A2 LTR MaLR -145 229 86 25 65 0 0 chr3 93103960 93104006 -134420572 + AT_rich Low_complexity Low_complexity 1 46 0 431 192 154 10 chr3 93107170 93107274 -134417304 + L2 LINE L2 3192 3310 -3 336 339 129 6 chr3 93107491 93107662 -134416916 - MIR SINE MIR -20 242 51 725 154 67 2 chr3 93108374 93108510 -134416068 - MER20 DNA MER1_type 0 219 73 531 277 104 73 chr3 93108702 93109056 -134415522 - MLT1J2 LTR MaLR -65 385 21 463 270 54 27 chr3 93109140 93109325 -134415253 + L1ME3A LINE L1 5723 5912 -266 34 24 0 0 chr3 93111958 93111999 -134412579 + AT_rich Low_complexity Low_complexity 1 41 0 534 287 53 8 chr3 93112282 93112547 -134412031 - L1ME3A LINE L1 -219 5951 5675 344 325 53 21 chr3 93113450 93113638 -134410940 + L1ME3A LINE L1 1925 2118 -4278 813 268 78 38 chr3 93113650 93114071 -134410507 + L1ME3A LINE L1 4065 4502 -1713 1084 169 0 6 chr3 93114088 93114271 -134410307 + AluJb SINE Alu 122 303 -9 2100 89 39 0 chr3 93114273 93114555 -134410023 + AluSx SINE Alu 1 293 -19 306 0 0 0 chr3 93114560 93114594 -134409984 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 1103 264 78 38 chr3 93114652 93115077 -134409501 + L1ME3A LINE L1 5694 6135 -104 492 305 144 0 chr3 93115119 93115286 -134409292 + MLT1H LTR MaLR 31 221 -328 812 135 0 21 chr3 93115300 93115441 -134409137 - L1MA2 LINE L1 0 6304 6167 657 137 29 0 chr3 93115444 93115546 -134409032 - U6 snRNA snRNA -2 105 1 894 183 114 117 chr3 93115660 93116054 -134408524 - MSTD LTR MaLR 0 396 4 385 308 80 65 chr3 93116162 93116513 -134408065 - MLT1H LTR MaLR -182 367 12 595 246 129 52 chr3 93117506 93117969 -134406609 + MLT1G LTR MaLR 6 590 0 180 135 0 0 chr3 93118335 93118372 -134406206 + (TG)n Simple_repeat Simple_repeat 2 38 0 351 113 0 0 chr3 93118467 93118520 -134406058 + (CA)n Simple_repeat Simple_repeat 2 54 0 180 0 0 0 chr3 93119145 93119165 -134405413 + (CAA)n Simple_repeat Simple_repeat 2 21 0 603 305 112 13 chr3 93119928 93120161 -134404417 - MIR SINE MIR -5 257 2 27 0 0 0 chr3 93121411 93121438 -134403140 + AT_rich Low_complexity Low_complexity 1 27 0 22 80 0 0 chr3 93121529 93121579 -134402999 + AT_rich Low_complexity Low_complexity 1 50 0 203 179 0 0 chr3 93122710 93122749 -134401829 + (CATA)n Simple_repeat Simple_repeat 2 40 0 2076 165 64 25 chr3 93123493 93123996 -134400582 + MLT2A2 LTR ERVL 1 554 0 6545 190 38 21 chr3 93124548 93126994 -134397584 - L1PA16 LINE L1 -9 7595 5108 4666 244 24 26 chr3 93127006 93128945 -134395633 - L1PA16 LINE L1 -3457 4127 2182 286 279 0 0 chr3 93129133 93129201 -134395377 - L1PA16 LINE L1 -5331 2250 2183 317 264 54 62 chr3 93129446 93129575 -134395003 - L1PA16 LINE L1 -5400 2181 2054 962 348 30 30 chr3 93129661 93130271 -134394307 - L1PA16 LINE L1 -6177 1397 788 2287 207 19 4 chr3 93130279 93130800 -134393778 - L1 LINE L1 -1490 4656 4128 181 218 55 0 chr3 93130805 93130860 -134393718 + L2 LINE L2 3162 3219 -94 234 222 56 0 chr3 93131585 93131639 -134392939 + MLT1L LTR MaLR 11 67 -548 1008 389 12 63 chr3 93131772 93132199 -134392379 - MER68 LTR ERV1 0 562 158 360 77 0 0 chr3 93132502 93132554 -134392024 + (TG)n Simple_repeat Simple_repeat 1 52 0 195 100 0 0 chr3 93132563 93132593 -134391985 + (GA)n Simple_repeat Simple_repeat 2 31 0 210 86 0 57 chr3 93133010 93133045 -134391533 + (TTCTC)n Simple_repeat Simple_repeat 3 35 0 27 0 0 0 chr3 93133388 93133415 -134391163 + AT_rich Low_complexity Low_complexity 1 27 0 207 0 0 0 chr3 93133827 93133850 -134390728 + (CAA)n Simple_repeat Simple_repeat 2 24 0 195 220 40 0 chr3 93133912 93133962 -134390616 + L2 LINE L2 3220 3271 -1 196 317 0 0 chr3 93135530 93135590 -134388988 + L2 LINE L2 3236 3295 -18 238 310 132 25 chr3 93135783 93135980 -134388598 + L2 LINE L2 554 771 -2543 398 273 8 16 chr3 93136334 93136455 -134388123 - L2 LINE L2 -1 3312 3193 713 156 0 25 chr3 93136670 93136792 -134387786 + AluJo SINE Alu 17 135 -177 240 333 22 44 chr3 93139294 93139384 -134385194 - MIR SINE MIR -167 95 8 1934 141 0 3 chr3 93140970 93141260 -134383318 - AluSg SINE Alu -19 291 3 359 248 92 0 chr3 93143966 93144075 -134380503 + MIR SINE MIR 76 194 -68 255 189 0 0 chr3 93145135 93145188 -134379390 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 1318 259 8 3 chr3 93146934 93147289 -134377289 - L1ME LINE L1 -540 5693 5337 2506 272 37 29 chr3 93147299 93147402 -134377176 - L1ME LINE L1 -1627 4588 4487 2637 157 25 31 chr3 93147402 93147919 -134376659 - L1PA16 LINE L1 -16 6150 5637 2506 272 37 29 chr3 93147919 93148824 -134375754 - L1ME LINE L1 -1728 4487 3572 369 0 0 0 chr3 93148840 93148881 -134375697 + (TG)n Simple_repeat Simple_repeat 2 42 0 1014 286 72 35 chr3 93148933 93149620 -134374958 - L1ME LINE L1 -4241 1975 1416 317 260 60 0 chr3 93149680 93149780 -134374798 - L1ME LINE L1 -5898 307 202 279 0 0 0 chr3 93150473 93150504 -134374074 + (CA)n Simple_repeat Simple_repeat 2 32 0 31 26 0 0 chr3 93151657 93151695 -134372883 + AT_rich Low_complexity Low_complexity 1 38 0 959 198 48 87 chr3 93151965 93152385 -134372193 + MLT1A1 LTR MaLR 1 362 -3 2355 124 8 27 chr3 93152573 93152944 -134371634 + THE1B LTR MaLR 1 364 0 29 47 0 0 chr3 93154275 93154318 -134370260 + AT_rich Low_complexity Low_complexity 1 43 0 342 0 0 0 chr3 93154682 93154720 -134369858 + (CA)n Simple_repeat Simple_repeat 1 38 0 705 326 45 16 chr3 93155178 93155665 -134368913 + HAL1 LINE L1 1250 1750 -757 25 65 0 0 chr3 93156668 93156714 -134367864 + AT_rich Low_complexity Low_complexity 1 46 0 1177 282 35 8 chr3 93157297 93157807 -134366771 + L1M4 LINE L1 2235 2758 -3388 24 32 0 0 chr3 93158536 93158567 -134366011 + AT_rich Low_complexity Low_complexity 1 31 0 469 289 91 24 chr3 93159121 93159408 -134365170 - MLT1K LTR MaLR -11 577 272 446 320 26 9 chr3 93160604 93160835 -134363743 + L1ME2 LINE L1 5593 5827 -294 253 296 65 9 chr3 93160838 93160946 -134363632 + MLT1L LTR MaLR 418 531 -84 209 263 40 0 chr3 93161087 93161163 -134363415 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 6802 62 6 2 chr3 93161400 93162964 -134361614 + L1PA7 LINE L1 4571 6152 -2 643 206 100 78 chr3 93162957 93163259 -134361319 + L1ME1 LINE L1 5652 5949 -217 532 292 32 36 chr3 93163293 93163543 -134361035 + L1ME2 LINE L1 5901 6149 -15 21 0 0 0 chr3 93165106 93165127 -134359451 + AT_rich Low_complexity Low_complexity 1 21 0 313 255 20 0 chr3 93165808 93165906 -134358672 + (TA)n Simple_repeat Simple_repeat 1 100 0 27 49 0 0 chr3 93166254 93166295 -134358283 + AT_rich Low_complexity Low_complexity 1 41 0 1551 196 57 20 chr3 93166360 93166541 -134358037 - MLT1A1 LTR MaLR 0 365 192 7296 43 3 0 chr3 93166541 93167569 -134357009 + L1PA5 LINE L1 5122 6152 -2 1551 196 57 20 chr3 93167569 93167739 -134356839 - MLT1A1 LTR MaLR -173 192 1 597 272 83 43 chr3 93167943 93168317 -134356261 - L1ME3A LINE L1 -331 5839 5521 2067 121 21 0 chr3 93168345 93168635 -134355943 - AluSx SINE Alu -14 298 3 21 57 0 0 chr3 93169559 93169594 -134354984 + AT_rich Low_complexity Low_complexity 1 35 0 481 272 82 49 chr3 93169912 93170284 -134354294 + L1MD3 LINE L1 5566 5924 -1884 2702 98 16 0 chr3 93170284 93170653 -134353925 + THE1C LTR MaLR 1 375 0 481 272 82 49 chr3 93170653 93171195 -134353383 + L1MD3 LINE L1 5924 6396 -1412 1422 209 7 10 chr3 93171195 93171492 -134353086 + AluJo SINE Alu 1 296 -6 481 272 82 49 chr3 93171492 93171697 -134352881 + L1MD3 LINE L1 6396 6593 -1215 326 241 86 68 chr3 93171703 93171865 -134352713 - MLT1D LTR MaLR -277 228 64 1244 228 80 12 chr3 93171877 93172268 -134352310 + MLT2B1 LTR ERVL 1 457 -63 192 40 0 0 chr3 93172289 93172314 -134352264 + (TG)n Simple_repeat Simple_repeat 2 26 0 789 238 34 50 chr3 93172419 93172776 -134351802 + L1MC4a LINE L1 6961 7311 -497 * 1023 78 7 7 chr3 93172756 93172910 -134351668 + L1P LINE L1 4358 4511 -1635 273 265 135 9 chr3 93173038 93173152 -134351426 - MLT1J2 LTR MaLR -228 218 82 230 284 0 14 chr3 93176008 93176082 -134348496 - MIR SINE MIR -187 75 3 2036 115 0 35 chr3 93176796 93177110 -134347468 - AluSx SINE Alu -9 303 1 180 77 0 0 chr3 93177871 93177897 -134346681 + (T)n Simple_repeat Simple_repeat 1 26 0 28 29 0 0 chr3 93178469 93178504 -134346074 + AT_rich Low_complexity Low_complexity 1 35 0 25 83 0 0 chr3 93178575 93178635 -134345943 + AT_rich Low_complexity Low_complexity 1 60 0 1584 235 56 44 chr3 93179992 93180489 -134344089 - MLT1D LTR MaLR -2 503 1 303 281 240 0 chr3 93181652 93181773 -134342805 - MER5A DNA MER1_type 0 189 40 2249 223 45 5 chr3 93183162 93183271 -134341307 - MER70A LTR ERVL -6 466 363 207 0 0 0 chr3 93183271 93183294 -134341284 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2249 223 45 5 chr3 93183294 93183632 -134340946 - MER70A LTR ERVL -109 363 1 2521 133 8 0 chr3 93183703 93184064 -134340514 - THE1B LTR MaLR 0 364 1 243 232 71 0 chr3 93184064 93184120 -134340458 + MIR SINE MIR 59 118 -144 1249 247 123 42 chr3 93185284 93185676 -134338902 - L1ME2 LINE L1 -9 6155 5709 378 0 0 0 chr3 93185676 93185718 -134338860 + (TTTTG)n Simple_repeat Simple_repeat 1 42 0 1249 247 123 42 chr3 93185718 93185844 -134338734 - L1ME2 LINE L1 -455 5709 5595 4622 255 72 40 chr3 93185849 93188051 -134336527 - L1ME2 LINE L1 -646 5518 3193 803 287 52 12 chr3 93188055 93188379 -134336199 - L1ME3 LINE L1 -1 6161 5825 315 293 88 35 chr3 93188634 93188778 -134335800 + MIR SINE MIR 16 167 -62 784 161 15 0 chr3 93189346 93189476 -134335102 + THE1C LTR MaLR 244 375 0 413 279 70 6 chr3 93189656 93189814 -134334764 + L1M4 LINE L1 4485 4652 -1494 33 56 0 0 chr3 93189828 93189882 -134334696 + AT_rich Low_complexity Low_complexity 1 54 0 1962 123 66 41 chr3 93191215 93191581 -134332997 - THE1C LTR MaLR 0 375 1 956 102 0 0 chr3 93191581 93191718 -134332860 - THE1C-int LTR MaLR 0 1580 1444 9689 114 36 32 chr3 93191719 93193256 -134331322 - THE1C-int LTR MaLR -38 1542 1 1929 134 66 38 chr3 93193256 93193621 -134330957 - THE1C LTR MaLR 0 375 1 35 41 0 0 chr3 93193743 93193792 -134330786 + AT_rich Low_complexity Low_complexity 1 49 0 5401 120 14 3 chr3 93193792 93194040 -134330538 - L1MA1 LINE L1 -7 7714 7470 222 37 0 0 chr3 93194040 93194067 -134330511 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5401 120 14 3 chr3 93194067 93194677 -134329901 - L1MA1 LINE L1 -251 7470 6847 22174 29 5 0 chr3 93194688 93198134 -134326444 - L1PA3 LINE L1 -1 6154 2697 14524 166 29 13 chr3 93198135 93202861 -134321717 - L1MA1 LINE L1 -743 6822 2042 6581 116 13 21 chr3 93202862 93203868 -134320710 + MER4B-int LTR ERV1 5189 6186 -572 514 58 0 92 chr3 93203889 93203976 -134320602 + MER4B-int LTR ERV1 6528 6606 -152 207 319 187 0 chr3 93204083 93204174 -134320404 - L2 LINE L2 -2 3270 3163 376 297 53 84 chr3 93204395 93204752 -134319826 - L2 LINE L2 -346 2968 2623 253 267 23 52 chr3 93205305 93205477 -134319101 + L1MEd LINE L1 12 178 -5941 3653 123 22 7 chr3 93206683 93207238 -134317340 + Tigger3b DNA MER2_type 1 563 -668 46 19 0 0 chr3 93207877 93207930 -134316648 + AT_rich Low_complexity Low_complexity 1 53 0 24 53 0 0 chr3 93208146 93208184 -134316394 + AT_rich Low_complexity Low_complexity 1 38 0 453 316 13 20 chr3 93208375 93208527 -134316051 - MIR SINE MIR -109 153 3 838 140 119 0 chr3 93208965 93209108 -134315470 - Tigger1 DNA MER2_type -2 2416 2257 17666 169 16 18 chr3 93209116 93212173 -134312405 - L1P3 LINE L1 -2096 4365 1314 189 0 0 0 chr3 93212173 93212194 -134312384 + (TTG)n Simple_repeat Simple_repeat 1 21 0 17666 169 16 18 chr3 93212194 93212522 -134312056 - L1P3 LINE L1 -5147 1314 987 5206 121 5 17 chr3 93212532 93213344 -134311234 - L1P3 LINE L1 -5071 804 3 7979 154 57 14 chr3 93213348 93214815 -134309763 - Tigger1 DNA MER2_type -859 1559 30 28 61 0 0 chr3 93215921 93215970 -134308608 + AT_rich Low_complexity Low_complexity 1 49 0 408 240 0 0 chr3 93218066 93218187 -134306391 + (TA)n Simple_repeat Simple_repeat 1 121 0 330 352 143 37 chr3 93218191 93218569 -134306009 - L2 LINE L2 -35 3278 2861 427 305 160 62 chr3 93218671 93219045 -134305533 - L2 LINE L2 -610 2704 2294 2054 106 50 0 chr3 93219490 93219650 -134304928 - AluSp SINE Alu -16 297 116 185 59 59 0 chr3 93219650 93219684 -134304894 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2054 106 50 0 chr3 93219684 93219806 -134304772 - AluSp SINE Alu -197 116 1 1819 109 0 12 chr3 93220536 93220793 -134303785 - AluY SINE Alu -14 297 44 350 332 109 9 chr3 93220812 93221082 -134303496 + L2 LINE L2 2771 3063 -250 2093 108 63 26 chr3 93221152 93221503 -134303075 + THE1B LTR MaLR 1 364 0 243 297 99 0 chr3 93221957 93222048 -134302530 - MIR SINE MIR -96 166 67 313 358 205 29 chr3 93224938 93225620 -134298958 - L3 LINE CR1 -3 1574 773 3923 52 6 2 chr3 93225671 93226170 -134298408 + L1PA4 LINE L1 5654 6154 -1 1454 283 78 31 chr3 93226767 93227505 -134297073 - L2 LINE L2 -15 3298 2521 1030 247 140 89 chr3 93228139 93228653 -134295925 + MLT1F1 LTR MaLR 3 567 0 351 340 0 0 chr3 93229626 93229726 -134294852 + MIR SINE MIR 53 152 -110 27 0 0 0 chr3 93231561 93231588 -134292990 + AT_rich Low_complexity Low_complexity 1 27 0 1891 156 3 0 chr3 93231614 93231902 -134292676 - AluSx SINE Alu -23 289 1 219 233 8 67 chr3 93231916 93232036 -134292542 + A-rich Low_complexity Low_complexity 3 115 0 656 318 70 35 chr3 93232770 93233028 -134291550 + MER115 DNA AcHobo 35 301 -392 234 0 0 0 chr3 93233959 93233985 -134290593 + (A)n Simple_repeat Simple_repeat 1 26 0 318 26 0 0 chr3 93234195 93234234 -134290344 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr3 93234470 93234492 -134290086 + AT_rich Low_complexity Low_complexity 1 22 0 243 0 0 0 chr3 93234525 93234552 -134290026 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2172 112 7 0 chr3 93234632 93234927 -134289651 + AluSq SINE Alu 3 299 -14 919 226 9 49 chr3 93235726 93235952 -134288626 + MER20 DNA MER1_type 3 219 0 22 0 0 0 chr3 93237066 93237088 -134287490 + AT_rich Low_complexity Low_complexity 1 22 0 463 242 72 42 chr3 93237301 93237607 -134286971 + pTR5 LTR ERV1 741 1055 -1383 1349 94 196 0 chr3 93237663 93237898 -134286680 + LTR12 LTR ERV1 1 281 -433 233 284 37 12 chr3 93238485 93238566 -134286012 + L2 LINE L2 2211 2293 -1021 954 257 64 61 chr3 93238754 93239289 -134285289 + MER39 LTR ERV1 1 707 0 183 355 21 71 chr3 93239774 93239915 -134284663 + L2 LINE L2 3137 3270 -2 290 333 124 0 chr3 93240850 93240955 -134283623 + L2 LINE L2 3146 3263 -9 1209 230 81 67 chr3 93241033 93241529 -134283049 + MLT1D LTR MaLR 3 505 0 190 313 16 0 chr3 93243170 93243234 -134281344 + L2 LINE L2 3249 3313 0 195 398 0 0 chr3 93244800 93244898 -134279680 + L2 LINE L2 2958 3055 -217 1746 195 0 0 chr3 93246822 93247114 -134277464 + AluJb SINE Alu 1 292 -20 237 114 29 0 chr3 93247278 93247313 -134277265 - Alu SINE Alu -264 38 3 2084 126 0 7 chr3 93248155 93248456 -134276122 + AluSx SINE Alu 1 299 -13 369 94 0 0 chr3 93250417 93250470 -134274108 + MADE1 DNA Mariner 28 80 0 844 316 186 33 chr3 93251890 93252579 -134271999 - L2 LINE L2 -828 2486 1693 279 0 0 0 chr3 93254696 93254734 -134269844 - L1PA3 LINE L1 -3 6152 6115 * 841 102 16 1 chr3 93254725 93254858 -134269720 + L1PA4 LINE L1 5981 6131 -37 185 214 36 0 chr3 93254860 93254916 -134269662 + (CATATA)n Simple_repeat Simple_repeat 5 62 0 632 313 103 31 chr3 93256914 93257205 -134267373 - MLT1J LTR MaLR -197 314 3 1169 299 103 33 chr3 93257521 93258051 -134266527 + MLT1G1 LTR MaLR 21 539 -3 289 355 19 0 chr3 93258329 93258436 -134266142 + MER5B DNA MER1_type 1 109 -69 574 169 12 127 chr3 93258556 93258722 -134265856 - BC200 scRNA scRNA -45 155 9 658 206 175 21 chr3 93259265 93259459 -134265119 + MER58A DNA MER1_type 1 224 0 30 69 0 0 chr3 93259482 93259540 -134265038 + AT_rich Low_complexity Low_complexity 1 58 0 1794 241 65 39 chr3 93259867 93260410 -134264168 + MLT1F1 LTR MaLR 9 565 -2 24 32 0 0 chr3 93261193 93261224 -134263354 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr3 93261374 93261410 -134263168 + AT_rich Low_complexity Low_complexity 1 36 0 203 352 95 9 chr3 93261680 93261785 -134262793 - L2 LINE L2 -9 3263 3150 1532 169 3 69 chr3 93262708 93263056 -134261522 - MER4A LTR ERV1 0 664 340 558 105 53 21 chr3 93263071 93263166 -134261412 - MER4A LTR ERV1 -566 98 1 2622 99 3 0 chr3 93263653 93264007 -134260571 + THE1A LTR MaLR 1 355 0 2130 124 7 7 chr3 93264698 93265004 -134259574 + AluSx SINE Alu 1 306 -6 1622 162 50 11 chr3 93268074 93268352 -134256226 - AluJo SINE Alu -21 291 3 220 328 0 0 chr3 93268354 93268418 -134256160 - MIR SINE MIR -55 153 90 196 349 92 9 chr3 93269082 93269311 -134255267 + L2 LINE L2 3005 3252 -61 23 0 0 0 chr3 93270420 93270443 -134254135 + AT_rich Low_complexity Low_complexity 1 23 0 326 253 107 33 chr3 93270696 93270848 -134253730 + MIR SINE MIR 33 192 -62 207 379 0 29 chr3 93272376 93272516 -134252062 + L2 LINE L2 2622 2757 -557 2133 163 41 0 chr3 93272535 93272898 -134251680 + MSTA LTR MaLR 51 428 0 204 376 20 10 chr3 93272951 93273052 -134251526 + L2 LINE L2 3153 3254 -18 1016 224 44 179 chr3 93273246 93273597 -134250981 - LTR40a LTR ERVL -2 517 181 577 92 0 0 chr3 93273597 93273684 -134250894 + Alu SINE Alu 222 308 -1 1016 224 44 179 chr3 93273684 93273843 -134250735 - LTR40a LTR ERVL -338 181 2 613 244 75 0 chr3 93273965 93274125 -134250453 + MER69A DNA AcHobo 2 173 -4 22 35 0 0 chr3 93275018 93275047 -134249531 + AT_rich Low_complexity Low_complexity 1 29 0 2540 201 129 33 chr3 93275173 93275298 -134249280 + L1MC3 LINE L1 6711 6823 -962 504 32 0 0 chr3 93275298 93275360 -134249218 + (CA)n Simple_repeat Simple_repeat 2 63 0 3936 116 40 13 chr3 93275369 93275996 -134248582 - LTR9B LTR ERV1 0 644 1 2540 201 129 33 chr3 93275996 93276556 -134248022 + L1MC3 LINE L1 6830 7473 -312 1188 125 0 12 chr3 93276561 93276729 -134247849 + AluSq SINE Alu 4 169 -144 994 223 70 13 chr3 93277296 93277585 -134246993 + L1ME3A LINE L1 5409 5724 -446 568 184 80 90 chr3 93277743 93277955 -134246623 + L1ME3A LINE L1 5770 5979 -191 273 280 9 37 chr3 93277976 93278083 -134246495 + L1ME3A LINE L1 6059 6162 -8 459 0 0 0 chr3 93279898 93279949 -134244629 + (TG)n Simple_repeat Simple_repeat 2 52 0 343 338 71 31 chr3 93279951 93280340 -134244238 + L2 LINE L2 2503 2969 -344 974 269 67 60 chr3 93280482 93281020 -134243558 + MER34 LTR ERV1 1 542 0 2756 76 3 0 chr3 93281110 93281464 -134243114 - THE1A LTR MaLR 0 355 1 327 85 0 0 chr3 93281876 93281923 -134242655 + (TG)n Simple_repeat Simple_repeat 2 48 0 1544 209 47 19 chr3 93281949 93282312 -134242266 - MLT1B LTR MaLR -8 382 10 1169 169 22 40 chr3 93332465 93332561 -134192017 - MLT2B2 LTR ERVL -294 221 125 2095 119 37 42 chr3 93332561 93332938 -134191640 - THE1C LTR MaLR 0 375 1 1169 169 22 40 chr3 93332938 93333066 -134191512 - MLT2B2 LTR ERVL -390 125 1 1122 235 60 8 chr3 93333159 93333410 -134191168 + Tigger7 DNA MER2_type 1 264 -469 285 197 211 13 chr3 93333428 93333504 -134191074 - Tigger3b DNA MER2_type 0 1232 1142 * 4997 130 103 17 chr3 93333502 93333929 -134190649 - Tigger3b DNA MER2_type -2012 1016 627 180 0 0 0 chr3 93333929 93333949 -134190629 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4997 130 103 17 chr3 93333949 93334457 -134190121 - Tigger3b DNA MER2_type -2401 627 1 435 226 0 12 chr3 93334457 93334540 -134190038 + Tigger7 DNA MER2_type 2401 2482 -5 720 286 54 0 chr3 93334552 93334755 -134189823 - MIR SINE MIR -30 232 19 5293 143 30 29 chr3 93334930 93336071 -134188507 - L1 LINE L1 -3393 4172 3025 1611 168 0 37 chr3 93336071 93336339 -134188239 - AluSx SINE Alu -52 260 3 5293 143 30 29 chr3 93336339 93336625 -134187953 - L1 LINE L1 -4540 3025 2741 1381 228 165 59 chr3 93336628 93337339 -134187239 - L1 LINE L1 -6235 1254 469 1193 228 42 62 chr3 93337747 93338180 -134186398 + MER39 LTR ERV1 67 687 -20 225 256 221 68 chr3 93338257 93338611 -134185967 - MLT1K LTR MaLR -2 586 177 341 54 0 70 chr3 93338611 93338651 -134185927 - MLT2A1 LTR ERVL 0 444 417 822 71 53 0 chr3 93338651 93338821 -134185757 + (TA)n Simple_repeat Simple_repeat 1 179 0 341 54 0 70 chr3 93338821 93338847 -134185731 - MLT2A1 LTR ERVL -27 417 391 232 0 0 0 chr3 93338894 93338928 -134185650 - MLT2A1 LTR ERVL -44 400 367 764 258 69 80 chr3 93340391 93340868 -134183710 - MLT1H LTR MaLR -3 546 75 35 0 0 0 chr3 93341561 93341596 -134182982 + AT_rich Low_complexity Low_complexity 1 35 0 214 148 37 0 chr3 93342072 93342126 -134182452 + (TG)n Simple_repeat Simple_repeat 2 57 0 21 36 0 0 chr3 93342200 93342228 -134182350 + AT_rich Low_complexity Low_complexity 1 28 0 1974 147 82 15 chr3 93342289 93342630 -134181948 + THE1B LTR MaLR 1 364 0 11039 101 24 0 chr3 93342632 93344173 -134180405 + THE1A-int LTR MaLR 3 1580 0 1974 145 8 41 chr3 93344173 93344538 -134180040 + THE1A LTR MaLR 1 353 -2 1173 245 31 93 chr3 93344622 93344966 -134179612 + MLT1D LTR MaLR 25 332 -173 1735 160 166 11 chr3 93344966 93345334 -134179244 - MSTA LTR MaLR -3 425 1 1173 245 31 93 chr3 93345334 93345475 -134179103 + MLT1D LTR MaLR 332 480 -25 251 271 0 0 chr3 93346344 93346403 -134178175 + MLT1L LTR MaLR 557 615 0 423 0 0 0 chr3 93346820 93346867 -134177711 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1839 178 92 62 chr3 93346871 93347485 -134177093 - MER39 LTR ERV1 -32 675 1 1610 89 0 0 chr3 93347553 93347766 -134176812 - L1PA8 LINE L1 -13 6159 5947 1502 170 93 0 chr3 93347818 93348088 -134176490 - AluSx SINE Alu -14 298 4 184 286 32 32 chr3 93349180 93349243 -134175335 + L2 LINE L2 2658 2720 -594 2244 117 3 0 chr3 93349930 93350237 -134174341 - AluSx SINE Alu -4 308 1 495 0 0 0 chr3 93351406 93351461 -134173117 + (CA)n Simple_repeat Simple_repeat 2 56 0 2538 61 3 0 chr3 93352664 93352974 -134171604 + AluY SINE Alu 1 311 0 975 219 115 11 chr3 93353900 93354334 -134170244 - L1ME2 LINE L1 -10 6154 5522 324 315 33 44 chr3 93354477 93354658 -134169920 + MER97c DNA MER1_type? 1 179 -911 1344 231 58 29 chr3 93355513 93355890 -134168688 - MLT1D LTR MaLR -117 388 1 234 234 47 0 chr3 93355978 93356042 -134168536 - MLT1L LTR MaLR -111 504 438 240 186 0 0 chr3 93356744 93356787 -134167791 + MIR SINE MIR 210 252 -10 1449 106 60 5 chr3 93356830 93357048 -134167530 - MLT2A1 LTR ERVL -7 437 208 3960 124 114 127 chr3 93357052 93358474 -134166104 + pTR5 LTR ERV1 743 2438 0 2402 157 9 41 chr3 93358634 93359094 -134165484 - MER65A LTR ERV1 0 445 1 229 287 128 0 chr3 93359348 93359442 -134165136 - MLT1I LTR MaLR -26 383 278 337 241 103 9 chr3 93359517 93359633 -134164945 - MLT1I LTR MaLR -257 152 26 276 321 19 0 chr3 93361095 93361201 -134163377 - MLT1I LTR MaLR -241 168 61 399 319 128 13 chr3 93361371 93361597 -134162981 - MIR SINE MIR -2 260 9 1609 224 47 7 chr3 93363685 93364091 -134160487 - L1MD2 LINE L1 -26 6333 5912 558 235 68 6 chr3 93364087 93364249 -134160329 - L1MDb LINE L1 -1931 4609 4438 * 322 140 0 0 chr3 93364259 93364316 -134160262 - MLT2B1 LTR ERVL 0 520 464 312 162 69 29 chr3 93364325 93364498 -134160080 + (TA)n Simple_repeat Simple_repeat 1 180 0 2123 224 53 13 chr3 93364498 93364948 -134159630 - MLT2B1 LTR ERVL -52 468 1 2133 271 44 8 chr3 93364948 93365790 -134158788 - L1MDb LINE L1 -2099 4441 3570 * 3457 244 61 30 chr3 93365786 93367637 -134156941 - L1MDb LINE L1 -3890 2650 830 477 259 81 43 chr3 93368157 93368290 -134156288 - L1MDb LINE L1 -6312 228 85 1503 169 140 38 chr3 93368290 93368740 -134155838 + LTR54B LTR ERV1 1 496 -2 477 259 81 43 chr3 93368740 93368791 -134155787 - L1MDb LINE L1 -6455 85 37 2013 172 12 3 chr3 93368795 93369133 -134155445 - MER61A LTR ERV1 -2 341 1 2447 95 12 4 chr3 93369134 93369812 -134154766 - MER61A-int LTR ERV1 -1 5216 4491 472 171 0 13 chr3 93369803 93369879 -134154699 - MER61A-int LTR ERV1 -645 4572 4498 * 9833 86 10 27 chr3 93369875 93371368 -134153210 - MER61A-int LTR ERV1 -2354 2863 1396 2574 180 39 39 chr3 93371348 93371914 -134152664 - MER61A-int LTR ERV1 -4650 567 2 * 2008 172 9 9 chr3 93371915 93372258 -134152320 - MER61A LTR ERV1 0 343 1 305 209 22 66 chr3 93372476 93372567 -134152011 - MIR3 SINE MIR -37 171 85 644 289 54 44 chr3 93372722 93373037 -134151541 - L2 LINE L2 0 3313 2996 666 243 7 0 chr3 93373417 93373561 -134151017 + MER58B DNA MER1_type 197 341 0 21 36 0 0 chr3 93373726 93373754 -134150824 + AT_rich Low_complexity Low_complexity 1 28 0 3817 154 5 7 chr3 93373897 93374494 -134150084 - MER72 LTR ERV1 -126 596 1 525 363 58 13 chr3 93374749 93375058 -134149520 + L2 LINE L2 29 351 -2963 3274 138 13 19 chr3 93375117 93375659 -134148919 - MER34C LTR ERV1 0 585 47 250 307 13 0 chr3 93375668 93375743 -134148835 + L2 LINE L2 486 561 -2753 313 182 0 39 chr3 93375750 93375827 -134148751 + MER53 DNA DNA 2 75 -114 770 345 58 10 chr3 93375864 93376261 -134148317 + L2 LINE L2 578 993 -2321 2834 140 83 18 chr3 93376262 93376818 -134147760 - LTR49 LTR ERV1 -3 592 1 512 359 14 5 chr3 93376827 93377039 -134147539 + L2 LINE L2 1490 1703 -1611 2168 120 23 0 chr3 93377046 93377345 -134147233 + AluSp SINE Alu 1 306 -7 1992 245 83 20 chr3 93377355 93377906 -134146672 - LTR26 LTR ERV1 -2 601 16 1125 302 257 4 chr3 93377923 93378731 -134145847 + L2 LINE L2 1715 2727 -587 754 244 112 84 chr3 93378774 93379228 -134145350 + LTR48B LTR ERV1 1 467 -177 283 232 120 35 chr3 93379243 93379385 -134145193 - LTR28 LTR ERV1 -16 1004 851 881 222 128 43 chr3 93379386 93379801 -134144777 - LTR1B LTR ERV1 -318 508 59 798 181 39 13 chr3 93379836 93380001 -134144577 + LTR48 LTR ERV1 455 747 -31 838 138 7 7 chr3 93380351 93380503 -134144075 + CT-rich Low_complexity Low_complexity 4 155 0 265 182 27 136 chr3 93380503 93380613 -134143965 - L1MEd LINE L1 -5735 384 287 200 149 21 0 chr3 93381488 93381535 -134143043 + (TA)n Simple_repeat Simple_repeat 1 48 0 213 267 17 0 chr3 93381560 93381620 -134142958 + (TA)n Simple_repeat Simple_repeat 1 61 0 248 200 17 0 chr3 93381644 93381704 -134142874 + (TA)n Simple_repeat Simple_repeat 1 61 0 1753 146 3 75 chr3 93382029 93382350 -134142228 + AluSx SINE Alu 1 298 -14 1172 195 8 18 chr3 93382420 93382944 -134141634 - MER34B LTR ERV1 0 565 7 1918 137 40 26 chr3 93383106 93383486 -134141092 - L1MA3 LINE L1 -2 6303 5919 1843 148 22 6 chr3 93383486 93383797 -134140781 + MER50 LTR ERV1 1 316 -418 1643 182 14 7 chr3 93383789 93384085 -134140493 + MER50 LTR ERV1 434 731 -3 * 742 122 0 0 chr3 93384088 93384195 -134140383 - L1MA3 LINE L1 -383 5922 5816 194 264 0 69 chr3 93385606 93385678 -134138900 - MIR SINE MIR -41 221 155 612 291 111 59 chr3 93387496 93388019 -134136559 - L2 LINE L2 -1155 2159 1610 1488 344 110 7 chr3 93388019 93388764 -134135814 - L2 LINE L2 -2386 928 107 1228 256 98 47 chr3 93388770 93389242 -134135336 + MLT1D LTR MaLR 2 497 -8 239 0 0 31 chr3 93389367 93389399 -134135179 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 3955 30 0 0 chr3 93389414 93389877 -134134701 - L1PA4 LINE L1 -16 6139 5677 2484 41 3 0 chr3 93389931 93390223 -134134355 - AluY SINE Alu -18 293 1 619 276 59 23 chr3 93390266 93390318 -134134260 - MLT1G1 LTR MaLR -315 275 226 1188 94 139 0 chr3 93390318 93390520 -134134058 + MER30 DNA MER1_type 1 230 0 619 276 59 23 chr3 93390520 93390703 -134133875 - MLT1G1 LTR MaLR -364 226 42 2314 74 182 3 chr3 93391206 93391586 -134132992 - LTR7 LTR ERV1 -2 448 1 201 39 0 0 chr3 93391588 93391614 -134132964 + (TG)n Simple_repeat Simple_repeat 2 27 0 189 0 0 0 chr3 93392357 93392378 -134132200 + (CA)n Simple_repeat Simple_repeat 2 22 0 207 209 0 0 chr3 93393923 93393966 -134130612 + A-rich Low_complexity Low_complexity 1 43 0 34 0 0 0 chr3 93394238 93394272 -134130306 + AT_rich Low_complexity Low_complexity 1 34 0 1800 168 30 72 chr3 93394304 93394475 -134130103 + MLT1B LTR MaLR 3 180 -210 2300 117 0 0 chr3 93394475 93394783 -134129795 + AluSx SINE Alu 3 310 -2 1800 168 30 72 chr3 93394783 93395016 -134129562 + MLT1B LTR MaLR 180 390 0 355 337 55 25 chr3 93395148 93395311 -134129267 - HAL1 LINE L1 -115 2392 2225 1092 254 42 28 chr3 93395656 93395944 -134128634 - MLT2E LTR ERVL -2 626 335 506 230 37 7 chr3 93396166 93396301 -134128277 - HAL1 LINE L1 -838 1669 1531 318 344 70 16 chr3 93396389 93396517 -134128061 - HAL1 LINE L1 -1641 866 732 344 301 112 79 chr3 93396562 93397007 -134127571 - HAL1 LINE L1 -1989 518 59 220 333 127 66 chr3 93397187 93397415 -134127163 - L2 LINE L2 -16 3256 3015 192 313 194 7 chr3 93397923 93398067 -134126511 - MIR SINE MIR -64 198 28 309 70 0 0 chr3 93398141 93398184 -134126394 + MADE1 DNA Mariner 36 78 -2 2647 30 3 0 chr3 93398356 93398658 -134125920 - AluY SINE Alu -5 306 4 414 0 0 0 chr3 93400359 93400405 -134124173 + (CA)n Simple_repeat Simple_repeat 2 47 0 225 211 0 0 chr3 93400832 93400889 -134123689 + (TG)n Simple_repeat Simple_repeat 2 58 0 908 124 0 0 chr3 93401039 93401168 -134123410 - AluSc SINE Alu -15 294 166 2038 138 0 3 chr3 93401270 93401568 -134123010 - AluSx SINE Alu -15 297 1 557 241 15 62 chr3 93401904 93402099 -134122479 - L1ME2 LINE L1 -33 6131 5946 421 289 39 19 chr3 93402128 93402284 -134122294 + MIR SINE MIR 48 206 -56 936 243 12 58 chr3 93402511 93402754 -134121824 - MIR SINE MIR -30 232 1 2446 146 44 7 chr3 93403271 93403682 -134120896 - MSTB LTR MaLR 0 426 1 277 287 69 0 chr3 93404409 93404496 -134120082 - MIR SINE MIR -78 184 92 345 218 228 0 chr3 93404551 93404652 -134119926 + MER63 DNA MER1_type 1 750 -86 240 284 37 0 chr3 93404657 93404738 -134119840 + MER63 DNA MER1_type 977 1060 0 1124 201 43 112 chr3 93405534 93405840 -134118738 - MLT1A1 LTR MaLR 0 365 90 2325 101 0 0 chr3 93405840 93406138 -134118440 - AluSx SINE Alu -14 298 1 1124 201 43 112 chr3 93406138 93406223 -134118355 - MLT1A1 LTR MaLR -275 90 1 255 191 0 0 chr3 93407410 93407473 -134117105 + (TA)n Simple_repeat Simple_repeat 1 63 0 441 380 20 5 chr3 93408605 93408805 -134115773 - MIR SINE MIR -48 214 12 1799 122 0 0 chr3 93409446 93409692 -134114886 - AluSx SINE Alu -6 306 61 1020 186 17 17 chr3 93410067 93410303 -134114275 + L1MB8 LINE L1 5933 6168 -10 283 145 29 0 chr3 93410303 93410372 -134114206 + (TA)n Simple_repeat Simple_repeat 1 71 0 1287 256 33 77 chr3 93410877 93411421 -134113157 + MLT2B1 LTR ERVL 1 520 0 756 213 71 5 chr3 93411612 93411759 -134112819 - L1MA9 LINE L1 -5 6307 6140 429 20 0 0 chr3 93411759 93411809 -134112769 + (TG)n Simple_repeat Simple_repeat 1 50 0 756 213 71 5 chr3 93411809 93411872 -134112706 - L1MA9 LINE L1 -172 6140 6083 6333 189 87 26 chr3 93412133 93412544 -134112034 - L1 LINE L1 -1257 4889 4504 1680 182 38 15 chr3 93412544 93412884 -134111694 - MER7A DNA MER2_type 0 346 1 6333 189 87 26 chr3 93412884 93414139 -134110439 - L1 LINE L1 -1642 4504 3122 332 212 59 0 chr3 93414140 93414225 -134110353 + ERVL-B1 LTR ERVL 27 116 -5648 3943 171 33 41 chr3 93414226 93415034 -134109544 + ERVL-B1 LTR ERVL 4956 5757 -7 1244 254 24 81 chr3 93415034 93415542 -134109036 + MLT2B1 LTR ERVL 1 479 -41 240 133 89 0 chr3 93415590 93415635 -134108943 + MLT2B1 LTR ERVL 472 520 0 259 279 120 60 chr3 93415640 93415823 -134108755 - MLT1L LTR MaLR 0 615 422 372 322 7 34 chr3 93416177 93416326 -134108252 + MIR SINE MIR 118 262 0 1372 30 0 6 chr3 93416859 93417026 -134107552 - L1PA4 LINE L1 -3 6152 5987 385 361 64 56 chr3 93417386 93418216 -134106362 + L1MC4a LINE L1 7116 8032 -10 1023 156 99 33 chr3 93418681 93418892 -134105686 + AluJb SINE Alu 86 310 -2 1007 213 121 29 chr3 93419219 93419533 -134105045 + MER2 DNA MER2_type 2 344 0 1585 272 138 34 chr3 93419874 93421438 -134103140 - L1MEc LINE L1 -2388 3827 2105 915 283 42 33 chr3 93421438 93421891 -134102687 + LTR16A1 LTR ERVL 1 457 0 1585 272 138 34 chr3 93421891 93421971 -134102607 - L1MEc LINE L1 -4110 2105 2035 296 250 16 0 chr3 93422228 93422292 -134102286 + LTR16A1 LTR ERVL 393 457 0 21 36 0 0 chr3 93423793 93423821 -134100757 + AT_rich Low_complexity Low_complexity 1 28 0 303 365 20 20 chr3 93423995 93424143 -134100435 + MIR3 SINE MIR 16 163 -45 591 238 66 55 chr3 93424528 93424709 -134099869 - MER5A DNA MER1_type -5 184 2 23 78 0 0 chr3 93425049 93425100 -134099478 + AT_rich Low_complexity Low_complexity 1 51 0 862 236 125 12 chr3 93425905 93426351 -134098227 + MLT1H LTR MaLR 8 549 0 336 322 164 34 chr3 93426373 93426600 -134097978 + MLT1J LTR MaLR 17 213 -298 1919 139 20 0 chr3 93426600 93426894 -134097684 - AluSx SINE Alu -12 300 1 336 322 164 34 chr3 93426894 93427051 -134097527 + MLT1J LTR MaLR 213 451 -60 185 250 77 0 chr3 93427284 93427336 -134097242 - MIR SINE MIR -2 260 205 243 152 0 0 chr3 93428062 93428108 -134096470 + (TG)n Simple_repeat Simple_repeat 2 47 0 337 20 40 0 chr3 93428887 93428937 -134095641 + (TG)n Simple_repeat Simple_repeat 2 53 0 1940 161 0 0 chr3 93430600 93430910 -134093668 + AluSx SINE Alu 3 312 0 201 143 0 0 chr3 93431905 93431940 -134092638 + (CAA)n Simple_repeat Simple_repeat 2 36 0 261 321 94 28 chr3 93432792 93432898 -134091680 - L3 LINE CR1 -21 1556 1444 527 156 73 18 chr3 93435230 93435339 -134089239 - MER53 DNA DNA -2 187 73 315 217 25 83 chr3 93435351 93435471 -134089107 - MER53 DNA DNA -76 113 1 386 297 39 0 chr3 93435842 93435970 -134088608 + MER94 DNA DNA 1 133 -1 297 333 23 97 chr3 93437355 93437788 -134086790 - L2 LINE L2 -8 3264 2864 225 0 0 0 chr3 93437956 93437981 -134086597 + (TG)n Simple_repeat Simple_repeat 2 26 0 1917 213 19 36 chr3 93438180 93438655 -134085923 - MLT1C LTR MaLR 0 467 1 290 216 39 111 chr3 93438701 93438854 -134085724 + MIR SINE MIR 114 255 -7 2125 111 3 0 chr3 93440714 93441020 -134083558 - AluSg SINE Alu -3 307 1 2712 19 3 0 chr3 93441025 93441332 -134083246 - AluY SINE Alu -3 308 1 254 203 25 63 chr3 93441640 93441719 -134082859 + MER116 DNA Mariner 3 78 -2 24 53 0 0 chr3 93441921 93441959 -134082619 + AT_rich Low_complexity Low_complexity 1 38 0 313 269 65 9 chr3 93442194 93442312 -134082266 - MIR SINE MIR -62 146 38 233 266 78 16 chr3 93442600 93442664 -134081914 - L2 LINE L2 -3 3269 3202 259 304 192 55 chr3 93443035 93443416 -134081162 - L2 LINE L2 -13 3300 2868 27 81 0 0 chr3 93444400 93444462 -134080116 + AT_rich Low_complexity Low_complexity 1 62 0 296 383 17 28 chr3 93445065 93445245 -134079333 + MIR SINE MIR 48 225 -37 180 319 159 0 chr3 93445329 93445398 -134079180 + L2 LINE L2 3186 3265 -7 192 283 19 0 chr3 93445927 93445980 -134078598 + L2 LINE L2 1626 1679 -1635 61 88 0 0 chr3 93446014 93446173 -134078405 + AT_rich Low_complexity Low_complexity 1 159 0 364 188 181 14 chr3 93446253 93446397 -134078181 - Charlie2a DNA MER1_type -3 2859 2692 1520 265 47 16 chr3 93446397 93446887 -134077691 + L1MC4a LINE L1 7304 7808 0 2146 241 155 35 chr3 93446919 93448265 -134076313 - Charlie2a DNA MER1_type -514 2348 841 450 36 0 0 chr3 93448632 93448688 -134075890 + (TG)n Simple_repeat Simple_repeat 2 57 0 3464 265 105 30 chr3 93449131 93450774 -134073804 + HAL1 LINE L1 362 2127 -380 439 224 15 94 chr3 93450872 93451073 -134073505 - 7SK RNA RNA -8 185 1 383 257 139 32 chr3 93451109 93451296 -134073282 + HAL1 LINE L1 2146 2352 -155 311 366 15 0 chr3 93453479 93453610 -134070968 - MIR3 SINE MIR -1 207 75 230 320 39 0 chr3 93453669 93453747 -134070831 - MIR SINE MIR -68 140 60 435 207 0 9 chr3 93453787 93453898 -134070680 - L1PB3 LINE L1 -2 6152 6043 5259 247 29 41 chr3 93453900 93456075 -134068503 - L1PBa LINE L1 -2738 4124 2859 2197 99 10 0 chr3 93456075 93456368 -134068210 - AluSc SINE Alu -13 296 1 5259 247 29 41 chr3 93456368 93459192 -134065386 - L1PBa LINE L1 -4003 2859 3 1103 320 89 38 chr3 93459302 93459939 -134064639 + L2 LINE L2 2241 2910 -404 225 0 0 0 chr3 93459953 93459978 -134064600 + (T)n Simple_repeat Simple_repeat 1 25 0 1408 260 136 25 chr3 93460104 93460619 -134063959 + MLT1E LTR MaLR 1 572 -21 180 0 0 0 chr3 93461583 93461603 -134062975 + (T)n Simple_repeat Simple_repeat 1 20 0 249 57 0 0 chr3 93461691 93461726 -134062852 + (CA)n Simple_repeat Simple_repeat 1 35 0 601 254 0 0 chr3 93462623 93462741 -134061837 + FLAM_A SINE Alu 1 118 -15 204 40 0 0 chr3 93462837 93462862 -134061716 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1257 220 15 31 chr3 93462957 93463365 -134061213 - MER93b LTR ERV1 -4 369 6 342 0 0 0 chr3 93464495 93464533 -134060045 + (TG)n Simple_repeat Simple_repeat 1 38 0 2338 67 0 3 chr3 93465592 93465891 -134058687 + AluY SINE Alu 1 298 -13 6859 137 34 3 chr3 93466268 93467887 -134056691 + L1MA2 LINE L1 4626 6304 0 21 57 0 0 chr3 93467887 93467922 -134056656 + AT_rich Low_complexity Low_complexity 1 35 0 406 355 35 6 chr3 93468026 93468198 -134056380 - MIR SINE MIR -66 196 20 2344 25 11 14 chr3 93468241 93468548 -134056030 - AluY SINE Alu 0 306 1 236 315 0 14 chr3 93468577 93468650 -134055928 - MLT1I LTR MaLR -144 265 194 445 297 0 8 chr3 93469476 93469604 -134054974 - MLT1I LTR MaLR -278 131 5 1288 196 29 13 chr3 93470544 93470860 -134053718 - MER33 DNA MER1_type -1 323 3 240 178 22 0 chr3 93470968 93471013 -134053565 + L2 LINE L2 3261 3306 -7 409 235 49 20 chr3 93471042 93471144 -134053434 - L2 LINE L2 -17 3296 3192 181 346 0 0 chr3 93471362 93471414 -134053164 + L2 LINE L2 2887 2938 -334 31 44 0 0 chr3 93472439 93472484 -134052094 + AT_rich Low_complexity Low_complexity 1 45 0 946 257 43 26 chr3 93473744 93474048 -134050530 - L1ME LINE L1 -597 5567 5259 1790 183 24 6 chr3 93475241 93475579 -134048999 + MER50 LTR ERV1 1 344 -390 1762 189 54 10 chr3 93475679 93476065 -134048513 + L1MB2 LINE L1 5768 6170 -1 253 250 0 0 chr3 93476660 93476716 -134047862 + Charlie8 DNA MER1_type 1362 1417 -1000 1979 134 62 20 chr3 93477055 93477412 -134047166 - THE1C LTR MaLR -3 372 1 1998 160 0 0 chr3 93477636 93477936 -134046642 + AluSx SINE Alu 2 301 -11 22 70 0 0 chr3 93478331 93478374 -134046204 + AT_rich Low_complexity Low_complexity 1 43 0 2563 121 2 2 chr3 93479896 93480293 -134044285 - L1PA13 LINE L1 -11 6152 5756 572 118 0 0 chr3 93480293 93480378 -134044200 + L1PA13 LINE L1 5654 5738 -430 261 357 0 0 chr3 93482197 93482281 -134042297 + MER5A DNA MER1_type 31 114 -75 2179 129 32 27 chr3 93482285 93482658 -134041920 - THE1C LTR MaLR 0 375 1 917 304 62 38 chr3 93482884 93483354 -134041224 - L2 LINE L2 -6 3307 2827 1487 167 164 31 chr3 93483386 93483740 -134040838 + MSTA LTR MaLR 15 415 -13 3466 276 90 112 chr3 93483758 93484497 -134040081 - L2 LINE L2 -540 2774 2020 2289 98 10 0 chr3 93484497 93484804 -134039774 + AluY SINE Alu 1 310 -1 3466 276 90 112 chr3 93484804 93485290 -134039288 - L2 LINE L2 -1294 2020 1525 1726 208 136 32 chr3 93485290 93485761 -134038817 + MLT2B1 LTR ERVL 1 520 0 3466 276 90 112 chr3 93485761 93487269 -134037309 - L2 LINE L2 -1789 1525 32 21 36 0 0 chr3 93488452 93488480 -134036098 + AT_rich Low_complexity Low_complexity 1 28 0 232 381 59 56 chr3 93488668 93488988 -134035590 - L2 LINE L2 -1 3271 2951 2384 54 10 3 chr3 93489125 93489422 -134035156 + AluY SINE Alu 1 299 -12 263 250 0 16 chr3 93489607 93489671 -134034907 - MLT1K LTR MaLR -346 242 180 2150 100 45 0 chr3 93490124 93490413 -134034165 + AluSq SINE Alu 1 302 -11 213 39 0 0 chr3 93490461 93490469 -134034109 + (CA)n Simple_repeat Simple_repeat 1 34 0 213 39 0 0 chr3 93490469 93490495 -134034083 + (CA)n Simple_repeat Simple_repeat 1 26 0 966 245 99 73 chr3 93492548 93493060 -134031518 + MLT1E LTR MaLR 1 585 -8 269 346 124 13 chr3 93493626 93493779 -134030799 - MIR SINE MIR -16 246 77 314 222 32 63 chr3 93495252 93495378 -134029200 - MIR3 SINE MIR -37 171 50 204 97 0 0 chr3 93496534 93496565 -134028013 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1589 225 0 3 chr3 93496565 93496867 -134027711 - 7SLRNA srpRNA srpRNA -19 301 1 207 157 39 20 chr3 93497424 93497475 -134027103 + (TG)n Simple_repeat Simple_repeat 2 53 0 580 243 22 39 chr3 93499237 93499418 -134025160 + MER5B DNA MER1_type 1 178 0 2580 148 67 86 chr3 93500314 93501046 -134023532 - L1MCa LINE L1 -4954 1472 755 261 0 0 0 chr3 93501045 93501081 -134023497 + L1PA3 LINE L1 6117 6152 -3 * 3828 184 26 39 chr3 93501128 93501903 -134022675 - L1MCa LINE L1 -5656 770 6 708 86 17 17 chr3 93502152 93502268 -134022310 + MLT2A2 LTR ERVL 1 116 -337 2660 70 0 10 chr3 93552355 93552738 -133971840 + LTR7 LTR ERV1 70 448 -2 5604 74 10 155 chr3 93552740 93553958 -133970620 + HERVH LTR ERV1 1 1041 -6672 2274 81 7 19 chr3 93554142 93554450 -133970128 + AluSg SINE Alu 1 304 -6 240 188 0 0 chr3 93554478 93554526 -133970052 - Charlie1 DNA MER1_type -2 2759 2712 2720 149 79 11 chr3 93554545 93555089 -133969489 + MER34C LTR ERV1 5 585 0 2673 124 23 5 chr3 93555206 93555648 -133968930 - HERVH LTR ERV1 -3764 3949 3500 737 159 41 0 chr3 93555647 93555792 -133968786 - HERVH LTR ERV1 -4423 3290 3140 * 8624 98 7 16 chr3 93555786 93557604 -133966974 - HERVH LTR ERV1 -4726 2987 1108 473 306 17 84 chr3 93558223 93558697 -133965881 + L1MEd LINE L1 22 463 -5656 2967 174 15 43 chr3 93558874 93559524 -133965054 + MER39 LTR ERV1 76 707 0 26 0 0 0 chr3 93560129 93560155 -133964423 + AT_rich Low_complexity Low_complexity 1 26 0 2020 95 52 3 chr3 93560160 93560486 -133964092 + L1MA3 LINE L1 5564 5905 -400 1221 209 4 20 chr3 93560486 93560730 -133963848 - AluJo SINE Alu -15 297 58 464 265 13 7 chr3 93560748 93560899 -133963679 + L1MEd LINE L1 972 1123 -4996 21 36 0 0 chr3 93561601 93561629 -133962949 + AT_rich Low_complexity Low_complexity 1 28 0 234 363 0 33 chr3 93561865 93561956 -133962622 + MIR SINE MIR 25 112 -96 197 235 59 0 chr3 93562023 93562074 -133962504 + MIR SINE MIR 172 225 -37 1942 159 96 23 chr3 93562417 93562812 -133961766 + MSTA LTR MaLR 1 424 -4 1010 197 83 17 chr3 93562830 93563271 -133961307 - LTR48 LTR ERV1 -11 776 250 2177 118 3 3 chr3 93563298 93563602 -133960976 + AluSq SINE Alu 1 304 -9 1325 185 124 20 chr3 93563608 93563964 -133960614 - MSTA LTR MaLR -35 393 1 653 281 18 0 chr3 93564070 93564241 -133960337 + MIR SINE MIR 87 260 -2 228 342 108 0 chr3 93564267 93564387 -133960191 + MIR SINE MIR 129 261 -1 839 188 75 43 chr3 93564561 93564893 -133959685 - LTR37B LTR ERV1 -6 462 111 369 152 98 33 chr3 93565225 93565317 -133959261 - L1MA10 LINE L1 -28 6306 6209 4805 200 32 1 chr3 93565334 93566689 -133957889 - L1MC1 LINE L1 -146 6467 5078 * 6400 161 65 18 chr3 93566682 93567991 -133956587 - L1MC1 LINE L1 -5030 1396 27 22 56 0 0 chr3 93568443 93568479 -133956099 + AT_rich Low_complexity Low_complexity 1 36 0 1375 214 79 9 chr3 93571300 93571641 -133952937 + MLT1A1 LTR MaLR 1 365 0 23 33 0 0 chr3 93571670 93571700 -133952878 + AT_rich Low_complexity Low_complexity 1 30 0 528 274 113 41 chr3 93572546 93572838 -133951740 + Charlie2b DNA MER1_type 2 314 -2468 317 237 10 72 chr3 93572843 93572940 -133951638 + Charlie2b DNA MER1_type 566 656 -2126 180 245 0 0 chr3 93572952 93573005 -133951573 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 225 65 0 0 chr3 93573665 93573696 -133950882 + (CA)n Simple_repeat Simple_repeat 2 32 0 361 301 65 49 chr3 93573935 93574181 -133950397 - L1M4 LINE L1 -2210 3936 3687 183 213 43 0 chr3 93574189 93574236 -133950342 + L2 LINE L2 3263 3311 -2 350 275 75 33 chr3 93574347 93574467 -133950111 - L2 LINE L2 0 3272 3148 373 339 95 5 chr3 93574733 93574922 -133949656 + L3b LINE CR1 1115 1320 -263 24 32 0 0 chr3 93575144 93575175 -133949403 + AT_rich Low_complexity Low_complexity 1 31 0 330 226 81 32 chr3 93575267 93575391 -133949187 - MER94 DNA DNA 0 134 5 291 371 71 0 chr3 93576351 93576491 -133948087 - L2 LINE L2 -1 3271 3122 324 278 0 41 chr3 93576500 93576597 -133947981 + MER82 DNA MER2_type 2 94 -559 192 316 53 0 chr3 93576601 93576658 -133947920 + L2 LINE L2 3251 3310 -3 185 320 67 13 chr3 93578454 93578529 -133946049 + L2 LINE L2 3125 3203 -69 889 156 63 63 chr3 93579312 93579517 -133945061 + MER3 DNA MER1_type 5 209 0 239 149 60 45 chr3 93581015 93581082 -133943496 - L1MC4 LINE L1 -1 8041 7974 2938 190 81 129 chr3 93581082 93582052 -133942526 + MER21A LTR ERV1 1 924 -7 2495 237 55 56 chr3 93582060 93583010 -133941568 - L1MC4a LINE L1 -65 7743 6795 25 75 0 0 chr3 93583207 93583260 -133941318 + AT_rich Low_complexity Low_complexity 1 53 0 336 143 0 0 chr3 93584733 93584789 -133939789 + (A)n Simple_repeat Simple_repeat 1 56 0 538 204 88 0 chr3 93585356 93585469 -133939109 - AluJb SINE Alu -187 125 3 2454 64 7 0 chr3 93585837 93586133 -133938445 - AluY SINE Alu -13 298 1 1148 256 73 32 chr3 93586490 93586773 -133937805 + MER34B LTR ERV1 1 271 -271 1641 137 30 4 chr3 93586773 93587043 -133937535 - AluSx SINE Alu -35 277 1 1148 256 73 32 chr3 93587043 93587280 -133937298 + MER34B LTR ERV1 271 542 0 192 291 36 18 chr3 93587361 93587416 -133937162 + MIR SINE MIR 31 86 -176 282 29 0 0 chr3 93587425 93587460 -133937118 + (CA)n Simple_repeat Simple_repeat 2 36 0 6039 68 5 8 chr3 93588700 93589482 -133935096 - LTR17 LTR ERV1 0 780 1 5039 121 15 20 chr3 93590502 93591163 -133933415 - MER4E LTR ERV1 0 779 121 2161 105 99 0 chr3 93591163 93591506 -133933072 + MER51B LTR ERV1 1 377 0 5039 121 15 20 chr3 93591506 93591627 -133932951 - MER4E LTR ERV1 -658 121 1 215 61 30 0 chr3 93594436 93594469 -133930109 + (CA)n Simple_repeat Simple_repeat 2 35 0 1073 261 48 73 chr3 93595119 93595305 -133929273 - MER39 LTR ERV1 0 707 518 222 62 0 0 chr3 93595305 93595337 -133929241 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 1073 261 48 73 chr3 93595337 93595613 -133928965 - MER39 LTR ERV1 -189 518 257 284 222 62 12 chr3 93595597 93595678 -133928900 - LTR29 LTR ERV1 -537 85 1 * 22 0 0 0 chr3 93595939 93595961 -133928617 + AT_rich Low_complexity Low_complexity 1 22 0 430 160 11 11 chr3 93595964 93596058 -133928520 + CT-rich Low_complexity Low_complexity 3 96 0 1031 245 110 67 chr3 93596727 93597344 -133927234 + LTR48B LTR ERV1 1 644 0 22 0 0 0 chr3 93597480 93597502 -133927076 + AT_rich Low_complexity Low_complexity 1 22 0 1327 132 32 9 chr3 93597672 93597867 -133926711 + MER39B LTR ERV1 3 202 -451 4927 113 33 12 chr3 93597867 93598622 -133925956 + MER4E LTR ERV1 1 771 -8 2283 171 26 0 chr3 93598628 93599019 -133925559 + MER39B LTR ERV1 200 600 -53 2425 56 3 10 chr3 93599019 93599324 -133925254 - AluY SINE Alu -8 303 1 310 306 48 32 chr3 93599430 93599554 -133925024 - HERVL40 LTR ERVL -3833 1697 1572 1657 292 81 34 chr3 93599675 93600418 -133924160 - HERVL40 LTR ERVL -4172 1358 581 608 332 31 22 chr3 93600454 93600683 -133923895 - L2 LINE L2 -243 3070 2840 996 137 0 0 chr3 93600777 93600916 -133923662 - AluSg/x SINE Alu -30 282 144 420 283 108 18 chr3 93601820 93601859 -133922719 + MER5A DNA MER1_type 3 37 -152 487 81 0 47 chr3 93601859 93601945 -133922633 + L1MA1 LINE L1 6221 6302 0 420 283 108 18 chr3 93601945 93602071 -133922507 + MER5A DNA MER1_type 37 183 -6 7994 169 14 22 chr3 93603002 93604233 -133920345 + L1P3 LINE L1 3 1242 -5219 231 88 0 0 chr3 93604233 93604267 -133920311 + (CAA)n Simple_repeat Simple_repeat 2 35 0 7994 169 14 22 chr3 93604267 93605868 -133918710 + L1P3 LINE L1 1242 2882 -3579 409 331 78 5 chr3 93606441 93606640 -133917938 + MIR SINE MIR 38 248 -14 788 238 104 110 chr3 93607045 93607410 -133917168 - MLT1A1 LTR MaLR 0 365 3 269 186 20 29 chr3 93607756 93607858 -133916720 + GA-rich Low_complexity Low_complexity 1 101 0 25 51 0 0 chr3 93608301 93608340 -133916238 + AT_rich Low_complexity Low_complexity 1 39 0 555 314 49 33 chr3 93608717 93608962 -133915616 - MIR SINE MIR -2 260 12 198 324 127 0 chr3 93609968 93610039 -133914539 - MIR SINE MIR -180 82 3 200 342 0 61 chr3 93610337 93610451 -133914127 + MIR3 SINE MIR 48 154 -54 1140 269 128 44 chr3 93611164 93611639 -133912939 + MLT2B1 LTR ERVL 1 515 -5 226 396 50 0 chr3 93612073 93612174 -133912404 - L2 LINE L2 -9 3263 3158 1549 191 71 3 chr3 93612178 93612503 -133912075 + MER7A DNA MER2_type 1 345 -1 209 222 0 0 chr3 93612908 93612953 -133911625 + T-rich Low_complexity Low_complexity 1 45 0 337 313 106 6 chr3 93613043 93613203 -133911375 + MIR SINE MIR 5 180 -82 2883 175 18 62 chr3 93613641 93613887 -133910691 - MER6A DNA MER2_type -263 602 347 2059 147 33 30 chr3 93613887 93614248 -133910330 - THE1B LTR MaLR -2 362 1 2883 175 18 62 chr3 93614248 93614630 -133909948 - MER6A DNA MER2_type -518 347 2 401 323 0 8 chr3 93616153 93616277 -133908301 + MIR3 SINE MIR 78 200 -8 1335 273 114 27 chr3 93616318 93616798 -133907780 - MLT1D LTR MaLR 0 505 1 1166 249 158 38 chr3 93616806 93617462 -133907116 + LTR1B LTR ERV1 34 980 -40 962 237 5 15 chr3 93618118 93618316 -133906262 + MER45C DNA AcHobo 1 196 -757 294 114 0 2 chr3 93618508 93618648 -133905930 + AluSp SINE Alu 1 172 -131 423 119 15 0 chr3 93618655 93618722 -133905856 + AluSc SINE Alu 224 291 -18 394 155 12 71 chr3 93618756 93618840 -133905738 + MER45C DNA AcHobo 875 953 0 882 197 47 21 chr3 93618854 93619047 -133905531 - MER20 DNA MER1_type -3 216 19 1012 223 55 102 chr3 93619278 93619847 -133904731 - MER39 LTR ERV1 -2 705 1 324 301 8 49 chr3 93619851 93619974 -133904604 + MIR SINE MIR 127 244 -18 251 93 23 0 chr3 93619981 93620024 -133904554 + (TTA)n Simple_repeat Simple_repeat 1 44 0 23 0 0 0 chr3 93621586 93621609 -133902969 + AT_rich Low_complexity Low_complexity 1 23 0 1427 197 94 7 chr3 93622797 93623106 -133901472 + MLT1A1 LTR MaLR 30 365 0 218 194 0 0 chr3 93625739 93625775 -133898803 + (CATA)n Simple_repeat Simple_repeat 4 39 0 543 179 75 0 chr3 93626522 93626628 -133897950 + Tigger3(Golem) DNA MER2_type 29 142 -2887 1430 172 0 4 chr3 93626634 93626872 -133897706 + Tigger3(Golem) DNA MER2_type 2792 3028 -1 200 262 82 0 chr3 93626872 93626933 -133897645 + L2 LINE L2 3161 3226 -87 532 277 122 0 chr3 93627020 93627168 -133897410 - MIR SINE MIR -92 170 5 2108 143 117 10 chr3 93627225 93627610 -133896968 + MSTA LTR MaLR 1 426 -2 8307 194 26 15 chr3 93627612 93629245 -133895333 + MSTA-int LTR MaLR 1 1651 0 2265 137 116 11 chr3 93629248 93629628 -133894950 + MSTA LTR MaLR 4 423 -5 26 30 0 0 chr3 93630583 93630616 -133893962 + AT_rich Low_complexity Low_complexity 1 33 0 198 0 0 0 chr3 93631043 93631065 -133893513 + (AATTG)n Simple_repeat Simple_repeat 1 22 0 359 214 101 0 chr3 93631666 93631755 -133892823 - MIR SINE MIR -2 260 163 1449 199 4 4 chr3 93632280 93632552 -133892026 + AluJo SINE Alu 1 272 -40 915 96 22 22 chr3 93632552 93632730 -133891848 + (GAAA)n Simple_repeat Simple_repeat 1 178 0 434 158 41 27 chr3 93632730 93632876 -133891702 + GA-rich Low_complexity Low_complexity 2 149 0 186 43 0 0 chr3 93632876 93632899 -133891679 + (GAAAA)n Simple_repeat Simple_repeat 1 23 0 723 144 0 0 chr3 93633713 93633817 -133890761 + AluJb SINE Alu 195 298 -14 1730 180 7 0 chr3 93634303 93634592 -133889986 + AluSx SINE Alu 6 296 -16 279 54 0 0 chr3 93635000 93635037 -133889541 + (TG)n Simple_repeat Simple_repeat 2 38 0 768 173 0 8 chr3 93636999 93637126 -133887452 + FLAM_C SINE Alu 1 126 -7 266 364 45 0 chr3 93637232 93637364 -133887214 - MIR SINE MIR -8 254 117 2479 138 3 3 chr3 93638298 93638659 -133885919 - THE1B LTR MaLR -1 363 3 23 33 0 0 chr3 93638692 93638722 -133885856 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 93639712 93639734 -133884844 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 93640379 93640401 -133884177 + AT_rich Low_complexity Low_complexity 1 22 0 427 233 99 64 chr3 93640556 93640839 -133883739 - MER34 LTR ERV1 -267 440 8 214 319 132 47 chr3 93640866 93641101 -133883477 - MIR SINE MIR 0 262 8 216 359 0 0 chr3 93641112 93641176 -133883402 - L2 LINE L2 -2 3311 3248 2120 164 8 16 chr3 93641199 93641577 -133883001 + THE1C LTR MaLR 1 375 0 452 260 85 67 chr3 93641623 93641846 -133882732 + MIR SINE MIR 36 262 0 218 179 0 0 chr3 93641848 93641887 -133882691 + MIR SINE MIR 160 198 -64 324 0 0 0 chr3 93642293 93642329 -133882249 + (TG)n Simple_repeat Simple_repeat 1 36 0 1539 201 89 76 chr3 93642391 93642929 -133881649 + MER34C LTR ERV1 35 579 -6 192 214 225 11 chr3 93643135 93643224 -133881354 - MIR SINE MIR 0 262 155 1316 203 89 76 chr3 93643339 93643634 -133880944 - MER34C LTR ERV1 0 585 278 2501 67 0 6 chr3 93643634 93643947 -133880631 - AluY SINE Alu 0 311 1 1316 203 89 76 chr3 93643947 93644188 -133880390 - MER34C LTR ERV1 -307 278 42 212 254 15 45 chr3 93644205 93644272 -133880306 + MIR3 SINE MIR 132 196 -12 232 35 0 0 chr3 93645547 93645576 -133879002 + LTR7 LTR ERV1 1 29 -421 457 276 18 31 chr3 93645940 93646103 -133878475 - MLT1K LTR MaLR -7 581 421 23 33 0 0 chr3 93646866 93646896 -133877682 + AT_rich Low_complexity Low_complexity 1 30 0 273 373 33 7 chr3 93649377 93649527 -133875051 + L2 LINE L2 2377 2530 -784 485 315 78 47 chr3 93649528 93649706 -133874872 - LTR33 LTR ERVL -8 513 342 1573 192 33 19 chr3 93649706 93650066 -133874512 - MLT1A1 LTR MaLR 0 365 1 485 315 78 47 chr3 93650066 93650376 -133874202 - LTR33 LTR ERVL -179 342 10 252 387 18 24 chr3 93650995 93651163 -133873415 - MIR3 SINE MIR -11 197 31 181 57 57 0 chr3 93651864 93651899 -133872679 + T-rich Low_complexity Low_complexity 2 38 0 615 214 0 0 chr3 93651901 93652018 -133872560 - AluJb SINE Alu -195 117 1 692 219 0 32 chr3 93652087 93652242 -133872336 - L1MC1 LINE L1 -9 6324 6175 248 379 48 0 chr3 93652357 93652460 -133872118 - L2 LINE L2 -5 3267 3160 344 316 133 19 chr3 93652511 93652767 -133871811 - L2 LINE L2 0 3313 3029 201 355 94 35 chr3 93652846 93653240 -133871338 - L2 LINE L2 -431 2883 2467 257 305 78 64 chr3 93655589 93655933 -133868645 - L2 LINE L2 -973 2341 1993 1228 277 59 11 chr3 93655940 93656380 -133868198 - LTR40c LTR ERVL -4 461 1 313 255 31 10 chr3 93657301 93657399 -133867179 + MLT2C1 LTR ERVL 44 143 -254 * 1556 242 20 97 chr3 93657341 93657854 -133866724 + MLT1E2 LTR MaLR 82 546 -80 1818 137 0 0 chr3 93657854 93658117 -133866461 + AluSx SINE Alu 50 312 0 1556 242 20 97 chr3 93658117 93658193 -133866385 + MLT1E2 LTR MaLR 546 626 0 687 279 71 17 chr3 93658194 93658491 -133866087 - L1MC1 LINE L1 -1863 5945 5633 428 337 11 34 chr3 93658650 93658828 -133865750 + L2 LINE L2 2869 3042 -230 306 0 0 0 chr3 93662103 93662137 -133862441 + (TG)n Simple_repeat Simple_repeat 2 35 0 1960 175 0 0 chr3 93662498 93662807 -133861771 - AluJb SINE Alu -1 311 3 2983 170 103 0 chr3 93662925 93663495 -133861083 - Tigger1 DNA MER2_type -1789 629 1 242 325 45 7 chr3 93663659 93663813 -133860765 + L2 LINE L2 1488 1647 -1667 423 349 91 22 chr3 93664747 93664979 -133859599 + L2 LINE L2 3020 3267 -5 1479 115 134 22 chr3 93667047 93667316 -133857262 + AluSg1 SINE Alu 6 304 -5 185 250 78 0 chr3 93667732 93667796 -133856782 - L2 LINE L2 0 3313 3245 351 96 0 0 chr3 93668201 93668253 -133856325 + (TG)n Simple_repeat Simple_repeat 1 52 0 21 57 0 0 chr3 93668942 93668977 -133855601 + AT_rich Low_complexity Low_complexity 1 35 0 378 0 0 0 chr3 93669414 93669456 -133855122 + (CA)n Simple_repeat Simple_repeat 2 43 0 2356 87 13 0 chr3 93669522 93669820 -133854758 - AluSx SINE Alu -9 303 2 207 0 0 0 chr3 93670190 93670213 -133854365 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2421 147 3 3 chr3 93670272 93670647 -133853931 - THE1C LTR MaLR 0 375 1 9411 126 36 42 chr3 93670649 93672237 -133852341 - THE1C-int LTR MaLR -2 1578 1 2838 97 0 0 chr3 93672237 93672610 -133851968 - THE1C LTR MaLR 0 375 3 2108 132 48 28 chr3 93672757 93673114 -133851464 + THE1B LTR MaLR 1 364 0 11244 102 20 0 chr3 93673114 93674663 -133849915 + THE1B-int LTR MaLR 1 1580 0 1841 147 69 29 chr3 93674665 93675013 -133849565 + THE1B LTR MaLR 3 364 0 208 228 13 13 chr3 93675112 93675191 -133849387 + (TATATG)n Simple_repeat Simple_repeat 4 82 0 32 67 0 0 chr3 93679255 93679315 -133845263 + AT_rich Low_complexity Low_complexity 1 60 0 319 218 35 23 chr3 93679372 93679459 -133845119 - MER5A DNA MER1_type 0 189 102 183 220 374 11 chr3 93679394 93679485 -133845093 + MER5A DNA MER1_type 35 158 -31 * 1018 185 173 46 chr3 93679863 93680187 -133844391 - MLT1A1 LTR MaLR 0 365 1 1494 199 111 19 chr3 93680250 93680611 -133843967 + MSTD LTR MaLR 1 394 -2 231 230 14 68 chr3 93680614 93680688 -133843890 - L2 LINE L2 -2 3311 3242 392 300 171 32 chr3 93681640 93681920 -133842658 - L2 LINE L2 -830 2484 2166 424 351 55 57 chr3 93681984 93682434 -133842144 - L2 LINE L2 -229 3043 2587 415 153 51 42 chr3 93682494 93682612 -133841966 + MER96B DNA MER1_type? 217 335 -82 1800 174 3 10 chr3 93683775 93684074 -133840504 + AluJb SINE Alu 2 298 -14 520 266 46 83 chr3 93684104 93684322 -133840256 - MIR SINE MIR -51 211 2 1420 134 22 22 chr3 93684874 93685142 -133839436 - Tigger2a DNA MER2_type -3 441 174 3213 239 95 26 chr3 93685142 93685871 -133838707 + MER4E LTR ERV1 1 779 0 719 207 0 35 chr3 93685871 93686044 -133838534 - Tigger2a DNA MER2_type -267 167 1 1126 306 50 61 chr3 93687580 93688001 -133836577 - L2 LINE L2 -929 2385 1961 2261 105 3 0 chr3 93688001 93688297 -133836281 + AluSp SINE Alu 1 297 -16 381 58 43 0 chr3 93688298 93688367 -133836211 + (TA)n Simple_repeat Simple_repeat 1 72 0 1126 306 50 61 chr3 93688367 93688580 -133835998 - L2 LINE L2 -1352 1962 1756 881 261 25 21 chr3 93688589 93688830 -133835748 - MIR SINE MIR -4 258 17 542 147 11 11 chr3 93689562 93689657 -133834921 + MIR SINE MIR 70 164 -98 408 99 0 0 chr3 93690138 93690209 -133834369 + (TATG)n Simple_repeat Simple_repeat 2 72 0 1804 143 3 31 chr3 93690209 93690503 -133834075 - AluSx SINE Alu -26 286 1 212 290 43 0 chr3 93691475 93691544 -133833034 - MIR SINE MIR -24 238 167 214 316 125 18 chr3 93691622 93691790 -133832788 - L2 LINE L2 -23 3290 3105 1846 136 19 36 chr3 93693011 93693320 -133831258 - AluSx SINE Alu -8 304 1 1479 181 19 52 chr3 93693852 93693972 -133830606 + AluJb SINE Alu 5 127 -185 2180 113 0 16 chr3 93693972 93694281 -133830297 - AluSg SINE Alu -4 306 3 1479 181 19 52 chr3 93694281 93694470 -133830108 + AluJb SINE Alu 127 304 -8 497 101 38 0 chr3 93694728 93694807 -133829771 - Alu SINE Alu -9 302 221 393 361 0 0 chr3 93694928 93695047 -133829531 - L2 LINE L2 0 3272 3154 216 0 0 0 chr3 93695063 93695087 -133829491 + (CA)n Simple_repeat Simple_repeat 2 25 0 1090 249 79 49 chr3 93695620 93696049 -133828529 + MLT2B1 LTR ERVL 1 442 -78 4716 280 48 23 chr3 93696057 93697668 -133826910 + HERVL-B1-B1 LTR ERVL 1 1661 -3993 1987 168 3 0 chr3 93697668 93697978 -133826600 + AluSx SINE Alu 1 311 -1 4716 280 48 23 chr3 93697978 93698120 -133826458 + HERVL-B1-B1 LTR ERVL 1661 1798 -3856 1341 144 0 116 chr3 93698121 93698405 -133826173 + AluYb8 SINE Alu 1 251 -67 19314 194 22 17 chr3 93698412 93700930 -133823648 + HERVL-B1-B1 LTR ERVL 1829 4333 -1431 1676 178 49 7 chr3 93700930 93701216 -133823362 - AluJb SINE Alu -14 298 1 19314 194 22 17 chr3 93701216 93702231 -133822347 + HERVL-B1-B1 LTR ERVL 4333 5386 -378 2431 99 0 0 chr3 93702231 93702534 -133822044 - AluSg SINE Alu -7 303 1 19314 194 22 17 chr3 93702534 93702908 -133821670 + HERVL-B1-B1 LTR ERVL 5386 5757 -7 1298 235 65 44 chr3 93702908 93703338 -133821240 + MLT2B1 LTR ERVL 1 439 -81 333 0 0 0 chr3 93703530 93703567 -133821011 + (TA)n Simple_repeat Simple_repeat 2 38 0 1532 222 37 11 chr3 93703684 93704036 -133820542 - MLT1A1 LTR MaLR -4 361 1 183 375 44 83 chr3 93704802 93705006 -133819572 - L2 LINE L2 -561 2753 2543 189 0 0 0 chr3 93705006 93705027 -133819551 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 183 375 44 83 chr3 93705027 93705414 -133819164 - L2 LINE L2 -771 2543 2185 213 315 135 0 chr3 93705467 93705578 -133819000 - L2 LINE L2 -1390 1924 1799 185 319 0 0 chr3 93705611 93705658 -133818920 - MER5B DNA MER1_type -60 118 72 2115 195 114 53 chr3 93705662 93706396 -133818182 + LTR1B LTR ERV1 1 979 -41 275 243 14 14 chr3 93706427 93706497 -133818081 - MER5B DNA MER1_type -108 70 1 2461 57 3 3 chr3 93706503 93706800 -133817778 - AluY SINE Alu -14 297 1 212 171 0 0 chr3 93706867 93706908 -133817670 + (TTA)n Simple_repeat Simple_repeat 2 42 0 707 158 8 38 chr3 93707308 93707441 -133817137 - FLAM_C SINE Alu -14 129 1 2681 159 94 11 chr3 93707477 93707998 -133816580 + MER34B LTR ERV1 2 565 0 218 175 0 0 chr3 93708435 93708475 -133816103 + (TTG)n Simple_repeat Simple_repeat 2 41 0 379 146 51 51 chr3 93709366 93709544 -133815034 + (TTATA)n Simple_repeat Simple_repeat 2 179 0 31 0 0 0 chr3 93709551 93709582 -133814996 + AT_rich Low_complexity Low_complexity 1 31 0 276 77 0 0 chr3 93710487 93710526 -133814052 + (GA)n Simple_repeat Simple_repeat 2 40 0 518 299 69 55 chr3 93710783 93711074 -133813504 - MLT1K LTR MaLR -142 446 152 2278 161 49 12 chr3 93711386 93711797 -133812781 - MSTB LTR MaLR 0 426 1 204 379 0 11 chr3 93711846 93711941 -133812637 - L2 LINE L2 -216 3056 2963 284 0 0 27 chr3 93712243 93712280 -133812298 + (TTA)n Simple_repeat Simple_repeat 2 37 0 2231 93 0 0 chr3 93712283 93712561 -133812017 - AluSc SINE Alu -31 278 1 369 93 0 0 chr3 93713315 93713369 -133811209 + (GGA)n Simple_repeat Simple_repeat 3 56 0 21 71 0 0 chr3 93713383 93713425 -133811153 + AT_rich Low_complexity Low_complexity 1 42 0 1162 206 54 7 chr3 93713785 93714101 -133810477 - MLT1A1 LTR MaLR 0 365 1 247 215 0 62 chr3 93714773 93714838 -133809740 - L2 LINE L2 -3 3310 3250 9854 221 34 23 chr3 93714973 93717543 -133807035 + L1M2b LINE L1 179 2719 -4489 3828 56 21 2 chr3 93717543 93718024 -133806554 - LTR2B LTR ERV1 0 490 1 9854 221 34 23 chr3 93718024 93720673 -133803905 + L1M2b LINE L1 2719 5435 -1773 2460 104 6 8 chr3 93922544 93922900 -133601678 + THE1A LTR MaLR 1 355 0 719 114 0 0 chr3 93923174 93923279 -133601299 + L1PA8 LINE L1 6066 6170 -2 959 151 9 3 chr3 93923386 93924628 -133599950 - BSR/Beta Satellite Satellite 0 1248 1 486 268 208 40 chr3 93925140 93925390 -133599188 + L1M4b LINE L1 644 935 -5924 226 205 0 0 chr3 93925666 93925705 -133598873 + L1M4b LINE L1 1178 1216 -5643 1710 218 14 8 chr3 93925839 93926202 -133598376 + MLT1A1 LTR MaLR 1 365 0 1084 258 53 71 chr3 93926286 93926843 -133597735 + L1M4b LINE L1 1205 1771 -5188 1861 153 0 10 chr3 93926843 93927131 -133597447 + AluSx SINE Alu 1 285 -27 1084 258 53 71 chr3 93927131 93927571 -133597007 + L1M4b LINE L1 1771 2165 -4794 225 65 0 0 chr3 93927571 93927602 -133596976 + (CAA)n Simple_repeat Simple_repeat 1 31 0 1084 258 53 71 chr3 93927602 93927744 -133596834 + L1M4b LINE L1 2165 2308 -4651 789 287 84 37 chr3 93927748 93928103 -133596475 + MLT1A2 LTR MaLR 1 372 -2 2136 218 6 12 chr3 93928107 93928593 -133595985 + MLT1A2-int LTR MaLR 5 487 -884 240 35 0 0 chr3 93928942 93928971 -133595607 + (CA)n Simple_repeat Simple_repeat 2 30 0 388 156 0 0 chr3 93929072 93929136 -133595442 - L1 LINE L1 -1037 5109 5046 5727 27 1 3 chr3 93929153 93929830 -133594748 - L1PA4 LINE L1 -5 6150 5475 1932 43 0 0 chr3 93929830 93930061 -133594517 - L1PA3 LINE L1 0 6155 5921 14211 39 0 0 chr3 93930061 93931824 -133592754 + L1P LINE L1 2114 3876 -2270 2013 175 28 36 chr3 93933771 93934332 -133590246 + MLT2A2 LTR ERVL 1 554 0 443 248 161 7 chr3 93934528 93934665 -133589913 - MER45A DNA AcHobo -20 158 1 666 257 93 22 chr3 93934672 93934898 -133589680 - LTR16A1 LTR ERVL -2 455 214 236 273 26 0 chr3 93934942 93935019 -133589559 - LTR16A1 LTR ERVL -378 79 1 442 243 29 15 chr3 93935917 93936053 -133588525 + L1MB7 LINE L1 6038 6175 -9 456 305 59 17 chr3 93936958 93937194 -133587384 - MLT1J1 LTR MaLR -172 274 29 1166 202 44 101 chr3 93938099 93938486 -133586092 + MLT1A1 LTR MaLR 1 365 0 1888 136 7 0 chr3 93938935 93939208 -133585370 - AluSq SINE Alu -36 277 3 1945 140 3 7 chr3 93939212 93939524 -133585054 - AluSx SINE Alu 0 311 1 303 292 80 7 chr3 93940581 93940718 -133583860 + L1MD3 LINE L1 7846 7992 -3 336 132 0 0 chr3 93940934 93940987 -133583591 - Alu SINE Alu -1 301 249 30 27 0 0 chr3 93941552 93941589 -133582989 + AT_rich Low_complexity Low_complexity 1 37 0 211 167 33 50 chr3 93942135 93942195 -133582383 + (TCTCTG)n Simple_repeat Simple_repeat 2 60 0 312 70 0 0 chr3 93942550 93942593 -133581985 + (TG)n Simple_repeat Simple_repeat 1 43 0 284 344 146 0 chr3 93942909 93943121 -133581457 - MIR SINE MIR -2 260 18 264 313 94 44 chr3 93943172 93943332 -133581246 - MIR SINE MIR -8 254 87 22 0 0 0 chr3 93944188 93944210 -133580368 + AT_rich Low_complexity Low_complexity 1 22 0 1696 203 0 3 chr3 93944271 93944582 -133579996 + AluJb SINE Alu 1 310 -2 257 170 75 0 chr3 93945564 93945617 -133578961 - MLT2B2 LTR ERVL 0 520 464 357 159 0 0 chr3 93945617 93945680 -133578898 + (TA)n Simple_repeat Simple_repeat 2 64 0 1666 208 74 46 chr3 93945681 93946142 -133578436 - MLT2B2 LTR ERVL -41 474 1 987 213 43 56 chr3 93946154 93946464 -133578114 - MLT1A1 LTR MaLR -60 314 4 708 251 35 143 chr3 93946964 93947427 -133577151 - LTR9 LTR ERV1 0 612 200 2117 99 3 7 chr3 93947465 93947767 -133576811 - AluSq SINE Alu -12 301 1 808 225 6 16 chr3 93947791 93947973 -133576605 - LTR9 LTR ERV1 -432 180 1 250 288 90 0 chr3 93948651 93948762 -133575816 - MERVL-B2 LTR ERVL -133 5352 5232 404 273 86 8 chr3 93948918 93949046 -133575532 - MERVL-B2 LTR ERVL -690 5074 4937 22 35 0 0 chr3 93949149 93949178 -133575400 + AT_rich Low_complexity Low_complexity 1 29 0 977 295 57 34 chr3 93949215 93949922 -133574656 - MERVL-B2 LTR ERVL -1142 4622 3933 222 37 0 0 chr3 93949922 93949949 -133574629 + (TA)n Simple_repeat Simple_repeat 1 27 0 977 295 57 34 chr3 93949949 93950662 -133573916 - MERVL-B2 LTR ERVL -1831 3933 3066 537 396 93 57 chr3 93951731 93952173 -133572405 - LTR46 LTR ERV1 -2 458 1 24 0 0 0 chr3 93952872 93952896 -133571682 + AT_rich Low_complexity Low_complexity 1 24 0 2164 105 0 36 chr3 93953168 93953474 -133571104 - AluSx SINE Alu -11 301 7 636 227 0 0 chr3 93953729 93953857 -133570721 - FLAM_A SINE Alu -9 133 6 248 367 17 17 chr3 93954189 93954309 -133570269 - MIR3 SINE MIR -38 170 51 224 293 0 0 chr3 93954692 93954750 -133569828 - MIR SINE MIR -11 251 194 251 330 135 48 chr3 93955404 93956025 -133568553 + L2 LINE L2 2592 3258 -55 1097 273 80 59 chr3 93956108 93956584 -133567994 + MLT1E LTR MaLR 90 575 -18 1941 164 77 35 chr3 93956584 93957099 -133567479 + MLT2A2 LTR ERVL 1 554 0 2089 95 103 8 chr3 93958322 93958689 -133565889 - LTR7 LTR ERV1 0 450 1 3672 116 4 14 chr3 93958689 93959252 -133565326 - HERVH LTR ERV1 0 7713 7157 2113 160 57 5 chr3 93959245 93959651 -133564927 - HERVH LTR ERV1 -1697 6016 5590 * 8743 112 4 47 chr3 93959642 93961038 -133563540 - HERVH LTR ERV1 -2564 5149 3813 2778 154 0 0 chr3 93961037 93961485 -133563093 - HERVH LTR ERV1 -4126 3587 3140 * 13135 135 2 23 chr3 93961464 93963635 -133560943 - HERVH LTR ERV1 -4718 2995 870 1428 248 87 30 chr3 93964073 93964512 -133560066 + MLT2B1 LTR ERVL 1 464 -56 330 300 42 0 chr3 93964543 93964663 -133559915 + L1M2 LINE L1 13 137 -6712 6478 254 33 11 chr3 93965114 93968038 -133556540 + L1PA13 LINE L1 1509 4503 -2294 23 0 0 0 chr3 93968040 93968063 -133556515 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 93968365 93968388 -133556190 + AT_rich Low_complexity Low_complexity 1 23 0 2411 81 0 0 chr3 93968472 93968767 -133555811 + AluY SINE Alu 1 295 -16 182 345 51 56 chr3 93969137 93969334 -133555244 + L2 LINE L2 2686 2881 -433 34 42 0 0 chr3 93969351 93969399 -133555179 + AT_rich Low_complexity Low_complexity 1 48 0 523 242 16 18 chr3 93969621 93969848 -133554730 + MER34 LTR ERV1 1 267 -377 313 242 50 26 chr3 93969880 93970011 -133554567 + LTR48 LTR ERV1 382 508 -136 274 218 59 50 chr3 93970013 93970114 -133554464 + LTR49 LTR ERV1 494 595 0 1333 263 37 6 chr3 93970939 93971293 -133553285 + MLT1A1 LTR MaLR 1 365 0 1062 278 76 90 chr3 93971473 93972316 -133552262 - L1MCb LINE L1 -5212 833 3 2106 126 3 25 chr3 93972466 93972784 -133551794 + AluSx SINE Alu 1 311 -1 463 280 45 55 chr3 93972877 93973298 -133551280 + L1MDb LINE L1 1056 1472 -5071 616 224 44 68 chr3 93973302 93973596 -133550982 + L1MDb LINE L1 1383 1669 -4871 1476 212 86 32 chr3 93973618 93974148 -133550430 + MLT2A2 LTR ERVL 1 546 -8 847 251 45 54 chr3 93974152 93974563 -133550015 + L1MDb LINE L1 1690 2063 -4477 307 198 58 23 chr3 93974622 93974708 -133549870 + L1MC4 LINE L1 6614 6702 -1340 30 27 0 0 chr3 93974934 93974971 -133549607 + AT_rich Low_complexity Low_complexity 1 37 0 301 154 70 49 chr3 93975041 93975184 -133549394 + (TTAA)n Simple_repeat Simple_repeat 3 148 0 562 276 49 12 chr3 93975190 93975436 -133549142 + L1MDb LINE L1 2829 3083 -3457 860 275 180 16 chr3 93975493 93975899 -133548679 + L1MDb LINE L1 3179 3517 -3023 2025 108 0 14 chr3 93975899 93976195 -133548383 + AluSc SINE Alu 1 292 -17 860 275 180 16 chr3 93976195 93976410 -133548168 + L1MDb LINE L1 3517 3902 -2638 30 45 0 0 chr3 93978102 93978146 -133546432 + AT_rich Low_complexity Low_complexity 1 44 0 2076 102 6 29 chr3 93978420 93978733 -133545845 - AluSx SINE Alu -6 306 1 228 272 120 0 chr3 93979366 93979458 -133545120 + Charlie8 DNA MER1_type 124 226 -2191 183 80 0 0 chr3 93980721 93980746 -133543832 + (T)n Simple_repeat Simple_repeat 1 25 0 342 344 98 8 chr3 93981537 93981659 -133542919 - L2 LINE L2 0 3272 3140 1357 206 58 30 chr3 93982279 93982644 -133541934 + THE1C LTR MaLR 1 375 0 221 344 160 20 chr3 93982702 93982946 -133541632 - L2 LINE L2 -559 2755 2478 805 144 25 74 chr3 93985730 93985932 -133538646 + L1MA8 LINE L1 6087 6278 -13 27 29 0 0 chr3 93986053 93986087 -133538491 + AT_rich Low_complexity Low_complexity 1 34 0 426 338 59 45 chr3 93986256 93986614 -133537964 - L3b LINE CR1 -87 1496 1134 2059 136 3 0 chr3 93986667 93986962 -133537616 + AluSx SINE Alu 1 296 -16 228 224 0 17 chr3 93987258 93987316 -133537262 + GA-rich Low_complexity Low_complexity 3 59 0 2155 252 52 42 chr3 93987826 93988782 -133535796 - L1ME1 LINE L1 -24 6142 5188 1422 249 67 46 chr3 93988995 93989472 -133535106 - MLT1D LTR MaLR -18 487 1 223 262 16 0 chr3 93989808 93989869 -133534709 + CT-rich Low_complexity Low_complexity 3 64 0 27 87 0 0 chr3 93990382 93990451 -133534127 + AT_rich Low_complexity Low_complexity 1 69 0 24 0 0 0 chr3 93991293 93991317 -133533261 + AT_rich Low_complexity Low_complexity 1 24 0 225 243 0 43 chr3 93992013 93992083 -133532495 + MIR SINE MIR 89 155 -107 219 204 0 0 chr3 93992942 93992991 -133531587 + GA-rich Low_complexity Low_complexity 2 50 0 1861 158 10 3 chr3 93993091 93993395 -133531183 + AluSx SINE Alu 5 310 -2 192 270 16 0 chr3 93994067 93994130 -133530448 + L2 LINE L2 1906 1969 -1345 422 314 199 25 chr3 93994727 93995128 -133529450 + L2 LINE L2 2238 2708 -606 542 301 138 0 chr3 93996239 93996442 -133528136 + MIR SINE MIR 4 234 -28 1350 276 14 0 chr3 93997223 93997586 -133526992 - HsTC2 DNA Tc2 -1076 822 455 770 311 134 18 chr3 93997884 93998280 -133526298 - MLT1J LTR MaLR -69 442 1 623 159 0 0 chr3 93998454 93998567 -133526011 - L1MA1 LINE L1 0 6302 6190 2025 217 75 7 chr3 93998606 93999043 -133525535 + MER70A LTR ERVL 6 472 0 203 298 0 0 chr3 93999058 93999115 -133525463 + L2 LINE L2 3251 3307 -6 622 212 151 60 chr3 93999464 93999894 -133524684 + L1MC5 LINE L1 7249 7717 -244 2586 263 48 16 chr3 93999905 94000608 -133523970 - ERVL-B1 LTR ERVL -5037 727 2 1704 239 106 6 chr3 94000609 94001082 -133523496 - MLT2B1 LTR ERVL 0 520 1 772 251 186 99 chr3 94001542 94002090 -133522488 + MLT1E1 LTR MaLR 1 567 -26 1405 251 30 6 chr3 94002245 94002580 -133521998 + MER2 DNA MER2_type 2 344 0 4054 242 34 31 chr3 94002604 94002765 -133521813 + L1M1 LINE L1 10 169 -7396 2359 39 0 0 chr3 94002765 94003044 -133521534 + AluY SINE Alu 1 279 -32 279 0 0 0 chr3 94003044 94003075 -133521503 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 4054 242 34 31 chr3 94003075 94004300 -133520278 + L1M1 LINE L1 169 1389 -6176 1337 222 14 25 chr3 94004300 94004584 -133519994 + AluJo SINE Alu 2 282 -30 180 0 0 0 chr3 94004587 94004607 -133519971 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 4054 242 34 31 chr3 94004607 94004657 -133519921 + L1M1 LINE L1 1390 2129 -5436 21 57 0 0 chr3 94004664 94004699 -133519879 + AT_rich Low_complexity Low_complexity 1 35 0 1684 177 7 7 chr3 94004797 94005102 -133519476 + AluSx SINE Alu 1 305 -7 542 261 62 36 chr3 94006683 94006878 -133517700 + MIR SINE MIR 20 219 -43 1606 194 3 0 chr3 94008677 94009022 -133515556 - AluJb SINE Alu 0 312 1 1481 204 43 123 chr3 94009117 94009716 -133514862 - L1MC3 LINE L1 -557 7228 6678 10061 211 33 90 chr3 94009758 94011723 -133512855 + L1MA4A LINE L1 2 2078 -4927 231 36 0 0 chr3 94011723 94011751 -133512827 + (CA)n Simple_repeat Simple_repeat 1 28 0 10061 211 33 90 chr3 94011751 94012082 -133512496 + L1MA4A LINE L1 2078 2426 -4579 279 0 0 0 chr3 94012082 94012113 -133512465 + (CA)n Simple_repeat Simple_repeat 2 32 0 10061 211 33 90 chr3 94012113 94012538 -133512040 + L1MA4A LINE L1 2426 2874 -4131 2507 56 0 0 chr3 94012538 94012844 -133511734 + AluY SINE Alu 1 306 -5 10061 211 33 90 chr3 94012844 94015861 -133508717 + L1MA4A LINE L1 2874 5459 -1546 1666 111 0 8 chr3 94015861 94016096 -133508482 - THE1B LTR MaLR 0 364 132 10061 211 33 90 chr3 94016096 94017555 -133507023 + L1MA4A LINE L1 5459 7000 -5 1395 163 23 8 chr3 94017557 94017815 -133506763 - L1MC3 LINE L1 -1132 6653 6392 * 1555 203 171 11 chr3 94017809 94017978 -133506600 + L1MC3 LINE L1 7261 7402 -383 1677 95 4 42 chr3 94017978 94018240 -133506338 + L1PA13 LINE L1 5912 6163 0 1555 203 171 11 chr3 94018240 94018503 -133506075 + L1MC3 LINE L1 7402 7762 -23 1559 237 66 86 chr3 94018957 94019398 -133505180 - MLT1E1 LTR MaLR 0 654 229 2394 174 17 2 chr3 94019398 94019818 -133504760 - MSTB LTR MaLR 0 426 1 1559 237 66 86 chr3 94019818 94020043 -133504535 - MLT1E1 LTR MaLR -425 229 1 309 354 6 37 chr3 94020148 94020309 -133504269 - MIR SINE MIR -93 169 14 3207 281 102 45 chr3 94020660 94022728 -133501850 - L1MC4a LINE L1 -120 7688 5504 2116 174 54 17 chr3 94022843 94023250 -133501328 - MSTB LTR MaLR -1 425 4 7363 209 52 11 chr3 94023259 94024839 -133499739 - MSTB-int LTR MaLR -6 1645 1 838 161 6 37 chr3 94024839 94025000 -133499578 - MSTB LTR MaLR 0 432 277 21 57 0 0 chr3 94025167 94025202 -133499376 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr3 94025956 94025980 -133498598 + AT_rich Low_complexity Low_complexity 1 24 0 321 88 0 35 chr3 94028762 94028819 -133495759 - L1PA15 LINE L1 -1 6815 6761 251 118 0 0 chr3 94028821 94028855 -133495723 + L1PA15 LINE L1 6056 6089 -76 10562 207 15 29 chr3 94028905 94032100 -133492478 - L1PA15 LINE L1 -76 6740 3481 3872 109 137 130 chr3 94032103 94033484 -133491094 - pTR5 LTR ERV1 0 2438 741 4660 253 32 7 chr3 94033484 94035052 -133489526 - L1PA15 LINE L1 -3314 3483 1889 5192 66 36 0 chr3 94035073 94035770 -133488808 - LTR30 LTR ERV1 0 722 1 6065 129 18 3 chr3 94035770 94036671 -133487907 - HERV30 LTR ERV1 0 8257 7344 * 25836 93 3 3 chr3 94036664 94040127 -133484451 - HERV30 LTR ERV1 -4795 3462 1 5056 70 39 6 chr3 94040127 94040826 -133483752 - LTR30 LTR ERV1 0 722 1 703 270 0 0 chr3 94040826 94040978 -133483600 - L1PA15 LINE L1 -4926 1861 1710 28 61 0 0 chr3 94041078 94041127 -133483451 + AT_rich Low_complexity Low_complexity 1 49 0 425 337 75 47 chr3 94041751 94042110 -133482468 - L2 LINE L2 -799 2515 2147 231 239 149 0 chr3 94042121 94042188 -133482390 + Tigger7 DNA MER2_type 2410 2486 -1 1109 200 36 13 chr3 94042976 94043324 -133481254 + LTR24C LTR ERV1 233 635 0 1606 201 34 34 chr3 94043583 94043996 -133480582 + L1MA9 LINE L1 5900 6312 0 423 287 48 71 chr3 94044063 94044302 -133480276 + L1MEc LINE L1 959 1202 -5194 2100 142 0 0 chr3 94044302 94044612 -133479966 + AluSx SINE Alu 3 312 0 423 287 48 71 chr3 94044612 94045073 -133479505 + L1MEc LINE L1 1202 1643 -4753 * 701 338 30 16 chr3 94045043 94045413 -133479165 + L1MEc LINE L1 10 384 -6012 248 353 96 24 chr3 94045449 94045698 -133478880 - L2 LINE L2 -737 2577 2311 2408 133 17 8 chr3 94045722 94046083 -133478495 + THE1B LTR MaLR 1 364 0 794 274 68 53 chr3 94046147 94046716 -133477862 + L1M4 LINE L1 3322 3899 -2247 1143 121 11 6 chr3 94047548 94047722 -133476856 - AluSx SINE Alu -125 187 13 1269 165 107 74 chr3 94048120 94048298 -133476280 + THE1C LTR MaLR 1 172 -203 387 0 0 0 chr3 94048298 94048341 -133476237 + (TC)n Simple_repeat Simple_repeat 1 43 0 1269 165 107 74 chr3 94048341 94048525 -133476053 + THE1C LTR MaLR 172 375 0 307 317 59 38 chr3 94048525 94048711 -133475867 + L1ME LINE L1 5646 5835 -286 845 258 85 14 chr3 94049086 94049381 -133475197 - MSTD LTR MaLR -12 353 41 22 0 0 0 chr3 94050420 94050442 -133474136 + AT_rich Low_complexity Low_complexity 1 22 0 2100 156 46 43 chr3 94051018 94051434 -133473144 + MSTB1 LTR MaLR 1 417 -15 5943 169 28 53 chr3 94051518 94052751 -133471827 - Tigger2 DNA MER2_type -1 2717 1516 608 238 0 35 chr3 94052751 94052894 -133471684 + AluJb SINE Alu 153 290 -22 8236 177 21 5 chr3 94052922 94054421 -133470157 - Tigger2 DNA MER2_type -1196 1522 1 1035 129 181 174 chr3 94054498 94054923 -133469655 + MSTA LTR MaLR 1 428 0 7976 163 45 40 chr3 94054925 94056493 -133468085 + MSTA-int LTR MaLR 3 1579 -1 1599 156 207 11 chr3 94056494 94056852 -133467726 + MSTA LTR MaLR 1 428 0 2316 79 0 25 chr3 94059922 94060239 -133464339 + AluY SINE Alu 1 309 -2 2498 43 0 10 chr3 94060885 94061186 -133463392 - AluY SINE Alu -11 300 3 544 328 35 37 chr3 94061798 94062283 -133462295 + L1ME1 LINE L1 31 514 -5882 686 57 0 0 chr3 94062310 94062398 -133462180 - AluY SINE Alu -8 303 216 370 329 48 35 chr3 94062461 94062692 -133461886 + L1ME1 LINE L1 621 854 -5542 2510 287 86 68 chr3 94062798 94064498 -133460080 + L1ME1 LINE L1 2945 4698 -1517 5413 32 1 0 chr3 94064498 94065146 -133459432 + L1PA4 LINE L1 5507 6155 0 2510 287 86 68 chr3 94065146 94065748 -133458830 + L1ME1 LINE L1 4698 5288 -927 405 0 0 0 chr3 94065764 94065809 -133458769 + (CA)n Simple_repeat Simple_repeat 1 45 0 1363 191 96 62 chr3 94065809 94066196 -133458382 - MLT2D LTR ERVL -14 400 1 942 261 55 33 chr3 94066197 94066592 -133457986 + L1ME1 LINE L1 5305 5707 -528 4568 169 46 6 chr3 94066597 94067488 -133457090 + L1PA16 LINE L1 5230 6157 -9 1039 238 53 92 chr3 94067509 94067982 -133456596 + L1ME1 LINE L1 5756 6206 -27 21 0 0 0 chr3 94069792 94069813 -133454765 + AT_rich Low_complexity Low_complexity 1 21 0 405 271 99 42 chr3 94070509 94070859 -133453719 - L1ME3A LINE L1 -134 6036 5665 22 0 0 0 chr3 94071159 94071181 -133453397 + AT_rich Low_complexity Low_complexity 1 22 0 1229 312 28 19 chr3 94072115 94072650 -133451928 - MLT1F LTR MaLR -2 540 1 2106 178 101 25 chr3 94072668 94072719 -133451859 - MLT2B2 LTR ERVL 0 515 469 498 17 0 0 chr3 94072719 94072778 -133451800 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 2106 178 101 25 chr3 94072778 94073203 -133451375 - MLT2B2 LTR ERVL -46 469 3 1786 165 42 9 chr3 94073332 94073666 -133450912 + MER7A DNA MER2_type 2 344 -2 2211 164 20 12 chr3 94075227 94075787 -133448791 + L1PBa LINE L1 2382 3006 -3856 * 2775 217 7 37 chr3 94075784 94076535 -133448043 + L1 LINE L1 4195 4922 -1224 253 313 166 6 chr3 94126685 94126848 -133397730 - MIR SINE MIR -7 255 67 2308 112 0 0 chr3 94127930 94128243 -133396335 - AluSp SINE Alu 0 313 1 469 301 42 14 chr3 94128260 94128403 -133396175 + MIR SINE MIR 96 242 -20 195 100 0 0 chr3 94128607 94128637 -133395941 + (CA)n Simple_repeat Simple_repeat 1 30 0 21 36 0 0 chr3 94128839 94128867 -133395711 + AT_rich Low_complexity Low_complexity 1 28 0 261 70 53 35 chr3 94128980 94129037 -133395541 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 1947 109 11 0 chr3 94129443 94129744 -133394834 + AluSc SINE Alu 14 317 0 444 255 29 101 chr3 94129748 94129956 -133394622 + MLT1E2 LTR MaLR 207 399 -227 3676 31 7 7 chr3 94129956 94130448 -133394130 + L1PA4 LINE L1 5702 6193 0 1212 130 5 0 chr3 94130600 94130784 -133393794 + AluSp SINE Alu 116 300 -13 188 390 18 18 chr3 94130896 94131065 -133393513 - L2 LINE L2 -1270 2044 1876 1728 216 3 11 chr3 94131067 94131432 -133393146 + MLT1A1 LTR MaLR 4 365 0 1169 245 26 23 chr3 94131454 94131764 -133392814 + MLT2C1 LTR ERVL 1 311 -86 324 0 0 0 chr3 94131807 94131843 -133392735 + (CA)n Simple_repeat Simple_repeat 2 37 0 2124 201 10 2 chr3 94131859 94132272 -133392306 + Tigger3b DNA MER2_type 1 416 -815 260 27 27 0 chr3 94132477 94132514 -133392064 + (TG)n Simple_repeat Simple_repeat 2 39 0 328 389 32 23 chr3 94132521 94132737 -133391841 - L2 LINE L2 -2897 417 200 21 36 0 0 chr3 94132926 94132954 -133391624 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 94133290 94133318 -133391260 + AT_rich Low_complexity Low_complexity 1 28 0 729 50 20 0 chr3 94134441 94134540 -133390038 - AluY SINE Alu -14 297 197 1703 75 38 0 chr3 94135427 94135666 -133388912 + L1MA1 LINE L1 6055 6302 0 412 186 0 0 chr3 94136171 94136241 -133388337 + MLT2B2 LTR ERVL 1 70 -450 231 156 62 0 chr3 94136312 94136376 -133388202 + (TA)n Simple_repeat Simple_repeat 2 69 0 1712 163 96 14 chr3 94136378 94136722 -133387856 + L1PB4 LINE L1 5776 6147 -9 1363 207 12 62 chr3 94136729 94137067 -133387511 + MLT2B2 LTR ERVL 60 380 -135 322 361 133 22 chr3 94137145 94137655 -133386923 - L2 LINE L2 -574 2740 2174 1117 199 24 0 chr3 94137763 94137969 -133386609 + Tigger3(Golem) DNA MER2_type 2817 3027 -2 354 61 0 0 chr3 94137981 94138030 -133386548 + (CA)n Simple_repeat Simple_repeat 2 50 0 189 369 10 87 chr3 94138300 94138495 -133386083 - L2 LINE L2 -1830 1484 1305 261 228 283 18 chr3 94139899 94140118 -133384460 + L1MC4a LINE L1 5634 5910 -1898 1828 175 9 15 chr3 94140123 94140461 -133384117 + MER2 DNA MER2_type 2 337 -8 27 0 0 0 chr3 94142375 94142402 -133382176 + AT_rich Low_complexity Low_complexity 1 27 0 291 241 38 25 chr3 94142730 94142809 -133381769 + MER20 DNA MER1_type 1 80 -139 1487 236 33 64 chr3 94142824 94143296 -133381282 + MER31B LTR ERV1 1 508 -6 546 203 85 0 chr3 94143333 94143451 -133381127 + MER20 DNA MER1_type 91 218 -1 245 247 156 26 chr3 94144614 94144691 -133379887 + LTR33 LTR ERVL 368 454 -67 27 29 0 0 chr3 94145445 94145479 -133379099 + AT_rich Low_complexity Low_complexity 1 34 0 274 278 9 28 chr3 94145913 94146021 -133378557 + LTR67 LTR ERVL 435 540 -17 226 219 47 31 chr3 94148279 94148343 -133376235 - L2 LINE L2 -8 3264 3200 425 96 0 27 chr3 94148635 94148708 -133375870 + L1PA8 LINE L1 6097 6167 -5 2151 114 3 0 chr3 94149008 94149298 -133375280 - AluSg SINE Alu -19 291 1 3904 102 10 82 chr3 94149629 94149750 -133374828 + MER4A LTR ERV1 2 130 -534 486 0 0 0 chr3 94149750 94149804 -133374774 + (TAAA)n Simple_repeat Simple_repeat 2 55 0 3904 102 10 82 chr3 94149804 94150397 -133374181 + MER4A LTR ERV1 130 664 0 21 0 0 0 chr3 94152741 94152762 -133371816 + AT_rich Low_complexity Low_complexity 1 21 0 3671 206 34 107 chr3 94152918 94153049 -133371529 - L1MA9 LINE L1 -38 6274 6135 507 45 0 0 chr3 94153049 94153115 -133371463 + (TG)n Simple_repeat Simple_repeat 2 67 0 3671 206 34 107 chr3 94153115 94154446 -133370132 - L1MA9 LINE L1 -177 6135 4953 2009 131 0 0 chr3 94154446 94154736 -133369842 + AluSx SINE Alu 1 290 -22 3671 206 34 107 chr3 94154736 94154932 -133369646 - L1MA9 LINE L1 -1359 4953 4744 27 49 0 0 chr3 94155413 94155454 -133369124 + AT_rich Low_complexity Low_complexity 1 41 0 18694 162 11 7 chr3 94155794 94159157 -133365421 + L1M2 LINE L1 2428 5901 -947 1066 112 17 11 chr3 94159159 94159337 -133365241 + L1PA10 LINE L1 5985 6163 -5 1278 243 24 0 chr3 94159457 94159753 -133364825 - AluJb SINE Alu -9 303 1 1834 144 32 0 chr3 94159846 94160176 -133364402 + AluSx SINE Alu 1 312 0 632 191 21 101 chr3 94160251 94160396 -133364182 - L1ME LINE L1 -417 5749 5619 1479 180 67 0 chr3 94160396 94160691 -133363887 - AluJb SINE Alu 0 321 10 632 191 21 101 chr3 94160691 94160732 -133363846 - L1ME LINE L1 -547 5619 5576 527 167 31 7 chr3 94160737 94160860 -133363718 - MSTB1 LTR MaLR 0 432 267 37 0 0 0 chr3 94161331 94161368 -133363210 + AT_rich Low_complexity Low_complexity 1 37 0 250 384 35 20 chr3 94161537 94161735 -133362843 - L2 LINE L2 -955 2359 2159 2025 118 0 4 chr3 94162757 94163066 -133361512 + AluSg1 SINE Alu 1 308 0 22 0 0 0 chr3 94163810 94163832 -133360746 + AT_rich Low_complexity Low_complexity 1 22 0 299 292 18 64 chr3 94163957 94164128 -133360450 - MIR SINE MIR -50 212 50 210 37 0 0 chr3 94164264 94164291 -133360287 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1420 84 21 5 chr3 94164293 94164483 -133360095 - AluSc SINE Alu -31 278 86 288 298 0 19 chr3 94164781 94164885 -133359693 - MLT1L LTR MaLR -348 267 166 21 89 0 0 chr3 94166070 94166126 -133358452 + AT_rich Low_complexity Low_complexity 1 56 0 513 348 56 76 chr3 94166700 94167412 -133357166 + L1MEd LINE L1 326 1023 -5096 2465 171 25 21 chr3 94167970 94168443 -133356135 + MER50 LTR ERV1 1 475 -259 1282 209 0 39 chr3 94168439 94168722 -133355856 + MER50 LTR ERV1 440 711 -23 * 1267 218 24 16 chr3 94168727 94168979 -133355599 + MLT1B LTR MaLR 137 390 0 1586 132 28 20 chr3 94170026 94170341 -133354237 + THE1C LTR MaLR 1 373 -2 270 316 0 58 chr3 94170353 94170508 -133354070 + ERVL LTR ERVL 4750 4895 -869 946 241 0 31 chr3 94170511 94170739 -133353839 + MER58A DNA MER1_type 3 223 -1 266 306 37 31 chr3 94171054 94171215 -133353363 + ERVL LTR ERVL 5184 5344 -141 380 345 41 0 chr3 94171827 94171972 -133352606 + LTR67 LTR ERVL 113 263 -294 252 149 0 0 chr3 94172880 94172927 -133351651 + (TG)n Simple_repeat Simple_repeat 2 48 0 23 0 0 0 chr3 94172993 94173016 -133351562 + AT_rich Low_complexity Low_complexity 1 23 0 1497 214 3 13 chr3 94173080 94173388 -133351190 - AluJo SINE Alu -7 305 1 22 56 0 0 chr3 94173502 94173538 -133351040 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr3 94173581 94173612 -133350966 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr3 94174399 94174423 -133350155 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr3 94174457 94174481 -133350097 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1021 205 27 126 chr3 94174566 94174615 -133349963 - MLT1A1 LTR MaLR 0 365 313 1601 117 30 0 chr3 94174615 94174846 -133349732 - AluSg1 SINE Alu -16 293 56 1021 205 27 126 chr3 94174846 94175201 -133349377 - MLT1A1 LTR MaLR -52 313 1 941 253 48 0 chr3 94175917 94176166 -133348412 + LTR43 LTR ERV1 176 436 -166 226 87 43 0 chr3 94176287 94176333 -133348245 + (CAA)n Simple_repeat Simple_repeat 2 49 0 771 235 72 66 chr3 94176789 94177108 -133347470 + MLT1C LTR MaLR 53 373 -94 39 0 0 0 chr3 94177254 94177293 -133347285 + AT_rich Low_complexity Low_complexity 1 39 0 262 75 25 0 chr3 94177638 94177678 -133346900 - AluSc SINE Alu -72 227 187 24 0 0 0 chr3 94177909 94177933 -133346645 + AT_rich Low_complexity Low_complexity 1 24 0 1129 189 0 5 chr3 94178030 94178221 -133346357 - AluSx SINE Alu -122 190 1 21 0 0 0 chr3 94178582 94178603 -133345975 + AT_rich Low_complexity Low_complexity 1 21 0 572 333 29 0 chr3 94178860 94179064 -133345514 + MIR SINE MIR 11 220 -42 39 22 0 0 chr3 94179540 94179586 -133344992 + AT_rich Low_complexity Low_complexity 1 46 0 583 235 60 7 chr3 94179801 94179950 -133344628 + L1ME1 LINE L1 6002 6158 -8 1671 178 7 3 chr3 94181178 94181471 -133343107 - AluJo SINE Alu -6 306 13 405 0 0 0 chr3 94182139 94182184 -133342394 + (CA)n Simple_repeat Simple_repeat 2 46 0 26 0 0 0 chr3 94182700 94182726 -133341852 + AT_rich Low_complexity Low_complexity 1 26 0 29 28 0 0 chr3 94182745 94182781 -133341797 + AT_rich Low_complexity Low_complexity 1 36 0 1258 177 0 4 chr3 94183448 94183674 -133340904 - AluSx SINE Alu -87 225 1 401 236 27 27 chr3 94183712 94183860 -133340718 - L1M4 LINE L1 -3478 2668 2521 261 70 53 35 chr3 94183932 94183989 -133340589 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 21 36 0 0 chr3 94184102 94184130 -133340448 + AT_rich Low_complexity Low_complexity 1 28 0 195 100 0 0 chr3 94184332 94184362 -133340216 + (TG)n Simple_repeat Simple_repeat 1 30 0 505 339 38 30 chr3 94184566 94184726 -133339852 - MIR SINE MIR -20 242 78 1445 236 0 0 chr3 94184726 94185039 -133339539 + AluSp SINE Alu 1 313 0 505 339 38 30 chr3 94185039 94185114 -133339464 - MIR SINE MIR -184 78 5 26 30 0 0 chr3 94185655 94185688 -133338890 + AT_rich Low_complexity Low_complexity 1 33 0 351 0 0 0 chr3 94188182 94188221 -133336357 + (TG)n Simple_repeat Simple_repeat 2 40 0 657 197 0 16 chr3 94188350 94188472 -133336106 + AluJb SINE Alu 192 311 -1 188 217 50 50 chr3 94189143 94189203 -133335375 + MIR SINE MIR 94 153 -109 527 214 186 7 chr3 94190441 94190586 -133333992 - MER58B DNA MER1_type -1 340 170 23 0 0 0 chr3 94190874 94190897 -133333681 + AT_rich Low_complexity Low_complexity 1 23 0 2086 89 30 20 chr3 94190916 94191219 -133333359 - AluSg SINE Alu -4 306 1 21 0 0 0 chr3 94192180 94192201 -133332377 + AT_rich Low_complexity Low_complexity 1 21 0 661 156 55 0 chr3 94192552 94192680 -133331898 - L1PA15 LINE L1 -9 6156 6022 324 259 224 11 chr3 94193058 94193232 -133331346 - L2 LINE L2 -901 2413 2203 22 0 0 0 chr3 94193477 94193499 -133331079 + AT_rich Low_complexity Low_complexity 1 22 0 378 16 16 33 chr3 94193593 94193654 -133330924 + (TTTA)n Simple_repeat Simple_repeat 2 61 0 1809 145 11 0 chr3 94193658 94193940 -133330638 - AluSq SINE Alu -28 285 1 22 70 0 0 chr3 94194025 94194068 -133330510 + AT_rich Low_complexity Low_complexity 1 43 0 195 322 17 0 chr3 94194724 94194783 -133329795 + MIR SINE MIR 189 248 -14 40 21 0 0 chr3 94194791 94194838 -133329740 + AT_rich Low_complexity Low_complexity 1 47 0 24 0 0 0 chr3 94195773 94195797 -133328781 + AT_rich Low_complexity Low_complexity 1 24 0 224 244 0 0 chr3 94196228 94196269 -133328309 + L2 LINE L2 3241 3281 -32 22 0 0 0 chr3 94196344 94196366 -133328212 + AT_rich Low_complexity Low_complexity 1 22 0 1250 145 83 17 chr3 94196727 94197024 -133327554 + THE1B LTR MaLR 1 364 0 1142 172 69 140 chr3 94197177 94197584 -133326994 + MER51A LTR ERV1 257 634 0 377 279 135 33 chr3 94197786 94198318 -133326260 + L1ME LINE L1 786 1368 -4712 456 283 44 13 chr3 94198957 94199116 -133325462 - L1ME LINE L1 -5880 190 27 222 237 34 17 chr3 94199782 94199841 -133324737 + L2 LINE L2 3213 3272 0 22 70 0 0 chr3 94201207 94201250 -133323328 + AT_rich Low_complexity Low_complexity 1 43 0 2179 98 3 0 chr3 94201333 94201629 -133322949 + AluSg SINE Alu 1 297 -13 397 338 67 49 chr3 94201924 94202312 -133322266 - L1MEc LINE L1 -2634 3581 3187 389 304 89 30 chr3 94202622 94202984 -133321594 - L1MEc LINE L1 -3965 2273 1901 718 194 25 12 chr3 94203576 94203736 -133320842 - MER96B DNA MER1_type? -245 172 11 22 56 0 0 chr3 94203832 94203868 -133320710 + AT_rich Low_complexity Low_complexity 1 36 0 288 0 0 0 chr3 94203933 94203965 -133320613 + (TTTTG)n Simple_repeat Simple_repeat 2 33 0 26 30 0 0 chr3 94204246 94204279 -133320299 + AT_rich Low_complexity Low_complexity 1 33 0 2339 52 0 26 chr3 94204508 94204814 -133319764 - AluY SINE Alu -13 298 1 22 56 0 0 chr3 94205949 94205985 -133318593 + AT_rich Low_complexity Low_complexity 1 36 0 1238 269 20 20 chr3 94206109 94206563 -133318015 + L1MC2 LINE L1 4212 4665 -1481 4492 194 84 6 chr3 94206594 94207566 -133317012 + L1MC2 LINE L1 5273 6320 -24 209 93 47 23 chr3 94207578 94207621 -133316957 + A-rich Low_complexity Low_complexity 2 45 0 632 329 64 59 chr3 94208147 94208585 -133315993 + L3 LINE CR1 19 458 -1119 242 294 18 83 chr3 94208702 94208811 -133315767 - MER5A DNA MER1_type -1 188 87 765 281 118 3 chr3 94209057 94209353 -133315225 + L2 LINE L2 2672 3005 -308 373 226 86 11 chr3 94209386 94209479 -133315099 + L2 LINE L2 3214 3313 0 3189 213 43 57 chr3 94209877 94211099 -133313479 + L1MB7 LINE L1 4901 6112 -72 928 114 0 0 chr3 94211099 94211230 -133313348 - FLAM_C SINE Alu -2 131 1 3189 213 43 57 chr3 94211230 94211294 -133313284 + L1MB7 LINE L1 6112 6175 -9 21 36 0 0 chr3 94212208 94212236 -133312342 + AT_rich Low_complexity Low_complexity 1 28 0 34 24 0 0 chr3 94212259 94212300 -133312278 + AT_rich Low_complexity Low_complexity 1 41 0 45 45 0 0 chr3 94212498 94212564 -133312014 + AT_rich Low_complexity Low_complexity 1 66 0 1509 181 11 3 chr3 94212963 94213290 -133311288 + AluJo SINE Alu 5 312 0 644 259 42 0 chr3 94213518 94213684 -133310894 + MER20 DNA MER1_type 42 214 -5 453 267 12 43 chr3 94213933 94214094 -133310484 + L2 LINE L2 2362 2517 -797 196 312 83 103 chr3 94214192 94214445 -133310133 + L2 LINE L2 2534 2781 -533 2688 183 21 14 chr3 94214448 94215007 -133309571 + L1MC1 LINE L1 5343 5905 -439 1637 171 84 3 chr3 94215014 94215348 -133309230 - MER46B DNA MER2_type 0 236 1 1520 209 72 14 chr3 94215349 94215708 -133308870 - MLT1B LTR MaLR -6 384 5 2098 210 9 0 chr3 94215712 94216141 -133308437 + L1MC1 LINE L1 5899 6331 -2 1311 229 44 71 chr3 94216213 94216690 -133307888 - MLT1C LTR MaLR -3 464 1 421 318 144 42 chr3 94216691 94216979 -133307599 + L2 LINE L2 2785 3092 -221 1233 166 4 8 chr3 94218325 94218560 -133306018 + L1MA4 LINE L1 6066 6299 -1 57 47 0 0 chr3 94219846 94219931 -133304647 + AT_rich Low_complexity Low_complexity 1 85 0 22 0 0 0 chr3 94220092 94220114 -133304464 + AT_rich Low_complexity Low_complexity 1 22 0 242 328 0 0 chr3 94220489 94220547 -133304031 + L2 LINE L2 3205 3262 -10 264 273 116 33 chr3 94220610 94220731 -133303847 + MIR SINE MIR 16 146 -62 434 299 52 0 chr3 94221166 94221320 -133303258 + MIR SINE MIR 82 243 -19 4218 62 4 11 chr3 94221463 94221994 -133302584 - SVA Other Other 0 1386 860 28 0 0 0 chr3 94222135 94222163 -133302415 + AT_rich Low_complexity Low_complexity 1 28 0 684 206 0 0 chr3 94222321 94222452 -133302126 - FRAM SINE Alu -5 171 41 22 70 0 0 chr3 94222489 94222532 -133302046 + AT_rich Low_complexity Low_complexity 1 43 0 1354 192 21 59 chr3 94222705 94222852 -133301726 + MLT1A1 LTR MaLR 11 162 -305 1869 153 0 0 chr3 94222852 94223155 -133301423 + AluSx SINE Alu 1 303 0 1354 192 21 59 chr3 94223155 94223339 -133301239 + MLT1A1 LTR MaLR 162 431 -36 26 30 0 0 chr3 94224488 94224521 -133300057 + AT_rich Low_complexity Low_complexity 1 33 0 307 237 45 181 chr3 94224558 94224845 -133299733 + MIR SINE MIR 12 259 -3 471 112 34 22 chr3 94225094 94225183 -133299395 - MSTB1 LTR MaLR -342 90 1 1188 133 19 98 chr3 94225623 94225879 -133298699 + Tigger2a DNA MER2_type 1 236 -198 29 28 0 0 chr3 94225879 94225915 -133298663 + AT_rich Low_complexity Low_complexity 1 36 0 * 216 100 0 25 chr3 94225880 94225920 -133298658 + (TTTTTA)n Simple_repeat Simple_repeat 2 40 0 2188 133 5 24 chr3 94225915 94226292 -133298286 - L1PB1 LINE L1 0 6151 5782 406 16 32 32 chr3 94226307 94226370 -133298208 + (TCTA)n Simple_repeat Simple_repeat 3 65 0 6025 176 22 33 chr3 94226372 94226457 -133298121 - L1PB1 LINE L1 -314 6553 6469 451 66 26 0 chr3 94226457 94226533 -133298045 + (TCTA)n Simple_repeat Simple_repeat 1 78 0 180 0 0 0 chr3 94226532 94226552 -133298026 + (CA)n Simple_repeat Simple_repeat 2 21 0 * 6025 176 22 33 chr3 94226533 94228403 -133296175 - L1PB1 LINE L1 -398 6469 4642 2833 251 71 12 chr3 94228414 94229397 -133295181 - L1PB1 LINE L1 -5817 1046 6 1214 153 35 0 chr3 94229399 94229602 -133294976 + Tigger2a DNA MER2_type 225 434 0 22 70 0 0 chr3 94231105 94231148 -133293430 + AT_rich Low_complexity Low_complexity 1 43 0 285 291 12 23 chr3 94232195 94232281 -133292297 - MIR SINE MIR -65 197 113 215 31 31 0 chr3 94232281 94232313 -133292265 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 894 132 5 74 chr3 94232444 94232634 -133291944 - Tigger1 DNA MER2_type -1773 645 469 1340 185 4 33 chr3 94232634 94232904 -133291674 + AluJb SINE Alu 33 294 -18 2542 179 15 19 chr3 94232914 94233389 -133291189 - Tigger1 DNA MER2_type -1945 473 1 580 330 78 29 chr3 94233620 94233929 -133290649 + L2 LINE L2 1815 2138 -1176 4413 211 21 15 chr3 94234117 94234634 -133289944 - L1MA9 LINE L1 0 6312 5799 180 0 0 0 chr3 94234634 94234654 -133289924 + (TA)n Simple_repeat Simple_repeat 1 20 0 4413 211 21 15 chr3 94234654 94235177 -133289401 - L1MA9 LINE L1 -513 5799 5261 184 200 0 0 chr3 94235972 94236007 -133288571 + MIR SINE MIR 216 250 -12 211 113 81 0 chr3 94236120 94236182 -133288396 + (TA)n Simple_repeat Simple_repeat 1 67 0 225 356 128 20 chr3 94237763 94237912 -133286666 + MIR3 SINE MIR 40 204 -4 819 316 26 36 chr3 94238302 94238771 -133285807 - LTR16B LTR ERVL 0 464 1 186 325 72 0 chr3 94239031 94239114 -133285464 - MIR SINE MIR -10 252 164 24 0 0 0 chr3 94239671 94239695 -133284883 + AT_rich Low_complexity Low_complexity 1 24 0 357 125 0 0 chr3 94239747 94239795 -133284783 - MER8 DNA MER2_type 0 239 192 5927 179 113 42 chr3 94239796 94241250 -133283328 - MER52A LTR ERV1 -2 1753 197 225 280 0 0 chr3 94241239 94241289 -133283289 - MER52C LTR ERV1 -1196 82 33 * 998 124 57 23 chr3 94241724 94241901 -133282677 + Tigger2 DNA MER2_type 2280 2462 -256 22 56 0 0 chr3 94241955 94241991 -133282587 + AT_rich Low_complexity Low_complexity 1 36 0 23 54 0 0 chr3 94242184 94242221 -133282357 + AT_rich Low_complexity Low_complexity 1 37 0 357 366 37 12 chr3 94242432 94242596 -133281982 + MIR SINE MIR 92 259 -3 1895 58 4 0 chr3 94242719 94242961 -133281617 + L1PA7 LINE L1 5912 6154 0 343 187 19 65 chr3 94245339 94245395 -133279183 + MLT1J LTR MaLR 115 165 -346 972 205 104 41 chr3 94245395 94245712 -133278866 + MER44D DNA MER2_type 2 608 -1 343 187 19 65 chr3 94245712 94245762 -133278816 + MLT1J LTR MaLR 165 216 -295 8571 84 2 0 chr3 94245890 94247074 -133277504 - L1P LINE L1 -1383 4763 3577 1105 52 0 0 chr3 94247074 94247238 -133277340 + L1PA7 LINE L1 6002 6167 0 1837 129 7 7 chr3 94247440 94247757 -133276821 + AluSx SINE Alu 4 320 0 315 266 62 18 chr3 94247927 94248040 -133276538 - MLT1J LTR MaLR -277 234 117 326 318 5 64 chr3 94248122 94248213 -133276365 - L1M4 LINE L1 -748 5398 5303 1732 177 3 16 chr3 94248213 94248529 -133276049 - AluSx SINE Alu 0 312 1 326 318 5 64 chr3 94248529 94248657 -133275921 - L1M4 LINE L1 -843 5303 5192 1793 216 44 18 chr3 94248806 94249260 -133275318 - MER31B LTR ERV1 0 466 1 23 86 0 0 chr3 94250949 94251007 -133273571 + AT_rich Low_complexity Low_complexity 1 58 0 982 251 71 22 chr3 94251113 94251436 -133273142 + MER2 DNA MER2_type 7 345 0 225 0 0 0 chr3 94251439 94251464 -133273114 + (CA)n Simple_repeat Simple_repeat 2 26 0 232 286 77 11 chr3 94251694 94251785 -133272793 + MER117 DNA MER1_type 31 127 -70 195 200 0 89 chr3 94252028 94252073 -133272505 + L2 LINE L2 3231 3271 -1 1737 127 80 0 chr3 94253207 94253483 -133271095 + AluY SINE Alu 3 300 -11 717 233 53 56 chr3 94253761 94254027 -133270551 - MLT1C LTR MaLR -195 272 8 383 402 34 17 chr3 94254054 94254345 -133270233 + L1MEd LINE L1 466 761 -5358 2630 250 84 81 chr3 94254345 94255560 -133269018 - MER21-int LTR ERV1 -1354 4759 1673 1022 309 36 26 chr3 94255645 94256066 -133268512 - MER21-int LTR ERV1 -2554 1637 1213 612 284 11 17 chr3 94256116 94256292 -133268286 - MER21-int LTR ERV1 -3760 431 257 180 111 0 0 chr3 94256292 94256319 -133268259 + (TTTC)n Simple_repeat Simple_repeat 3 29 0 797 238 34 21 chr3 94256319 94256554 -133268024 - MER21-int LTR ERV1 -3924 267 30 273 277 264 45 chr3 94256962 94257182 -133267396 - L2 LINE L2 -972 2342 2075 1636 125 31 146 chr3 94257334 94257758 -133266820 + THE1C LTR MaLR 1 375 0 924 228 34 55 chr3 94257863 94258172 -133266406 - MLT1C LTR MaLR 0 412 173 22 35 0 0 chr3 94258173 94258202 -133266376 + AT_rich Low_complexity Low_complexity 1 29 0 1101 241 28 24 chr3 94258211 94258460 -133266118 - AluJo SINE Alu -62 250 1 873 153 57 6 chr3 94258460 94258636 -133265942 - MLT1C LTR MaLR -282 185 1 1346 167 73 17 chr3 94258669 94258969 -133265609 - MER33 DNA MER1_type 0 324 8 1069 220 23 81 chr3 94259279 94259624 -133264954 - MLT1D LTR MaLR 0 505 181 436 155 10 19 chr3 94259848 94259951 -133264627 + L1MA4 LINE L1 6197 6298 -2 21 0 0 0 chr3 94260375 94260396 -133264182 + AT_rich Low_complexity Low_complexity 1 21 0 908 177 39 6 chr3 94260554 94260735 -133263843 - MLT1D LTR MaLR -314 191 5 31 88 0 0 chr3 94260774 94260854 -133263724 + AT_rich Low_complexity Low_complexity 1 80 0 23 54 0 0 chr3 94261600 94261637 -133262941 + AT_rich Low_complexity Low_complexity 1 37 0 324 247 147 67 chr3 94262178 94262328 -133262250 + MIR SINE MIR 42 203 -59 2445 103 0 0 chr3 94262659 94263008 -133261570 - L1PA7 LINE L1 -1052 5094 4746 6849 63 3 1 chr3 94263010 94264056 -133260522 + L1PA7 LINE L1 5097 6144 -10 456 253 0 0 chr3 94264458 94264553 -133260025 + MSTD LTR MaLR 3 97 -331 1368 158 33 12 chr3 94264558 94264799 -133259779 + AluSq SINE Alu 1 246 -67 1221 100 0 0 chr3 94264800 94264960 -133259618 + AluSq SINE Alu 5 164 -149 441 146 0 34 chr3 94264960 94265049 -133259529 + AluYb8 SINE Alu 228 313 -5 761 221 136 36 chr3 94265049 94265294 -133259284 + MSTD LTR MaLR 93 394 -2 220 343 82 55 chr3 94265392 94265538 -133259040 - MER5A DNA MER1_type -3 186 37 545 325 89 53 chr3 94267939 94268407 -133256171 + L2 LINE L2 2672 3170 -143 428 271 171 0 chr3 94268840 94268969 -133255609 - L2 LINE L2 -5 3308 3158 211 244 13 13 chr3 94268980 94269058 -133255520 + (TA)n Simple_repeat Simple_repeat 1 78 0 365 215 11 21 chr3 94269230 94269323 -133255255 - Charlie1a DNA MER1_type -4 1451 1360 2389 204 95 20 chr3 94269388 94270133 -133254445 - Charlie1a DNA MER1_type -99 1356 556 270 73 0 0 chr3 94270150 94270191 -133254387 + (TG)n Simple_repeat Simple_repeat 1 41 0 515 249 47 47 chr3 94270191 94270384 -133254194 - Charlie1a DNA MER1_type -1230 225 33 369 235 106 65 chr3 94271501 94271585 -133252993 + MIR SINE MIR 86 165 -97 2029 110 7 39 chr3 94271585 94271893 -133252685 + AluSp SINE Alu 1 298 -15 369 235 106 65 chr3 94271893 94271978 -133252600 + MIR SINE MIR 165 262 0 261 0 0 0 chr3 94272180 94272209 -133252369 + (A)n Simple_repeat Simple_repeat 1 29 0 301 257 14 0 chr3 94273148 94273222 -133251356 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 315 0 0 0 chr3 94273572 94273607 -133250971 + (CA)n Simple_repeat Simple_repeat 1 35 0 2264 112 0 0 chr3 94273836 94274148 -133250430 + AluSx SINE Alu 1 312 0 421 78 101 4 chr3 94274946 94275209 -133249369 + (TA)n Simple_repeat Simple_repeat 1 288 0 246 156 16 31 chr3 94275219 94275283 -133249295 + (TTATA)n Simple_repeat Simple_repeat 4 66 0 300 130 34 34 chr3 94275284 94275461 -133249117 + (TAA)n Simple_repeat Simple_repeat 3 179 0 * 713 102 57 19 chr3 94275431 94275997 -133248581 + (TA)n Simple_repeat Simple_repeat 1 587 0 22 35 0 0 chr3 94276179 94276208 -133248370 + AT_rich Low_complexity Low_complexity 1 29 0 540 136 0 0 chr3 94277333 94277414 -133247164 - AluSg/x SINE Alu -18 291 211 480 89 0 0 chr3 94277773 94277852 -133246726 + (TA)n Simple_repeat Simple_repeat 2 80 0 22 70 0 0 chr3 94278113 94278156 -133246422 + AT_rich Low_complexity Low_complexity 1 43 0 377 284 256 33 chr3 94278239 94278450 -133246128 + MIR SINE MIR 5 262 0 27 0 0 0 chr3 94279217 94279244 -133245334 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr3 94280428 94280465 -133244113 + AT_rich Low_complexity Low_complexity 1 37 0 483 307 145 14 chr3 94281404 94281687 -133242891 + LTR67 LTR ERVL 210 529 -28 21 0 0 0 chr3 94282139 94282160 -133242418 + AT_rich Low_complexity Low_complexity 1 21 0 621 192 53 159 chr3 94282339 94282467 -133242111 - MLT1A2 LTR MaLR -104 270 191 1973 142 0 3 chr3 94282467 94282763 -133241815 - AluSc SINE Alu -14 295 1 621 192 53 159 chr3 94282763 94282936 -133241642 - MLT1A2 LTR MaLR -183 191 1 2465 252 151 44 chr3 94282937 94284188 -133240390 - MLT1A1-int LTR MaLR -1 1370 5 1434 262 8 73 chr3 94284218 94284714 -133239864 - MLT2B1 LTR ERVL -56 464 1 332 240 48 96 chr3 94285810 94285956 -133238622 + LTR16C LTR ERVL 1 139 -352 352 203 149 0 chr3 94286197 94286315 -133238263 + MLT1C LTR MaLR 1 133 -257 709 286 85 27 chr3 94286371 94286700 -133237878 + MLT1C LTR MaLR 97 444 -23 2052 107 0 54 chr3 94287318 94287635 -133236943 - AluSg SINE Alu -10 300 1 194 105 26 0 chr3 94288156 94288194 -133236384 + (TCTA)n Simple_repeat Simple_repeat 3 41 0 2119 106 0 7 chr3 94288876 94289194 -133235384 - AluSg SINE Alu 0 316 1 613 280 126 25 chr3 94289517 94289835 -133234743 - L1M4 LINE L1 -399 5785 5436 1218 213 50 86 chr3 94290638 94290966 -133233612 + MSTB2 LTR MaLR 110 425 -32 1467 103 5 0 chr3 94290966 94291180 -133233398 - L1MA1 LINE L1 0 6302 6088 1218 213 50 86 chr3 94291180 94291212 -133233366 + MSTB2 LTR MaLR 425 457 0 982 253 0 17 chr3 94291212 94291449 -133233129 - MLT1A1 LTR MaLR -93 272 40 1126 217 77 59 chr3 94291599 94292041 -133232537 - L1ME2 LINE L1 -198 5966 5517 23 33 0 0 chr3 94292947 94292977 -133231601 + AT_rich Low_complexity Low_complexity 1 30 0 231 317 42 30 chr3 94292985 94293152 -133231426 + L1ME1 LINE L1 5109 5277 -869 327 292 51 15 chr3 94293506 94293643 -133230935 + L1ME1 LINE L1 5739 5880 -286 1311 192 148 19 chr3 94293911 94294229 -133230349 - MLT1A1 LTR MaLR 0 365 7 301 247 13 0 chr3 94294269 94294346 -133230232 - HsTC2 DNA Tc2 -1811 87 10 2178 109 0 3 chr3 94294522 94294825 -133229753 + AluSg SINE Alu 1 302 -8 21 0 0 0 chr3 94294982 94295003 -133229575 + AT_rich Low_complexity Low_complexity 1 21 0 234 254 0 0 chr3 94296407 94296470 -133228108 + (CAATA)n Simple_repeat Simple_repeat 3 65 0 2078 112 0 23 chr3 94296955 94297260 -133227318 - AluSg SINE Alu -12 298 1 29 78 0 0 chr3 94297907 94297971 -133226607 + AT_rich Low_complexity Low_complexity 1 64 0 235 224 0 0 chr3 94298042 94298100 -133226478 - L1 LINE L1 -1815 4331 4274 * 578 88 0 0 chr3 94298099 94298179 -133226399 + L1PBa LINE L1 2829 2908 -3955 * 1995 182 10 0 chr3 94298175 94298559 -133226019 + L1P LINE L1 4927 5314 -832 5818 114 10 7 chr3 94298559 94299691 -133224887 + L1PA14 LINE L1 5008 6147 -14 192 40 0 0 chr3 94299704 94299729 -133224849 + (TTTTTG)n Simple_repeat Simple_repeat 4 28 0 5296 217 42 42 chr3 94299729 94299818 -133224760 + L1 LINE L1 2894 2982 -3880 2225 99 3 16 chr3 94299818 94300131 -133224447 + AluSc SINE Alu 1 309 0 5296 217 42 42 chr3 94300131 94302027 -133222551 + L1 LINE L1 2982 5000 -1862 415 313 111 41 chr3 94302034 94302350 -133222228 - L1M4 LINE L1 -841 5305 4968 11246 188 30 11 chr3 94303145 94305188 -133219390 - L1MA3 LINE L1 0 7724 5585 1881 144 0 3 chr3 94305188 94305503 -133219075 + AluSq SINE Alu 1 314 0 11246 188 30 11 chr3 94305503 94306975 -133217603 - L1MA3 LINE L1 -2139 5585 4142 25059 148 16 11 chr3 94307049 94312222 -133212356 - L1PA8A LINE L1 0 6446 1239 222 91 0 0 chr3 94312222 94312255 -133212323 + (TTG)n Simple_repeat Simple_repeat 1 33 0 25059 148 16 11 chr3 94312255 94312316 -133212262 - L1PA8A LINE L1 -5207 1239 1180 7292 131 6 4 chr3 94312329 94313426 -133211152 - L1PA8A LINE L1 -4774 1101 2 6494 160 24 13 chr3 94313429 94314621 -133209957 - L1MA3 LINE L1 -3423 4142 2921 1706 189 138 0 chr3 94314621 94314997 -133209581 + MSTA LTR MaLR 1 428 0 6494 160 24 13 chr3 94314997 94315389 -133209189 - L1MA3 LINE L1 -4644 2921 2535 2450 183 16 0 chr3 94315373 94315810 -133208768 - L1MA3 LINE L1 -6518 1047 604 * 21 0 0 0 chr3 94316881 94316902 -133207676 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr3 94318198 94318234 -133206344 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr3 94318853 94318877 -133205701 + AT_rich Low_complexity Low_complexity 1 24 0 240 305 21 11 chr3 94319638 94319733 -133204845 + MIR SINE MIR 50 145 -117 564 231 67 0 chr3 94320061 94320195 -133204383 + MER58B DNA MER1_type 185 327 -14 356 247 56 120 chr3 94321502 94321548 -133203030 - MLT1G LTR MaLR -8 582 535 1728 170 11 0 chr3 94321548 94321831 -133202747 - AluSx SINE Alu -21 291 6 356 247 56 120 chr3 94321831 94322344 -133202234 - MLT1G LTR MaLR -55 535 61 204 118 29 0 chr3 94327779 94327813 -133196765 + (CA)n Simple_repeat Simple_repeat 2 36 0 2447 118 3 6 chr3 94329485 94329850 -133194728 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr3 94330225 94330248 -133194330 + AT_rich Low_complexity Low_complexity 1 23 0 257 315 79 62 chr3 94331493 94331785 -133192793 + L2 LINE L2 2973 3269 -44 315 146 0 0 chr3 94332443 94332498 -133192080 + (TG)n Simple_repeat Simple_repeat 2 56 0 190 206 0 0 chr3 94333474 94333508 -133191070 - L2 LINE L2 -8 3305 3272 1275 326 35 21 chr3 94334871 94335525 -133189053 + L1MC4a LINE L1 5392 6054 -1754 459 264 7 21 chr3 94335730 94335870 -133188708 + L1ME1 LINE L1 6024 6161 -5 240 35 0 0 chr3 94336130 94336159 -133188419 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 1909 148 16 0 chr3 94336161 94336464 -133188114 - AluSq SINE Alu 0 313 6 561 255 60 16 chr3 94336475 94336659 -133187919 + L2 LINE L2 3114 3305 -8 545 299 54 91 chr3 94336805 94336988 -133187590 - L2 LINE L2 -1163 2151 1963 255 31 0 0 chr3 94336988 94337020 -133187558 + (CA)n Simple_repeat Simple_repeat 2 33 0 545 299 54 91 chr3 94337020 94337244 -133187334 - L2 LINE L2 -1351 1963 1759 666 306 52 46 chr3 94337319 94337666 -133186912 - MLT1H1 LTR MaLR -168 387 39 1932 195 5 16 chr3 94338054 94338428 -133186150 - MSTB1 LTR MaLR -59 373 4 305 131 16 0 chr3 94338429 94338490 -133186088 + (TA)n Simple_repeat Simple_repeat 1 62 0 4636 48 3 0 chr3 94338536 94339114 -133185464 - L1PA4 LINE L1 0 6155 5576 1317 33 0 0 chr3 94339114 94339288 -133185290 + L1PA4 LINE L1 5422 5595 -559 192 282 155 0 chr3 94339393 94339464 -133185114 + L2 LINE L2 3183 3264 -49 23 33 0 0 chr3 94339642 94339672 -133184906 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr3 94339766 94339799 -133184779 + AT_rich Low_complexity Low_complexity 1 33 0 188 321 0 0 chr3 94340605 94340658 -133183920 + L2 LINE L2 3256 3308 -5 23 33 0 0 chr3 94340683 94340713 -133183865 + AT_rich Low_complexity Low_complexity 1 30 0 181 317 0 0 chr3 94340931 94340972 -133183606 - L3b LINE CR1 -106 1477 1437 21 0 0 0 chr3 94341067 94341088 -133183490 + AT_rich Low_complexity Low_complexity 1 21 0 905 369 67 27 chr3 94341191 94342105 -133182473 + HERVL LTR ERVL 2953 3902 -1752 540 351 76 21 chr3 94342273 94342601 -133181977 + HERVL LTR ERVL 4106 4451 -1203 475 271 131 38 chr3 94343757 94343993 -133180585 + LTR16A1 LTR ERVL 173 430 -27 21 57 0 0 chr3 94344388 94344423 -133180155 + AT_rich Low_complexity Low_complexity 1 35 0 203 211 13 40 chr3 94345214 94345290 -133179288 + (TAAA)n Simple_repeat Simple_repeat 4 77 0 23 33 0 0 chr3 94346500 94346530 -133178048 + AT_rich Low_complexity Low_complexity 1 30 0 3300 72 13 13 chr3 94347651 94348121 -133176457 - L1PA8 LINE L1 0 6172 5703 209 151 75 0 chr3 94348133 94348186 -133176392 + A-rich Low_complexity Low_complexity 2 58 0 1462 195 3 29 chr3 94349081 94349388 -133175190 - AluJb SINE Alu -1 311 13 252 293 193 13 chr3 94350437 94350587 -133173991 + L2 LINE L2 2611 2787 -527 677 276 74 14 chr3 94350793 94351010 -133173568 - HERVL40 LTR ERVL -5300 230 1 478 183 75 33 chr3 94351011 94351131 -133173447 - LTR40a LTR ERVL 0 519 395 356 290 79 13 chr3 94351171 94351474 -133173104 - L1M4 LINE L1 -1438 4708 4386 282 196 20 0 chr3 94352076 94352127 -133172451 - MLT1E1 LTR MaLR -538 116 65 554 235 154 9 chr3 94352128 94352349 -133172229 - L1M4 LINE L1 -2809 3337 3085 980 276 53 14 chr3 94352361 94352778 -133171800 + L1M4 LINE L1 2448 2880 -3266 1278 227 85 19 chr3 94352784 94353150 -133171428 - MLT1B LTR MaLR 0 390 1 2982 176 10 0 chr3 94353679 94354197 -133170381 - Tigger1 DNA MER2_type 0 2418 1896 2063 260 107 67 chr3 94354198 94354694 -133169884 + Tigger1 DNA MER2_type 355 883 -1535 1612 116 4 0 chr3 94354694 94354919 -133169659 - AluSx SINE Alu -86 226 1 2063 260 107 67 chr3 94354919 94355046 -133169532 + Tigger1 DNA MER2_type 883 1003 -1415 1680 202 6 29 chr3 94355044 94355390 -133169188 - Tigger1 DNA MER2_type -2080 338 1 * 507 134 72 0 chr3 94355685 94355782 -133168796 + L1MA4 LINE L1 6181 6284 -16 1789 154 55 25 chr3 94355783 94356146 -133168432 - THE1C LTR MaLR -1 374 1 24 67 0 0 chr3 94356647 94356692 -133167886 + AT_rich Low_complexity Low_complexity 1 45 0 7515 25 0 12 chr3 94356936 94358012 -133166566 - L1PA4 LINE L1 0 6155 5089 5972 45 1 4 chr3 94358012 94358769 -133165809 + L1PA4 LINE L1 4347 5101 -1045 27 0 0 0 chr3 94358929 94358956 -133165622 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chr3 94359019 94359050 -133165528 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3 94359121 94359149 -133165429 + AT_rich Low_complexity Low_complexity 1 28 0 770 240 84 102 chr3 94359762 94360166 -133164412 + MER57A LTR ERV1 2 398 -5 362 302 41 24 chr3 94360174 94360343 -133164235 + MER57A-int LTR ERV1 3 174 -7363 3513 176 34 0 chr3 94361032 94361216 -133163362 - L1P4 LINE L1 -564 5597 5421 2414 62 10 0 chr3 94361216 94361524 -133163054 - AluY SINE Alu 0 311 1 3513 176 34 0 chr3 94361524 94362227 -133162351 - L1P4 LINE L1 -740 5421 4679 3684 90 28 6 chr3 94362228 94362760 -133161818 + L1PA13 LINE L1 5615 6158 -5 554 197 15 22 chr3 94362881 94363018 -133161560 + MER57A-int LTR ERV1 297 432 -4504 855 176 148 64 chr3 94363164 94363555 -133161023 + MER57A-int LTR ERV1 1043 1466 -3470 351 293 63 63 chr3 94363407 94363677 -133160901 + LTR57-int LTR ERVL 1223 1492 -3851 * 249 128 0 0 chr3 94363835 94363882 -133160696 + (CCCA)n Simple_repeat Simple_repeat 3 49 0 617 223 74 74 chr3 94364044 94364421 -133160157 + MER57A-int LTR ERV1 1997 2373 -2563 248 250 58 0 chr3 94364437 94364489 -133160089 + Tigger5 DNA MER2_type 1 55 -2268 * 322 175 0 35 chr3 94364469 94364526 -133160052 + Tigger5 DNA MER2_type 2264 2318 -5 550 195 0 0 chr3 94364544 94364631 -133159947 - Tigger5 DNA MER2_type -2236 87 1 409 247 0 0 chr3 94364642 94364723 -133159855 + Tigger5 DNA MER2_type 2237 2317 -6 393 266 9 0 chr3 94364734 94364843 -133159735 + LOR1-int LTR ERV1 4049 4158 -3962 6084 188 33 15 chr3 94364973 94367173 -133157405 - L1MA4 LINE L1 -6 6294 4054 28 48 0 0 chr3 94368212 94368254 -133156324 + AT_rich Low_complexity Low_complexity 1 42 0 325 305 78 14 chr3 94368746 94368887 -133155691 - MLT1D LTR MaLR -1 504 355 205 89 44 0 chr3 94368892 94368937 -133155641 + T-rich Low_complexity Low_complexity 2 48 0 180 0 0 0 chr3 94369232 94369252 -133155326 + (TTA)n Simple_repeat Simple_repeat 2 21 0 756 43 0 0 chr3 94369253 94369346 -133155232 - L1PA4 LINE L1 -17 6138 6046 30 69 0 0 chr3 94371118 94371176 -133153402 + AT_rich Low_complexity Low_complexity 1 58 0 408 287 21 80 chr3 94371259 94371447 -133153131 - MER5B DNA MER1_type -1 177 1 258 156 0 0 chr3 94372313 94372358 -133152220 + CT-rich Low_complexity Low_complexity 3 47 0 28 29 0 0 chr3 94372991 94373026 -133151552 + AT_rich Low_complexity Low_complexity 1 35 0 293 267 13 27 chr3 94373064 94373139 -133151439 + L2 LINE L2 3226 3299 -14 309 364 0 0 chr3 94374001 94374152 -133150426 + (TGG)n Simple_repeat Simple_repeat 1 151 0 228 135 0 0 chr3 94374884 94374921 -133149657 + (ATG)n Simple_repeat Simple_repeat 3 39 0 1757 320 170 34 chr3 94374973 94376958 -133147620 - L2 LINE L2 -7 3306 1059 270 0 0 0 chr3 94579016 94579046 -132945532 + (CAAAAA)n Simple_repeat Simple_repeat 2 31 0 1122 83 0 0 chr3 94580622 94580766 -132943812 + AluSg/x SINE Alu 154 297 -15 210 266 16 0 chr3 94580799 94580863 -132943715 + (CTA)n Simple_repeat Simple_repeat 3 67 0 248 302 19 38 chr3 94580866 94580972 -132943606 - MIR SINE MIR -1 261 158 235 278 56 44 chr3 94581529 94581592 -132942986 - L2 LINE L2 -1056 2258 2191 2015 117 0 0 chr3 94581592 94581894 -132942684 + AluSg SINE Alu 1 302 0 235 278 56 44 chr3 94581894 94581919 -132942659 - L2 LINE L2 -1123 2191 2168 222 149 21 0 chr3 94582511 94582558 -132942020 + T-rich Low_complexity Low_complexity 2 49 0 3534 155 16 8 chr3 94584802 94585429 -132939149 - L1MA6 LINE L1 -82 6218 5587 1720 194 0 0 chr3 94585506 94585795 -132938783 + AluSx SINE Alu 1 289 -23 185 182 0 0 chr3 94587480 94587513 -132937065 + MIR SINE MIR 7 39 -223 387 291 63 1 chr3 94588876 94589002 -132935576 - MIR3 SINE MIR -21 187 55 273 287 61 26 chr3 94590162 94590277 -132934301 + MIR3 SINE MIR 73 191 -17 390 297 14 40 chr3 94590527 94590675 -132933903 + MIR SINE MIR 116 259 -3 197 307 50 40 chr3 94592295 94592396 -132932182 - L2 LINE L2 -223 3049 2948 27 29 0 0 chr3 94592837 94592871 -132931707 + AT_rich Low_complexity Low_complexity 1 34 0 208 233 0 0 chr3 94592930 94592973 -132931605 + (ATG)n Simple_repeat Simple_repeat 2 44 0 450 303 97 16 chr3 94592994 94593179 -132931399 - MIR SINE MIR -35 227 28 191 341 0 45 chr3 94593314 94593402 -132931176 - MER5A DNA MER1_type -69 120 37 29 70 0 0 chr3 94594244 94594301 -132930277 + AT_rich Low_complexity Low_complexity 1 57 0 672 143 24 24 chr3 94594963 94595089 -132929489 + MER1B DNA MER1_type 214 339 0 2936 136 45 11 chr3 94595339 94595877 -132928701 - L1MA5A LINE L1 0 6297 5742 308 149 0 0 chr3 94595992 94596039 -132928539 + L1M2 LINE L1 5690 5736 -561 5544 181 38 46 chr3 94596046 94596439 -132928139 - L1MA5A LINE L1 -590 5707 5312 1875 119 34 0 chr3 94596439 94596708 -132927870 - AluSq SINE Alu -19 294 17 5544 181 38 46 chr3 94596708 94597308 -132927270 - L1MA5A LINE L1 -985 5312 4697 279 0 0 0 chr3 94597308 94597339 -132927239 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 5544 181 38 46 chr3 94597339 94597909 -132926669 - L1MA5A LINE L1 -1600 4697 4124 13533 186 25 20 chr3 94597939 94603002 -132921576 - L1MA3 LINE L1 0 7724 2647 2460 169 15 10 chr3 94603021 94603430 -132921148 - L1MA3 LINE L1 -7136 429 19 308 217 17 0 chr3 94603619 94603679 -132920899 + L2 LINE L2 3205 3265 -7 21 57 0 0 chr3 94603870 94603905 -132920673 + AT_rich Low_complexity Low_complexity 1 35 0 232 333 0 0 chr3 94603947 94604016 -132920562 - L2 LINE L2 0 3313 3245 228 250 0 57 chr3 94604032 94604120 -132920458 - LTR66 LTR ERVL -148 462 380 343 318 107 46 chr3 94605045 94605325 -132919253 + MER102b DNA MER1_type 1 297 -44 336 48 0 0 chr3 94605554 94605596 -132918982 + (GA)n Simple_repeat Simple_repeat 1 42 0 182 338 65 0 chr3 94606417 94606494 -132918084 - L2 LINE L2 0 3313 3232 364 223 107 0 chr3 94608722 94608825 -132915753 + MER3 DNA MER1_type 92 205 -4 285 291 50 70 chr3 94610256 94610497 -132914081 + L2 LINE L2 3078 3313 0 194 372 26 13 chr3 94610791 94610869 -132913709 - MIR SINE MIR -156 106 28 182 394 40 0 chr3 94611251 94611350 -132913228 - L2 LINE L2 -9 3263 3161 321 363 31 12 chr3 94611844 94612004 -132912574 - L2 LINE L2 -721 2593 2431 1420 191 44 17 chr3 94612210 94612504 -132912074 - AluJo SINE Alu -10 302 1 482 390 70 13 chr3 94612505 94612902 -132911676 - L2 LINE L2 -1721 1593 1174 22 35 0 0 chr3 94613100 94613129 -132911449 + AT_rich Low_complexity Low_complexity 1 29 0 210 186 23 0 chr3 94613736 94613779 -132910799 + T-rich Low_complexity Low_complexity 2 45 0 204 235 20 0 chr3 94615450 94615501 -132909077 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 244 254 0 0 chr3 94615739 94615794 -132908784 + (TA)n Simple_repeat Simple_repeat 2 56 0 670 200 35 0 chr3 94616093 94616238 -132908340 - L1 LINE L1 -792 5354 5205 * 1292 110 12 75 chr3 94616237 94616431 -132908147 + L1MA1 LINE L1 5959 6135 -167 1449 201 34 17 chr3 94616431 94616725 -132907853 + AluJb SINE Alu 1 299 -13 1292 110 12 75 chr3 94616725 94616784 -132907794 + L1MA1 LINE L1 6135 6196 -106 270 321 14 60 chr3 94618113 94618265 -132906313 + MIR SINE MIR 54 197 -61 673 118 0 0 chr3 94618403 94618505 -132906073 - AluS SINE Alu -211 102 1 324 119 0 0 chr3 94618822 94618881 -132905697 + (TG)n Simple_repeat Simple_repeat 2 60 0 570 246 23 51 chr3 94619512 94619966 -132904612 + L1MD3 LINE L1 5913 7985 -10 3656 201 49 27 chr3 94621123 94621275 -132903303 - L1MB8 LINE L1 -1 6177 6030 1015 182 0 0 chr3 94621275 94621445 -132903133 + FAM SINE Alu 2 171 -4 3656 201 49 27 chr3 94621445 94622774 -132901804 - L1MB8 LINE L1 -148 6030 4641 200 35 35 0 chr3 94622774 94622803 -132901775 + (TCTA)n Simple_repeat Simple_repeat 4 33 0 3656 201 49 27 chr3 94622803 94622984 -132901594 - L1MB8 LINE L1 -1537 4641 4465 1948 148 3 0 chr3 94624038 94624335 -132900243 - AluSx SINE Alu -10 302 5 35 0 0 0 chr3 94625396 94625431 -132899147 + AT_rich Low_complexity Low_complexity 1 35 0 1898 158 69 9 chr3 94627179 94627528 -132897050 - THE1C LTR MaLR -5 370 1 593 266 18 50 chr3 94627820 94628042 -132896536 - MER20 DNA MER1_type -4 215 1 383 344 25 31 chr3 94628209 94628369 -132896209 - MER5A DNA MER1_type -16 173 15 3359 179 63 18 chr3 94628808 94629494 -132895084 + L1MC1 LINE L1 5523 6239 -94 321 383 27 27 chr3 94629657 94629845 -132894733 - MER5A DNA MER1_type 0 189 2 250 329 77 70 chr3 94629923 94630209 -132894369 + L2 LINE L2 2616 2903 -411 608 200 0 0 chr3 94630626 94630736 -132893842 + FLAM_A SINE Alu 1 110 -32 24 0 0 0 chr3 94630750 94630774 -132893804 + AT_rich Low_complexity Low_complexity 1 24 0 235 360 20 0 chr3 94631129 94631279 -132893299 - L1ME LINE L1 -626 5540 5388 2092 285 108 36 chr3 94632452 94633687 -132890891 - L2 LINE L2 0 3313 1982 28 48 0 0 chr3 94634537 94634579 -132889999 + AT_rich Low_complexity Low_complexity 1 42 0 2097 152 24 8 chr3 94634634 94635003 -132889575 - THE1C LTR MaLR 0 375 1 10089 118 30 24 chr3 94635003 94636573 -132888005 - THE1C-int LTR MaLR 0 1580 1 1904 136 82 17 chr3 94636573 94636925 -132887653 - THE1C LTR MaLR 0 375 1 1866 152 10 36 chr3 94637136 94637445 -132887133 - AluSx SINE Alu -11 301 1 224 242 16 65 chr3 94637709 94637771 -132886807 - L2 LINE L2 0 3313 3255 320 282 113 21 chr3 94637907 94638049 -132886529 - L2 LINE L2 -20 3293 3139 496 104 13 0 chr3 94638051 94638128 -132886450 + (TA)n Simple_repeat Simple_repeat 2 79 0 2016 114 14 0 chr3 94638128 94638417 -132886161 - AluSx SINE Alu -19 293 1 537 228 65 60 chr3 94638518 94638702 -132885876 - MIR SINE MIR -52 210 26 306 289 70 33 chr3 94638723 94638966 -132885612 - L2 LINE L2 -343 2970 2708 1996 142 0 16 chr3 94639205 94639521 -132885057 - AluSx SINE Alu -1 311 1 408 284 63 8 chr3 94639533 94639660 -132884918 + L2 LINE L2 3161 3294 -19 373 313 16 31 chr3 94639817 94639945 -132884633 - L2 LINE L2 -5 3308 3183 2512 65 0 3 chr3 94640271 94640580 -132883998 - AluY SINE Alu -3 308 1 21 0 0 0 chr3 94641361 94641382 -132883196 + AT_rich Low_complexity Low_complexity 1 21 0 1116 244 39 13 chr3 94641764 94642076 -132882502 - MER58B DNA MER1_type -15 326 7 207 0 0 0 chr3 94642105 94642128 -132882450 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 273 57 0 0 chr3 94642147 94642182 -132882396 + (TA)n Simple_repeat Simple_repeat 2 36 0 528 28 56 14 chr3 94642182 94642254 -132882324 - L1PA3 LINE L1 -15 6140 6066 206 304 18 0 chr3 94642506 94642562 -132882016 + L3 LINE CR1 774 830 -747 519 313 114 23 chr3 94643024 94643375 -132881203 + L3 LINE CR1 1051 1433 -144 1688 91 23 88 chr3 94643499 94643806 -132880772 + L1PB2 LINE L1 5858 6144 -7 25 0 0 0 chr3 94644009 94644034 -132880544 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr3 94644761 94644789 -132879789 + AT_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr3 94645052 94645102 -132879476 + AT_rich Low_complexity Low_complexity 1 50 0 329 327 35 20 chr3 94645351 94645492 -132879086 - MIR SINE MIR -67 141 3 278 103 0 0 chr3 94645693 94645732 -132878846 + MADE1 DNA Mariner 42 80 0 6165 89 17 19 chr3 94645851 94646847 -132877731 - MER11C LTR ERVK 0 1071 1 268 360 58 42 chr3 94647337 94647715 -132876863 + L2 LINE L2 2521 2904 -410 252 211 0 0 chr3 94648059 94648111 -132876467 + L2 LINE L2 3221 3272 0 2293 118 0 0 chr3 94648986 94649292 -132875286 + AluSg SINE Alu 1 306 -4 28 71 0 0 chr3 94649315 94649371 -132875207 + AT_rich Low_complexity Low_complexity 1 56 0 210 286 0 0 chr3 94650294 94650343 -132874235 + MER5A DNA MER1_type 1 49 -140 1117 250 35 92 chr3 94650927 94651679 -132872899 - Charlie7 DNA MER1_type -1890 722 14 22 0 0 0 chr3 94654060 94654082 -132870496 + AT_rich Low_complexity Low_complexity 1 22 0 217 291 61 100 chr3 94656369 94656599 -132867979 - L3 LINE CR1 -695 882 662 231 304 18 0 chr3 94656612 94656668 -132867910 - L2 LINE L2 -697 2617 2561 230 217 58 0 chr3 94657215 94657284 -132867294 - MLT1H LTR MaLR -2 540 468 2308 100 0 0 chr3 94657295 94657604 -132866974 - AluSc SINE Alu 0 309 1 1230 266 127 0 chr3 94657675 94658044 -132866534 - MLT1H LTR MaLR -133 416 1 619 299 23 6 chr3 94658749 94658926 -132865652 - MER5A DNA MER1_type -9 180 1 273 240 120 24 chr3 94659722 94659850 -132864728 - MIR SINE MIR -63 145 20 390 114 0 0 chr3 94660456 94660526 -132864052 + (GA)n Simple_repeat Simple_repeat 2 71 0 21 36 0 0 chr3 94661665 94661693 -132862885 + AT_rich Low_complexity Low_complexity 1 28 0 2417 119 31 0 chr3 94661903 94662256 -132862322 - THE1B LTR MaLR 0 364 1 263 299 10 35 chr3 94662737 94662833 -132861745 - MIR SINE MIR -83 125 32 199 316 0 0 chr3 94663646 94663703 -132860875 + L2 LINE L2 3257 3313 0 21 0 0 0 chr3 94665093 94665114 -132859464 + AT_rich Low_complexity Low_complexity 1 21 0 273 246 0 0 chr3 94665576 94665633 -132858945 - MLT1A2 LTR MaLR -7 367 311 481 217 9 0 chr3 94665663 94665778 -132858800 + L1PA16 LINE L1 6047 6162 -4 627 184 14 82 chr3 94665913 94666074 -132858504 - MLT1A2 LTR MaLR -56 318 181 2303 97 0 13 chr3 94666172 94666480 -132858098 + AluSc SINE Alu 1 304 -5 2192 132 9 20 chr3 94666488 94666829 -132857749 + MER1B DNA MER1_type 1 337 0 495 297 14 20 chr3 94666833 94666981 -132857597 - MLT1A2 LTR MaLR -223 151 5 287 57 0 0 chr3 94667393 94667428 -132857150 + L1P2 LINE L1 5554 5588 -566 310 118 0 53 chr3 94667530 94667606 -132856972 + L1PA3 LINE L1 6078 6149 -6 21 57 0 0 chr3 94667607 94667642 -132856936 + AT_rich Low_complexity Low_complexity 1 35 0 198 314 32 64 chr3 94667715 94667871 -132856707 + MIR SINE MIR 57 207 -55 1572 166 14 17 chr3 94667907 94668196 -132856382 - AluJb SINE Alu -16 296 9 1869 146 31 0 chr3 94669616 94669903 -132854675 + AluSx SINE Alu 8 303 -9 211 362 172 35 chr3 94669913 94670029 -132854549 - L2 LINE L2 0 3272 3141 183 367 0 0 chr3 94670206 94670266 -132854312 - MIR SINE MIR -105 157 98 234 250 14 56 chr3 94671150 94671222 -132853356 - L2 LINE L2 0 3272 3204 403 257 74 47 chr3 94671633 94671781 -132852797 - MIR SINE MIR -82 180 29 2652 27 0 0 chr3 94671929 94672226 -132852352 - AluY SINE Alu -14 297 1 230 170 0 0 chr3 94673562 94673609 -132850969 - LTR66 LTR ERVL -171 439 393 2136 74 7 4 chr3 94673630 94673900 -132850678 - AluY SINE Alu -20 291 21 215 317 0 42 chr3 94674066 94674208 -132850370 + (TATG)n Simple_repeat Simple_repeat 1 136 0 247 284 75 0 chr3 94676082 94676149 -132848429 + MIR SINE MIR 191 262 0 1292 202 15 89 chr3 94676800 94676881 -132847697 + MLT1A1 LTR MaLR 4 89 -276 1571 164 4 8 chr3 94676881 94677131 -132847447 + AluJb SINE Alu 30 278 -34 1292 202 15 89 chr3 94677131 94677440 -132847138 + MLT1A1 LTR MaLR 89 365 0 960 176 146 18 chr3 94678204 94678348 -132846230 + MER33 DNA MER1_type 1 116 -2469 902 189 0 0 chr3 94678348 94678507 -132846071 + L1PB4 LINE L1 5996 6154 -2 960 176 146 18 chr3 94678507 94678637 -132845941 + MER33 DNA MER1_type 116 302 -22 201 255 0 0 chr3 94678709 94678760 -132845818 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 198 267 67 33 chr3 94678935 94678995 -132845583 - MIR SINE MIR -198 64 3 1118 162 105 128 chr3 94679180 94679562 -132845016 + MLT2D LTR ERVL 2 374 -40 263 288 27 9 chr3 94679569 94679680 -132844898 + (TATATG)n Simple_repeat Simple_repeat 4 116 0 25 31 0 0 chr3 94679933 94679965 -132844613 + AT_rich Low_complexity Low_complexity 1 32 0 1979 271 117 107 chr3 94680750 94682191 -132842387 + L2 LINE L2 1233 2693 -621 703 206 0 0 chr3 94682191 94682322 -132842256 - FLAM_C SINE Alu -2 131 1 1979 271 117 107 chr3 94682322 94682476 -132842102 + L2 LINE L2 2693 2844 -470 276 283 21 112 chr3 94682648 94682835 -132841743 + L2 LINE L2 3143 3312 -1 2714 88 8 3 chr3 94682851 94683224 -132841354 - THE1C LTR MaLR 0 375 1 1359 81 0 0 chr3 94684280 94684453 -132840125 - AluY SINE Alu -13 298 126 213 122 0 61 chr3 94684556 94684605 -132839973 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 184 344 0 0 chr3 94684983 94685044 -132839534 - L2 LINE L2 -4 3309 3249 255 318 52 47 chr3 94685073 94685265 -132839313 - L2 LINE L2 -124 3189 2997 * 372 367 0 0 chr3 94685259 94685387 -132839191 - L2 LINE L2 -685 2629 2502 282 366 43 11 chr3 94685508 94685694 -132838884 - L2 LINE L2 -1022 2292 2101 232 262 84 56 chr3 94685691 94685798 -132838780 + MIR SINE MIR 153 262 0 * 23 33 0 0 chr3 94686696 94686726 -132837852 + AT_rich Low_complexity Low_complexity 1 30 0 885 150 80 5 chr3 94686726 94686913 -132837665 - L1MA4 LINE L1 -15 6285 6085 215 0 67 0 chr3 94687844 94687874 -132836704 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 1433 162 0 115 chr3 94687877 94688198 -132836380 - AluJb SINE Alu -28 284 1 327 308 163 2 chr3 94688782 94689017 -132835561 + L2 LINE L2 2990 3313 0 23 0 0 0 chr3 94689863 94689886 -132834692 + AT_rich Low_complexity Low_complexity 1 23 0 200 270 63 0 chr3 94691727 94691790 -132832788 + MIR SINE MIR 66 132 -130 2250 109 0 0 chr3 94691972 94692275 -132832303 - AluSq SINE Alu -5 308 6 347 260 117 7 chr3 94692429 94692583 -132831995 + L1ME LINE L1 5448 5618 -548 448 126 180 36 chr3 94692684 94692795 -132831783 + L1MA8 LINE L1 5900 6026 -265 620 140 35 9 chr3 94692816 94692930 -132831648 - L1MA6 LINE L1 -426 5874 5758 1310 179 11 18 chr3 94692930 94693080 -132831498 + L1MA8 LINE L1 6011 6168 -123 2173 112 3 0 chr3 94693080 94693385 -132831193 + AluSx SINE Alu 1 306 -6 1310 179 11 18 chr3 94693385 94693506 -132831072 + L1MA8 LINE L1 6168 6288 -3 1215 132 47 5 chr3 94695198 94695411 -132829167 - pTR5 LTR ERV1 -2046 392 171 324 194 41 31 chr3 94695413 94695511 -132829067 - LTR30 LTR ERV1 -80 642 544 4154 126 65 67 chr3 94695511 94696508 -132828070 - pTR5 LTR ERV1 -413 2025 741 21 0 0 0 chr3 94696882 94696903 -132827675 + AT_rich Low_complexity Low_complexity 1 21 0 301 328 76 0 chr3 94697177 94697296 -132827282 - MIR SINE MIR -115 147 20 21 0 0 0 chr3 94697827 94697848 -132826730 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 94700569 94700598 -132823980 + AT_rich Low_complexity Low_complexity 1 29 0 6997 58 9 18 chr3 94700937 94702458 -132822120 - L1PA7 LINE L1 -1 6153 4639 2795 16 0 0 chr3 94702458 94702769 -132821809 - AluY SINE Alu 0 311 1 6997 58 9 18 chr3 94702769 94702960 -132821618 - L1PA7 LINE L1 -1515 4639 4448 10189 105 2 3 chr3 94702964 94704460 -132820118 + L1PA7 LINE L1 2949 4443 -1703 268 376 60 0 chr3 94704843 94704960 -132819618 - L2 LINE L2 -4 3268 3145 350 379 77 25 chr3 94705569 94705896 -132818682 - L2 LINE L2 -2617 697 354 2134 110 17 0 chr3 94706214 94706513 -132818065 + AluSg SINE Alu 1 304 -6 189 107 0 0 chr3 94707136 94707164 -132817414 + (TCCC)n Simple_repeat Simple_repeat 3 30 0 22 35 0 0 chr3 94707336 94707365 -132817213 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr3 94707426 94707454 -132817124 + AT_rich Low_complexity Low_complexity 1 28 0 758 109 0 0 chr3 94711985 94712095 -132812483 - L1PA8 LINE L1 0 6172 6063 222 171 0 0 chr3 94712367 94712408 -132812170 + (TA)n Simple_repeat Simple_repeat 1 41 0 2687 10 0 0 chr3 94712484 94712783 -132811795 + AluY SINE Alu 1 299 -12 1334 117 0 0 chr3 94713097 94713294 -132811284 - L1PA16 LINE L1 -9 6157 5961 369 368 111 21 chr3 94713643 94714029 -132810549 + L2 LINE L2 2191 2611 -703 236 293 216 0 chr3 94714031 94714147 -132810431 + L2 LINE L2 3168 3308 -5 218 329 61 0 chr3 94714442 94714524 -132810054 + L2 LINE L2 3184 3270 -2 219 357 14 0 chr3 94714633 94714703 -132809875 + MIR SINE MIR 81 151 -57 659 13 0 0 chr3 94715085 94715162 -132809416 + L1PA3 LINE L1 6075 6151 -4 23 0 0 0 chr3 94715449 94715472 -132809106 + AT_rich Low_complexity Low_complexity 1 23 0 422 226 0 11 chr3 94715491 94715584 -132808994 + Charlie3 DNA MER1_type 1 92 -2618 1114 172 13 26 chr3 94717773 94718000 -132806578 - AluJo SINE Alu 0 312 89 261 359 15 15 chr3 94718260 94718391 -132806187 - L2 LINE L2 0 3313 3183 233 254 84 50 chr3 94718392 94718523 -132806055 - MIR SINE MIR -103 105 1 273 135 0 0 chr3 94718655 94718707 -132805871 + (TG)n Simple_repeat Simple_repeat 1 52 0 215 299 0 52 chr3 94719184 94719261 -132805317 - MIR SINE MIR -133 129 57 182 364 0 0 chr3 94720459 94720514 -132804064 + MIR SINE MIR 208 262 0 1625 188 120 14 chr3 94720534 94720950 -132803628 - MLT1C LTR MaLR -2 465 6 22 35 0 0 chr3 94720968 94720997 -132803581 + AT_rich Low_complexity Low_complexity 1 29 0 1113 135 0 0 chr3 94721201 94721364 -132803214 - AluSg/x SINE Alu -23 287 125 259 22 22 44 chr3 94721364 94721409 -132803169 + (TTTG)n Simple_repeat Simple_repeat 1 44 0 1993 108 7 0 chr3 94721409 94721687 -132802891 - AluY SINE Alu -31 280 1 1653 172 10 16 chr3 94722076 94722384 -132802194 - AluSp SINE Alu -7 306 1 21 36 0 0 chr3 94722423 94722451 -132802127 + AT_rich Low_complexity Low_complexity 1 28 0 354 364 67 40 chr3 94723036 94723484 -132801094 + L2 LINE L2 1825 2284 -1030 667 352 48 42 chr3 94724160 94724635 -132799943 + L2 LINE L2 2305 2782 -532 301 317 83 14 chr3 94724769 94724914 -132799664 + L2 LINE L2 3159 3313 0 320 215 76 0 chr3 94726155 94726234 -132798344 - MIR SINE MIR -1 261 177 311 329 12 0 chr3 94726210 94726295 -132798283 + L2 LINE L2 3174 3259 -13 * 396 229 85 8 chr3 94726442 94726560 -132798018 - MIR SINE MIR -105 157 31 352 252 143 34 chr3 94726764 94726911 -132797667 + MIR SINE MIR 29 191 -71 7587 21 5 1 chr3 94729102 94730325 -132794253 + L1PA4 LINE L1 4928 6153 -2 2329 38 0 3 chr3 94730040 94730327 -132794251 + L1PA4 LINE L1 5870 6155 0 770 348 53 0 chr3 94730838 94731194 -132793384 - MLT1J LTR MaLR -37 474 100 274 237 35 0 chr3 94731390 94731504 -132793074 + (TA)n Simple_repeat Simple_repeat 2 119 0 373 233 202 8 chr3 94731584 94731713 -132792865 - MIR SINE MIR -1 261 108 330 299 126 47 chr3 94731822 94732100 -132792478 - MARNA DNA Mariner -51 535 236 1644 170 24 7 chr3 94732223 94732512 -132792066 + AluJb SINE Alu 6 299 -13 992 147 8 5 chr3 94732816 94733016 -132791562 + L1MA8 LINE L1 5789 6113 -178 933 140 33 111 chr3 94733030 94733273 -132791305 + L1MA8 LINE L1 6066 6289 -2 356 311 129 26 chr3 94734481 94734674 -132789904 - MIR SINE MIR -1 261 49 23 0 0 0 chr3 94735376 94735399 -132789179 + AT_rich Low_complexity Low_complexity 1 23 0 2300 72 3 0 chr3 94735654 94735959 -132788619 - AluY SINE Alu -5 306 1 21 0 0 0 chr3 94737346 94737367 -132787211 + AT_rich Low_complexity Low_complexity 1 21 0 824 299 87 56 chr3 94737367 94737781 -132786797 - LTR16A LTR ERVL -10 440 14 3484 132 2 0 chr3 94738174 94738706 -132785872 - L1PA16 LINE L1 -9 6157 5625 2181 164 21 15 chr3 94738710 94739431 -132785147 + L1PA16 LINE L1 4888 5609 -557 225 314 0 0 chr3 94739962 94740032 -132784546 + CT-rich Low_complexity Low_complexity 3 72 0 804 291 124 29 chr3 94740254 94740851 -132783727 - HAL1 LINE L1 -739 1768 1115 33 0 0 0 chr3 94740882 94740915 -132783663 + AT_rich Low_complexity Low_complexity 1 33 0 6025 146 38 2 chr3 94740937 94742606 -132781972 - L1PA13 LINE L1 -1 6162 4432 24 0 0 0 chr3 94743325 94743349 -132781229 + AT_rich Low_complexity Low_complexity 1 24 0 1006 188 165 59 chr3 94743439 94743694 -132780884 + AluJo SINE Alu 1 282 -30 228 135 0 0 chr3 94744953 94744990 -132779588 + (TTC)n Simple_repeat Simple_repeat 2 38 0 30 27 0 0 chr3 94745322 94745359 -132779219 + AT_rich Low_complexity Low_complexity 1 37 0 591 345 108 31 chr3 94745452 94746066 -132778512 - L2 LINE L2 -711 2603 1943 284 344 137 52 chr3 94746163 94746311 -132778267 - L2 LINE L2 -1723 1591 1457 1742 164 6 25 chr3 94746311 94746628 -132777950 + AluJo SINE Alu 1 311 -1 284 344 137 52 chr3 94746628 94747734 -132776844 - L2 LINE L2 -1857 1457 230 771 287 69 36 chr3 94748058 94748420 -132776158 + L2 LINE L2 2940 3313 0 386 321 55 6 chr3 94748458 94748623 -132775955 + MARNA DNA Mariner 396 568 -18 200 143 24 0 chr3 94749802 94749844 -132774734 + GA-rich Low_complexity Low_complexity 2 44 0 218 320 16 0 chr3 94750815 94750886 -132773692 - MIR SINE MIR -62 146 74 1010 168 9 73 chr3 94752092 94752324 -132772254 + MER20 DNA MER1_type 3 219 0 21 0 0 0 chr3 94754028 94754049 -132770529 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr3 94754596 94754629 -132769949 + AT_rich Low_complexity Low_complexity 1 33 0 429 313 75 18 chr3 94754716 94754943 -132769635 - MER102a DNA MER1_type -5 325 86 23 68 0 0 chr3 94756977 94757021 -132767557 + AT_rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chr3 94757139 94757171 -132767407 + AT_rich Low_complexity Low_complexity 1 32 0 31 0 0 0 chr3 94758317 94758348 -132766230 + AT_rich Low_complexity Low_complexity 1 31 0 301 80 13 53 chr3 94758367 94758442 -132766136 + (TA)n Simple_repeat Simple_repeat 1 72 0 451 307 61 12 chr3 94758564 94758727 -132765851 - MIR SINE MIR -10 252 82 2111 97 0 14 chr3 94759056 94759345 -132765233 + AluSx SINE Alu 25 309 -3 23 54 0 0 chr3 94759591 94759628 -132764950 + AT_rich Low_complexity Low_complexity 1 37 0 1831 124 0 4 chr3 94759898 94760156 -132764422 - AluSg SINE Alu -15 295 39 1736 155 11 3 chr3 94760283 94760618 -132763960 - AluSx SINE Alu 0 337 1 234 111 56 0 chr3 94760843 94760879 -132763699 + MER9 LTR ERVK 1 38 -473 3302 114 2 12 chr3 94760879 94761380 -132763198 + MER9 LTR ERVK 16 511 0 29 78 0 0 chr3 94761763 94761827 -132762751 + AT_rich Low_complexity Low_complexity 1 64 0 3125 189 62 27 chr3 94762692 94763465 -132761113 - L1 LINE L1 -1207 4939 4140 4343 93 31 31 chr3 94763466 94764145 -132760433 + L1PB2 LINE L1 5470 6148 -3 365 123 15 0 chr3 94764405 94764470 -132760108 + (CA)n Simple_repeat Simple_repeat 1 66 0 186 354 144 44 chr3 94764493 94764812 -132759766 + L2 LINE L2 2874 3224 -48 560 219 0 0 chr3 94766548 94766644 -132757934 - Tigger7 DNA MER2_type 0 2491 2396 2617 169 20 73 chr3 94766644 94767188 -132757390 - Tigger7 DNA MER2_type -1970 517 3 261 312 92 64 chr3 94767361 94767611 -132756967 - MLT1K LTR MaLR -299 289 33 1686 174 0 3 chr3 94767862 94768144 -132756434 + AluSx SINE Alu 1 281 -31 306 0 0 0 chr3 94768147 94768181 -132756397 + (CTAA)n Simple_repeat Simple_repeat 3 36 0 212 262 0 0 chr3 94768192 94768253 -132756325 + A-rich Low_complexity Low_complexity 1 61 0 519 308 60 23 chr3 94768253 94768726 -132755852 + L1ME LINE L1 5289 5775 -387 1311 170 4 0 chr3 94768824 94769071 -132755507 + L1MA4 LINE L1 6043 6290 -10 215 284 71 47 chr3 94769914 94770041 -132754537 - MIR SINE MIR -68 194 65 266 375 57 72 chr3 94770694 94771043 -132753535 - L2 LINE L2 0 3272 2929 37 0 0 0 chr3 94771070 94771107 -132753471 + AT_rich Low_complexity Low_complexity 1 37 0 368 347 77 18 chr3 94771160 94771382 -132753196 - MIR SINE MIR 0 262 28 589 264 123 26 chr3 94771387 94771614 -132752964 + MIR SINE MIR 14 262 0 9790 67 17 1 chr3 94773872 94775918 -132748660 + L1PA6 LINE L1 4067 6136 -18 279 133 0 0 chr3 94776541 94776586 -132747992 + (TC)n Simple_repeat Simple_repeat 2 46 0 295 395 43 31 chr3 94776820 94776982 -132747596 + L2 LINE L2 3107 3270 -2 22 35 0 0 chr3 94777527 94777556 -132747022 + AT_rich Low_complexity Low_complexity 1 29 0 590 345 0 15 chr3 94777668 94777903 -132746675 - MIR SINE MIR -17 245 21 268 339 125 4 chr3 94779009 94779257 -132745321 + L2 LINE L2 1946 2223 -1091 207 0 0 0 chr3 94779361 94779384 -132745194 + (A)n Simple_repeat Simple_repeat 1 23 0 573 274 191 10 chr3 94779446 94779642 -132744936 + MIR SINE MIR 5 226 -36 515 297 27 60 chr3 94779677 94779977 -132744601 + L2 LINE L2 2214 2503 -811 636 295 102 6 chr3 94781283 94781605 -132742973 - L1M4 LINE L1 -1077 5069 4717 233 272 191 27 chr3 94781672 94781819 -132742759 + MIR SINE MIR 77 247 -15 193 308 51 39 chr3 94782294 94782372 -132742206 - MER5B DNA MER1_type -96 82 4 220 214 0 0 chr3 94782624 94782666 -132741912 + (TATATG)n Simple_repeat Simple_repeat 4 45 0 200 342 61 69 chr3 94786896 94787127 -132737451 + L2 LINE L2 3005 3233 -39 244 289 0 0 chr3 94789619 94789709 -132734869 - L1MC4 LINE L1 -1339 6703 6614 481 282 45 86 chr3 94790163 94790560 -132734018 + L1MC4a LINE L1 5502 5882 -1926 2109 243 58 11 chr3 94790675 94791214 -132733364 - MLT1F1 LTR MaLR -3 564 1 205 326 21 42 chr3 94791288 94791383 -132733195 + L2 LINE L2 3148 3240 -32 215 170 21 0 chr3 94791409 94791456 -132733122 + GA-rich Low_complexity Low_complexity 4 51 0 368 299 144 100 chr3 94791775 94792227 -132732351 + L2 LINE L2 2842 3313 0 37 0 0 0 chr3 94792913 94792950 -132731628 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr3 94793395 94793433 -132731145 + AT_rich Low_complexity Low_complexity 1 38 0 554 203 181 28 chr3 94794052 94794229 -132730349 - MER3 DNA MER1_type -1 208 5 27 29 0 0 chr3 94794327 94794361 -132730217 + AT_rich Low_complexity Low_complexity 1 34 0 24 77 0 0 chr3 94795177 94795229 -132729349 + AT_rich Low_complexity Low_complexity 1 52 0 1553 200 66 6 chr3 94795355 94795690 -132728888 - MLT1A1 LTR MaLR -3 362 8 243 239 0 0 chr3 94795724 94795770 -132728808 - L2 LINE L2 -64 3249 3204 180 111 0 0 chr3 94795921 94795948 -132728630 + (TG)n Simple_repeat Simple_repeat 1 27 0 304 333 9 9 chr3 94796521 94796629 -132727949 - MIR3 SINE MIR -89 119 12 235 254 0 0 chr3 94797234 94797293 -132727285 - L3 LINE CR1 -154 1423 1365 460 248 45 15 chr3 94797802 94797935 -132726643 - MLT1I LTR MaLR -270 139 3 385 331 21 0 chr3 94798057 94798202 -132726376 + (TATATG)n Simple_repeat Simple_repeat 2 149 0 295 261 11 34 chr3 94798385 94798473 -132726105 + MIR SINE MIR 68 153 -55 258 310 44 9 chr3 94799396 94799509 -132725069 - MIR SINE MIR -76 186 70 198 266 0 47 chr3 94800775 94800839 -132723739 + MIR SINE MIR 57 117 -145 530 196 31 80 chr3 94801352 94801393 -132723185 + MER105 DNA DNA 50 91 -113 2148 83 13 23 chr3 94801393 94801693 -132722885 - AluSg SINE Alu -13 297 1 530 196 31 80 chr3 94801693 94801814 -132722764 + MER105 DNA DNA 91 204 0 291 54 0 0 chr3 94801911 94801948 -132722630 + (CA)n Simple_repeat Simple_repeat 1 37 0 31 44 0 0 chr3 94802478 94802523 -132722055 + AT_rich Low_complexity Low_complexity 1 45 0 981 204 5 10 chr3 94802546 94802752 -132721826 - AluJb SINE Alu -11 301 97 6387 17 1 0 chr3 94803534 94804464 -132720114 - L1HS LINE L1 -166 5989 5059 34382 32 0 0 chr3 94804484 94808645 -132715933 + L1P LINE L1 900 5060 -1086 714 144 92 26 chr3 94808640 94808793 -132715785 + L1MA8 LINE L1 6125 6287 -4 * 216 200 0 0 chr3 94808964 94809024 -132715554 + (TATG)n Simple_repeat Simple_repeat 3 62 0 23 54 0 0 chr3 94809179 94809216 -132715362 + AT_rich Low_complexity Low_complexity 1 37 0 193 294 192 41 chr3 94809516 94809662 -132714916 + L3 LINE CR1 1267 1434 -143 197 236 42 42 chr3 94810021 94810093 -132714485 - L2 LINE L2 -62 3251 3180 426 205 54 36 chr3 94817206 94817318 -132707260 - MIR SINE MIR -2 260 147 263 239 14 84 chr3 94817542 94817684 -132706894 - HAL1 LINE L1 -337 2170 2039 309 315 9 0 chr3 94817807 94817915 -132706663 - HAL1 LINE L1 -702 1805 1697 740 263 52 15 chr3 94817999 94818269 -132706309 - HAL1 LINE L1 -1115 1392 1113 2016 146 0 3 chr3 94818347 94818649 -132705929 + AluSx SINE Alu 1 301 -11 2207 99 10 0 chr3 94819537 94819831 -132704747 - AluSc SINE Alu -12 297 1 329 110 12 122 chr3 94820130 94820212 -132704366 - MADE1 DNA Mariner -7 73 1 726 346 62 2 chr3 94821357 94821759 -132702819 - ERVL LTR ERVL -1465 4299 3874 684 306 86 37 chr3 94821771 94822427 -132702151 - ERVL LTR ERVL -2150 3504 2786 1755 126 4 15 chr3 94822590 94822861 -132701717 - AluSx SINE Alu -20 292 25 278 296 37 28 chr3 94822861 94822969 -132701609 - MLT1I LTR MaLR -271 138 30 229 250 0 0 chr3 94822969 94823013 -132701565 - MER2 DNA MER2_type 0 345 302 451 118 13 0 chr3 94823074 94823150 -132701428 - MER2 DNA MER2_type -136 209 133 1933 147 20 0 chr3 94823152 94823642 -132700936 + AluSx SINE Alu 1 496 0 601 170 16 33 chr3 94823460 94823707 -132700871 + GA-rich Low_complexity Low_complexity 2 245 0 787 197 28 0 chr3 94823715 94823857 -132700721 - MER2 DNA MER2_type -199 146 1 513 345 68 30 chr3 94824403 94824604 -132699974 - ERVL LTR ERVL -3092 2672 2480 1877 158 37 14 chr3 94824604 94824958 -132699620 - THE1B LTR MaLR 0 364 3 513 345 68 30 chr3 94824958 94825074 -132699504 - ERVL LTR ERVL -3284 2480 2370 2117 114 3 0 chr3 94825074 94825364 -132699214 - AluSp SINE Alu -22 291 1 513 345 68 30 chr3 94825364 94825512 -132699066 - ERVL LTR ERVL -3394 2370 2188 2692 33 0 18 chr3 94825930 94826264 -132698314 - L1PA4 LINE L1 -6 6149 5822 1102 151 99 67 chr3 94826654 94826938 -132697640 - MER33 DNA MER1_type 0 324 32 1748 161 20 0 chr3 94827937 94828229 -132696349 + AluJo SINE Alu 5 302 -10 24 32 0 0 chr3 94828572 94828603 -132695975 + AT_rich Low_complexity Low_complexity 1 31 0 393 271 145 6 chr3 94828639 94828805 -132695773 - MIR SINE MIR -2 260 72 21 57 0 0 chr3 94830357 94830392 -132694186 + AT_rich Low_complexity Low_complexity 1 35 0 315 0 0 0 chr3 94831688 94831723 -132692855 + (TG)n Simple_repeat Simple_repeat 1 35 0 258 32 0 0 chr3 94831722 94831753 -132692825 + (GA)n Simple_repeat Simple_repeat 1 31 0 * 21 0 0 0 chr3 94832306 94832327 -132692251 + AT_rich Low_complexity Low_complexity 1 21 0 316 264 280 6 chr3 94833029 94833211 -132691367 - MIR SINE MIR -26 236 5 323 264 55 9 chr3 94833312 94833422 -132691156 + L2 LINE L2 3175 3289 -24 183 380 114 12 chr3 94833460 94833626 -132690952 - L2 LINE L2 -445 2869 2687 1786 167 0 7 chr3 94836960 94837247 -132687331 + AluSx SINE Alu 1 285 -27 22 0 0 0 chr3 94837288 94837310 -132687268 + AT_rich Low_complexity Low_complexity 1 22 0 750 184 0 14 chr3 94838274 94838415 -132686163 + FLAM_C SINE Alu 1 139 -4 1104 150 36 0 chr3 94838845 94839038 -132685540 - AluY SINE Alu -11 300 101 4282 126 105 101 chr3 94839176 94840566 -132684012 - pTR5 LTR ERV1 0 2438 382 2198 226 65 70 chr3 94841755 94842588 -132681990 + MER63C DNA MER1_type 1 829 -101 26 0 0 0 chr3 94842622 94842648 -132681930 + AT_rich Low_complexity Low_complexity 1 26 0 237 299 13 13 chr3 94842682 94842759 -132681819 + MER63C DNA MER1_type 849 925 -5 318 358 87 45 chr3 94844608 94845033 -132679545 + L2 LINE L2 2871 3313 0 21 0 0 0 chr3 94845700 94845721 -132678857 + AT_rich Low_complexity Low_complexity 1 21 0 657 315 5 27 chr3 94845751 94845973 -132678605 - MIR SINE MIR -26 236 20 192 125 0 0 chr3 94846073 94846105 -132678473 + (TTTTTA)n Simple_repeat Simple_repeat 1 32 0 309 219 125 94 chr3 94846826 94846907 -132677671 - L2 LINE L2 0 3313 3225 1981 58 0 12 chr3 94846907 94847165 -132677413 + AluY SINE Alu 56 310 -1 309 219 125 94 chr3 94847165 94847211 -132677367 - L2 LINE L2 -88 3225 3182 1235 234 5 57 chr3 94847558 94847976 -132676602 - MLT2C1 LTR ERVL 0 397 2 965 300 96 44 chr3 94848528 94849283 -132675295 - L2 LINE L2 -13 3300 2508 3873 155 20 13 chr3 94849984 94850002 -132674576 + L1MB3 LINE L1 5461 5477 -706 180 0 0 0 chr3 94850002 94850022 -132674556 + (CAA)n Simple_repeat Simple_repeat 2 21 0 3873 155 20 13 chr3 94850022 94850718 -132673860 + L1MB3 LINE L1 5477 6180 -3 243 0 0 0 chr3 94853458 94853485 -132671093 + (CA)n Simple_repeat Simple_repeat 2 28 0 407 293 150 41 chr3 94853637 94853951 -132670627 - MLT1K LTR MaLR -101 487 140 212 311 101 25 chr3 94854443 94854562 -132670016 - MIR SINE MIR -57 205 78 34 65 0 0 chr3 94855383 94855445 -132669133 + AT_rich Low_complexity Low_complexity 1 62 0 213 108 0 0 chr3 94856583 94856620 -132667958 + (GA)n Simple_repeat Simple_repeat 2 38 0 417 345 102 0 chr3 94857918 94858115 -132666463 + MIR SINE MIR 15 231 -31 344 311 111 11 chr3 94859533 94859713 -132664865 - L2 LINE L2 -4 3309 3112 189 329 42 42 chr3 94859776 94859919 -132664659 + MIR SINE MIR 78 220 -42 265 136 68 11 chr3 94859930 94860037 -132664541 + (TA)n Simple_repeat Simple_repeat 1 113 0 263 358 42 0 chr3 94860184 94860279 -132664299 + MIR SINE MIR 19 117 -145 209 291 51 68 chr3 94860586 94860703 -132663875 + L2 LINE L2 2638 2752 -562 364 286 163 53 chr3 94860784 94861085 -132663493 + L2 LINE L2 2899 3232 -81 690 335 99 58 chr3 94861556 94862401 -132662177 - L2 LINE L2 -8 3305 2439 2297 113 31 8 chr3 94862452 94862806 -132661772 - THE1B LTR MaLR -2 362 1 199 288 120 52 chr3 94862821 94863012 -132661566 - L2 LINE L2 -843 2471 2268 4976 183 53 12 chr3 94863371 94864170 -132660408 + L1MCa LINE L1 6 855 -5571 300 27 0 0 chr3 94864170 94864207 -132660371 + (CAA)n Simple_repeat Simple_repeat 3 39 0 4976 183 53 12 chr3 94864207 94864399 -132660179 + L1MCa LINE L1 855 1038 -5388 509 257 129 0 chr3 94864545 94864685 -132659893 + MER63 DNA MER1_type 1 784 -278 256 195 170 54 chr3 94865291 94865383 -132659195 - FLAM_A SINE Alu -40 93 1 203 146 24 0 chr3 94867142 94867183 -132657395 + (TATATG)n Simple_repeat Simple_repeat 1 42 0 228 161 129 16 chr3 94867194 94867256 -132657322 - L1MC4 LINE L1 -1339 6703 6635 205 226 19 0 chr3 94867870 94867923 -132656655 + T-rich Low_complexity Low_complexity 5 58 0 387 41 0 0 chr3 94868311 94868360 -132656218 + (TG)n Simple_repeat Simple_repeat 2 50 0 370 301 13 33 chr3 94869189 94869342 -132655236 + GA-rich Low_complexity Low_complexity 2 151 0 2282 184 69 28 chr3 94869441 94870022 -132654556 + L1MD1 LINE L1 5561 6165 -77 531 250 24 91 chr3 94873228 94873436 -132651142 - MIR SINE MIR 0 262 69 214 182 0 0 chr3 94874961 94875005 -132649573 + (TA)n Simple_repeat Simple_repeat 2 45 0 282 286 10 31 chr3 94875503 94875601 -132648977 - L2 LINE L2 0 3272 3177 247 378 59 22 chr3 94876039 94876174 -132648404 + MIR SINE MIR 14 153 -109 32 0 0 0 chr3 94877562 94877594 -132646984 + AT_rich Low_complexity Low_complexity 1 32 0 2206 97 3 3 chr3 94877881 94878181 -132646397 + AluSp SINE Alu 1 300 -13 289 257 86 14 chr3 94878192 94878332 -132646246 - L1MC4 LINE L1 -89 7953 7804 293 312 32 13 chr3 94878458 94878615 -132645963 - L1MC4a LINE L1 -498 7310 7151 492 156 73 0 chr3 94878618 94878727 -132645851 + L1MA8 LINE L1 5993 6109 -182 267 152 0 0 chr3 94879127 94879173 -132645405 + GA-rich Low_complexity Low_complexity 4 49 0 330 346 6 19 chr3 94879625 94879787 -132644791 + L2 LINE L2 1848 2007 -1307 692 292 108 20 chr3 94879794 94880099 -132644479 - MLT1I LTR MaLR -8 401 70 216 250 0 19 chr3 94880192 94880244 -132644334 - MER5A DNA MER1_type -2 187 137 1986 264 75 26 chr3 94880392 94881244 -132643334 + MER97a DNA MER1_type 1 894 0 1372 310 91 30 chr3 94881524 94882561 -132642017 + L2 LINE L2 2204 3312 -1 766 244 120 30 chr3 94883228 94883462 -132641116 - MIR SINE MIR -6 256 2 392 172 11 0 chr3 94883521 94883608 -132640970 + GA-rich Low_complexity Low_complexity 4 91 0 2323 102 0 0 chr3 94883783 94884088 -132640490 + AluSg SINE Alu 1 305 -5 517 286 123 40 chr3 94884170 94884706 -132639872 + L1MC4a LINE L1 5311 5824 -297 235 278 62 21 chr3 94884713 94884810 -132639768 + HAL1b LINE L1 1223 1323 -25 542 153 15 15 chr3 94886386 94886523 -132638055 + GA-rich Low_complexity Low_complexity 1 137 0 32 26 0 0 chr3 94886944 94886983 -132637595 + AT_rich Low_complexity Low_complexity 1 39 0 32 26 0 0 chr3 94889055 94889094 -132635484 + AT_rich Low_complexity Low_complexity 1 39 0 369 327 199 9 chr3 94889270 94889481 -132635097 + MIR SINE MIR 12 262 0 286 236 150 86 chr3 94889469 94889504 -132635074 - MIR SINE MIR -66 196 165 * 2271 70 17 0 chr3 94889504 94889802 -132634776 - AluSp SINE Alu -10 303 1 286 236 150 86 chr3 94889802 94889906 -132634672 - MIR SINE MIR -97 165 48 21 36 0 0 chr3 94890673 94890701 -132633877 + AT_rich Low_complexity Low_complexity 1 28 0 934 192 6 0 chr3 94890810 94890977 -132633601 - AluJb SINE Alu -14 298 131 22 35 0 0 chr3 94894229 94894258 -132630320 + AT_rich Low_complexity Low_complexity 1 29 0 181 320 100 20 chr3 94896060 94896160 -132628418 - MIR SINE MIR -1 261 154 292 298 0 19 chr3 94896537 94896641 -132627937 + (TATATG)n Simple_repeat Simple_repeat 6 107 0 705 183 8 23 chr3 94896757 94897022 -132627556 + L1MA9 LINE L1 5934 6290 -22 235 333 58 50 chr3 94897135 94897375 -132627203 - L3 LINE CR1 -37 1540 1299 346 204 39 68 chr3 94897701 94897804 -132626774 + L1MCa LINE L1 1978 2077 -4349 702 312 47 0 chr3 94897856 94898071 -132626507 - MIR SINE MIR -36 226 2 1375 200 70 7 chr3 94899295 94899415 -132625163 + AluJo SINE Alu 3 114 -198 207 0 0 0 chr3 94899415 94899438 -132625140 + (TAA)n Simple_repeat Simple_repeat 3 25 0 1375 200 70 7 chr3 94899438 94899602 -132624976 + AluJo SINE Alu 114 305 -7 284 286 16 110 chr3 94901422 94901604 -132622974 - MER102a DNA MER1_type -23 307 143 405 102 0 0 chr3 94902262 94902321 -132622257 + (TG)n Simple_repeat Simple_repeat 1 59 0 1118 189 26 6 chr3 94902809 94903090 -132621488 + L1MA8 LINE L1 6025 6299 -13 22 35 0 0 chr3 94903090 94903119 -132621459 + AT_rich Low_complexity Low_complexity 1 29 0 229 306 75 30 chr3 94903137 94903336 -132621242 + L1MEd LINE L1 1050 1257 -4862 312 329 7 29 chr3 94903477 94903614 -132620964 + HAL1 LINE L1 1507 1640 -867 414 252 53 46 chr3 94904216 94904367 -132620211 - MIR SINE MIR -98 164 13 213 374 26 9 chr3 94904391 94904506 -132620072 - L2 LINE L2 -453 2861 2745 209 192 39 0 chr3 94904715 94904767 -132619811 + (TAAA)n Simple_repeat Simple_repeat 3 56 0 1011 219 143 99 chr3 94905811 94906328 -132618250 + MLT1F LTR MaLR 3 542 0 364 333 14 24 chr3 94906419 94906594 -132617984 - MIR SINE MIR -30 178 5 21 0 0 0 chr3 94906892 94906913 -132617665 + AT_rich Low_complexity Low_complexity 1 21 0 287 289 58 58 chr3 94907574 94907782 -132616796 - L1ME3A LINE L1 0 6170 5963 1256 343 112 61 chr3 94907898 94908622 -132615956 - L1MC5 LINE L1 -564 7397 6637 487 325 68 25 chr3 94909106 94909343 -132615235 - L2 LINE L2 -381 2933 2687 651 155 60 17 chr3 94909347 94909463 -132615115 + AluJb SINE Alu 6 126 -186 233 346 20 0 chr3 94909566 94909667 -132614911 - L2 LINE L2 -1176 2138 2036 2114 189 15 0 chr3 94909766 94910163 -132614415 - L1MA6 LINE L1 -10 6290 5888 261 253 36 24 chr3 94910246 94910329 -132614249 + MER63 DNA MER1_type 978 1061 0 686 280 192 43 chr3 94910329 94910751 -132613827 - L2 LINE L2 -1284 2030 1546 896 274 0 0 chr3 94910761 94910965 -132613613 + MER58A DNA MER1_type 4 207 -17 12329 71 2 2 chr3 94911004 94913402 -132611176 - L1PA6 LINE L1 -2 6152 3739 5545 157 19 30 chr3 94913406 94914484 -132610094 - MER11C LTR ERVK -4 1067 1 338 106 0 0 chr3 94914484 94914531 -132610047 - HERVK11 LTR ERVK 0 7953 7907 187 286 152 36 chr3 94914531 94914643 -132609935 - L3b LINE CR1 -55 1528 1404 6877 52 1 1 chr3 94914643 94915481 -132609097 - HERVK11 LTR ERVK -159 7794 6957 * 9742 59 16 0 chr3 94915466 94916690 -132607888 - HERVK11 LTR ERVK -1186 6767 5525 * 35493 77 8 1 chr3 94916688 94921253 -132603325 - HERVK11 LTR ERVK -3352 4601 1 5489 155 21 31 chr3 94921258 94922336 -132602242 - MER11C LTR ERVK -4 1067 1 19674 95 3 16 chr3 94922336 94925275 -132599303 - L1P LINE L1 -2401 3745 845 454 259 263 15 chr3 94925276 94925481 -132599097 - L2 LINE L2 -1903 1411 1156 448 184 10 20 chr3 94925485 94925583 -132598995 - LTR16B LTR ERVL 0 464 368 614 334 146 27 chr3 94925630 94926040 -132598538 - L2 LINE L2 -2613 701 243 595 207 0 0 chr3 94926337 94926448 -132598130 - MLT1F LTR MaLR 0 542 432 1241 246 59 4 chr3 94926569 94927033 -132597545 - MLT1F-int LTR MaLR -765 606 1 279 173 49 62 chr3 94927033 94927114 -132597464 - MLT1F LTR MaLR 0 567 488 2729 75 23 63 chr3 94927120 94927548 -132597030 + MLT2A1 LTR ERVL 1 411 -33 1238 261 63 52 chr3 94927575 94928019 -132596559 - MLT1F LTR MaLR -93 449 1 382 123 9 158 chr3 94928023 94928137 -132596441 - Charlie4 DNA MER1_type -1829 132 36 25 0 0 0 chr3 94928823 94928848 -132595730 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 94929192 94929213 -132595365 + AT_rich Low_complexity Low_complexity 1 21 0 1525 118 4 9 chr3 94929746 94929975 -132594603 - MER30 DNA MER1_type -2 228 1 195 184 0 0 chr3 94931711 94931749 -132592829 + (TATG)n Simple_repeat Simple_repeat 3 40 0 198 103 0 0 chr3 94931788 94931817 -132592761 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 180 216 0 0 chr3 94933214 94933251 -132591327 + L3 LINE CR1 893 929 -648 565 261 92 60 chr3 94934007 94934178 -132590400 - MIR SINE MIR -13 249 68 2289 82 3 23 chr3 94934178 94934483 -132590095 - AluSg SINE Alu -11 299 1 565 261 92 60 chr3 94934483 94934529 -132590049 - MIR SINE MIR -194 68 25 21 0 0 0 chr3 94935268 94935289 -132589289 + AT_rich Low_complexity Low_complexity 1 21 0 218 224 20 0 chr3 94937757 94937806 -132586772 + A-rich Low_complexity Low_complexity 3 52 0 22 0 0 0 chr3 94938029 94938051 -132586527 + AT_rich Low_complexity Low_complexity 1 22 0 1606 181 0 36 chr3 94938256 94938559 -132586019 - AluJb SINE Alu -18 294 3 35 92 0 0 chr3 94938799 94938897 -132585681 + AT_rich Low_complexity Low_complexity 1 98 0 365 281 103 27 chr3 94939315 94939539 -132585039 - L1ME LINE L1 -298 5823 5583 263 291 107 19 chr3 94939585 94939688 -132584890 + MIR SINE MIR 19 130 -78 33 56 0 0 chr3 94941563 94941617 -132582961 + AT_rich Low_complexity Low_complexity 1 54 0 521 301 60 15 chr3 94942267 94942466 -132582112 - MIR SINE MIR 0 262 55 2301 101 0 0 chr3 94942977 94943274 -132581304 + AluSx SINE Alu 1 297 -15 817 175 4 152 chr3 94943571 94943828 -132580750 - MER20 DNA MER1_type 0 219 1 282 288 25 0 chr3 94944219 94944299 -132580279 - L2 LINE L2 -212 3060 2979 25 0 0 0 chr3 94944694 94944719 -132579859 + AT_rich Low_complexity Low_complexity 1 25 0 433 269 113 36 chr3 94945493 94945857 -132578721 + L1ME4a LINE L1 5729 6120 -1 334 252 44 44 chr3 94947704 94947839 -132576739 + MIR SINE MIR 127 261 -1 305 352 38 0 chr3 94948068 94948173 -132576405 + MIR SINE MIR 33 141 -67 1170 273 77 39 chr3 94948474 94949107 -132575471 - L2 LINE L2 0 3313 2660 300 240 173 0 chr3 94949326 94949430 -132575148 - MER103 DNA DNA -44 122 1 282 339 113 17 chr3 94949450 94949627 -132574951 + MIR SINE MIR 31 224 -38 2219 86 3 29 chr3 94949989 94950302 -132574276 + AluSg SINE Alu 1 305 -5 191 316 105 32 chr3 94951677 94951772 -132572806 + L2 LINE L2 3169 3270 -2 2585 39 0 7 chr3 94952037 94952347 -132572231 + AluY SINE Alu 1 308 -3 2161 92 0 7 chr3 94953282 94953589 -132570989 - AluSx SINE Alu 0 305 1 306 363 112 48 chr3 94954583 94955084 -132569494 + L1M2 LINE L1 553 1085 -5764 396 0 0 0 chr3 94956504 94956548 -132568030 + (CA)n Simple_repeat Simple_repeat 2 45 0 23 0 0 0 chr3 94956855 94956878 -132567700 + AT_rich Low_complexity Low_complexity 1 23 0 209 182 0 0 chr3 94958070 94958103 -132566475 + polypyrimidine Low_complexity Low_complexity 3 35 0 24 53 0 0 chr3 94959186 94959224 -132565354 + AT_rich Low_complexity Low_complexity 1 38 0 2062 133 0 10 chr3 94959509 94959809 -132564769 - AluSx SINE Alu -13 299 3 357 224 191 105 chr3 94960161 94960371 -132564207 - MIR SINE MIR -26 236 9 186 96 39 19 chr3 94962287 94962339 -132562239 + (TA)n Simple_repeat Simple_repeat 1 53 0 409 338 75 21 chr3 94963508 94963748 -132560830 - MIR SINE MIR -1 261 9 1904 114 0 45 chr3 94964745 94965035 -132559543 + AluSq SINE Alu 1 277 -36 234 0 0 0 chr3 94965039 94965065 -132559513 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 384 22 0 0 chr3 94965065 94965110 -132559468 + (CA)n Simple_repeat Simple_repeat 1 45 0 1430 190 38 28 chr3 94965110 94965399 -132559179 + AluJo SINE Alu 1 292 -20 251 145 26 26 chr3 94965405 94965481 -132559097 + (TA)n Simple_repeat Simple_repeat 1 76 0 24 0 0 0 chr3 94965623 94965647 -132558931 + AT_rich Low_complexity Low_complexity 1 24 0 649 102 28 0 chr3 94966249 94966357 -132558221 + L1MA8 LINE L1 6178 6288 -3 467 372 86 30 chr3 94966675 94966976 -132557602 - L3 LINE CR1 -175 1402 1085 206 337 10 20 chr3 94970063 94970161 -132554417 + MIR3 SINE MIR 105 201 -7 254 351 75 0 chr3 94970227 94970321 -132554257 + MIR SINE MIR 2 102 -160 487 286 17 0 chr3 94970389 94970508 -132554070 + MIR SINE MIR 108 228 -34 200 118 29 0 chr3 94970583 94970617 -132553961 + T-rich Low_complexity Low_complexity 2 36 0 208 366 99 0 chr3 94971432 94971533 -132553045 + MIR SINE MIR 38 148 -114 291 261 14 0 chr3 94971962 94972031 -132552547 + L2 LINE L2 3202 3271 -1 24 32 0 0 chr3 94972318 94972349 -132552229 + AT_rich Low_complexity Low_complexity 1 31 0 188 355 86 11 chr3 94972437 94972530 -132552048 - L2 LINE L2 -16 3256 3157 1322 83 0 0 chr3 94972530 94972699 -132551879 + THE1C LTR MaLR 2 170 -205 6962 49 3 0 chr3 94972702 94973564 -132551014 - L1PA8 LINE L1 -5 6167 5303 1137 101 50 0 chr3 94973561 94973740 -132550838 + L1PA8 LINE L1 5132 5319 -827 * 1506 114 18 0 chr3 94973740 94973959 -132550619 + THE1C LTR MaLR 153 375 0 4456 139 41 8 chr3 94974285 94975064 -132549514 - L1PA16 LINE L1 -3 6163 5359 188 208 104 0 chr3 94975915 94975963 -132548615 - L2 LINE L2 -5 3308 3256 184 271 86 14 chr3 94975978 94976048 -132548530 - L3 LINE CR1 -7 1570 1496 848 152 127 25 chr3 94976835 94977032 -132547546 - MER20 DNA MER1_type -2 217 1 202 325 0 13 chr3 94977126 94977203 -132547375 + (CATA)n Simple_repeat Simple_repeat 3 78 0 348 94 0 0 chr3 94977267 94977320 -132547258 + (TG)n Simple_repeat Simple_repeat 1 53 0 704 156 28 14 chr3 94977654 94977795 -132546783 - FLAM_C SINE Alu 0 143 1 562 311 62 12 chr3 94977821 94978062 -132546516 + Charlie8 DNA MER1_type 21 273 -2144 866 163 12 12 chr3 94978207 94978367 -132546211 - FRAM SINE Alu -4 172 13 250 339 93 22 chr3 94978414 94978597 -132545981 - L2 LINE L2 -570 2744 2549 291 271 0 0 chr3 94981890 94981960 -132542618 - HAL1 LINE L1 -608 1899 1830 397 321 33 45 chr3 94981990 94982233 -132542345 - HAL1 LINE L1 -1424 1083 844 23 33 0 0 chr3 94982903 94982933 -132541645 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr3 94984077 94984107 -132540471 + AT_rich Low_complexity Low_complexity 1 30 0 1899 171 0 0 chr3 94984363 94984667 -132539911 - AluSx SINE Alu -8 304 1 26 0 0 0 chr3 94984667 94984693 -132539885 + AT_rich Low_complexity Low_complexity 1 26 0 1495 112 100 86 chr3 94984693 94985042 -132539536 - L1MA5A LINE L1 -2 6295 5942 21 0 0 0 chr3 94986020 94986041 -132538537 + AT_rich Low_complexity Low_complexity 1 21 0 1881 101 0 7 chr3 94986086 94986374 -132538204 - L1MA2 LINE L1 -1 6303 6018 28 61 0 0 chr3 94988222 94988271 -132536307 + AT_rich Low_complexity Low_complexity 1 49 0 679 237 90 0 chr3 94988294 94988450 -132536128 + MER20 DNA MER1_type 50 219 0 2624 126 14 23 chr3 94988466 94988693 -132535885 - Tigger2a DNA MER2_type -2274 434 211 1734 150 53 0 chr3 94988693 94988959 -132535619 - AluJb SINE Alu -24 288 9 2624 126 14 23 chr3 94988959 94989169 -132535409 - Tigger2a DNA MER2_type -2497 211 1 261 182 0 0 chr3 94989772 94989827 -132534751 + (CAT)n Simple_repeat Simple_repeat 2 56 0 209 256 128 0 chr3 94989834 94989920 -132534658 + MIR SINE MIR 163 259 -3 1354 165 25 8 chr3 94990849 94991085 -132533493 + AluJb SINE Alu 61 300 -12 2004 132 35 0 chr3 94991088 94991377 -132533201 + AluSx SINE Alu 9 307 -5 2621 196 94 29 chr3 94991576 94992159 -132532419 - LTR48 LTR ERV1 0 787 145 360 59 0 0 chr3 94992159 94992210 -132532368 + (TG)n Simple_repeat Simple_repeat 2 52 0 2621 196 94 29 chr3 94992210 94992360 -132532218 - LTR48 LTR ERV1 -642 145 6 864 140 22 28 chr3 94992374 94992553 -132532025 + L1MB2 LINE L1 5990 6167 -4 383 277 36 44 chr3 94992854 94992991 -132531587 + MIR SINE MIR 70 205 -57 23 0 0 0 chr3 94993087 94993110 -132531468 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 94993541 94993564 -132531014 + AT_rich Low_complexity Low_complexity 1 23 0 27 49 0 0 chr3 94993851 94993892 -132530686 + AT_rich Low_complexity Low_complexity 1 41 0 219 36 0 0 chr3 94994158 94994186 -132530392 + (TG)n Simple_repeat Simple_repeat 2 29 0 505 293 54 50 chr3 94995320 94995542 -132529036 + MIR SINE MIR 20 242 -20 25 51 0 0 chr3 94996063 94996102 -132528476 + AT_rich Low_complexity Low_complexity 1 39 0 32 0 0 0 chr3 94996379 94996411 -132528167 + AT_rich Low_complexity Low_complexity 1 32 0 230 28 0 56 chr3 94996914 94996950 -132527628 + (TTTTTG)n Simple_repeat Simple_repeat 3 36 0 258 259 149 37 chr3 94998416 94998559 -132526019 - MIR SINE MIR -38 170 3 254 173 13 0 chr3 95000401 95000476 -132524102 + (TA)n Simple_repeat Simple_repeat 1 76 0 5648 36 6 0 chr3 95002365 95003056 -132521522 - L1P LINE L1 -1180 4966 4272 1131 195 29 28 chr3 95003191 95003492 -132521086 + MSTB LTR MaLR 64 426 0 461 290 59 24 chr3 95003511 95003680 -132520898 - MIR SINE MIR -34 228 54 440 241 163 12 chr3 95003683 95003849 -132520729 - MLT1L LTR MaLR -145 470 280 2035 122 0 10 chr3 95005594 95005918 -132518660 + AluSg SINE Alu 1 310 0 224 208 40 152 chr3 95006205 95006256 -132518322 + MER5B DNA MER1_type 68 98 -80 1732 151 11 18 chr3 95006256 95006540 -132518038 - AluSx SINE Alu -20 292 11 224 208 40 152 chr3 95006540 95006613 -132517965 + MER5B DNA MER1_type 98 178 0 319 364 97 0 chr3 95006779 95006933 -132517645 + MIR SINE MIR 28 196 -66 200 329 0 27 chr3 95008650 95008723 -132515855 + MIR SINE MIR 69 139 -123 1571 136 49 59 chr3 95009104 95009391 -132515187 + AluSx SINE Alu 23 306 -6 22 35 0 0 chr3 95009961 95009990 -132514588 + AT_rich Low_complexity Low_complexity 1 29 0 334 239 149 52 chr3 95010582 95010716 -132513862 - MIR SINE MIR -4 258 112 290 312 128 16 chr3 95011096 95011221 -132513357 - MER5A DNA MER1_type 0 189 51 1455 157 12 31 chr3 95011388 95011643 -132512935 - MER1B DNA MER1_type 0 339 130 233 207 75 138 chr3 95011487 95011661 -132512917 + Charlie3 DNA MER1_type 151 313 -2397 * 506 173 157 27 chr3 95011695 95011850 -132512728 - MER3 DNA MER1_type -51 158 1 666 137 137 0 chr3 95012692 95012809 -132511769 + FLAM_C SINE Alu 1 133 0 2169 163 55 29 chr3 95013323 95013777 -132510801 + MLT1C LTR MaLR 2 467 0 2450 72 0 0 chr3 95013847 95014154 -132510424 + AluY SINE Alu 5 311 0 180 0 0 0 chr3 95014550 95014570 -132510008 + (TA)n Simple_repeat Simple_repeat 2 21 0 2617 42 3 0 chr3 95014811 95015117 -132509461 - AluY SINE Alu -4 307 1 254 279 97 45 chr3 95015498 95015652 -132508926 + MIR3 SINE MIR 34 195 -13 191 162 44 0 chr3 95015646 95015688 -132508890 - MIR SINE MIR -105 157 114 * 666 276 45 15 chr3 95015928 95016127 -132508451 + MIR SINE MIR 1 205 -57 495 0 0 0 chr3 95016826 95016881 -132507697 + (TG)n Simple_repeat Simple_repeat 2 56 0 2015 122 11 0 chr3 95016881 95017160 -132507418 - AluY SINE Alu -27 284 3 230 226 53 8 chr3 95017239 95017372 -132507206 + (TA)n Simple_repeat Simple_repeat 2 140 0 23 33 0 0 chr3 95017443 95017473 -132507105 + AT_rich Low_complexity Low_complexity 1 30 0 860 180 7 7 chr3 95017478 95017628 -132506950 - FAM SINE Alu -22 163 14 21 0 0 0 chr3 95018218 95018239 -132506339 + AT_rich Low_complexity Low_complexity 1 21 0 1463 171 87 3 chr3 95018560 95018847 -132505731 + AluJb SINE Alu 1 311 -1 340 233 17 86 chr3 95018850 95018966 -132505612 + MER81 DNA DNA 2 109 -5 21 36 0 0 chr3 95019281 95019309 -132505269 + AT_rich Low_complexity Low_complexity 1 28 0 323 309 21 11 chr3 95019360 95019454 -132505124 - MER5A DNA MER1_type -4 185 91 259 319 11 21 chr3 95020355 95020449 -132504129 + L2 LINE L2 3221 3313 0 378 239 0 0 chr3 95021069 95021136 -132503442 - L2 LINE L2 -2 3311 3245 24 32 0 0 chr3 95022136 95022167 -132502411 + AT_rich Low_complexity Low_complexity 1 31 0 1080 152 0 6 chr3 95022242 95022420 -132502158 + L1PA15 LINE L1 5938 6114 -51 412 68 81 0 chr3 95022646 95022720 -132501858 + L1PA15 LINE L1 6086 6165 0 230 116 23 0 chr3 95023152 95023195 -132501383 + (TTATA)n Simple_repeat Simple_repeat 4 47 0 599 279 39 13 chr3 95023837 95023991 -132500587 - MIR SINE MIR -92 170 13 216 103 26 0 chr3 95025278 95025317 -132499261 + (TA)n Simple_repeat Simple_repeat 1 40 0 27 73 0 0 chr3 95025658 95025713 -132498865 + AT_rich Low_complexity Low_complexity 1 55 0 25 0 0 0 chr3 95026389 95026414 -132498164 + AT_rich Low_complexity Low_complexity 1 25 0 234 127 51 38 chr3 95026581 95026660 -132497918 + (TA)n Simple_repeat Simple_repeat 1 80 0 23 0 0 0 chr3 95026971 95026994 -132497584 + AT_rich Low_complexity Low_complexity 1 23 0 43746 43 3 2 chr3 95027000 95033146 -132491432 - L1PA4 LINE L1 -3 6152 1 525 233 50 8 chr3 95033186 95033306 -132491272 - MLT1A2 LTR MaLR -77 297 173 324 281 192 0 chr3 95033449 95033595 -132490983 + MIR SINE MIR 5 178 -84 321 265 51 0 chr3 95033999 95034097 -132490481 - MER103 DNA DNA 0 166 64 216 0 0 0 chr3 95034414 95034438 -132490140 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2338 74 0 7 chr3 95034441 95034739 -132489839 - AluY SINE Alu -14 297 2 1033 118 37 25 chr3 95034755 95034916 -132489662 - FAM SINE Alu -12 163 1 199 327 60 73 chr3 95034975 95035223 -132489355 + L2 LINE L2 2245 2489 -825 1619 193 10 3 chr3 95035353 95035654 -132488924 - AluJb SINE Alu -9 303 1 219 330 21 21 chr3 95036011 95036108 -132488470 + L2 LINE L2 2995 3091 -181 285 311 115 8 chr3 95036792 95036914 -132487664 - L2 LINE L2 -2 3270 3136 47 0 0 0 chr3 95037875 95037922 -132486656 + AT_rich Low_complexity Low_complexity 1 47 0 2385 58 0 13 chr3 95038028 95038340 -132486238 - AluY SINE Alu -3 308 1 1461 174 4 4 chr3 95039393 95039634 -132484944 + 7SLRNA srpRNA srpRNA 19 259 -61 381 22 0 0 chr3 95039640 95039686 -132484892 + (CA)n Simple_repeat Simple_repeat 2 47 0 21 0 0 0 chr3 95040309 95040330 -132484248 + AT_rich Low_complexity Low_complexity 1 21 0 254 274 94 8 chr3 95040403 95040520 -132484058 - MIR3 SINE MIR -1 207 81 1246 229 64 15 chr3 95040885 95041212 -132483366 + MER2 DNA MER2_type 2 344 0 25 31 0 0 chr3 95041874 95041906 -132482672 + AT_rich Low_complexity Low_complexity 1 32 0 227 217 0 0 chr3 95043087 95043133 -132481445 + (TA)n Simple_repeat Simple_repeat 2 47 0 241 313 12 0 chr3 95043410 95043490 -132481088 + MIR SINE MIR 182 262 0 28 61 0 0 chr3 95043663 95043712 -132480866 + AT_rich Low_complexity Low_complexity 1 49 0 24 77 0 0 chr3 95043865 95043917 -132480661 + AT_rich Low_complexity Low_complexity 1 52 0 26 30 0 0 chr3 95044769 95044802 -132479776 + AT_rich Low_complexity Low_complexity 1 33 0 375 271 167 7 chr3 95044804 95044948 -132479630 - L1ME4a LINE L1 -6 6115 5949 21 0 0 0 chr3 95045619 95045640 -132478938 + AT_rich Low_complexity Low_complexity 1 21 0 1497 194 7 36 chr3 95045683 95045987 -132478591 - AluJb SINE Alu -15 297 3 2226 98 9 19 chr3 95046127 95046443 -132478135 + AluSp SINE Alu 1 313 0 231 395 0 0 chr3 95046551 95046637 -132477941 - L2 LINE L2 -43 3229 3144 460 286 57 70 chr3 95046740 95046967 -132477611 - L2 LINE L2 -548 2766 2543 238 318 0 37 chr3 95046997 95047104 -132477474 - L2 LINE L2 -2443 871 769 1772 155 0 7 chr3 95047868 95048193 -132476385 + AluSx SINE Alu 1 323 0 591 279 13 0 chr3 95049529 95049687 -132474891 + MIR SINE MIR 79 238 -24 234 316 51 0 chr3 95050638 95050717 -132473861 + L2 LINE L2 1948 2030 -1284 321 370 134 11 chr3 95050894 95051342 -132473236 + L2 LINE L2 2127 2629 -685 2016 127 0 0 chr3 95051503 95051795 -132472783 + AluSg SINE Alu 1 292 -18 57 66 0 0 chr3 95052671 95052777 -132471801 + AT_rich Low_complexity Low_complexity 1 106 0 27 0 0 0 chr3 95053158 95053185 -132471393 + AT_rich Low_complexity Low_complexity 1 27 0 26 50 0 0 chr3 95053301 95053341 -132471237 + AT_rich Low_complexity Low_complexity 1 40 0 224 197 0 30 chr3 95053571 95053637 -132470941 + (TATATG)n Simple_repeat Simple_repeat 2 65 0 428 256 111 0 chr3 95054355 95054472 -132470106 + L2 LINE L2 3181 3310 -3 2074 97 47 20 chr3 95054778 95055078 -132469500 + AluSx SINE Alu 3 310 -2 242 122 0 20 chr3 95055124 95055173 -132469405 + (GGGAGA)n Simple_repeat Simple_repeat 3 50 0 1439 157 29 33 chr3 95055607 95055881 -132468697 + AluSc SINE Alu 21 293 -16 21 36 0 0 chr3 95056407 95056435 -132468143 + AT_rich Low_complexity Low_complexity 1 28 0 504 260 82 7 chr3 95056554 95056700 -132467878 - MIR SINE MIR -22 240 84 1318 154 3 137 chr3 95056700 95057050 -132467528 + AluJb SINE Alu 8 310 -2 2288 100 0 7 chr3 95057070 95057371 -132467207 + AluSg SINE Alu 1 299 -11 23 33 0 0 chr3 95060274 95060304 -132464274 + AT_rich Low_complexity Low_complexity 1 30 0 1747 134 0 0 chr3 95060336 95060590 -132463988 + AluSc SINE Alu 56 309 0 2135 112 3 0 chr3 95061094 95061389 -132463189 - AluSx SINE Alu 0 312 17 2450 27 17 0 chr3 95061413 95061706 -132462872 - AluY SINE Alu -13 298 1 1261 188 98 11 chr3 95061725 95062001 -132462577 + AluJo SINE Alu 1 300 -12 336 165 58 8 chr3 95062894 95063015 -132461563 + (TA)n Simple_repeat Simple_repeat 2 128 0 23 54 0 0 chr3 95064163 95064200 -132460378 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr3 95065666 95065703 -132458875 + AT_rich Low_complexity Low_complexity 1 37 0 875 255 0 0 chr3 95066651 95066839 -132457739 - MER5A DNA MER1_type 0 189 2 23 92 0 0 chr3 95068350 95068415 -132456163 + AT_rich Low_complexity Low_complexity 1 65 0 455 333 81 32 chr3 95070095 95070281 -132454297 + MER91A DNA MER1_type 2 196 0 206 182 36 0 chr3 95070359 95070414 -132454164 + (TTG)n Simple_repeat Simple_repeat 2 58 0 2420 207 37 3 chr3 95070442 95071040 -132453538 + Charlie1 DNA MER1_type 2144 2761 0 556 332 88 4 chr3 95071730 95071956 -132452622 + MIR SINE MIR 1 245 -17 1379 199 76 0 chr3 95072066 95072317 -132452261 - AluJb SINE Alu -38 274 5 222 191 0 0 chr3 95072887 95072934 -132451644 + (TA)n Simple_repeat Simple_repeat 1 47 0 226 211 0 14 chr3 95072934 95073005 -132451573 - L1MCa LINE L1 -4362 2064 1995 268 127 36 0 chr3 95073510 95073565 -132451013 + (TA)n Simple_repeat Simple_repeat 2 58 0 538 327 37 9 chr3 95073602 95073816 -132450762 - MIR SINE MIR -4 258 39 270 0 0 0 chr3 95074096 95074126 -132450452 + (TG)n Simple_repeat Simple_repeat 2 31 0 2108 116 20 3 chr3 95074807 95075110 -132449468 - AluSq SINE Alu -5 308 1 32 0 0 0 chr3 95075110 95075142 -132449436 + AT_rich Low_complexity Low_complexity 1 32 0 34 42 0 0 chr3 95076909 95076957 -132447621 + AT_rich Low_complexity Low_complexity 1 48 0 206 316 7 15 chr3 95078847 95078983 -132445595 + (TA)n Simple_repeat Simple_repeat 1 135 0 2462 65 0 7 chr3 95078988 95079296 -132445282 + AluY SINE Alu 1 306 -5 261 135 0 0 chr3 95079298 95079350 -132445228 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 22 0 0 0 chr3 95079437 95079459 -132445119 + AT_rich Low_complexity Low_complexity 1 22 0 39 60 0 0 chr3 95079520 95079587 -132444991 + AT_rich Low_complexity Low_complexity 1 67 0 23 0 0 0 chr3 95079657 95079680 -132444898 + AT_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr3 95079983 95080028 -132444550 + AT_rich Low_complexity Low_complexity 1 45 0 553 220 11 94 chr3 95080319 95080510 -132444068 - MER5B DNA MER1_type -3 175 1 844 191 116 71 chr3 95081013 95081391 -132443187 - LTR7 LTR ERV1 -38 412 18 292 210 0 16 chr3 95081395 95081457 -132443121 - MIR SINE MIR -104 158 98 200 163 23 0 chr3 95082337 95082380 -132442198 + T-rich Low_complexity Low_complexity 5 48 0 1052 195 43 117 chr3 95084129 95084523 -132440055 - MLT1A1 LTR MaLR 0 365 1 213 39 0 0 chr3 95085062 95085088 -132439490 + (ATG)n Simple_repeat Simple_repeat 2 27 0 370 285 122 14 chr3 95085089 95085303 -132439275 - MIR SINE MIR -10 252 16 478 127 28 0 chr3 95085303 95085374 -132439204 - Charlie3 DNA MER1_type 0 2712 2640 588 143 0 0 chr3 95085377 95085461 -132439117 - Charlie3 DNA MER1_type -2449 261 178 936 99 0 0 chr3 95085461 95085582 -132438996 - AluJo SINE Alu -174 138 18 2893 223 74 10 chr3 95085593 95086379 -132438199 - L1ME2 LINE L1 0 6164 5329 431 255 38 32 chr3 95086376 95086533 -132438045 - L1ME LINE L1 -5901 169 12 * 1082 195 99 5 chr3 95086676 95086897 -132437681 + AluJo SINE Alu 41 282 -30 984 240 154 3 chr3 95087118 95087443 -132437135 - MLT1A2 LTR MaLR 0 374 1 678 310 36 36 chr3 95087445 95087777 -132436801 - L2 LINE L2 0 3313 2982 705 290 24 56 chr3 95090662 95091000 -132433578 - L1ME3A LINE L1 -23 6147 5821 2214 102 3 0 chr3 95091070 95091363 -132433215 - AluSg SINE Alu -16 294 1 363 44 0 0 chr3 95091723 95091768 -132432810 + (TA)n Simple_repeat Simple_repeat 1 45 0 715 248 40 5 chr3 95091882 95092080 -132432498 + MIR SINE MIR 28 232 -30 2564 80 8 8 chr3 95092251 95092614 -132431964 - L1PA13 LINE L1 0 6163 5801 243 0 0 0 chr3 95092785 95092812 -132431766 + (CA)n Simple_repeat Simple_repeat 2 28 0 213 39 0 0 chr3 95092811 95092837 -132431741 + (GA)n Simple_repeat Simple_repeat 2 27 0 * 1036 117 9 9 chr3 95092912 95093137 -132431441 + (TTTC)n Simple_repeat Simple_repeat 1 225 0 1097 181 5 29 chr3 95093145 95093349 -132431229 - AluJo SINE Alu -113 199 1 183 191 71 0 chr3 95093544 95093586 -132430992 - L2 LINE L2 -1 3312 3268 180 345 142 9 chr3 95093748 95093861 -132430717 + MIR3 SINE MIR 74 201 -7 1396 169 88 11 chr3 95094019 95094280 -132430298 + AluJo SINE Alu 1 281 -31 2170 127 0 0 chr3 95094568 95094868 -132429710 + AluSx SINE Alu 1 300 -12 2293 95 10 0 chr3 95099073 95099379 -132425199 - AluSq SINE Alu -4 309 1 284 247 39 13 chr3 95100564 95100641 -132423937 - L2 LINE L2 0 3313 3235 27 62 0 0 chr3 95102985 95103033 -132421545 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr3 95103264 95103285 -132421293 + AT_rich Low_complexity Low_complexity 1 21 0 254 297 34 51 chr3 95103743 95103861 -132420717 + MIR SINE MIR 91 206 -56 204 40 0 0 chr3 95105918 95105943 -132418635 + (T)n Simple_repeat Simple_repeat 1 25 0 473 306 36 50 chr3 95106653 95106894 -132417684 - MIR SINE MIR -13 249 14 257 283 126 54 chr3 95106935 95107158 -132417420 + MLT1L LTR MaLR 112 350 -265 542 252 69 6 chr3 95107767 95107926 -132416652 - MIR SINE MIR 0 262 94 1152 190 26 26 chr3 95107927 95108195 -132416383 + AluJb SINE Alu 1 268 -44 26 0 0 0 chr3 95108616 95108642 -132415936 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 95111135 95111156 -132413422 + AT_rich Low_complexity Low_complexity 1 21 0 2348 84 0 0 chr3 95111915 95112213 -132412365 + AluY SINE Alu 1 298 -13 451 292 130 0 chr3 95114390 95114575 -132410003 + MIR SINE MIR 39 247 -15 2343 240 21 25 chr3 95115079 95115707 -132408871 - MLT1E2 LTR MaLR 0 626 2 383 315 185 26 chr3 95116252 95116674 -132407904 - L2 LINE L2 -670 2644 2156 230 0 0 32 chr3 95117331 95117362 -132407216 + (TA)n Simple_repeat Simple_repeat 2 31 0 518 43 14 0 chr3 95117467 95117536 -132407042 + (TCTA)n Simple_repeat Simple_repeat 4 73 0 476 326 63 69 chr3 95117540 95117566 -132407012 + L2 LINE L2 507 532 -2782 2353 65 7 0 chr3 95117566 95117859 -132406719 - AluY SINE Alu -16 295 1 476 326 63 69 chr3 95117859 95118182 -132406396 + L2 LINE L2 532 854 -2460 734 183 166 18 chr3 95118213 95118382 -132406196 + MER46A DNA MER2_type 43 236 0 197 264 110 58 chr3 95118430 95118585 -132405993 + L2 LINE L2 2488 2650 -664 1401 153 32 75 chr3 95118922 95119204 -132405374 - AluJb SINE Alu -34 278 9 219 296 13 22 chr3 95119853 95119945 -132404633 + MIR SINE MIR 36 128 -80 * 920 151 17 34 chr3 95119940 95120119 -132404459 - MER5A DNA MER1_type -13 176 1 197 320 40 0 chr3 95120120 95120195 -132404383 + MIR SINE MIR 103 180 -82 283 42 62 0 chr3 95120982 95121030 -132403548 + T-rich Low_complexity Low_complexity 5 55 0 186 43 0 0 chr3 95121350 95121373 -132403205 + (T)n Simple_repeat Simple_repeat 1 23 0 320 296 30 0 chr3 95123011 95123143 -132401435 - L1ME4a LINE L1 -2 6119 5984 339 125 0 0 chr3 95123185 95123233 -132401345 - MLT2D LTR ERVL 0 464 417 237 149 65 13 chr3 95123267 95123421 -132401157 + (TA)n Simple_repeat Simple_repeat 2 163 0 1985 158 11 42 chr3 95123433 95123611 -132400967 - MLT2D LTR ERVL -64 350 187 2200 122 33 28 chr3 95123611 95123973 -132400605 + THE1B LTR MaLR 1 364 0 1985 158 11 42 chr3 95123973 95124155 -132400423 - MLT2D LTR ERVL -227 187 1 230 164 18 0 chr3 95124155 95124210 -132400368 + (CATA)n Simple_repeat Simple_repeat 2 57 0 320 167 39 29 chr3 95124210 95124312 -132400266 + (TA)n Simple_repeat Simple_repeat 1 103 0 246 250 28 0 chr3 95124396 95124468 -132400110 + CT-rich Low_complexity Low_complexity 4 77 0 386 303 157 11 chr3 95124478 95124663 -132399915 + L2 LINE L2 2204 2415 -899 260 385 23 28 chr3 95124803 95125021 -132399557 + L2 LINE L2 2626 2842 -472 21 36 0 0 chr3 95125973 95126001 -132398577 + AT_rich Low_complexity Low_complexity 1 28 0 274 283 71 30 chr3 95126093 95126192 -132398386 - MIR SINE MIR -3 259 157 2336 83 6 10 chr3 95126552 95126864 -132397714 + AluSq SINE Alu 3 313 0 1806 196 15 0 chr3 95127439 95127780 -132396798 - MER7A DNA MER2_type -1 345 2 360 0 0 0 chr3 95127786 95127826 -132396752 + (TG)n Simple_repeat Simple_repeat 2 41 0 27 29 0 0 chr3 95128025 95128059 -132396519 + AT_rich Low_complexity Low_complexity 1 34 0 1089 268 95 52 chr3 95128444 95129279 -132395299 + L2 LINE L2 2289 3263 -50 364 101 159 0 chr3 95129315 95129384 -132395194 - MADE1 DNA Mariner 0 80 1 219 326 23 23 chr3 95129881 95129967 -132394611 + MIR SINE MIR 70 155 -107 672 197 130 0 chr3 95132216 95132424 -132392154 - Charlie5 DNA MER1_type -49 2563 2329 266 200 80 0 chr3 95132424 95132499 -132392079 - Charlie5 DNA MER1_type -164 2448 2368 24 0 0 0 chr3 95134387 95134411 -132390167 + AT_rich Low_complexity Low_complexity 1 24 0 742 311 105 16 chr3 95134603 95135050 -132389528 - L1MC4a LINE L1 -1962 5846 5360 431 156 0 62 chr3 95135052 95135359 -132389219 + (TA)n Simple_repeat Simple_repeat 1 287 0 303 215 123 0 chr3 95135736 95135866 -132388712 - L1MC4a LINE L1 -837 5309 5164 2036 118 0 7 chr3 95136458 95136755 -132387823 - AluY SINE Alu -16 295 1 529 263 19 88 chr3 95136925 95137130 -132387448 + MIR SINE MIR 69 259 -3 21 0 0 0 chr3 95138279 95138300 -132386278 + AT_rich Low_complexity Low_complexity 1 21 0 1625 175 122 25 chr3 95138761 95139155 -132385423 + MSTB1 LTR MaLR 1 432 0 2389 67 0 0 chr3 95141010 95141310 -132383268 - AluY SINE Alu -11 300 1 226 365 60 20 chr3 95143231 95143480 -132381098 + L2 LINE L2 1699 1957 -1357 258 302 31 0 chr3 95143822 95143918 -132380660 - MIR SINE MIR 0 262 164 393 376 78 53 chr3 95144128 95144715 -132379863 + L2 LINE L2 2374 2975 -339 2552 118 3 0 chr3 95145529 95145892 -132378686 + THE1B LTR MaLR 1 364 0 2284 97 0 0 chr3 95146330 95146640 -132377938 + AluSg SINE Alu 1 310 0 2013 127 16 19 chr3 95146836 95147159 -132377419 + THE1C LTR MaLR 54 375 0 221 192 39 19 chr3 95148283 95148335 -132376243 - L2 LINE L2 -5 3308 3256 239 289 128 47 chr3 95148747 95148896 -132375682 + MIR3 SINE MIR 41 201 -7 2066 173 3 22 chr3 95149556 95149925 -132374653 + MLT2D LTR ERVL 3 364 -50 213 222 19 0 chr3 95149925 95149979 -132374599 + (CA)n Simple_repeat Simple_repeat 2 56 0 190 381 68 0 chr3 95150064 95150182 -132374396 + MIR3 SINE MIR 68 193 -15 664 297 124 43 chr3 95150274 95150782 -132373796 - Tigger8 DNA MER2_type -104 562 14 285 286 98 98 chr3 95152704 95152949 -132371629 - MIR SINE MIR 0 262 18 558 100 0 0 chr3 95153220 95153300 -132371278 + MADE1 DNA Mariner 1 80 0 207 100 0 0 chr3 95153636 95153666 -132370912 + (CA)n Simple_repeat Simple_repeat 1 30 0 239 349 69 50 chr3 95153718 95153936 -132370642 - L2 LINE L2 -194 3078 2857 27 62 0 0 chr3 95154334 95154382 -132370196 + AT_rich Low_complexity Low_complexity 1 48 0 395 298 48 68 chr3 95155366 95155420 -132369158 + LTR16C LTR ERVL 160 214 -277 342 67 0 0 chr3 95155420 95155465 -132369113 + (TG)n Simple_repeat Simple_repeat 2 46 0 395 298 48 68 chr3 95155465 95155662 -132368916 + LTR16C LTR ERVL 214 406 -85 198 150 0 0 chr3 95155770 95155810 -132368768 + (TTAAA)n Simple_repeat Simple_repeat 4 43 0 2365 96 0 0 chr3 95156081 95156383 -132368195 + AluSg SINE Alu 1 302 -8 505 262 55 7 chr3 95157101 95157246 -132367332 + MIR SINE MIR 49 200 -62 401 281 74 100 chr3 95157746 95158441 -132366137 + L1M4 LINE L1 4629 5306 -840 1625 136 110 19 chr3 95158441 95158750 -132365828 - MER44D DNA MER2_type -2 607 1 401 281 74 100 chr3 95158750 95158787 -132365791 + L1M4 LINE L1 5306 5342 -804 270 226 15 45 chr3 95159897 95160030 -132364548 - L1M4 LINE L1 -2167 3979 3851 8140 150 48 10 chr3 95160032 95160532 -132364046 - Tigger1 DNA MER2_type -1 2417 1938 216 0 0 0 chr3 95160532 95160556 -132364022 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 518 99 0 0 chr3 95160556 95160627 -132363951 - L1PA2 LINE L1 -10 6145 6075 8140 150 48 10 chr3 95160627 95161573 -132363005 - Tigger1 DNA MER2_type -479 1939 914 1890 98 0 0 chr3 95161610 95161875 -132362703 + Tigger1 DNA MER2_type 1611 1875 -543 5015 172 19 3 chr3 95161876 95162753 -132361825 - Tigger1 DNA MER2_type -1527 891 1 442 285 32 43 chr3 95162762 95163015 -132361563 - L1M4 LINE L1 -2302 3844 3595 1165 161 115 14 chr3 95163018 95163304 -132361274 + MER33 DNA MER1_type 7 321 -3 231 319 29 0 chr3 95163794 95163863 -132360715 + MIR SINE MIR 2 72 -190 997 282 73 47 chr3 95164748 95165319 -132359259 - L2 LINE L2 -8 3305 2717 7086 46 12 2 chr3 95167520 95168851 -132355727 - L1PA7 LINE L1 0 6154 4814 2107 117 0 0 chr3 95169017 95169322 -132355256 + AluSg SINE Alu 1 305 0 238 244 0 0 chr3 95169993 95170038 -132354540 + HsTC2 DNA Tc2 1856 1900 0 2127 125 0 0 chr3 95170421 95170716 -132353862 + AluSx SINE Alu 1 295 -17 1553 188 0 48 chr3 95171257 95171566 -132353012 + AluJo SINE Alu 3 296 -16 21 0 0 0 chr3 95171636 95171657 -132352921 + AT_rich Low_complexity Low_complexity 1 21 0 243 125 0 0 chr3 95172753 95172793 -132351785 + (T)n Simple_repeat Simple_repeat 1 40 0 518 286 28 28 chr3 95174259 95174441 -132350137 - MIR SINE MIR -71 191 10 342 0 0 0 chr3 95174774 95174812 -132349766 + (ATG)n Simple_repeat Simple_repeat 1 38 0 2060 94 0 31 chr3 95176656 95176944 -132347634 + AluSg SINE Alu 1 279 -31 248 0 31 0 chr3 95176948 95176980 -132347598 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2661 42 0 0 chr3 95177879 95178190 -132346388 + AluY SINE Alu 1 311 0 307 347 141 41 chr3 95180234 95181029 -132343549 - L2 LINE L2 -38 3234 2293 23 0 0 0 chr3 95181180 95181203 -132343375 + AT_rich Low_complexity Low_complexity 1 23 0 692 277 20 67 chr3 95181294 95181547 -132343031 - MIR SINE MIR 0 262 22 1514 183 33 46 chr3 95182638 95182944 -132341634 + AluJb SINE Alu 1 302 -10 913 278 32 24 chr3 95183149 95183401 -132341177 - MIR SINE MIR -4 258 5 27 0 0 0 chr3 95183588 95183615 -132340963 + AT_rich Low_complexity Low_complexity 1 27 0 22 56 0 0 chr3 95183747 95183783 -132340795 + AT_rich Low_complexity Low_complexity 1 36 0 1428 157 19 74 chr3 95184372 95184697 -132339881 - AluJb SINE Alu 0 312 6 21 71 0 0 chr3 95184816 95184858 -132339720 + AT_rich Low_complexity Low_complexity 1 42 0 301 314 29 43 chr3 95185719 95185859 -132338719 - MIR SINE MIR -51 211 74 388 308 59 12 chr3 95185874 95186043 -132338535 - MER69A DNA AcHobo 0 177 1 256 274 47 28 chr3 95186508 95186614 -132337964 + MLT1L LTR MaLR 164 271 -344 492 312 74 0 chr3 95186662 95186851 -132337727 + MLT1L LTR MaLR 349 551 -64 1606 131 7 21 chr3 95186918 95187201 -132337377 + L1MA2 LINE L1 6026 6304 0 22 56 0 0 chr3 95188687 95188723 -132335855 + AT_rich Low_complexity Low_complexity 1 36 0 198 0 0 0 chr3 95189057 95189079 -132335499 + (T)n Simple_repeat Simple_repeat 1 22 0 2405 64 0 10 chr3 95189102 95189413 -132335165 + AluY SINE Alu 1 308 -3 1360 68 0 0 chr3 95189415 95189592 -132334986 + AluY SINE Alu 135 311 0 1020 178 93 27 chr3 95189600 95189859 -132334719 - AluJo SINE Alu -36 276 1 888 194 11 26 chr3 95190327 95190518 -132334060 + MER5A DNA MER1_type 1 188 -1 498 307 16 62 chr3 95190521 95190654 -132333924 + MIR SINE MIR 18 137 -125 2464 105 5 27 chr3 95190654 95191026 -132333552 - THE1B LTR MaLR 0 364 1 498 307 16 62 chr3 95191026 95191136 -132333442 + MIR SINE MIR 137 250 -12 286 328 210 0 chr3 95192387 95192506 -132332072 - MER91A DNA MER1_type -44 152 9 231 280 0 0 chr3 95192516 95192566 -132332012 - MER91A DNA MER1_type -143 53 4 223 326 92 0 chr3 95192588 95192686 -132331892 - MIR3 SINE MIR -11 197 91 226 278 135 24 chr3 95193166 95193292 -132331286 - MIR SINE MIR -4 258 119 248 326 167 21 chr3 95193757 95193901 -132330677 + MIR3 SINE MIR 43 207 -1 983 168 102 5 chr3 95194233 95194430 -132330148 + L1PB4 LINE L1 5939 6154 -2 237 263 50 50 chr3 95194512 95194592 -132329986 + L2 LINE L2 3234 3313 0 2043 157 0 0 chr3 95195024 95195329 -132329249 + AluSx SINE Alu 1 305 -7 485 255 214 0 chr3 95195836 95195981 -132328597 + MER5B DNA MER1_type 2 177 -1 294 371 51 46 chr3 95196459 95196852 -132327726 - L2 LINE L2 -989 2325 1931 7418 88 14 0 chr3 95197259 95199076 -132325502 - L1PA7 LINE L1 -3 6151 4315 5372 86 30 0 chr3 95199078 95199833 -132324745 + L1PA7 LINE L1 3544 4321 -1825 655 279 16 70 chr3 95200568 95200812 -132323766 - MIR SINE MIR -26 236 6 2002 108 7 0 chr3 95200971 95201249 -132323329 + AluSx SINE Alu 1 280 -32 279 0 0 0 chr3 95201250 95201281 -132323297 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 189 328 15 0 chr3 95201330 95201397 -132323181 - L2 LINE L2 -2 3311 3244 26 82 0 0 chr3 95202087 95202148 -132322430 + AT_rich Low_complexity Low_complexity 1 61 0 22 0 0 0 chr3 95202900 95202922 -132321656 + AT_rich Low_complexity Low_complexity 1 22 0 2214 73 0 0 chr3 95202930 95203205 -132321373 + AluY SINE Alu 20 294 -17 200 231 115 0 chr3 95203711 95203763 -132320815 - MIR SINE MIR -6 256 199 351 281 33 8 chr3 95204288 95204409 -132320169 + MIR SINE MIR 107 230 -32 456 299 150 6 chr3 95204571 95204738 -132319840 + MIR SINE MIR 2 192 -70 371 271 21 7 chr3 95205218 95205358 -132319220 + MER103 DNA DNA 6 147 -19 321 231 104 71 chr3 95205369 95205551 -132319027 - L1ME4a LINE L1 -152 5969 5782 4848 208 34 12 chr3 95205631 95206442 -132318136 + L1P4 LINE L1 4151 5007 -1159 1388 220 7 10 chr3 95206442 95206733 -132317845 - AluJo SINE Alu -18 294 5 4848 208 34 12 chr3 95206733 95207267 -132317311 + L1P4 LINE L1 5007 5528 -638 6969 224 12 65 chr3 95207267 95208565 -132316013 + L1 LINE L1 1470 2836 -3310 2607 3 0 26 chr3 95208565 95208870 -132315708 + L1PA2 LINE L1 5854 6155 0 6969 224 12 65 chr3 95208870 95209955 -132314623 + L1 LINE L1 2836 3473 -2673 1997 131 26 26 chr3 95209955 95210267 -132314311 + AluSx SINE Alu 1 312 0 6969 224 12 65 chr3 95210267 95211107 -132313471 + L1 LINE L1 3473 4356 -1790 45 34 0 0 chr3 95212111 95212170 -132312408 + AT_rich Low_complexity Low_complexity 1 59 0 22 35 0 0 chr3 95213066 95213095 -132311483 + AT_rich Low_complexity Low_complexity 1 29 0 395 254 18 27 chr3 95213195 95213305 -132311273 + MIR3 SINE MIR 92 200 -8 22 0 0 0 chr3 95214979 95215001 -132309577 + AT_rich Low_complexity Low_complexity 1 22 0 1365 182 4 4 chr3 95216617 95216864 -132307714 + AluJo SINE Alu 40 286 -26 429 141 14 0 chr3 95217062 95217133 -132307445 - AluJ/FLAM SINE Alu -238 74 3 1707 150 45 26 chr3 95217232 95217544 -132307034 - THE1B LTR MaLR 0 364 39 496 305 58 0 chr3 95217570 95217760 -132306818 + Charlie2 DNA MER1_type 95 295 -2567 515 292 52 4 chr3 95217847 95218080 -132306498 + Charlie2 DNA MER1_type 2500 2743 -119 1863 126 10 29 chr3 95218970 95219280 -132305298 - AluJo SINE Alu -6 306 3 246 116 0 0 chr3 95220049 95220092 -132304486 + (TG)n Simple_repeat Simple_repeat 1 43 0 1937 143 6 22 chr3 95220328 95220642 -132303936 + AluSq SINE Alu 1 309 -4 231 114 0 0 chr3 95220847 95220882 -132303696 + (CA)n Simple_repeat Simple_repeat 2 36 0 207 288 68 27 chr3 95220905 95220978 -132303600 + L2 LINE L2 3199 3274 -39 216 0 0 0 chr3 95221296 95221320 -132303258 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 218 180 40 0 chr3 95221395 95221445 -132303133 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr3 95221703 95221725 -132302853 + AT_rich Low_complexity Low_complexity 1 22 0 716 319 109 49 chr3 95221814 95222024 -132302554 + L2 LINE L2 2431 2627 -687 1564 182 7 19 chr3 95222024 95222332 -132302246 - AluJo SINE Alu -8 304 1 716 319 109 49 chr3 95222332 95222635 -132301943 + L2 LINE L2 2627 2975 -339 351 314 36 36 chr3 95222908 95223045 -132301533 - L2 LINE L2 -15 3298 3162 1425 129 0 13 chr3 95223768 95224001 -132300577 + L1PA8 LINE L1 5940 6169 -3 27 62 0 0 chr3 95224883 95224931 -132299647 + AT_rich Low_complexity Low_complexity 1 48 0 236 224 0 17 chr3 95225183 95225241 -132299337 + L2 LINE L2 3216 3272 0 238 371 98 0 chr3 95226030 95226173 -132298405 + MIR SINE MIR 103 259 -3 251 140 20 0 chr3 95226179 95226229 -132298349 + (TTA)n Simple_repeat Simple_repeat 2 52 0 210 341 12 12 chr3 95226255 95226340 -132298238 + MIR3 SINE MIR 116 200 -8 2229 84 7 3 chr3 95227015 95227356 -132297222 - AluY SINE Alu 0 311 1 25 65 0 0 chr3 95229004 95229050 -132295528 + AT_rich Low_complexity Low_complexity 1 46 0 432 0 0 0 chr3 95229057 95229105 -132295473 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1881 113 4 0 chr3 95229112 95229368 -132295210 - AluSp SINE Alu -56 257 1 27 0 0 0 chr3 95230132 95230159 -132294419 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr3 95230535 95230556 -132294022 + AT_rich Low_complexity Low_complexity 1 21 0 2345 101 0 0 chr3 95232206 95232504 -132292074 - AluSc SINE Alu -11 298 1 263 291 53 60 chr3 95232511 95232662 -132291916 - L2 LINE L2 -52 3261 3112 1855 306 91 17 chr3 95232669 95233549 -132291029 - L2 LINE L2 -129 3184 2237 361 257 91 31 chr3 95233772 95233957 -132290621 + MLT1I LTR MaLR 266 409 0 1111 254 128 12 chr3 95233957 95234363 -132290215 - L2 LINE L2 -1080 2234 1782 23 0 0 0 chr3 95236351 95236374 -132288204 + AT_rich Low_complexity Low_complexity 1 23 0 2171 112 3 6 chr3 95236760 95237073 -132287505 + AluSp SINE Alu 2 313 0 204 214 0 0 chr3 95237124 95237180 -132287398 + (TTAAA)n Simple_repeat Simple_repeat 1 56 0 463 264 0 9 chr3 95237376 95237486 -132287092 - MIR SINE MIR -1 261 153 426 269 19 0 chr3 95238813 95238921 -132285657 - MER81 DNA DNA 0 114 5 22 0 0 0 chr3 95239826 95239848 -132284730 + AT_rich Low_complexity Low_complexity 1 22 0 285 370 11 39 chr3 95239858 95240065 -132284513 + MIR3 SINE MIR 11 209 -53 712 222 146 12 chr3 95240456 95240627 -132283951 + MER105 DNA DNA 10 203 -1 215 333 114 15 chr3 95240933 95241065 -132283513 + L2 LINE L2 2905 3049 -264 1071 198 5 5 chr3 95242955 95243172 -132281406 - AluJb SINE Alu -14 298 82 237 298 145 16 chr3 95245419 95245543 -132279035 + MIR SINE MIR 72 211 -51 239 77 0 26 chr3 95249297 95249336 -132275242 + (TTCTCC)n Simple_repeat Simple_repeat 5 42 0 25 118 0 0 chr3 95249507 95249651 -132274927 + AT_rich Low_complexity Low_complexity 1 144 0 2415 45 3 0 chr3 95249898 95250187 -132274391 - AluY SINE Alu -21 290 1 28 99 0 0 chr3 95250244 95250335 -132274243 + AT_rich Low_complexity Low_complexity 1 91 0 192 77 0 0 chr3 95250614 95250640 -132273938 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1886 144 0 19 chr3 95252826 95253138 -132271440 - AluSx SINE Alu -6 306 1 459 241 66 52 chr3 95253757 95253969 -132270609 - MER20 DNA MER1_type -4 215 1 1537 172 3 110 chr3 95254088 95254478 -132270100 - MER7A DNA MER2_type 0 346 1 21 0 0 0 chr3 95254576 95254597 -132269981 + AT_rich Low_complexity Low_complexity 1 21 0 588 262 148 0 chr3 95254597 95254780 -132269798 - MIR SINE MIR -31 231 22 6573 41 0 5 chr3 95256421 95257219 -132267359 - L1PA5 LINE L1 0 6154 5361 24 32 0 0 chr3 95257552 95257583 -132266995 + AT_rich Low_complexity Low_complexity 1 31 0 289 304 56 87 chr3 95257598 95257864 -132266714 + L1ME LINE L1 5569 5826 -295 228 306 35 0 chr3 95257999 95258084 -132266494 + L1MC4 LINE L1 6615 6702 -1340 228 312 32 32 chr3 95258269 95258362 -132266216 - L2 LINE L2 -7 3306 3214 801 137 0 0 chr3 95258622 95258753 -132265825 + (TCCC)n Simple_repeat Simple_repeat 2 132 0 26 30 0 0 chr3 95258963 95258996 -132265582 + AT_rich Low_complexity Low_complexity 1 33 0 384 357 127 53 chr3 95260810 95260946 -132263632 - L2 LINE L2 -1 3271 3147 1940 105 80 42 chr3 95260946 95261307 -132263271 + THE1C LTR MaLR 1 375 0 384 357 127 53 chr3 95261307 95261548 -132263030 - L2 LINE L2 -125 3147 2866 2150 97 3 16 chr3 95261696 95262005 -132262573 + AluSx SINE Alu 1 305 -7 290 342 134 22 chr3 95262232 95262507 -132262071 - L2 LINE L2 -927 2387 2082 612 289 54 10 chr3 95262521 95262725 -132261853 + MIR SINE MIR 49 261 -1 334 191 235 26 chr3 95263584 95263699 -132260879 + L2 LINE L2 3175 3313 0 22 35 0 0 chr3 95264923 95264952 -132259626 + AT_rich Low_complexity Low_complexity 1 29 0 270 0 0 0 chr3 95265482 95265512 -132259066 + (T)n Simple_repeat Simple_repeat 1 30 0 285 286 98 98 chr3 95268237 95268482 -132256096 - MIR SINE MIR 0 262 18 558 100 0 0 chr3 95268753 95268833 -132255745 + MADE1 DNA Mariner 1 80 0 207 100 0 0 chr3 95269169 95269199 -132255379 + (CA)n Simple_repeat Simple_repeat 1 30 0 239 349 69 50 chr3 95269251 95269469 -132255109 - L2 LINE L2 -194 3078 2857 28 61 0 0 chr3 95269867 95269916 -132254662 + AT_rich Low_complexity Low_complexity 1 49 0 395 298 48 68 chr3 95270899 95270953 -132253625 + LTR16C LTR ERVL 160 214 -277 306 73 0 0 chr3 95270953 95270994 -132253584 + (TG)n Simple_repeat Simple_repeat 2 42 0 395 298 48 68 chr3 95270994 95271191 -132253387 + LTR16C LTR ERVL 214 406 -85 198 150 0 0 chr3 95271299 95271339 -132253239 + (TTAAA)n Simple_repeat Simple_repeat 4 43 0 2415 45 3 0 chr3 95271610 95271899 -132252679 + AluY SINE Alu 1 290 -21 25 118 0 0 chr3 95272146 95272290 -132252288 + AT_rich Low_complexity Low_complexity 1 144 0 239 77 0 26 chr3 95272461 95272500 -132252078 + (GGAGAA)n Simple_repeat Simple_repeat 5 42 0 270 0 0 0 chr3 95276385 95276415 -132248163 + (T)n Simple_repeat Simple_repeat 1 30 0 2051 140 0 9 chr3 95276644 95276959 -132247619 + AluSq SINE Alu 1 312 -1 1013 111 6 17 chr3 95276966 95277146 -132247432 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 198 103 0 0 chr3 95277149 95277178 -132247400 + (GAAA)n Simple_repeat Simple_repeat 1 29 0 264 167 67 0 chr3 95277320 95277380 -132247198 + L1MA9 LINE L1 6211 6274 -38 262 336 29 29 chr3 95277450 95277554 -132247024 - MER5A DNA MER1_type -26 163 60 463 296 37 31 chr3 95277691 95277853 -132246725 + MIR SINE MIR 14 176 -86 863 227 97 16 chr3 95278121 95278368 -132246210 + AluJo SINE Alu 39 305 -7 30 45 0 0 chr3 95279917 95279961 -132244617 + AT_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr3 95280081 95280103 -132244475 + AT_rich Low_complexity Low_complexity 1 22 0 262 303 75 58 chr3 95281486 95281780 -132242798 + L2 LINE L2 2387 2685 -629 820 137 8 0 chr3 95281798 95281922 -132242656 + FLAM_C SINE Alu 2 126 -7 1345 191 62 4 chr3 95282447 95282875 -132241703 - MLT2B2 LTR ERVL -1 514 1 288 284 0 37 chr3 95282928 95283009 -132241569 + MIR SINE MIR 67 144 -118 991 164 18 96 chr3 95283589 95283809 -132240769 - AluJo SINE Alu -23 289 87 324 48 0 0 chr3 95283810 95283852 -132240726 + (TG)n Simple_repeat Simple_repeat 2 43 0 293 243 45 0 chr3 95284600 95284711 -132239867 + (TA)n Simple_repeat Simple_repeat 1 116 0 258 136 0 0 chr3 95284804 95284848 -132239730 + (TCC)n Simple_repeat Simple_repeat 2 45 0 234 0 0 0 chr3 95285218 95285244 -132239334 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2287 101 0 0 chr3 95287374 95287681 -132236897 + AluSq SINE Alu 1 307 -6 255 292 139 15 chr3 95287683 95287820 -132236758 + MIR SINE MIR 32 185 -77 273 376 40 54 chr3 95288053 95288202 -132236376 - L2 LINE L2 -9 3263 3117 355 320 152 61 chr3 95288325 95288827 -132235751 - L2 LINE L2 -47 3225 2770 309 26 0 0 chr3 95288827 95288865 -132235713 + (TTA)n Simple_repeat Simple_repeat 1 38 0 1841 113 0 90 chr3 95288869 95289179 -132235399 - AluSx SINE Alu -30 282 1 355 320 152 61 chr3 95289179 95289432 -132235146 - L2 LINE L2 -504 2768 2410 217 313 0 0 chr3 95289600 95289664 -132234914 - L2 LINE L2 -13 3259 3196 744 171 0 91 chr3 95289723 95289910 -132234668 - MER20 DNA MER1_type -2 217 48 23 0 0 0 chr3 95290653 95290676 -132233902 + AT_rich Low_complexity Low_complexity 1 23 0 426 355 115 25 chr3 95290697 95291097 -132233481 - L3b LINE CR1 -10 1573 1138 213 176 40 14 chr3 95291147 95291221 -132233357 + CT-rich Low_complexity Low_complexity 2 77 0 309 26 0 0 chr3 95291363 95291401 -132233177 + (TG)n Simple_repeat Simple_repeat 1 38 0 244 278 0 0 chr3 95291680 95291770 -132232808 + L1MC4 LINE L1 6614 6703 -1339 219 69 0 0 chr3 95291773 95291802 -132232776 + (TA)n Simple_repeat Simple_repeat 2 30 0 402 287 107 7 chr3 95291956 95292106 -132232472 + MIR3 SINE MIR 39 203 -5 420 348 48 16 chr3 95292421 95292671 -132231907 + L3b LINE CR1 1156 1413 -170 2120 126 0 3 chr3 95292784 95293094 -132231484 - AluY SINE Alu -2 309 1 1268 56 0 0 chr3 95293157 95293319 -132231259 - L1PA5 LINE L1 -1 6153 5992 21 0 0 0 chr3 95294244 95294265 -132230313 + AT_rich Low_complexity Low_complexity 1 21 0 327 293 203 0 chr3 95294464 95294587 -132229991 + MER5A DNA MER1_type 39 186 -3 21 36 0 0 chr3 95294790 95294818 -132229760 + AT_rich Low_complexity Low_complexity 1 28 0 259 263 0 12 chr3 95295003 95295083 -132229495 + T-rich Low_complexity Low_complexity 3 81 0 1896 146 0 19 chr3 95295867 95296176 -132228402 + AluJb SINE Alu 1 303 -9 27 62 0 0 chr3 95296370 95296418 -132228160 + AT_rich Low_complexity Low_complexity 1 48 0 213 200 40 0 chr3 95298387 95298462 -132226116 + (TA)n Simple_repeat Simple_repeat 2 79 0 1675 174 0 20 chr3 95300507 95300801 -132223777 + AluJo SINE Alu 1 288 -24 2476 54 3 0 chr3 95301866 95302163 -132222415 - AluY SINE Alu -13 298 1 334 304 23 23 chr3 95302282 95302453 -132222125 + (TATATG)n Simple_repeat Simple_repeat 6 176 0 205 209 23 0 chr3 95303319 95303362 -132221216 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 181 291 286 22 chr3 95303660 95303842 -132220736 + L2 LINE L2 2431 2660 -654 1332 258 130 13 chr3 95303910 95304364 -132220214 - L1ME3 LINE L1 -6 6156 5650 821 274 105 34 chr3 95304408 95304846 -132219732 - L1ME3 LINE L1 -875 5271 4803 239 237 0 5 chr3 95304846 95304914 -132219664 - Alu SINE Alu -121 182 137 546 211 76 116 chr3 95304915 95305285 -132219293 - L1ME3 LINE L1 -1398 4748 4394 948 306 37 0 chr3 95305306 95305659 -132218919 + L1M4 LINE L1 4004 4369 -1777 301 233 48 0 chr3 95305679 95305782 -132218796 + (TATATG)n Simple_repeat Simple_repeat 3 110 0 * 429 288 11 6 chr3 95305716 95305893 -132218685 + (TA)n Simple_repeat Simple_repeat 1 178 0 331 225 22 22 chr3 95305894 95305983 -132218595 - L1MC4 LINE L1 -1340 6702 6614 304 200 74 63 chr3 95305965 95306060 -132218518 + L1MC4 LINE L1 6614 6709 -1333 * 488 333 58 0 chr3 95306154 95306361 -132218217 - L1ME3 LINE L1 -1947 4199 3981 2183 54 43 0 chr3 95306535 95306815 -132217763 - AluY SINE Alu -19 292 1 248 423 31 35 chr3 95306864 95307091 -132217487 + L2 LINE L2 3027 3252 -20 44247 34 1 3 chr3 95307091 95313253 -132211325 - L1PA3 LINE L1 0 6155 9 23 0 0 0 chr3 95313653 95313676 -132210902 + AT_rich Low_complexity Low_complexity 1 23 0 314 181 84 12 chr3 95314417 95314500 -132210078 + MIR SINE MIR 66 154 -108 333 220 44 33 chr3 95314820 95314911 -132209667 - L1MC4 LINE L1 -1338 6704 6613 187 56 93 0 chr3 95314911 95314965 -132209613 + (TA)n Simple_repeat Simple_repeat 2 60 0 24 0 0 0 chr3 95314993 95315017 -132209561 + AT_rich Low_complexity Low_complexity 1 24 0 256 279 120 20 chr3 95315158 95315307 -132209271 - MIR3 SINE MIR -24 238 58 778 236 5 46 chr3 95315310 95315526 -132209052 - MER3 DNA MER1_type -1 208 2 222 200 0 0 chr3 95315533 95315573 -132209005 - MIR SINE MIR -219 43 4 1624 167 3 49 chr3 95315816 95316140 -132208438 - AluJo SINE Alu -3 309 1 255 246 66 0 chr3 95316361 95316422 -132208156 - MIR SINE MIR -136 126 62 2071 99 32 23 chr3 95320824 95321167 -132203411 + L1MA3 LINE L1 5960 6305 0 25 65 0 0 chr3 95321242 95321288 -132203290 + AT_rich Low_complexity Low_complexity 1 46 0 2481 99 13 13 chr3 95322152 95322527 -132202051 - THE1C LTR MaLR 0 375 1 427 266 80 0 chr3 95322613 95322726 -132201852 + MIR SINE MIR 53 174 -88 1231 327 66 33 chr3 95322792 95323519 -132201059 + L3 LINE CR1 609 1359 -218 186 358 0 0 chr3 95324629 95324696 -132199882 - L2 LINE L2 -5 3308 3242 * 393 338 4 52 chr3 95324683 95324914 -132199664 - MIR SINE MIR -27 235 16 252 274 24 0 chr3 95326966 95327050 -132197528 - L1M4 LINE L1 -1896 4250 4165 249 317 10 58 chr3 95327776 95327880 -132196698 - MER81 DNA DNA -15 99 1 2239 103 0 0 chr3 95328217 95328519 -132196059 + AluSx SINE Alu 1 302 -10 22 0 0 0 chr3 95328759 95328781 -132195797 + AT_rich Low_complexity Low_complexity 1 22 0 195 330 43 21 chr3 95328920 95329014 -132195564 - MER5B DNA MER1_type -79 99 4 1931 117 33 0 chr3 95329856 95330129 -132194449 + AluSx SINE Alu 1 282 -30 339 65 0 0 chr3 95331499 95331545 -132193033 + (GA)n Simple_repeat Simple_repeat 1 46 0 209 340 21 0 chr3 95331702 95331787 -132192791 - L2 LINE L2 -58 3255 3166 2448 72 0 3 chr3 95331787 95332092 -132192486 + AluY SINE Alu 1 304 -7 322 143 16 0 chr3 95333241 95333304 -132191274 + L1PB2 LINE L1 6082 6145 -6 22 35 0 0 chr3 95333495 95333524 -132191054 + AT_rich Low_complexity Low_complexity 1 29 0 4292 189 31 25 chr3 95334442 95335332 -132189246 + MER54A LTR ERVL 1 896 -5 241 368 26 0 chr3 95337548 95337665 -132186913 - MER94 DNA DNA -3 131 12 338 281 16 16 chr3 95340201 95340329 -132184249 + T-rich Low_complexity Low_complexity 1 128 0 210 203 14 14 chr3 95342010 95342079 -132182499 + (TA)n Simple_repeat Simple_repeat 2 70 0 556 291 35 61 chr3 95344012 95344242 -132180336 - L2 LINE L2 0 3313 3090 216 171 0 0 chr3 95344278 95344319 -132180259 + (TG)n Simple_repeat Simple_repeat 2 42 0 1095 228 5 5 chr3 95345080 95345304 -132179274 + MER58A DNA MER1_type 1 224 0 754 268 46 34 chr3 95347116 95347304 -132177274 + MIR SINE MIR 21 214 -48 252 0 0 0 chr3 95347304 95347332 -132177246 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 754 268 46 34 chr3 95347332 95347382 -132177196 + MIR SINE MIR 214 262 0 22 0 0 0 chr3 95348518 95348540 -132176038 + AT_rich Low_complexity Low_complexity 1 22 0 1549 154 79 22 chr3 95348970 95349265 -132175313 - AluSx SINE Alu 0 310 1 1515 126 5 0 chr3 95349280 95349494 -132175084 - AluSg/x SINE Alu -15 295 81 1774 162 13 23 chr3 95349543 95349851 -132174727 - AluJo SINE Alu -6 306 2 24 67 0 0 chr3 95349851 95349896 -132174682 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr3 95350006 95350029 -132174549 + AT_rich Low_complexity Low_complexity 1 23 0 656 227 6 0 chr3 95350080 95350256 -132174322 + (TA)n Simple_repeat Simple_repeat 2 178 0 840 221 40 0 chr3 95350819 95351018 -132173560 - MER3 DNA MER1_type 0 209 3 27 62 0 0 chr3 95351376 95351424 -132173154 + AT_rich Low_complexity Low_complexity 1 48 0 364 91 30 0 chr3 95351468 95351534 -132173044 + (TA)n Simple_repeat Simple_repeat 2 69 0 26 0 0 0 chr3 95352850 95352876 -132171702 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 95353083 95353104 -132171474 + AT_rich Low_complexity Low_complexity 1 21 0 29 70 0 0 chr3 95354165 95354222 -132170356 + AT_rich Low_complexity Low_complexity 1 57 0 24 67 0 0 chr3 95357025 95357070 -132167508 + AT_rich Low_complexity Low_complexity 1 45 0 2666 226 34 16 chr3 95358113 95358736 -132165842 + MER82 DNA MER2_type 10 643 -10 359 21 21 0 chr3 95358750 95358798 -132165780 + (GTTTG)n Simple_repeat Simple_repeat 2 50 0 1165 176 5 41 chr3 95358814 95359035 -132165543 - AluJo SINE Alu -99 213 1 2327 110 0 0 chr3 95360187 95360486 -132164092 + AluSq SINE Alu 1 299 -14 411 254 30 15 chr3 95360582 95360716 -132163862 + MER103 DNA DNA 12 147 -19 348 64 0 0 chr3 95361656 95361703 -132162875 + (TG)n Simple_repeat Simple_repeat 1 47 0 188 315 41 0 chr3 95362868 95362941 -132161637 + L2 LINE L2 2218 2293 -1021 512 299 204 8 chr3 95364100 95364458 -132160120 - L1ME4a LINE L1 -2 6119 5692 806 338 36 36 chr3 95364597 95365349 -132159229 + L2 LINE L2 2472 3229 -43 597 253 159 89 chr3 95365350 95365903 -132158675 - MLT1G1 LTR MaLR -1 594 3 231 261 28 33 chr3 95367387 95367534 -132157044 + (TA)n Simple_repeat Simple_repeat 2 149 -31 207 0 0 0 chr3 95367534 95367557 -132157021 + (CA)n Simple_repeat Simple_repeat 2 24 0 231 261 28 33 chr3 95367557 95367589 -132156989 + (TA)n Simple_repeat Simple_repeat 149 180 0 434 313 112 5 chr3 95367593 95367807 -132156771 + MIR SINE MIR 14 250 -12 22 35 0 0 chr3 95367817 95367846 -132156732 + AT_rich Low_complexity Low_complexity 1 29 0 2016 117 24 0 chr3 95367911 95368202 -132156376 - AluSg SINE Alu -12 298 1 2377 101 0 0 chr3 95368406 95368703 -132155875 - AluSx SINE Alu -13 299 3 21 0 0 0 chr3 95369700 95369721 -132154857 + AT_rich Low_complexity Low_complexity 1 21 0 2556 111 35 0 chr3 95376409 95376786 -132147792 - MLT1B LTR MaLR 0 390 1 317 278 51 34 chr3 95378730 95378906 -132145672 + L1MC4a LINE L1 5706 5884 -1924 439 381 51 27 chr3 95379365 95379851 -132144727 + L2 LINE L2 2199 2696 -618 1667 182 32 0 chr3 95380035 95380315 -132144263 + AluJb SINE Alu 1 289 -23 261 0 0 0 chr3 95380391 95380420 -132144158 + (TG)n Simple_repeat Simple_repeat 2 30 0 277 287 144 29 chr3 95380671 95380845 -132143733 + MER117 DNA MER1_type 2 195 -2 1861 182 0 0 chr3 95380928 95381230 -132143348 + AluJb SINE Alu 1 302 -10 189 382 0 0 chr3 95381806 95381861 -132142717 - L2 LINE L2 -107 3165 3111 187 340 75 6 chr3 95381895 95382054 -132142524 - L2 LINE L2 -232 3040 2871 891 208 0 0 chr3 95382077 95382231 -132142347 + AluJb SINE Alu 110 263 -49 676 232 89 32 chr3 95382904 95383094 -132141484 + MER63A DNA MER1_type 9 209 -1 2177 112 0 3 chr3 95384072 95384384 -132140194 + AluSg SINE Alu 1 311 0 228 360 99 27 chr3 95384878 95384989 -132139589 - L2 LINE L2 -17 3255 3137 306 357 67 22 chr3 95385505 95385774 -132138804 - L2 LINE L2 -835 2479 2199 197 361 0 0 chr3 95385800 95385861 -132138717 - L2 LINE L2 -62 3251 3191 246 32 0 0 chr3 95385917 95385928 -132138650 + (CA)n Simple_repeat Simple_repeat 1 11 -476 2549 153 7 19 chr3 95385928 95386358 -132138220 - MSTB LTR MaLR -1 425 1 246 32 0 0 chr3 95386358 95386373 -132138205 + (CA)n Simple_repeat Simple_repeat 10 487 0 246 32 0 0 chr3 95386373 95386404 -132138174 + (CA)n Simple_repeat Simple_repeat 2 32 0 215 367 70 15 chr3 95386660 95386919 -132137659 - L2 LINE L2 -1433 1881 1609 180 315 0 74 chr3 95387088 95387196 -132137382 - L2 LINE L2 -2766 548 449 239 290 218 8 chr3 95387715 95387839 -132136739 - MIR SINE MIR -80 182 33 27 49 0 0 chr3 95389419 95389460 -132135118 + AT_rich Low_complexity Low_complexity 1 41 0 593 280 86 5 chr3 95392077 95392263 -132132315 + MIR SINE MIR 5 205 -57 2164 118 6 16 chr3 95393427 95393742 -132130836 - AluSx SINE Alu 0 312 1 392 221 74 0 chr3 95393969 95394064 -132130514 - LTR16C LTR ERVL -2 489 388 258 261 33 72 chr3 95394500 95394653 -132129925 + HsTC2c DNA Tc2 134 280 -449 618 290 93 14 chr3 95394696 95394975 -132129603 + HsTC2c DNA Tc2 356 656 -73 1506 206 21 43 chr3 95395085 95395245 -132129333 + MLT1A1 LTR MaLR 1 163 -202 198 0 0 0 chr3 95395245 95395267 -132129311 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 1506 206 21 43 chr3 95395267 95395479 -132129099 + MLT1A1 LTR MaLR 163 365 0 2328 115 18 39 chr3 95396014 95396397 -132128181 - THE1C LTR MaLR 0 375 1 649 144 79 0 chr3 95397266 95397405 -132127173 + L1MA7 LINE L1 6142 6291 0 287 353 101 7 chr3 95398358 95398497 -132126081 - L2 LINE L2 0 3272 3121 3333 60 9 9 chr3 95399521 95399969 -132124609 + LTR7 LTR ERV1 1 448 -2 19179 96 11 16 chr3 95399971 95402983 -132121595 + HERVH LTR ERV1 1 2995 -4718 949 113 7 0 chr3 95402962 95403112 -132121466 + HERVH LTR ERV1 3140 3290 -4423 * 3190 117 0 6 chr3 95403102 95403607 -132120971 + HERVH LTR ERV1 3492 3993 -3720 3307 118 2 2 chr3 95403609 95404108 -132120470 + HERVH LTR ERV1 4488 4986 -2727 297 0 0 0 chr3 95404109 95404142 -132120436 + (TCTCCC)n Simple_repeat Simple_repeat 1 33 0 5425 73 37 33 chr3 95404142 95404951 -132119627 + SVA Other Other 57 868 -518 5762 67 84 42 chr3 95405109 95406142 -132118436 + SVA Other Other 433 1412 0 996 180 0 0 chr3 95406144 95406322 -132118256 + HERVH LTR ERV1 4972 5149 -2564 818 150 21 77 chr3 95406323 95406556 -132118022 + HERVH LTR ERV1 5600 5819 -1894 2099 114 45 16 chr3 95406559 95406935 -132117643 + HERVH LTR ERV1 7327 7713 0 3334 64 2 15 chr3 95406935 95407389 -132117189 + LTR7 LTR ERV1 1 448 -2 903 236 190 38 chr3 95407476 95407977 -132116601 + MLT1G LTR MaLR 1 577 -13 274 299 0 0 chr3 95408674 95408741 -132115837 - MIR SINE MIR -64 144 78 1404 193 10 40 chr3 95408795 95409095 -132115483 + AluJb SINE Alu 1 291 -21 23 68 0 0 chr3 95409151 95409195 -132115383 + AT_rich Low_complexity Low_complexity 1 44 0 550 324 183 7 chr3 95409794 95410330 -132114248 + L2 LINE L2 2665 3305 -8 877 267 113 31 chr3 95410727 95411177 -132113401 + L2 LINE L2 1279 1765 -1549 750 169 14 7 chr3 95411193 95411335 -132113243 - Tigger3(Golem) DNA MER2_type -2 3027 2885 518 216 171 11 chr3 95411412 95411588 -132112990 + L2 LINE L2 3106 3309 -4 314 390 37 0 chr3 95411658 95411848 -132112730 - MIR SINE MIR -60 202 6 263 179 15 0 chr3 95412037 95412104 -132112474 + CT-rich Low_complexity Low_complexity 2 69 0 3936 168 7 11 chr3 95412567 95413275 -132111303 + MER50 LTR ERV1 1 705 -29 1147 212 102 60 chr3 95413370 95413831 -132110747 + MER39 LTR ERV1 67 707 0 21 0 0 0 chr3 95414232 95414253 -132110325 + AT_rich Low_complexity Low_complexity 1 21 0 262 303 35 7 chr3 95414460 95414605 -132109973 + (TATATG)n Simple_repeat Simple_repeat 2 150 0 317 123 0 18 chr3 95414608 95414665 -132109913 + (CATATA)n Simple_repeat Simple_repeat 3 58 0 381 93 0 0 chr3 95414739 95414793 -132109785 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 344 264 101 23 chr3 95415039 95415346 -132109232 + HAL1 LINE L1 2044 2374 -133 1009 249 56 36 chr3 95415419 95415935 -132108643 + MER34 LTR ERV1 1 707 0 290 316 81 6 chr3 95416110 95416284 -132108294 + MIR SINE MIR 48 234 -28 2271 121 0 0 chr3 95417604 95417917 -132106661 - AluSq SINE Alu 0 313 1 25 0 0 0 chr3 95418071 95418096 -132106482 + AT_rich Low_complexity Low_complexity 1 25 0 3723 147 18 49 chr3 95418294 95419027 -132105551 + MER50 LTR ERV1 1 710 -24 454 310 59 20 chr3 95419565 95419768 -132104810 + MIR SINE MIR 50 260 -2 1854 155 181 12 chr3 95420478 95420892 -132103686 - MER31A LTR ERV1 0 485 2 21 57 0 0 chr3 95420988 95421023 -132103555 + AT_rich Low_complexity Low_complexity 1 35 0 277 276 26 0 chr3 95421366 95421442 -132103136 - MER5B DNA MER1_type -99 79 2 561 294 63 17 chr3 95422444 95422682 -132101896 + MLT1J1 LTR MaLR 68 316 -130 22 0 0 0 chr3 95423045 95423067 -132101511 + AT_rich Low_complexity Low_complexity 1 22 0 949 229 53 25 chr3 95423517 95423899 -132100679 + MER39 LTR ERV1 145 706 -1 446 152 93 12 chr3 95424242 95424384 -132100194 + MER34 LTR ERV1 381 707 0 225 231 115 0 chr3 95424930 95425008 -132099570 + MLT1J1 LTR MaLR 356 442 -4 5572 150 15 27 chr3 95425508 95426436 -132098142 + L1MA4 LINE L1 4928 5843 -457 1749 137 150 24 chr3 95426436 95426816 -132097762 + MSTA LTR MaLR 1 428 0 5572 150 15 27 chr3 95426816 95427264 -132097314 + L1MA4 LINE L1 5843 6295 -5 2349 155 52 5 chr3 95427594 95428001 -132096577 + MSTB LTR MaLR 1 426 0 264 371 76 0 chr3 95428063 95428168 -132096410 - L2 LINE L2 -44 3228 3116 1543 210 104 22 chr3 95428596 95428962 -132095616 - MSTD LTR MaLR 0 396 1 31 68 0 0 chr3 95429657 95429716 -132094862 + AT_rich Low_complexity Low_complexity 1 59 0 2037 134 0 13 chr3 95430572 95430879 -132093699 - AluSg SINE Alu -7 303 1 2561 53 0 0 chr3 95431210 95431513 -132093065 + AluY SINE Alu 1 303 -8 215 133 53 133 chr3 95431548 95431623 -132092955 - MIR SINE MIR -56 152 86 183 260 10 115 chr3 95431599 95431695 -132092883 - MIR3 SINE MIR -24 184 99 * 181 345 0 0 chr3 95431970 95432028 -132092550 + L2 LINE L2 531 588 -2726 1069 252 101 40 chr3 95432224 95432700 -132091878 + MLT1D LTR MaLR 1 505 0 233 348 8 12 chr3 95432976 95433086 -132091492 + MIR SINE MIR 3 111 -97 287 143 0 18 chr3 95433886 95433942 -132090636 + (CA)n Simple_repeat Simple_repeat 1 55 0 525 166 0 37 chr3 95433979 95434166 -132090412 + (TA)n Simple_repeat Simple_repeat 1 180 0 322 275 54 97 chr3 95434377 95434683 -132089895 + MLT1I LTR MaLR 1 286 -123 3141 83 18 22 chr3 95434683 95434745 -132089833 - MLT2A1 LTR ERVL 0 444 383 723 54 0 0 chr3 95434745 95434837 -132089741 + (TA)n Simple_repeat Simple_repeat 1 92 0 3141 83 18 22 chr3 95434837 95435220 -132089358 - MLT2A1 LTR ERVL -61 383 1 322 275 54 97 chr3 95435220 95435338 -132089240 + MLT1I LTR MaLR 286 407 -2 207 197 155 42 chr3 95435366 95435437 -132089141 + MIR3 SINE MIR 126 204 -4 1772 146 63 30 chr3 95436314 95436677 -132087901 - THE1C LTR MaLR 0 375 1 1783 176 70 14 chr3 95436680 95437049 -132087529 - MLT1B LTR MaLR 0 390 1 818 259 25 47 chr3 95437049 95437282 -132087296 - MER58B DNA MER1_type -2107 313 87 2435 78 0 13 chr3 95437282 95437589 -132086989 + AluY SINE Alu 1 303 -8 818 259 25 47 chr3 95437589 95437675 -132086903 - MER58B DNA MER1_type -2333 87 1 323 221 71 0 chr3 95439095 95439222 -132085356 - L1ME4a LINE L1 -4 6117 5982 1333 206 42 0 chr3 95439603 95439889 -132084689 + MLT1A1 LTR MaLR 68 365 0 2377 120 22 3 chr3 95440148 95440505 -132084073 + THE1B LTR MaLR 1 364 0 195 377 58 0 chr3 95440623 95440692 -132083886 - L2 LINE L2 0 3313 3241 282 56 0 0 chr3 95440761 95440797 -132083781 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 191 387 4 79 chr3 95441535 95441788 -132082790 - L2 LINE L2 -376 2938 2705 633 171 0 0 chr3 95442217 95442322 -132082256 + AluJ SINE Alu 1 105 -207 3658 122 49 0 chr3 95442322 95442896 -132081682 - LTR43 LTR ERV1 0 602 1 17196 177 55 35 chr3 95442896 95445412 -132079166 - LTR43-int LTR ERV1 0 4798 2180 189 0 0 0 chr3 95445412 95445433 -132079145 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 17196 177 55 35 chr3 95445433 95447647 -132076931 - LTR43-int LTR ERV1 -2618 2180 11 3909 126 12 2 chr3 95447656 95448252 -132076326 - LTR43 LTR ERV1 0 602 1 996 192 5 26 chr3 95448259 95448452 -132076126 + AluJ SINE Alu 108 296 -16 1823 201 25 8 chr3 95448589 95448947 -132075631 + MLT1A1 LTR MaLR 1 364 -1 460 308 32 16 chr3 95448947 95449125 -132075453 + MLT1G3 LTR MaLR 52 232 -298 1154 186 82 12 chr3 95449125 95449412 -132075166 - MLT1D LTR MaLR 0 505 214 28 0 0 0 chr3 95449416 95449444 -132075134 + AT_rich Low_complexity Low_complexity 1 28 0 1516 113 9 4 chr3 95449444 95449675 -132074903 - L1PB1 LINE L1 -4 6147 5916 4507 41 2 0 chr3 95450321 95450863 -132073715 + L1PA2 LINE L1 5517 6059 -96 21 0 0 0 chr3 95451042 95451063 -132073515 + AT_rich Low_complexity Low_complexity 1 21 0 1472 153 4 32 chr3 95452203 95452538 -132072040 + AluJo SINE Alu 42 369 0 1211 244 46 33 chr3 95453010 95453552 -132071026 - L1M4 LINE L1 -5112 1743 1204 26 0 0 0 chr3 95453553 95453579 -132070999 + AT_rich Low_complexity Low_complexity 1 26 0 343 291 94 38 chr3 95453625 95453838 -132070740 - L1M4 LINE L1 -5677 1178 954 413 309 7 7 chr3 95454140 95454292 -132070286 - L1M4 LINE L1 -6616 243 92 257 242 73 65 chr3 95454375 95454499 -132070079 - L1MC4 LINE L1 -364 7678 7554 348 295 185 5 chr3 95454510 95454710 -132069868 + L2 LINE L2 2466 2701 -613 399 167 31 3 chr3 95454759 95454857 -132069721 - L1MB2 LINE L1 -16 6167 6055 606 258 0 0 chr3 95454879 95454999 -132069579 + FLAM_C SINE Alu 1 120 -23 216 0 0 0 chr3 95455009 95455033 -132069545 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 487 365 67 37 chr3 95455172 95455575 -132069003 + L2 LINE L2 2825 3239 -74 182 310 52 0 chr3 95455609 95455667 -132068911 + L2 LINE L2 3227 3287 -26 180 0 0 0 chr3 95456775 95456795 -132067783 + (T)n Simple_repeat Simple_repeat 1 20 0 26 0 0 0 chr3 95457090 95457116 -132067462 + AT_rich Low_complexity Low_complexity 1 26 0 1561 194 77 6 chr3 95457392 95457732 -132066846 - MLT1A1 LTR MaLR -1 364 1 2098 87 7 7 chr3 95457924 95458223 -132066355 - L1PB1 LINE L1 -289 5862 5564 4094 178 14 2 chr3 95458225 95459281 -132065297 + L1P5 LINE L1 4458 5528 -623 466 206 14 110 chr3 95459320 95459466 -132065112 - MLT1D LTR MaLR -359 146 15 397 320 227 0 chr3 95459465 95459637 -132064941 + MLT1G1 LTR MaLR 318 528 -67 * 23 0 0 0 chr3 95460275 95460298 -132064280 + AT_rich Low_complexity Low_complexity 1 23 0 268 136 23 0 chr3 95460710 95460754 -132063824 - THE1B LTR MaLR 0 355 311 * 851 106 0 0 chr3 95460750 95460863 -132063715 - THE1B LTR MaLR -249 115 3 2604 171 36 11 chr3 95460868 95461394 -132063184 - L1MA10 LINE L1 -389 5779 5238 2717 156 17 48 chr3 95461397 95461981 -132062597 + L1MA10 LINE L1 5767 6332 -2 1243 229 68 32 chr3 95462033 95462413 -132062165 + MSTD LTR MaLR 3 396 0 1080 276 88 31 chr3 95462510 95462993 -132061585 + MLT1H LTR MaLR 1 549 0 1341 236 36 0 chr3 95463059 95463368 -132061210 + MER58B DNA MER1_type 12 331 -10 22 80 0 0 chr3 95463913 95463963 -132060615 + AT_rich Low_complexity Low_complexity 1 50 0 1945 144 24 0 chr3 95464253 95464551 -132060027 - AluSx SINE Alu -7 305 1 23 0 0 0 chr3 95465567 95465590 -132058988 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr3 95465768 95465794 -132058784 + (TG)n Simple_repeat Simple_repeat 1 26 0 1889 150 38 46 chr3 95465978 95466345 -132058233 + THE1B LTR MaLR 1 364 0 297 280 0 0 chr3 95466521 95466596 -132057982 + CT-rich Low_complexity Low_complexity 2 76 0 613 321 32 43 chr3 95466672 95466949 -132057629 + L2 LINE L2 1716 1989 -1325 230 118 0 0 chr3 95467159 95467193 -132057385 - L1PA13 LINE L1 -92 6071 6038 * 483 226 8 16 chr3 95467181 95467305 -132057273 - L1M4 LINE L1 -1064 5082 4960 24 32 0 0 chr3 95467341 95467372 -132057206 + AT_rich Low_complexity Low_complexity 1 31 0 1023 283 55 65 chr3 95467542 95468481 -132056097 - L1M4c LINE L1 -4314 2249 1146 31 26 0 0 chr3 95468484 95468522 -132056056 + AT_rich Low_complexity Low_complexity 1 38 0 276 120 0 20 chr3 95469941 95469991 -132054587 + MADE1 DNA Mariner 1 49 -31 4520 152 66 5 chr3 95470058 95470896 -132053682 + L1MA6 LINE L1 5412 6300 0 985 240 34 5 chr3 95471061 95471265 -132053313 + MLT1A1 LTR MaLR 156 365 0 271 159 9 159 chr3 95471391 95471498 -132053080 - L2 LINE L2 -2 3311 3221 927 200 122 4 chr3 95471627 95471857 -132052721 + MLT1D LTR MaLR 249 505 0 182 371 0 0 chr3 95472210 95472272 -132052306 - L2 LINE L2 -2 3311 3250 597 313 45 32 chr3 95473495 95473741 -132050837 + MIR SINE MIR 11 259 -3 1844 181 19 60 chr3 95473743 95474163 -132050415 - MLT2D LTR ERVL -2 412 10 1481 237 42 6 chr3 95474169 95474506 -132050072 + MLT1A2 LTR MaLR 1 349 -25 536 283 103 13 chr3 95475653 95475939 -132048639 + L1ME LINE L1 5526 5737 -384 408 238 124 20 chr3 95476197 95476344 -132048234 + MIR SINE MIR 30 185 -77 198 326 11 45 chr3 95476717 95476806 -132047772 - L2 LINE L2 -1 3271 3186 396 327 56 0 chr3 95477234 95477396 -132047182 + MIR SINE MIR 81 251 -11 6357 58 5 5 chr3 95477490 95478299 -132046279 - L1PA6 LINE L1 0 6154 5346 630 148 36 71 chr3 95478401 95478597 -132045981 - Charlie5 DNA MER1_type -27 2585 2397 189 286 29 14 chr3 95478599 95478669 -132045909 + MIR SINE MIR 191 261 -1 3030 168 80 10 chr3 95479347 95479923 -132044655 + LTR26E LTR ERV1 7 622 0 570 274 19 94 chr3 95480284 95480496 -132044082 + MIR SINE MIR 12 207 -55 24 77 0 0 chr3 95480527 95480579 -132043999 + AT_rich Low_complexity Low_complexity 1 52 0 1732 201 0 3 chr3 95480611 95480925 -132043653 + MLT1A1 LTR MaLR 1 313 -52 1714 81 9 0 chr3 95480932 95481155 -132043423 - AluSc SINE Alu -14 295 71 1831 168 147 8 chr3 95481551 95481926 -132042652 - MSTA LTR MaLR -1 427 1 338 244 26 0 chr3 95481966 95482044 -132042534 + MLT1L LTR MaLR 315 394 -221 672 225 58 102 chr3 95482406 95482731 -132041847 - MER39 LTR ERV1 -140 567 257 303 28 0 0 chr3 95483106 95483142 -132041436 + (TG)n Simple_repeat Simple_repeat 1 36 0 393 278 28 0 chr3 95484776 95484884 -132039694 - MLT1I LTR MaLR -18 391 281 261 271 57 0 chr3 95485054 95485124 -132039454 - MLT1I LTR MaLR -238 171 98 2297 76 23 3 chr3 95485254 95485558 -132039020 + AluY SINE Alu 1 310 -1 299 300 11 11 chr3 95486152 95486242 -132038336 + L2 LINE L2 3174 3263 -9 240 314 34 54 chr3 95487074 95487278 -132037300 - L2 LINE L2 0 3313 3114 1250 282 65 34 chr3 95487379 95487768 -132036810 - MLT1L LTR MaLR -59 556 144 828 235 20 5 chr3 95487768 95487972 -132036606 - MER3 DNA MER1_type -2 207 1 1250 282 65 34 chr3 95487972 95488117 -132036461 - MLT1L LTR MaLR -471 144 5 232 318 45 19 chr3 95488206 95488360 -132036218 - L2 LINE L2 -870 2444 2287 307 268 18 18 chr3 95489267 95489379 -132035199 + (TA)n Simple_repeat Simple_repeat 2 113 0 235 304 22 22 chr3 95489380 95489472 -132035106 + L2 LINE L2 3147 3238 -75 2482 124 18 43 chr3 95489784 95490227 -132034351 - MSTB1 LTR MaLR 0 432 1 2467 82 0 0 chr3 95490296 95490600 -132033978 - AluSc SINE Alu -4 305 2 2835 19 0 0 chr3 95490638 95490955 -132033623 - AluYb8 SINE Alu -1 317 1 869 10 29 0 chr3 95491287 95491389 -132033189 + L1PA5 LINE L1 6039 6143 -11 28 0 0 0 chr3 95491389 95491417 -132033161 + AT_rich Low_complexity Low_complexity 1 28 0 246 32 0 0 chr3 95493359 95493390 -132031188 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 31 26 0 0 chr3 95695035 95695073 -131829505 + AT_rich Low_complexity Low_complexity 1 38 0 760 343 84 18 chr3 95696438 95696820 -131827758 + L3 LINE CR1 330 736 -841 14826 44 17 1 chr3 95696836 95699344 -131825234 + L1PA6 LINE L1 3562 6110 -44 12647 191 13 12 chr3 95699446 95703079 -131821499 + HERVE LTR ERV1 525 4218 -3595 * 14249 206 2 6 chr3 95703077 95705711 -131818867 + HERVE LTR ERV1 4787 7410 -403 332 82 0 0 chr3 95705832 95705881 -131818697 + (TA)n Simple_repeat Simple_repeat 2 50 0 1691 138 115 37 chr3 95706031 95706379 -131818199 - THE1C LTR MaLR 0 375 1 346 319 140 25 chr3 95706589 95706868 -131817710 + MLT1H LTR MaLR 43 353 -196 4689 194 29 0 chr3 95707244 95708118 -131816460 + MST-int LTR MaLR 16 914 -737 865 144 107 74 chr3 95708120 95708335 -131816243 + MSTA LTR MaLR 203 424 -4 6123 154 43 16 chr3 95708728 95709924 -131814654 - Tigger3b DNA MER2_type -3 1228 1 1210 231 95 15 chr3 95710001 95710339 -131814239 + MLT1A1 LTR MaLR 1 365 0 203 208 19 0 chr3 95710513 95710566 -131814012 + (TA)n Simple_repeat Simple_repeat 2 55 0 214 274 255 10 chr3 95711148 95711250 -131813328 + MIR SINE MIR 28 154 -108 1079 224 93 96 chr3 95712010 95712319 -131812259 + MLT1A1 LTR MaLR 27 396 0 1769 199 99 12 chr3 95713914 95714346 -131810232 + L1MC1 LINE L1 5812 6281 -52 2646 137 53 21 chr3 95714639 95715171 -131809407 - L1MA4 LINE L1 -10 6290 5742 281 336 21 43 chr3 95715179 95715319 -131809259 + L2 LINE L2 3163 3299 -14 2197 95 3 3 chr3 95715370 95715653 -131808925 + AluSp SINE Alu 1 283 -30 285 89 0 0 chr3 95715653 95715698 -131808880 + (TC)n Simple_repeat Simple_repeat 2 46 0 1648 201 90 108 chr3 95716135 95716892 -131807686 - LTR1B LTR ERV1 -81 745 3 21 36 0 0 chr3 95717432 95717460 -131807118 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr3 95718137 95718175 -131806403 + AT_rich Low_complexity Low_complexity 1 38 0 309 314 136 23 chr3 95718220 95718484 -131806094 - L1ME4a LINE L1 -107 6014 5721 231 218 0 0 chr3 95718672 95718727 -131805851 + (TG)n Simple_repeat Simple_repeat 2 56 0 258 266 25 13 chr3 95719094 95719173 -131805405 - LTR67 LTR ERVL 0 557 478 1957 121 9 29 chr3 95720990 95721305 -131803273 + AluSx SINE Alu 1 309 -3 1150 273 79 4 chr3 95721656 95722139 -131802439 + Charlie1b DNA MER1_type 4 522 -1 186 133 0 0 chr3 95723641 95723671 -131800907 + (TATG)n Simple_repeat Simple_repeat 3 32 0 2162 147 34 6 chr3 95724878 95725232 -131799346 + THE1B LTR MaLR 1 364 0 10792 115 17 1 chr3 95725239 95726781 -131797797 + THE1B-int LTR MaLR 14 1580 0 2006 163 31 14 chr3 95726783 95727139 -131797439 + THE1B LTR MaLR 3 364 0 180 349 111 63 chr3 95728615 95728804 -131795774 - L2 LINE L2 0 3272 3075 503 282 17 44 chr3 95729476 95729657 -131794921 - MER5B DNA MER1_type -2 176 1 234 286 0 0 chr3 95729690 95729746 -131794832 + MIR SINE MIR 17 72 -190 205 322 217 18 chr3 95730001 95730333 -131794245 - L2 LINE L2 -1156 2158 1761 187 340 62 21 chr3 95730643 95730740 -131793838 + L2 LINE L2 3208 3308 -5 25 0 0 0 chr3 95731178 95731203 -131793375 + AT_rich Low_complexity Low_complexity 1 25 0 2053 126 3 0 chr3 95731203 95731489 -131793089 - AluSq SINE Alu -26 287 1 2166 105 3 7 chr3 95732579 95732883 -131791695 + AluSg SINE Alu 1 303 -7 1297 165 55 7 chr3 95732954 95733226 -131791352 - L1MB4 LINE L1 0 6180 5896 207 211 0 19 chr3 95733448 95733500 -131791078 + GA-rich Low_complexity Low_complexity 2 52 0 457 337 49 12 chr3 95734649 95734892 -131789686 + MLT1I LTR MaLR 158 409 0 2189 176 26 58 chr3 95734918 95735451 -131789127 - L1MA10 LINE L1 -2 6332 5817 336 247 71 0 chr3 95735451 95735536 -131789042 + 5S rRNA rRNA 1 91 -30 2219 72 3 66 chr3 95735552 95735884 -131788694 - AluY SINE Alu 0 311 1 2053 149 19 35 chr3 95737259 95737629 -131786949 - THE1B LTR MaLR 0 364 1 5421 100 4 0 chr3 95737637 95738365 -131786213 - THE1B-int LTR MaLR -78 1502 772 4626 108 8 1 chr3 95738361 95739025 -131785553 - THE1B-int LTR MaLR -912 668 1 * 2027 148 22 22 chr3 95739025 95739389 -131785189 - THE1B LTR MaLR 0 364 1 191 351 61 26 chr3 95740449 95740563 -131784015 + L3b LINE CR1 1124 1241 -342 267 301 118 11 chr3 95741702 95741795 -131782783 - MIR3 SINE MIR -46 162 60 250 303 134 8 chr3 95741936 95742055 -131782523 + MIR3 SINE MIR 4 137 -71 23 78 0 0 chr3 95742371 95742422 -131782156 + AT_rich Low_complexity Low_complexity 1 51 0 350 317 102 32 chr3 95743216 95743462 -131781116 - L2 LINE L2 -31 3282 3020 1096 257 30 79 chr3 95743962 95744467 -131780111 + MLT2B1 LTR ERVL 1 480 -40 236 162 0 0 chr3 95744575 95744612 -131779966 + MLT2C2 LTR ERVL 428 464 0 41 58 0 0 chr3 95744688 95744757 -131779821 + AT_rich Low_complexity Low_complexity 1 69 0 378 264 128 24 chr3 95744797 95744922 -131779656 - L2 LINE L2 0 3313 3176 521 335 31 42 chr3 95744960 95745220 -131779358 + LTR33A LTR ERVL 6 262 -261 712 287 73 36 chr3 95745235 95745684 -131778894 + L1ME3 LINE L1 5417 5882 -280 307 277 5 33 chr3 95745700 95745884 -131778694 + (TA)n Simple_repeat Simple_repeat 2 180 0 1999 115 0 0 chr3 95746146 95746416 -131778162 + AluSq SINE Alu 33 302 -11 446 109 0 0 chr3 95746580 95746644 -131777934 - MADE1 DNA Mariner 0 80 17 499 306 72 18 chr3 95747335 95747557 -131777021 - MIR SINE MIR -27 235 2 612 233 6 6 chr3 95748009 95748172 -131776406 - L1MC4a LINE L1 -465 7343 7181 454 267 33 0 chr3 95748201 95748321 -131776257 - L1MC4 LINE L1 -1109 6933 6810 33 0 0 0 chr3 95751114 95751147 -131773431 + AT_rich Low_complexity Low_complexity 1 33 0 29 0 0 0 chr3 95752748 95752777 -131771801 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 95753591 95753614 -131770964 + AT_rich Low_complexity Low_complexity 1 23 0 193 349 45 0 chr3 95756072 95756138 -131768440 - L2 LINE L2 0 3272 3204 22 56 0 0 chr3 95756782 95756818 -131767760 + AT_rich Low_complexity Low_complexity 1 36 0 399 353 34 29 chr3 95757288 95757526 -131767052 - MIR SINE MIR -3 259 21 202 308 179 26 chr3 95758146 95758302 -131766276 + MIR SINE MIR 58 237 -25 485 273 97 34 chr3 95760528 95760795 -131763783 + Charlie7 DNA MER1_type 254 537 -2075 465 249 42 11 chr3 95760962 95761151 -131763427 + Charlie7 DNA MER1_type 2416 2610 -2 205 191 24 0 chr3 95761541 95761583 -131762995 + CT-rich Low_complexity Low_complexity 2 44 0 1928 271 31 7 chr3 95762024 95762641 -131761937 - L1 LINE L1 -3002 3144 2513 2480 27 17 0 chr3 95762642 95762943 -131761635 - AluYb8 SINE Alu -12 306 1 1295 197 46 23 chr3 95763087 95763438 -131761140 - L1MB4 LINE L1 -306 5874 5516 288 77 0 0 chr3 95763614 95763653 -131760925 + (TC)n Simple_repeat Simple_repeat 1 39 0 827 193 13 13 chr3 95763676 95763826 -131760752 + FRAM SINE Alu 1 150 -26 578 206 31 99 chr3 95764328 95764551 -131760027 + MER3 DNA MER1_type 1 208 -1 21 0 0 0 chr3 95765380 95765401 -131759177 + AT_rich Low_complexity Low_complexity 1 21 0 2329 109 0 0 chr3 95766098 95766410 -131758168 + AluSx SINE Alu 1 312 0 326 241 65 29 chr3 95766661 95766831 -131757747 + L1M3 LINE L1 5259 5434 -737 378 134 47 52 chr3 95767162 95767334 -131757244 + (TA)n Simple_repeat Simple_repeat 1 171 0 185 250 50 80 chr3 95768030 95768130 -131756448 + MER5A DNA MER1_type 45 141 -48 1669 200 58 3 chr3 95768210 95768555 -131756023 - MLT1A1 LTR MaLR 0 365 2 210 37 0 0 chr3 95768749 95768776 -131755802 + (CA)n Simple_repeat Simple_repeat 2 28 0 266 333 16 23 chr3 95769214 95769343 -131755235 - L2 LINE L2 -962 2352 2225 486 274 54 32 chr3 95770109 95770295 -131754283 + MIR SINE MIR 2 191 -71 196 302 81 23 chr3 95770343 95770429 -131754149 + MIR3 SINE MIR 82 172 -36 303 225 172 89 chr3 95772699 95772868 -131751710 + L1M2 LINE L1 541 723 -6126 203 231 0 0 chr3 95773098 95773137 -131751441 + CT-rich Low_complexity Low_complexity 3 41 0 377 54 18 0 chr3 95776511 95776567 -131748011 + (TA)n Simple_repeat Simple_repeat 2 58 0 573 217 0 0 chr3 95777218 95777347 -131747231 + (CATATA)n Simple_repeat Simple_repeat 4 132 0 229 217 0 17 chr3 95777349 95777409 -131747169 - L1MCa LINE L1 -4362 2064 2006 620 240 0 11 chr3 95777424 95777599 -131746979 + (CATATA)n Simple_repeat Simple_repeat 2 174 0 204 267 0 0 chr3 95777588 95777648 -131746930 + (CATA)n Simple_repeat Simple_repeat 2 61 0 * 587 201 22 22 chr3 95777652 95777831 -131746747 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 226 261 45 23 chr3 95777863 95777951 -131746627 - L1MC4 LINE L1 -1339 6703 6614 233 275 0 0 chr3 95777957 95778026 -131746552 - L1MC4 LINE L1 -1338 6704 6636 4344 230 49 28 chr3 95778999 95779157 -131745421 - L1PBb LINE L1 -3763 3085 2932 207 69 0 0 chr3 95779157 95779186 -131745392 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 4344 230 49 28 chr3 95779186 95780623 -131743955 - L1PBb LINE L1 -3916 2932 1347 388 387 63 36 chr3 95780975 95781481 -131743097 - L1PBb LINE L1 -6320 529 10 313 316 51 38 chr3 95782216 95782374 -131742204 - L1MC5 LINE L1 -1191 6770 6611 198 0 0 0 chr3 95782750 95782772 -131741806 + (TC)n Simple_repeat Simple_repeat 2 23 0 281 327 71 47 chr3 95783223 95783434 -131741144 + L2 LINE L2 2719 2934 -380 658 249 33 0 chr3 95783626 95783807 -131740771 - L1MA8 LINE L1 -4 6287 6101 427 223 45 0 chr3 95783808 95783920 -131740658 + L1MA8 LINE L1 6000 6116 -175 1271 199 14 5 chr3 95784686 95784907 -131739671 - L1P2 LINE L1 -678 5476 5254 666 13 0 0 chr3 95784915 95784991 -131739587 + L1PA5 LINE L1 6068 6143 -11 240 35 0 0 chr3 95784992 95785021 -131739557 + (TA)n Simple_repeat Simple_repeat 2 30 0 229 319 76 14 chr3 95785433 95785577 -131739001 - L1ME LINE L1 -207 5914 5762 255 270 0 14 chr3 95785864 95785938 -131738640 - MLT1G1 LTR MaLR -16 579 507 45 75 0 0 chr3 95786523 95786617 -131737961 + AT_rich Low_complexity Low_complexity 1 94 0 22 70 0 0 chr3 95786919 95786962 -131737616 + AT_rich Low_complexity Low_complexity 1 43 0 34 24 0 0 chr3 95787091 95787132 -131737446 + AT_rich Low_complexity Low_complexity 1 41 0 1679 244 68 76 chr3 95787529 95788672 -131735906 - L1M3c LINE L1 -4820 2217 7 638 284 63 47 chr3 95788705 95789004 -131735574 + MLT1I LTR MaLR 80 383 -26 366 23 0 0 chr3 95789504 95789547 -131735031 + (TG)n Simple_repeat Simple_repeat 1 43 0 306 315 79 24 chr3 95789660 95789787 -131734791 - MIR SINE MIR -92 170 37 263 200 107 13 chr3 95791164 95791239 -131733339 + MER103 DNA DNA 17 98 -68 23 0 0 0 chr3 95791758 95791781 -131732797 + AT_rich Low_complexity Low_complexity 1 23 0 2436 285 84 32 chr3 95792392 95793446 -131731132 + L1M3d LINE L1 2 1110 -4781 1900 188 38 2 chr3 95793449 95793848 -131730730 + L1MB1 LINE L1 4679 5091 -1055 361 253 180 57 chr3 95793856 95794101 -131730477 - LTR28 LTR ERV1 0 1020 746 1021 57 0 0 chr3 95794102 95794225 -131730353 + AluY SINE Alu 182 304 -7 1435 198 95 88 chr3 95794239 95794764 -131729814 - LTR1B LTR ERV1 -297 529 1 3653 195 16 60 chr3 95794764 95795459 -131729119 + L1MB1 LINE L1 5096 5730 -438 267 79 0 0 chr3 95795459 95795497 -131729081 + (TG)n Simple_repeat Simple_repeat 1 38 0 3653 195 16 60 chr3 95795497 95795917 -131728661 + L1MB1 LINE L1 5730 6167 -1 9363 82 27 1 chr3 95796444 95798491 -131726087 + L1PA7 LINE L1 4092 6154 0 752 245 25 0 chr3 95798646 95798805 -131725773 - FRAM SINE Alu -13 163 1 2059 135 0 0 chr3 95799946 95800235 -131724343 + AluSx SINE Alu 1 289 -23 329 288 114 39 chr3 95800265 95800613 -131723965 + L1ME4a LINE L1 4781 5190 -956 264 77 0 0 chr3 95800613 95800652 -131723926 + (TAA)n Simple_repeat Simple_repeat 1 39 0 329 288 114 39 chr3 95800652 95800872 -131723706 + L1ME4a LINE L1 5190 5392 -754 312 241 69 26 chr3 95800893 95801009 -131723569 + L1MC4a LINE L1 6059 6179 -1629 858 256 171 49 chr3 95801289 95801388 -131723190 + L1MC4 LINE L1 6415 6501 -1541 3618 21 28 0 chr3 95801388 95801820 -131722758 + L1PA3 LINE L1 5712 6155 0 858 256 171 49 chr3 95801820 95801970 -131722608 + L1MC4 LINE L1 6501 6631 -1411 189 0 0 0 chr3 95801970 95801991 -131722587 + (TG)n Simple_repeat Simple_repeat 2 22 0 858 256 171 49 chr3 95801991 95802232 -131722346 + L1MC4 LINE L1 6631 6966 -1076 1868 192 54 17 chr3 95802232 95802639 -131721939 + MSTC LTR MaLR 1 422 -6 2621 258 48 28 chr3 95802716 95803633 -131720945 + L1MC4 LINE L1 6964 7861 -181 2119 141 44 8 chr3 95803633 95803995 -131720583 - THE1C LTR MaLR 0 375 1 2621 258 48 28 chr3 95803995 95804012 -131720566 + L1MC4 LINE L1 7861 7876 -166 237 33 0 0 chr3 95804012 95804042 -131720536 + (GA)n Simple_repeat Simple_repeat 1 30 0 2621 258 48 28 chr3 95804042 95804163 -131720415 + L1MC4 LINE L1 7876 8041 -1 277 258 86 25 chr3 95804734 95804897 -131719681 - L1MEd LINE L1 -5908 211 39 422 319 88 37 chr3 95805547 95805635 -131718943 + L1ME4a LINE L1 5466 5548 -573 1170 106 141 213 chr3 95805635 95806096 -131718482 + MSTA LTR MaLR 1 428 0 422 319 88 37 chr3 95806096 95806440 -131718138 + L1ME4a LINE L1 5548 5919 -202 472 94 12 12 chr3 95808113 95808198 -131716380 + (TCTA)n Simple_repeat Simple_repeat 4 88 0 3384 133 23 57 chr3 95809635 95810283 -131714295 + L1PB4 LINE L1 5308 5933 -223 203 138 0 0 chr3 95811079 95811108 -131713470 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 684 83 0 0 chr3 95812702 95812798 -131711780 + (TCTCC)n Simple_repeat Simple_repeat 1 96 0 639 80 0 80 chr3 95812803 95812903 -131711675 - MER4B LTR ERV1 -1 609 518 2249 111 0 0 chr3 95813093 95813391 -131711187 - AluSq SINE Alu -13 300 3 276 191 19 9 chr3 95813769 95813874 -131710704 + (TA)n Simple_repeat Simple_repeat 2 107 0 361 377 80 59 chr3 95814516 95814940 -131709638 - L2 LINE L2 -1 3271 2839 1765 142 0 11 chr3 95815041 95815315 -131709263 - AluSx SINE Alu -12 300 30 888 372 52 36 chr3 95815444 95815960 -131708618 - L2 LINE L2 -672 2642 2104 2020 149 0 0 chr3 95815960 95816261 -131708317 + AluSx SINE Alu 1 301 -11 888 372 52 36 chr3 95816261 95816652 -131707926 - L2 LINE L2 -1210 2104 1721 21 36 0 0 chr3 95819126 95819154 -131705424 + AT_rich Low_complexity Low_complexity 1 28 0 1371 286 87 52 chr3 95819488 95820239 -131704339 + HERV16 LTR ERVL 551 1327 -3669 2281 331 66 45 chr3 95820362 95823986 -131700592 + HERV16 LTR ERVL 1560 5356 -408 260 305 95 0 chr3 95824132 95824237 -131700341 + LTR16A LTR ERVL 1 115 -335 2666 211 16 8 chr3 95824500 95825011 -131699567 + MLT2B3 LTR ERVL 1 515 -39 1381 200 82 25 chr3 95825073 95825428 -131699150 + THE1C LTR MaLR 1 375 0 9270 144 19 35 chr3 95825430 95827034 -131697544 + THE1C-int LTR MaLR 3 1579 -1 1696 180 73 17 chr3 95827034 95827389 -131697189 + THE1C LTR MaLR 1 375 0 228 290 14 0 chr3 95827557 95827626 -131696952 + L2 LINE L2 3244 3313 0 2151 183 25 38 chr3 95828053 95828502 -131696076 - MLT2C2 LTR ERVL -2 462 20 2314 97 0 22 chr3 95828869 95829189 -131695389 + AluSq SINE Alu 1 313 0 507 303 9 23 chr3 95830534 95830755 -131693823 + L1ME LINE L1 4807 5024 -1122 565 193 118 0 chr3 95831057 95831192 -131693386 + MIR SINE MIR 109 259 -3 344 319 80 82 chr3 95831419 95831880 -131692698 + L2 LINE L2 2220 2679 -635 22 0 0 0 chr3 95832286 95832308 -131692270 + AT_rich Low_complexity Low_complexity 1 22 0 225 262 33 0 chr3 95832499 95832560 -131692018 + MER5A DNA MER1_type 9 71 -118 722 146 7 42 chr3 95832784 95832928 -131691650 + FRAM SINE Alu 8 146 -30 210 143 0 0 chr3 95832932 95832967 -131691611 + (CAAAA)n Simple_repeat Simple_repeat 4 38 0 207 69 0 0 chr3 95833585 95833614 -131690964 + (A)n Simple_repeat Simple_repeat 1 29 0 24 32 0 0 chr3 95834353 95834384 -131690194 + AT_rich Low_complexity Low_complexity 1 31 0 875 296 48 38 chr3 95834618 95835010 -131689568 - MLT1I LTR MaLR -8 401 6 23 0 0 0 chr3 95835726 95835749 -131688829 + AT_rich Low_complexity Low_complexity 1 23 0 290 244 133 22 chr3 95839300 95839390 -131685188 - L2 LINE L2 -4 3268 3169 276 318 48 0 chr3 95840622 95840748 -131683830 + ERVL LTR ERVL 3909 4040 -1724 1173 256 39 11 chr3 95841015 95841379 -131683199 - L1ME3A LINE L1 -188 5982 5609 534 235 0 0 chr3 95841413 95841515 -131683063 + MER96 DNA MER1_type? 73 174 -1 746 279 33 60 chr3 95841565 95842046 -131682532 - L1ME3A LINE L1 -1101 5045 4578 1653 175 24 0 chr3 95842697 95842988 -131681590 - AluJb SINE Alu -14 298 1 278 267 7 48 chr3 95843164 95843310 -131681268 + T-rich Low_complexity Low_complexity 2 141 0 23 33 0 0 chr3 95844739 95844769 -131679809 + AT_rich Low_complexity Low_complexity 1 30 0 1137 280 60 8 chr3 95846783 95847280 -131677298 + L1ME LINE L1 5262 5784 -378 2892 165 4 4 chr3 95847281 95847766 -131676812 + MER66B LTR ERV1 2 486 0 22 56 0 0 chr3 95848323 95848359 -131676219 + AT_rich Low_complexity Low_complexity 1 36 0 28 48 0 0 chr3 95848945 95848987 -131675591 + AT_rich Low_complexity Low_complexity 1 42 0 246 329 83 92 chr3 95849181 95849616 -131674962 - L3 LINE CR1 -1 1576 1146 421 359 30 13 chr3 95849964 95850195 -131674383 - MIR SINE MIR -10 252 18 209 277 15 0 chr3 95850820 95850885 -131673693 + L2 LINE L2 2345 2410 -904 203 321 83 28 chr3 95851066 95851175 -131673403 - L2 LINE L2 -9 3304 3190 23 0 0 0 chr3 95851950 95851973 -131672605 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 95852011 95852033 -131672545 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 95852210 95852237 -131672341 + AT_rich Low_complexity Low_complexity 1 27 0 1871 173 88 26 chr3 95852402 95852859 -131671719 - MER31A LTR ERV1 0 485 1 462 322 78 25 chr3 95852941 95853186 -131671392 - L2 LINE L2 -18 3295 3038 22 70 0 0 chr3 95855051 95855094 -131669484 + AT_rich Low_complexity Low_complexity 1 43 0 26 0 0 0 chr3 95855382 95855408 -131669170 + AT_rich Low_complexity Low_complexity 1 26 0 206 167 71 0 chr3 95855831 95855873 -131668705 + L2 LINE L2 3226 3270 -2 21 36 0 0 chr3 95857351 95857379 -131667199 + AT_rich Low_complexity Low_complexity 1 28 0 930 73 0 0 chr3 95857393 95857516 -131667062 + L1PA6 LINE L1 5872 5994 -160 195 100 0 0 chr3 95860728 95860758 -131663820 + (TTCA)n Simple_repeat Simple_repeat 4 33 0 2069 158 11 11 chr3 95860855 95861216 -131663362 - THE1C LTR MaLR 0 375 15 244 275 132 54 chr3 95861486 95861653 -131662925 - LTR33 LTR ERVL -53 468 289 3107 128 27 31 chr3 95861771 95862327 -131662251 + MER41A LTR ERV1 1 554 0 21 57 0 0 chr3 95863873 95863908 -131660670 + AT_rich Low_complexity Low_complexity 1 35 0 182 383 128 14 chr3 95864146 95864287 -131660291 + L2 LINE L2 3116 3272 0 207 114 0 0 chr3 95864288 95864323 -131660255 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 773 148 0 21 chr3 95864364 95864506 -131660072 - L1PB3 LINE L1 0 6154 6016 184 299 82 31 chr3 95864689 95864786 -131659792 - MIR SINE MIR -62 146 45 182 367 147 23 chr3 95865282 95865541 -131659037 - L2 LINE L2 -18 3295 3005 1789 171 0 7 chr3 95865819 95866123 -131658455 - AluSx SINE Alu -10 302 1 753 60 26 0 chr3 95866299 95866415 -131658163 + (TCTA)n Simple_repeat Simple_repeat 4 122 0 538 220 20 13 chr3 95866570 95866720 -131657858 - AluSp/q SINE Alu -2 311 161 2318 80 23 0 chr3 95867060 95867362 -131657216 - AluSc SINE Alu 0 309 1 228 186 0 0 chr3 95867496 95867555 -131657023 + (CAT)n Simple_repeat Simple_repeat 2 60 0 368 284 39 65 chr3 95867555 95867710 -131656868 - MIR SINE MIR -8 254 104 26 0 0 0 chr3 95867832 95867858 -131656720 + AT_rich Low_complexity Low_complexity 1 26 0 2072 145 0 0 chr3 95868018 95868322 -131656256 + AluSx SINE Alu 3 306 -6 215 157 20 0 chr3 95868672 95868723 -131655855 + CT-rich Low_complexity Low_complexity 1 52 0 325 138 0 35 chr3 95868724 95868782 -131655796 + (TCCC)n Simple_repeat Simple_repeat 2 57 0 798 174 11 6 chr3 95868783 95868961 -131655617 + CT-rich Low_complexity Low_complexity 2 180 0 181 148 19 19 chr3 95869342 95869396 -131655182 + (TA)n Simple_repeat Simple_repeat 1 54 0 1930 140 0 14 chr3 95869396 95869718 -131654860 - AluSq SINE Alu 0 322 5 1666 158 25 4 chr3 95869846 95870125 -131654453 + AluSx SINE Alu 1 285 -27 531 69 0 0 chr3 95870125 95870197 -131654381 + (GA)n Simple_repeat Simple_repeat 1 72 0 607 240 7 0 chr3 95871601 95871751 -131652827 + L1MA10 LINE L1 6168 6318 -16 2070 126 13 3 chr3 95871777 95872087 -131652491 + AluSq SINE Alu 1 313 0 2785 158 85 2 chr3 95872197 95872704 -131651874 - ERVL LTR ERVL -756 5008 4460 * 5490 207 23 21 chr3 95872702 95873826 -131650752 - ERVL LTR ERVL -1161 4603 3478 476 296 93 0 chr3 95873992 95874154 -131650424 + MIR SINE MIR 69 245 -17 219 103 0 0 chr3 95875038 95875067 -131649511 + (TCCC)n Simple_repeat Simple_repeat 3 31 0 802 171 0 27 chr3 95875067 95875314 -131649264 + CT-rich Low_complexity Low_complexity 1 240 0 1926 123 70 22 chr3 95875619 95875977 -131648601 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr3 95876567 95876588 -131647990 + AT_rich Low_complexity Low_complexity 1 21 0 255 336 28 7 chr3 95877667 95877810 -131646768 - MLT1K LTR MaLR -2 586 441 535 321 55 21 chr3 95879422 95879659 -131644919 - MIR SINE MIR -13 249 5 292 160 49 7 chr3 95880748 95880892 -131643686 + (TA)n Simple_repeat Simple_repeat 1 150 0 1346 236 57 23 chr3 95881372 95881809 -131642769 - L1ME2 LINE L1 -1 6163 5712 1007 287 81 8 chr3 95881898 95881916 -131642662 - L1ME2 LINE L1 -1829 4317 4302 2840 10 0 0 chr3 95881916 95882223 -131642355 - AluY SINE Alu -4 307 1 1007 287 81 8 chr3 95882223 95882698 -131641880 - L1ME2 LINE L1 -1844 4302 3788 1043 231 0 29 chr3 95882991 95883272 -131641306 - L1PB2 LINE L1 -2059 4087 3815 * 5683 204 7 39 chr3 95883269 95885011 -131639567 + L1PB2 LINE L1 4060 5856 -295 309 109 0 0 chr3 95885011 95885057 -131639521 + (TA)n Simple_repeat Simple_repeat 2 47 0 5683 204 7 39 chr3 95885057 95885288 -131639290 + L1PB2 LINE L1 5856 5961 -190 2160 129 0 0 chr3 95885288 95885590 -131638988 + AluSg SINE Alu 1 302 -8 5683 204 7 39 chr3 95885590 95885774 -131638804 + L1PB2 LINE L1 5961 6149 -2 916 262 67 25 chr3 95885776 95886257 -131638321 - L1 LINE L1 -2760 3386 2886 433 300 119 23 chr3 95886798 95887058 -131637520 + L1M4 LINE L1 2739 3023 -3123 210 342 13 0 chr3 95887087 95887163 -131637415 - L2 LINE L2 -43 3229 3153 201 193 34 34 chr3 95887278 95887366 -131637212 + (ATATG)n Simple_repeat Simple_repeat 3 90 0 1109 241 78 71 chr3 95887755 95888065 -131636513 + LTR40b LTR ERVL 3 318 -144 196 0 118 0 chr3 95888065 95888099 -131636479 + A-rich Low_complexity Low_complexity 2 39 0 1109 241 78 71 chr3 95888099 95888223 -131636355 + LTR40b LTR ERVL 318 440 -22 5006 146 88 129 chr3 95890483 95892000 -131632578 - pTR5 LTR ERV1 -143 2295 73 517 333 52 44 chr3 95892000 95892457 -131632121 + MER20B DNA MER1_type 55 515 -268 24 67 0 0 chr3 95893093 95893138 -131631440 + AT_rich Low_complexity Low_complexity 1 45 0 186 43 0 0 chr3 95893390 95893413 -131631165 + (TC)n Simple_repeat Simple_repeat 2 24 0 498 290 50 45 chr3 95895378 95895599 -131628979 + MIR SINE MIR 28 249 -13 25 0 0 0 chr3 95895919 95895944 -131628634 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr3 95896005 95896037 -131628541 + AT_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr3 95897213 95897234 -131627344 + (T)n Simple_repeat Simple_repeat 1 21 0 227 211 0 14 chr3 95897640 95897711 -131626867 + CT-rich Low_complexity Low_complexity 2 71 0 22 56 0 0 chr3 95898929 95898965 -131625613 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr3 95899105 95899128 -131625450 + AT_rich Low_complexity Low_complexity 1 23 0 192 281 0 35 chr3 95899374 95899445 -131625133 - MIR SINE MIR -103 105 52 723 266 18 14 chr3 95900285 95900507 -131624071 + MER115 DNA AcHobo 461 683 -10 22 35 0 0 chr3 95900729 95900758 -131623820 + AT_rich Low_complexity Low_complexity 1 29 0 514 345 6 12 chr3 95900892 95901060 -131623518 + L2 LINE L2 2925 3091 -181 190 348 79 0 chr3 95901174 95901263 -131623315 - L2 LINE L2 -6 3266 3171 3971 202 46 47 chr3 95902076 95903990 -131620588 + L1MA9 LINE L1 4256 6189 -123 362 21 21 0 chr3 95903990 95904037 -131620541 + (CA)n Simple_repeat Simple_repeat 1 48 0 3971 202 46 47 chr3 95904037 95904161 -131620417 + L1MA9 LINE L1 6189 6312 0 1479 208 45 12 chr3 95904219 95904551 -131620027 + MER2 DNA MER2_type 2 344 0 517 236 129 21 chr3 95904551 95904600 -131619978 + L1MC5 LINE L1 7604 7646 -315 5663 33 1 0 chr3 95904600 95905269 -131619309 + L1PA4 LINE L1 5481 6150 -5 517 236 129 21 chr3 95905269 95905499 -131619079 + L1MC5 LINE L1 7646 7913 -48 336 295 85 16 chr3 95905754 95905883 -131618695 - MIR SINE MIR -66 196 59 1469 233 107 28 chr3 95906181 95906584 -131617994 + MLT1D LTR MaLR 1 447 -58 2022 118 36 0 chr3 95906584 95906864 -131617714 - AluSg SINE Alu -20 290 1 1469 233 107 28 chr3 95906864 95906928 -131617650 + MLT1D LTR MaLR 447 505 0 6096 167 28 51 chr3 95907196 95908441 -131616137 + L1MA3 LINE L1 3823 5095 -1210 1615 192 3 10 chr3 95908441 95908743 -131615835 + AluJb SINE Alu 1 300 -12 6096 167 28 51 chr3 95908743 95909545 -131615033 + L1MA3 LINE L1 5095 5796 -509 318 26 0 0 chr3 95909545 95909584 -131614994 + (CA)n Simple_repeat Simple_repeat 2 40 0 6096 167 28 51 chr3 95909584 95910063 -131614515 + L1MA3 LINE L1 5796 6285 -20 1808 231 36 2 chr3 95910120 95910597 -131613981 + L1MA5 LINE L1 4909 5401 -745 2566 140 32 34 chr3 95910597 95911103 -131613475 + L1MA5 LINE L1 5790 6294 -6 27 29 0 0 chr3 95911464 95911498 -131613080 + AT_rich Low_complexity Low_complexity 1 34 0 27 49 0 0 chr3 95912845 95912886 -131611692 + AT_rich Low_complexity Low_complexity 1 41 0 28 29 0 0 chr3 95912930 95912965 -131611613 + AT_rich Low_complexity Low_complexity 1 35 0 181 349 61 38 chr3 95913331 95913463 -131611115 + L2 LINE L2 2950 3084 -188 21 36 0 0 chr3 95913798 95913826 -131610752 + AT_rich Low_complexity Low_complexity 1 28 0 2651 36 0 0 chr3 95914234 95914540 -131610038 + AluY SINE Alu 1 306 -5 5009 255 96 34 chr3 95914544 95916696 -131607882 - L1M4c LINE L1 -4652 2307 29 472 116 0 0 chr3 95917059 95917128 -131607450 + AluSc SINE Alu 227 295 -14 1418 255 33 48 chr3 95917128 95917548 -131607030 - MLT2B1 LTR ERVL -79 441 28 3721 179 34 1 chr3 95917563 95918272 -131606306 - ERVL-B1 LTR ERVL -13 5751 5020 1538 220 10 0 chr3 95918518 95918827 -131605751 - AluSx SINE Alu 0 312 1 1662 137 32 54 chr3 95918845 95918965 -131605613 - Tigger3(Golem) DNA MER2_type 0 3028 2907 1598 137 60 81 chr3 95918965 95919346 -131605232 - THE1C LTR MaLR 0 375 3 1662 137 32 54 chr3 95919346 95919540 -131605038 - Tigger3(Golem) DNA MER2_type -121 2907 2721 235 357 32 0 chr3 95919857 95919983 -131604595 + L1ME LINE L1 5507 5636 -485 273 57 0 0 chr3 95920425 95920460 -131604118 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1857 92 4 0 chr3 95920471 95920711 -131603867 - AluSc SINE Alu -68 241 1 322 256 37 24 chr3 95920711 95920793 -131603785 - MLT1J1 LTR MaLR -120 326 244 272 128 51 0 chr3 95921814 95921892 -131602686 + (TA)n Simple_repeat Simple_repeat 1 82 0 6228 203 54 53 chr3 95923022 95924775 -131599803 - MER52A LTR ERV1 0 1755 1 851 201 0 0 chr3 95925333 95925495 -131599083 - AluJb SINE Alu 0 312 154 2779 90 19 10 chr3 95925496 95925908 -131598670 + L1PA10 LINE L1 5752 6167 -1 313 359 94 9 chr3 95927205 95927428 -131597150 - MIR SINE MIR -13 249 8 36 87 0 0 chr3 95928236 95928328 -131596250 + AT_rich Low_complexity Low_complexity 1 92 0 252 86 0 0 chr3 95928802 95928837 -131595741 + (TC)n Simple_repeat Simple_repeat 2 36 0 1665 117 35 0 chr3 95928856 95929087 -131595491 - AluSp SINE Alu -74 239 1 22 0 0 0 chr3 95929727 95929749 -131594829 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 95930583 95930604 -131593974 + AT_rich Low_complexity Low_complexity 1 21 0 2143 123 3 0 chr3 95932634 95932934 -131591644 + AluSq SINE Alu 1 301 -12 362 278 70 39 chr3 95934310 95934603 -131589975 - AluSc SINE Alu 0 333 33 202 132 44 33 chr3 95935100 95935191 -131589387 + (TGGG)n Simple_repeat Simple_repeat 1 92 0 211 184 41 0 chr3 95935347 95935396 -131589182 + CT-rich Low_complexity Low_complexity 3 53 0 1443 218 19 16 chr3 95935396 95935704 -131588874 - AluJo SINE Alu 0 312 4 22 0 0 0 chr3 95935791 95935813 -131588765 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr3 95935902 95935932 -131588646 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr3 95936481 95936512 -131588066 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr3 95937318 95937352 -131587226 + AT_rich Low_complexity Low_complexity 1 34 0 300 221 53 8 chr3 95938204 95938335 -131586243 + (TA)n Simple_repeat Simple_repeat 1 137 0 204 189 68 0 chr3 95938358 95938432 -131586146 + (TA)n Simple_repeat Simple_repeat 1 79 0 727 295 54 86 chr3 95939271 95939807 -131584771 - LTR67 LTR ERVL -32 525 7 333 0 0 0 chr3 95939978 95940015 -131584563 + (TTA)n Simple_repeat Simple_repeat 3 39 0 1361 44 0 38 chr3 95940015 95940198 -131584380 - L1PA5 LINE L1 -18 6136 5961 3539 26 2 0 chr3 95940198 95940613 -131583965 + L1PA5 LINE L1 5548 5963 -191 1815 152 22 0 chr3 95940895 95941206 -131583372 - AluSx SINE Alu 0 317 1 239 324 158 49 chr3 95941340 95941834 -131582744 + L2 LINE L2 1851 2398 -916 1683 172 31 3 chr3 95942419 95942709 -131581869 - AluJo SINE Alu -14 298 1 28 61 0 0 chr3 95943602 95943651 -131580927 + AT_rich Low_complexity Low_complexity 1 49 0 239 154 0 46 chr3 95943946 95943954 -131580624 + (TA)n Simple_repeat Simple_repeat 1 8 -54 3646 123 67 3 chr3 95943954 95944550 -131580028 - MER51A LTR ERV1 0 634 1 239 154 0 46 chr3 95944550 95944606 -131579972 + (TA)n Simple_repeat Simple_repeat 8 62 0 534 249 215 63 chr3 95944606 95944955 -131579623 + MLT1D LTR MaLR 68 469 -36 225 400 12 0 chr3 95945447 95945532 -131579046 - HAL1 LINE L1 -596 1911 1826 21 57 0 0 chr3 95945634 95945669 -131578909 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr3 95946551 95946581 -131577997 + AT_rich Low_complexity Low_complexity 1 30 0 326 337 37 21 chr3 95946660 95946847 -131577731 - HERV16 LTR ERVL -1108 4546 4357 296 318 186 0 chr3 95946895 95947024 -131577554 - HERV16 LTR ERVL -3020 1976 1824 2648 319 91 42 chr3 95947157 95948672 -131575906 - HERV16 LTR ERVL -3405 1591 2 695 333 82 24 chr3 95948676 95949006 -131575572 - LTR16A LTR ERVL -5 445 97 27 29 0 0 chr3 95950994 95951028 -131573550 + AT_rich Low_complexity Low_complexity 1 34 0 1747 194 78 61 chr3 95952624 95953083 -131571495 - MLT1C LTR MaLR 0 467 1 1458 126 0 0 chr3 95953948 95954163 -131570415 - AluSg/x SINE Alu -4 308 94 22 0 0 0 chr3 95954690 95954712 -131569866 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 95955026 95955047 -131569531 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr3 95955129 95955163 -131569415 + AT_rich Low_complexity Low_complexity 1 34 0 456 253 0 0 chr3 95955664 95955759 -131568819 + MSTD LTR MaLR 3 97 -331 1368 158 33 12 chr3 95955764 95956005 -131568573 + AluSq SINE Alu 1 246 -67 1221 100 0 0 chr3 95956006 95956166 -131568412 + AluSq SINE Alu 5 164 -149 441 146 0 34 chr3 95956166 95956255 -131568323 + AluYb8 SINE Alu 228 313 -5 761 221 136 36 chr3 95956255 95956500 -131568078 + MSTD LTR MaLR 93 394 -2 220 343 82 55 chr3 95956598 95956744 -131567834 - MER5A DNA MER1_type -3 186 37 545 325 89 53 chr3 95959145 95959613 -131564965 + L2 LINE L2 2672 3170 -143 428 271 171 0 chr3 95960046 95960175 -131564403 - L2 LINE L2 -5 3308 3158 211 244 13 13 chr3 95960186 95960264 -131564314 + (TA)n Simple_repeat Simple_repeat 1 78 0 365 215 11 21 chr3 95960436 95960529 -131564049 - Charlie1a DNA MER1_type -4 1451 1360 2389 204 95 20 chr3 95960594 95961339 -131563239 - Charlie1a DNA MER1_type -99 1356 556 270 73 0 0 chr3 95961356 95961397 -131563181 + (TG)n Simple_repeat Simple_repeat 1 41 0 515 249 47 47 chr3 95961397 95961590 -131562988 - Charlie1a DNA MER1_type -1230 225 33 369 235 106 65 chr3 95962707 95962791 -131561787 + MIR SINE MIR 86 165 -97 2041 107 7 39 chr3 95962791 95963099 -131561479 + AluSp SINE Alu 1 298 -15 369 235 106 65 chr3 95963099 95963184 -131561394 + MIR SINE MIR 165 262 0 270 0 0 0 chr3 95963386 95963416 -131561162 + (A)n Simple_repeat Simple_repeat 1 30 0 301 257 14 0 chr3 95964917 95964991 -131559587 + (CATATA)n Simple_repeat Simple_repeat 3 77 0 315 0 0 0 chr3 95965341 95965376 -131559202 + (CA)n Simple_repeat Simple_repeat 1 35 0 2264 112 0 0 chr3 95965605 95965917 -131558661 + AluSx SINE Alu 1 312 0 421 78 101 4 chr3 95966715 95966978 -131557600 + (TA)n Simple_repeat Simple_repeat 1 288 0 246 156 16 31 chr3 95966988 95967052 -131557526 + (TTATA)n Simple_repeat Simple_repeat 4 66 0 300 130 34 34 chr3 95967053 95967230 -131557348 + (TAA)n Simple_repeat Simple_repeat 3 179 0 * 713 84 68 18 chr3 95967200 95967722 -131556856 + (TA)n Simple_repeat Simple_repeat 1 547 0 22 35 0 0 chr3 95967948 95967977 -131556601 + AT_rich Low_complexity Low_complexity 1 29 0 540 136 0 0 chr3 95969102 95969183 -131555395 - AluSg/x SINE Alu -18 291 211 480 89 0 0 chr3 95969542 95969621 -131554957 + (TA)n Simple_repeat Simple_repeat 2 80 0 22 70 0 0 chr3 95969882 95969925 -131554653 + AT_rich Low_complexity Low_complexity 1 43 0 377 284 256 33 chr3 95970008 95970219 -131554359 + MIR SINE MIR 5 262 0 27 0 0 0 chr3 95970986 95971013 -131553565 + AT_rich Low_complexity Low_complexity 1 27 0 23 54 0 0 chr3 95972197 95972234 -131552344 + AT_rich Low_complexity Low_complexity 1 37 0 483 307 145 14 chr3 95973173 95973456 -131551122 + LTR67 LTR ERVL 210 529 -28 21 0 0 0 chr3 95973908 95973929 -131550649 + AT_rich Low_complexity Low_complexity 1 21 0 621 192 53 159 chr3 95974108 95974236 -131550342 - MLT1A2 LTR MaLR -104 270 191 1973 142 0 3 chr3 95974236 95974532 -131550046 - AluSc SINE Alu -14 295 1 621 192 53 159 chr3 95974532 95974705 -131549873 - MLT1A2 LTR MaLR -183 191 1 2465 252 151 44 chr3 95974706 95975957 -131548621 - MLT1A2-int LTR MaLR -1 1370 5 1434 262 8 73 chr3 95975987 95976483 -131548095 - MLT2B1 LTR ERVL -56 464 1 332 240 48 96 chr3 95977579 95977725 -131546853 + LTR16C LTR ERVL 1 139 -352 352 203 149 0 chr3 95977966 95978084 -131546494 + MLT1C LTR MaLR 1 133 -257 709 286 85 27 chr3 95978140 95978469 -131546109 + MLT1C LTR MaLR 97 444 -23 2052 107 0 54 chr3 95979086 95979403 -131545175 - AluSg SINE Alu -10 300 1 194 105 26 0 chr3 95979924 95979962 -131544616 + (TCTA)n Simple_repeat Simple_repeat 3 41 0 2119 106 0 7 chr3 95980644 95980962 -131543616 - AluSg SINE Alu 0 316 1 613 280 126 25 chr3 95981285 95981603 -131542975 - L1M4 LINE L1 -399 5785 5436 375 360 92 23 chr3 95982109 95982498 -131542080 - L1M4 LINE L1 -2042 4104 3689 6755 66 7 3 chr3 95982499 95983546 -131541032 - L1PA7 LINE L1 -8 6146 5097 2445 103 0 0 chr3 95983548 95983897 -131540681 + L1PA7 LINE L1 4746 5094 -1052 324 247 147 67 chr3 95984228 95984378 -131540200 - MIR SINE MIR -59 203 42 23 54 0 0 chr3 95984919 95984956 -131539622 + AT_rich Low_complexity Low_complexity 1 37 0 31 88 0 0 chr3 95985702 95985782 -131538796 + AT_rich Low_complexity Low_complexity 1 80 0 908 177 39 6 chr3 95985821 95986002 -131538576 + MLT1D LTR MaLR 5 191 -314 21 0 0 0 chr3 95986160 95986181 -131538397 + AT_rich Low_complexity Low_complexity 1 21 0 436 155 10 19 chr3 95986605 95986708 -131537870 - L1MA4 LINE L1 -2 6298 6197 1069 220 23 81 chr3 95986932 95987277 -131537301 + MLT1D LTR MaLR 181 505 0 1346 167 73 17 chr3 95987587 95987887 -131536691 + MER33 DNA MER1_type 8 324 0 873 153 57 6 chr3 95987920 95988096 -131536482 + MLT1C LTR MaLR 1 185 -282 1101 241 28 24 chr3 95988096 95988345 -131536233 + AluJo SINE Alu 1 250 -62 22 35 0 0 chr3 95988354 95988383 -131536195 + AT_rich Low_complexity Low_complexity 1 29 0 924 228 34 55 chr3 95988384 95988693 -131535885 + MLT1C LTR MaLR 173 390 0 1636 125 31 146 chr3 95988798 95989222 -131535356 - THE1C LTR MaLR 0 375 1 273 277 264 45 chr3 95989374 95989594 -131534984 + L2 LINE L2 2075 2342 -972 797 238 34 21 chr3 95990002 95990237 -131534341 + MER21-int LTR ERV1 30 267 -3924 180 111 0 0 chr3 95990237 95990264 -131534314 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 612 284 11 17 chr3 95990264 95990440 -131534138 + MER21-int LTR ERV1 257 431 -3760 1022 309 36 26 chr3 95990490 95990911 -131533667 + MER21-int LTR ERV1 1213 1637 -2554 2630 250 84 81 chr3 95990996 95992211 -131532367 + MER21-int LTR ERV1 1673 2837 -1354 394 408 31 17 chr3 95992211 95992503 -131532075 - L1MEd LINE L1 -5358 761 466 717 233 53 56 chr3 95992530 95992796 -131531782 + MLT1C LTR MaLR 8 272 -195 1737 127 80 0 chr3 95993074 95993350 -131531228 - AluY SINE Alu -11 300 3 195 200 0 89 chr3 95994484 95994529 -131530049 - L2 LINE L2 -1 3271 3231 225 0 0 0 chr3 95995059 95995084 -131529494 + (TG)n Simple_repeat Simple_repeat 2 26 0 982 251 71 22 chr3 95995087 95995410 -131529168 - MER2 DNA MER2_type 0 345 7 23 86 0 0 chr3 95995516 95995574 -131529004 + AT_rich Low_complexity Low_complexity 1 58 0 1793 216 44 18 chr3 95997263 95997717 -131526861 + MER31B LTR ERV1 1 466 0 326 318 5 64 chr3 95997866 95997994 -131526584 + L1M4 LINE L1 5192 5303 -843 1732 177 3 16 chr3 95997994 95998310 -131526268 + AluSx SINE Alu 1 312 0 326 318 5 64 chr3 95998310 95998401 -131526177 + L1M4 LINE L1 5303 5398 -748 315 266 62 18 chr3 95998483 95998596 -131525982 + MLT1J LTR MaLR 117 234 -277 1836 129 7 7 chr3 95998766 95999083 -131525495 - AluSx SINE Alu 0 320 4 237 65 0 0 chr3 95999285 95999316 -131525262 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1104 52 0 0 chr3 95999316 95999451 -131525127 - L1PA7 LINE L1 -18 6136 6002 8554 85 2 0 chr3 95999451 96000633 -131523945 + L1P LINE L1 3579 4763 -1383 343 187 19 65 chr3 96000761 96000811 -131523767 - MLT1J LTR MaLR -295 216 172 972 205 104 41 chr3 96000811 96001128 -131523450 - MER44D DNA MER2_type -1 608 2 343 187 19 65 chr3 96001128 96001184 -131523394 - MLT1J LTR MaLR -339 172 115 1895 58 4 0 chr3 96003562 96003804 -131520774 - L1PA7 LINE L1 0 6154 5912 357 366 37 12 chr3 96003927 96004091 -131520487 - MIR SINE MIR -3 259 92 23 54 0 0 chr3 96004302 96004339 -131520239 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr3 96004532 96004568 -131520010 + AT_rich Low_complexity Low_complexity 1 36 0 998 124 57 23 chr3 96004622 96004799 -131519779 - Tigger2 DNA MER2_type -256 2462 2280 225 280 0 0 chr3 96005234 96005284 -131519294 + MER52C LTR ERV1 33 82 -1196 * 5927 179 113 42 chr3 96005273 96006727 -131517851 + MER52A LTR ERV1 197 1753 -2 357 125 0 0 chr3 96006728 96006776 -131517802 - Tigger2 DNA MER2_type -2670 48 1 24 0 0 0 chr3 96006828 96006852 -131517726 + AT_rich Low_complexity Low_complexity 1 24 0 186 325 72 0 chr3 96007409 96007492 -131517086 + MIR SINE MIR 164 252 -10 819 316 26 36 chr3 96007752 96008221 -131516357 + LTR16B LTR ERVL 1 464 0 225 356 128 20 chr3 96008611 96008760 -131515818 - MIR3 SINE MIR -4 204 40 211 113 81 0 chr3 96010341 96010403 -131514175 + (TA)n Simple_repeat Simple_repeat 2 68 0 184 200 0 0 chr3 96010516 96010551 -131514027 - MIR SINE MIR -12 250 216 4413 211 21 15 chr3 96011346 96011869 -131512709 + L1MA9 LINE L1 5261 5779 -533 180 0 0 0 chr3 96011869 96011889 -131512689 + (TA)n Simple_repeat Simple_repeat 1 20 0 4413 211 21 15 chr3 96011889 96012406 -131512172 + L1MA9 LINE L1 5779 6312 0 593 329 74 29 chr3 96012594 96012904 -131511674 - L2 LINE L2 -1176 2138 1815 2542 179 15 19 chr3 96013135 96013610 -131510968 + Tigger1 DNA MER2_type 1 473 -1945 1340 185 4 33 chr3 96013620 96013890 -131510688 - AluJb SINE Alu -18 294 33 894 132 5 74 chr3 96013890 96014080 -131510498 + Tigger1 DNA MER2_type 469 645 -1773 215 31 31 0 chr3 96014211 96014243 -131510335 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 285 291 12 23 chr3 96014243 96014329 -131510249 + MIR SINE MIR 113 197 -65 22 70 0 0 chr3 96015376 96015419 -131509159 + AT_rich Low_complexity Low_complexity 1 43 0 1214 153 35 0 chr3 96016922 96017125 -131507453 - Tigger2 DNA MER2_type -10 2708 2499 940 290 58 17 chr3 96017127 96017589 -131506989 + L1PBa LINE L1 6 486 -6377 1382 258 113 54 chr3 96217615 96218424 -131306154 + L1MC3 LINE L1 6250 7105 -680 433 179 0 0 chr3 96218428 96218506 -131306072 + MLT1F1 LTR MaLR 48 125 -442 527 213 113 0 chr3 96218506 96218647 -131305931 + L1MD3 LINE L1 7404 7560 -435 1745 79 0 9 chr3 96218665 96218892 -131305686 - AluSg/x SINE Alu -7 303 79 280 240 10 73 chr3 96219016 96219112 -131305466 + MIR SINE MIR 173 262 0 406 236 32 0 chr3 96219607 96219730 -131304848 + L1MB7 LINE L1 6048 6174 -10 219 139 0 0 chr3 96220593 96220629 -131303949 + (TG)n Simple_repeat Simple_repeat 2 37 0 337 263 119 8 chr3 96220637 96220755 -131303823 - MIR SINE MIR -130 132 2 272 372 86 6 chr3 96221230 96221555 -131303023 - MARNA DNA Mariner -88 498 148 2092 124 72 23 chr3 96222242 96222589 -131301989 - THE1B LTR MaLR 0 364 1 483 272 69 37 chr3 96222812 96223058 -131301520 - MLT1I LTR MaLR -40 369 116 280 210 30 90 chr3 96223167 96223267 -131301311 - MIR SINE MIR -50 212 119 971 325 91 38 chr3 96223442 96224101 -131300477 + L2 LINE L2 2071 2764 -550 460 305 39 107 chr3 96224258 96224622 -131299956 + L2 LINE L2 2928 3266 -6 305 175 62 0 chr3 96225116 96225196 -131299382 - L1MB3 LINE L1 -8 6175 6091 4239 150 22 8 chr3 96225203 96226130 -131298448 - L1MA4 LINE L1 -278 6022 5083 36 23 0 0 chr3 96226377 96226420 -131298158 + AT_rich Low_complexity Low_complexity 1 43 0 348 152 0 0 chr3 96226773 96226839 -131297739 + (TA)n Simple_repeat Simple_repeat 1 66 0 1149 53 0 0 chr3 96227151 96227283 -131297295 - AluY SINE Alu -179 132 1 22 56 0 0 chr3 96228100 96228136 -131296442 + AT_rich Low_complexity Low_complexity 1 36 0 2051 176 110 36 chr3 96228979 96229761 -131294817 - Tigger3(Golem) DNA MER2_type -397 2632 1 22 35 0 0 chr3 96230393 96230422 -131294156 + AT_rich Low_complexity Low_complexity 1 29 0 2122 126 3 0 chr3 96230503 96230796 -131293782 - AluSg SINE Alu -16 294 1 442 139 13 0 chr3 96231393 96231472 -131293106 - L1PB4 LINE L1 -7 6149 6070 23 54 0 0 chr3 96231872 96231909 -131292669 + AT_rich Low_complexity Low_complexity 1 37 0 273 311 14 0 chr3 96232546 96232620 -131291958 + GA-rich Low_complexity Low_complexity 4 78 0 531 345 44 39 chr3 96232887 96233317 -131291261 + ERVL LTR ERVL 3259 3690 -1964 1350 313 87 35 chr3 96233339 96234292 -131290286 + ERVL LTR ERVL 3791 4793 -971 360 245 132 19 chr3 96235086 96235245 -131289333 + LTR33 LTR ERVL 40 216 -305 2035 144 133 16 chr3 96235507 96235890 -131288688 + MSTA LTR MaLR 1 428 0 412 255 69 0 chr3 96236037 96236139 -131288439 + L2 LINE L2 3205 3313 0 1707 241 37 45 chr3 96236472 96236961 -131287617 + L2 LINE L2 2425 2909 -405 3147 119 11 41 chr3 96236961 96237492 -131287086 + MER1A DNA MER1_type 15 529 0 240 349 108 0 chr3 96237497 96237626 -131286952 + L2 LINE L2 2914 3056 -257 305 329 108 19 chr3 96238794 96238952 -131285626 + MIR3 SINE MIR 37 208 0 1956 131 3 3 chr3 96239153 96239477 -131285101 - AluSx SINE Alu 0 324 1 28 0 0 0 chr3 96239515 96239543 -131285035 + AT_rich Low_complexity Low_complexity 1 28 0 838 266 50 17 chr3 96239556 96239797 -131284781 - MIR SINE MIR -1 261 13 2197 95 7 0 chr3 96239817 96240132 -131284446 - AluSp SINE Alu 0 317 1 1971 157 0 0 chr3 96240428 96240714 -131283864 - AluSx SINE Alu -26 286 1 237 65 0 0 chr3 96241452 96241530 -131283048 + (TG)n Simple_repeat Simple_repeat 1 109 0 237 65 0 0 chr3 96241530 96241561 -131283017 + (TG)n Simple_repeat Simple_repeat 2 32 0 4098 20 1 3 chr3 96241894 96242411 -131282167 + L1HS LINE L1 5645 6154 -1 246 148 0 0 chr3 96242412 96242466 -131282112 + (A)n Simple_repeat Simple_repeat 1 54 0 25 0 0 0 chr3 96243195 96243220 -131281358 + AT_rich Low_complexity Low_complexity 1 25 0 270 283 142 47 chr3 96243423 96243529 -131281049 + L2 LINE L2 3182 3297 -16 212 256 0 31 chr3 96244056 96244185 -131280393 + GA-rich Low_complexity Low_complexity 3 127 0 288 279 63 0 chr3 96244377 96244488 -131280090 - LTR33 LTR ERVL -305 216 99 378 243 15 8 chr3 96244788 96244960 -131279618 + MER41B LTR ERV1 112 419 -216 2226 167 41 9 chr3 96245096 96245563 -131279015 + L1MB7 LINE L1 5683 6164 -20 2683 139 73 49 chr3 96246774 96247204 -131277374 - MER21A LTR ERV1 -6 925 478 2257 94 0 3 chr3 96247204 96247502 -131277076 - AluY SINE Alu -14 297 1 2683 139 73 49 chr3 96247502 96247603 -131276975 - MER21A LTR ERV1 -453 478 381 1235 178 42 12 chr3 96247583 96247842 -131276736 - MER21A LTR ERV1 -651 280 14 * 396 200 0 0 chr3 96248401 96248486 -131276092 + GA-rich Low_complexity Low_complexity 2 86 0 248 319 58 0 chr3 96248490 96248559 -131276019 - MER91A DNA MER1_type 0 196 124 1217 119 11 0 chr3 96248559 96248735 -131275843 - AluSg/x SINE Alu -14 296 119 2786 25 0 0 chr3 96248753 96249067 -131275511 - AluYb8 SINE Alu -3 315 2 265 354 49 14 chr3 96249300 96249444 -131275134 - L2 LINE L2 -2113 1201 1053 533 267 163 4 chr3 96249485 96249725 -131274853 + MLT1L LTR MaLR 1 278 -337 5314 131 12 97 chr3 96249775 96250903 -131273675 + pTR5 LTR ERV1 31 269 -445 244 306 10 0 chr3 96250909 96251007 -131273571 + LTR30 LTR ERV1 544 642 -80 1570 85 0 5 chr3 96251010 96251234 -131273344 + pTR5 LTR ERV1 172 394 -2044 360 267 67 0 chr3 96251242 96251347 -131273231 + MLT1L LTR MaLR 351 462 -153 2076 129 0 3 chr3 96251464 96251758 -131272820 + AluSg SINE Alu 1 293 -17 1667 166 45 6 chr3 96251939 96252271 -131272307 - L1MB8 LINE L1 -6 6172 5828 2155 197 30 17 chr3 96252673 96253134 -131271444 + MLT1C LTR MaLR 1 467 0 467 308 170 37 chr3 96253170 96253868 -131270710 + L2 LINE L2 2534 3312 -1 452 349 67 36 chr3 96254025 96254363 -131270215 - L2 LINE L2 -256 3057 2708 357 237 72 0 chr3 96254381 96254478 -131270100 + MER5A DNA MER1_type 11 114 -75 210 177 65 65 chr3 96254451 96254513 -131270065 - MER5B DNA MER1_type -116 62 1 * 323 318 54 14 chr3 96254518 96254666 -131269912 - L2 LINE L2 -639 2675 2522 299 313 20 10 chr3 96254675 96254774 -131269804 - L2 LINE L2 -986 2328 2229 21 0 0 0 chr3 96254801 96254822 -131269756 + AT_rich Low_complexity Low_complexity 1 21 0 4651 157 4 24 chr3 96257189 96258173 -131266405 - L1 LINE L1 -1048 5098 4135 358 261 108 57 chr3 96259009 96259166 -131265412 + MIR SINE MIR 54 218 -44 2052 100 47 0 chr3 96261150 96261429 -131263149 + AluSg SINE Alu 2 293 -17 1221 97 0 0 chr3 96261429 96261670 -131262908 + (TA)n Simple_repeat Simple_repeat 1 241 0 3346 187 70 63 chr3 96262402 96263159 -131261419 - L1MD2 LINE L1 -21 6338 5588 2391 88 3 0 chr3 96263159 96263467 -131261111 - AluSc SINE Alu 0 309 1 3346 187 70 63 chr3 96263467 96263557 -131261021 - L1MD2 LINE L1 -771 5588 5500 2378 75 0 10 chr3 96263557 96263865 -131260713 - AluY SINE Alu -6 305 1 3346 187 70 63 chr3 96263865 96264041 -131260537 - L1MD2 LINE L1 -859 5500 5307 1825 152 3 40 chr3 96264042 96264210 -131260368 - AluSx SINE Alu -1 311 159 2732 83 53 16 chr3 96264210 96264642 -131259936 - LTR7 LTR ERV1 -2 448 1 1825 152 3 40 chr3 96264642 96264796 -131259782 - AluSx SINE Alu -153 159 1 1095 234 3 19 chr3 96264796 96265164 -131259414 - L1MD2 LINE L1 -850 5296 4935 25 31 0 0 chr3 96265594 96265626 -131258952 + AT_rich Low_complexity Low_complexity 1 32 0 1717 179 14 3 chr3 96265634 96265924 -131258654 + AluJo SINE Alu 1 293 -19 339 189 93 17 chr3 96266444 96266591 -131257987 - Charlie5 DNA MER1_type -141 2471 2358 351 203 27 0 chr3 96266698 96266772 -131257806 - MER5A DNA MER1_type -105 84 9 1378 181 87 0 chr3 96267759 96268057 -131256521 - MER33 DNA MER1_type 0 324 1 323 123 77 41 chr3 96270312 96270482 -131254096 + (TA)n Simple_repeat Simple_repeat 2 177 0 252 0 0 0 chr3 96271404 96271432 -131253146 + (TG)n Simple_repeat Simple_repeat 1 28 0 180 0 0 0 chr3 96271745 96271765 -131252813 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1914 151 3 0 chr3 96271971 96272255 -131252323 - AluJo SINE Alu -27 285 1 635 263 103 29 chr3 96272894 96272978 -131251600 + MIR SINE MIR 1 77 -185 1738 219 3 16 chr3 96272978 96273347 -131251231 + MLT1A1 LTR MaLR 1 364 -1 635 263 103 29 chr3 96273347 96273505 -131251073 + MIR SINE MIR 77 261 -1 3238 11 0 0 chr3 96273683 96274048 -131250530 + L1P1 LINE L1 5392 5756 -399 258 334 242 7 chr3 96274154 96274456 -131250122 + L2 LINE L2 2398 2770 -544 501 329 82 59 chr3 96274766 96275474 -131249104 + ERVL LTR ERVL 1000 1723 -4041 1002 310 109 7 chr3 96275524 96276155 -131248423 + ERVL LTR ERVL 1776 2519 -3245 591 140 0 11 chr3 96276165 96276258 -131248320 - Tigger7 DNA MER2_type -5 2486 2395 * 1362 204 8 4 chr3 96276256 96276496 -131248082 - Tigger7 DNA MER2_type -2220 267 27 307 339 80 17 chr3 96276511 96276813 -131247765 + ERVL LTR ERVL 2505 2824 -2830 23 33 0 0 chr3 96277785 96277815 -131246763 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 96277844 96277872 -131246706 + AT_rich Low_complexity Low_complexity 1 28 0 220 253 66 33 chr3 96278058 96278149 -131246429 - MIR SINE MIR -83 179 86 180 143 0 0 chr3 96278212 96278240 -131246338 + L2 LINE L2 3257 3284 -29 1259 233 45 45 chr3 96278779 96279153 -131245425 + MLT1A2 LTR MaLR 1 374 0 288 324 67 0 chr3 96279398 96279503 -131245075 - MIR SINE MIR -38 224 113 181 244 0 0 chr3 96279593 96279634 -131244944 + L2 LINE L2 3268 3308 -5 * 236 324 39 20 chr3 96279611 96279713 -131244865 - L2 LINE L2 -10 3303 3200 339 359 23 8 chr3 96279840 96279971 -131244607 + L2 LINE L2 3140 3272 0 234 252 15 104 chr3 96280523 96280658 -131243920 + L2 LINE L2 2959 3081 -191 243 0 0 0 chr3 96281014 96281041 -131243537 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 7327 33 11 0 chr3 96281041 96282237 -131242341 - L1PA5 LINE L1 -11 6143 4939 1298 97 5 0 chr3 96282237 96282423 -131242155 + L1PA5 LINE L1 4748 4934 -1212 181 250 36 36 chr3 96282777 96282833 -131241745 + L2 LINE L2 3204 3259 -54 302 341 85 0 chr3 96283190 96283319 -131241259 - MIR SINE MIR -71 191 52 38 16 0 47 chr3 96283367 96283431 -131241147 + AT_rich Low_complexity Low_complexity 1 61 0 1445 61 0 0 chr3 96283435 96283615 -131240963 + AluY SINE Alu 129 308 -3 462 318 77 12 chr3 96284565 96284866 -131239712 + MER102b DNA MER1_type 2 303 -38 537 305 83 40 chr3 96284982 96285460 -131239118 - L1MC4a LINE L1 -337 5828 5354 24 32 0 0 chr3 96285480 96285511 -131239067 + AT_rich Low_complexity Low_complexity 1 31 0 303 315 158 0 chr3 96285829 96285975 -131238603 - HAL1b LINE L1 -1 1347 1179 556 282 100 50 chr3 96286043 96286965 -131237613 - HAL1b LINE L1 -283 1065 12 1130 191 0 5 chr3 96287622 96287826 -131236752 + MER58A DNA MER1_type 22 224 0 1240 199 15 8 chr3 96289255 96289521 -131235057 + L1ME1 LINE L1 5890 6157 -9 1303 195 68 11 chr3 96289574 96289833 -131234745 - Charlie5 DNA MER1_type 0 2624 2336 1809 174 26 15 chr3 96289833 96290173 -131234405 + MER2 DNA MER2_type 1 344 0 1303 195 68 11 chr3 96290173 96290283 -131234295 - Charlie5 DNA MER1_type -288 2336 2234 578 181 0 31 chr3 96290284 96290411 -131234167 - Charlie5 DNA MER1_type -2489 123 1 378 0 0 0 chr3 96291691 96291733 -131232845 + (CA)n Simple_repeat Simple_repeat 2 43 0 513 186 51 59 chr3 96291929 96292047 -131232531 + FLAM_C SINE Alu 2 118 -15 199 27 27 54 chr3 96292052 96292089 -131232489 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 886 207 125 34 chr3 96293205 96293500 -131231078 + MER5C DNA MER1_type 3 324 0 851 281 58 24 chr3 96293646 96293938 -131230640 - MLT1I LTR MaLR -36 373 72 2885 99 32 5 chr3 96293962 96294394 -131230184 + MLT2A1 LTR ERVL 1 444 0 2162 108 0 10 chr3 96294764 96295059 -131229519 + AluSc SINE Alu 1 292 -17 1140 198 102 0 chr3 96295072 96295355 -131229223 + L1MD3 LINE L1 7667 7978 -17 27 49 0 0 chr3 96295539 96295580 -131228998 + AT_rich Low_complexity Low_complexity 1 41 0 509 88 12 0 chr3 96296837 96296917 -131227661 + (TA)n Simple_repeat Simple_repeat 2 82 0 2644 259 130 7 chr3 96297026 96297944 -131226634 + L1MEc LINE L1 35 1065 -5331 319 247 0 0 chr3 96298018 96298095 -131226483 + L1MEc LINE L1 2297 2373 -4023 2273 110 0 0 chr3 96298150 96298458 -131226120 + AluSg SINE Alu 1 308 -2 390 315 213 10 chr3 96298460 96298657 -131225921 + MIR SINE MIR 26 262 0 260 318 127 69 chr3 96299527 96299873 -131224705 + L2 LINE L2 1759 2124 -1190 2685 102 5 0 chr3 96299940 96300313 -131224265 - THE1C LTR MaLR 0 375 1 9010 99 36 120 chr3 96300315 96300351 -131224227 - THE1C-int LTR MaLR -2 1578 1541 2214 128 0 0 chr3 96300351 96300663 -131223915 - AluSx SINE Alu 0 312 1 9010 99 36 120 chr3 96300663 96302348 -131222230 - THE1C-int LTR MaLR -39 1541 1 2534 126 8 3 chr3 96302348 96302462 -131222116 - THE1C LTR MaLR 0 375 263 5002 119 31 8 chr3 96302462 96303224 -131221354 + LTR17 LTR ERV1 1 780 0 2534 126 8 3 chr3 96303224 96303482 -131221096 - THE1C LTR MaLR -112 263 1 489 306 95 46 chr3 96303492 96303818 -131220760 + L2 LINE L2 2431 2783 -531 3635 19 5 2 chr3 96303818 96304248 -131220330 - L1PA4 LINE L1 0 6155 5725 489 306 95 46 chr3 96304248 96304333 -131220245 + L2 LINE L2 2783 2862 -452 469 402 92 4 chr3 96304447 96304728 -131219850 + L2 LINE L2 2966 3271 -1 540 256 35 6 chr3 96305678 96305850 -131218728 + MER104 DNA MER2_type 1 177 -3 222 37 0 0 chr3 96306133 96306160 -131218418 + (CAGAGA)n Simple_repeat Simple_repeat 2 28 0 201 348 0 0 chr3 96306189 96306258 -131218320 + GA-rich Low_complexity Low_complexity 2 70 0 1720 161 0 0 chr3 96307377 96307637 -131216941 + AluJb SINE Alu 1 260 -52 2378 39 0 7 chr3 96308128 96308442 -131216136 - AluY SINE Alu 0 312 1 214 314 0 0 chr3 96309568 96309619 -131214959 - L2 LINE L2 -12 3301 3251 377 315 8 39 chr3 96309754 96309881 -131214697 - MIR SINE MIR -122 140 18 452 304 20 27 chr3 96309914 96310062 -131214516 + MIR SINE MIR 114 260 -2 26 0 0 0 chr3 96310158 96310184 -131214394 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr3 96310262 96310285 -131214293 + AT_rich Low_complexity Low_complexity 1 23 0 767 264 48 74 chr3 96311089 96311509 -131213069 + MLT1I LTR MaLR 1 409 0 807 21 0 0 chr3 96311903 96311999 -131212579 + L1P LINE L1 4986 5081 -1065 1313 174 105 81 chr3 96312457 96312801 -131211777 - MLT1A2 LTR MaLR 0 374 23 27 0 0 0 chr3 96313044 96313071 -131211507 + AT_rich Low_complexity Low_complexity 1 27 0 1508 145 83 28 chr3 96313213 96313502 -131211076 + AluSx SINE Alu 2 306 -6 2119 100 7 0 chr3 96313566 96313879 -131210699 + AluSx SINE Alu 1 315 0 652 296 0 11 chr3 96315037 96315216 -131209362 + MER69A DNA AcHobo 1 177 0 209 261 203 0 chr3 96316010 96316079 -131208499 + L2 LINE L2 3230 3312 -1 2227 100 3 0 chr3 96316360 96316659 -131207919 - AluSq SINE Alu -13 300 1 9791 35 2 2 chr3 96316796 96318759 -131205819 - L1PA4 LINE L1 0 6155 4199 442 339 22 11 chr3 96320193 96320373 -131204205 - MIR3 SINE MIR -7 201 20 213 241 17 17 chr3 96321217 96321275 -131203303 + MIR SINE MIR 91 148 -114 2106 128 6 6 chr3 96321705 96322017 -131202561 - AluSx SINE Alu 0 312 1 260 208 26 65 chr3 96323163 96323240 -131201338 - L3 LINE CR1 -178 1399 1326 190 340 0 0 chr3 96323397 96323444 -131201134 + MIR SINE MIR 110 156 -106 1815 154 0 31 chr3 96323633 96323767 -131200811 + AluJo SINE Alu 1 138 -167 2013 130 7 13 chr3 96323767 96324068 -131200510 + AluSx SINE Alu 1 299 -13 1815 154 0 31 chr3 96324068 96324247 -131200331 + AluJo SINE Alu 138 305 0 256 380 35 19 chr3 96324392 96324705 -131199873 + L2 LINE L2 2463 2780 -534 412 299 110 18 chr3 96325370 96325534 -131199044 + MIR3 SINE MIR 10 188 -20 351 261 109 43 chr3 96326087 96326225 -131198353 - L2 LINE L2 -4 3309 3163 183 277 0 21 chr3 96326248 96326295 -131198283 + L2 LINE L2 3258 3303 -10 301 259 59 65 chr3 96327512 96327682 -131196896 + MLT1H LTR MaLR 57 225 -324 28 29 0 0 chr3 96327926 96327961 -131196617 + AT_rich Low_complexity Low_complexity 1 35 0 32 43 0 0 chr3 96329247 96329293 -131195285 + AT_rich Low_complexity Low_complexity 1 46 0 184 345 101 8 chr3 96329887 96330006 -131194572 + L2 LINE L2 3182 3311 -2 272 287 43 26 chr3 96331562 96331677 -131192901 + MLT1L LTR MaLR 4 120 -495 4632 126 292 81 chr3 96331683 96333072 -131191506 - pTR5 LTR ERV1 0 2438 757 1097 274 74 31 chr3 96333072 96333557 -131191021 + MLT1L LTR MaLR 108 613 -2 2638 0 0 0 chr3 96333642 96333963 -131190615 + AluYa5 SINE Alu 1 321 0 2083 234 40 58 chr3 96335787 96336385 -131188193 - MLT1E LTR MaLR -6 587 1 197 65 32 0 chr3 96337224 96337255 -131187323 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 297 0 0 0 chr3 96338409 96338442 -131186136 + (CA)n Simple_repeat Simple_repeat 1 33 0 536 315 116 32 chr3 96338505 96338911 -131185667 - LTR67 LTR ERVL -7 550 111 184 267 12 81 chr3 96338932 96339018 -131185560 - L2 LINE L2 -42 3230 3151 301 258 43 0 chr3 96339178 96339271 -131185307 + MLT1J1 LTR MaLR 346 442 -4 200 342 53 46 chr3 96339599 96339751 -131184827 + L2 LINE L2 3142 3294 -19 640 235 7 0 chr3 96339940 96340089 -131184489 + MIR SINE MIR 111 260 -2 1377 194 34 31 chr3 96340358 96340652 -131183926 - MSTB LTR MaLR 0 426 132 2785 182 2 0 chr3 96340654 96341148 -131183430 - MSTB-int LTR MaLR -1156 495 1 2164 186 47 5 chr3 96341148 96341557 -131183021 - MSTB LTR MaLR 0 426 1 1538 155 7 40 chr3 96343393 96343670 -131180908 - AluJo SINE Alu -13 299 32 181 294 0 0 chr3 96344018 96344069 -131180509 - L2 LINE L2 -4 3309 3259 209 326 20 41 chr3 96344767 96344865 -131179713 + MIR3 SINE MIR 9 104 -104 262 272 82 27 chr3 96344981 96345128 -131179450 + MER103 DNA DNA 3 157 -9 28 0 0 0 chr3 96345435 96345463 -131179115 + AT_rich Low_complexity Low_complexity 1 28 0 360 258 149 25 chr3 96345715 96345878 -131178700 + MIR SINE MIR 2 182 -65 5393 155 29 24 chr3 96346304 96346973 -131177605 - L1MA4 LINE L1 -2 6298 5634 1512 151 72 77 chr3 96346973 96347350 -131177228 + THE1C LTR MaLR 1 375 0 5393 155 29 24 chr3 96347350 96348564 -131176014 - L1MA4 LINE L1 -666 5634 4407 30 0 0 0 chr3 96348635 96348665 -131175913 + AT_rich Low_complexity Low_complexity 1 30 0 182 283 189 19 chr3 96349472 96349578 -131175000 - L2 LINE L2 -1 3271 3148 1969 150 7 0 chr3 96349773 96350067 -131174511 + AluSx SINE Alu 1 296 -16 522 190 95 15 chr3 96350073 96350210 -131174368 + L1MA10 LINE L1 6180 6327 -7 184 0 97 0 chr3 96350215 96350246 -131174332 + A-rich Low_complexity Low_complexity 2 35 0 444 304 116 24 chr3 96352259 96352599 -131171979 - L3 LINE CR1 -13 1564 1224 916 193 88 24 chr3 96352606 96352855 -131171723 - MER63B DNA MER1_type -8 428 164 1298 184 11 64 chr3 96352856 96353015 -131171563 + MLT1A1 LTR MaLR 1 140 -225 2103 145 0 0 chr3 96353015 96353319 -131171259 + AluSx SINE Alu 3 306 -6 1298 184 11 64 chr3 96353319 96353441 -131171137 + MLT1A1 LTR MaLR 140 267 -98 252 0 0 0 chr3 96353441 96353469 -131171109 + (CTTG)n Simple_repeat Simple_repeat 2 29 0 708 103 16 16 chr3 96353469 96353595 -131170983 + (TTCC)n Simple_repeat Simple_repeat 2 127 0 1677 156 0 4 chr3 96353625 96353881 -131170697 - AluSx SINE Alu -28 284 30 440 160 0 0 chr3 96353884 96353959 -131170619 + MLT1A1 LTR MaLR 291 365 0 707 240 0 71 chr3 96353960 96354143 -131170435 - MER63B DNA MER1_type -265 171 2 333 409 7 0 chr3 96354560 96354714 -131169864 + L3 LINE CR1 1008 1162 -415 5744 44 6 11 chr3 96354988 96355713 -131168865 - L1PA5 LINE L1 -1 6153 5433 207 0 0 0 chr3 96356050 96356073 -131168505 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 214 280 37 93 chr3 96356235 96356342 -131168236 - L2 LINE L2 -1086 2228 2128 970 119 0 0 chr3 96358424 96358558 -131166020 + LTR8 LTR ERV1 558 691 0 272 286 44 11 chr3 96358609 96358700 -131165878 + MLT2F LTR ERVL 568 661 -2 26 50 0 0 chr3 96361615 96361655 -131162923 + AT_rich Low_complexity Low_complexity 1 40 0 205 360 100 0 chr3 96361886 96361986 -131162592 + L2 LINE L2 3204 3313 0 1692 198 40 20 chr3 96362563 96362912 -131161666 - MLT1A1 LTR MaLR 0 365 10 555 324 64 28 chr3 96363005 96363397 -131161181 + MLT1J LTR MaLR 69 474 -37 703 303 40 60 chr3 96364018 96364371 -131160207 - L2 LINE L2 -18 3295 2950 24 0 0 0 chr3 96364876 96364900 -131159678 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 96369900 96369921 -131154657 + AT_rich Low_complexity Low_complexity 1 21 0 188 404 61 0 chr3 96370288 96370387 -131154191 + L2 LINE L2 3137 3241 -31 312 228 47 6 chr3 96370595 96370766 -131153812 + (TA)n Simple_repeat Simple_repeat 2 179 0 217 337 157 11 chr3 96371634 96371723 -131152855 - L2 LINE L2 -48 3224 3123 190 322 140 7 chr3 96372022 96372165 -131152413 + L2 LINE L2 3151 3312 -1 227 261 43 11 chr3 96372231 96372323 -131152255 + L1MC4 LINE L1 6611 6705 -1337 260 297 131 28 chr3 96372421 96372566 -131152012 - MIR3 SINE MIR -43 165 6 25 31 0 0 chr3 96373344 96373376 -131151202 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr3 96373805 96373828 -131150750 + AT_rich Low_complexity Low_complexity 1 23 0 427 288 49 57 chr3 96374025 96374289 -131150289 + MIR SINE MIR 1 262 0 186 43 0 0 chr3 96374442 96374465 -131150113 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 802 304 47 0 chr3 96374936 96375189 -131149389 + ERVL LTR ERVL 2391 2655 -3109 1058 236 10 5 chr3 96375191 96375399 -131149179 - MLT1A1 LTR MaLR 0 365 157 482 224 86 9 chr3 96375410 96375526 -131149052 - FLAM_A SINE Alu -13 129 5 815 153 13 20 chr3 96375538 96375688 -131148890 - MLT1A1 LTR MaLR -213 152 4 325 338 5 39 chr3 96375714 96375867 -131148711 + ERVL LTR ERVL 2643 2789 -2865 2406 94 26 42 chr3 96375867 96376196 -131148382 + THE1C LTR MaLR 1 325 -50 2315 91 3 0 chr3 96376196 96376494 -131148084 + AluSq SINE Alu 1 299 -14 2406 94 26 42 chr3 96376494 96376545 -131148033 + THE1C LTR MaLR 325 375 0 325 338 5 39 chr3 96376545 96376598 -131147980 + ERVL LTR ERVL 2789 2842 -2812 233 288 0 0 chr3 96377459 96377518 -131147060 + (TAG)n Simple_repeat Simple_repeat 1 59 0 554 319 0 16 chr3 96377561 96377746 -131146832 - MIR SINE MIR -75 187 6 22 0 0 0 chr3 96379098 96379120 -131145458 + AT_rich Low_complexity Low_complexity 1 22 0 192 346 55 31 chr3 96380026 96380153 -131144425 + MIR SINE MIR 4 133 -129 745 178 14 0 chr3 96380653 96380799 -131143779 - MER69 DNA AcHobo 0 2526 2379 478 172 81 10 chr3 96381343 96381442 -131143136 - MER5B DNA MER1_type -1 177 72 185 257 0 0 chr3 96381440 96381475 -131143103 + MER5B DNA MER1_type 144 178 0 * 234 224 35 47 chr3 96382292 96382377 -131142201 - MER112 DNA MER1_type -32 228 145 25 51 0 0 chr3 96382864 96382903 -131141675 + AT_rich Low_complexity Low_complexity 1 39 0 2550 117 43 2 chr3 96382932 96383352 -131141226 - LTR23 LTR ERV1 0 437 1 2406 92 0 0 chr3 96383475 96383779 -131140799 + AluSc SINE Alu 1 304 -5 501 271 95 49 chr3 96383887 96384171 -131140407 - L2 LINE L2 -1 3312 3016 316 136 15 15 chr3 96385209 96385275 -131139303 + CT-rich Low_complexity Low_complexity 3 68 0 287 138 35 0 chr3 96385279 96385337 -131139241 + C-rich Low_complexity Low_complexity 5 64 0 1804 137 22 7 chr3 96385341 96385611 -131138967 - AluSx SINE Alu -38 274 1 903 275 129 21 chr3 96385878 96386343 -131138235 + L2 LINE L2 2100 2614 -700 551 251 11 70 chr3 96386399 96386586 -131137992 - MER5B DNA MER1_type -2 176 1 1587 111 72 46 chr3 96386654 96387055 -131137523 - MER4A LTR ERV1 0 664 110 2234 109 7 7 chr3 96387055 96387359 -131137219 - AluSq SINE Alu -9 304 1 1587 111 72 46 chr3 96387359 96387472 -131137106 - MER4A LTR ERV1 -554 110 1 371 281 237 0 chr3 96387472 96387607 -131136971 + MER5A DNA MER1_type 19 185 -4 310 356 126 13 chr3 96387609 96387839 -131136739 + MIR SINE MIR 7 262 0 524 70 30 20 chr3 96388563 96388663 -131135915 + (TCTA)n Simple_repeat Simple_repeat 2 102 0 202 345 0 0 chr3 96390327 96390385 -131134193 + L2 LINE L2 2985 3042 -230 1941 191 62 24 chr3 96390607 96391057 -131133521 - MLT1C LTR MaLR 0 467 1 22 0 0 0 chr3 96391642 96391664 -131132914 + AT_rich Low_complexity Low_complexity 1 22 0 246 81 0 0 chr3 96391871 96391908 -131132670 + (TG)n Simple_repeat Simple_repeat 2 38 0 372 43 0 0 chr3 96393439 96393485 -131131093 + (CA)n Simple_repeat Simple_repeat 2 47 0 433 281 39 108 chr3 96395401 96395632 -131128946 + MIR SINE MIR 48 262 0 2639 168 6 25 chr3 96396136 96396299 -131128279 + MLT1C LTR MaLR 1 166 -301 2284 108 0 0 chr3 96396299 96396606 -131127972 - AluY SINE Alu -4 307 1 2639 168 6 25 chr3 96396606 96396917 -131127661 + MLT1C LTR MaLR 166 466 -1 1496 266 32 48 chr3 96396983 96397479 -131127099 - MLT1E LTR MaLR -13 580 93 824 93 0 0 chr3 96397480 96397588 -131126990 - AluY SINE Alu -18 293 186 1955 101 8 11 chr3 96397588 96397856 -131126722 - AluY SINE Alu -44 267 1 239 266 0 31 chr3 96397856 96397920 -131126658 - MLT1E LTR MaLR -491 102 41 246 32 0 0 chr3 96398015 96398046 -131126532 + (CA)n Simple_repeat Simple_repeat 2 32 0 43893 46 0 1 chr3 96398335 96404490 -131120088 + L1PA4 LINE L1 1 6152 -3 24 0 0 0 chr3 96405783 96405807 -131118771 + AT_rich Low_complexity Low_complexity 1 24 0 989 108 42 113 chr3 96405866 96406078 -131118500 - MER30 DNA MER1_type -33 197 1 269 281 46 72 chr3 96406355 96406508 -131118070 + L2 LINE L2 2352 2500 -814 563 307 69 35 chr3 96407218 96407449 -131117129 + MIR SINE MIR 12 250 -12 276 256 51 0 chr3 96407724 96407802 -131116776 + MER94 DNA DNA 41 122 -12 252 382 0 21 chr3 96408357 96408501 -131116077 + L2 LINE L2 3173 3313 0 485 335 30 0 chr3 96409452 96409616 -131114962 - MIR3 SINE MIR -7 201 33 243 0 0 0 chr3 96409734 96409761 -131114817 + (TG)n Simple_repeat Simple_repeat 2 28 0 522 239 55 0 chr3 96409784 96409893 -131114685 - FLAM_A SINE Alu -18 115 1 24 0 0 0 chr3 96410125 96410149 -131114429 + AT_rich Low_complexity Low_complexity 1 24 0 395 317 20 0 chr3 96410151 96410252 -131114326 + MER5A DNA MER1_type 4 106 -83 196 289 207 37 chr3 96410190 96410325 -131114253 - MER5A DNA MER1_type -31 158 1 * 341 357 20 30 chr3 96410881 96411080 -131113498 + MIR3 SINE MIR 5 201 -7 352 284 138 28 chr3 96411101 96411319 -131113259 + MIR SINE MIR 20 261 -1 285 385 15 0 chr3 96412416 96412546 -131112032 - MIR SINE MIR -11 251 120 660 267 67 9 chr3 96413029 96413254 -131111324 + LTR33A LTR ERVL 284 521 -2 1323 289 22 11 chr3 96413388 96413851 -131110727 - L1ME3 LINE L1 -211 5951 5484 640 256 77 40 chr3 96415270 96415567 -131109011 + HAL1 LINE L1 84 391 -2116 330 258 11 21 chr3 96415591 96415684 -131108894 - HAL1 LINE L1 -151 2356 2265 254 293 19 0 chr3 96415714 96415820 -131108758 - HAL1 LINE L1 -321 2186 2079 189 346 75 37 chr3 96416238 96416345 -131108233 - L2 LINE L2 -216 3056 2946 185 348 77 58 chr3 96416394 96416538 -131108040 - L2 LINE L2 -635 2679 2539 2306 135 25 0 chr3 96416538 96416893 -131107685 - THE1B LTR MaLR 0 364 1 185 348 77 58 chr3 96416893 96417127 -131107451 - L2 LINE L2 -775 2539 2294 2285 115 19 25 chr3 96420420 96420786 -131103792 - THE1B LTR MaLR 0 364 1 181 316 81 59 chr3 96420849 96420985 -131103593 + L2 LINE L2 3134 3272 0 297 155 0 0 chr3 96421574 96421632 -131102946 + CT-rich Low_complexity Low_complexity 1 58 0 205 194 0 0 chr3 96421703 96421739 -131102839 + L2 LINE L2 3268 3303 -10 263 259 0 0 chr3 96424615 96424673 -131099905 + MER94 DNA DNA 1 58 -76 1255 339 122 16 chr3 96425031 96425969 -131098609 + L2 LINE L2 1574 2610 -704 2238 125 14 6 chr3 96427355 96427707 -131096871 + THE1A LTR MaLR 1 355 0 2054 126 36 0 chr3 96428154 96428455 -131096123 - AluSx SINE Alu 0 312 1 2108 96 18 4 chr3 96429209 96429538 -131095040 + AluSx SINE Alu 1 333 0 814 214 22 58 chr3 96429767 96430048 -131094530 - L1MA9 LINE L1 -6 6162 6013 2212 193 68 22 chr3 96431635 96432090 -131092488 - MLT1D LTR MaLR -8 497 22 29 70 0 0 chr3 96432126 96432183 -131092395 + AT_rich Low_complexity Low_complexity 1 57 0 25 31 0 0 chr3 96433948 96433980 -131090598 + AT_rich Low_complexity Low_complexity 1 32 0 302 80 20 0 chr3 96436426 96436476 -131088102 + (GA)n Simple_repeat Simple_repeat 2 52 0 2097 121 4 0 chr3 96436537 96436865 -131087713 + AluSp SINE Alu 4 332 0 1978 139 27 0 chr3 96438606 96438907 -131085671 + AluSx SINE Alu 1 309 -3 24 0 0 0 chr3 96439353 96439377 -131085201 + AT_rich Low_complexity Low_complexity 1 24 0 620 13 13 0 chr3 96439599 96439676 -131084902 + (TCTA)n Simple_repeat Simple_repeat 3 80 0 23 0 0 0 chr3 96440031 96440054 -131084524 + AT_rich Low_complexity Low_complexity 1 23 0 217 340 75 9 chr3 96440641 96440747 -131083831 - MER5A DNA MER1_type -30 159 47 524 223 91 118 chr3 96441855 96442227 -131082351 + MLT1J LTR MaLR 101 462 -49 511 318 81 58 chr3 96442306 96442803 -131081775 + L3 LINE CR1 911 1418 -159 326 358 67 0 chr3 96444607 96444786 -131079792 - MIR SINE MIR -15 247 57 411 294 66 10 chr3 96444786 96444983 -131079595 - L2 LINE L2 -976 2338 2131 2257 106 3 3 chr3 96445142 96445453 -131079125 + AluSx SINE Alu 1 311 -1 22 35 0 0 chr3 96445982 96446011 -131078567 + AT_rich Low_complexity Low_complexity 1 29 0 1113 94 0 0 chr3 96446477 96446626 -131077952 + L1PA14 LINE L1 5793 5941 -220 315 253 74 0 chr3 96447615 96447710 -131076868 + MIR SINE MIR 71 172 -90 1733 229 11 6 chr3 96447759 96448122 -131076456 - MLT1A1 LTR MaLR 0 365 1 185 322 111 33 chr3 96448412 96448502 -131076076 - L2 LINE L2 -53 3219 3123 28 0 0 0 chr3 96450367 96450395 -131074183 + AT_rich Low_complexity Low_complexity 1 28 0 2407 67 0 0 chr3 96450739 96451037 -131073541 - AluY SINE Alu -13 298 1 936 223 22 44 chr3 96451106 96451335 -131073243 - MER58A DNA MER1_type 0 224 1 198 0 0 0 chr3 96451896 96451918 -131072660 + (T)n Simple_repeat Simple_repeat 1 22 0 360 0 0 0 chr3 96453610 96453650 -131070928 + (TG)n Simple_repeat Simple_repeat 1 40 0 293 254 14 0 chr3 96504605 96504676 -131019902 - MER63 DNA MER1_type -310 752 681 3097 114 11 2 chr3 96505675 96506129 -131018449 - MER1A DNA MER1_type 0 529 72 596 346 70 15 chr3 96507632 96508031 -131016547 + LTR16A LTR ERVL 25 445 -5 1238 339 44 28 chr3 96508113 96508903 -131015675 + HERV16 LTR ERVL 91 893 -4103 654 329 51 14 chr3 96508931 96509284 -131015294 + HERV16 LTR ERVL 986 1351 -3645 1000 304 28 34 chr3 96509431 96509904 -131014674 + HERV16 LTR ERVL 1578 2047 -2949 710 246 133 55 chr3 96509972 96510265 -131014313 + HERV16 LTR ERVL 2159 2474 -2522 862 228 31 27 chr3 96510268 96510527 -131014051 - MER96B DNA MER1_type? -157 260 1 965 318 106 43 chr3 96510532 96511711 -131012867 + HERV16 LTR ERVL 2499 3821 -1943 344 369 16 5 chr3 96511982 96512169 -131012409 + HERV16 LTR ERVL 4065 4253 -1401 403 358 75 38 chr3 96512498 96512984 -131011594 + HERV16 LTR ERVL 4770 5282 -482 1878 103 3 59 chr3 96512984 96513274 -131011304 - AluSx SINE Alu -22 290 17 403 358 75 38 chr3 96513274 96513363 -131011215 + HERV16 LTR ERVL 5282 5366 -398 548 288 72 8 chr3 96513610 96513860 -131010718 + LTR16A LTR ERVL 179 444 -6 278 383 27 27 chr3 96514071 96514220 -131010358 + MIR3 SINE MIR 39 187 -21 575 301 49 0 chr3 96514547 96514690 -131009888 - L2 LINE L2 0 3272 3123 23 0 0 0 chr3 96515694 96515717 -131008861 + AT_rich Low_complexity Low_complexity 1 23 0 1380 253 50 10 chr3 96515930 96516510 -131008068 + MER114 LTR ERV 27 629 -19 1790 175 138 5 chr3 96516571 96516949 -131007629 + MSTA LTR MaLR 1 428 0 882 219 19 47 chr3 96517460 96517675 -131006903 - MER63A DNA MER1_type -1 209 1 1798 205 70 33 chr3 96518642 96519125 -131005453 - MLT1D LTR MaLR -4 501 1 21 57 0 0 chr3 96520073 96520108 -131004470 + AT_rich Low_complexity Low_complexity 1 35 0 34 55 0 0 chr3 96520273 96520328 -131004250 + AT_rich Low_complexity Low_complexity 1 55 0 1543 211 99 16 chr3 96520348 96520774 -131003804 - MLT1C LTR MaLR -4 463 3 811 171 0 21 chr3 96521145 96521285 -131003293 + FLAM_C SINE Alu 1 137 -6 1512 173 45 14 chr3 96521734 96522023 -131002555 - AluJo SINE Alu -12 300 3 196 269 143 12 chr3 96523227 96523342 -131001236 + MIR SINE MIR 17 152 -62 1614 201 116 80 chr3 96524035 96524788 -130999790 - LTR1B LTR ERV1 0 826 1 33 25 0 0 chr3 96526020 96526060 -130998518 + AT_rich Low_complexity Low_complexity 1 40 0 219 69 0 0 chr3 96526447 96526476 -130998102 + (CAT)n Simple_repeat Simple_repeat 2 30 0 2361 88 0 3 chr3 96527030 96527338 -130997240 + AluSq SINE Alu 1 307 -6 249 327 20 20 chr3 96527556 96527657 -130996921 + MIR SINE MIR 5 105 -157 2021 130 0 19 chr3 96528243 96528551 -130996027 - AluSx SINE Alu -10 302 1 297 51 0 0 chr3 96529835 96529874 -130994704 + (TC)n Simple_repeat Simple_repeat 2 40 0 285 340 42 21 chr3 96531073 96531264 -130993314 + L1ME LINE L1 5670 5864 -306 1964 135 6 6 chr3 96531272 96531591 -130992987 - L1M2 LINE L1 -558 5733 5415 527 112 82 0 chr3 96531591 96531689 -130992889 + L1MA7 LINE L1 6185 6290 -1 228 329 165 6 chr3 96532832 96532990 -130991588 + MIR3 SINE MIR 8 190 -18 204 271 0 0 chr3 96533443 96533491 -130991087 + CT-rich Low_complexity Low_complexity 4 51 0 231 188 0 0 chr3 96534270 96534318 -130990260 + CT-rich Low_complexity Low_complexity 2 49 0 279 167 0 0 chr3 96536289 96536355 -130988223 + (TA)n Simple_repeat Simple_repeat 1 66 0 1106 278 43 52 chr3 96537709 96538271 -130986307 + MER68 LTR ERV1 2 558 -4 645 330 30 35 chr3 96538683 96539022 -130985556 + L1MEd LINE L1 426 762 -5357 5087 182 8 1 chr3 96539348 96540306 -130984272 - L1P LINE L1 -784 5362 4398 1432 275 163 12 chr3 96540307 96540376 -130984202 - L2 LINE L2 -1531 1783 1726 2132 118 7 0 chr3 96540376 96540680 -130983898 - AluSg SINE Alu -4 306 1 1432 275 163 12 chr3 96540680 96541181 -130983397 - L2 LINE L2 -1588 1726 1127 194 0 0 37 chr3 96541952 96541979 -130982599 + (TAAAAA)n Simple_repeat Simple_repeat 2 27 0 2166 284 113 38 chr3 96542006 96542166 -130982412 - L2 LINE L2 -2285 1029 882 1949 147 10 0 chr3 96542166 96542458 -130982120 - AluSx SINE Alu -17 295 1 2166 284 113 38 chr3 96542458 96543253 -130981325 - L2 LINE L2 -2432 882 2 2305 172 26 7 chr3 96544560 96544978 -130979600 + MSTB LTR MaLR 1 426 0 7939 183 16 19 chr3 96544978 96546460 -130978118 + MSTB-int LTR MaLR 1 1478 -173 2100 141 48 20 chr3 96546479 96546833 -130977745 + THE1B LTR MaLR 1 364 0 1002 112 12 35 chr3 96546833 96547003 -130977575 + MSTB-int LTR MaLR 1486 1651 0 2078 169 61 20 chr3 96547003 96547412 -130977166 + MSTB LTR MaLR 1 426 0 186 308 26 0 chr3 96548347 96548425 -130976153 - L2 LINE L2 -363 2951 2872 1501 163 45 35 chr3 96548456 96548745 -130975833 - MLT2B1 LTR ERVL -228 292 1 2630 191 59 22 chr3 96548746 96549403 -130975175 - L1MC1 LINE L1 -459 5874 5193 3554 129 51 15 chr3 96549483 96550072 -130974506 + MER4B LTR ERV1 1 610 0 318 162 59 0 chr3 96552467 96552535 -130972043 + MLT1K LTR MaLR 513 584 -4 292 184 35 140 chr3 96553795 96553909 -130970669 + MIR SINE MIR 61 162 -100 744 191 105 0 chr3 96554828 96554980 -130969598 - FRAM SINE Alu 0 176 9 543 276 13 32 chr3 96556671 96556827 -130967751 - LTR33 LTR ERVL -368 153 1 411 56 0 0 chr3 96557386 96557440 -130967138 + (TG)n Simple_repeat Simple_repeat 1 54 0 284 235 29 0 chr3 96557444 96557512 -130967066 + MIR SINE MIR 187 256 -6 391 233 0 0 chr3 96557821 96557907 -130966671 - L1MD3 LINE L1 -1677 6318 6233 181 287 184 0 chr3 96559273 96559360 -130965218 + L3 LINE CR1 358 460 -1117 642 318 30 33 chr3 96559597 96559899 -130964679 + L3 LINE CR1 559 859 -718 418 169 0 0 chr3 96560211 96560282 -130964296 + MLT2B3 LTR ERVL 1 71 -483 2031 206 25 82 chr3 96560380 96560889 -130963689 + MLT2B3 LTR ERVL 75 554 0 1658 136 101 20 chr3 96561100 96561446 -130963132 + THE1C LTR MaLR 1 374 -1 520 289 75 46 chr3 96561800 96562080 -130962498 + MLT1I LTR MaLR 91 378 -31 277 255 184 0 chr3 96562237 96562335 -130962243 + L3 LINE CR1 1209 1324 -253 2212 100 0 34 chr3 96562807 96563128 -130961450 - AluSg SINE Alu 0 310 1 712 186 0 21 chr3 96563143 96563288 -130961290 - FLAM_C SINE Alu -1 142 1 207 255 0 0 chr3 96563328 96563379 -130961199 + MIR SINE MIR 156 206 -56 221 238 0 0 chr3 96563419 96563461 -130961117 + (CAT)n Simple_repeat Simple_repeat 3 44 0 1909 171 14 11 chr3 96564084 96564446 -130960132 - MLT1A1 LTR MaLR -2 363 1 769 219 13 71 chr3 96567081 96567305 -130957273 + MLT1B LTR MaLR 1 211 -179 10387 27 0 0 chr3 96567305 96568566 -130956012 - L1P LINE L1 -2525 3621 2361 530 31 0 0 chr3 96568666 96568731 -130955847 - L1P LINE L1 -3780 2366 2302 367 0 0 0 chr3 96569268 96569308 -130955270 + L1P LINE L1 3554 3593 -2553 1066 227 66 61 chr3 96569525 96569904 -130954674 - MLT1C LTR MaLR -53 414 34 187 289 0 0 chr3 96571110 96571155 -130953423 + MIR3 SINE MIR 158 202 -6 213 299 0 30 chr3 96571602 96571669 -130952909 + CT-rich Low_complexity Low_complexity 3 67 0 21 36 0 0 chr3 96572087 96572115 -130952463 + AT_rich Low_complexity Low_complexity 1 28 0 1714 169 72 171 chr3 96572306 96573112 -130951466 + LTR8A LTR ERV1 1 726 -1 344 188 29 0 chr3 96573320 96573389 -130951189 + L1MCa LINE L1 144 214 -6212 1204 122 10 36 chr3 96573394 96573590 -130950988 + THE1B LTR MaLR 174 364 0 262 282 36 9 chr3 96573590 96573700 -130950878 + L1ME4a LINE L1 5986 6098 -23 25 0 0 0 chr3 96574172 96574197 -130950381 + AT_rich Low_complexity Low_complexity 1 25 0 312 305 43 30 chr3 96574909 96575050 -130949528 + L1ME4a LINE L1 5778 5923 -198 1213 181 91 81 chr3 96575050 96575348 -130949230 + AluJb SINE Alu 1 301 -1 312 305 43 30 chr3 96575348 96575370 -130949208 + L1ME4a LINE L1 5923 5943 -178 1788 131 7 29 chr3 96575466 96575772 -130948806 + L1PA16 LINE L1 5867 6165 -1 35 41 0 0 chr3 96575811 96575860 -130948718 + AT_rich Low_complexity Low_complexity 1 49 0 258 32 0 0 chr3 96576388 96576419 -130948159 + (TG)n Simple_repeat Simple_repeat 1 31 0 180 77 0 0 chr3 96576418 96576444 -130948134 + (CAGAGA)n Simple_repeat Simple_repeat 5 30 0 * 1116 198 172 38 chr3 96577586 96577905 -130946673 + MLT1A1 LTR MaLR 1 362 -3 38 96 0 0 chr3 96577972 96578087 -130946491 + AT_rich Low_complexity Low_complexity 1 115 0 269 254 70 42 chr3 96578288 96578430 -130946148 + LTR16B LTR ERVL 3 148 -316 200 184 41 0 chr3 96579028 96579077 -130945501 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 181 95 24 24 chr3 96579651 96579693 -130944885 + (CAA)n Simple_repeat Simple_repeat 2 43 0 216 204 0 0 chr3 96579912 96579956 -130944622 + T-rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr3 96580341 96580371 -130944207 + AT_rich Low_complexity Low_complexity 1 30 0 22 88 0 0 chr3 96580821 96580878 -130943700 + AT_rich Low_complexity Low_complexity 1 57 0 307 250 6 44 chr3 96581325 96581505 -130943073 + (CATATA)n Simple_repeat Simple_repeat 6 178 0 217 226 0 38 chr3 96581513 96581566 -130943012 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 241 236 22 34 chr3 96581570 96581659 -130942919 - L1MC4 LINE L1 -1341 6701 6614 2029 150 0 0 chr3 96581946 96582246 -130942332 - AluSx SINE Alu -12 300 1 200 273 73 0 chr3 96583159 96583214 -130941364 + MER5A DNA MER1_type 90 148 -41 4960 164 49 15 chr3 96583222 96584647 -130939931 + L1MA8 LINE L1 4818 6291 0 196 308 50 75 chr3 96584890 96585010 -130939568 + MIR SINE MIR 22 138 -124 2325 87 56 0 chr3 96585132 96585522 -130939056 - L1PA4 LINE L1 0 6155 5744 263 237 11 0 chr3 96585635 96585728 -130938850 + (TATATG)n Simple_repeat Simple_repeat 6 99 0 297 338 61 30 chr3 96585763 96585961 -130938617 - L2 LINE L2 -1340 1974 1771 8864 116 13 2 chr3 96586246 96587514 -130937064 - HSMAR1 DNA Mariner -5 1282 1 1860 165 38 25 chr3 96587608 96588123 -130936455 - Charlie1 DNA MER1_type -127 2634 2079 251 93 23 0 chr3 96588292 96588335 -130936243 + (CA)n Simple_repeat Simple_repeat 1 44 0 834 178 82 58 chr3 96588368 96588587 -130935991 + MER20 DNA MER1_type 2 219 0 225 256 96 72 chr3 96590888 96590961 -130933617 - LTR67 LTR ERVL -2 555 476 297 0 0 0 chr3 96590961 96590994 -130933584 + (CA)n Simple_repeat Simple_repeat 2 34 0 225 256 96 72 chr3 96590994 96591045 -130933533 - LTR67 LTR ERVL -81 476 428 1140 311 86 20 chr3 96591401 96591890 -130932688 + LTR33 LTR ERVL 1 521 0 215 245 19 0 chr3 96592106 96592159 -130932419 + A-rich Low_complexity Low_complexity 1 54 0 440 320 137 21 chr3 96592897 96593131 -130931447 + LTR16C LTR ERVL 1 261 -230 303 307 55 0 chr3 96593185 96593312 -130931266 + LTR16C LTR ERVL 350 483 -8 475 318 29 6 chr3 96593950 96594123 -130930455 + HERVL LTR ERVL 942 1118 -3878 608 191 15 0 chr3 96594390 96594521 -130930057 - L1MA5 LINE L1 -141 6159 6027 380 365 85 25 chr3 96594655 96595008 -130929570 + HERVL LTR ERVL 4249 4622 -1032 710 312 62 29 chr3 96595073 96595413 -130929165 + HERVL LTR ERVL 4776 5126 -638 2491 167 9 19 chr3 96595438 96595870 -130928708 - MSTA LTR MaLR 0 428 1 677 314 35 35 chr3 96596282 96596569 -130928009 + LTR16C LTR ERVL 87 373 -118 6138 58 18 101 chr3 96597709 96599330 -130925248 - L1PA7 LINE L1 0 6154 4636 434 197 17 0 chr3 96599690 96599807 -130924771 + L1MA7 LINE L1 6173 6291 0 216 350 133 33 chr3 96599849 96599969 -130924609 - L2 LINE L2 -19 3253 3122 1365 257 144 10 chr3 96600838 96601437 -130923141 + L1M4 LINE L1 4604 5282 -864 15005 159 14 26 chr3 96601437 96605492 -130919086 + L1PA16 LINE L1 2 4240 -2221 1121 99 12 0 chr3 96605518 96605720 -130918858 + L1P LINE L1 5540 5743 -703 2046 99 7 0 chr3 96605726 96606009 -130918569 + L1P LINE L1 1 285 -5861 3559 169 21 19 chr3 96606150 96607228 -130917350 + L1PA16 LINE L1 5202 6472 -9 382 245 144 75 chr3 96608472 96608660 -130915918 + MLT1G3 LTR MaLR 10 210 -320 * 414 225 16 101 chr3 96608657 96608786 -130915792 + MER45A DNA AcHobo 61 178 0 321 255 159 40 chr3 96608814 96609023 -130915555 + MLT1G3 LTR MaLR 286 547 -8 216 164 48 164 chr3 96609043 96609100 -130915478 - MIR SINE MIR -64 198 157 2143 116 0 10 chr3 96609100 96609402 -130915176 - AluSq SINE Alu -14 299 1 216 164 48 164 chr3 96609402 96609448 -130915130 - MIR SINE MIR -105 157 107 21 0 0 0 chr3 96610521 96610542 -130914036 + AT_rich Low_complexity Low_complexity 1 21 0 785 77 0 0 chr3 96610734 96610838 -130913740 - L1PA8 LINE L1 -2 6170 6067 186 43 0 0 chr3 96611052 96611075 -130913503 + (TGAA)n Simple_repeat Simple_repeat 2 24 0 327 265 94 68 chr3 96611328 96611445 -130913133 + L2 LINE L2 3153 3272 0 1225 252 167 21 chr3 96611702 96612175 -130912403 - MLT1F LTR MaLR 0 542 1 324 313 90 30 chr3 96613264 96613398 -130911180 + MIR SINE MIR 71 212 -50 1879 154 0 7 chr3 96615591 96615883 -130908695 - AluSg SINE Alu -20 290 1 288 0 0 0 chr3 96616083 96616115 -130908463 + (CTA)n Simple_repeat Simple_repeat 3 34 0 2591 136 28 9 chr3 96616225 96616660 -130907918 + L1MA8 LINE L1 5745 6187 -104 517 198 9 0 chr3 96617210 96617316 -130907262 - L1MB4 LINE L1 0 6180 6074 197 295 103 26 chr3 96617361 96617439 -130907139 + L2 LINE L2 3189 3272 0 2306 92 0 13 chr3 96617509 96617823 -130906755 + AluY SINE Alu 2 311 0 192 325 19 102 chr3 96617858 96618015 -130906563 - MER5A DNA MER1_type 0 189 46 2142 123 0 0 chr3 96618030 96618338 -130906240 + AluSx SINE Alu 1 308 -4 19211 39 5 1 chr3 96618339 96621270 -130903308 + L1PA4 LINE L1 3007 5950 -205 36985 42 2 1 chr3 96621386 96627247 -130897331 + L1PA3 LINE L1 291 6155 0 4991 89 6 18 chr3 96627251 96627979 -130896599 + L1PA8A LINE L1 5413 6131 0 1061 205 0 31 chr3 96628131 96628355 -130896223 + AluJo SINE Alu 76 292 -20 2227 248 74 19 chr3 96628372 96629103 -130895475 + L1ME1 LINE L1 5290 6060 -106 629 250 124 28 chr3 96629246 96629847 -130894731 + L1MC4a LINE L1 6548 7368 -440 228 236 179 38 chr3 96629861 96629967 -130894611 + L1MC4 LINE L1 7627 7747 -295 1397 246 75 43 chr3 96629969 96630408 -130894170 + MLT1D LTR MaLR 1 453 -52 286 314 88 46 chr3 96631144 96631427 -130893151 - L2 LINE L2 -832 2482 2188 515 246 142 45 chr3 96631709 96631977 -130892601 + MLT1H LTR MaLR 255 548 -1 26 0 0 0 chr3 96632137 96632163 -130892415 + AT_rich Low_complexity Low_complexity 1 26 0 2109 134 0 3 chr3 96632163 96632470 -130892108 - AluSx SINE Alu -6 306 1 497 157 11 0 chr3 96632492 96632673 -130891905 - L1MA4A LINE L1 -23 6280 6037 189 0 0 0 chr3 96637055 96637076 -130887502 + (T)n Simple_repeat Simple_repeat 1 21 0 4591 127 46 78 chr3 96638241 96638917 -130885661 + L1PA16 LINE L1 5225 5864 -302 2438 48 0 22 chr3 96638917 96639230 -130885348 - AluY SINE Alu -5 306 1 4591 127 46 78 chr3 96639230 96639523 -130885055 + L1PA16 LINE L1 5864 6165 -1 21 36 0 0 chr3 96639581 96639609 -130884969 + AT_rich Low_complexity Low_complexity 1 28 0 418 241 57 67 chr3 96640066 96640315 -130884263 - L1ME LINE L1 -579 5591 5344 1661 261 37 44 chr3 96640315 96640912 -130883666 - MLT1E LTR MaLR 0 593 1 418 241 57 67 chr3 96640912 96640944 -130883634 - L1ME LINE L1 -826 5344 5313 722 290 66 50 chr3 96641196 96641981 -130882597 - L1ME LINE L1 -1312 4834 4037 1403 252 64 29 chr3 96642334 96642790 -130881788 + MLT1F LTR MaLR 58 529 -13 276 320 111 4 chr3 96643649 96643893 -130880685 + L1ME LINE L1 5510 5779 -342 1563 169 7 36 chr3 96645231 96645538 -130879040 - AluJo SINE Alu -14 298 1 1077 219 81 44 chr3 96653197 96653580 -130870998 - MLT2C1 LTR ERVL 0 397 1 1584 126 140 14 chr3 96653752 96654030 -130870548 + AluSq SINE Alu 1 313 0 661 261 161 60 chr3 96655926 96656426 -130868152 - MLT1F LTR MaLR -3 551 1 709 312 91 20 chr3 96656902 96657299 -130867279 - MLT1L LTR MaLR -1 614 190 527 343 11 0 chr3 96660655 96660833 -130863745 - MIR SINE MIR -25 237 58 21 104 0 0 chr3 96660896 96660973 -130863605 + AT_rich Low_complexity Low_complexity 1 77 0 1792 157 4 0 chr3 96661171 96661491 -130863087 - AluSx SINE Alu 0 321 1 21 0 0 0 chr3 96662295 96662316 -130862262 + AT_rich Low_complexity Low_complexity 1 21 0 762 252 62 12 chr3 96662692 96662934 -130861644 + MIR SINE MIR 6 259 -3 425 308 64 34 chr3 96662941 96663175 -130861403 - MARNA DNA Mariner -123 463 223 397 320 32 6 chr3 96663759 96663915 -130860663 - MIR SINE MIR -55 207 48 192 346 76 67 chr3 96664792 96665133 -130859445 + L2 LINE L2 2034 2377 -937 240 346 70 56 chr3 96665722 96665936 -130858642 + L2 LINE L2 2458 2674 -640 533 363 114 28 chr3 96666312 96667075 -130857503 + L2 LINE L2 332 1160 -2154 252 328 16 8 chr3 96667579 96667701 -130856877 + L1ME3A LINE L1 4807 4929 -1217 384 268 164 30 chr3 96667721 96667952 -130856626 + L1ME3A LINE L1 5318 5579 -585 253 308 0 0 chr3 96667964 96668055 -130856523 + L1MC4 LINE L1 6613 6703 -1339 412 145 76 0 chr3 96668056 96668201 -130856377 + (TA)n Simple_repeat Simple_repeat 2 157 0 1640 241 119 31 chr3 96668204 96668723 -130855855 + L1ME3A LINE L1 5603 6167 -3 3762 211 5 35 chr3 96668724 96669664 -130854914 + L1 LINE L1 3985 4896 -1250 26 0 0 0 chr3 96669893 96669919 -130854659 + AT_rich Low_complexity Low_complexity 1 26 0 1334 188 71 113 chr3 96670511 96670989 -130853589 + MLT1C LTR MaLR 1 458 -9 428 259 127 34 chr3 96671294 96671499 -130853079 - MIR SINE MIR -26 236 13 237 236 0 0 chr3 96672386 96672441 -130852137 + (TGAA)n Simple_repeat Simple_repeat 4 58 0 221 246 49 0 chr3 96673018 96673079 -130851499 + L2 LINE L2 3199 3262 -51 455 366 78 54 chr3 96673135 96673462 -130851116 + L2 LINE L2 2373 2691 -581 1365 230 95 12 chr3 96673462 96673893 -130850685 + MLT1C LTR MaLR 1 467 0 455 366 78 54 chr3 96673893 96674409 -130850169 + L2 LINE L2 2691 3235 -37 25 31 0 0 chr3 96675808 96675840 -130848738 + AT_rich Low_complexity Low_complexity 1 32 0 2101 98 20 30 chr3 96676151 96676456 -130848122 + AluSq SINE Alu 1 302 -11 336 107 0 0 chr3 96676904 96676960 -130847618 + L1MA7 LINE L1 6230 6285 -6 297 310 75 0 chr3 96677533 96677669 -130846909 - MER5A DNA MER1_type -3 186 29 276 359 34 8 chr3 96677818 96677935 -130846643 + L3b LINE CR1 1216 1335 -248 300 133 0 0 chr3 96678312 96678372 -130846206 + (TG)n Simple_repeat Simple_repeat 1 60 0 187 300 0 20 chr3 96679707 96679757 -130844821 - L2 LINE L2 -8 3264 3216 231 61 0 0 chr3 96679859 96679892 -130844686 + (TC)n Simple_repeat Simple_repeat 2 34 0 410 145 0 48 chr3 96681395 96681519 -130843059 + (TCTA)n Simple_repeat Simple_repeat 4 121 0 21 57 0 0 chr3 96682443 96682478 -130842100 + AT_rich Low_complexity Low_complexity 1 35 0 3052 56 5 2 chr3 96682600 96682996 -130841582 - L1PA7 LINE L1 -4 6150 5754 414 285 0 25 chr3 96682997 96683155 -130841423 - MER20B DNA MER1_type -386 397 244 1343 191 99 7 chr3 96683160 96683433 -130841145 - AluJb SINE Alu -6 306 9 294 351 67 0 chr3 96683459 96683624 -130840954 - MER20B DNA MER1_type -566 217 42 27 92 0 0 chr3 96684223 96684299 -130840279 + AT_rich Low_complexity Low_complexity 1 76 0 200 222 0 0 chr3 96685431 96685476 -130839102 + (TA)n Simple_repeat Simple_repeat 2 46 0 21 57 0 0 chr3 96685602 96685637 -130838941 + AT_rich Low_complexity Low_complexity 1 35 0 2362 85 0 0 chr3 96686571 96686878 -130837700 + AluSx SINE Alu 1 307 -5 21 0 0 0 chr3 96686939 96686960 -130837618 + AT_rich Low_complexity Low_complexity 1 21 0 436 300 65 46 chr3 96687006 96687266 -130837312 - L1 LINE L1 -783 5363 5099 612 241 124 5 chr3 96687452 96687656 -130836922 + MIR SINE MIR 34 261 -1 507 228 32 48 chr3 96737803 96737962 -130786616 - L1MC4 LINE L1 -293 7702 7456 326 261 23 0 chr3 96738158 96738246 -130786332 - L1MC4 LINE L1 -327 7715 7626 860 260 87 22 chr3 96738310 96738712 -130785866 + L1MC4 LINE L1 7000 7450 -383 253 333 0 29 chr3 96738717 96738819 -130785759 - L2 LINE L2 -44 3269 3171 396 211 42 0 chr3 96738999 96739094 -130785484 + L1MC4 LINE L1 7509 7607 -435 252 296 28 0 chr3 96739849 96739920 -130784658 + MER20B DNA MER1_type 13 85 -698 611 298 52 52 chr3 96739993 96740185 -130784393 + MER20B DNA MER1_type 372 566 -217 918 235 18 5 chr3 96740185 96740406 -130784172 + MER58A DNA MER1_type 1 224 0 611 298 52 52 chr3 96740406 96740595 -130783983 + MER20B DNA MER1_type 565 753 -30 300 200 0 0 chr3 96740649 96740709 -130783869 - L1 LINE L1 -943 5203 5144 * 754 231 39 0 chr3 96740708 96740916 -130783662 - L1M4c LINE L1 -2566 3404 3189 * 1858 255 23 69 chr3 96740898 96741468 -130783110 - L1M4c LINE L1 -3110 2860 2332 276 30 0 0 chr3 96741468 96741501 -130783077 + (CA)n Simple_repeat Simple_repeat 2 34 0 1858 255 23 69 chr3 96741501 96741698 -130782880 - L1M4c LINE L1 -3638 2332 2128 * 5358 119 7 20 chr3 96741696 96742519 -130782059 - L1PA13 LINE L1 0 6163 5350 2039 142 73 14 chr3 96742519 96742863 -130781715 - THE1B LTR MaLR 0 364 1 5358 119 7 20 chr3 96742863 96742882 -130781696 - L1PA13 LINE L1 -813 5350 5332 5204 183 12 18 chr3 96742881 96743955 -130780623 + L1PA13 LINE L1 4270 5337 -809 * 603 142 26 42 chr3 96743953 96744031 -130780547 - L1M4c LINE L1 -3831 2139 2061 * 2104 141 0 6 chr3 96744031 96744343 -130780235 - AluSq SINE Alu -3 310 1 603 142 26 42 chr3 96744343 96744463 -130780115 - L1M4c LINE L1 -3909 2061 1951 2007 241 43 58 chr3 96744472 96745111 -130779467 - L1M4c LINE L1 -4519 1382 830 1687 210 34 8 chr3 96745111 96745464 -130779114 + MLT1A1 LTR MaLR 4 365 0 2007 241 43 58 chr3 96745464 96745852 -130778726 - L1M4c LINE L1 -5071 830 437 528 328 65 44 chr3 96746235 96746622 -130777956 - L1M4c LINE L1 -5496 395 1 1191 290 81 69 chr3 96746833 96747612 -130776966 + L2 LINE L2 2343 3132 -181 2006 110 50 0 chr3 96747883 96748164 -130776414 + AluSg SINE Alu 1 295 -15 1583 103 85 9 chr3 96748622 96748948 -130775630 - LTR7 LTR ERV1 -10 440 1 23 33 0 0 chr3 96751415 96751445 -130773133 + AT_rich Low_complexity Low_complexity 1 30 0 241 205 13 39 chr3 96752285 96752363 -130772215 + A-rich Low_complexity Low_complexity 3 78 0 212 40 0 80 chr3 96752370 96752420 -130772158 + (CAAAAA)n Simple_repeat Simple_repeat 2 47 0 212 300 44 22 chr3 96752563 96752588 -130771990 - L2 LINE L2 -932 2382 2359 204 40 0 0 chr3 96752588 96752613 -130771965 + (TTG)n Simple_repeat Simple_repeat 2 26 0 212 300 44 22 chr3 96752613 96752677 -130771901 - L2 LINE L2 -955 2359 2291 210 37 0 0 chr3 96753415 96753442 -130771136 + (CA)n Simple_repeat Simple_repeat 2 28 0 182 238 0 0 chr3 96753516 96753558 -130771020 + MIR SINE MIR 74 115 -147 627 306 69 39 chr3 96753684 96754317 -130770261 - L2 LINE L2 0 3313 2617 457 260 104 73 chr3 96754407 96754695 -130769883 + L1ME LINE L1 4751 5047 -1099 317 303 0 11 chr3 96754710 96754799 -130769779 + LTR40a LTR ERVL 18 105 -414 2079 141 0 3 chr3 96754802 96755115 -130769463 + AluSx SINE Alu 1 312 0 207 0 64 85 chr3 96755219 96755266 -130769312 + (TTTTA)n Simple_repeat Simple_repeat 3 48 0 1302 274 45 13 chr3 96755281 96755750 -130768828 + LTR40a LTR ERVL 95 517 -2 350 85 17 0 chr3 96755783 96755842 -130768736 + (TAAA)n Simple_repeat Simple_repeat 2 61 0 1218 252 96 27 chr3 96755869 96756517 -130768061 + L1ME LINE L1 5111 5803 -361 210 310 28 0 chr3 96756635 96756706 -130767872 + MIR SINE MIR 92 164 -98 26 101 0 0 chr3 96757303 96757392 -130767186 + AT_rich Low_complexity Low_complexity 1 89 0 22 0 0 0 chr3 96757642 96757664 -130766914 + AT_rich Low_complexity Low_complexity 1 22 0 668 321 92 40 chr3 96758794 96759270 -130765308 - L3 LINE CR1 -349 1228 728 1814 126 0 0 chr3 96759822 96760083 -130764495 - AluSx SINE Alu -11 301 41 222 128 0 0 chr3 96760377 96760416 -130764162 + (TTTTC)n Simple_repeat Simple_repeat 3 41 0 324 279 18 36 chr3 96762256 96762367 -130762211 - L2 LINE L2 -5 3308 3200 287 308 0 44 chr3 96762981 96763072 -130761506 + L2 LINE L2 3227 3313 0 192 40 0 0 chr3 96764066 96764091 -130760487 + (CA)n Simple_repeat Simple_repeat 2 26 0 357 117 0 0 chr3 96764625 96764685 -130759893 + (GA)n Simple_repeat Simple_repeat 1 60 0 1377 203 37 37 chr3 96765276 96765571 -130759007 + AluJo SINE Alu 3 297 -15 237 33 0 0 chr3 96765717 96765747 -130758831 + (TG)n Simple_repeat Simple_repeat 2 31 0 954 161 36 31 chr3 96767437 96767629 -130756949 - MER3 DNA MER1_type -2 207 15 37 39 0 0 chr3 96767657 96767708 -130756870 + AT_rich Low_complexity Low_complexity 1 51 0 200 130 37 0 chr3 96768482 96768536 -130756042 + T-rich Low_complexity Low_complexity 2 57 0 328 172 0 0 chr3 96770115 96770173 -130754405 + LTR40a LTR ERVL 450 507 -12 1688 163 29 0 chr3 96770226 96770503 -130754075 - AluSx SINE Alu -25 287 3 262 279 29 48 chr3 96771449 96771553 -130753025 + MIR3 SINE MIR 55 156 -52 2609 113 3 5 chr3 96771809 96772180 -130752398 + THE1C LTR MaLR 1 370 -5 23 0 0 0 chr3 96772791 96772814 -130751764 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr3 96773658 96773688 -130750890 + AT_rich Low_complexity Low_complexity 1 30 0 1748 165 52 22 chr3 96773855 96774219 -130750359 - THE1C LTR MaLR 0 375 1 192 97 0 0 chr3 96774229 96774260 -130750318 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 24190 32 1 0 chr3 96774262 96777957 -130746621 - L1PA4 LINE L1 -8 6147 2449 2143 153 42 16 chr3 96778216 96778602 -130745976 + MSTD LTR MaLR 1 396 0 214 114 0 45 chr3 96779466 96779510 -130745068 + (GA)n Simple_repeat Simple_repeat 1 42 0 259 358 8 8 chr3 96779818 96779952 -130744626 - L1ME LINE L1 -425 5696 5563 2058 120 0 7 chr3 96781215 96781532 -130743046 + AluSg SINE Alu 1 315 0 24 32 0 0 chr3 96782160 96782191 -130742387 + AT_rich Low_complexity Low_complexity 1 31 0 1424 214 0 36 chr3 96782404 96782835 -130741743 + AluJo SINE Alu 12 431 0 260 100 0 20 chr3 96782868 96782918 -130741660 + (CAGGG)n Simple_repeat Simple_repeat 2 50 0 790 182 0 7 chr3 96783517 96783671 -130740907 - L1MA3 LINE L1 -1 6304 6152 4261 177 31 28 chr3 96783953 96784870 -130739708 + L1MB3 LINE L1 5263 6175 -8 2488 51 0 0 chr3 96785617 96785911 -130738667 - AluY SINE Alu -17 294 1 2139 104 7 0 chr3 96787646 96787944 -130736634 - AluSx SINE Alu -12 300 1 2533 53 0 0 chr3 96788384 96788688 -130735890 - AluY SINE Alu -7 304 1 264 123 0 0 chr3 96790191 96790248 -130734330 + LTR66 LTR ERVL 394 450 -160 1503 179 28 41 chr3 96791407 96791725 -130732853 - MER2 DNA MER2_type -28 317 4 51 70 0 0 chr3 96792083 96792183 -130732395 + AT_rich Low_complexity Low_complexity 1 100 0 391 173 72 0 chr3 96792218 96792357 -130732221 + (TA)n Simple_repeat Simple_repeat 1 149 0 242 190 41 58 chr3 96792385 96792506 -130732072 + (CATATA)n Simple_repeat Simple_repeat 1 119 0 187 111 22 22 chr3 96792515 96792560 -130732018 + (CATA)n Simple_repeat Simple_repeat 1 45 0 25 0 0 0 chr3 96792560 96792585 -130731993 + AT_rich Low_complexity Low_complexity 1 25 0 25 75 0 0 chr3 96792658 96792711 -130731867 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr3 96793455 96793477 -130731101 + AT_rich Low_complexity Low_complexity 1 22 0 361 290 184 39 chr3 96795117 96795539 -130729039 + L2 LINE L2 2527 3047 -266 411 38 0 0 chr3 96795584 96795637 -130728941 + (CA)n Simple_repeat Simple_repeat 2 54 0 316 308 17 47 chr3 96795843 96796015 -130728563 + MIR SINE MIR 95 261 -1 987 262 72 49 chr3 96796092 96796155 -130728423 - LTR16A1 LTR ERVL -1 456 396 2455 67 0 0 chr3 96796155 96796452 -130728126 + AluY SINE Alu 6 302 -9 987 262 72 49 chr3 96796452 96796834 -130727744 - LTR16A1 LTR ERVL -61 396 1 2493 153 24 2 chr3 96797822 96798247 -130726331 + MER57B LTR ERV1 1 434 0 4191 149 21 22 chr3 96798247 96798920 -130725658 + MER57B-int LTR ERV1 1 672 -6865 * 4705 151 36 44 chr3 96798917 96799618 -130724960 + MER57-int LTR ERV1 288 993 -6823 276 53 0 0 chr3 96799618 96799656 -130724922 + (TG)n Simple_repeat Simple_repeat 1 38 0 4705 151 36 44 chr3 96799656 96799910 -130724668 + MER57-int LTR ERV1 993 1247 -6569 183 114 0 0 chr3 96799910 96799945 -130724633 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 4705 151 36 44 chr3 96799945 96800633 -130723945 + MER57-int LTR ERV1 1247 4143 -3673 1299 146 8 8 chr3 96800631 96800870 -130723708 + MER57-int LTR ERV1 3914 4152 -3385 * 1156 8 0 0 chr3 96800870 96801002 -130723576 + AluYb8 SINE Alu 186 317 -1 1665 107 19 4 chr3 96801017 96801287 -130723291 + MER57-int LTR ERV1 4141 4414 -3123 10215 101 3 3 chr3 96801288 96802749 -130721829 + L1P LINE L1 11 1471 -4675 234 0 0 0 chr3 96803173 96803199 -130721379 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 775 276 105 20 chr3 96803936 96804416 -130720162 - MLT1E LTR MaLR 0 593 4 298 208 0 78 chr3 96805072 96805149 -130719429 - L3 LINE CR1 -891 686 616 250 164 131 0 chr3 96806335 96806396 -130718182 - L1MA9 LINE L1 -2873 3273 3205 * 7551 192 53 22 chr3 96806387 96807119 -130717459 + L1MA9 LINE L1 3272 3979 -2333 2717 7 0 0 chr3 96807119 96807416 -130717162 - AluYa5 SINE Alu -14 297 1 7551 192 53 22 chr3 96807416 96809112 -130715466 + L1MA9 LINE L1 3979 5774 -538 620 195 0 0 chr3 96809115 96809238 -130715340 + L1MA9 LINE L1 6190 6312 0 747 285 87 60 chr3 96809854 96810350 -130714228 + L1ME3A LINE L1 5463 5981 -181 2292 77 3 3 chr3 96810350 96810647 -130713931 + AluSq SINE Alu 1 297 -16 747 285 87 60 chr3 96810647 96810785 -130713793 + L1ME3A LINE L1 5981 6114 -48 271 297 20 20 chr3 96810997 96811098 -130713480 - L1M4 LINE L1 -2022 4124 4024 235 242 0 0 chr3 96811137 96811203 -130713375 - L1M4 LINE L1 -2362 3784 3719 6639 176 30 32 chr3 96811329 96812567 -130712011 - L1MA7 LINE L1 0 6495 5326 1761 142 3 30 chr3 96812567 96812869 -130711709 - AluSg SINE Alu -16 294 1 6639 176 30 32 chr3 96812869 96814042 -130710536 - L1MA7 LINE L1 -1169 5326 4152 664 227 19 2 chr3 96814093 96814267 -130710311 + L1M1 LINE L1 2753 3253 -4313 3003 257 26 38 chr3 96814280 96815317 -130709261 - L1MA7 LINE L1 -4520 1761 823 2347 274 10 75 chr3 96815430 96816238 -130708340 - L1MA7 LINE L1 -5518 763 9 502 315 96 68 chr3 96816266 96816875 -130707703 - L1M4 LINE L1 -2479 3667 3029 560 275 8 0 chr3 96816875 96817006 -130707572 - FLAM_A SINE Alu -1 132 1 502 315 96 68 chr3 96817006 96817189 -130707389 - L1M4 LINE L1 -3117 3029 2853 324 384 87 6 chr3 96817434 96817606 -130706972 + L2 LINE L2 3087 3272 0 181 260 40 0 chr3 96817814 96817864 -130706714 + L2 LINE L2 3262 3313 0 3793 166 25 3 chr3 96819222 96819889 -130704689 - HSMAR2 DNA Mariner -1 1301 620 471 116 0 0 chr3 96819890 96819959 -130704619 - HSMAR2 DNA Mariner -645 657 589 2796 50 1 2 chr3 96819959 96820281 -130704297 - L1PA3 LINE L1 -1821 4325 4006 8811 28 5 0 chr3 96820281 96822095 -130702483 + L1PA3 LINE L1 4338 6155 0 2796 50 1 2 chr3 96822095 96822135 -130702443 - L1P LINE L1 -2140 4006 3967 3249 151 31 0 chr3 96822143 96822693 -130701885 - HSMAR2 DNA Mariner -716 586 20 25 0 0 0 chr3 96822737 96822762 -130701816 + AT_rich Low_complexity Low_complexity 1 25 0 222 168 66 0 chr3 96823028 96823165 -130701413 + (TATAA)n Simple_repeat Simple_repeat 1 146 0 362 187 50 66 chr3 96823174 96823356 -130701222 + (CATAA)n Simple_repeat Simple_repeat 2 180 0 21 57 0 0 chr3 96823362 96823397 -130701181 + AT_rich Low_complexity Low_complexity 1 35 0 302 169 52 6 chr3 96823397 96823569 -130701009 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 49 32 0 0 chr3 96823569 96823632 -130700946 + AT_rich Low_complexity Low_complexity 1 63 0 1209 234 195 6 chr3 96824032 96824570 -130700008 - L1 LINE L1 -1417 4729 4089 307 379 23 12 chr3 96824975 96825284 -130699294 - L3 LINE CR1 -115 1462 1079 22 0 0 0 chr3 96825553 96825575 -130699003 + AT_rich Low_complexity Low_complexity 1 22 0 199 299 94 17 chr3 96825615 96825732 -130698846 - L2 LINE L2 0 3313 3188 1805 93 115 4 chr3 96825940 96826219 -130698359 + AluSx SINE Alu 1 310 -2 269 264 37 104 chr3 96827759 96827922 -130696656 - MIR SINE MIR -11 251 100 617 370 90 57 chr3 96828753 96829676 -130694902 - L2 LINE L2 0 3272 2314 1543 163 67 59 chr3 96829676 96830063 -130694515 - MLT1B LTR MaLR 0 390 1 617 370 90 57 chr3 96830063 96830116 -130694462 - L2 LINE L2 -958 2314 2264 4702 35 3 0 chr3 96830356 96830928 -130693650 + L1P LINE L1 1493 2066 -4080 22 88 0 0 chr3 96831480 96831537 -130693041 + AT_rich Low_complexity Low_complexity 1 57 0 195 42 0 0 chr3 96832211 96832235 -130692343 + (TG)n Simple_repeat Simple_repeat 1 24 0 1118 162 62 130 chr3 96832250 96832589 -130691989 + MER7A DNA MER2_type 1 314 -32 1553 206 58 53 chr3 96833603 96833844 -130690734 - MLT1A1 LTR MaLR -4 361 116 645 242 0 0 chr3 96833844 96833976 -130690602 + FLAM_C SINE Alu 1 132 -1 1553 206 58 53 chr3 96833976 96834093 -130690485 - MLT1A1 LTR MaLR -249 116 1 294 225 106 56 chr3 96834096 96834238 -130690340 + MIR SINE MIR 78 226 -36 274 374 8 8 chr3 96836076 96836199 -130688379 + L2 LINE L2 2935 3057 -215 24 32 0 0 chr3 96837005 96837036 -130687542 + AT_rich Low_complexity Low_complexity 1 31 0 411 294 119 45 chr3 96839083 96839461 -130685117 + L1MC/D LINE L1 5322 5727 -2081 29 78 0 0 chr3 96839780 96839844 -130684734 + AT_rich Low_complexity Low_complexity 1 64 0 22 80 0 0 chr3 96840533 96840583 -130683995 + AT_rich Low_complexity Low_complexity 1 50 0 22 0 0 0 chr3 96840598 96840620 -130683958 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 96840727 96840748 -130683830 + AT_rich Low_complexity Low_complexity 1 21 0 5203 92 6 0 chr3 96840854 96841843 -130682735 - L1PB2 LINE L1 0 6151 5227 5174 227 31 6 chr3 96841843 96843047 -130681531 + L1 LINE L1 1903 3144 -3002 207 0 0 0 chr3 96843047 96843070 -130681508 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 5174 227 31 6 chr3 96843070 96843313 -130681265 + L1 LINE L1 3144 3379 -2767 257 271 17 0 chr3 96843868 96843927 -130680651 - MLT1K LTR MaLR -341 247 188 306 242 154 34 chr3 96846284 96846433 -130678145 - HAL1 LINE L1 -1186 1321 1155 934 219 69 13 chr3 96847609 96847842 -130676736 - MLT1D LTR MaLR -258 247 2 28 29 0 0 chr3 96849510 96849545 -130675033 + AT_rich Low_complexity Low_complexity 1 35 0 1740 149 166 3 chr3 96849641 96850009 -130674569 - MSTA LTR MaLR 0 428 1 364 237 34 0 chr3 96850019 96850137 -130674441 + GA-rich Low_complexity Low_complexity 3 124 0 25 65 0 0 chr3 96850142 96850188 -130674390 + GC_rich Low_complexity Low_complexity 1 46 0 368 304 0 43 chr3 96850440 96850624 -130673954 + G-rich Low_complexity Low_complexity 1 176 0 660 119 32 8 chr3 96850891 96851017 -130673561 + GA-rich Low_complexity Low_complexity 3 131 0 1129 186 77 106 chr3 96851246 96851622 -130672956 - MLT1A1 LTR MaLR 0 365 1 246 301 140 7 chr3 96851849 96851985 -130672593 - LTR33A LTR ERVL -261 262 109 1696 168 181 25 chr3 96853065 96853469 -130671109 - MLT1C LTR MaLR 0 467 1 267 284 34 34 chr3 96855593 96855681 -130668897 + L2 LINE L2 3182 3269 -3 255 312 101 0 chr3 96856621 96856730 -130667848 - MIR3 SINE MIR -13 195 76 445 317 24 18 chr3 96857131 96857298 -130667280 - MLT1I LTR MaLR -177 232 65 443 181 35 7 chr3 96857606 96857750 -130666828 + GA-rich Low_complexity Low_complexity 1 148 0 378 264 23 0 chr3 96857770 96857857 -130666721 + MER81 DNA DNA 22 110 -4 1516 258 23 48 chr3 96857924 96858408 -130666170 - LTR40a LTR ERVL -47 472 1 508 226 11 19 chr3 96859072 96859248 -130665330 + MER20 DNA MER1_type 1 218 -1 2446 137 43 2 chr3 96859340 96859757 -130664821 - MER57B LTR ERV1 0 434 1 12475 131 74 62 chr3 96859757 96862606 -130661972 - MER57B-int LTR ERV1 0 7537 4896 41316 45 25 2 chr3 96862610 96868625 -130655953 - L1PA5 LINE L1 -1 6153 1 547 72 0 0 chr3 96868705 96868788 -130655790 - Alu SINE Alu -1 308 226 27273 34 14 2 chr3 96868788 96869223 -130655355 + L1PA2 LINE L1 1931 2359 -3811 240 35 0 0 chr3 96869223 96869252 -130655326 + (CA)n Simple_repeat Simple_repeat 1 29 0 27273 34 14 2 chr3 96869252 96873009 -130651569 + L1PA2 LINE L1 2359 6170 0 949 253 109 0 chr3 96873755 96873976 -130650602 - Tigger7 DNA MER2_type -2241 246 2 232 232 43 0 chr3 96873976 96874045 -130650533 - MIR SINE MIR -57 205 134 1991 187 0 0 chr3 96875631 96875978 -130648600 + MER7A DNA MER2_type 2 346 0 21 36 0 0 chr3 96875991 96876019 -130648559 + AT_rich Low_complexity Low_complexity 1 28 0 26 82 0 0 chr3 96876873 96876934 -130647644 + AT_rich Low_complexity Low_complexity 1 61 0 4255 250 52 24 chr3 96878544 96880804 -130643774 - L1PA15-16 LINE L1 -2882 3915 1612 354 354 14 0 chr3 96881733 96881880 -130642698 - L1PA15-16 LINE L1 -5276 1511 1363 * 757 342 40 53 chr3 96881878 96882495 -130642083 - L1PA15-16 LINE L1 -6177 610 2 761 315 181 6 chr3 96883140 96883499 -130641079 + L2 LINE L2 2881 3302 -11 21 36 0 0 chr3 96883540 96883568 -130641010 + AT_rich Low_complexity Low_complexity 1 28 0 419 285 115 6 chr3 96884935 96885100 -130639478 + MIR SINE MIR 74 256 -6 944 303 59 56 chr3 96885457 96885883 -130638695 + MLT1H LTR MaLR 2 428 -121 1752 171 0 3 chr3 96886053 96886346 -130638232 + AluJb SINE Alu 7 298 -14 24 0 0 0 chr3 96886351 96886375 -130638203 + AT_rich Low_complexity Low_complexity 1 24 0 225 152 43 0 chr3 96887282 96887328 -130637250 + MER4E LTR ERV1 485 532 -234 1261 132 14 29 chr3 96887334 96887573 -130637005 + MER4E LTR ERV1 503 732 -34 1298 53 6 0 chr3 96889577 96889748 -130634830 - L1P LINE L1 -925 5221 5050 209 220 0 20 chr3 96890044 96890094 -130634484 + GA-rich Low_complexity Low_complexity 1 49 0 520 291 62 2 chr3 96890190 96890405 -130634173 + MLT2B1 LTR ERVL 1 224 -190 8892 225 12 9 chr3 96890419 96891456 -130633122 - L1 LINE L1 -1056 5090 4057 4808 112 16 60 chr3 96891456 96892271 -130632307 - MER4E LTR ERV1 0 779 1 8892 225 12 9 chr3 96892271 96893415 -130631163 - L1 LINE L1 -2089 4057 2903 5397 149 4 16 chr3 96893418 96893818 -130630760 + L1PA16 LINE L1 5120 5523 -643 3330 126 8 6 chr3 96893818 96894328 -130630250 - MER9 LTR ERVK 0 511 1 5397 149 4 16 chr3 96894328 96894649 -130629929 + L1PA16 LINE L1 5523 5827 -339 1691 194 123 0 chr3 96894649 96895030 -130629548 + MSTA LTR MaLR 1 428 0 5397 149 4 16 chr3 96895030 96895349 -130629229 + L1PA16 LINE L1 5827 6148 -18 342 343 41 21 chr3 96895404 96895646 -130628932 - L2 LINE L2 -1073 2241 1995 1796 167 0 0 chr3 96895830 96896117 -130628461 - AluSx SINE Alu -16 296 10 225 119 0 0 chr3 96896885 96896927 -130627651 + (T)n Simple_repeat Simple_repeat 1 42 0 628 241 46 35 chr3 96896929 96897103 -130627475 + MLT2B1 LTR ERVL 289 464 -56 228 182 0 0 chr3 96897127 96897171 -130627407 + (CA)n Simple_repeat Simple_repeat 2 45 0 277 128 21 0 chr3 96897171 96897218 -130627360 + MLT2B1 LTR ERVL 417 464 0 292 290 68 4 chr3 96997628 96997722 -130526856 - MIR SINE MIR -63 145 61 1728 158 39 85 chr3 96997911 96998069 -130526509 + MSTB LTR MaLR 3 167 -259 1215 90 0 0 chr3 96998069 96998236 -130526342 + L1MA1 LINE L1 6131 6297 -5 1728 158 39 85 chr3 96998236 96998489 -130526089 + MSTB LTR MaLR 167 395 -31 21 57 0 0 chr3 96999615 96999650 -130524928 + AT_rich Low_complexity Low_complexity 1 35 0 202 291 18 0 chr3 97000326 97000381 -130524197 + L2 LINE L2 3228 3283 -30 397 291 114 6 chr3 97000406 97000581 -130523997 - LTR16C LTR ERVL -32 459 266 648 189 33 0 chr3 97000996 97001118 -130523460 + FLAM_C SINE Alu 5 130 -3 2071 151 38 26 chr3 97001241 97001664 -130522914 - MSTA LTR MaLR 0 428 1 249 226 20 147 chr3 97002128 97002230 -130522348 + MLT1E1 LTR MaLR 7 95 -559 * 1451 230 24 96 chr3 97002214 97002679 -130521899 + MLT1E1 LTR MaLR 221 465 -2 252 215 13 38 chr3 97002816 97002895 -130521683 - L1MB4 LINE L1 -32 6148 6072 * 3630 189 50 12 chr3 97002885 97004249 -130520329 - L1MA4 LINE L1 -283 6017 4602 238 361 35 28 chr3 97004761 97004905 -130519673 + L3 LINE CR1 949 1093 -484 35 0 0 0 chr3 97005721 97005756 -130518822 + AT_rich Low_complexity Low_complexity 1 35 0 1653 155 30 30 chr3 97006739 97007043 -130517535 - AluSx SINE Alu -8 304 1 294 327 47 97 chr3 97008279 97008686 -130515892 + L2 LINE L2 2626 3012 -260 783 297 60 34 chr3 97008689 97009069 -130515509 + MLT1B LTR MaLR 1 390 0 267 93 0 0 chr3 97009830 97009873 -130514705 + (CA)n Simple_repeat Simple_repeat 1 43 0 261 0 0 0 chr3 97010714 97010743 -130513835 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 1150 219 39 29 chr3 97010751 97011030 -130513548 - AluJo SINE Alu -30 282 1 722 240 0 0 chr3 97011090 97011265 -130513313 + L1P LINE L1 4276 4450 -1696 1038 199 17 50 chr3 97011277 97011518 -130513060 + MSTD LTR MaLR 164 396 0 1114 277 93 29 chr3 97011709 97011966 -130512612 + L1MC4 LINE L1 6443 6682 -1360 276 30 0 0 chr3 97011966 97011999 -130512579 + (CA)n Simple_repeat Simple_repeat 2 34 0 1114 277 93 29 chr3 97011999 97012822 -130511756 + L1MC4 LINE L1 6682 7746 -296 1145 323 78 20 chr3 97012835 97013386 -130511192 + MLT1E LTR MaLR 11 593 0 463 221 73 22 chr3 97013493 97013629 -130510949 + L1MC4 LINE L1 7757 7899 -143 27 49 0 0 chr3 97014450 97014491 -130510087 + AT_rich Low_complexity Low_complexity 1 41 0 214 229 49 33 chr3 97016712 97016773 -130507805 - MIR SINE MIR 0 262 201 2049 203 21 14 chr3 97017013 97017436 -130507142 + MSTB LTR MaLR 1 426 0 21 0 0 0 chr3 97017789 97017810 -130506768 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 97018400 97018429 -130506149 + AT_rich Low_complexity Low_complexity 1 29 0 591 296 6 28 chr3 97019020 97019196 -130505382 - L2 LINE L2 -5 3308 3137 444 361 88 25 chr3 97019462 97019736 -130504842 - L2 LINE L2 -337 2977 2687 277 310 17 9 chr3 97019736 97019852 -130504726 + L1MA10 LINE L1 6216 6332 -2 782 317 172 10 chr3 97019855 97020262 -130504316 - L2 LINE L2 -623 2691 2219 532 70 23 0 chr3 97020262 97020348 -130504230 + (TCTA)n Simple_repeat Simple_repeat 4 91 0 346 360 42 21 chr3 97020373 97020562 -130504016 - L2 LINE L2 -1095 2219 2027 1394 92 0 11 chr3 97020625 97020861 -130503717 + AluSq SINE Alu 103 336 0 1929 313 80 7 chr3 97020911 97021650 -130502928 - L2 LINE L2 -1457 1857 1065 21 0 0 0 chr3 97021805 97021826 -130502752 + AT_rich Low_complexity Low_complexity 1 21 0 42 89 0 0 chr3 97022224 97022336 -130502242 + AT_rich Low_complexity Low_complexity 1 112 0 329 302 143 0 chr3 97022443 97022569 -130502009 - MIR SINE MIR -37 225 82 24 0 0 0 chr3 97022803 97022827 -130501751 + AT_rich Low_complexity Low_complexity 1 24 0 357 342 9 0 chr3 97023584 97023695 -130500883 + L2 LINE L2 2568 2679 -635 446 340 63 78 chr3 97023776 97024235 -130500343 + L2 LINE L2 2853 3304 -9 280 297 198 28 chr3 97025615 97025797 -130498781 - L2 LINE L2 -20 3293 3081 906 58 0 8 chr3 97025803 97025923 -130498655 - AluY SINE Alu -4 307 189 520 329 21 48 chr3 97025923 97026279 -130498299 - L2 LINE L2 -229 3084 2737 21 57 0 0 chr3 97027665 97027700 -130496878 + AT_rich Low_complexity Low_complexity 1 35 0 473 356 86 10 chr3 97028124 97028427 -130496151 + L2 LINE L2 2196 2521 -793 311 205 115 0 chr3 97028438 97028516 -130496062 - Tigger5 DNA MER2_type 0 2323 2237 327 357 7 45 chr3 97028602 97028756 -130495822 + L2 LINE L2 2556 2703 -611 404 208 59 0 chr3 97028761 97028772 -130495806 - L1MA10 LINE L1 -40 6294 6284 505 290 55 34 chr3 97028772 97029065 -130495513 - L1ME1 LINE L1 -44 6122 5824 1403 208 208 35 chr3 97029216 97029644 -130494934 - MLT1D LTR MaLR -3 502 1 247 394 19 0 chr3 97029644 97029739 -130494839 + LTR67 LTR ERVL 76 172 -385 201 182 0 0 chr3 97030014 97030047 -130494531 + T-rich Low_complexity Low_complexity 1 33 0 297 310 11 0 chr3 97030503 97030590 -130493988 + HERVL LTR ERVL 514 601 -5053 189 0 0 0 chr3 97031029 97031050 -130493528 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1762 176 166 0 chr3 97031130 97031540 -130493038 + LTR54B LTR ERV1 1 478 -20 29 0 0 0 chr3 97032152 97032181 -130492397 + AT_rich Low_complexity Low_complexity 1 29 0 229 358 37 0 chr3 97033471 97033552 -130491026 - MER5B DNA MER1_type -69 109 26 34 65 0 0 chr3 97035956 97036018 -130488560 + AT_rich Low_complexity Low_complexity 1 62 0 285 165 39 39 chr3 97037679 97037782 -130486796 + (TCTA)n Simple_repeat Simple_repeat 4 106 0 186 167 0 0 chr3 97037877 97037913 -130486665 + GA-rich Low_complexity Low_complexity 3 38 0 612 237 75 48 chr3 97038179 97038411 -130486167 + LTR40b LTR ERVL 271 461 -1 1928 161 0 3 chr3 97040622 97040926 -130483652 - AluSx SINE Alu -9 303 1 278 196 0 0 chr3 97042210 97042256 -130482322 + L2 LINE L2 3265 3310 -3 25 0 0 0 chr3 97042445 97042470 -130482108 + AT_rich Low_complexity Low_complexity 1 25 0 185 227 0 67 chr3 97042629 97042704 -130481874 - MIR SINE MIR -64 198 129 270 0 0 0 chr3 97043430 97043460 -130481118 + (TG)n Simple_repeat Simple_repeat 2 31 0 2109 246 59 109 chr3 97044557 97045697 -130478881 + MER52A LTR ERV1 673 1755 0 2065 143 3 0 chr3 97045911 97046205 -130478373 + AluSq SINE Alu 1 295 -18 220 371 0 0 chr3 97046384 97046454 -130478124 - L2 LINE L2 -79 3193 3124 528 317 150 55 chr3 97046542 97047107 -130477471 + L3 LINE CR1 922 1540 -37 219 88 0 0 chr3 97047121 97047155 -130477423 + (CA)n Simple_repeat Simple_repeat 1 34 0 1717 52 0 0 chr3 97047733 97047945 -130476633 - L1PA5 LINE L1 -5 6149 5938 598 63 13 0 chr3 97048419 97048498 -130476080 - MADE1 DNA Mariner 0 80 1 325 326 83 76 chr3 97048728 97048772 -130475806 - MLT1I LTR MaLR -39 370 328 2038 130 13 7 chr3 97048772 97049071 -130475507 + AluSc SINE Alu 1 301 -8 325 326 83 76 chr3 97049071 97049327 -130475251 - MLT1I LTR MaLR -81 328 68 460 332 42 45 chr3 97050694 97051004 -130473574 + MLT1H LTR MaLR 1 309 -240 1755 168 3 11 chr3 97051544 97051855 -130472723 + AluJo SINE Alu 1 309 0 941 365 30 41 chr3 97052343 97052880 -130471698 + MER115 DNA AcHobo 5 535 -158 407 148 11 45 chr3 97052863 97052951 -130471627 + LTR30 LTR ERV1 540 624 -98 * 444 243 59 22 chr3 97052973 97053109 -130471469 + MER115 DNA AcHobo 524 664 -29 292 272 49 0 chr3 97053109 97053190 -130471388 - MIR SINE MIR -121 141 57 378 61 0 0 chr3 97053467 97053475 -130471103 + (TG)n Simple_repeat Simple_repeat 1 57 0 378 61 0 0 chr3 97053475 97053524 -130471054 + (TG)n Simple_repeat Simple_repeat 2 50 0 1619 69 0 0 chr3 97053555 97053759 -130470819 - AluY SINE Alu -14 297 94 226 315 0 0 chr3 97053850 97053904 -130470674 + L2 LINE L2 3242 3295 -18 29 0 0 0 chr3 97053976 97054005 -130470573 + AT_rich Low_complexity Low_complexity 1 29 0 2315 96 0 0 chr3 97054007 97054308 -130470270 + AluSg SINE Alu 1 301 -9 21 0 0 0 chr3 97054744 97054765 -130469813 + AT_rich Low_complexity Low_complexity 1 21 0 35 24 0 0 chr3 97055120 97055162 -130469416 + AT_rich Low_complexity Low_complexity 1 42 0 219 275 29 14 chr3 97055988 97056057 -130468521 + MER5B DNA MER1_type 1 70 -108 1824 132 38 0 chr3 97056061 97056350 -130468228 + AluJb SINE Alu 7 306 -6 403 308 69 15 chr3 97056936 97057066 -130467512 - MIR SINE MIR -117 145 9 2256 81 7 7 chr3 97057286 97057594 -130466984 - AluY SINE Alu -3 308 1 24 53 0 0 chr3 97058129 97058167 -130466411 + AT_rich Low_complexity Low_complexity 1 38 0 198 0 0 0 chr3 97058573 97058595 -130465983 + (A)n Simple_repeat Simple_repeat 1 22 0 21 89 0 0 chr3 97058751 97058807 -130465771 + AT_rich Low_complexity Low_complexity 1 56 0 1671 188 24 18 chr3 97059387 97059728 -130464850 - MER61A LTR ERV1 0 343 1 6119 80 15 34 chr3 97061918 97063787 -130460791 + SVA Other Other 1 1385 -1 192 77 0 0 chr3 97064358 97064384 -130460194 + (A)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr3 97064938 97064960 -130459618 + AT_rich Low_complexity Low_complexity 1 22 0 434 327 21 68 chr3 97065411 97065602 -130458976 - MLT1J1 LTR MaLR -126 320 150 379 288 9 0 chr3 97065602 97065713 -130458865 - MER81 DNA DNA -2 112 1 434 327 21 68 chr3 97065713 97065857 -130458721 - MLT1J1 LTR MaLR -296 150 1 244 391 94 0 chr3 97066276 97066404 -130458174 + MIR3 SINE MIR 2 141 -67 1130 147 168 5 chr3 97066420 97066717 -130457861 + Tigger3(Golem) DNA MER2_type 2 3029 0 22 35 0 0 chr3 97067149 97067178 -130457400 + AT_rich Low_complexity Low_complexity 1 29 0 1434 188 23 106 chr3 97068163 97068561 -130456017 - MLT1A1 LTR MaLR 0 365 1 211 304 0 0 chr3 97068612 97068658 -130455920 - MIR SINE MIR -164 98 53 23 0 0 0 chr3 97068733 97068756 -130455822 + AT_rich Low_complexity Low_complexity 1 23 0 1046 159 0 6 chr3 97069948 97070118 -130454460 + MER49 LTR ERV1 248 416 -507 713 238 30 12 chr3 97070497 97070661 -130453917 + MIR SINE MIR 17 183 -79 2820 123 46 24 chr3 97070661 97071141 -130453437 + MER49 LTR ERV1 1 494 -429 3037 134 36 2 chr3 97071141 97071617 -130452961 + LOR1a LTR ERV1 4 495 -2 2820 123 46 24 chr3 97071617 97071632 -130452946 + MER49 LTR ERV1 494 507 -416 384 77 0 0 chr3 97071672 97071724 -130452854 + MADE1 DNA Mariner 27 78 -2 1860 122 71 42 chr3 97071928 97072281 -130452297 - THE1B LTR MaLR -1 363 1 10269 115 35 1 chr3 97072281 97073806 -130450772 - THE1B-int LTR MaLR 0 1580 5 1740 148 7 43 chr3 97073808 97074113 -130450465 - THE1B LTR MaLR 0 364 71 21 0 0 0 chr3 97074126 97074147 -130450431 + AT_rich Low_complexity Low_complexity 1 21 0 325 296 112 8 chr3 97074261 97074386 -130450192 - MLT1J2 LTR MaLR -312 138 1 2004 119 0 10 chr3 97074545 97074863 -130449715 + AluSx SINE Alu 1 315 0 534 277 59 87 chr3 97074904 97075308 -130449270 + MER93a LTR ERV1 10 402 0 496 312 47 23 chr3 97075435 97075650 -130448928 - MER58A DNA MER1_type -3 221 2 38 68 0 0 chr3 97076707 97076780 -130447798 + AT_rich Low_complexity Low_complexity 1 73 0 227 245 196 29 chr3 97076868 97076970 -130447608 - L2 LINE L2 -3 3269 3151 211 344 17 20 chr3 97077027 97077179 -130447399 + MIR SINE MIR 46 194 -14 4403 184 26 12 chr3 97077248 97078526 -130446052 + L1PA16 LINE L1 4773 6060 -106 451 66 0 0 chr3 97078527 97078588 -130445990 + L1PA16 LINE L1 6097 6157 -9 21 0 0 0 chr3 97078712 97078733 -130445845 + AT_rich Low_complexity Low_complexity 1 21 0 21 95 0 0 chr3 97078793 97078856 -130445722 + AT_rich Low_complexity Low_complexity 1 63 0 25 31 0 0 chr3 97078892 97078924 -130445654 + AT_rich Low_complexity Low_complexity 1 32 0 795 290 88 49 chr3 97079108 97079719 -130444859 + HsTC2a DNA Tc2 107 741 -3 582 312 130 20 chr3 97080174 97080475 -130444103 - L2 LINE L2 -5 3308 2975 464 334 34 68 chr3 97080490 97080813 -130443765 - L2 LINE L2 -466 2848 2537 433 313 215 13 chr3 97080839 97081176 -130443402 - L2 LINE L2 -252 3061 2665 19749 188 28 19 chr3 97081717 97086034 -130438544 + L1M1 LINE L1 17 4407 -3158 3113 38 0 0 chr3 97086034 97086407 -130438171 + L1PA4 LINE L1 5782 6154 -1 19749 188 28 19 chr3 97086407 97088268 -130436310 + L1M1 LINE L1 4407 6250 -1315 363 223 0 33 chr3 97088262 97088383 -130436195 + L1 LINE L1 4671 4787 -2778 * 867 127 0 67 chr3 97088411 97088576 -130436002 + L1MA1 LINE L1 5903 6056 -246 979 123 25 0 chr3 97088579 97088742 -130435836 + L1MA1 LINE L1 6132 6298 -4 461 234 117 45 chr3 97088937 97089159 -130435419 - L1MCa LINE L1 -5027 1399 1162 9576 121 7 1 chr3 97089165 97091444 -130433134 - L1PA8 LINE L1 -2 6170 3880 266 269 0 9 chr3 97092118 97092226 -130432352 + CT-rich Low_complexity Low_complexity 4 110 0 205 314 14 14 chr3 97092713 97092783 -130431795 + L2 LINE L2 3196 3265 -48 350 350 94 20 chr3 97094237 97094440 -130430138 + MIR SINE MIR 34 251 -11 23 0 0 0 chr3 97095176 97095199 -130429379 + AT_rich Low_complexity Low_complexity 1 23 0 396 269 163 35 chr3 97095278 97095561 -130429017 - L1MC4 LINE L1 -1 8041 7723 203 200 27 40 chr3 97096216 97096291 -130428287 + (CATATA)n Simple_repeat Simple_repeat 5 78 0 21 36 0 0 chr3 97096728 97096756 -130427822 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 97098010 97098032 -130426546 + AT_rich Low_complexity Low_complexity 1 22 0 204 88 59 0 chr3 97098297 97098331 -130426247 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 5568 149 23 32 chr3 97098523 97099604 -130424974 - MER11C LTR ERVK 0 1071 1 30 27 0 0 chr3 97100650 97100687 -130423891 + AT_rich Low_complexity Low_complexity 1 37 0 368 89 0 0 chr3 97100901 97100957 -130423621 - L1PA7 LINE L1 -13 6141 6086 6453 83 9 3 chr3 97100958 97102150 -130422428 - L1PA7 LINE L1 -34 6120 4924 2204 156 0 26 chr3 97102218 97102565 -130422013 + MER1B DNA MER1_type 1 338 -1 331 238 163 33 chr3 97102614 97102854 -130421724 - L1MC5 LINE L1 -370 7591 7321 327 209 0 33 chr3 97102976 97103067 -130421511 - L1PA16 LINE L1 0 6166 6079 1547 139 28 3 chr3 97103085 97103373 -130421205 + L1P5 LINE L1 5312 5606 -550 325 276 133 20 chr3 97103463 97103659 -130420919 - L1MC5 LINE L1 -742 7219 7002 754 307 51 7 chr3 97103684 97103980 -130420598 - L1MC4 LINE L1 -1033 7009 6701 699 327 28 28 chr3 97104412 97104733 -130419845 + ERVL LTR ERVL 4381 4701 -1063 204 418 52 0 chr3 97105133 97105267 -130419311 + MIR SINE MIR 32 172 -90 28 0 0 0 chr3 97106494 97106522 -130418056 + AT_rich Low_complexity Low_complexity 1 28 0 282 299 54 72 chr3 97106528 97106695 -130417883 - MIR SINE MIR -85 177 14 402 225 16 116 chr3 97106893 97106930 -130417648 - L2 LINE L2 -248 3065 3026 503 214 37 43 chr3 97106930 97107117 -130417461 + MER53 DNA DNA 4 189 0 402 225 16 116 chr3 97107117 97107208 -130417370 - L2 LINE L2 -287 3026 2950 799 344 121 35 chr3 97107234 97107469 -130417109 - L2 LINE L2 -421 2893 2680 2436 50 30 10 chr3 97107469 97107768 -130416810 + AluY SINE Alu 1 305 -6 799 344 121 35 chr3 97107768 97108456 -130416122 - L2 LINE L2 -634 2680 1890 22 0 0 0 chr3 97110010 97110032 -130414546 + AT_rich Low_complexity Low_complexity 1 22 0 292 303 108 27 chr3 97110114 97110299 -130414279 - MIR SINE MIR -46 216 17 25 0 0 0 chr3 97110431 97110456 -130414122 + AT_rich Low_complexity Low_complexity 1 25 0 916 280 180 23 chr3 97110618 97111228 -130413350 - HAL1 LINE L1 -309 2198 1493 3208 211 39 20 chr3 97112800 97113753 -130410825 - L1MB1 LINE L1 -34 6134 5165 1517 245 28 0 chr3 97113752 97114148 -130410430 + L1MB1 LINE L1 4787 5193 -953 * 210 71 0 0 chr3 97114342 97114370 -130410208 + (TATG)n Simple_repeat Simple_repeat 3 30 0 1424 175 179 0 chr3 97114375 97114666 -130409912 - MER7A DNA MER2_type -5 341 1 1581 143 115 4 chr3 97115159 97115438 -130409140 + AluJb SINE Alu 1 310 -2 586 335 69 0 chr3 97115808 97116026 -130408552 + MIR SINE MIR 30 262 0 333 256 77 0 chr3 97116293 97116371 -130408207 + MER94 DNA DNA 3 86 -48 22 56 0 0 chr3 97116428 97116464 -130408114 + AT_rich Low_complexity Low_complexity 1 36 0 3022 214 184 41 chr3 97118439 97119409 -130405169 + MER52C LTR ERV1 1 1278 0 4785 117 16 19 chr3 97119415 97120362 -130404216 + MER52-int LTR ERV1 6 1033 -6058 11170 133 26 5 chr3 97120363 97122057 -130402521 + MER52-int LTR ERV1 833 2561 -4530 * 25191 113 50 28 chr3 97122033 97122952 -130401626 + MER52C-int LTR ERV1 2727 3624 -3467 185 243 54 68 chr3 97122952 97123026 -130401552 + MER5B DNA MER1_type 1 73 -105 25191 113 50 28 chr3 97123026 97123520 -130401058 + MER52C-int LTR ERV1 3624 4105 -2986 1879 136 84 32 chr3 97123520 97123866 -130400712 + THE1B LTR MaLR 1 364 0 10845 118 8 1 chr3 97123866 97125435 -130399143 + THE1B-int LTR MaLR 1 1580 0 2021 126 85 18 chr3 97125435 97125776 -130398802 + THE1B LTR MaLR 1 364 0 25191 113 50 28 chr3 97125776 97128211 -130396367 + MER52C-int LTR ERV1 4104 6738 -353 1608 96 61 4 chr3 97128215 97128444 -130396134 + MER52C-int LTR ERV1 6850 7091 0 3716 192 217 21 chr3 97128445 97129443 -130395135 + MER52C LTR ERV1 1 1271 -7 1373 242 25 22 chr3 97129759 97130118 -130394460 - MLT1A1 LTR MaLR 0 365 6 1130 184 108 93 chr3 97130445 97130777 -130393801 + MLT1A1 LTR MaLR 1 337 -28 271 189 0 19 chr3 97130901 97130954 -130393624 + MLT1A1 LTR MaLR 321 372 -2 379 386 13 6 chr3 97131962 97132120 -130392458 - L3 LINE CR1 -1396 181 23 25 31 0 0 chr3 97133485 97133517 -130391061 + AT_rich Low_complexity Low_complexity 1 32 0 213 333 26 0 chr3 97133640 97133718 -130390860 + MIR SINE MIR 75 154 -108 7056 148 25 41 chr3 97137151 97137211 -130387367 - HSMAR2 DNA Mariner -2 1300 1241 13950 112 18 9 chr3 97137211 97140172 -130384406 - L1PA8 LINE L1 -4 6168 3185 7056 148 25 41 chr3 97140172 97141430 -130383148 - HSMAR2 DNA Mariner -61 1241 3 202 283 0 0 chr3 97141430 97141490 -130383088 + (TATATG)n Simple_repeat Simple_repeat 4 63 0 4119 248 41 47 chr3 97141617 97142075 -130382503 - L1MC3 LINE L1 -9 7776 7317 2128 125 3 0 chr3 97142075 97142370 -130382208 - AluSq SINE Alu -17 296 1 4119 248 41 47 chr3 97142370 97142575 -130382003 - L1MC3 LINE L1 -468 7317 7112 12650 170 26 17 chr3 97142575 97143443 -130381135 - Tigger1 DNA MER2_type -1 2417 1558 2005 124 6 48 chr3 97143443 97143758 -130380820 - AluSx SINE Alu -10 302 1 12650 170 26 17 chr3 97143758 97145281 -130379297 - Tigger1 DNA MER2_type -860 1558 4 4119 248 41 47 chr3 97145281 97146144 -130378434 - L1MC3 LINE L1 -673 7112 6257 783 278 125 12 chr3 97146117 97146437 -130378141 - L1MCb LINE L1 -5556 489 134 * 1433 217 73 45 chr3 97146439 97146863 -130377715 + LTR47B LTR ERVL 1 436 -7 257 238 128 55 chr3 97146872 97147036 -130377542 - L1MCb LINE L1 -6244 320 145 368 238 21 62 chr3 97148996 97149055 -130375523 - MER53 DNA DNA -1 188 128 2123 105 3 0 chr3 97149055 97149349 -130375229 - AluSx SINE Alu -17 295 1 368 238 21 62 chr3 97149349 97149482 -130375096 - MER53 DNA DNA -61 128 4 332 340 19 0 chr3 97149806 97149909 -130374669 - MER5A DNA MER1_type -78 111 7 558 254 141 75 chr3 97150104 97150512 -130374066 + L2 LINE L2 2700 3147 -166 2231 99 0 10 chr3 97150512 97150825 -130373753 - AluSg SINE Alu 0 310 1 558 254 141 75 chr3 97150825 97150977 -130373601 + L2 LINE L2 3147 3288 -25 202 254 36 0 chr3 97150939 97150994 -130373584 + MIR SINE MIR 206 262 0 * 22506 133 13 3 chr3 97151245 97154984 -130369594 - L1PA8A LINE L1 -672 5459 1685 213 222 0 0 chr3 97155557 97155602 -130368976 - L2 LINE L2 -4 3309 3265 32 0 0 0 chr3 97155631 97155663 -130368915 + AT_rich Low_complexity Low_complexity 1 32 0 23 54 0 0 chr3 97155771 97155808 -130368770 + AT_rich Low_complexity Low_complexity 1 37 0 23 97 0 0 chr3 97156265 97156337 -130368241 + AT_rich Low_complexity Low_complexity 1 72 0 27 0 0 0 chr3 97157126 97157153 -130367425 + AT_rich Low_complexity Low_complexity 1 27 0 732 292 105 29 chr3 97157180 97157591 -130366987 + MLT1D LTR MaLR 64 505 0 26 30 0 0 chr3 97157617 97157650 -130366928 + AT_rich Low_complexity Low_complexity 1 33 0 498 239 82 0 chr3 97158085 97158219 -130366359 + MIR SINE MIR 78 222 -40 252 122 0 0 chr3 97158814 97158855 -130365723 + (TG)n Simple_repeat Simple_repeat 1 41 0 369 0 0 0 chr3 97159440 97159481 -130365097 + (CA)n Simple_repeat Simple_repeat 2 42 0 530 203 68 23 chr3 97160975 97161152 -130363426 + MER53 DNA DNA 2 186 -3 267 360 13 39 chr3 97161192 97161345 -130363233 + LTR16C LTR ERVL 287 435 -56 23 0 0 0 chr3 97161644 97161667 -130362911 + AT_rich Low_complexity Low_complexity 1 23 0 2305 120 5 40 chr3 97161721 97161790 -130362788 - THE1B LTR MaLR 0 364 294 2472 45 7 0 chr3 97161790 97162098 -130362480 - AluY SINE Alu -1 310 1 2305 120 5 40 chr3 97162098 97162404 -130362174 - THE1B LTR MaLR -70 294 2 239 363 35 4 chr3 97162415 97162641 -130361937 - L1M4 LINE L1 -1166 4980 4748 934 123 139 1 chr3 97162693 97162733 -130361845 - MLT2A2 LTR ERVL 0 453 420 332 88 18 0 chr3 97162733 97162790 -130361788 + (TA)n Simple_repeat Simple_repeat 2 59 0 934 123 139 1 chr3 97162790 97162923 -130361655 - MLT2A2 LTR ERVL -33 420 293 774 253 73 49 chr3 97163799 97164143 -130360435 - L1ME1 LINE L1 -4 6162 5811 * 4364 191 59 16 chr3 97164139 97165111 -130359467 - L1MC1 LINE L1 0 6333 5321 32 43 0 0 chr3 97165132 97165178 -130359400 + AT_rich Low_complexity Low_complexity 1 46 0 858 146 30 0 chr3 97165178 97165343 -130359235 - L1MA8 LINE L1 -5 6286 6117 3113 186 103 6 chr3 97165345 97166035 -130358543 - L1MA7 LINE L1 -270 6021 5265 514 222 35 2 chr3 97166047 97166207 -130358371 + L1 LINE L1 4275 4436 -1710 1515 188 47 0 chr3 97166211 97166531 -130358047 - L1MA7 LINE L1 -894 5252 4918 269 164 3 0 chr3 97166665 97166727 -130357851 - L1MC1 LINE L1 -926 5316 5260 232 211 18 0 chr3 97166754 97166811 -130357767 + (TA)n Simple_repeat Simple_repeat 1 58 0 6277 235 18 8 chr3 97167956 97169543 -130355035 - L1 LINE L1 -1097 5049 3448 5094 153 17 18 chr3 97169661 97170611 -130353967 + L1PA16 LINE L1 5215 6163 -3 200 111 0 28 chr3 97170614 97170650 -130353928 + (GGAAA)n Simple_repeat Simple_repeat 1 35 0 22 56 0 0 chr3 97171125 97171161 -130353417 + AT_rich Low_complexity Low_complexity 1 36 0 370 321 113 18 chr3 97173748 97173916 -130350662 - MIR SINE MIR -65 197 14 246 200 0 0 chr3 97174117 97174162 -130350416 - MIR SINE MIR -154 108 64 2144 118 0 0 chr3 97174675 97174972 -130349606 - AluSq SINE Alu -16 297 1 21 0 0 0 chr3 97175314 97175335 -130349243 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr3 97175445 97175478 -130349100 + AT_rich Low_complexity Low_complexity 1 33 0 396 280 35 14 chr3 97175664 97175807 -130348771 + MER69 DNA AcHobo 1 146 -2380 21 36 0 0 chr3 97176119 97176147 -130348431 + AT_rich Low_complexity Low_complexity 1 28 0 2428 282 69 66 chr3 97176236 97176488 -130348090 + L1MB7 LINE L1 20 270 -6589 2189 59 19 36 chr3 97176488 97176612 -130347966 + AluY SINE Alu 1 126 -185 189 0 0 0 chr3 97176612 97176633 -130347945 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 2189 59 19 36 chr3 97176633 97176815 -130347763 + AluY SINE Alu 126 302 -9 2428 282 69 66 chr3 97176815 97177608 -130346970 + L1MB7 LINE L1 270 1068 -5791 1337 275 47 22 chr3 97177617 97178200 -130346378 + L1MB7 LINE L1 1343 1935 -4936 * 2473 207 39 66 chr3 97178194 97178952 -130345626 + L1MB7 LINE L1 5335 6084 -905 2238 95 0 7 chr3 97178952 97179247 -130345331 + AluY SINE Alu 1 293 -18 2473 207 39 66 chr3 97179247 97179744 -130344834 + L1MB7 LINE L1 6084 6592 -397 876 258 59 50 chr3 97179745 97180067 -130344511 - MLT1B LTR MaLR 0 390 66 1069 192 43 50 chr3 97180311 97180592 -130343986 + L1MB7 LINE L1 6583 6861 -134 1087 273 38 18 chr3 97180741 97181133 -130343445 - L1ME1 LINE L1 -167 5999 5600 322 265 12 0 chr3 97181151 97181234 -130343344 - MIR SINE MIR -9 253 170 27 29 0 0 chr3 97181265 97181299 -130343279 + AT_rich Low_complexity Low_complexity 1 34 0 2498 166 88 31 chr3 97181970 97182466 -130342112 - L1MA8 LINE L1 -7 6284 5753 2023 89 3 45 chr3 97182466 97182779 -130341799 - AluY SINE Alu -11 300 1 2498 166 88 31 chr3 97182779 97182830 -130341748 - L1MA8 LINE L1 -538 5753 5706 7324 183 23 25 chr3 97182931 97183714 -130340864 - L1P3 LINE L1 -4410 2051 1268 213 94 0 0 chr3 97183714 97183746 -130340832 + (TTG)n Simple_repeat Simple_repeat 2 33 0 7324 183 23 25 chr3 97183746 97184946 -130339632 - L1P3 LINE L1 -5193 1268 15 1208 145 51 8 chr3 97184945 97185179 -130339399 - L1MA8 LINE L1 -743 5403 5160 * 276 326 91 39 chr3 97185197 97185427 -130339151 + L2 LINE L2 2157 2398 -916 267 114 0 0 chr3 97185428 97185472 -130339106 + (ATG)n Simple_repeat Simple_repeat 2 45 0 278 348 80 36 chr3 97185628 97185878 -130338700 + L2 LINE L2 2596 2856 -458 303 402 57 14 chr3 97186140 97186421 -130338157 + LTR16B LTR ERVL 51 343 -121 1851 251 29 57 chr3 97186465 97186996 -130337582 + MLT2B3 LTR ERVL 1 517 -37 216 111 0 0 chr3 97186996 97187032 -130337546 + (CA)n Simple_repeat Simple_repeat 2 37 0 1851 251 29 57 chr3 97187032 97187062 -130337516 + MLT2B3 LTR ERVL 517 546 -8 2479 85 9 12 chr3 97187287 97187641 -130336937 - THE1A LTR MaLR 0 428 3 11260 105 10 0 chr3 97187643 97189208 -130335370 - THE1A-int LTR MaLR 0 1580 1 2520 99 8 3 chr3 97189208 97189561 -130335017 - THE1A LTR MaLR 0 355 1 2793 127 7 14 chr3 97189663 97190096 -130334482 + MER57B LTR ERV1 1 430 -4 23 54 0 0 chr3 97191293 97191330 -130333248 + AT_rich Low_complexity Low_complexity 1 37 0 1882 120 4 4 chr3 97191530 97191797 -130332781 + AluSx SINE Alu 1 267 -45 802 244 63 80 chr3 97191907 97192271 -130332307 + MLT1D LTR MaLR 4 361 -144 2153 174 41 28 chr3 97192271 97192805 -130331773 + pTR5 LTR ERV1 743 1283 -1155 564 259 64 45 chr3 97192807 97192887 -130331691 + MLT1D LTR MaLR 279 356 -149 4074 129 76 55 chr3 97192887 97193693 -130330885 + LTR12 LTR ERV1 4 826 0 564 259 64 45 chr3 97193693 97193832 -130330746 + MLT1D LTR MaLR 356 502 -3 233 300 11 0 chr3 97194160 97194250 -130330328 + L1ME LINE L1 5762 5852 -269 931 291 33 23 chr3 97194307 97194613 -130329965 + LTR16C LTR ERVL 88 396 -95 24 32 0 0 chr3 97194681 97194712 -130329866 + AT_rich Low_complexity Low_complexity 1 31 0 419 352 73 42 chr3 97196613 97197120 -130327458 - L2 LINE L2 -8 3305 2729 14945 36 7 1 chr3 97197225 97199061 -130325517 - L1PA4 LINE L1 -1103 5043 3197 7519 29 2 0 chr3 97199061 97200155 -130324423 + L1PA4 LINE L1 5059 6154 -1 457 254 44 0 chr3 97200285 97200399 -130324179 - MER58B DNA MER1_type -19 322 204 261 98 0 0 chr3 97201136 97201177 -130323401 + (TG)n Simple_repeat Simple_repeat 2 42 0 1424 209 62 28 chr3 97201201 97201605 -130322973 + MLT1D LTR MaLR 21 484 -21 2486 147 34 5 chr3 97201605 97202021 -130322557 - MSTA LTR MaLR 0 428 1 1424 209 62 28 chr3 97202021 97202044 -130322534 + MLT1D LTR MaLR 484 505 0 213 111 0 28 chr3 97202920 97202956 -130321622 + (CAG)n Simple_repeat Simple_repeat 2 36 0 860 352 103 28 chr3 97203367 97204008 -130320570 - L2 LINE L2 0 3313 2721 1964 149 0 3 chr3 97204008 97204309 -130320269 + AluSx SINE Alu 1 300 -12 860 352 103 28 chr3 97204309 97204363 -130320215 - L2 LINE L2 -592 2721 2672 1500 180 82 56 chr3 97204363 97204741 -130319837 - MLT1B LTR MaLR -2 388 1 860 352 103 28 chr3 97204741 97204995 -130319583 - L2 LINE L2 -641 2672 2278 22 0 0 0 chr3 97205228 97205250 -130319328 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 97205682 97205704 -130318874 + AT_rich Low_complexity Low_complexity 1 22 0 26 50 0 0 chr3 97205816 97205856 -130318722 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr3 97206311 97206342 -130318236 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 97206545 97206566 -130318012 + AT_rich Low_complexity Low_complexity 1 21 0 488 230 7 0 chr3 97206970 97207105 -130317473 + (TA)n Simple_repeat Simple_repeat 1 136 0 465 207 11 0 chr3 97207247 97207334 -130317244 + MER58 DNA MER1_type 2325 2412 -8 198 0 0 0 chr3 97207959 97207981 -130316597 + (TC)n Simple_repeat Simple_repeat 1 22 0 * 315 0 0 0 chr3 97207980 97208015 -130316563 + (CA)n Simple_repeat Simple_repeat 1 35 0 973 202 169 43 chr3 97208497 97208799 -130315779 + Tigger4(Zombi) DNA MER2_type 1 2710 -21 222 209 0 0 chr3 97209183 97209226 -130315352 + (CA)n Simple_repeat Simple_repeat 2 44 0 3176 145 7 39 chr3 97209441 97209985 -130314593 - MER1A DNA MER1_type 0 527 1 699 268 145 18 chr3 97211110 97211558 -130313020 + MER20B DNA MER1_type 270 774 -9 207 146 0 0 chr3 97212375 97212416 -130312162 + (TA)n Simple_repeat Simple_repeat 1 41 0 21 0 0 0 chr3 97213051 97213072 -130311506 + AT_rich Low_complexity Low_complexity 1 21 0 2380 252 264 1 chr3 97213075 97213374 -130311204 + L1MDa LINE L1 66 285 -6255 213 39 0 0 chr3 97213374 97213400 -130311178 + (CA)n Simple_repeat Simple_repeat 2 27 0 2380 252 264 1 chr3 97213400 97213982 -130310596 + L1MDa LINE L1 285 1179 -5361 31 0 0 0 chr3 97213982 97214013 -130310565 + AT_rich Low_complexity Low_complexity 1 31 0 4616 218 62 56 chr3 97214017 97214503 -130310075 - L1MA9 LINE L1 -39 6273 5791 229 250 88 12 chr3 97214503 97214583 -130309995 + LTR66 LTR ERVL 378 463 -147 4616 218 62 56 chr3 97214583 97216193 -130308385 - L1MA9 LINE L1 -521 5791 4084 1654 184 10 3 chr3 97216195 97216500 -130308078 + MER4E LTR ERV1 1 307 -472 989 230 92 4 chr3 97216510 97216771 -130307807 + L1MD1 LINE L1 5944 6227 -15 1725 227 199 9 chr3 97216970 97217548 -130307030 - MER76 LTR ERV 0 688 1 23 0 0 0 chr3 97218274 97218297 -130306281 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr3 97218699 97218734 -130305844 + AT_rich Low_complexity Low_complexity 1 35 0 1531 46 10 5 chr3 97219264 97219458 -130305120 - AluY SINE Alu -13 298 104 30 45 0 0 chr3 97219478 97219522 -130305056 + AT_rich Low_complexity Low_complexity 1 44 0 2310 253 35 22 chr3 97219840 97220389 -130304189 + L1PA15 LINE L1 1098 1653 -5186 459 221 117 0 chr3 97220398 97220433 -130304145 + L1PA13 LINE L1 2697 2727 -4122 235 0 57 0 chr3 97220433 97220468 -130304110 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 459 221 117 0 chr3 97220468 97220577 -130304001 + L1PA13 LINE L1 2727 2858 -3991 15088 219 19 15 chr3 97220625 97225736 -130298842 + L1PA15 LINE L1 1736 6865 -3 711 247 46 60 chr3 97226313 97227153 -130297425 - L1ME1 LINE L1 -8 6158 5145 249 140 53 0 chr3 97227211 97227268 -130297310 - L1 LINE L1 -1110 5036 4977 2659 142 33 5 chr3 97227268 97227698 -130296880 - Tigger3b DNA MER2_type 0 1231 790 3662 168 24 0 chr3 97227698 97228353 -130296225 - Tigger3b DNA MER2_type -553 678 8 376 198 31 0 chr3 97228378 97228474 -130296104 - L1 LINE L1 -1198 4948 4850 568 241 62 15 chr3 97228483 97228678 -130295900 + L1MD3 LINE L1 7792 7995 0 478 291 19 15 chr3 97228671 97228877 -130295701 - L1 LINE L1 -1284 4862 4656 * 431 125 31 10 chr3 97228884 97228980 -130295598 + T-rich Low_complexity Low_complexity 3 100 0 1799 170 10 13 chr3 97228985 97229297 -130295281 - AluJo SINE Alu -1 311 1 694 249 47 5 chr3 97229297 97229510 -130295068 - L1 LINE L1 -1483 4663 4442 25 31 0 0 chr3 97229577 97229609 -130294969 + AT_rich Low_complexity Low_complexity 1 32 0 803 248 111 21 chr3 97229669 97229903 -130294675 + MER2 DNA MER2_type 91 345 0 499 233 19 79 chr3 97229934 97230252 -130294326 - L1 LINE L1 -3005 3141 2843 1320 174 59 86 chr3 97280323 97280697 -130243881 - MLT1A1 LTR MaLR -1 364 1 667 339 54 12 chr3 97282098 97282431 -130242147 + MLT1I LTR MaLR 63 409 0 1445 118 34 91 chr3 97282743 97282787 -130241791 + Tigger1 DNA MER2_type 573 618 -1800 4309 29 2 4 chr3 97282787 97283303 -130241275 + L1PA3 LINE L1 5638 6152 -3 1445 118 34 91 chr3 97283303 97283554 -130241024 + Tigger1 DNA MER2_type 618 851 -1567 1987 125 3 7 chr3 97283554 97283842 -130240736 + AluSx SINE Alu 1 287 -25 754 100 34 4 chr3 97283842 97284083 -130240495 + (TA)n Simple_repeat Simple_repeat 1 248 0 1433 196 18 31 chr3 97284084 97284411 -130240167 - Tigger1 DNA MER2_type -75 2343 2021 574 329 111 40 chr3 97284647 97285198 -130239380 + L2 LINE L2 1405 1994 -1320 199 314 135 29 chr3 97285228 97285435 -130239143 + L2 LINE L2 2147 2375 -939 336 216 117 53 chr3 97285469 97285640 -130238938 - MER53 DNA DNA 0 189 8 552 349 83 34 chr3 97285763 97286310 -130238268 + L2 LINE L2 2728 3313 0 24 53 0 0 chr3 97287840 97287878 -130236700 + AT_rich Low_complexity Low_complexity 1 38 0 801 232 88 73 chr3 97288029 97288451 -130236127 + MSTC LTR MaLR 1 428 0 39 22 0 0 chr3 97288752 97288798 -130235780 + AT_rich Low_complexity Low_complexity 1 46 0 329 119 0 51 chr3 97288931 97288990 -130235588 + HERVL LTR ERVL 3761 3816 -1838 244 88 0 0 chr3 97288990 97289024 -130235554 + MLT2A1 LTR ERVL 410 443 -1 1912 148 0 0 chr3 97289024 97289301 -130235277 - AluSx SINE Alu -33 279 3 23 33 0 0 chr3 97289405 97289435 -130235143 + AT_rich Low_complexity Low_complexity 1 30 0 207 114 0 0 chr3 97289461 97289496 -130235082 + (CA)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr3 97289530 97289552 -130235026 + AT_rich Low_complexity Low_complexity 1 22 0 1170 331 38 2 chr3 97289589 97290015 -130234563 + L1MA4 LINE L1 1294 1734 -5475 4034 216 52 3 chr3 97290018 97291329 -130233249 + L1MA4 LINE L1 2297 3675 -3533 2457 204 48 33 chr3 97291323 97292388 -130232190 + L1MA4 LINE L1 5774 6858 -507 * 722 142 49 12 chr3 97292488 97292650 -130231928 + L1MA4 LINE L1 7191 7358 -4 2192 96 0 3 chr3 97292659 97292971 -130231607 + AluY SINE Alu 1 311 0 21 36 0 0 chr3 97293901 97293929 -130230649 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr3 97294109 97294149 -130230429 + AT_rich Low_complexity Low_complexity 1 40 0 2185 161 6 6 chr3 97294202 97294562 -130230016 - THE1C LTR MaLR -1 374 15 2288 64 0 17 chr3 97294673 97294970 -130229608 - AluY SINE Alu -19 292 1 31 26 0 0 chr3 97295015 97295053 -130229525 + AT_rich Low_complexity Low_complexity 1 38 0 2646 184 28 14 chr3 97295205 97295711 -130228867 - Tigger1 DNA MER2_type -1904 514 2 2307 67 0 0 chr3 97295713 97296036 -130228542 + AluY SINE Alu 3 325 0 226 385 15 24 chr3 97296893 97297098 -130227480 + MIR SINE MIR 45 247 -15 23 54 0 0 chr3 97297150 97297187 -130227391 + AT_rich Low_complexity Low_complexity 1 37 0 885 124 36 0 chr3 97297355 97297492 -130227086 - L1PA11 LINE L1 -2 6172 6031 697 244 101 12 chr3 97297881 97298139 -130226439 + MER46C DNA MER2_type 55 335 -3 226 259 49 7 chr3 97298223 97298366 -130226212 + (TA)n Simple_repeat Simple_repeat 1 149 0 1391 173 27 0 chr3 97298505 97298765 -130225813 + L1MA8 LINE L1 5920 6186 -105 25 65 0 0 chr3 97298845 97298891 -130225687 + AT_rich Low_complexity Low_complexity 1 46 0 23 33 0 0 chr3 97299698 97299728 -130224850 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr3 97299801 97299824 -130224754 + AT_rich Low_complexity Low_complexity 1 23 0 1850 136 11 7 chr3 97299837 97300123 -130224455 - AluSq SINE Alu -23 290 4 22 94 0 0 chr3 97300275 97300339 -130224239 + AT_rich Low_complexity Low_complexity 1 64 0 548 67 0 0 chr3 97300801 97300876 -130223702 - L1PA5 LINE L1 -4 6150 6076 229 128 128 21 chr3 97300893 97300940 -130223638 - L1PA8 LINE L1 -33 6139 6088 * 6488 66 2 6 chr3 97300924 97302094 -130222484 - L1PA5 LINE L1 -34 6120 4956 * 10151 62 5 1 chr3 97302085 97303397 -130221181 + L1PA5 LINE L1 3614 4930 -1216 31 44 0 0 chr3 97307074 97307119 -130217459 + AT_rich Low_complexity Low_complexity 1 45 0 471 288 49 38 chr3 97307270 97307454 -130217124 - MLT1L LTR MaLR -14 601 416 241 259 0 0 chr3 97308820 97308874 -130215704 + CT-rich Low_complexity Low_complexity 3 56 0 2090 235 77 0 chr3 97309027 97309643 -130214935 + L1MC4 LINE L1 7323 8036 -6 23 0 0 0 chr3 97311576 97311599 -130212979 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 97311976 97311999 -130212579 + AT_rich Low_complexity Low_complexity 1 23 0 1418 167 0 29 chr3 97312155 97312401 -130212177 - AluSx SINE Alu -73 239 1 6463 182 113 38 chr3 97312923 97314390 -130210188 + MER52A LTR ERV1 211 1754 -1 181 295 39 77 chr3 97315741 97315897 -130208681 - MIR SINE MIR -36 226 77 349 259 130 0 chr3 97317895 97318003 -130206575 + L2 LINE L2 3187 3308 -5 285 346 19 0 chr3 97319433 97319540 -130205038 - LTR16B LTR ERVL -2 462 354 466 299 19 63 chr3 97319612 97319819 -130204759 - LTR16B LTR ERVL -266 198 1 301 219 112 17 chr3 97319824 97319965 -130204613 + L1ME1 LINE L1 6002 6160 -6 689 311 105 29 chr3 97320109 97320556 -130204022 - HAL1 LINE L1 -794 1713 1233 264 193 35 0 chr3 97320557 97320614 -130203964 - LTR67 LTR ERVL -5 552 494 1783 146 0 71 chr3 97321061 97321397 -130203181 - AluSx SINE Alu 0 312 1 914 301 6 27 chr3 97321913 97322242 -130202336 + L2 LINE L2 595 916 -2398 479 217 11 85 chr3 97322983 97323172 -130201406 - L1ME1 LINE L1 -43 6123 5949 539 327 40 0 chr3 97323714 97323913 -130200665 + MER63A DNA MER1_type 2 208 -2 331 333 68 80 chr3 97324345 97324783 -130199795 + L2 LINE L2 2818 3250 -63 313 261 43 92 chr3 97324963 97325147 -130199431 - MERVL LTR ERVL -1292 4193 4019 827 273 16 0 chr3 97325973 97326167 -130198411 - MER20B DNA MER1_type -22 197 1 279 0 0 0 chr3 97326781 97326812 -130197766 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2367 79 3 3 chr3 97328116 97328420 -130196158 + AluSg SINE Alu 1 304 -6 248 426 27 14 chr3 97330873 97331021 -130193557 - L2 LINE L2 0 3272 3123 442 210 125 2 chr3 97331101 97331216 -130193362 - L1P4 LINE L1 -526 5639 5514 325 217 0 0 chr3 97331225 97331285 -130193293 + L1M2 LINE L1 5734 5793 -498 279 131 81 20 chr3 97331285 97331384 -130193194 + (TA)n Simple_repeat Simple_repeat 1 105 0 1959 179 5 21 chr3 97331388 97331767 -130192811 + L1PB4 LINE L1 5782 6154 -2 276 379 29 7 chr3 97331886 97332026 -130192552 - L2 LINE L2 -328 2985 2843 1523 230 48 59 chr3 97332052 97332547 -130192031 + MLT1D LTR MaLR 16 505 0 429 395 9 18 chr3 97332553 97332781 -130191797 - L2 LINE L2 -502 2812 2587 765 344 47 22 chr3 97332896 97333303 -130191275 - L2 LINE L2 -1086 2228 1812 24 32 0 0 chr3 97333432 97333463 -130191115 + AT_rich Low_complexity Low_complexity 1 31 0 1571 202 34 7 chr3 97333717 97334014 -130190564 + AluJo SINE Alu 4 308 -4 2330 231 93 34 chr3 97334706 97335649 -130188929 + L1M4c LINE L1 540 1538 -4846 1717 173 14 0 chr3 97335665 97336071 -130188507 - L1P4 LINE L1 -602 5564 5152 2325 137 46 5 chr3 97336133 97336521 -130188057 - Tigger3(Golem) DNA MER2_type -24 3005 2602 814 225 0 0 chr3 97336624 97336775 -130187803 - Tigger3(Golem) DNA MER2_type -2878 151 1 3420 211 98 19 chr3 97336930 97338240 -130186338 - MER52A LTR ERV1 0 1755 1 737 283 121 43 chr3 97338367 97338781 -130185797 - MLT1C LTR MaLR 0 467 22 882 262 46 20 chr3 97338888 97339239 -130185339 - L1M4 LINE L1 -1815 4331 3972 38 89 0 0 chr3 97339352 97339453 -130185125 + AT_rich Low_complexity Low_complexity 1 101 0 542 273 32 56 chr3 97339839 97340055 -130184523 + MIR SINE MIR 32 242 -20 221 322 0 0 chr3 97340058 97340117 -130184461 + L2 LINE L2 3116 3174 -98 284 305 62 23 chr3 97340900 97341028 -130183550 + MER5B DNA MER1_type 37 169 -9 1365 321 42 7 chr3 97341235 97341683 -130182895 + MLT1E2 LTR MaLR 159 622 -4 181 354 83 36 chr3 97341820 97342012 -130182566 + L2 LINE L2 242 442 -2872 2049 125 7 0 chr3 97342959 97343263 -130181315 + AluSq SINE Alu 5 310 -3 349 138 0 62 chr3 97343273 97343353 -130181225 + MER41B LTR ERV1 481 555 -80 26 30 0 0 chr3 97343353 97343386 -130181192 + AT_rich Low_complexity Low_complexity 1 33 0 186 369 216 8 chr3 97343596 97343837 -130180741 + L2 LINE L2 1879 2169 -1145 194 345 55 45 chr3 97343872 97344072 -130180506 + L2 LINE L2 2400 2601 -713 23 78 0 0 chr3 97344500 97344551 -130180027 + AT_rich Low_complexity Low_complexity 1 51 0 1483 161 39 56 chr3 97344562 97344867 -130179711 - AluJo SINE Alu -12 300 1 417 222 11 11 chr3 97345904 97346018 -130178560 + FLAM_A SINE Alu 24 137 0 305 305 80 20 chr3 97346340 97346491 -130178087 - L1MC4a LINE L1 -956 6852 6693 29 28 0 0 chr3 97346602 97346638 -130177940 + AT_rich Low_complexity Low_complexity 1 36 0 2893 261 95 17 chr3 97347055 97348988 -130175590 - L1ME1 LINE L1 -220 6226 4161 2289 195 9 79 chr3 97349004 97349533 -130175045 - MLT2B3 LTR ERVL -4 550 59 309 342 17 17 chr3 97349536 97349656 -130174922 - L1ME1 LINE L1 -4813 1613 1494 382 307 27 31 chr3 97349658 97349883 -130174695 - L1ME1 LINE L1 -4896 1532 1309 1012 311 52 47 chr3 97350034 97350655 -130173923 - L1ME1 LINE L1 -5748 859 236 596 336 123 7 chr3 97351215 97351507 -130173071 - L3 LINE CR1 -12 1565 1240 29 0 0 0 chr3 97351564 97351593 -130172985 + AT_rich Low_complexity Low_complexity 1 29 0 2638 126 12 12 chr3 97352110 97352539 -130172039 - L1PA11 LINE L1 -2194 3952 3524 7807 161 15 27 chr3 97352539 97354751 -130169827 + L1PA11 LINE L1 3956 6172 -2 2309 85 0 19 chr3 97354755 97355071 -130169507 + AluY SINE Alu 1 310 -1 400 273 97 30 chr3 97356068 97356233 -130168345 + L1ME LINE L1 5549 5724 -397 28 61 0 0 chr3 97356233 97356282 -130168296 + AT_rich Low_complexity Low_complexity 1 49 0 1975 233 18 16 chr3 97356330 97356768 -130167810 + MER70B LTR ERVL 3 441 -137 278 358 37 22 chr3 97359364 97359498 -130165080 - MIR SINE MIR -98 164 29 210 211 35 0 chr3 97359702 97359759 -130164819 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 1448 115 41 0 chr3 97359914 97360132 -130164446 + MER30 DNA MER1_type 4 230 0 28 0 0 0 chr3 97360689 97360717 -130163861 + AT_rich Low_complexity Low_complexity 1 28 0 24 68 0 27 chr3 97360749 97360791 -130163787 + AT_rich Low_complexity Low_complexity 1 43 -29 2165 109 0 0 chr3 97360791 97361102 -130163476 + AluSq SINE Alu 1 311 0 24 68 0 27 chr3 97361102 97361132 -130163446 + AT_rich Low_complexity Low_complexity 43 72 0 30 0 0 0 chr3 97361845 97361875 -130162703 + AT_rich Low_complexity Low_complexity 1 30 0 1978 88 0 0 chr3 97362582 97362832 -130161746 - AluY SINE Alu -15 296 47 28 48 0 0 chr3 97362854 97362896 -130161682 + AT_rich Low_complexity Low_complexity 1 42 0 2541 204 67 9 chr3 97362902 97363486 -130161092 - L1MA9 LINE L1 -42 6270 5653 3090 174 31 12 chr3 97363538 97364182 -130160396 + L1 LINE L1 4342 4997 -1149 697 222 59 9 chr3 97364153 97364374 -130160204 + L1M2 LINE L1 4310 4541 -1605 * 581 264 43 34 chr3 97364357 97364559 -130160019 + L1M2 LINE L1 4987 5193 -953 * 1218 225 55 17 chr3 97364559 97364848 -130159730 + AluJo SINE Alu 1 300 -2 581 264 43 34 chr3 97364848 97364880 -130159698 + L1M2 LINE L1 5193 5223 -923 536 181 13 20 chr3 97364888 97365037 -130159541 + GA-rich Low_complexity Low_complexity 1 148 0 783 169 78 0 chr3 97365057 97365223 -130159355 + L1M2 LINE L1 5200 5378 -768 * 1856 71 37 7 chr3 97365217 97365486 -130159092 - L1PA7 LINE L1 -3587 2559 2283 19579 89 2 1 chr3 97365486 97369055 -130155523 + L1PA7 LINE L1 2552 6152 -2 715 181 13 7 chr3 97369102 97369251 -130155327 + L1M2 LINE L1 5366 5515 -797 22 0 0 0 chr3 97369258 97369280 -130155298 + AT_rich Low_complexity Low_complexity 1 22 0 241 214 0 18 chr3 97369989 97370045 -130154533 + (TA)n Simple_repeat Simple_repeat 1 55 0 2054 122 3 3 chr3 97370051 97370346 -130154232 - AluSg SINE Alu -13 297 3 27 62 0 0 chr3 97370845 97370893 -130153685 + AT_rich Low_complexity Low_complexity 1 48 0 516 109 10 20 chr3 97370899 97371000 -130153578 + (TTTC)n Simple_repeat Simple_repeat 4 103 0 1005 83 0 0 chr3 97371187 97371331 -130153247 - L1P LINE L1 -1336 4810 4667 391 129 0 0 chr3 97371332 97371402 -130153176 + L1PA3 LINE L1 6086 6155 0 292 250 14 0 chr3 97372181 97372253 -130152325 + CT-rich Low_complexity Low_complexity 1 73 0 443 193 14 21 chr3 97372277 97372417 -130152161 + CT-rich Low_complexity Low_complexity 2 140 0 441 220 20 16 chr3 97372435 97372693 -130151885 + CT-rich Low_complexity Low_complexity 1 259 0 188 184 20 0 chr3 97373472 97373521 -130151057 + (TA)n Simple_repeat Simple_repeat 2 51 0 423 326 49 40 chr3 97373543 97373767 -130150811 - LTR40a LTR ERVL -87 432 207 474 92 41 20 chr3 97373767 97373865 -130150713 + GA-rich Low_complexity Low_complexity 1 100 0 269 320 13 0 chr3 97374535 97374610 -130149968 - L2 LINE L2 -679 2635 2560 1942 197 176 0 chr3 97374962 97375404 -130149174 + MLT2B1 LTR ERVL 1 520 0 23 33 0 0 chr3 97375749 97375779 -130148799 + AT_rich Low_complexity Low_complexity 1 30 0 529 311 20 25 chr3 97377331 97377527 -130147051 + MIR SINE MIR 9 203 -59 284 304 87 0 chr3 97377516 97377608 -130146970 + MER5B DNA MER1_type 17 116 -62 * 1674 147 14 11 chr3 97377633 97377912 -130146666 + AluSx SINE Alu 1 280 -32 324 0 0 0 chr3 97377915 97377951 -130146627 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 237 316 20 51 chr3 97379011 97379109 -130145469 + MLT1H LTR MaLR 229 323 -226 377 297 48 28 chr3 97379141 97379286 -130145292 + MLT1H LTR MaLR 387 537 -8 1140 256 62 19 chr3 97379713 97380086 -130144492 - MSTD LTR MaLR -1 431 3 862 198 141 0 chr3 97381481 97381708 -130142870 - MER44D DNA MER2_type -80 529 1 2137 76 45 3 chr3 97381956 97382244 -130142334 + AluY SINE Alu 1 300 -11 658 361 17 45 chr3 97382881 97383343 -130141235 - LTR16B LTR ERVL 0 464 16 1784 157 25 0 chr3 97383783 97384063 -130140515 - AluJb SINE Alu -25 287 1 22 0 0 0 chr3 97384065 97384087 -130140491 + AT_rich Low_complexity Low_complexity 1 22 0 2340 53 0 0 chr3 97384094 97384402 -130140176 + AluY SINE Alu 1 308 0 261 157 20 20 chr3 97384542 97384593 -130139985 + Alu SINE Alu 2 52 -249 1709 167 10 16 chr3 97384621 97384927 -130139651 + AluSx SINE Alu 1 304 -8 266 258 53 68 chr3 97385264 97385446 -130139132 + L1M4c LINE L1 1629 1838 -4544 1157 239 125 49 chr3 97385480 97386802 -130137776 + L1ME LINE L1 4356 5822 -342 792 180 93 0 chr3 97387512 97387673 -130136905 + MER3 DNA MER1_type 1 129 -80 258 32 0 0 chr3 97387751 97387782 -130136796 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 1287 249 86 25 chr3 97387786 97388570 -130136008 - L1MC/D LINE L1 -557 5685 4851 1113 146 56 19 chr3 97388643 97388856 -130135722 - THE1C LTR MaLR -154 221 1 288 239 0 0 chr3 97388856 97388927 -130135651 + L1M4c LINE L1 1821 1891 -4492 * 7122 11 0 0 chr3 97388916 97389757 -130134821 + L1PA2 LINE L1 5326 6166 0 801 289 35 29 chr3 97389758 97390100 -130134478 + L1M4c LINE L1 1476 1819 -4565 2202 268 91 12 chr3 97390158 97390423 -130134155 + L1M4c LINE L1 1974 2216 -4166 294 29 0 0 chr3 97390423 97390458 -130134120 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 2202 268 91 12 chr3 97390458 97391452 -130133126 + L1M4c LINE L1 2216 3339 -3043 1994 121 3 0 chr3 97392129 97392433 -130132145 + AluSq SINE Alu 1 305 0 344 22 22 0 chr3 97392842 97392887 -130131691 + (TC)n Simple_repeat Simple_repeat 1 46 0 42 95 0 0 chr3 97393134 97393260 -130131318 + AT_rich Low_complexity Low_complexity 1 126 0 21 36 0 0 chr3 97393942 97393970 -130130608 + AT_rich Low_complexity Low_complexity 1 28 0 219 284 0 0 chr3 97396333 97396400 -130128178 + GA-rich Low_complexity Low_complexity 1 67 0 1031 260 24 9 chr3 97396412 97396716 -130127862 - MLT1E LTR MaLR 0 593 346 500 254 27 0 chr3 97396746 97396856 -130127722 + MLT1E LTR MaLR 409 521 -72 438 319 7 0 chr3 97397031 97397172 -130127406 - L2 LINE L2 -738 2576 2435 2855 178 48 9 chr3 97397453 97398033 -130126545 - LTR26 LTR ERV1 0 603 1 209 333 108 62 chr3 97398928 97399252 -130125326 - L2 LINE L2 -1138 2176 1838 32 57 0 0 chr3 97400173 97400226 -130124352 + AT_rich Low_complexity Low_complexity 1 53 0 41 78 0 0 chr3 97401591 97401681 -130122897 + AT_rich Low_complexity Low_complexity 1 90 0 21 71 0 0 chr3 97402074 97402116 -130122462 + AT_rich Low_complexity Low_complexity 1 42 0 22 70 0 0 chr3 97403090 97403133 -130121445 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr3 97403334 97403362 -130121216 + AT_rich Low_complexity Low_complexity 1 28 0 1973 141 0 0 chr3 97403827 97404150 -130120428 + AluSx SINE Alu 1 323 0 273 29 0 0 chr3 97405402 97405436 -130119142 + (GA)n Simple_repeat Simple_repeat 1 34 0 1353 202 169 3 chr3 97405454 97405791 -130118787 - MLT2C2 LTR ERVL -71 393 1 591 152 9 36 chr3 97405791 97405903 -130118675 - ERVL-C2 LTR ERVL -8 5756 5648 699 156 0 71 chr3 97406004 97406145 -130118433 - ERVL-C2 LTR ERVL -395 5369 5239 375 183 16 0 chr3 97406156 97406244 -130118334 + MLT2C1 LTR ERVL 231 300 -97 370 164 110 0 chr3 97406258 97406331 -130118247 + MLT2D LTR ERVL 8 88 -326 4355 191 42 35 chr3 97406392 97407337 -130117241 - ERVL LTR ERVL -175 5589 4638 2330 93 6 0 chr3 97407340 97407651 -130116927 + AluSq SINE Alu 1 313 0 3283 245 15 3 chr3 97407699 97408574 -130116004 - ERVL LTR ERVL -1806 3958 3036 2329 78 0 3 chr3 97408584 97408878 -130115700 - AluSg SINE Alu -12 298 6 1271 234 67 11 chr3 97408883 97409259 -130115319 + MLT1B-int LTR MaLR 313 709 -662 2318 11 0 0 chr3 97409621 97409888 -130114690 + L1HS LINE L1 5889 6155 0 207 69 0 0 chr3 97409892 97409921 -130114657 + (A)n Simple_repeat Simple_repeat 1 29 0 1648 238 22 6 chr3 97409923 97410284 -130114294 + MLT1B-int LTR MaLR 1003 1369 -2 1524 187 130 6 chr3 97410318 97410649 -130113929 - MSTD LTR MaLR -12 384 13 363 155 0 0 chr3 97410649 97410707 -130113871 - MSTD LTR MaLR -338 58 1 1483 203 15 90 chr3 97410707 97411106 -130113472 + MLT1B LTR MaLR 22 390 0 27 0 0 0 chr3 97411130 97411157 -130113421 + AT_rich Low_complexity Low_complexity 1 27 0 22 70 0 0 chr3 97411347 97411390 -130113188 + AT_rich Low_complexity Low_complexity 1 43 0 342 0 0 0 chr3 97412422 97412460 -130112118 + (TG)n Simple_repeat Simple_repeat 1 38 0 1936 219 40 38 chr3 97412845 97413324 -130111254 - MLT2B3 LTR ERVL 0 554 75 486 103 0 0 chr3 97413423 97413491 -130111087 - MLT2B3 LTR ERVL -486 68 1 22 0 0 0 chr3 97414030 97414052 -130110526 + AT_rich Low_complexity Low_complexity 1 22 0 246 323 0 0 chr3 97414284 97414349 -130110229 + L2 LINE L2 3196 3260 -12 260 299 49 87 chr3 97415366 97415550 -130109028 + L1MEd LINE L1 863 1039 -5377 406 310 65 75 chr3 97415567 97416045 -130108533 + L1MEd LINE L1 856 1328 -5098 497 266 49 43 chr3 97416365 97416549 -130108029 - MLT1F LTR MaLR -2 540 356 397 278 95 30 chr3 97417003 97417266 -130107312 + L1ME3A LINE L1 5683 5962 -208 2169 97 7 0 chr3 97417675 97417965 -130106613 + AluSp SINE Alu 3 294 -19 256 149 15 15 chr3 97418142 97418209 -130106369 + CT-rich Low_complexity Low_complexity 1 67 0 243 88 0 0 chr3 97420301 97420335 -130104243 + (CAATT)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr3 97421268 97421292 -130103286 + AT_rich Low_complexity Low_complexity 1 24 0 35 41 0 0 chr3 97422550 97422599 -130101979 + AT_rich Low_complexity Low_complexity 1 49 0 180 292 31 15 chr3 97422635 97422700 -130101878 + L2 LINE L2 3248 3313 0 255 348 74 7 chr3 97422713 97422848 -130101730 + MIR SINE MIR 49 192 -70 1746 192 52 41 chr3 97422949 97423408 -130101170 - L1MA4 LINE L1 0 6300 5837 490 123 0 0 chr3 97423406 97423479 -130101099 + L1M1 LINE L1 5573 5645 -655 * 6937 55 0 0 chr3 97423551 97424794 -130099784 - L1PA5 LINE L1 -7 6147 4894 5392 71 0 0 chr3 97424794 97425502 -130099076 + L1PA5 LINE L1 4195 4902 -1244 1925 154 0 7 chr3 97425505 97425804 -130098774 - AluSx SINE Alu -15 297 1 358 292 33 8 chr3 97426299 97426419 -130098159 - MER94 DNA DNA 0 134 12 259 257 14 14 chr3 97426876 97426946 -130097632 + CT-rich Low_complexity Low_complexity 1 70 0 499 158 58 6 chr3 97427047 97427218 -130097360 + (TA)n Simple_repeat Simple_repeat 1 180 0 445 80 98 6 chr3 97427243 97427406 -130097172 + (TA)n Simple_repeat Simple_repeat 2 179 0 387 77 38 77 chr3 97427413 97427596 -130096982 + (CATATA)n Simple_repeat Simple_repeat 3 178 0 389 124 99 0 chr3 97427598 97427759 -130096819 + (TA)n Simple_repeat Simple_repeat 2 178 0 288 76 81 41 chr3 97427807 97427979 -130096599 + (TA)n Simple_repeat Simple_repeat 2 180 0 3355 176 16 5 chr3 97427988 97428613 -130095965 + Tigger1 DNA MER2_type 1787 2418 0 231 114 0 0 chr3 97428889 97428924 -130095654 + (CA)n Simple_repeat Simple_repeat 2 36 0 218 239 14 0 chr3 97428993 97429064 -130095514 + (TA)n Simple_repeat Simple_repeat 1 72 0 26 0 0 0 chr3 97430363 97430389 -130094189 + AT_rich Low_complexity Low_complexity 1 26 0 463 307 40 28 chr3 97430715 97430891 -130093687 + L2 LINE L2 1468 1645 -1669 211 350 226 0 chr3 97430913 97431099 -130093479 - L2 LINE L2 -2188 1126 899 3637 189 64 5 chr3 97431128 97432293 -130092285 - L1M1 LINE L1 -565 5735 4507 1426 250 29 5 chr3 97432292 97432704 -130091874 + L1MA4 LINE L1 5872 6293 -7 * 1007 281 48 55 chr3 97432728 97434138 -130090440 + L1MC3 LINE L1 1222 2828 -3598 2452 253 88 20 chr3 97434161 97435919 -130088659 + L1MC3 LINE L1 4436 5681 -745 1862 225 52 2 chr3 97435888 97436364 -130088214 + L1MC3 LINE L1 7467 7966 -99 * 207 309 18 0 chr3 97436534 97436589 -130087989 + L2 LINE L2 3213 3268 -4 538 281 101 68 chr3 97438107 97438563 -130086015 + L1MCa LINE L1 3826 4296 -2130 1726 157 63 33 chr3 97438902 97439266 -130085312 + THE1C LTR MaLR 1 375 0 704 203 0 0 chr3 97439277 97439288 -130085290 - AluJb SINE Alu -179 133 123 237 65 0 0 chr3 97439288 97439319 -130085259 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 704 203 0 0 chr3 97439319 97439440 -130085138 - AluJb SINE Alu -188 124 1 180 179 0 0 chr3 97439587 97439626 -130084952 + (TATG)n Simple_repeat Simple_repeat 4 42 0 226 146 24 0 chr3 97439642 97439683 -130084895 + GA-rich Low_complexity Low_complexity 2 43 0 570 289 70 16 chr3 97440313 97440500 -130084078 - MIR SINE MIR -64 198 2 252 86 0 0 chr3 97442078 97442113 -130082465 + (TA)n Simple_repeat Simple_repeat 1 35 0 70 41 0 0 chr3 97442194 97442292 -130082286 + AT_rich Low_complexity Low_complexity 1 98 0 419 289 145 26 chr3 97442307 97443152 -130081426 + L1ME LINE L1 607 1531 -4549 2485 271 140 29 chr3 97443447 97443938 -130080640 + L1M4 LINE L1 2889 3324 -2822 2637 170 66 11 chr3 97443938 97444480 -130080098 + L1PB3 LINE L1 5583 6154 0 2485 271 140 29 chr3 97444480 97445771 -130078807 + L1M4 LINE L1 3324 4869 -1277 2256 179 25 51 chr3 97445766 97445787 -130078791 - L1M2 LINE L1 -548 5743 5723 * 2088 136 28 6 chr3 97445787 97446140 -130078438 - THE1B LTR MaLR 0 364 4 2256 179 25 51 chr3 97446140 97446949 -130077629 - L1M2 LINE L1 -568 5723 4938 631 156 8 0 chr3 97446952 97447074 -130077504 + L1MA7 LINE L1 6163 6285 -6 200 347 133 27 chr3 97447378 97447528 -130077050 + MIR SINE MIR 46 211 -51 2038 146 39 17 chr3 97447835 97448191 -130076387 - THE1B LTR MaLR 0 364 1 23 33 0 0 chr3 97448208 97448238 -130076340 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr3 97448414 97448440 -130076138 + AT_rich Low_complexity Low_complexity 1 26 0 32 75 0 0 chr3 97448512 97448579 -130075999 + AT_rich Low_complexity Low_complexity 1 67 0 21 0 0 0 chr3 97448924 97448945 -130075633 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 97449224 97449245 -130075333 + AT_rich Low_complexity Low_complexity 1 21 0 22 80 0 0 chr3 97449556 97449606 -130074972 + AT_rich Low_complexity Low_complexity 1 50 0 304 338 29 15 chr3 97450265 97450401 -130074177 - MIR SINE MIR -113 149 12 3657 196 114 115 chr3 97450811 97452563 -130072015 + MER52A LTR ERV1 1 1750 -5 195 184 0 0 chr3 97453524 97453562 -130071016 + (TA)n Simple_repeat Simple_repeat 2 39 0 232 263 25 25 chr3 97453616 97453696 -130070882 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 23 54 0 0 chr3 97453763 97453800 -130070778 + AT_rich Low_complexity Low_complexity 1 37 0 361 289 28 63 chr3 97454063 97454347 -130070231 - L1MEc LINE L1 -4821 1563 1290 233 306 101 29 chr3 97454387 97454734 -130069844 - L1MEc LINE L1 -5217 1346 975 289 399 19 11 chr3 97454973 97455234 -130069344 - L1MEc LINE L1 -6027 536 274 818 185 71 119 chr3 97455322 97455717 -130068861 - L1ME LINE L1 -3110 2970 2595 835 297 62 46 chr3 97455717 97456693 -130067885 - L1ME LINE L1 -4691 1570 543 22 0 0 0 chr3 97457756 97457778 -130066800 + AT_rich Low_complexity Low_complexity 1 22 0 2133 108 13 10 chr3 97457992 97458299 -130066279 + AluSq SINE Alu 1 308 -5 4387 154 28 51 chr3 97458480 97459400 -130065178 - Tigger3b DNA MER2_type 0 1231 333 811 232 63 10 chr3 97459419 97459626 -130064952 - AluJb SINE Alu -8 304 87 1461 221 27 3 chr3 97459629 97459959 -130064619 - Tigger3b DNA MER2_type -893 338 1 25 0 0 0 chr3 97462213 97462238 -130062340 + AT_rich Low_complexity Low_complexity 1 25 0 649 315 42 51 chr3 97462889 97463044 -130061534 - L2 LINE L2 -453 2861 2706 2412 59 0 7 chr3 97463044 97463348 -130061230 - AluY SINE Alu -9 302 1 649 315 42 51 chr3 97463348 97463525 -130061053 - L2 LINE L2 -608 2706 2532 724 228 41 32 chr3 97463525 97463744 -130060834 + L1M4 LINE L1 3879 4099 -2047 493 120 0 0 chr3 97463777 97463852 -130060726 + L1MB7 LINE L1 6045 6119 -65 633 174 0 35 chr3 97463858 97464002 -130060576 + L1MB7 LINE L1 6045 6183 -1 330 279 62 16 chr3 97464006 97464135 -130060443 - L2 LINE L2 -803 2511 2377 294 141 14 42 chr3 97464265 97464336 -130060242 - L1MB7 LINE L1 -19 6165 6097 12416 169 43 17 chr3 97464336 97465883 -130058695 - Tigger1 DNA MER2_type 0 2418 789 5737 38 0 0 chr3 97465883 97466571 -130058007 - L1PA4 LINE L1 0 6155 5468 12416 169 43 17 chr3 97466571 97467360 -130057218 - Tigger1 DNA MER2_type -1629 789 22 3217 227 46 12 chr3 97467364 97468285 -130056293 - L1MB7 LINE L1 -84 6100 5139 404 332 106 19 chr3 97468432 97468697 -130055881 - L2 LINE L2 -1103 2211 1924 23 33 0 0 chr3 97469145 97469175 -130055403 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 97469700 97469722 -130054856 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 97470501 97470522 -130054056 + AT_rich Low_complexity Low_complexity 1 21 0 240 408 0 0 chr3 97470727 97470847 -130053731 - MIR SINE MIR -137 125 6 253 276 57 9 chr3 97471378 97471483 -130053095 - MLT1J2 LTR MaLR -272 178 69 2430 193 23 68 chr3 97471945 97472607 -130051971 + L1MA10 LINE L1 5701 6332 -2 24 32 0 0 chr3 97472773 97472804 -130051774 + AT_rich Low_complexity Low_complexity 1 31 0 342 115 0 0 chr3 97473240 97473292 -130051286 + (TCTA)n Simple_repeat Simple_repeat 2 53 0 240 354 36 0 chr3 97474376 97474496 -130050082 - MIR SINE MIR -39 169 45 209 290 60 40 chr3 97474727 97474827 -130049751 + MIR SINE MIR 102 203 -59 29 0 0 0 chr3 97475443 97475472 -130049106 + AT_rich Low_complexity Low_complexity 1 29 0 276 131 33 0 chr3 97476597 97476658 -130047920 - L1MB8 LINE L1 -2 6176 6114 186 103 0 0 chr3 97476663 97476692 -130047886 + (TA)n Simple_repeat Simple_repeat 2 30 0 531 250 5 113 chr3 97476708 97476920 -130047658 - L1ME1 LINE L1 -167 6068 5880 875 299 61 8 chr3 97477005 97477400 -130047178 - L1ME1 LINE L1 -2256 3959 3544 473 236 46 23 chr3 97477496 97477712 -130046866 - L1ME1 LINE L1 -4151 2245 2025 464 262 73 46 chr3 97478222 97478524 -130046054 - HsTC2 DNA Tc2 -116 1782 1297 21 0 0 0 chr3 97478585 97478606 -130045972 + AT_rich Low_complexity Low_complexity 1 21 0 292 246 18 88 chr3 97478638 97478752 -130045826 - L2 LINE L2 -8 3305 3200 21 36 0 0 chr3 97478974 97479002 -130045576 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr3 97479892 97479924 -130044654 + AT_rich Low_complexity Low_complexity 1 32 0 3632 38 0 2 chr3 97481245 97481690 -130042888 + L1PA5 LINE L1 5708 6151 -3 1569 189 154 9 chr3 97481727 97482077 -130042501 - MSTA LTR MaLR 0 428 28 225 152 87 0 chr3 97482100 97482146 -130042432 - MSTA LTR MaLR -376 52 3 6204 27 8 0 chr3 97483015 97483759 -130040819 - L1PA4 LINE L1 -1 6154 5405 27 62 0 0 chr3 97485029 97485077 -130039501 + AT_rich Low_complexity Low_complexity 1 48 0 279 111 95 32 chr3 97486403 97486466 -130038112 + MLT1A1 LTR MaLR 1 67 -298 * 1027 199 0 5 chr3 97486455 97486641 -130037937 + MLT1A1 LTR MaLR 179 363 -2 2028 74 15 71 chr3 97487333 97487657 -130036921 - AluSx SINE Alu -6 306 1 35 54 0 0 chr3 97487731 97487787 -130036791 + AT_rich Low_complexity Low_complexity 1 56 0 25 51 0 0 chr3 97487972 97488011 -130036567 + AT_rich Low_complexity Low_complexity 1 39 0 228 135 0 0 chr3 97488615 97488652 -130035926 + (TG)n Simple_repeat Simple_repeat 2 38 0 2003 75 0 0 chr3 97488671 97488925 -130035653 - AluY SINE Alu -8 303 50 203 306 75 58 chr3 97490507 97490680 -130033898 + L2 LINE L2 3081 3256 -57 271 335 190 10 chr3 97491943 97492137 -130032441 - L2 LINE L2 -252 3061 2832 328 263 100 88 chr3 97492137 97492456 -130032122 - MER5C DNA MER1_type -1 323 1 189 107 0 0 chr3 97492480 97492508 -130032070 + (T)n Simple_repeat Simple_repeat 1 28 0 863 328 69 20 chr3 97492508 97492913 -130031665 - L2 LINE L2 -540 2774 2350 1337 268 84 31 chr3 97492928 97493365 -130031213 - MLT1E LTR MaLR -2 591 115 183 42 0 0 chr3 97493365 97493389 -130031189 + (CATAA)n Simple_repeat Simple_repeat 2 25 0 1337 268 84 31 chr3 97493389 97493511 -130031067 - MLT1E LTR MaLR -478 115 1 328 330 11 0 chr3 97493513 97493607 -130030971 - L2 LINE L2 -987 2327 2233 1744 227 10 94 chr3 97493863 97494440 -130030138 + LTR8 LTR ERV1 1 529 -162 4384 84 2 0 chr3 97494440 97495024 -130029554 + L1PA13 LINE L1 5551 6135 -28 844 224 18 12 chr3 97495094 97495264 -130029314 + LTR8 LTR ERV1 521 691 0 455 318 26 34 chr3 97495264 97495491 -130029087 + LTR33 LTR ERVL 297 521 0 333 298 121 21 chr3 97496250 97496391 -130028187 + MIR SINE MIR 93 247 -15 29 70 0 0 chr3 97498054 97498111 -130026467 + AT_rich Low_complexity Low_complexity 1 57 0 33 0 0 0 chr3 97498309 97498342 -130026236 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr3 97499696 97499718 -130024860 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 97500543 97500571 -130024007 + AT_rich Low_complexity Low_complexity 1 28 0 31 26 0 0 chr3 97500655 97500693 -130023885 + AT_rich Low_complexity Low_complexity 1 38 0 262 389 112 16 chr3 97501410 97501731 -130022847 - L2 LINE L2 -2626 688 337 358 96 0 0 chr3 97502834 97502886 -130021692 - L1PA15 LINE L1 -222 5943 5892 261 0 0 0 chr3 97503963 97503992 -130020586 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 2609 150 5 2 chr3 97504012 97504439 -130020139 - L1PA16 LINE L1 -9 6157 5730 12049 198 18 38 chr3 97504441 97506301 -130018277 + L1M1 LINE L1 2511 4282 -2023 628 139 90 0 chr3 97506301 97506423 -130018155 + L1MA3 LINE L1 6162 6294 -11 12049 198 18 38 chr3 97506423 97507728 -130016850 + L1M1 LINE L1 4282 5612 -693 3788 165 25 28 chr3 97507836 97508633 -130015945 + L1MA2 LINE L1 5190 5984 -321 2176 80 13 0 chr3 97508622 97508923 -130015655 - L1PA7 LINE L1 -1670 4476 4172 * 6548 79 9 2 chr3 97508923 97510609 -130013969 + L1PA7 LINE L1 4462 6153 -1 1700 143 6 56 chr3 97510613 97510970 -130013608 + L1MA2 LINE L1 5966 6304 0 649 176 32 0 chr3 97510974 97511099 -130013479 - L1P4 LINE L1 -575 5591 5463 222 177 0 32 chr3 97511099 97511161 -130013417 + (TAA)n Simple_repeat Simple_repeat 2 61 0 1855 185 15 61 chr3 97511668 97512128 -130012450 + L1MB3 LINE L1 5744 6182 -1 261 83 0 0 chr3 97512808 97512844 -130011734 + (TG)n Simple_repeat Simple_repeat 1 36 0 239 114 23 0 chr3 97513615 97513659 -130010919 + GA-rich Low_complexity Low_complexity 2 46 0 209 161 0 65 chr3 97513664 97513726 -130010852 + A-rich Low_complexity Low_complexity 4 61 0 33 0 0 0 chr3 97514270 97514303 -130010275 + AT_rich Low_complexity Low_complexity 1 33 0 310 350 29 43 chr3 97514865 97515142 -130009436 - L2 LINE L2 -905 2409 2137 254 276 92 31 chr3 97516504 97516667 -130007911 - MER31B LTR ERV1 -21 445 273 504 224 68 14 chr3 97516704 97516851 -130007727 - MER31B LTR ERV1 -311 155 1 293 339 58 8 chr3 97517717 97517838 -130006740 - L2 LINE L2 -1 3271 3145 270 0 0 0 chr3 97517913 97517943 -130006635 + (TG)n Simple_repeat Simple_repeat 2 31 0 214 296 0 0 chr3 97518239 97518293 -130006285 - MER5A DNA MER1_type -8 181 128 382 339 68 0 chr3 97518320 97518438 -130006140 - MER5A DNA MER1_type -57 132 7 840 310 70 42 chr3 97519085 97519802 -130004776 - L1MC4 LINE L1 -144 7898 7162 21 57 0 0 chr3 97519802 97519837 -130004741 + AT_rich Low_complexity Low_complexity 1 35 0 300 374 51 23 chr3 97520186 97520400 -130004178 - MIR SINE MIR -41 221 2 180 0 0 0 chr3 97521609 97521629 -130002949 + (A)n Simple_repeat Simple_repeat 1 20 0 246 333 13 0 chr3 97521679 97521754 -130002824 + MER21B LTR ERV1 235 310 -553 * 284 359 22 0 chr3 97521721 97521813 -130002765 + MER77 LTR ERV1 277 370 -235 1045 313 42 67 chr3 97525032 97525528 -129999050 - MER115 DNA AcHobo -1 692 209 237 347 105 8 chr3 97525654 97525778 -129998800 - MIR SINE MIR -82 180 45 510 100 33 33 chr3 97526183 97526233 -129998345 + MLT2B3 LTR ERVL 465 514 -40 1014 81 35 0 chr3 97526233 97526406 -129998172 + (TATG)n Simple_repeat Simple_repeat 2 180 0 408 40 0 0 chr3 97526405 97526455 -129998123 + (TCTA)n Simple_repeat Simple_repeat 3 52 0 * 510 100 33 33 chr3 97526406 97526494 -129998084 + MLT2B3 LTR ERVL 513 554 0 778 237 39 25 chr3 97526526 97526812 -129997766 + MLT1B LTR MaLR 85 468 -37 26 0 0 0 chr3 97529259 97529285 -129995293 + AT_rich Low_complexity Low_complexity 1 26 0 48 32 0 0 chr3 97529517 97529579 -129994999 + AT_rich Low_complexity Low_complexity 1 62 0 642 294 103 91 chr3 97530974 97531762 -129992816 - ERVL LTR ERVL -1409 4355 3559 486 294 16 0 chr3 97531758 97531884 -129992694 - ERVL LTR ERVL -2293 3361 3234 * 1212 238 57 72 chr3 97531991 97532450 -129992128 - MLT1D LTR MaLR -53 452 1 22 35 0 0 chr3 97532634 97532663 -129991915 + AT_rich Low_complexity Low_complexity 1 29 0 2019 249 67 86 chr3 97533370 97534390 -129990188 - L1MC3 LINE L1 -767 7018 6019 200 246 18 0 chr3 97534645 97534702 -129989876 + (TAAA)n Simple_repeat Simple_repeat 4 61 0 280 253 47 60 chr3 97534937 97535087 -129989491 + MLT1H LTR MaLR 67 214 -335 248 325 26 52 chr3 97535194 97535388 -129989190 + MLT1H LTR MaLR 361 549 0 1227 214 52 11 chr3 97535896 97536202 -129988376 + AluJo SINE Alu 1 317 0 498 208 10 10 chr3 97536608 97536709 -129987869 + Tigger3b DNA MER2_type 2 102 -1129 4918 151 23 35 chr3 97536721 97537672 -129986906 + Tigger3b DNA MER2_type 289 1228 -3 198 103 0 0 chr3 97537847 97537876 -129986702 + (TA)n Simple_repeat Simple_repeat 2 30 0 32 26 0 0 chr3 97538231 97538270 -129986308 + AT_rich Low_complexity Low_complexity 1 39 0 28 61 0 0 chr3 97538323 97538372 -129986206 + AT_rich Low_complexity Low_complexity 1 49 0 1344 251 112 26 chr3 97538552 97539007 -129985571 + MLT1D LTR MaLR 6 499 -6 356 314 90 32 chr3 97539713 97539869 -129984709 + MIR SINE MIR 64 228 -34 8391 189 37 21 chr3 97540290 97540565 -129984013 + L1PA16 LINE L1 3218 3487 -2679 228 35 0 0 chr3 97540565 97540594 -129983984 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 8391 189 37 21 chr3 97540594 97543231 -129981347 + L1PA16 LINE L1 3487 6166 0 354 312 0 24 chr3 97544202 97544327 -129980251 + CT-rich Low_complexity Low_complexity 4 125 0 29 28 0 0 chr3 97545647 97545683 -129978895 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 97545908 97545929 -129978649 + AT_rich Low_complexity Low_complexity 1 21 0 1569 178 72 0 chr3 97546504 97546808 -129977770 - MER52A LTR ERV1 0 1755 1430 * 2983 218 27 26 chr3 97546801 97547635 -129976943 - MER52A LTR ERV1 -688 590 26 21 57 0 0 chr3 97548096 97548131 -129976447 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr3 97548398 97548436 -129976142 + AT_rich Low_complexity Low_complexity 1 38 0 659 334 39 18 chr3 97549218 97549556 -129975022 + L2 LINE L2 668 1012 -2302 5097 12 0 0 chr3 97549563 97550143 -129974435 - L1HS LINE L1 0 6155 5576 * 7401 17 0 1 chr3 97550142 97551156 -129973422 + L1P1 LINE L1 4528 5540 -615 464 301 121 10 chr3 97551156 97551362 -129973216 + L2 LINE L2 1025 1253 -2061 2306 179 10 2 chr3 97551386 97551795 -129972783 + MER4D LTR ERV1 1 412 -460 1103 157 6 0 chr3 97551786 97551964 -129972614 + MER4D LTR ERV1 694 872 0 * 255 344 72 12 chr3 97552622 97552942 -129971636 - HAL1 LINE L1 -918 1589 1251 640 149 0 0 chr3 97554315 97554409 -129970169 + AluSg/x SINE Alu 195 288 -24 197 119 24 0 chr3 97554409 97554451 -129970127 + (TA)n Simple_repeat Simple_repeat 2 44 0 23 33 0 0 chr3 97554467 97554497 -129970081 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 97554596 97554618 -129969960 + AT_rich Low_complexity Low_complexity 1 22 0 377 297 58 32 chr3 97555417 97555572 -129969006 + MIR SINE MIR 9 167 -95 36 77 0 0 chr3 97555797 97555875 -129968703 + AT_rich Low_complexity Low_complexity 1 78 0 247 259 0 0 chr3 97557893 97557947 -129966631 - L2 LINE L2 -622 2692 2639 27 0 0 0 chr3 97558099 97558126 -129966452 + AT_rich Low_complexity Low_complexity 1 27 0 271 351 47 14 chr3 97558516 97558727 -129965851 + L1M4 LINE L1 3921 4138 -2008 324 292 9 65 chr3 97558794 97559010 -129965568 + L1M4 LINE L1 4583 4786 -1360 984 253 122 47 chr3 97559011 97559544 -129965034 + L1ME3A LINE L1 1075 1647 -4737 829 298 54 42 chr3 97559639 97560166 -129964412 + L1ME3A LINE L1 5509 6047 -359 2492 201 38 9 chr3 97560166 97560699 -129963879 - MER44D DNA MER2_type -1 604 2 829 298 54 42 chr3 97560699 97560822 -129963756 + L1ME3A LINE L1 6047 6167 -239 585 342 87 14 chr3 97561029 97561374 -129963204 - L2 LINE L2 -708 2606 2237 511 330 118 32 chr3 97561413 97561884 -129962694 - L1MEc LINE L1 -5453 943 514 359 73 18 0 chr3 97561884 97561939 -129962639 + (CA)n Simple_repeat Simple_repeat 1 56 0 511 330 118 32 chr3 97561939 97562289 -129962289 - L1MEc LINE L1 -5882 514 51 188 236 36 36 chr3 97563238 97563293 -129961285 + L2 LINE L2 3216 3270 -2 512 291 96 25 chr3 97564285 97564691 -129959887 - L1M4 LINE L1 -1603 4543 4109 407 235 39 46 chr3 97565101 97565254 -129959324 - MLT2F LTR ERVL -277 386 235 338 269 32 32 chr3 97565256 97565349 -129959229 - MLT2F LTR ERVL -382 281 189 220 204 0 0 chr3 97566077 97566121 -129958457 + (TG)n Simple_repeat Simple_repeat 2 45 0 501 283 43 11 chr3 97566170 97566357 -129958221 + MLT1I LTR MaLR 5 197 -212 1431 223 94 25 chr3 97566487 97566693 -129957885 - MSTB LTR MaLR -1 425 235 1355 55 0 11 chr3 97566693 97566875 -129957703 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 1431 223 94 25 chr3 97566875 97567063 -129957515 - MSTB LTR MaLR -191 235 4 251 185 0 56 chr3 97567145 97567199 -129957379 + AluSg/x SINE Alu 120 170 -132 2151 114 3 3 chr3 97567911 97568218 -129956360 - AluSp SINE Alu -4 309 3 609 282 89 53 chr3 97568521 97568901 -129955677 - LTR68 LTR ERV1 -346 394 1 3114 228 38 84 chr3 97569053 97570201 -129954377 - L1MD2 LINE L1 -65 6294 5213 6257 93 10 3 chr3 97570383 97573562 -129951016 - L1PA7 LINE L1 0 6154 2774 3613 235 83 37 chr3 97573663 97574920 -129949658 + MER57-int LTR ERV1 4717 6030 -301 679 279 12 30 chr3 97574920 97575097 -129949481 + MER57-int LTR ERV1 6812 6991 -825 1468 149 0 98 chr3 97575097 97575433 -129949145 + AluSx SINE Alu 10 312 0 679 279 12 30 chr3 97575433 97575600 -129948978 + MER57-int LTR ERV1 6991 7325 -491 588 251 38 13 chr3 97575617 97575938 -129948640 + MER93b LTR ERV1 5 362 -11 222 226 39 10 chr3 97576700 97576802 -129947776 + (TA)n Simple_repeat Simple_repeat 1 105 0 21 0 0 0 chr3 97576802 97576823 -129947755 + AT_rich Low_complexity Low_complexity 1 21 0 498 177 19 177 chr3 97576934 97577143 -129947435 + MER5A DNA MER1_type 12 187 -2 1748 167 13 35 chr3 97578632 97578944 -129945634 + AluJo SINE Alu 4 308 -4 1370 127 0 0 chr3 97578960 97579172 -129945406 + L1PA7 LINE L1 4615 4826 -1320 6617 76 8 0 chr3 97579272 97580424 -129944154 + L1PA7 LINE L1 4997 6154 0 315 0 0 0 chr3 97580461 97580496 -129944082 + (TG)n Simple_repeat Simple_repeat 1 35 0 2168 142 19 25 chr3 97580610 97580976 -129943602 - THE1B LTR MaLR 0 364 1 8184 128 8 7 chr3 97580976 97582188 -129942390 - THE1B-int LTR MaLR 0 1580 367 2181 176 29 17 chr3 97582213 97582930 -129941648 - L1P4 LINE L1 -388 5777 4970 252 0 0 0 chr3 97583349 97583377 -129941201 + (CA)n Simple_repeat Simple_repeat 1 28 0 1608 264 55 49 chr3 97585154 97586017 -129938561 + L1MDa LINE L1 1344 2211 -4329 1432 299 35 10 chr3 97586055 97586651 -129937927 + L1MDa LINE L1 2572 3182 -3358 1085 140 11 17 chr3 97587144 97587322 -129937256 + AluSx SINE Alu 3 179 -133 1326 103 0 0 chr3 97587464 97587649 -129936929 + L1PA13 LINE L1 5958 6142 -21 243 0 0 0 chr3 97587656 97587683 -129936895 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr3 97587697 97587720 -129936858 + AT_rich Low_complexity Low_complexity 1 23 0 302 279 171 36 chr3 97588165 97588416 -129936162 - L1MC5 LINE L1 -197 7764 7480 2151 132 0 0 chr3 97588427 97588730 -129935848 - AluSg SINE Alu -7 303 1 1164 44 0 0 chr3 97588730 97588865 -129935713 - AluSq/x SINE Alu -177 135 1 21 57 0 0 chr3 97589114 97589149 -129935429 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 97589946 97589969 -129934609 + AT_rich Low_complexity Low_complexity 1 23 0 506 43 0 14 chr3 97590802 97590872 -129933706 + (TAGA)n Simple_repeat Simple_repeat 2 70 0 213 139 28 0 chr3 97590899 97590935 -129933643 + (CATATA)n Simple_repeat Simple_repeat 4 40 0 22 35 0 0 chr3 97590987 97591016 -129933562 + AT_rich Low_complexity Low_complexity 1 29 0 35 24 0 0 chr3 97592816 97592858 -129931720 + AT_rich Low_complexity Low_complexity 1 42 0 26623 109 14 6 chr3 97593299 97598200 -129926378 - L1PA7 LINE L1 -4 6150 1219 27 49 0 0 chr3 97599044 97599085 -129925493 + AT_rich Low_complexity Low_complexity 1 41 0 1476 104 35 0 chr3 97599932 97600134 -129924444 + AluSq SINE Alu 22 230 -83 236 247 22 0 chr3 97600802 97600891 -129923687 + L1MC4 LINE L1 6612 6702 -1340 231 174 0 0 chr3 97600908 97600954 -129923624 - LTR66 LTR ERVL -171 439 394 40 21 0 0 chr3 97601518 97601565 -129923013 + AT_rich Low_complexity Low_complexity 1 47 0 1913 196 89 13 chr3 97601578 97602027 -129922551 - MER31A LTR ERV1 -2 483 1 1950 101 66 3 chr3 97602066 97602353 -129922225 - AluSq SINE Alu -7 306 2 6011 46 0 24 chr3 97603943 97604783 -129919795 - L1PA4 LINE L1 -2 6153 5370 1205 116 0 90 chr3 97604780 97605048 -129919530 + L1PA4 LINE L1 5145 5388 -758 * 5378 31 0 0 chr3 97605217 97605853 -129918725 - L1PA4 LINE L1 -150 6005 5370 1671 49 0 87 chr3 97605850 97606116 -129918462 + L1PA4 LINE L1 5145 5387 -759 * 232 250 28 14 chr3 97606342 97606414 -129918164 - MLT1I LTR MaLR 0 409 337 2007 126 67 14 chr3 97607596 97607952 -129916626 - THE1C LTR MaLR 0 375 1 30 45 0 0 chr3 97609199 97609243 -129915335 + AT_rich Low_complexity Low_complexity 1 44 0 1283 156 149 127 chr3 97609515 97609602 -129914976 + MLT1C LTR MaLR 1 85 -382 2093 136 0 16 chr3 97609602 97609919 -129914659 + AluSx SINE Alu 1 312 0 1283 156 149 127 chr3 97609919 97610287 -129914291 + MLT1C LTR MaLR 85 466 -1 1749 175 93 13 chr3 97610399 97610777 -129913801 - MLT2C2 LTR ERVL -48 416 9 430 332 77 13 chr3 97611010 97611245 -129913333 + L1ME LINE L1 5478 5727 -435 207 204 0 0 chr3 97612538 97612582 -129911996 + (TA)n Simple_repeat Simple_repeat 2 45 0 289 239 30 15 chr3 97612839 97612906 -129911672 + MER77 LTR ERV1 310 377 -228 26 0 0 0 chr3 97613295 97613321 -129911257 + AT_rich Low_complexity Low_complexity 1 26 0 790 137 18 219 chr3 97613325 97613653 -129910925 - MLT1B LTR MaLR 0 390 129 22 35 0 0 chr3 97614093 97614122 -129910456 + AT_rich Low_complexity Low_complexity 1 29 0 590 279 138 24 chr3 97614740 97615336 -129909242 + L1M4 LINE L1 2161 2824 -3322 42 0 0 0 chr3 97615354 97615396 -129909182 + AT_rich Low_complexity Low_complexity 1 42 0 448 300 34 51 chr3 97615410 97615940 -129908638 + L1M4 LINE L1 2795 3315 -2831 1584 236 67 8 chr3 97616146 97616536 -129908042 + MSTB LTR MaLR 10 422 -4 556 144 41 0 chr3 97616688 97616785 -129907793 + MSTB LTR MaLR 314 414 -12 206 57 57 0 chr3 97616785 97616820 -129907758 + A-rich Low_complexity Low_complexity 6 42 0 34 42 0 0 chr3 97616910 97616958 -129907620 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr3 97617314 97617338 -129907240 + AT_rich Low_complexity Low_complexity 1 24 0 2800 236 29 5 chr3 97617699 97618331 -129906247 - MER82 DNA MER2_type 0 653 7 26 64 0 0 chr3 97618390 97618437 -129906141 + AT_rich Low_complexity Low_complexity 1 47 0 284 98 78 0 chr3 97619299 97619350 -129905228 - MLT2A2 LTR ERVL 0 453 399 340 291 0 0 chr3 97619350 97619436 -129905142 + L1MC4 LINE L1 6617 6702 -1340 1981 178 38 30 chr3 97619441 97619944 -129904634 - MLT2A2 LTR ERVL -44 510 1 26 0 0 0 chr3 97620238 97620264 -129904314 + AT_rich Low_complexity Low_complexity 1 26 0 328 261 0 34 chr3 97620972 97621091 -129903487 + L1MCa LINE L1 1950 2064 -4362 1602 266 33 73 chr3 97621094 97621700 -129902878 + MLT1E LTR MaLR 3 584 -9 2721 199 81 16 chr3 97621711 97622592 -129901986 + L1PB4 LINE L1 4710 5719 -437 378 0 0 0 chr3 97622592 97622634 -129901944 + (TA)n Simple_repeat Simple_repeat 2 43 0 2721 199 81 16 chr3 97622634 97623100 -129901478 + L1PB4 LINE L1 5719 6153 -3 1052 273 88 40 chr3 97623102 97623524 -129901054 + ERVL LTR ERVL 4914 5355 -409 23 0 0 0 chr3 97623924 97623947 -129900631 + AT_rich Low_complexity Low_complexity 1 23 0 4228 168 68 14 chr3 97624028 97624897 -129899681 + Tigger3b DNA MER2_type 1 916 -315 21 0 0 0 chr3 97625307 97625328 -129899250 + AT_rich Low_complexity Low_complexity 1 21 0 1041 295 75 7 chr3 97625849 97626303 -129898275 - L1ME LINE L1 -347 5817 5333 261 180 0 0 chr3 97626459 97626509 -129898069 - L1MB4 LINE L1 -32 6148 6099 3746 172 21 162 chr3 97626523 97627536 -129897042 - L1MA4 LINE L1 -280 6202 5047 243 61 0 0 chr3 97627536 97627569 -129897009 + (CA)n Simple_repeat Simple_repeat 2 34 0 3746 172 21 162 chr3 97627569 97627859 -129896719 - L1MA4 LINE L1 -1435 5047 5090 772 252 0 0 chr3 97627859 97628018 -129896560 + FRAM SINE Alu 5 163 -13 3746 172 21 162 chr3 97628018 97628541 -129896037 - L1MA4 LINE L1 -1391 5091 4496 * 5037 164 42 16 chr3 97628540 97629743 -129894835 - L1PA16 LINE L1 -3 6163 4924 7712 222 35 38 chr3 97629749 97634205 -129890373 - L1MA4 LINE L1 -1917 4411 3 1909 129 3 0 chr3 97634328 97634622 -129889956 - L1PA13 LINE L1 -7 6156 5862 2737 116 5 0 chr3 97634627 97635032 -129889546 + L1PA13 LINE L1 5452 5858 -310 414 293 80 16 chr3 97635165 97635540 -129889038 - L1M4 LINE L1 -3111 3035 2637 718 237 0 9 chr3 97635585 97635792 -129888786 + L1 LINE L1 2126 2323 -3823 181 234 43 0 chr3 97635807 97635854 -129888724 - MIR SINE MIR -94 168 120 641 268 13 100 chr3 97635898 97636013 -129888565 - MLT2C1 LTR ERVL -124 273 150 6034 72 14 24 chr3 97636013 97636269 -129888309 - L1PA7 LINE L1 -6 6148 5891 2263 110 3 0 chr3 97636269 97636577 -129888001 - AluSg SINE Alu -1 309 1 6034 72 14 24 chr3 97636577 97637327 -129887251 - L1PA7 LINE L1 -263 5891 5118 641 268 13 100 chr3 97637327 97637510 -129887068 - MLT2C1 LTR ERVL -247 150 1 726 293 74 87 chr3 97637729 97638350 -129886228 - MER21B LTR ERV1 -217 646 34 617 191 90 142 chr3 97638893 97639160 -129885418 + MLT1B LTR MaLR 1 253 -137 1892 223 11 132 chr3 97639227 97639967 -129884611 + MLT1B-int LTR MaLR 5 654 -1081 269 246 15 0 chr3 97639972 97640037 -129884541 + MLT1B-int LTR MaLR 819 884 -487 2134 231 9 9 chr3 97640346 97640788 -129883790 + MLT1B-int LTR MaLR 1294 1735 0 979 249 22 94 chr3 97640788 97641202 -129883376 + MLT1B LTR MaLR 1 384 -6 202 211 46 0 chr3 97641204 97641313 -129883265 + (TA)n Simple_repeat Simple_repeat 1 114 0 22 35 0 0 chr3 97641611 97641640 -129882938 + AT_rich Low_complexity Low_complexity 1 29 0 244 91 0 23 chr3 97641806 97641847 -129882731 - MSTC LTR MaLR 0 428 389 443 101 130 0 chr3 97641847 97641916 -129882662 + THE1B LTR MaLR 1 78 -286 1821 173 7 3 chr3 97642024 97642330 -129882248 + THE1B LTR MaLR 58 364 0 9044 142 36 28 chr3 97642332 97643897 -129880681 + THE1B-int LTR MaLR 3 1580 0 2355 128 17 0 chr3 97643897 97644255 -129880323 + THE1B LTR MaLR 1 364 0 1974 186 20 23 chr3 97644257 97644649 -129879929 - MSTC LTR MaLR -37 391 1 385 236 94 80 chr3 97645450 97645726 -129878852 - LTR68 LTR ERV1 -460 280 1 1595 156 58 46 chr3 97645747 97645858 -129878720 - MER7A DNA MER2_type -2693 345 237 1378 195 23 55 chr3 97645858 97646206 -129878372 - MER1B DNA MER1_type 0 337 1 1595 156 58 46 chr3 97646206 97646422 -129878156 - MER7A DNA MER2_type -2801 237 16 1225 284 165 26 chr3 97648161 97649192 -129875386 - L1M4 LINE L1 -919 5227 4054 1512 260 55 45 chr3 97649302 97649995 -129874583 - L1M4 LINE L1 -1031 5115 4416 489 146 0 0 chr3 97650004 97650093 -129874485 - AluS SINE Alu 0 311 223 255 324 75 50 chr3 97650501 97650779 -129873799 - L1MEc LINE L1 -6032 364 80 891 200 98 102 chr3 97650905 97651491 -129873087 - MER31-int LTR ERV1 -1412 4490 2705 2403 50 0 13 chr3 97653043 97653341 -129871237 + AluY SINE Alu 7 300 -11 34 24 0 0 chr3 97654578 97654619 -129869959 + AT_rich Low_complexity Low_complexity 1 41 0 261 247 78 0 chr3 97656454 97656531 -129868047 - MLT1A1 LTR MaLR -13 582 500 962 239 28 83 chr3 97656765 97657125 -129867453 - MLT1A1 LTR MaLR -16 349 10 190 275 73 110 chr3 97658773 97658882 -129865696 + L2 LINE L2 3168 3272 0 216 86 0 0 chr3 97659437 97659472 -129865106 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 459 327 13 0 chr3 97659600 97659753 -129864825 - MLT1J LTR MaLR -280 231 77 438 200 11 0 chr3 97659921 97660016 -129864562 + MLT2D LTR ERVL 1 96 -318 432 253 62 20 chr3 97660035 97660181 -129864397 - L1MA9 LINE L1 -30 6282 6131 1179 232 21 14 chr3 97660198 97660482 -129864096 + MLT2D LTR ERVL 79 364 -50 222 37 0 0 chr3 97660482 97660509 -129864069 + (TC)n Simple_repeat Simple_repeat 2 28 0 327 25 0 0 chr3 97660512 97660552 -129864026 + (CA)n Simple_repeat Simple_repeat 1 40 0 446 316 131 33 chr3 97661048 97661383 -129863195 - MLT1H LTR MaLR -4 545 178 871 343 42 33 chr3 97663538 97663996 -129860582 + L2 LINE L2 2446 2907 -407 231 36 0 0 chr3 97664169 97664197 -129860381 + (TA)n Simple_repeat Simple_repeat 2 29 0 337 83 0 33 chr3 97664239 97664299 -129860279 + (TA)n Simple_repeat Simple_repeat 1 58 0 2876 182 17 13 chr3 97664307 97664963 -129859615 + L1MC/D LINE L1 4812 5467 -743 1772 143 7 0 chr3 97664995 97665303 -129859275 + AluJb SINE Alu 1 310 0 26 30 0 0 chr3 97668392 97668425 -129856153 + AT_rich Low_complexity Low_complexity 1 33 0 220 382 93 62 chr3 97668783 97669215 -129855363 + L2 LINE L2 2183 2627 -687 27 29 0 0 chr3 97669904 97669938 -129854640 + AT_rich Low_complexity Low_complexity 1 34 0 192 97 0 0 chr3 97670105 97670136 -129854442 + (TCCCC)n Simple_repeat Simple_repeat 5 35 0 307 284 9 89 chr3 97670708 97670933 -129853645 - L1MC/D LINE L1 -2530 5512 5306 1034 315 130 21 chr3 97670956 97671096 -129853482 + MLT2F LTR ERVL 26 149 -514 1560 174 161 16 chr3 97671096 97671469 -129853109 + MSTA LTR MaLR 2 428 0 1034 315 130 21 chr3 97671469 97671804 -129852774 + MLT2F LTR ERVL 149 553 -110 216 179 30 15 chr3 97671838 97671905 -129852673 + (TA)n Simple_repeat Simple_repeat 1 68 0 281 192 0 0 chr3 97671926 97671978 -129852600 + MLT2F LTR ERVL 612 663 0 549 282 41 6 chr3 97672038 97672208 -129852370 - MER5A DNA MER1_type -13 176 1 316 341 93 11 chr3 97672496 97672678 -129851900 - L1MC/D LINE L1 -1318 4828 4632 21 0 0 0 chr3 97672683 97672704 -129851874 + AT_rich Low_complexity Low_complexity 1 21 0 617 211 9 0 chr3 97672730 97672844 -129851734 - AluJb SINE Alu -21 291 177 23 0 0 0 chr3 97673282 97673305 -129851273 + AT_rich Low_complexity Low_complexity 1 23 0 1488 190 10 10 chr3 97674156 97674446 -129850132 + L1P3 LINE L1 3 292 -5583 198 0 0 0 chr3 97674538 97674560 -129850018 + (TTTA)n Simple_repeat Simple_repeat 1 22 0 419 217 0 12 chr3 97675348 97675431 -129849147 - Tigger5 DNA MER2_type 0 2323 2242 348 244 0 13 chr3 97675421 97675499 -129849079 + Tigger5 DNA MER2_type 2242 2318 -5 * 387 250 0 0 chr3 97675498 97675578 -129849000 - Tigger5 DNA MER2_type -2243 80 1 26 0 0 0 chr3 97675620 97675646 -129848932 + AT_rich Low_complexity Low_complexity 1 26 0 4310 255 115 16 chr3 97676347 97678172 -129846406 - L1M4c LINE L1 -4646 2000 13 270 56 0 0 chr3 97678256 97678292 -129846286 + (T)n Simple_repeat Simple_repeat 1 36 0 336 287 83 75 chr3 97678331 97678725 -129845853 - L1MEd LINE L1 -4882 1534 1105 180 0 0 0 chr3 97678992 97679012 -129845566 + (TA)n Simple_repeat Simple_repeat 2 21 0 278 372 39 0 chr3 97679955 97680084 -129844494 + MIR SINE MIR 57 190 -72 201 74 0 0 chr3 97683185 97683212 -129841366 + (T)n Simple_repeat Simple_repeat 1 27 0 29 28 0 0 chr3 97685128 97685164 -129839414 + AT_rich Low_complexity Low_complexity 1 36 0 1789 292 66 32 chr3 97686787 97687725 -129836853 - L1MC/D LINE L1 -1649 4497 3528 863 247 77 59 chr3 97688079 97688199 -129836379 - L1MC/D LINE L1 -2699 3447 3331 1202 212 35 68 chr3 97688199 97688390 -129836188 - AluJo SINE Alu -11 301 122 2364 60 10 0 chr3 97688390 97688688 -129835890 + AluY SINE Alu 1 301 -10 1202 212 35 68 chr3 97688688 97688807 -129835771 - AluJo SINE Alu -190 122 1 863 247 77 59 chr3 97688807 97689254 -129835324 - L1MC/D LINE L1 -2815 3331 2866 2348 115 20 3 chr3 97689254 97689603 -129834975 - THE1A LTR MaLR 0 355 1 863 247 77 59 chr3 97689603 97689629 -129834949 - L1MC/D LINE L1 -3280 2866 2842 2104 187 58 70 chr3 97689878 97690381 -129834197 + MLT2B2 LTR ERVL 19 515 0 24 0 0 0 chr3 97691451 97691475 -129833103 + AT_rich Low_complexity Low_complexity 1 24 0 743 139 21 28 chr3 97692885 97693029 -129831549 - L1MA9 LINE L1 -3 6309 6167 1327 338 79 55 chr3 97693653 97694507 -129830071 - L2 LINE L2 -185 3128 2296 216 97 0 0 chr3 97694507 97694538 -129830040 + (TG)n Simple_repeat Simple_repeat 2 32 0 1327 338 79 55 chr3 97694538 97694854 -129829724 - L2 LINE L2 -1017 2296 1921 2506 190 42 15 chr3 97694854 97695397 -129829181 + L1MC1 LINE L1 5767 6324 -9 1327 338 79 55 chr3 97695397 97695501 -129829077 - L2 LINE L2 -1392 1921 1821 490 266 92 0 chr3 97695504 97695711 -129828867 + L1M4 LINE L1 4067 4292 -1854 600 315 286 20 chr3 97695725 97696383 -129828195 - L2 LINE L2 -2034 1280 448 2849 208 10 31 chr3 97696860 97697476 -129827102 - MER52A LTR ERV1 0 1755 1153 947 144 35 11 chr3 97697476 97697650 -129826928 - LTR12 LTR ERV1 -67 647 470 * 1850 182 24 25 chr3 97697631 97698142 -129826436 - pTR5 LTR ERV1 -1186 1252 743 3324 190 164 36 chr3 97698142 97699146 -129825432 - MER52A LTR ERV1 -543 1212 1 24 106 0 0 chr3 97699224 97699318 -129825260 + AT_rich Low_complexity Low_complexity 1 94 0 582 286 36 1 chr3 97699518 97699551 -129825027 - MIR SINE MIR -28 180 150 1596 155 42 11 chr3 97699551 97699835 -129824743 - AluSx SINE Alu -17 295 3 582 286 36 1 chr3 97699835 97699971 -129824607 - MIR SINE MIR -58 150 7 201 204 0 20 chr3 97700269 97700318 -129824260 + A-rich Low_complexity Low_complexity 4 51 0 405 325 106 27 chr3 97700389 97700577 -129824001 + MIR SINE MIR 52 254 -8 792 176 7 0 chr3 97701843 97701991 -129822587 - L1PA15 LINE L1 0 6165 6017 21 0 0 0 chr3 97702570 97702591 -129821987 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 97703227 97703262 -129821316 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr3 97703461 97703498 -129821080 + AT_rich Low_complexity Low_complexity 1 37 0 360 352 68 14 chr3 97705835 97706054 -129818524 - MIR SINE MIR -11 251 21 375 374 52 18 chr3 97706360 97706689 -129817889 - L3 LINE CR1 -732 845 506 239 388 55 27 chr3 97706743 97706926 -129817652 - L3 LINE CR1 -1200 377 190 319 353 50 10 chr3 97708355 97708556 -129816022 + HAL1b LINE L1 432 640 -708 28 91 0 0 chr3 97708959 97709036 -129815542 + AT_rich Low_complexity Low_complexity 1 77 0 28 71 0 0 chr3 97709108 97709164 -129815414 + AT_rich Low_complexity Low_complexity 1 56 0 292 224 0 0 chr3 97709267 97709334 -129815244 - L1MB8 LINE L1 0 6178 6112 427 214 45 11 chr3 97709339 97709428 -129815150 + AluJ/FLAM SINE Alu 4 95 -207 30 45 0 0 chr3 97709575 97709619 -129814959 + AT_rich Low_complexity Low_complexity 1 44 0 578 315 152 13 chr3 97709974 97710434 -129814144 + L1MC4a LINE L1 5443 5966 -1842 1530 198 87 34 chr3 97710819 97711290 -129813288 - LTR54B LTR ERV1 -1 497 2 279 287 130 9 chr3 97712102 97712210 -129812368 + MIR SINE MIR 70 190 -72 928 292 75 18 chr3 97712513 97713195 -129811383 - L1MEc LINE L1 -3182 3033 2313 248 325 17 22 chr3 97713279 97713510 -129811068 - L1MEc LINE L1 -5495 901 672 229 293 0 27 chr3 97713811 97713886 -129810692 - L1MEc LINE L1 -5993 403 331 352 423 12 8 chr3 97713940 97714186 -129810392 - L1MEc LINE L1 -6140 256 10 197 306 145 31 chr3 97714187 97714380 -129810198 + L2 LINE L2 2140 2354 -960 264 222 0 0 chr3 97714727 97714799 -129809779 + (CA)n Simple_repeat Simple_repeat 1 72 0 1053 158 22 45 chr3 97715347 97715569 -129809009 - Tigger1 DNA MER2_type 0 2418 2202 769 224 6 6 chr3 97715558 97715714 -129808864 - Tigger1 DNA MER2_type -2261 157 2 * 274 285 127 48 chr3 97715719 97715884 -129808694 + MIR SINE MIR 84 261 -1 214 361 104 29 chr3 97716044 97716418 -129808160 + L2 LINE L2 1904 2305 -1009 21 82 0 0 chr3 97716661 97716710 -129807868 + AT_rich Low_complexity Low_complexity 1 49 0 181 358 150 8 chr3 97716880 97717000 -129807578 - L2 LINE L2 -195 3077 2941 22 80 0 0 chr3 97718870 97718920 -129805658 + AT_rich Low_complexity Low_complexity 1 50 0 2361 35 48 0 chr3 97720144 97720433 -129804145 - AluY SINE Alu -6 305 3 187 211 35 0 chr3 97720680 97720737 -129803841 + L2 LINE L2 1776 1834 -1480 277 345 0 18 chr3 97721003 97721116 -129803462 + (CATATA)n Simple_repeat Simple_repeat 2 112 0 368 259 37 67 chr3 97721122 97721257 -129803321 - MIR SINE MIR -120 142 12 311 286 148 30 chr3 97721335 97721639 -129802939 - L1MC/D LINE L1 -2440 5602 5263 26 30 0 0 chr3 97721744 97721777 -129802801 + AT_rich Low_complexity Low_complexity 1 33 0 245 309 66 37 chr3 97722405 97722541 -129802037 - L1MC/D LINE L1 -2513 3633 3494 424 182 0 7 chr3 97723207 97723315 -129801263 - L1MA7 LINE L1 -337 5965 5861 299 227 45 27 chr3 97723315 97723425 -129801153 + L1MA7 LINE L1 5962 6073 -218 189 107 0 0 chr3 97725540 97725568 -129799010 + (TG)n Simple_repeat Simple_repeat 2 29 0 64 35 0 0 chr3 97726206 97726291 -129798287 + AT_rich Low_complexity Low_complexity 1 85 0 25 0 0 0 chr3 97727009 97727034 -129797544 + AT_rich Low_complexity Low_complexity 1 25 0 262 303 17 90 chr3 97727640 97727818 -129796760 - MLT1H LTR MaLR -15 540 376 281 333 28 33 chr3 97727905 97728085 -129796493 - MLT1H LTR MaLR -292 257 79 200 254 0 28 chr3 97728226 97728297 -129796281 + (TA)n Simple_repeat Simple_repeat 2 70 0 242 369 59 60 chr3 97729140 97729787 -129794791 - L2 LINE L2 -455 2859 2214 298 171 49 24 chr3 97730076 97730158 -129794420 - MLT1I LTR MaLR -266 143 60 416 16 0 0 chr3 97730387 97730448 -129794130 - L1P LINE L1 -5085 1061 1001 1480 43 16 0 chr3 97730448 97730635 -129793943 + L1PA4 LINE L1 5961 6150 -5 27 49 0 0 chr3 97733472 97733513 -129791065 + AT_rich Low_complexity Low_complexity 1 41 0 1302 261 29 54 chr3 97733600 97734151 -129790427 - L1ME1 LINE L1 -102 6064 5528 573 289 67 52 chr3 97734154 97734600 -129789978 - L1ME1 LINE L1 -1284 4862 4410 458 279 74 26 chr3 97734780 97735009 -129789569 + MER46C DNA MER2_type 95 334 -4 647 229 36 0 chr3 97735165 97735305 -129789273 + MLT1B LTR MaLR 246 390 0 24 32 0 0 chr3 97735573 97735604 -129788974 + AT_rich Low_complexity Low_complexity 1 31 0 298 286 76 102 chr3 97735795 97736099 -129788479 - L2 LINE L2 -1 3312 3017 1759 225 100 22 chr3 97736368 97736830 -129787748 - MER89 LTR ERV1 -61 498 1 1982 306 124 39 chr3 97736837 97737873 -129786705 + L2 LINE L2 27 1150 -2164 187 257 324 0 chr3 97738118 97738192 -129786386 + MIR SINE MIR 59 156 -106 1445 208 28 52 chr3 97738364 97738764 -129785814 - MLT1B LTR MaLR 0 390 1 315 368 87 18 chr3 97739599 97739980 -129784598 + L2 LINE L2 1606 2012 -1302 208 329 13 0 chr3 97740303 97740379 -129784199 + L2 LINE L2 2267 2343 -971 461 288 262 34 chr3 97740460 97740875 -129783703 - L2 LINE L2 -15 3298 2790 876 337 70 30 chr3 97740875 97741403 -129783175 - L2 LINE L2 -838 2476 1928 925 264 55 90 chr3 97741494 97742125 -129782453 - L1MC5 LINE L1 -732 7229 6626 249 83 0 0 chr3 97742125 97742161 -129782417 + (TG)n Simple_repeat Simple_repeat 2 37 0 925 264 55 90 chr3 97742161 97742301 -129782277 - L1MC5 LINE L1 -1335 6626 6483 21 36 0 0 chr3 97743534 97743562 -129781016 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr3 97744004 97744038 -129780540 + AT_rich Low_complexity Low_complexity 1 34 0 26 50 0 0 chr3 97744443 97744483 -129780095 + AT_rich Low_complexity Low_complexity 1 40 0 1219 294 24 11 chr3 97744536 97744992 -129779586 - L1ME1 LINE L1 -15 6151 5690 926 184 6 0 chr3 97745432 97745600 -129778978 + FRAM SINE Alu 8 176 0 752 203 91 97 chr3 97745898 97746309 -129778269 - MLT1A1 LTR MaLR 0 374 2 490 298 57 0 chr3 97746311 97746452 -129778126 + MER5A DNA MER1_type 36 184 -5 244 344 41 16 chr3 97747569 97747691 -129776887 + MIR SINE MIR 71 195 -67 37 52 0 0 chr3 97748026 97748084 -129776494 + AT_rich Low_complexity Low_complexity 1 58 0 23 54 0 0 chr3 97748361 97748398 -129776180 + AT_rich Low_complexity Low_complexity 1 37 0 542 268 91 30 chr3 97748440 97748769 -129775809 + L1ME3 LINE L1 5680 6028 -134 22 0 0 0 chr3 97748897 97748919 -129775659 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 97748944 97748971 -129775607 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr3 97749477 97749512 -129775066 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr3 97749559 97749580 -129774998 + AT_rich Low_complexity Low_complexity 1 21 0 240 223 43 0 chr3 97749848 97749942 -129774636 + (TTAA)n Simple_repeat Simple_repeat 1 98 0 317 258 45 0 chr3 97750101 97750190 -129774388 - Tigger5 DNA MER2_type 0 2323 2231 219 36 0 0 chr3 97750840 97750868 -129773710 + (TG)n Simple_repeat Simple_repeat 1 28 0 1871 135 4 0 chr3 97750874 97751148 -129773430 - AluSx SINE Alu -37 275 1 249 360 181 26 chr3 97752916 97753341 -129771237 - L2 LINE L2 -5 3308 2818 898 307 62 30 chr3 97753700 97754071 -129770507 - MLT1E LTR MaLR 0 593 211 394 248 73 0 chr3 97754198 97754307 -129770271 - MLT1E LTR MaLR -433 160 44 592 267 46 9 chr3 97754503 97754720 -129769858 - L1M4 LINE L1 -3584 3981 3757 1266 193 55 24 chr3 97754743 97754997 -129769581 + AluSx SINE Alu 1 262 -50 260 27 27 0 chr3 97754997 97755034 -129769544 + (CAAA)n Simple_repeat Simple_repeat 4 41 0 323 166 74 10 chr3 97755075 97755174 -129769404 - L1M4 LINE L1 -3935 3630 3520 8449 107 17 0 chr3 97755274 97756515 -129768063 - L1P LINE L1 -3442 2704 1443 1572 182 3 36 chr3 97756862 97757164 -129767414 + AluJb SINE Alu 3 294 -18 269 26 26 0 chr3 97757164 97757202 -129767376 + (CA)n Simple_repeat Simple_repeat 2 40 0 1910 155 7 0 chr3 97758560 97758864 -129765714 - AluSx SINE Alu -6 306 1 383 239 77 8 chr3 97759071 97759188 -129765390 - MLT1I LTR MaLR -254 155 31 931 200 10 20 chr3 97759666 97759866 -129764712 + AluJ SINE Alu 1 198 -114 477 250 17 0 chr3 97759900 97760016 -129764562 + AluJ SINE Alu 178 295 -17 33 66 0 0 chr3 97760449 97760510 -129764068 + AT_rich Low_complexity Low_complexity 1 61 0 2094 74 0 21 chr3 97761991 97762309 -129762269 + AluY SINE Alu 5 316 0 22 0 0 0 chr3 97762689 97762711 -129761867 + AT_rich Low_complexity Low_complexity 1 22 0 863 161 25 0 chr3 97763004 97763166 -129761412 + FRAM SINE Alu 1 166 0 26 30 0 0 chr3 97766162 97766195 -129758383 + AT_rich Low_complexity Low_complexity 1 33 0 206 81 27 0 chr3 97766386 97766423 -129758155 + (TA)n Simple_repeat Simple_repeat 1 38 0 306 223 0 23 chr3 97767517 97767647 -129756931 + (TA)n Simple_repeat Simple_repeat 1 127 0 246 202 71 71 chr3 97769910 97769994 -129754584 + MIR SINE MIR 121 204 -58 439 306 53 15 chr3 97770425 97770631 -129753947 + L1M4 LINE L1 55 268 -6274 1494 181 54 51 chr3 97770694 97771030 -129753548 + MER1B DNA MER1_type 1 337 0 3823 254 97 65 chr3 97771139 97771964 -129752614 + L1M4 LINE L1 496 1294 -5350 1409 136 32 144 chr3 97771964 97772303 -129752275 + AluJb SINE Alu 2 302 0 3823 254 97 65 chr3 97772303 97775370 -129749208 + L1M4 LINE L1 1294 4546 -2098 1978 257 4 0 chr3 97775420 97775883 -129748695 - MLT1C LTR MaLR 0 467 3 1456 248 101 123 chr3 97775885 97776937 -129747641 - MLT1C-int LTR MaLR 0 1371 343 491 272 40 0 chr3 97776937 97777062 -129747516 - MLT1B LTR MaLR 0 467 338 5037 184 32 64 chr3 97777063 97778093 -129746485 - L1PA16 LINE L1 -4 6162 5100 235 156 0 0 chr3 97778093 97778138 -129746440 - LTR66 LTR ERVL -172 438 394 234 133 0 0 chr3 97778103 97778148 -129746430 + LTR66 LTR ERVL 395 439 -171 * 5037 184 32 64 chr3 97778138 97779062 -129745516 - L1PA16 LINE L1 -1066 5100 4245 1031 236 30 12 chr3 97779066 97779358 -129745220 - MLT1B LTR MaLR -118 349 1 323 293 142 27 chr3 97779422 97779647 -129744931 + MIR SINE MIR 10 260 -2 579 188 0 0 chr3 97780187 97780288 -129744290 + MLT1A1 LTR MaLR 265 365 0 180 0 0 0 chr3 97780828 97780848 -129743730 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 26 0 0 0 chr3 97781764 97781790 -129742788 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr3 97781824 97781852 -129742726 + AT_rich Low_complexity Low_complexity 1 28 0 2388 97 14 30 chr3 97782436 97782797 -129741781 - THE1A LTR MaLR 0 355 1 2151 124 3 0 chr3 97783094 97783400 -129741178 - AluSp SINE Alu 0 313 7 1026 88 7 0 chr3 97783403 97783540 -129741038 - AluSp SINE Alu -175 138 1 21 0 0 0 chr3 97784130 97784151 -129740427 + AT_rich Low_complexity Low_complexity 1 21 0 892 219 64 12 chr3 97784945 97785265 -129739313 + MSTD LTR MaLR 31 396 0 335 306 90 54 chr3 97786518 97786552 -129738026 + L1MEd LINE L1 757 788 -5341 1448 231 46 3 chr3 97786552 97786902 -129737676 + MLT1A1 LTR MaLR 1 365 0 335 306 90 54 chr3 97786902 97787668 -129736910 + L1MEd LINE L1 788 1591 -4538 28 0 0 0 chr3 97787752 97787780 -129736798 + AT_rich Low_complexity Low_complexity 1 28 0 405 254 49 101 chr3 97788030 97788337 -129736241 - MER57A LTR ERV1 -3 400 110 2109 140 8 11 chr3 97788337 97788693 -129735885 - THE1A LTR MaLR 0 355 1 10670 110 27 0 chr3 97788693 97790232 -129734346 - THE1A-int LTR MaLR 0 1580 1 1518 113 9 0 chr3 97790232 97790445 -129734133 - THE1A LTR MaLR 0 355 141 1834 162 9 0 chr3 97790449 97790764 -129733814 - L1MA4 LINE L1 -425 5875 5558 * 5147 189 16 30 chr3 97790756 97792139 -129732439 - L1MA4 LINE L1 -697 5607 4242 1229 153 113 99 chr3 97792144 97792517 -129732061 - L1M2 LINE L1 -525 5775 5398 731 236 20 30 chr3 97793381 97793498 -129731080 - MER31-int LTR ERV1 -1379 6158 6042 1297 258 42 28 chr3 97793498 97793858 -129730720 - MLT1A1 LTR MaLR 0 365 1 731 236 20 30 chr3 97793858 97793943 -129730635 - MER31-int LTR ERV1 -1495 6042 5958 456 288 14 27 chr3 97793970 97794116 -129730462 - MER31-int LTR ERV1 -1569 5968 5825 2816 235 52 69 chr3 97794271 97796176 -129728402 - MER31-int LTR ERV1 -1495 4184 2036 22 0 0 0 chr3 97796179 97796201 -129728377 + AT_rich Low_complexity Low_complexity 1 22 0 522 168 42 0 chr3 97796252 97796347 -129728231 - MER4A LTR ERV1 -565 99 1 1594 148 3 82 chr3 97796441 97796759 -129727819 + MER4A LTR ERV1 372 664 0 1192 113 137 0 chr3 97796762 97796966 -129727612 + MER4A-int LTR ERV1 1 232 -6366 9339 75 3 7 chr3 97797080 97798372 -129726206 - L1PA4 LINE L1 -2346 3800 2514 * 12031 66 2 0 chr3 97798371 97800616 -129723962 + L1PA4 LINE L1 3814 6061 -94 2870 74 36 0 chr3 97800727 97801118 -129723460 + L1PA6 LINE L1 5743 6147 -7 23 33 0 0 chr3 97801176 97801206 -129723372 + AT_rich Low_complexity Low_complexity 1 30 0 1999 155 0 0 chr3 97801292 97801583 -129722995 - AluSx SINE Alu -21 291 1 257 308 32 26 chr3 97801583 97801729 -129722849 - MER31-int LTR ERV1 -6430 1690 1541 8078 217 33 15 chr3 97801851 97802157 -129722421 - L1PB4 LINE L1 -32 6124 5825 2224 87 7 3 chr3 97802157 97802455 -129722123 - AluY SINE Alu -12 299 1 8078 217 33 15 chr3 97802455 97803132 -129721446 - L1PB4 LINE L1 -331 5825 5161 2242 98 3 0 chr3 97803132 97803428 -129721150 - AluSg SINE Alu -13 297 1 8078 217 33 15 chr3 97803428 97805379 -129719199 - L1PB4 LINE L1 -995 5161 3140 1721 251 68 59 chr3 97805373 97806141 -129718437 + L1ME1 LINE L1 5388 6162 -4 * 24 0 0 0 chr3 97806180 97806204 -129718374 + AT_rich Low_complexity Low_complexity 1 24 0 226 203 38 38 chr3 97806271 97806350 -129718228 + L1P LINE L1 2141 2219 -3927 402 256 175 14 chr3 97806472 97806827 -129717751 + L1ME LINE L1 2675 3086 -3060 479 312 87 46 chr3 97807344 97807780 -129716798 + L1ME LINE L1 4758 5211 -935 3331 178 46 39 chr3 97807780 97808518 -129716060 + L1MC1 LINE L1 5591 6333 0 574 323 49 20 chr3 97808581 97809022 -129715556 + L1ME LINE L1 5265 5719 -451 214 167 0 0 chr3 97809094 97809130 -129715448 + (CA)n Simple_repeat Simple_repeat 1 36 0 716 143 103 176 chr3 97809674 97810115 -129714463 - MER44D DNA MER2_type -1 704 4 26 30 0 0 chr3 97810263 97810296 -129714282 + AT_rich Low_complexity Low_complexity 1 33 0 25 65 0 0 chr3 97810463 97810509 -129714069 + AT_rich Low_complexity Low_complexity 1 46 0 2215 96 3 3 chr3 97810519 97810810 -129713768 + AluSx SINE Alu 3 293 -19 207 302 191 0 chr3 97811206 97811332 -129713246 - MIR SINE MIR -13 249 100 2452 169 118 25 chr3 97811346 97811855 -129712723 - MER21A LTR ERV1 0 931 376 816 198 39 28 chr3 97811860 97812042 -129712536 - MER21A LTR ERV1 -667 264 81 408 325 0 8 chr3 97812046 97812169 -129712409 - HERV16 LTR ERVL -3205 1791 1670 367 403 50 5 chr3 97812190 97812391 -129712187 - HERV16 LTR ERVL -3427 1569 1360 1720 204 15 121 chr3 97812542 97812614 -129711964 + MLT1C LTR MaLR 9 87 -380 2327 61 0 3 chr3 97812614 97812907 -129711671 + AluY SINE Alu 1 292 -19 1720 204 15 121 chr3 97812907 97813326 -129711252 + MLT1C LTR MaLR 87 465 -2 430 351 45 0 chr3 97813328 97813530 -129711048 - HERV16 LTR ERVL -3787 1209 999 3855 47 6 0 chr3 97814366 97814838 -129709740 - L1PA5 LINE L1 -275 5879 5405 516 289 35 0 chr3 97814946 97815088 -129709490 - LTR16A LTR ERVL 0 450 304 4425 117 14 35 chr3 97816217 97816578 -129708000 + L1PB1 LINE L1 5419 5757 -394 437 96 0 14 chr3 97816578 97816651 -129707927 + (TA)n Simple_repeat Simple_repeat 2 73 0 4425 117 14 35 chr3 97816651 97817030 -129707548 + L1PB1 LINE L1 5757 6143 -8 964 236 64 70 chr3 97817052 97817235 -129707343 - L1MEc LINE L1 -3698 2521 2338 389 158 0 0 chr3 97817235 97817311 -129707267 - L1MA7 LINE L1 0 6291 6216 964 236 64 70 chr3 97817311 97817582 -129706996 - L1MEc LINE L1 -3881 2338 2109 1405 257 39 16 chr3 97817582 97817967 -129706611 + MSTD LTR MaLR 3 396 0 964 236 64 70 chr3 97817967 97818142 -129706436 - L1MEc LINE L1 -4110 2109 1934 1449 255 56 76 chr3 97818184 97818581 -129705997 - L1ME1 LINE L1 -4 6957 6581 2447 61 0 0 chr3 97818581 97818891 -129705687 + AluY SINE Alu 1 310 -1 1449 255 56 76 chr3 97818891 97819257 -129705321 - L1ME1 LINE L1 -380 6581 6209 24 0 0 0 chr3 97819305 97819329 -129705249 + AT_rich Low_complexity Low_complexity 1 24 0 1167 173 37 0 chr3 97819329 97819543 -129705035 - L1PA16 LINE L1 -9 6157 5936 1515 250 24 52 chr3 97819546 97820185 -129704393 - L1ME1 LINE L1 -1287 5654 5034 414 0 0 0 chr3 97820210 97820256 -129704322 + (TATG)n Simple_repeat Simple_repeat 2 47 0 1966 61 3 34 chr3 97820256 97820550 -129704028 - AluY SINE Alu -26 285 1 2378 210 27 59 chr3 97820550 97821435 -129703143 + MER54A LTR ERVL 1 644 0 675 266 16 64 chr3 97821457 97821769 -129702809 - L1ME1 LINE L1 -1947 4994 4698 888 244 44 4 chr3 97821799 97822074 -129702504 - L1ME1 LINE L1 -3195 3746 3461 777 147 33 20 chr3 97822074 97822224 -129702354 + MER4E LTR ERV1 1 152 -627 1638 157 11 3 chr3 97822328 97822614 -129701964 + MER4E LTR ERV1 464 751 -15 369 285 32 98 chr3 97822648 97822894 -129701684 - L1ME1 LINE L1 -5321 1620 1391 544 304 70 79 chr3 97822939 97823308 -129701270 - L1ME1 LINE L1 -5403 1020 655 709 278 117 28 chr3 97823456 97823816 -129700762 - L1ME1 LINE L1 -6000 423 32 266 284 27 7 chr3 97823839 97823987 -129700591 - L1MEc LINE L1 -4935 1461 1311 1133 239 15 15 chr3 97824547 97824810 -129699768 + AluJo SINE Alu 36 298 -14 22 35 0 0 chr3 97824857 97824886 -129699692 + AT_rich Low_complexity Low_complexity 1 29 0 214 365 26 52 chr3 97825937 97826129 -129698449 + L2 LINE L2 2432 2618 -696 22 35 0 0 chr3 97827013 97827042 -129697536 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr3 97827204 97827233 -129697345 + AT_rich Low_complexity Low_complexity 1 29 0 306 223 0 23 chr3 97828231 97828361 -129696217 + (TA)n Simple_repeat Simple_repeat 1 127 0 492 274 68 26 chr3 97829592 97830393 -129694185 - L1M4 LINE L1 -2125 5440 4574 551 254 122 10 chr3 97830428 97830723 -129693855 - L1M4 LINE L1 -3174 4391 4064 247 327 164 6 chr3 97831545 97831704 -129692874 + MIR3 SINE MIR 25 208 0 7835 191 34 10 chr3 97832202 97834327 -129690251 - L1M4 LINE L1 -4707 2858 11 246 288 136 8 chr3 97834639 97834764 -129689814 + MIR SINE MIR 121 261 -1 25 0 0 0 chr3 97834787 97834812 -129689766 + AT_rich Low_complexity Low_complexity 1 25 0 1365 159 8 71 chr3 97835679 97835955 -129688623 + AluSx SINE Alu 54 313 0 22 35 0 0 chr3 97836006 97836035 -129688543 + AT_rich Low_complexity Low_complexity 1 29 0 27 73 0 0 chr3 97836059 97836114 -129688464 + AT_rich Low_complexity Low_complexity 1 55 0 4717 63 45 12 chr3 97836292 97836585 -129687993 + L1PA8 LINE L1 5490 5772 -401 2438 60 7 0 chr3 97836585 97836884 -129687694 + AluY SINE Alu 2 302 -9 4717 63 45 12 chr3 97836884 97837253 -129687325 + L1PA8 LINE L1 5772 6173 0 24 32 0 0 chr3 97837338 97837369 -129687209 + AT_rich Low_complexity Low_complexity 1 31 0 2590 40 0 0 chr3 97837370 97837673 -129686905 + AluY SINE Alu 1 303 -8 216 121 69 17 chr3 97838134 97838192 -129686386 + GA-rich Low_complexity Low_complexity 4 64 0 22 0 0 0 chr3 97838269 97838291 -129686287 + AT_rich Low_complexity Low_complexity 1 22 0 600 268 79 61 chr3 97839147 97839475 -129685103 - LTR40b LTR ERVL -2 460 127 336 24 0 0 chr3 97839668 97839709 -129684869 + (CA)n Simple_repeat Simple_repeat 2 42 0 1631 188 14 3 chr3 97840281 97840569 -129684009 + AluJb SINE Alu 1 291 -21 23 0 0 0 chr3 97840569 97840592 -129683986 + AT_rich Low_complexity Low_complexity 1 23 0 211 356 19 48 chr3 97841045 97841149 -129683429 - L3 LINE CR1 -57 1520 1420 2478 63 0 0 chr3 97841709 97842012 -129682566 + AluY SINE Alu 2 304 -7 284 333 17 22 chr3 97843270 97843450 -129681128 + L1MEc LINE L1 464 642 -6183 705 285 94 34 chr3 97844042 97844896 -129679682 + L1MEc LINE L1 1060 1974 -4670 222 336 35 9 chr3 97844965 97845081 -129679497 + L2 LINE L2 2662 2780 -534 367 200 12 0 chr3 97845280 97845360 -129679218 - MLT1I LTR MaLR 0 409 329 21 36 0 0 chr3 97845502 97845530 -129679048 + AT_rich Low_complexity Low_complexity 1 28 0 313 48 0 0 chr3 97846746 97846788 -129677790 + MADE1 DNA Mariner 35 76 -4 1558 205 3 0 chr3 97847094 97847377 -129677201 + AluJo SINE Alu 11 294 -18 21 0 0 0 chr3 97847395 97847416 -129677162 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr3 97847657 97847695 -129676883 + AT_rich Low_complexity Low_complexity 1 38 0 1800 172 3 3 chr3 97848382 97848685 -129675893 - AluSx SINE Alu -7 305 3 340 57 19 0 chr3 97848854 97848907 -129675671 + L1MA9 LINE L1 6259 6312 0 897 294 123 77 chr3 97848963 97849575 -129675003 + MER115 DNA AcHobo 44 683 -10 258 32 0 0 chr3 97849626 97849657 -129674921 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 7312 41 0 5 chr3 97849689 97850865 -129673713 - L1PA5 LINE L1 -1 6153 4980 5821 53 0 0 chr3 97850865 97851603 -129672975 + L1PA5 LINE L1 4245 4982 -1164 22 35 0 0 chr3 97852702 97852731 -129671847 + AT_rich Low_complexity Low_complexity 1 29 0 270 0 0 0 chr3 97853070 97853100 -129671478 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 1793 191 71 54 chr3 97853549 97854087 -129670491 - MER57-int LTR ERV1 -1674 4657 4111 2262 184 2 35 chr3 97854087 97854538 -129670040 - MER50 LTR ERV1 -18 716 281 * 2288 176 13 0 chr3 97854537 97854930 -129669648 - MER57A LTR ERV1 -5 398 1 1486 174 34 0 chr3 97854932 97855197 -129669381 - MER50 LTR ERV1 -447 287 14 3269 211 92 128 chr3 97855199 97855301 -129669277 - MER57-int LTR ERV1 -2216 4115 4011 1501 144 169 28 chr3 97855301 97855620 -129668958 + THE1B LTR MaLR 1 364 0 10738 117 20 1 chr3 97855620 97857171 -129667407 + THE1B-int LTR MaLR 1 1580 0 1998 139 33 28 chr3 97857173 97857533 -129667045 + THE1B LTR MaLR 3 364 0 3269 211 92 128 chr3 97857533 97859343 -129665235 - MER57-int LTR ERV1 -2320 4011 2332 1305 293 31 14 chr3 97859469 97859827 -129664751 - MER57-int LTR ERV1 -4057 2274 1911 275 200 0 46 chr3 97859917 97859982 -129664596 - MER57-int LTR ERV1 -4472 1859 1798 425 170 72 85 chr3 97859988 97860141 -129664437 - MER57-int LTR ERV1 -4062 2201 2051 315 71 0 0 chr3 97860295 97860337 -129664241 + (A)n Simple_repeat Simple_repeat 1 42 0 352 314 73 15 chr3 97860659 97860796 -129663782 - MER57-int LTR ERV1 -5098 1233 1089 337 136 0 76 chr3 97860908 97860974 -129663604 - MER57-int LTR ERV1 -5429 902 842 363 243 40 53 chr3 97861024 97861176 -129663402 - MER57-int LTR ERV1 -5705 1832 1683 2208 221 171 12 chr3 97861265 97861944 -129662634 - LTR48 LTR ERV1 0 787 1 34 0 0 0 chr3 97862322 97862356 -129662222 + AT_rich Low_complexity Low_complexity 1 34 0 1320 175 95 22 chr3 97863131 97863405 -129661173 + AluJo SINE Alu 3 296 -6 647 192 32 0 chr3 97863554 97863679 -129660899 + MLT1A1 LTR MaLR 13 141 -224 2354 123 69 28 chr3 97863681 97864113 -129660465 - LTR7 LTR ERV1 0 450 1 2667 138 22 23 chr3 97864113 97864778 -129659800 - HERVH LTR ERV1 0 7713 3953 2162 134 44 3 chr3 97864770 97865135 -129659443 - HERVH LTR ERV1 -3977 3736 3357 * 12068 113 28 28 chr3 97865135 97867106 -129657472 - HERVH LTR ERV1 -4883 2830 859 2898 158 35 6 chr3 97867138 97867624 -129656954 - THE1-int LTR MaLR -654 926 427 1960 260 90 42 chr3 97867781 97868314 -129656264 + L1MD3 LINE L1 4797 4653 -1493 2100 120 3 13 chr3 97868314 97868615 -129655963 + AluSp SINE Alu 1 298 -15 1960 260 90 42 chr3 97868615 97869405 -129655173 + L1MD3 LINE L1 4652 5403 -743 276 336 0 10 chr3 97869574 97869678 -129654900 + MLT1I LTR MaLR 88 190 -219 245 313 0 0 chr3 97869843 97869907 -129654671 + MLT1I LTR MaLR 346 409 0 1855 180 31 67 chr3 97870267 97870717 -129653861 + Tigger2a DNA MER2_type 1 434 0 3529 113 2 6 chr3 97870936 97871449 -129653129 + MER9 LTR ERVK 1 511 0 23 33 0 0 chr3 97871456 97871486 -129653092 + AT_rich Low_complexity Low_complexity 1 30 0 552 223 0 0 chr3 97871538 97871650 -129652928 + Tigger5 DNA MER2_type 4 115 -2208 * 1164 155 50 0 chr3 97871647 97871847 -129652731 + Tigger5 DNA MER2_type 2114 2323 0 1272 228 37 69 chr3 97872373 97872751 -129651827 - MLT1A2 LTR MaLR -5 369 4 1956 143 10 0 chr3 97872844 97873152 -129651426 - AluSx SINE Alu -1 311 1 21 36 0 0 chr3 97873740 97873768 -129650810 + AT_rich Low_complexity Low_complexity 1 28 0 2013 112 0 17 chr3 97873888 97874183 -129650395 + AluSq SINE Alu 1 290 -23 189 0 0 0 chr3 97874186 97874207 -129650371 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 606 281 52 54 chr3 97874487 97874940 -129649638 + MLT1C LTR MaLR 27 451 -16 25 51 0 0 chr3 97875586 97875625 -129648953 + AT_rich Low_complexity Low_complexity 1 39 0 6944 233 55 23 chr3 97875793 97876303 -129648275 + L1MC1 LINE L1 11 503 -6110 189 0 0 0 chr3 97876303 97876324 -129648254 + (TTTG)n Simple_repeat Simple_repeat 4 24 0 6944 233 55 23 chr3 97876324 97877974 -129646604 + L1MC1 LINE L1 503 2099 -4514 2298 116 0 0 chr3 97877974 97878285 -129646293 + AluSx SINE Alu 1 311 -1 6944 233 55 23 chr3 97878285 97882394 -129642184 + L1MC1 LINE L1 2099 6602 -11 28 102 0 0 chr3 97882798 97882896 -129641682 + AT_rich Low_complexity Low_complexity 1 98 0 2090 142 7 0 chr3 97882965 97883275 -129641303 + AluSx SINE Alu 1 312 0 1721 191 0 3 chr3 97883507 97883806 -129640772 - AluJb SINE Alu -14 298 1 1902 183 40 0 chr3 97885912 97886262 -129638316 - THE1B LTR MaLR 0 364 1 8930 143 60 5 chr3 97886267 97887760 -129636818 - THE1B-int LTR MaLR -5 1575 2 2097 160 22 3 chr3 97887761 97888118 -129636460 - THE1B LTR MaLR 0 364 1 25 31 0 0 chr3 97888123 97888155 -129636423 + AT_rich Low_complexity Low_complexity 1 32 0 2380 163 32 91 chr3 97888580 97889164 -129635414 - MER34 LTR ERV1 -5 537 1 1763 176 0 0 chr3 97889348 97889637 -129634941 - AluJb SINE Alu -22 290 2 28 0 0 0 chr3 97892491 97892519 -129632059 + AT_rich Low_complexity Low_complexity 1 28 0 265 224 153 12 chr3 97893280 97893365 -129631213 - MER34 LTR ERV1 -2 540 444 1918 204 120 16 chr3 97893601 97893825 -129630753 + MLT2B3 LTR ERVL 1 200 -354 2374 112 39 3 chr3 97893825 97894183 -129630395 + THE1C LTR MaLR 3 373 -2 1918 204 120 16 chr3 97894183 97894409 -129630169 + MLT2B3 LTR ERVL 200 498 -56 205 222 19 0 chr3 97894409 97894463 -129630115 + (TA)n Simple_repeat Simple_repeat 1 55 0 234 0 0 0 chr3 97894824 97894850 -129629728 + (TG)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr3 97895260 97895282 -129629296 + AT_rich Low_complexity Low_complexity 1 22 0 250 109 55 0 chr3 97897089 97897144 -129627434 + (CATA)n Simple_repeat Simple_repeat 3 60 0 21 36 0 0 chr3 97897492 97897520 -129627058 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr3 97898926 97898955 -129625623 + AT_rich Low_complexity Low_complexity 1 29 0 289 330 47 42 chr3 97898998 97899213 -129625365 + MIR SINE MIR 3 218 -44 22 70 0 0 chr3 97899255 97899298 -129625280 + AT_rich Low_complexity Low_complexity 1 43 0 1055 269 11 73 chr3 97899475 97899843 -129624735 + MLT1E1 LTR MaLR 310 654 0 303 382 51 13 chr3 97900291 97900448 -129624130 - MIR3 SINE MIR -36 172 10 3644 300 45 28 chr3 97902071 97903640 -129620938 + L1PBa LINE L1 3 1597 -5266 1365 170 8 21 chr3 97903626 97903867 -129620711 + L1P5 LINE L1 28 265 -5939 * 10098 220 79 19 chr3 97903868 97904209 -129620369 + L1P5 LINE L1 322 641 -5570 264 77 0 0 chr3 97904209 97904248 -129620330 + (TAAA)n Simple_repeat Simple_repeat 3 41 0 10098 220 79 19 chr3 97904248 97908691 -129615887 + L1P5 LINE L1 641 5645 -566 1564 175 58 0 chr3 97908691 97908846 -129615732 - AluJb SINE Alu -22 290 111 189 74 0 0 chr3 97908846 97908873 -129615705 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1564 175 58 0 chr3 97908873 97908991 -129615587 - AluJb SINE Alu -201 111 1 10098 220 79 19 chr3 97908991 97909069 -129615509 + L1P5 LINE L1 5645 5717 -494 32 26 0 0 chr3 97909689 97909728 -129614850 + AT_rich Low_complexity Low_complexity 1 39 0 600 203 63 0 chr3 97909820 97909963 -129614615 + L1MA9 LINE L1 6160 6311 -1 2882 30 0 0 chr3 97909990 97910323 -129614255 - L1PA4 LINE L1 -385 5769 5437 1830 30 4 13 chr3 97910321 97910555 -129614023 + L1PA4 LINE L1 5755 5986 -169 * 192 152 0 0 chr3 97910968 97911001 -129613577 + (TG)n Simple_repeat Simple_repeat 2 34 0 348 204 20 51 chr3 97911019 97911117 -129613461 - L1MC4 LINE L1 -1339 6703 6609 28 0 0 0 chr3 97912824 97912852 -129611726 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr3 97913051 97913081 -129611497 + AT_rich Low_complexity Low_complexity 1 30 0 5042 134 65 134 chr3 97913359 97914728 -129609850 + MER52C LTR ERV1 1 1274 -4 374 343 64 18 chr3 97914807 97915087 -129609491 - LTR16A LTR ERVL -31 419 127 1129 256 35 87 chr3 97915090 97915574 -129609004 + LTR40b LTR ERVL 4 462 0 700 170 20 8 chr3 97915725 97915866 -129608712 - MSTA LTR MaLR -215 149 1 2089 121 0 7 chr3 97916136 97916442 -129608136 + AluY SINE Alu 6 309 -2 722 235 133 50 chr3 97916688 97917067 -129607511 + MLT2B1 LTR ERVL 1 456 -64 22 70 0 0 chr3 97917128 97917171 -129607407 + AT_rich Low_complexity Low_complexity 1 43 0 186 133 0 0 chr3 97917201 97917231 -129607347 + (TG)n Simple_repeat Simple_repeat 1 30 0 238 167 0 74 chr3 97917231 97917284 -129607294 + MLT2B1 LTR ERVL 464 512 -8 6251 136 31 2 chr3 97917284 97918288 -129606290 - Tigger1 DNA MER2_type 0 2418 1386 1508 188 44 62 chr3 97918288 97918611 -129605967 + LTR56 LTR ERV1 1 315 -130 1200 249 34 0 chr3 97918611 97918904 -129605674 - AluJb SINE Alu -9 303 1 1508 188 44 62 chr3 97918904 97919033 -129605545 + LTR56 LTR ERV1 315 445 0 7412 147 26 51 chr3 97919052 97920472 -129604106 - Tigger1 DNA MER2_type -1027 1391 7 21 0 0 0 chr3 97921268 97921289 -129603289 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 97922496 97922519 -129602059 + AT_rich Low_complexity Low_complexity 1 23 0 26 30 0 0 chr3 97923183 97923216 -129601362 + AT_rich Low_complexity Low_complexity 1 33 0 337 246 0 0 chr3 97923355 97923424 -129601154 + MER34 LTR ERV1 2 70 -472 380 312 65 52 chr3 97924425 97924656 -129599922 - MIR SINE MIR -21 241 8 21 0 0 0 chr3 97926249 97926270 -129598308 + AT_rich Low_complexity Low_complexity 1 21 0 37 52 0 0 chr3 97926351 97926409 -129598169 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr3 97926802 97926823 -129597755 + AT_rich Low_complexity Low_complexity 1 21 0 212 253 170 35 chr3 97926849 97926958 -129597620 - MER5A DNA MER1_type -28 160 31 202 224 0 45 chr3 97927039 97927106 -129597472 + (TTTA)n Simple_repeat Simple_repeat 1 64 0 1166 221 34 87 chr3 97927111 97927523 -129597055 + MLT1B LTR MaLR 1 390 0 22 0 0 0 chr3 97927551 97927573 -129597005 + AT_rich Low_complexity Low_complexity 1 22 0 207 139 0 0 chr3 97927656 97927692 -129596886 + (TAAAA)n Simple_repeat Simple_repeat 5 40 0 749 338 57 52 chr3 97927693 97928273 -129596305 - MLT2E LTR ERVL 0 628 46 180 0 0 0 chr3 97928273 97928293 -129596285 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 489 32 0 0 chr3 97928298 97928360 -129596218 - L1PA4 LINE L1 -3 6152 6091 3077 34 22 8 chr3 97928360 97928971 -129595607 + L1P1 LINE L1 5014 5633 -522 267 287 23 11 chr3 97929789 97929876 -129594702 + MLT1F1 LTR MaLR 35 122 -445 2108 218 35 13 chr3 97929908 97930458 -129594120 + L1MC3 LINE L1 7212 7773 -12 720 255 16 16 chr3 97931078 97931266 -129593312 + MER5A DNA MER1_type 1 188 -1 2349 63 3 3 chr3 97931289 97931591 -129592987 - AluY SINE Alu -9 302 1 204 293 0 0 chr3 97931955 97932013 -129592565 - MIR SINE MIR -109 153 96 1079 238 54 78 chr3 97932583 97933137 -129591441 - MER34 LTR ERV1 -1 541 1 2048 188 68 15 chr3 97934646 97935046 -129589532 - MSTB LTR MaLR -3 423 3 712 150 75 15 chr3 97937423 97937556 -129587022 + MER4B LTR ERV1 1 141 -469 2403 149 17 19 chr3 97937556 97937973 -129586605 + MER4E LTR ERV1 354 769 -10 1516 106 58 4 chr3 97937974 97938249 -129586329 - AluSp SINE Alu -23 290 1 226 343 81 0 chr3 97938276 97938375 -129586203 - L2 LINE L2 -12 3301 3195 373 279 9 45 chr3 97938473 97938584 -129585994 - MER5B DNA MER1_type -68 110 4 1942 100 7 29 chr3 97938727 97939007 -129585571 - AluSc SINE Alu -35 274 1 2112 130 0 0 chr3 97939230 97939530 -129585048 - AluSq SINE Alu -13 300 1 705 244 23 54 chr3 97939570 97939763 -129584815 - L1M LINE L1 -800 5346 5171 1963 124 10 10 chr3 97939763 97940061 -129584517 - AluY SINE Alu -12 299 2 705 244 23 54 chr3 97940061 97940168 -129584410 - L1M LINE L1 -975 5171 5062 1382 189 26 39 chr3 97940658 97940970 -129583608 - THE1B LTR MaLR -56 308 1 3685 149 8 3 chr3 97941059 97941658 -129582920 - LTR43 LTR ERV1 0 602 1 406 122 0 24 chr3 97942332 97942414 -129582164 + MER96B DNA MER1_type? 100 179 -238 2236 103 3 3 chr3 97942649 97942951 -129581627 + AluSx SINE Alu 1 302 -10 753 148 13 39 chr3 97942961 97943093 -129581485 + L1M3 LINE L1 5536 5665 -506 2118 105 16 13 chr3 97943093 97943398 -129581180 + AluSq SINE Alu 1 306 -7 753 148 13 39 chr3 97943398 97943420 -129581158 + L1M3 LINE L1 5665 5686 -485 202 200 0 83 chr3 97944034 97944094 -129580484 + G-rich Low_complexity Low_complexity 6 60 0 290 211 19 19 chr3 97944108 97944212 -129580366 + L1PA4 LINE L1 6049 6152 -3 3628 173 16 65 chr3 97944217 97944258 -129580320 + L1PB4 LINE L1 5042 5083 -1073 1201 152 60 5 chr3 97944258 97944475 -129580103 - MER30 DNA MER1_type 0 230 2 3628 173 16 65 chr3 97944475 97944521 -129580057 + L1PB4 LINE L1 5083 5130 -1026 1498 194 17 20 chr3 97944521 97944814 -129579764 + AluJo SINE Alu 1 292 -20 3628 173 16 65 chr3 97944814 97945774 -129578804 + L1PB4 LINE L1 5130 6029 -127 1244 213 4 16 chr3 97945783 97946032 -129578546 + AluJo SINE Alu 43 288 -24 651 154 23 15 chr3 97946038 97946168 -129578410 + L1PB4 LINE L1 6026 6156 0 23 108 0 0 chr3 97946743 97946836 -129577742 + AT_rich Low_complexity Low_complexity 1 93 0 755 298 166 11 chr3 97947856 97948205 -129576373 - L2 LINE L2 -802 2512 2110 24 24 0 24 chr3 97949132 97949149 -129575429 + AT_rich Low_complexity Low_complexity 1 17 -24 2220 71 0 44 chr3 97949149 97949445 -129575133 + AluY SINE Alu 1 283 -28 24 24 0 24 chr3 97949445 97949469 -129575109 + AT_rich Low_complexity Low_complexity 17 41 0 21 0 0 0 chr3 97950313 97950334 -129574244 + AT_rich Low_complexity Low_complexity 1 21 0 201 176 0 0 chr3 97950955 97950989 -129573589 + T-rich Low_complexity Low_complexity 1 34 0 760 288 47 28 chr3 97951028 97951452 -129573126 - MLT1E LTR MaLR -1 592 67 25 31 0 0 chr3 97951804 97951836 -129572742 + AT_rich Low_complexity Low_complexity 1 32 0 250 355 0 11 chr3 97951881 97951974 -129572604 + L2 LINE L2 3219 3310 -3 773 316 82 19 chr3 97952947 97953263 -129571315 - LTR16A LTR ERVL -106 344 9 2137 128 72 6 chr3 97953268 97953603 -129570975 - LTR18A LTR ERVL 0 357 1 23893 189 14 12 chr3 97953604 97957758 -129566820 - HERVL18 LTR ERVL 0 6047 1886 188 33 0 33 chr3 97957765 97957795 -129566783 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 315 0 0 0 chr3 97957920 97957955 -129566623 + (TG)n Simple_repeat Simple_repeat 2 36 0 5359 184 30 2 chr3 97958156 97959258 -129565320 + L1 LINE L1 3862 4994 -1152 1605 203 44 19 chr3 97960378 97960743 -129563835 + THE1C LTR MaLR 1 374 -1 383 316 62 62 chr3 97961078 97961369 -129563209 + MER110-int LTR ERV1 2503 2793 -1854 21 82 0 0 chr3 97961911 97961960 -129562618 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr3 97962139 97962167 -129562411 + AT_rich Low_complexity Low_complexity 1 28 0 28 0 0 0 chr3 97962388 97962416 -129562162 + AT_rich Low_complexity Low_complexity 1 28 0 278 237 59 34 chr3 97964670 97964788 -129559790 + LTR16C LTR ERVL 367 487 -4 1326 189 0 68 chr3 97965713 97965978 -129558600 - AluJo SINE Alu -65 247 1 646 336 12 27 chr3 97966025 97966281 -129558297 + MIR SINE MIR 9 260 -2 21 0 0 0 chr3 97968240 97968261 -129556317 + AT_rich Low_complexity Low_complexity 1 21 0 468 348 10 5 chr3 97969268 97969475 -129555103 + Charlie8 DNA MER1_type 46 253 -2164 1077 206 4 49 chr3 97969680 97969956 -129554622 + AluJo SINE Alu 47 311 0 22 88 0 0 chr3 97970344 97970401 -129554177 + AT_rich Low_complexity Low_complexity 1 57 0 21 57 0 0 chr3 97971645 97971680 -129552898 + AT_rich Low_complexity Low_complexity 1 35 0 2952 237 25 2 chr3 97971989 97972596 -129551982 + L1MA5A LINE L1 65 685 -6104 4528 188 26 49 chr3 97972718 97974788 -129549790 + L1MA5A LINE L1 4914 6934 -5 6942 246 47 8 chr3 97974795 97977717 -129546861 + L1MA5 LINE L1 2206 5293 -853 231 296 0 0 chr3 97977695 97977793 -129546785 + L1MC4 LINE L1 6595 6692 -1350 * 3446 174 154 14 chr3 97977817 97978663 -129545915 + L1MA5 LINE L1 5332 6295 -5 1331 177 10 47 chr3 97979049 97979348 -129545230 + MER65A LTR ERV1 1 288 -157 2073 199 17 17 chr3 97979349 97979765 -129544813 + MSTC LTR MaLR 1 416 -12 2264 76 7 10 chr3 97979793 97980095 -129544483 + AluY SINE Alu 1 301 -10 442 196 54 0 chr3 97980115 97980227 -129544351 + FLAM_A SINE Alu 14 131 -11 1189 235 132 19 chr3 97980250 97980676 -129543902 - MLT1D LTR MaLR -25 480 7 1891 152 52 5 chr3 97984490 97985045 -129539533 - L1PB1 LINE L1 -595 5556 4971 1328 126 13 35 chr3 97985045 97985275 -129539303 + L1PB1 LINE L1 5562 5786 -365 253 67 22 22 chr3 97985278 97985323 -129539255 + (TA)n Simple_repeat Simple_repeat 2 46 0 339 25 0 0 chr3 97985333 97985373 -129539205 + (CA)n Simple_repeat Simple_repeat 2 41 0 2504 88 3 28 chr3 97985373 97985736 -129538842 + L1PB1 LINE L1 5793 6146 -5 233 393 121 11 chr3 97986135 97986415 -129538163 + L2 LINE L2 2665 2975 -339 285 370 19 0 chr3 97986689 97986797 -129537781 + L2 LINE L2 3161 3270 -2 1131 228 89 28 chr3 97987905 97988230 -129536348 - MLT1D LTR MaLR 0 505 161 321 233 62 68 chr3 97988272 97988418 -129536160 + MER57A LTR ERV1 64 208 -195 1234 213 54 61 chr3 97988511 97988788 -129535790 - MSTB LTR MaLR 0 426 202 329 174 58 0 chr3 97988788 97988857 -129535721 - L1PA6 LINE L1 -6 6148 6076 1234 213 54 61 chr3 97988857 97989058 -129535520 - MSTB LTR MaLR -224 202 1 236 211 0 0 chr3 97989060 97989117 -129535461 + MER57A LTR ERV1 347 403 0 * 606 242 176 0 chr3 97989117 97989260 -129535318 - MLT1D LTR MaLR -332 173 4 389 305 76 36 chr3 97989325 97989548 -129535030 - LTR16C LTR ERVL 0 491 260 198 0 0 0 chr3 97989931 97989953 -129534625 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 41 17 0 17 chr3 97990101 97990125 -129534453 + AT_rich Low_complexity Low_complexity 1 24 -34 2022 97 3 27 chr3 97990125 97990424 -129534154 + AluSc SINE Alu 1 292 -17 41 17 0 17 chr3 97990424 97990458 -129534120 + AT_rich Low_complexity Low_complexity 24 58 0 345 277 8 77 chr3 97990585 97990715 -129533863 - L2 LINE L2 0 3313 3193 33 90 0 0 chr3 97990730 97990819 -129533759 + AT_rich Low_complexity Low_complexity 1 89 0 22 0 0 0 chr3 97991338 97991360 -129533218 + AT_rich Low_complexity Low_complexity 1 22 0 399 224 90 8 chr3 97991789 97991939 -129532639 - LTR48 LTR ERV1 -13 740 380 781 238 164 60 chr3 97991977 97992409 -129532169 - LTR48 LTR ERV1 -305 482 6 198 222 0 0 chr3 97992899 97992953 -129531625 + (TA)n Simple_repeat Simple_repeat 2 55 0 21 36 0 0 chr3 97993510 97993538 -129531040 + AT_rich Low_complexity Low_complexity 1 28 0 2219 209 62 2 chr3 97993613 97994096 -129530482 - L1MA4 LINE L1 -41 6259 5748 24 53 0 0 chr3 97995092 97995130 -129529448 + AT_rich Low_complexity Low_complexity 1 38 0 21 71 0 0 chr3 97995888 97995930 -129528648 + AT_rich Low_complexity Low_complexity 1 42 0 511 260 118 30 chr3 97996193 97996362 -129528216 + MIR SINE MIR 24 207 -55 252 360 5 63 chr3 97996822 97997011 -129527567 - MIR SINE MIR -45 217 40 240 369 32 6 chr3 97997043 97997200 -129527378 - L2 LINE L2 -561 2753 2593 1600 175 59 37 chr3 97997791 97998145 -129526433 + MLT1C LTR MaLR 1 362 -105 195 257 0 0 chr3 97998521 97998595 -129525983 + (TATG)n Simple_repeat Simple_repeat 1 74 0 258 307 0 10 chr3 97999285 97999386 -129525192 + L1ME LINE L1 5791 5890 -280 28 61 0 0 chr3 97999419 97999468 -129525110 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr3 98000611 98000639 -129523939 + AT_rich Low_complexity Low_complexity 1 28 0 1473 171 4 0 chr3 98001062 98001290 -129523288 + AluSx SINE Alu 1 229 -83 21 57 0 0 chr3 98003277 98003312 -129521266 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr3 98003323 98003352 -129521226 + AT_rich Low_complexity Low_complexity 1 29 0 5189 177 10 14 chr3 98003559 98005216 -129519362 + L1P5 LINE L1 4151 5806 -345 474 160 11 53 chr3 98005216 98005403 -129519175 + (TA)n Simple_repeat Simple_repeat 2 180 0 283 247 0 22 chr3 98005415 98005504 -129519074 + L1MC4 LINE L1 6615 6701 -1341 192 253 0 0 chr3 98005541 98005616 -129518962 + (TA)n Simple_repeat Simple_repeat 1 75 0 229 292 22 0 chr3 98005617 98005706 -129518872 - L1MC4 LINE L1 -1340 6702 6612 251 138 8 69 chr3 98005706 98005836 -129518742 + (TA)n Simple_repeat Simple_repeat 1 122 0 23 0 0 0 chr3 98006204 98006227 -129518351 + AT_rich Low_complexity Low_complexity 1 23 0 1013 67 8 8 chr3 98007753 98007887 -129516691 + AluY SINE Alu 1 134 -177 2162 89 7 7 chr3 98007887 98008216 -129516362 + AluY SINE Alu 1 311 0 327 288 118 13 chr3 98008385 98008538 -129516040 - L1ME LINE L1 -633 6035 5867 732 276 105 4 chr3 98008569 98008797 -129515781 + MIR SINE MIR 12 262 0 401 305 94 48 chr3 98009202 98009661 -129514917 - L1ME LINE L1 -1293 5351 4872 722 193 0 0 chr3 98009903 98010038 -129514540 + L1PB4 LINE L1 6014 6148 -8 327 306 120 0 chr3 98010353 98010461 -129514117 - LTR33A LTR ERVL -344 179 59 327 307 39 42 chr3 98010558 98010867 -129513711 - L1ME LINE L1 -2155 4489 4182 24 0 0 0 chr3 98010972 98010996 -129513582 + AT_rich Low_complexity Low_complexity 1 24 0 308 252 17 25 chr3 98011081 98011200 -129513378 + (TA)n Simple_repeat Simple_repeat 1 118 0 302 261 67 58 chr3 98011201 98011530 -129513048 - L1ME LINE L1 -2885 3759 3428 1106 167 9 28 chr3 98012615 98012831 -129511747 - AluJb SINE Alu -100 212 1 514 91 45 34 chr3 98013095 98013271 -129511307 + (TA)n Simple_repeat Simple_repeat 1 178 0 361 43 54 33 chr3 98013317 98013409 -129511169 + (TA)n Simple_repeat Simple_repeat 1 94 0 380 351 74 21 chr3 98015262 98015504 -129509074 + MIR SINE MIR 5 259 -3 349 319 71 0 chr3 98016609 98016791 -129507787 + L2 LINE L2 3119 3313 0 1208 254 102 17 chr3 98017131 98017608 -129506970 - L1ME LINE L1 -401 5763 5248 288 207 58 50 chr3 98018096 98018217 -129506361 - L1ME LINE L1 -6355 187 66 331 286 69 42 chr3 98018300 98018632 -129505946 - L1ME LINE L1 -1746 4400 4060 15313 206 130 23 chr3 98018681 98023814 -129500764 + L1PBa LINE L1 1 5846 -1016 736 181 0 69 chr3 98023814 98023974 -129500604 - Tigger2a DNA MER2_type -284 150 2 536 273 103 33 chr3 98023999 98024570 -129500008 - L1ME LINE L1 -2207 3939 3329 3999 22 0 0 chr3 98024786 98025249 -129499329 - L1PA2 LINE L1 -1 6154 5692 1287 20 7 0 chr3 98025249 98025402 -129499176 + L1P1 LINE L1 5386 5539 -616 29 94 0 0 chr3 98025524 98025609 -129498969 + AT_rich Low_complexity Low_complexity 1 85 0 188 24 98 0 chr3 98025819 98025860 -129498718 + (TA)n Simple_repeat Simple_repeat 2 46 0 247 318 22 57 chr3 98027261 98027423 -129497155 + MER5A DNA MER1_type 1 145 -33 1263 274 79 44 chr3 98028118 98028312 -129496266 - MLT1F LTR MaLR 0 542 356 1989 154 0 6 chr3 98028312 98028623 -129495955 - AluSx SINE Alu -3 309 1 1263 274 79 44 chr3 98028623 98028947 -129495631 - MLT1F LTR MaLR -186 356 6 279 328 37 78 chr3 98030470 98030738 -129493840 + L2 LINE L2 2928 3184 -129 2384 206 35 11 chr3 98030742 98031281 -129493297 + MER89 LTR ERV1 1 552 -7 1148 194 86 124 chr3 98031323 98031712 -129492866 + MLT2D LTR ERVL 3 405 -9 189 0 0 0 chr3 98031712 98031733 -129492845 + (TC)n Simple_repeat Simple_repeat 2 22 0 369 0 0 0 chr3 98031733 98031774 -129492804 + (CA)n Simple_repeat Simple_repeat 2 42 0 1148 194 86 124 chr3 98031774 98031811 -129492767 + MLT2D LTR ERVL 403 414 0 281 293 24 65 chr3 98031851 98031901 -129492677 + L2 LINE L2 3192 3242 -71 1578 219 43 6 chr3 98031901 98032253 -129492325 - MLT1A1 LTR MaLR 0 365 1 281 293 24 65 chr3 98032253 98032325 -129492253 + L2 LINE L2 3242 3309 -4 1174 204 0 31 chr3 98033932 98034187 -129490391 - AluJb SINE Alu 0 312 66 25 51 0 0 chr3 98034195 98034234 -129490344 + AT_rich Low_complexity Low_complexity 1 39 0 253 254 106 49 chr3 98036769 98036911 -129487667 - L2 LINE L2 -60 3253 3104 21 0 0 0 chr3 98036974 98036995 -129487583 + AT_rich Low_complexity Low_complexity 1 21 0 476 306 143 16 chr3 98037502 98037747 -129486831 + LTR16A LTR ERVL 92 367 -83 207 329 27 80 chr3 98037806 98038031 -129486547 - L2 LINE L2 -1868 1446 1234 239 367 77 10 chr3 98038049 98038360 -129486218 + L2 LINE L2 1979 2310 -1004 518 0 16 0 chr3 98038411 98038473 -129486105 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 180 348 0 22 chr3 98038676 98038765 -129485813 + L2 LINE L2 2589 2675 -639 562 268 60 22 chr3 98039529 98039712 -129484866 + MLT1D LTR MaLR 1 190 -315 1255 221 37 106 chr3 98039742 98040177 -129484401 + MLT1D-int LTR MaLR 961 1365 -6 1454 229 83 33 chr3 98040182 98040663 -129483915 + MLT1D LTR MaLR 1 505 0 41 21 0 0 chr3 98043512 98043560 -129481018 + AT_rich Low_complexity Low_complexity 1 48 0 30 59 0 0 chr3 98045049 98045100 -129479478 + AT_rich Low_complexity Low_complexity 1 51 0 500 318 40 83 chr3 98045417 98045813 -129478765 + MLT1I LTR MaLR 28 406 -3 260 269 37 46 chr3 98049280 98049388 -129475190 + MIR SINE MIR 21 127 -81 349 167 14 28 chr3 98049426 98049498 -129475080 + MLT1B LTR MaLR 1 71 -396 1094 241 31 31 chr3 98049504 98049790 -129474788 + AluJo SINE Alu 2 287 -15 715 98 21 21 chr3 98049832 98049975 -129474603 + (GGAGA)n Simple_repeat Simple_repeat 2 144 0 405 289 13 51 chr3 98051183 98051478 -129473100 + GA-rich Low_complexity Low_complexity 1 283 0 185 196 20 0 chr3 98051570 98051621 -129472957 + GA-rich Low_complexity Low_complexity 1 52 0 701 208 15 58 chr3 98051621 98051741 -129472837 + MLT1B LTR MaLR 64 188 -202 257 0 30 0 chr3 98051741 98051774 -129472804 + (TG)n Simple_repeat Simple_repeat 1 34 0 701 208 15 58 chr3 98051774 98051949 -129472629 + MLT1B LTR MaLR 188 322 -68 353 284 0 0 chr3 98051950 98052038 -129472540 - L1MC4 LINE L1 -1341 6701 6614 275 127 0 36 chr3 98052038 98052093 -129472485 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 328 150 0 17 chr3 98052094 98052154 -129472424 + MLT1B LTR MaLR 332 390 0 1695 144 23 0 chr3 98052524 98052780 -129471798 - AluSq SINE Alu -12 301 40 306 224 35 12 chr3 98052995 98053080 -129471498 - LTR50 LTR ERVL 0 795 709 5294 47 0 13 chr3 98053109 98053785 -129470793 + L1PA4 LINE L1 5488 6154 -1 251 331 91 33 chr3 98053797 98054039 -129470539 - LTR50 LTR ERVL -164 631 376 23 0 0 0 chr3 98054309 98054332 -129470246 + AT_rich Low_complexity Low_complexity 1 23 0 1090 184 5 27 chr3 98054677 98054864 -129469714 + L1M2 LINE L1 5605 5788 -503 2826 87 49 7 chr3 98054864 98055290 -129469288 + MLT2A1 LTR ERVL 1 444 0 1090 184 5 27 chr3 98055290 98055325 -129469253 + L1M2 LINE L1 5788 5822 -469 966 213 40 30 chr3 98055323 98055624 -129468954 - L1M4 LINE L1 -810 5540 5237 * 1020 252 48 19 chr3 98055624 98055933 -129468645 + MLT1C LTR MaLR 10 327 -140 284 254 74 95 chr3 98055934 98056123 -129468455 - L1M4 LINE L1 -5535 717 533 * 10247 31 15 1 chr3 98056122 98057836 -129466742 + L1PA4 LINE L1 4130 5867 -288 33 0 0 0 chr3 98057945 98057978 -129466600 + AT_rich Low_complexity Low_complexity 1 33 0 33 66 0 0 chr3 98058102 98058163 -129466415 + AT_rich Low_complexity Low_complexity 1 61 0 201 121 0 0 chr3 98058448 98058481 -129466097 + (TC)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr3 98058818 98058840 -129465738 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 98059113 98059134 -129465444 + AT_rich Low_complexity Low_complexity 1 21 0 1504 103 144 22 chr3 98059181 98059452 -129465126 + AluSg SINE Alu 1 304 -6 238 270 0 105 chr3 98059535 98059687 -129464891 + A-rich Low_complexity Low_complexity 4 139 0 234 0 0 0 chr3 98059725 98059751 -129464827 + (TTTTTA)n Simple_repeat Simple_repeat 3 28 0 742 308 82 14 chr3 98060710 98061200 -129463378 - L1M3b LINE L1 -4664 1617 1095 424 349 103 30 chr3 98061689 98062056 -129462522 - L1M4 LINE L1 -5884 397 4 22 0 0 0 chr3 98062497 98062519 -129462059 + AT_rich Low_complexity Low_complexity 1 22 0 36 0 0 0 chr3 98062601 98062637 -129461941 + AT_rich Low_complexity Low_complexity 1 36 0 26 30 0 0 chr3 98062736 98062769 -129461809 + AT_rich Low_complexity Low_complexity 1 33 0 10371 131 20 1 chr3 98062950 98064500 -129460078 + THE1B-int LTR MaLR 1 1580 0 2188 151 28 14 chr3 98064502 98064859 -129459719 + THE1B LTR MaLR 3 364 0 3219 121 10 6 chr3 98064859 98065312 -129459266 + L1PA13 LINE L1 5655 6112 -51 424 113 127 0 chr3 98065312 98065383 -129459195 - MADE1 DNA Mariner 0 80 1 3219 121 10 6 chr3 98065383 98065433 -129459145 + L1PA13 LINE L1 6112 6160 -3 2277 63 13 7 chr3 98065442 98065743 -129458835 + AluY SINE Alu 1 303 -8 4320 113 18 32 chr3 98065950 98066678 -129457900 + L1MA2 LINE L1 5587 6304 0 1603 241 86 2 chr3 98066742 98067561 -129457017 - MER45B DNA AcHobo 0 1040 10 1921 171 20 3 chr3 98068308 98068654 -129455924 - MLT1B LTR MaLR -38 352 1 345 330 19 0 chr3 98068661 98068767 -129455811 + ERVL LTR ERVL 4145 4252 -1512 397 306 78 33 chr3 98068916 98069161 -129455417 + ERVL LTR ERVL 4644 4899 -865 427 223 26 33 chr3 98069176 98069312 -129455266 + ERVL LTR ERVL 4819 4997 -530 2002 234 122 58 chr3 98069459 98069898 -129454680 + Charlie2a DNA MER1_type 1523 1932 -930 1250 200 35 41 chr3 98069898 98070188 -129454390 - AluJo SINE Alu -14 288 1 2002 234 122 58 chr3 98070188 98070926 -129453652 + Charlie2a DNA MER1_type 1932 2776 -86 485 310 83 96 chr3 98070965 98071912 -129452666 - L2 LINE L2 -1252 2062 1058 2354 211 32 18 chr3 98071942 98072505 -129452073 - LTR49 LTR ERV1 -23 572 2 464 191 101 74 chr3 98072505 98072694 -129451884 - L1MB8 LINE L1 -20 6158 5965 637 230 9 47 chr3 98072743 98072893 -129451685 - L1ME2 LINE L1 -144 6020 5869 2169 114 142 5 chr3 98072893 98073287 -129451291 - LTR7 LTR ERV1 -2 448 1 637 230 9 47 chr3 98073287 98073316 -129451262 - L1ME2 LINE L1 -295 5869 5840 4644 68 18 8 chr3 98073316 98073932 -129450646 + LTR17 LTR ERV1 1 622 -158 22 0 0 0 chr3 98074231 98074253 -129450325 + AT_rich Low_complexity Low_complexity 1 22 0 4406 197 50 23 chr3 98074311 98074888 -129449690 - L1MA7 LINE L1 -5 6286 5726 1365 223 3 17 chr3 98074888 98075184 -129449394 - AluJo SINE Alu -20 292 1 4406 197 50 23 chr3 98075184 98075694 -129448884 - L1MA7 LINE L1 -565 5726 5165 461 128 0 13 chr3 98076497 98076575 -129448003 - MADE1 DNA Mariner -2 78 2 254 346 13 0 chr3 98077478 98077556 -129447022 - MIR SINE MIR -169 93 15 747 11 0 0 chr3 98078946 98079034 -129445544 - L1P LINE L1 -747 5408 5321 6233 30 1 0 chr3 98079034 98079772 -129444806 + L1PA3 LINE L1 5414 6152 -3 378 0 0 0 chr3 98080732 98080774 -129443804 + (TG)n Simple_repeat Simple_repeat 1 42 0 1817 224 24 53 chr3 98081476 98081984 -129442594 - MLT1D LTR MaLR -9 496 4 258 32 0 0 chr3 98082032 98082063 -129442515 + (TG)n Simple_repeat Simple_repeat 1 31 0 24 53 0 0 chr3 98082078 98082116 -129442462 + AT_rich Low_complexity Low_complexity 1 38 0 369 256 60 43 chr3 98082960 98083077 -129441501 - MLT1H LTR MaLR -227 322 204 25 0 0 0 chr3 98083253 98083278 -129441300 + AT_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr3 98083562 98083602 -129440976 + AT_rich Low_complexity Low_complexity 1 40 0 249 203 189 0 chr3 98083885 98083959 -129440619 - L2 LINE L2 -1 3312 3225 1783 206 66 5 chr3 98084169 98084562 -129440016 - MSTA LTR MaLR -1 427 11 406 74 0 0 chr3 98087414 98087468 -129437110 + MADE1 DNA Mariner 27 80 0 674 217 53 61 chr3 98088036 98088134 -129436444 - MER4C LTR ERV1 0 669 572 2140 120 51 20 chr3 98088134 98088485 -129436093 - THE1B LTR MaLR 0 364 3 674 217 53 61 chr3 98088485 98088746 -129435832 - MER4C LTR ERV1 -97 572 156 658 169 232 10 chr3 98088742 98088949 -129435629 - MER4C LTR ERV1 -212 253 1 * 4446 56 5 5 chr3 98089595 98090180 -129434398 - LTR14C LTR ERVK -2 585 1 397 415 42 42 chr3 98091410 98091885 -129432693 + MER69 DNA AcHobo 2010 2484 -42 25 31 0 0 chr3 98092834 98092866 -129431712 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr3 98094095 98094124 -129430454 + AT_rich Low_complexity Low_complexity 1 29 0 3015 71 0 0 chr3 98094833 98095229 -129429349 - L1P LINE L1 -1455 4691 4296 5553 65 6 0 chr3 98095230 98095951 -129428627 + L1PA6 LINE L1 5425 6149 -5 271 301 0 29 chr3 98096899 98097035 -129427543 + A-rich Low_complexity Low_complexity 5 136 0 27 29 0 0 chr3 98097561 98097595 -129426983 + AT_rich Low_complexity Low_complexity 1 34 0 2117 123 3 3 chr3 98097937 98098247 -129426331 + AluSg SINE Alu 1 310 0 1463 220 7 7 chr3 98098247 98098550 -129426028 + AluJo SINE Alu 1 304 -8 21 36 0 0 chr3 98098669 98098697 -129425881 + AT_rich Low_complexity Low_complexity 1 28 0 198 143 0 0 chr3 98098817 98098852 -129425726 + (TATATG)n Simple_repeat Simple_repeat 6 40 0 372 241 153 0 chr3 98098934 98099071 -129425507 + L1M4 LINE L1 2891 3048 -3098 967 279 115 52 chr3 98099125 98100254 -129424324 + L1M4 LINE L1 3169 4368 -1778 226 290 0 32 chr3 98100443 98100536 -129424042 + L1MC4 LINE L1 6614 6703 -1339 670 162 18 17 chr3 98100560 98100711 -129423867 - MLT2D LTR ERVL -48 366 250 421 293 37 25 chr3 98101021 98101263 -129423315 + L1M4 LINE L1 4549 4793 -1353 505 320 42 52 chr3 98101281 98101706 -129422872 - L1M4 LINE L1 -874 5272 4852 21 0 0 0 chr3 98103103 98103124 -129421454 + AT_rich Low_complexity Low_complexity 1 21 0 193 384 35 29 chr3 98103788 98103960 -129420618 - L2 LINE L2 -702 2612 2440 29 0 0 0 chr3 98104426 98104455 -129420123 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 98104595 98104618 -129419960 + AT_rich Low_complexity Low_complexity 1 23 0 693 214 8 125 chr3 98105718 98105860 -129418718 + LTR65 LTR ERV1 345 447 -222 1600 170 4 0 chr3 98105860 98106131 -129418447 + AluJb SINE Alu 12 283 -29 693 214 8 125 chr3 98106131 98106236 -129418342 + LTR65 LTR ERV1 447 563 -106 26 30 0 0 chr3 98107261 98107294 -129417284 + AT_rich Low_complexity Low_complexity 1 33 0 1600 111 6 41 chr3 98107573 98108063 -129416515 + L1P3 LINE L1 8 586 -5875 4053 137 32 6 chr3 98108171 98108834 -129415744 + MER50 LTR ERV1 32 711 -23 803 204 30 21 chr3 98108850 98109146 -129415432 + MLT1A1 LTR MaLR 6 365 0 865 286 72 10 chr3 98109191 98109607 -129414971 - MER20B DNA MER1_type -24 759 318 256 216 14 54 chr3 98109752 98109826 -129414752 - MER20B DNA MER1_type -653 130 60 22 56 0 0 chr3 98111889 98111925 -129412653 + AT_rich Low_complexity Low_complexity 1 36 0 1756 151 3 50 chr3 98113425 98113743 -129410835 - AluSx SINE Alu -8 304 2 227 254 0 0 chr3 98114411 98114470 -129410108 + (TTCA)n Simple_repeat Simple_repeat 1 59 0 441 278 38 15 chr3 98115630 98115763 -129408815 + MIR SINE MIR 81 216 -46 21 0 0 0 chr3 98117237 98117258 -129407320 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 98117655 98117681 -129406897 + AT_rich Low_complexity Low_complexity 1 26 0 222 213 21 0 chr3 98117946 98117993 -129406585 + (TG)n Simple_repeat Simple_repeat 2 49 0 1539 119 0 0 chr3 98117995 98118205 -129406373 + AluSg/x SINE Alu 82 291 -21 26 0 0 0 chr3 98118365 98118391 -129406187 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr3 98119236 98119259 -129405319 + AT_rich Low_complexity Low_complexity 1 23 0 301 221 11 11 chr3 98119266 98119361 -129405217 + (CATA)n Simple_repeat Simple_repeat 4 98 0 254 286 30 53 chr3 98121473 98121606 -129402972 - MARNA DNA Mariner -247 339 210 1163 62 25 12 chr3 98121921 98122081 -129402497 - L1PA4 LINE L1 -4 6151 5990 24 67 0 0 chr3 98122138 98122183 -129402395 + AT_rich Low_complexity Low_complexity 1 45 0 209 275 43 14 chr3 98122577 98122646 -129401932 + MER5C DNA MER1_type 6 76 -248 265 276 23 17 chr3 98122657 98122830 -129401748 + L1ME LINE L1 5349 5599 -567 501 293 65 77 chr3 98123139 98123428 -129401150 - L1M4 LINE L1 -1832 4314 4030 306 51 17 34 chr3 98123428 98123487 -129401091 + (TTTG)n Simple_repeat Simple_repeat 4 61 0 501 293 65 77 chr3 98123487 98123627 -129400951 - L1M4 LINE L1 -2116 4030 3890 1044 241 4 13 chr3 98123722 98123954 -129400624 - MLT1A1 LTR MaLR -5 360 131 1803 215 14 3 chr3 98123963 98124312 -129400266 + MLT1A1 LTR MaLR 13 365 0 392 177 13 25 chr3 98124356 98124435 -129400143 - MLT1A1 LTR MaLR -287 78 1 836 236 72 8 chr3 98124455 98124692 -129399886 - L1ME LINE L1 -431 5735 5484 448 316 51 31 chr3 98124720 98125134 -129399444 + L1ME LINE L1 5261 5682 -439 25 75 0 0 chr3 98125161 98125214 -129399364 + AT_rich Low_complexity Low_complexity 1 53 0 29 28 0 0 chr3 98125387 98125423 -129399155 + AT_rich Low_complexity Low_complexity 1 36 0 2433 213 16 4 chr3 98126057 98126607 -129397971 - L1 LINE L1 -1582 4564 4008 1563 162 9 164 chr3 98126605 98127130 -129397448 + L1 LINE L1 4581 5024 -1122 * 6778 49 2 4 chr3 98127129 98128611 -129395967 + L1PA4 LINE L1 4636 6114 -41 5710 173 47 31 chr3 98128882 98131150 -129393428 - L1MA6 LINE L1 0 6886 4581 262 164 182 0 chr3 98131155 98131210 -129393368 - AluJb SINE Alu -2 300 236 1040 191 0 0 chr3 98131210 98131388 -129393190 - AluJb SINE Alu -134 178 1 4017 194 74 111 chr3 98131388 98132498 -129392080 - L1MA6 LINE L1 -2135 4597 3447 2357 73 0 25 chr3 98132498 98132815 -129391763 + AluY SINE Alu 1 309 -2 4017 194 74 111 chr3 98132815 98133061 -129391517 - L1MA6 LINE L1 -3285 3447 3301 2010 123 10 16 chr3 98133061 98133370 -129391208 - AluSg SINE Alu -3 307 1 4017 194 74 111 chr3 98133370 98133521 -129391057 - L1MA6 LINE L1 -3431 3301 3146 1038 284 47 13 chr3 98133519 98133836 -129390742 - L1MA6 LINE L1 -5732 921 594 * 581 239 62 122 chr3 98133968 98134353 -129390225 + MLT1A1 LTR MaLR 1 362 -3 1571 288 59 39 chr3 98134473 98136171 -129388407 - L1MCb LINE L1 -3103 3461 1776 13041 149 23 8 chr3 98136176 98137352 -129387226 - L1PA10 LINE L1 0 6483 5326 3348 80 13 7 chr3 98137352 98137802 -129386776 - MLT2A2 LTR ERVL 0 453 1 13041 149 23 8 chr3 98137802 98140206 -129384372 - L1PA10 LINE L1 -1157 5326 2852 1366 209 40 82 chr3 98140207 98140774 -129383804 - MLT2A2 LTR ERVL 0 554 1 6098 115 51 1 chr3 98140774 98141669 -129382909 - HERVL-A2 LTR ERVL 0 5654 4715 7223 228 16 48 chr3 98141674 98143582 -129380996 - L1PA10 LINE L1 -3606 2855 1060 2360 66 0 53 chr3 98143582 98143901 -129380677 + AluY SINE Alu 1 302 -9 7223 228 16 48 chr3 98143901 98144755 -129379823 - L1PA10 LINE L1 -5401 1060 180 200 227 0 0 chr3 98145006 98145050 -129379528 + A-rich Low_complexity Low_complexity 1 44 0 2987 268 34 41 chr3 98145337 98146652 -129377926 - L1MCb LINE L1 -4851 1194 283 2644 36 3 0 chr3 98146652 98146959 -129377619 - AluY SINE Alu -3 308 1 2987 268 34 41 chr3 98146959 98147241 -129377337 - L1MCb LINE L1 -5762 283 1 6199 111 7 10 chr3 98197598 98198566 -129326012 + L1P LINE L1 3898 4862 -1284 257 125 56 14 chr3 98198566 98198638 -129325940 + (TA)n Simple_repeat Simple_repeat 1 75 0 371 131 52 13 chr3 98199143 98199296 -129325282 + (TA)n Simple_repeat Simple_repeat 1 159 0 19148 139 14 46 chr3 98199431 98201513 -129323065 + L1PA6 LINE L1 430 2579 -3567 185 0 0 39 chr3 98201513 98201539 -129323039 + (CAAA)n Simple_repeat Simple_repeat 1 25 0 19148 139 14 46 chr3 98201539 98201986 -129322592 + L1PA6 LINE L1 2579 3039 -3107 6691 74 5 0 chr3 98201986 98203127 -129321451 + L1PA6 LINE L1 5010 6154 0 19148 139 14 46 chr3 98203127 98204195 -129320383 + L1PA6 LINE L1 3039 3910 -2236 27 0 0 0 chr3 98204467 98204494 -129320084 + GC_rich Low_complexity Low_complexity 1 27 0 432 37 0 0 chr3 98204733 98204787 -129319791 + (TA)n Simple_repeat Simple_repeat 1 54 0 33 56 0 0 chr3 98204986 98205040 -129319538 + AT_rich Low_complexity Low_complexity 1 54 0 4664 228 40 36 chr3 98205058 98205557 -129319021 + L1MA2 LINE L1 2752 3247 -3057 246 81 0 0 chr3 98205557 98205594 -129318984 + (TAAA)n Simple_repeat Simple_repeat 4 40 0 4664 228 40 36 chr3 98205594 98206715 -129317863 + L1MA2 LINE L1 3247 4362 -1942 1594 157 65 0 chr3 98206715 98207158 -129317420 - AluSx SINE Alu 0 462 3 4664 228 40 36 chr3 98207158 98208978 -129315600 + L1MA2 LINE L1 4362 6304 0 10521 212 41 8 chr3 98208989 98210585 -129313993 + L1MA7 LINE L1 2585 4127 -2164 189 0 0 0 chr3 98210585 98210606 -129313972 + (TA)n Simple_repeat Simple_repeat 2 22 0 10521 212 41 8 chr3 98210606 98212319 -129312259 + L1MA7 LINE L1 4127 6014 -277 289 253 0 12 chr3 98212566 98212649 -129311929 + L1MA8 LINE L1 5973 6054 -237 606 155 17 0 chr3 98212650 98212766 -129311812 + L1MA7 LINE L1 6162 6279 -12 1582 252 82 12 chr3 98212793 98213221 -129311357 - MLT2B1 LTR ERVL -60 460 3 216 0 0 0 chr3 98213489 98213513 -129311065 + (TTA)n Simple_repeat Simple_repeat 3 26 0 2420 81 3 0 chr3 98213513 98213834 -129310744 - L1PA7 LINE L1 -18 6136 5815 9931 113 5 1 chr3 98213844 98216088 -129308490 - L1PA7 LINE L1 -11 6143 3896 3992 108 17 16 chr3 98216088 98216725 -129307853 + L1PA7 LINE L1 3254 3891 -2255 27 87 0 0 chr3 98217102 98217171 -129307407 + AT_rich Low_complexity Low_complexity 1 69 0 793 207 48 58 chr3 98219693 98219732 -129304846 - MLT1B LTR MaLR 0 390 352 1096 220 110 39 chr3 98219732 98220014 -129304564 + AluJo SINE Alu 1 302 0 793 207 48 58 chr3 98220014 98220182 -129304396 - MLT1B LTR MaLR -38 352 185 363 113 0 81 chr3 98220741 98220803 -129303775 - L1PA8A LINE L1 -8 6123 6067 206 168 20 20 chr3 98220976 98221077 -129303501 + (TA)n Simple_repeat Simple_repeat 2 102 0 632 281 32 43 chr3 98221862 98222302 -129302276 + L1ME2 LINE L1 5717 6149 -17 1215 287 61 44 chr3 98222390 98223028 -129301550 + L1ME3A LINE L1 5517 6165 -5 565 263 83 0 chr3 98223983 98224116 -129300462 - FRAM SINE Alu -30 146 3 219 36 0 0 chr3 98224243 98224271 -129300307 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 534 280 17 0 chr3 98224737 98224912 -129299666 + L1M4 LINE L1 4383 4560 -1586 13181 211 15 28 chr3 98225104 98229139 -129295439 - L1P3 LINE L1 -2410 4051 3 2280 131 19 16 chr3 98229167 98229541 -129295037 - THE1C LTR MaLR 0 375 1 515 289 105 47 chr3 98229588 98230371 -129294207 - L1MEc LINE L1 -2420 3795 2968 418 260 73 82 chr3 98230399 98230724 -129293854 - L1MEc LINE L1 -4908 1297 1004 1441 340 141 32 chr3 98231771 98233084 -129291494 - L2 LINE L2 -995 2319 864 24 53 0 0 chr3 98233638 98233676 -129290902 + AT_rich Low_complexity Low_complexity 1 38 0 23 54 0 0 chr3 98233705 98233742 -129290836 + AT_rich Low_complexity Low_complexity 1 37 0 717 45 0 0 chr3 98235357 98235445 -129289133 + AluY SINE Alu 40 127 -184 642 43 0 32 chr3 98235445 98235538 -129289040 + L1PA4 LINE L1 6066 6155 0 1358 82 6 6 chr3 98235583 98235766 -129288812 + AluYa5 SINE Alu 119 301 -10 333 374 40 18 chr3 98237207 98237434 -129287144 + HAL1b LINE L1 72 303 -1045 304 218 0 0 chr3 98237448 98237503 -129287075 - AluJ/FRAM SINE Alu -19 283 229 335 332 50 5 chr3 98237603 98237802 -129286776 + HAL1b LINE L1 397 604 -744 328 274 127 19 chr3 98237849 98238006 -129286572 + HAL1b LINE L1 684 857 -491 1404 126 16 57 chr3 98238457 98238703 -129285875 + AluSq SINE Alu 1 236 -77 1120 174 35 23 chr3 98238763 98239022 -129285556 - L1MA8 LINE L1 -2 6289 6028 332 254 113 14 chr3 98239448 98239590 -129284988 + L1MC4 LINE L1 6993 7148 -894 769 239 113 25 chr3 98239747 98239986 -129284592 - MER70B LTR ERVL -166 412 153 573 248 87 24 chr3 98239986 98240192 -129284386 + L1MC4 LINE L1 7588 7806 -236 389 252 7 63 chr3 98240221 98240364 -129284214 + L1MC4 LINE L1 7907 8041 -1 261 243 14 14 chr3 98240812 98240882 -129283696 + MIR SINE MIR 20 89 -173 383 236 123 28 chr3 98241066 98241172 -129283406 - MER5A DNA MER1_type -73 116 1 33 25 0 0 chr3 98242286 98242326 -129282252 + AT_rich Low_complexity Low_complexity 1 40 0 27 29 0 0 chr3 98242772 98242806 -129281772 + AT_rich Low_complexity Low_complexity 1 34 0 3133 170 38 44 chr3 98244529 98245046 -129279532 - L1MA9 LINE L1 0 6312 5798 424 44 15 29 chr3 98245046 98245114 -129279464 + (TAGA)n Simple_repeat Simple_repeat 2 68 0 3133 170 38 44 chr3 98245114 98245279 -129279299 - L1MA9 LINE L1 -514 5798 5634 21 57 0 0 chr3 98245324 98245359 -129279219 + AT_rich Low_complexity Low_complexity 1 35 0 1147 189 102 37 chr3 98245689 98245933 -129278645 + AluJo SINE Alu 9 268 -44 195 42 0 0 chr3 98245946 98245970 -129278608 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 206 263 0 88 chr3 98248711 98248768 -129275810 - MIR SINE MIR -162 100 49 25 31 0 0 chr3 98248893 98248925 -129275653 + AT_rich Low_complexity Low_complexity 1 32 0 1930 156 137 11 chr3 98249852 98250231 -129274347 + MSTA LTR MaLR 1 427 -1 339 130 0 0 chr3 98250465 98250519 -129274059 + (TA)n Simple_repeat Simple_repeat 2 55 0 182 37 37 0 chr3 98250857 98250884 -129273694 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 257 322 42 8 chr3 98251015 98251133 -129273445 - L2 LINE L2 0 3313 3192 292 374 145 16 chr3 98253940 98254258 -129270320 - L3 LINE CR1 -1 1576 1218 2501 151 68 0 chr3 98256322 98256792 -129267786 + L1PB4 LINE L1 5651 6152 -4 9699 143 20 2 chr3 98257346 98259730 -129264848 + L1PA10 LINE L1 3739 6162 -6 29 0 0 0 chr3 98260338 98260367 -129264211 + AT_rich Low_complexity Low_complexity 1 29 0 1035 227 98 14 chr3 98261455 98261750 -129262828 + L1MC2 LINE L1 6017 6336 -8 1392 247 28 8 chr3 98262037 98262397 -129262181 + MLT1A2 LTR MaLR 4 370 -4 212 392 30 36 chr3 98262434 98262600 -129261978 + MIR3 SINE MIR 16 180 -28 589 234 12 18 chr3 98262610 98262781 -129261797 - MER53 DNA DNA -1 188 19 618 292 9 4 chr3 98262833 98263005 -129261573 - MER5A DNA MER1_type -1 188 8 30 83 0 0 chr3 98263083 98263155 -129261423 + AT_rich Low_complexity Low_complexity 1 72 0 220 324 118 12 chr3 98264124 98264294 -129260284 - MIR SINE MIR -71 191 4 256 92 62 77 chr3 98264299 98264364 -129260214 - MLT2B1 LTR ERVL -1 519 456 228 171 26 26 chr3 98264365 98264441 -129260137 + (TA)n Simple_repeat Simple_repeat 2 77 0 1054 256 15 40 chr3 98264441 98264715 -129259863 + L1M3b LINE L1 1 267 -6014 1534 109 22 0 chr3 98264817 98265046 -129259532 - L1PA8 LINE L1 -33 6139 5906 832 215 3 111 chr3 98265059 98265268 -129259310 - L1 LINE L1 -3663 2483 2324 1945 158 3 3 chr3 98265268 98265578 -129259000 - AluSx SINE Alu 0 312 3 832 215 3 111 chr3 98265578 98265712 -129258866 - L1 LINE L1 -3822 2324 2177 * 2298 92 9 12 chr3 98265707 98266032 -129258546 - L1P LINE L1 -1826 4320 3997 6247 88 13 1 chr3 98266032 98267301 -129257277 + L1PA7 LINE L1 4839 6138 -16 381 86 0 0 chr3 98267307 98267365 -129257213 + (TA)n Simple_repeat Simple_repeat 1 58 0 682 201 7 54 chr3 98267638 98267916 -129256662 - L1PA8A LINE L1 -107 6024 5760 * 2406 125 59 3 chr3 98267897 98268461 -129256117 - L1PA8A LINE L1 -609 5522 4938 * 5037 152 12 3 chr3 98268460 98269314 -129255264 + L1PA8A LINE L1 4061 4921 -1225 275 219 14 14 chr3 98269802 98269875 -129254703 + (TG)n Simple_repeat Simple_repeat 2 74 0 189 147 0 0 chr3 98270555 98270589 -129253989 + (GGAA)n Simple_repeat Simple_repeat 4 37 0 23 0 0 0 chr3 98270874 98270897 -129253681 + AT_rich Low_complexity Low_complexity 1 23 0 1098 183 108 4 chr3 98271293 98271534 -129253044 + MLT2D LTR ERVL 5 270 -144 34 84 0 0 chr3 98271800 98271883 -129252695 + AT_rich Low_complexity Low_complexity 1 83 0 237 119 0 0 chr3 98272484 98272526 -129252052 + (GA)n Simple_repeat Simple_repeat 1 42 0 1414 213 227 18 chr3 98272690 98273140 -129251438 - MER90 LTR ERV1 0 614 71 244 264 88 22 chr3 98273265 98273356 -129251222 - LTR33 LTR ERVL -402 119 23 31 58 0 0 chr3 98273538 98273590 -129250988 + AT_rich Low_complexity Low_complexity 1 52 0 348 324 102 29 chr3 98273686 98274001 -129250577 + L2 LINE L2 2469 2806 -508 252 151 0 81 chr3 98275340 98275426 -129249152 + (TAAA)n Simple_repeat Simple_repeat 1 79 0 217 167 21 0 chr3 98275530 98275578 -129249000 + (TG)n Simple_repeat Simple_repeat 2 50 0 979 277 0 4 chr3 98275700 98275960 -129248618 - AluJo SINE Alu -12 300 42 360 216 0 0 chr3 98276096 98276198 -129248380 + (TA)n Simple_repeat Simple_repeat 1 102 0 22 0 0 0 chr3 98276745 98276767 -129247811 + AT_rich Low_complexity Low_complexity 1 22 0 218 354 62 9 chr3 98276872 98276985 -129247593 + L2 LINE L2 3195 3313 0 297 331 50 25 chr3 98277121 98277242 -129247336 + MIR3 SINE MIR 75 198 -10 185 62 0 31 chr3 98279915 98279947 -129244631 + (TTTTTA)n Simple_repeat Simple_repeat 6 36 0 277 341 0 0 chr3 98280265 98280350 -129244228 + CT-rich Low_complexity Low_complexity 2 86 0 * 303 303 25 0 chr3 98280325 98280447 -129244131 + (TCTA)n Simple_repeat Simple_repeat 2 126 0 290 87 22 0 chr3 98280462 98280508 -129244070 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 739 266 105 68 chr3 98280719 98281355 -129243223 - L1MC5 LINE L1 -282 7679 7020 6545 159 38 3 chr3 98281361 98282546 -129242032 - Tigger3b DNA MER2_type -5 1226 1 550 303 126 15 chr3 98282597 98282930 -129241648 - L1MC4 LINE L1 -986 7554 7185 1888 119 54 3 chr3 98283183 98283477 -129241101 - AluSp SINE Alu -4 309 1 2009 131 0 22 chr3 98283716 98284029 -129240549 - AluSx SINE Alu -6 306 1 390 285 109 5 chr3 98284178 98284399 -129240179 - L1MC4 LINE L1 -1849 6457 6214 403 251 58 100 chr3 98284630 98285009 -129239569 - L1MC4 LINE L1 -961 5683 5321 198 71 0 0 chr3 98285014 98285042 -129239536 + (TG)n Simple_repeat Simple_repeat 2 29 0 1154 241 93 29 chr3 98285068 98285565 -129239013 + LTR28 LTR ERV1 1 1232 -141 3270 279 72 44 chr3 98285601 98287545 -129237033 + LTR28-int LTR ERV1 1 2015 -4981 285 230 20 70 chr3 98287712 98287812 -129236766 + MER52A LTR ERV1 358 1181 -49 653 270 17 11 chr3 98287812 98287990 -129236588 + LTR28 LTR ERV1 1 179 -841 533 239 46 72 chr3 98288010 98288271 -129236307 + MER52A LTR ERV1 528 1232 -44 865 288 71 12 chr3 98288620 98289043 -129235535 - L1MC4 LINE L1 -1376 5268 4821 1311 320 83 27 chr3 98289105 98290935 -129233643 - L1MC4 LINE L1 -1976 4668 2736 317 302 50 17 chr3 98291004 98291305 -129233273 - L1MC4 LINE L1 -3968 2676 2366 361 217 5 54 chr3 98291352 98291536 -129233042 + (TA)n Simple_repeat Simple_repeat 1 175 0 329 203 25 43 chr3 98291578 98291741 -129232837 + (TA)n Simple_repeat Simple_repeat 2 161 0 876 294 87 39 chr3 98291747 98292462 -129232116 - L1MC4 LINE L1 -4482 2343 1444 680 253 109 0 chr3 98292680 98292882 -129231696 + MER58A DNA MER1_type 1 224 0 24 32 0 0 chr3 98293285 98293316 -129231262 + AT_rich Low_complexity Low_complexity 1 31 0 2000 135 0 0 chr3 98293390 98293672 -129230906 - AluSx SINE Alu -21 291 10 269 276 9 86 chr3 98294262 98294339 -129230239 - MIR SINE MIR -1 261 192 2441 24 41 0 chr3 98294339 98294630 -129229948 - AluY SINE Alu -8 303 1 269 276 9 86 chr3 98294630 98294657 -129229921 - MIR SINE MIR -70 192 165 1816 258 47 28 chr3 98294834 98295370 -129229208 - MER77 LTR ERV1 -4 601 56 24 0 0 0 chr3 98296869 98296893 -129227685 + AT_rich Low_complexity Low_complexity 1 24 0 666 202 40 0 chr3 98297040 98297213 -129227365 - L1MB4 LINE L1 0 6180 6001 22 56 0 0 chr3 98298055 98298091 -129226487 + AT_rich Low_complexity Low_complexity 1 36 0 30 0 0 0 chr3 98298347 98298377 -129226201 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr3 98298797 98298823 -129225755 + AT_rich Low_complexity Low_complexity 1 26 0 1980 129 0 3 chr3 98299045 98299332 -129225246 + AluSx SINE Alu 1 286 -26 333 261 57 0 chr3 98299335 98299423 -129225155 - L1MC4 LINE L1 -1339 6703 6611 339 147 9 18 chr3 98299438 98299547 -129225031 + (TA)n Simple_repeat Simple_repeat 2 109 0 686 284 10 39 chr3 98299577 98299781 -129224797 + MIR SINE MIR 65 262 0 1466 234 7 0 chr3 98301336 98301644 -129222934 + AluJo SINE Alu 3 312 0 737 97 0 9 chr3 98301658 98301771 -129222807 + (GGAA)n Simple_repeat Simple_repeat 3 114 0 287 318 130 16 chr3 98303663 98303855 -129220723 + L3 LINE CR1 1102 1315 -262 1953 134 48 39 chr3 98305156 98305429 -129219149 - L1PA14 LINE L1 -4 6157 5879 2168 146 43 3 chr3 98305429 98305778 -129218800 + THE1B LTR MaLR 2 364 0 1953 134 48 39 chr3 98305778 98305862 -129218716 - L1PA14 LINE L1 -282 5879 5797 36 0 0 0 chr3 98306475 98306511 -129218067 + AT_rich Low_complexity Low_complexity 1 36 0 592 336 19 0 chr3 98306938 98307149 -129217429 + MIR SINE MIR 17 231 -31 195 129 0 0 chr3 98307173 98307204 -129217374 + (TTA)n Simple_repeat Simple_repeat 1 31 0 3887 28 0 4 chr3 98307355 98307814 -129216764 - L1PA4 LINE L1 -1601 4545 4086 7251 38 0 1 chr3 98307814 98309401 -129215177 + L1PA4 LINE L1 4545 6157 0 246 125 0 0 chr3 98310518 98310558 -129214020 + L1MC1 LINE L1 6293 6332 -1 952 261 83 39 chr3 98310563 98310933 -129213645 + L1MDa LINE L1 180 731 -5809 1978 225 61 92 chr3 98310939 98311205 -129213373 + L1MDa LINE L1 819 1091 -5449 570 144 0 0 chr3 98311205 98311302 -129213276 - L1MA7 LINE L1 -14 6277 6181 1978 225 61 92 chr3 98311302 98311866 -129212712 + L1MDa LINE L1 1091 1624 -4916 4616 205 15 8 chr3 98311868 98312759 -129211819 + ERVL-D LTR ERVL 4364 5260 -504 319 236 57 19 chr3 98312831 98312937 -129211641 + ERVL-D LTR ERVL 5543 5652 -2 1204 219 44 14 chr3 98312939 98313259 -129211319 + MLT2D LTR ERVL 1 390 -7 3847 253 61 53 chr3 98313259 98313406 -129211172 - L1MB3 LINE L1 -252 6167 6023 1427 207 141 3 chr3 98313406 98313754 -129210824 - MSTD LTR MaLR 0 396 1 3847 253 61 53 chr3 98313754 98315096 -129209482 - L1MB3 LINE L1 -396 6023 4694 2215 131 17 6 chr3 98315096 98315447 -129209131 + THE1A LTR MaLR 1 355 0 10760 109 18 1 chr3 98315450 98317000 -129207578 + THE1A-int LTR MaLR 4 1580 0 2184 138 8 11 chr3 98317000 98317356 -129207222 + THE1A LTR MaLR 1 355 0 3847 253 61 53 chr3 98317356 98318163 -129206415 - L1MB3 LINE L1 -1725 4694 3854 1259 242 82 9 chr3 98318175 98318518 -129206060 - MLT1A2 LTR MaLR -6 368 1 845 271 18 18 chr3 98318518 98318798 -129205780 - L1MB3 LINE L1 -2530 3852 3573 1204 254 77 21 chr3 98318929 98319676 -129204902 - L1MB3 LINE L1 -4767 1617 772 2348 72 0 7 chr3 98319941 98320247 -129204331 - AluY SINE Alu -7 304 1 2154 124 0 3 chr3 98320276 98320590 -129203988 - AluSq SINE Alu 0 313 1 3089 224 35 75 chr3 98320732 98322033 -129202545 + L1MD1 LINE L1 4941 6177 -65 687 180 0 58 chr3 98322033 98322172 -129202406 - FLAM_C SINE Alu 0 133 3 3089 224 35 75 chr3 98322172 98322227 -129202351 + L1MD1 LINE L1 6177 6233 -9 29 47 0 0 chr3 98322278 98322321 -129202257 + AT_rich Low_complexity Low_complexity 1 43 0 22 35 0 0 chr3 98322349 98322378 -129202200 + AT_rich Low_complexity Low_complexity 1 29 0 25 75 0 0 chr3 98322665 98322718 -129201860 + AT_rich Low_complexity Low_complexity 1 53 0 2367 78 3 3 chr3 98322887 98323196 -129201382 + AluSp SINE Alu 1 309 -4 414 0 0 0 chr3 98324693 98324739 -129199839 + (TA)n Simple_repeat Simple_repeat 2 47 0 317 210 45 28 chr3 98324907 98325083 -129199495 + C-rich Low_complexity Low_complexity 2 180 0 320 237 0 18 chr3 98325183 98325352 -129199226 + G-rich Low_complexity Low_complexity 1 166 0 1688 140 7 15 chr3 98325678 98325949 -129198629 + AluSq SINE Alu 30 298 -15 399 270 191 13 chr3 98326962 98327192 -129197386 - MLT1F LTR MaLR -13 529 259 251 274 65 91 chr3 98327230 98327460 -129197118 - MLT1F LTR MaLR -356 234 11 26 0 0 0 chr3 98328620 98328646 -129195932 + AT_rich Low_complexity Low_complexity 1 26 0 264 309 0 0 chr3 98329225 98329322 -129195256 - L1MEc LINE L1 -6206 190 94 284 281 11 0 chr3 98329362 98329451 -129195127 - L1MEc LINE L1 -6299 97 8 44 56 0 0 chr3 98329502 98329574 -129195004 + AT_rich Low_complexity Low_complexity 1 72 0 477 248 31 23 chr3 98329657 98329786 -129194792 + MER31B LTR ERV1 1 130 -336 26 30 0 0 chr3 98329927 98329960 -129194618 + AT_rich Low_complexity Low_complexity 1 33 0 5264 154 132 21 chr3 98330024 98331165 -129193413 + MER52C LTR ERV1 12 1278 0 1315 238 139 2 chr3 98332261 98332672 -129191906 - MLT1C LTR MaLR 0 467 1 6049 84 14 2 chr3 98333879 98334714 -129189864 + L1PA8 LINE L1 5326 6170 -2 2126 117 0 0 chr3 98335459 98335757 -129188821 + AluSg SINE Alu 2 299 -11 575 180 0 10 chr3 98335774 98335906 -129188672 - AluSg/x SINE Alu 0 313 183 218 348 51 29 chr3 98337444 98337582 -129186996 + MER5A DNA MER1_type 48 188 -1 26 0 0 0 chr3 98337640 98337666 -129186912 + AT_rich Low_complexity Low_complexity 1 26 0 371 293 119 41 chr3 98338151 98338564 -129186014 - L1MC/D LINE L1 -2032 5776 5332 195 114 0 0 chr3 98338594 98338629 -129185949 + (CA)n Simple_repeat Simple_repeat 2 36 0 375 289 0 19 chr3 98339829 98339933 -129184645 + MIR SINE MIR 161 262 0 388 285 29 29 chr3 98340388 98340525 -129184053 - MIR SINE MIR -79 183 47 305 309 36 0 chr3 98341250 98341334 -129183244 + L2 LINE L2 3191 3277 -36 23 0 0 0 chr3 98343680 98343703 -129180875 + AT_rich Low_complexity Low_complexity 1 23 0 1921 244 58 51 chr3 98346246 98346869 -129177709 + MER82 DNA MER2_type 21 647 -6 29 60 0 0 chr3 98347084 98347134 -129177444 + AT_rich Low_complexity Low_complexity 1 50 0 248 111 22 0 chr3 98347458 98347503 -129177075 + (CA)n Simple_repeat Simple_repeat 2 47 0 21 36 0 0 chr3 98347574 98347602 -129176976 + AT_rich Low_complexity Low_complexity 1 28 0 1121 300 163 9 chr3 98347834 98348374 -129176204 + L2 LINE L2 2350 2972 -342 2577 45 0 3 chr3 98348526 98348878 -129175700 - AluY SINE Alu 0 351 1 612 208 82 22 chr3 98348944 98349175 -129175403 + Charlie2 DNA MER1_type 2181 2425 -437 1526 189 28 34 chr3 98349368 98349691 -129174887 + MLT2C2 LTR ERVL 2 322 -142 240 141 78 0 chr3 98349671 98349735 -129174843 - MER109 Unknown Unknown -1383 1049 981 * 522 43 0 0 chr3 98351247 98351316 -129173262 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 234 0 0 0 chr3 98351322 98351348 -129173230 + (CA)n Simple_repeat Simple_repeat 1 26 0 1915 179 64 17 chr3 98351995 98352403 -129172175 - MSTB1 LTR MaLR -2 430 4 40 0 0 0 chr3 98352718 98352758 -129171820 + AT_rich Low_complexity Low_complexity 1 40 0 733 294 160 33 chr3 98355443 98355892 -129168686 - MER101B LTR ERV1 -39 531 26 1200 308 85 22 chr3 98457459 98458221 -129066357 - L1MC4 LINE L1 -398 7644 6835 1533 207 18 49 chr3 98458230 98458571 -129066007 + MLT2D LTR ERVL 9 395 -69 2286 79 0 20 chr3 98458571 98458875 -129065703 - AluSq SINE Alu -15 298 1 1533 207 18 49 chr3 98458875 98458909 -129065669 + MLT2D LTR ERVL 395 429 -35 229 159 114 0 chr3 98458939 98458983 -129065595 + MLT2D LTR ERVL 416 464 0 402 208 62 42 chr3 98458983 98459127 -129065451 - L1MC4a LINE L1 -1056 6752 6606 11325 71 11 3 chr3 98459865 98461420 -129063158 - L1P LINE L1 -1471 4675 3108 22 56 0 0 chr3 98461537 98461573 -129063005 + AT_rich Low_complexity Low_complexity 1 36 0 34 55 0 0 chr3 98461833 98461888 -129062690 + AT_rich Low_complexity Low_complexity 1 55 0 1057 319 73 28 chr3 98462899 98463406 -129061172 + L2 LINE L2 2215 2744 -570 309 306 103 72 chr3 98463451 98463925 -129060653 + MLT1J LTR MaLR 5 493 -18 623 178 41 27 chr3 98463992 98464138 -129060440 - MLT1C LTR MaLR 0 467 320 520 289 128 5 chr3 98464151 98464369 -129060209 + MLT1D LTR MaLR 261 505 0 355 331 21 0 chr3 98464590 98464732 -129059846 - L1 LINE L1 -1135 5011 4867 1099 246 56 57 chr3 98466771 98467172 -129057406 + LTR41 LTR ERVL 376 793 -2 468 281 37 0 chr3 98467344 98467479 -129057099 + MLT1E LTR MaLR 391 530 -63 28 0 0 0 chr3 98468613 98468641 -129055937 + AT_rich Low_complexity Low_complexity 1 28 0 4496 187 74 60 chr3 98468756 98470181 -129054397 + MER41-int LTR ERV1 604 2007 -3784 2179 102 0 16 chr3 98470181 98470486 -129054092 + AluSq SINE Alu 2 301 -12 4496 187 74 60 chr3 98470486 98471394 -129053184 + MER41-int LTR ERV1 2007 3789 -2002 685 228 39 113 chr3 98471513 98471948 -129052630 - L1MC4a LINE L1 -1155 6653 6251 201 129 0 0 chr3 98472113 98472144 -129052434 + (TG)n Simple_repeat Simple_repeat 2 32 0 487 321 102 58 chr3 98472331 98472975 -129051603 - L1 LINE L1 -1198 4948 4276 358 298 62 19 chr3 98472988 98473149 -129051429 - L1 LINE L1 -3217 2929 2762 4831 104 1 14 chr3 98473149 98473849 -129050729 - LTR8 LTR ERV1 0 691 1 11252 89 13 38 chr3 98473849 98475587 -129048991 - HUERS-P1 LTR ERV1 0 6263 4569 4890 47 3 8 chr3 98477313 98477934 -129046644 - L1PA5 LINE L1 0 6154 5537 592 205 9 0 chr3 98477940 98478052 -129046526 - FLAM_C SINE Alu -27 116 4 747 208 14 0 chr3 98478243 98478387 -129046191 - MSTC LTR MaLR -80 348 203 2377 119 8 0 chr3 98478409 98478763 -129045815 - L1PB1 LINE L1 -2 6149 5793 252 100 0 0 chr3 98478763 98478803 -129045775 + (TG)n Simple_repeat Simple_repeat 2 41 0 414 0 0 0 chr3 98478823 98478869 -129045709 + (TAGA)n Simple_repeat Simple_repeat 4 49 0 308 100 0 0 chr3 98478870 98478920 -129045658 - L1P5 LINE L1 -319 5832 5783 255 170 0 0 chr3 98478921 98478968 -129045610 + (TATATG)n Simple_repeat Simple_repeat 4 50 0 322 106 0 13 chr3 98478968 98479029 -129045549 - L1M4 LINE L1 -318 5833 5783 182 108 54 0 chr3 98479030 98479067 -129045511 + (TATATG)n Simple_repeat Simple_repeat 2 40 0 267 77 0 0 chr3 98479067 98479106 -129045472 - L1P5 LINE L1 -318 5833 5795 225 65 0 0 chr3 98479106 98479137 -129045441 + (TG)n Simple_repeat Simple_repeat 2 32 0 315 140 0 0 chr3 98479174 98479224 -129045354 - L1P5 LINE L1 -322 5832 5783 246 156 0 0 chr3 98479224 98479269 -129045309 + (TATATG)n Simple_repeat Simple_repeat 5 49 0 356 85 0 29 chr3 98479269 98479336 -129045242 - L1PB2 LINE L1 -318 5833 5782 263 219 0 12 chr3 98479347 98479429 -129045149 + (TA)n Simple_repeat Simple_repeat 1 81 0 9276 220 67 27 chr3 98479432 98482575 -129042003 - L1PB2 LINE L1 -361 5790 2503 624 222 0 30 chr3 98482575 98482710 -129041868 + FLAM_C SINE Alu 1 131 -2 9276 220 67 27 chr3 98482710 98482858 -129041720 - L1PB2 LINE L1 -3648 2503 2362 298 333 56 56 chr3 98483980 98484193 -129040385 - MLT1I LTR MaLR -2 407 195 807 239 0 16 chr3 98484275 98484463 -129040115 + MER5A DNA MER1_type 5 189 0 1252 269 91 36 chr3 98486022 98486494 -129038084 + LTR40a LTR ERVL 8 505 -14 317 315 88 9 chr3 98486509 98486725 -129037853 + L1MC4a LINE L1 5694 5926 -1882 3085 264 72 64 chr3 98486858 98487536 -129037042 + L1MDb LINE L1 199 870 -5673 2208 116 3 0 chr3 98487536 98487837 -129036741 - AluSp SINE Alu -11 302 1 3085 264 72 64 chr3 98487837 98488504 -129036074 + L1MDb LINE L1 870 1555 -4988 2553 205 47 6 chr3 98488539 98489047 -129035531 - MER44D DNA MER2_type -1 604 204 843 235 50 67 chr3 98489213 98489617 -129034961 + L1MDb LINE L1 2235 2631 -3909 1569 260 50 39 chr3 98489672 98490560 -129034018 + L1MDb LINE L1 2768 3743 -2797 2122 150 83 10 chr3 98492705 98493104 -129031474 + MSTA LTR MaLR 1 428 0 243 0 0 0 chr3 98493162 98493189 -129031389 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 21 36 0 0 chr3 98493194 98493222 -129031356 + AT_rich Low_complexity Low_complexity 1 28 0 403 309 16 52 chr3 98493376 98493455 -129031123 - MIR SINE MIR -25 237 157 2180 92 3 0 chr3 98493455 98493757 -129030821 - AluSg SINE Alu 0 303 1 403 309 16 52 chr3 98493757 98493867 -129030711 - MIR SINE MIR -105 157 54 222 37 0 0 chr3 98494478 98494505 -129030073 + (CATA)n Simple_repeat Simple_repeat 4 30 0 23 0 0 0 chr3 98494627 98494650 -129029928 + AT_rich Low_complexity Low_complexity 1 23 0 1120 160 0 20 chr3 98494817 98495061 -129029517 - L1 LINE L1 -1733 4413 4175 2619 165 27 8 chr3 98495067 98495582 -129028996 + L1 LINE L1 4469 4993 -1153 22 0 0 0 chr3 98497284 98497306 -129027272 + AT_rich Low_complexity Low_complexity 1 22 0 2089 102 18 0 chr3 98497472 98497757 -129026821 + AluSg1 SINE Alu 3 292 -17 1142 309 75 15 chr3 98497843 98498564 -129026014 + L1MDb LINE L1 4003 4766 -1774 337 113 15 68 chr3 98498595 98498728 -129025850 + (TA)n Simple_repeat Simple_repeat 1 126 0 245 0 21 62 chr3 98498847 98498895 -129025683 + (TA)n Simple_repeat Simple_repeat 1 46 0 24 32 0 0 chr3 98499737 98499768 -129024810 + AT_rich Low_complexity Low_complexity 1 31 0 234 200 12 24 chr3 98501249 98501334 -129023244 + GA-rich Low_complexity Low_complexity 2 85 0 24 85 0 0 chr3 98501395 98501454 -129023124 + AT_rich Low_complexity Low_complexity 1 59 0 301 260 16 32 chr3 98501691 98501814 -129022764 + CT-rich Low_complexity Low_complexity 3 123 0 597 200 39 23 chr3 98502604 98502734 -129021844 - FLAM_A SINE Alu 0 133 2 708 216 93 0 chr3 98504772 98504934 -129019644 - MER58B DNA MER1_type 0 341 165 1753 176 17 64 chr3 98504934 98505343 -129019235 - MLT1B LTR MaLR 0 390 1 22 0 0 0 chr3 98505523 98505545 -129019033 + AT_rich Low_complexity Low_complexity 1 22 0 2348 180 26 43 chr3 98506055 98506633 -129017945 + L1MA4 LINE L1 5731 6298 -2 381 260 156 45 chr3 98506675 98507444 -129017134 - Charlie2 DNA MER1_type -31 2831 1978 21 0 0 0 chr3 98507506 98507527 -129017051 + AT_rich Low_complexity Low_complexity 1 21 0 203 173 19 39 chr3 98507909 98507961 -129016617 + (TATATG)n Simple_repeat Simple_repeat 3 53 0 22 56 0 0 chr3 98510208 98510244 -129014334 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 98510453 98510474 -129014104 + AT_rich Low_complexity Low_complexity 1 21 0 1671 254 41 13 chr3 98510602 98511158 -129013420 + L1ME2 LINE L1 5531 6102 -62 455 111 0 22 chr3 98511160 98511250 -129013328 + (TTCC)n Simple_repeat Simple_repeat 3 90 0 2804 272 67 46 chr3 98511330 98512563 -129012015 + L1MC4 LINE L1 6471 7729 -313 244 171 53 26 chr3 98512568 98512644 -129011934 + L1MC4 LINE L1 7962 8039 -3 2125 114 3 0 chr3 98512846 98513143 -129011435 + AluSc SINE Alu 1 298 -11 185 65 32 0 chr3 98513372 98513403 -129011175 + (TA)n Simple_repeat Simple_repeat 2 33 0 27 29 0 0 chr3 98515639 98515673 -129008905 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr3 98516084 98516111 -129008467 + AT_rich Low_complexity Low_complexity 1 27 0 27 29 0 0 chr3 98517084 98517118 -129007460 + AT_rich Low_complexity Low_complexity 1 34 0 31 0 0 0 chr3 98517328 98517359 -129007219 + AT_rich Low_complexity Low_complexity 1 31 0 715 273 59 78 chr3 98517474 98517685 -129006893 + MLT1E3 LTR MaLR 1 203 -421 1628 189 23 7 chr3 98517685 98517987 -129006591 + AluSx SINE Alu 1 307 -5 715 273 59 78 chr3 98517987 98518149 -129006429 + MLT1E3 LTR MaLR 203 367 -257 1336 212 57 17 chr3 98518157 98518267 -129006311 + L1MA4A LINE L1 5912 6016 -287 1884 133 78 26 chr3 98518267 98518613 -129005965 + THE1B LTR MaLR 1 364 0 1336 212 57 17 chr3 98518613 98518851 -129005727 + L1MA4A LINE L1 6016 6274 -29 33 29 0 0 chr3 98518865 98518900 -129005678 + AT_rich Low_complexity Low_complexity 1 35 0 4583 182 61 10 chr3 98519560 98520603 -129003975 - L1MA8 LINE L1 0 6291 5191 10819 213 33 36 chr3 98520605 98521318 -129003260 + L1 LINE L1 2201 2915 -3231 20085 62 1 6 chr3 98521318 98524725 -128999853 + L1PA5 LINE L1 2736 6146 -8 10819 213 33 36 chr3 98524725 98524750 -128999828 + L1 LINE L1 2915 2939 -3207 1985 96 52 0 chr3 98524750 98525021 -128999557 + AluSp SINE Alu 3 287 -26 10819 213 33 36 chr3 98525021 98527280 -128997298 + L1 LINE L1 2939 5190 -956 294 214 0 0 chr3 98527503 98527587 -128996991 + GA-rich Low_complexity Low_complexity 1 84 0 23 0 0 0 chr3 98528231 98528254 -128996324 + AT_rich Low_complexity Low_complexity 1 23 0 1693 210 75 27 chr3 98528728 98529171 -128995407 - MLT1C LTR MaLR -2 465 2 205 167 9 176 chr3 98530188 98530296 -128994282 + L2 LINE L2 2212 2301 -1013 193 363 79 38 chr3 98530297 98530592 -128993986 + L2 LINE L2 2432 2744 -570 3092 19 14 0 chr3 98530592 98530956 -128993622 - L1PA4 LINE L1 -2 6153 5785 193 363 79 38 chr3 98530956 98531002 -128993576 + L2 LINE L2 2744 2787 -527 2017 110 7 36 chr3 98531024 98531333 -128993245 + AluSq SINE Alu 1 300 -13 1917 214 69 12 chr3 98531365 98532026 -128992552 - L1MC/D LINE L1 -872 5274 4712 381 356 61 49 chr3 98532028 98532442 -128992136 + L2 LINE L2 2618 3043 -229 3353 146 36 35 chr3 98532493 98532994 -128991584 - Tigger3(Golem) DNA MER2_type 0 3028 2524 1812 147 0 13 chr3 98532994 98533294 -128991284 - AluSx SINE Alu -16 296 1 3353 146 36 35 chr3 98533294 98533478 -128991100 - Tigger3(Golem) DNA MER2_type -504 2524 2342 648 231 45 0 chr3 98533479 98533613 -128990965 - Tigger3(Golem) DNA MER2_type -2888 141 2 459 296 216 8 chr3 98533884 98534198 -128990380 + L2 LINE L2 2701 3074 -239 30 59 0 0 chr3 98534554 98534605 -128989973 + AT_rich Low_complexity Low_complexity 1 51 0 555 140 17 45 chr3 98536313 98536491 -128988087 + GA-rich Low_complexity Low_complexity 1 173 0 224 735 0 0 chr3 98536604 98536740 -128987838 + (TG)n Simple_repeat Simple_repeat 2 137 0 4108 270 116 9 chr3 98537595 98538731 -128985847 + L1PA13 LINE L1 1 1258 -5529 6960 208 22 72 chr3 98538734 98541394 -128983184 + L1PA13 LINE L1 1396 3866 -2931 6287 195 21 33 chr3 98541530 98544409 -128980169 + L1PA13 LINE L1 3952 6814 0 321 26 0 0 chr3 98545164 98545202 -128979376 + (TG)n Simple_repeat Simple_repeat 1 38 0 1906 128 7 4 chr3 98545202 98545476 -128979102 - AluSx SINE Alu -33 279 5 546 300 75 73 chr3 98545683 98546136 -128978442 - LTR16A1 LTR ERVL -3 454 1 219 217 0 0 chr3 98547288 98547348 -128977230 + (TA)n Simple_repeat Simple_repeat 1 60 0 261 310 142 9 chr3 98548052 98548165 -128976413 - MIR SINE MIR -70 192 65 577 236 50 6 chr3 98548268 98548429 -128976149 - MIR SINE MIR -24 238 71 2283 49 0 7 chr3 98548432 98548746 -128975832 - AluY SINE Alu 0 312 1 228 273 0 0 chr3 98550110 98550165 -128974413 + (TA)n Simple_repeat Simple_repeat 2 56 0 313 143 31 26 chr3 98550433 98550511 -128974067 - L1MA5A LINE L1 -23 6280 6190 * 908 190 20 45 chr3 98550509 98550601 -128973977 - L1MA4A LINE L1 -181 6122 6029 3153 167 6 8 chr3 98550601 98551127 -128973451 - MER1A DNA MER1_type 0 527 3 908 190 20 45 chr3 98551127 98551281 -128973297 - L1MA4A LINE L1 -274 6029 5882 2633 137 7 31 chr3 98551458 98551854 -128972724 + MER57B LTR ERV1 1 387 -47 2226 69 0 21 chr3 98551854 98552171 -128972407 - AluY SINE Alu 0 311 1 2633 137 7 31 chr3 98552171 98552218 -128972360 + MER57B LTR ERV1 387 434 0 2086 150 30 0 chr3 98552218 98552551 -128972027 + MER57B-int LTR ERV1 1 343 -7194 225 204 0 0 chr3 98552568 98552622 -128971956 - L1M4 LINE L1 -3155 3227 3174 192 40 0 0 chr3 98552669 98552694 -128971884 + (TTA)n Simple_repeat Simple_repeat 1 25 0 1919 42 0 0 chr3 98552697 98552933 -128971645 - L1PA4 LINE L1 -16 6139 5904 388 309 73 73 chr3 98553197 98553511 -128971067 + L1M4 LINE L1 4720 5033 -1113 256 304 40 0 chr3 98553604 98553729 -128970849 + L1M4 LINE L1 5060 5189 -957 207 0 0 0 chr3 98553875 98553898 -128970680 + (TA)n Simple_repeat Simple_repeat 1 23 0 298 243 21 25 chr3 98553915 98554095 -128970483 + L1MCa LINE L1 2006 5817 -2505 1185 286 30 9 chr3 98554096 98554425 -128970153 + MER70B LTR ERVL 110 445 -133 714 166 0 11 chr3 98554461 98554616 -128969962 - L1M4 LINE L1 -4631 1672 1119 2746 193 40 25 chr3 98554785 98554918 -128969660 - L1M4 LINE L1 -5267 1117 987 2127 78 14 0 chr3 98554918 98555199 -128969379 - AluY SINE Alu -26 285 1 2746 193 40 25 chr3 98555199 98555733 -128968845 - L1M4 LINE L1 -5397 987 440 1596 92 13 0 chr3 98555837 98556075 -128968503 - HUERS-P1 LTR ERV1 -1828 4435 4195 * 24075 112 20 25 chr3 98556070 98558198 -128966380 - HUERS-P1 LTR ERV1 -2519 3744 1640 1935 129 11 3 chr3 98558198 98558484 -128966094 - AluSq SINE Alu -25 288 1 24075 112 20 25 chr3 98558484 98560117 -128964461 - HUERS-P1 LTR ERV1 -4623 1640 1 4815 103 18 3 chr3 98560117 98560798 -128963780 - LTR8 LTR ERV1 0 691 1 23 54 0 0 chr3 98560837 98560874 -128963704 + AT_rich Low_complexity Low_complexity 1 37 0 1489 219 81 65 chr3 98561926 98562469 -128962109 + MER34B LTR ERV1 11 562 -3 226 315 40 54 chr3 98562473 98562622 -128961956 + MIR SINE MIR 70 216 -46 27 29 0 0 chr3 98562786 98562820 -128961758 + AT_rich Low_complexity Low_complexity 1 34 0 285 319 83 32 chr3 98563199 98563356 -128961222 + MIR3 SINE MIR 40 204 -4 216 216 0 0 chr3 98564208 98564259 -128960319 + (CA)n Simple_repeat Simple_repeat 2 52 0 25 31 0 0 chr3 98564386 98564418 -128960160 + AT_rich Low_complexity Low_complexity 1 32 0 868 140 0 7 chr3 98565500 98565636 -128958942 + AluSq/x SINE Alu 3 137 -176 7813 131 37 1 chr3 98565747 98566926 -128957652 + MER57B-int LTR ERV1 5925 7146 -391 628 160 15 30 chr3 98566926 98567057 -128957521 + LTR54B LTR ERV1 3 131 -367 1472 87 135 0 chr3 98567057 98567287 -128957291 + MER57B-int LTR ERV1 7277 7537 0 2575 154 14 0 chr3 98567290 98567718 -128956860 + MER57B LTR ERV1 1 434 0 669 181 7 7 chr3 98568021 98568159 -128956419 + L1PA16 LINE L1 6028 6165 -1 195 268 77 108 chr3 98568531 98568725 -128955853 + L2 LINE L2 3121 3308 -5 198 0 0 0 chr3 98568925 98568947 -128955631 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 4718 131 51 0 chr3 98568950 98569734 -128954844 - L1PB2 LINE L1 -13 6138 5315 219 166 32 16 chr3 98569760 98569894 -128954684 + (TA)n Simple_repeat Simple_repeat 1 136 0 1375 218 47 0 chr3 98569896 98570171 -128954407 - AluJo SINE Alu -23 289 2 21 57 0 0 chr3 98570271 98570306 -128954272 + AT_rich Low_complexity Low_complexity 1 35 0 576 285 70 70 chr3 98571250 98571667 -128952911 + L2 LINE L2 2022 2438 -876 5059 213 25 16 chr3 98571709 98573276 -128951302 - L1MC1 LINE L1 0 6333 4751 275 203 14 0 chr3 98573500 98573569 -128951009 + GA-rich Low_complexity Low_complexity 2 71 0 648 350 103 18 chr3 98573924 98574740 -128949838 - L2 LINE L2 -6 3307 2425 210 367 22 0 chr3 98574842 98574932 -128949646 + MIR SINE MIR 171 262 0 24 0 0 0 chr3 98575991 98576015 -128948563 + AT_rich Low_complexity Low_complexity 1 24 0 2155 228 55 16 chr3 98576236 98576797 -128947781 - L1MD2 LINE L1 0 6359 5777 726 238 44 93 chr3 98576948 98577335 -128947243 - L1ME3A LINE L1 0 6170 5803 1233 286 62 82 chr3 98577350 98578856 -128945722 - L1ME3A LINE L1 -1326 4820 3344 657 271 52 80 chr3 98580582 98580754 -128943824 + MLT1E LTR MaLR 5 164 -429 1864 153 0 35 chr3 98580754 98581068 -128943510 + AluJb SINE Alu 2 304 -8 657 271 52 80 chr3 98581068 98581242 -128943336 + MLT1E LTR MaLR 164 341 -252 6504 31 0 9 chr3 98581258 98582035 -128942543 - L1PA3 LINE L1 0 6155 5386 595 277 38 42 chr3 98582063 98582276 -128942302 + MLT1E LTR MaLR 377 588 -5 202 26 51 51 chr3 98582409 98582448 -128942130 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 1239 97 49 0 chr3 98582766 98582951 -128941627 - MER51B LTR ERV1 0 377 184 488 145 96 0 chr3 98582950 98583033 -128941545 - MER51A LTR ERV1 -102 532 442 * 1413 141 35 67 chr3 98583032 98583316 -128941262 - MER51B LTR ERV1 -102 275 1 2239 148 0 3 chr3 98583316 98583661 -128940917 - MER51B-int LTR ERV1 0 7816 7473 527 200 52 37 chr3 98583662 98583797 -128940781 - LTR54B LTR ERV1 -357 141 5 3721 117 52 2 chr3 98583797 98584360 -128940218 - MER51B-int LTR ERV1 -387 7150 6560 897 81 32 0 chr3 98584358 98584481 -128940097 - MER51B-int LTR ERV1 -1599 5938 5812 * 1035 102 18 0 chr3 98584480 98584646 -128939932 - MER51B-int LTR ERV1 -5154 2662 2494 956 185 4 48 chr3 98584615 98584842 -128939736 - MER51B-int LTR ERV1 -7108 1012 796 * 1424 120 0 5 chr3 98584880 98585096 -128939482 - AluY SINE Alu 0 311 97 5741 172 19 31 chr3 98585096 98586206 -128938372 - MER51B-int LTR ERV1 -6720 1096 1 2282 112 10 48 chr3 98586206 98586598 -128937980 - MER51B LTR ERV1 0 377 1 578 157 0 29 chr3 98586836 98586938 -128937640 - MLT1A2 LTR MaLR -13 361 263 434 278 32 0 chr3 98586978 98587104 -128937474 - MLT1A2 LTR MaLR -233 141 12 1984 187 33 64 chr3 98587154 98587699 -128936879 - L1MA9 LINE L1 -3 6309 5782 841 276 85 39 chr3 98587761 98588195 -128936383 + MSTB2 LTR MaLR 1 454 -3 251 292 14 0 chr3 98588505 98588577 -128936001 + Tigger7 DNA MER2_type 155 227 -2260 446 190 20 60 chr3 98588587 98588687 -128935891 + Tigger7 DNA MER2_type 2384 2479 -8 9032 200 19 11 chr3 98588735 98589401 -128935177 + L1MA8 LINE L1 3363 4022 -2269 7385 21 0 58 chr3 98589401 98590735 -128933843 + L1PA3 LINE L1 4872 6154 -1 9032 200 19 11 chr3 98590735 98592534 -128932044 + L1MA8 LINE L1 4022 5848 -443 6887 65 6 3 chr3 98592577 98593476 -128931102 - L1PA7 LINE L1 0 6154 5254 6706 65 8 8 chr3 98592596 98593571 -128931007 - L1PA7 LINE L1 -19 6135 5158 634 236 13 0 chr3 98594404 98594583 -128929995 + L1 LINE L1 4189 4369 -1777 1474 177 15 0 chr3 98594588 98594859 -128929719 + L1PA16 LINE L1 5883 6157 -9 310 244 58 0 chr3 98594869 98594955 -128929623 - L1MC4a LINE L1 -1105 6703 6613 940 117 0 7 chr3 98595228 98595373 -128929205 + AluSg/x SINE Alu 167 310 -2 1878 128 62 0 chr3 98596275 98596563 -128928015 + AluSp SINE Alu 1 306 -7 701 148 8 31 chr3 98597908 98598036 -128926542 - FLAM_C SINE Alu -8 125 1 425 213 12 0 chr3 98598388 98598468 -128926110 - Tigger7 DNA MER2_type 0 2491 2411 278 196 0 18 chr3 98598470 98598526 -128926052 + Tigger5 DNA MER2_type 1 55 -2268 265 235 0 118 chr3 98598536 98598621 -128925957 + Tigger5 DNA MER2_type 2246 2320 -3 756 106 131 50 chr3 98598624 98598784 -128925794 - Tigger7 DNA MER2_type -81 2410 2238 * 1029 196 6 0 chr3 98598783 98598962 -128925616 - Tigger7 DNA MER2_type -2231 256 77 29 0 0 0 chr3 98599152 98599181 -128925397 + AT_rich Low_complexity Low_complexity 1 29 0 1519 123 0 14 chr3 98599564 98599784 -128924794 - AluSq SINE Alu -96 217 1 25 83 0 0 chr3 98599926 98599986 -128924592 + AT_rich Low_complexity Low_complexity 1 60 0 351 0 0 0 chr3 98601093 98601132 -128923446 + (CA)n Simple_repeat Simple_repeat 2 40 0 835 328 45 12 chr3 98601150 98601568 -128923010 + L1MEc LINE L1 130 561 -5835 * 1605 281 66 24 chr3 98601549 98602431 -128922147 + L1M4 LINE L1 3287 4205 -1941 1750 94 12 0 chr3 98602553 98602798 -128921780 - L1P LINE L1 -5885 261 14 * 21994 64 6 1 chr3 98602792 98605631 -128918947 + L1P LINE L1 226 3079 -3067 5622 194 24 16 chr3 98705682 98706771 -128817807 + L1M1 LINE L1 725 1821 -5744 236 184 0 0 chr3 98706873 98706922 -128817656 + HSATII Satellite Satellite 27 75 -95 968 116 3 19 chr3 98706952 98707274 -128817304 + HSATII Satellite Satellite 1 316 0 1110 124 12 8 chr3 98707301 98710830 -128813748 + HSATII Satellite Satellite 1 3543 0 1248 116 12 7 chr3 98710861 98711663 -128812915 + HSATII Satellite Satellite 1 805 -72 756 143 0 0 chr3 98711682 98711822 -128812756 + HSATII Satellite Satellite 17 156 -14 794 133 13 0 chr3 98711852 98712010 -128812568 + HSATII Satellite Satellite 1 160 -10 1142 122 6 5 chr3 98712046 98712593 -128811985 + HSATII Satellite Satellite 1 547 0 887 135 12 0 chr3 98712616 98712871 -128811707 + HSATII Satellite Satellite 1 258 -7 962 145 2 7 chr3 98712900 98713327 -128811251 + HSATII Satellite Satellite 1 425 0 1080 101 0 0 chr3 98713354 98713523 -128811055 + HSATII Satellite Satellite 2 170 0 911 116 12 9 chr3 98713553 98713839 -128810739 + HSATII Satellite Satellite 1 286 0 1043 116 8 8 chr3 98713866 98714257 -128810321 + HSATII Satellite Satellite 1 391 0 1142 127 10 9 chr3 98714303 98717001 -128807577 + HSATII Satellite Satellite 1 2698 -7 1128 124 8 12 chr3 98717030 98717969 -128806609 + HSATII Satellite Satellite 1 935 0 1043 116 8 8 chr3 98717996 98718387 -128806191 + HSATII Satellite Satellite 1 391 0 980 129 6 15 chr3 98718433 98719678 -128804900 + HSATII Satellite Satellite 1 1233 0 879 138 21 5 chr3 98719704 98720278 -128804300 + HSATII Satellite Satellite 1 583 -2 1238 122 10 12 chr3 98720306 98724786 -128799792 + HSATII Satellite Satellite 1 4470 0 1000 102 14 21 chr3 98724812 98725230 -128799348 + HSATII Satellite Satellite 1 415 0 519 112 0 0 chr3 98725261 98725350 -128799228 + HSATII Satellite Satellite 32 120 -50 1163 131 13 2 chr3 98725454 98726821 -128797757 + HSATII Satellite Satellite 1 1381 -102 989 122 3 19 chr3 98726884 98727206 -128797372 + HSATII Satellite Satellite 1 316 0 1110 119 12 7 chr3 98727233 98728303 -128796275 + HSATII Satellite Satellite 1 1074 0 1131 125 11 10 chr3 98728326 98730782 -128793796 + HSATII Satellite Satellite 1 2458 0 1227 121 11 10 chr3 98730813 98731774 -128792804 + HSATII Satellite Satellite 1 961 -14 794 133 13 0 chr3 98731804 98731962 -128792616 + HSATII Satellite Satellite 1 160 -10 1142 118 8 4 chr3 98731998 98732823 -128791755 + HSATII Satellite Satellite 1 828 -7 1086 123 10 12 chr3 98732845 98733791 -128790787 + HSATII Satellite Satellite 1 944 0 1043 122 8 8 chr3 98733818 98734209 -128790369 + HSATII Satellite Satellite 1 391 0 960 117 0 13 chr3 98734249 98735431 -128789147 + HSATII Satellite Satellite 1 1166 -18 1000 124 16 15 chr3 98735443 98736817 -128787761 + HSATII Satellite Satellite 1 1375 0 1107 121 12 7 chr3 98736848 98737644 -128786934 + HSATII Satellite Satellite 1 799 -68 840 137 0 0 chr3 98737659 98737812 -128786766 + HSATII Satellite Satellite 17 169 -1 686 158 13 0 chr3 98737839 98737997 -128786581 + HSATII Satellite Satellite 1 160 -10 1184 120 7 4 chr3 98738033 98738913 -128785665 + HSATII Satellite Satellite 1 883 -102 968 126 3 19 chr3 98738976 98739298 -128785280 + HSATII Satellite Satellite 1 316 0 1131 122 10 8 chr3 98739325 98742957 -128781621 + HSATII Satellite Satellite 1 3640 0 1227 121 11 10 chr3 98742988 98743949 -128780629 + HSATII Satellite Satellite 1 961 -14 827 127 13 0 chr3 98743979 98744137 -128780441 + HSATII Satellite Satellite 1 160 -10 1184 112 7 4 chr3 98744173 98745053 -128779525 + HSATII Satellite Satellite 1 883 -102 989 109 2 21 chr3 98745091 98745438 -128779140 + HSATII Satellite Satellite 1 340 0 1077 111 15 6 chr3 98745465 98745947 -128778631 + HSATII Satellite Satellite 1 486 0 1031 119 8 8 chr3 98745974 98746365 -128778213 + HSATII Satellite Satellite 1 391 0 980 125 7 16 chr3 98746411 98747843 -128776735 + HSATII Satellite Satellite 1 1419 -81 892 119 21 9 chr3 98747873 98748208 -128776370 + HSATII Satellite Satellite 1 339 0 1143 130 5 6 chr3 98748234 98750006 -128774572 + HSATII Satellite Satellite 1 1770 0 183 132 44 29 chr3 98750029 98750097 -128774481 + (CATTC)n Satellite Satellite 2 70 0 991 122 18 10 chr3 98750107 98751330 -128773248 + HSATII Satellite Satellite 1 1232 0 1194 116 12 7 chr3 98751361 98752167 -128772411 + HSATII Satellite Satellite 1 809 -68 744 143 0 0 chr3 98752182 98752322 -128772256 + HSATII Satellite Satellite 17 156 -14 761 139 13 0 chr3 98752352 98752510 -128772068 + HSATII Satellite Satellite 1 160 -10 1139 120 7 4 chr3 98752546 98753426 -128771152 + HSATII Satellite Satellite 1 883 -102 989 116 3 19 chr3 98753489 98753811 -128770767 + HSATII Satellite Satellite 1 316 0 1110 121 15 6 chr3 98753838 98754320 -128770258 + HSATII Satellite Satellite 1 486 0 1110 129 9 10 chr3 98754346 98756999 -128767579 + HSATII Satellite Satellite 1 2650 0 1000 102 14 21 chr3 98757025 98757443 -128767135 + HSATII Satellite Satellite 1 415 0 1068 131 3 5 chr3 98757474 98759652 -128764926 + HSATII Satellite Satellite 1 2172 -1 908 125 23 7 chr3 98759672 98760250 -128764328 + HSATII Satellite Satellite 1 587 -8 979 112 16 29 chr3 98760301 98761052 -128763526 + HSATII Satellite Satellite 1 741 0 1215 125 11 6 chr3 98761083 98762021 -128762557 + HSATII Satellite Satellite 1 942 -14 827 127 13 0 chr3 98762051 98762209 -128762369 + HSATII Satellite Satellite 1 160 -10 1109 122 8 4 chr3 98762245 98763070 -128761508 + HSATII Satellite Satellite 1 828 -7 573 177 0 0 chr3 98763099 98763246 -128761332 + HSATII Satellite Satellite 17 163 -7 231 103 0 0 chr3 98763371 98763410 -128761168 + HSATII Satellite Satellite 128 166 -4 968 119 3 19 chr3 98763473 98763795 -128760783 + HSATII Satellite Satellite 1 316 0 1143 124 11 12 chr3 98763822 98766956 -128757622 + HSATII Satellite Satellite 1 3129 0 1000 102 14 21 chr3 98766982 98767400 -128757178 + HSATII Satellite Satellite 1 415 0 1077 119 6 9 chr3 98767431 98768507 -128756071 + HSATII Satellite Satellite 1 1072 -14 716 121 36 18 chr3 98768537 98768703 -128755875 + HSATII Satellite Satellite 1 169 -1 1110 130 19 0 chr3 98768741 98769212 -128755366 + HSATII Satellite Satellite 1 480 -2 910 121 18 17 chr3 98769227 98770226 -128754352 + HSATII Satellite Satellite 1 999 -17 1152 122 8 8 chr3 98770238 98771003 -128753575 + HSATII Satellite Satellite 1 765 -50 1068 115 9 13 chr3 98771033 98771966 -128752612 + HSATII Satellite Satellite 1 929 -1 996 111 14 19 chr3 98771993 98772629 -128751949 + HSATII Satellite Satellite 1 633 -1 656 160 20 0 chr3 98772652 98772802 -128751776 + HSATII Satellite Satellite 17 169 -1 996 100 24 16 chr3 98772829 98773210 -128751368 + HSATII Satellite Satellite 1 384 -8 1001 123 6 14 chr3 98773245 98774490 -128750088 + HSATII Satellite Satellite 1 1236 0 929 128 15 0 chr3 98774516 98775097 -128749481 + HSATII Satellite Satellite 1 589 -18 1238 109 7 9 chr3 98775141 98776026 -128748552 + HSATII Satellite Satellite 1 883 -102 926 125 3 19 chr3 98776089 98776411 -128748167 + HSATII Satellite Satellite 1 316 0 1143 124 12 10 chr3 98776438 98779621 -128744957 + HSATII Satellite Satellite 1 3187 0 1000 100 14 21 chr3 98779647 98780065 -128744513 + HSATII Satellite Satellite 1 415 0 826 105 18 18 chr3 98780115 98780440 -128744138 + HSATII Satellite Satellite 1 325 -14 716 121 36 18 chr3 98780470 98780636 -128743942 + HSATII Satellite Satellite 1 169 -1 1089 132 19 0 chr3 98780674 98781145 -128743433 + HSATII Satellite Satellite 1 480 -2 910 105 24 18 chr3 98781160 98781791 -128742787 + HSATII Satellite Satellite 1 634 -50 603 143 12 36 chr3 98781925 98782093 -128742485 - HSATII Satellite Satellite -4 166 3 1131 109 10 5 chr3 98782107 98783235 -128741343 - HSATII Satellite Satellite 0 1133 1 910 119 16 20 chr3 98783274 98784140 -128740438 - HSATII Satellite Satellite -27 862 1 1110 130 19 0 chr3 98784155 98784626 -128739952 - HSATII Satellite Satellite -1 480 1 695 127 36 18 chr3 98784664 98784830 -128739748 - HSATII Satellite Satellite -1 169 1 1077 115 10 9 chr3 98784860 98785935 -128738643 - HSATII Satellite Satellite -98 1076 1 1143 124 9 10 chr3 98785966 98788886 -128735692 - HSATII Satellite Satellite 0 2917 1 948 114 0 0 chr3 98788915 98789073 -128735505 - HSATII Satellite Satellite -12 158 1 761 139 13 0 chr3 98789109 98789267 -128735311 - HSATII Satellite Satellite -10 160 1 756 143 0 0 chr3 98789297 98789437 -128735141 - HSATII Satellite Satellite -14 156 17 1248 113 13 9 chr3 98789452 98790258 -128734320 - HSATII Satellite Satellite -99 809 1 1101 127 13 16 chr3 98790289 98791920 -128732658 - HSATII Satellite Satellite 0 1627 1 896 118 5 15 chr3 98791946 98792565 -128732013 - HSATII Satellite Satellite 0 612 1 647 166 0 18 chr3 98792591 98792754 -128731824 - HSATII Satellite Satellite 0 170 11 1031 116 11 17 chr3 98792790 98793329 -128731249 - HSATII Satellite Satellite -27 536 1 1086 126 1 4 chr3 98793354 98794075 -128730503 - HSATII Satellite Satellite -31 719 1 1176 118 24 0 chr3 98794104 98794975 -128729603 - HSATII Satellite Satellite -12 891 1 794 133 13 0 chr3 98795011 98795169 -128729409 - HSATII Satellite Satellite -10 160 1 1248 120 11 10 chr3 98795199 98796160 -128728418 - HSATII Satellite Satellite -99 961 1 991 109 16 29 chr3 98796191 98796942 -128727636 - HSATII Satellite Satellite 0 741 1 925 124 17 2 chr3 98796993 98797414 -128727164 - HSATII Satellite Satellite 0 427 1 183 132 44 29 chr3 98797424 98797492 -128727086 + (GAATG)n Satellite Satellite 2 70 0 1101 138 0 0 chr3 98797515 98797832 -128726746 - HSATII Satellite Satellite 0 317 1 1119 121 5 6 chr3 98797858 98798962 -128725616 - HSATII Satellite Satellite -99 1103 1 1103 120 12 5 chr3 98798994 98799602 -128724976 - HSATII Satellite Satellite -23 612 1 1109 120 9 4 chr3 98799729 98800461 -128724117 - HSATII Satellite Satellite -12 735 1 794 133 13 0 chr3 98800497 98800655 -128723923 - HSATII Satellite Satellite -10 160 1 1248 122 10 7 chr3 98800685 98801695 -128722883 - HSATII Satellite Satellite -99 1013 1 1061 124 13 9 chr3 98801726 98803786 -128720792 - HSATII Satellite Satellite 0 2068 1 998 124 9 8 chr3 98803797 98804823 -128719755 - HSATII Satellite Satellite 0 1027 1 1110 117 15 6 chr3 98804849 98805331 -128719247 - HSATII Satellite Satellite 0 486 1 968 116 3 19 chr3 98805358 98805680 -128718898 - HSATII Satellite Satellite -17 316 1 1163 116 7 3 chr3 98805743 98806623 -128717955 - HSATII Satellite Satellite -12 883 1 827 127 13 0 chr3 98806659 98806817 -128717761 - HSATII Satellite Satellite -10 160 1 1248 120 11 10 chr3 98806847 98807808 -128716770 - HSATII Satellite Satellite -99 961 1 970 129 18 11 chr3 98807839 98809209 -128715369 - HSATII Satellite Satellite -5 1379 1 1098 128 3 5 chr3 98809220 98810355 -128714223 - HSATII Satellite Satellite 0 1132 1 1110 121 15 6 chr3 98810381 98810863 -128713715 - HSATII Satellite Satellite 0 486 1 1004 121 3 19 chr3 98810890 98811212 -128713366 - HSATII Satellite Satellite -23 317 1 1139 117 7 3 chr3 98811276 98812254 -128712324 - HSATII Satellite Satellite -12 981 1 761 139 13 0 chr3 98812290 98812448 -128712130 - HSATII Satellite Satellite -10 160 1 714 157 0 0 chr3 98812478 98812618 -128711960 - HSATII Satellite Satellite -14 156 17 1208 112 9 10 chr3 98812633 98813440 -128711138 - HSATII Satellite Satellite -1 806 1 1122 126 13 15 chr3 98813471 98815102 -128709476 - HSATII Satellite Satellite 0 1627 1 815 140 0 13 chr3 98815128 98815350 -128709228 - HSATII Satellite Satellite 0 219 1 1089 119 9 11 chr3 98815361 98816803 -128707775 - HSATII Satellite Satellite 0 1439 1 1214 117 11 10 chr3 98816830 98818095 -128706483 - HSATII Satellite Satellite -12 1266 1 837 147 14 0 chr3 98818123 98818567 -128706011 - HSATII Satellite Satellite -130 450 1 4792 144 46 16 chr3 98818682 98819615 -128704963 + L1M1 LINE L1 2614 3574 -3991 275 201 0 32 chr3 98819618 98819772 -128704806 + (TAA)n Simple_repeat Simple_repeat 1 149 0 399 231 0 0 chr3 98819780 98819940 -128704638 + (TTA)n Simple_repeat Simple_repeat 1 160 0 11548 215 24 7 chr3 98819941 98822661 -128701917 + L1M1 LINE L1 3536 6302 -1263 30 27 0 0 chr3 98823228 98823265 -128701313 + AT_rich Low_complexity Low_complexity 1 37 0 215 306 148 19 chr3 98823979 98824087 -128700491 + L2 LINE L2 3176 3297 -16 433 288 102 17 chr3 98824095 98824272 -128700306 - L2 LINE L2 0 3313 3122 552 227 22 61 chr3 98824385 98824629 -128699949 + MER41B LTR ERV1 55 427 -208 228 212 24 12 chr3 98825084 98825249 -128699329 + (TA)n Simple_repeat Simple_repeat 1 167 0 264 345 60 0 chr3 98826934 98827050 -128697528 - L2 LINE L2 0 3313 3191 183 80 0 0 chr3 98827151 98827176 -128697402 + (CA)n Simple_repeat Simple_repeat 2 26 0 227 282 24 24 chr3 98828997 98829082 -128695496 + LTR16C LTR ERVL 405 489 -2 315 85 0 0 chr3 98829148 98829195 -128695383 + (GA)n Simple_repeat Simple_repeat 2 48 0 948 222 73 17 chr3 98829547 98829849 -128694729 + MER33 DNA MER1_type 1 319 -5 242 325 13 0 chr3 98831247 98831324 -128693254 - MER69 DNA AcHobo -1140 86 9 793 174 23 6 chr3 98831329 98831501 -128693077 + MER53 DNA DNA 2 176 -13 425 289 119 54 chr3 98831639 98831916 -128692662 + LTR40a LTR ERVL 14 308 -211 210 150 0 0 chr3 98832036 98832076 -128692502 + (CA)n Simple_repeat Simple_repeat 2 41 0 26 0 0 0 chr3 98834088 98834114 -128690464 + AT_rich Low_complexity Low_complexity 1 26 0 266 213 0 0 chr3 98835374 98835435 -128689143 - LTR66 LTR ERVL -156 454 394 242 313 76 7 chr3 98835956 98836100 -128688478 + L1MC/D LINE L1 3758 3911 -2235 496 314 74 94 chr3 98836940 98837055 -128687523 + L1MC/D LINE L1 4388 4504 -1642 189 0 0 0 chr3 98837055 98837076 -128687502 + (CA)n Simple_repeat Simple_repeat 2 22 0 496 314 74 94 chr3 98837076 98837691 -128686887 + L1MC/D LINE L1 4504 5103 -1043 670 304 38 30 chr3 98837829 98838198 -128686380 + L1MC/D LINE L1 5317 5688 -2120 23 0 0 0 chr3 98839303 98839326 -128685252 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr3 98839590 98839617 -128684961 + AT_rich Low_complexity Low_complexity 1 27 0 346 274 24 57 chr3 98840163 98840287 -128684291 - MER94 DNA DNA -5 129 10 427 217 0 0 chr3 98840891 98840997 -128683581 + MER53 DNA DNA 72 177 -12 196 374 61 0 chr3 98841499 98841598 -128682980 - L2 LINE L2 -827 2487 2383 347 306 41 48 chr3 98841901 98842048 -128682530 - MIR SINE MIR -86 176 31 40 83 0 0 chr3 98842062 98842158 -128682420 + AT_rich Low_complexity Low_complexity 1 96 0 230 197 26 26 chr3 98842323 98842399 -128682179 + A-rich Low_complexity Low_complexity 4 79 0 241 274 0 14 chr3 98842508 98842581 -128681997 - MER94 DNA DNA -3 131 60 242 311 66 71 chr3 98842906 98843102 -128681476 - MIR SINE MIR -28 234 40 1674 257 105 16 chr3 98843369 98844055 -128680523 + MER20B DNA MER1_type 18 764 -19 533 342 115 12 chr3 98844401 98844731 -128679847 + LTR16A LTR ERVL 87 450 0 234 128 0 0 chr3 98844782 98844821 -128679757 + (TAGA)n Simple_repeat Simple_repeat 1 39 0 212 372 54 7 chr3 98844838 98844986 -128679592 - MIR3 SINE MIR -35 173 19 23 54 0 0 chr3 98845322 98845359 -128679219 + AT_rich Low_complexity Low_complexity 1 37 0 22 80 0 0 chr3 98846084 98846134 -128678444 + AT_rich Low_complexity Low_complexity 1 50 0 308 336 13 27 chr3 98846464 98846613 -128677965 - MLT1K LTR MaLR -30 558 412 4709 182 22 23 chr3 98847099 98848017 -128676561 - L1PA14 LINE L1 -13 6148 5231 1733 157 157 16 chr3 98848017 98848392 -128676186 + MSTA LTR MaLR 1 428 0 7466 186 35 37 chr3 98848394 98849975 -128674603 + MSTA-int LTR MaLR 3 1580 0 1661 174 135 29 chr3 98849976 98850362 -128674216 + MSTA LTR MaLR 2 428 0 4709 182 22 23 chr3 98850362 98851190 -128673388 - L1PA14 LINE L1 -930 5231 4432 1875 197 0 3 chr3 98851200 98851580 -128672998 + L1P LINE L1 2200 2578 -3568 3630 161 22 6 chr3 98851581 98852266 -128672312 + L1P LINE L1 3703 4398 -1748 25 65 0 0 chr3 98853185 98853231 -128671347 + AT_rich Low_complexity Low_complexity 1 46 0 1307 224 27 3 chr3 98854202 98854496 -128670082 - AluJb SINE Alu -11 301 1 193 347 0 27 chr3 98855695 98855770 -128668808 + MIR SINE MIR 82 154 -108 816 193 15 86 chr3 98856103 98856300 -128668278 + LOR1-int LTR ERV1 46 228 -7892 672 130 53 15 chr3 98856313 98856444 -128668134 + L1M1 LINE L1 13 148 -7417 * 6045 223 17 37 chr3 98856427 98857736 -128666842 + L1M1 LINE L1 1109 2390 -5175 2170 131 0 3 chr3 98857736 98858049 -128666529 + AluSx SINE Alu 1 312 0 6045 223 17 37 chr3 98858049 98858142 -128666436 + L1M1 LINE L1 2390 2483 -5082 1797 209 41 5 chr3 98858243 98858654 -128665924 - L1 LINE L1 -2186 3960 3535 496 158 11 21 chr3 98858658 98858753 -128665825 + L1PB4 LINE L1 6056 6149 -7 635 165 8 0 chr3 98859337 98859458 -128665120 - AluSg/x SINE Alu -8 304 183 30266 118 11 65 chr3 98859781 98862487 -128662091 - L1PA7 LINE L1 -13 6141 3291 2471 52 7 3 chr3 98862487 98862795 -128661783 - AluY SINE Alu -2 309 1 30266 118 11 65 chr3 98862795 98866586 -128657992 - L1PA7 LINE L1 -2863 3291 9 22 56 0 0 chr3 98866589 98866625 -128657953 + AT_rich Low_complexity Low_complexity 1 36 0 33 25 0 0 chr3 98866895 98866935 -128657643 + AT_rich Low_complexity Low_complexity 1 40 0 654 323 108 11 chr3 98867052 98867405 -128657173 + LTR16C LTR ERVL 80 466 -25 2049 196 62 2 chr3 98867715 98868119 -128656459 - MSTA LTR MaLR 0 428 1 695 258 19 43 chr3 98868236 98868492 -128656086 + L1M4 LINE L1 11 260 -6282 1043 268 77 20 chr3 98868683 98868782 -128655796 + L1M4 LINE L1 679 771 -5771 324 0 0 0 chr3 98868782 98868818 -128655760 + (CA)n Simple_repeat Simple_repeat 2 37 0 1043 268 77 20 chr3 98868818 98869121 -128655457 + L1M4 LINE L1 771 1104 -5438 5599 261 50 43 chr3 98869157 98871331 -128653247 + L1M4 LINE L1 2424 4583 -2061 5645 118 16 15 chr3 98871331 98872558 -128652020 + L1PA11 LINE L1 4942 6168 -6 5599 261 50 43 chr3 98872558 98872917 -128651661 + L1M4 LINE L1 4583 4970 -1674 2074 76 8 4 chr3 98872917 98873181 -128651397 - AluY SINE Alu -14 297 33 5599 261 50 43 chr3 98873181 98873484 -128651094 + L1M4 LINE L1 4970 5270 -1374 1332 213 30 12 chr3 98873616 98873949 -128650629 + L1MA3 LINE L1 5967 6305 0 332 284 30 0 chr3 98875354 98875488 -128649090 + (TA)n Simple_repeat Simple_repeat 2 139 0 807 79 95 32 chr3 98875864 98875990 -128648588 + MLT2A2 LTR ERVL 1 134 -319 32 0 0 0 chr3 98876005 98876037 -128648541 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr3 98876353 98876382 -128648196 + AT_rich Low_complexity Low_complexity 1 29 0 25 65 0 0 chr3 98879088 98879134 -128645444 + AT_rich Low_complexity Low_complexity 1 46 0 300 27 0 0 chr3 98880940 98880977 -128643601 + (TG)n Simple_repeat Simple_repeat 2 38 0 1940 119 7 10 chr3 98881084 98881387 -128643191 - AluSq SINE Alu -11 302 1 21 0 0 0 chr3 98881758 98881779 -128642799 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 98882793 98882821 -128641757 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr3 98883379 98883411 -128641167 + AT_rich Low_complexity Low_complexity 1 32 0 374 290 36 22 chr3 98883443 98883581 -128640997 + L2 LINE L2 3171 3310 -3 248 330 0 33 chr3 98883836 98884011 -128640567 + A-rich Low_complexity Low_complexity 5 290 0 252 316 108 43 chr3 98885088 98885319 -128639259 + LTR33 LTR ERVL 205 450 -71 249 319 34 44 chr3 98886025 98886155 -128638423 + MIR SINE MIR 31 158 -60 35 54 0 0 chr3 98886409 98886465 -128638113 + AT_rich Low_complexity Low_complexity 1 56 0 232 246 70 63 chr3 98887285 98887427 -128637151 - L1ME1 LINE L1 -166 6000 5907 7077 216 24 4 chr3 98887450 98889176 -128635402 + ERVL-B1 LTR ERVL 3161 4993 -534 2264 171 32 70 chr3 98889173 98889729 -128634849 + ERVL-B1 LTR ERVL 5223 5757 -7 * 1477 215 96 78 chr3 98889729 98890157 -128634421 + MLT2B1 LTR ERVL 1 420 -100 2337 45 0 0 chr3 98890157 98890449 -128634129 - L1PA4 LINE L1 -2 6153 5862 1477 215 96 78 chr3 98890449 98890487 -128634091 + MLT2B1 LTR ERVL 420 456 -64 557 38 57 9 chr3 98890487 98890593 -128633985 + (CA)n Simple_repeat Simple_repeat 2 112 0 1477 215 96 78 chr3 98890593 98890636 -128633942 + MLT2B1 LTR ERVL 456 520 0 929 267 84 6 chr3 98890638 98890982 -128633596 - L1ME1 LINE L1 -263 5903 5533 679 282 58 88 chr3 98890999 98891467 -128633111 - L1MEc LINE L1 -5715 681 228 480 300 62 31 chr3 98891869 98892029 -128632549 + MER5B DNA MER1_type 14 178 0 180 0 0 0 chr3 98892451 98892471 -128632107 + (T)n Simple_repeat Simple_repeat 1 20 0 24 32 0 0 chr3 98893758 98893789 -128630789 + AT_rich Low_complexity Low_complexity 1 31 0 330 26 0 0 chr3 98894550 98894589 -128629989 + (CA)n Simple_repeat Simple_repeat 1 39 0 231 331 16 25 chr3 98895278 98895399 -128629179 + L1 LINE L1 4072 4191 -1955 238 209 154 11 chr3 98895769 98895860 -128628718 - Charlie4 DNA MER1_type -39 1922 1819 198 0 0 0 chr3 98896014 98896036 -128628542 + (CAAAA)n Simple_repeat Simple_repeat 2 23 0 565 310 30 10 chr3 98896055 98896352 -128628226 + L1ME2 LINE L1 2273 2575 -3571 860 287 117 31 chr3 98896364 98897008 -128627570 + L1ME2 LINE L1 5297 5995 -169 2121 111 0 3 chr3 98899631 98899929 -128624649 - AluSx SINE Alu -15 297 1 22 35 0 0 chr3 98900050 98900079 -128624499 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr3 98900226 98900251 -128624327 + AT_rich Low_complexity Low_complexity 1 25 0 2160 112 0 10 chr3 98900536 98900850 -128623728 + AluSq SINE Alu 1 311 -2 1765 117 35 0 chr3 98900853 98900979 -128623599 + AluSx SINE Alu 1 121 -191 315 0 0 0 chr3 98900979 98901014 -128623564 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 1765 117 35 0 chr3 98901014 98901170 -128623408 + AluSx SINE Alu 121 293 -19 614 0 0 0 chr3 98901172 98901245 -128623333 + L1PA2 LINE L1 6078 6150 -5 265 89 0 36 chr3 98901317 98901373 -128623205 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 1315 241 79 89 chr3 98901403 98901963 -128622615 - MLT2B3 LTR ERVL 0 554 1 1281 237 47 55 chr3 98902648 98903027 -128621551 + L1M1 LINE L1 4943 5330 -937 1576 186 7 24 chr3 98903027 98903317 -128621261 + AluJo SINE Alu 1 285 -27 1281 237 47 55 chr3 98903317 98903511 -128621067 + L1M1 LINE L1 5330 5524 -743 214 196 18 36 chr3 98903511 98903567 -128621011 + GA-rich Low_complexity Low_complexity 2 56 0 2789 224 28 9 chr3 98903567 98904237 -128620341 + L1MB5 LINE L1 5479 6161 -13 24 53 0 0 chr3 98904241 98904279 -128620299 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr3 98904536 98904571 -128620007 + AT_rich Low_complexity Low_complexity 1 35 0 814 201 27 0 chr3 98904647 98904796 -128619782 - AluJb SINE Alu -19 293 141 707 358 100 14 chr3 98904799 98905389 -128619189 + MERVL LTR ERVL 2536 3176 -2309 387 256 18 4 chr3 98906263 98906383 -128618195 + MLT1H LTR MaLR 416 549 0 446 286 77 75 chr3 98907584 98907933 -128616645 + LTR16A1 LTR ERVL 3 352 -105 * 709 256 12 0 chr3 98907931 98908095 -128616483 - MER58A DNA MER1_type -20 204 39 23 54 0 0 chr3 98908338 98908375 -128616203 + AT_rich Low_complexity Low_complexity 1 37 0 198 208 0 0 chr3 98909086 98909139 -128615439 + (TA)n Simple_repeat Simple_repeat 2 54 0 324 353 27 13 chr3 98909198 98909348 -128615230 + MIR SINE MIR 11 162 -100 24 32 0 0 chr3 98909388 98909419 -128615159 + AT_rich Low_complexity Low_complexity 1 31 0 217 279 0 0 chr3 98909866 98909927 -128614651 + GA-rich Low_complexity Low_complexity 2 62 0 267 284 107 22 chr3 98910142 98910367 -128614211 + L1ME LINE L1 5538 5781 -340 22 56 0 0 chr3 98911330 98911366 -128613212 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr3 98913187 98913222 -128611356 + AT_rich Low_complexity Low_complexity 1 35 0 431 344 42 16 chr3 98913589 98913781 -128610797 - MIR SINE MIR -55 207 11 279 0 0 0 chr3 98916752 98916783 -128607795 + (TC)n Simple_repeat Simple_repeat 2 32 0 * 396 40 0 0 chr3 98916782 98916832 -128607746 + (TG)n Simple_repeat Simple_repeat 1 50 0 1887 134 0 0 chr3 98917233 98917501 -128607077 - AluSg SINE Alu -30 280 13 519 17 0 0 chr3 98917605 98917665 -128606913 + (CA)n Simple_repeat Simple_repeat 1 60 0 23 54 0 0 chr3 98918003 98918040 -128606538 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr3 98918302 98918323 -128606255 + AT_rich Low_complexity Low_complexity 1 21 0 1291 221 43 3 chr3 98918363 98918679 -128605899 - L1PB4 LINE L1 -3 6153 5823 2680 190 46 18 chr3 98918833 98919704 -128604874 - L1PB4 LINE L1 -319 5837 4944 6791 61 18 0 chr3 98919762 98920087 -128604491 - L1PA7 LINE L1 -3 6151 5833 405 0 0 0 chr3 98920087 98920132 -128604446 + (TTTC)n Simple_repeat Simple_repeat 2 46 0 1844 105 4 8 chr3 98920132 98920389 -128604189 - AluSc SINE Alu -30 279 24 6791 61 18 0 chr3 98920389 98921037 -128603541 - L1PA7 LINE L1 -320 5834 5178 21 0 0 0 chr3 98921199 98921220 -128603358 + AT_rich Low_complexity Low_complexity 1 21 0 33 0 0 0 chr3 98921865 98921898 -128602680 + AT_rich Low_complexity Low_complexity 1 33 0 366 253 36 24 chr3 98923407 98923574 -128601004 - MLT1I LTR MaLR -10 418 266 196 269 90 30 chr3 98923804 98923871 -128600707 + MIR3 SINE MIR 138 208 0 489 305 69 23 chr3 98924031 98924205 -128600373 - MLT1I LTR MaLR -194 215 34 1402 118 5 0 chr3 98924255 98924459 -128600119 + AluSx SINE Alu 1 205 -107 26 64 0 0 chr3 98925487 98925534 -128599044 + AT_rich Low_complexity Low_complexity 1 47 0 23 54 0 0 chr3 98925775 98925812 -128598766 + AT_rich Low_complexity Low_complexity 1 37 0 547 269 15 8 chr3 98927791 98927925 -128596653 + Cheshire DNA MER1_type 268 402 -2018 628 177 6 104 chr3 98927927 98928091 -128596487 + MSTB LTR MaLR 3 150 -276 342 264 37 18 chr3 98928160 98928323 -128596255 + L1MCc LINE L1 1371 1536 -4887 * 662 282 42 72 chr3 98928320 98929005 -128595573 + L1MCc LINE L1 2426 3090 -4032 1191 286 33 10 chr3 98929007 98929399 -128595179 + Cheshire DNA MER1_type 2 402 -2018 1519 197 84 55 chr3 98929399 98929815 -128594763 + MSTB1 LTR MaLR 1 428 -4 3469 241 92 22 chr3 98929825 98930110 -128594468 + Cheshire DNA MER1_type 396 660 -1760 5358 39 2 0 chr3 98930110 98930785 -128593793 + L1PA5 LINE L1 5493 6168 0 3469 241 92 22 chr3 98930785 98931678 -128592900 + Cheshire DNA MER1_type 660 1658 -762 24 85 0 0 chr3 98931678 98931737 -128592841 + AT_rich Low_complexity Low_complexity 1 59 0 16384 47 2 1 chr3 98931908 98934735 -128589843 - L1PA5 LINE L1 -9 6145 3316 242 273 57 0 chr3 98934736 98934824 -128589754 + Cheshire DNA MER1_type 1651 1743 -677 411 276 128 17 chr3 98934828 98935180 -128589398 + L1MCc LINE L1 2773 3163 -3959 2021 238 48 22 chr3 98935181 98936167 -128588411 + L1MA9 LINE L1 4800 5793 -519 23 33 0 0 chr3 98936407 98936437 -128588141 + AT_rich Low_complexity Low_complexity 1 30 0 1982 173 36 118 chr3 98936476 98937035 -128587543 - MLT2B3 LTR ERVL 0 554 46 4294 72 48 3 chr3 98937035 98937617 -128586961 + LTR14B LTR ERVK 1 608 0 1982 173 36 118 chr3 98937617 98937660 -128586918 - MLT2B3 LTR ERVL -508 46 1 1168 245 75 40 chr3 98937665 98938146 -128586432 + L1MA9 LINE L1 5811 6308 -4 321 303 32 22 chr3 98938133 98938318 -128586260 + L1MCc LINE L1 3111 3297 -3644 * 1061 182 77 0 chr3 98938319 98938528 -128586050 + L1PB4 LINE L1 5932 6156 0 714 289 76 15 chr3 98938525 98938933 -128585645 + L1MCc LINE L1 3380 3812 -3129 * 328 192 14 0 chr3 98938941 98939014 -128585564 + L1MA7 LINE L1 6193 6266 -25 3746 231 15 14 chr3 98939062 98939842 -128584736 + L1MA4 LINE L1 3 783 -4545 1636 172 206 0 chr3 98939843 98940203 -128584375 + MER57B LTR ERV1 1 434 0 15304 168 37 11 chr3 98940221 98943040 -128581538 + MER57-int LTR ERV1 1883 7146 -391 610 141 31 31 chr3 98943041 98943169 -128581409 + LTR54B LTR ERV1 4 131 -367 1308 109 127 27 chr3 98943169 98943390 -128581188 + MER57-int LTR ERV1 7279 7521 -16 771 250 29 5 chr3 98943390 98943406 -128581172 + L1MA4 LINE L1 769 783 -4545 2878 127 5 0 chr3 98943406 98943838 -128580740 + MER57B LTR ERV1 1 434 0 771 250 29 5 chr3 98943838 98944025 -128580553 + L1MA4 LINE L1 783 977 -4351 392 241 0 0 chr3 98944067 98944150 -128580428 + L1MCc LINE L1 4875 4957 -1984 * 1428 170 9 8 chr3 98944143 98944517 -128580061 + L1MA4 LINE L1 967 1343 -4065 * 4827 199 41 24 chr3 98944506 98946628 -128577950 + L1MA4 LINE L1 4332 6481 -1 444 298 38 15 chr3 98946633 98946836 -128577742 + L1M3 LINE L1 3081 3289 -2857 1531 153 66 22 chr3 98946837 98947163 -128577415 + THE1C LTR MaLR 1 368 -7 774 317 10 13 chr3 98947265 98947656 -128576922 + L1M3 LINE L1 3388 3777 -2369 742 251 73 4 chr3 98947652 98947899 -128576679 + L1ME2 LINE L1 5726 5989 -175 * 35 24 0 0 chr3 98948042 98948084 -128576494 + AT_rich Low_complexity Low_complexity 1 42 0 285 29 0 0 chr3 98948465 98948499 -128576079 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 203 316 29 43 chr3 98949225 98949364 -128575214 - MIR SINE MIR -46 216 80 2899 20 0 0 chr3 98949666 98950010 -128574568 - L1PA3 LINE L1 -930 5216 4873 7506 29 5 0 chr3 98950010 98950955 -128573623 + L1PA3 LINE L1 5207 6155 0 22 0 0 0 chr3 98950980 98951002 -128573576 + AT_rich Low_complexity Low_complexity 1 22 0 379 351 41 0 chr3 98951693 98951864 -128572714 - L2 LINE L2 -905 2409 2232 21 36 0 0 chr3 98952514 98952542 -128572036 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 98952786 98952809 -128571769 + AT_rich Low_complexity Low_complexity 1 23 0 56 83 0 0 chr3 98952963 98953096 -128571482 + AT_rich Low_complexity Low_complexity 1 133 0 200 184 20 0 chr3 98953800 98953849 -128570729 + (CA)n Simple_repeat Simple_repeat 1 50 0 249 188 21 0 chr3 98954789 98954837 -128569741 + (CA)n Simple_repeat Simple_repeat 1 49 0 1186 251 71 27 chr3 98955329 98955403 -128569175 + L1MCc LINE L1 1035 1104 -5619 1966 162 0 0 chr3 98955403 98955711 -128568867 + AluSq SINE Alu 1 308 -5 1186 251 71 27 chr3 98955711 98956392 -128568186 + L1MCc LINE L1 1104 1823 -4900 * 6440 201 24 19 chr3 98956390 98958099 -128566479 + L1M3 LINE L1 3850 5568 -745 42 20 0 0 chr3 98958884 98958933 -128565645 + AT_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr3 98962305 98962337 -128562241 + AT_rich Low_complexity Low_complexity 1 32 0 5115 80 6 1 chr3 98962953 98963644 -128560934 - L1PA7 LINE L1 -2 6152 5459 219 243 14 86 chr3 98963672 98963742 -128560836 - MIR SINE MIR -80 182 118 534 196 126 14 chr3 98965597 98965740 -128558838 - MLT1C LTR MaLR -303 164 6 23 33 0 0 chr3 98966278 98966308 -128558270 + AT_rich Low_complexity Low_complexity 1 30 0 421 200 169 6 chr3 98966308 98966468 -128558110 - L1MA8 LINE L1 -2 6289 6104 312 356 107 0 chr3 98966606 98966783 -128557795 + MIR SINE MIR 65 260 -2 4092 30 0 2 chr3 98967566 98968057 -128556521 + L1PA4 LINE L1 5663 6152 -3 305 316 71 26 chr3 98968507 98968662 -128555916 + MIR SINE MIR 45 206 -56 24 0 0 0 chr3 98968794 98968818 -128555760 + AT_rich Low_complexity Low_complexity 1 24 0 477 113 62 0 chr3 98969105 98969185 -128555393 - MER1B DNA MER1_type 0 329 245 1281 157 19 0 chr3 98969187 98969397 -128555181 - MER1B DNA MER1_type -77 220 7 194 0 39 0 chr3 98970389 98970415 -128554163 + (TTA)n Simple_repeat Simple_repeat 2 28 0 1439 188 22 7 chr3 98970418 98970690 -128553888 - AluJb SINE Alu -36 276 1 325 309 110 49 chr3 98971945 98972191 -128552387 - MIR SINE MIR 0 262 2 379 244 205 34 chr3 98972635 98972869 -128551709 + MLT1F LTR MaLR 269 542 0 649 313 71 16 chr3 98973025 98973440 -128551138 + MLT1J2 LTR MaLR 4 396 -13 360 321 50 61 chr3 98973465 98973727 -128550851 + MLT1K LTR MaLR 96 354 -234 2446 181 96 16 chr3 99023747 99024309 -128500269 + MER11A LTR ERVK 660 1266 0 928 301 56 14 chr3 99024309 99024881 -128499697 + L1ME1 LINE L1 2887 3482 -2664 6897 62 9 0 chr3 99024887 99026103 -128498475 + L1PA7 LINE L1 4935 6153 -1 1689 271 44 54 chr3 99026104 99026335 -128498243 + L1ME1 LINE L1 5420 5652 -514 1956 196 39 7 chr3 99026335 99026748 -128497830 + MSTB LTR MaLR 1 426 0 1689 271 44 54 chr3 99026748 99027271 -128497307 + L1ME1 LINE L1 5652 6166 0 2188 185 28 0 chr3 99027565 99027998 -128496580 + L1MC2 LINE L1 5319 5763 -581 251 266 96 0 chr3 99028115 99028209 -128496369 - L1M4 LINE L1 -1587 4559 4457 206 280 109 83 chr3 99028300 99028493 -128496085 + L2 LINE L2 3114 3311 -2 2166 92 23 0 chr3 99028913 99029216 -128495362 + AluY SINE Alu 2 311 0 2164 177 43 15 chr3 99029935 99030208 -128494370 + L1MC2 LINE L1 5832 6125 -219 588 88 0 0 chr3 99030208 99030288 -128494290 + MADE1 DNA Mariner 1 80 0 2164 177 43 15 chr3 99030288 99030477 -128494101 + L1MC2 LINE L1 6125 6307 -37 201 158 0 0 chr3 99030909 99030947 -128493631 + A-rich Low_complexity Low_complexity 3 40 0 829 107 25 0 chr3 99032061 99032182 -128492396 - AluSp/q SINE Alu -17 296 173 728 91 9 0 chr3 99032202 99032312 -128492266 + (GA)n Simple_repeat Simple_repeat 2 112 0 14237 35 0 3 chr3 99032605 99034339 -128490239 - L1P LINE L1 -1057 5089 3361 225 159 0 0 chr3 99034541 99034585 -128489993 + CT-rich Low_complexity Low_complexity 1 44 0 485 327 28 47 chr3 99034592 99034622 -128489956 + L1MC5 LINE L1 6620 6649 -1180 1751 130 0 19 chr3 99034622 99034883 -128489695 + AluSg SINE Alu 36 291 -19 485 327 28 47 chr3 99034883 99035085 -128489493 + L1MC5 LINE L1 6649 6853 -976 24 91 0 0 chr3 99035469 99035535 -128489043 + AT_rich Low_complexity Low_complexity 1 66 0 1114 190 5 0 chr3 99036073 99036289 -128488289 - L1PB1 LINE L1 -5 6146 5930 3049 169 11 40 chr3 99036290 99036653 -128487925 + L1PB1 LINE L1 4932 5304 -847 222 37 0 0 chr3 99036653 99036680 -128487898 + (TAA)n Simple_repeat Simple_repeat 2 28 0 3049 169 11 40 chr3 99036680 99037202 -128487376 + L1PB1 LINE L1 5304 5788 -363 224 137 77 8 chr3 99037215 99037332 -128487246 + (TA)n Simple_repeat Simple_repeat 1 125 0 803 175 9 2 chr3 99037339 99037497 -128487081 + L1PB1 LINE L1 5782 5940 -240 2309 181 27 0 chr3 99038018 99038432 -128486146 + MSTB1 LTR MaLR 1 425 -7 34 65 0 0 chr3 99038830 99038892 -128485686 + AT_rich Low_complexity Low_complexity 1 62 0 37 76 0 0 chr3 99039149 99039228 -128485350 + AT_rich Low_complexity Low_complexity 1 79 0 208 346 51 0 chr3 99039887 99039965 -128484613 + MIR3 SINE MIR 110 191 -17 336 48 0 0 chr3 99041007 99041049 -128483529 + (TG)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chr3 99043056 99043081 -128481497 + AT_rich Low_complexity Low_complexity 1 25 0 261 226 12 12 chr3 99044415 99044499 -128480079 - L1MA6 LINE L1 -7 6293 6210 260 228 104 63 chr3 99044614 99044725 -128479853 + MLT1H LTR MaLR 12 172 -377 * 662 367 47 3 chr3 99044719 99045057 -128479521 + LTR16A LTR ERVL 14 366 -84 657 285 73 16 chr3 99045111 99045476 -128479102 + MLT1H LTR MaLR 140 548 -1 369 0 0 0 chr3 99045566 99045607 -128478971 + (TG)n Simple_repeat Simple_repeat 2 42 0 198 171 0 0 chr3 99046127 99046168 -128478410 + (TG)n Simple_repeat Simple_repeat 2 42 0 442 217 59 0 chr3 99047802 99047912 -128476666 - MLT1C LTR MaLR -359 108 3 640 223 0 98 chr3 99048129 99048322 -128476256 + FAM SINE Alu 1 174 -1 26 0 0 0 chr3 99049121 99049147 -128475431 + AT_rich Low_complexity Low_complexity 1 26 0 1857 141 20 0 chr3 99050406 99050710 -128473868 + AluY SINE Alu 2 311 0 21 0 0 0 chr3 99053593 99053614 -128470964 + AT_rich Low_complexity Low_complexity 1 21 0 1191 169 60 80 chr3 99053662 99053964 -128470614 + AluJb SINE Alu 1 296 -6 186 103 0 0 chr3 99053969 99053998 -128470580 + (GA)n Simple_repeat Simple_repeat 2 30 0 21 57 0 0 chr3 99055320 99055355 -128469223 + AT_rich Low_complexity Low_complexity 1 35 0 351 0 0 0 chr3 99056617 99056656 -128467922 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr3 99056790 99056812 -128467766 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 99057182 99057204 -128467374 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr3 99057936 99057958 -128466620 + (CAG)n Simple_repeat Simple_repeat 2 23 0 2315 137 5 16 chr3 99057993 99058341 -128466237 + THE1C LTR MaLR 1 346 -29 4487 34 0 2 chr3 99058341 99058879 -128465699 - L1PA3 LINE L1 0 6155 5619 2315 137 5 16 chr3 99058879 99058909 -128465669 + THE1C LTR MaLR 346 375 0 8815 141 31 42 chr3 99058909 99060507 -128464071 + THE1C-int LTR MaLR 1 1580 0 2222 131 19 16 chr3 99060507 99060881 -128463697 + THE1C LTR MaLR 1 375 0 207 0 0 0 chr3 99060947 99060970 -128463608 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 52 58 0 0 chr3 99061136 99061223 -128463355 + AT_rich Low_complexity Low_complexity 1 87 0 9644 260 32 13 chr3 99062206 99065915 -128458663 - L1PA12 LINE L1 -1331 5517 1734 629 116 49 27 chr3 99065950 99066281 -128458297 + (TA)n Simple_repeat Simple_repeat 1 338 0 574 147 59 8 chr3 99066306 99066823 -128457755 + (TA)n Simple_repeat Simple_repeat 1 543 0 2219 87 0 3 chr3 99066823 99067112 -128457466 - AluY SINE Alu -23 288 1 297 0 0 0 chr3 99067118 99067151 -128457427 + (TA)n Simple_repeat Simple_repeat 2 34 0 265 214 14 0 chr3 99067180 99067250 -128457328 + (TA)n Simple_repeat Simple_repeat 2 72 0 285 333 17 23 chr3 99067281 99067550 -128457028 - L1PA12 LINE L1 -5140 1705 1422 349 304 46 15 chr3 99067593 99067780 -128456798 - L1M2 LINE L1 -6586 252 43 489 366 38 24 chr3 99068651 99068943 -128455635 - L3 LINE CR1 -34 1543 1248 29 0 0 0 chr3 99070194 99070223 -128454355 + AT_rich Low_complexity Low_complexity 1 29 0 714 281 63 22 chr3 99070400 99070766 -128453812 - MER114 LTR ERV -3 645 265 242 253 20 20 chr3 99071028 99071127 -128453451 - L1M4 LINE L1 -2364 3782 3684 919 343 41 9 chr3 99071377 99071715 -128452863 + LTR16A LTR ERVL 96 444 -6 337 278 41 0 chr3 99071718 99071815 -128452763 + MIR SINE MIR 146 246 -16 281 252 41 3 chr3 99072141 99072225 -128452353 - MLT1G LTR MaLR -58 532 413 3675 171 32 32 chr3 99072226 99073011 -128451567 + LTR1 LTR ERV1 1 785 0 288 346 33 11 chr3 99073812 99073994 -128450584 - MLT1-int LTR MaLR -827 544 359 403 35 4 0 chr3 99074056 99074113 -128450465 - L1PA3 LINE L1 -712 5443 5394 6112 24 0 0 chr3 99074113 99074816 -128449762 + L1PA3 LINE L1 5438 6144 -11 286 295 49 8 chr3 99074986 99075108 -128449470 - MLT1F1 LTR MaLR -2 553 427 323 323 77 22 chr3 99075247 99075494 -128449084 - MLT1F1 LTR MaLR -276 319 32 211 114 29 0 chr3 99076604 99076639 -128447939 + CT-rich Low_complexity Low_complexity 2 37 0 21 100 0 0 chr3 99078262 99078332 -128446246 + AT_rich Low_complexity Low_complexity 1 70 0 25 65 0 0 chr3 99078456 99078502 -128446076 + AT_rich Low_complexity Low_complexity 1 46 0 232 254 0 0 chr3 99078516 99078583 -128445995 + (TA)n Simple_repeat Simple_repeat 2 68 0 28 48 0 0 chr3 99079292 99079334 -128445244 + AT_rich Low_complexity Low_complexity 1 42 0 222 205 0 0 chr3 99079634 99079673 -128444905 + (CA)n Simple_repeat Simple_repeat 2 40 0 677 102 20 0 chr3 99079792 99079920 -128444658 + AluSg/x SINE Alu 188 317 0 21 0 0 0 chr3 99080579 99080600 -128443978 + AT_rich Low_complexity Low_complexity 1 21 0 363 164 16 107 chr3 99080667 99080789 -128443789 + MER61E LTR ERV1 1 111 -458 245 254 134 0 chr3 99080954 99081021 -128443557 + MER51A LTR ERV1 208 283 -351 454 247 38 25 chr3 99081087 99081330 -128443248 + MER61D LTR ERV1 335 1232 -39 1143 218 14 102 chr3 99081369 99081740 -128442838 - MLT1A2 LTR MaLR -36 338 1 2243 128 19 25 chr3 99081857 99082223 -128442355 + THE1B LTR MaLR 1 364 0 10057 125 24 0 chr3 99082223 99083715 -128440863 + THE1B-int LTR MaLR 1 1527 -53 1534 214 3 13 chr3 99083713 99084100 -128440478 + L1 LINE L1 4284 4666 -1480 * 312 343 44 25 chr3 99084647 99084851 -128439727 + L1 LINE L1 4112 4319 -1827 782 301 204 20 chr3 99084855 99085400 -128439178 + L2 LINE L2 1644 2288 -1026 484 249 55 77 chr3 99086946 99087219 -128437359 - LTR7 LTR ERV1 0 450 184 1657 179 137 11 chr3 99087815 99088194 -128436384 + MSTA LTR MaLR 1 427 -1 5068 160 8 52 chr3 99088197 99089148 -128435430 + MSTA-int LTR MaLR 3 912 -668 1162 135 14 3 chr3 99089148 99089334 -128435244 + MLT2A2 LTR ERVL 293 453 0 1326 164 17 4 chr3 99089334 99089565 -128435013 + MSTA-int LTR MaLR 1347 1580 0 1746 165 129 23 chr3 99089565 99089952 -128434626 + MSTA LTR MaLR 1 428 0 1917 124 33 17 chr3 99090032 99090331 -128434247 + AluSg SINE Alu 1 304 -6 30 59 0 0 chr3 99091498 99091549 -128433029 + AT_rich Low_complexity Low_complexity 1 51 0 450 294 8 0 chr3 99091763 99091889 -128432689 - L1MC4 LINE L1 -495 7547 7421 9755 226 25 63 chr3 99092125 99097576 -128427002 - L1PA16 LINE L1 -17 7587 2182 259 343 0 0 chr3 99097793 99097892 -128426686 - L1PA16 LINE L1 -5400 2181 2083 885 339 49 33 chr3 99098004 99098579 -128425999 - L1PA16 LINE L1 -6203 1371 788 624 239 51 51 chr3 99098592 99098826 -128425752 - L1MC4 LINE L1 -648 7394 7161 27 92 0 0 chr3 99099023 99099099 -128425479 + AT_rich Low_complexity Low_complexity 1 76 0 2125 108 46 38 chr3 99099152 99099524 -128425054 + THE1C LTR MaLR 1 375 0 22 35 0 0 chr3 99099554 99099583 -128424995 + AT_rich Low_complexity Low_complexity 1 29 0 896 221 18 71 chr3 99100967 99101248 -128423330 + MLT2B1 LTR ERVL 1 266 -254 1046 173 72 5 chr3 99101290 99101498 -128423080 + MER46B DNA MER2_type 2 98 -138 1646 222 33 5 chr3 99101551 99101948 -128422630 + L1MB7 LINE L1 5768 6175 -9 318 291 55 9 chr3 99101959 99102069 -128422509 - L2 LINE L2 -40 3273 3159 876 227 39 101 chr3 99102118 99102505 -128422073 + MLT1A2 LTR MaLR 1 363 -11 1661 168 31 3 chr3 99102534 99102861 -128421717 + L1MA4 LINE L1 5954 6289 -11 416 368 33 31 chr3 99102896 99103225 -128421353 - L2 LINE L2 -261 3052 2726 217 229 21 0 chr3 99103232 99103280 -128421298 + (CAGGA)n Simple_repeat Simple_repeat 2 50 0 22 0 0 0 chr3 99103515 99103537 -128421041 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 99103607 99103629 -128420949 + AT_rich Low_complexity Low_complexity 1 22 0 533 330 52 4 chr3 99103667 99103897 -128420681 + MIR SINE MIR 8 248 -14 421 223 91 8 chr3 99104297 99104418 -128420160 + MIR SINE MIR 119 249 -13 260 264 66 41 chr3 99105217 99105338 -128419240 - MER110 LTR ERV1 -6 485 362 2312 83 0 0 chr3 99106897 99107198 -128417380 - AluSc SINE Alu -4 305 5 180 0 0 0 chr3 99108192 99108212 -128416366 + (TG)n Simple_repeat Simple_repeat 1 20 0 308 311 89 72 chr3 99108469 99108649 -128415929 + HAL1 LINE L1 17 199 -2308 1533 157 12 0 chr3 99108751 99108999 -128415579 + AluJb SINE Alu 1 251 -61 29 0 0 0 chr3 99109007 99109036 -128415542 + AT_rich Low_complexity Low_complexity 1 29 0 440 223 48 0 chr3 99109300 99109403 -128415175 - MLT1D LTR MaLR 0 505 398 568 276 116 20 chr3 99110867 99111066 -128413512 + MIR SINE MIR 15 232 -30 2670 26 3 0 chr3 99111419 99111728 -128412850 - AluY SINE Alu -1 310 1 267 211 132 0 chr3 99111975 99112051 -128412527 + MLT1I LTR MaLR 1 86 -323 451 282 145 35 chr3 99112222 99112449 -128412129 - LTR40b LTR ERVL -8 454 203 286 153 0 34 chr3 99112637 99112696 -128411882 - LTR40a LTR ERVL -372 147 91 258 32 0 0 chr3 99114794 99114825 -128409753 + (TAA)n Simple_repeat Simple_repeat 1 31 0 306 0 0 0 chr3 99115578 99115612 -128408966 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr3 99115669 99115690 -128408888 + AT_rich Low_complexity Low_complexity 1 21 0 347 314 51 17 chr3 99115843 99115961 -128408617 + L2 LINE L2 3142 3263 -9 2166 120 0 0 chr3 99115963 99116262 -128408316 + AluSx SINE Alu 1 299 -13 657 310 97 29 chr3 99116509 99117058 -128407520 - L1MC4a LINE L1 -1905 5903 5318 22 35 0 0 chr3 99117141 99117170 -128407408 + AT_rich Low_complexity Low_complexity 1 29 0 320 167 26 0 chr3 99117173 99117226 -128407352 + (TATG)n Simple_repeat Simple_repeat 1 58 -22 225 0 0 0 chr3 99117226 99117251 -128407327 + (CA)n Simple_repeat Simple_repeat 2 26 0 320 167 26 0 chr3 99117251 99117275 -128407303 + (TATG)n Simple_repeat Simple_repeat 58 80 0 1927 189 33 32 chr3 99117330 99117879 -128406699 - MLT2A2 LTR ERVL 0 554 1 28 61 0 0 chr3 99118023 99118072 -128406506 + AT_rich Low_complexity Low_complexity 1 49 0 414 53 0 0 chr3 99118689 99118746 -128405832 + (TG)n Simple_repeat Simple_repeat 2 58 0 1993 63 3 35 chr3 99118746 99119023 -128405555 - AluY SINE Alu -25 286 17 22 56 0 0 chr3 99120062 99120098 -128404480 + AT_rich Low_complexity Low_complexity 1 36 0 342 298 11 11 chr3 99121016 99121110 -128403468 + L1MA10 LINE L1 898 991 -6046 2364 107 23 0 chr3 99121111 99121458 -128403120 - THE1A LTR MaLR 0 355 1 10649 112 8 15 chr3 99121458 99123050 -128401528 - THE1A-int LTR MaLR 0 1580 1 2513 95 9 0 chr3 99123054 99123401 -128401177 - THE1A LTR MaLR -5 350 1 2434 272 115 31 chr3 99123624 99125724 -128398854 + L1MA10 LINE L1 1589 3414 -3692 324 327 0 0 chr3 99125964 99126065 -128398513 + L1MC4 LINE L1 6603 6703 -1339 5912 222 60 64 chr3 99126069 99127311 -128397267 + L1MA10 LINE L1 3403 4634 -2472 2283 111 3 0 chr3 99127311 99127618 -128396960 + AluSp SINE Alu 2 309 -4 5912 222 60 64 chr3 99127618 99128488 -128396090 + L1MA10 LINE L1 4634 5506 -1600 1189 150 66 0 chr3 99128490 99128747 -128395831 - L1M3 LINE L1 -679 5489 5218 1563 233 92 37 chr3 99128747 99129453 -128395125 + L1MA10 LINE L1 6489 7246 -48 673 204 108 0 chr3 99130071 99130087 -128394491 + L1MA10 LINE L1 6148 6161 -173 180 77 0 0 chr3 99130087 99130113 -128394465 + (TAA)n Simple_repeat Simple_repeat 2 27 0 673 204 108 0 chr3 99130113 99130263 -128394315 + L1MA10 LINE L1 6161 6332 -2 335 368 80 0 chr3 99130300 99130425 -128394153 - L2 LINE L2 -5 3267 3133 349 293 111 33 chr3 99130558 99130739 -128393839 + L2 LINE L2 1324 1518 -1796 7006 147 14 9 chr3 99130742 99131919 -128392659 + HSMAR2 DNA Mariner 2 1183 -119 336 174 145 0 chr3 99131918 99131987 -128392591 + MER45B DNA AcHobo 407 485 -555 * 548 118 0 0 chr3 99132024 99132117 -128392461 + HSMAR2 DNA Mariner 1185 1277 -25 209 380 28 17 chr3 99132139 99132318 -128392260 + L2 LINE L2 1519 1699 -1615 1586 234 39 3 chr3 99132318 99132677 -128391901 - MER45B DNA AcHobo -342 698 327 355 228 13 0 chr3 99132690 99132769 -128391809 + MER45B DNA AcHobo 250 329 -711 890 319 17 10 chr3 99132780 99133072 -128391506 - MER45B DNA AcHobo -735 305 12 252 216 0 20 chr3 99133086 99133137 -128391441 + L2 LINE L2 2486 2535 -779 1922 67 8 4 chr3 99133137 99133391 -128391187 - L1PA4 LINE L1 -123 6032 5778 560 60 0 36 chr3 99133362 99133446 -128391132 + L1PA3 LINE L1 6072 6152 -3 * 896 334 73 47 chr3 99133447 99134169 -128390409 + L2 LINE L2 2530 3269 -44 4980 171 36 22 chr3 99134994 99136593 -128387985 - L1PA15 LINE L1 -6 6159 4551 5892 99 16 13 chr3 99136594 99138447 -128386131 - L1PA14 LINE L1 -1 6160 4310 1538 264 79 32 chr3 99138530 99139211 -128385367 + L1MC4 LINE L1 6930 7642 -400 561 222 8 0 chr3 99139230 99139347 -128385231 + LTR40a LTR ERVL 8 125 -394 1997 128 7 3 chr3 99139350 99139655 -128384923 - AluSq SINE Alu -7 306 1 258 196 0 20 chr3 99139764 99139815 -128384763 + LTR40a LTR ERVL 451 500 -19 460 307 32 0 chr3 99139826 99140015 -128384563 + L1MC4 LINE L1 7707 7901 -141 22 35 0 0 chr3 99140052 99140081 -128384497 + AT_rich Low_complexity Low_complexity 1 29 0 2371 77 0 6 chr3 99140094 99140407 -128384171 + AluY SINE Alu 1 311 0 6320 41 0 0 chr3 99141181 99141942 -128382636 - L1PA4 LINE L1 -8 6147 5387 279 54 0 0 chr3 99142529 99142566 -128382012 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 342 302 8 31 chr3 99146208 99146337 -128378241 + MLT1K LTR MaLR 357 482 -106 1940 203 113 16 chr3 99146935 99147358 -128377220 + Tigger4(Zombi) DNA MER2_type 2 465 -2266 1409 211 0 21 chr3 99147358 99147637 -128376941 + AluJb SINE Alu 1 273 -39 327 104 0 0 chr3 99147645 99147693 -128376885 + (TAAA)n Simple_repeat Simple_repeat 2 49 0 266 246 0 0 chr3 99147700 99147761 -128376817 + Tigger4(Zombi) DNA MER2_type 471 531 -2200 * 708 230 25 0 chr3 99147756 99147917 -128376661 + Tigger4(Zombi) DNA MER2_type 2567 2731 0 365 217 19 25 chr3 99147920 99148081 -128376497 + (TTATA)n Simple_repeat Simple_repeat 3 162 0 38 22 0 0 chr3 99148085 99148130 -128376448 + AT_rich Low_complexity Low_complexity 1 45 0 642 213 7 0 chr3 99148463 99148599 -128375979 + L1MD2 LINE L1 5446 5582 -660 574 115 0 0 chr3 99148600 99148687 -128375891 + (TTTC)n Simple_repeat Simple_repeat 4 180 0 1577 173 88 0 chr3 99148687 99148970 -128375608 - AluSg SINE Alu 0 397 3 2397 244 64 16 chr3 99148971 99149505 -128375073 + L1MD2 LINE L1 5583 6163 -196 186 43 0 0 chr3 99149505 99149528 -128375050 + (CA)n Simple_repeat Simple_repeat 2 24 0 2397 244 64 16 chr3 99149528 99149728 -128374850 + L1MD2 LINE L1 6163 6352 -7 204 209 0 23 chr3 99149956 99149999 -128374579 + (TG)n Simple_repeat Simple_repeat 2 43 0 225 0 0 0 chr3 99150480 99150505 -128374073 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 351 0 0 0 chr3 99150504 99150543 -128374035 + (GA)n Simple_repeat Simple_repeat 2 40 0 2795 158 16 10 chr3 99151046 99151189 -128373389 - Tigger1 DNA MER2_type -1172 1246 1105 387 0 0 0 chr3 99151189 99151232 -128373346 + (TA)n Simple_repeat Simple_repeat 1 43 0 1930 138 0 0 chr3 99151232 99151514 -128373064 - AluSx SINE Alu -30 282 1 2795 158 16 10 chr3 99151514 99151858 -128372720 - Tigger1 DNA MER2_type -1312 1106 755 31 0 0 0 chr3 99151859 99151890 -128372688 + AT_rich Low_complexity Low_complexity 1 31 0 2242 138 24 11 chr3 99152179 99152549 -128372029 - THE1C LTR MaLR 0 375 1 7260 154 59 41 chr3 99152549 99154102 -128370476 - THE1C-int LTR MaLR 0 1580 1 2179 153 25 11 chr3 99154104 99154470 -128370108 - THE1C LTR MaLR -2 373 3 253 391 58 12 chr3 99155641 99155899 -128368679 + L3b LINE CR1 1105 1374 -209 264 164 16 0 chr3 99155915 99155976 -128368602 + (TA)n Simple_repeat Simple_repeat 2 63 0 24 32 0 0 chr3 99158171 99158202 -128366376 + AT_rich Low_complexity Low_complexity 1 31 0 25 90 0 0 chr3 99158703 99158770 -128365808 + AT_rich Low_complexity Low_complexity 1 67 0 1898 99 16 67 chr3 99160583 99160897 -128363681 - AluSg SINE Alu -12 298 1 23 0 0 0 chr3 99162627 99162650 -128361928 + AT_rich Low_complexity Low_complexity 1 23 0 2198 89 0 46 chr3 99163496 99163822 -128360756 + AluY SINE Alu 1 311 0 207 0 0 0 chr3 99164095 99164118 -128360460 + (T)n Simple_repeat Simple_repeat 1 23 0 198 143 0 0 chr3 99164205 99164240 -128360338 + (TG)n Simple_repeat Simple_repeat 1 35 0 1734 289 105 57 chr3 99164727 99165740 -128358838 + L2 LINE L2 1605 2567 -746 3903 79 6 0 chr3 99165740 99166260 -128358318 - L1PA7 LINE L1 0 6154 5632 1734 289 105 57 chr3 99166260 99166762 -128357816 + L2 LINE L2 2567 3191 -122 1163 115 115 10 chr3 99166762 99166970 -128357608 - MER30 DNA MER1_type 0 230 1 1734 289 105 57 chr3 99166970 99167042 -128357536 + L2 LINE L2 3191 3258 -55 393 134 74 4 chr3 99167099 99167177 -128357401 - L1P3 LINE L1 -613 5559 5479 313 324 85 15 chr3 99167352 99167611 -128356967 - L1ME LINE L1 -336 5785 5509 977 245 136 16 chr3 99168056 99168379 -128356199 - MLT1A1 LTR MaLR -2 363 2 244 0 56 0 chr3 99169212 99169248 -128355330 + (TTG)n Simple_repeat Simple_repeat 2 39 0 587 295 215 43 chr3 99169577 99170320 -128354258 - L3 LINE CR1 -53 1524 654 338 345 123 26 chr3 99170854 99171205 -128353373 + MLT1J2 LTR MaLR 66 450 0 1140 174 55 13 chr3 99171221 99171457 -128353121 - MER31B LTR ERV1 0 466 221 7051 33 0 0 chr3 99171458 99172300 -128352278 - L1PA3 LINE L1 0 6155 5314 652 221 75 66 chr3 99172305 99172531 -128352047 - MER31B LTR ERV1 -238 228 1 1980 180 9 0 chr3 99173478 99173823 -128350755 - MER7A DNA MER2_type 0 346 1 36 23 0 0 chr3 99174974 99175017 -128349561 + AT_rich Low_complexity Low_complexity 1 43 0 2008 131 0 0 chr3 99175430 99175720 -128348858 + AluSx SINE Alu 1 290 -22 358 261 84 21 chr3 99176155 99176297 -128348281 + MIR SINE MIR 112 262 0 280 349 134 17 chr3 99176741 99176973 -128347605 - MIR SINE MIR -1 261 3 26 50 0 0 chr3 99176977 99177017 -128347561 + AT_rich Low_complexity Low_complexity 1 40 0 21 57 0 0 chr3 99177268 99177303 -128347275 + AT_rich Low_complexity Low_complexity 1 35 0 2092 66 38 14 chr3 99177344 99177631 -128346947 - AluY SINE Alu -16 295 2 2335 140 98 9 chr3 99177723 99178173 -128346405 - L1PA16 LINE L1 0 6166 5677 445 147 21 42 chr3 99178173 99178268 -128346310 + L1P4 LINE L1 5654 5746 -420 362 321 48 57 chr3 99178410 99178619 -128345959 + MIR SINE MIR 29 235 -27 1853 171 33 28 chr3 99179016 99179378 -128345200 + THE1B LTR MaLR 1 364 0 599 257 244 31 chr3 99179386 99179548 -128345030 + L1MA9 LINE L1 1309 1435 -6054 1562 172 46 46 chr3 99179548 99179920 -128344658 - THE1C LTR MaLR 0 375 4 599 257 244 31 chr3 99179920 99180270 -128344308 + L1MA9 LINE L1 1435 1930 -5559 * 11134 229 37 38 chr3 99180267 99180539 -128344039 + L1MA9 LINE L1 2444 2715 -5016 1695 173 0 44 chr3 99180539 99180866 -128343712 + AluSx SINE Alu 1 314 0 11134 229 37 38 chr3 99180866 99181204 -128343374 + L1MA9 LINE L1 2715 3052 -4679 1754 141 53 11 chr3 99181204 99181487 -128343091 + AluSc SINE Alu 2 296 -13 11134 229 37 38 chr3 99181487 99181697 -128342881 + L1MA9 LINE L1 3052 3261 -4470 1376 6 0 0 chr3 99181697 99181854 -128342724 + L1PA2 LINE L1 5999 6155 0 11134 229 37 38 chr3 99181854 99181917 -128342661 + L1MA9 LINE L1 3261 3323 -4408 1328 226 45 10 chr3 99181917 99182205 -128342373 - AluJo SINE Alu -12 300 3 11134 229 37 38 chr3 99182205 99184925 -128339653 + L1MA9 LINE L1 3323 6026 -1705 2465 21 0 0 chr3 99184925 99185214 -128339364 + L1PA2 LINE L1 5866 6154 -1 11134 229 37 38 chr3 99185214 99186215 -128338363 + L1MA9 LINE L1 6026 7027 -704 4598 149 19 17 chr3 99186209 99187042 -128337536 + L1PB4 LINE L1 5317 6151 -5 * 3024 181 57 27 chr3 99187034 99187240 -128337338 + L1MA9 LINE L1 7011 7209 -522 * 216 0 0 0 chr3 99187240 99187264 -128337314 + (CA)n Simple_repeat Simple_repeat 1 24 0 3024 181 57 27 chr3 99187264 99187757 -128336821 + L1MA9 LINE L1 7209 7731 0 2345 142 34 15 chr3 99188393 99188781 -128335797 + MSTA LTR MaLR 1 399 -29 2785 27 0 0 chr3 99188781 99189110 -128335468 - L1PA3 LINE L1 -2 6153 5825 2345 142 34 15 chr3 99189110 99189130 -128335448 + MSTA LTR MaLR 399 417 -11 7607 209 30 15 chr3 99189138 99189569 -128335009 + MSTA-int LTR MaLR 2 425 -1226 180 0 0 0 chr3 99189569 99189589 -128334989 + (CAA)n Simple_repeat Simple_repeat 2 21 0 7607 209 30 15 chr3 99189589 99190742 -128333836 + MSTA-int LTR MaLR 425 1609 -42 1154 161 64 45 chr3 99190742 99191009 -128333569 + MSTA LTR MaLR 157 428 0 369 343 107 55 chr3 99192946 99193445 -128331133 + L2 LINE L2 2753 3283 -30 3280 40 0 0 chr3 99193445 99193846 -128330732 - L1PA4 LINE L1 -1 6154 5754 369 343 107 55 chr3 99193846 99193878 -128330700 + L2 LINE L2 3283 3312 -1 3677 60 4 2 chr3 99194271 99194740 -128329838 - L1PA7 LINE L1 0 6154 5685 21 36 0 0 chr3 99194896 99194924 -128329654 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 99194949 99194977 -128329601 + AT_rich Low_complexity Low_complexity 1 28 0 285 75 0 0 chr3 99194987 99195027 -128329551 + (TA)n Simple_repeat Simple_repeat 2 41 0 27 0 0 0 chr3 99195163 99195190 -128329388 + AT_rich Low_complexity Low_complexity 1 27 0 302 136 0 0 chr3 99196439 99196483 -128328095 + L1PA10 LINE L1 6104 6147 -21 486 188 19 0 chr3 99196483 99196643 -128327935 + (TA)n Simple_repeat Simple_repeat 1 163 0 189 250 167 17 chr3 99196654 99196714 -128327864 + L2 LINE L2 3002 3070 -202 390 292 0 0 chr3 99197081 99197177 -128327401 + MER5A DNA MER1_type 10 105 -84 225 0 0 0 chr3 99197562 99197587 -128326991 + (TG)n Simple_repeat Simple_repeat 2 26 0 31 0 0 0 chr3 99200423 99200454 -128324124 + AT_rich Low_complexity Low_complexity 1 31 0 262 318 0 0 chr3 99200547 99200610 -128323968 + MIR SINE MIR 35 97 -165 267 181 24 12 chr3 99200710 99200793 -128323785 + (TA)n Simple_repeat Simple_repeat 2 85 0 309 139 78 12 chr3 99200821 99200987 -128323591 + (TA)n Simple_repeat Simple_repeat 2 178 0 213 303 26 26 chr3 99301766 99301842 -128222736 - L2 LINE L2 0 3313 3238 218 345 103 14 chr3 99302926 99303071 -128221507 - L2 LINE L2 -578 2736 2579 851 221 8 78 chr3 99303179 99303423 -128221155 + AluJo SINE Alu 3 229 -83 264 100 0 0 chr3 99303425 99303465 -128221113 + FLAM_A SINE Alu 20 59 -73 588 216 0 0 chr3 99303465 99303581 -128220997 + AluJb SINE Alu 158 273 -39 543 117 0 68 chr3 99304178 99304265 -128220313 - L1P5 LINE L1 -368 5788 5707 991 201 0 0 chr3 99304265 99304449 -128220129 + L1PB4 LINE L1 5973 6156 0 543 117 0 68 chr3 99304449 99304464 -128220114 - L1P5 LINE L1 -449 5707 5693 227 281 60 65 chr3 99304629 99304814 -128219764 + HAL1 LINE L1 2320 2503 -4 1918 138 30 24 chr3 99304856 99305190 -128219388 - MER44D DNA MER2_type 0 705 370 1363 218 71 7 chr3 99305187 99305481 -128219097 - MER44D DNA MER2_type -391 314 2 * 213 205 0 0 chr3 99306772 99306811 -128217767 + (TGAA)n Simple_repeat Simple_repeat 1 39 0 4106 156 89 13 chr3 99308861 99309420 -128215158 + MER4D LTR ERV1 1 647 -256 1717 107 125 25 chr3 99309420 99309700 -128214878 + AluSq SINE Alu 5 312 -1 4106 156 89 13 chr3 99309700 99309979 -128214599 + MER4D LTR ERV1 647 903 0 808 310 53 24 chr3 99310614 99311065 -128213513 + LTR16B LTR ERVL 1 464 0 21 36 0 0 chr3 99311633 99311661 -128212917 + AT_rich Low_complexity Low_complexity 1 28 0 259 274 39 39 chr3 99312674 99312776 -128211802 - L2 LINE L2 -1022 2292 2191 296 283 97 76 chr3 99312847 99312992 -128211586 + MIR SINE MIR 9 156 -106 368 248 168 97 chr3 99313028 99313338 -128211240 + MER46C DNA MER2_type 7 338 0 2235 110 2 95 chr3 99314220 99314621 -128209957 - THE1B LTR MaLR 0 364 1 7452 25 5 0 chr3 99315340 99316364 -128208214 + L1PA3 LINE L1 5138 6165 0 24 0 0 0 chr3 99317130 99317154 -128207424 + AT_rich Low_complexity Low_complexity 1 24 0 831 65 0 0 chr3 99317317 99317425 -128207153 - L1PA2 LINE L1 0 6155 6048 637 307 21 29 chr3 99317916 99318154 -128206424 - MIR SINE MIR -24 238 3 24 0 0 0 chr3 99319144 99319168 -128205410 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 99319252 99319273 -128205305 + AT_rich Low_complexity Low_complexity 1 21 0 322 256 12 0 chr3 99319679 99319761 -128204817 - MLT1J2 LTR MaLR 0 450 368 413 282 57 0 chr3 99319904 99320028 -128204550 - MLT1J2 LTR MaLR -305 145 15 325 342 0 7 chr3 99325003 99325298 -128199280 - AluSx SINE Alu -9 293 1 261 0 0 0 chr3 99325585 99325614 -128198964 + (T)n Simple_repeat Simple_repeat 1 29 0 211 308 13 0 chr3 99325945 99326023 -128198555 + (TA)n Simple_repeat Simple_repeat 1 79 0 423 337 24 0 chr3 99326580 99326749 -128197829 + MIR SINE MIR 20 192 -70 252 0 0 0 chr3 99327534 99327562 -128197016 + (T)n Simple_repeat Simple_repeat 1 28 0 218 303 13 0 chr3 99327893 99327969 -128196609 + (TA)n Simple_repeat Simple_repeat 2 78 0 423 338 18 31 chr3 99328529 99328751 -128195827 + MIR SINE MIR 20 238 -24 2110 65 0 4 chr3 99328845 99329106 -128195472 - AluY SINE Alu -19 292 33 268 311 96 34 chr3 99329158 99329335 -128195243 - MIR SINE MIR -1 261 74 245 246 0 0 chr3 99330366 99330423 -128194155 + CT-rich Low_complexity Low_complexity 2 58 0 241 248 10 30 chr3 99332277 99332378 -128192200 + (TAAA)n Simple_repeat Simple_repeat 4 102 0 189 0 0 0 chr3 99332671 99332692 -128191886 + (TCTA)n Simple_repeat Simple_repeat 3 23 0 721 197 0 0 chr3 99332709 99332831 -128191747 - FLAM_A SINE Alu -11 122 1 525 221 68 37 chr3 99332904 99333024 -128191554 - MER5C DNA MER1_type 0 324 194 2371 96 3 0 chr3 99333024 99333336 -128191242 + AluSp SINE Alu 1 313 0 525 221 68 37 chr3 99333336 99333405 -128191173 - MER5C DNA MER1_type -130 194 129 6242 86 3 8 chr3 99333590 99334704 -128189874 - L1PA11 LINE L1 -2 6172 5044 439 134 103 21 chr3 99334773 99334870 -128189708 - MER5C DNA MER1_type -219 105 1 182 365 40 0 chr3 99335619 99335693 -128188885 + MIR3 SINE MIR 91 167 -41 2094 139 19 30 chr3 99335732 99336100 -128188478 + THE1B LTR MaLR 1 364 0 206 256 0 0 chr3 99336131 99336174 -128188404 + (TATATG)n Simple_repeat Simple_repeat 5 47 0 663 176 25 0 chr3 99337260 99337415 -128187163 + FLAM_A SINE Alu 1 158 0 985 161 71 161 chr3 99337428 99337602 -128186976 + AluJb SINE Alu 11 147 -165 2010 129 7 0 chr3 99337602 99337935 -128186643 + AluSx SINE Alu 5 339 0 985 161 71 161 chr3 99337935 99338080 -128186498 + AluJb SINE Alu 147 303 -9 285 308 28 9 chr3 99339596 99339703 -128184875 + MIR SINE MIR 70 178 -84 311 319 76 35 chr3 99340150 99340294 -128184284 - L2 LINE L2 -16 3256 3107 844 284 124 5 chr3 99340735 99341103 -128183475 - MLT1H1 LTR MaLR -2 588 139 291 228 32 38 chr3 99341200 99341358 -128183220 - L1MC5 LINE L1 -312 7649 7493 240 289 121 48 chr3 99341364 99341530 -128183048 - L1MC4a LINE L1 -458 7350 7238 305 311 42 52 chr3 99341648 99341860 -128182718 - L1MC5 LINE L1 -743 7218 7009 21 36 0 0 chr3 99341912 99341940 -128182638 + AT_rich Low_complexity Low_complexity 1 28 0 976 288 132 31 chr3 99341987 99342856 -128181722 - L1MC4a LINE L1 -865 6943 5987 225 0 0 0 chr3 99342857 99342882 -128181696 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 221 357 138 36 chr3 99343204 99343400 -128181178 - L2 LINE L2 -385 2929 2714 21 0 0 0 chr3 99343676 99343697 -128180881 + AT_rich Low_complexity Low_complexity 1 21 0 2194 116 3 0 chr3 99343735 99344036 -128180542 - AluSp SINE Alu -10 303 2 35785 99 8 12 chr3 99344478 99350639 -128173939 + L1PA6 LINE L1 12 6152 -2 1943 186 75 65 chr3 99350738 99351243 -128173335 + MER67D LTR ERV1 1 510 -4 29 0 0 0 chr3 99351684 99351713 -128172865 + AT_rich Low_complexity Low_complexity 1 29 0 205 306 48 0 chr3 99351729 99351791 -128172787 - MIR SINE MIR -110 152 88 340 289 0 19 chr3 99353024 99353128 -128171450 + MLT1H LTR MaLR 431 532 -17 26 0 0 0 chr3 99353236 99353262 -128171316 + AT_rich Low_complexity Low_complexity 1 26 0 371 357 41 10 chr3 99353335 99353531 -128171047 - L1MC4a LINE L1 -1885 5923 5722 240 298 170 14 chr3 99353655 99353796 -128170782 - MIR SINE MIR -54 208 46 223 313 0 0 chr3 99353963 99354027 -128170551 - L2 LINE L2 0 3313 3250 1651 201 41 81 chr3 99354094 99354601 -128169977 + MER34B LTR ERV1 11 497 -68 4879 189 52 9 chr3 99354623 99355897 -128168681 - L1MA4A LINE L1 -6 6999 5781 6770 74 28 1 chr3 99355897 99356771 -128167807 - MER11D LTR ERVK 0 897 1 4879 189 52 9 chr3 99356771 99356946 -128167632 - L1MA4A LINE L1 -1224 5781 5615 252 77 0 0 chr3 99356946 99356985 -128167593 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 4879 189 52 9 chr3 99356985 99357148 -128167430 - L1MA4A LINE L1 -1390 5615 5318 1956 172 32 19 chr3 99357147 99357994 -128166584 - L1MA4A LINE L1 -4101 2748 1799 * 341 61 0 61 chr3 99358009 99358075 -128166503 - L1PA6 LINE L1 -1 6153 6092 9393 76 39 1 chr3 99358198 99358569 -128166009 - L1P2 LINE L1 -471 5683 5328 238 67 44 0 chr3 99358569 99358614 -128165964 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 9393 76 39 1 chr3 99358614 99359823 -128164755 - L1P2 LINE L1 -826 5328 4071 8268 112 41 2 chr3 99359842 99361029 -128163549 + THE1A-int LTR MaLR 348 1580 0 2256 127 6 25 chr3 99361029 99361390 -128163188 + THE1A LTR MaLR 1 354 -1 426 276 19 45 chr3 99361457 99361613 -128162965 - MIR SINE MIR -27 235 84 281 325 58 50 chr3 99362127 99362247 -128162331 - L2 LINE L2 0 3313 3193 300 203 0 0 chr3 99362289 99362348 -128162230 - MLT1H LTR MaLR 0 549 491 2042 126 0 10 chr3 99362798 99363100 -128161478 + AluSg SINE Alu 1 299 -11 663 295 124 23 chr3 99363113 99363595 -128160983 + LTR50 LTR ERVL 341 791 -4 225 157 0 98 chr3 99363584 99363635 -128160943 - MLT1I LTR MaLR -270 139 94 * 519 258 174 0 chr3 99363835 99364013 -128160565 - MIR SINE MIR -1 261 53 6193 193 122 33 chr3 99364078 99365619 -128158959 + MER52A LTR ERV1 1 1755 0 1244 75 0 23 chr3 99365709 99365883 -128158695 - L1PA8 LINE L1 -8 6164 5995 276 30 0 0 chr3 99366335 99366368 -128158210 + (TG)n Simple_repeat Simple_repeat 1 33 0 2323 86 0 10 chr3 99366839 99367153 -128157425 - AluY SINE Alu 0 311 1 21 0 0 0 chr3 99367668 99367689 -128156889 + AT_rich Low_complexity Low_complexity 1 21 0 1163 73 0 6 chr3 99368034 99368198 -128156380 + (GAA)n Simple_repeat Simple_repeat 2 164 0 22 56 0 0 chr3 99368767 99368803 -128155775 + AT_rich Low_complexity Low_complexity 1 36 0 4204 33 14 0 chr3 99369679 99370189 -128154389 - L1PA4 LINE L1 -347 5808 5292 2518 51 0 0 chr3 99370189 99370499 -128154079 + L1PA4 LINE L1 5837 6149 -6 37 0 0 0 chr3 99370506 99370543 -128154035 + AT_rich Low_complexity Low_complexity 1 37 0 798 204 0 0 chr3 99370634 99370786 -128153792 - FRAM SINE Alu -11 165 14 21 36 0 0 chr3 99371061 99371089 -128153489 + AT_rich Low_complexity Low_complexity 1 28 0 228 254 17 0 chr3 99371152 99371211 -128153367 - L1M4 LINE L1 -1983 4163 4104 460 344 61 39 chr3 99371540 99371950 -128152628 + ERVL LTR ERVL 1255 1673 -4091 22 0 0 0 chr3 99372052 99372074 -128152504 + AT_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chr3 99372274 99372299 -128152279 + (A)n Simple_repeat Simple_repeat 1 25 0 728 238 6 18 chr3 99372622 99372786 -128151792 + MLT1A2 LTR MaLR 1 162 -212 511 140 11 0 chr3 99372798 99372891 -128151687 + CT-rich Low_complexity Low_complexity 2 95 0 588 239 8 8 chr3 99372981 99373111 -128151467 + MLT1A2 LTR MaLR 243 372 -2 1224 270 71 32 chr3 99373112 99373520 -128151058 - MLT2B1 LTR ERVL -96 424 1 258 312 13 0 chr3 99373535 99373612 -128150966 + ERVL LTR ERVL 3783 3860 -1904 1187 358 68 42 chr3 99373722 99374346 -128150232 + ERVL LTR ERVL 3923 4530 -1234 1865 174 10 10 chr3 99374346 99374651 -128149927 + AluSx SINE Alu 1 305 -7 1187 358 68 42 chr3 99374651 99375385 -128149193 + ERVL LTR ERVL 4530 5345 -419 303 357 43 16 chr3 99375425 99375664 -128148914 + L1M3a LINE L1 346 770 -5185 295 330 35 25 chr3 99375720 99375917 -128148661 + L1MA7 LINE L1 2072 2270 -5216 2205 270 28 23 chr3 99375972 99377329 -128147249 + L1M3a LINE L1 335 1707 -4328 710 115 39 0 chr3 99377329 99377433 -128147145 + AluSg/x SINE Alu 188 295 -15 7981 61 7 64 chr3 99377494 99378616 -128145962 + SVA Other Other 327 1384 -2 206 295 126 0 chr3 99378627 99378722 -128145856 + L3 LINE CR1 1180 1286 -291 2145 128 10 0 chr3 99378846 99379152 -128145426 + AluSx SINE Alu 1 309 -3 8979 213 81 56 chr3 99379185 99379675 -128144903 + L1MA7 LINE L1 2905 3381 -4184 2118 133 3 0 chr3 99379675 99379984 -128144594 + AluSg SINE Alu 1 310 0 8979 213 81 56 chr3 99379984 99380249 -128144329 + L1MA7 LINE L1 3381 3638 -3927 1321 219 14 27 chr3 99380249 99380541 -128144037 + AluJo SINE Alu 1 288 -24 8979 213 81 56 chr3 99380541 99383002 -128141576 + L1MA7 LINE L1 3638 6225 -1340 1032 214 45 8 chr3 99383001 99383267 -128141311 + L1MA8 LINE L1 6012 6287 -4 * 2261 231 65 31 chr3 99383293 99384106 -128140472 + L1MA7 LINE L1 6207 7232 -478 243 0 0 0 chr3 99384106 99384133 -128140445 + (TA)n Simple_repeat Simple_repeat 1 27 0 2261 231 65 31 chr3 99384133 99384452 -128140126 + L1MA7 LINE L1 7232 7539 -171 25 31 0 0 chr3 99385501 99385533 -128139045 + AT_rich Low_complexity Low_complexity 1 32 0 494 261 42 103 chr3 99386077 99386407 -128138171 + HAL1b LINE L1 304 613 -735 206 245 20 0 chr3 99386888 99386937 -128137641 + GA-rich Low_complexity Low_complexity 5 54 0 2046 139 124 23 chr3 99387353 99387741 -128136837 - MSTA LTR MaLR -1 427 1 267 303 40 0 chr3 99387835 99387911 -128136667 + L2 LINE L2 3192 3270 -2 285 250 167 0 chr3 99388257 99388341 -128136237 - L1ME LINE L1 -517 5604 5507 310 141 0 84 chr3 99388527 99388598 -128135980 + MLT-int LTR MaLR 972 1036 -699 299 220 180 0 chr3 99388999 99389099 -128135479 + L1M4b LINE L1 96 213 -6646 21 0 0 0 chr3 99389474 99389495 -128135083 + AT_rich Low_complexity Low_complexity 1 21 0 2467 174 42 91 chr3 99389508 99390170 -128134408 - L1MB1 LINE L1 0 6168 5539 2044 97 4 4 chr3 99390565 99390844 -128133734 + AluSx SINE Alu 1 279 -33 384 40 0 0 chr3 99390844 99390894 -128133684 + (CA)n Simple_repeat Simple_repeat 1 50 0 192 97 0 0 chr3 99391228 99391259 -128133319 + (T)n Simple_repeat Simple_repeat 1 31 0 1721 209 16 14 chr3 99391386 99391750 -128132828 - MLT1A1 LTR MaLR 0 365 1 464 113 0 0 chr3 99392093 99392208 -128132370 - AluSg/x SINE Alu 0 332 218 498 135 0 0 chr3 99392233 99392307 -128132271 + AluJ/FLAM SINE Alu 1 74 -238 180 0 0 0 chr3 99392456 99392476 -128132102 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 218 349 28 0 chr3 99396281 99396390 -128128188 + MIR SINE MIR 66 177 -85 269 376 16 16 chr3 99397562 99397687 -128126891 + L3 LINE CR1 701 825 -752 434 208 10 10 chr3 99398539 99398640 -128125938 + MLT1K LTR MaLR 488 588 0 922 180 198 234 chr3 99398930 99399201 -128125377 + MLT2B1 LTR ERVL 2 349 -171 2429 174 46 63 chr3 99399201 99399725 -128124853 - MLT2B2 LTR ERVL 0 515 1 922 180 198 234 chr3 99399725 99399856 -128124722 + MLT2B1 LTR ERVL 349 483 -37 533 205 0 0 chr3 99399857 99399974 -128124604 + L1 LINE L1 4938 5054 -1092 635 140 44 0 chr3 99399974 99400088 -128124490 + AluSg/x SINE Alu 187 305 -4 1263 55 3 14 chr3 99400092 99400382 -128124196 + (GAAA)n Simple_repeat Simple_repeat 1 286 0 927 195 108 47 chr3 99400395 99400672 -128123906 + L1 LINE L1 5065 5358 -788 941 189 24 38 chr3 99400913 99401125 -128123453 - MER3 DNA MER1_type 0 209 1 1721 175 0 11 chr3 99401260 99401545 -128123033 - AluJb SINE Alu -28 284 3 6000 139 28 31 chr3 99401558 99401807 -128122771 - L1MA1 LINE L1 0 6302 6054 2401 64 0 0 chr3 99401807 99402103 -128122475 - AluY SINE Alu -15 296 1 6000 139 28 31 chr3 99402103 99403100 -128121478 - L1MA1 LINE L1 -248 6054 5040 1298 40 0 27 chr3 99403100 99403327 -128121251 + (TTTC)n Simple_repeat Simple_repeat 1 220 0 605 139 43 9 chr3 99403334 99403449 -128121129 - AluSg/x SINE Alu -4 305 187 400 198 0 0 chr3 99403453 99403544 -128121034 - L1MA1 LINE L1 -1095 5051 4961 2513 168 40 88 chr3 99403674 99404301 -128120277 - L1MB1 LINE L1 -154 6035 5439 1296 242 49 6 chr3 99404301 99404628 -128119950 - MLT1A1 LTR MaLR 0 365 25 799 145 0 0 chr3 99404637 99404775 -128119803 - L1MB1 LINE L1 -856 5444 5307 273 200 213 0 chr3 99404769 99404844 -128119734 + L1 LINE L1 4997 5087 -1059 * 25 0 0 0 chr3 99405496 99405521 -128119057 + AT_rich Low_complexity Low_complexity 1 25 0 2321 307 79 32 chr3 99405639 99406666 -128117912 + L1M4 LINE L1 14 1088 -5771 291 325 0 0 chr3 99406668 99406748 -128117830 + L1M4 LINE L1 1123 1202 -5657 524 270 19 46 chr3 99406761 99407024 -128117554 - L1M4 LINE L1 -4950 1592 1337 * 1154 262 45 88 chr3 99407021 99408387 -128116191 + L1M4 LINE L1 1594 2878 -3766 1480 168 16 23 chr3 99408387 99408643 -128115935 - AluJb SINE Alu -52 260 7 1154 262 45 88 chr3 99408643 99408862 -128115716 + L1M4 LINE L1 2878 3105 -3539 389 121 0 0 chr3 99408916 99408974 -128115604 + MSTB2 LTR MaLR 400 457 0 3886 248 118 78 chr3 99408976 99410644 -128113934 + MSTC-int LTR MaLR 2 1735 0 1153 217 146 13 chr3 99410644 99411022 -128113556 + MSTC LTR MaLR 1 428 0 548 278 0 21 chr3 99411022 99411209 -128113369 + L1M4 LINE L1 5182 5364 -1280 1293 195 50 43 chr3 99411307 99411628 -128112950 + AluJo SINE Alu 1 323 0 1965 84 3 84 chr3 99413284 99413643 -128110935 - AluSx SINE Alu 0 334 1 180 262 24 0 chr3 99413677 99413719 -128110859 + MIR3 SINE MIR 162 204 -4 2063 118 9 27 chr3 99413957 99414287 -128110291 + THE1A LTR MaLR 1 324 -31 10338 54 5 1 chr3 99414287 99416363 -128108215 - L1PA5 LINE L1 0 6154 4071 8181 111 44 2 chr3 99416382 99417566 -128107012 + THE1A-int LTR MaLR 348 1580 0 2110 133 8 28 chr3 99417566 99417927 -128106651 + THE1A LTR MaLR 1 354 -1 426 276 19 45 chr3 99417994 99418150 -128106428 - MIR SINE MIR -27 235 84 281 325 58 50 chr3 99418664 99418784 -128105794 - L2 LINE L2 0 3313 3193 300 203 0 0 chr3 99418826 99418885 -128105693 - MLT1H LTR MaLR 0 549 491 308 303 50 10 chr3 99420011 99420110 -128104468 + MER5A DNA MER1_type 4 106 -83 261 266 0 0 chr3 99420505 99420599 -128103979 + (TA)n Simple_repeat Simple_repeat 1 94 0 23 0 0 0 chr3 99420643 99420666 -128103912 + AT_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr3 99420821 99420871 -128103707 + AT_rich Low_complexity Low_complexity 1 50 0 216 0 0 0 chr3 99421821 99421845 -128102733 + (TTTTA)n Simple_repeat Simple_repeat 1 24 0 1951 149 17 0 chr3 99421861 99422162 -128102416 + AluSx SINE Alu 3 308 -4 3016 45 5 0 chr3 99422306 99422684 -128101894 - L1PA5 LINE L1 -5 6149 5770 2065 245 35 35 chr3 99422694 99422831 -128101747 + L1M4 LINE L1 3658 3794 -2352 3643 108 21 108 chr3 99422831 99423559 -128101019 - MER4A LTR ERV1 0 664 1 2065 245 35 35 chr3 99423559 99424043 -128100535 + L1M4 LINE L1 3794 4283 -1863 2013 125 3 0 chr3 99424043 99424368 -128100210 + AluSx SINE Alu 1 326 0 2065 245 35 35 chr3 99424368 99424422 -128100156 + L1M4 LINE L1 4282 4335 -1811 1722 212 119 12 chr3 99424426 99424845 -128099733 + MLT2B1 LTR ERVL 1 464 -56 40506 71 7 4 chr3 99425688 99431735 -128092843 + L1PA5 LINE L1 15 6082 -72 34641 110 21 11 chr3 99432018 99432323 -128092255 - L1P2 LINE L1 -537 5617 5317 238 67 44 0 chr3 99432323 99432368 -128092210 + (TTTG)n Simple_repeat Simple_repeat 1 47 0 34641 110 21 11 chr3 99432368 99437643 -128086935 - L1P2 LINE L1 -837 5317 11 4242 251 82 69 chr3 99437653 99439541 -128085037 - L1M2c LINE L1 -5023 2186 240 235 229 21 52 chr3 99439672 99439768 -128084810 - L1M2c LINE L1 -6754 455 363 351 298 140 44 chr3 99440070 99440298 -128084280 - MIR SINE MIR 0 262 13 350 247 115 12 chr3 99442163 99442537 -128082041 - MER113 DNA MER1_type? -73 448 2 267 103 0 0 chr3 99443136 99443175 -128081403 + (TTTA)n Simple_repeat Simple_repeat 4 42 0 252 0 0 0 chr3 99444274 99444302 -128080276 + (A)n Simple_repeat Simple_repeat 1 28 0 24 53 0 0 chr3 99444363 99444401 -128080177 + AT_rich Low_complexity Low_complexity 1 38 0 1704 132 0 39 chr3 99445717 99446028 -128078550 - AluSq SINE Alu -14 299 1 1003 157 38 27 chr3 99446539 99446724 -128077854 + MSTA LTR MaLR 242 428 0 377 288 79 51 chr3 99446724 99447159 -128077419 - L1ME LINE L1 -461 5709 5258 446 228 67 0 chr3 99447679 99447859 -128076719 - AluSq SINE Alu -16 297 106 1715 147 8 0 chr3 99448420 99448685 -128075893 + AluSx SINE Alu 2 268 -44 588 333 60 35 chr3 99448968 99449334 -128075244 - L2 LINE L2 -3 3310 2936 26 0 0 0 chr3 99450915 99450941 -128073637 + AT_rich Low_complexity Low_complexity 1 26 0 486 264 168 0 chr3 99451739 99451894 -128072684 - MER5A DNA MER1_type 0 189 9 432 321 36 0 chr3 99452074 99452211 -128072367 - MIR3 SINE MIR -37 171 30 354 328 72 11 chr3 99453099 99453279 -128071299 - MIR SINE MIR -70 192 2 308 206 0 10 chr3 99453930 99454027 -128070551 + (CCG)n Simple_repeat Simple_repeat 2 97 0 285 167 0 0 chr3 99455241 99455295 -128069283 + A-rich Low_complexity Low_complexity 2 55 0 231 36 0 0 chr3 99456547 99456575 -128068003 + (TG)n Simple_repeat Simple_repeat 1 28 0 234 0 0 0 chr3 99457077 99457103 -128067475 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 219 36 0 0 chr3 99458493 99458521 -128066057 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 21 36 0 0 chr3 99461403 99461431 -128063147 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 99461967 99461988 -128062590 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr3 99464981 99465004 -128059574 + (T)n Simple_repeat Simple_repeat 1 23 0 335 292 77 8 chr3 99467003 99467133 -128057445 + MIR3 SINE MIR 16 154 -54 438 218 148 28 chr3 99467673 99467815 -128056763 - L2 LINE L2 0 3313 3155 189 94 0 0 chr3 99467817 99467849 -128056729 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 1899 136 7 0 chr3 99467863 99468149 -128056429 - AluSx SINE Alu -24 288 1 24 53 0 0 chr3 99468911 99468949 -128055629 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr3 99469391 99469426 -128055152 + AT_rich Low_complexity Low_complexity 1 35 0 26 50 0 0 chr3 99471245 99471285 -128053293 + AT_rich Low_complexity Low_complexity 1 40 0 330 303 69 40 chr3 99473103 99473278 -128051300 + L2 LINE L2 3134 3313 0 269 327 92 33 chr3 99473876 99474029 -128050549 + MIR3 SINE MIR 22 183 -25 211 335 56 34 chr3 99474523 99474702 -128049876 + L3b LINE CR1 1207 1389 -194 342 333 54 12 chr3 99475628 99475796 -128048782 + MIR SINE MIR 80 254 -8 2482 37 0 0 chr3 99475914 99476212 -128048366 - L1PA2 LINE L1 -1 6154 5857 212 200 0 53 chr3 99476545 99476640 -128047938 + CT-rich Low_complexity Low_complexity 3 92 0 303 28 0 0 chr3 99477639 99477675 -128046903 + (TA)n Simple_repeat Simple_repeat 2 37 0 2072 110 0 13 chr3 99477675 99477983 -128046595 - AluY SINE Alu -7 304 1 32 0 0 0 chr3 99478383 99478415 -128046163 + AT_rich Low_complexity Low_complexity 1 32 0 288 0 0 0 chr3 99478985 99479017 -128045561 + (CA)n Simple_repeat Simple_repeat 2 33 0 261 0 0 0 chr3 99479293 99479322 -128045256 + (A)n Simple_repeat Simple_repeat 1 29 0 1778 29 0 0 chr3 99481491 99481700 -128042878 + L1PA3 LINE L1 5944 6152 -3 2065 68 0 0 chr3 99481741 99482014 -128042564 + AluSp SINE Alu 36 308 0 410 73 0 0 chr3 99482120 99482175 -128042403 - AluY SINE Alu -51 260 206 240 333 33 0 chr3 99483853 99483943 -128040635 - L2 LINE L2 -2 3311 3219 367 307 29 7 chr3 99484638 99484778 -128039800 + MIR SINE MIR 119 261 -1 21 0 0 0 chr3 99485230 99485251 -128039327 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 99485264 99485285 -128039293 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr3 99485344 99485386 -128039192 + AT_rich Low_complexity Low_complexity 1 42 0 34 0 0 0 chr3 99485413 99485447 -128039131 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr3 99485547 99485577 -128039001 + AT_rich Low_complexity Low_complexity 1 30 0 3734 158 106 2 chr3 99486457 99487213 -128037365 + L1MC1 LINE L1 5448 6333 0 1967 108 0 0 chr3 99487311 99487580 -128036998 + AluSc SINE Alu 27 295 -14 1908 136 3 13 chr3 99489683 99489992 -128034586 + AluSg SINE Alu 1 306 -4 298 295 164 0 chr3 99490445 99490567 -128034011 + MIR SINE MIR 49 190 -72 24 32 0 0 chr3 99492535 99492566 -128032012 + AT_rich Low_complexity Low_complexity 1 31 0 3459 186 11 13 chr3 99494127 99494755 -128029823 + MER82 DNA MER2_type 26 652 -1 472 315 0 55 chr3 99494838 99495003 -128029575 - L3 LINE CR1 -5 1572 1417 318 50 0 0 chr3 99495048 99495088 -128029490 + (TC)n Simple_repeat Simple_repeat 2 41 0 1296 177 0 58 chr3 99495090 99495333 -128029245 - AluJo SINE Alu -52 260 32 183 222 0 0 chr3 99495682 99495727 -128028851 + (TG)n Simple_repeat Simple_repeat 2 46 0 206 274 16 0 chr3 99495727 99495789 -128028789 + (TA)n Simple_repeat Simple_repeat 1 63 0 280 131 16 16 chr3 99496273 99496334 -128028244 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 184 267 160 0 chr3 99496524 99496599 -128027979 + MIR SINE MIR 110 196 -66 26 30 0 0 chr3 99496741 99496774 -128027804 + AT_rich Low_complexity Low_complexity 1 33 0 1652 184 0 31 chr3 99497711 99498032 -128026546 - AluJo SINE Alu -1 311 1 207 281 12 49 chr3 99498771 99498853 -128025725 + MIR SINE MIR 74 152 -110 28 0 0 0 chr3 99499103 99499131 -128025447 + AT_rich Low_complexity Low_complexity 1 28 0 189 331 13 64 chr3 99499681 99499838 -128024740 - L2 LINE L2 -502 2812 2664 801 245 71 0 chr3 99500098 99500294 -128024284 - MER58A DNA MER1_type -6 218 9 207 0 0 0 chr3 99501353 99501376 -128023202 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 666 233 119 20 chr3 99502216 99502418 -128022160 - MER58A DNA MER1_type -2 222 1 21 0 0 0 chr3 99503678 99503699 -128020879 + AT_rich Low_complexity Low_complexity 1 21 0 385 330 78 0 chr3 99504307 99504422 -128020156 + MIR3 SINE MIR 37 160 -48 1900 149 0 0 chr3 99504520 99504864 -128019714 + AluSx SINE Alu 1 344 0 2598 45 0 3 chr3 99505788 99506098 -128018480 - AluY SINE Alu 0 311 3 21 36 0 0 chr3 99506398 99506426 -128018152 + AT_rich Low_complexity Low_complexity 1 28 0 839 176 167 65 chr3 99506587 99506832 -128017746 + AluJo SINE Alu 37 306 -6 34 24 0 0 chr3 99507411 99507452 -128017126 + AT_rich Low_complexity Low_complexity 1 41 0 24 91 0 0 chr3 99507651 99507717 -128016861 + AT_rich Low_complexity Low_complexity 1 66 0 23 0 0 0 chr3 99508074 99508097 -128016481 + AT_rich Low_complexity Low_complexity 1 23 0 311 237 184 13 chr3 99508646 99508722 -128015856 + MER44D DNA MER2_type 4 362 -247 231 305 0 30 chr3 99508754 99509017 -128015561 + (TTATA)n Simple_repeat Simple_repeat 1 254 0 1149 131 0 179 chr3 99509196 99509509 -128015069 + MER44D DNA MER2_type 353 609 0 446 218 275 0 chr3 99509536 99509678 -128014900 - MLT1F1 LTR MaLR -75 492 312 302 294 112 21 chr3 99509716 99509859 -128014719 - MLT1F1 LTR MaLR -381 161 6 318 233 0 0 chr3 99510024 99510110 -128014468 + (TA)n Simple_repeat Simple_repeat 1 86 0 1991 158 0 0 chr3 99511448 99511759 -128012819 + AluSx SINE Alu 2 312 0 232 379 62 12 chr3 99513110 99513271 -128011307 + MIR SINE MIR 3 171 -91 1576 89 107 4 chr3 99513328 99513553 -128011025 - AluSx SINE Alu -26 286 39 25 0 0 0 chr3 99513700 99513725 -128010853 + AT_rich Low_complexity Low_complexity 1 25 0 433 279 177 0 chr3 99513732 99513879 -128010699 - MLT1J2 LTR MaLR -4 446 274 396 258 8 67 chr3 99514078 99514140 -128010438 - MER81 DNA DNA -1 113 60 1758 173 3 3 chr3 99514140 99514441 -128010137 + AluJb SINE Alu 4 304 -8 396 258 8 67 chr3 99514441 99514498 -128010080 - MER81 DNA DNA -54 60 1 351 86 29 14 chr3 99515670 99515740 -128008838 + (TG)n Simple_repeat Simple_repeat 2 72 0 874 178 0 30 chr3 99515919 99516088 -128008490 + AluSg/x SINE Alu 149 312 0 2353 95 0 6 chr3 99516429 99516744 -128007834 + AluSq SINE Alu 1 313 0 558 340 5 16 chr3 99519191 99519385 -128005193 - MIR SINE MIR -70 192 1 21 36 0 0 chr3 99519516 99519544 -128005034 + AT_rich Low_complexity Low_complexity 1 28 0 220 314 29 29 chr3 99520773 99520878 -128003700 - MIR3 SINE MIR -14 194 90 22 0 0 0 chr3 99521148 99521170 -128003408 + AT_rich Low_complexity Low_complexity 1 22 0 2231 101 10 0 chr3 99522039 99522347 -128002231 - AluY SINE Alu 0 311 1 26 30 0 0 chr3 99522409 99522442 -128002136 + AT_rich Low_complexity Low_complexity 1 33 0 22 80 0 0 chr3 99522476 99522526 -128002052 + AT_rich Low_complexity Low_complexity 1 50 0 243 281 139 44 chr3 99522592 99522796 -128001782 - MIR SINE MIR 0 262 41 325 345 41 32 chr3 99523010 99523235 -128001343 - MIR SINE MIR -30 232 7 214 383 37 12 chr3 99523291 99523453 -128001125 - MIR SINE MIR -16 246 81 28 48 0 0 chr3 99524075 99524117 -128000461 + AT_rich Low_complexity Low_complexity 1 42 0 907 301 62 33 chr3 99525798 99526280 -127998298 - LTR33 LTR ERVL 0 521 26 2266 45 0 21 chr3 99526438 99526756 -127997822 - AluY SINE Alu 0 312 1 21 57 0 0 chr3 99527454 99527489 -127997089 + AT_rich Low_complexity Low_complexity 1 35 0 6109 143 32 22 chr3 99528912 99529727 -127994851 - L1MA3 LINE L1 0 6305 5468 2117 123 3 10 chr3 99529727 99530037 -127994541 - AluSg SINE Alu -2 308 1 6109 143 32 22 chr3 99530037 99530739 -127993839 - L1MA3 LINE L1 -837 5468 4774 23 54 0 0 chr3 99531260 99531297 -127993281 + AT_rich Low_complexity Low_complexity 1 37 0 412 74 0 0 chr3 99531502 99531556 -127993022 + MADE1 DNA Mariner 1 54 -26 320 148 0 0 chr3 99531602 99531656 -127992922 + MADE1 DNA Mariner 27 80 0 2104 99 3 56 chr3 99531806 99532129 -127992449 + AluSq SINE Alu 1 306 -7 263 291 87 70 chr3 99533161 99533333 -127991245 + MIR SINE MIR 82 256 -6 197 266 63 76 chr3 99533446 99533525 -127991053 - MER5A DNA MER1_type -94 95 18 253 326 22 11 chr3 99533525 99533617 -127990961 + MIR SINE MIR 15 107 -155 206 143 29 0 chr3 99533967 99534002 -127990576 + GA-rich Low_complexity Low_complexity 2 37 0 1335 119 5 0 chr3 99534014 99534208 -127990370 - AluSq SINE Alu -89 224 30 212 188 0 21 chr3 99535265 99535313 -127989265 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 853 241 45 99 chr3 99537722 99538295 -127986283 - MER34 LTR ERV1 0 542 1 1269 209 36 33 chr3 99538334 99538636 -127985942 + AluJo SINE Alu 1 303 -9 252 143 0 0 chr3 99539711 99539753 -127984825 + (T)n Simple_repeat Simple_repeat 1 42 0 268 282 28 42 chr3 99540487 99540629 -127983949 + Charlie7 DNA MER1_type 2468 2607 -5 186 43 0 0 chr3 99541252 99541275 -127983303 + (T)n Simple_repeat Simple_repeat 1 23 0 24 53 0 0 chr3 99541596 99541634 -127982944 + AT_rich Low_complexity Low_complexity 1 38 0 183 336 179 7 chr3 99542491 99542631 -127981947 - MIR SINE MIR -13 249 86 261 345 110 58 chr3 99543538 99544213 -127980365 - L2 LINE L2 -831 2483 1774 1982 124 0 3 chr3 99544264 99544585 -127979993 - AluSg SINE Alu 0 321 2 748 347 126 17 chr3 99548125 99548722 -127975856 + L3 LINE CR1 911 1572 -5 180 77 0 0 chr3 99550711 99550737 -127973841 - MER5C DNA MER1_type -298 26 1 * 480 269 50 8 chr3 99550737 99550846 -127973732 + MER5A DNA MER1_type 41 154 -35 268 280 40 40 chr3 99551580 99551680 -127972898 + MIR SINE MIR 160 259 -3 329 301 27 66 chr3 99551796 99551979 -127972599 + MER5A DNA MER1_type 14 189 0 23 33 0 0 chr3 99552355 99552385 -127972193 + AT_rich Low_complexity Low_complexity 1 30 0 234 156 0 0 chr3 99553244 99553289 -127971289 + (TATATG)n Simple_repeat Simple_repeat 2 46 0 2183 116 3 3 chr3 99553370 99553681 -127970897 - AluSp SINE Alu -2 311 1 1934 99 0 0 chr3 99553939 99554201 -127970377 + AluY SINE Alu 46 307 -4 23 0 0 0 chr3 99554243 99554266 -127970312 + AT_rich Low_complexity Low_complexity 1 23 0 2114 151 34 14 chr3 99554458 99554815 -127969763 + THE1B LTR MaLR 1 364 0 205 26 26 51 chr3 99555051 99555090 -127969488 + (TTTTA)n Simple_repeat Simple_repeat 4 41 0 1904 104 19 4 chr3 99555093 99555363 -127969215 - AluSx SINE Alu -38 274 1 308 278 136 12 chr3 99555711 99555934 -127968644 + L1 LINE L1 4214 4458 -1688 345 109 0 0 chr3 99556948 99557012 -127967566 + (TC)n Simple_repeat Simple_repeat 1 64 0 297 89 0 0 chr3 99557007 99557052 -127967526 + (CA)n Simple_repeat Simple_repeat 1 45 0 * 30 0 0 0 chr3 99557484 99557514 -127967064 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr3 99557598 99557630 -127966948 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr3 99558074 99558104 -127966474 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 99558208 99558236 -127966342 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 99562112 99562135 -127962443 + AT_rich Low_complexity Low_complexity 1 23 0 237 33 0 0 chr3 99562216 99562246 -127962332 + (TG)n Simple_repeat Simple_repeat 1 30 0 235 222 0 0 chr3 99563678 99563741 -127960837 + T-rich Low_complexity Low_complexity 1 63 0 26 30 0 0 chr3 99564182 99564215 -127960363 + AT_rich Low_complexity Low_complexity 1 33 0 1934 122 11 0 chr3 99565647 99565979 -127958599 + AluY SINE Alu 1 335 0 281 330 0 11 chr3 99566141 99566232 -127958346 + GA-rich Low_complexity Low_complexity 1 90 0 28 29 0 0 chr3 99566889 99566924 -127957654 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr3 99567055 99567094 -127957484 + AT_rich Low_complexity Low_complexity 1 39 0 21 71 0 0 chr3 99567655 99567697 -127956881 + AT_rich Low_complexity Low_complexity 1 42 0 340 269 0 67 chr3 99568398 99568517 -127956061 + L2 LINE L2 2687 2797 -517 1345 194 123 31 chr3 99568518 99568940 -127955638 - Charlie5 DNA MER1_type 0 2623 2163 382 238 82 8 chr3 99568912 99569034 -127955544 - Charlie5 DNA MER1_type -2481 131 1 * 1050 312 43 35 chr3 99569049 99569539 -127955039 + L2 LINE L2 2818 3311 -2 180 338 194 22 chr3 99569691 99569830 -127954748 + MIR3 SINE MIR 25 187 -21 489 332 104 5 chr3 99571019 99571230 -127953348 - MIR SINE MIR -26 236 5 334 0 43 0 chr3 99571240 99571286 -127953292 + (TG)n Simple_repeat Simple_repeat 1 48 0 2062 110 3 14 chr3 99571291 99571583 -127952995 - AluSx SINE Alu -23 289 1 1961 137 0 0 chr3 99571626 99571937 -127952641 + AluSx SINE Alu 1 311 0 23 54 0 0 chr3 99572502 99572539 -127952039 + AT_rich Low_complexity Low_complexity 1 37 0 183 80 0 0 chr3 99573608 99573633 -127950945 + (TTTC)n Simple_repeat Simple_repeat 3 27 0 22 56 0 0 chr3 99574025 99574061 -127950517 + AT_rich Low_complexity Low_complexity 1 36 0 190 306 28 14 chr3 99574207 99574279 -127950299 - L3 LINE CR1 -1093 484 412 23 33 0 0 chr3 99574630 99574660 -127949918 + AT_rich Low_complexity Low_complexity 1 30 0 29 28 0 0 chr3 99575741 99575777 -127948801 + AT_rich Low_complexity Low_complexity 1 36 0 277 270 61 74 chr3 99576914 99577062 -127947516 - MIR SINE MIR -56 206 61 216 161 74 0 chr3 99577998 99578079 -127946499 + (TATATG)n Simple_repeat Simple_repeat 6 92 0 1117 163 148 7 chr3 99579412 99579682 -127944896 + MER33 DNA MER1_type 3 310 -14 2399 187 34 21 chr3 99579880 99580467 -127944111 - L1MA7 LINE L1 -7 6284 5732 2014 129 10 0 chr3 99581446 99581741 -127942837 - AluSx SINE Alu -10 302 5 24 53 0 0 chr3 99584019 99584057 -127940521 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr3 99584178 99584199 -127940379 + AT_rich Low_complexity Low_complexity 1 21 0 2023 124 9 27 chr3 99585563 99585893 -127938685 + MER1B DNA MER1_type 16 339 0 23 0 0 0 chr3 99586459 99586482 -127938096 + AT_rich Low_complexity Low_complexity 1 23 0 251 336 0 55 chr3 99587373 99587483 -127937095 + L2 LINE L2 3169 3272 0 216 296 158 61 chr3 99587606 99587853 -127936725 + L2 LINE L2 2586 2856 -458 1747 87 139 23 chr3 99588175 99588441 -127936137 + AluSc SINE Alu 1 297 -12 21 82 0 0 chr3 99588543 99588592 -127935986 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr3 99589197 99589233 -127935345 + AT_rich Low_complexity Low_complexity 1 36 0 5357 36 0 0 chr3 99591935 99592577 -127932001 - L1PA4 LINE L1 0 6155 5514 335 329 71 29 chr3 99593301 99593441 -127931137 + MIR3 SINE MIR 38 183 -25 1222 194 8 13 chr3 99593580 99593817 -127930761 + MER8 DNA MER2_type 4 239 0 2225 113 0 0 chr3 99594406 99594706 -127929872 - AluSx SINE Alu -12 300 1 2025 128 0 0 chr3 99595910 99596218 -127928360 + AluSg SINE Alu 1 308 0 28 0 0 0 chr3 99596999 99597027 -127927551 + AT_rich Low_complexity Low_complexity 1 28 0 8958 32 1 20 chr3 99598953 99600078 -127924500 - L1PA3 LINE L1 -962 5184 4082 7265 37 2 0 chr3 99600073 99601059 -127923519 + L1PA3 LINE L1 5183 6170 0 * 207 360 12 0 chr3 99601437 99601523 -127923055 - L2 LINE L2 0 3272 3186 1762 179 20 83 chr3 99602276 99602488 -127922090 + L1MA1 LINE L1 5378 5602 -581 955 84 42 6 chr3 99602488 99602655 -127921923 + CT-rich Low_complexity Low_complexity 2 174 0 1690 141 4 11 chr3 99602655 99602925 -127921653 - AluSq SINE Alu -32 281 14 1762 179 20 83 chr3 99602925 99603157 -127921421 + L1MA1 LINE L1 5600 5795 -388 * 2381 186 94 0 chr3 99603137 99603636 -127920942 + L1MB3 LINE L1 5637 6182 -1 232 118 20 20 chr3 99604290 99604341 -127920237 + GA-rich Low_complexity Low_complexity 2 52 0 207 114 0 0 chr3 99605185 99605220 -127919358 + (GA)n Simple_repeat Simple_repeat 2 36 0 1962 113 69 6 chr3 99606413 99606733 -127917845 + L1MA1 LINE L1 5858 6197 -105 249 218 35 11 chr3 99607814 99607901 -127916677 + (TA)n Simple_repeat Simple_repeat 1 89 0 21 0 0 0 chr3 99608582 99608603 -127915975 + AT_rich Low_complexity Low_complexity 1 21 0 546 255 7 18 chr3 99609565 99609716 -127914862 + MIR SINE MIR 10 153 -62 319 342 11 24 chr3 99610435 99610575 -127914003 + MIR SINE MIR 1 141 -67 1946 128 7 0 chr3 99610980 99611298 -127913280 + AluSx SINE Alu 1 320 0 22 35 0 0 chr3 99611356 99611385 -127913193 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr3 99611558 99611595 -127912983 + AT_rich Low_complexity Low_complexity 1 37 0 1806 130 3 81 chr3 99611857 99612179 -127912399 + AluSx SINE Alu 9 305 -7 24 0 0 0 chr3 99612256 99612280 -127912298 + AT_rich Low_complexity Low_complexity 1 24 0 28 29 0 0 chr3 99613180 99613215 -127911363 + AT_rich Low_complexity Low_complexity 1 35 0 2420 112 31 8 chr3 99613271 99613627 -127910951 - THE1B LTR MaLR 0 364 1 2160 99 3 0 chr3 99613668 99613984 -127910594 - AluSp SINE Alu 0 317 1 997 137 55 33 chr3 99614066 99614249 -127910329 + AluJb SINE Alu 1 187 -125 3849 90 0 5 chr3 99614250 99614805 -127909773 - L1P LINE L1 -1311 4835 4284 6503 67 20 1 chr3 99614805 99615765 -127908813 + L1PA7 LINE L1 5175 6151 -3 214 270 0 0 chr3 99617545 99617608 -127906970 + (TA)n Simple_repeat Simple_repeat 2 64 0 228 200 0 0 chr3 99618616 99618666 -127905912 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 822 214 86 129 chr3 99618782 99619193 -127905385 - MER67D LTR ERV1 -4 510 142 266 227 91 0 chr3 99619193 99619259 -127905319 - MER47A DNA MER2_type 0 366 295 1387 181 38 42 chr3 99619262 99619550 -127905028 + AluJo SINE Alu 6 292 -20 1269 184 44 54 chr3 99619580 99619895 -127904683 - MER47A DNA MER2_type -54 312 1 784 158 41 0 chr3 99619895 99620036 -127904542 - MER67D LTR ERV1 -367 147 1 1517 171 34 14 chr3 99620305 99620598 -127903980 - AluJb SINE Alu -13 299 1 365 326 71 15 chr3 99621194 99621390 -127903188 - L2 LINE L2 -15 3298 3092 903 196 20 25 chr3 99622838 99623037 -127901541 - MER3 DNA MER1_type -10 199 2 230 269 21 86 chr3 99624527 99624620 -127899958 + MER5B DNA MER1_type 2 88 -90 2171 105 14 0 chr3 99625837 99626132 -127898446 + AluSq SINE Alu 2 300 -13 26 0 0 0 chr3 99627556 99627582 -127896996 + AT_rich Low_complexity Low_complexity 1 26 0 5485 113 82 111 chr3 99627776 99629366 -127895212 - pTR5 LTR ERV1 0 2438 738 27 62 0 0 chr3 99629721 99629769 -127894809 + AT_rich Low_complexity Low_complexity 1 48 0 21 57 0 0 chr3 99629988 99630023 -127894555 + AT_rich Low_complexity Low_complexity 1 35 0 207 0 0 0 chr3 99631271 99631294 -127893284 + (TG)n Simple_repeat Simple_repeat 2 24 0 382 296 89 0 chr3 99635490 99635659 -127888919 - MIR SINE MIR -34 228 45 991 254 12 24 chr3 99636110 99636362 -127888216 + MIR SINE MIR 8 256 -6 21 0 0 0 chr3 99636536 99636557 -127888021 + AT_rich Low_complexity Low_complexity 1 21 0 338 271 125 21 chr3 99636798 99636942 -127887636 - MLT1J1 LTR MaLR -39 407 249 392 113 127 0 chr3 99637034 99637105 -127887473 - MADE1 DNA Mariner 0 80 1 1453 205 32 21 chr3 99638138 99638421 -127886157 + AluJo SINE Alu 3 288 -24 969 293 106 16 chr3 99638653 99639174 -127885404 + L2 LINE L2 2594 3183 -130 282 116 0 0 chr3 99639174 99639217 -127885361 + (CA)n Simple_repeat Simple_repeat 2 44 0 969 293 106 16 chr3 99639217 99639265 -127885313 + L2 LINE L2 3183 3225 -88 2132 136 0 3 chr3 99639265 99639575 -127885003 + AluSx SINE Alu 2 310 -2 613 287 91 10 chr3 99640884 99641093 -127883485 + MIR SINE MIR 2 227 -35 2404 57 0 13 chr3 99641926 99642241 -127882337 + AluY SINE Alu 1 311 0 25 95 0 0 chr3 99642775 99642849 -127881729 + AT_rich Low_complexity Low_complexity 1 74 0 1980 158 90 34 chr3 99643517 99643928 -127880650 - Tigger2a DNA MER2_type 0 434 1 266 225 99 9 chr3 99643928 99644039 -127880539 - L1M4 LINE L1 -920 5226 5106 21 57 0 0 chr3 99644039 99644074 -127880504 + AT_rich Low_complexity Low_complexity 1 35 0 625 157 10 0 chr3 99644102 99644204 -127880374 + MSTD LTR MaLR 1 103 -325 * 821 172 13 13 chr3 99644198 99644355 -127880223 + MSTD LTR MaLR 240 396 0 2080 75 34 38 chr3 99644380 99644673 -127879905 + AluY SINE Alu 1 292 -19 1803 141 7 28 chr3 99645558 99645892 -127878686 + AluSg SINE Alu 1 328 0 652 261 43 5 chr3 99646582 99646766 -127877812 - MLT1A1 LTR MaLR 0 365 175 2376 57 3 35 chr3 99647611 99647927 -127876651 + AluY SINE Alu 1 306 -5 21942 45 0 12 chr3 99648007 99651576 -127873002 + L1PA3 LINE L1 1 3654 -2492 12092 31 1 1 chr3 99651576 99653790 -127870788 + L1PA3 LINE L1 3942 6190 0 35 0 0 0 chr3 99653790 99653825 -127870753 + AT_rich Low_complexity Low_complexity 1 35 0 2623 188 73 3 chr3 99654144 99654708 -127869870 - LTR26 LTR ERV1 0 603 1 219 211 0 35 chr3 99654945 99655002 -127869576 + (CATA)n Simple_repeat Simple_repeat 2 56 0 318 300 36 53 chr3 99655464 99655711 -127868867 - L1M4 LINE L1 -1388 4758 4516 1836 149 30 0 chr3 99656671 99656973 -127867605 + AluSq SINE Alu 1 311 -2 922 153 30 85 chr3 99658696 99658932 -127865646 - L1MB8 LINE L1 -11 6167 5945 219 139 0 0 chr3 99659885 99659921 -127864657 + (TG)n Simple_repeat Simple_repeat 2 37 0 225 350 12 12 chr3 99662500 99662580 -127861998 - MIR SINE MIR -180 82 3 183 80 0 0 chr3 99662835 99662860 -127861718 + (TA)n Simple_repeat Simple_repeat 2 26 0 1758 157 4 0 chr3 99662987 99663290 -127861288 - AluSx SINE Alu 0 304 1 1578 151 40 22 chr3 99663878 99664054 -127860524 - AluSq SINE Alu 0 311 126 344 22 0 22 chr3 99664054 99664100 -127860478 + (TTTTG)n Simple_repeat Simple_repeat 2 46 0 1578 151 40 22 chr3 99664100 99664229 -127860349 - AluSq SINE Alu -185 126 1 1682 146 8 0 chr3 99664429 99664696 -127859882 + AluSx SINE Alu 5 273 -39 1842 144 21 0 chr3 99665278 99665562 -127859016 - AluSx SINE Alu -16 296 7 186 352 28 56 chr3 99667110 99667252 -127857326 + MIR3 SINE MIR 23 160 -48 202 288 137 20 chr3 99667548 99667694 -127856884 - L2 LINE L2 -493 2821 2659 354 90 97 7 chr3 99667760 99667904 -127856674 + (TA)n Simple_repeat Simple_repeat 1 157 0 1304 99 0 0 chr3 99667933 99668105 -127856473 - AluY SINE Alu -15 296 125 767 311 111 3 chr3 99668878 99668933 -127855645 - L3 LINE CR1 -2 1575 1527 188 67 33 0 chr3 99668933 99668963 -127855615 + (CA)n Simple_repeat Simple_repeat 1 31 0 767 311 111 3 chr3 99668963 99669222 -127855356 - L3 LINE CR1 -50 1527 1227 246 156 0 0 chr3 99669434 99669479 -127855099 + (TA)n Simple_repeat Simple_repeat 1 45 0 3276 183 91 50 chr3 99669887 99670714 -127853864 + L1MB3 LINE L1 5321 6181 -2 1169 0 0 0 chr3 99670855 99670986 -127853592 - AluYa5/8 SINE Alu -3 307 177 22 35 0 0 chr3 99672283 99672312 -127852266 + AT_rich Low_complexity Low_complexity 1 29 0 308 281 110 72 chr3 99672392 99672684 -127851894 + L1MEc LINE L1 2093 2395 -4001 27 29 0 0 chr3 99673207 99673241 -127851337 + AT_rich Low_complexity Low_complexity 1 34 0 300 297 0 0 chr3 99674868 99674942 -127849636 - L2 LINE L2 -13 3300 3227 25 31 0 0 chr3 99675031 99675063 -127849515 + AT_rich Low_complexity Low_complexity 1 32 0 1870 162 0 0 chr3 99675170 99675473 -127849105 + AluJb SINE Alu 9 311 -1 29 60 0 0 chr3 99676738 99676788 -127847790 + AT_rich Low_complexity Low_complexity 1 50 0 43 35 0 0 chr3 99676873 99676930 -127847648 + AT_rich Low_complexity Low_complexity 1 57 0 319 207 37 0 chr3 99677022 99677104 -127847474 + L1MD3 LINE L1 7189 7273 -722 457 237 18 9 chr3 99677106 99677220 -127847358 + MLT1F1 LTR MaLR 2 116 -451 1064 202 157 30 chr3 99677221 99677552 -127847026 + L1MD3 LINE L1 7401 7773 -222 527 223 39 0 chr3 99677553 99677683 -127846895 + L1MD3 LINE L1 7852 7986 -9 188 340 124 32 chr3 99678973 99679255 -127845323 - L2 LINE L2 -1232 2082 1775 229 343 48 29 chr3 99679421 99679526 -127845052 - L2 LINE L2 -15 3298 3192 815 255 34 0 chr3 99681499 99681703 -127842875 - MER20 DNA MER1_type 0 219 9 296 302 137 0 chr3 99681952 99682091 -127842487 - MIR SINE MIR -28 234 77 372 285 0 28 chr3 99682781 99682925 -127841653 + MER104 DNA Tc2 29 168 -12 23 54 0 0 chr3 99682944 99682981 -127841597 + AT_rich Low_complexity Low_complexity 1 37 0 376 293 97 72 chr3 99683144 99683410 -127841168 + L1ME3A LINE L1 1863 2140 -4256 2117 118 0 3 chr3 99683410 99683707 -127840871 + AluSq SINE Alu 1 296 -17 376 293 97 72 chr3 99683707 99683761 -127840817 + L1ME3A LINE L1 2140 2191 -4205 783 282 57 58 chr3 99684381 99684670 -127839908 + L1ME3A LINE L1 5484 5778 -516 2146 155 87 20 chr3 99684670 99685071 -127839507 - MSTA LTR MaLR 0 428 1 783 282 57 58 chr3 99685071 99685272 -127839306 + L1ME3A LINE L1 5778 5978 -316 25 51 0 0 chr3 99685274 99685313 -127839265 + AT_rich Low_complexity Low_complexity 1 39 0 48 32 0 0 chr3 99685669 99685731 -127838847 + AT_rich Low_complexity Low_complexity 1 62 0 396 321 96 60 chr3 99686093 99686311 -127838267 + L2 LINE L2 3047 3272 0 22 56 0 0 chr3 99686440 99686476 -127838102 + AT_rich Low_complexity Low_complexity 1 36 0 230 214 14 14 chr3 99686665 99686735 -127837843 - L1MC/D LINE L1 -1883 5925 5856 585 212 102 0 chr3 99686737 99686855 -127837723 + FAM SINE Alu 12 141 -44 810 295 94 10 chr3 99686858 99687156 -127837422 - L1MC4a LINE L1 -1948 5860 5538 3090 192 30 13 chr3 99687539 99688237 -127836341 + MER67C LTR ERV1 1 710 0 22 0 0 0 chr3 99690324 99690346 -127834232 + AT_rich Low_complexity Low_complexity 1 22 0 2066 130 0 3 chr3 99690394 99690702 -127833876 - AluSc SINE Alu -2 307 1 1660 139 56 21 chr3 99691218 99691505 -127833073 - AluSx SINE Alu -15 297 1 222 156 0 0 chr3 99692497 99692542 -127832036 + (TCTA)n Simple_repeat Simple_repeat 4 48 0 225 219 0 0 chr3 99692578 99692651 -127831927 + (TATG)n Simple_repeat Simple_repeat 4 76 0 240 244 24 0 chr3 99692652 99692734 -127831844 + (TCTA)n Simple_repeat Simple_repeat 1 84 0 296 293 3 12 chr3 99692755 99692840 -127831738 - MIR3 SINE MIR -24 184 104 489 267 1 2 chr3 99693104 99693237 -127831341 - L1ME3A LINE L1 0 6164 6033 438 250 161 40 chr3 99693269 99693493 -127831085 - L1ME3A LINE L1 -236 5928 5678 25 31 0 0 chr3 99693706 99693738 -127830840 + AT_rich Low_complexity Low_complexity 1 32 0 227 148 74 0 chr3 99693779 99693833 -127830745 - LTR66 LTR ERVL -171 439 382 310 303 72 26 chr3 99694212 99694407 -127830171 + LTR33 LTR ERVL 304 507 -14 670 342 63 67 chr3 99695459 99696172 -127828406 + L2 LINE L2 2035 2744 -570 225 94 0 0 chr3 99696458 99696490 -127828088 + (TC)n Simple_repeat Simple_repeat 1 32 0 574 288 99 46 chr3 99698501 99699053 -127825525 + L1ME3A LINE L1 5317 5913 -257 22 0 0 0 chr3 99699801 99699823 -127824755 + AT_rich Low_complexity Low_complexity 1 22 0 591 40 0 0 chr3 99699914 99699989 -127824589 + L1PA5 LINE L1 6080 6154 0 1183 196 100 50 chr3 99700323 99700567 -127824011 - MLT1A1 LTR MaLR -5 360 130 1960 145 104 15 chr3 99700567 99700960 -127823618 + MSTA LTR MaLR 1 428 0 8643 157 15 38 chr3 99700962 99702577 -127822001 + MSTA-int LTR MaLR 3 1580 0 1880 170 96 10 chr3 99702577 99702971 -127821607 + MSTA LTR MaLR 1 428 0 1183 196 100 50 chr3 99702971 99703043 -127821535 - MLT1A1 LTR MaLR -234 131 24 198 64 21 64 chr3 99703345 99703392 -127821186 + (TTTTTG)n Simple_repeat Simple_repeat 3 47 0 225 350 43 34 chr3 99704130 99704247 -127820331 - L2 LINE L2 -4 3309 3192 711 301 47 8 chr3 99705301 99705557 -127819021 - ERVL LTR ERVL -1719 4045 3780 309 254 0 0 chr3 99705601 99705672 -127818906 + MER68 LTR ERV1 396 466 -96 244 281 91 25 chr3 99705679 99705800 -127818778 + L2 LINE L2 2638 2766 -548 13923 158 16 10 chr3 99705903 99706043 -127818535 - Tigger1 DNA MER2_type 0 2418 2280 1908 193 6 3 chr3 99706043 99706375 -127818203 - MER1B DNA MER1_type -1 336 4 13923 158 16 10 chr3 99706375 99708613 -127815965 - Tigger1 DNA MER2_type -138 2280 24 1723 157 15 0 chr3 99708671 99709013 -127815565 - AluJb SINE Alu 0 350 5 1317 179 25 113 chr3 99709114 99709526 -127815052 - MER67C LTR ERV1 -244 270 1 740 280 68 57 chr3 99709554 99709833 -127814745 + L2 LINE L2 2875 3156 -157 2396 120 25 6 chr3 99709927 99710284 -127814294 + THE1B LTR MaLR 1 364 0 236 313 50 10 chr3 99710318 99710417 -127814161 - MIR SINE MIR -95 167 65 239 338 0 0 chr3 99710593 99710673 -127813905 + L2 LINE L2 3193 3272 0 286 322 93 29 chr3 99711012 99711217 -127813361 + MLT1J2 LTR MaLR 223 440 -10 252 214 0 0 chr3 99712036 99712092 -127812486 + (CATA)n Simple_repeat Simple_repeat 1 56 0 1691 145 12 0 chr3 99712620 99712861 -127811717 + AluSx SINE Alu 35 278 -34 28 29 0 0 chr3 99713251 99713286 -127811292 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 99714562 99714585 -127809993 + AT_rich Low_complexity Low_complexity 1 23 0 779 266 67 45 chr3 99714709 99715436 -127809142 - L1MC4a LINE L1 -339 5823 5155 513 228 26 26 chr3 99715493 99715607 -127808971 + MLT1A2 LTR MaLR 1 114 -260 618 187 40 5 chr3 99715622 99715758 -127808820 - MLT1B LTR MaLR -4 370 259 3086 64 204 118 chr3 99715758 99716387 -127808191 + LTR12 LTR ERV1 13 695 -19 720 253 32 76 chr3 99716387 99716461 -127808117 - MLT1B LTR MaLR -83 307 231 2537 142 68 9 chr3 99716461 99716919 -127807659 + MER31A LTR ERV1 1 485 0 720 253 32 76 chr3 99716919 99717160 -127807418 - MLT1B LTR MaLR -159 231 6 264 100 0 0 chr3 99717217 99717257 -127807321 + (TC)n Simple_repeat Simple_repeat 2 41 0 706 238 44 17 chr3 99717290 99717471 -127807107 + MLT1A2 LTR MaLR 189 374 0 1991 149 36 28 chr3 99717696 99718052 -127806526 + THE1B LTR MaLR 1 359 -5 212 175 25 0 chr3 99718244 99718284 -127806294 - MER5A DNA MER1_type -86 103 63 399 314 96 19 chr3 99718426 99718697 -127805881 - L1MC4a LINE L1 -1595 4551 4260 525 281 21 47 chr3 99718990 99719182 -127805396 + Charlie1b DNA MER1_type 8 194 -329 589 200 68 47 chr3 99719259 99719449 -127805129 + Charlie1b DNA MER1_type 329 522 -1 297 319 32 0 chr3 99720117 99720274 -127804304 - L1MC4a LINE L1 -3568 2578 2417 1039 276 70 38 chr3 99720274 99720777 -127803801 - LTR40a LTR ERVL 0 519 1 1445 223 62 36 chr3 99721373 99721759 -127802819 + MSTD LTR MaLR 1 396 0 1641 191 30 15 chr3 99721777 99722113 -127802465 - MER2 DNA MER2_type 0 344 4 26 50 0 0 chr3 99722122 99722162 -127802416 + AT_rich Low_complexity Low_complexity 1 40 0 1305 276 80 49 chr3 99723237 99723812 -127800766 + MLT1E LTR MaLR 1 593 0 266 278 152 52 chr3 99725613 99725962 -127798616 - L1MC/D LINE L1 -2081 5727 5344 425 323 23 78 chr3 99725978 99726235 -127798343 - MLT1I LTR MaLR -13 396 154 300 170 74 7 chr3 99726560 99726695 -127797883 + (TA)n Simple_repeat Simple_repeat 1 144 0 195 139 0 0 chr3 99726826 99726862 -127797716 + (CA)n Simple_repeat Simple_repeat 2 37 0 2215 83 3 32 chr3 99726870 99727183 -127797395 + AluY SINE Alu 1 304 -7 29 0 0 0 chr3 99727818 99727847 -127796731 + AT_rich Low_complexity Low_complexity 1 29 0 1036 289 53 60 chr3 99728113 99728562 -127796016 + L1M4 LINE L1 11 456 -6403 1013 204 51 191 chr3 99728609 99729412 -127795166 + LTR8A LTR ERV1 30 720 -7 2576 250 96 46 chr3 99729440 99730704 -127793874 + L1M4 LINE L1 527 1841 -5014 2280 149 5 16 chr3 99730704 99731072 -127793506 + THE1B LTR MaLR 1 364 0 2576 250 96 46 chr3 99731072 99731154 -127793424 + L1M4 LINE L1 1841 1917 -4938 * 3718 247 49 35 chr3 99731150 99731874 -127792704 + L1M4 LINE L1 3714 4426 -2531 3078 50 0 0 chr3 99731874 99732257 -127792321 - L1PA4 LINE L1 -3 6152 5770 3718 247 49 35 chr3 99732257 99732404 -127792174 + L1M4 LINE L1 4426 4569 -2388 3663 110 21 107 chr3 99732404 99733131 -127791447 - MER4A LTR ERV1 0 664 1 3718 247 49 35 chr3 99733131 99733615 -127790963 + L1M4 LINE L1 4569 5094 -1863 2017 125 3 0 chr3 99733615 99733940 -127790638 + AluSx SINE Alu 1 326 0 3718 247 49 35 chr3 99733940 99733994 -127790584 + L1M4 LINE L1 5094 5146 -1811 1722 212 119 12 chr3 99733998 99734417 -127790161 + MLT2B1 LTR ERVL 1 464 -56 40902 65 3 3 chr3 99735256 99741386 -127783192 + L1PA5 LINE L1 15 6149 -5 1951 149 17 0 chr3 99741530 99741831 -127782747 - AluSx SINE Alu -4 308 3 216 0 0 0 chr3 99741847 99741871 -127782707 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 22 80 0 0 chr3 99742820 99742870 -127781708 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr3 99743025 99743048 -127781530 + AT_rich Low_complexity Low_complexity 1 23 0 303 224 0 0 chr3 99743107 99743183 -127781395 + (TATATG)n Simple_repeat Simple_repeat 2 77 0 289 313 50 10 chr3 99743579 99743678 -127780900 - MER5A DNA MER1_type -83 106 4 431 174 93 0 chr3 99744748 99744834 -127779744 - MIR SINE MIR -59 203 110 278 368 58 12 chr3 99744954 99745196 -127779382 - MERVL LTR ERVL -915 4570 4318 528 329 115 44 chr3 99745198 99745608 -127778970 - LTR16C LTR ERVL -6 485 47 26 64 0 0 chr3 99745728 99745775 -127778803 + AT_rich Low_complexity Low_complexity 1 47 0 392 289 72 82 chr3 99746140 99746517 -127778061 - MERVL LTR ERVL -1264 4221 3849 198 71 0 0 chr3 99747688 99747716 -127776862 + (T)n Simple_repeat Simple_repeat 1 28 0 304 376 13 19 chr3 99748451 99748608 -127775970 - MLT1K LTR MaLR -382 206 51 528 211 0 0 chr3 99748720 99748829 -127775749 - AluJb SINE Alu -1 311 203 1115 262 35 16 chr3 99749037 99749404 -127775174 - LTR55 LTR ERV -18 530 157 2013 132 27 0 chr3 99749742 99749917 -127774661 - AluSx SINE Alu -7 305 117 369 0 0 0 chr3 99749917 99749958 -127774620 + (TG)n Simple_repeat Simple_repeat 2 42 0 2013 132 27 0 chr3 99749958 99750078 -127774500 - AluSx SINE Alu -195 117 2 281 320 87 60 chr3 99750252 99750621 -127773957 + L2 LINE L2 2935 3313 0 3662 60 2 8 chr3 99750717 99751200 -127773378 + L1PA8 LINE L1 5693 6172 0 264 290 0 11 chr3 99751262 99751355 -127773223 - MIR SINE MIR -24 238 147 2215 121 0 0 chr3 99753476 99753774 -127770804 - AluSg SINE Alu -12 298 1 219 214 0 0 chr3 99753916 99753986 -127770592 + (TGAA)n Simple_repeat Simple_repeat 4 73 0 2105 120 7 3 chr3 99754097 99754405 -127770173 + AluY SINE Alu 3 311 0 7511 197 26 8 chr3 99754433 99755431 -127769147 - L1PA16 LINE L1 -10 6156 5177 2445 136 69 10 chr3 99755431 99755835 -127768743 - MSTA LTR MaLR 0 428 1 7511 197 26 8 chr3 99755835 99757464 -127767114 - L1PA16 LINE L1 -989 5177 3477 8845 177 13 8 chr3 99757480 99760155 -127764423 - L1PB1 LINE L1 -1 6150 3464 3122 219 20 1 chr3 99760154 99760915 -127763663 + L1PB1 LINE L1 2698 3472 -2674 * 4245 275 47 21 chr3 99760912 99762648 -127761930 - L1PB1 LINE L1 -2662 3484 1705 727 212 36 12 chr3 99762664 99762829 -127761749 - MSTB LTR MaLR 0 426 258 585 334 194 32 chr3 99763917 99764884 -127759694 - L2 LINE L2 -610 2704 1581 626 299 81 17 chr3 99765781 99766416 -127758162 + L1MEc LINE L1 2179 2830 -3385 5439 150 50 4 chr3 99766425 99767964 -127756614 - L1PA13 LINE L1 -6 6157 4538 285 287 147 14 chr3 99767968 99768396 -127756182 + L1MEc LINE L1 2819 3303 -2912 924 277 121 30 chr3 99768506 99769260 -127755318 + L1MEc LINE L1 3511 4353 -1862 270 277 21 11 chr3 99769339 99769433 -127755145 + L1MEc LINE L1 4552 4646 -1569 456 241 0 18 chr3 99769459 99769571 -127755007 - L1PB4 LINE L1 -12 6144 6035 255 230 310 0 chr3 99769899 99769986 -127754592 - L2 LINE L2 -9 3304 3191 1823 268 43 48 chr3 99771093 99771720 -127752858 - MLT1E3 LTR MaLR 0 624 1 238 29 0 29 chr3 99771797 99771832 -127752746 + MSTB LTR MaLR 1 34 -392 2006 206 34 24 chr3 99771833 99772246 -127752332 + MSTB LTR MaLR 10 426 0 588 172 26 46 chr3 99772910 99773047 -127751531 + L1MA5 LINE L1 6149 6284 -16 2225 117 31 14 chr3 99773047 99773399 -127751179 - THE1B LTR MaLR -4 360 3 588 172 26 46 chr3 99773399 99773412 -127751166 + L1MA5 LINE L1 6284 6296 -4 27 0 0 0 chr3 99773412 99773439 -127751139 + AT_rich Low_complexity Low_complexity 1 27 0 10161 202 34 60 chr3 99773439 99776430 -127748148 - L1MA3 LINE L1 -27 7697 4631 1187 247 7 7 chr3 99776430 99776717 -127747861 - AluJo SINE Alu -15 297 11 10161 202 34 60 chr3 99776717 99777355 -127747223 - L1MA3 LINE L1 -3093 4631 3978 5424 143 29 47 chr3 99777355 99778445 -127746133 - MER11C LTR ERVK 0 1071 1 10161 202 34 60 chr3 99778445 99778851 -127745727 - L1MA3 LINE L1 -3746 3978 3563 189 0 0 0 chr3 99778851 99778872 -127745706 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1862 148 0 10 chr3 99778874 99779164 -127745414 - AluSx SINE Alu -25 287 1 10161 202 34 60 chr3 99779164 99779501 -127745077 - L1MA3 LINE L1 -4162 3562 3270 211 145 65 0 chr3 99780682 99780744 -127743834 + (TTATA)n Simple_repeat Simple_repeat 1 66 0 443 270 62 10 chr3 99780893 99781123 -127743455 - LTR16A1 LTR ERVL 0 457 190 553 325 41 52 chr3 99781195 99781583 -127742995 - HERV16 LTR ERVL -1907 3857 3474 1579 333 66 22 chr3 99781736 99782692 -127741886 - HERV16 LTR ERVL -1905 3091 2256 1104 268 86 3 chr3 99782693 99783006 -127741572 - MER2 DNA MER2_type 0 345 7 391 317 0 0 chr3 99783056 99783157 -127741421 - HERV16 LTR ERVL -3429 2225 2125 1171 198 38 4 chr3 99783267 99783505 -127741073 - MLT1D LTR MaLR -2 503 258 829 334 39 34 chr3 99783646 99784209 -127740369 - HERV16 LTR ERVL -4428 568 3 667 332 43 36 chr3 99784211 99784657 -127739921 - LTR16A1 LTR ERVL 0 457 9 22 35 0 0 chr3 99785346 99785375 -127739203 + AT_rich Low_complexity Low_complexity 1 29 0 1271 232 77 44 chr3 99786115 99786330 -127738248 + MLT1B LTR MaLR 1 234 -156 360 0 0 0 chr3 99786330 99786370 -127738208 + (CA)n Simple_repeat Simple_repeat 2 41 0 1271 232 77 44 chr3 99786370 99786516 -127738062 + MLT1B LTR MaLR 234 374 -16 245 188 35 59 chr3 99787464 99787549 -127737029 - L1ME LINE L1 -271 5899 5817 3434 233 63 67 chr3 99787609 99788691 -127735887 - L1MB7 LINE L1 -40 6144 5059 1834 157 3 10 chr3 99788691 99788997 -127735581 - AluSx SINE Alu -8 304 1 3434 233 63 67 chr3 99788997 99789341 -127735237 - L1MB7 LINE L1 -1125 5059 4715 1464 188 0 26 chr3 99789341 99789607 -127734971 - AluJb SINE Alu -12 300 42 3434 233 63 67 chr3 99789607 99790838 -127733740 - L1MB7 LINE L1 -1469 4715 3502 21 0 0 0 chr3 99790863 99790884 -127733694 + AT_rich Low_complexity Low_complexity 1 21 0 332 309 98 45 chr3 99790940 99791282 -127733296 - L1MEd LINE L1 -4667 1977 1517 1376 284 135 11 chr3 99791334 99791873 -127732705 + MLT1E2 LTR MaLR 21 626 0 574 287 144 52 chr3 99791884 99792424 -127732154 - L1MEd LINE L1 -5042 1592 1003 180 0 0 0 chr3 99792783 99792803 -127731775 + (TTG)n Simple_repeat Simple_repeat 2 21 0 4090 40 0 4 chr3 99792803 99793304 -127731274 - L1PA5 LINE L1 -11 6143 5645 4764 181 43 13 chr3 99793452 99795242 -127729336 - L1MA4 LINE L1 -9 6473 4627 4215 221 43 34 chr3 99795240 99795552 -127729026 - L1MA4 LINE L1 -3323 3005 2698 * 1880 157 20 3 chr3 99795552 99795852 -127728726 - AluSx SINE Alu -5 307 3 4215 221 43 34 chr3 99795852 99795890 -127728688 - L1MA4 LINE L1 -3630 2698 2662 1790 107 38 15 chr3 99795890 99796153 -127728425 - AluY SINE Alu -13 298 30 4215 221 43 34 chr3 99796153 99797046 -127727532 - L1MA4 LINE L1 -3666 2662 1737 240 35 0 0 chr3 99797046 99797075 -127727503 + (TTA)n Simple_repeat Simple_repeat 2 30 0 4215 221 43 34 chr3 99797075 99797738 -127726840 - L1MA4 LINE L1 -4591 1737 1082 3456 220 28 85 chr3 99797745 99797940 -127726638 - L1MA4 LINE L1 -4423 905 700 232 163 0 0 chr3 99797940 99797989 -127726589 + LTR66 LTR ERVL 394 442 -168 647 88 33 0 chr3 99797990 99798081 -127726497 - L1PA7 LINE L1 -15 6139 6046 3456 220 28 85 chr3 99798081 99798214 -127726364 - L1MA4 LINE L1 -4628 700 561 1826 154 11 4 chr3 99798214 99798335 -127726243 + AluSx SINE Alu 1 120 -185 189 0 0 0 chr3 99798335 99798356 -127726222 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1826 154 11 4 chr3 99798356 99798537 -127726041 + AluSx SINE Alu 120 305 0 3456 220 28 85 chr3 99798537 99799102 -127725476 - L1MA4 LINE L1 -4767 561 14 527 229 17 185 chr3 99800392 99800567 -127724011 - MIR SINE MIR 0 262 154 2428 140 29 14 chr3 99800567 99801010 -127723568 - L1PA16 LINE L1 -9 6157 5708 527 229 17 185 chr3 99801010 99801126 -127723452 - MIR SINE MIR -108 154 20 2391 127 5 13 chr3 99801630 99802008 -127722570 - THE1C LTR MaLR 0 375 1 344 308 138 27 chr3 99802197 99802421 -127722157 + LTR16A1 LTR ERVL 209 457 0 363 116 42 42 chr3 99802471 99802566 -127722012 - L1PB2 LINE L1 -3 6148 6054 4322 159 38 12 chr3 99802567 99803997 -127720581 - L1PBb LINE L1 -4388 1816 348 25739 118 11 46 chr3 99804009 99810441 -127714137 - L1PA7 LINE L1 -7 6147 12 1618 188 32 23 chr3 99810452 99810797 -127713781 - L1PBb LINE L1 -5849 355 8 * 4481 187 47 28 chr3 99810768 99811824 -127712754 - L1PBa LINE L1 -5223 1640 565 2450 244 16 9 chr3 99811927 99812506 -127712072 - L1PBa LINE L1 -6278 585 3 213 65 0 0 chr3 99812512 99812543 -127712035 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 23 54 0 0 chr3 99812728 99812765 -127711813 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr3 99812881 99812918 -127711660 + AT_rich Low_complexity Low_complexity 1 37 0 23 54 0 0 chr3 99813034 99813071 -127711507 + AT_rich Low_complexity Low_complexity 1 37 0 632 250 28 28 chr3 99813147 99813291 -127711287 - FRAM SINE Alu -27 149 6 7052 176 103 78 chr3 99813649 99815362 -127709216 + MER52A LTR ERV1 1 1755 0 762 347 112 30 chr3 99815605 99816620 -127707958 - L2 LINE L2 -480 2834 1737 2130 105 40 0 chr3 99816653 99816949 -127707629 + AluY SINE Alu 4 311 0 366 263 18 53 chr3 99817400 99817514 -127707064 + MER69 DNA AcHobo 1 110 -1116 545 279 80 18 chr3 99819830 99820056 -127704522 + LTR16A1 LTR ERVL 212 451 -6 577 232 12 42 chr3 99820192 99820360 -127704218 - L1M4c LINE L1 -4732 1652 1490 2205 133 0 0 chr3 99820388 99820697 -127703881 + AluSg SINE Alu 1 309 -1 250 238 29 76 chr3 99821086 99821191 -127703387 + MLT1H LTR MaLR 431 530 -19 283 299 82 0 chr3 99821273 99821370 -127703208 + MER20 DNA MER1_type 5 109 -110 318 188 0 0 chr3 99821467 99821515 -127703063 + Alu SINE Alu 1 48 -254 333 0 0 0 chr3 99821596 99821633 -127702945 + (CA)n Simple_repeat Simple_repeat 2 38 0 216 0 0 0 chr3 99822169 99822193 -127702385 + (GA)n Simple_repeat Simple_repeat 1 24 0 266 73 24 0 chr3 99822195 99822236 -127702342 + (TG)n Simple_repeat Simple_repeat 2 43 0 216 162 0 0 chr3 99822676 99822713 -127701865 + (TG)n Simple_repeat Simple_repeat 2 38 0 1712 10 5 0 chr3 99823952 99824146 -127700432 - AluYb8 SINE Alu -3 315 121 27 29 0 0 chr3 99825191 99825225 -127699353 + AT_rich Low_complexity Low_complexity 1 34 0 1102 225 14 0 chr3 99825864 99826073 -127698505 + MER58A DNA MER1_type 13 224 0 2103 95 4 0 chr3 99826289 99826563 -127698015 + AluSx SINE Alu 19 293 -19 32 0 0 0 chr3 99826563 99826595 -127697983 + AT_rich Low_complexity Low_complexity 1 32 0 320 0 0 24 chr3 99828069 99828110 -127696468 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 2428 59 0 0 chr3 99828123 99828411 -127696167 - AluY SINE Alu -23 288 1 1505 177 0 4 chr3 99828975 99829229 -127695349 - AluSx SINE Alu -59 253 1 27 49 0 0 chr3 99831063 99831104 -127693474 + AT_rich Low_complexity Low_complexity 1 41 0 231 343 65 0 chr3 99833207 99833315 -127691263 - MIR SINE MIR -22 240 126 198 406 36 6 chr3 99834067 99834232 -127690346 + L2 LINE L2 2808 2977 -295 1244 183 51 8 chr3 99834571 99834806 -127689772 - MER21B LTR ERV1 -113 750 506 729 240 49 154 chr3 99835016 99835591 -127688987 - MLT1F1 LTR MaLR -46 547 4 383 329 31 6 chr3 99836738 99836899 -127687679 - MIR SINE MIR -10 252 88 225 0 0 0 chr3 99837306 99837331 -127687247 + (TG)n Simple_repeat Simple_repeat 2 26 0 315 164 0 0 chr3 99837918 99837979 -127686599 + (TA)n Simple_repeat Simple_repeat 1 61 0 335 335 46 71 chr3 99839178 99839753 -127684825 - L2 LINE L2 -1 3271 2707 513 189 56 0 chr3 99840288 99840378 -127684200 - AluJo SINE Alu -97 215 121 297 0 0 0 chr3 99840903 99840936 -127683642 + (CA)n Simple_repeat Simple_repeat 2 34 0 216 206 44 29 chr3 99842548 99842616 -127681962 - L2 LINE L2 -76 3237 3169 251 326 42 0 chr3 99842737 99842832 -127681746 - L2 LINE L2 -1 3271 3173 321 298 0 12 chr3 99842851 99842935 -127681643 - MIR SINE MIR -112 150 68 21 36 0 0 chr3 99843435 99843463 -127681115 + AT_rich Low_complexity Low_complexity 1 28 0 279 79 0 0 chr3 99844694 99844732 -127679846 + (TG)n Simple_repeat Simple_repeat 1 38 0 1610 211 65 6 chr3 99844854 99845209 -127679369 - MER21B LTR ERV1 -487 376 1 354 340 57 0 chr3 99845396 99845555 -127679023 - LTR33 LTR ERVL -315 206 39 249 379 0 10 chr3 99845694 99845797 -127678781 + L2 LINE L2 2407 2508 -806 193 292 21 0 chr3 99845792 99845840 -127678738 + MIR SINE MIR 7 55 -207 * 300 313 27 18 chr3 99845930 99846042 -127678536 - MER91A DNA MER1_type -82 114 2 453 301 66 27 chr3 99846044 99846227 -127678351 + MIR SINE MIR 57 246 -16 781 310 33 4 chr3 99847517 99847762 -127676816 - MIR SINE MIR -5 257 6 25 0 0 0 chr3 99850617 99850642 -127673936 + AT_rich Low_complexity Low_complexity 1 25 0 2142 130 3 0 chr3 99851697 99852004 -127672574 - AluSg SINE Alu -2 308 1 272 297 224 25 chr3 99852478 99852982 -127671596 - L3 LINE CR1 -285 1292 618 227 282 81 47 chr3 99853127 99853276 -127671302 - MIR SINE MIR -50 212 59 1831 157 3 3 chr3 99853549 99853863 -127670715 - AluSx SINE Alu 0 314 1 254 269 130 44 chr3 99853986 99854183 -127670395 - MIR SINE MIR -40 222 14 898 225 27 8 chr3 99855235 99855493 -127669085 + MER63 DNA MER1_type 792 1054 -8 250 318 0 0 chr3 99855584 99855647 -127668931 + MIR SINE MIR 181 243 -19 31 44 0 0 chr3 99855776 99855821 -127668757 + AT_rich Low_complexity Low_complexity 1 45 0 2122 196 13 3 chr3 99855878 99856270 -127668308 - MSTD LTR MaLR 0 396 1 620 265 188 56 chr3 99857887 99858264 -127666314 + L2 LINE L2 2887 3313 0 317 356 17 44 chr3 99858659 99858839 -127665739 - L2 LINE L2 -194 3078 2904 23 33 0 0 chr3 99858859 99858889 -127665689 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr3 99859000 99859029 -127665549 + AT_rich Low_complexity Low_complexity 1 29 0 202 209 0 0 chr3 99859728 99859771 -127664807 + T-rich Low_complexity Low_complexity 6 48 0 306 401 18 0 chr3 99861348 99861515 -127663063 - MIR3 SINE MIR -2 206 37 634 296 94 62 chr3 99862672 99863152 -127661426 - L2 LINE L2 -1 3312 2818 8022 156 56 19 chr3 99864086 99864702 -127659876 - Tigger1 DNA MER2_type 0 2418 1826 2294 90 3 0 chr3 99864702 99865001 -127659577 + AluSc SINE Alu 1 300 -9 8022 156 56 19 chr3 99865001 99866638 -127657940 - Tigger1 DNA MER2_type -592 1826 1 1655 174 13 30 chr3 99867920 99868224 -127656354 - AluJo SINE Alu -13 299 1 2679 42 0 0 chr3 99869197 99869508 -127655070 - AluY SINE Alu 0 311 1 31 82 0 0 chr3 99869665 99869738 -127654840 + AT_rich Low_complexity Low_complexity 1 73 0 339 25 0 0 chr3 99869952 99869992 -127654586 + (TG)n Simple_repeat Simple_repeat 1 40 0 404 289 109 6 chr3 99872175 99872331 -127652247 - MIR SINE MIR -10 252 81 17810 179 56 34 chr3 99872996 99873440 -127651138 - L1 LINE L1 -2110 5455 5022 1694 179 7 3 chr3 99873440 99873737 -127650841 - AluJb SINE Alu -9 303 6 17810 179 56 34 chr3 99873737 99875698 -127648880 - L1 LINE L1 -2543 5022 3106 753 10 19 19 chr3 99875698 99875801 -127648777 + (TTTC)n Simple_repeat Simple_repeat 2 104 0 1781 154 0 7 chr3 99875803 99876082 -127648496 - AluSx SINE Alu -33 279 3 17810 179 56 34 chr3 99876082 99878290 -127646288 - L1 LINE L1 -4459 3106 704 458 113 0 0 chr3 99878290 99878361 -127646217 - L1PA13 LINE L1 -11 6152 6082 17810 179 56 34 chr3 99878361 99879069 -127645509 - L1 LINE L1 -6861 704 13 298 197 57 0 chr3 99879150 99879292 -127645286 + (TA)n Simple_repeat Simple_repeat 1 150 0 22 35 0 0 chr3 99880124 99880153 -127644425 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 99880903 99880926 -127643652 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 99881052 99881075 -127643503 + AT_rich Low_complexity Low_complexity 1 23 0 214 346 0 19 chr3 99881319 99881426 -127643152 - MIR3 SINE MIR -2 206 102 2079 106 0 3 chr3 99881430 99881714 -127642864 + AluSc SINE Alu 14 296 -13 213 39 0 0 chr3 99883068 99883094 -127641484 + (TTG)n Simple_repeat Simple_repeat 2 27 0 797 362 89 19 chr3 99883482 99884012 -127640566 + L3 LINE CR1 1009 1575 -2 275 254 0 0 chr3 99884092 99884163 -127640415 - MER116 DNA Mariner -1 79 9 24 0 0 0 chr3 99884304 99884328 -127640250 + AT_rich Low_complexity Low_complexity 1 24 0 352 327 39 13 chr3 99884641 99884797 -127639781 + MIR3 SINE MIR 36 195 -13 648 338 35 40 chr3 99885158 99885534 -127639044 + LTR16B LTR ERVL 89 462 -2 277 292 95 44 chr3 99885539 99885676 -127638902 + MIR SINE MIR 103 246 -16 565 160 72 8 chr3 99886366 99886491 -127638087 - MER65A LTR ERV1 -6 439 307 27660 100 9 6 chr3 99886505 99888961 -127635617 - L1PA7 LINE L1 0 6469 3991 246 32 0 0 chr3 99888961 99888992 -127635586 + (TTG)n Simple_repeat Simple_repeat 3 33 0 27660 100 9 6 chr3 99888992 99891331 -127633247 - L1PA7 LINE L1 -2478 3991 1660 5274 140 22 42 chr3 99891328 99892488 -127632090 - L1PA7 LINE L1 -5101 1360 327 * 1034 174 153 52 chr3 99892497 99892784 -127631794 - MER65A LTR ERV1 -125 320 5 1494 191 18 40 chr3 99893775 99894104 -127630474 - MLT1B LTR MaLR -8 382 61 2095 132 3 10 chr3 99894603 99894914 -127629664 - AluSq SINE Alu -4 309 1 279 0 0 0 chr3 99895034 99895065 -127629513 + (TTA)n Simple_repeat Simple_repeat 2 32 0 4454 209 49 8 chr3 99895371 99896459 -127628119 + L1MC2 LINE L1 5196 6333 -11 774 271 52 36 chr3 99896860 99897111 -127627467 - MIR SINE MIR -5 257 3 354 318 156 34 chr3 99897214 99897393 -127627185 + MIR SINE MIR 1 201 -61 243 61 0 0 chr3 99897920 99897953 -127626625 + (TC)n Simple_repeat Simple_repeat 1 33 0 229 224 0 0 chr3 99899132 99899181 -127625397 + (TA)n Simple_repeat Simple_repeat 1 49 0 221 286 14 14 chr3 99899833 99899903 -127624675 + L2 LINE L2 3201 3270 -2 309 319 38 31 chr3 99899925 99900085 -127624493 - MIR SINE MIR -89 173 13 39 74 0 0 chr3 99900408 99900489 -127624089 + AT_rich Low_complexity Low_complexity 1 81 0 21 82 0 0 chr3 99901045 99901094 -127623484 + AT_rich Low_complexity Low_complexity 1 49 0 24 77 0 0 chr3 99902528 99902580 -127621998 + AT_rich Low_complexity Low_complexity 1 52 0 34 55 0 0 chr3 99902646 99902701 -127621877 + AT_rich Low_complexity Low_complexity 1 55 0 26 30 0 0 chr3 99903232 99903265 -127621313 + AT_rich Low_complexity Low_complexity 1 33 0 641 178 20 40 chr3 99903740 99903892 -127620686 - L1MA6 LINE L1 -4 6296 6148 223 151 0 38 chr3 99904595 99904648 -127619930 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 21 0 0 0 chr3 99904965 99904986 -127619592 + AT_rich Low_complexity Low_complexity 1 21 0 24 77 0 0 chr3 99906792 99906844 -127617734 + AT_rich Low_complexity Low_complexity 1 52 0 2298 44 4 0 chr3 99908150 99908422 -127616156 + AluY SINE Alu 21 293 -18 27 0 0 0 chr3 99908423 99908450 -127616128 + AT_rich Low_complexity Low_complexity 1 27 0 208 388 53 29 chr3 99908681 99908887 -127615691 - MIR SINE MIR -29 233 23 2835 35 0 0 chr3 99909003 99909371 -127615207 + L1PA5 LINE L1 5800 6167 0 2334 286 96 39 chr3 99911115 99912193 -127612385 - L2 LINE L2 -796 2518 1380 221 384 106 31 chr3 99912309 99912668 -127611910 - L2 LINE L2 -69 3203 2818 25 31 0 0 chr3 99913122 99913154 -127611424 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chr3 99913356 99913389 -127611189 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr3 99914739 99914760 -127609818 + AT_rich Low_complexity Low_complexity 1 21 0 206 292 77 0 chr3 99914797 99914901 -127609677 - MIR SINE MIR -11 197 74 387 0 0 0 chr3 99916310 99916353 -127608225 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 71 0 0 chr3 99917080 99917122 -127607456 + AT_rich Low_complexity Low_complexity 1 42 0 27 73 0 0 chr3 99917235 99917290 -127607288 + AT_rich Low_complexity Low_complexity 1 55 0 290 258 60 12 chr3 99917315 99917419 -127607159 - L1ME LINE L1 -600 5566 5456 * 984 183 72 25 chr3 99917417 99917696 -127606882 - L1 LINE L1 -784 5362 5071 1209 270 16 33 chr3 99917819 99918243 -127606335 - L1M2 LINE L1 -4280 1691 1283 315 310 166 28 chr3 99918639 99918929 -127605649 + L1ME4a LINE L1 5543 5872 -249 29 78 0 0 chr3 99919668 99919732 -127604846 + AT_rich Low_complexity Low_complexity 1 64 0 1674 173 6 31 chr3 99919843 99920161 -127604417 - AluSx SINE Alu 0 312 3 1253 140 0 0 chr3 99920423 99920637 -127603941 + L1MA4A LINE L1 6085 6298 -5 27 0 0 0 chr3 99920748 99920775 -127603803 + AT_rich Low_complexity Low_complexity 1 27 0 180 111 0 0 chr3 99921834 99921861 -127602717 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 1323 282 133 68 chr3 99921862 99922969 -127601609 - L2 LINE L2 -7 3306 2128 47 61 0 0 chr3 99923348 99923430 -127601148 + AT_rich Low_complexity Low_complexity 1 82 0 22 0 0 0 chr3 99924618 99924640 -127599938 + AT_rich Low_complexity Low_complexity 1 22 0 2223 46 3 3 chr3 99925417 99925699 -127598879 + L1PA4 LINE L1 5871 6152 -3 346 275 84 8 chr3 99925708 99925839 -127598739 + MIR SINE MIR 57 197 -65 29 47 0 0 chr3 99926072 99926115 -127598463 + AT_rich Low_complexity Low_complexity 1 43 0 217 291 18 0 chr3 99926581 99926636 -127597942 - L2 LINE L2 -15 3298 3243 208 275 22 88 chr3 99926723 99926814 -127597764 - MIR SINE MIR -93 115 31 26 0 0 0 chr3 99927289 99927315 -127597263 + AT_rich Low_complexity Low_complexity 1 26 0 369 296 131 11 chr3 99927346 99927522 -127597056 - MIR SINE MIR 0 262 66 41894 40 24 1 chr3 99927523 99933533 -127591045 + L1PA2 LINE L1 4 6155 0 325 320 55 39 chr3 99935346 99935527 -127589051 + L2 LINE L2 3123 3306 -7 23 54 0 0 chr3 99936653 99936690 -127587888 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr3 99942878 99942903 -127581675 + AT_rich Low_complexity Low_complexity 1 25 0 232 364 146 0 chr3 99944247 99944357 -127580221 + MER91A DNA MER1_type 60 185 -11 416 261 131 22 chr3 99944404 99944626 -127579952 - L1ME3 LINE L1 -1 6161 5916 287 236 14 0 chr3 99944727 99944799 -127579779 + (TA)n Simple_repeat Simple_repeat 1 73 0 23 0 0 0 chr3 99945858 99945881 -127578697 + AT_rich Low_complexity Low_complexity 1 23 0 279 0 0 0 chr3 99945903 99945934 -127578644 + (CA)n Simple_repeat Simple_repeat 2 32 0 738 295 34 17 chr3 99946935 99947169 -127577409 + MIR SINE MIR 25 262 0 22 0 0 0 chr3 99948935 99948957 -127575621 + AT_rich Low_complexity Low_complexity 1 22 0 2355 42 7 10 chr3 99948957 99949268 -127575310 - AluY SINE Alu 0 310 1 35 83 0 0 chr3 99949832 99949916 -127574662 + AT_rich Low_complexity Low_complexity 1 84 0 2137 92 7 0 chr3 99951485 99951780 -127572798 - AluY SINE Alu -14 297 1 27 0 0 0 chr3 99951969 99951996 -127572582 + AT_rich Low_complexity Low_complexity 1 27 0 743 274 66 17 chr3 99952495 99952736 -127571842 - MLT1C LTR MaLR 0 467 215 542 206 9 9 chr3 99952736 99952843 -127571735 - FAM SINE Alu -41 144 38 647 264 42 0 chr3 99952847 99953014 -127571564 - MLT1C LTR MaLR -284 183 10 183 200 0 0 chr3 99953742 99953777 -127570801 + MIR SINE MIR 105 139 -69 23 0 0 0 chr3 99953843 99953866 -127570712 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 99954229 99954250 -127570328 + AT_rich Low_complexity Low_complexity 1 21 0 320 337 77 31 chr3 99954376 99954637 -127569941 + L1MEd LINE L1 66 338 -5781 1106 239 111 57 chr3 99955032 99955401 -127569177 - MSTD LTR MaLR -7 389 1 1030 140 12 0 chr3 99955628 99955792 -127568786 + AluJb SINE Alu 147 312 0 426 287 52 69 chr3 99955816 99956182 -127568396 + L1MEd LINE L1 1042 1398 -4731 210 305 53 14 chr3 99956747 99956815 -127567763 - MIR SINE MIR 0 262 198 4158 144 36 4 chr3 99956815 99957532 -127567046 + L1PA13 LINE L1 5419 6158 -5 210 305 53 14 chr3 99957532 99957603 -127566975 - MIR SINE MIR -64 198 118 859 219 48 5 chr3 99957681 99957868 -127566710 + MER20 DNA MER1_type 25 219 0 288 53 0 0 chr3 99958672 99958710 -127565868 + (TA)n Simple_repeat Simple_repeat 2 39 0 1718 159 0 41 chr3 99958749 99959039 -127565539 - AluSx SINE Alu -30 282 5 24 53 0 0 chr3 99960226 99960264 -127564314 + AT_rich Low_complexity Low_complexity 1 38 0 373 344 60 48 chr3 99960678 99960992 -127563586 + L2 LINE L2 1776 2093 -1221 224 297 40 69 chr3 99961074 99961175 -127563403 + L2 LINE L2 2276 2373 -941 196 415 31 0 chr3 99961304 99961434 -127563144 + L2 LINE L2 2597 2730 -584 286 344 101 21 chr3 99962692 99962881 -127561697 + MIR SINE MIR 53 256 -6 1889 100 79 4 chr3 99962988 99963267 -127561311 + AluSg SINE Alu 1 300 -10 268 316 140 7 chr3 99963369 99963505 -127561073 - L2 LINE L2 -7 3306 3153 23 0 0 0 chr3 99964504 99964527 -127560051 + AT_rich Low_complexity Low_complexity 1 23 0 183 162 0 0 chr3 99964597 99964634 -127559944 + T-rich Low_complexity Low_complexity 1 37 0 1896 151 7 0 chr3 99964797 99965114 -127559464 - AluSx SINE Alu 0 320 2 473 0 18 0 chr3 99965114 99965171 -127559407 + (CA)n Simple_repeat Simple_repeat 1 58 0 186 143 0 0 chr3 99965176 99965211 -127559367 + (TA)n Simple_repeat Simple_repeat 2 36 0 1041 209 104 72 chr3 99966440 99966814 -127557764 + MLT1B LTR MaLR 3 388 -2 1883 115 29 51 chr3 99966822 99966939 -127557639 + AluSg SINE Alu 4 122 -188 369 43 0 0 chr3 99966939 99966986 -127557592 + (CA)n Simple_repeat Simple_repeat 2 48 0 1883 115 29 51 chr3 99966986 99967182 -127557396 + AluSg SINE Alu 122 310 0 298 347 8 16 chr3 99967762 99967883 -127556695 + MIR3 SINE MIR 70 189 -19 1349 212 7 24 chr3 99968241 99968533 -127556045 + AluJo SINE Alu 1 287 -25 2998 197 58 41 chr3 99968562 99969409 -127555169 - L1MA4 LINE L1 -8 6292 5432 21 0 0 0 chr3 99969459 99969480 -127555098 + AT_rich Low_complexity Low_complexity 1 21 0 232 217 0 0 chr3 99969553 99969599 -127554979 + L1ME LINE L1 5579 5624 -540 206 146 0 24 chr3 99970748 99970789 -127553789 + (TGAA)n Simple_repeat Simple_repeat 4 43 0 1126 136 0 10 chr3 99972992 99973190 -127551388 - L1MA6 LINE L1 -1 6299 6104 30 27 0 0 chr3 99974426 99974463 -127550115 + AT_rich Low_complexity Low_complexity 1 37 0 525 76 51 0 chr3 99974506 99974624 -127549954 + (TA)n Simple_repeat Simple_repeat 2 125 0 220 378 33 22 chr3 99976220 99976310 -127548268 - MIR3 SINE MIR -109 99 9 242 227 0 76 chr3 99976648 99976714 -127547864 + MIR SINE MIR 92 152 -110 254 265 0 15 chr3 99977074 99977142 -127547436 + T-rich Low_complexity Low_complexity 4 70 0 27 49 0 0 chr3 99977469 99977510 -127547068 + AT_rich Low_complexity Low_complexity 1 41 0 259 212 24 0 chr3 99978017 99978102 -127546476 + (TA)n Simple_repeat Simple_repeat 1 87 0 23 33 0 0 chr3 99978344 99978374 -127546204 + AT_rich Low_complexity Low_complexity 1 30 0 605 82 0 31 chr3 99979186 99979284 -127545294 + L1PA8 LINE L1 6076 6170 -2 2540 64 9 7 chr3 99979480 99979862 -127544716 + L1P LINE L1 5040 5423 -731 37 81 0 0 chr3 99979951 99980037 -127544541 + AT_rich Low_complexity Low_complexity 1 86 0 210 355 40 46 chr3 99982660 99982812 -127541766 + MER5A DNA MER1_type 36 186 -3 21 36 0 0 chr3 99983480 99983508 -127541070 + AT_rich Low_complexity Low_complexity 1 28 0 898 182 6 6 chr3 99983890 99984060 -127540518 + AluSg SINE Alu 1 170 -140 1675 152 4 11 chr3 99984324 99984594 -127539984 + AluSx SINE Alu 44 311 -1 912 136 0 0 chr3 99984831 99984993 -127539585 + (TA)n Simple_repeat Simple_repeat 2 163 0 937 179 0 0 chr3 99984993 99985144 -127539434 - AluSg/x SINE Alu -23 289 139 1692 113 0 12 chr3 99985148 99985396 -127539182 - AluY SINE Alu -12 299 55 884 225 20 51 chr3 99985553 99985806 -127538772 - MLT2D LTR ERVL -169 245 1 2179 45 8 0 chr3 99986668 99986957 -127537621 + AluY SINE Alu 39 329 0 2076 145 111 3 chr3 99987189 99987575 -127537003 - MSTA LTR MaLR 0 428 1 1139 118 0 0 chr3 99987642 99987803 -127536775 - AluSg/x SINE Alu -19 293 133 1956 95 4 22 chr3 99988596 99988912 -127535666 + AluY SINE Alu 14 324 0 1927 136 14 0 chr3 99989538 99989832 -127534746 + AluSx SINE Alu 14 311 -1 245 95 0 24 chr3 99989848 99989890 -127534688 + (TAAAAA)n Simple_repeat Simple_repeat 2 42 0 2261 236 46 25 chr3 99989895 99990572 -127534006 + L1MC4 LINE L1 7352 8042 0 1654 169 4 0 chr3 99991474 99991741 -127532837 + AluSx SINE Alu 44 311 -1 23 0 0 0 chr3 99991936 99991959 -127532619 + AT_rich Low_complexity Low_complexity 1 23 0 1826 164 0 0 chr3 99992082 99992380 -127532198 + AluJb SINE Alu 1 298 -14 180 314 78 49 chr3 99993144 99993246 -127531332 + L2 LINE L2 3137 3241 -31 183 147 0 0 chr3 99993390 99993424 -127531154 - L2 LINE L2 0 3313 3280 335 283 54 0 chr3 99994151 99994243 -127530335 - MLT1L LTR MaLR -221 394 298 216 0 0 0 chr3 99995685 99995709 -127528869 + (TG)n Simple_repeat Simple_repeat 2 25 0 418 240 96 41 chr3 99997766 99997912 -127526666 + MIR SINE MIR 84 237 -25 21 0 0 0 chr3 99999044 99999065 -127525513 + AT_rich Low_complexity Low_complexity 1 21 0 1971 107 4 4 chr3 99999681 100000009 -127524569 + AluY SINE Alu 1 328 0 27 29 0 0 chr3 100000365 100000399 -127524179 + AT_rich Low_complexity Low_complexity 1 34 0 1467 189 27 51 chr3 100002643 100002704 -127521874 + MER6 DNA MER2_type 1 62 -803 2623 10 0 0 chr3 100002704 100002994 -127521584 + AluYa5 SINE Alu 20 309 -2 1467 189 27 51 chr3 100002994 100003265 -127521313 + MER6 DNA MER2_type 62 325 -540 1296 254 62 5 chr3 100004056 100004461 -127520117 - MER110A LTR ERV1 -1 467 40 1872 31 0 0 chr3 100008642 100008866 -127515712 + L1PA4 LINE L1 5924 6147 -8 225 0 0 0 chr3 100008976 100009001 -127515577 + (GA)n Simple_repeat Simple_repeat 2 26 0 2140 205 54 104 chr3 100009042 100009802 -127514776 - MER72 LTR ERV1 0 722 1 371 259 24 0 chr3 100009893 100009978 -127514600 - L2 LINE L2 0 3313 3227 266 343 86 77 chr3 100010385 100010712 -127513866 - L2 LINE L2 -4 3268 2939 278 316 120 15 chr3 100010785 100010918 -127513660 - L2 LINE L2 -474 2840 2694 26 0 0 0 chr3 100011379 100011405 -127513173 + AT_rich Low_complexity Low_complexity 1 26 0 186 313 125 23 chr3 100011810 100011938 -127512640 - MIR SINE MIR -4 258 118 250 280 27 13 chr3 100012488 100012563 -127512015 + MIR3 SINE MIR 122 197 -11 272 286 168 43 chr3 100012594 100012755 -127511823 - MER5A DNA MER1_type 0 189 9 21 0 0 0 chr3 100012912 100012933 -127511645 + AT_rich Low_complexity Low_complexity 1 21 0 1411 185 54 0 chr3 100012940 100013238 -127511340 + L1MC2 LINE L1 6022 6335 -9 2425 53 0 10 chr3 100013951 100014251 -127510327 + AluY SINE Alu 1 297 -14 650 264 0 31 chr3 100014595 100014788 -127509790 - MER5A DNA MER1_type 0 189 3 2257 77 14 0 chr3 100017067 100017354 -127507224 - AluY SINE Alu -20 291 1 2018 213 128 66 chr3 100017473 100018212 -127506366 - LTR1B LTR ERV1 0 785 1 426 251 117 53 chr3 100018240 100018411 -127506167 - MLT1L LTR MaLR -409 206 25 31 88 0 0 chr3 100019075 100019155 -127505423 + AT_rich Low_complexity Low_complexity 1 80 0 1479 154 13 7 chr3 100020137 100020436 -127504142 - L1MA5 LINE L1 0 6300 6000 1810 109 5 136 chr3 100020462 100020858 -127503720 - LTR14B LTR ERVK 0 608 1 1481 201 34 0 chr3 100020909 100021207 -127503371 - AluJo SINE Alu -2 310 3 30 59 0 0 chr3 100021216 100021267 -127503311 + AT_rich Low_complexity Low_complexity 1 51 0 1515 95 5 0 chr3 100021267 100021488 -127503090 - L1MA1 LINE L1 -3 6299 6078 491 214 0 0 chr3 100021673 100021762 -127502816 - AluY SINE Alu -27 284 196 393 22 0 0 chr3 100021938 100021984 -127502594 + (TA)n Simple_repeat Simple_repeat 1 46 0 253 89 78 11 chr3 100023090 100023180 -127501398 + (TA)n Simple_repeat Simple_repeat 2 97 0 217 49 0 49 chr3 100023204 100023245 -127501333 + (TA)n Simple_repeat Simple_repeat 1 39 0 282 128 64 23 chr3 100023300 100023472 -127501106 + (TA)n Simple_repeat Simple_repeat 2 180 0 270 0 0 0 chr3 100025086 100025116 -127499462 + (TA)n Simple_repeat Simple_repeat 2 31 0 382 372 102 27 chr3 100025873 100026276 -127498302 + L2 LINE L2 2235 2667 -647 903 196 186 61 chr3 100026571 100026898 -127497680 - MER93b LTR ERV1 -5 368 1 2315 53 0 0 chr3 100029050 100029359 -127495219 - AluY SINE Alu 0 309 1 366 23 0 0 chr3 100030316 100030359 -127494219 + (CAA)n Simple_repeat Simple_repeat 3 45 0 234 62 0 0 chr3 100030631 100030663 -127493915 + (T)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr3 100032212 100032233 -127492345 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr3 100032554 100032591 -127491987 + AT_rich Low_complexity Low_complexity 1 37 0 233 378 51 0 chr3 100032941 100033039 -127491539 + L2 LINE L2 3170 3272 0 183 80 0 0 chr3 100033258 100033283 -127491295 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 225 0 0 0 chr3 100033282 100033307 -127491271 + (TG)n Simple_repeat Simple_repeat 2 26 0 243 222 0 0 chr3 100033946 100034027 -127490551 + (TA)n Simple_repeat Simple_repeat 2 82 0 400 152 38 76 chr3 100034719 100034798 -127489780 + Tigger3b DNA MER2_type 1 76 -1155 1204 168 0 9 chr3 100034799 100035013 -127489565 + AluSx SINE Alu 1 212 -100 258 73 49 0 chr3 100035013 100035054 -127489524 + AluSp SINE Alu 78 120 -183 1243 133 0 0 chr3 100035483 100035708 -127488870 + AluSq SINE Alu 105 329 0 814 184 0 12 chr3 100035726 100035889 -127488689 + FRAM SINE Alu 5 165 -1 5944 176 14 21 chr3 100035900 100037070 -127487508 + Tigger3b DNA MER2_type 70 1231 0 279 175 0 0 chr3 100037070 100037127 -127487451 + (TG)n Simple_repeat Simple_repeat 2 58 0 230 64 43 0 chr3 100037127 100037174 -127487404 - LTR66 LTR ERVL -171 439 391 * 982 207 30 20 chr3 100037162 100037360 -127487218 - MER8 DNA MER2_type -39 200 1 375 182 0 0 chr3 100037786 100037863 -127486715 + (TA)n Simple_repeat Simple_repeat 2 78 0 24 67 0 0 chr3 100038094 100038139 -127486439 + AT_rich Low_complexity Low_complexity 1 45 0 238 404 89 14 chr3 100038255 100038401 -127486177 - L2 LINE L2 -5 3267 3111 415 284 77 16 chr3 100038412 100038606 -127485972 + MER58C DNA MER1_type 10 215 0 780 181 0 0 chr3 100039043 100039176 -127485402 + FRAM SINE Alu 20 152 -24 299 292 25 10 chr3 100039251 100039367 -127485211 + GA-rich Low_complexity Low_complexity 1 201 0 242 338 52 22 chr3 100039566 100039639 -127484939 + MIR SINE MIR 123 192 -70 1611 204 35 9 chr3 100039639 100039977 -127484601 + MER7A DNA MER2_type 2 346 0 242 338 52 22 chr3 100039977 100040039 -127484539 + MIR SINE MIR 192 262 0 211 225 157 45 chr3 100040025 100040114 -127484464 + MIR SINE MIR 75 173 -89 * 186 382 0 22 chr3 100041093 100041182 -127483396 + L3b LINE CR1 1491 1577 -6 207 161 0 0 chr3 100042000 100042031 -127482547 + (TG)n Simple_repeat Simple_repeat 2 32 0 258 274 16 0 chr3 100042621 100042683 -127481895 + L2 LINE L2 3201 3263 -9 32 57 0 0 chr3 100042834 100042887 -127481691 + AT_rich Low_complexity Low_complexity 1 53 0 286 338 0 0 chr3 100043085 100043165 -127481413 - L2 LINE L2 0 3313 3234 186 43 0 0 chr3 100043661 100043684 -127480894 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 6693 67 3 14 chr3 100043684 100044767 -127479811 - L1PA7 LINE L1 -11 6143 5061 3425 84 24 0 chr3 100044767 100045232 -127479346 - L1PA7 LINE L1 -1686 4460 3985 22 56 0 0 chr3 100045250 100045286 -127479292 + AT_rich Low_complexity Low_complexity 1 36 0 5423 158 21 14 chr3 100045332 100046297 -127478281 - L1MC1 LINE L1 -1 6332 5361 26 0 0 0 chr3 100046325 100046351 -127478227 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 100046657 100046678 -127477900 + AT_rich Low_complexity Low_complexity 1 21 0 1772 175 0 46 chr3 100047315 100047640 -127476938 - AluJo SINE Alu -2 310 1 2021 128 10 0 chr3 100047808 100048105 -127476473 - AluSq SINE Alu -13 300 1 223 284 69 10 chr3 100048987 100049089 -127475489 + MIR3 SINE MIR 95 202 -6 1564 163 80 0 chr3 100049365 100049641 -127474937 + AluSx SINE Alu 13 310 -2 24 32 0 0 chr3 100049695 100049726 -127474852 + AT_rich Low_complexity Low_complexity 1 31 0 31 58 0 0 chr3 100049992 100050044 -127474534 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr3 100051182 100051205 -127473373 + AT_rich Low_complexity Low_complexity 1 23 0 402 57 0 0 chr3 100051231 100051284 -127473294 + (TA)n Simple_repeat Simple_repeat 1 53 0 1729 322 152 18 chr3 100052045 100053087 -127471491 + L2 LINE L2 1718 2979 -334 255 31 0 0 chr3 100053087 100053119 -127471459 + (CA)n Simple_repeat Simple_repeat 2 33 0 1729 322 152 18 chr3 100053119 100053462 -127471116 + L2 LINE L2 2979 3275 -38 347 415 18 9 chr3 100053693 100053910 -127470668 - MIR SINE MIR -42 220 2 24 0 0 0 chr3 100054115 100054139 -127470439 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 100054927 100054948 -127469630 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 100055204 100055226 -127469352 + AT_rich Low_complexity Low_complexity 1 22 0 2206 112 3 0 chr3 100055240 100055552 -127469026 - AluSp SINE Alu 0 313 1 362 92 0 15 chr3 100055642 100055707 -127468871 + (TA)n Simple_repeat Simple_repeat 2 65 0 2375 62 0 7 chr3 100056700 100057006 -127467572 + AluY SINE Alu 1 304 -7 21 0 0 0 chr3 100057397 100057418 -127467160 + AT_rich Low_complexity Low_complexity 1 21 0 1976 116 0 0 chr3 100057419 100057740 -127466838 + AluY SINE Alu 1 321 0 260 386 42 32 chr3 100058381 100058570 -127466008 - MIR3 SINE MIR -15 193 3 23 54 0 0 chr3 100059141 100059178 -127465400 + AT_rich Low_complexity Low_complexity 1 37 0 26 74 0 0 chr3 100059222 100059276 -127465302 + AT_rich Low_complexity Low_complexity 1 54 0 184 273 34 45 chr3 100060242 100060330 -127464248 + L2 LINE L2 3186 3272 0 23 33 0 0 chr3 100061134 100061164 -127463414 + AT_rich Low_complexity Low_complexity 1 30 0 180 0 0 0 chr3 100061212 100061232 -127463346 + (CAA)n Simple_repeat Simple_repeat 2 21 0 247 286 0 0 chr3 100061546 100061623 -127462955 + (CA)n Simple_repeat Simple_repeat 1 77 0 1834 108 89 0 chr3 100062723 100062992 -127461586 + AluSx SINE Alu 1 293 -19 262 200 0 0 chr3 100063119 100063164 -127461414 - LTR33 LTR ERVL -134 387 343 298 330 88 16 chr3 100063355 100063537 -127461041 - L2 LINE L2 -3 3310 3116 24 53 0 0 chr3 100065273 100065311 -127459267 + AT_rich Low_complexity Low_complexity 1 38 0 2450 132 3 3 chr3 100065633 100065997 -127458581 - THE1B LTR MaLR 0 364 1 8701 133 55 35 chr3 100065997 100067547 -127457031 - THE1B-int LTR MaLR 0 1580 1 2339 141 6 3 chr3 100067547 100067910 -127456668 - THE1B LTR MaLR 0 364 1 193 204 20 41 chr3 100068010 100068059 -127456519 - L2 LINE L2 -2 3311 3264 243 336 57 16 chr3 100068158 100068280 -127456298 - MIR SINE MIR -102 160 34 407 296 44 0 chr3 100068939 100069074 -127455504 - MIR SINE MIR -2 260 120 398 288 0 51 chr3 100071487 100071605 -127452973 + L2 LINE L2 3198 3309 -4 1166 144 0 0 chr3 100071684 100071864 -127452714 + L1PB1 LINE L1 5968 6147 -4 27 0 0 0 chr3 100071865 100071892 -127452686 + AT_rich Low_complexity Low_complexity 1 27 0 28 61 0 0 chr3 100073479 100073528 -127451050 + AT_rich Low_complexity Low_complexity 1 49 0 303 108 20 39 chr3 100074407 100074509 -127450069 + (TA)n Simple_repeat Simple_repeat 1 100 0 21 0 0 0 chr3 100074571 100074592 -127449986 + AT_rich Low_complexity Low_complexity 1 21 0 2401 143 20 49 chr3 100075880 100076327 -127448251 + MER57B LTR ERV1 1 434 0 414 57 0 0 chr3 100076487 100076540 -127448038 + (TA)n Simple_repeat Simple_repeat 2 54 0 21 82 0 0 chr3 100076654 100076703 -127447875 + AT_rich Low_complexity Low_complexity 1 49 0 377 320 86 29 chr3 100076710 100077185 -127447393 - L1ME3 LINE L1 -230 5940 5428 1913 134 16 7 chr3 100077287 100077594 -127446984 - AluSq SINE Alu 0 313 4 240 122 0 0 chr3 100077655 100077696 -127446882 + (TG)n Simple_repeat Simple_repeat 2 42 0 207 114 0 0 chr3 100077898 100077933 -127446645 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1791 153 4 0 chr3 100077935 100078216 -127446362 - AluSx SINE Alu -28 284 3 321 350 38 27 chr3 100079546 100079729 -127444849 + MIR SINE MIR 53 237 -25 1133 162 16 0 chr3 100081053 100081238 -127443340 - AluJb SINE Alu -53 259 72 247 214 18 0 chr3 100081481 100081537 -127443041 + (TATG)n Simple_repeat Simple_repeat 4 60 0 537 304 89 5 chr3 100083427 100083641 -127440937 + LTR16B LTR ERVL 230 461 -3 26 30 0 0 chr3 100085359 100085392 -127439186 + AT_rich Low_complexity Low_complexity 1 33 0 458 239 68 0 chr3 100085414 100085531 -127439047 - L3 LINE CR1 -250 1327 1203 272 307 50 10 chr3 100085786 100085887 -127438691 - L3 LINE CR1 -678 899 795 183 80 0 0 chr3 100086073 100086098 -127438480 + (A)n Simple_repeat Simple_repeat 1 25 0 21 57 0 0 chr3 100086768 100086803 -127437775 + AT_rich Low_complexity Low_complexity 1 35 0 1621 48 53 0 chr3 100086871 100087078 -127437500 - AluY SINE Alu -93 218 1 21 57 0 0 chr3 100087131 100087166 -127437412 + AT_rich Low_complexity Low_complexity 1 35 0 1094 181 4 55 chr3 100088073 100088310 -127436268 + AluJb SINE Alu 88 312 0 80 79 0 0 chr3 100088871 100089049 -127435529 + AT_rich Low_complexity Low_complexity 1 178 0 21 71 0 0 chr3 100089438 100089480 -127435098 + AT_rich Low_complexity Low_complexity 1 42 0 3600 196 62 21 chr3 100089642 100090890 -127433688 + L1MB4 LINE L1 4882 6180 0 15402 48 30 0 chr3 100090991 100093751 -127430827 - L1PA5 LINE L1 -2 6152 3332 21 71 0 0 chr3 100095285 100095327 -127429251 + AT_rich Low_complexity Low_complexity 1 42 0 259 315 178 15 chr3 100098284 100098481 -127426097 - MIR SINE MIR -13 249 21 565 85 11 32 chr3 100098684 100098778 -127425800 - L1PA11 LINE L1 0 6174 6083 212 0 36 0 chr3 100098900 100098928 -127425650 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 299 381 128 33 chr3 100099577 100099902 -127424676 + L2 LINE L2 2343 2636 -678 1493 198 3 20 chr3 100099902 100100200 -127424378 + AluJb SINE Alu 5 297 -15 299 381 128 33 chr3 100100200 100100423 -127424155 + L2 LINE L2 2636 2943 -371 1088 191 33 118 chr3 100100684 100101014 -127423564 + AluJo SINE Alu 1 302 0 22 0 0 0 chr3 100101045 100101067 -127423511 + AT_rich Low_complexity Low_complexity 1 22 0 337 410 21 13 chr3 100102459 100102698 -127421880 - L2 LINE L2 -479 2835 2595 496 290 25 0 chr3 100104595 100104757 -127419821 + MER63A DNA MER1_type 9 174 -36 1531 189 34 7 chr3 100104823 100105114 -127419464 - AluSx SINE Alu -13 299 1 844 282 77 53 chr3 100105735 100106153 -127418425 - LTR16C LTR ERVL -61 430 3 209 346 50 0 chr3 100106771 100106872 -127417706 + L2 LINE L2 3192 3297 -16 444 306 50 68 chr3 100108140 100108421 -127416157 - MLT1J2 LTR MaLR -98 352 77 360 43 0 0 chr3 100108688 100108734 -127415844 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 26 0 0 0 chr3 100109120 100109146 -127415432 + AT_rich Low_complexity Low_complexity 1 26 0 30 59 0 0 chr3 100109268 100109319 -127415259 + AT_rich Low_complexity Low_complexity 1 51 0 180 158 0 0 chr3 100109379 100109417 -127415161 + (CA)n Simple_repeat Simple_repeat 1 38 0 194 277 64 112 chr3 100109703 100109891 -127414687 - MIR SINE MIR -43 219 41 264 337 25 49 chr3 100110856 100111019 -127413559 + MIR SINE MIR 33 191 -71 28 0 0 0 chr3 100111065 100111093 -127413485 + AT_rich Low_complexity Low_complexity 1 28 0 1344 193 57 82 chr3 100111102 100111565 -127413013 - MLT2D LTR ERVL 0 464 5 243 345 27 0 chr3 100111707 100111817 -127412761 + MIR SINE MIR 150 262 0 21 57 0 0 chr3 100113412 100113447 -127411131 + AT_rich Low_complexity Low_complexity 1 35 0 279 0 0 0 chr3 100113899 100113930 -127410648 + (CA)n Simple_repeat Simple_repeat 2 32 0 288 53 0 0 chr3 100114245 100114283 -127410295 + (CA)n Simple_repeat Simple_repeat 2 39 0 191 229 42 21 chr3 100114535 100114583 -127409995 - L2 LINE L2 -94 3219 3171 23 54 0 0 chr3 100115030 100115067 -127409511 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr3 100115369 100115399 -127409179 + AT_rich Low_complexity Low_complexity 1 30 0 234 0 0 0 chr3 100115935 100115961 -127408617 + (TTTTA)n Simple_repeat Simple_repeat 5 30 0 1039 186 41 41 chr3 100115964 100116206 -127408372 - AluJo SINE Alu -30 282 41 361 356 31 40 chr3 100116361 100116583 -127407995 - MIR SINE MIR -18 244 25 21 57 0 0 chr3 100117307 100117342 -127407236 + AT_rich Low_complexity Low_complexity 1 35 0 511 210 72 84 chr3 100117343 100117605 -127406973 + MIR SINE MIR 1 259 -3 212 136 45 0 chr3 100118206 100118250 -127406328 + (TA)n Simple_repeat Simple_repeat 2 47 0 33 80 0 0 chr3 100119815 100119890 -127404688 + AT_rich Low_complexity Low_complexity 1 75 0 538 168 175 0 chr3 100120123 100120266 -127404312 - L1MB4 LINE L1 -2 6178 6011 222 232 0 18 chr3 100120374 100120430 -127404148 + (TATATG)n Simple_repeat Simple_repeat 2 56 0 24 53 0 0 chr3 100120639 100120677 -127403901 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr3 100123932 100123957 -127400621 + AT_rich Low_complexity Low_complexity 1 25 0 896 196 5 76 chr3 100124232 100124456 -127400122 + AluJo SINE Alu 1 208 -104 549 133 0 0 chr3 100124478 100124576 -127400002 + (GGA)n Simple_repeat Simple_repeat 3 100 0 435 83 0 0 chr3 100124634 100124694 -127399884 + (TG)n Simple_repeat Simple_repeat 1 60 0 2055 105 4 0 chr3 100125430 100125738 -127398840 - AluSc SINE Alu 0 309 1 986 25 0 0 chr3 100126458 100126576 -127398002 + L1PA2 LINE L1 6038 6155 0 180 0 0 0 chr3 100126667 100126687 -127397891 + (GA)n Simple_repeat Simple_repeat 1 20 0 245 73 0 24 chr3 100126716 100126757 -127397821 + (GA)n Simple_repeat Simple_repeat 1 40 0 358 362 43 0 chr3 100127039 100127202 -127397376 - MIR SINE MIR -56 206 37 913 200 12 6 chr3 100127339 100127509 -127397069 + FRAM SINE Alu 1 164 -12 2208 68 14 3 chr3 100128579 100128872 -127395706 + AluY SINE Alu 1 296 -15 1960 137 13 0 chr3 100129219 100129519 -127395059 + AluSx SINE Alu 1 304 -8 24 0 0 0 chr3 100130046 100130070 -127394508 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 100131609 100131637 -127392941 + AT_rich Low_complexity Low_complexity 1 28 0 1302 201 113 9 chr3 100132538 100132857 -127391721 - MSTB LTR MaLR -74 352 1 5083 141 14 40 chr3 100132953 100133769 -127390809 - L1PA16 LINE L1 -5 6161 5366 1831 114 11 19 chr3 100133769 100134040 -127390538 - AluSc SINE Alu -25 284 16 5083 141 14 40 chr3 100134040 100134193 -127390385 - L1PA16 LINE L1 -800 5366 5211 444 290 8 0 chr3 100134192 100134323 -127390255 - L1 LINE L1 -3793 2353 2222 * 392 104 15 0 chr3 100134723 100134790 -127389788 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 180 77 0 0 chr3 100134811 100134837 -127389741 + (TA)n Simple_repeat Simple_repeat 1 26 0 2018 211 15 47 chr3 100134839 100135308 -127389270 - MER82 DNA MER2_type 0 653 200 904 265 0 0 chr3 100135577 100135781 -127388797 - MER82 DNA MER2_type -449 204 1 55 80 0 0 chr3 100136424 100136549 -127388029 + AT_rich Low_complexity Low_complexity 1 125 0 531 259 29 6 chr3 100137242 100137412 -127387166 + MER104 DNA Tc2 4 177 -3 2200 102 0 0 chr3 100137447 100137741 -127386837 - AluY SINE Alu -17 294 1 23 0 0 0 chr3 100137965 100137988 -127386590 + AT_rich Low_complexity Low_complexity 1 23 0 194 175 25 0 chr3 100138393 100138433 -127386145 + L2 LINE L2 3273 3313 0 212 270 24 24 chr3 100138542 100138668 -127385910 + (CATATA)n Simple_repeat Simple_repeat 4 129 0 183 156 0 0 chr3 100139399 100139431 -127385147 + A-rich Low_complexity Low_complexity 1 32 0 2250 92 14 5 chr3 100140926 100141266 -127383312 - pTR5 LTR ERV1 -78 702 66 253 292 10 0 chr3 100141266 100141362 -127383216 - LTR30 LTR ERV1 -80 642 546 3005 147 48 31 chr3 100141362 100142159 -127382419 - pTR5 LTR ERV1 -412 2026 741 318 307 34 67 chr3 100142376 100142555 -127382023 + MER5B DNA MER1_type 6 178 0 726 168 0 8 chr3 100143480 100143605 -127380973 - FLAM_A SINE Alu -7 135 12 2156 118 0 16 chr3 100144100 100144406 -127380172 - AluSx SINE Alu -11 301 1 346 232 20 50 chr3 100144950 100145049 -127379529 - MIR3 SINE MIR -18 190 95 312 27 0 0 chr3 100145745 100145782 -127378796 + (TG)n Simple_repeat Simple_repeat 2 38 0 23 33 0 0 chr3 100147467 100147497 -127377081 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 100147683 100147704 -127376874 + AT_rich Low_complexity Low_complexity 1 21 0 2430 151 42 22 chr3 100148921 100149378 -127375200 - L1PA16 LINE L1 -5 6161 5696 186 118 0 0 chr3 100152323 100152357 -127372221 + (TTTG)n Simple_repeat Simple_repeat 3 36 0 1725 87 3 113 chr3 100152362 100152528 -127372050 - AluSg SINE Alu -33 277 159 198 0 0 0 chr3 100152528 100152550 -127372028 + (TA)n Simple_repeat Simple_repeat 2 23 0 1725 87 3 113 chr3 100152550 100152694 -127371884 - AluSg SINE Alu -151 159 1 21 0 0 0 chr3 100153299 100153320 -127371258 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr3 100153363 100153388 -127371190 + (TAGG)n Simple_repeat Simple_repeat 3 27 0 22 0 0 0 chr3 100153682 100153704 -127370874 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr3 100153780 100153809 -127370769 + AT_rich Low_complexity Low_complexity 1 29 0 601 233 145 4 chr3 100154896 100154924 -127369654 - MLT1D-int LTR MaLR -973 398 375 1603 176 56 0 chr3 100154924 100155208 -127369370 - AluSx SINE Alu -12 300 1 601 233 145 4 chr3 100155208 100155417 -127369161 - MLT1D-int LTR MaLR -996 375 9 1232 268 96 25 chr3 100155417 100155857 -127368721 - MLT1D LTR MaLR -33 472 2 231 71 0 0 chr3 100155859 100155887 -127368691 - MLT1E3 LTR MaLR -596 28 1 25 31 0 0 chr3 100157216 100157248 -127367330 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr3 100157308 100157336 -127367242 + AT_rich Low_complexity Low_complexity 1 28 0 201 313 0 82 chr3 100157395 100157529 -127367049 - MIR SINE MIR -18 244 122 21 57 0 0 chr3 100157633 100157668 -127366910 + AT_rich Low_complexity Low_complexity 1 35 0 205 305 73 0 chr3 100158651 100158733 -127365845 - MIR SINE MIR -116 146 59 22 0 0 0 chr3 100160351 100160373 -127364205 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 100160875 100160903 -127363675 + AT_rich Low_complexity Low_complexity 1 28 0 1351 281 91 32 chr3 100161054 100161887 -127362691 - L1MEc LINE L1 -2905 3310 2385 1321 97 0 10 chr3 100161891 100162087 -127362491 + L1PA7 LINE L1 5960 6153 -1 1218 240 13 6 chr3 100162090 100162402 -127362176 - L1MC3 LINE L1 -6 7779 7466 1240 236 55 42 chr3 100162430 100162956 -127361622 - L1MEc LINE L1 -4014 2382 1850 568 333 69 0 chr3 100162987 100163218 -127361360 - L1MEc LINE L1 -6101 295 49 243 372 83 0 chr3 100163430 100163586 -127360992 + MIR SINE MIR 20 188 -74 275 335 173 20 chr3 100163675 100163872 -127360706 - MIR SINE MIR -19 243 17 453 344 12 12 chr3 100165053 100165213 -127359365 + MIR SINE MIR 5 164 -98 309 306 30 22 chr3 100165669 100165803 -127358775 - MIR SINE MIR -55 207 73 330 379 100 41 chr3 100166432 100166666 -127357912 + L2 LINE L2 2924 3183 -89 1652 166 25 97 chr3 100166666 100167001 -127357577 + THE1C LTR MaLR 1 304 -71 2547 46 3 0 chr3 100167001 100167307 -127357271 - AluY SINE Alu -4 307 1 1652 166 25 97 chr3 100167307 100167375 -127357203 + THE1C LTR MaLR 304 375 0 330 379 100 41 chr3 100167375 100167459 -127357119 + L2 LINE L2 3183 3261 -11 423 0 0 0 chr3 100167546 100167593 -127356985 + (CA)n Simple_repeat Simple_repeat 2 48 0 2343 78 0 0 chr3 100168576 100168885 -127355693 + AluY SINE Alu 3 311 0 3648 97 17 0 chr3 100169317 100169843 -127354735 + L1PA13 LINE L1 5621 6155 -8 21 0 0 0 chr3 100170802 100170823 -127353755 + AT_rich Low_complexity Low_complexity 1 21 0 425 218 190 39 chr3 100170950 100171129 -127353449 - MER3 DNA MER1_type -2 207 2 969 243 33 0 chr3 100171143 100171353 -127353225 + MER58A DNA MER1_type 6 222 -2 22 0 0 0 chr3 100173486 100173508 -127351070 + AT_rich Low_complexity Low_complexity 1 22 0 234 62 0 0 chr3 100174172 100174204 -127350374 + (TG)n Simple_repeat Simple_repeat 1 32 0 21 36 0 0 chr3 100176222 100176250 -127348328 + AT_rich Low_complexity Low_complexity 1 28 0 505 274 20 89 chr3 100176361 100176653 -127347925 - L2 LINE L2 -803 2511 2240 1408 196 75 32 chr3 100177390 100177762 -127346816 - MLT1B LTR MaLR 0 390 3 28 29 0 0 chr3 100177765 100177800 -127346778 + AT_rich Low_complexity Low_complexity 1 35 0 197 237 26 20 chr3 100177826 100177978 -127346600 + (TA)n Simple_repeat Simple_repeat 2 154 0 392 71 71 0 chr3 100178382 100178481 -127346097 + (TA)n Simple_repeat Simple_repeat 1 106 0 258 211 75 25 chr3 100178615 100178776 -127345802 + (GTTTG)n Simple_repeat Simple_repeat 2 170 0 230 0 33 0 chr3 100180354 100180384 -127344194 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1900 127 25 0 chr3 100180387 100180544 -127344034 - AluSx SINE Alu -21 291 122 333 0 0 0 chr3 100180544 100180581 -127343997 + (TG)n Simple_repeat Simple_repeat 2 38 0 1900 127 25 0 chr3 100180581 100180707 -127343871 - AluSx SINE Alu -190 122 1 931 211 72 23 chr3 100180719 100181055 -127343523 - MSTD LTR MaLR -2 394 2 2326 68 3 0 chr3 100181420 100181728 -127342850 + AluY SINE Alu 1 309 -2 202 111 0 44 chr3 100181971 100182016 -127342562 + (GGAA)n Simple_repeat Simple_repeat 3 45 0 442 363 44 16 chr3 100182403 100182654 -127341924 - MIR SINE MIR 0 262 5 24 32 0 0 chr3 100183691 100183722 -127340856 + AT_rich Low_complexity Low_complexity 1 31 0 22 80 0 0 chr3 100184217 100184267 -127340311 + AT_rich Low_complexity Low_complexity 1 50 0 463 330 42 16 chr3 100185156 100185347 -127339231 + MIR SINE MIR 47 242 -20 1810 129 14 29 chr3 100186745 100187047 -127337531 - AluSx SINE Alu 0 306 9 490 274 121 5 chr3 100187119 100187309 -127337269 - MIR SINE MIR -30 232 21 567 260 57 6 chr3 100187500 100187677 -127336901 + MER5A DNA MER1_type 4 189 0 1516 204 7 0 chr3 100188080 100188404 -127336174 - AluJb SINE Alu 0 326 1 24 0 0 0 chr3 100189064 100189088 -127335490 + AT_rich Low_complexity Low_complexity 1 24 0 384 366 33 0 chr3 100189234 100189387 -127335191 - MIR3 SINE MIR -6 202 45 2385 73 0 6 chr3 100189489 100189802 -127334776 - AluY SINE Alu 0 311 1 2023 123 0 3 chr3 100189806 100190099 -127334479 - AluY SINE Alu -19 292 1 24 0 0 0 chr3 100190105 100190129 -127334449 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr3 100190163 100190188 -127334390 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3 100190220 100190243 -127334335 + AT_rich Low_complexity Low_complexity 1 23 0 189 333 157 20 chr3 100190372 100190525 -127334053 - MIR SINE MIR -15 247 74 361 309 8 24 chr3 100190719 100190845 -127333733 - MER5A DNA MER1_type -2 187 64 1724 119 0 125 chr3 100191167 100191552 -127333026 - MER1B DNA MER1_type 0 337 1 1254 172 46 108 chr3 100191813 100192138 -127332440 - AluJo SINE Alu -7 305 1 2208 176 16 28 chr3 100193117 100193554 -127331024 - Tigger2a DNA MER2_type -1 433 2 227 284 0 0 chr3 100194337 100194404 -127330174 + (TA)n Simple_repeat Simple_repeat 2 68 0 28 29 0 0 chr3 100194650 100194685 -127329893 + AT_rich Low_complexity Low_complexity 1 35 0 180 97 0 0 chr3 100195217 100195248 -127329330 + (TG)n Simple_repeat Simple_repeat 2 32 0 21 57 0 0 chr3 100195339 100195374 -127329204 + AT_rich Low_complexity Low_complexity 1 35 0 297 0 0 0 chr3 100196777 100196810 -127327768 + (CA)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr3 100196971 100196993 -127327585 + AT_rich Low_complexity Low_complexity 1 22 0 259 256 11 78 chr3 100198129 100198219 -127326359 + L2 LINE L2 3228 3311 -2 251 271 17 0 chr3 100198767 100198826 -127325752 - L2 LINE L2 -25 3288 3229 2108 100 7 0 chr3 100199335 100199625 -127324953 + AluSp SINE Alu 17 308 -5 288 0 0 0 chr3 100201289 100201321 -127323257 + (TC)n Simple_repeat Simple_repeat 1 32 0 507 142 9 28 chr3 100201330 100201436 -127323142 - L1MB3 LINE L1 -7 6176 6073 239 216 102 34 chr3 100202993 100203081 -127321497 + MIR SINE MIR 68 161 -101 23 78 0 0 chr3 100203137 100203188 -127321390 + AT_rich Low_complexity Low_complexity 1 51 0 222 361 59 0 chr3 100204415 100204534 -127320044 + MIR SINE MIR 108 233 -29 2437 188 40 58 chr3 100204949 100205496 -127319082 - MLT2B3 LTR ERVL -8 546 10 1142 70 0 37 chr3 100205744 100205931 -127318647 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 1716 107 27 19 chr3 100205949 100206210 -127318368 - AluSx SINE Alu -11 301 39 2168 222 99 9 chr3 100206331 100206979 -127317599 - L1MD1 LINE L1 -87 6155 5441 219 69 0 0 chr3 100207042 100207071 -127317507 + (A)n Simple_repeat Simple_repeat 1 29 0 1836 153 34 0 chr3 100209357 100209651 -127314927 + AluSx SINE Alu 3 306 -6 2295 209 48 30 chr3 100209798 100210323 -127314255 - MLT2B3 LTR ERVL -20 534 1 433 0 0 0 chr3 100210498 100210546 -127314032 + (TTTA)n Simple_repeat Simple_repeat 1 88 0 1705 141 10 38 chr3 100210546 100210838 -127313740 - AluSx SINE Alu -1 331 1 2209 82 0 0 chr3 100212606 100212925 -127311653 + AluY SINE Alu 1 319 0 255 291 78 10 chr3 100213279 100213382 -127311196 + MIR SINE MIR 105 214 -48 25 65 0 0 chr3 100213477 100213523 -127311055 + AT_rich Low_complexity Low_complexity 1 46 0 1746 199 58 21 chr3 100214554 100214936 -127309642 + MSTD LTR MaLR 1 396 0 24 32 0 0 chr3 100215025 100215056 -127309522 + AT_rich Low_complexity Low_complexity 1 31 0 455 86 0 14 chr3 100215319 100215389 -127309189 + (TTCC)n Simple_repeat Simple_repeat 3 71 0 603 114 0 61 chr3 100215400 100215514 -127309064 - AluSg/x SINE Alu 0 312 206 201 74 0 0 chr3 100216395 100216422 -127308156 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 233 215 11 0 chr3 100217383 100217476 -127307102 + (TA)n Simple_repeat Simple_repeat 2 95 0 209 291 0 0 chr3 100217476 100217531 -127307047 + (TATG)n Simple_repeat Simple_repeat 3 57 0 285 259 47 12 chr3 100218447 100218532 -127306046 + MIR SINE MIR 175 262 0 306 0 0 0 chr3 100219529 100219563 -127305015 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1975 120 4 0 chr3 100219566 100219841 -127304737 - AluSc SINE Alu -33 276 1 989 222 16 40 chr3 100220118 100220370 -127304208 - MLT1A2 LTR MaLR -111 263 18 644 225 28 78 chr3 100220462 100220680 -127303898 + MIR SINE MIR 49 255 -7 1706 204 6 18 chr3 100222574 100222913 -127301665 + Tigger7 DNA MER2_type 1 335 -398 246 245 151 19 chr3 100223119 100223225 -127301353 + MIR SINE MIR 109 228 -34 1592 169 3 73 chr3 100223803 100224116 -127300462 - AluJb SINE Alu -21 291 1 22 56 0 0 chr3 100226932 100226968 -127297610 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr3 100228091 100228115 -127296463 + AT_rich Low_complexity Low_complexity 1 24 0 24 77 0 0 chr3 100228159 100228211 -127296367 + AT_rich Low_complexity Low_complexity 1 52 0 2085 75 11 0 chr3 100228754 100229033 -127295545 - L1PA7 LINE L1 0 6154 5873 216 67 0 0 chr3 100229220 100229250 -127295328 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 885 29 0 0 chr3 100229250 100229353 -127295225 - L1PA4 LINE L1 -24 6131 6029 219 292 0 0 chr3 100229441 100229489 -127295089 + MIR3 SINE MIR 116 163 -45 207 0 0 0 chr3 100230395 100230418 -127294160 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 185 35 69 0 chr3 100232207 100232236 -127292342 + T-rich Low_complexity Low_complexity 2 32 0 740 155 207 31 chr3 100232502 100232695 -127291883 - L1MA10 LINE L1 -8 6326 6100 396 88 0 18 chr3 100232703 100232760 -127291818 - MER3 DNA MER1_type -153 56 1 1663 177 0 0 chr3 100232795 100233066 -127291512 - AluSx SINE Alu -41 271 1 25 0 0 0 chr3 100234207 100234232 -127290346 + AT_rich Low_complexity Low_complexity 1 25 0 361 269 34 42 chr3 100234691 100234810 -127289768 - L2 LINE L2 -6 3307 3190 209 146 21 0 chr3 100234905 100234953 -127289625 + (TA)n Simple_repeat Simple_repeat 1 49 0 288 247 234 45 chr3 100235392 100235546 -127289032 - MIR3 SINE MIR -8 200 18 31 44 0 0 chr3 100235723 100235768 -127288810 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr3 100235833 100235855 -127288723 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 100235918 100235941 -127288637 + AT_rich Low_complexity Low_complexity 1 23 0 197 351 53 0 chr3 100236270 100236364 -127288214 - MIR3 SINE MIR -9 199 101 312 233 156 0 chr3 100236378 100236468 -127288110 + L2 LINE L2 3197 3300 -13 195 167 0 0 chr3 100237075 100237117 -127287461 + (TA)n Simple_repeat Simple_repeat 2 43 0 441 54 0 0 chr3 100237168 100237224 -127287354 + (TA)n Simple_repeat Simple_repeat 1 56 0 272 338 35 49 chr3 100239112 100239254 -127285324 + L2 LINE L2 3173 3312 -1 25 0 0 0 chr3 100240228 100240253 -127284325 + AT_rich Low_complexity Low_complexity 1 25 0 208 325 199 7 chr3 100241498 100241649 -127282929 - MIR3 SINE MIR -26 182 3 287 309 145 7 chr3 100242147 100242299 -127282279 - MIR SINE MIR -40 222 50 220 388 90 0 chr3 100243032 100243166 -127281412 - MIR SINE MIR -38 224 79 823 189 22 0 chr3 100243528 100243708 -127280870 + L1MA3 LINE L1 6118 6301 -4 2282 101 0 0 chr3 100243708 100244004 -127280574 - AluSg SINE Alu -14 296 1 21 57 0 0 chr3 100244004 100244039 -127280539 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr3 100244245 100244278 -127280300 + AT_rich Low_complexity Low_complexity 1 33 0 299 308 11 19 chr3 100246547 100246742 -127277836 - MIR SINE MIR 0 262 13 34 24 0 0 chr3 100249669 100249710 -127274868 + AT_rich Low_complexity Low_complexity 1 41 0 265 317 98 8 chr3 100249851 100249974 -127274604 + MIR SINE MIR 7 140 -122 363 107 40 13 chr3 100251252 100251327 -127273251 + GA-rich Low_complexity Low_complexity 4 80 0 205 156 16 31 chr3 100251601 100251665 -127272913 + T-rich Low_complexity Low_complexity 2 64 0 3890 176 43 54 chr3 100253026 100253895 -127270683 - MER21B LTR ERV1 -4 859 1 30 27 0 0 chr3 100254781 100254818 -127269760 + AT_rich Low_complexity Low_complexity 1 37 0 1124 108 6 0 chr3 100254948 100255105 -127269473 + AluSg/x SINE Alu 141 298 -14 204 224 17 35 chr3 100255398 100255456 -127269122 + GA-rich Low_complexity Low_complexity 4 60 0 504 189 0 0 chr3 100255943 100256033 -127268545 + Tigger7 DNA MER2_type 457 546 -187 714 172 16 0 chr3 100256033 100256155 -127268423 + Tigger7 DNA MER2_type 2364 2487 0 301 261 98 65 chr3 100256272 100256456 -127268122 + MIR SINE MIR 63 252 -10 182 37 37 0 chr3 100256846 100256873 -127267705 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 325 111 56 0 chr3 100257166 100257220 -127267358 + MADE1 DNA Mariner 2 58 -22 271 320 131 85 chr3 100257800 100258106 -127266472 + L2 LINE L2 2949 3268 -4 2251 111 0 0 chr3 100258263 100258560 -127266018 - AluSx SINE Alu -15 297 1 466 205 66 36 chr3 100258584 100258750 -127265828 - L1ME1 LINE L1 -320 5846 5676 344 250 20 30 chr3 100259320 100259420 -127265158 - MER5C DNA MER1_type 0 324 226 219 187 28 140 chr3 100259441 100259469 -127265109 - MER5C DNA MER1_type -200 124 94 1479 160 45 13 chr3 100259469 100259781 -127264797 - MER33 DNA MER1_type 0 324 3 219 187 28 140 chr3 100259781 100259859 -127264719 - MER5C DNA MER1_type -230 94 30 225 271 221 8 chr3 100460106 100460228 -127064350 + LTR16C LTR ERVL 311 458 -33 413 365 60 33 chr3 100460648 100460949 -127063629 + ERVL LTR ERVL 1266 1574 -3422 755 369 85 9 chr3 100461023 100461554 -127063024 + ERVL LTR ERVL 1710 2280 -2716 488 349 32 61 chr3 100461711 100462367 -127062211 + ERVL LTR ERVL 4744 5380 -384 436 263 216 43 chr3 100462640 100462895 -127061683 + LTR16C LTR ERVL 140 438 -53 187 338 13 13 chr3 100462918 100462995 -127061583 + MIR SINE MIR 176 252 -10 1930 141 120 26 chr3 100464030 100464421 -127060157 + MSTA LTR MaLR 1 428 0 239 318 16 0 chr3 100465562 100465625 -127058953 - MIR3 SINE MIR -1 207 144 470 278 153 17 chr3 100465658 100465834 -127058744 + MIR SINE MIR 3 202 -60 234 0 0 0 chr3 100465874 100465900 -127058678 + (TG)n Simple_repeat Simple_repeat 2 27 0 24 32 0 0 chr3 100466175 100466206 -127058372 + AT_rich Low_complexity Low_complexity 1 31 0 325 342 47 0 chr3 100466208 100466357 -127058221 - MIR SINE MIR -2 260 105 307 286 0 0 chr3 100466416 100466500 -127058078 - MIR SINE MIR -135 127 44 184 284 93 72 chr3 100466885 100467121 -127057457 - L2 LINE L2 -815 2499 2259 24 32 0 0 chr3 100470274 100470305 -127054273 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 100472211 100472233 -127052345 + AT_rich Low_complexity Low_complexity 1 22 0 1701 182 33 25 chr3 100472261 100472624 -127051954 + MLT2D LTR ERVL 1 366 -48 444 333 39 20 chr3 100473309 100473513 -127051065 - ERVL LTR ERVL -941 4823 4616 441 235 45 23 chr3 100473548 100473680 -127050898 - ERVL LTR ERVL -1233 4531 4397 1291 317 110 61 chr3 100473742 100475247 -127049331 - ERVL LTR ERVL -2796 2968 1280 800 266 129 28 chr3 100476422 100476779 -127047799 - LTR33A LTR ERVL -14 509 117 277 375 23 31 chr3 100478099 100478227 -127046351 - MIR3 SINE MIR -21 187 61 1732 172 0 30 chr3 100478603 100478906 -127045672 - AluSx SINE Alu -14 298 5 999 258 139 47 chr3 100479046 100479557 -127045021 + MER69 DNA AcHobo 1 558 -668 726 173 96 29 chr3 100479580 100479788 -127044790 + MER69 DNA AcHobo 2298 2519 -7 324 94 0 0 chr3 100480359 100480412 -127044166 + (CA)n Simple_repeat Simple_repeat 2 54 0 335 337 129 15 chr3 100480751 100480953 -127043625 + MIR SINE MIR 7 231 -31 310 248 216 0 chr3 100481013 100481138 -127043440 - MIR SINE MIR -50 212 61 196 154 26 0 chr3 100481767 100481806 -127042772 + MIR SINE MIR 48 87 -175 229 171 0 0 chr3 100481808 100481849 -127042729 - MLT2A2 LTR ERVL 0 453 413 333 102 0 0 chr3 100481854 100481913 -127042665 + (TA)n Simple_repeat Simple_repeat 2 60 0 819 61 17 0 chr3 100481913 100482028 -127042550 - MLT2A2 LTR ERVL -336 117 1 3234 83 5 0 chr3 100482028 100482464 -127042114 - HERVL-A2 LTR ERVL 0 5654 5217 5779 107 36 1 chr3 100482466 100483309 -127041269 - THE1B-int LTR MaLR -708 872 1 1629 144 144 28 chr3 100483309 100483635 -127040943 - THE1B LTR MaLR 0 364 1 381 264 12 104 chr3 100483731 100483793 -127040785 - MIR SINE MIR -65 197 131 2128 114 17 0 chr3 100483793 100484090 -127040488 + AluSg SINE Alu 1 302 -8 381 264 12 104 chr3 100484090 100484190 -127040388 - MIR SINE MIR -131 131 50 644 182 0 0 chr3 100485546 100485678 -127038900 - L1MA9 LINE L1 0 6312 6181 1332 187 130 64 chr3 100486660 100486767 -127037811 + MLT1D LTR MaLR 1 100 -526 2027 103 4 4 chr3 100486767 100487038 -127037540 + AluSc SINE Alu 6 276 -33 356 21 42 0 chr3 100487038 100487086 -127037492 + (CAAAA)n Simple_repeat Simple_repeat 1 50 0 1332 187 130 64 chr3 100487086 100487447 -127037131 + MLT1D LTR MaLR 99 623 -3 27 29 0 0 chr3 100488210 100488244 -127036334 + AT_rich Low_complexity Low_complexity 1 34 0 297 51 0 0 chr3 100490414 100490453 -127034125 + (TG)n Simple_repeat Simple_repeat 1 39 0 1746 158 0 39 chr3 100491658 100491968 -127032610 - AluJo SINE Alu -14 298 1 261 0 0 0 chr3 100493276 100493305 -127031273 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 657 188 7 7 chr3 100495380 100495534 -127029044 - L1MA9 LINE L1 -2 6310 6157 546 15 0 0 chr3 100495936 100496004 -127028574 + L1PA3 LINE L1 6084 6151 -4 28 0 0 0 chr3 100496391 100496419 -127028159 + AT_rich Low_complexity Low_complexity 1 28 0 2567 61 0 3 chr3 100496962 100497274 -127027304 + AluY SINE Alu 1 311 0 346 329 176 14 chr3 100497691 100497901 -127026677 - MIR SINE MIR -8 254 11 1039 189 47 4 chr3 100498644 100498961 -127025617 - MLT1A1 LTR MaLR -1 364 1 243 298 99 13 chr3 100500667 100500818 -127023760 - L1MC/D LINE L1 -1902 5906 5743 180 0 0 0 chr3 100500829 100500849 -127023729 + (CA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr3 100501366 100501387 -127023191 + AT_rich Low_complexity Low_complexity 1 21 0 2265 93 0 26 chr3 100502798 100503108 -127021470 - AluSx SINE Alu -10 302 1 2510 47 3 22 chr3 100503922 100504239 -127020339 + AluY SINE Alu 1 311 0 260 263 26 13 chr3 100504965 100505041 -127019537 - MIR SINE MIR -116 146 70 21 36 0 0 chr3 100505180 100505208 -127019370 + AT_rich Low_complexity Low_complexity 1 28 0 260 368 42 14 chr3 100505585 100505797 -127018781 - L1MC/D LINE L1 -2081 5727 5510 318 50 0 0 chr3 100508350 100508390 -127016188 + (TA)n Simple_repeat Simple_repeat 2 41 0 242 254 71 24 chr3 100509316 100509442 -127015136 + MER103 DNA DNA 35 166 0 288 244 11 56 chr3 100509753 100509843 -127014735 + MER96 DNA MER1_type? 75 160 -15 272 265 24 12 chr3 100509773 100509856 -127014722 - MER96 DNA MER1_type? -90 85 2 * 47 33 0 0 chr3 100509948 100510009 -127014569 + AT_rich Low_complexity Low_complexity 1 61 0 313 243 27 0 chr3 100510078 100510152 -127014426 + L1MB7 LINE L1 5619 5694 -484 805 142 0 16 chr3 100510153 100510280 -127014298 + AluSg1 SINE Alu 1 125 -184 1221 121 0 5 chr3 100510343 100510512 -127014066 + AluSq SINE Alu 115 282 -31 190 0 0 0 chr3 100510512 100510533 -127014045 + (CAAAA)n Simple_repeat Simple_repeat 1 110 0 1756 217 31 29 chr3 100510533 100511016 -127013562 + L1MB7 LINE L1 5684 6167 -17 707 276 97 13 chr3 100511065 100511293 -127013285 - MIR SINE MIR -4 258 12 1182 204 47 47 chr3 100511422 100511760 -127012818 + MER58B DNA MER1_type 4 341 0 1724 193 30 22 chr3 100511899 100512261 -127012317 + MLT1A1 LTR MaLR 1 365 0 2205 99 13 3 chr3 100512295 100512599 -127011979 + AluSg SINE Alu 1 307 -3 900 312 90 14 chr3 100512980 100513393 -127011185 + LTR16A LTR ERVL 7 450 0 230 336 125 8 chr3 100514046 100514174 -127010404 + MIR SINE MIR 46 188 -74 468 0 0 0 chr3 100514191 100514243 -127010335 + (TA)n Simple_repeat Simple_repeat 1 52 0 289 360 0 16 chr3 100515390 100515515 -127009063 + GA-rich Low_complexity Low_complexity 5 127 0 228 135 0 0 chr3 100516199 100516236 -127008342 + (TGG)n Simple_repeat Simple_repeat 2 38 0 423 0 0 0 chr3 100517093 100517140 -127007438 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 386 310 120 10 chr3 100517174 100517374 -127007204 - MIR SINE MIR 0 262 41 402 21 0 0 chr3 100517892 100517939 -127006639 + (CA)n Simple_repeat Simple_repeat 2 48 0 201 321 45 60 chr3 100518202 100518336 -127006242 + MIR3 SINE MIR 25 156 -52 2094 131 0 7 chr3 100521532 100521837 -127002741 - AluSx SINE Alu -9 303 1 452 333 43 40 chr3 100522401 100522643 -127001935 - MIR SINE MIR -14 248 2 186 312 43 71 chr3 100522648 100522789 -127001789 - L3b LINE CR1 -339 1244 1108 215 348 9 36 chr3 100522863 100522975 -127001603 - MIR3 SINE MIR -9 199 91 2287 63 0 30 chr3 100523244 100523543 -127001035 + AluSq SINE Alu 5 294 -19 612 360 46 0 chr3 100523554 100523793 -127000785 + L2 LINE L2 2831 3080 -233 226 226 38 0 chr3 100524598 100524651 -126999927 + A-rich Low_complexity Low_complexity 2 56 0 239 130 0 22 chr3 100524657 100524703 -126999875 + (GGGA)n Simple_repeat Simple_repeat 4 48 0 210 371 38 29 chr3 100524872 100524977 -126999601 - MER5A DNA MER1_type -29 160 55 879 185 62 6 chr3 100524984 100525162 -126999416 - MER5A DNA MER1_type 0 189 2 267 79 0 0 chr3 100526119 100526157 -126998421 + (TCC)n Simple_repeat Simple_repeat 2 39 0 273 75 0 0 chr3 100526488 100526528 -126998050 + (TTTTTG)n Simple_repeat Simple_repeat 2 41 0 29 60 0 0 chr3 100526945 100526995 -126997583 + AT_rich Low_complexity Low_complexity 1 50 0 582 293 24 0 chr3 100526995 100527159 -126997419 - MIR SINE MIR -37 225 58 309 267 53 23 chr3 100527294 100527425 -126997153 + L1ME4a LINE L1 5978 6112 -9 250 318 16 0 chr3 100528043 100528106 -126996472 + MIR3 SINE MIR 132 195 -13 192 135 0 0 chr3 100529257 100529294 -126995284 + (CA)n Simple_repeat Simple_repeat 2 38 0 2278 95 0 10 chr3 100529558 100529863 -126994715 - AluSq SINE Alu -11 302 1 1474 136 42 90 chr3 100530793 100531103 -126993475 - AluJb SINE Alu -17 295 1 208 288 0 17 chr3 100531331 100531390 -126993188 - MIR SINE MIR -183 79 22 830 288 25 14 chr3 100531752 100532037 -126992541 + MARNA DNA Mariner 250 537 -49 203 419 16 0 chr3 100532093 100532222 -126992356 - L2 LINE L2 0 3272 3142 258 156 0 0 chr3 100533447 100533492 -126991086 + (CA)n Simple_repeat Simple_repeat 2 46 0 296 356 89 0 chr3 100534514 100534649 -126989929 + MIR3 SINE MIR 43 189 -19 531 128 0 0 chr3 100536055 100536141 -126988437 + (A)n Simple_repeat Simple_repeat 1 86 0 29 28 0 0 chr3 100536304 100536340 -126988238 + AT_rich Low_complexity Low_complexity 1 36 0 326 298 93 87 chr3 100538092 100538552 -126986026 + L1M2 LINE L1 680 1142 -5707 1710 173 3 20 chr3 100539355 100539655 -126984923 - AluJb SINE Alu -17 295 1 1156 170 65 124 chr3 100539814 100540163 -126984415 + MLT1B LTR MaLR 3 326 -64 2278 73 20 7 chr3 100540163 100540465 -126984113 - AluSq SINE Alu -7 306 1 1156 170 65 124 chr3 100540465 100540527 -126984051 + MLT1B LTR MaLR 326 390 0 245 241 0 0 chr3 100540586 100540640 -126983938 + (CA)n Simple_repeat Simple_repeat 2 55 0 431 337 106 31 chr3 100540796 100541211 -126983367 + L2 LINE L2 2195 2640 -674 180 366 153 8 chr3 100541668 100541799 -126982779 + L2 LINE L2 3122 3271 -1 239 366 0 50 chr3 100542707 100542808 -126981770 - MIR SINE MIR -93 115 20 264 279 0 13 chr3 100542820 100542899 -126981679 + (CATATA)n Simple_repeat Simple_repeat 4 81 0 595 115 70 0 chr3 100542903 100543060 -126981518 + (TA)n Simple_repeat Simple_repeat 1 168 0 1612 210 62 69 chr3 100543893 100544397 -126980181 + MLT1D LTR MaLR 6 505 0 226 238 48 16 chr3 100544499 100544562 -126980016 - Zaphod DNA AcHobo -3963 68 4 453 332 67 27 chr3 100544803 100545101 -126979477 + L2 LINE L2 1854 2163 -1151 198 0 0 0 chr3 100545145 100545167 -126979411 + (T)n Simple_repeat Simple_repeat 1 22 0 592 76 8 137 chr3 100545740 100545871 -126978707 + L1MA7 LINE L1 6172 6285 -6 22 35 0 0 chr3 100545944 100545973 -126978605 + AT_rich Low_complexity Low_complexity 1 29 0 321 281 0 0 chr3 100546222 100546286 -126978292 - tRNA-Ile-ATT tRNA tRNA -13 64 1 23 33 0 0 chr3 100546364 100546394 -126978184 + AT_rich Low_complexity Low_complexity 1 30 0 216 204 0 0 chr3 100546394 100546438 -126978140 + A-rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr3 100547561 100547583 -126976995 + AT_rich Low_complexity Low_complexity 1 22 0 828 242 150 0 chr3 100547783 100548010 -126976568 - MIR SINE MIR -1 261 1 386 221 233 12 chr3 100548731 100548879 -126975699 + MER5A DNA MER1_type 4 189 0 491 333 75 56 chr3 100550170 100550530 -126974048 + L3 LINE CR1 1006 1372 -205 227 333 37 37 chr3 100550921 100551002 -126973576 - L2 LINE L2 -20 3252 3172 1837 236 27 44 chr3 100551219 100551745 -126972833 - LTR40a LTR ERVL -2 517 1 341 352 78 0 chr3 100551849 100552028 -126972550 - MIR SINE MIR -6 256 64 447 19 0 0 chr3 100552028 100552080 -126972498 + (TA)n Simple_repeat Simple_repeat 2 53 0 462 232 0 20 chr3 100552923 100553022 -126971556 - L2 LINE L2 -4 3309 3213 180 111 0 0 chr3 100553217 100553244 -126971334 + (TTCC)n Simple_repeat Simple_repeat 2 28 0 202 352 124 0 chr3 100553970 100554075 -126970503 - MIR3 SINE MIR -6 202 85 1820 198 3 24 chr3 100555066 100555439 -126969139 + MLT1A1 LTR MaLR 1 365 0 34 55 0 0 chr3 100555892 100555947 -126968631 + AT_rich Low_complexity Low_complexity 1 55 0 9596 165 32 23 chr3 100556086 100559000 -126965578 - L1MA4 LINE L1 -2 6298 3360 22 35 0 0 chr3 100559061 100559090 -126965488 + AT_rich Low_complexity Low_complexity 1 29 0 1651 216 27 17 chr3 100559092 100559505 -126965073 - L1ME1 LINE L1 -7 6159 5743 374 279 10 19 chr3 100559592 100559696 -126964882 + MLT1I LTR MaLR 82 184 -225 405 143 43 0 chr3 100559699 100559769 -126964809 - L1MC1 LINE L1 -912 5234 5162 5840 157 11 17 chr3 100559782 100560866 -126963712 + L1MC1 LINE L1 5254 6331 -2 411 298 68 25 chr3 100560957 100561118 -126963460 + MLT1I LTR MaLR 240 407 -2 414 344 163 18 chr3 100561752 100562344 -126962234 + L2 LINE L2 2624 3306 -7 453 204 118 13 chr3 100562733 100562885 -126961693 - MER53 DNA DNA -19 170 3 296 203 62 0 chr3 100563003 100563067 -126961511 - MIR SINE MIR -127 135 68 365 278 33 11 chr3 100564082 100564172 -126960406 + MIR SINE MIR 17 108 -154 42090 51 8 2 chr3 100564539 100570657 -126953921 + L1PA4 LINE L1 1 6154 -1 324 176 0 0 chr3 100570911 100570979 -126953599 + CT-rich Low_complexity Low_complexity 1 68 0 279 0 0 0 chr3 100571254 100571285 -126953293 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 231 298 24 24 chr3 100571643 100571727 -126952851 - L2 LINE L2 -1 3271 3188 281 396 19 7 chr3 100572409 100572563 -126952015 - L2 LINE L2 -213 3059 2904 212 360 9 9 chr3 100572612 100572726 -126951852 - L2 LINE L2 -514 2800 2687 280 343 39 0 chr3 100574662 100574764 -126949814 + MIR3 SINE MIR 75 180 -28 2435 32 0 0 chr3 100575028 100575351 -126949227 - AluY SINE Alu 0 323 1 24 53 0 0 chr3 100576078 100576116 -126948462 + AT_rich Low_complexity Low_complexity 1 38 0 265 299 56 49 chr3 100576402 100576546 -126948032 + MIR SINE MIR 48 192 -70 23 33 0 0 chr3 100576717 100576747 -126947831 + AT_rich Low_complexity Low_complexity 1 30 0 1163 170 5 15 chr3 100576859 100577059 -126947519 + AluJo SINE Alu 85 282 -30 279 79 0 0 chr3 100577076 100577114 -126947464 + (TAGA)n Simple_repeat Simple_repeat 4 41 0 393 116 0 0 chr3 100577390 100577459 -126947119 + (TC)n Simple_repeat Simple_repeat 1 69 0 22 56 0 0 chr3 100578411 100578447 -126946131 + AT_rich Low_complexity Low_complexity 1 36 0 301 277 59 20 chr3 100578447 100578548 -126946030 + L2 LINE L2 3207 3311 -2 229 254 51 0 chr3 100578646 100578705 -126945873 - MIR3 SINE MIR -36 172 111 188 167 0 71 chr3 100579150 100579192 -126945386 - L2 LINE L2 -4 3268 3230 2006 49 42 70 chr3 100579497 100579784 -126944794 + AluY SINE Alu 22 300 -11 2320 188 43 23 chr3 100581284 100581767 -126942811 + MLT1D LTR MaLR 13 505 0 581 290 121 5 chr3 100581790 100581997 -126942581 + MIR SINE MIR 31 261 -1 2181 90 31 0 chr3 100582061 100582351 -126942227 - AluSp SINE Alu -12 301 3 301 372 160 8 chr3 100582906 100583269 -126941309 + L2 LINE L2 2370 2787 -527 227 348 36 0 chr3 100583387 100583499 -126941079 + L2 LINE L2 2916 3031 -241 877 171 0 19 chr3 100583769 100583927 -126940651 - LTR32 LTR ERVL 0 471 317 1467 171 128 20 chr3 100584022 100584326 -126940252 - LTR32 LTR ERVL -122 349 13 351 242 65 8 chr3 100584326 100584450 -126940128 - HERVL32 LTR ERVL 0 3418 3288 326 322 13 20 chr3 100584461 100584613 -126939965 - PRIMA41-int LTR ERV1 -1279 6477 6327 2412 206 90 93 chr3 100585146 100586311 -126938267 - HERVL32 LTR ERVL -205 3213 1987 661 256 50 16 chr3 100588918 100588960 -126935618 + L1MD3 LINE L1 7631 7670 -325 207 0 0 0 chr3 100588960 100588983 -126935595 + (CAA)n Simple_repeat Simple_repeat 2 24 0 661 256 50 16 chr3 100588983 100589182 -126935396 + L1MD3 LINE L1 7670 7880 -115 249 262 6 37 chr3 100589191 100589359 -126935219 + CT-rich Low_complexity Low_complexity 1 162 0 834 166 55 127 chr3 100589777 100589863 -126934715 + L1MD2 LINE L1 6059 6150 -209 2141 119 0 23 chr3 100589863 100590173 -126934405 + AluSq SINE Alu 3 305 -8 834 166 55 127 chr3 100590173 100590393 -126934185 + L1MD2 LINE L1 6150 6343 -16 1345 226 29 3 chr3 100590524 100590834 -126933744 - MER58B DNA MER1_type -6 335 18 194 367 56 0 chr3 100590891 100590981 -126933597 + L3 LINE CR1 1480 1574 -3 21 71 0 0 chr3 100590998 100591040 -126933538 + AT_rich Low_complexity Low_complexity 1 42 0 1060 75 54 14 chr3 100591263 100591275 -126933303 - MER107 DNA MER1_type -41 156 146 182 36 0 36 chr3 100591275 100591303 -126933275 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1060 75 54 14 chr3 100591303 100591437 -126933141 - MER107 DNA MER1_type -51 146 4 314 272 29 10 chr3 100591794 100591897 -126932681 - MER69A DNA AcHobo -70 107 3 357 272 72 16 chr3 100594669 100594794 -126929784 - MIR3 SINE MIR -16 192 61 189 0 0 0 chr3 100595009 100595030 -126929548 + (TC)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr3 100596051 100596073 -126928505 + AT_rich Low_complexity Low_complexity 1 22 0 265 347 77 28 chr3 100596340 100596625 -126927953 + L2 LINE L2 1864 2162 -1152 243 152 0 0 chr3 100597592 100597638 -126926940 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 198 266 0 62 chr3 100598043 100598107 -126926471 - MIR3 SINE MIR -38 170 111 2107 73 0 60 chr3 100600463 100600814 -126923764 - AluY SINE Alu 0 333 1 278 356 22 0 chr3 100601414 100601504 -126923074 + L2 LINE L2 2534 2625 -689 431 216 32 110 chr3 100601535 100601753 -126922825 - HAL1 LINE L1 -5 2502 2302 1227 272 139 71 chr3 100601769 100603311 -126921267 - HAL1 LINE L1 -428 2079 433 522 307 15 10 chr3 100603340 100603542 -126921036 - HAL1 LINE L1 -2185 322 120 21 0 0 0 chr3 100603653 100603674 -126920904 + AT_rich Low_complexity Low_complexity 1 21 0 272 182 18 0 chr3 100603904 100603959 -126920619 + MER53 DNA DNA 134 189 0 2111 120 5 79 chr3 100603970 100604363 -126920215 - THE1B LTR MaLR 0 364 1 11191 101 14 2 chr3 100604363 100605924 -126918654 - THE1B-int LTR MaLR 0 1580 2 2049 132 39 20 chr3 100605927 100606116 -126918462 - THE1B LTR MaLR 0 364 163 225 0 0 0 chr3 100606116 100606141 -126918437 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2049 132 39 20 chr3 100606141 100606308 -126918270 - THE1B LTR MaLR -201 163 1 410 318 61 92 chr3 100606309 100606601 -126917977 + L2 LINE L2 2884 3184 -129 2056 115 7 10 chr3 100606601 100606889 -126917689 + AluSq SINE Alu 9 295 -18 2252 75 3 3 chr3 100606889 100607218 -126917360 + AluY SINE Alu 1 329 0 410 318 61 92 chr3 100607218 100607367 -126917211 + L2 LINE L2 3182 3313 0 21 71 0 0 chr3 100607546 100607588 -126916990 + AT_rich Low_complexity Low_complexity 1 42 0 479 272 61 17 chr3 100607641 100607821 -126916757 - L2 LINE L2 -148 3165 2978 29 78 0 0 chr3 100607853 100607917 -126916661 + AT_rich Low_complexity Low_complexity 1 64 0 233 98 24 0 chr3 100608773 100608814 -126915764 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 535 295 23 12 chr3 100608828 100609001 -126915577 - MIR SINE MIR -56 206 32 788 212 29 0 chr3 100610225 100610395 -126914183 - MER5B DNA MER1_type -2 176 2 263 223 116 18 chr3 100610754 100610866 -126913712 + MER4-int LTR ERV1 1041 1163 -5435 290 45 23 0 chr3 100612791 100612835 -126911743 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 1955 141 24 0 chr3 100613647 100613938 -126910640 + AluSx SINE Alu 1 298 -14 698 326 51 28 chr3 100613978 100614456 -126910122 - L2 LINE L2 -288 3025 2528 284 258 71 39 chr3 100614717 100614872 -126909706 + LTR33A LTR ERVL 364 523 0 775 284 47 18 chr3 100615677 100615952 -126908626 + ERVL LTR ERVL 1839 2121 -3643 352 323 15 8 chr3 100615970 100616103 -126908475 - ERVL LTR ERVL -3396 2368 2235 858 344 38 4 chr3 100616156 100616755 -126907823 + ERVL LTR ERVL 2352 3034 -2730 2007 208 26 24 chr3 100616810 100617309 -126907269 + MLT1D LTR MaLR 6 505 0 876 342 37 29 chr3 100617309 100617821 -126906757 + ERVL LTR ERVL 3108 3623 -2141 1034 339 70 29 chr3 100617914 100618751 -126905827 + ERVL LTR ERVL 4056 4976 -788 254 181 169 36 chr3 100619954 100620037 -126904541 - MIR SINE MIR -8 254 161 217 134 45 45 chr3 100620590 100620657 -126903921 + (TTTG)n Simple_repeat Simple_repeat 3 69 0 22 35 0 0 chr3 100620788 100620817 -126903761 + AT_rich Low_complexity Low_complexity 1 29 0 1299 215 174 19 chr3 100621899 100622311 -126902267 + L1MD2 LINE L1 5865 6340 -19 475 243 94 109 chr3 100622349 100622551 -126902027 + MIR SINE MIR 3 201 -61 203 133 0 0 chr3 100622585 100622615 -126901963 + (CAT)n Simple_repeat Simple_repeat 3 32 0 1472 196 0 47 chr3 100622719 100623045 -126901533 - AluJb SINE Alu 0 312 1 744 308 60 91 chr3 100623201 100623737 -126900841 - L3 LINE CR1 -112 1465 947 242 143 20 51 chr3 100623867 100623965 -126900613 + (TTATA)n Simple_repeat Simple_repeat 5 99 0 38 89 0 0 chr3 100624000 100624101 -126900477 + AT_rich Low_complexity Low_complexity 1 101 0 270 325 86 8 chr3 100624974 100625091 -126899487 + MIR3 SINE MIR 38 163 -45 223 361 113 8 chr3 100625206 100625339 -126899239 + MIR3 SINE MIR 38 184 -24 249 366 30 0 chr3 100625557 100625688 -126898890 - MIR SINE MIR -10 252 118 2066 37 0 8 chr3 100626692 100626936 -126897642 + AluYb8 SINE Alu 74 315 -3 289 286 71 0 chr3 100627275 100627387 -126897191 + MIR SINE MIR 12 131 -131 195 42 0 0 chr3 100627829 100627853 -126896725 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 2381 97 0 0 chr3 100628196 100628505 -126896073 + AluSg SINE Alu 1 309 -1 1796 188 0 3 chr3 100628756 100629060 -126895518 - AluJo SINE Alu -9 303 1 365 319 134 9 chr3 100629395 100629611 -126894967 + L2 LINE L2 2931 3173 -140 28 48 0 0 chr3 100629765 100629807 -126894771 + AT_rich Low_complexity Low_complexity 1 42 0 398 291 30 22 chr3 100630638 100630772 -126893806 + MER63A DNA MER1_type 76 210 0 488 211 123 23 chr3 100630900 100631071 -126893507 - MER53 DNA DNA 0 189 2 1848 221 72 43 chr3 100632266 100632750 -126891828 + MLT1D LTR MaLR 1 498 -7 241 283 156 22 chr3 100634297 100634477 -126890101 + L2 LINE L2 2770 2973 -341 259 260 19 48 chr3 100634806 100634910 -126889668 - MLT1H LTR MaLR -19 530 430 256 102 17 34 chr3 100635534 100635593 -126888985 + (TTTTTG)n Simple_repeat Simple_repeat 2 59 0 473 294 98 0 chr3 100635635 100635890 -126888688 - L1ME LINE L1 -302 5819 5540 1675 231 101 32 chr3 100637282 100637884 -126886694 + MER63C DNA MER1_type 281 924 -6 268 221 10 10 chr3 100637993 100638097 -126886481 + (TA)n Simple_repeat Simple_repeat 2 105 0 323 271 0 42 chr3 100638204 100638300 -126886278 + MER58 DNA MER1_type 1 92 -2328 3628 217 67 28 chr3 100638307 100639003 -126885575 + Cheshire DNA MER1_type 843 1592 -828 2458 88 0 0 chr3 100639003 100639310 -126885268 - AluSg SINE Alu -3 307 1 3628 217 67 28 chr3 100639310 100639633 -126884945 + Cheshire DNA MER1_type 1592 1901 -519 17904 39 4 2 chr3 100639671 100642656 -126881922 - L1PA4 LINE L1 -2 6153 3165 25088 59 2 0 chr3 100642758 100645922 -126878656 - L1PA4 LINE L1 -2977 3169 1 1471 209 166 2 chr3 100645923 100646382 -126878196 + Cheshire DNA MER1_type 1887 2420 0 2226 69 0 4 chr3 100646498 100646774 -126877804 + AluY SINE Alu 30 304 -7 21 0 0 0 chr3 100646863 100646884 -126877694 + AT_rich Low_complexity Low_complexity 1 21 0 2315 65 0 10 chr3 100647688 100647978 -126876600 + AluY SINE Alu 1 287 -24 27 29 0 0 chr3 100647978 100648012 -126876566 + AT_rich Low_complexity Low_complexity 1 34 0 33 25 0 0 chr3 100648304 100648344 -126876234 + AT_rich Low_complexity Low_complexity 1 40 0 24 32 0 0 chr3 100648920 100648951 -126875627 + AT_rich Low_complexity Low_complexity 1 31 0 363 289 188 0 chr3 100650264 100650392 -126874186 + MER5A DNA MER1_type 32 183 -6 392 369 47 9 chr3 100651910 100652124 -126872454 - MIR SINE MIR -13 249 28 187 303 83 28 chr3 100652365 100652474 -126872104 - L2 LINE L2 -1357 1957 1843 2616 241 62 33 chr3 100652795 100653449 -126871129 + L1MD2 LINE L1 5259 5893 -466 2081 136 36 28 chr3 100653449 100653810 -126870768 + THE1B LTR MaLR 1 364 0 10995 105 19 4 chr3 100653810 100655367 -126869211 + THE1B-int LTR MaLR 1 1580 0 2151 125 39 30 chr3 100655367 100655728 -126868850 + THE1B LTR MaLR 1 364 0 2616 241 62 33 chr3 100655728 100655879 -126868699 + L1MD2 LINE L1 5892 6089 -270 238 263 18 0 chr3 100655911 100655968 -126868610 + (CA)n Simple_repeat Simple_repeat 1 58 0 1173 208 36 108 chr3 100657433 100657851 -126866727 - MLT1B LTR MaLR 0 390 3 1816 158 3 31 chr3 100659095 100659451 -126865127 - AluSx SINE Alu 0 312 3 659 152 0 0 chr3 100659768 100659867 -126864711 - LTR1B LTR ERV1 -725 101 3 2128 124 53 31 chr3 100661054 100661410 -126863168 - THE1B LTR MaLR 0 364 1 874 251 63 36 chr3 100661919 100662254 -126862324 - MER2 DNA MER2_type 0 344 1 28 0 0 0 chr3 100662262 100662290 -126862288 + AT_rich Low_complexity Low_complexity 1 28 0 464 259 190 28 chr3 100662466 100662682 -126861896 - MIR SINE MIR 0 262 12 362 279 164 44 chr3 100662791 100663017 -126861561 + MIR SINE MIR 1 253 -9 243 296 74 9 chr3 100664161 100664269 -126860309 + MIR3 SINE MIR 79 193 -15 198 275 113 78 chr3 100664347 100664489 -126860089 - L3 LINE CR1 -224 1353 1207 264 37 56 37 chr3 100664510 100664564 -126860014 + (TAAAAA)n Simple_repeat Simple_repeat 1 55 0 307 349 48 82 chr3 100664965 100665234 -126859344 + L2 LINE L2 2976 3235 -37 439 350 96 54 chr3 100667556 100667816 -126856762 - L3 LINE CR1 -39 1538 1268 1289 230 166 21 chr3 100668138 100668719 -126855859 - LTR50 LTR ERVL -91 704 1 229 263 123 73 chr3 100668886 100669062 -126855516 - L3 LINE CR1 -759 818 634 533 309 20 0 chr3 100669062 100669214 -126855364 - MER5A DNA MER1_type 0 189 35 2234 170 4 93 chr3 100669411 100669906 -126854672 + LTR32 LTR ERVL 21 471 0 280 321 22 15 chr3 100670616 100670753 -126853825 + MIR SINE MIR 125 262 0 22 0 0 0 chr3 100671220 100671242 -126853336 + AT_rich Low_complexity Low_complexity 1 22 0 287 211 9 50 chr3 100671747 100671865 -126852713 - MER5B DNA MER1_type 0 178 1 200 348 50 50 chr3 100672073 100672214 -126852364 - L2 LINE L2 -9 3263 3123 389 236 121 55 chr3 100672239 100672404 -126852174 - MER5B DNA MER1_type 0 178 3 507 249 135 27 chr3 100672527 100672712 -126851866 - MIR SINE MIR -55 207 3 639 268 93 16 chr3 100672782 100672965 -126851613 + MIR SINE MIR 5 201 -61 355 244 12 0 chr3 100673102 100673184 -126851394 - MER94 DNA DNA -35 99 17 845 275 98 68 chr3 100675257 100675726 -126848852 - MLT1G1 LTR MaLR -2 593 111 21 0 0 0 chr3 100675841 100675862 -126848716 + AT_rich Low_complexity Low_complexity 1 21 0 578 319 88 4 chr3 100676088 100676314 -126848264 - MIR SINE MIR 0 262 18 2079 243 40 23 chr3 100676400 100676955 -126847623 - MER90 LTR ERV1 0 575 12 2249 97 0 3 chr3 100676987 100677285 -126847293 + AluY SINE Alu 1 297 -14 470 330 222 4 chr3 100678030 100678260 -126846318 + L2 LINE L2 2993 3272 0 5649 110 12 0 chr3 100678470 100679294 -126845284 - L1PA15 LINE L1 0 6165 5332 2038 173 38 35 chr3 100679294 100679839 -126844739 - MLT2A2 LTR ERVL 0 554 2 6584 200 18 4 chr3 100679865 100681273 -126843305 - L1P LINE L1 -810 5336 3909 22 35 0 0 chr3 100681950 100681979 -126842599 + AT_rich Low_complexity Low_complexity 1 29 0 518 288 0 0 chr3 100682731 100682856 -126841722 - MIR SINE MIR -137 125 1 1211 208 57 60 chr3 100683331 100683697 -126840881 + MLT1A1 LTR MaLR 1 365 0 473 276 131 37 chr3 100683738 100684006 -126840572 + LTR33 LTR ERVL 135 427 -94 2020 220 30 45 chr3 100684479 100685038 -126839540 - L1ME1 LINE L1 -5 6161 5611 507 228 147 7 chr3 100685048 100685184 -126839394 + MIR SINE MIR 106 260 -2 672 270 175 9 chr3 100687239 100687565 -126837013 + L2 LINE L2 2933 3312 -1 1884 135 61 9 chr3 100688565 100688891 -126835687 + MER61A LTR ERV1 1 343 0 1976 178 81 23 chr3 100688891 100689363 -126835215 + MER61A-int LTR ERV1 1 499 -4718 344 158 40 26 chr3 100689431 100689507 -126835071 + MER61A-int LTR ERV1 631 707 -4510 349 47 0 0 chr3 100689537 100689580 -126834998 + MER61A-int LTR ERV1 1320 1362 -3855 * 23603 105 39 14 chr3 100689577 100693270 -126831308 + MER61A-int LTR ERV1 1655 5217 0 1803 140 71 9 chr3 100693271 100693593 -126830985 + MER61A LTR ERV1 2 343 0 21 36 0 0 chr3 100694378 100694406 -126830172 + AT_rich Low_complexity Low_complexity 1 28 0 2699 101 12 229 chr3 100694909 100695244 -126829334 + MER51A LTR ERV1 1 60 -574 1920 139 0 0 chr3 100695244 100695531 -126829047 + AluY SINE Alu 23 309 -2 2699 101 12 229 chr3 100695531 100696004 -126828574 + MER51A LTR ERV1 60 634 0 1483 148 93 17 chr3 100696599 100696913 -126827665 - MSTA LTR MaLR -56 319 1 6712 201 98 43 chr3 100696913 100698410 -126826168 - MSTA-int LTR MaLR 0 1580 3 1744 144 199 14 chr3 100698412 100698773 -126825805 - MSTA LTR MaLR 0 428 1 563 246 76 71 chr3 100700287 100700498 -126824080 - MIR SINE MIR -46 216 5 360 273 234 7 chr3 100701424 100701578 -126823000 - MER5A DNA MER1_type 0 189 1 392 295 87 60 chr3 100702016 100702291 -126822287 + MLT1E LTR MaLR 1 282 -285 827 312 109 5 chr3 100703447 100703841 -126820737 - L1ME4a LINE L1 -189 5932 5498 1953 111 20 79 chr3 100703941 100704294 -126820284 + MLT2A1 LTR ERVL 103 434 -10 1689 168 21 0 chr3 100704323 100704608 -126819970 - AluJo SINE Alu -11 301 11 434 156 0 13 chr3 100704616 100704693 -126819885 + MLT1B LTR MaLR 315 390 0 312 188 0 0 chr3 100705392 100705456 -126819122 + GA-rich Low_complexity Low_complexity 4 67 0 1362 186 8 8 chr3 100706267 100706515 -126818063 + AluSx SINE Alu 40 287 -25 25 31 0 0 chr3 100706515 100706547 -126818031 + AT_rich Low_complexity Low_complexity 1 32 0 967 138 25 109 chr3 100706954 100707193 -126817385 + MER20 DNA MER1_type 1 219 0 348 43 0 0 chr3 100708019 100708065 -126816513 + (CA)n Simple_repeat Simple_repeat 2 47 0 2355 121 31 8 chr3 100710305 100710661 -126813917 - THE1B LTR MaLR 0 364 1 264 290 142 59 chr3 100711953 100712122 -126812456 + MIR SINE MIR 34 216 -46 21 0 0 0 chr3 100712141 100712162 -126812416 + AT_rich Low_complexity Low_complexity 1 21 0 2140 256 72 10 chr3 100712323 100713142 -126811436 - L1ME4a LINE L1 -779 5367 4498 1068 278 52 3 chr3 100713158 100713507 -126811071 - L1ME4a LINE L1 -1736 4410 4045 224 234 16 16 chr3 100715016 100715080 -126809498 + (TG)n Simple_repeat Simple_repeat 1 64 0 * 249 298 0 11 chr3 100715079 100715173 -126809405 + GA-rich Low_complexity Low_complexity 1 93 0 278 319 33 0 chr3 100715306 100715397 -126809181 + MER5A DNA MER1_type 9 102 -87 216 0 0 0 chr3 100715555 100715579 -126808999 + (TA)n Simple_repeat Simple_repeat 2 25 0 337 225 26 73 chr3 100715659 100715810 -126808768 + MER104 DNA Tc2 7 150 -30 258 291 209 7 chr3 100715892 100716040 -126808538 - MIR SINE MIR 0 262 85 229 318 0 0 chr3 100716418 100716481 -126808097 - MIR SINE MIR 0 262 200 811 140 0 0 chr3 100716522 100716636 -126807942 - FLAM_C SINE Alu -19 124 11 206 277 112 42 chr3 100716639 100716735 -126807843 - MIR SINE MIR -49 159 58 341 275 55 0 chr3 100716831 100716940 -126807638 - MER94 DNA DNA -16 118 4 1683 108 63 71 chr3 100719811 100720189 -126804389 + THE1C LTR MaLR 1 375 0 190 207 86 69 chr3 100720406 100720464 -126804114 - L2 LINE L2 -2 3270 3212 429 70 0 0 chr3 100721267 100721324 -126803254 + (TG)n Simple_repeat Simple_repeat 2 58 0 1817 116 0 8 chr3 100723106 100723365 -126801213 - AluSc SINE Alu -52 257 1 639 117 11 0 chr3 100723460 100723554 -126801024 + AluJ/FLAM SINE Alu 3 97 -215 1571 192 6 16 chr3 100724334 100724646 -126799932 + AluJo SINE Alu 3 311 -1 1659 173 6 16 chr3 100724855 100725167 -126799411 + AluJo SINE Alu 3 311 -1 243 326 65 29 chr3 100726069 100726207 -126798371 - MIR SINE MIR -8 254 112 201 345 60 0 chr3 100726429 100726513 -126798065 - L2 LINE L2 -25 3247 3159 266 215 32 65 chr3 100726796 100726889 -126797689 + MLT1L LTR MaLR 526 615 0 25 31 0 0 chr3 100727493 100727525 -126797053 + AT_rich Low_complexity Low_complexity 1 32 0 234 303 152 8 chr3 100728488 100728620 -126795958 + MIR3 SINE MIR 45 195 -13 195 296 30 118 chr3 100728907 100729042 -126795536 - L2 LINE L2 -1 3271 3149 7056 145 120 6 chr3 100729233 100730540 -126794038 - Tigger1 DNA MER2_type 0 2418 963 1301 193 39 35 chr3 100730548 100730802 -126793776 + AluJo SINE Alu 36 290 -22 5528 133 10 14 chr3 100730815 100731686 -126792892 - Tigger1 DNA MER2_type -1445 973 106 510 108 0 24 chr3 100731686 100731769 -126792809 - MSTA LTR MaLR 0 428 348 209 392 78 19 chr3 100732397 100732665 -126791913 - L2 LINE L2 -185 3087 2804 583 241 29 109 chr3 100733328 100733705 -126790873 - L1ME4a LINE L1 -217 5904 5558 21 0 0 0 chr3 100733871 100733892 -126790686 + AT_rich Low_complexity Low_complexity 1 21 0 260 303 0 0 chr3 100734182 100734248 -126790330 + L2 LINE L2 3248 3313 0 447 332 81 24 chr3 100734286 100734533 -126790045 - MIR SINE MIR -1 261 1 2077 100 14 0 chr3 100734801 100735122 -126789456 - AluSp SINE Alu 0 325 1 474 195 81 16 chr3 100735207 100735330 -126789248 - Charlie1 DNA MER1_type -1 2760 2630 * 891 268 18 4 chr3 100735320 100735548 -126789030 - Charlie1 DNA MER1_type -2530 231 1 685 249 33 95 chr3 100737471 100737712 -126786866 + MIR SINE MIR 11 236 -26 25 0 0 0 chr3 100738528 100738553 -126786025 + AT_rich Low_complexity Low_complexity 1 25 0 1100 285 61 43 chr3 100738752 100739242 -126785336 - MLT1H LTR MaLR 0 549 12 1843 191 11 3 chr3 100739383 100739744 -126784834 - MER47A DNA MER2_type -2 364 1 274 284 35 43 chr3 100740385 100740501 -126784077 + L2 LINE L2 2364 2478 -836 1740 136 91 26 chr3 100740529 100740881 -126783697 + THE1C LTR MaLR 1 375 0 9120 135 60 4 chr3 100740881 100742377 -126782201 + THE1C-int LTR MaLR 1 1580 0 1124 108 72 42 chr3 100742379 100742623 -126781955 + THE1C LTR MaLR 3 260 -95 2228 99 0 0 chr3 100746960 100747252 -126777326 - AluSx SINE Alu 0 312 21 28 29 0 0 chr3 100749173 100749208 -126775370 + AT_rich Low_complexity Low_complexity 1 35 0 736 230 62 38 chr3 100750498 100750707 -126773871 - MER20 DNA MER1_type -5 214 1 1412 189 27 95 chr3 100750930 100751331 -126773247 - MLT1A2 LTR MaLR 0 374 1 22 80 0 0 chr3 100751552 100751602 -126772976 + AT_rich Low_complexity Low_complexity 1 50 0 245 281 37 0 chr3 100751809 100751891 -126772687 + L1ME3A LINE L1 6086 6170 0 229 303 20 126 chr3 100751953 100752151 -126772427 - L2 LINE L2 -90 3182 3006 194 356 15 84 chr3 100753585 100753978 -126770600 + L2 LINE L2 1438 1803 -1511 419 381 58 0 chr3 100754061 100754234 -126770344 + MIR SINE MIR 80 262 0 485 345 133 42 chr3 100754254 100754804 -126769774 + L2 LINE L2 1812 2411 -903 496 152 0 0 chr3 100754944 100755023 -126769555 + AluSg/x SINE Alu 219 297 -12 441 144 100 0 chr3 100755033 100755123 -126769455 + L1MB4 LINE L1 6082 6180 0 2158 105 0 20 chr3 100755335 100755639 -126768939 - AluSq SINE Alu -15 298 1 1000 169 11 33 chr3 100755639 100755823 -126768755 - AluJb SINE Alu -13 299 120 1473 128 4 0 chr3 100755834 100756069 -126768509 - L1MA2 LINE L1 0 6304 6069 939 80 22 0 chr3 100756075 100756213 -126768365 - L1MA1 LINE L1 -86 6216 6076 717 121 14 100 chr3 100756213 100756315 -126768263 - AluJb SINE Alu -182 130 42 2063 135 3 7 chr3 100756315 100756619 -126767959 + AluSg1 SINE Alu 1 303 -6 717 121 14 100 chr3 100756619 100756656 -126767922 - AluJb SINE Alu -270 42 3 25 0 0 0 chr3 100756679 100756704 -126767874 + AT_rich Low_complexity Low_complexity 1 25 0 220 277 0 0 chr3 100756754 100756801 -126767777 + MIR SINE MIR 81 127 -135 3216 260 76 35 chr3 100756801 100758160 -126766418 - HsTC2 DNA Tc2 -226 1672 76 195 343 62 47 chr3 100759057 100759331 -126765247 + L2 LINE L2 1754 2031 -1283 218 329 0 13 chr3 100760313 100760389 -126764189 - MIR SINE MIR -74 188 114 277 165 110 99 chr3 100761685 100761776 -126762802 - MIR3 SINE MIR -35 173 82 276 294 119 28 chr3 100762071 100762214 -126762364 - L3b LINE CR1 -16 1567 1412 306 351 0 46 chr3 100763207 100763358 -126761220 + MIR3 SINE MIR 51 194 -14 200 163 23 0 chr3 100763364 100763407 -126761171 + (TGAA)n Simple_repeat Simple_repeat 4 47 0 864 151 40 20 chr3 100763569 100763721 -126760857 - AluSc SINE Alu -15 294 140 1974 114 0 24 chr3 100763865 100764187 -126760391 + AluSx SINE Alu 1 315 0 1146 181 4 105 chr3 100764331 100764597 -126759981 + AluJo SINE Alu 1 239 -73 23 0 0 0 chr3 100764638 100764661 -126759917 + AT_rich Low_complexity Low_complexity 1 23 0 1654 213 64 50 chr3 100765048 100765546 -126759032 + MLT1D LTR MaLR 1 505 0 2391 102 28 25 chr3 100765815 100766178 -126758400 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr3 100766803 100766825 -126757753 + AT_rich Low_complexity Low_complexity 1 22 0 207 310 0 0 chr3 100767042 100767100 -126757478 + L2 LINE L2 3256 3313 0 1604 217 37 17 chr3 100768226 100768388 -126756190 + MLT1A1 LTR MaLR 4 161 -204 2461 108 31 0 chr3 100768388 100768741 -126755837 + THE1B LTR MaLR 1 364 0 1604 217 37 17 chr3 100768741 100768933 -126755645 + MLT1A1 LTR MaLR 161 365 0 2324 69 0 0 chr3 100769652 100769956 -126754622 - L1PA8 LINE L1 -2 6170 5867 1577 159 15 109 chr3 100770175 100770578 -126754000 + MLT1A1 LTR MaLR 1 365 0 307 217 33 0 chr3 100770579 100770639 -126753939 - MIR SINE MIR -30 232 171 303 71 429 0 chr3 100770641 100770697 -126753881 - MADE1 DNA Mariner 0 80 1 384 331 31 12 chr3 100770699 100770859 -126753719 - MIR SINE MIR -94 168 6 333 0 0 0 chr3 100772154 100772191 -126752387 + (TG)n Simple_repeat Simple_repeat 2 38 0 213 132 0 0 chr3 100772489 100772527 -126752051 + (CAA)n Simple_repeat Simple_repeat 2 39 0 192 77 0 0 chr3 100773041 100773067 -126751511 + (CCGGG)n Simple_repeat Simple_repeat 3 28 0 348 279 150 0 chr3 100775840 100775987 -126748591 - MIR SINE MIR -35 227 59 824 338 71 29 chr3 100776200 100776862 -126747716 + L2 LINE L2 1709 2398 -916 223 174 0 0 chr3 100779837 100779883 -126744695 + T-rich Low_complexity Low_complexity 1 46 0 1643 268 125 59 chr3 100781280 100781974 -126742604 - MER21B LTR ERV1 -122 741 2 1912 104 43 36 chr3 100782137 100782437 -126742141 + AluSq SINE Alu 3 304 0 1506 195 91 19 chr3 100782766 100783130 -126741448 + MLT1B LTR MaLR 1 390 0 362 309 0 24 chr3 100783234 100783357 -126741221 - MER103 DNA DNA -43 123 4 951 110 32 26 chr3 100783780 100783935 -126740643 - L1MB5 LINE L1 -7 6167 6012 3634 203 52 7 chr3 100783935 100785088 -126739490 - L1MB5 LINE L1 -78 6096 4886 457 326 0 22 chr3 100785129 100785267 -126739311 + MIR SINE MIR 7 141 -121 304 313 43 26 chr3 100785384 100785499 -126739079 - MIR SINE MIR -110 152 36 34 79 0 0 chr3 100785765 100785841 -126738737 + AT_rich Low_complexity Low_complexity 1 76 0 2039 93 47 27 chr3 100785862 100786162 -126738416 - AluSp SINE Alu -7 306 1 3128 232 46 32 chr3 100786882 100787917 -126736661 - L1ME1 LINE L1 -3 6163 5118 307 239 11 0 chr3 100787931 100788019 -126736559 - L1ME1 LINE L1 -3483 2663 2575 1713 214 71 82 chr3 100788105 100788764 -126735814 - L1MEc LINE L1 -1036 5179 4528 648 284 72 0 chr3 100788754 100788976 -126735602 - L1MEc LINE L1 -2231 3984 3747 * 282 139 0 0 chr3 100788979 100789049 -126735529 - AluSp/q SINE Alu 0 311 242 3266 222 58 76 chr3 100789049 100789629 -126734949 - L1MEc LINE L1 -2469 3746 3157 2324 78 3 0 chr3 100789629 100789924 -126734654 - AluSc SINE Alu -2 307 12 3266 222 58 76 chr3 100789924 100791016 -126733562 - L1MEc LINE L1 -3058 3157 2149 2240 117 3 0 chr3 100791721 100792029 -126732549 - AluSx SINE Alu -3 309 1 2679 240 45 8 chr3 100792688 100793305 -126731273 + MER82 DNA MER2_type 14 653 0 496 157 35 0 chr3 100793347 100793517 -126731061 + L1MA4A LINE L1 6037 6273 -30 37 62 0 0 chr3 100793835 100793900 -126730678 + AT_rich Low_complexity Low_complexity 1 65 0 285 275 66 47 chr3 100794889 100795308 -126729270 - L1ME4a LINE L1 -195 5926 5465 22 35 0 0 chr3 100799100 100799129 -126725449 + AT_rich Low_complexity Low_complexity 1 29 0 1432 112 108 12 chr3 100801748 100802006 -126722572 - THE1C LTR MaLR -92 283 1 1556 162 41 7 chr3 100802029 100802336 -126722242 + AluJo SINE Alu 3 318 0 282 317 50 0 chr3 100803445 100803565 -126721013 - L2 LINE L2 0 3313 3188 1789 88 29 0 chr3 100805218 100805505 -126719073 - AluSx SINE Alu 0 332 39 563 237 23 23 chr3 100807525 100807698 -126716880 + L1MC4a LINE L1 5318 5490 -2318 184 298 24 113 chr3 100807702 100807826 -126716752 - L2 LINE L2 -5 3308 3196 834 305 69 0 chr3 100807831 100808136 -126716442 + L1MC4a LINE L1 5501 5826 -1982 21 0 0 0 chr3 100808416 100808437 -126716141 + AT_rich Low_complexity Low_complexity 1 21 0 1259 112 51 0 chr3 100810035 100810232 -126714346 - MER2 DNA MER2_type -138 207 1 39 60 0 0 chr3 100810244 100810311 -126714267 + AT_rich Low_complexity Low_complexity 1 67 0 24 0 0 0 chr3 100810512 100810536 -126714042 + AT_rich Low_complexity Low_complexity 1 24 0 239 119 12 36 chr3 100810560 100810644 -126713934 + (TTTAA)n Simple_repeat Simple_repeat 5 86 0 309 252 9 0 chr3 100810648 100810759 -126713819 + (TA)n Simple_repeat Simple_repeat 1 112 0 22 35 0 0 chr3 100811399 100811428 -126713150 + AT_rich Low_complexity Low_complexity 1 29 0 250 255 45 60 chr3 100811561 100811726 -126712852 - MIR SINE MIR -56 206 45 21 36 0 0 chr3 100811872 100811900 -126712678 + AT_rich Low_complexity Low_complexity 1 28 0 1343 229 14 7 chr3 100811944 100812241 -126712337 - AluJo SINE Alu -13 299 1 1820 106 31 87 chr3 100812419 100812740 -126711838 - AluSq SINE Alu -8 305 3 726 229 100 0 chr3 100813554 100813724 -126710854 + MER58A DNA MER1_type 37 223 -1 207 0 0 0 chr3 100814114 100814137 -126710441 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 210 330 152 9 chr3 100814619 100814731 -126709847 - MIR3 SINE MIR -70 138 11 227 103 26 0 chr3 100816519 100816558 -126708020 + (CA)n Simple_repeat Simple_repeat 1 40 0 1122 63 0 0 chr3 100816640 100816782 -126707796 - L1PA3 LINE L1 0 6155 6014 886 171 0 50 chr3 100817185 100817366 -126707212 + MER3 DNA MER1_type 27 198 -11 35 78 0 0 chr3 100818843 100818920 -126705658 + AT_rich Low_complexity Low_complexity 1 77 0 25 31 0 0 chr3 100819145 100819177 -126705401 + AT_rich Low_complexity Low_complexity 1 32 0 286 121 276 0 chr3 100821513 100821571 -126703007 + MADE1 DNA Mariner 2 75 -5 287 313 45 9 chr3 100821635 100821747 -126702831 - MIR SINE MIR -8 254 139 230 271 47 12 chr3 100822798 100822883 -126701695 - L1ME LINE L1 -465 5656 5569 1971 125 14 7 chr3 100823224 100823520 -126701058 - AluSx SINE Alu -14 298 1 21 0 0 0 chr3 100823802 100823823 -126700755 + AT_rich Low_complexity Low_complexity 1 21 0 3635 74 2 2 chr3 100824511 100824998 -126699580 + L1PA7 LINE L1 5665 6151 -3 2291 78 10 3 chr3 100824999 100825305 -126699273 + AluSx SINE Alu 1 308 -4 423 326 216 18 chr3 100825459 100825677 -126698901 + MIR SINE MIR 2 262 0 383 244 221 0 chr3 100825716 100825843 -126698735 - MIR SINE MIR -47 215 61 228 67 0 0 chr3 100826250 100826280 -126698298 + (CA)n Simple_repeat Simple_repeat 1 30 0 306 235 0 0 chr3 100828666 100828747 -126695831 + (TATG)n Simple_repeat Simple_repeat 4 84 0 23 54 0 0 chr3 100830422 100830459 -126694119 + AT_rich Low_complexity Low_complexity 1 37 0 793 223 61 39 chr3 100830778 100831035 -126693543 - MLT1A2 LTR MaLR -137 253 1 453 81 0 0 chr3 100831280 100831342 -126693236 + (TA)n Simple_repeat Simple_repeat 1 62 0 303 402 0 33 chr3 100831654 100831838 -126692740 + L1MEd LINE L1 242 419 -5700 667 292 59 45 chr3 100832020 100832643 -126691935 + L1MEd LINE L1 623 1254 -4865 * 5775 147 40 24 chr3 100832641 100833343 -126691235 + L1MA4A LINE L1 4657 5347 -956 2331 113 8 6 chr3 100833343 100833697 -126690881 + THE1A LTR MaLR 1 355 0 5775 147 40 24 chr3 100833697 100834365 -126690213 + L1MA4A LINE L1 5347 6048 -255 1790 138 42 7 chr3 100834365 100834648 -126689930 - AluSq SINE Alu -20 293 1 5775 147 40 24 chr3 100834648 100834908 -126689670 + L1MA4A LINE L1 6048 6303 0 1863 150 0 3 chr3 100834914 100835230 -126689348 + AluSx SINE Alu 1 315 0 276 206 32 32 chr3 100835384 100835447 -126689131 - L2 LINE L2 -31 3282 3220 320 264 78 103 chr3 100835467 100836002 -126688576 + L1ME4a LINE L1 5378 5899 -222 218 91 23 45 chr3 100836236 100836280 -126688298 + (CAAAA)n Simple_repeat Simple_repeat 1 43 0 283 242 15 0 chr3 100837270 100837336 -126687242 - L3 LINE CR1 -1 1576 1510 338 219 0 0 chr3 100839174 100839247 -126685331 - L1PB1 LINE L1 -895 5251 5179 * 3808 85 5 4 chr3 100839245 100839802 -126684776 + L1PB1 LINE L1 5234 5791 -360 198 0 0 0 chr3 100839802 100839824 -126684754 + (TA)n Simple_repeat Simple_repeat 1 22 0 211 0 28 56 chr3 100839830 100839866 -126684712 + (CATAT)n Simple_repeat Simple_repeat 1 35 0 2189 146 3 8 chr3 100839877 100840246 -126684332 + L1PB1 LINE L1 5783 6149 -2 1976 160 90 5 chr3 100840252 100840620 -126683958 - MSTB LTR MaLR -27 399 1 21 0 0 0 chr3 100841990 100842011 -126682567 + AT_rich Low_complexity Low_complexity 1 21 0 23 54 0 0 chr3 100842853 100842890 -126681688 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr3 100843533 100843558 -126681020 + AT_rich Low_complexity Low_complexity 1 25 0 741 234 48 21 chr3 100843967 100844155 -126680423 + MER58A DNA MER1_type 28 220 -4 2412 40 0 20 chr3 100844158 100844462 -126680116 - AluY SINE Alu -13 298 1 34 24 0 0 chr3 100845030 100845071 -126679507 + AT_rich Low_complexity Low_complexity 1 41 0 500 270 226 24 chr3 100846994 100847452 -126677126 + MLT1H1 LTR MaLR 3 519 -36 3297 65 8 29 chr3 100848479 100848955 -126675623 + L1PA8 LINE L1 5705 6170 -2 284 361 46 0 chr3 100849076 100849206 -126675372 - L2 LINE L2 -540 2774 2639 671 237 105 43 chr3 100849263 100849520 -126675058 + L2 LINE L2 2952 3224 -89 501 255 122 11 chr3 100849561 100849725 -126674853 + MER5A DNA MER1_type 4 188 -1 3302 68 9 0 chr3 100849751 100850190 -126674388 - L1PA7 LINE L1 -3 6151 5709 208 331 68 97 chr3 100850289 100850537 -126674041 - L2 LINE L2 -838 2476 2236 24 32 0 0 chr3 100851473 100851504 -126673074 + AT_rich Low_complexity Low_complexity 1 31 0 377 289 38 25 chr3 100852244 100852403 -126672175 - LTR16C LTR ERVL -15 476 316 1873 297 130 5 chr3 100852681 100853519 -126671059 + L2 LINE L2 577 1519 -1795 1786 216 122 32 chr3 100853581 100854365 -126670213 - MER69 DNA AcHobo -9 2517 1663 2140 267 72 27 chr3 100854390 100854897 -126669681 - MER69 DNA AcHobo -526 700 154 3630 121 15 36 chr3 100854897 100855280 -126669298 + LTR43 LTR ERV1 1 368 -234 2167 126 3 0 chr3 100855280 100855589 -126668989 + AluSg SINE Alu 1 310 0 3630 121 15 36 chr3 100855589 100855818 -126668760 + LTR43 LTR ERV1 368 600 -2 2140 267 72 27 chr3 100855818 100855977 -126668601 - MER69 DNA AcHobo -1072 154 4 445 302 83 57 chr3 100856007 100856272 -126668306 + L2 LINE L2 1632 1903 -1411 1024 275 212 10 chr3 100856296 100856867 -126667711 + L2 LINE L2 2369 3057 -256 51 17 0 0 chr3 100856867 100856925 -126667653 + AT_rich Low_complexity Low_complexity 1 58 0 267 194 115 136 chr3 100856981 100857172 -126667406 + L2 LINE L2 3126 3312 -1 2095 143 0 0 chr3 100857273 100857574 -126667004 - AluSx SINE Alu -11 301 1 3311 123 40 19 chr3 100858257 100858856 -126665722 - MER4B LTR ERV1 0 779 1 329 324 101 7 chr3 100858872 100859020 -126665558 + MER5B DNA MER1_type 17 178 0 825 225 60 10 chr3 100859247 100859447 -126665131 + MER63A DNA MER1_type 1 210 0 208 368 0 0 chr3 100859486 100859562 -126665016 - MIR SINE MIR -58 150 75 38 22 0 0 chr3 100859901 100859946 -126664632 + AT_rich Low_complexity Low_complexity 1 45 0 238 159 58 14 chr3 100860154 100860223 -126664355 + (CATATA)n Simple_repeat Simple_repeat 6 77 0 1848 199 33 44 chr3 100860228 100860680 -126663898 - MER82 DNA MER2_type -6 647 201 1106 181 10 15 chr3 100860972 100861176 -126663402 - MER82 DNA MER2_type -449 204 2 2256 102 0 0 chr3 100861994 100862289 -126662289 - AluSc SINE Alu -14 295 1 332 350 42 14 chr3 100862312 100862455 -126662123 - HAL1b LINE L1 -825 523 377 32 43 0 0 chr3 100862873 100862919 -126661659 + AT_rich Low_complexity Low_complexity 1 46 0 563 207 63 0 chr3 100864065 100864176 -126660402 + MER63 DNA MER1_type 1 744 -92 181 369 181 0 chr3 100864253 100864402 -126660176 + MIR SINE MIR 33 208 -54 726 265 81 70 chr3 100864476 100864846 -126659732 - MLT1A2 LTR MaLR 0 374 1 253 196 0 0 chr3 100865113 100865169 -126659409 + HsTC2 DNA Tc2 1 56 -1842 226 203 43 0 chr3 100865604 100865673 -126658905 - LTR37A LTR ERV1 0 426 355 14298 167 23 21 chr3 100865836 100868312 -126656266 + L1MA3 LINE L1 17 2496 -5069 261 0 0 0 chr3 100870058 100870087 -126654491 + (CA)n Simple_repeat Simple_repeat 1 29 0 14009 169 17 23 chr3 100870087 100874357 -126650221 + L1MA3 LINE L1 2494 6735 -830 2988 130 21 19 chr3 100874471 100875001 -126649577 + L1MA3 LINE L1 7193 7723 -1 25 0 0 0 chr3 100875908 100875933 -126648645 + AT_rich Low_complexity Low_complexity 1 25 0 775 197 22 45 chr3 100877325 100877503 -126647075 - MLT1D LTR MaLR 0 505 332 1273 221 91 18 chr3 100877877 100878217 -126646361 + MLT1A1 LTR MaLR 1 365 0 2839 237 6 19 chr3 100878950 100879578 -126645000 + MER82 DNA MER2_type 21 640 -13 222 91 0 0 chr3 100880864 100880897 -126643681 + (CA)n Simple_repeat Simple_repeat 1 33 0 2415 130 8 3 chr3 100880991 100881353 -126643225 + THE1B LTR MaLR 1 364 0 1556 173 0 4 chr3 100882564 100882830 -126641748 + Tigger5 DNA MER2_type 2044 2308 -15 183 42 0 0 chr3 100882853 100882877 -126641701 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 496 69 0 14 chr3 100882878 100882950 -126641628 - HY1 scRNA scRNA -1 111 41 374 263 59 143 chr3 100883371 100883743 -126640835 - L2 LINE L2 -124 3189 2849 1027 287 30 24 chr3 100884065 100884399 -126640179 + MER93a LTR ERV1 67 402 0 268 225 150 100 chr3 100884603 100884723 -126639855 - L2 LINE L2 -481 2833 2708 230 275 14 0 chr3 100886251 100886320 -126638258 + Tigger4(Zombi) DNA MER2_type 2012 2081 -650 849 224 15 5 chr3 100886324 100886529 -126638049 + L1MB8 LINE L1 5857 6063 -115 2308 260 73 16 chr3 100886544 100887912 -126636666 + L1M3c LINE L1 5 1501 -4640 6138 165 31 37 chr3 100887914 100889139 -126635439 - Tigger7 DNA MER2_type -3 2484 1267 354 265 51 0 chr3 100889148 100889265 -126635313 - MER46C DNA MER2_type -208 130 8 241 200 20 0 chr3 100889419 100889469 -126635109 - MER3 DNA MER1_type -116 93 43 549 167 130 25 chr3 100889769 100889931 -126634647 - L1M4 LINE L1 -2108 4038 3860 5074 167 28 9 chr3 100889946 100890875 -126633703 - L1MC1 LINE L1 -1 6332 5386 472 254 212 23 chr3 100890877 100891184 -126633394 - L1M4 LINE L1 -2290 3856 3492 724 94 0 0 chr3 100891272 100891368 -126633210 - L1MC/D LINE L1 -714 5619 5524 6064 96 12 12 chr3 100891403 100891496 -126633082 + L1PA14 LINE L1 5267 5359 -802 2198 109 10 0 chr3 100891496 100891799 -126632779 + AluSx SINE Alu 1 306 -6 6064 96 12 12 chr3 100891799 100892598 -126631980 + L1PA14 LINE L1 5358 6159 -2 295 183 99 0 chr3 100893138 100893209 -126631369 + MLT1E2 LTR MaLR 541 618 -8 21 0 0 0 chr3 100893758 100893779 -126630799 + AT_rich Low_complexity Low_complexity 1 21 0 7368 33 6 1 chr3 100894753 100895727 -126628851 + L1PA4 LINE L1 5177 6154 -1 203 333 25 12 chr3 100896216 100896297 -126628281 - MIR3 SINE MIR -45 163 82 881 145 0 0 chr3 100896783 100896907 -126627671 + AluSq/x SINE Alu 2 125 -187 2025 131 121 23 chr3 100897267 100897655 -126626923 + MSTA LTR MaLR 3 428 0 2151 119 0 13 chr3 100898291 100898601 -126625977 + AluSg SINE Alu 5 310 0 303 263 20 10 chr3 100898850 100898949 -126625629 + MLT1L LTR MaLR 506 605 -10 1145 286 62 31 chr3 100899114 100899533 -126625045 + LTR16A LTR ERVL 16 447 -3 282 73 0 0 chr3 100901649 100901690 -126622888 + (CA)n Simple_repeat Simple_repeat 2 42 0 252 271 0 93 chr3 100903111 100903218 -126621360 - MER5B DNA MER1_type -1 177 81 1752 227 12 10 chr3 100903343 100903753 -126620825 + MLT2D LTR ERVL 2 412 -2 819 154 35 102 chr3 100903756 100903859 -126620719 + MLT1L-int LTR MaLR 2 110 -1261 2128 134 0 6 chr3 100903859 100904173 -126620405 - AluSx SINE Alu 0 312 1 819 154 35 102 chr3 100904173 100904303 -126620275 + MLT1L-int LTR MaLR 110 335 -1036 738 308 39 13 chr3 100904743 100904977 -126619601 - MIR SINE MIR -21 241 2 1421 317 77 25 chr3 100905055 100905912 -126618666 - L2 LINE L2 -5 3308 2241 306 191 0 0 chr3 100905976 100906044 -126618534 - MLT2B1 LTR ERVL -2 518 451 350 147 52 9 chr3 100906056 100906172 -126618406 + (TA)n Simple_repeat Simple_repeat 1 121 0 218 203 51 0 chr3 100906181 100906240 -126618338 + (TCTCTG)n Simple_repeat Simple_repeat 5 66 0 1779 236 77 5 chr3 100906262 100906689 -126617889 - MLT2B1 LTR ERVL -62 458 1 225 149 21 21 chr3 100906691 100906730 -126617848 - L2 LINE L2 -1099 2215 2177 731 258 6 6 chr3 100906730 100906893 -126617685 + MER5A DNA MER1_type 1 163 -26 1680 198 31 49 chr3 100906909 100907298 -126617280 - MLT1B LTR MaLR -6 384 3 347 338 50 42 chr3 100907307 100907547 -126617031 - L2 LINE L2 -1131 2183 1942 2626 216 43 24 chr3 100907563 100908276 -126616302 - L1P LINE L1 -745 5401 4675 1303 231 0 0 chr3 100908422 100908660 -126615918 + Tigger5 DNA MER2_type 1 238 -2085 276 136 0 0 chr3 100908655 100908699 -126615879 + Tigger5 DNA MER2_type 2090 2133 -190 * 21 0 0 0 chr3 100908998 100909019 -126615559 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 100910350 100910372 -126614206 + AT_rich Low_complexity Low_complexity 1 22 0 189 171 0 0 chr3 100910399 100910434 -126614144 + (TG)n Simple_repeat Simple_repeat 2 36 0 2349 86 0 3 chr3 100911116 100911407 -126613171 + AluSx SINE Alu 2 291 -21 180 0 0 0 chr3 100911407 100911427 -126613151 + (TA)n Simple_repeat Simple_repeat 2 21 0 1736 249 59 32 chr3 100911465 100912526 -126612052 - L1ME2 LINE L1 -169 5995 4935 844 262 95 66 chr3 100912498 100913108 -126611470 - L1M4 LINE L1 -998 5148 4521 * 247 176 93 102 chr3 100913127 100913235 -126611343 - MLT1G1 LTR MaLR -16 579 473 307 248 50 21 chr3 100913401 100913542 -126611036 - MLT1H LTR MaLR -381 168 24 539 165 18 9 chr3 100913664 100913773 -126610805 + L1PA15 LINE L1 6041 6150 -15 11202 149 17 13 chr3 100913995 100916242 -126608336 - L1P4 LINE L1 -580 5583 3334 24286 39 6 0 chr3 100916242 100920020 -126604558 - L1PA4 LINE L1 0 6155 2359 1031 138 6 35 chr3 100920123 100920297 -126604281 + AluSg/x SINE Alu 144 312 0 180 0 0 0 chr3 100920499 100920519 -126604059 + (T)n Simple_repeat Simple_repeat 1 20 0 41455 40 27 2 chr3 100921104 100927084 -126597494 - L1PA3 LINE L1 -4 6151 13 2115 109 11 0 chr3 100927274 100927559 -126597019 + AluSc SINE Alu 1 288 -21 186 189 0 0 chr3 100927627 100927664 -126596914 + (TATG)n Simple_repeat Simple_repeat 3 39 0 208 360 81 22 chr3 100929787 100929923 -126594655 - L2 LINE L2 -33 3239 3096 33 0 0 0 chr3 100930111 100930144 -126594434 + AT_rich Low_complexity Low_complexity 1 33 0 47 19 0 0 chr3 100930709 100930763 -126593815 + AT_rich Low_complexity Low_complexity 1 54 0 27 0 0 0 chr3 100930813 100930840 -126593738 + AT_rich Low_complexity Low_complexity 1 27 0 456 286 141 0 chr3 100931502 100931729 -126592849 + MER46C DNA MER2_type 79 337 -1 181 314 0 20 chr3 100932486 100932537 -126592041 + MIR SINE MIR 16 65 -143 713 231 171 5 chr3 100932983 100933199 -126591379 + MIR SINE MIR 6 257 -5 468 257 98 45 chr3 100933224 100933469 -126591109 + MIR SINE MIR 5 262 0 299 329 92 0 chr3 100933604 100933756 -126590822 - L2 LINE L2 -968 2346 2181 289 345 115 40 chr3 100934302 100934771 -126589807 - L2 LINE L2 0 3313 2810 1146 205 31 27 chr3 100935219 100935477 -126589101 - MLT1A2 LTR MaLR -111 263 5 284 311 47 0 chr3 100935504 100935610 -126588968 - L2 LINE L2 -968 2346 2236 329 327 124 7 chr3 100935724 100935877 -126588701 - MIR SINE MIR -72 190 20 186 361 0 92 chr3 100936285 100936415 -126588163 + L2 LINE L2 3139 3256 -16 12788 210 37 8 chr3 100937124 100942133 -126582445 + L1PBa LINE L1 407 5810 -1052 22 0 0 0 chr3 100942285 100942307 -126582271 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr3 100943078 100943102 -126581476 + (CA)n Simple_repeat Simple_repeat 2 25 0 1720 162 7 17 chr3 100943527 100943823 -126580755 + AluJo SINE Alu 1 293 -19 363 255 66 47 chr3 100944626 100944838 -126579740 - L1ME LINE L1 -346 5775 5560 2161 131 3 3 chr3 100946344 100946657 -126577921 - AluSq SINE Alu 0 313 1 1957 159 0 13 chr3 100947130 100947445 -126577133 - AluSx SINE Alu -1 311 1 6186 192 26 74 chr3 100947562 100949207 -126575371 + L1P LINE L1 1783 3349 -2797 2642 64 3 0 chr3 100949196 100949541 -126575037 - L1P LINE L1 -4455 1691 1346 * 4425 68 2 0 chr3 100949541 100950119 -126574459 + L1P LINE L1 1705 2283 -3863 200 59 29 0 chr3 100950221 100950255 -126574323 + (TA)n Simple_repeat Simple_repeat 1 35 0 189 171 0 0 chr3 100950313 100950348 -126574230 + GA-rich Low_complexity Low_complexity 1 35 0 393 130 0 0 chr3 100950652 100950706 -126573872 + AluS SINE Alu 229 282 -20 261 0 0 0 chr3 100950710 100950739 -126573839 + (CAA)n Simple_repeat Simple_repeat 3 31 0 428 14 58 0 chr3 100950739 100950808 -126573770 + (TA)n Simple_repeat Simple_repeat 1 73 0 2078 132 30 0 chr3 100950875 100951178 -126573400 + AluSx SINE Alu 1 312 0 1626 215 55 53 chr3 100951187 100951680 -126572898 + MLT1D LTR MaLR 7 500 -5 309 285 15 88 chr3 100952065 100952202 -126572376 + L2 LINE L2 3141 3267 -5 183 279 49 49 chr3 100952579 100952640 -126571938 - MIR SINE MIR -193 69 9 2291 142 86 8 chr3 100952683 100953078 -126571500 + MSTB LTR MaLR 1 426 0 591 52 21 21 chr3 100954275 100954372 -126570206 + (TCTA)n Simple_repeat Simple_repeat 2 98 0 5946 253 58 62 chr3 100954719 100955546 -126569032 - HERVL LTR ERVL -447 5317 4488 241 128 0 26 chr3 100955546 100955585 -126568993 - U1 snRNA snRNA -121 44 7 5946 253 58 62 chr3 100955585 100956359 -126568219 - HERVL LTR ERVL -1276 4488 3685 2197 105 3 10 chr3 100956359 100956665 -126567913 + AluSg SINE Alu 1 304 -6 5946 253 58 62 chr3 100956665 100956984 -126567594 - HERVL LTR ERVL -2079 3685 3366 483 361 39 0 chr3 100957004 100957212 -126567366 + HERVL LTR ERVL 4727 4942 -712 2059 250 30 34 chr3 100957213 100957749 -126566829 + MLT1F1 LTR MaLR 33 566 -1 2271 298 49 16 chr3 100957834 100958587 -126565991 - L2 LINE L2 -491 2823 2046 258 300 77 65 chr3 100958586 100958756 -126565822 + L2 LINE L2 2592 2763 -551 * 21 36 0 0 chr3 100959131 100959159 -126565419 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 100959332 100959354 -126565224 + AT_rich Low_complexity Low_complexity 1 22 0 22 88 0 0 chr3 100961249 100961306 -126563272 + AT_rich Low_complexity Low_complexity 1 57 0 422 278 80 65 chr3 100961315 100961578 -126563000 - HAL1 LINE L1 0 2507 2241 523 317 115 44 chr3 100961601 100962637 -126561941 - HAL1 LINE L1 -404 2103 995 251 243 14 40 chr3 100962757 100962831 -126561747 - L2 LINE L2 0 3313 3242 333 308 79 84 chr3 100962934 100963210 -126561368 + L1ME LINE L1 37 312 -5758 1674 159 0 42 chr3 100963210 100963519 -126561059 + AluJb SINE Alu 1 296 -16 333 308 79 84 chr3 100963519 100963671 -126560907 + L1ME LINE L1 312 463 -5607 352 290 66 48 chr3 100963878 100964145 -126560433 + L1ME LINE L1 511 751 -5319 705 288 62 41 chr3 100964145 100964485 -126560093 - LTR16B LTR ERVL 0 464 118 345 389 65 15 chr3 100964653 100964977 -126559601 - HERVL LTR ERVL -727 4927 4588 4140 160 38 52 chr3 100964998 100966311 -126558267 + LTR12 LTR ERV1 5 691 -23 766 332 116 10 chr3 100966323 100966730 -126557848 - HERVL LTR ERVL -927 4558 4109 287 174 102 71 chr3 100966949 100967047 -126557531 - HERVL LTR ERVL -1658 3827 3727 228 415 0 0 chr3 100967178 100967284 -126557294 - LTR16B LTR ERVL -332 132 27 2041 283 71 25 chr3 100967314 100968139 -126556439 + L1MCa LINE L1 927 2028 -4579 1965 125 44 3 chr3 100968139 100968436 -126556142 + AluSq SINE Alu 1 309 -4 2041 283 71 25 chr3 100968436 100968841 -126555737 + L1MCa LINE L1 2028 2413 -4194 585 289 34 4 chr3 100968872 100969111 -126555467 + L1MCa LINE L1 2504 2749 -3677 309 250 67 29 chr3 100969348 100969452 -126555126 + MER46C DNA MER2_type 1 108 -230 1587 98 56 0 chr3 100969552 100969767 -126554811 + MER30 DNA MER1_type 4 230 0 5278 230 24 7 chr3 101019987 101020150 -126504428 + L1P LINE L1 3170 3329 -2817 216 0 0 0 chr3 101020150 101020174 -126504404 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 5278 230 24 7 chr3 101020174 101021345 -126503233 + L1P LINE L1 3329 4527 -1619 3215 139 63 6 chr3 101021447 101022101 -126502477 + L1MC1 LINE L1 5130 5826 -507 5412 49 4 0 chr3 101022102 101022798 -126501780 + L1P LINE L1 1 699 -5447 404 208 42 21 chr3 101023495 101023591 -126500987 + L2 LINE L2 3216 3313 0 196 268 0 0 chr3 101024219 101024260 -126500318 - MIR3 SINE MIR -10 198 158 197 225 69 6 chr3 101025055 101025146 -126499432 - MIR SINE MIR -53 209 102 198 0 0 0 chr3 101025318 101025340 -126499238 + (T)n Simple_repeat Simple_repeat 1 22 0 548 189 31 135 chr3 101025475 101025572 -126499006 - MER63 DNA MER1_type -13 1049 986 1862 146 3 13 chr3 101025572 101025874 -126498704 + AluSx SINE Alu 1 299 -13 548 189 31 135 chr3 101025874 101025998 -126498580 - MER63 DNA MER1_type -76 986 851 206 259 19 0 chr3 101026102 101026156 -126498422 - L2 LINE L2 -2 3311 3257 342 284 74 0 chr3 101026495 101026590 -126497988 + MER5A DNA MER1_type 4 105 -84 29 28 0 0 chr3 101027033 101027069 -126497509 + AT_rich Low_complexity Low_complexity 1 36 0 261 75 0 0 chr3 101027360 101027400 -126497178 + (A)n Simple_repeat Simple_repeat 1 40 0 27 0 0 0 chr3 101029393 101029420 -126495158 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr3 101029836 101029864 -126494714 + AT_rich Low_complexity Low_complexity 1 28 0 429 392 99 21 chr3 101030399 101031263 -126493315 + L2 LINE L2 1750 2681 -633 1299 161 0 23 chr3 101031947 101032207 -126492371 - L1MA5 LINE L1 -5 6295 6042 772 311 107 28 chr3 101034027 101034493 -126490085 - MLT1J LTR MaLR 0 511 9 201 39 0 0 chr3 101034606 101034632 -126489946 + (CAA)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr3 101034934 101034955 -126489623 + AT_rich Low_complexity Low_complexity 1 21 0 1465 46 0 6 chr3 101036132 101036337 -126488241 + AluY SINE Alu 110 313 0 21 71 0 0 chr3 101036369 101036411 -126488167 + AT_rich Low_complexity Low_complexity 1 42 0 395 292 2 4 chr3 101036680 101036804 -126487774 - MLT1H LTR MaLR -383 166 1 21 0 0 0 chr3 101038430 101038451 -126486127 + AT_rich Low_complexity Low_complexity 1 21 0 23 92 0 0 chr3 101038618 101038683 -126485895 + AT_rich Low_complexity Low_complexity 1 65 0 28 71 0 0 chr3 101038732 101038788 -126485790 + AT_rich Low_complexity Low_complexity 1 56 0 313 242 107 50 chr3 101038927 101039225 -126485353 - L1M4 LINE L1 -2956 3190 2876 694 231 51 46 chr3 101039242 101039458 -126485120 + MIR SINE MIR 12 228 -34 387 73 0 0 chr3 101040103 101040158 -126484420 + (TG)n Simple_repeat Simple_repeat 1 55 0 216 0 0 0 chr3 101040649 101040673 -126483905 + (A)n Simple_repeat Simple_repeat 1 24 0 216 0 0 0 chr3 101041403 101041427 -126483151 + (A)n Simple_repeat Simple_repeat 1 24 0 29 0 0 0 chr3 101042735 101042764 -126481814 + AT_rich Low_complexity Low_complexity 1 29 0 5179 187 37 28 chr3 101043719 101044973 -126479605 + L1 LINE L1 2713 3977 -2169 259 254 42 14 chr3 101045519 101045590 -126478988 - L1ME1 LINE L1 -28 6138 6066 24 32 0 0 chr3 101046390 101046421 -126478157 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr3 101046844 101046869 -126477709 + AT_rich Low_complexity Low_complexity 1 25 0 831 145 227 137 chr3 101047963 101048364 -126476214 + LTR23 LTR ERV1 1 437 0 1864 132 29 16 chr3 101048638 101048979 -126475599 - MER4A LTR ERV1 0 664 261 658 109 0 30 chr3 101048979 101049080 -126475498 - MER4A LTR ERV1 -566 98 1 21 71 0 0 chr3 101049290 101049332 -126475246 + AT_rich Low_complexity Low_complexity 1 42 0 228 182 0 0 chr3 101049349 101049393 -126475185 + (TA)n Simple_repeat Simple_repeat 1 44 0 3268 83 12 30 chr3 101049422 101049917 -126474661 + LTR19A LTR ERV1 1 486 0 26 50 0 0 chr3 101050284 101050324 -126474254 + AT_rich Low_complexity Low_complexity 1 40 0 475 287 90 12 chr3 101050480 101050647 -126473931 + MER5A DNA MER1_type 1 180 -9 1656 152 41 0 chr3 101050900 101051169 -126473409 + AluSq SINE Alu 21 300 -13 347 356 98 28 chr3 101051478 101051804 -126472774 - L3 LINE CR1 -556 1021 673 2597 174 77 40 chr3 101051806 101052379 -126472199 + LTR8 LTR ERV1 1 594 -97 265 268 0 0 chr3 101052398 101052454 -126472124 + AluYb8 SINE Alu 136 191 -117 997 119 31 83 chr3 101052528 101052721 -126471857 + LTR8A LTR ERV1 545 727 0 9862 193 62 72 chr3 101054110 101056898 -126467680 - L1M1 LINE L1 -4382 3183 17 269 358 8 22 chr3 101059097 101059231 -126465347 + MIR SINE MIR 83 214 -48 3538 165 28 0 chr3 101060957 101061575 -126463003 - L1PA16 LINE L1 -58 6108 5474 6371 183 32 27 chr3 101061587 101064513 -126460065 - L1PA10 LINE L1 -9 6159 3212 2267 116 0 0 chr3 101065409 101065719 -126458859 + AluSx SINE Alu 1 310 -2 25 0 0 0 chr3 101066599 101066624 -126457954 + AT_rich Low_complexity Low_complexity 1 25 0 1640 216 0 0 chr3 101066848 101067144 -126457434 + AluJo SINE Alu 3 298 -14 10124 225 32 29 chr3 101068744 101070332 -126454246 + L1M1 LINE L1 23 1605 -5960 558 100 0 0 chr3 101070332 101070412 -126454166 + L1PA11 LINE L1 6092 6171 -3 10124 225 32 29 chr3 101070412 101073056 -126451522 + L1M1 LINE L1 1605 4982 -2583 9875 139 19 14 chr3 101073173 101074846 -126449732 + HERVH LTR ERV1 2314 3993 -3720 4642 127 10 1 chr3 101074852 101075543 -126449035 + HERVH LTR ERV1 4453 5149 -2564 2452 151 12 5 chr3 101075534 101075958 -126448620 + HERVH LTR ERV1 5590 6016 -1697 * 3525 110 16 13 chr3 101075951 101076506 -126448072 + HERVH LTR ERV1 7157 7713 0 2021 104 71 6 chr3 101076506 101076873 -126447705 + LTR7 LTR ERV1 1 450 0 570 209 0 0 chr3 101076875 101076985 -126447593 + MLT1B LTR MaLR 281 390 0 231 130 37 19 chr3 101077243 101077297 -126447281 + T-rich Low_complexity Low_complexity 3 57 0 376 285 32 57 chr3 101077532 101077611 -126446967 - MER5B DNA MER1_type 0 178 103 477 220 101 60 chr3 101077611 101077779 -126446799 - MER5B DNA MER1_type -3 175 1 376 285 32 57 chr3 101077779 101077857 -126446721 - MER5B DNA MER1_type -75 103 25 226 65 22 22 chr3 101079610 101079656 -126444922 + (TAAAAA)n Simple_repeat Simple_repeat 2 47 0 23 0 0 0 chr3 101080373 101080396 -126444182 + AT_rich Low_complexity Low_complexity 1 23 0 229 269 221 10 chr3 101080554 101080658 -126443920 - MIR3 SINE MIR -2 206 81 1881 138 3 7 chr3 101080705 101080987 -126443591 + AluJb SINE Alu 1 281 -31 385 162 52 0 chr3 101080988 101081142 -126443436 + (TA)n Simple_repeat Simple_repeat 2 163 0 213 228 114 25 chr3 101081399 101081478 -126443100 - MIR3 SINE MIR -112 96 11 398 304 78 61 chr3 101081580 101081992 -126442586 - MLT1J1 LTR MaLR 0 446 58 26 0 0 0 chr3 101083062 101083088 -126441490 + AT_rich Low_complexity Low_complexity 1 26 0 1782 152 48 24 chr3 101083389 101083724 -126440854 + MER61A LTR ERV1 1 343 0 450 279 9 0 chr3 101084136 101084247 -126440331 - MIR SINE MIR -69 193 82 353 121 35 0 chr3 101084696 101084754 -126439824 - MLT1E2 LTR MaLR -425 201 142 209 87 22 43 chr3 101085346 101085392 -126439186 + (TTTTTG)n Simple_repeat Simple_repeat 2 46 0 1118 293 164 44 chr3 101085504 101086254 -126438324 + L2 LINE L2 2439 3278 -35 668 295 10 14 chr3 101086325 101086532 -126438046 - MIR SINE MIR 0 262 57 928 181 17 3 chr3 101087097 101087334 -126437244 - AluJb SINE Alu -4 308 1 6757 49 35 10 chr3 101087764 101089236 -126435342 + L1PA4 LINE L1 4661 6154 -1 2348 144 3 5 chr3 101089595 101089971 -126434607 - THE1C LTR MaLR 0 375 1 8106 175 69 64 chr3 101089971 101091523 -126433055 - THE1C-int LTR MaLR 0 1580 21 2600 115 5 3 chr3 101091542 101091916 -126432662 - THE1C LTR MaLR 0 375 1 1325 188 125 32 chr3 101092436 101092499 -126432079 + MLT1C LTR MaLR 1 57 -410 1953 168 21 0 chr3 101092499 101092838 -126431740 + MER7A DNA MER2_type 2 345 -1 1325 188 125 32 chr3 101092838 101093163 -126431415 + MLT1C LTR MaLR 57 467 0 329 240 82 48 chr3 101093370 101093516 -126431062 + L1MA3 LINE L1 3121 3271 -2875 1376 174 89 50 chr3 101094028 101094389 -126430189 - THE1C LTR MaLR 0 375 1 2285 205 52 14 chr3 101094389 101094887 -126429691 - MLT2B1 LTR ERVL -3 517 1 776 219 46 31 chr3 101095808 101096077 -126428501 + MER4C LTR ERV1 277 697 -2 2532 99 3 22 chr3 101096561 101096923 -126427655 - THE1A LTR MaLR 0 355 1 10912 108 13 3 chr3 101096923 101098486 -126426092 - THE1A-int LTR MaLR 0 1580 1 2018 127 7 26 chr3 101098486 101098793 -126425785 - THE1A LTR MaLR 0 355 55 7623 164 31 22 chr3 101098894 101099364 -126425214 + L1MA3 LINE L1 3803 4267 -2038 1695 24 10 19 chr3 101099364 101099573 -126425005 + AluY SINE Alu 96 302 -9 7623 164 31 22 chr3 101099573 101101582 -126422996 + L1MA3 LINE L1 4267 6305 0 1515 143 29 25 chr3 101101645 101101924 -126422654 + L1PA13 LINE L1 5882 6161 -2 27 0 9 0 chr3 101101949 101102021 -126422557 + AT_rich Low_complexity Low_complexity 1 27 0 228 253 99 22 chr3 101102287 101102378 -126422200 + L2 LINE L2 3168 3265 -7 194 298 83 36 chr3 101102747 101102831 -126421747 - MIR SINE MIR -23 239 152 302 215 128 0 chr3 101103731 101103833 -126420745 + MER61E LTR ERV1 1 85 -484 580 189 76 148 chr3 101103874 101104287 -126420291 + MER61D LTR ERV1 335 614 -12 208 173 0 19 chr3 101104417 101104469 -126420109 + (TTTG)n Simple_repeat Simple_repeat 2 52 0 1516 132 0 9 chr3 101106181 101106401 -126418177 + AluSg/x SINE Alu 76 293 -17 1773 151 46 35 chr3 101107211 101107582 -126416996 + THE1C LTR MaLR 1 375 0 10031 115 53 7 chr3 101107582 101109092 -126415486 + THE1C-int LTR MaLR 1 1580 0 1750 141 62 49 chr3 101109092 101109462 -126415116 + THE1C LTR MaLR 1 375 0 1685 203 78 45 chr3 101109838 101110325 -126414253 - MLT1D LTR MaLR 0 505 3 239 308 80 37 chr3 101110494 101110793 -126413785 + L1MCc LINE L1 1173 1484 -4939 350 268 42 14 chr3 101110939 101111081 -126413497 + L1MCc LINE L1 2364 2509 -4613 27 81 0 0 chr3 101111274 101111336 -126413242 + AT_rich Low_complexity Low_complexity 1 62 0 1799 172 7 0 chr3 101112801 101113091 -126411487 - AluSx SINE Alu -16 296 5 1715 160 191 8 chr3 101113384 101113746 -126410832 + MSTA LTR MaLR 1 428 0 180 221 0 35 chr3 101113863 101113949 -126410629 + (TA)n Simple_repeat Simple_repeat 2 84 0 7682 23 0 2 chr3 101115439 101116817 -126407761 + L1PA2 LINE L1 4780 6155 0 1258 196 24 20 chr3 101117702 101117957 -126406621 - AluJo SINE Alu -18 294 39 22 0 0 0 chr3 101118782 101118804 -126405774 + AT_rich Low_complexity Low_complexity 1 22 0 541 130 0 43 chr3 101118904 101118996 -126405582 + FRAM SINE Alu 65 152 -24 25 31 0 0 chr3 101119303 101119335 -126405243 + AT_rich Low_complexity Low_complexity 1 32 0 2216 24 0 0 chr3 101119466 101119719 -126404859 + MER11D LTR ERVK 1 253 -644 307 309 21 21 chr3 101119998 101120092 -126404486 - MIR SINE MIR -84 124 31 21 36 0 0 chr3 101120101 101120129 -126404449 + AT_rich Low_complexity Low_complexity 1 28 0 248 70 23 0 chr3 101120524 101120567 -126404011 + (TTTAA)n Simple_repeat Simple_repeat 2 45 0 2614 108 5 16 chr3 101120666 101121045 -126403533 - THE1C LTR MaLR 0 375 1 5658 184 35 14 chr3 101121317 101122634 -126401944 + L1MA8 LINE L1 4111 5399 -892 2067 119 7 99 chr3 101122634 101122861 -126401717 - THE1C LTR MaLR 0 375 201 1901 148 7 0 chr3 101122861 101123145 -126401433 + AluSx SINE Alu 3 288 -24 2067 119 7 99 chr3 101123145 101123329 -126401249 - THE1C LTR MaLR -174 201 2 9653 128 37 9 chr3 101123330 101124867 -126399711 - THE1C-int LTR MaLR 0 1580 1 2235 132 8 36 chr3 101124867 101125253 -126399325 - THE1C LTR MaLR 0 375 1 5658 184 35 14 chr3 101125253 101126067 -126398511 + L1MA8 LINE L1 5398 6289 -2 648 256 81 75 chr3 101127388 101127747 -126396831 + L1MC5 LINE L1 6689 7049 -912 700 167 8 8 chr3 101128391 101128517 -126396061 - MLT2B1 LTR ERVL -394 126 1 2660 93 0 3 chr3 101128926 101129282 -126395296 - THE1A LTR MaLR 0 355 1 11013 107 21 0 chr3 101129282 101130830 -126393748 - THE1A-int LTR MaLR 0 1580 1 2654 96 3 0 chr3 101130830 101131184 -126393394 - THE1A LTR MaLR 0 355 1 30 45 0 0 chr3 101131683 101131727 -126392851 + AT_rich Low_complexity Low_complexity 1 44 0 1325 230 82 14 chr3 101132282 101132705 -126391873 + MLT1C LTR MaLR 3 618 -8 1080 253 68 30 chr3 101132807 101133202 -126391376 - MER20B DNA MER1_type -31 752 343 22 0 0 0 chr3 101134399 101134421 -126390157 + AT_rich Low_complexity Low_complexity 1 22 0 317 319 62 11 chr3 101134612 101134822 -126389756 - MIR SINE MIR 0 262 2 202 362 43 0 chr3 101134843 101134912 -126389666 + MIR SINE MIR 16 87 -121 24 0 0 0 chr3 101136609 101136633 -126387945 + AT_rich Low_complexity Low_complexity 1 24 0 1740 164 14 0 chr3 101137032 101137324 -126387254 - AluJo SINE Alu -16 296 1 201 39 0 0 chr3 101137443 101137469 -126387109 + (TC)n Simple_repeat Simple_repeat 1 26 0 27 29 0 0 chr3 101137534 101137568 -126387010 + AT_rich Low_complexity Low_complexity 1 34 0 2479 58 0 3 chr3 101139440 101139752 -126384826 + AluY SINE Alu 1 311 0 3352 108 70 4 chr3 101139935 101140479 -126384099 + LTR19B LTR ERV1 1 580 0 1088 178 0 0 chr3 101140862 101141036 -126383542 - AluJb SINE Alu -3 309 136 25 0 0 0 chr3 101141049 101141074 -126383504 + AT_rich Low_complexity Low_complexity 1 25 0 2467 214 39 7 chr3 101141080 101141674 -126382904 - L1MB7 LINE L1 -10 6174 5562 467 167 157 0 chr3 101141679 101141781 -126382797 - AluJb SINE Alu -194 118 1 898 138 102 0 chr3 101142511 101142707 -126381871 - L1MA8 LINE L1 -2 6289 6074 22 35 0 0 chr3 101143113 101143142 -126381436 + AT_rich Low_complexity Low_complexity 1 29 0 3551 19 9 0 chr3 101144746 101145167 -126379411 + L1PA3 LINE L1 5730 6154 -1 180 125 0 0 chr3 101145173 101145205 -126379373 + (A)n Simple_repeat Simple_repeat 1 32 0 219 69 0 0 chr3 101146650 101146679 -126377899 + (TA)n Simple_repeat Simple_repeat 1 29 0 352 299 86 0 chr3 101146874 101146991 -126377587 + MER91C DNA MER1_type 1 127 -13 1938 100 92 0 chr3 101147530 101147811 -126376767 - AluY SINE Alu -4 307 1 25 0 0 0 chr3 101149341 101149366 -126375212 + AT_rich Low_complexity Low_complexity 1 25 0 497 273 81 48 chr3 101149489 101149698 -126374880 + LTR67 LTR ERVL 328 543 -14 1388 170 55 82 chr3 101151688 101151969 -126372609 - MLT1B LTR MaLR 0 390 122 2278 100 7 0 chr3 101151969 101152278 -126372300 - AluSp SINE Alu -2 311 1 1388 170 55 82 chr3 101152278 101152397 -126372181 - MLT1B LTR MaLR -268 122 1 226 262 41 98 chr3 101153088 101153210 -126371368 + L1 LINE L1 2696 2810 -3336 6234 155 67 5 chr3 101153363 101154436 -126370142 + Tigger2 DNA MER2_type 1579 2718 0 1041 217 67 15 chr3 101154454 101154916 -126369662 - L1MB7 LINE L1 -743 5403 4975 546 203 27 19 chr3 101155033 101155449 -126369129 + CT-rich Low_complexity Low_complexity 1 419 0 2553 266 49 13 chr3 101155449 101156324 -126368254 - L1MB7 LINE L1 -1194 4952 4046 1462 40 6 0 chr3 101156904 101157079 -126367499 + AluY SINE Alu 1 176 -135 2012 91 82 6 chr3 101157181 101157225 -126367353 - MER4E LTR ERV1 -423 343 304 477 0 0 0 chr3 101157225 101157278 -126367300 + (GGAA)n Simple_repeat Simple_repeat 1 53 0 2012 91 82 6 chr3 101157278 101157552 -126367026 - MER4E LTR ERV1 -462 304 1 32 43 0 0 chr3 101157681 101157727 -126366851 + AT_rich Low_complexity Low_complexity 1 46 0 240 219 47 0 chr3 101158083 101158147 -126366431 + GA-rich Low_complexity Low_complexity 1 67 0 520 285 115 52 chr3 101158631 101159266 -126365312 - L1M4 LINE L1 -1979 4167 3493 1727 207 12 48 chr3 101159296 101159712 -126364866 - MER21B LTR ERV1 -20 843 443 3693 187 6 9 chr3 101159737 101160389 -126364189 - LTR51 LTR ERV1 0 671 22 2247 193 20 18 chr3 101160389 101160829 -126363749 - MER21B LTR ERV1 -422 441 1 746 254 11 11 chr3 101160950 101161139 -126363439 - MER58C DNA MER1_type 0 215 27 1885 252 51 2 chr3 101161283 101161910 -126362668 + L1MEc LINE L1 2198 2829 -3386 24 32 0 0 chr3 101163428 101163459 -126361119 + AT_rich Low_complexity Low_complexity 1 31 0 774 341 69 9 chr3 101164125 101164674 -126359904 + L1MC4a LINE L1 5351 5932 -1876 2508 153 70 7 chr3 101164681 101165112 -126359466 - LTR24 LTR ERV1 0 467 10 23 0 0 0 chr3 101165474 101165497 -126359081 + AT_rich Low_complexity Low_complexity 1 23 0 236 122 73 0 chr3 101166185 101166226 -126358352 - LTR49 LTR ERV1 0 595 552 * 398 107 2 9 chr3 101166217 101166282 -126358296 - LTR49 LTR ERV1 -321 274 219 5159 118 25 44 chr3 101166366 101167344 -126357234 - L1PA15 LINE L1 -3 6162 5204 1843 111 4 29 chr3 101167345 101167625 -126356953 - LTR49 LTR ERV1 -322 273 1 444 304 39 48 chr3 101168629 101168941 -126355637 + L1ME3 LINE L1 4804 5112 -1034 733 132 0 0 chr3 101168963 101169077 -126355501 + MER57A LTR ERV1 8 121 -282 1483 179 50 20 chr3 101169107 101169287 -126355291 + MER57A LTR ERV1 94 288 -115 2229 104 0 7 chr3 101169287 101169586 -126354992 + AluSg SINE Alu 1 297 -13 1483 179 50 20 chr3 101169586 101169706 -126354872 + MER57A LTR ERV1 288 403 0 541 266 35 15 chr3 101169710 101169913 -126354665 + L1ME3 LINE L1 5133 5339 -807 1452 243 86 72 chr3 101169930 101170939 -126353639 + L1ME3 LINE L1 4836 5866 -296 3343 167 142 4 chr3 101170939 101171665 -126352913 + LTR1B LTR ERV1 1 826 0 1452 243 86 72 chr3 101171665 101171890 -126352688 + L1ME3 LINE L1 5866 6086 -76 30 45 0 0 chr3 101171946 101171990 -126352588 + AT_rich Low_complexity Low_complexity 1 44 0 27 62 0 0 chr3 101172272 101172320 -126352258 + AT_rich Low_complexity Low_complexity 1 48 0 228 313 80 9 chr3 101172635 101172747 -126351831 + MIR3 SINE MIR 37 156 -52 2000 118 0 21 chr3 101174118 101174407 -126350171 - AluSx SINE Alu -29 283 1 232 227 45 15 chr3 101175516 101175582 -126348996 - MIR3 SINE MIR -21 187 120 22 35 0 0 chr3 101175670 101175699 -126348879 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr3 101176066 101176094 -126348484 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr3 101176135 101176161 -126348417 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 101176192 101176213 -126348365 + AT_rich Low_complexity Low_complexity 1 21 0 2174 92 0 0 chr3 101176624 101176907 -126347671 + AluSq SINE Alu 17 299 -14 1787 214 33 28 chr3 101177261 101177718 -126346860 + L1ME3 LINE L1 5516 5974 -188 1899 168 0 7 chr3 101178212 101178521 -126346057 - AluJo SINE Alu -3 309 3 1969 147 0 26 chr3 101179105 101179412 -126345166 - AluJb SINE Alu -13 299 1 11638 108 13 25 chr3 101179545 101181361 -126343217 + HERVH LTR ERV1 1000 2793 -4920 404 172 92 0 chr3 101281470 101281557 -126243021 + MER4A LTR ERV1 4 98 -566 1835 133 0 73 chr3 101281599 101281915 -126242663 + MER4A LTR ERV1 372 664 0 2161 215 12 30 chr3 101282522 101283462 -126241116 + L1MA7 LINE L1 4543 5435 -743 2270 90 20 0 chr3 101283730 101284029 -126240549 - AluSc SINE Alu -4 305 1 1536 294 122 25 chr3 101284798 101285534 -126239044 - L2 LINE L2 -624 2690 1883 570 335 19 19 chr3 101285563 101285730 -126238848 + L1MC4a LINE L1 5616 5785 -2023 1331 189 55 24 chr3 101285730 101286058 -126238520 + MER44D DNA MER2_type 2 609 0 570 335 19 19 chr3 101286058 101286197 -126238381 + L1MC4a LINE L1 5784 5922 -1886 3827 189 16 19 chr3 101286374 101286935 -126237643 + L1MA7 LINE L1 5466 6025 -266 2378 82 3 0 chr3 101286935 101287240 -126237338 + AluY SINE Alu 1 306 -5 3827 189 16 19 chr3 101287240 101287497 -126237081 + L1MA7 LINE L1 6025 6281 -10 3959 183 65 21 chr3 101287516 101288465 -126236113 + L1MB8 LINE L1 5198 6173 -5 192 252 219 17 chr3 101288730 101288849 -126235729 + MIR SINE MIR 12 154 -108 27 0 0 0 chr3 101289113 101289140 -126235438 + AT_rich Low_complexity Low_complexity 1 27 0 321 329 160 19 chr3 101289923 101290236 -126234342 + HAL1 LINE L1 535 891 -1616 235 319 111 22 chr3 101290410 101290545 -126234033 - L2 LINE L2 -3 3269 3123 24 0 0 0 chr3 101290742 101290766 -126233812 + AT_rich Low_complexity Low_complexity 1 24 0 4182 206 57 19 chr3 101292600 101293349 -126231229 + L1PA11 LINE L1 5395 6172 -2 38 39 0 0 chr3 101293349 101293401 -126231177 + AT_rich Low_complexity Low_complexity 1 52 0 25 0 0 0 chr3 101293548 101293573 -126231005 + AT_rich Low_complexity Low_complexity 1 25 0 207 288 76 0 chr3 101295209 101295275 -126229303 - MIR SINE MIR -8 254 184 369 0 0 0 chr3 101295524 101295565 -126229013 + (TAAA)n Simple_repeat Simple_repeat 2 42 0 320 297 9 18 chr3 101296245 101296356 -126228222 + GA-rich Low_complexity Low_complexity 2 111 0 1956 137 20 0 chr3 101298720 101299020 -126225558 - AluSc SINE Alu -3 306 1 378 259 70 121 chr3 101299548 101299977 -126224601 + L2 LINE L2 1699 2105 -1209 794 268 92 37 chr3 101300332 101300791 -126223787 + MER113 DNA MER1_type? 19 502 -19 260 336 100 41 chr3 101301106 101301445 -126223133 + L2 LINE L2 2605 2963 -351 728 201 23 20 chr3 101301732 101302065 -126222513 + CT-rich Low_complexity Low_complexity 1 334 0 1495 214 0 26 chr3 101302080 101302393 -126222185 - AluJo SINE Alu -7 305 1 227 260 104 42 chr3 101303456 101303552 -126221026 - MIR SINE MIR -112 150 49 23 54 0 0 chr3 101303823 101303860 -126220718 + AT_rich Low_complexity Low_complexity 1 37 0 620 221 15 0 chr3 101303860 101303991 -126220587 + FLAM_A SINE Alu 1 133 0 343 297 111 77 chr3 101304158 101304972 -126219606 - L1M4 LINE L1 -816 5330 4490 974 131 27 16 chr3 101305058 101305241 -126219337 - L1MA4A LINE L1 0 6303 6119 1024 114 13 0 chr3 101305241 101305387 -126219191 + L1PA10 LINE L1 6017 6167 -1 682 159 2 0 chr3 101305387 101305513 -126219065 - L1MA4A LINE L1 -174 6129 6003 1305 72 72 0 chr3 101305653 101305833 -126218745 + AluSc SINE Alu 99 291 -18 508 295 153 7 chr3 101305839 101306120 -126218458 + L2 LINE L2 2219 2540 -774 284 236 169 45 chr3 101306202 101306380 -126218198 + L2 LINE L2 3114 3313 0 212 399 58 5 chr3 101307229 101307417 -126217161 + L2 LINE L2 2379 2576 -738 330 288 46 103 chr3 101307606 101307851 -126216727 + MIR SINE MIR 18 256 -6 1842 151 0 0 chr3 101308578 101308877 -126215701 - AluJb SINE Alu 0 307 9 1389 116 10 0 chr3 101308898 101309105 -126215473 - L1PA8A LINE L1 0 6131 5923 214 293 69 0 chr3 101312751 101312809 -126211769 + L2 LINE L2 3201 3262 -51 2361 60 0 0 chr3 101313105 101313421 -126211157 - AluY SINE Alu 0 316 1 582 225 34 28 chr3 101313484 101313662 -126210916 + LTR37B LTR ERV1 280 458 -10 202 180 60 20 chr3 101313667 101313717 -126210861 - MIR SINE MIR -71 191 140 290 262 278 8 chr3 101313742 101313868 -126210710 - MIR SINE MIR -99 163 4 2390 77 3 3 chr3 101314073 101314385 -126210193 - AluSx SINE Alu 0 312 1 3171 134 47 2 chr3 101315259 101315788 -126208790 - L1MA4A LINE L1 -338 5965 5413 11774 190 32 5 chr3 101315789 101318330 -126206248 - L1MA4A LINE L1 -812 5334 2726 870 254 10 5 chr3 101320903 101321100 -126203478 + MER63A DNA MER1_type 2 199 -11 1615 146 114 20 chr3 101321102 101321445 -126203133 + THE1C LTR MaLR 1 375 0 8588 127 84 10 chr3 101321445 101322852 -126201726 + THE1C-int LTR MaLR 1 1511 -69 186 328 127 30 chr3 101323553 101323687 -126200891 - MIR SINE MIR -37 225 79 358 346 59 20 chr3 101324209 101324411 -126200167 + L2 LINE L2 1864 2073 -1241 254 333 0 0 chr3 101324915 101324996 -126199582 + MIR SINE MIR 73 153 -109 5518 155 47 18 chr3 101325467 101326424 -126198154 + THE1C-int LTR MaLR 596 1580 0 1417 139 84 102 chr3 101326424 101326806 -126197772 + THE1C LTR MaLR 1 375 0 181 333 67 0 chr3 101327000 101327060 -126197518 + MIR SINE MIR 51 114 -148 1737 122 102 3 chr3 101327076 101327411 -126197167 - L1MA8 LINE L1 -1 6290 5923 290 167 37 0 chr3 101329959 101330013 -126194565 + MER96 DNA MER1_type? 29 84 -91 * 318 200 17 0 chr3 101330003 101330063 -126194515 - MER96 DNA MER1_type? -109 66 6 2765 3 0 0 chr3 101331544 101331844 -126192734 - AluYa5 SINE Alu -11 300 1 33 0 0 0 chr3 101332068 101332101 -126192477 + AT_rich Low_complexity Low_complexity 1 33 0 219 346 15 45 chr3 101334222 101334355 -126190223 + MIR SINE MIR 53 181 -81 25 31 0 0 chr3 101334521 101334553 -126190025 + AT_rich Low_complexity Low_complexity 1 32 0 310 326 30 15 chr3 101334748 101334883 -126189695 + L2 LINE L2 2065 2201 -1113 1005 143 0 30 chr3 101334884 101335128 -126189450 - AluJb SINE Alu -12 300 21 231 188 0 0 chr3 101335285 101335333 -126189245 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 1720 202 9 3 chr3 101335654 101335976 -126188602 + MER58B DNA MER1_type 1 324 -17 294 173 0 0 chr3 101336206 101336258 -126188320 - MER45 DNA AcHobo 0 1581 1530 472 204 0 0 chr3 101336343 101336431 -126188147 - MER45 DNA AcHobo -819 134 47 27 87 0 0 chr3 101337889 101337958 -126186620 + AT_rich Low_complexity Low_complexity 1 69 0 614 279 164 36 chr3 101338156 101338436 -126186142 - MLT1K LTR MaLR -15 573 258 27 29 0 0 chr3 101338684 101338718 -126185860 + AT_rich Low_complexity Low_complexity 1 34 0 676 244 28 28 chr3 101339388 101339601 -126184977 - L1MD2 LINE L1 -340 6019 5807 3192 191 43 22 chr3 101339850 101340007 -126184571 - L1 LINE L1 -808 5338 5186 232 25 75 0 chr3 101340007 101340047 -126184531 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3192 191 43 22 chr3 101340047 101340613 -126183965 - L1 LINE L1 -960 5186 4600 3148 144 31 24 chr3 101340620 101341162 -126183416 - L1PA16 LINE L1 -1 6165 5620 698 186 0 0 chr3 101341162 101341302 -126183276 - L1MA7 LINE L1 -788 5358 5219 * 4010 183 47 47 chr3 101341290 101342246 -126182332 + L1MA7 LINE L1 5336 6291 0 28 48 0 0 chr3 101342271 101342313 -126182265 + AT_rich Low_complexity Low_complexity 1 42 0 2374 105 0 0 chr3 101342629 101342942 -126181636 + AluSq SINE Alu 1 313 0 2169 108 0 10 chr3 101343166 101343473 -126181105 - AluSg1 SINE Alu -5 304 1 21 0 0 0 chr3 101344328 101344349 -126180229 + AT_rich Low_complexity Low_complexity 1 21 0 7610 25 0 6 chr3 101344538 101346008 -126178570 - L1PA3 LINE L1 0 6155 4692 6157 20 0 0 chr3 101346010 101346726 -126177852 + L1P LINE L1 3904 4619 -1527 193 349 152 0 chr3 101346912 101346978 -126177600 + L2 LINE L2 3147 3222 -50 417 274 79 18 chr3 101347000 101347164 -126177414 - L2 LINE L2 -15 3298 3125 2156 101 0 14 chr3 101347164 101347460 -126177118 + AluSx SINE Alu 1 292 -20 209 333 11 11 chr3 101347518 101347608 -126176970 - MIR SINE MIR -120 142 53 210 37 0 0 chr3 101347608 101347635 -126176943 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 26 0 0 0 chr3 101347935 101347961 -126176617 + AT_rich Low_complexity Low_complexity 1 26 0 435 264 121 62 chr3 101348068 101348380 -126176198 + L1ME4a LINE L1 5318 5645 -476 5357 154 49 20 chr3 101348407 101349518 -126175060 - L1MA4A LINE L1 0 6303 5156 10231 31 3 0 chr3 101349640 101351627 -126172951 + L1PA4 LINE L1 4160 6149 -6 32 91 0 0 chr3 101351645 101351733 -126172845 + AT_rich Low_complexity Low_complexity 1 88 0 225 246 71 48 chr3 101351825 101351951 -126172627 + L1ME4a LINE L1 5960 6088 -33 185 91 121 0 chr3 101352332 101352365 -126172213 + L2 LINE L2 1383 1419 -1895 300 285 85 12 chr3 101352510 101352675 -126171903 - L1ME4a LINE L1 -201 5920 5744 396 148 0 0 chr3 101352854 101352915 -126171663 - MER75B DNA T2_type -182 61 1 420 286 105 20 chr3 101352998 101353246 -126171332 - L1M3 LINE L1 -629 5551 5283 322 302 90 47 chr3 101353419 101353599 -126170979 - L1M3 LINE L1 -1144 5002 4810 674 35 0 0 chr3 101353599 101353685 -126170893 - L1PA4 LINE L1 -4 6151 6066 322 302 90 47 chr3 101353685 101353716 -126170862 - L1M3 LINE L1 -1336 4810 4782 5841 88 23 9 chr3 101354122 101354992 -126169586 - L1PA13 LINE L1 -45 6118 5237 399 316 87 58 chr3 101355002 101355448 -126169130 - L1M3 LINE L1 -2580 3566 3108 186 43 0 0 chr3 101355931 101355954 -126168624 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2430 222 34 16 chr3 101356628 101357324 -126167254 + Tigger7 DNA MER2_type 1 2582 -5 443 150 38 0 chr3 101357383 101357463 -126167115 + L1MC1 LINE L1 6247 6329 -4 34 0 0 0 chr3 101358099 101358133 -126166445 + AT_rich Low_complexity Low_complexity 1 34 0 1444 119 57 0 chr3 101358586 101358813 -126165765 - L1MC1 LINE L1 0 6333 6094 579 167 10 0 chr3 101358817 101358913 -126165665 - MLT1D LTR MaLR -404 101 5 1845 150 3 0 chr3 101361439 101361726 -126162852 + AluSx SINE Alu 1 288 -24 21 0 0 0 chr3 101361916 101361937 -126162641 + AT_rich Low_complexity Low_complexity 1 21 0 194 265 132 0 chr3 101362147 101362215 -126162363 - L3b LINE CR1 -175 1408 1332 1164 260 83 18 chr3 101362364 101362864 -126161714 - L1MEc LINE L1 -864 2037 1913 534 323 5 16 chr3 101363049 101363238 -126161340 - MLT1-int LTR MaLR -484 887 701 267 319 0 11 chr3 101363224 101363315 -126161263 - L1MEc LINE L1 -4704 1836 1747 * 1875 144 3 7 chr3 101363369 101363679 -126160899 - AluSx SINE Alu 0 309 1 1302 232 25 9 chr3 101363857 101364336 -126160242 - MLT1D-int LTR MaLR -769 602 1 1526 232 48 48 chr3 101364336 101364841 -126159737 - MLT1D LTR MaLR 0 505 1 1264 258 29 64 chr3 101364855 101365177 -126159401 - L1MEc LINE L1 -5561 969 668 2132 123 13 0 chr3 101365177 101365485 -126159093 + AluSx SINE Alu 1 312 0 1264 258 29 64 chr3 101365485 101365647 -126158931 - L1MEc LINE L1 -5862 668 502 2040 238 31 65 chr3 101365865 101366563 -126158015 - L1ME3A LINE L1 -8 6162 5488 375 23 0 0 chr3 101367365 101367409 -126157169 + (TG)n Simple_repeat Simple_repeat 2 45 0 183 129 0 0 chr3 101367896 101367927 -126156651 + (TC)n Simple_repeat Simple_repeat 1 31 0 28 48 0 0 chr3 101369151 101369193 -126155385 + AT_rich Low_complexity Low_complexity 1 42 0 1095 252 174 22 chr3 101369886 101369923 -126154655 - MLT2B1 LTR ERVL -4 516 486 1036 15 15 0 chr3 101369923 101370053 -126154525 + (TAGA)n Simple_repeat Simple_repeat 3 134 0 1095 252 174 22 chr3 101370053 101370463 -126154115 - MLT2B1 LTR ERVL -34 486 1 232 219 0 0 chr3 101370656 101370697 -126153881 - L2 LINE L2 -14 3258 3218 472 309 43 47 chr3 101370949 101371286 -126153292 + L1M3d LINE L1 505 1098 -5205 2233 253 35 25 chr3 101371430 101372324 -126152254 + L1MB2 LINE L1 778 1784 -4519 * 11625 191 15 55 chr3 101372307 101373593 -126150985 + L1MB2 LINE L1 2703 4039 -2368 2073 235 19 58 chr3 101373593 101373641 -126150937 - MLT2B3 LTR ERVL -2 552 504 354 98 0 0 chr3 101373641 101373692 -126150886 + (CA)n Simple_repeat Simple_repeat 2 52 0 2073 235 19 58 chr3 101373692 101374217 -126150361 - MLT2B3 LTR ERVL -50 504 1 11625 191 15 55 chr3 101374217 101375729 -126148849 + L1MB2 LINE L1 4039 5610 -797 2071 122 7 3 chr3 101375729 101376032 -126148546 + AluSx SINE Alu 1 304 -8 11625 191 15 55 chr3 101376032 101376203 -126148375 + L1MB2 LINE L1 5610 5786 -621 2405 81 0 0 chr3 101376203 101376501 -126148077 + AluY SINE Alu 1 298 -13 11625 191 15 55 chr3 101376501 101377341 -126147237 + L1MB2 LINE L1 5786 6327 -80 337 105 0 181 chr3 101377440 101377545 -126147033 + L1MB2 LINE L1 6321 6406 -1 251 371 59 24 chr3 101377733 101377903 -126146675 + MIR SINE MIR 70 245 -17 480 305 68 30 chr3 101378072 101378308 -126146270 - MIR SINE MIR -17 245 1 206 32 32 0 chr3 101379224 101379255 -126145323 + (CA)n Simple_repeat Simple_repeat 1 32 0 802 251 28 45 chr3 101380606 101380897 -126143681 + L1ME2 LINE L1 5870 6155 -9 321 47 0 0 chr3 101381190 101381233 -126143345 + (TG)n Simple_repeat Simple_repeat 2 44 0 37487 82 10 16 chr3 101381515 101382082 -126142496 + L1PA6 LINE L1 11 580 -5587 7463 26 6 1 chr3 101382082 101383422 -126141156 + L1PA3 LINE L1 4808 6152 -3 37487 82 10 16 chr3 101383422 101389053 -126135525 + L1PA6 LINE L1 580 6167 0 511 286 19 7 chr3 101389262 101389416 -126135162 + MIR SINE MIR 99 254 -8 2484 129 43 12 chr3 101389452 101389871 -126134707 + MSTB1 LTR MaLR 1 432 0 776 216 90 68 chr3 101390994 101391279 -126133299 + L1MD3 LINE L1 7035 7537 -458 2349 86 3 0 chr3 101391399 101391701 -126132877 - AluSx SINE Alu -9 303 1 21 71 0 0 chr3 101391755 101391797 -126132781 + AT_rich Low_complexity Low_complexity 1 42 0 285 297 181 7 chr3 101393073 101393211 -126131367 + MIR SINE MIR 100 261 -1 26 0 0 0 chr3 101393958 101393984 -126130594 + AT_rich Low_complexity Low_complexity 1 26 0 1452 103 8 65 chr3 101394578 101394839 -126129739 - L1PB1 LINE L1 0 6151 5906 1797 157 0 4 chr3 101394839 101395120 -126129458 - AluSx SINE Alu -32 280 1 446 48 0 0 chr3 101395122 101395185 -126129393 - AluY SINE Alu -4 306 244 775 279 54 17 chr3 101395202 101395442 -126129136 + MIR SINE MIR 11 259 -3 207 289 82 21 chr3 101395447 101395544 -126129034 + MIR SINE MIR 160 262 0 293 306 252 0 chr3 101395665 101395812 -126128766 + MIR SINE MIR 20 203 -59 533 81 41 2 chr3 101395866 101395956 -126128622 + L1M LINE L1 5304 5397 -771 253 230 40 0 chr3 101395956 101396030 -126128548 + (TA)n Simple_repeat Simple_repeat 2 78 0 188 161 0 0 chr3 101396909 101396940 -126127638 - L2 LINE L2 -24 3248 3218 3063 179 21 50 chr3 101397062 101397966 -126126612 + L1MA9 LINE L1 5071 5947 -365 195 209 0 0 chr3 101398523 101398566 -126126012 + L2 LINE L2 3266 3308 -5 344 284 20 0 chr3 101398572 101398674 -126125904 + (TGGA)n Simple_repeat Simple_repeat 3 106 0 384 282 18 9 chr3 101398815 101398925 -126125653 - MIR3 SINE MIR -1 207 97 22 94 0 0 chr3 101399130 101399194 -126125384 + AT_rich Low_complexity Low_complexity 1 64 0 2009 110 17 7 chr3 101400148 101400449 -126124129 + AluSx SINE Alu 1 304 -8 266 335 38 43 chr3 101400462 101400647 -126123931 - L2 LINE L2 -52 3261 3078 1808 287 125 17 chr3 101400652 101401603 -126122975 - L2 LINE L2 -134 3179 2120 1438 196 29 3 chr3 101401784 101402090 -126122488 + MLT1B LTR MaLR 45 358 -32 869 290 109 38 chr3 101402408 101403142 -126121436 + L1ME3A LINE L1 4388 5173 -973 2644 26 0 0 chr3 101403165 101403473 -126121105 - L1PA3 LINE L1 -3 6152 5845 5211 22 3 0 chr3 101403473 101404470 -126120108 + L1P1 LINE L1 4775 5774 -381 1823 264 50 15 chr3 101404503 101405151 -126119427 + L1ME3A LINE L1 5198 5863 -307 1035 255 49 62 chr3 101405147 101405579 -126118999 + L1ME3A LINE L1 5736 6161 -9 * 1660 181 0 35 chr3 101405595 101405910 -126118668 + AluJo SINE Alu 6 309 -3 369 287 35 46 chr3 101406468 101406642 -126117936 + L1ME3A LINE L1 5965 6136 -34 22 0 0 0 chr3 101407080 101407102 -126117476 + AT_rich Low_complexity Low_complexity 1 22 0 6149 87 22 5 chr3 101407109 101408013 -126116565 - L1PB1 LINE L1 0 6151 5233 344 218 19 77 chr3 101408472 101408628 -126115950 + L1ME LINE L1 5538 5684 -437 185 279 0 0 chr3 101409255 101409298 -126115280 + L2 LINE L2 3230 3272 0 475 248 26 8 chr3 101409779 101409896 -126114682 + MLT1I LTR MaLR 275 393 -16 440 309 35 66 chr3 101410169 101410486 -126114092 - MLT1J LTR MaLR -10 501 195 14053 184 25 10 chr3 101410915 101414420 -126110158 + L1PA13 LINE L1 2354 5911 -252 14440 183 28 13 chr3 101414426 101420584 -126103994 + L1PB1 LINE L1 6 6514 -353 223 28 56 0 chr3 101420584 101420620 -126103958 + (TA)n Simple_repeat Simple_repeat 2 39 0 14440 183 28 13 chr3 101420620 101420980 -126103598 + L1PB1 LINE L1 6514 6867 0 1409 161 11 4 chr3 101421192 101421452 -126103126 + L1PA13 LINE L1 5891 6152 -11 4717 202 72 38 chr3 101422008 101424849 -126099729 - L1MA5 LINE L1 -5 7357 4428 3340 179 61 27 chr3 101424852 101425636 -126098942 - L1MA5 LINE L1 -3976 3233 2423 470 282 127 38 chr3 101425640 101425931 -126098647 - L1MA5 LINE L1 -5352 1857 1541 1477 292 59 31 chr3 101425965 101426594 -126097984 - L1MA5 LINE L1 -6574 635 3 349 339 34 0 chr3 101428291 101428409 -126096169 - L2 LINE L2 0 3272 3151 2191 125 3 0 chr3 101428617 101428914 -126095664 - AluSx SINE Alu -14 298 1 265 254 0 0 chr3 101429980 101430035 -126094543 + MIR SINE MIR 62 116 -146 6761 171 14 2 chr3 101430067 101431282 -126093296 - L1P LINE L1 -1191 4955 3726 346 253 50 30 chr3 101431282 101431381 -126093197 + MIR SINE MIR 162 262 0 221 255 0 0 chr3 101431391 101431442 -126093136 + (CATATA)n Simple_repeat Simple_repeat 3 53 0 183 80 0 0 chr3 101431591 101431616 -126092962 + (T)n Simple_repeat Simple_repeat 1 25 0 7331 36 5 0 chr3 101431621 101433181 -126091397 - L1PA3 LINE L1 0 6155 4587 9944 34 0 0 chr3 101433183 101434376 -126090202 + L1PA3 LINE L1 3400 4592 -1554 233 342 51 0 chr3 101435175 101435292 -126089286 + LTR16A1 LTR ERVL 334 456 -1 201 374 88 11 chr3 101435343 101435434 -126089144 - MIR SINE MIR -148 114 17 1729 179 0 7 chr3 101435436 101435727 -126088851 - AluJb SINE Alu -13 299 11 2226 103 3 0 chr3 101436428 101436719 -126087859 - AluSx SINE Alu -20 292 1 32 57 0 0 chr3 101437061 101437114 -126087464 + AT_rich Low_complexity Low_complexity 1 53 0 22 0 0 0 chr3 101437191 101437213 -126087365 + AT_rich Low_complexity Low_complexity 1 22 0 10054 170 21 11 chr3 101437408 101438210 -126086368 + L1P LINE L1 3351 4143 -2003 2333 99 0 3 chr3 101438210 101438522 -126086056 + AluY SINE Alu 1 311 0 10054 170 21 11 chr3 101438522 101439677 -126084901 + L1P LINE L1 4143 5328 -818 7890 101 10 3 chr3 101439672 101440846 -126083732 - L1P LINE L1 -2225 3921 2739 * 3170 95 56 0 chr3 101440880 101441362 -126083216 + L1P LINE L1 4302 4810 -1336 318 26 0 0 chr3 101441362 101441401 -126083177 - HERV17 LTR ERV1 -1686 6940 6902 * 41137 47 15 3 chr3 101441392 101445586 -126078992 - HERV17 LTR ERV1 -3559 5067 803 198 0 0 0 chr3 101445586 101445608 -126078970 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 41137 47 15 3 chr3 101445608 101446421 -126078157 - HERV17 LTR ERV1 -7823 803 1 4140 51 2 6 chr3 101446421 101446948 -126077630 - LTR17 LTR ERV1 0 780 256 24 32 0 0 chr3 101446950 101446981 -126077597 + AT_rich Low_complexity Low_complexity 1 31 0 236 243 14 14 chr3 101447130 101447194 -126077384 + (TA)n Simple_repeat Simple_repeat 2 68 -7 2147 107 7 13 chr3 101447194 101447492 -126077086 - AluY SINE Alu -15 296 1 236 243 14 14 chr3 101447492 101447501 -126077077 + (TA)n Simple_repeat Simple_repeat 67 75 0 313 277 59 17 chr3 101448232 101448351 -126076227 + MIR SINE MIR 135 258 -4 1543 184 24 14 chr3 101449059 101449347 -126075231 - AluJb SINE Alu -19 293 3 2071 201 24 24 chr3 101450421 101450878 -126073700 - MSTB2 LTR MaLR 0 457 1 275 244 73 24 chr3 101451487 101451610 -126072968 - MER65B LTR ERV1 -402 129 1 408 324 50 0 chr3 101451857 101451996 -126072582 - MIR SINE MIR -13 249 104 3285 139 27 38 chr3 101452057 101452659 -126071919 - L1MC1 LINE L1 -2 6331 5737 22 0 0 0 chr3 101452813 101452835 -126071743 + AT_rich Low_complexity Low_complexity 1 22 0 404 237 44 9 chr3 101453004 101453118 -126071460 + MIR SINE MIR 106 223 -39 22 35 0 0 chr3 101453291 101453320 -126071258 + AT_rich Low_complexity Low_complexity 1 29 0 258 271 59 0 chr3 101453446 101453531 -126071047 + HAL1 LINE L1 1634 1723 -784 5472 161 29 14 chr3 101453586 101454912 -126069666 + L1MA4A LINE L1 4963 6298 -5 5472 249 82 26 chr3 101455623 101458868 -126065710 - L1ME1 LINE L1 -5 6161 2572 200 33 0 33 chr3 101458872 101458902 -126065676 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 241 250 125 0 chr3 101459020 101459100 -126065478 + MIR SINE MIR 167 256 -6 272 372 112 23 chr3 101459146 101459619 -126064959 + L2 LINE L2 1854 2368 -946 193 320 78 10 chr3 101459785 101459888 -126064690 + MIR SINE MIR 109 218 -44 718 233 23 11 chr3 101460619 101460795 -126063783 + MER5B DNA MER1_type 1 178 0 331 244 142 89 chr3 101461055 101461280 -126063298 + MIR SINE MIR 20 256 -6 231 36 0 0 chr3 101461573 101461601 -126062977 + (CA)n Simple_repeat Simple_repeat 1 28 0 405 273 79 0 chr3 101461612 101461751 -126062827 - MER103 DNA DNA -9 157 8 655 190 9 0 chr3 101462051 101462167 -126062411 + FLAM_C SINE Alu 2 118 -15 800 147 79 17 chr3 101462432 101462609 -126061969 - MER53 DNA DNA 0 189 2 22 35 0 0 chr3 101463376 101463405 -126061173 + AT_rich Low_complexity Low_complexity 1 29 0 2320 113 34 8 chr3 101465357 101465712 -126058866 + THE1B LTR MaLR 1 364 0 1718 186 46 9 chr3 101466578 101466928 -126057650 - MLT1A1 LTR MaLR -2 363 1 2174 120 7 0 chr3 101467732 101468024 -126056554 + AluSx SINE Alu 1 294 -18 2178 103 53 36 chr3 101468055 101468413 -126056165 + THE1B LTR MaLR 1 364 0 10959 102 6 35 chr3 101468413 101468780 -126055798 + THE1B-int LTR MaLR 1 377 -1203 2250 108 3 0 chr3 101468780 101469076 -126055502 - AluSq SINE Alu -16 297 1 10959 102 6 35 chr3 101469076 101470336 -126054242 + THE1B-int LTR MaLR 377 1580 0 2318 105 45 14 chr3 101470336 101470689 -126053889 + THE1B LTR MaLR 1 364 0 190 270 79 79 chr3 101470728 101470818 -126053760 - L2 LINE L2 -276 3037 2945 730 227 43 22 chr3 101470818 101471003 -126053575 - MER5A DNA MER1_type 0 189 1 190 270 79 79 chr3 101471003 101471038 -126053540 - L2 LINE L2 -367 2946 2912 1714 168 33 0 chr3 101471850 101472145 -126052433 + AluJb SINE Alu 1 304 0 307 281 238 0 chr3 101472279 101472464 -126052114 - L1MC4a LINE L1 -1837 5971 5743 330 263 178 17 chr3 101472634 101472752 -126051826 - L2 LINE L2 -1 3312 3176 1980 100 38 38 chr3 101473453 101473744 -126050834 + AluSq SINE Alu 1 291 -22 22 70 0 0 chr3 101475586 101475629 -126048949 + AT_rich Low_complexity Low_complexity 1 43 0 448 194 223 10 chr3 101476969 101477072 -126047506 + FLAM_A SINE Alu 1 125 -8 21 57 0 0 chr3 101477164 101477199 -126047379 + AT_rich Low_complexity Low_complexity 1 35 0 249 228 159 101 chr3 101477840 101477958 -126046620 - MIR SINE MIR 0 262 127 2293 62 3 74 chr3 101477958 101478281 -126046297 - AluY SINE Alu -7 304 5 249 228 159 101 chr3 101478281 101478351 -126046227 - MIR SINE MIR -135 127 63 4220 177 66 72 chr3 101478380 101479335 -126045243 - MER52A LTR ERV1 0 1755 807 427 111 97 0 chr3 101479348 101479420 -126045158 - MER52A-int LTR ERV1 -6650 441 363 582 75 0 0 chr3 101479420 101479500 -126045078 + (GGAA)n Simple_repeat Simple_repeat 1 80 0 388 107 18 0 chr3 101479509 101479565 -126045013 - MER52A-int LTR ERV1 -6671 420 364 288 77 0 0 chr3 101479566 101479605 -126044973 + (GGGA)n Simple_repeat Simple_repeat 1 39 0 2920 136 19 0 chr3 101479853 101480286 -126044292 - MER52A-int LTR ERV1 -6650 441 1 7020 229 37 32 chr3 101480286 101481975 -126042603 - MER52A LTR ERV1 0 1755 1 2022 148 3 3 chr3 101482007 101482312 -126042266 - AluSx SINE Alu -7 305 1 1641 172 38 0 chr3 101482749 101483040 -126041538 - AluSx SINE Alu -10 302 1 247 262 93 93 chr3 101483586 101483876 -126040702 + MLT-int LTR MaLR 1437 1726 -9 224 54 54 0 chr3 101485184 101485221 -126039357 + T-rich Low_complexity Low_complexity 5 43 0 1792 152 22 29 chr3 101485260 101485575 -126039003 - AluSq SINE Alu 0 313 1 2255 98 3 3 chr3 101485871 101486177 -126038401 + AluSp SINE Alu 1 306 -7 682 233 25 40 chr3 101486268 101486470 -126038108 + MIR SINE MIR 64 262 0 2032 129 0 3 chr3 101487640 101487963 -126036615 + AluSx SINE Alu 1 322 0 598 98 67 0 chr3 101488433 101488689 -126035889 + (TA)n Simple_repeat Simple_repeat 1 273 0 840 176 18 29 chr3 101488874 101489044 -126035534 + MER5A DNA MER1_type 21 188 -1 1738 124 52 48 chr3 101489378 101489694 -126034884 - AluSx SINE Alu 0 312 3 21 57 0 0 chr3 101489763 101489798 -126034780 + AT_rich Low_complexity Low_complexity 1 35 0 25 65 0 0 chr3 101490488 101490534 -126034044 + AT_rich Low_complexity Low_complexity 1 46 0 4504 81 56 6 chr3 101490566 101491195 -126033383 - PABL_A LTR ERV1 0 660 1 22 70 0 0 chr3 101493054 101493097 -126031481 + AT_rich Low_complexity Low_complexity 1 43 0 221 391 23 39 chr3 101494082 101494210 -126030368 - L2 LINE L2 -8 3264 3139 237 325 25 0 chr3 101494723 101494803 -126029775 - L2 LINE L2 -679 2635 2554 21 0 0 0 chr3 101494845 101494866 -126029712 + AT_rich Low_complexity Low_complexity 1 21 0 1738 179 14 0 chr3 101495630 101495920 -126028658 - AluJb SINE Alu -18 294 1 1655 181 0 30 chr3 101495922 101496226 -126028352 - AluJo SINE Alu -17 295 1 21 57 0 0 chr3 101499538 101499573 -126025005 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 101501243 101501265 -126023313 + AT_rich Low_complexity Low_complexity 1 22 0 306 288 61 56 chr3 101502528 101502726 -126021852 - L1MEd LINE L1 -4876 1243 1045 600 282 87 88 chr3 101502759 101502987 -126021591 - L1MEd LINE L1 -5159 960 733 2299 92 6 22 chr3 101502987 101503304 -126021274 - AluSx SINE Alu 0 312 1 600 282 87 88 chr3 101503304 101503767 -126020811 - L1MEd LINE L1 -5386 733 270 329 331 47 16 chr3 101505528 101505655 -126018923 + L2 LINE L2 3182 3312 -1 1321 202 13 29 chr3 101506333 101506640 -126017938 - Charlie1 DNA MER1_type -816 1945 1644 1984 152 0 16 chr3 101507181 101507491 -126017087 + AluSx SINE Alu 1 305 -7 343 286 90 8 chr3 101507621 101507754 -126016824 + L2 LINE L2 2981 3124 -189 1910 287 82 28 chr3 101507791 101508680 -126015898 + L1MEc LINE L1 499 1435 -4961 183 227 0 23 chr3 101508708 101508752 -126015826 - MIR SINE MIR -97 165 123 997 167 6 0 chr3 101509013 101509187 -126015391 - L1PA14 LINE L1 -14 6147 5973 3676 150 0 7 chr3 101509187 101510147 -126014431 + L1P4 LINE L1 4680 5631 -530 278 263 0 0 chr3 101510160 101510217 -126014361 + MER58B DNA MER1_type 198 254 -87 246 198 0 123 chr3 101510270 101510330 -126014248 + L1MEc LINE L1 3050 3093 -3122 1947 128 10 19 chr3 101510330 101510643 -126013935 + AluSx SINE Alu 1 310 -2 246 198 0 123 chr3 101510643 101510688 -126013890 + L1MEc LINE L1 3093 3142 -3073 296 146 22 124 chr3 101510689 101510778 -126013800 + MER58B DNA MER1_type 256 335 -6 2718 250 76 7 chr3 101510803 101511723 -126012855 + L1MEc LINE L1 2704 3687 -2528 1249 238 21 39 chr3 101511723 101512055 -126012523 - LTR53 LTR ERVL 0 519 194 572 194 34 134 chr3 101512240 101512433 -126012145 + L1MEc LINE L1 3683 3843 -2372 2076 102 4 0 chr3 101512433 101512699 -126011879 - AluSx SINE Alu -45 267 1 572 194 34 134 chr3 101512699 101512773 -126011805 + L1MEc LINE L1 3843 3923 -2292 27 0 0 0 chr3 101512823 101512850 -126011728 + AT_rich Low_complexity Low_complexity 1 27 0 408 250 25 77 chr3 101513014 101513210 -126011368 - HAL1 LINE L1 -1375 1132 947 1956 198 47 9 chr3 101513316 101513766 -126010812 + MLT1C LTR MaLR 1 467 0 263 24 0 49 chr3 101513882 101513923 -126010655 + (CAAA)n Simple_repeat Simple_repeat 1 39 0 686 217 13 0 chr3 101513993 101514145 -126010433 - MLT2B1 LTR ERVL -357 163 10 1536 189 50 49 chr3 101514153 101514437 -126010141 - ERVL LTR ERVL -3 5651 5383 261 0 0 0 chr3 101514437 101514466 -126010112 + (CA)n Simple_repeat Simple_repeat 2 30 0 1536 189 50 49 chr3 101514466 101514698 -126009880 - ERVL LTR ERVL -271 5383 5153 923 275 91 37 chr3 101515142 101515517 -126009061 + HAL1 LINE L1 1 395 -2112 411 240 72 32 chr3 101515736 101515861 -126008717 + HAL1 LINE L1 2328 2457 -50 323 304 152 42 chr3 101516076 101516267 -126008311 + MLT1J LTR MaLR 248 459 -52 26 30 0 0 chr3 101516342 101516375 -126008203 + AT_rich Low_complexity Low_complexity 1 33 0 241 313 18 27 chr3 101516526 101516638 -126007940 + L2 LINE L2 3189 3299 -14 965 196 70 10 chr3 101516725 101516924 -126007654 - MER20 DNA MER1_type -4 215 5 21 0 0 0 chr3 101517240 101517261 -126007317 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 101518775 101518796 -126005782 + AT_rich Low_complexity Low_complexity 1 21 0 384 230 80 40 chr3 101519336 101519436 -126005142 - MIR SINE MIR -109 153 50 192 200 0 0 chr3 101520515 101520565 -126004013 + (CCG)n Simple_repeat Simple_repeat 2 51 0 227 250 23 11 chr3 101520981 101521069 -126003509 + (CGG)n Simple_repeat Simple_repeat 2 90 0 275 459 0 0 chr3 101521480 101521589 -126002989 + G-rich Low_complexity Low_complexity 1 109 0 21 0 0 0 chr3 101522729 101522750 -126001828 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 101523211 101523232 -126001346 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 101525803 101525827 -125998751 + AT_rich Low_complexity Low_complexity 1 24 0 2115 84 3 18 chr3 101528563 101528874 -125995704 - AluSx SINE Alu 0 307 1 2848 187 77 50 chr3 101529411 101529514 -125995064 - ERVL-B1 LTR ERVL -896 4868 4769 181 118 0 29 chr3 101529514 101529548 -125995030 - L2 LINE L2 -1621 1693 1661 2848 187 77 50 chr3 101529548 101530084 -125994494 - ERVL-B1 LTR ERVL -995 4769 4178 1383 173 83 43 chr3 101530087 101530771 -125993807 - LTR1B LTR ERV1 0 826 34 10313 182 38 28 chr3 101530778 101532883 -125991695 - ERVL-B1 LTR ERVL -1578 4186 2060 2930 272 46 32 chr3 101532888 101533984 -125990594 - ERVL-B1 LTR ERVL -4542 1112 2 1575 204 23 114 chr3 101533985 101534555 -125990023 - MLT2B1 LTR ERVL 0 520 3 299 243 60 64 chr3 101535179 101535278 -125989300 + HAL1 LINE L1 869 967 -1540 2157 113 7 3 chr3 101535278 101535569 -125989009 + AluSg SINE Alu 1 292 -18 299 243 60 64 chr3 101535569 101535687 -125988891 + HAL1 LINE L1 967 1085 -1422 256 298 29 0 chr3 101535749 101535853 -125988725 - HAL1 LINE L1 -586 1921 1815 40 49 0 0 chr3 101535875 101535936 -125988642 + AT_rich Low_complexity Low_complexity 1 61 0 953 274 152 49 chr3 101536015 101536757 -125987821 + HAL1 LINE L1 1537 2384 -123 1458 183 0 68 chr3 101536757 101537079 -125987499 + AluJo SINE Alu 3 302 -10 953 274 152 49 chr3 101537079 101537212 -125987366 + HAL1 LINE L1 2384 2502 -5 1791 134 75 67 chr3 101537318 101537690 -125986888 + THE1C LTR MaLR 1 375 0 28 48 0 0 chr3 101538703 101538745 -125985833 + AT_rich Low_complexity Low_complexity 1 42 0 2365 75 16 13 chr3 101538749 101539057 -125985521 + AluSc SINE Alu 1 309 0 22 80 0 0 chr3 101539067 101539117 -125985461 + AT_rich Low_complexity Low_complexity 1 50 0 342 279 65 7 chr3 101539501 101539655 -125984923 - L1ME LINE L1 -331 5790 5628 1605 83 135 0 chr3 101539656 101539885 -125984693 + AluY SINE Alu 34 293 -18 718 177 69 0 chr3 101540134 101540264 -125984314 + FRAM SINE Alu 19 157 -19 24 0 0 0 chr3 101540264 101540288 -125984290 + AT_rich Low_complexity Low_complexity 1 24 0 988 238 56 27 chr3 101540309 101540683 -125983895 + L1ME1 LINE L1 3953 4337 -1809 2112 231 99 49 chr3 101540689 101541605 -125982973 + L1ME1 LINE L1 5204 6162 -4 1275 241 30 68 chr3 101541659 101542029 -125982549 - MLT1H LTR MaLR -183 366 11 319 179 62 80 chr3 101542076 101542188 -125982390 - L1MC5 LINE L1 -1000 6961 6852 401 217 120 11 chr3 101542212 101542304 -125982274 + MLT2E LTR ERVL 34 135 -493 404 302 6 34 chr3 101542561 101542740 -125981838 - L1MC4a LINE L1 -927 6881 6708 235 208 10 115 chr3 101542816 101542912 -125981666 - L2 LINE L2 -100 3213 3128 * 554 217 54 23 chr3 101542908 101543037 -125981541 + L2 LINE L2 3180 3312 -1 270 303 110 0 chr3 101543110 101543219 -125981359 + MER91C DNA MER1_type 20 140 0 181 330 35 75 chr3 101543225 101543425 -125981153 + L2 LINE L2 2293 2484 -830 4216 116 96 93 chr3 101543454 101544831 -125979747 + pTR5 LTR ERV1 743 2438 0 2286 75 0 37 chr3 101545170 101545491 -125979087 - AluY SINE Alu -2 309 1 317 119 34 0 chr3 101546312 101546371 -125978207 + GA-rich Low_complexity Low_complexity 3 63 0 2043 132 0 17 chr3 101546396 101546692 -125977886 + AluSx SINE Alu 3 293 -19 23 0 0 0 chr3 101547254 101547277 -125977301 + AT_rich Low_complexity Low_complexity 1 23 0 2346 108 0 0 chr3 101547493 101547790 -125976788 + AluSx SINE Alu 1 297 -15 1678 201 65 2 chr3 101547879 101548291 -125976287 + L1MA7 LINE L1 5848 6285 -6 2201 102 3 0 chr3 101548297 101548608 -125975970 - AluSp SINE Alu 0 312 1 21 71 0 0 chr3 101548614 101548656 -125975922 + AT_rich Low_complexity Low_complexity 1 42 0 2401 161 67 22 chr3 101548713 101549264 -125975314 + L1MA4 LINE L1 3939 4514 -1632 1863 168 75 10 chr3 101549269 101549656 -125974922 + MSTA LTR MaLR 5 416 -12 1373 127 11 84 chr3 101549662 101550016 -125974562 - MER4A LTR ERV1 -17 647 261 573 137 32 0 chr3 101550016 101550111 -125974467 - MER4A LTR ERV1 -566 98 1 5481 156 13 14 chr3 101550139 101550193 -125974385 + L1MA4 LINE L1 4512 4565 -1735 2141 131 53 11 chr3 101550193 101550553 -125974025 - THE1C LTR MaLR 0 375 1 5481 156 13 14 chr3 101550553 101552283 -125972295 + L1MA4 LINE L1 4565 6292 -8 571 309 27 42 chr3 101552870 101553203 -125971375 - LTR16B LTR ERVL -2 462 135 470 301 64 18 chr3 101553478 101553697 -125970881 + HAL1 LINE L1 1441 1669 -838 200 217 0 0 chr3 101553765 101553811 -125970767 + A-rich Low_complexity Low_complexity 1 46 0 3992 174 77 12 chr3 101553823 101554598 -125969980 - LTR1B LTR ERV1 0 826 1 715 263 34 38 chr3 101554714 101554976 -125969602 - LTR16C LTR ERVL 0 491 231 235 254 15 0 chr3 101554957 101555024 -125969554 + LTR1B LTR ERV1 303 370 -456 * 597 364 114 0 chr3 101555529 101556028 -125968550 - ERVL LTR ERVL -573 5191 4622 2371 185 128 67 chr3 101556028 101556806 -125967772 + LTR1B LTR ERV1 1 826 0 597 364 114 0 chr3 101556806 101556859 -125967719 - ERVL LTR ERVL -1142 4622 4576 566 324 45 18 chr3 101556937 101557492 -125967086 - ERVL LTR ERVL -1398 4256 3679 562 270 164 19 chr3 101557492 101557851 -125966727 + L1M4 LINE L1 2822 3232 -2914 476 382 41 18 chr3 101557841 101558184 -125966394 + L1ME3A LINE L1 5596 5946 -224 * 45 55 0 0 chr3 101558912 101558985 -125965593 + AT_rich Low_complexity Low_complexity 1 73 0 320 289 67 19 chr3 101560371 101560475 -125964103 + L2 LINE L2 3143 3251 -21 223 253 130 71 chr3 101560572 101560726 -125963852 - MIR SINE MIR -34 228 66 678 200 0 47 chr3 101560873 101560984 -125963594 + FLAM_C SINE Alu 1 105 -207 1719 135 61 71 chr3 101560984 101561362 -125963216 - THE1C LTR MaLR -1 374 1 678 200 0 47 chr3 101561362 101561400 -125963178 + FLAM_C SINE Alu 105 143 -169 27 29 0 0 chr3 101561413 101561447 -125963131 + AT_rich Low_complexity Low_complexity 1 34 0 1185 283 144 20 chr3 101561722 101562216 -125962362 - MLT1H1 LTR MaLR 0 555 1 270 336 42 28 chr3 101562619 101562762 -125961816 - MIR3 SINE MIR -19 189 45 2068 100 3 37 chr3 101562989 101563289 -125961289 - AluSc SINE Alu -19 290 1 228 143 0 0 chr3 101563349 101563398 -125961180 + L1MA8 LINE L1 6243 6291 0 711 226 43 4 chr3 101563404 101563661 -125960917 + L1M4 LINE L1 3154 3420 -2726 1992 114 48 0 chr3 101563903 101564193 -125960385 - AluSx SINE Alu -8 304 1 4006 204 23 42 chr3 101664533 101665245 -125859333 + L1M1 LINE L1 3115 3839 -3726 2417 57 7 0 chr3 101665245 101665546 -125859032 + AluY SINE Alu 1 303 -8 4006 204 23 42 chr3 101665546 101666366 -125858212 + L1M1 LINE L1 3839 4634 -2931 886 207 14 72 chr3 101666944 101667166 -125857412 - MER20 DNA MER1_type 0 219 11 21 0 0 0 chr3 101667324 101667345 -125857233 + AT_rich Low_complexity Low_complexity 1 21 0 * 185 375 47 23 chr3 101667343 101667471 -125857107 - MIR3 SINE MIR -14 194 64 24 32 0 0 chr3 101667624 101667655 -125856923 + AT_rich Low_complexity Low_complexity 1 31 0 204 282 110 7 chr3 101667665 101667783 -125856795 + MIR SINE MIR 9 142 -66 269 254 164 36 chr3 101667789 101667899 -125856679 + L2 LINE L2 3187 3310 -3 4684 250 42 22 chr3 101668061 101668291 -125856287 + L1M4 LINE L1 2960 3184 -2962 1851 142 23 19 chr3 101668291 101668601 -125855977 + AluSx SINE Alu 1 311 -1 4684 250 42 22 chr3 101668601 101669969 -125854609 + L1M4 LINE L1 3184 4589 -1557 329 270 34 0 chr3 101669976 101670065 -125854513 + L1MA10 LINE L1 6175 6266 -68 1570 205 62 15 chr3 101670228 101670618 -125853960 - MLT1C LTR MaLR -1 466 59 1716 133 15 8 chr3 101670701 101670964 -125853614 - AluJb SINE Alu -8 304 40 465 84 0 0 chr3 101670991 101671062 -125853516 - L1MA3 LINE L1 0 6305 6235 401 302 62 16 chr3 101671154 101671346 -125853232 - HsTC2 DNA Tc2 -1410 488 288 313 290 153 0 chr3 101671377 101671501 -125853077 - MIR SINE MIR -3 259 117 447 313 159 10 chr3 101671933 101672141 -125852437 + MIR SINE MIR 7 245 -17 7275 46 10 0 chr3 101672505 101673639 -125850939 - L1PA5 LINE L1 -2 6152 5017 869 265 71 11 chr3 101676732 101677015 -125847563 + LTR16A1 LTR ERVL 158 457 0 21 0 0 0 chr3 101677456 101677477 -125847101 + AT_rich Low_complexity Low_complexity 1 21 0 6381 87 12 0 chr3 101677608 101678927 -125845651 - L1PA8A LINE L1 0 6131 4804 6806 121 9 10 chr3 101679027 101680096 -125844482 - L1PA8A LINE L1 -1525 4621 3554 187 252 78 58 chr3 101680234 101680337 -125844241 - L3 LINE CR1 -531 1046 942 1277 214 0 0 chr3 101680946 101681184 -125843394 - AluJo SINE Alu -61 251 14 26 30 0 0 chr3 101681453 101681486 -125843092 + AT_rich Low_complexity Low_complexity 1 33 0 23 78 0 0 chr3 101682809 101682860 -125841718 + AT_rich Low_complexity Low_complexity 1 51 0 293 315 75 20 chr3 101683193 101683339 -125841239 + L2 LINE L2 2914 3067 -205 425 19 19 0 chr3 101683394 101683448 -125841130 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1809 131 73 0 chr3 101683451 101683726 -125840852 - AluSq SINE Alu -18 295 1 303 311 86 33 chr3 101683950 101684101 -125840477 - L2 LINE L2 -222 3050 2892 340 287 0 21 chr3 101684716 101684810 -125839768 - L2 LINE L2 0 3313 3222 498 301 97 44 chr3 101684860 101685086 -125839492 + MIR SINE MIR 3 240 -22 1614 165 10 26 chr3 101685620 101685953 -125838625 - AluJo SINE Alu 0 328 1 4728 93 41 33 chr3 101687115 101688288 -125836290 + SVA Other Other 2 1415 0 3078 160 22 33 chr3 101689121 101689801 -125834777 + SVA Other Other 758 1430 0 464 345 41 81 chr3 101690763 101690789 -125833789 + L2 LINE L2 2499 2525 -789 1725 160 35 27 chr3 101690789 101691158 -125833420 + THE1C LTR MaLR 1 372 -3 464 345 41 81 chr3 101691158 101691624 -125832954 + L2 LINE L2 2525 2971 -343 22 56 0 0 chr3 101692959 101692995 -125831583 + AT_rich Low_complexity Low_complexity 1 36 0 2282 143 10 15 chr3 101693105 101693503 -125831075 + MER61B LTR ERV1 1 396 -29 192 77 0 0 chr3 101693511 101693537 -125831041 + (TCTA)n Simple_repeat Simple_repeat 3 28 0 21 36 0 0 chr3 101694374 101694402 -125830176 + AT_rich Low_complexity Low_complexity 1 28 0 270 228 59 21 chr3 101694464 101694575 -125830003 - L1ME LINE L1 -330 5791 5675 237 65 0 0 chr3 101695286 101695317 -125829261 + (CA)n Simple_repeat Simple_repeat 2 32 0 219 164 18 36 chr3 101695317 101695372 -125829206 + (TATATG)n Simple_repeat Simple_repeat 5 58 0 21 71 0 0 chr3 101696089 101696131 -125828447 + AT_rich Low_complexity Low_complexity 1 42 0 393 303 56 43 chr3 101697102 101697264 -125827314 + MIR SINE MIR 22 185 -77 332 240 125 0 chr3 101697456 101697552 -125827026 - MIR SINE MIR -51 211 104 472 286 6 35 chr3 101698502 101698673 -125825905 + L2 LINE L2 2317 2482 -832 28 61 0 0 chr3 101698828 101698877 -125825701 + AT_rich Low_complexity Low_complexity 1 49 0 835 184 7 0 chr3 101699799 101699958 -125824620 - AluJb SINE Alu 0 307 148 395 104 79 3 chr3 101700697 101701025 -125823553 + (TA)n Simple_repeat Simple_repeat 1 352 0 1901 161 0 0 chr3 101701539 101701831 -125822747 + AluJb SINE Alu 1 292 -20 2198 122 6 3 chr3 101704185 101704497 -125820081 + AluSq SINE Alu 1 313 0 1424 172 30 42 chr3 101704731 101705064 -125819514 + MER33 DNA MER1_type 1 323 -1 449 372 9 14 chr3 101705303 101705518 -125819060 + MIR SINE MIR 49 262 0 2505 52 0 3 chr3 101705795 101706101 -125818477 + AluY SINE Alu 2 306 -5 287 271 0 6 chr3 101708057 101708227 -125816351 + (TG)n Simple_repeat Simple_repeat 2 170 0 248 305 12 0 chr3 101708240 101708322 -125816256 + (TG)n Simple_repeat Simple_repeat 2 84 0 255 278 0 0 chr3 101708337 101708463 -125816115 + (TG)n Simple_repeat Simple_repeat 2 127 0 996 297 125 43 chr3 101708796 101708994 -125815584 - HAL1 LINE L1 -1093 1414 1234 2587 102 13 8 chr3 101708994 101709367 -125815211 + THE1C LTR MaLR 1 375 0 996 297 125 43 chr3 101709367 101710118 -125814460 - HAL1 LINE L1 -1273 1234 387 458 301 59 0 chr3 101710558 101710797 -125813781 - L1ME3A LINE L1 -220 5950 5698 25 31 0 0 chr3 101710797 101710829 -125813749 + AT_rich Low_complexity Low_complexity 1 32 0 275 328 83 62 chr3 101711070 101711106 -125813472 - L2 LINE L2 -1 3312 3278 2238 155 53 17 chr3 101711106 101711519 -125813059 - MSTA LTR MaLR 0 428 1 275 328 83 62 chr3 101711519 101711772 -125812806 - L2 LINE L2 -35 3278 3017 24 0 0 0 chr3 101711841 101711865 -125812713 + AT_rich Low_complexity Low_complexity 1 24 0 581 116 32 11 chr3 101712610 101712705 -125811873 + MER4A LTR ERV1 1 97 -567 1723 136 158 78 chr3 101712706 101713080 -125811498 + MER4A LTR ERV1 261 664 0 1457 229 0 10 chr3 101713512 101713813 -125810765 + AluJo SINE Alu 1 298 -14 1643 286 113 18 chr3 101714363 101715103 -125809475 - L2 LINE L2 -217 3096 2304 1573 280 95 14 chr3 101715178 101715849 -125808729 + L1ME LINE L1 43 748 -5322 2431 123 19 6 chr3 101715849 101716208 -125808370 - THE1B LTR MaLR 0 364 1 9471 120 43 26 chr3 101716208 101717713 -125806865 - THE1B-int LTR MaLR 0 1580 50 1363 146 80 0 chr3 101717714 101717927 -125806651 - THE1B LTR MaLR -134 230 1 1438 245 56 20 chr3 101717931 101718545 -125806033 + L1ME LINE L1 767 1400 -4680 1040 290 157 11 chr3 101718578 101719019 -125805559 - L2 LINE L2 -1208 2106 1602 31 0 0 0 chr3 101720004 101720035 -125804543 + AT_rich Low_complexity Low_complexity 1 31 0 3328 165 36 3 chr3 101720035 101720677 -125803901 - L1MA4 LINE L1 -2 6298 5636 2049 185 12 5 chr3 101723235 101723635 -125800943 + MER57A LTR ERV1 1 403 0 463 139 26 52 chr3 101723898 101724013 -125800565 + MER3 DNA MER1_type 64 128 -81 26 0 0 0 chr3 101724620 101724646 -125799932 + AT_rich Low_complexity Low_complexity 1 26 0 13822 134 38 16 chr3 101725029 101727394 -125797184 + Tigger1 DNA MER2_type 1 2418 0 26 0 0 0 chr3 101728752 101728778 -125795800 + AT_rich Low_complexity Low_complexity 1 26 0 4856 122 4 12 chr3 101728781 101729545 -125795033 - L1PB2 LINE L1 -2 6149 5392 240 277 62 18 chr3 101731073 101731185 -125793393 - HAL1b LINE L1 -10 1338 1222 231 36 0 0 chr3 101731856 101731884 -125792694 + (TCTA)n Simple_repeat Simple_repeat 2 29 0 1006 183 0 6 chr3 101732224 101732399 -125792179 - AluJb SINE Alu -17 295 122 241 239 60 94 chr3 101732858 101732975 -125791603 - L2 LINE L2 0 3313 3201 238 197 82 16 chr3 101733217 101733278 -125791300 + MLT1I LTR MaLR 341 405 -4 376 289 82 46 chr3 101733411 101733509 -125791069 + MIR SINE MIR 13 106 -156 1921 187 94 0 chr3 101733509 101733904 -125790674 + MSTB1 LTR MaLR 1 432 0 376 289 82 46 chr3 101733904 101733999 -125790579 + MIR SINE MIR 106 213 -49 743 219 71 39 chr3 101735206 101735516 -125789062 - L1M4 LINE L1 -3180 2966 2647 637 179 7 14 chr3 101735589 101735734 -125788844 - L1MA4 LINE L1 -1 6299 6156 8612 183 35 50 chr3 101735850 101736853 -125787725 - L1MA4 LINE L1 -743 5403 4386 1295 173 165 0 chr3 101736853 101737101 -125787477 - AluSx SINE Alu -21 291 3 8612 183 35 50 chr3 101737101 101738413 -125786165 - L1MA4 LINE L1 -1760 4386 3204 1262 261 67 71 chr3 101739481 101740076 -125784502 + MLT1E LTR MaLR 1 593 0 512 142 0 47 chr3 101740159 101740265 -125784313 + L1MB3 LINE L1 5574 5674 -509 2549 171 40 4 chr3 101742761 101743241 -125781337 + L1MB3 LINE L1 5662 6158 -25 269 118 20 0 chr3 101743243 101743294 -125781284 + (TA)n Simple_repeat Simple_repeat 2 53 0 1798 138 0 15 chr3 101743309 101743578 -125781000 - AluSx SINE Alu -47 265 1 27 0 0 0 chr3 101745645 101745672 -125778906 + AT_rich Low_complexity Low_complexity 1 27 0 254 304 130 10 chr3 101746670 101746855 -125777723 - L2 LINE L2 -1362 1952 1738 1719 173 46 30 chr3 101746855 101747224 -125777354 + THE1C LTR MaLR 1 375 0 254 304 130 10 chr3 101747224 101747245 -125777333 - L2 LINE L2 -1576 1738 1721 28 0 0 0 chr3 101749745 101749773 -125774805 + AT_rich Low_complexity Low_complexity 1 28 0 1305 164 109 7 chr3 101750373 101750647 -125773931 - AluJo SINE Alu -8 304 3 220 322 52 17 chr3 101750677 101750792 -125773786 - L2 LINE L2 -594 2720 2602 1573 229 16 21 chr3 101751323 101751742 -125772836 - MER63 DNA MER1_type 0 1061 645 751 285 42 0 chr3 101751742 101751956 -125772622 + MER58A DNA MER1_type 2 224 0 526 198 25 0 chr3 101751961 101752082 -125772496 - MER63 DNA MER1_type -411 649 526 1713 156 132 27 chr3 101752915 101753318 -125771260 - MER65A LTR ERV1 0 445 1 2682 204 42 8 chr3 101753685 101754214 -125770364 + Tigger7 DNA MER2_type 1 547 -1940 446 211 11 0 chr3 101754216 101754306 -125770272 + Tigger7 DNA MER2_type 2397 2487 0 2639 37 0 0 chr3 101755824 101756122 -125768456 + AluY SINE Alu 1 298 -13 1928 128 13 13 chr3 101756367 101756665 -125767913 - AluSx SINE Alu -12 300 3 362 239 106 9 chr3 101757451 101757564 -125767014 + MIR3 SINE MIR 83 206 -2 249 266 133 5 chr3 101760300 101760440 -125764138 + MIR SINE MIR 10 176 -32 5373 22 0 0 chr3 101761830 101762454 -125762124 - L1PA2 LINE L1 0 6155 5532 181 83 56 0 chr3 101763691 101763727 -125760851 + (TCTA)n Simple_repeat Simple_repeat 1 38 0 21 36 0 0 chr3 101763865 101763893 -125760685 + AT_rich Low_complexity Low_complexity 1 28 0 2308 78 0 43 chr3 101764053 101764375 -125760203 + AluY SINE Alu 1 308 -3 1009 172 39 79 chr3 101765305 101765584 -125758994 + L1MA4 LINE L1 6014 6281 -19 1842 147 18 0 chr3 101765771 101766050 -125758528 - AluSx SINE Alu -26 286 3 824 105 8 0 chr3 101766456 101766580 -125757998 + L1PA12 LINE L1 6044 6168 0 4371 250 23 22 chr3 101767018 101768444 -125756134 - L1M1 LINE L1 -5114 2451 154 2846 267 61 40 chr3 101768460 101769582 -125754996 - L1MEc LINE L1 -5214 1182 38 452 179 0 0 chr3 101769591 101769669 -125754909 + MER115 DNA AcHobo 607 684 -9 26 50 0 0 chr3 101769732 101769772 -125754806 + AT_rich Low_complexity Low_complexity 1 40 0 538 245 86 82 chr3 101770101 101770358 -125754220 - MIR SINE MIR -3 259 2 2135 119 36 28 chr3 101771981 101772342 -125752236 - THE1B LTR MaLR 0 364 1 891 308 97 15 chr3 101773398 101773801 -125750777 - L2 LINE L2 -2 3311 2876 267 379 40 0 chr3 101774387 101774511 -125750067 - L2 LINE L2 -426 2888 2760 373 296 9 0 chr3 101774571 101774694 -125749884 + L1ME LINE L1 175 298 -5907 341 353 92 36 chr3 101774883 101775220 -125749358 + L1ME LINE L1 253 608 -5597 2012 174 12 44 chr3 101775374 101775781 -125748797 - MER65A LTR ERV1 0 445 52 589 109 10 10 chr3 101775781 101775882 -125748696 + (TTTC)n Simple_repeat Simple_repeat 3 103 0 244 79 26 0 chr3 101775895 101775933 -125748645 - MER65B LTR ERV1 -492 39 1 1361 211 20 89 chr3 101775935 101776328 -125748250 + MLT1A2 LTR MaLR 1 366 -8 1611 273 60 51 chr3 101776345 101777245 -125747333 + L1ME LINE L1 633 1540 -4677 469 248 82 37 chr3 101777325 101777443 -125747135 + L1ME LINE L1 1798 1909 -4487 447 47 0 245 chr3 101777443 101777549 -125747029 + MADE1 DNA Mariner 1 80 0 469 248 82 37 chr3 101777549 101777724 -125746854 + L1ME LINE L1 1909 2104 -4292 21 0 0 0 chr3 101778689 101778710 -125745868 + AT_rich Low_complexity Low_complexity 1 21 0 262 178 30 50 chr3 101779021 101779122 -125745456 + CT-rich Low_complexity Low_complexity 4 102 0 213 219 94 0 chr3 101779137 101779233 -125745345 + (TA)n Simple_repeat Simple_repeat 2 106 0 384 280 50 78 chr3 101779545 101779827 -125744751 - MLT1L LTR MaLR -175 440 167 21 36 0 0 chr3 101781715 101781743 -125742835 + AT_rich Low_complexity Low_complexity 1 28 0 364 96 0 0 chr3 101782343 101782395 -125742183 + MADE1 DNA Mariner 29 80 0 3075 268 57 41 chr3 101782399 101784150 -125740428 + L1MEc LINE L1 1921 3673 -2542 540 324 17 0 chr3 101784150 101784326 -125740252 - L2 LINE L2 -617 2697 2519 645 314 23 0 chr3 101784336 101784556 -125740022 - L2 LINE L2 -934 2380 2156 21 0 0 0 chr3 101786178 101786199 -125738379 + AT_rich Low_complexity Low_complexity 1 21 0 290 218 10 109 chr3 101786347 101786448 -125738130 + L2 LINE L2 3223 3313 0 473 384 109 27 chr3 101786850 101787520 -125737058 + L2 LINE L2 1869 2593 -721 531 296 87 20 chr3 101787667 101787863 -125736715 - MIR SINE MIR 0 262 54 859 221 54 29 chr3 101788494 101788698 -125735880 + MER3 DNA MER1_type 1 209 0 31 76 0 0 chr3 101790490 101790556 -125734022 + AT_rich Low_complexity Low_complexity 1 66 0 21 36 0 0 chr3 101790599 101790627 -125733951 + AT_rich Low_complexity Low_complexity 1 28 0 602 242 7 0 chr3 101791855 101792008 -125732570 + L1MA10 LINE L1 6174 6327 -7 189 372 53 0 chr3 101793003 101793097 -125731481 + MIR SINE MIR 22 120 -88 213 193 12 24 chr3 101793115 101793198 -125731380 + CT-rich Low_complexity Low_complexity 3 84 0 314 326 40 18 chr3 101793330 101793556 -125731022 + MIR SINE MIR 17 246 -16 2287 75 3 25 chr3 101793711 101794029 -125730549 - AluY SINE Alu 0 311 1 2405 300 100 71 chr3 101794158 101796188 -125728390 - L2 LINE L2 -26 3287 1164 2205 113 0 3 chr3 101796188 101796490 -125728088 - AluSq SINE Alu -12 301 1 2405 300 100 71 chr3 101796490 101797071 -125727507 - L2 LINE L2 -2149 1164 601 2072 112 0 30 chr3 101797228 101797533 -125727045 - AluSc SINE Alu -13 296 1 1473 185 4 8 chr3 101797809 101798063 -125726515 - AluJo SINE Alu -31 281 29 1434 268 27 97 chr3 101798967 101799821 -125724757 - L2 LINE L2 0 3313 2513 445 289 102 6 chr3 101801022 101801188 -125723390 + MIR SINE MIR 10 191 -71 1116 347 109 52 chr3 101801379 101804181 -125720397 - L2 LINE L2 0 3272 319 774 236 101 69 chr3 101804230 101804440 -125720138 - L1MC/D LINE L1 -549 5615 5410 2115 122 0 3 chr3 101804440 101804736 -125719842 - AluSq SINE Alu -18 295 1 774 236 101 69 chr3 101804736 101804899 -125719679 - L1MC/D LINE L1 -754 5410 5254 1201 117 15 10 chr3 101804910 101805107 -125719471 + L1PA14 LINE L1 5961 6158 -3 1600 238 157 12 chr3 101805221 101805965 -125718613 - L1MC/D LINE L1 -952 5194 4343 659 383 36 39 chr3 101805991 101806164 -125718414 - L2 LINE L2 -8 3264 3092 2533 20 10 3 chr3 101806164 101806466 -125718112 - AluY SINE Alu -7 304 1 659 383 36 39 chr3 101806466 101807069 -125717509 - L2 LINE L2 -180 3092 2453 21 82 0 0 chr3 101807723 101807772 -125716806 + AT_rich Low_complexity Low_complexity 1 49 0 255 330 11 0 chr3 101808884 101808975 -125715603 + L2 LINE L2 3208 3299 -14 23 0 0 0 chr3 101809121 101809144 -125715434 + AT_rich Low_complexity Low_complexity 1 23 0 337 330 31 0 chr3 101809576 101809673 -125714905 - L2 LINE L2 0 3272 3173 1559 243 99 24 chr3 101810452 101810918 -125713660 + MLT1D LTR MaLR 2 502 -3 545 316 78 32 chr3 101812850 101813185 -125711393 + L1MC/D LINE L1 5427 5769 -393 401 313 60 0 chr3 101814244 101814394 -125710184 - MIR SINE MIR 0 262 104 2491 166 18 25 chr3 101815450 101815938 -125708640 + MER31A LTR ERV1 1 485 0 880 326 104 16 chr3 101815939 101816390 -125708188 + LTR33 LTR ERVL 31 521 0 473 304 6 44 chr3 101816540 101816698 -125707880 + MIR3 SINE MIR 54 205 -3 180 0 0 0 chr3 101817941 101817961 -125706617 + (A)n Simple_repeat Simple_repeat 1 20 0 272 27 27 0 chr3 101818358 101818395 -125706183 + (TTTA)n Simple_repeat Simple_repeat 4 41 0 1992 123 4 0 chr3 101818395 101818671 -125705907 - AluSx SINE Alu -35 277 1 32 26 0 0 chr3 101818677 101818716 -125705862 + AT_rich Low_complexity Low_complexity 1 39 0 587 51 13 0 chr3 101821988 101822067 -125702511 + (TCTA)n Simple_repeat Simple_repeat 1 80 0 1182 206 53 45 chr3 101822275 101822654 -125701924 + Charlie5 DNA MER1_type 2243 2624 0 21 0 0 0 chr3 101822821 101822842 -125701736 + AT_rich Low_complexity Low_complexity 1 21 0 1439 216 50 24 chr3 101823244 101823582 -125700996 - MER7A DNA MER2_type 0 346 2 687 312 107 10 chr3 101823797 101824198 -125700380 + L1MC4 LINE L1 7415 7854 -188 201 74 0 0 chr3 101824254 101824281 -125700297 + (TG)n Simple_repeat Simple_repeat 1 27 0 312 359 64 28 chr3 101824544 101824795 -125699783 + L1ME LINE L1 5290 5549 -572 204 40 0 0 chr3 101824834 101824859 -125699719 + (TA)n Simple_repeat Simple_repeat 2 26 0 2108 122 0 0 chr3 101824918 101825222 -125699356 - AluSc SINE Alu 0 309 6 180 0 0 0 chr3 101825668 101825688 -125698890 + (CA)n Simple_repeat Simple_repeat 1 20 0 210 269 45 0 chr3 101826281 101826348 -125698230 - MIR SINE MIR -32 230 161 2185 103 3 6 chr3 101826635 101826946 -125697632 + AluSx SINE Alu 1 310 -2 40 37 0 0 chr3 101827629 101827683 -125696895 + AT_rich Low_complexity Low_complexity 1 54 0 292 338 65 13 chr3 101828280 101828434 -125696144 - L3 LINE CR1 -154 1423 1262 261 119 0 0 chr3 101829084 101829126 -125695452 + (TG)n Simple_repeat Simple_repeat 2 43 0 27 0 0 0 chr3 101829258 101829285 -125695293 + AT_rich Low_complexity Low_complexity 1 27 0 679 156 7 15 chr3 101829292 101829427 -125695151 - L1PA15 LINE L1 -1 6164 6031 3349 130 24 6 chr3 101829427 101829934 -125694644 + MER1A DNA MER1_type 1 516 -13 2689 110 11 0 chr3 101829939 101830321 -125694257 - L1PA15 LINE L1 -193 5972 5587 633 238 6 31 chr3 101830640 101830800 -125693778 - MER5B DNA MER1_type -22 156 1 24 67 0 0 chr3 101831176 101831221 -125693357 + AT_rich Low_complexity Low_complexity 1 45 0 30 0 0 0 chr3 101831575 101831605 -125692973 + AT_rich Low_complexity Low_complexity 1 30 0 2033 123 7 7 chr3 101832070 101832363 -125692215 - AluSx SINE Alu -19 293 1 24 0 0 0 chr3 101832369 101832393 -125692185 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 101832826 101832854 -125691724 + AT_rich Low_complexity Low_complexity 1 28 0 354 300 18 36 chr3 101832950 101833060 -125691518 + L2 LINE L2 3198 3305 -8 244 307 80 29 chr3 101834212 101834349 -125690229 - MIR SINE MIR -63 145 2 21 0 0 0 chr3 101835136 101835157 -125689421 + AT_rich Low_complexity Low_complexity 1 21 0 2031 105 0 3 chr3 101835168 101835462 -125689116 - L1PB1 LINE L1 -3 6148 5856 756 60 8 60 chr3 101835473 101835590 -125688988 - HY1 scRNA scRNA -1 111 1 346 306 27 66 chr3 101835751 101835934 -125688644 - HAL1 LINE L1 -932 1575 1400 233 277 98 9 chr3 101836104 101836216 -125688362 - HAL1 LINE L1 -1230 1277 1156 227 247 0 55 chr3 101836496 101836569 -125688009 - HAL1 LINE L1 -1476 1031 963 2281 72 0 28 chr3 101836720 101837040 -125687538 + AluY SINE Alu 1 311 0 254 346 28 0 chr3 101837939 101838046 -125686532 - MIR3 SINE MIR -20 188 79 1015 117 31 12 chr3 101838158 101838320 -125686258 - THE1C LTR MaLR -210 165 1 9617 116 38 46 chr3 101838320 101839912 -125684666 - THE1C-int LTR MaLR 0 1580 1 2375 133 5 11 chr3 101839914 101840289 -125684289 - THE1C LTR MaLR -2 373 1 375 283 40 0 chr3 101840331 101840430 -125684148 - MER5A DNA MER1_type -77 112 10 195 186 0 0 chr3 101841078 101841121 -125683457 + (CTA)n Simple_repeat Simple_repeat 3 45 0 21 36 0 0 chr3 101841307 101841335 -125683243 + AT_rich Low_complexity Low_complexity 1 28 0 217 309 88 55 chr3 101842039 101842220 -125682358 - MIR SINE MIR -57 205 19 2826 186 93 14 chr3 101842402 101843057 -125681521 + MER39 LTR ERV1 1 707 0 2257 105 0 0 chr3 101843616 101843912 -125680666 + AluSc SINE Alu 1 296 -13 301 241 51 0 chr3 101844052 101844131 -125680447 + MER94 DNA DNA 1 83 -51 367 342 34 0 chr3 101844149 101844266 -125680312 + MIR3 SINE MIR 71 191 -17 427 264 0 16 chr3 101846317 101846438 -125678140 - FLAM_A SINE Alu -14 119 1 617 344 27 5 chr3 101846631 101846852 -125677726 - MIR SINE MIR 0 262 37 35 24 0 0 chr3 101846975 101847017 -125677561 + AT_rich Low_complexity Low_complexity 1 42 0 25 51 0 0 chr3 101848060 101848099 -125676479 + AT_rich Low_complexity Low_complexity 1 39 0 1550 152 24 71 chr3 101849270 101849567 -125675011 + AluSx SINE Alu 24 306 -6 1200 189 38 13 chr3 101849664 101849902 -125674676 - AluJo SINE Alu -17 295 52 379 18 55 0 chr3 101849978 101850033 -125674545 + (TTTC)n Simple_repeat Simple_repeat 3 60 0 1805 114 99 4 chr3 101850035 101850488 -125674090 - AluSg SINE Alu 0 479 1 323 310 57 19 chr3 101851170 101851328 -125673250 + L1ME LINE L1 5212 5375 -771 325 294 118 48 chr3 101851416 101851644 -125672934 + L1ME LINE L1 5488 5731 -390 224 262 19 39 chr3 101852406 101852509 -125672069 + (TCTCTG)n Simple_repeat Simple_repeat 4 104 0 220 197 15 15 chr3 101853138 101853204 -125671374 + CT-rich Low_complexity Low_complexity 4 69 0 315 0 0 0 chr3 101853921 101853956 -125670622 + (CA)n Simple_repeat Simple_repeat 2 36 0 189 0 0 0 chr3 101853955 101853976 -125670602 + (TA)n Simple_repeat Simple_repeat 1 21 0 * 180 0 0 0 chr3 101853975 101853995 -125670583 + (GA)n Simple_repeat Simple_repeat 2 21 0 * 1898 124 4 7 chr3 101853995 101854269 -125670309 - AluSx SINE Alu -39 273 1 25 0 0 0 chr3 101854269 101854294 -125670284 + AT_rich Low_complexity Low_complexity 1 25 0 2561 228 42 87 chr3 101854294 101855170 -125669408 - L1MA9 LINE L1 -38 6274 5438 309 81 65 0 chr3 101855207 101855269 -125669309 - L1MA7 LINE L1 -1 6290 6225 781 133 8 8 chr3 101855269 101855397 -125669181 + L1MA7 LINE L1 5806 5933 -358 * 895 177 5 0 chr3 101855396 101855582 -125668996 - L1MA9 LINE L1 -728 5440 5254 21 0 0 0 chr3 101855791 101855812 -125668766 + AT_rich Low_complexity Low_complexity 1 21 0 1997 233 44 7 chr3 101858020 101858856 -125665722 - L1ME LINE L1 -368 5798 4935 1022 155 36 18 chr3 101858859 101859078 -125665500 - L1MA9 LINE L1 0 6312 6090 5211 181 43 12 chr3 101859081 101860879 -125663699 - L1MA9 LINE L1 -283 6029 4180 651 268 28 20 chr3 101860885 101861135 -125663443 - L1ME LINE L1 -1198 4948 4697 1041 225 85 29 chr3 101861182 101861524 -125663054 - L1MD3 LINE L1 -79 7916 7556 * 1584 283 56 29 chr3 101861523 101861637 -125662941 - L1ME LINE L1 -2357 3789 3680 1977 118 4 4 chr3 101861637 101861977 -125662601 + AluSx SINE Alu 3 342 0 1584 283 56 29 chr3 101861977 101862363 -125662215 - L1ME LINE L1 -2466 3680 3255 2165 129 0 0 chr3 101862363 101862672 -125661906 - AluSx SINE Alu -3 309 1 1584 283 56 29 chr3 101862672 101862986 -125661592 - L1ME LINE L1 -2891 3255 2951 642 287 82 7 chr3 101863029 101863308 -125661270 - L1ME LINE L1 -3316 2830 2531 282 284 90 62 chr3 101863622 101864023 -125660555 - L1M4 LINE L1 -1837 4309 3898 493 204 51 22 chr3 101864800 101864937 -125659641 - L1ME3A LINE L1 0 6170 6030 1984 132 7 3 chr3 101865031 101865327 -125659251 + AluSp SINE Alu 5 301 -12 2459 70 0 0 chr3 101865493 101865795 -125658783 + AluY SINE Alu 1 302 -9 356 315 6 28 chr3 101865813 101865991 -125658587 - L1ME LINE L1 -586 5584 5411 915 191 143 0 chr3 101865991 101866180 -125658398 - AluJb SINE Alu -16 296 81 331 259 35 9 chr3 101866188 101866304 -125658274 - L1P LINE L1 -767 5407 5289 213 39 0 0 chr3 101866336 101866362 -125658216 + (TA)n Simple_repeat Simple_repeat 2 27 0 6741 36 0 13 chr3 101867719 101868548 -125656030 + L1PA4 LINE L1 5338 6155 0 216 288 128 24 chr3 101869004 101869129 -125655449 - MIR SINE MIR 0 262 125 393 224 0 0 chr3 101871412 101871537 -125653041 + CT-rich Low_complexity Low_complexity 2 126 0 210 295 21 42 chr3 101871903 101871998 -125652580 + L2 LINE L2 3176 3268 -4 845 235 30 11 chr3 101872241 101872505 -125652073 - L1 LINE L1 -1081 5065 4797 * 4519 214 12 11 chr3 101872499 101873533 -125651045 - L1 LINE L1 -1683 4463 3429 263 321 141 45 chr3 101873888 101874306 -125650272 + L2 LINE L2 2169 2626 -688 1739 167 121 34 chr3 101874307 101874818 -125649760 + MLT2A2 LTR ERVL 1 554 0 272 345 106 43 chr3 101875131 101875366 -125649212 + L2 LINE L2 2834 3083 -189 521 221 0 8 chr3 101875604 101875735 -125648843 - L1MA10 LINE L1 -2 6332 6203 504 281 17 22 chr3 101875762 101875940 -125648638 - L1ME1 LINE L1 -135 6031 5855 277 212 12 12 chr3 101875956 101876041 -125648537 - L1ME1 LINE L1 -295 5871 5787 * 454 181 9 0 chr3 101876020 101876136 -125648442 - L1 LINE L1 -3185 2961 2845 314 343 39 0 chr3 101876172 101876345 -125648233 - HERVL LTR ERVL -3419 1577 1394 270 81 0 0 chr3 101876380 101876417 -125648161 + (CA)n Simple_repeat Simple_repeat 2 38 0 245 303 47 20 chr3 101877857 101877994 -125646584 - MIR SINE MIR -63 145 2 3508 210 106 13 chr3 101879762 101880854 -125643724 + Charlie5 DNA MER1_type 1 1194 -1418 508 190 11 86 chr3 101880853 101881027 -125643551 + Charlie5 DNA MER1_type 2464 2624 0 * 339 214 68 39 chr3 101881031 101881134 -125643444 + L2 LINE L2 3191 3296 -17 270 286 13 0 chr3 101881226 101881303 -125643275 + CT-rich Low_complexity Low_complexity 1 78 0 22 0 0 0 chr3 101881497 101881519 -125643059 + AT_rich Low_complexity Low_complexity 1 22 0 225 94 0 0 chr3 101882019 101882051 -125642527 + (TCCCC)n Simple_repeat Simple_repeat 2 33 0 23 33 0 0 chr3 101882117 101882147 -125642431 + GC_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 101882266 101882287 -125642291 + AT_rich Low_complexity Low_complexity 1 21 0 243 0 0 0 chr3 101882436 101882463 -125642115 + (T)n Simple_repeat Simple_repeat 1 27 0 947 307 221 36 chr3 101882509 101883408 -125641170 + L2 LINE L2 77 1142 -2172 337 265 104 91 chr3 101883412 101883642 -125640936 + L2 LINE L2 2201 2433 -881 582 291 65 0 chr3 101884744 101884943 -125639635 - MIR SINE MIR -2 260 49 241 277 0 0 chr3 101884996 101885061 -125639517 + L1MC4a LINE L1 5480 5544 -620 2731 254 111 93 chr3 101885078 101887241 -125637337 + L1MC4a LINE L1 5600 7808 0 314 279 58 0 chr3 101888012 101888116 -125636462 + L1MC4a LINE L1 4251 4360 -1786 26 0 0 0 chr3 101888219 101888245 -125636333 + AT_rich Low_complexity Low_complexity 1 26 0 269 220 68 23 chr3 101888430 101888582 -125635996 + L1P LINE L1 4787 4948 -1198 301 261 77 31 chr3 101888859 101888989 -125635589 + L1MC4a LINE L1 5299 5434 -2374 846 298 60 0 chr3 101889027 101889393 -125635185 + L1MC4a LINE L1 5510 5897 -1911 283 316 26 62 chr3 101889395 101889588 -125634990 - L2 LINE L2 -24 3289 3104 2302 67 19 6 chr3 101890079 101890392 -125634186 + L1PA7 LINE L1 5836 6152 -2 226 224 0 0 chr3 101891459 101891508 -125633070 + CT-rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr3 101891508 101891540 -125633038 + AT_rich Low_complexity Low_complexity 1 32 0 389 278 69 102 chr3 101891642 101891879 -125632699 + L2 LINE L2 1699 1921 -1393 928 75 45 0 chr3 101891879 101892012 -125632566 + MER85 DNA T2_type 1 139 0 389 278 69 102 chr3 101892012 101892137 -125632441 + L2 LINE L2 1921 2049 -1265 530 301 121 47 chr3 101892147 101892576 -125632002 - MLT1J LTR MaLR -24 487 27 551 294 5 64 chr3 101892712 101892930 -125631648 + MIR SINE MIR 37 241 -21 999 357 106 39 chr3 101893233 101894739 -125629839 + L2 LINE L2 217 1823 -1491 2380 146 43 41 chr3 101894808 101895301 -125629277 - L1MA9 LINE L1 -6 6306 5813 3484 87 2 0 chr3 101895307 101895777 -125628801 - L1PA5 LINE L1 -4 6150 5680 1100 140 27 0 chr3 101895786 101895972 -125628606 - L1PA5 LINE L1 -13 6141 5951 4461 107 6 1 chr3 101896074 101896738 -125627840 - L1PA5 LINE L1 -1063 5083 4417 * 6736 88 3 17 chr3 101896726 101897705 -125626873 + L1PA5 LINE L1 3443 4407 -1739 2711 237 33 8 chr3 101897924 101898553 -125626025 + MER82 DNA MER2_type 8 652 -1 1762 139 3 66 chr3 101899007 101899137 -125625441 + AluSx SINE Alu 1 138 -174 328 154 0 0 chr3 101899137 101899202 -125625376 + L1PA13 LINE L1 6098 6162 -1 1762 139 3 66 chr3 101899202 101899366 -125625212 + AluSx SINE Alu 138 278 -34 1557 140 0 0 chr3 101899366 101899601 -125624977 + AluSx SINE Alu 62 296 -16 281 243 55 39 chr3 101899951 101900132 -125624446 - L1M4 LINE L1 -2158 3988 3805 286 330 21 32 chr3 101902021 101902115 -125622463 - L2 LINE L2 -38 3234 3142 297 203 78 0 chr3 101902254 101902318 -125622260 - U6 snRNA snRNA -15 92 24 372 94 0 0 chr3 101902599 101902652 -125621926 + (TA)n Simple_repeat Simple_repeat 1 53 0 3134 88 0 31 chr3 101902828 101903285 -125621293 + L1PA8 LINE L1 5703 6145 -27 424 294 29 15 chr3 101903619 101903755 -125620823 + L2 LINE L2 3168 3305 -8 29 28 0 0 chr3 101904244 101904280 -125620298 + AT_rich Low_complexity Low_complexity 1 36 0 1885 157 91 3 chr3 101905059 101905390 -125619188 + THE1B LTR MaLR 5 364 0 4877 93 3 0 chr3 101905390 101906046 -125618532 + THE1B-int LTR MaLR 1 658 -922 1329 112 5 20 chr3 101906045 101906241 -125618337 - THE1-int LTR MaLR -741 839 647 * 203 234 21 0 chr3 101906600 101906647 -125617931 + (TA)n Simple_repeat Simple_repeat 1 48 0 462 270 184 7 chr3 101906798 101906950 -125617628 + MER5A DNA MER1_type 11 189 0 464 221 52 0 chr3 101906987 101907141 -125617437 - Charlie5 DNA MER1_type 0 2624 2463 674 255 72 39 chr3 101907144 101907352 -125617226 + MER20 DNA MER1_type 5 219 0 225 250 17 0 chr3 101907751 101907811 -125616767 + CT-rich Low_complexity Low_complexity 5 65 0 201 376 16 24 chr3 101908064 101908189 -125616389 + MIR3 SINE MIR 62 185 -23 2223 81 0 0 chr3 101908373 101908686 -125615892 - AluY SINE Alu 0 313 1 1467 136 175 23 chr3 101908933 101909241 -125615337 - MLT1A1 LTR MaLR 0 365 11 224 298 106 11 chr3 101909377 101909471 -125615107 + MIR SINE MIR 54 156 -106 687 75 0 0 chr3 101910698 101910792 -125613786 + (TA)n Simple_repeat Simple_repeat 2 95 0 244 174 43 0 chr3 101911549 101911595 -125612983 + MIR SINE MIR 157 204 -58 42507 36 23 1 chr3 101911686 101917702 -125606876 - L1PA2 LINE L1 -6 6149 1 202 371 73 8 chr3 101918569 101918693 -125605885 - L2 LINE L2 0 3272 3141 379 202 28 35 chr3 101918868 101919019 -125605559 + L1ME3A LINE L1 5936 6084 -86 818 236 55 57 chr3 101919078 101919411 -125605167 + MLT1B LTR MaLR 1 367 -61 2282 247 54 20 chr3 101919412 101920152 -125604426 + L1M2 LINE L1 2149 2913 -3233 715 206 0 14 chr3 101920177 101920318 -125604260 + AluJb SINE Alu 4 142 -170 2191 74 14 0 chr3 101920320 101920603 -125603975 + AluY SINE Alu 1 287 -24 2184 193 32 42 chr3 101920620 101921640 -125602938 + L1M2 LINE L1 3479 5616 -675 4226 70 23 29 chr3 101921640 101922253 -125602325 + L1PA7 LINE L1 5542 6150 -4 446 285 135 20 chr3 101922771 101922971 -125601607 + MLT1H1 LTR MaLR 10 232 -323 317 265 92 54 chr3 101923067 101923252 -125601326 + MLT1H1 LTR MaLR 370 561 -6 262 296 14 21 chr3 101923266 101923408 -125601170 + L1M4 LINE L1 4100 4240 -1906 25 31 0 0 chr3 101923514 101923546 -125601032 + AT_rich Low_complexity Low_complexity 1 32 0 475 321 112 36 chr3 101923701 101924293 -125600285 - L1MB5 LINE L1 -268 5906 5268 5938 220 50 8 chr3 101924366 101926544 -125598034 - L1PA8A LINE L1 -1 6130 3859 1706 143 56 80 chr3 101926545 101926728 -125597850 - THE1C LTR MaLR -7 368 197 2217 114 3 0 chr3 101926728 101927035 -125597543 - AluSp SINE Alu -5 308 1 1706 143 56 80 chr3 101927035 101927228 -125597350 - THE1C LTR MaLR -178 197 1 3359 216 11 19 chr3 101927228 101928061 -125596517 - L1PA8A LINE L1 -2283 3863 3038 2343 124 0 0 chr3 101928077 101928431 -125596147 - L1PB1 LINE L1 -7 6860 6507 402 170 0 0 chr3 101928444 101928538 -125596040 + (TA)n Simple_repeat Simple_repeat 1 94 0 3304 155 20 2 chr3 101928543 101929287 -125595291 - L1PB1 LINE L1 -359 6508 5752 6158 176 66 10 chr3 101929534 101931791 -125592787 - L1PB1 LINE L1 -2682 4180 1798 3105 183 41 2 chr3 101982406 101982965 -125541613 + LTR69 LTR ERVL 1 581 -7 274 317 81 0 chr3 101983441 101983564 -125541014 + MIR SINE MIR 99 231 -31 22 0 0 0 chr3 101983732 101983754 -125540824 + AT_rich Low_complexity Low_complexity 1 22 0 1675 177 0 0 chr3 101983754 101984036 -125540542 + AluJb SINE Alu 1 282 -30 509 247 70 44 chr3 101985256 101985414 -125539164 - MIR SINE MIR -37 225 64 198 0 0 0 chr3 101985780 101985802 -125538776 + (TC)n Simple_repeat Simple_repeat 1 22 0 441 300 12 31 chr3 101986348 101986508 -125538070 + MER69A DNA AcHobo 2 158 -19 454 266 95 13 chr3 101986676 101986834 -125537744 + MLT1J1 LTR MaLR 274 444 -2 233 378 34 8 chr3 101987188 101987307 -125537271 + MIR SINE MIR 20 141 -121 336 148 0 0 chr3 101987368 101987429 -125537149 + (TG)n Simple_repeat Simple_repeat 1 61 0 419 215 108 57 chr3 101988072 101988230 -125536348 + L2 LINE L2 2937 3102 -170 248 367 0 0 chr3 101991067 101991146 -125533432 - L2 LINE L2 0 3272 3194 30 45 0 0 chr3 101991161 101991205 -125533373 + AT_rich Low_complexity Low_complexity 1 44 0 26 0 0 0 chr3 101992367 101992393 -125532185 + AT_rich Low_complexity Low_complexity 1 26 0 210 259 17 0 chr3 101993924 101993982 -125530596 + MER5A DNA MER1_type 44 102 -87 224 230 54 27 chr3 101994298 101994372 -125530206 - MER5A DNA MER1_type -3 186 111 198 274 94 28 chr3 101994407 101994513 -125530065 - MER5A DNA MER1_type -69 120 8 1831 82 8 0 chr3 101995330 101995573 -125529005 - L1P4 LINE L1 -437 5726 5482 1976 109 0 29 chr3 101995573 101995884 -125528694 + L1PA13 LINE L1 5860 6163 0 354 284 62 44 chr3 101995902 101996127 -125528451 + L1M4 LINE L1 2933 3161 -2985 27 62 0 0 chr3 101996135 101996183 -125528395 + AT_rich Low_complexity Low_complexity 1 48 0 490 357 191 15 chr3 101996476 101997226 -125527352 - L2 LINE L2 -1481 1833 952 303 348 62 46 chr3 101997446 101997699 -125526879 - L2 LINE L2 -2833 481 221 2336 84 0 7 chr3 101997699 101997998 -125526580 + AluSg SINE Alu 1 297 -13 303 348 62 46 chr3 101997998 101998049 -125526529 - L2 LINE L2 -3093 221 172 513 420 35 14 chr3 101998678 101999107 -125525471 + L2 LINE L2 2831 3268 -4 21 0 0 0 chr3 102000217 102000238 -125524340 + AT_rich Low_complexity Low_complexity 1 21 0 1188 170 126 67 chr3 102000558 102000899 -125523679 + MLT1A1 LTR MaLR 1 361 -4 3746 230 53 81 chr3 102000903 102002144 -125522434 + MLT1A1-int LTR MaLR 1 1206 -529 506 297 62 41 chr3 102002298 102002646 -125521932 + MLT1K LTR MaLR 181 574 -14 27 0 0 0 chr3 102002708 102002735 -125521843 + AT_rich Low_complexity Low_complexity 1 27 0 1195 167 75 11 chr3 102002887 102003169 -125521409 + MER33 DNA MER1_type 3 302 -22 333 118 0 0 chr3 102003449 102003500 -125521078 + (TTCC)n Simple_repeat Simple_repeat 1 51 0 1024 50 25 19 chr3 102003500 102003661 -125520917 + (TTTC)n Simple_repeat Simple_repeat 4 165 0 954 281 113 49 chr3 102004056 102004523 -125520055 + MLT1J LTR MaLR 5 501 -10 24 0 0 0 chr3 102005454 102005478 -125519100 + AT_rich Low_complexity Low_complexity 1 24 0 42 48 0 0 chr3 102005717 102005780 -125518798 + AT_rich Low_complexity Low_complexity 1 63 0 12187 189 19 9 chr3 102006144 102007309 -125517269 + L1PB1 LINE L1 2523 3675 -2476 195 114 0 0 chr3 102007309 102007344 -125517234 + (CAAA)n Simple_repeat Simple_repeat 3 37 0 12187 189 19 9 chr3 102007344 102009775 -125514803 + L1PB1 LINE L1 3675 6150 -1 27 49 0 0 chr3 102011451 102011492 -125513086 + AT_rich Low_complexity Low_complexity 1 41 0 1078 81 0 25 chr3 102012038 102012199 -125512379 - L1PA7 LINE L1 0 6154 5998 569 43 0 0 chr3 102012199 102012268 -125512310 + L1P2 LINE L1 5591 5659 -495 2223 112 3 0 chr3 102012648 102012960 -125511618 + AluSp SINE Alu 1 313 0 218 250 198 9 chr3 102013654 102013770 -125510808 - MIR SINE MIR -5 257 120 698 226 79 17 chr3 102014713 102014890 -125509688 + MER5A DNA MER1_type 2 189 0 270 266 21 32 chr3 102014890 102014984 -125509594 - MLT1J2 LTR MaLR -6 444 352 324 189 105 53 chr3 102015142 102015237 -125509341 - MLT1J1 LTR MaLR -344 102 3 23 0 0 0 chr3 102015543 102015566 -125509012 + AT_rich Low_complexity Low_complexity 1 23 0 221 286 59 5 chr3 102017341 102017440 -125507138 - MIR SINE MIR -65 143 34 22 0 0 0 chr3 102018517 102018539 -125506039 + AT_rich Low_complexity Low_complexity 1 22 0 373 80 0 0 chr3 102019775 102019825 -125504753 - MADE1 DNA Mariner -1 79 30 258 105 0 0 chr3 102019840 102019878 -125504700 + (TG)n Simple_repeat Simple_repeat 2 39 0 27 29 0 0 chr3 102020471 102020505 -125504073 + AT_rich Low_complexity Low_complexity 1 34 0 22 80 0 0 chr3 102020760 102020810 -125503768 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chr3 102021110 102021146 -125503432 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr3 102024641 102024664 -125499914 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr3 102025102 102025131 -125499447 + AT_rich Low_complexity Low_complexity 1 29 0 723 194 59 54 chr3 102025374 102025596 -125498982 - L1MD3 LINE L1 0 7995 7773 379 316 62 47 chr3 102025598 102025854 -125498724 - MLT1L LTR MaLR -332 283 24 2337 177 7 25 chr3 102025910 102026351 -125498227 + Tigger2a DNA MER2_type 1 433 -1 453 338 42 25 chr3 102027230 102027470 -125497108 + MIR SINE MIR 18 261 -1 2042 133 0 3 chr3 102027719 102028012 -125496566 - AluSx SINE Alu -20 292 1 207 176 0 0 chr3 102028590 102028624 -125495954 + (CATA)n Simple_repeat Simple_repeat 4 37 0 1150 257 69 45 chr3 102028624 102029087 -125495491 + L1ME3 LINE L1 5665 6138 -24 21 0 0 0 chr3 102029107 102029128 -125495450 + AT_rich Low_complexity Low_complexity 1 21 0 541 189 182 0 chr3 102029215 102029374 -125495204 - MER53 DNA DNA 0 189 2 1864 125 0 17 chr3 102030632 102030920 -125493658 - AluSg SINE Alu -16 294 12 1926 136 17 3 chr3 102031077 102031379 -125493199 - AluSp SINE Alu -7 306 1 205 208 0 21 chr3 102031647 102031695 -125492883 + L2 LINE L2 3222 3268 -4 23 0 0 0 chr3 102032654 102032677 -125491901 + AT_rich Low_complexity Low_complexity 1 23 0 519 278 61 19 chr3 102032689 102032952 -125491626 + L1ME LINE L1 4916 5189 -957 2640 35 0 0 chr3 102032964 102033275 -125491303 + AluY SINE Alu 1 311 0 294 330 52 34 chr3 102033509 102033776 -125490802 + L1ME LINE L1 5450 5721 -441 305 263 74 0 chr3 102035016 102035111 -125489467 - MER58 DNA MER1_type 0 2420 2319 248 220 0 0 chr3 102035516 102035566 -125489012 - MER113 DNA MER1_type? -470 51 2 2142 131 100 3 chr3 102036390 102036780 -125487798 - MSTA LTR MaLR 0 428 1 236 321 69 31 chr3 102036982 102037141 -125487437 - MLT1K LTR MaLR -10 578 414 264 197 45 15 chr3 102037914 102037980 -125486598 - MLT1K LTR MaLR -4 584 517 35 54 0 0 chr3 102038232 102038288 -125486290 + AT_rich Low_complexity Low_complexity 1 56 0 25000 144 8 16 chr3 102038513 102043848 -125480730 - L1PA12 LINE L1 0 7569 1493 639 230 16 63 chr3 102044237 102044428 -125480150 + LTR41 LTR ERVL 6 187 -586 297 311 19 71 chr3 102044622 102044889 -125479689 + LTR41 LTR ERVL 510 762 -11 262 273 61 10 chr3 102044892 102044991 -125479587 + MIR SINE MIR 131 234 -28 1023 305 45 30 chr3 102046036 102046528 -125478050 - LTR33 LTR ERVL -20 501 3 180 0 0 0 chr3 102047361 102047381 -125477197 + (A)n Simple_repeat Simple_repeat 1 20 0 311 112 45 0 chr3 102048127 102048216 -125476362 + (TA)n Simple_repeat Simple_repeat 1 93 0 303 275 44 0 chr3 102048216 102048307 -125476271 - L1MC4 LINE L1 -1337 6705 6611 31 58 0 0 chr3 102048307 102048359 -125476219 + AT_rich Low_complexity Low_complexity 1 52 0 227 196 18 0 chr3 102049728 102049784 -125474794 + HAL1 LINE L1 961 1017 -1490 8377 218 14 42 chr3 102049865 102049992 -125474586 + L1PA16 LINE L1 2938 3067 -3099 1478 54 0 0 chr3 102049992 102050177 -125474401 - L1PA5 LINE L1 -2 6152 5968 8377 218 14 42 chr3 102050177 102053368 -125471210 + L1PA16 LINE L1 3067 6157 -9 21 0 0 0 chr3 102053530 102053551 -125471027 + AT_rich Low_complexity Low_complexity 1 21 0 1385 73 0 17 chr3 102053557 102053736 -125470842 + AluY SINE Alu 1 176 -135 304 276 70 32 chr3 102054258 102054414 -125470164 + HAL1 LINE L1 1497 1658 -849 1884 211 35 10 chr3 102054416 102055018 -125469560 + L1ME3 LINE L1 5031 5652 -707 914 337 38 11 chr3 102055037 102055408 -125469170 - L2 LINE L2 -891 2423 2043 243 271 98 0 chr3 102055428 102055561 -125469017 - L1M4 LINE L1 -2241 3905 3760 374 328 90 55 chr3 102055703 102056227 -125468351 + L1MC/D LINE L1 4736 5277 -869 390 347 60 20 chr3 102056257 102056702 -125467876 + L1MC/D LINE L1 5308 5782 -388 26 30 0 0 chr3 102057196 102057229 -125467349 + AT_rich Low_complexity Low_complexity 1 33 0 17776 30 0 1 chr3 102057229 102060130 -125464448 - L1PA3 LINE L1 -3 6152 3254 3579 153 8 73 chr3 102060132 102060485 -125464093 - LTR1 LTR ERV1 0 785 411 2573 43 0 0 chr3 102060485 102060785 -125463793 - AluY SINE Alu -2 309 10 3579 153 8 73 chr3 102060785 102061263 -125463315 - LTR1 LTR ERV1 -374 411 8 270 333 43 24 chr3 102061417 102061672 -125462906 + L1ME3 LINE L1 5670 5929 -233 208 340 0 0 chr3 102062137 102062231 -125462347 + A-rich Low_complexity Low_complexity 1 94 0 236 281 22 34 chr3 102063161 102063250 -125461328 - MIR SINE MIR -91 171 84 357 43 0 0 chr3 102063947 102063994 -125460584 + (TA)n Simple_repeat Simple_repeat 2 48 0 225 240 0 0 chr3 102066325 102066375 -125458203 - MIR SINE MIR -65 197 148 610 171 0 17 chr3 102066382 102066499 -125458079 - FRAM SINE Alu -4 172 58 413 212 81 10 chr3 102066499 102066598 -125457980 - MIR SINE MIR -122 140 35 285 272 68 0 chr3 102067488 102067591 -125456987 - L1MC4a LINE L1 -1884 5924 5815 35 0 0 0 chr3 102068966 102069001 -125455577 + AT_rich Low_complexity Low_complexity 1 35 0 2154 113 0 7 chr3 102069004 102069314 -125455264 - AluSc SINE Alu -1 308 1 306 293 107 45 chr3 102070079 102070297 -125454281 + L1ME2 LINE L1 5641 5885 -277 966 287 40 15 chr3 102070352 102070780 -125453798 + L1ME LINE L1 5333 5773 -389 1008 331 16 11 chr3 102070782 102071150 -125453428 + LTR16C LTR ERVL 14 383 -108 733 343 55 26 chr3 102071320 102071737 -125452841 + HERV16 LTR ERVL 358 786 -4210 1003 305 37 77 chr3 102071764 102072561 -125452017 + L2 LINE L2 2554 3313 0 195 129 0 0 chr3 102072575 102072606 -125451972 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 567 346 22 13 chr3 102072967 102073198 -125451380 + MIR SINE MIR 11 243 -19 264 271 0 0 chr3 102073453 102073512 -125451066 - MIR SINE MIR -131 131 73 200 133 0 0 chr3 102073872 102073902 -125450676 + MIR SINE MIR 88 117 -91 202 327 79 0 chr3 102074049 102074150 -125450428 + L2 LINE L2 3204 3312 -1 1242 126 0 0 chr3 102076109 102076283 -125448295 - AluSg/x SINE Alu -18 291 118 297 0 0 0 chr3 102076630 102076663 -125447915 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr3 102076663 102076684 -125447894 + AT_rich Low_complexity Low_complexity 1 21 0 1211 239 19 4 chr3 102076684 102076952 -125447626 - MER57B LTR ERV1 -162 272 1 13950 152 17 14 chr3 102076965 102079350 -125445228 + Tigger1 DNA MER2_type 26 2417 -1 372 162 29 0 chr3 102079476 102079544 -125445034 + Tigger2 DNA MER2_type 1 70 -2648 2341 162 19 12 chr3 102079544 102079957 -125444621 + Tigger2 DNA MER2_type 2303 2718 0 29 47 0 0 chr3 102080666 102080709 -125443869 + AT_rich Low_complexity Low_complexity 1 43 0 890 273 107 37 chr3 102081583 102081993 -125442585 - L1MDa LINE L1 -6083 457 19 1529 106 154 26 chr3 102082696 102083005 -125441573 - AluSg SINE Alu 0 344 1 26 0 0 0 chr3 102083256 102083282 -125441296 + AT_rich Low_complexity Low_complexity 1 26 0 21 95 0 0 chr3 102084116 102084179 -125440399 + AT_rich Low_complexity Low_complexity 1 63 0 270 73 0 0 chr3 102084565 102084606 -125439972 + L1PA8 LINE L1 6125 6165 -7 22 99 0 0 chr3 102085005 102085076 -125439502 + AT_rich Low_complexity Low_complexity 1 71 0 23 0 0 0 chr3 102085139 102085162 -125439416 + AT_rich Low_complexity Low_complexity 1 23 0 367 302 9 9 chr3 102088545 102088651 -125435927 + L2 LINE L2 3208 3313 0 295 263 257 26 chr3 102090308 102090460 -125434118 - MIR SINE MIR -71 191 5 681 216 84 113 chr3 102090774 102090796 -125433782 - L1MC5 LINE L1 -465 7496 7475 4098 118 22 2 chr3 102090796 102091434 -125433144 - L1PA16 LINE L1 -1 6165 5515 1531 182 14 70 chr3 102091444 102091813 -125432765 - MER7A DNA MER2_type 0 346 1 681 216 84 113 chr3 102091813 102092293 -125432285 - L1MC5 LINE L1 -495 7466 6998 252 158 35 0 chr3 102092317 102092374 -125432204 + L1PA11 LINE L1 1 59 -7522 10145 216 41 48 chr3 102092380 102093701 -125430877 + L1PA11 LINE L1 1309 2638 -4946 2137 163 20 6 chr3 102093701 102094058 -125430520 - THE1B LTR MaLR 0 364 3 10145 216 41 48 chr3 102094058 102096197 -125428381 + L1PA11 LINE L1 2638 4761 -2823 1173 164 13 0 chr3 102096197 102096423 -125428155 - L1P LINE L1 -2087 4059 3831 11330 143 38 12 chr3 102096491 102098397 -125426181 + L1PA11 LINE L1 4760 6776 -836 213 39 0 0 chr3 102098397 102098423 -125426155 + (CA)n Simple_repeat Simple_repeat 2 27 0 11330 143 38 12 chr3 102098423 102099278 -125425300 + L1PA11 LINE L1 6776 7607 -5 534 281 45 35 chr3 102100522 102100810 -125423768 + L1MCc LINE L1 20 310 -6113 1339 266 45 38 chr3 102100877 102101812 -125422766 + L1MCc LINE L1 2574 3487 -3454 1043 251 3 51 chr3 102101852 102102147 -125422431 + MLT1A2 LTR MaLR 94 374 0 982 265 80 55 chr3 102102152 102103001 -125421577 + L1MCc LINE L1 3496 4365 -2576 320 263 10 0 chr3 102102999 102103098 -125421480 + L1P LINE L1 3133 3232 -2914 * 21 36 0 0 chr3 102103108 102103136 -125421442 + AT_rich Low_complexity Low_complexity 1 28 0 1583 213 43 17 chr3 102103136 102103554 -125421024 - L1P LINE L1 -2481 3665 3237 868 226 0 0 chr3 102103566 102103778 -125420800 + L1MCc LINE L1 5051 5262 -1679 2897 141 61 10 chr3 102103787 102104297 -125420281 + L1PA15 LINE L1 5625 6160 -5 1143 334 56 59 chr3 102104363 102105528 -125419050 + L1M4 LINE L1 3635 4795 -1351 687 75 0 0 chr3 102105626 102105650 -125418928 + (TTCC)n Simple_repeat Simple_repeat 1 118 0 687 75 0 0 chr3 102105650 102105744 -125418834 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 39 50 0 0 chr3 102106019 102106079 -125418499 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr3 102107440 102107461 -125417117 + AT_rich Low_complexity Low_complexity 1 21 0 331 309 77 24 chr3 102109025 102109193 -125415385 + MIR SINE MIR 68 244 -18 198 191 64 21 chr3 102109159 102109206 -125415372 + L2 LINE L2 3256 3304 -9 * 22 0 0 0 chr3 102110294 102110316 -125414262 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr3 102110877 102110920 -125413658 + AT_rich Low_complexity Low_complexity 1 43 0 646 293 114 57 chr3 102111153 102111593 -125412985 + L1MCc LINE L1 124 588 -5835 1577 193 0 4 chr3 102111905 102112170 -125412408 + AluJb SINE Alu 25 288 -24 579 260 30 0 chr3 102112191 102112360 -125412218 + L1MCc LINE L1 1120 1293 -5130 955 232 137 0 chr3 102112363 102112626 -125411952 + L1ME1 LINE L1 5837 6135 -31 25 0 0 0 chr3 102112653 102112678 -125411900 + AT_rich Low_complexity Low_complexity 1 25 0 262 182 45 0 chr3 102112798 102112864 -125411714 - MER103 DNA DNA -43 123 55 246 277 9 45 chr3 102113212 102113324 -125411254 - MER45C DNA AcHobo -1 952 845 2224 198 15 2 chr3 102113324 102113718 -125410860 + L1MB3 LINE L1 29 427 -5957 1893 195 12 79 chr3 102113739 102114467 -125410111 + L1MB3 LINE L1 5064 5754 -662 * 16952 178 33 9 chr3 102114464 102117600 -125406978 + L1MA1 LINE L1 12 3223 -4342 11058 162 21 14 chr3 102117588 102121713 -125402865 + L1MA1 LINE L1 3568 7715 -6 * 3591 139 21 30 chr3 102121734 102122412 -125402166 + L1MB3 LINE L1 5748 6419 0 415 287 33 20 chr3 102122418 102122568 -125402010 - MER45C DNA AcHobo -85 868 717 240 341 24 0 chr3 102122699 102122781 -125401797 - MER45C DNA AcHobo -481 472 389 29 0 0 0 chr3 102123308 102123337 -125401241 + AT_rich Low_complexity Low_complexity 1 29 0 24 91 0 0 chr3 102123446 102123512 -125401066 + AT_rich Low_complexity Low_complexity 1 66 0 7257 25 0 0 chr3 102124084 102124947 -125399631 - L1PA3 LINE L1 -902 5244 4382 7397 33 2 9 chr3 102124947 102125852 -125398726 + L1PA3 LINE L1 5254 6152 -3 228 149 0 0 chr3 102125855 102125902 -125398676 + (A)n Simple_repeat Simple_repeat 1 47 0 277 368 43 0 chr3 102125928 102126045 -125398533 + MIR3 SINE MIR 54 175 -33 281 269 32 43 chr3 102126386 102126479 -125398099 - L2 LINE L2 0 3313 3222 186 133 0 0 chr3 102127394 102127424 -125397154 + (A)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr3 102127478 102127499 -125397079 + AT_rich Low_complexity Low_complexity 1 21 0 206 274 21 21 chr3 102129834 102129929 -125394649 + (TATATG)n Simple_repeat Simple_repeat 5 99 0 21 0 0 0 chr3 102129930 102129951 -125394627 + AT_rich Low_complexity Low_complexity 1 21 0 1140 185 200 11 chr3 102130299 102130559 -125394019 - AluSx SINE Alu -3 309 1 228 153 28 28 chr3 102130578 102130650 -125393928 + CT-rich Low_complexity Low_complexity 4 75 0 420 286 148 30 chr3 102131351 102131554 -125393024 - MLT1J1 LTR MaLR -216 230 4 219 146 0 0 chr3 102131554 102131595 -125392983 + (TC)n Simple_repeat Simple_repeat 2 42 0 1571 201 0 3 chr3 102131598 102131882 -125392696 - AluJo SINE Alu -29 283 1 669 238 66 0 chr3 102132032 102132183 -125392395 + MER58A DNA MER1_type 1 161 0 318 316 68 0 chr3 102132939 102133072 -125391506 - MIR SINE MIR -40 222 81 237 346 130 22 chr3 102133129 102133314 -125391264 - L2 LINE L2 -175 3138 2934 232 222 0 0 chr3 102134601 102134646 -125389932 + (CA)n Simple_repeat Simple_repeat 2 46 0 1093 164 227 144 chr3 102134647 102135004 -125389574 + MER7C DNA MER2_type 2 423 -2605 1576 152 4 0 chr3 102135004 102135247 -125389331 + AluSx SINE Alu 50 293 -19 1093 164 227 144 chr3 102135247 102135443 -125389135 + MER7C DNA MER2_type 423 601 -1 420 20 0 0 chr3 102135444 102135493 -125389085 + (TG)n Simple_repeat Simple_repeat 2 50 0 187 298 0 0 chr3 102135495 102135542 -125389036 + L2 LINE L2 3214 3260 -12 25 31 0 0 chr3 102135738 102135770 -125388808 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr3 102136384 102136410 -125388168 + AT_rich Low_complexity Low_complexity 1 26 0 216 67 0 0 chr3 102136964 102136994 -125387584 + (CA)n Simple_repeat Simple_repeat 1 30 0 2825 107 12 2 chr3 102137673 102138092 -125386486 + L1PB1 LINE L1 5373 5795 -356 2366 119 0 21 chr3 102138132 102138510 -125386068 + L1PB1 LINE L1 5782 6151 0 1223 82 11 6 chr3 102138545 102138727 -125385851 - L1PA4 LINE L1 -8 6147 5965 2007 145 3 0 chr3 102139697 102139994 -125384584 - AluSx SINE Alu -11 301 4 278 86 0 0 chr3 102140150 102140185 -125384393 + U2 snRNA snRNA 1 35 -153 188 182 0 0 chr3 102140646 102140679 -125383899 + L2 LINE L2 3281 3313 0 2560 138 31 0 chr3 102141639 102142052 -125382526 - MSTB LTR MaLR 0 426 1 2408 46 0 4 chr3 102142073 102142386 -125382192 + AluY SINE Alu 1 312 0 2189 115 0 0 chr3 102142393 102142688 -125381890 + AluSx SINE Alu 1 295 -17 2088 114 10 0 chr3 102143591 102143888 -125380690 + AluSx SINE Alu 1 300 -12 324 0 0 0 chr3 102144281 102144317 -125380261 + (TG)n Simple_repeat Simple_repeat 2 37 0 1745 129 11 14 chr3 102144622 102144909 -125379669 + AluSq SINE Alu 1 286 -27 21 0 0 0 chr3 102144915 102144936 -125379642 + AT_rich Low_complexity Low_complexity 1 21 0 1156 122 0 0 chr3 102144962 102145118 -125379460 - AluSg/x SINE Alu -24 286 131 21 71 0 0 chr3 102145121 102145163 -125379415 + AT_rich Low_complexity Low_complexity 1 42 0 429 240 60 13 chr3 102145388 102145538 -125379040 + L1MC5 LINE L1 6960 7116 -845 2737 128 98 42 chr3 102145542 102146042 -125378536 - MER1A DNA MER1_type 0 529 2 277 178 208 50 chr3 102146085 102146186 -125378392 + L1MC5 LINE L1 7165 7281 -680 247 139 0 0 chr3 102146335 102146371 -125378207 + Alu SINE Alu 56 91 -212 589 146 69 15 chr3 102146472 102146602 -125377976 + AluSp/q SINE Alu 156 292 -21 1165 119 28 0 chr3 102146604 102146781 -125377797 + AluSg/x SINE Alu 121 302 -8 2044 139 0 0 chr3 102149272 102149575 -125375003 - AluSx SINE Alu -9 303 1 261 0 0 0 chr3 102150931 102150960 -125373618 + (TAAA)n Simple_repeat Simple_repeat 3 31 0 1605 234 33 11 chr3 102151096 102151581 -125372997 - L1M4 LINE L1 -1698 4448 3956 2142 121 3 0 chr3 102151581 102151879 -125372699 - AluSx SINE Alu -13 299 1 1882 236 25 0 chr3 102151893 102152380 -125372198 - L1P LINE L1 -2451 3695 3197 * 4494 171 23 4 chr3 102152370 102153950 -125370628 + L1PA13 LINE L1 4325 5935 -228 234 0 0 0 chr3 102154818 102154844 -125369734 + (TA)n Simple_repeat Simple_repeat 1 26 0 225 0 0 0 chr3 102154843 102154868 -125369710 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 206 287 0 8 chr3 102154911 102155033 -125369545 + (TA)n Simple_repeat Simple_repeat 2 122 0 21 0 0 0 chr3 102155384 102155405 -125369173 + AT_rich Low_complexity Low_complexity 1 21 0 1665 93 0 5 chr3 102155682 102155898 -125368680 - AluY SINE Alu -93 218 4 1638 181 43 32 chr3 102156377 102156748 -125367830 + THE1C LTR MaLR 1 375 0 33 66 0 0 chr3 102158994 102159055 -125365523 + AT_rich Low_complexity Low_complexity 1 61 0 8302 180 34 3 chr3 102159648 102162591 -125361987 + L1PBa LINE L1 1342 4378 -2484 42329 42 24 1 chr3 102162691 102168114 -125356464 - L1P1 LINE L1 -607 5548 1 2495 83 39 6 chr3 102168485 102168846 -125355732 + THE1C LTR MaLR 3 375 0 603 181 58 7 chr3 102169723 102169878 -125354700 - L1MA7 LINE L1 -1 6290 6128 1283 134 23 5 chr3 102169878 102170094 -125354484 + L1M2 LINE L1 5581 5800 -491 238 304 0 0 chr3 102170517 102170586 -125353992 - L1ME2 LINE L1 -30 6134 6066 1810 168 134 8 chr3 102170871 102171251 -125353327 + MSTA LTR MaLR 1 428 0 809 121 14 21 chr3 102171424 102171564 -125353014 - THE1C LTR MaLR 0 375 237 2327 87 3 6 chr3 102172353 102172664 -125351914 - AluY SINE Alu -1 310 1 900 187 22 6 chr3 102172781 102172963 -125351615 + L1PA16 LINE L1 5979 6163 -3 21 36 0 0 chr3 102172963 102172991 -125351587 + AT_rich Low_complexity Low_complexity 1 28 0 267 312 290 0 chr3 102174563 102174701 -125349877 + MER5B DNA MER1_type 1 178 0 381 298 53 58 chr3 102174996 102175204 -125349374 - MLT1J1 LTR MaLR -6 440 234 231 315 79 8 chr3 102175236 102175363 -125349215 - MLT1J2 LTR MaLR -267 183 48 182 188 0 21 chr3 102175703 102175751 -125348827 + (TG)n Simple_repeat Simple_repeat 2 48 0 1723 186 0 7 chr3 102175958 102176249 -125348329 + AluJo SINE Alu 1 289 -23 1929 132 0 7 chr3 102176400 102176704 -125347874 - L1PB1 LINE L1 -2 6149 5848 299 270 89 43 chr3 102177832 102178118 -125346460 - L2 LINE L2 0 3313 2948 246 269 123 108 chr3 102178341 102178757 -125345821 - L2 LINE L2 -594 2720 2299 720 190 0 38 chr3 102178778 102178936 -125345642 - MER6B DNA MER2_type -1 209 58 2652 192 14 55 chr3 102178976 102179554 -125345024 - MLT2B3 LTR ERVL 0 554 1 31 0 0 0 chr3 102180052 102180083 -125344495 + AT_rich Low_complexity Low_complexity 1 31 0 1478 189 91 16 chr3 102180083 102180401 -125344177 - L1PA16 LINE L1 -9 6157 5816 330 171 37 24 chr3 102180505 102180587 -125343991 - L1PA16 LINE L1 -714 5589 5507 * 4868 218 19 19 chr3 102180563 102180712 -125343866 + L1P4 LINE L1 4085 4232 -1934 2256 107 3 0 chr3 102180712 102181021 -125343557 - AluSq SINE Alu -3 310 1 4868 218 19 19 chr3 102181021 102182277 -125342301 + L1P4 LINE L1 4232 5480 -686 1553 251 34 75 chr3 102182391 102182595 -125341983 - LTR40a LTR ERVL 0 519 308 5920 27 1 3 chr3 102182595 102183297 -125341281 + L1PA4 LINE L1 5455 6155 0 1553 251 34 75 chr3 102183297 102183626 -125340952 - LTR40a LTR ERVL -211 308 8 498 357 114 19 chr3 102183984 102184500 -125340078 - L2 LINE L2 -2212 1102 538 198 327 59 20 chr3 102184742 102184843 -125339735 + L3 LINE CR1 1040 1144 -433 360 64 0 0 chr3 102184924 102184971 -125339607 + (CA)n Simple_repeat Simple_repeat 2 48 0 348 24 0 0 chr3 102185010 102185051 -125339527 + (CA)n Simple_repeat Simple_repeat 2 42 0 7745 203 8 7 chr3 102185559 102187827 -125336751 + L1PB1 LINE L1 3526 5792 -359 282 261 23 0 chr3 102187816 102187904 -125336674 + L1MC4 LINE L1 6613 6702 -1340 * 2258 142 3 0 chr3 102187962 102188322 -125336256 + L1PB1 LINE L1 5783 6143 -8 322 188 21 0 chr3 102188876 102188972 -125335606 + (TA)n Simple_repeat Simple_repeat 1 98 0 1301 108 15 0 chr3 102190183 102190386 -125334192 - L1PA13 LINE L1 0 6163 5958 350 391 65 0 chr3 102190616 102190754 -125333824 + MIR3 SINE MIR 20 166 -42 249 132 57 0 chr3 102190990 102191043 -125333535 - L1MA3 LINE L1 -1 6304 6249 470 285 7 7 chr3 102191217 102191354 -125333224 - MLT1I LTR MaLR -2 407 271 241 325 25 17 chr3 102191447 102191567 -125333011 - MLT1I LTR MaLR -288 121 1 25 31 0 0 chr3 102191821 102191853 -125332725 + AT_rich Low_complexity Low_complexity 1 32 0 321 338 83 19 chr3 102192933 102193149 -125331429 - MIR SINE MIR -6 256 27 3331 169 38 11 chr3 102193522 102194177 -125330401 - L1MA4A LINE L1 -6 6297 5625 3868 134 74 20 chr3 102194621 102195320 -125329258 + L1PA16 LINE L1 5420 6156 -10 412 298 32 27 chr3 102195809 102195997 -125328581 - MLT1J2 LTR MaLR -14 436 248 1857 142 4 0 chr3 102196218 102196486 -125328092 - AluSq SINE Alu -44 269 1 231 191 0 0 chr3 102197254 102197296 -125327282 + (CA)n Simple_repeat Simple_repeat 2 43 0 825 217 0 29 chr3 102198338 102198513 -125326065 - FRAM SINE Alu -4 172 3 189 318 91 40 chr3 102199064 102199240 -125325338 + L2 LINE L2 1913 2097 -1217 35815 97 7 28 chr3 102199326 102205558 -125319020 + L1PA6 LINE L1 11 6154 0 201 121 0 0 chr3 102207739 102207772 -125316806 + (CA)n Simple_repeat Simple_repeat 2 34 0 24 32 0 0 chr3 102208050 102208081 -125316497 + AT_rich Low_complexity Low_complexity 1 31 0 728 248 69 38 chr3 102208864 102209291 -125315287 + MSTD LTR MaLR 20 394 -2 184 340 143 14 chr3 102211057 102211204 -125313374 - L2 LINE L2 -8 3264 3099 258 356 10 0 chr3 102211507 102211608 -125312970 + MLT1J2 LTR MaLR 344 445 -5 637 203 140 0 chr3 102211908 102212051 -125312527 - MIR SINE MIR -2 260 98 264 264 111 49 chr3 102213309 102213334 -125311244 - LTR33A LTR ERVL -7 516 494 2835 6 0 10 chr3 102213334 102213648 -125310930 + AluYa5 SINE Alu 1 311 0 264 264 111 49 chr3 102213648 102213766 -125310812 - LTR33A LTR ERVL -29 494 364 294 350 43 29 chr3 102213841 102214118 -125310460 - MERVL LTR ERVL -2673 2812 2633 234 0 0 0 chr3 102214697 102214723 -125309855 + (CAA)n Simple_repeat Simple_repeat 2 27 0 322 296 10 10 chr3 102214736 102214834 -125309744 + GA-rich Low_complexity Low_complexity 3 100 0 234 321 151 19 chr3 102214834 102214993 -125309585 - LTR33A LTR ERVL -337 186 7 357 0 0 0 chr3 102215049 102215093 -125309485 + L1PA3 LINE L1 6109 6152 -3 2138 107 3 3 chr3 102216222 102216511 -125308067 - AluSc SINE Alu -20 289 1 541 343 6 0 chr3 102217094 102217260 -125307318 - MIR SINE MIR -7 255 89 207 341 33 0 chr3 102217701 102217792 -125306786 - L2 LINE L2 0 3272 3179 352 280 108 6 chr3 102217930 102218087 -125306491 - Charlie8 DNA MER1_type -2137 280 108 2527 22 0 4 chr3 102218095 102218517 -125306061 - L1PA3 LINE L1 -593 5562 5144 5233 42 0 0 chr3 102218517 102219142 -125305436 + L1PA3 LINE L1 5530 6155 0 231 283 76 43 chr3 102219198 102219290 -125305288 + MIR3 SINE MIR 83 177 -31 219 36 0 0 chr3 102221305 102221333 -125303245 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 324 0 0 0 chr3 102221332 102221368 -125303210 + (CA)n Simple_repeat Simple_repeat 1 36 0 210 292 28 0 chr3 102221371 102221443 -125303135 + GA-rich Low_complexity Low_complexity 1 74 0 308 236 64 45 chr3 102221617 102221727 -125302851 + MIR SINE MIR 150 261 -1 455 338 88 4 chr3 102222073 102222301 -125302277 + MIR SINE MIR 5 251 -11 208 376 0 40 chr3 102222479 102222580 -125301998 - L2 LINE L2 0 3272 3176 322 368 26 41 chr3 102222765 102223070 -125301508 - L2 LINE L2 -296 3017 2717 587 331 87 28 chr3 102223202 102223525 -125301053 - LTR16B LTR ERVL -114 350 9 382 305 47 56 chr3 102223635 102223868 -125300710 + L2 LINE L2 3036 3266 -47 292 279 68 56 chr3 102223939 102224100 -125300478 - L2 LINE L2 -846 2468 2306 28 29 0 0 chr3 102225151 102225186 -125299392 + AT_rich Low_complexity Low_complexity 1 35 0 213 333 24 0 chr3 102225250 102225334 -125299244 - L3 LINE CR1 -855 722 637 1504 45 0 15 chr3 102225806 102226005 -125298573 + L1PA6 LINE L1 5959 6154 0 249 394 19 31 chr3 102226089 102226249 -125298329 + MIR3 SINE MIR 15 172 -36 207 256 24 12 chr3 102226297 102226379 -125298199 + (TA)n Simple_repeat Simple_repeat 1 83 0 21 0 0 0 chr3 102226787 102226808 -125297770 + AT_rich Low_complexity Low_complexity 1 21 0 200 174 0 43 chr3 102227105 102227151 -125297427 + A-rich Low_complexity Low_complexity 4 47 0 570 113 42 35 chr3 102227152 102227294 -125297284 + GA-rich Low_complexity Low_complexity 4 146 0 21 36 0 0 chr3 102229413 102229441 -125295137 + AT_rich Low_complexity Low_complexity 1 28 0 216 250 163 43 chr3 102229601 102229693 -125294885 + L2 LINE L2 3170 3272 0 1400 125 3 169 chr3 102232142 102232509 -125292069 - AluSx SINE Alu -6 306 1 21 36 0 0 chr3 102232671 102232699 -125291879 + AT_rich Low_complexity Low_complexity 1 28 0 333 340 80 39 chr3 102232797 102233109 -125291469 + L1ME LINE L1 5338 5662 -459 6149 195 23 11 chr3 102233252 102235096 -125289482 + L1MC1 LINE L1 4442 6314 -19 28 48 0 0 chr3 102235096 102235138 -125289440 + AT_rich Low_complexity Low_complexity 1 42 0 712 299 80 29 chr3 102235199 102236032 -125288546 - L1ME LINE L1 -4657 1423 547 200 246 33 16 chr3 102236691 102236752 -125287826 + L2 LINE L2 3251 3312 -1 315 407 123 13 chr3 102237686 102237922 -125286656 + L2 LINE L2 3011 3272 0 320 339 23 23 chr3 102239403 102239533 -125285045 - MER5A DNA MER1_type -59 130 1 444 37 0 0 chr3 102239590 102239644 -125284934 + (CA)n Simple_repeat Simple_repeat 1 54 0 730 178 20 7 chr3 102239862 102240014 -125284564 - L1MA9 LINE L1 0 6312 6159 297 247 0 13 chr3 102240022 102240099 -125284479 - L1MB1 LINE L1 -103 6065 5990 417 96 36 48 chr3 102240104 102240187 -125284391 + L1MB1 LINE L1 6084 6165 -3 37 23 0 0 chr3 102240786 102240830 -125283748 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr3 102241097 102241118 -125283460 + AT_rich Low_complexity Low_complexity 1 21 0 301 390 35 0 chr3 102243021 102243190 -125281388 - MIR3 SINE MIR -16 192 18 27 62 0 0 chr3 102243514 102243562 -125281016 + AT_rich Low_complexity Low_complexity 1 48 0 810 159 116 42 chr3 102244335 102244524 -125280054 + MER3 DNA MER1_type 1 203 -6 200 191 0 0 chr3 102245381 102245423 -125279155 + GA-rich Low_complexity Low_complexity 2 43 0 25 51 0 0 chr3 102246060 102246099 -125278479 + AT_rich Low_complexity Low_complexity 1 39 0 305 295 7 86 chr3 102247019 102247158 -125277420 + MIR SINE MIR 108 235 -27 265 98 0 33 chr3 102247492 102247553 -125277025 + (TTTTG)n Simple_repeat Simple_repeat 2 60 0 596 317 118 12 chr3 102248976 102249298 -125275280 + LTR16A LTR ERVL 95 450 0 235 266 101 25 chr3 102249299 102249378 -125275200 - MLT1K LTR MaLR -251 337 253 219 281 105 35 chr3 102249964 102250078 -125274500 + L2 LINE L2 3191 3312 -1 2030 148 0 7 chr3 102250185 102250483 -125274095 + AluSx SINE Alu 1 296 -16 5294 137 21 50 chr3 102250666 102252140 -125272438 + L1PA13 LINE L1 4685 6096 -67 255 375 81 15 chr3 102252350 102252486 -125272092 - MIR3 SINE MIR -32 176 32 787 292 36 18 chr3 102252543 102252879 -125271699 + L1ME2 LINE L1 5779 6120 -44 19421 178 29 10 chr3 102254015 102256581 -125267997 + L1MA2 LINE L1 16 2532 -5033 1717 178 41 19 chr3 102256581 102256946 -125267632 + THE1C LTR MaLR 1 373 -2 8793 144 16 40 chr3 102256951 102258567 -125266011 + THE1C-int LTR MaLR 4 1580 0 1552 172 93 12 chr3 102258567 102258910 -125265668 + THE1C LTR MaLR 1 371 -4 19421 178 29 10 chr3 102258910 102259950 -125264628 + L1MA2 LINE L1 2534 3697 -3868 11031 219 30 10 chr3 102259950 102263135 -125261443 + L1MA2 LINE L1 3929 7187 -537 833 216 6 0 chr3 102263136 102263298 -125261280 + AluJb SINE Alu 137 299 -13 3066 153 2 9 chr3 102263316 102263870 -125260708 + L1MA2 LINE L1 7174 7723 0 2277 47 0 0 chr3 102263873 102264150 -125260428 + AluY SINE Alu 1 277 -34 2051 195 75 27 chr3 102265475 102265957 -125258621 - MLT1D LTR MaLR 0 505 1 2024 137 45 25 chr3 102266080 102266437 -125258141 + THE1B LTR MaLR 1 364 0 861 248 44 8 chr3 102266668 102266923 -125257655 + L1ME1 LINE L1 5798 6058 -108 * 11262 174 15 32 chr3 102266890 102266923 -125257655 - L1P4 LINE L1 -565 5598 5566 2418 143 52 5 chr3 102266923 102267370 -125257208 - L1PA13 LINE L1 0 6163 5696 11262 174 15 32 chr3 102267370 102267616 -125256962 - L1P4 LINE L1 -597 5566 5317 2390 106 3 0 chr3 102267616 102267965 -125256613 + L1PB2 LINE L1 5791 6140 -11 11262 174 15 32 chr3 102267965 102268004 -125256574 - L1P4 LINE L1 -846 5317 5279 3510 104 9 20 chr3 102268004 102268543 -125256035 + L1PA13 LINE L1 5628 6160 -3 11262 174 15 32 chr3 102268543 102270800 -125253778 - L1P4 LINE L1 -884 5279 3073 185 83 28 0 chr3 102270800 102270836 -125253742 + (TTAG)n Simple_repeat Simple_repeat 3 39 0 11262 174 15 32 chr3 102270836 102271119 -125253459 - L1P4 LINE L1 -3090 3073 2787 188 374 90 18 chr3 102271501 102271667 -125252911 + L2 LINE L2 2804 2981 -291 2411 74 0 16 chr3 102272301 102272612 -125251966 + AluY SINE Alu 1 306 -5 183 235 148 70 chr3 102273184 102273299 -125251279 - L2 LINE L2 -1066 2248 2125 22789 49 3 2 chr3 102274036 102276921 -125247657 - L1P LINE L1 -1846 4300 1414 7138 49 3 0 chr3 102276922 102277934 -125246644 + L1PA4 LINE L1 5141 6155 0 1941 147 4 0 chr3 102278400 102278679 -125245899 + AluSq SINE Alu 1 280 -33 204 40 0 0 chr3 102278686 102278711 -125245867 + (TAAAA)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr3 102279271 102279293 -125245285 + AT_rich Low_complexity Low_complexity 1 22 0 719 279 87 35 chr3 102279594 102279938 -125244640 - MLT1I LTR MaLR -44 365 4 234 91 0 0 chr3 102280005 102280038 -125244540 + (TA)n Simple_repeat Simple_repeat 2 34 0 10570 199 49 10 chr3 102280073 102282877 -125241701 + L1M1 LINE L1 18 3620 -3945 7443 198 53 51 chr3 102283039 102284989 -125239589 + L1M1 LINE L1 3673 5629 -1936 2208 109 0 13 chr3 102284989 102285300 -125239278 - AluSc SINE Alu 0 309 3 7443 198 53 51 chr3 102285300 102285484 -125239094 + L1M1 LINE L1 5629 5811 -1754 1800 168 24 32 chr3 102285486 102285860 -125238718 - THE1C LTR MaLR -4 371 1 9519 126 59 4 chr3 102285860 102287358 -125237220 - THE1C-int LTR MaLR 0 1580 1 1767 162 35 24 chr3 102287358 102287729 -125236849 - THE1C LTR MaLR 0 375 1 4745 173 13 17 chr3 102287731 102288908 -125235670 + L1M1 LINE L1 5807 6980 -743 368 264 50 0 chr3 102289054 102289175 -125235403 - L1MCa LINE L1 -3568 2858 2732 272 271 125 21 chr3 102289210 102289354 -125235224 - L1MCa LINE L1 -4987 1439 1281 403 301 121 39 chr3 102289356 102289712 -125234866 - L1MCa LINE L1 -4983 1433 1049 5553 154 21 34 chr3 102290092 102291150 -125233428 + L1MC1 LINE L1 5284 6327 -6 1862 196 6 69 chr3 102292185 102292689 -125231889 - L1M3 LINE L1 -863 5985 5514 1135 194 11 50 chr3 102292689 102292758 -125231820 + L1M3 LINE L1 5976 6046 -824 2521 114 11 3 chr3 102292758 102293116 -125231462 - THE1B LTR MaLR -1 363 3 1135 194 11 50 chr3 102293116 102293325 -125231253 + L1M3 LINE L1 6046 6243 -627 1268 105 20 11 chr3 102293329 102293541 -125231037 - MLT2A2 LTR ERVL 0 453 293 939 219 45 5 chr3 102293573 102293626 -125230952 + L1MA10 LINE L1 6100 6149 -185 453 19 0 0 chr3 102293626 102293680 -125230898 + (CA)n Simple_repeat Simple_repeat 2 55 0 939 219 45 5 chr3 102293680 102293850 -125230728 + L1MA10 LINE L1 6149 6332 -2 747 186 26 0 chr3 102344137 102344293 -125180285 - L1 LINE L1 -1555 5293 5134 * 7427 208 43 26 chr3 102344283 102346143 -125178435 - L1 LINE L1 -2060 4788 2961 2049 148 0 0 chr3 102346143 102346446 -125178132 - AluSx SINE Alu -9 303 1 7427 208 43 26 chr3 102346446 102346848 -125177730 - L1 LINE L1 -3887 2961 2465 2250 79 0 0 chr3 102346848 102347139 -125177439 - AluY SINE Alu -20 291 1 7427 208 43 26 chr3 102347139 102347418 -125177160 - L1 LINE L1 -4383 2465 2192 374 272 22 0 chr3 102347406 102347498 -125177080 - L1 LINE L1 -5851 998 905 * 539 259 24 29 chr3 102347599 102347769 -125176809 + MSTA LTR MaLR 203 371 -57 180 0 0 0 chr3 102347769 102347789 -125176789 + (G)n Simple_repeat Simple_repeat 1 20 0 1341 59 1 50 chr3 102347793 102348139 -125176439 - AluY SINE Alu 0 311 19 424 105 0 53 chr3 102348139 102348215 -125176363 + MSTA LTR MaLR 356 427 -1 23 54 0 0 chr3 102348338 102348375 -125176203 + AT_rich Low_complexity Low_complexity 1 37 0 21 57 0 0 chr3 102348457 102348492 -125176086 + AT_rich Low_complexity Low_complexity 1 35 0 35 54 0 0 chr3 102348769 102348825 -125175753 + AT_rich Low_complexity Low_complexity 1 56 0 1744 108 89 4 chr3 102348825 102349084 -125175494 - AluY SINE Alu -28 283 3 24 77 0 0 chr3 102350663 102350715 -125173863 + AT_rich Low_complexity Low_complexity 1 52 0 532 338 75 13 chr3 102351350 102351578 -125173000 - MIR SINE MIR -20 242 1 1766 166 7 0 chr3 102351783 102352067 -125172511 - AluSx SINE Alu -24 288 3 31 0 0 0 chr3 102352500 102352531 -125172047 + AT_rich Low_complexity Low_complexity 1 31 0 234 0 0 0 chr3 102355472 102355498 -125169080 + (A)n Simple_repeat Simple_repeat 1 26 0 311 228 13 13 chr3 102355772 102355851 -125168727 + L1MA4 LINE L1 5834 5912 -388 1499 195 69 3 chr3 102356114 102356432 -125168146 + MER44D DNA MER2_type 1 609 0 322 247 27 0 chr3 102356462 102356535 -125168043 - MER2 DNA MER2_type -1 344 270 204 235 0 0 chr3 102356600 102356651 -125167927 + T-rich Low_complexity Low_complexity 1 51 0 1821 151 16 26 chr3 102356654 102356965 -125167613 - AluJo SINE Alu -1 311 4 837 210 40 11 chr3 102357013 102357189 -125167389 - MER2 DNA MER2_type -164 181 1 279 0 0 0 chr3 102358568 102358599 -125165979 + (ATG)n Simple_repeat Simple_repeat 2 32 0 1836 138 0 14 chr3 102358607 102358897 -125165681 - AluSx SINE Alu -26 286 1 530 320 22 0 chr3 102359422 102359600 -125164978 - MLT1L LTR MaLR -335 280 99 350 331 15 31 chr3 102361811 102361941 -125162637 - MIR SINE MIR -115 147 20 1022 294 52 79 chr3 102362324 102362766 -125161812 + MLT1H LTR MaLR 119 548 -1 24 32 0 0 chr3 102364385 102364416 -125160162 + AT_rich Low_complexity Low_complexity 1 31 0 415 317 56 39 chr3 102364522 102364806 -125159772 + L1M4 LINE L1 5111 5399 -747 334 198 111 14 chr3 102365124 102365196 -125159382 - MLT1H LTR MaLR -363 186 109 2125 105 26 0 chr3 102365200 102365504 -125159074 + AluSx SINE Alu 1 312 0 7539 199 29 5 chr3 102366147 102367584 -125156994 + L1M1 LINE L1 15 1486 -6079 824 160 24 53 chr3 102367584 102367753 -125156825 + Tigger7 DNA MER2_type 2324 2487 0 565 243 0 42 chr3 102368214 102368358 -125156220 + AluJb SINE Alu 86 223 -89 183 80 0 0 chr3 102368381 102368406 -125156172 + (A)n Simple_repeat Simple_repeat 1 25 0 1564 166 0 34 chr3 102368406 102368702 -125155876 + AluJb SINE Alu 3 288 -24 234 362 130 11 chr3 102370722 102370907 -125153671 + MIR SINE MIR 49 255 -7 23 68 0 0 chr3 102371219 102371263 -125153315 + AT_rich Low_complexity Low_complexity 1 44 0 1272 211 18 18 chr3 102372979 102373259 -125151319 + AluJo SINE Alu 2 281 -31 823 142 28 6 chr3 102373273 102373449 -125151129 + GA-rich Low_complexity Low_complexity 1 180 0 270 0 0 0 chr3 102373572 102373602 -125150976 + (CA)n Simple_repeat Simple_repeat 2 31 0 10955 149 18 17 chr3 102375287 102377178 -125147400 + Tigger1 DNA MER2_type 1 1893 -525 2249 97 3 0 chr3 102380250 102380549 -125144029 + AluSx SINE Alu 11 310 -2 2840 165 14 14 chr3 102381013 102381527 -125143051 + Tigger1 DNA MER2_type 1905 2418 0 226 271 24 35 chr3 102383233 102383318 -125141260 + MIR SINE MIR 176 259 -3 690 145 36 6 chr3 102383544 102383710 -125140868 + GA-rich Low_complexity Low_complexity 3 173 0 22 0 0 0 chr3 102384622 102384644 -125139934 + AT_rich Low_complexity Low_complexity 1 22 0 324 0 0 0 chr3 102385956 102385992 -125138586 + (TG)n Simple_repeat Simple_repeat 2 37 0 1611 224 22 3 chr3 102386523 102386881 -125137697 + MLT1A1 LTR MaLR 1 365 0 2167 197 61 103 chr3 102387204 102388021 -125136557 + LTR1B LTR ERV1 1 783 -43 929 329 41 3 chr3 102388111 102388427 -125136151 - L2 LINE L2 -1870 1444 1117 363 276 0 46 chr3 102388755 102388842 -125135736 + L2 LINE L2 3190 3272 0 553 0 14 27 chr3 102389980 102390054 -125134524 + (TTTC)n Simple_repeat Simple_repeat 4 76 0 6728 223 38 5 chr3 102391112 102392621 -125131957 + L1MB3 LINE L1 21 1579 -4805 3686 190 32 32 chr3 102392621 102392968 -125131610 - Tigger1 DNA MER2_type 0 2418 2072 189 0 0 0 chr3 102392968 102392989 -125131589 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 3686 190 32 32 chr3 102392989 102393453 -125131125 - Tigger1 DNA MER2_type -345 2073 1607 5431 185 21 12 chr3 102393464 102397869 -125126709 - L1MA2 LINE L1 0 7723 3073 842 75 33 0 chr3 102397869 102397989 -125126589 + L1PA7 LINE L1 6031 6154 0 6022 268 29 19 chr3 102398014 102398515 -125126063 + L1MB3 LINE L1 3724 4218 -2201 342 0 0 0 chr3 102398515 102398553 -125126025 + (TA)n Simple_repeat Simple_repeat 2 39 0 6022 268 29 19 chr3 102398553 102400016 -125124562 + L1MB3 LINE L1 4218 5665 -754 234 0 0 0 chr3 102400016 102400042 -125124536 + (CAA)n Simple_repeat Simple_repeat 2 27 0 6022 268 29 19 chr3 102400042 102400325 -125124253 + L1MB3 LINE L1 5665 6001 -418 2243 104 0 0 chr3 102400325 102400622 -125123956 - AluSg SINE Alu -13 297 1 6022 268 29 19 chr3 102400622 102400649 -125123929 + L1MB3 LINE L1 6001 6026 -393 332 284 23 0 chr3 102400680 102400768 -125123810 - L1MC4 LINE L1 -1339 6703 6614 1858 187 16 0 chr3 102400783 102401162 -125123416 + L1MB3 LINE L1 6025 6409 -10 403 320 141 35 chr3 102401339 102401651 -125122927 + L2 LINE L2 2969 3313 0 326 354 41 14 chr3 102403473 102403620 -125120958 - MER5A DNA MER1_type 0 189 39 251 286 16 0 chr3 102403628 102403691 -125120887 + Zaphod DNA AcHobo 1 64 -3967 272 318 53 30 chr3 102404370 102404502 -125120076 - L2 LINE L2 -4 3309 3175 24 67 0 0 chr3 102405336 102405381 -125119197 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr3 102405404 102405427 -125119151 + AT_rich Low_complexity Low_complexity 1 23 0 209 287 69 40 chr3 102406222 102406323 -125118255 - MER5B DNA MER1_type -15 174 66 26 101 0 0 chr3 102406545 102406634 -125117944 + AT_rich Low_complexity Low_complexity 1 89 0 6274 78 4 33 chr3 102406634 102407705 -125116873 + L1PA7 LINE L1 5096 6141 -13 1963 148 26 17 chr3 102408076 102408427 -125116151 + MSTA LTR MaLR 1 354 -74 243 0 0 0 chr3 102409055 102409082 -125115496 + (A)n Simple_repeat Simple_repeat 1 27 0 402 341 24 24 chr3 102409239 102409406 -125115172 - L2 LINE L2 -534 2780 2614 26 0 0 0 chr3 102409940 102409966 -125114612 + AT_rich Low_complexity Low_complexity 1 26 0 1052 172 4 106 chr3 102410253 102410509 -125114069 - MER30 DNA MER1_type 0 230 1 45 0 0 0 chr3 102410934 102410979 -125113599 + AT_rich Low_complexity Low_complexity 1 45 0 2054 129 0 0 chr3 102410979 102411273 -125113305 - AluSx SINE Alu -18 294 1 234 150 0 0 chr3 102412296 102412336 -125112242 + (TG)n Simple_repeat Simple_repeat 2 41 0 204 125 0 0 chr3 102413282 102413314 -125111264 + (T)n Simple_repeat Simple_repeat 1 32 0 903 48 71 6 chr3 102413465 102413633 -125110945 + CT-rich Low_complexity Low_complexity 2 180 0 309 26 0 0 chr3 102413671 102413709 -125110869 + (TG)n Simple_repeat Simple_repeat 1 38 0 406 245 95 11 chr3 102414626 102414807 -125109771 + MIR SINE MIR 63 258 -4 1098 268 65 48 chr3 102415379 102415730 -125108848 + L1MB8 LINE L1 49 405 -6454 * 15444 79 13 1 chr3 102415729 102417798 -125106780 + L1P LINE L1 2 2094 -4052 4429 30 0 0 chr3 102417798 102418322 -125106256 + L1PA5 LINE L1 5623 6146 -8 21 0 0 0 chr3 102418322 102418343 -125106235 + AT_rich Low_complexity Low_complexity 1 21 0 960 328 22 27 chr3 102418345 102418711 -125105867 + L1MB8 LINE L1 389 752 -6107 2689 240 38 49 chr3 102418714 102419800 -125104778 + L1MB8 LINE L1 930 1980 -4979 2105 117 0 0 chr3 102419800 102420101 -125104477 + AluSx SINE Alu 1 301 0 2689 240 38 49 chr3 102420101 102420593 -125103985 + L1MB8 LINE L1 1980 2476 -4483 * 3716 218 61 60 chr3 102420566 102423122 -125101456 + L1MB8 LINE L1 4434 6988 -1 30 27 0 0 chr3 102424246 102424283 -125100295 + AT_rich Low_complexity Low_complexity 1 37 0 29 28 0 0 chr3 102424433 102424469 -125100109 + AT_rich Low_complexity Low_complexity 1 36 0 356 0 23 0 chr3 102425094 102425138 -125099440 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 328 111 0 2 chr3 102425140 102425374 -125099204 - AluSc SINE Alu -22 277 6 872 353 4 0 chr3 102425720 102425969 -125098609 - L1M2 LINE L1 -5987 862 613 1849 244 65 2 chr3 102426049 102426495 -125098083 - L1M2 LINE L1 -6373 476 3 2806 32 0 12 chr3 102426562 102426904 -125097674 - L1PA5 LINE L1 0 6154 5817 651 294 69 42 chr3 102427092 102427500 -125097078 - HAL1b LINE L1 -790 558 140 22 0 0 0 chr3 102428068 102428090 -125096488 + AT_rich Low_complexity Low_complexity 1 22 0 204 235 20 0 chr3 102428341 102428392 -125096186 + CT-rich Low_complexity Low_complexity 3 54 0 3404 157 28 18 chr3 102428490 102429102 -125095476 + LTR31 LTR ERV1 2 619 0 230 326 70 35 chr3 102429280 102429452 -125095126 + MIR SINE MIR 5 182 -80 1116 181 28 19 chr3 102433394 102433610 -125090968 + MER20 DNA MER1_type 2 219 0 210 309 41 52 chr3 102434450 102434547 -125090031 - MIR3 SINE MIR -2 206 111 25 0 0 0 chr3 102434663 102434688 -125089890 + AT_rich Low_complexity Low_complexity 1 25 0 1284 284 62 25 chr3 102435194 102435679 -125088899 + ERVL LTR ERVL 179 681 -4315 391 309 95 0 chr3 102435708 102435834 -125088744 + ERVL LTR ERVL 732 869 -4127 293 319 69 47 chr3 102435979 102436255 -125088323 + ERVL LTR ERVL 5085 5366 -398 1110 281 102 8 chr3 102436392 102436755 -125087823 + LTR16A LTR ERVL 25 421 -29 297 227 0 0 chr3 102436759 102436825 -125087753 + LTR16A LTR ERVL 385 450 0 201 295 156 16 chr3 102437340 102437462 -125087116 - MER5A DNA MER1_type -50 139 1 1588 284 28 9 chr3 102438238 102438427 -125086151 - L1M4 LINE L1 -2964 3182 2998 2200 117 0 0 chr3 102438427 102438726 -125085852 + AluSq SINE Alu 1 299 -14 1588 284 28 9 chr3 102438726 102439211 -125085367 - L1M4 LINE L1 -3148 2998 2495 191 277 31 0 chr3 102439213 102439278 -125085300 - MIR SINE MIR -124 138 72 1567 213 40 35 chr3 102439419 102439822 -125084756 + MLT1C LTR MaLR 59 463 -4 186 43 0 0 chr3 102439946 102439969 -125084609 + (TG)n Simple_repeat Simple_repeat 2 24 0 356 251 91 70 chr3 102440084 102440271 -125084307 + L2 LINE L2 3122 3312 -1 267 411 68 5 chr3 102442942 102443149 -125081429 - MIR SINE MIR -13 249 30 1121 218 74 100 chr3 102446708 102447207 -125077371 - MLT1D LTR MaLR 0 505 20 254 29 29 0 chr3 102449451 102449486 -125075092 + (TTATA)n Simple_repeat Simple_repeat 1 36 0 2383 82 3 0 chr3 102450431 102450736 -125073842 + AluSq SINE Alu 1 306 -7 216 286 0 0 chr3 102451087 102451143 -125073435 - L2 LINE L2 0 3272 3217 1798 210 27 24 chr3 102452951 102453361 -125071217 - LTR52 LTR ERVL -2 419 9 6367 272 75 65 chr3 102453367 102454258 -125070320 - LTR52-int LTR ERVL 0 3556 2675 1243 217 42 35 chr3 102454258 102454544 -125070034 - AluJo SINE Alu -22 290 3 6367 272 75 65 chr3 102454544 102456402 -125068176 - LTR52-int LTR ERVL -881 2675 782 2080 231 56 15 chr3 102456403 102457019 -125067559 - LTR52-int LTR ERVL -2884 672 3 1452 225 39 22 chr3 102457022 102457431 -125067147 - LTR52 LTR ERVL -4 417 2 200 184 0 0 chr3 102457442 102457480 -125067098 + (TG)n Simple_repeat Simple_repeat 2 39 0 254 311 100 104 chr3 102457584 102457825 -125066753 + MIR SINE MIR 20 259 -3 1973 165 0 9 chr3 102458448 102458763 -125065815 - AluJb SINE Alu 0 312 1 511 377 29 0 chr3 102458831 102459070 -125065508 + LTR16C LTR ERVL 51 296 -195 407 323 52 26 chr3 102459279 102459508 -125065070 + MIR SINE MIR 27 261 -1 237 200 120 0 chr3 102460476 102460526 -125064052 - MIR3 SINE MIR -28 180 125 21 82 0 0 chr3 102460799 102460848 -125063730 + AT_rich Low_complexity Low_complexity 1 49 0 492 119 28 18 chr3 102462503 102462612 -125061966 + (TAGA)n Simple_repeat Simple_repeat 1 110 0 224 182 0 18 chr3 102463162 102463217 -125061361 + (CA)n Simple_repeat Simple_repeat 1 54 0 334 351 8 15 chr3 102464275 102464409 -125060169 - L2 LINE L2 -14 3299 3167 2870 118 2 23 chr3 102464802 102465067 -125059511 - L1PA13 LINE L1 0 6163 5911 2485 47 3 25 chr3 102465067 102465385 -125059193 - AluY SINE Alu 0 311 1 2870 118 2 23 chr3 102465385 102465592 -125058986 - L1PA13 LINE L1 -252 5911 5701 27 0 0 0 chr3 102465936 102465963 -125058615 + AT_rich Low_complexity Low_complexity 1 27 0 307 328 39 44 chr3 102466079 102466259 -125058319 - MER5A DNA MER1_type -1 188 10 282 56 0 0 chr3 102466573 102466609 -125057969 + (GA)n Simple_repeat Simple_repeat 1 36 0 317 311 97 16 chr3 102466995 102467243 -125057335 + L3b LINE CR1 1125 1392 -191 2616 43 0 3 chr3 102467302 102467607 -125056971 - AluY SINE Alu -7 304 1 23 0 0 0 chr3 102468102 102468125 -125056453 + AT_rich Low_complexity Low_complexity 1 23 0 7292 32 4 0 chr3 102469313 102470274 -125054304 - L1PA4 LINE L1 -2 6153 5178 201 39 0 0 chr3 102470292 102470318 -125054260 + (T)n Simple_repeat Simple_repeat 1 26 0 7851 43 1 0 chr3 102470318 102471292 -125053286 - L1PA4 LINE L1 -964 5182 4208 5858 50 12 5 chr3 102471284 102472037 -125052541 + L1P LINE L1 3383 4140 -2006 * 27 49 0 0 chr3 102472614 102472655 -125051923 + AT_rich Low_complexity Low_complexity 1 41 0 198 209 0 0 chr3 102474418 102474461 -125050117 + (TATG)n Simple_repeat Simple_repeat 3 45 0 22928 91 11 1 chr3 102474688 102478769 -125045809 + L1PA7 LINE L1 2024 6142 -12 32 81 0 0 chr3 102479009 102479083 -125045495 + AT_rich Low_complexity Low_complexity 1 74 0 347 298 32 8 chr3 102479084 102479208 -125045370 - L2 LINE L2 0 3313 3187 753 306 144 11 chr3 102479315 102479773 -125044805 - LTR33A LTR ERVL -2 521 3 303 296 31 127 chr3 102479787 102480208 -125044370 + L2 LINE L2 2230 2607 -707 2589 198 33 0 chr3 102480208 102480759 -125043819 - L1MC1 LINE L1 0 6333 5765 303 296 31 127 chr3 102480759 102480787 -125043791 + L2 LINE L2 2607 2636 -678 568 316 190 11 chr3 102480787 102481145 -125043433 + MLT1G1 LTR MaLR 1 422 -173 1850 203 10 20 chr3 102481154 102481558 -125043020 + L1MB8 LINE L1 5587 5986 -192 363 60 0 0 chr3 102481564 102481614 -125042964 + (TG)n Simple_repeat Simple_repeat 1 50 0 483 204 15 38 chr3 102481614 102481746 -125042832 + L1MB8 LINE L1 6049 6177 -1 577 336 78 41 chr3 102481747 102482338 -125042240 + L2 LINE L2 2702 3307 -6 636 286 127 5 chr3 102483338 102483558 -125041020 - MIR SINE MIR -14 248 2 21 0 0 0 chr3 102483576 102483597 -125040981 + AT_rich Low_complexity Low_complexity 1 21 0 303 321 90 0 chr3 102483647 102483781 -125040797 + MIR SINE MIR 63 208 -54 578 299 50 37 chr3 102483860 102484192 -125040386 - MLT1I LTR MaLR -13 396 5 360 0 0 0 chr3 102485262 102485302 -125039276 + (TG)n Simple_repeat Simple_repeat 2 41 0 902 304 58 42 chr3 102485492 102486066 -125038512 + L2 LINE L2 2716 3312 -1 189 195 0 0 chr3 102486699 102486740 -125037838 + (CA)n Simple_repeat Simple_repeat 2 42 0 240 241 0 0 chr3 102486755 102486834 -125037744 + (TA)n Simple_repeat Simple_repeat 2 80 0 254 257 178 41 chr3 102487154 102487492 -125037086 - L1ME4a LINE L1 -63 6058 5675 25 65 0 0 chr3 102488765 102488811 -125035767 + AT_rich Low_complexity Low_complexity 1 46 0 25 23 0 23 chr3 102489298 102489309 -125035269 + AT_rich Low_complexity Low_complexity 1 11 -31 3051 165 19 5 chr3 102489309 102489892 -125034686 + L1MA4 LINE L1 5710 6300 0 25 23 0 23 chr3 102489892 102489923 -125034655 + AT_rich Low_complexity Low_complexity 11 42 0 581 263 50 0 chr3 102489928 102490107 -125034471 + L1MB7 LINE L1 4857 5044 -1102 1829 217 5 8 chr3 102490162 102490559 -125034019 + L1MB7 LINE L1 5459 5854 -330 1730 272 93 11 chr3 102490564 102491678 -125032900 + L1ME2 LINE L1 4890 6100 -64 258 298 50 37 chr3 102491584 102491745 -125032833 + L1MA10 LINE L1 6169 6331 -3 * 1110 133 0 6 chr3 102492139 102492304 -125032274 - AluSg/x SINE Alu -15 297 134 7171 47 2 2 chr3 102492304 102493644 -125030934 - L1PA5 LINE L1 -4 6150 4810 203 274 123 0 chr3 102494077 102494150 -125030428 - MIR SINE MIR -122 140 59 6554 54 143 6 chr3 102545621 102546559 -124978019 + L1P LINE L1 4 1069 -5077 2372 104 3 0 chr3 102547347 102547656 -124976922 - AluSx SINE Alu -2 310 1 23 33 0 0 chr3 102547872 102547902 -124976676 + AT_rich Low_complexity Low_complexity 1 30 0 24 32 0 0 chr3 102547936 102547967 -124976611 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 102549092 102549114 -124975464 + AT_rich Low_complexity Low_complexity 1 22 0 1272 194 46 39 chr3 102549341 102549624 -124974954 + AluJo SINE Alu 1 285 -27 247 284 49 29 chr3 102550213 102550315 -124974263 + MIR3 SINE MIR 100 203 -5 270 291 26 8 chr3 102550353 102550470 -124974108 - MLT1L LTR MaLR -3 612 494 285 258 56 22 chr3 102550729 102550818 -124973760 - MLT1L LTR MaLR -523 92 1 1669 70 5 0 chr3 102551104 102551343 -124973235 - AluY SINE Alu 0 305 66 2301 101 3 0 chr3 102551652 102551959 -124972619 + AluSg SINE Alu 1 308 -2 1864 153 10 16 chr3 102553848 102554156 -124970422 + AluSx SINE Alu 1 306 -6 22 56 0 0 chr3 102554243 102554279 -124970299 + AT_rich Low_complexity Low_complexity 1 36 0 285 287 11 23 chr3 102554742 102554829 -124969749 - MIR3 SINE MIR -14 194 109 188 419 57 8 chr3 102554846 102554970 -124969608 - L2 LINE L2 0 3272 3143 2128 179 6 0 chr3 102555364 102555727 -124968851 - MLT1A1 LTR MaLR 0 365 1 769 171 20 0 chr3 102556535 102556681 -124967897 - L1P LINE L1 -890 5256 5108 242 313 62 35 chr3 102559912 102560056 -124964522 - L2 LINE L2 -7 3306 3159 222 369 60 30 chr3 102560508 102560809 -124963769 - L2 LINE L2 -896 2418 2109 221 232 84 65 chr3 102561125 102561280 -124963298 + L2 LINE L2 1902 2059 -1255 318 262 29 29 chr3 102561898 102562046 -124962532 + MLT1I LTR MaLR 72 218 -191 369 43 0 0 chr3 102565076 102565123 -124959455 + (CA)n Simple_repeat Simple_repeat 2 48 0 189 234 85 0 chr3 102566833 102566880 -124957698 + L3 LINE CR1 1405 1455 -122 313 249 85 73 chr3 102567644 102567821 -124956757 - L1MC4 LINE L1 -30 8012 7834 31987 26 2 1 chr3 102567838 102572789 -124951789 - L1PA2 LINE L1 0 6155 1199 2035 62 89 0 chr3 102572900 102573191 -124951387 - L1PA7 LINE L1 0 6154 5838 1340 225 78 103 chr3 102573192 102573811 -124950767 - LTR1B LTR ERV1 -223 603 1 2047 178 35 66 chr3 102573899 102574325 -124950253 - MLT1-int LTR MaLR 0 1371 959 370 339 39 0 chr3 102574551 102574681 -124949897 + L2 LINE L2 3179 3313 0 317 111 0 0 chr3 102574841 102574904 -124949674 - L1MA2 LINE L1 -2 6302 6240 21 0 0 0 chr3 102575405 102575426 -124949152 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 102575458 102575484 -124949094 + AT_rich Low_complexity Low_complexity 1 26 0 687 278 53 5 chr3 102576070 102576257 -124948321 - MIR SINE MIR -63 199 4 23 33 0 0 chr3 102576464 102576494 -124948084 + AT_rich Low_complexity Low_complexity 1 30 0 25 51 0 0 chr3 102577660 102577699 -124946879 + AT_rich Low_complexity Low_complexity 1 39 0 437 260 83 42 chr3 102579042 102579220 -124945358 - MIR SINE MIR -17 245 60 473 344 33 0 chr3 102579220 102579342 -124945236 + MER5A DNA MER1_type 1 126 -63 548 192 0 93 chr3 102579349 102579500 -124945078 - FLAM_C SINE Alu -1 142 6 1927 26 4 0 chr3 102579523 102579757 -124944821 - L1PA2 LINE L1 0 6155 5921 192 263 0 0 chr3 102579772 102579810 -124944768 + MER5A DNA MER1_type 151 188 -1 193 314 12 47 chr3 102580073 102580159 -124944419 + MIR SINE MIR 180 262 0 937 135 37 6 chr3 102580743 102580906 -124943672 - Tigger2 DNA MER2_type -189 2529 2362 285 276 0 35 chr3 102581596 102581683 -124942895 + GA-rich Low_complexity Low_complexity 3 86 0 2513 157 16 25 chr3 102581861 102582294 -124942284 + Tigger2a DNA MER2_type 6 434 0 36 53 0 0 chr3 102582348 102582405 -124942173 + AT_rich Low_complexity Low_complexity 1 57 0 214 373 55 9 chr3 102583161 102583271 -124941307 + MIR SINE MIR 26 140 -68 2808 218 39 2 chr3 102583667 102584237 -124940341 + MER82 DNA MER2_type 62 652 -1 391 347 70 5 chr3 102584988 102585187 -124939391 - MIR SINE MIR -31 231 20 294 326 0 0 chr3 102585832 102585918 -124938660 - L2 LINE L2 -1 3312 3227 21 89 0 0 chr3 102587499 102587555 -124937023 + AT_rich Low_complexity Low_complexity 1 56 0 1261 208 33 0 chr3 102588273 102588518 -124936060 + AluJo SINE Alu 1 253 -59 42 57 0 0 chr3 102588643 102588713 -124935865 + AT_rich Low_complexity Low_complexity 1 70 0 512 288 80 0 chr3 102590258 102590470 -124934108 + L2 LINE L2 2434 2662 -652 21 36 0 0 chr3 102590985 102591013 -124933565 + AT_rich Low_complexity Low_complexity 1 28 0 1084 212 32 5 chr3 102591197 102591414 -124933164 + MER58A DNA MER1_type 2 224 0 2006 147 0 0 chr3 102591438 102591757 -124932821 + AluSx SINE Alu 3 312 0 1753 121 0 90 chr3 102591759 102592081 -124932497 + AluSg SINE Alu 1 293 -17 1731 94 34 84 chr3 102592083 102592431 -124932147 + AluSg SINE Alu 1 333 0 495 296 117 34 chr3 102592935 102593259 -124931319 + L2 LINE L2 2348 2698 -616 1286 281 88 79 chr3 102593259 102594481 -124930097 + L1MC4 LINE L1 6792 8024 -18 313 260 26 0 chr3 102594516 102594593 -124929985 + L2 LINE L2 2701 2779 -535 559 244 90 93 chr3 102594613 102594958 -124929620 + L1MD3 LINE L1 5996 7978 -17 251 299 184 0 chr3 102594962 102595109 -124929469 + L2 LINE L2 2782 2955 -359 241 317 100 25 chr3 102595164 102595284 -124929294 + L2 LINE L2 3180 3308 -5 4298 185 34 37 chr3 102595382 102596505 -124928073 - L1MA9 LINE L1 -38 6274 5158 483 329 134 39 chr3 102597057 102597446 -124927132 + L2 LINE L2 2888 3313 0 582 51 13 0 chr3 102597635 102597714 -124926864 + MADE1 DNA Mariner 1 80 0 200 189 0 0 chr3 102597726 102597763 -124926815 + (CA)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr3 102598001 102598024 -124926554 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 102599537 102599558 -124925020 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 102601411 102601432 -124923146 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 102601742 102601763 -124922815 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr3 102602346 102602380 -124922198 + (TG)n Simple_repeat Simple_repeat 1 34 0 333 0 0 0 chr3 102603325 102603362 -124921216 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 1802 132 7 11 chr3 102603364 102603645 -124920933 - AluSx SINE Alu -32 280 1 330 263 71 20 chr3 102603655 102603754 -124920824 - MIR SINE MIR -111 151 48 24 32 0 0 chr3 102603942 102603973 -124920605 + AT_rich Low_complexity Low_complexity 1 31 0 201 333 90 45 chr3 102604388 102604565 -124920013 - L2 LINE L2 -5 3308 3124 311 294 0 0 chr3 102604609 102604677 -124919901 - L2 LINE L2 -8 3305 3238 391 329 23 68 chr3 102606908 102607127 -124917451 + L2 LINE L2 2684 2892 -422 1958 124 19 0 chr3 102607165 102607472 -124917106 + AluSq SINE Alu 1 313 0 1285 295 100 36 chr3 102607625 102607999 -124916579 - L2 LINE L2 -1 3312 2963 2168 166 62 33 chr3 102607999 102608439 -124916139 - LOR1a LTR ERV1 0 497 40 378 0 0 0 chr3 102608439 102608481 -124916097 + (TG)n Simple_repeat Simple_repeat 2 43 0 2168 166 62 33 chr3 102608481 102608523 -124916055 - LOR1a LTR ERV1 -457 40 1 1285 295 100 36 chr3 102608523 102609055 -124915523 - L2 LINE L2 -350 2963 2330 245 296 38 45 chr3 102609221 102609353 -124915225 + L2 LINE L2 3107 3237 -76 517 242 86 90 chr3 102609474 102609730 -124914848 - MIR SINE MIR 0 262 8 487 285 70 6 chr3 102611327 102611485 -124913093 - MIR SINE MIR -22 240 73 386 316 25 25 chr3 102613435 102613593 -124910985 + MIR3 SINE MIR 51 208 0 22 0 0 0 chr3 102614275 102614297 -124910281 + AT_rich Low_complexity Low_complexity 1 22 0 1344 202 91 19 chr3 102614484 102614791 -124909787 - MER2 DNA MER2_type 0 345 17 1415 237 22 30 chr3 102615127 102615697 -124908881 - L1ME LINE L1 -471 5764 5198 1006 244 74 40 chr3 102615741 102615813 -124908765 - MER58B DNA MER1_type -2080 340 272 1780 171 49 33 chr3 102615813 102616181 -124908397 + THE1C LTR MaLR 1 374 -1 1006 244 74 40 chr3 102616181 102616432 -124908146 - MER58B DNA MER1_type -2148 272 6 943 219 25 4 chr3 102616438 102616675 -124907903 - L1ME LINE L1 -1065 5150 4909 1483 254 71 10 chr3 102616878 102617371 -124907207 - L1ME LINE L1 -5258 1138 616 3101 144 43 10 chr3 102617389 102617903 -124906675 - Tigger1 DNA MER2_type -4 2414 1884 1023 155 5 31 chr3 102617903 102618097 -124906481 - AluSg/x SINE Alu -8 304 116 11015 148 22 6 chr3 102618197 102620030 -124904548 - Tigger1 DNA MER2_type -551 1867 5 2182 132 0 0 chr3 102620032 102620343 -124904235 + AluSx SINE Alu 1 311 -1 1540 252 47 71 chr3 102620345 102620937 -124903641 - L1ME LINE L1 -5806 590 13 338 329 143 14 chr3 102621791 102622007 -124902571 - MIR SINE MIR 0 262 19 27 0 0 0 chr3 102622250 102622277 -124902301 + AT_rich Low_complexity Low_complexity 1 27 0 229 164 27 0 chr3 102622694 102622767 -124901811 + (CA)n Simple_repeat Simple_repeat 2 76 0 183 309 0 0 chr3 102622801 102622843 -124901735 - L2 LINE L2 -21 3251 3210 352 309 10 0 chr3 102622895 102622992 -124901586 - MIR SINE MIR -161 101 4 564 294 42 42 chr3 102623295 102623557 -124901021 - MARNA DNA Mariner -216 370 109 298 283 33 8 chr3 102623480 102623600 -124900978 + MARNA DNA Mariner 398 520 -66 * 24 67 0 0 chr3 102624347 102624392 -124900186 + AT_rich Low_complexity Low_complexity 1 45 0 409 99 0 28 chr3 102625162 102625233 -124899345 - Alu SINE Alu -4 308 240 599 291 107 67 chr3 102625955 102626610 -124897968 + L2 LINE L2 2647 3313 0 195 129 0 0 chr3 102627716 102627747 -124896831 + (CAT)n Simple_repeat Simple_repeat 3 33 0 658 346 25 0 chr3 102627764 102628004 -124896574 - MIR SINE MIR -8 254 9 1547 170 55 4 chr3 102629269 102629540 -124895038 - AluJb SINE Alu -27 285 1 457 301 60 21 chr3 102630651 102630933 -124893645 - L2 LINE L2 -1218 2096 1804 687 273 137 13 chr3 102632591 102632818 -124891760 + MIR SINE MIR 8 262 0 342 202 61 0 chr3 102634059 102634158 -124890420 - L1M4 LINE L1 -1886 4329 4225 * 482 282 79 41 chr3 102634148 102634265 -124890313 - L1MEc LINE L1 -3631 2584 2473 3524 120 0 0 chr3 102634265 102634790 -124889788 - L1PA13 LINE L1 -1 6162 5638 482 282 79 41 chr3 102634790 102635430 -124889148 - L1MEc LINE L1 -3742 2473 1836 22 88 0 0 chr3 102635585 102635642 -124888936 + AT_rich Low_complexity Low_complexity 1 57 0 236 214 34 34 chr3 102636498 102636507 -124888071 + (TATATG)n Simple_repeat Simple_repeat 5 13 -80 2101 159 14 6 chr3 102636507 102636852 -124887726 - MER7A DNA MER2_type 0 346 1 236 214 34 34 chr3 102636852 102636931 -124887647 + (TATATG)n Simple_repeat Simple_repeat 12 93 0 23 0 0 0 chr3 102637297 102637320 -124887258 + AT_rich Low_complexity Low_complexity 1 23 0 249 108 0 0 chr3 102638155 102638192 -124886386 + (TG)n Simple_repeat Simple_repeat 2 38 0 234 0 0 0 chr3 102638193 102638219 -124886359 + (TA)n Simple_repeat Simple_repeat 2 27 0 180 0 0 0 chr3 102638223 102638243 -124886335 + (CA)n Simple_repeat Simple_repeat 2 21 0 328 312 156 0 chr3 102638521 102638675 -124885903 - MIR SINE MIR -14 248 71 22 0 0 0 chr3 102639385 102639407 -124885171 + AT_rich Low_complexity Low_complexity 1 22 0 237 33 0 0 chr3 102644113 102644143 -124880435 + (CA)n Simple_repeat Simple_repeat 1 30 0 567 265 105 0 chr3 102645297 102645459 -124879119 - MIR SINE MIR -72 190 12 1654 148 3 67 chr3 102646176 102646506 -124878072 - AluSx SINE Alu -3 309 1 192 111 0 0 chr3 102646508 102646544 -124878034 + (T)n Simple_repeat Simple_repeat 1 36 0 489 206 125 0 chr3 102646565 102646701 -124877877 - L1MA9 LINE L1 0 6312 6160 2862 146 24 4 chr3 102646714 102647214 -124877364 - L1PA16 LINE L1 0 6166 5657 416 354 92 34 chr3 102647214 102647681 -124876897 + L2 LINE L2 2464 2961 -353 24 0 0 0 chr3 102647838 102647862 -124876716 + AT_rich Low_complexity Low_complexity 1 24 0 36 108 0 0 chr3 102647905 102648053 -124876525 + AT_rich Low_complexity Low_complexity 1 148 0 23 0 0 0 chr3 102648111 102648134 -124876444 + AT_rich Low_complexity Low_complexity 1 23 0 1743 155 44 41 chr3 102648163 102648418 -124876160 + MER2 DNA MER2_type 2 260 -84 1817 162 3 3 chr3 102648418 102648708 -124875870 - AluJb SINE Alu -22 290 1 1743 155 44 41 chr3 102648708 102648794 -124875784 + MER2 DNA MER2_type 260 344 0 1813 146 0 0 chr3 102649871 102650145 -124874433 + AluSx SINE Alu 39 312 0 197 356 89 0 chr3 102650734 102650835 -124873743 + MIR SINE MIR 102 211 -51 33 43 0 0 chr3 102651928 102651975 -124872603 + AT_rich Low_complexity Low_complexity 1 47 0 267 268 57 67 chr3 102653348 102653557 -124871021 - L1ME4a LINE L1 -211 5910 5704 186 43 0 0 chr3 102653924 102653947 -124870631 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 535 79 0 0 chr3 102654594 102654670 -124869908 + Alu SINE Alu 224 299 -10 1872 130 13 17 chr3 102654836 102655136 -124869442 - AluSq SINE Alu -14 299 1 2390 56 3 43 chr3 102655429 102655782 -124868796 - AluY SINE Alu 0 340 1 2006 122 7 0 chr3 102656211 102656499 -124868079 + AluSq SINE Alu 5 294 -19 29 0 0 0 chr3 102657067 102657096 -124867482 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr3 102657822 102657847 -124866731 + AT_rich Low_complexity Low_complexity 1 25 0 1536 188 62 3 chr3 102658178 102658466 -124866112 + AluJb SINE Alu 1 305 -7 24 0 0 0 chr3 102660595 102660619 -124863959 + AT_rich Low_complexity Low_complexity 1 24 0 204 354 106 15 chr3 102660841 102661039 -124863539 - MIR SINE MIR -12 250 35 2329 90 3 0 chr3 102661630 102661930 -124862648 - AluSp SINE Alu -10 303 3 21 0 0 0 chr3 102662021 102662042 -124862536 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 102662073 102662104 -124862474 + AT_rich Low_complexity Low_complexity 1 31 0 2199 103 3 0 chr3 102662900 102663191 -124861387 + AluSx SINE Alu 4 295 -17 361 193 11 0 chr3 102664140 102664228 -124860350 - LTR37A LTR ERV1 0 426 338 1704 85 4 46 chr3 102664231 102664491 -124860087 - AluY SINE Alu 0 311 63 710 64 0 0 chr3 102664491 102664585 -124859993 - AluY SINE Alu -217 94 1 348 284 22 73 chr3 102664586 102664667 -124859911 - LTR37A LTR ERV1 -78 348 264 333 47 0 0 chr3 102664667 102664710 -124859868 + (TG)n Simple_repeat Simple_repeat 2 44 0 348 284 22 73 chr3 102664710 102664860 -124859718 - LTR37A LTR ERV1 -162 264 129 1695 156 0 15 chr3 102665664 102665933 -124858645 - AluSx SINE Alu -19 293 29 23 0 0 0 chr3 102666720 102666743 -124857835 + AT_rich Low_complexity Low_complexity 1 23 0 1849 132 64 0 chr3 102666746 102667027 -124857551 - AluSx SINE Alu -13 299 1 495 215 28 19 chr3 102667227 102667334 -124857244 - MIR SINE MIR -108 154 47 478 262 18 49 chr3 102667802 102667966 -124856612 + MIR SINE MIR 85 243 -19 447 189 0 22 chr3 102668356 102668446 -124856132 - MIR SINE MIR -10 252 165 916 297 62 19 chr3 102669062 102669480 -124855098 - LTR16B LTR ERVL -10 454 19 344 345 75 52 chr3 102669916 102670183 -124854395 - L2 LINE L2 -465 2849 2577 385 323 146 12 chr3 102670270 102670434 -124854144 + MER5A DNA MER1_type 4 189 0 1420 188 32 41 chr3 102670442 102670782 -124853796 - MER58B DNA MER1_type 0 341 5 246 240 40 0 chr3 102676537 102676612 -124847966 + (TA)n Simple_repeat Simple_repeat 1 78 0 33 25 0 0 chr3 102679384 102679424 -124845154 + AT_rich Low_complexity Low_complexity 1 40 0 225 0 0 0 chr3 102679516 102679541 -124845037 + (TA)n Simple_repeat Simple_repeat 2 26 0 205 342 141 20 chr3 102679834 102679983 -124844595 - MIR SINE MIR -73 189 23 * 277 297 70 23 chr3 102679975 102680103 -124844475 + MIR SINE MIR 128 261 -1 544 173 9 9 chr3 102680528 102680638 -124843940 - L1MB7 LINE L1 -9 6175 6066 33 25 0 0 chr3 102680647 102680687 -124843891 + AT_rich Low_complexity Low_complexity 1 40 0 3020 152 34 4 chr3 102681163 102681929 -124842649 - L1MB7 LINE L1 -538 5774 4983 252 302 0 0 chr3 102682245 102682308 -124842270 - MIR SINE MIR -199 63 1 204 324 29 38 chr3 102682714 102682819 -124841759 + L2 LINE L2 3169 3272 0 30 77 0 0 chr3 102685522 102685587 -124838991 + AT_rich Low_complexity Low_complexity 1 65 0 205 310 133 9 chr3 102685880 102685993 -124838585 - MIR SINE MIR -71 191 65 294 95 0 0 chr3 102686307 102686349 -124838229 + (GGAA)n Simple_repeat Simple_repeat 2 43 0 369 0 0 0 chr3 102687168 102687209 -124837369 + (CA)n Simple_repeat Simple_repeat 2 42 0 215 211 0 0 chr3 102687307 102687345 -124837233 + (CA)n Simple_repeat Simple_repeat 1 38 0 226 299 109 53 chr3 102688886 102689355 -124835223 + L1M4 LINE L1 3640 4134 -2012 22 0 0 0 chr3 102689696 102689718 -124834860 + AT_rich Low_complexity Low_complexity 1 22 0 228 67 0 0 chr3 102691158 102691188 -124833390 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 306 346 55 37 chr3 102691918 102692135 -124832443 + MIR SINE MIR 14 234 -28 436 262 19 10 chr3 102692517 102692620 -124831958 + MIR SINE MIR 51 154 -108 22 0 0 0 chr3 102693251 102693273 -124831305 + AT_rich Low_complexity Low_complexity 1 22 0 446 0 19 0 chr3 102693975 102694029 -124830549 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 346 167 4 8 chr3 102694030 102694093 -124830485 - AluSq SINE Alu -14 289 235 1771 133 0 0 chr3 102694102 102694351 -124830227 - AluSq SINE Alu -64 249 1 182 150 25 0 chr3 102694532 102694572 -124830006 + (TAGA)n Simple_repeat Simple_repeat 2 42 0 26 0 0 0 chr3 102695775 102695801 -124828777 + AT_rich Low_complexity Low_complexity 1 26 0 364 316 67 30 chr3 102696220 102696517 -124828061 - L1ME4a LINE L1 -218 5903 5596 943 151 0 104 chr3 102696660 102696872 -124827706 - AluJb SINE Alu -2 310 121 342 410 89 56 chr3 102696875 102697467 -124827111 - L1ME4a LINE L1 -15 6106 5495 1788 158 0 0 chr3 102698443 102698757 -124825821 - AluSx SINE Alu 0 314 1 423 285 47 62 chr3 102699285 102699478 -124825100 + MARNA DNA Mariner 10 199 -387 753 192 0 8 chr3 102699557 102699687 -124824891 + AluJo SINE Alu 1 129 -183 569 109 22 38 chr3 102699687 102699870 -124824708 + (TA)n Simple_repeat Simple_repeat 1 180 0 2072 125 0 0 chr3 102699913 102700194 -124824384 + AluSx SINE Alu 4 284 -28 24 0 0 0 chr3 102700194 102700218 -124824360 + AT_rich Low_complexity Low_complexity 1 24 0 627 229 121 0 chr3 102700218 102700384 -124824194 + AluJo SINE Alu 121 306 -6 238 216 0 0 chr3 102701198 102701249 -124823329 - Charlie1 DNA MER1_type -656 2105 2055 636 250 13 0 chr3 102701258 102701410 -124823168 - Charlie1 DNA MER1_type -2607 154 1 2424 67 0 10 chr3 102702338 102702652 -124821926 - AluY SINE Alu 0 311 1 710 222 0 14 chr3 102703467 102703611 -124820967 + AluJb SINE Alu 145 286 -26 288 0 0 0 chr3 102703872 102703904 -124820674 + (CA)n Simple_repeat Simple_repeat 1 32 0 305 365 48 0 chr3 102705164 102705309 -124819269 - MIR3 SINE MIR -23 185 34 189 264 0 0 chr3 102706315 102706387 -124818191 + A-rich Low_complexity Low_complexity 1 72 0 876 236 33 0 chr3 102706603 102706815 -124817763 + MER20 DNA MER1_type 1 219 0 24 32 0 0 chr3 102707330 102707361 -124817217 + AT_rich Low_complexity Low_complexity 1 31 0 220 203 14 72 chr3 102708825 102708894 -124815684 - MIR SINE MIR -10 252 188 21 36 0 0 chr3 102708904 102708932 -124815646 + AT_rich Low_complexity Low_complexity 1 28 0 1408 176 0 27 chr3 102709160 102709421 -124815157 + AluSx SINE Alu 1 254 -58 30 59 0 0 chr3 102709545 102709596 -124814982 + AT_rich Low_complexity Low_complexity 1 51 0 192 77 0 0 chr3 102710787 102710813 -124813765 + (T)n Simple_repeat Simple_repeat 1 26 0 405 302 31 0 chr3 102711789 102711948 -124812630 - MIR SINE MIR -6 256 93 270 244 139 0 chr3 102712259 102712345 -124812233 + MER5A DNA MER1_type 9 106 -83 24 0 0 0 chr3 102712801 102712825 -124811753 + AT_rich Low_complexity Low_complexity 1 24 0 259 253 53 13 chr3 102712838 102712913 -124811665 - MIR SINE MIR -5 257 180 226 200 75 0 chr3 102713753 102713793 -124810785 + MER5A DNA MER1_type 147 189 0 1857 120 55 0 chr3 102714750 102715025 -124809553 + AluSx SINE Alu 5 294 -18 224 350 0 50 chr3 102715153 102715253 -124809325 - L2 LINE L2 -5 3308 3214 21 0 0 0 chr3 102715457 102715478 -124809100 + AT_rich Low_complexity Low_complexity 1 21 0 345 24 0 0 chr3 102715988 102716030 -124808548 + (TG)n Simple_repeat Simple_repeat 2 43 0 1877 149 0 3 chr3 102716622 102716917 -124807661 - AluSx SINE Alu -18 294 1 4288 264 55 23 chr3 102716922 102718777 -124805801 - L1MDa LINE L1 -1767 4773 2858 216 0 0 0 chr3 102718777 102718801 -124805777 + (T)n Simple_repeat Simple_repeat 1 24 0 234 0 0 0 chr3 102719365 102719391 -124805187 + (T)n Simple_repeat Simple_repeat 1 26 0 308 283 18 0 chr3 102719394 102719507 -124805071 - L1MDa LINE L1 -3691 2849 2735 221 128 43 0 chr3 102719512 102719559 -124805019 + (TA)n Simple_repeat Simple_repeat 1 49 0 864 200 98 24 chr3 102719634 102720015 -124804563 - L1MDa LINE L1 -3890 2650 2335 214 241 63 38 chr3 102720063 102720142 -124804436 + MIR3 SINE MIR 126 206 -2 31 26 0 0 chr3 102722321 102722359 -124802219 + AT_rich Low_complexity Low_complexity 1 38 0 243 257 0 14 chr3 102722842 102722912 -124801666 + CT-rich Low_complexity Low_complexity 3 71 0 217 354 91 20 chr3 102723719 102723818 -124800760 - L2 LINE L2 -5 3267 3162 923 253 23 8 chr3 102724012 102724269 -124800309 - L1ME1 LINE L1 -8 6158 5898 314 328 40 8 chr3 102724416 102724541 -124800037 - MIR SINE MIR -106 156 28 1866 149 10 0 chr3 102724788 102725076 -124799502 + AluSx SINE Alu 1 291 -21 733 248 19 0 chr3 102727433 102727594 -124796984 - FRAM SINE Alu -11 165 2 9313 98 24 20 chr3 102728251 102729689 -124794889 + L1PA8A LINE L1 4055 5502 -629 2086 85 6 76 chr3 102729689 102730019 -124794559 + AluSg SINE Alu 4 310 0 9313 98 24 20 chr3 102730019 102730639 -124793939 + L1PA8A LINE L1 5502 6118 -13 22 0 0 0 chr3 102730639 102730661 -124793917 + AT_rich Low_complexity Low_complexity 1 22 0 261 0 0 0 chr3 102733318 102733347 -124791231 + (T)n Simple_repeat Simple_repeat 1 29 0 311 359 118 8 chr3 102734474 102734719 -124789859 - L3b LINE CR1 -90 1493 1222 1310 267 120 0 chr3 102734764 102735131 -124789447 - HERVL LTR ERVL -3483 2171 1761 21 36 0 0 chr3 102735164 102735192 -124789386 + AT_rich Low_complexity Low_complexity 1 28 0 684 115 0 0 chr3 102735354 102735458 -124789120 + (TA)n Simple_repeat Simple_repeat 2 105 0 3949 223 43 67 chr3 102735874 102736542 -124788036 - L1MA3 LINE L1 -475 6066 5384 678 144 34 0 chr3 102736542 102736660 -124787918 - L1MA3 LINE L1 -2 6303 6182 3949 223 43 67 chr3 102736660 102737677 -124786901 - L1MA3 LINE L1 -1157 5384 4345 215 31 31 0 chr3 102737677 102737709 -124786869 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 2192 86 0 0 chr3 102737711 102737990 -124786588 - AluSc SINE Alu -30 279 1 3949 223 43 67 chr3 102737990 102739648 -124784930 - L1MA3 LINE L1 -2197 4344 2302 312 70 0 0 chr3 102739653 102739696 -124784882 + (TG)n Simple_repeat Simple_repeat 1 43 0 330 80 0 0 chr3 102739696 102739746 -124784832 + (GA)n Simple_repeat Simple_repeat 2 51 0 180 0 0 0 chr3 102739974 102739994 -124784584 + (TAATG)n Simple_repeat Simple_repeat 4 23 0 405 290 204 23 chr3 102740383 102740735 -124783843 + L2 LINE L2 1276 1691 -1623 192 263 12 25 chr3 102740893 102740973 -124783605 + L2 LINE L2 1706 1784 -1530 363 319 162 30 chr3 102740980 102741412 -124783166 + L2 LINE L2 2320 2808 -506 1212 239 3 17 chr3 102741413 102741706 -124782872 + AluJo SINE Alu 1 289 -13 21 36 0 0 chr3 102741706 102741734 -124782844 + AT_rich Low_complexity Low_complexity 1 28 0 317 149 0 45 chr3 102741789 102741856 -124782722 + L1MA1 LINE L1 6075 6138 -164 415 353 75 23 chr3 102741959 102742273 -124782305 - L2 LINE L2 -273 3040 2705 190 336 209 27 chr3 102742639 102742749 -124781829 + L2 LINE L2 3143 3272 0 216 325 73 57 chr3 102743547 102743670 -124780908 - L2 LINE L2 -13 3300 3176 1922 168 3 12 chr3 102743984 102744324 -124780254 + MER1B DNA MER1_type 1 337 0 204 345 138 25 chr3 102744339 102744736 -124779842 - L2 LINE L2 -498 2816 2375 1720 91 0 0 chr3 102745202 102745428 -124779150 - L1PA8 LINE L1 -496 5676 5450 3601 74 2 6 chr3 102745428 102745908 -124778670 + L1PA8 LINE L1 5684 6165 -7 584 148 9 0 chr3 102746130 102746238 -124778340 + CT-rich Low_complexity Low_complexity 1 109 0 1526 181 59 0 chr3 102746238 102746526 -124778052 - AluSp SINE Alu -8 305 1 23 92 0 0 chr3 102746656 102746721 -124777857 + AT_rich Low_complexity Low_complexity 1 65 0 22 70 0 0 chr3 102747116 102747159 -124777419 + AT_rich Low_complexity Low_complexity 1 43 0 42963 29 21 1 chr3 102747529 102753560 -124771018 - L1HS LINE L1 0 6155 1 24 0 0 0 chr3 102755742 102755766 -124768812 + AT_rich Low_complexity Low_complexity 1 24 0 36 77 0 0 chr3 102756749 102756827 -124767751 + AT_rich Low_complexity Low_complexity 1 78 0 776 210 112 15 chr3 102757130 102757335 -124767243 - MIR SINE MIR -21 241 17 366 361 44 28 chr3 102757431 102757683 -124766895 + MIR SINE MIR 6 261 -1 2191 96 17 0 chr3 102758065 102758366 -124766212 - AluSp SINE Alu -7 306 1 222 37 0 0 chr3 102758430 102758457 -124766121 + (TG)n Simple_repeat Simple_repeat 2 28 0 263 163 65 22 chr3 102758457 102758549 -124766029 + (TA)n Simple_repeat Simple_repeat 2 97 0 23 0 0 0 chr3 102760710 102760733 -124763845 + AT_rich Low_complexity Low_complexity 1 23 0 25 51 0 0 chr3 102761125 102761164 -124763414 + AT_rich Low_complexity Low_complexity 1 39 0 469 131 48 7 chr3 102762795 102762940 -124761638 + (TA)n Simple_repeat Simple_repeat 1 151 0 201 109 55 0 chr3 102763209 102763264 -124761314 + (TA)n Simple_repeat Simple_repeat 2 59 0 2136 53 0 4 chr3 102763288 102763587 -124760991 - AluY SINE Alu 0 321 24 203 339 60 54 chr3 102764092 102764260 -124760318 - L3 LINE CR1 -15 1562 1394 236 53 26 0 chr3 102764309 102764347 -124760231 + (TG)n Simple_repeat Simple_repeat 2 40 0 570 274 23 62 chr3 102764454 102764760 -124759818 - L2 LINE L2 -1 3312 3019 26 0 0 0 chr3 102764907 102764933 -124759645 + AT_rich Low_complexity Low_complexity 1 26 0 1472 282 64 21 chr3 102764991 102765473 -124759105 - MLT1H1 LTR MaLR 0 555 53 1164 228 120 26 chr3 102765493 102765918 -124758660 - MLT1C LTR MaLR -2 465 1 26 50 0 0 chr3 102768787 102768827 -124755751 + AT_rich Low_complexity Low_complexity 1 40 0 448 290 123 83 chr3 102769066 102769514 -124755064 - MLT1K LTR MaLR 0 588 123 22 42 0 0 chr3 102769627 102769651 -124754927 + AT_rich Low_complexity Low_complexity 1 24 0 219 238 143 56 chr3 102770011 102770137 -124754441 - MIR SINE MIR -56 206 70 219 391 111 17 chr3 102770283 102770644 -124753934 - L2 LINE L2 -682 2632 2238 706 339 157 3 chr3 102770733 102771116 -124753462 - MLT1J2 LTR MaLR -8 442 1 715 350 39 19 chr3 102771329 102771741 -124752837 + LTR16B LTR ERVL 39 458 -6 311 160 80 27 chr3 102772038 102772113 -124752465 - Charlie8 DNA MER1_type -989 1428 1350 342 0 0 0 chr3 102772366 102772404 -124752174 + (CA)n Simple_repeat Simple_repeat 2 39 0 509 317 161 0 chr3 102773619 102773843 -124750735 - MIR SINE MIR 0 262 3 207 162 0 0 chr3 102774684 102774721 -124749857 + (CATA)n Simple_repeat Simple_repeat 2 38 0 558 207 12 0 chr3 102775322 102775580 -124748998 + (TA)n Simple_repeat Simple_repeat 1 261 0 22 0 0 0 chr3 102776285 102776307 -124748271 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 102776449 102776470 -124748108 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3 102777104 102777136 -124747442 + AT_rich Low_complexity Low_complexity 1 32 0 291 217 9 85 chr3 102777176 102777282 -124747296 + L1P LINE L1 4918 5015 -1131 24 32 0 0 chr3 102777509 102777540 -124747038 + AT_rich Low_complexity Low_complexity 1 31 0 21 71 0 0 chr3 102778066 102778108 -124746470 + AT_rich Low_complexity Low_complexity 1 42 0 212 69 56 42 chr3 102778734 102778806 -124745772 + (TA)n Simple_repeat Simple_repeat 2 74 0 542 304 125 40 chr3 102778948 102779395 -124745183 + HAL1 LINE L1 1125 1609 -898 279 287 37 22 chr3 102779485 102779621 -124744957 - LTR67 LTR ERVL -1 556 419 1141 70 23 0 chr3 102780851 102781022 -124743556 + (TTTCC)n Simple_repeat Simple_repeat 4 178 0 2221 117 7 0 chr3 102781022 102781378 -124743200 - AluY SINE Alu 0 358 1 22 0 0 0 chr3 102781398 102781420 -124743158 + AT_rich Low_complexity Low_complexity 1 22 0 653 242 51 8 chr3 102781813 102781997 -124742581 - MLT1A2 LTR MaLR -7 373 177 192 179 0 0 chr3 102782010 102782049 -124742529 + GA-rich Low_complexity Low_complexity 2 40 0 811 156 24 48 chr3 102782061 102782228 -124742350 - MLT1A2 LTR MaLR -211 163 1 2868 242 31 10 chr3 102782420 102783094 -124741484 + L1MB7 LINE L1 19 706 -6153 870 250 57 21 chr3 102783094 102783426 -124741152 + L1MB7 LINE L1 1624 1967 -4888 307 221 95 0 chr3 102783423 102783518 -124741060 + L1MB7 LINE L1 3222 3325 -3632 * 630 288 31 18 chr3 102783497 102783723 -124740855 + L1MB7 LINE L1 4775 5003 -1954 1171 60 0 27 chr3 102783723 102783807 -124740771 + (GGAA)n Simple_repeat Simple_repeat 1 259 0 1171 60 0 27 chr3 102783807 102783990 -124740588 + (GGAA)n Simple_repeat Simple_repeat 2 179 0 591 174 0 53 chr3 102784060 102784250 -124740328 + GA-rich Low_complexity Low_complexity 1 180 0 2391 258 30 32 chr3 102784252 102785075 -124739503 + L1MB7 LINE L1 4957 5778 -1179 236 130 0 0 chr3 102785083 102785129 -124739449 - LTR66 LTR ERVL -171 439 394 657 253 0 0 chr3 102785149 102785327 -124739251 + (TA)n Simple_repeat Simple_repeat 2 179 0 260 330 0 0 chr3 102785332 102785420 -124739158 - L1MC4 LINE L1 -1340 6702 6615 229 323 0 0 chr3 102785441 102785534 -124739044 + L1MC4 LINE L1 6614 6706 -1336 * 3678 208 63 9 chr3 102785533 102786665 -124737913 + L1MB7 LINE L1 5800 6995 0 180 0 0 0 chr3 102786865 102786885 -124737693 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 344 354 44 24 chr3 102787563 102787769 -124736809 - LTR33 LTR ERVL -290 231 22 837 218 35 11 chr3 102787866 102788040 -124736538 - MER5A DNA MER1_type -2 187 10 33 25 0 0 chr3 102788834 102788874 -124735704 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr3 102789429 102789457 -124735121 + AT_rich Low_complexity Low_complexity 1 28 0 224 361 19 0 chr3 102789532 102789640 -124734938 + L2 LINE L2 3197 3306 -7 784 209 0 0 chr3 102789727 102789914 -124734664 - FRAM SINE Alu 0 187 1 527 348 72 32 chr3 102790163 102790563 -124734015 + L2 LINE L2 2433 2848 -466 180 179 0 0 chr3 102790635 102790674 -124733904 + CT-rich Low_complexity Low_complexity 2 40 0 3248 16 0 0 chr3 102791469 102791841 -124732737 - L1PA2 LINE L1 -5 6150 5779 1512 16 92 0 chr3 102791841 102792025 -124732553 + L1PA2 LINE L1 5573 5773 -382 219 191 0 0 chr3 102792693 102792761 -124731817 + CT-rich Low_complexity Low_complexity 1 68 0 2014 313 83 17 chr3 102792761 102793738 -124730840 + L2 LINE L2 1565 2605 -709 1670 93 9 0 chr3 102793946 102794171 -124730407 - AluSp SINE Alu -6 307 81 333 230 35 0 chr3 102794300 102794387 -124730191 - L2 LINE L2 -1401 1913 1824 662 317 104 28 chr3 102794576 102795084 -124729494 + L2 LINE L2 2756 3313 0 326 363 18 18 chr3 102795292 102795576 -124729002 + ERVL LTR ERVL 1033 1316 -4448 641 283 36 27 chr3 102795857 102796076 -124728502 + ERVL LTR ERVL 3053 3273 -2491 779 323 70 51 chr3 102796124 102796895 -124727683 + ERVL LTR ERVL 3413 4198 -1287 582 367 20 4 chr3 102796990 102797235 -124727343 + ERVL LTR ERVL 4415 4663 -1101 582 368 61 23 chr3 102797336 102797776 -124726802 + ERVL LTR ERVL 4833 5289 -475 25 0 0 0 chr3 102798828 102798853 -124725725 + AT_rich Low_complexity Low_complexity 1 25 0 505 324 82 0 chr3 102799211 102799430 -124725148 - LTR33A LTR ERVL -18 505 269 181 345 281 0 chr3 102800620 102800759 -124723819 - L3b LINE CR1 -135 1448 1271 542 314 80 8 chr3 102801684 102801923 -124722655 - MIR SINE MIR -1 261 6 330 363 58 29 chr3 102803568 102803808 -124720770 - MIR SINE MIR 0 262 16 483 283 48 22 chr3 102803996 102804265 -124720313 - L1M4 LINE L1 -2779 3367 3092 * 517 308 37 19 chr3 102804253 102804630 -124719948 - L1M4 LINE L1 -3509 2637 2254 2118 123 3 0 chr3 102804676 102804969 -124719609 - AluSx SINE Alu -8 304 11 2306 169 57 14 chr3 102805689 102806127 -124718451 + MLT1C LTR MaLR 3 459 -8 436 278 137 20 chr3 102809884 102810195 -124714383 + ERVL LTR ERVL 3748 4100 -1385 598 315 19 0 chr3 102810404 102810620 -124713958 + ERVL LTR ERVL 5166 5385 -379 33 0 0 0 chr3 102810622 102810655 -124713923 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr3 102811820 102811849 -124712729 + AT_rich Low_complexity Low_complexity 1 29 0 1964 124 0 4 chr3 102811860 102812133 -124712445 + AluSq SINE Alu 26 297 -16 43 20 0 0 chr3 102812730 102812780 -124711798 + AT_rich Low_complexity Low_complexity 1 50 0 1830 135 31 6 chr3 102813391 102813709 -124710869 + L1MB3 LINE L1 5851 6176 -7 268 368 109 13 chr3 102815774 102816076 -124708502 - L3 LINE CR1 -56 1521 1191 351 280 24 0 chr3 102819636 102819761 -124704817 + LTR37B LTR ERV1 6 133 -335 626 197 7 0 chr3 102819868 102820005 -124704573 + LTR37A LTR ERV1 289 426 0 192 261 116 14 chr3 102820134 102820203 -124704375 + L2 LINE L2 3191 3266 -47 24 0 0 0 chr3 102821411 102821435 -124703143 + AT_rich Low_complexity Low_complexity 1 24 0 1950 103 0 22 chr3 102822114 102822385 -124702193 + AluSg SINE Alu 16 280 -30 414 294 11 91 chr3 102822404 102822679 -124701899 - L1ME1 LINE L1 -5 6230 5978 * 3666 247 34 61 chr3 102822672 102823484 -124701094 - L1ME1 LINE L1 -643 5592 4760 23 68 0 0 chr3 102823484 102823528 -124701050 + AT_rich Low_complexity Low_complexity 1 44 0 3666 247 34 61 chr3 102823528 102824027 -124700551 - L1ME1 LINE L1 -1475 4760 4288 3165 222 80 116 chr3 102824027 102825847 -124698731 + MER52A LTR ERV1 1 1754 -1 3666 247 34 61 chr3 102825847 102826097 -124698481 - L1ME1 LINE L1 -1947 4288 4033 213 65 0 0 chr3 102826097 102826128 -124698450 + (T)n Simple_repeat Simple_repeat 1 31 0 13615 175 29 12 chr3 102826191 102830931 -124693647 - L1 LINE L1 -1052 6513 1688 1933 113 81 169 chr3 102830932 102831429 -124693149 - MLT2A2 LTR ERVL 0 453 1 4540 199 7 2 chr3 102831429 102832247 -124692331 - L1 LINE L1 -5874 1691 870 1511 300 73 48 chr3 102832328 102832444 -124692134 - L1ME1 LINE L1 -4807 1589 1477 209 57 29 0 chr3 102832444 102832479 -124692099 + (TTG)n Simple_repeat Simple_repeat 1 36 0 1511 300 73 48 chr3 102832479 102833795 -124690783 - L1ME1 LINE L1 -4919 1477 42 1688 182 28 36 chr3 102834013 102834375 -124690203 + MLT1A1 LTR MaLR 4 362 -3 236 310 15 2 chr3 102834942 102835015 -124689563 + MER91 DNA MER1_type 3 68 -72 446 232 205 46 chr3 102835023 102835174 -124689404 + MER5A DNA MER1_type 9 183 -6 668 292 67 18 chr3 102835890 102836174 -124688404 - MER76 LTR ERV -34 654 357 2169 148 77 34 chr3 102836203 102836715 -124687863 - MLT2A2 LTR ERVL 0 554 1 991 222 19 38 chr3 102836716 102836977 -124687601 - MER76 LTR ERV -432 256 1 23 0 0 0 chr3 102837280 102837303 -124687275 + AT_rich Low_complexity Low_complexity 1 23 0 3295 174 5 23 chr3 102839266 102839921 -124684657 - L1PA15 LINE L1 -9 6156 5514 866 115 39 0 chr3 102839921 102840051 -124684527 + AluSq/x SINE Alu 1 135 -177 1459 118 167 27 chr3 102840051 102840314 -124684264 + AluY SINE Alu 1 300 -11 1056 105 0 0 chr3 102840316 102840469 -124684109 - L1PA15 LINE L1 -640 5525 5373 1514 113 0 5 chr3 102841227 102841502 -124683076 + AluSg/x SINE Alu 74 347 0 22 0 0 0 chr3 102841934 102841956 -124682622 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr3 102842741 102842769 -124681809 + AT_rich Low_complexity Low_complexity 1 28 0 2129 126 0 0 chr3 102843795 102844096 -124680482 + AluSx SINE Alu 1 301 -11 364 378 0 0 chr3 102844632 102844759 -124679819 + MER5A DNA MER1_type 63 189 0 5243 58 5 0 chr3 102845067 102845736 -124678842 + L1PA4 LINE L1 5484 6155 0 21 0 0 0 chr3 102845748 102845769 -124678809 + AT_rich Low_complexity Low_complexity 1 21 0 235 171 29 43 chr3 102845867 102845937 -124678641 + (CAGAGA)n Simple_repeat Simple_repeat 4 72 0 413 335 71 7 chr3 102846663 102846969 -124677609 + MLT1J LTR MaLR 18 314 -132 236 362 63 78 chr3 102847112 102847220 -124677358 - L2 LINE L2 -3 3269 3161 604 229 79 47 chr3 102847220 102847434 -124677144 + MER58A DNA MER1_type 1 221 -3 236 362 63 78 chr3 102847434 102847673 -124676905 - L2 LINE L2 -111 3161 2927 364 354 17 22 chr3 102847962 102848143 -124676435 - MER5A DNA MER1_type -3 186 7 240 281 10 52 chr3 102848715 102848811 -124675767 - MIR SINE MIR -46 216 125 254 122 61 0 chr3 102849046 102849095 -124675483 + L1MB1 LINE L1 6108 6159 -9 231 213 21 0 chr3 102849735 102849782 -124674796 - LTR33A LTR ERVL -419 104 57 26 82 0 0 chr3 102850073 102850134 -124674444 + AT_rich Low_complexity Low_complexity 1 61 0 323 193 0 0 chr3 102851189 102851246 -124673332 + L1MC2 LINE L1 6251 6307 -37 317 235 51 61 chr3 102851323 102851421 -124673157 - MER5A DNA MER1_type -2 187 91 22 0 0 0 chr3 102851520 102851542 -124673036 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 102852195 102852216 -124672362 + AT_rich Low_complexity Low_complexity 1 21 0 906 234 135 95 chr3 102852614 102853044 -124671534 - MLT1H LTR MaLR -3 546 90 2120 109 13 0 chr3 102853044 102853346 -124671232 + AluY SINE Alu 1 306 -5 906 234 135 95 chr3 102853346 102853440 -124671138 - MLT1H LTR MaLR -459 90 1 621 341 122 31 chr3 102853523 102854065 -124670513 + L3 LINE CR1 430 1020 -557 338 39 39 20 chr3 102854344 102854395 -124670183 - MLT2A1 LTR ERVL 0 444 393 357 154 7 59 chr3 102854403 102854539 -124670039 + (TA)n Simple_repeat Simple_repeat 2 130 0 240 35 0 0 chr3 102854576 102854605 -124669973 + (TA)n Simple_repeat Simple_repeat 2 30 0 299 196 47 0 chr3 102854621 102854728 -124669850 + (TA)n Simple_repeat Simple_repeat 1 112 0 331 206 0 108 chr3 102854731 102854833 -124669745 + L1MC4 LINE L1 6613 6703 -1339 2456 80 42 89 chr3 102854838 102854965 -124669613 - MLT2A1 LTR ERVL -38 406 275 2377 84 0 3 chr3 102854965 102855275 -124669303 + AluY SINE Alu 1 309 -2 2456 80 42 89 chr3 102855275 102855573 -124669005 - MLT2A1 LTR ERVL -169 275 1 325 248 38 19 chr3 102855762 102855867 -124668711 + L1MCc LINE L1 24 130 -6293 756 294 62 29 chr3 102855953 102856224 -124668354 + L1MCc LINE L1 835 1124 -5299 1670 182 7 3 chr3 102856224 102856520 -124668058 + AluJb SINE Alu 5 301 -11 756 294 62 29 chr3 102856520 102856632 -124667946 + L1MCc LINE L1 1124 1231 -5192 3074 263 82 28 chr3 102856682 102857171 -124667407 + L1M4 LINE L1 2678 3139 -3007 1586 226 130 4 chr3 102857171 102857649 -124666929 - MER34 LTR ERV1 0 542 5 3074 263 82 28 chr3 102857649 102858651 -124665927 + L1M4 LINE L1 3139 4249 -1897 295 170 0 0 chr3 102858848 102858895 -124665683 + AluSc SINE Alu 38 84 -215 2362 90 0 0 chr3 102858895 102859194 -124665384 + AluY SINE Alu 1 299 -12 1670 100 0 17 chr3 102859197 102859438 -124665140 + AluSc SINE Alu 73 309 0 30 59 0 0 chr3 102859584 102859635 -124664943 + AT_rich Low_complexity Low_complexity 1 51 0 1878 116 45 58 chr3 102860051 102860361 -124664217 + AluSx SINE Alu 1 306 -6 379 238 119 93 chr3 102860492 102860685 -124663893 + MLT1K LTR MaLR 282 479 -109 21 36 0 0 chr3 102860932 102860960 -124663618 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr3 102861012 102861038 -124663540 + AT_rich Low_complexity Low_complexity 1 26 0 26 0 0 0 chr3 102863369 102863395 -124661183 + AT_rich Low_complexity Low_complexity 1 26 0 2087 132 3 0 chr3 102863607 102863918 -124660660 - AluSp SINE Alu -1 312 1 24 67 0 0 chr3 102864380 102864425 -124660153 + AT_rich Low_complexity Low_complexity 1 45 0 1958 107 7 17 chr3 102864425 102864716 -124659862 - AluSx SINE Alu -24 288 1 355 344 39 28 chr3 102869234 102869414 -124655164 + MER5A DNA MER1_type 1 182 -7 291 261 0 15 chr3 102871341 102871406 -124653172 - L2 LINE L2 -16 3297 3234 195 227 0 23 chr3 102871630 102871674 -124652904 + MIR SINE MIR 87 129 -133 27 0 0 0 chr3 102873490 102873517 -124651061 + AT_rich Low_complexity Low_complexity 1 27 0 1650 208 53 11 chr3 102874519 102874899 -124649679 - MSTD LTR MaLR 0 396 1 1281 247 51 23 chr3 102875020 102875372 -124649206 - MER21B LTR ERV1 -11 852 491 437 0 0 19 chr3 102875381 102875435 -124649143 + (TTATA)n Simple_repeat Simple_repeat 2 54 0 1395 176 4 31 chr3 102875440 102875695 -124648883 - AluJb SINE Alu -27 285 38 1030 234 11 63 chr3 102875698 102876121 -124648457 - MER21B LTR ERV1 -375 488 12 33 73 0 0 chr3 102876585 102876653 -124647925 + AT_rich Low_complexity Low_complexity 1 68 0 486 220 9 0 chr3 102876671 102876780 -124647798 + AluJ SINE Alu 1 110 -202 290 192 0 0 chr3 102876814 102876866 -124647712 + A-rich Low_complexity Low_complexity 1 52 0 754 150 0 48 chr3 102876866 102877053 -124647525 + (GGAA)n Simple_repeat Simple_repeat 3 180 0 414 230 14 14 chr3 102877065 102877204 -124647374 + GA-rich Low_complexity Low_complexity 2 140 0 3297 114 39 8 chr3 102877210 102877745 -124646833 + L1MA2 LINE L1 5753 6304 0 835 207 6 6 chr3 102877756 102877920 -124646658 + AluJ SINE Alu 119 282 -30 297 89 0 0 chr3 102877924 102877969 -124646609 + (CA)n Simple_repeat Simple_repeat 2 46 0 335 318 62 40 chr3 102878371 102878547 -124646031 - MIR3 SINE MIR -10 198 19 497 301 163 45 chr3 102879399 102879957 -124644621 + L1M4 LINE L1 3658 4281 -1865 21 57 0 0 chr3 102880033 102880068 -124644510 + AT_rich Low_complexity Low_complexity 1 35 0 437 316 25 0 chr3 102880093 102880371 -124644207 + L1M4 LINE L1 4412 4696 -1450 4472 239 52 51 chr3 102880644 102880933 -124643645 + L1M4 LINE L1 8 295 -6247 216 0 0 0 chr3 102880933 102880957 -124643621 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 4472 239 52 51 chr3 102880957 102881153 -124643425 + L1M4 LINE L1 295 489 -6053 1422 153 127 8 chr3 102881153 102881421 -124643157 - AluSx SINE Alu -9 303 4 4472 239 52 51 chr3 102881421 102882460 -124642118 + L1M4 LINE L1 489 1535 -5007 513 236 130 0 chr3 102882459 102882620 -124641958 - L1M4c LINE L1 -4931 1453 1272 * 552 283 27 11 chr3 102882623 102882807 -124641771 + L1M4 LINE L1 1853 2039 -4607 1220 93 5 31 chr3 102882812 102883006 -124641572 + L1PA13 LINE L1 5975 6163 0 1248 123 49 21 chr3 102883767 102884010 -124640568 + AluSq SINE Alu 50 299 -14 2171 116 3 3 chr3 102884176 102884478 -124640100 - AluSx SINE Alu -10 302 1 1946 145 3 10 chr3 102884506 102884802 -124639776 + AluSg SINE Alu 1 294 -16 195 278 35 107 chr3 102886212 102886381 -124638197 + L2 LINE L2 2935 3091 -181 24 0 0 0 chr3 102886614 102886638 -124637940 + AT_rich Low_complexity Low_complexity 1 24 0 2250 127 13 21 chr3 102887238 102887616 -124636962 - THE1C LTR MaLR 0 375 1 8381 136 71 41 chr3 102887616 102889150 -124635428 - THE1C-int LTR MaLR 0 1580 1 2244 136 22 5 chr3 102889150 102889517 -124635061 - THE1C LTR MaLR 0 375 3 210 171 24 0 chr3 102889719 102889760 -124634818 + (TATG)n Simple_repeat Simple_repeat 3 44 0 2605 55 0 0 chr3 102890847 102891158 -124633420 + AluY SINE Alu 1 311 0 314 297 138 7 chr3 102891620 102891765 -124632813 + L1ME2 LINE L1 6001 6164 0 2174 230 67 25 chr3 102891825 102892264 -124632314 + MER74A LTR ERVL 11 477 -81 1892 164 3 3 chr3 102892264 102892569 -124632009 - AluSq SINE Alu -8 305 1 2174 230 67 25 chr3 102892569 102892655 -124631923 + MER74A LTR ERVL 477 558 0 1674 207 37 23 chr3 102892812 102893109 -124631469 - MLT1A1 LTR MaLR 0 365 61 1941 154 3 0 chr3 102893109 102893402 -124631176 - AluSx SINE Alu -13 299 6 1674 207 37 23 chr3 102893402 102893456 -124631122 - MLT1A1 LTR MaLR -304 61 9 2249 87 0 0 chr3 102893523 102893823 -124630755 + AluY SINE Alu 1 300 -11 1146 109 18 0 chr3 102893858 102894023 -124630555 + AluSq SINE Alu 133 300 -13 344 209 39 31 chr3 102896398 102896527 -124628051 + L1MB8 LINE L1 6049 6178 0 1890 92 0 0 chr3 102896527 102896788 -124627790 - L1PA7 LINE L1 -7 6147 5887 22 35 0 0 chr3 102898163 102898192 -124626386 + AT_rich Low_complexity Low_complexity 1 29 0 303 247 31 0 chr3 102898369 102898466 -124626112 + (TA)n Simple_repeat Simple_repeat 2 101 0 315 299 37 19 chr3 102898752 102898859 -124625719 - L2 LINE L2 -5 3267 3159 1428 270 14 50 chr3 102899064 102899501 -124625077 + LTR16C LTR ERVL 69 489 -2 299 25 25 0 chr3 102903039 102903079 -124621499 + (TG)n Simple_repeat Simple_repeat 2 42 0 199 140 70 0 chr3 102903288 102903345 -124621233 + (CTTAT)n Simple_repeat Simple_repeat 2 62 0 25 0 0 0 chr3 102904070 102904095 -124620483 + AT_rich Low_complexity Low_complexity 1 25 0 7550 33 1 8 chr3 102904124 102905628 -124618950 - L1PA3 LINE L1 0 6155 4657 346 265 59 48 chr3 102905733 102905888 -124618690 + MIR SINE MIR 15 172 -36 2044 255 12 57 chr3 102905888 102906468 -124618110 + MLT2B3 LTR ERVL 1 554 0 346 265 59 48 chr3 102906468 102906484 -124618094 + MIR SINE MIR 172 186 -22 25 0 0 0 chr3 102906578 102906603 -124617975 + AT_rich Low_complexity Low_complexity 1 25 0 184 273 0 0 chr3 102907653 102907697 -124616881 - L2 LINE L2 -498 2816 2773 216 273 0 45 chr3 102907962 102908028 -124616550 - L2 LINE L2 -67 3246 3184 214 333 50 58 chr3 102909736 102909856 -124614722 + L2 LINE L2 3154 3272 0 222 37 0 0 chr3 102911095 102911122 -124613456 + (CA)n Simple_repeat Simple_repeat 1 27 0 2043 182 13 5 chr3 102911129 102911503 -124613075 + MLT2D LTR ERVL 1 377 -37 299 149 0 0 chr3 102911615 102911662 -124612916 + MLT2D LTR ERVL 366 412 -2 21 0 0 0 chr3 102914016 102914037 -124610541 + AT_rich Low_complexity Low_complexity 1 21 0 249 0 0 0 chr3 102914068 102914099 -124610479 - L1PA7 LINE L1 -182 5972 5942 774 273 67 4 chr3 102914100 102914353 -124610225 - L2 LINE L2 -657 2657 2389 232 289 75 53 chr3 102914500 102914687 -124609891 - MER113 DNA MER1_type? -330 191 1 210 206 111 0 chr3 102914763 102914826 -124609752 + MIR SINE MIR 122 191 -71 180 0 0 0 chr3 102914841 102914861 -124609717 + (CAGTA)n Simple_repeat Simple_repeat 1 20 0 348 256 0 22 chr3 102914951 102915041 -124609537 + L1MC4 LINE L1 6614 6701 -1341 241 152 0 0 chr3 102915041 102915087 -124609491 - LTR66 LTR ERVL -171 439 394 323 324 48 19 chr3 102916256 102916361 -124608217 + L2 LINE L2 3150 3257 -15 257 219 0 31 chr3 102916729 102916793 -124607785 + (CATATA)n Simple_repeat Simple_repeat 3 64 0 1839 134 0 18 chr3 102917657 102917941 -124606637 - AluSc SINE Alu 0 309 31 5870 33 0 0 chr3 102918265 102918958 -124605620 + L1PA3 LINE L1 5460 6152 -3 32 43 0 0 chr3 102918958 102919004 -124605574 + AT_rich Low_complexity Low_complexity 1 46 0 251 345 117 12 chr3 102919438 102919609 -124604969 - MIR3 SINE MIR -11 197 9 350 282 15 69 chr3 102920213 102920344 -124604234 + MER91B DNA MER1_type 49 172 -18 2361 41 0 0 chr3 102921624 102921914 -124602664 + L1PA4 LINE L1 5865 6154 -1 2349 87 0 0 chr3 102921932 102922242 -124602336 + AluY SINE Alu 1 310 -1 430 240 104 8 chr3 102923000 102923125 -124601453 + MIR SINE MIR 124 260 -2 27 92 0 0 chr3 102923637 102923713 -124600865 + AT_rich Low_complexity Low_complexity 1 76 0 27 0 0 0 chr3 102924468 102924495 -124600083 + AT_rich Low_complexity Low_complexity 1 27 0 181 362 0 0 chr3 102924606 102924675 -124599903 + L2 LINE L2 2356 2424 -890 22 0 0 0 chr3 102924761 102924783 -124599795 + AT_rich Low_complexity Low_complexity 1 22 0 246 62 0 0 chr3 102925217 102925249 -124599329 + (TTA)n Simple_repeat Simple_repeat 2 33 0 1724 179 0 42 chr3 102926672 102926985 -124597593 - AluJo SINE Alu -12 300 1 1823 145 7 30 chr3 102927267 102927587 -124596991 - AluSx SINE Alu 0 313 1 207 136 15 30 chr3 102927626 102927692 -124596886 + (TTCA)n Simple_repeat Simple_repeat 1 65 0 24 32 0 0 chr3 102927871 102927902 -124596676 + AT_rich Low_complexity Low_complexity 1 31 0 1787 19 9 0 chr3 102927925 102928137 -124596441 - L1PA3 LINE L1 -1 6154 5941 269 302 131 4 chr3 102928277 102928522 -124596056 - L1ME LINE L1 -346 5816 5541 422 261 172 33 chr3 102928619 102928862 -124595716 - L1ME LINE L1 -723 5455 5186 28 0 0 0 chr3 102928884 102928912 -124595666 + AT_rich Low_complexity Low_complexity 1 28 0 345 277 118 55 chr3 102928947 102929236 -124595342 + L1M4 LINE L1 4458 4764 -1382 1031 96 0 0 chr3 102929445 102929580 -124594998 + AluSq/x SINE Alu 1 135 -178 439 214 45 7 chr3 102929598 102929752 -124594826 + GA-rich Low_complexity Low_complexity 3 162 0 909 108 5 38 chr3 102929754 102929940 -124594638 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 260 183 0 17 chr3 102929948 102930008 -124594570 + GA-rich Low_complexity Low_complexity 2 60 0 478 100 11 22 chr3 102931832 102931922 -124592656 - LTR17 LTR ERV1 -522 258 170 680 105 19 0 chr3 102931971 102932076 -124592502 - AluY SINE Alu -7 304 198 1948 88 0 8 chr3 102932264 102932526 -124592052 - AluY SINE Alu -5 306 47 433 295 92 108 chr3 102932651 102933105 -124591473 - L2 LINE L2 0 3272 2826 1043 137 6 6 chr3 102933111 102933286 -124591292 - MER89 LTR ERV1 0 559 385 1662 155 14 20 chr3 102933299 102933596 -124590982 + AluSq SINE Alu 2 296 -17 986 193 8 42 chr3 102934091 102934350 -124590228 - LTR16C LTR ERVL -9 482 233 207 170 0 0 chr3 102935657 102935704 -124588874 + A-rich Low_complexity Low_complexity 1 47 0 773 135 0 0 chr3 102935929 102936040 -124588538 + FLAM_C SINE Alu 1 111 -32 23 0 0 0 chr3 102936391 102936414 -124588164 + AT_rich Low_complexity Low_complexity 1 23 0 1720 176 3 11 chr3 102936422 102936706 -124587872 + AluJb SINE Alu 21 302 -10 1584 182 17 57 chr3 102937062 102937413 -124587165 + LTR10B LTR ERV1 211 547 0 1150 196 61 5 chr3 102937413 102937694 -124586884 - MSTB LTR MaLR -100 328 1 1339 211 65 16 chr3 102937694 102938016 -124586562 + MLT1C LTR MaLR 130 467 0 1729 155 7 18 chr3 102938063 102938199 -124586379 + AluJb SINE Alu 1 137 -175 1820 107 3 57 chr3 102938199 102938335 -124586243 + AluSx SINE Alu 1 143 -169 1805 135 68 0 chr3 102938335 102938616 -124585962 + AluSx SINE Alu 1 300 -12 1820 107 3 57 chr3 102938616 102938797 -124585781 + AluSx SINE Alu 143 301 -11 1729 155 7 18 chr3 102938797 102938938 -124585640 + AluJb SINE Alu 137 275 -37 460 125 11 34 chr3 102939079 102939167 -124585411 - LTR44 LTR ERV1 -408 111 26 861 115 47 0 chr3 102939207 102939355 -124585223 - Tigger3(Golem) DNA MER2_type -300 2729 2575 1364 126 10 5 chr3 102939375 102939581 -124584997 - AluJb SINE Alu -17 295 89 1312 138 14 14 chr3 102939602 102939812 -124584766 - AluJo SINE Alu -18 294 85 509 92 41 0 chr3 102939819 102939917 -124584661 - Tigger3(Golem) DNA MER2_type -468 2561 2460 1021 117 23 35 chr3 102939917 102939933 -124584645 + AluSg/x SINE Alu 122 137 -175 1984 116 10 3 chr3 102939933 102940226 -124584352 + AluSg1 SINE Alu 1 295 -14 1021 117 23 35 chr3 102940226 102940380 -124584198 + AluSg/x SINE Alu 137 290 -22 3009 123 25 4 chr3 102940904 102941392 -124583186 - L1PB3 LINE L1 -50 6104 5607 5836 52 10 0 chr3 102941392 102942084 -124582494 + LTR5 LTR ERVK 1 699 -270 1510 201 24 7 chr3 102942346 102942639 -124581939 - AluJo SINE Alu -14 298 1 1845 174 16 0 chr3 102942772 102943077 -124581501 + AluJo SINE Alu 1 310 -2 25 0 0 0 chr3 102943645 102943670 -124580908 + AT_rich Low_complexity Low_complexity 1 25 0 435 341 54 0 chr3 102944214 102944381 -124580197 + MER5B DNA MER1_type 2 177 -1 1943 144 4 0 chr3 102944451 102944754 -124579824 + AluSx SINE Alu 3 306 0 1882 162 7 3 chr3 102945488 102945778 -124578800 + AluJb SINE Alu 1 291 -21 468 0 0 0 chr3 102945805 102945857 -124578721 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 393 267 12 0 chr3 102945914 102946000 -124578578 - MIR SINE MIR -105 157 71 444 279 121 12 chr3 102946112 102946286 -124578292 + MIR SINE MIR 1 192 -63 261 330 0 10 chr3 102946434 102946534 -124578044 - MIR SINE MIR -1 261 163 1911 151 3 20 chr3 102947698 102948003 -124576575 - AluJb SINE Alu -12 300 1 228 278 33 33 chr3 102948194 102948284 -124576294 + L2 LINE L2 2684 2773 -541 374 145 0 0 chr3 102948791 102948853 -124575725 - LTR10E LTR ERV1 -362 271 210 711 21 11 0 chr3 102948854 102948948 -124575630 - LTR10E LTR ERV1 -538 95 1 2686 282 20 22 chr3 102949009 102949923 -124574655 - HERVI LTR ERV1 -138 7647 6736 912 190 0 0 chr3 102950166 102950324 -124574254 - AluSq SINE Alu -25 288 131 1477 102 0 15 chr3 102950336 102950541 -124574037 - AluSg/x SINE Alu -6 306 105 1983 134 38 24 chr3 102950554 102950927 -124573651 - LTR10E LTR ERV1 -1 632 255 543 167 0 0 chr3 102951333 102951423 -124573155 + AluSg/x SINE Alu 211 300 -9 336 24 0 0 chr3 102951423 102951464 -124573114 + (CA)n Simple_repeat Simple_repeat 2 42 0 2009 170 22 38 chr3 102951553 102952006 -124572572 + L1MB8 LINE L1 5733 6178 0 558 146 0 99 chr3 102952017 102952188 -124572390 + AluYb8 SINE Alu 1 154 -164 207 0 0 0 chr3 102952362 102952385 -124572193 + (A)n Simple_repeat Simple_repeat 1 23 0 241 180 229 0 chr3 102952682 102952743 -124571835 - FLAM_A SINE Alu -18 115 41 697 151 0 0 chr3 102952744 102952850 -124571728 - AluSq/x SINE Alu -202 111 6 1265 142 0 0 chr3 102952850 102953054 -124571524 - L1PB4 LINE L1 -152 6004 5801 310 113 38 0 chr3 102953056 102953109 -124571469 + LTR24B LTR ERV1 517 571 -5 275 259 96 30 chr3 102953202 102953368 -124571210 - L1MC5 LINE L1 -477 7484 7308 686 279 161 49 chr3 102954070 102954515 -124570063 + MLT1G1 LTR MaLR 1 546 -49 260 278 161 19 chr3 102955249 102955411 -124569167 + MER112 DNA MER1_type 64 248 -12 276 182 34 0 chr3 102956871 102956959 -124567619 + CT-rich Low_complexity Low_complexity 2 92 0 503 336 116 12 chr3 102957081 102957426 -124567152 + L2 LINE L2 2152 2532 -782 186 103 0 0 chr3 102957526 102957555 -124567023 + (TA)n Simple_repeat Simple_repeat 1 29 0 2284 93 3 3 chr3 102957792 102958093 -124566485 + AluY SINE Alu 3 303 -8 26 0 0 0 chr3 102958179 102958205 -124566373 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr3 102958424 102958449 -124566129 + AT_rich Low_complexity Low_complexity 1 25 0 28 0 0 0 chr3 102958652 102958680 -124565898 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 102958776 102958797 -124565781 + AT_rich Low_complexity Low_complexity 1 21 0 194 313 0 0 chr3 102958894 102958942 -124565636 - MIR3 SINE MIR -10 198 151 21 0 0 0 chr3 102959777 102959798 -124564780 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 102959940 102959962 -124564616 + AT_rich Low_complexity Low_complexity 1 22 0 339 348 8 0 chr3 102960844 102960962 -124563616 - L2 LINE L2 -4 3309 3191 2571 207 2 21 chr3 102961046 102961568 -124563010 - MLT2B1 LTR ERVL -5 515 4 238 355 75 9 chr3 102961744 102961851 -124562727 + MER5B DNA MER1_type 1 114 -64 425 328 55 25 chr3 102962483 102962718 -124561860 + MIR SINE MIR 3 244 -18 2155 104 7 0 chr3 102963320 102963644 -124560934 - AluSc SINE Alu 0 326 1 2016 154 30 28 chr3 102963697 102964060 -124560518 - THE1B LTR MaLR 0 364 1 22 0 0 0 chr3 102966946 102966968 -124557610 + AT_rich Low_complexity Low_complexity 1 22 0 4945 170 39 17 chr3 102967079 102968249 -124556329 + L1MC1 LINE L1 5141 6333 0 330 26 0 0 chr3 102969643 102969682 -124554896 + (TG)n Simple_repeat Simple_repeat 1 39 0 224 75 0 25 chr3 102969682 102969722 -124554856 + (GA)n Simple_repeat Simple_repeat 2 40 0 2292 97 44 0 chr3 102970100 102970440 -124554138 + THE1A LTR MaLR 1 355 0 10953 104 14 26 chr3 102970441 102970937 -124553641 + THE1A-int LTR MaLR 2 502 -1078 2151 128 3 10 chr3 102970937 102971249 -124553329 + AluSx SINE Alu 1 310 -2 10953 104 14 26 chr3 102971249 102972350 -124552228 + THE1A-int LTR MaLR 502 1580 0 2629 96 6 0 chr3 102972350 102972703 -124551875 + THE1A LTR MaLR 1 355 0 327 319 55 38 chr3 102974234 102974472 -124550106 + L1ME LINE L1 2162 2403 -3993 21 0 0 0 chr3 102974814 102974835 -124549743 + AT_rich Low_complexity Low_complexity 1 21 0 309 255 36 94 chr3 102974936 102975128 -124549450 + L1ME LINE L1 5374 5554 -2510 259 185 49 49 chr3 102975314 102975395 -124549183 + L1ME LINE L1 5796 5876 -314 234 190 0 78 chr3 102975503 102975717 -124548861 + (TTATA)n Simple_repeat Simple_repeat 1 197 0 28 62 0 52 chr3 102975811 102975908 -124548670 + AT_rich Low_complexity Low_complexity 1 92 0 181 321 12 12 chr3 102976719 102976800 -124547778 - MIR3 SINE MIR -1 207 127 23 0 0 0 chr3 102976968 102976991 -124547587 + AT_rich Low_complexity Low_complexity 1 23 0 1707 265 106 22 chr3 102977235 102977999 -124546579 - L1ME3A LINE L1 -30 6209 5370 52 30 0 0 chr3 102978085 102978151 -124546427 + AT_rich Low_complexity Low_complexity 1 66 0 399 117 76 7 chr3 102978165 102978310 -124546268 + (TA)n Simple_repeat Simple_repeat 1 155 0 296 142 34 125 chr3 102978327 102978503 -124546075 + (TATTG)n Simple_repeat Simple_repeat 3 162 0 * 416 236 60 0 chr3 102978383 102978720 -124545858 + (TTATA)n Simple_repeat Simple_repeat 1 357 0 514 55 10 119 chr3 102978724 102978925 -124545653 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 324 140 80 0 chr3 102978928 102979028 -124545550 + (TA)n Simple_repeat Simple_repeat 1 108 0 19035 156 25 53 chr3 102979124 102982844 -124541734 + L1MA3 LINE L1 26 3640 -3925 6382 149 20 5 chr3 102982846 102982904 -124541674 + L1MA3 LINE L1 6340 6396 -1328 216 0 0 0 chr3 102982904 102982928 -124541650 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 6382 149 20 5 chr3 102982928 102984232 -124540346 + L1MA3 LINE L1 6396 7724 0 964 290 66 50 chr3 102984293 102984787 -124539791 - L1ME3A LINE L1 -931 5284 4768 2397 119 24 14 chr3 102984787 102985158 -124539420 + THE1C LTR MaLR 1 375 0 964 290 66 50 chr3 102985158 102985542 -124539036 - L1ME3A LINE L1 -1447 4768 4392 613 286 130 5 chr3 102985582 102986167 -124538411 - L1MEc LINE L1 -3558 2657 2029 443 298 59 74 chr3 102986319 102986456 -124538122 - L1MEc LINE L1 -4591 1805 1668 1569 116 0 4 chr3 102986456 102986681 -124537897 + AluSx SINE Alu 54 277 -35 443 298 59 74 chr3 102986681 102987122 -124537456 - L1MEc LINE L1 -4728 1668 1246 1228 220 110 0 chr3 102987122 102987431 -124537147 + MER2 DNA MER2_type 1 343 -1 443 298 59 74 chr3 102987431 102987883 -124536695 - L1MEc LINE L1 -5150 1246 789 207 125 0 0 chr3 102989064 102989104 -124535474 + (TA)n Simple_repeat Simple_repeat 2 41 0 260 217 0 0 chr3 102989188 102989248 -124535330 + (TA)n Simple_repeat Simple_repeat 1 60 0 1748 267 78 29 chr3 102989289 102989878 -124534700 - MER21B LTR ERV1 -109 754 137 23 0 0 0 chr3 102989958 102989981 -124534597 + AT_rich Low_complexity Low_complexity 1 23 0 325 229 105 23 chr3 102990012 102990150 -124534428 + MIR SINE MIR 27 172 -68 213 231 51 39 chr3 102990881 102990959 -124533619 + GA-rich Low_complexity Low_complexity 1 79 0 21 0 0 0 chr3 102992053 102992074 -124532504 + AT_rich Low_complexity Low_complexity 1 21 0 24 53 0 0 chr3 102992386 102992424 -124532154 + AT_rich Low_complexity Low_complexity 1 38 0 196 313 133 12 chr3 102992518 102992601 -124531977 - L2 LINE L2 -31 3282 3190 425 273 61 0 chr3 102992974 102993106 -124531472 - L2 LINE L2 0 3313 3174 353 258 92 26 chr3 102993280 102993653 -124530925 + MLT1G1 LTR MaLR 156 587 -8 449 281 99 51 chr3 102993660 102993994 -124530584 - L2 LINE L2 -129 3184 2835 256 304 14 0 chr3 102995908 102995977 -124528601 + MER5A DNA MER1_type 120 189 0 26 0 0 0 chr3 102996679 102996705 -124527873 + AT_rich Low_complexity Low_complexity 1 26 0 2822 3 0 3 chr3 102996705 102997017 -124527561 - AluYa5 SINE Alu 0 311 1 230 365 28 0 chr3 102997029 102997136 -124527442 + L2 LINE L2 2403 2512 -802 189 0 0 0 chr3 102998506 102998527 -124526051 + (TGG)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr3 102999117 102999142 -124525436 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr3 102999231 102999251 -124525327 + (A)n Simple_repeat Simple_repeat 1 20 0 498 239 37 32 chr3 102999829 103000017 -124524561 - MER5A DNA MER1_type 0 189 1 2043 144 0 0 chr3 103000723 103001036 -124523542 - AluSq SINE Alu 0 313 1 7425 221 31 49 chr3 103001036 103003725 -124520853 - L1MB3 LINE L1 -352 5831 3202 1880 215 80 22 chr3 103003765 103004254 -124520324 + MLT2B1 LTR ERVL 4 520 0 872 311 47 40 chr3 103004285 103004687 -124519891 - HERV16 LTR ERVL -3874 1122 718 296 96 19 39 chr3 103005561 103005613 -124518965 - MER58C DNA MER1_type -5 210 160 * 362 250 34 62 chr3 103005608 103005784 -124518794 - MER58C DNA MER1_type -14 201 31 2061 137 0 3 chr3 103006056 103006349 -124518229 + AluSx SINE Alu 1 292 -20 2186 245 58 35 chr3 103006503 103007462 -124517116 - L1ME1 LINE L1 -25 6141 5155 325 242 44 11 chr3 103007472 103007563 -124517015 + L1MC4 LINE L1 6610 6703 -1339 180 0 0 0 chr3 103007634 103007654 -124516924 + (CA)n Simple_repeat Simple_repeat 1 20 0 1714 91 12 0 chr3 103007736 103007978 -124516600 - AluY SINE Alu -6 305 61 258 304 29 20 chr3 103009207 103009309 -124515269 + 5S rRNA rRNA 9 111 -10 1495 224 26 6 chr3 103009520 103009869 -124514709 - L1MB3 LINE L1 -9 6174 5819 2136 119 3 0 chr3 103009869 103010172 -124514406 - AluSx SINE Alu -8 304 1 323 278 191 0 chr3 103010182 103010344 -124514234 - L1MB3 LINE L1 -1200 4946 4754 227 178 0 0 chr3 103010957 103011002 -124513576 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 25 31 0 0 chr3 103011762 103011794 -124512784 + AT_rich Low_complexity Low_complexity 1 32 0 359 283 253 0 chr3 103012479 103012645 -124511933 - MIR SINE MIR -3 259 52 1601 267 26 40 chr3 103012799 103013304 -124511274 + L1MDa LINE L1 18 515 -6025 1293 117 89 0 chr3 103013565 103013779 -124510799 + L1PA8 LINE L1 5938 6170 -2 34 24 0 0 chr3 103014130 103014171 -124510407 + AT_rich Low_complexity Low_complexity 1 41 0 1558 262 29 43 chr3 103015197 103015685 -124508893 + L1 LINE L1 358 838 -6728 9784 184 39 12 chr3 103015687 103017822 -124506756 + L1 LINE L1 4478 6670 -895 6683 138 8 38 chr3 103017833 103018958 -124505620 + THE1-int LTR MaLR 259 1349 -231 5887 155 39 16 chr3 103018957 103019178 -124505400 + L1M2b LINE L1 2179 2394 -5171 * 1949 165 25 22 chr3 103019178 103019541 -124505037 - THE1B LTR MaLR 0 364 1 5887 155 39 16 chr3 103019541 103020529 -124504049 + L1M2b LINE L1 2394 3415 -4150 28 61 0 0 chr3 103020665 103020714 -124503864 + AT_rich Low_complexity Low_complexity 1 49 0 268 342 36 0 chr3 103021026 103021137 -124503441 + MIR SINE MIR 47 161 -101 1956 105 4 0 chr3 103021873 103022139 -124502439 + AluSx SINE Alu 20 286 -26 1403 193 3 31 chr3 103022164 103022454 -124502124 + AluJb SINE Alu 3 284 -18 22 0 0 0 chr3 103023072 103023094 -124501484 + AT_rich Low_complexity Low_complexity 1 22 0 267 279 9 36 chr3 103025022 103025133 -124499445 - L1MB3 LINE L1 -2281 3865 3758 231 286 118 17 chr3 103027386 103027505 -124497073 - MIR SINE MIR -108 154 24 264 294 15 0 chr3 103027765 103027833 -124496745 - MIR3 SINE MIR -48 160 92 381 262 14 13 chr3 103028156 103028298 -124496280 - LTR37A LTR ERV1 -31 437 278 1165 249 72 72 chr3 103028357 103028822 -124495756 + L1M4b LINE L1 4 532 -6327 1795 152 62 18 chr3 103029257 103029593 -124494985 + MLT1A1 LTR MaLR 13 363 -2 28 29 0 0 chr3 103029665 103029700 -124494878 + AT_rich Low_complexity Low_complexity 1 35 0 2267 78 0 47 chr3 103030181 103030501 -124494077 + AluY SINE Alu 1 305 -6 22 0 0 0 chr3 103032128 103032150 -124492428 + AT_rich Low_complexity Low_complexity 1 22 0 37 69 0 0 chr3 103034339 103034411 -124490167 + AT_rich Low_complexity Low_complexity 1 72 0 234 0 0 0 chr3 103034560 103034586 -124489992 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 7564 24 0 2 chr3 103034586 103036178 -124488400 - L1PA3 LINE L1 -10 6145 4557 997 136 23 0 chr3 103036294 103036470 -124488108 + THE1B-int LTR MaLR 1401 1580 0 1553 167 113 27 chr3 103036470 103036805 -124487773 + THE1B LTR MaLR 1 364 0 9419 210 16 11 chr3 103036806 103039016 -124485562 + L1 LINE L1 2118 4337 -1809 235 65 0 0 chr3 103039016 103039047 -124485531 - L1PB2 LINE L1 -163 5988 5958 1049 246 41 17 chr3 103039189 103039376 -124485202 + L1M4b LINE L1 660 858 -6001 2828 171 98 12 chr3 103039376 103039939 -124484639 + LTR36 LTR ERV1 1 611 0 1049 246 41 17 chr3 103039939 103040044 -124484534 + L1M4b LINE L1 858 959 -5900 3212 150 14 48 chr3 103040044 103040632 -124483946 + MER50 LTR ERV1 1 568 -166 3264 121 53 36 chr3 103040632 103041212 -124483366 - LTR8 LTR ERV1 0 691 102 1079 110 0 0 chr3 103041369 103041514 -124483064 - LTR8 LTR ERV1 -546 145 1 799 139 73 0 chr3 103041514 103041651 -124482927 + MER50 LTR ERV1 565 711 -23 2205 236 70 19 chr3 103041652 103042227 -124482351 + L1M4b LINE L1 956 1559 -5300 6876 238 15 17 chr3 103042251 103043396 -124481182 + L1PBa LINE L1 3 1149 -5714 1952 140 67 17 chr3 103043396 103043753 -124480825 - THE1C LTR MaLR 0 375 1 9113 127 75 8 chr3 103043753 103045234 -124479344 - THE1C-int LTR MaLR 0 1580 1 2379 129 13 8 chr3 103045234 103045607 -124478971 - THE1C LTR MaLR 0 375 1 6876 238 15 17 chr3 103045607 103046099 -124478479 + L1PBa LINE L1 1146 1639 -5224 1748 253 29 5 chr3 103046070 103046453 -124478125 + L1PB2 LINE L1 660 1051 -5812 * 2199 124 30 54 chr3 103046454 103046826 -124477752 - THE1B LTR MaLR 0 364 2 10103 119 40 18 chr3 103046827 103047971 -124476607 - THE1B-int LTR MaLR 0 1580 392 2040 164 11 6 chr3 103047971 103048324 -124476254 - THE1A LTR MaLR 0 355 1 10103 119 40 18 chr3 103048324 103048725 -124475853 - THE1B-int LTR MaLR -1188 392 1 2295 134 31 14 chr3 103048725 103049083 -124475495 - THE1B LTR MaLR 0 364 1 1715 167 4 0 chr3 103049083 103049347 -124475231 + L1PB2 LINE L1 1051 1315 -5548 242 135 0 0 chr3 103049349 103049386 -124475192 + L1PB2 LINE L1 2935 2971 -3892 * 1334 194 6 65 chr3 103049355 103049711 -124474867 + L1M4b LINE L1 3036 3370 -3587 6531 184 31 17 chr3 103049931 103050976 -124473602 + L1PB2 LINE L1 4381 5410 -1552 210 37 0 0 chr3 103050976 103051003 -124473575 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 6531 184 31 17 chr3 103051003 103051716 -124472862 + L1PB2 LINE L1 5410 6111 -851 319 31 77 0 chr3 103051716 103051781 -124472797 + (TA)n Simple_repeat Simple_repeat 2 71 0 6531 184 31 17 chr3 103051781 103052524 -124472054 + L1PB2 LINE L1 6111 6908 -54 1908 152 0 13 chr3 103052524 103052826 -124471752 + AluSx SINE Alu 1 298 -14 6531 184 31 17 chr3 103052826 103052880 -124471698 + L1PB2 LINE L1 6908 6960 -2 712 208 49 99 chr3 103052960 103053244 -124471334 - LTR37B LTR ERV1 -193 275 6 259 273 190 41 chr3 103053617 103053738 -124470840 - MER5A DNA MER1_type -3 186 48 1166 210 95 33 chr3 103053838 103054205 -124470373 - Charlie5 DNA MER1_type 0 2624 2235 506 195 10 0 chr3 103054202 103054333 -124470245 - Charlie5 DNA MER1_type -2495 117 1 * 681 236 91 0 chr3 103054477 103054642 -124469936 - MER63A DNA MER1_type -29 181 2 549 315 160 30 chr3 103054713 103055163 -124469415 + L2 LINE L2 2778 3299 -14 438 373 73 21 chr3 103055169 103055593 -124468985 - L2 LINE L2 -754 2560 2115 276 295 0 13 chr3 103057312 103057390 -124467188 + MER63 DNA MER1_type 5 707 -129 252 86 0 0 chr3 103057525 103057560 -124467018 + (TA)n Simple_repeat Simple_repeat 1 35 0 369 196 19 9 chr3 103057573 103057680 -124466898 + (TA)n Simple_repeat Simple_repeat 1 108 0 234 197 0 14 chr3 103057680 103057751 -124466827 - L1MCa LINE L1 -4362 2064 1995 181 26 26 77 chr3 103057828 103057867 -124466711 + (TAA)n Simple_repeat Simple_repeat 3 39 0 214 326 57 64 chr3 103058041 103058182 -124466396 - MIR3 SINE MIR -6 202 63 731 208 33 0 chr3 103058437 103058620 -124465958 - MER53 DNA DNA 0 189 1 1367 132 18 0 chr3 103059116 103059335 -124465243 + L1P LINE L1 3343 3565 -2581 1482 159 3 44 chr3 103059938 103060002 -124464576 - L1PB4 LINE L1 -1 6155 6090 558 24 0 36 chr3 103060002 103060085 -124464493 + (TA)n Simple_repeat Simple_repeat 1 80 0 1482 159 3 44 chr3 103060085 103060315 -124464263 - L1PB4 LINE L1 -66 6090 5873 389 186 0 0 chr3 103060315 103060385 -124464193 + L1P LINE L1 3416 3485 -2661 315 0 0 0 chr3 103060414 103060449 -124464129 + (TC)n Simple_repeat Simple_repeat 1 35 0 846 166 11 57 chr3 103060449 103060616 -124463962 + THE1B LTR MaLR 201 361 -3 1781 262 8 2 chr3 103060624 103061109 -124463469 - L1P LINE L1 -3106 4478 3991 4502 240 46 31 chr3 103061393 103062769 -124461809 - L1PA15-16 LINE L1 -3444 4140 2720 216 0 0 0 chr3 103062769 103062793 -124461785 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 4502 240 46 31 chr3 103062793 103063047 -124461531 - L1PA15-16 LINE L1 -4864 2720 2471 3364 279 60 8 chr3 103063105 103064048 -124460530 - L1PA15-16 LINE L1 -5651 1930 939 2301 170 12 12 chr3 103064058 103064487 -124460091 - L1PB4 LINE L1 -373 5783 5355 24 53 0 0 chr3 103064740 103064778 -124459800 + AT_rich Low_complexity Low_complexity 1 38 0 1017 289 106 61 chr3 103065290 103066054 -124458524 - L1ME LINE L1 -4074 2187 1459 2051 108 7 3 chr3 103066054 103066341 -124458237 + AluSx SINE Alu 11 298 -14 1017 289 106 61 chr3 103066341 103067600 -124456978 - L1ME LINE L1 -4802 1459 19 578 267 11 52 chr3 103068188 103068274 -124456304 - L1MA9 LINE L1 -46 6266 6178 2332 116 37 8 chr3 103068274 103068628 -124455950 - THE1B LTR MaLR 0 364 1 578 267 11 52 chr3 103068628 103068811 -124455767 - L1MA9 LINE L1 -134 6178 6008 189 0 0 0 chr3 103069585 103069606 -124454972 + (TA)n Simple_repeat Simple_repeat 2 22 0 1553 134 0 4 chr3 103070165 103070397 -124454181 + AluSg/x SINE Alu 75 305 -5 382 221 77 0 chr3 103070397 103070501 -124454077 - L1MA6 LINE L1 -182 6118 6007 5120 261 56 59 chr3 103070506 103073151 -124451427 - L1M4 LINE L1 -964 5182 2545 2250 197 28 59 chr3 103073168 103073598 -124450980 + L1PBb LINE L1 452 851 -5353 2178 131 0 3 chr3 103073598 103073910 -124450668 + AluSx SINE Alu 1 311 -1 2250 197 28 59 chr3 103073910 103074181 -124450397 + L1PBb LINE L1 851 1129 -5075 580 214 9 0 chr3 103074291 103074403 -124450175 + Tigger1 DNA MER2_type 2120 2232 -186 919 182 24 6 chr3 103074427 103074597 -124449981 - L1PB4 LINE L1 -14 6142 5970 1270 131 0 0 chr3 103074597 103074773 -124449805 - AluSg/x SINE Alu -12 300 125 3278 151 16 3 chr3 103074773 103075745 -124448833 - L1PB4 LINE L1 -382 5786 4801 1810 218 26 9 chr3 103075746 103076340 -124448238 + L1 LINE L1 4347 4967 -1179 315 198 48 24 chr3 103076608 103076734 -124447844 - L1MEc LINE L1 -4187 2209 2081 2104 281 71 28 chr3 103076974 103077977 -124446601 - L1MEc LINE L1 -5127 1269 202 538 379 44 3 chr3 103079678 103079976 -124444602 + L2 LINE L2 95 404 -2910 505 322 238 28 chr3 103080066 103080807 -124443771 + L2 LINE L2 1681 2578 -736 203 339 127 42 chr3 103080807 103080925 -124443653 + MER91A DNA MER1_type 1 128 -68 23 0 0 0 chr3 103080944 103080967 -124443611 + AT_rich Low_complexity Low_complexity 1 23 0 304 309 79 62 chr3 103081036 103081214 -124443364 + L2 LINE L2 2565 2745 -569 403 254 130 14 chr3 103081514 103081652 -124442926 + L2 LINE L2 3158 3311 -2 23 54 0 0 chr3 103081767 103081804 -124442774 + AT_rich Low_complexity Low_complexity 1 37 0 380 318 73 22 chr3 103082532 103082711 -124441867 + MIR SINE MIR 49 236 -26 265 183 0 32 chr3 103082815 103082908 -124441670 + L1M1 LINE L1 3360 3449 -4116 706 208 6 6 chr3 103082959 103083132 -124441446 + L1MA4 LINE L1 6123 6295 -5 234 235 163 48 chr3 103083468 103083634 -124440944 + L1ME LINE L1 5618 5802 -360 21 36 0 0 chr3 103084269 103084297 -124440281 + AT_rich Low_complexity Low_complexity 1 28 0 26 93 0 0 chr3 103084836 103084911 -124439667 + AT_rich Low_complexity Low_complexity 1 75 0 228 333 36 29 chr3 103085944 103086082 -124438496 - MIR SINE MIR -35 227 89 425 320 40 11 chr3 103087129 103087451 -124437127 - MLT1L LTR MaLR -69 546 155 433 225 29 13 chr3 103088310 103088626 -124435952 + (TA)n Simple_repeat Simple_repeat 1 321 0 226 351 30 45 chr3 103089919 103090053 -124434525 - L2 LINE L2 -5 3267 3136 221 194 0 28 chr3 103090441 103090513 -124434065 + GA-rich Low_complexity Low_complexity 1 70 0 365 306 36 46 chr3 103091631 103091827 -124432751 - MIR SINE MIR 0 262 69 452 143 12 0 chr3 103092207 103092291 -124432287 + GA-rich Low_complexity Low_complexity 1 85 0 822 293 74 52 chr3 103092646 103093162 -124431416 - MLT1H LTR MaLR -2 547 21 215 204 37 0 chr3 103093202 103093256 -124431322 + L2 LINE L2 1649 1704 -1610 1777 165 64 36 chr3 103093278 103093636 -124430942 + THE1C LTR MaLR 8 375 0 833 236 64 4 chr3 103093660 103093910 -124430668 + L2 LINE L2 1770 2034 -1280 432 316 13 13 chr3 103093910 103094062 -124430516 + LTR16B LTR ERVL 3 154 -310 4917 181 42 33 chr3 103094194 103096195 -124428383 - L1MA9 LINE L1 0 6312 4284 2032 94 0 0 chr3 103096195 103096472 -124428106 - L1PA7 LINE L1 -89 6065 5789 220 337 48 0 chr3 103096481 103096564 -124428014 + MIR SINE MIR 126 212 -50 35586 59 29 2 chr3 103097724 103102366 -124422212 + L1P LINE L1 1 4766 -1380 4901 237 24 23 chr3 103102425 103102608 -124421970 - L1MA9 LINE L1 -1803 4343 4162 1971 115 11 0 chr3 103102608 103102910 -124421668 - AluSx SINE Alu 0 305 1 4901 237 24 23 chr3 103102910 103104166 -124420412 - L1MA9 LINE L1 -1984 4162 2902 305 245 25 69 chr3 103105334 103105493 -124419085 + MER113 DNA MER1_type? 50 201 -320 733 309 77 43 chr3 103105493 103105869 -124418709 + MLT1J LTR MaLR 3 391 -120 1304 187 132 3 chr3 103105870 103106314 -124418264 + MER74A LTR ERVL 2 558 0 234 133 100 33 chr3 103106314 103106374 -124418204 + MLT1J LTR MaLR 390 453 -58 5064 45 8 0 chr3 103106480 103107145 -124417433 - L1PA5 LINE L1 -281 5873 5205 1475 209 108 39 chr3 103109494 103110002 -124414576 - MLT1H LTR MaLR -3 546 4 258 279 38 13 chr3 103111032 103111111 -124413467 - MIR SINE MIR -70 192 112 278 251 1 37 chr3 103112492 103112579 -124411999 + MER58 DNA MER1_type 128 2418 -2 348 320 115 43 chr3 103112594 103112941 -124411637 + L1M4c LINE L1 1265 1636 -4748 806 237 51 15 chr3 103114088 103114362 -124410216 + L1MB3 LINE L1 5898 6181 -2 1104 139 6 0 chr3 103114513 103114679 -124409899 + AluSg/x SINE Alu 135 301 -11 2472 183 48 11 chr3 103114694 103115391 -124409187 + L1MD1 LINE L1 5317 6081 -161 1249 202 64 0 chr3 103115783 103116065 -124408513 + L1MA5 LINE L1 6001 6300 0 730 211 15 5 chr3 103116104 103116303 -124408275 - L1M4c LINE L1 -4031 2353 2153 958 205 26 46 chr3 103116306 103116608 -124407970 - AluY SINE Alu -1 300 5 6314 138 17 2 chr3 103116926 103117918 -124406660 + THE1-int LTR MaLR 197 1203 -377 639 217 45 19 chr3 103119243 103119400 -124405178 + MLT1J LTR MaLR 345 505 0 1360 243 145 50 chr3 103119409 103120128 -124404450 - HAL1 LINE L1 -1009 1498 712 238 273 85 51 chr3 103120171 103120347 -124404231 - HAL1 LINE L1 -1880 627 446 200 239 22 0 chr3 103120566 103120612 -124403966 + L2 LINE L2 3226 3272 0 1046 221 109 39 chr3 103120939 103121251 -124403327 + MSTD LTR MaLR 1 334 -62 1414 206 15 4 chr3 103122888 103123155 -124401423 + AluJb SINE Alu 28 297 -15 1497 139 119 12 chr3 103123157 103123409 -124401169 + AluSg SINE Alu 1 279 -31 8459 169 41 29 chr3 103123960 103124215 -124400363 - L1PA15-16 LINE L1 -4183 2666 2415 1832 173 17 0 chr3 103124215 103124516 -124400062 + AluSq SINE Alu 1 306 -7 8459 169 41 29 chr3 103124516 103127256 -124397322 - L1PA15-16 LINE L1 -4434 2415 3 785 306 138 28 chr3 103127260 103127294 -124397284 - L2 LINE L2 -952 2362 2333 1906 181 28 11 chr3 103127294 103127653 -124396925 + MLT1A1 LTR MaLR 1 365 0 785 306 138 28 chr3 103127653 103128052 -124396526 - L2 LINE L2 -981 2333 1881 1008 348 75 32 chr3 103128530 103129246 -124395332 + L2 LINE L2 950 1696 -1618 219 319 0 0 chr3 103129288 103129357 -124395221 + L2 LINE L2 1782 1850 -1464 562 204 81 29 chr3 103129359 103129531 -124395047 + L1ME2 LINE L1 5984 6164 0 1500 244 56 14 chr3 103131058 103131504 -124393074 - MLT1C LTR MaLR -2 465 1 486 281 33 0 chr3 103131729 103131882 -124392696 - L1MD2 LINE L1 0 6359 6202 406 278 6 43 chr3 103131891 103132025 -124392553 - L1MD2 LINE L1 -157 6085 6007 2128 132 0 0 chr3 103132242 103132537 -124392041 - AluSg SINE Alu -15 295 1 6149 99 29 7 chr3 103132544 103133871 -124390707 - L1PA10 LINE L1 -10 6158 4801 5358 182 8 21 chr3 103133872 103134765 -124389813 + L1PA16 LINE L1 4347 5250 -916 2072 153 31 19 chr3 103134765 103135125 -124389453 - THE1B LTR MaLR 0 364 1 11350 104 8 7 chr3 103135125 103136704 -124387874 - THE1B-int LTR MaLR 0 1580 1 1888 181 31 19 chr3 103136704 103137064 -124387514 - THE1B LTR MaLR 0 364 1 5358 182 8 21 chr3 103137064 103137994 -124386584 + L1PA16 LINE L1 5247 6149 -17 24 32 0 0 chr3 103137998 103138029 -124386549 + AT_rich Low_complexity Low_complexity 1 31 0 1146 342 76 7 chr3 103138029 103138488 -124386090 + L2 LINE L2 2349 2839 -475 900 126 0 0 chr3 103138510 103138637 -124385941 - THE1B LTR MaLR -165 199 73 626 304 41 0 chr3 103138639 103138810 -124385768 + L2 LINE L2 2859 3036 -277 1064 97 0 0 chr3 103140007 103140141 -124384437 + AluSc SINE Alu 1 134 -175 497 119 0 12 chr3 103140478 103140562 -124384016 + (TTCC)n Simple_repeat Simple_repeat 4 86 0 189 94 0 0 chr3 103140593 103140625 -124383953 + (CTG)n Simple_repeat Simple_repeat 1 32 0 975 121 6 11 chr3 103140626 103140800 -124383778 + (TTC)n Simple_repeat Simple_repeat 2 174 0 2098 173 21 3 chr3 103140802 103141177 -124383401 - L1PA15 LINE L1 -15 6150 5769 4634 184 43 38 chr3 103141543 103143339 -124381239 - L1PA15 LINE L1 -368 5798 3997 1906 174 40 11 chr3 103145825 103146204 -124378374 - MLT1B LTR MaLR 0 390 1 333 357 39 16 chr3 103146317 103146446 -124378132 + L2 LINE L2 3141 3272 0 253 258 3 0 chr3 103146587 103146657 -124377921 - Charlie8 DNA MER1_type -995 1422 1368 252 304 14 0 chr3 103149142 103149211 -124375367 + MER5A DNA MER1_type 120 189 0 2152 116 0 3 chr3 103149932 103150242 -124374336 - AluYa5 SINE Alu 0 311 3 216 365 28 0 chr3 103150257 103150364 -124374214 + L2 LINE L2 2403 2512 -802 2865 3 0 3 chr3 103150736 103151048 -124373530 - AluYa5 SINE Alu 0 311 1 226 365 28 0 chr3 103151061 103151168 -124373410 + L2 LINE L2 2403 2512 -802 189 0 0 0 chr3 103152538 103152559 -124372019 + (TGG)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr3 103153149 103153174 -124371404 + AT_rich Low_complexity Low_complexity 1 25 0 198 0 0 0 chr3 103153263 103153285 -124371293 + (A)n Simple_repeat Simple_repeat 1 22 0 517 239 37 32 chr3 103153863 103154051 -124370527 - MER5A DNA MER1_type 0 189 1 2135 131 0 0 chr3 103154757 103155070 -124369508 - AluSq SINE Alu 0 313 1 1109 228 11 52 chr3 103155278 103155625 -124368953 - L1MD3 LINE L1 -14 7981 7649 1782 142 3 82 chr3 103155739 103156069 -124368509 + AluSx SINE Alu 1 304 -8 2000 140 3 19 chr3 103156196 103156504 -124368074 + AluSx SINE Alu 3 305 -7 320 309 28 39 chr3 103158522 103158703 -124365875 - MLT1J2 LTR MaLR 0 450 272 926 216 0 28 chr3 103159340 103159521 -124365057 + Tigger7 DNA MER2_type 1 176 -529 1147 93 0 0 chr3 103159521 103159682 -124364896 - L1P LINE L1 -1056 5090 4930 428 211 126 0 chr3 103159686 103159781 -124364797 + Tigger7 DNA MER2_type 157 263 -287 349 114 291 0 chr3 103159779 103159858 -124364720 + Tigger7 DNA MER2_type 2385 2486 -1 * 2500 150 21 4 chr3 103161692 103162166 -124362412 - L1MA5 LINE L1 0 6300 5819 1765 212 29 24 chr3 103162166 103162832 -124361746 - L1 LINE L1 -3676 3172 2502 * 4378 218 11 2 chr3 103162823 103163773 -124360805 + L1P LINE L1 3388 4345 -1801 4551 155 19 2 chr3 103163775 103164577 -124360001 + L1P LINE L1 4542 5356 -790 44 20 0 0 chr3 103164682 103164733 -124359845 + AT_rich Low_complexity Low_complexity 1 51 0 1608 195 70 28 chr3 103165185 103165585 -124358993 - MSTC LTR MaLR 0 428 12 500 313 66 50 chr3 103166476 103166796 -124357782 + L2 LINE L2 788 1112 -2202 337 288 36 50 chr3 103166800 103166939 -124357639 + L2 LINE L2 1500 1636 -1678 791 319 120 60 chr3 103167076 103167809 -124356769 - L2 LINE L2 -2281 1033 257 224 179 60 0 chr3 103168337 103168421 -124356157 + (TA)n Simple_repeat Simple_repeat 1 89 0 1199 101 6 0 chr3 103169533 103169691 -124354887 - AluSp SINE Alu -154 159 1 358 155 250 12 chr3 103170025 103170109 -124354469 - MLT2B1 LTR ERVL -10 510 407 314 264 123 28 chr3 103170811 103170917 -124353661 - MIR SINE MIR -1 261 146 22 35 0 0 chr3 103171229 103171258 -124353320 + AT_rich Low_complexity Low_complexity 1 29 0 2187 83 3 55 chr3 103171333 103171659 -124352919 + AluSq SINE Alu 5 313 0 1322 185 193 139 chr3 103172072 103172386 -124352192 + L1MC3 LINE L1 6746 7042 -743 259 256 0 24 chr3 103172386 103172468 -124352110 + MLT1A1 LTR MaLR 22 101 -466 1322 185 193 139 chr3 103172468 103172741 -124351837 + L1MC3 LINE L1 7042 7450 -335 1682 163 3 20 chr3 103172953 103173248 -124351330 - AluJo SINE Alu -22 290 1 25 95 0 0 chr3 103173536 103173610 -124350968 + AT_rich Low_complexity Low_complexity 1 74 0 978 152 13 0 chr3 103178040 103178191 -124346387 + MLT1A1 LTR MaLR 166 318 -47 319 307 44 58 chr3 103178264 103178469 -124346109 - L1MC4a LINE L1 -1553 6255 6054 209 283 19 0 chr3 103178554 103178607 -124345971 + L2 LINE L2 2416 2469 -845 1898 125 0 21 chr3 103178901 103179211 -124345367 - AluSx SINE Alu 0 311 8 1578 212 0 10 chr3 103180043 103180331 -124344247 + AluJo SINE Alu 2 286 -26 33 0 0 0 chr3 103180333 103180366 -124344212 + AT_rich Low_complexity Low_complexity 1 33 0 1968 66 0 3 chr3 103180498 103180758 -124343820 + L1PA5 LINE L1 5751 6006 -148 2379 150 36 7 chr3 103181024 103181438 -124343140 + MSTA LTR MaLR 3 428 0 830 187 62 7 chr3 103181746 103181924 -124342654 - LTR40b LTR ERVL 0 462 302 482 339 93 4 chr3 103182478 103182714 -124341864 + MIR SINE MIR 5 261 -1 203 414 81 0 chr3 103182775 103182874 -124341704 + L2 LINE L2 3118 3224 -48 218 222 0 19 chr3 103182915 103182969 -124341609 + GA-rich Low_complexity Low_complexity 4 56 0 181 298 96 11 chr3 103183629 103183723 -124340855 - L3 LINE CR1 -16 1561 1460 231 200 22 0 chr3 103184787 103184832 -124339746 + (CA)n Simple_repeat Simple_repeat 2 47 0 643 83 0 73 chr3 103185413 103185522 -124339056 - AluSg/x SINE Alu -14 296 196 216 97 0 0 chr3 103185558 103185589 -124338989 + (T)n Simple_repeat Simple_repeat 1 31 0 851 222 39 43 chr3 103185891 103186121 -124338457 - MIR SINE MIR -32 230 2 236 197 66 0 chr3 103186338 103186399 -124338179 + MIR SINE MIR 77 141 -121 283 351 42 12 chr3 103186570 103186735 -124337843 + MER5A DNA MER1_type 20 189 0 187 280 154 63 chr3 103186770 103186913 -124337665 + MER5B DNA MER1_type 23 178 0 306 312 0 13 chr3 103188796 103188873 -124335705 - MER5C DNA MER1_type -248 76 1 288 240 73 10 chr3 103188912 103189008 -124335570 + MLT1D LTR MaLR 4 105 -362 4435 49 21 5 chr3 103189123 103189695 -124334883 + L1PA8 LINE L1 5589 6169 -3 466 224 119 37 chr3 103189708 103190009 -124334569 + MLT1D LTR MaLR 114 467 0 26 88 0 0 chr3 103191260 103191328 -124333250 + AT_rich Low_complexity Low_complexity 1 68 0 818 226 193 4 chr3 103191894 103192168 -124332410 - MER34 LTR ERV1 0 542 217 22 0 0 0 chr3 103192345 103192367 -124332211 + AT_rich Low_complexity Low_complexity 1 22 0 2021 152 43 0 chr3 103192898 103193226 -124331352 - MER47A DNA MER2_type 0 366 25 2198 259 35 45 chr3 103193687 103194306 -124330272 + MER21B LTR ERV1 22 634 -229 814 296 27 5 chr3 103194298 103194521 -124330057 + LTR40b LTR ERVL 214 441 -21 * 27 49 0 0 chr3 103195034 103195075 -124329503 + AT_rich Low_complexity Low_complexity 1 41 0 25 51 0 0 chr3 103195238 103195277 -124329301 + AT_rich Low_complexity Low_complexity 1 39 0 1615 84 4 4 chr3 103195527 103195754 -124328824 + L1PA11 LINE L1 5940 6166 -8 307 260 52 10 chr3 103195999 103196095 -124328483 + MIR SINE MIR 113 212 -50 21 36 0 0 chr3 103196137 103196165 -124328413 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr3 103196569 103196604 -124327974 + AT_rich Low_complexity Low_complexity 1 35 0 297 311 22 11 chr3 103196893 103196983 -124327595 + MIR SINE MIR 17 107 -155 42976 30 22 1 chr3 103197022 103203047 -124321531 - L1PA2 LINE L1 0 6155 5 4577 95 0 5 chr3 103203055 103203696 -124320882 + L1PA10 LINE L1 5519 6156 -12 2016 254 60 38 chr3 103203730 103204414 -124320164 - L1M2 LINE L1 -4974 2235 1537 2211 242 19 33 chr3 103204487 103205048 -124319530 - L1M2 LINE L1 -6567 642 88 536 42 14 0 chr3 103205048 103205119 -124319459 + (TTCTC)n Simple_repeat Simple_repeat 4 75 0 304 221 13 0 chr3 103205669 103205759 -124318819 - L1M2 LINE L1 -6746 463 2 512 110 0 0 chr3 103207379 103207461 -124317117 + L1MA2 LINE L1 6223 6304 0 291 227 82 21 chr3 103207682 103207779 -124316799 + MIR SINE MIR 2 104 -158 381 291 203 45 chr3 103207868 103208252 -124316326 + L1MC4a LINE L1 5978 6300 -1508 231 88 0 0 chr3 103208252 103208286 -124316292 + (TG)n Simple_repeat Simple_repeat 1 34 0 381 291 203 45 chr3 103208286 103208478 -124316100 + L1MC4a LINE L1 6300 6645 -1163 21 57 0 0 chr3 103208737 103208772 -124315806 + AT_rich Low_complexity Low_complexity 1 35 0 261 0 0 0 chr3 103208872 103208901 -124315677 + (TG)n Simple_repeat Simple_repeat 2 30 0 3528 107 0 0 chr3 103208960 103209435 -124315143 + L1P LINE L1 2 476 -5670 7181 38 7 5 chr3 103209435 103210385 -124314193 + L1PA4 LINE L1 5222 6173 0 23854 71 11 1 chr3 103210385 103213537 -124311041 - L1PA4 LINE L1 -2945 3201 18 17398 41 5 0 chr3 103213537 103216489 -124308089 + L1PA4 LINE L1 3194 6151 -4 1340 194 74 31 chr3 103218010 103218360 -124306218 - MLT1A1 LTR MaLR 0 365 1 23 0 0 0 chr3 103219975 103219998 -124304580 + AT_rich Low_complexity Low_complexity 1 23 0 309 109 0 0 chr3 103221047 103221102 -124303476 + (TA)n Simple_repeat Simple_repeat 2 56 0 1853 146 14 10 chr3 103221102 103221397 -124303181 - AluSx SINE Alu -16 296 1 23 0 0 0 chr3 103223672 103223695 -124300883 + AT_rich Low_complexity Low_complexity 1 23 0 2066 179 60 81 chr3 103224345 103224866 -124299712 + MER67D LTR ERV1 1 510 -4 188 119 0 24 chr3 103225969 103226011 -124298567 + (TA)n Simple_repeat Simple_repeat 2 42 0 420 327 65 13 chr3 103226967 103227276 -124297302 + L1MEc LINE L1 1432 1756 -4640 2390 133 5 8 chr3 103227611 103227978 -124296600 - THE1C LTR MaLR -8 367 2 9129 133 48 42 chr3 103227981 103229547 -124295031 - THE1C-int LTR MaLR -5 1575 1 2218 156 3 26 chr3 103229547 103229931 -124294647 - THE1C LTR MaLR 0 375 1 275 269 116 25 chr3 103230240 103230646 -124293932 + L1M4 LINE L1 4945 5387 -759 2104 179 11 0 chr3 103230664 103231022 -124293556 + MER75 DNA T2_type 6 367 -147 26 0 0 0 chr3 103231103 103231129 -124293449 + AT_rich Low_complexity Low_complexity 1 26 0 441 228 30 0 chr3 103231156 103231257 -124293321 + MER7A DNA MER2_type 1 102 -244 8868 235 39 22 chr3 103232503 103234417 -124290161 + L1PA15 LINE L1 1534 3413 -3384 1521 176 104 21 chr3 103234417 103234753 -124289825 - THE1B LTR MaLR 0 364 1 11152 112 9 1 chr3 103234753 103236320 -124288258 - THE1B-int LTR MaLR 0 1580 1 1760 167 69 20 chr3 103236320 103236667 -124287911 - THE1B LTR MaLR 0 364 1 8868 235 39 22 chr3 103236667 103237811 -124286767 + L1PA15 LINE L1 3412 4661 -2136 7544 207 121 11 chr3 103237822 103239404 -124285174 - MER52A LTR ERV1 0 1755 1 3925 219 103 12 chr3 103239406 103241111 -124283467 + L1PA15 LINE L1 4661 6531 -285 1235 197 23 8 chr3 103241211 103241470 -124283108 + L1PA15 LINE L1 6549 6811 -5 427 282 23 23 chr3 103241475 103241606 -124282972 + MIR SINE MIR 65 195 -67 28 0 0 0 chr3 103241654 103241682 -124282896 + AT_rich Low_complexity Low_complexity 1 28 0 4407 180 32 20 chr3 103241981 103242960 -124281618 + L1 LINE L1 4190 5179 -967 25 51 0 0 chr3 103243077 103243116 -124281462 + AT_rich Low_complexity Low_complexity 1 39 0 1741 160 0 4 chr3 103244235 103244503 -124280075 - AluSx SINE Alu -15 297 31 195 378 101 40 chr3 103244568 103244864 -124279714 - L2 LINE L2 -580 2734 2421 446 266 56 36 chr3 103245594 103245846 -124278732 - MIR SINE MIR -3 259 3 2224 111 3 0 chr3 103246842 103247149 -124277429 + AluSq SINE Alu 1 308 -5 322 140 0 0 chr3 103249556 103249606 -124274972 + L1PB4 LINE L1 6041 6090 -66 293 224 0 0 chr3 103250474 103250532 -124274046 + LTR40b LTR ERVL 3 60 -459 1224 284 37 89 chr3 103250553 103251127 -124273451 + MLT1E LTR MaLR 50 593 0 654 246 86 9 chr3 103251127 103251428 -124273150 + LTR40b LTR ERVL 57 462 0 182 324 15 59 chr3 103251435 103251503 -124273075 + L2 LINE L2 3188 3252 -20 41488 60 3 4 chr3 103251617 103257777 -124266801 + L1PA4 LINE L1 2 6155 0 307 335 67 51 chr3 103257902 103258233 -124266345 + L1MEd LINE L1 813 1148 -4971 784 334 65 14 chr3 103258427 103258795 -124265783 - MLT2E LTR ERVL -3 625 239 635 211 75 0 chr3 103259233 103259380 -124265198 - MER3 DNA MER1_type -41 168 11 746 219 22 39 chr3 103259710 103259888 -124264690 - FAM SINE Alu 0 175 1 22 0 0 0 chr3 103260019 103260041 -124264537 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr3 103260395 103260427 -124264151 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr3 103260578 103260603 -124263975 + AT_rich Low_complexity Low_complexity 1 25 0 1832 230 47 4 chr3 103260963 103261471 -124263107 - MER65-int LTR ERV1 -2378 2493 1964 1537 148 13 13 chr3 103261474 103261791 -124262787 - AluYb8 SINE Alu -1 317 1 277 354 155 6 chr3 103261947 103262128 -124262450 - MIR SINE MIR -5 257 50 566 51 25 0 chr3 103262412 103262491 -124262087 + L1PA4 LINE L1 6074 6154 -1 223 289 78 22 chr3 103262746 103262836 -124261742 - MIR3 SINE MIR -4 204 110 2010 145 40 14 chr3 103262849 103263201 -124261377 + THE1C LTR MaLR 15 375 0 21 0 0 0 chr3 103263481 103263502 -124261076 + AT_rich Low_complexity Low_complexity 1 21 0 2195 117 7 0 chr3 103263720 103264020 -124260558 - AluSc SINE Alu -5 304 3 291 114 0 0 chr3 103264183 103264227 -124260351 + (CA)n Simple_repeat Simple_repeat 1 44 0 299 218 0 0 chr3 103265297 103265352 -124259226 - MIR SINE MIR -10 252 198 2525 47 3 25 chr3 103265353 103265671 -124258907 - AluY SINE Alu 0 311 1 2221 232 142 11 chr3 103266889 103268004 -124256574 + L1ME1 LINE L1 4903 6161 -5 221 246 16 16 chr3 103269052 103269113 -124255465 + CT-rich Low_complexity Low_complexity 1 61 0 29 28 0 0 chr3 103269639 103269675 -124254903 + AT_rich Low_complexity Low_complexity 1 36 0 31 26 0 0 chr3 103269918 103269956 -124254622 + AT_rich Low_complexity Low_complexity 1 38 0 300 343 155 6 chr3 103270324 103270505 -124254073 + MIR SINE MIR 50 257 -5 810 264 129 52 chr3 103270515 103271058 -124253520 - L2 LINE L2 -9 3304 2706 2406 153 31 24 chr3 103272185 103272609 -124251969 - Tigger2a DNA MER2_type 0 434 8 2334 101 0 3 chr3 103272946 103273253 -124251325 - AluSx SINE Alu -6 306 1 660 183 21 21 chr3 103274512 103274654 -124249924 + FLAM_C SINE Alu 1 142 -1 311 368 63 17 chr3 103274867 103275106 -124249472 - LTR33 LTR ERVL -37 484 235 3080 199 72 124 chr3 103275119 103275412 -124249166 - L1M4 LINE L1 -5045 1497 1190 579 71 12 0 chr3 103275412 103275496 -124249082 - L1PA7 LINE L1 -4 6150 6066 3080 199 72 124 chr3 103275496 103276166 -124248412 - L1M4 LINE L1 -5352 1190 689 207 0 0 0 chr3 103276166 103276189 -124248389 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3080 199 72 124 chr3 103276189 103276831 -124247747 - L1M4 LINE L1 -5853 689 15 21 36 0 0 chr3 103276907 103276935 -124247643 + AT_rich Low_complexity Low_complexity 1 28 0 573 268 154 88 chr3 103276938 103277322 -124247256 + LTR33 LTR ERVL 1 409 -112 760 178 130 12 chr3 103277333 103277502 -124247076 - MER34 LTR ERV1 -1 541 353 279 224 53 0 chr3 103277502 103277578 -124247000 + L1MC4 LINE L1 6624 6703 -1339 1016 208 120 39 chr3 103277581 103277889 -124246689 - MER34 LTR ERV1 -183 359 27 1847 205 106 19 chr3 103278150 103278613 -124245965 - MLT1D LTR MaLR -2 503 1 248 301 63 59 chr3 103278615 103278753 -124245825 - L1 LINE L1 -1187 4959 4818 709 207 54 68 chr3 103278753 103278975 -124245603 + MER20 DNA MER1_type 1 219 0 248 301 63 59 chr3 103278975 103279075 -124245503 - L1 LINE L1 -1328 4818 4720 471 304 77 50 chr3 103279783 103280223 -124244355 - L1 LINE L1 -1618 4528 4077 214 303 92 34 chr3 103280850 103280969 -124243609 + MIR SINE MIR 94 219 -43 347 148 0 0 chr3 103280970 103281024 -124243554 - MLT2B1 LTR ERVL 0 520 467 214 48 0 48 chr3 103281030 103281072 -124243506 + (TA)n Simple_repeat Simple_repeat 2 41 0 2149 210 83 0 chr3 103281109 103281556 -124243022 - MLT2B1 LTR ERVL -36 484 1 556 254 152 9 chr3 103281767 103281991 -124242587 + MIR SINE MIR 1 256 -6 248 313 131 0 chr3 103282039 103282138 -124242440 + MIR SINE MIR 29 140 -122 40435 72 3 3 chr3 103282159 103288309 -124236269 + L1PA5 LINE L1 4 6153 -1 483 18 0 0 chr3 103289659 103289715 -124234863 + (TA)n Simple_repeat Simple_repeat 2 57 0 747 140 72 121 chr3 103289836 103290043 -124234535 + MLT2C2 LTR ERVL 1 197 -267 2063 237 74 70 chr3 103290044 103290871 -124233707 - L1MC4 LINE L1 -728 7314 6485 288 0 0 0 chr3 103290876 103290908 -124233670 + (CA)n Simple_repeat Simple_repeat 1 32 0 988 98 23 29 chr3 103291186 103291360 -124233218 + L1MA4 LINE L1 6124 6296 -4 1837 198 45 21 chr3 103291512 103291948 -124232630 + L1MA7 LINE L1 5833 6281 -10 226 149 11 81 chr3 103292357 103292444 -124232134 + A-rich Low_complexity Low_complexity 2 82 0 541 351 18 6 chr3 103294144 103294315 -124230263 + MIR3 SINE MIR 15 187 -21 5709 57 8 0 chr3 103294317 103295049 -124229529 - L1PA6 LINE L1 -1383 4763 4026 6825 61 11 1 chr3 103295049 103296434 -124228144 + L1PA6 LINE L1 4742 6153 -1 239 328 67 37 chr3 103300551 103300685 -124223893 + L2 LINE L2 3134 3271 -1 478 274 37 0 chr3 103300929 103301064 -124223514 - MLT1A1 LTR MaLR -46 319 180 26 0 0 0 chr3 103301399 103301425 -124223153 + AT_rich Low_complexity Low_complexity 1 26 0 184 365 24 35 chr3 103301596 103301681 -124222897 - L2 LINE L2 0 3272 3189 187 314 57 32 chr3 103302356 103302480 -124222098 - L2 LINE L2 -16 3297 3171 186 143 0 0 chr3 103303715 103303750 -124220828 + (TG)n Simple_repeat Simple_repeat 2 36 0 2181 104 3 0 chr3 103304589 103304887 -124219691 + AluSg SINE Alu 1 299 -11 2125 134 3 0 chr3 103305004 103305310 -124219268 + AluSx SINE Alu 1 307 -5 25 0 0 0 chr3 103305785 103305810 -124218768 + AT_rich Low_complexity Low_complexity 1 25 0 209 303 0 30 chr3 103305812 103305878 -124218700 - MIR3 SINE MIR -50 158 95 604 198 45 0 chr3 103305995 103306152 -124218426 + Charlie5 DNA MER1_type 2422 2585 -27 180 0 0 0 chr3 103306342 103306362 -124218216 + (TG)n Simple_repeat Simple_repeat 1 20 0 209 192 39 0 chr3 103306427 103306479 -124218099 + (TTTA)n Simple_repeat Simple_repeat 2 55 0 1995 92 11 21 chr3 103306567 103306930 -124217648 - LTR7 LTR ERV1 -2 448 1 2219 123 43 45 chr3 103306930 103307544 -124217034 - HERVH LTR ERV1 0 7713 5588 * 4169 149 1 9 chr3 103307527 103308191 -124216387 - HERVH LTR ERV1 -2567 5146 4488 3340 125 0 6 chr3 103308193 103308698 -124215880 - HERVH LTR ERV1 -3720 3993 3492 841 150 27 0 chr3 103308688 103308835 -124215743 - HERVH LTR ERV1 -4423 3290 3140 * 7065 111 1 7 chr3 103308829 103309876 -124214702 - HERVH LTR ERV1 -4726 2987 1947 2758 65 93 19 chr3 103309895 103310312 -124214266 - LTR7 LTR ERV1 -2 448 1 195 184 0 0 chr3 103310486 103310524 -124214054 + (CA)n Simple_repeat Simple_repeat 2 39 0 532 283 87 25 chr3 103311077 103311517 -124213061 + LTR33 LTR ERVL 1 513 -8 184 219 0 0 chr3 103312646 103312687 -124211891 + L2 LINE L2 3273 3313 0 507 276 124 43 chr3 103313269 103314440 -124210138 - L1ME LINE L1 -634 5530 4258 268 268 75 48 chr3 103314808 103315036 -124209542 - HAL1 LINE L1 -990 1517 1284 43 0 0 0 chr3 103315323 103315366 -124209212 + AT_rich Low_complexity Low_complexity 1 43 0 408 143 0 0 chr3 103316100 103316170 -124208408 + (TTCC)n Simple_repeat Simple_repeat 1 70 0 228 207 24 12 chr3 103316202 103316284 -124208294 + CT-rich Low_complexity Low_complexity 2 84 0 1210 234 63 55 chr3 103318013 103318470 -124206108 + L1ME3 LINE L1 5632 6092 -70 188 333 42 0 chr3 103318650 103318722 -124205856 - MIR SINE MIR -74 188 114 274 201 0 22 chr3 103318722 103318976 -124205602 + AluJo SINE Alu 1 300 -2 342 351 8 22 chr3 103319633 103319767 -124204811 - MIR SINE MIR -111 151 20 1878 190 16 32 chr3 103320525 103320957 -124203621 + L1MC2 LINE L1 5446 5870 -474 709 144 0 8 chr3 103321117 103321235 -124203343 - Tigger3b DNA MER2_type -72 1159 1043 29 28 0 0 chr3 103321263 103321299 -124203279 + AT_rich Low_complexity Low_complexity 1 36 0 21538 58 4 1 chr3 103321299 103324856 -124199722 - L1PA5 LINE L1 -8 6146 2578 12064 70 6 1 chr3 103324860 103326735 -124197843 + L1PA5 LINE L1 705 2589 -3557 4259 137 46 16 chr3 103326735 103327539 -124197039 - Tigger3b DNA MER2_type -272 959 132 1653 143 47 4 chr3 103327541 103327799 -124196779 - THE1B LTR MaLR -43 321 53 518 202 35 0 chr3 103327799 103327913 -124196665 - L1MEc LINE L1 -3403 2812 2695 580 236 53 18 chr3 103327925 103328150 -124196428 - L1MEc LINE L1 -4179 2217 1985 2625 263 77 20 chr3 103328164 103329263 -124195315 - L1MEc LINE L1 -994 1582 371 444 254 137 29 chr3 103329282 103329487 -124195091 - L2 LINE L2 -1829 1485 1259 2226 303 93 36 chr3 103329492 103330509 -124194069 - L2 LINE L2 -2232 1082 8 1550 210 90 8 chr3 103330609 103330975 -124193603 - MSTD LTR MaLR 0 396 1 182 308 0 0 chr3 103331598 103331650 -124192928 - MIR SINE MIR -108 154 103 332 236 0 9 chr3 103331924 103332030 -124192548 + CT-rich Low_complexity Low_complexity 1 105 0 22 0 0 0 chr3 103332099 103332121 -124192457 + AT_rich Low_complexity Low_complexity 1 22 0 23 92 0 0 chr3 103332441 103332506 -124192072 + AT_rich Low_complexity Low_complexity 1 65 0 22 0 0 0 chr3 103332771 103332793 -124191785 + AT_rich Low_complexity Low_complexity 1 22 0 320 27 0 0 chr3 103332935 103332972 -124191606 - tRNA-Thr-ACA tRNA tRNA -39 37 1 22 0 0 0 chr3 103333273 103333295 -124191283 + AT_rich Low_complexity Low_complexity 1 22 0 1840 153 7 3 chr3 103334885 103335173 -124189405 + AluJb SINE Alu 1 289 -23 1962 170 33 0 chr3 103335340 103335676 -124188902 - MER7A DNA MER2_type -1 345 1 355 190 0 0 chr3 103336844 103336902 -124187676 + MER74C LTR ERVL 403 460 0 295 310 98 81 chr3 103336910 103337084 -124187494 - LTR16B LTR ERVL -251 213 37 216 186 23 0 chr3 103338085 103338128 -124186450 + CT-rich Low_complexity Low_complexity 2 45 0 180 355 113 7 chr3 103338166 103338307 -124186271 - MIR SINE MIR -50 212 57 1791 246 99 63 chr3 103339158 103339955 -124184623 - LTR1B LTR ERV1 0 826 1 1212 103 0 0 chr3 103340347 103340502 -124184076 + AluSq SINE Alu 1 155 -158 392 182 0 15 chr3 103340521 103340587 -124183991 - LOR1a LTR ERV1 -95 402 338 902 179 0 0 chr3 103340587 103340727 -124183851 + AluSq SINE Alu 152 291 -22 207 86 0 29 chr3 103341317 103341352 -124183226 + (TG)n Simple_repeat Simple_repeat 1 34 0 1145 134 6 0 chr3 103341377 103341541 -124183037 - LOR1a LTR ERV1 0 497 333 896 168 0 7 chr3 103341541 103341684 -124182894 - LOR1-int LTR ERV1 -416 7704 7563 1123 175 23 5 chr3 103341684 103341935 -124182643 - LOR1b LTR ERV1 -170 291 1 3788 131 7 15 chr3 103341938 103342818 -124181760 - LOR1b-int LTR ERV1 -3 8117 7168 298 197 16 0 chr3 103342818 103342879 -124181699 - MER49 LTR ERV1 -852 71 10 1242 165 14 0 chr3 103342879 103343091 -124181487 - LOR1b-int LTR ERV1 -1077 7043 6829 15784 124 65 27 chr3 103343270 103343715 -124180863 - LOR1b-int LTR ERV1 -4070 4050 3623 273 57 0 0 chr3 103343715 103343750 -124180828 + (TTA)n Simple_repeat Simple_repeat 1 35 0 1572 199 0 0 chr3 103343754 103344031 -124180547 - AluJb SINE Alu -31 281 5 15784 124 65 27 chr3 103344031 103345021 -124179557 - LOR1b-int LTR ERV1 -4499 3621 2670 450 53 0 0 chr3 103345021 103345078 -124179500 + (TA)n Simple_repeat Simple_repeat 2 58 0 15784 124 65 27 chr3 103345078 103347502 -124177076 - LOR1b-int LTR ERV1 -5450 2670 1 2520 174 18 0 chr3 103347502 103347955 -124176623 - LOR1b LTR ERV1 0 461 1 182 152 0 43 chr3 103349270 103349316 -124175262 + A-rich Low_complexity Low_complexity 5 48 0 24 0 0 0 chr3 103349738 103349762 -124174816 + AT_rich Low_complexity Low_complexity 1 24 0 2192 109 0 13 chr3 103350108 103350411 -124174167 + AluY SINE Alu 1 299 -12 354 281 98 13 chr3 103351269 103351447 -124173131 - MIR SINE MIR -51 157 17 2894 198 30 19 chr3 103352207 103352834 -124171744 + LTR27 LTR ERV1 3 636 0 21 57 0 0 chr3 103354173 103354208 -124170370 + AT_rich Low_complexity Low_complexity 1 35 0 424 342 19 7 chr3 103354458 103354613 -124169965 - MIR SINE MIR -6 256 100 330 262 65 19 chr3 103355608 103355715 -124168863 + L1MC4 LINE L1 6592 6703 -1339 320 316 0 26 chr3 103355637 103355751 -124168827 - L1MC4 LINE L1 -1339 6703 6593 * 1175 234 109 13 chr3 103355783 103356313 -124168265 + L1 LINE L1 2798 3378 -2768 783 287 73 3 chr3 103356374 103356757 -124167821 + L1 LINE L1 3497 3906 -2240 2194 162 22 50 chr3 103356989 103357447 -124167131 + MER65A LTR ERV1 1 445 0 400 243 45 40 chr3 103357500 103357677 -124166901 + MER65A-int LTR ERV1 55 232 -4639 272 310 6 63 chr3 103357678 103357836 -124166742 - MER52A LTR ERV1 0 1755 1607 784 218 78 111 chr3 103357842 103358338 -124166240 - MER52A LTR ERV1 -141 495 297 300 235 29 0 chr3 103358305 103358373 -124166205 - LTR1 LTR ERV1 -595 190 121 * 796 240 6 11 chr3 103358401 103358580 -124165998 - LTR28 LTR ERV1 -842 178 1 4549 200 77 66 chr3 103358711 103359847 -124164731 + MER65A-int LTR ERV1 392 1551 -3320 1653 209 7 0 chr3 103359847 103360153 -124164425 - AluJb SINE Alu 0 312 5 4549 200 77 66 chr3 103360153 103360584 -124163994 + MER65A-int LTR ERV1 1551 1976 -2895 1075 0 0 0 chr3 103360584 103360699 -124163879 + AluYb8 SINE Alu 1 115 -203 367 322 36 20 chr3 103360980 103361188 -124163390 - LTR16A1 LTR ERVL -187 263 55 555 297 39 27 chr3 103361513 103361769 -124162809 + HERV16 LTR ERVL 95 353 -4643 1918 151 3 25 chr3 103361879 103362197 -124162381 + AluSq SINE Alu 1 311 -2 1560 238 98 45 chr3 103362313 103362851 -124161727 + MLT1F1 LTR MaLR 1 567 0 687 318 53 15 chr3 103363139 103363476 -124161102 + LTR33 LTR ERVL 164 513 -8 1154 263 55 55 chr3 103363696 103364095 -124160483 - LTR16C LTR ERVL 0 491 93 185 333 20 10 chr3 103364188 103364287 -124160291 + L2 LINE L2 2462 2561 -753 1478 259 83 57 chr3 103364291 103364866 -124159712 - MLT1E LTR MaLR 0 593 4 374 366 84 39 chr3 103364879 103365261 -124159317 + L2 LINE L2 2579 2977 -337 211 237 237 21 chr3 103365423 103365520 -124159058 + L2 LINE L2 3155 3272 0 185 302 0 0 chr3 103366893 103366946 -124157632 - MIR SINE MIR -10 252 200 1871 171 47 117 chr3 103367024 103367596 -124156982 - L1MD2 LINE L1 -21 6338 5807 1918 277 52 12 chr3 103367609 103368458 -124156120 - L1M4 LINE L1 -2751 3395 2513 2202 109 3 0 chr3 103368492 103368794 -124155784 - AluSp SINE Alu -10 303 1 2505 123 11 8 chr3 103369461 103369835 -124154743 - THE1C LTR MaLR 0 375 1 842 236 28 5 chr3 103369841 103370053 -124154525 + U3 snRNA snRNA 1 217 0 27 29 0 0 chr3 103370053 103370087 -124154491 + AT_rich Low_complexity Low_complexity 1 34 0 2220 238 34 23 chr3 103370491 103371051 -124153527 + MLT1F1 LTR MaLR 2 567 0 2044 128 3 10 chr3 103374497 103374809 -124149769 + AluSg SINE Alu 1 310 0 2207 156 32 3 chr3 103376606 103376984 -124147594 + MLT1B LTR MaLR 1 389 -1 21 0 0 0 chr3 103380211 103380232 -124144346 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr3 103380563 103380603 -124143975 + AT_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr3 103381348 103381373 -124143205 + AT_rich Low_complexity Low_complexity 1 25 0 693 293 109 60 chr3 103382319 103382824 -124141754 - L2 LINE L2 -1 3312 2786 1478 311 77 28 chr3 103382833 103383281 -124141297 - L2 LINE L2 -683 2631 2140 381 102 0 0 chr3 103383281 103383340 -124141238 + (CA)n Simple_repeat Simple_repeat 2 60 0 1478 311 77 28 chr3 103383340 103383543 -124141035 - L2 LINE L2 -1174 2140 1948 22 35 0 0 chr3 103384473 103384502 -124140076 + AT_rich Low_complexity Low_complexity 1 29 0 206 295 71 9 chr3 103384556 103384668 -124139910 - MIR SINE MIR -12 250 132 30 0 0 0 chr3 103384952 103384982 -124139596 + AT_rich Low_complexity Low_complexity 1 30 0 2062 174 19 22 chr3 103384993 103385406 -124139172 - MLT2D LTR ERVL 0 414 3 311 161 0 0 chr3 103385407 103385463 -124139115 - Ricksha DNA DNA -2899 347 292 15423 230 41 17 chr3 103385464 103388528 -124136050 - ERVL-D LTR ERVL -1684 4080 832 1799 199 11 6 chr3 103388528 103388889 -124135689 - MLT1A1 LTR MaLR 0 365 3 15423 230 41 17 chr3 103388889 103389742 -124134836 - ERVL-D LTR ERVL -4932 832 1 1553 190 51 3 chr3 103389783 103390078 -124134500 - MLT2D LTR ERVL -101 313 5 271 291 71 14 chr3 103390386 103390527 -124134051 + MLT1J LTR MaLR 305 453 -58 2763 13 0 0 chr3 103390602 103390904 -124133674 - AluYa5 SINE Alu -9 302 1 200 326 45 40 chr3 103391153 103391270 -124133308 - MIR SINE MIR -93 115 3 42 65 0 0 chr3 103391385 103391462 -124133116 + AT_rich Low_complexity Low_complexity 1 77 0 538 301 28 34 chr3 103392181 103392357 -124132221 + L2 LINE L2 2677 2851 -463 361 214 291 44 chr3 103392470 103392652 -124131926 - MLT1H LTR MaLR -203 346 120 329 341 88 79 chr3 103392751 103393208 -124131370 + L2 LINE L2 2852 3312 -1 35 41 0 0 chr3 103393305 103393354 -124131224 + AT_rich Low_complexity Low_complexity 1 49 0 363 388 7 7 chr3 103393455 103393607 -124130971 - MIR3 SINE MIR -41 167 16 2388 72 23 0 chr3 103394921 103395225 -124129353 + AluSp SINE Alu 1 311 -2 21 36 0 0 chr3 103395536 103395564 -124129014 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr3 103396671 103396700 -124127878 + AT_rich Low_complexity Low_complexity 1 29 0 539 335 73 16 chr3 103396911 103397159 -124127419 - MIR SINE MIR 0 262 1 217 341 67 39 chr3 103399317 103399525 -124125053 + L2 LINE L2 2574 2787 -527 952 286 45 24 chr3 103400174 103400461 -124124117 + LTR40a LTR ERVL 1 293 -226 1599 288 37 49 chr3 103400691 103401364 -124123214 + HERVL68 LTR ERVL 935 1599 -3931 3981 284 63 27 chr3 103401370 103403022 -124121556 + HERVL68 LTR ERVL 2050 3789 -1741 1696 245 77 60 chr3 103403074 103403593 -124120985 - MER77 LTR ERV1 -22 583 56 2510 276 45 28 chr3 103403593 103404391 -124120187 + HERVL68 LTR ERVL 3815 4626 -904 285 309 23 63 chr3 103404663 103404838 -124119740 + HERVL68 LTR ERVL 2509 2676 -361 333 179 45 0 chr3 103405091 103405158 -124119420 + HERVL68 LTR ERVL 2796 2865 -172 727 239 103 0 chr3 103405183 103405367 -124119211 + HERVL68 LTR ERVL 5323 5525 -5 1415 256 87 32 chr3 103405371 103405863 -124118715 + LTR40a LTR ERVL 1 519 0 529 207 23 17 chr3 103407406 103407580 -124116998 + GA-rich Low_complexity Low_complexity 4 178 0 315 0 0 0 chr3 103408605 103408640 -124115938 + (T)n Simple_repeat Simple_repeat 1 35 0 521 304 187 9 chr3 103408750 103408964 -124115614 + MIR SINE MIR 3 254 -8 216 67 0 0 chr3 103408965 103408995 -124115583 + (CAT)n Simple_repeat Simple_repeat 1 30 0 315 49 0 0 chr3 103409583 103409624 -124114954 + (CA)n Simple_repeat Simple_repeat 2 42 0 444 338 53 4 chr3 103411416 103411644 -124112934 + HAL1b LINE L1 303 541 -807 1972 90 34 8 chr3 103411653 103412003 -124112575 + LTR7 LTR ERV1 1 448 -2 5138 116 90 16 chr3 103412005 103413123 -124111455 - HERVH LTR ERV1 -6219 1494 229 41178 66 3 1 chr3 103413225 103419311 -124105267 - L1PA4 LINE L1 -57 6098 1 722 307 53 12 chr3 103420185 103420713 -124103865 + L1M4c LINE L1 1041 1753 -4810 28 0 0 0 chr3 103420849 103420877 -124103701 + AT_rich Low_complexity Low_complexity 1 28 0 6040 155 11 26 chr3 103420877 103421071 -124103507 - L1MA3 LINE L1 -10 7714 7519 1798 154 0 7 chr3 103421071 103421356 -124103222 + AluSx SINE Alu 23 305 -7 6040 155 11 26 chr3 103421356 103422837 -124101741 - L1MA3 LINE L1 -205 7519 6064 797 157 0 0 chr3 103422884 103423024 -124101554 - L1MA3 LINE L1 -1490 6075 5936 1897 175 91 5 chr3 103423024 103423418 -124101160 - MSTA LTR MaLR 0 428 1 2911 159 18 67 chr3 103423423 103424021 -124100557 - MSTA-int LTR MaLR -6 1574 1006 * 3029 178 4 0 chr3 103424020 103424543 -124100035 - MSTA-int LTR MaLR -1113 538 14 1327 168 100 33 chr3 103424543 103424663 -124099915 - MSTA LTR MaLR 0 428 318 1989 158 17 6 chr3 103424663 103425012 -124099566 - THE1A LTR MaLR 0 355 3 11403 101 8 4 chr3 103425014 103426589 -124097989 - THE1A-int LTR MaLR 0 1580 1 1969 163 23 6 chr3 103426589 103426938 -124097640 - THE1A LTR MaLR 0 355 1 1327 168 100 33 chr3 103426938 103427212 -124097366 - MSTA LTR MaLR -109 319 1 8223 170 51 52 chr3 103427212 103430241 -124094337 - L1MA3 LINE L1 -1625 5940 2911 2926 3 0 0 chr3 103430241 103430555 -124094023 - AluYb8 SINE Alu -4 314 1 8223 170 51 52 chr3 103430555 103430625 -124093953 - L1MA3 LINE L1 -4654 2911 2842 207 0 0 0 chr3 103430625 103430648 -124093930 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 8223 170 51 52 chr3 103430648 103431235 -124093343 - L1MA3 LINE L1 -4723 2842 2262 779 144 72 30 chr3 103431236 103431466 -124093112 + L1M1 LINE L1 3525 3763 -3802 * 3059 173 22 62 chr3 103431465 103432095 -124092483 - L1MA3 LINE L1 -5297 2268 1664 297 0 0 0 chr3 103432161 103432194 -124092384 + (TG)n Simple_repeat Simple_repeat 2 34 0 403 141 0 0 chr3 103432210 103432274 -124092304 - MLT2A1 LTR ERVL -42 402 339 895 117 39 0 chr3 103432274 103432428 -124092150 + L1M1 LINE L1 2450 2609 -4956 1838 117 25 7 chr3 103432431 103432712 -124091866 - MLT2A1 LTR ERVL -113 331 46 728 172 33 20 chr3 103432704 103432855 -124091723 + LTR40b LTR ERVL 310 462 0 * 922 289 40 20 chr3 103432871 103433372 -124091206 + L1M1 LINE L1 4098 4608 -2957 183 156 0 0 chr3 103433892 103433924 -124090654 + (ATGGTG)n Simple_repeat Simple_repeat 4 35 0 207 156 0 0 chr3 103434249 103434281 -124090297 + (TG)n Simple_repeat Simple_repeat 1 32 0 282 275 121 54 chr3 103435388 103435537 -124089041 + L3 LINE CR1 1414 1572 -5 22 35 0 0 chr3 103437485 103437514 -124087064 + AT_rich Low_complexity Low_complexity 1 29 0 51 0 0 0 chr3 103438256 103438307 -124086271 + AT_rich Low_complexity Low_complexity 1 51 0 23 0 0 0 chr3 103438356 103438379 -124086199 + AT_rich Low_complexity Low_complexity 1 23 0 349 200 0 0 chr3 103438414 103438484 -124086094 + MER116 DNA Mariner 11 80 0 2027 143 36 38 chr3 103440407 103440772 -124083806 - THE1B LTR MaLR 0 364 1 228 261 204 64 chr3 103441359 103441516 -124083062 - MIR SINE MIR -13 249 71 259 295 16 25 chr3 103442417 103442539 -124082039 + Charlie8 DNA MER1_type 33 153 -2264 210 37 0 0 chr3 103442645 103442672 -124081906 + (TTAA)n Simple_repeat Simple_repeat 1 27 0 1994 132 7 0 chr3 103442672 103442961 -124081617 - AluSq SINE Alu -22 291 1 2370 110 3 6 chr3 103442983 103443329 -124081249 - L1PA16 LINE L1 -9 6157 5813 2749 19 0 3 chr3 103446293 103446600 -124077978 - AluY SINE Alu -5 306 1 2359 114 19 29 chr3 103446731 103447109 -124077469 + THE1C LTR MaLR 1 374 -1 243 281 0 0 chr3 103447435 103447492 -124077086 + CT-rich Low_complexity Low_complexity 5 61 0 480 196 0 31 chr3 103448647 103448744 -124075834 + AluJo SINE Alu 122 215 -97 249 33 0 0 chr3 103448745 103448775 -124075803 + (TG)n Simple_repeat Simple_repeat 2 31 0 185 111 56 0 chr3 103449077 103449113 -124075465 + (CATATA)n Simple_repeat Simple_repeat 3 40 0 1484 317 102 53 chr3 103449270 103449545 -124075033 - L2 LINE L2 -630 2684 2424 3328 186 22 28 chr3 103449545 103450228 -124074350 - LTR58 LTR ERV1 0 679 1 1484 317 102 53 chr3 103450228 103450972 -124073606 - L2 LINE L2 -890 2424 1615 333 286 89 49 chr3 103450994 103451197 -124073381 - L2 LINE L2 -1848 1466 1256 23 33 0 0 chr3 103451302 103451332 -124073246 + AT_rich Low_complexity Low_complexity 1 30 0 42128 38 23 1 chr3 103451425 103457448 -124067130 - L1PA2 LINE L1 0 6155 2 408 338 39 34 chr3 103458316 103458520 -124066058 - MIR3 SINE MIR -1 207 3 386 293 27 48 chr3 103458538 103458685 -124065893 - MIR3 SINE MIR -7 201 58 810 208 6 12 chr3 103460803 103460971 -124063607 - AluJb SINE Alu -6 306 140 569 236 159 5 chr3 103461088 103461283 -124063295 + MLT1H LTR MaLR 14 238 -311 191 229 0 129 chr3 103461363 103461433 -124063145 - L2 LINE L2 -372 2942 2882 1340 194 62 26 chr3 103461750 103461886 -124062692 + AluJo SINE Alu 1 131 -181 339 25 0 0 chr3 103461886 103461926 -124062652 + (CAAAA)n Simple_repeat Simple_repeat 3 42 0 1340 194 62 26 chr3 103461926 103462062 -124062516 + AluJo SINE Alu 131 283 -29 202 275 62 62 chr3 103462203 103462283 -124062295 + L2 LINE L2 3168 3247 -25 189 0 53 53 chr3 103462412 103462450 -124062128 + (TTTTA)n Simple_repeat Simple_repeat 5 42 0 198 71 0 0 chr3 103463145 103463173 -124061405 + (TG)n Simple_repeat Simple_repeat 1 28 0 328 294 112 29 chr3 103464322 103464492 -124060086 + LTR33A LTR ERVL 100 283 -240 804 199 37 6 chr3 103465028 103465189 -124059389 + AluJb SINE Alu 1 166 -146 6124 213 37 33 chr3 103465190 103465309 -124059269 - L1PBa LINE L1 -4768 2095 1978 2344 74 0 0 chr3 103465309 103465606 -124058972 + AluY SINE Alu 3 299 -12 6124 213 37 33 chr3 103465606 103466241 -124058337 - L1PBa LINE L1 -4885 1978 1347 225 0 0 0 chr3 103466241 103466266 -124058312 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 6124 213 37 33 chr3 103466266 103468542 -124056036 - L1PBa LINE L1 -5516 1347 3 41913 40 24 2 chr3 103470167 103472735 -124051843 + L1PA3 LINE L1 3 2513 -3662 180 0 0 0 chr3 103472735 103472755 -124051823 + (CACAC)n Simple_repeat Simple_repeat 3 22 0 41913 40 24 2 chr3 103472755 103476223 -124048355 + L1PA3 LINE L1 2513 6175 0 1775 142 10 29 chr3 106476284 106476595 -121047983 + L1P LINE L1 978 1282 -4864 410 185 25 12 chr3 106477864 106477945 -121046633 - AluSg/x SINE Alu -4 296 215 293 312 170 0 chr3 106477946 106478087 -121046491 - MIR SINE MIR -73 189 25 2091 112 0 11 chr3 106478299 106478616 -121045962 - AluSx SINE Alu 0 314 1 1937 130 55 21 chr3 106478616 106478964 -121045614 - MER46B DNA MER2_type 0 236 0 1486 183 48 15 chr3 106479708 106479976 -121044602 - AluJo SINE Alu -32 280 4 992 171 6 6 chr3 106481103 106481273 -121043305 - AluSg/x SINE Alu -14 298 129 242 230 79 40 chr3 106481408 106481560 -121043018 + AluYa5 SINE Alu 94 251 -50 240 35 0 0 chr3 106481626 106481655 -121042923 + (TA)n Simple_repeat Simple_repeat 1 29 0 27 0 0 0 chr3 106481862 106481889 -121042689 + AT_rich Low_complexity Low_complexity 1 27 0 1759 60 5 0 chr3 106484723 106484939 -121039639 + AluY SINE Alu 86 302 -9 1824 181 0 7 chr3 106486068 106486367 -121038211 + AluJb SINE Alu 1 297 -15 418 194 0 0 chr3 106486732 106486804 -121037774 + FLAM SINE Alu 46 117 -26 186 43 0 0 chr3 106486804 106486827 -121037751 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 296 284 34 23 chr3 106487243 106487331 -121037247 + MIR SINE MIR 20 108 -100 843 288 96 21 chr3 106487402 106487923 -121036655 + HAL1 LINE L1 1241 1800 -707 365 289 96 30 chr3 106487928 106488094 -121036484 + HAL1 LINE L1 1858 2034 -473 428 248 8 16 chr3 106488122 106488247 -121036331 + L1ME3A LINE L1 6042 6165 -5 874 224 57 91 chr3 106488303 106488530 -121036048 + HAL1 LINE L1 2062 2266 -241 2323 97 0 7 chr3 106488530 106488838 -121035740 + AluSq SINE Alu 1 306 -7 874 224 57 91 chr3 106488838 106489070 -121035508 + HAL1 LINE L1 2266 2505 -2 33 20 0 20 chr3 106489441 106489461 -121035117 + AT_rich Low_complexity Low_complexity 1 20 -30 2030 140 0 3 chr3 106489461 106489754 -121034824 + AluSx SINE Alu 1 292 -20 33 20 0 20 chr3 106489754 106489784 -121034794 + AT_rich Low_complexity Low_complexity 20 50 0 371 297 208 10 chr3 106490519 106490711 -121033867 + MIR SINE MIR 20 249 -13 1999 250 149 61 chr3 106490836 106491463 -121033115 - L2 LINE L2 -90 3223 2652 2160 128 0 0 chr3 106491463 106491753 -121032825 + AluSg SINE Alu 3 292 -18 1999 250 149 61 chr3 106491753 106491890 -121032688 - L2 LINE L2 -661 2652 2528 2200 107 0 0 chr3 106491890 106492190 -121032388 + AluSx SINE Alu 1 300 -12 1999 250 149 61 chr3 106492190 106492595 -121031983 - L2 LINE L2 -785 2528 1951 654 180 0 0 chr3 106492758 106492869 -121031709 + FLAM_C SINE Alu 1 111 -32 397 306 81 64 chr3 106492911 106493266 -121031312 + L2 LINE L2 2702 3068 -245 1660 334 67 31 chr3 106493431 106494011 -121030567 - L3 LINE CR1 -27 1550 921 2284 100 0 0 chr3 106494011 106494310 -121030268 + AluSg SINE Alu 1 299 -11 1660 334 67 31 chr3 106494310 106494674 -121029904 - L3 LINE CR1 -656 921 572 1974 150 0 3 chr3 106496998 106497292 -121027286 - AluSx SINE Alu -19 293 1 764 284 121 46 chr3 106497547 106498215 -121026363 - L2 LINE L2 -48 3265 2557 561 287 40 0 chr3 106498303 106498453 -121026125 - MIR SINE MIR -94 168 13 1204 339 120 24 chr3 106498540 106499471 -121025107 - L2 LINE L2 -888 2426 1406 905 334 24 22 chr3 106600228 106600599 -120923979 + L2 LINE L2 2433 2804 -510 460 295 52 26 chr3 106600774 106600967 -120923611 + LTR33 LTR ERVL 322 519 -2 374 368 46 46 chr3 106601472 106602152 -120922426 + ERVL LTR ERVL 764 1443 -4321 23 33 0 0 chr3 106602358 106602388 -120922190 + AT_rich Low_complexity Low_complexity 1 30 0 10915 133 35 12 chr3 106602645 106603678 -120920900 - Tigger4(Zombi) DNA MER2_type -1 2730 1637 1596 59 0 10 chr3 106603678 106603882 -120920696 - AluY SINE Alu 0 311 110 10915 133 35 12 chr3 106603882 106604628 -120919950 - Tigger4(Zombi) DNA MER2_type -1094 1637 910 728 203 31 6 chr3 106604628 106604791 -120919787 - FRAM SINE Alu -9 167 1 5346 150 30 18 chr3 106604791 106605696 -120918882 - Tigger4(Zombi) DNA MER2_type -1812 919 4 348 43 0 0 chr3 106605698 106605744 -120918834 + (TG)n Simple_repeat Simple_repeat 2 47 0 260 372 0 0 chr3 106605926 106606004 -120918574 - L3 LINE CR1 -1454 123 46 23 0 0 0 chr3 106606093 106606116 -120918462 + AT_rich Low_complexity Low_complexity 1 23 0 598 252 112 45 chr3 106606310 106606552 -120918026 - MIR SINE MIR -4 258 1 350 258 22 0 chr3 106606642 106606731 -120917847 - MIR3 SINE MIR -7 201 111 452 230 176 27 chr3 106606741 106606889 -120917689 + MIR SINE MIR 35 204 -58 280 271 43 27 chr3 106607324 106607469 -120917109 - MLT1J LTR MaLR -203 308 235 542 279 52 52 chr3 106607887 106608116 -120916462 - MIR SINE MIR 0 262 34 6819 58 27 9 chr3 106608483 106609450 -120915128 - L1PA7 LINE L1 0 6154 5180 1630 184 3 3 chr3 106609739 106610045 -120914533 - AluJb SINE Alu 0 306 1 557 267 35 79 chr3 106610725 106610788 -120913790 - MIR SINE MIR -4 258 194 1879 106 0 23 chr3 106610788 106611052 -120913526 + AluSg SINE Alu 42 299 -11 557 267 35 79 chr3 106611052 106611190 -120913388 - MIR SINE MIR -68 194 66 26 64 0 0 chr3 106611259 106611306 -120913272 + AT_rich Low_complexity Low_complexity 1 47 0 249 189 0 19 chr3 106611354 106611407 -120913171 + L2 LINE L2 3221 3272 0 21 57 0 0 chr3 106612662 106612697 -120911881 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr3 106612945 106612974 -120911604 + AT_rich Low_complexity Low_complexity 1 29 0 243 344 10 0 chr3 106613456 106613552 -120911026 + L2 LINE L2 2854 2950 -363 1939 267 123 49 chr3 106613580 106614660 -120909918 - L1MC4 LINE L1 -140 7902 6743 1644 203 52 21 chr3 106616667 106617051 -120907527 + MSTD LTR MaLR 1 396 0 279 104 0 0 chr3 106617836 106617884 -120906694 + (GA)n Simple_repeat Simple_repeat 2 49 0 1197 249 80 19 chr3 106618236 106618609 -120905969 - MSTD LTR MaLR 0 396 1 1234 286 212 5 chr3 106618979 106619546 -120905032 + L2 LINE L2 1986 2669 -645 1263 193 93 28 chr3 106619546 106619836 -120904742 + MLT1A1 LTR MaLR 1 309 -56 657 298 98 60 chr3 106619858 106620224 -120904354 + L2 LINE L2 2665 3016 -297 218 79 0 26 chr3 106620224 106620262 -120904316 + (TTTG)n Simple_repeat Simple_repeat 4 40 0 1707 139 53 0 chr3 106620262 106620528 -120904050 - AluJb SINE Alu -32 280 1 657 298 98 60 chr3 106620528 106620796 -120903782 + L2 LINE L2 3015 3306 -7 1180 225 34 76 chr3 106622096 106622452 -120902126 + MER58B DNA MER1_type 1 341 0 435 137 16 33 chr3 106622876 106623058 -120901520 + (TA)n Simple_repeat Simple_repeat 2 180 0 331 339 39 44 chr3 106623769 106623949 -120900629 - MIR SINE MIR -66 196 18 240 185 0 0 chr3 106624823 106624877 -120899701 + CT-rich Low_complexity Low_complexity 4 57 0 660 115 137 14 chr3 106625422 106625561 -120899017 + L1PA10 LINE L1 4908 5063 -1083 5806 115 11 16 chr3 106625589 106626420 -120898158 + L1PA10 LINE L1 5003 5830 -338 4798 128 36 8 chr3 106626420 106627179 -120897399 - LTR17 LTR ERV1 0 780 1 5806 115 11 16 chr3 106627179 106627517 -120897061 + L1PA10 LINE L1 5830 6168 0 383 290 88 41 chr3 106627544 106627783 -120896795 + L1ME LINE L1 5353 5608 -513 24 75 0 0 chr3 106627951 106627991 -120896587 + AT_rich Low_complexity Low_complexity 1 40 0 221 381 0 21 chr3 106628416 106628513 -120896065 + MER5A DNA MER1_type 88 182 -7 510 361 112 16 chr3 106628701 106628983 -120895595 + L2 LINE L2 2370 2624 -690 2824 173 36 41 chr3 106628983 106629597 -120894981 + LTR36 LTR ERV1 1 611 0 510 361 112 16 chr3 106629597 106629723 -120894855 + L2 LINE L2 2624 2737 -577 5704 80 60 0 chr3 106629723 106630502 -120894076 + LTR12 LTR ERV1 1 826 0 510 361 112 16 chr3 106630502 106630646 -120893932 + L2 LINE L2 2737 2976 -338 288 243 14 14 chr3 106630957 106631031 -120893547 - MLT1L LTR MaLR -539 76 3 232 282 137 23 chr3 106631782 106631913 -120892665 + MIR SINE MIR 40 185 -77 199 365 157 26 chr3 106631881 106631996 -120892582 + L2 LINE L2 3138 3267 -5 * 1050 210 118 38 chr3 106632071 106632227 -120892351 - LTR54B LTR ERV1 0 510 368 261 0 0 0 chr3 106632227 106632256 -120892322 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 1050 210 118 38 chr3 106632256 106632528 -120892050 - LTR54B LTR ERV1 -142 368 75 294 343 71 39 chr3 106635123 106635660 -120888918 + HAL1b LINE L1 84 637 -711 1321 248 67 58 chr3 106635986 106636604 -120887974 + L1MC5 LINE L1 6638 7176 -785 404 314 85 57 chr3 106636779 106637110 -120887468 - L1ME4a LINE L1 -253 5868 5529 325 222 48 0 chr3 106637144 106637207 -120887371 - MER2 DNA MER2_type 0 345 280 345 82 0 0 chr3 106637207 106637256 -120887322 + (CA)n Simple_repeat Simple_repeat 2 50 0 2253 92 3 0 chr3 106639016 106639320 -120885258 - AluSp SINE Alu 0 305 1 1862 160 45 25 chr3 106639807 106640163 -120884415 + MLT1A1 LTR MaLR 3 365 0 2286 97 0 3 chr3 106640728 106641026 -120883552 - AluSg SINE Alu -13 297 1 235 323 32 48 chr3 106641077 106641201 -120883377 + L2 LINE L2 3184 3305 -8 218 296 142 37 chr3 106641724 106641886 -120882692 - L2 LINE L2 0 3313 3135 336 102 0 0 chr3 106641987 106642036 -120882542 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 687 274 43 17 chr3 106642036 106642266 -120882312 - MER106A DNA MER1_type 0 236 1 672 237 156 44 chr3 106642560 106642881 -120881697 - MLT1J LTR MaLR -146 365 9 25 0 0 0 chr3 106642957 106642982 -120881596 + AT_rich Low_complexity Low_complexity 1 25 0 496 207 0 0 chr3 106645313 106645400 -120879178 - FLAM_A SINE Alu -46 96 10 1781 171 110 3 chr3 106645778 106646134 -120878444 + MSTD LTR MaLR 1 394 -2 2342 215 52 55 chr3 106646264 106646919 -120877659 + MLT1E1 LTR MaLR 1 653 -1 33 25 0 0 chr3 106647020 106647060 -120877518 + AT_rich Low_complexity Low_complexity 1 40 0 20520 169 15 18 chr3 106647154 106652571 -120872007 - L1PA10 LINE L1 -4 6815 1408 1148 298 227 17 chr3 106652585 106653109 -120871469 - L1PA10 LINE L1 -5529 1258 625 189 388 19 0 chr3 106653888 106653991 -120870587 + L2 LINE L2 3008 3112 -160 417 297 8 17 chr3 106655576 106655694 -120868884 - MER5A DNA MER1_type -12 177 61 2136 169 11 49 chr3 106655766 106656215 -120868363 - MSTB1 LTR MaLR 0 432 1 263 333 180 20 chr3 106656231 106656381 -120868197 + MER5A DNA MER1_type 14 187 -2 1635 167 21 18 chr3 106656677 106657000 -120867578 + AluJb SINE Alu 1 324 0 1071 162 22 18 chr3 106657018 106657247 -120867331 + L1MA4 LINE L1 6063 6292 -8 25 0 0 0 chr3 106657630 106657655 -120866923 + AT_rich Low_complexity Low_complexity 1 25 0 241 333 53 53 chr3 106658428 106658578 -120866000 + MER5B DNA MER1_type 29 178 0 348 269 26 0 chr3 106658667 106658745 -120865833 + MER5B DNA MER1_type 46 125 -53 894 206 27 0 chr3 106658946 106659130 -120865448 - MER5A DNA MER1_type 0 189 1 955 284 30 8 chr3 106659257 106659493 -120865085 - MIR SINE MIR -4 258 18 348 269 26 0 chr3 106659612 106659690 -120864888 - MER5B DNA MER1_type -53 125 46 285 280 85 25 chr3 106660161 106660397 -120864181 + L1M4 LINE L1 2744 2993 -3153 791 324 68 44 chr3 106660496 106660700 -120863878 + L1MEc LINE L1 37 234 -6162 396 0 0 0 chr3 106660700 106660744 -120863834 + (TG)n Simple_repeat Simple_repeat 1 44 0 791 324 68 44 chr3 106660744 106661225 -120863353 + L1MEc LINE L1 234 739 -5657 2162 105 0 26 chr3 106661241 106661547 -120863031 + AluSg SINE Alu 1 298 -12 1061 256 16 55 chr3 106661574 106661956 -120862622 + L1MEc LINE L1 1517 1883 -4513 375 219 12 0 chr3 106662202 106662284 -120862294 - MER58B DNA MER1_type -15 326 244 2031 146 0 10 chr3 106662287 106662596 -120861982 + AluSx SINE Alu 1 306 -6 418 250 111 6 chr3 106662810 106662982 -120861596 - L1MEd LINE L1 -5295 824 635 31 44 0 0 chr3 106662982 106663027 -120861551 + AT_rich Low_complexity Low_complexity 1 45 0 2304 303 34 56 chr3 106664283 106665280 -120859298 + L1PA15 LINE L1 2 1450 -5337 14089 219 20 29 chr3 106665314 106665863 -120858715 + L1PA15 LINE L1 1440 1993 -4823 11757 85 1 11 chr3 106665863 106668241 -120856337 + L1PA7 LINE L1 3784 6152 -2 14089 219 20 29 chr3 106668241 106670189 -120854389 + L1PA15 LINE L1 1993 3958 -2858 1968 155 7 3 chr3 106670189 106670493 -120854085 + AluJb SINE Alu 5 309 -3 14089 219 20 29 chr3 106670493 106671557 -120853021 + L1PA15 LINE L1 3958 5030 -1786 2423 90 3 0 chr3 106671557 106671867 -120852711 + AluSq SINE Alu 1 311 -2 14089 219 20 29 chr3 106671867 106673665 -120850913 + L1PA15 LINE L1 5030 6815 -1 1222 198 9 0 chr3 106673716 106673938 -120850640 - MER58A DNA MER1_type 0 224 1 233 333 17 8 chr3 106674106 106674223 -120850355 + MER103 DNA DNA 1 118 -48 291 217 48 90 chr3 106677429 106677560 -120847018 - MIR SINE MIR -92 116 31 602 212 103 24 chr3 106678370 106678535 -120846043 + MLT1B LTR MaLR 1 178 -212 1617 232 0 23 chr3 106678536 106678889 -120845689 + L1PB4 LINE L1 5806 6150 -6 278 107 18 0 chr3 106678889 106678945 -120845633 + (TA)n Simple_repeat Simple_repeat 1 57 0 640 176 34 30 chr3 106678974 106679135 -120845443 + MLT1B LTR MaLR 227 390 0 1601 184 42 52 chr3 106680854 106681239 -120843339 - MLT1B LTR MaLR -9 381 1 201 200 20 20 chr3 106682375 106682425 -120842153 + CT-rich Low_complexity Low_complexity 2 51 0 22 56 0 0 chr3 106683005 106683041 -120841537 + AT_rich Low_complexity Low_complexity 1 36 0 7200 188 25 12 chr3 106684030 106686430 -120838148 - L1MA7 LINE L1 -2 6493 4058 1010 241 52 43 chr3 106686433 106686761 -120837817 - L1MA7 LINE L1 -5950 331 1 890 235 23 14 chr3 106687017 106687234 -120837344 - MER20 DNA MER1_type 0 219 1 418 294 128 28 chr3 106687323 106687534 -120837044 + MIR SINE MIR 31 262 0 1044 74 25 6 chr3 106687860 106688023 -120836555 + (TTTC)n Simple_repeat Simple_repeat 4 169 0 187 176 15 15 chr3 106689012 106689080 -120835498 + (TA)n Simple_repeat Simple_repeat 2 69 0 282 318 91 0 chr3 106689155 106689265 -120835313 - L2 LINE L2 0 3272 3153 274 310 0 0 chr3 106689522 106689593 -120834985 - HAL1 LINE L1 -2029 478 408 310 240 50 50 chr3 106689679 106689779 -120834799 - HAL1 LINE L1 -2339 168 69 213 65 0 0 chr3 106690545 106690576 -120834002 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1125 174 47 47 chr3 106690578 106690813 -120833765 - AluJb SINE Alu -77 235 1 239 91 0 0 chr3 106690869 106690902 -120833676 - MADE1 DNA Mariner -2 78 46 482 319 7 7 chr3 106690919 106691063 -120833515 + MER5B DNA MER1_type 35 178 0 225 0 0 0 chr3 106692222 106692247 -120832331 + (T)n Simple_repeat Simple_repeat 1 25 0 24 85 0 0 chr3 106692445 106692504 -120832074 + AT_rich Low_complexity Low_complexity 1 59 0 1078 176 43 19 chr3 106692538 106692748 -120831830 + MER20 DNA MER1_type 2 216 -3 2423 109 58 21 chr3 106694188 106694620 -120829958 - LTR7 LTR ERV1 -2 448 1 668 272 89 37 chr3 106695168 106695289 -120829289 + MIR SINE MIR 4 117 -145 607 292 41 18 chr3 106695289 106695508 -120829070 + MER58A DNA MER1_type 1 224 0 668 272 89 37 chr3 106695508 106695632 -120828946 + MIR SINE MIR 117 262 0 21 89 0 0 chr3 106696986 106697042 -120827536 + AT_rich Low_complexity Low_complexity 1 56 0 1370 215 0 11 chr3 106697156 106697435 -120827143 - AluJo SINE Alu 0 312 37 506 274 29 46 chr3 106698806 106698981 -120825597 + MIR SINE MIR 91 262 0 29 0 0 0 chr3 106699005 106699034 -120825544 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr3 106699295 106699319 -120825259 + (TG)n Simple_repeat Simple_repeat 1 24 0 2943 263 15 47 chr3 106699416 106700329 -120824249 + L1PA15 LINE L1 1 884 -5903 14870 226 30 16 chr3 106700360 106702073 -120822505 + L1PA15 LINE L1 1212 2899 -3917 180 0 0 0 chr3 106702073 106702093 -120822485 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 14870 226 30 16 chr3 106702093 106705890 -120818688 + L1PA15 LINE L1 2899 6816 0 2252 85 25 6 chr3 106706177 106706496 -120818082 + L1PA6 LINE L1 5822 6146 -8 729 284 53 0 chr3 106706570 106706778 -120817800 + MIR SINE MIR 1 219 -43 22 80 0 0 chr3 106706844 106706894 -120817684 + AT_rich Low_complexity Low_complexity 1 50 0 398 289 82 58 chr3 106706944 106707435 -120817143 - L1MEd LINE L1 -4975 1144 597 5683 125 16 1 chr3 106707699 106708532 -120816046 + THE1B-int LTR MaLR 736 1580 0 2209 159 8 0 chr3 106708532 106708891 -120815687 + THE1B LTR MaLR 1 362 -2 25 0 0 0 chr3 106711842 106711867 -120812711 + AT_rich Low_complexity Low_complexity 1 25 0 28 29 0 0 chr3 106712055 106712090 -120812488 + AT_rich Low_complexity Low_complexity 1 35 0 35 41 0 0 chr3 106712373 106712422 -120812156 + AT_rich Low_complexity Low_complexity 1 49 0 292 341 140 0 chr3 106712765 106712944 -120811634 - MIR SINE MIR -6 256 53 823 31 0 0 chr3 106712978 106713075 -120811503 + AluY SINE Alu 205 301 -10 555 291 57 32 chr3 106713293 106713367 -120811211 - LTR40b LTR ERVL -4 458 387 243 61 0 0 chr3 106713367 106713400 -120811178 + (CA)n Simple_repeat Simple_repeat 1 33 0 555 291 57 32 chr3 106713400 106713607 -120810971 - LTR40b LTR ERVL -75 387 170 637 243 112 63 chr3 106714776 106715142 -120809436 - HAL1 LINE L1 -443 2064 1681 510 301 15 10 chr3 106715523 106715722 -120808856 - HAL1 LINE L1 -854 1653 1454 280 128 4 0 chr3 106715908 106715971 -120808607 - L1MA7 LINE L1 0 6291 6237 434 257 164 6 chr3 106716070 106716253 -120808325 + HAL1b LINE L1 614 825 -523 300 309 12 0 chr3 106717115 106717199 -120807379 - MIR SINE MIR -86 122 38 193 183 48 0 chr3 106718108 106718212 -120806366 + (TA)n Simple_repeat Simple_repeat 2 110 0 898 270 9 5 chr3 106718395 106718617 -120805961 + MER58A DNA MER1_type 1 223 -1 356 285 131 58 chr3 106718647 106718703 -120805875 - MER5B DNA MER1_type -29 149 99 1873 156 140 11 chr3 106718703 106719082 -120805496 + MSTA LTR MaLR 1 428 0 356 285 131 58 chr3 106719082 106719162 -120805416 - MER5B DNA MER1_type -79 99 3 2019 125 0 14 chr3 106719958 106720255 -120804323 + AluY SINE Alu 1 293 -18 7637 22 0 6 chr3 106720258 106721194 -120803384 + L1PA3 LINE L1 5225 6155 0 40 21 0 0 chr3 106721290 106721337 -120803241 + AT_rich Low_complexity Low_complexity 1 47 0 274 382 68 21 chr3 106721704 106722044 -120802534 - L2 LINE L2 -502 2812 2457 4136 227 82 1 chr3 106723643 106724538 -120800040 + L1PA13 LINE L1 1 967 -5820 5350 223 84 17 chr3 106724548 106726325 -120798253 + L1PA13 LINE L1 1013 2929 -3868 1389 52 0 6 chr3 106726325 106726496 -120798082 + L1PA5 LINE L1 5976 6146 -8 351 0 0 0 chr3 106726496 106726535 -120798043 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 14913 187 26 3 chr3 106726535 106729717 -120794861 + L1PA13 LINE L1 2931 6175 -639 2334 91 0 16 chr3 106729717 106730035 -120794543 + AluSp SINE Alu 1 313 0 14913 187 26 3 chr3 106730035 106730679 -120793899 + L1PA13 LINE L1 6175 6803 -11 24 0 0 0 chr3 106731191 106731215 -120793363 + AT_rich Low_complexity Low_complexity 1 24 0 2561 120 73 22 chr3 106731501 106732008 -120792570 + L1MA8 LINE L1 5759 6291 0 485 308 147 55 chr3 106732138 106732499 -120792079 - L2 LINE L2 -36 3277 2884 316 347 105 32 chr3 106733025 106733215 -120791363 + MIR SINE MIR 49 252 -10 21 0 0 0 chr3 106734110 106734131 -120790447 + AT_rich Low_complexity Low_complexity 1 21 0 1165 155 5 26 chr3 106734794 106734986 -120789592 - MER1B DNA MER1_type 0 339 152 922 247 199 7 chr3 106734986 106735273 -120789305 + LTR28 LTR ERV1 1 342 -678 522 253 32 65 chr3 106735282 106735453 -120789125 + MER61D LTR ERV1 339 1229 -19 698 222 26 9 chr3 106735640 106735780 -120788798 - MER1B DNA MER1_type -140 157 1 192 100 40 20 chr3 106736957 106737007 -120787571 + A-rich Low_complexity Low_complexity 3 53 0 37 0 0 0 chr3 106737058 106737095 -120787483 + AT_rich Low_complexity Low_complexity 1 37 0 2103 58 4 8 chr3 106737560 106737818 -120786760 - AluY SINE Alu -50 261 5 236 109 0 43 chr3 106740558 106740604 -120783974 + (TTTC)n Simple_repeat Simple_repeat 2 45 0 29 0 0 0 chr3 106742071 106742100 -120782478 + AT_rich Low_complexity Low_complexity 1 29 0 433 287 33 8 chr3 106743699 106743821 -120780757 - L2 LINE L2 0 3313 3189 186 43 0 0 chr3 106744331 106744354 -120780224 + (TGAA)n Simple_repeat Simple_repeat 4 26 0 320 292 81 44 chr3 106745470 106745659 -120778919 - MIR SINE MIR -50 212 20 212 100 25 0 chr3 106746745 106746785 -120777793 + (TA)n Simple_repeat Simple_repeat 1 41 0 273 341 104 28 chr3 106747302 106747484 -120777094 - MIR3 SINE MIR -5 203 8 263 324 0 0 chr3 106749445 106749513 -120775065 - MIR3 SINE MIR -49 159 92 207 191 0 0 chr3 106750552 106750594 -120773984 + T-rich Low_complexity Low_complexity 1 42 0 1754 204 134 89 chr3 106750736 106751524 -120773054 - LTR1B LTR ERV1 0 826 3 14037 199 32 43 chr3 106751526 106754633 -120769945 - HUERS-P2 LTR ERV1 0 3088 75 1252 234 63 75 chr3 106754769 106755532 -120769046 - LTR1B LTR ERV1 0 826 1 502 272 15 0 chr3 106757084 106757220 -120767358 - MLT1H LTR MaLR -3 546 409 632 99 0 0 chr3 106757261 106757352 -120767226 - L1P LINE L1 -1302 4844 4754 394 251 63 99 chr3 106757377 106757600 -120766978 - MLT1H LTR MaLR -214 335 121 6690 86 1 3 chr3 106757947 106759424 -120765154 + L1PA8 LINE L1 4697 6172 0 195 204 0 0 chr3 106760081 106760130 -120764448 + (TA)n Simple_repeat Simple_repeat 2 50 0 207 158 0 0 chr3 106761146 106761184 -120763394 + L2 LINE L2 3272 3309 -4 1827 184 36 0 chr3 106761300 106761632 -120762946 - MER2 DNA MER2_type 0 344 1 265 182 81 81 chr3 106761977 106762076 -120762502 + MIR SINE MIR 86 184 -78 218 348 26 0 chr3 106762307 106762422 -120762156 + L2 LINE L2 3112 3229 -84 316 273 61 20 chr3 106762480 106762579 -120761999 - MER5A DNA MER1_type 0 189 87 1705 216 28 3 chr3 106763417 106763773 -120760805 - MLT1A1 LTR MaLR 0 365 1 249 324 0 0 chr3 106764527 106764595 -120759983 - Charlie8 DNA MER1_type -8 2409 2342 645 310 39 30 chr3 106764612 106764947 -120759631 - Charlie8 DNA MER1_type -2006 411 74 1225 284 127 17 chr3 106766114 106766585 -120757993 - MLT1G1 LTR MaLR 0 595 73 2484 136 8 11 chr3 106766724 106767100 -120757478 - THE1C LTR MaLR 0 375 1 211 275 44 132 chr3 106767426 106767608 -120756970 + MIR SINE MIR 47 212 -50 2025 131 42 53 chr3 106767958 106768317 -120756261 - THE1B LTR MaLR -2 362 8 309 250 29 0 chr3 106770907 106770975 -120753603 + Charlie5 DNA MER1_type 1 70 -2542 * 726 152 33 7 chr3 106770973 106771124 -120753454 + Charlie5 DNA MER1_type 2430 2584 -28 23 0 0 0 chr3 106771759 106771782 -120752796 + AT_rich Low_complexity Low_complexity 1 23 0 482 279 102 40 chr3 106771925 106772174 -120752404 - L1ME4a LINE L1 -1 6120 5888 1584 118 57 65 chr3 106772174 106772453 -120752125 + AluSx SINE Alu 21 297 -15 482 279 102 40 chr3 106772453 106772774 -120751804 - L1ME4a LINE L1 -233 5888 5515 32 75 0 0 chr3 106772881 106772948 -120751630 + AT_rich Low_complexity Low_complexity 1 67 0 345 300 75 78 chr3 106774543 106774863 -120749715 - ERVL LTR ERVL -435 5329 5011 424 320 51 13 chr3 106775539 106775815 -120748763 - ERVL LTR ERVL -1250 4235 3967 957 318 67 21 chr3 106776072 106776547 -120748031 - ERVL LTR ERVL -2096 3389 2893 791 347 87 35 chr3 106776660 106777384 -120747194 - ERVL LTR ERVL -2270 2726 1965 2123 172 21 18 chr3 106777514 106777674 -120746904 + MLT1B LTR MaLR 1 159 -231 2044 150 135 5 chr3 106777674 106778053 -120746525 + MSTA LTR MaLR 1 428 0 2123 172 21 18 chr3 106778053 106778281 -120746297 + MLT1B LTR MaLR 159 390 0 1689 157 173 16 chr3 106778850 106779220 -120745358 + MSTA LTR MaLR 1 428 0 8983 145 29 36 chr3 106779222 106780804 -120743774 + MSTA-int LTR MaLR 3 1573 -7 1236 127 216 4 chr3 106780811 106781056 -120743522 + MSTA LTR MaLR 1 297 -131 586 368 36 11 chr3 106781552 106781829 -120742749 - LTR16C LTR ERVL -90 401 118 1216 233 3 22 chr3 106782529 106782813 -120741765 + L1PB4 LINE L1 5892 6299 -2 310 250 36 0 chr3 106783264 106783348 -120741230 + MLT1L LTR MaLR 529 615 0 1669 237 36 36 chr3 106783416 106783913 -120740665 - L1ME1 LINE L1 -4 6162 5666 438 267 31 21 chr3 106783949 106784140 -120740438 - L1ME1 LINE L1 -1123 5023 4831 6194 219 28 7 chr3 106784143 106785410 -120739168 - THE1C-int LTR MaLR -353 1298 5 2330 141 6 16 chr3 106785414 106785777 -120738801 - THE1C LTR MaLR -16 359 1 981 288 62 27 chr3 106785830 106786059 -120738519 - L1ME1 LINE L1 -2453 3693 3473 1072 184 24 5 chr3 106786059 106786265 -120738313 - MER6B DNA MER2_type 0 210 1 981 288 62 27 chr3 106786265 106786699 -120737879 - L1ME1 LINE L1 -2673 3473 3007 198 0 0 0 chr3 106787164 106787186 -120737392 + (CA)n Simple_repeat Simple_repeat 2 23 0 2400 83 3 3 chr3 106787275 106787576 -120737002 - AluSp SINE Alu -11 302 2 4401 135 3 8 chr3 106789097 106789803 -120734775 + L1PA13 LINE L1 5461 6162 -1 1287 259 106 24 chr3 106790614 106791077 -120733501 + MLT1D LTR MaLR 1 501 -4 194 62 31 0 chr3 106791407 106791439 -120733139 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 309 325 121 9 chr3 106791509 106791740 -120732838 + L1M2 LINE L1 1659 1915 -4934 1959 141 42 67 chr3 106793259 106793602 -120730976 - Tigger2 DNA MER2_type -2121 597 264 665 231 0 0 chr3 106793602 106793732 -120730846 - FLAM_C SINE Alu -2 131 2 1959 141 42 67 chr3 106793732 106793792 -120730786 - Tigger2 DNA MER2_type -2454 264 204 244 327 77 36 chr3 106794190 106794358 -120730220 - MIR3 SINE MIR -15 193 19 1603 195 30 28 chr3 106794478 106794842 -120729736 + MLT1A1 LTR MaLR 1 365 0 227 265 159 45 chr3 106794870 106795002 -120729576 + MIR3 SINE MIR 39 185 -23 25 0 0 0 chr3 106795723 106795748 -120728830 + AT_rich Low_complexity Low_complexity 1 25 0 378 370 23 0 chr3 106797746 106797919 -120726659 + ERVL LTR ERVL 1492 1668 -4096 3724 105 0 4 chr3 106797976 106798489 -120726089 + MER9 LTR ERVK 1 511 0 266 390 7 7 chr3 106798651 106798805 -120725773 + ERVL LTR ERVL 1906 2059 -3705 832 330 82 17 chr3 106798921 106799333 -120725245 + ERVL LTR ERVL 2291 2729 -3035 23 33 0 0 chr3 106799816 106799846 -120724732 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr3 106800877 106800910 -120723668 + AT_rich Low_complexity Low_complexity 1 33 0 29 0 0 0 chr3 106800955 106800984 -120723594 + AT_rich Low_complexity Low_complexity 1 29 0 1253 320 69 57 chr3 106802412 106803176 -120721402 - ERVL LTR ERVL -1127 4637 3860 293 0 27 0 chr3 106803176 106803213 -120721365 + (CA)n Simple_repeat Simple_repeat 2 39 0 1253 320 69 57 chr3 106803213 106803336 -120721242 - ERVL LTR ERVL -1904 3860 3740 415 354 110 4 chr3 106803376 106803622 -120720956 - ERVL LTR ERVL -2078 3686 3415 264 267 151 26 chr3 106803773 106804005 -120720573 - L1M4 LINE L1 -1163 4983 4723 388 192 51 13 chr3 106804398 106804476 -120720102 - Tigger5 DNA MER2_type 0 2323 2243 * 408 241 0 0 chr3 106804467 106804546 -120720032 + Tigger5 DNA MER2_type 2242 2320 -3 243 224 0 0 chr3 106804546 106804594 -120719984 - Tigger5 DNA MER2_type -2245 78 31 755 185 57 146 chr3 106804658 106805111 -120719467 - L1ME2 LINE L1 -9 6155 5743 2138 177 39 18 chr3 106805122 106805562 -120719016 - L1PA16 LINE L1 -2 6164 5716 2504 157 52 9 chr3 106805569 106806034 -120718544 - L1PA15 LINE L1 -204 6664 6180 693 168 0 0 chr3 106806040 106806153 -120718425 - L1PA15 LINE L1 -3911 2938 2826 5164 58 25 0 chr3 106806157 106806810 -120717768 - L1PA7 LINE L1 -8 6146 5478 556 93 36 21 chr3 106806810 106806950 -120717628 + (TA)n Simple_repeat Simple_repeat 2 143 0 7147 43 11 3 chr3 106806950 106808427 -120716151 - L1PA4 LINE L1 -11 6144 4660 12505 64 1 1 chr3 106808546 106810962 -120713616 + L1PA6 LINE L1 3719 6154 0 22 0 0 0 chr3 106811374 106811396 -120713182 + AT_rich Low_complexity Low_complexity 1 22 0 208 147 0 0 chr3 106811544 106811578 -120713000 + (T)n Simple_repeat Simple_repeat 1 34 0 3677 198 23 46 chr3 106811697 106812955 -120711623 - L1PB3 LINE L1 -4 6150 4924 227 98 39 59 chr3 106813102 106813153 -120711425 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 253 308 67 17 chr3 106813278 106813398 -120711180 - L2 LINE L2 -8 3305 3180 211 340 40 67 chr3 106813588 106813841 -120710737 - L2 LINE L2 -414 2900 2655 864 306 23 17 chr3 106814030 106814331 -120710247 + MER93a LTR ERV1 93 395 -7 1288 239 31 29 chr3 106814667 106815048 -120709530 - MLT1C LTR MaLR -85 382 1 200 275 0 0 chr3 106815883 106815952 -120708626 + T-rich Low_complexity Low_complexity 1 69 0 268 282 18 64 chr3 106816039 106816149 -120708429 - MIR SINE MIR -109 153 49 1469 204 15 6 chr3 106816258 106816582 -120707996 + L1MC2 LINE L1 4538 4864 -1282 533 255 117 5 chr3 106816905 106817093 -120707485 - LTR33 LTR ERVL -307 214 6 30 45 0 0 chr3 106817601 106817645 -120706933 + AT_rich Low_complexity Low_complexity 1 44 0 1568 171 185 3 chr3 106819352 106819714 -120704864 + MSTA LTR MaLR 1 428 0 7262 138 22 61 chr3 106819716 106821042 -120703536 + MSTA-int LTR MaLR 3 1286 -294 2637 143 9 5 chr3 106821054 106821486 -120703092 + MSTA-int LTR MaLR 1218 1651 0 1487 181 197 25 chr3 106821486 106821851 -120702727 + MSTA LTR MaLR 1 428 0 316 290 0 11 chr3 106822509 106822602 -120701976 - ERVL LTR ERVL -3220 2544 2453 316 289 23 8 chr3 106822649 106822777 -120701801 - ERVL LTR ERVL -3394 2370 2241 2557 20 3 0 chr3 106823131 106823427 -120701151 - L1PA3 LINE L1 -379 5776 5480 3225 29 0 0 chr3 106823427 106823802 -120700776 + L1PA3 LINE L1 5777 6152 -3 364 266 9 0 chr3 106823813 106823922 -120700656 + L1ME3A LINE L1 5170 5279 -867 231 188 0 0 chr3 106823920 106823968 -120700610 + L1PA11 LINE L1 6127 6174 0 * 4381 183 26 22 chr3 106824538 106825626 -120698952 + L1MC2 LINE L1 5013 6112 -232 567 231 64 21 chr3 106825727 106825961 -120698617 + L1MC2 LINE L1 5989 6232 -112 4178 226 16 10 chr3 106826868 106827913 -120696665 + L1 LINE L1 3140 4191 -1955 189 240 0 0 chr3 106828292 106828342 -120696236 - MER5C DNA MER1_type -200 124 75 1078 191 66 0 chr3 106828437 106828710 -120695868 - L1 LINE L1 -2676 3470 3180 918 253 76 9 chr3 106828734 106829062 -120695516 + L1ME3A LINE L1 5689 6038 -132 182 91 30 0 chr3 106829099 106829132 -120695446 + (TGGA)n Simple_repeat Simple_repeat 4 37 0 24 0 0 0 chr3 106829445 106829469 -120695109 + AT_rich Low_complexity Low_complexity 1 24 0 630 304 31 18 chr3 106829762 106829989 -120694589 + MIR SINE MIR 33 262 0 252 256 0 26 chr3 106830120 106830198 -120694380 + GA-rich Low_complexity Low_complexity 5 80 0 2510 184 72 31 chr3 106830244 106830857 -120693721 + L1MA9 LINE L1 5675 6312 0 1052 302 20 34 chr3 106830984 106831342 -120693236 + LTR16B LTR ERVL 108 460 -4 1385 101 106 0 chr3 106831483 106831691 -120692887 + MER30 DNA MER1_type 1 230 0 301 380 0 0 chr3 106832174 106832274 -120692304 + L2 LINE L2 2544 2643 -671 2565 107 16 0 chr3 106832307 106832671 -120691907 - L1P3 LINE L1 -5401 1060 691 202 256 60 3 chr3 106832684 106832824 -120691754 + MIR SINE MIR 75 261 -1 254 154 0 0 chr3 106832950 106832989 -120691589 - L2 LINE L2 -8 3305 3267 401 367 67 25 chr3 106833440 106833887 -120690691 - L2 LINE L2 -217 3055 2579 196 353 101 8 chr3 106833951 106834070 -120690508 + L2 LINE L2 3143 3272 0 416 319 72 18 chr3 106834091 106834370 -120690208 - L2 LINE L2 -778 2536 2243 681 290 61 14 chr3 106834419 106834633 -120689945 - MIR SINE MIR -38 224 1 394 338 107 11 chr3 106834787 106835059 -120689519 - L2 LINE L2 -1245 2069 1772 194 384 14 29 chr3 106835277 106835415 -120689163 - L2 LINE L2 -1863 1451 1316 519 354 29 32 chr3 106835619 106835798 -120688780 - L2 LINE L2 -2735 579 400 1225 191 60 106 chr3 106835798 106835838 -120688740 - MLT2D LTR ERVL 0 414 374 264 100 0 0 chr3 106835838 106835878 -120688700 + (TG)n Simple_repeat Simple_repeat 2 41 0 1225 191 60 106 chr3 106835878 106836271 -120688307 - MLT2D LTR ERVL -40 374 1 519 354 29 32 chr3 106836271 106836371 -120688207 - L2 LINE L2 -2914 400 301 186 43 0 0 chr3 106836868 106836891 -120687687 + (T)n Simple_repeat Simple_repeat 1 23 0 186 311 78 68 chr3 106837040 106837143 -120687435 - L2 LINE L2 -9 3263 3160 1668 232 48 40 chr3 106837322 106837818 -120686760 - MLT1D LTR MaLR -5 500 1 246 265 15 0 chr3 106838064 106838132 -120686446 + L2 LINE L2 3168 3236 -36 33 43 0 0 chr3 106838187 106838234 -120686344 + AT_rich Low_complexity Low_complexity 1 47 0 316 362 25 6 chr3 106838240 106838403 -120686175 + MIR SINE MIR 84 249 -13 539 287 32 13 chr3 106838653 106838810 -120685768 + MLT1E LTR MaLR 1 160 -433 1625 251 81 45 chr3 106838811 106838914 -120685664 - MLT1E2 LTR MaLR -2 624 526 2320 79 0 0 chr3 106838914 106839205 -120685373 + AluSc SINE Alu 1 291 -18 1625 251 81 45 chr3 106839205 106839694 -120684884 - MLT1E2 LTR MaLR -100 526 11 21 0 0 0 chr3 106839708 106839729 -120684849 + AT_rich Low_complexity Low_complexity 1 21 0 1173 254 80 23 chr3 106839729 106840127 -120684451 + MLT1E LTR MaLR 173 593 0 276 324 37 19 chr3 106840136 106840244 -120684334 - MER5A DNA MER1_type -73 116 7 420 220 199 73 chr3 106841495 106841686 -120682892 + MER58C DNA MER1_type 1 215 0 763 372 20 57 chr3 106841760 106842166 -120682412 - MLT1B LTR MaLR -6 373 2 222 421 9 9 chr3 106842231 106842338 -120682240 - MIR3 SINE MIR -87 121 15 768 139 0 0 chr3 106842898 106843020 -120681558 + L1PA16 LINE L1 5869 5990 -176 875 193 62 45 chr3 106843020 106843264 -120681314 - MER1B DNA MER1_type -91 248 1 766 169 110 0 chr3 106843264 106843418 -120681160 + L1PA16 LINE L1 5987 6157 -9 375 228 0 0 chr3 106843423 106843515 -120681063 + (TA)n Simple_repeat Simple_repeat 1 92 0 294 217 50 17 chr3 106843552 106843672 -120680906 + (TA)n Simple_repeat Simple_repeat 1 124 0 33 25 0 0 chr3 106845577 106845617 -120678961 + AT_rich Low_complexity Low_complexity 1 40 0 547 289 30 15 chr3 106845759 106845960 -120678618 - L1ME1 LINE L1 -14 6152 5949 5977 175 17 0 chr3 106846063 106847943 -120676635 + L1PB1 LINE L1 4235 6148 -3 21 89 0 0 chr3 106848154 106848210 -120676368 + AT_rich Low_complexity Low_complexity 1 56 0 557 197 29 22 chr3 106848232 106848369 -120676209 - L1M4 LINE L1 -869 5277 5140 3026 340 49 38 chr3 106848370 106851006 -120673572 - HERV16 LTR ERVL -1388 4266 1548 535 322 89 10 chr3 106851552 106851844 -120672734 - HERV16 LTR ERVL -4633 363 49 200 296 0 14 chr3 106852403 106852474 -120672104 + CT-rich Low_complexity Low_complexity 2 71 0 21 36 0 0 chr3 106853247 106853275 -120671303 + AT_rich Low_complexity Low_complexity 1 28 0 189 0 0 0 chr3 106853955 106853976 -120670602 + (T)n Simple_repeat Simple_repeat 1 21 0 541 56 0 0 chr3 106853976 106854047 -120670531 - LTR17 LTR ERV1 -454 326 256 706 281 14 14 chr3 106855313 106855523 -120669055 + MER63A DNA MER1_type 1 210 0 1322 297 54 7 chr3 106855531 106855995 -120668583 + LTR16C LTR ERVL 2 487 -4 2210 117 0 0 chr3 106856274 106856573 -120668005 - AluSq SINE Alu -14 299 1 230 0 33 0 chr3 106858134 106858164 -120666414 + (TG)n Simple_repeat Simple_repeat 2 32 0 269 296 74 19 chr3 106858948 106859056 -120665522 + MIR SINE MIR 77 190 -72 * 670 333 106 25 chr3 106859020 106859537 -120665041 - L2 LINE L2 -787 2527 1969 573 360 80 29 chr3 106859554 106860233 -120664345 + L2 LINE L2 2563 3269 -3 259 164 15 15 chr3 106860554 106860621 -120663957 + CT-rich Low_complexity Low_complexity 2 68 0 219 69 0 0 chr3 106860767 106860796 -120663782 + (TA)n Simple_repeat Simple_repeat 1 29 0 400 309 8 8 chr3 106861211 106861334 -120663244 - MLT1G LTR MaLR -28 562 440 380 266 109 41 chr3 106861354 106861619 -120662959 - MLT1H1 LTR MaLR -300 255 1 23 33 0 0 chr3 106862083 106862113 -120662465 + AT_rich Low_complexity Low_complexity 1 30 0 203 233 0 0 chr3 106862955 106862998 -120661580 + CT-rich Low_complexity Low_complexity 2 44 0 279 389 7 7 chr3 106863107 106863246 -120661332 - MLT1K LTR MaLR -294 294 156 234 115 49 0 chr3 106863357 106863418 -120661160 + (TA)n Simple_repeat Simple_repeat 1 64 0 945 92 0 0 chr3 106864100 106864220 -120660358 - AluSq/x SINE Alu -180 133 14 1286 109 0 0 chr3 106864238 106864413 -120660165 - AluSg/x SINE Alu 0 310 136 21 0 0 0 chr3 106864598 106864619 -120659959 + AT_rich Low_complexity Low_complexity 1 21 0 514 294 76 41 chr3 106865857 106866054 -120658524 + MIR SINE MIR 49 252 -10 301 21 21 21 chr3 106866179 106866226 -120658352 + (CAAAA)n Simple_repeat Simple_repeat 3 49 0 263 341 38 8 chr3 106866892 106867024 -120657554 + ERVL LTR ERVL 4025 4160 -1604 24 53 0 0 chr3 106867314 106867352 -120657226 + AT_rich Low_complexity Low_complexity 1 38 0 2204 131 0 0 chr3 106867602 106867915 -120656663 + AluSq SINE Alu 1 313 0 359 341 169 31 chr3 106868564 106868913 -120655665 - L3 LINE CR1 -1 1576 1180 283 241 0 0 chr3 106869515 106869598 -120654980 + L1PB4 LINE L1 6074 6156 0 1035 297 77 30 chr3 106869758 106870419 -120654159 - L1MC4 LINE L1 -221 7821 6966 1985 91 37 57 chr3 106870419 106870717 -120653861 - AluSg SINE Alu -18 292 1 1035 297 77 30 chr3 106870717 106870786 -120653792 - L1MC4 LINE L1 -1076 6966 6902 292 203 0 0 chr3 106870790 106870849 -120653729 - MER41B LTR ERV1 -94 541 483 917 243 23 160 chr3 106870851 106871381 -120653197 - L1MC4 LINE L1 -1111 6931 6439 306 67 0 0 chr3 106872493 106872538 -120652040 + (CA)n Simple_repeat Simple_repeat 2 46 0 326 258 10 16 chr3 106872932 106873126 -120651452 + CT-rich Low_complexity Low_complexity 1 192 0 391 217 0 49 chr3 106873153 106873337 -120651241 + CT-rich Low_complexity Low_complexity 3 177 0 223 83 0 28 chr3 106873337 106873373 -120651205 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 732 195 17 0 chr3 106873373 106873547 -120651031 + CT-rich Low_complexity Low_complexity 4 180 0 205 275 0 14 chr3 106873550 106873619 -120650959 + T-rich Low_complexity Low_complexity 2 69 0 2072 133 0 0 chr3 106874269 106874570 -120650008 - AluSx SINE Alu -11 301 1 197 349 0 16 chr3 106874715 106874778 -120649800 - MIR SINE MIR -164 98 37 2219 120 0 0 chr3 106875526 106875827 -120648751 + AluSg SINE Alu 1 301 -9 24636 102 7 13 chr3 106875852 106879447 -120645131 + L1P LINE L1 11 3584 -2562 297 0 0 0 chr3 106880657 106880690 -120643888 + (CA)n Simple_repeat Simple_repeat 2 34 0 520 330 88 14 chr3 106880969 106881184 -120643394 + MLT1J LTR MaLR 64 294 -217 911 136 7 7 chr3 106881933 106882088 -120642490 + AluSp/q SINE Alu 159 313 0 787 314 47 54 chr3 106882298 106882839 -120641739 + L2 LINE L2 2778 3313 0 27 29 0 0 chr3 106883396 106883430 -120641148 + AT_rich Low_complexity Low_complexity 1 34 0 332 295 238 5 chr3 106884142 106884352 -120640226 - MIR SINE MIR 0 262 4 197 370 29 7 chr3 106884709 106884847 -120639731 + MIR SINE MIR 88 228 -34 1187 281 119 8 chr3 106887199 106887676 -120636902 + L2 LINE L2 1141 1670 -1644 696 217 1 40 chr3 106887676 106887878 -120636700 + L1MD2 LINE L1 5734 5928 -243 22 80 0 0 chr3 106888383 106888433 -120636145 + AT_rich Low_complexity Low_complexity 1 50 0 211 294 59 15 chr3 106890070 106890138 -120634440 + L2 LINE L2 3150 3220 -52 363 316 142 18 chr3 106890412 106890637 -120633941 + MLT1I LTR MaLR 101 353 -56 328 273 119 21 chr3 106890772 106890915 -120633663 - L1ME4a LINE L1 -2 6119 5963 26 0 0 0 chr3 106890970 106890996 -120633582 + AT_rich Low_complexity Low_complexity 1 26 0 378 61 0 0 chr3 106891723 106891772 -120632806 + (CA)n Simple_repeat Simple_repeat 2 50 0 256 171 40 26 chr3 106892186 106892262 -120632316 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 1884 144 73 14 chr3 106892285 106892639 -120631939 - THE1C LTR MaLR 0 375 1 1735 233 53 30 chr3 106892656 106893099 -120631479 - MLT2B2 LTR ERVL -44 459 15 217 357 179 0 chr3 106893132 106893244 -120631334 + MIR SINE MIR 44 175 -87 25 51 0 0 chr3 106894528 106894567 -120630011 + AT_rich Low_complexity Low_complexity 1 39 0 2460 37 17 3 chr3 106895303 106895598 -120628980 + AluY SINE Alu 1 299 -12 1276 193 10 109 chr3 106895880 106896285 -120628293 + MLT1A1 LTR MaLR 1 365 0 645 309 50 5 chr3 106897043 106897244 -120627334 + MIR SINE MIR 9 218 -44 409 342 31 31 chr3 106898110 106898338 -120626240 + MIR SINE MIR 9 236 -26 393 143 0 0 chr3 106898378 106898441 -120626137 + MLT1A1-int LTR MaLR 1671 1733 -2 1412 186 41 32 chr3 106898460 106898804 -120625774 + MLT1A1 LTR MaLR 19 365 0 21 36 0 0 chr3 106898878 106898906 -120625672 + AT_rich Low_complexity Low_complexity 1 28 0 256 393 34 22 chr3 106898961 106899139 -120625439 + L2 LINE L2 2608 2787 -527 578 172 81 126 chr3 106899384 106899526 -120625052 + MLT1A1 LTR MaLR 1 148 -217 2027 112 3 7 chr3 106899526 106899812 -120624766 + AluSg SINE Alu 1 285 -25 464 0 18 0 chr3 106899815 106899871 -120624707 + (TATAA)n Simple_repeat Simple_repeat 3 59 0 578 172 81 126 chr3 106899871 106899922 -120624656 + MLT1A1 LTR MaLR 150 189 -176 302 93 0 0 chr3 106899924 106899967 -120624611 + MLT1A1 LTR MaLR 340 382 -14 323 89 0 0 chr3 106900051 106900096 -120624482 + U5 snRNA snRNA 1 45 -71 340 248 67 54 chr3 106900310 106900459 -120624119 - MIR SINE MIR -25 237 87 23 0 0 0 chr3 106900684 106900707 -120623871 + AT_rich Low_complexity Low_complexity 1 23 0 303 175 0 0 chr3 106901258 106901315 -120623263 + (TG)n Simple_repeat Simple_repeat 2 58 0 321 266 126 80 chr3 106903150 106903349 -120621229 + Charlie8 DNA MER1_type 28 235 -2182 708 161 0 0 chr3 106903550 106903674 -120620904 - L1MA3 LINE L1 -2 6303 6180 2782 10 0 0 chr3 106903887 106904189 -120620389 - AluYa5 SINE Alu -9 302 1 1149 334 48 43 chr3 106904797 106905654 -120618924 - L3 LINE CR1 -31 1546 686 771 166 60 7 chr3 106905861 106906012 -120618566 + L1MA5A LINE L1 6073 6231 -66 558 119 0 0 chr3 106906012 106906096 -120618482 + AluSg/x SINE Alu 218 301 -8 323 310 5 27 chr3 106906097 106906284 -120618294 + L1M1 LINE L1 2989 3171 -4394 519 207 88 60 chr3 106906304 106906521 -120618057 + L1ME LINE L1 4623 4845 -1301 414 167 14 0 chr3 106906532 106906604 -120617974 - FLAM SINE Alu -17 126 54 1558 249 62 7 chr3 106906636 106907464 -120617114 + L1ME LINE L1 4857 5731 -435 840 335 37 6 chr3 106907464 106907819 -120616759 + L1PA12 LINE L1 2 367 -7214 4163 210 27 36 chr3 106908484 106909855 -120614723 + L1PA12 LINE L1 2182 3558 -4026 2409 160 53 94 chr3 106910003 106910183 -120614395 + L1MC1 LINE L1 5254 5440 -893 2098 104 3 7 chr3 106910183 106910471 -120614107 - AluSx SINE Alu -24 288 2 2409 160 53 94 chr3 106910471 106911027 -120613551 + L1MC1 LINE L1 5440 5960 -373 5421 208 71 5 chr3 106911311 106913309 -120611269 - L1PBa LINE L1 -4479 2384 6 23 92 0 0 chr3 106913460 106913525 -120611053 + AT_rich Low_complexity Low_complexity 1 65 0 249 354 28 11 chr3 106913647 106913825 -120610753 - L1M4 LINE L1 -3316 2830 2650 545 231 107 71 chr3 106914211 106914266 -120610312 - MLT1H LTR MaLR -244 305 253 2891 16 0 0 chr3 106914266 106914583 -120609995 + AluYb8 SINE Alu 1 317 -1 545 231 107 71 chr3 106914583 106914752 -120609826 - MLT1H LTR MaLR -296 253 73 2591 187 121 2 chr3 106914804 106915343 -120609235 + LTR26 LTR ERV1 1 603 0 23 0 0 0 chr3 106915436 106915459 -120609119 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3 106915659 106915687 -120608891 + AT_rich Low_complexity Low_complexity 1 28 0 343 347 83 29 chr3 106915962 106916204 -120608374 + MIR SINE MIR 8 262 0 6880 65 26 8 chr3 106916298 106917179 -120607399 + MER11D LTR ERVK 1 897 0 6784 69 0 0 chr3 106917179 106918039 -120606539 + HERVK11D LTR ERVK 1 860 -6892 * 14587 37 1 1 chr3 106918034 106919773 -120604805 + HERVK11D LTR ERVK 3066 4804 -2948 4398 58 11 2 chr3 106919763 106920313 -120604265 + HERVK11D LTR ERVK 5368 5922 -1830 * 2199 122 3 0 chr3 106920313 106920666 -120603912 - L1P LINE L1 -2661 3800 3447 6637 133 15 7 chr3 106920668 106921679 -120602899 + THE1A-int LTR MaLR 560 1578 -2 2264 138 6 8 chr3 106921681 106922037 -120602541 + THE1A LTR MaLR 1 355 0 3570 198 6 37 chr3 106922039 106923843 -120600735 - L1P3 LINE L1 -4454 2007 80 1315 193 75 98 chr3 106923844 106924232 -120600346 + MLT2B1 LTR ERVL 142 520 0 24 32 0 0 chr3 106924797 106924828 -120599750 + AT_rich Low_complexity Low_complexity 1 31 0 23 33 0 0 chr3 106925026 106925056 -120599522 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr3 106925275 106925304 -120599274 + AT_rich Low_complexity Low_complexity 1 29 0 1049 314 54 11 chr3 106926070 106926442 -120598136 + MER74A LTR ERVL 120 507 -51 1939 200 115 28 chr3 106926971 106927453 -120597125 - Charlie1 DNA MER1_type 0 2761 2214 705 226 44 13 chr3 106927453 106927612 -120596966 + FRAM SINE Alu 2 165 -1 1939 200 115 28 chr3 106927612 106927738 -120596840 - Charlie1 DNA MER1_type -547 2214 2100 1677 192 119 28 chr3 106928873 106929301 -120595277 + MLT1C LTR MaLR 1 467 0 1857 226 11 44 chr3 106929835 106930357 -120594221 + MLT1D LTR MaLR 1 505 0 1975 152 52 64 chr3 106931475 106931772 -120592806 - L1MB3 LINE L1 -57 6126 5827 2222 128 0 0 chr3 106931772 106932084 -120592494 - AluSx SINE Alu 0 312 1 1975 152 52 64 chr3 106932084 106932122 -120592456 - L1MB3 LINE L1 -356 5827 5790 300 111 0 0 chr3 106932122 106932167 -120592411 + (CA)n Simple_repeat Simple_repeat 2 46 0 1975 152 52 64 chr3 106932167 106932311 -120592267 - L1MB3 LINE L1 -393 5790 5652 231 208 31 46 chr3 106932786 106932916 -120591662 + (TATAA)n Simple_repeat Simple_repeat 3 130 0 782 179 7 0 chr3 106934434 106934574 -120590004 - FLAM_C SINE Alu 0 143 3 331 213 120 48 chr3 106935337 106935524 -120589054 + MER34 LTR ERV1 434 537 -5 185 328 0 16 chr3 106935634 106935698 -120588880 - MIR SINE MIR -50 212 150 38 61 0 0 chr3 106935698 106935764 -120588814 + AT_rich Low_complexity Low_complexity 1 66 0 1734 147 3 27 chr3 106935952 106936306 -120588272 - MER4A LTR ERV1 0 664 261 306 139 361 0 chr3 106936306 106936378 -120588200 - MER4A LTR ERV1 -566 98 1 457 291 55 31 chr3 106936428 106936682 -120587896 - MIR SINE MIR -1 261 2 181 219 31 78 chr3 106937212 106937276 -120587302 + L3 LINE CR1 1239 1299 -278 202 322 46 35 chr3 106937406 106937493 -120587085 + L2 LINE L2 3175 3262 -51 290 378 62 35 chr3 106938332 106938546 -120586032 + L2 LINE L2 1941 2148 -1166 2065 206 34 0 chr3 106938546 106938964 -120585614 + MSTB1 LTR MaLR 1 432 0 290 378 62 35 chr3 106938964 106939183 -120585395 + L2 LINE L2 2148 2386 -928 23 97 0 0 chr3 106939995 106940067 -120584511 + AT_rich Low_complexity Low_complexity 1 72 0 734 232 54 5 chr3 106940325 106940510 -120584068 + L1M4 LINE L1 4046 4239 -1907 2129 122 7 3 chr3 106940631 106940935 -120583643 + AluSx SINE Alu 1 305 -7 187 192 27 0 chr3 106940935 106941008 -120583570 + (TA)n Simple_repeat Simple_repeat 1 75 0 303 121 76 15 chr3 106941016 106941082 -120583496 - L1MCa LINE L1 -4362 2064 1995 189 89 67 0 chr3 106941085 106941130 -120583448 + (TA)n Simple_repeat Simple_repeat 2 49 0 21 0 0 0 chr3 106941179 106941200 -120583378 + AT_rich Low_complexity Low_complexity 1 21 0 2109 113 3 10 chr3 106943946 106944247 -120580331 + AluSx SINE Alu 5 303 -9 8437 191 26 29 chr3 106944882 106946266 -120578312 + L1PA10 LINE L1 10 1397 -5086 2379 65 0 26 chr3 106946266 106946576 -120578002 + AluY SINE Alu 1 302 -9 8437 191 26 29 chr3 106946576 106948466 -120576112 + L1PA10 LINE L1 1397 3292 -3191 2421 97 8 25 chr3 106948466 106948826 -120575752 + THE1A LTR MaLR 2 355 0 8437 191 26 29 chr3 106948826 106951813 -120572765 + L1PA10 LINE L1 3292 6480 -3 308 280 11 11 chr3 106952066 106952193 -120572385 + GA-rich Low_complexity Low_complexity 1 127 0 333 306 205 4 chr3 106952387 106952616 -120571962 + L1MC/D LINE L1 5496 5770 -2038 810 238 0 0 chr3 106952672 106952861 -120571717 - L1 LINE L1 -1249 4897 4709 33 73 0 0 chr3 106953111 106953179 -120571399 + AT_rich Low_complexity Low_complexity 1 68 0 2241 98 0 0 chr3 106953198 106953485 -120571093 - AluY SINE Alu -15 296 10 297 0 0 0 chr3 106953610 106953643 -120570935 + (TG)n Simple_repeat Simple_repeat 2 34 0 898 218 12 0 chr3 106953916 106954086 -120570492 + MSTD LTR MaLR 1 172 -224 5210 166 16 25 chr3 106954090 106955622 -120568956 + L1PB3 LINE L1 4624 6152 -2 25 0 0 0 chr3 106955634 106955659 -120568919 + AT_rich Low_complexity Low_complexity 1 25 0 856 233 47 22 chr3 106955735 106955760 -120568818 + MSTD LTR MaLR 185 208 -188 195 42 0 0 chr3 106955760 106955784 -120568794 + (TC)n Simple_repeat Simple_repeat 1 24 0 856 233 47 22 chr3 106955784 106956005 -120568573 + MSTD LTR MaLR 208 396 0 8813 177 20 21 chr3 106956369 106959137 -120565441 + L1MA4A LINE L1 3527 6294 -9 253 366 34 99 chr3 106959147 106959562 -120565016 + L2 LINE L2 2879 3266 -6 2071 173 0 24 chr3 106959738 106960108 -120564470 - MLT1A1 LTR MaLR -4 361 1 2014 144 3 0 chr3 106961109 106961407 -120563171 - AluSq SINE Alu -14 299 1 231 395 18 9 chr3 106961645 106961754 -120562824 - L2 LINE L2 -5 3308 3199 590 211 10 27 chr3 106961757 106961934 -120562644 - L1MB8 LINE L1 -255 5923 5770 311 333 24 24 chr3 106961936 106962101 -120562477 - ERVL LTR ERVL -815 4949 4785 493 141 0 0 chr3 106962126 106962211 -120562367 - L1PA13 LINE L1 -3 6160 6076 1220 350 93 29 chr3 106962355 106963588 -120560990 - ERVL LTR ERVL -1115 4649 3338 394 318 87 16 chr3 106963610 106963852 -120560726 - LTR16A1 LTR ERVL -31 426 168 226 345 0 0 chr3 106964165 106964252 -120560326 - LTR16A1 LTR ERVL -60 397 311 264 59 0 0 chr3 106964528 106964562 -120560016 + (A)n Simple_repeat Simple_repeat 1 34 0 333 0 0 0 chr3 106965153 106965190 -120559388 + (TG)n Simple_repeat Simple_repeat 1 37 0 322 292 109 64 chr3 106966538 106966746 -120557832 - HAL1b LINE L1 -1 1347 1150 2258 71 0 0 chr3 106966746 106967026 -120557552 + AluY SINE Alu 1 280 -31 921 62 0 0 chr3 106966913 106967028 -120557550 + AluY SINE Alu 168 312 0 222 0 0 33 chr3 106967028 106967058 -120557520 + (CAAAA)n Simple_repeat Simple_repeat 2 80 0 322 292 109 64 chr3 106967058 106967223 -120557355 - HAL1b LINE L1 -198 1150 954 292 341 0 11 chr3 106967352 106967443 -120557135 + L2 LINE L2 3223 3312 -1 387 288 62 14 chr3 106967709 106967921 -120556657 + L1MCa LINE L1 33 204 -5841 763 250 110 21 chr3 106967941 106968473 -120556105 + L1MCa LINE L1 1596 2369 -4376 * 3952 209 39 33 chr3 106968470 106968522 -120556056 + L1MC3 LINE L1 6753 6803 -982 1866 170 27 3 chr3 106968522 106968858 -120555720 - MER2 DNA MER2_type 0 344 1 3952 209 39 33 chr3 106968858 106969826 -120554752 + L1MC3 LINE L1 6803 7779 -6 29 28 0 0 chr3 106970123 106970159 -120554419 + AT_rich Low_complexity Low_complexity 1 36 0 27 100 0 0 chr3 106970194 106970284 -120554294 + AT_rich Low_complexity Low_complexity 1 90 0 318 228 81 13 chr3 106970402 106970551 -120554027 - L1M4 LINE L1 -866 5280 5122 226 224 70 6 chr3 106971126 106971282 -120553296 + (TA)n Simple_repeat Simple_repeat 2 167 0 267 267 11 44 chr3 106971344 106971434 -120553144 - L2 LINE L2 0 3313 3227 350 307 116 22 chr3 106971444 106971669 -120552909 - L1M4 LINE L1 -2327 3819 3574 1486 207 52 97 chr3 106972535 106972933 -120551645 - MLT1C LTR MaLR 0 467 93 2268 113 0 0 chr3 106972933 106973242 -120551336 - AluY SINE Alu -2 309 1 1486 207 52 97 chr3 106973242 106973327 -120551251 - MLT1C LTR MaLR -374 93 6 34 79 0 0 chr3 106974027 106974103 -120550475 + AT_rich Low_complexity Low_complexity 1 76 0 551 149 0 0 chr3 106974154 106974248 -120550330 - L1MB2 LINE L1 -9 6162 6069 2295 98 0 3 chr3 106974357 106974654 -120549924 + AluSc SINE Alu 1 296 -13 1672 141 4 22 chr3 106975039 106975346 -120549232 - AluJb SINE Alu 0 312 21 303 368 96 17 chr3 106975427 106975666 -120548912 - L3 LINE CR1 -304 1273 1016 1931 145 3 3 chr3 106975838 106976141 -120548437 + L1PB3 LINE L1 5845 6147 -7 24 0 0 0 chr3 106976342 106976366 -120548212 + AT_rich Low_complexity Low_complexity 1 24 0 276 154 0 0 chr3 106976435 106976487 -120548091 + (CA)n Simple_repeat Simple_repeat 2 53 0 233 318 0 24 chr3 106977310 106977395 -120547183 + MIR SINE MIR 58 140 -122 245 286 48 0 chr3 106978666 106978729 -120545849 + MER102b DNA MER1_type 1 66 -275 323 280 67 53 chr3 106978825 106978975 -120545603 + MER102b DNA MER1_type 188 339 -2 373 366 22 0 chr3 106980522 106980656 -120543922 + L2 LINE L2 31 167 -3147 229 278 105 53 chr3 106980677 106980810 -120543768 + MER5A DNA MER1_type 2 141 -48 597 278 43 0 chr3 106980816 106980978 -120543600 + L2 LINE L2 186 354 -2960 1870 256 24 8 chr3 106981234 106981745 -120542833 - L1MB8 LINE L1 -9 6169 5651 292 58 39 39 chr3 106982082 106982134 -120542444 - L1PA10 LINE L1 0 6174 6122 25 0 0 0 chr3 106983241 106983266 -120541312 + AT_rich Low_complexity Low_complexity 1 25 0 225 0 0 0 chr3 106984551 106984576 -120540002 + (T)n Simple_repeat Simple_repeat 1 25 0 597 293 90 71 chr3 106984802 106985325 -120539253 - LTR67 LTR ERVL -9 548 16 1100 299 79 6 chr3 106986178 106986660 -120537918 + L1ME3A LINE L1 5652 6168 -2 295 356 23 15 chr3 106987227 106987359 -120537219 + L2 LINE L2 3181 3313 0 2165 247 45 52 chr3 106987375 106988205 -120536373 - MER99 DNA DNA -1 827 4 24 32 0 0 chr3 106988249 106988280 -120536298 + AT_rich Low_complexity Low_complexity 1 31 0 2599 185 105 5 chr3 106988681 106989243 -120535335 - MER73 LTR ERVL -3 641 24 183 80 0 0 chr3 106989525 106989550 -120535028 + (TTCA)n Simple_repeat Simple_repeat 4 28 0 910 328 113 26 chr3 106989642 106990209 -120534369 - L2 LINE L2 -380 2934 2319 201 263 0 50 chr3 106990566 106990646 -120533932 + T-rich Low_complexity Low_complexity 1 76 0 41 36 0 0 chr3 106990841 106990896 -120533682 + AT_rich Low_complexity Low_complexity 1 55 0 31 0 0 0 chr3 106991090 106991121 -120533457 + AT_rich Low_complexity Low_complexity 1 31 0 282 245 64 32 chr3 106992718 106992812 -120531766 + MLT1J2 LTR MaLR 115 211 -239 498 277 61 53 chr3 106994315 106994659 -120529919 + MLT1J2 LTR MaLR 37 377 -32 318 26 0 0 chr3 106994689 106994728 -120529850 + (GA)n Simple_repeat Simple_repeat 2 40 0 2200 128 45 11 chr3 106995334 106995686 -120528892 + THE1B LTR MaLR 1 364 0 254 301 0 41 chr3 106995876 106995949 -120528629 + L2 LINE L2 3244 3313 0 1983 129 44 30 chr3 106996900 106997265 -120527313 + THE1C LTR MaLR 4 373 -2 1588 157 17 40 chr3 106998264 106998564 -120526014 + AluJo SINE Alu 1 293 -19 24 0 0 0 chr3 106998741 106998765 -120525813 + AT_rich Low_complexity Low_complexity 1 24 0 2734 96 74 12 chr3 106998838 106999255 -120525323 - MLT2A1 LTR ERVL -1 443 1 20377 91 4 2 chr3 106999255 107001945 -120522633 - HERVL-A1 LTR ERVL 0 5654 2961 507 265 39 51 chr3 107003212 107003446 -120521132 - MLT1A2 LTR MaLR -11 363 133 460 196 0 49 chr3 107003501 107003603 -120520975 - MLT1A2 LTR MaLR -196 169 73 224 278 67 122 chr3 107003764 107004102 -120520476 - L2 LINE L2 -535 2779 2467 2318 92 0 10 chr3 107004102 107004406 -120520172 + AluSg1 SINE Alu 1 301 -8 224 278 67 122 chr3 107004406 107004484 -120520094 - L2 LINE L2 -847 2467 2386 269 257 29 0 chr3 107004487 107004557 -120520021 + LTR50 LTR ERVL 96 167 -628 307 333 99 47 chr3 107004573 107004975 -120519603 - L2 LINE L2 -980 2334 1912 282 318 116 30 chr3 107005539 107005772 -120518806 + L3 LINE CR1 1078 1330 -247 673 287 38 10 chr3 107006202 107006411 -120518167 + MLT1I LTR MaLR 1 215 -194 280 176 27 54 chr3 107007880 107007954 -120516624 + LTR33A LTR ERVL 452 523 0 191 315 102 28 chr3 107008343 107008451 -120516127 + L3 LINE CR1 1414 1529 -48 1987 124 3 0 chr3 107009006 107009296 -120515282 + AluSp SINE Alu 1 291 -22 225 132 0 0 chr3 107009296 107009334 -120515244 + (TA)n Simple_repeat Simple_repeat 1 38 0 262 171 0 0 chr3 107009892 107009933 -120514645 - MLT2D LTR ERVL 0 464 424 270 56 0 0 chr3 107009933 107009969 -120514609 + (TG)n Simple_repeat Simple_repeat 1 36 0 2136 180 13 5 chr3 107010153 107010548 -120514030 - MLT2D LTR ERVL -14 400 3 240 360 124 7 chr3 107010898 107011051 -120513527 - L2 LINE L2 0 3272 3102 1346 167 6 0 chr3 107011152 107011472 -120513106 - L1P LINE L1 -741 5425 5104 4006 160 23 15 chr3 107011472 107012215 -120512363 + L1PA16 LINE L1 5414 6163 -3 499 293 186 0 chr3 107012219 107012407 -120512171 - L2 LINE L2 -256 3057 2835 2549 58 0 0 chr3 107012441 107012752 -120511826 + AluY SINE Alu 1 311 0 22 0 0 0 chr3 107013978 107014000 -120510578 + AT_rich Low_complexity Low_complexity 1 22 0 437 287 35 7 chr3 107014060 107014203 -120510375 + MER58C DNA MER1_type 1 147 -68 1854 155 26 68 chr3 107014203 107014584 -120509994 + MSTC LTR MaLR 1 365 -63 32024 34 13 1 chr3 107014589 107020616 -120503962 + L1PA2 LINE L1 2 6155 0 377 137 68 0 chr3 107020622 107020695 -120503883 + MSTC LTR MaLR 351 428 0 298 180 0 16 chr3 107020696 107020757 -120503821 + MER58 DNA MER1_type 2359 2418 -2 1168 161 0 19 chr3 107021659 107021870 -120502708 + AluJo SINE Alu 87 293 -19 227 281 52 0 chr3 107021881 107021977 -120502601 + MIR SINE MIR 136 236 -26 234 220 0 0 chr3 107022314 107022373 -120502205 + T-rich Low_complexity Low_complexity 1 59 0 935 103 0 0 chr3 107022538 107022664 -120501914 - AluSq/x SINE Alu -186 126 1 2062 174 60 19 chr3 107023506 107023938 -120500640 + L1MC2 LINE L1 5886 6335 -9 32 57 0 0 chr3 107025060 107025113 -120499465 + AT_rich Low_complexity Low_complexity 1 53 0 346 366 137 27 chr3 107025617 107026019 -120498559 - LTR16A LTR ERVL -4 446 1 436 306 89 0 chr3 107026631 107026757 -120497821 - HERV16 LTR ERVL -3916 1080 936 204 40 0 0 chr3 107026757 107026782 -120497796 + (TG)n Simple_repeat Simple_repeat 2 26 0 436 306 89 0 chr3 107026782 107026812 -120497766 - HERV16 LTR ERVL -4060 936 910 928 329 71 34 chr3 107026915 107027536 -120497042 - HERV16 LTR ERVL -4232 764 121 1517 245 60 18 chr3 107027770 107028153 -120496425 - MLT1D LTR MaLR 0 505 107 1703 266 50 24 chr3 107029424 107029928 -120494650 + LTR40a LTR ERVL 1 517 -2 1603 194 102 8 chr3 107030138 107030774 -120493804 - LTR48 LTR ERV1 -55 732 3 22 0 0 0 chr3 107030956 107030978 -120493600 + AT_rich Low_complexity Low_complexity 1 22 0 9186 177 11 12 chr3 107031005 107032753 -120491825 - L1PB1 LINE L1 -2 6865 5119 666 0 0 0 chr3 107032753 107032827 -120491751 + (TATTG)n Simple_repeat Simple_repeat 2 75 0 9186 177 11 12 chr3 107032827 107033831 -120490747 - L1PB1 LINE L1 -1748 5119 4116 8057 178 81 6 chr3 107033830 107036156 -120488422 - L1PB1 LINE L1 -4112 2751 105 * 240 237 17 0 chr3 107036164 107036223 -120488355 - MER5B DNA MER1_type -118 60 1 717 290 0 5 chr3 107036301 107036501 -120488077 - MER3 DNA MER1_type -10 199 1 336 48 0 0 chr3 107036659 107036701 -120487877 + (GA)n Simple_repeat Simple_repeat 1 42 0 7376 195 91 96 chr3 107037820 107038633 -120485945 + L1MC1 LINE L1 26 842 -5584 870 143 20 14 chr3 107038633 107038780 -120485798 + FRAM SINE Alu 8 155 -21 7376 195 91 96 chr3 107038780 107040570 -120484008 + L1MC1 LINE L1 842 2756 -3670 281 223 38 83 chr3 107040573 107040730 -120483848 + L1MC1 LINE L1 3063 3212 -3214 5439 197 42 8 chr3 107040737 107042305 -120482273 + L1MC1 LINE L1 4998 6612 -1 27 49 0 0 chr3 107042539 107042580 -120481998 + AT_rich Low_complexity Low_complexity 1 41 0 8528 123 19 1 chr3 107042705 107043968 -120480610 + HSMAR1 DNA Mariner 2 1287 0 1770 249 11 3 chr3 107046162 107046540 -120478038 - MER70A LTR ERVL -2 470 90 758 231 19 0 chr3 107046539 107046695 -120477883 - MER70B LTR ERVL -419 159 1 * 393 263 17 25 chr3 107047544 107047662 -120476916 + MLT1J1 LTR MaLR 6 122 -324 2286 95 3 0 chr3 107051071 107051365 -120473213 + AluSp SINE Alu 1 295 -18 24 0 0 0 chr3 107051625 107051649 -120472929 + AT_rich Low_complexity Low_complexity 1 24 0 701 168 0 38 chr3 107051919 107052050 -120472528 + FLAM_C SINE Alu 1 126 -7 1098 200 38 17 chr3 107052334 107052574 -120472004 - MLT1A1 LTR MaLR -117 248 4 369 272 22 0 chr3 107052787 107052879 -120471699 - MLT2E LTR ERVL -514 114 21 279 294 35 0 chr3 107053494 107053579 -120470999 + L2 LINE L2 3217 3304 -9 269 299 198 18 chr3 107054807 107055024 -120469554 - L3 LINE CR1 -79 1498 1243 468 275 34 27 chr3 107055063 107055212 -120469366 - L2 LINE L2 -1 3271 3122 191 327 27 27 chr3 107055221 107055331 -120469247 - L3 LINE CR1 -399 1178 1069 427 322 41 6 chr3 107055342 107055513 -120469065 + MIR SINE MIR 86 262 0 190 336 248 9 chr3 107055551 107055878 -120468700 - L3 LINE CR1 -575 1002 598 189 0 0 0 chr3 107057054 107057075 -120467503 + (T)n Simple_repeat Simple_repeat 1 21 0 258 345 35 18 chr3 107057204 107057317 -120467261 + L2 LINE L2 2532 2646 -668 210 319 0 77 chr3 107057772 107057863 -120466715 + MIR3 SINE MIR 119 202 -6 22 0 0 0 chr3 107057965 107057987 -120466591 + AT_rich Low_complexity Low_complexity 1 22 0 1136 312 113 9 chr3 107060302 107060744 -120463834 - L2 LINE L2 -1 3312 2825 2784 187 82 24 chr3 107061392 107061980 -120462598 + LTR26E LTR ERV1 1 622 0 3339 41 0 7 chr3 107062087 107062500 -120462078 + L1PA5 LINE L1 5743 6152 -2 293 353 74 68 chr3 107062533 107062898 -120461680 - L2 LINE L2 -76 3196 2830 25 31 0 0 chr3 107062962 107062994 -120461584 + AT_rich Low_complexity Low_complexity 1 32 0 2194 152 58 27 chr3 107063024 107063471 -120461107 + MLT1C LTR MaLR 1 461 -6 268 288 68 41 chr3 107063473 107063619 -120460959 + L3 LINE CR1 740 889 -688 28 61 0 0 chr3 107063715 107063764 -120460814 + AT_rich Low_complexity Low_complexity 1 49 0 7475 27 11 0 chr3 107064083 107065103 -120459475 + L1PA3 LINE L1 5123 6152 -3 318 110 0 137 chr3 107065040 107065113 -120459465 + L1PA10 LINE L1 6106 6168 0 29 28 0 0 chr3 107065180 107065216 -120459362 + AT_rich Low_complexity Low_complexity 1 36 0 1745 272 33 45 chr3 107065381 107065913 -120458665 - L1MEc LINE L1 -3049 3166 2644 1934 146 21 0 chr3 107065913 107066201 -120458377 + AluSx SINE Alu 1 294 -18 1745 272 33 45 chr3 107066201 107066455 -120458123 - L1MEc LINE L1 -3571 2644 2389 3757 168 52 4 chr3 107066455 107067134 -120457444 - MER50 LTR ERV1 -23 711 1 26 0 0 0 chr3 107067210 107067236 -120457342 + AT_rich Low_complexity Low_complexity 1 26 0 722 221 41 16 chr3 107067268 107067512 -120457066 - L1MEc LINE L1 -4027 2369 2120 369 234 78 0 chr3 107067573 107067650 -120456928 - MER5A DNA MER1_type -5 184 102 1591 164 63 3 chr3 107067650 107067937 -120456641 + AluJb SINE Alu 1 304 -8 184 262 64 99 chr3 107067937 107068012 -120456566 + MER5A DNA MER1_type 99 168 -21 25 75 0 0 chr3 107068044 107068097 -120456481 + AT_rich Low_complexity Low_complexity 1 53 0 1501 195 3 32 chr3 107068221 107068529 -120456049 - AluJo SINE Alu -13 299 1 13396 151 27 23 chr3 107068710 107071116 -120453462 - Tigger1 DNA MER2_type 0 2418 2 259 143 0 0 chr3 107071507 107071549 -120453029 - MLT2D LTR ERVL -6 514 473 195 204 0 0 chr3 107071560 107071604 -120452974 + (TA)n Simple_repeat Simple_repeat 1 44 0 658 265 47 33 chr3 107071620 107071975 -120452603 - MLT2D LTR ERVL -19 445 83 792 322 50 55 chr3 107072263 107072667 -120451911 + LTR16A LTR ERVL 22 423 -27 22 35 0 0 chr3 107073911 107073940 -120450638 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr3 107074069 107074095 -120450483 + AT_rich Low_complexity Low_complexity 1 26 0 24 32 0 0 chr3 107076176 107076207 -120448371 + AT_rich Low_complexity Low_complexity 1 31 0 2295 249 68 39 chr3 107076868 107077758 -120446820 - L1ME3A LINE L1 -26 6144 5236 221 192 0 19 chr3 107077758 107077810 -120446768 + (TATATG)n Simple_repeat Simple_repeat 4 54 0 3109 166 77 25 chr3 107078004 107078151 -120446427 + L1MA6 LINE L1 5616 5754 -546 246 32 0 0 chr3 107078151 107078182 -120446396 + (CA)n Simple_repeat Simple_repeat 2 32 0 3109 166 77 25 chr3 107078182 107078684 -120445894 + L1MA6 LINE L1 5754 6299 -1 234 286 65 0 chr3 107078740 107078817 -120445761 - L1ME3A LINE L1 -1165 4981 4900 22 103 0 0 chr3 107078948 107079026 -120445552 + AT_rich Low_complexity Low_complexity 1 78 0 592 270 99 73 chr3 107079075 107079584 -120444994 - LTR50 LTR ERVL -15 508 1 23 0 0 0 chr3 107079880 107079903 -120444675 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr3 107080283 107080318 -120444260 + AT_rich Low_complexity Low_complexity 1 35 0 211 134 81 13 chr3 107131263 107131412 -120393166 + (TA)n Simple_repeat Simple_repeat 2 160 0 30 45 0 0 chr3 107131412 107131456 -120393122 + AT_rich Low_complexity Low_complexity 1 44 0 350 147 16 43 chr3 107131462 107131646 -120392932 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 204 93 37 19 chr3 107131668 107131722 -120392856 + (TATAA)n Simple_repeat Simple_repeat 2 56 0 29 84 0 0 chr3 107132049 107132120 -120392458 + AT_rich Low_complexity Low_complexity 1 71 0 270 262 0 12 chr3 107132592 107132676 -120391902 - HAL1 LINE L1 -868 1639 1557 1206 193 26 0 chr3 107132721 107132985 -120391593 - L1MA8 LINE L1 -15 6276 6006 364 273 45 8 chr3 107133139 107133271 -120391307 + MER3 DNA MER1_type 29 165 -44 1082 228 53 8 chr3 107133288 107133644 -120390934 + MER3 DNA MER1_type 2246 2617 0 239 214 36 129 chr3 107133716 107133856 -120390722 - HAL1 LINE L1 -1159 1348 1222 285 200 22 67 chr3 107136019 107136109 -120388469 + MLT1J LTR MaLR 398 483 -28 185 125 42 42 chr3 107136109 107136157 -120388421 - MER5B DNA MER1_type -127 51 4 2367 81 0 7 chr3 107136359 107136666 -120387912 - AluSg SINE Alu -5 305 1 425 273 186 34 chr3 107140033 107140327 -120384251 - L1MEc LINE L1 -5091 1354 1007 24 0 0 0 chr3 107140421 107140445 -120384133 + AT_rich Low_complexity Low_complexity 1 24 0 212 171 0 0 chr3 107140999 107141034 -120383544 + GA-rich Low_complexity Low_complexity 4 38 0 478 15 45 0 chr3 107141375 107141441 -120383137 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 261 0 0 0 chr3 107141685 107141714 -120382864 + (TG)n Simple_repeat Simple_repeat 1 29 0 430 319 134 30 chr3 107141753 107142179 -120382399 + Charlie8 DNA MER1_type 84 553 -1864 25725 146 17 18 chr3 107142328 107148627 -120375951 - L1PA8A LINE L1 0 6446 85 845 123 84 19 chr3 107148628 107148782 -120375796 - MLT2A2 LTR ERVL -79 374 211 331 341 11 0 chr3 107148920 107149011 -120375567 + LTR67 LTR ERVL 110 201 -356 221 402 28 6 chr3 107149462 107149641 -120374937 - L2 LINE L2 -2281 1033 851 1108 151 0 11 chr3 107149649 107149828 -120374750 + AluSg/x SINE Alu 129 305 -7 480 247 99 29 chr3 107149867 107150110 -120374468 - L1M4c LINE L1 -4434 2129 1870 392 271 213 8 chr3 107150221 107150510 -120374068 - L1M4c LINE L1 -4696 1688 1349 320 43 22 0 chr3 107150653 107150699 -120373879 + (TG)n Simple_repeat Simple_repeat 2 48 0 972 218 55 106 chr3 107151392 107151788 -120372790 + MLT2D LTR ERVL 1 375 -39 387 0 0 0 chr3 107151788 107151831 -120372747 + (CA)n Simple_repeat Simple_repeat 2 44 0 972 218 55 106 chr3 107151831 107151870 -120372708 + MLT2D LTR ERVL 375 414 0 25 31 0 0 chr3 107152838 107152870 -120371708 + AT_rich Low_complexity Low_complexity 1 32 0 206 346 39 0 chr3 107153155 107153259 -120371319 - MIR SINE MIR -75 187 80 218 293 40 13 chr3 107154818 107154893 -120369685 - MER5B DNA MER1_type -51 127 51 219 310 17 0 chr3 107154972 107155030 -120369548 + L2 LINE L2 3207 3265 -48 1953 156 21 0 chr3 107155259 107155599 -120368979 + L1PA16 LINE L1 5811 6157 -9 185 342 31 87 chr3 107155956 107156278 -120368300 - L2 LINE L2 -160 3112 2809 23 0 0 0 chr3 107158584 107158607 -120365971 + AT_rich Low_complexity Low_complexity 1 23 0 555 168 8 15 chr3 107158718 107158849 -120365729 + CT-rich Low_complexity Low_complexity 3 132 0 222 37 0 0 chr3 107159340 107159367 -120365211 + (TG)n Simple_repeat Simple_repeat 1 27 0 216 158 0 0 chr3 107159440 107159478 -120365100 + (TA)n Simple_repeat Simple_repeat 2 39 0 1899 157 0 0 chr3 107159533 107159838 -120364740 - AluSq SINE Alu -8 305 1 2125 112 3 10 chr3 107161053 107161366 -120363212 - AluSq SINE Alu -2 311 1 863 208 19 11 chr3 107162336 107162600 -120361978 - MLT1A1 LTR MaLR -8 357 1 23 0 0 0 chr3 107162673 107162696 -120361882 + AT_rich Low_complexity Low_complexity 1 23 0 290 250 65 0 chr3 107162706 107162798 -120361780 - MER67C LTR ERV1 -3 707 610 1578 169 67 0 chr3 107162803 107163087 -120361491 + MER7A DNA MER2_type 36 336 -10 2895 197 50 5 chr3 107163097 107163681 -120360897 - MER67C LTR ERV1 -100 610 1 21 0 0 0 chr3 107163837 107163858 -120360720 + AT_rich Low_complexity Low_complexity 1 21 0 263 247 86 0 chr3 107164386 107164479 -120360099 - MLT1H LTR MaLR -443 106 6 27 29 0 0 chr3 107164898 107164932 -120359646 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr3 107165284 107165306 -120359272 + AT_rich Low_complexity Low_complexity 1 22 0 3763 209 65 47 chr3 107165636 107167320 -120357258 - L1M3 LINE L1 -571 5597 3755 1978 322 101 5 chr3 107167327 107168197 -120356381 + L2 LINE L2 1841 2794 -520 237 278 186 0 chr3 107168197 107168294 -120356284 - LTR33 LTR ERVL 0 521 407 2196 113 0 6 chr3 107168311 107168622 -120355956 + AluSg1 SINE Alu 1 309 0 490 298 44 62 chr3 107168644 107168869 -120355709 - LTR16A LTR ERVL -2 448 228 290 390 45 12 chr3 107169010 107169256 -120355322 - LTR33 LTR ERVL -236 285 32 486 293 133 4 chr3 107169360 107169609 -120354969 - LTR33A LTR ERVL -14 509 229 407 346 55 23 chr3 107169854 107170071 -120354507 + MIR SINE MIR 39 262 0 299 256 173 54 chr3 107170192 107170360 -120354218 + MER5A DNA MER1_type 2 189 0 21 0 0 0 chr3 107170861 107170882 -120353696 + AT_rich Low_complexity Low_complexity 1 21 0 2144 202 24 7 chr3 107173477 107173902 -120350676 - MSTB1 LTR MaLR 0 432 1 195 42 0 0 chr3 107174274 107174298 -120350280 + (TAAAA)n Simple_repeat Simple_repeat 4 27 0 432 287 24 0 chr3 107174887 107175054 -120349524 + L1PBa LINE L1 114 284 -6579 * 3135 194 218 15 chr3 107175043 107176062 -120348516 + L1PBa LINE L1 901 2126 -4737 2156 162 65 19 chr3 107176164 107176478 -120348100 - L1PA15-16 LINE L1 -4819 2030 1732 235 47 0 47 chr3 107176478 107176521 -120348057 + (TTA)n Simple_repeat Simple_repeat 2 42 0 2156 162 65 19 chr3 107176521 107176830 -120347748 - L1PA15-16 LINE L1 -5117 1732 1326 4405 64 34 8 chr3 107176832 107177841 -120346737 - MER11A LTR ERVK 0 1266 1 6068 212 24 8 chr3 107177841 107179013 -120345565 - L1PA15-16 LINE L1 -5520 1329 139 6556 193 35 3 chr3 107179645 107180492 -120344086 - L1PA13 LINE L1 -1 6162 5343 324 0 0 0 chr3 107180492 107180528 -120344050 + (TG)n Simple_repeat Simple_repeat 1 36 0 6556 193 35 3 chr3 107180528 107181843 -120342735 - L1PA13 LINE L1 -820 5343 3943 48 18 0 0 chr3 107182129 107182184 -120342394 + AT_rich Low_complexity Low_complexity 1 55 0 37 39 0 0 chr3 107182595 107182646 -120341932 + AT_rich Low_complexity Low_complexity 1 51 0 2314 84 0 3 chr3 107184459 107184768 -120339810 - AluY SINE Alu -3 308 1 22 0 0 0 chr3 107184951 107184973 -120339605 + AT_rich Low_complexity Low_complexity 1 22 0 1153 192 33 65 chr3 107185431 107185805 -120338773 + MER67D LTR ERV1 1 403 -242 32 43 0 0 chr3 107186063 107186109 -120338469 + AT_rich Low_complexity Low_complexity 1 46 0 306 368 18 31 chr3 107186291 107186454 -120338124 - MIR3 SINE MIR -18 190 30 7194 204 49 30 chr3 107187585 107189238 -120335340 - MER52A LTR ERV1 0 1755 1 261 83 0 0 chr3 107189959 107189995 -120334583 + (T)n Simple_repeat Simple_repeat 1 36 0 1073 225 60 136 chr3 107190219 107190771 -120333807 - MER67D LTR ERV1 -4 510 1 2728 162 37 30 chr3 107191446 107192037 -120332541 + LTR49 LTR ERV1 1 595 0 493 330 30 30 chr3 107192314 107192544 -120332034 + LTR38 LTR ERV1 138 367 -189 341 354 40 15 chr3 107192544 107192742 -120331836 + PABL_B-int LTR ERV1 6658 6860 -262 979 248 47 99 chr3 107193061 107193504 -120331074 + LTR38 LTR ERV1 137 556 0 1688 181 7 3 chr3 107194278 107194576 -120330002 + AluJb SINE Alu 1 299 -13 2307 156 34 48 chr3 107194969 107195443 -120329135 + LTR24 LTR ERV1 1 467 0 1233 249 20 27 chr3 107195443 107195943 -120328635 + LTR24-int LTR ERV1 1 636 -4487 404 229 0 29 chr3 107196276 107196381 -120328197 + LTR24-int LTR ERV1 645 746 -4377 198 91 0 0 chr3 107196542 107196575 -120328003 + (A)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr3 107197711 107197732 -120326846 + AT_rich Low_complexity Low_complexity 1 21 0 29 84 0 0 chr3 107198085 107198156 -120326422 + AT_rich Low_complexity Low_complexity 1 71 0 5083 65 1 0 chr3 107198243 107198891 -120325687 - L1PA7 LINE L1 -11 6143 5495 21 0 0 0 chr3 107199040 107199061 -120325517 + AT_rich Low_complexity Low_complexity 1 21 0 307 247 0 34 chr3 107199391 107199480 -120325098 + LTR24-int LTR ERV1 3336 3421 -4978 2751 120 21 53 chr3 107200132 107200600 -120323978 + MLT2A2 LTR ERVL 1 453 0 11679 98 20 25 chr3 107200600 107202323 -120322255 + HERVL-A2 LTR ERVL 1 1715 -3939 4964 88 9 3 chr3 107202327 107203005 -120321573 + HERVL-A2 LTR ERVL 4965 5646 -8 3008 119 16 2 chr3 107203008 107203455 -120321123 + MLT2A2 LTR ERVL 1 453 0 350 367 73 42 chr3 107203763 107204172 -120320406 + LTR24-int LTR ERV1 3420 3841 -2960 326 354 34 44 chr3 107204853 107205237 -120319341 + LTR24-int LTR ERV1 2177 2556 -2091 289 210 49 25 chr3 107205385 107205466 -120319112 + LTR24-int LTR ERV1 4994 5076 -1725 192 77 0 0 chr3 107205496 107205522 -120319056 + (A)n Simple_repeat Simple_repeat 1 26 0 643 348 7 14 chr3 107206489 107206782 -120317796 + LTR24-int LTR ERV1 6395 6685 -437 573 222 0 0 chr3 107207155 107207272 -120317306 + LTR24-int LTR ERV1 5007 5123 0 2328 193 15 28 chr3 107207272 107207705 -120316873 + LTR24 LTR ERV1 1 429 -38 2036 121 7 0 chr3 107207705 107208010 -120316568 - AluSx SINE Alu -5 307 1 2328 193 15 28 chr3 107208010 107208047 -120316531 + LTR24 LTR ERV1 429 465 -2 234 105 0 0 chr3 107208452 107208490 -120316088 + (TC)n Simple_repeat Simple_repeat 1 38 0 738 233 0 6 chr3 107209136 107209295 -120315283 - MLT1D LTR MaLR -1 504 347 367 222 16 113 chr3 107209313 107209566 -120315012 - MLT1E2 LTR MaLR -281 224 2 2244 72 3 10 chr3 107210225 107210530 -120314048 + AluY SINE Alu 1 303 -8 212 310 198 9 chr3 107210570 107210686 -120313892 - MIR SINE MIR -122 140 3 340 288 29 44 chr3 107211694 107211899 -120312679 - L1ME LINE L1 -331 5790 5589 21 57 0 0 chr3 107212203 107212238 -120312340 + AT_rich Low_complexity Low_complexity 1 35 0 245 315 67 48 chr3 107214349 107214514 -120310064 + MIR SINE MIR 30 197 -65 241 323 50 20 chr3 107217846 107217945 -120306633 + MIR3 SINE MIR 82 183 -25 303 28 0 0 chr3 107218127 107218163 -120306415 + (TG)n Simple_repeat Simple_repeat 1 36 0 344 100 0 0 chr3 107218787 107218841 -120305737 + Alu SINE Alu 242 287 -15 1900 141 0 18 chr3 107219129 107219413 -120305165 - AluSx SINE Alu -33 279 1 249 33 0 0 chr3 107220446 107220476 -120304102 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 23 33 0 0 chr3 107221650 107221680 -120302898 + AT_rich Low_complexity Low_complexity 1 30 0 2223 77 3 3 chr3 107221688 107221987 -120302591 - AluY SINE Alu -12 299 1 24 32 0 0 chr3 107222401 107222432 -120302146 + AT_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr3 107223208 107223228 -120301350 + (TC)n Simple_repeat Simple_repeat 1 20 0 2870 171 61 18 chr3 107223366 107223986 -120300592 + MER39B LTR ERV1 5 651 -2 321 26 0 0 chr3 107223999 107224037 -120300541 + (TA)n Simple_repeat Simple_repeat 1 38 0 27 0 0 0 chr3 107224161 107224188 -120300390 + AT_rich Low_complexity Low_complexity 1 27 0 2267 98 0 0 chr3 107224625 107224922 -120299656 + AluSx SINE Alu 3 299 -13 612 387 63 24 chr3 107226779 107227285 -120297293 - L3 LINE CR1 -6 1571 1046 231 259 167 28 chr3 107227310 107227418 -120297160 - L2 LINE L2 0 3313 3191 401 318 69 2 chr3 107227457 107227626 -120296952 - MER63A DNA MER1_type 0 210 27 2308 57 33 0 chr3 107228472 107228772 -120295806 + AluY SINE Alu 1 310 -1 998 252 222 22 chr3 107231813 107232218 -120292360 - MLT1D LTR MaLR -13 492 7 1660 321 113 37 chr3 107232376 107232879 -120291699 - L2 LINE L2 -2 3311 2848 1644 154 15 4 chr3 107232879 107233139 -120291439 - AluSq SINE Alu -50 263 1 1660 321 113 37 chr3 107233139 107234041 -120290537 - L2 LINE L2 -465 2848 1792 655 246 80 20 chr3 107234309 107234508 -120290070 - MIR SINE MIR -21 241 31 1183 309 41 30 chr3 107234525 107234587 -120289991 - L2 LINE L2 -1666 1648 1588 1086 198 30 118 chr3 107234587 107234987 -120289591 + MLT1A1 LTR MaLR 1 365 0 1183 309 41 30 chr3 107234987 107235384 -120289194 - L2 LINE L2 -1726 1588 1184 255 229 94 42 chr3 107236425 107236521 -120288057 + L1MEd LINE L1 136 236 -5969 1356 235 39 97 chr3 107236528 107236826 -120287752 + L1MEd LINE L1 1898 2212 -4003 1554 201 21 0 chr3 107236826 107237139 -120287439 + AluJo SINE Alu 10 312 0 1356 235 39 97 chr3 107237139 107237846 -120286732 + L1MEd LINE L1 2212 2803 -3412 2555 23 0 13 chr3 107239388 107239695 -120284883 + AluY SINE Alu 1 303 -8 223 284 84 100 chr3 107239763 107239953 -120284625 + MIR3 SINE MIR 17 203 -5 208 207 0 37 chr3 107240199 107240281 -120284297 + (TA)n Simple_repeat Simple_repeat 1 79 0 29 47 0 0 chr3 107240598 107240641 -120283937 + AT_rich Low_complexity Low_complexity 1 43 0 892 156 276 0 chr3 107240888 107241087 -120283491 + L1MCa LINE L1 1914 2167 -4259 1558 133 10 84 chr3 107241087 107241263 -120283315 - Tigger1 DNA MER2_type 0 2418 2230 1838 136 0 4 chr3 107241263 107241542 -120283036 + AluSq SINE Alu 1 278 -35 925 67 0 0 chr3 107241543 107241662 -120282916 + L1PA5 LINE L1 6025 6143 -11 1558 133 10 84 chr3 107241662 107241792 -120282786 - Tigger1 DNA MER2_type -187 2231 2133 1330 169 169 0 chr3 107242026 107242281 -120282297 - AluSx SINE Alu -4 298 1 200 125 50 0 chr3 107243500 107243540 -120281038 + (TAGA)n Simple_repeat Simple_repeat 4 45 0 310 305 0 0 chr3 107244761 107244843 -120279735 + L2 LINE L2 3186 3267 -5 24 32 0 0 chr3 107244871 107244902 -120279676 + AT_rich Low_complexity Low_complexity 1 31 0 357 97 105 7 chr3 107244912 107245189 -120279389 + (TA)n Simple_repeat Simple_repeat 1 304 0 270 139 33 33 chr3 107245190 107245341 -120279237 + (TATAA)n Simple_repeat Simple_repeat 1 151 0 352 200 33 33 chr3 107245360 107245540 -120279038 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 315 226 28 28 chr3 107245551 107245728 -120278850 + (TTATA)n Simple_repeat Simple_repeat 1 177 0 394 214 31 21 chr3 107245739 107246030 -120278548 + (TATAA)n Simple_repeat Simple_repeat 1 294 0 2453 49 0 0 chr3 107246031 107246337 -120278241 - L1P LINE L1 -3915 2231 1926 6815 37 5 54 chr3 107246337 107247591 -120276987 + L1PA4 LINE L1 4937 6144 -11 369 0 0 0 chr3 107247695 107247736 -120276842 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1449 171 33 25 chr3 107247825 107248183 -120276395 + Tigger5 DNA MER2_type 66 2323 0 23 54 0 0 chr3 107248212 107248249 -120276329 + AT_rich Low_complexity Low_complexity 1 37 0 704 240 111 22 chr3 107248302 107248673 -120275905 + Zaphod DNA AcHobo 3620 4023 -8 649 203 14 0 chr3 107248673 107248811 -120275767 + L1 LINE L1 4190 4329 -1817 7108 224 22 21 chr3 107250510 107251747 -120272831 - L1 LINE L1 -1817 4329 3094 8847 43 3 1 chr3 107251747 107252814 -120271764 + MER11C LTR ERVK 1 1069 -2 7108 224 22 21 chr3 107252814 107252983 -120271595 - L1 LINE L1 -3052 3094 2927 2087 118 10 0 chr3 107252983 107253272 -120271306 - AluY SINE Alu -19 292 1 7108 224 22 21 chr3 107253272 107253740 -120270838 - L1 LINE L1 -3219 2927 2453 5696 156 14 11 chr3 107253740 107254704 -120269874 + Tigger1 DNA MER2_type 1383 2349 -69 259 250 14 0 chr3 107254731 107254803 -120269775 + L1MC4 LINE L1 6629 6701 -1341 240 239 23 11 chr3 107254821 107254909 -120269669 - L1MC4 LINE L1 -1340 6702 6614 246 161 32 81 chr3 107255295 107255357 -120269221 - L2 LINE L2 -1274 2040 1982 1865 149 3 32 chr3 107255816 107256132 -120268446 - AluSx SINE Alu -5 307 1 38 85 0 0 chr3 107256175 107256269 -120268309 + AT_rich Low_complexity Low_complexity 1 94 0 27 29 0 0 chr3 107256748 107256782 -120267796 + AT_rich Low_complexity Low_complexity 1 34 0 726 258 16 0 chr3 107257779 107257965 -120266613 - MER5A DNA MER1_type 0 189 1 912 295 81 18 chr3 107258365 107258823 -120265755 + L1MCb LINE L1 3 489 -5556 2074 226 23 0 chr3 107258849 107259319 -120265259 + L1MC3 LINE L1 5483 5963 -1822 402 156 26 13 chr3 107259329 107259406 -120265172 - MLT1A1 LTR MaLR -287 78 1 34 24 0 0 chr3 107260429 107260470 -120264108 + AT_rich Low_complexity Low_complexity 1 41 0 2256 114 26 0 chr3 107260470 107260821 -120263757 - L1PB2 LINE L1 -3 6864 6505 403 183 61 4 chr3 107260842 107261448 -120263130 + (TA)n Simple_repeat Simple_repeat 1 640 0 2811 101 7 10 chr3 107261448 107261854 -120262724 - L1PB2 LINE L1 -360 6507 6103 13026 194 57 7 chr3 107261875 107262398 -120262180 - L1PB2 LINE L1 -741 6126 5631 213 65 0 0 chr3 107262398 107262429 -120262149 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 13026 194 57 7 chr3 107262429 107262859 -120261719 - L1PB2 LINE L1 -1236 5631 5224 275 0 0 28 chr3 107262859 107262895 -120261683 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 13026 194 57 7 chr3 107262895 107268667 -120255911 - L1PB2 LINE L1 -1643 5224 1 2475 0 0 0 chr3 107268675 107268943 -120255635 - AluYa5 SINE Alu -5 306 39 33 0 0 0 chr3 107268998 107269031 -120255547 + AT_rich Low_complexity Low_complexity 1 33 0 278 325 32 0 chr3 107269438 107269561 -120255017 - LTR67 LTR ERVL -3 554 428 1597 130 121 128 chr3 107269612 107270043 -120254535 - MSTA LTR MaLR 0 428 1 466 325 73 5 chr3 107270622 107270813 -120253765 + MIR SINE MIR 58 261 -1 2533 70 0 6 chr3 107270859 107271171 -120253407 + AluSg SINE Alu 1 310 0 21 57 0 0 chr3 107271914 107271949 -120252629 + AT_rich Low_complexity Low_complexity 1 35 0 192 360 35 0 chr3 107273315 107273401 -120251177 - L2 LINE L2 0 3313 3225 229 307 23 11 chr3 107273655 107273743 -120250835 + CT-rich Low_complexity Low_complexity 3 91 0 25 0 0 0 chr3 107276350 107276375 -120248203 + AT_rich Low_complexity Low_complexity 1 25 0 21 82 0 0 chr3 107276467 107276516 -120248062 + AT_rich Low_complexity Low_complexity 1 49 0 2193 107 0 13 chr3 107280762 107281070 -120243508 + AluSc SINE Alu 1 304 -5 342 272 143 42 chr3 107281544 107281761 -120242817 + L2 LINE L2 2198 2436 -878 1515 72 5 0 chr3 107282193 107282386 -120242192 + AluY SINE Alu 1 194 -117 880 215 61 35 chr3 107282577 107282838 -120241740 + L1ME1 LINE L1 4446 4713 -1433 201 74 0 0 chr3 107282910 107282937 -120241641 + (A)n Simple_repeat Simple_repeat 1 27 0 1517 271 75 11 chr3 107283000 107283121 -120241457 + L1ME1 LINE L1 4702 4814 -1352 1775 252 76 16 chr3 107283121 107283729 -120240849 + LTR48B LTR ERV1 1 644 0 1517 271 75 11 chr3 107283729 107284624 -120239954 + L1ME1 LINE L1 4814 5806 -360 1807 212 8 11 chr3 107284624 107284982 -120239596 - MLT1A1 LTR MaLR 0 365 9 294 224 113 64 chr3 107284985 107285233 -120239345 + L1ME1 LINE L1 5801 6099 -67 213 65 0 0 chr3 107285238 107285269 -120239309 + (CA)n Simple_repeat Simple_repeat 2 32 0 1529 264 53 66 chr3 107285853 107286440 -120238138 + MLT1E1 LTR MaLR 73 651 -3 853 251 70 74 chr3 107286550 107286996 -120237582 - LTR37B LTR ERV1 -10 458 15 955 240 65 0 chr3 107289132 107289378 -120235200 - L1P LINE L1 -851 5295 5034 2016 60 48 4 chr3 107289378 107289674 -120234904 - AluY SINE Alu 0 308 1 5547 160 56 13 chr3 107289795 107291780 -120232798 + L1MA7 LINE L1 1907 3967 -2895 2740 181 38 54 chr3 107291784 107292256 -120232322 + L1MA7 LINE L1 6341 6800 -207 2136 116 0 3 chr3 107292256 107292550 -120232028 - AluSq SINE Alu -20 293 1 2740 181 38 54 chr3 107292550 107292744 -120231834 + L1MA7 LINE L1 6800 6996 -11 1924 114 6 43 chr3 107293285 107293318 -120231260 + L1PA12 LINE L1 5857 5890 -278 1974 183 55 16 chr3 107293318 107293755 -120230823 + MSTB2 LTR MaLR 1 454 -3 1924 114 6 43 chr3 107293755 107294045 -120230533 + L1PA12 LINE L1 5890 6168 0 2177 139 116 10 chr3 107294499 107294886 -120229692 + MSTA LTR MaLR 1 428 0 311 287 0 11 chr3 107294886 107294973 -120229605 - L1MC4 LINE L1 -1343 6699 6614 225 280 0 0 chr3 107295055 107295105 -120229473 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 22 35 0 0 chr3 107296589 107296618 -120227960 + AT_rich Low_complexity Low_complexity 1 29 0 5621 225 47 36 chr3 107296948 107298993 -120225585 - L1MC3 LINE L1 -757 5389 4672 6896 63 0 37 chr3 107299479 107301159 -120223419 - L1PA5 LINE L1 0 6154 4502 23 54 0 0 chr3 107302349 107302386 -120222192 + AT_rich Low_complexity Low_complexity 1 37 0 2280 227 48 58 chr3 107303466 107304161 -120220417 + MER76 LTR ERV 1 688 0 199 238 0 0 chr3 107304475 107304517 -120220061 - L2 LINE L2 -576 2738 2697 262 288 50 0 chr3 107305856 107305936 -120218642 + L2 LINE L2 2933 3016 -256 721 307 40 20 chr3 107306056 107306307 -120218271 - MIR SINE MIR 0 262 7 181 384 35 0 chr3 107306381 107306467 -120218111 + L2 LINE L2 3184 3272 0 203 244 0 0 chr3 107307596 107307641 -120216937 + (TG)n Simple_repeat Simple_repeat 2 46 0 411 328 92 51 chr3 107307756 107308287 -120216291 - L2 LINE L2 -561 2753 2201 705 289 9 27 chr3 107308812 107309037 -120215541 - LTR16B LTR ERVL -3 461 241 28 29 0 0 chr3 107309178 107309213 -120215365 + AT_rich Low_complexity Low_complexity 1 35 0 258 32 0 0 chr3 107309580 107309611 -120214967 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1996 117 3 3 chr3 107309614 107309904 -120214674 - AluSx SINE Alu -22 290 1 1350 254 30 37 chr3 107310646 107311052 -120213526 - MLT1C LTR MaLR -4 463 61 36 23 0 0 chr3 107311069 107311112 -120213466 + AT_rich Low_complexity Low_complexity 1 43 0 636 323 96 13 chr3 107311541 107311999 -120212579 - LTR33 LTR ERVL -1 520 25 902 253 108 24 chr3 107312559 107312855 -120211723 - L3 LINE CR1 -2 1575 1255 994 223 18 0 chr3 107313171 107313400 -120211178 + L1PA16 LINE L1 5934 6166 0 1934 247 81 16 chr3 107313410 107313579 -120210999 + L1MB7 LINE L1 4212 4369 -1777 6772 65 0 2 chr3 107313579 107314919 -120209659 - L1PA7 LINE L1 -2 6152 4807 1934 247 81 16 chr3 107314919 107315437 -120209141 + L1MB7 LINE L1 4369 4944 -1202 570 225 44 89 chr3 107315423 107315855 -120208723 + L1MB7 LINE L1 5757 6177 -7 * 27 0 0 0 chr3 107316677 107316704 -120207874 + AT_rich Low_complexity Low_complexity 1 27 0 31 26 0 0 chr3 107316850 107316888 -120207690 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr3 107318506 107318529 -120206049 + AT_rich Low_complexity Low_complexity 1 23 0 261 0 0 0 chr3 107318631 107318660 -120205918 + (CA)n Simple_repeat Simple_repeat 2 30 0 325 356 58 10 chr3 107318791 107318999 -120205579 - L1MEc LINE L1 -5999 397 180 1824 141 61 55 chr3 107319117 107319163 -120205415 + MER47A DNA MER2_type 2 46 -2277 1999 134 11 0 chr3 107319163 107319446 -120205132 - AluSg SINE Alu -24 286 1 1824 141 61 55 chr3 107319446 107319762 -120204816 + MER47A DNA MER2_type 46 366 0 22 70 0 0 chr3 107319909 107319952 -120204626 + AT_rich Low_complexity Low_complexity 1 43 0 349 316 137 5 chr3 107320213 107320403 -120204175 - MIR SINE MIR -28 234 20 2352 125 22 11 chr3 107320862 107321222 -120203356 - THE1B LTR MaLR 0 364 1 294 169 14 42 chr3 107321717 107321740 -120202838 - MER46A DNA MER2_type -71 165 145 280 207 0 0 chr3 107321740 107321798 -120202780 + Tigger4(Zombi) DNA MER2_type 1 58 -2673 1202 184 14 0 chr3 107321811 107322034 -120202544 + Tigger4(Zombi) DNA MER2_type 2506 2731 0 795 241 12 6 chr3 107323499 107323665 -120200913 + FAM SINE Alu 1 167 -8 23 0 0 0 chr3 107324193 107324216 -120200362 + AT_rich Low_complexity Low_complexity 1 23 0 21 71 0 0 chr3 107325327 107325369 -120199209 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr3 107326494 107326519 -120198059 + AT_rich Low_complexity Low_complexity 1 25 0 1171 228 81 98 chr3 107326665 107327248 -120197330 - MER74B LTR ERVL -10 612 40 316 347 28 14 chr3 107327330 107327474 -120197104 - MIR SINE MIR -115 147 2 21 0 0 0 chr3 107327768 107327789 -120196789 + AT_rich Low_complexity Low_complexity 1 21 0 418 322 148 14 chr3 107328135 107328418 -120196160 - MLT1I LTR MaLR 0 409 89 28 48 0 0 chr3 107328527 107328569 -120196009 + AT_rich Low_complexity Low_complexity 1 42 0 446 356 43 11 chr3 107328606 107328794 -120195784 + Zaphod DNA AcHobo 167 360 -3671 23853 40 5 2 chr3 107328807 107331792 -120192786 - L1PA4 LINE L1 -1227 4919 1926 6815 37 5 54 chr3 107331792 107333046 -120191532 + L1PA4 LINE L1 4937 6144 -11 369 0 0 0 chr3 107333150 107333191 -120191387 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 1449 171 33 25 chr3 107333280 107333638 -120190940 + Tigger5 DNA MER2_type 66 2323 0 23 54 0 0 chr3 107333667 107333704 -120190874 + AT_rich Low_complexity Low_complexity 1 37 0 704 240 111 22 chr3 107333757 107334128 -120190450 + Zaphod DNA AcHobo 3620 4023 -8 649 203 14 0 chr3 107334128 107334266 -120190312 + L1 LINE L1 4190 4329 -1817 7108 224 22 21 chr3 107335965 107337202 -120187376 - L1 LINE L1 -1817 4329 3094 8847 43 3 1 chr3 107337202 107338269 -120186309 + MER11C LTR ERVK 1 1069 -2 7108 224 22 21 chr3 107338269 107338438 -120186140 - L1 LINE L1 -3052 3094 2927 2087 118 10 0 chr3 107338438 107338727 -120185851 - AluY SINE Alu -19 292 1 7108 224 22 21 chr3 107338727 107339195 -120185383 - L1 LINE L1 -3219 2927 2453 5696 156 14 11 chr3 107339195 107340159 -120184419 + Tigger1 DNA MER2_type 1383 2349 -69 259 250 14 0 chr3 107340186 107340258 -120184320 + L1MC4 LINE L1 6629 6701 -1341 240 239 23 11 chr3 107340276 107340364 -120184214 - L1MC4 LINE L1 -1340 6702 6614 246 161 32 81 chr3 107340750 107340812 -120183766 - L2 LINE L2 -1274 2040 1982 1878 146 3 32 chr3 107341271 107341587 -120182991 - AluSx SINE Alu -5 307 1 38 85 0 0 chr3 107341630 107341724 -120182854 + AT_rich Low_complexity Low_complexity 1 94 0 27 29 0 0 chr3 107342203 107342237 -120182341 + AT_rich Low_complexity Low_complexity 1 34 0 726 258 16 0 chr3 107343235 107343421 -120181157 - MER5A DNA MER1_type 0 189 1 912 295 81 18 chr3 107343821 107344279 -120180299 + L1MCb LINE L1 3 489 -5556 2026 230 23 0 chr3 107344305 107344775 -120179803 + L1MC3 LINE L1 5483 5963 -1822 402 156 26 13 chr3 107344785 107344862 -120179716 - MLT1A1 LTR MaLR -287 78 1 34 24 0 0 chr3 107345885 107345926 -120178652 + AT_rich Low_complexity Low_complexity 1 41 0 2256 114 26 0 chr3 107345926 107346277 -120178301 - L1PB2 LINE L1 -3 6148 5789 403 173 53 6 chr3 107346298 107346641 -120177937 + (TA)n Simple_repeat Simple_repeat 1 359 0 9982 43 2 0 chr3 107346787 107348047 -120176531 - L1P LINE L1 -3016 3130 1869 348 43 0 0 chr3 107348148 107348195 -120176383 - AluY SINE Alu -253 47 1 1894 155 10 3 chr3 107348195 107348499 -120176079 - AluSq SINE Alu -7 306 1 535 260 79 12 chr3 107348500 107348754 -120175824 - L1MCa LINE L1 -5341 1223 953 2160 288 43 37 chr3 107348791 107349650 -120174928 - L1MCa LINE L1 -5178 867 4 929 83 0 0 chr3 107349964 107350085 -120174493 + AluY SINE Alu 1 121 -190 4711 67 22 0 chr3 107350185 107350936 -120173642 - L1PA7 LINE L1 -287 5867 5106 526 78 0 0 chr3 107350934 107351011 -120173567 + L1PA7 LINE L1 5008 5084 -1062 * 1516 203 21 0 chr3 107351186 107351476 -120173102 - AluJb SINE Alu -16 296 1 24 0 0 0 chr3 107351593 107351617 -120172961 + AT_rich Low_complexity Low_complexity 1 24 0 1680 171 0 0 chr3 107352397 107352671 -120171907 + AluSx SINE Alu 1 274 -38 26 0 0 0 chr3 107352733 107352759 -120171819 + AT_rich Low_complexity Low_complexity 1 26 0 205 245 19 0 chr3 107352786 107352839 -120171739 + (TG)n Simple_repeat Simple_repeat 2 55 0 888 92 14 14 chr3 107353280 107353422 -120171156 + THE1C-int LTR MaLR 1439 1580 0 688 110 10 0 chr3 107353529 107353629 -120170949 + THE1C LTR MaLR 28 128 -247 1626 232 15 35 chr3 107354438 107354945 -120169633 + L1ME LINE L1 5208 5703 -481 462 36 0 0 chr3 107355411 107355467 -120169111 + (TA)n Simple_repeat Simple_repeat 2 57 0 355 265 0 20 chr3 107355583 107355681 -120168897 + CT-rich Low_complexity Low_complexity 3 98 0 554 126 11 0 chr3 107356019 107356106 -120168472 - AluSg/x SINE Alu -17 295 208 24 32 0 0 chr3 107356784 107356815 -120167763 + AT_rich Low_complexity Low_complexity 1 31 0 29 0 0 0 chr3 107356868 107356897 -120167681 + AT_rich Low_complexity Low_complexity 1 29 0 728 267 83 30 chr3 107357277 107357830 -120166748 - LTR36 LTR ERV1 -1 610 1 252 281 62 0 chr3 107358960 107359088 -120165490 + L1ME LINE L1 5759 5894 -227 803 240 43 66 chr3 107359257 107359676 -120164902 + MLT1A1 LTR MaLR 2 365 0 708 177 0 43 chr3 107360249 107360390 -120164188 - L1PB4 LINE L1 -1 6155 6021 737 185 25 51 chr3 107360390 107360406 -120164172 - L1PB4 LINE L1 -2 6154 6003 295 181 43 112 chr3 107361348 107361383 -120163195 + LTR52 LTR ERVL 13 49 -372 1703 158 10 3 chr3 107361383 107361674 -120162904 - AluJb SINE Alu -17 295 3 295 181 43 112 chr3 107361674 107361754 -120162824 + LTR52 LTR ERVL 49 120 -301 15561 40 0 2 chr3 107362139 107364618 -120159960 - L1PA3 LINE L1 -215 5940 3466 13127 60 1 4 chr3 107364718 107366400 -120158178 - L1PA3 LINE L1 -4463 1683 8 2869 212 5 0 chr3 107366405 107367005 -120157573 - L1 LINE L1 -1116 5030 4428 3505 173 15 19 chr3 107367014 107367036 -120157542 + L1PA16 LINE L1 5310 5331 -835 1876 155 7 0 chr3 107367036 107367326 -120157252 + AluSx SINE Alu 1 292 -20 3505 173 15 19 chr3 107367326 107367487 -120157091 + L1PA16 LINE L1 5331 5491 -675 233 29 29 0 chr3 107367487 107367521 -120157057 + (CA)n Simple_repeat Simple_repeat 2 36 0 3505 173 15 19 chr3 107367521 107368049 -120156529 + L1PA16 LINE L1 5491 6022 -144 366 116 14 0 chr3 107368073 107368142 -120156436 + L1PA16 LINE L1 6097 6166 0 1190 274 18 20 chr3 107368192 107368593 -120155985 + L1MB1 LINE L1 2199 2598 -3548 311 186 0 0 chr3 107368655 107368714 -120155864 + Tigger5 DNA MER2_type 2265 2323 0 240 213 16 33 chr3 107368778 107368839 -120155739 + Tigger5 DNA MER2_type 2264 2323 0 7373 258 56 30 chr3 107368839 107369141 -120155437 + L1MB1 LINE L1 2624 2916 -3230 6723 42 0 0 chr3 107369141 107369957 -120154621 + L1PA4 LINE L1 5338 6153 -2 7373 258 56 30 chr3 107369957 107372050 -120152528 + L1MB1 LINE L1 2916 5083 -1063 2926 178 72 47 chr3 107372054 107372761 -120151817 + L1MB1 LINE L1 5443 6167 -1 21 0 0 0 chr3 107372761 107372782 -120151796 + AT_rich Low_complexity Low_complexity 1 21 0 1301 238 11 50 chr3 107373056 107373435 -120151143 - MLT1D LTR MaLR -141 364 1 1291 212 77 37 chr3 107373435 107373812 -120150766 + L1MB8 LINE L1 5787 6178 0 1121 279 64 44 chr3 107373817 107374630 -120149948 + L1ME1 LINE L1 2914 3742 -2404 2839 268 89 23 chr3 107374648 107375396 -120149182 + L1ME1 LINE L1 3821 4518 -1648 2348 77 0 0 chr3 107375396 107375707 -120148871 + AluYa5 SINE Alu 1 311 0 2839 268 89 23 chr3 107375707 107376952 -120147626 + L1ME1 LINE L1 4518 5944 -222 1494 197 46 46 chr3 107376974 107377364 -120147214 + MLT1B LTR MaLR 1 390 0 745 246 38 9 chr3 107377384 107377633 -120146945 + L1ME3A LINE L1 5738 5993 -177 1986 117 3 3 chr3 107377672 107377955 -120146623 + AluSp SINE Alu 1 283 -30 246 318 0 11 chr3 107378154 107378242 -120146336 - L1ME3A LINE L1 -6 6164 6078 504 86 0 0 chr3 107378573 107378643 -120145935 + (TA)n Simple_repeat Simple_repeat 2 71 0 274 232 0 0 chr3 107379806 107379862 -120144716 - L1M3f LINE L1 -4720 608 553 3447 160 36 2 chr3 107379862 107380475 -120144103 + L1MA4 LINE L1 5387 6020 -280 364 146 49 0 chr3 107380487 107380569 -120144009 + L1MB3 LINE L1 6096 6181 -2 222 191 0 0 chr3 107381562 107381604 -120142974 + (TG)n Simple_repeat Simple_repeat 1 42 0 21 0 0 0 chr3 107382204 107382225 -120142353 + AT_rich Low_complexity Low_complexity 1 21 0 511 283 90 0 chr3 107383263 107383486 -120141092 + MLT1F1 LTR MaLR 325 567 0 269 232 161 9 chr3 107383799 107383911 -120140667 - L2 LINE L2 0 3313 3185 212 349 0 0 chr3 107384049 107384115 -120140463 + CT-rich Low_complexity Low_complexity 2 67 0 2641 230 56 30 chr3 107384313 107385137 -120139441 - L1MB8 LINE L1 -129 6049 5208 243 0 0 0 chr3 107385153 107385180 -120139398 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 609 289 0 0 chr3 107385180 107385329 -120139249 - FRAM SINE Alu -17 149 1 2318 240 38 74 chr3 107385331 107386253 -120138325 - L1MB8 LINE L1 -1495 4651 3763 696 291 17 0 chr3 107386437 107386609 -120137969 - MIR SINE MIR -8 254 80 293 385 87 22 chr3 107386989 107387220 -120137358 - L2 LINE L2 -2833 481 236 22 0 0 0 chr3 107388072 107388094 -120136484 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr3 107388568 107388610 -120135968 + AT_rich Low_complexity Low_complexity 1 42 0 4615 165 28 36 chr3 107389069 107390009 -120134569 - L1PB4 LINE L1 -2 6154 5221 393 78 0 223 chr3 107390281 107390384 -120134194 + MADE1 DNA Mariner 1 80 0 2067 272 18 0 chr3 107390669 107391176 -120133402 + LTR53 LTR ERVL 1 516 -3 295 340 29 10 chr3 107391325 107391428 -120133150 - L2 LINE L2 -1 3312 3208 374 156 0 219 chr3 107392206 107392444 -120132134 - MER53 DNA DNA 0 189 4 22 70 0 0 chr3 107392610 107392653 -120131925 + AT_rich Low_complexity Low_complexity 1 43 0 490 231 19 0 chr3 107393140 107393244 -120131334 - LTR39 LTR ERV1 -81 702 597 1088 173 15 132 chr3 107393319 107393661 -120130917 - LTR39 LTR ERV1 -481 302 1 332 310 26 17 chr3 107394053 107394169 -120130409 - L1MC4 LINE L1 -170 7872 7756 1648 192 11 27 chr3 107394413 107394778 -120129800 + L1PA16 LINE L1 5808 6166 0 4261 16 0 4 chr3 107395311 107395807 -120128771 + L1PA2 LINE L1 5662 6155 0 46 19 0 0 chr3 107395979 107396032 -120128546 + AT_rich Low_complexity Low_complexity 1 53 0 477 286 53 15 chr3 107396743 107397005 -120127573 + L1ME LINE L1 1205 1476 -4920 373 325 64 49 chr3 107397026 107397229 -120127349 + L1ME LINE L1 1579 1784 -4612 1124 291 93 32 chr3 107397324 107397849 -120126729 - MER68 LTR ERV1 0 562 6 372 225 84 49 chr3 107398197 107398339 -120126239 + L1ME LINE L1 2280 2426 -3789 462 252 27 14 chr3 107398442 107398630 -120125948 + L1M4 LINE L1 4406 4604 -1542 3092 173 12 24 chr3 107398765 107399426 -120125152 - L1MA7 LINE L1 -5 6286 5634 554 260 8 0 chr3 107399455 107399582 -120124996 + L1ME3 LINE L1 6000 6127 -35 672 254 127 3 chr3 107400167 107400466 -120124112 + LTR37A LTR ERV1 78 413 -13 21 0 0 0 chr3 107400678 107400699 -120123879 + AT_rich Low_complexity Low_complexity 1 21 0 2308 94 0 0 chr3 107400783 107401080 -120123498 - AluSq SINE Alu -13 300 4 751 291 76 68 chr3 107401269 107402021 -120122557 + L1ME LINE L1 3931 4688 -1527 2042 124 3 7 chr3 107402212 107402511 -120122067 - AluSx SINE Alu -14 298 1 382 275 32 87 chr3 107402803 107403021 -120121557 + L1ME LINE L1 5530 5735 -504 5230 147 96 43 chr3 107403058 107403202 -120121376 - Tigger3(Golem) DNA MER2_type 0 3029 2894 2047 116 51 31 chr3 107403202 107403556 -120121022 + THE1B LTR MaLR 1 361 -3 5230 147 96 43 chr3 107403556 107403619 -120120959 - Tigger3(Golem) DNA MER2_type -135 2894 2836 1522 200 44 4 chr3 107403619 107403894 -120120684 + AluJo SINE Alu 1 286 -26 5230 147 96 43 chr3 107403894 107404516 -120120062 - Tigger3(Golem) DNA MER2_type -193 2836 2123 2865 130 26 0 chr3 107404516 107404976 -120119602 + L1PA14 LINE L1 5685 6156 -5 5230 147 96 43 chr3 107404976 107405257 -120119321 - Tigger3(Golem) DNA MER2_type -906 2123 1858 238 301 182 40 chr3 107405316 107405492 -120119086 - MIR SINE MIR -14 248 48 23 54 0 0 chr3 107405665 107405702 -120118876 + AT_rich Low_complexity Low_complexity 1 37 0 31 44 0 0 chr3 107406155 107406200 -120118378 + AT_rich Low_complexity Low_complexity 1 45 0 2385 72 0 3 chr3 107406356 107406662 -120117916 + AluY SINE Alu 1 305 -6 281 293 73 16 chr3 107406846 107406969 -120117609 + MIR SINE MIR 101 230 -32 333 221 0 0 chr3 107407149 107407253 -120117325 + L1MA7 LINE L1 6178 6281 -10 27 42 0 56 chr3 107407320 107407391 -120117187 + AT_rich Low_complexity Low_complexity 1 67 0 23 33 0 0 chr3 107408318 107408348 -120116230 + AT_rich Low_complexity Low_complexity 1 30 0 1013 154 0 12 chr3 107408809 107408978 -120115600 - AluSg/x SINE Alu -12 300 134 981 245 100 24 chr3 107409407 107409787 -120114791 + L1MCa LINE L1 779 1187 -5239 18609 148 8 11 chr3 107409853 107411631 -120112947 - L1PA10 LINE L1 -10 6158 4376 2216 117 0 3 chr3 107411631 107411930 -120112648 - AluSq SINE Alu -15 298 1 18609 148 8 11 chr3 107411930 107414277 -120110301 - L1PA10 LINE L1 -1792 4376 2049 3847 198 23 6 chr3 107414285 107415071 -120109507 - L1M2c LINE L1 -4740 1721 953 1575 234 34 11 chr3 107415070 107415511 -120109067 - L1M4 LINE L1 -476 5708 5258 * 23 0 0 0 chr3 107416749 107416772 -120107806 + AT_rich Low_complexity Low_complexity 1 23 0 405 320 14 7 chr3 107416855 107417002 -120107576 + LTR16C LTR ERVL 307 454 -37 1092 237 89 33 chr3 107417105 107417409 -120107169 + MLT2D LTR ERVL 1 321 -93 182 143 20 0 chr3 107417478 107417527 -120107051 + (TA)n Simple_repeat Simple_repeat 2 51 0 242 370 44 0 chr3 107417934 107418052 -120106526 + MIR SINE MIR 1 128 -80 225 255 10 41 chr3 107418257 107418355 -120106223 + (CATATA)n Simple_repeat Simple_repeat 2 96 0 1944 135 30 3 chr3 107419078 107419381 -120105197 - AluSp SINE Alu -2 311 1 451 243 108 106 chr3 107419381 107419760 -120104818 + MLT1J LTR MaLR 58 437 -74 1349 183 11 7 chr3 107419780 107420054 -120104524 - L1MC3 LINE L1 -64 7721 7447 2333 197 29 2 chr3 107420054 107420532 -120104046 - L1MC1 LINE L1 -191 6142 5652 472 421 62 46 chr3 107420547 107421046 -120103532 - L1M4 LINE L1 -1898 4248 3742 888 253 119 17 chr3 107421063 107421929 -120102649 - L1MEc LINE L1 -3644 2782 1862 213 39 0 0 chr3 107421930 107421956 -120102622 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 265 274 64 39 chr3 107422002 107422206 -120102372 - L1MEc LINE L1 -4820 1606 1398 467 280 0 34 chr3 107422213 107422388 -120102190 - L1MEc LINE L1 -5180 1246 1078 2519 58 0 3 chr3 107422388 107422700 -120101878 - AluY SINE Alu 0 311 1 1768 178 10 3 chr3 107422700 107423004 -120101574 - AluSq SINE Alu -7 306 1 1260 256 64 36 chr3 107423423 107423945 -120100633 - LTR27 LTR ERV1 -141 495 2 411 319 126 47 chr3 107424458 107424951 -120099627 - L2 LINE L2 -448 2866 2335 2065 205 49 41 chr3 107424959 107425032 -120099546 + MER92B LTR ERV1 1 72 -564 3473 149 76 18 chr3 107425032 107425654 -120098924 - PABL_A LTR ERV1 0 660 3 2065 205 49 41 chr3 107425654 107426135 -120098443 + MER92B LTR ERV1 72 559 -77 220 170 21 21 chr3 107426865 107426912 -120097666 + (CATATA)n Simple_repeat Simple_repeat 3 49 0 258 148 0 0 chr3 107427012 107427066 -120097512 + (TG)n Simple_repeat Simple_repeat 2 55 0 23 54 0 0 chr3 107427975 107428012 -120096566 + AT_rich Low_complexity Low_complexity 1 37 0 4890 180 35 37 chr3 107428499 107428528 -120096050 + L1PA16 LINE L1 4289 4317 -1849 2139 114 0 3 chr3 107428528 107428825 -120095753 + AluSq SINE Alu 1 296 -17 4890 180 35 37 chr3 107428825 107430316 -120094262 + L1PA16 LINE L1 4317 5788 -378 405 0 0 0 chr3 107430316 107430361 -120094217 + (TA)n Simple_repeat Simple_repeat 1 45 0 4890 180 35 37 chr3 107430361 107430731 -120093847 + L1PA16 LINE L1 5788 6157 -9 26 30 0 0 chr3 107430731 107430764 -120093814 + AT_rich Low_complexity Low_complexity 1 33 0 228 257 0 0 chr3 107430832 107430902 -120093676 + GA-rich Low_complexity Low_complexity 4 73 0 904 245 83 30 chr3 107432787 107433215 -120091363 - L1MEc LINE L1 -3671 2755 2336 314 61 20 0 chr3 107433215 107433264 -120091314 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 480 264 35 13 chr3 107433265 107433368 -120091210 - L1MEc LINE L1 -4195 2287 2188 2541 232 10 69 chr3 107433368 107434135 -120090443 + MER72 LTR ERV1 1 722 0 480 264 35 13 chr3 107434135 107434241 -120090337 - L1MEc LINE L1 -4294 2188 2057 443 193 44 18 chr3 107434233 107434347 -120090231 - L1MEc LINE L1 -4757 1669 1553 * 310 250 46 37 chr3 107434657 107434765 -120089813 - MLT1G1 LTR MaLR -216 379 271 448 315 151 33 chr3 107434780 107435085 -120089493 - MLT1G1 LTR MaLR -2 593 253 358 263 45 22 chr3 107435153 107435332 -120089246 - L1M4 LINE L1 -789 5357 5175 * 379 169 212 0 chr3 107435327 107435380 -120089198 - L1MA10 LINE L1 0 6334 6282 354 240 104 32 chr3 107435380 107435534 -120089044 - L1ME1 LINE L1 -69 6097 5933 489 286 173 38 chr3 107435534 107436112 -120088466 - L1M4 LINE L1 -2247 3899 3178 3103 42 3 3 chr3 107436112 107436498 -120088080 + L1PA5 LINE L1 5761 6146 -8 489 286 173 38 chr3 107436498 107436734 -120087844 - L1M4 LINE L1 -2968 3178 2975 454 240 54 87 chr3 107436729 107436971 -120087607 + L1ME1 LINE L1 5761 5994 -172 * 1642 277 75 31 chr3 107437068 107437709 -120086869 - L1ME1 LINE L1 -438 5728 5117 1854 123 53 20 chr3 107437709 107438011 -120086567 - AluSx SINE Alu 0 312 1 1642 277 75 31 chr3 107438011 107438768 -120085810 - L1ME1 LINE L1 -1049 5117 4273 595 206 8 0 chr3 107438797 107438928 -120085650 + L1MC3 LINE L1 6906 7037 -748 * 2668 192 46 5 chr3 107438925 107439493 -120085085 + L1MC2 LINE L1 5312 5902 -442 1088 233 19 103 chr3 107439494 107439918 -120084660 + MLT2B1 LTR ERVL 1 480 -40 342 182 0 0 chr3 107439918 107439984 -120084594 + (TA)n Simple_repeat Simple_repeat 2 67 0 359 335 157 5 chr3 107440351 107440548 -120084030 - MIR SINE MIR -30 232 6 272 253 0 44 chr3 107441002 107441093 -120083485 + (TATATG)n Simple_repeat Simple_repeat 4 90 0 21 82 0 0 chr3 107441125 107441174 -120083404 + AT_rich Low_complexity Low_complexity 1 49 0 185 308 125 0 chr3 107441273 107441377 -120083201 + MIR SINE MIR 82 198 -64 27 0 0 0 chr3 107441843 107441870 -120082708 + AT_rich Low_complexity Low_complexity 1 27 0 260 231 67 77 chr3 107442916 107443020 -120081558 - MIR SINE MIR -8 254 152 635 227 119 16 chr3 107445559 107445753 -120078825 - L1MC3 LINE L1 -3 7782 7569 * 895 197 28 62 chr3 107445741 107446030 -120078548 - L1MC3 LINE L1 -705 7080 6802 524 148 93 9 chr3 107446266 107446374 -120078204 + MLT1C LTR MaLR 65 181 -286 2726 153 28 74 chr3 107446384 107446964 -120077614 - MLT2B3 LTR ERVL 0 554 2 859 257 84 15 chr3 107446965 107447226 -120077352 + MLT1C LTR MaLR 187 465 -2 21 0 0 0 chr3 107447227 107447248 -120077330 + AT_rich Low_complexity Low_complexity 1 21 0 421 343 124 0 chr3 107447339 107447517 -120077061 - MIR SINE MIR -10 252 53 220 227 0 40 chr3 107447594 107447698 -120076880 + CT-rich Low_complexity Low_complexity 1 99 0 236 343 55 7 chr3 107448666 107448812 -120075766 - HAL1 LINE L1 -1932 575 423 365 368 74 15 chr3 107448899 107449168 -120075410 - HAL1 LINE L1 -2218 289 5 329 264 81 52 chr3 107450950 107451124 -120073454 + MIR SINE MIR 72 250 -12 343 250 14 21 chr3 107452810 107452954 -120071624 + L1ME LINE L1 4971 5113 -1033 276 100 0 0 chr3 107453024 107453064 -120071514 + (CA)n Simple_repeat Simple_repeat 2 41 0 451 103 0 15 chr3 107453193 107453261 -120071317 - MSTA-int LTR MaLR -1584 67 1 1602 187 128 31 chr3 107453261 107453651 -120070927 - MSTA LTR MaLR 0 428 1 1531 193 23 20 chr3 107453948 107454319 -120070259 + L1ME LINE L1 5216 5588 -578 29 28 0 0 chr3 107454322 107454358 -120070220 + AT_rich Low_complexity Low_complexity 1 36 0 1667 174 28 3 chr3 107454364 107454652 -120069926 - AluJb SINE Alu -17 295 1 1942 125 0 0 chr3 107454672 107454967 -120069611 - L1PA7 LINE L1 -2 6152 5858 942 225 118 43 chr3 107455209 107455582 -120068996 + MER57A LTR ERV1 3 403 0 1992 147 131 13 chr3 107455800 107456181 -120068397 - MSTA LTR MaLR 0 428 3 7119 170 19 39 chr3 107456191 107457530 -120067048 - MSTA-int LTR MaLR -8 1572 261 495 168 0 0 chr3 107658117 107658236 -119866342 + (TA)n Simple_repeat Simple_repeat 2 120 0 316 264 61 68 chr3 107658881 107659029 -119865549 + L1MC/D LINE L1 3313 3459 -2687 803 284 149 11 chr3 107659055 107659888 -119864690 + L1MC/D LINE L1 3528 4475 -1671 725 246 19 27 chr3 107659882 107660142 -119864436 - L1MEc LINE L1 -5525 871 614 * 1784 258 46 37 chr3 107660243 107661259 -119863319 + L1MC/D LINE L1 4574 5593 -749 300 242 0 145 chr3 107661363 107661487 -119863091 + L1MCa LINE L1 1123 1228 -5198 5932 107 16 2 chr3 107661494 107662883 -119861695 - L1PA10 LINE L1 -10 6158 4757 1212 80 0 6 chr3 107662984 107663146 -119861432 + AluYa5 SINE Alu 148 308 -3 26 30 0 0 chr3 107663178 107663211 -119861367 + AT_rich Low_complexity Low_complexity 1 33 0 1425 131 0 0 chr3 107663992 107664191 -119860387 - AluSg/x SINE Alu -15 297 99 438 78 0 0 chr3 107664767 107664831 -119859747 + L1PA6 LINE L1 6090 6153 -1 21 0 0 0 chr3 107664831 107664852 -119859726 + AT_rich Low_complexity Low_complexity 1 21 0 46 19 0 0 chr3 107665233 107665286 -119859292 + AT_rich Low_complexity Low_complexity 1 53 0 477 286 53 15 chr3 107665997 107666259 -119858319 + L1MCa LINE L1 1416 1687 -4920 373 325 64 49 chr3 107666280 107666483 -119858095 + L1MCa LINE L1 1790 1995 -4612 1155 289 93 32 chr3 107666578 107667103 -119857475 - MER68 LTR ERV1 0 562 6 372 225 84 49 chr3 107667451 107667593 -119856985 + L1MCa LINE L1 2491 2637 -3789 462 237 100 56 chr3 107667696 107667928 -119856650 + L1M4 LINE L1 4406 4648 -1498 246 150 33 0 chr3 107668123 107668183 -119856395 - L1MA7 LINE L1 -5 6286 6225 11365 159 6 18 chr3 107668285 107668574 -119856004 - L1P LINE L1 -1488 4658 4367 2216 117 0 3 chr3 107668574 107668873 -119855705 - AluSq SINE Alu -15 298 1 11365 159 6 18 chr3 107668873 107670647 -119853931 - L1P LINE L1 -1779 4367 2619 189 0 0 0 chr3 107670778 107670799 -119853779 + (T)n Simple_repeat Simple_repeat 1 21 0 24 32 0 0 chr3 107674309 107674340 -119850238 + AT_rich Low_complexity Low_complexity 1 31 0 1276 187 45 0 chr3 107676071 107676339 -119848239 - L1MB1 LINE L1 -1 6167 5888 3028 17 0 0 chr3 107676442 107676788 -119847790 - L1PA2 LINE L1 -148 6007 5662 1648 192 11 27 chr3 107677321 107677686 -119846892 - L1PA16 LINE L1 0 6166 5808 332 310 26 17 chr3 107677930 107678046 -119846532 + L1MC4 LINE L1 7756 7872 -170 1088 173 15 132 chr3 107678438 107678780 -119845798 + LTR39 LTR ERV1 1 302 -481 855 246 11 11 chr3 107678855 107679042 -119845536 + LTR39 LTR ERV1 597 783 0 22 70 0 0 chr3 107679410 107679453 -119845125 + AT_rich Low_complexity Low_complexity 1 43 0 374 156 0 219 chr3 107679619 107679857 -119844721 + MER53 DNA DNA 4 189 0 1942 270 73 20 chr3 107680162 107680301 -119844277 + L1ME1 LINE L1 4490 4620 -1546 2250 90 0 0 chr3 107680301 107680612 -119843966 + AluYa5 SINE Alu 1 311 0 1942 270 73 20 chr3 107680612 107681856 -119842722 + L1ME1 LINE L1 4620 5944 -222 1494 197 46 46 chr3 107681878 107682268 -119842310 + MLT1B LTR MaLR 1 390 0 745 246 38 9 chr3 107682288 107682537 -119842041 + L1ME3 LINE L1 5738 5993 -177 1986 117 3 3 chr3 107682576 107682859 -119841719 + AluSp SINE Alu 1 283 -30 246 318 0 11 chr3 107683058 107683146 -119841432 - L1ME3A LINE L1 -6 6164 6078 504 86 0 0 chr3 107683477 107683547 -119841031 + (TA)n Simple_repeat Simple_repeat 2 71 0 462 36 0 0 chr3 107684607 107684663 -119839915 + (TA)n Simple_repeat Simple_repeat 2 57 0 355 265 0 20 chr3 107684779 107684877 -119839701 + CT-rich Low_complexity Low_complexity 3 98 0 554 126 11 0 chr3 107685215 107685302 -119839276 - AluSg/x SINE Alu -17 295 208 339 190 20 10 chr3 107687096 107687196 -119837382 + L1MA8 LINE L1 6187 6287 -4 24 32 0 0 chr3 107687518 107687549 -119837029 + AT_rich Low_complexity Low_complexity 1 31 0 200 33 0 33 chr3 107689251 107689281 -119835297 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 1911 219 85 2 chr3 107689374 107689822 -119834756 + MER31A LTR ERV1 1 485 0 3030 174 9 28 chr3 107689961 107690600 -119833978 - L1MA7 LINE L1 -31 6260 5634 554 260 8 0 chr3 107690629 107690756 -119833822 + L1ME3 LINE L1 6000 6127 -35 672 254 127 3 chr3 107691341 107691640 -119832938 + LTR37A LTR ERV1 78 413 -13 21 0 0 0 chr3 107691852 107691873 -119832705 + AT_rich Low_complexity Low_complexity 1 21 0 2308 94 0 0 chr3 107691957 107692254 -119832324 - AluSq SINE Alu -13 300 4 232 259 76 108 chr3 107692443 107693292 -119831286 + L1ME LINE L1 3862 4678 -1468 2207 104 3 3 chr3 107693292 107693591 -119830987 - AluSx SINE Alu -13 299 1 232 259 76 108 chr3 107693591 107693716 -119830862 + L1ME LINE L1 4678 4805 -1341 382 275 32 87 chr3 107693883 107694101 -119830477 + L1ME LINE L1 5461 5666 -504 5230 147 96 43 chr3 107694138 107694282 -119830296 - Tigger3(Golem) DNA MER2_type 0 3029 2894 2047 116 51 31 chr3 107694282 107694636 -119829942 + THE1B LTR MaLR 1 361 -3 5230 147 96 43 chr3 107694636 107694699 -119829879 - Tigger3(Golem) DNA MER2_type -135 2894 2836 1522 200 44 4 chr3 107694699 107694974 -119829604 + AluJo SINE Alu 1 286 -26 5230 147 96 43 chr3 107694974 107695596 -119828982 - Tigger3(Golem) DNA MER2_type -193 2836 2123 2865 130 26 0 chr3 107695596 107696056 -119828522 + L1PA14 LINE L1 5685 6156 -5 5230 147 96 43 chr3 107696056 107696337 -119828241 - Tigger3(Golem) DNA MER2_type -906 2123 1858 237 327 0 0 chr3 107696335 107696387 -119828191 - Tigger3(Golem) DNA MER2_type -2977 52 1 * 238 301 182 40 chr3 107696396 107696572 -119828006 - MIR SINE MIR -14 248 48 23 54 0 0 chr3 107696745 107696782 -119827796 + AT_rich Low_complexity Low_complexity 1 37 0 31 44 0 0 chr3 107697235 107697280 -119827298 + AT_rich Low_complexity Low_complexity 1 45 0 2385 72 0 3 chr3 107697436 107697742 -119826836 + AluY SINE Alu 1 305 -6 281 293 73 16 chr3 107697926 107698049 -119826529 + MIR SINE MIR 101 230 -32 333 221 0 0 chr3 107698229 107698333 -119826245 + L1MA7 LINE L1 6178 6281 -10 27 42 0 56 chr3 107698400 107698471 -119826107 + AT_rich Low_complexity Low_complexity 1 67 0 23 33 0 0 chr3 107699398 107699428 -119825150 + AT_rich Low_complexity Low_complexity 1 30 0 1013 154 0 12 chr3 107699889 107700058 -119824520 - AluSg/x SINE Alu -12 298 132 743 230 122 31 chr3 107700487 107700774 -119823804 + L1MCa LINE L1 779 1091 -5335 23 0 0 0 chr3 107700945 107700968 -119823610 + AT_rich Low_complexity Low_complexity 1 23 0 620 229 0 49 chr3 107701451 107701595 -119822983 + FAM SINE Alu 21 157 -28 180 0 0 0 chr3 107701598 107701618 -119822960 + (TAA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr3 107701998 107702019 -119822559 + AT_rich Low_complexity Low_complexity 1 21 0 19204 121 68 74 chr3 107702824 107705463 -119819115 + L1PA7 LINE L1 12 2666 -3488 1221 123 19 33 chr3 107705463 107705675 -119818903 + AluSg/x SINE Alu 89 297 -15 19204 121 68 74 chr3 107705675 107709030 -119815548 + L1PA7 LINE L1 2666 6152 -2 224 59 29 0 chr3 107709118 107709152 -119815426 + (TG)n Simple_repeat Simple_repeat 2 36 0 239 306 97 28 chr3 107709221 107709581 -119814997 - L1ME LINE L1 -529 5641 5257 28 0 0 0 chr3 107709770 107709798 -119814780 + AT_rich Low_complexity Low_complexity 1 28 0 219 167 0 50 chr3 107710119 107710179 -119814399 + T-rich Low_complexity Low_complexity 5 61 0 273 265 114 37 chr3 107711223 107711600 -119812978 + L1MCa LINE L1 1015 1420 -4996 359 201 287 6 chr3 107711605 107711779 -119812799 + L1M4 LINE L1 5011 5233 -913 295 340 29 10 chr3 107712710 107712813 -119811765 + L2 LINE L2 3208 3312 -1 2067 272 18 0 chr3 107712962 107713469 -119811109 - LTR53 LTR ERVL -3 516 1 393 78 0 223 chr3 107713754 107713857 -119810721 - MADE1 DNA Mariner 0 80 1 4615 165 28 36 chr3 107714129 107715069 -119809509 + L1PB4 LINE L1 5221 6154 -2 21 71 0 0 chr3 107715528 107715570 -119809008 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr3 107716112 107716134 -119808444 + AT_rich Low_complexity Low_complexity 1 22 0 293 385 87 22 chr3 107716986 107717217 -119807361 + L2 LINE L2 236 481 -2833 696 291 17 0 chr3 107717597 107717769 -119806809 + MIR SINE MIR 80 254 -8 2318 240 38 74 chr3 107717953 107718875 -119805703 + L1MB8 LINE L1 3763 4651 -1495 610 289 0 0 chr3 107718877 107719053 -119805525 + FRAM SINE Alu 1 40 0 2641 230 56 30 chr3 107719069 107719893 -119804685 + L1MB8 LINE L1 5208 6049 -129 212 349 0 0 chr3 107720091 107720157 -119804421 + GA-rich Low_complexity Low_complexity 2 67 0 269 232 161 9 chr3 107720295 107720407 -119804171 + L2 LINE L2 3185 3313 0 511 283 90 0 chr3 107720720 107720943 -119803635 - MLT1F1 LTR MaLR 0 567 325 21 0 0 0 chr3 107721980 107722001 -119802577 + AT_rich Low_complexity Low_complexity 1 21 0 222 191 0 0 chr3 107722601 107722643 -119801935 + (CA)n Simple_repeat Simple_repeat 1 42 0 3426 157 36 2 chr3 107723721 107724325 -119800253 - L1MA4 LINE L1 -289 6011 5387 274 232 0 0 chr3 107724325 107724381 -119800197 + L1M3f LINE L1 553 608 -4720 23 54 0 0 chr3 107725271 107725308 -119799270 + AT_rich Low_complexity Low_complexity 1 37 0 252 281 62 0 chr3 107725707 107725835 -119798743 + L1ME LINE L1 5759 5894 -227 803 240 43 66 chr3 107726004 107726423 -119798155 + MLT1A1 LTR MaLR 2 365 0 708 177 0 43 chr3 107726996 107727137 -119797441 - L1PB4 LINE L1 -1 6155 6021 295 181 43 112 chr3 107728095 107728130 -119796448 + LTR52 LTR ERVL 13 49 -372 1703 158 10 3 chr3 107728130 107728421 -119796157 - AluJb SINE Alu -17 295 3 295 181 43 112 chr3 107728421 107728501 -119796077 + LTR52 LTR ERVL 49 120 -301 21 0 0 0 chr3 107729393 107729414 -119795164 + AT_rich Low_complexity Low_complexity 1 21 0 2966 175 72 47 chr3 107729414 107730121 -119794457 - L1MB1 LINE L1 -1 6167 5443 6278 261 72 28 chr3 107730125 107732221 -119792357 - L1MB1 LINE L1 -1063 5083 2897 * 6747 40 0 1 chr3 107732213 107733030 -119791548 - L1PA4 LINE L1 -2 6153 5338 840 257 16 36 chr3 107733028 107733332 -119791246 - L1MB1 LINE L1 -3225 2921 2624 * 240 213 16 33 chr3 107733332 107733393 -119791185 - Tigger5 DNA MER2_type 0 2323 2264 311 186 0 0 chr3 107733457 107733516 -119791062 - Tigger5 DNA MER2_type 0 2323 2265 1190 274 18 20 chr3 107733578 107733979 -119790599 - L1MB1 LINE L1 -3548 2598 2199 366 116 14 0 chr3 107734029 107734098 -119790480 - L1PA16 LINE L1 0 6166 6097 3505 173 15 19 chr3 107734122 107734650 -119789928 - L1PA16 LINE L1 -144 6022 5493 233 29 29 0 chr3 107734650 107734684 -119789894 + (TG)n Simple_repeat Simple_repeat 2 36 0 3505 173 15 19 chr3 107734684 107734845 -119789733 - L1PA16 LINE L1 -673 5493 5331 1876 155 7 0 chr3 107734845 107735135 -119789443 - AluSx SINE Alu -20 292 1 3505 173 15 19 chr3 107735135 107735157 -119789421 - L1PA16 LINE L1 -835 5331 5310 2869 212 5 0 chr3 107735166 107735766 -119788812 + L1 LINE L1 4428 5030 -1116 43166 46 1 2 chr3 107735771 107741268 -119783310 + L1P1 LINE L1 8 5497 -658 3146 169 3 9 chr3 107741368 107741947 -119782631 - L1P LINE L1 -3522 2624 2049 3847 198 23 6 chr3 107741955 107742741 -119781837 - L1M2c LINE L1 -4740 1721 953 1575 234 34 11 chr3 107742740 107743181 -119781397 - L1M4 LINE L1 -476 6126 5676 * 23 0 0 0 chr3 107744419 107744442 -119780136 + AT_rich Low_complexity Low_complexity 1 23 0 405 320 14 7 chr3 107744525 107744672 -119779906 + LTR16C LTR ERVL 307 454 -37 1092 237 89 33 chr3 107744775 107745079 -119779499 + MLT2D LTR ERVL 1 321 -93 182 143 20 0 chr3 107745148 107745197 -119779381 + (TA)n Simple_repeat Simple_repeat 2 51 0 242 370 44 0 chr3 107745604 107745722 -119778856 + MIR SINE MIR 1 128 -80 225 255 10 41 chr3 107745927 107746025 -119778553 + (CATATA)n Simple_repeat Simple_repeat 2 96 0 1944 135 30 3 chr3 107746748 107747051 -119777527 - AluSp SINE Alu -2 311 1 451 243 108 106 chr3 107747051 107747430 -119777148 + MLT1J LTR MaLR 58 437 -74 1349 183 11 7 chr3 107747450 107747724 -119776854 - L1MC3 LINE L1 -64 7721 7447 2333 197 29 2 chr3 107747724 107748202 -119776376 - L1MC1 LINE L1 -191 6142 5652 683 286 128 28 chr3 107748217 107748678 -119775900 - L1M4 LINE L1 -1898 4666 4160 888 255 139 17 chr3 107748695 107749561 -119775017 - L1MCa LINE L1 -3644 2920 2000 213 39 0 0 chr3 107749562 107749588 -119774990 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 265 274 64 39 chr3 107749634 107749838 -119774740 - L1MCa LINE L1 -4820 1744 1536 862 262 46 46 chr3 107749845 107750020 -119774558 - L1MCa LINE L1 -5180 1384 1210 2519 58 0 3 chr3 107750020 107750332 -119774246 - AluY SINE Alu 0 311 1 1894 155 10 3 chr3 107750332 107750636 -119773942 - AluSq SINE Alu -7 306 1 862 262 46 46 chr3 107750636 107750891 -119773687 - L1MCa LINE L1 -5352 1212 953 2160 288 43 37 chr3 107750928 107751787 -119772791 - L1MCa LINE L1 -5178 867 4 2378 62 0 0 chr3 107752101 107752393 -119772185 + AluY SINE Alu 1 292 -19 1260 256 64 36 chr3 107753802 107754324 -119770254 - LTR27 LTR ERV1 -141 495 2 411 319 126 47 chr3 107754837 107755330 -119769248 - L2 LINE L2 -448 2866 2335 2065 189 48 39 chr3 107755338 107755411 -119769167 + MER92B LTR ERV1 1 72 -564 3473 149 76 18 chr3 107755411 107756033 -119768545 - PABL_A LTR ERV1 0 660 3 2065 189 48 39 chr3 107756033 107756514 -119768064 + MER92B LTR ERV1 72 559 -77 220 170 21 21 chr3 107757244 107757291 -119767287 + (CATATA)n Simple_repeat Simple_repeat 3 49 0 258 148 0 0 chr3 107757391 107757445 -119767133 + (TG)n Simple_repeat Simple_repeat 2 55 0 23 54 0 0 chr3 107758354 107758391 -119766187 + AT_rich Low_complexity Low_complexity 1 37 0 3952 190 30 46 chr3 107758878 107758907 -119765671 + L1P4 LINE L1 4289 4317 -1849 2139 114 0 3 chr3 107758907 107759204 -119765374 + AluSq SINE Alu 1 296 -17 3952 190 30 46 chr3 107759204 107760502 -119764076 + L1P4 LINE L1 4317 5577 -589 904 245 83 30 chr3 107762148 107762576 -119762002 - L1MEc LINE L1 -3671 2755 2336 314 61 20 0 chr3 107762576 107762625 -119761953 + (TCTA)n Simple_repeat Simple_repeat 4 53 0 480 264 35 13 chr3 107762626 107762729 -119761849 - L1MEc LINE L1 -4195 2287 2188 2541 232 10 69 chr3 107762729 107763496 -119761082 + MER72 LTR ERV1 1 722 0 480 264 35 13 chr3 107763496 107763602 -119760976 - L1MEc LINE L1 -4294 2188 2057 443 193 44 18 chr3 107763594 107763708 -119760870 - L1MEc LINE L1 -4757 1669 1553 * 310 250 46 37 chr3 107764018 107764126 -119760452 - MLT1G1 LTR MaLR -216 379 271 448 315 151 33 chr3 107764141 107764446 -119760132 - MLT1G1 LTR MaLR -2 593 253 358 263 45 22 chr3 107764514 107764693 -119759885 - L1M4 LINE L1 -789 5357 5175 * 379 169 212 0 chr3 107764688 107764741 -119759837 - L1MA10 LINE L1 0 6334 6282 354 240 104 32 chr3 107764741 107764895 -119759683 - L1ME1 LINE L1 -69 6097 5933 489 286 173 38 chr3 107764895 107765473 -119759105 - L1M4 LINE L1 -2247 3899 3178 3133 42 3 0 chr3 107765473 107765858 -119758720 + L1PA5 LINE L1 5761 6146 -8 489 286 173 38 chr3 107765858 107766094 -119758484 - L1M4 LINE L1 -2968 3178 2975 454 240 54 87 chr3 107766089 107766331 -119758247 + L1ME1 LINE L1 5761 5994 -172 * 1642 277 75 31 chr3 107766428 107767069 -119757509 - L1ME1 LINE L1 -438 5728 5117 1854 123 53 20 chr3 107767069 107767371 -119757207 - AluSx SINE Alu 0 312 1 1642 277 75 31 chr3 107767371 107768128 -119756450 - L1ME1 LINE L1 -1049 5117 4273 595 206 8 0 chr3 107768157 107768288 -119756290 + L1MC3 LINE L1 6906 7037 -748 * 2668 192 46 5 chr3 107768285 107768853 -119755725 + L1MC2 LINE L1 5312 5902 -442 359 335 157 5 chr3 107769321 107769518 -119755060 - MIR SINE MIR -30 232 6 272 253 0 44 chr3 107769972 107770063 -119754515 + (TATATG)n Simple_repeat Simple_repeat 4 90 0 21 82 0 0 chr3 107770095 107770144 -119754434 + AT_rich Low_complexity Low_complexity 1 49 0 185 308 125 0 chr3 107770243 107770347 -119754231 + MIR SINE MIR 82 198 -64 27 0 0 0 chr3 107770813 107770840 -119753738 + AT_rich Low_complexity Low_complexity 1 27 0 260 231 67 77 chr3 107771886 107771990 -119752588 - MIR SINE MIR -8 254 152 635 227 119 16 chr3 107774588 107774782 -119749796 - L1MC3 LINE L1 -3 7782 7569 * 895 197 28 62 chr3 107774770 107775059 -119749519 - L1MC3 LINE L1 -705 7080 6802 524 148 93 9 chr3 107775295 107775403 -119749175 + MLT1C LTR MaLR 65 181 -286 2726 153 28 74 chr3 107775413 107775993 -119748585 - MLT2B3 LTR ERVL 0 554 2 859 257 84 15 chr3 107775994 107776255 -119748323 + MLT1C LTR MaLR 187 465 -2 21 0 0 0 chr3 107776256 107776277 -119748301 + AT_rich Low_complexity Low_complexity 1 21 0 421 343 124 0 chr3 107776368 107776546 -119748032 - MIR SINE MIR -10 252 53 220 227 0 40 chr3 107776623 107776698 -119747880 + CT-rich Low_complexity Low_complexity 2 73 0 319 300 108 54 chr3 107776804 107777174 -119747404 + L1ME LINE L1 2691 3080 -3066 236 343 55 7 chr3 107777773 107777919 -119746659 - HAL1 LINE L1 -1932 575 423 365 368 74 15 chr3 107778006 107778275 -119746303 - HAL1 LINE L1 -2218 289 5 212 236 91 45 chr3 107780104 107780214 -119744364 + MIR SINE MIR 136 250 -12 343 250 14 21 chr3 107781900 107782044 -119742534 + L1ME LINE L1 4971 5113 -1033 276 100 0 0 chr3 107782114 107782154 -119742424 + (CA)n Simple_repeat Simple_repeat 2 41 0 942 225 118 43 chr3 107782302 107782675 -119741903 + MER57A LTR ERV1 3 403 0 1986 147 131 16 chr3 107782893 107783275 -119741303 - MSTA LTR MaLR 0 428 3 8771 167 16 32 chr3 107783285 107784880 -119739698 - MSTA-int LTR MaLR -8 1572 3 553 129 12 0 chr3 107784882 107784967 -119739611 - MSTA LTR MaLR 0 375 290 1062 199 166 40 chr3 107785071 107785373 -119739205 - MSTA LTR MaLR -88 340 1 1531 193 23 20 chr3 107785670 107786041 -119738537 + L1ME LINE L1 5216 5588 -578 29 28 0 0 chr3 107786044 107786080 -119738498 + AT_rich Low_complexity Low_complexity 1 36 0 1667 174 28 3 chr3 107786086 107786374 -119738204 - AluJb SINE Alu -17 295 1 6733 72 38 0 chr3 107786394 107787430 -119737148 - L1PA7 LINE L1 -2 6152 5106 496 80 0 0 chr3 107787430 107787505 -119737073 + L1PA7 LINE L1 5010 5084 -1062 1516 203 21 0 chr3 107787680 107787970 -119736608 - AluJb SINE Alu -16 296 1 24 0 0 0 chr3 107788087 107788111 -119736467 + AT_rich Low_complexity Low_complexity 1 24 0 1680 171 0 0 chr3 107788891 107789165 -119735413 + AluSx SINE Alu 1 274 -38 26 0 0 0 chr3 107789227 107789253 -119735325 + AT_rich Low_complexity Low_complexity 1 26 0 205 245 19 0 chr3 107789280 107789333 -119735245 + (TG)n Simple_repeat Simple_repeat 2 55 0 888 92 14 14 chr3 107789774 107789916 -119734662 + THE1C-int LTR MaLR 1439 1580 0 2172 143 18 0 chr3 107790023 107790365 -119734213 + THE1C LTR MaLR 28 375 0 1889 234 16 31 chr3 107791071 107791658 -119732920 + L1MB8 LINE L1 5208 5785 -399 1452 264 15 45 chr3 107791658 107792136 -119732442 - MLT1D LTR MaLR 0 467 1 1291 212 77 37 chr3 107792136 107792513 -119732065 + L1MB8 LINE L1 5787 6178 0 1121 279 64 44 chr3 107792518 107793331 -119731247 + L1ME1 LINE L1 2914 3742 -2404 477 266 22 16 chr3 107793349 107793533 -119731045 + L1ME1 LINE L1 3821 4005 -2141 285 294 39 26 chr3 107793655 107793808 -119730770 + L1ME1 LINE L1 4561 4715 -1431 192 77 0 0 chr3 107793870 107793896 -119730682 + (A)n Simple_repeat Simple_repeat 1 26 0 1517 271 75 11 chr3 107793959 107794080 -119730498 + L1ME1 LINE L1 4702 4814 -1352 1752 253 76 16 chr3 107794080 107794688 -119729890 + LTR48B LTR ERV1 1 644 0 1517 271 75 11 chr3 107794688 107795583 -119728995 + L1ME1 LINE L1 4814 5806 -360 1807 212 8 11 chr3 107795583 107795941 -119728637 - MLT1A1 LTR MaLR 0 365 9 294 224 113 64 chr3 107795944 107796192 -119728386 + L1ME1 LINE L1 5801 6099 -67 213 65 0 0 chr3 107796197 107796228 -119728350 + (CA)n Simple_repeat Simple_repeat 2 32 0 1529 264 53 66 chr3 107796812 107797399 -119727179 + MLT1E1 LTR MaLR 73 651 -3 853 251 70 74 chr3 107797509 107797955 -119726623 - LTR37B LTR ERV1 -10 458 15 955 240 65 0 chr3 107800091 107800337 -119724241 - L1P LINE L1 -851 5295 5034 2252 49 3 18 chr3 107800337 107800649 -119723929 - AluY SINE Alu 0 308 1 363 219 85 0 chr3 107801534 107801616 -119722962 - L2 LINE L2 -4 3309 3221 486 148 176 19 chr3 107801709 107801817 -119722761 - MER63 DNA MER1_type -84 752 2 929 289 45 48 chr3 107802032 107802451 -119722127 - L2 LINE L2 -397 2917 2500 321 26 0 0 chr3 107802886 107802924 -119721654 + (TTA)n Simple_repeat Simple_repeat 3 40 0 357 374 52 11 chr3 107803599 107803773 -119720805 - MIR3 SINE MIR -23 185 5 39 0 0 0 chr3 107804046 107804085 -119720493 + AT_rich Low_complexity Low_complexity 1 39 0 1318 285 60 27 chr3 107805496 107806092 -119718486 - L1MC4 LINE L1 -142 7900 7285 839 268 21 24 chr3 107806072 107806359 -119718219 - L1MB8 LINE L1 -2 6176 5891 * 1848 233 89 27 chr3 107806352 107806983 -119717595 - L1MC4 LINE L1 -748 7294 6625 1472 229 21 9 chr3 107806991 107807319 -119717259 - MLT1A1 LTR MaLR -8 357 26 421 255 55 35 chr3 107807341 107807452 -119717126 - L1MC4a LINE L1 -1211 6597 6481 294 87 0 0 chr3 107807452 107807498 -119717080 + (CA)n Simple_repeat Simple_repeat 2 47 0 421 255 55 35 chr3 107807498 107807531 -119717047 - L1MC4a LINE L1 -1327 6481 6450 273 241 51 22 chr3 107808957 107809094 -119715484 - L1P5 LINE L1 -702 5454 5314 353 298 104 70 chr3 107809106 107809462 -119715116 - L1M4 LINE L1 -843 5303 4936 216 191 29 38 chr3 107809928 107810033 -119714545 + (TAA)n Simple_repeat Simple_repeat 2 105 0 6008 116 20 6 chr3 107810235 107811546 -119713032 - L1PA8 LINE L1 0 6172 4857 6886 193 9 36 chr3 107811546 107814238 -119710340 - L1P3 LINE L1 -3789 2672 1 1044 229 21 0 chr3 107814386 107814622 -119709956 - L1MC3 LINE L1 -337 7866 7626 238 241 89 25 chr3 107814631 107814710 -119709868 - MLT1F1 LTR MaLR -431 136 53 4394 221 48 58 chr3 107814829 107816235 -119708343 - L1MC3 LINE L1 -671 7532 6141 319 260 65 52 chr3 107816341 107816572 -119708006 - L1MC3 LINE L1 -1610 4954 4721 1641 260 60 41 chr3 107816892 107817674 -119706904 - L1MC3 LINE L1 -1830 4734 3938 23 0 0 0 chr3 107817708 107817731 -119706847 + AT_rich Low_complexity Low_complexity 1 23 0 669 261 142 22 chr3 107817922 107818332 -119706246 - L1MC3 LINE L1 -3260 3304 2846 393 251 60 65 chr3 107818343 107818479 -119706099 - L1MC3 LINE L1 -3946 2799 2664 186 43 0 0 chr3 107818479 107818502 -119706076 + (TTG)n Simple_repeat Simple_repeat 2 24 0 393 251 60 65 chr3 107818502 107818695 -119705883 - L1MC3 LINE L1 -4081 2664 2425 720 285 8 11 chr3 107818726 107818986 -119705592 - L1MC3 LINE L1 -5094 951 693 1403 173 32 51 chr3 107819273 107819585 -119704993 - MER67D LTR ERV1 -203 311 6 2008 97 0 25 chr3 107819594 107819872 -119704706 + AluSc SINE Alu 33 303 -6 255 125 375 14 chr3 107820053 107820125 -119704453 + MER4A LTR ERV1 1 98 -566 1672 168 18 14 chr3 107820125 107820467 -119704111 + MER4A LTR ERV1 261 663 -1 348 140 6 183 chr3 107820615 107820779 -119703799 + MER4-int LTR ERV1 751 885 -5713 1350 123 81 58 chr3 107820780 107821162 -119703416 + MER4-int LTR ERV1 510 805 -4210 * 3539 80 72 80 chr3 107821160 107821374 -119703204 + MER4-int LTR ERV1 1804 2018 -4580 2114 109 0 3 chr3 107821374 107821685 -119702893 - AluSq SINE Alu 0 310 1 3539 80 72 80 chr3 107821685 107822167 -119702411 + MER4-int LTR ERV1 2018 2495 -4103 1347 132 74 12 chr3 107822167 107822409 -119702169 - LTR8 LTR ERV1 -434 257 1 2239 97 64 87 chr3 107822409 107822924 -119701654 + MER4-int LTR ERV1 2737 3239 -3359 3948 93 80 24 chr3 107822925 107823592 -119700986 + MER4-int LTR ERV1 3918 4621 -1977 4636 95 42 42 chr3 107823692 107824502 -119700076 + MER4-int LTR ERV1 3346 4155 -860 3265 122 24 55 chr3 107824492 107825123 -119699455 + MER4-int LTR ERV1 5986 6596 -2 * 1524 137 36 71 chr3 107825202 107825560 -119699018 + MER4A LTR ERV1 261 664 0 228 100 0 0 chr3 107826102 107826142 -119698436 + (CA)n Simple_repeat Simple_repeat 1 40 0 265 104 42 0 chr3 107828525 107828610 -119695968 - L1PA10 LINE L1 0 6168 6112 20059 186 13 19 chr3 107828713 107832486 -119692092 - L1P LINE L1 -1413 4733 983 180 77 0 0 chr3 107832486 107832512 -119692066 + (TTG)n Simple_repeat Simple_repeat 2 27 0 20059 186 13 19 chr3 107832512 107832852 -119691726 - L1P LINE L1 -5163 983 643 451 317 151 41 chr3 107833161 107833480 -119691098 + LTR33 LTR ERVL 1 354 -167 196 331 125 16 chr3 107834193 107834377 -119690201 + L2 LINE L2 3039 3242 -71 267 91 45 0 chr3 107834466 107834510 -119690068 + LTR10B LTR ERV1 6 51 -496 1905 170 81 15 chr3 107834533 107834928 -119689650 + LTR10A LTR ERV1 1 421 -188 1243 71 7 0 chr3 107834928 107835083 -119689495 + AluY SINE Alu 153 308 -3 624 159 50 14 chr3 107835090 107835232 -119689346 + LTR10A LTR ERV1 405 547 0 229 211 0 0 chr3 107835337 107835389 -119689189 + A-rich Low_complexity Low_complexity 1 52 0 28 48 0 0 chr3 107835781 107835823 -119688755 + AT_rich Low_complexity Low_complexity 1 42 0 252 54 0 81 chr3 107835841 107835915 -119688663 + (TA)n Simple_repeat Simple_repeat 1 68 0 228 163 11 76 chr3 107836017 107836109 -119688469 + (TTAAA)n Simple_repeat Simple_repeat 2 87 0 22 56 0 0 chr3 107836109 107836145 -119688433 + AT_rich Low_complexity Low_complexity 1 36 0 852 256 56 39 chr3 107836327 107836612 -119687966 + LTR53 LTR ERVL 1 290 -229 23 78 0 0 chr3 107836637 107836688 -119687890 + AT_rich Low_complexity Low_complexity 1 51 0 2149 190 26 54 chr3 107836803 107837213 -119687365 - L1M3 LINE L1 -452 5716 5340 195 42 0 0 chr3 107837213 107837237 -119687341 + (TTTTG)n Simple_repeat Simple_repeat 1 24 0 2149 190 26 54 chr3 107837237 107837523 -119687055 - L1M3 LINE L1 -828 5340 5047 260 374 0 61 chr3 107838293 107838424 -119686154 + L2 LINE L2 3137 3259 -13 303 275 12 0 chr3 107838947 107839027 -119685551 - L2 LINE L2 -4 3309 3229 3214 174 113 16 chr3 107839250 107840003 -119684575 - LTR1B LTR ERV1 0 826 1 2088 120 3 0 chr3 107840081 107840373 -119684205 - AluSc SINE Alu -16 293 1 303 250 164 10 chr3 107840454 107840558 -119684020 - MLT1E2 LTR MaLR -224 402 283 398 157 196 23 chr3 107840753 107840984 -119683594 - AluJb SINE Alu -1 301 1 21 0 0 0 chr3 107844071 107844092 -119680486 + AT_rich Low_complexity Low_complexity 1 21 0 324 363 0 0 chr3 107844511 107844671 -119679907 + CT-rich Low_complexity Low_complexity 1 160 0 1674 121 9 143 chr3 107845361 107845781 -119678797 + THE1B LTR MaLR 1 364 0 34 24 0 0 chr3 107845808 107845849 -119678729 + AT_rich Low_complexity Low_complexity 1 41 0 2755 243 39 34 chr3 107846128 107847017 -119677561 - L1MB8 LINE L1 -1 6177 5284 2158 242 45 40 chr3 107847039 107847811 -119676767 - L1MB8 LINE L1 -828 5318 4543 5439 259 53 37 chr3 107848382 107850740 -119673838 - L1MEc LINE L1 -1016 5941 3545 565 281 35 11 chr3 107850738 107851023 -119673555 - L1MEc LINE L1 -3733 3224 2933 * 332 302 161 30 chr3 107851048 107851353 -119673225 - L1MEc LINE L1 -4176 2962 2618 336 267 6 27 chr3 107851358 107851489 -119673089 - L1M4 LINE L1 -4383 2575 2070 232 194 194 0 chr3 107851492 107851559 -119673019 - L1M4 LINE L1 -4835 2020 1941 1991 92 7 17 chr3 107851564 107852178 -119672400 - MER4A LTR ERV1 0 664 101 888 210 99 83 chr3 107852183 107852634 -119671944 - L1M4 LINE L1 -5041 1814 1372 180 97 0 0 chr3 107852634 107852665 -119671913 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 888 210 99 83 chr3 107852665 107852785 -119671793 - L1M4 LINE L1 -5483 1372 1252 2212 104 3 3 chr3 107852785 107853094 -119671484 - AluSc SINE Alu 0 309 1 888 210 99 83 chr3 107853094 107853143 -119671435 - L1M4 LINE L1 -5603 1252 1205 420 20 0 0 chr3 107853710 107853759 -119670819 + (TA)n Simple_repeat Simple_repeat 1 49 0 26 0 0 0 chr3 107854430 107854456 -119670122 + AT_rich Low_complexity Low_complexity 1 26 0 186 171 0 0 chr3 107854575 107854616 -119669962 + (ATGGTG)n Simple_repeat Simple_repeat 4 44 0 1994 186 18 12 chr3 107854681 107855080 -119669498 - MER57A LTR ERV1 0 403 3 206 136 0 34 chr3 107855193 107855252 -119669326 + (TTTTTG)n Simple_repeat Simple_repeat 4 60 0 33 0 0 0 chr3 107855437 107855470 -119669108 + AT_rich Low_complexity Low_complexity 1 33 0 2187 101 13 3 chr3 107856242 107856549 -119668029 + AluY SINE Alu 1 310 -1 835 244 22 99 chr3 107856590 107856723 -119667855 - MLT1A2 LTR MaLR 0 374 232 2192 91 10 0 chr3 107856723 107857031 -119667547 - AluY SINE Alu 0 311 1 835 244 22 99 chr3 107857031 107857302 -119667276 - MLT1A2 LTR MaLR -142 232 1 736 168 6 42 chr3 107857499 107857666 -119666912 - L1MA7 LINE L1 -125 6166 6006 2610 132 42 0 chr3 107857666 107858075 -119666503 - MER41E LTR ERV1 0 512 87 457 184 70 26 chr3 107858259 107858312 -119666266 - MER41E LTR ERV1 -393 119 70 3729 137 3 78 chr3 107858312 107859059 -119665519 + LTR8 LTR ERV1 1 691 0 457 184 70 26 chr3 107859059 107859119 -119665459 - MER41E LTR ERV1 -442 70 1 1631 189 118 52 chr3 107859206 107859766 -119664812 - L1MA7 LINE L1 -282 6009 5413 319 333 0 0 chr3 107859766 107859865 -119664713 + MIR SINE MIR 55 153 -109 184 111 0 178 chr3 107859967 107860012 -119664566 + L2 LINE L2 3214 3250 -22 30 27 0 0 chr3 107860864 107860901 -119663677 + AT_rich Low_complexity Low_complexity 1 37 0 23 0 0 0 chr3 107861297 107861320 -119663258 + AT_rich Low_complexity Low_complexity 1 23 0 372 290 16 8 chr3 107862213 107862337 -119662241 + CT-rich Low_complexity Low_complexity 3 127 0 1621 108 39 0 chr3 107862395 107862627 -119661951 + AluSx SINE Alu 60 300 -12 21 0 0 0 chr3 107863195 107863216 -119661362 + AT_rich Low_complexity Low_complexity 1 21 0 507 145 107 107 chr3 107863397 107863453 -119661125 + MER34C LTR ERV1 13 68 -517 2274 54 7 4 chr3 107863453 107863758 -119660820 - AluY SINE Alu 0 306 1 507 145 107 107 chr3 107863758 107863831 -119660747 + MER34C LTR ERV1 67 143 -442 480 231 31 100 chr3 107864016 107864245 -119660333 + LTR49 LTR ERV1 373 585 -10 234 304 54 0 chr3 107864422 107864514 -119660064 - LTR48 LTR ERV1 -312 475 379 329 235 96 17 chr3 107864549 107864664 -119659914 - MER34C LTR ERV1 -373 212 89 2170 116 0 10 chr3 107864903 107865213 -119659365 - AluSx SINE Alu -5 307 1 243 258 16 0 chr3 107865843 107865905 -119658673 + (TATG)n Simple_repeat Simple_repeat 3 65 0 22 0 0 0 chr3 107867163 107867185 -119657393 + AT_rich Low_complexity Low_complexity 1 22 0 201 39 0 0 chr3 107867469 107867495 -119657083 + (TGG)n Simple_repeat Simple_repeat 1 26 0 596 172 59 41 chr3 107867609 107867778 -119656800 - AluSx SINE Alu -140 172 1 22 70 0 0 chr3 107867869 107867912 -119656666 + AT_rich Low_complexity Low_complexity 1 43 0 467 206 38 23 chr3 107868588 107868719 -119655859 + Charlie4 DNA MER1_type 51 183 -1778 4525 183 20 37 chr3 107869164 107869804 -119654774 - MER54A LTR ERVL 0 901 280 1896 159 0 13 chr3 107869804 107870118 -119654460 - AluSg SINE Alu 0 310 1 4525 183 20 37 chr3 107870118 107870392 -119654186 - MER54A LTR ERVL -621 280 3 4012 226 54 12 chr3 107870425 107871423 -119653155 + MER45B DNA AcHobo 1 1040 0 21 0 0 0 chr3 107873901 107873922 -119650656 + AT_rich Low_complexity Low_complexity 1 21 0 194 352 59 78 chr3 107874087 107874343 -119650235 - L2 LINE L2 -829 2485 2235 2038 130 0 10 chr3 107875302 107875609 -119648969 + AluSg SINE Alu 1 304 -6 23 0 0 0 chr3 107876250 107876273 -119648305 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 107877077 107877099 -119647479 + AT_rich Low_complexity Low_complexity 1 22 0 2958 206 28 17 chr3 107879255 107880016 -119644562 - L1 LINE L1 -1379 4767 3999 671 239 96 65 chr3 107880013 107880585 -119643993 - L1 LINE L1 -2892 3254 2665 * 1667 107 18 143 chr3 107880796 107881188 -119643390 - THE1C-int LTR MaLR -1306 345 3 1174 157 16 0 chr3 107881190 107881381 -119643197 - THE1C LTR MaLR 0 375 182 1194 232 38 35 chr3 107881382 107881697 -119642881 + THE1B LTR MaLR 1 316 -48 369 306 71 11 chr3 107882454 107882637 -119641941 - MIR SINE MIR -3 259 66 604 247 58 68 chr3 107882757 107882863 -119641715 - MER5A DNA MER1_type 0 189 83 189 0 0 0 chr3 107882863 107882884 -119641694 + (TTTG)n Simple_repeat Simple_repeat 1 21 0 2092 120 0 0 chr3 107882890 107883174 -119641404 - AluSx SINE Alu -26 286 3 604 247 58 68 chr3 107883174 107883250 -119641328 - MER5A DNA MER1_type -111 78 2 188 347 21 21 chr3 107883294 107883389 -119641189 + MER5A DNA MER1_type 86 180 -9 279 192 15 16 chr3 107883390 107883458 -119641120 + LTR28 LTR ERV1 10 73 -563 2307 158 26 0 chr3 107883461 107883840 -119640738 + MER61D LTR ERV1 113 501 0 23 0 0 0 chr3 107883907 107883930 -119640648 + AT_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr3 107885521 107885558 -119639020 + AT_rich Low_complexity Low_complexity 1 37 0 212 57 0 29 chr3 107886023 107886058 -119638520 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 24577 36 0 1 chr3 107886058 107889812 -119634766 - L1PA3 LINE L1 -24 6131 2382 9715 64 5 7 chr3 107889798 107891062 -119633516 - L1PA3 LINE L1 -4885 1261 1 * 2359 81 3 0 chr3 107891794 107892089 -119632489 - AluY SINE Alu -15 296 1 27 29 0 0 chr3 107893078 107893112 -119631466 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr3 107893130 107893158 -119631420 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 107893179 107893207 -119631371 + AT_rich Low_complexity Low_complexity 1 28 0 818 79 9 9 chr3 107893540 107893654 -119630924 + THE1C LTR MaLR 1 114 -261 1840 151 31 38 chr3 107893665 107893983 -119630595 - THE1B LTR MaLR -48 316 1 1217 147 16 0 chr3 107893984 107894175 -119630403 + THE1C LTR MaLR 182 375 0 9440 127 34 41 chr3 107894175 107895766 -119628812 + THE1C-int LTR MaLR 1 1580 0 2379 132 5 13 chr3 107895766 107896144 -119628434 + THE1C LTR MaLR 1 375 0 213 39 0 0 chr3 107896976 107897002 -119627576 + (T)n Simple_repeat Simple_repeat 1 26 0 1960 132 14 3 chr3 107897201 107897496 -119627082 - AluSx SINE Alu -12 300 3 27 49 0 0 chr3 107898286 107898327 -119626251 + AT_rich Low_complexity Low_complexity 1 41 0 1673 215 2 49 chr3 107898495 107898904 -119625674 + MLT1B LTR MaLR 1 390 0 24 0 0 0 chr3 107899258 107899282 -119625296 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr3 107901435 107901470 -119623108 + AT_rich Low_complexity Low_complexity 1 35 0 1052 308 77 38 chr3 107901674 107902529 -119622049 + L1MEc LINE L1 384 1294 -5427 2104 197 44 2 chr3 107902529 107902940 -119621638 + MSTA LTR MaLR 1 428 0 1052 308 77 38 chr3 107902940 107903203 -119621375 + L1MEc LINE L1 1294 1545 -5176 590 249 123 108 chr3 107903391 107903780 -119620798 + MER57A LTR ERV1 3 397 -6 240 304 74 7 chr3 107903810 107903945 -119620633 + L1MEc LINE L1 1762 1905 -4635 1508 291 74 4 chr3 107904042 107904517 -119620061 - LTR40a LTR ERVL 0 519 12 635 185 34 41 chr3 107904526 107904672 -119619906 + L1ME LINE L1 5562 5706 -458 22 70 0 0 chr3 107904671 107904714 -119619864 + AT_rich Low_complexity Low_complexity 1 43 0 * 966 266 82 29 chr3 107904794 107905110 -119619468 + L1ME LINE L1 5281 5613 -553 23 0 0 0 chr3 107905920 107905943 -119618635 + AT_rich Low_complexity Low_complexity 1 23 0 1470 99 10 0 chr3 107907039 107907241 -119617337 + AluSg/x SINE Alu 93 296 -16 189 224 0 0 chr3 107907821 107907879 -119616699 + (TA)n Simple_repeat Simple_repeat 2 59 0 26 74 0 0 chr3 107908604 107908658 -119615920 + AT_rich Low_complexity Low_complexity 1 54 0 212 355 28 9 chr3 107908785 107908892 -119615686 + L2 LINE L2 3205 3313 0 189 195 0 0 chr3 107909361 107909402 -119615176 + (TA)n Simple_repeat Simple_repeat 2 42 0 636 212 0 46 chr3 107909985 107910163 -119614415 + MER3 DNA MER1_type 2 124 -85 295 167 0 15 chr3 107910179 107910245 -119614333 - L1MA9 LINE L1 -45 6267 6203 3785 177 38 41 chr3 107910289 107911815 -119612763 - L1MA9 LINE L1 -233 6079 4536 1152 223 86 120 chr3 107911958 107912758 -119611820 + LTR1B LTR ERV1 1 972 -48 428 298 8 8 chr3 107912808 107912929 -119611649 + LTR28 LTR ERV1 900 1020 0 197 253 40 53 chr3 107912939 107913014 -119611564 - L2 LINE L2 -6 3307 3234 237 354 0 13 chr3 107913287 107913366 -119611212 - LTR16A LTR ERVL -115 335 258 257 274 189 0 chr3 107913848 107913943 -119610635 + L2 LINE L2 3201 3313 0 34 55 0 0 chr3 107915534 107915589 -119608989 + AT_rich Low_complexity Low_complexity 1 55 0 26 64 0 0 chr3 107916996 107917043 -119607535 + AT_rich Low_complexity Low_complexity 1 47 0 2357 203 7 47 chr3 107917070 107917647 -119606931 + L1MA7 LINE L1 4670 5223 -923 1355 170 8 38 chr3 107917651 107917854 -119606724 - Tigger1 DNA MER2_type -1 2417 2222 1570 184 42 0 chr3 107917854 107918137 -119606441 + AluSp SINE Alu 1 295 -18 1355 170 8 38 chr3 107918137 107918198 -119606380 - Tigger1 DNA MER2_type -196 2222 2161 * 13039 163 17 9 chr3 107918197 107920138 -119604440 - Tigger1 DNA MER2_type -113 2305 341 534 67 0 0 chr3 107920138 107920213 -119604365 + (GA)n Simple_repeat Simple_repeat 2 76 0 13039 163 17 9 chr3 107920213 107920553 -119604025 - Tigger1 DNA MER2_type -2077 341 5 3937 181 60 65 chr3 107920556 107921600 -119602978 + L1MA7 LINE L1 5224 6291 0 636 275 21 10 chr3 107922662 107922855 -119601723 - MLT1E1 LTR MaLR 0 654 460 238 194 0 0 chr3 107922899 107922935 -119601643 - MLT1E LTR MaLR -357 236 201 * 795 216 115 0 chr3 107922903 107923111 -119601467 - MLT1E1 LTR MaLR -316 338 107 314 273 133 21 chr3 107923086 107923229 -119601349 - MLT1E LTR MaLR -434 159 1 * 450 312 75 30 chr3 107923283 107923655 -119600923 - HAL1b LINE L1 -704 644 256 2095 132 0 0 chr3 107924060 107924370 -119600208 - AluSx SINE Alu -2 310 1 189 147 0 0 chr3 107924402 107924436 -119600142 + (T)n Simple_repeat Simple_repeat 1 34 0 387 155 48 48 chr3 107925496 107925580 -119598998 - MER53 DNA DNA -2 187 104 4744 139 33 18 chr3 107926041 107926604 -119597974 - L1PB3 LINE L1 0 6870 6290 2341 91 0 0 chr3 107926604 107926900 -119597678 + AluY SINE Alu 1 296 -15 4744 139 33 18 chr3 107926900 107927161 -119597417 - L1PB3 LINE L1 -580 6290 6034 10367 260 74 28 chr3 107927174 107929646 -119594932 - L1PB3 LINE L1 -992 5870 3513 1668 195 7 0 chr3 107929646 107929928 -119594650 - AluSx SINE Alu -28 284 1 10367 260 74 28 chr3 107929928 107933999 -119590579 - L1PB3 LINE L1 -3349 3513 3 218 209 0 0 chr3 107934651 107934694 -119589884 + (CAA)n Simple_repeat Simple_repeat 3 45 0 24 32 0 0 chr3 107935551 107935582 -119588996 + AT_rich Low_complexity Low_complexity 1 31 0 1441 126 9 17 chr3 107936085 107936316 -119588262 - MER30 DNA MER1_type 0 230 2 282 95 0 0 chr3 107936717 107936759 -119587819 + (TG)n Simple_repeat Simple_repeat 2 43 0 * 354 107 0 0 chr3 107936758 107936814 -119587764 + (TA)n Simple_repeat Simple_repeat 1 56 0 1959 176 45 21 chr3 107936988 107937408 -119587170 + MSTB1 LTR MaLR 3 432 0 217 200 0 57 chr3 107937447 107937517 -119587061 + A-rich Low_complexity Low_complexity 1 66 0 848 183 157 13 chr3 107938414 107938649 -119585929 - L1PA16 LINE L1 -5 6161 5893 21 0 0 0 chr3 107939841 107939862 -119584716 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 107940280 107940310 -119584268 + AT_rich Low_complexity Low_complexity 1 30 0 605 155 0 29 chr3 107941346 107941449 -119583129 - L1PA15 LINE L1 -21 6144 6045 2125 85 7 17 chr3 107942572 107942865 -119581713 + AluY SINE Alu 1 290 -21 238 309 49 32 chr3 107943487 107943610 -119580968 - LTR16C LTR ERVL -166 325 201 798 275 49 34 chr3 107943892 107944277 -119580301 - L1ME1 LINE L1 -29 6137 5747 2975 166 19 36 chr3 107944365 107944955 -119579623 - LTR22 LTR ERVK 0 580 1 695 273 0 5 chr3 107944955 107945153 -119579425 - L1ME1 LINE L1 -649 5513 5317 234 304 94 12 chr3 107945167 107945338 -119579240 - L1ME1 LINE L1 -1200 4946 4762 369 275 57 55 chr3 107945577 107946017 -119578561 - L1ME1 LINE L1 -3594 2552 2112 26 0 0 0 chr3 107947302 107947328 -119577250 + AT_rich Low_complexity Low_complexity 1 26 0 274 294 54 0 chr3 107947642 107947734 -119576844 - MIR SINE MIR -19 243 147 223 357 0 45 chr3 107947789 107947901 -119576677 - MIR SINE MIR -108 154 48 1745 148 167 14 chr3 107947968 107948339 -119576239 - MSTA LTR MaLR 0 428 1 308 299 64 92 chr3 107949132 107949460 -119575118 + L1MC4a LINE L1 6120 6438 -1370 21 0 0 0 chr3 107949476 107949497 -119575081 + AT_rich Low_complexity Low_complexity 1 21 0 36 91 0 0 chr3 107949590 107949689 -119574889 + AT_rich Low_complexity Low_complexity 1 99 0 457 261 47 31 chr3 107949692 107949887 -119574691 + L1MC4a LINE L1 6586 6834 -1043 225 0 0 0 chr3 107950690 107950715 -119573863 + (CA)n Simple_repeat Simple_repeat 2 26 0 421 185 0 3 chr3 107951023 107951108 -119573470 + AluSq SINE Alu 3 66 -237 1638 216 57 34 chr3 107951108 107951317 -119573261 + LTR2 LTR ERV1 1 204 -245 186 43 0 0 chr3 107951317 107951340 -119573238 + (TTCTG)n Simple_repeat Simple_repeat 1 23 0 1638 216 57 34 chr3 107951340 107951569 -119573009 + LTR2 LTR ERV1 204 449 0 1597 123 8 12 chr3 107951569 107951813 -119572765 + AluSq SINE Alu 63 305 -8 207 69 0 0 chr3 107951862 107951891 -119572687 + (TGG)n Simple_repeat Simple_repeat 1 29 0 2503 189 109 35 chr3 107951991 107952668 -119571910 + LTR8A LTR ERV1 1 727 0 195 301 27 27 chr3 107952703 107952776 -119571802 - L2 LINE L2 -6 3266 3194 3645 147 41 30 chr3 107953055 107953781 -119570797 + MER50 LTR ERV1 1 734 0 294 352 45 11 chr3 107953947 107954123 -119570455 + MIR SINE MIR 81 262 0 313 349 87 25 chr3 107954206 107954481 -119570097 - MLT1J2 LTR MaLR -59 391 100 27 0 0 0 chr3 107955071 107955098 -119569480 + AT_rich Low_complexity Low_complexity 1 27 0 297 0 0 0 chr3 107955967 107956000 -119568578 + (CA)n Simple_repeat Simple_repeat 2 34 0 1951 144 7 0 chr3 107956248 107956547 -119568031 + AluSx SINE Alu 3 303 -9 609 342 86 25 chr3 107957567 107958194 -119566384 - L2 LINE L2 -1 3312 2645 2038 252 79 35 chr3 107958481 107959618 -119564960 - L1ME1 LINE L1 -4 6162 4971 21 0 0 0 chr3 107959618 107959639 -119564939 + AT_rich Low_complexity Low_complexity 1 21 0 5716 250 91 21 chr3 107959713 107959931 -119564647 + L1MDa LINE L1 270 471 -6069 3764 55 36 0 chr3 107959931 107960404 -119564174 + LTR2B LTR ERV1 1 490 0 5716 250 91 21 chr3 107960404 107962072 -119562506 + L1MDa LINE L1 471 2287 -4253 1407 196 41 35 chr3 107962223 107962565 -119562013 + MLT2D LTR ERVL 5 348 -66 227 182 30 0 chr3 107962574 107962640 -119561938 + (TCTCTG)n Simple_repeat Simple_repeat 3 70 0 270 0 0 0 chr3 107962652 107962682 -119561896 + (TG)n Simple_repeat Simple_repeat 1 30 0 687 266 30 0 chr3 107962693 107962892 -119561686 - L1ME1 LINE L1 -3547 2599 2395 1274 279 60 9 chr3 107963120 107963687 -119560891 + L1MDa LINE L1 3259 3854 -2686 1713 247 137 90 chr3 107963716 107964130 -119560448 + L1MDa LINE L1 4081 4474 -2066 614 49 25 0 chr3 107964130 107964211 -119560367 + AluSg/x SINE Alu 218 300 -9 1713 247 137 90 chr3 107964211 107965145 -119559433 + L1MDa LINE L1 4474 5575 -965 3868 209 35 44 chr3 107965176 107966374 -119558204 + L1MD1 LINE L1 5044 6231 -11 1900 120 36 0 chr3 107966389 107966694 -119557884 + AluSx SINE Alu 1 315 0 602 187 0 96 chr3 107966697 107966863 -119557715 - L1M4 LINE L1 -1299 4847 4698 1133 246 40 91 chr3 107966881 107967353 -119557225 - LTR40b LTR ERVL -14 448 1 833 267 14 5 chr3 107967371 107967588 -119556990 - HERVL40 LTR ERVL -23 5507 5289 2140 94 17 0 chr3 107968121 107968409 -119556169 + AluY SINE Alu 12 304 -7 993 130 39 0 chr3 107968409 107968563 -119556015 + AluSg/x SINE Alu 134 293 -19 2200 114 0 9 chr3 107968567 107968882 -119555696 + AluSx SINE Alu 1 312 0 367 253 61 0 chr3 107968884 107968983 -119555595 - L1MC4 LINE L1 -1324 6718 6614 261 280 0 13 chr3 107968983 107969058 -119555520 - HERVL68 LTR ERVL -927 2110 2037 998 275 73 18 chr3 107969264 107969591 -119554987 + MER77 LTR ERV1 54 398 -207 4528 156 16 33 chr3 107969606 107970478 -119554100 - L1MC1 LINE L1 -10 6323 5467 886 240 26 9 chr3 107970505 107970738 -119553840 - L1MC1 LINE L1 -1866 4280 4044 2454 60 0 22 chr3 107970776 107971090 -119553488 - AluY SINE Alu -2 309 3 214 192 0 19 chr3 107971426 107971478 -119553100 + GA-rich Low_complexity Low_complexity 2 52 0 227 79 26 0 chr3 107971632 107971670 -119552908 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2152 210 22 6 chr3 107972937 107973441 -119551137 - L1MA4 LINE L1 -6 6294 5783 244 0 27 27 chr3 107973521 107973558 -119551020 + (TA)n Simple_repeat Simple_repeat 1 37 0 1234 89 0 0 chr3 107973596 107973753 -119550825 + AluY SINE Alu 1 157 -154 369 0 0 0 chr3 107973753 107973794 -119550784 + (TA)n Simple_repeat Simple_repeat 1 41 0 2655 185 14 30 chr3 107973795 107974607 -119549971 - L1MA4 LINE L1 -519 5781 4976 270 0 0 0 chr3 107974607 107974637 -119549941 + (TG)n Simple_repeat Simple_repeat 2 31 0 2655 185 14 30 chr3 107974637 107974724 -119549854 - L1MA4 LINE L1 -1324 4976 4889 28 86 0 0 chr3 107976303 107976373 -119548205 + AT_rich Low_complexity Low_complexity 1 70 0 2381 206 107 16 chr3 107976480 107977106 -119547472 - MER76 LTR ERV 0 688 6 2186 241 74 35 chr3 107977456 107978200 -119546378 - HERVL68 LTR ERVL -210 2827 2055 284 325 12 0 chr3 107978203 107978283 -119546295 + MLT1J1 LTR MaLR 95 175 -271 232 250 18 0 chr3 107978285 107978341 -119546237 + GA-rich Low_complexity Low_complexity 5 61 0 1298 205 52 23 chr3 107978986 107979332 -119545246 - MLT1A1 LTR MaLR 0 365 10 262 322 85 55 chr3 107979774 107980010 -119544568 - L2 LINE L2 -658 2656 2414 196 359 26 0 chr3 107980513 107980591 -119543987 - L2 LINE L2 0 3313 3234 2366 86 3 13 chr3 107980924 107981239 -119543339 - AluSx SINE Alu 0 312 1 46 19 0 0 chr3 107981975 107982028 -119542550 + AT_rich Low_complexity Low_complexity 1 53 0 291 71 0 0 chr3 107982633 107982675 -119541903 + (CA)n Simple_repeat Simple_repeat 2 43 0 23 33 0 0 chr3 107983722 107983752 -119540826 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr3 107983988 107984013 -119540565 + AT_rich Low_complexity Low_complexity 1 25 0 211 312 94 14 chr3 107984220 107984358 -119540220 - MIR SINE MIR -13 249 101 21 57 0 0 chr3 107984495 107984530 -119540048 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr3 107984716 107984751 -119539827 + AT_rich Low_complexity Low_complexity 1 35 0 865 298 56 46 chr3 107985199 107985789 -119538789 - L1MC4 LINE L1 -152 7890 7295 248 269 85 0 chr3 107985869 107985999 -119538579 - L1MC4 LINE L1 -967 7075 6935 296 281 12 12 chr3 107986062 107986144 -119538434 - L1MC4 LINE L1 -1248 6794 6713 415 195 12 0 chr3 107986153 107986235 -119538343 + L1MB3 LINE L1 2266 2348 -3798 1632 167 5 54 chr3 107986300 107986655 -119537923 + MER61B LTR ERV1 1 425 0 737 128 7 47 chr3 107986655 107986803 -119537775 + MER61C-int LTR ERV1 2 143 -5074 2834 153 104 122 chr3 107986879 107987922 -119536656 + MER61C-int LTR ERV1 343 1367 -3850 20520 121 26 11 chr3 107987924 107990767 -119533811 + MER61C-int LTR ERV1 1961 4858 -359 369 0 0 0 chr3 107990767 107990808 -119533770 + (TG)n Simple_repeat Simple_repeat 2 42 0 20520 121 26 11 chr3 107990808 107991172 -119533406 + MER61C-int LTR ERV1 4858 5215 -2 1746 158 8 17 chr3 107991175 107991517 -119533061 + MER61C LTR ERV1 1 434 0 2898 283 29 12 chr3 107991520 107992801 -119531777 + L1MB3 LINE L1 2392 3694 -2452 837 162 15 14 chr3 107992801 107992969 -119531609 + GA-rich Low_complexity Low_complexity 1 167 -459 1718 156 19 47 chr3 107992969 107993092 -119531486 + AluSx SINE Alu 1 126 -186 243 0 0 0 chr3 107993092 107993119 -119531459 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1718 156 19 47 chr3 107993119 107993316 -119531262 + AluSx SINE Alu 126 312 0 837 162 15 14 chr3 107993316 107993427 -119531151 + GA-rich Low_complexity Low_complexity 167 626 0 217 139 0 0 chr3 107993427 107993463 -119531115 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 544 192 36 6 chr3 107993483 107993650 -119530928 + GA-rich Low_complexity Low_complexity 3 174 0 5261 244 36 28 chr3 107993650 107993829 -119530749 + L1MB3 LINE L1 3698 3874 -2272 2201 73 3 24 chr3 107993829 107994141 -119530437 + AluY SINE Alu 1 306 0 5261 244 36 28 chr3 107994141 107995648 -119528930 + L1MB3 LINE L1 3874 5398 -748 1169 258 97 14 chr3 107995659 107996019 -119528559 + MSTD LTR MaLR 1 390 -6 2831 193 57 31 chr3 107996023 107996671 -119527907 + L1MB3 LINE L1 5402 6066 -117 876 279 58 18 chr3 107996674 107997004 -119527574 - L1PA13 LINE L1 -5200 1587 1245 1810 293 27 38 chr3 107997060 107997719 -119526859 - L1PA13 LINE L1 -6135 652 1 24 32 0 0 chr3 107997883 107997914 -119526664 + AT_rich Low_complexity Low_complexity 1 31 0 215 338 59 59 chr3 107998055 107998191 -119526387 + L2 LINE L2 3137 3272 0 33 0 0 0 chr3 107998259 107998292 -119526286 + AT_rich Low_complexity Low_complexity 1 33 0 1496 134 31 0 chr3 107998305 107998528 -119526050 - AluSp SINE Alu -83 230 1 21 57 0 0 chr3 107998839 107998874 -119525704 + AT_rich Low_complexity Low_complexity 1 35 0 307 285 151 22 chr3 107999130 107999309 -119525269 - MIR3 SINE MIR -1 207 6 21 71 0 0 chr3 108000342 108000384 -119524194 + AT_rich Low_complexity Low_complexity 1 42 0 29 0 0 0 chr3 108000670 108000699 -119523879 + AT_rich Low_complexity Low_complexity 1 29 0 21 71 0 0 chr3 108001474 108001516 -119523062 + AT_rich Low_complexity Low_complexity 1 42 0 29 0 0 0 chr3 108001802 108001831 -119522747 + AT_rich Low_complexity Low_complexity 1 29 0 2208 161 78 10 chr3 108002771 108003169 -119521409 - MSTA LTR MaLR -1 427 3 1952 128 31 0 chr3 108003532 108003821 -119520757 - AluSq SINE Alu -15 298 1 1579 188 44 22 chr3 108003997 108004364 -119520214 - THE1C LTR MaLR 0 375 1 7178 128 172 24 chr3 108004364 108005697 -119518881 - THE1C-int LTR MaLR 0 1580 51 210 71 0 0 chr3 108005697 108005725 -119518853 + (TA)n Simple_repeat Simple_repeat 1 28 0 491 86 86 0 chr3 108005744 108005896 -119518682 + (TA)n Simple_repeat Simple_repeat 2 166 0 1905 159 68 6 chr3 108005940 108006293 -119518285 - THE1C LTR MaLR 0 375 1 27 73 0 0 chr3 108006763 108006818 -119517760 + AT_rich Low_complexity Low_complexity 1 55 0 631 295 143 14 chr3 108007365 108007792 -119516786 + L1ME3A LINE L1 5603 6084 -86 303 253 32 0 chr3 108007875 108007970 -119516608 + (TA)n Simple_repeat Simple_repeat 1 98 0 5430 207 28 29 chr3 108008448 108009097 -119515481 - L1M1 LINE L1 -676 5624 4976 387 0 0 0 chr3 108009097 108009140 -119515438 + (TG)n Simple_repeat Simple_repeat 2 44 0 5430 207 28 29 chr3 108009140 108010112 -119514466 - L1M1 LINE L1 -1324 4976 3996 1133 277 92 47 chr3 108010106 108011800 -119512778 - L1MEc LINE L1 -2892 3323 1598 * 249 83 0 0 chr3 108011802 108011838 -119512740 + (TG)n Simple_repeat Simple_repeat 1 36 0 8003 132 26 10 chr3 108012195 108013448 -119511130 + HSMAR1 DNA Mariner 1 1273 -14 186 314 14 0 chr3 108014466 108014536 -119510042 + MIR SINE MIR 124 194 -68 187 298 83 0 chr3 108014650 108014734 -119509844 - L3 LINE CR1 -557 1020 930 220 379 42 0 chr3 108015352 108015447 -119509131 + L2 LINE L2 3159 3257 -15 36 62 0 0 chr3 108015517 108015581 -119508997 + AT_rich Low_complexity Low_complexity 1 64 0 624 298 104 0 chr3 108015783 108016062 -119508516 - L1ME2 LINE L1 -2 6162 5855 3220 173 13 62 chr3 108016404 108017148 -119507430 + MER67C LTR ERV1 3 710 0 3337 161 9 14 chr3 108017364 108018008 -119506570 + L1 LINE L1 4390 5030 -1116 8053 160 35 20 chr3 108018031 108019531 -119505047 + Tigger1 DNA MER2_type 897 2418 0 261 296 56 0 chr3 108019562 108019670 -119504908 - L1MEc LINE L1 -2275 3940 3827 911 270 143 56 chr3 108019670 108020133 -119504445 - MLT1E3 LTR MaLR 0 624 152 2631 283 56 61 chr3 108020136 108021925 -119502653 - L1MEc LINE L1 -2428 3787 1992 279 95 0 0 chr3 108021925 108021967 -119502611 - MER11C LTR ERVK -1028 43 2 2631 283 56 61 chr3 108021967 108022986 -119501592 - L1MEc LINE L1 -4223 1992 970 2226 287 119 32 chr3 108023070 108023327 -119501251 - L1 LINE L1 -3846 3719 3486 1478 185 66 3 chr3 108023327 108023614 -119500964 - AluJb SINE Alu -3 309 5 2226 287 119 32 chr3 108023614 108025037 -119499541 - L1 LINE L1 -4079 3486 2012 459 308 45 52 chr3 108025187 108025476 -119499102 - L1 LINE L1 -5852 1644 1358 1691 298 118 10 chr3 108025693 108026369 -119498209 - L1MEc LINE L1 -5396 1000 218 200 59 29 0 chr3 108026369 108026403 -119498175 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1691 298 118 10 chr3 108026403 108026548 -119498030 - L1MEc LINE L1 -6178 218 90 33 80 0 0 chr3 108026640 108026715 -119497863 + AT_rich Low_complexity Low_complexity 1 75 0 26 0 0 0 chr3 108027022 108027048 -119497530 + AT_rich Low_complexity Low_complexity 1 26 0 351 258 33 46 chr3 108027548 108027699 -119496879 - L1ME LINE L1 -5602 468 320 1491 292 87 34 chr3 108029378 108031314 -119493264 + L1ME2 LINE L1 4131 6162 -2 2898 6 0 0 chr3 108035066 108035383 -119489195 - AluYb8 SINE Alu -1 317 1 28 86 0 0 chr3 108035438 108035508 -119489070 + AT_rich Low_complexity Low_complexity 1 70 0 2379 206 107 16 chr3 108035615 108036241 -119488337 - MER76 LTR ERV 0 688 6 1782 249 48 34 chr3 108036591 108037150 -119487428 - HERVL68 LTR ERVL -210 2827 2261 26 0 0 0 chr3 108038580 108038606 -119485972 + AT_rich Low_complexity Low_complexity 1 26 0 316 71 36 0 chr3 108038642 108038698 -119485880 + (TCTA)n Simple_repeat Simple_repeat 4 61 0 2002 135 26 58 chr3 108038711 108038945 -119485633 + THE1C LTR MaLR 1 268 -160 2021 85 0 54 chr3 108038945 108039262 -119485316 + AluY SINE Alu 1 300 -11 2002 135 26 58 chr3 108039262 108039411 -119485167 + THE1C LTR MaLR 268 420 -8 24 32 0 0 chr3 108039563 108039594 -119484984 + AT_rich Low_complexity Low_complexity 1 31 0 474 230 15 38 chr3 108039650 108039855 -119484723 + L1MA10 LINE L1 5937 6285 -31 2154 114 0 10 chr3 108041313 108041612 -119482966 - AluSx SINE Alu -16 296 1 2057 131 3 0 chr3 108041614 108041912 -119482666 - AluSx SINE Alu -12 300 2 228 67 0 0 chr3 108042362 108042392 -119482186 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 418 245 43 0 chr3 108042831 108042925 -119481653 - MER58A DNA MER1_type -9 98 1 536 287 91 36 chr3 108043636 108043911 -119480667 - MLT1J2 LTR MaLR -120 330 41 192 246 0 0 chr3 108043970 108044039 -119480539 + T-rich Low_complexity Low_complexity 1 69 0 1144 217 40 74 chr3 108044425 108044803 -119479775 - MLT1A1 LTR MaLR 0 365 1 182 356 17 0 chr3 108045020 108045079 -119479499 + L2 LINE L2 3173 3232 -40 290 296 14 0 chr3 108046000 108046071 -119478507 - MER5B DNA MER1_type -1 177 106 234 308 55 11 chr3 108046172 108046263 -119478315 - MER5B DNA MER1_type -78 100 6 317 127 0 0 chr3 108046595 108046658 -119477920 - L1MA7 LINE L1 0 6291 6229 1281 234 0 3 chr3 108046682 108046964 -119477614 - L1PA16 LINE L1 -8 6158 5878 5421 235 18 2 chr3 108046978 108048232 -119476346 - L1PA16 LINE L1 -1059 5087 3815 22 35 0 0 chr3 108048366 108048395 -119476183 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 108048846 108048867 -119475711 + AT_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr3 108049081 108049121 -119475457 + AT_rich Low_complexity Low_complexity 1 40 0 272 272 44 26 chr3 108050480 108050594 -119473984 - MLT1K LTR MaLR -61 527 412 23 0 0 0 chr3 108052251 108052274 -119472304 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 108052608 108052629 -119471949 + AT_rich Low_complexity Low_complexity 1 21 0 41 58 0 0 chr3 108054335 108054404 -119470174 + AT_rich Low_complexity Low_complexity 1 69 0 28 0 0 0 chr3 108054893 108054921 -119469657 + AT_rich Low_complexity Low_complexity 1 28 0 181 269 239 8 chr3 108054937 108055071 -119469507 - MIR SINE MIR -12 250 86 568 356 47 0 chr3 108056148 108056384 -119468194 - LTR16B LTR ERVL -91 373 127 509 370 65 42 chr3 108056789 108057518 -119467060 - HERV16 LTR ERVL -3542 1454 710 372 311 77 52 chr3 108158552 108158800 -119365778 + LTR16A LTR ERVL 197 450 0 204 219 0 0 chr3 108158817 108158858 -119365720 + (CA)n Simple_repeat Simple_repeat 2 42 0 1231 144 5 0 chr3 108158945 108159132 -119365446 - THE1B LTR MaLR 0 364 177 2324 70 30 0 chr3 108159849 108160151 -119364427 + AluY SINE Alu 1 311 0 34 0 0 0 chr3 108160230 108160264 -119364314 + AT_rich Low_complexity Low_complexity 1 34 0 25 0 0 0 chr3 108160386 108160411 -119364167 + AT_rich Low_complexity Low_complexity 1 25 0 1308 290 16 20 chr3 108160631 108161128 -119363450 - L1MC/D LINE L1 -2058 5750 5256 21 36 0 0 chr3 108161148 108161176 -119363402 + AT_rich Low_complexity Low_complexity 1 28 0 1962 134 0 10 chr3 108161265 108161564 -119363014 - AluSc SINE Alu -10 299 4 297 0 0 0 chr3 108161624 108161657 -119362921 + (T)n Simple_repeat Simple_repeat 1 33 0 261 0 0 0 chr3 108162219 108162248 -119362330 + (TTG)n Simple_repeat Simple_repeat 2 30 0 2137 96 0 3 chr3 108162250 108162541 -119362037 - AluSg SINE Alu -20 290 1 210 209 30 0 chr3 108162575 108162642 -119361936 + (TA)n Simple_repeat Simple_repeat 2 70 0 438 20 0 0 chr3 108162667 108162718 -119361860 + (CA)n Simple_repeat Simple_repeat 2 52 0 699 217 0 0 chr3 108163432 108163561 -119361017 - FLAM_A SINE Alu 0 133 5 303 103 0 0 chr3 108163735 108163774 -119360804 - Alu SINE Alu -257 44 6 2114 246 33 78 chr3 108163783 108163903 -119360675 - L1MC/D LINE L1 -1656 4490 4366 2305 81 0 0 chr3 108163903 108164200 -119360378 - AluY SINE Alu -14 297 1 2114 246 33 78 chr3 108164200 108165175 -119359403 - L1MC/D LINE L1 -1780 4366 3445 833 170 150 4 chr3 108165205 108165386 -119359192 + MSTA LTR MaLR 1 194 -232 466 102 0 42 chr3 108165387 108165505 -119359073 - SVA Other Other -610 776 664 30 59 0 0 chr3 108167985 108168036 -119356542 + AT_rich Low_complexity Low_complexity 1 51 0 2220 102 0 37 chr3 108168522 108168845 -119355733 - AluY SINE Alu 0 311 1 252 0 0 0 chr3 108168933 108168961 -119355617 + (CAAAAA)n Simple_repeat Simple_repeat 4 31 0 279 322 93 6 chr3 108169400 108169615 -119354963 + AluYa5 SINE Alu 103 333 0 1140 213 53 63 chr3 108170345 108170645 -119353933 - AluJb SINE Alu -5 297 1 26 0 0 0 chr3 108170878 108170904 -119353674 + AT_rich Low_complexity Low_complexity 1 26 0 1159 225 44 56 chr3 108171927 108172269 -119352309 + MER58B DNA MER1_type 4 341 0 269 353 59 38 chr3 108173308 108173546 -119351032 + MIR SINE MIR 8 250 -12 1475 211 7 26 chr3 108173823 108174131 -119350447 + AluJo SINE Alu 1 302 0 377 118 0 26 chr3 108174193 108174269 -119350309 + L1PA16 LINE L1 6093 6166 0 221 57 29 0 chr3 108174577 108174612 -119349966 + (TA)n Simple_repeat Simple_repeat 1 36 0 22 0 0 0 chr3 108175840 108175862 -119348716 + AT_rich Low_complexity Low_complexity 1 22 0 24 67 0 0 chr3 108176082 108176127 -119348451 + AT_rich Low_complexity Low_complexity 1 45 0 2034 167 15 22 chr3 108176661 108177114 -119347464 - L1P4 LINE L1 -731 5430 4978 2930 134 12 12 chr3 108177114 108177612 -119346966 + L1PA13 LINE L1 5661 6160 -3 2034 167 15 22 chr3 108177612 108177638 -119346940 - L1P4 LINE L1 -1183 4978 4953 272 256 11 44 chr3 108178864 108178954 -119345624 + MER69 DNA AcHobo 2440 2526 0 225 315 90 0 chr3 108179091 108179180 -119345398 - L2 LINE L2 -1 3312 3216 1911 134 3 7 chr3 108180146 108180445 -119344133 + AluSq SINE Alu 1 298 -15 6014 151 28 20 chr3 108181352 108181690 -119342888 + L1MA2 LINE L1 4838 5172 -1132 1769 168 30 3 chr3 108181690 108181987 -119342591 + AluSx SINE Alu 1 305 -7 6014 151 28 20 chr3 108181987 108183110 -119341468 + L1MA2 LINE L1 5172 6304 0 949 204 6 2 chr3 108183627 108183826 -119340752 - L1M3 LINE L1 -495 5673 5478 449 128 23 13 chr3 108183840 108183945 -119340633 - L1M3 LINE L1 -770 5521 5414 502 359 57 19 chr3 108183982 108184300 -119340278 - ERVL LTR ERVL -3249 2515 2186 2672 218 133 37 chr3 108184430 108185402 -119339176 + L1MD2 LINE L1 5151 6207 -152 1286 250 46 43 chr3 108185597 108185989 -119338589 - MLT2D LTR ERVL -19 395 3 42 95 0 0 chr3 108187841 108187967 -119336611 + AT_rich Low_complexity Low_complexity 1 126 0 25 31 0 0 chr3 108188128 108188160 -119336418 + AT_rich Low_complexity Low_complexity 1 32 0 1858 258 20 55 chr3 108188535 108189120 -119335458 + L1M3e LINE L1 483 1047 -6442 4039 246 56 38 chr3 108189216 108190806 -119333772 + L1M3e LINE L1 2008 3626 -3939 1441 177 18 32 chr3 108190910 108191187 -119333391 + MSTA LTR MaLR 156 428 0 8178 183 57 7 chr3 108191187 108191266 -119333312 + MSTA-int LTR MaLR 1 75 -1576 1645 154 54 40 chr3 108191266 108191636 -119332942 - THE1C LTR MaLR 0 375 1 8178 183 57 7 chr3 108191636 108193128 -119331450 + MSTA-int LTR MaLR 75 1651 0 1658 190 19 3 chr3 108193128 108193439 -119331139 + MSTA LTR MaLR 1 316 -112 200 347 11 11 chr3 108193507 108193602 -119330976 - MIR SINE MIR -52 210 116 775 189 16 105 chr3 108193825 108194073 -119330505 + LTR12 LTR ERV1 238 463 -251 1469 247 39 50 chr3 108195412 108195869 -119328709 - MER74A LTR ERVL -1 557 106 773 145 21 7 chr3 108195928 108196073 -119328505 + FRAM SINE Alu 1 147 -19 315 0 0 0 chr3 108196073 108196108 -119328470 + (CAAT)n Simple_repeat Simple_repeat 2 36 0 875 117 0 0 chr3 108196186 108196306 -119328272 - AluY SINE Alu -191 120 1 603 123 9 35 chr3 108196317 108196431 -119328147 - MER75B DNA T2_type -52 191 81 3135 167 8 42 chr3 108196431 108197258 -119327320 - L1M1 LINE L1 -743 5403 4667 1619 181 21 27 chr3 108197256 108197594 -119326984 + L1MA4A LINE L1 5833 6168 -135 * 979 277 15 4 chr3 108197694 108197965 -119326613 + L1M3e LINE L1 3835 4108 -3457 7367 47 0 2 chr3 108199153 108200464 -119324114 - L1PA5 LINE L1 0 6154 4845 8855 45 6 0 chr3 108200467 108201565 -119323013 + L1PA5 LINE L1 3749 4852 -1294 3121 175 7 7 chr3 108201569 108202140 -119322438 - L1PA16 LINE L1 -3 6163 5593 5715 192 161 39 chr3 108202141 108203617 -119320961 - MER52A LTR ERV1 -75 1680 25 413 151 14 0 chr3 108203618 108203691 -119320887 - L1M1 LINE L1 -2103 4043 3970 1294 226 0 7 chr3 108203691 108203966 -119320612 + L1P LINE L1 3611 3883 -2263 204 278 113 26 chr3 108204596 108204747 -119319831 + L2 LINE L2 3101 3264 -49 1441 12 0 0 chr3 108204942 108205105 -119319473 - L1P2 LINE L1 -378 5777 5615 * 2986 66 11 0 chr3 108204999 108205472 -119319106 + L1PA4 LINE L1 5657 6152 -3 1781 214 164 48 chr3 108205742 108206447 -119318131 + LTR48 LTR ERV1 1 787 0 198 167 0 0 chr3 108207185 108207221 -119317357 + T-rich Low_complexity Low_complexity 1 36 0 3042 148 4 4 chr3 108209005 108209497 -119315081 - L1PA16 LINE L1 -9 6157 5666 22 0 0 0 chr3 108209743 108209765 -119314813 + AT_rich Low_complexity Low_complexity 1 22 0 2388 180 124 0 chr3 108209777 108210222 -119314356 - MLT2B2 LTR ERVL -8 507 8 351 0 0 0 chr3 108210517 108210556 -119314022 + (TG)n Simple_repeat Simple_repeat 2 40 0 290 264 66 71 chr3 108211851 108212048 -119312530 + L1ME3 LINE L1 5959 6154 -8 2830 195 20 10 chr3 108212204 108212296 -119312282 + L1MC1 LINE L1 5738 5828 -505 2546 154 107 48 chr3 108212296 108212874 -119311704 - LTR9 LTR ERV1 0 612 1 2830 195 20 10 chr3 108212874 108213370 -119311208 + L1MC1 LINE L1 5828 6332 -1 218 81 27 0 chr3 108213427 108213464 -119311114 + (TG)n Simple_repeat Simple_repeat 1 38 0 23 33 0 0 chr3 108214424 108214454 -119310124 + AT_rich Low_complexity Low_complexity 1 30 0 52 30 0 0 chr3 108214688 108214754 -119309824 + AT_rich Low_complexity Low_complexity 1 66 0 350 267 66 49 chr3 108216183 108216384 -119308194 + L1MD3 LINE L1 7273 7469 -526 363 106 0 0 chr3 108216384 108216450 -119308128 + (TG)n Simple_repeat Simple_repeat 2 67 0 350 267 66 49 chr3 108216450 108216559 -119308019 + L1MD3 LINE L1 7469 7684 -311 491 92 66 0 chr3 108216566 108216642 -119307936 + L1PA10 LINE L1 6088 6168 0 320 243 167 21 chr3 108216713 108216952 -119307626 + L1MC4 LINE L1 7769 8042 0 195 42 0 0 chr3 108217080 108217104 -119307474 + (TC)n Simple_repeat Simple_repeat 2 25 0 318 51 17 34 chr3 108217906 108217965 -119306613 + (TAAAA)n Simple_repeat Simple_repeat 1 58 0 22 0 0 0 chr3 108219430 108219452 -119305126 + AT_rich Low_complexity Low_complexity 1 22 0 576 342 26 0 chr3 108219919 108220153 -119304425 - LTR16C LTR ERVL -52 439 200 247 73 29 73 chr3 108220476 108220544 -119304034 + (TTTAA)n Simple_repeat Simple_repeat 1 65 0 1134 210 0 39 chr3 108221120 108221377 -119303201 - AluJo SINE Alu -12 300 54 901 167 31 70 chr3 108222198 108222425 -119302153 + MER20 DNA MER1_type 2 219 0 2112 70 42 3 chr3 108222805 108223092 -119301486 + AluY SINE Alu 1 298 -13 36 40 0 0 chr3 108223743 108223793 -119300785 + AT_rich Low_complexity Low_complexity 1 50 0 23 33 0 0 chr3 108224777 108224807 -119299771 + AT_rich Low_complexity Low_complexity 1 30 0 32 43 0 0 chr3 108225611 108225657 -119298921 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr3 108226560 108226584 -119297994 + AT_rich Low_complexity Low_complexity 1 24 0 216 179 0 0 chr3 108227000 108227039 -119297539 + CT-rich Low_complexity Low_complexity 2 40 0 423 38 0 0 chr3 108227041 108227094 -119297484 + (CA)n Simple_repeat Simple_repeat 1 53 0 208 224 35 0 chr3 108227705 108227763 -119296815 + (TA)n Simple_repeat Simple_repeat 1 60 0 23 0 0 0 chr3 108228071 108228094 -119296484 + AT_rich Low_complexity Low_complexity 1 23 0 543 292 61 40 chr3 108228145 108228491 -119296087 - L1MC/D LINE L1 -2000 5808 5456 25 31 0 0 chr3 108229566 108229598 -119294980 + AT_rich Low_complexity Low_complexity 1 32 0 3430 160 38 45 chr3 108230249 108230367 -119294211 - L1PA16 LINE L1 -9 6157 6040 2335 125 8 19 chr3 108230367 108230735 -119293843 + THE1B LTR MaLR 1 364 0 3430 160 38 45 chr3 108230735 108231323 -119293255 - L1PA16 LINE L1 -126 6040 5456 4819 171 29 40 chr3 108231324 108231641 -119292937 - L1MA8 LINE L1 -231 6060 5741 195 42 0 0 chr3 108231641 108231665 -119292913 + (TA)n Simple_repeat Simple_repeat 2 25 0 4819 171 29 40 chr3 108231665 108232067 -119292511 - L1MA8 LINE L1 -550 5741 5336 2052 67 0 8 chr3 108232067 108232322 -119292256 + AluY SINE Alu 39 291 -20 594 63 0 0 chr3 108232322 108232401 -119292177 + (TA)n Simple_repeat Simple_repeat 2 80 0 4819 171 29 40 chr3 108232401 108233486 -119291092 - L1MA8 LINE L1 -953 5338 4273 24 103 0 0 chr3 108235003 108235090 -119289488 + AT_rich Low_complexity Low_complexity 1 87 0 23 54 0 0 chr3 108235677 108235714 -119288864 + AT_rich Low_complexity Low_complexity 1 37 0 293 291 216 8 chr3 108235981 108236115 -119288463 + L1MCa LINE L1 21 182 -6244 183 49 73 0 chr3 108236136 108236177 -119288401 + (TA)n Simple_repeat Simple_repeat 1 44 0 246 191 213 0 chr3 108236183 108236277 -119288301 + L1ME LINE L1 5547 5660 -461 3467 194 39 14 chr3 108236511 108237325 -119287253 - L1MA6 LINE L1 -1 6299 5465 846 292 90 30 chr3 108238842 108239471 -119285107 - LTR50 LTR ERVL 0 795 86 381 125 0 42 chr3 108239631 108239703 -119284875 - LTR50 LTR ERVL -726 69 1 22 35 0 0 chr3 108240023 108240052 -119284526 + AT_rich Low_complexity Low_complexity 1 29 0 602 162 32 108 chr3 108240071 108240256 -119284322 - L1MCb LINE L1 -5306 739 569 1012 292 26 38 chr3 108240354 108240745 -119283833 - L1MCb LINE L1 -5489 556 171 38 22 0 0 chr3 108241790 108241835 -119282743 + AT_rich Low_complexity Low_complexity 1 45 0 256 169 17 34 chr3 108242008 108242087 -119282491 + CT-rich Low_complexity Low_complexity 1 77 0 347 239 42 70 chr3 108242087 108242346 -119282232 - L1M4 LINE L1 -1438 4708 4457 24 0 0 0 chr3 108242458 108242482 -119282096 + AT_rich Low_complexity Low_complexity 1 24 0 677 212 94 24 chr3 108242493 108242663 -119281915 + L1MDb LINE L1 143 324 -6219 590 319 13 0 chr3 108242689 108242846 -119281732 + L1MDb LINE L1 319 477 -6066 1544 217 97 39 chr3 108242857 108243548 -119281030 + L1MDb LINE L1 1273 2003 -4537 868 252 98 12 chr3 108243597 108244006 -119280572 + L1MDb LINE L1 3363 3806 -2734 1935 160 126 5 chr3 108244011 108244392 -119280186 - MSTA LTR MaLR 0 428 2 5540 186 20 23 chr3 108244393 108245482 -119279096 - MSTA-int LTR MaLR 0 1580 495 1126 95 0 0 chr3 108245482 108245630 -119278948 - AluSp/q SINE Alu -2 311 164 2626 180 21 8 chr3 108245631 108246143 -119278435 - MSTA-int LTR MaLR -1132 519 1 1047 186 118 9 chr3 108246143 108246363 -119278215 - MSTA LTR MaLR 0 428 185 494 15 0 0 chr3 108246478 108246543 -119278035 - SVA Other Other -2 1384 1320 1678 114 12 16 chr3 108246643 108246897 -119277681 + THE1C LTR MaLR 123 375 0 281 350 65 54 chr3 108249020 108249280 -119275298 + L3 LINE CR1 1050 1312 -265 22 0 0 0 chr3 108249885 108249907 -119274671 + AT_rich Low_complexity Low_complexity 1 22 0 1749 106 8 4 chr3 108249940 108250185 -119274393 - AluSc SINE Alu -63 246 1 1607 189 14 10 chr3 108250552 108250843 -119273735 + AluJb SINE Alu 1 292 -20 26 0 0 0 chr3 108251687 108251713 -119272865 + AT_rich Low_complexity Low_complexity 1 26 0 2428 54 3 19 chr3 108251713 108252027 -119272551 + AluY SINE Alu 1 309 -2 24 53 0 0 chr3 108252427 108252465 -119272113 + AT_rich Low_complexity Low_complexity 1 38 0 21 82 0 0 chr3 108253284 108253333 -119271245 + AT_rich Low_complexity Low_complexity 1 49 0 1526 166 38 35 chr3 108253353 108253643 -119270935 + AluSx SINE Alu 1 291 -21 28 0 0 0 chr3 108253643 108253671 -119270907 + AT_rich Low_complexity Low_complexity 1 28 0 27 49 0 0 chr3 108254202 108254243 -119270335 + AT_rich Low_complexity Low_complexity 1 41 0 6845 55 8 2 chr3 108254293 108255732 -119268846 + L1PA7 LINE L1 4722 6142 -12 686 78 0 20 chr3 108256566 108256668 -119267910 - L1PA8 LINE L1 -4 6168 6069 297 271 0 0 chr3 108256986 108257056 -119267522 + (TG)n Simple_repeat Simple_repeat 1 70 0 4070 175 39 8 chr3 108257919 108259232 -119265346 - L1PA16 LINE L1 -193 5973 4630 254 169 77 31 chr3 108260504 108260569 -119264009 - L1ME LINE L1 -295 5875 5808 1253 195 14 55 chr3 108260571 108260863 -119263715 - LTR4 LTR ERV1 0 596 317 294 207 17 0 chr3 108260949 108261007 -119263571 - LTR4 LTR ERV1 -239 357 299 627 215 96 48 chr3 108261164 108261373 -119263205 - L1ME LINE L1 -367 5803 5585 2310 139 17 3 chr3 108261376 108261735 -119262843 + THE1B LTR MaLR 1 364 0 265 143 41 0 chr3 108261735 108261784 -119262794 + THE1B-int LTR MaLR 1 51 -1529 * 25327 49 4 0 chr3 108261783 108265757 -119258821 + L1PA5 LINE L1 2186 6174 0 9538 121 33 40 chr3 108265758 108267310 -119257268 + THE1B-int LTR MaLR 39 1579 -1 779 123 54 15 chr3 108267311 108267441 -119257137 + THE1B LTR MaLR 1 135 -229 23 33 0 0 chr3 108267984 108268014 -119256564 + AT_rich Low_complexity Low_complexity 1 30 0 847 360 25 19 chr3 108268209 108268576 -119256002 + L2 LINE L2 2602 2970 -344 396 273 35 21 chr3 108268587 108268730 -119255848 - MER90 LTR ERV1 -12 563 419 232 276 30 81 chr3 108268737 108268914 -119255664 - L1ME3 LINE L1 -39 6131 5958 638 280 120 32 chr3 108268984 108269359 -119255219 - MER90 LTR ERV1 -166 409 2 507 107 0 0 chr3 108269376 108269451 -119255127 + (TTCC)n Simple_repeat Simple_repeat 3 77 0 993 248 136 39 chr3 108269846 108270258 -119254320 - LTR68 LTR ERV1 0 740 289 568 319 6 6 chr3 108270962 108271144 -119253434 + L1PA12 LINE L1 6 187 -7394 402 281 89 70 chr3 108271222 108271492 -119253086 + L1M2 LINE L1 792 1066 -5783 290 302 19 9 chr3 108271761 108271867 -119252711 + L1PA12 LINE L1 1834 1940 -5645 7047 225 37 21 chr3 108271965 108273179 -119251399 + L1PA12 LINE L1 2191 3385 -4199 207 0 0 0 chr3 108273179 108273202 -119251376 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 7047 225 37 21 chr3 108273202 108274142 -119250436 + L1PA12 LINE L1 3385 4390 -3194 2209 92 3 0 chr3 108274142 108274472 -119250106 + AluSp SINE Alu 1 331 0 7047 225 37 21 chr3 108274472 108275085 -119249493 + L1PA12 LINE L1 4390 4992 -2592 25 112 0 0 chr3 108275109 108275225 -119249353 + AT_rich Low_complexity Low_complexity 1 116 0 29 0 0 0 chr3 108275401 108275430 -119249148 + AT_rich Low_complexity Low_complexity 1 29 0 2757 13 0 3 chr3 108275663 108275975 -119248603 + AluYb8 SINE Alu 1 311 -7 7809 16 0 0 chr3 108276751 108278421 -119246157 - L1PA2 LINE L1 -1 6154 4485 14896 30 0 1 chr3 108278421 108280226 -119244352 + L1PA2 LINE L1 2692 4495 -1651 598 290 60 65 chr3 108280811 108281211 -119243367 + L1MC4 LINE L1 7493 7890 -152 801 308 80 50 chr3 108281367 108281965 -119242613 + ERVL LTR ERVL 1945 2599 -2925 189 107 0 0 chr3 108282328 108282356 -119242222 + (TTCA)n Simple_repeat Simple_repeat 2 29 0 193 348 90 31 chr3 108282560 108282816 -119241762 + L2 LINE L2 2232 2502 -812 974 246 93 44 chr3 108283232 108283598 -119240980 + L1ME1 LINE L1 5778 6161 -5 228 181 28 28 chr3 108283695 108283767 -119240811 + (TA)n Simple_repeat Simple_repeat 2 73 0 1660 190 31 62 chr3 108284630 108285046 -119239532 - MER57A LTR ERV1 0 403 1 1704 189 0 0 chr3 108285120 108285427 -119239151 + AluJb SINE Alu 6 312 0 549 115 96 0 chr3 108285457 108285561 -119239017 + L1MA9 LINE L1 6120 6233 -79 35 54 0 0 chr3 108285588 108285644 -119238934 + AT_rich Low_complexity Low_complexity 1 56 0 335 204 10 107 chr3 108287543 108287646 -119236932 - MER5A DNA MER1_type -2 187 95 21 0 0 0 chr3 108288129 108288150 -119236428 + AT_rich Low_complexity Low_complexity 1 21 0 222 37 0 0 chr3 108288792 108288819 -119235759 + (TA)n Simple_repeat Simple_repeat 1 27 0 24 0 0 0 chr3 108288911 108288935 -119235643 + AT_rich Low_complexity Low_complexity 1 24 0 3324 177 59 0 chr3 108289277 108289883 -119234695 - LTR48B LTR ERV1 -2 642 1 3692 148 21 66 chr3 108290005 108290722 -119233856 - LTR8 LTR ERV1 -6 685 1 4400 133 58 9 chr3 108290880 108291125 -119233453 + MER4E LTR ERV1 1 233 -546 180 0 0 0 chr3 108291125 108291145 -119233433 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 4400 133 58 9 chr3 108291145 108291642 -119232936 + MER4E LTR ERV1 233 779 0 216 111 0 0 chr3 108292609 108292645 -119231933 + (CA)n Simple_repeat Simple_repeat 1 36 0 1013 235 22 4 chr3 108292996 108293226 -119231352 + AluJo SINE Alu 40 273 -39 24 0 0 0 chr3 108294607 108294631 -119229947 + AT_rich Low_complexity Low_complexity 1 24 0 1958 180 8 13 chr3 108295301 108295678 -119228900 - THE1C LTR MaLR 0 375 1 23 33 0 0 chr3 108295685 108295715 -119228863 + AT_rich Low_complexity Low_complexity 1 30 0 904 208 6 0 chr3 108295715 108295883 -119228695 - AluSg/x SINE Alu -26 284 116 1329 77 0 0 chr3 108295987 108296156 -119228422 + AluSg/x SINE Alu 136 304 -8 215 188 62 0 chr3 108297367 108297431 -119227147 + (TTTA)n Simple_repeat Simple_repeat 1 68 0 31 26 0 0 chr3 108298232 108298270 -119226308 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr3 108298387 108298417 -119226161 + AT_rich Low_complexity Low_complexity 1 30 0 3593 175 24 9 chr3 108298862 108299558 -119225020 + L1MA8 LINE L1 3943 4649 -1497 381 244 111 37 chr3 108300499 108300634 -119223944 - MER21B LTR ERV1 -375 488 344 24 0 0 0 chr3 108301091 108301115 -119223463 + AT_rich Low_complexity Low_complexity 1 24 0 210 119 48 0 chr3 108301357 108301399 -119223179 + (TA)n Simple_repeat Simple_repeat 2 45 0 22 56 0 0 chr3 108302169 108302205 -119222373 + AT_rich Low_complexity Low_complexity 1 36 0 1753 201 22 11 chr3 108302327 108302686 -119221892 + MLT1A1 LTR MaLR 1 363 -2 773 284 40 16 chr3 108303343 108303593 -119220985 - MLT1E LTR MaLR 0 593 338 393 233 147 27 chr3 108303688 108303838 -119220740 - MLT1E LTR MaLR -423 170 3 1427 208 43 56 chr3 108303915 108304309 -119220269 + MLT1B LTR MaLR 2 390 0 22 35 0 0 chr3 108304478 108304507 -119220071 + AT_rich Low_complexity Low_complexity 1 29 0 1807 135 24 7 chr3 108304542 108304830 -119219748 - AluSx SINE Alu -19 293 1 1772 150 76 17 chr3 108304840 108305194 -119219384 - THE1C LTR MaLR 0 375 1 559 332 56 63 chr3 108305256 108305831 -119218747 - L2 LINE L2 -17 3296 2724 4764 188 34 11 chr3 108305849 108306576 -119218002 + L1MA8 LINE L1 5062 5830 -461 198 0 0 0 chr3 108306576 108306598 -119217980 + (TA)n Simple_repeat Simple_repeat 1 22 0 4764 188 34 11 chr3 108306598 108307069 -119217509 + L1MA8 LINE L1 5830 6288 -3 28 48 0 0 chr3 108307103 108307145 -119217433 + AT_rich Low_complexity Low_complexity 1 42 0 724 34 0 0 chr3 108307877 108307966 -119216612 - L1PA5 LINE L1 -1 6153 6065 6653 38 7 11 chr3 108307966 108309476 -119215102 + L1PA4 LINE L1 4530 6041 -114 492 194 188 35 chr3 108309554 108309698 -119214880 - MER4C LTR ERV1 0 465 300 1838 100 77 137 chr3 108309741 108310193 -119214385 - MER4A LTR ERV1 -239 425 1 1774 194 12 45 chr3 108310297 108310538 -119214040 - MLT1B LTR MaLR 0 390 166 1867 143 113 62 chr3 108310538 108310894 -119213684 - MSTA LTR MaLR -1 427 46 1809 174 0 7 chr3 108310894 108311193 -119213385 - AluSx SINE Alu -15 297 1 1867 143 113 62 chr3 108311193 108311242 -119213336 - MSTA LTR MaLR -382 46 1 1774 194 12 45 chr3 108311242 108311403 -119213175 - MLT1B LTR MaLR -224 166 1 1140 218 99 97 chr3 108312005 108312509 -119212069 - MLT1D LTR MaLR 0 505 1 22 0 0 0 chr3 108313404 108313426 -119211152 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr3 108313447 108313482 -119211096 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr3 108314185 108314212 -119210366 + AT_rich Low_complexity Low_complexity 1 27 0 5139 215 63 8 chr3 108314733 108316053 -119208525 - L1M1 LINE L1 -2565 5000 3608 681 193 92 21 chr3 108316114 108316142 -119208436 - L1M1 LINE L1 -3932 3633 3608 273 57 0 0 chr3 108316142 108316177 -119208401 + (TA)n Simple_repeat Simple_repeat 2 36 0 681 193 92 21 chr3 108316177 108316395 -119208183 - L1M1 LINE L1 -3957 3608 3399 * 4228 193 58 25 chr3 108316391 108317418 -119207160 + L1MA4 LINE L1 3807 4867 -1279 * 5131 180 31 4 chr3 108317412 108318494 -119206084 + L1MA4 LINE L1 5189 6296 -4 500 287 17 23 chr3 108318534 108318708 -119205870 + MER5B DNA MER1_type 1 173 -5 285 328 196 5 chr3 108319292 108319496 -119205082 + MIR SINE MIR 2 244 -18 435 317 39 24 chr3 108319566 108319774 -119204804 + HERVL LTR ERVL 4707 4917 -737 2698 277 57 30 chr3 108321688 108321960 -119202618 - L1MC4a LINE L1 -1334 6474 6211 1703 47 0 0 chr3 108321960 108322173 -119202405 - L1PA4 LINE L1 -3 6152 5940 2698 277 57 30 chr3 108322173 108323086 -119201492 - L1MC4a LINE L1 -1597 6211 5256 21 36 0 0 chr3 108323106 108323134 -119201444 + AT_rich Low_complexity Low_complexity 1 28 0 1962 134 0 10 chr3 108323223 108323522 -119201056 - AluSc SINE Alu -10 299 4 314 28 0 0 chr3 108323582 108323618 -119200960 + (T)n Simple_repeat Simple_repeat 1 36 0 29 0 0 0 chr3 108323810 108323839 -119200739 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr3 108324119 108324148 -119200430 + AT_rich Low_complexity Low_complexity 1 29 0 985 329 127 32 chr3 108324227 108325238 -119199340 - L1MC4a LINE L1 -1493 4653 3547 226 167 0 19 chr3 108326767 108326821 -119197757 + A-rich Low_complexity Low_complexity 2 54 0 21 0 0 0 chr3 108326982 108327003 -119197575 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 108327096 108327118 -119197460 + AT_rich Low_complexity Low_complexity 1 22 0 6611 27 0 0 chr3 108327270 108328044 -119196534 - L1PA2 LINE L1 -3 6152 5379 229 273 0 0 chr3 108328118 108328173 -119196405 + CT-rich Low_complexity Low_complexity 2 56 0 291 314 20 29 chr3 108328806 108328908 -119195670 - MIR3 SINE MIR 0 208 108 1883 67 0 4 chr3 108329477 108329717 -119194861 + AluY SINE Alu 73 311 0 1902 47 0 8 chr3 108330959 108331216 -119193362 - L1PA7 LINE L1 -644 5510 5256 4372 73 63 2 chr3 108331230 108331847 -119192731 + L1PA7 LINE L1 5500 6154 0 180 0 0 0 chr3 108332313 108332333 -119192245 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 460 305 79 83 chr3 108333249 108333669 -119190909 + L1M4 LINE L1 3730 4147 -1999 213 356 72 36 chr3 108333852 108334107 -119190471 + L2 LINE L2 2800 3065 -207 2205 110 0 0 chr3 108334205 108334505 -119190073 - AluY SINE Alu -11 300 1 42811 52 1 0 chr3 108334711 108340860 -119183718 + L1PA4 LINE L1 1 6155 0 229 316 34 51 chr3 108341224 108341341 -119183237 - L1M1 LINE L1 -5554 2011 1897 629 347 34 34 chr3 108341644 108342085 -119182493 - L1M1 LINE L1 -5504 1982 1542 252 400 43 0 chr3 108342298 108342483 -119182095 - LTR16A LTR ERVL -84 366 174 227 157 0 39 chr3 108343127 108343178 -119181400 + L1M4 LINE L1 4579 4627 -1519 2161 96 0 41 chr3 108343941 108344255 -119180323 - AluSq SINE Alu -12 301 1 536 356 67 8 chr3 108344321 108344588 -119179990 + MLT1I LTR MaLR 62 344 -65 334 159 16 0 chr3 108345194 108345257 -119179321 - L1PA8 LINE L1 -4 6168 6105 1041 229 0 9 chr3 108345359 108345590 -119178988 + ERVL LTR ERVL 1547 1775 -3989 971 234 92 38 chr3 108345604 108345865 -119178713 + MLT1A2 LTR MaLR 95 369 -5 251 267 64 29 chr3 108347359 108347531 -119177047 + L1M4c LINE L1 2025 2202 -4182 6640 65 6 21 chr3 108347643 108348871 -119175707 + L1PA7 LINE L1 4448 5666 -488 2014 125 0 48 chr3 108348871 108349183 -119175395 + AluSp SINE Alu 1 297 -16 6640 65 6 21 chr3 108349183 108349662 -119174916 + L1PA7 LINE L1 5666 6151 -3 357 335 43 39 chr3 108350203 108350436 -119174142 + L3 LINE CR1 1322 1555 -22 21 82 0 0 chr3 108351135 108351184 -119173394 + AT_rich Low_complexity Low_complexity 1 49 0 384 256 178 48 chr3 108351317 108351649 -119172929 + L1ME4a LINE L1 5599 5973 -148 36 62 0 0 chr3 108352549 108352613 -119171965 + AT_rich Low_complexity Low_complexity 1 64 0 1943 114 28 14 chr3 108353356 108353646 -119170932 - AluSx SINE Alu -18 294 1 231 36 0 0 chr3 108355244 108355272 -119169306 + (TTTTG)n Simple_repeat Simple_repeat 5 32 0 21 57 0 0 chr3 108356411 108356446 -119168132 + AT_rich Low_complexity Low_complexity 1 35 0 37 39 0 0 chr3 108356646 108356697 -119167881 + AT_rich Low_complexity Low_complexity 1 51 0 26 101 0 0 chr3 108356758 108356847 -119167731 + AT_rich Low_complexity Low_complexity 1 89 0 2189 92 17 0 chr3 108358074 108358368 -119166210 + AluSp SINE Alu 1 299 -14 28 0 0 0 chr3 108358589 108358617 -119165961 + AT_rich Low_complexity Low_complexity 1 28 0 10681 102 7 7 chr3 108358627 108360239 -119164339 + L1P LINE L1 2802 4413 -1733 487 270 33 7 chr3 108360473 108360625 -119163953 + Charlie2 DNA MER1_type 24 179 -2683 674 183 0 0 chr3 108360758 108360884 -119163694 + L1MB7 LINE L1 6050 6175 -9 582 227 92 19 chr3 108360965 108361172 -119163406 + Charlie2 DNA MER1_type 1851 2072 -790 387 231 36 72 chr3 108361236 108361431 -119163147 + Charlie2 DNA MER1_type 2226 2413 -449 33 43 0 0 chr3 108365074 108365121 -119159457 + AT_rich Low_complexity Low_complexity 1 47 0 1586 265 104 48 chr3 108365126 108365522 -119159056 + L1ME1 LINE L1 5176 5549 -617 2011 100 7 0 chr3 108365522 108365792 -119158786 - AluSx SINE Alu -6 306 35 1586 265 104 48 chr3 108365792 108365810 -119158768 + L1ME1 LINE L1 5549 5565 -601 2421 66 3 0 chr3 108365810 108366112 -119158466 - AluY SINE Alu -8 303 1 1586 265 104 48 chr3 108366112 108366617 -119157961 + L1ME1 LINE L1 5565 6145 -21 207 350 43 17 chr3 108368088 108368205 -119156373 - MIR SINE MIR -142 120 1 219 261 11 68 chr3 108369026 108369077 -119155501 - MER5B DNA MER1_type -74 104 58 1342 197 157 0 chr3 108369077 108369376 -119155202 - MER7A DNA MER2_type -1 345 2 219 261 11 68 chr3 108369376 108369412 -119155166 - MER5B DNA MER1_type -120 58 22 2281 66 36 3 chr3 108369444 108369745 -119154833 - AluY SINE Alu 0 311 1 29 28 0 0 chr3 108369812 108369848 -119154730 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr3 108370257 108370286 -119154292 + AT_rich Low_complexity Low_complexity 1 29 0 2031 132 0 0 chr3 108370551 108370853 -119153725 - AluSx SINE Alu 0 302 1 23 0 0 0 chr3 108371361 108371384 -119153194 + AT_rich Low_complexity Low_complexity 1 23 0 1281 177 4 0 chr3 108371494 108371720 -119152858 - Tigger1 DNA MER2_type -1026 1392 1166 865 267 41 62 chr3 108371729 108372330 -119152248 - L1M4c LINE L1 -3568 3997 3408 640 235 0 15 chr3 108372330 108372462 -119152116 - AluJo SINE Alu -176 136 7 346 281 95 30 chr3 108372468 108372857 -119151721 - L1M4c LINE L1 -4142 3425 2993 * 2935 24 0 0 chr3 108372854 108373194 -119151384 - L1P LINE L1 -1825 4321 3982 525 0 0 0 chr3 108373188 108373250 -119151328 + L1HS LINE L1 6089 6150 -5 * 375 83 0 0 chr3 108373251 108373311 -119151267 + (TAAA)n Simple_repeat Simple_repeat 1 60 0 2233 266 65 35 chr3 108373313 108373733 -119150845 - L1 LINE L1 -4238 2113 1707 1929 130 0 37 chr3 108373733 108374033 -119150545 - AluSx SINE Alu -23 289 1 2233 266 65 35 chr3 108374033 108374833 -119149745 - L1 LINE L1 -4644 1707 868 665 296 142 44 chr3 108375184 108375607 -119148971 - L1 LINE L1 -5781 500 77 236 331 145 32 chr3 108375762 108376073 -119148505 + L3 LINE CR1 1231 1576 -1 26 50 0 0 chr3 108376642 108376682 -119147896 + AT_rich Low_complexity Low_complexity 1 40 0 311 301 31 6 chr3 108377037 108377200 -119147378 + (TA)n Simple_repeat Simple_repeat 2 168 0 32 43 0 0 chr3 108377510 108377556 -119147022 + AT_rich Low_complexity Low_complexity 1 46 0 1570 170 73 21 chr3 108379282 108379612 -119144966 + MER7A DNA MER2_type 1 345 -1 196 140 60 0 chr3 108379859 108379909 -119144669 + (TATG)n Simple_repeat Simple_repeat 2 54 0 252 310 21 76 chr3 108380029 108380174 -119144404 - L1ME LINE L1 -416 5754 5618 321 277 50 97 chr3 108380187 108380375 -119144203 - L1ME LINE L1 -2416 5579 5413 837 271 87 42 chr3 108380375 108380822 -119143756 - MLT1C LTR MaLR 0 467 1 321 277 50 97 chr3 108380822 108380972 -119143606 - L1ME LINE L1 -2582 5413 5257 1705 158 7 0 chr3 108383077 108383374 -119141204 + L1PA13 LINE L1 5864 6162 -1 23 0 0 0 chr3 108383685 108383708 -119140870 + AT_rich Low_complexity Low_complexity 1 23 0 340 289 132 0 chr3 108383790 108383911 -119140667 + MER5C DNA MER1_type 19 155 -169 609 114 29 9 chr3 108384815 108384920 -119139658 - MER2 DNA MER2_type -135 210 104 30 45 0 0 chr3 108384966 108385010 -119139568 + AT_rich Low_complexity Low_complexity 1 44 0 1031 224 216 40 chr3 108385318 108385898 -119138680 + L1M4 LINE L1 2231 2912 -3234 204 125 0 0 chr3 108385898 108385930 -119138648 + (GAAA)n Simple_repeat Simple_repeat 2 33 0 21 36 0 0 chr3 108385965 108385993 -119138585 + AT_rich Low_complexity Low_complexity 1 28 0 517 291 116 26 chr3 108386243 108386511 -119138067 - MLT1I LTR MaLR -4 405 114 2473 65 0 0 chr3 108386701 108387007 -119137571 + AluY SINE Alu 1 306 -5 222 319 126 0 chr3 108387660 108387779 -119136799 - L2 LINE L2 -20 3293 3160 8447 132 15 2 chr3 108388840 108390110 -119134468 + HSMAR1 DNA Mariner 1 1287 0 300 290 101 17 chr3 108390477 108390630 -119133948 - MER20B DNA MER1_type -17 202 36 790 199 6 12 chr3 108390630 108390796 -119133782 - MER57A LTR ERV1 0 403 239 2093 128 7 0 chr3 108390797 108391102 -119133476 - MER72 LTR ERV1 -1 721 415 4574 196 133 112 chr3 108391107 108392591 -119131987 - MER52A LTR ERV1 -5 1750 235 4153 121 54 14 chr3 108392874 108393538 -119131040 - LTR8 LTR ERV1 0 691 1 1958 107 7 7 chr3 108394323 108394631 -119129947 - AluSg SINE Alu 0 309 2 36 0 0 0 chr3 108396577 108396613 -119127965 + AT_rich Low_complexity Low_complexity 1 36 0 2218 74 0 7 chr3 108397925 108398230 -119126348 + AluY SINE Alu 1 303 0 1310 224 40 43 chr3 108398896 108399271 -119125307 + MLT1A2 LTR MaLR 1 374 0 22 56 0 0 chr3 108399762 108399798 -119124780 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr3 108399908 108399936 -119124642 + AT_rich Low_complexity Low_complexity 1 28 0 253 197 30 0 chr3 108400320 108400386 -119124192 + (TAAA)n Simple_repeat Simple_repeat 2 69 0 435 311 9 82 chr3 108400994 108401213 -119123365 + MLT1K LTR MaLR 303 505 -83 2745 109 94 72 chr3 108401324 108401910 -119122668 - MER4B LTR ERV1 0 779 1 24 32 0 0 chr3 108402005 108402036 -119122542 + AT_rich Low_complexity Low_complexity 1 31 0 272 120 20 0 chr3 108402406 108402456 -119122122 + (CA)n Simple_repeat Simple_repeat 2 52 0 396 88 0 0 chr3 108402573 108402630 -119121948 + (CA)n Simple_repeat Simple_repeat 2 58 0 2175 93 7 13 chr3 108403238 108403538 -119121040 - AluSq SINE Alu -15 298 1 337 302 0 9 chr3 108403618 108403724 -119120854 + CT-rich Low_complexity Low_complexity 2 106 0 3847 129 26 3 chr3 108403761 108404382 -119120196 - MER41B LTR ERV1 0 635 1 189 107 0 0 chr3 108404531 108404559 -119120019 + (TA)n Simple_repeat Simple_repeat 1 28 0 1151 198 0 0 chr3 108404687 108404906 -119119672 - AluJo SINE Alu 0 308 90 1453 150 44 33 chr3 108405008 108405282 -119119296 + THE1B LTR MaLR 87 363 -1 240 222 0 0 chr3 108405302 108405347 -119119231 - AluJ/monomer SINE Alu -257 46 2 213 278 104 26 chr3 108407108 108407223 -119117355 + MIR SINE MIR 21 144 -118 3793 142 35 5 chr3 108407258 108407878 -119116700 - LTR9B LTR ERV1 0 644 6 21 0 0 0 chr3 108408072 108408093 -119116485 + AT_rich Low_complexity Low_complexity 1 21 0 1767 230 143 46 chr3 108409820 108410447 -119114131 - MER76 LTR ERV 0 688 1 21 57 0 0 chr3 108411045 108411080 -119113498 + AT_rich Low_complexity Low_complexity 1 35 0 1516 138 28 52 chr3 108411994 108412284 -119112294 + AluSx SINE Alu 1 283 -29 242 280 19 0 chr3 108413502 108413609 -119110969 + (TA)n Simple_repeat Simple_repeat 1 109 0 774 134 0 0 chr3 108413792 108413919 -119110659 + (TG)n Simple_repeat Simple_repeat 2 128 0 876 267 17 21 chr3 108413920 108414160 -119110418 + MER8 DNA MER2_type 1 239 0 396 71 0 0 chr3 108414170 108414226 -119110352 + (TG)n Simple_repeat Simple_repeat 1 56 0 223 260 10 62 chr3 108414502 108414598 -119109980 + L2 LINE L2 3223 3313 0 83 42 0 0 chr3 108414678 108414796 -119109782 + AT_rich Low_complexity Low_complexity 1 118 0 446 304 53 58 chr3 108414873 108415366 -119109212 - MLT1H LTR MaLR -5 544 15 2236 48 0 0 chr3 108415890 108416162 -119108416 + L1PA4 LINE L1 5861 6132 -23 868 348 109 42 chr3 108416864 108417669 -119106909 - L2 LINE L2 -337 2977 2119 511 261 108 49 chr3 108418533 108418736 -119105842 + MER58C DNA MER1_type 1 215 0 344 258 0 34 chr3 108418747 108418858 -119105720 + MIR SINE MIR 57 162 -61 1024 184 46 9 chr3 108418864 108419081 -119105497 - MER61E LTR ERV1 -4 565 341 232 196 0 39 chr3 108419132 108419183 -119105395 - MER61E LTR ERV1 -404 165 117 425 206 56 63 chr3 108419262 108419388 -119105190 - LTR25 LTR ERV1 -438 356 232 33 0 0 0 chr3 108419708 108419741 -119104837 + AT_rich Low_complexity Low_complexity 1 33 0 269 298 35 0 chr3 108419744 108419885 -119104693 + (TA)n Simple_repeat Simple_repeat 1 146 0 12306 189 22 20 chr3 108419898 108423717 -119100861 - L1MA3 LINE L1 0 6305 2483 5067 194 40 47 chr3 108423834 108426038 -119098540 - L1MA6 LINE L1 -194 7525 5250 3085 220 42 6 chr3 108426039 108426050 -119098528 - L1MA6 LINE L1 -2622 4943 4934 1563 159 12 0 chr3 108426050 108426301 -119098277 - AluSq SINE Alu -59 254 1 3085 220 42 6 chr3 108426301 108427152 -119097426 - L1MA6 LINE L1 -2631 4934 4050 2839 133 40 97 chr3 108427182 108427808 -119096770 - LTR14B LTR ERVK 0 608 19 1921 204 36 23 chr3 108427810 108428351 -119096227 - L1MA6 LINE L1 -3543 4022 3519 1648 84 0 0 chr3 108428356 108428569 -119096009 - LTR12 LTR ERV1 0 714 502 * 9103 121 25 10 chr3 108428553 108430702 -119093876 - HERV9 LTR ERV1 -6100 2299 40 1949 65 129 291 chr3 108430712 108431409 -119093169 - LTR12 LTR ERV1 -130 584 1 499 271 75 32 chr3 108431412 108431693 -119092885 - L1MA6 LINE L1 -4093 3472 3180 309 89 0 0 chr3 108432705 108432750 -119091828 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 1734 162 0 0 chr3 108432785 108433051 -119091527 - AluSx SINE Alu -46 266 1 599 316 24 58 chr3 108433640 108433969 -119090609 - MER90 LTR ERV1 -6 569 252 742 137 23 8 chr3 108433993 108434124 -119090454 + MLT2B2 LTR ERVL 1 133 -382 2326 208 67 4 chr3 108434128 108434603 -119089975 + ERVL LTR ERVL 1068 1572 -4192 804 205 131 61 chr3 108434740 108435023 -119089555 + L1M1 LINE L1 3515 3815 -3750 1300 249 7 0 chr3 108435033 108435318 -119089260 + AluJo SINE Alu 10 296 -16 5637 246 27 1 chr3 108435318 108436746 -119087832 + L1M1 LINE L1 3811 5276 -2289 1200 224 76 69 chr3 108436746 108437139 -119087439 + MSTD LTR MaLR 1 396 0 858 200 0 0 chr3 108437155 108437335 -119087243 - L1 LINE L1 -2691 3455 3276 1308 208 6 26 chr3 108437347 108437659 -119086919 + L1M1 LINE L1 5296 5601 -1964 276 258 15 0 chr3 108438015 108438081 -119086497 + MER63 DNA MER1_type 676 742 -94 1502 183 98 15 chr3 108438100 108438428 -119086150 - LTR45B LTR ERV1 -69 420 66 249 225 211 0 chr3 108438425 108438496 -119086082 - THE1B LTR MaLR -80 284 199 * 274 263 13 0 chr3 108438495 108438571 -119086007 + MER63 DNA MER1_type 984 1060 0 225 0 0 0 chr3 108438847 108438872 -119085706 + (TG)n Simple_repeat Simple_repeat 2 26 0 23 33 0 0 chr3 108439386 108439416 -119085162 + AT_rich Low_complexity Low_complexity 1 30 0 550 191 9 35 chr3 108439727 108439842 -119084736 - MER119 DNA MER1_type -22 561 450 660 191 0 0 chr3 108439893 108440008 -119084570 + FLAM_C SINE Alu 1 115 -18 873 223 9 42 chr3 108440134 108440349 -119084229 + AluJo SINE Alu 82 289 -23 1420 192 27 0 chr3 108440360 108440621 -119083957 - MER2 DNA MER2_type -76 269 2 180 97 0 0 chr3 108442076 108442107 -119082471 + (TG)n Simple_repeat Simple_repeat 2 32 0 21 36 0 0 chr3 108442352 108442380 -119082198 + AT_rich Low_complexity Low_complexity 1 28 0 272 336 19 10 chr3 108442600 108442704 -119081874 + MIR3 SINE MIR 83 187 -21 21 57 0 0 chr3 108443610 108443645 -119080933 + AT_rich Low_complexity Low_complexity 1 35 0 25 51 0 0 chr3 108443998 108444037 -119080541 + AT_rich Low_complexity Low_complexity 1 39 0 334 338 162 14 chr3 108444964 108445106 -119079472 + MER5A DNA MER1_type 21 183 -6 364 281 9 9 chr3 108445199 108445313 -119079265 - L1MC4 LINE L1 -1339 6703 6590 2074 138 53 28 chr3 108445868 108446223 -119078355 + THE1B LTR MaLR 1 364 0 9921 113 9 4 chr3 108446223 108447617 -119076961 + THE1B-int LTR MaLR 1 1402 -178 1636 121 36 29 chr3 108648729 108648845 -118875733 + AluY SINE Alu 8 122 -189 459 0 0 0 chr3 108648845 108648896 -118875682 + (TA)n Simple_repeat Simple_repeat 1 51 0 1636 121 36 29 chr3 108648896 108649059 -118875519 + AluY SINE Alu 122 289 -22 299 290 103 21 chr3 108649059 108649204 -118875374 + L3 LINE CR1 826 982 -595 505 289 64 12 chr3 108650241 108650414 -118874164 - MIR SINE MIR -61 201 20 344 261 0 57 chr3 108651863 108651951 -118872627 - L2 LINE L2 -33 3280 3198 * 370 294 98 46 chr3 108651923 108652117 -118872461 + MIR SINE MIR 57 260 -2 1335 255 88 41 chr3 108652286 108652591 -118871987 - L1M4 LINE L1 -924 5222 4933 1697 218 62 44 chr3 108652591 108653087 -118871491 + MLT1D LTR MaLR 1 505 0 1335 255 88 41 chr3 108653087 108653679 -118870899 - L1M4 LINE L1 -1213 4933 4283 25 31 0 0 chr3 108653744 108653776 -118870802 + AT_rich Low_complexity Low_complexity 1 32 0 2098 132 14 0 chr3 108654097 108654393 -118870185 + AluSx SINE Alu 1 300 -12 364 162 105 48 chr3 108654536 108654641 -118869937 - L1MC2 LINE L1 0 6344 6234 1105 256 4 7 chr3 108654644 108654918 -118869660 - MLT2D LTR ERVL -141 273 1 2414 159 64 21 chr3 108654918 108655435 -118869143 - ERVL-D LTR ERVL -7 5757 5219 848 266 53 15 chr3 108655462 108655856 -118868722 - L1M4 LINE L1 -1783 4363 3955 451 206 32 0 chr3 108655856 108655982 -118868596 - L1MD1 LINE L1 0 6242 6113 14931 151 58 24 chr3 108655986 108657612 -118866966 + L1PB1 LINE L1 3 1573 -5294 2009 135 0 0 chr3 108657612 108657923 -118866655 - AluSx SINE Alu 0 311 1 14931 151 58 24 chr3 108657923 108662453 -118862125 + L1PB1 LINE L1 1573 6376 -491 543 90 0 0 chr3 108662453 108662531 -118862047 + (TG)n Simple_repeat Simple_repeat 2 79 0 24 0 0 0 chr3 108662539 108662563 -118862015 + AT_rich Low_complexity Low_complexity 1 24 0 2134 108 10 7 chr3 108662571 108662898 -118861680 + L1PB1 LINE L1 6550 6877 0 1312 89 0 6 chr3 108663072 108663240 -118861338 - AluSg SINE Alu -143 167 1 2681 239 28 40 chr3 108663240 108664360 -118860218 - L1MEc LINE L1 -3272 2943 1493 272 30 0 0 chr3 108664541 108664574 -118860004 + U2 snRNA snRNA 1 33 -155 2182 211 69 31 chr3 108664910 108665160 -118859418 - L1ME2 LINE L1 -107 6057 5818 2033 146 30 30 chr3 108665160 108665476 -118859102 + THE1B LTR MaLR 1 319 -45 2236 122 0 0 chr3 108665476 108665770 -118858808 - AluSx SINE Alu -14 298 5 2033 146 30 30 chr3 108665770 108665817 -118858761 + THE1B LTR MaLR 318 364 0 2182 211 69 31 chr3 108665817 108666219 -118858359 - L1ME2 LINE L1 -346 5818 5380 340 308 143 37 chr3 108666407 108666694 -118857884 - L1ME2 LINE L1 -1685 4461 4117 1044 181 68 5 chr3 108666694 108666899 -118857679 + MER20 DNA MER1_type 2 219 0 340 308 143 37 chr3 108666899 108667017 -118857561 - L1ME2 LINE L1 -2029 4117 4013 1905 122 4 15 chr3 108667835 108668105 -118856473 + AluSx SINE Alu 23 289 -23 3307 92 0 7 chr3 108668299 108668746 -118855832 + MLT2A1 LTR ERVL 1 444 0 17574 79 19 2 chr3 108668746 108671179 -118853399 + HERVL-A1 LTR ERVL 1 2473 -3181 1213 60 18 0 chr3 108671181 108671347 -118853231 + MLT2A1 LTR ERVL 276 444 0 289 250 75 12 chr3 108671347 108671427 -118853151 - MIR SINE MIR -117 145 61 412 252 252 0 chr3 108672397 108672536 -118852042 + MER5A DNA MER1_type 16 189 0 294 323 106 43 chr3 108672644 108672805 -118851773 + MER5B DNA MER1_type 1 171 -7 633 275 56 6 chr3 108673064 108673242 -118851336 + MER5A DNA MER1_type 3 189 0 638 276 26 0 chr3 108673752 108673904 -118850674 - MER5B DNA MER1_type -1 177 22 495 258 205 7 chr3 108674247 108674398 -118850180 - MER5A DNA MER1_type -1 188 8 190 380 40 0 chr3 108676298 108676398 -118848180 + L2 LINE L2 3205 3308 -5 440 176 308 15 chr3 108676628 108676774 -118847804 - MER5A DNA MER1_type 0 189 1 1975 152 123 8 chr3 108677354 108677735 -118846843 + MSTB LTR MaLR 2 426 0 2394 93 0 6 chr3 108677821 108678134 -118846444 + AluSq SINE Alu 1 311 -2 23 33 0 0 chr3 108678245 108678275 -118846303 + AT_rich Low_complexity Low_complexity 1 30 0 1803 171 3 7 chr3 108678353 108678658 -118845920 + AluSx SINE Alu 1 304 -8 245 288 17 0 chr3 108679129 108679188 -118845390 + L3 LINE CR1 456 515 -1062 2242 99 10 0 chr3 108679905 108680207 -118844371 + AluSx SINE Alu 1 305 -7 784 175 36 24 chr3 108680422 108680588 -118843990 + MLT1G LTR MaLR 423 590 0 304 294 29 15 chr3 108681218 108681354 -118843224 + GA-rich Low_complexity Low_complexity 1 138 0 833 317 108 35 chr3 108682244 108683067 -118841511 + L1ME3A LINE L1 2110 3014 -3132 2837 10 0 0 chr3 108683067 108683378 -118841200 - AluYa5 SINE Alu 0 311 1 833 317 108 35 chr3 108683378 108683503 -118841075 + L1ME3A LINE L1 3014 3128 -3018 371 256 23 23 chr3 108683510 108683639 -118840939 + L1ME3A LINE L1 4073 4201 -1945 315 280 46 32 chr3 108683650 108683868 -118840710 + L1ME3A LINE L1 5730 5950 -220 317 254 68 79 chr3 108684239 108684416 -118840162 - L1ME4a LINE L1 -17 6104 5930 7026 49 10 1 chr3 108684737 108685613 -118838965 + L1PA6 LINE L1 5263 6146 -8 347 250 60 30 chr3 108685785 108685953 -118838625 + HAL1 LINE L1 2332 2504 -3 1148 116 4 17 chr3 108686990 108687316 -118837262 - L1M4c LINE L1 -3939 2444 1643 10920 102 4 9 chr3 108687323 108689802 -118834776 - L1PA7 LINE L1 -8 6146 3682 292 179 12 83 chr3 108690234 108690402 -118834176 + (TA)n Simple_repeat Simple_repeat 1 156 0 181 85 0 85 chr3 108690447 108690506 -118834072 + (TA)n Simple_repeat Simple_repeat 1 54 0 264 226 107 58 chr3 108690511 108690718 -118833860 - L1MCa LINE L1 -4271 2111 1979 1382 259 36 38 chr3 108690718 108691383 -118833195 - L1MCa LINE L1 -4675 1709 1046 1891 142 13 25 chr3 108693312 108693629 -118830949 + AluSq SINE Alu 1 313 0 2300 82 7 3 chr3 108694157 108694450 -118830128 + AluSc SINE Alu 1 294 -15 250 376 54 0 chr3 108694498 108694647 -118829931 - MIR SINE MIR -6 256 100 1739 110 4 0 chr3 108695103 108695339 -118829239 + AluSp SINE Alu 1 237 -76 198 283 0 0 chr3 108695454 108695500 -118829078 + MIR SINE MIR 106 151 -57 3074 32 11 3 chr3 108695849 108696227 -118828351 + L1PA3 LINE L1 5774 6154 -1 189 0 0 0 chr3 108697270 108697291 -118827287 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1488 174 11 19 chr3 108697299 108697569 -118827009 - AluJo SINE Alu -44 268 1 692 242 157 14 chr3 108697668 108697891 -118826687 - MIR SINE MIR 0 262 8 589 278 62 91 chr3 108698731 108699083 -118825495 - MLT1J LTR MaLR -169 342 1 2485 182 14 40 chr3 108699320 108699863 -118824715 + Tigger6a DNA MER2_type 2 530 -553 1544 185 62 75 chr3 108699863 108700279 -118824299 - MLT2D LTR ERVL -3 411 1 * 2005 159 52 85 chr3 108700279 108700722 -118823856 + Tigger6a DNA MER2_type 527 950 -647 2134 116 7 0 chr3 108700722 108701007 -118823571 + AluSx SINE Alu 1 287 -25 2005 159 52 85 chr3 108701007 108701112 -118823466 + Tigger6a DNA MER2_type 950 1057 -26 284 247 151 48 chr3 108701348 108701494 -118823084 + MIR SINE MIR 90 250 -12 424 241 145 12 chr3 108703431 108703597 -118820981 - MLT1L LTR MaLR -80 535 348 252 0 0 0 chr3 108704154 108704182 -118820396 + (TG)n Simple_repeat Simple_repeat 2 29 0 2280 83 17 3 chr3 108705780 108706080 -118818498 - AluSx SINE Alu -8 304 1 412 277 107 103 chr3 108706695 108707388 -118817190 - L1M2 LINE L1 -5771 1078 415 470 283 81 16 chr3 108708168 108708259 -118816319 + MIR3 SINE MIR 13 97 -165 327 85 0 0 chr3 108708259 108708306 -118816272 + (TA)n Simple_repeat Simple_repeat 1 47 0 470 283 81 16 chr3 108708306 108708491 -118816087 + MIR3 SINE MIR 97 253 -9 22 0 0 0 chr3 108709321 108709343 -118815235 + AT_rich Low_complexity Low_complexity 1 22 0 2186 105 0 3 chr3 108709824 108710134 -118814444 + AluSx SINE Alu 1 309 0 352 253 219 7 chr3 108710664 108710737 -118813841 - MER5B DNA MER1_type 0 178 122 297 0 0 0 chr3 108710737 108710770 -118813808 + (TG)n Simple_repeat Simple_repeat 2 34 0 352 253 219 7 chr3 108710770 108710842 -118813736 - MER5B DNA MER1_type -56 122 2 2246 93 10 13 chr3 108710911 108711247 -118813331 - AluSq SINE Alu 0 313 1 23 54 0 0 chr3 108711731 108711768 -118812810 + AT_rich Low_complexity Low_complexity 1 37 0 2299 130 87 0 chr3 108712538 108712930 -118811648 + MSTC LTR MaLR 1 426 -2 2484 45 0 0 chr3 108713305 108713626 -118810952 - AluY SINE Alu 0 311 1 206 325 139 13 chr3 108713810 108713961 -118810617 - MIR3 SINE MIR -5 203 34 802 71 0 0 chr3 108714117 108714215 -118810363 + AluY SINE Alu 1 98 -213 1312 121 22 30 chr3 108714326 108714558 -118810020 + THE1C LTR MaLR 146 375 0 2296 93 0 16 chr3 108714584 108714897 -118809681 - AluSq SINE Alu -5 308 1 206 325 139 13 chr3 108715081 108715232 -118809346 - MIR3 SINE MIR -5 203 34 2249 85 0 0 chr3 108715388 108715695 -118808883 + AluY SINE Alu 1 307 0 194 362 21 11 chr3 108716604 108716698 -118807880 - MIR SINE MIR -147 115 21 22 0 0 0 chr3 108718124 108718146 -118806432 + AT_rich Low_complexity Low_complexity 1 22 0 2475 81 3 0 chr3 108718769 108719076 -118805502 + AluY SINE Alu 1 308 -3 26 64 0 0 chr3 108722085 108722132 -118802446 + AT_rich Low_complexity Low_complexity 1 47 0 2125 143 54 42 chr3 108722173 108722601 -118801977 - Tigger2a DNA MER2_type 0 434 2 1700 192 109 12 chr3 108722621 108723106 -118801472 + L1ME1 LINE L1 5630 6161 -5 296 310 43 35 chr3 108723703 108723974 -118800604 - MLT1G LTR MaLR -193 397 54 21 0 0 0 chr3 108725317 108725338 -118799240 + AT_rich Low_complexity Low_complexity 1 21 0 980 176 34 36 chr3 108725938 108726294 -118798284 - MLT2D LTR ERVL 0 414 3 273 350 100 12 chr3 108727172 108727332 -118797246 + MIR SINE MIR 39 212 -50 291 317 122 0 chr3 108728210 108728333 -118796245 - MIR SINE MIR -33 229 92 2154 127 0 16 chr3 108728371 108728686 -118795892 + AluSx SINE Alu 1 310 -2 425 257 0 9 chr3 108729230 108729343 -118795235 + MIR SINE MIR 151 262 0 2300 110 10 0 chr3 108729437 108729745 -118794833 + AluSx SINE Alu 2 312 0 266 26 53 0 chr3 108729750 108729788 -118794790 + (GAAA)n Simple_repeat Simple_repeat 1 40 0 555 324 17 11 chr3 108729857 108730036 -118794542 - L3 LINE CR1 -78 1499 1320 269 260 26 39 chr3 108730173 108730250 -118794328 + MIR SINE MIR 82 157 -105 21 0 0 0 chr3 108731247 108731268 -118793310 + AT_rich Low_complexity Low_complexity 1 21 0 32 75 0 0 chr3 108731349 108731416 -118793162 + AT_rich Low_complexity Low_complexity 1 67 0 383 309 133 63 chr3 108731443 108731518 -118793060 - L1MC/D LINE L1 -2033 5775 5707 1662 239 102 20 chr3 108731518 108732017 -118792561 + MLT1F LTR MaLR 1 540 -2 383 309 133 63 chr3 108732017 108732429 -118792149 - L1MC/D LINE L1 -2101 5707 5254 6161 106 15 8 chr3 108732544 108733917 -118790661 - L1PA10 LINE L1 0 6168 4787 943 228 0 0 chr3 108734059 108734243 -118790335 + MER63A DNA MER1_type 27 210 0 1496 86 48 0 chr3 108734461 108734671 -118789907 + L1PA10 LINE L1 5945 6164 -4 1175 130 45 0 chr3 108734908 108735108 -118789470 + L1MC1 LINE L1 5958 6166 -167 349 331 130 14 chr3 108735302 108735534 -118789044 + MIR SINE MIR 3 259 -3 263 193 138 18 chr3 108735633 108735742 -118788836 + MIR SINE MIR 104 225 -37 2449 80 3 0 chr3 108736938 108737249 -118787329 - AluSp SINE Alu -1 312 1 201 250 29 88 chr3 108738077 108738145 -118786433 + L2 LINE L2 3209 3272 0 228 35 0 0 chr3 108739886 108739915 -118784663 + (GA)n Simple_repeat Simple_repeat 2 30 0 2362 175 38 2 chr3 108739971 108740416 -118784162 + LOR1b LTR ERV1 1 461 0 261 297 47 94 chr3 108740734 108740926 -118783652 - MIR3 SINE MIR -21 187 5 599 176 222 0 chr3 108742065 108742218 -118782360 - MER53 DNA DNA -1 188 2 267 267 0 30 chr3 108742657 108742758 -118781820 - MLT1K LTR MaLR -16 572 475 192 125 0 0 chr3 108742799 108742831 -118781747 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 258 269 90 0 chr3 108743536 108743603 -118780975 + MIR3 SINE MIR 104 176 -32 21 82 0 0 chr3 108745063 108745112 -118779466 + AT_rich Low_complexity Low_complexity 1 49 0 455 296 63 42 chr3 108745194 108745383 -118779195 - MIR SINE MIR -69 193 1 688 175 24 8 chr3 108745413 108745539 -118779039 - FLAM_A SINE Alu -5 128 1 252 86 0 0 chr3 108745541 108745576 -118779002 + (TTA)n Simple_repeat Simple_repeat 3 37 0 2116 89 0 34 chr3 108745577 108745870 -118778708 - AluSq SINE Alu -30 283 1 212 291 23 23 chr3 108746447 108746533 -118778045 + MIR SINE MIR 171 256 -6 21 57 0 0 chr3 108746939 108746974 -118777604 + AT_rich Low_complexity Low_complexity 1 35 0 64 35 0 0 chr3 108747233 108747318 -118777260 + AT_rich Low_complexity Low_complexity 1 85 0 313 220 14 78 chr3 108747364 108747505 -118777073 - L1ME4a LINE L1 -11 6110 5979 615 154 0 18 chr3 108748137 108748247 -118776331 - AluSg/x SINE Alu -10 299 192 494 275 149 18 chr3 108748853 108749075 -118775503 - MIR SINE MIR -6 256 6 1548 173 153 28 chr3 108749221 108749573 -118775005 - MSTD LTR MaLR 0 396 1 2272 238 111 34 chr3 108749577 108750247 -118774331 - MSTD-int LTR MaLR -4 1731 893 32 57 0 0 chr3 108750717 108750770 -118773808 + AT_rich Low_complexity Low_complexity 1 53 0 845 227 151 37 chr3 108751295 108751762 -118772816 - L1ME4a LINE L1 -1 6120 5601 259 197 16 0 chr3 108752789 108752850 -118771728 + (TA)n Simple_repeat Simple_repeat 2 63 0 2170 104 3 7 chr3 108752861 108753158 -118771420 - AluSp SINE Alu -17 296 1 713 175 0 29 chr3 108753167 108753304 -118771274 - FLAM_C SINE Alu 0 133 1 22 0 0 0 chr3 108753618 108753640 -118770938 + AT_rich Low_complexity Low_complexity 1 22 0 2624 35 0 10 chr3 108753858 108754169 -118770409 + AluY SINE Alu 1 308 -3 183 100 0 0 chr3 108756012 108756042 -118768536 + (TATATG)n Simple_repeat Simple_repeat 5 34 0 2147 113 0 3 chr3 108756097 108756404 -118768174 - AluSg SINE Alu 0 306 1 25 31 0 0 chr3 108756877 108756909 -118767669 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr3 108757373 108757395 -118767183 + AT_rich Low_complexity Low_complexity 1 22 0 1596 164 42 42 chr3 108761550 108761860 -118762718 - AluJb SINE Alu -2 310 1 543 292 26 7 chr3 108763439 108763593 -118760985 + MER5A DNA MER1_type 33 189 0 242 353 71 12 chr3 108764499 108764584 -118759994 + L2 LINE L2 3173 3262 -10 25 31 0 0 chr3 108764895 108764927 -118759651 + AT_rich Low_complexity Low_complexity 1 32 0 279 306 90 0 chr3 108765289 108765400 -118759178 - MIR3 SINE MIR 0 208 88 22 0 0 0 chr3 108765812 108765834 -118758744 + AT_rich Low_complexity Low_complexity 1 22 0 417 300 72 28 chr3 108767087 108767267 -118757311 - MIR SINE MIR 0 262 75 2370 65 3 3 chr3 108767451 108767742 -118756836 - AluY SINE Alu -19 292 2 499 213 150 50 chr3 108768357 108768597 -118755981 + MER113 DNA MER1_type? 4 267 -254 220 289 89 44 chr3 108768744 108768879 -118755699 + MIR3 SINE MIR 3 143 -65 29 60 0 0 chr3 108769036 108769086 -118755492 + GC_rich Low_complexity Low_complexity 1 50 0 1207 272 94 60 chr3 108771842 108772759 -118751819 - L2 LINE L2 -2 3311 2350 670 320 216 26 chr3 108773250 108773977 -118750601 + L3 LINE CR1 565 1429 -148 452 217 67 25 chr3 108774160 108774280 -118750298 + MIR SINE MIR 34 158 -104 1168 152 30 2 chr3 108774284 108774564 -118750014 + MER2 DNA MER2_type 14 345 0 282 202 124 34 chr3 108774564 108774653 -118749925 + MIR SINE MIR 156 252 -10 23 0 0 0 chr3 108775416 108775439 -118749139 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr3 108776529 108776554 -118748024 + AT_rich Low_complexity Low_complexity 1 25 0 297 163 0 0 chr3 108777322 108777371 -118747207 + MER116 DNA Mariner 1 49 -31 2083 125 3 3 chr3 108777465 108777762 -118746816 - AluSp SINE Alu -16 297 1 2153 116 3 0 chr3 108778351 108778644 -118745934 - AluSx SINE Alu -18 294 1 273 269 274 39 chr3 108779812 108780020 -118744558 + MIR SINE MIR 2 258 -4 602 248 102 0 chr3 108780060 108780217 -118744361 - MER5B DNA MER1_type -2 176 4 324 272 80 8 chr3 108780719 108780844 -118743734 + MIR SINE MIR 129 262 0 984 221 72 75 chr3 108781217 108781579 -118742999 - MLT1A1 LTR MaLR -4 361 1 2070 185 48 21 chr3 108781920 108782425 -118742153 + MLT2A2 LTR ERVL 1 546 -8 479 330 131 0 chr3 108782691 108782897 -118741681 + MIR SINE MIR 30 262 0 469 368 109 32 chr3 108782911 108783496 -118741082 + L2 LINE L2 2239 2868 -446 195 296 0 28 chr3 108783793 108783864 -118740714 + L2 LINE L2 3186 3254 -18 2367 80 0 0 chr3 108784344 108784645 -118739933 + AluY SINE Alu 1 301 -10 931 240 126 47 chr3 108785090 108785615 -118738963 + MLT1G1 LTR MaLR 1 595 0 646 163 96 37 chr3 108785976 108786111 -118738467 + FLAM_C SINE Alu 1 143 0 1667 157 67 0 chr3 108786623 108786891 -118737687 + AluJo SINE Alu 3 288 -24 215 289 172 55 chr3 108787479 108787607 -118736971 + L2 LINE L2 3171 3313 0 2233 111 36 30 chr3 108788078 108788440 -118736138 + THE1B LTR MaLR 1 364 0 30 0 0 0 chr3 108789186 108789216 -118735362 + AT_rich Low_complexity Low_complexity 1 30 0 39 0 0 0 chr3 108792144 108792183 -118732395 + AT_rich Low_complexity Low_complexity 1 39 0 540 313 83 9 chr3 108792298 108792528 -118732050 + MIR SINE MIR 12 258 -4 373 241 24 0 chr3 108792970 108793053 -118731525 + L2 LINE L2 3186 3270 -2 2549 168 42 0 chr3 108795386 108795863 -118728715 + L1MB3 LINE L1 5684 6180 -3 1689 163 0 34 chr3 108796064 108796359 -118728219 + AluJb SINE Alu 5 289 -23 517 298 102 28 chr3 108796666 108797355 -118727223 + L1ME4a LINE L1 5381 6120 -1 11252 200 47 14 chr3 108799340 108803194 -118721384 - L1MA8 LINE L1 -4 7247 3276 2192 268 106 29 chr3 108803209 108805466 -118719112 - L1MA8 LINE L1 -4002 3104 1028 1080 196 21 61 chr3 108805475 108805755 -118718823 - L1MA8 LINE L1 -6753 277 9 27 81 0 0 chr3 108805784 108805846 -118718732 + AT_rich Low_complexity Low_complexity 1 62 0 442 314 62 10 chr3 108806025 108806219 -118718359 + LTR16A LTR ERVL 240 443 -7 204 273 30 30 chr3 108806636 108806702 -118717876 + L2 LINE L2 3207 3272 0 24 0 0 0 chr3 108807196 108807220 -118717358 + AT_rich Low_complexity Low_complexity 1 24 0 46 33 0 0 chr3 108807574 108807634 -118716944 + AT_rich Low_complexity Low_complexity 1 60 0 2094 148 0 0 chr3 108807983 108808294 -118716284 + AluSx SINE Alu 1 311 -1 15424 127 35 12 chr3 108808643 108811154 -118713424 + L1PBa LINE L1 5 2574 -4289 17180 93 24 8 chr3 108811154 108813692 -118710886 + L1PBa LINE L1 3302 5880 -982 26 30 0 0 chr3 108813841 108813874 -118710704 + GC_rich Low_complexity Low_complexity 1 33 0 3902 211 23 7 chr3 108814302 108815182 -118709396 + L1MC3 LINE L1 6865 7758 -27 933 298 64 22 chr3 108815276 108815900 -118708678 + L1MC4 LINE L1 7188 7837 -205 217 197 33 0 chr3 108815929 108815990 -118708588 + (TA)n Simple_repeat Simple_repeat 1 63 0 322 278 83 19 chr3 108816278 108816386 -118708192 + MIR SINE MIR 12 126 -136 1706 169 117 65 chr3 108816567 108817010 -118707568 + MER31A LTR ERV1 1 466 0 1154 237 16 127 chr3 108817095 108817601 -118706977 + MER31A-int LTR ERV1 52 501 -4435 212 235 20 0 chr3 108818843 108818894 -118705684 + L2 LINE L2 1171 1222 -2092 393 123 0 0 chr3 108818899 108818964 -118705614 + (TA)n Simple_repeat Simple_repeat 1 65 0 1926 160 0 3 chr3 108818965 108819259 -118705319 - AluSx SINE Alu -16 296 4 247 219 95 9 chr3 108820332 108820437 -118704141 - L1M LINE L1 -2616 5379 5266 210 37 0 0 chr3 108820511 108820538 -118704040 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 235 300 33 8 chr3 108820577 108820697 -118703881 - LTR33A LTR ERVL -8 515 393 450 314 85 5 chr3 108820745 108820933 -118703645 - LTR33A LTR ERVL -260 263 61 1007 253 57 59 chr3 108821191 108821715 -118702863 - PABL_B LTR ERV1 0 667 1 1167 275 39 10 chr3 108821860 108822169 -118702409 + L1M4b LINE L1 382 699 -6160 2316 199 21 2 chr3 108822171 108822954 -118701624 + L1M4 LINE L1 4927 5727 -457 2445 84 0 0 chr3 108822998 108823308 -118701270 + AluY SINE Alu 1 310 -1 447 339 67 47 chr3 108823829 108824190 -118700388 + L2 LINE L2 2746 3272 0 222 311 198 35 chr3 108824545 108824828 -118699750 - L2 LINE L2 -1304 2010 1682 195 284 179 63 chr3 108824888 108825023 -118699555 + L2 LINE L2 1978 2096 -1218 1237 173 73 3 chr3 108825023 108825324 -118699254 + MER33 DNA MER1_type 3 324 0 195 284 179 63 chr3 108825324 108825484 -118699094 + L2 LINE L2 2096 2236 -1078 1573 176 32 14 chr3 108825484 108825768 -118698810 + AluJo SINE Alu 12 300 -12 195 284 179 63 chr3 108825768 108825900 -118698678 + L2 LINE L2 2236 2456 -858 543 111 12 0 chr3 108825907 108825988 -118698590 - AluS SINE Alu -231 82 1 362 324 37 44 chr3 108825994 108826322 -118698256 + L2 LINE L2 2698 3049 -223 695 284 23 58 chr3 108826389 108826646 -118697932 - MIR SINE MIR -10 252 5 258 300 33 22 chr3 108826789 108826879 -118697699 + L2 LINE L2 3209 3299 -14 195 100 20 40 chr3 108826913 108826963 -118697615 + (GAAA)n Simple_repeat Simple_repeat 1 49 0 208 350 108 19 chr3 108827252 108827409 -118697169 + L2 LINE L2 2864 3034 -238 2034 122 0 3 chr3 108827907 108828201 -118696377 + AluSc SINE Alu 1 293 -16 204 40 0 0 chr3 108828296 108828321 -118696257 + (CTAG)n Simple_repeat Simple_repeat 3 27 0 2097 59 9 81 chr3 108828435 108828792 -118695786 + AluY SINE Alu 1 311 0 677 136 36 14 chr3 108829332 108829472 -118695106 - L1PA13 LINE L1 -2 6161 6019 310 250 38 0 chr3 108830338 108830418 -118694160 + L2 LINE L2 3229 3311 -2 23 33 0 0 chr3 108831291 108831321 -118693257 + AT_rich Low_complexity Low_complexity 1 30 0 2246 120 6 0 chr3 108832580 108832914 -118691664 - L1PA15 LINE L1 -119 6046 5711 2395 157 57 13 chr3 108833125 108833602 -118690976 + L1MB3 LINE L1 5684 6181 -2 853 163 36 24 chr3 108834198 108834364 -118690214 + MLT1G LTR MaLR 423 590 0 304 294 29 15 chr3 108834993 108835129 -118689449 + GA-rich Low_complexity Low_complexity 1 138 0 824 313 113 37 chr3 108836018 108836839 -118687739 + L1ME3A LINE L1 2110 3014 -3132 2850 10 0 0 chr3 108836839 108837150 -118687428 - AluYa5 SINE Alu 0 311 1 824 313 113 37 chr3 108837150 108837275 -118687303 + L1ME3A LINE L1 3014 3128 -3018 403 256 23 23 chr3 108837282 108837411 -118687167 + L1ME3A LINE L1 4073 4201 -1945 433 281 32 32 chr3 108837422 108837643 -118686935 + L1ME3A LINE L1 5730 5950 -220 317 254 68 79 chr3 108838014 108838191 -118686387 - L1ME4a LINE L1 -17 6104 5930 6967 52 5 5 chr3 108838511 108839399 -118685179 + L1PA6 LINE L1 5263 6150 -4 528 263 109 46 chr3 108839728 108840268 -118684310 + L1ME4a LINE L1 5548 6121 0 1918 135 10 26 chr3 108841025 108841329 -118683249 - AluSx SINE Alu -13 299 1 521 117 0 0 chr3 108842367 108842444 -118682134 + L1PA10 LINE L1 6092 6168 0 2204 102 13 3 chr3 108842859 108843163 -118681415 - AluSp SINE Alu -6 307 1 382 320 98 52 chr3 108843549 108843855 -118680723 - L2 LINE L2 -97 3216 2897 1116 202 20 28 chr3 108843994 108844246 -118680332 - MLT1D LTR MaLR 0 505 256 22 0 0 0 chr3 108844299 108844321 -118680257 + AT_rich Low_complexity Low_complexity 1 22 0 342 212 119 19 chr3 108844378 108844513 -118680065 - MLT1D LTR MaLR -435 70 3 478 261 175 55 chr3 108844603 108844860 -118679718 - L2 LINE L2 -899 2415 2128 883 106 28 0 chr3 108844982 108845124 -118679454 - L1P LINE L1 -850 5296 5151 1917 137 0 7 chr3 108845227 108845519 -118679059 + AluSx SINE Alu 1 290 -22 504 273 47 0 chr3 108845636 108845786 -118678792 + LTR16C LTR ERVL 333 489 -2 37 0 0 0 chr3 108846226 108846263 -118678315 + AT_rich Low_complexity Low_complexity 1 37 0 36 82 0 0 chr3 108846816 108846901 -118677677 + AT_rich Low_complexity Low_complexity 1 85 0 228 172 0 0 chr3 108846992 108847050 -118677528 + T-rich Low_complexity Low_complexity 1 58 0 3690 167 46 5 chr3 108847391 108848039 -118676539 + Tigger1 DNA MER2_type 2 676 -1742 * 6680 143 20 15 chr3 108848036 108849167 -118675411 + Tigger1 DNA MER2_type 1202 2338 -80 4631 85 21 11 chr3 108849511 108850222 -118674356 - L1PA8 LINE L1 -6 6166 5394 9275 21 1 0 chr3 108850334 108851617 -118672961 + L1P1 LINE L1 4236 5519 -636 4234 154 20 6 chr3 108851734 108852945 -118671633 + L1P4 LINE L1 4508 5733 -441 3493 169 61 1 chr3 108853147 108854073 -118670505 + L1PBa LINE L1 2557 3538 -3324 675 185 38 0 chr3 108854073 108854230 -118670348 + Tigger1 DNA MER2_type 80 242 -2176 948 289 58 24 chr3 108857138 108857606 -118666972 - LTR16C LTR ERVL -7 484 1 1944 92 14 3 chr3 108908373 108908657 -118615921 - HUERS-P3b LTR ERV1 -4008 3410 3124 246 167 24 0 chr3 108908657 108908699 -118615879 - LTR22A LTR ERVK 0 458 416 * 2284 180 30 2 chr3 108908689 108909090 -118615488 + LTR8 LTR ERV1 30 441 -250 11536 127 34 21 chr3 108909090 108910962 -118613616 - HUERS-P3b LTR ERV1 -4776 2642 747 21 0 0 0 chr3 108912015 108912036 -118612542 + AT_rich Low_complexity Low_complexity 1 21 0 1666 64 5 0 chr3 108912308 108912511 -118612067 - AluSx SINE Alu -108 204 1 21 36 0 0 chr3 108912810 108912838 -118611740 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr3 108913164 108913196 -118611382 + AT_rich Low_complexity Low_complexity 1 32 0 381 22 0 0 chr3 108913606 108913652 -118610926 + (CA)n Simple_repeat Simple_repeat 2 47 0 544 209 0 0 chr3 108913900 108914015 -118610563 - L1MA10 LINE L1 -4 6330 6216 190 327 74 6 chr3 108914688 108914850 -118609728 - L2 LINE L2 -36 3277 3105 23 54 0 0 chr3 108915159 108915196 -118609382 + AT_rich Low_complexity Low_complexity 1 37 0 1540 276 87 24 chr3 108915352 108916137 -118608441 - Charlie7 DNA MER1_type -440 2172 1339 296 199 15 137 chr3 108916171 108916302 -118608276 - Charlie7 DNA MER1_type -1619 993 879 6314 154 41 35 chr3 108916355 108918663 -118605915 - L1MA4A LINE L1 -11 6994 4703 849 208 20 35 chr3 108918659 108918861 -118605717 - L1MA4A LINE L1 -6650 199 1 * 540 296 35 35 chr3 108918926 108919186 -118605392 - MIR SINE MIR 0 262 3 2061 212 48 19 chr3 108919202 108919678 -118604900 + MER89 LTR ERV1 46 535 -24 1339 249 31 6 chr3 108920422 108920775 -118603803 - L1ME1 LINE L1 -5 6161 5800 333 270 0 0 chr3 108920802 108920891 -118603687 + LTR41 LTR ERVL 66 154 -619 299 267 76 9 chr3 108921129 108921234 -118603344 + LTR41 LTR ERVL 510 621 -152 1880 166 0 0 chr3 108921447 108921763 -118602815 - AluSx SINE Alu 0 316 1 1075 249 55 4 chr3 108921992 108922249 -118602329 + L1 LINE L1 5 274 -5617 3586 191 19 21 chr3 108922307 108923104 -118601474 + L1 LINE L1 3017 3811 -2159 864 181 0 0 chr3 108923104 108923253 -118601325 + AluJb SINE Alu 164 312 0 1057 147 0 0 chr3 108923255 108923425 -118601153 + L1 LINE L1 4774 4943 -1027 2086 114 19 56 chr3 108923442 108923818 -118600760 - L1PA16 LINE L1 -301 5865 5504 2132 325 25 12 chr3 108923834 108924658 -118599920 + ERVL LTR ERVL 4543 5377 -387 2094 134 50 34 chr3 108924688 108925046 -118599532 - THE1B LTR MaLR 0 364 1 546 281 20 13 chr3 108925357 108925510 -118599068 + LTR41 LTR ERVL 22 175 -598 323 283 97 53 chr3 108925755 108926002 -118598576 + LTR41 LTR ERVL 510 767 -6 1793 248 46 50 chr3 108926008 108926815 -118597763 - L1ME1 LINE L1 -363 5803 5003 606 97 0 0 chr3 108926815 108926908 -118597670 - L1MA5A LINE L1 0 6297 6205 1793 248 46 50 chr3 108926908 108927186 -118597392 - L1ME1 LINE L1 -1163 5003 4725 2439 237 100 17 chr3 108927189 108928125 -118596453 - L1ME1 LINE L1 -1492 4654 3641 232 147 0 0 chr3 108928579 108928613 -118595965 - tRNA-Cys-TGC tRNA tRNA -38 37 4 360 304 66 36 chr3 108929320 108929623 -118594955 + L1M4 LINE L1 3908 4219 -1927 33 56 0 0 chr3 108929769 108929823 -118594755 + AT_rich Low_complexity Low_complexity 1 54 0 1808 108 0 0 chr3 108929902 108930133 -118594445 + AluSx SINE Alu 1 231 -81 938 166 18 6 chr3 108930174 108930337 -118594241 + L1PA16 LINE L1 5993 6157 -9 353 303 11 11 chr3 108930686 108930775 -118593803 - MIR SINE MIR -160 102 14 454 276 25 49 chr3 108932343 108932506 -118592072 + L2 LINE L2 2277 2435 -879 5452 253 21 15 chr3 108932793 108935304 -118589274 - L1PA12 LINE L1 -2848 4736 2198 235 292 62 21 chr3 108935567 108935663 -118588915 - L1PA12 LINE L1 -5399 2182 2083 495 326 120 44 chr3 108935817 108936357 -118588221 - L1PA12 LINE L1 -6206 1368 788 21 0 0 0 chr3 108936365 108936386 -118588192 + AT_rich Low_complexity Low_complexity 1 21 0 262 350 57 51 chr3 108936466 108936623 -118587955 - MER5A DNA MER1_type 0 189 32 4508 61 24 0 chr3 108936843 108937420 -118587158 + LTR10C LTR ERV1 1 591 0 3427 150 98 34 chr3 108937768 108938449 -118586129 - LTR8A LTR ERV1 0 727 3 2283 193 26 75 chr3 108939434 108940077 -118584501 - LTR9 LTR ERV1 0 612 1 21 36 0 0 chr3 108940586 108940614 -118583964 + AT_rich Low_complexity Low_complexity 1 28 0 268 234 269 21 chr3 108941810 108941955 -118582623 - MER5A DNA MER1_type -3 186 6 191 365 71 30 chr3 108941980 108942177 -118582401 - L2 LINE L2 -408 2906 2702 922 235 19 8 chr3 108942624 108942887 -118581691 - L1ME LINE L1 -686 5480 5218 11294 209 20 19 chr3 108942888 108944558 -118580020 + ERVL-B1 LTR ERVL 2723 4397 -1367 2324 100 3 0 chr3 108944558 108944858 -118579720 + AluSp SINE Alu 1 301 -12 11294 209 20 19 chr3 108944858 108945513 -118579065 + ERVL-B1 LTR ERVL 4397 5050 -714 1606 205 46 11 chr3 108945512 108945883 -118578695 + ERVL-B1 LTR ERVL 5236 5619 -145 * 1509 216 26 7 chr3 108945907 108946213 -118578365 + MLT2B1 LTR ERVL 7 318 -202 261 0 0 0 chr3 108946542 108946571 -118578007 + (A)n Simple_repeat Simple_repeat 1 29 0 38 0 0 0 chr3 108946858 108946896 -118577682 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr3 108947252 108947283 -118577295 + AT_rich Low_complexity Low_complexity 1 31 0 261 0 0 0 chr3 108947531 108947560 -118577018 + (A)n Simple_repeat Simple_repeat 1 29 0 35 0 0 0 chr3 108947850 108947885 -118576693 + AT_rich Low_complexity Low_complexity 1 35 0 1538 179 32 61 chr3 108948664 108948835 -118575743 - MER2 DNA MER2_type -1 344 186 3597 196 37 53 chr3 108948835 108949805 -118574773 + LTR5 LTR ERVK 1 955 -14 1538 179 32 61 chr3 108949805 108949979 -118574599 - MER2 DNA MER2_type -159 186 9 227 186 0 0 chr3 108950030 108950073 -118574505 + (TATATG)n Simple_repeat Simple_repeat 2 44 0 6442 140 38 36 chr3 108950120 108951347 -118573231 - Tigger3b DNA MER2_type 0 1231 2 25 0 0 0 chr3 108951762 108951787 -118572791 + AT_rich Low_complexity Low_complexity 1 25 0 1300 151 5 9 chr3 108951799 108952011 -118572567 - AluJo SINE Alu -20 292 82 874 136 9 0 chr3 108952054 108952208 -118572370 - L1PA13 LINE L1 -215 5948 5791 7347 102 3 23 chr3 108954250 108955329 -118569249 + MER11C LTR ERVK 1 1057 -14 235 325 51 56 chr3 108955512 108955709 -118568869 - L2 LINE L2 -518 2796 2601 224 305 84 71 chr3 108955700 108955854 -118568724 - MER5B DNA MER1_type -10 168 13 * 239 326 120 37 chr3 108956750 108956992 -118567586 - L2 LINE L2 -1177 2137 1876 4055 105 2 26 chr3 108957120 108957746 -118566832 + L1PA13 LINE L1 5534 6144 -19 312 292 12 31 chr3 108957784 108957945 -118566633 + A-rich Low_complexity Low_complexity 2 159 0 201 74 0 0 chr3 108958416 108958443 -118566135 + (TTAAA)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr3 108958881 108958902 -118565676 + AT_rich Low_complexity Low_complexity 1 21 0 293 258 269 0 chr3 108959905 108959998 -118564580 - MER5A DNA MER1_type -2 187 70 1493 124 71 124 chr3 108960013 108960172 -118564406 + AluSx SINE Alu 7 142 -170 2316 99 0 3 chr3 108960172 108960475 -118564103 + AluSp SINE Alu 5 306 -7 1493 124 71 124 chr3 108960475 108960637 -118563941 + AluSx SINE Alu 142 311 -1 596 243 8 26 chr3 108961369 108961633 -118562945 - L1MC/D LINE L1 -751 5395 5223 2297 189 9 43 chr3 108961634 108962095 -118562483 + ERVL LTR ERVL 2716 3160 -2604 21 0 0 0 chr3 108962226 108962247 -118562331 + AT_rich Low_complexity Low_complexity 1 21 0 21522 175 37 32 chr3 108962247 108969808 -118554770 - L1MA3 LINE L1 -8 7716 112 2392 93 0 6 chr3 108969808 108970120 -118554458 - AluY SINE Alu -1 310 1 21522 175 37 32 chr3 108970120 108970218 -118554360 - L1MA3 LINE L1 -7612 112 16 210 37 0 0 chr3 108970289 108970316 -118554262 + (TTTTTA)n Simple_repeat Simple_repeat 2 28 0 7529 38 0 0 chr3 108970320 108971397 -118553181 - L1PA3 LINE L1 -1 6154 5078 246 62 0 0 chr3 108971791 108971823 -118552755 + (TATATG)n Simple_repeat Simple_repeat 5 36 0 * 312 27 0 0 chr3 108971822 108971859 -118552719 + (GA)n Simple_repeat Simple_repeat 2 38 0 24 67 0 0 chr3 108972028 108972073 -118552505 + AT_rich Low_complexity Low_complexity 1 45 0 228 232 0 0 chr3 108972604 108972660 -118551918 + L1ME LINE L1 5794 5849 -317 24 67 0 0 chr3 108972792 108972837 -118551741 + AT_rich Low_complexity Low_complexity 1 45 0 21824 184 27 15 chr3 108973134 108977338 -118547240 + L1PA11 LINE L1 1 5113 -2499 2068 143 0 3 chr3 108977338 108977645 -118546933 + AluSg SINE Alu 5 310 0 21824 184 27 15 chr3 108977645 108980164 -118544414 + L1PA11 LINE L1 5113 7602 -10 319 240 21 10 chr3 108980553 108980649 -118543929 + (TA)n Simple_repeat Simple_repeat 1 97 0 5622 141 23 11 chr3 108983203 108984115 -118540463 - MER49 LTR ERV1 0 923 1 2602 233 8 2 chr3 108984367 108984995 -118539583 - L1P LINE L1 -757 5389 4758 2338 156 96 6 chr3 108984998 108985454 -118539124 + L1PA16 LINE L1 5677 6165 0 223 329 45 49 chr3 108985948 108986194 -118538384 - L2 LINE L2 -1195 2119 1875 38 68 0 0 chr3 108987161 108987234 -118537344 + AT_rich Low_complexity Low_complexity 1 73 0 23 92 0 0 chr3 108987668 108987733 -118536845 + AT_rich Low_complexity Low_complexity 1 65 0 370 232 13 0 chr3 108988470 108988573 -118536005 - LTR8 LTR ERV1 -374 353 236 2150 158 90 89 chr3 108988598 108989185 -118535393 - LTR18B LTR ERVL 0 614 27 248 108 0 0 chr3 108989397 108989434 -118535144 - LTR8A LTR ERV1 -690 37 1 2271 110 0 7 chr3 108989578 108989886 -118534692 - AluSx SINE Alu -3 309 4 187 211 115 0 chr3 108989903 108989955 -118534623 + L3 LINE CR1 848 905 -672 3347 227 75 41 chr3 108989966 108991003 -118533575 - LTR28 LTR ERV1 0 1736 1 748 203 84 30 chr3 108991477 108991772 -118532806 + MER34C LTR ERV1 60 413 -172 1254 210 59 35 chr3 108991902 108992427 -118532151 + MER31-int LTR ERV1 883 2985 -3346 19304 164 33 28 chr3 108992691 108993921 -118530657 + L1M1 LINE L1 18 1240 -6325 257 0 0 29 chr3 108993921 108993955 -118530623 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 1614 120 8 13 chr3 108993957 108994191 -118530387 - AluSq SINE Alu -31 282 50 342 122 0 0 chr3 108994191 108994240 -118530338 + AluJ/FLAM SINE Alu 25 73 -229 19304 164 33 28 chr3 108994240 108995384 -118529194 + L1M1 LINE L1 1240 2377 -5188 1930 165 3 0 chr3 108995384 108995681 -118528897 + AluSx SINE Alu 1 298 -14 19304 164 33 28 chr3 108995681 108996920 -118527658 + L1M1 LINE L1 2377 3704 -3861 4418 194 30 3 chr3 108997026 108997948 -118526630 + L1M1 LINE L1 4781 5727 -1838 297 204 8 76 chr3 108997948 108998080 -118526498 + MER31-int LTR ERV1 3494 3616 -2715 207 0 0 0 chr3 108998103 108998126 -118526452 + (T)n Simple_repeat Simple_repeat 1 23 0 441 277 24 47 chr3 108998388 108998601 -118525977 + MER31-int LTR ERV1 2476 2683 -2253 369 233 58 0 chr3 108998726 108998812 -118525766 + MER31-int LTR ERV1 4069 4159 -777 309 319 71 71 chr3 109000611 109000780 -118523798 + MER5A DNA MER1_type 10 178 -11 27 29 0 0 chr3 109003078 109003112 -118521466 + AT_rich Low_complexity Low_complexity 1 34 0 18399 180 38 18 chr3 109003160 109006247 -118518331 + L1PB1 LINE L1 27 3050 -4515 1266 148 5 0 chr3 109006247 109006463 -118518115 + L1PB1 LINE L1 7354 7570 0 18399 180 38 18 chr3 109006463 109006569 -118518009 + L1PB1 LINE L1 3050 3152 -4413 254 95 24 0 chr3 109006569 109006611 -118517967 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 18399 180 38 18 chr3 109006611 109007264 -118517314 + L1PB1 LINE L1 3152 3956 -3609 4016 168 23 1 chr3 109007265 109008009 -118516569 + L1MA2 LINE L1 4723 5482 -2083 2013 108 45 7 chr3 109008009 109008396 -118516182 + LTR7 LTR ERV1 1 450 0 3342 181 28 4 chr3 109008397 109009078 -118515500 + L1MA2 LINE L1 5479 6175 -1390 3683 34 23 2 chr3 109009078 109009589 -118514989 + MER11A LTR ERVK 1 617 -649 2487 86 30 16 chr3 109009584 109009956 -118514622 + MER11A LTR ERVK 890 1266 0 * 5828 152 8 12 chr3 109009956 109011335 -118513243 + L1MA2 LINE L1 6170 7545 -178 6705 77 34 0 chr3 109011335 109012298 -118512280 - L1PA8 LINE L1 -10 6162 5193 5828 152 8 12 chr3 109012298 109012399 -118512179 + L1MA2 LINE L1 7545 7645 -78 1205 145 13 13 chr3 109012399 109012632 -118511946 + L1MA2 LINE L1 6069 6303 -1 306 179 0 0 chr3 109012767 109012823 -118511755 - L1MC4 LINE L1 -1339 6703 6648 22 0 0 0 chr3 109012830 109012852 -118511726 + AT_rich Low_complexity Low_complexity 1 22 0 5831 119 26 13 chr3 109012853 109014554 -118510024 - L1PA12 LINE L1 -15 6153 4440 528 248 20 27 chr3 109014554 109014703 -118509875 - LTR7 LTR ERV1 0 450 303 10340 203 18 12 chr3 109015005 109017176 -118507402 - HERVH LTR ERV1 0 7713 5530 462 115 0 11 chr3 109017183 109017294 -118507284 + L1PA4 LINE L1 6068 6155 0 5426 232 62 86 chr3 109017294 109020067 -118504511 - HERVH LTR ERV1 -5006 2707 1 567 250 73 29 chr3 109020067 109020271 -118504307 - LTR7 LTR ERV1 0 450 238 602 186 0 0 chr3 109020525 109020654 -118503924 - L1P LINE L1 -1702 4444 4316 24 0 0 0 chr3 109020660 109020684 -118503894 + AT_rich Low_complexity Low_complexity 1 24 0 197 81 0 27 chr3 109020687 109020724 -118503854 + (TAAAAA)n Simple_repeat Simple_repeat 6 41 0 38 75 0 0 chr3 109020739 109020819 -118503759 + AT_rich Low_complexity Low_complexity 1 80 0 22 56 0 0 chr3 109021492 109021528 -118503050 + AT_rich Low_complexity Low_complexity 1 36 0 758 199 124 31 chr3 109021741 109022032 -118502546 + MER51-int LTR ERV1 2626 2943 -1993 472 267 55 0 chr3 109022040 109022186 -118502392 - MSTB1 LTR MaLR -257 175 22 1771 241 36 16 chr3 109022218 109022711 -118501867 + MER51-int LTR ERV1 3869 4371 -565 419 278 83 35 chr3 109022698 109022842 -118501736 + MER51-int LTR ERV1 3780 3930 -941 * 440 307 32 77 chr3 109022996 109023335 -118501243 + MER51-int LTR ERV1 7002 7325 -491 1399 207 67 3 chr3 109023338 109023667 -118500911 + MER93b LTR ERV1 2 351 -22 294 279 10 10 chr3 109023676 109023780 -118500798 + (TA)n Simple_repeat Simple_repeat 1 104 0 505 103 0 13 chr3 109026499 109026577 -118498001 - AluSp/q SINE Alu -10 303 227 336 89 0 0 chr3 109026577 109026622 -118497956 - Alu SINE Alu -258 45 1 251 314 58 51 chr3 109026756 109026912 -118497666 - MER5B DNA MER1_type -1 177 21 2864 175 7 0 chr3 109028759 109029409 -118495169 + L1M1 LINE L1 4776 5431 -744 * 6863 139 13 45 chr3 109029408 109030577 -118494001 - MSTA-int LTR MaLR -447 1133 3 1729 148 121 67 chr3 109030579 109030985 -118493593 - MSTA LTR MaLR 0 428 1 2323 193 34 24 chr3 109031506 109032409 -118492169 - L1P4 LINE L1 -491 5675 4766 207 0 0 0 chr3 109033154 109033177 -118491401 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 266 253 11 11 chr3 109033390 109033485 -118491093 + (TA)n Simple_repeat Simple_repeat 1 95 0 2182 100 10 3 chr3 109033677 109033968 -118490610 + AluSq SINE Alu 1 293 -20 261 0 0 0 chr3 109035036 109035065 -118489513 + (TA)n Simple_repeat Simple_repeat 2 30 0 1685 237 51 111 chr3 109035137 109035890 -118488688 - LTR8 LTR ERV1 0 691 1 2444 64 0 3 chr3 109036270 109036568 -118488010 + AluY SINE Alu 1 297 -14 609 268 100 17 chr3 109036924 109037163 -118487415 + MER34C LTR ERV1 155 413 -172 1123 150 31 92 chr3 109037319 109037613 -118486965 + MER57-int LTR ERV1 3575 3850 -1086 1971 195 82 2 chr3 109037620 109038020 -118486558 - MSTB1 LTR MaLR 0 432 1 2014 232 34 16 chr3 109038022 109038527 -118486051 + MER57-int LTR ERV1 3858 4371 -565 515 259 6 78 chr3 109038511 109038639 -118485939 + MER57-int LTR ERV1 3777 3892 -979 * 1423 111 44 31 chr3 109038639 109038865 -118485713 - MER30 DNA MER1_type -1 229 1 515 259 6 78 chr3 109038865 109038902 -118485676 + MER57-int LTR ERV1 3892 3930 -941 271 312 21 28 chr3 109039031 109039172 -118485406 + MER57-int LTR ERV1 6974 7113 -703 221 193 18 0 chr3 109039216 109039273 -118485305 + (TAAA)n Simple_repeat Simple_repeat 2 59 0 1448 204 35 43 chr3 109039415 109039664 -118484914 + MER93b LTR ERV1 3 250 -123 2049 41 0 0 chr3 109039664 109039910 -118484668 + L1PA5 LINE L1 5908 6153 -1 1448 204 35 43 chr3 109039910 109040033 -118484545 + MER93b LTR ERV1 250 372 -1 203 289 21 10 chr3 109040033 109040130 -118484448 + (TA)n Simple_repeat Simple_repeat 1 98 0 202 312 81 98 chr3 109042923 109043096 -118481482 + MER5B DNA MER1_type 6 175 -14 309 302 31 0 chr3 109043600 109043696 -118480882 + LTR67 LTR ERVL 97 195 -362 2238 94 13 10 chr3 109044332 109044641 -118479937 + AluSx SINE Alu 1 310 -2 2320 198 28 8 chr3 109046449 109047354 -118477224 - L1PA16 LINE L1 -491 5675 4754 1943 181 89 20 chr3 109047353 109047800 -118476778 + L1PA16 LINE L1 5678 6155 -11 * 1906 145 0 47 chr3 109048526 109048843 -118475735 + AluSx SINE Alu 3 304 -8 22 0 0 0 chr3 109049931 109049953 -118474625 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr3 109050188 109050230 -118474348 + AT_rich Low_complexity Low_complexity 1 42 0 25 20 0 59 chr3 109050328 109050379 -118474199 + AT_rich Low_complexity Low_complexity 1 48 0 8354 63 11 2 chr3 109050597 109051657 -118472921 - MER11C LTR ERVK -1 1070 1 381 227 0 11 chr3 109052443 109052531 -118472047 + MER57-int LTR ERV1 4271 4357 -579 415 299 14 20 chr3 109052536 109052683 -118471895 + MER57-int LTR ERV1 3785 3930 -941 * 426 287 7 28 chr3 109052657 109052800 -118471778 + MER57-int LTR ERV1 4565 4704 -232 2010 117 27 7 chr3 109052812 109053112 -118471466 - AluSx SINE Alu -6 306 1 359 258 55 8 chr3 109053127 109053255 -118471323 + MER57-int LTR ERV1 6800 6933 -604 21 71 0 0 chr3 109053506 109053548 -118471030 + AT_rich Low_complexity Low_complexity 1 42 0 1115 148 16 66 chr3 109053551 109053639 -118470939 + MER93b LTR ERV1 25 116 -257 5653 79 51 0 chr3 109053639 109054554 -118470024 - L1PA8 LINE L1 -2 6170 5177 1115 148 16 66 chr3 109054554 109054709 -118469869 + MER93b LTR ERV1 116 256 -117 216 182 18 36 chr3 109054717 109054772 -118469806 + (CATATA)n Simple_repeat Simple_repeat 3 56 0 241 331 82 38 chr3 109057384 109057568 -118467010 - L2 LINE L2 -520 2794 2603 205 362 14 0 chr3 109057649 109057718 -118466860 + MER5A DNA MER1_type 107 176 -13 247 256 274 17 chr3 109059624 109059741 -118464837 - MER5A DNA MER1_type -2 187 41 2044 144 126 5 chr3 109060175 109060557 -118464021 + MSTA LTR MaLR 1 428 0 1951 251 13 2 chr3 109060557 109061028 -118463550 + ERVL LTR ERVL 3540 4015 -1749 1233 209 15 98 chr3 109061029 109061427 -118463151 + MLT1A1 LTR MaLR 1 365 0 612 249 26 10 chr3 109061427 109061620 -118462958 + MLT1A1-int LTR MaLR 1 196 -1539 2614 241 34 17 chr3 109061745 109062392 -118462186 + MLT1A1-int LTR MaLR 1078 1735 0 637 242 11 28 chr3 109062455 109062637 -118461941 + MLT1A2 LTR MaLR 196 374 0 2152 194 40 16 chr3 109062690 109063218 -118461360 + ERVL LTR ERVL 4049 4631 -1133 5450 79 9 0 chr3 109063254 109064026 -118460552 - L1PA8 LINE L1 0 6172 5394 666 208 19 0 chr3 109064059 109064218 -118460360 + MER93b LTR ERV1 100 261 -112 219 246 0 0 chr3 109064261 109064318 -118460260 + (CATA)n Simple_repeat Simple_repeat 4 60 0 22 35 0 0 chr3 109066701 109066730 -118457848 + AT_rich Low_complexity Low_complexity 1 29 0 2080 94 43 8 chr3 109066953 109067329 -118457249 - LTR7 LTR ERV1 -2 448 1 1032 88 82 28 chr3 109067329 109067511 -118457067 - HERVH LTR ERV1 0 7713 7522 * 7724 108 11 34 chr3 109067507 109069721 -118454857 - HERVH LTR ERV1 -2935 4778 2679 5436 152 12 41 chr3 109069821 109071418 -118453160 - HERVH LTR ERV1 -6033 1680 1 2220 88 197 3 chr3 109071420 109071795 -118452783 - LTR7 LTR ERV1 -2 448 1 23 0 0 0 chr3 109071807 109071830 -118452748 + AT_rich Low_complexity Low_complexity 1 23 0 221 342 58 58 chr3 109071908 109072063 -118452515 + MER5A DNA MER1_type 17 171 -18 282 103 0 0 chr3 109073797 109073836 -118450742 + LTR9B LTR ERV1 606 644 0 335 216 41 52 chr3 109073836 109073933 -118450645 + HUERS-P3b LTR ERV1 1 96 -7322 626 175 0 18 chr3 109073936 109074050 -118450528 + HUERS-P3b LTR ERV1 409 520 -6898 891 199 5 16 chr3 109124078 109124264 -118400314 - MER34 LTR ERV1 -347 195 12 2439 34 40 0 chr3 109124503 109124799 -118399779 - AluY SINE Alu -3 308 1 608 332 68 35 chr3 109124814 109125419 -118399159 + L1MC4a LINE L1 5278 5902 -1906 243 306 41 0 chr3 109125465 109125563 -118399015 - MARNA DNA Mariner -340 246 145 288 247 11 45 chr3 109125954 109126043 -118398535 - MARNA DNA Mariner -355 231 146 221 254 34 34 chr3 109126234 109126293 -118398285 + L3b LINE CR1 1282 1340 -243 292 353 43 67 chr3 109127457 109127701 -118396877 + L2 LINE L2 2285 2522 -792 2328 101 0 0 chr3 109127701 109128008 -118396570 - AluSx SINE Alu -4 308 2 292 353 43 67 chr3 109128008 109128063 -118396515 + L2 LINE L2 2522 2577 -737 349 359 57 53 chr3 109128069 109128331 -118396247 - L1M4b LINE L1 -6466 393 131 22 35 0 0 chr3 109128564 109128593 -118395985 + AT_rich Low_complexity Low_complexity 1 29 0 2072 125 3 7 chr3 109130310 109130607 -118393971 + AluSg SINE Alu 4 299 -11 25 0 0 0 chr3 109131853 109131878 -118392700 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr3 109132287 109132317 -118392261 + AT_rich Low_complexity Low_complexity 1 30 0 433 240 208 10 chr3 109132544 109132736 -118391842 + MLT1H1 LTR MaLR 291 520 -35 405 235 16 0 chr3 109132743 109132865 -118391713 + L1P LINE L1 4247 4373 -1773 * 6168 177 17 8 chr3 109132858 109135026 -118389552 + L1PB1 LINE L1 3959 6149 -2 511 324 104 43 chr3 109135545 109135940 -118388638 + HAL1b LINE L1 66 484 -864 281 73 0 113 chr3 109136033 109136384 -118388194 + (TA)n Simple_repeat Simple_repeat 1 311 0 1037 157 0 0 chr3 109136505 109136658 -118387920 - AluSg/x SINE Alu -26 286 134 189 391 20 13 chr3 109136720 109136871 -118387707 + L2 LINE L2 2734 2885 -429 1689 285 114 33 chr3 109137600 109139474 -118385104 + L1MC/D LINE L1 74 2201 -4195 1416 222 61 15 chr3 109139508 109139851 -118384727 - MLT1A2 LTR MaLR -1 373 15 1136 186 45 7 chr3 109139852 109140121 -118384457 - L1MC/D LINE L1 -3224 2991 2713 1006 264 217 17 chr3 109140128 109140935 -118383643 + L1MC/D LINE L1 2988 3955 -2260 1580 168 4 11 chr3 109141384 109141664 -118382914 + L1MC1 LINE L1 6043 6320 -13 30 0 0 0 chr3 109141674 109141704 -118382874 + AT_rich Low_complexity Low_complexity 1 30 0 820 223 16 11 chr3 109146406 109146590 -118377988 - AluJb SINE Alu -3 309 125 380 365 48 14 chr3 109146627 109147043 -118377535 + L1MC/D LINE L1 4616 5045 -1170 423 308 118 31 chr3 109147234 109147381 -118377197 + L1MC/D LINE L1 5336 5469 -2408 264 59 0 0 chr3 109147381 109147415 -118377163 + (CA)n Simple_repeat Simple_repeat 2 35 0 423 308 118 31 chr3 109147415 109147776 -118376802 + L1MC/D LINE L1 5469 5888 -1989 21 57 0 0 chr3 109148302 109148337 -118376241 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 109148606 109148629 -118375949 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 109148725 109148746 -118375832 + AT_rich Low_complexity Low_complexity 1 21 0 622 348 35 43 chr3 109149848 109150365 -118374213 + L2 LINE L2 2285 2797 -517 373 338 93 39 chr3 109150439 109150794 -118373784 - MLT1J2 LTR MaLR 0 450 77 697 326 86 3 chr3 109151083 109151384 -118373194 - HERV16 LTR ERVL -2155 2841 2516 610 120 11 0 chr3 109151510 109151602 -118372976 + MSTB1 LTR MaLR 340 432 0 21 0 0 0 chr3 109152171 109152192 -118372386 + AT_rich Low_complexity Low_complexity 1 21 0 182 162 0 0 chr3 109153019 109153056 -118371522 + T-rich Low_complexity Low_complexity 1 37 0 275 274 0 0 chr3 109153701 109153763 -118370815 - HERV16 LTR ERVL -3368 2396 2335 1786 153 150 13 chr3 109153855 109154228 -118370350 + MSTA LTR MaLR 1 424 -4 440 168 0 59 chr3 109157073 109157174 -118367404 + MLT1D LTR MaLR 13 107 -398 184 204 136 0 chr3 109159031 109159075 -118365503 - L2 LINE L2 0 3313 3264 29 47 0 0 chr3 109159911 109159954 -118364624 + AT_rich Low_complexity Low_complexity 1 43 0 5022 96 20 30 chr3 109160561 109161125 -118363453 - L1PB1 LINE L1 0 6151 5594 2273 72 28 0 chr3 109161125 109161415 -118363163 - AluY SINE Alu -13 298 1 5022 96 20 30 chr3 109161415 109161629 -118362949 - L1PB1 LINE L1 -557 5594 5380 23 0 0 0 chr3 109161815 109161838 -118362740 + AT_rich Low_complexity Low_complexity 1 23 0 618 285 110 13 chr3 109161980 109162208 -118362370 + MIR SINE MIR 6 255 -7 1798 139 0 7 chr3 109162219 109162492 -118362086 - AluSx SINE Alu -39 273 3 408 269 89 121 chr3 109162779 109163442 -118361136 - L1MC4a LINE L1 -155 7887 7166 581 102 0 0 chr3 109163600 109163688 -118360890 - L1PA8 LINE L1 0 6172 6085 731 45 0 0 chr3 109163688 109163776 -118360802 + L1P3 LINE L1 5543 5630 -524 264 288 24 8 chr3 109163770 109163895 -118360683 - L1MC4 LINE L1 -793 7249 7123 * 34 55 0 0 chr3 109164399 109164454 -118360124 + AT_rich Low_complexity Low_complexity 1 55 0 260 267 70 12 chr3 109164744 109164830 -118359748 - MIR SINE MIR -56 206 116 205 272 25 37 chr3 109165154 109165219 -118359359 + MIR SINE MIR 153 218 -44 2448 208 13 2 chr3 109165219 109165686 -118358892 + MER70A LTR ERVL 1 472 0 205 272 25 37 chr3 109165686 109165701 -118358877 + MIR SINE MIR 218 232 -30 268 222 0 16 chr3 109165800 109165863 -118358715 - L2 LINE L2 -5 3267 3206 861 289 118 17 chr3 109165973 109166504 -118358074 + MLT1G1 LTR MaLR 3 555 0 185 0 0 39 chr3 109166552 109166578 -118358000 + (GGAAA)n Simple_repeat Simple_repeat 5 29 0 924 242 118 6 chr3 109167392 109167706 -118356872 - L1ME3 LINE L1 -205 5957 5609 2127 260 70 50 chr3 109167712 109168779 -118355799 - MER97b DNA MER1_type? -1 1089 1 3323 106 47 4 chr3 109168965 109169455 -118355123 + MER9 LTR ERVK 1 511 0 4078 152 28 58 chr3 109169611 109170661 -118353917 - L1M2 LINE L1 -743 5403 4456 2736 240 33 14 chr3 109170668 109171926 -118352652 - L1M2 LINE L1 -4200 2968 1657 355 321 62 26 chr3 109172311 109172504 -118352074 - MIR SINE MIR -31 231 32 231 363 0 20 chr3 109172564 109172666 -118351912 - MIR3 SINE MIR -32 176 77 2786 140 68 25 chr3 109173481 109174027 -118350551 - Tigger3(Golem) DNA MER2_type 0 3029 1 230 220 42 136 chr3 109174052 109174170 -118350408 + MIR3 SINE MIR 101 207 -1 306 50 0 0 chr3 109175282 109175322 -118349256 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 947 308 54 23 chr3 109175423 109175809 -118348769 - L2 LINE L2 0 3313 2916 893 314 83 14 chr3 109176119 109176676 -118347902 + L1ME3 LINE L1 5353 5947 -215 24 0 0 0 chr3 109176801 109176825 -118347753 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr3 109177349 109177371 -118347207 + AT_rich Low_complexity Low_complexity 1 22 0 401 235 82 0 chr3 109178661 109178746 -118345832 - MER81 DNA DNA -22 92 1 285 203 16 31 chr3 109178856 109178920 -118345658 - 7SK RNA RNA -130 63 1 794 181 0 39 chr3 109180379 109180451 -118344127 - MSTB LTR MaLR -277 149 76 1822 125 96 34 chr3 109180451 109180804 -118343774 + THE1C LTR MaLR 1 375 0 794 181 0 39 chr3 109180804 109180886 -118343692 - MSTB LTR MaLR -350 76 1 1765 169 0 11 chr3 109181172 109181451 -118343127 + AluSx SINE Alu 1 276 -36 208 121 0 0 chr3 109182575 109182608 -118341970 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 288 314 9 29 chr3 109183410 109183515 -118341063 + MER5A DNA MER1_type 85 187 -2 383 256 72 0 chr3 109183618 109183743 -118340835 - MER69 DNA AcHobo -9 2517 2384 613 150 45 95 chr3 109184967 109185167 -118339411 + MLT1D LTR MaLR 5 194 -311 977 218 45 5 chr3 109185202 109185422 -118339156 + MLT1D LTR MaLR 277 505 0 1986 129 0 0 chr3 109185566 109185845 -118338733 - AluSx SINE Alu -33 279 1 2726 214 30 10 chr3 109185978 109186570 -118338008 + MER77 LTR ERV1 2 605 0 227 370 130 6 chr3 109186613 109186775 -118337803 + MIR3 SINE MIR 16 197 -11 243 313 40 0 chr3 109188613 109188712 -118335866 - L2 LINE L2 -14 3299 3197 733 281 152 30 chr3 109189041 109189694 -118334884 + L2 LINE L2 2575 3309 -4 298 216 279 9 chr3 109190308 109190419 -118334159 + L2 LINE L2 3173 3313 0 26 0 0 0 chr3 109190622 109190648 -118333930 + AT_rich Low_complexity Low_complexity 1 26 0 270 0 0 0 chr3 109191416 109191446 -118333132 + (TG)n Simple_repeat Simple_repeat 2 31 0 903 302 24 4 chr3 109192166 109192421 -118332157 + MIR SINE MIR 1 260 -2 1756 177 54 33 chr3 109192663 109193052 -118331526 - LTR52 LTR ERVL -21 400 4 24 32 0 0 chr3 109193516 109193547 -118331031 + AT_rich Low_complexity Low_complexity 1 31 0 200 233 0 0 chr3 109195920 109195963 -118328615 + (TTA)n Simple_repeat Simple_repeat 1 43 0 21 0 0 0 chr3 109196540 109196561 -118328017 + AT_rich Low_complexity Low_complexity 1 21 0 350 213 31 102 chr3 109196832 109196959 -118327619 + MIR SINE MIR 117 234 -28 3100 163 42 26 chr3 109197629 109198318 -118326260 - Charlie1 DNA MER1_type 0 2761 2062 816 113 28 14 chr3 109198319 109198460 -118326118 + Ricksha DNA DNA 2 144 -1037 4844 134 31 11 chr3 109198464 109199380 -118325198 + Ricksha DNA DNA 2350 3246 -13 350 279 8 70 chr3 109199572 109199701 -118324877 + L2 LINE L2 3185 3305 -8 2265 95 7 0 chr3 109201380 109201674 -118322904 + AluSp SINE Alu 1 296 -17 347 168 44 26 chr3 109202837 109202950 -118321628 + GA-rich Low_complexity Low_complexity 4 118 0 227 324 124 50 chr3 109203069 109203310 -118321268 + L3b LINE CR1 1241 1499 -84 453 314 93 30 chr3 109204128 109204364 -118320214 - MIR SINE MIR 0 262 12 197 208 0 19 chr3 109204680 109204733 -118319845 + (CATATA)n Simple_repeat Simple_repeat 6 57 0 262 304 148 26 chr3 109204934 109205049 -118319529 - MIR3 SINE MIR -35 173 45 455 245 13 21 chr3 109205242 109205367 -118319211 - MER5A DNA MER1_type -57 121 14 1360 124 15 0 chr3 109205697 109205899 -118318679 - L1MB2 LINE L1 -2 6169 5965 2030 122 7 20 chr3 109206011 109206315 -118318263 + AluSx SINE Alu 1 300 -12 345 102 0 97 chr3 109207118 109207304 -118317274 + (CCA)n Simple_repeat Simple_repeat 2 169 0 448 122 5 69 chr3 109207317 109207505 -118317073 + (CCA)n Simple_repeat Simple_repeat 3 178 0 270 152 25 51 chr3 109207510 109207589 -118316989 + (CACCAT)n Simple_repeat Simple_repeat 2 78 0 524 114 4 71 chr3 109207589 109207873 -118316705 + (CCA)n Simple_repeat Simple_repeat 1 264 0 478 113 0 72 chr3 109207899 109208093 -118316485 + (CCA)n Simple_repeat Simple_repeat 1 180 0 860 165 0 0 chr3 109208280 109208407 -118316171 + AluJo SINE Alu 1 127 -185 1009 184 0 6 chr3 109208708 109208876 -118315702 + AluJo SINE Alu 129 295 -17 27 29 0 0 chr3 109208881 109208915 -118315663 + AT_rich Low_complexity Low_complexity 1 34 0 2187 121 3 0 chr3 109210493 109210799 -118313779 + AluSx SINE Alu 1 307 -5 21 0 0 0 chr3 109210799 109210820 -118313758 + AT_rich Low_complexity Low_complexity 1 21 0 341 347 33 8 chr3 109210982 109211103 -118313475 - L2 LINE L2 -5 3267 3144 23 0 0 0 chr3 109212964 109212987 -118311591 + AT_rich Low_complexity Low_complexity 1 23 0 304 277 119 10 chr3 109213110 109213211 -118311367 - L2 LINE L2 -18 3295 3184 286 299 17 8 chr3 109213248 109213365 -118311213 - L1ME LINE L1 -292 5829 5711 369 0 0 0 chr3 109213903 109213944 -118310634 + (CA)n Simple_repeat Simple_repeat 1 41 0 347 183 14 14 chr3 109214342 109214413 -118310165 - MER92C LTR ERV1 0 554 484 407 228 11 22 chr3 109214541 109214633 -118309945 - MER92B LTR ERV1 -545 91 1 23 0 0 0 chr3 109215273 109215296 -118309282 + AT_rich Low_complexity Low_complexity 1 23 0 1017 258 114 42 chr3 109216388 109216953 -118307625 + MER45C DNA AcHobo 57 700 -253 5261 153 22 20 chr3 109216963 109217861 -118306717 + MER49 LTR ERV1 3 902 -21 870 221 111 23 chr3 109217898 109218115 -118306463 + MER45C DNA AcHobo 718 953 0 2133 184 117 20 chr3 109218212 109218701 -118305877 + LTR64 LTR ERVK 23 558 0 372 281 67 12 chr3 109219091 109219255 -118305323 + MIR SINE MIR 81 253 -9 952 230 74 0 chr3 109220533 109220750 -118303828 + MLT1A1 LTR MaLR 1 233 -132 503 158 2 14 chr3 109220742 109220837 -118303741 + MLT1A1 LTR MaLR 275 423 -5 * 197 222 56 0 chr3 109220845 109220899 -118303679 + MIR SINE MIR 84 140 -122 221 368 66 7 chr3 109221198 109221334 -118303244 - MIR3 SINE MIR -13 195 52 1666 158 18 7 chr3 109222068 109222340 -118302238 - AluJo SINE Alu -33 279 5 377 284 60 15 chr3 109222341 109222475 -118302103 - Charlie8 DNA MER1_type -2206 211 72 318 136 0 0 chr3 109222496 109222540 -118302038 - MIR3 SINE MIR -48 160 117 317 265 202 49 chr3 109223319 109223606 -118300972 - L1ME4a LINE L1 -201 5920 5590 245 307 62 66 chr3 109223612 109223677 -118300901 - L1ME4a LINE L1 -668 5574 5510 2226 101 10 0 chr3 109223677 109223973 -118300605 - AluSx SINE Alu -13 299 1 245 307 62 66 chr3 109223973 109224151 -118300427 - L1ME4a LINE L1 -732 5510 5332 856 270 91 20 chr3 109224990 109225286 -118299292 + Charlie2 DNA MER1_type 15 331 -2531 1453 223 231 35 chr3 109225310 109226092 -118298486 + Charlie2 DNA MER1_type 1908 2843 -19 361 231 64 0 chr3 109226480 109226558 -118298020 + MER5A DNA MER1_type 43 125 -64 423 0 0 0 chr3 109227154 109227201 -118297377 + (ATG)n Simple_repeat Simple_repeat 3 49 0 437 348 6 25 chr3 109227711 109227872 -118296706 - MER5A DNA MER1_type -28 161 4 521 294 12 12 chr3 109228713 109228876 -118295702 - MIR SINE MIR -55 207 45 2187 113 0 28 chr3 109229412 109229730 -118294848 - AluSx SINE Alu -3 309 1 833 206 59 0 chr3 109229769 109229939 -118294639 - MER5A DNA MER1_type -8 181 2 414 214 93 29 chr3 109230640 109230780 -118293798 + MER5A DNA MER1_type 9 157 -32 226 331 96 15 chr3 109231746 109231882 -118292696 + MIR3 SINE MIR 22 168 -40 25 31 0 0 chr3 109232151 109232183 -118292395 + AT_rich Low_complexity Low_complexity 1 32 0 284 282 74 55 chr3 109232258 109232421 -118292157 - MIR SINE MIR -48 214 49 2202 105 26 10 chr3 109232641 109232947 -118291631 + AluSx SINE Alu 1 311 -1 207 100 0 0 chr3 109233318 109233348 -118291230 + (T)n Simple_repeat Simple_repeat 1 30 0 238 321 103 38 chr3 109233446 109233630 -118290948 - MIR SINE MIR -21 241 46 1871 126 82 0 chr3 109233942 109234212 -118290366 + AluSx SINE Alu 1 292 -20 218 130 0 37 chr3 109234616 109234670 -118289908 + (TTTTC)n Simple_repeat Simple_repeat 1 52 0 2053 138 0 0 chr3 109234683 109234973 -118289605 - AluSx SINE Alu -19 293 4 22 0 0 0 chr3 109235144 109235166 -118289412 + AT_rich Low_complexity Low_complexity 1 22 0 201 132 0 0 chr3 109235771 109235809 -118288769 + (A)n Simple_repeat Simple_repeat 1 38 0 1520 174 131 19 chr3 109238101 109238346 -118286232 - MER63B DNA MER1_type -626 436 133 533 41 0 14 chr3 109238346 109238419 -118286159 + (CTATA)n Simple_repeat Simple_repeat 3 74 0 1520 174 131 19 chr3 109238419 109238547 -118286031 - MER63B DNA MER1_type -929 133 21 185 362 95 0 chr3 109239642 109239758 -118284820 + MIR3 SINE MIR 50 176 -32 591 188 8 31 chr3 109240143 109240271 -118284307 + MSTB1 LTR MaLR 308 432 0 203 302 0 16 chr3 109240895 109240958 -118283620 + CT-rich Low_complexity Low_complexity 5 66 0 397 230 67 118 chr3 109241309 109241427 -118283151 - MIR SINE MIR -81 181 73 1864 165 0 17 chr3 109241427 109241724 -118282854 + AluJb SINE Alu 1 292 -20 397 230 67 118 chr3 109241724 109241783 -118282795 - MIR SINE MIR -189 73 13 194 318 16 0 chr3 109242544 109242607 -118281971 + CT-rich Low_complexity Low_complexity 3 66 0 2040 134 3 10 chr3 109242647 109242960 -118281618 - AluSq SINE Alu -2 311 1 677 250 88 5 chr3 109243534 109243738 -118280840 + MIR SINE MIR 42 262 0 1045 104 22 50 chr3 109244297 109244479 -118280099 + AluJb SINE Alu 136 312 0 24 32 0 0 chr3 109244591 109244622 -118279956 + GC_rich Low_complexity Low_complexity 1 31 0 327 331 40 27 chr3 109245712 109245860 -118278718 - MER5A DNA MER1_type -2 187 38 267 242 32 0 chr3 109246106 109246168 -118278410 - L2 LINE L2 -8 3264 3201 2367 163 129 10 chr3 109247165 109247667 -118276911 - MER68 LTR ERV1 0 562 1 198 250 105 26 chr3 109248288 109248364 -118276214 - MER5B DNA MER1_type 0 178 97 432 261 162 8 chr3 109248529 109248677 -118275901 + MER5A DNA MER1_type 9 189 0 2295 105 0 0 chr3 109251567 109251863 -118272715 - AluSx SINE Alu -16 296 1 198 0 0 0 chr3 109251863 109251885 -118272693 + (T)n Simple_repeat Simple_repeat 1 22 0 2342 95 0 25 chr3 109252378 109252693 -118271885 - AluSg SINE Alu -3 307 1 186 43 0 0 chr3 109253445 109253468 -118271110 + (GA)n Simple_repeat Simple_repeat 2 24 0 1675 168 0 35 chr3 109253686 109253972 -118270606 + AluJb SINE Alu 13 288 -24 929 196 115 29 chr3 109254209 109254418 -118270160 + MIR SINE MIR 20 246 -16 972 304 106 52 chr3 109254580 109255155 -118269423 + L2 LINE L2 2153 2758 -556 224 319 116 29 chr3 109255177 109255315 -118269263 + L2 LINE L2 3159 3308 -5 21 0 0 0 chr3 109256168 109256189 -118268389 + AT_rich Low_complexity Low_complexity 1 21 0 1171 174 53 4 chr3 109256522 109256769 -118267809 - Tigger2 DNA MER2_type -3 2715 2457 3367 131 122 25 chr3 109256809 109257491 -118267087 - Tigger2 DNA MER2_type -1957 761 14 1523 173 39 20 chr3 109257492 109257798 -118266780 + AluJo SINE Alu 1 312 0 790 178 69 55 chr3 109259077 109259279 -118265299 + MER58A DNA MER1_type 1 205 -19 2343 84 7 3 chr3 109259590 109259889 -118264689 - AluSg SINE Alu -10 300 1 494 248 87 13 chr3 109260124 109260273 -118264305 + MIR SINE MIR 29 188 -74 2408 71 7 0 chr3 109260311 109260606 -118263972 + AluSp SINE Alu 1 297 -16 715 183 107 6 chr3 109260640 109260809 -118263769 - MLT1D LTR MaLR -8 497 312 2005 189 132 29 chr3 109260849 109261394 -118263184 + MER7C DNA MER2_type 2 602 0 247 211 110 92 chr3 109261899 109262008 -118262570 - L2 LINE L2 -4 3268 3158 507 266 130 5 chr3 109262061 109262253 -118262325 - MIR SINE MIR -34 228 13 701 146 57 6 chr3 109263040 109263198 -118261380 - L1MB4 LINE L1 0 6180 6015 2270 97 3 10 chr3 109263422 109263722 -118260856 + AluSx SINE Alu 1 298 -14 225 348 75 61 chr3 109263752 109264045 -118260533 - L2 LINE L2 -36 3236 2940 2284 113 52 22 chr3 109267626 109268033 -118256545 - MSTB1 LTR MaLR -13 419 1 2323 194 49 14 chr3 109268195 109268748 -118255830 - MER90 LTR ERV1 0 614 1 226 105 53 0 chr3 109268822 109268860 -118255718 + MIR3 SINE MIR 156 195 -13 306 224 47 47 chr3 109269201 109269286 -118255292 - MIR SINE MIR -152 110 26 204 265 10 98 chr3 109270182 109270284 -118254294 - MER5B DNA MER1_type 0 178 86 342 129 0 0 chr3 109270468 109270530 -118254048 + (TA)n Simple_repeat Simple_repeat 2 63 0 21 71 0 0 chr3 109275629 109275671 -118248907 + AT_rich Low_complexity Low_complexity 1 42 0 347 309 19 43 chr3 109276624 109276786 -118247792 - MIR SINE MIR -3 259 102 23 54 0 0 chr3 109277811 109277848 -118246730 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr3 109278300 109278333 -118246245 + AT_rich Low_complexity Low_complexity 1 33 0 429 333 40 16 chr3 109278347 109278537 -118246041 - MIR SINE MIR -27 235 40 185 114 86 0 chr3 109278866 109278901 -118245677 - MIR SINE MIR -98 164 127 302 265 49 0 chr3 109278911 109279013 -118245565 + MIR SINE MIR 109 215 -47 514 335 72 61 chr3 109279316 109279797 -118244781 - L2 LINE L2 0 3272 2720 619 199 48 0 chr3 109280926 109281072 -118243506 + MER58B DNA MER1_type 183 335 -6 419 190 78 106 chr3 109282683 109282862 -118241716 + MER69A DNA AcHobo 1 174 -3 217 258 138 38 chr3 109284195 109284354 -118240224 - L2 LINE L2 -214 3058 2884 609 284 103 30 chr3 109284661 109285090 -118239488 + L1MC4a LINE L1 5692 6151 -1657 268 346 124 46 chr3 109285469 109286035 -118238543 - L2 LINE L2 -967 2347 1738 429 189 364 0 chr3 109286324 109286467 -118238111 + MER3 DNA MER1_type 15 209 0 246 167 21 0 chr3 109286425 109286473 -118238105 - MER3 DNA MER1_type -119 90 42 * 30 0 0 0 chr3 109287553 109287583 -118236995 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr3 109288108 109288133 -118236445 + AT_rich Low_complexity Low_complexity 1 25 0 203 226 32 48 chr3 109288150 109288212 -118236366 - MIR SINE MIR -6 256 196 534 296 110 4 chr3 109288239 109288503 -118236075 + MER46C DNA MER2_type 9 300 -38 8282 195 13 3 chr3 109288537 109291054 -118233524 - L1PA15 LINE L1 0 6165 3629 263 248 18 101 chr3 109291058 109291167 -118233411 - MIR SINE MIR -158 104 5 322 273 43 22 chr3 109291696 109291939 -118232639 - L1M2 LINE L1 -690 5431 5308 568 195 98 8 chr3 109291977 109292100 -118232478 - AluJo SINE Alu -178 134 1 1955 187 59 46 chr3 109292213 109292690 -118231888 + MLT1D LTR MaLR 23 505 0 470 279 96 25 chr3 109292698 109293179 -118231399 - L1M4 LINE L1 -1011 5135 4621 400 301 66 22 chr3 109293483 109293666 -118230912 - L1M4 LINE L1 -1946 4200 4010 7265 51 2 0 chr3 109293763 109294939 -118229639 - L1PA5 LINE L1 0 6154 4978 2134 122 0 0 chr3 109296284 109296572 -118228006 + AluSx SINE Alu 1 288 -24 214 271 51 34 chr3 109296919 109296978 -118227600 + L2 LINE L2 3209 3268 -4 1227 155 0 21 chr3 109297049 109297243 -118227335 + AluJb SINE Alu 6 195 -117 22 35 0 0 chr3 109297382 109297411 -118227167 + AT_rich Low_complexity Low_complexity 1 29 0 308 281 18 88 chr3 109298126 109298343 -118226235 + MLT1I LTR MaLR 61 262 -147 319 292 90 42 chr3 109298593 109298737 -118225841 - MIR3 SINE MIR -22 186 36 362 267 152 52 chr3 109300950 109301160 -118223418 - MIR SINE MIR -2 260 30 550 343 42 14 chr3 109301661 109301877 -118222701 - MIR SINE MIR -7 255 34 767 264 60 5 chr3 109302373 109302574 -118222004 - MIR SINE MIR -4 258 47 516 289 96 70 chr3 109303097 109303398 -118221180 - MER102b DNA MER1_type 0 341 33 1557 220 18 18 chr3 109303429 109303770 -118220808 + MER58B DNA MER1_type 1 341 0 467 105 0 0 chr3 109304170 109304246 -118220332 + L1MB4 LINE L1 6105 6180 0 289 221 128 0 chr3 109304369 109304455 -118220123 + MIR SINE MIR 56 152 -110 42810 35 21 2 chr3 109306340 109312376 -118212202 + L1PA3 LINE L1 1 6155 0 276 127 0 0 chr3 109312404 109312459 -118212119 + (A)n Simple_repeat Simple_repeat 1 55 0 1549 113 0 26 chr3 109314409 109314640 -118209938 + L1PA8A LINE L1 5907 6131 0 29 0 0 0 chr3 109314674 109314703 -118209875 + AT_rich Low_complexity Low_complexity 1 29 0 190 295 170 0 chr3 109315977 109316089 -118208489 + MIR SINE MIR 66 196 -66 1574 212 3 0 chr3 109316745 109317047 -118207531 - AluJb SINE Alu -9 303 1 327 289 24 0 chr3 109317562 109317645 -118206933 + L2 LINE L2 3228 3312 -1 303 237 184 18 chr3 109318752 109318866 -118205712 + L1ME LINE L1 5312 5444 -798 2280 105 0 3 chr3 109318870 109319175 -118205403 - AluY SINE Alu -7 304 1 319 208 135 78 chr3 109319292 109319484 -118205094 + L1ME LINE L1 5602 5804 -317 21 0 0 0 chr3 109320121 109320142 -118204436 + AT_rich Low_complexity Low_complexity 1 21 0 1159 191 14 0 chr3 109320253 109320468 -118204110 - MER20 DNA MER1_type -1 218 1 261 360 76 84 chr3 109320552 109320802 -118203776 + L2 LINE L2 2976 3223 -49 8253 132 11 2 chr3 109324366 109325654 -118198924 + HSMAR2 DNA Mariner 2 1301 -1 433 257 90 21 chr3 109326785 109326929 -118197649 + MER5B DNA MER1_type 13 166 -12 2288 104 0 13 chr3 109329327 109329644 -118194934 - AluSp SINE Alu 0 313 1 385 330 123 16 chr3 109333871 109334238 -118190340 + L2 LINE L2 2859 3264 -8 234 0 0 0 chr3 109334882 109334908 -118189670 + (TTA)n Simple_repeat Simple_repeat 1 26 0 2043 122 4 0 chr3 109334908 109335187 -118189391 - AluSx SINE Alu -32 280 1 2153 115 0 0 chr3 109335393 109335680 -118188898 - AluSx SINE Alu -25 287 1 223 370 0 72 chr3 109337495 109337633 -118186945 - L2 LINE L2 -8 3264 3137 2187 112 0 7 chr3 109338680 109338985 -118185593 - AluSg1 SINE Alu -6 303 1 25 0 0 0 chr3 109345424 109345449 -118179129 + AT_rich Low_complexity Low_complexity 1 25 0 230 316 0 0 chr3 109345776 109345833 -118178745 + L2 LINE L2 3216 3272 0 362 401 29 21 chr3 109346095 109346374 -118178204 + L2 LINE L2 2992 3272 0 2965 130 17 6 chr3 109346504 109346972 -118177606 + L1PA15 LINE L1 5684 6156 -9 234 0 0 0 chr3 109347872 109347898 -118176680 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 2408 54 0 13 chr3 109348813 109349111 -118175467 - AluY SINE Alu -13 298 5 194 159 23 0 chr3 109349825 109349869 -118174709 - L3 LINE CR1 -729 848 804 842 95 0 0 chr3 109349976 109350081 -118174497 - AluSp SINE Alu -206 107 3 744 222 64 12 chr3 109350518 109350689 -118173889 - MER5A DNA MER1_type -9 180 1 476 273 93 28 chr3 109350828 109351099 -118173479 - L1ME LINE L1 -519 5602 5313 305 308 27 34 chr3 109351417 109351563 -118173015 - L1ME LINE L1 -1303 4843 4699 278 319 12 108 chr3 109352950 109353191 -118171387 - L2 LINE L2 -23 3249 3032 194 159 23 0 chr3 109354952 109354996 -118169582 - L3 LINE CR1 -729 848 804 23 0 0 0 chr3 109355000 109355023 -118169555 + AT_rich Low_complexity Low_complexity 1 23 0 961 328 30 35 chr3 109356476 109356909 -118167669 + L2 LINE L2 2882 3312 -1 286 245 189 9 chr3 109357547 109357653 -118166925 - L2 LINE L2 0 3313 3189 11240 220 60 31 chr3 109357832 109360458 -118164120 + L1M2 LINE L1 1267 4149 -2699 8271 68 3 5 chr3 109360458 109361531 -118163047 + MER11C LTR ERVK 1 1071 0 11240 220 60 31 chr3 109361531 109363263 -118161315 + L1M2 LINE L1 4149 5829 -1019 5039 100 19 32 chr3 109363246 109363677 -118160901 + L1PB1 LINE L1 5365 5783 -368 * 362 57 19 0 chr3 109363677 109363730 -118160848 + (TG)n Simple_repeat Simple_repeat 2 55 0 5039 100 19 32 chr3 109363730 109364090 -118160488 + L1PB1 LINE L1 5783 6146 -5 2658 127 16 0 chr3 109364101 109364526 -118160052 + L1M2 LINE L1 6020 6451 -551 384 295 175 35 chr3 109364535 109365084 -118159494 + L2 LINE L2 1734 2359 -955 469 333 50 23 chr3 109365166 109365424 -118159154 + L2 LINE L2 2590 2854 -460 2028 114 7 4 chr3 109365960 109366241 -118158337 - AluSx SINE Alu -10 302 21 238 340 98 10 chr3 109367011 109367214 -118157364 - L2 LINE L2 -954 2360 2140 695 299 60 5 chr3 109367887 109368104 -118156474 - MIR SINE MIR -14 248 20 556 200 40 32 chr3 109368383 109368508 -118156070 + FLAM_A SINE Alu 2 127 -6 2216 100 0 13 chr3 109368510 109368820 -118155758 + AluY SINE Alu 1 306 -5 2117 163 112 0 chr3 109369873 109370248 -118154330 + MSTB LTR MaLR 1 417 -9 311 312 69 77 chr3 109370294 109370541 -118154037 + HAL1 LINE L1 192 436 -2071 247 360 129 25 chr3 109370599 109371041 -118153537 - L2 LINE L2 -962 2352 1865 180 254 0 63 chr3 109371043 109371106 -118153472 - L2 LINE L2 -1 3271 3213 22 0 0 0 chr3 109371283 109371305 -118153273 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr3 109373207 109373238 -118151340 + AT_rich Low_complexity Low_complexity 1 31 0 1912 144 3 10 chr3 109373330 109373622 -118150956 - AluJb SINE Alu -22 290 1 321 298 18 0 chr3 109373717 109373831 -118150747 - MIR SINE MIR -30 232 117 884 248 122 19 chr3 109374781 109375092 -118149486 + MER69B DNA AcHobo 2 344 -882 1574 205 125 23 chr3 109375142 109375359 -118149219 + MER69B DNA AcHobo 432 626 -1900 1856 128 0 0 chr3 109375359 109375616 -118148962 - AluSx SINE Alu -20 292 36 1574 205 125 23 chr3 109375616 109376095 -118148483 + MER69B DNA AcHobo 626 1223 -3 218 316 205 47 chr3 109376098 109376288 -118148290 - L2 LINE L2 -27 3245 3026 21 36 0 0 chr3 109376815 109376843 -118147735 + AT_rich Low_complexity Low_complexity 1 28 0 287 323 105 8 chr3 109377299 109377432 -118147146 - MIR3 SINE MIR -3 205 60 24 0 0 0 chr3 109377623 109377647 -118146931 + AT_rich Low_complexity Low_complexity 1 24 0 1722 162 35 7 chr3 109378344 109378634 -118145944 - AluJo SINE Alu -14 298 1 250 357 122 0 chr3 109378728 109378826 -118145752 - L2 LINE L2 -23 3249 3140 232 279 47 0 chr3 109379585 109379671 -118144907 + L1MC4 LINE L1 6614 6703 -1339 240 163 0 0 chr3 109379672 109379715 -118144863 + (TA)n Simple_repeat Simple_repeat 2 44 0 424 179 38 7 chr3 109381063 109381294 -118143284 + AluJo SINE Alu 1 298 -14 185 0 40 0 chr3 109381618 109381643 -118142935 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 21 36 0 0 chr3 109382172 109382200 -118142378 + AT_rich Low_complexity Low_complexity 1 28 0 371 216 59 10 chr3 109382254 109382356 -118142222 - L2 LINE L2 0 3313 3207 354 231 81 116 chr3 109382378 109382551 -118142027 - MER5A DNA MER1_type -22 167 1 185 375 21 10 chr3 109383902 109383998 -118140580 + MIR3 SINE MIR 108 204 -4 570 313 155 18 chr3 109385384 109385726 -118138852 + L2 LINE L2 2832 3220 -93 28 48 0 0 chr3 109385780 109385822 -118138756 + AT_rich Low_complexity Low_complexity 1 42 0 2176 157 77 2 chr3 109386779 109387181 -118137397 + MSTB1 LTR MaLR 1 432 0 6847 53 6 13 chr3 109387214 109388867 -118135711 - L1PA7 LINE L1 -2 6152 4513 476 136 80 0 chr3 109389155 109389243 -118135335 - L1MA4 LINE L1 -117 6183 6089 458 150 10 20 chr3 109389274 109389374 -118135204 + L1MA4A LINE L1 6196 6294 -9 1878 213 117 13 chr3 109389402 109389942 -118134636 + LTR48B LTR ERV1 9 604 -40 961 277 89 18 chr3 109390088 109390536 -118134042 + HAL1 LINE L1 1317 1796 -711 497 242 181 13 chr3 109390710 109391020 -118133558 + HAL1 LINE L1 2019 2380 -127 275 314 32 24 chr3 109391141 109391265 -118133313 + L2 LINE L2 3180 3304 -9 250 333 151 0 chr3 109391429 109391522 -118133056 - MIR3 SINE MIR -18 190 84 2224 112 6 10 chr3 109392087 109392401 -118132177 - AluSq SINE Alu 0 313 1 1096 296 89 15 chr3 109392406 109392876 -118131702 - L1MC4a LINE L1 -1926 5882 5378 301 310 98 38 chr3 109393124 109393308 -118131270 + MIR SINE MIR 54 248 -14 268 371 38 0 chr3 109394135 109394240 -118130338 + L2 LINE L2 3179 3287 -26 259 222 37 0 chr3 109395253 109395307 -118129271 + MER20B DNA MER1_type 54 109 -674 21 36 0 0 chr3 109398642 109398670 -118125908 + GC_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr3 109400368 109400404 -118124174 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 109401313 109401334 -118123244 + AT_rich Low_complexity Low_complexity 1 21 0 607 193 60 60 chr3 109401748 109401914 -118122664 - FRAM SINE Alu 0 166 1 1785 180 0 19 chr3 109402027 109402344 -118122234 + AluJb SINE Alu 1 311 -1 367 100 83 0 chr3 109403074 109403134 -118121444 - L1PA16 LINE L1 -17 6149 6085 10700 129 40 30 chr3 109403526 109405090 -118119488 + Tigger1 DNA MER2_type 1 1588 -830 2159 78 0 41 chr3 109405090 109405423 -118119155 + AluSc SINE Alu 1 321 0 10700 129 40 30 chr3 109405423 109405676 -118118902 + Tigger1 DNA MER2_type 1588 1837 -581 3299 161 9 12 chr3 109405913 109406483 -118118095 + Tigger1 DNA MER2_type 1850 2417 -1 27 49 0 0 chr3 109407502 109407543 -118117035 + AT_rich Low_complexity Low_complexity 1 41 0 1358 255 80 32 chr3 109407582 109408056 -118116522 - L1MC4 LINE L1 -140 7902 7406 482 160 39 26 chr3 109408058 109408214 -118116364 + CT-rich Low_complexity Low_complexity 2 159 0 482 128 0 12 chr3 109408259 109408345 -118116233 + (TCCC)n Simple_repeat Simple_repeat 1 85 0 1717 183 3 0 chr3 109408347 109408647 -118115931 - AluJb SINE Alu -11 301 1 3050 207 115 15 chr3 109408648 109409503 -118115075 - L1MC4 LINE L1 -626 7416 6477 992 243 79 10 chr3 109409729 109410081 -118114497 - L1ME LINE L1 -605 5953 5585 1252 257 92 58 chr3 109410102 109411543 -118113035 - L1MEc LINE L1 -3446 3094 1488 1852 152 33 18 chr3 109411545 109411881 -118112697 - Tigger1 DNA MER2_type -2074 344 4 243 61 0 0 chr3 109413077 109413110 -118111468 + (CA)n Simple_repeat Simple_repeat 2 34 0 2241 143 127 15 chr3 109413482 109413956 -118110622 - LTR49 LTR ERV1 -68 527 1 203 296 214 10 chr3 109414353 109414451 -118110127 + MIR SINE MIR 19 136 -126 465 183 0 24 chr3 109414453 109414535 -118110043 - MER58 DNA MER1_type 0 2420 2341 1777 122 0 0 chr3 109414535 109414780 -118109798 - AluSx SINE Alu -7 305 61 7386 32 5 5 chr3 109414908 109416330 -118108248 + L1PA5 LINE L1 4730 6151 -3 390 211 193 0 chr3 109416381 109416495 -118108083 + MIR SINE MIR 127 262 0 1553 161 69 43 chr3 109417013 109417360 -118107218 + MLT1A1 LTR MaLR 10 365 0 648 226 39 13 chr3 109418199 109418354 -118106224 + MIR SINE MIR 32 190 -72 269 352 72 32 chr3 109419279 109419404 -118105174 + L2 LINE L2 3143 3272 0 29 70 0 0 chr3 109419642 109419699 -118104879 + AT_rich Low_complexity Low_complexity 1 57 0 626 224 0 0 chr3 109420134 109420259 -118104319 - FLAM_A SINE Alu -6 136 12 4343 253 138 53 chr3 109420306 109422613 -118101965 - HAL1 LINE L1 -2 2505 4 1724 136 43 7 chr3 109422964 109423243 -118101335 - AluSx SINE Alu -23 289 1 28 0 0 0 chr3 109423249 109423277 -118101301 + AT_rich Low_complexity Low_complexity 1 28 0 2091 110 0 26 chr3 109423570 109423865 -118100713 + AluSq SINE Alu 1 289 -24 369 0 0 0 chr3 109423865 109423906 -118100672 + (CA)n Simple_repeat Simple_repeat 2 42 0 2091 110 0 26 chr3 109423906 109423918 -118100660 + AluSq SINE Alu 289 300 -13 2073 111 31 0 chr3 109425582 109425871 -118098707 - AluSc SINE Alu -11 298 1 25 65 0 0 chr3 109426170 109426216 -118098362 + AT_rich Low_complexity Low_complexity 1 46 0 541 252 19 39 chr3 109426810 109426965 -118097613 + MIR SINE MIR 73 224 -38 26 64 0 0 chr3 109427014 109427061 -118097517 + AT_rich Low_complexity Low_complexity 1 47 0 684 272 184 36 chr3 109427630 109427975 -118096603 + L2 LINE L2 2804 3207 -106 401 54 18 0 chr3 109427975 109428031 -118096547 + (CA)n Simple_repeat Simple_repeat 2 58 0 684 272 184 36 chr3 109428031 109428049 -118096529 + L2 LINE L2 3207 3221 -92 489 259 12 41 chr3 109429272 109429442 -118095136 - L2 LINE L2 0 3313 3149 284 292 44 36 chr3 109429453 109429590 -118094988 - L2 LINE L2 -317 2996 2859 254 250 62 10 chr3 109430426 109430522 -118094056 - L1MC4a LINE L1 -1634 6174 6074 21 0 0 0 chr3 109430606 109430627 -118093951 + AT_rich Low_complexity Low_complexity 1 21 0 883 293 54 30 chr3 109430645 109431086 -118093492 - L1MC4a LINE L1 -1908 5900 5449 1811 108 66 18 chr3 109431602 109431888 -118092690 - AluSx SINE Alu -12 300 1 424 283 42 25 chr3 109432159 109432396 -118092182 + L1MC4a LINE L1 5686 5926 -1882 189 121 0 0 chr3 109432446 109432479 -118092099 + (TA)n Simple_repeat Simple_repeat 1 33 0 25 75 0 0 chr3 109432753 109432806 -118091772 + AT_rich Low_complexity Low_complexity 1 53 0 352 257 0 53 chr3 109433501 109433614 -118090964 + MER112 DNA MER1_type 12 118 -142 458 326 64 34 chr3 109433742 109434198 -118090380 - L1ME LINE L1 -303 5818 5333 726 264 114 39 chr3 109434348 109434837 -118089741 + L1ME4a LINE L1 5582 6107 -14 24 67 0 0 chr3 109434854 109434899 -118089679 + AT_rich Low_complexity Low_complexity 1 45 0 201 171 0 0 chr3 109434956 109434991 -118089587 + A-rich Low_complexity Low_complexity 1 35 0 338 301 127 17 chr3 109435197 109435370 -118089208 - L1ME LINE L1 -400 5721 5530 25 51 0 0 chr3 109435648 109435687 -118088891 + AT_rich Low_complexity Low_complexity 1 39 0 1078 210 69 39 chr3 109436301 109436634 -118087944 + MER2 DNA MER2_type 2 344 0 548 309 67 72 chr3 109436738 109437114 -118087464 - L2 LINE L2 -4 3268 2895 2395 71 0 0 chr3 109438074 109438368 -118086210 - AluY SINE Alu -16 295 2 344 312 115 37 chr3 109438435 109438810 -118085768 - L2 LINE L2 -93 3220 2817 242 318 300 6 chr3 109438985 109439155 -118085423 + L2 LINE L2 2443 2662 -652 * 510 247 115 23 chr3 109439134 109439308 -118085270 + MIR SINE MIR 73 262 0 23 78 0 0 chr3 109440384 109440435 -118084143 + AT_rich Low_complexity Low_complexity 1 51 0 813 153 58 32 chr3 109440445 109440635 -118083943 - MER2 DNA MER2_type -139 206 12 213 311 49 0 chr3 109440836 109440897 -118083681 - L2 LINE L2 -39 3233 3170 2115 127 0 6 chr3 109440995 109441309 -118083269 + AluSx SINE Alu 1 312 0 414 163 38 0 chr3 109441345 109441425 -118083153 + L1MA4 LINE L1 1266 1348 -5217 3488 208 15 15 chr3 109441427 109442294 -118082284 + L1MA4 LINE L1 3474 4346 -3219 3145 82 24 20 chr3 109442297 109442748 -118081830 + MLT2A2 LTR ERVL 1 453 0 7712 59 3 35 chr3 109442748 109443775 -118080803 + HERVL-A2 LTR ERVL 1 994 -4660 5159 76 28 0 chr3 109443772 109444042 -118080536 + HERVL-A1 LTR ERVL 4948 5209 -445 * 207 0 0 0 chr3 109444042 109444065 -118080513 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 5159 76 28 0 chr3 109444065 109444482 -118080096 + HERVL-A1 LTR ERVL 5209 5654 0 3256 76 9 14 chr3 109444482 109444928 -118079650 + MLT2A1 LTR ERVL 1 444 0 11020 162 33 19 chr3 109444934 109445034 -118079544 + L1MA4 LINE L1 4357 4454 -3265 2314 87 7 0 chr3 109445034 109445334 -118079244 + AluSp SINE Alu 1 302 -11 11020 162 33 19 chr3 109445334 109448536 -118076042 + L1MA4 LINE L1 4454 7714 -5 279 224 33 133 chr3 109450278 109450488 -118074090 + MLT1K LTR MaLR 399 587 -1 422 286 8 34 chr3 109452192 109452311 -118072267 + MER5B DNA MER1_type 63 178 0 360 0 0 0 chr3 109452702 109452742 -118071836 + (CA)n Simple_repeat Simple_repeat 2 41 0 338 260 182 7 chr3 109454543 109454697 -118069881 + MIR SINE MIR 73 253 -9 2019 133 0 3 chr3 109455259 109455561 -118069017 + AluSg SINE Alu 2 302 -8 402 171 11 50 chr3 109455567 109455671 -118068907 + AluJ/FLAM SINE Alu 1 86 -216 400 138 12 12 chr3 109457538 109457618 -118066960 + (TA)n Simple_repeat Simple_repeat 2 81 0 1212 281 183 58 chr3 109458138 109458986 -118065592 + L2 LINE L2 1288 2241 -1073 728 252 179 13 chr3 109459161 109459474 -118065104 + L2 LINE L2 2949 3313 0 22 70 0 0 chr3 109513270 109513313 -118011265 + AT_rich Low_complexity Low_complexity 1 43 0 211 283 131 30 chr3 109513950 109514049 -118010529 + L2 LINE L2 3195 3303 -10 22 70 0 0 chr3 109514554 109514597 -118009981 + AT_rich Low_complexity Low_complexity 1 43 0 627 238 28 0 chr3 109515035 109515178 -118009400 + MER117 DNA MER1_type 1 147 -50 613 265 163 0 chr3 109515640 109515855 -118008723 + MIR SINE MIR 9 258 -4 1757 176 10 16 chr3 109515951 109516264 -118008314 - AluJo SINE Alu -1 311 1 205 239 137 43 chr3 109518710 109518827 -118005751 + L2 LINE L2 585 712 -2602 927 323 100 69 chr3 109519036 109520148 -118004430 + L2 LINE L2 1641 2786 -528 369 0 0 0 chr3 109520821 109520862 -118003716 + (CA)n Simple_repeat Simple_repeat 1 41 0 216 0 0 0 chr3 109520861 109520885 -118003693 + (TC)n Simple_repeat Simple_repeat 2 25 0 * 872 191 45 35 chr3 109522080 109522279 -118002299 + MER3 DNA MER1_type 9 209 0 694 286 48 1 chr3 109523174 109523396 -118001182 - MIR SINE MIR -26 236 1 181 359 98 22 chr3 109523680 109523772 -118000806 + L2 LINE L2 3137 3235 -37 704 206 46 17 chr3 109524516 109524691 -117999887 - MIR SINE MIR -4 258 79 276 365 107 48 chr3 109524787 109525077 -117999501 - L2 LINE L2 0 3272 2966 315 330 51 34 chr3 109525566 109525742 -117998836 - MIR SINE MIR -9 253 75 522 361 163 8 chr3 109525868 109526372 -117998206 + L2 LINE L2 2177 2758 -556 289 171 114 0 chr3 109526461 109526531 -117998047 + L2 LINE L2 3151 3228 -44 2463 124 6 3 chr3 109527689 109528052 -117996526 + THE1B LTR MaLR 1 364 0 230 260 195 24 chr3 109528573 109528696 -117995882 + MIR3 SINE MIR 58 201 -7 532 299 78 4 chr3 109531049 109531293 -117993285 + MIR SINE MIR 1 262 0 442 265 188 6 chr3 109531295 109531476 -117993102 - MIR SINE MIR -12 250 37 641 254 41 45 chr3 109531482 109531702 -117992876 + MER20 DNA MER1_type 1 219 0 575 293 165 39 chr3 109531930 109532343 -117992235 + MLT1K LTR MaLR 122 586 -2 1225 202 88 11 chr3 109532582 109532844 -117991734 - AluJo SINE Alu -30 282 1 232 301 68 10 chr3 109534280 109534383 -117990195 - MIR3 SINE MIR -2 206 98 21 0 0 0 chr3 109534584 109534605 -117989973 + AT_rich Low_complexity Low_complexity 1 21 0 399 219 42 50 chr3 109534628 109534747 -117989831 + L2 LINE L2 3102 3219 -94 397 282 58 0 chr3 109534886 109534989 -117989589 + MIR3 SINE MIR 82 190 -18 366 227 70 16 chr3 109535042 109535170 -117989408 + Charlie7 DNA MER1_type 2478 2612 0 294 252 8 16 chr3 109538243 109538366 -117986212 + CT-rich Low_complexity Low_complexity 3 124 0 271 278 10 41 chr3 109539599 109539696 -117984882 - MIR3 SINE MIR -3 205 112 692 143 0 156 chr3 109539994 109540218 -117984360 - MER53 DNA DNA 0 189 1 21 89 0 0 chr3 109540704 109540760 -117983818 + AT_rich Low_complexity Low_complexity 1 56 0 1878 150 49 41 chr3 109540864 109541251 -117983327 + MLT1B LTR MaLR 1 390 0 2104 85 16 63 chr3 109541353 109541670 -117982908 - AluSq SINE Alu -11 302 1 2903 9 0 0 chr3 109542000 109542317 -117982261 - AluYb8 SINE Alu -1 317 1 362 286 41 0 chr3 109543243 109543341 -117981237 + MIR3 SINE MIR 63 164 -44 269 228 63 38 chr3 109544297 109544376 -117980202 + MIR SINE MIR 172 252 -10 21 57 0 0 chr3 109546534 109546569 -117978009 + AT_rich Low_complexity Low_complexity 1 35 0 327 213 0 0 chr3 109546727 109546802 -117977776 + MLT2B2 LTR ERVL 1 75 -440 1944 189 48 24 chr3 109547290 109547665 -117976913 + MLT2B2 LTR ERVL 125 508 -7 2154 116 47 42 chr3 109547665 109548026 -117976552 - THE1B LTR MaLR 0 364 2 240 314 171 7 chr3 109548305 109548445 -117976133 + MIR3 SINE MIR 44 206 -2 1548 168 70 54 chr3 109549028 109549397 -117975181 - THE1C LTR MaLR 0 375 1 9734 127 14 43 chr3 109549402 109551020 -117973558 - THE1C-int LTR MaLR -6 1574 3 1709 136 85 25 chr3 109551022 109551376 -117973202 - THE1C LTR MaLR 0 375 1 253 316 31 20 chr3 109552101 109552199 -117972379 - L2 LINE L2 -79 3234 3136 432 272 35 0 chr3 109553445 109553559 -117971019 + L2 LINE L2 3193 3310 -3 319 275 148 80 chr3 109553782 109554120 -117970458 - L2 LINE L2 -337 2977 2617 2009 162 69 29 chr3 109554418 109554887 -117969691 - MLT2B2 LTR ERVL 0 554 1 22 0 0 0 chr3 109556263 109556285 -117968293 + AT_rich Low_complexity Low_complexity 1 22 0 204 40 0 0 chr3 109557406 109557431 -117967147 + (TA)n Simple_repeat Simple_repeat 1 25 0 930 284 44 0 chr3 109559444 109559694 -117964884 + MIR SINE MIR 2 262 0 291 247 52 0 chr3 109560040 109560117 -117964461 + MIR SINE MIR 73 153 -109 198 301 41 0 chr3 109560144 109560217 -117964361 - L2 LINE L2 -13 3300 3225 321 367 34 0 chr3 109560250 109560397 -117964181 - MIR SINE MIR -109 153 2 2185 103 13 0 chr3 109560743 109561045 -117963533 + AluSp SINE Alu 2 307 -6 648 243 143 14 chr3 109562140 109562350 -117962228 + MIR SINE MIR 25 261 -1 190 224 0 86 chr3 109563005 109563063 -117961515 - L2 LINE L2 -2 3311 3259 2157 121 0 0 chr3 109563202 109563492 -117961086 + AluSc SINE Alu 1 290 -19 331 254 167 29 chr3 109564473 109564504 -117960074 - MIR3 SINE MIR -12 196 171 2239 112 0 3 chr3 109564504 109564818 -117959760 + AluSq SINE Alu 1 313 0 331 254 167 29 chr3 109564818 109564924 -117959654 - MIR3 SINE MIR -37 171 40 221 97 0 0 chr3 109565154 109565185 -117959393 - MIR SINE MIR 0 262 232 2411 46 0 3 chr3 109565207 109565492 -117959086 - AluY SINE Alu -4 307 24 23 33 0 0 chr3 109565646 109565676 -117958902 + AT_rich Low_complexity Low_complexity 1 30 0 4326 186 30 26 chr3 109567588 109568273 -117956305 + L1MB8 LINE L1 4637 5318 -860 2245 117 0 0 chr3 109568273 109568571 -117956007 + AluSq SINE Alu 1 298 -15 4326 186 30 26 chr3 109568571 109569405 -117955173 + L1MB8 LINE L1 5318 6163 -15 24 0 0 0 chr3 109569601 109569625 -117954953 + AT_rich Low_complexity Low_complexity 1 24 0 2526 50 22 0 chr3 109570306 109570626 -117953952 - L1PA5 LINE L1 -2 6152 5826 568 260 31 93 chr3 109570974 109571338 -117953240 + MLT1I LTR MaLR 39 384 -25 182 346 164 10 chr3 109572585 109572689 -117951889 + L2 LINE L2 3147 3266 -6 214 255 0 0 chr3 109572690 109572737 -117951841 + GA-rich Low_complexity Low_complexity 4 50 0 332 330 11 45 chr3 109573143 109573253 -117951325 + MIR SINE MIR 47 150 -112 1040 314 38 10 chr3 109573253 109573651 -117950927 + MLT1I LTR MaLR 1 409 0 332 330 11 45 chr3 109573651 109573716 -117950862 + MIR SINE MIR 150 216 -46 2456 242 59 85 chr3 109573768 109574767 -117949811 - MER69B DNA AcHobo -252 974 2 424 260 133 12 chr3 109575088 109575385 -117949193 + MLT1L LTR MaLR 162 521 -94 1117 278 81 11 chr3 109577448 109578000 -117946578 - L1MC4a LINE L1 -305 5816 5289 183 326 0 0 chr3 109578593 109578639 -117945939 - L2 LINE L2 -100 3172 3127 433 157 102 19 chr3 109579125 109579233 -117945345 + MER103 DNA DNA 2 118 -48 1084 264 142 108 chr3 109580496 109581295 -117943283 + L2 LINE L2 49 882 -2432 2285 121 0 0 chr3 109581295 109581602 -117942976 - AluSq SINE Alu -6 307 1 1084 264 142 108 chr3 109581602 109581689 -117942889 + L2 LINE L2 882 965 -2349 821 184 222 20 chr3 109581689 109581982 -117942596 - Charlie5 DNA MER1_type -35 2577 2226 589 168 42 8 chr3 109581967 109582086 -117942492 - Charlie5 DNA MER1_type -2485 127 5 * 2829 279 193 2 chr3 109582091 109583175 -117941403 + L2 LINE L2 1280 2570 -744 2056 137 3 3 chr3 109583535 109583842 -117940736 - AluSx SINE Alu -4 308 2 269 203 25 38 chr3 109586336 109586415 -117938163 + CT-rich Low_complexity Low_complexity 3 80 0 265 268 131 60 chr3 109589334 109589429 -117935149 - MER5A DNA MER1_type -3 186 99 689 176 56 0 chr3 109589429 109589554 -117935024 - FLAM_A SINE Alu -1 132 1 265 268 131 60 chr3 109589554 109589626 -117934952 - MER5A DNA MER1_type -90 99 7 2268 107 7 0 chr3 109590099 109590409 -117934169 - AluSx SINE Alu 0 312 1 2682 160 8 27 chr3 109592257 109592733 -117931845 + MLT1C LTR MaLR 1 467 0 2022 133 0 3 chr3 109592965 109593265 -117931313 - AluSg SINE Alu -11 299 1 26 0 0 0 chr3 109593582 109593608 -117930970 + AT_rich Low_complexity Low_complexity 1 26 0 8606 37 3 1 chr3 109593611 109594662 -117929916 - L1PA5 LINE L1 -1046 5100 4048 7420 40 0 0 chr3 109594662 109595700 -117928878 + L1PA5 LINE L1 5111 6148 -6 329 304 65 91 chr3 109595962 109596238 -117928340 - LTR16C LTR ERVL -222 269 1 23 68 0 0 chr3 109599233 109599277 -117925301 + AT_rich Low_complexity Low_complexity 1 44 0 264 335 0 127 chr3 109601146 109601319 -117923259 + MER5A DNA MER1_type 10 160 -29 27 0 0 0 chr3 109602492 109602519 -117922059 + AT_rich Low_complexity Low_complexity 1 27 0 1838 27 0 9 chr3 109603124 109603349 -117921229 - L1PA4 LINE L1 -3 6152 5930 2052 36 0 0 chr3 109603349 109603597 -117920981 + L1PA3 LINE L1 5591 5838 -317 287 232 87 0 chr3 109603792 109603861 -117920717 + MIR SINE MIR 67 141 -67 286 75 75 0 chr3 109603891 109603958 -117920620 + (TA)n Simple_repeat Simple_repeat 2 73 0 763 361 101 17 chr3 109603972 109604688 -117919890 + L2 LINE L2 2521 3302 -11 5494 158 45 5 chr3 109604753 109605903 -117918675 - L1MA9 LINE L1 -1 6311 5120 680 306 48 20 chr3 109606129 109606423 -117918155 - MLT1L LTR MaLR 0 615 314 1120 143 50 42 chr3 109606961 109607199 -117917379 + L1PA16 LINE L1 5924 6163 -3 25 0 0 0 chr3 109607536 109607561 -117917017 + AT_rich Low_complexity Low_complexity 1 25 0 970 89 0 0 chr3 109608165 109608289 -117916289 - AluSg/x SINE Alu -11 301 178 252 0 0 0 chr3 109609248 109609276 -117915302 + (TG)n Simple_repeat Simple_repeat 1 28 0 2156 123 40 6 chr3 109609615 109609964 -117914614 + THE1B LTR MaLR 3 363 -1 850 158 110 0 chr3 109611827 109611973 -117912605 + MER70A LTR ERVL 1 162 -310 * 1840 244 28 56 chr3 109611969 109612472 -117912106 + MER70B LTR ERVL 90 578 0 234 200 91 0 chr3 109612568 109612623 -117911955 + Charlie7 DNA MER1_type 38 97 -2515 5108 22 2 0 chr3 109613362 109613958 -117910620 - L1PA2 LINE L1 0 6155 5559 28755 42 38 2 chr3 109613958 109617613 -117906965 - L1P LINE L1 -2362 3784 1 471 387 18 21 chr3 109617937 109618216 -117906362 + L2 LINE L2 2397 2674 -640 2072 99 0 45 chr3 109618245 109618557 -117906021 - AluSp SINE Alu -15 298 1 24 0 0 0 chr3 109619420 109619444 -117905134 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr3 109620631 109620653 -117903925 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 109622040 109622063 -117902515 + AT_rich Low_complexity Low_complexity 1 23 0 181 298 231 8 chr3 109622905 109623026 -117901552 + MIR SINE MIR 115 262 0 2077 158 72 23 chr3 109623208 109623650 -117900928 - L1MB8 LINE L1 0 6178 5715 1286 176 13 59 chr3 109623871 109624178 -117900400 + Charlie1a DNA MER1_type 42 334 -1121 746 319 74 16 chr3 109624177 109624487 -117900091 - LTR16A LTR ERVL -71 379 52 * 607 311 126 0 chr3 109624735 109624957 -117899621 - MIR SINE MIR 0 262 13 233 236 45 67 chr3 109626462 109626551 -117898027 - L2 LINE L2 -1 3271 3185 455 304 36 36 chr3 109626636 109626774 -117897804 + L2 LINE L2 3127 3264 -8 1494 190 19 0 chr3 109629813 109630076 -117894502 + AluJo SINE Alu 1 268 -44 198 103 0 0 chr3 109630081 109630110 -117894468 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr3 109630343 109630365 -117894213 + AT_rich Low_complexity Low_complexity 1 22 0 347 265 23 68 chr3 109630584 109630716 -117893862 - MIR SINE MIR 0 262 137 1622 248 20 52 chr3 109630726 109631080 -117893498 + L2 LINE L2 2457 2796 -518 770 220 0 43 chr3 109631080 109631266 -117893312 - MER5B DNA MER1_type 0 178 1 1622 248 20 52 chr3 109631266 109631355 -117893223 + L2 LINE L2 2796 2886 -428 264 277 118 17 chr3 109631356 109631475 -117893103 + MER94 DNA DNA 1 131 -3 850 276 105 8 chr3 109631512 109631874 -117892704 + L2 LINE L2 2917 3313 0 703 263 39 0 chr3 109631879 109632058 -117892520 + MIR SINE MIR 72 257 -5 202 297 44 22 chr3 109632074 109632165 -117892413 + L2 LINE L2 757 849 -2465 549 165 0 48 chr3 109632190 109632293 -117892285 + MER63 DNA MER1_type 27 750 -86 182 343 135 44 chr3 109632350 109632668 -117891910 + L2 LINE L2 855 1201 -2113 4533 253 43 24 chr3 109633314 109634973 -117889605 + L1MB3 LINE L1 2429 4118 -2028 * 4694 192 18 41 chr3 109634963 109635231 -117889347 + L1MB3 LINE L1 4580 4852 -1331 1096 209 30 111 chr3 109635231 109635628 -117888950 + MLT1A1 LTR MaLR 1 365 0 4694 192 18 41 chr3 109635628 109637000 -117887578 + L1MB3 LINE L1 4852 6182 -1 472 375 80 16 chr3 109637090 109637591 -117886987 + L2 LINE L2 1777 2309 -1005 21881 183 19 7 chr3 109637612 109644080 -117880498 - L1PA12 LINE L1 -7 7599 1 314 243 49 62 chr3 109644081 109644225 -117880353 + L2 LINE L2 2297 2438 -876 2084 104 3 63 chr3 109644389 109644706 -117879872 + AluSc SINE Alu 1 298 -11 290 24 0 0 chr3 109644888 109644930 -117879648 + L1PA2 LINE L1 6113 6154 -1 24 0 0 0 chr3 109645791 109645815 -117878763 + AT_rich Low_complexity Low_complexity 1 24 0 235 304 0 14 chr3 109646087 109646156 -117878422 + MIR SINE MIR 10 77 -185 * 468 281 98 39 chr3 109646149 109646352 -117878226 - MIR SINE MIR -23 239 25 279 93 0 0 chr3 109647338 109647381 -117877197 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 217 200 0 0 chr3 109647923 109647958 -117876620 + (CA)n Simple_repeat Simple_repeat 2 36 0 491 268 106 0 chr3 109650032 109650174 -117874404 - MIR SINE MIR -101 161 5 251 357 61 33 chr3 109652422 109652635 -117871943 + L2 LINE L2 2316 2534 -780 362 323 52 7 chr3 109652756 109652911 -117871667 - L2 LINE L2 0 3313 3152 3115 214 14 0 chr3 109653066 109653734 -117870844 + L1P LINE L1 4421 5097 -1049 200 218 0 36 chr3 109654078 109654133 -117870445 + L2 LINE L2 3258 3310 -3 443 295 114 8 chr3 109654265 109654439 -117870139 + MIR SINE MIR 36 229 -33 26 30 0 0 chr3 109654529 109654562 -117870016 + AT_rich Low_complexity Low_complexity 1 33 0 1027 234 13 0 chr3 109656304 109656535 -117868043 - MIR SINE MIR -14 248 15 29 28 0 0 chr3 109656823 109656859 -117867719 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 109657171 109657192 -117867386 + AT_rich Low_complexity Low_complexity 1 21 0 12494 25 0 0 chr3 109658531 109660776 -117863802 + L1PA2 LINE L1 3910 6155 0 207 133 0 0 chr3 109660870 109660915 -117863663 + (A)n Simple_repeat Simple_repeat 1 45 0 21 71 0 0 chr3 109661571 109661613 -117862965 + AT_rich Low_complexity Low_complexity 1 42 0 212 196 18 0 chr3 109662126 109662182 -117862396 + (TA)n Simple_repeat Simple_repeat 1 57 0 308 94 19 0 chr3 109662194 109662247 -117862331 + (TA)n Simple_repeat Simple_repeat 2 55 0 303 28 0 0 chr3 109662298 109662334 -117862244 + (TA)n Simple_repeat Simple_repeat 2 37 0 2569 42 0 0 chr3 109662901 109663208 -117861370 + AluY SINE Alu 1 307 -4 319 202 21 0 chr3 109663342 109663436 -117861142 + CT-rich Low_complexity Low_complexity 5 100 0 2177 112 0 3 chr3 109663440 109663744 -117860834 - AluSq SINE Alu -10 303 1 29 0 0 0 chr3 109664381 109664410 -117860168 + AT_rich Low_complexity Low_complexity 1 29 0 400 209 55 18 chr3 109667151 109667261 -117857317 - MIR3 SINE MIR 0 208 95 180 0 0 0 chr3 109667540 109667560 -117857018 + (CAAAA)n Simple_repeat Simple_repeat 4 23 0 1425 105 13 54 chr3 109669831 109670070 -117854508 + MER30 DNA MER1_type 2 230 0 308 179 0 0 chr3 109670165 109670221 -117854357 + L1PA13 LINE L1 6101 6156 -7 285 243 68 14 chr3 109670328 109670402 -117854176 + MIR SINE MIR 113 190 -72 263 242 41 52 chr3 109670945 109671139 -117853439 + Charlie7 DNA MER1_type 2420 2611 -1 230 307 141 10 chr3 109671319 109671511 -117853067 + Charlie7 DNA MER1_type 442 658 -1954 339 230 128 34 chr3 109671607 109671811 -117852767 + Charlie7 DNA MER1_type 2384 2606 -6 2005 101 27 20 chr3 109671848 109672145 -117852433 - AluSx SINE Alu -13 299 1 350 203 34 0 chr3 109672349 109672467 -117852111 + (TCTA)n Simple_repeat Simple_repeat 1 122 0 256 318 23 0 chr3 109673856 109673944 -117850634 + MIR3 SINE MIR 118 207 -1 486 288 58 1 chr3 109674121 109674273 -117850305 + MIR SINE MIR 30 192 -62 303 354 0 10 chr3 109674667 109674766 -117849812 - Charlie8 DNA MER1_type -2318 99 2 316 307 58 51 chr3 109674773 109674910 -117849668 + L2 LINE L2 3134 3271 -1 22 0 0 0 chr3 109675025 109675047 -117849531 + AT_rich Low_complexity Low_complexity 1 22 0 1050 224 12 0 chr3 109675300 109675546 -117849032 - L1M4 LINE L1 -1487 4659 4411 2497 66 0 0 chr3 109675546 109675848 -117848730 - AluY SINE Alu -9 302 1 2060 125 3 25 chr3 109676777 109677097 -117847481 + AluSp SINE Alu 1 313 0 191 213 0 43 chr3 109677219 109677266 -117847312 + L2 LINE L2 3004 3048 -265 415 262 155 17 chr3 109677317 109677527 -117847051 + MIR SINE MIR 3 238 -24 302 29 0 0 chr3 109679282 109679317 -117845261 - U2 snRNA snRNA -153 35 1 633 306 77 8 chr3 109680524 109680759 -117843819 + MLT1J LTR MaLR 2 252 -259 446 275 90 28 chr3 109680793 109680971 -117843607 + MLT1J LTR MaLR 321 509 -2 207 0 0 0 chr3 109681289 109681312 -117843266 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 819 207 41 0 chr3 109681932 109682101 -117842477 + FRAM SINE Alu 1 176 0 300 361 52 62 chr3 109683022 109683426 -117841152 + L2 LINE L2 2358 2757 -557 240 373 78 4 chr3 109683835 109684079 -117840499 - L1MC/D LINE L1 -2141 5667 5406 * 1058 190 6 2 chr3 109684068 109684272 -117840306 - L1PA16 LINE L1 0 6165 5964 357 312 53 35 chr3 109684280 109684450 -117840128 - L1MC/D LINE L1 -727 5439 5267 244 341 29 52 chr3 109684622 109684795 -117839783 + L2 LINE L2 2915 3083 -189 183 310 46 35 chr3 109684789 109684876 -117839702 + L2 LINE L2 3224 3311 -2 * 648 13 0 0 chr3 109685433 109685512 -117839066 + L1PA2 LINE L1 6075 6153 -2 28 0 0 0 chr3 109685512 109685540 -117839038 + AT_rich Low_complexity Low_complexity 1 28 0 363 329 43 58 chr3 109685541 109685748 -117838830 - L3 LINE CR1 -422 1155 952 707 306 31 14 chr3 109686136 109686358 -117838220 + MIR SINE MIR 20 245 -17 2430 85 0 0 chr3 109686658 109686965 -117837613 + AluY SINE Alu 2 308 -3 226 287 92 23 chr3 109687785 109687872 -117836706 + L2 LINE L2 2565 2657 -657 2196 106 0 0 chr3 109688365 109688657 -117835921 - AluSg1 SINE Alu -17 292 1 26 0 0 0 chr3 109688919 109688945 -117835633 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr3 109689033 109689056 -117835522 + AT_rich Low_complexity Low_complexity 1 23 0 400 261 205 12 chr3 109689513 109689674 -117834904 - MIR SINE MIR -58 204 13 224 194 16 16 chr3 109689750 109689812 -117834766 + (TTTA)n Simple_repeat Simple_repeat 1 62 0 1353 199 119 49 chr3 109689946 109690399 -117834179 + MER31A LTR ERV1 1 485 0 409 353 47 13 chr3 109690623 109690858 -117833720 - L2 LINE L2 -480 2834 2592 1245 269 81 26 chr3 109690886 109691343 -117833235 + MER74B LTR ERVL 67 548 -74 331 170 60 50 chr3 109691256 109691356 -117833222 - MER88 LTR ERVL -283 181 81 * 430 243 35 65 chr3 109691382 109691551 -117833027 - MLT1C LTR MaLR -189 278 115 299 226 16 0 chr3 109691873 109691935 -117832643 - MIR SINE MIR -123 139 77 705 290 67 63 chr3 109692058 109692521 -117832057 + MLT1K LTR MaLR 48 581 -7 181 250 62 21 chr3 109692662 109692710 -117831868 + MIR3 SINE MIR 111 160 -48 2122 177 45 26 chr3 109692721 109693066 -117831512 + MSTB LTR MaLR 1 357 -69 2301 86 0 10 chr3 109693066 109693370 -117831208 - AluSc SINE Alu -8 301 1 2122 177 45 26 chr3 109693370 109693442 -117831136 + MSTB LTR MaLR 357 426 0 22 0 0 0 chr3 109694869 109694891 -117829687 + AT_rich Low_complexity Low_complexity 1 22 0 628 341 92 22 chr3 109695488 109695966 -117828612 + L2 LINE L2 2650 3184 -129 14277 131 29 16 chr3 109695966 109698353 -117826225 - Tigger1 DNA MER2_type 0 2418 1 628 341 92 22 chr3 109698353 109698493 -117826085 + L2 LINE L2 3184 3313 0 1081 171 0 30 chr3 109698524 109698723 -117825855 + MER3 DNA MER1_type 1 193 -16 358 218 27 27 chr3 109699056 109699166 -117825412 - HAL1 LINE L1 -1451 1056 947 247 221 32 21 chr3 109701405 109701500 -117823078 + HAL1 LINE L1 1236 1331 -1176 371 262 72 102 chr3 109701668 109702031 -117822547 + L1MC4a LINE L1 5311 5662 -459 419 171 0 45 chr3 109702249 109702360 -117822218 - L1MB7 LINE L1 -9 6175 6070 1851 198 31 67 chr3 109702367 109702418 -117822160 - MER74A LTR ERVL 0 622 571 2542 96 16 13 chr3 109702418 109702792 -117821786 + THE1C LTR MaLR 1 375 0 1851 198 31 67 chr3 109702792 109703168 -117821410 - MER74A LTR ERVL -51 571 143 7493 31 5 0 chr3 109703168 109704177 -117820401 + L1PA3 LINE L1 5143 6155 0 1851 198 31 67 chr3 109704177 109704305 -117820273 - MER74A LTR ERVL -479 143 12 264 93 23 0 chr3 109704309 109704352 -117820226 + MLT1J LTR MaLR 83 126 -385 604 291 56 32 chr3 109704409 109704660 -117819918 + MLT1J LTR MaLR 241 497 -14 1644 162 47 19 chr3 109705374 109705695 -117818883 + THE1C LTR MaLR 1 330 -45 284 316 179 42 chr3 109705787 109706100 -117818478 - L2 LINE L2 -353 2961 2606 274 141 16 16 chr3 109708172 109708236 -117816342 + CT-rich Low_complexity Low_complexity 3 66 0 5500 127 13 8 chr3 109708405 109709247 -117815331 - Tigger3(Golem) DNA MER2_type -1342 1687 842 948 148 0 7 chr3 109709249 109709440 -117815138 - AluSg/x SINE Alu 0 329 140 4677 160 34 2 chr3 109709441 109710260 -117814318 - Tigger3(Golem) DNA MER2_type -2184 845 1 765 248 118 4 chr3 109710262 109710508 -117814070 + L1MC4a LINE L1 5668 5941 -2101 * 1433 219 77 10 chr3 109710506 109710895 -117813683 + L1MC4a LINE L1 7024 7438 -370 43621 40 7 2 chr3 109710895 109717012 -117807566 + L1PA4 LINE L1 4 6152 -3 1786 82 12 16 chr3 109717012 109717268 -117807310 + MLT2A1 LTR ERVL 190 444 0 254 159 0 0 chr3 109717269 109717313 -117807265 + L1PA16 LINE L1 6114 6157 -9 206 118 0 0 chr3 109717353 109717387 -117807191 + (A)n Simple_repeat Simple_repeat 1 34 0 1294 175 15 160 chr3 109717387 109717623 -117806955 + L1MD3 LINE L1 7590 7802 -193 274 152 212 0 chr3 109717623 109717689 -117806889 + MADE1 DNA Mariner 1 80 0 1294 175 15 160 chr3 109717689 109717850 -117806728 + L1MD3 LINE L1 7802 7985 -10 207 365 77 0 chr3 109719145 109719326 -117805252 + L2 LINE L2 1222 1416 -1898 276 300 0 0 chr3 109719590 109719660 -117804918 + L2 LINE L2 3205 3274 -39 1899 160 0 0 chr3 109719662 109720125 -117804453 + AluSx SINE Alu 4 466 0 311 336 189 27 chr3 109720282 109721133 -117803445 + L2 LINE L2 1827 3022 -291 271 253 35 11 chr3 109721191 109721228 -117803350 + L2 LINE L2 3225 3260 -53 2244 117 0 0 chr3 109721228 109721526 -117803052 + AluSx SINE Alu 1 298 -14 271 253 35 11 chr3 109721526 109721575 -117803003 + L2 LINE L2 3260 3313 0 250 293 34 109 chr3 109722166 109722313 -117802265 - MIR3 SINE MIR -5 203 68 451 250 85 45 chr3 109724667 109724843 -117799735 + MIR SINE MIR 36 218 -44 441 281 136 30 chr3 109724852 109725051 -117799527 - MIR SINE MIR -3 259 40 595 261 98 73 chr3 109725055 109725411 -117799167 - MLT1G1 LTR MaLR -7 588 224 26 50 0 0 chr3 109725767 109725807 -117798771 + AT_rich Low_complexity Low_complexity 1 40 0 25 0 0 0 chr3 109726087 109726112 -117798466 + AT_rich Low_complexity Low_complexity 1 25 0 209 384 54 18 chr3 109727366 109727478 -117797100 - L2 LINE L2 -14 3258 3143 234 366 79 14 chr3 109727562 109727778 -117796800 - L2 LINE L2 -223 3049 2820 200 139 28 0 chr3 109728385 109728421 -117796157 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 22 0 0 0 chr3 109729463 109729485 -117795093 + AT_rich Low_complexity Low_complexity 1 22 0 784 267 72 5 chr3 109729723 109729944 -117794634 - MIR SINE MIR -26 236 1 15483 123 9 13 chr3 109732924 109735454 -117789124 - L1P LINE L1 -1646 4500 1983 543 271 41 21 chr3 109735841 109736142 -117788436 + MER90 LTR ERV1 3 328 -247 2095 239 17 17 chr3 109736142 109736661 -117787917 + LTR53 LTR ERVL 1 519 0 1132 327 95 39 chr3 109736670 109737398 -117787180 + L1M3a LINE L1 1 769 -5186 320 331 155 11 chr3 109737580 109737858 -117786720 + L1M3a LINE L1 388 705 -5250 235 378 10 10 chr3 109737962 109738060 -117786518 + L1M3a LINE L1 1171 1268 -5501 6393 248 38 43 chr3 109738090 109741892 -117782686 + L1M3a LINE L1 1171 4647 -2201 1408 197 45 0 chr3 109741936 109742205 -117782373 + AluJo SINE Alu 1 281 -31 2487 112 8 36 chr3 109742441 109742825 -117781753 + THE1C LTR MaLR 3 375 0 5687 138 47 5 chr3 109742825 109743881 -117780697 + L1M1 LINE L1 1624 2724 -4125 2419 87 0 0 chr3 109743881 109744180 -117780398 + AluY SINE Alu 1 299 -12 4077 189 21 47 chr3 109744182 109745859 -117778719 + L1M1 LINE L1 4871 6424 -581 * 4577 162 37 20 chr3 109745854 109746790 -117777788 + L1MA7 LINE L1 5338 6289 -2 1325 234 4 0 chr3 109746816 109747068 -117777510 + MER90 LTR ERV1 362 614 0 244 324 48 19 chr3 109747235 109747340 -117777238 + L2 LINE L2 3205 3312 -1 205 299 93 73 chr3 109747963 109748167 -117776411 + MIR SINE MIR 21 228 -34 287 309 159 8 chr3 109748814 109748940 -117775638 + MIR SINE MIR 84 228 -34 304 302 54 40 chr3 109749100 109749249 -117775329 + L2 LINE L2 2133 2283 -1031 1485 223 31 46 chr3 109749272 109749663 -117774915 - MLT1B LTR MaLR 0 390 6 1758 231 37 48 chr3 109749717 109750198 -117774380 + MLT1D LTR MaLR 1 476 -29 3399 107 12 46 chr3 109750394 109751066 -117773512 - L1MA6 LINE L1 0 6300 5536 1961 133 3 3 chr3 109751392 109751678 -117772900 + AluSx SINE Alu 1 286 -26 21 57 0 0 chr3 109751805 109751840 -117772738 + AT_rich Low_complexity Low_complexity 1 35 0 338 281 37 0 chr3 109752282 109752417 -117772161 - MER104 DNA Tc2 -39 141 2 12581 115 14 28 chr3 109752615 109755236 -117769342 + L1PA7 LINE L1 4 2631 -3830 20002 98 9 1 chr3 109755336 109759130 -117765448 + L1PA7 LINE L1 2626 6466 -3 21 0 0 0 chr3 109759367 109759388 -117765190 + AT_rich Low_complexity Low_complexity 1 21 0 382 210 80 80 chr3 109759438 109759600 -117764978 + L1ME4a LINE L1 5835 5996 -125 3298 124 61 15 chr3 109759606 109760146 -117764432 + MER61E LTR ERV1 1 565 -4 23 33 0 0 chr3 109760466 109760496 -117764082 + AT_rich Low_complexity Low_complexity 1 30 0 537 273 77 51 chr3 109760985 109761413 -117763165 - L1M4 LINE L1 -2552 3594 3156 305 163 0 0 chr3 109761413 109761462 -117763116 + LTR47A LTR ERVL 1 49 -403 2209 120 0 3 chr3 109761462 109761770 -117762808 - AluSc SINE Alu -2 307 1 698 101 20 0 chr3 109761895 109761994 -117762584 - AluSc SINE Alu -208 101 1 2015 173 61 35 chr3 109761994 109762080 -117762498 + LTR47A LTR ERVL 41 123 -329 2217 120 7 0 chr3 109762080 109762379 -117762199 + AluSx SINE Alu 3 303 -9 2015 173 61 35 chr3 109762379 109762686 -117761892 + LTR47A LTR ERVL 123 444 -8 387 260 72 84 chr3 109762697 109763186 -117761392 - L1M4 LINE L1 -2990 3156 2674 2261 157 48 29 chr3 109763893 109764313 -117760265 + MSTA LTR MaLR 1 428 0 4096 148 59 20 chr3 109764321 109765086 -117759492 + Tigger3(Golem) DNA MER2_type 2235 3029 0 1486 145 5 9 chr3 109765624 109765845 -117758733 - MER1B DNA MER1_type -8 331 112 263 217 91 63 chr3 109765722 109765865 -117758713 + Charlie3 DNA MER1_type 162 308 -2402 * 189 121 0 0 chr3 109766193 109766226 -117758352 + (T)n Simple_repeat Simple_repeat 1 33 0 192 40 0 0 chr3 109766507 109766532 -117758046 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 720 289 165 24 chr3 109766889 109767596 -117756982 - L2 LINE L2 -4 3309 2496 394 326 128 31 chr3 109768011 109768238 -117756340 + MIR SINE MIR 14 262 0 182 393 49 0 chr3 109768877 109768999 -117755579 + L3 LINE CR1 689 816 -761 341 193 28 50 chr3 109769117 109769298 -117755280 + (TA)n Simple_repeat Simple_repeat 1 177 0 1348 276 78 60 chr3 109769308 109769960 -117754618 + L3 LINE CR1 814 1477 -100 240 311 39 29 chr3 109769973 109770076 -117754502 - MIR SINE MIR -66 196 93 1097 244 106 6 chr3 109770922 109771271 -117753307 + MLT1B LTR MaLR 7 390 0 312 279 0 0 chr3 109771271 109771393 -117753185 + (CA)n Simple_repeat Simple_repeat 1 122 0 231 303 30 76 chr3 109771962 109772094 -117752484 - L2 LINE L2 -2085 1229 1104 478 250 114 11 chr3 109772125 109772309 -117752269 + MLT1K LTR MaLR 376 578 -10 212 167 21 0 chr3 109773964 109774012 -117750566 + (TA)n Simple_repeat Simple_repeat 2 50 0 2601 32 0 7 chr3 109774459 109774768 -117749810 - AluY SINE Alu -4 307 1 24 32 0 0 chr3 109775008 109775039 -117749539 + AT_rich Low_complexity Low_complexity 1 31 0 1441 156 31 17 chr3 109775984 109776273 -117748305 - AluSx SINE Alu -19 293 1 832 237 79 9 chr3 109776471 109776699 -117747879 + MLT1H LTR MaLR 1 244 -305 3192 147 39 34 chr3 109776702 109777266 -117747312 + LTR69 LTR ERVL 17 583 -5 1768 250 103 13 chr3 109777284 109777828 -117746750 + MLT1E LTR MaLR 1 593 0 30 45 0 0 chr3 109778414 109778458 -117746120 + AT_rich Low_complexity Low_complexity 1 44 0 2347 80 0 3 chr3 109778828 109779130 -117745448 - AluY SINE Alu -10 301 1 296 355 23 23 chr3 109779399 109779571 -117745007 - MIR SINE MIR -71 191 20 916 236 239 6 chr3 109781780 109782127 -117742451 + MSTC LTR MaLR 1 428 0 762 270 0 6 chr3 109783110 109783288 -117741290 + MER45A DNA AcHobo 1 177 -1 313 288 88 64 chr3 109783549 109783879 -117740699 + MLT1J LTR MaLR 111 448 -63 733 181 0 22 chr3 109785419 109785557 -117739021 - FLAM_A SINE Alu -2 140 6 204 132 26 0 chr3 109785817 109785855 -117738723 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 224 29 0 29 chr3 109786828 109786862 -117737716 + (CGGGG)n Simple_repeat Simple_repeat 2 34 0 7293 60 101 5 chr3 109787354 109788304 -117736274 + SVA Other Other 345 1385 -1 31 58 0 0 chr3 109788315 109788367 -117736211 + AT_rich Low_complexity Low_complexity 1 52 0 332 47 0 0 chr3 109790489 109790532 -117734046 + L1PA5 LINE L1 6109 6151 -3 324 122 27 27 chr3 109791030 109791104 -117733474 + CT-rich Low_complexity Low_complexity 4 77 0 26 30 0 0 chr3 109792758 109792791 -117731787 + AT_rich Low_complexity Low_complexity 1 33 0 207 268 0 0 chr3 109793986 109794042 -117730536 - MIR SINE MIR -125 137 82 260 260 279 0 chr3 109795520 109795624 -117728954 - MIR SINE MIR -78 184 52 206 368 132 0 chr3 109796283 109796351 -117728227 + L2 LINE L2 3137 3213 -59 551 215 203 39 chr3 109796385 109796717 -117727861 + MLT1C LTR MaLR 78 467 0 585 258 38 0 chr3 109797041 109797173 -117727405 - L2 LINE L2 0 3272 3136 245 346 66 11 chr3 109798818 109799000 -117725578 + L2 LINE L2 2422 2613 -701 22 94 0 0 chr3 109801269 109801333 -117723245 + AT_rich Low_complexity Low_complexity 1 64 0 211 336 123 20 chr3 109801361 109801507 -117723071 - L2 LINE L2 -2 3270 3110 1094 31 0 0 chr3 109803424 109803554 -117721024 + L1PA5 LINE L1 6017 6146 -8 24 0 0 0 chr3 109804118 109804142 -117720436 + AT_rich Low_complexity Low_complexity 1 24 0 938 295 28 4 chr3 109804367 109804621 -117719957 - MIR SINE MIR -2 260 1 773 276 14 45 chr3 109805129 109805350 -117719228 - MIR SINE MIR -2 260 47 723 313 64 19 chr3 109805718 109806092 -117718486 - LTR16A LTR ERVL 0 450 60 436 181 156 62 chr3 109806117 109806277 -117718301 + L2 LINE L2 3137 3311 -2 782 231 11 5 chr3 109807240 109807426 -117717152 - MER5A DNA MER1_type 0 189 3 217 387 0 36 chr3 109807427 109807564 -117717014 + L2 LINE L2 2870 3001 -271 1817 247 26 42 chr3 109807707 109808399 -117716179 + L1MD2 LINE L1 4376 5056 -1090 * 15871 35 2 7 chr3 109808395 109810368 -117714210 - L1P LINE L1 -1862 4284 2322 8267 36 0 1 chr3 109810368 109812125 -117712453 + L1PA4 LINE L1 4392 6147 -8 2573 197 24 14 chr3 109812136 109812863 -117711715 + L1MD2 LINE L1 5040 5775 -584 243 225 50 0 chr3 109812850 109812930 -117711648 + L1MC4 LINE L1 6620 6703 -1339 * 195 100 0 0 chr3 109812930 109812960 -117711618 + (CATATA)n Simple_repeat Simple_repeat 2 31 0 310 269 0 43 chr3 109812960 109813053 -117711525 - L1MC4 LINE L1 -1339 6703 6615 * 333 296 23 0 chr3 109812972 109813060 -117711518 + L1MC4 LINE L1 6614 6703 -1339 2059 223 78 21 chr3 109813090 109813437 -117711141 + L1MD2 LINE L1 5766 6158 -201 195 100 0 0 chr3 109813437 109813467 -117711111 + (CA)n Simple_repeat Simple_repeat 1 30 0 2059 223 78 21 chr3 109813467 109813679 -117710899 + L1MD2 LINE L1 6158 6356 -3 735 224 81 43 chr3 109815316 109815367 -117709211 - MIR SINE MIR -15 247 199 1640 183 33 48 chr3 109815367 109815760 -117708818 + MLT1B LTR MaLR 1 387 -3 735 224 81 43 chr3 109815760 109815918 -117708660 - MIR SINE MIR -63 199 30 2080 117 0 3 chr3 109816108 109816390 -117708188 + AluSq SINE Alu 1 281 -32 1064 29 35 24 chr3 109816390 109816560 -117708018 + (GAAA)n Simple_repeat Simple_repeat 1 172 0 762 235 53 6 chr3 109818932 109819102 -117705476 + MER45A DNA AcHobo 1 178 0 23 54 0 0 chr3 109819439 109819476 -117705102 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr3 109820105 109820130 -117704448 + AT_rich Low_complexity Low_complexity 1 25 0 2183 111 7 7 chr3 109821249 109821556 -117703022 - AluSx SINE Alu 0 312 6 21 57 0 0 chr3 109821669 109821704 -117702874 + AT_rich Low_complexity Low_complexity 1 35 0 229 282 35 24 chr3 109821740 109821825 -117702753 + L3b LINE CR1 1291 1376 -207 274 306 19 9 chr3 109822346 109822454 -117702124 - L2 LINE L2 -1358 1956 1848 227 344 76 38 chr3 109822544 109822675 -117701903 + MIR3 SINE MIR 5 140 -68 291 274 16 11 chr3 109823979 109824072 -117700506 - MIR SINE MIR -61 147 61 326 265 218 24 chr3 109825068 109825238 -117699340 + MIR SINE MIR 10 212 -50 4302 166 49 14 chr3 109826560 109828079 -117696499 + L1MA7 LINE L1 4628 6195 -96 2075 231 94 83 chr3 109828072 109828337 -117696241 + L1M4 LINE L1 3782 4043 -2103 * 1202 161 58 9 chr3 109828337 109828561 -117696017 - MER46A DNA MER2_type -1 235 1 2075 231 94 83 chr3 109828561 109829448 -117695130 + L1M4 LINE L1 4043 4947 -1199 297 0 0 0 chr3 109829476 109829509 -117695069 + (TG)n Simple_repeat Simple_repeat 1 33 0 234 267 0 27 chr3 109830705 109830780 -117693798 + MLT1K LTR MaLR 516 588 0 243 288 113 0 chr3 109830828 109830908 -117693670 - L2 LINE L2 -527 2787 2699 607 179 0 27 chr3 109832162 109832274 -117692304 + Tigger3(Golem) DNA MER2_type 2921 3029 0 324 0 0 0 chr3 109832289 109832325 -117692253 + (CA)n Simple_repeat Simple_repeat 2 37 0 1886 202 27 35 chr3 109832327 109832807 -117691771 + L1MA9 LINE L1 5793 6268 -44 2226 85 3 0 chr3 109832969 109833251 -117691327 + AluSx SINE Alu 5 287 -25 25 31 0 0 chr3 109834396 109834428 -117690150 + AT_rich Low_complexity Low_complexity 1 32 0 576 239 14 22 chr3 109834921 109835059 -117689519 + MER5B DNA MER1_type 33 169 -9 395 259 170 15 chr3 109835091 109835226 -117689352 + MER5A DNA MER1_type 31 186 -3 242 309 0 12 chr3 109835319 109835403 -117689175 + GA-rich Low_complexity Low_complexity 1 83 0 485 319 28 70 chr3 109836303 109836729 -117687849 + MLT1J LTR MaLR 102 509 -2 183 313 62 25 chr3 109837078 109837158 -117687420 - L2 LINE L2 0 3272 3190 1108 207 5 24 chr3 109838655 109838773 -117685805 + MER58A DNA MER1_type 1 115 -2305 5536 186 101 96 chr3 109838773 109840518 -117684060 + MER52A LTR ERV1 2 1755 0 1108 207 5 24 chr3 109840518 109840612 -117683966 + MER58A DNA MER1_type 115 209 -15 22 88 0 0 chr3 109840962 109841019 -117683559 + AT_rich Low_complexity Low_complexity 1 57 0 31 0 0 0 chr3 109841059 109841090 -117683488 + AT_rich Low_complexity Low_complexity 1 31 0 288 0 0 0 chr3 109841153 109841185 -117683393 + (TG)n Simple_repeat Simple_repeat 2 33 0 384 228 13 0 chr3 109841258 109841337 -117683241 - L2 LINE L2 0 3313 3234 681 318 58 17 chr3 109841717 109842084 -117682494 - L2 LINE L2 0 3313 2875 579 300 95 0 chr3 109842666 109842876 -117681702 + MIR SINE MIR 12 241 -21 2262 104 0 0 chr3 109844481 109844778 -117679800 + AluSx SINE Alu 1 297 -15 371 184 48 120 chr3 109844953 109845078 -117679500 - L2 LINE L2 -9 3304 3189 428 325 0 0 chr3 109845764 109845878 -117678700 - MIR3 SINE MIR -46 162 49 201 385 88 23 chr3 109845887 109846149 -117678429 + L3b LINE CR1 1281 1559 -24 347 89 18 0 chr3 109846274 109846330 -117678248 + (TG)n Simple_repeat Simple_repeat 2 58 0 279 300 0 0 chr3 109846359 109846429 -117678149 - L2 LINE L2 0 3272 3203 285 290 124 48 chr3 109846579 109847215 -117677363 - L1ME4a LINE L1 -84 6037 5319 27 49 0 0 chr3 109848348 109848389 -117676189 + AT_rich Low_complexity Low_complexity 1 41 0 333 0 0 0 chr3 109849400 109849437 -117675141 + (CA)n Simple_repeat Simple_repeat 2 38 0 26 0 0 49 chr3 109850073 109850094 -117674484 + AT_rich Low_complexity Low_complexity 1 21 -18 2195 113 0 0 chr3 109850094 109850405 -117674173 + AluY SINE Alu 1 311 0 26 0 0 49 chr3 109850405 109850424 -117674154 + AT_rich Low_complexity Low_complexity 21 39 0 28 61 0 0 chr3 109850631 109850680 -117673898 + AT_rich Low_complexity Low_complexity 1 49 0 21 36 0 0 chr3 109851452 109851480 -117673098 + AT_rich Low_complexity Low_complexity 1 28 0 568 230 103 18 chr3 109851700 109851876 -117672702 + MER45 DNA AcHobo 1 195 -758 312 161 0 0 chr3 109852123 109852185 -117672393 + (TG)n Simple_repeat Simple_repeat 2 63 0 1459 183 24 33 chr3 109852490 109852824 -117671754 + MER45B DNA AcHobo 706 1036 -4 2364 69 7 0 chr3 109853030 109853333 -117671245 - AluY SINE Alu -6 305 1 2023 131 7 7 chr3 109853503 109853808 -117670770 + AluSg SINE Alu 1 305 -5 445 354 186 29 chr3 109854505 109854850 -117669728 + L2 LINE L2 2911 3309 -4 184 225 25 0 chr3 109854963 109855003 -117669575 - L2 LINE L2 -94 3219 3179 43 85 0 0 chr3 109857992 109858098 -117666480 + AT_rich Low_complexity Low_complexity 1 106 0 1076 198 155 38 chr3 109858753 109859112 -117665466 - L1MD2 LINE L1 -91 6073 5831 1894 162 37 11 chr3 109859162 109859539 -117665039 + MLT1B LTR MaLR 1 387 -3 24 32 0 0 chr3 109861010 109861041 -117663537 + AT_rich Low_complexity Low_complexity 1 31 0 259 276 0 0 chr3 109861664 109861722 -117662856 - L2 LINE L2 -5 3308 3251 486 341 55 18 chr3 109861993 109862266 -117662312 - L2 LINE L2 -3 3310 3028 201 39 0 0 chr3 109862886 109862912 -117661666 + (A)n Simple_repeat Simple_repeat 1 26 0 224 301 75 11 chr3 109864617 109864710 -117659868 - MIR SINE MIR -72 136 66 385 139 0 42 chr3 109864807 109864879 -117659699 + Tigger2 DNA MER2_type 1 69 -2649 * 2509 160 9 20 chr3 109864869 109865320 -117659258 + Tigger2 DNA MER2_type 2273 2718 0 209 356 78 0 chr3 109865826 109865941 -117658637 + L2 LINE L2 2912 3035 -237 314 292 31 0 chr3 109866032 109866128 -117658450 - MIR SINE MIR -44 218 120 21 0 0 0 chr3 109868702 109868723 -117655855 + AT_rich Low_complexity Low_complexity 1 21 0 204 263 79 13 chr3 109869379 109869455 -117655123 - L2 LINE L2 -2 3270 3190 22 0 0 0 chr3 109870023 109870045 -117654533 + AT_rich Low_complexity Low_complexity 1 22 0 199 313 25 12 chr3 109870482 109870562 -117654016 - MIR SINE MIR -111 151 71 248 259 0 0 chr3 109870974 109871032 -117653546 - MER94 DNA DNA -2 132 75 184 327 131 0 chr3 109871044 109871151 -117653427 + MIR SINE MIR 142 262 0 25 51 0 0 chr3 109872076 109872115 -117652463 + AT_rich Low_complexity Low_complexity 1 39 0 8845 43 0 0 chr3 109873168 109875016 -117649562 - L1PA4 LINE L1 -4 6151 4300 46 54 0 0 chr3 109877003 109877077 -117647501 + AT_rich Low_complexity Low_complexity 1 74 0 22 0 0 0 chr3 109877723 109877745 -117646833 + AT_rich Low_complexity Low_complexity 1 22 0 237 211 0 0 chr3 109877760 109877812 -117646766 + (CATATA)n Simple_repeat Simple_repeat 3 54 0 19048 197 27 28 chr3 109877932 109879628 -117644950 + L1MA1 LINE L1 13 1709 -6012 396 0 0 0 chr3 109879628 109879672 -117644906 + (GA)n Simple_repeat Simple_repeat 1 44 0 19048 197 27 28 chr3 109879672 109885674 -117638904 + L1MA1 LINE L1 1709 7697 -24 180 323 0 32 chr3 109885954 109886016 -117638562 - MIR3 SINE MIR -135 73 14 21 0 0 0 chr3 109886049 109886070 -117638508 + AT_rich Low_complexity Low_complexity 1 21 0 21 82 0 0 chr3 109886151 109886200 -117638378 + AT_rich Low_complexity Low_complexity 1 49 0 248 317 149 28 chr3 109887291 109887540 -117637038 + L2 LINE L2 1773 2051 -1263 225 328 21 118 chr3 109887693 109887931 -117636647 + L2 LINE L2 2321 2535 -779 1909 173 0 0 chr3 109888675 109888987 -117635591 - AluSx SINE Alu 0 312 1 1651 104 4 0 chr3 109889306 109889547 -117635031 - L1PA8 LINE L1 -8 6164 5923 844 133 40 0 chr3 109890474 109890625 -117633953 - MSTA-int LTR MaLR -1494 157 1 848 177 131 20 chr3 109890627 109890825 -117633753 - MSTA LTR MaLR -2 426 207 459 123 0 0 chr3 109890827 109890908 -117633670 + (GA)n Simple_repeat Simple_repeat 2 82 0 250 346 107 18 chr3 109891021 109891293 -117633285 - L2 LINE L2 -1198 2116 1821 3979 158 28 10 chr3 109892494 109893198 -117631380 + MER50 LTR ERV1 1 717 -17 736 291 36 22 chr3 109893415 109893598 -117630980 - MIR SINE MIR -5 257 69 3264 194 66 11 chr3 109893598 109894339 -117630239 + LTR48 LTR ERV1 3 784 -3 736 291 36 22 chr3 109894339 109894378 -117630200 - MIR SINE MIR -193 69 32 3325 146 32 9 chr3 109894595 109895163 -117629415 + MER34C LTR ERV1 5 585 0 21 0 0 0 chr3 109895268 109895289 -117629289 + AT_rich Low_complexity Low_complexity 1 21 0 3472 158 15 27 chr3 109896234 109897350 -117627228 + L1MA5A LINE L1 4872 5791 -360 2322 108 22 6 chr3 109897201 109897562 -117627016 + L1PB1 LINE L1 5783 6149 -2 * 3400 166 60 20 chr3 109897570 109898213 -117626365 + MER72 LTR ERV1 11 876 -47 2253 104 0 0 chr3 109898213 109898511 -117626067 + AluSq SINE Alu 1 298 -15 3400 166 60 20 chr3 109898511 109898552 -117626026 + MER72 LTR ERV1 876 914 -9 204 97 0 0 chr3 109899706 109899737 -117624841 + (CA)n Simple_repeat Simple_repeat 1 31 0 603 312 14 5 chr3 109899758 109899973 -117624605 - MER113 DNA MER1_type? 0 521 305 24 0 0 0 chr3 109900013 109900037 -117624541 + AT_rich Low_complexity Low_complexity 1 24 0 2417 53 0 10 chr3 109900480 109900810 -117623768 + AluY SINE Alu 2 311 0 32 67 0 0 chr3 109900952 109901012 -117623566 + AT_rich Low_complexity Low_complexity 1 60 0 245 284 99 0 chr3 109901416 109901497 -117623081 + L2 LINE L2 2619 2707 -607 1424 140 45 35 chr3 109901500 109901814 -117622764 - MER33 DNA MER1_type -6 318 2 283 384 7 7 chr3 109901815 109901961 -117622617 + L2 LINE L2 2698 2843 -471 726 295 115 35 chr3 109902000 109902616 -117621962 + L2 LINE L2 2651 3313 0 181 333 302 0 chr3 109902780 109902972 -117621606 + L2 LINE L2 3015 3264 -8 1997 119 14 0 chr3 109903691 109903984 -117620594 - AluSx SINE Alu -15 297 1 1769 171 13 0 chr3 109904396 109904700 -117619878 - AluSc SINE Alu -1 308 1 7489 132 2 58 chr3 109905000 109906277 -117618301 + THE1C-int LTR MaLR 376 1580 0 2114 153 13 24 chr3 109906277 109906656 -117617922 + THE1C LTR MaLR 1 375 0 1675 191 3 3 chr3 109906684 109906978 -117617600 - AluJb SINE Alu -18 294 1 277 219 73 12 chr3 109906995 109907077 -117617501 + MER58 DNA MER1_type 2319 2405 -15 475 275 54 7 chr3 109907236 109907385 -117617193 - L1MA10 LINE L1 -9 6325 6170 * 838 213 42 21 chr3 109907370 109907657 -117616921 - L1MEc LINE L1 -3997 2399 2107 710 306 102 39 chr3 109907683 109908046 -117616532 - L1MEc LINE L1 -5975 421 36 725 278 21 11 chr3 109908171 109908422 -117616156 + L1M1 LINE L1 5435 5693 -503 2190 171 34 7 chr3 109908503 109908918 -117615660 + MSTB LTR MaLR 1 426 0 1239 118 6 0 chr3 109909334 109909504 -117615074 - AluSq SINE Alu -8 305 135 507 81 0 0 chr3 109910457 109910531 -117614047 - AluSp/q SINE Alu -2 311 238 1911 138 0 3 chr3 109910627 109910910 -117613668 + AluSx SINE Alu 1 282 -30 378 0 0 0 chr3 109910927 109910969 -117613609 + (CA)n Simple_repeat Simple_repeat 1 42 0 307 363 79 60 chr3 109911137 109911454 -117613124 + L1MDa LINE L1 3 325 -6215 273 295 9 48 chr3 109912995 109913100 -117611478 - MIR SINE MIR -6 256 156 536 287 43 43 chr3 109913100 109913218 -117611360 + MIR SINE MIR 20 140 -122 1522 189 45 28 chr3 109913218 109913577 -117611001 + MLT1A1 LTR MaLR 1 365 0 536 287 43 43 chr3 109913577 109913667 -117610911 + MIR SINE MIR 139 228 -34 771 276 101 18 chr3 109913718 109914004 -117610574 + MLT1G1 LTR MaLR 1 310 -285 289 220 0 0 chr3 109914124 109914183 -117610395 + MLT1G1 LTR MaLR 537 595 0 1983 172 3 26 chr3 109914350 109914734 -117609844 + THE1C LTR MaLR 1 375 0 427 273 104 13 chr3 109915351 109915505 -117609073 - MIR SINE MIR -54 208 41 228 35 0 0 chr3 109915553 109915582 -117608996 + (TG)n Simple_repeat Simple_repeat 1 29 0 1919 151 0 10 chr3 109916117 109916416 -117608162 - AluSx SINE Alu -16 296 1 409 323 37 6 chr3 109918917 109919081 -117605497 + MIR SINE MIR 89 257 -5 1152 238 13 0 chr3 109919193 109919428 -117605150 + MER8 DNA MER2_type 2 239 0 28 61 0 0 chr3 109919464 109919513 -117605065 + AT_rich Low_complexity Low_complexity 1 49 0 869 289 53 0 chr3 109920307 109920532 -117604046 + MIR SINE MIR 5 241 -21 849 304 43 12 chr3 109921985 109922314 -117602264 + MLT1I LTR MaLR 63 401 -8 278 220 0 17 chr3 109922315 109922374 -117602204 + MER91 DNA MER1_type 81 138 -2 23 0 0 0 chr3 109922600 109922623 -117601955 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr3 109923611 109923642 -117600936 + AT_rich Low_complexity Low_complexity 1 31 0 204 286 14 29 chr3 109923872 109923942 -117600636 + L3b LINE CR1 1285 1353 -230 19630 205 43 18 chr3 109924668 109928406 -117596172 + HERVL-B2 LTR ERVL 89 4057 -1707 2052 117 7 10 chr3 109928406 109928704 -117595874 + AluSx SINE Alu 1 297 -15 19630 205 43 18 chr3 109928704 109929935 -117594643 + HERVL-B2 LTR ERVL 4057 5255 -509 1435 122 128 50 chr3 109929937 109930258 -117594320 + MER4A LTR ERV1 1 346 -318 652 182 239 28 chr3 109930267 109930514 -117594064 + MER4C LTR ERV1 149 447 -18 2435 153 98 4 chr3 109930536 109930698 -117593880 + HERVL-B2 LTR ERVL 5257 5402 -362 192 40 0 0 chr3 109930698 109930723 -117593855 + (TG)n Simple_repeat Simple_repeat 2 26 0 2435 153 98 4 chr3 109930723 109931018 -117593560 + HERVL-B2 LTR ERVL 5402 5757 -7 1347 247 101 20 chr3 109931018 109931423 -117593155 + MLT2B2 LTR ERVL 1 438 -77 249 57 0 0 chr3 109931440 109931475 -117593103 + (TCTCTG)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr3 109932425 109932448 -117592130 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr3 109932630 109932665 -117591913 + AT_rich Low_complexity Low_complexity 1 35 0 253 140 60 0 chr3 109932907 109932957 -117591621 + MLT1D LTR MaLR 51 103 -402 23 78 0 0 chr3 109933167 109933218 -117591360 + AT_rich Low_complexity Low_complexity 1 51 0 185 254 36 18 chr3 109933296 109933351 -117591227 - L2 LINE L2 -4 3268 3213 770 169 71 13 chr3 109933377 109933531 -117591047 + L1MA9 LINE L1 5999 6161 -151 376 299 109 11 chr3 109934378 109934562 -117590016 + MIR SINE MIR 60 261 -1 * 440 378 25 0 chr3 109934558 109934754 -117589824 - L3 LINE CR1 -7 1570 1370 21 36 0 0 chr3 109935333 109935361 -117589217 + AT_rich Low_complexity Low_complexity 1 28 0 21 89 0 0 chr3 109936727 109936783 -117587795 + AT_rich Low_complexity Low_complexity 1 56 0 181 345 23 11 chr3 109937202 109937289 -117587289 + MIR SINE MIR 166 253 -9 255 262 0 0 chr3 109938502 109938563 -117586015 + MIR SINE MIR 175 235 -27 235 382 28 17 chr3 109938567 109938745 -117585833 + L2 LINE L2 2717 2896 -418 248 324 28 70 chr3 109938959 109939101 -117585477 + L2 LINE L2 3137 3272 0 542 385 19 8 chr3 109940024 109940281 -117584297 + MIR SINE MIR 3 262 0 24 53 0 0 chr3 109940303 109940341 -117584237 + AT_rich Low_complexity Low_complexity 1 38 0 330 349 13 26 chr3 109942358 109942510 -117582068 - L3 LINE CR1 -11 1566 1417 26 30 0 0 chr3 109944000 109944033 -117580545 + AT_rich Low_complexity Low_complexity 1 33 0 289 282 79 26 chr3 109944037 109944303 -117580275 - L1M4 LINE L1 -2924 3222 2943 202 214 0 129 chr3 109945235 109945305 -117579273 - L2 LINE L2 0 3272 3212 32 67 0 0 chr3 109945552 109945612 -117578966 + AT_rich Low_complexity Low_complexity 1 60 0 377 255 80 53 chr3 109945646 109945834 -117578744 - MIR SINE MIR -1 261 69 180 0 0 0 chr3 109946418 109946438 -117578140 + (T)n Simple_repeat Simple_repeat 1 20 0 1795 125 59 4 chr3 109947223 109947495 -117577083 - AluSx SINE Alu -25 287 1 361 295 101 10 chr3 109947936 109948143 -117576435 + L1M4 LINE L1 4226 4451 -1695 245 247 25 101 chr3 109948488 109948646 -117575932 - L1 LINE L1 -2315 3831 3686 21 71 0 0 chr3 109948862 109948904 -117575674 + AT_rich Low_complexity Low_complexity 1 42 0 45 0 0 0 chr3 109949175 109949220 -117575358 + AT_rich Low_complexity Low_complexity 1 45 0 238 319 11 21 chr3 109951148 109951242 -117573336 + L2 LINE L2 3221 3313 0 21 36 0 0 chr3 109951966 109951994 -117572584 + AT_rich Low_complexity Low_complexity 1 28 0 825 139 31 0 chr3 109951996 109952125 -117572453 + FLAM_C SINE Alu 1 133 -10 273 244 26 0 chr3 109952551 109952629 -117571949 + L1MA9 LINE L1 6179 6258 -54 1429 83 23 37 chr3 109952629 109952845 -117571733 + MER30 DNA MER1_type 1 213 -17 724 300 72 61 chr3 109954599 109955169 -117569409 + MLT1G LTR MaLR 15 590 0 339 344 0 0 chr3 109955521 109955611 -117568967 - MIR SINE MIR -169 93 4 2073 150 13 29 chr3 109956830 109957211 -117567367 + THE1C LTR MaLR 1 375 0 182 247 161 21 chr3 109957352 109957445 -117567133 + MIR SINE MIR 156 261 -1 27 81 0 0 chr3 109959681 109959743 -117564835 + AT_rich Low_complexity Low_complexity 1 62 0 682 356 10 10 chr3 109960708 109961017 -117563561 - LTR16B LTR ERVL 0 464 156 432 282 34 0 chr3 109961148 109961297 -117563281 + MER103 DNA DNA 13 166 0 2044 147 55 11 chr3 109961723 109962103 -117562475 - L1PA15 LINE L1 0 6165 5769 * 6984 217 18 10 chr3 109962095 109963276 -117561302 - L1PA13 LINE L1 -1 6162 4991 1963 153 40 8 chr3 109963276 109963629 -117560949 + THE1B LTR MaLR 1 364 0 9674 117 47 14 chr3 109963629 109964969 -117559609 + THE1B-int LTR MaLR 1 1399 -181 2255 102 3 7 chr3 109964969 109965272 -117559306 - AluSq SINE Alu -11 302 1 9674 117 47 14 chr3 109965272 109965461 -117559117 + THE1B-int LTR MaLR 1399 1580 0 2238 130 25 6 chr3 109965462 109965816 -117558762 + THE1B LTR MaLR 2 362 -2 6984 217 18 10 chr3 109965816 109967094 -117557484 - L1PA13 LINE L1 -1171 4992 3677 906 265 91 3 chr3 109967101 109967410 -117557168 - L1PA13 LINE L1 -3394 2752 2417 1351 299 87 51 chr3 109967480 109969486 -117555092 - L1MEd LINE L1 -825 5557 3479 392 249 44 100 chr3 109969974 109970151 -117554427 - L1MEd LINE L1 -2892 3490 3305 180 0 0 0 chr3 109970151 109970171 -117554407 + (TG)n Simple_repeat Simple_repeat 1 20 0 2007 117 0 3 chr3 109970171 109970453 -117554125 - AluSx SINE Alu -31 281 1 225 0 0 0 chr3 109970461 109970486 -117554092 + (TTTG)n Simple_repeat Simple_repeat 4 28 0 1998 115 7 0 chr3 109970493 109970772 -117553806 - AluSp SINE Alu -32 281 1 392 249 44 100 chr3 109970772 109970965 -117553613 - L1MEd LINE L1 -3089 3293 3124 316 259 52 9 chr3 109971115 109971231 -117553347 - L1MEd LINE L1 -4658 1726 1606 28 29 0 0 chr3 109971640 109971675 -117552903 + AT_rich Low_complexity Low_complexity 1 35 0 233 324 95 8 chr3 109971695 109971948 -117552630 - L1MEd LINE L1 -5233 1139 865 189 394 80 15 chr3 109972427 109972564 -117552014 - L2 LINE L2 -2 3270 3125 204 118 29 0 chr3 109973112 109973146 -117551432 + L2 LINE L2 3272 3306 -7 234 336 66 0 chr3 109973204 109973326 -117551252 + L2 LINE L2 2852 2981 -291 21 0 0 0 chr3 109973402 109973423 -117551155 + AT_rich Low_complexity Low_complexity 1 21 0 23 86 0 0 chr3 109975527 109975585 -117548993 + AT_rich Low_complexity Low_complexity 1 58 0 1032 206 35 123 chr3 109976055 109976565 -117548013 + MER4C LTR ERV1 1 465 0 198 71 0 0 chr3 109976776 109976804 -117547774 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 198 289 39 0 chr3 109977272 109977324 -117547254 - L3 LINE CR1 -5 1572 1519 1137 261 47 44 chr3 109977720 109978166 -117546412 + MER39 LTR ERV1 67 707 0 22 0 0 0 chr3 109979809 109979831 -117544747 + AT_rich Low_complexity Low_complexity 1 22 0 209 256 47 47 chr3 109980127 109980213 -117544365 - MIR SINE MIR -84 178 93 824 233 9 21 chr3 109980290 109980478 -117544100 + MIR SINE MIR 62 247 -15 314 231 125 29 chr3 109980471 109980575 -117544003 - L2 LINE L2 -10 3303 3190 * 1797 175 22 30 chr3 109980925 109981291 -117543287 + MLT1A1 LTR MaLR 1 363 -2 308 306 24 0 chr3 109981342 109981466 -117543112 + GA-rich Low_complexity Low_complexity 2 128 0 353 65 0 0 chr3 109981483 109981529 -117543049 - Alu SINE Alu -254 46 1 * 450 258 0 0 chr3 109981529 109981621 -117542957 + MLT1A1 LTR MaLR 34 125 -303 771 191 43 12 chr3 109981734 109981896 -117542682 + MLT1A1 LTR MaLR 199 365 0 25 0 0 0 chr3 109982051 109982076 -117542502 + AT_rich Low_complexity Low_complexity 1 25 0 266 65 0 22 chr3 109982284 109982330 -117542248 + (CA)n Simple_repeat Simple_repeat 2 46 0 252 0 0 0 chr3 109982418 109982446 -117542132 + (TG)n Simple_repeat Simple_repeat 2 29 0 1343 238 58 16 chr3 109983203 109983581 -117540997 + MSTD LTR MaLR 1 394 -2 24 32 0 0 chr3 109983717 109983748 -117540830 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3 109985234 109985262 -117539316 + AT_rich Low_complexity Low_complexity 1 28 0 1470 244 81 21 chr3 109985385 109985869 -117538709 + L1MC4a LINE L1 5392 5904 -1904 27 49 0 0 chr3 109986007 109986048 -117538530 + AT_rich Low_complexity Low_complexity 1 41 0 2386 64 0 0 chr3 109986048 109986345 -117538233 + AluY SINE Alu 1 297 -14 24 96 0 0 chr3 109986488 109986561 -117538017 + AT_rich Low_complexity Low_complexity 1 73 0 234 227 45 64 chr3 109986590 109986700 -117537878 + L1MC4a LINE L1 6401 6508 -1300 5646 209 37 0 chr3 109987211 109988511 -117536067 + L1MA5 LINE L1 2201 3548 -2598 6750 162 40 20 chr3 109988585 109990976 -117533602 + L1MA5 LINE L1 3860 6300 0 21 36 0 0 chr3 109992981 109993009 -117531569 + AT_rich Low_complexity Low_complexity 1 28 0 213 269 0 19 chr3 109993495 109993547 -117531031 + (CGTG)n Simple_repeat Simple_repeat 1 51 0 443 352 84 15 chr3 109993627 109993900 -117530678 - L3 LINE CR1 -9 1568 1277 230 315 23 31 chr3 109993914 109994044 -117530534 + T-rich Low_complexity Low_complexity 4 132 0 606 258 73 0 chr3 109994714 109994892 -117529686 + MLT1D LTR MaLR 1 191 -314 2534 183 6 16 chr3 109994892 109995692 -117528886 - L1MA6 LINE L1 -682 5618 4825 2242 170 29 0 chr3 109995690 109996101 -117528477 + L1MA6 LINE L1 5622 6044 -256 * 248 339 80 7 chr3 109998221 109998379 -117526199 - MIR SINE MIR -46 216 49 229 230 56 16 chr3 109999218 109999344 -117525234 + (TA)n Simple_repeat Simple_repeat 2 132 0 27 62 0 0 chr3 110000299 110000347 -117524231 + AT_rich Low_complexity Low_complexity 1 48 0 1930 170 125 8 chr3 110001641 110002024 -117522554 + MSTA LTR MaLR 1 428 0 8405 138 8 111 chr3 110002026 110003785 -117520793 + MSTA-int LTR MaLR 3 1580 0 1783 166 118 40 chr3 110003785 110004182 -117520396 + MSTA LTR MaLR 1 428 0 779 241 14 38 chr3 110004679 110004891 -117519687 - MER63A DNA MER1_type -3 207 1 268 178 0 0 chr3 110004978 110005023 -117519555 + MER103 DNA DNA 3 47 -119 636 325 43 20 chr3 110005381 110005636 -117518942 + MIR SINE MIR 2 262 0 349 313 38 25 chr3 110005942 110006102 -117518476 + MER103 DNA DNA 3 164 -2 577 292 73 26 chr3 110008268 110008501 -117516077 + MIR SINE MIR 4 247 -15 2234 126 0 0 chr3 110010016 110010325 -117514253 - AluSg SINE Alu -1 309 1 1611 146 115 9 chr3 110010463 110010784 -117513794 - THE1A LTR MaLR 0 355 1 11116 104 12 1 chr3 110010784 110012346 -117512232 - THE1A-int LTR MaLR 0 1580 1 2120 106 62 18 chr3 110012346 110012686 -117511892 - THE1A LTR MaLR 0 355 1 318 219 0 0 chr3 110013653 110013735 -117510843 - L1PB4 LINE L1 -2 6154 6073 818 268 57 22 chr3 110013753 110014070 -117510508 - L1ME1 LINE L1 -51 6115 5788 299 289 36 0 chr3 110014743 110014826 -117509752 + L2 LINE L2 3215 3300 -13 512 94 188 0 chr3 110014965 110015050 -117509528 - L1PA16 LINE L1 -254 5912 5812 * 1023 184 15 100 chr3 110015037 110015308 -117509270 + L1PA16 LINE L1 5912 6159 -7 448 320 61 48 chr3 110017139 110017451 -117507127 - L1ME3A LINE L1 -312 5858 5543 6741 113 32 15 chr3 110017472 110018512 -117506066 - MER11C LTR ERVK -14 1057 1 530 320 4 47 chr3 110018852 110019086 -117505492 + MIR SINE MIR 33 256 -6 792 337 151 24 chr3 110020227 110021043 -117503535 + L2 LINE L2 2379 3313 0 266 300 57 100 chr3 110022091 110022441 -117502137 - LTR33 LTR ERVL -28 493 159 827 284 41 7 chr3 110022648 110022893 -117501685 + MIR SINE MIR 1 250 -12 252 313 0 0 chr3 110023429 110023493 -117501085 + L2 LINE L2 3250 3313 0 1983 89 31 31 chr3 110024107 110024398 -117500180 + AluSc SINE Alu 1 291 -18 3226 178 8 2 chr3 110025605 110026216 -117498362 - L1MB3 LINE L1 -1 6182 5568 567 0 0 0 chr3 110026556 110026619 -117497959 + (TA)n Simple_repeat Simple_repeat 2 64 0 30 45 0 0 chr3 110027300 110027344 -117497234 + AT_rich Low_complexity Low_complexity 1 44 0 357 342 20 34 chr3 110027668 110027817 -117496761 + L2 LINE L2 3166 3312 -1 2339 143 40 24 chr3 110027921 110028341 -117496237 + MSTC LTR MaLR 1 427 -1 23 33 0 0 chr3 110029315 110029345 -117495233 + AT_rich Low_complexity Low_complexity 1 30 0 10751 159 53 36 chr3 110029387 110031688 -117492890 + L1M4c LINE L1 19 2357 -4027 391 152 0 15 chr3 110031688 110031754 -117492824 - MER8 DNA MER2_type 0 239 175 * 2586 157 25 2 chr3 110031744 110032183 -117492395 + Tigger2 DNA MER2_type 2269 2717 -1 2418 250 46 20 chr3 110032185 110032289 -117492289 + L1M4c LINE L1 2357 2457 -3925 1805 166 17 0 chr3 110032289 110032590 -117491988 + AluSx SINE Alu 1 306 -6 2418 250 46 20 chr3 110032590 110033328 -117491250 + L1M4c LINE L1 2457 3221 -3161 2901 128 29 7 chr3 110033328 110033774 -117490804 - MER1A DNA MER1_type 0 529 74 20453 152 38 17 chr3 110033777 110037563 -117487015 - L1 LINE L1 -3678 3887 19 338 257 38 9 chr3 110037628 110037733 -117486845 - L1ME LINE L1 -5063 1007 900 410 297 83 53 chr3 110038942 110039208 -117485370 + L3 LINE CR1 1279 1552 -25 484 325 22 67 chr3 110039501 110039858 -117484720 - MLT1L LTR MaLR -129 486 146 273 253 138 0 chr3 110040091 110040178 -117484400 - MLT1L LTR MaLR -516 99 1 23 0 0 0 chr3 110041091 110041114 -117483464 + AT_rich Low_complexity Low_complexity 1 23 0 299 297 0 0 chr3 110042361 110042425 -117482153 - L2 LINE L2 -49 3223 3160 22 0 0 0 chr3 110042564 110042586 -117481992 + AT_rich Low_complexity Low_complexity 1 22 0 703 291 97 42 chr3 110043029 110043338 -117481240 + MLT1J LTR MaLR 78 403 -108 198 162 0 59 chr3 110044854 110044922 -117479656 + CT-rich Low_complexity Low_complexity 4 67 0 706 246 21 12 chr3 110044962 110045172 -117479406 + L1ME1 LINE L1 5376 5584 -581 1226 175 15 106 chr3 110045172 110045503 -117479075 - MLT1A1 LTR MaLR -64 301 1 3952 242 58 52 chr3 110045504 110046861 -117477717 - MLT1A1-int LTR MaLR -1 1370 5 1190 202 66 58 chr3 110046865 110047069 -117477509 - MLT1A1 LTR MaLR 0 365 155 231 36 0 0 chr3 110047069 110047097 -117477481 + (GA)n Simple_repeat Simple_repeat 2 29 0 1190 202 66 58 chr3 110047097 110047254 -117477324 - MLT1A1 LTR MaLR -210 155 1 1026 236 64 4 chr3 110047647 110047897 -117476681 + L1ME1 LINE L1 5894 6158 -8 2151 83 0 0 chr3 110048529 110048806 -117475772 + AluSc SINE Alu 25 301 -8 526 301 163 42 chr3 110048969 110049200 -117475378 + MLT1L LTR MaLR 18 220 -395 1408 200 54 64 chr3 110049200 110049590 -117474988 + MLT1B LTR MaLR 5 390 0 526 301 163 42 chr3 110049590 110049787 -117474791 + MLT1L LTR MaLR 220 498 -117 338 315 185 11 chr3 110050474 110050652 -117473926 - MIR SINE MIR -36 226 18 305 322 86 68 chr3 110050964 110051392 -117473186 + MLT1K LTR MaLR 151 586 -2 240 35 0 0 chr3 110052048 110052077 -117472501 + (CA)n Simple_repeat Simple_repeat 2 30 0 411 296 131 28 chr3 110052104 110052280 -117472298 + L2 LINE L2 2246 2439 -875 3735 142 22 68 chr3 110053768 110054489 -117470089 + LTR8 LTR ERV1 1 688 -3 234 204 0 0 chr3 110054494 110054538 -117470040 + MLT1B LTR MaLR 1 44 -346 806 206 34 17 chr3 110054540 110054715 -117469863 + MLT1K-int LTR MaLR 68 245 -1490 797 217 94 102 chr3 110054715 110055088 -117469490 - MLT1A2 LTR MaLR 0 374 5 410 162 0 0 chr3 110055091 110055159 -117469419 + MLT1A2 LTR MaLR 303 370 -4 489 265 0 7 chr3 110055167 110055303 -117469275 + L1M4 LINE L1 2701 2835 -3311 301 242 54 81 chr3 110055303 110055452 -117469126 + L1M4 LINE L1 3157 3301 -2845 896 221 0 11 chr3 110055512 110055693 -117468885 + FRAM SINE Alu 1 176 0 2255 245 31 35 chr3 110055729 110056380 -117468198 + L1M4 LINE L1 3519 4168 -1978 1688 175 3 19 chr3 110056380 110056695 -117467883 + AluJo SINE Alu 1 310 -2 2255 245 31 35 chr3 110056695 110056777 -117467801 + L1M4 LINE L1 4168 4249 -1897 240 319 84 96 chr3 110057235 110057664 -117466914 - L2 LINE L2 -652 2662 2239 287 285 122 0 chr3 110058876 110058999 -117465579 - LTR16C LTR ERVL -9 482 345 180 0 0 0 chr3 110059184 110059204 -117465374 + (A)n Simple_repeat Simple_repeat 1 20 0 6346 80 21 0 chr3 110059615 110061158 -117463420 - L1PA10 LINE L1 -5 6163 4584 3416 111 0 2 chr3 110061165 110061660 -117462918 + L1PA10 LINE L1 4064 4557 -1589 588 154 6 148 chr3 110061935 110062104 -117462474 + MLT2B3 LTR ERVL 410 554 0 37 0 0 0 chr3 110062983 110063020 -117461558 + AT_rich Low_complexity Low_complexity 1 37 0 726 275 55 17 chr3 110063867 110064103 -117460475 + MIR SINE MIR 13 257 -5 385 91 13 13 chr3 110066237 110066314 -117458264 + (CA)n Simple_repeat Simple_repeat 2 78 0 2195 123 0 3 chr3 110067438 110067739 -117456839 + AluSc SINE Alu 3 302 -7 10711 212 47 90 chr3 110068076 110071259 -117453319 + L1MA4A LINE L1 1 3044 -3804 3394 211 148 34 chr3 110071263 110072549 -117452029 + MER52A LTR ERV1 12 1105 -184 855 203 29 58 chr3 110072558 110072828 -117451750 + MER52A LTR ERV1 879 1108 -170 4382 188 29 44 chr3 110072840 110073762 -117450816 + MER52A LTR ERV1 882 1755 0 756 157 66 0 chr3 110073762 110073928 -117450650 + L1MA4A LINE L1 3040 3216 -3632 498 249 11 6 chr3 110073919 110074096 -117450482 + L1M2 LINE L1 1942 2119 -4730 * 2671 233 80 21 chr3 110074107 110075037 -117449541 + L1M2 LINE L1 3225 4208 -2640 495 290 43 0 chr3 110075042 110075204 -117449374 + L1MA4A LINE L1 3243 3411 -3437 477 244 0 0 chr3 110075308 110075439 -117449139 + L1PA16 LINE L1 3112 3242 -2904 5169 133 21 18 chr3 110075440 110077215 -117447363 + L1PA16 LINE L1 4357 6153 -13 207 100 0 0 chr3 110077216 110077246 -117447332 + (T)n Simple_repeat Simple_repeat 1 30 0 7290 160 33 79 chr3 110077248 110077804 -117446774 + L1MA4A LINE L1 4202 4782 -2223 675 67 0 0 chr3 110077804 110077929 -117446649 - AluY SINE Alu 0 317 193 7290 160 33 79 chr3 110077929 110080003 -117444575 + L1MA4A LINE L1 4782 6786 -219 1437 79 0 5 chr3 110081533 110081723 -117442855 - L1PA8 LINE L1 -15 6157 5969 22 56 0 0 chr3 110081994 110082030 -117442548 + AT_rich Low_complexity Low_complexity 1 36 0 888 123 7 32 chr3 110082290 110082444 -117442134 - L1PA8 LINE L1 0 6172 6023 1248 82 18 0 chr3 110082545 110082716 -117441862 - L1PA8 LINE L1 -547 5584 5411 606 241 21 14 chr3 110083149 110083294 -117441284 + MIR SINE MIR 106 251 -11 360 133 0 0 chr3 110083712 110083772 -117440806 + (CA)n Simple_repeat Simple_repeat 1 60 0 351 266 105 42 chr3 110084357 110084500 -117440078 - MIR3 SINE MIR -7 201 50 422 267 22 15 chr3 110084589 110084724 -117439854 - MIR SINE MIR -3 259 124 1894 157 7 3 chr3 110084789 110085089 -117439489 + AluSq SINE Alu 1 301 -12 25 65 0 0 chr3 110085691 110085737 -117438841 + AT_rich Low_complexity Low_complexity 1 46 0 391 271 47 0 chr3 110086326 110086433 -117438145 + MER70B LTR ERVL 459 570 -8 297 187 21 0 chr3 110086865 110086926 -117437652 + L1MA7 LINE L1 5714 5780 -386 2781 145 34 32 chr3 110086926 110087423 -117437155 + MER7C DNA MER2_type 1 498 -104 2468 77 97 28 chr3 110087423 110087815 -117436763 + LTR7 LTR ERV1 1 419 -31 12088 101 12 19 chr3 110087819 110089665 -117434913 + HERVH LTR ERV1 1155 2987 -4726 935 139 6 47 chr3 110089637 110089809 -117434769 + HERVH LTR ERV1 3126 3290 -4423 * 3491 137 9 13 chr3 110089799 110090791 -117433787 + HERVH LTR ERV1 3492 4419 -2750 1997 209 31 86 chr3 110090961 110091575 -117433003 + MLT1E2 LTR MaLR 47 626 0 1416 173 24 0 chr3 110092407 110092696 -117431882 + L1MA7 LINE L1 5996 6291 0 2037 138 3 0 chr3 110092858 110093156 -117431422 - AluSp SINE Alu -14 299 1 45 0 0 0 chr3 110094580 110094625 -117429953 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr3 110094666 110094689 -117429889 + AT_rich Low_complexity Low_complexity 1 23 0 599 311 65 92 chr3 110095175 110095609 -117428969 + L2 LINE L2 2511 2932 -382 264 293 50 20 chr3 110095706 110095805 -117428773 + L2 LINE L2 3163 3264 -8 1572 174 64 7 chr3 110095903 110096185 -117428393 + AluSx SINE Alu 1 298 -14 205 364 12 99 chr3 110097710 110097872 -117426706 + L2 LINE L2 3123 3270 -2 338 313 23 8 chr3 110098035 110098166 -117426412 - MIR SINE MIR -13 249 117 215 263 40 79 chr3 110098167 110098243 -117426335 + MIR SINE MIR 4 76 -186 551 228 86 34 chr3 110099009 110099178 -117425400 + MER5B DNA MER1_type 3 177 -1 14343 179 22 25 chr3 110100284 110104540 -117420038 + L1MA3 LINE L1 18 4646 -2919 8142 159 8 21 chr3 110104538 110106125 -117418453 + L1MA3 LINE L1 5210 6761 -963 * 1709 143 25 0 chr3 110106125 110106411 -117418167 + AluSx SINE Alu 20 312 0 8142 159 8 21 chr3 110106411 110107363 -117417215 + L1MA3 LINE L1 6761 7724 0 260 246 0 15 chr3 110107453 110107518 -117417060 + L1MA8 LINE L1 5951 6014 -277 1311 13 0 6 chr3 110107722 110107879 -117416699 - L1PA2 LINE L1 -4 6151 5996 678 104 80 0 chr3 110107879 110108000 -117416578 + L1MA8 LINE L1 6151 6285 -6 793 276 10 10 chr3 110108066 110108269 -117416309 - LTR16C LTR ERVL -122 369 167 22 56 0 0 chr3 110108731 110108767 -117415811 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr3 110109401 110109423 -117415155 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr3 110109594 110109623 -117414955 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr3 110110241 110110270 -117414308 + AT_rich Low_complexity Low_complexity 1 29 0 610 302 151 24 chr3 110110270 110110681 -117413897 - L1ME3A LINE L1 -298 5872 5410 400 319 71 81 chr3 110110772 110110835 -117413743 + MLT1I LTR MaLR 85 147 -262 1864 119 27 30 chr3 110110835 110111303 -117413275 - AluSx SINE Alu 0 467 1 400 319 71 81 chr3 110111303 110111548 -117413030 + MLT1I LTR MaLR 147 391 -18 352 293 147 19 chr3 110112084 110112241 -117412337 + MIR SINE MIR 84 260 -2 22 35 0 0 chr3 110112306 110112335 -117412243 + AT_rich Low_complexity Low_complexity 1 29 0 199 182 0 0 chr3 110112734 110112767 -117411811 - L2 LINE L2 -20 3293 3261 195 309 119 0 chr3 110113152 110113236 -117411342 + L2 LINE L2 3179 3272 0 1181 264 96 39 chr3 110113426 110113914 -117410664 - LTR40a LTR ERVL -3 516 1 222 161 65 0 chr3 110114280 110114342 -117410236 + (TTATA)n Simple_repeat Simple_repeat 5 70 0 31 0 0 0 chr3 110115516 110115547 -117409031 + AT_rich Low_complexity Low_complexity 1 31 0 1524 181 22 18 chr3 110115695 110115972 -117408606 - AluJo SINE Alu -22 290 13 1422 208 94 3 chr3 110116109 110116469 -117408109 - L1MD3 LINE L1 0 7995 7603 23 33 0 0 chr3 110116552 110116582 -117407996 + AT_rich Low_complexity Low_complexity 1 30 0 214 317 158 24 chr3 110116674 110116838 -117407740 - L2 LINE L2 0 3272 3087 28 0 0 0 chr3 110117225 110117253 -117407325 + AT_rich Low_complexity Low_complexity 1 28 0 410 326 109 66 chr3 110117315 110118057 -117406521 - L2 LINE L2 -604 2710 1937 22 0 0 0 chr3 110118696 110118718 -117405860 + AT_rich Low_complexity Low_complexity 1 22 0 627 303 91 75 chr3 110119086 110119604 -117404974 + HAL1 LINE L1 1632 2157 -350 244 228 139 63 chr3 110119647 110119805 -117404773 + HAL1 LINE L1 2284 2453 -54 24 53 0 0 chr3 110119828 110119866 -117404712 + AT_rich Low_complexity Low_complexity 1 38 0 1947 129 122 37 chr3 110119993 110120403 -117404175 + MER65A LTR ERV1 1 445 0 1621 223 48 11 chr3 110120818 110120836 -117403742 - L1 LINE L1 -1681 4465 4449 576 200 9 0 chr3 110120836 110120946 -117403632 - L1PB4 LINE L1 -5 6151 6041 1621 223 48 11 chr3 110120946 110121443 -117403135 - L1 LINE L1 -1697 4449 3887 1438 232 36 6 chr3 110121436 110121798 -117402780 - L1 LINE L1 -2589 3557 3185 * 3167 120 19 0 chr3 110121801 110122284 -117402294 - MER75 DNA T2_type -22 492 1 4824 243 64 30 chr3 110122308 110124732 -117399846 - L1PBb LINE L1 -2976 3873 1351 436 222 61 0 chr3 110124716 110124815 -117399763 - L1PBb LINE L1 -5272 1577 1473 * 280 372 16 28 chr3 110124815 110125065 -117399513 - L1PBb LINE L1 -5285 1564 1318 440 343 186 10 chr3 110125516 110125720 -117398858 - L1PBb LINE L1 -5892 958 719 1078 297 108 13 chr3 110125819 110126274 -117398304 - L1PBb LINE L1 -6351 499 2 625 60 0 0 chr3 110126315 110126398 -117398180 - L1PA5 LINE L1 -2 6152 6070 550 273 83 39 chr3 110126596 110126801 -117397777 - MIR SINE MIR -16 246 33 25 0 0 0 chr3 110127089 110127114 -117397464 + AT_rich Low_complexity Low_complexity 1 25 0 343 266 17 8 chr3 110127320 110127440 -117397138 - L1MCa LINE L1 -865 1922 1586 1293 173 0 48 chr3 110127488 110127736 -117396842 - AluJo SINE Alu -76 236 1 361 345 88 31 chr3 110127852 110128113 -117396465 - L1MCa LINE L1 -5283 1133 858 204 40 0 0 chr3 110128289 110128314 -117396264 + (TG)n Simple_repeat Simple_repeat 1 25 0 276 298 229 0 chr3 110128472 110128603 -117395975 + MER5A DNA MER1_type 26 186 -3 602 223 62 73 chr3 110129070 110129354 -117395224 + LTR48 LTR ERV1 11 367 -411 486 350 0 17 chr3 110129683 110129863 -117394715 + MER5B DNA MER1_type 1 177 -1 241 301 0 14 chr3 110131887 110131960 -117392618 + L2 LINE L2 3242 3313 0 216 133 44 0 chr3 110132849 110132894 -117391684 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1471 218 93 16 chr3 110134143 110134593 -117389985 + MER31A LTR ERV1 1 485 0 2242 84 19 10 chr3 110134646 110134954 -117389624 - AluY SINE Alu 0 311 1 1555 186 62 3 chr3 110135019 110135309 -117389269 + AluJb SINE Alu 5 311 -1 1555 150 14 46 chr3 110135372 110135652 -117388926 + AluSx SINE Alu 21 291 -21 3063 147 40 0 chr3 110135757 110136255 -117388323 + L1PB3 LINE L1 5594 6111 -43 1138 199 40 38 chr3 110136358 110136703 -117387875 + MER39 LTR ERV1 363 585 0 26 30 0 0 chr3 110137961 110137994 -117386584 + AT_rich Low_complexity Low_complexity 1 33 0 347 21 43 0 chr3 110139316 110139363 -117385215 + (TTTC)n Simple_repeat Simple_repeat 2 50 0 261 57 0 0 chr3 110139898 110139933 -117384645 + (TC)n Simple_repeat Simple_repeat 2 36 0 321 238 148 0 chr3 110139941 110140042 -117384536 + MER63 DNA MER1_type 6 747 -89 233 323 0 16 chr3 110140067 110140129 -117384449 + MER63 DNA MER1_type 994 1054 -7 23 54 0 0 chr3 110142886 110142923 -117381655 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr3 110143435 110143463 -117381115 + AT_rich Low_complexity Low_complexity 1 28 0 422 321 119 41 chr3 110144536 110144879 -117379699 + L3 LINE CR1 405 774 -803 197 275 83 28 chr3 110144913 110145022 -117379556 + L3 LINE CR1 888 1002 -575 314 253 91 10 chr3 110145135 110145234 -117379344 - MIR SINE MIR -70 192 86 198 348 36 0 chr3 110145344 110145456 -117379122 + L3 LINE CR1 1149 1264 -313 208 387 126 0 chr3 110145462 110145573 -117379005 + L3 LINE CR1 1430 1554 -23 2914 189 24 0 chr3 110146218 110147124 -117377454 + L1MA9 LINE L1 4746 5672 -619 3005 154 57 14 chr3 110147224 110147854 -117376724 + L1MA9 LINE L1 5652 6308 -4 195 42 0 0 chr3 110148874 110148898 -117375680 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 26 0 0 0 chr3 110149495 110149521 -117375057 + AT_rich Low_complexity Low_complexity 1 26 0 180 111 0 0 chr3 110150331 110150358 -117374220 + (GA)n Simple_repeat Simple_repeat 2 28 0 619 351 50 24 chr3 110150426 110150850 -117373728 + LTR16A LTR ERVL 16 450 0 186 260 0 20 chr3 110150983 110151033 -117373545 + L2 LINE L2 3263 3311 -2 237 321 99 38 chr3 110153099 110153231 -117371347 + MIR SINE MIR 7 147 -61 2007 139 0 13 chr3 110153233 110153535 -117371043 + AluSx SINE Alu 1 298 -14 312 236 110 55 chr3 110154239 110154366 -117370212 + L2 LINE L2 3180 3313 0 203 264 19 0 chr3 110154627 110154680 -117369898 + L3 LINE CR1 1289 1342 -235 254 324 40 0 chr3 110155354 110155428 -117369150 + L3 LINE CR1 1392 1468 -109 23 0 0 0 chr3 110156910 110156933 -117367645 + AT_rich Low_complexity Low_complexity 1 23 0 2657 144 89 7 chr3 110157171 110157621 -117366957 - LTR1 LTR ERV1 0 785 299 2089 203 12 2 chr3 110157978 110158397 -117366181 + L1P4 LINE L1 2214 2636 -3510 10379 170 11 17 chr3 110158497 110160899 -117363679 + L1P4 LINE L1 3349 5735 -426 1392 287 31 14 chr3 110161022 110161437 -117363141 - MLT1H1 LTR MaLR -30 525 104 258 258 43 54 chr3 110161503 110161596 -117362982 - MIR SINE MIR -77 131 40 270 243 122 47 chr3 110162120 110162227 -117362351 + MIR3 SINE MIR 86 200 -8 201 317 87 19 chr3 110162857 110162961 -117361617 + MIR SINE MIR 31 141 -121 203 79 26 0 chr3 110163168 110163206 -117361372 + (TA)n Simple_repeat Simple_repeat 2 40 0 995 316 51 16 chr3 110163503 110163936 -117360642 - MLT1J2 LTR MaLR -2 448 1 23 33 0 0 chr3 110164392 110164422 -117360156 + AT_rich Low_complexity Low_complexity 1 30 0 472 284 116 28 chr3 110165174 110165389 -117359189 + MIR SINE MIR 3 236 -26 180 0 0 0 chr3 110166008 110166028 -117358550 + (TTTTG)n Simple_repeat Simple_repeat 3 22 0 22 88 0 0 chr3 110166179 110166236 -117358342 + AT_rich Low_complexity Low_complexity 1 57 0 238 121 138 0 chr3 110166284 110166342 -117358236 - L1MA5 LINE L1 -114 6183 6118 372 119 0 0 chr3 110167117 110167139 -117357439 + (TG)n Simple_repeat Simple_repeat 1 81 0 372 119 0 0 chr3 110167139 110167198 -117357380 + (TG)n Simple_repeat Simple_repeat 2 60 0 591 287 114 5 chr3 110167461 110167516 -117357062 - MLT1J LTR MaLR -233 278 230 534 235 9 138 chr3 110167516 110167733 -117356845 + MER5A DNA MER1_type 1 189 0 591 287 114 5 chr3 110167733 110167879 -117356699 - MLT1J LTR MaLR -281 230 55 1705 68 5 0 chr3 110167981 110168203 -117356375 - L1PA5 LINE L1 -2 6152 5930 512 17 0 0 chr3 110168203 110168263 -117356315 + L1P2 LINE L1 5428 5487 -667 301 348 39 22 chr3 110168371 110168552 -117356026 - MIR SINE MIR -51 211 28 190 315 97 42 chr3 110169769 110169869 -117354709 - MIR SINE MIR -12 250 136 2043 143 0 3 chr3 110169869 110170176 -117354402 - AluSx SINE Alu -6 306 1 190 315 97 42 chr3 110170176 110170240 -117354338 - MIR SINE MIR -126 136 77 245 236 28 28 chr3 110170368 110170440 -117354138 + MLT1I LTR MaLR 130 201 -208 384 75 0 75 chr3 110221011 110221078 -117303500 - Alu SINE Alu -239 62 1 24 32 0 0 chr3 110221137 110221168 -117303410 + AT_rich Low_complexity Low_complexity 1 31 0 1937 122 3 14 chr3 110222312 110222626 -117301952 + AluSq SINE Alu 1 313 0 23 54 0 0 chr3 110222685 110222722 -117301856 + AT_rich Low_complexity Low_complexity 1 37 0 283 206 294 62 chr3 110224063 110224209 -117300369 - MIR SINE MIR -76 186 7 377 256 64 16 chr3 110224570 110224695 -117299883 + MER94 DNA DNA 1 131 -3 429 325 0 45 chr3 110225627 110225784 -117298794 - MER5A DNA MER1_type -5 184 35 297 0 0 0 chr3 110226714 110226747 -117297831 + (TG)n Simple_repeat Simple_repeat 2 34 0 422 250 0 0 chr3 110227033 110227117 -117297461 - MER69 DNA AcHobo -93 84 1 261 284 54 0 chr3 110227861 110227935 -117296643 - MER58C DNA MER1_type -18 197 120 351 349 114 28 chr3 110228362 110228686 -117295892 - L2 LINE L2 0 3272 2921 651 286 79 0 chr3 110228714 110228892 -117295686 + MIR SINE MIR 7 198 -64 546 241 62 0 chr3 110229089 110229201 -117295377 + MER5B DNA MER1_type 58 176 -2 232 338 53 24 chr3 110229255 110229428 -117295150 - MER5B DNA MER1_type -11 167 1 21 0 0 0 chr3 110229466 110229487 -117295091 + AT_rich Low_complexity Low_complexity 1 21 0 203 377 113 25 chr3 110230240 110230399 -117294179 - L3 LINE CR1 -5 1572 1400 1184 210 79 22 chr3 110230943 110231318 -117293260 + MSTB1 LTR MaLR 1 431 -1 915 271 92 31 chr3 110231586 110232195 -117292383 + L2 LINE L2 2626 3251 -62 231 347 100 41 chr3 110232805 110233308 -117291270 - L3 LINE CR1 -841 736 147 2473 78 0 0 chr3 110233368 110233676 -117290902 - AluY SINE Alu -3 308 1 23 68 0 0 chr3 110233698 110233742 -117290836 + AT_rich Low_complexity Low_complexity 1 44 0 987 297 130 18 chr3 110234122 110234862 -117289716 - L1M4 LINE L1 -1744 4402 3580 606 291 65 5 chr3 110234890 110235089 -117289489 + L2 LINE L2 1273 1483 -1831 2137 158 58 17 chr3 110238399 110238810 -117285768 - MSTA LTR MaLR 0 428 1 1932 143 148 8 chr3 110238920 110239291 -117285287 + MSTA LTR MaLR 1 423 -5 237 149 14 27 chr3 110240763 110240837 -117283741 + (TTA)n Simple_repeat Simple_repeat 1 73 0 290 313 215 21 chr3 110241325 110241804 -117282774 + L2 LINE L2 1684 2255 -1059 2513 184 24 4 chr3 110241851 110242307 -117282271 + L1M3f LINE L1 6 470 -4858 2617 196 14 5 chr3 110242307 110242872 -117281706 + L1MA4 LINE L1 5726 6295 -5 186 43 0 0 chr3 110242902 110242925 -117281653 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 453 337 106 41 chr3 110243233 110243774 -117280804 + L2 LINE L2 2712 3294 -19 427 255 60 49 chr3 110243880 110244064 -117280514 - LTR16A1 LTR ERVL -229 228 43 258 346 75 32 chr3 110244087 110244275 -117280303 - MIR SINE MIR -47 215 20 1842 195 25 8 chr3 110244692 110245051 -117279527 - MLT1A1 LTR MaLR 0 365 1 22 35 0 0 chr3 110245054 110245083 -117279495 + AT_rich Low_complexity Low_complexity 1 29 0 1005 323 11 9 chr3 110247859 110248312 -117276266 - BSR/Beta Satellite Satellite -44 453 1 504 222 0 0 chr3 110248329 110248419 -117276159 - BSR/Beta Satellite Satellite -20 359 270 7448 34 0 0 chr3 110248433 110249817 -117274761 - L1PA4 LINE L1 0 6155 4773 288 294 65 20 chr3 110250849 110251002 -117273576 - L1ME LINE L1 -426 5695 5536 451 244 127 82 chr3 110251160 110251451 -117273127 - L1ME1 LINE L1 -10 6156 5853 25 0 0 0 chr3 110251523 110251548 -117273030 + AT_rich Low_complexity Low_complexity 1 25 0 36 62 0 0 chr3 110251559 110251623 -117272955 + AT_rich Low_complexity Low_complexity 1 64 0 22 0 0 0 chr3 110252094 110252116 -117272462 + AT_rich Low_complexity Low_complexity 1 22 0 353 313 56 14 chr3 110252492 110252636 -117271942 - MIR SINE MIR -11 251 102 6162 98 21 6 chr3 110253441 110254335 -117270243 - L1PA13 LINE L1 -2 6161 5254 3724 175 67 31 chr3 110254341 110255005 -117269573 + L1P LINE L1 4360 5064 -1082 1944 127 7 3 chr3 110255005 110255297 -117269281 + AluSc SINE Alu 1 293 -16 3724 175 67 31 chr3 110255297 110255502 -117269076 + L1P LINE L1 5064 5260 -886 183 162 0 0 chr3 110255576 110255613 -117268965 + CT-rich Low_complexity Low_complexity 2 38 0 424 329 174 5 chr3 110255673 110255880 -117268698 - MIR SINE MIR -19 243 2 195 369 71 0 chr3 110256142 110256226 -117268352 + L2 LINE L2 3195 3284 -29 2133 109 0 3 chr3 110257497 110257791 -117266787 + AluY SINE Alu 1 293 -18 218 277 71 124 chr3 110258791 110259031 -117265547 - L2 LINE L2 -3 3269 2977 1116 234 130 3 chr3 110259031 110259377 -117265201 + MLT1B LTR MaLR 1 390 0 218 277 71 124 chr3 110259377 110259540 -117265038 - L2 LINE L2 -295 2977 2807 801 74 116 0 chr3 110259927 110260048 -117264530 + MER85 DNA T2_type 1 135 -4 614 317 9 13 chr3 110260739 110260969 -117263609 - MLT1H LTR MaLR -298 251 23 221 206 59 0 chr3 110261049 110261117 -117263461 + (TA)n Simple_repeat Simple_repeat 2 73 0 772 292 33 33 chr3 110261243 110261572 -117263006 + L1MEc LINE L1 168 496 -5900 7899 52 21 2 chr3 110261634 110262622 -117261956 + LTR13 LTR ERVK 1 1007 0 3385 117 20 0 chr3 110262680 110263225 -117261353 + L1M1 LINE L1 2234 2789 -4776 2948 221 19 11 chr3 110263222 110263842 -117260736 - L1M1 LINE L1 -6930 635 11 * 1142 268 38 44 chr3 110263844 110264318 -117260260 + L1ME1 LINE L1 5691 6161 -5 22 103 0 0 chr3 110264370 110264448 -117260130 + AT_rich Low_complexity Low_complexity 1 78 0 639 166 11 28 chr3 110266404 110266585 -117257993 + GA-rich Low_complexity Low_complexity 3 180 0 248 203 34 0 chr3 110266673 110266732 -117257846 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 23 33 0 0 chr3 110266814 110266844 -117257734 + AT_rich Low_complexity Low_complexity 1 30 0 29 0 0 0 chr3 110267537 110267566 -117257012 + AT_rich Low_complexity Low_complexity 1 29 0 1496 175 39 26 chr3 110267641 110268110 -117256468 + L1PA16 LINE L1 5017 5489 -677 712 165 8 16 chr3 110268122 110268249 -117256329 + AluJ SINE Alu 7 132 -180 337 232 36 62 chr3 110268252 110268364 -117256214 - L1MC4 LINE L1 -1339 6703 6595 832 185 6 43 chr3 110268387 110268549 -117256029 + AluJ SINE Alu 132 287 -25 3655 162 20 19 chr3 110268549 110269236 -117255342 + L1PA16 LINE L1 5476 6163 -3 871 294 36 38 chr3 110269423 110269844 -117254734 + LTR38 LTR ERV1 137 556 0 902 151 20 0 chr3 110270055 110270224 -117254354 + AluSg/x SINE Alu 135 306 0 881 261 42 0 chr3 110270407 110270622 -117253956 - MER58A DNA MER1_type 0 224 1 25761 143 15 16 chr3 110270827 110277227 -117247351 + L1PA8A LINE L1 3 6445 -1 2133 109 0 0 chr3 110277493 110277778 -117246800 + AluSq SINE Alu 21 305 -8 27 29 0 0 chr3 110278530 110278564 -117246014 + AT_rich Low_complexity Low_complexity 1 34 0 29 28 0 0 chr3 110278698 110278734 -117245844 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr3 110279848 110279868 -117244710 + (TA)n Simple_repeat Simple_repeat 2 21 0 248 329 63 25 chr3 110280315 110280473 -117244105 + MLT1J2 LTR MaLR 266 429 -21 369 265 8 23 chr3 110280495 110280610 -117243968 + (TA)n Simple_repeat Simple_repeat 2 116 -15 279 0 0 0 chr3 110280610 110280641 -117243937 + (TG)n Simple_repeat Simple_repeat 2 32 0 369 265 8 23 chr3 110280641 110280657 -117243921 + (TA)n Simple_repeat Simple_repeat 116 131 0 284 340 41 0 chr3 110281475 110281572 -117243006 + MLT1J2 LTR MaLR 244 344 -106 246 105 0 0 chr3 110282125 110282163 -117242415 + (TC)n Simple_repeat Simple_repeat 1 38 0 335 361 119 10 chr3 110282184 110282535 -117242043 + L1M4c LINE L1 1390 1882 -4500 12358 148 47 29 chr3 110282964 110285341 -117239237 + Tigger1 DNA MER2_type 1 2418 0 363 23 0 0 chr3 110286087 110286143 -117238435 + (TC)n Simple_repeat Simple_repeat 1 100 0 363 23 0 0 chr3 110286143 110286187 -117238391 + (TC)n Simple_repeat Simple_repeat 2 45 0 240 35 0 0 chr3 110286203 110286232 -117238346 + (CA)n Simple_repeat Simple_repeat 2 30 0 635 124 0 0 chr3 110287381 110287478 -117237100 + AluY SINE Alu 1 97 -214 937 121 0 14 chr3 110287478 110287618 -117236960 + AluSc SINE Alu 160 297 -12 336 349 54 13 chr3 110287664 110287813 -117236765 + MIR3 SINE MIR 47 201 -7 297 289 151 7 chr3 110288400 110288552 -117236026 + MLT1H LTR MaLR 338 493 -56 385 260 175 25 chr3 110289479 110289679 -117234899 + MLT1H1 LTR MaLR 326 555 0 185 328 45 0 chr3 110289681 110289748 -117234830 + L2 LINE L2 3227 3296 -17 888 199 0 0 chr3 110289760 110289916 -117234662 + FRAM SINE Alu 1 156 -20 249 77 0 51 chr3 110290871 110290910 -117233668 + L1MA2 LINE L1 6213 6249 -55 1741 140 184 11 chr3 110291014 110291379 -117233199 + MSTA LTR MaLR 1 428 0 700 159 8 0 chr3 110292735 110292861 -117231717 + L1MA5A LINE L1 6168 6294 -3 616 249 139 29 chr3 110293747 110293956 -117230622 + MIR SINE MIR 15 246 -16 750 289 183 17 chr3 110294127 110294607 -117229971 - L2 LINE L2 -6 3307 2736 21 36 0 0 chr3 110295590 110295618 -117228960 + AT_rich Low_complexity Low_complexity 1 28 0 18483 84 2 0 chr3 110295715 110298204 -117226374 + L1P LINE L1 1 2495 -3651 15337 34 3 0 chr3 110348208 110350164 -117174414 + L1P LINE L1 3056 5017 -1129 708 281 1 70 chr3 110350275 110350388 -117174190 - L1ME LINE L1 -461 5709 5590 1864 135 14 24 chr3 110350388 110350676 -117173902 - AluSx SINE Alu -27 285 1 708 281 1 70 chr3 110350676 110350866 -117173712 - L1ME LINE L1 -580 5590 5426 873 291 76 36 chr3 110351038 110351791 -117172787 - L1M2 LINE L1 -748 5398 4640 1918 169 23 6 chr3 110351796 110352145 -117172433 + THE1A LTR MaLR 1 355 0 6252 98 13 1 chr3 110352145 110352996 -117171582 + THE1A-int LTR MaLR 1 861 -719 2832 197 32 19 chr3 110352996 110354604 -117169974 + L1PB1 LINE L1 115 1995 -4868 1118 138 181 0 chr3 110354612 110354872 -117169706 + L1PB1 LINE L1 2625 2931 -3932 11642 201 25 24 chr3 110354973 110357220 -117167358 + L1PB1 LINE L1 3340 5583 -1284 1811 128 0 25 chr3 110357220 110357501 -117167077 + AluSx SINE Alu 21 294 -18 11642 201 25 24 chr3 110357501 110358413 -117166165 + L1PB1 LINE L1 5583 6498 -369 390 21 0 0 chr3 110358413 110358460 -117166118 + (CA)n Simple_repeat Simple_repeat 2 48 0 11642 201 25 24 chr3 110358460 110358830 -117165748 + L1PB1 LINE L1 6498 6866 -1 5103 87 25 54 chr3 110358838 110359594 -117164984 + THE1A-int LTR MaLR 847 1580 0 1887 171 17 6 chr3 110359594 110359945 -117164633 + THE1A LTR MaLR 1 355 0 3110 185 47 11 chr3 110359991 110360651 -117163927 + L1MB5 LINE L1 5485 6168 -6 320 204 53 45 chr3 110360737 110360869 -117163709 - L1M4 LINE L1 -1606 4540 4408 1062 103 17 6 chr3 110360891 110361065 -117163513 - L1MA6 LINE L1 0 6300 6125 1082 130 0 12 chr3 110361071 110361240 -117163338 - L1PB3 LINE L1 -1 6153 5987 1456 211 20 6 chr3 110361240 110361595 -117162983 + L1 LINE L1 4215 4574 -1572 966 183 68 5 chr3 110361594 110361813 -117162765 - L1MA6 LINE L1 -163 6137 5905 * 333 210 80 0 chr3 110361821 110361921 -117162657 - L1M4 LINE L1 -1742 4404 4297 180 316 11 42 chr3 110362222 110362317 -117162261 - L2 LINE L2 0 3313 3222 294 194 0 0 chr3 110362800 110362872 -117161706 + CT-rich Low_complexity Low_complexity 2 73 0 188 132 0 26 chr3 110363252 110363290 -117161288 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 218 333 79 79 chr3 110363671 110364457 -117160121 - L2 LINE L2 -8 3264 2476 25 31 0 0 chr3 110364466 110364498 -117160080 + AT_rich Low_complexity Low_complexity 1 32 0 516 98 0 37 chr3 110364523 110364605 -117159973 + FLAM SINE Alu 55 133 -10 35 24 0 0 chr3 110364687 110364729 -117159849 + AT_rich Low_complexity Low_complexity 1 42 0 206 28 0 83 chr3 110364875 110364911 -117159667 + (TAAAAA)n Simple_repeat Simple_repeat 2 34 0 207 69 0 0 chr3 110364973 110365002 -117159576 + (TG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr3 110365367 110365388 -117159190 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 110365597 110365618 -117158960 + AT_rich Low_complexity Low_complexity 1 21 0 218 337 114 21 chr3 110366665 110366858 -117157720 + MIR SINE MIR 5 215 -47 718 156 118 70 chr3 110367304 110367458 -117157120 + L1MCa LINE L1 32 198 -6228 1759 124 16 0 chr3 110367458 110367708 -117156870 - AluSx SINE Alu -15 297 44 718 156 118 70 chr3 110367708 110367739 -117156839 + L1MCa LINE L1 198 226 -6200 765 179 13 0 chr3 110367745 110367901 -117156677 + L1MCa LINE L1 1247 1404 -5022 288 53 0 0 chr3 110368085 110368123 -117156455 + (TG)n Simple_repeat Simple_repeat 2 39 0 22 35 0 0 chr3 110368179 110368208 -117156370 + AT_rich Low_complexity Low_complexity 1 29 0 16250 133 35 64 chr3 110369229 110372307 -117152271 - Tigger3(Golem) DNA MER2_type -2 3027 40 342 45 0 0 chr3 110372332 110372376 -117152202 + (CA)n Simple_repeat Simple_repeat 1 44 0 1966 150 3 7 chr3 110372809 110373115 -117151463 + AluSx SINE Alu 1 305 -7 876 205 99 38 chr3 110373512 110373595 -117150983 - L1ME3A LINE L1 -52 6118 6041 1960 113 14 0 chr3 110373595 110373870 -117150708 - AluSq SINE Alu -2 311 33 876 205 99 38 chr3 110373870 110374049 -117150529 - L1ME3A LINE L1 -129 6041 5840 741 342 38 25 chr3 110374335 110374654 -117149924 - L2 LINE L2 -639 2675 2353 1940 80 0 4 chr3 110374654 110374904 -117149674 - AluSc SINE Alu -2 307 59 180 200 108 31 chr3 110374908 110374973 -117149605 - MIR SINE MIR -72 190 121 475 101 0 0 chr3 110374976 110375045 -117149533 - AluSc SINE Alu -249 69 1 735 327 209 10 chr3 110375046 110375643 -117148935 - L2 LINE L2 -952 2362 1647 515 97 0 0 chr3 110375817 110375889 -117148689 - AluJb SINE Alu -83 229 158 1122 113 21 0 chr3 110376194 110376380 -117148198 - L1MA6 LINE L1 -1 6299 6110 1790 130 82 0 chr3 110376388 110376704 -117147874 + L1MA6 LINE L1 5756 6097 -203 23964 50 3 7 chr3 110376863 110379897 -117144681 + L1PA4 LINE L1 7 3030 -3116 4292 60 4 0 chr3 110380000 110380555 -117144023 + L1PA4 LINE L1 5596 6152 -3 297 121 72 0 chr3 110381404 110381487 -117143091 + (TA)n Simple_repeat Simple_repeat 2 90 0 22 0 0 0 chr3 110381509 110381531 -117143047 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr3 110381599 110381638 -117142940 + AT_rich Low_complexity Low_complexity 1 39 0 24 100 0 0 chr3 110382451 110382531 -117142047 + AT_rich Low_complexity Low_complexity 1 80 0 21 0 0 0 chr3 110383411 110383432 -117141146 + AT_rich Low_complexity Low_complexity 1 21 0 1182 253 60 26 chr3 110383845 110384228 -117140350 + LTR38 LTR ERV1 1 396 -160 32 57 0 0 chr3 110384313 110384366 -117140212 + AT_rich Low_complexity Low_complexity 1 53 0 231 247 35 35 chr3 110384482 110384567 -117140011 + LTR38 LTR ERV1 472 556 0 21 36 0 0 chr3 110384774 110384802 -117139776 + AT_rich Low_complexity Low_complexity 1 28 0 8520 224 30 56 chr3 110384854 110386145 -117138433 + L1PA11 LINE L1 1 1324 -6260 2195 135 0 0 chr3 110386145 110386457 -117138121 - AluSx SINE Alu 0 312 1 8520 224 30 56 chr3 110386457 110388977 -117135601 + L1PA11 LINE L1 1324 4524 -3060 1637 197 29 29 chr3 110388978 110389353 -117135225 + THE1C LTR MaLR 1 375 0 8350 142 112 4 chr3 110389355 110390775 -117133803 + THE1C-int LTR MaLR 3 1575 -5 1727 167 67 25 chr3 110390788 110391148 -117133430 + THE1C LTR MaLR 1 375 0 11205 161 37 5 chr3 110391153 110391261 -117133317 + L1PA11 LINE L1 4526 4629 -2983 2174 137 0 0 chr3 110391261 110391561 -117133017 + AluSq SINE Alu 1 300 -13 11205 161 37 5 chr3 110391561 110394523 -117130055 + L1PA11 LINE L1 4629 7611 -1 320 289 109 26 chr3 110394576 110394732 -117129846 - L1MC5 LINE L1 -182 7779 7611 358 291 22 45 chr3 110394820 110395043 -117129535 - L1MC5 LINE L1 -727 7234 7017 201 74 0 0 chr3 110395105 110395132 -117129446 + (TC)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr3 110395150 110395171 -117129407 + AT_rich Low_complexity Low_complexity 1 21 0 1942 133 39 0 chr3 110395299 110395585 -117128993 + AluSx SINE Alu 1 297 -15 29 84 0 0 chr3 110395800 110395871 -117128707 + AT_rich Low_complexity Low_complexity 1 71 0 21 82 0 0 chr3 110397195 110397244 -117127334 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr3 110398538 110398559 -117126019 + AT_rich Low_complexity Low_complexity 1 21 0 1040 227 24 29 chr3 110399163 110399679 -117124899 - L1PBb LINE L1 -4917 1286 686 2071 145 7 0 chr3 110399724 110400028 -117124550 - AluSx SINE Alu -6 306 1 479 128 13 0 chr3 110400606 110400684 -117123894 + MADE1 DNA Mariner 1 79 -1 460 267 38 8 chr3 110401286 110401417 -117123161 + MIR SINE MIR 124 258 -4 303 313 83 31 chr3 110401478 110401670 -117122908 + MIR SINE MIR 5 206 -56 29 0 0 0 chr3 110402122 110402151 -117122427 + AT_rich Low_complexity Low_complexity 1 29 0 223 208 21 0 chr3 110403261 110403309 -117121269 + L2 LINE L2 3261 3309 -4 1478 183 84 15 chr3 110403786 110403944 -117120634 - AluJb SINE Alu -19 293 147 509 0 16 0 chr3 110403944 110404005 -117120573 + (TG)n Simple_repeat Simple_repeat 2 63 0 1478 183 84 15 chr3 110404005 110404120 -117120458 - AluJb SINE Alu -165 147 1 1492 210 0 15 chr3 110404275 110404547 -117120031 + AluJo SINE Alu 1 268 -44 23 33 0 0 chr3 110404962 110404992 -117119586 + AT_rich Low_complexity Low_complexity 1 30 0 209 289 258 10 chr3 110405884 110405981 -117118597 - L2 LINE L2 -16 3256 3136 538 323 127 16 chr3 110406179 110406573 -117118005 - L2 LINE L2 -406 2908 2424 228 388 19 10 chr3 110406603 110406706 -117117872 + L3 LINE CR1 609 712 -865 295 308 75 9 chr3 110406707 110406814 -117117764 + L3 LINE CR1 1349 1462 -115 330 334 55 8 chr3 110406847 110406992 -117117586 - MIR3 SINE MIR -33 175 22 1079 151 14 112 chr3 110408536 110408814 -117115764 + MER7A DNA MER2_type 1 249 -97 21 36 0 0 chr3 110409218 110409246 -117115332 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr3 110409542 110409575 -117115003 + AT_rich Low_complexity Low_complexity 1 33 0 7450 31 5 0 chr3 110412208 110413162 -117111416 - L1PA4 LINE L1 0 6155 5200 25 31 0 0 chr3 110413182 110413214 -117111364 + AT_rich Low_complexity Low_complexity 1 32 0 936 304 72 40 chr3 110413514 110413987 -117110591 + L2 LINE L2 2826 3313 0 397 292 86 29 chr3 110414374 110414583 -117109995 + LTR33A LTR ERVL 303 523 0 22 35 0 0 chr3 110417348 110417377 -117107201 + AT_rich Low_complexity Low_complexity 1 29 0 1382 252 35 54 chr3 110417414 110417770 -117106808 + MLT1C LTR MaLR 51 399 -68 2537 42 3 0 chr3 110417770 110418080 -117106498 - AluY SINE Alu 0 311 1 1382 252 35 54 chr3 110418080 110418148 -117106430 + MLT1C LTR MaLR 399 467 0 25 90 0 0 chr3 110418771 110418838 -117105740 + AT_rich Low_complexity Low_complexity 1 67 0 1185 163 10 34 chr3 110419474 110419747 -117104831 + L1MCa LINE L1 1554 1893 -4533 22 0 0 0 chr3 110420534 110420556 -117104022 + AT_rich Low_complexity Low_complexity 1 22 0 369 301 9 0 chr3 110420751 110420864 -117103714 - MIR SINE MIR -2 260 147 21 0 0 0 chr3 110421434 110421455 -117103123 + AT_rich Low_complexity Low_complexity 1 21 0 2111 217 28 46 chr3 110421519 110421980 -117102598 + MLT2B2 LTR ERVL 1 453 -62 199 281 37 37 chr3 110422683 110422765 -117101813 + L2 LINE L2 2927 3008 -264 21 82 0 0 chr3 110423853 110423902 -117100676 + AT_rich Low_complexity Low_complexity 1 49 0 252 164 0 0 chr3 110423934 110424001 -117100577 + (CA)n Simple_repeat Simple_repeat 2 68 0 24 0 0 0 chr3 110424655 110424679 -117099899 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr3 110425373 110425409 -117099169 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr3 110425469 110425500 -117099078 + AT_rich Low_complexity Low_complexity 1 31 0 1889 153 6 13 chr3 110426436 110426750 -117097828 - AluJo SINE Alu 0 312 1 756 241 53 23 chr3 110427013 110427316 -117097262 - L1MC5 LINE L1 -35 7926 7615 2132 265 70 16 chr3 110427465 110428214 -117096364 - L1ME1 LINE L1 -33 6133 5350 25 90 0 0 chr3 110428670 110428737 -117095841 + AT_rich Low_complexity Low_complexity 1 67 0 194 318 15 45 chr3 110432026 110432092 -117092486 - L2 LINE L2 -9 3263 3200 1301 163 0 44 chr3 110432538 110432765 -117091813 + AluJo SINE Alu 82 298 -14 1590 131 3 86 chr3 110435892 110436206 -117088372 - AluJb SINE Alu -14 298 11 288 357 168 18 chr3 110436422 110436755 -117087823 + L2 LINE L2 2124 2506 -808 1536 218 48 75 chr3 110436768 110437287 -117087291 + MLT1D LTR MaLR 1 505 0 191 349 39 31 chr3 110437567 110437696 -117086882 - MIR SINE MIR -56 206 77 1314 252 28 33 chr3 110437784 110438212 -117086366 + MER74B LTR ERVL 123 548 -74 37 52 0 0 chr3 110438585 110438643 -117085935 + AT_rich Low_complexity Low_complexity 1 58 0 267 171 37 55 chr3 110438875 110439039 -117085539 + (TATAA)n Simple_repeat Simple_repeat 1 161 0 421 144 46 52 chr3 110439063 110439236 -117085342 + (TTATA)n Simple_repeat Simple_repeat 5 176 0 22 0 0 0 chr3 110439248 110439270 -117085308 + AT_rich Low_complexity Low_complexity 1 22 0 2134 113 3 13 chr3 110439274 110439583 -117084995 - AluSx SINE Alu -5 307 2 22 56 0 0 chr3 110439620 110439656 -117084922 + AT_rich Low_complexity Low_complexity 1 36 0 417 20 0 0 chr3 110440661 110440711 -117083867 + (TG)n Simple_repeat Simple_repeat 2 51 0 183 324 44 0 chr3 110442245 110442313 -117082265 - MIR SINE MIR -111 151 81 188 231 0 0 chr3 110442393 110442432 -117082146 + L2 LINE L2 3192 3230 -83 378 42 0 0 chr3 110442840 110442888 -117081690 + (TG)n Simple_repeat Simple_repeat 1 48 0 416 307 34 28 chr3 110443236 110443412 -117081166 - L2 LINE L2 -1276 2038 1862 252 0 0 0 chr3 110444707 110444735 -117079843 + (TG)n Simple_repeat Simple_repeat 1 28 0 207 0 0 0 chr3 110445418 110445441 -117079137 + (CA)n Simple_repeat Simple_repeat 2 24 0 254 236 35 21 chr3 110445741 110445885 -117078693 + (TATAA)n Simple_repeat Simple_repeat 2 147 0 234 0 0 0 chr3 110445916 110445942 -117078636 + (TG)n Simple_repeat Simple_repeat 2 27 0 525 215 66 8 chr3 110446683 110446804 -117077774 + LTR50 LTR ERVL 7 134 -661 315 311 94 37 chr3 110446863 110447823 -117076755 + L1M4 LINE L1 4516 5534 -640 3075 96 12 0 chr3 110447823 110448252 -117076326 + MER57B LTR ERV1 1 434 0 315 311 94 37 chr3 110448252 110448304 -117076274 + L1M4 LINE L1 5534 5582 -592 314 281 37 22 chr3 110449159 110449257 -117075321 - L2 LINE L2 -54 3259 3136 22 0 0 0 chr3 110449257 110449279 -117075299 + AT_rich Low_complexity Low_complexity 1 22 0 314 281 37 22 chr3 110449279 110449294 -117075284 - L2 LINE L2 -177 3136 3123 1732 107 0 4 chr3 110449334 110449567 -117075011 + AluSc SINE Alu 66 297 -12 27 87 0 0 chr3 110450071 110450140 -117074438 + AT_rich Low_complexity Low_complexity 1 69 0 718 174 0 8 chr3 110451297 110451429 -117073149 - AluSx SINE Alu -10 300 170 698 162 0 0 chr3 110451424 110451535 -117073043 - AluSx SINE Alu -202 111 1 * 211 373 118 51 chr3 110451909 110452282 -117072296 + L2 LINE L2 2841 3238 -34 * 223 306 0 16 chr3 110452259 110452321 -117072257 - L2 LINE L2 -669 2645 2585 273 352 21 7 chr3 110452513 110452655 -117071923 - MIR SINE MIR -114 148 5 219 187 27 27 chr3 110452793 110452868 -117071710 + T-rich Low_complexity Low_complexity 3 77 0 579 311 20 39 chr3 110453821 110454075 -117070503 - MIR SINE MIR -5 257 9 1805 141 7 11 chr3 110455111 110455380 -117069198 - AluSx SINE Alu -22 290 23 21 0 0 0 chr3 110456571 110456592 -117067986 + AT_rich Low_complexity Low_complexity 1 21 0 296 381 0 22 chr3 110457262 110457401 -117067177 + MER5A DNA MER1_type 5 140 -49 288 265 270 0 chr3 110457512 110457712 -117066866 + MER112 DNA MER1_type 1 254 -6 25 31 0 0 chr3 110458792 110458824 -117065754 + AT_rich Low_complexity Low_complexity 1 32 0 665 290 117 24 chr3 110461995 110462329 -117062249 - MLT1I LTR MaLR -13 396 32 472 184 10 10 chr3 110462341 110462439 -117062139 + MER4A LTR ERV1 1 98 -566 1449 132 50 83 chr3 110462439 110462796 -117061782 + MER4A LTR ERV1 261 664 0 319 341 75 12 chr3 110463524 110463697 -117060881 + MLT1I LTR MaLR 7 190 -219 278 340 45 26 chr3 110463700 110463856 -117060722 + L2 LINE L2 2543 2701 -613 28 29 0 0 chr3 110464118 110464153 -117060425 + AT_rich Low_complexity Low_complexity 1 35 0 2013 138 6 54 chr3 110464241 110464595 -117059983 - MER1B DNA MER1_type 0 337 1 4679 109 1 24 chr3 110464909 110465627 -117058951 + L1PA11 LINE L1 5465 6166 -8 187 306 12 35 chr3 110466099 110466184 -117058394 + L2 LINE L2 3008 3090 -223 518 244 0 15 chr3 110466492 110466627 -117057951 + MIR SINE MIR 77 209 -53 315 289 103 26 chr3 110466983 110467139 -117057439 - MIR SINE MIR -11 251 84 299 274 0 27 chr3 110467768 110467841 -117056737 + MER5B DNA MER1_type 103 173 -5 277 378 17 0 chr3 110468015 110468134 -117056444 + L2 LINE L2 2933 3053 -219 378 285 127 10 chr3 110468358 110468558 -117056020 + MIR SINE MIR 38 260 -2 27 0 0 0 chr3 110469552 110469579 -117054999 + AT_rich Low_complexity Low_complexity 1 27 0 643 176 16 0 chr3 110469613 110469738 -117054840 + L1MA3 LINE L1 6059 6185 -120 225 348 0 0 chr3 110469919 110469988 -117054590 + MIR SINE MIR 1 69 -193 2562 193 7 4 chr3 110469991 110470452 -117054126 - MLT1C LTR MaLR -3 464 3 471 272 74 19 chr3 110470473 110470635 -117053943 + MIR SINE MIR 86 256 -6 352 250 42 0 chr3 110471682 110471778 -117052800 + LTR67 LTR ERVL 458 557 0 443 125 0 0 chr3 110471852 110471924 -117052654 + L1PA7 LINE L1 6083 6154 0 42 36 0 0 chr3 110472625 110472681 -117051897 + AT_rich Low_complexity Low_complexity 1 56 0 1882 141 3 30 chr3 110473477 110473782 -117050796 - AluJb SINE Alu -12 300 4 721 302 27 42 chr3 110474474 110474838 -117049740 + LTR16C LTR ERVL 93 491 0 606 367 65 44 chr3 110474879 110475818 -117048760 + HERV16 LTR ERVL 56 1014 -3982 272 352 5 52 chr3 110476157 110476350 -117048228 + HERV16 LTR ERVL 1492 1675 -4089 282 259 0 0 chr3 110476512 110476570 -117048008 + LTR16C LTR ERVL 214 271 -220 3493 188 24 34 chr3 110476928 110478083 -117046495 + L1MB7 LINE L1 4922 6067 -117 656 271 14 29 chr3 110478134 110478341 -117046237 - MIR SINE MIR -5 257 54 1479 131 5 0 chr3 110478342 110478564 -117046014 - AluSq SINE Alu -8 305 83 440 147 32 21 chr3 110478762 110478857 -117045721 + L1M4 LINE L1 5729 5824 -354 2148 108 3 3 chr3 110479605 110479902 -117044676 - AluSg SINE Alu -13 297 1 23 0 0 0 chr3 110479969 110479992 -117044586 + AT_rich Low_complexity Low_complexity 1 23 0 1015 130 0 0 chr3 110481726 110481880 -117042698 + AluYb8 SINE Alu 165 318 0 1014 318 68 20 chr3 110481986 110482481 -117042097 - L2 LINE L2 -172 3141 2597 1783 169 0 3 chr3 110482481 110482777 -117041801 + AluJo SINE Alu 1 295 -17 1014 318 68 20 chr3 110482777 110482924 -117041654 - L2 LINE L2 -716 2597 2459 182 274 39 0 chr3 110483499 110483550 -117041028 + L3 LINE CR1 861 913 -664 1615 120 0 25 chr3 110483624 110483898 -117040680 - L1PA13 LINE L1 -5 6158 5892 493 151 0 0 chr3 110483898 110483984 -117040594 + L1P LINE L1 5174 5259 -887 1141 210 186 18 chr3 110484006 110484392 -117040186 - MSTB2 LTR MaLR -6 451 1 191 306 75 41 chr3 110486742 110486889 -117037689 - L2 LINE L2 -1012 2302 2151 531 279 7 19 chr3 110487155 110487309 -117037269 - MIR SINE MIR -70 192 41 367 85 34 17 chr3 110488592 110488651 -117035927 + L1MC1 LINE L1 5780 5839 -494 * 3606 51 0 0 chr3 110488636 110489088 -117035490 - L1PA5 LINE L1 -1386 4760 4309 7274 46 0 7 chr3 110489088 110490480 -117034098 + L1PA5 LINE L1 4768 6153 -1 1184 180 13 0 chr3 110490480 110490719 -117033859 + L1MC1 LINE L1 5819 6060 -273 473 237 0 17 chr3 110490820 110490938 -117033640 - L1MA7 LINE L1 -190 6101 5986 27 49 0 0 chr3 110491032 110491073 -117033505 + AT_rich Low_complexity Low_complexity 1 41 0 360 0 0 0 chr3 110491712 110491752 -117032826 + (TG)n Simple_repeat Simple_repeat 1 40 0 516 234 45 52 chr3 110492245 110492399 -117032179 + MIR SINE MIR 12 164 -98 337 307 31 25 chr3 110493960 110494123 -117030455 - L1ME LINE L1 -357 5764 5601 25 31 0 0 chr3 110495792 110495824 -117028754 + AT_rich Low_complexity Low_complexity 1 32 0 1448 171 16 38 chr3 110548377 110548515 -116976063 + AluJo SINE Alu 1 141 -171 1646 183 3 7 chr3 110548515 110548815 -116975763 + AluJb SINE Alu 1 299 -13 1448 171 16 38 chr3 110548815 110548991 -116975587 + AluJo SINE Alu 141 308 -4 1591 114 9 0 chr3 110549268 110549495 -116975083 - AluSq SINE Alu -18 295 67 224 219 0 9 chr3 110549595 110549651 -116974927 + CT-rich Low_complexity Low_complexity 1 56 -57 2190 103 0 0 chr3 110549651 110549946 -116974632 - AluSq SINE Alu -16 297 14 224 219 0 9 chr3 110549946 110549992 -116974586 + CT-rich Low_complexity Low_complexity 56 113 0 385 231 14 0 chr3 110550028 110550175 -116974403 + CT-rich Low_complexity Low_complexity 2 150 0 282 56 0 0 chr3 110550175 110550211 -116974367 + (CA)n Simple_repeat Simple_repeat 1 36 0 558 122 0 0 chr3 110551954 110552036 -116972542 - AluY SINE Alu -228 82 1 826 122 0 0 chr3 110552316 110552439 -116972139 - AluSp/q SINE Alu -1 312 190 390 239 0 28 chr3 110552439 110552564 -116972014 + MLT1C LTR MaLR 260 457 -10 969 85 0 0 chr3 110552586 110552715 -116971863 - L1PA8 LINE L1 -10 6162 6034 878 97 0 0 chr3 110552715 110552828 -116971750 - AluSg SINE Alu -197 113 1 264 189 14 27 chr3 110552892 110552966 -116971612 + MLT1C LTR MaLR 42 114 -353 5062 25 0 0 chr3 110554669 110555257 -116969321 - L1PA4 LINE L1 -3 6152 5565 1077 203 58 21 chr3 110555257 110555548 -116969030 - MLT1A1 LTR MaLR -54 311 10 540 231 87 63 chr3 110556102 110556388 -116968190 + MLT1C LTR MaLR 53 345 -122 853 254 136 19 chr3 110556400 110556833 -116967745 + MLT1D LTR MaLR 3 486 -19 1707 211 42 2 chr3 110557760 110558167 -116966411 + L1MA8 LINE L1 5620 6042 -249 669 212 0 0 chr3 110558167 110558299 -116966279 + FLAM_C SINE Alu 1 132 -1 1521 189 7 0 chr3 110558319 110558594 -116965984 + AluJo SINE Alu 11 287 -25 736 83 15 75 chr3 110560165 110560298 -116964280 + THE1B LTR MaLR 171 295 -69 2271 91 0 3 chr3 110560654 110560951 -116963627 - AluSc SINE Alu -13 296 1 744 143 0 24 chr3 110562264 110562390 -116962188 + FRAM SINE Alu 42 164 -12 269 287 49 16 chr3 110562393 110562515 -116962063 + L1MD2 LINE L1 5600 5725 -2083 1139 211 42 131 chr3 110562565 110563166 -116961412 + L1MD2 LINE L1 5813 6359 0 528 204 0 0 chr3 110563180 110563273 -116961305 + AluJ/FLAM SINE Alu 1 93 -219 400 211 49 24 chr3 110563739 110563862 -116960716 + L1M1 LINE L1 22 147 -7418 * 961 181 10 5 chr3 110563848 110564052 -116960526 + L1M1 LINE L1 1105 1309 -6256 2623 153 69 35 chr3 110564055 110564619 -116959959 - LTR1 LTR ERV1 0 785 203 311 240 21 21 chr3 110564619 110564750 -116959828 - LTR1 LTR ERV1 -539 246 16 1587 158 26 4 chr3 110564766 110565039 -116959539 - HUERS-P2 LTR ERV1 -1 3087 2809 207 0 0 0 chr3 110565039 110565062 -116959516 + (A)n Simple_repeat Simple_repeat 1 23 0 1510 165 4 0 chr3 110565063 110565336 -116959242 + AluY SINE Alu 3 276 -35 5892 121 11 4 chr3 110565561 110566837 -116957741 + L1PA11 LINE L1 4893 6174 0 873 272 20 36 chr3 110567197 110567498 -116957080 + MLT1G3 LTR MaLR 7 302 -228 31 0 0 0 chr3 110567926 110567957 -116956621 + AT_rich Low_complexity Low_complexity 1 31 0 4494 238 41 10 chr3 110568130 110570024 -116954554 - L1 LINE L1 -2660 4905 2954 476 124 101 0 chr3 110570025 110570114 -116954464 + MER4A LTR ERV1 1 98 -566 1589 147 3 70 chr3 110570114 110570483 -116954095 + MER4A LTR ERV1 261 664 0 1692 280 33 14 chr3 110570516 110571453 -116953125 - L1M2 LINE L1 -4314 2037 1094 814 120 15 8 chr3 110571734 110571867 -116952711 + THE1C LTR MaLR 242 375 0 323 349 74 26 chr3 110572249 110572438 -116952140 + MIR3 SINE MIR 2 199 -9 28 48 0 0 chr3 110572799 110572841 -116951737 + AT_rich Low_complexity Low_complexity 1 42 0 259 283 57 28 chr3 110572851 110572957 -116951621 + L2 LINE L2 3200 3308 -5 1448 214 0 14 chr3 110572968 110573263 -116951315 + AluJo SINE Alu 6 296 -16 11879 214 63 8 chr3 110573768 110576597 -116947981 + L1MA4A LINE L1 2 3057 -3791 188 33 0 33 chr3 110576597 110576627 -116947951 + (CAAAA)n Simple_repeat Simple_repeat 3 31 0 11879 214 63 8 chr3 110576627 110577261 -116947317 + L1MA4A LINE L1 3057 3655 -3193 239 229 0 14 chr3 110577363 110577433 -116947145 + L1MA4A LINE L1 4000 4068 -2780 2547 192 266 61 chr3 110577454 110578610 -116945968 + L1MA4A LINE L1 4006 5398 -1450 5138 156 16 22 chr3 110578710 110579841 -116944737 + L1MA4A LINE L1 5876 7005 0 352 333 36 36 chr3 110582049 110582160 -116942418 + MER91A DNA MER1_type 12 122 -74 269 254 104 0 chr3 110582215 110582282 -116942296 + MER91A DNA MER1_type 123 196 0 189 0 0 0 chr3 110582863 110582884 -116941694 + (TC)n Simple_repeat Simple_repeat 2 22 0 1332 219 10 39 chr3 110582904 110583210 -116941368 - AluJb SINE Alu -15 297 1 303 296 42 35 chr3 110583336 110583478 -116941100 - L1MC/D LINE L1 -558 5801 5659 4331 149 59 11 chr3 110583551 110584436 -116940142 + L1MA4 LINE L1 5370 6296 -4 442 203 32 8 chr3 110584439 110584562 -116940016 + L1MB8 LINE L1 6044 6169 -9 28 48 0 0 chr3 110584563 110584605 -116939973 + AT_rich Low_complexity Low_complexity 1 42 0 2218 117 0 0 chr3 110584726 110585026 -116939552 + AluSx SINE Alu 1 300 -12 448 322 51 66 chr3 110585267 110585599 -116938979 + HAL1 LINE L1 2165 2491 -16 708 251 18 22 chr3 110585756 110585983 -116938595 - L1MC/D LINE L1 -784 5362 5137 279 210 90 10 chr3 110586102 110586202 -116938376 - L1M4b LINE L1 -1294 5663 5556 2276 196 8 16 chr3 110586217 110586693 -116937885 - L1M4b LINE L1 -1774 5183 4708 1932 120 29 4 chr3 110586693 110586989 -116937589 - AluSg SINE Alu 0 303 1 2276 196 8 16 chr3 110586989 110587016 -116937562 - L1M4b LINE L1 -2249 4708 4682 1876 181 28 14 chr3 110587016 110587370 -116937208 - THE1B LTR MaLR 0 364 6 2687 81 0 3 chr3 110587374 110587744 -116936834 - THE1B-int LTR MaLR 0 1580 1212 677 151 0 0 chr3 110587845 110587943 -116936635 - THE1B LTR MaLR -245 119 22 1014 112 95 12 chr3 110587943 110588112 -116936466 + THE1B LTR MaLR 1 183 -181 336 384 95 0 chr3 110589689 110589921 -116934657 - L1M3b LINE L1 -5797 484 231 3058 242 51 60 chr3 110590155 110590814 -116933764 - L1M4b LINE L1 -2572 4385 3721 2388 100 0 0 chr3 110590814 110591124 -116933454 - AluSx SINE Alu -2 310 1 3058 242 51 60 chr3 110591124 110592440 -116932138 - L1M4b LINE L1 -3236 3721 2477 1301 259 49 42 chr3 110592606 110593256 -116931322 - L1M4b LINE L1 -4554 2405 1751 548 178 0 9 chr3 110593276 110593383 -116931195 + LTR60 LTR ERV1 1 106 -480 1434 153 57 123 chr3 110593421 110593892 -116930686 + LTR60 LTR ERV1 106 545 -41 949 192 36 81 chr3 110593735 110594069 -116930509 + TAR1 Satellite telomeric 4 322 -1789 * 2908 221 77 12 chr3 110594074 110595041 -116929537 - L1M4b LINE L1 -5134 1721 694 258 245 0 0 chr3 110595191 110595244 -116929334 - L1M4b LINE L1 -6184 675 623 707 227 80 37 chr3 110595245 110595544 -116929034 + L1M4 LINE L1 4731 5042 -1104 2668 110 8 0 chr3 110595737 110596109 -116928469 - THE1C LTR MaLR 0 375 1 4474 186 379 22 chr3 110596109 110597274 -116927304 - THE1C-int LTR MaLR 0 1580 1 2610 122 0 3 chr3 110597274 110597650 -116926928 - THE1C LTR MaLR 0 375 1 244 326 0 0 chr3 110597691 110597789 -116926789 + A-rich Low_complexity Low_complexity 1 98 0 415 229 81 57 chr3 110597805 110598015 -116926563 + L1M4 LINE L1 5166 5380 -766 4110 174 18 34 chr3 110598734 110599622 -116924956 - MER4D LTR ERV1 0 845 1 1833 46 0 5 chr3 110599796 110600012 -116924566 - AluY SINE Alu -12 299 85 269 292 161 24 chr3 110600690 110600858 -116923720 + MIR SINE MIR 59 249 -13 21 36 0 0 chr3 110600908 110600936 -116923642 + AT_rich Low_complexity Low_complexity 1 28 0 5280 181 23 19 chr3 110601350 110602568 -116922010 + L1MA9 LINE L1 5086 6311 -1 261 321 71 21 chr3 110603110 110603250 -116921328 - LTR33 LTR ERVL -236 285 139 227 212 76 0 chr3 110606896 110606962 -116917616 - HAL1 LINE L1 -2 2505 2435 252 306 18 36 chr3 110607686 110607797 -116916781 - LTR67 LTR ERVL -4 553 445 2111 111 0 10 chr3 110608366 110608654 -116915924 + AluSx SINE Alu 16 300 -12 3473 169 157 82 chr3 110608661 110609849 -116914729 - MER52C LTR ERV1 0 1278 2 1169 165 153 4 chr3 110611061 110611310 -116913268 + L1MC3 LINE L1 7480 7765 -20 400 299 21 35 chr3 110612122 110612266 -116912312 - MIR SINE MIR 0 262 121 322 269 11 11 chr3 110612741 110612797 -116911781 + CT-rich Low_complexity Low_complexity 3 61 -34 1693 203 16 42 chr3 110612797 110613181 -116911397 - MLT1A2 LTR MaLR 0 374 1 322 269 11 11 chr3 110613181 110613217 -116911361 + CT-rich Low_complexity Low_complexity 60 95 0 23 0 0 0 chr3 110613661 110613684 -116910894 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 110613712 110613734 -116910844 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr3 110614656 110614697 -116909881 + AT_rich Low_complexity Low_complexity 1 41 0 1734 210 153 2 chr3 110615253 110615677 -116908901 + MLT1D LTR MaLR 18 505 0 272 328 52 34 chr3 110616501 110616798 -116907780 - HAL1b LINE L1 -880 1458 161 1123 249 56 16 chr3 110617942 110618491 -116906087 - L1ME3A LINE L1 -68 6102 5471 300 238 16 8 chr3 110618689 110618811 -116905767 + (TA)n Simple_repeat Simple_repeat 1 123 0 8493 28 0 1 chr3 110618955 110620225 -116904353 - L1P2 LINE L1 -520 5635 4367 22 80 0 0 chr3 110620405 110620455 -116904123 + AT_rich Low_complexity Low_complexity 1 50 0 2117 164 65 10 chr3 110620548 110620950 -116903628 + MSTB LTR MaLR 3 426 0 593 325 118 0 chr3 110621689 110621917 -116902661 - MIR SINE MIR -1 261 7 312 311 58 53 chr3 110622038 110622228 -116902350 - MLT1K LTR MaLR -71 517 327 253 286 0 24 chr3 110623601 110623685 -116900893 - MLT1H LTR MaLR -13 536 455 1169 356 50 33 chr3 110624265 110625616 -116898962 + HERV16 LTR ERVL 1076 2500 -2496 355 319 44 20 chr3 110625930 110626134 -116898444 + HERV16 LTR ERVL 2695 2903 -2093 282 288 45 30 chr3 110626286 110626418 -116898160 - MLT1H LTR MaLR -310 239 106 1246 355 75 54 chr3 110626609 110628321 -116896257 + HERV16 LTR ERVL 2988 4736 -918 396 260 75 41 chr3 110628629 110628775 -116895803 + MIR SINE MIR 73 223 -39 25 31 0 0 chr3 110628866 110628898 -116895680 + AT_rich Low_complexity Low_complexity 1 32 0 446 322 42 14 chr3 110630210 110630353 -116894225 + MER91A DNA MER1_type 1 147 -49 983 250 80 40 chr3 110633186 110633634 -116890944 - MER110A LTR ERV1 -2 466 1 378 225 22 0 chr3 110633738 110633827 -116890751 - MER69A DNA AcHobo -19 158 68 21 71 0 0 chr3 110634515 110634557 -116890021 + AT_rich Low_complexity Low_complexity 1 42 0 555 278 97 4 chr3 110634563 110634822 -116889756 + MER113 DNA MER1_type? 167 449 -72 1192 188 50 4 chr3 110635072 110635312 -116889266 - MLT1A1 LTR MaLR 0 365 115 467 222 11 0 chr3 110635827 110635917 -116888661 - MLT1A1 LTR MaLR -279 95 5 328 240 10 60 chr3 110635984 110636063 -116888515 - L2 LINE L2 -10 3303 3228 1109 22 0 15 chr3 110636063 110636200 -116888378 + L1PA5 LINE L1 6016 6150 -4 328 240 10 60 chr3 110636200 110636220 -116888358 - L2 LINE L2 -85 3228 3209 259 261 18 9 chr3 110636296 110636407 -116888171 + A-rich Low_complexity Low_complexity 6 117 0 230 325 41 57 chr3 110636707 110636830 -116887748 + L2 LINE L2 3192 3312 -1 910 124 34 3 chr3 110637145 110637371 -116887207 + LTR69 LTR ERVL 4 298 -290 * 11532 151 43 6 chr3 110637369 110639363 -116885215 - Tigger1 DNA MER2_type -349 2069 2 3595 167 21 7 chr3 110639904 110640610 -116883968 - L1MA7 LINE L1 -2 6289 5574 208 75 25 25 chr3 110641143 110641183 -116883395 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr3 110641186 110641207 -116883371 + AT_rich Low_complexity Low_complexity 1 21 0 7539 31 0 1 chr3 110641352 110642781 -116881797 + L1PA3 LINE L1 4727 6152 -3 605 311 56 20 chr3 110643272 110643523 -116881055 + MLT1J LTR MaLR 1 260 -251 309 295 0 0 chr3 110643594 110643672 -116880906 + MLT1J LTR MaLR 387 464 -47 6776 195 65 13 chr3 110644320 110645343 -116879235 - L1MA7 LINE L1 -743 5403 4365 2260 82 24 0 chr3 110645343 110645511 -116879067 - AluY SINE Alu -10 301 122 270 0 0 0 chr3 110645511 110645541 -116879037 + (TTA)n Simple_repeat Simple_repeat 2 31 0 2260 82 24 0 chr3 110645541 110645664 -116878914 - AluY SINE Alu -189 122 3 6776 195 65 13 chr3 110645664 110646300 -116878278 - L1MA7 LINE L1 -1781 4365 3764 2320 206 34 2 chr3 110647100 110648108 -116876470 + Tigger6a DNA MER2_type 2 1083 0 21 36 0 0 chr3 110649035 110649063 -116875515 + AT_rich Low_complexity Low_complexity 1 28 0 1684 120 143 4 chr3 110649613 110649872 -116874706 - AluSx SINE Alu -17 295 1 249 358 64 9 chr3 110649878 110649987 -116874591 - MIR SINE MIR -115 147 33 197 258 97 32 chr3 110650114 110650176 -116874402 + L2 LINE L2 3207 3272 0 414 39 0 0 chr3 110651490 110651542 -116873036 + (TG)n Simple_repeat Simple_repeat 2 53 0 230 319 33 11 chr3 110651955 110652046 -116872532 + L2 LINE L2 3221 3313 0 1012 133 24 6 chr3 110652166 110652332 -116872246 - HUERS-P2 LTR ERV1 -274 2814 2646 12024 170 19 33 chr3 110652364 110654783 -116869795 - HUERS-P2 LTR ERV1 -532 2556 1 3793 150 51 77 chr3 110654783 110655589 -116868989 - LTR1 LTR ERV1 0 785 1 13298 181 79 16 chr3 110655589 110655747 -116868831 + L1MA2 LINE L1 1309 1456 -6267 188 33 0 33 chr3 110655747 110655777 -116868801 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 13298 181 79 16 chr3 110655777 110657559 -116867019 + L1MA2 LINE L1 1456 3124 -4599 2165 124 0 3 chr3 110657559 110657858 -116866720 + AluY SINE Alu 3 300 -11 13298 181 79 16 chr3 110657858 110658058 -116866520 + L1MA2 LINE L1 3124 3310 -4413 2340 131 16 16 chr3 110658058 110658431 -116866147 - THE1C LTR MaLR 0 375 3 13298 181 79 16 chr3 110658431 110662320 -116862258 + L1MA2 LINE L1 3310 7723 0 508 282 141 5 chr3 110662334 110662540 -116862038 + MIR SINE MIR 20 253 -9 214 157 129 14 chr3 110662720 110662790 -116861788 - MIR SINE MIR -65 197 120 758 279 63 40 chr3 110664302 110664603 -116859975 + L2 LINE L2 2185 2492 -822 450 313 48 18 chr3 110665509 110665736 -116858842 + LTR16A1 LTR ERVL 222 455 -2 27 0 0 0 chr3 110665983 110666010 -116858568 + AT_rich Low_complexity Low_complexity 1 27 0 17948 171 32 20 chr3 110668199 110668295 -116856283 + L1MA1 LINE L1 13 106 -7615 297 0 0 0 chr3 110668295 110668328 -116856250 + (CA)n Simple_repeat Simple_repeat 2 34 0 17948 171 32 20 chr3 110668328 110673273 -116851305 + L1MA1 LINE L1 106 5164 -2557 1822 180 0 10 chr3 110673273 110673578 -116851000 + AluSx SINE Alu 1 302 -10 17948 171 32 20 chr3 110673578 110676162 -116848416 + L1MA1 LINE L1 5164 7717 -4 24 32 0 0 chr3 110676213 110676244 -116848334 + AT_rich Low_complexity Low_complexity 1 31 0 1655 170 22 33 chr3 110676523 110676888 -116847690 + MER46B DNA MER2_type 1 236 0 24 0 0 0 chr3 110676975 110676999 -116847579 + AT_rich Low_complexity Low_complexity 1 24 0 231 254 84 0 chr3 110678308 110678379 -116846199 - MIR SINE MIR -21 241 165 183 398 70 16 chr3 110678415 110678543 -116846035 + L2 LINE L2 3137 3271 -1 5488 67 36 4 chr3 110679663 110680412 -116844166 + LTR17 LTR ERV1 1 773 -7 6000 76 5 17 chr3 110680433 110681327 -116843251 + HERV17 LTR ERV1 1 847 -7779 586 151 25 20 chr3 110681352 110681813 -116842765 + GA-rich Low_complexity Low_complexity 1 463 0 33308 57 9 7 chr3 110681815 110686249 -116838329 + HERV17 LTR ERV1 704 5067 -3559 13307 56 5 1 chr3 110686240 110687958 -116836620 + HERV17 LTR ERV1 6902 8626 0 * 2875 69 23 8 chr3 110687983 110688373 -116836205 + LTR17 LTR ERV1 98 493 -287 9157 49 2 4 chr3 110688473 110689693 -116834885 - L1P LINE L1 -915 5231 4015 12640 50 0 11 chr3 110689693 110690209 -116834369 + L1P LINE L1 2325 2845 -3301 2341 41 38 60 chr3 110690209 110690527 -116834051 + AluY SINE Alu 1 311 0 12640 50 0 11 chr3 110690527 110691720 -116832858 + L1P LINE L1 2845 4016 -2130 1170 308 80 27 chr3 110691720 110692318 -116832260 - L1M4b LINE L1 -6135 724 95 338 216 46 0 chr3 110692890 110693174 -116831404 + (TA)n Simple_repeat Simple_repeat 1 297 0 2029 42 15 4 chr3 110693288 110693549 -116831029 + HERV17 LTR ERV1 4804 5067 -3559 * 13337 56 5 1 chr3 110693540 110695257 -116829321 + HERV17 LTR ERV1 6902 8626 0 4770 61 48 9 chr3 110695282 110695933 -116828645 + LTR17 LTR ERV1 98 773 -7 594 88 0 0 chr3 110696130 110696210 -116828368 + MADE1 DNA Mariner 1 80 0 233 185 0 31 chr3 110696344 110696409 -116828169 + (TAA)n Simple_repeat Simple_repeat 1 63 0 2579 208 102 157 chr3 110697061 110697393 -116827185 - L1MCb LINE L1 -4851 1194 845 2412 61 0 0 chr3 110697393 110697690 -116826888 - AluY SINE Alu -14 297 1 2579 208 102 157 chr3 110697690 110698726 -116825852 - L1MCb LINE L1 -5200 845 3 26 0 0 0 chr3 110699176 110699202 -116825376 + AT_rich Low_complexity Low_complexity 1 26 0 282 158 0 53 chr3 110700553 110700610 -116823968 - L2 LINE L2 -97 3216 3163 219 372 74 16 chr3 110701676 110701797 -116822781 - L2 LINE L2 -6 3307 3180 309 247 153 0 chr3 110701989 110702074 -116822504 - MIR SINE MIR -9 253 156 309 246 36 66 chr3 110703440 110703607 -116820971 - MER103 DNA DNA -3 163 2 3710 136 28 23 chr3 110704200 110704808 -116819770 - LTR9B LTR ERV1 0 644 31 2226 83 0 39 chr3 110704808 110705120 -116819458 - AluY SINE Alu -11 300 1 3710 136 28 23 chr3 110705120 110705152 -116819426 - LTR9B LTR ERV1 -613 31 1 22 35 0 0 chr3 110705173 110705202 -116819376 + AT_rich Low_complexity Low_complexity 1 29 0 1505 200 79 103 chr3 110705527 110706272 -116818306 - LTR8A LTR ERV1 0 727 1 316 267 40 112 chr3 110706324 110706627 -116817951 - L1ME3A LINE L1 -239 5931 5651 1932 152 50 31 chr3 110706631 110707085 -116817493 - LTR8 LTR ERV1 0 691 270 2541 109 14 69 chr3 110707108 110707530 -116817048 - LTR8 LTR ERV1 -292 399 1 25 0 0 0 chr3 110707872 110707897 -116816681 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr3 110708377 110708401 -116816177 + AT_rich Low_complexity Low_complexity 1 24 0 3530 268 108 9 chr3 110708522 110708560 -116816018 + L1ME3A LINE L1 560 593 -5622 2124 211 28 70 chr3 110708560 110709199 -116815379 - LTR9 LTR ERV1 0 612 1 3530 268 108 9 chr3 110709199 110710923 -116813655 + L1ME3A LINE L1 593 2560 -3655 852 241 43 0 chr3 110710947 110711204 -116813374 + L1ME3A LINE L1 2798 3065 -3150 * 1218 219 105 46 chr3 110711201 110711526 -116813052 + L1ME3A LINE L1 4460 4823 -1392 2454 92 0 83 chr3 110711526 110711937 -116812641 + MER51B LTR ERV1 1 377 0 1218 219 105 46 chr3 110711937 110712086 -116812492 + L1ME3A LINE L1 4823 4962 -1253 277 204 86 11 chr3 110712097 110712190 -116812388 + L1MA10 LINE L1 6176 6275 -59 398 340 42 25 chr3 110712263 110712548 -116812030 + MLT1H1 LTR MaLR 1 292 -298 1488 265 62 21 chr3 110712595 110713276 -116811302 + L1ME3A LINE L1 5232 5944 -295 1163 244 118 36 chr3 110713432 110713917 -116810661 - MER101B LTR ERV1 -31 516 24 4013 199 59 4 chr3 110713953 110715142 -116809436 - L1MC3 LINE L1 -743 5403 4889 848 226 34 30 chr3 110715448 110715744 -116808834 + pTR5 LTR ERV1 732 1028 -1410 4158 132 85 23 chr3 110715819 110716597 -116807981 + LTR12 LTR ERV1 1 826 0 239 333 0 0 chr3 110717267 110717333 -116807245 + (TG)n Simple_repeat Simple_repeat 1 66 0 1800 121 21 45 chr3 110717942 110718123 -116806455 - AluSp SINE Alu 0 320 148 2392 61 10 0 chr3 110718123 110718416 -116806162 - AluY SINE Alu -15 296 1 1800 121 21 45 chr3 110718416 110718559 -116806019 - AluSp SINE Alu -172 148 3 27 0 0 0 chr3 110718565 110718592 -116805986 + AT_rich Low_complexity Low_complexity 1 27 0 2650 192 38 60 chr3 110719086 110719775 -116804803 - L1MC3 LINE L1 -11 7774 7101 16971 42 0 3 chr3 110719927 110722832 -116801746 + L1PA3 LINE L1 3213 6155 0 611 267 4 76 chr3 110722925 110723161 -116801417 - MER20 DNA MER1_type 0 219 1 5274 191 10 11 chr3 110723614 110725272 -116799306 - L1PA15 LINE L1 -348 5817 4160 1780 187 50 14 chr3 110725273 110725631 -116798947 + L1PA15 LINE L1 5794 6164 -1 764 290 21 42 chr3 110727108 110727439 -116797139 + L1MA9 LINE L1 5951 6274 -38 21 0 0 0 chr3 110727439 110727460 -116797118 + AT_rich Low_complexity Low_complexity 1 21 0 1641 209 28 6 chr3 110728934 110729289 -116795289 - MLT1A1 LTR MaLR 0 365 3 32 26 0 0 chr3 110729736 110729775 -116794803 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr3 110729787 110729809 -116794769 + AT_rich Low_complexity Low_complexity 1 22 0 2019 125 4 0 chr3 110729921 110730227 -116794351 + AluSq SINE Alu 1 307 0 1016 203 59 123 chr3 110731201 110731624 -116792954 + MSTD LTR MaLR 1 396 0 24 32 0 0 chr3 110732776 110732807 -116791771 + AT_rich Low_complexity Low_complexity 1 31 0 355 344 64 0 chr3 110733314 110733439 -116791139 - MIR3 SINE MIR -62 146 14 2482 225 110 54 chr3 110733508 110734640 -116789938 - L1M4 LINE L1 -4833 2022 816 506 172 0 179 chr3 110734640 110734791 -116789787 - FLAM_C SINE Alu -7 126 3 2482 225 110 54 chr3 110734791 110734902 -116789676 - L1M4 LINE L1 -6039 816 713 216 97 0 0 chr3 110734903 110734934 -116789644 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 6837 64 0 5 chr3 110734934 110736088 -116788490 - L1PA5 LINE L1 -11 6143 4991 452 95 105 5 chr3 110736191 110736622 -116787956 + (TA)n Simple_repeat Simple_repeat 1 474 0 180 97 0 0 chr3 110736622 110736653 -116787925 + (TTAA)n Simple_repeat Simple_repeat 3 33 0 * 345 124 89 5 chr3 110736651 110737075 -116787503 + (TA)n Simple_repeat Simple_repeat 1 459 0 41 0 0 0 chr3 110737079 110737120 -116787458 + AT_rich Low_complexity Low_complexity 1 41 0 260 168 40 0 chr3 110737136 110737237 -116787341 + (TA)n Simple_repeat Simple_repeat 2 106 0 24 0 0 0 chr3 110738029 110738053 -116786525 + AT_rich Low_complexity Low_complexity 1 24 0 1853 141 7 0 chr3 110738053 110738337 -116786241 - AluSx SINE Alu -26 286 1 23 54 0 0 chr3 110740632 110740669 -116783909 + AT_rich Low_complexity Low_complexity 1 37 0 266 266 179 73 chr3 110740982 110741200 -116783378 - MIR SINE MIR -8 254 14 7231 107 4 20 chr3 110741570 110742644 -116781934 + MER11C LTR ERVK 1 1057 -14 541 305 214 15 chr3 110742662 110743145 -116781433 + L2 LINE L2 2603 3230 -83 3606 155 41 52 chr3 110743145 110743875 -116780703 - MER72 LTR ERV1 0 722 1 541 305 214 15 chr3 110743875 110743978 -116780600 + L2 LINE L2 3230 3311 -2 2350 103 0 0 chr3 110743996 110744308 -116780270 + AluSq SINE Alu 1 312 -1 253 299 52 0 chr3 110744975 110745052 -116779526 + L2 LINE L2 3182 3262 -10 2230 97 3 0 chr3 110745626 110745936 -116778642 + AluY SINE Alu 3 313 0 1658 269 69 35 chr3 110746924 110747589 -116776989 - MER76 LTR ERV 0 688 1 798 51 31 0 chr3 110748194 110748292 -116776286 + U6 snRNA snRNA 1 101 -6 21 82 0 0 chr3 110748673 110748722 -116775856 + AT_rich Low_complexity Low_complexity 1 49 0 3435 153 22 22 chr3 110748734 110749371 -116775207 + L1MC1 LINE L1 5596 7691 -94 28 48 0 0 chr3 110749582 110749624 -116774954 + AT_rich Low_complexity Low_complexity 1 42 0 38650 69 2 2 chr3 110749624 110754665 -116769913 + L1P LINE L1 3 5044 -1102 7667 86 11 3 chr3 110754792 110755880 -116768698 + L1P LINE L1 3766 4862 -1284 17777 99 12 2 chr3 110756001 110758613 -116765965 - L1P3 LINE L1 -809 5652 3016 4924 61 25 2 chr3 110758616 110759626 -116764952 - MER11A LTR ERVK 0 1266 1 11922 128 20 36 chr3 110759627 110762617 -116761961 - L1P3 LINE L1 -3444 3017 1 225 286 0 0 chr3 110762662 110762718 -116761860 + L2 LINE L2 669 724 -2590 250 164 55 0 chr3 110762731 110762786 -116761792 - MIR SINE MIR -72 190 133 180 321 0 0 chr3 110762776 110762829 -116761749 + L2 LINE L2 1761 1813 -1501 * 555 302 142 25 chr3 110762830 110763231 -116761347 + L2 LINE L2 2149 2596 -718 586 309 204 42 chr3 110763333 110763974 -116760604 + L2 LINE L2 2576 3313 0 21 57 0 0 chr3 110764133 110764168 -116760410 + AT_rich Low_complexity Low_complexity 1 35 0 1073 243 20 0 chr3 110764195 110764442 -116760136 + L1MC3 LINE L1 7056 7307 -478 189 0 0 0 chr3 110766356 110766377 -116758201 + (A)n Simple_repeat Simple_repeat 1 21 0 1927 171 51 34 chr3 110766521 110767065 -116757513 + MLT2A2 LTR ERVL 1 554 0 23 0 0 0 chr3 110767686 110767709 -116756869 + AT_rich Low_complexity Low_complexity 1 23 0 767 265 138 73 chr3 110768672 110769193 -116755385 - MLT1H1 LTR MaLR 0 555 1 252 256 98 45 chr3 110770343 110770476 -116754102 - MLT1J2 LTR MaLR -274 176 37 1673 211 11 24 chr3 110770663 110771033 -116753545 + MLT1A1 LTR MaLR 1 365 0 26 0 0 0 chr3 110771120 110771146 -116753432 + AT_rich Low_complexity Low_complexity 1 26 0 299 329 55 88 chr3 110771189 110771517 -116753061 + L2 LINE L2 2992 3308 -5 219 69 0 0 chr3 110772433 110772462 -116752116 + (A)n Simple_repeat Simple_repeat 1 29 0 452 316 20 20 chr3 110773057 110773209 -116751369 + MIR SINE MIR 49 200 -62 287 336 9 18 chr3 110773447 110773557 -116751021 + MER94 DNA DNA 24 132 -2 28 0 0 0 chr3 110774376 110774404 -116750174 + AT_rich Low_complexity Low_complexity 1 28 0 637 315 105 41 chr3 110775200 110775619 -116748959 + MLT1J1 LTR MaLR 1 446 0 206 203 0 16 chr3 110776137 110776201 -116748377 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 4016 214 60 30 chr3 110779833 110780842 -116743736 + MER45B DNA AcHobo 1 1039 -1 29 0 0 0 chr3 110781504 110781533 -116743045 + AT_rich Low_complexity Low_complexity 1 29 0 22 56 0 0 chr3 110781790 110781826 -116742752 + AT_rich Low_complexity Low_complexity 1 36 0 2178 55 0 0 chr3 110781944 110782200 -116742378 + AluY SINE Alu 1 256 -55 422 349 60 22 chr3 110782319 110782551 -116742027 + MIR SINE MIR 1 241 -21 26 30 0 0 chr3 110783667 110783700 -116740878 + AT_rich Low_complexity Low_complexity 1 33 0 326 350 76 22 chr3 110784491 110785363 -116739215 - L1M4 LINE L1 -1515 5442 4524 3376 113 4 13 chr3 110785456 110785980 -116738598 + L1PA13 LINE L1 5645 6163 0 241 153 17 17 chr3 110786954 110787013 -116737565 + CT-rich Low_complexity Low_complexity 2 60 0 36622 91 7 12 chr3 110787299 110791405 -116733173 - L1PA5 LINE L1 0 6154 2084 2362 96 0 10 chr3 110791405 110791717 -116732861 - AluY SINE Alu -2 309 1 36622 91 7 12 chr3 110791717 110793782 -116730796 - L1PA5 LINE L1 -4070 2084 11 1764 315 86 38 chr3 110793795 110794724 -116729854 - L1M4 LINE L1 -5875 984 11 1082 276 47 21 chr3 110794731 110795290 -116729288 - L1M4 LINE L1 -1900 4246 3674 1439 192 83 0 chr3 110795352 110795664 -116728914 - MER2 DNA MER2_type -3 341 4 408 349 34 22 chr3 110795953 110796222 -116728356 + L1PA12 LINE L1 2 273 -7308 3969 200 14 9 chr3 110796287 110797568 -116727010 + L1PA16 LINE L1 4327 5613 -553 2786 177 6 19 chr3 110797639 110798177 -116726401 + L1PA16 LINE L1 5636 6166 0 27 49 0 0 chr3 110798939 110798980 -116725598 + AT_rich Low_complexity Low_complexity 1 41 0 14500 170 26 16 chr3 110799102 110804427 -116720151 - L1MA1 LINE L1 0 7721 2352 425 151 0 0 chr3 110804410 110804483 -116720095 + L1M1 LINE L1 2197 2269 -5296 * 1026 258 218 27 chr3 110804602 110805152 -116719426 - LTR50 LTR ERVL -30 765 111 243 0 0 0 chr3 110805167 110805194 -116719384 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1721 185 3 3 chr3 110805608 110805906 -116718672 + AluSq SINE Alu 1 298 -15 6348 56 0 12 chr3 110806020 110806835 -116717743 - L1PA7 LINE L1 -3 6151 5347 4676 120 8 19 chr3 110806833 110807614 -116716964 + L1PA7 LINE L1 4572 5343 -803 * 14299 99 6 1 chr3 110809461 110812327 -116712251 + L1PA7 LINE L1 3264 6152 -2 227 305 215 29 chr3 110812336 110812582 -116711996 - L2 LINE L2 -2792 522 231 260 27 27 0 chr3 110813975 110814012 -116710566 + (CA)n Simple_repeat Simple_repeat 1 38 0 249 273 80 59 chr3 110815986 110816525 -116708053 - L1M4 LINE L1 -1586 4560 4011 257 73 24 24 chr3 110816670 110816711 -116707867 - L1M4 LINE L1 -2322 3824 3784 568 214 50 14 chr3 110816853 110816993 -116707585 - MLT2D LTR ERVL -269 145 1 409 267 119 23 chr3 110817203 110817506 -116707072 - L1M4 LINE L1 -2922 3224 2893 218 277 0 0 chr3 110818553 110818600 -116705978 + L2 LINE L2 3012 3058 -255 2276 146 37 0 chr3 110818600 110818976 -116705602 - MLT1B LTR MaLR 0 390 1 180 111 0 0 chr3 110819000 110819027 -116705551 + (TTA)n Simple_repeat Simple_repeat 3 29 0 225 0 0 0 chr3 110819622 110819647 -116704931 + (CA)n Simple_repeat Simple_repeat 2 26 0 21 36 0 0 chr3 110820319 110820347 -116704231 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr3 110821036 110821071 -116703507 + AT_rich Low_complexity Low_complexity 1 35 0 881 274 53 44 chr3 110821077 110821896 -116702682 - L1MC/D LINE L1 -803 5343 4758 1446 231 41 63 chr3 110821921 110822461 -116702117 - L1ME2 LINE L1 -299 5865 5338 1342 303 61 26 chr3 110822456 110822897 -116701681 - L1ME2 LINE L1 -2103 4043 3619 * 2054 146 43 3 chr3 110822897 110823247 -116701331 + THE1B LTR MaLR 1 364 0 1342 303 61 26 chr3 110823247 110823789 -116700789 - L1ME2 LINE L1 -2527 3619 3026 24 24 0 24 chr3 110823792 110823815 -116700763 + AT_rich Low_complexity Low_complexity 1 24 -17 5794 114 7 8 chr3 110823815 110825557 -116699021 - L1PA11 LINE L1 -1 6173 4414 24 24 0 24 chr3 110825557 110825575 -116699003 + AT_rich Low_complexity Low_complexity 24 41 0 669 212 80 52 chr3 110825634 110825846 -116698732 - MER20 DNA MER1_type 0 219 2 1007 288 54 0 chr3 110825967 110826283 -116698295 - LTR16C LTR ERVL 0 491 159 30 0 0 0 chr3 110826621 110826651 -116697927 + AT_rich Low_complexity Low_complexity 1 30 0 341 302 80 75 chr3 110827092 110827466 -116697112 + HAL1 LINE L1 1800 2175 -332 276 229 68 8 chr3 110827533 110827651 -116696927 + HAL1 LINE L1 2291 2415 -92 21 36 0 0 chr3 110827755 110827783 -116696795 + AT_rich Low_complexity Low_complexity 1 28 0 24 77 0 0 chr3 110828370 110828422 -116696156 + AT_rich Low_complexity Low_complexity 1 52 0 315 333 79 35 chr3 110828821 110829166 -116695412 - L2 LINE L2 -212 3060 2696 2099 76 0 4 chr3 110829211 110829488 -116695090 + AluY SINE Alu 28 303 -8 456 19 0 0 chr3 110829491 110829544 -116695034 + (TCTA)n Simple_repeat Simple_repeat 3 55 0 282 29 0 0 chr3 110829826 110829861 -116694717 + (TG)n Simple_repeat Simple_repeat 2 36 0 270 320 19 64 chr3 110831003 110831159 -116693419 + MLT1J2 LTR MaLR 15 163 -287 25 51 0 0 chr3 110832068 110832107 -116692471 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr3 110833671 110833698 -116690880 + AT_rich Low_complexity Low_complexity 1 27 0 28 0 0 0 chr3 110833714 110833742 -116690836 + AT_rich Low_complexity Low_complexity 1 28 0 5563 131 14 10 chr3 110834090 110834590 -116689988 - L1PA16 LINE L1 0 6166 5669 1997 111 31 14 chr3 110834590 110834879 -116689699 - AluSq SINE Alu -19 294 1 5563 131 14 10 chr3 110834879 110835683 -116688895 - L1PA16 LINE L1 -497 5669 4882 306 245 20 41 chr3 110837952 110838050 -116686528 - L1M4 LINE L1 -3783 2363 2268 6225 227 95 55 chr3 110838052 110840532 -116684046 - L1MC3 LINE L1 -20 8576 5997 4203 275 41 16 chr3 110840669 110842343 -116682235 - L1MC3 LINE L1 -980 5977 4261 327 146 0 0 chr3 110842383 110842438 -116682140 + (TCCCC)n Simple_repeat Simple_repeat 4 58 0 1989 121 4 0 chr3 110842440 110842720 -116681858 - AluSq SINE Alu -32 281 1 2024 238 21 68 chr3 110843004 110843203 -116681375 - L1MC3 LINE L1 -5207 1652 1445 2379 64 0 0 chr3 110843203 110843500 -116681078 - AluY SINE Alu -14 297 1 2024 238 21 68 chr3 110843500 110844010 -116680568 - L1MC3 LINE L1 -5414 1445 976 22071 72 2 4 chr3 110844015 110847810 -116676768 - L1PA6 LINE L1 0 6154 2366 1064 168 11 0 chr3 110847910 110848095 -116676483 + Tigger1 DNA MER2_type 462 648 -1770 755 173 29 0 chr3 110848093 110848232 -116676346 + Tigger1 DNA MER2_type 2276 2418 0 * 812 260 31 14 chr3 110848270 110848493 -116676085 - MLT1D LTR MaLR -1 504 278 183 309 29 0 chr3 110848518 110848586 -116675992 - MIR SINE MIR -32 230 161 7522 56 27 1 chr3 110848722 110849735 -116674843 - L1PA5 LINE L1 -2097 4049 3011 10743 53 0 1 chr3 110849730 110851845 -116672733 + L1PA5 LINE L1 4034 6151 -3 21 0 0 0 chr3 110851880 110851901 -116672677 + AT_rich Low_complexity Low_complexity 1 21 0 1862 162 3 7 chr3 110851974 110852292 -116672286 + AluSx SINE Alu 3 319 0 15238 132 34 1 chr3 110852307 110852626 -116671952 + L1PA8 LINE L1 2869 3176 -2996 1857 76 52 4 chr3 110852626 110852877 -116671701 + AluY SINE Alu 42 304 -7 15238 132 34 1 chr3 110852877 110855819 -116668759 + L1PA8 LINE L1 3176 6159 -13 341 208 28 0 chr3 110857020 110857092 -116667486 - MER117 DNA MER1_type -106 91 18 341 380 66 0 chr3 110857903 110858161 -116666417 + L1M4 LINE L1 3705 3979 -2167 413 208 0 20 chr3 110858493 110858594 -116665984 - L1MC5 LINE L1 -50 7911 7813 346 167 0 0 chr3 110858657 110858717 -116665861 + L1PB1 LINE L1 4886 4945 -1201 283 263 87 60 chr3 110858985 110859251 -116665327 - L1M4 LINE L1 -1391 5457 5185 1241 218 17 14 chr3 110859361 110859654 -116664924 + L1MD2 LINE L1 6037 6330 -29 * 6131 120 26 1 chr3 110859643 110860711 -116663867 + L1PB1 LINE L1 5063 6151 0 248 369 46 0 chr3 110861297 110861427 -116663151 + L1MEc LINE L1 240 375 -6021 482 305 42 23 chr3 110861549 110861811 -116662767 + L1M4 LINE L1 3269 3535 -2611 * 1563 189 47 3 chr3 110861807 110862167 -116662411 - L1 LINE L1 -939 5207 4832 * 3318 273 167 51 chr3 110862149 110864180 -116660398 - L1M4 LINE L1 -4581 2268 2 1259 319 46 14 chr3 110864189 110864917 -116659661 + ERVL LTR ERVL 3866 4643 -1121 2794 234 61 31 chr3 110864920 110865899 -116658679 - L1MC3 LINE L1 0 7785 6777 2820 221 81 50 chr3 110866164 110867028 -116657550 + MER21A LTR ERV1 14 904 -27 627 337 20 16 chr3 110867090 110867342 -116657236 + MLT2F LTR ERVL 59 311 -352 652 333 70 17 chr3 110867363 110867720 -116656858 + MLT2F LTR ERVL 243 618 -45 5045 143 9 5 chr3 110867954 110869246 -116655332 - L1PA13 LINE L1 -4 6810 5498 5302 190 50 2 chr3 110869247 110870323 -116654255 + L1P LINE L1 3968 5095 -1051 4747 227 12 10 chr3 110870319 110871508 -116653070 - L1PA13 LINE L1 -2784 4013 2823 * 3420 195 0 5 chr3 110871508 110872072 -116652506 - L1PA13 LINE L1 -6160 627 67 2128 131 0 0 chr3 110872178 110872475 -116652103 - AluSg SINE Alu -8 302 6 26 0 0 0 chr3 110872482 110872508 -116652070 + AT_rich Low_complexity Low_complexity 1 26 0 35 41 0 0 chr3 110874265 110874314 -116650264 + AT_rich Low_complexity Low_complexity 1 49 0 1945 162 98 18 chr3 110874679 110875075 -116649503 - MSTA LTR MaLR 0 428 1 379 95 27 0 chr3 110875536 110875610 -116648968 + (TA)n Simple_repeat Simple_repeat 1 76 0 22 70 0 0 chr3 110879326 110879369 -116645209 + AT_rich Low_complexity Low_complexity 1 43 0 249 228 54 12 chr3 110879417 110879584 -116644994 + (TA)n Simple_repeat Simple_repeat 1 174 0 23 68 0 0 chr3 110879609 110879653 -116644925 + AT_rich Low_complexity Low_complexity 1 44 0 36 0 0 0 chr3 110879731 110879767 -116644811 + AT_rich Low_complexity Low_complexity 1 36 0 601 256 41 12 chr3 110879786 110880028 -116644550 - Charlie2 DNA MER1_type -634 2228 1980 1566 272 55 21 chr3 110880033 110880686 -116643892 - L1ME1 LINE L1 -2 6959 6288 2993 268 94 38 chr3 110880699 110882124 -116642454 - L1ME1 LINE L1 -1288 5653 4071 1539 191 0 32 chr3 110882124 110882438 -116642140 - AluJb SINE Alu -8 304 1 2993 268 94 38 chr3 110882438 110882955 -116641623 - L1ME1 LINE L1 -2870 4071 3585 652 278 18 57 chr3 110882956 110883237 -116641341 + MER110-int LTR ERV1 2476 2745 -1902 540 284 70 45 chr3 110883348 110883661 -116640917 - L1ME1 LINE L1 -5238 1185 865 776 296 87 23 chr3 110883848 110884321 -116640257 - L1ME1 LINE L1 -5824 599 97 285 29 0 0 chr3 110884332 110884366 -116640212 + (TG)n Simple_repeat Simple_repeat 1 34 0 272 173 87 39 chr3 110884391 110884495 -116640083 - Charlie2 DNA MER1_type -868 1994 1886 1293 217 50 7 chr3 110884674 110884973 -116639605 - AluJb SINE Alu 0 312 1 21 0 0 0 chr3 110885043 110885064 -116639514 + AT_rich Low_complexity Low_complexity 1 21 0 27 29 0 0 chr3 110885191 110885225 -116639353 + AT_rich Low_complexity Low_complexity 1 34 0 27 0 0 0 chr3 110885628 110885655 -116638923 + AT_rich Low_complexity Low_complexity 1 27 0 1691 161 69 31 chr3 110886457 110886806 -116637772 - THE1C LTR MaLR 0 375 14 719 206 50 7 chr3 110886801 110886942 -116637636 - LTR35 LTR ERV1 -10 608 462 * 424 171 11 11 chr3 110886990 110887078 -116637500 - LTR43 LTR ERV1 -325 277 190 536 311 44 51 chr3 110887571 110887774 -116636804 - HERV3 LTR ERV1 -298 4656 4453 1905 166 30 38 chr3 110887774 110888141 -116636437 - THE1B LTR MaLR 0 364 1 10975 109 5 13 chr3 110888141 110889734 -116634844 - THE1B-int LTR MaLR 0 1580 1 1953 154 42 22 chr3 110889734 110890091 -116634487 - THE1B LTR MaLR 0 364 1 536 311 44 51 chr3 110890091 110890274 -116634304 - HERV3 LTR ERV1 -498 4456 4271 347 349 0 0 chr3 110890632 110890738 -116633840 - HERV3 LTR ERV1 -2139 6287 6182 5126 207 40 53 chr3 110890884 110891152 -116633426 - HERV3 LTR ERV1 -234 1936 1666 203 61 30 0 chr3 110891152 110891185 -116633393 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 5126 207 40 53 chr3 110891185 110893710 -116630868 - HERV3 LTR ERV1 -504 1666 1075 784 297 4 26 chr3 110894097 110894366 -116630212 - HERV3 LTR ERV1 -5278 668 406 636 220 120 7 chr3 110894377 110894527 -116630051 - LTR35 LTR ERV1 0 618 452 499 171 59 40 chr3 110894547 110894699 -116629879 - LTR43 LTR ERV1 -258 344 190 181 212 0 0 chr3 110895259 110895292 -116629286 - L3b LINE CR1 -2 1581 1549 2306 111 0 0 chr3 110895323 110895629 -116628949 - AluSx SINE Alu -6 306 1 2253 193 136 30 chr3 110895698 110896362 -116628216 - MER50 LTR ERV1 0 734 1 409 250 96 39 chr3 110896390 110896650 -116627928 + L1ME1 LINE L1 4771 5045 -1101 2619 237 89 62 chr3 110896757 110897577 -116627001 + MER21B LTR ERV1 1 842 -21 335 239 11 11 chr3 110897619 110897711 -116626867 + L1ME2 LINE L1 6064 6155 -9 439 257 86 7 chr3 110897867 110898007 -116626571 + L1ME1 LINE L1 5482 5632 -532 3200 217 11 8 chr3 110898079 110898715 -116625863 - MER82 DNA MER2_type -6 647 10 1002 290 82 26 chr3 110898782 110899247 -116625331 + L1ME1 LINE L1 5669 6159 -7 24 0 0 0 chr3 110899251 110899275 -116625303 + AT_rich Low_complexity Low_complexity 1 24 0 393 70 0 0 chr3 110899552 110899609 -116624969 + (CA)n Simple_repeat Simple_repeat 1 57 0 7405 88 7 24 chr3 110899660 110900736 -116623842 - MER11C LTR ERVK -14 1057 1 1996 84 3 75 chr3 110901833 110902166 -116622412 - AluY SINE Alu -2 309 1 563 213 162 22 chr3 110902582 110902749 -116621829 + MER58B DNA MER1_type 152 341 0 237 33 0 0 chr3 110903076 110903106 -116621472 + (CA)n Simple_repeat Simple_repeat 2 31 0 525 165 25 0 chr3 110904185 110904306 -116620272 + CT-rich Low_complexity Low_complexity 1 124 0 1567 168 0 39 chr3 110904312 110904597 -116619981 - AluSx SINE Alu -38 274 1 27 0 0 0 chr3 110905126 110905153 -116619425 + AT_rich Low_complexity Low_complexity 1 27 0 30 45 0 0 chr3 110905252 110905296 -116619282 + AT_rich Low_complexity Low_complexity 1 44 0 248 319 44 22 chr3 110905395 110905530 -116619048 - MLT1J LTR MaLR 0 511 374 301 40 20 20 chr3 110905600 110905650 -116618928 - L1PA11 LINE L1 0 6174 6125 4409 97 2 2 chr3 110905650 110906301 -116618277 - L1PA11 LINE L1 -306 5868 5218 399 290 125 50 chr3 110906301 110906598 -116617980 - MLT1J LTR MaLR -192 319 1 359 284 60 37 chr3 110907460 110907675 -116616903 + L1M4 LINE L1 2201 2420 -3726 2299 161 26 14 chr3 110908366 110908789 -116615789 - MSTA LTR MaLR 0 428 1 351 44 0 0 chr3 110909116 110909161 -116615417 + (CA)n Simple_repeat Simple_repeat 2 46 0 1009 236 97 9 chr3 110909161 110909377 -116615201 - MER8 DNA MER2_type -2 237 3 231 125 0 0 chr3 110909396 110909436 -116615142 + (TA)n Simple_repeat Simple_repeat 2 41 0 603 203 16 31 chr3 110909443 110909571 -116615007 - MLT2D LTR ERVL -54 360 235 10591 154 10 17 chr3 110909612 110912742 -116611836 + L1MA1 LINE L1 3195 6301 -1 22 0 0 0 chr3 110913169 110913191 -116611387 + AT_rich Low_complexity Low_complexity 1 22 0 768 180 187 0 chr3 110914417 110914700 -116609878 + MER44D DNA MER2_type 2 603 -2 992 203 23 107 chr3 110915329 110915468 -116609110 + MSTD LTR MaLR 1 150 -246 900 87 79 0 chr3 110915468 110915595 -116608983 - MER85 DNA T2_type -2 137 1 992 203 23 107 chr3 110915595 110915854 -116608724 + MSTD LTR MaLR 150 396 0 252 0 0 0 chr3 110916042 110916070 -116608508 + (CA)n Simple_repeat Simple_repeat 2 29 0 429 66 0 0 chr3 110916544 110916605 -116607973 + (TG)n Simple_repeat Simple_repeat 2 62 0 263 258 11 0 chr3 110917114 110917203 -116607375 + (TA)n Simple_repeat Simple_repeat 2 91 0 259 229 76 59 chr3 110918622 110918740 -116605838 + L1MC5 LINE L1 7115 7234 -727 833 211 97 50 chr3 110918846 110919249 -116605329 - Charlie5 DNA MER1_type 0 2624 2203 289 284 69 9 chr3 110919532 110919648 -116604930 - L2 LINE L2 -684 2630 2508 392 244 107 46 chr3 110919744 110919941 -116604637 + MER65B LTR ERV1 312 520 -11 848 205 39 13 chr3 110920048 110920277 -116604301 - L1MA7 LINE L1 -1 6290 6056 315 281 36 54 chr3 110920289 110920456 -116604122 + L2 LINE L2 3150 3313 0 568 322 85 37 chr3 110920476 110920746 -116603832 - L2 LINE L2 -1814 1500 1218 583 300 18 14 chr3 110920859 110921082 -116603496 - L1ME3A LINE L1 -107 6063 5840 3269 82 37 0 chr3 110921624 110922061 -116602517 + MLT2A2 LTR ERVL 1 453 0 2292 95 7 3 chr3 110922401 110922707 -116601871 + AluSc SINE Alu 3 309 0 284 85 43 0 chr3 110923463 110923510 -116601068 + T-rich Low_complexity Low_complexity 2 50 0 29 0 0 0 chr3 110923897 110923926 -116600652 + AT_rich Low_complexity Low_complexity 1 29 0 1615 97 0 4 chr3 110924839 110925065 -116599513 - LTR12 LTR ERV1 0 714 490 391 185 33 0 chr3 110925072 110925164 -116599414 - LTR30 LTR ERV1 -80 642 548 788 66 12 0 chr3 110925164 110925328 -116599250 - LTR12 LTR ERV1 -433 281 1 4622 104 3 0 chr3 110925328 110925969 -116598609 - HERV9 LTR ERV1 0 8399 7757 1764 95 16 27 chr3 110925964 110926367 -116598211 - Harlequin LTR ERV1 -5176 1720 1275 * 1610 134 62 15 chr3 110926354 110926702 -116597876 - Harlequin LTR ERV1 -5906 990 735 * 13291 116 16 7 chr3 110926673 110929691 -116594887 - Harlequin LTR ERV1 -5434 2965 1 3742 86 319 0 chr3 110929691 110930317 -116594261 - LTR12 LTR ERV1 0 826 1 33 0 0 0 chr3 110931156 110931189 -116593389 + AT_rich Low_complexity Low_complexity 1 33 0 2169 106 3 19 chr3 110931754 110932066 -116592512 - AluY SINE Alu -4 307 1 1255 229 55 28 chr3 110933318 110933680 -116590898 + MLT1A2 LTR MaLR 1 372 -2 2077 122 3 0 chr3 110933708 110934003 -116590575 + AluSp SINE Alu 1 296 -17 1569 251 106 25 chr3 110934214 110934341 -116590237 + LTR26 LTR ERV1 51 166 -437 230 0 33 0 chr3 110934341 110934371 -116590207 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1569 251 106 25 chr3 110934371 110934752 -116589826 + LTR26 LTR ERV1 166 600 -3 1984 146 0 9 chr3 110936493 110936808 -116587770 - AluSx SINE Alu 0 312 1 451 317 67 0 chr3 110937492 110937672 -116586906 - LTR16A1 LTR ERVL 0 457 266 2605 99 3 0 chr3 110937840 110938194 -116586384 - THE1A LTR MaLR 0 355 1 10836 107 15 0 chr3 110938194 110939751 -116584827 - THE1A-int LTR MaLR 0 1580 1 2430 88 38 0 chr3 110939751 110940093 -116584485 - THE1A LTR MaLR 0 355 1 729 259 144 9 chr3 110940209 110940601 -116583977 - MLT1D LTR MaLR 0 505 1 297 0 0 0 chr3 110941141 110941174 -116583404 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 28 0 0 0 chr3 110941203 110941231 -116583347 + AT_rich Low_complexity Low_complexity 1 28 0 366 0 0 0 chr3 110941231 110941276 -116583302 - L1PA3 LINE L1 -3 6152 6108 1310 223 113 40 chr3 110941625 110942096 -116582482 + MLT1D LTR MaLR 1 505 0 369 338 66 33 chr3 110942107 110942320 -116582258 - MLT1K LTR MaLR -358 230 11 238 314 0 14 chr3 110942465 110942535 -116582043 + CT-rich Low_complexity Low_complexity 5 73 0 200 357 18 18 chr3 110943335 110943447 -116581131 + MER5A DNA MER1_type 1 112 -77 21 71 0 0 chr3 110944575 110944617 -116579961 + AT_rich Low_complexity Low_complexity 1 42 0 225 65 0 0 chr3 110947423 110947454 -116577124 + (CA)n Simple_repeat Simple_repeat 2 32 0 222 91 0 0 chr3 110947454 110947487 -116577091 + (CAT)n Simple_repeat Simple_repeat 2 34 0 294 87 0 0 chr3 110947825 110947871 -116576707 + MADE1 DNA Mariner 2 47 -33 2280 71 0 19 chr3 110949187 110949497 -116575081 - AluY SINE Alu -7 304 1 1483 106 55 0 chr3 110950628 110950846 -116573732 - MER30 DNA MER1_type 0 230 1 372 323 75 16 chr3 110951110 110951296 -116573282 - MIR SINE MIR -10 252 56 235 237 26 40 chr3 110951525 110951601 -116572977 - MLT1J LTR MaLR -61 450 376 2260 98 3 0 chr3 110951681 110951978 -116572600 - AluSp SINE Alu -13 300 3 303 284 204 17 chr3 110952068 110952244 -116572334 - MLT1J LTR MaLR -302 209 1 442 182 0 0 chr3 110952344 110952432 -116572146 + L1MA7 LINE L1 6199 6286 -5 1227 171 41 0 chr3 110952439 110952685 -116571893 + MER33 DNA MER1_type 53 308 -16 4656 189 21 20 chr3 110952701 110954284 -116570294 - L1MA7 LINE L1 -12 6279 4695 2335 196 8 43 chr3 110955665 110956572 -116568006 + L1MA6 LINE L1 4863 5736 -564 427 222 30 0 chr3 110956570 110956669 -116567909 + L1MA6 LINE L1 6195 6296 -4 * 51 42 0 0 chr3 110956669 110956741 -116567837 + AT_rich Low_complexity Low_complexity 1 72 0 24 0 0 0 chr3 110956767 110956791 -116567787 + AT_rich Low_complexity Low_complexity 1 24 0 387 100 23 46 chr3 110957641 110957771 -116566807 + (TA)n Simple_repeat Simple_repeat 1 127 0 792 187 34 17 chr3 110958262 110958516 -116566062 + MLT1C LTR MaLR 1 292 -175 961 165 85 0 chr3 110958537 110958713 -116565865 - LTR47A LTR ERVL 0 452 262 21 0 0 0 chr3 110958773 110958794 -116565784 + AT_rich Low_complexity Low_complexity 1 21 0 265 216 304 0 chr3 110959611 110959713 -116564865 + MER94 DNA DNA 1 133 -1 939 230 25 5 chr3 110960538 110960734 -116563844 + MLT1E1 LTR MaLR 3 202 -452 685 284 72 8 chr3 110960783 110961033 -116563545 + MLT1E1 LTR MaLR 386 651 -3 6793 148 25 28 chr3 110962265 110962487 -116562091 - Tigger3b DNA MER2_type -1799 1229 1008 1881 155 38 19 chr3 110962487 110962855 -116561723 - THE1C LTR MaLR 0 375 1 6793 148 25 28 chr3 110962855 110963865 -116560713 - Tigger3b DNA MER2_type -2020 1008 1 5435 246 41 3 chr3 110963910 110965592 -116558986 - L1M4c LINE L1 -2029 4703 2918 363 260 0 0 chr3 110965636 110965713 -116558865 - Tigger7 DNA MER2_type -2395 92 16 3661 236 43 8 chr3 110965745 110966798 -116557780 - L1M4c LINE L1 -4516 2137 1287 3455 269 33 6 chr3 110966874 110967703 -116556875 - L1M4c LINE L1 -5360 1293 443 406 351 37 17 chr3 110967723 110968022 -116556556 - L1 LINE L1 -5584 307 3 333 259 71 40 chr3 110968025 110968322 -116556256 + L1MEc LINE L1 1961 2266 -4130 * 541 261 50 40 chr3 110968318 110968596 -116555982 + L1MEc LINE L1 2198 2458 -3757 639 227 40 4 chr3 110968662 110968833 -116555745 - MER58B DNA MER1_type -15 326 38 4899 123 20 8 chr3 110968833 110969591 -116554987 + L1PA15 LINE L1 5381 6147 -18 341 257 14 0 chr3 110969591 110969661 -116554917 - MER58A DNA MER1_type -36 71 1 1423 211 33 0 chr3 110971060 110971359 -116553219 - AluJb SINE Alu -3 309 1 890 86 9 0 chr3 110971572 110971688 -116552890 - AluSq/x SINE Alu -184 129 13 1061 159 0 0 chr3 110971688 110971851 -116552727 + AluSg/x SINE Alu 136 298 -12 26 30 0 0 chr3 110972888 110972921 -116551657 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr3 110973245 110973266 -116551312 + AT_rich Low_complexity Low_complexity 1 21 0 1609 90 0 0 chr3 110973755 110973998 -116550580 + AluY SINE Alu 73 315 0 1602 199 7 3 chr3 110974630 110974916 -116549662 - AluJo SINE Alu -25 287 1 315 246 55 36 chr3 110975054 110975164 -116549414 + MIR SINE MIR 95 206 -56 301 219 10 62 chr3 110975504 110975600 -116548978 - L1MC4 LINE L1 -1337 6705 6615 29 28 0 0 chr3 110976044 110976080 -116548498 + AT_rich Low_complexity Low_complexity 1 36 0 4055 100 7 11 chr3 110976092 110976759 -116547819 + L1P LINE L1 4762 5426 -705 2622 197 23 41 chr3 110976982 110977701 -116546877 + L1M3 LINE L1 4780 5485 -698 195 42 0 0 chr3 110977701 110977725 -116546853 + (GA)n Simple_repeat Simple_repeat 1 24 0 2622 197 23 41 chr3 110977725 110977881 -116546697 + L1M3 LINE L1 5485 5642 -541 384 161 0 37 chr3 110978141 110978222 -116546356 + L1MA2 LINE L1 6218 6295 -9 23 54 0 0 chr3 110978500 110978537 -116546041 + AT_rich Low_complexity Low_complexity 1 37 0 22 56 0 0 chr3 110980576 110980612 -116543966 + AT_rich Low_complexity Low_complexity 1 36 0 645 275 115 79 chr3 110980689 110981256 -116543322 + MLT1G LTR MaLR 2 588 -2 26 30 0 0 chr3 110981386 110981419 -116543159 + AT_rich Low_complexity Low_complexity 1 33 0 1107 145 60 55 chr3 110981435 110981670 -116542908 - HSMAR2 DNA Mariner -2 1300 1065 597 151 0 0 chr3 110981681 110981774 -116542804 - FRAM SINE Alu -20 156 64 2200 115 0 7 chr3 110982757 110983061 -116541517 + AluSq SINE Alu 1 302 -11 362 255 15 12 chr3 110984049 110984312 -116540266 + (TA)n Simple_repeat Simple_repeat 1 264 0 1574 330 38 18 chr3 110984424 110985501 -116539077 + HERV16 LTR ERVL 1031 2218 -2778 235 131 36 24 chr3 110985535 110985619 -116538959 + (TA)n Simple_repeat Simple_repeat 2 86 0 430 287 151 44 chr3 110985691 110985740 -116538838 + HERV16 LTR ERVL 2307 2349 -2647 1958 153 39 28 chr3 110985740 110986100 -116538478 + THE1B LTR MaLR 1 364 0 430 287 151 44 chr3 110986100 110986301 -116538277 + HERV16 LTR ERVL 2349 2584 -2412 1129 180 0 19 chr3 110986352 110986563 -116538015 - AluJb SINE Alu -1 311 105 5757 220 34 7 chr3 110987566 110988785 -116535793 - L1M1 LINE L1 -6295 1270 20 22 0 0 0 chr3 110989251 110989273 -116535305 + AT_rich Low_complexity Low_complexity 1 22 0 183 80 0 0 chr3 110989614 110989639 -116534939 + (TTG)n Simple_repeat Simple_repeat 3 27 0 413 359 42 35 chr3 110990245 110990794 -116533784 + HAL1b LINE L1 100 652 -696 3278 99 2 2 chr3 110990910 110991355 -116533223 - MLT2A2 LTR ERVL -8 445 1 559 308 67 36 chr3 110991355 110991712 -116532866 + MLT1J LTR MaLR 144 511 0 26 0 0 0 chr3 110992047 110992073 -116532505 + AT_rich Low_complexity Low_complexity 1 26 0 1941 127 0 69 chr3 110992138 110992470 -116532108 - AluSx SINE Alu -3 309 1 1596 171 66 30 chr3 110992511 110992873 -116531705 - THE1C LTR MaLR 0 375 1 740 104 9 9 chr3 110995511 110995626 -116528952 + L1PA10 LINE L1 6053 6167 -1 31 88 0 0 chr3 110995707 110995787 -116528791 + AT_rich Low_complexity Low_complexity 1 80 0 21 36 0 0 chr3 110997525 110997553 -116527025 + AT_rich Low_complexity Low_complexity 1 28 0 1475 32 48 0 chr3 110998821 110999007 -116525571 + L1PA4 LINE L1 5960 6154 -1 21 71 0 0 chr3 110999389 110999431 -116525147 + AT_rich Low_complexity Low_complexity 1 42 0 1340 167 37 41 chr3 110999758 111000027 -116524551 + AluJo SINE Alu 34 301 -11 356 0 23 0 chr3 111000524 111000568 -116524010 + (CAAAA)n Simple_repeat Simple_repeat 2 46 0 4223 141 36 42 chr3 111000716 111001522 -116523056 - Tigger4(Zombi) DNA MER2_type 0 2731 1931 9935 145 16 20 chr3 111001528 111003204 -116521374 - Tigger4(Zombi) DNA MER2_type -1062 1669 1 1985 164 0 0 chr3 111003452 111003764 -116520814 - AluSx SINE Alu 0 312 1 33 56 0 0 chr3 111003820 111003874 -116520704 + AT_rich Low_complexity Low_complexity 1 54 0 227 200 0 0 chr3 111004100 111004140 -116520438 + MLT2D LTR ERVL 1 40 -374 2854 234 52 74 chr3 111004216 111005790 -116518788 + L1MCb LINE L1 9 1620 -4849 2068 320 98 18 chr3 111005923 111007113 -116517465 - L2 LINE L2 -154 3159 1869 2226 104 3 0 chr3 111007114 111007413 -116517165 - AluSc SINE Alu -9 300 1 625 319 32 32 chr3 111007457 111007739 -116516839 - L2 LINE L2 -1915 1399 1118 359 287 191 24 chr3 111008010 111008219 -116516359 - MIR SINE MIR 0 262 19 15206 228 28 30 chr3 111008284 111008403 -116516175 + L1PA15 LINE L1 1 119 -6697 2653 29 0 3 chr3 111008403 111008712 -116515866 + AluY SINE Alu 1 308 -3 15206 228 28 30 chr3 111008712 111009452 -116515126 + L1PA15 LINE L1 119 859 -5957 192 40 0 0 chr3 111009452 111009477 -116515101 + (TG)n Simple_repeat Simple_repeat 1 25 0 15206 228 28 30 chr3 111009477 111012644 -116511934 + L1PA15 LINE L1 859 4196 -2620 2809 13 0 0 chr3 111012644 111012955 -116511623 + AluY SINE Alu 1 311 0 15206 228 28 30 chr3 111012955 111015563 -116509015 + L1PA15 LINE L1 4196 6809 -7 2454 53 0 3 chr3 111016494 111016794 -116507784 + AluY SINE Alu 1 299 -12 27 87 0 0 chr3 111016913 111016982 -116507596 + AT_rich Low_complexity Low_complexity 1 69 0 29 84 0 0 chr3 111017284 111017355 -116507223 + AT_rich Low_complexity Low_complexity 1 71 0 25 83 0 0 chr3 111017376 111017436 -116507142 + AT_rich Low_complexity Low_complexity 1 60 0 23 0 0 0 chr3 111017701 111017724 -116506854 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 111017776 111017797 -116506781 + AT_rich Low_complexity Low_complexity 1 21 0 255 330 9 0 chr3 111017890 111018002 -116506576 + L1ME LINE L1 5704 5816 -305 1827 111 4 4 chr3 111018183 111018444 -116506134 + AluSq SINE Alu 24 284 -29 222 80 60 0 chr3 111018453 111018503 -116506075 + (TA)n Simple_repeat Simple_repeat 2 54 0 303 175 62 38 chr3 111018503 111018583 -116505995 + L1MCa LINE L1 1992 2073 -4353 23 0 0 0 chr3 111019463 111019486 -116505092 + AT_rich Low_complexity Low_complexity 1 23 0 5808 76 3 0 chr3 111019840 111020599 -116503979 + L1PA8 LINE L1 5396 6156 -16 1686 187 22 61 chr3 111020803 111021215 -116503363 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr3 111021376 111021398 -116503180 + AT_rich Low_complexity Low_complexity 1 22 0 1832 188 44 29 chr3 111021537 111021920 -116502658 + MSTD LTR MaLR 8 396 0 1798 166 3 0 chr3 111022081 111022389 -116502189 + AluSc SINE Alu 1 309 0 23 68 0 0 chr3 111022966 111023010 -116501568 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr3 111023364 111023385 -116501193 + AT_rich Low_complexity Low_complexity 1 21 0 323 225 12 12 chr3 111024253 111024333 -116500245 - MLT1J LTR MaLR -6 505 426 1623 191 7 0 chr3 111024883 111025192 -116499386 + AluJb SINE Alu 1 311 -1 258 346 42 78 chr3 111025984 111026370 -116498208 + MLT1J2 LTR MaLR 38 409 0 1639 209 25 22 chr3 111026854 111027218 -116497360 + MLT1A1 LTR MaLR 1 365 0 644 233 37 0 chr3 111027609 111027772 -116496806 + MER105 DNA DNA 1 169 -35 638 283 72 29 chr3 111028448 111028727 -116495851 - LTR16C LTR ERVL -33 458 168 195 349 60 34 chr3 111029091 111029240 -116495338 + L2 LINE L2 2591 2743 -571 225 352 136 0 chr3 111030636 111030724 -116493854 + L3 LINE CR1 1471 1570 -7 276 30 0 0 chr3 111031807 111031840 -116492738 + (A)n Simple_repeat Simple_repeat 1 33 0 2277 50 4 0 chr3 111031976 111032255 -116492323 - AluY SINE Alu -14 297 18 243 303 73 18 chr3 111032760 111032869 -116491709 + MIR SINE MIR 50 164 -98 244 291 55 73 chr3 111033116 111033281 -116491297 - MIR SINE MIR -56 206 45 496 42 28 0 chr3 111033791 111033862 -116490716 + (TA)n Simple_repeat Simple_repeat 2 74 0 296 226 0 0 chr3 111034574 111034627 -116489951 - MIR SINE MIR -6 256 204 2120 88 7 10 chr3 111035268 111035576 -116489002 + L1PA8 LINE L1 5864 6170 -2 395 301 176 25 chr3 111035637 111035876 -116488702 + LTR33 LTR ERVL 30 304 -217 320 293 42 42 chr3 111036038 111036205 -116488373 + L1MDa LINE L1 2439 2605 -3935 814 276 112 55 chr3 111036334 111036841 -116487737 + MLT1H LTR MaLR 14 549 0 13951 196 31 21 chr3 111040803 111042585 -116481993 - L1MA4 LINE L1 -1 6481 4718 297 0 0 0 chr3 111042585 111042618 -116481960 + (TG)n Simple_repeat Simple_repeat 2 34 0 13951 196 31 21 chr3 111042618 111042859 -116481719 - L1MA4 LINE L1 -1764 4718 4481 2248 107 3 0 chr3 111042859 111043169 -116481409 - AluY SINE Alu 0 311 1 13951 196 31 21 chr3 111043169 111044354 -116480224 - L1MA4 LINE L1 -2001 4481 3309 1420 221 10 7 chr3 111044354 111044652 -116479926 - AluJo SINE Alu -11 301 3 13951 196 31 21 chr3 111044652 111044727 -116479851 - L1MA4 LINE L1 -3173 3309 3236 2050 135 0 7 chr3 111044727 111045016 -116479562 - AluSp SINE Alu -26 287 1 13951 196 31 21 chr3 111045016 111047464 -116477114 - L1MA4 LINE L1 -3246 3236 711 406 360 63 14 chr3 111047466 111047688 -116476890 - L1MDa LINE L1 -4643 1897 1665 1045 262 100 29 chr3 111047696 111048287 -116476291 - L1M4 LINE L1 -1218 4928 4296 476 259 71 16 chr3 111048333 111048546 -116476032 + L1ME3A LINE L1 5658 5875 -318 1535 173 63 0 chr3 111048920 111049191 -116475387 - AluJb SINE Alu -12 300 13 208 143 0 0 chr3 111049545 111049580 -116474998 + (T)n Simple_repeat Simple_repeat 1 35 0 1130 276 86 25 chr3 111051201 111051301 -116473277 - LTR16A1 LTR ERVL 0 457 365 219 88 0 0 chr3 111051301 111051335 -116473243 + (CCAA)n Simple_repeat Simple_repeat 2 35 0 1130 276 86 25 chr3 111051335 111051639 -116472939 - LTR16A1 LTR ERVL -92 365 28 275 308 151 38 chr3 111054518 111054677 -116469901 - MIR SINE MIR -27 235 59 2148 108 3 3 chr3 111054721 111055018 -116469560 - AluSp SINE Alu -13 300 4 197 275 168 42 chr3 111055418 111055585 -116468993 + L2 LINE L2 3121 3308 -5 1516 198 120 33 chr3 111055638 111056063 -116468515 + MLT1C LTR MaLR 6 467 0 183 371 57 16 chr3 111056139 111056263 -116468315 - L2 LINE L2 -42 3230 3102 241 294 24 12 chr3 111056496 111056581 -116467997 + (TATATG)n Simple_repeat Simple_repeat 1 86 0 1982 126 0 3 chr3 111056664 111056981 -116467597 - AluSx SINE Alu 0 316 1 2137 92 11 7 chr3 111057784 111058106 -116466472 + AluSc SINE Alu 1 323 0 220 372 12 0 chr3 111059276 111059362 -116465216 - MIR3 SINE MIR -41 167 81 27 49 0 0 chr3 111060691 111060732 -116463846 + AT_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr3 111060752 111060774 -116463804 + AT_rich Low_complexity Low_complexity 1 22 0 240 253 61 20 chr3 111061816 111061915 -116462663 + MIR SINE MIR 119 221 -41 24 32 0 0 chr3 111061945 111061976 -116462602 + AT_rich Low_complexity Low_complexity 1 31 0 189 282 167 0 chr3 111062003 111062081 -116462497 - L2 LINE L2 -270 3043 2953 369 386 73 26 chr3 111062148 111062490 -116462088 - L2 LINE L2 -475 2839 2482 335 209 0 22 chr3 111062988 111063079 -116461499 + (CACG)n Simple_repeat Simple_repeat 2 90 0 215 338 0 0 chr3 111063420 111063491 -116461087 + (TAGA)n Simple_repeat Simple_repeat 4 74 0 28 48 0 0 chr3 111063516 111063558 -116461020 + AT_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr3 111063665 111063695 -116460883 + AT_rich Low_complexity Low_complexity 1 30 0 368 295 123 57 chr3 111063865 111063948 -116460630 - MIR SINE MIR -19 243 167 1596 179 135 49 chr3 111063948 111064378 -116460200 + MLT1C LTR MaLR 1 467 0 368 295 123 57 chr3 111064378 111064521 -116460057 - MIR SINE MIR -95 167 2 23 33 0 0 chr3 111064693 111064723 -116459855 + AT_rich Low_complexity Low_complexity 1 30 0 2090 130 19 30 chr3 111065206 111065574 -116459004 + THE1B LTR MaLR 1 364 0 10916 109 11 11 chr3 111065574 111067148 -116457430 + THE1B-int LTR MaLR 1 1574 -6 2018 161 14 22 chr3 111067153 111067520 -116457058 + THE1B LTR MaLR 1 364 0 254 390 18 30 chr3 111067705 111067869 -116456709 - MIR3 SINE MIR -41 167 6 502 111 0 12 chr3 111069789 111069870 -116454708 + MADE1 DNA Mariner 1 80 0 1663 172 128 31 chr3 111070103 111070493 -116454085 + MSTA LTR MaLR 1 428 0 2010 169 37 3 chr3 111070887 111071213 -116453365 - MER21B LTR ERV1 -373 490 154 9084 164 21 41 chr3 111071224 111072952 -116451626 - MER21-int LTR ERV1 -74 4117 2424 231 216 257 0 chr3 111073041 111073115 -116451463 - L2 LINE L2 -4 3309 3217 24 32 0 0 chr3 111073668 111073699 -116450879 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr3 111073715 111073744 -116450834 + AT_rich Low_complexity Low_complexity 1 29 0 1504 83 0 23 chr3 111074243 111074461 -116450117 + AluY SINE Alu 96 308 -3 25 65 0 0 chr3 111074683 111074729 -116449849 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr3 111075471 111075496 -116449082 + AT_rich Low_complexity Low_complexity 1 25 0 1343 282 54 5 chr3 111077316 111077759 -116446819 - MLT1F LTR MaLR 0 542 39 323 262 16 118 chr3 111078019 111078206 -116446372 - MLT1F-int LTR MaLR -240 1131 964 2037 214 72 4 chr3 111078609 111079080 -116445498 + MLT1D LTR MaLR 1 503 -2 408 276 75 30 chr3 111079145 111079344 -116445234 - MLT1F-int LTR MaLR -765 606 399 352 339 33 0 chr3 111079407 111079528 -116445050 - MLT1F LTR MaLR -404 138 14 1902 207 3 8 chr3 111079650 111080017 -116444561 - MLT1A1 LTR MaLR 0 365 1 219 69 0 0 chr3 111080021 111080050 -116444528 + (TG)n Simple_repeat Simple_repeat 1 29 0 202 153 35 24 chr3 111080098 111080183 -116444395 + (TA)n Simple_repeat Simple_repeat 2 87 0 259 177 26 53 chr3 111080184 111080297 -116444281 + (TTATA)n Simple_repeat Simple_repeat 1 110 0 * 276 162 40 14 chr3 111080224 111080298 -116444280 + (TATAA)n Simple_repeat Simple_repeat 5 80 0 242 233 11 11 chr3 111080780 111080870 -116443708 + T-rich Low_complexity Low_complexity 3 92 0 522 364 32 5 chr3 111082697 111082917 -116441661 + L2 LINE L2 2432 2657 -657 286 187 110 33 chr3 111082969 111083060 -116441518 - Charlie4 DNA MER1_type -39 1922 1825 236 359 170 0 chr3 111083100 111083312 -116441266 + L2 LINE L2 2708 2955 -359 1145 201 102 35 chr3 111084764 111085047 -116439531 + AluJo SINE Alu 1 302 0 273 135 0 0 chr3 111085047 111085099 -116439479 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 267 343 9 30 chr3 111085918 111086148 -116438430 + L1PA12 LINE L1 143 1051 -6534 2572 170 64 59 chr3 111086894 111087459 -116437119 + L1M3 LINE L1 4772 5333 -847 2084 138 0 6 chr3 111087459 111087771 -116436807 - AluY SINE Alu 0 311 2 2572 170 64 59 chr3 111087771 111087897 -116436681 + L1M3 LINE L1 5333 5469 -711 3904 154 26 23 chr3 111087897 111088635 -116435943 + L1PA15 LINE L1 5418 6157 -8 2572 170 64 59 chr3 111088635 111088654 -116435924 + L1M3 LINE L1 5469 5486 -694 30 45 0 0 chr3 111088971 111089015 -116435563 + AT_rich Low_complexity Low_complexity 1 44 0 417 39 0 0 chr3 111089561 111089612 -116434966 + (TG)n Simple_repeat Simple_repeat 2 52 0 37 39 0 0 chr3 111090288 111090339 -116434239 + AT_rich Low_complexity Low_complexity 1 51 0 988 272 131 22 chr3 111090379 111090699 -116433879 + L1MDa LINE L1 420 774 -5766 265 227 0 31 chr3 111090926 111091023 -116433555 + GA-rich Low_complexity Low_complexity 3 96 0 1783 174 47 19 chr3 111091430 111091793 -116432785 + THE1C LTR MaLR 1 373 -2 6485 158 58 2 chr3 111091795 111092925 -116431653 + THE1C-int LTR MaLR 1 1193 -387 1070 196 34 17 chr3 111092926 111093161 -116431417 + THE1C LTR MaLR 137 375 0 414 219 42 0 chr3 111093346 111093442 -116431136 - L1MC1 LINE L1 -1 6332 6233 * 1808 168 12 75 chr3 111093432 111093843 -116430735 - L1MC/D LINE L1 -655 5689 5305 443 127 0 42 chr3 111093844 111093915 -116430663 + AluS SINE Alu 223 290 -22 838 250 16 16 chr3 111093916 111094164 -116430414 - L1MC/D LINE L1 -832 5314 5067 39 50 0 0 chr3 111095150 111095210 -116429368 + AT_rich Low_complexity Low_complexity 1 60 0 239 222 0 0 chr3 111095600 111095645 -116428933 + MLT1I LTR MaLR 86 130 -279 393 22 0 0 chr3 111095983 111096029 -116428549 + (TG)n Simple_repeat Simple_repeat 1 46 0 1900 162 17 17 chr3 111096043 111096394 -116428184 - Tigger2a DNA MER2_type -38 396 46 1053 172 39 34 chr3 111096416 111096620 -116427958 + MER7C DNA MER2_type 14 218 -384 1306 120 70 0 chr3 111097021 111097221 -116427357 + MER30 DNA MER1_type 17 230 0 * 1904 164 59 13 chr3 111097221 111097591 -116426987 + MER7C DNA MER2_type 211 597 -5 29 28 0 0 chr3 111097611 111097647 -116426931 + AT_rich Low_complexity Low_complexity 1 36 0 199 133 17 33 chr3 111097658 111097718 -116426860 + (TATG)n Simple_repeat Simple_repeat 2 60 0 211 200 0 0 chr3 111098985 111099020 -116425558 + (TATG)n Simple_repeat Simple_repeat 4 38 0 399 41 0 0 chr3 111099020 111099069 -116425509 + (GA)n Simple_repeat Simple_repeat 2 50 0 581 165 0 0 chr3 111099069 111099166 -116425412 - AluSg/x SINE Alu -40 270 174 1236 230 104 56 chr3 111099169 111099582 -116424996 + MLT2B1 LTR ERVL 10 442 -78 306 0 0 0 chr3 111099591 111099625 -116424953 + (CA)n Simple_repeat Simple_repeat 2 35 0 410 313 70 68 chr3 111099627 111099982 -116424596 - LTR33A LTR ERVL -167 356 1 4057 46 0 4 chr3 111099995 111100497 -116424081 + L1PA5 LINE L1 5650 6149 -5 25 0 0 0 chr3 111100653 111100678 -116423900 + AT_rich Low_complexity Low_complexity 1 25 0 474 361 94 14 chr3 111100771 111101059 -116423519 - L2 LINE L2 -421 2893 2583 1946 212 60 54 chr3 111101126 111101379 -116423199 + MLT1D LTR MaLR 7 266 -239 237 33 0 0 chr3 111101379 111101409 -116423169 + (GA)n Simple_repeat Simple_repeat 1 30 0 1946 212 60 54 chr3 111101409 111101651 -116422927 + MLT1D LTR MaLR 266 505 0 254 339 136 53 chr3 111101662 111101948 -116422630 - L2 LINE L2 -801 2513 2171 1695 140 75 10 chr3 111101948 111102241 -116422337 - AluSx SINE Alu 0 312 1 254 339 136 53 chr3 111102241 111102426 -116422152 - L2 LINE L2 -1143 2171 2003 550 131 0 13 chr3 111102432 111102564 -116422014 - MER107 DNA MER1_type 0 197 1 488 187 11 0 chr3 111102979 111103070 -116421508 + MLT2D LTR ERVL 1 92 -322 506 16 16 0 chr3 111103089 111103152 -116421426 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 233 118 0 0 chr3 111103169 111103203 -116421375 + MLT2C1 LTR ERVL 353 386 -11 1493 191 0 32 chr3 111104317 111104600 -116419978 + AluJo SINE Alu 1 274 -38 21 57 0 0 chr3 111106100 111106135 -116418443 + AT_rich Low_complexity Low_complexity 1 35 0 1664 173 58 79 chr3 111106840 111106916 -116417662 + MLT1B LTR MaLR 1 77 -313 1516 224 36 14 chr3 111106916 111107273 -116417305 + MER47A DNA MER2_type 1 365 -1 1664 173 58 79 chr3 111107273 111107590 -116416988 + MLT1B LTR MaLR 77 386 -4 1780 154 0 3 chr3 111107732 111108017 -116416561 + AluSg SINE Alu 22 305 -5 289 291 89 38 chr3 111108765 111109057 -116415521 + L1MCc LINE L1 1129 1435 -4988 715 237 83 26 chr3 111109095 111109527 -116415051 + L1ME1 LINE L1 4965 5423 -743 520 197 164 7 chr3 111109529 111109681 -116414897 + L1ME1 LINE L1 5511 5686 -480 671 306 41 4 chr3 111109686 111109931 -116414647 + L1ME1 LINE L1 5893 6146 -20 1353 183 12 43 chr3 111109949 111110294 -116414284 + L1MA3 LINE L1 5972 6305 0 360 301 22 11 chr3 111110306 111110489 -116414089 + L1MCc LINE L1 3105 3289 -3652 2550 194 51 12 chr3 111110651 111111237 -116413341 + L1MC1 LINE L1 5724 6332 -1 236 167 19 148 chr3 111111225 111111333 -116413245 + L1MCc LINE L1 3480 3573 -3368 * 4697 187 13 126 chr3 111111329 111112708 -116411870 - L1P4 LINE L1 -3264 2882 1659 * 11079 199 11 18 chr3 111112697 111115140 -116409438 + L1P4 LINE L1 2880 5306 -840 1127 130 73 0 chr3 111115143 111115359 -116409219 + L1P4 LINE L1 5369 5610 -556 4163 132 22 1 chr3 111115459 111116135 -116408443 + L1PA13 LINE L1 5466 6155 -8 249 117 33 50 chr3 111116159 111116219 -116408359 + L1MCc LINE L1 3557 3615 -3326 * 599 265 30 19 chr3 111116212 111116476 -116408102 + L1M4 LINE L1 4828 5094 -1052 486 277 82 11 chr3 111116487 111116754 -116407824 - L1MDa LINE L1 -4559 1981 1696 431 295 63 34 chr3 111116830 111117037 -116407541 + L1MC4 LINE L1 6687 6899 -1143 * 6771 188 16 12 chr3 111117029 111117903 -116406675 + L1P5 LINE L1 3880 4749 -1407 1716 167 7 23 chr3 111117903 111118203 -116406375 + AluJb SINE Alu 1 295 -17 6771 188 16 12 chr3 111118203 111119068 -116405510 + L1P5 LINE L1 4749 5625 -531 2115 162 3 3 chr3 111119091 111119461 -116405117 - L1P LINE L1 -1228 4918 4549 238 301 58 6 chr3 111119521 111119694 -116404884 + L1MC5 LINE L1 7261 7442 -519 2275 72 10 16 chr3 111122170 111122476 -116402102 + AluY SINE Alu 1 304 -7 288 267 12 0 chr3 111122536 111122622 -116401956 + MER117 DNA MER1_type 17 103 -94 2338 203 25 6 chr3 111122900 111123379 -116401199 + Tigger1 DNA MER2_type 1 488 -1930 329 207 13 0 chr3 111123479 111123629 -116400949 + (TA)n Simple_repeat Simple_repeat 1 152 0 356 89 69 0 chr3 111123685 111123786 -116400792 + (TA)n Simple_repeat Simple_repeat 1 108 0 368 338 42 13 chr3 111124096 111124333 -116400245 + HERVL LTR ERVL 4705 4948 -706 576 375 48 12 chr3 111124879 111125210 -116399368 + LTR16A LTR ERVL 9 351 -99 236 237 0 26 chr3 111126183 111126259 -116398319 + (TA)n Simple_repeat Simple_repeat 2 75 0 355 317 17 61 chr3 111126580 111126760 -116397818 + L2 LINE L2 2615 2786 -528 1889 179 56 3 chr3 111126766 111126952 -116397626 - MLT1B LTR MaLR 0 390 215 387 0 0 0 chr3 111126952 111126995 -116397583 + (TG)n Simple_repeat Simple_repeat 2 44 0 1889 179 56 3 chr3 111126995 111127165 -116397413 - MLT1B LTR MaLR -175 215 15 230 348 64 68 chr3 111127206 111127442 -116397136 + L2 LINE L2 2805 3039 -274 246 136 0 0 chr3 111127575 111127619 -116396959 + (GA)n Simple_repeat Simple_repeat 2 45 0 26 0 0 0 chr3 111127849 111127875 -116396703 + AT_rich Low_complexity Low_complexity 1 26 0 180 378 47 24 chr3 111127967 111128094 -116396484 - MIR SINE MIR -110 152 23 1887 128 36 77 chr3 111129078 111129469 -116395109 - THE1C LTR MaLR 0 375 1 23 54 0 0 chr3 111129652 111129689 -116394889 + AT_rich Low_complexity Low_complexity 1 37 0 30 59 0 0 chr3 111129722 111129773 -116394805 + AT_rich Low_complexity Low_complexity 1 51 0 2145 163 8 5 chr3 111130531 111130911 -116393667 + L1MB1 LINE L1 5492 5872 -296 278 228 18 0 chr3 111130916 111130973 -116393605 + MLT1A2 LTR MaLR 317 374 0 1329 222 26 105 chr3 111131030 111131458 -116393120 + MLT1D-int LTR MaLR 960 1353 -18 1429 233 44 59 chr3 111131471 111131930 -116392648 + MLT1D LTR MaLR 1 452 -53 283 261 0 45 chr3 111134305 111134393 -116390185 - MLT1J2 LTR MaLR -3 447 364 243 0 0 0 chr3 111135983 111136010 -116388568 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 5352 138 24 22 chr3 111136105 111136155 -116388423 - Tigger3(Golem) DNA MER2_type 0 3029 2981 2282 75 0 3 chr3 111136155 111136448 -116388130 + AluY SINE Alu 1 292 -19 5352 138 24 22 chr3 111136448 111137377 -116387201 - Tigger3(Golem) DNA MER2_type -48 2981 2049 228 289 0 0 chr3 111137591 111137681 -116386897 + (TA)n Simple_repeat Simple_repeat 1 90 0 1766 140 7 4 chr3 111137682 111137953 -116386625 - AluSx SINE Alu -20 292 21 21 0 0 0 chr3 111137956 111137977 -116386601 + AT_rich Low_complexity Low_complexity 1 21 0 403 205 24 0 chr3 111138051 111138134 -116386444 + HsTC2 DNA Tc2 3 87 -1811 252 0 0 0 chr3 111138911 111138939 -116385639 + (TA)n Simple_repeat Simple_repeat 2 29 0 1373 146 50 81 chr3 111138952 111139274 -116385304 - AluJb SINE Alu 0 312 1 2341 125 23 114 chr3 111139794 111140363 -116384215 - L1MC1 LINE L1 -1 6332 5816 21 0 0 0 chr3 111141106 111141127 -116383451 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr3 111141226 111141275 -116383303 + AT_rich Low_complexity Low_complexity 1 49 0 461 227 8 45 chr3 111141628 111141760 -116382818 - MER63 DNA MER1_type -82 754 2 1808 262 62 13 chr3 111141796 111142391 -116382187 + MLT1E2 LTR MaLR 1 624 -2 21 0 0 0 chr3 111142699 111142720 -116381858 + AT_rich Low_complexity Low_complexity 1 21 0 2329 114 0 0 chr3 111145025 111145332 -116379246 - AluSc SINE Alu -2 307 1 21 0 0 0 chr3 111145554 111145575 -116379003 + AT_rich Low_complexity Low_complexity 1 21 0 1022 324 39 24 chr3 111146138 111146675 -116377903 - ERVL LTR ERVL -4352 1412 868 496 275 0 30 chr3 111146760 111146891 -116377687 - MER52A LTR ERV1 -108 1647 1521 * 547 259 29 83 chr3 111146870 111147298 -116377280 - MER52A LTR ERV1 -289 731 523 772 232 7 13 chr3 111147433 111147584 -116376994 - MER52A LTR ERV1 -943 812 663 461 314 32 22 chr3 111147670 111147855 -116376723 - ERVL LTR ERVL -5071 693 507 292 199 64 14 chr3 111148395 111148536 -116376042 + (TA)n Simple_repeat Simple_repeat 2 149 0 335 357 76 49 chr3 111149008 111149271 -116375307 + L3 LINE CR1 476 745 -832 1363 204 79 26 chr3 111150045 111150388 -116374190 - MLT1A1 LTR MaLR 0 365 5 318 50 0 0 chr3 111150507 111150547 -116374031 + (TG)n Simple_repeat Simple_repeat 1 40 0 613 326 132 24 chr3 111151526 111152078 -116372500 - L3 LINE CR1 -185 1392 781 22 0 0 0 chr3 111152134 111152156 -116372422 + AT_rich Low_complexity Low_complexity 1 22 0 3966 179 27 51 chr3 111152189 111153090 -116371488 - L1MA9 LINE L1 -76 6236 5358 224 246 18 0 chr3 111153094 111153151 -116371427 + (TATATG)n Simple_repeat Simple_repeat 2 59 0 21 0 0 0 chr3 111153745 111153766 -116370812 + AT_rich Low_complexity Low_complexity 1 21 0 205 161 0 0 chr3 111154116 111154147 -116370431 + (TATG)n Simple_repeat Simple_repeat 2 32 0 216 0 0 0 chr3 111154211 111154235 -116370343 + (TTAA)n Simple_repeat Simple_repeat 2 25 0 1252 236 3 17 chr3 111154235 111154527 -116370051 - AluJo SINE Alu -22 290 3 2005 114 4 4 chr3 111155287 111155567 -116369011 + AluSx SINE Alu 8 287 -25 257 100 20 0 chr3 111155568 111155618 -116368960 + (CA)n Simple_repeat Simple_repeat 2 52 0 222 37 0 0 chr3 111155749 111155776 -116368802 + (CA)n Simple_repeat Simple_repeat 2 28 0 236 123 31 31 chr3 111155787 111155852 -116368726 + (TA)n Simple_repeat Simple_repeat 2 66 0 2949 214 38 17 chr3 111156773 111156931 -116367647 + MER67C LTR ERV1 3 156 -554 4892 43 7 0 chr3 111156931 111157532 -116367046 + L1PA4 LINE L1 5550 6154 -1 2949 214 38 17 chr3 111157532 111158065 -116366513 + MER67C LTR ERV1 156 708 -2 28 0 0 0 chr3 111158135 111158163 -116366415 + AT_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr3 111158387 111158418 -116366160 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 111158508 111158529 -116366049 + AT_rich Low_complexity Low_complexity 1 21 0 633 203 0 0 chr3 111159483 111159601 -116364977 - L1PA15 LINE L1 -13 6152 6035 1895 184 53 126 chr3 111161588 111162272 -116362306 - LTR27 LTR ERV1 0 636 3 14432 158 39 49 chr3 111162273 111165656 -116358922 - LTR27-int LTR ERV1 -1 6995 2615 2190 148 41 8 chr3 111165653 111166046 -116358532 - LTR27-int LTR ERV1 -3882 2381 1976 * 736 197 7 40 chr3 111166052 111166204 -116358374 - LTR27-int LTR ERV1 -4808 1138 992 932 169 0 0 chr3 111166243 111166397 -116358181 - AluSg/x SINE Alu -1 311 158 372 125 0 31 chr3 111166435 111166499 -116358079 - LTR27-int LTR ERV1 -907 3973 3912 5348 244 45 41 chr3 111166506 111168168 -116356410 - LTR27-int LTR ERV1 -435 4782 1 2210 181 41 118 chr3 111168173 111168858 -116355720 - LTR27 LTR ERV1 -2 634 3 38 61 0 0 chr3 111169338 111169404 -116355174 + AT_rich Low_complexity Low_complexity 1 66 0 508 79 26 0 chr3 111170703 111170779 -116353799 - MADE1 DNA Mariner 0 80 3 2589 223 14 20 chr3 111172272 111173284 -116351294 - L1MC/D LINE L1 -685 5648 4644 20399 195 20 21 chr3 111173293 111176412 -116348166 - L1PA12 LINE L1 -15 7591 4471 2131 114 7 13 chr3 111176412 111176718 -116347860 - AluSq SINE Alu -9 304 1 20399 195 20 21 chr3 111176718 111177602 -116346976 - L1PA12 LINE L1 -3135 4471 3588 1834 128 35 3 chr3 111177602 111177892 -116346686 + AluSg SINE Alu 1 299 -11 20399 195 20 21 chr3 111177892 111178170 -116346408 - L1PA12 LINE L1 -4018 3588 3311 2392 95 0 0 chr3 111178170 111178475 -116346103 - AluY SINE Alu -6 305 1 20399 195 20 21 chr3 111178475 111178616 -116345962 - L1PA12 LINE L1 -4295 3311 3171 1791 151 18 21 chr3 111178616 111178922 -116345656 - AluSx SINE Alu 0 305 1 20399 195 20 21 chr3 111178922 111180770 -116343808 - L1PA12 LINE L1 -4435 3171 486 456 293 91 11 chr3 111180976 111181263 -116343315 + MER20B DNA MER1_type 343 652 -131 1409 167 32 25 chr3 111181335 111181617 -116342961 + MER44D DNA MER2_type 49 602 -7 520 322 47 28 chr3 111182607 111182818 -116341760 - MIR SINE MIR -19 243 29 209 397 35 0 chr3 111182975 111183116 -116341462 + MIR SINE MIR 43 188 -74 23 0 0 0 chr3 111183716 111183739 -116340839 + AT_rich Low_complexity Low_complexity 1 23 0 321 100 0 0 chr3 111184533 111184583 -116339995 + (CA)n Simple_repeat Simple_repeat 1 50 0 1757 151 70 0 chr3 111185081 111185365 -116339213 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr3 111185905 111185927 -116338651 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr3 111186098 111186124 -116338454 + AT_rich Low_complexity Low_complexity 1 26 0 437 305 243 13 chr3 111186602 111186907 -116337671 - L2 LINE L2 -1 3312 2938 1760 170 75 3 chr3 111187412 111187770 -116336808 - L1MB1 LINE L1 -4 6164 5781 1849 139 30 3 chr3 111187885 111188188 -116336390 - Tigger3(Golem) DNA MER2_type -980 2049 1739 774 204 21 0 chr3 111188185 111188327 -116336251 - Tigger3(Golem) DNA MER2_type -2884 145 1 * 2030 265 65 30 chr3 111188780 111189617 -116334961 + L1MD2 LINE L1 5491 6356 -3 234 268 21 0 chr3 111189791 111189888 -116334690 + (TA)n Simple_repeat Simple_repeat 2 100 0 29 70 0 0 chr3 111189942 111189999 -116334579 + AT_rich Low_complexity Low_complexity 1 57 0 2152 104 0 26 chr3 111190590 111190898 -116333680 + AluSx SINE Alu 4 303 -9 23 48 0 48 chr3 111194063 111194126 -116330452 + AT_rich Low_complexity Low_complexity 1 60 0 180 77 0 0 chr3 111194961 111194987 -116329591 + (TG)n Simple_repeat Simple_repeat 1 26 0 26 30 0 0 chr3 111195116 111195149 -116329429 + AT_rich Low_complexity Low_complexity 1 33 0 13040 182 7 23 chr3 111195228 111197410 -116327168 + MER66A-int LTR ERV1 4612 6291 -385 864 150 0 0 chr3 111197410 111197537 -116327041 + FLAM_C SINE Alu 1 127 -6 13040 182 7 23 chr3 111197537 111197918 -116326660 + MER66A-int LTR ERV1 6291 6676 0 2078 209 27 11 chr3 111197925 111198370 -116326208 + MER66A LTR ERV1 27 478 0 633 266 38 50 chr3 111198372 111198796 -116325782 + L1ME1 LINE L1 5634 6125 -41 1817 149 51 38 chr3 111198796 111199166 -116325412 - THE1C LTR MaLR 0 375 1 633 266 38 50 chr3 111199166 111199191 -116325387 + L1ME1 LINE L1 6125 6149 -17 900 267 100 61 chr3 111199196 111200125 -116324453 + L1M4 LINE L1 2474 3438 -2708 1876 217 68 12 chr3 111200133 111200561 -116324017 - MER66A LTR ERV1 0 478 27 913 252 59 8 chr3 111200610 111200938 -116323640 - L1ME LINE L1 -554 5610 5265 1874 118 0 59 chr3 111201022 111201353 -116323225 + AluSx SINE Alu 1 313 0 1032 89 0 0 chr3 111201383 111201518 -116323060 - THE1B LTR MaLR 0 364 230 465 132 0 0 chr3 111201506 111201574 -116323004 - THE1B LTR MaLR -295 69 2 * 4854 72 2 0 chr3 111201689 111202325 -116322253 - L1PA7 LINE L1 -4 6150 5514 422 337 67 44 chr3 111202370 111202875 -116321703 - L1MEc LINE L1 -4318 2078 1562 513 326 70 22 chr3 111202981 111203254 -116321324 + L2 LINE L2 1789 2074 -1240 2423 56 7 3 chr3 111203254 111203560 -116321018 - AluY SINE Alu -4 307 1 375 208 0 94 chr3 111203579 111203675 -116320903 + MLT1-int LTR MaLR 1067 1153 -218 183 42 0 0 chr3 111203766 111203790 -116320788 + (TTG)n Simple_repeat Simple_repeat 1 24 0 994 239 40 16 chr3 111204455 111204702 -116319876 - MLT1E1 LTR MaLR 0 654 402 375 280 197 5 chr3 111204735 111204953 -116319625 - MLT1E1 LTR MaLR -390 264 5 1831 289 76 29 chr3 111205757 111206844 -116317734 - L1ME LINE L1 -1668 4478 3340 583 245 19 0 chr3 111206977 111207132 -116317446 - L1ME LINE L1 -3483 2663 2506 4976 208 18 7 chr3 111207223 111209260 -116315318 - L1PA15 LINE L1 0 7584 5531 2423 143 45 1 chr3 111209252 111209992 -116314586 - L1PA15 LINE L1 -4625 2940 2105 * 4923 273 30 29 chr3 111209997 111212736 -116311842 - L1PA12 LINE L1 -3959 3625 998 2343 255 47 83 chr3 111212862 111213382 -116311196 - L1MEc LINE L1 -5208 1188 651 1512 120 22 0 chr3 111213382 111213607 -116310971 - MER30 DNA MER1_type 0 230 1 2343 255 47 83 chr3 111213607 111214282 -116310296 - L1MEc LINE L1 -5745 651 36 216 263 25 25 chr3 111215637 111215717 -116308861 + MIR SINE MIR 182 261 -1 685 271 107 18 chr3 111216358 111216639 -116307939 + L1ME4a LINE L1 4463 4768 -1378 392 325 86 19 chr3 111216802 111217116 -116307462 + L1ME4a LINE L1 5563 5897 -224 248 270 9 26 chr3 111217275 111217390 -116307188 + L1ME4a LINE L1 5990 6102 -19 28 0 0 0 chr3 111218542 111218570 -116306008 + AT_rich Low_complexity Low_complexity 1 28 0 1899 148 40 35 chr3 111218934 111219307 -116305271 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr3 111220013 111220036 -116304542 + AT_rich Low_complexity Low_complexity 1 23 0 587 350 70 0 chr3 111220204 111220504 -116304074 - LTR16C LTR ERVL 0 491 171 253 232 0 14 chr3 111221490 111221592 -116302986 + CT-rich Low_complexity Low_complexity 1 100 0 5477 110 27 6 chr3 111221819 111223261 -116301317 - L1PA13 LINE L1 -2 6161 4690 21 0 0 0 chr3 111224982 111225003 -116299575 + GC_rich Low_complexity Low_complexity 1 21 0 1250 187 53 18 chr3 111225310 111225594 -116298984 - AluJb SINE Alu -14 298 5 263 246 0 0 chr3 111225838 111225895 -116298683 - MIR SINE MIR -124 138 82 5050 180 34 4 chr3 111226337 111226911 -116297667 + L1PA15 LINE L1 4710 5265 -900 282 29 0 0 chr3 111226911 111226946 -116297632 + (CA)n Simple_repeat Simple_repeat 2 36 0 5050 180 34 4 chr3 111226946 111227785 -116296793 + L1PA15 LINE L1 5265 6156 -9 359 197 73 58 chr3 111228625 111228762 -116295816 + MER51D LTR ERV1 500 638 -19 5669 127 23 30 chr3 111228849 111229603 -116294975 + L1MA4A LINE L1 5300 6047 -256 1844 155 10 10 chr3 111229603 111229899 -116294679 + AluSq SINE Alu 1 296 -17 5669 127 23 30 chr3 111229899 111230144 -116294434 + L1MA4A LINE L1 6047 6292 -11 957 171 5 21 chr3 111231113 111231306 -116293272 - L1MB8 LINE L1 -1 6177 5988 8117 184 33 19 chr3 111231393 111231661 -116292917 - L1MA6 LINE L1 -238 6062 5799 309 51 0 0 chr3 111231661 111231700 -116292878 + (TG)n Simple_repeat Simple_repeat 2 40 0 8117 184 33 19 chr3 111231700 111233835 -116290743 - L1MA6 LINE L1 -501 5799 3631 1045 232 61 9 chr3 111233830 111234158 -116290420 - L1MC3 LINE L1 -1624 6161 5817 * 321 231 0 77 chr3 111234171 111234262 -116290316 - Tigger7 DNA MER2_type -22 2465 2382 * 2267 200 57 28 chr3 111234247 111234742 -116289836 - Tigger7 DNA MER2_type -224 509 1 741 274 91 6 chr3 111234798 111235160 -116289418 - L1M4 LINE L1 -3604 3040 2648 23 0 0 0 chr3 111235289 111235312 -116289266 + AT_rich Low_complexity Low_complexity 1 23 0 4454 214 10 30 chr3 111235333 111236565 -116288013 - L1MA10 LINE L1 -2 6332 5133 * 6369 212 29 40 chr3 111236553 111237221 -116287357 - L1MA10 LINE L1 -1258 4888 4214 1980 140 0 0 chr3 111237221 111237507 -116287071 - AluSx SINE Alu -26 286 1 6369 212 29 40 chr3 111237507 111238539 -116286039 - L1MA10 LINE L1 -1932 4214 3206 328 306 6 77 chr3 111238542 111238712 -116285866 - L1MC5 LINE L1 -1168 6793 6636 1594 251 72 79 chr3 111238855 111239381 -116285197 - L1M4 LINE L1 -4543 2103 1575 1420 211 3 26 chr3 111239381 111239685 -116284893 - AluJo SINE Alu -15 297 1 1594 251 72 79 chr3 111239685 111239810 -116284768 - L1M4 LINE L1 -5071 1575 1451 1776 131 12 4 chr3 111239810 111240069 -116284509 + AluSc SINE Alu 37 297 -12 285 29 0 0 chr3 111240069 111240103 -116284475 + (TA)n Simple_repeat Simple_repeat 2 35 0 1594 251 72 79 chr3 111240103 111240483 -116284095 - L1M4 LINE L1 -5193 1453 1077 556 285 70 0 chr3 111240774 111240873 -116283705 - L1M4 LINE L1 -6306 236 145 273 57 0 0 chr3 111240873 111240908 -116283670 + (TG)n Simple_repeat Simple_repeat 1 35 0 556 285 70 0 chr3 111240908 111241008 -116283570 - L1M4 LINE L1 -6397 145 23 504 238 25 41 chr3 111241550 111241672 -116282906 - MLT1I LTR MaLR -248 161 42 387 286 53 8 chr3 111241854 111241987 -116282591 + MER117 DNA MER1_type 2 140 -57 2305 120 14 3 chr3 111243238 111243587 -116280991 - THE1A LTR MaLR 0 355 3 10128 139 6 31 chr3 111243589 111245209 -116279369 - THE1A-int LTR MaLR 0 1580 1 2590 107 3 0 chr3 111245209 111245563 -116279015 - THE1A LTR MaLR 0 355 1 379 318 92 56 chr3 111245858 111246185 -116278393 - MLT1G LTR MaLR -84 506 169 359 175 21 56 chr3 111246194 111246337 -116278241 + (TATAA)n Simple_repeat Simple_repeat 2 139 0 293 370 9 0 chr3 111246343 111246451 -116278127 - MLT1G LTR MaLR -403 192 84 186 43 0 0 chr3 111247619 111247642 -116276936 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1181 232 87 85 chr3 111247707 111248202 -116276376 + L1M4 LINE L1 -248 247 -6033 1656 188 68 3 chr3 111248440 111248765 -116275813 + MER7A DNA MER2_type 2 345 -1 500 219 1 101 chr3 111248782 111248952 -116275626 - MLT2D LTR ERVL -40 373 201 1121 270 93 18 chr3 111248973 111249596 -116274982 + L1M4 LINE L1 1173 1773 -4540 1163 117 6 6 chr3 111449609 111449780 -116074798 - AluSp SINE Alu -141 172 2 227 304 32 32 chr3 111450307 111450465 -116074113 + L1ME2 LINE L1 1044 1201 -5341 304 256 60 43 chr3 111450526 111450760 -116073818 + L1ME2 LINE L1 1418 1655 -4979 454 272 120 57 chr3 111450795 111451078 -116073500 + L1ME2 LINE L1 1487 1787 -4857 361 325 46 4 chr3 111451151 111451388 -116073190 + L1ME2 LINE L1 2001 2247 -4578 863 261 89 55 chr3 111451401 111451904 -116072674 + L1ME2 LINE L1 2305 2789 -3855 1593 212 0 3 chr3 111451904 111452187 -116072391 + AluJb SINE Alu 14 295 -17 863 261 89 55 chr3 111452187 111452699 -116071879 + L1ME2 LINE L1 2789 3338 -3306 2490 204 119 29 chr3 111452713 111453815 -116070763 + L1ME2 LINE L1 5453 6653 -9 * 3108 279 75 39 chr3 111453811 111454938 -116069640 + L1ME3A LINE L1 3297 4382 -2262 6195 88 11 1 chr3 111454938 111456226 -116068352 + L1PA12 LINE L1 4856 6167 -1 3108 279 75 39 chr3 111456226 111456702 -116067876 + L1ME3A LINE L1 4382 4839 -1805 1924 141 10 7 chr3 111456702 111457032 -116067546 + AluSx SINE Alu 1 312 0 3108 279 75 39 chr3 111457032 111457764 -116066814 + L1ME3A LINE L1 4839 5717 -927 1427 263 79 31 chr3 111457770 111458569 -116066009 + L1ME3A LINE L1 5764 6644 -24 298 306 40 16 chr3 111458656 111458780 -116065798 - MIR SINE MIR -55 207 81 24 0 0 0 chr3 111458922 111458946 -116065632 + AT_rich Low_complexity Low_complexity 1 24 0 1702 173 0 47 chr3 111459548 111459866 -116064712 - AluJb SINE Alu -9 303 1 355 302 175 0 chr3 111460727 111460853 -116063725 - MIR SINE MIR -112 150 3 2301 104 3 3 chr3 111461242 111461550 -116063028 + AluSg SINE Alu 1 308 -2 1821 155 27 14 chr3 111461565 111461861 -116062717 + AluSx SINE Alu 1 300 -12 396 174 12 0 chr3 111461888 111461974 -116062604 + L1MB7 LINE L1 6089 6175 -9 2213 121 0 0 chr3 111462545 111462850 -116061728 - AluSc SINE Alu -4 305 1 3590 161 48 4 chr3 111462875 111463480 -116061098 - L1 LINE L1 -1316 4830 4183 2128 150 0 0 chr3 111463480 111463780 -116060798 - AluSx SINE Alu -12 300 1 3590 161 48 4 chr3 111463780 111463937 -116060641 - L1 LINE L1 -1963 4183 4034 621 154 8 43 chr3 111463937 111464054 -116060524 + MER44D DNA MER2_type 1 383 -226 4936 130 84 21 chr3 111464055 111465010 -116059568 + L1MA8 LINE L1 5265 6279 -12 379 314 70 12 chr3 111465718 111465890 -116058688 - MIR SINE MIR -64 198 17 2299 56 0 85 chr3 111465978 111466318 -116058260 + AluY SINE Alu 1 311 0 1912 118 66 0 chr3 111466342 111466629 -116057949 + AluSx SINE Alu 1 306 -6 21 75 0 15 chr3 111466700 111466744 -116057834 + AT_rich Low_complexity Low_complexity 1 45 -21 1199 100 0 0 chr3 111466744 111466914 -116057664 + L1MA1 LINE L1 6129 6298 -4 21 75 0 15 chr3 111466914 111466936 -116057642 + AT_rich Low_complexity Low_complexity 45 66 0 246 280 19 56 chr3 111467262 111467369 -116057209 - MIR3 SINE MIR -19 189 87 1712 154 0 26 chr3 111467526 111467799 -116056779 + AluJo SINE Alu 1 266 -46 539 206 23 6 chr3 111467823 111467998 -116056580 + GA-rich Low_complexity Low_complexity 1 178 0 352 219 85 12 chr3 111473021 111473103 -116051475 - L2 LINE L2 -35 3237 3150 249 107 250 0 chr3 111473334 111473390 -116051188 - L1P LINE L1 -738 5428 5359 642 208 29 72 chr3 111473535 111473607 -116050971 + Charlie2 DNA MER1_type 2593 2667 -195 1710 175 35 3 chr3 111473607 111473893 -116050685 + AluJo SINE Alu 1 295 -17 2071 107 0 0 chr3 111473895 111474175 -116050403 + AluSx SINE Alu 1 280 -32 288 0 0 0 chr3 111474180 111474212 -116050366 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 642 208 29 72 chr3 111474212 111474409 -116050169 + Charlie2 DNA MER1_type 2672 2859 -3 23 0 0 0 chr3 111474568 111474591 -116049987 + AT_rich Low_complexity Low_complexity 1 23 0 2074 250 60 15 chr3 111474828 111475438 -116049140 - MER99 DNA DNA -130 698 54 2194 120 0 0 chr3 111475438 111475739 -116048839 - AluSx SINE Alu -11 301 1 2074 250 60 15 chr3 111475739 111475795 -116048783 - MER99 DNA DNA -774 54 2 25853 95 11 2 chr3 111476057 111480919 -116043659 + L1PA7 LINE L1 1556 6462 -7 310 244 22 22 chr3 111480922 111481012 -116043566 - L1MC4 LINE L1 -1339 6703 6614 269 231 11 22 chr3 111481018 111481109 -116043469 + L1MC4 LINE L1 6615 6704 -1338 308 300 0 11 chr3 111481118 111481208 -116043370 + L1MC4 LINE L1 6616 6704 -1338 230 180 0 16 chr3 111481229 111481290 -116043288 + (TTAA)n Simple_repeat Simple_repeat 4 63 0 578 222 11 11 chr3 111481290 111481470 -116043108 + (TA)n Simple_repeat Simple_repeat 1 180 0 307 311 0 0 chr3 111481502 111481592 -116042986 + L1MC4 LINE L1 6614 6703 -1339 420 138 66 10 chr3 111481593 111482099 -116042479 + (TA)n Simple_repeat Simple_repeat 1 534 0 519 130 56 0 chr3 111482148 111482439 -116042139 + (TA)n Simple_repeat Simple_repeat 1 307 0 23 33 0 0 chr3 111482483 111482513 -116042065 + AT_rich Low_complexity Low_complexity 1 30 0 2013 119 3 13 chr3 111482865 111483175 -116041403 - AluSc SINE Alu -2 307 1 1080 101 47 0 chr3 111483176 111483324 -116041254 - AluSq SINE Alu -21 292 138 198 91 0 0 chr3 111483325 111483358 -116041220 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 249 157 0 0 chr3 111483422 111483456 -116041122 + A-rich Low_complexity Low_complexity 1 37 -14 2116 131 0 13 chr3 111483456 111483796 -116040782 + AluSx SINE Alu 1 312 0 249 157 0 0 chr3 111483796 111483812 -116040766 + A-rich Low_complexity Low_complexity 36 51 0 1660 180 28 7 chr3 111483829 111484118 -116040460 + AluJo SINE Alu 1 295 -17 510 276 95 13 chr3 111484154 111484358 -116040220 - MIR SINE MIR -12 250 31 2420 36 4 0 chr3 111484460 111484768 -116039810 + AluY SINE Alu 1 309 0 214 171 0 0 chr3 111485204 111485239 -116039339 + (TATATG)n Simple_repeat Simple_repeat 2 36 0 1982 138 17 0 chr3 111485342 111485638 -116038940 + AluSx SINE Alu 1 301 -11 408 285 52 35 chr3 111486708 111486880 -116037698 + MIR SINE MIR 18 192 -70 207 0 0 0 chr3 111486979 111487002 -116037576 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1437 145 4 0 chr3 111487012 111487240 -116037338 - MER4A LTR ERV1 0 664 436 1329 236 44 19 chr3 111487404 111487741 -116036837 + MLT2D LTR ERVL 1 334 -63 496 29 29 0 chr3 111487741 111487811 -116036767 + (TCTA)n Simple_repeat Simple_repeat 1 72 0 1329 236 44 19 chr3 111487811 111487852 -116036726 + MLT2D LTR ERVL 334 373 -24 601 244 38 25 chr3 111488066 111488226 -116036352 + MIR SINE MIR 32 193 -69 1965 94 45 28 chr3 111488270 111488558 -116036020 + AluSx SINE Alu 1 293 -19 641 276 47 21 chr3 111489170 111489362 -116035216 - MIR SINE MIR -34 228 32 1382 231 43 18 chr3 111489576 111489617 -116034961 - MLT2D LTR ERVL -24 373 334 599 0 14 0 chr3 111489617 111489688 -116034890 + (TAGA)n Simple_repeat Simple_repeat 1 72 0 1382 231 43 18 chr3 111489688 111490025 -116034553 - MLT2D LTR ERVL -63 334 1 866 247 136 33 chr3 111490618 111491111 -116033467 + Charlie7 DNA MER1_type 29 632 -1980 2091 125 3 0 chr3 111491136 111491424 -116033154 - AluSg SINE Alu -21 289 1 2157 90 0 20 chr3 111491474 111491773 -116032805 + AluSg SINE Alu 5 297 -13 1341 109 0 5 chr3 111492088 111492272 -116032306 + AluSq SINE Alu 1 183 -130 378 0 0 0 chr3 111492421 111492463 -116032115 + (TA)n Simple_repeat Simple_repeat 1 42 0 10562 97 9 13 chr3 111492474 111492909 -116031669 + L1P3 LINE L1 2 437 -6024 315 0 0 0 chr3 111492909 111492944 -116031634 + (TG)n Simple_repeat Simple_repeat 2 36 0 10562 97 9 13 chr3 111492944 111494068 -116030510 + L1P3 LINE L1 437 1555 -4906 673 147 0 0 chr3 111495534 111495636 -116028942 + AluSp/q SINE Alu 195 296 -17 2289 113 0 0 chr3 111495712 111496013 -116028565 - AluSq SINE Alu -12 301 1 2354 95 7 0 chr3 111496419 111496723 -116027855 - AluSg SINE Alu -4 306 1 1678 196 102 52 chr3 111496820 111497299 -116027279 - MLT1D LTR MaLR 0 505 3 1477 161 0 93 chr3 111497962 111498112 -116026466 + AluJb SINE Alu 6 112 -200 2382 109 0 0 chr3 111498112 111498423 -116026155 + AluY SINE Alu 1 311 0 1477 161 0 93 chr3 111498423 111498595 -116025983 + AluJb SINE Alu 112 298 -14 216 97 0 0 chr3 111498595 111498626 -116025952 + (GGGA)n Simple_repeat Simple_repeat 1 31 0 324 228 20 81 chr3 111498759 111498956 -116025622 + L1M4 LINE L1 4496 4680 -1466 248 236 42 28 chr3 111499625 111499697 -116024881 - MLT1H LTR MaLR -410 139 67 2329 88 0 46 chr3 111499932 111500260 -116024318 - AluSp SINE Alu 0 313 1 2369 99 0 0 chr3 111500394 111500697 -116023881 + AluSq SINE Alu 1 303 -10 181 269 34 76 chr3 111500877 111500996 -116023582 - L2 LINE L2 -2533 781 668 550 272 0 0 chr3 111501107 111501221 -116023357 - MER81 DNA DNA 0 114 1 1252 167 28 37 chr3 111501629 111501845 -116022733 + MER20 DNA MER1_type 6 219 0 181 291 139 0 chr3 111502252 111502331 -116022247 - L2 LINE L2 0 3272 3183 182 376 6 62 chr3 111502413 111502575 -116022003 - L2 LINE L2 -224 3048 2896 214 260 0 0 chr3 111503156 111503206 -116021372 + L2 LINE L2 3263 3312 -1 2109 108 3 23 chr3 111503441 111503746 -116020832 + AluSp SINE Alu 1 299 -14 235 261 31 0 chr3 111503768 111503833 -116020745 + MIR SINE MIR 195 261 -1 913 108 39 8 chr3 111504245 111504374 -116020204 + FLAM_C SINE Alu 1 133 0 204 226 0 0 chr3 111504380 111504433 -116020145 + A-rich Low_complexity Low_complexity 1 53 0 5656 60 35 10 chr3 111504448 111505152 -116019426 - LTR30 LTR ERV1 0 722 1 189 132 0 0 chr3 111505384 111505422 -116019156 + (A)n Simple_repeat Simple_repeat 1 38 0 186 118 0 0 chr3 111506270 111506304 -116018274 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 402 273 0 0 chr3 111506578 111506677 -116017901 - MIR SINE MIR -51 211 113 380 233 25 58 chr3 111506744 111506864 -116017714 - MER5A DNA MER1_type -33 156 41 2051 139 10 0 chr3 111507021 111507323 -116017255 - AluSx SINE Alu -7 305 1 339 332 44 28 chr3 111507369 111507561 -116017017 + L2 LINE L2 2012 3109 -204 2306 100 0 0 chr3 111507979 111508278 -116016300 - AluY SINE Alu -12 299 1 230 321 12 48 chr3 111508435 111508519 -116016059 + MIR3 SINE MIR 92 172 -36 1068 299 19 27 chr3 111508777 111509148 -116015430 + L2 LINE L2 2560 2927 -387 1863 158 107 43 chr3 111509161 111509631 -116014947 - LTR10A LTR ERV1 -61 548 1 2252 208 49 31 chr3 111509705 111510253 -116014325 - MER74A LTR ERVL 0 558 1 1117 230 85 72 chr3 111511527 111511725 -116012853 - MLT1L LTR MaLR -113 502 308 1970 153 13 0 chr3 111511725 111512032 -116012546 - AluJb SINE Alu -1 311 1 1117 230 85 72 chr3 111512032 111512316 -116012262 - MLT1L LTR MaLR -307 308 14 1834 136 3 34 chr3 111512563 111512721 -116011857 - AluSx SINE Alu -26 286 140 2192 79 14 17 chr3 111512721 111513057 -116011521 - AluY SINE Alu 0 311 1 1834 136 3 34 chr3 111513057 111513193 -116011385 - AluSx SINE Alu -172 140 1 599 340 46 4 chr3 111513442 111513683 -116010895 - MIR SINE MIR -8 254 4 204 306 0 0 chr3 111513752 111513801 -116010777 + L2 LINE L2 3224 3272 0 2361 108 0 3 chr3 111513898 111514204 -116010374 - AluSx SINE Alu -6 306 2 2072 153 42 125 chr3 111514269 111514797 -116009781 + MLT1D LTR MaLR 22 505 0 2092 108 0 14 chr3 111515055 111515352 -116009226 - AluSq SINE Alu -20 293 1 1268 133 53 67 chr3 111515380 111515605 -116008973 + AluJo SINE Alu 4 225 -87 543 311 15 0 chr3 111516033 111516165 -116008413 + MER5A DNA MER1_type 4 137 -52 1802 192 56 0 chr3 111516495 111516834 -116007744 + MLT1A1 LTR MaLR 1 358 -7 331 271 83 10 chr3 111516839 111516935 -116007643 + L2 LINE L2 3155 3257 -15 2281 114 7 0 chr3 111517384 111517690 -116006888 + AluSx SINE Alu 1 308 -4 895 236 99 0 chr3 111517793 111517913 -116006665 + AluJo SINE Alu 1 108 -204 192 97 0 0 chr3 111517913 111517944 -116006634 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 * 288 111 0 0 chr3 111517943 111517988 -116006590 + (TAGA)n Simple_repeat Simple_repeat 2 46 0 895 236 99 0 chr3 111517944 111518100 -116006478 + AluJo SINE Alu 108 256 -56 233 275 0 0 chr3 111518371 111518440 -116006138 + MER103 DNA DNA 36 104 -62 2183 97 3 0 chr3 111519094 111519383 -116005195 - AluSg SINE Alu -20 290 1 1545 172 26 36 chr3 111520019 111520327 -116004251 + AluJo SINE Alu 1 305 -7 208 143 0 0 chr3 111520340 111520375 -116004203 + (GA)n Simple_repeat Simple_repeat 1 35 0 374 184 0 40 chr3 111520426 111520502 -116004076 + L2 LINE L2 3241 3313 0 194 327 152 23 chr3 111520545 111520762 -116003816 - L2 LINE L2 -830 2484 2240 1354 214 73 48 chr3 111521605 111521960 -116002618 - MLT1A1 LTR MaLR -1 364 1 466 284 50 0 chr3 111522506 111522647 -116001931 + MIR SINE MIR 59 206 -56 314 311 45 40 chr3 111523929 111523957 -116000621 - L1 LINE L1 -754 5392 5366 2334 107 0 0 chr3 111523957 111524267 -116000311 - AluSx SINE Alu -2 310 1 314 311 45 40 chr3 111524267 111524415 -116000163 - L1 LINE L1 -780 5366 5215 2415 91 3 0 chr3 111524850 111525159 -115999419 - AluSg SINE Alu 0 310 1 23 33 0 0 chr3 111525450 111525480 -115999098 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 111526146 111526168 -115998410 + AT_rich Low_complexity Low_complexity 1 22 0 373 278 53 24 chr3 111526520 111526689 -115997889 - MIR SINE MIR -37 225 52 1936 91 60 0 chr3 111527067 111527359 -115997219 - AluSg SINE Alu 0 308 1 1976 126 0 0 chr3 111527438 111527708 -115996870 + AluSx SINE Alu 33 302 -10 215 286 44 33 chr3 111530991 111531082 -115993496 - MIR SINE MIR -52 210 119 326 289 33 72 chr3 111532544 111532696 -115991882 - L2 LINE L2 -10 3303 3158 2111 133 0 7 chr3 111532938 111533240 -115991338 - AluSx SINE Alu -12 300 1 180 77 0 0 chr3 111533248 111533274 -115991304 + (TC)n Simple_repeat Simple_repeat 1 26 0 4054 211 23 11 chr3 111533623 111533785 -115990793 + L1P LINE L1 2232 2391 -3755 2207 133 76 59 chr3 111533785 111534160 -115990418 + MSTA LTR MaLR 1 385 -43 1712 188 3 13 chr3 111534160 111534463 -115990115 - AluJo SINE Alu -8 304 5 2207 133 76 59 chr3 111534463 111534508 -115990070 + MSTA LTR MaLR 385 428 0 4054 211 23 11 chr3 111534508 111535276 -115989302 + L1P LINE L1 2391 3173 -2973 21 0 0 0 chr3 111535889 111535910 -115988668 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr3 111536118 111536139 -115988439 + (T)n Simple_repeat Simple_repeat 1 21 0 391 348 69 10 chr3 111536436 111536640 -115987938 + MIR SINE MIR 37 252 -10 327 104 0 0 chr3 111536943 111536991 -115987587 + (TG)n Simple_repeat Simple_repeat 2 49 0 271 294 22 86 chr3 111537312 111537543 -115987035 - L2 LINE L2 -275 2997 2770 2275 109 3 6 chr3 111538580 111538892 -115985686 - AluSp SINE Alu -2 311 1 1838 153 3 40 chr3 111538893 111539214 -115985364 - AluJb SINE Alu -3 309 1 22 0 0 0 chr3 111539215 111539237 -115985341 + AT_rich Low_complexity Low_complexity 1 22 0 903 272 4 4 chr3 111539446 111539678 -115984900 - L1ME3A LINE L1 -5 6165 5934 2359 149 76 38 chr3 111539769 111540219 -115984359 + MLT1C LTR MaLR 1 467 0 2246 104 0 25 chr3 111540907 111541224 -115983354 - AluSx SINE Alu 0 312 4 21 0 0 0 chr3 111541676 111541697 -115982881 + AT_rich Low_complexity Low_complexity 1 21 0 373 109 0 50 chr3 111541913 111542014 -115982564 + (TGGA)n Simple_repeat Simple_repeat 3 98 0 40 37 0 0 chr3 111542574 111542628 -115981950 + AT_rich Low_complexity Low_complexity 1 54 0 388 244 87 0 chr3 111542628 111542743 -115981835 - L1MA4 LINE L1 -4 6296 6172 739 310 71 4 chr3 111544106 111544345 -115980233 + MIR SINE MIR 8 262 0 2254 97 3 3 chr3 111544348 111544659 -115979919 - AluSx SINE Alu -1 311 1 484 305 207 46 chr3 111544681 111545029 -115979549 + L2 LINE L2 2868 3271 -1 393 254 130 107 chr3 111546418 111546595 -115977983 + MER5A DNA MER1_type 9 189 0 395 325 42 29 chr3 111546646 111546886 -115977692 - L3 LINE CR1 -146 1431 1189 1079 138 0 6 chr3 111546936 111547095 -115977483 - AluSg/x SINE Alu -16 296 139 208 227 45 0 chr3 111547100 111547144 -115977434 + L3 LINE CR1 1526 1571 -6 708 186 215 0 chr3 111547518 111547690 -115976888 + MER6B DNA MER2_type 1 209 -1 22 0 0 0 chr3 111547899 111547921 -115976657 + AT_rich Low_complexity Low_complexity 1 22 0 979 163 25 0 chr3 111547944 111548104 -115976474 - MER34 LTR ERV1 -12 530 367 6404 140 50 43 chr3 111548119 111548355 -115976223 + Tigger1 DNA MER2_type 26 259 -2159 2508 65 0 0 chr3 111548355 111548661 -115975917 - AluY SINE Alu -5 306 1 6404 140 50 43 chr3 111548661 111549573 -115975005 + Tigger1 DNA MER2_type 259 1182 -1236 772 144 16 0 chr3 111549573 111549698 -115974880 + FLAM_C SINE Alu 1 127 -16 6412 138 21 29 chr3 111549736 111550923 -115973655 + Tigger1 DNA MER2_type 1241 2418 0 2118 92 4 0 chr3 111550924 111551236 -115973342 - AluY SINE Alu 0 313 1 755 228 11 6 chr3 111551327 111551507 -115973071 - MER34 LTR ERV1 -323 219 39 291 104 21 0 chr3 111551550 111551598 -115972980 - Tigger1 DNA MER2_type -1204 1214 1166 189 74 0 0 chr3 111551624 111551651 -115972927 + (TG)n Simple_repeat Simple_repeat 2 28 0 242 209 0 81 chr3 111551771 111551857 -115972721 + CT-rich Low_complexity Low_complexity 3 81 0 211 308 62 0 chr3 111552784 111552849 -115971729 + MIR SINE MIR 64 132 -76 675 285 56 5 chr3 111553504 111553718 -115970860 + MIR SINE MIR 28 252 -10 2275 88 3 13 chr3 111553724 111554030 -115970548 - AluSx SINE Alu -9 303 1 651 321 71 18 chr3 111554720 111554944 -115969634 - MIR SINE MIR -20 242 7 192 320 6 126 chr3 111555451 111555626 -115968952 + MIR SINE MIR 55 208 0 530 230 17 22 chr3 111556127 111556282 -115968296 - MER5A DNA MER1_type -32 157 4 1551 219 24 33 chr3 111556612 111557037 -115967541 + L1ME1 LINE L1 5656 6076 -90 670 146 0 0 chr3 111557083 111557186 -115967392 + FLAM_A SINE Alu 29 131 -11 2294 107 0 7 chr3 111557217 111557517 -115967061 + AluSx SINE Alu 1 298 -14 23 54 0 0 chr3 111558555 111558592 -115965986 + AT_rich Low_complexity Low_complexity 1 37 0 197 224 35 17 chr3 111558756 111558814 -115965764 + MIR SINE MIR 204 262 0 250 279 103 61 chr3 111559299 111559464 -115965114 + MER91A DNA MER1_type 1 172 -24 21 0 0 0 chr3 111559618 111559639 -115964939 + AT_rich Low_complexity Low_complexity 1 21 0 277 127 0 95 chr3 111560029 111560092 -115964486 + MADE1 DNA Mariner 24 80 0 450 318 61 21 chr3 111560507 111560720 -115963858 + MIR SINE MIR 26 243 -19 192 219 0 0 chr3 111560748 111560780 -115963798 - MIR SINE MIR -13 249 218 404 272 105 37 chr3 111560884 111561046 -115963532 - MER5A DNA MER1_type 0 189 17 234 282 69 46 chr3 111561234 111561365 -115963213 + MIR SINE MIR 73 206 -56 2229 106 0 7 chr3 111562288 111562589 -115961989 - AluSg1 SINE Alu -10 299 1 266 314 58 25 chr3 111562731 111562852 -115961726 - MIR3 SINE MIR -71 137 13 599 236 144 13 chr3 111567695 111567924 -115956654 + MER112 DNA MER1_type 2 260 0 28 0 0 0 chr3 111568530 111568558 -115956020 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr3 111569412 111569442 -115955136 + AT_rich Low_complexity Low_complexity 1 30 0 248 311 33 0 chr3 111570976 111571037 -115953541 - MIR SINE MIR -173 89 27 2258 88 7 7 chr3 111571064 111571361 -115953217 + AluSg SINE Alu 1 297 -13 1059 256 50 84 chr3 111572755 111573108 -115951470 - MLT1J LTR MaLR -4 507 176 772 194 55 88 chr3 111573108 111573325 -115951253 - MER63A DNA MER1_type 0 210 1 1059 256 50 84 chr3 111573325 111573494 -115951084 - MLT1J LTR MaLR -335 176 3 303 311 25 8 chr3 111574546 111574665 -115949913 - MIR SINE MIR -58 150 30 361 296 53 8 chr3 111574807 111574939 -115949639 + MER91C DNA MER1_type 3 140 0 374 298 25 0 chr3 111575118 111575239 -115949339 - MLT1L LTR MaLR -342 273 150 4148 47 0 45 chr3 111576805 111577362 -115947216 + L1PA7 LINE L1 5622 6153 -1 23 54 0 0 chr3 111579686 111579723 -115944855 + AT_rich Low_complexity Low_complexity 1 37 0 390 299 64 25 chr3 111580440 111580644 -115943934 + MIR SINE MIR 48 259 -3 2801 310 91 27 chr3 111581078 111582661 -115941917 - L2 LINE L2 -2 3311 1608 236 352 101 25 chr3 111582694 111582825 -115941753 - L2 LINE L2 -1808 1506 1360 234 0 0 0 chr3 111582825 111582851 -115941727 + (TG)n Simple_repeat Simple_repeat 2 27 0 236 352 101 25 chr3 111582851 111582878 -115941700 - L2 LINE L2 -1954 1360 1336 185 245 57 19 chr3 111583745 111583798 -115940780 + L3 LINE CR1 1266 1320 -257 334 250 58 29 chr3 111585372 111585544 -115939034 - L1ME LINE L1 -346 5775 5599 1593 319 136 22 chr3 111585757 111586736 -115937842 - L2 LINE L2 -1272 2042 953 1848 125 16 36 chr3 111588378 111588682 -115935896 - AluSx SINE Alu -14 298 1 1919 112 7 36 chr3 111590473 111590777 -115933801 + AluSx SINE Alu 1 295 -17 1381 93 4 49 chr3 111591473 111591699 -115932879 + L1PA16 LINE L1 5942 6157 -9 201 39 0 0 chr3 111592118 111592144 -115932434 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr3 111592903 111592924 -115931654 + AT_rich Low_complexity Low_complexity 1 21 0 22040 38 5 0 chr3 111597567 111600844 -115923734 - L1PA5 LINE L1 -145 6009 2718 964 47 0 0 chr3 111600844 111600951 -115923627 - U6 snRNA snRNA 0 107 1 212 247 135 22 chr3 111601762 111601851 -115922727 + MIR SINE MIR 8 106 -156 437 227 84 0 chr3 111601885 111602004 -115922574 + MIR SINE MIR 92 220 -42 256 259 0 59 chr3 111602493 111602578 -115922000 + L2 LINE L2 3192 3271 -1 426 336 138 23 chr3 111602596 111603037 -115921541 + L2 LINE L2 2367 2858 -456 1856 189 57 14 chr3 111603133 111603483 -115921095 + MLT1A1 LTR MaLR 1 365 0 189 325 0 62 chr3 111603702 111603782 -115920796 + L2 LINE L2 3190 3264 -8 241 309 18 36 chr3 111604173 111604283 -115920295 + L1MC5 LINE L1 7816 7923 -38 569 253 159 53 chr3 111604389 111604865 -115919713 + L1ME4a LINE L1 5298 5826 -295 363 219 67 57 chr3 111604971 111605076 -115919502 - MIR3 SINE MIR -17 191 86 197 294 170 49 chr3 111605227 111605533 -115919045 - L2 LINE L2 -1661 1653 1311 22 70 0 0 chr3 111607438 111607481 -115917097 + AT_rich Low_complexity Low_complexity 1 43 0 360 229 0 12 chr3 111607729 111607812 -115916766 - L2 LINE L2 0 3313 3232 30 0 0 0 chr3 111608699 111608729 -115915849 + AT_rich Low_complexity Low_complexity 1 30 0 1465 158 24 57 chr3 111608970 111609133 -115915445 - AluJo SINE Alu -24 288 138 1750 140 87 0 chr3 111609133 111609398 -115915180 - AluSx SINE Alu -22 290 3 1465 158 24 57 chr3 111609398 111609532 -115915046 - AluJo SINE Alu -174 138 1 216 333 0 0 chr3 111609752 111609806 -115914772 - MIR SINE MIR -117 91 38 188 381 41 21 chr3 111610306 111610403 -115914175 - L2 LINE L2 -16 3256 3158 3628 234 83 58 chr3 111610723 111612208 -115912370 + L1MEc LINE L1 136 1658 -4738 1747 138 57 18 chr3 111612649 111612932 -115911646 - AluJo SINE Alu -16 296 3 2192 133 80 38 chr3 111614368 111614882 -115909696 + MLT2A2 LTR ERVL 1 554 0 674 280 113 48 chr3 111615527 111615863 -115908715 + L2 LINE L2 2952 3309 -4 194 292 101 34 chr3 111615988 111616077 -115908501 + MIR SINE MIR 158 252 -10 21 0 0 0 chr3 111616077 111616098 -115908480 + AT_rich Low_complexity Low_complexity 1 21 0 469 181 150 1 chr3 111616889 111617059 -115907519 + MER58C DNA MER1_type 1 215 0 2215 103 0 3 chr3 111617631 111617933 -115906645 + AluSg SINE Alu 1 301 -9 2147 119 0 0 chr3 111618744 111619038 -115905540 - AluSq SINE Alu -19 294 1 262 296 12 0 chr3 111619208 111619289 -115905289 - L1MC/D LINE L1 -1993 5815 5734 462 208 92 92 chr3 111619322 111619529 -115905049 - L2 LINE L2 -3 3310 3104 395 233 340 19 chr3 111619585 111619744 -115904834 - MIR SINE MIR -34 228 19 714 303 59 32 chr3 111619851 111620260 -115904318 - L2 LINE L2 -339 2975 2556 561 88 0 0 chr3 111621488 111621568 -115903010 + (TA)n Simple_repeat Simple_repeat 2 81 0 626 244 57 34 chr3 111621752 111621928 -115902650 + MER5A DNA MER1_type 10 189 0 310 290 100 35 chr3 111622160 111622360 -115902218 + L2 LINE L2 2857 3069 -203 228 305 105 21 chr3 111622517 111622612 -115901966 + L2 LINE L2 3170 3272 0 2631 206 70 20 chr3 111623772 111624966 -115899612 + L1MC4 LINE L1 4799 5403 -743 1967 151 18 41 chr3 111624637 111625028 -115899550 + L1MB8 LINE L1 5739 6120 -58 * 919 115 39 0 chr3 111625049 111625179 -115899399 - L1PA16 LINE L1 -9 6157 6023 * 5608 192 8 2 chr3 111625173 111626957 -115897621 - L1PA13 LINE L1 -1 7600 5759 1593 114 117 60 chr3 111626957 111627238 -115897340 - AluSx SINE Alu -15 297 1 8007 222 26 9 chr3 111627242 111629442 -115895136 - L1PA13 LINE L1 -2885 4699 2471 1181 315 15 10 chr3 111629514 111629924 -115894654 - L1PA13 LINE L1 -5936 1645 1234 604 178 0 0 chr3 111629925 111630032 -115894546 - L1PA13 LINE L1 -7349 232 126 3771 150 21 2 chr3 111630054 111630674 -115893904 - L1MA4 LINE L1 -4 6296 5665 2263 112 3 0 chr3 111630853 111631156 -115893422 - AluSx SINE Alu -7 305 2 244 154 19 39 chr3 111631348 111631400 -115893178 - L2 LINE L2 0 3313 3263 2271 117 3 0 chr3 111631426 111631734 -115892844 - AluSq SINE Alu -4 309 1 390 91 0 0 chr3 111631788 111631843 -115892735 + (TTTC)n Simple_repeat Simple_repeat 2 56 0 219 69 0 0 chr3 111631944 111631973 -115892605 + (TG)n Simple_repeat Simple_repeat 2 30 0 287 255 66 28 chr3 111631973 111632079 -115892499 - L1MEc LINE L1 -4494 1902 1793 328 223 39 46 chr3 111632106 111632236 -115892342 - L1MEc LINE L1 -6233 163 35 2804 86 54 56 chr3 111632351 111632941 -115891637 - SVA Other Other -367 1019 431 994 210 22 26 chr3 111633004 111633276 -115891302 - SVA Other Other -520 866 596 1526 88 20 102 chr3 111633407 111634114 -115890464 - SVA Other Other -518 868 432 5378 78 29 65 chr3 111634128 111636217 -115888361 - SVA Other Other -518 868 58 261 0 0 0 chr3 111636218 111636247 -115888331 + (GGGAGA)n Simple_repeat Simple_repeat 1 29 0 415 21 0 0 chr3 111636247 111636295 -115888283 + SVA Other Other 1040 1087 -299 275 111 0 0 chr3 111636295 111636495 -115888083 - Alu SINE Alu 0 442 243 728 183 23 0 chr3 111636495 111636626 -115887952 - L1PA12 LINE L1 -7442 139 6 365 188 0 0 chr3 111636629 111636698 -115887880 + L1MB7 LINE L1 6108 6176 -8 671 326 84 39 chr3 111636807 111637248 -115887330 - L2 LINE L2 0 3313 2853 778 322 75 0 chr3 111637287 111637579 -115886999 - L2 LINE L2 -587 2727 2414 1303 204 26 8 chr3 111637717 111637981 -115886597 - AluJo SINE Alu -40 272 4 2246 88 0 10 chr3 111638973 111639267 -115885311 + AluY SINE Alu 1 291 -20 261 0 0 0 chr3 111641227 111641256 -115883322 + (CA)n Simple_repeat Simple_repeat 1 29 0 2067 121 0 17 chr3 111641536 111641855 -115882723 - AluSq SINE Alu 0 314 1 445 327 101 57 chr3 111642693 111643295 -115881283 + L2 LINE L2 2595 3226 -46 194 250 0 17 chr3 111644462 111644522 -115880056 - MIR SINE MIR -90 118 60 4799 94 29 6 chr3 111645168 111645824 -115878754 - L1PA13 LINE L1 0 6163 5493 31 76 0 0 chr3 111646014 111646080 -115878498 + AT_rich Low_complexity Low_complexity 1 66 0 2366 88 3 0 chr3 111646080 111646376 -115878202 + AluSp SINE Alu 1 297 -16 340 294 51 62 chr3 111647264 111647409 -115877169 + L2 LINE L2 2174 2318 -996 1418 110 25 86 chr3 111647409 111647654 -115876924 + MER30 DNA MER1_type 1 230 0 340 294 51 62 chr3 111647654 111647685 -115876893 + L2 LINE L2 2318 2348 -966 409 286 32 32 chr3 111647748 111647902 -115876676 - MARNA DNA Mariner -352 234 81 600 201 77 64 chr3 111647904 111648162 -115876416 + L1ME LINE L1 4222 4477 -1669 * 8274 81 16 3 chr3 111648131 111649298 -115875280 + L1P LINE L1 3983 5164 -982 2283 100 7 0 chr3 111649438 111649739 -115874839 - AluSx SINE Alu -9 303 1 1471 250 51 51 chr3 111649814 111650282 -115874296 + MLT1E3 LTR MaLR 157 624 0 598 269 61 53 chr3 111650430 111650694 -115873884 + Charlie8 DNA MER1_type 63 328 -2089 282 273 13 0 chr3 111650684 111650761 -115873817 + Charlie8 DNA MER1_type 2339 2416 -1 * 261 275 67 42 chr3 111651252 111651372 -115873206 - L2 LINE L2 -18 3254 3132 924 266 95 16 chr3 111652007 111652679 -115871899 + L1ME LINE L1 4952 5677 -485 23 0 0 0 chr3 111652726 111652749 -115871829 + AT_rich Low_complexity Low_complexity 1 23 0 5661 97 81 89 chr3 111654131 111655681 -115868897 - pTR5 LTR ERV1 0 2438 136 1012 165 56 84 chr3 111655695 111656010 -115868568 + L1MA8 LINE L1 5099 5396 -750 40295 63 19 1 chr3 111656023 111662059 -115862519 + L1PA5 LINE L1 11 6154 0 4575 134 65 14 chr3 111662053 111662895 -115861683 + L1MA8 LINE L1 5385 6269 -22 * 7850 37 8 4 chr3 111662912 111664647 -115859931 - L1PA5 LINE L1 -7 6147 4405 354 295 72 50 chr3 111664674 111664952 -115859626 + HAL1b LINE L1 222 425 -923 2389 84 0 3 chr3 111664987 111665298 -115859280 - AluY SINE Alu -1 310 1 308 100 80 0 chr3 111665599 111665649 -115858929 + MSTB2 LTR MaLR 1 54 -403 6531 192 28 73 chr3 111665658 111666771 -115857807 - L1PB3 LINE L1 0 6154 4993 3167 144 16 0 chr3 111666771 111667277 -115857301 - MER75 DNA T2_type 0 514 1 6531 192 28 73 chr3 111667277 111667679 -115856899 - L1PB3 LINE L1 -1161 4993 4575 569 198 157 0 chr3 111667679 111667800 -115856778 + AluJb SINE Alu 134 273 -39 6531 192 28 73 chr3 111667800 111667839 -115856739 - L1PB3 LINE L1 -1579 4575 4536 1024 106 12 6 chr3 111667839 111668009 -115856569 + (GAAA)n Simple_repeat Simple_repeat 3 173 0 6531 192 28 73 chr3 111668009 111669292 -115855286 - L1PB3 LINE L1 -1618 4536 3345 475 135 14 0 chr3 111669302 111669376 -115855202 - U3 snRNA snRNA -142 75 1 * 1491 211 99 13 chr3 111669375 111669758 -115854820 + MSTB2 LTR MaLR 41 456 -1 364 307 117 40 chr3 111670131 111670781 -115853797 + L1MC4a LINE L1 2210 2943 -3203 413 294 78 11 chr3 111670909 111671089 -115853489 + L1MC4a LINE L1 3105 3296 -2850 901 268 64 40 chr3 111671293 111671811 -115852767 + L1MC4a LINE L1 3441 3970 -2176 1262 191 13 98 chr3 111671825 111672223 -115852355 + MLT1A2 LTR MaLR 4 367 -7 914 306 52 50 chr3 111672231 111673500 -115851078 + L1MC4a LINE L1 4060 5330 -816 732 168 8 0 chr3 111673500 111673619 -115850959 + FLAM_A SINE Alu 12 131 -11 6000 220 110 42 chr3 111673619 111675693 -115848885 + L1MC4a LINE L1 5309 7524 -284 249 224 131 37 chr3 111676382 111676489 -115848089 - L1MC5 LINE L1 -54 7907 7791 276 264 119 64 chr3 111676531 111676638 -115847940 - L1MC5 LINE L1 -240 7721 7621 2053 59 0 4 chr3 111676638 111676892 -115847686 - AluY SINE Alu -15 296 44 276 264 119 64 chr3 111676892 111677144 -115847434 - L1MC5 LINE L1 -340 7621 7342 493 244 65 30 chr3 111677718 111677886 -115846692 - MER5B DNA MER1_type -4 174 1 574 265 219 33 chr3 111677914 111678129 -115846449 - MIR SINE MIR -7 255 1 2023 101 16 47 chr3 111678210 111678528 -115846050 + AluSq SINE Alu 1 308 -5 1146 82 251 0 chr3 111679145 111679364 -115845214 - L1MA5A LINE L1 -2 6295 6022 6038 68 10 11 chr3 111679670 111680467 -115844111 - L1PA6 LINE L1 0 6154 5359 345 183 14 0 chr3 111682731 111682802 -115841776 + MER112 DNA MER1_type 189 260 0 998 179 47 11 chr3 111683065 111683255 -115841323 + MER20 DNA MER1_type 15 211 -8 417 194 93 0 chr3 111684756 111684864 -115839714 - L1M4 LINE L1 -3748 2398 2281 2928 163 18 0 chr3 111684911 111685419 -115839159 - L1MC1 LINE L1 -1 6332 5816 339 326 80 40 chr3 111685648 111685872 -115838706 + MIR SINE MIR 30 262 0 286 293 116 66 chr3 111686061 111686423 -115838155 + L2 LINE L2 751 1130 -2184 892 203 114 78 chr3 111686656 111687094 -115837484 + LTR37B LTR ERV1 7 460 -8 1714 212 74 14 chr3 111687335 111687769 -115836809 + MLT1C LTR MaLR 1 460 -7 215 185 19 19 chr3 111687894 111687948 -115836630 + CT-rich Low_complexity Low_complexity 4 57 0 323 356 69 25 chr3 111688214 111688374 -115836204 - L2 LINE L2 -18 3254 3088 189 154 0 0 chr3 111688388 111688427 -115836151 + (TG)n Simple_repeat Simple_repeat 1 39 0 360 148 0 0 chr3 111688429 111688490 -115836088 + (GA)n Simple_repeat Simple_repeat 2 62 0 189 0 0 0 chr3 111688493 111688514 -115836064 + (CAAG)n Simple_repeat Simple_repeat 2 22 0 530 350 44 22 chr3 111688699 111689078 -115835500 + L2 LINE L2 2616 3002 -270 280 296 113 65 chr3 111689675 111689861 -115834717 + MLT1K LTR MaLR 187 381 -207 266 343 26 89 chr3 111692192 111692463 -115832115 - L2 LINE L2 -212 3060 2807 198 290 97 11 chr3 111694800 111694893 -115829685 - MIR SINE MIR -56 152 52 21 0 0 0 chr3 111695108 111695129 -115829449 + AT_rich Low_complexity Low_complexity 1 21 0 311 211 100 0 chr3 111695453 111695543 -115829035 - L1ME4a LINE L1 -53 6068 5970 23 0 0 0 chr3 111695747 111695770 -115828808 + AT_rich Low_complexity Low_complexity 1 23 0 254 250 95 12 chr3 111695917 111696001 -115828577 - MIR SINE MIR -71 191 101 2295 57 34 3 chr3 111696212 111696509 -115828069 - AluSc SINE Alu -1 308 3 441 264 50 25 chr3 111696677 111696836 -115827742 + MIR SINE MIR 96 258 -4 293 260 10 10 chr3 111698105 111698201 -115826377 + GA-rich Low_complexity Low_complexity 2 97 0 27 29 0 0 chr3 111698201 111698235 -115826343 + GC_rich Low_complexity Low_complexity 1 34 0 29 0 0 0 chr3 111698912 111698941 -115825637 + GC_rich Low_complexity Low_complexity 1 29 0 480 291 100 29 chr3 111699591 111699832 -115824746 - L2 LINE L2 -837 2477 2220 213 178 0 44 chr3 111699834 111699879 -115824699 + (CATA)n Simple_repeat Simple_repeat 1 43 0 193 304 98 54 chr3 111699920 111700032 -115824546 - L3 LINE CR1 -11 1566 1450 * 221 315 131 23 chr3 111700002 111700132 -115824446 - L2 LINE L2 -4 3309 3166 192 314 177 56 chr3 111700355 111700479 -115824099 - L2 LINE L2 -468 2846 2738 2306 74 6 3 chr3 111700479 111700791 -115823787 - AluSp SINE Alu 0 313 1 192 314 177 56 chr3 111700791 111701163 -115823415 - L2 LINE L2 -576 2738 2290 2536 46 0 0 chr3 111702435 111702737 -115821841 + AluY SINE Alu 1 302 -9 2299 70 3 10 chr3 111702737 111703038 -115821540 + AluY SINE Alu 1 299 -12 272 267 0 67 chr3 111704425 111704500 -115820078 + MIR SINE MIR 81 150 -58 26 30 0 0 chr3 111705356 111705389 -115819189 + AT_rich Low_complexity Low_complexity 1 33 0 818 85 9 0 chr3 111705420 111705526 -115819052 + U6 snRNA snRNA 1 107 0 9579 157 19 4 chr3 111705533 111707222 -115817356 + L1PA11 LINE L1 2086 3800 -2346 6619 104 28 4 chr3 111707220 111707929 -115816649 + L1PA11 LINE L1 4651 5342 -832 * 2370 58 0 23 chr3 111707929 111708238 -115816340 + AluY SINE Alu 1 302 -9 6619 104 28 4 chr3 111708238 111709018 -115815560 + L1PA11 LINE L1 5342 6172 -2 1853 165 0 3 chr3 111711754 111712063 -115812515 + AluJb SINE Alu 1 308 -4 271 190 29 29 chr3 111712218 111712355 -115812223 + CT-rich Low_complexity Low_complexity 1 137 0 653 311 50 4 chr3 111712429 111712619 -115811959 - MIR SINE MIR -2 260 55 1948 125 83 14 chr3 111712619 111712970 -115811608 + THE1C LTR MaLR 1 375 0 653 311 50 4 chr3 111712970 111713017 -115811561 - MIR SINE MIR -207 55 12 186 377 140 0 chr3 111713086 111713200 -115811378 - MIR SINE MIR -6 256 127 1341 107 16 0 chr3 111713479 111713666 -115810912 + AluSx SINE Alu 17 206 -106 313 228 22 50 chr3 111716626 111716806 -115807772 + (CACAA)n Simple_repeat Simple_repeat 3 177 0 779 94 80 143 chr3 111717458 111717682 -115806896 - AluSx SINE Alu -100 212 3 2392 72 0 3 chr3 111717914 111718218 -115806360 - AluSc SINE Alu -6 303 1 21 0 0 0 chr3 111718224 111718245 -115806333 + AT_rich Low_complexity Low_complexity 1 21 0 236 241 126 0 chr3 111719080 111719167 -115805411 + MIR SINE MIR 40 137 -125 8482 58 10 4 chr3 111721162 111722258 -115802320 - L1P LINE L1 -1632 4514 3412 2180 92 0 13 chr3 111722370 111722674 -115801904 + AluY SINE Alu 11 310 -1 282 325 8 8 chr3 111727044 111727167 -115797411 + (TG)n Simple_repeat Simple_repeat 2 124 0 401 77 15 31 chr3 111728877 111728942 -115795636 + Alu SINE Alu 2 65 -253 364 201 198 83 chr3 111729192 111729506 -115795072 - L1M2 LINE L1 -5463 1386 1037 1451 196 0 4 chr3 111730714 111730995 -115793583 - AluJo SINE Alu -26 286 7 3149 250 36 49 chr3 111731434 111732709 -115791869 + L1ME1 LINE L1 2905 4163 -1983 14735 223 31 26 chr3 111732721 111733741 -115790837 + L1PA12 LINE L1 8 1022 -6562 1628 65 57 9 chr3 111733741 111733970 -115790608 - AluY SINE Alu -21 290 51 14735 223 31 26 chr3 111733970 111734559 -115790019 + L1PA12 LINE L1 1022 1607 -5977 2757 10 0 0 chr3 111734559 111734868 -115789710 + AluY SINE Alu 1 309 -2 14735 223 31 26 chr3 111734868 111736859 -115787719 + L1PA12 LINE L1 1607 3588 -3996 186 71 0 0 chr3 111736859 111736887 -115787691 + (TTTAA)n Simple_repeat Simple_repeat 3 30 0 7475 29 1 33 chr3 111736896 111738536 -115786042 - L1PA4 LINE L1 -11 6144 4529 14735 223 31 26 chr3 111738536 111739777 -115784801 + L1PA12 LINE L1 3595 5672 -1912 11931 236 21 13 chr3 111739762 111742856 -115781722 + L1PA16 LINE L1 1865 4984 -1162 * 1706 179 0 14 chr3 111742958 111743243 -115781335 + L1PA16 LINE L1 5858 6138 -28 254 182 15 0 chr3 111743244 111743310 -115781268 + GA-rich Low_complexity Low_complexity 2 68 0 2947 200 64 44 chr3 111743321 111744342 -115780236 + L1ME1 LINE L1 5121 6151 -15 194 373 35 7 chr3 111744521 111744663 -115779915 + MIR3 SINE MIR 59 204 -4 193 313 163 0 chr3 111744711 111744791 -115779787 - L3 LINE CR1 -7 1570 1478 23 68 0 0 chr3 111744877 111744921 -115779657 + AT_rich Low_complexity Low_complexity 1 44 0 2543 128 50 9 chr3 111745002 111745463 -115779115 + L1MB2 LINE L1 5690 6169 -2 1367 204 89 55 chr3 111745495 111745949 -115778629 + MLT2B1 LTR ERVL 1 462 -2 419 256 116 58 chr3 111745976 111746148 -115778430 - L1MC/D LINE L1 -517 5604 5468 663 302 93 4 chr3 111746148 111746520 -115778058 + MLT1J LTR MaLR 27 459 -52 2628 37 0 0 chr3 111747069 111747368 -115777210 - AluY SINE Alu -1 310 12 333 214 0 57 chr3 111747368 111747457 -115777121 - MER5A DNA MER1_type -5 184 100 572 286 7 34 chr3 111748338 111748485 -115776093 - MIR3 SINE MIR -25 183 41 21 0 0 0 chr3 111748853 111748874 -115775704 + AT_rich Low_complexity Low_complexity 1 21 0 859 164 0 0 chr3 111749067 111749207 -115775371 - AluSg/x SINE Alu -12 300 161 1567 113 0 0 chr3 111749207 111749410 -115775168 - AluSx SINE Alu -104 208 6 24 53 0 0 chr3 111749423 111749461 -115775117 + AT_rich Low_complexity Low_complexity 1 38 0 381 260 39 18 chr3 111750119 111750255 -115774323 - MIR SINE MIR -65 143 15 2475 153 41 2 chr3 111751059 111751471 -115773107 + MSTA LTR MaLR 1 428 0 15876 165 43 11 chr3 111751998 111753005 -115771573 - L1PBa LINE L1 -2376 4486 3513 2130 118 7 0 chr3 111753005 111753301 -115771277 - AluSg SINE Alu -12 298 1 15876 165 43 11 chr3 111753301 111753689 -115770889 - L1PBa LINE L1 -3349 3513 3139 2000 96 35 54 chr3 111753689 111754002 -115770576 - AluSq SINE Alu 0 313 7 15876 165 43 11 chr3 111754002 111754974 -115769604 - L1PBa LINE L1 -3723 3139 2200 6210 53 11 1 chr3 111754974 111755760 -115768818 + L1PA7 LINE L1 5361 6154 0 15876 165 43 11 chr3 111755760 111757623 -115766955 - L1PBa LINE L1 -4662 2200 117 3034 95 18 18 chr3 111757623 111758025 -115766553 + MLT2A1 LTR ERVL 1 405 -39 233 29 29 0 chr3 111758025 111758059 -115766519 + (TCTA)n Simple_repeat Simple_repeat 2 36 0 3034 95 18 18 chr3 111758059 111758100 -115766478 + MLT2A1 LTR ERVL 404 444 0 15876 165 43 11 chr3 111758100 111758142 -115766436 - L1PBa LINE L1 -6745 117 78 25 31 0 0 chr3 111758536 111758568 -115766010 + AT_rich Low_complexity Low_complexity 1 32 0 36 40 0 0 chr3 111759139 111759189 -115765389 + AT_rich Low_complexity Low_complexity 1 50 0 23 33 0 0 chr3 111760299 111760329 -115764249 + AT_rich Low_complexity Low_complexity 1 30 0 591 226 119 25 chr3 111760600 111760759 -115763819 - MIR SINE MIR -8 254 81 2115 118 0 0 chr3 111760993 111761297 -115763281 + AluSc SINE Alu 1 304 -5 1516 156 0 76 chr3 111761301 111761590 -115762988 + AluJo SINE Alu 1 267 -45 183 156 0 0 chr3 111761615 111761647 -115762931 + CT-rich Low_complexity Low_complexity 3 34 0 23 0 0 0 chr3 111761843 111761866 -115762712 + AT_rich Low_complexity Low_complexity 1 23 0 268 200 0 17 chr3 111762080 111762140 -115762438 + MIR SINE MIR 95 153 -109 334 280 65 69 chr3 111762908 111763070 -115761508 + MIR SINE MIR 17 174 -62 194 321 261 14 chr3 111764545 111764760 -115759818 + L2 LINE L2 2553 2820 -494 1075 189 19 33 chr3 111764763 111764975 -115759603 + MER20 DNA MER1_type 10 218 -1 433 364 60 43 chr3 111765282 111765584 -115758994 + L2 LINE L2 2966 3272 0 297 333 46 95 chr3 111766226 111766838 -115757740 + MLT1K LTR MaLR 5 586 -2 376 320 65 45 chr3 111768299 111768608 -115755970 - MLT1I LTR MaLR -27 382 68 911 264 87 41 chr3 111768726 111769093 -115755485 + MLT1I LTR MaLR 4 387 -22 202 273 39 0 chr3 111769439 111769516 -115755062 + CT-rich Low_complexity Low_complexity 2 81 0 338 247 202 22 chr3 111769646 111769781 -115754797 + MIR SINE MIR 31 188 -74 280 204 61 61 chr3 111770194 111770292 -115754286 + LTR33 LTR ERVL 410 507 -14 23 0 0 0 chr3 111770522 111770545 -115754033 + AT_rich Low_complexity Low_complexity 1 23 0 3994 230 96 12 chr3 111770579 111771741 -115752837 - L1MC4 LINE L1 -140 7902 6644 1909 232 100 4 chr3 111771779 111772248 -115752330 - MLT1F LTR MaLR -28 514 1 523 214 107 51 chr3 111772265 111772430 -115752148 - L1MC4 LINE L1 -1384 6658 6481 1379 174 4 0 chr3 111772430 111772665 -115751913 - MER46A DNA MER2_type 0 236 1 523 214 107 51 chr3 111772665 111772677 -115751901 - L1MC4 LINE L1 -1561 6481 6471 2480 57 0 0 chr3 111772677 111772973 -115751605 - AluY SINE Alu -15 296 1 225 246 0 18 chr3 111773395 111773452 -115751126 + CT-rich Low_complexity Low_complexity 2 57 0 858 92 0 17 chr3 111773657 111773816 -115750762 + AluSg/x SINE Alu 165 321 0 261 0 0 0 chr3 111775247 111775276 -115749302 + (CA)n Simple_repeat Simple_repeat 2 30 0 808 313 105 17 chr3 111775685 111776046 -115748532 + MLT1K LTR MaLR 11 403 -185 2568 44 0 0 chr3 111776141 111776436 -115748142 - AluY SINE Alu -16 295 1 556 301 25 6 chr3 111776590 111776753 -115747825 - MIR SINE MIR -10 252 87 964 157 163 101 chr3 111776762 111777068 -115747510 - MLT1A1 LTR MaLR -40 325 1 6604 92 1 0 chr3 111777650 111778952 -115745626 + L1PA10 LINE L1 4858 6158 -10 1662 180 44 30 chr3 111779269 111779636 -115744942 - MLT1A2 LTR MaLR 0 374 3 912 139 76 17 chr3 111779664 111779800 -115744778 - MER50 LTR ERV1 -132 602 453 2512 40 3 3 chr3 111779800 111780103 -115744475 - AluY SINE Alu -8 303 1 912 139 76 17 chr3 111780103 111780138 -115744440 - MER50 LTR ERV1 -281 453 421 207 146 0 0 chr3 111781160 111781201 -115743377 + (CA)n Simple_repeat Simple_repeat 2 42 0 294 29 0 0 chr3 111781821 111781856 -115742722 + (CAGT)n Simple_repeat Simple_repeat 1 35 0 181 262 139 82 chr3 111781856 111781967 -115742611 - L2 LINE L2 -13 3259 3139 333 280 115 0 chr3 111782417 111782559 -115742019 + MIR SINE MIR 33 197 -65 202 341 22 33 chr3 111783316 111783407 -115741171 - MIR SINE MIR -82 126 37 200 186 93 0 chr3 111783511 111783554 -115741024 + L2 LINE L2 3266 3312 -1 229 229 84 46 chr3 111784137 111784268 -115740310 - L1ME4a LINE L1 -4 6117 5982 279 336 38 23 chr3 111785008 111785139 -115739439 - MIR3 SINE MIR -67 141 9 24 32 0 0 chr3 111785558 111785589 -115738989 + AT_rich Low_complexity Low_complexity 1 31 0 1108 207 14 5 chr3 111786232 111786449 -115738129 + MER20 DNA MER1_type 1 219 0 434 239 60 0 chr3 111786980 111787063 -115737515 - L1MA10 LINE L1 -4 6330 6248 970 230 33 63 chr3 111787063 111787450 -115737128 - L1ME1 LINE L1 -95 6071 5736 401 145 53 0 chr3 111789136 111789212 -115735366 - MER116 DNA Mariner 0 80 1 519 299 104 24 chr3 111789245 111789456 -115735122 + MIR SINE MIR 26 253 -9 342 188 16 0 chr3 111789498 111789562 -115735016 - MER46C DNA MER2_type -11 327 263 276 211 70 9 chr3 111789586 111789700 -115734878 + (TTATA)n Simple_repeat Simple_repeat 5 125 0 611 245 7 26 chr3 111789754 111789905 -115734673 - MER45A DNA AcHobo 0 178 31 313 164 18 0 chr3 111789940 111789995 -115734583 + U7 snRNA snRNA 2 57 -6 387 204 65 11 chr3 111790060 111790153 -115734425 - MER46C DNA MER2_type -102 236 139 3369 18 0 0 chr3 111790157 111790540 -115734038 + L1P1 LINE L1 5381 5763 -392 2246 169 49 2 chr3 111790750 111791159 -115733419 + MSTA LTR MaLR 1 428 0 27 0 0 0 chr3 111791463 111791490 -115733088 + AT_rich Low_complexity Low_complexity 1 27 0 918 228 5 27 chr3 111792172 111792396 -115732182 - MER20 DNA MER1_type 0 219 1 364 291 74 34 chr3 111793907 111794082 -115730496 - MER117 DNA MER1_type -15 182 1 1552 168 30 56 chr3 111794865 111795169 -115729409 + AluJo SINE Alu 3 298 -14 651 310 265 9 chr3 111795440 111795979 -115728599 - L3 LINE CR1 -557 1020 344 22 0 0 0 chr3 111797626 111797648 -115726930 + AT_rich Low_complexity Low_complexity 1 22 0 334 157 24 12 chr3 111797678 111797761 -115726817 + CT-rich Low_complexity Low_complexity 2 85 0 251 304 76 0 chr3 111797766 111797845 -115726733 - L2 LINE L2 -1 3271 3187 183 80 0 0 chr3 111798793 111798818 -115725760 + (T)n Simple_repeat Simple_repeat 1 25 0 41142 29 21 1 chr3 111798840 111804867 -115719711 - L1HS LINE L1 -1 6154 4 228 291 0 12 chr3 111806488 111806574 -115718004 + CT-rich Low_complexity Low_complexity 3 87 0 509 137 0 11 chr3 111806582 111806677 -115717901 + (TTCC)n Simple_repeat Simple_repeat 3 96 0 192 125 0 0 chr3 111806687 111806719 -115717859 + (T)n Simple_repeat Simple_repeat 1 32 0 913 218 77 20 chr3 111807125 111807373 -115717205 - MIR SINE MIR 0 262 1 432 115 0 0 chr3 111807704 111807765 -115716813 - AluSp/q SINE Alu -21 292 232 550 256 28 11 chr3 111807928 111808108 -115716470 + LTR41 LTR ERVL 1 183 -590 350 201 9 0 chr3 111808635 111808713 -115715865 + LTR41 LTR ERVL 707 772 -1 2090 172 110 25 chr3 111808842 111809360 -115715218 - L1MC2 LINE L1 -12 6332 5771 2786 188 36 18 chr3 111809360 111809978 -115714600 - L1PA15 LINE L1 0 6165 5537 1573 197 18 11 chr3 111811844 111812225 -115712353 - LTR37A LTR ERV1 -2 424 41 5728 199 31 62 chr3 111812815 111814404 -115710174 + MER31B-int LTR ERV1 3378 4916 -20 1374 242 43 21 chr3 111814404 111814822 -115709756 + MER31B LTR ERV1 1 427 -39 1800 121 121 44 chr3 111814829 111815167 -115709411 + THE1B LTR MaLR 1 364 0 288 223 77 15 chr3 111815231 111815361 -115709217 + LTR37A LTR ERV1 289 426 0 266 250 33 0 chr3 111815460 111815520 -115709058 - MER91 DNA MER1_type -2 138 77 388 229 10 0 chr3 111815553 111815649 -115708929 - MER58 DNA MER1_type -72 269 173 11648 213 30 20 chr3 111815688 111818094 -115706484 - L1PA16 LINE L1 -9 6860 4482 2103 137 22 27 chr3 111818094 111818460 -115706118 - THE1B LTR MaLR 0 364 1 10788 107 6 34 chr3 111818460 111820085 -115704493 - THE1B-int LTR MaLR 0 1580 1 2001 163 42 22 chr3 111820085 111820442 -115704136 - THE1B LTR MaLR 0 364 1 11648 213 30 20 chr3 111820442 111822224 -115702354 - L1PA16 LINE L1 -2387 4482 2721 4271 24 0 0 chr3 111822224 111822717 -115701861 - L1PA3 LINE L1 -3 6152 5660 11648 213 30 20 chr3 111822717 111824278 -115700300 - L1PA16 LINE L1 -4148 2721 958 1150 140 0 65 chr3 111824276 111824399 -115700179 - L1PA16 LINE L1 -6647 202 97 * 2392 30 40 13 chr3 111824399 111824698 -115699880 + AluY SINE Alu 1 307 -4 1150 140 0 65 chr3 111824698 111824788 -115699790 - L1PA16 LINE L1 -6752 97 3 409 273 36 22 chr3 111825345 111825484 -115699094 + MLT1F LTR MaLR 147 287 -268 1661 162 85 6 chr3 111825529 111825857 -115698721 - MSTB LTR MaLR -72 354 1 336 125 18 0 chr3 111825857 111825913 -115698665 - MSTB-int LTR MaLR 0 1651 1595 * 2624 179 40 6 chr3 111825912 111826444 -115698134 - MSTB-int LTR MaLR -1101 550 1 2139 163 87 2 chr3 111826444 111826837 -115697741 - MSTB LTR MaLR 0 426 1 498 298 66 9 chr3 111826837 111827065 -115697513 + MLT1F LTR MaLR 289 529 -13 23 0 0 0 chr3 111827158 111827181 -115697397 + AT_rich Low_complexity Low_complexity 1 23 0 226 207 86 0 chr3 111827274 111827332 -115697246 + L1ME LINE L1 5650 5712 -452 23 33 0 0 chr3 111827387 111827417 -115697161 + AT_rich Low_complexity Low_complexity 1 30 0 222 37 0 0 chr3 111827623 111827650 -115696928 + (TA)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr3 111827843 111827864 -115696714 + AT_rich Low_complexity Low_complexity 1 21 0 186 133 0 0 chr3 111827883 111827913 -115696665 + (TA)n Simple_repeat Simple_repeat 1 30 0 291 304 165 23 chr3 111827933 111828199 -115696379 - L1MC/D LINE L1 -2154 5654 5351 710 230 37 34 chr3 111829690 111830302 -115694276 - L1MC4 LINE L1 -548 7494 6722 343 275 0 13 chr3 111830336 111830353 -115694225 - L1MA10 LINE L1 -2 6332 6316 2824 238 42 30 chr3 111830353 111831014 -115693564 - L1ME2 LINE L1 -9 6155 5503 2188 118 13 10 chr3 111831014 111831318 -115693260 - AluSx SINE Alu -7 305 1 2824 238 42 30 chr3 111831318 111831579 -115692999 - L1ME2 LINE L1 -661 5503 5246 2413 60 10 0 chr3 111831579 111831878 -115692700 + AluY SINE Alu 1 302 -9 2824 238 42 30 chr3 111831878 111832124 -115692454 - L1ME2 LINE L1 -918 5246 4989 2772 134 12 2 chr3 111832593 111833017 -115691561 - MSTA LTR MaLR 0 428 1 1014 167 35 70 chr3 111833064 111833110 -115691468 - MER20 DNA MER1_type 0 219 173 1946 154 35 53 chr3 111833110 111833507 -115691071 - MLT1B LTR MaLR 0 390 1 1014 167 35 70 chr3 111833507 111833687 -115690891 - MER20 DNA MER1_type -46 173 1 415 202 43 11 chr3 111833968 111834062 -115690516 - L1MC4 LINE L1 -1452 6590 6494 348 24 0 0 chr3 111834070 111834111 -115690467 + (TG)n Simple_repeat Simple_repeat 1 41 0 196 333 141 10 chr3 111835140 111835239 -115689339 + MIR SINE MIR 34 145 -63 394 321 71 6 chr3 111837182 111837350 -115687228 + MIR SINE MIR 20 198 -64 1977 108 4 0 chr3 111837470 111837728 -115686850 - AluSx SINE Alu -53 259 1 318 267 292 12 chr3 111837797 111837958 -115686620 - L2 LINE L2 -5 3308 3103 2978 223 23 2 chr3 111837975 111838615 -115685963 - L1M2c LINE L1 -4988 1801 1148 578 288 7 13 chr3 111838619 111838772 -115685806 - L2 LINE L2 -239 3074 2923 1910 181 38 28 chr3 111838772 111839314 -115685264 - MLT2A1 LTR ERVL 0 554 1 650 241 7 0 chr3 111839327 111839472 -115685106 + MER58A DNA MER1_type 12 157 0 3149 112 10 52 chr3 111839473 111840069 -115684509 + L1MA9 LINE L1 5711 6281 -31 229 200 46 46 chr3 111840132 111840197 -115684381 + MER58 DNA MER1_type 2356 2420 0 26 0 0 0 chr3 111840271 111840297 -115684281 + AT_rich Low_complexity Low_complexity 1 26 0 187 323 81 0 chr3 111840890 111840989 -115683589 + MIR SINE MIR 56 162 -100 4013 146 77 22 chr3 111841894 111842695 -115681883 - L1MA7 LINE L1 0 6291 5447 1857 189 53 33 chr3 111843102 111845217 -115679361 + L1M1 LINE L1 8 2080 -4407 3623 25 7 5 chr3 111845217 111845652 -115678926 + L1PA4 LINE L1 5717 6152 -3 1857 189 53 33 chr3 111845652 111847552 -115677026 + L1M1 LINE L1 2080 3941 -2546 2036 131 3 0 chr3 111847552 111847861 -115676717 + AluSx SINE Alu 1 310 0 1857 189 53 33 chr3 111847861 111848977 -115675601 + L1M1 LINE L1 3941 5398 -1089 643 186 31 0 chr3 111848977 111849106 -115675472 - L1PA16 LINE L1 -10 6156 6024 1857 189 53 33 chr3 111849106 111849564 -115675014 + L1M1 LINE L1 5398 5846 -641 * 3305 196 24 17 chr3 111849562 111850324 -115674254 + L1PA15 LINE L1 3259 4025 -2121 5510 128 19 1 chr3 111850324 111851301 -115673277 + L1PA15 LINE L1 5171 6165 0 1196 97 0 0 chr3 111851364 111851539 -115673039 + L1MA3 LINE L1 6131 6305 0 41610 44 3 1 chr3 111851547 111857690 -115666888 + L1PA4 LINE L1 1 6152 -3 847 173 61 0 chr3 111857730 111857927 -115666651 + L1 LINE L1 5155 5363 -783 497 262 78 59 chr3 111857944 111858200 -115666378 + L1M2 LINE L1 370 630 -6579 615 314 13 20 chr3 111858244 111858511 -115666067 + L1PB4 LINE L1 204 800 -6409 300 341 73 0 chr3 111858704 111858786 -115665792 + L1PB4 LINE L1 1079 1166 -6043 2924 239 35 13 chr3 111858789 111859504 -115665074 + L1PB4 LINE L1 1343 2073 -5136 12451 195 22 26 chr3 111859533 111863925 -115660653 + L1PB4 LINE L1 2840 7216 -2 1923 153 0 3 chr3 111863926 111864265 -115660313 + L1MA4 LINE L1 5353 5690 -610 1189 196 6 75 chr3 111864261 111864623 -115659955 + L1MA4 LINE L1 5964 6300 0 * 22 0 0 0 chr3 111865308 111865330 -115659248 + AT_rich Low_complexity Low_complexity 1 22 0 318 306 19 21 chr3 111865595 111865738 -115658840 + MIR3 SINE MIR 60 204 -4 180 219 0 0 chr3 111866454 111866495 -115658083 + GA-rich Low_complexity Low_complexity 5 45 0 915 228 5 27 chr3 111866814 111867038 -115657540 - MER20 DNA MER1_type 0 219 1 315 309 66 20 chr3 111868549 111868701 -115655877 - MER117 DNA MER1_type -15 182 24 1554 171 30 56 chr3 111869507 111869811 -115654767 + AluJo SINE Alu 3 298 -14 672 311 161 14 chr3 111870082 111870623 -115653955 - L3 LINE CR1 -557 1020 344 22 0 0 0 chr3 111872275 111872297 -115652281 + AT_rich Low_complexity Low_complexity 1 22 0 334 157 24 12 chr3 111872327 111872410 -115652168 + CT-rich Low_complexity Low_complexity 2 85 0 234 316 76 0 chr3 111872415 111872494 -115652084 - L2 LINE L2 -1 3271 3187 228 291 0 12 chr3 111875058 111875144 -115649434 + CT-rich Low_complexity Low_complexity 3 87 0 473 143 0 11 chr3 111875152 111875243 -115649335 + (TTCC)n Simple_repeat Simple_repeat 3 92 0 809 246 5 0 chr3 111875288 111875475 -115649103 - AluJb SINE Alu -8 304 117 41386 47 1 1 chr3 111875475 111881610 -115642968 - L1PA3 LINE L1 -17 6138 7 741 164 23 0 chr3 111881617 111881745 -115642833 - AluJb SINE Alu -180 132 2 197 262 78 78 chr3 111881747 111881850 -115642728 + L2 LINE L2 2555 2657 -657 612 211 123 59 chr3 111882032 111882236 -115642342 - MER20 DNA MER1_type -2 217 1 250 333 42 25 chr3 111882391 111882511 -115642067 - L2 LINE L2 -345 2968 2847 322 270 131 102 chr3 111882594 111883182 -115641396 - L2 LINE L2 -2619 695 91 2109 172 47 38 chr3 111884822 111885292 -115639286 + MER74A LTR ERVL 1 474 -84 1986 150 71 30 chr3 111885293 111885803 -115638775 + MLT2A2 LTR ERVL 1 554 0 448 134 73 0 chr3 111885803 111885884 -115638694 + MER74A LTR ERVL 471 557 -1 1886 133 104 0 chr3 111886229 111886576 -115638002 - Tigger4(Zombi) DNA MER2_type -3 2728 2346 8114 135 19 3 chr3 111886591 111887932 -115636646 - Tigger4(Zombi) DNA MER2_type -799 1932 571 1923 190 41 31 chr3 111887926 111888316 -115636262 - Tigger4(Zombi) DNA MER2_type -2337 394 1 * 456 234 16 57 chr3 111889461 111889585 -115634993 + MER5B DNA MER1_type 1 119 -59 257 125 0 21 chr3 111889586 111889634 -115634944 + (TTCC)n Simple_repeat Simple_repeat 2 48 0 1937 179 0 0 chr3 111889634 111889946 -115634632 - AluSx SINE Alu 0 312 1 197 213 16 98 chr3 111889947 111890008 -115634570 + MER5B DNA MER1_type 123 178 0 7222 88 1 1 chr3 111890063 111890080 -115634498 - L1P LINE L1 -5129 1017 1001 3140 26 49 0 chr3 111890080 111890467 -115634111 - L1PA4 LINE L1 0 6155 5750 7222 88 1 1 chr3 111890467 111891466 -115633112 - L1P LINE L1 -5144 1002 1 183 42 0 0 chr3 111893576 111893600 -115630978 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 52 30 0 0 chr3 111894210 111894276 -115630302 + AT_rich Low_complexity Low_complexity 1 66 0 2081 148 0 0 chr3 111894370 111894668 -115629910 - AluSx SINE Alu -14 298 1 292 222 17 26 chr3 111894680 111894693 -115629885 - L1MA10 LINE L1 -3 6331 6319 577 226 53 26 chr3 111894693 111894883 -115629695 - L1ME1 LINE L1 -5 6161 5967 2202 199 79 2 chr3 111894913 111895536 -115629042 - L1ME1 LINE L1 -336 5830 5170 300 264 236 20 chr3 111895597 111895745 -115628833 - L2 LINE L2 -207 3106 2927 2891 184 22 17 chr3 111895751 111896250 -115628328 + MLT2B3 LTR ERVL 3 507 -47 514 0 15 15 chr3 111896250 111896317 -115628261 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 2891 184 22 17 chr3 111896317 111896356 -115628222 + MLT2B3 LTR ERVL 507 544 -10 562 328 20 25 chr3 111896374 111896578 -115628000 - L2 LINE L2 -397 2917 2715 187 100 25 25 chr3 111896578 111896618 -115627960 + (TA)n Simple_repeat Simple_repeat 2 41 0 303 243 0 87 chr3 111896626 111896729 -115627849 - L1MC4 LINE L1 -1339 6703 6610 * 305 235 71 0 chr3 111896698 111896783 -115627795 - L1MC4 LINE L1 -1339 6703 6613 498 188 0 0 chr3 111896868 111896969 -115627609 + (TA)n Simple_repeat Simple_repeat 2 102 0 324 0 0 0 chr3 111896971 111897007 -115627571 + (TC)n Simple_repeat Simple_repeat 1 36 0 764 332 210 4 chr3 111897019 111897543 -115627035 - L2 LINE L2 -626 2688 2057 362 184 26 138 chr3 111897789 111897941 -115626637 + L1ME3A LINE L1 4081 4215 -1931 32 57 0 0 chr3 111898130 111898183 -115626395 + AT_rich Low_complexity Low_complexity 1 53 0 840 291 89 46 chr3 111898218 111898892 -115625686 + L1ME3A LINE L1 4530 5232 -914 776 296 73 8 chr3 111899034 111899402 -115625176 + L1ME3A LINE L1 5260 5651 -511 342 285 188 16 chr3 111899449 111899635 -115624943 + L1ME3A LINE L1 5731 5948 -222 399 145 0 0 chr3 111899901 111899963 -115624615 + AluS SINE Alu 1 62 -238 180 219 0 0 chr3 111900011 111900052 -115624526 + (CTA)n Simple_repeat Simple_repeat 2 42 0 737 268 16 22 chr3 111900094 111900277 -115624301 - MIR SINE MIR -50 212 31 267 81 0 0 chr3 111900305 111900342 -115624236 + tRNA-Cys-TGC tRNA tRNA 2 38 -37 221 250 0 0 chr3 111900473 111900521 -115624057 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 293 273 13 0 chr3 111900736 111900813 -115623765 + Tigger8 DNA MER2_type 583 660 -6 672 213 10 61 chr3 111901967 111902164 -115622414 + LTR41 LTR ERVL 1 187 -586 397 242 51 51 chr3 111902391 111902569 -115622009 + LTR41 LTR ERVL 584 761 -12 324 350 89 19 chr3 111903815 111903972 -115620606 + MIR3 SINE MIR 8 175 -33 654 319 69 48 chr3 111905354 111906108 -115618470 - L2 LINE L2 0 3313 2541 249 330 214 0 chr3 111906210 111906322 -115618256 - MIR3 SINE MIR -38 170 35 5052 176 29 10 chr3 111906593 111908042 -115616536 + L1MA4 LINE L1 4824 6300 0 414 0 0 0 chr3 111908471 111908517 -115616061 + (TA)n Simple_repeat Simple_repeat 2 47 0 2198 79 43 0 chr3 111909116 111909394 -115615184 - AluSg SINE Alu -20 290 1 487 335 11 45 chr3 111910406 111910675 -115613903 - MIR SINE MIR 0 262 3 203 317 133 0 chr3 111910998 111911118 -115613460 - L3 LINE CR1 -1 1576 1441 415 240 73 26 chr3 111911911 111912103 -115612475 + L1M4 LINE L1 3792 3992 -2154 * 1093 141 0 0 chr3 111912096 111912266 -115612312 - L1MA1 LINE L1 -566 5736 5567 4015 79 3 14 chr3 111912266 111912835 -115611743 + L1MA1 LINE L1 5739 6302 0 1787 86 4 0 chr3 111912861 111913117 -115611461 + L1MA1 LINE L1 6046 6302 0 2000 121 63 30 chr3 111913168 111913531 -115611047 - THE1C LTR MaLR 0 375 1 550 307 109 19 chr3 111913696 111914110 -115610468 + L1M4 LINE L1 4238 4688 -1458 389 168 73 11 chr3 111914321 111914432 -115610146 - L1ME3A LINE L1 -223 5941 5824 2364 62 0 10 chr3 111914450 111914742 -115609836 - AluY SINE Alu -22 289 1 1259 234 68 39 chr3 111914753 111915167 -115609411 - L1ME3A LINE L1 -410 5756 5331 427 217 121 51 chr3 111915200 111915357 -115609221 - L1ME3A LINE L1 -2065 4081 3914 222 186 0 34 chr3 111915394 111915453 -115609125 + (TA)n Simple_repeat Simple_repeat 2 58 0 1257 253 60 44 chr3 111915462 111915861 -115608717 - L1M4 LINE L1 -918 5228 4818 441 0 0 0 chr3 111915861 111915910 -115608668 + (TAGA)n Simple_repeat Simple_repeat 1 49 0 1257 253 60 44 chr3 111915910 111915989 -115608589 - L1M4 LINE L1 -1328 4818 4742 554 266 53 28 chr3 111916038 111916320 -115608258 - L1M4 LINE L1 -3478 2668 2380 263 85 21 0 chr3 111916335 111916382 -115608196 + (TA)n Simple_repeat Simple_repeat 1 48 0 315 0 0 0 chr3 111916385 111916420 -115608158 + (TC)n Simple_repeat Simple_repeat 2 36 0 243 0 0 0 chr3 111916419 111916446 -115608132 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 19127 177 20 6 chr3 111916455 111919891 -115604687 + L1MA4 LINE L1 12 3497 -4068 3676 173 42 22 chr3 111920010 111920837 -115603741 + L1MA4 LINE L1 6876 7719 0 468 0 0 0 chr3 111921265 111921317 -115603261 + (TA)n Simple_repeat Simple_repeat 2 53 0 189 0 0 0 chr3 111922256 111922277 -115602301 + (TA)n Simple_repeat Simple_repeat 1 21 0 30 45 0 0 chr3 111923485 111923529 -115601049 + AT_rich Low_complexity Low_complexity 1 44 0 612 159 3 5 chr3 111923538 111923666 -115600912 + L1 LINE L1 4915 5041 -1105 270 250 28 0 chr3 111923659 111923731 -115600847 + L1MC5 LINE L1 7710 7783 -178 * 22 0 0 0 chr3 111923821 111923843 -115600735 + AT_rich Low_complexity Low_complexity 1 22 0 812 181 0 0 chr3 111923843 111923976 -115600602 - AluJo SINE Alu -176 136 4 396 250 36 79 chr3 111928102 111928137 -115596441 + MIR3 SINE MIR 65 100 -108 1865 139 62 31 chr3 111928137 111928490 -115596088 + THE1B LTR MaLR 1 364 0 11201 98 13 3 chr3 111928490 111930055 -115594523 + THE1B-int LTR MaLR 1 1580 0 2029 121 65 42 chr3 111930055 111930369 -115594209 + THE1B LTR MaLR 1 325 -39 1951 137 0 39 chr3 111930369 111930675 -115593903 - AluSg SINE Alu -16 294 1 2029 121 65 42 chr3 111930675 111930716 -115593862 + THE1B LTR MaLR 325 364 0 396 250 36 79 chr3 111930716 111930818 -115593760 + MIR3 SINE MIR 97 198 -10 2126 204 59 42 chr3 111931905 111932411 -115592167 - MLT2B1 LTR ERVL -5 515 1 274 227 188 0 chr3 111932726 111932854 -115591724 - L1ME4a LINE L1 -14 6107 5956 21 36 0 0 chr3 111933085 111933113 -115591465 + AT_rich Low_complexity Low_complexity 1 28 0 733 250 80 0 chr3 111933996 111934208 -115590370 + MIR SINE MIR 34 262 0 404 293 63 37 chr3 111934337 111934528 -115590050 - MIR SINE MIR -10 252 57 213 310 123 59 chr3 111935783 111936360 -115588218 + L2 LINE L2 2193 2806 -508 264 279 0 13 chr3 111936615 111936694 -115587884 + (TTCA)n Simple_repeat Simple_repeat 2 79 0 573 239 72 50 chr3 111936700 111936922 -115587656 - L2 LINE L2 -6 3307 3081 1225 189 46 105 chr3 111936923 111937293 -115587285 - MLT1A1 LTR MaLR -17 348 1 243 284 15 0 chr3 111937293 111937360 -115587218 - L2 LINE L2 -230 3083 3016 212 349 23 0 chr3 111937393 111937522 -115587056 - L2 LINE L2 -811 2503 2372 200 276 10 71 chr3 111938181 111938279 -115586299 + MIR SINE MIR 88 179 -83 182 283 162 20 chr3 111938579 111938678 -115585900 + L2 LINE L2 3199 3311 -2 309 371 53 7 chr3 111939593 111939744 -115584834 + MIR3 SINE MIR 36 193 -15 1949 121 56 25 chr3 111941562 111941918 -115582660 - THE1C LTR MaLR 0 375 9 225 175 88 0 chr3 111942181 111942238 -115582340 + (CATATA)n Simple_repeat Simple_repeat 4 65 0 23 54 0 0 chr3 111942371 111942408 -115582170 + AT_rich Low_complexity Low_complexity 1 37 0 290 237 66 13 chr3 111943011 111943087 -115581491 - L2 LINE L2 -9 3263 3184 776 219 11 11 chr3 111943249 111943427 -115581151 + MER5B DNA MER1_type 1 178 0 308 352 47 23 chr3 111943485 111943613 -115580965 + L2 LINE L2 3142 3272 0 234 0 0 0 chr3 111944045 111944071 -115580507 + (TG)n Simple_repeat Simple_repeat 2 27 0 1309 235 17 56 chr3 111944909 111945321 -115579257 - L1M1 LINE L1 -5273 761 366 577 336 17 36 chr3 111946011 111946368 -115578210 - L1M1 LINE L1 -5600 355 6 514 376 83 46 chr3 111946554 111947235 -115577343 + L2 LINE L2 2566 3272 0 228 242 137 57 chr3 111947245 111947369 -115577209 - MLT1J LTR MaLR 0 511 378 954 180 55 122 chr3 111947437 111947518 -115577060 + MLT1B LTR MaLR 43 128 -262 1350 212 94 21 chr3 111947518 111947858 -115576720 + MLT1A1 LTR MaLR 1 365 0 954 180 55 122 chr3 111947858 111948137 -115576441 + MLT1B LTR MaLR 128 379 -11 320 300 90 41 chr3 111948165 111948455 -115576123 - MLT1J LTR MaLR -202 309 6 2814 204 8 0 chr3 111949541 111950057 -115574521 + MLT2B1 LTR ERVL 1 520 0 324 330 144 5 chr3 111950128 111950343 -115574235 - MIR SINE MIR -11 251 7 407 322 60 22 chr3 111950366 111950549 -115574029 + MIR SINE MIR 3 192 -70 187 351 102 19 chr3 111950868 111951190 -115573388 - L2 LINE L2 -922 2392 2044 521 178 39 39 chr3 111952101 111952281 -115572297 + Charlie7 DNA MER1_type 2431 2610 -2 1411 243 20 38 chr3 111953956 111954015 -115570563 - MER39 LTR ERV1 0 707 648 3201 92 16 0 chr3 111954015 111954452 -115570126 - MLT2A1 LTR ERVL 0 444 1 1411 243 20 38 chr3 111954452 111954841 -115569737 - MER39 LTR ERV1 -59 648 267 1453 198 80 72 chr3 111954902 111955244 -115569334 + MLT2D LTR ERVL 8 346 -51 186 43 0 0 chr3 111955244 111955267 -115569311 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 369 0 0 0 chr3 111955266 111955307 -115569271 + (TG)n Simple_repeat Simple_repeat 2 42 0 1453 198 80 72 chr3 111955267 111955337 -115569241 + MLT2D LTR ERVL 346 383 -14 2017 148 0 0 chr3 111958493 111958776 -115565802 - AluSx SINE Alu -29 283 1 336 102 0 0 chr3 111959375 111959424 -115565154 + (CA)n Simple_repeat Simple_repeat 2 50 0 485 303 81 16 chr3 111959453 111959638 -115564940 + MIR3 SINE MIR 2 198 -10 2216 155 44 2 chr3 111960391 111960797 -115563781 - MSTA LTR MaLR 0 428 6 2049 177 32 15 chr3 111960977 111961378 -115563200 - MLT1C LTR MaLR 0 467 60 217 343 0 0 chr3 111962124 111962197 -115562381 - MIR SINE MIR -26 236 164 724 315 32 12 chr3 111962352 111962603 -115561975 - MIR SINE MIR -1 261 6 185 274 20 0 chr3 111962922 111962973 -115561605 + MIR SINE MIR 100 151 -57 22 35 0 0 chr3 111962991 111963020 -115561558 + AT_rich Low_complexity Low_complexity 1 29 0 21 57 0 0 chr3 111963189 111963224 -115561354 + AT_rich Low_complexity Low_complexity 1 35 0 802 11 0 0 chr3 111963394 111963487 -115561091 - L1PA3 LINE L1 -3 6152 6060 11474 28 4 0 chr3 111963487 111965571 -115559007 + L1PA3 LINE L1 3954 6044 -111 303 28 0 0 chr3 111965742 111965778 -115558800 + (TG)n Simple_repeat Simple_repeat 1 36 0 21 57 0 0 chr3 111966145 111966180 -115558398 + AT_rich Low_complexity Low_complexity 1 35 0 319 283 77 118 chr3 111966880 111967281 -115557297 - L1M4 LINE L1 -784 5362 4995 4046 78 4 4 chr3 111967281 111967835 -115556743 - L1PB1 LINE L1 -1 6150 5597 319 283 77 118 chr3 111967835 111968070 -115556508 - L1M4 LINE L1 -1151 4995 4752 620 214 73 31 chr3 111968074 111968266 -115556312 - L1PA15 LINE L1 -7 6158 5959 * 22656 49 2 5 chr3 111968243 111968275 -115556303 - L1P LINE L1 -3183 2963 2932 4400 37 24 0 chr3 111968275 111968822 -115555756 - L1PA4 LINE L1 -3 6152 5593 22656 49 2 5 chr3 111968822 111971761 -115552817 - L1P LINE L1 -3214 2932 1 37 76 0 0 chr3 111972706 111972785 -115551793 + AT_rich Low_complexity Low_complexity 1 79 0 1536 195 10 30 chr3 111973057 111973360 -115551218 + AluJo SINE Alu 1 297 -15 24 53 0 0 chr3 111973378 111973416 -115551162 + AT_rich Low_complexity Low_complexity 1 38 0 353 308 49 36 chr3 111974477 111974667 -115549911 + MIR3 SINE MIR 15 212 -50 378 0 0 0 chr3 111975509 111975551 -115549027 + (TG)n Simple_repeat Simple_repeat 1 42 0 1020 209 92 42 chr3 111976418 111976762 -115547816 + MLT1A1 LTR MaLR 2 365 0 26 0 0 0 chr3 111977048 111977074 -115547504 + AT_rich Low_complexity Low_complexity 1 26 0 295 288 36 0 chr3 111977467 111977606 -115546972 - L1ME4a LINE L1 0 6121 5978 2337 132 19 8 chr3 111977701 111978072 -115546506 + THE1C LTR MaLR 1 375 0 10126 119 43 5 chr3 111978072 111979593 -115544985 + THE1C-int LTR MaLR 1 1580 0 2387 125 11 16 chr3 111979593 111979970 -115544608 + THE1C LTR MaLR 1 375 0 232 304 0 29 chr3 111980249 111980318 -115544260 + MIR SINE MIR 33 99 -109 598 361 22 11 chr3 111981107 111981381 -115543197 - L3b LINE CR1 -178 1405 1129 181 273 65 13 chr3 111981846 111981923 -115542655 - L2 LINE L2 -5 3308 3228 1149 276 69 63 chr3 111982827 111983368 -115541210 + L1MEc LINE L1 872 1408 -4988 294 29 0 0 chr3 111983368 111983403 -115541175 + (GA)n Simple_repeat Simple_repeat 2 36 0 1149 276 69 63 chr3 111983403 111984246 -115540332 + L1MEc LINE L1 1408 2264 -4132 771 114 57 29 chr3 111984303 111984478 -115540100 + L1MA4 LINE L1 6113 6292 -8 895 292 60 26 chr3 111984647 111985391 -115539187 + L1MEc LINE L1 2398 3232 -2983 1881 171 116 16 chr3 111985391 111985778 -115538800 - MSTA LTR MaLR -2 426 1 895 292 60 26 chr3 111985778 111986030 -115538548 + L1MEc LINE L1 3232 3474 -2741 1039 166 33 104 chr3 111986040 111986347 -115538231 + THE1C LTR MaLR 91 375 0 8243 152 48 51 chr3 111986349 111987931 -115536647 + MSTA-int LTR MaLR 3 1580 0 1663 168 171 11 chr3 111987931 111988300 -115536278 + MSTA LTR MaLR 1 428 0 2078 178 19 28 chr3 111988328 111988552 -115536026 - MSTA LTR MaLR 0 428 208 2028 145 21 43 chr3 111988552 111988924 -115535654 + THE1B LTR MaLR 1 364 0 2078 178 19 28 chr3 111988924 111989131 -115535447 - MSTA LTR MaLR -220 208 1 8581 175 51 3 chr3 111989131 111990706 -115533872 - MSTA-int LTR MaLR 0 1651 1 2156 162 38 24 chr3 111990706 111991125 -115533453 - MSTA LTR MaLR 0 428 4 2676 252 70 25 chr3 111991128 111992393 -115532185 + L1MEc LINE L1 3822 5143 -1072 515 283 97 22 chr3 111992398 111992832 -115531746 + MLT1D LTR MaLR 2 461 -6 440 208 97 22 chr3 111992841 111993067 -115531511 + L1MEc LINE L1 5147 5389 -826 13417 185 35 16 chr3 111993084 111996978 -115527600 + L1PA15 LINE L1 18 3835 -3749 1621 70 5 0 chr3 111996978 111997193 -115527385 - L1PA7 LINE L1 0 6154 5939 13417 185 35 16 chr3 111997193 111998612 -115525966 + L1PA15 LINE L1 3835 5225 -2359 225 0 0 0 chr3 111998612 111998637 -115525941 + (CAAAA)n Simple_repeat Simple_repeat 3 27 0 13417 185 35 16 chr3 111998637 111999192 -115525386 + L1PA15 LINE L1 5225 5768 -1816 6159 108 25 0 chr3 111999192 112000275 -115524303 - L1PA11 LINE L1 -6 6168 5071 13417 185 35 16 chr3 112000275 112001179 -115523399 + L1PA15 LINE L1 5768 7584 0 401 186 110 51 chr3 112001187 112001305 -115523273 + L1ME2 LINE L1 6018 6142 -22 9517 238 33 86 chr3 112001331 112004805 -115519773 + L1PA12 LINE L1 17 3306 -4278 1317 124 10 0 chr3 112004784 112004986 -115519592 + L1PA15 LINE L1 6824 7027 -576 * 1801 47 26 4 chr3 112004992 112005225 -115519353 - L1PA4 LINE L1 -3 6152 5915 3408 145 2 25 chr3 112005225 112005817 -115518761 + L1PA15 LINE L1 7024 7602 -1 487 335 11 45 chr3 112006855 112007124 -115517454 - MIR SINE MIR 0 262 3 203 317 133 0 chr3 112007448 112007568 -115517010 - L3 LINE CR1 -1 1576 1441 431 237 79 21 chr3 112008362 112008552 -115516026 + L1M4 LINE L1 3792 3992 -2154 * 658 159 0 9 chr3 112008545 112008658 -115515920 - L1M1 LINE L1 -566 5736 5625 22 0 0 0 chr3 112008735 112008757 -115515821 + AT_rich Low_complexity Low_complexity 1 22 0 812 181 0 0 chr3 112008757 112008890 -115515688 - AluJo SINE Alu -176 136 4 549 299 111 24 chr3 112012060 112012475 -115512103 + L1M4 LINE L1 4238 4688 -1458 361 183 0 0 chr3 112012781 112012841 -115511737 - AluJ/FLAM SINE Alu -242 60 1 1614 178 38 3 chr3 112012843 112013135 -115511443 - AluJb SINE Alu -10 302 1 395 337 47 21 chr3 112014524 112014717 -115509861 + L3b LINE CR1 1184 1381 -202 225 0 0 0 chr3 112014944 112014969 -115509609 + (A)n Simple_repeat Simple_repeat 1 25 0 2404 62 0 13 chr3 112015137 112015445 -115509133 - AluY SINE Alu -7 304 1 268 228 54 33 chr3 112015852 112015944 -115508634 - MER3 DNA MER1_type -104 105 12 451 222 97 54 chr3 112015944 112016129 -115508449 - L1ME2 LINE L1 -148 6016 5824 2364 62 0 10 chr3 112016147 112016439 -115508139 - AluY SINE Alu -22 289 1 1266 234 68 39 chr3 112016450 112016864 -115507714 - L1ME2 LINE L1 -410 5756 5331 427 217 121 51 chr3 112016897 112017054 -115507524 - L1ME2 LINE L1 -2065 4081 3914 222 186 0 34 chr3 112017091 112017150 -115507428 + (TA)n Simple_repeat Simple_repeat 1 57 0 1258 246 63 46 chr3 112017159 112017558 -115507020 - L1M4 LINE L1 -918 5228 4818 405 0 0 0 chr3 112017558 112017603 -115506975 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 1258 246 63 46 chr3 112017603 112017682 -115506896 - L1M4 LINE L1 -1328 4818 4742 558 266 53 28 chr3 112017731 112018013 -115506565 - L1M4 LINE L1 -3478 2668 2380 319 256 11 11 chr3 112018029 112018119 -115506459 - L1MC4 LINE L1 -1339 6703 6614 19643 179 33 7 chr3 112018138 112021539 -115503039 + L1M1 LINE L1 12 3527 -4038 738 53 0 0 chr3 112021539 112021634 -115502944 + (GGAA)n Simple_repeat Simple_repeat 3 97 0 19643 179 33 7 chr3 112021634 112022045 -115502533 + L1M1 LINE L1 3527 3926 -3639 1173 184 21 5 chr3 112022034 112023305 -115501273 + L1M1 LINE L1 5654 7029 -695 * 17235 174 23 7 chr3 112023306 112026344 -115498234 + L1MA2 LINE L1 16 3103 -4462 14852 172 25 7 chr3 112026337 112030542 -115494036 + L1MA2 LINE L1 3433 7723 0 * 9147 139 30 1 chr3 112030555 112032038 -115492540 - Tigger1 DNA MER2_type -186 2232 707 252 346 221 0 chr3 112032492 112032746 -115491832 + L2 LINE L2 1889 2198 -1116 1828 129 4 4 chr3 112033167 112033430 -115491148 + AluSx SINE Alu 1 263 -49 189 306 0 0 chr3 112033716 112033765 -115490813 + L2 LINE L2 2990 3038 -234 25 0 0 0 chr3 112034093 112034118 -115490460 + AT_rich Low_complexity Low_complexity 1 25 0 3269 42 10 0 chr3 112035126 112035532 -115489046 + L1PA3 LINE L1 5743 6152 -3 21 36 0 0 chr3 112036494 112036522 -115488056 + AT_rich Low_complexity Low_complexity 1 28 0 381 43 0 0 chr3 112038145 112038192 -115486386 + (TG)n Simple_repeat Simple_repeat 1 47 0 2209 153 19 11 chr3 112038327 112038693 -115485885 - MLT2D LTR ERVL -45 369 1 652 263 94 19 chr3 112038880 112039188 -115485390 + HAL1 LINE L1 1404 1734 -773 210 71 0 0 chr3 112039868 112039896 -115484682 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 724 296 0 16 chr3 112040563 112040749 -115483829 + MIR SINE MIR 3 185 -77 1982 150 112 25 chr3 112040803 112041002 -115483576 - MSTA LTR MaLR 0 428 248 2464 73 0 0 chr3 112041002 112041302 -115483276 - AluY SINE Alu -11 300 1 1982 150 112 25 chr3 112041302 112041496 -115483082 - MSTA LTR MaLR -180 248 1 9128 169 14 30 chr3 112041496 112042824 -115481754 - MSTA-int LTR MaLR 0 1651 355 1462 127 45 0 chr3 112042824 112043044 -115481534 + MER30 DNA MER1_type 1 230 0 9128 169 14 30 chr3 112043044 112043394 -115481184 - MSTA-int LTR MaLR -1296 355 1 2608 139 27 2 chr3 112043394 112043805 -115480773 - MSTA LTR MaLR 0 428 8 1011 262 199 11 chr3 112043814 112044221 -115480357 - MLT1F1 LTR MaLR -54 513 22 713 330 69 2 chr3 112044343 112044792 -115479786 - L1M4 LINE L1 -1793 4353 3875 408 244 212 29 chr3 112045944 112046164 -115478414 - MIR SINE MIR 0 262 6 279 160 104 9 chr3 112047567 112047673 -115476905 + (TTTAA)n Simple_repeat Simple_repeat 1 116 0 23 78 0 0 chr3 112047673 112047724 -115476854 + AT_rich Low_complexity Low_complexity 1 51 0 635 272 134 69 chr3 112049811 112049921 -115474657 + L2 LINE L2 2592 2693 -620 521 38 0 25 chr3 112049921 112050000 -115474578 - L1PA4 LINE L1 0 6155 6079 635 272 134 69 chr3 112050000 112050563 -115474015 + L2 LINE L2 2693 3313 0 13932 179 26 24 chr3 112051050 112056953 -115467625 + L1MA3 LINE L1 1803 7724 0 1020 111 7 7 chr3 112057212 112057365 -115467213 + L1PB2 LINE L1 5997 6149 -2 3939 202 52 23 chr3 112057985 112059541 -115465037 - L1MB5 LINE L1 0 6672 4963 1104 258 104 58 chr3 112059540 112060079 -115464499 - L1MB5 LINE L1 -5969 573 10 * 1136 275 66 17 chr3 112060110 112060459 -115464119 - MLT1I LTR MaLR -33 376 11 180 297 141 0 chr3 112060720 112060784 -115463794 - L2 LINE L2 -2065 1249 1177 237 347 153 33 chr3 112061530 112061680 -115462898 + MIR3 SINE MIR 18 185 -23 243 368 43 8 chr3 112061694 112061811 -115462767 - L2 LINE L2 -936 2378 2258 5614 138 6 2 chr3 112062597 112063846 -115460732 - L1PA15 LINE L1 -7 6158 4912 2143 203 273 2 chr3 112063847 112064463 -115460115 + L1PA15 LINE L1 4125 4907 -1239 22 0 0 0 chr3 112065389 112065411 -115459167 + AT_rich Low_complexity Low_complexity 1 22 0 312 315 85 23 chr3 112066580 112066710 -115457868 - MIR SINE MIR -75 187 50 15214 37 0 0 chr3 112066962 112069568 -115455010 - L1PA14 LINE L1 -5 6156 3545 1673 188 0 0 chr3 112069679 112069998 -115454580 - L1P LINE L1 -947 5199 4881 * 2872 182 5 17 chr3 112069994 112070577 -115454001 - L1P LINE L1 -2416 3730 3155 826 255 36 135 chr3 112070612 112071267 -115453311 - L2 LINE L2 -37 3276 2677 1031 203 10 19 chr3 112071276 112071483 -115453095 - MSTD LTR MaLR -191 205 1 1175 170 76 0 chr3 112071512 112071736 -115452842 - Tigger5 DNA MER2_type -1 2322 2082 522 0 0 0 chr3 112072462 112072520 -115452058 + (CTAAA)n Simple_repeat Simple_repeat 3 60 0 5105 147 17 30 chr3 112072730 112072792 -115451786 - L1MA6 LINE L1 0 6300 6239 2010 109 4 0 chr3 112072792 112073066 -115451512 - AluSx SINE Alu -15 297 23 5105 147 17 30 chr3 112073066 112073929 -115450649 - L1MA6 LINE L1 -61 6239 5387 213 154 0 0 chr3 112074547 112074586 -115449992 + (TTCA)n Simple_repeat Simple_repeat 1 39 0 368 284 57 57 chr3 112074590 112074784 -115449794 - L2 LINE L2 -6 3307 3114 728 191 8 0 chr3 112075934 112076060 -115448518 + FLAM_C SINE Alu 5 131 -12 2224 192 43 11 chr3 112076408 112076851 -115447727 - MER39 LTR ERV1 0 707 251 3370 150 16 9 chr3 112077053 112077625 -115446953 + L1MA4 LINE L1 5443 6018 -282 754 273 126 24 chr3 112077678 112078180 -115446398 - Charlie7 DNA MER1_type -48 2564 2012 8299 40 7 0 chr3 112078189 112080001 -115444577 + L1PA5 LINE L1 4364 6181 0 56 0 0 0 chr3 112080030 112080086 -115444492 + AT_rich Low_complexity Low_complexity 1 56 0 24 67 0 0 chr3 112080127 112080172 -115444406 + AT_rich Low_complexity Low_complexity 1 45 0 345 24 0 0 chr3 112081202 112081244 -115443334 + (A)n Simple_repeat Simple_repeat 1 42 0 38 22 0 0 chr3 112081272 112081317 -115443261 + AT_rich Low_complexity Low_complexity 1 45 0 548 253 112 66 chr3 112081334 112081726 -115442852 - Charlie7 DNA MER1_type -612 2000 1591 285 200 93 79 chr3 112081742 112081882 -115442696 - Charlie7 DNA MER1_type -2431 181 40 711 283 164 45 chr3 112081897 112082317 -115442261 + LTR50 LTR ERVL 1 470 -325 476 302 54 9 chr3 112082310 112082532 -115442046 + LTR33A LTR ERVL 292 523 0 * 483 311 59 25 chr3 112082630 112083171 -115441407 + L1ME LINE L1 4978 5537 -629 275 49 24 0 chr3 112083453 112083494 -115441084 + (CAA)n Simple_repeat Simple_repeat 1 42 0 788 336 70 12 chr3 112083605 112084021 -115440557 - MLT1L LTR MaLR -162 453 14 491 196 0 0 chr3 112087008 112087110 -115437468 + L1MA8 LINE L1 6184 6285 -6 410 325 76 85 chr3 112087623 112088328 -115436250 - L2 LINE L2 0 3272 2554 1594 177 143 31 chr3 112088757 112089176 -115435402 + MLT1C LTR MaLR 1 466 -1 2138 106 7 0 chr3 112089295 112089587 -115434991 - AluSx SINE Alu -18 294 1 23 0 0 0 chr3 112090059 112090082 -115434496 + AT_rich Low_complexity Low_complexity 1 23 0 304 288 115 22 chr3 112090782 112090921 -115433657 + MIR3 SINE MIR 14 165 -43 22 35 0 0 chr3 112091911 112091940 -115432638 + AT_rich Low_complexity Low_complexity 1 29 0 367 200 187 20 chr3 112092034 112092184 -115432394 + MER53 DNA DNA 15 189 0 356 258 8 89 chr3 112092434 112092558 -115432020 + L2 LINE L2 3200 3313 0 806 216 11 11 chr3 112093474 112093655 -115430923 + L1MB2 LINE L1 5925 6105 -66 2427 51 3 0 chr3 112093714 112094010 -115430568 + AluY SINE Alu 1 297 -14 186 184 79 0 chr3 112094065 112094103 -115430475 - L2 LINE L2 0 3272 3232 1287 58 0 0 chr3 112094192 112094380 -115430198 + AluY SINE Alu 129 284 -27 417 93 13 53 chr3 112094593 112094668 -115429910 - MER51A LTR ERV1 -3 631 560 937 169 35 88 chr3 112094669 112095088 -115429490 - MER51A LTR ERV1 -20 614 1 1489 196 37 25 chr3 112095089 112095415 -115429163 - MER51A-int LTR ERV1 0 7816 7487 331 287 54 46 chr3 112095575 112095836 -115428742 - MER52-int LTR ERV1 -1810 4866 4604 344 243 10 3 chr3 112096466 112096574 -115428004 - MER52-int LTR ERV1 -5280 1811 1684 231 139 0 0 chr3 112096654 112096697 -115427881 - MLT2A1 LTR ERVL -8 436 394 192 125 0 0 chr3 112096702 112096734 -115427844 + (TA)n Simple_repeat Simple_repeat 2 33 0 7313 79 7 6 chr3 112096743 112097750 -115426828 - HERVL-A1 LTR ERVL -472 5182 4175 1351 65 76 0 chr3 112097749 112097933 -115426645 - HERVL-A1 LTR ERVL -2144 3510 3313 * 7526 81 3 31 chr3 112097931 112099025 -115425553 - HERVL-A1 LTR ERVL -3580 2074 1012 5089 86 0 6 chr3 112099030 112099728 -115424850 - HERVL-A1 LTR ERVL -4960 694 1 3092 83 35 14 chr3 112099728 112099764 -115424814 - MLT2A1 LTR ERVL 0 444 410 454 0 0 85 chr3 112099764 112099858 -115424720 + (TA)n Simple_repeat Simple_repeat 2 87 0 3092 83 35 14 chr3 112099858 112100256 -115424322 - MLT2A1 LTR ERVL -34 410 1 261 242 20 10 chr3 112100258 112100357 -115424221 - MER52-int LTR ERV1 -3335 950 851 525 205 12 62 chr3 112100562 112100723 -115423855 - MER52-int LTR ERV1 -7008 808 656 464 215 171 81 chr3 112101255 112101576 -115423002 + L1ME LINE L1 2881 3230 -2916 25 51 0 0 chr3 112101755 112101794 -115422784 + AT_rich Low_complexity Low_complexity 1 39 0 307 301 141 19 chr3 112102036 112102505 -115422073 + L1ME LINE L1 4019 4544 -1602 393 22 0 0 chr3 112102575 112102621 -115421957 + (TG)n Simple_repeat Simple_repeat 1 46 0 1563 174 91 0 chr3 112103217 112103590 -115420988 - MSTA LTR MaLR -21 407 1 431 301 88 35 chr3 112103594 112103933 -115420645 + L1ME LINE L1 4972 5328 -818 238 337 11 50 chr3 112103955 112104216 -115420362 + L1ME LINE L1 5358 5608 -554 1549 192 130 29 chr3 112104216 112104669 -115419909 - MLT1D LTR MaLR 0 505 7 2210 124 14 33 chr3 112104847 112105211 -115419367 - THE1B LTR MaLR -7 357 1 183 129 0 0 chr3 112105295 112105326 -115419252 + (TAGA)n Simple_repeat Simple_repeat 4 34 0 250 364 39 31 chr3 112105662 112105791 -115418787 + MIR SINE MIR 51 180 -82 1399 216 81 9 chr3 112107622 112107955 -115416623 + MLT1A1 LTR MaLR 1 357 -8 236 315 120 52 chr3 112107956 112108264 -115416314 + L2 LINE L2 1336 1664 -1650 508 324 120 8 chr3 112108312 112108679 -115415899 - L1M4 LINE L1 -747 5399 4992 234 290 12 49 chr3 112108878 112109040 -115415538 - L1M4 LINE L1 -1302 4844 4689 348 103 0 0 chr3 112109080 112109138 -115415440 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 9307 35 4 5 chr3 112109140 112111062 -115413516 - L1PA3 LINE L1 -9 6146 4222 329 125 45 57 chr3 112111175 112111263 -115413315 + L1MA8 LINE L1 6205 6291 0 203 356 115 19 chr3 112111503 112111607 -115412971 + L2 LINE L2 3134 3247 -25 566 335 25 0 chr3 112111702 112111905 -115412673 + L2 LINE L2 2679 2886 -428 3466 91 4 2 chr3 112112589 112113086 -115411492 - THE1A-int LTR MaLR -1082 498 1 1656 126 87 3 chr3 112113086 112113395 -115411183 - THE1A LTR MaLR 0 355 21 930 197 0 85 chr3 112113780 112113814 -115410764 - MSTB2 LTR MaLR -2 455 420 2016 178 87 8 chr3 112113814 112114207 -115410371 + MSTA LTR MaLR 1 424 -4 930 197 0 85 chr3 112114207 112114466 -115410112 - MSTB2 LTR MaLR -37 420 187 2806 60 0 0 chr3 112114986 112115354 -115409224 - L1P LINE L1 -1874 4272 3905 596 50 0 0 chr3 112115354 112115434 -115409144 + L1P LINE L1 3810 3889 -2257 * 6851 181 14 8 chr3 112115431 112117617 -115406961 - L1MA7 LINE L1 -209 6082 3883 759 212 209 48 chr3 112117643 112117978 -115406600 + MLT1E2 LTR MaLR 232 620 -6 201 213 0 0 chr3 112117981 112118028 -115406550 + (TA)n Simple_repeat Simple_repeat 1 47 0 257 314 87 31 chr3 112118028 112118257 -115406321 - L1M4c LINE L1 -4579 2028 1787 18415 175 29 31 chr3 112118300 112119816 -115404762 + L1M1 LINE L1 15 1533 -6032 294 29 0 0 chr3 112119816 112119851 -115404727 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 18415 175 29 31 chr3 112119851 112122404 -115402174 + L1M1 LINE L1 1533 4059 -3506 5612 103 15 38 chr3 112122404 112122617 -115401961 + L1MA1 LINE L1 5218 5434 -868 2220 122 3 0 chr3 112122617 112122912 -115401666 + AluSg SINE Alu 1 296 -14 5612 103 15 38 chr3 112122912 112123714 -115400864 + L1MA1 LINE L1 5434 6196 -106 32 43 0 0 chr3 112123714 112123760 -115400818 + AT_rich Low_complexity Low_complexity 1 46 0 584 286 69 27 chr3 112123900 112124348 -115400230 - L1M4c LINE L1 -4896 1532 1064 200 225 0 0 chr3 112124759 112124799 -115399779 + GA-rich Low_complexity Low_complexity 4 43 0 513 0 0 0 chr3 112124799 112124856 -115399722 + (TG)n Simple_repeat Simple_repeat 2 58 0 414 0 0 0 chr3 112125372 112125418 -115399160 + (T)n Simple_repeat Simple_repeat 1 46 0 23 0 0 0 chr3 112125438 112125461 -115399117 + GC_rich Low_complexity Low_complexity 1 23 0 44 0 0 0 chr3 112125521 112125565 -115399013 + GC_rich Low_complexity Low_complexity 1 44 0 22 0 0 0 chr3 112125565 112125587 -115398991 + AT_rich Low_complexity Low_complexity 1 22 0 636 104 31 0 chr3 112125979 112126075 -115398503 + THE1B LTR MaLR 53 151 -213 220 274 0 0 chr3 112127292 112127343 -115397235 - L2 LINE L2 -5 3308 3258 2246 104 53 28 chr3 112127634 112127989 -115396589 + THE1B LTR MaLR 1 364 0 1940 262 14 32 chr3 112128268 112128901 -115395677 + L1MCb LINE L1 3 624 -5421 37492 42 22 2 chr3 112128921 112134628 -115389950 - L1PA3 LINE L1 0 6155 332 2462 217 94 19 chr3 112134640 112136297 -115388281 + L1MCb LINE L1 616 2477 -4087 23 0 0 0 chr3 112136459 112136482 -115388096 + AT_rich Low_complexity Low_complexity 1 23 0 1763 158 4 4 chr3 112136646 112136924 -115387654 + AluSx SINE Alu 19 296 -16 339 44 0 0 chr3 112137005 112137050 -115387528 + (CA)n Simple_repeat Simple_repeat 2 46 0 6572 40 5 3 chr3 112137416 112138643 -115385935 + L1PA3 LINE L1 4879 6109 -46 219 218 26 26 chr3 112138843 112138921 -115385657 + GA-rich Low_complexity Low_complexity 3 80 0 2484 162 39 19 chr3 112139507 112140025 -115384553 - L1MA8 LINE L1 -6 6285 5758 3828 31 0 2 chr3 112140126 112140603 -115383975 - L1P LINE L1 -1766 4380 3905 358 123 0 31 chr3 112140594 112140659 -115383919 + L1P LINE L1 3804 3866 -2280 * 233 71 48 0 chr3 112140759 112140801 -115383777 - Alu SINE Alu -264 44 1 680 244 106 3 chr3 112140878 112141161 -115383417 - L1ME LINE L1 -599 5571 5260 832 307 125 26 chr3 112141369 112142493 -115382085 - L1ME LINE L1 -1189 4957 3723 250 211 0 0 chr3 112142832 112142884 -115381694 - MER117 DNA MER1_type -145 52 1 1546 228 104 17 chr3 112144293 112144832 -115379746 + L1MC/D LINE L1 4770 5355 -791 617 297 62 29 chr3 112144851 112145191 -115379387 + L1MEc LINE L1 1998 2348 -4048 324 267 170 5 chr3 112145235 112145441 -115379137 + L1MEc LINE L1 2418 2657 -3558 31409 65 4 1 chr3 112145841 112150710 -115373868 + L1PA6 LINE L1 1273 6148 -6 226 276 9 48 chr3 112151203 112151308 -115373270 + L1P LINE L1 5287 5387 -767 230 189 59 32 chr3 112151362 112151440 -115373138 + L1MC/D LINE L1 5665 5743 -435 2264 123 9 3 chr3 112151464 112151796 -115372782 + MER1A DNA MER1_type 196 529 0 7179 210 11 13 chr3 112152063 112153703 -115370875 - L1PA14 LINE L1 -2483 4366 2739 * 7340 155 12 94 chr3 112153702 112155592 -115368986 + L1PA14 LINE L1 4374 5962 -902 1683 87 0 0 chr3 112155592 112155799 -115368779 + AluSq SINE Alu 87 293 -20 7340 155 12 94 chr3 112155799 112156634 -115367944 + L1PA14 LINE L1 5962 6864 0 288 376 23 0 chr3 112157181 112157314 -115367264 + L2 LINE L2 3137 3272 0 437 311 81 7 chr3 112158134 112158341 -115366237 - MIR SINE MIR -44 218 1 1482 272 108 8 chr3 112159829 112160303 -115364275 + MLT1G1 LTR MaLR 75 595 0 890 194 34 0 chr3 112160462 112160637 -115363941 - MER82 DNA MER2_type -472 181 1 382 284 92 21 chr3 112161668 112161809 -115362769 - MIR3 SINE MIR -13 195 45 2832 10 0 0 chr3 112162603 112162911 -115361667 - AluY SINE Alu -3 308 1 680 355 96 20 chr3 112163487 112163944 -115360634 + L2 LINE L2 2817 3308 -5 210 346 24 55 chr3 112164837 112164964 -115359614 + L3 LINE CR1 160 282 -1295 403 238 73 46 chr3 112165044 112165195 -115359383 + MER103 DNA DNA 12 166 0 1146 279 114 39 chr3 112165229 112165669 -115358909 + L3 LINE CR1 597 1069 -508 1897 171 0 0 chr3 112165797 112166101 -115358477 + AluSg SINE Alu 1 304 -6 374 277 168 7 chr3 112166277 112166432 -115358146 - MIR SINE MIR -58 204 25 526 285 7 0 chr3 112166657 112166794 -115357784 - L2 LINE L2 0 3313 3176 1703 202 39 93 chr3 112166886 112167421 -115357157 - MLT1E1 LTR MaLR 0 654 149 553 188 156 16 chr3 112167495 112167623 -115356955 - MLT1E1 LTR MaLR -508 146 1 290 270 135 36 chr3 112167686 112167797 -115356781 - L2 LINE L2 0 3272 3151 1840 155 3 11 chr3 112167815 112168170 -115356408 + AluSx SINE Alu 1 353 0 530 357 75 4 chr3 112169948 112170189 -115354389 - L3 LINE CR1 -48 1529 1272 227 116 0 23 chr3 112170212 112170255 -115354323 + L1PA11 LINE L1 6133 6174 0 1074 225 63 97 chr3 112170711 112171075 -115353503 + MLT2B1 LTR ERVL 15 365 -49 225 94 0 0 chr3 112171075 112171107 -115353471 + (CATA)n Simple_repeat Simple_repeat 3 34 0 1074 225 63 97 chr3 112171107 112171156 -115353422 + MLT2B1 LTR ERVL 365 414 0 189 329 12 12 chr3 112171379 112171461 -115353117 + MIR3 SINE MIR 81 162 -46 22 0 0 0 chr3 112172437 112172459 -115352119 + AT_rich Low_complexity Low_complexity 1 22 0 2707 31 0 3 chr3 112172459 112172782 -115351796 - L1PA5 LINE L1 -8 6146 5825 2592 131 10 0 chr3 112172886 112173290 -115351288 + L1PA15 LINE L1 5758 6165 0 1514 177 30 10 chr3 112173290 112173586 -115350992 + L1MB2 LINE L1 5860 6164 -7 23 0 0 0 chr3 112173586 112173609 -115350969 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 112175003 112175024 -115349554 + AT_rich Low_complexity Low_complexity 1 21 0 2118 108 0 0 chr3 112175024 112175301 -115349277 - AluSx SINE Alu -21 291 15 192 40 0 0 chr3 112175409 112175434 -115349144 + (CA)n Simple_repeat Simple_repeat 2 26 0 24 53 0 0 chr3 112175493 112175531 -115349047 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr3 112175730 112175765 -115348813 + AT_rich Low_complexity Low_complexity 1 35 0 302 294 11 0 chr3 112176908 112177000 -115347578 + L1MC4 LINE L1 6611 6703 -1339 27 0 0 0 chr3 112177334 112177361 -115347217 + AT_rich Low_complexity Low_complexity 1 27 0 1571 180 30 0 chr3 112177448 112177715 -115346863 - AluJb SINE Alu -37 275 1 3696 0 0 0 chr3 112177771 112177815 -115346763 + L1MC2 LINE L1 5150 5196 -1148 3696 156 57 26 chr3 112177815 112178574 -115346004 + L1MC2 LINE L1 5554 6335 -9 3696 0 0 0 chr3 112178574 112178774 -115345804 + L1MC2 LINE L1 5196 6335 -9 324 192 39 13 chr3 112178789 112178867 -115345711 - L2 LINE L2 -7 3306 3227 268 297 113 28 chr3 112179045 112179328 -115345250 + L1ME LINE L1 5580 5886 -284 30 59 0 0 chr3 112179355 112179406 -115345172 + AT_rich Low_complexity Low_complexity 1 51 0 306 251 180 60 chr3 112180195 112180362 -115344216 - MER5A DNA MER1_type 0 189 3 212 267 0 0 chr3 112180684 112180729 -115343849 + CT-rich Low_complexity Low_complexity 3 47 0 1363 84 9 89 chr3 112180903 112181117 -115343461 - THE1C LTR MaLR -178 197 1 10093 113 7 60 chr3 112181117 112182786 -115341792 - THE1C-int LTR MaLR 0 1580 1 2080 126 36 41 chr3 112182787 112183151 -115341427 - THE1C LTR MaLR -1 374 13 275 59 0 0 chr3 112183152 112183186 -115341392 - THE1C LTR MaLR -341 34 1 211 318 70 23 chr3 112183238 112183367 -115341211 + L2 LINE L2 2578 2712 -602 537 239 68 0 chr3 112183489 112183606 -115340972 - FLAM_A SINE Alu -6 127 3 197 328 75 15 chr3 112183778 112183912 -115340666 + L2 LINE L2 3167 3308 -5 207 0 0 0 chr3 112184576 112184599 -115339979 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 2211 114 0 0 chr3 112184653 112184942 -115339636 + AluSc SINE Alu 1 289 -20 274 212 20 0 chr3 112185001 112185100 -115339478 + (TA)n Simple_repeat Simple_repeat 2 102 0 518 277 79 5 chr3 112185228 112185430 -115339148 - L1ME3A LINE L1 -312 5858 5642 275 49 24 0 chr3 112185434 112185475 -115339103 + (TA)n Simple_repeat Simple_repeat 2 43 0 386 64 0 0 chr3 112185475 112185522 -115339056 - AluJo SINE Alu -12 290 244 3354 237 69 48 chr3 112185622 112186100 -115338478 - L1 LINE L1 -770 6397 5930 1625 174 11 28 chr3 112186100 112186433 -115338145 - AluJb SINE Alu 0 334 7 3354 237 69 48 chr3 112186433 112188222 -115336356 - L1 LINE L1 -1237 5930 1539 25 0 0 0 chr3 112188485 112188510 -115336068 + AT_rich Low_complexity Low_complexity 1 25 0 515 357 15 19 chr3 112188518 112188843 -115335735 + L1MEc LINE L1 44 367 -6029 1201 290 136 27 chr3 112188935 112189061 -115335517 + L1MEc LINE L1 169 280 -5925 224 30 30 0 chr3 112189061 112189094 -115335484 + (TTG)n Simple_repeat Simple_repeat 2 35 0 1201 290 136 27 chr3 112189094 112189712 -115334866 + L1MEc LINE L1 280 994 -5211 970 238 35 0 chr3 112189955 112190157 -115334421 - MER58A DNA MER1_type -10 214 6 192 328 69 0 chr3 112191409 112191467 -115333111 + L2 LINE L2 3192 3253 -19 580 308 92 8 chr3 112192800 112193040 -115331538 + MIR SINE MIR 3 262 0 2144 113 3 3 chr3 112193545 112193845 -115330733 + AluSx SINE Alu 1 300 -12 231 322 93 22 chr3 112194089 112194265 -115330313 - MIR3 SINE MIR -56 206 15 1504 186 12 0 chr3 112194303 112194545 -115330033 - AluJo SINE Alu -62 250 6 28 38 0 19 chr3 112196026 112196045 -115328533 + AT_rich Low_complexity Low_complexity 1 19 -33 1612 197 10 14 chr3 112196045 112196339 -115328239 + AluJb SINE Alu 1 293 -19 28 38 0 19 chr3 112196339 112196372 -115328206 + AT_rich Low_complexity Low_complexity 19 52 0 2284 128 120 5 chr3 112196581 112196965 -115327613 + MSTA LTR MaLR 1 428 0 369 0 0 0 chr3 112197011 112197052 -115327526 + (TA)n Simple_repeat Simple_repeat 2 42 0 404 244 164 52 chr3 112199108 112199358 -115325220 - L2 LINE L2 0 3313 3036 180 0 0 0 chr3 112199420 112199440 -115325138 + (TTTTA)n Simple_repeat Simple_repeat 4 23 0 189 306 0 16 chr3 112199594 112199656 -115324922 - MIR SINE MIR -170 92 32 2271 111 0 7 chr3 112199916 112200222 -115324356 - AluSg SINE Alu -6 304 1 257 174 0 0 chr3 112200652 112200698 -115323880 - L3b LINE CR1 -9 1574 1529 183 227 23 0 chr3 112200681 112200725 -115323853 + L3 LINE CR1 333 377 -1200 * 1993 124 3 3 chr3 112200963 112201253 -115323325 + AluSx SINE Alu 12 301 -11 1911 131 7 3 chr3 112201324 112201629 -115322949 + AluSq SINE Alu 1 306 -7 2113 107 3 3 chr3 112201883 112202172 -115322406 + AluSp SINE Alu 12 300 -13 876 230 5 29 chr3 112205945 112206154 -115318424 + MIR SINE MIR 16 219 -43 29 60 0 0 chr3 112207228 112207278 -115317300 + AT_rich Low_complexity Low_complexity 1 50 0 2086 209 39 16 chr3 112207552 112208046 -115316532 + MLT1D LTR MaLR 1 505 0 8314 35 0 0 chr3 112208663 112209687 -115314891 - L1PA3 LINE L1 -2138 4008 2985 6036 21 0 0 chr3 112209684 112210384 -115314194 + L1PA3 LINE L1 4003 4702 -1444 * 6917 15 8 0 chr3 112210384 112211173 -115313405 + L1PA3 LINE L1 5355 6155 0 199 396 45 27 chr3 112211443 112211554 -115313024 + L2 LINE L2 3132 3244 -28 225 279 198 9 chr3 112211817 112211928 -115312650 - MIR SINE MIR -84 178 47 246 311 184 0 chr3 112211984 112212087 -115312491 + L2 LINE L2 3151 3272 0 350 244 8 124 chr3 112212199 112212332 -115312246 + MER5B DNA MER1_type 7 137 -52 1157 148 59 0 chr3 112212595 112212798 -115311780 + L1PA10 LINE L1 5954 6168 0 190 327 40 40 chr3 112213128 112213229 -115311349 - MER5B DNA MER1_type -77 101 1 552 100 0 0 chr3 112214464 112214544 -115310034 - MADE1 DNA Mariner 0 80 1 5622 112 11 41 chr3 112215157 112216534 -115308044 - L1PA13 LINE L1 -7 6156 4788 286 335 48 28 chr3 112216741 112216966 -115307612 + MIR SINE MIR 34 262 0 359 316 115 11 chr3 112217068 112217242 -115307336 - MIR SINE MIR -18 244 53 3962 217 47 24 chr3 112217551 112218260 -115306318 - HSMAR1 DNA Mariner -5 1282 558 26 50 0 0 chr3 112218497 112218537 -115306041 + AT_rich Low_complexity Low_complexity 1 40 0 318 293 78 24 chr3 112218547 112218714 -115305864 - MLT1F LTR MaLR 0 542 367 5168 15 0 5 chr3 112218739 112219367 -115305211 - L1PA2 LINE L1 0 6155 5556 419 136 0 0 chr3 112219375 112219441 -115305137 - HSMAR1 DNA Mariner -733 554 489 * 2731 90 0 5 chr3 112219438 112219816 -115304762 - HSMAR1 DNA Mariner -911 376 1 252 0 0 0 chr3 112219916 112219944 -115304634 + (TG)n Simple_repeat Simple_repeat 1 28 0 299 333 20 0 chr3 112220741 112220840 -115303738 - L2 LINE L2 -56 3216 3116 376 333 65 90 chr3 112221970 112222369 -115302209 - L2 LINE L2 0 3272 2884 315 338 41 14 chr3 112222504 112222649 -115301929 - MIR SINE MIR -108 154 6 333 47 0 0 chr3 112223819 112223862 -115300716 + (CA)n Simple_repeat Simple_repeat 2 44 0 11315 189 38 51 chr3 112224043 112226439 -115298139 + L1M1 LINE L1 1 2364 -4485 3356 223 19 32 chr3 112226422 112227356 -115297222 + L1M1 LINE L1 3053 3974 -2874 * 22 80 0 0 chr3 112227470 112227520 -115297058 + AT_rich Low_complexity Low_complexity 1 50 0 25 31 0 0 chr3 112227704 112227736 -115296842 + AT_rich Low_complexity Low_complexity 1 32 0 1715 64 0 0 chr3 112227852 112228071 -115296507 + L1PA5 LINE L1 5931 6149 -5 6166 65 2 0 chr3 112228288 112229082 -115295496 + L1PA7 LINE L1 5359 6154 0 4376 169 22 8 chr3 112229088 112230153 -115294425 + L1M1 LINE L1 5174 6245 -743 1670 206 45 45 chr3 112230186 112230347 -115294231 + L1MDa LINE L1 1518 1678 -4862 180 0 0 0 chr3 112230347 112230367 -115294211 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1670 206 45 45 chr3 112230367 112230696 -115293882 + L1MDa LINE L1 1677 2008 -4532 340 296 48 10 chr3 112231375 112231581 -115292997 - L1MC5 LINE L1 -35 7926 7713 1180 183 125 48 chr3 112231608 112232001 -115292577 + Charlie1b DNA MER1_type 27 449 -74 4737 154 16 7 chr3 112232001 112232857 -115291721 + L1MA3 LINE L1 5342 6205 -100 23 33 0 0 chr3 112232887 112232917 -115291661 + AT_rich Low_complexity Low_complexity 1 30 0 236 224 52 0 chr3 112232917 112232975 -115291603 + Charlie1b DNA MER1_type 456 516 -7 2579 95 16 0 chr3 112233054 112233421 -115291157 - L1PA13 LINE L1 -1 6162 5790 373 171 57 0 chr3 112233422 112233510 -115291068 - L1P LINE L1 -2211 3935 3843 2433 67 0 0 chr3 112234409 112234706 -115289872 - AluY SINE Alu -14 297 1 510 165 10 52 chr3 112234847 112234944 -115289634 - MER2 DNA MER2_type -2 343 251 293 228 0 0 chr3 112234929 112234986 -115289592 + MER2 DNA MER2_type 65 121 -224 * 318 237 0 13 chr3 112234994 112235070 -115289508 - MER8 DNA MER2_type -164 75 1 249 377 61 0 chr3 112235324 112235438 -115289140 - L2 LINE L2 -213 3059 2939 796 320 123 16 chr3 112235974 112236715 -115287863 + L2 LINE L2 2496 3312 -1 211 326 61 10 chr3 112237643 112237741 -115286837 + MIR SINE MIR 153 255 -7 494 300 27 42 chr3 112238077 112238355 -115286223 + L1ME LINE L1 5444 5689 -432 270 0 0 0 chr3 112238364 112238394 -115286184 + (CA)n Simple_repeat Simple_repeat 1 30 0 34 72 0 0 chr3 112238510 112238579 -115285999 + AT_rich Low_complexity Low_complexity 1 69 0 487 279 86 77 chr3 112240165 112240398 -115284180 - MIR SINE MIR -23 239 5 4059 219 22 74 chr3 112240578 112240788 -115283790 + L1MD1 LINE L1 4231 4450 -1792 339 43 0 0 chr3 112240788 112240834 -115283744 - MADE1 DNA Mariner 0 80 35 4059 219 22 74 chr3 112240834 112240977 -115283601 + L1MD1 LINE L1 4450 4599 -1643 1843 117 25 11 chr3 112240977 112241260 -115283318 + AluSx SINE Alu 1 287 -25 4059 219 22 74 chr3 112241260 112242963 -115281615 + L1MD1 LINE L1 4599 6234 -8 1747 104 48 0 chr3 112242978 112243227 -115281351 - AluY SINE Alu -14 297 37 226 351 58 32 chr3 112243247 112243401 -115281177 + MIR3 SINE MIR 36 193 -15 206 281 62 0 chr3 112244416 112244480 -115280098 - L2 LINE L2 0 3313 3246 2602 162 28 50 chr3 112246031 112246567 -115278011 + LTR5 LTR ERVK 446 969 0 2050 275 41 38 chr3 112246600 112247495 -115277083 - L1MCb LINE L1 -5145 900 3 311 276 10 0 chr3 112247657 112247755 -115276823 + L1MC4 LINE L1 6952 7050 -992 1871 256 69 15 chr3 112247896 112248645 -115275933 + L1MC4 LINE L1 7096 7885 -157 22 35 0 0 chr3 112249097 112249126 -115275452 + AT_rich Low_complexity Low_complexity 1 29 0 344 277 62 99 chr3 112250208 112250450 -115274128 + MIR SINE MIR 21 253 -9 27 87 0 0 chr3 112250933 112251002 -115273576 + AT_rich Low_complexity Low_complexity 1 69 0 186 43 0 0 chr3 112253628 112253651 -115270927 + (TAA)n Simple_repeat Simple_repeat 2 24 0 1118 207 5 109 chr3 112253819 112254215 -115270363 + L1MD2 LINE L1 5980 6334 -25 303 212 15 15 chr3 112254322 112254388 -115270190 + MLT1F LTR MaLR 146 211 -331 270 298 123 9 chr3 112255088 112255202 -115269376 - MIR SINE MIR -130 132 6 4275 136 45 8 chr3 112255670 112256429 -115268149 + L1PB3 LINE L1 5368 6154 0 42 36 0 0 chr3 112257728 112257784 -115266794 + AT_rich Low_complexity Low_complexity 1 56 0 415 340 19 9 chr3 112258147 112258359 -115266219 - MIR SINE MIR 0 262 49 357 165 139 0 chr3 112258362 112258441 -115266137 + MLT1B LTR MaLR 1 90 -300 30 27 0 0 chr3 112258565 112258602 -115265976 + AT_rich Low_complexity Low_complexity 1 37 0 317 185 0 0 chr3 112258869 112258923 -115265655 + Tigger5 DNA MER2_type 1 54 -2269 366 230 35 0 chr3 112258931 112259018 -115265560 + Tigger5 DNA MER2_type 2234 2323 0 394 321 106 38 chr3 112259780 112260017 -115264561 + MIR SINE MIR 6 258 -4 896 321 127 12 chr3 112260217 112260635 -115263943 - L2 LINE L2 -10 3303 2838 450 341 75 38 chr3 112260848 112261421 -115263157 - ERVL LTR ERVL -368 5286 4727 937 222 56 19 chr3 112261421 112261637 -115262941 - MER58A DNA MER1_type 0 224 1 450 341 75 38 chr3 112261637 112261770 -115262808 - ERVL LTR ERVL -927 4727 4600 399 350 108 0 chr3 112261945 112262159 -115262419 - ERVL LTR ERVL -1314 4340 4104 2393 275 58 40 chr3 112262322 112263248 -115261330 - ERVL LTR ERVL -1905 3091 2149 1269 295 31 31 chr3 112263289 112263887 -115260691 - ERVL LTR ERVL -2930 2066 1473 1569 331 31 2 chr3 112263910 112264520 -115260058 - ERVL LTR ERVL -3660 1336 709 673 313 49 25 chr3 112264729 112265161 -115259417 - ERVL LTR ERVL -4546 450 9 998 316 24 17 chr3 112265175 112265590 -115258988 - LTR16A LTR ERVL -6 444 27 636 307 23 0 chr3 112267055 112267231 -115257347 - MIR SINE MIR -81 181 2 1725 185 158 49 chr3 112267477 112267926 -115256652 - MLT2B2 LTR ERVL 0 515 18 3594 105 31 90 chr3 112268228 112268973 -115255605 - THE1B-int LTR MaLR -879 701 1 1880 144 46 29 chr3 112269004 112269352 -115255226 - THE1B LTR MaLR -10 354 1 1497 345 86 11 chr3 112269353 112270125 -115254453 + L2 LINE L2 2328 3165 -148 181 175 82 134 chr3 112270129 112270226 -115254352 + L2 LINE L2 3139 3230 -83 360 296 54 45 chr3 112272110 112272648 -115251930 + L1ME LINE L1 544 1086 -4984 5701 84 6 1 chr3 112273019 112273807 -115250771 + L1PA7 LINE L1 5363 6154 0 1132 203 10 27 chr3 112273813 112274114 -115250464 + L1 LINE L1 4472 4767 -1379 278 161 23 35 chr3 112274781 112274868 -115249710 + (GGGTG)n Simple_repeat Simple_repeat 3 88 0 23 33 0 0 chr3 112275380 112275410 -115249168 + GC_rich Low_complexity Low_complexity 1 30 0 200 161 16 0 chr3 112275422 112275484 -115249094 + G-rich Low_complexity Low_complexity 3 65 0 380 304 25 19 chr3 112275614 112275772 -115248806 - LTR16A1 LTR ERVL -100 357 199 352 321 0 36 chr3 112276693 112276830 -115247748 + G-rich Low_complexity Low_complexity 1 132 0 500 323 102 16 chr3 112277055 112277309 -115247269 + ERVL LTR ERVL 4105 4380 -1384 468 313 60 35 chr3 112277383 112278208 -115246370 + L1M4 LINE L1 3498 4366 -1780 601 279 31 26 chr3 112278519 112278748 -115245830 - L1MC4 LINE L1 -17 8025 7796 2204 91 7 7 chr3 112278750 112279037 -115245541 - AluSp SINE Alu -6 307 21 1541 170 76 11 chr3 112279078 112279354 -115245224 - AluJb SINE Alu -18 294 1 35 54 0 0 chr3 112279929 112279985 -115244593 + AT_rich Low_complexity Low_complexity 1 56 0 428 335 19 9 chr3 112280348 112280560 -115244018 - MIR SINE MIR 0 262 49 346 177 139 0 chr3 112280563 112280642 -115243936 + MLT1B LTR MaLR 1 90 -300 23 54 0 0 chr3 112280766 112280803 -115243775 + AT_rich Low_complexity Low_complexity 1 37 0 903 228 70 19 chr3 112281175 112281487 -115243091 - L1MC4 LINE L1 -619 7423 7096 321 276 10 0 chr3 112281628 112281726 -115242852 - L1MC4 LINE L1 -992 7050 6952 307 299 52 15 chr3 112281876 112282010 -115242568 + L1MCa LINE L1 28 166 -6260 398 262 6 54 chr3 112282173 112282549 -115242029 + C-rich Low_complexity Low_complexity 1 358 0 384 331 8 8 chr3 112284132 112284256 -115240322 - L2 LINE L2 0 3313 3190 2176 120 10 0 chr3 112286014 112286305 -115238273 + AluSx SINE Alu 1 294 -18 340 43 21 0 chr3 112286305 112286352 -115238226 + (TA)n Simple_repeat Simple_repeat 2 49 0 362 250 96 40 chr3 112286362 112286579 -115237999 + L1MB8 LINE L1 5644 5881 -297 7070 63 1 1 chr3 112286712 112287683 -115236895 - L1P LINE L1 -3092 3054 2084 360 381 0 0 chr3 112287840 112288016 -115236562 + C-rich Low_complexity Low_complexity 1 176 0 21 0 0 0 chr3 112288128 112288149 -115236429 + GC_rich Low_complexity Low_complexity 1 21 0 226 351 58 32 chr3 112289287 112289441 -115235137 - MIR3 SINE MIR -15 193 36 1694 112 8 47 chr3 112289461 112289767 -115234811 + AluSp SINE Alu 37 332 0 331 256 20 75 chr3 112289827 112289972 -115234606 - MIR3 SINE MIR -24 184 47 1505 204 27 3 chr3 112290412 112290746 -115233832 - L1MB4 LINE L1 0 6180 5839 371 380 0 12 chr3 112291885 112292101 -115232477 + C-rich Low_complexity Low_complexity 1 213 0 2536 213 31 49 chr3 112293710 112294741 -115229837 + L1M3e LINE L1 1616 2616 -4491 24 53 0 0 chr3 112295963 112296001 -115228577 + AT_rich Low_complexity Low_complexity 1 38 0 953 153 62 14 chr3 112296151 112296360 -115228218 + L1PA13 LINE L1 5938 6156 -7 539 123 0 12 chr3 112296972 112297053 -115227525 + MADE1 DNA Mariner 1 80 0 500 133 31 141 chr3 112297310 112297438 -115227140 + MSTA LTR MaLR 262 428 0 340 323 142 8 chr3 112297504 112297758 -115226820 + L1M3e LINE L1 3479 3766 -3340 272 79 0 0 chr3 112297760 112297798 -115226780 + L1MA2 LINE L1 5911 5948 -354 725 165 0 9 chr3 112297803 112297918 -115226660 + AluJb SINE Alu 5 118 -194 23 55 0 18 chr3 112297918 112297939 -115226639 + AT_rich Low_complexity Low_complexity 1 21 -33 1912 96 47 75 chr3 112297939 112298323 -115226255 + L1MA2 LINE L1 5932 6304 0 23 55 0 18 chr3 112298323 112298356 -115226222 + AT_rich Low_complexity Low_complexity 21 54 0 22 0 0 0 chr3 112298366 112298388 -115226190 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 112299632 112299654 -115224924 + GC_rich Low_complexity Low_complexity 1 22 0 680 164 79 101 chr3 112299919 112299963 -115224615 - MLT1C LTR MaLR -155 235 192 411 21 0 0 chr3 112299963 112300011 -115224567 + (TG)n Simple_repeat Simple_repeat 1 48 0 1939 129 7 0 chr3 112300011 112300289 -115224289 - AluSq SINE Alu -33 280 1 680 164 79 101 chr3 112300289 112300482 -115224096 - MLT1C LTR MaLR -196 194 7 291 240 0 0 chr3 112301980 112302084 -115222494 + C-rich Low_complexity Low_complexity 1 104 0 328 293 14 27 chr3 112302204 112302374 -115222204 + C-rich Low_complexity Low_complexity 1 167 0 1255 136 58 19 chr3 112302828 112303034 -115221544 + L1PA10 LINE L1 5954 6167 -1 554 214 0 40 chr3 112303908 112304034 -115220544 - MIR3 SINE MIR -1 207 87 514 265 92 57 chr3 112304437 112304720 -115219858 - MLT1G1 LTR MaLR -5 590 298 338 286 94 4 chr3 112304816 112305071 -115219507 - AluJb SINE Alu -3 299 22 21573 39 0 1 chr3 112305173 112308461 -115216117 + L1PA4 LINE L1 2881 6155 0 5246 171 23 4 chr3 112308463 112309432 -115215146 - L1 LINE L1 -1919 5646 4660 3574 205 102 24 chr3 112309425 112310703 -115213875 - L1 LINE L1 -5501 2064 16 * 264 357 39 0 chr3 112310765 112310894 -115213684 + L2 LINE L2 2514 2647 -667 593 303 38 32 chr3 112310961 112311108 -115213470 + L1MC/D LINE L1 5298 5443 -1161 261 0 0 0 chr3 112311108 112311137 -115213441 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 593 303 38 32 chr3 112311137 112311424 -115213154 + L1MC/D LINE L1 5443 5732 -872 26 64 0 0 chr3 112311446 112311493 -115213085 + AT_rich Low_complexity Low_complexity 1 47 0 300 252 55 8 chr3 112311921 112312048 -115212530 + (TATATG)n Simple_repeat Simple_repeat 5 137 0 21 0 0 0 chr3 112312357 112312378 -115212200 + AT_rich Low_complexity Low_complexity 1 21 0 379 311 67 14 chr3 112312665 112312874 -115211704 + L1MEd LINE L1 1177 1396 -4976 228 284 49 12 chr3 112312899 112312980 -115211598 + L1MEd LINE L1 1632 1715 -4669 21 104 0 0 chr3 112313080 112313157 -115211421 + AT_rich Low_complexity Low_complexity 1 77 0 280 297 113 32 chr3 112313490 112313804 -115210774 + L1MEd LINE L1 2351 2638 -3744 1924 162 149 11 chr3 112313804 112314180 -115210398 + MSTA LTR MaLR 1 428 0 280 297 113 32 chr3 112314180 112314431 -115210147 + L1MEd LINE L1 2638 2962 -3420 272 79 0 0 chr3 112314502 112314540 -115210038 + L1MA2 LINE L1 5911 5948 -356 725 165 0 9 chr3 112314545 112314660 -115209918 + AluJb SINE Alu 5 118 -194 25 53 0 18 chr3 112314660 112314681 -115209897 + AT_rich Low_complexity Low_complexity 1 21 -35 2260 94 40 43 chr3 112314681 112315055 -115209523 + L1MA2 LINE L1 5932 6304 0 25 53 0 18 chr3 112315055 112315090 -115209488 + AT_rich Low_complexity Low_complexity 21 56 0 629 305 30 6 chr3 112315126 112315464 -115209114 + L1MEd LINE L1 3088 3433 -2949 1902 112 26 8 chr3 112315517 112315785 -115208793 + AluSq SINE Alu 14 286 -27 21 0 0 0 chr3 112315873 112315894 -115208684 + AT_rich Low_complexity Low_complexity 1 21 0 1939 208 25 23 chr3 112315940 112316475 -115208103 + L1MB5 LINE L1 5152 5679 -499 904 169 0 32 chr3 112316484 112316638 -115207940 + FRAM SINE Alu 23 171 -5 2175 209 4 43 chr3 112316660 112317143 -115207435 + L1MB5 LINE L1 5702 6165 -9 296 102 61 0 chr3 112317458 112317507 -115207071 + L1MDb LINE L1 1261 1312 -5097 1343 220 34 38 chr3 112318053 112318344 -115206234 - AluJo SINE Alu -12 290 1 1619 235 88 37 chr3 112318344 112318847 -115205731 - MER21B LTR ERV1 -60 803 272 1088 293 67 19 chr3 112318935 112319352 -115205226 - HERV16 LTR ERVL -4080 916 480 3418 105 6 0 chr3 112319477 112319943 -115204635 + THE1B-int LTR MaLR 1112 1580 0 2215 139 76 17 chr3 112319943 112320287 -115204291 + THE1B LTR MaLR 1 364 0 1577 125 54 30 chr3 112320595 112320921 -115203657 + MLT1B LTR MaLR 3 389 -1 192 179 0 0 chr3 112320946 112320985 -115203593 + GA-rich Low_complexity Low_complexity 2 40 0 223 287 99 30 chr3 112321067 112321168 -115203410 - MIR3 SINE MIR -22 186 79 566 202 54 23 chr3 112321281 112321468 -115203110 + FLAM_C SINE Alu 9 199 0 303 71 0 0 chr3 112322514 112322556 -115202022 + (CA)n Simple_repeat Simple_repeat 1 42 0 325 311 127 28 chr3 112322940 112323211 -115201367 + L2 LINE L2 2776 3062 -210 1854 237 72 64 chr3 112323833 112324412 -115200166 - MLT1E2 LTR MaLR -42 584 1 181 333 0 0 chr3 112324967 112325018 -115199560 + L2 LINE L2 3240 3290 -23 1473 334 114 19 chr3 112325355 112326241 -115198337 - L2 LINE L2 0 3313 2328 2052 138 46 29 chr3 112326242 112326590 -115197988 + THE1B LTR MaLR 1 354 -10 10361 104 6 83 chr3 112326621 112328334 -115196244 + THE1B-int LTR MaLR 1 1580 0 2096 136 40 67 chr3 112328334 112328502 -115196076 + THE1B LTR MaLR 1 172 -192 2388 89 0 3 chr3 112328502 112328805 -115195773 + AluY SINE Alu 1 302 -9 2096 136 40 67 chr3 112328805 112329010 -115195568 + THE1B LTR MaLR 172 364 0 980 314 24 127 chr3 112329010 112329353 -115195225 - L2 LINE L2 -983 2331 2091 2094 98 0 0 chr3 112329353 112329617 -115194961 + AluY SINE Alu 23 286 -25 980 314 24 127 chr3 112329617 112329952 -115194626 - L2 LINE L2 -1223 2091 1723 226 389 49 0 chr3 112330127 112330289 -115194289 - MIR3 SINE MIR -7 201 32 5658 97 32 5 chr3 112331003 112331817 -115192761 - L1PB1 LINE L1 0 6151 5316 1286 80 12 0 chr3 112331818 112331980 -115192598 - L1PA10 LINE L1 0 6168 6005 4400 160 13 15 chr3 112331980 112332836 -115191742 - L1PB1 LINE L1 -1080 5066 4213 * 16396 58 3 1 chr3 112332834 112334875 -115189703 + L1P LINE L1 699 2744 -3402 244 154 0 19 chr3 112334986 112335038 -115189540 + HSMAR1 DNA Mariner 1232 1282 -5 286 294 49 10 chr3 112335726 112335848 -115188730 - MIR SINE MIR -67 141 34 7201 68 10 1 chr3 112336055 112337439 -115187139 + L1PA7 LINE L1 4788 6154 0 225 185 130 0 chr3 112337728 112337782 -115186796 - L1M4 LINE L1 -3304 2842 2782 * 1031 301 100 23 chr3 112337781 112338563 -115186015 + L1M4 LINE L1 3018 3888 -2258 * 1157 241 89 111 chr3 112338555 112338747 -115185831 + L1M4 LINE L1 4257 4452 -1694 2212 181 38 35 chr3 112338747 112339199 -115185379 - MSTB2 LTR MaLR -4 453 1 1157 241 89 111 chr3 112339199 112339934 -115184644 + L1M4 LINE L1 4452 5164 -982 1010 261 179 15 chr3 112340726 112341067 -115183511 - LTR16A LTR ERVL -2 448 52 774 339 95 23 chr3 112341195 112341860 -115182718 + L2 LINE L2 2330 3049 -264 681 308 80 62 chr3 112341950 112342415 -115182163 + LTR67 LTR ERVL 67 539 -18 182 352 19 38 chr3 112342543 112342648 -115181930 + L2 LINE L2 3123 3225 -47 * 311 323 48 8 chr3 112342641 112342765 -115181813 - L2 LINE L2 -1 3312 3184 23 0 0 0 chr3 112343710 112343733 -115180845 + AT_rich Low_complexity Low_complexity 1 23 0 381 296 13 22 chr3 112344777 112344929 -115179649 + MIR3 SINE MIR 57 208 0 228 35 0 0 chr3 112345517 112345546 -115179032 + (TAA)n Simple_repeat Simple_repeat 1 29 0 23 0 0 0 chr3 112345950 112345973 -115178605 + AT_rich Low_complexity Low_complexity 1 23 0 1078 277 139 24 chr3 112346645 112347143 -115177435 - L1ME LINE L1 -360 6605 6051 1066 244 90 110 chr3 112347162 112347898 -115176680 - L1ME LINE L1 -979 5962 5246 2019 184 35 33 chr3 112347898 112348350 -115176228 + MSTB2 LTR MaLR 1 453 -4 1066 244 90 110 chr3 112348350 112348542 -115176036 - L1ME LINE L1 -1695 5246 5052 944 298 102 23 chr3 112348534 112349315 -115175263 - L1ME LINE L1 -2258 4683 3813 * 6843 64 35 0 chr3 112349657 112350604 -115173974 - L1PA7 LINE L1 0 6154 5199 520 300 95 27 chr3 112350604 112351630 -115172948 - L1MCc LINE L1 -4512 2429 1175 348 324 129 18 chr3 112353701 112353871 -115170707 + L2 LINE L2 2901 3089 -183 208 240 0 20 chr3 112354027 112354077 -115170501 + GA-rich Low_complexity Low_complexity 3 51 0 2055 142 0 0 chr3 112354533 112354829 -115169749 + AluY SINE Alu 1 296 -15 222 392 16 7 chr3 112355008 112355144 -115169434 - MIR SINE MIR -64 144 7 827 242 56 5 chr3 112355448 112355646 -115168932 + MLT1I LTR MaLR 3 210 -199 228 67 0 0 chr3 112355672 112355702 -115168876 + (T)n Simple_repeat Simple_repeat 1 30 0 250 244 122 61 chr3 112355798 112355913 -115168665 + MLT1I LTR MaLR 288 409 0 1177 239 57 58 chr3 112356037 112356561 -115168017 + MER39 LTR ERV1 1 707 0 952 205 88 5 chr3 112359250 112359465 -115165113 + L1MA8 LINE L1 88 320 -6710 3152 257 59 42 chr3 112359467 112362488 -115162090 + L1MA8 LINE L1 857 3614 -3492 1414 209 30 70 chr3 112362490 112362863 -115161715 + L1MA1 LINE L1 14 371 -7194 * 14141 168 19 17 chr3 112362838 112365219 -115159359 + L1MA1 LINE L1 3734 6135 -1586 2564 111 5 3 chr3 112365219 112365589 -115158989 - THE1C LTR MaLR -2 373 3 14141 168 19 17 chr3 112365589 112367177 -115157401 + L1MA1 LINE L1 6135 7717 -4 12142 187 47 15 chr3 112367186 112367585 -115156993 + L1MA8 LINE L1 3599 3984 -3267 2377 64 10 0 chr3 112367585 112367882 -115156696 + AluY SINE Alu 1 300 -11 12142 187 47 15 chr3 112367882 112370485 -115154093 + L1MA8 LINE L1 3984 6504 -747 240 35 0 0 chr3 112370485 112370514 -115154064 + (CA)n Simple_repeat Simple_repeat 2 30 0 12142 187 47 15 chr3 112370514 112370580 -115153998 + L1MA8 LINE L1 6504 6566 -685 258 32 0 0 chr3 112370580 112370611 -115153967 + (CA)n Simple_repeat Simple_repeat 2 32 0 12142 187 47 15 chr3 112370611 112371072 -115153506 + L1MA8 LINE L1 6566 7241 -10 30 45 0 0 chr3 112371077 112371121 -115153457 + AT_rich Low_complexity Low_complexity 1 44 0 225 306 31 20 chr3 112371161 112371259 -115153319 - MIR SINE MIR -64 198 100 185 225 101 56 chr3 112371651 112371740 -115152838 - L2 LINE L2 -2092 1222 1130 180 0 0 0 chr3 112371985 112372005 -115152573 + (GGGA)n Simple_repeat Simple_repeat 2 21 0 309 26 0 0 chr3 112372102 112372140 -115152438 + (GA)n Simple_repeat Simple_repeat 1 38 0 180 0 0 0 chr3 112372475 112372495 -115152083 + (T)n Simple_repeat Simple_repeat 1 20 0 472 274 91 76 chr3 112372706 112373191 -115151387 - MLT1J LTR MaLR -19 492 1 261 274 127 32 chr3 112373198 112373355 -115151223 + L2 LINE L2 3125 3296 -17 190 329 0 49 chr3 112373683 112373765 -115150813 - MIR SINE MIR -148 114 37 224 59 29 0 chr3 112373987 112374021 -115150557 + (CTGTG)n Simple_repeat Simple_repeat 2 36 0 193 254 63 0 chr3 112375128 112375191 -115149387 + L2 LINE L2 1645 1711 -1603 529 311 46 26 chr3 112375233 112375539 -115149039 + HsTC2 DNA Tc2 496 807 -1091 379 353 74 32 chr3 112375871 112376154 -115148424 - L2 LINE L2 -172 3100 2806 34 0 0 0 chr3 112377185 112377219 -115147359 + AT_rich Low_complexity Low_complexity 1 34 0 216 0 0 0 chr3 112378722 112378746 -115145832 + (T)n Simple_repeat Simple_repeat 1 24 0 722 328 44 40 chr3 112378877 112379127 -115145451 - MIR SINE MIR -10 252 2 477 299 25 13 chr3 112381589 112381746 -115142832 - LTR16A1 LTR ERVL -100 357 199 276 247 45 34 chr3 112382405 112382494 -115142084 - MIR SINE MIR -171 91 2 457 288 12 31 chr3 112384474 112384637 -115139941 + MER103 DNA DNA 6 165 -1 2398 104 0 0 chr3 112384646 112384955 -115139623 - AluSg SINE Alu -1 309 1 191 253 93 67 chr3 112385007 112385082 -115139496 + MIR3 SINE MIR 132 208 0 240 111 0 0 chr3 112387259 112387295 -115137283 + (A)n Simple_repeat Simple_repeat 1 36 0 389 176 27 0 chr3 112387707 112387781 -115136797 + MIR3 SINE MIR 133 208 0 1715 146 92 13 chr3 112388184 112388500 -115136078 + MLT1A1 LTR MaLR 25 365 0 2699 222 73 5 chr3 112388631 112389544 -115135034 - L1ME1 LINE L1 0 6166 5170 1400 346 118 30 chr3 112389947 112391130 -115133448 + L3 LINE CR1 291 1576 -1 188 211 0 18 chr3 112392059 112392116 -115132462 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 1164 35 0 0 chr3 112392554 112392698 -115131880 + L1PA4 LINE L1 6011 6154 -1 1266 193 91 37 chr3 112393145 112393441 -115131137 - AluJb SINE Alu 0 312 1 218 204 0 0 chr3 112393540 112393584 -115130994 + L2 LINE L2 3021 3064 -208 214 324 0 0 chr3 112393703 112393771 -115130807 + L2 LINE L2 3203 3270 -2 185 236 222 0 chr3 112395731 112395803 -115128775 - L2 LINE L2 -8 3305 3218 250 309 85 11 chr3 112396030 112396124 -115128454 - MIR3 SINE MIR -104 104 4 488 247 165 37 chr3 112396370 112396613 -115127965 + MLT1J LTR MaLR 237 510 -1 186 288 200 8 chr3 112396683 112396808 -115127770 + L2 LINE L2 2765 2913 -401 330 260 10 21 chr3 112396953 112397049 -115127529 + GA-rich Low_complexity Low_complexity 2 96 0 385 293 157 0 chr3 112399311 112399458 -115125120 - MIR SINE MIR -2 260 91 745 278 99 71 chr3 112399571 112399963 -115124615 - LTR33A LTR ERVL -54 469 67 25 51 0 0 chr3 112401045 112401084 -115123494 + AT_rich Low_complexity Low_complexity 1 39 0 402 74 0 0 chr3 112401535 112401589 -115122989 + (CA)n Simple_repeat Simple_repeat 2 55 0 557 247 93 0 chr3 112401936 112402118 -115122460 + LTR33A LTR ERVL 325 523 0 256 212 35 0 chr3 112402215 112402300 -115122278 + GA-rich Low_complexity Low_complexity 2 89 0 1738 188 11 28 chr3 112403367 112403719 -115120859 - MLT1A1 LTR MaLR -3 362 17 205 328 180 25 chr3 112404929 112405051 -115119527 + MIR SINE MIR 48 188 -74 600 227 15 8 chr3 112406877 112407009 -115117569 + MER5A DNA MER1_type 5 137 -52 22 35 0 0 chr3 112408128 112408157 -115116421 + AT_rich Low_complexity Low_complexity 1 29 0 2369 77 13 0 chr3 112408506 112408806 -115115772 + AluSp SINE Alu 1 304 -9 21 57 0 0 chr3 112409272 112409307 -115115271 + AT_rich Low_complexity Low_complexity 1 35 0 726 288 78 48 chr3 112409377 112409880 -115114698 - LTR33A LTR ERVL -2 521 4 23 0 0 0 chr3 112410001 112410024 -115114554 + AT_rich Low_complexity Low_complexity 1 23 0 322 213 167 19 chr3 112410710 112410818 -115113760 + MIR3 SINE MIR 79 202 -6 1107 174 0 37 chr3 112410865 112411055 -115113523 + AluJb SINE Alu 1 183 -129 225 0 0 0 chr3 112412024 112412049 -115112529 + (T)n Simple_repeat Simple_repeat 1 25 0 640 325 51 43 chr3 112412177 112412432 -115112146 - MIR SINE MIR -4 258 2 357 357 32 0 chr3 112412727 112412853 -115111725 + L2 LINE L2 3143 3272 0 21 0 0 0 chr3 112413335 112413356 -115111222 + AT_rich Low_complexity Low_complexity 1 21 0 2783 103 77 5 chr3 112413839 112414257 -115110321 + MLT2A2 LTR ERVL 6 453 0 334 399 8 0 chr3 112414257 112414390 -115110188 - MIR3 SINE MIR -45 163 30 1161 48 14 0 chr3 112416079 112416225 -115108353 + LTR13 LTR ERVK 1 148 -859 290 234 78 13 chr3 112416568 112416645 -115107933 - MIR SINE MIR -171 91 10 552 192 0 0 chr3 112416670 112416769 -115107809 + FRAM SINE Alu 67 165 -11 308 312 46 52 chr3 112416828 112417001 -115107577 + L1ME LINE L1 5336 5507 -614 1848 166 32 0 chr3 112419042 112419355 -115105223 + MER2 DNA MER2_type 1 323 -22 212 346 12 25 chr3 112420083 112420164 -115104414 + MIR3 SINE MIR 124 203 -5 207 100 0 0 chr3 112421183 112421213 -115103365 + (CACCAT)n Simple_repeat Simple_repeat 3 32 0 552 270 0 0 chr3 112421213 112421339 -115103239 - MIR SINE MIR -14 248 123 188 231 0 0 chr3 112421624 112421663 -115102915 - L3 LINE CR1 -733 844 806 223 315 147 28 chr3 112421814 112421957 -115102621 - L2 LINE L2 0 3313 3154 566 284 56 9 chr3 112422826 112423106 -115101472 + LTR33 LTR ERVL 1 500 -21 23 0 0 0 chr3 112424176 112424199 -115100379 + AT_rich Low_complexity Low_complexity 1 23 0 402 322 158 0 chr3 112425350 112425496 -115099082 - MIR3 SINE MIR -4 204 36 840 292 77 49 chr3 112425548 112425792 -115098786 - L2 LINE L2 -5 3308 3072 1498 219 18 0 chr3 112425792 112426075 -115098503 + AluJo SINE Alu 3 290 -22 840 292 77 49 chr3 112426075 112426420 -115098158 - L2 LINE L2 -241 3072 2623 360 350 8 8 chr3 112426433 112426553 -115098025 + L2 LINE L2 3193 3312 -1 2346 289 121 36 chr3 112426572 112427687 -115096891 - L2 LINE L2 -706 2608 1399 7285 148 41 3 chr3 112427688 112428935 -115095643 - HSMAR2 DNA Mariner -2 1300 7 4898 213 53 5 chr3 112429253 112430252 -115094326 + L1 LINE L1 3105 4177 -1969 2194 133 3 0 chr3 112430252 112430561 -115094017 + AluSx SINE Alu 1 310 -2 4898 213 53 5 chr3 112430561 112430806 -115093772 + L1 LINE L1 4177 4409 -1737 2339 95 0 0 chr3 112430810 112431106 -115093472 + AluSx SINE Alu 1 296 -16 410 111 0 0 chr3 112431244 112431298 -115093280 + AluSp/q SINE Alu 216 269 -44 4985 144 26 20 chr3 112431305 112433056 -115091522 + L1PA16 LINE L1 4398 6166 0 23 33 0 0 chr3 112433107 112433137 -115091441 + AT_rich Low_complexity Low_complexity 1 30 0 1309 38 0 0 chr3 112433543 112433701 -115090877 - L1PA5 LINE L1 -7 6147 5990 208 154 26 0 chr3 112433966 112434005 -115090573 + (CA)n Simple_repeat Simple_repeat 2 41 0 2325 62 0 49 chr3 112434491 112434799 -115089779 - AluY SINE Alu -18 293 1 436 311 106 6 chr3 112434945 112435125 -115089453 + MIR SINE MIR 11 208 -54 1093 162 10 9 chr3 112435125 112435444 -115089134 + MSTD LTR MaLR 2 396 0 665 296 11 17 chr3 112435512 112435691 -115088887 - MIR SINE MIR -70 192 15 275 206 27 0 chr3 112436732 112436805 -115087773 + CT-rich Low_complexity Low_complexity 4 78 0 298 227 27 0 chr3 112438311 112438386 -115086192 + L2 LINE L2 3197 3273 -40 361 302 27 67 chr3 112438499 112438648 -115085930 - MER5A DNA MER1_type -3 186 44 350 301 20 46 chr3 112438520 112438673 -115085905 + MER5A DNA MER1_type 34 182 -7 * 3196 145 13 7 chr3 112439340 112439884 -115084694 - L1PA16 LINE L1 -4 6162 5616 2249 226 82 5 chr3 112439988 112440577 -115084001 - L1 LINE L1 -1388 4758 4125 1352 208 4 0 chr3 112441223 112441492 -115083086 - L1PB4 LINE L1 0 6156 5887 667 276 27 31 chr3 112441784 112442041 -115082537 - MLT1H LTR MaLR -270 279 24 648 249 13 72 chr3 112443560 112443797 -115080781 + MER112 DNA MER1_type 1 223 -37 228 304 10 59 chr3 112444507 112444609 -115079969 + MIR SINE MIR 20 116 -92 295 220 108 27 chr3 112444781 112444967 -115079611 - L1 LINE L1 -2063 4083 3883 3297 216 61 5 chr3 112445166 112445854 -115078724 + L1 LINE L1 3424 4179 -1967 2232 133 3 0 chr3 112445854 112446163 -115078415 + AluSx SINE Alu 1 310 -2 3297 216 61 5 chr3 112446163 112446408 -115078170 + L1 LINE L1 4179 4409 -1737 2352 95 0 0 chr3 112446412 112446708 -115077870 + AluSx SINE Alu 1 296 -16 415 111 0 0 chr3 112446846 112446900 -115077678 + AluSp/q SINE Alu 216 269 -44 4940 129 39 20 chr3 112446907 112448631 -115075947 + L1PA15 LINE L1 4398 6148 -17 588 282 51 18 chr3 112448756 112449225 -115075353 - L1MEd LINE L1 -4733 1577 1046 213 242 167 0 chr3 112451481 112451547 -115073031 - L2 LINE L2 -25 3247 3171 1078 203 154 42 chr3 112451737 112452223 -115072355 - MLT1E2 LTR MaLR -2 624 1 258 105 0 0 chr3 112452492 112452530 -115072048 + (A)n Simple_repeat Simple_repeat 1 38 0 257 319 86 17 chr3 112452791 112452907 -115071671 + L2 LINE L2 3149 3272 0 213 256 172 8 chr3 112453076 112453204 -115071374 - MIR SINE MIR -62 146 17 664 162 0 84 chr3 112454492 112454634 -115069944 - FLAM_C SINE Alu -9 134 5 3533 166 3 12 chr3 112455197 112455860 -115068718 + L1 LINE L1 3710 4366 -1780 3169 78 4 15 chr3 112455850 112456324 -115068254 + L1MA1 LINE L1 5515 5983 -319 * 24 0 0 0 chr3 112457215 112457239 -115067339 + AT_rich Low_complexity Low_complexity 1 24 0 208 154 26 0 chr3 112457657 112457696 -115066882 + (CA)n Simple_repeat Simple_repeat 2 41 0 1703 88 19 65 chr3 112458182 112458489 -115066089 - AluY SINE Alu -18 293 1 1155 188 41 8 chr3 112458827 112459093 -115065485 + L1PA16 LINE L1 5892 6166 0 23 33 0 0 chr3 112459144 112459174 -115065404 + AT_rich Low_complexity Low_complexity 1 30 0 343 217 13 20 chr3 112459584 112459736 -115064842 - L1PA5 LINE L1 -11 6143 5993 2026 135 23 6 chr3 112460163 112460512 -115064066 - L1PA16 LINE L1 -255 5911 5557 2894 162 17 17 chr3 112460512 112461101 -115063477 + L1PA16 LINE L1 5574 6165 -1 363 301 67 109 chr3 112462256 112462658 -115061920 - L1M2 LINE L1 -5707 1142 758 1529 201 24 10 chr3 112464365 112464663 -115059915 - AluSx SINE Alu -10 302 1 468 279 58 37 chr3 112467052 112467242 -115057336 + MIR3 SINE MIR 21 177 -31 241 340 21 0 chr3 112467613 112467707 -115056871 + MIR3 SINE MIR 110 205 -3 240 288 281 7 chr3 112467817 112467963 -115056615 - MER5A DNA MER1_type -3 186 1 274 331 113 0 chr3 112468102 112468226 -115056352 - L2 LINE L2 -211 3061 2924 252 268 132 42 chr3 112468547 112468737 -115055841 - L2 LINE L2 -822 2492 2286 301 363 48 24 chr3 112470937 112471104 -115053474 + MIR SINE MIR 18 191 -66 824 195 68 44 chr3 112472239 112472444 -115052134 + MER20 DNA MER1_type 3 212 -7 2433 83 7 0 chr3 112472503 112472804 -115051774 - AluSg SINE Alu -7 303 1 386 291 171 19 chr3 112472988 112473146 -115051432 - MIR3 SINE MIR -7 201 20 6207 69 3 7 chr3 112473915 112474775 -115049803 + L1PB1 LINE L1 5295 6151 0 1931 152 20 32 chr3 112475809 112476010 -115048568 - MER47B DNA MER2_type -1905 418 221 2115 128 21 18 chr3 112476010 112476346 -115048232 + MER1B DNA MER1_type 1 337 0 1931 152 20 32 chr3 112476346 112476486 -115048092 - MER47B DNA MER2_type -2102 221 81 337 273 17 28 chr3 112476490 112476600 -115047978 - MER5A DNA MER1_type -21 159 49 200 268 63 102 chr3 112476509 112476636 -115047942 + MER5A DNA MER1_type 52 173 -16 * 1135 144 229 30 chr3 112476989 112477314 -115047264 + THE1C LTR MaLR 3 373 -2 215 231 92 15 chr3 112479888 112479953 -115044625 - L2 LINE L2 -1 3271 3202 734 251 76 5 chr3 112483697 112483908 -115040670 + MIR SINE MIR 34 259 -3 2219 89 4 0 chr3 112484721 112485029 -115039549 - AluSc SINE Alu 0 309 1 716 169 247 17 chr3 112486832 112487010 -115037568 - MER20 DNA MER1_type 0 219 1 470 262 172 0 chr3 112487183 112487328 -115037250 - MER5A DNA MER1_type 0 189 20 374 301 58 39 chr3 112487683 112487839 -115036739 - MIR SINE MIR -1 261 103 460 220 23 8 chr3 112488019 112488151 -115036427 - Charlie2a DNA MER1_type 0 2862 2729 323 196 168 0 chr3 112488151 112488258 -115036320 - Charlie2a DNA MER1_type -1266 1596 1472 387 0 0 0 chr3 112488392 112488435 -115036143 + (CTCTG)n Simple_repeat Simple_repeat 1 43 0 501 174 58 25 chr3 112488588 112488709 -115035869 - Charlie2a DNA MER1_type -2737 125 1 356 304 6 50 chr3 112489245 112489406 -115035172 + L2 LINE L2 3159 3312 -1 1753 127 91 45 chr3 112490333 112490478 -115034100 - Charlie1b DNA MER1_type -2238 523 386 2221 110 0 10 chr3 112490478 112490779 -115033799 + AluY SINE Alu 2 299 -12 1753 127 91 45 chr3 112490779 112491060 -115033518 - Charlie1b DNA MER1_type -2375 386 77 182 150 75 0 chr3 112491512 112491552 -115033026 - L2 LINE L2 -13 3300 3258 770 219 24 52 chr3 112494072 112494313 -115030265 + MIR SINE MIR 3 230 -32 834 148 31 0 chr3 112494349 112494511 -115030067 + L1MA8 LINE L1 6121 6287 -4 978 164 35 66 chr3 112494763 112494989 -115029589 - MER20 DNA MER1_type 0 219 1 2105 131 14 35 chr3 112495342 112495686 -115028892 - MER1B DNA MER1_type 0 337 1 320 236 55 50 chr3 112496067 112496249 -115028329 - L1MC4a LINE L1 -1787 6021 5839 454 242 115 67 chr3 112496657 112496822 -115027756 - MIR SINE MIR -70 192 20 295 231 100 69 chr3 112496938 112497098 -115027480 + L2 LINE L2 2813 2977 -337 368 185 24 232 chr3 112497106 112497317 -115027261 + L2 LINE L2 3133 3299 -14 432 264 101 19 chr3 112497459 112497618 -115026960 - MIR SINE MIR -75 187 16 26 0 0 0 chr3 112498037 112498063 -115026515 + AT_rich Low_complexity Low_complexity 1 26 0 399 224 109 63 chr3 112503682 112503856 -115020722 - L2 LINE L2 -29 3284 3103 457 222 118 21 chr3 112504391 112504552 -115020026 + MIR3 SINE MIR 33 204 -4 486 0 0 0 chr3 112504559 112504613 -115019965 + (TG)n Simple_repeat Simple_repeat 1 54 0 22 0 0 0 chr3 112506431 112506453 -115018125 + AT_rich Low_complexity Low_complexity 1 22 0 35 0 0 0 chr3 112508372 112508407 -115016171 + GC_rich Low_complexity Low_complexity 1 35 0 207 246 0 0 chr3 112508535 112508592 -115015986 + (CGG)n Simple_repeat Simple_repeat 3 59 0 21 36 0 0 chr3 112508676 112508704 -115015874 + GC_rich Low_complexity Low_complexity 1 28 0 462 323 72 5 chr3 112510526 112510721 -115013857 - MIR SINE MIR -2 260 53 234 196 39 0 chr3 112510932 112510983 -115013595 + MER91B DNA MER1_type 78 130 -60 60 15 0 0 chr3 112512933 112513000 -115011578 + AT_rich Low_complexity Low_complexity 1 67 0 201 74 0 0 chr3 112513161 112513188 -115011390 + (TATATG)n Simple_repeat Simple_repeat 2 28 0 181 297 47 0 chr3 112513684 112513748 -115010830 - L3 LINE CR1 -5 1572 1506 2251 115 0 0 chr3 112513824 112514119 -115010459 - AluSx SINE Alu -17 295 1 501 187 27 120 chr3 112514800 112514950 -115009628 - MIR3 SINE MIR -3 205 70 288 284 134 16 chr3 112515530 112515657 -115008921 - L3 LINE CR1 -214 1363 1222 257 301 56 92 chr3 112516633 112516759 -115007819 + MIR3 SINE MIR 19 138 -70 2183 100 0 0 chr3 112516759 112517077 -115007501 + AluSg SINE Alu 1 318 0 257 301 56 92 chr3 112517077 112517145 -115007433 + MIR3 SINE MIR 138 207 -1 323 292 48 42 chr3 112517420 112517588 -115006990 - MIR3 SINE MIR -1 207 39 461 301 108 14 chr3 112518300 112518513 -115006065 + MIR SINE MIR 22 254 -8 1756 223 137 9 chr3 112518516 112518549 -115006029 - MLT2B1 LTR ERVL 0 520 493 432 0 0 0 chr3 112518549 112518597 -115005981 + (TG)n Simple_repeat Simple_repeat 2 49 0 1756 223 137 9 chr3 112518597 112519024 -115005554 - MLT2B1 LTR ERVL -27 493 1 516 314 68 22 chr3 112520073 112520443 -115004135 - L1ME4a LINE L1 -224 5897 5511 1960 144 42 21 chr3 112521617 112521786 -115002792 + L1M4 LINE L1 5434 5598 -586 1612 176 62 26 chr3 112521786 112522138 -115002440 - MLT1A1 LTR MaLR 0 365 1 1960 144 42 21 chr3 112522138 112522349 -115002229 + L1M4 LINE L1 5598 5822 -362 2034 151 0 3 chr3 112522357 112522662 -115001916 + AluJb SINE Alu 1 304 -8 1074 152 74 14 chr3 112522669 112522886 -115001692 - L1MB5 LINE L1 -143 6031 5802 402 151 0 0 chr3 112523764 112523837 -115000741 + (CA)n Simple_repeat Simple_repeat 1 73 0 23 0 0 0 chr3 112525611 112525634 -114998944 + AT_rich Low_complexity Low_complexity 1 23 0 2457 81 3 0 chr3 112525682 112525989 -114998589 + AluSp SINE Alu 1 308 -5 382 303 0 42 chr3 112527889 112528008 -114996570 - L2 LINE L2 -23 3249 3136 2239 109 3 10 chr3 112528528 112528841 -114995737 + AluSp SINE Alu 1 311 -2 380 330 36 9 chr3 112529159 112529271 -114995307 - L2 LINE L2 -35 3237 3123 182 352 104 55 chr3 112529589 112530556 -114994022 - L2 LINE L2 -560 2754 1740 25 0 0 0 chr3 112533962 112533987 -114990591 + AT_rich Low_complexity Low_complexity 1 25 0 653 251 201 17 chr3 112536127 112536426 -114988152 + MLT1H LTR MaLR 1 354 -195 1092 235 43 8 chr3 112537261 112537495 -114987083 + MIR SINE MIR 1 242 -20 2711 262 61 25 chr3 112537612 112537935 -114986643 - L1MEd LINE L1 -2188 3941 3631 1782 176 13 0 chr3 112537935 112538241 -114986337 + AluJb SINE Alu 1 310 -2 2711 262 61 25 chr3 112538241 112539366 -114985212 - L1MEd LINE L1 -2498 3631 2440 336 292 84 32 chr3 112539366 112539520 -114985058 - L1MEd LINE L1 -4192 2118 1957 196 184 0 0 chr3 112539659 112539697 -114984881 + CT-rich Low_complexity Low_complexity 3 180 0 1806 150 0 0 chr3 112539697 112539964 -114984614 - AluSx SINE Alu 0 349 45 5027 126 39 20 chr3 112540079 112541927 -114982651 + L1PA15 LINE L1 4298 6148 -17 742 285 35 12 chr3 112542052 112542529 -114982049 - L1MEd LINE L1 -4733 1577 1046 209 242 167 0 chr3 112544785 112544851 -114979727 - L2 LINE L2 -25 3247 3171 1161 215 99 58 chr3 112545041 112545527 -114979051 - MLT1E2 LTR MaLR -2 624 1 256 265 51 112 chr3 112545532 112545747 -114978831 - MLT1K LTR MaLR -18 570 369 258 105 0 0 chr3 112545796 112545834 -114978744 + (A)n Simple_repeat Simple_repeat 1 38 0 257 319 86 17 chr3 112546096 112546212 -114978366 + L2 LINE L2 3149 3272 0 211 256 172 8 chr3 112546381 112546509 -114978069 - MIR SINE MIR -62 146 17 647 162 0 84 chr3 112547794 112547936 -114976642 - FLAM_C SINE Alu -9 134 5 3729 167 3 12 chr3 112548497 112549162 -114975416 + L1 LINE L1 3708 4366 -1780 5456 95 4 8 chr3 112549162 112549943 -114974635 + L1MA1 LINE L1 5515 6302 0 431 280 37 53 chr3 112551135 112551322 -114973256 + MIR SINE MIR 30 212 -50 375 23 0 0 chr3 112553994 112554038 -114970540 + (TA)n Simple_repeat Simple_repeat 1 44 0 180 0 0 0 chr3 112554037 112554057 -114970521 + (CA)n Simple_repeat Simple_repeat 2 21 0 * 184 250 33 87 chr3 112554286 112554378 -114970200 - L3 LINE CR1 -1151 426 340 21 0 0 0 chr3 112554409 112554430 -114970148 + AT_rich Low_complexity Low_complexity 1 21 0 2197 106 3 0 chr3 112554660 112554952 -114969626 + AluSx SINE Alu 3 295 -17 200 135 27 0 chr3 112555183 112555220 -114969358 + (TA)n Simple_repeat Simple_repeat 2 39 0 36656 87 8 6 chr3 112555522 112561505 -114963073 + L1PA6 LINE L1 182 6167 0 251 254 59 8 chr3 112561686 112561814 -114962764 - L1MC/D LINE L1 -441 5801 5686 1815 137 0 0 chr3 112562630 112562892 -114961686 - AluSx SINE Alu -13 299 38 23 68 0 0 chr3 112563179 112563223 -114961355 + AT_rich Low_complexity Low_complexity 1 44 0 400 251 58 73 chr3 112563305 112563632 -114960946 - L1ME4a LINE L1 -255 5866 5545 1619 318 29 22 chr3 112563852 112564481 -114960097 - HERV16 LTR ERVL -4347 649 17 456 333 57 28 chr3 112564492 112564899 -114959679 - LTR16A1 LTR ERVL 0 450 1 22 0 0 0 chr3 112565099 112565121 -114959457 + AT_rich Low_complexity Low_complexity 1 22 0 187 272 10 97 chr3 112565286 112565389 -114959189 - L2 LINE L2 -4 3268 3175 468 315 63 5 chr3 112565870 112566076 -114958502 + MIR SINE MIR 34 258 -4 21 0 0 0 chr3 112566076 112566097 -114958481 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chr3 112567725 112567766 -114956812 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 1977 129 4 4 chr3 112567769 112568049 -114956529 - AluSx SINE Alu -30 282 3 270 358 75 15 chr3 112569085 112569219 -114955359 - MIR3 SINE MIR -22 186 45 4180 124 16 13 chr3 112569612 112570291 -114954287 - L1PA15 LINE L1 -1 6164 5484 * 14263 36 2 1 chr3 112570285 112572781 -114951797 - L1PA4 LINE L1 -2 6153 3652 350 62 0 0 chr3 112572786 112572834 -114951744 - L1PA15 LINE L1 -668 5497 5450 482 265 61 14 chr3 112572834 112572981 -114951597 + FRAM SINE Alu 2 155 -11 262 318 0 63 chr3 112573517 112573643 -114950935 + MIR3 SINE MIR 91 208 0 183 42 0 0 chr3 112574086 112574110 -114950468 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 208 328 125 23 chr3 112574111 112574239 -114950339 - L2 LINE L2 -12 3301 3161 346 301 52 64 chr3 112574808 112574981 -114949597 + HAL1 LINE L1 22 192 -2315 1447 250 32 56 chr3 112575012 112575476 -114949102 - LTR16A1 LTR ERVL -1 456 4 2709 135 16 2 chr3 112576202 112576639 -114947939 - L1PA15 LINE L1 -2 6163 5721 600 66 0 0 chr3 112576639 112576715 -114947863 - AluY SINE Alu -19 292 217 7360 175 19 0 chr3 112576715 112578465 -114946113 - L1PA15 LINE L1 -428 5737 3957 477 259 30 0 chr3 112578627 112578758 -114945820 - LTR16A1 LTR ERVL -322 135 1 1043 269 122 18 chr3 112578946 112579489 -114945089 + HAL1 LINE L1 1034 1632 -875 501 285 125 51 chr3 112579501 112579974 -114944604 + HAL1 LINE L1 1675 2182 -325 1236 65 12 6 chr3 112580055 112580223 -114944355 + L1PB2 LINE L1 5981 6149 -2 22 0 0 0 chr3 112580223 112580245 -114944333 + AT_rich Low_complexity Low_complexity 1 22 0 321 203 14 0 chr3 112580307 112580376 -114944202 + HAL1 LINE L1 2326 2395 -112 25 0 0 0 chr3 112580467 112580492 -114944086 + AT_rich Low_complexity Low_complexity 1 25 0 1746 170 0 39 chr3 112580892 112581198 -114943380 + AluJb SINE Alu 1 294 -18 275 128 64 21 chr3 112581253 112581347 -114943231 + (TA)n Simple_repeat Simple_repeat 2 99 0 2918 198 34 67 chr3 112581347 112582174 -114942404 + L1ME1 LINE L1 5323 6122 -44 346 279 155 0 chr3 112582078 112582207 -114942371 + L1MA10 LINE L1 6167 6315 -19 * 4595 83 3 5 chr3 112582246 112582875 -114941703 - L1PA13 LINE L1 0 6163 5536 249 331 73 37 chr3 112582956 112583092 -114941486 - L2 LINE L2 0 3272 3132 21 0 0 0 chr3 112583166 112583187 -114941391 + AT_rich Low_complexity Low_complexity 1 21 0 383 351 8 37 chr3 112583529 112583663 -114940915 - L3 LINE CR1 -7 1570 1441 932 223 5 0 chr3 112583990 112584174 -114940404 + MLT1B LTR MaLR 206 390 0 649 153 36 9 chr3 112584465 112584576 -114940002 + FLAM_A SINE Alu 12 125 -17 259 259 80 54 chr3 112585437 112585549 -114939029 - MIR SINE MIR -74 134 20 1421 193 61 30 chr3 112585649 112585944 -114938634 + AluJo SINE Alu 1 304 -8 4111 77 4 0 chr3 112585944 112586489 -114938089 + L1PA13 LINE L1 5612 6158 -5 2995 159 94 48 chr3 112586535 112587206 -114937372 + L1MB8 LINE L1 5332 6033 -145 346 185 74 0 chr3 112587216 112587297 -114937281 + L1MB7 LINE L1 6082 6168 -16 480 300 75 0 chr3 112587505 112587665 -114936913 - MIR SINE MIR -78 184 13 493 264 87 34 chr3 112588278 112588486 -114936092 + MLT1I LTR MaLR 43 261 -148 216 398 19 0 chr3 112588583 112588691 -114935887 - L2 LINE L2 -414 2900 2791 1571 243 61 35 chr3 112588963 112589453 -114935125 - MLT1D LTR MaLR 0 505 3 11566 157 39 38 chr3 112590221 112592502 -114932076 + L1M1 LINE L1 17 2299 -5266 290 306 35 12 chr3 112593872 112593957 -114930621 - L2 LINE L2 0 3272 3186 2046 89 7 4 chr3 112595059 112595328 -114929250 - AluSc SINE Alu 0 309 40 232 318 31 0 chr3 112595431 112595560 -114929018 - MER103 DNA DNA -9 157 25 1606 181 0 21 chr3 112596312 112596630 -114927948 + AluJb SINE Alu 1 312 0 180 0 0 0 chr3 112597935 112597955 -114926623 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 2278 149 54 95 chr3 112599574 112600111 -114924467 + MLT2B3 LTR ERVL 1 514 -40 452 18 18 0 chr3 112600111 112600168 -114924410 + (TG)n Simple_repeat Simple_repeat 2 59 0 2278 149 54 95 chr3 112600168 112600208 -114924370 + MLT2B3 LTR ERVL 514 554 0 515 249 16 114 chr3 112600310 112600503 -114924075 - MIR3 SINE MIR -25 183 10 208 222 57 126 chr3 112601516 112601746 -114922832 + L2 LINE L2 2833 3046 -226 24 0 0 0 chr3 112603027 112603051 -114921527 + AT_rich Low_complexity Low_complexity 1 24 0 867 195 5 56 chr3 112603348 112603563 -114921015 + MER20 DNA MER1_type 16 219 0 25 0 0 0 chr3 112603758 112603783 -114920795 + AT_rich Low_complexity Low_complexity 1 25 0 232 231 138 0 chr3 112603783 112603848 -114920730 + MIR SINE MIR 131 204 -58 268 333 0 30 chr3 112604746 112604930 -114919648 + CT-rich Low_complexity Low_complexity 1 178 0 1669 164 10 39 chr3 112607726 112608031 -114916547 + AluJo SINE Alu 1 296 -16 185 318 0 45 chr3 112608085 112608151 -114916427 + L2 LINE L2 3210 3272 0 2316 73 7 10 chr3 112608578 112608879 -114915699 + AluSp SINE Alu 1 300 -13 2003 153 3 0 chr3 112608991 112609292 -114915286 + AluSx SINE Alu 2 303 -9 246 264 154 9 chr3 112609480 112609590 -114914988 - L3 LINE CR1 -593 984 859 559 275 217 0 chr3 112609669 112609858 -114914720 - MIR SINE MIR 0 262 33 276 317 117 17 chr3 112609997 112610117 -114914461 - MIR3 SINE MIR -23 185 54 181 234 0 21 chr3 112610442 112610489 -114914089 - L2 LINE L2 -18 3295 3250 183 129 0 0 chr3 112611699 112611730 -114912848 + (CA)n Simple_repeat Simple_repeat 2 32 0 208 325 0 36 chr3 112612117 112612200 -114912378 - L2 LINE L2 -8 3305 3226 1369 113 59 18 chr3 112612250 112612471 -114912107 + MER30 DNA MER1_type 1 230 0 2138 103 3 51 chr3 112612608 112612920 -114911658 + AluSx SINE Alu 1 297 -15 2256 89 17 0 chr3 112612925 112613216 -114911362 + AluSp SINE Alu 1 296 -17 1762 154 7 38 chr3 112613686 112613979 -114910599 - AluJb SINE Alu -28 284 1 901 183 39 13 chr3 112614161 112614314 -114910264 + AluJb SINE Alu 137 293 -19 207 0 0 0 chr3 112614427 112614450 -114910128 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 448 325 92 22 chr3 112614891 112615522 -114909056 - L1MEd LINE L1 -3336 2793 2119 22 35 0 0 chr3 112615793 112615822 -114908756 + AT_rich Low_complexity Low_complexity 1 29 0 769 293 83 59 chr3 112615883 112617088 -114907490 - L1MEd LINE L1 -4579 1731 445 346 306 57 96 chr3 112617144 112617510 -114907068 - L1MEd LINE L1 -5726 393 42 27 29 0 0 chr3 112617896 112617930 -114906648 + AT_rich Low_complexity Low_complexity 1 34 0 230 223 137 58 chr3 112618459 112618598 -114905980 - MLT1K LTR MaLR -158 430 281 2552 60 0 0 chr3 112619098 112619400 -114905178 - AluY SINE Alu -9 302 1 2119 111 0 36 chr3 112623012 112623318 -114901260 + AluSx SINE Alu 1 295 -17 2231 120 3 0 chr3 112624420 112624721 -114899857 + AluSx SINE Alu 1 302 -10 594 216 52 0 chr3 112625725 112625859 -114898719 + MIR SINE MIR 98 238 -24 309 224 0 0 chr3 112626021 112626079 -114898499 + L2 LINE L2 3215 3272 0 27 0 0 0 chr3 112626079 112626106 -114898472 + AT_rich Low_complexity Low_complexity 1 27 0 493 243 64 97 chr3 112626242 112626509 -114898069 - MIR SINE MIR 0 262 5 520 226 85 18 chr3 112626653 112626817 -114897761 - MER5B DNA MER1_type -3 175 1 203 204 0 37 chr3 112628234 112628288 -114896290 + L2 LINE L2 3262 3313 0 719 254 56 14 chr3 112628934 112629147 -114895431 + MIR SINE MIR 15 236 -26 234 228 35 0 chr3 112629150 112629194 -114895384 + (TATG)n Simple_repeat Simple_repeat 4 52 -10 2535 48 0 0 chr3 112629194 112629485 -114895093 - AluSg SINE Alu -19 291 1 234 228 35 0 chr3 112629485 112629497 -114895081 + (TATG)n Simple_repeat Simple_repeat 52 62 0 242 232 0 0 chr3 112630521 112630577 -114894001 + T-rich Low_complexity Low_complexity 1 56 0 274 350 158 19 chr3 112630739 112631322 -114893256 + L2 LINE L2 1710 2373 -941 633 274 12 32 chr3 112631478 112631726 -114892852 - L1ME3 LINE L1 -7 6155 5913 622 221 74 78 chr3 112631760 112631846 -114892732 - L1ME3 LINE L1 -607 5555 5470 1736 161 0 20 chr3 112631846 112632138 -114892440 + AluJb SINE Alu 1 286 -26 622 221 74 78 chr3 112632138 112632549 -114892029 - L1ME3 LINE L1 -692 5470 5060 208 200 0 25 chr3 112632550 112632590 -114891988 - MIR SINE MIR -136 126 88 31 58 0 0 chr3 112632906 112632958 -114891620 + AT_rich Low_complexity Low_complexity 1 52 0 2470 80 0 0 chr3 112633181 112633481 -114891097 - AluY SINE Alu -10 301 2 272 176 20 0 chr3 112633844 112633895 -114890683 + L2 LINE L2 3221 3272 0 382 291 0 36 chr3 112634357 112634466 -114890112 - MER5A DNA MER1_type -67 122 18 653 235 94 37 chr3 112634466 112634712 -114889866 + MIR SINE MIR 1 261 -1 41 48 0 0 chr3 112637243 112637305 -114887273 + AT_rich Low_complexity Low_complexity 1 62 0 3312 188 19 14 chr3 112838052 112838776 -114685802 - L1 LINE L1 -2013 4133 3406 1658 236 10 2 chr3 112838788 112839195 -114685383 + L1 LINE L1 2484 2893 -3253 2362 94 47 3 chr3 112839195 112839535 -114685043 - THE1A LTR MaLR 0 355 1 473 27 27 0 chr3 112839535 112839609 -114684969 - THE1A-int LTR MaLR 0 1580 1505 449 349 114 15 chr3 112840123 112840395 -114684183 - L2 LINE L2 -338 2976 2678 758 264 102 0 chr3 112840436 112840652 -114683926 - MIR SINE MIR -6 256 19 234 253 0 84 chr3 112840695 112840778 -114683800 - L2 LINE L2 -665 2649 2574 33 56 0 0 chr3 112840871 112840925 -114683653 + AT_rich Low_complexity Low_complexity 1 54 0 247 235 0 0 chr3 112841225 112841276 -114683302 + (CA)n Simple_repeat Simple_repeat 2 52 0 271 174 13 91 chr3 112841358 112841435 -114683143 + FRAM/FAM SINE Alu 1 59 -107 2137 108 27 0 chr3 112842341 112842638 -114681940 + AluSp SINE Alu 1 305 -8 24 32 0 0 chr3 112842829 112842860 -114681718 + AT_rich Low_complexity Low_complexity 1 31 0 218 214 0 0 chr3 112843022 112843064 -114681514 - L2 LINE L2 -6 3307 3266 3113 178 19 3 chr3 112843284 112843920 -114680658 + L1 LINE L1 4494 5139 -1007 252 143 0 0 chr3 112843920 112843962 -114680616 + (A)n Simple_repeat Simple_repeat 1 42 0 315 259 146 13 chr3 112844283 112844441 -114680137 + MIR SINE MIR 80 258 -4 1177 229 70 3 chr3 112845167 112845482 -114679096 + MER58B DNA MER1_type 1 336 -5 29 94 0 0 chr3 112847903 112847988 -114676590 + AT_rich Low_complexity Low_complexity 1 85 0 904 150 14 0 chr3 112848096 112848236 -114676342 - FRAM SINE Alu -43 133 1 1831 180 58 5 chr3 112848240 112848956 -114675622 - L1M2 LINE L1 -640 5672 4920 318 294 62 17 chr3 112848986 112849093 -114675485 + LTR16A LTR ERVL 239 359 -91 2165 116 3 7 chr3 112849093 112849395 -114675183 - AluSc SINE Alu -8 301 1 318 294 62 17 chr3 112849395 112849464 -114675114 + LTR16A LTR ERVL 359 423 -27 676 216 126 0 chr3 112849487 112849654 -114674924 - MLT2B1 LTR ERVL -85 435 248 770 179 0 0 chr3 112849659 112849799 -114674779 - FLAM_C SINE Alu -3 140 1 27 29 0 0 chr3 112850627 112850661 -114673917 + AT_rich Low_complexity Low_complexity 1 34 0 2275 125 11 13 chr3 112850666 112851041 -114673537 - L1PB4 LINE L1 -1 6155 5782 240 35 0 0 chr3 112851049 112851078 -114673500 + (TG)n Simple_repeat Simple_repeat 2 30 0 265 219 0 62 chr3 112851100 112851196 -114673382 - L1MC4 LINE L1 -1339 6703 6614 231 167 0 0 chr3 112851199 112851241 -114673337 + (TA)n Simple_repeat Simple_repeat 1 42 0 3765 157 25 4 chr3 112851247 112852538 -114672040 - L1P5 LINE L1 -365 5791 4475 253 194 16 0 chr3 112852539 112852601 -114671977 - L1M2 LINE L1 -1840 4306 4244 5305 161 43 41 chr3 112852702 112853727 -114670851 + L1MA9 LINE L1 4805 5800 -512 191 36 36 0 chr3 112853727 112853755 -114670823 + (TA)n Simple_repeat Simple_repeat 2 30 0 5305 161 43 41 chr3 112853755 112854269 -114670309 + L1MA9 LINE L1 5800 6312 0 2190 109 0 0 chr3 112854400 112854732 -114669846 + AluSx SINE Alu 1 332 0 783 189 0 63 chr3 112854770 112854929 -114669649 + AluJo SINE Alu 1 149 -163 1092 180 26 44 chr3 112854930 112854968 -114669610 + AluJb SINE Alu 82 119 -193 180 97 0 0 chr3 112854968 112854999 -114669579 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1092 180 26 44 chr3 112854999 112855188 -114669390 + AluJb SINE Alu 119 305 -7 22 35 0 0 chr3 112856037 112856066 -114668512 + AT_rich Low_complexity Low_complexity 1 29 0 203 265 0 0 chr3 112856099 112856148 -114668430 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 1971 109 0 48 chr3 112857020 112857332 -114667246 + AluSg SINE Alu 1 297 -13 225 271 221 16 chr3 112857432 112857554 -114667024 - MER5B DNA MER1_type -31 147 1 189 0 0 0 chr3 112857662 112857683 -114666895 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 209 171 0 0 chr3 112858080 112858115 -114666463 + (CCCA)n Simple_repeat Simple_repeat 2 36 0 199 370 62 0 chr3 112858344 112858425 -114666153 + L2 LINE L2 3185 3270 -2 1993 71 0 26 chr3 112858649 112858917 -114665661 + AluY SINE Alu 1 261 -50 309 26 0 0 chr3 112859304 112859343 -114665235 - MADE1 DNA Mariner 0 80 42 316 125 21 0 chr3 112859978 112860026 -114664552 - MER5B DNA MER1_type -129 49 1 1205 217 103 15 chr3 112860152 112860617 -114663961 - L1M4 LINE L1 -2751 3395 2890 2599 82 8 3 chr3 112860618 112860971 -114663607 + THE1A LTR MaLR 1 355 0 9836 87 8 1 chr3 112860971 112862345 -114662233 + THE1A-int LTR MaLR 1 1384 -196 2378 98 3 3 chr3 112862651 112862956 -114661622 - AluSc SINE Alu -4 305 1 324 0 0 0 chr3 112863807 112863843 -114660735 + (TG)n Simple_repeat Simple_repeat 1 36 0 306 0 0 0 chr3 112863842 112863876 -114660702 + (GA)n Simple_repeat Simple_repeat 1 34 0 * 25 0 0 0 chr3 112863979 112864004 -114660574 + AT_rich Low_complexity Low_complexity 1 25 0 549 296 34 15 chr3 112868256 112868462 -114656116 - Charlie8 DNA MER1_type -2127 290 81 1632 253 155 13 chr3 112868465 112869244 -114655334 + L2 LINE L2 2425 3313 0 398 250 0 28 chr3 112873001 112873109 -114651469 - MER5A DNA MER1_type -80 109 5 295 324 6 14 chr3 112874863 112875054 -114649524 + MIR SINE MIR 20 256 -6 195 262 0 0 chr3 112875118 112875160 -114649418 + L2 LINE L2 3220 3261 -11 289 299 174 7 chr3 112875679 112875823 -114648755 + MIR3 SINE MIR 32 199 -9 1003 244 5 0 chr3 112877048 112877257 -114647321 - MER58A DNA MER1_type -1 223 14 860 201 0 24 chr3 112877742 112877906 -114646672 - AluJo SINE Alu -15 297 138 212 302 103 60 chr3 112878095 112878327 -114646251 - L2 LINE L2 -115 3198 2957 1799 76 9 1 chr3 112878455 112878727 -114645851 + L1PA8A LINE L1 5864 6154 0 961 122 23 0 chr3 112878792 112878923 -114645655 + AluSq SINE Alu 1 134 -178 339 25 0 0 chr3 112878923 112878963 -114645615 + (TG)n Simple_repeat Simple_repeat 2 41 0 303 196 0 0 chr3 112878965 112879021 -114645557 + L1MC4 LINE L1 6648 6703 -1339 1405 81 0 0 chr3 112879033 112879206 -114645372 + AluSq SINE Alu 127 299 -14 407 291 17 23 chr3 112879220 112879395 -114645183 + MER58A DNA MER1_type 49 222 -2 332 196 43 22 chr3 112879399 112879491 -114645087 + L1ME1 LINE L1 6068 6161 -5 297 305 0 21 chr3 112879540 112879635 -114644943 - MIR SINE MIR -162 100 8 745 222 0 13 chr3 112879696 112879900 -114644678 - L1ME1 LINE L1 -172 5994 5839 750 203 0 0 chr3 112879911 112880044 -114644534 - AluJo SINE Alu -169 133 1 495 168 10 10 chr3 112880098 112880199 -114644379 - MER69 DNA AcHobo -3 2523 2423 2090 236 53 30 chr3 112880262 112880956 -114643622 - MER69 DNA AcHobo -464 762 53 2036 139 39 3 chr3 112881629 112881961 -114642617 - MER2 DNA MER2_type 0 344 1 4630 80 7 3 chr3 112882401 112883544 -114641034 - L1PA8A LINE L1 -239 5892 4748 2404 70 3 13 chr3 112883628 112883928 -114640650 + AluY SINE Alu 1 297 -14 297 277 19 13 chr3 112883959 112884146 -114640432 - L1M4 LINE L1 -3572 2574 2386 902 145 0 21 chr3 112885852 112885997 -114638581 + FRAM SINE Alu 5 146 -30 561 30 0 0 chr3 112886001 112886068 -114638510 + (CA)n Simple_repeat Simple_repeat 2 68 0 753 274 120 4 chr3 112886367 112886601 -114637977 - MIR SINE MIR 0 262 2 250 228 0 0 chr3 112886846 112886903 -114637675 - MER94 DNA DNA 0 134 78 196 328 125 0 chr3 112887108 112887172 -114637406 + MIR3 SINE MIR 85 156 -52 188 281 140 0 chr3 112888152 112888209 -114636369 - MIR SINE MIR -170 92 28 1760 156 77 11 chr3 112888248 112888614 -114635964 - L1MB2 LINE L1 0 6171 5782 209 213 38 12 chr3 112888651 112888731 -114635847 + (TA)n Simple_repeat Simple_repeat 1 82 0 1221 214 51 19 chr3 112888748 112889081 -114635497 - L1P5 LINE L1 -380 5776 5427 1625 173 43 4 chr3 112889142 112889419 -114635159 - AluJb SINE Alu -24 288 1 1443 156 30 60 chr3 112889575 112889909 -114634669 + L1MB7 LINE L1 5714 6037 -147 2310 81 7 0 chr3 112892230 112892526 -114632052 - AluY SINE Alu -13 298 1 343 167 0 0 chr3 112892748 112892808 -114631770 + MER94 DNA DNA 2 61 -73 1756 126 8 15 chr3 112892900 112893161 -114631417 + AluSx SINE Alu 39 297 -15 702 141 55 8 chr3 112893253 112893381 -114631197 + L1 LINE L1 2 135 -6714 4114 130 30 28 chr3 112893381 112894106 -114630472 - MER50 LTR ERV1 -7 727 1 4662 207 164 5 chr3 112894110 112894553 -114630025 + L1 LINE L1 145 516 -6333 2245 121 10 0 chr3 112894553 112894859 -114629719 + AluSg SINE Alu 1 309 -1 4662 207 164 5 chr3 112894859 112895588 -114628990 + L1 LINE L1 516 1503 -5346 2715 171 68 56 chr3 112895589 112896268 -114628310 - LTR8A LTR ERV1 0 727 41 1435 141 0 0 chr3 112896291 112896539 -114628039 + L1 LINE L1 1505 1752 -5097 557 206 34 7 chr3 112896537 112896683 -114627895 - L1 LINE L1 -3261 2885 2736 * 2226 170 13 80 chr3 112896682 112897294 -114627284 + L1 LINE L1 3913 4483 -2365 457 74 62 0 chr3 112897307 112897388 -114627190 + L1MA4A LINE L1 6217 6302 -1 26 0 0 0 chr3 112897447 112897473 -114627105 + AT_rich Low_complexity Low_complexity 1 26 0 1376 157 0 67 chr3 112897644 112897804 -114626774 - AluJb SINE Alu -22 290 152 2197 125 0 0 chr3 112897804 112898100 -114626478 - AluSx SINE Alu -16 296 1 1376 157 0 67 chr3 112898100 112898194 -114626384 - AluJb SINE Alu -160 152 53 436 152 0 0 chr3 112898227 112898293 -114626285 - AluJb SINE Alu -246 66 1 695 219 60 5 chr3 112898334 112898651 -114625927 + MER114 LTR ERV 2 383 -265 703 230 0 0 chr3 112898652 112898787 -114625791 + FLAM_C SINE Alu 1 135 -8 877 234 44 0 chr3 112898791 112899043 -114625535 + MER114 LTR ERV 386 648 0 2253 89 7 20 chr3 112899282 112899585 -114624993 + AluSg SINE Alu 1 299 -11 1346 158 115 29 chr3 112899852 112900130 -114624448 - AluJb SINE Alu -10 302 1 623 171 16 31 chr3 112900413 112900542 -114624036 + FLAM_A SINE Alu 1 127 -6 2492 66 0 3 chr3 112900674 112900975 -114623603 - AluY SINE Alu -11 300 1 2071 115 37 0 chr3 112901282 112901577 -114623001 + AluSq SINE Alu 1 306 -7 243 245 0 0 chr3 112902001 112902054 -114622524 + MER94 DNA DNA 78 130 -4 250 150 0 0 chr3 112902308 112902348 -114622230 + LTR23 LTR ERV1 320 359 -78 25 0 0 0 chr3 112902348 112902373 -114622205 + AT_rich Low_complexity Low_complexity 1 25 0 244 304 0 38 chr3 112902504 112902583 -114621995 - MER5A DNA MER1_type -100 89 14 326 333 93 8 chr3 112903058 112903187 -114621391 - L2 LINE L2 -1 3271 3132 546 287 114 16 chr3 112903374 112903691 -114620887 - L1ME LINE L1 -385 5736 5389 2189 122 3 13 chr3 112903847 112904151 -114620427 - AluSx SINE Alu -11 301 1 351 225 69 41 chr3 112904780 112904960 -114619618 - MER34 LTR ERV1 -73 469 228 200 59 29 0 chr3 112904960 112904994 -114619584 + (TTG)n Simple_repeat Simple_repeat 3 37 0 351 225 69 41 chr3 112904994 112905017 -114619561 - MER34 LTR ERV1 -314 228 207 2105 75 0 11 chr3 112905022 112905289 -114619289 + AluSg SINE Alu 40 303 -7 1120 179 5 34 chr3 112905671 112905878 -114618700 - AluJo SINE Alu -26 286 86 295 175 25 25 chr3 112907799 112907879 -114616699 + MER116 DNA Mariner 1 80 0 1815 110 28 88 chr3 112908558 112908751 -114615827 - AluSx SINE Alu -14 298 95 216 97 0 0 chr3 112908751 112908782 -114615796 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2140 100 4 0 chr3 112908782 112909063 -114615515 - AluSx SINE Alu -30 282 1 1815 110 28 88 chr3 112909063 112909185 -114615393 - AluSx SINE Alu -215 97 1 21 0 0 0 chr3 112909881 112909902 -114614676 + AT_rich Low_complexity Low_complexity 1 21 0 1266 210 119 25 chr3 112909974 112910416 -114614162 + MLT1D LTR MaLR 1 466 -1 1391 173 56 96 chr3 112910646 112910708 -114613870 - MLT2D LTR ERVL 0 414 351 691 32 11 11 chr3 112910708 112910803 -114613775 + (TAGA)n Simple_repeat Simple_repeat 3 97 0 1391 173 56 96 chr3 112910803 112911169 -114613409 - MLT2D LTR ERVL -63 351 3 217 203 34 0 chr3 112911527 112911586 -114612992 + CT-rich Low_complexity Low_complexity 1 61 0 1955 158 0 10 chr3 112911606 112911904 -114612674 - AluJb SINE Alu -17 295 1 229 246 43 0 chr3 112913983 112914052 -114610526 - MIR SINE MIR -17 245 174 811 247 67 76 chr3 112914175 112914596 -114609982 + MLT1L LTR MaLR 199 615 0 596 250 138 30 chr3 112915109 112915341 -114609237 + L1ME1 LINE L1 5884 6140 -26 2234 172 20 20 chr3 112915682 112916193 -114608385 + L1M4 LINE L1 3893 4403 -1743 1343 146 64 79 chr3 112916203 112916328 -114608250 + AluJo SINE Alu 2 127 -185 2232 128 0 0 chr3 112916328 112916624 -114607954 + AluSx SINE Alu 1 296 -16 1343 146 64 79 chr3 112916624 112916778 -114607800 + AluJo SINE Alu 127 277 -35 224 211 35 0 chr3 112916800 112916857 -114607721 + (TA)n Simple_repeat Simple_repeat 2 60 0 2688 197 36 44 chr3 112916857 112917655 -114606923 + L1M4 LINE L1 4397 5188 -958 2558 32 6 6 chr3 112917975 112918289 -114606289 - AluYb8 SINE Alu -4 314 1 1490 158 0 5 chr3 112918683 112918904 -114605674 + AluSx SINE Alu 1 220 -92 395 182 0 11 chr3 112918909 112918997 -114605581 + A-rich Low_complexity Low_complexity 2 88 0 295 356 61 17 chr3 112919000 112919072 -114605506 + MIR SINE MIR 75 142 -120 4166 148 22 25 chr3 112919072 112919804 -114604774 - MER44D DNA MER2_type 0 605 4 295 356 61 17 chr3 112919804 112919911 -114604667 + MIR SINE MIR 142 262 0 1810 164 31 16 chr3 112920380 112920894 -114603684 + L1M3 LINE L1 5175 5733 -438 2399 85 0 0 chr3 112921091 112921386 -114603192 - AluSq SINE Alu -18 295 1 468 296 44 38 chr3 112922542 112922701 -114601877 - MIR3 SINE MIR -19 189 30 544 299 11 60 chr3 112923171 112923355 -114601223 + MER5B DNA MER1_type 1 175 -3 188 294 0 20 chr3 112923443 112923494 -114601084 + L2 LINE L2 3255 3304 -9 256 249 42 143 chr3 112923817 112924034 -114600544 - L2 LINE L2 -230 3042 2848 32 81 0 0 chr3 112924172 112924246 -114600332 + AT_rich Low_complexity Low_complexity 1 74 0 2428 194 44 21 chr3 112925723 112926243 -114598335 + MLT1F LTR MaLR 1 532 -10 233 237 0 79 chr3 112926527 112926603 -114597975 - L2 LINE L2 -5 3308 3239 26 0 0 0 chr3 112926934 112926960 -114597618 + AT_rich Low_complexity Low_complexity 1 26 0 1525 136 9 0 chr3 112926971 112927185 -114597393 + AluSg/x SINE Alu 91 306 -6 911 243 0 0 chr3 112927271 112927448 -114597130 - MER45A DNA AcHobo -1 177 1 836 186 77 0 chr3 112928462 112928656 -114595922 + MER115 DNA AcHobo 480 688 -5 23 0 0 0 chr3 112928905 112928928 -114595650 + GC_rich Low_complexity Low_complexity 1 23 0 262 340 39 89 chr3 112930456 112930532 -114594046 - L2 LINE L2 -215 3057 2979 863 148 172 55 chr3 112930532 112930604 -114593974 - MER33 DNA MER1_type -2261 324 262 2408 73 3 0 chr3 112930604 112930907 -114593671 + AluSx SINE Alu 1 304 -8 863 148 172 55 chr3 112930907 112931124 -114593454 - MER33 DNA MER1_type -2323 262 1 262 340 39 89 chr3 112931124 112931167 -114593411 - L2 LINE L2 -293 2979 2935 3595 49 2 2 chr3 112931167 112931615 -114592963 - LTR7 LTR ERV1 -2 448 1 262 340 39 89 chr3 112931615 112931697 -114592881 - L2 LINE L2 -337 2935 2865 180 0 0 0 chr3 112932326 112932346 -114592232 + (TTTTG)n Simple_repeat Simple_repeat 4 23 0 303 146 0 0 chr3 112932348 112932396 -114592182 - FLAM_A SINE Alu -17 116 69 200 200 18 0 chr3 112932439 112932494 -114592084 + CT-rich Low_complexity Low_complexity 2 57 0 201 255 0 21 chr3 112932635 112932682 -114591896 - L2 LINE L2 -88 3225 3180 515 294 59 18 chr3 112932992 112933162 -114591416 - MER5A DNA MER1_type 0 189 13 264 160 0 20 chr3 112933312 112933362 -114591216 + L2 LINE L2 3221 3269 -3 26 0 0 0 chr3 112933613 112933639 -114590939 + AT_rich Low_complexity Low_complexity 1 26 0 2077 129 3 0 chr3 112934437 112934731 -114589847 - AluSx SINE Alu -17 295 1 181 343 30 15 chr3 112935109 112935176 -114589402 - L2 LINE L2 0 3272 3205 1004 109 18 6 chr3 112935770 112935935 -114588643 - MER46A DNA MER2_type -68 168 2 1510 154 56 15 chr3 112936055 112936321 -114588257 + AluJo SINE Alu 5 281 -31 456 210 48 40 chr3 112938286 112938410 -114586168 + L2 LINE L2 3188 3312 -1 1977 103 33 0 chr3 112941921 112942217 -114582361 - AluSg SINE Alu 0 305 1 376 232 98 24 chr3 112942372 112942536 -114582042 - L1MC5 LINE L1 -32 7929 7754 4544 199 77 16 chr3 112942817 112944076 -114580502 + L1MC4 LINE L1 6702 8037 -5 2256 84 3 50 chr3 112944588 112944909 -114579669 - AluSx SINE Alu -6 306 1 582 209 39 96 chr3 112945191 112945317 -114579261 + L1MC4a LINE L1 5712 5844 -1964 622 183 15 44 chr3 112945317 112945454 -114579124 - FLAM_A SINE Alu 0 133 1 582 209 39 96 chr3 112945454 112945609 -114578969 + L1MC4a LINE L1 5844 5977 -1831 2476 82 0 0 chr3 112946403 112946706 -114577872 - AluY SINE Alu -8 303 1 23 0 0 0 chr3 112948241 112948264 -114576314 + AT_rich Low_complexity Low_complexity 1 23 0 219 324 78 28 chr3 112949524 112949666 -114574912 + L3 LINE CR1 739 887 -690 999 156 28 14 chr3 112950339 112950550 -114574028 - L1MA7 LINE L1 -13 6278 6065 900 158 12 0 chr3 112950557 112950722 -114573856 - L1MA7 LINE L1 -351 5940 5774 1147 337 103 17 chr3 112950835 112951827 -114572751 - L2 LINE L2 -1 3271 2198 344 252 147 42 chr3 112951830 112951973 -114572605 + MIR SINE MIR 105 262 0 246 309 15 15 chr3 112953429 112953497 -114571081 + L2 LINE L2 3187 3254 -18 303 250 10 42 chr3 112953744 112953840 -114570738 + MIR SINE MIR 98 190 -72 253 279 63 0 chr3 112954354 112954433 -114570145 + MIR SINE MIR 66 149 -59 1782 139 121 23 chr3 112956248 112956636 -114567942 + Tigger2a DNA MER2_type 2 427 -7 2207 92 7 0 chr3 112957171 112957483 -114567095 - AluSx SINE Alu 0 314 1 23 33 0 0 chr3 112957710 112957740 -114566838 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr3 112957961 112957995 -114566583 + AT_rich Low_complexity Low_complexity 1 34 0 3670 33 2 11 chr3 112958008 112958459 -114566119 - L1PA4 LINE L1 -3 6152 5706 279 181 62 25 chr3 112958492 112958652 -114565926 + (TA)n Simple_repeat Simple_repeat 1 166 0 1695 203 25 15 chr3 112959861 112960260 -114564318 - MLT1C LTR MaLR -6 461 59 547 286 103 15 chr3 112960899 112961128 -114563450 + MER102a DNA MER1_type 34 292 -1125 663 37 0 0 chr3 112961128 112961210 -114563368 + (TTATG)n Simple_repeat Simple_repeat 4 85 0 547 286 103 15 chr3 112961210 112961253 -114563325 + MER102a DNA MER1_type 292 330 0 304 219 70 55 chr3 112962183 112962311 -114562267 - L1ME4a LINE L1 -12 6109 5980 2512 40 0 17 chr3 112963373 112963672 -114560906 + AluY SINE Alu 1 294 -17 201 217 65 0 chr3 112963856 112963902 -114560676 + L3 LINE CR1 1524 1572 -5 587 348 16 8 chr3 112964629 112964873 -114559705 - MIR SINE MIR -15 247 2 198 313 73 31 chr3 112966106 112966202 -114558376 - L2 LINE L2 -5 3308 3209 760 295 11 41 chr3 112966309 112966580 -114557998 - Charlie8 DNA MER1_type -2145 272 10 1637 179 10 32 chr3 112967228 112967541 -114557037 + AluJb SINE Alu 1 306 -6 31 0 0 0 chr3 112967786 112967817 -114556761 + AT_rich Low_complexity Low_complexity 1 31 0 739 267 54 42 chr3 112968270 112968510 -114556068 - MIR SINE MIR 0 262 20 789 176 0 7 chr3 112968525 112968678 -114555900 - L1MB3 LINE L1 -8 6175 6024 2554 64 0 0 chr3 112968754 112969065 -114555513 - AluY SINE Alu 0 311 1 254 271 146 0 chr3 112969237 112969333 -114555245 - HsTC2 DNA Tc2 -1750 148 39 235 270 76 54 chr3 112969522 112969643 -114554935 + MIR SINE MIR 26 167 -41 186 362 85 11 chr3 112971611 112971705 -114552873 - L2 LINE L2 -3 3269 3169 549 195 0 128 chr3 112971816 112971965 -114552613 + MER5A DNA MER1_type 60 189 0 333 257 62 61 chr3 112971976 112972152 -114552426 - MIR SINE MIR -69 139 15 917 220 33 0 chr3 112972525 112972707 -114551871 + MER5A DNA MER1_type 2 189 0 2748 3 0 0 chr3 112973168 112973462 -114551116 - AluYa5 SINE Alu 0 311 18 288 0 0 0 chr3 112973815 112973847 -114550731 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 241 291 112 28 chr3 112974776 112974955 -114549623 + L1ME LINE L1 5406 5599 -522 261 0 0 0 chr3 112974999 112975028 -114549550 + (TG)n Simple_repeat Simple_repeat 2 30 0 663 251 35 10 chr3 112975058 112975261 -114549317 + MER46C DNA MER2_type 80 287 -51 1713 110 0 0 chr3 112975268 112975495 -114549083 - AluSg/x SINE Alu -8 304 78 2206 122 3 0 chr3 112977262 112977574 -114547004 - AluSq SINE Alu 0 313 1 207 0 0 0 chr3 112977734 112977757 -114546821 + (T)n Simple_repeat Simple_repeat 1 23 0 1076 243 14 0 chr3 112979801 112980019 -114544559 + MER58A DNA MER1_type 1 221 -3 2353 119 0 0 chr3 112981336 112981648 -114542930 - AluSx SINE Alu 0 312 1 215 135 0 27 chr3 112982196 112982233 -114542345 + (TTTTC)n Simple_repeat Simple_repeat 2 37 0 197 213 149 0 chr3 112982453 112982500 -114542078 + MIR SINE MIR 87 140 -68 298 276 126 11 chr3 112982555 112982642 -114541936 - MER5A DNA MER1_type -87 102 6 204 299 117 0 chr3 112982617 112982694 -114541884 + MIR3 SINE MIR 116 201 -7 * 182 247 68 68 chr3 112982938 112983011 -114541567 + L2 LINE L2 2727 2799 -515 1599 178 55 0 chr3 112984301 112984576 -114540002 + AluJb SINE Alu 7 296 -16 330 219 0 0 chr3 112985063 112985136 -114539442 - MLT1H LTR MaLR 0 549 477 1427 83 79 14 chr3 112985149 112985261 -114539317 + MER30 DNA MER1_type 1 104 -126 2072 125 0 10 chr3 112985261 112985564 -114539014 + AluSx SINE Alu 1 300 -12 1427 83 79 14 chr3 112985564 112985667 -114538911 + MER30 DNA MER1_type 104 230 0 514 277 46 11 chr3 112985815 112986034 -114538544 - MLT1H1 LTR MaLR -330 213 1 21 0 0 0 chr3 112986782 112986803 -114537775 + AT_rich Low_complexity Low_complexity 1 21 0 859 148 7 7 chr3 112986803 112986938 -114537640 - AluJo SINE Alu -177 135 1 508 276 63 17 chr3 112987039 112987213 -114537365 - MER5A DNA MER1_type -1 188 7 180 281 109 0 chr3 112987911 112987975 -114536603 - L3b LINE CR1 -257 1326 1256 812 146 93 13 chr3 112988463 112988614 -114535964 - MER20 DNA MER1_type -46 173 11 916 239 0 0 chr3 112989978 112990166 -114534412 + MER5A DNA MER1_type 2 189 0 803 137 8 8 chr3 112990397 112990528 -114534050 - FLAM_C SINE Alu -1 132 2 247 295 320 0 chr3 112991747 112991869 -114532709 + MER5B DNA MER1_type 3 163 -15 3028 220 41 48 chr3 112993372 112994485 -114530093 - L1ME1 LINE L1 -18 6148 5044 2303 94 20 0 chr3 112994488 112994786 -114529792 - AluSx SINE Alu -8 304 1 454 283 87 14 chr3 112996467 112996605 -114527973 + MIR3 SINE MIR 40 187 -21 2610 55 0 0 chr3 112997661 112997969 -114526609 + AluY SINE Alu 3 310 -1 719 269 0 28 chr3 112998551 112998733 -114525845 + MIR SINE MIR 5 181 -81 323 167 15 0 chr3 112998759 112998825 -114525753 - Charlie2a DNA MER1_type -37 2825 2759 238 148 37 12 chr3 112998833 112998914 -114525664 - Charlie2a DNA MER1_type -1847 1015 933 365 254 131 0 chr3 112999121 112999251 -114525327 - Charlie2a DNA MER1_type -2714 148 2 386 267 0 0 chr3 112999252 112999338 -114525240 + MIR SINE MIR 174 259 -3 237 245 122 0 chr3 112999933 113000031 -114524547 - L1ME4a LINE L1 -5 6116 6007 22 94 0 0 chr3 113000057 113000121 -114524457 + AT_rich Low_complexity Low_complexity 1 64 0 1996 214 48 23 chr3 113000128 113001332 -114523246 - L1MD1 LINE L1 0 6242 4886 2372 77 10 19 chr3 113001332 113001644 -114522934 - AluY SINE Alu -2 309 1 1996 214 48 23 chr3 113001644 113001976 -114522602 - L1MD1 LINE L1 -1356 4886 4564 374 212 0 0 chr3 113002005 113002071 -114522507 - MER2 DNA MER2_type 0 345 280 27 62 0 0 chr3 113002071 113002119 -114522459 + AT_rich Low_complexity Low_complexity 1 48 0 6800 126 12 2 chr3 113002127 113003575 -114521003 + L1MA2 LINE L1 4843 6304 0 316 45 0 0 chr3 113003598 113003642 -114520936 - MER2 DNA MER2_type -138 207 164 1703 150 28 31 chr3 113003644 113003970 -114520608 + MER1B DNA MER1_type 15 339 0 899 201 0 0 chr3 113003970 113004139 -114520439 - MER2 DNA MER2_type -174 171 3 410 194 40 40 chr3 113004142 113004266 -114520312 - L1MD1 LINE L1 -1609 4537 4414 763 289 34 13 chr3 113004947 113005182 -114519396 + MIR SINE MIR 23 262 0 242 320 21 31 chr3 113006185 113006282 -114518296 + MIR SINE MIR 77 172 -90 328 211 0 0 chr3 113006329 113006386 -114518192 - L2 LINE L2 -2 3311 3255 315 366 132 10 chr3 113006517 113006927 -114517651 - L2 LINE L2 -2511 803 344 415 300 119 19 chr3 113006989 113007199 -114517379 - MIR SINE MIR -12 250 20 6347 27 3 0 chr3 113008281 113009023 -114515555 - L1PA4 LINE L1 -3 6152 5409 22 0 0 0 chr3 113014530 113014552 -114510026 + AT_rich Low_complexity Low_complexity 1 22 0 324 243 162 37 chr3 113015054 113015190 -114509388 - MIR SINE MIR -98 164 12 196 235 37 74 chr3 113015770 113015851 -114508727 + MIR3 SINE MIR 100 177 -31 1668 214 60 20 chr3 113015982 113016430 -114508148 - L1ME1 LINE L1 -10 6156 5691 184 329 43 0 chr3 113017938 113018008 -114506570 + MIR SINE MIR 92 164 -98 425 245 9 38 chr3 113018521 113018627 -114505951 + L2 LINE L2 3210 3312 -1 243 61 0 0 chr3 113021047 113021080 -114503498 + (TG)n Simple_repeat Simple_repeat 2 34 0 213 217 17 33 chr3 113021705 113021765 -114502813 - L2 LINE L2 -1 3312 3254 * 370 310 65 52 chr3 113021737 113021969 -114502609 - MIR SINE MIR -8 254 20 437 174 32 11 chr3 113021976 113022083 -114502495 - L1MC4 LINE L1 -10 8031 7880 753 51 0 0 chr3 113022092 113022190 -114502388 + (TC)n Simple_repeat Simple_repeat 1 98 0 2020 210 206 27 chr3 113022340 113023451 -114501127 - L1MC4 LINE L1 -198 7844 6446 229 324 88 0 chr3 113023743 113023811 -114500767 - L2 LINE L2 -52 3220 3147 541 321 14 14 chr3 113023873 113024082 -114500496 - MIR SINE MIR -49 213 5 1031 216 41 28 chr3 113024173 113024402 -114500176 + MER33 DNA MER1_type 1 237 -2348 2031 171 58 2 chr3 113024402 113024462 -114500116 + L1MB4 LINE L1 5714 5769 -411 477 50 0 0 chr3 113024462 113024522 -114500056 + (TA)n Simple_repeat Simple_repeat 1 60 0 2031 171 58 2 chr3 113024522 113024888 -114499690 + L1MB4 LINE L1 5769 6164 -16 1031 216 41 28 chr3 113024888 113024978 -114499600 + MER33 DNA MER1_type 237 324 0 297 258 54 21 chr3 113025641 113025734 -114498844 + MIR3 SINE MIR 110 205 -3 251 271 82 109 chr3 113027214 113027543 -114497035 - L2 LINE L2 -39 3233 2914 4166 68 34 68 chr3 113027736 113028386 -114496192 - L1PA8 LINE L1 -5 6167 5540 814 313 97 22 chr3 113029579 113030215 -114494363 - L2 LINE L2 0 3313 2633 2584 50 0 0 chr3 113033353 113033651 -114490927 + AluY SINE Alu 1 298 -13 241 253 195 0 chr3 113034777 113034864 -114489714 + L2 LINE L2 2907 3010 -262 1247 225 89 61 chr3 113035158 113035773 -114488805 - L1ME2 LINE L1 -1 6165 5705 552 319 38 0 chr3 113035775 113035935 -114488643 + L2 LINE L2 3107 3272 0 216 294 109 11 chr3 113037110 113037202 -114487376 - L2 LINE L2 -36 3236 3136 429 248 101 7 chr3 113037276 113037425 -114487153 + MER58A DNA MER1_type 37 199 -25 244 363 48 0 chr3 113037549 113037695 -114486883 - L2 LINE L2 -1239 2075 1923 * 975 285 16 12 chr3 113037683 113037939 -114486639 - MIR SINE MIR -1 261 5 380 283 38 1 chr3 113038036 113038154 -114486424 - MIR SINE MIR -48 160 39 1560 200 14 3 chr3 113038760 113039045 -114485533 + AluJo SINE Alu 1 288 -24 2481 78 0 0 chr3 113039174 113039481 -114485097 + AluY SINE Alu 1 307 -4 566 270 103 55 chr3 113039555 113040159 -114484419 + L1ME4a LINE L1 5476 6108 -13 1015 230 23 4 chr3 113040862 113041119 -114483459 - L1MDa LINE L1 -1894 4646 4385 * 1997 211 25 48 chr3 113041100 113041960 -114482618 - L1MDa LINE L1 -3358 3182 2347 3046 204 18 58 chr3 113041979 113042721 -114481857 - L1MDa LINE L1 -5811 729 18 2280 90 0 23 chr3 113042849 113043150 -114481428 + AluSx SINE Alu 1 294 -18 1635 213 95 47 chr3 113043157 113043651 -114480927 - MLT2B1 LTR ERVL -2 518 1 439 298 60 24 chr3 113044139 113044307 -114480271 + MIR SINE MIR 74 247 -15 296 300 66 33 chr3 113044320 113044563 -114480015 - L1ME4a LINE L1 -243 5878 5628 2189 138 0 6 chr3 113044950 113045261 -114479317 - AluJo SINE Alu -1 311 3 442 93 67 0 chr3 113045674 113045749 -114478829 + MADE1 DNA Mariner 1 80 0 1867 169 3 7 chr3 113045769 113046070 -114478508 - AluJb SINE Alu -12 300 1 474 294 62 0 chr3 113046271 113046431 -114478147 + MIR SINE MIR 92 261 -1 24 32 0 0 chr3 113046435 113046466 -114478112 + AT_rich Low_complexity Low_complexity 1 31 0 253 234 227 8 chr3 113046858 113046986 -114477592 - MIR SINE MIR 0 262 107 248 239 193 0 chr3 113047406 113047494 -114477084 + L2 LINE L2 3209 3313 0 1089 234 140 58 chr3 113048930 113049431 -114475147 - MLT1F LTR MaLR 0 542 1 469 268 55 98 chr3 113049436 113049783 -114474795 - MLT1B-int LTR MaLR -6 1365 1034 418 264 132 14 chr3 113050335 113050555 -114474023 - MLT1B-int LTR MaLR -835 536 291 1018 235 28 48 chr3 113050733 113051090 -114473488 - L1ME2 LINE L1 -10 6154 5805 1697 174 90 14 chr3 113051097 113051454 -114473124 - MLT1B LTR MaLR -6 384 1 489 194 21 74 chr3 113051454 113051530 -114473048 - L1ME2 LINE L1 -355 5809 5743 2254 116 3 3 chr3 113051530 113051840 -114472738 - AluSx SINE Alu 0 312 3 489 194 21 74 chr3 113051840 113051928 -114472650 - L1ME2 LINE L1 -421 5743 5652 410 81 176 0 chr3 113051940 113052014 -114472564 - L1MA5A LINE L1 -5 6292 6206 601 251 101 19 chr3 113052016 113052223 -114472355 - L1ME2 LINE L1 -490 5674 5451 22 0 0 0 chr3 113052320 113052342 -114472236 + AT_rich Low_complexity Low_complexity 1 22 0 1963 127 3 29 chr3 113052380 113052688 -114471890 + AluSx SINE Alu 1 300 -12 2506 259 107 60 chr3 113052769 113053158 -114471420 - HAL1 LINE L1 -183 2324 1955 207 0 0 0 chr3 113053158 113053181 -114471397 + (TTTTG)n Simple_repeat Simple_repeat 1 23 0 2506 259 107 60 chr3 113053181 113053827 -114470751 - HAL1 LINE L1 -552 1955 1341 1581 173 28 14 chr3 113053827 113053988 -114470590 - AluJo SINE Alu -24 288 131 2403 97 0 0 chr3 113053988 113054298 -114470280 - AluSg SINE Alu 0 310 1 2496 71 0 0 chr3 113054298 113054606 -114469972 - AluY SINE Alu -3 308 1 189 0 0 0 chr3 113054611 113054632 -114469946 + (TTG)n Simple_repeat Simple_repeat 1 21 0 1581 173 28 14 chr3 113054632 113054747 -114469831 - AluJo SINE Alu -184 128 1 2506 259 107 60 chr3 113054747 113055337 -114469241 - HAL1 LINE L1 -1166 1341 621 631 263 52 134 chr3 113055362 113055803 -114468775 - HAL1 LINE L1 -1995 512 108 265 290 47 20 chr3 113058266 113058401 -114466177 - MIR SINE MIR -47 161 30 841 161 0 0 chr3 113060219 113060343 -114464235 + FLAM_C SINE Alu 4 127 -16 2223 117 0 3 chr3 113060382 113060681 -114463897 + AluSx SINE Alu 1 298 -14 1034 158 0 6 chr3 113061228 113061393 -114463185 - FRAM SINE Alu -13 163 1 21 36 0 0 chr3 113061401 113061429 -114463149 + AT_rich Low_complexity Low_complexity 1 28 0 412 291 74 40 chr3 113062705 113062880 -114461698 + MER5A DNA MER1_type 2 182 -7 251 193 35 0 chr3 113063000 113063057 -114461521 + (TATTG)n Simple_repeat Simple_repeat 2 60 0 29 28 0 0 chr3 113063111 113063147 -114461431 + AT_rich Low_complexity Low_complexity 1 36 0 718 352 53 4 chr3 113063216 113063741 -114460837 - L1ME3 LINE L1 -333 5829 5338 573 268 55 12 chr3 113064197 113064361 -114460217 + MIR3 SINE MIR 33 203 -5 1728 147 0 34 chr3 113064446 113064738 -114459840 - AluJo SINE Alu -30 282 1 283 296 44 44 chr3 113064885 113065044 -114459534 + MIR SINE MIR 98 256 -6 22 88 0 0 chr3 113065142 113065199 -114459379 + AT_rich Low_complexity Low_complexity 1 57 0 1296 253 56 27 chr3 113065557 113065933 -114458645 - L2 LINE L2 -13 3300 2914 444 228 53 18 chr3 113065921 113066035 -114458543 - L2 LINE L2 -554 2760 2643 * 706 185 8 23 chr3 113066104 113066234 -114458344 + FLAM_C SINE Alu 2 129 -4 310 318 18 50 chr3 113066297 113066517 -114458061 + L1M4 LINE L1 4488 4700 -1446 300 154 0 0 chr3 113066554 113066606 -114457972 + (TA)n Simple_repeat Simple_repeat 1 52 0 496 293 34 11 chr3 113066638 113066904 -114457674 + L1M4 LINE L1 4752 5023 -1123 628 222 91 36 chr3 113068575 113068796 -114455782 + Charlie8 DNA MER1_type 55 287 -2130 261 210 0 0 chr3 113068866 113068928 -114455650 + CT-rich Low_complexity Low_complexity 3 64 0 383 270 82 13 chr3 113070974 113071133 -114453445 - MIR SINE MIR -6 256 87 796 269 56 4 chr3 113071487 113071721 -114452857 + MIR SINE MIR 14 259 -3 27 29 0 0 chr3 113072213 113072247 -114452331 + AT_rich Low_complexity Low_complexity 1 34 0 509 225 108 53 chr3 113072608 113072950 -114451628 - L1ME4a LINE L1 -133 5988 5628 564 172 0 0 chr3 113072974 113073061 -114451517 + AluS SINE Alu 1 87 -225 184 271 0 0 chr3 113073419 113073467 -114451111 + MIR3 SINE MIR 152 199 -9 195 129 0 0 chr3 113074964 113074995 -114449583 + (CA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr3 113075368 113075389 -114449189 + AT_rich Low_complexity Low_complexity 1 21 0 773 173 0 8 chr3 113075391 113075518 -114449060 + FLAM_C SINE Alu 2 127 -16 195 39 0 0 chr3 113075518 113075527 -114449051 + (TAA)n Simple_repeat Simple_repeat 3 11 -17 1938 161 0 0 chr3 113075527 113075813 -114448765 + AluSx SINE Alu 1 286 -26 195 39 0 0 chr3 113075813 113075829 -114448749 + (TAA)n Simple_repeat Simple_repeat 10 28 0 265 205 154 43 chr3 113076368 113076485 -114448093 + MIR SINE MIR 79 208 -54 2016 141 138 21 chr3 113076530 113076913 -114447665 - MSTA LTR MaLR 0 428 1 9717 120 18 32 chr3 113076914 113078516 -114446062 - MSTA-int LTR MaLR 0 1580 3 1955 160 144 3 chr3 113078518 113078893 -114445685 - MSTA LTR MaLR 0 428 1 3488 187 43 27 chr3 113078997 113079890 -114444688 - L1MC4a LINE L1 0 7808 6902 252 306 145 52 chr3 113079907 113080100 -114444478 - MIR SINE MIR -5 257 47 206 172 47 16 chr3 113080715 113080779 -114443799 + (TA)n Simple_repeat Simple_repeat 2 67 0 1058 170 0 0 chr3 113080922 113081087 -114443491 - FRAM SINE Alu 0 166 2 516 170 19 9 chr3 113081181 113081287 -114443291 + MER20 DNA MER1_type 113 219 0 1542 163 39 92 chr3 113081445 113081882 -114442696 + MLT2D LTR ERVL 1 414 0 2285 108 0 7 chr3 113083832 113084139 -114440439 - AluSg SINE Alu -5 305 1 2187 101 28 0 chr3 113084756 113085042 -114439536 + AluSx SINE Alu 3 296 -16 212 229 143 38 chr3 113086323 113086428 -114438150 - MIR SINE MIR -74 134 19 344 248 56 48 chr3 113088011 113088136 -114436442 - MIR3 SINE MIR -17 191 66 402 236 81 0 chr3 113088292 113088453 -114436125 - LTR16B LTR ERVL -2 462 289 1013 226 88 3 chr3 113088766 113089049 -114435529 + LTR16B LTR ERVL 4 310 -154 186 189 0 0 chr3 113089053 113089090 -114435488 + CT-rich Low_complexity Low_complexity 2 38 0 207 0 0 0 chr3 113089125 113089148 -114435430 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 193 393 0 0 chr3 113090017 113090073 -114434505 + L2 LINE L2 3201 3256 -16 195 216 0 0 chr3 113090454 113090491 -114434087 - MIR SINE MIR -9 253 217 * 208 320 0 0 chr3 113090458 113090508 -114434070 - L2 LINE L2 -19 3294 3245 2711 45 0 0 chr3 113090527 113090836 -114433742 + AluY SINE Alu 1 309 -2 1956 151 20 0 chr3 113091198 113091496 -114433082 - AluJo SINE Alu -8 304 1 294 250 68 0 chr3 113092298 113092386 -114432192 + L1ME3A LINE L1 6065 6158 -12 306 308 47 9 chr3 113092389 113092496 -114432082 + MLT1J2 LTR MaLR 294 404 -46 2853 7 0 0 chr3 113093549 113093853 -114430725 - AluYb8 SINE Alu -14 304 1 1474 158 0 5 chr3 113094247 113094468 -114430110 + AluSx SINE Alu 1 220 -92 395 182 0 11 chr3 113094473 113094561 -114430017 + A-rich Low_complexity Low_complexity 2 88 0 270 352 67 17 chr3 113094564 113094636 -114429942 + MIR SINE MIR 75 142 -120 4516 148 22 25 chr3 113094636 113095368 -114429210 - MER44D DNA MER2_type 0 605 4 270 352 67 17 chr3 113095368 113095474 -114429104 + MIR SINE MIR 142 262 0 4170 163 69 25 chr3 113095943 113096602 -114427976 + L1MB3 LINE L1 5175 5887 -296 2461 51 0 35 chr3 113096602 113096918 -114427660 + AluY SINE Alu 1 305 -6 4170 163 69 25 chr3 113096918 113097188 -114427390 + L1MB3 LINE L1 5887 6144 -39 233 139 0 0 chr3 113098280 113098316 -114426262 - L1MB3 LINE L1 -35 6148 6113 236 197 66 0 chr3 113099966 113100042 -114424536 + L1MC5 LINE L1 7610 7690 -271 21 0 0 0 chr3 113100047 113100068 -114424510 + AT_rich Low_complexity Low_complexity 1 21 0 6015 127 7 0 chr3 113100078 113100927 -114423651 + Tigger1 DNA MER2_type 1 855 -1563 1723 184 13 0 chr3 113100927 113101226 -114423352 + AluJb SINE Alu 3 305 -7 798 137 12 19 chr3 113101240 113101401 -114423177 + GA-rich Low_complexity Low_complexity 2 161 0 9819 113 22 19 chr3 113101402 113101670 -114422908 + Tigger1 DNA MER2_type 845 1111 -1307 1922 107 4 0 chr3 113101670 113101922 -114422656 - AluSq SINE Alu -11 302 50 9819 113 22 19 chr3 113101922 113102280 -114422298 + Tigger1 DNA MER2_type 1111 1466 -952 1813 177 3 6 chr3 113102280 113102591 -114421987 + AluJb SINE Alu 1 310 -2 9819 113 22 19 chr3 113102591 113103201 -114421377 + Tigger1 DNA MER2_type 1466 2090 -328 2307 89 0 0 chr3 113103201 113103492 -114421086 + AluSg SINE Alu 2 292 -18 9819 113 22 19 chr3 113103492 113103735 -114420843 + Tigger1 DNA MER2_type 2090 2331 -87 737 275 18 14 chr3 113104360 113104582 -114419996 + Tigger1 DNA MER2_type 2196 2418 0 366 230 27 117 chr3 113104582 113104642 -114419936 + L1MC5 LINE L1 7724 7788 -173 2155 132 0 0 chr3 113104642 113104945 -114419633 + AluSx SINE Alu 1 303 -9 366 230 27 117 chr3 113104945 113105106 -114419472 + L1MC5 LINE L1 7788 7925 -36 766 205 21 16 chr3 113105189 113105379 -114419199 + L1MC2 LINE L1 4978 5168 -978 662 165 0 0 chr3 113105393 113105496 -114419082 + FLAM_A SINE Alu 37 139 -3 3972 123 29 32 chr3 113105497 113106150 -114418428 + L1MC2 LINE L1 5390 6340 0 430 150 38 0 chr3 113106150 113106230 -114418348 + L1MC2 LINE L1 6262 6344 0 427 289 51 13 chr3 113106365 113106521 -114418057 + MER5A DNA MER1_type 7 168 -21 180 0 0 0 chr3 113107009 113107029 -114417549 + (A)n Simple_repeat Simple_repeat 1 20 0 844 205 0 23 chr3 113107131 113107302 -114417276 + FRAM SINE Alu 1 167 -9 191 330 170 0 chr3 113107686 113107792 -114416786 + L2 LINE L2 3138 3261 -11 180 0 0 0 chr3 113107792 113107812 -114416766 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 288 0 0 0 chr3 113108129 113108161 -114416417 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 2347 239 78 10 chr3 113108689 113109317 -114415261 + L1ME3A LINE L1 5469 6139 -31 989 203 56 0 chr3 113109612 113109693 -114414885 - AluJo SINE Alu -100 212 137 235 43 22 43 chr3 113109693 113109739 -114414839 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 989 203 56 0 chr3 113109739 113109854 -114414724 - AluJo SINE Alu -175 137 5 636 198 9 0 chr3 113109932 113110038 -114414540 + FLAM_C SINE Alu 2 108 -35 980 73 0 0 chr3 113110042 113110166 -114414412 + HERVL LTR ERVL 327 450 -5204 1157 152 5 0 chr3 113110178 113110362 -114414216 + AluJo SINE Alu 120 304 -8 2869 100 31 0 chr3 113110385 113110776 -114413802 + MLT2A2 LTR ERVL 1 403 -50 36134 67 12 3 chr3 113110789 113110846 -114413732 + HERVL-A2 LTR ERVL 1089 1144 -4510 2120 110 0 23 chr3 113110846 113111145 -114413433 + AluSp SINE Alu 1 292 -21 180 0 0 0 chr3 113111145 113111165 -114413413 + (TA)n Simple_repeat Simple_repeat 2 21 0 36134 67 12 3 chr3 113111165 113115633 -114408945 + HERVL-A2 LTR ERVL 1143 5654 0 3221 108 46 0 chr3 113115633 113116066 -114408512 + MLT2A2 LTR ERVL 1 453 0 2121 111 0 51 chr3 113116291 113116606 -114407972 + AluSx SINE Alu 1 299 -13 904 249 125 79 chr3 113116768 113117209 -114407369 - MLT1K LTR MaLR 0 588 128 1435 180 173 3 chr3 113117357 113117434 -114407144 - MER2 DNA MER2_type 0 345 282 2059 156 0 0 chr3 113117434 113117741 -114406837 + AluSx SINE Alu 1 307 -5 1435 180 173 3 chr3 113117741 113117958 -114406620 - MER2 DNA MER2_type -63 282 1 370 283 0 18 chr3 113117958 113118071 -114406507 - L1ME LINE L1 -460 5661 5551 336 132 0 0 chr3 113118117 113118170 -114406408 - L2 LINE L2 0 3313 3261 1290 204 91 11 chr3 113118329 113118594 -114405984 - AluJo SINE Alu -24 288 3 253 175 0 0 chr3 113119394 113119434 -114405144 - MIR3 SINE MIR -36 172 133 1597 167 22 63 chr3 113120119 113120437 -114404141 - AluJb SINE Alu -7 305 1 212 276 98 24 chr3 113120861 113120984 -114403594 - L2 LINE L2 -35 3278 3147 2048 128 3 3 chr3 113121040 113121337 -114403241 + AluSx SINE Alu 1 297 -15 272 308 92 34 chr3 113121978 113122382 -114402196 + LTR16B LTR ERVL 1 447 -3 1998 135 30 76 chr3 113122409 113122759 -114401819 - THE1C LTR MaLR 0 375 43 2283 69 0 0 chr3 113122759 113123035 -114401543 + AluY SINE Alu 33 308 -3 1998 135 30 76 chr3 113123035 113123077 -114401501 - THE1C LTR MaLR -332 43 1 2759 137 2 7 chr3 113123091 113123515 -114401063 - THE1C-int LTR MaLR -14 1637 1216 2755 130 7 9 chr3 113123482 113123578 -114401000 - THE1C-int LTR MaLR -1165 486 391 * 2105 113 24 3 chr3 113123578 113123871 -114400707 + AluSg SINE Alu 1 299 -11 2755 130 7 9 chr3 113123871 113124275 -114400303 - THE1C-int LTR MaLR -1260 391 1 1900 124 112 35 chr3 113124275 113124622 -114399956 - THE1C LTR MaLR 0 375 2 267 342 7 40 chr3 113124623 113124775 -114399803 - MIR SINE MIR -65 197 51 2015 114 38 7 chr3 113124982 113125271 -114399307 + AluSx SINE Alu 1 298 -14 326 300 0 0 chr3 113125647 113125747 -114398831 + G-rich Low_complexity Low_complexity 1 100 0 217 270 99 54 chr3 113126258 113126369 -114398209 + MIR SINE MIR 39 154 -108 1114 143 9 43 chr3 113126761 113126971 -114397607 + AluJo SINE Alu 1 203 -109 7500 78 8 5 chr3 113127364 113128330 -114396248 - LTR5 LTR ERVK 0 969 1 434 201 25 130 chr3 113128431 113128483 -114396095 - LTR41 LTR ERVL -7 766 710 2198 89 4 4 chr3 113128483 113128791 -114395787 - AluSx SINE Alu 0 309 2 434 201 25 130 chr3 113128791 113128820 -114395758 - LTR41 LTR ERVL -63 710 680 1832 156 0 27 chr3 113128820 113129121 -114395457 + AluJo SINE Alu 1 293 -19 434 201 25 130 chr3 113129121 113129275 -114395303 - LTR41 LTR ERVL -93 680 553 1492 273 136 7 chr3 113129275 113129693 -114394885 - MER45C DNA AcHobo 0 953 482 1017 172 30 40 chr3 113129864 113130062 -114394516 - MER20 DNA MER1_type -20 199 4 249 184 61 0 chr3 113131025 113131074 -114393504 + AluYa5 SINE Alu 131 182 -119 1735 184 20 3 chr3 113131100 113131404 -114393174 - AluJb SINE Alu -1 311 3 310 155 17 0 chr3 113131933 113131991 -114392587 + LTR54 LTR ERV1 402 460 -50 436 208 0 107 chr3 113132338 113132419 -114392159 - L1M4 LINE L1 -1465 4681 4622 2342 87 7 0 chr3 113132419 113132708 -114391870 - AluY SINE Alu -20 291 1 436 208 0 107 chr3 113132708 113132775 -114391803 - L1M4 LINE L1 -1524 4622 4549 802 160 24 97 chr3 113132932 113133138 -114391440 + L1MB7 LINE L1 5847 6037 -147 2271 98 0 3 chr3 113135459 113135756 -114388822 - AluSg1 SINE Alu -13 296 1 244 284 0 49 chr3 113135968 113136049 -114388529 - MIR SINE MIR -8 254 178 362 293 12 0 chr3 113136081 113136163 -114388415 + MIR SINE MIR 8 90 -172 500 232 48 8 chr3 113136269 113136394 -114388184 + MIR SINE MIR 105 234 -28 828 114 4 2 chr3 113137075 113137321 -114387257 + AluSx SINE Alu 1 302 -10 22 0 0 0 chr3 113137503 113137525 -114387053 + AT_rich Low_complexity Low_complexity 1 22 0 243 253 95 32 chr3 113137536 113137694 -114386884 - L1ME4a LINE L1 -3 6118 5951 475 218 18 67 chr3 113137737 113137902 -114386676 - L1MC5 LINE L1 -44 7917 7761 2212 104 3 7 chr3 113137950 113138247 -114386331 + AluSq SINE Alu 1 296 -17 259 234 143 26 chr3 113138253 113138407 -114386171 - L1MC5 LINE L1 -308 7653 7482 2076 123 7 3 chr3 113139104 113139397 -114385181 + AluSx SINE Alu 3 296 -16 2222 105 3 3 chr3 113140163 113140457 -114384121 + AluSx SINE Alu 1 294 -18 632 287 39 25 chr3 113141086 113141372 -114383206 + L1MA9 LINE L1 5968 6257 -55 39 0 0 0 chr3 113141380 113141419 -114383159 + AT_rich Low_complexity Low_complexity 1 39 0 216 171 0 0 chr3 113141719 113141760 -114382818 + (TGG)n Simple_repeat Simple_repeat 2 42 0 759 247 12 6 chr3 113141877 113142043 -114382535 + MER5B DNA MER1_type 11 177 -1 221 239 0 0 chr3 113142128 113142174 -114382404 + MER5B DNA MER1_type 4 49 -129 3391 185 92 4 chr3 113142177 113142957 -114381621 - L1MB7 LINE L1 0 6184 5336 375 274 29 0 chr3 113143047 113143149 -114381429 - MER5B DNA MER1_type -73 105 1 2062 143 7 0 chr3 113143571 113143864 -114380714 - AluSx SINE Alu -13 299 5 2000 116 14 0 chr3 113143908 113144185 -114380393 - AluSx SINE Alu -31 281 1 1221 173 0 5 chr3 113144185 113144387 -114380191 - AluSg/x SINE Alu -12 298 98 213 210 16 65 chr3 113144431 113144493 -114380085 + L2 LINE L2 3212 3270 -2 719 212 0 0 chr3 113144858 113144990 -114379588 - FLAM_A SINE Alu -1 132 1 1738 136 19 41 chr3 113145031 113145347 -114379231 + AluJb SINE Alu 1 309 -3 622 275 111 41 chr3 113145477 113145721 -114378857 + MIR SINE MIR 2 262 0 1969 134 3 16 chr3 113146004 113146317 -114378261 + AluJb SINE Alu 1 309 -3 861 101 0 0 chr3 113146827 113146946 -114377632 - L1PA15 LINE L1 -8 6157 6039 220 272 35 9 chr3 113147993 113148107 -114376471 + (TA)n Simple_repeat Simple_repeat 1 117 0 1538 216 99 23 chr3 113148279 113148378 -114376200 - Charlie1b DNA MER1_type -2238 523 433 2252 99 3 3 chr3 113148378 113148671 -114375907 + AluSx SINE Alu 6 298 -14 1538 216 99 23 chr3 113148671 113148858 -114375720 - Charlie1b DNA MER1_type -2328 433 262 1915 97 108 0 chr3 113148858 113149137 -114375441 - AluSq SINE Alu -4 309 1 1538 216 99 23 chr3 113149137 113149335 -114375243 - Charlie1b DNA MER1_type -2499 262 1 432 226 169 16 chr3 113149437 113149561 -114375017 + MIR SINE MIR 56 198 -64 1695 176 0 7 chr3 113149671 113149961 -114374617 - AluJb SINE Alu -12 300 13 216 0 0 0 chr3 113150177 113150201 -114374377 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2314 84 13 0 chr3 113150206 113150505 -114374073 - AluY SINE Alu -8 303 1 242 238 53 164 chr3 113150785 113150974 -114373604 + MIR SINE MIR 25 192 -70 22 0 0 0 chr3 113151148 113151170 -114373408 + AT_rich Low_complexity Low_complexity 1 22 0 2384 103 0 0 chr3 113151322 113151633 -114372945 - AluSx SINE Alu -1 311 1 316 315 45 9 chr3 113151867 113151978 -114372600 - MIR SINE MIR -79 183 69 386 282 0 19 chr3 113152452 113152555 -114372023 + MIR3 SINE MIR 97 197 -11 2513 56 0 7 chr3 113153648 113153950 -114370628 + AluY SINE Alu 1 300 -11 27 49 0 0 chr3 113156001 113156042 -114368536 + AT_rich Low_complexity Low_complexity 1 41 0 198 0 0 0 chr3 113156588 113156610 -114367968 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 2129 77 0 4 chr3 113156610 113156882 -114367696 - AluSq SINE Alu -42 271 1 1928 146 10 7 chr3 113157570 113157871 -114366707 - AluSx SINE Alu -10 302 1 22 35 0 0 chr3 113157873 113157902 -114366676 + AT_rich Low_complexity Low_complexity 1 29 0 436 289 138 29 chr3 113157949 113158260 -114366318 - L1MC4a LINE L1 -1911 5897 5553 707 64 0 0 chr3 113158269 113158363 -114366215 + AluSg/x SINE Alu 206 299 -11 1971 151 3 6 chr3 113159648 113159959 -114364619 - AluSx SINE Alu -2 310 1 21 0 0 0 chr3 113160447 113160468 -114364110 + AT_rich Low_complexity Low_complexity 1 21 0 1923 158 3 3 chr3 113160560 113160863 -114363715 + AluJb SINE Alu 1 303 -9 770 229 92 36 chr3 113161149 113161542 -114363036 - L1MC5 LINE L1 -426 7535 7121 349 374 84 19 chr3 113164380 113164594 -114359984 + MIR SINE MIR 2 229 -33 518 253 124 19 chr3 113164800 113165057 -114359521 - L1ME LINE L1 -299 5822 5539 2448 54 0 7 chr3 113165265 113165563 -114359015 + AluY SINE Alu 1 296 -15 413 233 138 32 chr3 113165565 113165848 -114358730 - L1ME4a LINE L1 -15 6106 5794 1215 148 0 6 chr3 113166010 113166274 -114358304 + AluSx SINE Alu 1 309 -1 2287 100 3 0 chr3 113166679 113166979 -114357599 - AluSg SINE Alu -8 302 2 1853 170 34 28 chr3 113167013 113167401 -114357177 - MLT1B LTR MaLR 0 390 1 25 31 0 0 chr3 113168659 113168691 -114355887 + AT_rich Low_complexity Low_complexity 1 32 0 925 94 0 0 chr3 113169943 113170060 -114354518 + AluY SINE Alu 1 117 -194 257 0 30 0 chr3 113170082 113170115 -114354463 + (TAA)n Simple_repeat Simple_repeat 2 35 0 2171 99 3 32 chr3 113171163 113171475 -114353103 - AluSc SINE Alu -5 304 2 1614 159 17 44 chr3 113171559 113171854 -114352724 + AluJo SINE Alu 1 287 -25 2438 87 3 0 chr3 113172223 113172533 -114352045 - AluSp SINE Alu -2 311 1 560 238 34 20 chr3 113172733 113172880 -114351698 - MIR SINE MIR -33 229 81 198 278 19 0 chr3 113173397 113173451 -114351127 - L2 LINE L2 -949 2365 2311 693 35 0 0 chr3 113173451 113173537 -114351041 + L1PA4 LINE L1 6067 6152 -3 470 261 22 22 chr3 113173552 113173686 -114350892 - L2 LINE L2 -997 2317 2184 2007 122 38 0 chr3 113173882 113174170 -114350408 + AluSx SINE Alu 1 299 -13 277 282 120 43 chr3 113174351 113174585 -114349993 - L1MC4a LINE L1 -1918 5890 5639 255 232 21 21 chr3 113175002 113175097 -114349481 + (TA)n Simple_repeat Simple_repeat 2 96 0 24 32 0 0 chr3 113175334 113175365 -114349213 + AT_rich Low_complexity Low_complexity 1 31 0 2223 104 7 7 chr3 113175715 113176022 -114348556 - AluSx SINE Alu -3 309 3 518 279 54 80 chr3 113176436 113176499 -114348079 - L1MC4 LINE L1 0 8042 7979 2414 70 3 0 chr3 113176499 113176799 -114347779 - AluSp SINE Alu -12 301 1 518 279 54 80 chr3 113176799 113177287 -114347291 - L1MC4 LINE L1 -63 7979 7505 24 0 0 0 chr3 113177600 113177624 -114346954 + AT_rich Low_complexity Low_complexity 1 24 0 182 254 68 17 chr3 113178466 113178525 -114346053 - MER5C DNA MER1_type -249 75 14 * 334 305 84 36 chr3 113178492 113178659 -114345919 - MIR3 SINE MIR -11 197 23 40 0 0 36 chr3 113179141 113179180 -114345398 + AT_rich Low_complexity Low_complexity 1 39 -14 2191 78 18 3 chr3 113179180 113179464 -114345114 - AluY SINE Alu -23 288 1 40 0 0 36 chr3 113179464 113179479 -114345099 + AT_rich Low_complexity Low_complexity 39 53 0 296 294 66 33 chr3 113179485 113179696 -114344882 - L1ME LINE L1 -302 5819 5602 265 302 12 0 chr3 113180497 113180583 -114343995 - L2 LINE L2 -181 3091 3005 282 116 0 0 chr3 113180599 113180642 -114343936 + (TA)n Simple_repeat Simple_repeat 2 44 0 21 57 0 0 chr3 113180736 113180771 -114343807 + AT_rich Low_complexity Low_complexity 1 35 0 189 262 0 0 chr3 113182609 113182651 -114341927 - MIR SINE MIR -66 142 101 2519 138 98 141 chr3 113182992 113183350 -114341228 - L1MB7 LINE L1 -9 6175 5864 1896 156 0 0 chr3 113183350 113183632 -114340946 - AluSx SINE Alu -30 282 1 2519 138 98 141 chr3 113183632 113184025 -114340553 - L1MB7 LINE L1 -320 5864 5456 5809 79 7 57 chr3 113184310 113184624 -114339954 + L1PB1 LINE L1 4997 5325 -826 2758 64 0 6 chr3 113184624 113184983 -114339595 + L1PA5 LINE L1 5792 6148 -6 5809 79 7 57 chr3 113184983 113185379 -114339199 + L1PB1 LINE L1 5325 5642 -509 2236 112 0 0 chr3 113185379 113185673 -114338905 + AluSx SINE Alu 1 294 -18 5809 79 7 57 chr3 113185673 113186159 -114338419 + L1PB1 LINE L1 5642 6151 0 1795 182 124 15 chr3 113186182 113186479 -114338099 + L1ME LINE L1 4824 5087 -1079 2152 100 7 0 chr3 113186479 113186760 -114337818 + AluSg SINE Alu 17 299 -11 1795 182 124 15 chr3 113186760 113187246 -114337332 + L1ME LINE L1 5087 5678 -488 277 261 116 0 chr3 113187416 113187485 -114337093 - MIR SINE MIR -99 109 33 1146 117 117 22 chr3 113187772 113188002 -114336576 + MER21A LTR ERV1 13 264 -667 2355 158 177 6 chr3 113188007 113188482 -114336096 + MER21A LTR ERV1 376 931 0 186 313 116 61 chr3 113188551 113189008 -114335570 - L2 LINE L2 -648 2666 2185 396 212 61 20 chr3 113189227 113189326 -114335252 - MIR SINE MIR -57 151 49 1933 114 8 0 chr3 113189518 113189782 -114334796 - AluSg SINE Alu -19 291 26 365 237 59 30 chr3 113189914 113190049 -114334529 + L2 LINE L2 2173 2311 -1003 740 222 7 0 chr3 113190049 113190184 -114334394 + AluJb SINE Alu 3 138 -174 266 221 205 55 chr3 113190444 113190751 -114333827 - L1MC4 LINE L1 0 8042 7690 1379 152 9 149 chr3 113190919 113191268 -114333310 + AluJb SINE Alu 1 300 -12 380 139 63 38 chr3 113191518 113191597 -114332981 - MER63 DNA MER1_type -127 709 3 4187 148 27 18 chr3 113191910 113192615 -114331963 + MER50 LTR ERV1 1 711 -23 1474 181 19 13 chr3 113193005 113193314 -114331264 + LTR13 LTR ERVK 696 1006 -1 3958 147 14 9 chr3 113193370 113194031 -114330547 - LTR49-int LTR ERV1 -393 5938 5275 615 202 9 0 chr3 113194135 113194249 -114330329 - L1PA15-16 LINE L1 -2272 4577 4463 * 2076 233 52 56 chr3 113194247 113195010 -114329568 + L1 LINE L1 3007 3766 -2380 3337 199 21 11 chr3 113195010 113195717 -114328861 - L1PA15-16 LINE L1 -3979 2870 2157 2085 233 24 35 chr3 113196012 113196385 -114328193 - MER76 LTR ERV -3 685 318 2016 119 193 11 chr3 113196385 113196747 -114327831 + MSTA LTR MaLR 1 428 0 2085 233 24 35 chr3 113196747 113196914 -114327664 - MER76 LTR ERV -370 318 151 214 28 28 28 chr3 113197019 113197055 -114327523 + (TTCCC)n Simple_repeat Simple_repeat 2 37 0 1464 164 65 27 chr3 113197069 113197362 -114327216 - AluJo SINE Alu 0 312 9 389 219 133 0 chr3 113198101 113198206 -114326372 + L1M4 LINE L1 2295 2413 -3733 22 35 0 0 chr3 113198744 113198773 -114325805 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 113200252 113200274 -114324304 + AT_rich Low_complexity Low_complexity 1 22 0 273 162 14 27 chr3 113200503 113200577 -114324001 + L1MA7 LINE L1 6218 6290 -1 411 140 0 0 chr3 113200858 113200915 -114323663 + AluS SINE Alu 2 58 -251 478 182 11 0 chr3 113201017 113201105 -114323473 - AluJ/FRAM SINE Alu -6 306 218 2091 112 0 33 chr3 113201488 113201791 -114322787 - AluSx SINE Alu -16 296 4 206 303 112 0 chr3 113201964 113202053 -114322525 + L2 LINE L2 3174 3272 0 377 279 0 0 chr3 113202761 113202840 -114321738 - FRAM/FAM SINE Alu -90 76 1 387 56 0 0 chr3 113202843 113202897 -114321681 + (CA)n Simple_repeat Simple_repeat 2 55 0 1403 139 29 0 chr3 113202905 113203113 -114321465 - AluSg/x SINE Alu -14 296 83 587 231 29 0 chr3 113203696 113203800 -114320778 + FLAM_A SINE Alu 1 107 -35 341 321 104 27 chr3 113204122 113204343 -114320235 + L1MEd LINE L1 979 1216 -4903 300 270 259 0 chr3 113204354 113204528 -114320050 + HAL1 LINE L1 1391 1609 -898 270 237 40 0 chr3 113204936 113205012 -114319566 + L1MEd LINE L1 2385 2463 -3666 2179 115 7 0 chr3 113205021 113205326 -114319252 + AluSx SINE Alu 1 307 -5 5978 118 71 113 chr3 113205603 113205807 -114318771 + Tigger3b DNA MER2_type 1 212 -2816 2070 136 3 7 chr3 113205807 113206117 -114318461 + AluSx SINE Alu 1 309 -3 2344 82 0 7 chr3 113206119 113206412 -114318166 + AluY SINE Alu 1 291 -20 5978 118 71 113 chr3 113206412 113207488 -114317090 + Tigger3b DNA MER2_type 213 1230 -1 1443 75 75 73 chr3 113207662 113207678 -114316900 + L1PB3 LINE L1 5560 5574 -577 2163 126 7 7 chr3 113207678 113207979 -114316599 - AluSx SINE Alu -11 301 1 1443 75 75 73 chr3 113207979 113208156 -114316422 + L1PB3 LINE L1 5574 5742 -409 2352 94 3 0 chr3 113208156 113208455 -114316123 + AluSp SINE Alu 1 300 -13 1443 75 75 73 chr3 113208455 113208562 -114316016 + L1PB3 LINE L1 5742 5847 -304 443 120 133 0 chr3 113209422 113209497 -114315081 - AluSg/x SINE Alu -11 299 215 2093 138 3 0 chr3 113209569 113209865 -114314713 - AluSx SINE Alu -15 297 1 2339 89 0 13 chr3 113210150 113210464 -114314114 + AluSg SINE Alu 1 310 0 989 124 89 6 chr3 113210466 113210635 -114313943 + AluSg/x SINE Alu 127 309 0 379 338 87 60 chr3 113210803 113211069 -114313509 - L2 LINE L2 -18 3254 2982 23 0 0 0 chr3 113211077 113211100 -114313478 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 113211709 113211731 -114312847 + AT_rich Low_complexity Low_complexity 1 22 0 2329 89 0 0 chr3 113212671 113212962 -114311616 + AluSg SINE Alu 1 291 -19 2237 109 3 3 chr3 113213164 113213467 -114311111 + AluSx SINE Alu 1 303 -9 336 322 17 0 chr3 113213708 113213823 -114310755 - MIR3 SINE MIR -7 201 85 2332 82 10 0 chr3 113214064 113214357 -114310221 + AluSx SINE Alu 3 298 -14 180 0 0 0 chr3 113214797 113214817 -114309761 + (T)n Simple_repeat Simple_repeat 1 20 0 313 278 112 75 chr3 113215668 113215963 -114308615 + L1M2 LINE L1 946 1251 -5598 227 246 197 8 chr3 113218158 113218280 -114306298 + MIR SINE MIR 68 212 -50 1793 111 100 4 chr3 113218529 113218800 -114305778 - AluSq SINE Alu -16 297 1 264 291 163 43 chr3 113218800 113218941 -114305637 + MIR3 SINE MIR 46 203 -5 373 349 148 40 chr3 113219077 113219394 -114305184 + L2 LINE L2 1728 2009 -1305 1029 159 111 5 chr3 113219394 113219583 -114304995 + MER3 DNA MER1_type 1 209 0 373 349 148 40 chr3 113219583 113219853 -114304725 + L2 LINE L2 2009 2401 -913 2356 97 0 0 chr3 113219853 113220153 -114304425 - AluY SINE Alu -11 300 1 373 349 148 40 chr3 113220153 113220244 -114304334 + L2 LINE L2 2401 2481 -833 1339 217 23 16 chr3 113220459 113220763 -114303815 - MLT1A1 LTR MaLR -2 363 58 2278 112 0 0 chr3 113221065 113221360 -114303218 + AluSx SINE Alu 1 295 -17 234 226 57 0 chr3 113221408 113221461 -114303117 + L2 LINE L2 3182 3237 -76 488 181 43 0 chr3 113221484 113221578 -114303000 + MLT2B1 LTR ERVL 1 98 -422 2449 81 7 0 chr3 113221587 113221894 -114302684 - AluSq SINE Alu -4 309 1 4430 229 45 75 chr3 113221896 113224083 -114300495 - L1M1 LINE L1 -4148 2958 7 863 248 159 52 chr3 113224092 113224419 -114300159 + MLT2B1 LTR ERVL 81 442 -78 1288 101 12 0 chr3 113224424 113224593 -114299985 + AluSq SINE Alu 1 171 -142 330 26 0 0 chr3 113224604 113224615 -114299963 + (CA)n Simple_repeat Simple_repeat 1 50 0 330 26 0 0 chr3 113224615 113224654 -114299924 + (CA)n Simple_repeat Simple_repeat 2 40 0 556 101 76 0 chr3 113224668 113224747 -114299831 - AluSp/q SINE Alu -16 297 213 455 48 0 16 chr3 113224888 113224951 -114299627 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 2741 197 30 32 chr3 113224985 113225675 -114298903 + MLT1-int LTR MaLR 1 884 -487 405 237 21 0 chr3 113225734 113225827 -114298751 + MLT-int LTR MaLR 680 774 -961 2173 216 15 26 chr3 113225953 113226416 -114298162 + MLT1E1-int LTR MaLR 1270 1727 -8 1706 187 8 77 chr3 113226441 113226843 -114297735 - MLT1A2 LTR MaLR 0 467 1 2251 152 81 25 chr3 113226935 113227368 -114297210 - MSTB2 LTR MaLR 0 457 1 181 351 22 113 chr3 113227586 113227817 -114296761 + L2 LINE L2 3035 3244 -28 481 291 108 14 chr3 113228580 113228728 -114295850 + MER91A DNA MER1_type 14 175 -21 803 231 124 0 chr3 113228991 113229177 -114295401 - MLT1H1 LTR MaLR 0 555 347 * 1421 199 156 63 chr3 113229150 113229196 -114295382 + MLT1E1 LTR MaLR 96 136 -518 2305 98 3 0 chr3 113229196 113229493 -114295085 + AluSq SINE Alu 1 298 -15 1421 199 156 63 chr3 113229493 113229906 -114294672 + MLT1E1 LTR MaLR 136 652 -2 632 287 110 25 chr3 113229935 113230679 -114293899 + L1ME LINE L1 4962 5768 -396 230 263 23 105 chr3 113230676 113230847 -114293731 - L1ME3 LINE L1 -60 6102 5946 * 544 183 66 188 chr3 113230931 113231525 -114293053 - L1MC5 LINE L1 -591 7370 6612 432 0 0 0 chr3 113231531 113231579 -114292999 + (TG)n Simple_repeat Simple_repeat 1 48 0 26 64 0 0 chr3 113231596 113231643 -114292935 + AT_rich Low_complexity Low_complexity 1 47 0 1677 83 14 0 chr3 113231650 113231866 -114292712 - L1PA8 LINE L1 -3 6169 5951 367 290 25 139 chr3 113232061 113232296 -114292282 - HAL1b LINE L1 -894 454 289 2098 134 3 10 chr3 113232296 113232610 -114291968 - AluSx SINE Alu 0 312 1 367 290 25 139 chr3 113232610 113232805 -114291773 - HAL1b LINE L1 -1059 289 73 1950 114 40 34 chr3 113232991 113233289 -114291289 - AluSx SINE Alu -12 300 1 2843 224 180 2 chr3 113234240 113234426 -114290152 - L1MD2 LINE L1 -14 6345 6193 204 40 0 0 chr3 113234426 113234451 -114290127 + (TG)n Simple_repeat Simple_repeat 2 26 0 2843 224 180 2 chr3 113234451 113235099 -114289479 - L1MD2 LINE L1 -166 6193 5363 346 185 0 0 chr3 113235099 113235153 -114289425 - 5S rRNA rRNA -67 54 1 274 167 19 0 chr3 113235154 113235208 -114289370 - L1MD2 LINE L1 -988 5371 5317 204 67 0 0 chr3 113235224 113235254 -114289324 + (TTCC)n Simple_repeat Simple_repeat 1 30 0 1774 170 3 17 chr3 113235254 113235548 -114289030 - AluJb SINE Alu -22 290 1 1423 203 8 28 chr3 113235552 113235907 -114288671 - L1MD2 LINE L1 -824 5322 4975 848 198 6 12 chr3 113235913 113236075 -114288503 - AluJb SINE Alu -16 296 136 618 224 24 12 chr3 113236081 113236246 -114288332 - L1MD2 LINE L1 -1195 4951 4785 955 153 12 6 chr3 113236246 113236409 -114288169 - MLT2D LTR ERVL -249 165 2 539 268 117 50 chr3 113236419 113236712 -114287866 - L1ME4a LINE L1 -251 5870 5561 2022 99 0 0 chr3 113237114 113237377 -114287201 - AluY SINE Alu -11 300 38 182 378 69 37 chr3 113237423 113237611 -114286967 - L3b LINE CR1 0 1583 1390 243 0 0 0 chr3 113237735 113237762 -114286816 + (T)n Simple_repeat Simple_repeat 1 27 0 934 141 0 0 chr3 113238311 113238446 -114286132 + FLAM_C SINE Alu 5 139 -4 2397 194 38 38 chr3 113239174 113239731 -114284847 - MER68 LTR ERV1 -1 561 5 8168 213 102 40 chr3 113239739 113242493 -114282085 - HERVL68 LTR ERVL -16 3021 13 460 293 18 65 chr3 113242316 113242545 -114282033 - MER68-int LTR ERV1 -3961 230 13 * 1045 183 59 27 chr3 113242558 113242777 -114281801 - MER68 LTR ERV1 -21 541 316 365 333 49 57 chr3 113243002 113243188 -114281390 + MIR SINE MIR 8 193 -69 2258 120 0 0 chr3 113243188 113243489 -114281089 + AluSg SINE Alu 6 306 -4 365 333 49 57 chr3 113243489 113243548 -114281030 + MIR SINE MIR 193 251 -11 1202 227 66 51 chr3 113243572 113244044 -114280534 + L1ME3 LINE L1 5669 6147 -15 259 293 61 75 chr3 113246654 113246866 -114277712 - L2 LINE L2 -2118 1196 988 416 95 0 0 chr3 113247227 113247290 -114277288 - L1PA13 LINE L1 -244 5919 5857 3023 151 37 11 chr3 113247290 113247374 -114277204 + L1P LINE L1 4488 4568 -1578 7902 61 19 1 chr3 113247374 113248326 -114276252 - LTR5 LTR ERVK 0 969 1 3023 151 37 11 chr3 113248326 113248805 -114275773 + L1P LINE L1 4568 5066 -1080 336 267 12 73 chr3 113248805 113248970 -114275608 + L1ME4a LINE L1 5895 6049 -72 221 325 80 9 chr3 113249077 113249246 -114275332 - MIR SINE MIR -14 248 28 1760 156 77 11 chr3 113249285 113249651 -114274927 - L1MB2 LINE L1 0 6171 5782 209 213 38 12 chr3 113249688 113249768 -114274810 + (TA)n Simple_repeat Simple_repeat 1 82 0 1221 214 51 19 chr3 113249785 113250118 -114274460 - L1P5 LINE L1 -380 5776 5427 2010 134 3 14 chr3 113250266 113250557 -114274021 + AluSx SINE Alu 6 293 -19 2290 253 55 29 chr3 113250558 113252180 -114272398 - L1ME LINE L1 -3691 2389 715 1240 254 118 50 chr3 113252261 113252915 -114271663 - L1ME LINE L1 -5342 728 31 249 250 65 18 chr3 113252968 113253136 -114271442 - L1M4 LINE L1 -1582 4564 4389 1780 124 0 0 chr3 113253139 113253388 -114271190 - AluSx SINE Alu -4 308 60 2283 84 0 19 chr3 113253450 113253761 -114270817 - AluY SINE Alu -6 305 1 294 293 7 73 chr3 113255161 113255311 -114269267 + MIR3 SINE MIR 37 176 -32 2237 99 0 0 chr3 113255584 113255898 -114268680 - AluSq SINE Alu 0 314 1 1357 143 19 0 chr3 113255936 113256146 -114268432 - AluJo SINE Alu -12 300 87 2936 112 51 47 chr3 113256170 113256395 -114268183 - MER41E LTR ERV1 0 512 289 2304 95 0 3 chr3 113256395 113256690 -114267888 - AluSx SINE Alu -14 298 5 2936 112 51 47 chr3 113256690 113256974 -114267604 - MER41E LTR ERV1 -223 289 1 1942 152 13 3 chr3 113257611 113257914 -114266664 - AluJo SINE Alu -6 306 1 425 229 69 57 chr3 113258476 113258651 -114265927 - L1ME3 LINE L1 -24 6138 5962 965 190 68 0 chr3 113259022 113259227 -114265351 - MER20 DNA MER1_type 0 219 1 3942 37 0 0 chr3 113259237 113259726 -114264852 - L1PA3 LINE L1 -29 6126 5638 * 6279 22 4 3 chr3 113259724 113260742 -114263836 + L1PA3 LINE L1 4601 5621 -534 190 306 149 8 chr3 113261613 113261734 -114262844 - MIR SINE MIR -93 169 32 2178 111 3 10 chr3 113262269 113262575 -114262003 - AluSx SINE Alu -4 308 5 237 238 100 25 chr3 113263057 113263137 -114261441 - MIR SINE MIR -113 149 64 501 214 0 0 chr3 113264589 113264678 -114259900 + FLAM_A SINE Alu 1 89 -53 737 239 85 0 chr3 113264737 113264925 -114259653 + MER63A DNA MER1_type 7 210 0 447 159 83 83 chr3 113264984 113265129 -114259449 - Charlie1 DNA MER1_type -2522 239 95 470 255 122 23 chr3 113265145 113265408 -114259170 - L1ME2 LINE L1 -3 6161 5873 406 148 114 75 chr3 113265527 113265675 -114258903 - L1ME2 LINE L1 -307 5859 5704 24 53 0 0 chr3 113265799 113265837 -114258741 + AT_rich Low_complexity Low_complexity 1 38 0 2210 120 7 7 chr3 113266137 113266445 -114258133 - AluSx SINE Alu -4 308 1 1055 110 0 0 chr3 113266445 113266581 -114257997 - AluSq/x SINE Alu -176 136 1 1822 114 106 0 chr3 113268824 113269088 -114255490 + AluSx SINE Alu 1 292 -20 1302 235 187 12 chr3 113269245 113269657 -114254921 + LTR40a LTR ERVL 36 519 0 1277 199 173 32 chr3 113270445 113270878 -114253700 - MLT1D LTR MaLR -9 496 3 2291 77 3 14 chr3 113271625 113271922 -114252656 - AluY SINE Alu -17 294 1 917 134 28 21 chr3 113273059 113273201 -114251377 - FAM SINE Alu -20 165 23 201 271 0 0 chr3 113274413 113274461 -114250117 + MIR SINE MIR 215 262 0 1878 159 27 3 chr3 113275436 113275731 -114248847 + AluSx SINE Alu 1 302 -10 376 336 79 31 chr3 113275893 113276122 -114248456 + MIR SINE MIR 11 250 -12 1908 152 10 3 chr3 113277070 113277372 -114247206 - AluSx SINE Alu -8 304 1 2274 113 0 0 chr3 113277997 113278298 -114246280 - AluSq SINE Alu -12 301 1 286 261 31 54 chr3 113278847 113278977 -114245601 - L1ME LINE L1 -299 5822 5696 207 159 0 58 chr3 113279145 113279214 -114245364 + (CATATA)n Simple_repeat Simple_repeat 2 66 0 2184 112 10 7 chr3 113279762 113280066 -114244512 - AluSx SINE Alu -7 305 1 703 147 33 52 chr3 113280191 113280423 -114244155 - MER1B DNA MER1_type -6 333 35 22 35 0 0 chr3 113281625 113281654 -114242924 + AT_rich Low_complexity Low_complexity 1 29 0 1811 139 36 3 chr3 113282572 113282875 -114241703 + MER7A DNA MER2_type 1 311 -35 2670 157 10 20 chr3 113283709 113284220 -114240358 - L1MB7 LINE L1 0 6184 5679 458 181 255 0 chr3 113284239 113284333 -114240245 - FLAM_C SINE Alu -25 118 1 2122 124 54 57 chr3 113284337 113284859 -114239719 - L1MB7 LINE L1 -493 5691 5175 1126 145 23 6 chr3 113284869 113285041 -114239537 - AluJb SINE Alu -8 304 130 861 196 16 0 chr3 113285073 113285267 -114239311 - L1MB7 LINE L1 -989 5157 4961 2427 75 7 0 chr3 113286470 113286777 -114237801 + AluSg SINE Alu 1 309 -1 2385 57 0 3 chr3 113287230 113287542 -114237036 + AluY SINE Alu 1 311 0 1438 198 0 15 chr3 113287843 113288111 -114236467 + AluJo SINE Alu 1 264 -48 1771 170 3 7 chr3 113288125 113288419 -114236159 - AluJb SINE Alu -19 293 1 1964 135 16 13 chr3 113288564 113288868 -114235710 + AluSx SINE Alu 1 305 -7 302 246 43 0 chr3 113288953 113289022 -114235556 - MIR SINE MIR -80 182 111 40 0 0 0 chr3 113289950 113289990 -114234588 + AT_rich Low_complexity Low_complexity 1 40 0 409 299 33 37 chr3 113291288 113291481 -114233097 + MIR SINE MIR 21 212 -50 1762 158 37 3 chr3 113291738 113292035 -114232543 + AluSx SINE Alu 1 307 -5 397 161 89 54 chr3 113292048 113292160 -114232418 - MER103 DNA DNA -21 145 30 233 319 168 0 chr3 113292374 113292487 -114232091 + L2 LINE L2 3136 3267 -5 858 216 149 0 chr3 113292566 113292747 -114231831 - MER58A DNA MER1_type -15 209 2 388 278 0 10 chr3 113293275 113293372 -114231206 + MIR3 SINE MIR 98 193 -15 1745 184 0 0 chr3 113295663 113295945 -114228633 + AluSx SINE Alu 1 282 -30 254 259 111 0 chr3 113295968 113296049 -114228529 - FLAM_C SINE Alu -17 116 27 1740 148 7 7 chr3 113296149 113296439 -114228139 - AluSx SINE Alu -22 290 1 251 148 82 0 chr3 113296852 113296913 -114227665 - L1MC4 LINE L1 0 8042 7977 2327 83 3 0 chr3 113296915 113297215 -114227363 - AluSp SINE Alu -12 301 1 2691 157 46 2 chr3 113298548 113298982 -114225596 - MLT2A2 LTR ERVL 0 453 1 5463 135 19 6 chr3 113298982 113299855 -114224723 - HERVL-A2 LTR ERVL 0 5654 4770 1689 166 3 10 chr3 113300177 113300479 -114224099 - AluSx SINE Alu -8 304 5 205 300 100 25 chr3 113300962 113301042 -114223536 - MIR SINE MIR -113 149 64 984 232 91 3 chr3 113301794 113302079 -114222499 + LTR16B LTR ERVL 1 310 -154 186 189 0 0 chr3 113302083 113302120 -114222458 + CT-rich Low_complexity Low_complexity 2 38 0 207 0 0 0 chr3 113302155 113302178 -114222400 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 193 393 0 0 chr3 113303046 113303102 -114221476 + L2 LINE L2 3201 3256 -16 208 320 0 0 chr3 113303487 113303537 -114221041 - L2 LINE L2 -19 3294 3245 1538 56 0 0 chr3 113303556 113303734 -114220844 + AluY SINE Alu 1 178 -133 692 143 0 0 chr3 113303835 113303933 -114220645 + MSTA LTR MaLR 331 428 0 272 308 91 33 chr3 113303960 113304364 -114220214 - LTR16B LTR ERVL -3 447 1 2048 128 3 3 chr3 113305005 113305302 -114219276 - AluSx SINE Alu -15 297 1 212 276 98 24 chr3 113305358 113305481 -114219097 + L2 LINE L2 3147 3278 -35 1441 185 22 66 chr3 113305905 113306224 -114218354 + AluJb SINE Alu 1 305 -7 201 195 0 24 chr3 113306911 113306952 -114217626 + MIR3 SINE MIR 133 172 -36 442 215 83 7 chr3 113307574 113307718 -114216860 - MER114 LTR ERV -492 156 2 439 169 0 0 chr3 113307760 113307825 -114216753 + AluJb SINE Alu 2 66 -246 1357 157 0 67 chr3 113307858 113307952 -114216626 + AluJb SINE Alu 53 152 -160 2193 125 0 0 chr3 113307952 113308248 -114216330 + AluSx SINE Alu 1 296 -16 1357 157 0 67 chr3 113308248 113308408 -114216170 + AluJb SINE Alu 152 290 -22 26 0 0 0 chr3 113308579 113308605 -114215973 + AT_rich Low_complexity Low_complexity 1 26 0 500 74 62 0 chr3 113308664 113308745 -114215833 - L1MA4A LINE L1 -1 6302 6217 2484 170 13 80 chr3 113308758 113309370 -114215208 - L1 LINE L1 -2365 4483 3913 626 206 34 7 chr3 113309369 113309515 -114215063 + L1 LINE L1 2736 2885 -3261 * 6715 195 133 5 chr3 113309511 113309761 -114214817 - L1 LINE L1 -5095 1754 1537 3210 164 91 54 chr3 113309761 113310462 -114214116 + LTR8A LTR ERV1 1 727 0 6715 195 133 5 chr3 113310462 113311192 -114213386 - L1 LINE L1 -5312 1537 902 2134 132 10 0 chr3 113311192 113311496 -114213082 - AluSg SINE Alu -1 309 3 6715 195 133 5 chr3 113311496 113311941 -114212637 - L1 LINE L1 -5947 902 145 4456 131 29 28 chr3 113311945 113312671 -114211907 + MER50 LTR ERV1 1 727 -7 764 141 55 8 chr3 113312671 113312799 -114211779 - L1 LINE L1 -6714 135 2 1843 128 8 4 chr3 113312891 113313149 -114211429 - AluSx SINE Alu -15 297 39 368 167 0 0 chr3 113313241 113313301 -114211277 - MER94 DNA DNA -73 61 2 2605 47 0 0 chr3 113313523 113313820 -114210758 + AluY SINE Alu 1 297 -14 306 308 47 9 chr3 113314873 113314980 -114209598 - MLT1J2 LTR MaLR -46 404 294 294 250 68 0 chr3 113314983 113315071 -114209507 - L1ME3A LINE L1 -12 6158 6065 1929 154 20 0 chr3 113315873 113316171 -114208407 + AluJo SINE Alu 1 304 -8 945 214 65 87 chr3 113416479 113416795 -114107783 - L1 LINE L1 -1497 4649 4349 629 248 0 0 chr3 113416795 113416928 -114107650 + FLAM_C SINE Alu 1 133 0 945 214 65 87 chr3 113416928 113417161 -114107417 - L1 LINE L1 -1797 4349 4112 1155 183 198 41 chr3 113417289 113417678 -114106900 - LTR7 LTR ERV1 0 450 1 2042 127 3 0 chr3 113418200 113418508 -114106070 + AluSg SINE Alu 1 309 -1 622 285 59 32 chr3 113418945 113419383 -114105195 - L1M4c LINE L1 -4647 1737 1288 2429 82 3 3 chr3 113419774 113420078 -114104500 + AluY SINE Alu 1 304 -7 968 201 36 10 chr3 113420863 113421057 -114103521 - MIR SINE MIR -62 200 2 4022 188 5 16 chr3 113423823 113424660 -114099918 - Tigger1 DNA MER2_type -1569 849 22 1286 162 7 14 chr3 113424856 113425134 -114099444 - L1P LINE L1 -1961 4185 3910 1505 219 104 16 chr3 113425326 113425818 -114098760 + L1PBa LINE L1 629 1163 -5700 3126 200 32 0 chr3 113425825 113426511 -114098067 + L1PBa LINE L1 1321 2028 -4835 836 255 128 61 chr3 113426723 113426948 -114097630 + L1MEd LINE L1 601 810 -5321 2104 123 3 3 chr3 113426948 113427248 -114097330 + AluSx SINE Alu 1 300 -12 836 255 128 61 chr3 113427248 113427888 -114096690 + L1MEd LINE L1 810 1416 -4715 1779 168 0 14 chr3 113429398 113429722 -114094856 + AluJo SINE Alu 1 320 0 3814 167 12 28 chr3 113430192 113430933 -114093645 - MER52A LTR ERV1 0 1755 1027 473 212 0 0 chr3 113430959 113431058 -114093520 - MER52A LTR ERV1 -1012 743 645 * 514 227 49 54 chr3 113431051 113431236 -114093342 - MER52A LTR ERV1 -1516 239 56 1094 267 93 48 chr3 113431740 113432533 -114092045 - L2 LINE L2 -4 3309 2493 1548 136 12 39 chr3 113432990 113433248 -114091330 + AluJb SINE Alu 55 305 -7 295 266 42 35 chr3 113433445 113433588 -114090990 + L1MC/D LINE L1 5400 5543 -2265 29 84 0 0 chr3 113433778 113433849 -114090729 + AT_rich Low_complexity Low_complexity 1 71 0 194 382 44 15 chr3 113433860 113433996 -114090582 - MIR SINE MIR -6 256 117 412 250 28 14 chr3 113434021 113434165 -114090413 + MER103 DNA DNA 1 146 -20 214 211 0 18 chr3 113434560 113434617 -114089961 + T-rich Low_complexity Low_complexity 4 59 0 26 0 0 0 chr3 113434632 113434658 -114089920 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr3 113434747 113434780 -114089798 + AT_rich Low_complexity Low_complexity 1 33 0 1860 144 0 12 chr3 113434788 113435127 -114089451 - L1MA4 LINE L1 -21 6279 5945 249 256 76 81 chr3 113436081 113436243 -114088335 - MIR3 SINE MIR -68 140 12 2421 171 13 27 chr3 113436784 113437258 -114087320 + MLT1C LTR MaLR 1 467 0 665 173 66 143 chr3 113437730 113438039 -114086539 - MLT2D LTR ERVL 0 464 133 1045 171 153 51 chr3 113438039 113438313 -114086265 + AluJo SINE Alu 1 302 0 665 173 66 143 chr3 113438313 113438336 -114086242 - MLT2D LTR ERVL -331 133 172 2301 146 44 5 chr3 113438336 113438746 -114085832 + MSTB LTR MaLR 1 426 0 665 173 66 143 chr3 113438746 113438805 -114085773 - MLT2D LTR ERVL -291 173 111 1787 153 17 7 chr3 113438805 113439099 -114085479 + AluSx SINE Alu 1 297 -15 384 261 0 0 chr3 113439328 113439416 -114085162 - MLT1J LTR MaLR -313 198 111 489 142 21 4 chr3 113439715 113439827 -114084751 - MLT2D LTR ERVL -286 111 1 2647 159 8 8 chr3 113439910 113440394 -114084184 - L1MA4 LINE L1 -5 6295 5812 4067 98 6 54 chr3 113440633 113441295 -114083283 - L1PB1 LINE L1 -8 6143 5514 988 186 0 0 chr3 113441295 113441489 -114083089 - L1PB1 LINE L1 -1198 4948 4755 * 14250 196 65 4 chr3 113441486 113442590 -114081988 - L1P5 LINE L1 -637 6952 5918 417 20 0 0 chr3 113442590 113442640 -114081938 + (TTTTA)n Simple_repeat Simple_repeat 3 52 0 14250 196 65 4 chr3 113442640 113447393 -114077185 - L1P5 LINE L1 -1671 5918 728 259 304 43 9 chr3 113447438 113447553 -114077025 - L1P5 LINE L1 -7024 557 439 936 72 0 7 chr3 113447560 113447698 -114076880 - L1MA5 LINE L1 -471 5829 5693 491 245 54 91 chr3 113447698 113447759 -114076819 + MLT1G1 LTR MaLR 137 199 -391 4785 30 0 0 chr3 113447759 113448317 -114076261 + LTR6B LTR ERV1 1 558 0 491 245 54 91 chr3 113448317 113448691 -114075887 + MLT1G1 LTR MaLR 199 589 -1 532 184 20 0 chr3 113450088 113450186 -114074392 - MER5A DNA MER1_type -1 188 89 32 67 0 0 chr3 113450254 113450314 -114074264 + AT_rich Low_complexity Low_complexity 1 60 0 1151 215 93 12 chr3 113450315 113450659 -114073919 - L1MC4 LINE L1 -1031 7011 6640 47 33 0 0 chr3 113450679 113450740 -114073838 + AT_rich Low_complexity Low_complexity 1 61 0 246 254 90 30 chr3 113450753 113450887 -114073691 - L1MC4 LINE L1 -1342 6700 6559 258 32 0 0 chr3 113451684 113451715 -114072863 + (CCTG)n Simple_repeat Simple_repeat 4 34 0 2167 92 4 0 chr3 113451715 113452133 -114072445 - AluSx SINE Alu 0 419 1 280 287 138 0 chr3 113452283 113452370 -114072208 - MIR SINE MIR -67 141 43 * 423 196 161 0 chr3 113452364 113452476 -114072102 + L2 LINE L2 3184 3313 0 453 247 26 13 chr3 113453033 113453187 -114071391 - MER103 DNA DNA -10 156 1 194 382 44 15 chr3 113453212 113453348 -114071230 + MIR SINE MIR 117 256 -6 29 84 0 0 chr3 113453359 113453430 -114071148 + AT_rich Low_complexity Low_complexity 1 71 0 1998 153 3 19 chr3 113453910 113454277 -114070301 + MER47A DNA MER2_type 6 366 0 1990 178 26 8 chr3 113454644 113455027 -114069551 - MLT1B LTR MaLR 0 390 1 256 206 16 16 chr3 113456180 113456243 -114068335 + (CA)n Simple_repeat Simple_repeat 2 64 0 184 281 11 101 chr3 113456393 113456482 -114068096 - L2 LINE L2 -6 3266 3186 854 67 0 8 chr3 113457100 113457219 -114067359 + (TTCC)n Simple_repeat Simple_repeat 3 120 0 219 69 0 0 chr3 113457711 113457740 -114066838 + (CACTC)n Simple_repeat Simple_repeat 1 29 0 2243 105 3 0 chr3 113458753 113459049 -114065529 - AluSx SINE Alu -15 297 1 644 285 95 45 chr3 113459738 113459959 -114064619 + MIR SINE MIR 30 261 -1 297 273 187 14 chr3 113460960 113461099 -114063479 + MIR3 SINE MIR 15 177 -31 199 260 110 27 chr3 113461362 113461435 -114063143 - L2 LINE L2 -7 3265 3187 1057 287 141 70 chr3 113461676 113462391 -114062187 + L1MEd LINE L1 253 1136 -1354 1612 166 10 36 chr3 113462391 113462699 -114061879 + AluJo SINE Alu 2 301 -11 1057 287 141 70 chr3 113462699 113463033 -114061545 + L1MEd LINE L1 1136 1445 -1045 9541 39 1 1 chr3 113463080 113465016 -114059562 - L1PA4 LINE L1 -1 6154 4214 11438 30 0 0 chr3 113465016 113466465 -114058113 + L1PA4 LINE L1 2737 4185 -1961 352 350 68 11 chr3 113466481 113466658 -114057920 + HAL1 LINE L1 1573 1759 -748 6738 135 10 12 chr3 113466661 113467786 -114056792 + Tigger1 DNA MER2_type 22 1143 -1275 1400 171 61 0 chr3 113467787 113468033 -114056545 - MER1B DNA MER1_type -78 261 1 885 207 11 35 chr3 113468037 113468298 -114056280 - L1M4 LINE L1 -1108 5038 4784 * 3821 220 80 46 chr3 113468286 113468605 -114055973 - L1ME LINE L1 -690 5708 5401 1797 141 42 45 chr3 113468605 113468917 -114055661 - AluSx SINE Alu -1 311 1 3821 220 80 46 chr3 113468917 113469397 -114055181 - L1ME LINE L1 -997 5401 4939 12977 107 21 2 chr3 113469397 113472157 -114052421 - L1PA8 LINE L1 -9 6163 3356 3821 220 80 46 chr3 113472157 113472357 -114052221 - L1ME LINE L1 -1459 4939 4747 2246 110 7 0 chr3 113472357 113472649 -114051929 + AluSg SINE Alu 1 294 -16 3821 220 80 46 chr3 113472649 113473531 -114051047 - L1ME LINE L1 -1651 4747 3760 725 267 26 30 chr3 113473542 113473863 -114050715 - L1ME LINE L1 -4907 1477 1181 477 271 7 26 chr3 113474058 113474213 -114050365 - L1ME LINE L1 -5918 454 303 2011 127 38 0 chr3 113474220 113474511 -114050067 - AluSx SINE Alu -10 302 1 329 62 21 0 chr3 113475123 113475171 -114049407 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 22 35 0 0 chr3 113476501 113476530 -114048048 + AT_rich Low_complexity Low_complexity 1 29 0 312 73 0 0 chr3 113477702 113477743 -114046835 - MSTB LTR MaLR 0 426 386 205 29 59 0 chr3 113477849 113477883 -114046695 + (CTATA)n Simple_repeat Simple_repeat 5 40 0 45 50 0 30 chr3 113478999 113479098 -114045480 + AT_rich Low_complexity Low_complexity 1 96 0 1857 139 13 26 chr3 113479372 113479675 -114044903 - AluSq SINE Alu -14 299 1 256 291 164 0 chr3 113480074 113480184 -114044394 - MIR SINE MIR -6 256 129 533 291 45 35 chr3 113480192 113480391 -114044187 - MIR SINE MIR 0 262 62 360 278 196 26 chr3 113480521 113480739 -114043839 + MIR SINE MIR 11 259 -3 339 25 0 0 chr3 113480847 113480887 -114043691 + (CA)n Simple_repeat Simple_repeat 2 41 0 810 241 155 4 chr3 113480997 113481275 -114043303 - MER5C DNA MER1_type 0 324 5 28 0 0 0 chr3 113481689 113481717 -114042861 + AT_rich Low_complexity Low_complexity 1 28 0 970 169 0 48 chr3 113481909 113482075 -114042503 - AluSg/x SINE Alu -20 292 135 185 91 0 30 chr3 113483077 113483110 -114041468 + (ATG)n Simple_repeat Simple_repeat 2 33 0 2205 190 146 66 chr3 113483701 113484385 -114040193 - LTR28 LTR ERV1 -14 1006 119 253 245 71 49 chr3 113484396 113484538 -114040040 - MER61B LTR ERV1 -286 139 11 378 61 0 0 chr3 113484857 113484906 -114039672 + (TG)n Simple_repeat Simple_repeat 2 50 0 323 271 64 36 chr3 113485042 113485182 -114039396 - L1ME LINE L1 -346 5775 5632 2136 143 0 0 chr3 113486360 113486660 -114037918 - AluSx SINE Alu -12 300 1 3279 115 27 56 chr3 113486937 113487526 -114037052 - LTR24B LTR ERV1 -2 574 3 226 222 32 0 chr3 113487604 113487667 -114036911 - MER67C LTR ERV1 -645 65 1 1093 185 50 63 chr3 113490431 113490669 -114033909 - AluJb SINE Alu -77 235 1 2401 88 3 0 chr3 113492716 113493024 -114031554 + AluSg SINE Alu 1 309 -1 23 86 0 0 chr3 113494267 113494325 -114030253 + AT_rich Low_complexity Low_complexity 1 58 0 270 188 78 16 chr3 113495019 113495083 -114029495 + Tigger2 DNA MER2_type 2 69 -2649 599 279 17 17 chr3 113495124 113495296 -114029282 - MER8 DNA MER2_type -67 172 1 204 238 0 0 chr3 113495759 113495801 -114028777 - MIR SINE MIR -63 145 104 25 31 0 0 chr3 113495995 113496027 -114028551 + AT_rich Low_complexity Low_complexity 1 32 0 1105 252 74 16 chr3 113496304 113496736 -114027842 - L1MC4a LINE L1 -299 7509 7053 425 182 182 7 chr3 113496764 113496907 -114027671 - L1MC4 LINE L1 -1057 6985 6818 264 257 115 49 chr3 113496961 113497144 -114027434 - L2 LINE L2 -3 3310 3116 779 165 0 0 chr3 113497405 113497526 -114027052 + FLAM_C SINE Alu 3 123 -20 431 158 13 0 chr3 113497654 113497730 -114026848 + Tigger5 DNA MER2_type 1 77 -2246 420 181 0 0 chr3 113497730 113497802 -114026776 - Tigger5 DNA MER2_type -2 2321 2250 310 219 0 0 chr3 113497801 113497865 -114026713 + Tigger5 DNA MER2_type 2259 2322 -1 * 320 99 56 0 chr3 113498572 113498643 -114025935 + (CA)n Simple_repeat Simple_repeat 2 76 0 346 209 188 32 chr3 113499419 113499594 -114024984 - MLT1H1 LTR MaLR -24 531 329 1636 195 36 9 chr3 113499715 113500049 -114024529 - MER61A LTR ERV1 0 343 1 861 184 179 8 chr3 113500054 113500288 -114024290 + ORSL DNA AcHobo 2 275 0 310 200 27 13 chr3 113500344 113500419 -114024159 - MLT1F LTR MaLR -465 77 2 25 31 0 0 chr3 113500641 113500673 -114023905 + AT_rich Low_complexity Low_complexity 1 32 0 226 307 67 67 chr3 113501070 113501220 -114023358 - L2 LINE L2 -6 3266 3117 241 269 30 90 chr3 113502143 113502277 -114022301 + MIR SINE MIR 113 238 -24 1343 220 200 74 chr3 113503872 113504152 -114020426 + L2 LINE L2 2283 2526 -787 336 23 0 0 chr3 113504152 113504195 -114020383 + MADE1 DNA Mariner 1 43 -37 1343 220 200 74 chr3 113504195 113504795 -114019783 + L2 LINE L2 2526 3313 0 223 22 0 109 chr3 113504880 113504926 -114019652 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 2411 59 0 26 chr3 113504994 113505299 -114019279 + AluY SINE Alu 1 297 -14 269 186 17 17 chr3 113505866 113505925 -114018653 - MER2 DNA MER2_type 0 345 287 1648 182 19 19 chr3 113506131 113506439 -114018139 - AluJb SINE Alu -4 308 1 325 224 9 52 chr3 113506445 113506505 -114018073 + Charlie8 DNA MER1_type 82 136 -205 2369 93 3 0 chr3 113506505 113506805 -114017773 + AluSp SINE Alu 1 301 -12 325 224 9 52 chr3 113506805 113506860 -114017718 + Charlie8 DNA MER1_type 136 192 -149 280 221 29 15 chr3 113511756 113511824 -114012754 - MLT1H LTR MaLR -17 550 470 1192 88 6 41 chr3 113511890 113511976 -114012602 - AluSg/x SINE Alu -15 294 215 8264 51 12 0 chr3 113511976 113512933 -114011645 - LTR5 LTR ERVK 0 969 1 1192 88 6 41 chr3 113512933 113513016 -114011562 - AluSg/x SINE Alu -94 215 131 4729 79 6 0 chr3 113513016 113513646 -114010932 - L1PA7 LINE L1 0 6154 5521 2421 147 19 21 chr3 113513646 113514074 -114010504 - L1P3 LINE L1 -6025 436 10 484 266 72 58 chr3 113514137 113514344 -114010234 - MLT1H LTR MaLR -226 323 114 2191 40 8 145 chr3 113515040 113515392 -114009186 + AluY SINE Alu 1 304 -7 4342 95 25 31 chr3 113515396 113515582 -114008996 - L1MA3 LINE L1 -12 6293 6107 2241 104 0 10 chr3 113515582 113515880 -114008698 + AluSx SINE Alu 1 295 -17 4342 95 25 31 chr3 113515880 113516398 -114008180 - L1MA3 LINE L1 -198 6107 5593 * 17257 84 3 15 chr3 113516393 113519286 -114005292 - L1PA7 LINE L1 -2 6152 3283 2211 110 17 0 chr3 113519286 113519585 -114004993 - AluSg SINE Alu -6 304 1 17257 84 3 15 chr3 113519585 113519956 -114004622 - L1PA7 LINE L1 -2871 3283 2909 14314 154 39 8 chr3 113519976 113520408 -114004170 - L1 LINE L1 -1351 6214 5797 2325 101 0 0 chr3 113520408 113520704 -114003874 - AluY SINE Alu -15 296 1 14314 154 39 8 chr3 113520704 113521378 -114003200 - L1 LINE L1 -1768 5797 5145 207 0 0 0 chr3 113521378 113521401 -114003177 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 14314 154 39 8 chr3 113521401 113524263 -114000315 - L1 LINE L1 -2420 5145 2373 198 0 0 0 chr3 113524263 113524285 -114000293 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 14314 154 39 8 chr3 113524285 113524632 -113999946 - L1 LINE L1 -5192 2373 2038 183 42 0 0 chr3 113524632 113524656 -113999922 + (TC)n Simple_repeat Simple_repeat 2 25 0 14314 154 39 8 chr3 113524656 113525297 -113999281 - L1 LINE L1 -5527 2038 1099 402 165 175 0 chr3 113525294 113525397 -113999181 - L1 LINE L1 -7432 133 13 * 1797 250 84 15 chr3 113525696 113526751 -113997827 - L1MEc LINE L1 -3373 2842 1760 2319 118 0 0 chr3 113527127 113527432 -113997146 - AluSx SINE Alu -2 310 6 281 143 0 52 chr3 113527849 113527926 -113996652 + MER52A LTR ERV1 1 73 -1682 580 212 49 49 chr3 113528566 113528750 -113995828 + MER52A LTR ERV1 56 239 -1516 546 141 0 0 chr3 113528743 113528842 -113995736 + MER52A LTR ERV1 645 743 -1012 * 4073 153 12 28 chr3 113528868 113529609 -113994969 + MER52A LTR ERV1 1027 1755 0 330 326 62 43 chr3 113529686 113530054 -113994524 - L1M4 LINE L1 -3568 2578 2204 1778 168 0 14 chr3 113530079 113530403 -113994175 - AluJo SINE Alu 0 320 1 310 303 48 97 chr3 113530645 113531101 -113993477 - HAL1b LINE L1 -419 929 496 26455 37 3 1 chr3 113531214 113537348 -113987230 - L1PA4 LINE L1 -3 6152 3 406 197 124 18 chr3 113537370 113537534 -113987044 - L1MD3 LINE L1 0 7995 6178 196 315 0 0 chr3 113537696 113537750 -113986828 + L2 LINE L2 3176 3229 -84 290 334 44 9 chr3 113538421 113538531 -113986047 + MIR SINE MIR 3 118 -90 465 298 29 14 chr3 113538601 113538768 -113985810 + MER5A DNA MER1_type 2 183 -6 605 226 80 10 chr3 113539492 113539691 -113984887 - L1MD3 LINE L1 0 7995 7783 570 314 21 5 chr3 113539784 113539972 -113984606 + MIR SINE MIR 2 192 -70 358 359 70 0 chr3 113540206 113540362 -113984216 - MIR3 SINE MIR 0 208 42 236 230 27 0 chr3 113542315 113542389 -113982189 - MLT1K LTR MaLR -28 560 485 420 296 15 0 chr3 113542399 113542531 -113982047 - MER94 DNA DNA 0 134 1 2866 172 78 63 chr3 113542554 113543328 -113981250 + LTR1 LTR ERV1 1 785 0 238 358 78 11 chr3 113543356 113543535 -113981043 - MLT1K LTR MaLR -158 430 240 244 296 69 57 chr3 113543551 113543798 -113980780 - LTR33A LTR ERVL -20 503 254 4391 149 27 6 chr3 113545021 113545510 -113979068 + L1MA9 LINE L1 5299 5813 -499 531 0 0 0 chr3 113545510 113545569 -113979009 + (CA)n Simple_repeat Simple_repeat 1 59 0 4391 149 27 6 chr3 113545569 113545899 -113978679 + L1MA9 LINE L1 5813 6135 -177 337 356 40 7 chr3 113546082 113546231 -113978347 - L1ME LINE L1 -326 5795 5642 21 36 0 0 chr3 113546901 113546929 -113977649 + AT_rich Low_complexity Low_complexity 1 28 0 2174 116 0 0 chr3 113547545 113547855 -113976723 - AluSg SINE Alu 0 310 1 180 77 0 0 chr3 113547855 113547881 -113976697 + (T)n Simple_repeat Simple_repeat 1 26 0 2394 188 33 48 chr3 113547984 113548499 -113976079 - L1ME2 LINE L1 -9 6155 5650 739 136 64 24 chr3 113548499 113548624 -113975954 + FLAM_C SINE Alu 1 130 -3 2394 188 33 48 chr3 113548624 113548751 -113975827 - L1ME2 LINE L1 -514 5650 5523 281 279 51 76 chr3 113549155 113549313 -113975265 + MIR3 SINE MIR 49 202 -6 3002 182 33 0 chr3 113549635 113550179 -113974399 - MER68 LTR ERV1 0 562 1 289 264 42 42 chr3 113550390 113550534 -113974044 - L1ME2 LINE L1 -2265 5543 5400 1926 136 6 40 chr3 113550723 113551046 -113973532 - AluJb SINE Alu 0 312 1 1169 137 0 0 chr3 113551050 113551218 -113973360 - AluSg/x SINE Alu -13 299 132 2119 113 54 59 chr3 113551301 113551691 -113972887 - MLT1B LTR MaLR 0 390 3 2750 85 56 5 chr3 113553903 113554313 -113970265 + MER57B LTR ERV1 1 431 -3 1668 136 106 12 chr3 113554385 113554716 -113969862 + MER31A LTR ERV1 1 362 -123 205 231 115 51 chr3 113554882 113554960 -113969618 + L2 LINE L2 3231 3313 0 198 129 0 57 chr3 113555701 113555771 -113968807 + (GGGA)n Simple_repeat Simple_repeat 2 67 0 285 325 121 13 chr3 113556123 113556280 -113968298 - MIR SINE MIR -18 244 71 2257 84 0 7 chr3 113556959 113557256 -113967322 - AluSg SINE Alu -15 295 1 189 143 0 57 chr3 113557487 113557522 -113967056 - L2 LINE L2 -35 3278 3246 195 216 0 0 chr3 113557709 113557746 -113966832 + L2 LINE L2 3269 3305 -8 330 286 97 89 chr3 113557794 113558165 -113966413 + L3 LINE CR1 910 1283 -294 649 256 182 16 chr3 113558468 113558726 -113965852 - L2 LINE L2 -16 3297 2997 1468 262 158 13 chr3 113558761 113559288 -113965290 - L2 LINE L2 -429 2885 2283 21 0 0 0 chr3 113559758 113559779 -113964799 + AT_rich Low_complexity Low_complexity 1 21 0 752 196 51 0 chr3 113559779 113559917 -113964661 - FRAM SINE Alu -31 145 1 2197 98 7 7 chr3 113560074 113560369 -113964209 + AluSx SINE Alu 1 295 -17 417 214 100 7 chr3 113560551 113560691 -113963887 + MER103 DNA DNA 3 155 -11 662 302 38 0 chr3 113561081 113561316 -113963262 - MLT1J1 LTR MaLR -140 306 63 614 236 111 0 chr3 113561583 113561727 -113962851 - FRAM SINE Alu -16 160 1 5871 150 103 11 chr3 113561793 113563759 -113960819 - L1MA5A LINE L1 -1 6296 4127 1792 164 6 13 chr3 113563770 113564082 -113960496 - AluJo SINE Alu -2 310 1 226 282 115 0 chr3 113564265 113564343 -113960235 - MER58 DNA MER1_type -2332 88 2 2341 111 3 0 chr3 113564405 113564711 -113959867 - AluSx SINE Alu -5 307 1 22 70 0 0 chr3 113565781 113565824 -113958754 + AT_rich Low_complexity Low_complexity 1 43 0 666 163 152 44 chr3 113566293 113566553 -113958025 - MER1B DNA MER1_type 0 339 1 25 0 0 0 chr3 113566783 113566808 -113957770 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 113566937 113566958 -113957620 + AT_rich Low_complexity Low_complexity 1 21 0 374 246 86 27 chr3 113567004 113567191 -113957387 + L1MEd LINE L1 16 213 -5906 1062 270 146 46 chr3 113567383 113567722 -113956856 + L1MEd LINE L1 454 758 -5371 2104 123 3 3 chr3 113567722 113568022 -113956556 + AluSx SINE Alu 1 300 -12 1062 270 146 46 chr3 113568022 113568738 -113955840 + L1MEd LINE L1 758 1614 -4515 422 308 169 23 chr3 113569267 113569615 -113954963 + L1MEd LINE L1 2121 2519 -3610 535 314 226 6 chr3 113569836 113570362 -113954216 + L1MEd LINE L1 2825 3466 -2663 452 285 125 10 chr3 113570371 113570764 -113953814 + L1MEd LINE L1 3529 3966 -2163 2192 95 0 10 chr3 113570764 113571059 -113953519 - AluY SINE Alu -19 292 1 2048 99 7 56 chr3 113571350 113571653 -113952925 + AluSg SINE Alu 1 288 -22 1973 191 30 83 chr3 113571780 113572347 -113952231 - MLT2B3 LTR ERVL -10 544 8 2472 172 39 72 chr3 113572505 113573116 -113951462 - MER90 LTR ERV1 -16 598 8 1623 183 10 20 chr3 113573685 113573986 -113950592 - AluJb SINE Alu -14 298 1 48 32 0 0 chr3 113574162 113574224 -113950354 + AT_rich Low_complexity Low_complexity 1 62 0 251 366 120 7 chr3 113574857 113574999 -113949579 - MER5A DNA MER1_type -5 184 27 407 224 73 36 chr3 113577330 113577451 -113947127 - L1MC5 LINE L1 -46 7915 7783 1574 165 68 0 chr3 113577451 113577700 -113946878 - AluSx SINE Alu -46 266 1 407 224 73 36 chr3 113577700 113577770 -113946808 - L1MC5 LINE L1 -178 7783 7717 656 253 0 35 chr3 113578592 113578790 -113945788 - L1ME3 LINE L1 0 6162 5972 847 253 114 50 chr3 113579024 113579610 -113944968 - L1ME LINE L1 -4946 1032 409 2211 114 64 52 chr3 113579639 113580077 -113944501 - MER65A LTR ERV1 -2 443 1 254 252 0 58 chr3 113580214 113580317 -113944261 - L1ME LINE L1 -5659 411 315 251 259 122 8 chr3 113580416 113580547 -113944031 - L1ME LINE L1 -5924 146 1 213 306 69 0 chr3 113581119 113581191 -113943387 - L2 LINE L2 -38 3275 3199 1013 198 58 10 chr3 113581282 113581489 -113943089 - MIR SINE MIR -44 218 2 22 80 0 0 chr3 113581857 113581907 -113942671 + AT_rich Low_complexity Low_complexity 1 50 0 195 296 19 83 chr3 113583104 113583212 -113941366 + MIR3 SINE MIR 87 187 -21 1776 145 9 72 chr3 113583618 113583950 -113940628 + AluJb SINE Alu 1 311 -1 578 172 203 76 chr3 113584626 113584917 -113939661 - MER33 DNA MER1_type 0 324 1 360 285 63 48 chr3 113585492 113585699 -113938879 - L1MC5 LINE L1 -79 7882 7673 441 169 0 34 chr3 113585710 113585799 -113938779 - AluJb SINE Alu -14 298 213 954 210 57 14 chr3 113586015 113586421 -113938157 - MLT1F LTR MaLR -8 559 48 406 296 126 26 chr3 113586596 113586710 -113937868 - L1MC4a LINE L1 -1744 6064 5963 5924 138 81 11 chr3 113586710 113587858 -113936720 + Tigger3b DNA MER2_type 2 1229 -2 406 296 126 26 chr3 113587858 113587973 -113936605 - L1MC4a LINE L1 -1845 5963 5812 3240 170 50 14 chr3 113588062 113588644 -113935934 - MER6A DNA MER2_type -2 603 1 221 289 30 118 chr3 113588921 113589056 -113935522 + MIR SINE MIR 1 123 -139 27 29 0 0 chr3 113590919 113590953 -113933625 + AT_rich Low_complexity Low_complexity 1 34 0 1180 171 42 5 chr3 113591600 113591816 -113932762 + MER58A DNA MER1_type 1 224 0 261 273 107 50 chr3 113592077 113592198 -113932380 - MER5B DNA MER1_type -4 174 47 * 268 284 25 12 chr3 113592187 113592268 -113932310 - MIR SINE MIR -65 143 62 413 297 224 0 chr3 113597698 113597917 -113926661 + L2 LINE L2 2690 2957 -357 1519 155 57 26 chr3 113599156 113599420 -113925158 - AluJo SINE Alu -17 295 24 233 317 114 14 chr3 113600980 113601148 -113923430 + MER5B DNA MER1_type 7 177 -1 292 314 86 7 chr3 113601908 113602048 -113922530 - MIR SINE MIR 0 262 112 1223 107 0 0 chr3 113602092 113602251 -113922327 + AluSp SINE Alu 1 159 -154 1542 239 110 19 chr3 113602898 113603564 -113921014 + HAL1 LINE L1 1089 1814 -693 468 181 123 157 chr3 113603994 113604244 -113920334 + MIR SINE MIR 17 236 -26 223 284 54 0 chr3 113606455 113606529 -113918049 - MIR3 SINE MIR -2 206 129 1465 147 54 0 chr3 113606732 113606990 -113917588 - L1PA13 LINE L1 -1 6162 5891 2243 118 0 6 chr3 113609028 113609341 -113915237 + AluSq SINE Alu 1 311 -2 304 328 80 77 chr3 113609863 113610238 -113914340 + L2 LINE L2 2813 3188 -84 1252 129 110 5 chr3 113612881 113613090 -113911488 - AluJb SINE Alu -81 231 1 226 324 88 15 chr3 113613517 113613653 -113910925 + MIR SINE MIR 117 262 0 2522 56 0 7 chr3 113613933 113614239 -113910339 - AluY SINE Alu -7 304 1 3120 265 80 13 chr3 113617065 113618644 -113905934 + L1ME1 LINE L1 560 2288 -4108 2079 129 7 7 chr3 113618648 113618958 -113905620 + AluSx SINE Alu 1 310 -2 2771 209 82 31 chr3 113619034 113619931 -113904647 + L1ME1 LINE L1 5260 6192 -43 254 185 62 62 chr3 113620006 113620087 -113904491 + MLT1H LTR MaLR 94 174 -375 307 221 43 121 chr3 113620266 113620406 -113904172 + MLT1H LTR MaLR 421 549 0 21 36 0 0 chr3 113620903 113620931 -113903647 + AT_rich Low_complexity Low_complexity 1 28 0 195 213 67 67 chr3 113621251 113621326 -113903252 - L2 LINE L2 -1 3312 3238 387 326 35 7 chr3 113623261 113623405 -113901173 - L2 LINE L2 -1 3312 3165 21 0 0 0 chr3 113624300 113624321 -113900257 + AT_rich Low_complexity Low_complexity 1 21 0 364 172 0 16 chr3 113624478 113624542 -113900036 - MER2 DNA MER2_type 0 345 283 948 183 53 0 chr3 113624604 113624773 -113899805 - MER2 DNA MER2_type -167 178 1 503 331 17 29 chr3 113625078 113625250 -113899328 + MER91A DNA MER1_type 1 170 -26 252 0 0 0 chr3 113625457 113625485 -113899093 + (TC)n Simple_repeat Simple_repeat 2 29 0 22 56 0 0 chr3 113626783 113626819 -113897759 + AT_rich Low_complexity Low_complexity 1 36 0 195 329 13 0 chr3 113627016 113627095 -113897483 - MIR SINE MIR 0 262 183 581 253 81 25 chr3 113627642 113627840 -113896738 - MIR SINE MIR -42 220 12 261 224 0 0 chr3 113629279 113629328 -113895250 + L2 LINE L2 3219 3267 -5 474 257 71 0 chr3 113629397 113629510 -113895068 + MER58B DNA MER1_type 219 339 -2 843 194 0 81 chr3 113629512 113629723 -113894855 - MER58A DNA MER1_type -29 195 2 4445 127 5 37 chr3 113630152 113630914 -113893664 + L1PB3 LINE L1 5415 6152 -2 22 0 0 0 chr3 113630914 113630936 -113893642 + AT_rich Low_complexity Low_complexity 1 22 0 945 217 19 79 chr3 113631399 113631565 -113893013 - L1 LINE L1 -1962 4184 4009 271 132 0 0 chr3 113631565 113631603 -113892975 - tRNA-Ser-TCC tRNA tRNA -47 38 1 945 217 19 79 chr3 113631603 113631853 -113892725 - L1 LINE L1 -2137 4009 3793 247 175 0 0 chr3 113631865 113631905 -113892673 + LTR16A LTR ERVL 1 40 -410 27 29 0 0 chr3 113632841 113632875 -113891703 + AT_rich Low_complexity Low_complexity 1 34 0 222 171 0 0 chr3 113635689 113635730 -113888848 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 395 248 255 0 chr3 113637164 113637325 -113887253 + MER46C DNA MER2_type 1 202 -136 * 435 123 0 62 chr3 113637303 113637384 -113887194 + Charlie1 DNA MER1_type 2429 2504 -257 254 221 0 58 chr3 113638132 113638218 -113886360 + GA-rich Low_complexity Low_complexity 1 81 0 590 283 30 0 chr3 113640067 113640233 -113884345 + MIR SINE MIR 3 173 -89 194 328 101 25 chr3 113640305 113640424 -113884154 + L2 LINE L2 3180 3307 -6 23 0 0 0 chr3 113643417 113643440 -113881138 + AT_rich Low_complexity Low_complexity 1 23 0 35 41 0 0 chr3 113644397 113644446 -113880132 + AT_rich Low_complexity Low_complexity 1 49 0 380 263 82 17 chr3 113645149 113645404 -113879174 + MER46C DNA MER2_type 25 338 0 346 365 114 33 chr3 113645615 113646161 -113878417 + L2 LINE L2 2150 2739 -575 2106 81 0 21 chr3 113646349 113646633 -113877945 - AluY SINE Alu -33 278 1 250 276 138 43 chr3 113646849 113646965 -113877613 + L2 LINE L2 3138 3264 -8 1194 132 11 0 chr3 113647136 113647310 -113877268 + FRAM SINE Alu 1 176 0 337 250 11 22 chr3 113649317 113649409 -113875169 - L1MC5 LINE L1 -51 7910 7820 332 346 38 0 chr3 113651405 113651538 -113873040 - MIR SINE MIR -74 188 51 24 32 0 0 chr3 113653194 113653225 -113871353 + AT_rich Low_complexity Low_complexity 1 31 0 272 191 16 16 chr3 113655095 113655158 -113869420 + (CA)n Simple_repeat Simple_repeat 2 64 0 839 61 0 9 chr3 113656015 113656130 -113868448 + (TTCC)n Simple_repeat Simple_repeat 3 116 0 219 69 0 0 chr3 113656622 113656651 -113867927 + (CACTC)n Simple_repeat Simple_repeat 1 29 0 2193 108 3 0 chr3 113657664 113657960 -113866618 - AluSx SINE Alu -15 297 1 648 285 95 45 chr3 113658649 113658870 -113865708 + MIR SINE MIR 30 261 -1 291 273 187 14 chr3 113659871 113660010 -113864568 + MIR3 SINE MIR 15 177 -31 196 260 110 27 chr3 113660273 113660346 -113864232 - L2 LINE L2 -7 3265 3187 237 293 96 88 chr3 113660602 113661302 -113863276 + L1MEd LINE L1 268 980 -5139 1582 169 10 36 chr3 113661302 113661610 -113862968 + AluJo SINE Alu 2 301 -11 237 293 96 88 chr3 113661610 113661857 -113862721 + L1MEd LINE L1 980 1223 -4896 17659 79 3 14 chr3 113661991 113664888 -113859690 - L1PA4 LINE L1 -1 6154 3283 2178 113 17 0 chr3 113664888 113665188 -113859390 - AluSg SINE Alu -5 305 1 17659 79 3 14 chr3 113665188 113665559 -113859019 - L1PA4 LINE L1 -2872 3283 2909 12860 153 36 10 chr3 113665579 113666011 -113858567 - L1 LINE L1 -1351 6214 5794 2285 104 0 0 chr3 113666011 113666308 -113858270 - AluY SINE Alu -14 297 1 12860 153 36 10 chr3 113666308 113666982 -113857596 - L1 LINE L1 -1771 5794 5138 207 0 0 0 chr3 113666982 113667005 -113857573 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 12860 153 36 10 chr3 113667005 113669886 -113854692 - L1 LINE L1 -2427 5138 2123 2356 94 7 0 chr3 113670495 113670802 -113853776 + AluSg SINE Alu 1 309 -1 2388 83 0 3 chr3 113672425 113672725 -113851853 - AluSg1 SINE Alu -9 300 2 1486 194 94 3 chr3 113676837 113677157 -113847421 + MLT1B LTR MaLR 28 376 -14 657 219 14 7 chr3 113679934 113680080 -113844498 + MER58C DNA MER1_type 69 215 0 630 71 0 0 chr3 113680909 113680993 -113843585 + (TA)n Simple_repeat Simple_repeat 1 84 0 681 214 14 7 chr3 113681898 113682043 -113842535 + MLT1E LTR MaLR 1 146 -447 234 239 0 0 chr3 113682090 113682136 -113842442 + GA-rich Low_complexity Low_complexity 6 51 0 895 214 0 22 chr3 113684828 113685006 -113839572 - AluJo SINE Alu -39 273 100 2056 128 6 10 chr3 113688302 113688615 -113835963 + AluSx SINE Alu 1 312 0 23 33 0 0 chr3 113690727 113690757 -113833821 + AT_rich Low_complexity Low_complexity 1 30 0 186 43 0 0 chr3 113690943 113690966 -113833612 + (CGGGGG)n Simple_repeat Simple_repeat 4 26 0 297 0 0 0 chr3 113692025 113692058 -113832520 + (T)n Simple_repeat Simple_repeat 1 33 0 2158 121 0 19 chr3 113692437 113692752 -113831826 + AluSq SINE Alu 1 309 -4 195 114 0 0 chr3 113694232 113694267 -113830311 + (TG)n Simple_repeat Simple_repeat 1 35 0 384 190 26 0 chr3 113694307 113694350 -113830228 + GA-rich Low_complexity Low_complexity 1 41 -78 216 0 0 0 chr3 113694350 113694374 -113830204 + (TG)n Simple_repeat Simple_repeat 1 24 0 384 190 26 0 chr3 113694374 113694446 -113830132 + GA-rich Low_complexity Low_complexity 41 119 0 24 0 0 0 chr3 113695454 113695478 -113829100 + AT_rich Low_complexity Low_complexity 1 24 0 764 54 0 0 chr3 113697690 113697783 -113826795 - L1PA10 LINE L1 -34 6134 6042 633 141 10 0 chr3 113699304 113699403 -113825175 - AluJo SINE Alu -14 298 199 947 168 0 0 chr3 113699408 113699557 -113825021 - AluJo SINE Alu -163 149 1 203 284 84 42 chr3 113699777 113699872 -113824706 + L2 LINE L2 3197 3295 -18 2027 134 10 0 chr3 113700055 113700354 -113824224 - AluSx SINE Alu -10 302 1 185 262 48 0 chr3 113702013 113702055 -113822523 + L2 LINE L2 3261 3304 -9 865 173 55 59 chr3 113702165 113702385 -113822193 - MER20 DNA MER1_type 0 219 1 187 324 0 40 chr3 113703259 113703333 -113821245 - MIR SINE MIR -60 202 132 1548 132 22 52 chr3 113704901 113705173 -113819405 + AluSx SINE Alu 3 266 -46 180 0 0 0 chr3 113705182 113705202 -113819376 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2225 115 0 3 chr3 113705761 113706056 -113818522 - AluSg SINE Alu -16 294 1 309 310 17 17 chr3 113707654 113707770 -113816808 - MER117 DNA MER1_type -2 195 80 2514 215 25 11 chr3 113709480 113710047 -113814531 + MER90 LTR ERV1 1 575 0 249 311 54 0 chr3 113711470 113711544 -113813034 + L3b LINE CR1 1371 1448 -135 180 310 211 0 chr3 113711695 113711766 -113812812 + MIR3 SINE MIR 117 202 -6 180 302 75 0 chr3 113715035 113715088 -113809490 + MIR SINE MIR 205 261 -1 1742 191 3 0 chr3 113715354 113715647 -113808931 - AluJb SINE Alu -18 294 1 794 232 151 82 chr3 113716347 113716666 -113807912 + MER58B DNA MER1_type 1 341 0 213 163 0 0 chr3 113721958 113722007 -113802571 + G-rich Low_complexity Low_complexity 1 49 0 580 202 0 22 chr3 113722034 113722217 -113802361 + G-rich Low_complexity Low_complexity 1 179 0 258 260 14 0 chr3 113722217 113722290 -113802288 + GA-rich Low_complexity Low_complexity 4 77 0 548 213 0 0 chr3 113722291 113722460 -113802118 + G-rich Low_complexity Low_complexity 1 169 0 1277 103 5 5 chr3 113723046 113723230 -113801348 + AluSq SINE Alu 124 307 -6 432 247 31 10 chr3 113723268 113723365 -113801213 - MER5A DNA MER1_type -77 112 14 187 204 0 68 chr3 113723931 113723975 -113800603 - MIR3 SINE MIR -23 185 145 188 338 53 45 chr3 113724844 113724977 -113799601 - MIR SINE MIR -55 153 20 2155 113 3 0 chr3 113726457 113726750 -113797828 - AluSx SINE Alu -18 294 1 217 279 118 0 chr3 113728313 113728381 -113796197 + L2 LINE L2 3184 3259 -13 2589 59 0 0 chr3 113730494 113730801 -113793777 + AluY SINE Alu 1 307 -4 798 223 4 118 chr3 113731318 113731556 -113793022 - MER20 DNA MER1_type -3 216 6 1760 146 6 53 chr3 113732465 113732788 -113791790 - AluJo SINE Alu -4 308 1 4502 167 31 49 chr3 113733324 113734435 -113790143 + L1MA9 LINE L1 5162 6274 -38 2099 119 57 28 chr3 113734569 113734923 -113789655 + THE1B LTR MaLR 1 364 0 1552 197 0 25 chr3 113734990 113735269 -113789309 - AluJo SINE Alu -30 282 11 22 0 0 0 chr3 113735530 113735552 -113789026 + AT_rich Low_complexity Low_complexity 1 22 0 188 318 75 28 chr3 113736899 113737006 -113787572 + L2 LINE L2 3158 3269 -3 855 168 16 94 chr3 113737204 113737395 -113787183 + MER5A DNA MER1_type 3 178 -11 2204 94 0 27 chr3 113740064 113740362 -113784216 + AluSq SINE Alu 1 290 -23 192 333 0 16 chr3 113740736 113740799 -113783779 - MIR SINE MIR -192 70 9 300 269 120 48 chr3 113741628 113741795 -113782783 + L1ME4a LINE L1 5940 6118 -3 1636 168 28 6 chr3 113742271 113742592 -113781986 - L1MA7 LINE L1 -22 6269 5942 22 0 0 0 chr3 113744960 113744982 -113779596 + AT_rich Low_complexity Low_complexity 1 22 0 203 0 37 0 chr3 113745801 113745828 -113778750 + (TA)n Simple_repeat Simple_repeat 2 29 0 920 292 54 51 chr3 113746871 113747443 -113777135 + L1ME4a LINE L1 5360 5933 -188 286 133 0 0 chr3 113748123 113748168 -113776410 + MADE1 DNA Mariner 36 80 0 205 205 0 0 chr3 113750258 113750297 -113774281 + (TA)n Simple_repeat Simple_repeat 1 39 0 452 263 16 95 chr3 113750329 113750519 -113774059 - MIR SINE MIR -54 208 34 317 338 41 28 chr3 113750556 113750701 -113773877 + L1ME3A LINE L1 5790 5936 -234 205 301 181 0 chr3 113751079 113751162 -113773416 - L2 LINE L2 -1 3271 3174 735 238 61 0 chr3 113751174 113751338 -113773240 - MER45A DNA AcHobo 0 178 5 269 163 0 0 chr3 113752257 113752300 -113772278 + L2 LINE L2 3267 3309 -4 180 284 40 27 chr3 113754695 113754769 -113769809 + L3 LINE CR1 1347 1421 -156 587 314 84 26 chr3 113754840 113755066 -113769512 - MIR SINE MIR -18 244 6 187 343 141 10 chr3 113755070 113755169 -113769409 + L3 LINE CR1 1440 1551 -26 486 243 182 20 chr3 113756052 113756200 -113768378 + MER5A DNA MER1_type 18 189 0 2040 171 45 37 chr3 113756321 113756868 -113767710 + MLT2A2 LTR ERVL 1 554 0 207 344 88 34 chr3 113756930 113757314 -113767264 - L2 LINE L2 -1355 1959 1555 198 366 75 33 chr3 113757433 113757794 -113766784 - L2 LINE L2 -640 2674 2299 298 352 56 0 chr3 113757809 113757934 -113766644 - L2 LINE L2 -5 3267 3136 2440 77 0 0 chr3 113758086 113758397 -113766181 + AluY SINE Alu 1 311 0 201 263 35 0 chr3 113759674 113759731 -113764847 + MIR SINE MIR 9 67 -195 2303 219 124 13 chr3 113760460 113761210 -113763368 + L1ME2 LINE L1 5323 6155 -9 1010 178 22 6 chr3 113761628 113761808 -113762770 - MER5A DNA MER1_type 0 189 7 185 191 0 21 chr3 113762531 113762578 -113762000 + (TATATG)n Simple_repeat Simple_repeat 5 50 0 286 309 91 9 chr3 113763790 113763900 -113760678 - MIR SINE MIR -59 149 31 32 0 0 0 chr3 113764221 113764253 -113760325 + AT_rich Low_complexity Low_complexity 1 32 0 2406 80 0 10 chr3 113765065 113765378 -113759200 + AluY SINE Alu 1 310 -1 328 290 226 18 chr3 113765852 113766069 -113758509 - MIR SINE MIR 0 262 1 25 31 0 0 chr3 113766889 113766921 -113757657 + AT_rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr3 113766951 113766982 -113757596 + AT_rich Low_complexity Low_complexity 1 31 0 419 321 15 0 chr3 113767658 113767795 -113756783 - MIR SINE MIR -6 256 118 4821 190 39 40 chr3 113767795 113768248 -113756330 + MER45B DNA AcHobo 1 453 -1128 6365 29 1 1 chr3 113768248 113769005 -113755573 + L1PA4 LINE L1 5397 6153 -2 4821 190 39 40 chr3 113769005 113769584 -113754994 + MER45B DNA AcHobo 453 1032 -8 379 207 200 28 chr3 113770637 113770782 -113753796 + MIR SINE MIR 19 188 -74 1798 162 11 0 chr3 113770793 113771071 -113753507 + AluJb SINE Alu 1 281 -31 2424 77 0 6 chr3 113771414 113771726 -113752852 + AluY SINE Alu 1 310 -1 1022 66 0 0 chr3 113771947 113772083 -113752495 + L1P LINE L1 4329 4464 -1682 8471 70 14 5 chr3 113772083 113773997 -113750581 + L1PA7 LINE L1 4236 6150 -4 710 148 7 63 chr3 113774112 113774254 -113750324 - FLAM_C SINE Alu -9 134 1 261 0 0 0 chr3 113775856 113775885 -113748693 + (A)n Simple_repeat Simple_repeat 1 29 0 24 0 0 0 chr3 113775998 113776022 -113748556 + AT_rich Low_complexity Low_complexity 1 24 0 267 268 138 50 chr3 113776969 113777208 -113747370 - L2 LINE L2 -902 2412 2153 242 301 133 39 chr3 113777323 113777463 -113747115 + MIR SINE MIR 31 197 -65 1976 140 140 8 chr3 113777463 113777841 -113746737 - MSTA LTR MaLR 0 428 1 242 301 133 39 chr3 113777841 113777903 -113746675 + MIR SINE MIR 197 252 -10 827 278 29 49 chr3 113777911 113778256 -113746322 + MER46C DNA MER2_type 1 338 0 23 0 0 0 chr3 113778284 113778307 -113746271 + AT_rich Low_complexity Low_complexity 1 23 0 3488 133 71 2 chr3 113778812 113779378 -113745200 + THE1-int LTR MaLR 794 1398 -182 * 8339 149 20 15 chr3 113779372 113780912 -113743666 + L1P LINE L1 1228 2775 -3371 353 109 109 0 chr3 113781110 113781174 -113743404 - L1P LINE L1 -702 5429 5359 * 1220 91 0 11 chr3 113781169 113781345 -113743233 + L1PA15 LINE L1 4838 5011 -1135 231 36 0 0 chr3 113781378 113781406 -113743172 + (GGGAA)n Simple_repeat Simple_repeat 1 28 0 1422 154 7 25 chr3 113781407 113781693 -113742885 + L1MA4 LINE L1 6012 6292 -8 7461 138 23 18 chr3 113781893 113783186 -113741392 + HSMAR2 DNA Mariner 2 1301 -1 348 64 0 0 chr3 113783845 113783892 -113740686 + (TG)n Simple_repeat Simple_repeat 2 48 0 198 0 0 0 chr3 113784875 113784897 -113739681 + (T)n Simple_repeat Simple_repeat 1 22 0 5745 111 33 8 chr3 113784912 113785475 -113739103 + L1PA15 LINE L1 5254 5848 -317 2391 84 3 0 chr3 113785475 113785772 -113738806 + AluSp SINE Alu 1 298 -15 5745 111 33 8 chr3 113785772 113786090 -113738488 + L1PA15 LINE L1 5848 6157 -8 21 0 0 0 chr3 113786614 113786635 -113737943 + AT_rich Low_complexity Low_complexity 1 21 0 6328 137 24 7 chr3 113786643 113787651 -113736927 + ERVL-B1 LTR ERVL 4543 5567 -197 236 213 0 0 chr3 113787651 113787698 -113736880 + (TA)n Simple_repeat Simple_repeat 2 48 0 348 24 0 0 chr3 113787738 113787779 -113736799 + (TG)n Simple_repeat Simple_repeat 2 42 0 1015 164 34 29 chr3 113787787 113787995 -113736583 + ERVL-B1 LTR ERVL 5544 5752 -12 2618 194 25 20 chr3 113787999 113788535 -113736043 + MLT2B1 LTR ERVL 1 517 -37 356 59 20 0 chr3 113788535 113788586 -113735992 + (TCTA)n Simple_repeat Simple_repeat 3 54 0 2618 194 25 20 chr3 113788586 113788623 -113735955 + MLT2B1 LTR ERVL 517 552 -2 360 274 125 24 chr3 113789465 113789633 -113734945 + MIR3 SINE MIR 16 200 -8 479 319 9 43 chr3 113790031 113790241 -113734337 + L2 LINE L2 2388 2590 -724 402 21 0 0 chr3 113790358 113790405 -113734173 + (TA)n Simple_repeat Simple_repeat 1 47 0 730 300 104 45 chr3 113790442 113790916 -113733662 + L2 LINE L2 2595 3040 -273 225 108 0 0 chr3 113790916 113790953 -113733625 + (CA)n Simple_repeat Simple_repeat 1 37 0 730 300 104 45 chr3 113790953 113791024 -113733554 + L2 LINE L2 3040 3105 -208 1192 195 35 0 chr3 113791024 113791250 -113733328 + MER46A DNA MER2_type 2 235 -1 730 300 104 45 chr3 113791250 113791374 -113733204 + L2 LINE L2 3105 3309 -4 597 333 59 63 chr3 113792463 113793477 -113731101 - L2 LINE L2 -33 3239 2230 1091 227 77 40 chr3 113793972 113794298 -113730280 + MER2 DNA MER2_type 1 338 -7 706 296 61 18 chr3 113794429 113794821 -113729757 - L1ME3 LINE L1 -213 5949 5541 451 331 142 65 chr3 113794958 113795127 -113729451 - L2 LINE L2 -356 2958 2803 2338 110 0 0 chr3 113795127 113795436 -113729142 + AluSq SINE Alu 1 309 -4 451 331 142 65 chr3 113795436 113796268 -113728310 - L2 LINE L2 -511 2803 1880 199 300 60 0 chr3 113796382 113796432 -113728146 + MIR SINE MIR 96 148 -60 3786 224 54 2 chr3 113796502 113797335 -113727243 - L1M2 LINE L1 -4899 1950 1075 27 49 0 0 chr3 113797578 113797619 -113726959 + AT_rich Low_complexity Low_complexity 1 41 0 515 280 104 26 chr3 113798231 113798444 -113726134 - MIR SINE MIR -13 249 15 2813 106 18 48 chr3 113798492 113798847 -113725731 + L1MB2 LINE L1 5685 6022 -149 1909 134 7 10 chr3 113798847 113799145 -113725433 + AluSx SINE Alu 9 305 -7 2813 106 18 48 chr3 113799145 113799291 -113725287 + L1MB2 LINE L1 6022 6171 0 1708 87 0 14 chr3 113799364 113799582 -113724996 + AluSx SINE Alu 46 260 -52 1046 243 18 5 chr3 113799844 113800066 -113724512 - MIR SINE MIR -21 241 17 2337 86 3 7 chr3 113800856 113801158 -113723420 + AluSx SINE Alu 1 301 -11 1064 220 23 0 chr3 113801293 113801511 -113723067 - MER58A DNA MER1_type 0 224 2 275 273 68 11 chr3 113802049 113802137 -113722441 - L2 LINE L2 -1 3271 3179 261 118 0 0 chr3 113802144 113802195 -113722383 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 1036 217 5 5 chr3 113802285 113802488 -113722090 + MER3 DNA MER1_type 7 209 0 538 306 133 55 chr3 113802745 113803324 -113721254 - L2 LINE L2 -459 2855 2232 251 114 0 0 chr3 113804089 113804124 -113720454 + U2 snRNA snRNA 1 35 -153 375 305 114 12 chr3 113804548 113805124 -113719454 - L1ME3A LINE L1 -241 5929 5296 27 0 0 0 chr3 113805233 113805260 -113719318 + AT_rich Low_complexity Low_complexity 1 27 0 709 331 29 0 chr3 113805600 113805878 -113718700 + LTR33 LTR ERVL 1 286 -235 1411 132 5 5 chr3 113805917 113806122 -113718456 - AluSc SINE Alu -104 205 1 9014 176 22 13 chr3 113806122 113806616 -113717962 - L1P5 LINE L1 -369 5782 5294 180 0 0 0 chr3 113806616 113806636 -113717942 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 9014 176 22 13 chr3 113806636 113808459 -113716119 - L1P5 LINE L1 -857 5294 3457 739 268 127 41 chr3 113808633 113809139 -113715439 - L2 LINE L2 0 3313 2695 10346 142 36 7 chr3 113809775 113813691 -113710887 - L1PBa LINE L1 -2688 4174 3 448 182 21 33 chr3 113813692 113813824 -113710754 - L1M LINE L1 -813 5333 5211 29 28 0 0 chr3 113813834 113813870 -113710708 + AT_rich Low_complexity Low_complexity 1 36 0 1452 142 120 29 chr3 113813875 113814149 -113710429 - AluJo SINE Alu -13 299 1 393 167 0 0 chr3 113814149 113814221 -113710357 - L1 LINE L1 -920 5226 5155 407 258 45 84 chr3 113814362 113814517 -113710061 - HAL1 LINE L1 -563 1944 1796 26 0 0 0 chr3 113815399 113815425 -113709153 + AT_rich Low_complexity Low_complexity 1 26 0 412 337 22 4 chr3 113816616 113816768 -113707810 - MIR3 SINE MIR -30 178 28 286 371 106 8 chr3 113817143 113817380 -113707198 - MIR SINE MIR 0 262 3 699 186 0 0 chr3 113819557 113819670 -113704908 - AluJb SINE Alu -199 113 1 349 266 42 49 chr3 113819819 113819962 -113704616 - L2 LINE L2 -1 3312 3171 760 156 30 0 chr3 113820133 113820268 -113704310 + MER5B DNA MER1_type 40 178 0 347 270 113 32 chr3 113821768 113822016 -113702562 - LTR67 LTR ERVL -19 538 271 1669 192 0 19 chr3 113823437 113823749 -113700829 + AluJo SINE Alu 1 306 -6 384 252 109 14 chr3 113824064 113824211 -113700367 + Charlie8 DNA MER1_type 1 161 -2256 2250 162 127 20 chr3 113825601 113825748 -113698830 + MLT1D LTR MaLR 1 131 -374 788 210 88 117 chr3 113825748 113826124 -113698454 - MLT1A1 LTR MaLR 0 365 1 2250 162 127 20 chr3 113826124 113826432 -113698146 + MLT1D LTR MaLR 131 505 0 1851 121 114 0 chr3 113827336 113827643 -113696935 + L1PB4 LINE L1 5808 6149 -7 219 241 181 36 chr3 113827741 113827824 -113696754 - MIR SINE MIR -96 112 18 216 0 0 0 chr3 113828193 113828217 -113696361 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5623 20 0 1 chr3 113828219 113828868 -113695710 - L1PA4 LINE L1 -8 6147 5500 1916 59 111 15 chr3 113829660 113829930 -113694648 - AluY SINE Alu -15 296 1 246 200 0 0 chr3 113831641 113831686 -113692892 + L2 LINE L2 3219 3263 -9 4607 142 26 15 chr3 113832456 113833260 -113691318 + L1MC1 LINE L1 5516 6328 -5 25 0 0 0 chr3 113834929 113834954 -113689624 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr3 113835292 113835315 -113689263 + (TG)n Simple_repeat Simple_repeat 1 23 0 28 0 0 0 chr3 113835344 113835372 -113689206 + AT_rich Low_complexity Low_complexity 1 28 0 884 175 19 6 chr3 113836414 113836574 -113688004 + FRAM SINE Alu 3 164 -12 1384 161 17 57 chr3 113836645 113836767 -113687811 + AluJo SINE Alu 1 126 -186 2798 73 3 0 chr3 113836767 113837121 -113687457 + THE1A LTR MaLR 1 355 0 1384 161 17 57 chr3 113837121 113837297 -113687281 + AluJo SINE Alu 126 287 -25 886 284 125 15 chr3 113837401 113837809 -113686769 - L1MC4a LINE L1 -943 6865 6413 1184 203 31 75 chr3 113837980 113838339 -113686239 + Charlie1b DNA MER1_type 14 356 -167 40 0 0 0 chr3 113838390 113838430 -113686148 + AT_rich Low_complexity Low_complexity 1 40 0 762 172 0 0 chr3 113838467 113838595 -113685983 - L1PB4 LINE L1 -9 6147 6020 1193 224 3 3 chr3 113838643 113838937 -113685641 + L1 LINE L1 4925 5218 -928 286 148 0 0 chr3 113838937 113838991 -113685587 + Charlie1b DNA MER1_type 399 452 -71 2233 110 0 0 chr3 113839043 113839344 -113685234 - AluSx SINE Alu -11 301 1 540 285 86 34 chr3 113839428 113839846 -113684732 + L1MC5 LINE L1 7474 7913 -48 297 128 0 0 chr3 113840380 113840427 -113684151 + (GGGA)n Simple_repeat Simple_repeat 3 49 0 191 360 99 77 chr3 113840539 113840641 -113683937 - L2 LINE L2 -209 3063 2965 3017 143 42 37 chr3 113840641 113841186 -113683392 + LTR14 LTR ERVK 1 548 0 191 360 99 77 chr3 113841186 113841305 -113683273 - L2 LINE L2 -307 2965 2837 23 0 0 71 chr3 113842610 113842652 -113681926 + AT_rich Low_complexity Low_complexity 1 39 0 446 283 166 18 chr3 113842689 113843032 -113681546 + HAL1 LINE L1 1147 1540 -967 675 231 189 100 chr3 113843108 113843489 -113681089 + MLT1H LTR MaLR 119 533 -16 634 254 47 47 chr3 113843508 113843764 -113680814 + HAL1 LINE L1 1525 1780 -727 1530 256 70 8 chr3 113843938 113844336 -113680242 + L1M4 LINE L1 8 430 -6112 * 1865 173 42 10 chr3 113844334 113844837 -113679741 + L1MB7 LINE L1 4918 5437 -741 1107 149 87 0 chr3 113844837 113845028 -113679550 + L1PB4 LINE L1 5938 6149 -7 3330 171 49 29 chr3 113845048 113845430 -113679148 + L1MB7 LINE L1 5434 5807 -377 2054 134 0 0 chr3 113845430 113845722 -113678856 + AluSx SINE Alu 4 295 -17 3330 171 49 29 chr3 113845722 113846055 -113678523 + L1MB7 LINE L1 5807 6167 -17 1666 164 28 21 chr3 113846055 113846342 -113678236 - AluJo SINE Alu -23 289 1 3330 171 49 29 chr3 113846342 113846361 -113678217 + L1MB7 LINE L1 6167 6184 0 21 0 0 0 chr3 113846797 113846818 -113677760 + AT_rich Low_complexity Low_complexity 1 21 0 352 348 54 39 chr3 113846841 113847100 -113677478 + HAL1 LINE L1 2226 2488 -19 375 356 69 22 chr3 113848267 113848584 -113675994 + L2 LINE L2 1706 2037 -1277 192 40 0 0 chr3 113848680 113848705 -113675873 + (TTG)n Simple_repeat Simple_repeat 3 27 0 25 83 0 0 chr3 113848725 113848785 -113675793 + AT_rich Low_complexity Low_complexity 1 60 0 2310 94 3 3 chr3 113849136 113849433 -113675145 - AluSp SINE Alu -16 297 1 980 303 84 56 chr3 113849832 113850096 -113674482 + L2 LINE L2 2299 2554 -759 2168 101 10 3 chr3 113850096 113850392 -113674186 - AluSx SINE Alu -13 299 2 980 303 84 56 chr3 113850392 113851120 -113673458 + L2 LINE L2 2554 3313 0 290 75 0 0 chr3 113851679 113851719 -113672859 + L1PA6 LINE L1 6107 6146 -8 221 148 0 98 chr3 113851730 113851791 -113672787 + (A)n Simple_repeat Simple_repeat 1 55 0 6067 99 17 5 chr3 113852007 113852984 -113671594 + L1PA7 LINE L1 5163 6150 -4 714 154 8 0 chr3 113853125 113853242 -113671336 - FLAM_C SINE Alu -25 118 1 201 74 0 0 chr3 113854844 113854871 -113669707 + (A)n Simple_repeat Simple_repeat 1 27 0 196 263 158 21 chr3 113856426 113856521 -113668057 + L2 LINE L2 3206 3313 0 1639 257 212 36 chr3 113857527 113858337 -113666241 - MER45C DNA AcHobo 0 953 1 453 295 60 0 chr3 113859072 113859221 -113665357 + MIR SINE MIR 95 252 -10 423 219 0 0 chr3 113860831 113860927 -113663651 + (TCCA)n Simple_repeat Simple_repeat 4 99 0 337 331 108 0 chr3 113861407 113861555 -113663023 + MIR SINE MIR 2 165 -97 193 322 85 25 chr3 113862819 113862937 -113661641 - MIR3 SINE MIR -21 187 63 351 294 87 60 chr3 113862938 113862984 -113661594 - MIR SINE MIR -9 253 210 2203 111 0 10 chr3 113862984 113863291 -113661287 - AluSg1 SINE Alu -5 304 1 351 294 87 60 chr3 113863291 113863462 -113661116 - MIR SINE MIR -52 210 30 1711 189 60 62 chr3 113864854 113865087 -113659491 + MLT1D LTR MaLR 1 233 -272 569 52 13 0 chr3 113865087 113865164 -113659414 + (ATGGTG)n Simple_repeat Simple_repeat 4 81 0 1711 189 60 62 chr3 113865164 113865433 -113659145 + MLT1D LTR MaLR 233 502 -3 188 325 147 44 chr3 113865623 113865875 -113658703 + L3b LINE CR1 1296 1573 -10 328 135 0 0 chr3 113866210 113866262 -113658316 - MADE1 DNA Mariner -28 52 1 350 223 49 33 chr3 113866278 113866443 -113658135 + L1MC5 LINE L1 7083 7250 -728 277 288 80 8 chr3 113866446 113866571 -113658007 + L1MC4 LINE L1 7324 7457 -585 * 985 261 65 50 chr3 113866549 113867190 -113657388 + L1MC5 LINE L1 7260 7910 -51 192 40 0 0 chr3 113867977 113868002 -113656576 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 1666 166 4 7 chr3 113868009 113868286 -113656292 - AluJb SINE Alu -36 276 1 22 80 0 0 chr3 113868371 113868421 -113656157 + AT_rich Low_complexity Low_complexity 1 50 0 28 29 0 0 chr3 113868457 113868492 -113656086 + AT_rich Low_complexity Low_complexity 1 35 0 245 269 143 50 chr3 113869520 113869758 -113654820 - L2 LINE L2 -902 2412 2153 271 289 139 35 chr3 113869872 113870011 -113654567 + MIR SINE MIR 31 199 -63 1983 137 153 5 chr3 113870011 113870384 -113654194 - MSTA LTR MaLR 0 428 1 271 289 139 35 chr3 113870384 113870445 -113654133 + MIR SINE MIR 199 252 -10 815 285 29 47 chr3 113870453 113870797 -113653781 + MER46C DNA MER2_type 1 338 0 23 0 0 0 chr3 113870825 113870848 -113653730 + AT_rich Low_complexity Low_complexity 1 23 0 254 176 103 44 chr3 113871256 113871324 -113653254 - MIR3 SINE MIR -23 185 114 10057 174 12 12 chr3 113873066 113875459 -113649119 + L1P4 LINE L1 3291 5686 -479 629 223 98 19 chr3 113876095 113876200 -113648378 + L1ME1 LINE L1 5127 5222 -924 183 42 0 0 chr3 113876200 113876224 -113648354 + (TA)n Simple_repeat Simple_repeat 2 25 0 629 223 98 19 chr3 113876224 113876374 -113648204 + L1ME1 LINE L1 5222 5402 -744 740 255 0 0 chr3 113876375 113876532 -113648046 - MER58A DNA MER1_type -2 222 66 16435 80 5 1 chr3 113876562 113879608 -113644970 - L1PA7 LINE L1 -4 6150 3093 413 236 0 0 chr3 113879608 113879680 -113644898 - MER58A DNA MER1_type -35 72 1 1570 218 129 2 chr3 113879681 113880093 -113644485 + L1ME1 LINE L1 5392 5855 -311 2250 127 14 0 chr3 113880538 113880884 -113643694 + L1PA13 LINE L1 5813 6163 0 205 273 0 0 chr3 113881508 113881552 -113643026 + (TG)n Simple_repeat Simple_repeat 1 44 0 8289 69 2 7 chr3 113881939 113883015 -113641563 - MER11C LTR ERVK 0 1071 1 576 0 0 0 chr3 113883360 113883424 -113641154 + (TA)n Simple_repeat Simple_repeat 1 64 0 729 182 164 6 chr3 113885274 113885433 -113639145 + MER5A DNA MER1_type 5 188 -1 25 0 0 0 chr3 113885740 113885765 -113638813 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr3 113885976 113885998 -113638580 + AT_rich Low_complexity Low_complexity 1 22 0 1175 235 31 28 chr3 113886001 113886358 -113638220 - L1ME2 LINE L1 -10 6154 5797 21 57 0 0 chr3 113886865 113886900 -113637678 + AT_rich Low_complexity Low_complexity 1 35 0 254 302 104 0 chr3 113887553 113887649 -113636929 + MIR SINE MIR 37 142 -66 1694 236 54 44 chr3 113887916 113888504 -113636074 - L1ME1 LINE L1 -7 6159 5566 22 0 0 0 chr3 113888620 113888642 -113635936 + AT_rich Low_complexity Low_complexity 1 22 0 2051 141 7 0 chr3 113888684 113888982 -113635596 + AluSx SINE Alu 1 300 -12 2385 98 3 0 chr3 113889102 113889408 -113635170 + AluSp SINE Alu 1 307 -6 214 302 101 34 chr3 113890596 113890745 -113633833 - L2 LINE L2 -340 2973 2815 989 123 26 7 chr3 113891322 113891477 -113633101 - MER46A DNA MER2_type -2 234 77 23 33 0 0 chr3 113891538 113891568 -113633010 + AT_rich Low_complexity Low_complexity 1 30 0 1619 185 6 32 chr3 113891848 113892161 -113632417 - AluSx SINE Alu -7 305 1 246 326 66 70 chr3 113892418 113892660 -113631918 + MIR SINE MIR 1 241 -21 259 259 0 0 chr3 113892801 113892859 -113631719 + L2 LINE L2 3255 3312 -1 293 331 54 24 chr3 113893032 113893198 -113631380 - L2 LINE L2 -179 3093 2923 940 119 89 72 chr3 113894788 113895023 -113629555 + L1MA8 LINE L1 6052 6290 -1 706 132 0 0 chr3 113895222 113895328 -113629250 + U6 snRNA snRNA 1 106 -1 218 339 75 40 chr3 113896316 113896490 -113628088 - L2 LINE L2 -221 3051 2872 28 48 0 0 chr3 113896744 113896786 -113627792 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr3 113897136 113897160 -113627418 + AT_rich Low_complexity Low_complexity 1 24 0 216 67 0 0 chr3 113897565 113897595 -113626983 + (T)n Simple_repeat Simple_repeat 1 30 0 642 231 6 35 chr3 113898328 113898501 -113626077 - L2 LINE L2 0 3313 3146 2180 117 0 23 chr3 113898503 113898810 -113625768 + AluSx SINE Alu 1 300 -12 369 0 0 0 chr3 113898812 113898853 -113625725 + (CA)n Simple_repeat Simple_repeat 2 42 0 591 331 107 15 chr3 113898870 113899245 -113625333 + MLT1I LTR MaLR 1 409 0 2979 276 91 17 chr3 113899247 113900314 -113624264 - L2 LINE L2 -172 3141 2010 225 234 0 0 chr3 113900288 113900335 -113624243 - MIR SINE MIR -72 136 90 * 347 333 91 30 chr3 113900512 113900710 -113623868 - L2 LINE L2 -1176 2138 1929 308 198 111 95 chr3 113901159 113901285 -113623293 + L1MCc LINE L1 25 152 -6271 437 316 38 38 chr3 113901323 113901532 -113623046 + L1MCc LINE L1 246 454 -5969 2166 227 45 42 chr3 113901742 113901797 -113622781 + L1MCc LINE L1 835 888 -5534 2863 7 0 0 chr3 113901797 113902107 -113622471 + AluY SINE Alu 1 310 -1 2166 227 45 42 chr3 113902107 113902797 -113621781 + L1MCc LINE L1 888 1574 -4848 542 242 108 15 chr3 113902868 113903128 -113621450 + L1MCc LINE L1 1754 2037 -4904 2475 199 8 45 chr3 113903134 113903661 -113620917 + MLT1E2 LTR MaLR 118 624 -2 1174 329 212 27 chr3 113904293 113905607 -113618971 + L2 LINE L2 834 2390 -924 675 253 68 32 chr3 113905661 113905851 -113618727 - MIR SINE MIR -21 241 45 396 300 105 84 chr3 113905901 113906601 -113617977 + L2 LINE L2 2435 3171 -142 3864 118 55 7 chr3 113906601 113907185 -113617393 + LTR9 LTR ERV1 1 612 0 396 300 105 84 chr3 113907185 113907309 -113617269 + L2 LINE L2 3171 3291 -22 232 295 0 0 chr3 113908170 113908231 -113616347 - L2 LINE L2 -2 3311 3251 383 137 0 0 chr3 113908965 113909016 -113615562 + MER58A DNA MER1_type 9 59 -165 * 581 187 56 0 chr3 113909003 113909110 -113615468 + MER58A DNA MER1_type 112 224 0 380 348 44 13 chr3 113909552 113909710 -113614868 + MIR3 SINE MIR 31 193 -15 2027 141 0 7 chr3 113909807 113910111 -113614467 + AluSx SINE Alu 1 302 -10 1730 67 0 5 chr3 113911276 113911500 -113613078 - L1PA7 LINE L1 -1 6153 5931 509 296 72 0 chr3 113911825 113911977 -113612601 - MIR3 SINE MIR -17 191 29 181 216 0 0 chr3 113912776 113912813 -113611765 + L2 LINE L2 3275 3311 -2 21 0 0 0 chr3 113914448 113914469 -113610109 + AT_rich Low_complexity Low_complexity 1 21 0 3351 216 9 3 chr3 113915368 113916017 -113608561 - MER82 DNA MER2_type 0 653 1 360 299 14 42 chr3 113916032 113916176 -113608402 - MIR3 SINE MIR -67 141 2 2399 218 56 9 chr3 113916679 113917247 -113607331 + L1ME1 LINE L1 5468 6062 -104 2657 210 13 24 chr3 113919850 113920393 -113604185 - MLT1F LTR MaLR -5 537 1 189 172 219 16 chr3 113921425 113921489 -113603089 + MER5A DNA MER1_type 36 112 -77 879 209 11 21 chr3 113921574 113921765 -113602813 + MER5A DNA MER1_type 1 189 0 861 104 8 0 chr3 113922817 113922942 -113601636 - AluY SINE Alu -11 300 175 201 215 13 63 chr3 113923993 113924072 -113600506 + GA-rich Low_complexity Low_complexity 2 76 0 1833 132 79 28 chr3 113924509 113924864 -113599714 - THE1C LTR MaLR 0 375 3 21 57 0 0 chr3 113926005 113926040 -113598538 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr3 113926376 113926397 -113598181 + AT_rich Low_complexity Low_complexity 1 21 0 472 209 144 39 chr3 113926748 113926901 -113597677 + MER5B DNA MER1_type 1 169 -9 2390 88 0 0 chr3 113927787 113928095 -113596483 - AluY SINE Alu -3 308 1 1755 238 92 23 chr3 113928648 113929118 -113595460 + MLT1E LTR MaLR 92 593 0 1914 149 0 0 chr3 113929121 113929390 -113595188 - AluSx SINE Alu -20 292 24 211 268 18 0 chr3 113929407 113929463 -113595115 + MIR SINE MIR 119 175 -87 315 179 167 0 chr3 113930369 113930453 -113594125 + MIR SINE MIR 109 206 -56 184 257 248 9 chr3 113931347 113931456 -113593122 + L2 LINE L2 3179 3313 0 463 246 31 15 chr3 113931515 113931620 -113592958 + MIR SINE MIR 66 175 -87 1285 168 150 57 chr3 113931620 113931954 -113592624 + MLT1A1 LTR MaLR 1 365 0 463 246 31 15 chr3 113931954 113931978 -113592600 + MIR SINE MIR 175 197 -65 192 262 24 0 chr3 113932895 113932937 -113591641 - L2 LINE L2 -11 3261 3219 * 477 254 170 12 chr3 113932903 113933068 -113591510 - MIR SINE MIR -13 249 59 299 212 24 0 chr3 113933193 113933278 -113591300 + (TA)n Simple_repeat Simple_repeat 1 87 0 266 240 169 71 chr3 113933414 113933568 -113591010 + MIR3 SINE MIR 1 169 -39 21 57 0 0 chr3 113933629 113933664 -113590914 + AT_rich Low_complexity Low_complexity 1 35 0 261 250 130 10 chr3 113936716 113936816 -113587762 - MIR SINE MIR -55 207 96 713 228 37 0 chr3 113936910 113937072 -113587506 - MIR SINE MIR -11 251 84 184 297 119 42 chr3 113938165 113938283 -113586295 + L2 LINE L2 3182 3308 -5 1540 223 111 25 chr3 113938370 113938846 -113585732 + LTR40a LTR ERVL 1 517 -2 1463 52 0 0 chr3 113939581 113939753 -113584825 - AluY SINE Alu -9 302 131 21 0 0 0 chr3 113939978 113939999 -113584579 + AT_rich Low_complexity Low_complexity 1 21 0 671 185 33 26 chr3 113940660 113940811 -113583767 - MER6A DNA MER2_type -395 210 59 292 256 0 99 chr3 113940820 113940849 -113583729 - L1MA10 LINE L1 -58 6276 6248 4161 242 55 47 chr3 113940849 113942194 -113582384 - L1ME1 LINE L1 -66 6100 4632 1594 181 0 36 chr3 113942194 113942497 -113582081 - AluJo SINE Alu -20 292 1 4161 242 55 47 chr3 113942497 113943462 -113581116 - L1ME1 LINE L1 -1534 4632 3676 6840 137 40 11 chr3 113943482 113945835 -113578743 - L1MA3 LINE L1 0 6305 3879 * 29264 71 5 6 chr3 113945824 113950759 -113573819 - L1PA6 LINE L1 0 6154 1228 9362 104 27 0 chr3 113950753 113952114 -113572464 - THE1B-int LTR MaLR -182 1398 1 * 1096 127 66 8 chr3 113952114 113952356 -113572222 - THE1B LTR MaLR 0 355 1 313 284 78 7 chr3 113952479 113952620 -113571958 - MIR SINE MIR -34 228 78 234 314 29 0 chr3 113953149 113953219 -113571359 - MIR SINE MIR -73 135 64 4458 66 18 17 chr3 113954634 113955671 -113568907 - MER11A LTR ERVK 0 1266 1 1670 207 29 45 chr3 113955974 113956462 -113568116 - MLT1D LTR MaLR 0 505 26 2377 85 0 19 chr3 113956563 113956870 -113567708 + AluY SINE Alu 1 301 -10 2209 121 3 10 chr3 113956875 113957189 -113567389 + AluSx SINE Alu 1 312 0 236 75 0 25 chr3 113957384 113957424 -113567154 - L1MA3 LINE L1 -11 6294 6256 * 308 122 0 0 chr3 113957412 113957461 -113567117 + L1 LINE L1 5139 5187 -959 346 296 131 52 chr3 113957569 113957897 -113566681 + L1ME4a LINE L1 5581 5934 -187 273 29 0 0 chr3 113958604 113958638 -113565940 + (TG)n Simple_repeat Simple_repeat 2 35 0 1068 194 55 0 chr3 113960644 113960861 -113563717 - MER46A DNA MER2_type -7 229 1 182 339 0 31 chr3 113961409 113961474 -113563104 + L2 LINE L2 3194 3256 -16 279 289 74 22 chr3 113961667 113961802 -113562776 + L3 LINE CR1 1374 1515 -62 1058 177 42 23 chr3 113962472 113962687 -113561891 + MER20 DNA MER1_type 1 219 0 990 216 37 37 chr3 113962764 113962982 -113561596 + MER58A DNA MER1_type 4 221 -3 2024 103 0 0 chr3 113964097 113964382 -113560196 - AluSg SINE Alu 0 307 23 21 36 0 0 chr3 113964660 113964688 -113559890 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 113964915 113964939 -113559639 + AT_rich Low_complexity Low_complexity 1 24 0 8066 175 28 15 chr3 113964972 113966685 -113557893 - L1PB3 LINE L1 -7 6204 4515 303 85 0 0 chr3 113966685 113966732 -113557846 + (TG)n Simple_repeat Simple_repeat 2 48 0 8066 175 28 15 chr3 113966732 113967882 -113556696 - L1PB3 LINE L1 -1696 4515 3301 424 121 0 55 chr3 113967882 113967973 -113556605 - L1PA11 LINE L1 -1 6173 6088 8066 175 28 15 chr3 113967973 113968033 -113556545 - L1PB3 LINE L1 -2910 3301 3243 225 0 0 0 chr3 113968041 113968066 -113556512 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1511 172 0 4 chr3 113968066 113968292 -113556286 - AluJb SINE Alu -32 280 56 2793 185 8 2 chr3 113968294 113968803 -113555775 - L1PB3 LINE L1 -5692 512 1 * 3287 301 34 28 chr3 113968774 113970396 -113554182 - L1PBa LINE L1 -5230 1633 3 650 284 71 11 chr3 113970413 113970794 -113553784 + L1M4 LINE L1 3543 3946 -2200 300 289 0 33 chr3 113970890 113970980 -113553598 + L1M4 LINE L1 4886 4972 -1174 2284 108 19 25 chr3 113970980 113971340 -113553238 - THE1B LTR MaLR 0 364 7 246 258 72 0 chr3 113971347 113971444 -113553134 + L1M4 LINE L1 4969 5072 -1074 750 65 19 0 chr3 113971568 113971676 -113552902 - L1PA13 LINE L1 0 6163 6054 5454 101 6 8 chr3 113971762 113972782 -113551796 - L1PA12 LINE L1 -132 6036 5017 2848 104 4 19 chr3 113972801 113973262 -113551316 - L1PA8 LINE L1 0 6172 5719 274 266 0 0 chr3 113973454 113973533 -113551045 - LTR67 LTR ERVL 0 557 479 339 213 11 32 chr3 113973662 113973756 -113550822 - LTR67 LTR ERVL -66 491 400 306 309 56 19 chr3 113973969 113974131 -113550447 + HAL1b LINE L1 1174 1341 -7 191 171 0 186 chr3 113974285 113974355 -113550223 + MIR SINE MIR 109 165 -97 11565 31 5 0 chr3 113974497 113976144 -113548434 + L1P2 LINE L1 3944 5596 -559 328 311 54 67 chr3 113976308 113976639 -113547939 + L2 LINE L2 2565 2891 -423 5000 153 24 9 chr3 113977659 113978681 -113545897 - L1MA9 LINE L1 -111 6201 5164 12034 53 12 1 chr3 113979353 113979962 -113544616 + L1P LINE L1 787 1387 -4759 190 0 67 0 chr3 113979962 113979992 -113544586 + (AAATG)n Simple_repeat Simple_repeat 4 35 0 12034 53 12 1 chr3 113979992 113980993 -113543585 + L1P LINE L1 1387 2416 -3730 3708 27 0 0 chr3 113981094 113981532 -113543046 + L1PA4 LINE L1 5717 6154 -1 23 78 0 0 chr3 113981532 113981583 -113542995 + AT_rich Low_complexity Low_complexity 1 51 0 21 0 0 0 chr3 113981888 113981909 -113542669 + AT_rich Low_complexity Low_complexity 1 21 0 1700 162 31 37 chr3 113981909 113982261 -113542317 + L1M3 LINE L1 5284 5633 -547 3622 149 28 2 chr3 113982281 113982557 -113542021 + Tigger1 DNA MER2_type 26 293 -2125 201 39 0 0 chr3 113982557 113982583 -113541995 + (TG)n Simple_repeat Simple_repeat 2 27 0 3622 149 28 2 chr3 113982583 113982888 -113541690 + Tigger1 DNA MER2_type 293 622 -1796 301 68 0 0 chr3 113982891 113982935 -113541643 + L1PA6 LINE L1 6106 6149 -5 1269 253 11 8 chr3 113983295 113983560 -113541018 - MER45C DNA AcHobo -687 266 1 348 24 0 0 chr3 113984065 113984106 -113540472 + (CA)n Simple_repeat Simple_repeat 2 42 0 311 280 127 33 chr3 113984239 113984514 -113540064 + L1ME4a LINE L1 5815 6115 -6 24 0 0 0 chr3 113984572 113984596 -113539982 + AT_rich Low_complexity Low_complexity 1 24 0 417 204 176 32 chr3 113984835 113985003 -113539575 - MLT1J2 LTR MaLR 0 428 264 180 148 19 37 chr3 113985068 113985122 -113539456 + (TG)n Simple_repeat Simple_repeat 2 54 0 290 111 56 0 chr3 113986254 113986308 -113538270 + GA-rich Low_complexity Low_complexity 2 58 0 2167 129 0 3 chr3 113986640 113986951 -113537627 + AluSx SINE Alu 1 310 -2 488 129 0 0 chr3 113987492 113987577 -113537001 + L1MA9 LINE L1 6223 6307 -5 493 301 92 0 chr3 113987720 113987893 -113536685 - MER5A DNA MER1_type 0 189 1 1530 206 114 41 chr3 113988783 113989248 -113535330 + MLT1D LTR MaLR 7 505 0 1711 91 0 0 chr3 113989462 113989692 -113534886 + L1P LINE L1 4 233 -5913 1110 50 7 0 chr3 113990187 113990326 -113534252 + MER107 DNA MER1_type 6 145 -52 209 83 28 0 chr3 113990326 113990362 -113534216 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2668 80 11 0 chr3 113990534 113990883 -113533695 + THE1A LTR MaLR 1 353 -2 272 313 25 0 chr3 113991666 113991746 -113532832 - L2 LINE L2 -8 3264 3183 1461 128 78 4 chr3 113992548 113992805 -113531773 + L1MB2 LINE L1 5889 6164 -7 872 149 1 1 chr3 113992857 113993004 -113531574 + L1P4 LINE L1 5693 5838 -342 288 167 0 0 chr3 113992993 113993041 -113531537 + L1PA16 LINE L1 5940 5987 -179 * 420 111 0 0 chr3 113993039 113993102 -113531476 - L1PA8 LINE L1 -5 6167 6105 955 189 29 0 chr3 113993103 113993278 -113531300 + L1PA16 LINE L1 5981 6160 -6 387 354 77 41 chr3 113993924 113994627 -113529951 + L2 LINE L2 2317 3060 -212 329 306 39 19 chr3 113995057 113995315 -113529263 + L1 LINE L1 4290 4552 -1594 259 305 17 17 chr3 113996031 113996149 -113528429 + MLT1H LTR MaLR 419 536 -13 685 296 39 0 chr3 113996240 113996419 -113528159 + LTR33 LTR ERVL 1 186 -335 1550 218 96 21 chr3 113996607 113997074 -113527504 + MLT1D LTR MaLR 1 502 -3 7679 24 1 0 chr3 113998052 113999258 -113525320 + L1PA4 LINE L1 4949 6155 0 1468 126 63 43 chr3 114000271 114000572 -113524006 - L1MA6 LINE L1 -1 6299 5993 522 288 27 36 chr3 114001451 114001670 -113522908 + LTR33 LTR ERVL 305 521 0 224 272 221 19 chr3 114001818 114001976 -113522602 - L2 LINE L2 -6 3307 3118 5136 149 53 27 chr3 114002187 114003470 -113521108 - L1MA4A LINE L1 -1 6302 4996 256 296 0 0 chr3 114004249 114004303 -113520275 - L2 LINE L2 -9 3263 3210 238 186 47 0 chr3 114004633 114004676 -113519902 + MER70B LTR ERVL 454 498 -80 24 32 0 0 chr3 114006095 114006126 -113518452 + AT_rich Low_complexity Low_complexity 1 31 0 247 274 237 37 chr3 114006521 114006656 -113517922 - MIR3 SINE MIR -27 181 20 2843 85 0 3 chr3 114006735 114007099 -113517479 + THE1B LTR MaLR 1 363 -1 23 33 0 0 chr3 114008030 114008060 -113516518 + AT_rich Low_complexity Low_complexity 1 30 0 262 61 0 0 chr3 114008241 114008274 -113516304 - MLT2B3 LTR ERVL 0 554 522 1398 96 0 5 chr3 114008274 114008461 -113516117 + THE1B LTR MaLR 36 221 -143 2155 204 101 13 chr3 114008536 114008991 -113515587 - MLT2B3 LTR ERVL -57 497 3 433 234 82 54 chr3 114009063 114009247 -113515331 - L1ME LINE L1 -391 5730 5542 246 32 0 0 chr3 114009611 114009642 -113514936 + (TG)n Simple_repeat Simple_repeat 2 32 0 3664 160 20 12 chr3 114010613 114011305 -113513273 + L1MB4 LINE L1 5481 6178 -2 1747 204 27 27 chr3 114011986 114012354 -113512224 + MLT1A2 LTR MaLR 1 368 -6 261 83 0 0 chr3 114012811 114012847 -113511731 + (T)n Simple_repeat Simple_repeat 1 36 0 2274 123 0 0 chr3 114014656 114014965 -113509613 - AluSq SINE Alu -4 309 1 517 203 0 109 chr3 114015004 114015132 -113509446 - L2 LINE L2 0 3313 3200 202 312 93 20 chr3 114015752 114015885 -113508693 - MER5A DNA MER1_type -31 158 6 2058 135 7 0 chr3 114017466 114017763 -113506815 + AluSx SINE Alu 1 299 -13 341 200 10 30 chr3 114017905 114018005 -113506573 + L1MB3 LINE L1 6084 6181 -2 936 48 16 8 chr3 114018566 114018691 -113505887 - AluY SINE Alu -12 299 174 250 387 105 8 chr3 114019223 114019347 -113505231 - L2 LINE L2 -12 3260 3125 247 118 0 0 chr3 114019590 114019624 -113504954 - U1 snRNA snRNA -128 37 4 1659 183 95 50 chr3 114019873 114020315 -113504263 + MLT1C LTR MaLR 6 467 0 25 31 0 0 chr3 114021042 114021074 -113503504 + AT_rich Low_complexity Low_complexity 1 32 0 189 0 0 0 chr3 114021729 114021750 -113502828 + (CA)n Simple_repeat Simple_repeat 2 22 0 379 296 104 36 chr3 114021774 114022082 -113502496 + L1ME2 LINE L1 5558 5886 -278 1921 114 16 7 chr3 114022083 114022391 -113502187 + Tigger1 DNA MER2_type 598 908 -1510 1346 111 20 0 chr3 114022383 114022581 -113501997 + Tigger1 DNA MER2_type 1797 1998 -420 * 682 153 69 0 chr3 114022582 114022713 -113501865 + L1MB3 LINE L1 6042 6181 -2 193 197 197 66 chr3 114023457 114023579 -113500999 + MIR SINE MIR 115 252 -10 333 289 170 7 chr3 114023599 114023734 -113500844 - MIR SINE MIR -30 232 76 226 316 21 0 chr3 114024033 114024128 -113500450 + L1ME4a LINE L1 5674 5770 -2038 233 231 138 31 chr3 114024224 114024354 -113500224 + L1ME4a LINE L1 5960 6103 -18 569 200 31 15 chr3 114024748 114024878 -113499700 + MER103 DNA DNA 4 135 -31 1853 128 147 26 chr3 114025465 114025847 -113498731 - MSTA LTR MaLR 0 428 1 1811 193 21 21 chr3 114026112 114026486 -113498092 - MLT1A2 LTR MaLR 0 374 1 486 262 20 54 chr3 114027865 114028014 -113496564 - MER5B DNA MER1_type 0 178 35 2485 143 31 12 chr3 114028027 114028448 -113496130 - Tigger2a DNA MER2_type -5 429 1 2151 133 0 3 chr3 114028683 114028991 -113495587 - AluSq SINE Alu -4 309 3 962 219 90 64 chr3 114030484 114030940 -113493638 + LTR37B LTR ERV1 1 468 0 498 301 45 0 chr3 114031194 114031442 -113493136 + L1 LINE L1 3734 4001 -2145 467 306 53 45 chr3 114031736 114032001 -113492577 + L1 LINE L1 4341 4607 -1539 324 70 0 0 chr3 114032114 114032157 -113492421 + (TG)n Simple_repeat Simple_repeat 1 43 0 1565 146 154 107 chr3 114035075 114035563 -113489015 + MLT2B1 LTR ERVL 3 513 -7 833 252 29 8 chr3 114036722 114036964 -113487614 - MLT1K LTR MaLR 0 588 342 363 281 59 22 chr3 114037023 114037158 -113487420 - MLT1K LTR MaLR -341 247 108 186 209 0 0 chr3 114037744 114037787 -113486791 + CT-rich Low_complexity Low_complexity 2 44 0 315 104 0 0 chr3 114037787 114037835 -113486743 + (CA)n Simple_repeat Simple_repeat 1 48 0 612 244 36 30 chr3 114038210 114038378 -113486200 - MER5B DNA MER1_type -1 177 9 190 265 44 59 chr3 114039957 114040025 -113484553 - L2 LINE L2 -43 3270 3204 929 150 27 16 chr3 114040453 114040640 -113483938 - MER53 DNA DNA 0 189 1 338 121 15 0 chr3 114041413 114041479 -113483099 + (TG)n Simple_repeat Simple_repeat 1 67 0 231 125 0 0 chr3 114041478 114041518 -113483060 + (GA)n Simple_repeat Simple_repeat 1 40 0 * 1924 176 23 3 chr3 114042002 114042354 -113482224 - MLT1A1 LTR MaLR -6 359 1 9389 84 6 1 chr3 114042859 114044934 -113479644 + L1PA7 LINE L1 4077 6154 0 527 237 112 36 chr3 114044963 114045241 -113479337 - L1ME4a LINE L1 -32 6089 5791 314 235 64 70 chr3 114045295 114045482 -113479096 - L1ME4a LINE L1 -322 5799 5614 711 214 10 45 chr3 114045839 114046040 -113478538 + L1ME3 LINE L1 5821 6014 -148 1598 189 82 25 chr3 114046210 114046477 -113478101 - MLT1C LTR MaLR 0 467 164 1512 72 5 5 chr3 114046477 114046685 -113477893 - L1PA13 LINE L1 -6 6157 5950 1598 189 82 25 chr3 114046685 114046856 -113477722 - MLT1C LTR MaLR -303 164 4 845 137 95 24 chr3 114049284 114049452 -113475126 + MER21A LTR ERV1 414 593 -338 292 176 0 0 chr3 114049547 114049598 -113474980 - MER52A LTR ERV1 -526 1229 1179 861 174 0 45 chr3 114049599 114049777 -113474801 - MER21-int LTR ERV1 -3436 755 586 1295 133 92 37 chr3 114049874 114050145 -113474433 + MER21A LTR ERV1 646 931 0 14274 126 13 16 chr3 114050145 114051330 -113473248 + MER21A-int LTR ERV1 1 1188 -3003 1508 169 3 92 chr3 114051330 114051656 -113472922 + AluJo SINE Alu 1 297 -15 1871 169 3 10 chr3 114051656 114051964 -113472614 + AluJb SINE Alu 1 306 -6 14274 126 13 16 chr3 114051964 114053290 -113471288 + MER21A-int LTR ERV1 1186 2439 -1752 2662 121 36 15 chr3 114053290 114053760 -113470818 + L1MA2 LINE L1 5818 6297 -7 916 145 0 0 chr3 114053787 114053911 -113470667 + FLAM_C SINE Alu 1 124 -19 24 50 0 33 chr3 114053912 114053940 -113470638 + AT_rich Low_complexity Low_complexity 1 28 -30 2204 117 0 0 chr3 114053940 114054223 -113470355 + AluSg SINE Alu 1 283 -27 510 61 0 0 chr3 114054223 114054289 -113470289 + (GGAA)n Simple_repeat Simple_repeat 3 68 0 24 50 0 33 chr3 114054289 114054319 -113470259 + AT_rich Low_complexity Low_complexity 26 58 0 10647 119 17 23 chr3 114054319 114054707 -113469871 + MER21A-int LTR ERV1 2431 2820 -1371 1800 170 0 10 chr3 114054707 114055001 -113469577 + AluJb SINE Alu 1 291 -21 267 0 45 23 chr3 114055001 114055045 -113469533 + (TA)n Simple_repeat Simple_repeat 2 46 0 10647 119 17 23 chr3 114055045 114056426 -113468152 + MER21A-int LTR ERV1 2818 4191 0 805 122 198 0 chr3 114056426 114056598 -113467980 + MER21A LTR ERV1 1 206 -725 1979 137 48 0 chr3 114056612 114056905 -113467673 - AluSq SINE Alu -6 307 1 955 206 124 0 chr3 114056980 114057174 -113467404 + MER21B LTR ERV1 279 496 -367 249 200 0 0 chr3 114057217 114057257 -113467321 - MER5A DNA MER1_type 0 189 150 1348 224 15 3 chr3 114057257 114057600 -113466978 + L1P LINE L1 3316 3662 -2484 4683 168 58 27 chr3 114057600 114057769 -113466809 + Charlie1 DNA MER1_type 1601 1763 -998 2066 182 124 7 chr3 114057769 114058220 -113466358 - MLT1D LTR MaLR 0 505 2 4683 168 58 27 chr3 114058220 114058335 -113466243 + Charlie1 DNA MER1_type 1763 1873 -888 1833 171 13 0 chr3 114058335 114058634 -113465944 - AluJb SINE Alu -9 303 1 4683 168 58 27 chr3 114058634 114059457 -113465121 + Charlie1 DNA MER1_type 1873 2743 -18 1407 224 33 22 chr3 114060147 114060665 -113463913 - MER77 LTR ERV1 -4 601 54 203 88 29 0 chr3 114060672 114060706 -113463872 + (TTA)n Simple_repeat Simple_repeat 2 36 0 534 204 19 9 chr3 114060706 114060814 -113463764 - FRAM SINE Alu -30 146 38 298 346 0 0 chr3 114061439 114061569 -113463009 + MER117 DNA MER1_type 39 168 -29 472 302 80 11 chr3 114061991 114062178 -113462400 - MIR SINE MIR -9 253 55 22 0 0 0 chr3 114062302 114062324 -113462254 + AT_rich Low_complexity Low_complexity 1 22 0 1713 109 0 0 chr3 114063142 114063398 -113461180 - L1PA13 LINE L1 -4 6159 5904 3489 78 16 0 chr3 114063401 114063913 -113460665 - L1PA13 LINE L1 -386 5782 5263 1850 126 115 8 chr3 114063924 114064280 -113460298 - MSTA LTR MaLR 0 428 35 385 266 15 118 chr3 114064341 114064544 -113460034 - MIR3 SINE MIR -11 197 16 1096 224 0 18 chr3 114064586 114064814 -113459764 - MER58A DNA MER1_type 0 224 1 251 320 10 48 chr3 114065892 114065995 -113458583 + L2 LINE L2 3173 3271 -1 351 302 60 66 chr3 114066193 114066375 -113458203 - L3 LINE CR1 -1 1576 1396 1134 181 108 0 chr3 114066426 114066714 -113457864 + MER33 DNA MER1_type 2 320 -4 7911 26 8 0 chr3 114067041 114068766 -113455812 - L1PA3 LINE L1 0 6155 4434 219 88 0 0 chr3 114069303 114069337 -113455241 + (CA)n Simple_repeat Simple_repeat 1 34 0 685 244 22 0 chr3 114070200 114070380 -113454198 - MER5A DNA MER1_type -3 186 3 573 202 0 0 chr3 114070710 114070814 -113453764 + U13 snRNA snRNA 1 104 0 808 257 132 58 chr3 114071331 114071734 -113452844 + L3 LINE CR1 900 1334 -243 386 301 174 5 chr3 114071734 114071930 -113452648 + MIR SINE MIR 3 231 -31 466 310 56 7 chr3 114071969 114072111 -113452467 + L3 LINE CR1 1418 1566 -11 450 272 75 14 chr3 114072198 114072345 -113452233 + L2 LINE L2 3116 3271 -1 1462 204 7 18 chr3 114075395 114075669 -113448909 - AluJo SINE Alu -30 282 12 350 248 50 10 chr3 114075685 114075786 -113448792 - MIR SINE MIR -108 154 50 1154 141 0 0 chr3 114076655 114076847 -113447731 - L1PB1 LINE L1 -154 5997 5806 248 360 56 0 chr3 114076848 114076937 -113447641 - MIR SINE MIR -57 151 58 208 274 36 48 chr3 114077082 114077166 -113447412 + L2 LINE L2 3186 3268 -45 198 0 0 0 chr3 114077372 114077394 -113447184 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 1362 104 0 5 chr3 114078950 114079151 -113445427 - L1PB1 LINE L1 -1 6150 5951 748 152 0 8 chr3 114079199 114079324 -113445254 + Tigger3(Golem) DNA MER2_type 2905 3028 -1 1806 132 40 36 chr3 114079852 114080156 -113444422 + AluJb SINE Alu 1 305 -7 416 285 24 0 chr3 114080684 114080807 -113443771 - Charlie8 DNA MER1_type -2291 126 1 336 259 116 20 chr3 114080908 114081055 -113443523 + L1ME4a LINE L1 5950 6110 -11 1806 164 132 11 chr3 114081617 114081995 -113442583 + MSTA LTR MaLR 1 424 -4 8490 175 8 59 chr3 114081999 114083738 -113440840 + MSTA-int LTR MaLR 2 1651 0 1768 164 133 16 chr3 114083738 114084121 -113440457 + MSTA LTR MaLR 1 428 0 1879 164 0 13 chr3 114087584 114087889 -113436689 + AluJb SINE Alu 1 301 -11 2661 206 17 49 chr3 114088156 114088810 -113435768 + LTR27 LTR ERV1 2 634 -2 1658 69 0 0 chr3 114090576 114090793 -113433785 - L1PA5 LINE L1 0 6154 5938 2215 93 14 0 chr3 114092729 114093019 -113431559 + AluSx SINE Alu 1 294 -18 234 171 0 0 chr3 114093020 114093061 -113431517 + L1MC4a LINE L1 7483 7523 -285 768 169 133 0 chr3 114093062 114093257 -113431321 + L1MD3 LINE L1 7756 7976 -19 2124 107 0 21 chr3 114096585 114096876 -113427702 + AluSx SINE Alu 1 285 -27 261 83 0 0 chr3 114098122 114098158 -113426420 + (CA)n Simple_repeat Simple_repeat 1 36 0 21 36 0 0 chr3 114098597 114098625 -113425953 + AT_rich Low_complexity Low_complexity 1 28 0 276 330 155 16 chr3 114101164 114101358 -113423220 + MIR SINE MIR 40 260 -2 268 339 109 12 chr3 114102696 114102861 -113421717 - L2 LINE L2 -10 3262 3082 228 283 0 101 chr3 114103484 114103583 -113420995 + L2 LINE L2 3208 3296 -17 461 273 68 37 chr3 114104050 114104211 -113420367 - MIR3 SINE MIR -23 185 20 2440 99 0 0 chr3 114104899 114105212 -113419366 - AluSq SINE Alu 0 313 1 1852 197 42 18 chr3 114106741 114107192 -113417386 + MLT1C LTR MaLR 6 467 0 1995 106 13 0 chr3 114107562 114107865 -113416713 - Tigger4(Zombi) DNA MER2_type -1 2730 2424 1092 196 33 0 chr3 114107868 114108082 -113416496 - Tigger4(Zombi) DNA MER2_type -2508 223 3 12378 104 7 55 chr3 114109074 114111713 -113412865 + L1P3 LINE L1 1 2621 -3840 6666 66 20 0 chr3 114111717 114112753 -113411825 + L1PA7 LINE L1 5099 6152 -2 1807 193 3 6 chr3 114112782 114113093 -113411485 - AluJo SINE Alu -2 310 1 351 323 38 35 chr3 114113174 114113346 -113411232 - MIR SINE MIR -50 212 39 612 327 120 32 chr3 114113701 114114169 -113410409 - L2 LINE L2 -1 3312 2804 754 311 44 74 chr3 114114191 114114420 -113410158 - L2 LINE L2 -616 2698 2464 2333 102 0 3 chr3 114114420 114114723 -113409855 + AluSq SINE Alu 1 302 -11 754 311 44 74 chr3 114114723 114115033 -113409545 - L2 LINE L2 -850 2464 2175 1569 179 31 10 chr3 114119496 114119786 -113404792 + AluJo SINE Alu 1 296 -16 2324 97 3 0 chr3 114119990 114120289 -113404289 + AluSp SINE Alu 1 300 -13 436 314 0 8 chr3 114120295 114120413 -113404165 - MER5B DNA MER1_type -25 153 37 2275 105 73 14 chr3 114120798 114121142 -113403436 + THE1B LTR MaLR 1 364 0 750 286 113 23 chr3 114121501 114121899 -113402679 + LTR33 LTR ERVL 3 436 -85 1072 165 0 69 chr3 114122540 114122758 -113401820 + AluJo SINE Alu 87 289 -23 293 299 91 46 chr3 114123120 114123317 -113401261 - MIR3 SINE MIR -2 206 1 25 0 0 0 chr3 114124463 114124488 -113400090 + AT_rich Low_complexity Low_complexity 1 25 0 478 231 15 15 chr3 114124792 114124926 -113399652 - Charlie8 DNA MER1_type -2199 218 85 195 345 100 45 chr3 114125161 114125271 -113399307 + L2 LINE L2 3127 3242 -30 198 103 0 0 chr3 114125276 114125305 -113399273 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 23 33 0 0 chr3 114126763 114126793 -113397785 + AT_rich Low_complexity Low_complexity 1 30 0 205 314 14 14 chr3 114126957 114127027 -113397551 - L2 LINE L2 -2 3270 3201 1851 101 114 135 chr3 114127399 114127836 -113396742 + MSTA LTR MaLR 1 428 0 1138 72 12 6 chr3 114128730 114128896 -113395682 + (GAAA)n Simple_repeat Simple_repeat 2 168 0 312 188 0 0 chr3 114128988 114129052 -113395526 + (CA)n Simple_repeat Simple_repeat 1 64 0 495 264 97 68 chr3 114131102 114131484 -113393094 + LTR37B LTR ERV1 7 399 -69 473 333 83 25 chr3 114131720 114131960 -113392618 - MIR SINE MIR -2 260 7 29 47 0 0 chr3 114132223 114132266 -113392312 + AT_rich Low_complexity Low_complexity 1 43 0 193 266 25 51 chr3 114132346 114132425 -113392153 + L2 LINE L2 3173 3249 -23 338 217 43 0 chr3 114133700 114133769 -113390809 + L2 LINE L2 3200 3271 -1 25 0 0 0 chr3 114134945 114134970 -113389608 + AT_rich Low_complexity Low_complexity 1 25 0 365 169 70 0 chr3 114135401 114135472 -113389106 + L1MA5A LINE L1 67 142 -6707 * 13910 176 23 22 chr3 114135448 114139216 -113385362 + L1MA5A LINE L1 2719 6491 -508 2277 158 55 74 chr3 114139216 114139838 -113384740 + LTR38B LTR ERV1 1 610 0 13910 176 23 22 chr3 114139838 114139954 -113384624 + L1MA5A LINE L1 6491 6605 -394 1180 172 150 17 chr3 114139954 114140244 -113384334 + MER58B DNA MER1_type 17 341 0 21 36 0 0 chr3 114140607 114140635 -113383943 + AT_rich Low_complexity Low_complexity 1 28 0 336 273 156 8 chr3 114140873 114141001 -113383577 - MIR SINE MIR -21 241 95 241 282 28 0 chr3 114141092 114141163 -113383415 - MIR SINE MIR -167 95 23 501 264 118 17 chr3 114141348 114141481 -113383097 + MIR SINE MIR 67 224 -38 186 43 0 0 chr3 114141481 114141504 -113383074 + (TA)n Simple_repeat Simple_repeat 2 24 0 501 264 118 17 chr3 114141504 114141548 -113383030 + MIR SINE MIR 224 262 0 487 265 104 35 chr3 114141642 114141872 -113382706 + MIR SINE MIR 3 248 -14 2125 103 3 23 chr3 114142787 114143088 -113381490 - AluSx SINE Alu 0 312 18 1903 46 29 8 chr3 114143429 114143670 -113380908 + AluY SINE Alu 44 289 -22 538 325 108 21 chr3 114144305 114144545 -113380033 - MIR SINE MIR 0 262 2 246 299 124 29 chr3 114144642 114144779 -113379799 + MIR3 SINE MIR 13 162 -46 384 59 0 0 chr3 114144961 114145012 -113379566 + (CA)n Simple_repeat Simple_repeat 2 52 0 298 162 27 81 chr3 114146649 114146723 -113377855 - L2 LINE L2 0 3272 3203 2086 120 30 0 chr3 114146784 114147084 -113377494 + AluSx SINE Alu 1 309 -3 217 200 123 0 chr3 114147659 114147724 -113376854 - L2 LINE L2 0 3313 3241 383 254 154 0 chr3 114148806 114148916 -113375662 - L2 LINE L2 -7 3306 3180 446 191 19 9 chr3 114149092 114149197 -113375381 + L1MC5 LINE L1 7340 7445 -516 23 0 0 0 chr3 114149361 114149384 -113375194 + AT_rich Low_complexity Low_complexity 1 23 0 24 67 0 0 chr3 114149721 114149766 -113374812 + AT_rich Low_complexity Low_complexity 1 45 0 849 216 70 0 chr3 114149923 114150108 -113374470 - MER3 DNA MER1_type -6 203 6 467 273 8 8 chr3 114150118 114150239 -113374339 + L2 LINE L2 3193 3313 0 276 302 53 47 chr3 114150238 114150407 -113374171 - L2 LINE L2 -33 3280 3111 * 2138 117 0 0 chr3 114150821 114151123 -113373455 + AluSx SINE Alu 1 302 0 319 282 0 0 chr3 114151920 114151991 -113372587 - MIR SINE MIR -55 153 83 759 277 37 12 chr3 114152039 114152281 -113372297 - MIR SINE MIR 0 262 15 344 339 17 20 chr3 114153246 114153431 -113371147 + MIR SINE MIR 35 216 -46 2227 88 7 10 chr3 114153532 114153827 -113370751 + AluSx SINE Alu 1 294 -18 225 385 0 0 chr3 114153992 114154070 -113370508 - L2 LINE L2 -2 3311 3234 239 352 24 0 chr3 114154171 114154296 -113370282 - L2 LINE L2 -1618 1696 1569 1399 209 134 43 chr3 114154456 114154919 -113369659 + MLT1D LTR MaLR 1 505 0 23 0 0 0 chr3 114154955 114154978 -113369600 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr3 114155277 114155312 -113369266 + AT_rich Low_complexity Low_complexity 1 35 0 2126 101 3 24 chr3 114155891 114156189 -113368389 - AluSx SINE Alu -15 297 6 21 36 0 0 chr3 114156519 114156547 -113368031 + AT_rich Low_complexity Low_complexity 1 28 0 1467 257 63 5 chr3 114156764 114157142 -113367436 - L2 LINE L2 -614 2700 2301 304 326 89 22 chr3 114157159 114157294 -113367284 - MIR3 SINE MIR -54 154 11 25 31 0 0 chr3 114158632 114158664 -113365914 + AT_rich Low_complexity Low_complexity 1 32 0 482 136 0 0 chr3 114158664 114158745 -113365833 - L1PB4 LINE L1 -7 6149 6069 743 266 16 16 chr3 114158908 114159096 -113365482 + MIR SINE MIR 75 262 0 4808 121 108 1 chr3 114160135 114161687 -113362891 + L1PA16 LINE L1 4517 6156 -10 475 253 130 13 chr3 114162208 114162362 -113362216 + MIR SINE MIR 81 252 -10 353 340 186 17 chr3 114162441 114162915 -113361663 - L2 LINE L2 -431 2883 2330 240 283 0 0 chr3 114162941 114162994 -113361584 + MIR3 SINE MIR 137 189 -19 1827 150 3 32 chr3 114163088 114163402 -113361176 + AluJo SINE Alu 1 305 -7 375 280 61 45 chr3 114164924 114165056 -113359522 + MIR SINE MIR 19 152 -56 182 276 0 0 chr3 114165095 114165153 -113359425 + L2 LINE L2 2151 2208 -1106 10884 140 28 5 chr3 114165157 114166928 -113357650 - Tigger1 DNA MER2_type 0 2418 603 194 33 67 0 chr3 114166928 114166958 -113357620 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 26870 133 18 13 chr3 114166968 114169764 -113354814 - L1PA8 LINE L1 -26 6461 3680 2276 56 3 25 chr3 114169764 114170075 -113354503 - AluY SINE Alu 0 305 1 26870 133 18 13 chr3 114170075 114172457 -113352121 - L1PA8 LINE L1 -2807 3680 1189 180 77 0 0 chr3 114172457 114172483 -113352095 + (TTG)n Simple_repeat Simple_repeat 2 27 0 26870 133 18 13 chr3 114172483 114173677 -113350901 - L1PA8 LINE L1 -5298 1189 2 3751 144 2 39 chr3 114173677 114174315 -113350263 - Tigger1 DNA MER2_type -1804 614 1 377 324 131 50 chr3 114174329 114175035 -113349543 + L2 LINE L2 2225 3038 -234 315 352 92 5 chr3 114175393 114175589 -113348989 + MIR SINE MIR 48 260 -2 23 68 0 0 chr3 114175857 114175901 -113348677 + AT_rich Low_complexity Low_complexity 1 44 0 247 330 44 22 chr3 114176120 114176211 -113348367 - L2 LINE L2 -62 3210 3118 3891 138 35 0 chr3 114177880 114178534 -113346044 + L1MC2 LINE L1 5660 6336 -8 183 80 0 0 chr3 114178547 114178572 -113346006 + (CATA)n Simple_repeat Simple_repeat 2 26 0 291 320 21 10 chr3 114178912 114179009 -113345569 + MIR SINE MIR 38 135 -73 2028 234 87 20 chr3 114179547 114180220 -113344358 + L1ME2 LINE L1 4921 5547 -617 2150 167 8 13 chr3 114180220 114180597 -113343981 - THE1C LTR MaLR 0 375 1 9805 104 38 32 chr3 114180597 114182169 -113342409 - THE1C-int LTR MaLR 0 1580 1 1864 136 30 83 chr3 114182169 114182565 -113342013 - THE1C LTR MaLR 0 375 1 2028 234 87 20 chr3 114182565 114183039 -113341539 + L1ME2 LINE L1 5546 6151 -13 237 310 49 49 chr3 114183080 114183154 -113341424 + L1MC4 LINE L1 7832 7905 -137 1937 152 16 10 chr3 114183154 114183464 -113341114 + AluJb SINE Alu 1 312 0 237 310 49 49 chr3 114183464 114183573 -113341005 + L1MC4 LINE L1 7904 8015 -27 636 234 73 36 chr3 114183890 114184082 -113340496 + L1MB8 LINE L1 4 202 -6657 * 4691 210 73 19 chr3 114184081 114186002 -113338576 + L1MB8 LINE L1 4940 6988 -1 1097 229 39 7 chr3 114186617 114186927 -113337651 + L1M4 LINE L1 4139 4458 -1688 285 333 0 0 chr3 114187037 114187121 -113337457 - MIR SINE MIR -105 157 74 598 115 0 39 chr3 114187162 114187266 -113337312 - MER53 DNA DNA -88 101 2 514 156 0 0 chr3 114187630 114187720 -113336858 + L1ME1 LINE L1 4455 4544 -1602 1548 177 64 0 chr3 114187720 114188002 -113336576 + Tigger4(Zombi) DNA MER2_type 2 301 -2430 3413 148 16 0 chr3 114188002 114188569 -113336009 + Tigger4(Zombi) DNA MER2_type 2156 2731 0 2668 225 71 28 chr3 114188569 114190116 -113334462 + L1ME1 LINE L1 4545 6161 -5 1112 133 0 0 chr3 114190843 114191042 -113333536 + AluSg/x SINE Alu 127 325 0 266 102 61 0 chr3 114191467 114191516 -113333062 + L2 LINE L2 3262 3313 0 23 78 0 0 chr3 114191862 114191913 -113332665 + AT_rich Low_complexity Low_complexity 1 51 0 389 198 73 113 chr3 114193747 114193924 -113330654 + MIR SINE MIR 89 258 -4 369 289 93 52 chr3 114194595 114194789 -113329789 + MIR SINE MIR 10 211 -51 319 314 157 0 chr3 114195777 114195917 -113328661 - L2 LINE L2 0 3272 3111 339 25 0 0 chr3 114196751 114196791 -113327787 + (CA)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr3 114197408 114197429 -113327149 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 114197865 114197886 -113326692 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 114198296 114198318 -113326260 + AT_rich Low_complexity Low_complexity 1 22 0 29 28 0 0 chr3 114198534 114198570 -113326008 + AT_rich Low_complexity Low_complexity 1 36 0 345 132 88 11 chr3 114199017 114199108 -113325470 - L1MB7 LINE L1 0 6184 6087 490 274 111 38 chr3 114199561 114200010 -113324568 - L1MEc LINE L1 -5039 1357 876 2629 80 19 19 chr3 114200069 114200444 -113324134 + THE1C LTR MaLR 1 375 0 422 280 49 0 chr3 114201979 114202122 -113322456 + MER103 DNA DNA 15 164 -2 1955 125 6 52 chr3 114202498 114202825 -113321753 + AluSx SINE Alu 1 312 0 422 144 10 96 chr3 114203980 114204040 -113320538 + L1MA8 LINE L1 6187 6236 -55 1482 194 42 10 chr3 114204040 114204329 -113320249 + AluJo SINE Alu 1 298 -14 422 144 10 96 chr3 114204329 114204372 -113320206 + L1MA8 LINE L1 6236 6281 -10 198 0 0 0 chr3 114204407 114204429 -113320149 + (TAA)n Simple_repeat Simple_repeat 2 23 0 29 28 0 0 chr3 114205310 114205346 -113319232 + AT_rich Low_complexity Low_complexity 1 36 0 26 0 0 0 chr3 114205489 114205515 -113319063 + AT_rich Low_complexity Low_complexity 1 26 0 1187 191 99 26 chr3 114206115 114206388 -113318190 + AluJo SINE Alu 1 293 -9 2112 133 6 18 chr3 114206702 114207041 -113317537 - MER1B DNA MER1_type 0 337 3 451 241 44 36 chr3 114207809 114207946 -113316632 - L2 LINE L2 -17 3296 3159 258 429 6 19 chr3 114208009 114208170 -113316408 - L2 LINE L2 -385 2929 2771 286 264 43 31 chr3 114209276 114209398 -113315180 + MIR SINE MIR 30 148 -62 771 262 146 50 chr3 114209775 114210153 -113314425 - LTR33A LTR ERVL -2 521 108 285 266 11 130 chr3 114210685 114210726 -113313852 - L2 LINE L2 0 3313 3269 2302 92 0 10 chr3 114210726 114211031 -113313547 + AluSc SINE Alu 1 302 -7 285 266 11 130 chr3 114211031 114211173 -113313405 - L2 LINE L2 -44 3269 3152 1677 210 136 3 chr3 114211406 114212041 -113312537 + L1MEc LINE L1 331 1082 -5314 1926 92 11 0 chr3 114212328 114212588 -113311990 + AluSq SINE Alu 37 299 -14 1827 95 12 0 chr3 114212737 114212989 -113311589 + AluSq SINE Alu 44 298 -15 1852 193 166 32 chr3 114215693 114215931 -113308647 - L1MD3 LINE L1 -19 7976 7771 2162 93 10 7 chr3 114215931 114216221 -113308357 - AluSc SINE Alu -18 291 1 1852 193 166 32 chr3 114216221 114216850 -113307728 - L1MD3 LINE L1 -224 7771 6846 192 116 209 0 chr3 114217456 114217499 -113307079 + L2 LINE L2 3262 3313 0 719 192 0 0 chr3 114218115 114218284 -113306294 + FLAM_C SINE Alu 1 169 0 2414 169 12 49 chr3 114218286 114218853 -113305725 - L1 LINE L1 -1310 4836 4291 6290 118 22 6 chr3 114218885 114220165 -113304413 + L1PB1 LINE L1 4854 6151 0 284 51 13 77 chr3 114220199 114220277 -113304301 + (GGA)n Simple_repeat Simple_repeat 3 75 0 930 203 0 0 chr3 114220328 114220491 -113304087 + FRAM SINE Alu 1 163 -13 2506 62 0 0 chr3 114220693 114221000 -113303578 + AluY SINE Alu 1 307 -4 433 237 130 83 chr3 114222224 114222393 -113302185 + MER5A DNA MER1_type 9 185 -4 889 54 0 0 chr3 114222691 114222803 -113301775 - L1PA4 LINE L1 -187 5968 5857 1220 21 0 0 chr3 114222803 114222942 -113301636 + L1PA4 LINE L1 6007 6147 -8 623 228 49 90 chr3 114223056 114223402 -113301176 + MLT1J LTR MaLR 1 331 -180 194 328 56 72 chr3 114226171 114226296 -113298282 + MIR SINE MIR 2 124 -138 307 304 0 0 chr3 114227099 114227178 -113297400 + L2 LINE L2 3194 3272 0 5246 177 21 6 chr3 114227513 114229299 -113295279 - L1PA14 LINE L1 -3 6158 4316 2191 111 0 0 chr3 114230255 114230544 -113294034 - AluSx SINE Alu -16 296 8 2094 143 0 0 chr3 114231879 114232180 -113292398 - AluSq SINE Alu -7 306 6 1153 158 0 50 chr3 114232523 114232626 -113291952 - L1PA14 LINE L1 -1815 4331 4243 188 35 35 0 chr3 114232626 114232655 -113291923 + (TA)n Simple_repeat Simple_repeat 1 30 0 1153 158 0 50 chr3 114232655 114232773 -113291805 - L1PA14 LINE L1 -1903 4243 4121 29 0 0 0 chr3 114233154 114233183 -113291395 + AT_rich Low_complexity Low_complexity 1 29 0 283 371 13 72 chr3 114233558 114233795 -113290783 + L2 LINE L2 3003 3225 -47 207 388 8 50 chr3 114234039 114234160 -113290418 - L2 LINE L2 -188 3084 2969 1871 132 0 52 chr3 114234172 114234482 -113290096 + AluSx SINE Alu 1 294 -18 518 263 37 21 chr3 114235479 114235669 -113288909 - MIR SINE MIR -56 206 14 933 174 51 15 chr3 114235724 114235920 -113288658 - L1PA16 LINE L1 -16 6150 5948 763 165 0 63 chr3 114237184 114237342 -113287236 + AluJo SINE Alu 1 148 -164 875 118 15 0 chr3 114237458 114237594 -113286984 + AluSg/x SINE Alu 169 306 -4 23 68 0 0 chr3 114239065 114239109 -113285469 + AT_rich Low_complexity Low_complexity 1 44 0 3078 48 2 18 chr3 114240277 114240673 -113283905 + L1PA5 LINE L1 5765 6154 0 1121 191 174 3 chr3 114242319 114242613 -113281965 + MER2 DNA MER2_type 1 344 0 1768 154 6 47 chr3 114242936 114243255 -113281323 + AluJb SINE Alu 1 306 -6 22 0 0 0 chr3 114243708 114243730 -113280848 + AT_rich Low_complexity Low_complexity 1 22 0 36 53 0 0 chr3 114243847 114243904 -113280674 + AT_rich Low_complexity Low_complexity 1 57 0 229 157 112 34 chr3 114244800 114244889 -113279689 + L1MC5 LINE L1 7829 7924 -37 253 194 75 0 chr3 114245686 114245753 -113278825 + L1MB4 LINE L1 4585 4656 -1490 3688 171 42 47 chr3 114246001 114246402 -113278176 + L1MB4 LINE L1 4759 5160 -1020 1391 183 19 68 chr3 114246402 114246725 -113277853 + AluJo SINE Alu 1 307 -5 3688 171 42 47 chr3 114246725 114247189 -113277389 + L1MB4 LINE L1 5160 5613 -567 2484 74 3 0 chr3 114247189 114247499 -113277079 + AluSp SINE Alu 1 311 -2 3688 171 42 47 chr3 114247499 114247971 -113276607 + L1MB4 LINE L1 5613 6086 -94 1876 142 6 15 chr3 114247971 114248308 -113276270 + L1MB3 LINE L1 5842 6175 -8 2181 23 8 0 chr3 114248462 114248721 -113275857 + L1PA4 LINE L1 5893 6153 -2 6445 165 58 77 chr3 114249110 114249832 -113274746 + L1MCa LINE L1 28 762 -5664 867 101 78 0 chr3 114249832 114249961 -113274617 + MER85 DNA T2_type 1 139 0 6445 165 58 77 chr3 114249961 114250859 -113273719 + L1MCa LINE L1 762 1617 -4809 4660 170 55 6 chr3 114250869 114252213 -113272365 + L1MB3 LINE L1 4699 6106 -77 27 29 0 0 chr3 114252289 114252323 -113272255 + AT_rich Low_complexity Low_complexity 1 34 0 864 158 105 0 chr3 114252427 114252579 -113271999 + FAM SINE Alu 4 171 -4 470 260 75 92 chr3 114252695 114253110 -113271468 + L1ME3A LINE L1 5652 6059 -111 284 229 0 104 chr3 114253206 114253302 -113271276 + MIR SINE MIR 102 187 -75 1670 191 0 23 chr3 114254097 114254406 -113270172 - AluJo SINE Alu -6 306 5 1131 168 111 12 chr3 114254979 114255223 -113269355 + MSTB LTR MaLR 8 275 -151 * 6572 188 142 26 chr3 114255215 114256754 -113267824 + MER52A LTR ERV1 39 1755 0 861 154 58 6 chr3 114256755 114256911 -113267667 + MSTB LTR MaLR 265 428 0 183 80 0 0 chr3 114257066 114257091 -113267487 + (TG)n Simple_repeat Simple_repeat 2 26 0 2030 292 26 44 chr3 114257210 114257976 -113266602 + L1M3b LINE L1 601 1352 -4929 3899 257 103 59 chr3 114258006 114259641 -113264937 + L1M2b LINE L1 1 1707 -5502 * 12550 179 35 84 chr3 114259631 114261062 -113263516 + L1M2 LINE L1 787 2286 -4584 763 150 0 29 chr3 114261062 114261202 -113263376 - FRAM SINE Alu 0 40 1 12550 179 35 84 chr3 114261202 114261878 -113262700 + L1M2 LINE L1 2286 2993 -3877 2394 108 0 0 chr3 114261878 114262185 -113262393 + AluSx SINE Alu 1 307 -5 12550 179 35 84 chr3 114262185 114264769 -113259809 + L1M2 LINE L1 2993 5472 -1398 890 191 12 18 chr3 114264769 114264937 -113259641 + AluJo SINE Alu 126 292 -20 12550 179 35 84 chr3 114264937 114265563 -113259015 + L1M2 LINE L1 5472 6127 -743 876 213 36 52 chr3 114265563 114265812 -113258766 - MSTB2 LTR MaLR 0 457 213 3718 131 47 12 chr3 114265812 114266454 -113258124 - L1MA4A LINE L1 -47 6256 5593 1170 37 0 0 chr3 114266462 114266597 -113257981 - AluY SINE Alu -16 295 161 3681 162 27 10 chr3 114266641 114267591 -113256987 - L1MA4A LINE L1 -694 5609 4639 580 310 111 0 chr3 114267837 114268053 -113256525 - MIR SINE MIR 0 262 23 230 390 76 0 chr3 114268650 114268768 -113255810 - L2 LINE L2 -47 3225 3099 2246 110 3 0 chr3 114268789 114269088 -113255490 - AluSq SINE Alu -13 300 1 1693 174 7 4 chr3 114269092 114269367 -113255211 - AluJo SINE Alu -25 287 12 189 312 52 13 chr3 114270047 114270124 -113254454 - L2 LINE L2 -3 3310 3231 2239 87 0 3 chr3 114270124 114270413 -113254165 + AluY SINE Alu 1 288 -23 23 0 0 0 chr3 114270760 114270783 -113253795 + AT_rich Low_complexity Low_complexity 1 23 0 1581 180 4 0 chr3 114271616 114271872 -113252706 - AluJo SINE Alu -55 257 1 7569 120 25 158 chr3 114272269 114272759 -113251819 + Tigger1 DNA MER2_type 4 558 -1860 1490 181 29 36 chr3 114272759 114273068 -113251510 + AluJo SINE Alu 1 307 -5 7569 120 25 158 chr3 114273068 114273193 -113251385 + Tigger1 DNA MER2_type 558 698 -1720 2205 128 0 0 chr3 114273193 114273505 -113251073 + AluSx SINE Alu 1 312 0 7569 120 25 158 chr3 114273505 114273732 -113250846 + Tigger1 DNA MER2_type 698 954 -1464 1139 167 0 81 chr3 114273732 114273966 -113250612 + AluJb SINE Alu 86 300 -12 7569 120 25 158 chr3 114273966 114274288 -113250290 + Tigger1 DNA MER2_type 954 1109 -1309 2127 99 27 3 chr3 114274288 114274582 -113249996 + AluSx SINE Alu 1 301 -11 7569 120 25 158 chr3 114274582 114274993 -113249585 + Tigger1 DNA MER2_type 1109 1573 -845 1021 155 21 5 chr3 114275060 114275247 -113249331 - Tigger1 DNA MER2_type -3 2415 2226 319 312 36 29 chr3 114275303 114275441 -113249137 - MIR3 SINE MIR -12 196 58 5970 181 3 7 chr3 114275603 114276764 -113247814 + L1P LINE L1 4228 5384 -762 516 207 32 75 chr3 114276774 114276962 -113247616 + MLT1B LTR MaLR 143 322 -68 617 264 28 9 chr3 114276965 114277177 -113247401 + L1P5 LINE L1 1 216 -6647 * 8092 112 27 13 chr3 114277155 114277915 -113246663 + L1P5 LINE L1 1393 2180 -4683 5126 46 3 0 chr3 114277915 114278541 -113246037 + L1PA5 LINE L1 5527 6154 0 8092 112 27 13 chr3 114278541 114279085 -113245493 + L1P5 LINE L1 2180 2715 -4148 * 10891 193 13 4 chr3 114279078 114282511 -113242067 + L1P5 LINE L1 3040 6501 -366 2040 128 7 0 chr3 114282511 114282836 -113241742 + AluSx SINE Alu 1 327 0 199 274 39 20 chr3 114282861 114282912 -113241666 - MIR3 SINE MIR -52 156 105 889 269 24 40 chr3 114282926 114283179 -113241399 + MIR SINE MIR 2 250 -12 23 0 0 0 chr3 114283751 114283774 -113240804 + AT_rich Low_complexity Low_complexity 1 23 0 292 337 163 24 chr3 114285427 114285673 -113238905 - L2 LINE L2 -1 3312 3033 394 410 25 18 chr3 114285814 114286092 -113238486 - L2 LINE L2 -482 2832 2553 339 324 98 17 chr3 114287910 114288083 -113236495 - L2 LINE L2 -803 2511 2325 200 193 53 0 chr3 114289174 114289231 -113235347 + (CATATA)n Simple_repeat Simple_repeat 6 65 0 233 179 54 18 chr3 114290454 114290510 -113234068 + L3 LINE CR1 1165 1222 -355 24 0 0 0 chr3 114290781 114290805 -113233773 + AT_rich Low_complexity Low_complexity 1 24 0 322 306 128 28 chr3 114290828 114291008 -113233570 - L2 LINE L2 -4 3309 3112 190 331 63 63 chr3 114291201 114291376 -113233202 - L2 LINE L2 -480 2834 2660 669 263 82 41 chr3 114291733 114291976 -113232602 - MIR SINE MIR -8 254 2 2498 48 0 3 chr3 114292032 114292325 -113232253 + AluY SINE Alu 1 292 -19 1436 228 26 93 chr3 114292514 114293173 -113231405 + L1MC4 LINE L1 7298 7912 -130 2257 98 8 64 chr3 114293919 114294276 -113230302 + MER1B DNA MER1_type 1 337 0 349 216 57 0 chr3 114295051 114295139 -113229439 + L1M LINE L1 5314 5406 -760 1415 169 28 36 chr3 114295166 114295522 -113229056 + L1ME LINE L1 5315 5667 -497 11653 193 24 19 chr3 114295536 114296772 -113227806 + L1PA13 LINE L1 6 1235 -5562 1666 161 97 32 chr3 114296772 114297114 -113227464 + THE1B LTR MaLR 1 364 0 11653 193 24 19 chr3 114297114 114298430 -113226148 + L1PA13 LINE L1 1235 2559 -4238 2027 131 0 7 chr3 114298430 114298728 -113225850 - AluSx SINE Alu -16 296 1 11653 193 24 19 chr3 114298728 114298926 -113225652 + L1PA13 LINE L1 2559 2755 -4042 1439 161 24 20 chr3 114298926 114299153 -113225425 + L1PA13 LINE L1 4274 4504 -2293 1903 162 0 3 chr3 114299153 114299456 -113225122 + AluSx SINE Alu 1 302 -10 1439 161 24 20 chr3 114299456 114299520 -113225058 + L1PA13 LINE L1 4504 4566 -2231 22288 77 8 7 chr3 114299643 114303507 -113221071 - L1PA7 LINE L1 0 6154 2285 1803 74 0 13 chr3 114303507 114303738 -113220840 + AluSc SINE Alu 60 287 -22 5342 186 37 0 chr3 114303864 114304853 -113219725 + L1MA1 LINE L1 1081 2106 -5459 3294 155 37 18 chr3 114304852 114305823 -113218755 + L1MA1 LINE L1 3036 4030 -3535 * 252 0 0 0 chr3 114305823 114305851 -113218727 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 3294 155 37 18 chr3 114305851 114305968 -113218610 + L1MA1 LINE L1 4030 4143 -3422 3724 146 14 14 chr3 114306072 114309125 -113215453 + L1MA1 LINE L1 4603 7715 -6 1101 123 21 37 chr3 114309145 114309332 -113215246 + AluJo SINE Alu 113 296 -16 3334 207 53 19 chr3 114309334 114310209 -113214369 + L1MB3 LINE L1 5279 6182 -1 296 226 0 0 chr3 114310363 114310425 -113214153 + L1M4 LINE L1 3524 3585 -2561 21 36 0 0 chr3 114310425 114310453 -113214125 + GC_rich Low_complexity Low_complexity 1 28 0 2181 98 65 18 chr3 114310504 114310890 -113213688 + SVA Other Other 393 796 -590 1060 29 0 18 chr3 114310993 114311163 -113213415 + SVA Other Other 700 866 -520 6433 59 5 56 chr3 114311182 114312368 -113212210 + SVA Other Other 433 1386 0 812 271 94 19 chr3 114312369 114312783 -113211795 + L1M4 LINE L1 3566 4010 -2136 321 370 87 40 chr3 114312789 114312962 -113211616 + L1M2 LINE L1 837 1017 -5832 2835 228 55 97 chr3 114312962 114314019 -113210559 + L1M4 LINE L1 1154 2150 -5059 1899 158 3 38 chr3 114314019 114314366 -113210212 - MER1B DNA MER1_type 0 337 3 2835 228 55 97 chr3 114314366 114314753 -113209825 + L1M4 LINE L1 2150 2552 -4657 * 7104 33 8 1 chr3 114314748 114315660 -113208918 - L1PA3 LINE L1 -1018 5128 4211 7723 23 0 0 chr3 114315660 114316678 -113207900 + L1PA3 LINE L1 5136 6154 -1 3046 218 58 19 chr3 114316697 114317733 -113206845 + L1M4 LINE L1 2543 3687 -3521 2208 140 112 5 chr3 114317733 114318118 -113206460 + MSTA LTR MaLR 3 428 0 3046 218 58 19 chr3 114318118 114318928 -113205650 + L1M4 LINE L1 3687 4464 -2744 1561 201 14 3 chr3 114318938 114319231 -113205347 + AluJo SINE Alu 3 298 -14 3477 203 40 20 chr3 114319235 114320244 -113204334 + L1M4 LINE L1 5414 6442 -766 1229 91 6 0 chr3 114320243 114320419 -113204159 - L1P2 LINE L1 -5261 885 709 * 34401 38 4 1 chr3 114320416 114325318 -113199260 + L1P2 LINE L1 904 5820 -335 1501 196 62 0 chr3 114325440 114325705 -113198873 + AluJo SINE Alu 1 285 -27 492 111 0 0 chr3 114325705 114325786 -113198792 + (TA)n Simple_repeat Simple_repeat 2 82 0 243 333 21 0 chr3 114325802 114325895 -113198683 + L1MDa LINE L1 1 95 -6445 439 272 43 72 chr3 114325980 114326151 -113198427 + L1MDa LINE L1 1031 1205 -5338 2145 99 3 3 chr3 114326151 114326481 -113198097 - AluSq SINE Alu 0 330 1 439 272 43 72 chr3 114326481 114326655 -113197923 + L1MDa LINE L1 1205 1364 -5179 3439 122 21 19 chr3 114326655 114327181 -113197397 + MER1A DNA MER1_type 1 527 0 439 272 43 72 chr3 114327181 114327278 -113197300 + L1MDa LINE L1 1364 1462 -5081 4241 251 86 15 chr3 114327357 114329066 -113195512 + L1M2b LINE L1 1260 3100 -4109 20113 112 9 31 chr3 114329073 114331899 -113192679 + L1P LINE L1 11 2760 -3386 2877 19 0 0 chr3 114331899 114332212 -113192366 + AluYb8 SINE Alu 1 313 -5 20113 112 9 31 chr3 114332212 114332613 -113191965 + L1P LINE L1 2760 3168 -2978 13399 57 6 10 chr3 114332621 114335027 -113189551 + L1PA4 LINE L1 3750 6155 0 3146 160 66 87 chr3 114335027 114335375 -113189203 + L1MB7 LINE L1 5363 5717 -467 1941 163 3 0 chr3 114335375 114335682 -113188896 + AluJb SINE Alu 5 312 0 3146 160 66 87 chr3 114335682 114336171 -113188407 + L1MB7 LINE L1 5717 6184 0 324 295 101 16 chr3 114336440 114336569 -113188009 + MIR SINE MIR 117 256 -6 27 49 0 0 chr3 114337901 114337942 -113186636 + AT_rich Low_complexity Low_complexity 1 41 0 829 152 0 0 chr3 114337943 114338068 -113186510 - AluJb SINE Alu -187 125 1 396 0 0 0 chr3 114338083 114338127 -113186451 + (TTTTG)n Simple_repeat Simple_repeat 2 45 0 611 135 52 0 chr3 114339671 114339767 -113184811 + HY3 scRNA scRNA 1 101 0 280 345 0 25 chr3 114339930 114340049 -113184529 - MIR3 SINE MIR -6 202 87 21 36 0 0 chr3 114340199 114340227 -113184351 + AT_rich Low_complexity Low_complexity 1 28 0 353 266 18 37 chr3 114340687 114340796 -113183782 + MIR SINE MIR 83 189 -73 302 215 32 0 chr3 114340861 114340937 -113183641 + L1M3 LINE L1 5664 5743 -416 * 3643 222 36 46 chr3 114340928 114341956 -113182622 + L1M4 LINE L1 4244 5254 -920 854 185 0 0 chr3 114341956 114342086 -113182492 + FLAM_C SINE Alu 1 130 -3 3643 222 36 46 chr3 114342086 114342266 -113182312 + L1M4 LINE L1 5254 5434 -740 799 153 7 170 chr3 114342261 114342549 -113182029 + L1MB5 LINE L1 4428 4668 -1478 * 3009 175 30 89 chr3 114342547 114343343 -113181235 + L1MB5 LINE L1 5417 6165 -9 2323 96 3 0 chr3 114343410 114343712 -113180866 + AluSp SINE Alu 10 312 -1 2180 124 0 0 chr3 114343727 114344026 -113180552 + AluSx SINE Alu 1 299 -13 569 195 62 66 chr3 114344027 114344225 -113180353 + L1M4 LINE L1 5111 5309 -837 1516 193 62 0 chr3 114344225 114344490 -113180088 + AluJo SINE Alu 1 285 -27 492 111 0 0 chr3 114344490 114344571 -113180007 + (TA)n Simple_repeat Simple_repeat 1 81 0 569 195 62 66 chr3 114344580 114344607 -113179971 + L1M4 LINE L1 5309 5335 -811 272 333 21 0 chr3 114344587 114344680 -113179898 + L1MDa LINE L1 1 95 -6445 * 608 270 43 72 chr3 114344765 114344936 -113179642 + L1MDa LINE L1 1031 1205 -5338 2114 99 3 7 chr3 114344936 114345267 -113179311 - AluSq SINE Alu 0 330 1 608 270 43 72 chr3 114345267 114345441 -113179137 + L1MDa LINE L1 1205 1364 -5179 3684 122 21 19 chr3 114345441 114345967 -113178611 + MER1A DNA MER1_type 1 527 0 608 270 43 72 chr3 114345967 114346064 -113178514 + L1MDa LINE L1 1364 1462 -5081 4804 252 86 14 chr3 114346143 114347852 -113176726 + L1MA4A LINE L1 1260 3100 -4109 17902 118 10 31 chr3 114347859 114350684 -113173894 + L1P LINE L1 11 2776 -3370 2552 44 0 3 chr3 114350685 114350981 -113173597 + AluY SINE Alu 1 295 -16 291 54 0 0 chr3 114352191 114352228 -113172350 + (T)n Simple_repeat Simple_repeat 1 37 0 195 42 0 0 chr3 114352438 114352462 -113172116 + (CGGGGG)n Simple_repeat Simple_repeat 6 29 0 2482 57 0 16 chr3 114353317 114353633 -113170945 + AluY SINE Alu 1 311 0 210 204 0 20 chr3 114353836 114353885 -113170693 + (TA)n Simple_repeat Simple_repeat 2 49 0 2188 106 31 0 chr3 114354573 114354866 -113169712 - AluSx SINE Alu -10 302 1 344 216 34 34 chr3 114355075 114355163 -113169415 - MLT1K LTR MaLR -8 580 493 275 320 194 19 chr3 114355454 114355660 -113168918 - MIR SINE MIR -4 258 17 1099 32 0 0 chr3 114355945 114356070 -113168508 + AluYb8 SINE Alu 189 313 -5 2981 72 0 0 chr3 114356070 114356471 -113168107 + L1PA6 LINE L1 2768 3168 -2978 13399 57 6 3 chr3 114356479 114358871 -113165707 + L1PA6 LINE L1 3750 6147 -7 11649 173 42 78 chr3 114358878 114358973 -113165605 + L1MA4A LINE L1 3069 3166 -4199 7525 166 47 5 chr3 114358973 114361062 -113163516 - L1PA13 LINE L1 -4 6159 3985 11649 173 42 78 chr3 114361062 114361350 -113163228 + L1MA4A LINE L1 3166 3463 -3902 4422 102 24 0 chr3 114361350 114361936 -113162642 + L1PA11 LINE L1 5572 6173 -1 11649 173 42 78 chr3 114361936 114362316 -113162262 + L1MA4A LINE L1 3463 3855 -3510 7582 55 6 0 chr3 114362316 114363418 -113161160 - L1PA7 LINE L1 0 6154 5051 11649 173 42 78 chr3 114363418 114363784 -113160794 + L1MA4A LINE L1 3855 4233 -3132 2176 133 0 19 chr3 114363784 114364101 -113160477 + AluSx SINE Alu 1 311 -1 11649 173 42 78 chr3 114364101 114364452 -113160126 + L1MA4A LINE L1 4233 4595 -2770 1403 199 17 37 chr3 114364452 114364749 -113159829 + AluJo SINE Alu 1 291 -21 11649 173 42 78 chr3 114364749 114365548 -113159030 + L1MA4A LINE L1 4595 5421 -1944 1420 134 93 65 chr3 114365548 114365838 -113158740 + AluJo SINE Alu 1 298 -14 11649 173 42 78 chr3 114365838 114365906 -113158672 + L1MA4A LINE L1 5421 5490 -1875 793 156 39 0 chr3 114365906 114366034 -113158544 + AluSg/x SINE Alu 164 296 -14 11649 173 42 78 chr3 114366034 114367993 -113156585 + L1MA4A LINE L1 5490 7344 -21 237 152 152 0 chr3 114368005 114368051 -113156527 + L1M4 LINE L1 4164 4216 -1930 26 30 0 0 chr3 114368121 114368154 -113156424 + GC_rich Low_complexity Low_complexity 1 33 0 237 288 14 0 chr3 114368529 114368602 -113155976 + MIR3 SINE MIR 120 193 -15 1173 206 111 58 chr3 114368622 114368656 -113155922 + MER34B LTR ERV1 1 32 -533 2248 107 7 0 chr3 114368656 114368954 -113155624 - AluSq SINE Alu -13 300 1 1173 206 111 58 chr3 114368954 114369404 -113155174 + MER34B LTR ERV1 32 565 0 1194 271 143 22 chr3 114369726 114370173 -113154405 - L2 LINE L2 -8 3305 2805 517 234 87 29 chr3 114370197 114370368 -113154210 - L2 LINE L2 -343 2929 2745 3096 164 106 22 chr3 114370372 114370993 -113153585 - L1MCa LINE L1 -5734 692 20 2294 98 0 3 chr3 114371084 114371380 -113153198 + AluSx SINE Alu 2 296 -16 1200 169 0 11 chr3 114371522 114371711 -113152867 + AluJo SINE Alu 1 187 -125 517 202 0 0 chr3 114371757 114371841 -113152737 + AluJb SINE Alu 199 282 -30 1956 125 32 4 chr3 114372055 114372336 -113152242 + AluSx SINE Alu 6 294 -18 3011 168 36 16 chr3 114372798 114373346 -113151232 - MER89 LTR ERV1 0 559 1 713 178 7 22 chr3 114374745 114374880 -113149698 - FLAM_C SINE Alu 0 133 1 1882 113 41 34 chr3 114374897 114375189 -113149389 - AluSx SINE Alu -18 294 1 23 0 0 0 chr3 114375510 114375533 -113149045 + AT_rich Low_complexity Low_complexity 1 23 0 564 340 109 24 chr3 114375551 114375711 -113148867 - L2 LINE L2 -1 3271 3126 2420 110 0 0 chr3 114375711 114376021 -113148557 + AluSq SINE Alu 1 310 -3 564 340 109 24 chr3 114376021 114376189 -113148389 - L2 LINE L2 -146 3126 2915 2293 146 63 24 chr3 114376263 114376675 -113147903 + MSTA LTR MaLR 1 428 0 10232 160 20 10 chr3 114376675 114377638 -113146940 + MSTA-int LTR MaLR 1 987 -664 1935 157 13 3 chr3 114377638 114377937 -113146641 + AluJb SINE Alu 1 302 -10 10232 160 20 10 chr3 114377937 114378609 -113145969 + MSTA-int LTR MaLR 987 1651 0 2362 167 81 0 chr3 114378609 114379005 -113145573 + MSTA LTR MaLR 1 428 0 1308 170 180 10 chr3 114379005 114379177 -113145401 - MER31A LTR ERV1 -27 458 317 3160 91 19 60 chr3 114379177 114379640 -113144938 + MLT2A1 LTR ERVL 1 444 0 1308 170 180 10 chr3 114379640 114379775 -113144803 - MER31A LTR ERV1 -168 317 98 1560 194 10 7 chr3 114379776 114380065 -113144513 - AluJo SINE Alu -9 303 14 2391 96 0 0 chr3 114380553 114380855 -113143723 + AluSc SINE Alu 1 302 -7 2364 73 0 10 chr3 114381099 114381400 -113143178 + AluY SINE Alu 1 298 -13 212 289 128 48 chr3 114381849 114382185 -113142393 + L2 LINE L2 1563 1925 -1389 951 212 9 5 chr3 114382647 114382864 -113141714 + AluJo SINE Alu 85 302 -10 1384 125 25 4 chr3 114383662 114383902 -113140676 + L1MB3 LINE L1 5932 6176 -7 183 184 122 0 chr3 114384068 114384117 -113140461 + L2 LINE L2 3217 3271 -1 234 167 0 0 chr3 114384169 114384211 -113140367 + L1PA15 LINE L1 6001 6042 -123 1487 94 0 5 chr3 114384662 114384853 -113139725 - AluSg SINE Alu -120 190 1 1618 171 93 0 chr3 114384853 114385133 -113139445 - AluJo SINE Alu -6 306 1 1482 244 149 4 chr3 114385136 114385653 -113138925 - L1MC4 LINE L1 -213 7829 7238 2007 191 37 56 chr3 114385672 114385859 -113138719 + MER68 LTR ERV1 1 190 -372 1940 134 0 28 chr3 114385859 114386176 -113138402 + AluSx SINE Alu 1 309 0 2007 191 37 56 chr3 114386176 114386472 -113138106 + MER68 LTR ERV1 190 477 -85 2291 66 0 11 chr3 114386477 114386797 -113137781 + AluSq SINE Alu 1 317 0 277 170 0 0 chr3 114386850 114386897 -113137681 + MER68 LTR ERV1 482 528 -34 228 211 44 127 chr3 114387036 114387103 -113137475 + MER41E LTR ERV1 55 126 -386 1476 101 69 5 chr3 114387103 114387321 -113137257 + AluSq SINE Alu 69 300 -13 228 211 44 127 chr3 114387321 114387481 -113137097 + MER41E LTR ERV1 126 263 -249 1481 187 4 0 chr3 114387481 114387732 -113136846 - AluJo SINE Alu -52 260 9 385 193 24 12 chr3 114387929 114388012 -113136566 - MLT1A1 LTR MaLR -15 350 267 2172 96 0 0 chr3 114388013 114388285 -113136293 + AluSc SINE Alu 1 272 -37 3247 247 21 18 chr3 114388293 114389301 -113135277 + L1P LINE L1 1669 2679 -3467 251 167 19 0 chr3 114389294 114389348 -113135230 + L1ME2 LINE L1 5380 5434 -730 * 2165 98 3 3 chr3 114389354 114389671 -113134907 + AluSp SINE Alu 1 317 0 1017 182 42 4 chr3 114389674 114389910 -113134668 + L1ME2 LINE L1 5740 5984 -180 31 76 0 0 chr3 114389980 114390046 -113134532 + AT_rich Low_complexity Low_complexity 1 66 0 1645 188 7 0 chr3 114390578 114390855 -113133723 - AluJo SINE Alu -14 298 20 921 176 0 0 chr3 114390861 114391009 -113133569 - AluJo SINE Alu -164 148 1 2293 78 3 3 chr3 114391261 114391557 -113133021 + AluSp SINE Alu 1 296 -17 1361 197 93 7 chr3 114391567 114391836 -113132742 + AluJb SINE Alu 1 292 -20 639 175 217 11 chr3 114391927 114392166 -113132412 + MLT1B LTR MaLR 2 308 -82 1314 198 61 22 chr3 114392167 114392445 -113132133 + AluJo SINE Alu 1 289 -23 2980 79 19 0 chr3 114392445 114392861 -113131717 + L1PA13 LINE L1 5740 6163 0 23 0 0 0 chr3 114393297 114393320 -113131258 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr3 114393549 114393581 -113130997 + AT_rich Low_complexity Low_complexity 1 32 0 247 326 0 12 chr3 114393875 114393961 -113130617 + L2 LINE L2 2897 2981 -291 5454 114 53 2 chr3 114394053 114395365 -113129213 + L1PA11 LINE L1 4797 6172 -2 261 308 0 77 chr3 114395365 114395443 -113129135 + L2 LINE L2 3191 3262 -10 350 255 152 0 chr3 114395475 114395620 -113128958 + L1ME4a LINE L1 5854 6020 -101 1574 199 0 27 chr3 114395714 114396015 -113128563 - AluJo SINE Alu -19 293 1 1975 151 3 3 chr3 114396030 114396329 -113128249 - AluSx SINE Alu -13 299 1 3717 171 60 128 chr3 114396507 114397133 -113127445 + L1MC4a LINE L1 6417 7084 -724 318 246 0 0 chr3 114397133 114397194 -113127384 + AluJ/FLAM SINE Alu 2 62 -240 198 103 0 0 chr3 114397196 114397225 -113127353 + (TAAG)n Simple_repeat Simple_repeat 1 29 0 3717 171 60 128 chr3 114397225 114397259 -113127319 + L1MC4a LINE L1 7085 7120 -688 1769 177 24 0 chr3 114397259 114397547 -113127031 - AluJb SINE Alu -17 295 1 3717 171 60 128 chr3 114397547 114398147 -113126431 + L1MC4a LINE L1 7120 7650 -158 1642 149 18 0 chr3 114398175 114398451 -113126127 + MER1B DNA MER1_type 59 339 0 519 225 46 0 chr3 114398458 114398609 -113125969 + L1MD3 LINE L1 7830 7987 -8 1843 84 4 13 chr3 114398838 114398987 -113125591 - AluSx SINE Alu -30 282 134 2285 107 0 0 chr3 114398987 114399286 -113125292 - AluY SINE Alu -12 299 1 1843 84 4 13 chr3 114399286 114399375 -113125203 - AluSx SINE Alu -178 134 46 1726 137 53 14 chr3 114399726 114400011 -113124567 + AluJo SINE Alu 2 297 -15 33 0 0 0 chr3 114400795 114400828 -113123750 + AT_rich Low_complexity Low_complexity 1 33 0 337 250 12 128 chr3 114401122 114401286 -113123292 - L2 LINE L2 -11 3302 3158 829 271 41 0 chr3 114401300 114401614 -113122964 + L1M4 LINE L1 4842 5168 -978 606 155 10 0 chr3 114401614 114401717 -113122861 + U13 snRNA snRNA 1 104 0 321 143 36 0 chr3 114401756 114401836 -113122742 - AluSp/q SINE Alu 0 308 227 2432 84 0 10 chr3 114401957 114402266 -113122312 + AluY SINE Alu 1 306 -5 2808 214 15 77 chr3 114402266 114402799 -113121779 + L1ME2 LINE L1 4411 4976 -1170 4112 115 34 59 chr3 114402799 114403564 -113121014 + L1PA16 LINE L1 5418 6163 -3 2808 214 15 77 chr3 114403564 114403665 -113120913 + L1ME2 LINE L1 4976 5082 -1064 2029 131 3 20 chr3 114403665 114403962 -113120616 + AluSx SINE Alu 1 292 -20 2808 214 15 77 chr3 114403962 114404286 -113120292 + L1ME2 LINE L1 5082 5310 -836 9523 180 160 5 chr3 114404297 114407201 -113117377 + L1PBa LINE L1 6 3359 -3503 4402 220 20 4 chr3 114407231 114408342 -113116236 - L1P LINE L1 -823 5323 4195 3436 203 51 13 chr3 114408342 114408485 -113116093 + L1PA15-16 LINE L1 2176 2312 -4537 1880 124 7 4 chr3 114408485 114408759 -113115819 + AluSx SINE Alu 1 275 -37 3436 203 51 13 chr3 114408759 114409776 -113114802 + L1PA15-16 LINE L1 2312 3382 -3467 251 167 19 0 chr3 114409769 114409823 -113114755 + L1ME2 LINE L1 5380 5434 -728 * 2165 98 3 3 chr3 114409829 114410146 -113114432 + AluSp SINE Alu 1 317 0 1017 182 42 4 chr3 114410149 114410385 -113114193 + L1ME2 LINE L1 5740 5984 -180 31 76 0 0 chr3 114410455 114410521 -113114057 + AT_rich Low_complexity Low_complexity 1 66 0 1645 188 7 0 chr3 114411053 114411330 -113113248 - AluJo SINE Alu -14 298 20 921 176 0 0 chr3 114411336 114411484 -113113094 - AluJo SINE Alu -164 148 1 2293 78 3 3 chr3 114411736 114412032 -113112546 + AluSp SINE Alu 1 296 -17 1329 196 89 7 chr3 114412042 114412312 -113112266 + AluJb SINE Alu 1 292 -20 639 175 217 11 chr3 114412403 114412642 -113111936 + MLT1B LTR MaLR 2 308 -82 1314 198 61 22 chr3 114412643 114412921 -113111657 + AluJo SINE Alu 1 289 -23 2980 79 19 0 chr3 114412921 114413337 -113111241 + L1PA13 LINE L1 5740 6163 0 23 0 0 0 chr3 114413773 114413796 -113110782 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr3 114414025 114414057 -113110521 + AT_rich Low_complexity Low_complexity 1 32 0 247 326 0 12 chr3 114414351 114414437 -113110141 + L2 LINE L2 2897 2981 -291 5454 114 53 2 chr3 114414529 114415841 -113108737 + L1PA11 LINE L1 4797 6172 -2 261 308 0 77 chr3 114415841 114415919 -113108659 + L2 LINE L2 3191 3262 -10 350 255 152 0 chr3 114415951 114416096 -113108482 + L1ME4a LINE L1 5854 6020 -101 1574 199 0 27 chr3 114416190 114416491 -113108087 - AluJo SINE Alu -19 293 1 1975 151 3 3 chr3 114416506 114416805 -113107773 - AluSx SINE Alu -13 299 1 3717 171 60 128 chr3 114416983 114417609 -113106969 + L1MC4a LINE L1 6417 7084 -724 318 246 0 0 chr3 114417609 114417670 -113106908 + AluJ/FLAM SINE Alu 2 62 -240 198 103 0 0 chr3 114417672 114417701 -113106877 + (TAAG)n Simple_repeat Simple_repeat 1 29 0 3717 171 60 128 chr3 114417701 114417735 -113106843 + L1MC4a LINE L1 7085 7120 -688 1769 177 24 0 chr3 114417735 114418023 -113106555 - AluJb SINE Alu -17 295 1 3717 171 60 128 chr3 114418023 114418623 -113105955 + L1MC4a LINE L1 7120 7650 -158 1642 149 18 0 chr3 114418651 114418927 -113105651 + MER1B DNA MER1_type 59 339 0 519 225 46 0 chr3 114418934 114419085 -113105493 + L1MD3 LINE L1 7830 7987 -8 1843 84 4 13 chr3 114419314 114419463 -113105115 - AluSx SINE Alu -30 282 134 2386 90 0 0 chr3 114419463 114419762 -113104816 - AluY SINE Alu -12 299 1 1843 84 4 13 chr3 114419762 114419851 -113104727 - AluSx SINE Alu -178 134 46 1726 137 53 14 chr3 114420202 114420487 -113104091 + AluJo SINE Alu 2 297 -15 33 0 0 0 chr3 114421263 114421296 -113103282 + AT_rich Low_complexity Low_complexity 1 33 0 337 250 12 128 chr3 114421590 114421754 -113102824 - L2 LINE L2 -11 3302 3158 1662 289 126 5 chr3 114421768 114422059 -113102519 + L1ME2 LINE L1 4842 5096 -1068 1851 182 0 13 chr3 114422059 114422367 -113102211 + AluJb SINE Alu 1 304 -8 1662 289 126 5 chr3 114422367 114423087 -113101491 + L1ME2 LINE L1 5096 5980 -184 1913 143 3 10 chr3 114423090 114423390 -113101188 + AluJb SINE Alu 1 298 -14 2108 114 3 29 chr3 114423595 114423901 -113100677 + AluSq SINE Alu 1 298 -15 472 179 38 9 chr3 114424065 114424171 -113100407 + L1PB4 LINE L1 5782 5890 -266 1232 182 18 18 chr3 114424177 114424397 -113100181 + AluJb SINE Alu 15 234 -78 779 126 17 0 chr3 114424398 114424517 -113100061 + AluJb SINE Alu 190 310 -2 1523 147 23 8 chr3 114424522 114424781 -113099797 + L1PB4 LINE L1 5893 6155 -1 21 36 0 0 chr3 114424967 114424995 -113099583 + AT_rich Low_complexity Low_complexity 1 28 0 501 256 185 48 chr3 114425068 114425295 -113099283 + MIR SINE MIR 1 258 -4 2211 110 3 0 chr3 114425447 114425746 -113098832 - AluSx SINE Alu -12 300 1 323 333 156 0 chr3 114425959 114426145 -113098433 - MIR SINE MIR -43 219 5 1950 149 0 26 chr3 114426372 114426681 -113097897 + AluJo SINE Alu 1 301 -11 1150 157 9 29 chr3 114427049 114427259 -113097319 + AluSg/x SINE Alu 89 294 -18 2525 190 36 42 chr3 114427260 114427440 -113097138 + L1M1 LINE L1 3418 3598 -3967 1976 131 32 0 chr3 114427440 114427722 -113096856 + AluSx SINE Alu 1 291 -21 2525 190 36 42 chr3 114427722 114427735 -113096843 + L1M1 LINE L1 3598 3610 -3955 1958 147 150 5 chr3 114427735 114428109 -113096469 + MSTA LTR MaLR 1 428 0 2525 190 36 42 chr3 114428109 114428668 -113095910 + L1M1 LINE L1 3610 4177 -3388 2071 144 3 0 chr3 114428668 114428967 -113095611 + AluSq SINE Alu 1 300 -13 669 109 11 0 chr3 114429073 114429165 -113095413 + AluSg/x SINE Alu 208 300 -10 346 276 0 20 chr3 114429165 114429263 -113095315 - L1M4 LINE L1 -3587 2795 2700 6768 50 14 1 chr3 114429275 114430119 -113094459 - L1PA6 LINE L1 -5 6149 5295 2503 190 29 6 chr3 114430116 114430606 -113093972 - L1P LINE L1 -5640 506 6 * 1324 235 58 88 chr3 114430607 114430927 -113093651 - L1M4 LINE L1 -3670 2712 2384 2164 111 20 3 chr3 114430927 114431224 -113093354 - AluSq SINE Alu -11 302 1 1324 235 58 88 chr3 114431224 114431564 -113093014 - L1M4 LINE L1 -3998 2384 2035 2068 138 0 0 chr3 114431564 114431893 -113092685 - AluSx SINE Alu 0 329 1 1324 235 58 88 chr3 114431893 114432509 -113092069 - L1M4 LINE L1 -4347 2035 1484 2365 84 0 3 chr3 114432509 114432806 -113091772 - AluY SINE Alu -13 298 3 1324 235 58 88 chr3 114432806 114433020 -113091558 - L1M4 LINE L1 -4898 1484 1265 1129 191 54 0 chr3 114433021 114433225 -113091353 + Tigger3(Golem) DNA MER2_type 1 215 -2814 530 113 0 0 chr3 114433226 114433297 -113091281 + AluS SINE Alu 2 72 -237 1610 151 24 38 chr3 114433542 114433834 -113090744 - AluJb SINE Alu -19 293 6 316 194 140 0 chr3 114434424 114434517 -113090061 + L1MD3 LINE L1 7667 7772 -223 1181 242 56 3 chr3 114434607 114434892 -113089686 + AluJb SINE Alu 1 300 -2 1829 138 33 13 chr3 114435214 114435519 -113089059 - AluJo SINE Alu -1 311 1 3920 161 92 30 chr3 114435658 114436490 -113088088 - Cheshire DNA MER1_type -1 2419 1536 627 204 15 15 chr3 114436496 114436628 -113087950 + MER49 LTR ERV1 1 132 -791 26 0 0 0 chr3 114436730 114436756 -113087822 + AT_rich Low_complexity Low_complexity 1 26 0 1248 175 12 125 chr3 114436765 114437102 -113087476 - AluJo SINE Alu -3 299 1 1190 236 91 38 chr3 114437102 114437463 -113087115 - L1M4 LINE L1 -1122 5024 4633 2012 151 0 10 chr3 114437463 114437774 -113086804 - AluSq SINE Alu -5 308 1 1190 236 91 38 chr3 114437774 114437861 -113086717 - L1M4 LINE L1 -1513 4633 4552 2011 151 0 26 chr3 114437861 114438212 -113086366 - MER4E LTR ERV1 0 766 425 812 305 71 43 chr3 114438494 114438721 -113085857 + L1MEd LINE L1 223 442 -5677 2167 115 7 0 chr3 114438721 114439016 -113085562 - AluSp SINE Alu -12 301 5 812 305 71 43 chr3 114439016 114439227 -113085351 + L1MEd LINE L1 442 673 -5446 1537 197 45 34 chr3 114439231 114439587 -113084991 - MLT1A1 LTR MaLR -5 360 1 1729 159 14 4 chr3 114439636 114439913 -113084665 + AluJb SINE Alu 1 280 -32 768 92 0 0 chr3 114439971 114440069 -113084509 + HY3 scRNA scRNA 1 98 -3 765 145 0 43 chr3 114440341 114440479 -113084099 + FLAM_C SINE Alu 1 132 -1 2359 144 3 34 chr3 114440601 114440923 -113083655 + MER49 LTR ERV1 543 853 -70 2231 94 0 39 chr3 114440923 114441230 -113083348 - AluSq SINE Alu -18 295 1 2359 144 3 34 chr3 114441230 114441289 -113083289 + MER49 LTR ERV1 853 912 -11 2521 192 73 29 chr3 114441294 114441883 -113082695 - Cheshire DNA MER1_type -889 1531 917 570 176 147 0 chr3 114441926 114442028 -113082550 - FLAM_A SINE Alu -16 126 10 484 172 71 10 chr3 114442039 114442138 -113082440 - Cheshire DNA MER1_type -1488 932 828 60 15 0 0 chr3 114442140 114442207 -113082371 + AT_rich Low_complexity Low_complexity 1 67 0 872 154 0 0 chr3 114442207 114442330 -113082248 - FLAM_C SINE Alu -10 123 1 2428 169 65 180 chr3 114442330 114442724 -113081854 - Cheshire DNA MER1_type -1582 838 431 798 188 85 6 chr3 114442724 114442889 -113081689 - AluJo SINE Alu -16 296 119 2428 169 65 180 chr3 114442889 114443276 -113081302 - Cheshire DNA MER1_type -1989 431 1 2300 86 30 0 chr3 114443349 114443653 -113080925 + AluSq SINE Alu 1 313 0 2287 97 3 3 chr3 114444867 114445167 -113079411 - AluSx SINE Alu -12 300 1 822 237 28 19 chr3 114445168 114445460 -113079118 - MLT2D LTR ERVL -68 346 1 2303 91 6 28 chr3 114445482 114445802 -113078776 + AluSp SINE Alu 1 313 0 894 167 0 0 chr3 114445806 114445944 -113078634 + FLAM_C SINE Alu 3 140 -3 758 156 0 52 chr3 114446113 114446267 -113078311 - AluSg/x SINE Alu -3 307 162 1242 162 14 0 chr3 114446267 114446477 -113078101 - AluJo SINE Alu -13 299 87 827 156 7 0 chr3 114446477 114446612 -113077966 - MER33 DNA MER1_type -187 137 2 1682 171 10 14 chr3 114447179 114447472 -113077106 - AluJo SINE Alu -20 292 1 2038 113 13 29 chr3 114447519 114447830 -113076748 + AluSx SINE Alu 1 306 -6 2215 106 0 28 chr3 114448154 114448474 -113076104 + AluSq SINE Alu 1 311 -2 406 146 313 0 chr3 114448474 114448618 -113075960 + MER33 DNA MER1_type 173 361 -2 2100 112 3 7 chr3 114448656 114448960 -113075618 + AluSp SINE Alu 2 304 -9 457 339 70 4 chr3 114448969 114449199 -113075379 - MIR SINE MIR -14 248 4 23 68 0 0 chr3 114449565 114449609 -113074969 + AT_rich Low_complexity Low_complexity 1 44 0 786 161 0 134 chr3 114449613 114449799 -113074779 - LTR24 LTR ERV1 -301 166 6 806 230 0 0 chr3 114449799 114449947 -113074631 - FAM SINE Alu -37 148 1 388 250 128 20 chr3 114449990 114450186 -113074392 - L1MC4a LINE L1 -1644 6164 5948 906 136 0 0 chr3 114450232 114450357 -113074221 + FLAM_C SINE Alu 1 125 -18 2228 106 13 0 chr3 114450414 114450715 -113073863 - AluSx SINE Alu -1 311 7 628 167 0 0 chr3 114450836 114450938 -113073640 + AluSg/x SINE Alu 203 304 -5 446 149 58 11 chr3 114450991 114451078 -113073500 + MER53 DNA DNA 16 106 -83 522 114 13 0 chr3 114451110 114451189 -113073389 - MER53 DNA DNA -88 101 22 514 134 12 0 chr3 114451116 114451198 -113073380 + MER53 DNA DNA 105 187 -2 * 230 319 44 0 chr3 114451213 114451304 -113073274 + MIR SINE MIR 153 247 -15 1557 163 136 0 chr3 114451504 114451762 -113072816 + AluJb SINE Alu 3 295 -7 2285 103 10 0 chr3 114452937 114453282 -113071296 - AluSq SINE Alu 0 348 1 780 172 39 0 chr3 114453887 114454015 -113070563 + FLAM_C SINE Alu 1 133 0 604 88 86 2 chr3 114454071 114454993 -113069585 + (TA)n Simple_repeat Simple_repeat 1 999 0 2206 90 0 7 chr3 114454993 114455283 -113069295 - AluSp SINE Alu -25 288 1 180 227 106 0 chr3 114455694 114455760 -113068818 + MIR3 SINE MIR 122 194 -14 487 281 32 77 chr3 114457047 114457268 -113067310 - MIR SINE MIR 0 262 52 221 315 99 0 chr3 114457290 114457401 -113067177 - MIR SINE MIR -15 247 126 264 311 142 0 chr3 114458254 114458360 -113066218 - L2 LINE L2 0 3313 3193 360 383 7 21 chr3 114459074 114459215 -113065363 + MIR3 SINE MIR 19 157 -51 825 276 49 8 chr3 114459217 114459463 -113065115 - MIR SINE MIR -3 259 4 2258 93 7 13 chr3 114459491 114459801 -113064777 - AluSq SINE Alu -5 308 1 1794 159 24 3 chr3 114460299 114460588 -113063990 + AluSx SINE Alu 1 295 -17 961 182 66 22 chr3 114460822 114461003 -113063575 - AluJ SINE Alu -17 295 107 451 165 101 0 chr3 114461004 114461083 -113063495 - AluSg/x SINE Alu -8 304 218 1778 128 0 4 chr3 114461094 114461343 -113063235 - AluSq SINE Alu -65 248 1 779 176 0 0 chr3 114461343 114461451 -113063127 - AluJ SINE Alu -195 117 10 2299 86 0 0 chr3 114461469 114461801 -113062777 - AluSg SINE Alu 0 332 1 1978 140 7 16 chr3 114462430 114462738 -113061840 - AluJo SINE Alu -7 305 1 254 290 107 8 chr3 114462819 114462950 -113061628 + MIR3 SINE MIR 56 199 -9 1930 168 7 0 chr3 114464080 114464378 -113060200 + AluJo SINE Alu 1 300 -12 2771 29 0 0 chr3 114464756 114465067 -113059511 - AluYa5 SINE Alu 0 311 1 2278 105 3 0 chr3 114465067 114465363 -113059215 - AluSp SINE Alu -16 297 1 549 198 122 41 chr3 114466165 114466337 -113058241 + MIR SINE MIR 65 250 -12 31989 106 19 64 chr3 114466628 114470864 -113053714 + L1PA7 LINE L1 1 4424 -1730 2123 123 0 0 chr3 114470864 114471156 -113053422 + AluSg1 SINE Alu 1 292 -17 31989 106 19 64 chr3 114471156 114471828 -113052750 + L1PA7 LINE L1 4424 5124 -1030 2455 74 3 0 chr3 114471828 114472127 -113052451 - AluSp SINE Alu -13 300 1 31989 106 19 64 chr3 114472127 114472998 -113051580 + L1PA7 LINE L1 5124 5450 -704 2454 87 0 6 chr3 114472998 114473309 -113051269 + AluSg SINE Alu 1 309 -1 31989 106 19 64 chr3 114473309 114473984 -113050594 + L1PA7 LINE L1 5450 6154 0 23 0 0 0 chr3 114474086 114474109 -113050469 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr3 114474142 114474166 -113050412 + AT_rich Low_complexity Low_complexity 1 24 0 1737 151 35 7 chr3 114474201 114474485 -113050093 + AluJb SINE Alu 1 292 -20 21 36 0 0 chr3 114474564 114474592 -113049986 + AT_rich Low_complexity Low_complexity 1 28 0 1487 221 0 7 chr3 114474645 114474935 -113049643 - AluJo SINE Alu -24 288 1 831 241 62 39 chr3 114474935 114474961 -113049617 + L1ME LINE L1 5461 5485 -677 2317 90 7 7 chr3 114474961 114475260 -113049318 + AluSp SINE Alu 1 299 -14 831 241 62 39 chr3 114475260 114475490 -113049088 + L1ME LINE L1 5485 5723 -439 2315 102 3 0 chr3 114475547 114475840 -113048738 + AluSq SINE Alu 7 300 -13 1541 187 10 33 chr3 114476500 114476805 -113047773 - AluJb SINE Alu -14 298 1 446 190 69 17 chr3 114476813 114476929 -113047649 - L1MC5 LINE L1 -30 7931 7810 216 0 0 0 chr3 114476975 114476999 -113047579 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 4526 26 0 0 chr3 114477002 114477492 -113047086 - L1PA3 LINE L1 -8 6147 5658 5824 19 0 0 chr3 114477492 114478451 -113046127 + L1PA3 LINE L1 4716 5674 -481 2525 67 0 0 chr3 114478498 114478798 -113045780 - AluY SINE Alu -11 300 1 1054 66 15 0 chr3 114478802 114478938 -113045640 - AluSp/q SINE Alu -17 296 159 1747 175 6 32 chr3 114479080 114479394 -113045184 + AluJo SINE Alu 1 306 -6 2487 75 0 0 chr3 114479885 114480179 -113044399 - AluY SINE Alu -17 294 1 7894 23 1 0 chr3 114480236 114481687 -113042891 - L1PA3 LINE L1 -3 6152 4701 29523 42 7 5 chr3 114481687 114485282 -113039296 - L1PA3 LINE L1 -2530 3616 15 553 152 10 10 chr3 114485282 114485381 -113039197 - FLAM_A SINE Alu 0 142 44 403 103 46 92 chr3 114485483 114485570 -113039008 + Alu SINE Alu 213 295 -5 2476 57 10 7 chr3 114485710 114486008 -113038570 - AluSq SINE Alu -14 299 1 447 70 0 0 chr3 114486544 114486601 -113037977 - Alu SINE Alu -16 296 240 1820 28 0 0 chr3 114486932 114487143 -113037435 - L1P2 LINE L1 -583 5571 5361 1787 33 0 0 chr3 114487143 114487352 -113037226 + L1PA5 LINE L1 5945 6154 0 210 37 0 0 chr3 114488677 114488704 -113035874 + (CGGGG)n Simple_repeat Simple_repeat 1 27 0 611 251 17 17 chr3 114489590 114489765 -113034813 - MER5B DNA MER1_type -1 177 3 183 233 174 23 chr3 114489794 114489880 -113034698 + L2 LINE L2 3126 3224 -89 22 0 0 0 chr3 114491373 114491395 -113033183 + AT_rich Low_complexity Low_complexity 1 22 0 1688 172 9 49 chr3 114491692 114492017 -113032561 - AluJb SINE Alu 0 312 1 21 0 0 0 chr3 114492112 114492133 -113032445 + AT_rich Low_complexity Low_complexity 1 21 0 2524 64 0 0 chr3 114492134 114492430 -113032148 - AluY SINE Alu -15 296 1 227 281 16 0 chr3 114493125 114493189 -113031389 + L2 LINE L2 3245 3309 -4 184 343 57 0 chr3 114494873 114494943 -113029635 - L2 LINE L2 -1 3271 3198 1032 108 22 43 chr3 114495825 114496010 -113028568 - L1MB3 LINE L1 0 6183 6003 450 124 0 4 chr3 114496010 114496204 -113028374 + AluSx SINE Alu 1 262 -48 428 97 56 0 chr3 114496350 114496422 -113028156 - Alu SINE Alu -233 77 2 1323 137 156 85 chr3 114496422 114496776 -113027802 - L1MB3 LINE L1 -345 5967 5581 2334 89 10 0 chr3 114496776 114497079 -113027499 - AluSx SINE Alu -6 306 1 1323 137 156 85 chr3 114497079 114497096 -113027482 - L1MB3 LINE L1 -731 5581 5567 963 259 58 31 chr3 114497114 114497439 -113027139 + L1M4b LINE L1 11 344 -6515 292 0 22 44 chr3 114497453 114497498 -113027080 + (TTTTA)n Simple_repeat Simple_repeat 4 47 0 358 87 0 0 chr3 114497500 114497546 -113027032 - FLAM SINE Alu -19 114 69 1659 165 47 10 chr3 114497570 114497867 -113026711 + AluSx SINE Alu 1 308 -4 1689 158 0 4 chr3 114497977 114498236 -113026342 + AluSx SINE Alu 1 258 -54 208 0 62 0 chr3 114498242 114498274 -113026304 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 490 65 0 0 chr3 114498310 114498372 -113026206 + AluSx SINE Alu 1 62 -256 4100 55 4 0 chr3 114498385 114498873 -113025705 + LTR2B LTR ERV1 1 490 0 1733 117 9 0 chr3 114498873 114499104 -113025474 + AluSx SINE Alu 63 295 -17 243 139 0 0 chr3 114499104 114499140 -113025438 - Alu SINE Alu -264 37 2 2191 251 129 89 chr3 114499141 114499724 -113024854 + L1M4b LINE L1 349 908 -5951 1988 131 21 0 chr3 114499724 114500015 -113024563 + AluSx SINE Alu 1 297 -15 2272 84 3 0 chr3 114500017 114500332 -113024246 + AluSp SINE Alu 1 316 0 2191 251 129 89 chr3 114500332 114500762 -113023816 + L1M4b LINE L1 908 1406 -5453 22 0 0 0 chr3 114500764 114500786 -113023792 + AT_rich Low_complexity Low_complexity 1 22 0 252 0 0 0 chr3 114500797 114500825 -113023753 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 736 179 0 0 chr3 114500834 114500951 -113023627 - FLAM_C SINE Alu -25 118 2 2910 107 53 65 chr3 114500951 114501077 -113023501 - Tigger3b DNA MER2_type -2235 793 667 2091 109 0 13 chr3 114501077 114501381 -113023197 + AluY SINE Alu 1 300 -11 2910 107 53 65 chr3 114501381 114501512 -113023066 - Tigger3b DNA MER2_type -2361 667 536 2165 114 0 3 chr3 114501512 114501809 -113022769 + AluSc SINE Alu 1 296 -13 2033 141 0 10 chr3 114501818 114502122 -113022456 + AluSg SINE Alu 1 301 -9 2910 107 53 65 chr3 114502122 114502451 -113022127 - Tigger3b DNA MER2_type -2500 528 203 2107 101 20 3 chr3 114502452 114502749 -113021829 - AluY SINE Alu -9 302 1 1232 101 0 0 chr3 114502757 114502916 -113021662 - AluSg/x SINE Alu -20 290 132 2278 118 0 0 chr3 114502916 114503220 -113021358 - AluSg SINE Alu -6 304 1 296 170 0 19 chr3 114503220 114503273 -113021305 + MLT1A1 LTR MaLR 297 348 -17 * 2267 136 32 14 chr3 114503270 114503703 -113020875 + MER31A LTR ERV1 5 459 -7 3617 163 65 40 chr3 114504203 114504963 -113019615 - LTR19C LTR ERV1 0 779 1 964 209 0 11 chr3 114505041 114505232 -113019346 - MER5A DNA MER1_type 0 189 1 1527 127 198 8 chr3 114505252 114505505 -113019073 + AluSg1 SINE Alu 3 303 -6 2270 198 52 101 chr3 114505521 114506255 -113018323 + LTR34 LTR ERV1 2 699 0 1541 174 68 0 chr3 114506269 114506579 -113017999 - MER31A LTR ERV1 0 485 155 3324 105 51 10 chr3 114506579 114507066 -113017512 - MER84 LTR ERV1 0 507 1 9049 117 3 16 chr3 114507066 114508361 -113016217 - MER84-int LTR ERV1 -1 4953 3676 12537 129 3 22 chr3 114508404 114509376 -113015202 - MER84-int LTR ERV1 -1266 3688 2700 459 0 0 0 chr3 114509376 114509427 -113015151 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1963 120 3 11 chr3 114509429 114509713 -113014865 - AluSx SINE Alu -30 282 1 12537 129 3 22 chr3 114509713 114510627 -113013951 - MER84-int LTR ERV1 -2255 2699 1834 2096 92 33 0 chr3 114510628 114510901 -113013677 + AluSc SINE Alu 1 282 -27 34599 67 7 1 chr3 114510901 114515293 -113009285 - L1P LINE L1 -1716 4430 11 563 177 0 0 chr3 114515308 114515404 -113009174 - MER31A LTR ERV1 -389 96 1 2887 105 40 104 chr3 114515408 114515430 -113009148 - MER4B LTR ERV1 0 779 757 2353 105 3 0 chr3 114515430 114515734 -113008844 + AluSx SINE Alu 1 305 -7 2887 105 40 104 chr3 114515734 114515792 -113008786 - MER4B LTR ERV1 -22 757 697 1710 186 3 10 chr3 114515792 114516093 -113008485 + AluJo SINE Alu 1 299 -13 2887 105 40 104 chr3 114516093 114516680 -113007898 - MER4B LTR ERV1 -82 697 1 2285 106 6 6 chr3 114516697 114517009 -113007569 + AluSp SINE Alu 1 312 -1 1566 158 32 13 chr3 114517218 114517528 -113007050 - LTR23 LTR ERV1 0 437 122 2159 134 0 0 chr3 114517529 114517835 -113006743 + AluSx SINE Alu 1 306 -6 2274 199 60 26 chr3 114517907 114518445 -113006133 + MER67C LTR ERV1 124 679 -31 749 78 0 29 chr3 114518445 114518548 -113006030 - FLAM_C SINE Alu -15 128 29 3917 163 22 39 chr3 114518700 114518730 -113005848 - MER6 DNA MER2_type 0 865 836 2014 159 24 70 chr3 114518730 114519050 -113005528 - LTR23 LTR ERV1 0 437 143 2166 112 7 7 chr3 114519050 114519354 -113005224 + AluSg SINE Alu 1 304 -6 2014 159 24 70 chr3 114519354 114519491 -113005087 - LTR23 LTR ERV1 -294 143 1 3917 163 22 39 chr3 114519491 114519820 -113004758 - MER6 DNA MER2_type -29 836 503 3721 139 34 22 chr3 114519820 114520413 -113004165 - MER41B LTR ERV1 -1 634 32 2387 89 0 10 chr3 114520413 114520716 -113003862 + AluSp SINE Alu 1 300 -13 3721 139 34 22 chr3 114520716 114520749 -113003829 - MER41B LTR ERV1 -603 32 1 3917 163 22 39 chr3 114520749 114521142 -113003436 - MER6 DNA MER2_type -362 503 124 1941 228 74 84 chr3 114521270 114521971 -113002607 + LTR8A LTR ERV1 34 727 0 342 304 82 38 chr3 114522102 114522395 -113002183 + L2 LINE L2 715 1020 -2294 760 172 17 35 chr3 114522402 114522576 -113002002 - MER34 LTR ERV1 -1 541 371 1143 159 0 0 chr3 114522605 114522768 -113001810 - AluJb SINE Alu -21 291 129 604 185 27 79 chr3 114522772 114522963 -113001615 - MER34B LTR ERV1 -205 360 167 1486 187 4 0 chr3 114522963 114523214 -113001364 - LTR26B LTR ERV1 0 531 280 254 233 0 0 chr3 114523256 114523299 -113001279 - AluJb SINE Alu -60 242 200 * 643 77 66 0 chr3 114523298 114523389 -113001189 - LTR26B LTR ERV1 -240 291 195 822 166 7 21 chr3 114523390 114523535 -113001043 - AluJb SINE Alu -13 299 157 843 247 93 56 chr3 114523535 114523703 -113000875 + MER50 LTR ERV1 13 173 -561 1915 151 3 35 chr3 114523703 114524020 -113000558 + AluSx SINE Alu 1 307 -5 1859 179 0 3 chr3 114524022 114524324 -113000254 + AluSx SINE Alu 3 303 -9 843 247 93 56 chr3 114524324 114524561 -113000017 + MER50 LTR ERV1 173 436 -298 1240 169 31 22 chr3 114524576 114524801 -112999777 + THE1B LTR MaLR 1 227 -137 252 114 0 0 chr3 114524803 114524838 -112999740 + AluSx SINE Alu 51 85 -217 267 31 0 0 chr3 114524841 114524873 -112999705 + (CCCCCT)n Simple_repeat Simple_repeat 3 34 0 8158 78 8 170 chr3 114524875 114526471 -112998107 + SVA Other Other 51 1386 0 1558 127 4 18 chr3 114526477 114526706 -112997872 + AluSx SINE Alu 73 298 -14 189 0 0 0 chr3 114526734 114526755 -112997823 + (A)n Simple_repeat Simple_repeat 1 21 0 884 142 0 0 chr3 114526763 114526890 -112997688 + THE1B LTR MaLR 234 360 -4 12173 87 3 3 chr3 114526894 114528474 -112996104 + THE1B-int LTR MaLR 1 1580 0 2375 120 54 14 chr3 114528474 114528824 -112995754 + THE1B LTR MaLR 1 364 0 1365 168 30 15 chr3 114528826 114529088 -112995490 + MER50 LTR ERV1 469 734 0 850 187 0 15 chr3 114529121 114529255 -112995323 - FLAM_C SINE Alu -1 132 1 1156 147 91 0 chr3 114529255 114529486 -112995092 - LTR26B LTR ERV1 -341 281 1 527 199 9 94 chr3 114529503 114529666 -112994912 - MER34B LTR ERV1 -378 164 1 2286 183 68 68 chr3 114529704 114529940 -112994638 + MER34C LTR ERV1 1 236 -349 1660 144 58 48 chr3 114529940 114530232 -112994346 - AluSx SINE Alu -17 295 1 2286 183 68 68 chr3 114530232 114530360 -112994218 + MER34C LTR ERV1 236 363 -222 234 0 0 0 chr3 114530360 114530386 -112994192 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2286 183 68 68 chr3 114530386 114530605 -112993973 + MER34C LTR ERV1 362 585 0 295 296 52 17 chr3 114530694 114530809 -112993769 + L2 LINE L2 1180 1298 -2016 777 85 78 16 chr3 114530813 114530942 -112993636 - L1MB2 LINE L1 -36 6135 5999 1209 165 86 134 chr3 114530949 114531057 -112993521 - MER83 LTR ERV1 0 448 336 2260 105 10 0 chr3 114531057 114531362 -112993216 + AluSc SINE Alu 1 308 -1 1209 165 86 134 chr3 114531362 114531672 -112992906 - MER83 LTR ERV1 -112 336 50 824 91 0 0 chr3 114531671 114531781 -112992797 - MER83 LTR ERV1 -338 110 1 * 946 307 182 40 chr3 114531843 114532955 -112991623 + L2 LINE L2 1340 2609 -705 335 330 10 0 chr3 114532966 114533069 -112991509 - L2 LINE L2 0 3313 3210 307 284 106 69 chr3 114533075 114533395 -112991183 - Charlie8 DNA MER1_type -1998 419 88 812 160 15 0 chr3 114533433 114533564 -112991014 - AluJb SINE Alu -179 133 1 2519 43 3 0 chr3 114533643 114533943 -112990635 + AluY SINE Alu 1 301 -10 317 274 83 32 chr3 114534085 114534242 -112990336 + L1M4 LINE L1 3943 4107 -2039 3514 148 11 3 chr3 114534407 114534981 -112989597 - L1MB4 LINE L1 -2 6178 5601 214 338 53 38 chr3 114535085 114535218 -112989360 - L2 LINE L2 -13 3259 3125 2528 68 0 6 chr3 114535305 114535616 -112988962 - AluSx SINE Alu -3 309 1 2276 41 28 10 chr3 114536342 114536633 -112987945 + AluY SINE Alu 1 296 -15 195 42 0 0 chr3 114536645 114536669 -112987909 + (T)n Simple_repeat Simple_repeat 1 24 0 319 237 59 89 chr3 114536701 114536836 -112987742 - L2 LINE L2 -15 3298 3168 1645 115 14 144 chr3 114537080 114537428 -112987150 - AluSp SINE Alu 0 303 1 2270 97 7 7 chr3 114538227 114538526 -112986052 - AluSx SINE Alu -11 301 3 29 0 0 0 chr3 114539134 114539163 -112985415 + AT_rich Low_complexity Low_complexity 1 29 0 2091 176 64 42 chr3 114540285 114540740 -112983838 + MER21A LTR ERV1 459 923 -8 1753 159 0 14 chr3 114540816 114541111 -112983467 + AluJb SINE Alu 6 296 -16 827 197 0 0 chr3 114541195 114541342 -112983236 - FRAM SINE Alu -4 172 26 505 260 167 11 chr3 114541494 114541727 -112982851 - L2 LINE L2 -276 3037 2769 2650 228 232 49 chr3 114542010 114542733 -112981845 - L2 LINE L2 -610 2704 2115 2370 84 10 10 chr3 114542733 114543041 -112981537 + AluSp SINE Alu 1 308 -5 2650 228 232 49 chr3 114543041 114543067 -112981511 - L2 LINE L2 -1199 2115 2095 1640 123 0 25 chr3 114543067 114543311 -112981267 + AluSg/x SINE Alu 68 305 -7 1706 182 31 0 chr3 114543318 114543609 -112980969 + AluJb SINE Alu 1 300 -12 2650 228 232 49 chr3 114543609 114544040 -112980538 - L2 LINE L2 -1223 2091 1290 1058 156 28 11 chr3 114544040 114544220 -112980358 + MER5A DNA MER1_type 1 183 -6 207 327 0 0 chr3 114544217 114544272 -112980306 - L2 LINE L2 -2023 1291 1237 * 989 149 25 0 chr3 114544272 114544433 -112980145 + FRAM SINE Alu 12 176 0 22 0 0 0 chr3 114544485 114544507 -112980071 + AT_rich Low_complexity Low_complexity 1 22 0 562 273 25 19 chr3 114544546 114544707 -112979871 + MIR SINE MIR 100 261 -1 1443 133 24 28 chr3 114545062 114545311 -112979267 + LTR48B LTR ERV1 10 257 -387 964 194 6 0 chr3 114545311 114545481 -112979097 + FAM SINE Alu 1 171 -14 449 127 56 0 chr3 114545481 114545552 -112979026 + LTR48B LTR ERV1 245 319 -325 1003 153 6 0 chr3 114545552 114545709 -112978869 - AluJb SINE Alu -18 294 137 752 183 114 20 chr3 114545712 114545961 -112978617 + LTR48 LTR ERV1 310 729 -58 413 185 11 22 chr3 114545933 114546025 -112978553 + MER39 LTR ERV1 617 707 0 * 303 143 143 0 chr3 114546120 114546176 -112978402 - L2 LINE L2 -54 3218 3155 2098 92 7 7 chr3 114546358 114546639 -112977939 + AluSg SINE Alu 1 281 -29 243 0 0 0 chr3 114547080 114547107 -112977471 + (CA)n Simple_repeat Simple_repeat 2 28 0 473 286 56 11 chr3 114547154 114547332 -112977246 - MIR SINE MIR -70 192 7 1308 87 26 41 chr3 114550188 114550383 -112974195 - AluSc SINE Alu 0 309 118 30 0 0 0 chr3 114550383 114550413 -112974165 + AT_rich Low_complexity Low_complexity 1 30 0 1164 53 0 0 chr3 114550959 114551092 -112973486 - AluSc SINE Alu -176 133 1 2148 114 7 3 chr3 114551492 114551791 -112972787 - AluSx SINE Alu -12 300 1 201 175 0 25 chr3 114553182 114553222 -112971356 + L3 LINE CR1 1532 1570 -7 813 175 7 22 chr3 114554252 114554389 -112970189 + AluJo SINE Alu 2 136 -176 231 240 67 0 chr3 114554718 114554793 -112969785 + MER116 DNA Mariner 1 80 0 2125 121 0 13 chr3 114555370 114555701 -112968877 - AluSx SINE Alu 0 312 1 426 98 0 0 chr3 114555705 114555766 -112968812 - AluSp/q SINE Alu -10 303 243 1769 142 3 54 chr3 114555901 114556197 -112968381 - AluSx SINE Alu -31 281 1 665 195 0 16 chr3 114556546 114556669 -112967909 - FLAM_C SINE Alu -9 124 4 1298 122 11 5 chr3 114556801 114556990 -112967588 - AluSg/x SINE Alu -9 301 112 1762 141 0 15 chr3 114556990 114557260 -112967318 + AluSg SINE Alu 33 298 -12 2308 117 0 0 chr3 114558126 114558434 -112966144 + AluSx SINE Alu 1 308 -4 243 0 0 0 chr3 114558782 114558809 -112965769 + (TG)n Simple_repeat Simple_repeat 1 27 0 180 0 0 0 chr3 114558838 114558858 -112965720 + (GA)n Simple_repeat Simple_repeat 2 21 0 829 176 7 28 chr3 114558861 114559003 -112965575 - AluJb SINE Alu -38 274 136 471 154 26 13 chr3 114559004 114559082 -112965496 - FRAM/FAM SINE Alu -92 84 6 2325 82 14 0 chr3 114559208 114559502 -112965076 + AluSp SINE Alu 1 298 -15 2250 95 3 3 chr3 114560227 114560522 -112964056 + AluSg SINE Alu 1 295 -15 21 57 0 0 chr3 114560821 114560856 -112963722 + AT_rich Low_complexity Low_complexity 1 35 0 2988 201 62 15 chr3 114560858 114561520 -112963058 - L1MC4 LINE L1 -403 7639 6947 2353 96 0 7 chr3 114561647 114561948 -112962630 - AluSx SINE Alu -13 299 1 307 268 222 20 chr3 114561997 114562150 -112962428 + MIR SINE MIR 2 185 -77 1660 180 0 14 chr3 114562801 114563085 -112961493 - AluJo SINE Alu -32 280 1 750 144 27 0 chr3 114563200 114563311 -112961267 - FLAM_C SINE Alu -28 115 2 516 218 52 114 chr3 114563753 114563964 -112960614 + MER112 DNA MER1_type 35 232 -28 1424 163 0 0 chr3 114564003 114564224 -112960354 - AluJo SINE Alu -7 305 85 265 311 20 81 chr3 114564228 114564376 -112960202 + MER5A DNA MER1_type 1 139 -50 2219 122 3 0 chr3 114564398 114564709 -112959869 - AluSx SINE Alu 0 312 1 2266 108 3 0 chr3 114566962 114567258 -112957320 - AluSx SINE Alu -15 297 1 2345 87 0 19 chr3 114567372 114567683 -112956895 - AluY SINE Alu -6 305 1 1775 159 7 7 chr3 114568017 114568319 -112956259 - AluJb SINE Alu 0 312 11 780 220 117 79 chr3 114568608 114568932 -112955646 - L1MC4a LINE L1 0 7808 7462 2128 93 0 24 chr3 114568932 114569277 -112955301 - AluSg SINE Alu 0 339 2 780 220 117 79 chr3 114569277 114569370 -112955208 - L1MC4a LINE L1 -346 7462 7374 442 202 24 0 chr3 114569633 114569717 -112954861 + L1MC1 LINE L1 6231 6316 -17 1802 180 17 0 chr3 114569744 114570038 -112954540 + AluJb SINE Alu 2 300 -12 964 186 59 0 chr3 114570679 114570883 -112953695 - L1M4 LINE L1 -2368 3778 3563 452 143 105 0 chr3 114570892 114570997 -112953581 - L1MB3 LINE L1 -2 6181 6066 * 2534 121 44 12 chr3 114570989 114571402 -112953176 - L1MA4 LINE L1 -283 6017 5592 2469 75 0 0 chr3 114571943 114572251 -112952327 - AluY SINE Alu -3 308 1 308 336 33 0 chr3 114572293 114572415 -112952163 - L1MC4 LINE L1 -1303 6739 6614 307 252 0 23 chr3 114572325 114572454 -112952124 + L1MC4 LINE L1 1996 6983 -1339 * 317 311 0 0 chr3 114572461 114572551 -112952027 + L1MC4 LINE L1 6614 6703 -1339 2270 105 0 3 chr3 114572586 114572880 -112951698 - AluSq SINE Alu -20 293 1 235 129 32 0 chr3 114572883 114572945 -112951633 - L1 LINE L1 -2963 3183 3120 269 103 0 138 chr3 114573057 114573144 -112951434 + AluSc SINE Alu 225 299 0 584 330 7 10 chr3 114573171 114573465 -112951113 - L1MCa LINE L1 -5301 1125 833 769 188 0 23 chr3 114573465 114573598 -112950980 - FLAM_C SINE Alu -3 130 1 4653 108 7 60 chr3 114573605 114573754 -112950824 - L1PA15 LINE L1 0 6165 6010 2274 118 0 6 chr3 114573754 114574067 -112950511 - AluSx SINE Alu -1 311 1 4653 108 7 60 chr3 114574067 114574328 -112950250 - L1PA15 LINE L1 -155 6010 5808 1727 193 0 3 chr3 114574328 114574623 -112949955 - AluJb SINE Alu -16 296 3 4653 108 7 60 chr3 114574623 114574940 -112949638 - L1PA15 LINE L1 -357 5808 5476 313 66 0 82 chr3 114574940 114574995 -112949583 - L1PA15 LINE L1 0 6165 6110 1803 154 0 11 chr3 114574997 114575276 -112949302 - AluJb SINE Alu -10 302 27 511 156 36 0 chr3 114575277 114575383 -112949195 - LTR27 LTR ERV1 -270 898 284 1453 138 17 4 chr3 114575413 114575645 -112948933 - MER66A LTR ERV1 0 478 244 26 0 0 0 chr3 114575648 114575674 -112948904 + AT_rich Low_complexity Low_complexity 1 26 0 821 172 0 22 chr3 114575674 114575808 -112948770 - FLAM_C SINE Alu -10 133 3 1650 165 0 8 chr3 114575812 114576078 -112948500 - MER66B LTR ERV1 -222 264 1 811 203 156 77 chr3 114576270 114576473 -112948105 - MER21B LTR ERV1 -124 739 554 699 191 32 8 chr3 114576473 114576599 -112947979 - FLAM_A SINE Alu -4 129 1 811 203 156 77 chr3 114576599 114576616 -112947962 - MER21B LTR ERV1 -309 554 540 1912 115 68 4 chr3 114576616 114576894 -112947684 + AluSc SINE Alu 1 296 -13 811 203 156 77 chr3 114576894 114576998 -112947580 - MER21B LTR ERV1 -323 540 388 3204 205 7 12 chr3 114577038 114577643 -112946935 - LTR27 LTR ERV1 -32 604 3 519 291 54 43 chr3 114577645 114577687 -112946891 - MER21B LTR ERV1 -505 358 318 2384 104 3 0 chr3 114577687 114577995 -112946583 - AluSp SINE Alu -4 309 1 519 291 54 43 chr3 114577995 114578210 -112946368 - MER21B LTR ERV1 -545 318 98 21 0 0 0 chr3 114578314 114578335 -112946243 + AT_rich Low_complexity Low_complexity 1 21 0 563 183 0 11 chr3 114578596 114578689 -112945889 - AluJo SINE Alu -161 151 60 * 1315 195 0 5 chr3 114578663 114578884 -112945694 - AluJo SINE Alu -92 220 1 880 146 0 0 chr3 114578935 114579065 -112945513 - FLAM_C SINE Alu 0 133 4 494 260 107 21 chr3 114579104 114579346 -112945232 + L1ME LINE L1 3979 4241 -1905 1440 204 4 11 chr3 114579503 114579778 -112944800 - AluJo SINE Alu -39 273 1 183 156 0 0 chr3 114579836 114579868 -112944710 + (TA)n Simple_repeat Simple_repeat 2 33 0 1220 119 0 0 chr3 114580022 114580182 -112944396 + AluSx SINE Alu 1 160 -152 1087 114 13 13 chr3 114580288 114580446 -112944132 - AluSg/x SINE Alu -8 302 145 3617 123 31 11 chr3 114580446 114580999 -112943579 + LTR6A LTR ERV1 1 564 0 52294 176 17 18 chr3 114581001 114589910 -112934668 + HERVS71 LTR ERV1 4 8909 -69 3687 121 33 2 chr3 114589910 114590457 -112934121 + LTR6A LTR ERV1 1 564 0 719 183 15 0 chr3 114590474 114590605 -112933973 - FLAM_C SINE Alu 0 133 1 384 286 43 0 chr3 114590661 114590801 -112933777 + L1ME LINE L1 5121 5266 -880 1791 155 150 6 chr3 114590884 114591225 -112933353 + MSTA LTR MaLR 2 391 -37 2071 104 65 0 chr3 114591226 114591505 -112933073 - AluSx SINE Alu -15 297 1 706 205 61 36 chr3 114591514 114591536 -112933042 + L1ME LINE L1 5587 5607 -555 3348 173 68 19 chr3 114591536 114592229 -112932349 - LTR8A LTR ERV1 0 727 1 706 205 61 36 chr3 114592229 114592390 -112932188 + L1ME LINE L1 5607 5761 -401 3701 135 42 13 chr3 114592390 114592877 -112931701 + MER41B LTR ERV1 1 511 -124 2286 109 0 3 chr3 114592877 114593188 -112931390 - AluSg SINE Alu 0 310 1 3701 135 42 13 chr3 114593188 114593315 -112931263 + MER41B LTR ERV1 511 633 -2 706 205 61 36 chr3 114593315 114593374 -112931204 + L1ME LINE L1 5761 5817 -345 1229 111 0 0 chr3 114593383 114593545 -112931033 - AluSg/x SINE Alu -17 295 134 2071 140 0 3 chr3 114593545 114593845 -112930733 - AluSx SINE Alu -13 299 1 1507 120 94 23 chr3 114594051 114594725 -112929853 - LTR1B LTR ERV1 0 826 1 2253 102 17 0 chr3 114597297 114597591 -112926987 + AluSx SINE Alu 2 300 -12 540 298 73 16 chr3 114598670 114598861 -112925717 + MLT1K LTR MaLR 83 284 -304 517 275 47 26 chr3 114599097 114599290 -112925288 + L1M4 LINE L1 2 198 -6344 740 150 16 31 chr3 114599340 114599467 -112925111 - FLAM_C SINE Alu -4 129 5 2075 135 0 3 chr3 114599488 114599785 -112924793 - AluSx SINE Alu -16 296 1 265 161 54 0 chr3 114599948 114600004 -112924574 + L1MB8 LINE L1 6119 6177 -1 2063 119 7 14 chr3 114600326 114600621 -112923957 - AluY SINE Alu -18 293 1 2424 64 0 3 chr3 114601110 114601406 -112923172 - AluY SINE Alu -16 295 1 41 21 0 0 chr3 114601771 114601819 -112922759 + AT_rich Low_complexity Low_complexity 1 48 0 245 204 102 23 chr3 114602054 114602142 -112922436 - MER5C DNA MER1_type 0 324 230 317 94 0 0 chr3 114602166 114602219 -112922359 - MER5C DNA MER1_type -200 124 72 2192 120 0 25 chr3 114602297 114602613 -112921965 + AluSx SINE Alu 1 308 -4 2076 129 3 7 chr3 114602676 114602978 -112921600 + AluSx SINE Alu 1 301 -11 1487 178 10 59 chr3 114603155 114603459 -112921119 + AluJo SINE Alu 1 289 -23 1441 91 10 0 chr3 114603464 114603663 -112920915 + L1PB1 LINE L1 5669 5869 -282 2233 74 24 24 chr3 114603680 114603976 -112920602 - AluSg SINE Alu -14 296 1 652 147 0 0 chr3 114603986 114604081 -112920497 - AluSp/q SINE Alu -23 290 196 1744 121 73 0 chr3 114604083 114604356 -112920222 + L1PB1 LINE L1 5859 6151 0 1725 197 0 7 chr3 114604409 114604709 -112919869 + AluJb SINE Alu 1 298 -14 1840 256 175 30 chr3 114606147 114606402 -112918176 - HAL1 LINE L1 -296 2211 1994 2113 128 3 7 chr3 114606402 114606706 -112917872 + AluJb SINE Alu 1 303 -9 1840 256 175 30 chr3 114606706 114607480 -112917098 - HAL1 LINE L1 -513 1994 1033 21 57 0 0 chr3 114607480 114607515 -112917063 + AT_rich Low_complexity Low_complexity 1 35 0 741 40 80 0 chr3 114607516 114607616 -112916962 - HY1 scRNA scRNA -4 108 1 750 135 38 60 chr3 114607633 114607766 -112916812 - FLAM_C SINE Alu -3 130 1 1872 107 74 0 chr3 114607795 114608065 -112916513 + AluSp SINE Alu 2 291 -22 183 42 0 0 chr3 114608068 114608092 -112916486 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1792 168 3 17 chr3 114608220 114608382 -112916196 - AluJb SINE Alu -19 293 135 2412 91 3 0 chr3 114608382 114608689 -112915889 - AluY SINE Alu -3 308 1 1792 168 3 17 chr3 114608689 114608823 -112915755 - AluJb SINE Alu -177 135 1 298 128 0 0 chr3 114608944 114609007 -112915571 + Alu SINE Alu 245 307 0 260 305 85 8 chr3 114609061 114609179 -112915399 - HAL1 LINE L1 -1967 540 414 616 302 78 23 chr3 114609195 114609453 -112915125 - HAL1 LINE L1 -2197 310 39 595 247 103 0 chr3 114611391 114611585 -112912993 - MER58A DNA MER1_type -1 223 9 2236 107 0 7 chr3 114611833 114612142 -112912436 - AluSc SINE Alu -2 307 1 1292 192 51 31 chr3 114612142 114612427 -112912151 - AluJb SINE Alu -13 299 6 281 264 66 0 chr3 114612440 114612531 -112912047 - L1MC4a LINE L1 -1859 5949 5853 722 73 0 0 chr3 114612751 114612847 -112911731 - AluSp/q SINE Alu -10 303 208 4248 130 29 28 chr3 114612850 114613445 -112911133 + L1MA5 LINE L1 5536 6134 -166 1407 180 64 14 chr3 114613445 114613728 -112910850 + AluJo SINE Alu 1 297 -15 4248 130 29 28 chr3 114613728 114613896 -112910682 + L1MA5 LINE L1 6134 6300 0 1525 154 45 21 chr3 114614127 114614413 -112910165 - AluSx SINE Alu -19 293 1 214 301 14 14 chr3 114614822 114614895 -112909683 + L2 LINE L2 3229 3301 -12 2370 94 3 0 chr3 114614918 114615215 -112909363 - AluSp SINE Alu -15 298 1 849 209 17 6 chr3 114615710 114615882 -112908696 - FAM SINE Alu -1 174 1 1031 120 0 46 chr3 114617641 114617816 -112906762 + AluSg/x SINE Alu 124 290 -20 482 250 100 90 chr3 114617852 114618152 -112906426 + MLT1I LTR MaLR 70 372 -37 317 235 91 15 chr3 114618271 114618403 -112906175 - MIR SINE MIR -54 208 67 367 159 16 0 chr3 114618505 114618568 -112906010 - AluS SINE Alu -236 64 1 1527 147 78 4 chr3 114618842 114619100 -112905478 + AluSx SINE Alu 35 311 -1 1761 98 64 0 chr3 114619184 114619488 -112905090 + AluSx SINE Alu 1 321 0 234 258 0 15 chr3 114619651 114619717 -112904861 + MIR SINE MIR 79 143 -119 426 164 0 14 chr3 114619720 114619793 -112904785 + FRAM SINE Alu 42 113 -63 187 396 90 0 chr3 114620164 114620275 -112904303 - MIR3 SINE MIR -25 183 63 622 130 35 0 chr3 114620565 114620680 -112903898 + FLAM_C SINE Alu 1 119 -24 1811 72 126 4 chr3 114623304 114623566 -112901012 + AluSc SINE Alu 1 294 -5 31 44 0 0 chr3 114623572 114623617 -112900961 + AT_rich Low_complexity Low_complexity 1 45 0 726 84 19 9 chr3 114624105 114624212 -112900366 - AluY SINE Alu -17 294 187 2070 100 28 17 chr3 114624521 114624642 -112899936 + AluSx SINE Alu 1 119 -193 207 0 0 0 chr3 114624642 114624665 -112899913 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2070 100 28 17 chr3 114624665 114624834 -112899744 + AluSx SINE Alu 119 294 -18 2033 130 9 19 chr3 114626148 114626463 -112898115 - AluSx SINE Alu 0 312 1 730 111 7 97 chr3 114626465 114626609 -112897969 - AluJo/FLAM SINE Alu -180 132 2 1990 133 0 23 chr3 114626619 114626921 -112897657 - AluSg SINE Alu -15 295 1 1380 181 33 23 chr3 114626958 114627257 -112897321 + AluJb SINE Alu 11 312 0 326 224 2 0 chr3 114627269 114627344 -112897234 - L1MB4 LINE L1 -68 6112 6038 267 200 31 0 chr3 114627359 114627424 -112897154 - FRAM/FAM SINE Alu -107 68 2 1038 167 113 26 chr3 114627427 114627696 -112896882 - L1MB4 LINE L1 -465 5706 5411 2445 58 3 0 chr3 114629427 114629721 -112894857 - AluSp SINE Alu -18 295 1 312 317 20 0 chr3 114629986 114630087 -112894491 - MIR SINE MIR 0 262 160 659 198 102 37 chr3 114631076 114631263 -112893315 - MLT1D LTR MaLR 0 505 307 548 207 27 9 chr3 114631260 114631371 -112893207 + MLT1F1 LTR MaLR 447 559 -8 * 2157 99 46 0 chr3 114631480 114631763 -112892815 - AluSp SINE Alu -17 296 1 1673 180 13 10 chr3 114631871 114632176 -112892402 - AluJb SINE Alu -6 306 1 317 306 105 0 chr3 114632238 114632362 -112892216 - LTR16A LTR ERVL 0 450 314 702 191 0 0 chr3 114632395 114632510 -112892068 + FRAM SINE Alu 1 115 -61 561 354 57 0 chr3 114632517 114632797 -112891781 - LTR16A LTR ERVL -153 297 2 1086 169 0 0 chr3 114632843 114633021 -112891557 + AluSg/x SINE Alu 133 310 0 376 96 0 0 chr3 114633385 114633437 -112891141 + AluSx SINE Alu 1 52 -250 8235 48 7 7 chr3 114633438 114634407 -112890171 + LTR5 LTR ERVK 1 969 0 36677 91 5 5 chr3 114634407 114641497 -112883081 + HERVK LTR ERVK 1 7148 -95 471 63 11 168 chr3 114641497 114641592 -112882986 + SVA Other Other 857 936 -450 8587 43 1 1 chr3 114641592 114642561 -112882017 + LTR5 LTR ERVK 1 969 0 1805 102 20 0 chr3 114642561 114642807 -112881771 + AluSx SINE Alu 49 299 -13 1510 261 43 20 chr3 114642820 114642897 -112881681 - MER45C DNA AcHobo -628 953 879 2308 94 3 16 chr3 114642897 114643206 -112881372 + AluSg SINE Alu 1 305 -5 1510 261 43 20 chr3 114643206 114643526 -112881052 - MER45C DNA AcHobo -702 879 547 1130 218 21 29 chr3 114643671 114643914 -112880664 - MER45C DNA AcHobo -712 241 1 567 227 110 100 chr3 114643914 114643936 -112880642 + L1MC5 LINE L1 7497 7517 -444 1882 164 0 10 chr3 114643936 114644240 -112880338 + AluJo SINE Alu 1 301 -11 567 227 110 100 chr3 114644240 114644447 -112880131 + L1MC5 LINE L1 7517 7720 -241 2012 150 7 3 chr3 114644447 114644747 -112879831 + AluSq SINE Alu 1 301 -12 567 227 110 100 chr3 114644747 114644797 -112879781 + L1MC5 LINE L1 7720 7768 -193 2381 185 53 68 chr3 114644797 114645311 -112879267 + MLT2B3 LTR ERVL 1 521 -33 459 0 0 0 chr3 114645311 114645362 -112879216 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 2381 185 53 68 chr3 114645362 114645378 -112879200 + MLT2B3 LTR ERVL 521 536 -18 8576 48 0 0 chr3 114645378 114646347 -112878231 - LTR5 LTR ERVK 0 969 1 2381 185 53 68 chr3 114646347 114646376 -112878202 + MLT2B3 LTR ERVL 536 553 -1 567 227 110 100 chr3 114646376 114646408 -112878170 + L1MC5 LINE L1 7768 7798 -163 1473 206 24 7 chr3 114646408 114646699 -112877879 + AluJo SINE Alu 5 300 -12 2387 106 3 0 chr3 114646700 114647012 -112877566 + AluSq SINE Alu 1 313 0 567 227 110 100 chr3 114647012 114647104 -112877474 + L1MC5 LINE L1 7797 7909 -52 1408 221 35 27 chr3 114647252 114647618 -112876960 + L1ME2 LINE L1 5685 6053 -111 1973 132 7 0 chr3 114647619 114647907 -112876671 - AluSq SINE Alu -18 295 6 2002 125 4 4 chr3 114648075 114648380 -112876198 - AluSx SINE Alu 0 305 1 2516 166 86 91 chr3 114648382 114649314 -112875264 - L1MB2 LINE L1 -264 5907 4991 365 172 45 142 chr3 114649328 114649399 -112875179 - L1MB2 LINE L1 -7 6164 6110 2233 113 0 0 chr3 114649399 114649690 -112874888 - AluSx SINE Alu -21 291 1 365 172 45 142 chr3 114649690 114649752 -112874826 - L1MB2 LINE L1 -61 6110 6044 3418 200 40 50 chr3 114649757 114650036 -112874542 - L1MB2 LINE L1 -2867 3279 2999 1952 172 0 6 chr3 114650036 114650350 -112874228 + AluJo SINE Alu 1 312 0 3418 200 40 50 chr3 114650350 114650475 -112874103 - L1MB2 LINE L1 -3147 2999 2874 1689 179 7 3 chr3 114650475 114650765 -112873813 - AluJo SINE Alu -21 291 1 3418 200 40 50 chr3 114650765 114651362 -112873216 - L1MB2 LINE L1 -3272 2874 2285 1940 149 0 10 chr3 114651362 114651670 -112872908 - AluJb SINE Alu -7 305 1 3418 200 40 50 chr3 114651670 114651709 -112872869 - L1MB2 LINE L1 -3861 2285 2247 7252 132 30 30 chr3 114651723 114652161 -112872417 - L1PA14 LINE L1 -1 6160 5724 1977 135 28 0 chr3 114652161 114652450 -112872128 - AluSg SINE Alu -13 297 1 7252 132 30 30 chr3 114652450 114654171 -112870407 - L1PA14 LINE L1 -437 5724 4009 833 207 11 41 chr3 114654160 114654431 -112870147 - L1MEc LINE L1 -4026 2370 2108 * 1491 263 48 40 chr3 114654440 114654964 -112869614 - L1MEc LINE L1 -5834 562 35 1912 135 14 7 chr3 114656011 114656307 -112868271 + AluSq SINE Alu 1 298 -15 316 145 58 0 chr3 114656842 114656911 -112867667 - MLT1L LTR MaLR -353 262 190 362 231 67 19 chr3 114658078 114658182 -112866396 + MIR SINE MIR 2 110 -152 7134 15 1 0 chr3 114658200 114659001 -112865577 - L1PA2 LINE L1 -1 6154 5353 493 227 43 28 chr3 114659001 114659142 -112865436 + MIR SINE MIR 117 259 -3 734 139 0 26 chr3 114659155 114659270 -112865308 - FRAM SINE Alu -10 166 55 253 179 0 0 chr3 114659270 114659326 -112865252 + L1MC4 LINE L1 6648 6703 -1339 293 125 18 0 chr3 114659326 114659382 -112865196 + (TA)n Simple_repeat Simple_repeat 2 58 0 2070 131 0 35 chr3 114659382 114659695 -112864883 - AluSx SINE Alu -10 302 1 1572 199 3 17 chr3 114659710 114660012 -112864566 - AluJo SINE Alu -11 301 4 24 53 0 0 chr3 114660073 114660111 -112864467 + AT_rich Low_complexity Low_complexity 1 38 0 2256 109 3 0 chr3 114660195 114660499 -112864079 - AluSg SINE Alu -5 305 1 3505 239 75 4 chr3 114660573 114661645 -112862933 - L1MCa LINE L1 -2727 3699 2552 1803 170 3 3 chr3 114661657 114661945 -112862633 - L1MCa LINE L1 -5791 635 348 957 111 0 44 chr3 114663111 114663246 -112861332 + AluJo SINE Alu 1 129 -173 890 171 13 0 chr3 114663671 114663823 -112860755 + AluJo SINE Alu 137 290 -22 1861 174 0 0 chr3 114664397 114664691 -112859887 - AluJb SINE Alu -14 298 5 1244 153 0 14 chr3 114664712 114664928 -112859650 - L1MA4 LINE L1 -1 6299 6087 1139 234 101 70 chr3 114665743 114666208 -112858370 - L1MC4 LINE L1 -29 8013 7527 1834 149 0 39 chr3 114666208 114666516 -112858062 - AluSx SINE Alu -16 296 1 1139 234 101 70 chr3 114666516 114666596 -112857982 - L1MC4 LINE L1 -515 7527 7451 29 84 0 0 chr3 114666641 114666712 -112857866 + AT_rich Low_complexity Low_complexity 1 71 0 466 258 76 8 chr3 114666831 114666963 -112857615 + L2 LINE L2 3168 3308 -5 231 292 146 0 chr3 114667168 114667257 -112857321 - L2 LINE L2 -9 3263 3162 22 0 0 0 chr3 114667263 114667285 -112857293 + AT_rich Low_complexity Low_complexity 1 22 0 1892 157 0 13 chr3 114668086 114668386 -112856192 - AluJo SINE Alu -2 310 15 498 244 85 11 chr3 114668479 114668650 -112855928 - MER3 DNA MER1_type -6 203 1 768 215 10 5 chr3 114668783 114668946 -112855632 + MER5A DNA MER1_type 1 164 -25 735 249 63 41 chr3 114669229 114669498 -112855080 - Charlie8 DNA MER1_type -2141 276 2 522 0 0 0 chr3 114669595 114669653 -112854925 + (TA)n Simple_repeat Simple_repeat 2 59 0 1666 158 43 105 chr3 114670239 114670706 -112853872 - L1MD3 LINE L1 -753 7242 6805 2261 199 51 54 chr3 114671190 114671612 -112852966 + MLT1E3 LTR MaLR 1 422 -202 2052 102 36 7 chr3 114671612 114671915 -112852663 - AluSx SINE Alu 0 312 1 2261 199 51 54 chr3 114671915 114672116 -112852462 + MLT1E3 LTR MaLR 422 622 -2 260 285 42 49 chr3 114672145 114672289 -112852289 - MIR SINE MIR -10 252 110 2036 139 3 13 chr3 114672523 114672833 -112851745 - AluSx SINE Alu -5 307 1 27 0 0 0 chr3 114672998 114673025 -112851553 + AT_rich Low_complexity Low_complexity 1 27 0 256 248 59 98 chr3 114673230 114673328 -112851250 + MIR3 SINE MIR 57 148 -60 2589 55 3 0 chr3 114673328 114673635 -112850943 + AluY SINE Alu 1 308 -3 256 248 59 98 chr3 114673635 114673689 -112850889 + MIR3 SINE MIR 148 203 -5 24 32 0 0 chr3 114674504 114674535 -112850043 + AT_rich Low_complexity Low_complexity 1 31 0 681 252 133 22 chr3 114675644 114675870 -112848708 + MIR SINE MIR 10 260 -2 2221 108 0 14 chr3 114676375 114676510 -112848068 + AluSq SINE Alu 1 136 -177 2317 101 3 0 chr3 114676510 114676807 -112847771 + AluSc SINE Alu 1 298 -11 2221 108 0 14 chr3 114676807 114676966 -112847612 + AluSq SINE Alu 136 291 -22 2861 40 55 3 chr3 114677065 114677413 -112847165 - L1PA8 LINE L1 0 6172 5807 458 325 13 13 chr3 114677985 114678136 -112846442 + MIR3 SINE MIR 43 193 -15 1626 165 0 8 chr3 114678700 114678955 -112845623 - AluJo SINE Alu -28 284 32 270 0 0 0 chr3 114679509 114679539 -112845039 + (TA)n Simple_repeat Simple_repeat 1 30 0 333 0 0 0 chr3 114679825 114679862 -112844716 + (TA)n Simple_repeat Simple_repeat 2 38 0 2198 124 3 0 chr3 114679864 114680171 -112844407 - AluSx SINE Alu 0 312 5 298 325 18 35 chr3 114680214 114680328 -112844250 + L2 LINE L2 3153 3264 -8 1817 143 88 55 chr3 114680740 114681193 -112843385 - L1MA7 LINE L1 -1 6290 5823 5593 81 26 4 chr3 114681324 114682131 -112842447 + L1PA14 LINE L1 5334 6158 -3 207 0 0 0 chr3 114684048 114684071 -112840507 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 26 30 0 0 chr3 114684499 114684532 -112840046 + AT_rich Low_complexity Low_complexity 1 33 0 296 179 48 24 chr3 114684602 114684686 -112839892 + AluJ/FLAM SINE Alu 1 86 -216 4391 100 3 9 chr3 114684786 114685465 -112839113 - L1P LINE L1 -5457 689 15 832 172 0 8 chr3 114685475 114685609 -112838969 - FLAM_C SINE Alu 0 133 1 598 241 77 37 chr3 114685610 114685909 -112838669 - L1MC5 LINE L1 -143 7818 7508 282 250 106 0 chr3 114685978 114686082 -112838496 - MLT1F LTR MaLR -113 429 315 186 100 0 60 chr3 114686114 114686164 -112838414 + (TTTC)n Simple_repeat Simple_repeat 2 48 0 555 157 75 50 chr3 114686172 114686319 -112838259 - L1MC5 LINE L1 -500 7461 7308 630 185 147 32 chr3 114686319 114686476 -112838102 - FAM SINE Alu 0 175 1 555 157 75 50 chr3 114686476 114686487 -112838091 - L1MC5 LINE L1 -653 7308 7299 239 217 58 14 chr3 114687221 114687290 -112837288 - AluJo SINE Alu -7 295 224 796 251 49 0 chr3 114687290 114687453 -112837125 - AluJo SINE Alu -139 173 3 1995 152 7 0 chr3 114687481 114687778 -112836800 - AluSx SINE Alu -10 302 4 1702 159 0 45 chr3 114687791 114688100 -112836478 - AluJb SINE Alu -17 295 1 201 213 21 0 chr3 114688749 114688796 -112835782 + (TA)n Simple_repeat Simple_repeat 1 48 0 242 285 73 41 chr3 114689975 114690098 -112834480 + L2 LINE L2 3139 3265 -7 297 254 97 9 chr3 114690372 114690486 -112834092 - L2 LINE L2 -1206 2108 1985 190 333 67 0 chr3 114690804 114690894 -112833684 - MIR SINE MIR -42 220 125 2014 141 7 3 chr3 114690981 114691279 -112833299 - AluJb SINE Alu -13 299 1 1850 60 16 8 chr3 114691535 114691784 -112832794 - L1PA13 LINE L1 -1 6162 5912 2211 103 3 0 chr3 114693288 114693599 -112830979 + AluSq SINE Alu 1 312 0 198 0 0 0 chr3 114696416 114696438 -112828140 + (TG)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr3 114696845 114696867 -112827711 + AT_rich Low_complexity Low_complexity 1 22 0 3328 96 25 2 chr3 114696872 114697352 -112827226 - L1PA16 LINE L1 -10 6156 5666 1107 154 50 14 chr3 114697713 114697934 -112826644 + MER106A DNA MER1_type 1 229 -7 315 122 0 0 chr3 114698107 114698156 -112826422 + (TTCTCC)n Simple_repeat Simple_repeat 6 54 0 1752 159 4 4 chr3 114698164 114698441 -112826137 - AluSx SINE Alu 0 312 36 1465 135 9 117 chr3 114698441 114698773 -112825805 - AluJo SINE Alu -15 297 1 2971 161 65 18 chr3 114698830 114699431 -112825147 - L1MB3 LINE L1 -1 6182 5554 183 42 0 0 chr3 114700819 114700843 -112823735 + (CCCTG)n Simple_repeat Simple_repeat 2 25 0 223 105 0 92 chr3 114700847 114700923 -112823655 + (TTTCC)n Simple_repeat Simple_repeat 5 73 0 2128 91 0 0 chr3 114700923 114701197 -112823381 - AluSx SINE Alu -38 274 1 589 301 100 18 chr3 114701582 114701811 -112822767 - MIR SINE MIR 0 262 15 1977 139 36 31 chr3 114701943 114702331 -112822247 - MLT1B LTR MaLR 0 390 1 778 273 83 8 chr3 114702880 114703133 -112821445 + L2 LINE L2 3038 3309 -4 434 141 13 0 chr3 114703978 114704056 -112820522 + AluJ/FRAM SINE Alu 232 310 -2 493 294 94 0 chr3 114704739 114704919 -112819659 - MIR SINE MIR -6 256 60 654 158 69 37 chr3 114704974 114705176 -112819402 - MER58 DNA MER1_type 0 2420 1 336 322 11 11 chr3 114707972 114708062 -112816516 + L2 LINE L2 3156 3245 -27 21 0 0 0 chr3 114708196 114708217 -112816361 + AT_rich Low_complexity Low_complexity 1 21 0 1483 75 11 143 chr3 114708979 114709244 -112815334 - MER30 DNA MER1_type 0 230 1 22 70 0 0 chr3 114709528 114709571 -112815007 + AT_rich Low_complexity Low_complexity 1 43 0 6175 179 53 66 chr3 114709571 114709687 -112814891 - Charlie1 DNA MER1_type -227 2534 2418 1694 172 0 33 chr3 114709687 114709989 -112814589 + AluJo SINE Alu 1 292 -20 6175 179 53 66 chr3 114709989 114711519 -112813059 - Charlie1 DNA MER1_type -343 2418 909 2284 70 3 3 chr3 114711520 114711807 -112812771 + AluY SINE Alu 1 287 -24 2033 207 6 59 chr3 114711911 114712384 -112812194 - MER77 LTR ERV1 -157 448 1 1801 296 189 39 chr3 114712384 114713192 -112811386 - L2 LINE L2 -1417 1897 1212 1564 170 36 29 chr3 114713192 114713468 -112811110 - AluJo SINE Alu -24 288 11 1801 296 189 39 chr3 114713468 114713481 -112811097 - L2 LINE L2 -2102 1212 1202 2186 106 3 37 chr3 114713481 114713802 -112810776 - AluSq SINE Alu -1 312 3 1801 296 189 39 chr3 114713802 114714524 -112810054 - L2 LINE L2 -2112 1202 121 23 0 0 0 chr3 114714954 114714977 -112809601 + AT_rich Low_complexity Low_complexity 1 23 0 626 173 0 0 chr3 114715723 114715827 -112808751 - FLAM_C SINE Alu -5 138 35 255 275 46 8 chr3 114715914 114716045 -112808533 + L1ME4a LINE L1 5747 5882 -1926 512 198 55 0 chr3 114716056 114716147 -112808431 - FAM SINE Alu -89 96 1 228 234 16 0 chr3 114716170 114716234 -112808344 + L1ME4a LINE L1 5960 6024 -97 181 260 120 0 chr3 114716731 114716781 -112807797 + MIR SINE MIR 35 90 -118 1728 146 3 60 chr3 114716826 114716967 -112807611 + AluJo SINE Alu 5 152 -160 2380 94 3 0 chr3 114716967 114717266 -112807312 + AluSp SINE Alu 1 300 -13 1728 146 3 60 chr3 114717266 114717439 -112807139 + AluJo SINE Alu 152 301 -11 180 0 0 0 chr3 114719276 114719296 -112805282 + (TA)n Simple_repeat Simple_repeat 2 21 0 685 194 84 19 chr3 114719572 114719727 -112804851 - FRAM SINE Alu -1 165 1 24 32 0 0 chr3 114720551 114720582 -112803996 + AT_rich Low_complexity Low_complexity 1 31 0 485 252 59 7 chr3 114720778 114720913 -112803665 - MIR3 SINE MIR 0 208 67 805 147 0 8 chr3 114721191 114721320 -112803258 + FLAM_C SINE Alu 1 128 -5 1988 108 52 14 chr3 114721965 114722253 -112802325 - AluSx SINE Alu -13 299 1 2421 95 7 0 chr3 114722654 114722960 -112801618 - AluSc SINE Alu -1 308 1 21 36 0 0 chr3 114723662 114723690 -112800888 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 114723718 114723741 -112800837 + AT_rich Low_complexity Low_complexity 1 23 0 2220 124 0 10 chr3 114723797 114724104 -112800474 + AluSx SINE Alu 1 304 -8 249 238 95 0 chr3 114724108 114724192 -112800386 - L1MA10 LINE L1 -63 6271 6180 2141 192 61 67 chr3 114724221 114724783 -112799795 - L1ME1 LINE L1 -280 5886 5322 2224 124 0 0 chr3 114724783 114725081 -112799497 + AluSx SINE Alu 1 298 -14 2141 192 61 67 chr3 114725081 114725132 -112799446 - L1ME1 LINE L1 -844 5322 5272 2275 106 0 22 chr3 114725132 114725444 -112799134 + AluY SINE Alu 1 305 -6 2141 192 61 67 chr3 114725444 114726054 -112798524 - L1ME1 LINE L1 -894 5272 4643 2557 44 0 0 chr3 114726331 114726628 -112797950 + AluY SINE Alu 2 298 -13 4171 190 122 84 chr3 114726907 114728247 -112796331 + L1MD3 LINE L1 5888 7278 -717 717 208 8 0 chr3 114728247 114728377 -112796201 + MLT1F1 LTR MaLR 1 131 -436 876 219 116 19 chr3 114728377 114728592 -112795986 + L1MD3 LINE L1 7410 7645 -350 1989 109 0 0 chr3 114728592 114728857 -112795721 - AluSg SINE Alu -13 297 33 2020 141 0 26 chr3 114728957 114729262 -112795316 - AluJo SINE Alu -15 297 1 1575 202 21 12 chr3 114729268 114729599 -112794979 - Charlie1 DNA MER1_type -1846 915 582 1057 204 136 8 chr3 114729696 114729946 -112794632 - MLT1F LTR MaLR -76 466 185 3227 159 38 4 chr3 114730408 114730911 -112793667 - MLT2B1 LTR ERVL 0 520 1 2157 170 20 0 chr3 114731102 114731443 -112793135 - MER7A DNA MER2_type 0 346 1 23 68 0 0 chr3 114732796 114732840 -112791738 + GC_rich Low_complexity Low_complexity 1 44 0 27 29 0 0 chr3 114733398 114733432 -112791146 + GC_rich Low_complexity Low_complexity 1 34 0 345 303 74 8 chr3 114735991 114736113 -112788465 + L2 LINE L2 3184 3313 0 461 265 88 0 chr3 114737888 114738024 -112786554 + MIR SINE MIR 81 228 -34 2411 71 0 0 chr3 114739718 114740013 -112784565 - AluY SINE Alu -16 295 1 190 306 32 16 chr3 114740580 114740642 -112783936 - L2 LINE L2 -204 3068 3006 307 240 0 62 chr3 114741508 114741604 -112782974 + MIR SINE MIR 173 262 0 1785 162 17 0 chr3 114743872 114744168 -112780410 - AluJo SINE Alu -11 301 1 24 0 0 0 chr3 114744483 114744507 -112780071 + AT_rich Low_complexity Low_complexity 1 24 0 204 97 0 0 chr3 114745507 114745538 -112779040 + (TG)n Simple_repeat Simple_repeat 1 31 0 275 201 69 144 chr3 114745853 114746027 -112778551 + MER117 DNA MER1_type 7 167 -30 442 283 66 0 chr3 114746048 114746154 -112778424 + L2 LINE L2 3160 3272 0 310 321 9 47 chr3 114746746 114746852 -112777726 + L2 LINE L2 3163 3264 -8 2177 112 3 7 chr3 114747057 114747352 -112777226 - AluSx SINE Alu -18 294 1 411 270 119 44 chr3 114747507 114747666 -112776912 + MER5A DNA MER1_type 10 180 -9 1099 223 70 100 chr3 114747917 114748285 -112776293 - MLT1C LTR MaLR 0 467 89 1656 120 64 0 chr3 114748285 114748519 -112776059 - AluSx SINE Alu -63 249 1 2269 116 0 0 chr3 114748519 114748820 -112775758 - AluSx SINE Alu -11 301 1 1099 223 70 100 chr3 114748820 114748908 -112775670 - MLT1C LTR MaLR -376 91 24 413 141 272 0 chr3 114749020 114749112 -112775466 - L1MB1 LINE L1 -1 6167 6051 491 205 8 43 chr3 114750490 114750607 -112773971 + FRAM SINE Alu 1 110 -66 346 249 142 20 chr3 114750971 114751168 -112773410 - L1MC5 LINE L1 -36 7925 7705 318 167 22 22 chr3 114751676 114751766 -112772812 + CT-rich Low_complexity Low_complexity 4 93 0 232 132 0 38 chr3 114751767 114751820 -112772758 + (CCCCCT)n Simple_repeat Simple_repeat 6 56 0 1475 159 43 12 chr3 114751823 114752081 -112772497 - AluJo SINE Alu -38 274 9 2292 188 111 32 chr3 114752235 114752768 -112771810 + MLT1E2 LTR MaLR 52 626 0 2263 116 0 3 chr3 114752974 114753285 -112771293 - AluSg SINE Alu 0 310 1 1815 120 147 23 chr3 114753474 114753774 -112770804 - MER1B DNA MER1_type 0 337 1 3155 201 76 33 chr3 114754185 114754447 -112770131 - L1ME2 LINE L1 -35 6129 5880 2397 57 3 32 chr3 114754447 114754761 -112769817 - AluY SINE Alu -6 305 1 3155 201 76 33 chr3 114754761 114755406 -112769172 - L1ME2 LINE L1 -284 5880 5186 643 269 65 66 chr3 114755397 114755801 -112768777 - L1ME LINE L1 -4960 1224 895 * 2122 96 4 0 chr3 114755801 114756108 -112768470 + AluSp SINE Alu 13 320 0 643 269 65 66 chr3 114756108 114756338 -112768240 - L1ME LINE L1 -5289 895 666 2219 106 26 0 chr3 114756488 114756791 -112767787 + AluSq SINE Alu 1 311 -2 659 351 14 4 chr3 114757161 114757440 -112767138 - L1ME LINE L1 -6080 316 35 262 247 82 12 chr3 114757700 114757785 -112766793 - MIR SINE MIR 0 262 172 1408 175 0 0 chr3 114757853 114758070 -112766508 + AluJo SINE Alu 82 298 -14 434 290 130 0 chr3 114758343 114758474 -112766104 + L2 LINE L2 3165 3312 -1 593 192 66 77 chr3 114758573 114758755 -112765823 - L1ME1 LINE L1 -18 6148 5969 447 307 95 73 chr3 114759327 114759695 -112764883 + L2 LINE L2 2897 3272 0 439 333 0 43 chr3 114760707 114760869 -112763709 - MER5A DNA MER1_type 0 189 35 23 33 0 0 chr3 114761560 114761590 -112762988 + AT_rich Low_complexity Low_complexity 1 30 0 2008 138 17 0 chr3 114761968 114762264 -112762314 - AluSx SINE Alu -11 301 1 219 314 14 0 chr3 114762597 114762667 -112761911 + MIR SINE MIR 72 142 -120 23 0 0 0 chr3 114764035 114764058 -112760520 + AT_rich Low_complexity Low_complexity 1 23 0 1691 165 14 21 chr3 114764468 114764759 -112759819 - AluJo SINE Alu -22 290 2 311 161 71 0 chr3 114764926 114764982 -112759596 - MARNA DNA Mariner -20 566 507 2160 79 17 7 chr3 114765060 114765376 -112759202 - AluY SINE Alu 0 311 1 931 167 0 0 chr3 114766140 114766272 -112758306 - FLAM_C SINE Alu -1 132 1 1684 256 134 10 chr3 114766448 114766924 -112757654 + MLT1G1 LTR MaLR 55 590 -5 299 287 56 0 chr3 114767081 114767189 -112757389 + MIR SINE MIR 41 154 -108 246 343 66 82 chr3 114767224 114767589 -112756989 - L2 LINE L2 0 3272 2914 250 306 57 102 chr3 114767625 114767997 -112756581 - L2 LINE L2 -459 2855 2501 7625 53 11 11 chr3 114769143 114770257 -112754321 - L1PA6 LINE L1 0 6154 5042 21 0 0 0 chr3 114770745 114770766 -112753812 + AT_rich Low_complexity Low_complexity 1 21 0 1994 142 10 7 chr3 114770770 114771080 -112753498 - AluJo SINE Alu -1 311 1 194 313 100 0 chr3 114771463 114771543 -112753035 - L3 LINE CR1 -213 1364 1277 1210 206 87 7 chr3 114772767 114773044 -112751534 + AluJo SINE Alu 14 312 0 374 302 57 31 chr3 114773155 114773314 -112751264 + MER5B DNA MER1_type 16 178 0 2305 102 3 0 chr3 114773362 114773657 -112750921 - AluSx SINE Alu -14 298 3 262 292 93 40 chr3 114773722 114773948 -112750630 - L2 LINE L2 -1206 2108 1871 2225 123 0 0 chr3 114774013 114774313 -112750265 + AluSg SINE Alu 1 300 -10 1269 157 59 4 chr3 114774359 114774757 -112749821 - LTR54 LTR ERV1 0 510 8 22 35 0 0 chr3 114774780 114774809 -112749769 + AT_rich Low_complexity Low_complexity 1 29 0 198 0 0 0 chr3 114774829 114774851 -112749727 + (TG)n Simple_repeat Simple_repeat 2 23 0 630 135 43 0 chr3 114774865 114775006 -112749572 + (TATATG)n Simple_repeat Simple_repeat 4 150 0 277 159 14 43 chr3 114775006 114775075 -112749503 - LTR57-int LTR ERVL -4394 949 883 252 162 91 61 chr3 114775091 114775190 -112749388 - LTR57-int LTR ERVL -4362 981 880 412 206 56 0 chr3 114775218 114775378 -112749200 + (TATATG)n Simple_repeat Simple_repeat 3 171 0 250 191 0 48 chr3 114775387 114775450 -112749128 + L1MCa LINE L1 2006 2065 -4361 495 121 60 0 chr3 114775453 114775569 -112749009 + (TATATG)n Simple_repeat Simple_repeat 1 123 0 198 317 57 81 chr3 114775572 114775818 -112748760 - L2 LINE L2 -1698 1616 1377 313 321 9 47 chr3 114976575 114976681 -112547897 - L2 LINE L2 -8 3264 3163 443 283 66 0 chr3 114977273 114977379 -112547199 - L2 LINE L2 0 3272 3160 235 250 98 9 chr3 114977462 114977574 -112547004 - MER117 DNA MER1_type -69 128 7 186 103 0 0 chr3 114977889 114977918 -112546660 + (CA)n Simple_repeat Simple_repeat 1 29 0 25 0 0 0 chr3 114978918 114978943 -112545635 + AT_rich Low_complexity Low_complexity 1 25 0 1787 166 17 0 chr3 114979256 114979552 -112545026 + AluJo SINE Alu 1 301 -11 314 240 0 62 chr3 114981818 114981914 -112542664 - MIR SINE MIR 0 262 173 190 306 32 16 chr3 114982757 114982819 -112541759 + L2 LINE L2 3006 3068 -204 2394 71 0 0 chr3 114983383 114983678 -112540900 + AluY SINE Alu 1 295 -16 474 265 88 0 chr3 114985371 114985507 -112539071 - MIR SINE MIR -34 228 81 346 303 74 8 chr3 114987281 114987403 -112537175 - L2 LINE L2 0 3313 3184 369 295 116 97 chr3 114989545 114990315 -112534263 - L1M2 LINE L1 -5537 1312 529 325 290 137 81 chr3 114989922 114990587 -112533991 + L1M2 LINE L1 677 1378 -5471 * 557 178 0 0 chr3 114990760 114990867 -112533711 - L1MA4 LINE L1 -107 6193 6087 923 234 101 70 chr3 114991683 114992148 -112532430 - L1MC4 LINE L1 -29 8013 7527 1822 153 0 39 chr3 114992148 114992456 -112532122 - AluSx SINE Alu -16 296 1 923 234 101 70 chr3 114992456 114992536 -112532042 - L1MC4 LINE L1 -515 7527 7451 27 49 0 0 chr3 114992581 114992622 -112531956 + AT_rich Low_complexity Low_complexity 1 41 0 472 258 76 8 chr3 114992770 114992902 -112531676 + L2 LINE L2 3168 3308 -5 233 303 135 0 chr3 114993107 114993196 -112531382 - L2 LINE L2 -10 3262 3162 22 0 0 0 chr3 114993202 114993224 -112531354 + AT_rich Low_complexity Low_complexity 1 22 0 1915 157 0 13 chr3 114994025 114994325 -112530253 - AluJo SINE Alu -2 310 15 448 219 123 0 chr3 114994418 114994532 -112530046 - MER3 DNA MER1_type -6 203 76 768 215 10 5 chr3 114994722 114994885 -112529693 + MER5A DNA MER1_type 1 164 -25 635 253 63 41 chr3 114995168 114995437 -112529141 - Charlie8 DNA MER1_type -2141 276 2 342 0 0 0 chr3 114995534 114995572 -112529006 + (TA)n Simple_repeat Simple_repeat 2 39 0 1475 163 43 105 chr3 114996159 114996626 -112527952 - L1MD3 LINE L1 -753 7242 6805 487 249 83 17 chr3 114997110 114997466 -112527112 + MLT1E1 LTR MaLR 1 374 -250 757 216 31 40 chr3 114997879 114997904 -112526674 + MLT1E1 LTR MaLR 428 452 -202 2022 98 36 19 chr3 114997904 114998211 -112526367 - AluSx SINE Alu 0 312 1 757 216 31 40 chr3 114998211 114998412 -112526166 + MLT1E1 LTR MaLR 452 652 -2 293 269 41 55 chr3 114998441 114998586 -112525992 - MIR SINE MIR -10 252 110 2051 139 3 13 chr3 114998820 114999129 -112525449 - AluSx SINE Alu -6 306 1 27 0 0 0 chr3 114999294 114999321 -112525257 + AT_rich Low_complexity Low_complexity 1 27 0 280 242 59 98 chr3 114999526 114999624 -112524954 + MIR3 SINE MIR 57 148 -60 2598 55 3 0 chr3 114999624 114999934 -112524644 + AluY SINE Alu 1 311 0 280 242 59 98 chr3 114999934 114999988 -112524590 + MIR3 SINE MIR 148 203 -5 24 32 0 0 chr3 115000803 115000834 -112523744 + AT_rich Low_complexity Low_complexity 1 31 0 643 261 133 22 chr3 115001945 115002171 -112522407 + MIR SINE MIR 10 260 -2 2212 112 0 14 chr3 115002676 115002811 -112521767 + AluSq SINE Alu 1 136 -177 2328 98 3 0 chr3 115002811 115003108 -112521470 + AluSc SINE Alu 1 298 -11 2212 112 0 14 chr3 115003108 115003267 -112521311 + AluSq SINE Alu 136 291 -22 2675 40 55 3 chr3 115003366 115003714 -112520864 - L1PA8 LINE L1 0 6172 5807 458 325 13 13 chr3 115004286 115004437 -112520141 + MIR3 SINE MIR 43 193 -15 22 0 0 0 chr3 115005221 115005243 -112519335 + GC_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 115005243 115005264 -112519314 + AT_rich Low_complexity Low_complexity 1 21 0 351 0 0 0 chr3 115005891 115005930 -112518648 + (TA)n Simple_repeat Simple_repeat 2 40 0 2169 128 3 0 chr3 115005930 115006236 -112518342 - AluSx SINE Alu -1 311 5 298 325 18 35 chr3 115006279 115006393 -112518185 + L2 LINE L2 3153 3264 -8 1903 137 86 55 chr3 115006805 115007259 -112517319 - L1MA7 LINE L1 -1 6290 5823 5568 82 26 4 chr3 115007390 115008197 -112516381 + L1PA14 LINE L1 5334 6158 -3 207 0 0 0 chr3 115010114 115010137 -112514441 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 26 30 0 0 chr3 115010565 115010598 -112513980 + AT_rich Low_complexity Low_complexity 1 33 0 1884 159 7 0 chr3 115010668 115010964 -112513614 + AluJb SINE Alu 1 298 -14 853 184 13 0 chr3 115011538 115011690 -112512888 - FRAM SINE Alu -22 154 1 1985 170 20 0 chr3 115013198 115013539 -112511039 + MER7A DNA MER2_type 1 346 0 2986 159 38 4 chr3 115013730 115014233 -112510345 + MLT2B1 LTR ERVL 1 520 0 955 206 133 8 chr3 115014697 115014945 -112509633 + MLT1F LTR MaLR 188 466 -76 662 239 6 17 chr3 115015042 115015222 -112509356 + Charlie1 DNA MER1_type 582 759 -2002 1369 92 5 5 chr3 115015360 115015544 -112509034 - AluY SINE Alu -127 184 1 6145 180 53 66 chr3 115015545 115017076 -112507502 + Charlie1 DNA MER1_type 909 2418 -343 1694 172 0 33 chr3 115017076 115017378 -112507200 - AluJo SINE Alu -20 292 1 6145 180 53 66 chr3 115017378 115017494 -112507084 + Charlie1 DNA MER1_type 2418 2534 -227 23 68 0 0 chr3 115017494 115017538 -112507040 + AT_rich Low_complexity Low_complexity 1 44 0 1452 79 11 143 chr3 115017822 115018087 -112506491 + MER30 DNA MER1_type 1 230 0 878 122 0 0 chr3 115019164 115019279 -112505299 + FLAM_C SINE Alu 1 115 -18 2180 112 3 7 chr3 115019808 115020103 -112504475 - AluSx SINE Alu -18 294 1 417 270 119 44 chr3 115020258 115020417 -112504161 + MER5A DNA MER1_type 10 180 -9 854 231 72 103 chr3 115020668 115021036 -112503542 - MLT1C LTR MaLR 0 467 89 1659 120 64 0 chr3 115021036 115021270 -112503308 - AluSx SINE Alu -63 249 1 2281 116 0 0 chr3 115021270 115021571 -112503007 - AluSx SINE Alu -11 301 1 854 231 72 103 chr3 115021571 115021659 -112502919 - MLT1C LTR MaLR -376 91 24 364 141 272 0 chr3 115021771 115021863 -112502715 - L1MB1 LINE L1 -1 6167 6051 453 205 8 43 chr3 115023240 115023357 -112501221 + FRAM SINE Alu 1 110 -66 262 207 52 35 chr3 115023721 115023837 -112500741 - L1MC5 LINE L1 -36 7925 7808 318 167 22 22 chr3 115024426 115024516 -112500062 + CT-rich Low_complexity Low_complexity 4 93 0 232 132 0 38 chr3 115024517 115024570 -112500008 + (CCCCCT)n Simple_repeat Simple_repeat 6 56 0 1485 159 43 12 chr3 115024573 115024831 -112499747 - AluJo SINE Alu -38 274 9 2021 191 111 32 chr3 115024984 115025517 -112499061 + MLT1E2 LTR MaLR 52 626 0 2269 116 0 3 chr3 115025723 115026034 -112498544 - AluSg SINE Alu 0 310 1 1688 106 8 19 chr3 115026223 115026487 -112498091 - MER1B DNA MER1_type 0 339 79 2782 203 76 32 chr3 115026934 115027195 -112497383 - L1ME2 LINE L1 -35 6129 5881 2374 58 3 29 chr3 115027195 115027507 -112497071 - AluY SINE Alu -7 304 1 2782 203 76 32 chr3 115027507 115028152 -112496426 - L1ME2 LINE L1 -283 5881 5186 506 261 69 63 chr3 115028145 115028546 -112496032 - L1ME LINE L1 -4962 1229 893 * 2132 96 4 0 chr3 115028546 115028855 -112495723 + AluSp SINE Alu 13 322 0 506 261 69 63 chr3 115028855 115029085 -112495493 - L1ME LINE L1 -5298 893 666 2196 103 36 0 chr3 115029235 115029537 -112495041 + AluSq SINE Alu 1 313 0 586 351 14 4 chr3 115029908 115030187 -112494391 - L1ME LINE L1 -6080 316 35 191 247 82 12 chr3 115030447 115030532 -112494046 - MIR SINE MIR 0 262 172 1432 175 0 0 chr3 115030600 115030817 -112493761 + AluJo SINE Alu 82 298 -14 441 290 130 0 chr3 115031094 115031225 -112493353 + L2 LINE L2 3165 3312 -1 523 190 67 78 chr3 115031327 115031506 -112493072 - L1ME1 LINE L1 -21 6145 5969 473 307 95 73 chr3 115032078 115032446 -112492132 + L2 LINE L2 2897 3272 0 455 333 0 43 chr3 115033458 115033620 -112490958 - MER5A DNA MER1_type 0 189 35 23 33 0 0 chr3 115034311 115034341 -112490237 + AT_rich Low_complexity Low_complexity 1 30 0 2020 138 17 0 chr3 115034719 115035015 -112489563 - AluSx SINE Alu -11 301 1 223 314 14 0 chr3 115035348 115035418 -112489160 + MIR SINE MIR 72 142 -120 23 0 0 0 chr3 115036787 115036810 -112487768 + AT_rich Low_complexity Low_complexity 1 23 0 1703 165 14 21 chr3 115037220 115037511 -112487067 - AluJo SINE Alu -22 290 2 283 161 71 0 chr3 115037678 115037734 -112486844 - MARNA DNA Mariner -20 566 507 2144 79 17 7 chr3 115037812 115038128 -112486450 - AluY SINE Alu 0 311 1 877 167 0 0 chr3 115038892 115039024 -112485554 - FLAM_C SINE Alu -1 132 1 1487 281 152 2 chr3 115039200 115039666 -112484912 + MLT1G1 LTR MaLR 55 590 -5 299 287 56 0 chr3 115039833 115039941 -112484637 + MIR SINE MIR 41 154 -108 287 328 60 91 chr3 115039976 115040749 -112483829 - L2 LINE L2 0 3272 2501 7132 53 17 0 chr3 115041895 115042997 -112481581 - L1PA6 LINE L1 0 6154 5048 1940 147 10 10 chr3 115043528 115043840 -112480738 - AluJo SINE Alu 0 312 1 1263 202 87 7 chr3 115045528 115045805 -112478773 + AluJo SINE Alu 14 312 0 383 302 57 31 chr3 115045916 115046075 -112478503 + MER5B DNA MER1_type 16 178 0 2308 102 3 0 chr3 115046123 115046418 -112478160 - AluSx SINE Alu -14 298 3 267 292 93 40 chr3 115046483 115046709 -112477869 - L2 LINE L2 -1206 2108 1871 2225 127 0 0 chr3 115046774 115047074 -112477504 + AluSg SINE Alu 1 300 -10 1154 156 59 3 chr3 115047120 115047518 -112477060 - LTR54 LTR ERV1 0 510 8 22 35 0 0 chr3 115047541 115047570 -112477008 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr3 115047590 115047610 -112476968 + (TG)n Simple_repeat Simple_repeat 2 21 0 657 132 42 0 chr3 115047624 115047768 -112476810 + (TATATG)n Simple_repeat Simple_repeat 1 150 0 256 143 0 48 chr3 115047771 115047834 -112476744 - LTR57-int LTR ERVL -4401 942 883 615 189 56 10 chr3 115047834 115048322 -112476256 + (TATATG)n Simple_repeat Simple_repeat 1 510 0 200 317 57 81 chr3 115048325 115048571 -112476007 - L2 LINE L2 -1698 1616 1377 4356 129 35 52 chr3 115049407 115049995 -112474583 - L1MB2 LINE L1 -4 6167 5591 2473 49 7 13 chr3 115049995 115050300 -112474278 - AluY SINE Alu -8 303 1 4356 129 35 52 chr3 115050300 115050616 -112473962 - L1MB2 LINE L1 -580 5591 5271 1529 170 134 36 chr3 115051749 115052108 -112472470 + MSTD LTR MaLR 1 394 -2 1837 173 3 13 chr3 115052113 115052426 -112472152 - AluJo SINE Alu -2 310 1 1607 129 0 0 chr3 115052456 115052696 -112471882 - L1PB1 LINE L1 -2 6149 5910 456 221 63 55 chr3 115052724 115052851 -112471727 - FRAM SINE Alu -28 148 21 1219 194 110 22 chr3 115053036 115053355 -112471223 - L1MB8 LINE L1 -1 6177 5831 303 233 0 0 chr3 115053412 115053472 -112471106 - L1MB8 LINE L1 -1142 5004 4945 487 186 0 0 chr3 115053485 115053571 -112471007 - Tigger5 DNA MER2_type -1 2322 2237 2736 173 24 32 chr3 115053614 115053731 -112470847 - L1ME1 LINE L1 -334 5832 5716 1874 133 72 33 chr3 115053731 115054091 -112470487 - THE1C LTR MaLR -1 374 1 2736 173 24 32 chr3 115054091 115054388 -112470190 - L1ME1 LINE L1 -450 5716 5426 1960 167 13 0 chr3 115054388 115054688 -112469890 + AluJb SINE Alu 1 304 -8 2736 173 24 32 chr3 115054688 115054974 -112469604 - L1ME1 LINE L1 -740 5426 5139 400 234 0 13 chr3 115054979 115055098 -112469480 - L1ME1 LINE L1 -1143 5003 4890 631 126 0 10 chr3 115057109 115057212 -112467366 + MER67D LTR ERV1 1 102 -412 1528 186 51 72 chr3 115057265 115057695 -112466883 + MER67D LTR ERV1 90 510 -4 270 56 0 0 chr3 115057942 115057978 -112466600 + (CA)n Simple_repeat Simple_repeat 2 37 0 621 251 46 80 chr3 115057990 115058229 -112466349 - MIR SINE MIR -14 248 18 21 0 0 0 chr3 115059403 115059424 -112465154 + AT_rich Low_complexity Low_complexity 1 21 0 251 223 107 18 chr3 115059448 115059560 -112465018 - L1ME4a LINE L1 -36 6085 5964 515 274 132 39 chr3 115059963 115060167 -112464411 + MIR SINE MIR 40 262 0 2055 142 13 7 chr3 115060376 115060686 -112463892 - AluSx SINE Alu 0 312 1 4245 61 27 22 chr3 115061003 115061589 -112462989 - L1PA7 LINE L1 0 6154 5566 2471 58 0 0 chr3 115061594 115061887 -112462691 - AluY SINE Alu -18 293 1 30355 111 14 48 chr3 115061892 115067095 -112457483 - L1PA7 LINE L1 0 6154 1215 231 61 0 0 chr3 115067095 115067128 -112457450 + (TTG)n Simple_repeat Simple_repeat 1 33 0 30355 111 14 48 chr3 115067128 115068304 -112456274 - L1PA7 LINE L1 -4939 1215 1 189 0 0 0 chr3 115068363 115068384 -112456194 + (A)n Simple_repeat Simple_repeat 1 21 0 26 74 0 0 chr3 115068384 115068438 -112456140 + AT_rich Low_complexity Low_complexity 1 54 0 1957 169 0 13 chr3 115068566 115068879 -112455699 + AluJb SINE Alu 1 309 -3 465 319 147 0 chr3 115069015 115069172 -112455406 + MER5A DNA MER1_type 9 188 -1 511 234 147 6 chr3 115069818 115069978 -112454600 - MER5A DNA MER1_type 0 189 4 410 221 134 16 chr3 115070039 115070166 -112454412 + L2 LINE L2 3172 3313 0 192 349 16 0 chr3 115070188 115070251 -112454327 - MIR SINE MIR -150 112 49 1158 278 100 20 chr3 115070337 115070887 -112453691 - L1ME3A LINE L1 -7 6163 5570 1652 162 54 6 chr3 115070887 115071866 -112452712 - L1MA9 LINE L1 -2 6310 5078 36 62 0 0 chr3 115071923 115071987 -112452591 + AT_rich Low_complexity Low_complexity 1 64 0 695 191 8 0 chr3 115071989 115072115 -112452463 - FLAM_A SINE Alu -6 127 1 4244 125 19 1 chr3 115072123 115072820 -112451758 - L1MA5A LINE L1 -5 6292 5584 3408 259 67 73 chr3 115072915 115074188 -112450390 + HAL1 LINE L1 1 1261 -1246 1992 113 25 103 chr3 115074188 115074595 -112449983 + THE1C LTR MaLR 1 375 0 3408 259 67 73 chr3 115074595 115075108 -112449470 + HAL1 LINE L1 1261 1776 -731 1338 167 9 0 chr3 115075116 115075331 -112449247 + AluJb SINE Alu 12 228 -84 267 321 79 14 chr3 115075363 115075503 -112449075 + HAL1 LINE L1 1758 1906 -601 19664 93 12 18 chr3 115075519 115081952 -112442626 - L1PA7 LINE L1 0 6469 3 1091 221 15 115 chr3 115081955 115082502 -112442076 + HAL1 LINE L1 1903 2394 -113 2503 59 0 3 chr3 115082545 115082851 -112441727 + AluY SINE Alu 1 305 -6 746 231 5 46 chr3 115083592 115083787 -112440791 - MER5A DNA MER1_type 0 189 3 2354 82 3 0 chr3 115083899 115084190 -112440388 + AluSg SINE Alu 1 292 -18 280 294 20 14 chr3 115084394 115084540 -112440038 - L1P LINE L1 -2412 3734 3588 2086 142 0 3 chr3 115084902 115085205 -112439373 - AluSx SINE Alu -10 302 1 1579 251 65 45 chr3 115085214 115085765 -112438813 + MLT1G LTR MaLR 29 590 0 22 35 0 0 chr3 115086222 115086251 -112438327 + AT_rich Low_complexity Low_complexity 1 29 0 1649 176 14 21 chr3 115086251 115086540 -112438038 - AluJo SINE Alu -25 287 1 2201 97 10 19 chr3 115086789 115087099 -112437479 - AluSp SINE Alu -6 307 1 331 324 57 0 chr3 115087481 115087586 -112436992 + L2 LINE L2 3203 3313 0 189 107 0 0 chr3 115087854 115087882 -112436696 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 1945 176 0 0 chr3 115087981 115088288 -112436290 + AluJo SINE Alu 1 307 -5 213 39 0 0 chr3 115088573 115088599 -112435979 + (TG)n Simple_repeat Simple_repeat 1 26 0 622 267 100 55 chr3 115089205 115089625 -112434953 + L2 LINE L2 2622 3064 -249 207 100 0 0 chr3 115089782 115089812 -112434766 + (TGAA)n Simple_repeat Simple_repeat 2 31 0 209 274 14 14 chr3 115089934 115090007 -112434571 + GA-rich Low_complexity Low_complexity 2 74 0 2340 96 0 0 chr3 115090117 115090418 -112434160 + AluSx SINE Alu 1 301 -11 248 270 59 33 chr3 115090435 115090587 -112433991 + Tigger7 DNA MER2_type 1559 1714 -773 2310 106 3 0 chr3 115090838 115091140 -112433438 + AluSp SINE Alu 1 303 -10 3772 70 14 6 chr3 115091317 115091829 -112432749 + L1PA7 LINE L1 5639 6154 0 2055 142 13 7 chr3 115092146 115092456 -112432122 + AluSx SINE Alu 1 312 0 511 271 138 39 chr3 115092665 115092868 -112431710 - MIR SINE MIR 0 262 40 636 75 0 0 chr3 115093462 115093542 -112431036 - AluS SINE Alu -230 82 3 520 314 41 6 chr3 115093545 115093714 -112430864 + MIR SINE MIR 88 262 0 653 294 99 30 chr3 115094015 115094409 -112430169 - LTR16B LTR ERVL 0 464 44 744 178 0 0 chr3 115095661 115095779 -112428799 + FLAM_C SINE Alu 1 118 -25 221 274 14 41 chr3 115095998 115096071 -112428507 - MIR SINE MIR -180 82 12 1608 156 54 104 chr3 115096156 115096637 -112427941 + MLT1C LTR MaLR 6 462 -5 370 254 40 17 chr3 115097155 115097332 -112427246 + L1M4 LINE L1 2132 2312 -3834 1075 303 40 34 chr3 115097349 115097395 -112427183 - LTR16C LTR ERVL -12 479 435 2450 138 20 54 chr3 115097395 115097838 -112426740 - MSTC LTR MaLR 0 428 1 1075 303 40 34 chr3 115097838 115098267 -112426311 - LTR16C LTR ERVL -56 435 1 835 250 5 0 chr3 115098325 115098525 -112426053 - L1PB4 LINE L1 -1 6155 5955 * 1176 219 35 0 chr3 115098508 115098819 -112425759 - L1PB4 LINE L1 -925 5221 4900 1033 265 111 3 chr3 115098824 115099408 -112425170 + L1M4 LINE L1 2387 3033 -3113 370 354 50 20 chr3 115099408 115099606 -112424972 + MIR SINE MIR 56 259 -3 956 200 0 0 chr3 115100134 115100299 -112424279 - FRAM SINE Alu -1 165 1 185 287 170 21 chr3 115100299 115100393 -112424185 - MIR SINE MIR -55 153 46 1992 169 18 110 chr3 115100507 115100856 -112423722 - MLT1D LTR MaLR 0 505 223 2026 114 40 0 chr3 115100856 115101176 -112423402 - AluSq SINE Alu 0 331 1 1992 169 18 110 chr3 115101176 115101381 -112423197 - MLT1D LTR MaLR -282 223 1 273 244 45 82 chr3 115101535 115101776 -112422802 + L1MC4 LINE L1 7548 7882 -160 2173 147 30 2 chr3 115101776 115102177 -112422401 + L1MA7 LINE L1 5874 6285 -6 273 244 45 82 chr3 115102177 115102268 -112422310 + L1MC4 LINE L1 7882 7975 -67 59 15 0 0 chr3 115102291 115102357 -112422221 + AT_rich Low_complexity Low_complexity 1 66 0 198 103 0 0 chr3 115103126 115103155 -112421423 + (TAGA)n Simple_repeat Simple_repeat 2 30 0 900 154 45 0 chr3 115103809 115103965 -112420613 - L1PA16 LINE L1 -9 6157 5995 665 104 47 9 chr3 115103989 115104095 -112420483 - HY1 scRNA scRNA -1 111 2 4245 159 30 42 chr3 115104149 115104936 -112419642 + L1MB4 LINE L1 5072 5842 -338 1789 142 8 4 chr3 115104936 115105204 -112419374 + AluJb SINE Alu 27 295 -17 4245 159 30 42 chr3 115105204 115105539 -112419039 + L1MB4 LINE L1 5842 6180 0 213 288 45 0 chr3 115105741 115105807 -112418771 - MIR SINE MIR -16 246 178 183 250 0 67 chr3 115106375 115106435 -112418143 - L3b LINE CR1 -356 1227 1172 369 250 9 103 chr3 115106470 115106540 -112418038 + MIR SINE MIR 39 95 -167 2150 108 0 0 chr3 115106540 115106853 -112417725 - AluSc SINE Alu 0 309 1 369 250 9 103 chr3 115106853 115106898 -112417680 + MIR SINE MIR 95 143 -119 937 272 13 0 chr3 115106924 115107159 -112417419 + MIR SINE MIR 23 260 -2 252 156 78 39 chr3 115107748 115107825 -112416753 + (CCCTG)n Simple_repeat Simple_repeat 1 80 0 1897 153 0 14 chr3 115109166 115109461 -112415117 + AluJb SINE Alu 5 295 -17 472 284 90 54 chr3 115109569 115109846 -112414732 - LTR16A LTR ERVL -4 453 146 2421 117 28 14 chr3 115109846 115110205 -112414373 - THE1B LTR MaLR 0 364 1 472 284 90 54 chr3 115110205 115110341 -112414237 - LTR16A LTR ERVL -311 146 16 4130 14 14 2 chr3 115111180 115111663 -112412915 + L1PA2 LINE L1 5667 6155 0 439 276 71 62 chr3 115111663 115111873 -112412705 + MIR SINE MIR 13 224 -38 287 171 124 62 chr3 115112233 115112325 -112412253 - Charlie2a DNA MER1_type -1850 1012 908 2180 98 3 14 chr3 115112325 115112620 -112411958 + AluSx SINE Alu 1 292 -20 287 171 124 62 chr3 115112620 115112656 -112411922 - Charlie2a DNA MER1_type -1954 908 876 356 350 57 13 chr3 115114045 115114202 -112410376 - MIR3 SINE MIR -5 203 40 208 252 28 84 chr3 115114187 115114294 -112410284 + MIR SINE MIR 102 202 -60 * 362 251 49 68 chr3 115114381 115114544 -112410034 + MIR SINE MIR 47 206 -56 200 109 0 65 chr3 115114629 115114675 -112409903 + (A)n Simple_repeat Simple_repeat 1 43 0 652 197 53 43 chr3 115114693 115114901 -112409677 - L1M4 LINE L1 -689 5495 5286 21 0 0 0 chr3 115115611 115115632 -112408946 + AT_rich Low_complexity Low_complexity 1 21 0 336 322 11 11 chr3 115115766 115115856 -112408722 - L2 LINE L2 -27 3245 3156 654 158 69 37 chr3 115118652 115118854 -112405724 + MER58 DNA MER1_type 1 2420 0 493 294 94 0 chr3 115118909 115119089 -112405489 + MIR SINE MIR 60 256 -6 438 139 13 0 chr3 115119772 115119851 -112404727 - AluJ/FRAM SINE Alu -1 311 232 778 273 83 8 chr3 115120696 115120949 -112403629 - L2 LINE L2 -4 3309 3038 1947 139 36 33 chr3 115121498 115121887 -112402691 + MLT1B LTR MaLR 1 390 0 469 322 100 22 chr3 115122021 115122251 -112402327 + MIR SINE MIR 15 262 0 2128 91 0 0 chr3 115122636 115122910 -112401668 + AluSx SINE Alu 1 274 -38 223 105 0 92 chr3 115122910 115122986 -112401592 + (GGAAA)n Simple_repeat Simple_repeat 5 73 0 183 42 0 0 chr3 115122990 115123014 -112401564 + (CAGGG)n Simple_repeat Simple_repeat 2 25 0 2956 163 65 18 chr3 115124402 115125003 -112399575 + L1MB3 LINE L1 5554 6182 -1 1465 135 9 117 chr3 115125060 115125393 -112399185 + AluJo SINE Alu 1 297 -15 1766 155 4 4 chr3 115125393 115125669 -112398909 + AluSx SINE Alu 36 312 0 315 122 0 0 chr3 115125677 115125726 -112398852 + (GGAGAA)n Simple_repeat Simple_repeat 6 54 0 1107 154 50 14 chr3 115125899 115126120 -112398458 - MER106A DNA MER1_type -7 229 1 3328 96 25 2 chr3 115126481 115126961 -112397617 + L1PA16 LINE L1 5666 6156 -10 22 0 0 0 chr3 115126966 115126988 -112397590 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr3 115127395 115127417 -112397161 + (CA)n Simple_repeat Simple_repeat 1 22 0 2210 103 3 0 chr3 115130234 115130545 -112394033 - AluSq SINE Alu 0 312 1 1850 60 16 8 chr3 115132051 115132300 -112392278 + L1PA13 LINE L1 5912 6162 -1 2014 141 7 3 chr3 115132556 115132854 -112391724 + AluJb SINE Alu 1 299 -13 190 333 67 0 chr3 115132941 115133031 -112391547 + MIR SINE MIR 125 220 -42 180 0 0 0 chr3 115133175 115133195 -112391383 + (T)n Simple_repeat Simple_repeat 1 20 0 48 0 0 0 chr3 115133499 115133547 -112391031 + AT_rich Low_complexity Low_complexity 1 48 0 344 281 84 18 chr3 115133987 115134154 -112390424 - L1M4 LINE L1 -850 5296 5119 530 162 54 27 chr3 115135190 115135327 -112389251 + FLAM_A SINE Alu 8 142 0 22 35 0 0 chr3 115135349 115135378 -112389200 + AT_rich Low_complexity Low_complexity 1 29 0 1774 161 0 24 chr3 115136822 115137157 -112387421 + MER47A DNA MER2_type 40 366 0 483 328 23 12 chr3 115138730 115138901 -112385677 - MIR SINE MIR -70 192 20 182 369 118 36 chr3 115138961 115139824 -112384754 - L2 LINE L2 -825 2489 1556 22 0 0 0 chr3 115140486 115140508 -112384070 + AT_rich Low_complexity Low_complexity 1 22 0 485 286 103 16 chr3 115140552 115140737 -112383841 - MIR SINE MIR -58 204 4 240 306 94 0 chr3 115141272 115141357 -112383221 - L2 LINE L2 -88 3184 3092 2509 84 3 0 chr3 115141598 115141909 -112382669 - AluSp SINE Alu -1 312 1 2826 3 0 0 chr3 115143164 115143469 -112381109 + AluYa5 SINE Alu 1 305 -6 674 177 20 0 chr3 115143678 115143825 -112380753 + L1M4 LINE L1 3270 3419 -2727 2255 109 3 0 chr3 115143899 115144203 -112380375 + AluSg SINE Alu 1 305 -5 24 53 0 0 chr3 115144287 115144325 -112380253 + AT_rich Low_complexity Low_complexity 1 38 0 1600 199 3 17 chr3 115144386 115144688 -112379890 + AluJo SINE Alu 4 301 -11 2123 129 0 35 chr3 115144703 115145020 -112379558 + AluSx SINE Alu 1 306 -6 257 135 19 0 chr3 115145020 115145072 -112379506 + (TA)n Simple_repeat Simple_repeat 2 54 0 228 179 0 0 chr3 115145072 115145128 -112379450 - L1MC4 LINE L1 -1339 6703 6648 685 139 0 26 chr3 115145128 115145243 -112379335 + FRAM SINE Alu 55 166 -10 712 211 43 121 chr3 115145256 115145413 -112379165 - MIR SINE MIR -3 259 132 6990 9 0 0 chr3 115145413 115146198 -112378380 + L1PA2 LINE L1 5370 6154 -1 712 211 43 121 chr3 115146198 115146320 -112378258 - MIR SINE MIR -130 132 2 288 145 58 0 chr3 115147487 115147556 -112377022 + MLT1L LTR MaLR 190 262 -353 1946 132 14 7 chr3 115148091 115148387 -112376191 - AluSq SINE Alu -15 298 1 1334 263 48 40 chr3 115149434 115149958 -112374620 + L1MEc LINE L1 35 562 -5834 252 0 0 0 chr3 115149966 115149994 -112374584 + (A)n Simple_repeat Simple_repeat 1 28 0 850 192 4 30 chr3 115150003 115150237 -112374341 + L1MEc LINE L1 2143 2370 -4026 * 6654 132 30 30 chr3 115150231 115151947 -112372631 + L1PA14 LINE L1 4015 5723 -438 1987 135 28 0 chr3 115151947 115152236 -112372342 + AluSg SINE Alu 1 297 -13 6654 132 30 30 chr3 115152236 115152674 -112371904 + L1PA14 LINE L1 5723 6160 -1 1819 216 21 19 chr3 115152688 115152727 -112371851 + L1MEc LINE L1 2316 2353 -3862 1950 149 0 10 chr3 115152727 115153035 -112371543 + AluJb SINE Alu 1 305 -7 1819 216 21 19 chr3 115153035 115153513 -112371065 + L1MEc LINE L1 2353 2834 -3381 766 111 15 9 chr3 115153926 115154122 -112370456 + L1MB7 LINE L1 5879 6138 -46 1161 130 6 0 chr3 115154322 115154491 -112370087 - AluSx SINE Alu -12 300 131 3132 66 5 7 chr3 115154498 115154921 -112369657 - L1PA6 LINE L1 -1 6153 5732 25666 113 11 17 chr3 115154921 115159101 -112365477 - L1P LINE L1 -1979 4167 12 2084 124 3 20 chr3 115159104 115159410 -112365168 - AluSg SINE Alu -9 301 1 709 85 0 0 chr3 115159410 115159504 -112365074 - AluSx SINE Alu -177 136 43 189 325 50 12 chr3 115159975 115160055 -112364523 + MIR SINE MIR 68 150 -112 288 250 174 22 chr3 115160128 115160220 -112364358 - MIR SINE MIR -87 121 16 261 347 116 0 chr3 115160453 115160574 -112364004 - L2 LINE L2 -4 3268 3134 540 267 108 67 chr3 115161050 115161087 -112363491 - MIR SINE MIR -5 257 223 2377 98 3 0 chr3 115161087 115161394 -112363184 - AluSx SINE Alu -4 308 1 540 267 108 67 chr3 115161394 115161596 -112362982 - MIR SINE MIR -39 223 8 284 340 19 9 chr3 115161804 115161910 -112362668 - MIR SINE MIR -81 127 21 5900 73 13 13 chr3 115162204 115163040 -112361538 + L1PA10 LINE L1 5333 6168 0 4941 130 12 16 chr3 115163035 115163872 -112360706 + L1PA16 LINE L1 5317 6150 -16 * 512 258 84 39 chr3 115164497 115164675 -112359903 - MIR3 SINE MIR 0 208 23 264 59 0 0 chr3 115164708 115164742 -112359836 + (CATA)n Simple_repeat Simple_repeat 3 36 0 22 35 0 0 chr3 115164905 115164934 -112359644 + AT_rich Low_complexity Low_complexity 1 29 0 566 238 37 150 chr3 115165255 115165634 -112358944 - L1MC4a LINE L1 -1886 5922 5587 620 152 88 0 chr3 115165645 115165770 -112358808 + MER34 LTR ERV1 27 162 -380 1037 154 32 32 chr3 115165873 115166093 -112358485 + MER34 LTR ERV1 323 542 0 234 173 24 51 chr3 115166095 115166182 -112358396 - L1MC4a LINE L1 -605 5561 5508 * 574 242 6 6 chr3 115166179 115166344 -112358234 - L1MC4a LINE L1 -1960 5848 5684 314 253 112 20 chr3 115166407 115166681 -112357897 - L1MC4a LINE L1 -679 5487 5371 417 254 229 54 chr3 115166693 115166898 -112357680 + MIR SINE MIR 12 252 -10 309 211 0 133 chr3 115167002 115167168 -112357410 - L1MC4a LINE L1 -873 5273 5130 301 307 52 20 chr3 115167468 115167621 -112356957 - L1MC4a LINE L1 -1686 4460 4303 312 276 10 10 chr3 115168008 115168106 -112356472 + CT-rich Low_complexity Low_complexity 3 100 0 202 268 54 18 chr3 115168235 115168291 -112356287 + MER5A DNA MER1_type 45 102 -87 355 269 60 50 chr3 115168416 115168598 -112355980 - L1ME LINE L1 -343 5778 5595 54 50 0 10 chr3 115168604 115168617 -112355961 + AT_rich Low_complexity Low_complexity 1 13 -86 2255 101 0 0 chr3 115168617 115168903 -112355675 + AluSc SINE Alu 1 286 -23 54 50 0 10 chr3 115168903 115168989 -112355589 + AT_rich Low_complexity Low_complexity 13 99 0 192 133 72 0 chr3 115168992 115169075 -112355503 + (TA)n Simple_repeat Simple_repeat 2 90 0 3240 88 23 15 chr3 115169218 115169694 -112354884 - L1PA14 LINE L1 0 6161 5682 1557 124 0 4 chr3 115170404 115170638 -112353940 - L1PA14 LINE L1 -9 6152 5920 244 295 122 26 chr3 115170970 115171126 -112353452 + MIR3 SINE MIR 38 208 0 754 255 77 21 chr3 115172564 115172799 -112351779 - MIR SINE MIR -13 249 2 233 291 52 67 chr3 115173148 115173282 -112351296 - L2 LINE L2 -2 3270 3139 411 21 0 0 chr3 115173282 115173330 -112351248 + (CA)n Simple_repeat Simple_repeat 2 49 0 1617 160 25 70 chr3 115173772 115174040 -112350538 + MER2 DNA MER2_type 3 253 -92 858 20 0 0 chr3 115174040 115174142 -112350436 + L1PA2 LINE L1 6054 6155 0 1617 160 25 70 chr3 115174142 115174230 -112350348 + MER2 DNA MER2_type 253 343 -2 221 250 0 0 chr3 115174634 115174686 -112349892 - L2 LINE L2 -547 2767 2716 34 34 0 17 chr3 115175138 115175153 -112349425 + AT_rich Low_complexity Low_complexity 1 15 -43 2201 108 0 7 chr3 115175153 115175439 -112349139 - AluSx SINE Alu -20 292 9 34 34 0 17 chr3 115175439 115175482 -112349096 + AT_rich Low_complexity Low_complexity 15 58 0 29 28 0 0 chr3 115175737 115175773 -112348805 + AT_rich Low_complexity Low_complexity 1 36 0 234 150 0 0 chr3 115175998 115176038 -112348540 + (CA)n Simple_repeat Simple_repeat 2 41 0 774 176 15 0 chr3 115176457 115176588 -112347990 + FLAM_C SINE Alu 1 133 0 820 205 37 82 chr3 115177876 115178120 -112346458 + L2 LINE L2 3081 3313 0 180 338 54 14 chr3 115178580 115178654 -112345924 - L2 LINE L2 -47 3225 3149 246 32 0 0 chr3 115178720 115178751 -112345827 + (TG)n Simple_repeat Simple_repeat 2 32 0 2185 120 24 21 chr3 115179633 115180007 -112344571 + THE1C LTR MaLR 1 375 0 220 103 0 0 chr3 115180324 115180353 -112344225 + (T)n Simple_repeat Simple_repeat 1 29 0 262 281 0 16 chr3 115182391 115182455 -112342123 - L2 LINE L2 0 3272 3210 1313 180 56 85 chr3 115184762 115185140 -112339438 + MLT1D LTR MaLR 20 386 -119 829 174 0 0 chr3 115185142 115185274 -112339304 - FLAM_C SINE Alu -11 132 1 422 148 0 236 chr3 115185275 115185457 -112339121 + MLT1D LTR MaLR 367 505 0 221 306 16 0 chr3 115185660 115185722 -112338856 - L2 LINE L2 -5 3308 3246 471 163 61 0 chr3 115185723 115185821 -112338757 + L1MB1 LINE L1 6063 6166 -2 750 98 0 8 chr3 115185821 115185943 -112338635 + L1MA8 LINE L1 6165 6285 -6 328 322 157 18 chr3 115187627 115187913 -112336665 - L2 LINE L2 -1154 2160 1835 190 313 67 52 chr3 115187925 115188059 -112336519 - L2 LINE L2 0 3313 3178 16182 187 34 11 chr3 115188059 115189285 -112335293 - ERVL-D LTR ERVL -1822 3942 2746 2002 158 0 7 chr3 115189285 115189589 -112334989 + AluSx SINE Alu 1 302 -10 16182 187 34 11 chr3 115189589 115191609 -112332969 - ERVL-D LTR ERVL -3018 2746 508 629 239 0 0 chr3 115191722 115191839 -112332739 + FLAM_C SINE Alu 1 117 -26 209 57 29 0 chr3 115191842 115191877 -112332701 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 441 333 24 0 chr3 115192092 115192257 -112332321 + HERVL LTR ERVL 2807 2975 -2679 * 1506 276 68 10 chr3 115192253 115192764 -112331814 - ERVL-D LTR ERVL -5222 542 2 1110 217 123 48 chr3 115192768 115192807 -112331771 - MLT2D LTR ERVL -2 412 377 710 37 28 9 chr3 115192807 115192914 -112331664 + (TCTA)n Simple_repeat Simple_repeat 4 112 0 1110 217 123 48 chr3 115192914 115193247 -112331331 - MLT2D LTR ERVL -37 377 12 1020 322 19 6 chr3 115193619 115194018 -112330560 - HERV16 LTR ERVL -1907 3089 2807 524 278 33 56 chr3 115194193 115194499 -112330079 - L1MCc LINE L1 -1281 5660 5362 451 316 51 17 chr3 115194803 115194980 -112329598 + LTR16A LTR ERVL 1 183 -267 446 211 47 166 chr3 115194982 115195295 -112329283 - L1MCc LINE L1 -2025 4916 4654 2234 91 21 0 chr3 115195295 115195580 -112328998 - AluSg SINE Alu -15 295 5 446 211 47 166 chr3 115195580 115195646 -112328932 - L1MCc LINE L1 -2287 4654 4582 41650 44 3 5 chr3 115195752 115201903 -112322675 + L1PA4 LINE L1 3 6152 -3 22 0 0 0 chr3 115201903 115201925 -112322653 + AT_rich Low_complexity Low_complexity 1 22 0 520 222 119 31 chr3 115201936 115202296 -112322282 - L1MCc LINE L1 -2693 4248 3857 1158 216 54 15 chr3 115202363 115202770 -112321808 - L1MCc LINE L1 -3167 3774 3352 259 360 5 56 chr3 115202866 115203080 -112321498 - MLT2F LTR ERVL -59 604 402 634 333 77 15 chr3 115203218 115203554 -112321024 - MLT2F LTR ERVL -290 373 17 277 256 0 11 chr3 115203555 115203645 -112320933 - L1MCc LINE L1 -3592 3349 3261 759 297 68 56 chr3 115203750 115203931 -112320647 - L1MCc LINE L1 -4887 1536 1359 1595 160 41 110 chr3 115203931 115204350 -112320228 - MLT1B LTR MaLR 0 390 1 759 297 68 56 chr3 115204350 115204758 -112319820 - L1MCc LINE L1 -5064 1359 940 242 367 19 13 chr3 115204870 115205028 -112319550 - L1MCc LINE L1 -5294 1129 971 288 232 14 0 chr3 115205167 115205236 -112319342 - L1MCc LINE L1 -5994 429 360 347 195 71 44 chr3 115206028 115206065 -112318513 - L1MCc LINE L1 -6285 138 103 1493 173 11 93 chr3 115206065 115206538 -112318040 + MER57B LTR ERV1 1 434 0 347 195 71 44 chr3 115206538 115206613 -112317965 - L1MCc LINE L1 -6320 103 23 933 297 91 16 chr3 115206639 115207310 -112317268 - HAL1 LINE L1 -1168 1339 619 224 292 62 0 chr3 115209296 115209361 -112315217 + L2 LINE L2 3204 3272 0 460 324 161 44 chr3 115210225 115211316 -112313262 - L2 LINE L2 -338 2976 1758 4303 244 60 19 chr3 115212385 115213020 -112311558 + L1ME1 LINE L1 382 990 -5406 852 210 0 0 chr3 115213020 115213177 -112311401 + FRAM SINE Alu 1 157 -9 4303 244 60 19 chr3 115213177 115214012 -112310566 + L1ME1 LINE L1 990 1912 -4484 1122 247 109 68 chr3 115214012 115214598 -112309980 + MLT1E3 LTR MaLR 2 609 -15 2519 223 55 17 chr3 115214635 115215722 -112308856 + L1ME1 LINE L1 1906 2984 -3231 297 202 17 17 chr3 115215751 115215870 -112308708 + L1ME1 LINE L1 2962 3080 -3135 3217 227 72 9 chr3 115215877 115217167 -112307411 + L1ME1 LINE L1 4225 5644 -591 1665 214 118 13 chr3 115217167 115217615 -112306963 + MLT1D LTR MaLR 1 495 -10 1642 235 52 38 chr3 115217616 115218195 -112306383 + L1ME1 LINE L1 5647 6233 -2 322 274 21 21 chr3 115218225 115218320 -112306258 + MIR SINE MIR 168 262 0 674 258 197 22 chr3 115219397 115219854 -112304724 + L1ME2 LINE L1 5354 5906 -258 263 289 241 28 chr3 115219865 115220156 -112304422 - L2 LINE L2 -955 2359 2007 724 270 17 0 chr3 115220159 115220333 -112304245 - MER45A DNA AcHobo -1 177 1 236 204 51 41 chr3 115220621 115220719 -112303859 - L1ME LINE L1 -211 5910 5812 247 299 174 21 chr3 115220741 115220982 -112303596 - L2 LINE L2 -1409 1905 1628 238 345 82 25 chr3 115221624 115221905 -112302673 - L2 LINE L2 -2562 752 456 22 0 0 0 chr3 115223508 115223530 -112301048 + AT_rich Low_complexity Low_complexity 1 22 0 291 305 106 35 chr3 115223577 115223718 -112300860 - MIR3 SINE MIR 0 208 58 750 347 66 44 chr3 115224283 115224739 -112299839 - L3 LINE CR1 -860 717 244 765 204 0 0 chr3 115224739 115224871 -112299707 - FLAM_C SINE Alu -1 132 1 750 347 66 44 chr3 115224871 115225002 -112299576 - L3 LINE CR1 -1333 244 117 1533 184 10 33 chr3 115225735 115226034 -112298544 - AluJo SINE Alu -20 292 1 264 122 0 0 chr3 115226039 115226080 -112298498 + (T)n Simple_repeat Simple_repeat 1 41 0 911 57 0 8 chr3 115226613 115226736 -112297842 + (TTCC)n Simple_repeat Simple_repeat 3 124 0 1887 163 0 4 chr3 115226736 115227013 -112297565 - AluSx SINE Alu -35 277 2 26 0 0 0 chr3 115227379 115227405 -112297173 + AT_rich Low_complexity Low_complexity 1 26 0 32835 49 4 0 chr3 115227544 115233674 -112290904 + L1PA5 LINE L1 1 6150 -4 230 220 85 85 chr3 115233734 115233852 -112290726 + MLT1J2 LTR MaLR 266 383 -67 640 211 151 81 chr3 115234646 115234944 -112289634 + MER46C DNA MER2_type 2 320 -18 329 43 0 0 chr3 115235031 115235077 -112289501 + L1PA6 LINE L1 6109 6154 0 180 0 0 0 chr3 115235839 115235859 -112288719 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 2674 103 0 0 chr3 115235859 115236246 -112288332 - L1PA13 LINE L1 -8 6155 5769 * 6033 91 15 13 chr3 115236240 115237053 -112287525 - L1PA14 LINE L1 0 6161 5353 2585 105 16 5 chr3 115237053 115237424 -112287154 + THE1C LTR MaLR 1 375 0 6033 91 15 13 chr3 115237424 115238131 -112286447 - L1PA14 LINE L1 -808 5353 4648 2189 118 39 36 chr3 115238138 115238501 -112286077 + THE1B LTR MaLR 1 364 0 11979 92 3 0 chr3 115238501 115240076 -112284502 + THE1B-int LTR MaLR 1 1580 0 2120 110 75 20 chr3 115240076 115240421 -112284157 + THE1B LTR MaLR 1 364 0 3095 173 20 2 chr3 115240421 115240805 -112283773 + L1P LINE L1 4014 4414 -1732 333 68 0 0 chr3 115240805 115240849 -112283729 + (TAAAA)n Simple_repeat Simple_repeat 2 45 0 3095 173 20 2 chr3 115240849 115241065 -112283513 + L1P LINE L1 4414 4625 -1521 4458 149 34 29 chr3 115241741 115242599 -112281979 - MER6 DNA MER2_type 0 865 4 198 348 22 30 chr3 115242921 115243056 -112281522 + L2 LINE L2 2596 2729 -585 381 281 56 25 chr3 115243152 115243312 -112281266 - MIR SINE MIR -5 257 93 2692 139 142 50 chr3 115243931 115244256 -112280322 - L1MB2 LINE L1 -8 6163 5869 243 0 0 0 chr3 115244256 115244283 -112280295 + (TG)n Simple_repeat Simple_repeat 2 28 0 2692 139 142 50 chr3 115244283 115244418 -112280160 - L1MB2 LINE L1 -302 5869 5748 2560 134 44 2 chr3 115244418 115244829 -112279749 - MSTA LTR MaLR 0 428 1 2692 139 142 50 chr3 115244829 115244874 -112279704 - L1MB2 LINE L1 -423 5748 5709 2140 127 0 7 chr3 115244874 115245174 -112279404 - AluSq SINE Alu -15 298 1 2692 139 142 50 chr3 115245174 115245291 -112279287 - L1MB2 LINE L1 -462 5709 5604 243 0 0 0 chr3 115245291 115245318 -112279260 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2692 139 142 50 chr3 115245318 115245345 -112279233 - L1MB2 LINE L1 -567 5604 5451 210 350 142 25 chr3 115245701 115245821 -112278757 + L2 LINE L2 3127 3260 -12 * 1264 284 78 26 chr3 115245802 115246425 -112278153 - L2 LINE L2 -7 3306 2651 2420 148 26 16 chr3 115246713 115247140 -112277438 + MSTB1 LTR MaLR 1 431 -1 23 0 0 0 chr3 115247601 115247624 -112276954 + AT_rich Low_complexity Low_complexity 1 23 0 2406 74 7 0 chr3 115247700 115247999 -112276579 + AluSc SINE Alu 1 301 -8 30 45 0 0 chr3 115248357 115248401 -112276177 + AT_rich Low_complexity Low_complexity 1 44 0 29 28 0 0 chr3 115249197 115249233 -112275345 + AT_rich Low_complexity Low_complexity 1 36 0 312 316 120 7 chr3 115249248 115249539 -112275039 + L1MC/D LINE L1 5316 5639 -2169 25 51 0 0 chr3 115249958 115249997 -112274581 + AT_rich Low_complexity Low_complexity 1 39 0 557 194 0 10 chr3 115252010 115252113 -112272465 - FLAM_A SINE Alu -18 124 23 299 263 81 3 chr3 115252912 115253101 -112271477 + MER112 DNA MER1_type 1 259 -1 26 64 0 0 chr3 115253154 115253201 -112271377 + AT_rich Low_complexity Low_complexity 1 47 0 37 23 0 0 chr3 115253509 115253553 -112271025 + AT_rich Low_complexity Low_complexity 1 44 0 1014 223 65 68 chr3 115254114 115254702 -112269876 - L1MC5 LINE L1 -48 7913 7328 240 86 0 0 chr3 115254716 115254751 -112269827 + (TG)n Simple_repeat Simple_repeat 2 36 0 1421 157 66 41 chr3 115256277 115256595 -112267983 + MLT1C LTR MaLR 142 467 0 398 281 170 90 chr3 115256837 115257225 -112267353 - L2 LINE L2 -1 3271 2853 1249 167 75 48 chr3 115257714 115258007 -112266571 - MLT1C LTR MaLR -25 442 142 380 267 95 22 chr3 115258406 115258638 -112265940 + L1MEd LINE L1 985 1233 -4886 301 369 41 37 chr3 115258679 115258753 -112265825 + HAL1 LINE L1 1395 1467 -1040 3279 124 52 2 chr3 115258753 115259253 -112265325 - MER1A DNA MER1_type 0 527 3 301 369 41 37 chr3 115259253 115259422 -112265156 + HAL1 LINE L1 1467 1639 -868 1191 121 18 0 chr3 115259422 115259587 -112264991 + AluSg SINE Alu 1 168 -142 7731 18 1 2 chr3 115259593 115260496 -112264082 + L1PA3 LINE L1 5254 6155 0 21 36 0 0 chr3 115260647 115260675 -112263903 + AT_rich Low_complexity Low_complexity 1 28 0 2437 76 0 0 chr3 115261033 115261337 -112263241 + AluY SINE Alu 1 304 -7 365 302 42 47 chr3 115261364 115261579 -112262999 + L1MEd LINE L1 2190 2403 -3726 718 137 6 37 chr3 115261682 115261843 -112262735 + L1MB2 LINE L1 5287 5442 -738 * 1000 132 11 6 chr3 115261830 115262004 -112262574 + L1MB2 LINE L1 5721 5895 -288 378 130 14 0 chr3 115262019 115262088 -112262490 + L1MB2 LINE L1 6099 6168 -3 514 339 49 44 chr3 115262095 115262482 -112262096 - L2 LINE L2 -615 2699 2311 394 355 103 17 chr3 115263116 115263350 -112261228 + MIR SINE MIR 3 256 -6 4803 85 42 14 chr3 115264274 115264990 -112259588 - L1PB3 LINE L1 -1 6153 5418 505 274 89 17 chr3 115266021 115266200 -112258378 - MIR SINE MIR -24 238 47 559 214 177 114 chr3 115267959 115268326 -112256252 + HAL1 LINE L1 721 1063 -1444 1314 221 12 75 chr3 115268326 115268373 -112256205 + MLT1B LTR MaLR 1 49 -341 2406 74 3 0 chr3 115268373 115268672 -112255906 - AluY SINE Alu -11 300 1 1314 221 12 75 chr3 115268672 115269040 -112255538 + MLT1B LTR MaLR 49 390 0 559 214 177 114 chr3 115269040 115269416 -112255162 + HAL1 LINE L1 1063 1511 -996 182 317 148 28 chr3 115269689 115269831 -112254747 + L3 LINE CR1 1047 1205 -372 272 0 0 0 chr3 115269833 115269866 -112254712 + L1P4 LINE L1 5539 5571 -597 431 48 277 0 chr3 115269966 115270049 -112254529 + L1PA13 LINE L1 5980 6085 -78 185 279 0 66 chr3 115270249 115270310 -112254268 + L3 LINE CR1 1489 1545 -32 3538 148 18 49 chr3 115272122 115272838 -112251740 - L1MB1 LINE L1 0 6168 5475 189 250 23 0 chr3 115273435 115273479 -112251099 - L2 LINE L2 -14 3299 3255 877 163 45 9 chr3 115273589 115273810 -112250768 - MER33 DNA MER1_type -1 323 95 335 258 43 0 chr3 115273885 115273978 -112250600 - MER33 DNA MER1_type -224 100 4 212 313 109 62 chr3 115273982 115274110 -112250468 + L3 LINE CR1 1307 1440 -137 204 67 0 0 chr3 115274153 115274183 -112250395 + (TTTTTA)n Simple_repeat Simple_repeat 1 30 0 252 26 0 0 chr3 115274497 115274536 -112250042 + L1MA3 LINE L1 6267 6305 0 258 162 15 29 chr3 115274633 115274701 -112249877 - L1ME LINE L1 -299 5822 5756 2063 139 7 7 chr3 115275083 115275392 -112249186 - AluSx SINE Alu -3 309 1 387 275 29 4 chr3 115277769 115277889 -112246689 + MIR SINE MIR 46 167 -62 341 297 67 38 chr3 115277922 115278131 -112246447 - MLT1L LTR MaLR -33 582 368 184 247 134 31 chr3 115278837 115278934 -112245644 - L3 LINE CR1 -1205 372 266 319 239 51 8 chr3 115279172 115279289 -112245289 - LTR33 LTR ERVL -6 515 394 271 265 53 46 chr3 115279363 115279514 -112245064 - LTR33 LTR ERVL -369 152 1 353 288 14 65 chr3 115280780 115280919 -112243659 + L2 LINE L2 33 164 -3150 646 213 12 37 chr3 115280998 115281162 -112243416 + L2 LINE L2 3153 3312 -1 198 260 104 31 chr3 115281497 115281593 -112242985 + MIR SINE MIR 22 124 -84 25 51 0 0 chr3 115282303 115282342 -112242236 + AT_rich Low_complexity Low_complexity 1 39 0 2034 164 71 10 chr3 115283791 115284187 -112240391 + MSTB1 LTR MaLR 1 420 -12 395 86 0 0 chr3 115284723 115284781 -112239797 + L1MA2 LINE L1 6247 6304 0 370 297 0 27 chr3 115285508 115285619 -112238959 + MIR3 SINE MIR 95 202 -6 1173 183 9 80 chr3 115285658 115286007 -112238571 - MER33 DNA MER1_type 0 324 1 214 355 13 0 chr3 115286540 115286616 -112237962 - L2 LINE L2 0 3313 3237 541 323 0 13 chr3 115286707 115286862 -112237716 - MIR3 SINE MIR -14 194 42 6464 56 6 5 chr3 115286862 115287687 -112236891 + L1PA8 LINE L1 5344 6169 -3 2235 91 7 3 chr3 115287692 115288000 -112236578 + AluY SINE Alu 3 311 0 6147 232 59 54 chr3 115288554 115290009 -112234569 - L1MEc LINE L1 -1744 4796 3350 316 146 0 0 chr3 115290009 115290064 -112234514 - U5 snRNA snRNA -61 55 1 6147 232 59 54 chr3 115290064 115290844 -112233734 - L1MEc LINE L1 -3190 3350 2549 2606 47 0 0 chr3 115290844 115291141 -112233437 - AluSg SINE Alu -13 297 1 6147 232 59 54 chr3 115291141 115291233 -112233345 - L1MEc LINE L1 -3991 2549 2459 1392 259 48 54 chr3 115291220 115291922 -112232656 - L1MEc LINE L1 -4832 1708 1011 * 1233 97 0 6 chr3 115291930 115292106 -112232472 - L1PA15 LINE L1 -5 6160 5986 741 242 5 0 chr3 115292106 115292292 -112232286 + L1 LINE L1 4394 4580 -1566 363 240 20 0 chr3 115292931 115293031 -112231547 + L1ME LINE L1 526 627 -5443 313 288 153 12 chr3 115293242 115293405 -112231173 - MIR SINE MIR -57 205 20 356 267 137 12 chr3 115293419 115293580 -112230998 - L1ME LINE L1 -682 5439 5259 829 188 30 79 chr3 115293764 115293990 -112230588 + MER8 DNA MER2_type 1 344 -1 285 100 0 0 chr3 115293990 115294040 -112230538 + (TTAG)n Simple_repeat Simple_repeat 3 52 0 2246 96 0 0 chr3 115294040 115294322 -112230256 - AluSg1 SINE Alu -27 282 1 877 169 0 40 chr3 115294352 115294529 -112230049 + Tigger2a DNA MER2_type 51 220 -214 845 119 0 17 chr3 115294532 115294650 -112229928 - AluJb SINE Alu -195 117 2 21 0 0 0 chr3 115294667 115294688 -112229890 + AT_rich Low_complexity Low_complexity 1 21 0 1391 123 20 76 chr3 115294691 115294942 -112229636 + Tigger2a DNA MER2_type 207 443 -1 218 200 46 15 chr3 115294950 115295015 -112229563 + (CATATA)n Simple_repeat Simple_repeat 3 69 0 223 264 169 34 chr3 115295956 115296134 -112228444 + L3b LINE CR1 1197 1398 -185 512 327 111 4 chr3 115296310 115296536 -112228042 - MIR SINE MIR -10 252 3 195 185 0 111 chr3 115296836 115296890 -112227688 - MIR SINE MIR -105 157 110 621 277 86 16 chr3 115297536 115297814 -112226764 + L2 LINE L2 2767 3062 -251 240 330 35 26 chr3 115297856 115297971 -112226607 + MLT1I LTR MaLR 31 146 -263 283 261 43 99 chr3 115297999 115298160 -112226418 + MLT1I LTR MaLR 258 409 0 201 225 0 0 chr3 115299466 115299506 -112225072 - L2 LINE L2 -4 3268 3229 21 57 0 0 chr3 115299920 115299955 -112224623 + AT_rich Low_complexity Low_complexity 1 35 0 292 325 8 42 chr3 115299998 115300118 -112224460 - L2 LINE L2 -25 3247 3132 256 294 33 11 chr3 115300623 115300715 -112223863 + MIR SINE MIR 52 145 -63 297 143 10 133 chr3 115300822 115300854 -112223724 - L1MA9 LINE L1 -116 7615 7581 1713 201 58 0 chr3 115300854 115301198 -112223380 - MLT1A1 LTR MaLR 0 365 2 297 143 10 133 chr3 115301198 115301263 -112223315 - L1MA9 LINE L1 -150 7581 7530 2707 139 4 9 chr3 115301363 115301823 -112222755 - L1MA9 LINE L1 -593 7138 6681 1372 226 24 39 chr3 115301835 115302167 -112222411 - MLT1A1 LTR MaLR -38 327 1 2591 161 45 94 chr3 115302171 115302842 -112221736 - L1MA9 LINE L1 -864 6701 6064 907 223 8 27 chr3 115302842 115303102 -112221476 - L1MA9 LINE L1 -3216 4349 4095 886 106 0 68 chr3 115303131 115303263 -112221315 - AluSx SINE Alu -159 153 31 2715 270 28 36 chr3 115303263 115303831 -112220747 - L1MA9 LINE L1 -3490 4075 3504 1968 153 3 23 chr3 115303831 115304132 -112220446 - AluSx SINE Alu -17 295 1 2715 270 28 36 chr3 115304132 115305576 -112219002 - L1MA9 LINE L1 -4061 3504 2117 644 304 36 3 chr3 115305736 115306101 -112218477 - L1M4 LINE L1 -3450 3656 3280 218 206 15 0 chr3 115306177 115306245 -112218333 + (TTA)n Simple_repeat Simple_repeat 1 69 0 5967 122 35 16 chr3 115306408 115307091 -112217487 + L1MA8 LINE L1 5214 5924 -367 14427 128 30 14 chr3 115307091 115309469 -112215109 + Tigger1 DNA MER2_type 1 2418 0 5967 122 35 16 chr3 115309469 115309822 -112214756 + L1MA8 LINE L1 5924 6269 -22 733 160 8 0 chr3 115309958 115310077 -112214501 - FLAM_A SINE Alu -11 122 3 1000 173 6 22 chr3 115310103 115310282 -112214296 + AluJo SINE Alu 124 299 -13 820 275 22 51 chr3 115310474 115310747 -112213831 - LTR16A1 LTR ERVL -3 454 190 237 119 0 51 chr3 115311596 115311655 -112212923 + (TA)n Simple_repeat Simple_repeat 1 56 0 973 150 12 30 chr3 115311699 115311866 -112212712 + FRAM SINE Alu 1 163 -13 928 207 58 0 chr3 115312157 115312345 -112212233 + MER8 DNA MER2_type 41 239 0 212 270 11 79 chr3 115312509 115312598 -112211980 - L2 LINE L2 0 3313 3231 249 289 0 40 chr3 115313031 115313107 -112211471 - MER5A DNA MER1_type 0 189 117 27 49 0 0 chr3 115313153 115313194 -112211384 + AT_rich Low_complexity Low_complexity 1 41 0 2382 244 79 52 chr3 115313498 115314464 -112210114 - L1M4 LINE L1 -6038 992 1 1138 93 58 0 chr3 115315866 115316038 -112208540 + THE1-int LTR MaLR 1297 1478 -102 331 152 411 9 chr3 115316194 115316306 -112208272 + Tigger1 DNA MER2_type 1 157 -2261 1047 164 16 0 chr3 115316351 115316534 -112208044 + Tigger1 DNA MER2_type 2231 2416 -2 27 29 0 0 chr3 115316611 115316645 -112207933 + AT_rich Low_complexity Low_complexity 1 34 0 1288 183 38 102 chr3 115317068 115317468 -112207110 - MLT1A2 LTR MaLR 0 374 1 12485 30 0 1 chr3 115317628 115319914 -112204664 + L1PA3 LINE L1 3883 6171 0 547 305 30 59 chr3 115320081 115320386 -112204192 - MLT1J LTR MaLR -215 296 1 213 317 59 40 chr3 115321017 115321118 -112203460 - L2 LINE L2 -618 2696 2594 3651 116 70 5 chr3 115321137 115321723 -112202855 + L1PA14 LINE L1 5538 6161 0 823 234 75 15 chr3 115321897 115322098 -112202480 - MIR SINE MIR -3 259 47 2580 192 31 49 chr3 115323799 115324322 -112200256 + MLT2B3 LTR ERVL 1 515 -39 448 55 14 14 chr3 115324322 115324395 -112200183 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 2580 192 31 49 chr3 115324395 115324422 -112200156 + MLT2B3 LTR ERVL 515 541 -13 270 0 0 0 chr3 115324766 115324796 -112199782 + (TAA)n Simple_repeat Simple_repeat 3 32 0 342 306 206 0 chr3 115324809 115325008 -112199570 - MIR SINE MIR -21 241 2 383 220 202 0 chr3 115325309 115325418 -112199160 + L2 LINE L2 3182 3312 -1 795 323 138 65 chr3 115327254 115327425 -112197153 - L3 LINE CR1 -12 1565 1408 3404 160 6 49 chr3 115327425 115327957 -112196621 - L1MC1 LINE L1 0 6333 5836 2046 132 0 3 chr3 115327957 115328244 -112196334 - AluSx SINE Alu -26 286 1 3404 160 6 49 chr3 115328244 115328399 -112196179 - L1MC1 LINE L1 -497 5836 5676 795 323 138 65 chr3 115328399 115329027 -112195551 - L3 LINE CR1 -169 1408 708 281 213 40 13 chr3 115329150 115329225 -112195353 - L1ME4a LINE L1 -105 6016 5940 24 67 0 0 chr3 115329253 115329298 -112195280 + AT_rich Low_complexity Low_complexity 1 45 0 2050 117 3 10 chr3 115329333 115329631 -112194947 - AluSg SINE Alu -14 296 1 235 239 0 0 chr3 115329656 115329702 -112194876 - L2 LINE L2 -37 3235 3190 686 367 86 27 chr3 115329759 115330142 -112194436 - L3 LINE CR1 -867 710 292 896 198 29 19 chr3 115330142 115330349 -112194229 + MER3 DNA MER1_type 1 209 0 686 367 86 27 chr3 115330349 115330444 -112194134 - L3 LINE CR1 -1285 292 204 942 138 6 11 chr3 115330484 115330665 -112193913 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 416 190 16 16 chr3 115330665 115330786 -112193792 + CT-rich Low_complexity Low_complexity 2 122 0 381 326 137 30 chr3 115331889 115332254 -112192324 - L2 LINE L2 -456 2858 2455 1074 166 66 23 chr3 115332472 115332731 -112191847 - L1MD3 LINE L1 0 7995 7726 1206 236 61 30 chr3 115332813 115333109 -112191469 + MER21B LTR ERV1 20 324 -539 1666 182 91 52 chr3 115333121 115333560 -112191018 - MLT1D LTR MaLR -49 456 1 561 245 35 14 chr3 115333562 115333705 -112190873 - MIR SINE MIR -80 182 37 208 302 0 0 chr3 115333788 115333831 -112190747 - MER5A DNA MER1_type -83 106 64 258 105 0 0 chr3 115333832 115333870 -112190708 + (TA)n Simple_repeat Simple_repeat 2 39 0 1242 215 40 22 chr3 115333898 115334172 -112190406 - AluJo SINE Alu -30 282 4 329 240 0 0 chr3 115334174 115334245 -112190333 - MER5A DNA MER1_type -115 74 4 362 321 64 21 chr3 115334263 115334450 -112190128 - MIR SINE MIR 0 262 68 354 294 20 73 chr3 115334450 115334654 -112189924 - LTR67 LTR ERVL -12 545 353 2185 204 75 51 chr3 115334739 115335269 -112189309 + MER21B LTR ERV1 310 852 -11 460 145 17 12 chr3 115335291 115335391 -112189187 - L1MC4a LINE L1 -250 7558 7481 1661 82 8 4 chr3 115335404 115335648 -112188930 - L1MA2 LINE L1 0 6304 6060 * 10298 165 27 29 chr3 115335646 115335770 -112188808 - L1PA13 LINE L1 -1 6162 6039 2268 75 7 3 chr3 115335770 115336062 -112188516 - AluY SINE Alu -18 293 1 10298 165 27 29 chr3 115336062 115337186 -112187392 - L1PA13 LINE L1 -124 6039 4915 1878 154 0 0 chr3 115337186 115337471 -112187107 + AluSx SINE Alu 23 307 -5 10298 165 27 29 chr3 115337471 115339081 -112185497 - L1PA13 LINE L1 -1248 4915 3308 4953 172 14 4 chr3 115339082 115339889 -112184689 + L1MA3 LINE L1 903 1717 -5848 * 7308 120 28 7 chr3 115339873 115341319 -112183259 + L1MA3 LINE L1 2491 3977 -3588 691 194 0 0 chr3 115341321 115341460 -112183118 + L1MA3 LINE L1 4788 4926 -2639 2347 127 8 27 chr3 115341461 115341832 -112182746 - THE1B LTR MaLR 0 364 1 6219 147 73 5 chr3 115341832 115343204 -112181374 - THE1B-int LTR MaLR 0 1580 48 1130 151 0 0 chr3 115343204 115343370 -112181208 + THE1B LTR MaLR 199 364 0 1213 168 25 53 chr3 115343394 115343638 -112180940 - THE1B LTR MaLR -127 237 1 6802 164 33 18 chr3 115343641 115345848 -112178730 + L1MA3 LINE L1 4931 7225 -499 1975 93 69 17 chr3 115345848 115346138 -112178440 + AluY SINE Alu 1 305 -6 6802 164 33 18 chr3 115346138 115346645 -112177933 + L1MA3 LINE L1 7225 7723 -1 211 318 32 0 chr3 115346674 115346737 -112177841 - L2 LINE L2 -5 3308 3244 378 349 100 31 chr3 115347410 115347720 -112176858 - L3 LINE CR1 -205 1372 1034 547 85 0 24 chr3 115347720 115347802 -112176776 - MADE1 DNA Mariner 0 80 1 378 349 100 31 chr3 115347802 115347841 -112176737 - L3 LINE CR1 -543 1034 999 2110 146 0 0 chr3 115347989 115348297 -112176281 - AluJb SINE Alu 0 312 5 367 296 17 9 chr3 115348784 115348899 -112175679 + MIR SINE MIR 147 262 0 196 274 151 0 chr3 115349037 115349110 -112175468 - MIR SINE MIR -95 113 30 2277 113 3 0 chr3 115349246 115349581 -112174997 + AluSx SINE Alu 1 336 0 262 238 226 0 chr3 115349601 115349769 -112174809 + L1M4 LINE L1 3792 3997 -2149 304 287 126 29 chr3 115349910 115350084 -112174494 + L1M4 LINE L1 4046 4236 -1910 921 262 63 94 chr3 115350212 115350785 -112173793 + MLT1H1 LTR MaLR 1 555 0 536 269 32 18 chr3 115351066 115351275 -112173303 - MLT1G1 LTR MaLR -5 590 281 583 241 29 0 chr3 115351276 115351413 -112173165 - L1MB5 LINE L1 -131 6043 5903 21 0 0 0 chr3 115351468 115351489 -112173089 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 115351639 115351674 -112172904 + AT_rich Low_complexity Low_complexity 1 35 0 484 217 32 25 chr3 115351760 115351917 -112172661 + L1MC5 LINE L1 7177 7334 -627 212 301 0 41 chr3 115351980 115352053 -112172525 + MIR3 SINE MIR 87 156 -52 23 0 0 0 chr3 115352056 115352079 -112172499 + AT_rich Low_complexity Low_complexity 1 23 0 352 242 25 17 chr3 115352191 115352311 -112172267 + L1MC5 LINE L1 7347 7467 -494 832 199 20 56 chr3 115352342 115352538 -112172040 - MER20 DNA MER1_type -27 192 4 567 206 21 96 chr3 115352639 115352921 -112171657 + L1MC5 LINE L1 7668 7928 -33 425 203 98 30 chr3 115352960 115353093 -112171485 + HAL1 LINE L1 2352 2493 -14 227 196 20 0 chr3 115353225 115353276 -112171302 + L1MC5 LINE L1 7380 7431 -530 1196 148 0 32 chr3 115354368 115354584 -112169994 + MER3 DNA MER1_type 1 209 0 2596 39 7 0 chr3 115355350 115355658 -112168920 + AluY SINE Alu 1 310 -1 6139 232 59 54 chr3 115356212 115357667 -112166911 - L1MEc LINE L1 -1744 4796 3350 316 146 0 0 chr3 115357667 115357722 -112166856 - U5 snRNA snRNA -61 55 1 6139 232 59 54 chr3 115357722 115358502 -112166076 - L1MEc LINE L1 -3190 3350 2549 2606 47 0 0 chr3 115358502 115358799 -112165779 - AluSg SINE Alu -13 297 1 6139 232 59 54 chr3 115358799 115358891 -112165687 - L1MEc LINE L1 -3991 2549 2459 1392 259 48 54 chr3 115358878 115359580 -112164998 - L1MEc LINE L1 -4832 1708 1011 * 1233 97 0 6 chr3 115359588 115359764 -112164814 - L1PA15 LINE L1 -5 6160 5986 741 242 5 0 chr3 115359764 115359950 -112164628 + L1 LINE L1 4394 4580 -1566 363 240 20 0 chr3 115360589 115360689 -112163889 + L1ME LINE L1 526 627 -5443 486 280 14 7 chr3 115361043 115361186 -112163392 - L1MEc LINE L1 -5921 609 466 21 36 0 0 chr3 115362794 115362822 -112161756 + AT_rich Low_complexity Low_complexity 1 28 0 516 332 62 29 chr3 115363481 115363837 -112160741 - L2 LINE L2 -146 3167 2790 459 0 0 0 chr3 115363841 115363892 -112160686 + (TTATA)n Simple_repeat Simple_repeat 1 51 0 2147 102 3 3 chr3 115363893 115364177 -112160401 - AluSc SINE Alu -25 284 1 240 307 29 14 chr3 115364290 115364430 -112160148 + HAL1b LINE L1 1180 1321 -27 31 58 0 0 chr3 115366562 115366614 -112157964 + AT_rich Low_complexity Low_complexity 1 52 0 324 147 0 0 chr3 115367351 115367426 -112157152 + (A)n Simple_repeat Simple_repeat 1 75 0 1588 213 29 64 chr3 115367570 115368235 -112156343 - LTR9 LTR ERV1 0 612 13 2423 83 0 0 chr3 115368237 115368538 -112156040 + AluSc SINE Alu 1 301 -8 21 0 0 0 chr3 115368626 115368647 -112155931 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 115369074 115369096 -112155482 + AT_rich Low_complexity Low_complexity 1 22 0 285 98 0 0 chr3 115370051 115370092 -112154486 + (TG)n Simple_repeat Simple_repeat 2 42 0 500 250 8 8 chr3 115370184 115370308 -112154270 - MER103 DNA DNA -41 125 2 22 0 0 0 chr3 115370593 115370615 -112153963 + AT_rich Low_complexity Low_complexity 1 22 0 447 282 82 20 chr3 115371526 115371781 -112152797 - L1MC5 LINE L1 -49 7912 7642 234 315 110 39 chr3 115372252 115372379 -112152199 - L2 LINE L2 -1 3271 3136 467 95 36 14 chr3 115373279 115373417 -112151161 + L1PA8 LINE L1 5948 6170 -2 680 262 19 24 chr3 115373481 115373687 -112150891 - MIR SINE MIR -8 254 50 340 272 119 76 chr3 115373949 115374379 -112150199 - L2 LINE L2 -138 3134 2683 494 235 183 24 chr3 115374927 115375066 -112149512 - Charlie2 DNA MER1_type 0 2862 2747 2094 98 0 3 chr3 115375066 115375374 -112149204 - AluY SINE Alu 0 307 1 494 235 183 24 chr3 115375374 115375446 -112149132 - Charlie2 DNA MER1_type -115 2747 2616 1032 245 149 12 chr3 115376227 115376725 -112147853 - Charlie2 DNA MER1_type -238 2624 2059 244 322 122 33 chr3 115376725 115376905 -112147673 + MIR3 SINE MIR 10 205 -3 2968 226 32 3 chr3 115377371 115377990 -112146588 + MER82 DNA MER2_type 6 642 -11 249 360 72 9 chr3 115378094 115378205 -112146373 - L2 LINE L2 0 3272 3155 238 202 155 36 chr3 115379124 115379208 -112145370 - L2 LINE L2 -8 3264 3171 476 258 17 42 chr3 115381965 115382085 -112142493 + L2 LINE L2 3197 3313 0 * 1249 352 81 38 chr3 115382071 115382815 -112141763 + L3 LINE CR1 688 1463 -114 349 289 50 33 chr3 115383079 115383200 -112141378 - L2 LINE L2 -2 3270 3148 340 322 48 14 chr3 115383286 115383432 -112141146 + L2 LINE L2 3117 3267 -5 607 316 42 0 chr3 115384296 115384486 -112140092 + MIR SINE MIR 28 225 -37 1568 185 35 21 chr3 115385102 115385388 -112139190 + AluJb SINE Alu 1 290 -22 184 329 155 12 chr3 115386132 115386293 -112138285 + MIR SINE MIR 59 242 -20 745 319 32 12 chr3 115387599 115387850 -112136728 + L2 LINE L2 62 317 -2997 823 278 88 50 chr3 115387875 115388372 -112136206 + LTR33A LTR ERVL 1 516 -7 4142 240 61 171 chr3 115388375 115389367 -112135211 + L2 LINE L2 331 1431 -1882 705 304 70 36 chr3 115389367 115389726 -112134852 + LTR16B LTR ERVL 10 380 -84 4142 240 61 171 chr3 115389726 115391709 -112132869 + L2 LINE L2 1431 3307 -6 609 330 120 0 chr3 115391772 115392005 -112132573 + MIR SINE MIR 2 262 0 19902 171 32 6 chr3 115392125 115397422 -112127156 - L1 LINE L1 -2037 5528 90 297 0 0 0 chr3 115397422 115397455 -112127123 + (TG)n Simple_repeat Simple_repeat 2 34 0 19902 171 32 6 chr3 115397455 115397507 -112127071 - L1 LINE L1 -7475 90 41 393 115 0 0 chr3 115397519 115397580 -112126998 - L1PB4 LINE L1 -28 6128 6068 1737 178 14 3 chr3 115398139 115398426 -112126152 - AluJo SINE Alu -18 294 5 26 64 0 0 chr3 115398461 115398508 -112126070 + AT_rich Low_complexity Low_complexity 1 47 0 8430 67 3 0 chr3 115398719 115399785 -112124793 - MER11C LTR ERVK -2 1069 1 412 315 66 17 chr3 115399785 115399957 -112124621 - MIR3 SINE MIR -9 199 16 23 33 0 0 chr3 115400060 115400090 -112124488 + AT_rich Low_complexity Low_complexity 1 30 0 845 286 59 0 chr3 115400119 115400357 -112124221 + MIR SINE MIR 6 257 -5 389 226 90 13 chr3 115400753 115400908 -112123670 - MER112 DNA MER1_type -93 167 1 2043 144 62 6 chr3 115401658 115402013 -112122565 - THE1C LTR MaLR 0 375 1 8203 135 82 14 chr3 115402013 115403492 -112121086 - THE1C-int LTR MaLR 0 1580 1 2301 118 41 14 chr3 115403492 115403857 -112120721 - THE1C LTR MaLR 0 375 1 945 274 121 11 chr3 115403936 115404465 -112120113 - Charlie7 DNA MER1_type -278 2334 1748 820 100 71 0 chr3 115404470 115404610 -112119968 - L1MB1 LINE L1 -5 6163 6014 2046 192 35 2 chr3 115404611 115405038 -112119540 - L1MB1 LINE L1 -244 5924 5484 1239 198 62 9 chr3 115405042 115405509 -112119069 + L1MB1 LINE L1 5027 5515 -639 2524 232 95 36 chr3 115405511 115405787 -112118791 - Charlie7 DNA MER1_type -857 1755 1497 12937 21 8 1 chr3 115405787 115408064 -112116514 + L1PA2 LINE L1 3870 6153 -2 2524 232 95 36 chr3 115408064 115408364 -112116214 - Charlie7 DNA MER1_type -1115 1497 1216 189 94 0 0 chr3 115408364 115408396 -112116182 + (TA)n Simple_repeat Simple_repeat 1 32 0 2524 232 95 36 chr3 115408396 115409001 -112115577 - Charlie7 DNA MER1_type -1396 1216 504 531 224 170 17 chr3 115409103 115409397 -112115181 - L1MC5 LINE L1 -57 7904 7566 320 287 144 10 chr3 115409399 115409594 -112114984 - L2 LINE L2 -757 2557 2337 22 56 0 0 chr3 115409673 115409709 -112114869 + AT_rich Low_complexity Low_complexity 1 36 0 7231 92 7 1 chr3 115409728 115411562 -112113016 - L1PA8 LINE L1 0 6172 4339 11106 127 18 39 chr3 115411564 115413854 -112110724 - L1P3 LINE L1 -4140 2321 11 276 301 234 13 chr3 115413856 115414095 -112110483 - L2 LINE L2 -1094 2220 1929 225 310 5 20 chr3 115414089 115414195 -112110383 + MIR SINE MIR 41 142 -66 * 447 233 23 122 chr3 115415991 115416163 -112108415 - MIR3 SINE MIR -10 198 44 1827 126 88 6 chr3 115416179 115416521 -112108057 - L1MA2 LINE L1 -3 6301 5932 1662 204 108 20 chr3 115417017 115417473 -112107105 - MLT1D LTR MaLR -9 496 1 232 348 0 11 chr3 115417512 115417604 -112106974 + MIR SINE MIR 157 247 -15 198 0 0 0 chr3 115419181 115419203 -112105375 + (T)n Simple_repeat Simple_repeat 1 22 0 1710 191 7 7 chr3 115420524 115420828 -112103750 - AluJo SINE Alu -6 306 3 448 264 67 79 chr3 115421177 115421431 -112103147 + MIR SINE MIR 12 262 0 199 352 65 36 chr3 115423119 115423366 -112101212 + L2 LINE L2 2507 2760 -554 1364 170 110 39 chr3 115423555 115423919 -112100659 + MLT1B LTR MaLR 1 390 0 742 347 99 45 chr3 115426612 115427440 -112097138 + L2 LINE L2 2291 3268 -4 632 211 4 132 chr3 115427871 115428098 -112096480 + MER3 DNA MER1_type 5 202 -7 522 253 200 0 chr3 115428949 115429099 -112095479 - MER5A DNA MER1_type -1 188 9 401 336 0 0 chr3 115429827 115429934 -112094644 + MLT1E LTR MaLR 291 397 -196 304 345 80 77 chr3 115430495 115431323 -112093255 + L2 LINE L2 2437 3263 -9 191 278 122 26 chr3 115431498 115431613 -112092965 + L2 LINE L2 3093 3218 -54 1253 225 35 59 chr3 115431758 115432163 -112092415 - MLT1D LTR MaLR -80 425 31 238 232 18 0 chr3 115432215 115432271 -112092307 + L2 LINE L2 3215 3271 -1 1567 221 92 87 chr3 115432434 115433021 -112091557 + MLT1E LTR MaLR 3 592 -1 252 324 9 63 chr3 115433625 115433736 -112090842 - MIR3 SINE MIR -28 180 76 252 261 0 0 chr3 115434134 115434180 -112090398 - MIR SINE MIR -105 103 58 197 220 17 85 chr3 115434449 115434508 -112090070 + MIR SINE MIR 102 147 -61 207 0 0 0 chr3 115434624 115434647 -112089931 + (TC)n Simple_repeat Simple_repeat 2 24 0 * 210 0 18 91 chr3 115434646 115434701 -112089877 + (TA)n Simple_repeat Simple_repeat 2 52 0 196 291 164 18 chr3 115434943 115435053 -112089525 - L2 LINE L2 -222 3050 2925 407 81 0 0 chr3 115435633 115435695 -112088883 - L1PA13 LINE L1 -133 6030 5969 830 76 0 17 chr3 115435695 115435814 -112088764 + L1PA13 LINE L1 6028 6144 -19 2297 81 3 0 chr3 115436221 115436532 -112088046 + AluSp SINE Alu 1 312 0 23 33 0 0 chr3 115437127 115437157 -112087421 + AT_rich Low_complexity Low_complexity 1 30 0 210 200 80 0 chr3 115437165 115437215 -112087363 + MIR SINE MIR 82 135 -127 1908 83 0 0 chr3 115438716 115438958 -112085620 + AluSg SINE Alu 63 304 -6 1394 184 144 43 chr3 115439360 115439734 -112084844 - MSTC LTR MaLR 0 428 17 280 335 29 29 chr3 115441726 115441899 -112082679 - L1ME LINE L1 -340 5781 5609 430 314 209 31 chr3 115442510 115443184 -112081394 - L2 LINE L2 -908 2406 1613 331 206 106 28 chr3 115443257 115443398 -112081180 + L1MC4a LINE L1 5765 5916 -1892 2741 13 0 0 chr3 115443680 115443981 -112080597 - AluYb8 SINE Alu -17 301 1 420 239 98 0 chr3 115444523 115444615 -112079963 - MER81 DNA DNA -13 101 1 220 254 55 0 chr3 115445068 115445123 -112079455 - MIR3 SINE MIR -7 201 144 735 187 22 7 chr3 115445344 115445483 -112079095 - MER8 DNA MER2_type -4 235 95 1919 201 80 21 chr3 115446031 115446508 -112078070 + MLT1D LTR MaLR 1 505 0 381 304 49 49 chr3 115446556 115446760 -112077818 - Charlie8 DNA MER1_type -2152 265 62 244 292 0 46 chr3 115446761 115446891 -112077687 + L1ME LINE L1 5669 5792 -329 582 216 8 30 chr3 115447395 115447529 -112077049 + FRAM SINE Alu 24 154 -22 200 86 29 0 chr3 115447580 115447615 -112076963 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 259 274 16 65 chr3 115447769 115447893 -112076685 + MIR SINE MIR 94 211 -51 22 35 0 0 chr3 115449648 115449677 -112074901 + AT_rich Low_complexity Low_complexity 1 29 0 589 274 69 73 chr3 115449884 115450082 -112074496 - L1MC4a LINE L1 -1882 5926 5729 291 54 0 0 chr3 115450082 115450119 -112074459 + (TG)n Simple_repeat Simple_repeat 2 38 0 589 274 69 73 chr3 115450119 115450372 -112074206 - L1MC4a LINE L1 -2079 5729 5477 751 336 55 33 chr3 115450373 115451142 -112073436 - L1MC4a LINE L1 -750 5396 4677 181 25 0 100 chr3 115451671 115451711 -112072867 + (TTTTA)n Simple_repeat Simple_repeat 4 39 0 651 161 67 13 chr3 115451713 115451862 -112072716 - L1MA4 LINE L1 0 6300 6144 398 188 0 0 chr3 115451865 115451945 -112072633 + L1MA4 LINE L1 6053 6132 -168 645 154 40 179 chr3 115451945 115452146 -112072432 + AluJo SINE Alu 116 288 -24 251 243 56 35 chr3 115452559 115452703 -112071875 - L1MC4a LINE L1 -3314 2832 2686 915 279 154 56 chr3 115452788 115452958 -112071620 - L2 LINE L2 0 3313 3161 2090 92 35 0 chr3 115452958 115453242 -112071336 - AluSg SINE Alu -16 294 1 915 279 154 56 chr3 115453242 115453644 -112070934 - L2 LINE L2 -152 3161 2690 2374 74 0 3 chr3 115453671 115453983 -112070595 + AluY SINE Alu 1 311 0 490 121 77 33 chr3 115454184 115454275 -112070303 + FRAM SINE Alu 65 159 -17 378 313 84 26 chr3 115454810 115455037 -112069541 - HAL1b LINE L1 -655 693 454 23 0 0 0 chr3 115455248 115455271 -112069307 + AT_rich Low_complexity Low_complexity 1 23 0 1731 185 80 14 chr3 115455600 115455951 -112068627 + MLT1A2 LTR MaLR 1 374 0 206 289 154 34 chr3 115456729 115456878 -112067700 - L2 LINE L2 -553 2761 2595 636 165 24 16 chr3 115457191 115457318 -112067260 + MLT1D LTR MaLR 1 128 -377 32 75 0 0 chr3 115457545 115457612 -112066966 + AT_rich Low_complexity Low_complexity 1 67 0 317 232 61 30 chr3 115457723 115457822 -112066756 + L1MC4 LINE L1 6602 6703 -1339 207 100 0 0 chr3 115457822 115457852 -112066726 + (TA)n Simple_repeat Simple_repeat 2 31 0 508 193 11 0 chr3 115457889 115457977 -112066601 + AluJ/FLAM SINE Alu 1 89 -223 396 287 81 84 chr3 115457982 115458239 -112066339 - L2 LINE L2 -817 2497 2240 4969 108 3 12 chr3 115458239 115458991 -112065587 + L1PA14 LINE L1 5415 6159 -2 396 287 81 84 chr3 115458991 115459092 -112065486 - L2 LINE L2 -1074 2240 2140 2047 148 35 22 chr3 115460895 115460961 -112063617 - THE1C LTR MaLR 0 375 311 4364 33 0 0 chr3 115460961 115461513 -112063065 + L1PA4 LINE L1 5633 6184 0 2047 148 35 22 chr3 115461513 115461811 -112062767 - THE1C LTR MaLR -64 311 5 22 25 0 25 chr3 115461842 115461856 -112062722 + AT_rich Low_complexity Low_complexity 1 14 -25 5577 102 14 2 chr3 115461856 115462692 -112061886 - L1MA3 LINE L1 0 7724 6879 22 25 0 25 chr3 115462692 115462717 -112061861 + AT_rich Low_complexity Low_complexity 14 39 0 14156 158 16 29 chr3 115462717 115462741 -112061837 - L1MA3 LINE L1 -675 6912 6889 5954 99 18 26 chr3 115462741 115464106 -112060472 - L1PA14 LINE L1 -4 6157 4786 14156 158 16 29 chr3 115464106 115467430 -112057148 - L1MA3 LINE L1 -698 6889 3524 2158 96 0 53 chr3 115467430 115467753 -112056825 - AluSg SINE Alu -4 306 1 14156 158 16 29 chr3 115467753 115468459 -112056119 - L1MA3 LINE L1 -4063 3524 2916 2844 7 0 0 chr3 115468459 115468764 -112055814 + AluYb8 SINE Alu 12 316 -2 14156 158 16 29 chr3 115468764 115469057 -112055521 - L1MA3 LINE L1 -4671 2916 2621 4963 248 87 13 chr3 115469061 115469122 -112055456 - L1PA12 LINE L1 -2109 5475 5420 2757 161 0 0 chr3 115469122 115469550 -112055028 - MSTA LTR MaLR 0 428 1 4963 248 87 13 chr3 115469550 115472486 -112052092 - L1PA12 LINE L1 -2164 5420 2236 1841 136 174 11 chr3 115472493 115472861 -112051717 + MSTA LTR MaLR 1 428 0 4845 152 8 55 chr3 115472864 115473741 -112050837 + MSTA-int LTR MaLR 4 839 -741 * 6126 178 4 44 chr3 115473739 115474895 -112049683 - L1M1 LINE L1 -5240 2325 1216 30 0 0 0 chr3 115474897 115474927 -112049651 + AT_rich Low_complexity Low_complexity 1 30 0 13902 157 54 17 chr3 115474927 115475291 -112049287 - L1PB1 LINE L1 0 7570 7221 261 0 0 0 chr3 115475291 115475320 -112049258 + (CA)n Simple_repeat Simple_repeat 2 30 0 13902 157 54 17 chr3 115475320 115477957 -112046621 - L1PB1 LINE L1 -349 7221 4684 210 37 0 0 chr3 115477957 115477984 -112046594 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 13902 157 54 17 chr3 115477984 115480998 -112043580 - L1PB1 LINE L1 -2886 4684 1337 943 209 10 0 chr3 115480998 115481194 -112043384 - L1PB1 LINE L1 -6663 903 706 4147 170 8 7 chr3 115481198 115481927 -112042651 - L1PB1 LINE L1 -6697 868 26 2201 93 13 32 chr3 115482519 115482832 -112041746 - AluY SINE Alu -4 307 1 21 36 0 0 chr3 115482835 115482863 -112041715 + AT_rich Low_complexity Low_complexity 1 28 0 5656 42 13 0 chr3 115483360 115484053 -112040525 + L1PA5 LINE L1 5452 6153 -1 229 226 0 0 chr3 115484196 115484249 -112040329 - L1ME3A LINE L1 -9 6161 6109 7516 87 8 20 chr3 115484260 115485330 -112039248 + MER11C LTR ERVK 1 1057 -14 207 167 0 0 chr3 115487313 115487355 -112037223 + A-rich Low_complexity Low_complexity 1 42 0 308 314 12 0 chr3 115487447 115487533 -112037045 + MIR3 SINE MIR 98 184 -24 1888 162 43 3 chr3 115488890 115489242 -112035336 + MER47A DNA MER2_type 1 366 0 460 289 46 54 chr3 115489392 115489631 -112034947 + MLT1L LTR MaLR 379 615 0 3613 213 62 35 chr3 115489926 115490273 -112034305 + L1MCa LINE L1 69 405 -5640 1517 198 96 3 chr3 115490273 115490607 -112033971 - MLT1A1 LTR MaLR 0 365 1 3613 213 62 35 chr3 115490607 115491292 -112033286 + L1MCa LINE L1 405 1048 -4997 846 197 14 0 chr3 115491295 115491442 -112033136 + MER5A DNA MER1_type 14 162 -27 242 208 21 0 chr3 115492260 115492308 -112032270 - L2 LINE L2 0 3313 3265 214 184 35 58 chr3 115492382 115492469 -112032109 + A-rich Low_complexity Low_complexity 5 89 0 1542 199 25 41 chr3 115493085 115493447 -112031131 + MLT1A1 LTR MaLR 10 365 0 2406 174 58 9 chr3 115494373 115494929 -112029649 + L1 LINE L1 3126 3708 -2438 497 289 136 30 chr3 115495324 115495625 -112028953 + HAL1 LINE L1 1423 1755 -752 460 273 102 8 chr3 115495982 115496176 -112028402 - MIR SINE MIR -2 260 1 317 236 69 0 chr3 115496343 115496415 -112028163 - MLT1H1 LTR MaLR -18 537 461 297 267 82 82 chr3 115496422 115496617 -112027961 - MLT1H1 LTR MaLR -208 341 147 214 350 178 19 chr3 115497010 115497167 -112027411 + MIR3 SINE MIR 16 197 -11 20197 176 24 21 chr3 115497275 115503505 -112021073 + L1M1 LINE L1 18 6272 -1293 488 210 48 8 chr3 115554189 115554313 -111970265 + MIR SINE MIR 14 142 -120 264 30 0 0 chr3 115554834 115554840 -111969738 + (CA)n Simple_repeat Simple_repeat 1 39 0 264 30 0 0 chr3 115554840 115554873 -111969705 + (CA)n Simple_repeat Simple_repeat 2 34 0 641 216 89 111 chr3 115555008 115555165 -111969413 + HAL1 LINE L1 1171 1330 -1177 2589 42 0 6 chr3 115555165 115555477 -111969101 + AluY SINE Alu 1 310 -1 641 216 89 111 chr3 115555477 115555744 -111968834 + HAL1 LINE L1 1330 1586 -921 366 310 167 14 chr3 115556252 115556539 -111968039 + HAL1 LINE L1 2169 2499 -8 452 267 87 12 chr3 115556979 115557140 -111967438 + MER5B DNA MER1_type 6 178 0 2747 236 74 13 chr3 115557166 115557937 -111966641 - MER99 DNA DNA -9 819 2 1936 116 0 51 chr3 115558366 115558677 -111965901 + AluSx SINE Alu 7 301 -11 420 274 59 59 chr3 115559091 115559277 -111965301 - MIR SINE MIR -57 205 20 312 91 0 0 chr3 115559382 115559426 -111965152 + (CA)n Simple_repeat Simple_repeat 2 45 0 1953 116 0 75 chr3 115560609 115560929 -111963649 - AluSq SINE Alu -17 296 1 253 376 15 23 chr3 115561908 115562041 -111962537 - L2 LINE L2 0 3272 3141 552 289 48 21 chr3 115562155 115562342 -111962236 + MIR SINE MIR 63 254 -8 306 316 29 46 chr3 115563653 115563827 -111960751 + MARNA DNA Mariner 40 210 -376 254 349 81 10 chr3 115563860 115564058 -111960520 + MARNA DNA Mariner 265 476 -110 195 261 0 0 chr3 115565740 115565786 -111958792 + MIR SINE MIR 96 141 -121 22 0 0 0 chr3 115565800 115565822 -111958756 + AT_rich Low_complexity Low_complexity 1 22 0 4462 155 23 10 chr3 115565837 115566657 -111957921 - L1MA4 LINE L1 -6 6294 5464 189 341 136 0 chr3 115566683 115566771 -111957807 + MIR SINE MIR 163 262 0 315 194 0 0 chr3 115567296 115567394 -111957184 + (TA)n Simple_repeat Simple_repeat 2 99 0 474 65 0 0 chr3 115568686 115568748 -111955830 + (TA)n Simple_repeat Simple_repeat 2 63 0 259 326 136 20 chr3 115568880 115569027 -111955551 - L2 LINE L2 0 3272 3109 348 271 73 20 chr3 115569050 115569201 -111955377 + LTR68 LTR ERV1 7 165 -575 370 294 65 68 chr3 115569295 115569574 -111955004 - MLT1J LTR MaLR -10 501 224 881 197 96 115 chr3 115570314 115570750 -111953828 - MSTC LTR MaLR 0 428 1 866 318 127 51 chr3 115572857 115573107 -111951471 + L3 LINE CR1 674 904 -673 1955 142 71 102 chr3 115573107 115573586 -111950992 - MLT2C2 LTR ERVL 0 464 1 866 318 127 51 chr3 115573586 115574099 -111950479 + L3 LINE CR1 904 1495 -82 25 31 0 0 chr3 115574442 115574474 -111950104 + AT_rich Low_complexity Low_complexity 1 32 0 305 247 21 97 chr3 115575163 115575349 -111949229 + Charlie8 DNA MER1_type 90 261 -2156 330 107 18 0 chr3 115577929 115577985 -111946593 - L1MA4 LINE L1 -9 6291 6235 223 268 0 0 chr3 115579180 115579236 -111945342 + A-rich Low_complexity Low_complexity 1 56 0 1334 226 46 3 chr3 115581686 115582009 -111942569 - MER58B DNA MER1_type -3 338 2 21 0 0 0 chr3 115583231 115583252 -111941326 + AT_rich Low_complexity Low_complexity 1 21 0 234 366 76 23 chr3 115583430 115583561 -111941017 - L2 LINE L2 -2 3270 3133 1041 216 15 0 chr3 115583571 115583770 -111940808 + MER20 DNA MER1_type 18 219 0 307 341 11 0 chr3 115584680 115584768 -111939810 + MER5B DNA MER1_type 89 177 -1 21 0 0 0 chr3 115584889 115584910 -111939668 + AT_rich Low_complexity Low_complexity 1 21 0 355 206 40 143 chr3 115585938 115586161 -111938417 + MER112 DNA MER1_type 3 202 -58 193 208 226 0 chr3 115587243 115587296 -111937282 - MIR SINE MIR -62 146 82 474 65 0 0 chr3 115587409 115587471 -111937107 + (CA)n Simple_repeat Simple_repeat 2 63 0 2387 93 0 0 chr3 115587533 115587833 -111936745 + AluSq SINE Alu 1 300 -13 267 297 83 48 chr3 115588881 115589026 -111935552 - MIR3 SINE MIR -14 194 45 23 0 0 0 chr3 115589962 115589985 -111934593 + AT_rich Low_complexity Low_complexity 1 23 0 314 138 17 0 chr3 115590011 115590069 -111934509 + (TA)n Simple_repeat Simple_repeat 1 59 0 283 253 77 119 chr3 115590726 115591038 -111933540 + L1MC4 LINE L1 7595 7893 -149 210 71 0 0 chr3 115591057 115591085 -111933493 + (TAGA)n Simple_repeat Simple_repeat 2 29 0 239 331 48 16 chr3 115591183 115591307 -111933271 + L2 LINE L2 2428 2555 -759 194 368 0 13 chr3 115591337 115591413 -111933165 + L2 LINE L2 2728 2802 -512 391 298 127 51 chr3 115591526 115591858 -111932720 + L2 LINE L2 2955 3311 -2 26 0 0 0 chr3 115592180 115592206 -111932372 + AT_rich Low_complexity Low_complexity 1 26 0 2191 125 0 0 chr3 115592924 115593227 -111931351 + AluSq SINE Alu 1 303 -10 458 284 26 72 chr3 115594198 115594462 -111930116 + L2 LINE L2 3048 3299 -14 533 293 123 14 chr3 115594568 115594780 -111929798 + MIR SINE MIR 10 244 -18 2349 63 3 10 chr3 115594824 115595126 -111929452 - AluY SINE Alu -11 300 1 353 259 176 24 chr3 115595359 115595529 -111929049 + MIR SINE MIR 53 248 -14 255 393 86 8 chr3 115596730 115596847 -111927731 - MER91A DNA MER1_type -70 126 1 2473 66 0 0 chr3 115596935 115597239 -111927339 - AluY SINE Alu -7 304 1 22 0 0 0 chr3 115597633 115597655 -111926923 + AT_rich Low_complexity Low_complexity 1 22 0 228 343 96 41 chr3 115597848 115598067 -111926511 + MIR SINE MIR 26 256 -6 328 256 144 33 chr3 115600868 115601138 -111923440 - L1MC5 LINE L1 -30 7931 7632 432 242 67 46 chr3 115601173 115601413 -111923165 - L1MC5 LINE L1 -425 7536 7292 533 300 106 51 chr3 115601452 115601922 -111922656 - L2 LINE L2 -575 2739 2244 186 43 0 0 chr3 115602029 115602052 -111922526 + (A)n Simple_repeat Simple_repeat 1 23 0 425 323 30 18 chr3 115602617 115602784 -111921794 + MER5A DNA MER1_type 21 189 0 3851 155 30 4 chr3 115602840 115603532 -111921046 - MER67C LTR ERV1 0 710 1 441 66 0 0 chr3 115603602 115603663 -111920915 + (CA)n Simple_repeat Simple_repeat 2 62 0 23 92 0 0 chr3 115603668 115603733 -111920845 + AT_rich Low_complexity Low_complexity 1 65 0 24 0 0 0 chr3 115604921 115604945 -111919633 + AT_rich Low_complexity Low_complexity 1 24 0 486 267 170 0 chr3 115606839 115606974 -111917604 + MER5A DNA MER1_type 32 189 0 22 0 0 0 chr3 115607201 115607223 -111917355 + AT_rich Low_complexity Low_complexity 1 22 0 454 337 146 3 chr3 115607666 115607960 -111916618 + L2 LINE L2 2152 2487 -827 325 289 115 19 chr3 115608090 115608246 -111916332 + L2 LINE L2 3134 3304 -9 2227 113 0 0 chr3 115608369 115608662 -111915916 - AluSc SINE Alu -16 293 1 688 309 71 30 chr3 115608675 115609138 -111915440 + Tigger8 DNA MER2_type 48 529 -137 410 303 83 64 chr3 115610449 115610667 -111913911 + L2 LINE L2 2939 3160 -112 1576 204 39 0 chr3 115610671 115610980 -111913598 + Tigger7 DNA MER2_type 1 321 -2166 977 169 17 0 chr3 115610994 115611166 -111913412 + Tigger7 DNA MER2_type 2313 2487 0 366 369 127 16 chr3 115611250 115611494 -111913084 - L2 LINE L2 -59 3213 2943 692 232 31 21 chr3 115611548 115611742 -111912836 - L1ME3 LINE L1 -9 6153 5958 454 331 112 29 chr3 115611809 115612123 -111912455 - L2 LINE L2 -452 2862 2523 1792 165 59 82 chr3 115612812 115613286 -111911292 - MLT1C LTR MaLR -4 463 1 387 0 0 0 chr3 115613413 115613456 -111911122 + (TG)n Simple_repeat Simple_repeat 1 43 0 335 313 16 23 chr3 115614950 115615078 -111909500 - MER20B DNA MER1_type -612 171 45 2119 124 0 0 chr3 115615872 115616155 -111908423 + AluSx SINE Alu 1 283 -29 206 286 132 0 chr3 115616840 115616931 -111907647 - L2 LINE L2 0 3272 3170 464 47 0 16 chr3 115617825 115617889 -111906689 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 290 264 164 9 chr3 115618656 115618766 -111905812 - L2 LINE L2 0 3313 3187 2615 39 0 3 chr3 115620102 115620414 -111904164 + AluY SINE Alu 1 311 0 1374 142 37 64 chr3 115620990 115621286 -111903292 - L1MC2 LINE L1 -29 6315 6028 629 184 58 58 chr3 115622321 115622527 -111902051 + MSTC LTR MaLR 223 428 0 654 255 65 22 chr3 115622681 115622772 -111901806 - MER58C DNA MER1_type -2205 215 129 297 118 0 0 chr3 115622772 115622823 -111901755 + (TTGG)n Simple_repeat Simple_repeat 2 52 0 654 255 65 22 chr3 115622823 115622915 -111901663 - MER58C DNA MER1_type -2291 129 24 755 231 152 48 chr3 115622993 115623489 -111901089 - MLT1G1 LTR MaLR -5 590 2 21 0 0 0 chr3 115625303 115625324 -111899254 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr3 115626215 115626248 -111898330 + AT_rich Low_complexity Low_complexity 1 33 0 1063 211 15 0 chr3 115627252 115627451 -111897127 + MER20 DNA MER1_type 18 219 0 21 0 0 0 chr3 115629696 115629717 -111894861 + GC_rich Low_complexity Low_complexity 1 21 0 787 104 4 121 chr3 115630397 115630646 -111893932 + AluYa5 SINE Alu 89 308 -3 634 249 75 0 chr3 115631446 115631619 -111892959 + MER5A DNA MER1_type 4 189 0 508 332 63 10 chr3 115631903 115632108 -111892470 + MIR SINE MIR 20 235 -27 404 237 263 21 chr3 115632210 115632404 -111892174 + MIR SINE MIR 12 252 -10 1575 101 0 9 chr3 115632557 115632784 -111891794 - pTR5 LTR ERV1 -2042 396 172 282 242 30 20 chr3 115632790 115632889 -111891689 - LTR30 LTR ERV1 -79 643 544 3142 126 93 78 chr3 115632889 115633597 -111890981 - pTR5 LTR ERV1 -413 2025 1172 284 162 51 154 chr3 115633649 115633766 -111890812 + MIR SINE MIR 99 203 -59 1738 193 41 3 chr3 115633869 115634231 -111890347 - L1PB4 LINE L1 -88 6068 5693 2097 160 17 14 chr3 115634412 115634774 -111889804 + MLT1A1 LTR MaLR 3 365 0 22 80 0 0 chr3 115635625 115635675 -111888903 + AT_rich Low_complexity Low_complexity 1 50 0 1047 55 0 0 chr3 115636160 115636287 -111888291 + AluY SINE Alu 153 279 -32 7511 27 0 2 chr3 115636287 115637226 -111887352 + L1PA4 LINE L1 5230 6166 0 44 70 0 0 chr3 115637226 115637312 -111887266 + AT_rich Low_complexity Low_complexity 1 86 0 207 0 0 0 chr3 115637330 115637353 -111887225 + (GA)n Simple_repeat Simple_repeat 1 23 0 287 317 67 30 chr3 115637360 115637524 -111887054 - L2 LINE L2 -493 2821 2652 350 248 16 0 chr3 115637673 115637798 -111886780 + A-rich Low_complexity Low_complexity 4 130 0 285 128 0 0 chr3 115639334 115639381 -111885197 + (TG)n Simple_repeat Simple_repeat 2 48 0 317 345 90 7 chr3 115640293 115640438 -111884140 + MIR SINE MIR 48 204 -58 220 301 40 87 chr3 115640443 115640616 -111883962 - L2 LINE L2 -5 3308 3144 1037 228 53 4 chr3 115642469 115642697 -111881881 + MER8 DNA MER2_type 1 239 0 26 0 0 0 chr3 115642957 115642983 -111881595 + AT_rich Low_complexity Low_complexity 1 26 0 238 306 96 20 chr3 115643005 115643204 -111881374 + L2 LINE L2 1348 1561 -1753 1149 154 62 11 chr3 115643204 115643476 -111881102 + MER33 DNA MER1_type 39 324 0 1371 326 153 43 chr3 115643478 115644257 -111880321 + L2 LINE L2 1560 2252 -1061 1089 174 42 42 chr3 115644257 115644493 -111880085 + MER46A DNA MER2_type 1 236 0 1371 326 153 43 chr3 115644493 115645254 -111879324 + L2 LINE L2 2252 3289 -24 272 277 30 40 chr3 115646536 115646637 -111877941 + L2 LINE L2 3173 3272 0 687 283 25 5 chr3 115648237 115648435 -111876143 - MIR SINE MIR -41 221 20 288 317 43 24 chr3 115648611 115648819 -111875759 + HAL1b LINE L1 226 437 -911 267 273 0 0 chr3 115648826 115648892 -111875686 + HAL1b LINE L1 483 548 -800 366 248 84 23 chr3 115649457 115649742 -111874836 + L1 LINE L1 2758 3068 -3078 839 238 71 37 chr3 115649845 115649977 -111874601 + LTR37A LTR ERV1 1 127 -299 2510 160 75 6 chr3 115649977 115650457 -111874121 + L1PA16 LINE L1 5652 6164 -2 839 238 71 37 chr3 115650457 115650732 -111873846 + LTR37A LTR ERV1 127 422 -4 349 261 108 56 chr3 115650790 115651096 -111873482 + L1 LINE L1 3083 3404 -2742 2862 100 44 14 chr3 115651230 115651606 -111872972 + MLT2A1 LTR ERVL 1 393 -51 860 29 0 0 chr3 115651606 115651709 -111872869 + L1PA4 LINE L1 6050 6152 -3 2862 100 44 14 chr3 115651709 115651763 -111872815 + MLT2A1 LTR ERVL 393 444 0 884 224 138 43 chr3 115651966 115652118 -111872460 + MLT1C LTR MaLR 6 142 -325 1557 195 0 14 chr3 115652118 115652400 -111872178 + AluJo SINE Alu 5 282 -30 884 224 138 43 chr3 115652400 115652617 -111871961 + MLT1C LTR MaLR 142 410 -57 459 294 104 57 chr3 115652618 115652917 -111871661 - L2 LINE L2 -528 2786 2474 24 0 0 0 chr3 115653047 115653071 -111871507 + AT_rich Low_complexity Low_complexity 1 24 0 341 351 18 23 chr3 115653341 115653512 -111871066 + MIR SINE MIR 74 243 -19 212 0 0 35 chr3 115653550 115653579 -111870999 + (TTA)n Simple_repeat Simple_repeat 1 28 0 469 188 12 12 chr3 115653712 115653797 -111870781 + MER21B LTR ERV1 5 89 -774 1138 214 121 102 chr3 115653842 115654304 -111870274 + MER21B LTR ERV1 48 518 -345 2157 130 3 0 chr3 115654860 115655160 -111869418 - AluSx SINE Alu -11 301 1 1674 169 37 49 chr3 115655265 115655430 -111869148 + MER2 DNA MER2_type 1 166 -179 2460 125 35 28 chr3 115655430 115655861 -111868717 - Tigger2a DNA MER2_type 0 434 1 1674 169 37 49 chr3 115655861 115656044 -111868534 + MER2 DNA MER2_type 166 345 0 1915 190 9 6 chr3 115656050 115656397 -111868181 + MER7A DNA MER2_type 1 346 0 345 373 33 9 chr3 115656407 115656619 -111867959 + MIR SINE MIR 40 256 -6 234 136 0 0 chr3 115659247 115659291 -111865287 + (T)n Simple_repeat Simple_repeat 1 44 0 13401 32 1 2 chr3 115659292 115661685 -111862893 - L1PA3 LINE L1 -3 6152 3767 2048 125 152 13 chr3 115662472 115662848 -111861730 + MSTA LTR MaLR 1 428 0 1968 154 13 0 chr3 115662981 115663287 -111861291 - AluJb SINE Alu -2 310 1 625 106 21 0 chr3 115663974 115664068 -111860510 - LTR48B LTR ERV1 -10 634 539 842 191 12 6 chr3 115664070 115664232 -111860346 + FRAM SINE Alu 1 163 -13 2417 190 138 22 chr3 115664239 115664861 -111859717 - LTR48 LTR ERV1 -93 694 1 811 309 83 0 chr3 115664986 115665287 -111859291 - LTR16A LTR ERVL 0 450 125 2188 197 60 111 chr3 115665303 115666034 -111858544 + LTR8A LTR ERV1 34 727 0 312 133 22 156 chr3 115667298 115667388 -111857190 + MLT1A1 LTR MaLR 1 78 -287 2580 128 99 2 chr3 115667389 115667834 -111856744 - LTR21A LTR ERV1 -17 488 1 1062 221 16 40 chr3 115667855 115668104 -111856474 + MLT1A1 LTR MaLR 122 364 -1 502 291 0 0 chr3 115668321 115668431 -111856147 - FLAM_A SINE Alu -28 114 5 536 45 0 91 chr3 115670139 115670227 -111854351 + L1PA4 LINE L1 6076 6155 0 1718 150 10 48 chr3 115670463 115670777 -111853801 - AluJo SINE Alu -10 302 1 2059 198 67 58 chr3 115670885 115671455 -111853123 - MER92B LTR ERV1 0 636 62 242 243 13 27 chr3 115671456 115671558 -111853020 + MER34 LTR ERV1 1 122 -420 * 435 276 36 73 chr3 115671531 115671723 -111852855 + MER39 LTR ERV1 260 444 -263 1204 203 70 73 chr3 115671726 115672096 -111852482 + MSTD LTR MaLR 4 372 -24 1237 186 54 4 chr3 115672164 115672406 -111852172 + MSTD-int LTR MaLR 1457 1710 -25 1260 263 61 11 chr3 115672427 115672804 -111851774 + MSTD LTR MaLR 1 396 0 1127 196 35 15 chr3 115672804 115673064 -111851514 + MER39 LTR ERV1 443 707 0 451 81 0 16 chr3 115673074 115673136 -111851442 - MER92B LTR ERV1 -575 61 1 845 211 277 51 chr3 115673323 115673717 -111850861 - MER31B LTR ERV1 -2 483 1 1323 118 6 0 chr3 115674133 115674354 -111850224 + AluSc SINE Alu 101 322 0 259 299 47 31 chr3 115675999 115676126 -111848452 - MIR SINE MIR -63 145 17 398 314 41 8 chr3 115678717 115678838 -111845740 + L2 LINE L2 3142 3266 -6 415 286 140 29 chr3 115678874 115679045 -111845533 + MIR3 SINE MIR 16 205 -3 262 367 38 19 chr3 115680390 115680600 -111843978 + LTR33 LTR ERVL 301 514 -7 638 259 56 9 chr3 115680764 115681011 -111843567 + LTR16A LTR ERVL 182 457 0 603 227 21 14 chr3 115683007 115683148 -111841430 + MLT1E1 LTR MaLR 12 153 -501 1278 216 102 71 chr3 115683223 115683662 -111840916 - LTR1B LTR ERV1 -37 789 337 1589 145 55 31 chr3 115683667 115683869 -111840709 + LTR23 LTR ERV1 105 319 -118 2307 90 7 3 chr3 115683869 115684168 -111840410 + AluY SINE Alu 2 301 -10 1589 145 55 31 chr3 115684168 115684290 -111840288 + LTR23 LTR ERV1 319 437 0 2073 144 119 16 chr3 115684397 115684785 -111839793 + MSTA LTR MaLR 1 428 0 476 215 242 27 chr3 115684834 115684983 -111839595 + MIR SINE MIR 3 183 -79 342 271 89 67 chr3 115685042 115685267 -111839311 - MLT1K LTR MaLR -50 538 309 994 135 11 6 chr3 115685315 115685493 -111839085 + GA-rich Low_complexity Low_complexity 2 180 0 1630 224 46 24 chr3 115685699 115686154 -111838424 + MLT1C LTR MaLR 1 465 -2 1844 133 28 14 chr3 115686267 115686553 -111838025 + AluSg SINE Alu 1 290 -20 216 297 77 11 chr3 115687037 115687128 -111837450 - MIR SINE MIR -66 196 100 1662 224 75 33 chr3 115687146 115687627 -111836951 + MLT1D LTR MaLR 5 505 0 553 207 14 48 chr3 115687648 115687793 -111836785 - MIR SINE MIR -51 211 72 256 384 18 0 chr3 115687793 115687905 -111836673 - MER81 DNA DNA 0 114 1 2424 117 28 14 chr3 115688205 115688564 -111836014 + THE1B LTR MaLR 1 364 0 264 122 0 0 chr3 115689246 115689287 -111835291 + (TG)n Simple_repeat Simple_repeat 2 42 0 373 182 33 44 chr3 115689294 115689558 -111835020 + (TATAA)n Simple_repeat Simple_repeat 1 261 0 444 254 111 50 chr3 115689559 115689740 -111834838 - MIR SINE MIR -58 204 13 2345 79 10 0 chr3 115690281 115690584 -111833994 + AluY SINE Alu 1 306 -5 186 323 156 5 chr3 115690611 115690797 -111833781 - L2 LINE L2 -252 3020 2807 374 123 46 0 chr3 115691082 115691147 -111833431 - L1MA5A LINE L1 -10 6287 6220 1963 154 141 3 chr3 115691487 115691863 -111832715 - MSTA LTR MaLR 0 428 1 8958 176 20 9 chr3 115691863 115693496 -111831082 - MSTA-int LTR MaLR 0 1651 1 2002 134 156 5 chr3 115693496 115693868 -111830710 - MSTA LTR MaLR 0 428 1 273 179 54 0 chr3 115695415 115695471 -111829107 + L2 LINE L2 3255 3313 0 1061 208 176 141 chr3 115695570 115696166 -111828412 + MLT1E2 LTR MaLR 10 626 0 230 355 103 28 chr3 115696338 115696628 -111827950 - L3b LINE CR1 -155 1428 1117 1708 185 3 24 chr3 115697790 115698120 -111826458 + MLT2C1 LTR ERVL 3 325 -72 252 259 127 54 chr3 115698652 115698818 -111825760 - MIR SINE MIR 0 262 85 211 363 0 0 chr3 115698819 115698899 -111825679 + L2 LINE L2 3229 3308 -5 356 235 0 118 chr3 115698926 115699045 -111825533 - MIR SINE MIR -74 134 30 459 358 208 3 chr3 115700128 115700488 -111824090 + L2 LINE L2 2862 3295 -18 201 298 23 117 chr3 115700754 115700925 -111823653 + MIR SINE MIR 67 221 -41 260 169 0 17 chr3 115701897 115701956 -111822622 + (TA)n Simple_repeat Simple_repeat 2 59 0 1154 198 91 8 chr3 115701972 115702102 -111822476 - AluJo SINE Alu -44 268 150 224 29 0 29 chr3 115702102 115702136 -111822442 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 1154 198 91 8 chr3 115702136 115702247 -111822331 - AluJo SINE Alu -162 150 7 1954 135 50 0 chr3 115703557 115703854 -111820724 + AluSx SINE Alu 1 312 0 1866 119 27 52 chr3 115703897 115704266 -111820312 + L1MA5 LINE L1 5940 6299 -1 218 174 43 0 chr3 115704995 115705041 -111819537 + (AATTG)n Simple_repeat Simple_repeat 3 50 0 1010 171 10 10 chr3 115706543 115706742 -111817836 + L1MB3 LINE L1 5981 6179 -4 691 224 61 7 chr3 115707859 115708029 -111816549 - MIR SINE MIR -26 236 57 2071 140 0 3 chr3 115708167 115708467 -111816111 - AluSx SINE Alu -13 299 1 1805 72 30 19 chr3 115708590 115708855 -111815723 - L1PA8 LINE L1 0 6172 5905 194 0 39 0 chr3 115708910 115708936 -111815642 + (TTTTC)n Simple_repeat Simple_repeat 2 28 0 1758 134 0 46 chr3 115708939 115709223 -111815355 - AluJb SINE Alu -26 286 16 249 279 48 19 chr3 115709233 115709337 -111815241 - L1ME LINE L1 -215 5906 5800 388 276 218 31 chr3 115710558 115710851 -111813727 + L2 LINE L2 1315 1662 -1652 406 276 151 31 chr3 115710898 115711090 -111813488 + MIR SINE MIR 48 262 0 322 304 104 25 chr3 115711090 115711330 -111813248 + L2 LINE L2 1661 1919 -1395 278 196 0 0 chr3 115711713 115711759 -111812819 + MER94 DNA DNA 15 60 -74 269 311 67 0 chr3 115711953 115712043 -111812535 - LTR16A1 LTR ERVL -356 101 6 30 27 0 0 chr3 115713477 115713514 -111811064 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr3 115715116 115715144 -111809434 + AT_rich Low_complexity Low_complexity 1 28 0 25 65 0 0 chr3 115715163 115715209 -111809369 + AT_rich Low_complexity Low_complexity 1 46 0 183 156 0 0 chr3 115715626 115715658 -111808920 + T-rich Low_complexity Low_complexity 1 32 0 6541 70 7 0 chr3 115715789 115717146 -111807432 - L1PA7 LINE L1 0 6154 4798 348 109 0 0 chr3 115717146 115717192 -111807386 + L1P3 LINE L1 313 358 -6103 347 296 34 0 chr3 115717238 115717326 -111807252 - L2 LINE L2 -6 3307 3217 707 282 112 29 chr3 115717860 115718236 -111806342 - L2 LINE L2 -604 2710 2304 1037 162 0 32 chr3 115718417 115718602 -111805976 + MLT1B LTR MaLR 1 179 -211 9608 236 52 33 chr3 115718650 115720513 -111804065 + L1M2 LINE L1 252 2077 -3893 195 100 0 0 chr3 115720513 115720543 -111804035 + (CA)n Simple_repeat Simple_repeat 1 30 0 9608 236 52 33 chr3 115720543 115720835 -111803743 + L1M2 LINE L1 2077 2362 -3608 216 0 0 0 chr3 115720835 115720859 -111803719 + (CA)n Simple_repeat Simple_repeat 2 25 0 9608 236 52 33 chr3 115720859 115723284 -111801294 + L1M2 LINE L1 2362 4621 -1349 1466 184 92 51 chr3 115723284 115723718 -111800860 + MER57-int LTR ERV1 2757 3208 -1728 198 258 41 72 chr3 115723719 115723816 -111800762 - L2 LINE L2 -845 2469 2376 2215 190 13 47 chr3 115723816 115724353 -111800225 + MER57-int LTR ERV1 5176 5694 -1843 2765 169 18 54 chr3 115724361 115725429 -111799149 + L1M2 LINE L1 4586 5615 -521 5048 151 22 20 chr3 115725429 115726276 -111798302 - Tigger2 DNA MER2_type 0 2718 1870 1458 147 17 90 chr3 115726422 115726721 -111797857 - AluJo SINE Alu -35 277 1 393 333 155 5 chr3 115726768 115726981 -111797597 + MIR SINE MIR 18 262 0 184 219 0 0 chr3 115727030 115727062 -111797516 - MIR SINE MIR -115 147 116 1979 115 10 14 chr3 115728127 115728415 -111796163 - AluSc SINE Alu -22 287 1 26 0 0 0 chr3 115728422 115728448 -111796130 + AT_rich Low_complexity Low_complexity 1 26 0 194 327 112 19 chr3 115728879 115728986 -111795592 + L2 LINE L2 3194 3310 -3 244 284 63 58 chr3 115729352 115729542 -111795036 - L1MA9 LINE L1 -38 6274 6084 1580 254 18 10 chr3 115729680 115730073 -111794505 + MSTD LTR MaLR 1 396 0 1269 204 47 7 chr3 115730269 115730548 -111794030 - L1MD2 LINE L1 -13 6346 6057 1246 181 165 28 chr3 115731983 115732419 -111792159 + LTR54B LTR ERV1 1 496 -2 306 128 0 0 chr3 115732921 115732968 -111791610 - MLT2B1 LTR ERVL -473 47 1 21 0 0 0 chr3 115734084 115734105 -111790473 + AT_rich Low_complexity Low_complexity 1 21 0 486 281 37 0 chr3 115734595 115734730 -111789848 - MLT1K LTR MaLR -2 586 447 269 255 105 72 chr3 115736953 115737106 -111787472 + L3b LINE CR1 1104 1261 -322 596 49 12 0 chr3 115739663 115739745 -111784833 - L1MA1 LINE L1 -4 6298 6216 2296 79 0 35 chr3 115739841 115740157 -111784421 + AluY SINE Alu 7 311 0 376 296 119 8 chr3 115741110 115741370 -111783208 + L1ME4a LINE L1 5501 5789 -332 318 236 115 13 chr3 115741545 115741702 -111782876 + L1ME4a LINE L1 5927 6099 -22 192 184 0 46 chr3 115742816 115742903 -111781675 + A-rich Low_complexity Low_complexity 2 84 0 1264 278 101 24 chr3 115743489 115743914 -111780664 + L1MC4a LINE L1 4724 4748 -1398 396 0 0 0 chr3 115743914 115743958 -111780620 + (CA)n Simple_repeat Simple_repeat 2 45 0 1264 278 101 24 chr3 115743958 115744664 -111779914 + L1MC4a LINE L1 4748 5398 -748 240 315 96 14 chr3 115745345 115745418 -111779160 - L2 LINE L2 0 3272 3194 327 49 0 0 chr3 115746796 115746837 -111777741 + (CA)n Simple_repeat Simple_repeat 1 41 0 2169 101 0 0 chr3 115746858 115747145 -111777433 - AluSg SINE Alu -10 300 14 391 298 21 0 chr3 115747179 115747320 -111777258 + LTR33 LTR ERVL 24 167 -354 249 241 76 13 chr3 115747427 115747506 -111777072 + LTR33 LTR ERVL 429 512 -9 226 273 30 0 chr3 115747588 115747654 -111776924 + (CATA)n Simple_repeat Simple_repeat 3 70 0 259 372 31 16 chr3 115747737 115747866 -111776712 + MIR SINE MIR 17 147 -61 2371 90 0 0 chr3 115748332 115748631 -111775947 + AluSx SINE Alu 1 299 -13 2261 124 52 9 chr3 115748944 115749292 -111775286 - THE1B LTR MaLR 0 364 2 21 36 0 0 chr3 115749664 115749692 -111774886 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 115749792 115749814 -111774764 + AT_rich Low_complexity Low_complexity 1 22 0 312 286 62 9 chr3 115750488 115750600 -111773978 - L2 LINE L2 -31 3241 3124 378 233 0 29 chr3 115752131 115752234 -111772344 + MIR SINE MIR 122 221 -41 300 167 19 0 chr3 115755995 115756049 -111768529 + Tigger5 DNA MER2_type 1 55 -2268 390 247 0 0 chr3 115756061 115756146 -111768432 + Tigger5 DNA MER2_type 2239 2323 0 25 75 0 0 chr3 115756875 115756928 -111767650 + AT_rich Low_complexity Low_complexity 1 53 0 862 153 0 15 chr3 115757858 115757995 -111766583 + AluJo SINE Alu 1 135 -177 232 307 27 41 chr3 115758957 115759250 -111765328 - L1M4 LINE L1 -1544 4602 4314 2056 127 14 0 chr3 115759418 115759710 -111764868 - AluSx SINE Alu -16 296 1 483 325 112 0 chr3 115761595 115761792 -111762786 - MLT1J LTR MaLR 0 511 293 421 254 106 0 chr3 115761833 115761975 -111762603 - MLT1J LTR MaLR -299 212 56 1390 147 96 39 chr3 115762244 115762427 -111762151 + THE1C LTR MaLR 1 172 -285 216 0 0 0 chr3 115762427 115762451 -111762127 + (TC)n Simple_repeat Simple_repeat 1 24 0 1390 147 96 39 chr3 115762451 115762593 -111761985 + THE1C LTR MaLR 172 429 -28 5651 172 60 15 chr3 115762647 115763750 -111760828 + THE1C-int LTR MaLR 427 1578 -2 1415 158 64 42 chr3 115763752 115764063 -111760515 + THE1C LTR MaLR 1 318 -57 2961 3 0 0 chr3 115765417 115765735 -111758843 + AluYb8 SINE Alu 1 318 0 9345 237 59 34 chr3 115765810 115767669 -111756909 + L1M2 LINE L1 996 2807 -3925 195 100 0 0 chr3 115767669 115767699 -111756879 + (CA)n Simple_repeat Simple_repeat 1 30 0 9345 237 59 34 chr3 115767699 115767995 -111756583 + L1M2 LINE L1 2807 3094 -3638 216 0 0 0 chr3 115767995 115768019 -111756559 + (CA)n Simple_repeat Simple_repeat 2 25 0 9345 237 59 34 chr3 115768019 115770445 -111754133 + L1M2 LINE L1 3094 5383 -1349 1420 184 92 51 chr3 115770445 115770879 -111753699 + MER57-int LTR ERV1 2757 3208 -1728 199 258 41 72 chr3 115770880 115770977 -111753601 - L2 LINE L2 -845 2469 2376 2190 190 13 47 chr3 115770977 115771514 -111753064 + MER57-int LTR ERV1 5176 5694 -1843 216 0 0 0 chr3 115771520 115771544 -111753034 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2734 167 18 52 chr3 115771549 115772590 -111751988 + L1M2 LINE L1 5372 6377 -521 5028 151 22 20 chr3 115772590 115773437 -111751141 - Tigger2 DNA MER2_type 0 2718 1870 1485 147 17 90 chr3 115773583 115773882 -111750696 - AluJo SINE Alu -35 277 1 379 335 156 5 chr3 115773929 115774141 -111750437 + MIR SINE MIR 18 261 -1 2036 111 10 14 chr3 115775287 115775575 -111749003 - AluSc SINE Alu -22 287 1 26 0 0 0 chr3 115775582 115775608 -111748970 + AT_rich Low_complexity Low_complexity 1 26 0 199 328 112 17 chr3 115776030 115776146 -111748432 + L2 LINE L2 3184 3310 -3 1587 254 18 10 chr3 115776840 115777233 -111747345 + MSTD LTR MaLR 1 396 0 1264 204 47 7 chr3 115777429 115777708 -111746870 - L1MD2 LINE L1 -13 6346 6057 1233 184 165 28 chr3 115779143 115779579 -111744999 + LTR54B LTR ERV1 1 496 -2 308 128 0 0 chr3 115780081 115780128 -111744450 - MLT2B1 LTR ERVL -473 47 1 21 0 0 0 chr3 115781245 115781266 -111743312 + AT_rich Low_complexity Low_complexity 1 21 0 479 281 37 0 chr3 115781756 115781891 -111742687 - MLT1K LTR MaLR -2 586 447 207 0 0 0 chr3 115783363 115783386 -111741192 + (TTA)n Simple_repeat Simple_repeat 2 24 0 716 263 63 33 chr3 115783692 115783993 -111740585 - MER46C DNA MER2_type 0 338 29 1869 144 14 3 chr3 115784905 115785197 -111739381 + AluSx SINE Alu 1 295 -17 225 326 22 0 chr3 115785618 115785710 -111738868 + MIR3 SINE MIR 112 205 -3 1748 144 25 7 chr3 115785897 115786174 -111738404 + AluSx SINE Alu 5 286 -26 335 395 16 0 chr3 115786279 115786408 -111738170 + MIR SINE MIR 20 150 -112 235 278 40 87 chr3 115786890 115787016 -111737562 - L3b LINE CR1 -122 1461 1342 197 139 23 0 chr3 115788167 115788210 -111736368 + (TTTAG)n Simple_repeat Simple_repeat 2 45 0 1741 171 7 3 chr3 115788457 115788744 -111735834 - AluSx SINE Alu -22 290 3 348 304 76 43 chr3 115788918 115789102 -111735476 + MIR SINE MIR 3 192 -70 305 279 13 13 chr3 115790263 115790342 -111734236 + L2 LINE L2 2915 2993 -279 1630 181 7 20 chr3 115790793 115791097 -111733481 + AluJo SINE Alu 13 312 0 433 181 106 0 chr3 115791306 115791400 -111733178 + MER103 DNA DNA 1 104 -62 717 272 109 13 chr3 115791520 115791759 -111732819 + MIR SINE MIR 1 262 0 718 266 47 40 chr3 115792334 115792609 -111731969 - MLT1J LTR MaLR -56 455 179 37 23 0 0 chr3 115792997 115793041 -111731537 + AT_rich Low_complexity Low_complexity 1 44 0 23 0 0 0 chr3 115793206 115793229 -111731349 + AT_rich Low_complexity Low_complexity 1 23 0 248 321 12 0 chr3 115793257 115793338 -111731240 - MIR SINE MIR -73 189 108 2226 116 0 6 chr3 115795361 115795672 -111728906 + AluSx SINE Alu 2 310 -2 213 342 123 7 chr3 115795890 115796045 -111728533 - L2 LINE L2 -879 2435 2263 186 401 7 33 chr3 115796388 115796540 -111728038 - L2 LINE L2 -309 2963 2816 517 282 12 40 chr3 115796887 115797099 -111727479 + MLT1F LTR MaLR 18 235 -354 2285 116 0 0 chr3 115797106 115797416 -111727162 + AluSx SINE Alu 2 311 -1 315 171 62 159 chr3 115797528 115797704 -111726874 + MLT1F1 LTR MaLR 352 535 -32 306 321 64 21 chr3 115798365 115798505 -111726073 - L2 LINE L2 0 3313 3168 2250 111 3 3 chr3 115799088 115799394 -111725184 + AluSg SINE Alu 1 306 -4 344 290 33 79 chr3 115801438 115801652 -111722926 - MIR3 SINE MIR -3 205 2 28 61 0 0 chr3 115802354 115802403 -111722175 + AT_rich Low_complexity Low_complexity 1 49 0 353 85 0 17 chr3 115802690 115802749 -111721829 + (TTTA)n Simple_repeat Simple_repeat 3 60 0 355 171 49 0 chr3 115803360 115803442 -111721136 - L1MB5 LINE L1 0 6174 6089 237 355 32 16 chr3 115803485 115803609 -111720969 + MIR SINE MIR 19 144 -64 242 245 66 94 chr3 115803610 115803716 -111720862 - MER5A DNA MER1_type 0 189 87 322 386 121 5 chr3 115806173 115806388 -111718190 - L2 LINE L2 -337 2977 2738 2541 30 0 7 chr3 115806974 115807271 -111717307 + AluY SINE Alu 1 295 -16 222 253 24 36 chr3 115807361 115807444 -111717134 + L2 LINE L2 3185 3266 -6 237 83 0 0 chr3 115808583 115808619 -111715959 + (CA)n Simple_repeat Simple_repeat 1 36 0 26 30 0 0 chr3 115809289 115809322 -111715256 + AT_rich Low_complexity Low_complexity 1 33 0 294 207 12 24 chr3 115810128 115810210 -111714368 - MLT1K LTR MaLR -1 587 507 316 296 0 9 chr3 115810300 115810408 -111714170 + CT-rich Low_complexity Low_complexity 2 108 0 595 296 29 21 chr3 115810808 115811048 -111713530 + L1MEc LINE L1 461 702 -6123 761 271 69 71 chr3 115811625 115812565 -111712013 + L1MEc LINE L1 1033 2079 -4565 2119 102 10 16 chr3 115812590 115812894 -111711684 + AluSq SINE Alu 1 302 -11 388 208 46 12 chr3 115812895 115813111 -111711467 + (TA)n Simple_repeat Simple_repeat 1 223 0 1805 199 0 38 chr3 115813243 115813460 -111711118 - MLT1A1 LTR MaLR 0 365 166 2395 60 0 10 chr3 115813460 115813760 -111710818 - AluY SINE Alu -14 297 1 1805 199 0 38 chr3 115813760 115813914 -111710664 - MLT1A1 LTR MaLR -199 166 8 692 223 29 17 chr3 115813914 115814152 -111710426 + L1MEc LINE L1 3209 3449 -3195 614 252 137 11 chr3 115814155 115814528 -111710050 + L1MEc LINE L1 3475 3894 -2750 2756 248 107 19 chr3 115814532 115814872 -111709706 + L1MEc LINE L1 4056 4364 -2280 2047 115 49 25 chr3 115814872 115815238 -111709340 - THE1C LTR MaLR 0 375 1 2756 248 107 19 chr3 115815238 115816117 -111708461 + L1MEc LINE L1 4364 5383 -1261 184 376 43 26 chr3 115816206 115816323 -111708255 - MIR3 SINE MIR -87 121 3 2406 70 0 13 chr3 115818224 115818539 -111706039 + AluY SINE Alu 1 311 0 192 310 90 55 chr3 115820863 115821008 -111703570 - MIR SINE MIR -55 207 58 231 180 0 33 chr3 115821287 115821348 -111703230 + (TGAA)n Simple_repeat Simple_repeat 2 60 0 305 297 55 55 chr3 115821792 115821920 -111702658 + L2 LINE L2 3145 3272 0 229 231 31 15 chr3 115823156 115823221 -111701357 - LTR33 LTR ERVL -446 75 10 205 306 81 0 chr3 115823245 115823307 -111701271 + MIR SINE MIR 76 142 -66 1908 146 89 17 chr3 115823709 115824059 -111700519 - THE1C LTR MaLR 0 375 1 7087 141 22 6 chr3 115824059 115825162 -111699416 - THE1C-int LTR MaLR 0 1580 461 1181 118 0 18 chr3 115825167 115825336 -111699242 - THE1C LTR MaLR -209 166 1 213 200 0 0 chr3 115826906 115826946 -111697632 + MIR SINE MIR 71 110 -152 2123 118 7 0 chr3 115827090 115827387 -111697191 - AluSx SINE Alu -10 302 4 1535 181 0 11 chr3 115830626 115830891 -111693687 + AluJb SINE Alu 24 285 -27 198 320 158 20 chr3 115831106 115831309 -111693269 - L2 LINE L2 -455 2859 2629 456 266 158 23 chr3 115831582 115831759 -111692819 - MIR SINE MIR -7 255 55 23 33 0 0 chr3 115832723 115832753 -111691825 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr3 115833501 115833530 -111691048 + AT_rich Low_complexity Low_complexity 1 29 0 1288 108 21 37 chr3 115833671 115833912 -111690666 - L1PA13 LINE L1 -2 6161 5925 682 115 34 0 chr3 115834399 115834610 -111689968 + (TA)n Simple_repeat Simple_repeat 1 218 0 374 109 0 6 chr3 115836964 115837021 -111687557 - L1PA13 LINE L1 -762 5392 5337 498 133 0 0 chr3 115837021 115837101 -111687477 + L1PA16 LINE L1 6069 6151 -15 1967 157 3 0 chr3 115837306 115837600 -111686978 + AluSx SINE Alu 1 295 -17 27 62 0 0 chr3 115837740 115837788 -111686790 + AT_rich Low_complexity Low_complexity 1 48 0 275 286 163 0 chr3 115839248 115839346 -111685232 + MIR SINE MIR 75 188 -74 21 36 0 0 chr3 115840098 115840126 -111684452 + AT_rich Low_complexity Low_complexity 1 28 0 726 272 46 0 chr3 115841491 115841708 -111682870 + L1PA7 LINE L1 6 232 -6631 970 122 27 0 chr3 115841788 115841935 -111682643 + AluJb SINE Alu 146 296 -16 10338 187 29 14 chr3 115841940 115844744 -111679834 + L1PA7 LINE L1 3689 6553 -317 531 0 0 0 chr3 115844744 115844803 -111679775 + (TA)n Simple_repeat Simple_repeat 1 59 0 2195 115 0 0 chr3 115844803 115845117 -111679461 + L1PB1 LINE L1 5837 6150 -1 10338 187 29 14 chr3 115844803 115845038 -111679540 + L1PA7 LINE L1 6553 6783 -87 31 0 0 0 chr3 115845117 115845148 -111679430 + AT_rich Low_complexity Low_complexity 1 31 0 411 197 13 0 chr3 115845153 115845229 -111679349 - FLAM_C SINE Alu -25 108 32 1712 186 43 10 chr3 115845229 115845643 -111678935 - L1 LINE L1 -2781 4007 3580 * 7445 204 20 64 chr3 115845629 115847338 -111677240 - L1 LINE L1 -4519 2270 638 1048 148 11 28 chr3 115847328 115847510 -111677068 + L1MB1 LINE L1 5615 5793 -375 * 692 189 26 33 chr3 115847575 115847728 -111676850 + L1MB1 LINE L1 5778 5929 -239 2337 48 0 38 chr3 115847729 115848043 -111676535 - AluY SINE Alu -9 302 1 287 303 34 0 chr3 115848109 115848198 -111676380 - MIR SINE MIR -21 241 150 640 199 96 7 chr3 115848472 115848618 -111675960 - MIR SINE MIR -103 159 1 21 36 0 0 chr3 115850406 115850434 -111674144 + AT_rich Low_complexity Low_complexity 1 28 0 455 232 51 22 chr3 115850702 115850840 -111673738 + MIR SINE MIR 105 246 -16 298 303 0 22 chr3 115851628 115851717 -111672861 + MIR3 SINE MIR 117 203 -5 196 400 0 0 chr3 115852642 115852712 -111671866 - MIR3 SINE MIR -3 205 136 261 295 62 18 chr3 115853844 115853956 -111670622 - MLT2F LTR ERVL -509 154 38 1439 194 16 28 chr3 115854272 115854591 -111669987 + MLT1B LTR MaLR 69 383 -7 3397 279 62 34 chr3 115854781 115856531 -111668047 - ERVL LTR ERVL -528 5236 3402 412 276 109 35 chr3 115856592 115856766 -111667812 - MLT1J2 LTR MaLR -204 246 60 551 274 50 73 chr3 115856782 115857001 -111667577 - MLT1F1 LTR MaLR -51 516 303 528 229 103 23 chr3 115857064 115857239 -111667339 + MER5A DNA MER1_type 1 189 0 535 111 0 12 chr3 115857917 115857998 -111666580 + MADE1 DNA Mariner 1 80 0 1080 282 101 14 chr3 115858229 115858577 -111666001 - MLT1F1 LTR MaLR -2 565 188 321 311 68 23 chr3 115859199 115859331 -111665247 + L2 LINE L2 3123 3260 -12 2069 209 33 48 chr3 115859389 115859935 -111664643 - L1ME2 LINE L1 -6 6158 5621 291 250 228 11 chr3 115860424 115860516 -111664062 - L2 LINE L2 -1 3312 3201 219 167 0 0 chr3 115860645 115860681 -111663897 + L2 LINE L2 3232 3267 -5 274 243 139 35 chr3 115861323 115861467 -111663111 - L1ME4a LINE L1 -2 6119 5961 252 288 15 0 chr3 115862985 115863051 -111661527 - L2 LINE L2 -5 3267 3201 265 276 11 11 chr3 115863223 115863310 -111661268 - MIR SINE MIR -65 197 111 247 189 29 29 chr3 115863534 115863709 -111660869 + (TATAA)n Simple_repeat Simple_repeat 4 178 0 793 300 162 38 chr3 115863850 115863881 -111660697 + L2 LINE L2 1801 1827 -1487 2318 128 11 22 chr3 115863881 115864249 -111660329 + THE1B LTR MaLR 1 364 0 793 300 162 38 chr3 115864249 115864983 -111659595 + L2 LINE L2 1827 2661 -653 597 282 68 36 chr3 115864998 115865250 -111659328 - L2 LINE L2 -4 3309 3050 * 743 321 90 31 chr3 115865249 115865815 -111658763 + L2 LINE L2 2666 3275 -38 203 206 0 0 chr3 115865914 115865948 -111658630 - L2 LINE L2 -19 3294 3261 30 0 0 0 chr3 115866285 115866315 -111658263 + AT_rich Low_complexity Low_complexity 1 30 0 2641 186 25 11 chr3 115866342 115866873 -111657705 - MER34 LTR ERV1 -4 538 1 262 333 0 0 chr3 115867574 115867658 -111656920 + HAL1 LINE L1 808 891 -1616 1127 268 132 57 chr3 115867710 115868688 -111655890 + HAL1 LINE L1 849 1899 -608 1917 202 133 41 chr3 115869571 115870151 -111654427 + MER92B LTR ERV1 4 636 0 870 242 0 0 chr3 115871849 115872031 -111652547 - MER45 DNA AcHobo -1398 183 2 2160 180 27 27 chr3 115872775 115873213 -111651365 - MER66B LTR ERV1 -48 438 1 2645 240 58 13 chr3 115873307 115874061 -111650517 - L1ME2 LINE L1 -11 6153 5366 614 186 77 49 chr3 115874168 115874476 -111650102 - L1ME2 LINE L1 -1479 4667 4274 416 275 35 28 chr3 115874476 115874618 -111649960 + L3 LINE CR1 1308 1450 -127 374 205 0 48 chr3 115875823 115875863 -111648715 + MER3 DNA MER1_type 12 47 -162 721 160 8 156 chr3 115875863 115876101 -111648477 - MER3 DNA MER1_type 0 209 7 228 365 37 0 chr3 115877126 115877233 -111647345 + MIR SINE MIR 20 130 -132 22 0 0 0 chr3 115877530 115877552 -111647026 + AT_rich Low_complexity Low_complexity 1 22 0 524 333 92 4 chr3 115877761 115878001 -111646577 + MIR SINE MIR 2 262 0 25 51 0 0 chr3 115878001 115878040 -111646538 + AT_rich Low_complexity Low_complexity 1 39 0 193 329 129 0 chr3 115878138 115878223 -111646355 - MIR3 SINE MIR -46 162 67 2241 153 49 53 chr3 115878327 115878869 -111645709 + L1ME2 LINE L1 1198 2253 -4173 1992 158 5 8 chr3 115878869 115879242 -111645336 + L1MA4 LINE L1 5928 6299 -1 2446 183 9 36 chr3 115879249 115879779 -111644799 + L1MA7 LINE L1 5774 6289 -2 588 232 42 26 chr3 115879794 115879984 -111644594 + L1ME2 LINE L1 3510 3702 -2724 2277 226 75 5 chr3 115879985 115880609 -111643969 + L1ME2 LINE L1 5569 6236 -208 603 224 14 14 chr3 115880616 115880763 -111643815 + Ricksha DNA DNA 1 147 -3099 8685 153 28 11 chr3 115880809 115882331 -111642247 + Ricksha DNA DNA 1690 3237 -9 413 281 48 0 chr3 115882419 115882565 -111642013 + L1MA10 LINE L1 6169 6321 -13 1137 53 13 0 chr3 115882794 115882984 -111641594 + L1PA5 LINE L1 5986 6177 0 205 361 132 7 chr3 115884046 115884190 -111640388 - MIR3 SINE MIR -15 193 32 188 208 42 0 chr3 115884245 115884293 -111640285 + L2 LINE L2 3178 3227 -86 215 284 98 29 chr3 115884411 115884513 -111640065 - MIR SINE MIR -34 228 120 389 241 85 43 chr3 115884733 115884874 -111639704 - MIR SINE MIR -113 149 3 762 189 67 33 chr3 115884893 115885073 -111639505 + MER5A DNA MER1_type 4 189 0 960 227 42 42 chr3 115885320 115885580 -111638998 - LTR40a LTR ERVL 0 519 260 446 232 46 33 chr3 115885827 115885978 -111638600 - L1ME LINE L1 -354 5767 5615 241 190 63 13 chr3 115888105 115888184 -111636394 - LTR41 LTR ERVL -586 187 105 569 174 0 26 chr3 115888185 115888300 -111636278 + L1PA15-16 LINE L1 2539 2650 -4199 339 214 29 50 chr3 115890323 115890463 -111634115 + L1MC5 LINE L1 7774 7910 -51 182 231 0 0 chr3 115891060 115891099 -111633479 + L2 LINE L2 3275 3313 0 22 0 0 0 chr3 115892702 115892724 -111631854 + AT_rich Low_complexity Low_complexity 1 22 0 1960 150 0 0 chr3 115893265 115893545 -111631033 + AluSx SINE Alu 1 280 -32 225 94 0 0 chr3 115893548 115893580 -111630998 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 494 338 111 23 chr3 115893933 115894321 -111630257 - L2 LINE L2 -359 2955 2534 282 116 0 0 chr3 115894466 115894509 -111630069 + (TG)n Simple_repeat Simple_repeat 1 43 0 243 286 22 55 chr3 115894951 115895042 -111629536 - MIR SINE MIR -92 116 29 501 286 189 19 chr3 115896330 115896536 -111628042 - MIR SINE MIR -14 248 8 322 314 25 8 chr3 115896648 115896766 -111627812 + MIR SINE MIR 14 133 -129 230 285 54 108 chr3 115896802 115897079 -111627499 + HsTC2 DNA Tc2 1 262 -1636 711 286 121 12 chr3 115897117 115897463 -111627115 + HsTC2 DNA Tc2 507 890 -1008 1888 186 52 93 chr3 115897696 115898214 -111626364 - MLT1D LTR MaLR 0 567 2 925 243 93 104 chr3 115900752 115900781 -111623797 + MER34B LTR ERV1 1 29 -536 1516 234 85 56 chr3 115900781 115901405 -111623173 - LTR48B LTR ERV1 -2 642 1 925 243 93 104 chr3 115901405 115901904 -111622674 + MER34B LTR ERV1 29 555 -10 1958 298 98 2 chr3 115902004 115902636 -111621942 - MER69 DNA AcHobo -1830 696 4 1852 180 50 71 chr3 115902889 115903411 -111621167 + LTR49 LTR ERV1 12 522 -73 299 140 53 0 chr3 115903520 115903577 -111621001 + LTR8A LTR ERV1 1 60 -667 186 43 0 0 chr3 115904272 115904295 -111620283 + (CAAA)n Simple_repeat Simple_repeat 3 25 0 1420 180 26 15 chr3 115904370 115904642 -111619936 - LTR39 LTR ERV1 0 783 509 * 1838 167 59 41 chr3 115904619 115905009 -111619569 - LTR39 LTR ERV1 -386 397 1 304 336 36 21 chr3 115905233 115905373 -111619205 + L3 LINE CR1 854 995 -582 212 318 84 9 chr3 115905378 115905485 -111619093 - L2 LINE L2 0 3272 3158 264 200 0 0 chr3 115905585 115905635 -111618943 + Alu SINE Alu 247 296 -6 248 349 21 26 chr3 115906101 115906274 -111618304 + MIR3 SINE MIR 20 193 -15 515 80 30 10 chr3 115907433 115907533 -111617045 + (TAGA)n Simple_repeat Simple_repeat 1 102 0 329 221 93 23 chr3 115908536 115908622 -111615956 + L2 LINE L2 3221 3312 -1 221 178 22 0 chr3 115908624 115908669 -111615909 + (TGAA)n Simple_repeat Simple_repeat 4 49 0 719 128 32 19 chr3 115910606 115910762 -111613816 - MER53 DNA DNA -9 180 23 1204 257 68 64 chr3 115912522 115913039 -111611539 + LTR40a LTR ERVL 1 519 0 431 273 238 7 chr3 115913303 115913446 -111611132 + MIR SINE MIR 3 178 -84 368 255 0 0 chr3 115915442 115915536 -111609042 - MIR SINE MIR -79 129 36 2713 175 122 60 chr3 115916336 115917114 -111607464 - LTR1B LTR ERV1 0 826 1 1126 239 68 9 chr3 115917635 115917957 -111606621 + MER58B DNA MER1_type 1 341 0 23 68 0 0 chr3 115918040 115918084 -111606494 + AT_rich Low_complexity Low_complexity 1 44 0 2733 212 57 30 chr3 115919072 115919705 -111604873 - MER82 DNA MER2_type -1 652 3 1576 183 3 69 chr3 115921062 115921396 -111603182 + AluJb SINE Alu 1 312 0 2217 126 22 25 chr3 115921630 115921995 -111602583 - THE1B LTR MaLR 0 364 1 2094 157 16 16 chr3 115922317 115922692 -111601886 + THE1C LTR MaLR 1 375 0 265 300 92 50 chr3 115923287 115923407 -111601171 - MIR SINE MIR -68 140 16 219 244 0 0 chr3 115925389 115925430 -111599148 + L2 LINE L2 3156 3196 -76 471 281 92 0 chr3 115925818 115925982 -111598596 + MIR SINE MIR 2 180 -82 492 255 69 43 chr3 115925983 115926171 -111598407 + LTR50 LTR ERVL 1 193 -602 248 336 140 31 chr3 115926247 115926476 -111598102 + LTR50 LTR ERVL 387 640 -155 293 275 12 0 chr3 115926477 115926557 -111598021 + LTR33A LTR ERVL 436 516 -7 320 182 0 0 chr3 115926561 115926616 -111597962 + MIR SINE MIR 187 241 -21 241 197 0 42 chr3 115926821 115926892 -111597686 - MER5C DNA MER1_type -4 320 253 1279 214 7 108 chr3 115927023 115927429 -111597149 - MLT1A1 LTR MaLR 0 365 1 397 215 103 0 chr3 115927447 115927554 -111597024 - MER5C DNA MER1_type -206 118 1 1093 165 5 5 chr3 115927615 115927803 -111596775 + AluJo SINE Alu 119 306 -6 28 48 0 0 chr3 115928647 115928689 -111595889 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr3 115928877 115928909 -111595669 + AT_rich Low_complexity Low_complexity 1 32 0 227 152 0 0 chr3 115929002 115929048 -111595530 - L1MC4 LINE L1 -1339 6703 6658 409 71 0 0 chr3 115929086 115929142 -111595436 - L1P LINE L1 -849 5297 5242 2016 61 42 0 chr3 115929142 115929435 -111595143 + L1PA6 LINE L1 5868 6171 0 3398 78 16 0 chr3 115930722 115931168 -111593410 + MLT2A2 LTR ERVL 1 453 0 205 281 0 0 chr3 115931521 115931578 -111593000 - L2 LINE L2 -302 2970 2914 2460 167 27 9 chr3 115931968 115932406 -111592172 - MER31A LTR ERV1 -39 446 1 49 57 0 19 chr3 115932761 115932782 -111591796 + AT_rich Low_complexity Low_complexity 1 21 -83 5605 35 0 7 chr3 115932782 115933483 -111591095 + L1PA4 LINE L1 5471 6166 0 49 57 0 19 chr3 115933483 115933566 -111591012 + AT_rich Low_complexity Low_complexity 21 104 0 25 31 0 0 chr3 115984375 115984407 -111540171 + AT_rich Low_complexity Low_complexity 1 32 0 495 326 8 23 chr3 115984684 115984886 -111539692 + MIR SINE MIR 1 201 -61 466 262 72 97 chr3 115985634 115985924 -111538654 - L2 LINE L2 -1 3312 3030 440 289 157 70 chr3 115985938 115986067 -111538511 + MLT1H LTR MaLR 39 155 -394 1728 57 0 9 chr3 115986067 115986298 -111538280 + AluY SINE Alu 82 311 0 440 289 157 70 chr3 115986298 115986638 -111537940 + MLT1H LTR MaLR 155 549 0 247 248 113 30 chr3 115986728 115986861 -111537717 - L2 LINE L2 -419 2895 2752 5716 145 27 24 chr3 115987597 115988790 -111535788 - L1MA4A LINE L1 -2 6301 5099 405 315 45 0 chr3 115988830 115988941 -111535637 - L2 LINE L2 -3 3269 3154 279 352 0 8 chr3 115989014 115989139 -111535439 - MLT1L LTR MaLR -14 601 478 186 304 47 79 chr3 115989552 115989766 -111534812 - L2 LINE L2 -199 3073 2867 681 298 19 14 chr3 115990037 115990245 -111534333 + MIR SINE MIR 20 228 -34 1641 240 33 13 chr3 115991069 115991523 -111533055 + MLT1C LTR MaLR 5 467 0 279 250 0 0 chr3 115992697 115992749 -111531829 + tRNA-Thr-ACA tRNA tRNA 17 68 -8 195 356 78 0 chr3 115992973 115993063 -111531515 + MIR SINE MIR 49 145 -117 2646 103 0 0 chr3 115993328 115993678 -111530900 + THE1A LTR MaLR 1 350 -5 10568 108 17 0 chr3 115993680 115995232 -111529346 + THE1A-int LTR MaLR 1 1580 0 2737 90 0 0 chr3 115995232 115995587 -111528991 + THE1A LTR MaLR 1 355 0 559 218 122 13 chr3 115995701 115995857 -111528721 + MIR SINE MIR 64 236 -26 423 253 101 36 chr3 115995902 115996277 -111528301 - L1MC/D LINE L1 -665 5635 5343 231 327 29 0 chr3 115996885 115996930 -111527648 + MIR SINE MIR 156 198 -64 306 0 0 0 chr3 115996930 115996964 -111527614 + (TA)n Simple_repeat Simple_repeat 1 34 0 231 327 29 0 chr3 115996964 115997022 -111527556 + MIR SINE MIR 198 262 0 35 41 0 0 chr3 115998573 115998622 -111525956 + AT_rich Low_complexity Low_complexity 1 49 0 1497 223 22 19 chr3 115998837 115999205 -111525373 + MLT1A2 LTR MaLR 4 372 -2 1686 199 0 17 chr3 115999436 115999733 -111524845 + AluJb SINE Alu 20 311 -1 190 102 0 61 chr3 115999736 115999785 -111524793 + (GAAA)n Simple_repeat Simple_repeat 2 47 0 1606 166 6 72 chr3 115999793 116000112 -111524466 + AluJo SINE Alu 1 298 -14 304 206 18 182 chr3 116000348 116000518 -111524060 + MER69 DNA AcHobo 35 2525 -1 2097 167 36 27 chr3 116000565 116001007 -111523571 - MSTB2 LTR MaLR -7 450 5 759 255 101 46 chr3 116001274 116001600 -111522978 - MER2 DNA MER2_type 0 344 1 643 237 0 19 chr3 116001681 116001836 -111522742 + MER3 DNA MER1_type 2 153 -56 3909 112 5 16 chr3 116001836 116002262 -111522316 + MER41B LTR ERV1 1 419 -216 6113 59 14 13 chr3 116002262 116003040 -111521538 - LTR17 LTR ERV1 -1 779 1 3909 112 5 16 chr3 116003040 116003254 -111521324 + MER41B LTR ERV1 419 634 -1 326 83 0 167 chr3 116003255 116003327 -111521251 + MER3 DNA MER1_type 150 209 0 298 146 0 0 chr3 116003287 116003335 -111521243 - MER3 DNA MER1_type -122 87 40 * 3800 140 27 50 chr3 116004188 116004895 -111519683 + LTR8 LTR ERV1 1 691 0 558 230 82 75 chr3 116005520 116005871 -111518707 + LTR18B LTR ERVL 1 614 0 668 225 25 0 chr3 116005878 116006038 -111518540 + HERVL18 LTR ERVL 2 165 -5882 7209 211 8 8 chr3 116006139 116007562 -111517016 + HERVL18 LTR ERVL 186 1608 -4439 289 180 0 0 chr3 116007560 116007610 -111516968 + HERVL18 LTR ERVL 1332 1381 -4666 * 5320 148 6 1 chr3 116007647 116008491 -111516087 + HERVL18 LTR ERVL 1605 2452 -3595 * 19626 154 22 6 chr3 116008490 116011761 -111512817 + HERVL18 LTR ERVL 2720 6042 -5 536 215 146 84 chr3 116011766 116012101 -111512477 + LTR18A LTR ERVL 1 356 -1 216 0 0 0 chr3 116012463 116012487 -111512091 + (TTTA)n Simple_repeat Simple_repeat 1 24 0 1821 124 33 18 chr3 116012494 116012769 -111511809 - AluSx SINE Alu -33 279 1 404 104 15 0 chr3 116012770 116012837 -111511741 + (CCTG)n Simple_repeat Simple_repeat 2 69 0 263 250 12 0 chr3 116012832 116012916 -111511662 + CT-rich Low_complexity Low_complexity 3 87 0 * 2247 94 0 10 chr3 116013138 116013488 -111511090 + AluY SINE Alu 1 311 0 21 0 0 0 chr3 116013803 116013824 -111510754 + AT_rich Low_complexity Low_complexity 1 21 0 2002 177 62 82 chr3 116013930 116014445 -111510133 - MLT1D LTR MaLR 0 505 1 194 265 161 100 chr3 116015189 116015419 -111509159 + MIR SINE MIR 19 262 0 1335 235 46 4 chr3 116016739 116017020 -111507558 + AluJo SINE Alu 3 295 -17 682 109 17 8 chr3 116017024 116017143 -111507435 + (GAAA)n Simple_repeat Simple_repeat 1 120 0 1574 100 9 0 chr3 116017803 116018013 -111506565 - AluSg/x SINE Alu -16 296 85 245 308 0 0 chr3 116018127 116018192 -111506386 + L2 LINE L2 2214 2278 -1036 502 233 8 114 chr3 116018740 116018976 -111505602 + MER58C DNA MER1_type 1 211 -4 339 286 90 8 chr3 116021519 116021652 -111502926 - L3b LINE CR1 -121 1462 1319 21 0 0 0 chr3 116022784 116022805 -111501773 + AT_rich Low_complexity Low_complexity 1 21 0 1507 132 9 0 chr3 116024522 116024742 -111499836 - AluJb SINE Alu -6 306 85 715 177 16 10 chr3 116024747 116024939 -111499639 + Tigger6 DNA MER2_type 1327 1519 -78 643 123 0 38 chr3 116024976 116025082 -111499496 - U6 snRNA snRNA -4 103 2 1927 192 26 31 chr3 116025314 116025772 -111498806 - L1MA10 LINE L1 -25 6309 5854 187 264 19 0 chr3 116028117 116028170 -111496408 - MIR SINE MIR 0 262 209 348 69 121 0 chr3 116028173 116028231 -111496347 + MLT1A1 LTR MaLR 1 65 -300 * 2906 186 49 24 chr3 116028230 116028985 -111495593 - LTR1B LTR ERV1 -19 806 1 561 180 14 79 chr3 116028985 116029124 -111495454 + MLT1A1 LTR MaLR 64 193 -172 2596 245 64 28 chr3 116029173 116030034 -111494544 + MLT1A2-int LTR MaLR 755 1735 0 1058 179 47 124 chr3 116030040 116030426 -111494152 + MLT1A2 LTR MaLR 15 370 -4 352 248 56 88 chr3 116030452 116030577 -111494001 - MIR SINE MIR -105 157 37 213 186 47 0 chr3 116030623 116030666 -111493912 + (CATCT)n Simple_repeat Simple_repeat 1 45 0 2265 103 3 0 chr3 116030824 116031116 -111493462 + AluSx SINE Alu 5 297 -15 21 71 0 0 chr3 116032110 116032152 -111492426 + AT_rich Low_complexity Low_complexity 1 42 0 447 264 9 9 chr3 116032156 116032266 -111492312 - L2 LINE L2 -5 3308 3199 252 333 26 0 chr3 116032764 116032842 -111491736 + L2 LINE L2 3191 3270 -2 22 25 0 25 chr3 116035119 116035135 -111489443 + AT_rich Low_complexity Low_complexity 1 16 -23 1689 206 0 0 chr3 116035135 116035422 -111489156 + AluJb SINE Alu 1 287 -25 22 25 0 25 chr3 116035422 116035445 -111489133 + AT_rich Low_complexity Low_complexity 16 39 0 11872 128 24 104 chr3 116036195 116037801 -111486777 - Tigger1 DNA MER2_type 0 2418 686 240 35 0 0 chr3 116037801 116037830 -111486748 + (TTA)n Simple_repeat Simple_repeat 2 30 0 11872 128 24 104 chr3 116037830 116038419 -111486159 - Tigger1 DNA MER2_type -1732 686 464 5871 107 43 0 chr3 116038419 116039517 -111485061 - L1PA11 LINE L1 -2 6172 5055 11872 128 24 104 chr3 116039517 116039946 -111484632 - Tigger1 DNA MER2_type -1954 464 2 367 115 0 0 chr3 116040153 116040214 -111484364 + L1PA15 LINE L1 6098 6158 -7 25 75 0 0 chr3 116040260 116040313 -111484265 + AT_rich Low_complexity Low_complexity 1 53 0 22 35 0 0 chr3 116040690 116040719 -111483859 + AT_rich Low_complexity Low_complexity 1 29 0 495 202 9 0 chr3 116040917 116041026 -111483552 + L1M4 LINE L1 18 127 -6415 271 313 112 55 chr3 116041400 116041622 -111482956 + MIR SINE MIR 3 235 -27 1250 226 37 34 chr3 116043446 116043796 -111480782 + MLT2D LTR ERVL 64 414 0 6326 54 3 10 chr3 116045640 116046663 -111477915 - L1PA5 LINE L1 -7 6147 5106 5176 129 24 0 chr3 116046663 116047459 -111477119 + L1PA15 LINE L1 5351 6165 0 21 36 0 0 chr3 116048104 116048132 -111476446 + AT_rich Low_complexity Low_complexity 1 28 0 2115 120 0 7 chr3 116050214 116050513 -111474065 + AluSx SINE Alu 1 297 -15 25 31 0 0 chr3 116050632 116050664 -111473914 + AT_rich Low_complexity Low_complexity 1 32 0 312 261 35 0 chr3 116051400 116051515 -111473063 - L1ME3A LINE L1 -298 5872 5754 229 204 0 0 chr3 116051593 116051637 -111472941 + MLT1H LTR MaLR 494 537 -12 190 81 54 0 chr3 116055702 116055739 -111468839 + (TA)n Simple_repeat Simple_repeat 2 40 0 192 370 30 10 chr3 116056600 116056700 -111467878 + L2 LINE L2 3170 3271 -1 251 245 19 0 chr3 116056748 116056801 -111467777 + Tigger5 DNA MER2_type 1 54 -2269 290 226 0 0 chr3 116056837 116056890 -111467688 + Tigger5 DNA MER2_type 2270 2322 -1 252 0 0 0 chr3 116058372 116058400 -111466178 + (T)n Simple_repeat Simple_repeat 1 28 0 2069 131 0 6 chr3 116058549 116058863 -111465715 - AluSx SINE Alu 0 312 1 263 302 0 5 chr3 116058864 116058929 -111465649 + MIR SINE MIR 46 107 -102 876 166 147 38 chr3 116058931 116059142 -111465436 + MLT1D LTR MaLR 3 236 -269 203 243 0 0 chr3 116059142 116059179 -111465399 + G-rich Low_complexity Low_complexity 4 40 0 1053 267 32 9 chr3 116059179 116059494 -111465084 + MLT1D LTR MaLR 184 505 0 202 209 0 0 chr3 116059615 116059658 -111464920 + (ATG)n Simple_repeat Simple_repeat 3 45 0 27 0 0 0 chr3 116061316 116061343 -111463235 + AT_rich Low_complexity Low_complexity 1 27 0 344 234 66 51 chr3 116061577 116061714 -111462864 - L1ME3A LINE L1 -208 5962 5824 1902 225 81 35 chr3 116061863 116062479 -111462099 - MLT1E2 LTR MaLR 0 626 5 782 231 30 89 chr3 116062908 116063028 -111461550 - MIR SINE MIR -5 257 131 1968 141 10 0 chr3 116063028 116063334 -111461244 + AluSx SINE Alu 1 309 -3 782 231 30 89 chr3 116063334 116063482 -111461096 - MIR SINE MIR -131 131 5 732 196 58 93 chr3 116063557 116063782 -111460796 + MER20 DNA MER1_type 3 219 0 196 355 19 47 chr3 116063961 116064068 -111460510 + L2 LINE L2 2978 3081 -191 196 203 62 78 chr3 116064207 116064271 -111460307 + L2 LINE L2 3210 3272 0 1610 188 60 44 chr3 116064279 116064408 -111460170 - MLT1B LTR MaLR -1 389 264 1915 149 128 10 chr3 116064408 116064791 -111459787 - MSTA LTR MaLR 0 428 1 1610 188 60 44 chr3 116064791 116065044 -111459534 - MLT1B LTR MaLR -126 264 1 454 273 95 25 chr3 116065200 116065442 -111459136 + MER113 DNA MER1_type? 186 444 -77 1565 202 39 15 chr3 116065808 116066140 -111458438 - MER2 DNA MER2_type 0 345 6 953 204 11 6 chr3 116066162 116066343 -111458235 - MER5A DNA MER1_type -7 182 1 219 360 36 0 chr3 116066525 116066636 -111457942 - L2 LINE L2 0 3313 3199 221 309 117 11 chr3 116066683 116066777 -111457801 + MIR SINE MIR 27 130 -78 511 338 46 14 chr3 116067362 116067581 -111456997 + MIR SINE MIR 21 246 -16 200 163 23 0 chr3 116069849 116069892 -111454686 + (CATA)n Simple_repeat Simple_repeat 4 47 0 329 232 54 36 chr3 116069970 116070082 -111454496 + MIR SINE MIR 60 173 -89 246 245 30 5 chr3 116070335 116070422 -111454156 - MIR SINE MIR -62 146 67 23 33 0 0 chr3 116070639 116070669 -111453909 + AT_rich Low_complexity Low_complexity 1 30 0 193 89 44 0 chr3 116071305 116071350 -111453228 + (TA)n Simple_repeat Simple_repeat 1 47 0 2142 98 0 3 chr3 116071350 116071635 -111452943 - AluY SINE Alu -27 284 1 390 251 196 38 chr3 116071640 116071970 -111452608 + L1ME LINE L1 5261 5552 -614 387 209 0 0 chr3 116073687 116073802 -111450776 + (TA)n Simple_repeat Simple_repeat 2 116 0 261 169 0 0 chr3 116074834 116074893 -111449685 + (TA)n Simple_repeat Simple_repeat 1 59 0 366 139 0 0 chr3 116076342 116076414 -111448164 + (TA)n Simple_repeat Simple_repeat 1 72 0 426 369 37 8 chr3 116077082 116077323 -111447255 - ERVL LTR ERVL -4728 1036 789 230 0 33 0 chr3 116077844 116077874 -111446704 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1245 204 37 71 chr3 116077880 116078174 -111446404 - AluJb SINE Alu -24 288 5 185 366 10 30 chr3 116078936 116079037 -111445541 - L2 LINE L2 -207 3106 3008 286 369 108 47 chr3 116079324 116079752 -111444826 - L2 LINE L2 -2180 1134 681 315 337 22 0 chr3 116079888 116079980 -111444598 + MIR SINE MIR 19 112 -150 21 57 0 0 chr3 116080453 116080488 -111444090 + AT_rich Low_complexity Low_complexity 1 35 0 204 40 0 0 chr3 116080533 116080558 -111444020 + (TG)n Simple_repeat Simple_repeat 2 26 0 259 253 51 13 chr3 116081853 116081932 -111442646 - L2 LINE L2 -1 3312 3231 340 306 88 6 chr3 116082386 116082546 -111442032 - L1M4 LINE L1 -2381 3765 3593 540 254 82 37 chr3 116082573 116082975 -111441603 - L1M4 LINE L1 -2635 3511 3092 6577 219 32 8 chr3 116082983 116085726 -111438852 - L1MC1 LINE L1 -63 7065 4258 849 220 45 58 chr3 116085797 116086110 -111438468 - L1M4 LINE L1 -3139 3007 2699 423 234 168 9 chr3 116086258 116086365 -111438213 - FLAM_A SINE Alu -9 124 1 490 295 138 49 chr3 116086544 116086995 -111437583 - L1MC1 LINE L1 -3992 3130 2640 186 219 0 0 chr3 116087554 116087586 -111436992 - MIR SINE MIR -13 249 218 503 201 48 67 chr3 116087687 116087809 -111436769 - L1MC1 LINE L1 -4657 2465 2347 695 207 0 15 chr3 116087809 116087944 -111436634 + FLAM_A SINE Alu 1 133 0 503 201 48 67 chr3 116087944 116088030 -111436548 - L1MC1 LINE L1 -4775 2347 2261 228 67 0 0 chr3 116088429 116088459 -111436119 + (T)n Simple_repeat Simple_repeat 1 30 0 645 347 63 9 chr3 116088514 116088943 -111435635 - L1MC1 LINE L1 -5947 476 25 1716 85 8 8 chr3 116088991 116089227 -111435351 + AluY SINE Alu 75 310 -1 18528 45 15 0 chr3 116089278 116092350 -111432228 + L1PA4 LINE L1 3065 6154 -1 321 258 31 10 chr3 116093171 116093268 -111431310 - L2 LINE L2 -1 3312 3214 516 270 60 35 chr3 116093753 116093953 -111430625 - MER63A DNA MER1_type -2 208 4 458 291 50 28 chr3 116094480 116094662 -111429916 - MER68 LTR ERV1 -127 435 250 1328 210 27 56 chr3 116094662 116095038 -111429540 + MLT1A1 LTR MaLR 1 365 0 1420 165 8 16 chr3 116095038 116095281 -111429297 - MER68 LTR ERV1 -308 254 14 41 0 0 0 chr3 116095656 116095697 -111428881 + AT_rich Low_complexity Low_complexity 1 41 0 1126 301 103 2 chr3 116095701 116096196 -111428382 - L2 LINE L2 -942 2372 1828 11417 213 44 10 chr3 116096199 116098732 -111425846 + L1HS LINE L1 2 2635 -4162 * 11936 196 25 7 chr3 116098723 116101239 -111423339 + L1HS LINE L1 3143 5703 -1094 3574 162 5 27 chr3 116101246 116101450 -111423128 + L1HS LINE L1 6052 6259 -555 340 43 0 0 chr3 116101450 116101496 -111423082 - MADE1 DNA Mariner -34 46 1 3574 162 5 27 chr3 116101496 116102051 -111422527 + L1HS LINE L1 6259 6809 -5 429 266 90 34 chr3 116102234 116102411 -111422167 - L2 LINE L2 -1807 1507 1321 6234 47 0 0 chr3 116102534 116103314 -111421264 - L1P LINE L1 -880 5266 4487 4785 34 19 0 chr3 116103314 116103895 -111420683 + L1P LINE L1 3890 4481 -1665 443 301 42 42 chr3 116104300 116104493 -111420085 - L3 LINE CR1 -470 1107 915 24 85 0 0 chr3 116105467 116105526 -111419052 + AT_rich Low_complexity Low_complexity 1 59 0 25 0 0 0 chr3 116107133 116107158 -111417420 + AT_rich Low_complexity Low_complexity 1 25 0 651 129 97 0 chr3 116107185 116107309 -111417269 - L1P LINE L1 -816 5330 5195 388 326 70 13 chr3 116107424 116107651 -111416927 + L1MCb LINE L1 306 545 -5500 828 272 37 44 chr3 116107780 116107920 -111416658 + L1MCb LINE L1 570 709 -5336 2683 124 11 36 chr3 116107920 116108363 -111416215 + MER57B LTR ERV1 1 432 -2 828 272 37 44 chr3 116108363 116108574 -111416004 + L1MCb LINE L1 709 905 -5140 2124 120 3 0 chr3 116109313 116109612 -111414966 + AluY SINE Alu 1 300 -11 841 216 0 6 chr3 116109618 116109780 -111414798 + FRAM SINE Alu 4 164 -12 223 190 30 20 chr3 116110542 116110642 -111413936 + GA-rich Low_complexity Low_complexity 1 101 0 773 211 0 11 chr3 116110754 116110929 -111413649 + LTR13 LTR ERVK 835 1007 0 1635 51 0 14 chr3 116110965 116111179 -111413399 - AluY SINE Alu -7 304 94 281 262 25 25 chr3 116111211 116111333 -111413245 + CT-rich Low_complexity Low_complexity 1 122 0 201 74 0 0 chr3 116111407 116111434 -111413144 + (C)n Simple_repeat Simple_repeat 1 27 0 206 371 0 28 chr3 116111465 116111643 -111412935 + C-rich Low_complexity Low_complexity 5 177 0 347 285 203 32 chr3 116113780 116114026 -111410552 - L1M2 LINE L1 -614 5552 5356 2078 118 0 3 chr3 116114115 116114402 -111410176 + AluSg SINE Alu 1 286 -24 23 92 0 0 chr3 116114402 116114467 -111410111 + AT_rich Low_complexity Low_complexity 1 65 0 207 0 0 0 chr3 116115455 116115478 -111409100 + (TG)n Simple_repeat Simple_repeat 1 23 0 383 262 70 53 chr3 116118653 116118840 -111405738 + L1M4 LINE L1 5022 5211 -935 338 307 68 58 chr3 116118857 116119062 -111405516 - L1MEc LINE L1 -4803 1507 1301 454 281 109 22 chr3 116119066 116119333 -111405245 - L1MEc LINE L1 -4862 1257 968 22 80 0 0 chr3 116119342 116119392 -111405186 + AT_rich Low_complexity Low_complexity 1 50 0 382 309 64 48 chr3 116119412 116119726 -111404852 - L1MEc LINE L1 -5173 946 628 349 106 0 30 chr3 116120737 116120803 -111403775 + (TA)n Simple_repeat Simple_repeat 2 65 0 17013 93 9 2 chr3 116120909 116124141 -111400437 - L1PA7 LINE L1 -5 6464 3210 432 176 0 0 chr3 116124141 116124215 -111400363 - L1PA7 LINE L1 -4737 1724 1651 985 297 40 13 chr3 116124231 116124703 -111399875 - L1MCa LINE L1 -3549 3015 2531 2014 117 0 21 chr3 116124728 116125009 -111399569 + AluSg SINE Alu 1 275 -35 31 0 0 0 chr3 116125009 116125040 -111399538 + AT_rich Low_complexity Low_complexity 1 31 0 443 239 58 26 chr3 116125162 116125317 -111399261 - L1MCa LINE L1 -4838 1726 1567 1358 239 111 25 chr3 116125327 116126092 -111398486 - L1MCa LINE L1 -4985 1060 697 2671 124 11 36 chr3 116126092 116126535 -111398043 - MER57B LTR ERV1 -2 432 1 1358 239 111 25 chr3 116126535 116126675 -111397903 - L1MCa LINE L1 -5348 697 570 1302 301 43 17 chr3 116126804 116127333 -111397245 - L1MCa LINE L1 -5500 545 3 1552 223 132 42 chr3 116127826 116128328 -111396250 - LTR10B LTR ERV1 0 547 1 302 309 24 8 chr3 116128684 116128807 -111395771 + LTR16A LTR ERVL 301 425 -25 454 297 9 47 chr3 116128901 116129113 -111395465 - L1ME LINE L1 -344 5818 5615 328 250 36 10 chr3 116129272 116129369 -111395209 - MLT1H LTR MaLR -35 514 421 2018 124 4 0 chr3 116129895 116130169 -111394409 - AluSp SINE Alu -38 275 1 21 36 0 0 chr3 116130347 116130375 -111394203 + AT_rich Low_complexity Low_complexity 1 28 0 976 304 82 35 chr3 116130973 116131548 -111393030 + L1MCa LINE L1 50 651 -5775 3157 249 80 77 chr3 116131682 116132961 -111391617 + L1MCa LINE L1 2450 3723 -2703 2147 102 0 0 chr3 116132961 116133271 -111391307 + AluSq SINE Alu 1 310 0 3157 249 80 77 chr3 116133271 116134160 -111390418 + L1MCa LINE L1 3723 4608 -1818 3341 247 42 4 chr3 116134314 116135230 -111389348 - L1M2 LINE L1 -6013 836 5 1515 255 47 41 chr3 116135270 116135761 -111388817 + MLT1D LTR MaLR 3 496 -9 216 0 0 0 chr3 116135793 116135817 -111388761 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 690 282 60 41 chr3 116135834 116136253 -111388325 - L1MCc LINE L1 -5973 450 24 2365 53 0 57 chr3 116136533 116136851 -111387727 + AluY SINE Alu 1 300 -11 620 147 10 0 chr3 116136938 116137040 -111387538 - L1PB4 LINE L1 -5 6151 6049 2492 39 3 23 chr3 116139089 116139397 -111385181 - AluY SINE Alu -8 303 2 5384 195 26 12 chr3 116139574 116141388 -111383190 + L1M1 LINE L1 2580 4420 -3145 2986 179 24 3 chr3 116141497 116142084 -111382494 - L1 LINE L1 -1213 4933 4335 2498 213 22 25 chr3 116142072 116142229 -111382349 - L1P LINE L1 -804 5342 5186 * 507 38 25 13 chr3 116142229 116142308 -111382270 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 2498 213 22 25 chr3 116142308 116142794 -111381784 - L1P LINE L1 -960 5186 4701 2288 95 0 3 chr3 116143306 116143611 -111380967 - AluSc SINE Alu -5 304 1 226 272 39 58 chr3 116143832 116143935 -111380643 - MIR SINE MIR -71 191 91 24 53 0 0 chr3 116144276 116144314 -111380264 + AT_rich Low_complexity Low_complexity 1 38 0 221 379 124 6 chr3 116145105 116145274 -111379304 + MER5A DNA MER1_type 1 189 0 228 237 17 17 chr3 116146084 116146143 -111378435 + (TA)n Simple_repeat Simple_repeat 2 60 0 1511 263 107 28 chr3 116147069 116147537 -111377041 + MLT1D LTR MaLR 1 505 0 546 274 172 0 chr3 116147618 116147804 -111376774 + MIR SINE MIR 31 248 -14 240 100 0 0 chr3 116147866 116147906 -111376672 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 2218 27 4 0 chr3 116147906 116148168 -111376410 - L1PA4 LINE L1 -24 6131 5869 731 246 76 15 chr3 116148915 116149114 -111375464 + L1MA9 LINE L1 5948 6168 -144 309 26 0 0 chr3 116149114 116149152 -111375426 + (CA)n Simple_repeat Simple_repeat 1 38 0 731 246 76 15 chr3 116149152 116149216 -111375362 + L1MA9 LINE L1 6168 6227 -85 24 67 0 0 chr3 116149233 116149278 -111375300 + AT_rich Low_complexity Low_complexity 1 45 0 1510 230 99 44 chr3 116149309 116149782 -111374796 - MLT1D LTR MaLR -6 499 1 189 300 67 0 chr3 116150077 116150137 -111374441 + L2 LINE L2 3235 3298 -15 22 56 0 0 chr3 116150337 116150373 -111374205 + AT_rich Low_complexity Low_complexity 1 36 0 232 344 201 20 chr3 116151324 116151568 -111373010 - L3b LINE CR1 -3 1580 1293 22 42 0 0 chr3 116151952 116151976 -111372602 + AT_rich Low_complexity Low_complexity 1 24 0 1564 229 34 0 chr3 116152175 116152563 -111372015 + L1 LINE L1 2485 2885 -3261 951 231 26 71 chr3 116152561 116153025 -111371553 + L1 LINE L1 2752 3194 -2952 * 230 69 0 0 chr3 116153131 116153160 -111371418 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 319 207 24 24 chr3 116153723 116153805 -111370773 + L1 LINE L1 4121 4202 -1944 331 87 0 0 chr3 116154035 116154109 -111370469 - Alu SINE Alu 0 309 236 21 71 0 0 chr3 116155272 116155314 -111369264 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr3 116155386 116155408 -111369170 + AT_rich Low_complexity Low_complexity 1 22 0 919 58 0 0 chr3 116155627 116155748 -111368830 + L1PA4 LINE L1 6030 6150 -5 21 0 0 0 chr3 116156160 116156181 -111368397 + AT_rich Low_complexity Low_complexity 1 21 0 440 153 65 16 chr3 116156679 116156803 -111367775 + L1PA2 LINE L1 6021 6150 -5 21 0 0 0 chr3 116157214 116157235 -111367343 + AT_rich Low_complexity Low_complexity 1 21 0 292 276 13 13 chr3 116157700 116157776 -111366802 + L2 LINE L2 3185 3260 -12 21 0 0 0 chr3 116158149 116158170 -111366408 + AT_rich Low_complexity Low_complexity 1 21 0 315 299 23 0 chr3 116158478 116158565 -111366013 + L2 LINE L2 3184 3272 0 2966 178 61 30 chr3 116158735 116159520 -111365058 + L1MC2 LINE L1 5121 5925 -419 5695 161 73 25 chr3 116159531 116160130 -111364448 + Tigger3b DNA MER2_type 14 583 -2445 2001 137 0 10 chr3 116160130 116160436 -111364142 + AluSc SINE Alu 1 303 -6 5695 161 73 25 chr3 116160436 116160989 -111363589 + Tigger3b DNA MER2_type 583 1221 -10 1852 175 28 42 chr3 116160989 116161423 -111363155 + L1MC2 LINE L1 5908 6335 -9 329 338 39 13 chr3 116161700 116161854 -111362724 + L1M4 LINE L1 3687 3844 -2302 603 304 24 43 chr3 116162795 116163124 -111361454 - L1ME3A LINE L1 -282 5888 5566 1600 212 55 34 chr3 116165340 116165722 -111358856 - MSTD LTR MaLR -6 390 1 5211 264 93 27 chr3 116165726 116167165 -111357413 - MSTD-int LTR MaLR -4 1731 174 2730 16 0 3 chr3 116167165 116167475 -111357103 - AluY SINE Alu -2 309 1 5211 264 93 27 chr3 116167475 116167633 -111356945 - MSTD-int LTR MaLR -1561 174 28 1343 257 34 29 chr3 116167651 116168039 -111356539 - MSTD LTR MaLR 0 467 1 1041 217 29 69 chr3 116168043 116168421 -111356157 - MSTD LTR MaLR 0 365 3 237 139 0 0 chr3 116168988 116169031 -111355547 + (TTTTG)n Simple_repeat Simple_repeat 3 45 0 8994 209 81 32 chr3 116169313 116172559 -111352019 + L1M4c LINE L1 4 3410 -2972 616 218 230 57 chr3 116172559 116172617 -111351961 - MSTD LTR MaLR -3 393 346 2280 115 0 0 chr3 116172617 116172929 -111351649 + AluSx SINE Alu 1 312 0 616 218 230 57 chr3 116172929 116173205 -111351373 - MSTD LTR MaLR -50 346 1 4251 153 8 23 chr3 116173212 116173962 -111350616 - Tigger1 DNA MER2_type 0 2418 1680 6725 180 28 12 chr3 116173983 116177807 -111346771 - L1MA3 LINE L1 0 7724 2893 2078 216 42 36 chr3 116177823 116177997 -111346581 + L1M3 LINE L1 5004 5176 -1007 644 38 0 0 chr3 116177997 116178077 -111346501 - L1PA11 LINE L1 0 6174 6095 2078 216 42 36 chr3 116178077 116178687 -111345891 + L1M3 LINE L1 5176 5764 -419 2214 183 78 19 chr3 116178861 116179366 -111345212 + LTR26B LTR ERV1 1 521 -10 1838 236 21 7 chr3 116179621 116180041 -111344537 - MSTB LTR MaLR 0 426 1 247 305 53 0 chr3 116182166 116182297 -111342281 + L1ME4a LINE L1 5807 5944 -177 1699 172 10 32 chr3 116182433 116182747 -111341831 + AluJb SINE Alu 1 307 -5 224 266 101 13 chr3 116182816 116182913 -111341665 + MIR SINE MIR 84 146 -62 242 294 84 25 chr3 116182933 116183052 -111341526 + MIR SINE MIR 110 235 -27 1070 269 114 17 chr3 116183084 116183445 -111341133 + MSTD LTR MaLR 1 396 0 204 360 90 10 chr3 116183648 116183748 -111340830 - L2 LINE L2 -9 3304 3197 826 284 65 9 chr3 116183966 116184195 -111340383 - MER21B LTR ERV1 -606 257 16 1955 249 29 31 chr3 116184211 116184826 -111339752 - L1MA9 LINE L1 -55 6257 5644 2590 234 14 30 chr3 116184827 116184905 -111339673 - Tigger7 DNA MER2_type -2 2585 2507 266 0 0 29 chr3 116184905 116184940 -111339638 + (TA)n Simple_repeat Simple_repeat 1 34 0 2590 234 14 30 chr3 116184940 116185563 -111339015 - Tigger7 DNA MER2_type -80 2507 3 1693 190 50 14 chr3 116185564 116185970 -111338608 - L1MA9 LINE L1 -665 5647 5227 636 197 26 77 chr3 116185970 116186204 -111338374 - L1MA9 LINE L1 -875 5271 5050 34 42 0 0 chr3 116186204 116186252 -111338326 + AT_rich Low_complexity Low_complexity 1 48 0 647 267 0 0 chr3 116187100 116187231 -111337347 + Tigger3b DNA MER2_type 1 131 -1100 3435 174 34 32 chr3 116187248 116187475 -111337103 - MER50 LTR ERV1 -20 714 489 2266 95 0 0 chr3 116187475 116187781 -111336797 - AluY SINE Alu 0 311 6 3435 174 34 32 chr3 116187781 116188266 -111336312 - MER50 LTR ERV1 -245 489 1 * 5510 145 65 36 chr3 116188266 116188561 -111336017 + Tigger3b DNA MER2_type 124 408 -2620 2278 67 0 0 chr3 116188561 116188900 -111335678 + AluY SINE Alu 1 339 0 5510 145 65 36 chr3 116188900 116189678 -111334900 + Tigger3b DNA MER2_type 408 1230 -1 21 0 0 0 chr3 116189754 116189775 -111334803 + AT_rich Low_complexity Low_complexity 1 21 0 401 310 82 60 chr3 116189778 116190094 -111334484 + HAL1b LINE L1 119 441 -907 2319 82 0 0 chr3 116190319 116190622 -111333956 + AluY SINE Alu 1 303 -8 39 68 0 0 chr3 116191405 116191479 -111333099 + AT_rich Low_complexity Low_complexity 1 74 0 1495 192 151 3 chr3 116191758 116192102 -111332476 + MSTD LTR MaLR 2 396 0 202 192 19 19 chr3 116193209 116193261 -111331317 + (TAA)n Simple_repeat Simple_repeat 2 53 0 202 273 36 0 chr3 116193521 116193576 -111331002 + MIR SINE MIR 201 257 -5 43 54 0 21 chr3 116194666 116194732 -111329846 + AT_rich Low_complexity Low_complexity 1 66 -25 1047 147 0 0 chr3 116194732 116194895 -111329683 - U1 snRNA snRNA 0 165 3 43 54 0 21 chr3 116194895 116194921 -111329657 + AT_rich Low_complexity Low_complexity 66 91 0 181 213 82 16 chr3 116195245 116195306 -111329272 + L2 LINE L2 2510 2574 -740 844 300 18 25 chr3 116195651 116195934 -111328644 + MLT2E LTR ERVL 10 290 -338 3125 146 135 9 chr3 116196192 116196739 -111327839 + MER51A LTR ERV1 1 616 -18 264 184 20 0 chr3 116196766 116196815 -111327763 + MLT2E LTR ERVL 577 626 -2 338 333 33 13 chr3 116197000 116197153 -111327425 + L2 LINE L2 3158 3313 0 2180 122 0 6 chr3 116197756 116198068 -111326510 + AluY SINE Alu 1 310 -1 626 230 0 22 chr3 116198375 116198510 -111326068 + FLAM_A SINE Alu 1 132 -1 226 229 48 124 chr3 116198620 116198725 -111325853 + MER91C DNA MER1_type 13 109 -31 238 234 0 16 chr3 116198959 116199023 -111325555 - LTR33A LTR ERVL -17 506 444 394 257 50 55 chr3 116200809 116200993 -111323585 + MIR SINE MIR 38 222 -40 278 252 44 13 chr3 116201019 116201178 -111323400 + (TA)n Simple_repeat Simple_repeat 1 164 0 181 387 0 0 chr3 116201179 116201254 -111323324 + L2 LINE L2 3234 3308 -5 242 197 33 0 chr3 116201307 116201368 -111323210 + (TA)n Simple_repeat Simple_repeat 1 63 0 201 39 0 0 chr3 116201384 116201410 -111323168 + (TG)n Simple_repeat Simple_repeat 2 27 0 22 0 0 0 chr3 116201733 116201755 -111322823 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr3 116201827 116201869 -111322709 + AT_rich Low_complexity Low_complexity 1 42 0 2464 244 35 23 chr3 116201938 116202672 -111321906 - L1ME2 LINE L1 -68 6096 5354 360 301 14 32 chr3 116202704 116202885 -111321693 - L1ME3 LINE L1 -333 5829 5657 338 213 85 73 chr3 116203657 116203821 -111320757 - L1ME2 LINE L1 -2948 3198 3033 24 53 0 0 chr3 116203887 116203925 -111320653 + AT_rich Low_complexity Low_complexity 1 38 0 23 33 0 0 chr3 116204381 116204411 -111320167 + AT_rich Low_complexity Low_complexity 1 30 0 2022 202 73 53 chr3 116204411 116204492 -111320086 - L1MB1 LINE L1 -1 6167 6089 728 202 8 0 chr3 116204492 116204621 -111319957 + FLAM_A SINE Alu 2 131 -2 2022 202 73 53 chr3 116204621 116205048 -111319530 - L1MB1 LINE L1 -79 6089 5649 2368 66 0 31 chr3 116205392 116205710 -111318868 - AluY SINE Alu -3 308 1 198 103 0 0 chr3 116205973 116206002 -111318576 + (TG)n Simple_repeat Simple_repeat 2 30 0 348 43 0 0 chr3 116206010 116206056 -111318522 + (GA)n Simple_repeat Simple_repeat 2 47 0 298 160 40 0 chr3 116206056 116206106 -111318472 - AluS SINE Alu -29 271 220 314 311 22 76 chr3 116206126 116206351 -111318227 - L1MC/D LINE L1 -2004 5804 5592 363 358 67 14 chr3 116206360 116206645 -111317933 - L1MC/D LINE L1 -559 5603 5304 579 270 44 13 chr3 116207041 116207242 -111317336 + MLT1H LTR MaLR 38 264 -291 1790 116 67 0 chr3 116207455 116207740 -111316838 - L1PA12 LINE L1 0 6168 5865 226 202 9 61 chr3 116208706 116208820 -111315758 + A-rich Low_complexity Low_complexity 1 108 0 387 237 0 0 chr3 116209023 116209099 -111315479 + MER3 DNA MER1_type 1 76 -133 785 11 0 0 chr3 116209099 116209189 -111315389 - L1P3 LINE L1 -585 5569 5480 333 109 0 0 chr3 116209342 116209397 -111315181 + (TA)n Simple_repeat Simple_repeat 2 56 0 658 179 0 0 chr3 116209397 116209503 -111315075 + Tigger3(Golem) DNA MER2_type 2923 3028 -1 448 240 7 48 chr3 116209559 116209705 -111314873 + MER3 DNA MER1_type 66 205 -4 1312 164 42 42 chr3 116210291 116210577 -111314001 + MER50 LTR ERV1 1 286 -448 1543 196 161 13 chr3 116210577 116210950 -111313628 + MSTA LTR MaLR 1 428 0 8779 160 15 42 chr3 116210952 116212574 -111312004 + MSTA-int LTR MaLR 3 1580 0 1877 168 122 13 chr3 116212574 116212960 -111311618 + MSTA LTR MaLR 1 428 0 2241 206 23 5 chr3 116212960 116213393 -111311185 + MER50 LTR ERV1 282 722 -12 300 268 42 103 chr3 116213489 116213631 -111310947 + L1MCc LINE L1 1139 1253 -5170 450 0 0 0 chr3 116213631 116213681 -111310897 + (TA)n Simple_repeat Simple_repeat 1 50 0 300 268 42 103 chr3 116213681 116213848 -111310730 + L1MCc LINE L1 1253 1429 -4994 1256 146 3 156 chr3 116215711 116215853 -111308725 + AluJo SINE Alu 12 74 -243 2075 122 3 3 chr3 116215853 116216157 -111308421 + AluSc SINE Alu 1 304 -5 1256 146 3 156 chr3 116216157 116216369 -111308209 + AluJo SINE Alu 74 317 0 25 51 0 0 chr3 116217996 116218035 -111306543 + AT_rich Low_complexity Low_complexity 1 39 0 1530 66 0 0 chr3 116219753 116219951 -111304627 + L1PA4 LINE L1 5951 6148 -7 1522 200 0 18 chr3 116220414 116220699 -111303879 + AluJb SINE Alu 7 286 -26 193 348 90 34 chr3 116220810 116220899 -111303679 - L3b LINE CR1 -33 1550 1457 4837 154 29 0 chr3 116220929 116221755 -111302823 - L1PA16 LINE L1 -9 6157 5308 24 32 0 0 chr3 116221758 116221789 -111302789 + AT_rich Low_complexity Low_complexity 1 31 0 6705 148 21 4 chr3 116221789 116223722 -111300856 - L1MA1 LINE L1 -4 6298 4335 3997 239 14 8 chr3 116223722 116223867 -111300711 - L1 LINE L1 -815 5331 5188 507 38 25 13 chr3 116223867 116223946 -111300632 + (TAGA)n Simple_repeat Simple_repeat 2 81 0 3997 239 14 8 chr3 116223946 116224907 -111299671 - L1 LINE L1 -958 5188 4219 433 243 39 0 chr3 116225792 116225895 -111298683 - LTR40b LTR ERVL -7 455 349 445 281 14 23 chr3 116226003 116226220 -111298358 - L1MEc LINE L1 -4146 2250 2036 1258 117 0 36 chr3 116226221 116226417 -111298161 - THE1C LTR MaLR -186 189 1 1052 87 58 6 chr3 116226417 116226590 -111297988 - THE1C-int LTR MaLR 0 1580 1399 911 99 0 0 chr3 116226640 116226761 -111297817 + THE1C LTR MaLR 1 121 -254 286 57 0 0 chr3 116226752 116226787 -111297791 + THE1B LTR MaLR 330 364 0 * 648 144 0 0 chr3 116226798 116226895 -111297683 + THE1-int LTR MaLR 1142 1238 -342 2281 227 40 10 chr3 116226930 116227450 -111297128 - MER68 LTR ERV1 -24 538 3 2454 282 60 37 chr3 116227453 116228792 -111295786 + L1M4 LINE L1 2883 4253 -1893 1326 284 60 47 chr3 116228775 116229412 -111295166 + L1MC4 LINE L1 6359 7003 -1039 * 935 270 65 61 chr3 116229406 116229946 -111294632 + L1M4 LINE L1 4704 5245 -901 * 223 229 0 0 chr3 116229952 116229987 -111294591 + (TATG)n Simple_repeat Simple_repeat 3 40 -10 2153 175 23 14 chr3 116229987 116230416 -111294162 + Tigger2a DNA MER2_type 2 434 0 223 229 0 0 chr3 116230416 116230428 -111294150 + (TATG)n Simple_repeat Simple_repeat 39 50 0 243 0 0 0 chr3 116230431 116230458 -111294120 + (CA)n Simple_repeat Simple_repeat 2 28 0 823 173 0 0 chr3 116230511 116230638 -111293940 + FLAM_C SINE Alu 1 127 -6 531 287 169 33 chr3 116231434 116231706 -111292872 - L2 LINE L2 0 3313 3005 266 216 81 0 chr3 116231847 116231921 -111292657 - MER20 DNA MER1_type 0 219 140 1000 135 11 3 chr3 116231921 116232188 -111292390 + MER1B DNA MER1_type 1 337 -2 491 228 35 48 chr3 116232188 116232320 -111292258 - MER20 DNA MER1_type -66 153 24 714 314 171 55 chr3 116232378 116233081 -111291497 - L2 LINE L2 -437 2877 2094 454 200 0 0 chr3 116233455 116233530 -111291048 + MER1B DNA MER1_type 1 75 -262 * 946 155 61 28 chr3 116233525 116233706 -111290872 + MER1B DNA MER1_type 151 337 -2 25 31 0 0 chr3 116233744 116233776 -111290802 + AT_rich Low_complexity Low_complexity 1 32 0 388 282 37 37 chr3 116234061 116234224 -111290354 + MLT1A1 LTR MaLR 1 163 -202 394 171 28 107 chr3 116234335 116234430 -111290148 + MLT1A1 LTR MaLR 230 372 -56 5306 152 6 0 chr3 116234450 116234617 -111289961 - L1PA16 LINE L1 -2 6164 5999 1706 153 194 6 chr3 116234617 116234977 -111289601 - MSTA LTR MaLR 0 428 1 5306 152 6 0 chr3 116234977 116236091 -111288487 - L1PA16 LINE L1 -167 5999 4879 2084 143 0 0 chr3 116236092 116236392 -111288186 - AluSg SINE Alu -10 300 1 227 128 0 0 chr3 116236519 116236558 -111288020 + MLT1A1 LTR MaLR 369 407 -21 42 65 0 0 chr3 116237435 116237512 -111287066 + AT_rich Low_complexity Low_complexity 1 77 0 4615 164 47 65 chr3 116238021 116239079 -111285499 - L1MA4 LINE L1 0 6300 5262 31 44 0 0 chr3 116239080 116239125 -111285453 + AT_rich Low_complexity Low_complexity 1 45 0 4143 132 58 70 chr3 116239142 116239945 -111284633 + LTR25 LTR ERV1 1 794 0 1192 119 29 14 chr3 116239963 116240173 -111284405 - L1MA2 LINE L1 -23 6281 6069 326 211 154 39 chr3 116241180 116241284 -111283294 - MLT1H LTR MaLR -304 245 130 395 164 36 21 chr3 116242864 116243004 -111281574 + (TATG)n Simple_repeat Simple_repeat 3 144 0 538 282 80 115 chr3 116243581 116244277 -111280301 - L2 LINE L2 0 3313 2636 300 248 120 84 chr3 116244283 116244533 -111280045 - LTR41 LTR ERVL -6 767 509 511 285 50 34 chr3 116244832 116245011 -111279567 - LTR41 LTR ERVL -585 188 7 777 323 105 22 chr3 116245020 116245515 -111279063 - L2 LINE L2 -681 2633 2098 287 313 90 30 chr3 116245534 116245668 -111278910 - L2 LINE L2 -2032 1282 1141 23 33 0 0 chr3 116246199 116246229 -111278349 + AT_rich Low_complexity Low_complexity 1 30 0 1425 146 16 5 chr3 116246406 116246776 -111277802 + L1MA5 LINE L1 5869 6293 -7 381 90 81 0 chr3 116246971 116247082 -111277496 + (TA)n Simple_repeat Simple_repeat 1 120 0 224 316 0 26 chr3 116247082 116247158 -111277420 + L2 LINE L2 1705 1778 -1536 707 276 80 4 chr3 116247367 116247592 -111276986 - MLT1H LTR MaLR -307 242 1 4241 45 0 0 chr3 116247888 116248419 -111276159 - L1PA3 LINE L1 -3654 2492 1962 * 22936 34 1 0 chr3 116248413 116252117 -111272461 + L1PA3 LINE L1 2467 6172 0 363 257 86 57 chr3 116252118 116252258 -111272320 + L2 LINE L2 3167 3310 -3 187 292 97 53 chr3 116252426 116252539 -111272039 + L2 LINE L2 2261 2378 -936 252 0 0 0 chr3 116253238 116253266 -111271312 + (A)n Simple_repeat Simple_repeat 1 28 0 202 273 34 68 chr3 116253766 116253854 -111270724 - MIR SINE MIR -158 104 20 251 191 0 32 chr3 116256181 116256244 -111268334 + T-rich Low_complexity Low_complexity 3 63 0 4257 290 44 14 chr3 116256355 116257706 -111266872 + L1MA4A LINE L1 777 1981 -4868 5979 176 20 27 chr3 116257707 116258413 -111266165 + L1MA4A LINE L1 4728 5438 -1567 2284 66 0 11 chr3 116258413 116258726 -111265852 - AluY SINE Alu 0 310 1 5979 176 20 27 chr3 116258726 116258893 -111265685 + L1MA4A LINE L1 5438 5605 -1400 2054 127 0 3 chr3 116258893 116259177 -111265401 + AluSx SINE Alu 5 287 -25 242 29 29 0 chr3 116259180 116259215 -111265363 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 5979 176 20 27 chr3 116259215 116259927 -111264651 + L1MA4A LINE L1 5607 6291 -714 1780 86 127 0 chr3 116259927 116260194 -111264384 - AluSx SINE Alu -10 302 2 5979 176 20 27 chr3 116260194 116260898 -111263680 + L1MA4A LINE L1 6291 6999 -6 870 276 54 8 chr3 116261324 116261685 -111262893 - MER89 LTR ERV1 -81 478 1 1067 209 10 0 chr3 116261688 116261884 -111262694 - MER89-int LTR ERV1 -2 6799 6602 * 2691 263 59 20 chr3 116261882 116262855 -111261723 - MER89-int LTR ERV1 -3233 3568 2546 492 268 7 7 chr3 116263064 116263206 -111261372 - MER89-int LTR ERV1 -4982 1819 1678 1134 150 0 0 chr3 116263410 116263590 -111260988 + AluSg/x SINE Alu 129 308 -4 1638 241 65 64 chr3 116263590 116264187 -111260391 - MER89-int LTR ERV1 -5290 1511 914 1245 234 69 36 chr3 116264187 116264550 -111260028 + MSTD LTR MaLR 8 382 -14 1329 279 87 76 chr3 116264789 116265502 -111259076 - MER89-int LTR ERV1 -6080 721 1 1178 212 75 51 chr3 116265502 116265734 -111258844 - MER89 LTR ERV1 0 559 334 1525 225 36 25 chr3 116265734 116266094 -111258484 - MLT1A1 LTR MaLR 0 365 2 1178 212 75 51 chr3 116266094 116266310 -111258268 - MER89 LTR ERV1 -225 334 1 26 0 0 0 chr3 116266634 116266660 -111257918 + AT_rich Low_complexity Low_complexity 1 26 0 201 328 31 0 chr3 116266976 116267040 -111257538 + L2 LINE L2 3207 3272 0 21 0 0 0 chr3 116267130 116267151 -111257427 + AT_rich Low_complexity Low_complexity 1 21 0 285 272 11 5 chr3 116267176 116267300 -111257278 + A-rich Low_complexity Low_complexity 1 124 0 25 51 0 0 chr3 116267997 116268036 -111256542 + AT_rich Low_complexity Low_complexity 1 39 0 1321 186 85 30 chr3 116268113 116268408 -111256170 + AluJb SINE Alu 1 311 -1 2080 117 7 0 chr3 116268411 116268702 -111255876 - AluSc SINE Alu -16 293 1 21 36 0 0 chr3 116268770 116268798 -111255780 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 116271451 116271472 -111253106 + AT_rich Low_complexity Low_complexity 1 21 0 202 204 0 0 chr3 116273007 116273026 -111251552 + (TAAA)n Simple_repeat Simple_repeat 4 22 -25 1974 109 44 10 chr3 116273026 116273320 -111251258 + AluSx SINE Alu 1 304 -8 202 204 0 0 chr3 116273320 116273344 -111251234 + (TAAA)n Simple_repeat Simple_repeat 21 47 0 337 310 115 32 chr3 116273506 116273977 -111250601 - L1MC5 LINE L1 -105 7856 7347 490 257 24 52 chr3 116274546 116274780 -111249798 - L1MC5 LINE L1 -1039 6956 6695 329 220 184 80 chr3 116274780 116274896 -111249682 - Charlie2 DNA MER1_type -174 2688 2585 2302 82 0 0 chr3 116274896 116275189 -111249389 - AluY SINE Alu -18 293 1 329 220 184 80 chr3 116275189 116275485 -111249093 - Charlie2 DNA MER1_type -277 2585 2233 555 268 59 48 chr3 116275543 116275815 -111248763 - Charlie2 DNA MER1_type -2587 275 1 211 385 15 15 chr3 116278405 116278535 -111246043 + MIR SINE MIR 21 150 -112 310 398 50 14 chr3 116278717 116278996 -111245582 - L2 LINE L2 -1 3312 3024 2268 130 25 0 chr3 116279329 116279684 -111244894 - THE1B LTR MaLR 0 364 1 297 359 35 5 chr3 116279921 116280119 -111244459 - L1MC5 LINE L1 -2027 5781 5578 183 222 0 0 chr3 116280126 116280171 -111244407 + (TATG)n Simple_repeat Simple_repeat 2 46 0 1698 96 4 0 chr3 116280396 116280626 -111243952 - AluSp SINE Alu -1 312 82 21 71 0 0 chr3 116280694 116280736 -111243842 + AT_rich Low_complexity Low_complexity 1 42 0 21 36 0 0 chr3 116282297 116282325 -111242253 + AT_rich Low_complexity Low_complexity 1 28 0 372 325 35 41 chr3 116282325 116282494 -111242084 - MIR SINE MIR -78 184 17 1656 155 7 24 chr3 116283712 116284002 -111240576 - AluJo SINE Alu -25 287 3 13602 151 28 6 chr3 116284314 116286680 -111237898 - Tigger1 DNA MER2_type 0 2418 1 228 379 21 0 chr3 116287151 116287246 -111237332 + MIR SINE MIR 55 151 -57 21 36 0 0 chr3 116287374 116287402 -111237176 + AT_rich Low_complexity Low_complexity 1 28 0 34 24 0 0 chr3 116288154 116288195 -111236383 + AT_rich Low_complexity Low_complexity 1 41 0 538 298 129 34 chr3 116289994 116291109 -111233469 + L1ME LINE L1 4095 5315 -831 337 241 37 10 chr3 116291723 116291819 -111232759 + MLT1H LTR MaLR 421 513 -36 228 248 191 9 chr3 116291870 116291975 -111232603 - MER94 DNA DNA 0 134 11 470 297 9 47 chr3 116291979 116292191 -111232387 + L1ME LINE L1 5615 5818 -344 307 309 24 8 chr3 116292285 116292408 -111232170 - LTR16A LTR ERVL -25 425 301 1525 223 132 42 chr3 116292764 116293266 -111231312 + LTR10B LTR ERV1 1 547 0 1321 301 43 17 chr3 116293759 116294288 -111230290 + L1MCb LINE L1 3 545 -5500 1381 240 95 26 chr3 116294417 116294557 -111230021 + L1MCb LINE L1 570 699 -5817 2733 124 11 23 chr3 116294557 116294994 -111229584 + MER57B LTR ERV1 1 432 -2 1381 240 95 26 chr3 116294994 116295760 -111228818 + L1MCb LINE L1 699 1531 -4985 452 237 58 32 chr3 116295770 116295926 -111228652 + L1MCb LINE L1 1567 1726 -4838 31 0 0 0 chr3 116296048 116296079 -111228499 + AT_rich Low_complexity Low_complexity 1 31 0 1994 114 0 21 chr3 116296079 116296360 -111228218 - AluSg SINE Alu -35 275 1 1037 297 40 13 chr3 116296385 116296857 -111227721 + L1MCb LINE L1 2531 3015 -3549 431 184 0 0 chr3 116296871 116296947 -111227631 + L1PA7 LINE L1 1649 1724 -4737 17039 93 11 0 chr3 116296947 116300179 -111224399 + L1PA7 LINE L1 3210 6464 -5 292 129 0 32 chr3 116300285 116300347 -111224231 + (TA)n Simple_repeat Simple_repeat 2 61 0 388 309 64 48 chr3 116301358 116301672 -111222906 + L1MEd LINE L1 628 946 -5173 22 80 0 0 chr3 116301692 116301742 -111222836 + AT_rich Low_complexity Low_complexity 1 50 0 475 281 109 22 chr3 116301751 116302018 -111222560 + L1MEd LINE L1 968 1257 -4862 342 307 68 58 chr3 116302022 116302227 -111222351 + L1MEd LINE L1 1301 1507 -4803 384 262 70 53 chr3 116302244 116302431 -111222147 - L1M4 LINE L1 -935 5211 5022 207 0 0 0 chr3 116305602 116305625 -111218953 + (CA)n Simple_repeat Simple_repeat 1 23 0 23 92 0 0 chr3 116306612 116306677 -111217901 + AT_rich Low_complexity Low_complexity 1 65 0 2012 115 3 3 chr3 116306677 116306963 -111217615 - AluSg SINE Alu -24 286 1 2000 184 32 3 chr3 116310584 116310958 -111213620 + MLT1B LTR MaLR 3 387 -3 23 54 0 0 chr3 116311469 116311506 -111213072 + AT_rich Low_complexity Low_complexity 1 37 0 347 320 88 5 chr3 116311519 116311713 -111212865 - MIR SINE MIR -1 261 52 212 59 29 0 chr3 116312401 116312435 -111212143 + (TG)n Simple_repeat Simple_repeat 1 35 0 1640 188 73 19 chr3 116314043 116314415 -111210163 + L1ME2 LINE L1 5520 5911 -253 193 398 76 0 chr3 116314573 116314691 -111209887 + MIR SINE MIR 5 131 -131 2561 147 56 2 chr3 116314735 116315163 -111209415 + LTR9B LTR ERV1 5 455 -189 1526 195 66 86 chr3 116315163 116315722 -111208856 + LTR10A LTR ERV1 1 548 -61 1140 129 21 0 chr3 116315736 116315922 -111208656 + LTR9B LTR ERV1 455 644 0 26 0 0 0 chr3 116316046 116316072 -111208506 + AT_rich Low_complexity Low_complexity 1 26 0 316 329 13 45 chr3 116317734 116317889 -111206689 + MIR SINE MIR 111 260 -2 1315 235 41 61 chr3 116318157 116318572 -111206006 + MER39 LTR ERV1 166 707 0 563 194 56 31 chr3 116320097 116320257 -111204321 - MER53 DNA DNA -2 187 24 2327 176 27 29 chr3 116320265 116320309 -111204269 - L1MA9 LINE L1 0 6312 6269 1888 163 39 6 chr3 116320309 116320646 -111203932 - MER7A DNA MER2_type 0 346 1 2327 176 27 29 chr3 116320646 116321004 -111203574 - L1MA9 LINE L1 -43 6269 5909 1820 162 40 30 chr3 116321004 116321375 -111203203 - THE1C LTR MaLR 0 375 1 2327 176 27 29 chr3 116321375 116321483 -111203095 - L1MA9 LINE L1 -403 5909 5802 1725 171 30 3 chr3 116321485 116321819 -111202759 + L1M2 LINE L1 5344 5686 -626 1621 336 130 23 chr3 116321975 116323619 -111200959 - L2 LINE L2 -18 3295 1456 310 229 157 21 chr3 116323692 116323832 -111200746 + L1ME4a LINE L1 5782 5940 -181 21 0 0 0 chr3 116324392 116324413 -111200165 + AT_rich Low_complexity Low_complexity 1 21 0 202 389 46 69 chr3 116324759 116324890 -111199688 + L2 LINE L2 3136 3263 -9 5285 143 48 30 chr3 116325797 116327148 -111197430 - L1MA8 LINE L1 -30 6261 4885 3773 162 39 4 chr3 116327148 116327869 -111196709 + L1PA13 LINE L1 5417 6163 0 27 49 0 0 chr3 116327883 116327924 -111196654 + AT_rich Low_complexity Low_complexity 1 41 0 365 353 0 8 chr3 116329220 116329339 -111195239 - L2 LINE L2 -4 3309 3192 310 221 70 23 chr3 116329589 116329675 -111194903 + L1MCa LINE L1 159 248 -6316 1466 266 55 31 chr3 116329682 116330228 -111194350 + L1MCa LINE L1 111 669 -5376 1635 223 8 27 chr3 116330228 116330604 -111193974 - MLT1B LTR MaLR 0 390 22 596 323 135 31 chr3 116330605 116331315 -111193263 - L1M4 LINE L1 -1783 4363 3580 1898 189 26 0 chr3 116332758 116333102 -111191476 + L1PA13 LINE L1 1 353 -6434 1088 149 0 0 chr3 116333168 116333349 -111191229 - L1 LINE L1 -1399 4747 4567 24 77 0 0 chr3 116333392 116333444 -111191134 + AT_rich Low_complexity Low_complexity 1 52 0 238 278 28 28 chr3 116333540 116333612 -111190966 - L2 LINE L2 0 3272 3201 402 250 48 81 chr3 116334327 116334451 -111190127 + MIR SINE MIR 20 139 -123 215 229 0 0 chr3 116334900 116334948 -111189630 + CT-rich Low_complexity Low_complexity 1 48 0 212 122 24 0 chr3 116335506 116335547 -111189031 + GA-rich Low_complexity Low_complexity 4 45 0 414 0 0 0 chr3 116336055 116336101 -111188477 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 2057 132 22 38 chr3 116336848 116337218 -111187360 - THE1B LTR MaLR 0 364 1 26 64 0 0 chr3 116338226 116338273 -111186305 + AT_rich Low_complexity Low_complexity 1 47 0 272 292 42 42 chr3 116338853 116338973 -111185605 - MER5B DNA MER1_type 0 178 59 1288 224 68 10 chr3 116339810 116340104 -111184474 + MER58B DNA MER1_type 31 341 0 777 222 25 0 chr3 116340113 116340275 -111184303 + MER3 DNA MER1_type 2 167 -42 234 326 49 7 chr3 116340373 116340557 -111184021 + MIR SINE MIR 38 262 0 189 358 37 28 chr3 116340598 116340707 -111183871 - L2 LINE L2 -8 3305 3196 205 285 100 3 chr3 116341098 116341182 -111183396 - MIR SINE MIR -69 139 47 870 217 0 0 chr3 116342111 116342268 -111182310 + FRAM SINE Alu 2 158 -8 810 236 75 14 chr3 116342642 116342854 -111181724 + MER69 DNA AcHobo 20 244 -982 10257 58 0 4 chr3 116342901 116344218 -111180360 + L1P LINE L1 3920 5231 -915 1709 60 0 0 chr3 116344247 116344464 -111180114 - L1PA6 LINE L1 0 6154 5938 550 254 47 17 chr3 116345158 116345394 -111179184 - L1MEc LINE L1 -5162 1234 992 236 339 9 17 chr3 116345395 116345510 -111179068 - L1MEc LINE L1 -6172 224 111 21 0 0 0 chr3 116346244 116346265 -111178313 + AT_rich Low_complexity Low_complexity 1 21 0 376 331 26 71 chr3 116346795 116347103 -111177475 + L1M4 LINE L1 3906 4199 -1947 235 276 17 69 chr3 116347293 116347409 -111177169 + MER5A DNA MER1_type 17 126 -63 1802 146 20 100 chr3 116347421 116347470 -111177108 - L1MA8 LINE L1 -4 6287 6236 1647 193 3 3 chr3 116347470 116347770 -111176808 - AluJb SINE Alu -12 300 1 1802 146 20 100 chr3 116347770 116348173 -111176405 - L1MA8 LINE L1 -55 6236 5874 27 96 0 0 chr3 116348486 116348569 -111176009 + AT_rich Low_complexity Low_complexity 1 83 0 189 0 0 0 chr3 116348575 116348596 -111175982 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 213 39 0 0 chr3 116348595 116348621 -111175957 + (TA)n Simple_repeat Simple_repeat 1 26 0 333 136 0 0 chr3 116348996 116349062 -111175516 + (TTTTA)n Simple_repeat Simple_repeat 2 67 0 1033 250 104 41 chr3 116349577 116349691 -111174887 + L1M4 LINE L1 2670 2775 -3371 2327 64 0 0 chr3 116349691 116350016 -111174562 + AluY SINE Alu 1 325 0 1033 250 104 41 chr3 116350016 116350556 -111174022 + L1M4 LINE L1 2775 3366 -2780 257 279 119 116 chr3 116350650 116350901 -111173677 - L2 LINE L2 -14 3258 3007 1030 208 35 9 chr3 116350956 116351182 -111173396 + MLT2B3 LTR ERVL 1 232 -322 421 240 90 0 chr3 116351475 116351575 -111173003 + MER5A DNA MER1_type 4 112 -77 27 0 0 0 chr3 116351970 116351997 -111172581 + AT_rich Low_complexity Low_complexity 1 27 0 26 30 0 0 chr3 116352969 116353002 -111171576 + AT_rich Low_complexity Low_complexity 1 33 0 22 0 0 0 chr3 116353893 116353915 -111170663 + AT_rich Low_complexity Low_complexity 1 22 0 2374 97 0 0 chr3 116354094 116354404 -111170174 - AluSg SINE Alu 0 310 1 378 0 0 0 chr3 116356221 116356263 -111168315 + (TA)n Simple_repeat Simple_repeat 2 43 0 24 0 0 0 chr3 116356646 116356670 -111167908 + AT_rich Low_complexity Low_complexity 1 24 0 832 224 4 22 chr3 116357136 116357364 -111167214 + L1M4 LINE L1 4978 5201 -945 2265 169 21 46 chr3 116357372 116357851 -111166727 - L1MA8 LINE L1 -291 6000 5534 864 157 48 0 chr3 116357854 116358020 -111166558 + L1MA7 LINE L1 6073 6246 -45 393 268 80 80 chr3 116358040 116358092 -111166486 + L1M4 LINE L1 5188 5239 -907 3290 83 13 28 chr3 116358092 116358474 -111166104 + MLT2A2 LTR ERVL 1 376 -77 2173 118 3 0 chr3 116358474 116358763 -111165815 + AluSg SINE Alu 1 290 -20 3290 83 13 28 chr3 116358763 116358840 -111165738 + MLT2A2 LTR ERVL 376 453 0 11362 107 2 2 chr3 116358843 116360419 -111164159 + THE1B-int LTR MaLR 5 1580 0 2242 124 30 25 chr3 116360419 116360781 -111163797 + THE1B LTR MaLR 1 364 0 393 268 80 80 chr3 116360781 116360936 -111163642 + L1M4 LINE L1 5239 5400 -746 313 299 51 23 chr3 116361313 116361490 -111163088 + L1ME3A LINE L1 1575 1756 -4640 730 157 10 23 chr3 116361490 116361507 -111163071 + GA-rich Low_complexity Low_complexity 1 17 -415 368 300 15 8 chr3 116361507 116361637 -111162941 + FLAM_A SINE Alu 2 132 -1 730 157 10 23 chr3 116361637 116361928 -111162650 + GA-rich Low_complexity Low_complexity 17 432 0 1150 256 105 73 chr3 116362135 116363445 -111161133 + L1ME3A LINE L1 4631 5987 -252 2631 84 12 0 chr3 116363449 116363794 -111160784 + THE1A LTR MaLR 5 353 -2 11179 111 4 11 chr3 116363794 116365368 -111159210 + THE1A-int LTR MaLR 18 1580 0 2421 89 43 20 chr3 116365368 116365715 -111158863 + THE1A LTR MaLR 1 355 0 531 295 48 5 chr3 116365715 116365922 -111158656 + L1ME3A LINE L1 5983 6198 -41 760 244 0 0 chr3 116366089 116366269 -111158309 - L1MA3 LINE L1 -292 6013 5834 1064 207 85 83 chr3 116366790 116367212 -111157366 + MER66A LTR ERV1 169 478 0 1638 220 51 28 chr3 116367358 116367445 -111157133 - Charlie1b DNA MER1_type -2239 522 439 2187 174 49 2 chr3 116367445 116367854 -111156724 - MSTA LTR MaLR 0 428 1 1638 220 51 28 chr3 116367854 116368275 -111156303 - Charlie1b DNA MER1_type -2322 439 2 378 0 0 0 chr3 116369014 116369056 -111155522 + (TA)n Simple_repeat Simple_repeat 2 43 0 1553 193 30 13 chr3 116369907 116370212 -111154366 + AluJb SINE Alu 2 311 -1 1824 162 106 23 chr3 116370221 116370616 -111153962 + MSTA LTR MaLR 1 428 0 8763 158 5 59 chr3 116370618 116370967 -111153611 + MSTA-int LTR MaLR 3 369 -1211 1484 129 27 0 chr3 116370967 116371191 -111153387 + MER30 DNA MER1_type 1 230 0 8763 158 5 59 chr3 116371191 116372509 -111152069 + MSTA-int LTR MaLR 369 1580 0 2132 154 86 10 chr3 116372509 116372905 -111151673 + MSTA LTR MaLR 1 426 -2 1320 135 204 91 chr3 116373160 116373523 -111151055 - MER4A LTR ERV1 0 664 261 574 162 0 10 chr3 116373523 116373622 -111150956 - MER4A LTR ERV1 -566 98 1 438 275 116 32 chr3 116375520 116375709 -111148869 + MIR SINE MIR 15 219 -43 333 68 0 0 chr3 116376462 116376506 -111148072 + (TG)n Simple_repeat Simple_repeat 1 44 0 451 378 48 21 chr3 116376571 116376791 -111147787 + L2 LINE L2 974 1207 -2107 994 280 30 57 chr3 116376791 116377262 -111147316 + LTR16B LTR ERVL 3 460 -4 451 378 48 21 chr3 116377262 116377372 -111147206 + L2 LINE L2 1207 1313 -2001 34545 111 14 16 chr3 116377392 116383093 -111141485 + L1P2 LINE L1 11 5688 -466 322 130 0 0 chr3 116383206 116383280 -111141298 - Alu SINE Alu 0 311 238 187 318 59 12 chr3 116384454 116384539 -111140039 + L2 LINE L2 3221 3309 -4 24 53 0 0 chr3 116385497 116385535 -111139043 + AT_rich Low_complexity Low_complexity 1 38 0 7061 12 0 4 chr3 116385679 116386496 -111138082 + L1PA2 LINE L1 5340 6153 -2 22 88 0 0 chr3 116387305 116387362 -111137216 + AT_rich Low_complexity Low_complexity 1 57 0 460 337 39 38 chr3 116388128 116388486 -111136092 + L2 LINE L2 2772 3135 -178 416 244 41 8 chr3 116388603 116388726 -111135852 - MER104 DNA Tc2 -18 162 36 274 152 38 190 chr3 116388750 116388839 -111135739 + L2 LINE L2 3165 3221 -92 2408 65 3 0 chr3 116388839 116389133 -111135445 - AluY SINE Alu -13 298 4 274 152 38 190 chr3 116389133 116389201 -111135377 + L2 LINE L2 3221 3298 -15 2351 95 3 0 chr3 116389330 116389636 -111134942 - AluSx SINE Alu -5 307 1 239 232 0 18 chr3 116389714 116389770 -111134808 + (TG)n Simple_repeat Simple_repeat 2 56 0 21 0 0 0 chr3 116389789 116389810 -111134768 + AT_rich Low_complexity Low_complexity 1 21 0 521 294 82 60 chr3 116389887 116390156 -111134422 - MLT1J LTR MaLR -148 363 89 240 265 29 0 chr3 116391455 116391523 -111133055 - MLT1J LTR MaLR 0 511 442 705 271 62 14 chr3 116391587 116391797 -111132781 + MIR SINE MIR 19 238 -24 250 222 84 62 chr3 116391813 116391969 -111132609 - MLT1H LTR MaLR 0 595 378 420 256 141 26 chr3 116392116 116392272 -111132306 - MLT1H LTR MaLR -374 175 2 1640 225 50 54 chr3 116392429 116392914 -111131664 + MLT1D LTR MaLR 1 483 -22 510 293 0 0 chr3 116392910 116393026 -111131552 - MLT1J LTR MaLR -323 188 73 * 336 308 63 21 chr3 116394024 116394167 -111130411 - MIR SINE MIR -106 156 8 2842 191 54 7 chr3 116394359 116394967 -111129611 - L1MB7 LINE L1 -8 6176 5540 1050 201 21 92 chr3 116394963 116395246 -111129332 + MLT1C-int LTR MaLR 1103 1365 -6 * 1471 232 68 34 chr3 116395251 116395695 -111128883 + MLT1C LTR MaLR 1 459 -8 296 128 21 0 chr3 116395989 116396036 -111128542 + A-rich Low_complexity Low_complexity 5 52 0 477 175 35 14 chr3 116396043 116396186 -111128392 + GA-rich Low_complexity Low_complexity 3 148 0 818 242 48 42 chr3 116396839 116397149 -111127429 - LTR40b LTR ERVL -1 461 150 1575 285 80 14 chr3 116397171 116397686 -111126892 - HERVL40 LTR ERVL -526 5004 4456 183 100 0 0 chr3 116402010 116402040 -111122538 + (GA)n Simple_repeat Simple_repeat 1 30 0 464 241 131 103 chr3 116402594 116403091 -111121487 + MLT1J LTR MaLR 1 511 0 182 411 9 9 chr3 116404241 116404348 -111120230 - MER5A DNA MER1_type -18 171 65 276 30 0 0 chr3 116404351 116404384 -111120194 + (TG)n Simple_repeat Simple_repeat 2 34 0 * 408 20 0 0 chr3 116404383 116404432 -111120146 + (TA)n Simple_repeat Simple_repeat 2 50 0 1079 278 74 60 chr3 116404612 116405058 -111119520 - LTR40b LTR ERVL -10 452 1 21 36 0 0 chr3 116405064 116405092 -111119486 + AT_rich Low_complexity Low_complexity 1 28 0 236 292 0 0 chr3 116405643 116405708 -111118870 + LTR43 LTR ERV1 238 302 -300 313 266 24 16 chr3 116405720 116405844 -111118734 - LTR43 LTR ERV1 -324 278 154 1034 304 62 47 chr3 116406034 116406678 -111117900 - MER66-int LTR ERV1 -52 6624 5971 1695 101 8 0 chr3 116407801 116408038 -111116540 + AluSp SINE Alu 73 311 -2 1561 193 48 7 chr3 116408067 116408185 -111116393 + AluJb SINE Alu 6 118 -194 263 28 28 0 chr3 116408185 116408221 -111116357 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 1561 193 48 7 chr3 116408221 116408397 -111116181 + AluJb SINE Alu 118 312 0 1292 322 74 51 chr3 116408488 116408917 -111115661 - MER66-int LTR ERV1 -1508 6248 5831 2278 82 0 0 chr3 116408917 116409210 -111115368 - AluY SINE Alu -18 293 1 1292 322 74 51 chr3 116409210 116410356 -111114222 - MER66-int LTR ERV1 -1925 5831 4636 1042 317 80 69 chr3 116410424 116412053 -111112525 - MER66-int LTR ERV1 -3386 4370 2518 904 336 32 39 chr3 116412389 116413086 -111111492 - MER66-int LTR ERV1 -4021 2655 1964 275 344 65 37 chr3 116413399 116413614 -111110964 - MER66-int LTR ERV1 -5240 1965 1745 224 153 51 51 chr3 116414426 116414485 -111110093 + GA-rich Low_complexity Low_complexity 5 63 0 279 208 91 0 chr3 116414869 116414946 -111109632 - LTR43 LTR ERV1 -291 311 228 6547 76 54 27 chr3 116415360 116416343 -111108235 - L1PA8 LINE L1 -11 6161 5175 1156 248 56 9 chr3 116416843 116417292 -111107286 - MLT1D LTR MaLR -4 501 1 27 73 0 0 chr3 116418073 116418128 -111106450 + AT_rich Low_complexity Low_complexity 1 55 0 2163 281 51 18 chr3 116418153 116419056 -111105522 + L1MEc LINE L1 347 1312 -5409 1176 259 92 35 chr3 116419069 116419833 -111104745 + L1MEc LINE L1 1355 2161 -4560 2449 234 37 24 chr3 116419854 116420300 -111104278 + L1MEc LINE L1 2421 2889 -3651 1945 208 9 25 chr3 116420300 116420737 -111103841 + Tigger2a DNA MER2_type 1 430 -4 2449 234 37 24 chr3 116420737 116421134 -111103444 + L1MEc LINE L1 2889 3279 -3261 951 231 26 71 chr3 116421132 116421596 -111102982 + L1MEc LINE L1 3146 3588 -2952 * 249 83 0 0 chr3 116421703 116421739 -111102839 + (TTTTTG)n Simple_repeat Simple_repeat 2 37 0 1072 275 96 23 chr3 116421740 116422488 -111102090 - L1MCc LINE L1 -4758 2183 1215 885 308 25 31 chr3 116422499 116422820 -111101758 - L1MCc LINE L1 -5306 1117 799 1256 275 78 23 chr3 116423174 116423650 -111100928 - L1MCc LINE L1 -5905 518 17 291 329 42 42 chr3 116424436 116424579 -111099999 - L2 LINE L2 -9 3263 3121 1109 164 86 23 chr3 116425044 116425264 -111099314 - MER46A DNA MER2_type -1 235 2 508 211 18 0 chr3 116425400 116425509 -111099069 + AluJb SINE Alu 201 311 -1 615 117 0 0 chr3 116425512 116425606 -111098972 + (GGAA)n Simple_repeat Simple_repeat 3 96 0 186 229 0 0 chr3 116425644 116425679 -111098899 - L2 LINE L2 -218 3054 3020 364 409 30 4 chr3 116425740 116425977 -111098601 - L2 LINE L2 -372 2942 2700 30 0 0 0 chr3 116426488 116426518 -111098060 + AT_rich Low_complexity Low_complexity 1 30 0 4657 34 19 0 chr3 116426518 116427084 -111097494 - L1PA5 LINE L1 -7 6147 5571 1425 56 0 0 chr3 116427084 116427263 -111097315 + L1PA5 LINE L1 5384 5562 -592 21 0 0 0 chr3 116427358 116427379 -111097199 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 116427988 116428011 -111096567 + AT_rich Low_complexity Low_complexity 1 23 0 688 333 18 0 chr3 116428017 116428239 -111096339 + LTR16B LTR ERVL 1 226 -238 21 0 0 0 chr3 116429091 116429112 -111095466 + AT_rich Low_complexity Low_complexity 1 21 0 182 255 59 0 chr3 116429207 116429258 -111095320 - MIR SINE MIR -131 131 78 336 307 10 0 chr3 116429264 116429365 -111095213 + MIR SINE MIR 141 242 -20 27 0 0 0 chr3 116429598 116429625 -111094953 + AT_rich Low_complexity Low_complexity 1 27 0 29 0 0 0 chr3 116429662 116429691 -111094887 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr3 116429726 116429755 -111094823 + AT_rich Low_complexity Low_complexity 1 29 0 1389 220 0 16 chr3 116429998 116430312 -111094266 + AluJb SINE Alu 1 309 -3 28 79 0 0 chr3 116430407 116430470 -111094108 + AT_rich Low_complexity Low_complexity 1 63 0 4967 144 2 11 chr3 116430616 116430806 -111093772 - L1PA15 LINE L1 -6 6159 5969 1938 140 0 13 chr3 116430806 116431136 -111093442 - AluSq SINE Alu 0 313 1 4967 144 2 11 chr3 116431136 116431739 -111092839 - L1PA15 LINE L1 -196 5969 5373 4476 199 52 9 chr3 116431744 116432777 -111091801 + L1PA15 LINE L1 4318 5395 -751 246 318 11 0 chr3 116433752 116433840 -111090738 + MIR3 SINE MIR 114 202 -6 183 346 140 0 chr3 116433956 116434063 -111090515 + MIR SINE MIR 53 174 -88 534 170 36 36 chr3 116434655 116434767 -111089811 + FLAM_A SINE Alu 22 133 -9 226 139 23 0 chr3 116434806 116434849 -111089729 - L1MC/D LINE L1 -1894 5914 5871 * 917 239 15 15 chr3 116434843 116435115 -111089463 - L1MD3 LINE L1 -10 7985 7714 * 2660 268 123 25 chr3 116435107 116435172 -111089406 - L1MC4 LINE L1 -947 7095 7038 1954 168 113 10 chr3 116435172 116435560 -111089018 + MSTA LTR MaLR 1 428 0 2660 268 123 25 chr3 116435560 116436709 -111087869 - L1MC4 LINE L1 -1004 7038 5762 225 0 0 0 chr3 116436790 116436815 -111087763 + (CA)n Simple_repeat Simple_repeat 2 26 0 281 217 0 33 chr3 116436825 116436917 -111087661 + L1MC4 LINE L1 6615 6703 -1339 198 167 0 0 chr3 116436919 116436955 -111087623 + (TA)n Simple_repeat Simple_repeat 2 37 0 233 217 0 72 chr3 116436975 116437044 -111087534 + LTR66 LTR ERVL 381 444 -166 189 0 0 0 chr3 116437044 116437065 -111087513 + (TA)n Simple_repeat Simple_repeat 2 22 0 1945 146 3 0 chr3 116437074 116437368 -111087210 - AluSx SINE Alu -17 295 1 520 223 31 0 chr3 116437382 116437512 -111087066 - L1MC4 LINE L1 -827 5319 5186 1064 208 41 9 chr3 116438612 116438833 -111085745 - MER46A DNA MER2_type 0 236 9 23 33 0 0 chr3 116439062 116439092 -111085486 + AT_rich Low_complexity Low_complexity 1 30 0 2257 188 27 2 chr3 116439196 116439610 -111084968 + MSTB LTR MaLR 3 426 0 503 349 78 62 chr3 116439807 116440257 -111084321 + MLT1K LTR MaLR 13 469 -119 2181 67 28 0 chr3 116440565 116440848 -111083730 - AluY SINE Alu -20 291 1 360 239 0 0 chr3 116441102 116441190 -111083388 - L1MC4 LINE L1 -1339 6703 6616 183 190 0 0 chr3 116441230 116441288 -111083290 + (TA)n Simple_repeat Simple_repeat 2 59 0 465 320 20 0 chr3 116442417 116442564 -111082014 + LTR16A LTR ERVL 202 351 -99 288 326 32 32 chr3 116442594 116442689 -111081889 - LTR16A LTR ERVL -263 187 93 494 302 87 21 chr3 116443051 116443293 -111081285 - MIR SINE MIR -2 260 3 255 329 13 0 chr3 116443642 116443721 -111080857 - MER81 DNA DNA -34 80 1 664 47 0 0 chr3 116444237 116444322 -111080256 - L1PA5 LINE L1 -1 6153 6069 436 20 0 0 chr3 116444322 116444373 -111080205 + L1PA5 LINE L1 6017 6067 -87 23 54 0 0 chr3 116444975 116445012 -111079566 + AT_rich Low_complexity Low_complexity 1 37 0 1124 249 14 127 chr3 116445371 116445869 -111078709 + MLT1D-int LTR MaLR 446 887 -484 1114 252 26 88 chr3 116445979 116446399 -111078179 + MLT1D-int LTR MaLR 959 1352 -19 * 5531 169 17 23 chr3 116446395 116446695 -111077883 - L1MA4A LINE L1 -5 7000 6700 324 48 0 0 chr3 116446695 116446737 -111077841 + (CA)n Simple_repeat Simple_repeat 2 43 0 5531 169 17 23 chr3 116446737 116447921 -111076657 - L1MA4A LINE L1 -305 6700 5512 5964 153 24 20 chr3 116447940 116448942 -111075636 - L1MA2 LINE L1 0 7723 6698 2767 10 0 3 chr3 116448942 116449253 -111075325 - AluYa5 SINE Alu -1 310 1 5964 153 24 20 chr3 116449253 116449554 -111075024 - L1MA2 LINE L1 -1025 6698 6400 1326 204 65 53 chr3 116449558 116449956 -111074622 - L1MB8 LINE L1 -41 6137 5735 * 10941 190 33 37 chr3 116449954 116451555 -111073023 - L1MA2 LINE L1 -1153 6412 4806 621 106 0 0 chr3 116451555 116451668 -111072910 + (TA)n Simple_repeat Simple_repeat 1 113 0 10941 190 33 37 chr3 116451668 116453903 -111070675 - L1MA2 LINE L1 -2759 4806 2588 9227 202 106 13 chr3 116453901 116454214 -111070364 - L1MA2 LINE L1 -5412 2153 1871 * 468 0 0 0 chr3 116454214 116454266 -111070312 + (TC)n Simple_repeat Simple_repeat 1 52 0 9227 202 106 13 chr3 116454266 116455905 -111068673 - L1MA2 LINE L1 -5694 1871 19 5465 183 31 121 chr3 116455906 116457635 -111066943 - L1MA4A LINE L1 -1320 5528 3955 1965 169 65 46 chr3 116457641 116458056 -111066522 + MSTA LTR MaLR 1 423 -5 1287 217 52 3 chr3 116458061 116458444 -111066134 - L1MA4A LINE L1 -2895 3953 3552 927 198 39 69 chr3 116458535 116461722 -111062856 - L1MA4A LINE L1 -3685 3163 5 1662 254 43 41 chr3 116461762 116462255 -111062323 + MLT1D LTR MaLR 3 496 -9 216 0 0 0 chr3 116462287 116462311 -111062267 + (TTTTTG)n Simple_repeat Simple_repeat 1 24 0 713 282 60 41 chr3 116462328 116462747 -111061831 - L1MCc LINE L1 -5973 450 24 2324 53 0 57 chr3 116463027 116463345 -111061233 + AluY SINE Alu 1 300 -11 620 147 10 0 chr3 116463432 116463534 -111061044 - L1PB4 LINE L1 -5 6151 6049 245 274 153 0 chr3 116465239 116465363 -111059215 + MIR SINE MIR 120 262 0 2495 39 0 23 chr3 116465584 116465893 -111058685 - AluY SINE Alu -8 303 2 721 33 0 0 chr3 116466066 116466156 -111058422 + L1M1 LINE L1 2576 2665 -4900 261 57 0 0 chr3 116467152 116467187 -111057391 + (TG)n Simple_repeat Simple_repeat 1 35 0 254 310 159 28 chr3 116467304 116467449 -111057129 - MIR3 SINE MIR -40 168 5 303 368 39 13 chr3 116468270 116468425 -111056153 - MIR SINE MIR -96 166 8 216 0 0 0 chr3 116468426 116468450 -111056128 + (TG)n Simple_repeat Simple_repeat 2 25 0 17216 188 43 15 chr3 116469556 116477044 -111047534 + L1MA2 LINE L1 16 7720 -3 2250 95 10 0 chr3 116477177 116477483 -111047095 - AluSg SINE Alu -1 309 1 228 211 0 39 chr3 116477897 116477949 -111046629 + T-rich Low_complexity Low_complexity 2 51 0 2259 27 0 0 chr3 116478699 116479002 -111045576 + L1PA4 LINE L1 5869 6171 0 546 274 172 0 chr3 116479064 116479250 -111045328 - MIR SINE MIR -14 248 31 1511 263 107 28 chr3 116479331 116479799 -111044779 - MLT1D LTR MaLR 0 505 1 228 237 17 17 chr3 116480725 116480784 -111043794 + (TA)n Simple_repeat Simple_repeat 1 59 0 229 379 124 6 chr3 116481595 116481764 -111042814 - MER5A DNA MER1_type 0 189 1 24 53 0 0 chr3 116482556 116482594 -111041984 + AT_rich Low_complexity Low_complexity 1 38 0 231 272 39 58 chr3 116482935 116483038 -111041540 + MIR SINE MIR 91 191 -71 2253 95 0 3 chr3 116483259 116483564 -111041014 + AluSc SINE Alu 1 304 -5 244 271 0 0 chr3 116484201 116484260 -111040318 + GA-rich Low_complexity Low_complexity 2 60 0 1458 269 71 22 chr3 116485892 116486387 -111038191 + LTR40a LTR ERVL 1 519 0 2493 61 0 0 chr3 116486816 116487127 -111037451 - AluY SINE Alu 0 311 1 225 321 24 0 chr3 116488519 116488603 -111035975 - MLT1J LTR MaLR -317 194 109 16246 31 1 0 chr3 116488654 116490636 -111033942 - L1P LINE L1 -2340 3806 1823 2829 29 0 0 chr3 116490629 116490969 -111033609 - L1PA3 LINE L1 -520 5635 5296 * 4269 30 2 0 chr3 116490969 116491512 -111033066 + L1PA3 LINE L1 5635 6180 0 357 188 12 0 chr3 116491825 116491905 -111032673 - L1MA9 LINE L1 0 6312 6232 1168 166 98 68 chr3 116491905 116492126 -111032452 + L1MA9 LINE L1 5948 6184 -128 324 48 0 0 chr3 116492126 116492168 -111032410 + (CA)n Simple_repeat Simple_repeat 1 42 0 1168 166 98 68 chr3 116492168 116492271 -111032307 + L1MA9 LINE L1 6184 6282 -30 1693 218 93 46 chr3 116492318 116492800 -111031778 - MLT1D LTR MaLR 0 505 1 189 300 67 0 chr3 116493095 116493155 -111031423 + L2 LINE L2 3235 3298 -15 22 56 0 0 chr3 116493357 116493393 -111031185 + AT_rich Low_complexity Low_complexity 1 36 0 219 342 206 21 chr3 116494344 116494587 -111029991 - L3b LINE CR1 -3 1580 1293 37 0 0 0 chr3 116494979 116495016 -111029562 + AT_rich Low_complexity Low_complexity 1 37 0 1547 135 127 0 chr3 116495167 116495512 -111029066 + AluSx SINE Alu 5 381 0 564 294 15 0 chr3 116495565 116495701 -111028877 + LTR67 LTR ERVL 36 173 -384 181 129 0 32 chr3 116496528 116496559 -111028019 + L2 LINE L2 3228 3257 -15 361 309 68 61 chr3 116496840 116497118 -111027460 - MLT1I LTR MaLR -50 359 80 198 0 0 0 chr3 116498043 116498065 -111026513 + (A)n Simple_repeat Simple_repeat 1 22 0 392 278 32 24 chr3 116498385 116498511 -111026067 + L2 LINE L2 3186 3312 -1 22 35 0 0 chr3 116498544 116498573 -111026005 + AT_rich Low_complexity Low_complexity 1 29 0 1975 118 0 10 chr3 116499298 116499586 -111024992 + AluSg SINE Alu 1 285 -25 1948 62 0 19 chr3 116499592 116499850 -111024728 + L1PA6 LINE L1 5901 6153 -1 392 245 216 0 chr3 116499900 116500039 -111024539 - LTR41 LTR ERVL -196 577 409 1293 187 37 77 chr3 116500072 116500398 -111024180 + MLT1A1 LTR MaLR 1 313 -52 28 71 0 0 chr3 116501118 116501174 -111023404 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr3 116501242 116501264 -111023314 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 116501310 116501331 -111023247 + AT_rich Low_complexity Low_complexity 1 21 0 1506 168 9 58 chr3 116503620 116503948 -111020630 - L1MC1 LINE L1 -41 6292 5981 343 104 15 30 chr3 116504235 116504302 -111020276 + (GAAAA)n Simple_repeat Simple_repeat 5 70 0 21 36 0 0 chr3 116505074 116505102 -111019476 + AT_rich Low_complexity Low_complexity 1 28 0 531 269 160 0 chr3 116507123 116507279 -111017299 + MER5A DNA MER1_type 9 189 0 11188 161 46 11 chr3 116507541 116509089 -111015489 - Tigger4(Zombi) DNA MER2_type 0 2731 1087 716 181 0 23 chr3 116509089 116509222 -111015356 + FLAM_C SINE Alu 1 130 -3 11188 161 46 11 chr3 116509222 116509786 -111014792 - Tigger4(Zombi) DNA MER2_type -1644 1087 544 300 53 0 0 chr3 116509910 116509948 -111014630 + (TG)n Simple_repeat Simple_repeat 2 39 0 243 369 101 13 chr3 116510271 116510420 -111014158 - L2 LINE L2 -543 2771 2610 12492 196 42 11 chr3 116510520 116511619 -111012959 + Tigger4(Zombi) DNA MER2_type 1 1064 -1667 716 181 0 23 chr3 116511619 116511752 -111012826 - FLAM_C SINE Alu -3 130 1 12492 196 42 11 chr3 116511752 116513298 -111011280 + Tigger4(Zombi) DNA MER2_type 1064 2729 -2 27 0 0 0 chr3 116514128 116514155 -111010423 + GC_rich Low_complexity Low_complexity 1 27 0 1199 218 26 48 chr3 116564986 116565318 -110959260 - MLT1C LTR MaLR -36 354 4 24 77 0 0 chr3 116565571 116565623 -110958955 + AT_rich Low_complexity Low_complexity 1 52 0 710 316 13 8 chr3 116565724 116565958 -110958620 - MIR SINE MIR -23 239 5 23 33 0 0 chr3 116566013 116566043 -110958535 + AT_rich Low_complexity Low_complexity 1 30 0 1121 72 0 7 chr3 116568835 116568974 -110955604 + AluY SINE Alu 1 138 -173 28801 30 0 2 chr3 116568974 116570150 -110954428 + L1PA2 LINE L1 1909 3085 -3070 2523 48 0 7 chr3 116570150 116570459 -110954119 + AluY SINE Alu 1 307 -4 28801 30 0 2 chr3 116570459 116573536 -110951042 + L1PA2 LINE L1 3085 6155 0 1423 79 0 0 chr3 116573545 116573722 -110950856 + AluY SINE Alu 127 303 -8 1118 264 43 56 chr3 116575251 116575717 -110948861 - LTR40b LTR ERVL 0 462 3 21 57 0 0 chr3 116576473 116576508 -110948070 + AT_rich Low_complexity Low_complexity 1 35 0 227 220 98 91 chr3 116576877 116577009 -110947569 - Charlie8 DNA MER1_type -2157 260 128 1625 255 79 44 chr3 116578699 116579284 -110945294 - MER77 LTR ERV1 0 605 1 212 240 0 13 chr3 116579623 116579698 -110944880 + (TA)n Simple_repeat Simple_repeat 2 75 0 216 345 0 18 chr3 116580885 116580940 -110943638 + L2 LINE L2 3195 3248 -24 248 229 43 0 chr3 116581915 116581985 -110942593 + MER3 DNA MER1_type 15 87 -122 227 53 0 26 chr3 116581992 116582030 -110942548 + (TTAAA)n Simple_repeat Simple_repeat 1 37 0 24 67 0 0 chr3 116582249 116582294 -110942284 + AT_rich Low_complexity Low_complexity 1 45 0 263 341 67 19 chr3 116586021 116586229 -110938349 + MLT1J1 LTR MaLR 129 346 -100 8276 120 4 51 chr3 116586421 116587158 -110937420 - HSMAR1 DNA Mariner 0 1287 640 1670 137 0 122 chr3 116587158 116587495 -110937083 - AluSx SINE Alu -6 296 1 8276 120 4 51 chr3 116587495 116588095 -110936483 - HSMAR1 DNA Mariner -647 640 13 2387 87 0 3 chr3 116588116 116588427 -110936151 + AluY SINE Alu 1 310 -1 817 330 16 91 chr3 116588469 116589106 -110935472 - MLT2E LTR ERVL -15 613 25 3608 261 76 43 chr3 116589323 116590517 -110934061 - L1ME2 LINE L1 -10 6154 5001 7139 71 6 17 chr3 116590517 116592152 -110932426 - SVA Other Other -724 1386 1 3608 261 76 43 chr3 116592152 116592869 -110931709 - L1ME2 LINE L1 -1163 5001 4309 1671 213 11 14 chr3 116592869 116593235 -110931343 - MLT1A1 LTR MaLR 0 365 1 3608 261 76 43 chr3 116593235 116594781 -110929797 - L1ME2 LINE L1 -1855 4309 2572 1774 262 97 27 chr3 116594776 116595555 -110929023 + L1ME1 LINE L1 4613 5337 -829 * 276 100 0 0 chr3 116595555 116595595 -110928983 + (CA)n Simple_repeat Simple_repeat 1 40 0 1774 262 97 27 chr3 116595595 116595683 -110928895 + L1ME1 LINE L1 5337 5417 -749 2329 175 26 2 chr3 116595683 116596101 -110928477 - MSTA LTR MaLR 0 428 1 1774 262 97 27 chr3 116596101 116596690 -110927888 + L1ME1 LINE L1 5417 6166 0 994 171 29 5 chr3 116596820 116597025 -110927553 + L1MA4 LINE L1 6082 6291 -9 25 31 0 0 chr3 116597034 116597066 -110927512 + AT_rich Low_complexity Low_complexity 1 32 0 327 264 123 25 chr3 116597066 116597342 -110927236 + L1M4 LINE L1 4020 4322 -1824 513 349 25 31 chr3 116597467 116597791 -110926787 + L1MDa LINE L1 141 462 -6078 1057 195 102 16 chr3 116598518 116598831 -110925747 + L1MDa LINE L1 1011 1350 -5193 * 1178 218 33 37 chr3 116598829 116599331 -110925247 + L1MDa LINE L1 2238 2732 -3808 34264 34 12 1 chr3 116600814 116606842 -110917736 - L1PA2 LINE L1 0 6155 4 609 324 86 37 chr3 116607334 116608010 -110916568 - HAL1b LINE L1 -611 737 29 221 225 42 14 chr3 116608026 116608097 -110916481 + T-rich Low_complexity Low_complexity 2 74 0 857 284 119 53 chr3 116608812 116609321 -110915257 + L2 LINE L2 2773 3313 0 21 0 0 0 chr3 116609328 116609349 -110915229 + AT_rich Low_complexity Low_complexity 1 21 0 481 304 175 23 chr3 116609658 116609875 -110914703 - MIR SINE MIR 0 262 13 282 345 88 0 chr3 116610719 116610832 -110913746 + L2 LINE L2 3186 3308 -5 24 0 0 0 chr3 116610849 116610873 -110913705 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr3 116611013 116611037 -110913541 + AT_rich Low_complexity Low_complexity 1 24 0 3257 134 10 6 chr3 116611318 116611827 -110912751 - MER9 LTR ERVK 0 511 1 40629 99 10 7 chr3 116611827 116615351 -110909227 - HERVK9 LTR ERVK 0 7969 4456 185 0 40 0 chr3 116615351 116615376 -110909202 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 40629 99 10 7 chr3 116615376 116617847 -110906731 - HERVK9 LTR ERVK -3513 4456 1 3107 140 18 8 chr3 116617847 116618353 -110906225 - MER9 LTR ERVK 0 511 1 317 346 38 73 chr3 116619376 116619691 -110904887 + L1MEd LINE L1 89 392 -5813 230 302 54 39 chr3 116619767 116619896 -110904682 + L1MEd LINE L1 522 652 -5553 22 56 0 0 chr3 116620256 116620292 -110904286 + AT_rich Low_complexity Low_complexity 1 36 0 1853 43 0 4 chr3 116620567 116620797 -110903781 + L1PA3 LINE L1 5924 6152 -3 453 291 129 43 chr3 116620799 116621295 -110903283 + L1MEd LINE L1 2116 2597 -3618 231 131 49 49 chr3 116621394 116621455 -110903123 + L1MEd LINE L1 2720 2780 -3435 475 307 106 34 chr3 116621456 116621642 -110902936 + L1MEd LINE L1 2782 2953 -3262 431 128 0 13 chr3 116621642 116621720 -110902858 - MADE1 DNA Mariner -3 77 1 475 307 106 34 chr3 116621720 116621969 -110902609 + L1MEd LINE L1 2953 3248 -2967 857 312 19 26 chr3 116622127 116622393 -110902185 + L2 LINE L2 2640 2903 -411 1309 149 60 0 chr3 116623579 116623814 -110900764 + L1PA16 LINE L1 5912 6160 -6 863 277 45 17 chr3 116624457 116624876 -110899702 - Zaphod DNA AcHobo -6 4025 3595 1029 252 132 106 chr3 116624892 116625827 -110898751 - Zaphod DNA AcHobo -3071 960 2 1016 269 11 13 chr3 116626078 116626350 -110898228 - MLT1D LTR MaLR 0 505 245 1122 214 8 26 chr3 116626373 116626640 -110897938 - L1MB5 LINE L1 -12 6162 5901 1414 149 27 9 chr3 116626640 116627022 -110897556 + MLT2A2 LTR ERVL 3 446 -7 1933 186 16 10 chr3 116627033 116627420 -110897158 - L1MB5 LINE L1 -284 5890 5502 2882 109 15 2 chr3 116627420 116627823 -110896755 + MLT2A2 LTR ERVL 1 408 -45 316 157 0 0 chr3 116627810 116627861 -110896717 - MLT2A2 LTR ERVL -44 409 359 * 394 91 0 0 chr3 116627866 116627921 -110896657 - MLT2A2 LTR ERVL -2 451 397 237 62 0 0 chr3 116627983 116628015 -110896563 + THE1-int LTR MaLR 1053 1084 -496 237 65 0 0 chr3 116628015 116628046 -110896532 + (TG)n Simple_repeat Simple_repeat 2 32 0 773 238 104 9 chr3 116628047 116628375 -110896203 - L1MB5 LINE L1 -870 5276 4918 1755 247 10 25 chr3 116628410 116629002 -110895576 - L1MB5 LINE L1 -1397 4749 4187 445 267 14 27 chr3 116629005 116629151 -110895427 - MLT1D LTR MaLR -361 144 1 22 0 0 0 chr3 116629237 116629259 -110895319 + AT_rich Low_complexity Low_complexity 1 22 0 2267 61 7 3 chr3 116629260 116629556 -110895022 + AluY SINE Alu 1 297 -14 745 219 22 0 chr3 116629878 116630061 -110894517 - MER53 DNA DNA -2 187 1 461 306 85 40 chr3 116630184 116630383 -110894195 - MER58C DNA MER1_type -6 209 2 704 350 52 25 chr3 116630684 116631127 -110893451 - LTR16B LTR ERVL -2 462 8 188 163 0 20 chr3 116631219 116631268 -110893310 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 1869 135 3 3 chr3 116632217 116632505 -110892073 - AluSx SINE Alu -16 296 9 259 338 23 12 chr3 116633982 116634099 -110890479 - MIR SINE MIR -56 152 39 40 79 0 0 chr3 116638011 116638100 -110886478 + AT_rich Low_complexity Low_complexity 1 89 0 362 208 0 14 chr3 116638815 116638887 -110885691 - MSTB LTR MaLR 0 426 356 2153 251 77 36 chr3 116639151 116640261 -110884317 + L1ME3A LINE L1 2663 3817 -2329 2819 247 40 3 chr3 116640397 116641374 -110883204 - L1M4 LINE L1 -716 5458 4445 228 366 20 52 chr3 116641391 116641735 -110882843 - L3 LINE CR1 -727 850 518 692 179 0 8 chr3 116642023 116642146 -110882432 + THE1C LTR MaLR 1 122 -253 509 281 0 7 chr3 116642312 116642465 -110882113 + MER9 LTR ERVK 267 418 -93 664 270 12 80 chr3 116642557 116642894 -110881684 + L1ME3A LINE L1 4097 4410 -1736 2626 183 36 44 chr3 116642918 116643607 -110880971 + L1MD2 LINE L1 5175 5853 -506 267 312 72 0 chr3 116643776 116643914 -110880664 + L1ME3A LINE L1 4450 4597 -1549 513 294 28 19 chr3 116643961 116644175 -110880403 + L1ME3A LINE L1 5565 5780 -390 700 255 80 40 chr3 116644179 116644504 -110880074 + L1ME3A LINE L1 5825 6162 -8 2886 173 45 3 chr3 116644521 116644609 -110879969 + L1MA9 LINE L1 5691 5774 -538 1460 224 3 3 chr3 116644609 116644912 -110879666 + AluJo SINE Alu 1 303 -9 204 67 0 0 chr3 116644914 116644944 -110879634 + (CA)n Simple_repeat Simple_repeat 1 30 0 2886 173 45 3 chr3 116644944 116645449 -110879129 + L1MA9 LINE L1 5774 6312 0 23 78 0 0 chr3 116645549 116645600 -110878978 + AT_rich Low_complexity Low_complexity 1 51 0 228 260 24 98 chr3 116646013 116646136 -110878442 + MIR SINE MIR 79 192 -70 1777 159 73 94 chr3 116646202 116646629 -110877949 - MER61B LTR ERV1 0 425 8 401 337 47 25 chr3 116647689 116647965 -110876613 - L1ME3A LINE L1 -220 5950 5669 1961 153 39 25 chr3 116647965 116648324 -110876254 - THE1B LTR MaLR 0 364 1 10243 126 14 2 chr3 116648324 116649885 -110874693 - THE1B-int LTR MaLR 0 1580 1 1983 125 57 28 chr3 116649885 116650237 -110874341 - THE1B LTR MaLR 0 364 3 375 23 0 0 chr3 116650259 116650303 -110874275 + (TA)n Simple_repeat Simple_repeat 2 45 0 1527 201 14 0 chr3 116650303 116650581 -110873997 - AluJb SINE Alu -30 282 1 321 342 41 25 chr3 116650593 116650789 -110873789 - L1 LINE L1 -3009 3137 2939 198 0 0 0 chr3 116650835 116650857 -110873721 + (TATG)n Simple_repeat Simple_repeat 2 23 0 1867 249 39 22 chr3 116651145 116651683 -110872895 - LTR38 LTR ERV1 -9 547 1 1642 273 67 45 chr3 116651732 116652074 -110872504 - L1M4 LINE L1 -1318 4828 4495 2180 70 0 7 chr3 116652074 116652372 -110872206 - L1PA4 LINE L1 -1 6154 5859 1642 273 67 45 chr3 116652372 116653059 -110871519 - L1M4 LINE L1 -1651 4495 3776 12526 132 12 3 chr3 116653064 116655865 -110868713 - L1PA8 LINE L1 -13 6159 3342 13193 90 6 1 chr3 116655981 116657734 -110866844 - HERVL-A2 LTR ERVL -1613 4041 2279 240 86 0 0 chr3 116657737 116657772 -110866806 + (TTG)n Simple_repeat Simple_repeat 1 35 0 22 0 0 0 chr3 116657794 116657816 -110866762 + AT_rich Low_complexity Low_complexity 1 22 0 7578 29 2 0 chr3 116657816 116659128 -110865450 - L1PA3 LINE L1 -3 6152 4840 1974 33 4 0 chr3 116659128 116659369 -110865209 + L1P LINE L1 1707 1948 -4198 8263 90 12 4 chr3 116659369 116661542 -110863036 - HERVL-A2 LTR ERVL -3390 2264 1 2367 109 123 5 chr3 116661542 116661947 -110862631 - MLT2A2 LTR ERVL 0 453 1 2513 120 75 5 chr3 116661947 116662363 -110862215 - LTR1B LTR ERV1 -381 445 1 1176 202 51 60 chr3 116662746 116663227 -110861351 - L1MB1 LINE L1 0 6168 5890 902 263 88 31 chr3 116663343 116664088 -110860490 - L1ME LINE L1 -4796 1284 501 349 305 80 26 chr3 116664104 116664255 -110860323 - L1ME LINE L1 -5770 300 142 1463 182 32 26 chr3 116664561 116664869 -110859709 - AluJb SINE Alu -2 310 1 792 244 10 10 chr3 116665444 116665649 -110858929 - L1MB1 LINE L1 0 6168 5964 5586 167 20 6 chr3 116665659 116666830 -110857748 - L1MA8 LINE L1 -3 6288 5100 239 241 12 0 chr3 116667542 116667625 -110856953 + (TA)n Simple_repeat Simple_repeat 1 84 0 3127 175 136 9 chr3 116667642 116668538 -110856040 + Tigger3b DNA MER2_type 2 1237 -4 204 314 43 0 chr3 116669993 116670063 -110854515 + MIR SINE MIR 81 153 -109 474 263 113 21 chr3 116670190 116670376 -110854202 - MIR SINE MIR -58 204 2 198 0 0 0 chr3 116671191 116671213 -110853365 + (TTTTTA)n Simple_repeat Simple_repeat 3 24 0 21 36 0 0 chr3 116674380 116674408 -110850170 + AT_rich Low_complexity Low_complexity 1 28 0 243 88 0 0 chr3 116674593 116674627 -110849951 + (TAAAAA)n Simple_repeat Simple_repeat 6 39 0 2086 111 7 19 chr3 116675256 116675391 -110849187 + AluSq SINE Alu 1 136 -177 2098 105 3 10 chr3 116675391 116675705 -110848873 + AluSx SINE Alu 1 312 0 2086 111 7 19 chr3 116675705 116675876 -110848702 + AluSq SINE Alu 136 303 -10 487 207 14 0 chr3 116675908 116676048 -110848530 + CT-rich Low_complexity Low_complexity 4 145 0 24085 134 13 6 chr3 116676848 116681643 -110842935 - L1PA8A LINE L1 0 6446 1624 2142 163 6 0 chr3 116681621 116681959 -110842619 - L1PA8A LINE L1 -5534 341 2 * 1736 167 4 0 chr3 116681983 116682264 -110842314 - AluSx SINE Alu -16 296 15 251 167 0 0 chr3 116682264 116682300 -110842278 - AluSx SINE Alu -263 36 1 222 450 0 8 chr3 116682833 116682964 -110841614 + MIR SINE MIR 21 150 -58 1183 237 101 31 chr3 116684337 116684792 -110839786 + Charlie4a DNA MER1_type 16 502 -6 21 0 0 0 chr3 116687688 116687709 -110836869 + AT_rich Low_complexity Low_complexity 1 21 0 2168 113 0 7 chr3 116687789 116688090 -110836488 + AluSq SINE Alu 1 299 -14 1497 207 0 20 chr3 116688322 116688621 -110835957 + AluJo SINE Alu 1 293 -19 332 196 0 0 chr3 116688806 116688862 -110835716 + L1PA16 LINE L1 6053 6108 -58 211 145 13 92 chr3 116688894 116688970 -110835608 + A-rich Low_complexity Low_complexity 2 71 0 1614 54 10 0 chr3 116689153 116689357 -110835221 - L1PA7 LINE L1 0 6154 5949 705 73 0 0 chr3 116689357 116689453 -110835125 + L1PA7 LINE L1 5854 5949 -205 2206 86 0 49 chr3 116689465 116689790 -110834788 - AluSg SINE Alu -1 309 1 678 267 109 5 chr3 116689889 116690091 -110834487 + MIR SINE MIR 2 224 -38 379 293 54 30 chr3 116690249 116690416 -110834162 - L2 LINE L2 -900 2414 2244 598 31 52 0 chr3 116691298 116691395 -110833183 + (TAGA)n Simple_repeat Simple_repeat 4 105 0 237 248 202 0 chr3 116695833 116695942 -110828636 - MIR SINE MIR -62 200 70 1979 120 7 32 chr3 116696106 116696414 -110828164 + AluSx SINE Alu 1 300 -12 2414 204 41 9 chr3 116696890 116697429 -110827149 + L1 LINE L1 4848 5403 -743 343 315 76 22 chr3 116697606 116697790 -110826788 + MER20B DNA MER1_type 4 197 -586 849 207 64 10 chr3 116700045 116700248 -110824330 + L1MA7 LINE L1 6052 6265 -26 5516 192 28 4 chr3 116700704 116702825 -110821753 - L1PA16 LINE L1 -1 6165 3997 212 0 0 35 chr3 116703111 116703140 -110821438 + (TTTTA)n Simple_repeat Simple_repeat 2 29 0 1215 150 43 51 chr3 116703145 116703379 -110821199 - AluJo SINE Alu -38 274 43 334 241 84 35 chr3 116703426 116703913 -110820665 - L1MC3 LINE L1 -229 7615 7186 25 31 0 0 chr3 116703983 116704015 -110820563 + AT_rich Low_complexity Low_complexity 1 32 0 193 302 0 19 chr3 116704502 116704555 -110820023 - L2 LINE L2 -61 3211 3160 180 370 35 54 chr3 116704680 116704883 -110819695 - L2 LINE L2 -345 2969 2771 350 224 0 0 chr3 116704884 116704960 -110819618 + L1 LINE L1 4469 4544 -1602 1029 231 0 0 chr3 116704961 116705177 -110819401 + L1PA16 LINE L1 4850 5065 -1081 4336 169 65 5 chr3 116705186 116706118 -110818460 + L1PA16 LINE L1 5169 6156 -10 252 314 63 60 chr3 116707364 116707420 -110817158 + MLT1L LTR MaLR 3 57 -558 25 31 0 0 chr3 116707420 116707452 -110817126 + AT_rich Low_complexity Low_complexity 1 32 0 252 314 63 60 chr3 116707452 116707616 -110816962 + MLT1L LTR MaLR 57 255 -360 1703 155 86 0 chr3 116809090 116809368 -110715210 - AluJb SINE Alu -10 302 1 1033 203 38 9 chr3 116809368 116809580 -110714998 - MIR SINE MIR -39 223 6 4308 228 18 7 chr3 116809798 116810671 -110713907 - L1M1 LINE L1 -6525 1040 158 227 362 11 0 chr3 116810823 116810917 -110713661 - L1PA13 LINE L1 -5402 2179 2085 679 299 85 64 chr3 116811169 116811638 -110712940 - L1PA13 LINE L1 -6356 1229 751 2325 78 0 10 chr3 116812180 116812488 -110712090 - AluY SINE Alu -6 305 1 1112 30 0 8 chr3 116812492 116812625 -110711953 - AluY SINE Alu -179 132 1 1868 147 59 59 chr3 116812630 116812798 -110711780 - THE1B LTR MaLR -10 354 187 2038 95 67 0 chr3 116812798 116813082 -110711496 - AluSg SINE Alu -4 306 4 1868 147 59 59 chr3 116813082 116813267 -110711311 - THE1B LTR MaLR -176 188 1 42 48 0 0 chr3 116813313 116813376 -110711202 + AT_rich Low_complexity Low_complexity 1 63 0 932 231 100 39 chr3 116813534 116813650 -110710928 + AluJo SINE Alu 5 112 -200 249 33 0 0 chr3 116813650 116813680 -110710898 + (TAA)n Simple_repeat Simple_repeat 2 31 0 932 231 100 39 chr3 116813680 116813823 -110710755 + AluJo SINE Alu 112 280 -32 1115 66 11 17 chr3 116813825 116814006 -110710572 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 321 155 0 0 chr3 116814006 116814064 -110710514 + GA-rich Low_complexity Low_complexity 1 58 0 267 256 93 70 chr3 116814064 116814334 -110710244 - LTR37A LTR ERV1 -18 408 133 283 23 45 0 chr3 116814746 116814790 -110709788 + (TA)n Simple_repeat Simple_repeat 2 47 0 2384 79 3 3 chr3 116815069 116815374 -110709204 + AluSc SINE Alu 2 306 -3 510 286 48 20 chr3 116815466 116815718 -110708860 + L1MC5 LINE L1 7622 7880 -81 6328 55 3 7 chr3 116816077 116817001 -110707577 - L1PA6 LINE L1 -103 6051 5130 10737 143 58 38 chr3 116817011 116818754 -110705824 + L1 LINE L1 1449 3155 -4410 1131 163 79 9 chr3 116818754 116818969 -110705609 + MER30 DNA MER1_type 1 230 0 10737 143 58 38 chr3 116818969 116819131 -110705447 + L1 LINE L1 3155 3312 -4253 1417 123 157 4 chr3 116819131 116819392 -110705186 + AluY SINE Alu 1 301 0 10737 143 58 38 chr3 116819392 116819570 -110705008 + L1 LINE L1 3312 3575 -3990 467 173 134 0 chr3 116819566 116819701 -110704877 + L1 LINE L1 6575 6752 -817 * 2255 121 22 19 chr3 116822961 116823324 -110701254 + THE1B LTR MaLR 1 364 0 305 363 87 22 chr3 116823474 116823803 -110700775 - L2 LINE L2 -223 3049 2642 188 218 18 0 chr3 116823816 116823871 -110700707 - L2 LINE L2 -911 2403 2348 620 257 100 60 chr3 116824075 116824290 -110700288 - MLT2C1 LTR ERVL -65 332 98 2084 175 43 24 chr3 116824290 116824713 -110699865 + MSTB1 LTR MaLR 1 431 -1 620 257 100 60 chr3 116824713 116824816 -110699762 - MLT2C1 LTR ERVL -299 98 1 344 277 188 12 chr3 116825130 116825386 -110699192 + L1ME4a LINE L1 5562 5862 -259 1880 114 0 60 chr3 116826177 116826513 -110698065 - AluSc SINE Alu 0 318 1 571 243 76 0 chr3 116826637 116826781 -110697797 - MER3 DNA MER1_type -53 156 2 321 273 35 131 chr3 116827133 116827415 -110697163 + LTR33A LTR ERVL 269 523 0 263 248 8 0 chr3 116828302 116828423 -110696155 + CT-rich Low_complexity Low_complexity 2 123 0 191 301 14 41 chr3 116828746 116828819 -110695759 + L3 LINE CR1 1506 1576 -1 220 405 68 0 chr3 116828913 116829076 -110695502 + MIR SINE MIR 2 175 -87 194 258 15 45 chr3 116829139 116829205 -110695373 + MIR SINE MIR 198 261 -1 21 0 0 0 chr3 116829382 116829403 -110695175 + AT_rich Low_complexity Low_complexity 1 21 0 732 189 16 0 chr3 116829564 116829691 -110694887 + Tigger7 DNA MER2_type 1 129 -2358 404 276 109 16 chr3 116829778 116829970 -110694608 + MLT1H1 LTR MaLR 346 555 0 259 309 24 12 chr3 116830242 116830326 -110694252 + HAL1 LINE L1 1 85 -2422 6252 61 6 67 chr3 116830640 116831843 -110692735 + L1PA7 LINE L1 4637 5761 -393 1495 113 0 0 chr3 116831843 116832056 -110692522 + AluY SINE Alu 99 311 0 6252 61 6 67 chr3 116832056 116832425 -110692153 + L1PA7 LINE L1 5761 6151 -3 189 328 0 0 chr3 116832425 116832489 -110692089 - L2 LINE L2 -1066 2248 2185 32 81 0 0 chr3 116832563 116832637 -110691941 + AT_rich Low_complexity Low_complexity 1 74 0 1920 160 41 5 chr3 116832643 116833031 -110691547 - L1MA4 LINE L1 -11 6289 5888 1634 185 10 13 chr3 116833749 116834062 -110690516 + AluSx SINE Alu 1 312 0 23 68 0 0 chr3 116834337 116834381 -110690197 + AT_rich Low_complexity Low_complexity 1 44 0 209 367 136 12 chr3 116834548 116834717 -110689861 - MIR3 SINE MIR -11 197 8 409 289 33 50 chr3 116836117 116836297 -110688281 + LTR16A LTR ERVL 172 348 -102 225 94 0 0 chr3 116837246 116837278 -110687300 + (GA)n Simple_repeat Simple_repeat 1 32 0 255 31 0 0 chr3 116837488 116837520 -110687058 + (T)n Simple_repeat Simple_repeat 1 32 0 6601 167 38 7 chr3 116838440 116839653 -110684925 - HSMAR2 DNA Mariner -2 1300 50 1932 144 0 0 chr3 116840119 116840418 -110684160 + AluSx SINE Alu 11 309 -3 649 290 71 15 chr3 116840901 116841294 -110683284 - HAL1b LINE L1 -546 802 388 2234 48 65 20 chr3 116841307 116841600 -110682978 - AluY SINE Alu -5 306 1 369 343 123 17 chr3 116842051 116842351 -110682227 - L2 LINE L2 -514 2800 2469 331 358 57 23 chr3 116842503 116842679 -110681899 - L2 LINE L2 -1166 2148 1967 422 318 79 19 chr3 116843129 116843343 -110681235 + LTR16C LTR ERVL 265 491 0 24 53 0 0 chr3 116843367 116843405 -110681173 + AT_rich Low_complexity Low_complexity 1 38 0 31 0 0 0 chr3 116843684 116843715 -110680863 + AT_rich Low_complexity Low_complexity 1 31 0 1513 247 60 45 chr3 116844205 116844670 -110679908 + L1M3 LINE L1 4 475 -5909 1618 249 43 37 chr3 116844671 116845366 -110679212 + L1M3 LINE L1 2777 3475 -2907 40724 67 1 4 chr3 116845369 116851517 -110673061 - L1PA5 LINE L1 0 6154 22 6089 253 60 19 chr3 116851516 116851628 -110672950 + L1M3 LINE L1 3458 3564 -2818 * 213 39 0 0 chr3 116851628 116851654 -110672924 + (TC)n Simple_repeat Simple_repeat 1 26 0 180 0 0 0 chr3 116851655 116851675 -110672903 + (TCTA)n Simple_repeat Simple_repeat 2 21 0 6089 253 60 19 chr3 116851675 116852980 -110671598 + L1M3 LINE L1 3564 4991 -1391 1995 151 0 6 chr3 116852980 116853292 -110671286 - AluSx SINE Alu 0 312 3 6089 253 60 19 chr3 116853292 116853920 -110670658 + L1M3 LINE L1 4991 5591 -791 1806 199 44 24 chr3 116854142 116854553 -110670025 + L1M3 LINE L1 5605 6023 -384 207 0 0 0 chr3 116854556 116854579 -110669999 + (TA)n Simple_repeat Simple_repeat 2 24 0 180 0 0 0 chr3 116854620 116854640 -110669938 + (TA)n Simple_repeat Simple_repeat 2 21 0 249 162 0 108 chr3 116854640 116854706 -110669872 + L1MB3 LINE L1 5749 5808 -504 313 141 42 0 chr3 116854706 116854777 -110669801 - L1MA7 LINE L1 -2 6289 6216 2056 163 11 11 chr3 116854777 116855151 -110669427 - L1MA5 LINE L1 -131 6169 5796 1537 191 67 14 chr3 116855152 116855523 -110669055 + L1MB3 LINE L1 5791 6181 -2 28 79 0 0 chr3 116855523 116855586 -110668992 + AT_rich Low_complexity Low_complexity 1 63 0 1031 208 25 25 chr3 116855758 116855994 -110668584 + MER46A DNA MER2_type 1 236 0 32 57 0 0 chr3 116856426 116856479 -110668099 + AT_rich Low_complexity Low_complexity 1 53 0 180 135 0 0 chr3 116856813 116856850 -110667728 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 2420 62 0 34 chr3 116857853 116858175 -110666403 - AluY SINE Alu 0 311 1 26 0 0 0 chr3 116860036 116860062 -110664516 + AT_rich Low_complexity Low_complexity 1 26 0 200 132 26 0 chr3 116860409 116860447 -110664131 + A-rich Low_complexity Low_complexity 4 42 0 1011 130 0 0 chr3 116861744 116861913 -110662665 + (GGAA)n Simple_repeat Simple_repeat 2 170 0 265 232 122 147 chr3 116863914 116864233 -110660345 + LTR41 LTR ERVL 1 311 -462 818 310 114 40 chr3 116864262 116864665 -110659913 + LTR41 LTR ERVL 239 671 -102 1735 202 142 12 chr3 116864684 116865085 -110659493 + MLT2C2 LTR ERVL 10 462 -2 383 154 0 0 chr3 116865128 116865193 -110659385 + LTR41 LTR ERVL 700 764 -9 456 322 52 85 chr3 116865754 116866142 -110658436 + L2 LINE L2 2423 2797 -517 367 347 16 74 chr3 116866163 116866405 -110658173 - MIR SINE MIR -5 257 30 566 355 58 30 chr3 116866475 116866875 -110657703 + L2 LINE L2 2851 3261 -52 381 294 46 30 chr3 116867437 116867634 -110656944 - L2 LINE L2 -2521 793 594 2246 92 0 16 chr3 116868409 116868723 -110655855 + AluSc SINE Alu 1 309 0 25 65 0 0 chr3 116869254 116869300 -110655278 + AT_rich Low_complexity Low_complexity 1 46 0 22 88 0 0 chr3 116869353 116869410 -110655168 + AT_rich Low_complexity Low_complexity 1 57 0 192 311 0 66 chr3 116870056 116870178 -110654400 + MIR SINE MIR 83 196 -66 315 240 50 33 chr3 116870434 116870555 -110654023 + L1ME1 LINE L1 24 146 -6277 2234 277 52 18 chr3 116870580 116871980 -110652598 + L1ME1 LINE L1 5494 6948 -13 21 36 0 0 chr3 116871981 116872009 -110652569 + AT_rich Low_complexity Low_complexity 1 28 0 224 197 16 16 chr3 116872438 116872499 -110652079 + A-rich Low_complexity Low_complexity 2 62 0 210 233 0 0 chr3 116872888 116872948 -110651630 + (CA)n Simple_repeat Simple_repeat 1 60 0 4428 72 5 34 chr3 116873572 116874638 -110649940 - MER11A LTR ERVK 0 1266 1 1945 117 0 0 chr3 116875018 116875283 -110649295 - AluSc SINE Alu -11 298 34 216 270 71 87 chr3 116875287 116875413 -110649165 + MER5B DNA MER1_type 40 163 -15 1820 157 3 3 chr3 116877312 116877611 -110646967 - AluSx SINE Alu -13 299 1 371 259 54 60 chr3 116877635 116877801 -110646777 + MIR SINE MIR 88 252 -10 204 97 0 0 chr3 116878176 116878207 -110646371 + (TG)n Simple_repeat Simple_repeat 2 32 0 2867 141 22 0 chr3 116879701 116880149 -110644429 - LTR24 LTR ERV1 0 467 10 209 226 0 19 chr3 116880514 116880567 -110644011 + T-rich Low_complexity Low_complexity 4 55 0 219 183 0 42 chr3 116880719 116880790 -110643788 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 3544 170 26 39 chr3 116880998 116881369 -110643209 + MER72 LTR ERV1 10 369 -353 2316 58 34 0 chr3 116881369 116881664 -110642914 - AluY SINE Alu -6 305 1 3544 170 26 39 chr3 116881664 116882010 -110642568 + MER72 LTR ERV1 369 718 -4 30 0 0 0 chr3 116882204 116882234 -110642344 + AT_rich Low_complexity Low_complexity 1 30 0 303 146 344 10 chr3 116882372 116882468 -110642110 + MER39 LTR ERV1 6 133 -574 * 2121 162 74 12 chr3 116882436 116882572 -110642006 + MER39 LTR ERV1 250 376 -331 1571 155 32 29 chr3 116882572 116882913 -110641665 + L1MA4 LINE L1 5954 6295 -5 2121 162 74 12 chr3 116882913 116883207 -110641371 + MER39 LTR ERV1 376 707 0 186 256 0 0 chr3 116883257 116883296 -110641282 + L2 LINE L2 3257 3295 -18 23 68 0 0 chr3 116883574 116883618 -110640960 + AT_rich Low_complexity Low_complexity 1 44 0 25 65 0 0 chr3 116883652 116883698 -110640880 + AT_rich Low_complexity Low_complexity 1 46 0 11208 211 42 20 chr3 116884195 116889549 -110635029 + L1PA16 LINE L1 1364 6860 -9 2482 155 45 8 chr3 116889562 116890072 -110634506 + L1MA6 LINE L1 5769 6297 -3 354 138 101 116 chr3 116890080 116890218 -110634360 + Charlie5 DNA MER1_type 2481 2616 0 338 273 27 80 chr3 116890911 116891098 -110633480 + MER69A DNA AcHobo 1 177 0 437 79 11 112 chr3 116891247 116891336 -110633242 - MADE1 DNA Mariner 0 80 1 198 0 0 0 chr3 116891370 116891392 -110633186 + (TAAA)n Simple_repeat Simple_repeat 1 22 0 27 0 0 0 chr3 116892160 116892187 -110632391 + AT_rich Low_complexity Low_complexity 1 27 0 341 351 96 17 chr3 116893417 116893642 -110630936 - LTR16A LTR ERVL -8 442 179 1106 243 85 13 chr3 116893642 116893959 -110630619 + MER58B DNA MER1_type 1 340 -1 341 351 96 17 chr3 116893959 116894078 -110630500 - LTR16A LTR ERVL -271 179 71 1185 15 0 0 chr3 116895392 116895529 -110629049 + L1PA2 LINE L1 6019 6155 0 406 236 67 107 chr3 116895804 116896021 -110628557 - L2 LINE L2 -322 2991 2782 994 310 4 4 chr3 116896022 116896296 -110628282 - LTR40a LTR ERVL 0 519 246 328 122 0 0 chr3 116896303 116896352 -110628226 - MLT2B1 LTR ERVL -8 512 464 210 212 30 30 chr3 116896372 116896471 -110628107 + (TA)n Simple_repeat Simple_repeat 2 100 0 1543 186 169 45 chr3 116896485 116896910 -110627668 - MLT2B1 LTR ERVL -40 480 3 469 261 7 36 chr3 116896930 116897068 -110627510 - LTR40a LTR ERVL -290 229 96 1263 305 128 16 chr3 116897096 116897581 -110626997 - L2 LINE L2 -528 2786 2248 522 83 0 0 chr3 116897581 116897653 -110626925 + (CA)n Simple_repeat Simple_repeat 2 73 0 6069 49 12 3 chr3 116898130 116898862 -110625716 - SVA Other Other -2 1384 646 2404 59 3 3 chr3 116898899 116899204 -110625374 - AluY SINE Alu -4 307 3 258 318 125 42 chr3 116900024 116900216 -110624362 - L2 LINE L2 -448 2866 2659 838 170 0 36 chr3 116900348 116900513 -110624065 + AluJb SINE Alu 1 159 -153 270 0 0 0 chr3 116900543 116900573 -110624005 + (A)n Simple_repeat Simple_repeat 1 30 0 343 122 24 37 chr3 116901078 116901160 -110623418 - L1MD3 LINE L1 0 7995 7915 255 267 192 47 chr3 116901174 116901346 -110623232 + L2 LINE L2 3116 3312 -1 224 299 15 0 chr3 116901348 116901415 -110623163 - L2 LINE L2 -1062 2252 2185 1661 156 7 36 chr3 116901418 116901719 -110622859 - MER4A LTR ERV1 0 664 373 329 252 0 39 chr3 116902094 116902249 -110622329 + AluJb SINE Alu 11 159 -143 315 146 0 0 chr3 116902280 116902335 -110622243 + (A)n Simple_repeat Simple_repeat 1 55 0 343 122 24 37 chr3 116902814 116902896 -110621682 - L1MD3 LINE L1 0 7995 7915 255 267 192 47 chr3 116902910 116903082 -110621496 + L2 LINE L2 3116 3312 -1 224 299 15 0 chr3 116903084 116903151 -110621427 - L2 LINE L2 -1062 2252 2185 1647 153 8 33 chr3 116903154 116903508 -110621070 - MER4A LTR ERV1 0 664 261 527 120 10 30 chr3 116903508 116903608 -110620970 - MER4A LTR ERV1 -566 98 1 218 312 145 39 chr3 116903680 116903835 -110620743 - L2 LINE L2 -1241 2073 1936 212 0 36 0 chr3 116903835 116903863 -110620715 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 218 312 145 39 chr3 116903863 116904018 -110620560 - L2 LINE L2 -1378 1936 1730 23 0 0 0 chr3 116904268 116904291 -110620287 + AT_rich Low_complexity Low_complexity 1 23 0 2177 116 12 79 chr3 116904311 116904715 -110619863 + MER51B LTR ERV1 1 377 0 264 77 0 0 chr3 116905021 116905060 -110619518 + (CA)n Simple_repeat Simple_repeat 2 40 0 310 305 29 9 chr3 116905303 116905408 -110619170 + MER94 DNA DNA 6 112 -22 202 226 0 16 chr3 116905599 116905661 -110618917 + (TATATG)n Simple_repeat Simple_repeat 2 62 0 200 297 0 0 chr3 116905879 116905943 -110618635 + A-rich Low_complexity Low_complexity 1 64 0 22 0 0 0 chr3 116906218 116906240 -110618338 + AT_rich Low_complexity Low_complexity 1 22 0 309 51 0 0 chr3 116908020 116908059 -110616519 + (T)n Simple_repeat Simple_repeat 1 39 0 242 317 24 0 chr3 116909545 116909627 -110614951 + MIR SINE MIR 178 261 -1 2023 111 47 3 chr3 116909869 116910167 -110614411 - AluSx SINE Alu -1 311 1 754 320 53 64 chr3 116910245 116910814 -110613764 - L2 LINE L2 -5 3308 2747 9744 105 9 1 chr3 116911440 116913642 -110610936 - L1PA8 LINE L1 -1 6171 3943 308 292 62 0 chr3 116914031 116914127 -110610451 - L2 LINE L2 -59 3254 3153 241 269 92 50 chr3 116914267 116914386 -110610192 - LTR16A1 LTR ERVL -2 455 332 250 203 31 47 chr3 116914895 116914959 -110609619 - MIR3 SINE MIR -48 160 98 351 335 118 6 chr3 116916701 116916862 -110607716 - L2 LINE L2 -12 3301 3123 351 96 0 0 chr3 116916974 116917026 -110607552 + (TG)n Simple_repeat Simple_repeat 2 53 0 932 255 0 72 chr3 116917227 116917462 -110607116 - MER58A DNA MER1_type -5 219 2 432 257 50 45 chr3 116917542 116917744 -110606834 - MER115 DNA AcHobo -31 662 460 683 362 16 8 chr3 116917800 116918054 -110606524 - MER115 DNA AcHobo -425 268 13 2411 187 6 25 chr3 116918120 116918596 -110605982 + MLT1C LTR MaLR 1 467 0 207 350 16 24 chr3 116918768 116918891 -110605687 + L2 LINE L2 3191 3312 -1 275 186 17 17 chr3 116918891 116918950 -110605628 + GA-rich Low_complexity Low_complexity 4 62 0 512 295 83 78 chr3 116919275 116919779 -110604799 - L2 LINE L2 -1 3312 2792 189 331 25 50 chr3 116919817 116919938 -110604640 - MIR3 SINE MIR -10 198 81 2152 94 10 3 chr3 116919943 116920231 -110604347 + AluSp SINE Alu 3 292 -21 751 262 5 5 chr3 116920319 116920506 -110604072 - MER5A DNA MER1_type 0 189 3 229 310 20 30 chr3 116921438 116921538 -110603040 + L2 LINE L2 2874 2972 -342 320 270 118 33 chr3 116921606 116921758 -110602820 - MLT1H LTR MaLR -383 166 2 1914 197 19 16 chr3 116921758 116922134 -110602444 - MSTD LTR MaLR 0 396 20 236 313 99 57 chr3 116922177 116922388 -110602190 - MSTD-int LTR MaLR -1 1370 1151 198 0 0 0 chr3 116922492 116922514 -110602064 + (TA)n Simple_repeat Simple_repeat 2 23 0 4816 92 27 0 chr3 116923239 116923942 -110600636 - LTR30 LTR ERV1 0 722 1 420 313 6 24 chr3 116923991 116924157 -110600421 - MLT1H LTR MaLR -308 241 79 1134 180 14 0 chr3 116924376 116924598 -110599980 - L1MA9 LINE L1 0 6312 6088 1263 178 174 3 chr3 116924797 116925084 -110599494 - L1PB3 LINE L1 -7 6147 5812 198 118 0 0 chr3 116925120 116925154 -110599424 + (TG)n Simple_repeat Simple_repeat 1 34 0 23 54 0 0 chr3 116925302 116925339 -110599239 + AT_rich Low_complexity Low_complexity 1 37 0 42930 30 21 1 chr3 116925490 116931522 -110593056 - L1HS LINE L1 0 6155 1 1875 177 22 30 chr3 116931749 116932117 -110592461 + MLT1A1 LTR MaLR 1 365 0 2110 120 27 0 chr3 116932123 116932422 -110592156 - AluSp SINE Alu -6 307 1 4887 141 156 35 chr3 116932652 116933751 -110590827 + MER11B LTR ERVK 1 1232 -4 23 0 0 0 chr3 116934421 116934444 -110590134 + AT_rich Low_complexity Low_complexity 1 23 0 225 0 0 0 chr3 116935455 116935480 -110589098 + (TG)n Simple_repeat Simple_repeat 1 25 0 297 0 0 0 chr3 116936563 116936596 -110587982 + (TCTA)n Simple_repeat Simple_repeat 2 34 0 337 250 71 0 chr3 116936596 116936680 -110587898 + L1MC4 LINE L1 6614 6703 -1339 * 361 244 67 0 chr3 116936606 116936696 -110587882 - L1MC4 LINE L1 -1339 6703 6608 764 265 117 121 chr3 116936723 116937776 -110586802 - L2 LINE L2 -31 3282 2200 347 284 46 9 chr3 116938078 116938187 -110586391 + MLT1J LTR MaLR 350 462 -49 846 288 69 9 chr3 116938242 116938575 -110586003 - L2 LINE L2 -1103 2211 1859 232 284 10 20 chr3 116938604 116938614 -110585964 + (TA)n Simple_repeat Simple_repeat 2 11 -91 198 0 0 0 chr3 116938614 116938636 -110585942 + (TG)n Simple_repeat Simple_repeat 1 22 0 232 284 10 20 chr3 116938636 116938727 -110585851 + (TA)n Simple_repeat Simple_repeat 11 102 0 237 204 79 66 chr3 116938943 116939095 -110585483 - L1ME LINE L1 -197 5924 5771 25 31 0 0 chr3 116939101 116939133 -110585445 + AT_rich Low_complexity Low_complexity 1 32 0 210 128 0 0 chr3 116940058 116940097 -110584481 + (GA)n Simple_repeat Simple_repeat 2 40 0 24 67 0 0 chr3 116940523 116940568 -110584010 + AT_rich Low_complexity Low_complexity 1 45 0 25 31 0 0 chr3 116940682 116940714 -110583864 + AT_rich Low_complexity Low_complexity 1 32 0 315 0 0 0 chr3 116940800 116940835 -110583743 + (TA)n Simple_repeat Simple_repeat 2 36 0 375 60 0 0 chr3 116941206 116941256 -110583322 + (CA)n Simple_repeat Simple_repeat 2 51 0 182 262 155 12 chr3 116942311 116942395 -110582183 - MIR SINE MIR -13 249 154 288 284 15 0 chr3 116942496 116942598 -110581980 - MIR SINE MIR -65 143 37 232 273 18 0 chr3 116942724 116942779 -110581799 + L2 LINE L2 3250 3305 -8 23 33 0 0 chr3 116942928 116942958 -110581620 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr3 116943316 116943348 -110581230 + AT_rich Low_complexity Low_complexity 1 32 0 297 281 39 47 chr3 116945384 116945512 -110579066 - MIR SINE MIR -110 152 26 239 246 79 44 chr3 116948410 116948524 -110576054 + L2 LINE L2 3114 3231 -82 194 423 27 0 chr3 116949205 116949316 -110575262 - L2 LINE L2 -9 3263 3150 271 265 0 49 chr3 116949352 116949454 -110575124 + CT-rich Low_complexity Low_complexity 5 101 0 27 0 0 0 chr3 116949621 116949648 -110574930 + AT_rich Low_complexity Low_complexity 1 27 0 198 191 0 0 chr3 116949714 116949756 -110574822 + (TA)n Simple_repeat Simple_repeat 2 43 0 24 0 0 0 chr3 116950502 116950526 -110574052 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr3 116951027 116951058 -110573520 + AT_rich Low_complexity Low_complexity 1 31 0 1210 105 0 6 chr3 116951160 116951331 -110573247 + AluSg/x SINE Alu 132 301 -11 694 178 0 0 chr3 116951441 116951570 -110573008 - AluSg/x SINE Alu -5 307 179 21 0 0 0 chr3 116951717 116951738 -110572840 + AT_rich Low_complexity Low_complexity 1 21 0 1890 118 30 10 chr3 116951738 116952043 -110572535 - AluSx SINE Alu -1 311 1 724 284 18 22 chr3 116952082 116952311 -110572267 - MIR SINE MIR -17 245 18 301 364 73 23 chr3 116952561 116952781 -110571797 - MIR3 SINE MIR -3 259 29 919 287 98 59 chr3 116953513 116953990 -110570588 + MLT1H LTR MaLR 1 496 -53 189 0 0 0 chr3 116954399 116954420 -110570158 + (CAA)n Simple_repeat Simple_repeat 1 21 0 1910 129 0 11 chr3 116955759 116956038 -110568540 + AluSx SINE Alu 1 276 -36 381 43 0 0 chr3 116956040 116956087 -110568491 + (TAAA)n Simple_repeat Simple_repeat 4 50 0 296 353 129 4 chr3 116956102 116956357 -110568221 + L3 LINE CR1 1227 1513 -64 362 39 19 0 chr3 116956595 116956647 -110567931 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 71 0 0 chr3 116957288 116957330 -110567248 + AT_rich Low_complexity Low_complexity 1 42 0 37 0 0 0 chr3 116957459 116957496 -110567082 + AT_rich Low_complexity Low_complexity 1 37 0 237 326 82 15 chr3 116957557 116957692 -110566886 + MIR3 SINE MIR 42 185 -23 459 281 38 35 chr3 116958109 116958426 -110566152 - L1MC5 LINE L1 -35 7926 7609 4286 44 0 4 chr3 116959024 116959551 -110565027 - L1PA5 LINE L1 -5 6149 5625 402 305 93 45 chr3 116959650 116960376 -110564202 - L1MEc LINE L1 -2663 3552 2745 230 221 91 0 chr3 116960786 116960863 -110563715 - L1MEc LINE L1 -4092 2304 2221 360 345 74 13 chr3 116961396 116961625 -110562953 - HAL1 LINE L1 -862 1645 1403 881 227 50 15 chr3 116961652 116962088 -110562490 - L1MC/D LINE L1 -743 5403 4992 2797 101 37 16 chr3 116963454 116963889 -110560689 - MLT2A1 LTR ERVL 0 444 1 41981 87 10 9 chr3 116963889 116969535 -110555043 - HERVL-A1-A1 LTR ERVL 0 5654 1 3086 74 35 7 chr3 116969535 116969967 -110554611 - MLT2A1 LTR ERVL 0 444 1 23 0 0 0 chr3 116970515 116970538 -110554040 + AT_rich Low_complexity Low_complexity 1 23 0 4882 284 68 37 chr3 116971438 116973352 -110551226 + L1M2b LINE L1 1 1973 -5236 2705 219 5 0 chr3 116973353 116973955 -110550623 - L1 LINE L1 -1437 4709 4105 1826 231 14 33 chr3 116973949 116974439 -110550139 + L1P LINE L1 4744 5224 -922 * 10396 198 39 17 chr3 116974461 116976467 -110548111 + L1M2b LINE L1 3003 4962 -2246 2306 151 5 0 chr3 116976467 116976838 -110547740 + THE1C LTR MaLR 3 375 0 10396 198 39 17 chr3 116976838 116977530 -110547048 + L1M2b LINE L1 4962 5771 -1437 261 0 0 0 chr3 116977530 116977559 -110547019 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 10396 198 39 17 chr3 116977559 116977607 -110546971 + L1M2b LINE L1 5771 5816 -1392 2015 165 63 39 chr3 116977607 116978004 -110546574 + MSTA LTR MaLR 1 415 -13 343 106 4 12 chr3 116978041 116978112 -110546466 - L1MA7 LINE L1 -94 6197 6145 499 138 11 0 chr3 116978115 116978209 -110546369 + L1MA7 LINE L1 6197 6291 0 234 259 0 0 chr3 116978278 116978332 -110546246 + (TATATG)n Simple_repeat Simple_repeat 2 55 0 952 248 90 70 chr3 116978432 116978887 -110545691 - MLT2C2 LTR ERVL 0 464 1 235 247 39 0 chr3 116978994 116979071 -110545507 + MIR SINE MIR 114 193 -69 2072 133 0 0 chr3 116979072 116979400 -110545178 - AluSx SINE Alu 0 328 1 24 0 0 0 chr3 116979407 116979431 -110545147 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 116979602 116979623 -110544955 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr3 116979724 116979761 -110544817 + AT_rich Low_complexity Low_complexity 1 37 0 22 80 0 0 chr3 116979782 116979832 -110544746 + AT_rich Low_complexity Low_complexity 1 50 0 535 273 66 26 chr3 116980296 116980523 -110544055 - MIR SINE MIR -24 238 3 408 300 7 93 chr3 116980671 116980941 -110543637 + L1ME LINE L1 5412 5658 -506 483 224 0 0 chr3 116981642 116981727 -110542851 - Tigger7 DNA MER2_type 0 2487 2403 * 2520 180 74 18 chr3 116981726 116982227 -110542351 - Tigger7 DNA MER2_type -1958 529 1 267 31 0 0 chr3 116983324 116983356 -110541222 + (CA)n Simple_repeat Simple_repeat 1 32 0 23 0 0 0 chr3 116984468 116984491 -110540087 + AT_rich Low_complexity Low_complexity 1 23 0 318 281 0 0 chr3 116984687 116984751 -110539827 + MER21B LTR ERV1 26 89 -774 * 1832 238 28 36 chr3 116984750 116985514 -110539064 + MER21B LTR ERV1 46 840 -23 741 272 65 9 chr3 116985650 116986108 -110538470 + L1ME3 LINE L1 5596 6131 -31 21 0 0 0 chr3 116986800 116986821 -110537757 + AT_rich Low_complexity Low_complexity 1 21 0 640 125 10 10 chr3 116986859 116986963 -110537615 - MLT1A1 LTR MaLR -254 111 8 2413 115 16 16 chr3 116986976 116987351 -110537227 - THE1C LTR MaLR 0 375 1 9087 156 19 15 chr3 116987351 116988532 -110536046 - THE1C-int LTR MaLR 0 1580 389 3939 28 0 72 chr3 116988532 116989062 -110535516 + L1PA5 LINE L1 5658 6149 -5 9087 156 19 15 chr3 116989062 116989435 -110535143 - THE1C-int LTR MaLR -1191 389 19 1462 106 78 5 chr3 116989436 116989654 -110534924 - THE1C LTR MaLR -139 236 3 21 36 0 0 chr3 116989949 116989977 -110534601 + AT_rich Low_complexity Low_complexity 1 28 0 1854 163 49 85 chr3 116990117 116990188 -110534390 - MSTB1 LTR MaLR 0 432 360 2116 137 0 6 chr3 116990188 116990503 -110534075 + AluSq SINE Alu 1 313 0 1099 98 0 16 chr3 116990513 116990696 -110533882 + (GAAAA)n Simple_repeat Simple_repeat 1 180 0 1854 163 49 85 chr3 116990696 116991061 -110533517 - MSTB1 LTR MaLR -81 351 1 399 300 44 25 chr3 116991968 116992128 -110532450 - MER69A DNA AcHobo 0 177 15 183 42 0 0 chr3 116992666 116992690 -110531888 + (CAA)n Simple_repeat Simple_repeat 2 25 0 11751 214 48 19 chr3 116992924 116997115 -110527463 - L1MA4 LINE L1 -359 6123 1705 234 0 0 0 chr3 116997115 116997141 -110527437 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 11751 214 48 19 chr3 116997141 116998885 -110525693 - L1MA4 LINE L1 -4777 1705 12 761 237 5 24 chr3 116999387 116999594 -110524984 - L1 LINE L1 -1954 4192 3990 189 0 0 0 chr3 116999980 117000001 -110524577 + (TG)n Simple_repeat Simple_repeat 2 22 0 2175 124 62 3 chr3 117000048 117000402 -110524176 + THE1C LTR MaLR 1 375 0 8771 146 25 64 chr3 117000402 117002040 -110522538 + THE1C-int LTR MaLR 1 1574 -6 2442 114 25 8 chr3 117002044 117002411 -110522167 + THE1C LTR MaLR 3 375 0 546 241 7 7 chr3 117002417 117002554 -110522024 + L1MA9 LINE L1 3991 4127 -2019 2058 259 27 6 chr3 117002564 117003202 -110521376 - L1 LINE L1 -2174 3972 3322 * 4544 211 17 22 chr3 117003192 117004761 -110519817 + L1MA9 LINE L1 4198 5752 -560 236 206 14 27 chr3 117004853 117004926 -110519652 + L1MA9 LINE L1 5777 5848 -464 489 175 0 0 chr3 117005088 117005168 -110519410 + AluS SINE Alu 224 303 -7 779 152 269 18 chr3 117005379 117005550 -110519028 + AluJb SINE Alu 81 294 -18 1277 186 40 8 chr3 117006351 117006603 -110517975 - AluJb SINE Alu -52 260 1 180 0 0 0 chr3 117007330 117007350 -110517228 + (CA)n Simple_repeat Simple_repeat 1 20 0 406 211 11 0 chr3 117007403 117007493 -110517085 + L1MA9 LINE L1 6182 6272 -40 29 28 0 0 chr3 117008663 117008699 -110515879 + AT_rich Low_complexity Low_complexity 1 36 0 294 336 93 0 chr3 117009947 117010054 -110514524 - MER5A DNA MER1_type -5 184 68 632 296 140 37 chr3 117011301 117011652 -110512926 + L2 LINE L2 104 490 -2824 424 292 72 25 chr3 117011653 117011889 -110512689 + L2 LINE L2 1858 2104 -1210 360 293 126 37 chr3 117011926 117012117 -110512461 + L2 LINE L2 2452 2659 -655 21 71 0 0 chr3 117013087 117013129 -110511449 + AT_rich Low_complexity Low_complexity 1 42 0 275 0 29 0 chr3 117014375 117014410 -110510168 + (TA)n Simple_repeat Simple_repeat 1 36 0 25 51 0 0 chr3 117014708 117014747 -110509831 + AT_rich Low_complexity Low_complexity 1 39 0 186 103 0 0 chr3 117014990 117015019 -110509559 + (TTAA)n Simple_repeat Simple_repeat 4 32 0 333 345 48 40 chr3 117016719 117017121 -110507457 - L2 LINE L2 -202 3070 2660 2032 140 3 0 chr3 117018662 117018962 -110505616 - AluSp SINE Alu -12 301 1 1101 244 76 19 chr3 117019012 117019381 -110505197 - MLT1B LTR MaLR 0 390 1 313 359 22 22 chr3 117021387 117021568 -110503010 - MIR SINE MIR -45 217 37 25 0 0 0 chr3 117021589 117021614 -110502964 + AT_rich Low_complexity Low_complexity 1 25 0 205 149 21 21 chr3 117021931 117021978 -110502600 + A-rich Low_complexity Low_complexity 3 49 0 381 274 8 24 chr3 117023077 117023201 -110501377 + GA-rich Low_complexity Low_complexity 3 124 0 298 162 0 18 chr3 117023228 117023308 -110501270 + L1MEc LINE L1 1378 1419 -5440 28 48 0 0 chr3 117023668 117023710 -110500868 + AT_rich Low_complexity Low_complexity 1 42 0 356 388 21 18 chr3 117024210 117024491 -110500087 - ERVL LTR ERVL -4633 1131 850 21 0 0 0 chr3 117024924 117024945 -110499633 + AT_rich Low_complexity Low_complexity 1 21 0 1125 187 179 11 chr3 117025066 117025388 -110499190 - L1MA3 LINE L1 0 6305 5924 2062 159 45 13 chr3 117027147 117027524 -110497054 + MLT1B LTR MaLR 2 390 0 300 172 0 0 chr3 117027829 117027887 -110496691 + CT-rich Low_complexity Low_complexity 2 59 0 336 48 0 0 chr3 117027887 117027929 -110496649 + (CA)n Simple_repeat Simple_repeat 1 42 0 262 271 107 41 chr3 117027942 117028064 -110496514 + MER69A DNA AcHobo 2 131 -46 23 0 0 0 chr3 117030755 117030778 -110493800 + AT_rich Low_complexity Low_complexity 1 23 0 893 239 179 53 chr3 117030962 117031393 -110493185 + MLT1D LTR MaLR 21 505 0 311 299 112 86 chr3 117033621 117033782 -110490796 - L3 LINE CR1 -10 1567 1394 1807 130 0 78 chr3 117033782 117034133 -110490445 - AluSx SINE Alu 0 327 1 311 299 112 86 chr3 117034133 117034238 -110490340 - L3 LINE CR1 -183 1394 1293 3577 204 8 5 chr3 117034477 117035242 -110489336 + L1MB3 LINE L1 5417 6183 0 233 248 20 50 chr3 117036357 117036458 -110488120 + T-rich Low_complexity Low_complexity 5 102 0 1010 246 208 18 chr3 117036848 117037185 -110487393 - MLT1E2 LTR MaLR 0 626 226 207 0 0 0 chr3 117037238 117037261 -110487317 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1796 120 0 0 chr3 117037264 117037505 -110487073 - AluY SINE Alu -24 287 47 2099 134 3 6 chr3 117037583 117037896 -110486682 - AluSx SINE Alu 0 312 1 306 339 99 39 chr3 117038034 117038367 -110486211 - LTR33 LTR ERVL -99 422 70 867 226 17 6 chr3 117038470 117038651 -110485927 - MER58A DNA MER1_type 0 224 42 614 287 168 19 chr3 117038835 117039156 -110485422 + MLT1J LTR MaLR 99 467 -44 21 57 0 0 chr3 117039486 117039521 -110485057 + AT_rich Low_complexity Low_complexity 1 35 0 748 179 94 80 chr3 117039950 117040174 -110484404 + AluJo SINE Alu 2 228 -84 196 51 26 26 chr3 117040177 117040216 -110484362 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 247 328 26 9 chr3 117041858 117041974 -110482604 - L2 LINE L2 -8 3305 3188 22 35 0 0 chr3 117044210 117044239 -110480339 + AT_rich Low_complexity Low_complexity 1 29 0 258 250 0 0 chr3 117044595 117044647 -110479931 + MER3 DNA MER1_type 39 90 -119 231 103 0 0 chr3 117044647 117044686 -110479892 + (TAAAA)n Simple_repeat Simple_repeat 1 39 0 249 33 0 0 chr3 117044744 117044774 -110479804 + (CA)n Simple_repeat Simple_repeat 2 31 0 242 247 34 51 chr3 117044882 117045006 -110479572 + MLT1L LTR MaLR 455 552 -36 23 33 0 0 chr3 117045666 117045696 -110478882 + AT_rich Low_complexity Low_complexity 1 30 0 2038 139 0 7 chr3 117045712 117046006 -110478572 - AluSx SINE Alu -20 292 1 1719 246 102 16 chr3 117046371 117046822 -110477756 + MLT1E LTR MaLR 101 590 -3 195 242 0 0 chr3 117048615 117048677 -110475901 + (TA)n Simple_repeat Simple_repeat 1 62 0 212 122 24 0 chr3 117048679 117048720 -110475858 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 315 183 0 0 chr3 117050265 117050347 -110474231 + (TA)n Simple_repeat Simple_repeat 1 82 0 257 284 0 0 chr3 117050369 117050457 -110474121 + (TA)n Simple_repeat Simple_repeat 1 88 0 229 264 22 33 chr3 117050464 117050555 -110474023 + L1MC4 LINE L1 6614 6703 -1339 237 83 0 0 chr3 117051511 117051547 -110473031 + (CA)n Simple_repeat Simple_repeat 1 36 0 24 0 0 0 chr3 117052414 117052438 -110472140 + AT_rich Low_complexity Low_complexity 1 24 0 274 295 35 55 chr3 117052494 117052748 -110471830 + L1M4 LINE L1 3878 4126 -2020 461 184 19 0 chr3 117053099 117053202 -110471376 + L1MA7 LINE L1 6177 6281 -10 276 256 11 0 chr3 117053829 117053919 -110470659 + L1ME3A LINE L1 5851 5941 -229 234 0 0 0 chr3 117054198 117054224 -110470354 + (TTA)n Simple_repeat Simple_repeat 3 28 0 210 118 0 0 chr3 117055426 117055460 -110469118 + (CA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr3 117055462 117055486 -110469092 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr3 117055781 117055803 -110468775 + AT_rich Low_complexity Low_complexity 1 22 0 2316 176 89 106 chr3 117056414 117056953 -110467625 - L1MA9 LINE L1 0 6312 5786 333 47 0 0 chr3 117056953 117056996 -110467582 + (CA)n Simple_repeat Simple_repeat 2 44 0 2316 176 89 106 chr3 117056996 117057162 -110467416 - L1MA9 LINE L1 -526 5786 5619 22 0 0 0 chr3 117057721 117057743 -110466835 + AT_rich Low_complexity Low_complexity 1 22 0 34 55 0 0 chr3 117058039 117058094 -110466484 + AT_rich Low_complexity Low_complexity 1 55 0 39 0 0 0 chr3 117058606 117058645 -110465933 + AT_rich Low_complexity Low_complexity 1 39 0 29 28 0 0 chr3 117058979 117059015 -110465563 + AT_rich Low_complexity Low_complexity 1 36 0 257 344 0 16 chr3 117059267 117059395 -110465183 + GA-rich Low_complexity Low_complexity 2 127 0 2105 138 3 0 chr3 117059784 117060095 -110464483 - AluSq SINE Alu -1 312 1 1979 143 98 15 chr3 117060514 117060850 -110463728 - THE1B LTR MaLR 0 364 1 10580 121 16 1 chr3 117060850 117062391 -110462187 - THE1B-int LTR MaLR 0 1580 17 1989 118 0 13 chr3 117062391 117062705 -110461873 + HERVL-A2 LTR ERVL 5345 5654 0 2443 136 42 50 chr3 117062705 117063162 -110461416 + MLT2A2 LTR ERVL 1 453 0 5612 58 1 4 chr3 117063509 117064220 -110460358 + L1PA7 LINE L1 5445 6153 -1 21 0 0 0 chr3 117064554 117064575 -110460003 + AT_rich Low_complexity Low_complexity 1 21 0 1429 209 91 28 chr3 117064670 117064867 -110459711 + MLT1B LTR MaLR 4 187 -203 201 39 0 0 chr3 117064867 117064893 -110459685 + (GA)n Simple_repeat Simple_repeat 1 26 0 1429 209 91 28 chr3 117064893 117065059 -110459519 + MLT1B LTR MaLR 187 390 0 228 301 98 24 chr3 117065168 117065291 -110459287 + MER5A DNA MER1_type 53 184 -5 542 286 56 0 chr3 117065631 117065792 -110458786 + MER45A DNA AcHobo 9 178 0 509 270 61 14 chr3 117066512 117066660 -110457918 - MIR SINE MIR 0 262 108 374 190 110 20 chr3 117067844 117067944 -110456634 - L2 LINE L2 -2 3311 3203 242 267 40 50 chr3 117067961 117068062 -110456516 + MER117 DNA MER1_type 45 144 -53 631 324 40 31 chr3 117068588 117068813 -110455765 - MIR SINE MIR 0 262 36 574 288 190 21 chr3 117068980 117069306 -110455272 - L2 LINE L2 0 3313 2933 2162 243 73 18 chr3 117071444 117072058 -110452520 + MER82 DNA MER2_type 6 653 0 243 0 0 0 chr3 117072806 117072833 -110451745 + (TCTA)n Simple_repeat Simple_repeat 3 29 0 190 310 18 106 chr3 117074716 117074771 -110449807 - MIR SINE MIR -90 118 60 414 0 0 0 chr3 117074771 117074817 -110449761 + (TA)n Simple_repeat Simple_repeat 1 46 0 190 310 18 106 chr3 117074817 117074828 -110449750 - MIR SINE MIR -148 60 50 342 45 0 0 chr3 117074828 117074872 -110449706 + (CA)n Simple_repeat Simple_repeat 1 44 0 190 310 18 106 chr3 117074872 117074917 -110449661 - MIR SINE MIR -158 50 16 225 0 0 0 chr3 117075949 117075974 -110448604 + (CA)n Simple_repeat Simple_repeat 1 25 0 1464 205 4 0 chr3 117078516 117078824 -110445754 + AluJo SINE Alu 6 314 0 195 42 0 0 chr3 117078826 117078850 -110445728 + (CAT)n Simple_repeat Simple_repeat 3 26 0 273 57 0 0 chr3 117079575 117079610 -110444968 + (CAAAAA)n Simple_repeat Simple_repeat 3 37 0 21 0 0 0 chr3 117080154 117080175 -110444403 + AT_rich Low_complexity Low_complexity 1 21 0 234 91 0 0 chr3 117080384 117080417 -110444161 + (CATATA)n Simple_repeat Simple_repeat 2 34 0 789 221 10 2 chr3 117080545 117080845 -110443733 + MLT1A1 LTR MaLR 1 364 -1 6364 30 0 7 chr3 117080951 117081713 -110442865 - L1PA3 LINE L1 0 6155 5399 4943 34 6 2 chr3 117081712 117082341 -110442237 + L1M LINE L1 4750 5378 -788 * 25 0 0 0 chr3 117082389 117082414 -110442164 + AT_rich Low_complexity Low_complexity 1 25 0 219 338 25 0 chr3 117084112 117084192 -110440386 + L2 LINE L2 3223 3304 -9 250 181 125 0 chr3 117084700 117084772 -110439806 + L1MD1 LINE L1 3595 3675 -2471 644 129 6 37 chr3 117084789 117084952 -110439626 + (GAAA)n Simple_repeat Simple_repeat 3 160 0 183 246 0 0 chr3 117084938 117084995 -110439583 + GA-rich Low_complexity Low_complexity 4 60 0 * 888 259 85 25 chr3 117085007 117085370 -110439208 + L1MD1 LINE L1 3704 4088 -2058 * 2263 199 67 15 chr3 117085356 117086318 -110438260 + L1M2 LINE L1 4700 5714 -577 1093 166 9 42 chr3 117086314 117086531 -110438047 - L1MA9 LINE L1 -308 7025 6816 * 321 26 0 0 chr3 117086546 117086584 -110437994 + (TG)n Simple_repeat Simple_repeat 1 38 0 2250 181 23 28 chr3 117086584 117086885 -110437693 - Tigger2a DNA MER2_type -2280 428 128 954 131 0 6 chr3 117086885 117087045 -110437533 - L1PA10 LINE L1 0 6168 6010 2250 181 23 28 chr3 117087045 117087173 -110437405 - Tigger2a DNA MER2_type -2580 128 1 488 165 33 0 chr3 117087200 117087291 -110437287 - L1MA9 LINE L1 -1444 5723 5630 * 3191 284 50 36 chr3 117087290 117088619 -110435959 - L1MA9 LINE L1 -2759 4408 3099 2329 104 14 14 chr3 117088619 117088974 -110435604 - THE1A LTR MaLR 0 355 1 10374 119 19 10 chr3 117088974 117090416 -110434162 - THE1A-int LTR MaLR 0 1580 121 369 0 0 0 chr3 117090416 117090457 -110434121 + (TG)n Simple_repeat Simple_repeat 2 42 0 10374 119 19 10 chr3 117090457 117090580 -110433998 - THE1A-int LTR MaLR -1459 121 1 2210 120 14 8 chr3 117090582 117090933 -110433645 - THE1A LTR MaLR -2 353 1 3191 284 50 36 chr3 117090933 117092633 -110431945 - L1MA9 LINE L1 -4068 3099 1619 246 224 35 0 chr3 117093476 117093534 -110431044 - L1MA9 LINE L1 -6221 877 818 1321 210 30 20 chr3 117093599 117093899 -110430679 + AluJo SINE Alu 1 303 -9 1004 130 12 0 chr3 117093921 117094090 -110430488 + GA-rich Low_complexity Low_complexity 3 173 0 1975 242 119 19 chr3 117094122 117095307 -110429271 + L1MD1 LINE L1 4407 5731 -628 599 188 0 0 chr3 117095363 117095459 -110429119 - FRAM SINE Alu -30 146 51 390 198 54 27 chr3 117095507 117095618 -110428960 + L1MD1 LINE L1 5767 5880 -362 25 31 0 0 chr3 117095794 117095826 -110428752 + AT_rich Low_complexity Low_complexity 1 32 0 311 367 0 0 chr3 117095826 117095935 -110428643 + MER5A DNA MER1_type 1 109 -80 1430 206 85 60 chr3 117096010 117096446 -110428132 + L1MB1 LINE L1 5338 5784 -387 213 39 0 0 chr3 117096449 117096475 -110428103 + (TG)n Simple_repeat Simple_repeat 1 26 0 189 147 0 0 chr3 117096492 117096526 -110428052 + (TA)n Simple_repeat Simple_repeat 2 35 0 434 204 21 0 chr3 117096530 117096623 -110427955 + L1MB1 LINE L1 5912 6006 -162 1835 172 78 0 chr3 117096654 117097015 -110427563 + L1MB2 LINE L1 5781 6169 -2 21 71 0 0 chr3 117097173 117097215 -110427363 + AT_rich Low_complexity Low_complexity 1 42 0 37 18 0 18 chr3 117097352 117097371 -110427207 + AT_rich Low_complexity Low_complexity 1 19 -35 2046 60 3 50 chr3 117097371 117097670 -110426908 + AluY SINE Alu 1 285 -26 37 18 0 18 chr3 117097670 117097705 -110426873 + AT_rich Low_complexity Low_complexity 19 54 0 202 360 13 0 chr3 117097801 117097876 -110426702 + (CA)n Simple_repeat Simple_repeat 2 77 0 1025 201 71 120 chr3 117097878 117098246 -110426332 + MLT1A1 LTR MaLR 13 362 -3 3660 87 200 5 chr3 117098840 117099416 -110425162 + LTR12 LTR ERV1 1 688 0 25 0 0 0 chr3 117099839 117099864 -110424714 + AT_rich Low_complexity Low_complexity 1 25 0 372 262 10 29 chr3 117100033 117100136 -110424442 + MER5A DNA MER1_type 10 110 -79 502 342 106 27 chr3 117100517 117100991 -110423587 - ERVL LTR ERVL -1407 4357 3847 1475 205 37 26 chr3 117101217 117101571 -110423007 - MLT1A1 LTR MaLR -9 387 1 1267 221 103 19 chr3 117101625 117101946 -110422632 + MLT1D LTR MaLR 115 462 -43 706 350 38 9 chr3 117101968 117102416 -110422162 - ERVL LTR ERVL -2021 3633 3173 598 262 76 9 chr3 117104052 117104262 -110420316 + L1ME3A LINE L1 5353 5576 -588 1819 180 5 73 chr3 117104326 117104738 -110419840 - MLT1B LTR MaLR 0 390 7 537 272 101 41 chr3 117104744 117105218 -110419360 + L1ME3A LINE L1 5647 6161 -9 191 322 68 75 chr3 117105376 117105522 -110419056 + MIR3 SINE MIR 59 203 -5 2683 20 0 0 chr3 117105558 117105862 -110418716 - AluYa5 SINE Alu -7 304 1 31 44 0 0 chr3 117105982 117106027 -110418551 + AT_rich Low_complexity Low_complexity 1 45 0 374 319 18 35 chr3 117106421 117106590 -110417988 - L2 LINE L2 -2 3311 3146 1168 296 112 30 chr3 117108000 117108845 -110415733 - L2 LINE L2 -2 3311 2381 2021 132 7 0 chr3 117109180 117109484 -110415094 + AluSc SINE Alu 1 306 -3 2317 98 0 16 chr3 117110616 117110932 -110413646 - AluSq SINE Alu -2 311 1 25 0 0 0 chr3 117111019 117111044 -110413534 + AT_rich Low_complexity Low_complexity 1 25 0 1821 158 150 5 chr3 117111484 117111858 -110412720 - MSTA LTR MaLR 0 428 1 271 114 0 0 chr3 117112218 117112262 -110412316 - Alu SINE Alu -256 44 1 1393 186 7 46 chr3 117112335 117112647 -110411931 + AluJb SINE Alu 9 309 0 271 245 230 14 chr3 117113186 117113325 -110411253 + MIR SINE MIR 34 202 -60 21 0 0 0 chr3 117113382 117113403 -110411175 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 117113608 117113629 -110410949 + AT_rich Low_complexity Low_complexity 1 21 0 224 292 14 0 chr3 117113829 117113901 -110410677 + (CATA)n Simple_repeat Simple_repeat 4 76 0 40 49 0 0 chr3 117114103 117114164 -110410414 + AT_rich Low_complexity Low_complexity 1 61 0 324 0 0 0 chr3 117114363 117114399 -110410179 + (TTA)n Simple_repeat Simple_repeat 3 38 0 3341 39 7 5 chr3 117114399 117114809 -110409769 - L1PA4 LINE L1 -18 6137 5727 309 319 35 35 chr3 117115446 117115590 -110408988 - L2 LINE L2 -985 2329 2186 1897 176 20 78 chr3 117115653 117116061 -110408517 - MLT2B2 LTR ERVL -130 385 2 11033 188 21 15 chr3 117116062 117118178 -110406400 - ERVL-B2 LTR ERVL -7 5757 3629 195 69 0 0 chr3 117118831 117118860 -110405718 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1690 151 28 69 chr3 117119386 117119610 -110404968 - THE1C LTR MaLR 0 375 172 2427 85 0 0 chr3 117119610 117119917 -110404661 + AluSg SINE Alu 1 307 -3 1690 151 28 69 chr3 117119917 117120083 -110404495 - THE1C LTR MaLR -203 172 1 454 327 77 41 chr3 117120275 117120844 -110403734 - L1MEd LINE L1 -846 1644 963 240 278 44 11 chr3 117120890 117120980 -110403598 + MIR SINE MIR 89 181 -81 2260 101 3 0 chr3 117121418 117121715 -110402863 + AluSg SINE Alu 1 298 -12 28 0 0 0 chr3 117122652 117122680 -110401898 + AT_rich Low_complexity Low_complexity 1 28 0 598 228 16 0 chr3 117122771 117122898 -110401680 + FLAM_C SINE Alu 5 133 0 206 227 0 0 chr3 117122955 117122999 -110401579 + CT-rich Low_complexity Low_complexity 1 44 0 5845 23 3 0 chr3 117123044 117123732 -110400846 + L1PA3 LINE L1 5463 6152 -3 619 329 80 23 chr3 117123801 117124279 -110400299 + L1MC/D LINE L1 5255 5759 -2049 336 83 0 0 chr3 117124286 117124334 -110400244 + (TA)n Simple_repeat Simple_repeat 1 48 0 606 238 89 6 chr3 117124383 117124551 -110400027 + MER58A DNA MER1_type 26 207 -17 1056 131 114 6 chr3 117124647 117124887 -110399691 + Tigger1 DNA MER2_type 26 328 -2090 25 31 0 0 chr3 117125582 117125614 -110398964 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr3 117126018 117126044 -110398534 + AT_rich Low_complexity Low_complexity 1 26 0 1416 244 42 32 chr3 117126178 117126580 -110397998 + MLT1C LTR MaLR 6 411 -56 1943 126 25 0 chr3 117126616 117126893 -110397685 - AluSx SINE Alu -28 284 1 243 0 0 0 chr3 117126929 117126956 -110397622 + (T)n Simple_repeat Simple_repeat 1 27 0 319 322 45 36 chr3 117127200 117127535 -110397043 + L1MD2 LINE L1 3892 4229 -1917 12870 157 56 3 chr3 117128030 117129785 -110394793 - Tigger1 DNA MER2_type -5 2413 752 1933 124 4 0 chr3 117129785 117130060 -110394518 + AluSg SINE Alu 1 276 -34 333 0 0 0 chr3 117130060 117130097 -110394481 + (TC)n Simple_repeat Simple_repeat 2 38 0 216 0 0 0 chr3 117130096 117130120 -110394458 + (TA)n Simple_repeat Simple_repeat 1 24 0 12870 157 56 3 chr3 117130097 117130119 -110394459 - Tigger1 DNA MER2_type -1666 752 733 315 0 0 0 chr3 117130119 117130154 -110394424 + (GA)n Simple_repeat Simple_repeat 2 36 0 12870 157 56 3 chr3 117130154 117130507 -110394071 - Tigger1 DNA MER2_type -1685 733 400 285 29 0 0 chr3 117130507 117130541 -110394037 + (TAA)n Simple_repeat Simple_repeat 3 36 0 12870 157 56 3 chr3 117130541 117130722 -110393856 - Tigger1 DNA MER2_type -2018 400 1 312 363 24 12 chr3 117130722 117130890 -110393688 + L1MD2 LINE L1 4752 4921 -1225 326 331 135 71 chr3 117131179 117131392 -110393186 + L1MD2 LINE L1 5259 5457 -705 6657 85 6 0 chr3 117131392 117132384 -110392194 + L1PA8 LINE L1 5172 6168 -4 326 331 135 71 chr3 117132384 117132567 -110392011 + L1MD2 LINE L1 5457 5672 -490 21 0 0 0 chr3 117132578 117132599 -110391979 + AT_rich Low_complexity Low_complexity 1 21 0 254 191 64 0 chr3 117132619 117132666 -110391912 - Tigger1 DNA MER2_type -1686 732 683 30 59 0 0 chr3 117132835 117132886 -110391692 + AT_rich Low_complexity Low_complexity 1 51 0 32 43 0 0 chr3 117132991 117133037 -110391541 + AT_rich Low_complexity Low_complexity 1 46 0 2137 106 0 29 chr3 117133488 117133800 -110390778 + AluSq SINE Alu 1 303 -10 2400 25 0 0 chr3 117136999 117137274 -110387304 + AluY SINE Alu 27 301 -10 21 36 0 0 chr3 117137635 117137663 -110386915 + AT_rich Low_complexity Low_complexity 1 28 0 3043 152 37 58 chr3 117138542 117139062 -110385516 + L1PA3 LINE L1 5321 5822 -333 225 170 0 0 chr3 117139062 117139109 -110385469 - LTR66 LTR ERVL -167 443 397 3043 152 37 58 chr3 117139109 117139435 -110385143 + L1PA3 LINE L1 5822 6153 -2 1165 107 45 0 chr3 117139435 117139613 -110384965 + L1PB1 LINE L1 5959 6144 -7 258 286 92 17 chr3 117140160 117140279 -110384299 - L2 LINE L2 -3 3310 3183 208 268 36 0 chr3 117141801 117141857 -110382721 + MER5C DNA MER1_type 267 324 0 3558 256 55 42 chr3 117142568 117143791 -110380787 + L1M4 LINE L1 2650 3902 -2244 1523 134 0 22 chr3 117143791 117144023 -110380555 - AluSg SINE Alu -78 232 6 3558 256 55 42 chr3 117144023 117144438 -110380140 + L1M4 LINE L1 3902 4310 -1836 1511 224 117 19 chr3 117144442 117144870 -110379708 + L1MD2 LINE L1 5869 6338 -21 2025 221 56 14 chr3 117145847 117146331 -110378247 - MLT1D LTR MaLR 0 505 2 29 0 0 0 chr3 117146646 117146675 -110377903 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr3 117147879 117147899 -110376679 + (TAAA)n Simple_repeat Simple_repeat 4 23 0 26 30 0 0 chr3 117148421 117148454 -110376124 + AT_rich Low_complexity Low_complexity 1 33 0 301 227 0 21 chr3 117148601 117148698 -110375880 + CT-rich Low_complexity Low_complexity 5 99 0 1922 135 31 0 chr3 117148890 117149178 -110375400 + AluSx SINE Alu 5 301 -11 242 0 61 0 chr3 117149455 117149488 -110375090 + (TTTA)n Simple_repeat Simple_repeat 4 38 0 1885 125 21 4 chr3 117149502 117149783 -110374795 - AluSg SINE Alu -22 288 3 290 252 9 9 chr3 117150325 117150432 -110374146 + (TA)n Simple_repeat Simple_repeat 2 108 0 297 0 0 0 chr3 117150432 117150465 -110374113 + (TG)n Simple_repeat Simple_repeat 2 34 0 249 286 26 0 chr3 117150779 117150856 -110373722 + GA-rich Low_complexity Low_complexity 3 81 0 21 57 0 0 chr3 117151101 117151136 -110373442 + AT_rich Low_complexity Low_complexity 1 35 0 223 215 51 40 chr3 117151358 117151535 -110373043 + (TA)n Simple_repeat Simple_repeat 1 179 0 * 282 155 39 29 chr3 117151516 117151619 -110372959 + (TTATA)n Simple_repeat Simple_repeat 1 104 0 309 312 48 8 chr3 117152010 117152135 -110372443 - MARNA DNA Mariner -372 214 85 2456 63 0 0 chr3 117152756 117153058 -110371520 + AluY SINE Alu 7 308 -3 22 35 0 0 chr3 117155247 117155276 -110369302 + AT_rich Low_complexity Low_complexity 1 29 0 958 244 24 83 chr3 117155338 117155523 -110369055 - L1MC5 LINE L1 -753 7208 7014 1432 173 61 30 chr3 117155523 117155818 -110368760 - AluJb SINE Alu -8 304 1 958 244 24 83 chr3 117155818 117156135 -110368443 - L1MC5 LINE L1 -947 7014 6736 245 303 77 109 chr3 117156141 117156481 -110368097 + L2 LINE L2 2208 2536 -778 297 319 142 56 chr3 117156891 117157179 -110367399 + LTR16C LTR ERVL 128 440 -51 1097 229 161 26 chr3 117157544 117157893 -110366685 - MSTD LTR MaLR 0 396 1 334 253 61 20 chr3 117158290 117158389 -110366189 - L2 LINE L2 -19 3294 3192 1876 179 3 34 chr3 117160470 117160827 -110363751 + MER7A DNA MER2_type 2 345 -1 513 287 70 0 chr3 117161160 117161317 -110363261 - MLT1J LTR MaLR -341 170 3 219 69 0 0 chr3 117161340 117161369 -110363209 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 290 295 134 51 chr3 117162024 117162278 -110362300 + L2 LINE L2 1421 1695 -1619 1161 264 64 7 chr3 117162454 117162845 -110361733 - L1ME1 LINE L1 -167 5999 5628 1835 256 91 32 chr3 117162845 117163662 -110360916 - L1ME1 LINE L1 -1772 4374 3510 589 223 50 25 chr3 117163685 117163871 -110360707 - L1M4 LINE L1 -685 5423 5234 180 77 0 0 chr3 117163984 117164010 -110360568 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1701 306 49 29 chr3 117164011 117165203 -110359375 - L1M4 LINE L1 -1205 4875 3446 752 113 11 43 chr3 117165459 117165644 -110358934 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 256 74 0 56 chr3 117165655 117165709 -110358869 + (TTCC)n Simple_repeat Simple_repeat 1 51 0 335 336 123 24 chr3 117166311 117166564 -110358014 - L1M4 LINE L1 -4982 1088 811 198 71 0 0 chr3 117166753 117166781 -110357797 + (CAA)n Simple_repeat Simple_repeat 2 29 0 252 0 0 0 chr3 117169280 117169308 -110355270 + (TG)n Simple_repeat Simple_repeat 2 29 0 253 278 14 0 chr3 117169538 117169610 -110354968 + GA-rich Low_complexity Low_complexity 6 78 0 198 316 180 0 chr3 117169719 117169858 -110354720 + MIR SINE MIR 45 208 -54 3592 217 33 58 chr3 117170190 117170827 -110353751 - L1MD1 LINE L1 0 6636 5984 4861 153 39 15 chr3 117170827 117171709 -110352869 - MER4D LTR ERV1 0 903 1 3592 217 33 58 chr3 117171709 117172505 -110352073 - L1MD1 LINE L1 -652 5984 5246 429 180 32 48 chr3 117172539 117172669 -110351909 - L1MD1 LINE L1 -3896 2644 2514 237 133 50 33 chr3 117172691 117172751 -110351827 - L1MD1 LINE L1 -3991 2549 2489 5964 261 82 47 chr3 117172771 117174796 -110349782 - L1MD1 LINE L1 -4020 2520 567 180 0 0 0 chr3 117174796 117174816 -110349762 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 5964 261 82 47 chr3 117174816 117174937 -110349641 - L1MD1 LINE L1 -5973 567 452 222 37 0 0 chr3 117174937 117174964 -110349614 + (TTG)n Simple_repeat Simple_repeat 1 27 0 5964 261 82 47 chr3 117174964 117175227 -110349351 - L1MD1 LINE L1 -6088 452 26 4382 197 39 5 chr3 117175367 117176557 -110348021 + L1MA8 LINE L1 4983 6206 -85 29 28 0 0 chr3 117176779 117176815 -110347763 + AT_rich Low_complexity Low_complexity 1 36 0 1525 149 71 0 chr3 117177270 117177551 -110347027 + AluSp SINE Alu 3 303 -10 330 247 0 103 chr3 117179343 117179489 -110345089 + MER94 DNA DNA 2 132 -2 23 33 0 0 chr3 117179849 117179879 -110344699 + AT_rich Low_complexity Low_complexity 1 30 0 876 284 59 42 chr3 117179950 117180359 -110344219 + MER47B DNA MER2_type 1 416 -2 274 321 179 7 chr3 117180955 117181095 -110343483 + L2 LINE L2 3108 3271 -1 207 0 0 0 chr3 117181635 117181658 -110342920 + (CA)n Simple_repeat Simple_repeat 1 23 0 289 196 84 3 chr3 117181734 117181827 -110342751 + L1ME1 LINE L1 6067 6164 0 1067 290 140 49 chr3 117181842 117182469 -110342109 + L2 LINE L2 2260 2943 -371 206 139 23 23 chr3 117182498 117182541 -110342037 + L2 LINE L2 3271 3313 0 551 197 45 0 chr3 117183196 117183328 -110341250 - LTR37A LTR ERV1 -3 423 286 1160 200 97 62 chr3 117184568 117184858 -110339720 - AluJb SINE Alu -2 300 1 25 51 0 0 chr3 117185368 117185407 -110339171 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr3 117186659 117186688 -110337890 + AT_rich Low_complexity Low_complexity 1 29 0 248 250 17 0 chr3 117187850 117187910 -110336668 + GA-rich Low_complexity Low_complexity 3 63 0 22 0 0 0 chr3 117188496 117188518 -110336060 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr3 117189425 117189449 -110335129 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2192 110 3 0 chr3 117189462 117189763 -110334815 - AluSx SINE Alu -10 302 1 355 288 18 18 chr3 117189821 117189932 -110334646 + MIR SINE MIR 152 262 0 360 365 31 51 chr3 117190047 117190434 -110334144 + L2 LINE L2 2695 3069 -244 5469 247 44 36 chr3 117190483 117192741 -110331837 + L1MC/D LINE L1 3256 5527 -745 1957 212 37 27 chr3 117192882 117193598 -110330980 + L1MC1 LINE L1 4957 5672 -661 1286 204 47 0 chr3 117193586 117193861 -110330717 + L1MC1 LINE L1 6037 6324 -9 * 270 305 59 93 chr3 117193904 117194140 -110330438 + L2 LINE L2 3086 3313 0 297 349 118 5 chr3 117194249 117194444 -110330134 - MIR SINE MIR -31 231 15 396 108 15 0 chr3 117194744 117194809 -110329769 + L1MA9 LINE L1 6247 6312 0 24 0 0 0 chr3 117194809 117194833 -110329745 + AT_rich Low_complexity Low_complexity 1 24 0 446 136 12 0 chr3 117194858 117194939 -110329639 + C-rich Low_complexity Low_complexity 3 84 0 264 185 0 0 chr3 117194926 117194980 -110329598 + CT-rich Low_complexity Low_complexity 5 58 0 * 379 265 41 27 chr3 117196121 117196268 -110328310 - MER104 DNA Tc2 -6 174 26 548 58 0 0 chr3 117196271 117196340 -110328238 - L1P LINE L1 -756 5375 5307 4867 88 6 3 chr3 117196340 117197005 -110327573 + L1PA8 LINE L1 5498 6168 -4 186 43 0 0 chr3 117197005 117197028 -110327550 + (TA)n Simple_repeat Simple_repeat 2 24 0 31 76 0 0 chr3 117197411 117197477 -110327101 + AT_rich Low_complexity Low_complexity 1 66 0 28 0 0 0 chr3 117197601 117197629 -110326949 + AT_rich Low_complexity Low_complexity 1 28 0 204 159 23 0 chr3 117198524 117198568 -110326010 + (TA)n Simple_repeat Simple_repeat 1 45 0 7883 198 51 20 chr3 117199087 117201807 -110322771 + L1MA4 LINE L1 3489 6299 -1 24 0 0 0 chr3 117202064 117202088 -110322490 + AT_rich Low_complexity Low_complexity 1 24 0 1878 167 74 115 chr3 117202123 117202811 -110321767 - MER4A LTR ERV1 -4 660 1 186 43 0 0 chr3 117203119 117203142 -110321436 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 23 33 0 0 chr3 117203485 117203515 -110321063 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr3 117204222 117204259 -110320319 + AT_rich Low_complexity Low_complexity 1 37 0 237 328 0 0 chr3 117204647 117204705 -110319873 + Charlie1 DNA MER1_type 2 59 -2702 28 48 0 0 chr3 117204705 117204747 -110319831 + AT_rich Low_complexity Low_complexity 1 42 0 2004 220 70 11 chr3 117204748 117205375 -110319203 + Charlie1 DNA MER1_type 2094 2757 -4 472 293 53 7 chr3 117205378 117205528 -110319050 + MIR SINE MIR 8 164 -98 2211 193 10 80 chr3 117205561 117206048 -110318530 + MLT2B2 LTR ERVL 1 453 -62 781 138 23 6 chr3 117206061 117206235 -110318343 + (TCTA)n Simple_repeat Simple_repeat 4 180 0 240 231 0 0 chr3 117206235 117206287 -110318291 + MLT2B2 LTR ERVL 503 554 0 1331 273 111 9 chr3 117206342 117207079 -110317499 + L1M4 LINE L1 3053 3864 -2282 854 233 63 63 chr3 117207174 117207474 -110317104 - L1M4 LINE L1 -1153 5491 5192 * 983 252 67 21 chr3 117207466 117207839 -110316739 - L1M4 LINE L1 -1663 4981 4592 3849 269 81 21 chr3 117208280 117210112 -110314466 - L1M4 LINE L1 -1989 4655 2714 2930 257 96 45 chr3 117210112 117210350 -110314228 - L1M4 LINE L1 -5331 1211 986 236 30 30 0 chr3 117210350 117210383 -110314195 + (TTTG)n Simple_repeat Simple_repeat 1 34 0 1839 154 19 19 chr3 117210387 117210699 -110313879 - AluSx SINE Alu 0 312 1 2930 257 96 45 chr3 117210699 117210863 -110313715 - L1M4 LINE L1 -5558 984 830 384 22 0 0 chr3 117210863 117210908 -110313670 + (TG)n Simple_repeat Simple_repeat 2 46 0 2930 257 96 45 chr3 117210908 117211625 -110312953 - L1M4 LINE L1 -5712 830 29 338 227 109 42 chr3 117211646 117211765 -110312813 - L1MEc LINE L1 -4128 2268 2142 345 353 57 29 chr3 117211776 117212020 -110312558 + L1ME3A LINE L1 5587 5837 -333 1061 264 44 33 chr3 117212327 117212784 -110311794 - LTR40a LTR ERVL 0 519 103 1550 169 36 26 chr3 117212784 117213086 -110311492 - AluJb SINE Alu -7 305 1 1061 264 44 33 chr3 117213086 117213191 -110311387 - LTR40a LTR ERVL -416 103 1 26 88 0 0 chr3 117213578 117213646 -110310932 + AT_rich Low_complexity Low_complexity 1 68 0 2092 135 0 6 chr3 117215223 117215535 -110309043 - AluSx SINE Alu -2 310 1 468 349 30 5 chr3 117216389 117216587 -110307991 + MIR SINE MIR 54 256 -6 372 290 0 9 chr3 117216722 117216829 -110307749 - MER5A DNA MER1_type -80 109 4 22 56 0 0 chr3 117217333 117217369 -110307209 + AT_rich Low_complexity Low_complexity 1 36 0 2531 42 0 3 chr3 117217664 117217972 -110306606 - AluY SINE Alu -4 307 1 279 259 172 26 chr3 117218129 117218245 -110306333 + L2 LINE L2 3181 3313 0 25 31 0 0 chr3 117218585 117218617 -110305961 + AT_rich Low_complexity Low_complexity 1 32 0 1788 141 38 19 chr3 117219827 117220195 -110304383 + L1MA1 LINE L1 5928 6302 0 339 25 0 0 chr3 117220445 117220485 -110304093 + (TA)n Simple_repeat Simple_repeat 1 40 0 1765 167 10 22 chr3 117220486 117220868 -110303710 - Tigger3(Golem) DNA MER2_type -4 3025 1 33 25 0 0 chr3 117220985 117221025 -110303553 + AT_rich Low_complexity Low_complexity 1 40 0 234 292 22 0 chr3 117221084 117221173 -110303405 - L1ME LINE L1 -331 5831 5741 2517 256 40 1 chr3 117221225 117221951 -110302627 + L1ME4a LINE L1 3332 4085 -2061 242 336 62 0 chr3 117221957 117222103 -110302475 + L1ME4a LINE L1 4960 5114 -1032 24 100 0 0 chr3 117222328 117222408 -110302170 + AT_rich Low_complexity Low_complexity 1 80 0 306 336 73 36 chr3 117223441 117223852 -110300726 + L1ME4a LINE L1 5320 5745 -2063 189 0 0 0 chr3 117224097 117224118 -110300460 + (TTTTTA)n Simple_repeat Simple_repeat 5 25 0 185 23 70 23 chr3 117224202 117224245 -110300333 + (TTA)n Simple_repeat Simple_repeat 1 45 0 842 334 76 7 chr3 117224263 117224697 -110299881 + LTR16B LTR ERVL 1 464 0 307 260 58 10 chr3 117224797 117224901 -110299677 + L1ME4a LINE L1 6012 6120 -1 305 233 14 0 chr3 117224915 117224988 -110299590 + L1MCa LINE L1 1995 2068 -4358 307 320 56 33 chr3 117225970 117226273 -110298305 + L1ME4a LINE L1 5532 5841 -280 3093 156 29 4 chr3 117226326 117226872 -110297706 - L1PA16 LINE L1 -190 5976 5417 362 215 13 0 chr3 117226875 117226954 -110297624 + L1 LINE L1 4520 4599 -1547 1920 189 133 0 chr3 117226954 117227330 -110297248 + MSTB LTR MaLR 1 426 0 880 192 56 0 chr3 117227330 117227528 -110297050 + MSTB-int LTR MaLR 1 209 -1442 5054 203 13 13 chr3 117227650 117228638 -110295940 + MSTB-int LTR MaLR 664 1651 0 1724 205 118 0 chr3 117228638 117229018 -110295560 + MSTB LTR MaLR 1 425 -1 863 131 35 7 chr3 117229024 117229169 -110295409 - L1P4 LINE L1 -606 5560 5412 * 2360 244 10 0 chr3 117229162 117229741 -110294837 + L1MA4 LINE L1 4514 5098 -1048 250 236 100 9 chr3 117229975 117230085 -110294493 + L1ME4a LINE L1 5808 5927 -194 22 35 0 0 chr3 117230216 117230245 -110294333 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr3 117230280 117230310 -110294268 + AT_rich Low_complexity Low_complexity 1 30 0 27 0 0 0 chr3 117230333 117230360 -110294218 + AT_rich Low_complexity Low_complexity 1 27 0 895 200 36 45 chr3 117231110 117231330 -110293248 - MER20 DNA MER1_type -1 218 1 197 330 165 0 chr3 117231388 117231479 -110293099 + MIR SINE MIR 46 151 -111 2544 191 9 28 chr3 117233434 117233962 -110290616 + MLT2B1 LTR ERVL 3 520 0 215 327 113 47 chr3 117234001 117234276 -110290302 + L2 LINE L2 1258 1550 -1764 23 0 0 0 chr3 117234908 117234931 -110289647 + AT_rich Low_complexity Low_complexity 1 23 0 32 43 0 0 chr3 117235378 117235424 -110289154 + AT_rich Low_complexity Low_complexity 1 46 0 204 225 0 0 chr3 117235500 117235540 -110289038 + (TATATG)n Simple_repeat Simple_repeat 2 41 0 30 0 0 0 chr3 117236105 117236135 -110288443 + AT_rich Low_complexity Low_complexity 1 30 0 3843 172 51 33 chr3 117236428 117237291 -110287287 + L1MA4 LINE L1 5227 6106 -194 198 71 0 0 chr3 117238656 117238684 -110285894 + (CA)n Simple_repeat Simple_repeat 1 28 0 315 394 49 25 chr3 117238965 117239333 -110285245 + LTR67 LTR ERVL 121 497 -60 1622 209 30 43 chr3 117241449 117241842 -110282736 + MLT1B LTR MaLR 3 390 0 1464 191 14 23 chr3 117243234 117243579 -110280999 - L1MA6 LINE L1 0 6300 5959 5708 240 67 17 chr3 117243608 117245175 -110279403 - L1M4c LINE L1 -4519 2134 588 1621 207 25 8 chr3 117245285 117245642 -110278936 - MLT1A1 LTR MaLR 0 365 3 7264 42 0 0 chr3 117246330 117247376 -110277202 - L1PA5 LINE L1 -3 6151 5106 264 224 0 41 chr3 117247630 117247777 -110276801 + GA-rich Low_complexity Low_complexity 3 143 0 241 371 61 0 chr3 117247868 117248000 -110276578 + L2 LINE L2 2739 2878 -436 2546 114 8 0 chr3 117249373 117249734 -110274844 - THE1B LTR MaLR 0 364 1 814 274 23 57 chr3 117250809 117251369 -110273209 - L1MDa LINE L1 -3594 2946 2398 197 116 0 47 chr3 117251557 117251600 -110272978 + (TATG)n Simple_repeat Simple_repeat 4 44 0 496 280 13 0 chr3 117251619 117251776 -110272802 - L1MDa LINE L1 -4500 2040 1882 289 176 0 20 chr3 117251876 117251927 -110272651 + polypurine Low_complexity Low_complexity 3 52 0 756 141 11 23 chr3 117251928 117252105 -110272473 + GA-rich Low_complexity Low_complexity 2 176 0 606 301 62 22 chr3 117252985 117253340 -110271238 - L1ME3A LINE L1 -289 5881 5513 23 78 0 0 chr3 117253365 117253416 -110271162 + AT_rich Low_complexity Low_complexity 1 51 0 457 273 105 7 chr3 117253914 117254057 -110270521 - L1ME3A LINE L1 -2227 5581 5425 2040 180 2 14 chr3 117254075 117254498 -110270080 - L1PA16 LINE L1 -9 6157 5740 3921 192 25 16 chr3 117254952 117255944 -110268634 - L1PA16 LINE L1 -99 6067 4903 1238 98 11 16 chr3 117255944 117256128 -110268450 + AluY SINE Alu 127 309 -2 2010 245 32 18 chr3 117256128 117256623 -110267955 - L1 LINE L1 -1251 4895 4390 243 0 0 0 chr3 117256623 117256650 -110267928 + (TG)n Simple_repeat Simple_repeat 2 28 0 2010 245 32 18 chr3 117256650 117256718 -110267860 - L1 LINE L1 -1756 4390 4324 5013 206 26 9 chr3 117256731 117259529 -110265049 + L1PA13 LINE L1 1 3091 -3706 922 185 17 0 chr3 117259528 117259706 -110264872 - L1 LINE L1 -1938 4208 4028 * 336 252 66 26 chr3 117259733 117259884 -110264694 - L1M LINE L1 -2398 5410 5254 886 217 20 30 chr3 117260098 117260296 -110264282 - MLT1B LTR MaLR -2 388 193 242 329 91 21 chr3 117260541 117261312 -110263266 - L1M4 LINE L1 -1632 4514 3690 21 36 0 0 chr3 117261320 117261348 -110263230 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr3 117262155 117262191 -110262387 + AT_rich Low_complexity Low_complexity 1 36 0 1927 115 56 0 chr3 117262647 117262933 -110261645 + AluSp SINE Alu 3 304 -9 514 204 11 0 chr3 117263093 117263186 -110261392 - AluJ/FLAM SINE Alu -217 95 2 200 61 61 0 chr3 117263375 117263408 -110261170 + A-rich Low_complexity Low_complexity 5 39 0 321 286 0 0 chr3 117263643 117263762 -110260816 + CT-rich Low_complexity Low_complexity 1 119 0 434 294 159 14 chr3 117263814 117264028 -110260550 + MIR SINE MIR 7 251 -11 323 376 95 14 chr3 117264487 117264708 -110259870 + L2 LINE L2 2460 2698 -616 4972 168 54 11 chr3 117264748 117265777 -110258801 - L1MA4 LINE L1 -1 6299 5228 35 63 0 0 chr3 117266046 117266109 -110258469 + AT_rich Low_complexity Low_complexity 1 63 0 24 0 0 0 chr3 117267169 117267193 -110257385 + AT_rich Low_complexity Low_complexity 1 24 0 455 68 0 27 chr3 117268376 117268449 -110256129 + (TCTA)n Simple_repeat Simple_repeat 4 74 0 195 42 0 0 chr3 117269702 117269726 -110254852 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 25 51 0 0 chr3 117269752 117269791 -110254787 + AT_rich Low_complexity Low_complexity 1 39 0 291 233 107 0 chr3 117270284 117270387 -110254191 - MLT1B LTR MaLR -227 138 25 492 264 106 47 chr3 117270473 117270878 -110253700 - L1MDb LINE L1 -5115 955 527 313 314 76 57 chr3 117271060 117271249 -110253329 - L1MDb LINE L1 -5622 448 253 1412 184 54 120 chr3 117271249 117271749 -110252829 + MLT1C LTR MaLR 1 467 0 313 314 76 57 chr3 117271749 117271769 -110252809 - L1MDb LINE L1 -5817 253 235 210 338 43 58 chr3 117272308 117272447 -110252131 - L3 LINE CR1 -1100 477 341 187 405 11 11 chr3 117273618 117273707 -110250871 + MER5B DNA MER1_type 26 114 -64 1301 56 33 88 chr3 117275745 117275960 -110248618 - AluY SINE Alu -8 303 101 203 350 70 0 chr3 117276421 117276521 -110248057 - L2 LINE L2 -674 2640 2534 1392 216 55 32 chr3 117276558 117276906 -110247672 + MLT1A1 LTR MaLR 10 365 0 1906 128 85 3 chr3 117277511 117277877 -110246701 - L1P4 LINE L1 -483 5683 5288 51 0 0 0 chr3 117283468 117283519 -110241059 + AT_rich Low_complexity Low_complexity 1 51 0 28 61 0 0 chr3 117287148 117287197 -110237381 + AT_rich Low_complexity Low_complexity 1 49 0 1245 226 16 72 chr3 117288131 117288494 -110236084 - MER2 DNA MER2_type -1 343 1 210 191 0 0 chr3 117288921 117288968 -110235610 + (TA)n Simple_repeat Simple_repeat 2 48 0 2049 145 0 7 chr3 117289014 117289324 -110235254 - AluSx SINE Alu -4 308 1 35 41 0 0 chr3 117289361 117289410 -110235168 + AT_rich Low_complexity Low_complexity 1 49 0 233 37 0 0 chr3 117290568 117290595 -110233983 + (T)n Simple_repeat Simple_repeat 1 27 0 1843 78 4 0 chr3 117290610 117290842 -110233736 - AluSp SINE Alu -78 235 3 961 171 278 4 chr3 117291559 117291877 -110232701 - AluJb SINE Alu 0 385 1 586 332 59 71 chr3 117291900 117292729 -110231849 + L2 LINE L2 1344 2162 -1152 679 150 0 17 chr3 117292783 117292903 -110231675 - AluSc SINE Alu -55 254 137 555 169 0 0 chr3 117292902 117292991 -110231587 - AluS SINE Alu -224 89 1 * 265 313 102 14 chr3 117293321 117293468 -110231110 - MIR SINE MIR -74 188 29 13164 55 8 0 chr3 117293554 117295388 -110229190 + L1P2 LINE L1 3697 5545 -609 242 97 32 48 chr3 117295508 117295570 -110229008 + (CCCA)n Simple_repeat Simple_repeat 2 62 0 297 75 0 0 chr3 117295572 117295612 -110228966 + (GGGAA)n Simple_repeat Simple_repeat 4 43 0 24 0 0 0 chr3 117295637 117295661 -110228917 + AT_rich Low_complexity Low_complexity 1 24 0 396 108 15 0 chr3 117295661 117295726 -110228852 - L1MA9 LINE L1 0 6312 6247 301 344 122 5 chr3 117296026 117296215 -110228363 + MIR SINE MIR 15 225 -37 2628 7 0 0 chr3 117296215 117296506 -110228072 + AluYa5 SINE Alu 1 291 -20 270 305 59 93 chr3 117296647 117296883 -110227695 - L2 LINE L2 0 3313 3086 1258 200 47 0 chr3 117296926 117297201 -110227377 - L1MC1 LINE L1 -9 6324 6037 419 222 60 8 chr3 117297206 117297323 -110227255 - L1MC1 LINE L1 -690 5654 5532 223 319 0 21 chr3 117297486 117297580 -110226998 + G-rich Low_complexity Low_complexity 2 93 0 1991 135 0 3 chr3 117298147 117298451 -110226127 - AluSx SINE Alu -9 303 1 308 184 0 149 chr3 117298844 117298931 -110225647 - L2 LINE L2 -2 3311 3238 207 0 0 0 chr3 117299044 117299067 -110225511 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1016 176 17 169 chr3 117299073 117299368 -110225210 + MER47B DNA MER2_type 52 301 -117 1155 111 17 94 chr3 117299597 117299831 -110224747 - Tigger1 DNA MER2_type -1 2417 2202 902 159 13 13 chr3 117299820 117299977 -110224601 - Tigger1 DNA MER2_type -2261 157 1 * 947 210 4 48 chr3 117300477 117300748 -110223830 - AluJb SINE Alu -27 285 27 470 125 39 10 chr3 117300970 117301074 -110223504 + L1PA5 LINE L1 6047 6153 -1 987 258 26 17 chr3 117301759 117302061 -110222517 + MLT1A1 LTR MaLR 3 307 -58 759 215 60 10 chr3 117303275 117303475 -110221103 - MER2 DNA MER2_type -134 211 2 6236 209 37 25 chr3 117304349 117305444 -110219134 - L1M2 LINE L1 -693 5607 4461 297 0 0 0 chr3 117305444 117305477 -110219101 + (TG)n Simple_repeat Simple_repeat 2 34 0 6236 209 37 25 chr3 117305477 117306250 -110218328 - L1M2 LINE L1 -1839 4461 3699 396 0 0 0 chr3 117306896 117306940 -110217638 + (CA)n Simple_repeat Simple_repeat 2 45 0 1282 19 0 13 chr3 117307049 117307205 -110217373 - L1PA3 LINE L1 0 6155 6002 298 185 76 22 chr3 117307252 117307344 -110217234 + LTR12 LTR ERV1 1 97 -617 784 281 60 44 chr3 117307666 117308051 -110216527 + MER47B DNA MER2_type 26 416 -2 246 304 203 6 chr3 117308430 117308588 -110215990 + L2 LINE L2 3124 3312 -1 767 246 23 33 chr3 117311708 117312009 -110212569 + L1M4 LINE L1 4186 4483 -1663 * 841 237 63 63 chr3 117312001 117312301 -110212277 + L1M4 LINE L1 4694 4993 -1153 514 293 142 15 chr3 117312396 117312720 -110211858 - L1M4 LINE L1 -2282 3864 3500 414 337 21 70 chr3 117313517 117313802 -110210776 - MLT1I LTR MaLR -34 375 105 21 0 0 0 chr3 117314012 117314033 -110210545 + AT_rich Low_complexity Low_complexity 1 21 0 375 189 8 25 chr3 117315284 117315390 -110209188 - L1M4 LINE L1 -1814 5034 4928 2674 79 10 13 chr3 117315398 117315789 -110208789 - L1PA7 LINE L1 -15 6139 5750 2085 258 20 9 chr3 117315903 117316270 -110208308 - L1M4 LINE L1 -3393 3455 3094 915 28 0 0 chr3 117316270 117316379 -110208199 - L1PA3 LINE L1 0 6155 6047 2085 258 20 9 chr3 117316379 117316792 -110207786 - L1M4 LINE L1 -3754 3094 2667 186 133 0 0 chr3 117317598 117317628 -110206950 + (TTA)n Simple_repeat Simple_repeat 2 31 0 312 318 90 69 chr3 117318515 117318905 -110205673 + L1MEc LINE L1 2145 2542 -4580 314 310 102 28 chr3 117319149 117319404 -110205174 + L1MEc LINE L1 2853 3126 -3996 2460 44 3 0 chr3 117319410 117319705 -110204873 + AluY SINE Alu 11 306 -5 244 318 126 30 chr3 117319802 117320271 -110204307 + L1MEc LINE L1 3173 3686 -3255 641 244 115 37 chr3 117320306 117320576 -110204002 + L1MEc LINE L1 19 309 -6114 1754 268 83 31 chr3 117321050 117321934 -110202644 + L1ME1 LINE L1 5222 6162 -4 369 263 126 22 chr3 117322074 117322352 -110202226 + L1MEc LINE L1 3717 4023 -2918 760 284 99 32 chr3 117322471 117323038 -110201540 - L1ME1 LINE L1 -3 6163 5559 308 258 54 11 chr3 117323120 117323213 -110201365 + MIR SINE MIR 89 185 -77 22 35 0 0 chr3 117323668 117323697 -110200881 + AT_rich Low_complexity Low_complexity 1 29 0 732 281 104 35 chr3 117324065 117324631 -110199947 - L1ME1 LINE L1 -3 6163 5559 308 258 54 11 chr3 117324714 117324807 -110199771 + MIR SINE MIR 89 185 -77 6398 142 32 10 chr3 117325698 117326807 -110197771 + Tigger3b DNA MER2_type 98 1230 -1 339 312 43 36 chr3 117326933 117327071 -110197507 + MER5B DNA MER1_type 1 139 -39 204 125 0 0 chr3 117327736 117327768 -110196810 + (GGGA)n Simple_repeat Simple_repeat 3 34 0 21 36 0 0 chr3 117327793 117327821 -110196757 + AT_rich Low_complexity Low_complexity 1 28 0 1026 262 0 35 chr3 117328194 117328507 -110196071 + AluJo SINE Alu 1 302 0 592 237 85 47 chr3 117329204 117329415 -110195163 + MER20 DNA MER1_type 1 219 0 331 337 128 10 chr3 117330368 117330564 -110194014 + MIR SINE MIR 30 248 -14 190 333 0 0 chr3 117330595 117330652 -110193926 - L2 LINE L2 -299 2973 2917 3313 186 28 11 chr3 117331441 117332089 -110192489 - MER39 LTR ERV1 0 707 1 2135 73 43 10 chr3 117332597 117332927 -110191651 + AluY SINE Alu 1 340 0 712 272 138 30 chr3 117332932 117333395 -110191183 + L1MC4a LINE L1 5370 5882 -1926 41 48 0 0 chr3 117335178 117335240 -110189338 + AT_rich Low_complexity Low_complexity 1 62 0 732 290 71 24 chr3 117335242 117335666 -110188912 - L1MCa LINE L1 -5111 1315 872 1119 239 11 4 chr3 117335798 117336066 -110188512 + L1MA6 LINE L1 6031 6300 0 362 336 73 20 chr3 117336069 117336316 -110188262 + L1M4 LINE L1 3117 3376 -2770 805 291 24 63 chr3 117336487 117336982 -110187596 + L1M4 LINE L1 3370 3845 -2301 6585 62 24 47 chr3 117337042 117338488 -110186090 - L1PA5 LINE L1 -7 6147 4718 298 340 98 14 chr3 117338732 117338947 -110185631 - MIR SINE MIR -1 261 29 9669 103 19 1 chr3 117339035 117340521 -110184057 + L1P LINE L1 3699 5210 -936 267 341 11 0 chr3 117340659 117340750 -110183828 - MLT1H LTR MaLR -364 185 94 5097 196 26 23 chr3 117341181 117341690 -110182888 - L1MA5 LINE L1 0 6300 5794 288 53 0 0 chr3 117341690 117341728 -110182850 + (TG)n Simple_repeat Simple_repeat 2 39 0 5097 196 26 23 chr3 117341728 117343023 -110181555 - L1MA5 LINE L1 -506 5794 4468 315 0 0 0 chr3 117343023 117343058 -110181520 + (TG)n Simple_repeat Simple_repeat 2 36 0 5097 196 26 23 chr3 117343058 117343256 -110181322 - L1MA5 LINE L1 -1832 4468 4272 186 150 0 0 chr3 117343292 117343332 -110181246 + (T)n Simple_repeat Simple_repeat 1 40 0 186 113 62 25 chr3 117343406 117343486 -110181092 + T-rich Low_complexity Low_complexity 6 88 0 355 326 18 13 chr3 117343655 117343882 -110180696 - L1MDa LINE L1 -2549 4015 3788 1683 255 47 89 chr3 117344073 117344303 -110180275 - L1MDa LINE L1 -2790 3774 3536 3620 182 31 1 chr3 117344303 117345067 -110179511 - L1MA6 LINE L1 0 6300 5514 1683 255 47 89 chr3 117345067 117346255 -110178323 - L1MDa LINE L1 -3028 3536 2465 1648 199 20 60 chr3 117346602 117347005 -110177573 + MLT1B LTR MaLR 1 387 -3 2881 233 103 4 chr3 117347293 117348197 -110176381 - L1 LINE L1 -2391 3755 2763 576 169 0 0 chr3 117348304 117348434 -110176144 + C-rich Low_complexity Low_complexity 1 130 0 209 230 14 27 chr3 117348457 117348531 -110176047 + (CCCG)n Simple_repeat Simple_repeat 2 74 0 * 296 306 0 0 chr3 117348482 117348603 -110175975 + C-rich Low_complexity Low_complexity 1 121 0 239 316 21 11 chr3 117349228 117349323 -110175255 - L1MDa LINE L1 -5514 532 437 261 342 69 30 chr3 117349682 117349913 -110174665 - L1MDa LINE L1 -5676 369 130 326 311 25 25 chr3 117350449 117350610 -110173968 + L1ME LINE L1 3 163 -5907 553 84 75 28 chr3 117350613 117350720 -110173858 - MER34 LTR ERV1 0 542 431 995 188 35 10 chr3 117350845 117351042 -110173536 + L1PB4 LINE L1 5845 6046 -110 5669 205 163 34 chr3 117351042 117352595 -110171983 + MER52A LTR ERV1 1 1753 -2 274 175 35 0 chr3 117352596 117352653 -110171925 + L1PB4 LINE L1 6042 6100 -56 605 279 29 20 chr3 117352665 117352909 -110171669 + L1M4 LINE L1 4546 4791 -1355 550 79 26 79 chr3 117353035 117353149 -110171429 - AluYb8 SINE Alu -209 109 2 6610 96 10 3 chr3 117354231 117355982 -110168596 - L1PA7 LINE L1 -10 6144 4381 2475 103 2 35 chr3 117355983 117356381 -110168197 + L1P LINE L1 3370 3754 -2392 384 273 12 81 chr3 117356517 117356678 -110167900 + L1M4 LINE L1 3696 3845 -2301 7198 52 8 0 chr3 117356738 117358223 -110166355 - L1PA5 LINE L1 -7 6147 4657 1301 56 33 88 chr3 117358884 117359099 -110165479 + AluY SINE Alu 101 303 -8 2567 179 8 15 chr3 117359804 117360278 -110164300 + MER39 LTR ERV1 237 707 0 29 0 0 0 chr3 117361099 117361128 -110163450 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 117361177 117361198 -110163380 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 117361541 117361563 -110163015 + AT_rich Low_complexity Low_complexity 1 22 0 438 333 21 70 chr3 117361770 117362055 -110162523 + MLT1I LTR MaLR 105 375 -34 519 261 0 36 chr3 117362608 117362746 -110161832 - MLT1A1 LTR MaLR -220 145 13 1169 120 30 77 chr3 117362986 117363220 -110161358 - L1M2 LINE L1 -526 5774 5552 24 85 0 0 chr3 117366001 117366060 -110158518 + AT_rich Low_complexity Low_complexity 1 59 0 385 198 16 0 chr3 117366220 117366341 -110158237 + (TA)n Simple_repeat Simple_repeat 2 124 0 328 272 5 49 chr3 117366484 117366668 -110157910 + C-rich Low_complexity Low_complexity 5 180 0 181 329 57 0 chr3 117366971 117367041 -110157537 + MIR SINE MIR 69 142 -66 1987 146 33 30 chr3 117367047 117367410 -110157168 + THE1B LTR MaLR 1 364 0 1421 183 13 10 chr3 117367670 117367971 -110156607 + L1PA15 LINE L1 4972 5273 -873 4077 131 17 11 chr3 117367980 117368628 -110155950 + L1PA15 LINE L1 5407 6058 -107 245 176 0 59 chr3 117368754 117368822 -110155756 + L1MC4 LINE L1 6640 6703 -1339 21 0 0 0 chr3 117368853 117368874 -110155704 + AT_rich Low_complexity Low_complexity 1 21 0 304 220 10 30 chr3 117369081 117369181 -110155397 + L1PA13 LINE L1 6066 6163 0 246 128 0 0 chr3 117370335 117370374 -110154204 - MLT2B1 LTR ERVL -10 510 472 61 64 0 0 chr3 117370387 117370497 -110154081 + AT_rich Low_complexity Low_complexity 1 110 0 670 207 16 5 chr3 117370508 117370653 -110153925 + MLT2B1 LTR ERVL 331 479 -36 23 0 0 0 chr3 117370750 117370773 -110153805 + AT_rich Low_complexity Low_complexity 1 23 0 306 265 99 38 chr3 117370839 117371050 -110153528 - L1M4 LINE L1 -3583 2563 2340 31 58 0 0 chr3 117371150 117371202 -110153376 + AT_rich Low_complexity Low_complexity 1 52 0 2245 91 0 0 chr3 117371333 117371620 -110152958 + AluSc SINE Alu 5 291 -18 21 36 0 0 chr3 117371620 117371648 -110152930 + AT_rich Low_complexity Low_complexity 1 28 0 1355 114 10 0 chr3 117372870 117373071 -110151507 + MER11B LTR ERVK 1 203 -1033 281 240 13 0 chr3 117374000 117374075 -110150503 - MIR SINE MIR -68 140 65 222 364 23 31 chr3 117375351 117375480 -110149098 + L2 LINE L2 2624 2751 -563 24 0 0 0 chr3 117377071 117377095 -110147483 + AT_rich Low_complexity Low_complexity 1 24 0 1942 175 33 22 chr3 117377114 117377474 -110147104 + THE1B LTR MaLR 1 364 0 10184 104 64 5 chr3 117377474 117378965 -110145613 + THE1B-int LTR MaLR 1 1579 -1 1811 142 90 38 chr3 117378966 117379312 -110145266 + THE1B LTR MaLR 1 364 0 246 219 0 0 chr3 117379518 117379582 -110144996 + (TA)n Simple_repeat Simple_repeat 2 65 0 183 246 0 0 chr3 117380122 117380179 -110144399 + GA-rich Low_complexity Low_complexity 2 58 0 23 33 0 0 chr3 117381045 117381075 -110143503 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 117382650 117382672 -110141906 + AT_rich Low_complexity Low_complexity 1 22 0 297 240 27 13 chr3 117383596 117383671 -110140907 - MER21B LTR ERV1 -764 99 24 21 0 0 0 chr3 117383674 117383695 -110140883 + AT_rich Low_complexity Low_complexity 1 21 0 498 229 22 89 chr3 117383717 117383896 -110140682 + MIR SINE MIR 72 238 -24 22 56 0 0 chr3 117383897 117383933 -110140645 + AT_rich Low_complexity Low_complexity 1 36 0 204 287 20 0 chr3 117384110 117384211 -110140367 + (TA)n Simple_repeat Simple_repeat 2 104 0 1814 132 21 14 chr3 117384272 117384598 -110139980 + AluSx SINE Alu 1 328 0 24 0 0 0 chr3 117385312 117385336 -110139242 + AT_rich Low_complexity Low_complexity 1 24 0 490 49 0 0 chr3 117385339 117385400 -110139178 + tRNA-Glu-GAG tRNA tRNA 15 75 0 25 90 0 0 chr3 117385763 117385830 -110138748 + AT_rich Low_complexity Low_complexity 1 67 0 415 202 148 39 chr3 117386332 117386424 -110138154 + AluJb SINE Alu 5 86 -216 183 42 0 0 chr3 117386424 117386448 -110138130 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 415 202 148 39 chr3 117386448 117386587 -110137991 + AluJb SINE Alu 86 301 -1 1188 327 24 48 chr3 117386675 117387555 -110137023 + ERVL LTR ERVL 3991 4930 -834 1306 220 123 40 chr3 117387981 117388385 -110136193 - MLT1D LTR MaLR -36 469 1 25 51 0 0 chr3 117388732 117388771 -110135807 + AT_rich Low_complexity Low_complexity 1 39 0 1552 147 45 162 chr3 117388816 117389302 -110135276 + Tigger2 DNA MER2_type 2 2718 0 28 0 0 0 chr3 117390867 117390895 -110133683 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 117390958 117390979 -110133599 + AT_rich Low_complexity Low_complexity 1 21 0 289 175 8 119 chr3 117392029 117392155 -110132423 + L1ME2 LINE L1 3825 3936 -2210 616 269 82 41 chr3 117392215 117392653 -110131925 + L1ME2 LINE L1 4085 4540 -1606 1918 151 0 0 chr3 117392715 117393007 -110131571 - AluSx SINE Alu -20 292 1 269 225 42 84 chr3 117393012 117393154 -110131424 + L1ME2 LINE L1 4682 4817 -1329 651 260 84 59 chr3 117393182 117393555 -110131023 + MER57A LTR ERV1 20 403 0 935 274 79 16 chr3 117393555 117394109 -110130469 + L1ME2 LINE L1 4815 5403 -743 596 284 134 65 chr3 117394180 117394701 -110129877 + LTR50 LTR ERVL 87 643 -152 1815 228 72 93 chr3 117394854 117394968 -110129610 + L1ME2 LINE L1 5407 5522 -642 1373 203 13 39 chr3 117394968 117395089 -110129489 + AluJo SINE Alu 1 124 -188 309 26 0 0 chr3 117395089 117395127 -110129451 + (TAA)n Simple_repeat Simple_repeat 2 39 0 1373 203 13 39 chr3 117395127 117395315 -110129263 + AluJo SINE Alu 124 302 -10 1815 228 72 93 chr3 117395315 117395973 -110128605 + L1ME2 LINE L1 5522 6163 -1 747 179 125 21 chr3 117396180 117396420 -110128158 + Charlie1 DNA MER1_type 2497 2761 0 261 264 58 25 chr3 117396466 117396587 -110127991 + LTR68 LTR ERV1 7 131 -609 291 170 0 0 chr3 117396973 117397020 -110127558 - MSTA LTR MaLR 0 428 382 2932 249 37 22 chr3 117397321 117398364 -110126214 - L1MC3 LINE L1 -745 5401 4972 1974 147 0 0 chr3 117398364 117398664 -110125914 - AluY SINE Alu -11 300 1 2932 249 37 22 chr3 117398664 117399090 -110125488 - L1MC3 LINE L1 -1174 4972 4554 712 266 30 0 chr3 117399095 117399298 -110125280 + MER74A LTR ERVL 350 558 0 27 0 0 0 chr3 117399750 117399777 -110124801 + AT_rich Low_complexity Low_complexity 1 27 0 832 366 24 49 chr3 117399836 117400464 -110124114 + L1PA16 LINE L1 -593 18 -6175 10743 259 46 33 chr3 117401322 117405717 -110118861 + L1PA16 LINE L1 802 5220 -983 2177 70 0 78 chr3 117405717 117406048 -110118530 - AluY SINE Alu -6 305 1 7116 49 22 2 chr3 117406065 117407318 -110117260 - L1PA5 LINE L1 -1 6153 4886 26 0 0 0 chr3 117408117 117408143 -110116435 + AT_rich Low_complexity Low_complexity 1 26 0 647 355 9 0 chr3 117408308 117408528 -110116050 - MIR SINE MIR -39 223 2 630 270 65 27 chr3 117409323 117409508 -110115070 - MER58C DNA MER1_type -22 193 2 34 55 0 0 chr3 117410196 117410251 -110114327 + AT_rich Low_complexity Low_complexity 1 55 0 237 180 0 0 chr3 117411025 117411075 -110113503 + (TA)n Simple_repeat Simple_repeat 2 51 0 18133 182 19 7 chr3 117411872 117415393 -110109185 + L1P LINE L1 1431 4992 -1154 2011 124 3 10 chr3 117416577 117416891 -110107687 + AluSx SINE Alu 1 312 0 202 424 25 17 chr3 117416941 117417059 -110107519 + MIR3 SINE MIR 39 157 -51 384 58 10 240 chr3 117417076 117417126 -110107452 - MADE1 DNA Mariner 0 80 65 2820 6 0 0 chr3 117417126 117417437 -110107141 + AluYa5 SINE Alu 1 311 0 384 58 10 240 chr3 117417437 117417490 -110107088 - MADE1 DNA Mariner -15 65 1 3789 131 3 11 chr3 117418460 117419107 -110105471 - L1P LINE L1 -1155 4991 4350 * 4521 173 36 15 chr3 117419106 117420087 -110104491 + L1PA16 LINE L1 5213 6217 -6 912 333 64 7 chr3 117421227 117421633 -110102945 + LTR16A LTR ERVL 22 450 0 282 100 29 29 chr3 117421673 117421743 -110102835 + T-rich Low_complexity Low_complexity 6 75 0 888 294 44 18 chr3 117421766 117422150 -110102428 + HERV16 LTR ERVL 125 518 -4478 495 321 0 13 chr3 117422707 117422866 -110101712 - MER45A DNA AcHobo -13 165 9 191 349 60 20 chr3 117422903 117423052 -110101526 + L2 LINE L2 3123 3277 -36 2779 289 29 41 chr3 117423299 117424658 -110099920 + L1MA6 LINE L1 466 2470 -5095 2263 116 39 20 chr3 117424658 117425013 -110099565 - THE1B LTR MaLR -2 362 1 2779 289 29 41 chr3 117425013 117425053 -110099525 + L1MA6 LINE L1 2470 2509 -5056 * 12533 189 34 60 chr3 117425043 117425317 -110099261 + L1MA6 LINE L1 3413 3693 -4026 2247 108 0 7 chr3 117425317 117425623 -110098955 + AluY SINE Alu 1 304 -7 12533 189 34 60 chr3 117425623 117426148 -110098430 + L1MA6 LINE L1 3693 4230 -3489 2299 113 0 0 chr3 117426148 117426457 -110098121 + AluSc SINE Alu 1 309 0 12533 189 34 60 chr3 117426457 117429959 -110094619 + L1MA6 LINE L1 4230 7588 -131 1189 238 20 7 chr3 117429959 117430257 -110094321 + AluSx SINE Alu 1 302 0 12533 189 34 60 chr3 117430257 117430364 -110094214 + L1MA6 LINE L1 7588 7696 -23 22 35 0 0 chr3 117430406 117430435 -110094143 + AT_rich Low_complexity Low_complexity 1 29 0 1442 232 74 80 chr3 117430657 117431170 -110093408 - MLT2B1 LTR ERVL -6 514 5 6594 206 60 4 chr3 117431173 117432552 -110092026 - ERVL-B1 LTR ERVL -6 5758 4303 1162 245 4 4 chr3 117432558 117432819 -110091759 + MLT1A2-int LTR MaLR 1475 1735 0 795 210 28 6 chr3 117432819 117432995 -110091583 + MLT1A2 LTR MaLR 1 180 -194 417 119 155 0 chr3 117433045 117433129 -110091449 + MLT1A2 LTR MaLR 294 390 0 700 190 0 0 chr3 117433803 117433924 -110090654 + MER7A DNA MER2_type 11 129 -217 347 304 0 0 chr3 117433919 117433998 -110090580 + MER7A DNA MER2_type 251 329 -7 * 1072 212 101 26 chr3 117434553 117434920 -110089658 + MSTC LTR MaLR 1 428 0 29 28 0 0 chr3 117435159 117435195 -110089383 + AT_rich Low_complexity Low_complexity 1 36 0 2561 55 0 0 chr3 117435472 117435783 -110088795 - AluY SINE Alu 0 311 1 243 186 326 0 chr3 117436043 117436129 -110088449 - MLT1A1 LTR MaLR -17 379 266 498 240 26 71 chr3 117436201 117436388 -110088190 - MLT1A1 LTR MaLR -172 193 5 37 39 0 0 chr3 117436424 117436475 -110088103 + AT_rich Low_complexity Low_complexity 1 51 0 236 357 31 0 chr3 117436639 117436737 -110087841 + L3 LINE CR1 1367 1467 -110 316 0 45 0 chr3 117437002 117437046 -110087532 + (GA)n Simple_repeat Simple_repeat 1 46 0 226 233 0 0 chr3 117437762 117437805 -110086773 + MIR SINE MIR 72 114 -148 2256 110 0 0 chr3 117438113 117438412 -110086166 - AluSq SINE Alu -14 299 1 193 325 50 12 chr3 117438587 117438667 -110085911 - MIR3 SINE MIR -114 94 12 437 335 104 13 chr3 117438939 117439169 -110085409 + MIR SINE MIR 2 252 -10 23 33 0 0 chr3 117439702 117439732 -110084846 + AT_rich Low_complexity Low_complexity 1 30 0 2274 71 0 3 chr3 117439734 117440048 -110084530 + AluY SINE Alu 1 313 0 780 251 32 79 chr3 117441075 117441625 -110082953 + L1M4 LINE L1 662 1178 -5368 5497 179 67 18 chr3 117441643 117442811 -110081767 - Tigger3b DNA MER2_type -1 1230 6 637 215 0 77 chr3 117442816 117443090 -110081488 + L1M4 LINE L1 1195 1495 -5330 10047 96 9 13 chr3 117443090 117444226 -110080352 + L1PA7 LINE L1 3891 5030 -1124 1803 179 0 3 chr3 117444226 117444528 -110080050 + AluSx SINE Alu 1 301 -11 10047 96 9 13 chr3 117444528 117444977 -110079601 + L1PA7 LINE L1 5030 5479 -675 1902 144 18 0 chr3 117444977 117445262 -110079316 + AluSg SINE Alu 1 290 -20 10047 96 9 13 chr3 117445262 117445930 -110078648 + L1PA7 LINE L1 5479 6151 -3 637 215 0 77 chr3 117445930 117446363 -110078215 + L1M4 LINE L1 1495 2135 -4690 2001 60 11 11 chr3 117446738 117447004 -110077574 + L1PA8 LINE L1 5905 6170 -2 22 0 0 0 chr3 117447017 117447039 -110077539 + AT_rich Low_complexity Low_complexity 1 22 0 1625 101 0 9 chr3 117447218 117447445 -110077133 - AluY SINE Alu -3 308 84 24 0 0 0 chr3 117448628 117448652 -110075926 + AT_rich Low_complexity Low_complexity 1 24 0 299 277 28 21 chr3 117450782 117450973 -110073605 - LTR50 LTR ERVL 0 795 587 502 235 71 77 chr3 117451282 117451452 -110073126 - LTR41 LTR ERVL -604 169 1 618 319 72 41 chr3 117451735 117451926 -110072652 - ERVL LTR ERVL -279 5485 5301 1662 60 5 0 chr3 117451926 117452141 -110072437 - L1PA3 LINE L1 -3 6152 5937 618 319 72 41 chr3 117452141 117452466 -110072112 - ERVL LTR ERVL -463 5301 4953 479 371 42 14 chr3 117452536 117452824 -110071754 - ERVL LTR ERVL -901 4863 4568 1463 182 35 0 chr3 117452826 117453112 -110071466 + L1PA16 LINE L1 5865 6160 -6 426 331 129 29 chr3 117453818 117454090 -110070488 - ERVL LTR ERVL -1364 4290 3992 228 265 15 0 chr3 117454094 117454162 -110070416 - L1MC4 LINE L1 -1357 6685 6617 778 317 52 17 chr3 117454330 117454617 -110069961 - ERVL LTR ERVL -2355 3299 3003 263 231 75 56 chr3 117454692 117454852 -110069726 - L1MEc LINE L1 -6153 243 81 23 33 0 0 chr3 117455016 117455046 -110069532 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr3 117455321 117455358 -110069220 + AT_rich Low_complexity Low_complexity 1 37 0 2086 130 0 0 chr3 117455525 117455855 -110068723 + AluSc SINE Alu 1 309 0 462 79 0 0 chr3 117456223 117456286 -110068292 + (TA)n Simple_repeat Simple_repeat 2 64 0 1604 163 63 30 chr3 117457627 117457989 -110066589 - THE1C LTR MaLR -1 374 1 281 322 70 70 chr3 117458061 117458431 -110066147 - MLT1H LTR MaLR -84 465 96 3110 155 8 2 chr3 117458550 117459046 -110065532 - MER1A DNA MER1_type 0 529 31 806 155 16 0 chr3 117459061 117459190 -110065388 - Charlie3 DNA MER1_type -4 2706 2576 510 233 108 0 chr3 117459832 117459952 -110064626 + FLAM_C SINE Alu 1 133 0 29 60 0 0 chr3 117460316 117460366 -110064212 + AT_rich Low_complexity Low_complexity 1 50 0 21 0 0 0 chr3 117460498 117460519 -110064059 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 117461666 117461688 -110062890 + AT_rich Low_complexity Low_complexity 1 22 0 312 27 0 0 chr3 117463780 117463817 -110060761 + (TA)n Simple_repeat Simple_repeat 1 37 0 1998 111 0 59 chr3 117463817 117464123 -110060455 - AluSx SINE Alu -12 300 13 464 154 13 0 chr3 117465389 117465467 -110059111 - MADE1 DNA Mariner 0 80 2 985 196 5 44 chr3 117465721 117465925 -110058653 - MLT1D LTR MaLR -9 496 301 414 217 22 72 chr3 117465954 117466092 -110058486 - MLT1D LTR MaLR -372 133 3 1654 146 3 11 chr3 117466669 117466956 -110057622 + L1PA16 LINE L1 5873 6157 -9 234 146 0 36 chr3 117467100 117467155 -110057423 + (TA)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr3 117467886 117467907 -110056671 + AT_rich Low_complexity Low_complexity 1 21 0 228 361 56 0 chr3 117468132 117468240 -110056338 + MIR3 SINE MIR 42 155 -53 274 273 68 0 chr3 117468412 117468500 -110056078 - L1MC4 LINE L1 -31 8011 7918 216 0 0 0 chr3 117468512 117468536 -110056042 + (TG)n Simple_repeat Simple_repeat 1 24 0 1080 250 116 56 chr3 117468580 117469184 -110055394 - L1MC4 LINE L1 -122 7920 7281 888 286 72 31 chr3 117469237 117469625 -110054953 - L1MC4 LINE L1 -787 7104 6576 2284 113 24 51 chr3 117469625 117470040 -110054538 - L1PA11 LINE L1 -1 6173 5770 888 286 72 31 chr3 117470040 117470177 -110054401 - L1MC4 LINE L1 -1315 6576 6446 217 0 0 0 chr3 117470258 117470282 -110054296 + (TTTTTA)n Simple_repeat Simple_repeat 1 180 0 251 28 0 0 chr3 117470282 117470318 -110054260 - AluY SINE Alu 0 323 264 498 250 40 20 chr3 117470318 117470470 -110054108 - L1ME LINE L1 -858 5786 5632 275 200 54 0 chr3 117470531 117470661 -110053917 + (TA)n Simple_repeat Simple_repeat 2 138 0 357 280 42 6 chr3 117470738 117470906 -110053672 - L1ME LINE L1 -1045 5599 5426 1627 284 79 29 chr3 117470927 117471795 -110052783 - MER21B LTR ERV1 -55 808 102 3852 117 48 99 chr3 117471874 117472701 -110051877 + LTR1 LTR ERV1 1 785 0 310 284 0 63 chr3 117472728 117472823 -110051755 - MER21B LTR ERV1 -774 89 1 875 253 59 32 chr3 117472895 117473496 -110051082 - L1ME LINE L1 -1230 5414 1079 402 358 65 34 chr3 117473761 117474082 -110050496 - L1ME LINE L1 -5960 865 535 1283 143 65 12 chr3 117475142 117475387 -110049191 - MSTA LTR MaLR -170 258 1 21 89 0 0 chr3 117475469 117475525 -110049053 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr3 117476704 117476726 -110047852 + AT_rich Low_complexity Low_complexity 1 22 0 352 362 98 22 chr3 117477031 117477307 -110047271 - L2 LINE L2 -1657 1657 1361 583 329 95 64 chr3 117477547 117478577 -110046001 + L1MC/D LINE L1 2761 3822 -2324 449 341 88 12 chr3 117478681 117479012 -110045566 + L1MC/D LINE L1 5009 5364 -782 243 258 65 0 chr3 117479034 117479127 -110045451 + L1MC/D LINE L1 5404 5502 -740 2463 174 38 21 chr3 117479415 117479893 -110044685 - MER66B LTR ERV1 0 486 1 394 262 148 0 chr3 117480031 117480153 -110044425 + MER5A DNA MER1_type 7 146 -43 588 243 14 7 chr3 117480153 117480297 -110044281 + MLT2F LTR ERVL 1 145 -518 947 214 122 38 chr3 117480343 117480581 -110043997 + MLT2F LTR ERVL 406 663 0 306 167 0 0 chr3 117480581 117480629 -110043949 + MER5A DNA MER1_type 142 189 0 2232 115 3 3 chr3 117480868 117481181 -110043397 + AluSq SINE Alu 1 313 0 27 49 0 0 chr3 117481312 117481353 -110043225 + AT_rich Low_complexity Low_complexity 1 41 0 1629 253 37 51 chr3 117481523 117482037 -110042541 - MLT1E2 LTR MaLR -7 619 113 36 23 0 0 chr3 117482042 117482085 -110042493 + AT_rich Low_complexity Low_complexity 1 43 0 1140 204 6 123 chr3 117482092 117482416 -110042162 - AluJb SINE Alu -16 286 1 364 210 12 12 chr3 117482416 117482497 -110042081 - MLT1E2 LTR MaLR -475 149 69 226 170 0 43 chr3 117482459 117482506 -110042072 - MLT2C2 LTR ERVL -379 85 41 * 202 277 64 0 chr3 117483829 117483876 -110040702 - L2 LINE L2 -1384 1930 1881 308 299 28 28 chr3 117485170 117485314 -110039264 - L1M4 LINE L1 -3688 2458 2315 2029 192 21 62 chr3 117485933 117486465 -110038113 + LTR54 LTR ERV1 1 510 0 25 75 0 0 chr3 117487711 117487764 -110036814 + AT_rich Low_complexity Low_complexity 1 53 0 1590 208 73 86 chr3 117487795 117488415 -110036163 - LTR9 LTR ERV1 0 612 1 246 183 0 56 chr3 117488570 117488641 -110035937 + (TA)n Simple_repeat Simple_repeat 1 67 0 48 32 0 0 chr3 117489585 117489647 -110034931 + AT_rich Low_complexity Low_complexity 1 62 0 711 207 0 0 chr3 117489647 117489768 -110034810 - FLAM_A SINE Alu -8 125 5 1851 175 10 0 chr3 117489861 117490170 -110034408 + AluSx SINE Alu 1 312 0 2371 69 0 10 chr3 117490317 117490641 -110033937 - AluY SINE Alu 0 311 1 21 0 0 0 chr3 117490642 117490663 -110033915 + AT_rich Low_complexity Low_complexity 1 21 0 2298 334 150 18 chr3 117490956 117492398 -110032180 + L2 LINE L2 1337 2968 -346 248 121 0 0 chr3 117492424 117492457 -110032121 - Tigger5 DNA MER2_type -24 2299 2267 3355 187 25 52 chr3 117492469 117493474 -110031104 - L1MCa LINE L1 -5290 1136 5 23 33 0 0 chr3 117493576 117493606 -110030972 + AT_rich Low_complexity Low_complexity 1 30 0 2383 216 132 24 chr3 117494528 117495351 -110029227 + LTR28 LTR ERV1 1 953 -67 234 275 0 14 chr3 117495404 117495473 -110029105 + LTR28 LTR ERV1 953 1020 0 1600 225 14 19 chr3 117497191 117497555 -110027023 - MLT1A1 LTR MaLR -2 363 2 224 353 33 39 chr3 117498186 117498339 -110026239 + L2 LINE L2 2633 2784 -530 203 214 45 11 chr3 117499414 117499503 -110025075 + (TTAA)n Simple_repeat Simple_repeat 3 94 0 244 125 0 83 chr3 117499828 117499876 -110024702 + MLT1A1 LTR MaLR 1 44 -330 6287 38 0 0 chr3 117499876 117500635 -110023943 - L1PA5 LINE L1 -1845 4301 3543 8825 35 1 1 chr3 117500641 117502483 -110022095 + L1PA5 LINE L1 4305 6147 -7 21 0 0 0 chr3 117502484 117502505 -110022073 + AT_rich Low_complexity Low_complexity 1 21 0 1230 188 19 121 chr3 117502505 117502878 -110021700 + MLT1A1 LTR MaLR 31 365 0 724 198 28 23 chr3 117502878 117503055 -110021523 + MLT1A1-int LTR MaLR 1 178 -1557 319 217 0 0 chr3 117503204 117503264 -110021314 - MER21B-int LTR ERV1 -93 4098 4039 13382 161 33 9 chr3 117503273 117504124 -110020454 - L1PA11 LINE L1 -2 7610 6781 1896 127 55 50 chr3 117504124 117504486 -110020092 - THE1B LTR MaLR 0 364 1 13382 161 33 9 chr3 117504486 117506962 -110017616 - L1PA11 LINE L1 -831 6781 4208 7206 240 22 17 chr3 117506977 117507245 -110017333 - L1PA11 LINE L1 -4941 2643 2378 2152 127 7 3 chr3 117507245 117507552 -110017026 - AluSc SINE Alu -1 308 1 7206 240 22 17 chr3 117507552 117509137 -110015441 - L1PA11 LINE L1 -5206 2378 2 2002 248 58 67 chr3 117509229 117509285 -110015293 - MER21B-int LTR ERV1 -3526 665 610 1946 193 19 35 chr3 117509285 117509716 -110014862 + MSTC LTR MaLR 5 428 0 2002 248 58 67 chr3 117509716 117510317 -110014261 - MER21B-int LTR ERV1 -3581 610 14 2105 274 40 62 chr3 117510348 117511170 -110013408 - MER21B LTR ERV1 -48 815 12 22 0 0 0 chr3 117511702 117511724 -110012854 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 117511980 117512002 -110012576 + AT_rich Low_complexity Low_complexity 1 22 0 25 75 0 0 chr3 117512481 117512534 -110012044 + AT_rich Low_complexity Low_complexity 1 53 0 29 70 0 0 chr3 117513002 117513059 -110011519 + AT_rich Low_complexity Low_complexity 1 57 0 29 47 0 0 chr3 117513080 117513123 -110011455 + AT_rich Low_complexity Low_complexity 1 43 0 520 381 26 23 chr3 117513288 117513676 -110010902 + LTR16C LTR ERVL 82 470 -21 186 43 0 0 chr3 117513734 117513757 -110010821 + (CA)n Simple_repeat Simple_repeat 2 24 0 44 0 0 0 chr3 117514934 117514978 -110009600 + AT_rich Low_complexity Low_complexity 1 44 0 3098 181 17 2 chr3 117515162 117515985 -110008593 - L1P5 LINE L1 -351 5805 4973 2367 117 92 37 chr3 117515989 117516441 -110008137 + MLT2A1 LTR ERVL 1 515 0 2616 222 27 2 chr3 117516441 117517076 -110007502 - L1 LINE L1 -1174 4972 4322 * 7119 254 104 34 chr3 117517074 117517493 -110007085 + L1PA12 LINE L1 6 394 -7190 2307 59 0 7 chr3 117517493 117517824 -110006754 + AluY SINE Alu 1 329 0 7119 254 104 34 chr3 117517824 117521248 -110003330 + L1PA12 LINE L1 394 4132 -3452 2247 146 33 33 chr3 117521251 117521673 -110002905 + L1P4 LINE L1 4900 5328 -837 2157 122 0 0 chr3 117521673 117521976 -110002602 + AluSg SINE Alu 1 303 -7 2247 146 33 33 chr3 117521976 117522181 -110002397 + L1P4 LINE L1 5328 5531 -634 1083 250 31 149 chr3 117522182 117523309 -110001269 - L1PBb LINE L1 -4764 2084 999 529 352 25 22 chr3 117523413 117523737 -110000841 - L1PBb LINE L1 -5827 1022 698 684 358 68 68 chr3 117523853 117524460 -110000118 - L1PBb LINE L1 -6229 620 14 24 0 0 0 chr3 117524598 117524622 -109999956 + AT_rich Low_complexity Low_complexity 1 24 0 339 304 10 10 chr3 117525109 117525211 -109999367 - MIR SINE MIR -132 130 29 26 30 0 0 chr3 117525214 117525247 -109999331 + AT_rich Low_complexity Low_complexity 1 33 0 408 263 30 112 chr3 117525609 117525801 -109998777 - MIR SINE MIR -10 252 81 2089 119 0 7 chr3 117525801 117526094 -109998484 + AluSc SINE Alu 1 291 -18 408 263 30 112 chr3 117526094 117526133 -109998445 - MIR SINE MIR -181 81 40 26 30 0 0 chr3 117526315 117526348 -109998230 + AT_rich Low_complexity Low_complexity 1 33 0 2175 80 0 23 chr3 117526428 117526729 -109997849 - AluSg SINE Alu -16 294 1 27 49 0 0 chr3 117527268 117527309 -109997269 + AT_rich Low_complexity Low_complexity 1 41 0 212 274 0 0 chr3 117527985 117528036 -109996542 + MIR SINE MIR 101 151 -111 21 0 0 0 chr3 117530005 117530026 -109994552 + AT_rich Low_complexity Low_complexity 1 21 0 696 6 112 0 chr3 117530426 117530587 -109993991 + (TA)n Simple_repeat Simple_repeat 2 180 0 24 0 0 0 chr3 117530594 117530618 -109993960 + AT_rich Low_complexity Low_complexity 1 24 0 2469 56 0 0 chr3 117530880 117531182 -109993396 - MER11D LTR ERVK 0 897 596 421 0 0 20 chr3 117531181 117531232 -109993346 - MER11D LTR ERVK -847 50 1 * 2778 143 158 42 chr3 117531326 117532037 -109992541 - MER11A LTR ERVK 0 1266 474 259 283 0 94 chr3 117533187 117533293 -109991285 - Tigger8 DNA MER2_type -214 452 357 2230 109 0 0 chr3 117533305 117533599 -109990979 - AluSx SINE Alu -18 294 1 459 360 15 25 chr3 117534174 117534374 -109990204 + MIR SINE MIR 3 200 -62 365 214 0 0 chr3 117534551 117534635 -109989943 + L1MA9 LINE L1 6192 6275 -37 296 107 68 0 chr3 117535140 117535243 -109989335 + (TA)n Simple_repeat Simple_repeat 1 110 0 7300 42 15 0 chr3 117536834 117537912 -109986666 - L1PA5 LINE L1 -1 6153 5071 186 224 121 35 chr3 117537940 117537998 -109986580 + MIR SINE MIR 82 144 -64 2034 158 3 0 chr3 117538417 117538728 -109985850 - AluSx SINE Alu 0 312 1 192 400 0 0 chr3 117538847 117538922 -109985656 - L3 LINE CR1 -112 1465 1391 216 434 23 0 chr3 117538972 117539101 -109985477 - L2 LINE L2 -5 3267 3136 23 0 0 0 chr3 117540048 117540071 -109984507 + AT_rich Low_complexity Low_complexity 1 23 0 462 36 0 0 chr3 117540090 117540146 -109984432 + (TTA)n Simple_repeat Simple_repeat 2 57 0 1254 13 40 0 chr3 117540148 117540300 -109984278 - L1PA2 LINE L1 -13 6142 5985 1107 16 0 0 chr3 117540300 117540429 -109984149 + L1HS LINE L1 5844 5972 -183 1908 267 156 27 chr3 117542334 117543387 -109981191 - L1MC4 LINE L1 -155 7887 6699 243 191 0 48 chr3 117543428 117543491 -109981087 + CT-rich Low_complexity Low_complexity 1 60 0 339 298 71 12 chr3 117543498 117543666 -109980912 - L1MC4a LINE L1 -1249 6559 6382 3545 166 34 72 chr3 117543666 117544407 -109980171 + Ricksha_b DNA DNA 7 719 -535 3882 169 24 21 chr3 117544408 117544450 -109980128 - MER50 LTR ERV1 -23 711 671 1987 117 0 46 chr3 117544450 117544757 -109979821 - AluSg SINE Alu -17 293 1 3882 169 24 21 chr3 117544757 117545423 -109979155 - MER50 LTR ERV1 -63 671 1 1360 103 5 0 chr3 117545424 117545609 -109978969 - MER50-int LTR ERV1 -9 7196 7011 2400 176 47 10 chr3 117545617 117546129 -109978449 + Ricksha_b DNA DNA 716 1246 -8 226 170 19 38 chr3 117546136 117546189 -109978389 - L1MC4a LINE L1 -1413 6395 6344 * 261 245 91 35 chr3 117546184 117546327 -109978251 - L1ME3 LINE L1 -1 6161 6011 251 325 119 12 chr3 117546582 117546742 -109977836 - L1ME3A LINE L1 -39 6131 5955 707 282 63 19 chr3 117546765 117547081 -109977497 - L1ME3A LINE L1 -254 5916 5587 2064 155 7 0 chr3 117547091 117547401 -109977177 + MER1B DNA MER1_type 28 339 0 1262 214 88 9 chr3 117547524 117547842 -109976736 + MER2 DNA MER2_type 2 344 0 422 182 23 0 chr3 117547860 117547948 -109976630 - MLT1E3 LTR MaLR -2 622 533 1617 201 0 76 chr3 117548205 117548574 -109976004 - MLT2C2 LTR ERVL 0 464 124 325 247 12 0 chr3 117548564 117548645 -109975933 + MLT1E3 LTR MaLR 122 203 -421 * 408 40 0 0 chr3 117548728 117548778 -109975800 + (CA)n Simple_repeat Simple_repeat 2 51 0 1095 199 64 84 chr3 117548782 117549079 -109975499 - AluJo SINE Alu -10 292 2 22 56 0 0 chr3 117549079 117549115 -109975463 + AT_rich Low_complexity Low_complexity 1 36 0 365 165 37 165 chr3 117549447 117549503 -109975075 + L1MC1 LINE L1 6212 6249 -84 3953 98 24 3 chr3 117549503 117550077 -109974501 - L1PA11 LINE L1 -3 6171 5586 365 165 37 165 chr3 117550077 117550129 -109974449 + L1MC1 LINE L1 6249 6306 -27 27 73 0 0 chr3 117551349 117551404 -109973174 + AT_rich Low_complexity Low_complexity 1 55 0 21 57 0 0 chr3 117551442 117551477 -109973101 + AT_rich Low_complexity Low_complexity 1 35 0 198 71 0 0 chr3 117553846 117553874 -109970704 + (TA)n Simple_repeat Simple_repeat 2 29 0 210 298 0 0 chr3 117553925 117553982 -109970596 + (CA)n Simple_repeat Simple_repeat 2 58 0 514 341 254 21 chr3 117554344 117554922 -109969656 + L2 LINE L2 49 761 -2553 811 269 91 59 chr3 117554938 117555344 -109969234 + L2 LINE L2 2863 3281 -32 648 189 43 27 chr3 117556147 117556332 -109968246 + MER53 DNA DNA 1 188 -1 1232 159 70 0 chr3 117557195 117557299 -109967279 + MER30 DNA MER1_type 2 97 -133 186 71 0 0 chr3 117557299 117557327 -109967251 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1232 159 70 0 chr3 117557327 117557436 -109967142 + MER30 DNA MER1_type 97 230 0 23 33 0 0 chr3 117557825 117557855 -109966723 + AT_rich Low_complexity Low_complexity 1 30 0 184 313 25 25 chr3 117560386 117560466 -109964112 - L2 LINE L2 -13 3300 3221 207 403 0 0 chr3 117560659 117560736 -109963842 - L2 LINE L2 -336 2936 2860 1786 274 33 23 chr3 117560872 117561386 -109963192 - LTR40a LTR ERVL 0 519 1 209 345 148 61 chr3 117561388 117561977 -109962601 - L2 LINE L2 -593 2721 2082 451 211 0 0 chr3 117562545 117562640 -109961938 + L1MD3 LINE L1 7818 7912 -83 21 36 0 0 chr3 117563766 117563794 -109960784 + AT_rich Low_complexity Low_complexity 1 28 0 380 311 61 29 chr3 117563796 117564174 -109960404 + L1ME LINE L1 5296 5682 -439 12388 220 35 58 chr3 117564727 117567171 -109957407 - L1MA3 LINE L1 -71 6549 4051 482 114 13 0 chr3 117567171 117567250 -109957328 + MADE1 DNA Mariner 1 80 0 12388 220 35 58 chr3 117567250 117568986 -109955592 - L1MA3 LINE L1 -2569 4051 2277 607 216 119 46 chr3 117568986 117569180 -109955398 - LTR55 LTR ERV -340 208 1 12388 220 35 58 chr3 117569180 117569237 -109955341 - L1MA3 LINE L1 -4343 2277 2220 12116 131 14 6 chr3 117569237 117572014 -109952564 - L1PA8 LINE L1 0 6172 3384 12388 220 35 58 chr3 117572014 117574085 -109950493 - L1MA3 LINE L1 -4400 2220 2 21 57 0 0 chr3 117574666 117574701 -109949877 + AT_rich Low_complexity Low_complexity 1 35 0 206 148 12 62 chr3 117575318 117575399 -109949179 + (TA)n Simple_repeat Simple_repeat 2 78 0 293 250 0 22 chr3 117575399 117575491 -109949087 - L1MC4 LINE L1 -1339 6703 6614 * 298 253 0 0 chr3 117575415 117575494 -109949084 + L1MC4 LINE L1 6614 6692 -1350 2198 149 25 0 chr3 117578967 117579322 -109945256 + THE1B LTR MaLR 1 364 0 4354 26 25 0 chr3 117579750 117580281 -109944297 - L1PA4 LINE L1 -1 6154 5611 405 0 0 0 chr3 117580484 117580529 -109944049 + (TAGA)n Simple_repeat Simple_repeat 1 45 0 194 290 129 16 chr3 117581201 117581325 -109943253 - L2 LINE L2 -168 3145 3008 342 316 100 74 chr3 117581425 117581656 -109942922 - MIR SINE MIR -1 261 25 11345 242 42 34 chr3 117582410 117583390 -109941188 - L1PA16 LINE L1 -6 6811 5841 8022 52 10 0 chr3 117583390 117585178 -109939400 + L1PA5 LINE L1 4350 6153 -1 11345 242 42 34 chr3 117585178 117585195 -109939383 - L1PA16 LINE L1 -976 5841 5826 2210 69 0 75 chr3 117585195 117585528 -109939050 + AluY SINE Alu 1 308 -3 11345 242 42 34 chr3 117585528 117589918 -109934660 - L1PA16 LINE L1 -991 5826 1396 887 363 24 49 chr3 117590773 117591401 -109933177 - L1PA16 LINE L1 -6175 612 1 27 0 0 0 chr3 117591460 117591487 -109933091 + AT_rich Low_complexity Low_complexity 1 27 0 728 261 30 0 chr3 117591939 117592142 -109932436 - MER74A LTR ERVL 0 558 350 4317 244 54 13 chr3 117592147 117592573 -109932005 + L1MC3 LINE L1 4554 4961 -1185 1990 143 0 0 chr3 117592573 117592873 -109931705 + AluY SINE Alu 1 300 -11 4317 244 54 13 chr3 117592873 117594262 -109930316 + L1MC3 LINE L1 4961 5401 -745 276 215 31 0 chr3 117594264 117594329 -109930249 + Tigger2 DNA MER2_type 3 69 -2649 * 437 149 85 11 chr3 117594327 117594421 -109930157 + Tigger2 DNA MER2_type 2280 2380 -338 * 1068 180 51 14 chr3 117594402 117594619 -109929959 + Tigger2 DNA MER2_type 2484 2708 -10 4749 204 66 12 chr3 117594620 117595345 -109929233 + L1MC3 LINE L1 6581 7388 -397 414 57 0 0 chr3 117595345 117595398 -109929180 + (TA)n Simple_repeat Simple_repeat 2 54 0 4749 204 66 12 chr3 117595398 117595785 -109928793 + L1MC3 LINE L1 7388 7753 -32 29 70 0 0 chr3 117595832 117595889 -109928689 + AT_rich Low_complexity Low_complexity 1 57 0 302 157 0 29 chr3 117596094 117596164 -109928414 + CT-rich Low_complexity Low_complexity 1 68 0 2136 86 0 0 chr3 117596186 117596464 -109928114 - AluY SINE Alu -33 278 1 729 169 8 0 chr3 117597140 117597270 -109927308 - L1PB3 LINE L1 -2 6152 6022 21480 182 22 19 chr3 117597287 117602857 -109921721 - L1PA11 LINE L1 -3 7609 1215 22 35 0 0 chr3 117602991 117603020 -109921558 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr3 117603813 117603837 -109920741 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr3 117604909 117604940 -109919638 + AT_rich Low_complexity Low_complexity 1 31 0 268 240 0 45 chr3 117604940 117605041 -109919537 - L1MEc LINE L1 -4978 1649 1362 26 30 0 0 chr3 117605822 117605855 -109918723 + AT_rich Low_complexity Low_complexity 1 33 0 203 216 0 20 chr3 117606181 117606232 -109918346 + (TA)n Simple_repeat Simple_repeat 2 51 0 9203 214 41 16 chr3 117606567 117607541 -109917037 - L1PA16 LINE L1 -3 6163 5215 320 77 19 0 chr3 117607541 117607593 -109916985 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 9203 214 41 16 chr3 117607593 117609872 -109914706 - L1PA16 LINE L1 -951 5215 2817 2111 138 0 0 chr3 117609872 117610169 -109914409 - AluSc SINE Alu -12 297 1 9203 214 41 16 chr3 117610169 117610370 -109914208 - L1PA16 LINE L1 -3349 2817 2623 1036 289 168 30 chr3 117610422 117610608 -109913970 + L1ME3A LINE L1 2110 2269 -3877 1534 246 17 8 chr3 117610608 117610970 -109913608 + MLT1A1 LTR MaLR 1 365 0 1036 289 168 30 chr3 117610970 117612739 -109911839 + L1ME3A LINE L1 2269 4460 -1686 348 64 0 0 chr3 117612739 117612786 -109911792 + (CA)n Simple_repeat Simple_repeat 2 48 0 1036 289 168 30 chr3 117612786 117613224 -109911354 + L1ME3A LINE L1 4460 4836 -1310 786 299 102 10 chr3 117613352 117613743 -109910835 + L1ME3A LINE L1 5709 6135 -35 322 295 130 30 chr3 117614052 117614250 -109910328 + MIR SINE MIR 28 247 -15 2333 71 0 13 chr3 117614405 117614713 -109909865 + AluY SINE Alu 1 304 -7 21 82 0 0 chr3 117614726 117614775 -109909803 + AT_rich Low_complexity Low_complexity 1 49 0 288 70 0 0 chr3 117615468 117615511 -109909067 + (CA)n Simple_repeat Simple_repeat 2 44 0 202 321 62 12 chr3 117615598 117615679 -109908899 + L2 LINE L2 3008 3092 -221 40 49 0 0 chr3 117615708 117615769 -109908809 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr3 117616243 117616266 -109908312 + AT_rich Low_complexity Low_complexity 1 23 0 1083 277 147 9 chr3 117617613 117618042 -109906536 + L1MD2 LINE L1 5855 6342 -17 199 209 23 0 chr3 117618453 117618496 -109906082 + L2 LINE L2 3267 3310 -3 22 0 0 0 chr3 117619064 117619086 -109905492 + AT_rich Low_complexity Low_complexity 1 22 0 1183 254 83 24 chr3 117619196 117619360 -109905218 + L1ME1 LINE L1 5616 5769 -397 1552 221 32 58 chr3 117619360 117619858 -109904720 + MER31A LTR ERV1 1 485 0 1183 254 83 24 chr3 117619858 117620137 -109904441 + L1ME1 LINE L1 5769 6013 -153 22 35 0 0 chr3 117622480 117622509 -109902069 + AT_rich Low_complexity Low_complexity 1 29 0 2107 109 10 13 chr3 117623118 117623422 -109901156 - AluSx SINE Alu -9 303 1 21 0 0 0 chr3 117623432 117623453 -109901125 + AT_rich Low_complexity Low_complexity 1 21 0 2568 171 55 14 chr3 117623501 117624015 -109900563 - L1MA6 LINE L1 -22 6278 5744 1353 216 58 32 chr3 117624204 117624551 -109900027 + MLT1A1 LTR MaLR 10 365 0 210 191 0 0 chr3 117625239 117625286 -109899292 + (TA)n Simple_repeat Simple_repeat 1 47 0 2005 146 3 7 chr3 117625332 117625641 -109898937 - AluSx SINE Alu -4 308 1 35 41 0 0 chr3 117625678 117625727 -109898851 + AT_rich Low_complexity Low_complexity 1 49 0 1354 240 68 14 chr3 117627559 117627925 -109896653 - MLT1B LTR MaLR -2 388 3 1620 246 119 4 chr3 117627962 117628414 -109896164 + MLT1D LTR MaLR 1 504 -1 219 200 22 0 chr3 117628691 117628736 -109895842 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 1899 134 0 4 chr3 117628898 117629166 -109895412 - AluSq SINE Alu -23 290 24 319 345 117 31 chr3 117629542 117629832 -109894746 + L1M4 LINE L1 535 849 -5976 4380 170 25 12 chr3 117629913 117630729 -109893849 + LTR1B LTR ERV1 1 826 0 16868 171 32 23 chr3 117630753 117633791 -109890787 + HUERS-P2 LTR ERV1 25 3088 0 2965 149 86 4 chr3 117633791 117634316 -109890262 + LTR1B LTR ERV1 1 568 -258 352 284 42 21 chr3 117634328 117634518 -109890060 + L1M4 LINE L1 1468 1661 -4881 833 257 26 59 chr3 117634599 117634988 -109889590 + L1ME2 LINE L1 5785 6326 -8 1187 275 155 26 chr3 117635094 117636445 -109888133 + L1M4 LINE L1 4454 5982 -700 796 235 97 0 chr3 117637427 117637623 -109886955 + MER58A DNA MER1_type 7 221 -3 30 0 0 0 chr3 117638770 117638800 -109885778 + AT_rich Low_complexity Low_complexity 1 30 0 449 340 66 56 chr3 117638801 117639449 -109885129 - L1MCa LINE L1 -2377 4564 3910 21 0 0 0 chr3 117639454 117639475 -109885103 + AT_rich Low_complexity Low_complexity 1 21 0 246 225 42 0 chr3 117639509 117639580 -109884998 - L1MCa LINE L1 -3108 3833 3760 204 67 0 0 chr3 117639641 117639671 -109884907 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 243 238 122 79 chr3 117639672 117639861 -109884717 - L2 LINE L2 -5 3308 3112 241 289 187 13 chr3 117640009 117640138 -109884440 - L2 LINE L2 -306 2966 2836 185 108 27 0 chr3 117640792 117640829 -109883749 + (TAGA)n Simple_repeat Simple_repeat 3 40 0 21 71 0 0 chr3 117641099 117641141 -109883437 + AT_rich Low_complexity Low_complexity 1 42 0 2388 45 0 7 chr3 117641644 117641934 -109882644 - AluY SINE Alu -9 302 15 243 299 156 12 chr3 117643269 117643436 -109881142 - L1MCa LINE L1 -4309 2813 2623 939 278 62 61 chr3 117643517 117644458 -109880120 - L1MCa LINE L1 -4600 2522 1379 570 112 20 20 chr3 117644623 117644721 -109879857 - AluSg SINE Alu -212 98 1 1057 287 57 30 chr3 117644788 117645248 -109879330 - L1MCa LINE L1 -5138 1285 814 197 164 0 18 chr3 117645321 117645376 -109879202 + T-rich Low_complexity Low_complexity 2 55 0 190 164 36 0 chr3 117645547 117645602 -109878976 + GA-rich Low_complexity Low_complexity 1 57 0 23 33 0 0 chr3 117646462 117646492 -109878086 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 117646658 117646679 -109877899 + AT_rich Low_complexity Low_complexity 1 21 0 665 79 32 48 chr3 117647062 117647188 -109877390 - L1P LINE L1 -1783 4363 4240 255 344 61 0 chr3 117647695 117647826 -109876752 + MIR SINE MIR 87 225 -37 4498 180 81 15 chr3 117648048 117648350 -109876228 - L1PB4 LINE L1 -44 6112 5831 509 33 55 22 chr3 117648350 117648441 -109876137 + (TAGA)n Simple_repeat Simple_repeat 1 94 0 4498 180 81 15 chr3 117648441 117649753 -109874825 - L1PB4 LINE L1 -325 5831 4384 2369 219 8 2 chr3 117649750 117650261 -109874317 + L1 LINE L1 3730 4243 -1903 * 260 88 29 103 chr3 117651608 117651676 -109872902 + MLT1C LTR MaLR 401 463 -4 37 92 0 0 chr3 117651695 117651771 -109872807 + AT_rich Low_complexity Low_complexity 1 76 0 23 0 0 0 chr3 117651854 117651877 -109872701 + AT_rich Low_complexity Low_complexity 1 23 0 1512 176 48 45 chr3 117652248 117652622 -109871956 + THE1C LTR MaLR 1 375 0 220 327 168 9 chr3 117654628 117654741 -109869837 + MIR SINE MIR 16 146 -62 1904 207 75 41 chr3 117654754 117655237 -109869341 + MLT1D LTR MaLR 7 505 0 321 269 55 60 chr3 117657626 117657808 -109866770 + L1ME LINE L1 5266 5446 -675 216 135 0 0 chr3 117659911 117659948 -109864630 + (TA)n Simple_repeat Simple_repeat 1 37 0 21 0 0 0 chr3 117660689 117660710 -109863868 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 117661047 117661078 -109863500 + AT_rich Low_complexity Low_complexity 1 31 0 24 53 0 0 chr3 117661319 117661357 -109863221 + AT_rich Low_complexity Low_complexity 1 38 0 253 222 14 28 chr3 117662641 117662713 -109861865 + (TAGA)n Simple_repeat Simple_repeat 1 71 0 228 284 136 34 chr3 117663224 117663312 -109861266 - MIR3 SINE MIR -97 111 15 206 250 0 0 chr3 117663863 117663899 -109860679 + MER5B DNA MER1_type 126 161 -17 434 242 140 13 chr3 117663942 117664099 -109860479 + MER5B DNA MER1_type 2 178 0 21 0 0 0 chr3 117665277 117665298 -109859280 + AT_rich Low_complexity Low_complexity 1 21 0 34 0 0 0 chr3 117665992 117666026 -109858552 + AT_rich Low_complexity Low_complexity 1 34 0 799 284 64 42 chr3 117666173 117666628 -109857950 + MLT1C LTR MaLR 1 465 -2 29 28 0 0 chr3 117666643 117666679 -109857899 + AT_rich Low_complexity Low_complexity 1 36 0 438 243 30 30 chr3 117666904 117667073 -109857505 + THE1C LTR MaLR 198 366 -9 436 323 132 17 chr3 117667418 117667653 -109856925 - MIR SINE MIR 0 262 1 932 203 123 44 chr3 117668364 117668680 -109855898 - Charlie7 DNA MER1_type -818 1794 1454 1340 294 96 28 chr3 117668722 117669266 -109855312 + L2 LINE L2 1716 2296 -1018 232 274 24 0 chr3 117669276 117669360 -109855218 + L1MC4 LINE L1 6616 6701 -1341 376 346 44 31 chr3 117669391 117669619 -109854959 + L2 LINE L2 2311 2541 -773 1666 217 71 7 chr3 117669639 117670045 -109854533 + MSTB1 LTR MaLR 1 432 0 1152 279 40 15 chr3 117670144 117670470 -109854108 + MLT1G LTR MaLR 255 588 -2 461 303 66 53 chr3 117670650 117671030 -109853548 - Charlie7 DNA MER1_type -1930 682 298 * 609 233 86 11 chr3 117671026 117671393 -109853185 - MLT1E1 LTR MaLR -217 407 3 228 327 79 24 chr3 117671495 117671660 -109852918 - Charlie7 DNA MER1_type -2436 176 3 2538 208 95 2 chr3 117671725 117672263 -109852315 - LTR69 LTR ERVL 0 588 1 193 271 51 0 chr3 117672311 117672370 -109852208 + L2 LINE L2 3252 3313 0 491 263 45 58 chr3 117673782 117673938 -109850640 - MER63A DNA MER1_type -5 205 52 2220 65 3 0 chr3 117674076 117674383 -109850195 + PABL_A-int LTR ERV1 1350 1657 -3358 1851 139 0 0 chr3 117674383 117674677 -109849901 - L1PB1 LINE L1 -2 6149 5856 261 0 0 0 chr3 117674692 117674721 -109849857 + (CA)n Simple_repeat Simple_repeat 2 30 0 2439 123 11 8 chr3 117674721 117675094 -109849484 - L1PB1 LINE L1 -365 5786 5410 10993 198 32 29 chr3 117675243 117675600 -109848978 - L1 LINE L1 -3494 4071 3717 1392 204 7 17 chr3 117675600 117675889 -109848689 - AluJo SINE Alu -26 286 1 10993 198 32 29 chr3 117675889 117677046 -109847532 - L1 LINE L1 -3848 3717 2565 7700 199 30 16 chr3 117677046 117678478 -109846100 - L1PA13 LINE L1 -11 6152 4741 5447 96 45 20 chr3 117678478 117679284 -109845294 + LTR12 LTR ERV1 1 826 0 7700 199 30 16 chr3 117679284 117679325 -109845253 - L1PA13 LINE L1 -1422 4741 4702 1670 193 21 0 chr3 117679325 117679615 -109844963 + AluJb SINE Alu 1 296 -16 7700 199 30 16 chr3 117679615 117680622 -109843956 - L1PA13 LINE L1 -1461 4702 3643 10993 198 32 29 chr3 117680622 117681414 -109843164 - L1 LINE L1 -5000 2565 1777 225 0 0 0 chr3 117681414 117681439 -109843139 + (TC)n Simple_repeat Simple_repeat 2 26 0 10993 198 32 29 chr3 117681439 117682502 -109842076 - L1 LINE L1 -5788 1777 12 22 0 0 0 chr3 117682808 117682830 -109841748 + AT_rich Low_complexity Low_complexity 1 22 0 228 100 0 0 chr3 117682830 117682860 -109841718 - Alu SINE Alu -15 284 255 1254 176 29 0 chr3 117682913 117683157 -109841421 + L1MA8 LINE L1 5735 5985 -306 3180 207 89 75 chr3 117683316 117685138 -109839440 + L1MB7 LINE L1 4060 5911 -273 1535 112 185 8 chr3 117685150 117685399 -109839179 - AluSg1 SINE Alu -14 295 3 27 0 0 0 chr3 117685520 117685547 -109839031 + AT_rich Low_complexity Low_complexity 1 27 0 341 290 55 59 chr3 117686580 117686786 -109837792 - MLT1L LTR MaLR -29 586 356 21 0 0 0 chr3 117687009 117687030 -109837548 + AT_rich Low_complexity Low_complexity 1 21 0 2217 76 33 7 chr3 117687990 117688293 -109836285 - AluY SINE Alu 0 311 1 1857 166 0 0 chr3 117688439 117688743 -109835835 + AluJb SINE Alu 1 304 0 23 33 0 0 chr3 117688905 117688935 -109835643 + AT_rich Low_complexity Low_complexity 1 30 0 1079 232 63 28 chr3 117689920 117690205 -109834373 + MLT1B LTR MaLR 1 295 -95 1071 66 0 44 chr3 117691005 117691187 -109833391 + LTR7 LTR ERV1 275 448 -2 595 184 10 0 chr3 117691192 117691290 -109833288 - MER2 DNA MER2_type -246 99 1 203 341 12 0 chr3 117691346 117691428 -109833150 - MIR SINE MIR -114 148 66 871 133 53 0 chr3 117691444 117691643 -109832935 + L1PA10 LINE L1 5989 6195 0 366 22 0 0 chr3 117691791 117691837 -109832741 - MADE1 DNA Mariner -34 46 1 295 200 35 117 chr3 117691890 117692035 -109832543 - LTR47B LTR ERVL -32 411 279 586 184 218 14 chr3 117692882 117693029 -109831549 - MER20 DNA MER1_type -1 218 42 251 313 15 0 chr3 117693116 117693183 -109831395 + MER20 DNA MER1_type 145 212 -7 22 0 0 0 chr3 117694675 117694697 -109829881 + AT_rich Low_complexity Low_complexity 1 22 0 345 125 0 0 chr3 117695355 117695411 -109829167 + (TA)n Simple_repeat Simple_repeat 1 56 0 332 202 0 11 chr3 117695410 117695465 -109829113 + GA-rich Low_complexity Low_complexity 2 57 -37 * 1316 223 45 28 chr3 117695465 117695824 -109828754 + MLT1A1 LTR MaLR 1 365 0 332 202 0 11 chr3 117695824 117695862 -109828716 + GA-rich Low_complexity Low_complexity 57 94 0 1397 199 22 18 chr3 117696288 117696560 -109828018 + AluJo SINE Alu 3 275 -37 38 39 0 0 chr3 117696717 117696769 -109827809 + AT_rich Low_complexity Low_complexity 1 52 0 888 28 0 0 chr3 117696783 117696890 -109827688 + (TA)n Simple_repeat Simple_repeat 1 107 0 905 223 82 35 chr3 117697135 117697417 -109827161 - MLT1B LTR MaLR -95 295 1 377 390 96 19 chr3 117699337 117699547 -109825031 + L2 LINE L2 2809 3001 -271 264 30 0 0 chr3 117699547 117699580 -109824998 + (TTG)n Simple_repeat Simple_repeat 2 34 0 377 390 96 19 chr3 117699580 117699797 -109824781 + L2 LINE L2 3001 3269 -3 1700 189 37 20 chr3 117701155 117701504 -109823074 + THE1C LTR MaLR 19 373 -2 1052 244 8 110 chr3 117701517 117701907 -109822671 - MLT1D LTR MaLR -147 358 9 21 36 0 0 chr3 117702489 117702517 -109822061 + AT_rich Low_complexity Low_complexity 1 28 0 30 27 0 0 chr3 117703581 117703618 -109820960 + AT_rich Low_complexity Low_complexity 1 37 0 210 264 115 0 chr3 117704147 117704234 -109820344 - MIR SINE MIR -71 191 95 320 328 88 0 chr3 117704953 117705145 -109819433 - L1ME3A LINE L1 -219 5951 5743 208 298 19 0 chr3 117705150 117705254 -109819324 + (TTG)n Simple_repeat Simple_repeat 3 108 0 2085 229 105 9 chr3 117706129 117706805 -109817773 - Charlie1a DNA MER1_type -205 1250 510 642 213 88 0 chr3 117706931 117707067 -109817511 - Charlie1a DNA MER1_type -1238 217 70 205 267 15 37 chr3 117707170 117707305 -109817273 + (TA)n Simple_repeat Simple_repeat 2 133 0 31 68 0 0 chr3 117708284 117708343 -109816235 + AT_rich Low_complexity Low_complexity 1 59 0 226 160 40 0 chr3 117708861 117708911 -109815667 - MLT1D LTR MaLR -25 480 429 748 272 80 5 chr3 117708921 117709145 -109815433 + MER34 LTR ERV1 11 251 -291 778 114 147 11 chr3 117709312 117709496 -109815082 - HERVH LTR ERV1 -6864 849 641 4967 112 19 0 chr3 117709497 117710248 -109814330 - HERVH LTR ERV1 -6948 765 1 2416 100 68 23 chr3 117710250 117710679 -109813899 - LTR7 LTR ERV1 -2 448 1 2455 79 48 13 chr3 117710679 117711058 -109813520 - HERVH LTR ERV1 0 7713 7322 1326 125 18 22 chr3 117711056 117711280 -109813298 - HERVH LTR ERV1 -1894 5819 5597 * 4099 143 22 1 chr3 117711277 117711926 -109812652 - HERVH LTR ERV1 -2564 5149 4488 3198 115 14 4 chr3 117711928 117712425 -109812153 - HERVH LTR ERV1 -3720 3993 3492 870 149 20 0 chr3 117712415 117712563 -109812015 - HERVH LTR ERV1 -4423 3290 3140 * 3470 104 0 10 chr3 117712557 117713078 -109811500 - HERVH LTR ERV1 -4726 2987 2472 2167 125 48 0 chr3 117713198 117713533 -109811045 - THE1C LTR MaLR -24 351 1 204 306 14 14 chr3 117713936 117714008 -109810570 - MIR3 SINE MIR -23 185 114 1961 282 59 22 chr3 117715167 117715723 -109808855 + MLT1E LTR MaLR 1 577 -16 539 264 31 69 chr3 117716049 117716337 -109808241 + L1M3e LINE L1 1337 1613 -5417 1078 219 34 61 chr3 117716341 117716669 -109807909 - MLT2B3 LTR ERVL -8 546 228 1043 205 18 25 chr3 117716775 117717053 -109807525 + L1MB1 LINE L1 5067 5342 -804 1000 198 18 48 chr3 117717059 117717286 -109807292 + AluJo SINE Alu 16 235 -77 925 179 20 26 chr3 117717288 117717483 -109807095 + L1MB1 LINE L1 5360 5553 -738 1602 148 34 80 chr3 117717766 117718091 -109806487 + AluSx SINE Alu 1 310 -2 330 279 80 73 chr3 117718093 117718380 -109806198 + L1MEc LINE L1 1344 1632 -4764 346 337 31 10 chr3 117718384 117718577 -109806001 + L1MEc LINE L1 1699 1895 -4501 2100 255 94 49 chr3 117718838 117719778 -109804800 + L1MEc LINE L1 2184 3180 -3035 1728 177 0 29 chr3 117719778 117720088 -109804490 + AluJb SINE Alu 12 312 0 2100 255 94 49 chr3 117720088 117720693 -109803885 + L1MEc LINE L1 3180 3757 -2458 1480 209 15 0 chr3 117720759 117721032 -109803546 + AluJb SINE Alu 14 290 -22 317 303 41 16 chr3 117721067 117721189 -109803389 + L1MEc LINE L1 3876 4000 -2215 605 166 3 2 chr3 117721695 117721819 -109802759 - L1MB1 LINE L1 -221 5943 5823 1161 184 37 0 chr3 117721820 117722038 -109802540 + L1MB1 LINE L1 5934 6159 -30 473 271 99 34 chr3 117722136 117722398 -109802180 - LTR43 LTR ERV1 -144 458 180 261 0 0 0 chr3 117722733 117722762 -109801816 + (CA)n Simple_repeat Simple_repeat 1 29 0 814 352 68 11 chr3 117722766 117723329 -109801249 - HERV16 LTR ERVL -742 4951 4312 864 282 32 0 chr3 117723375 117723591 -109800987 - MER58A DNA MER1_type -1 223 1 616 329 8 32 chr3 117723876 117724125 -109800453 - HERV16 LTR ERVL -2165 2831 2589 2833 316 75 32 chr3 117724150 117726193 -109798385 - HERV16 LTR ERVL -2757 2239 47 261 0 0 0 chr3 117726716 117726745 -109797833 + (T)n Simple_repeat Simple_repeat 1 29 0 936 331 98 41 chr3 117726755 117727841 -109796737 + L2 LINE L2 2150 3305 -8 39 68 0 0 chr3 117728305 117728379 -109796199 + AT_rich Low_complexity Low_complexity 1 74 0 34635 112 12 9 chr3 117728744 117734878 -109789700 - L1PA6 LINE L1 0 6154 11 924 324 113 43 chr3 117734891 117735077 -109789501 - L2 LINE L2 -11 3302 3130 189 74 0 0 chr3 117735077 117735104 -109789474 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 924 324 113 43 chr3 117735104 117735677 -109788901 - L2 LINE L2 -183 3130 2505 873 262 0 8 chr3 117737434 117737686 -109786892 + L1M3 LINE L1 3424 3673 -2473 * 3158 237 51 34 chr3 117737676 117739020 -109785558 + L1M3 LINE L1 4076 5448 -732 3818 145 24 2 chr3 117739020 117739639 -109784939 + Tigger1 DNA MER2_type 564 1196 -1222 16434 203 32 27 chr3 117739649 117740039 -109784539 + L1PA13 LINE L1 882 1269 -5545 180 0 0 0 chr3 117740039 117740059 -109784519 + (CTG)n Simple_repeat Simple_repeat 1 20 0 16434 203 32 27 chr3 117740059 117744349 -109780229 + L1PA13 LINE L1 1269 5597 -1217 3196 99 16 2 chr3 117744349 117744795 -109779783 - MLT2A2 LTR ERVL 0 453 2 16434 203 32 27 chr3 117744795 117746020 -109778558 + L1PA13 LINE L1 5597 6814 0 26 0 0 0 chr3 117746020 117746046 -109778532 + AT_rich Low_complexity Low_complexity 1 26 0 5425 164 70 11 chr3 117746046 117747093 -109777485 + Tigger1 DNA MER2_type 1310 2417 -1 353 326 41 61 chr3 117747562 117747807 -109776771 - MIR SINE MIR -11 251 12 24 32 0 0 chr3 117748279 117748310 -109776268 + AT_rich Low_complexity Low_complexity 1 31 0 1421 171 15 2 chr3 117748648 117748915 -109775663 + L1PA16 LINE L1 5867 6144 -22 8796 219 6 25 chr3 117749100 117749115 -109775463 - L1 LINE L1 -846 5300 5286 198 0 0 0 chr3 117749115 117749137 -109775441 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 8796 219 6 25 chr3 117749137 117751366 -109773212 - L1 LINE L1 -860 5286 3099 5299 211 75 8 chr3 117751348 117753491 -109771087 - L1PBa LINE L1 -4425 2438 6 * 1599 193 63 39 chr3 117754304 117754735 -109769843 - MER65A LTR ERV1 0 445 5 1482 269 72 4 chr3 117754801 117755270 -109769308 - MER65A-int LTR ERV1 -111 4760 4260 348 77 0 0 chr3 117755800 117755852 -109768726 + (TA)n Simple_repeat Simple_repeat 2 53 0 669 205 22 10 chr3 117755981 117756135 -109768443 - HUERS-P3 LTR ERV1 -107 8812 6828 16477 127 12 3 chr3 117756434 117756449 -109768129 - HUERS-P3 LTR ERV1 -473 6945 6932 402 57 0 0 chr3 117756449 117756502 -109768076 + (AATAG)n Simple_repeat Simple_repeat 2 54 0 16477 127 12 3 chr3 117756502 117758994 -109765584 - HUERS-P3 LTR ERV1 -486 6932 4417 7044 119 15 22 chr3 117758994 117760125 -109764453 - HUERS-P3 LTR ERV1 -3220 4198 3076 2356 205 32 2 chr3 117760128 117760562 -109764016 + LTR8 LTR ERV1 1 447 -244 3747 86 25 0 chr3 117760562 117761073 -109763505 - MER65A-int LTR ERV1 -4780 2638 2115 * 7725 208 35 52 chr3 117761071 117762351 -109762227 - MER65A-int LTR ERV1 -5536 1882 655 309 26 0 0 chr3 117762351 117762389 -109762189 + (GA)n Simple_repeat Simple_repeat 1 38 0 7725 208 35 52 chr3 117762389 117762965 -109761613 - MER65A-int LTR ERV1 -6763 655 70 591 134 17 47 chr3 117762973 117763101 -109761477 - LTR9B LTR ERV1 -488 124 4 894 207 79 107 chr3 117763236 117763813 -109760765 - MER65A-int LTR ERV1 -1455 5143 4032 195 100 0 0 chr3 117763914 117763944 -109760634 + (A)n Simple_repeat Simple_repeat 1 30 0 677 179 22 38 chr3 117763945 117764129 -109760449 - MER65A-int LTR ERV1 -2686 3912 3732 636 158 33 57 chr3 117764256 117764426 -109760152 - MER65A-int LTR ERV1 -2368 4308 3585 3109 136 26 6 chr3 117764430 117764931 -109759647 - MER9 LTR ERVK 0 511 1 30461 92 6 4 chr3 117764931 117769309 -109755269 - HERVK9 LTR ERVK 0 8032 1626 4166 113 40 18 chr3 117769305 117769958 -109754620 - HERVK9 LTR ERVK -5249 667 1 * 3315 126 14 8 chr3 117769958 117770466 -109754112 - MER9 LTR ERVK 0 511 1 2136 95 7 0 chr3 117770482 117770755 -109753823 + AluSc SINE Alu 3 277 -32 216 0 0 0 chr3 117770758 117770782 -109753796 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 22 35 0 0 chr3 117770948 117770977 -109753601 + AT_rich Low_complexity Low_complexity 1 29 0 816 187 43 151 chr3 117771073 117771820 -109752758 - MER65A-int LTR ERV1 -2560 2563 1607 458 231 56 0 chr3 117772021 117772164 -109752414 - MER65A-int LTR ERV1 -2431 2440 2290 292 207 24 37 chr3 117772172 117772254 -109752324 - MER65A-int LTR ERV1 -3339 1597 1517 1912 210 92 92 chr3 117772309 117773003 -109751575 - LTR8A LTR ERV1 0 727 34 682 214 101 100 chr3 117773026 117773414 -109751164 - MER65A-int LTR ERV1 -2918 1953 1474 1841 132 48 0 chr3 117773414 117773686 -109750892 + AluSx SINE Alu 20 304 -8 682 214 101 100 chr3 117773686 117773869 -109750709 - MER65A-int LTR ERV1 -3397 1474 1293 256 197 0 66 chr3 117773970 117774046 -109750532 - MER65A-int LTR ERV1 -3878 993 923 252 291 74 27 chr3 117774046 117774118 -109750460 - LTR57-int LTR ERVL -4797 546 392 390 248 14 91 chr3 117774164 117774379 -109750199 - MER65A-int LTR ERV1 -4017 946 651 862 276 88 62 chr3 117774612 117775225 -109749353 - MER65A-int LTR ERV1 -4232 639 11 1564 201 10 98 chr3 117775237 117775719 -109748859 - MER65A LTR ERV1 -5 440 1 2096 118 0 29 chr3 117776033 117776347 -109748231 - AluSx SINE Alu -7 305 1 593 333 68 0 chr3 117776444 117776678 -109747900 + MIR SINE MIR 13 262 0 1425 150 86 64 chr3 117777018 117777377 -109747201 + THE1C LTR MaLR 1 367 -8 338 214 28 6 chr3 117777389 117777477 -109747101 + MIR SINE MIR 74 162 -46 1228 200 9 64 chr3 117778256 117778586 -109745992 - AluJb SINE Alu 0 312 1 1492 211 7 3 chr3 117778654 117778958 -109745620 - AluJo SINE Alu -7 305 1 258 369 56 31 chr3 117779172 117779311 -109745267 + MIR SINE MIR 3 148 -114 3947 166 67 3 chr3 117779311 117780045 -109744533 + LTR39 LTR ERV1 1 781 -2 258 369 56 31 chr3 117780045 117780065 -109744513 + MIR SINE MIR 148 166 -96 23 54 0 0 chr3 117780250 117780287 -109744291 + AT_rich Low_complexity Low_complexity 1 37 0 284 220 22 44 chr3 117782111 117782202 -109742376 + MER4D LTR ERV1 784 872 -31 2203 171 46 141 chr3 117782455 117783200 -109741378 - LTR8A LTR ERV1 0 727 18 3120 156 67 20 chr3 117783201 117783847 -109740731 + L1MA3 LINE L1 5630 6305 0 749 180 18 0 chr3 117783886 117784053 -109740525 - L1MA4A LINE L1 0 7005 6836 9299 193 28 17 chr3 117784055 117787005 -109737573 - L1MA4A LINE L1 -277 6728 1900 29020 133 11 54 chr3 117787015 117792001 -109732577 + L1PA7 LINE L1 9 4650 -1504 246 32 0 0 chr3 117792001 117792032 -109732546 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 29020 133 11 54 chr3 117792032 117793465 -109731113 + L1PA7 LINE L1 4650 6143 -11 7132 246 87 6 chr3 117793472 117795234 -109729344 - L1MA4A LINE L1 -4941 1908 4 795 262 136 55 chr3 117795318 117795886 -109728692 + L1ME3 LINE L1 5377 5990 -172 721 287 110 39 chr3 117796378 117797392 -109727186 + L1ME3A LINE L1 2153 3204 -3011 24 77 0 0 chr3 117797591 117797643 -109726935 + AT_rich Low_complexity Low_complexity 1 52 0 408 313 32 8 chr3 117797673 117797919 -109726659 + L1ME3A LINE L1 3596 3847 -2368 314 253 99 54 chr3 117797942 117798163 -109726415 + L1ME3A LINE L1 4646 4876 -1339 262 327 13 0 chr3 117798319 117798472 -109726106 + L1ME3A LINE L1 5094 5248 -967 1934 162 93 18 chr3 117798472 117798696 -109725882 - MSTA LTR MaLR 0 428 222 503 103 26 0 chr3 117798696 117798774 -109725804 + MADE1 DNA Mariner 1 80 0 1934 162 93 18 chr3 117798774 117798945 -109725633 - MSTA LTR MaLR -206 222 3 11532 222 36 29 chr3 117798994 117799096 -109725482 + L1MA2 LINE L1 16 116 -7449 234 0 0 0 chr3 117799096 117799122 -109725456 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 11532 222 36 29 chr3 117799122 117804962 -109719616 + L1MA2 LINE L1 116 5910 -1655 1702 167 0 4 chr3 117804962 117805226 -109719352 + AluSx SINE Alu 1 263 -49 11532 222 36 29 chr3 117805226 117805239 -109719339 + L1MA2 LINE L1 5910 5921 -1644 180 0 0 0 chr3 117805239 117805259 -109719319 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 11532 222 36 29 chr3 117805259 117805598 -109718980 + L1MA2 LINE L1 5921 6745 -820 9430 199 130 7 chr3 117805613 117807901 -109716677 + L1PB1 LINE L1 6 2574 -4289 4693 133 7 11 chr3 117807901 117808620 -109715958 + HUERS-P3 LTR ERV1 8203 8918 -1 2839 161 68 12 chr3 117808620 117809124 -109715454 + LTR9 LTR ERV1 1 532 -80 5632 206 94 10 chr3 117809127 117812120 -109712458 + L1PB1 LINE L1 2617 6141 -726 2248 91 0 0 chr3 117812120 117812407 -109712171 + AluSc SINE Alu 11 297 -12 5632 206 94 10 chr3 117812407 117812799 -109711779 + L1PB1 LINE L1 6141 6499 -368 250 238 0 0 chr3 117812809 117812872 -109711706 - L1MC4 LINE L1 -1340 6702 6640 2021 170 3 0 chr3 117812877 117813242 -109711336 + L1PB1 LINE L1 6498 6863 -4 6238 121 11 2 chr3 117813258 117814231 -109710347 + L1MA2 LINE L1 6742 7723 0 1013 315 91 12 chr3 117814354 117814530 -109710048 + L1ME3A LINE L1 5328 5489 -750 393 70 0 0 chr3 117814530 117814587 -109709991 + (CA)n Simple_repeat Simple_repeat 1 57 0 1013 315 91 12 chr3 117814587 117815003 -109709575 + L1ME3A LINE L1 5489 5967 -272 1200 248 8 48 chr3 117815003 117815358 -109709220 + MLT2C1 LTR ERVL 1 341 -56 25 0 0 0 chr3 117815384 117815409 -109709169 + AT_rich Low_complexity Low_complexity 1 25 0 201 147 0 0 chr3 117815418 117815452 -109709126 + (CA)n Simple_repeat Simple_repeat 2 35 0 551 274 57 41 chr3 117815503 117815748 -109708830 + L1ME3A LINE L1 5982 6230 -9 2105 103 3 0 chr3 117815978 117816287 -109708291 - AluSp SINE Alu 0 310 1 315 304 82 30 chr3 117816313 117816448 -109708130 - LTR50 LTR ERVL -629 166 25 188 250 36 0 chr3 117816485 117816541 -109708037 + MIR SINE MIR 174 231 -31 351 319 71 16 chr3 117817039 117817221 -109707357 - MLT1I LTR MaLR -26 383 192 21 0 0 0 chr3 117817480 117817501 -109707077 + AT_rich Low_complexity Low_complexity 1 21 0 497 305 6 6 chr3 117817670 117817834 -109706744 + L1MA9 LINE L1 11 174 -5781 7818 256 57 21 chr3 117817849 117819158 -109705420 + L1MA9 LINE L1 283 1543 -4491 2328 65 0 16 chr3 117819158 117819467 -109705111 + AluY SINE Alu 1 304 -7 415 54 0 0 chr3 117819476 117819532 -109705046 + L1PA5 LINE L1 6099 6154 0 7818 256 57 21 chr3 117819532 117822432 -109702146 + L1MA9 LINE L1 1550 4460 -1574 1662 208 58 13 chr3 117822440 117822819 -109701759 + L1MA9 LINE L1 5286 5681 -519 12327 147 38 11 chr3 117822846 117825001 -109699577 - Tigger1 DNA MER2_type 0 2418 207 426 165 59 0 chr3 117825017 117825102 -109699476 - Tigger1 DNA MER2_type -2327 91 2 2207 194 24 58 chr3 117825127 117825677 -109698901 + L1MA9 LINE L1 5670 6200 0 1592 258 108 47 chr3 117825862 117826545 -109698033 - MER50 LTR ERV1 0 734 10 314 360 42 0 chr3 117827641 117827830 -109696748 - L1M4 LINE L1 -1621 4525 4329 375 348 36 25 chr3 117827886 117828162 -109696416 - L1M4 LINE L1 -1923 4223 3945 309 297 55 21 chr3 117828265 117828410 -109696168 - L1M4 LINE L1 -2215 3931 3782 582 234 120 0 chr3 117828567 117828734 -109695844 + MER34C LTR ERV1 31 217 -368 245 220 0 0 chr3 117828763 117828822 -109695756 + LTR48 LTR ERV1 379 437 -350 251 125 42 0 chr3 117828822 117828870 -109695708 + T-rich Low_complexity Low_complexity 4 53 0 362 214 151 16 chr3 117828921 117829108 -109695470 + LTR48 LTR ERV1 437 539 -3 303 286 11 0 chr3 117829209 117829300 -109695278 + MIR SINE MIR 144 235 -27 568 349 62 36 chr3 117829317 117829767 -109694811 - L2 LINE L2 -2127 1187 726 481 143 20 20 chr3 117829781 117829879 -109694699 + MER4A LTR ERV1 1 98 -566 1587 178 18 19 chr3 117829879 117830225 -109694353 + MER4A LTR ERV1 261 664 0 2137 139 318 13 chr3 117830228 117830754 -109693824 + MER4A-int LTR ERV1 1 686 -5912 1332 236 66 7 chr3 117830916 117831251 -109693327 + MER4A-int LTR ERV1 1852 2527 -3736 5424 122 85 18 chr3 117831265 117832161 -109692417 + PABL_A-int LTR ERV1 194 1149 -5609 315 0 0 0 chr3 117832161 117832196 -109692382 + (TG)n Simple_repeat Simple_repeat 2 36 0 2988 138 90 66 chr3 117832215 117832901 -109691677 + PABL_A-int LTR ERV1 947 1649 -3366 1258 146 103 0 chr3 117832902 117833135 -109691443 - LTR8 LTR ERV1 -434 257 1 3160 163 121 15 chr3 117833135 117833990 -109690588 + PABL_A-int LTR ERV1 2737 3681 -2917 * 5601 114 57 25 chr3 117833989 117834973 -109689605 + PABL_A-int LTR ERV1 3837 4851 -1747 763 169 15 15 chr3 117834973 117835103 -109689475 + MER4A LTR ERV1 535 664 0 470 315 86 45 chr3 117835312 117835753 -109688825 - L1M4 LINE L1 -3546 2600 2142 902 232 45 5 chr3 117835879 117836099 -109688479 - L1MC1 LINE L1 -13 6320 6092 852 213 7 0 chr3 117836101 117836256 -109688322 - FRAM SINE Alu -23 153 1 1067 158 0 0 chr3 117836278 117836442 -109688136 + AluSg/x SINE Alu 136 299 -13 1721 174 19 16 chr3 117836615 117836936 -109687642 - Tigger2 DNA MER2_type -10 2708 2387 3562 74 20 6 chr3 117837084 117837572 -109687006 - L1PA13 LINE L1 -294 5874 5380 2057 84 27 0 chr3 117837572 117837867 -109686711 + L1PA13 LINE L1 5858 6162 -1 381 312 91 30 chr3 117837988 117838449 -109686129 + L1M4 LINE L1 2962 3450 -2696 357 220 74 136 chr3 117840083 117840488 -109684090 + L1ME4a LINE L1 5701 6080 -41 31 44 0 0 chr3 117841573 117841618 -109682960 + AT_rich Low_complexity Low_complexity 1 45 0 231 190 25 13 chr3 117841675 117841754 -109682824 + CT-rich Low_complexity Low_complexity 2 81 0 195 42 0 0 chr3 117842165 117842189 -109682389 + (TTTAA)n Simple_repeat Simple_repeat 3 26 0 2519 234 37 7 chr3 117843668 117844261 -109680317 - MER90 LTR ERV1 -2 612 2 192 211 0 0 chr3 117844262 117844300 -109680278 + L2 LINE L2 508 545 -2769 2125 113 3 0 chr3 117844930 117845261 -109679317 - AluSp SINE Alu 0 332 1 1879 185 42 37 chr3 117845471 117846021 -109678557 - MLT2A2 LTR ERVL 0 554 1 208 121 0 0 chr3 117846181 117846214 -109678364 + (CA)n Simple_repeat Simple_repeat 1 33 0 26 50 0 0 chr3 117847128 117847168 -109677410 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr3 117847211 117847239 -109677339 + AT_rich Low_complexity Low_complexity 1 28 0 2062 115 0 3 chr3 117847239 117847527 -109677051 - AluSg SINE Alu -23 287 1 352 322 79 40 chr3 117847886 117848113 -109676465 + L1 LINE L1 4745 4980 -1166 968 64 0 0 chr3 117848648 117848773 -109675805 - L1PA3 LINE L1 -3 6152 6028 2285 99 0 0 chr3 117848882 117849198 -109675380 + AluSx SINE Alu 3 318 0 2477 165 23 27 chr3 117851233 117851713 -109672865 + MER34 LTR ERV1 1 478 -64 21 0 0 0 chr3 117853698 117853719 -109670859 + AT_rich Low_complexity Low_complexity 1 21 0 1350 150 104 1 chr3 117854122 117854431 -109670147 + Tigger5 DNA MER2_type 1 2322 -1 463 290 118 43 chr3 117854622 117855321 -109669257 - L1MEc LINE L1 -4485 2340 1429 333 339 36 50 chr3 117855343 117855800 -109668778 - L1MEc LINE L1 -5142 1492 1086 6966 60 3 5 chr3 117856674 117857698 -109666880 + L1PA7 LINE L1 5120 6142 -12 29 0 0 0 chr3 117857714 117857743 -109666835 + AT_rich Low_complexity Low_complexity 1 29 0 215 176 0 59 chr3 117858255 117858323 -109666255 + T-rich Low_complexity Low_complexity 2 65 0 1802 256 24 20 chr3 117858437 117858938 -109665640 - L1MD2 LINE L1 -3 6356 5854 679 281 96 59 chr3 117859600 117859956 -109664622 + MLT1A2 LTR MaLR 1 369 -5 1560 227 81 35 chr3 117860393 117860874 -109663704 + MLT1D LTR MaLR 3 505 0 1919 173 78 8 chr3 117861162 117861560 -109663018 + MSTA LTR MaLR 1 426 -2 1377 188 0 0 chr3 117861562 117861818 -109662760 + MSTA-int LTR MaLR 1 256 -1395 7556 207 41 3 chr3 117861844 117863427 -109661151 + MLT1A2-int LTR MaLR 5 1647 -4 2233 146 68 11 chr3 117863431 117863836 -109660742 + MSTB LTR MaLR 1 364 0 202 114 29 0 chr3 117863960 117863995 -109660583 + GA-rich Low_complexity Low_complexity 1 36 0 4597 249 90 43 chr3 117864209 117865902 -109658676 + L1ME2 LINE L1 34 1806 -4734 1915 137 19 0 chr3 117866032 117866347 -109658231 - L1P LINE L1 -891 5255 4935 24 0 0 0 chr3 117866742 117866766 -109657812 + AT_rich Low_complexity Low_complexity 1 24 0 1675 284 51 42 chr3 117867353 117868440 -109656138 + L1ME2 LINE L1 4811 5912 -812 4289 225 9 46 chr3 117868572 117868833 -109655745 + L1 LINE L1 3004 3273 -2873 2236 78 41 0 chr3 117868833 117869128 -109655450 + AluY SINE Alu 1 307 -4 4289 225 9 46 chr3 117869128 117870358 -109654220 + L1 LINE L1 3273 4380 -1766 9430 88 9 17 chr3 117870467 117871847 -109652731 - HERVH LTR ERV1 -5471 2242 873 339 113 0 0 chr3 117872252 117872305 -109652273 + (TG)n Simple_repeat Simple_repeat 2 54 0 207 209 0 0 chr3 117872317 117872360 -109652218 + A-rich Low_complexity Low_complexity 1 43 0 232 334 92 46 chr3 117872691 117873407 -109651171 + L1MEd LINE L1 469 1217 -4902 1361 260 62 16 chr3 117875904 117876288 -109648290 + LTR40a LTR ERVL 116 517 -2 29 28 0 0 chr3 117876343 117876379 -109648199 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr3 117876907 117876929 -109647649 + AT_rich Low_complexity Low_complexity 1 22 0 1726 169 10 16 chr3 117877542 117877856 -109646722 + AluJb SINE Alu 1 312 0 772 251 67 41 chr3 117878320 117878635 -109645943 + L1ME2 LINE L1 6044 6366 -192 448 345 196 15 chr3 117878669 117879078 -109645500 - L2 LINE L2 -2 3311 2829 1354 170 18 131 chr3 117879094 117879476 -109645102 - MLT2B1 LTR ERVL 0 520 182 4545 124 12 5 chr3 117879642 117880313 -109644265 - HERVL LTR ERVL -114 5540 4865 2684 174 113 5 chr3 117880314 117880342 -109644236 + L1 LINE L1 4197 4221 -1925 261 0 0 0 chr3 117880342 117880371 -109644207 + (TA)n Simple_repeat Simple_repeat 1 29 0 2684 174 113 5 chr3 117880371 117881015 -109643563 + L1 LINE L1 4221 4942 -1204 486 128 23 0 chr3 117881123 117881209 -109643369 + L1MDa LINE L1 1870 1957 -4583 391 233 45 0 chr3 117881229 117881362 -109643216 + L1MDa LINE L1 2012 2150 -4390 5335 137 16 2 chr3 117881363 117882443 -109642135 + L1PA15 LINE L1 5082 6165 0 866 258 33 0 chr3 117882445 117882685 -109641893 + L1MD2 LINE L1 5773 6020 -339 67 49 0 0 chr3 117883094 117883196 -109641382 + AT_rich Low_complexity Low_complexity 1 102 0 1883 138 91 29 chr3 117883521 117883904 -109640674 - L1MA3 LINE L1 -6 6299 5893 1338 204 44 15 chr3 117883901 117884460 -109640118 - L1MA3 LINE L1 -743 5403 4887 * 2548 168 38 2 chr3 117884753 117885292 -109639286 - L1M2 LINE L1 -530 5761 5203 310 309 53 26 chr3 117885306 117885458 -109639120 - L1M4 LINE L1 -3401 2745 2590 240 255 20 29 chr3 117885594 117885696 -109638882 - L1M4 LINE L1 -3796 2350 2250 188 271 17 17 chr3 117985979 117986038 -109538540 - L2 LINE L2 -1392 1922 1864 659 203 123 0 chr3 117986104 117986242 -109538336 - MIR SINE MIR -101 161 7 2005 142 7 3 chr3 117986434 117986743 -109537835 + AluSg SINE Alu 1 310 0 4810 107 14 0 chr3 117987195 117987859 -109536719 + THE1B-int LTR MaLR 908 1580 0 2226 132 19 46 chr3 117987859 117988229 -109536349 + THE1B LTR MaLR 1 360 -4 609 302 79 40 chr3 117988233 117988757 -109535821 + THE1B-int LTR MaLR 1 606 -765 372 273 65 32 chr3 117989042 117989196 -109535382 + MLT1-int LTR MaLR 699 857 -514 611 221 22 7 chr3 117989565 117989701 -109534877 + Tigger7 DNA MER2_type 1 138 -595 7586 82 37 0 chr3 117989844 117990934 -109533644 + L1P LINE L1 3536 4665 -1481 10691 134 28 16 chr3 117991045 117992893 -109531685 + L1P3 LINE L1 16 1881 -4580 1040 181 11 6 chr3 117993327 117993509 -109531069 - AluJb SINE Alu -10 302 120 1556 152 134 4 chr3 117993515 117993791 -109530787 - AluSx SINE Alu 0 312 1 2147 122 3 0 chr3 117994572 117994868 -109529710 + AluSx SINE Alu 7 303 -9 6541 116 40 44 chr3 117995339 117996475 -109528103 - Tigger1 DNA MER2_type -54 2364 1234 443 200 25 0 chr3 117997665 117997745 -109526833 - AluJb SINE Alu -23 289 208 3446 178 31 52 chr3 117997848 117997897 -109526681 - L1M2 LINE L1 -5033 1816 1767 2194 113 3 0 chr3 117997897 117998188 -109526390 + AluSx SINE Alu 1 292 -20 3446 178 31 52 chr3 117998188 117998901 -109525677 - L1M2 LINE L1 -5082 1767 1070 1045 134 111 0 chr3 117999481 117999652 -109524926 - THE1B LTR MaLR 0 364 175 180 0 0 0 chr3 117999652 117999672 -109524906 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 7094 72 14 35 chr3 117999677 118000730 -109523848 - L1PA8 LINE L1 -3 6169 5121 2103 134 45 3 chr3 118000831 118001166 -109523412 - L1M3 LINE L1 -565 5769 5421 363 306 68 9 chr3 118001229 118001451 -109523127 - L1M4 LINE L1 -1166 4980 4746 340 204 197 20 chr3 118001454 118001606 -109522972 + MIR SINE MIR 81 259 -3 23 33 0 0 chr3 118001640 118001670 -109522908 + AT_rich Low_complexity Low_complexity 1 30 0 413 194 85 16 chr3 118001822 118001951 -109522627 - MLT1A1 LTR MaLR 0 365 228 662 206 0 15 chr3 118103205 118103336 -109421242 + MLT1C LTR MaLR 334 462 -5 184 240 20 0 chr3 118103686 118103736 -109420842 + MER5A DNA MER1_type 117 167 -22 430 243 93 7 chr3 118103937 118104077 -109420501 + MIR SINE MIR 97 248 -14 1617 108 29 12 chr3 118104128 118104369 -109420209 + AluSx SINE Alu 5 249 -63 2077 152 103 3 chr3 118104369 118104737 -109419841 - MER50 LTR ERV1 -329 405 1 632 124 26 26 chr3 118105008 118105121 -109419457 + AluJb SINE Alu 194 306 -6 670 184 129 45 chr3 118105445 118105646 -109418932 + Charlie4a DNA MER1_type 7 224 -284 2687 227 12 45 chr3 118105652 118106126 -109418452 + MER82 DNA MER2_type 10 457 -196 2203 107 0 7 chr3 118106126 118106425 -109418153 + AluSq SINE Alu 1 297 -16 2687 227 12 45 chr3 118106425 118106615 -109417963 + MER82 DNA MER2_type 457 652 -1 846 194 18 84 chr3 118106615 118106831 -109417747 + Charlie4a DNA MER1_type 232 426 -1535 1718 189 7 7 chr3 118106831 118107132 -109417446 + AluJo SINE Alu 1 301 -11 846 194 18 84 chr3 118107132 118107199 -109417379 + Charlie4a DNA MER1_type 426 496 -12 2037 106 38 0 chr3 118107331 118107624 -109416954 + AluSg SINE Alu 1 304 -6 305 263 70 9 chr3 118108727 118108841 -109415737 + MIR SINE MIR 87 207 -55 502 221 40 126 chr3 118108860 118108999 -109415579 - MIR SINE MIR -58 204 89 1336 154 88 48 chr3 118108999 118109271 -109415307 + AluJo SINE Alu 2 284 -28 502 221 40 126 chr3 118109271 118109353 -109415225 - MIR SINE MIR -173 89 2 262 118 78 0 chr3 118109654 118109705 -109414873 + MLT1H LTR MaLR 80 134 -415 636 241 43 73 chr3 118109802 118110034 -109414544 - LTR9 LTR ERV1 0 612 388 887 270 61 56 chr3 118110954 118111346 -109413232 + MLT1J LTR MaLR 69 462 -49 740 146 0 16 chr3 118112079 118112202 -109412376 + AluSg/x SINE Alu 189 309 -1 5716 102 14 3 chr3 118112204 118113105 -109411473 + L1MA3 LINE L1 5172 6081 -224 2111 145 3 0 chr3 118113106 118113410 -109411168 + AluSx SINE Alu 1 305 -7 187 133 0 0 chr3 118114686 118114716 -109409862 - L3b LINE CR1 -25 1558 1529 1421 157 14 64 chr3 118115017 118115297 -109409281 - AluJo SINE Alu 0 312 47 217 170 45 0 chr3 118115726 118115838 -109408740 + (TG)n Simple_repeat Simple_repeat 2 118 0 195 233 70 35 chr3 118115993 118116079 -109408499 - MIR3 SINE MIR -11 197 109 238 296 116 45 chr3 118116575 118116842 -109407736 + L2 LINE L2 2890 3175 -97 180 0 0 0 chr3 118117667 118117687 -109406891 + (T)n Simple_repeat Simple_repeat 1 20 0 369 209 0 0 chr3 118118273 118118340 -109406238 + MLT1A2 LTR MaLR 5 71 -303 2567 71 6 0 chr3 118118402 118118713 -109405865 + AluSq SINE Alu 1 313 0 918 117 0 36 chr3 118119460 118119597 -109404981 + FRAM SINE Alu 29 160 -16 1516 103 5 0 chr3 118120404 118120598 -109403980 + AluSc SINE Alu 1 195 -114 631 301 31 10 chr3 118120897 118121090 -109403488 - MER117 DNA MER1_type 0 197 1 216 260 125 39 chr3 118121250 118121354 -109403224 - MIR SINE MIR 0 262 150 269 303 17 25 chr3 118121507 118121626 -109402952 - MIR SINE MIR -111 151 34 2266 105 7 0 chr3 118122286 118122581 -109401997 - AluSx SINE Alu -15 297 1 226 240 104 10 chr3 118122922 118123018 -109401560 + MIR SINE MIR 48 152 -110 691 180 6 18 chr3 118123705 118123872 -109400706 - MER69 DNA AcHobo -47 2479 2315 895 198 5 24 chr3 118123893 118124100 -109400478 + L1MA4 LINE L1 6022 6224 -76 1914 106 13 27 chr3 118124552 118124985 -109399593 + HERV17 LTR ERV1 1247 1720 -5176 * 4374 86 7 2 chr3 118124980 118125559 -109399019 + HERV17 LTR ERV1 7757 8338 -61 388 254 16 0 chr3 118127140 118127266 -109397312 + MER69 DNA AcHobo 2382 2509 -17 210 37 0 0 chr3 118127929 118127956 -109396622 + (TGAA)n Simple_repeat Simple_repeat 4 30 0 1487 246 119 19 chr3 118129501 118130463 -109394115 - L1MB8 LINE L1 -301 5877 4800 21 57 0 0 chr3 118130597 118130632 -109393946 + GC_rich Low_complexity Low_complexity 1 35 0 679 238 78 42 chr3 118130796 118131141 -109393437 - LTR18B LTR ERVL 0 614 1 4971 140 3 4 chr3 118131144 118131879 -109392699 - HERVL18 LTR ERVL -2 6045 5312 39 0 0 0 chr3 118231919 118231958 -109292620 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr3 118232776 118232798 -109291780 + AT_rich Low_complexity Low_complexity 1 22 0 217 338 39 42 chr3 118233177 118233368 -109291210 - MIR SINE MIR -31 231 43 1989 125 7 0 chr3 118233531 118233811 -109290767 + AluSg SINE Alu 1 282 -28 244 0 0 0 chr3 118233811 118233838 -109290740 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2195 110 3 0 chr3 118234959 118235259 -109289319 + AluSc SINE Alu 1 301 -8 1646 157 74 84 chr3 118235374 118235768 -109288810 + MLT1B LTR MaLR 1 390 0 538 233 35 0 chr3 118236318 118236434 -109288144 + MER69 DNA AcHobo 1 120 -1106 11924 118 18 48 chr3 118236553 118239052 -109285526 - L1P3 LINE L1 -3935 2526 2 1734 161 34 0 chr3 118239053 118239345 -109285233 - Tigger1 DNA MER2_type -1988 430 129 406 162 3 26 chr3 118239339 118239427 -109285151 + MLT1D LTR MaLR 440 505 0 * 30 27 0 0 chr3 118239712 118239749 -109284829 + AT_rich Low_complexity Low_complexity 1 37 0 408 337 76 12 chr3 118239814 118239986 -109284592 + L3 LINE CR1 1382 1564 -13 23 33 0 0 chr3 118240169 118240199 -109284379 + AT_rich Low_complexity Low_complexity 1 30 0 278 260 20 10 chr3 118240469 118240569 -109284009 + MLT1A1 LTR MaLR 1 101 -264 21 36 0 0 chr3 118240965 118240993 -109283585 + AT_rich Low_complexity Low_complexity 1 28 0 210 419 23 0 chr3 118241264 118241350 -109283228 - L2 LINE L2 -22 3250 3163 736 307 13 9 chr3 118241426 118241657 -109282921 - MIR SINE MIR -2 260 29 218 0 45 45 chr3 118241662 118241706 -109282872 + (TTG)n Simple_repeat Simple_repeat 2 45 0 4507 99 22 4 chr3 118241706 118242390 -109282188 - L1PB1 LINE L1 -10 6141 5446 289 149 0 0 chr3 118242392 118242439 -109282139 - MLT2A2 LTR ERVL -8 512 466 231 175 0 0 chr3 118242460 118242517 -109282061 + (TA)n Simple_repeat Simple_repeat 2 58 0 2863 77 22 17 chr3 118242517 118242922 -109281656 - MLT2A2 LTR ERVL -40 413 7 3098 182 5 35 chr3 118242929 118243732 -109280846 - L1PB1 LINE L1 -701 5450 4670 1662 235 69 18 chr3 118244347 118244840 -109279738 + LTR40a LTR ERVL 2 519 0 249 108 0 0 chr3 118245959 118245996 -109278582 + (TTTA)n Simple_repeat Simple_repeat 4 40 0 2043 99 37 0 chr3 118245998 118246271 -109278307 - AluSg SINE Alu -27 283 1 32 57 0 0 chr3 118246939 118246992 -109277586 + AT_rich Low_complexity Low_complexity 1 53 0 2029 100 3 21 chr3 118247145 118247485 -109277093 - AluSx SINE Alu 0 335 1 22 0 0 0 chr3 118247614 118247636 -109276942 + AT_rich Low_complexity Low_complexity 1 22 0 225 32 32 0 chr3 118247677 118247708 -109276870 - U2 snRNA snRNA -153 35 4 335 70 0 0 chr3 118247896 118247939 -109276639 + MER61-int LTR ERV1 1320 1362 -3855 16825 115 45 18 chr3 118247955 118250812 -109273766 + MER61-int LTR ERV1 1655 4393 -824 663 223 13 6 chr3 118251097 118251254 -109273324 - FRAM SINE Alu -18 158 1 213 316 51 13 chr3 118251258 118251337 -109273241 - L3 LINE CR1 -177 1400 1319 * 246 320 10 41 chr3 118251321 118251418 -109273160 + L2 LINE L2 3220 3313 0 352 359 92 20 chr3 118251418 118251808 -109272770 - L3 LINE CR1 -253 1324 907 1035 241 9 5 chr3 118251808 118252020 -109272558 + MER58A DNA MER1_type 1 213 -11 1527 257 92 35 chr3 118252389 118252997 -109271581 - L1MD2 LINE L1 -16 6343 5701 2215 120 3 0 chr3 118254002 118254303 -109270275 + AluSx SINE Alu 1 302 -10 27 0 0 0 chr3 118255471 118255498 -109269080 + AT_rich Low_complexity Low_complexity 1 27 0 913 173 0 0 chr3 118255514 118255653 -109268925 - FRAM SINE Alu -38 138 1 519 268 181 26 chr3 118255729 118255994 -109268584 + MLT1G1 LTR MaLR 42 347 -248 421 247 82 0 chr3 118256924 118257021 -109267557 + MER58A DNA MER1_type 2 106 -1 303 243 54 0 chr3 118257182 118257256 -109267322 + L1MC4 LINE L1 6626 6703 -1339 183 167 42 42 chr3 118257927 118257975 -109266603 + L2 LINE L2 3255 3302 -11 282 191 67 56 chr3 118258225 118258314 -109266264 - MER5B DNA MER1_type -6 172 83 348 345 43 0 chr3 118259780 118259919 -109264659 - L2 LINE L2 0 3313 3169 367 325 69 58 chr3 118260069 118260343 -109264235 - L2 LINE L2 -366 2948 2672 1113 191 16 128 chr3 118260914 118261280 -109263298 + MLT1D LTR MaLR 113 437 -68 8169 161 17 4 chr3 118261280 118262693 -109261885 - Tigger1 DNA MER2_type -1 2417 987 32 0 0 0 chr3 118263255 118263287 -109261291 + AT_rich Low_complexity Low_complexity 1 32 0 286 325 50 0 chr3 118265141 118265261 -109259317 - MIR SINE MIR -74 188 63 910 214 154 19 chr3 118265698 118265964 -109258614 - AluJb SINE Alu 0 302 1 25 75 0 0 chr3 118266199 118266252 -109258326 + AT_rich Low_complexity Low_complexity 1 53 0 2456 80 0 0 chr3 118268076 118268375 -109256203 - AluSc SINE Alu -8 301 3 430 232 33 46 chr3 118270940 118271091 -109253487 + FRAM SINE Alu 25 173 -3 486 182 20 10 chr3 118272026 118272125 -109252453 - L1MC1 LINE L1 -5 6328 6229 456 325 92 55 chr3 118274275 118274623 -109249955 - L2 LINE L2 -8 3264 2904 22 0 0 0 chr3 118275261 118275283 -109249295 + AT_rich Low_complexity Low_complexity 1 22 0 2163 287 16 41 chr3 118276875 118277516 -109247062 + MLT-int LTR MaLR 844 1468 -267 399 89 0 0 chr3 118277604 118277660 -109246918 + (CA)n Simple_repeat Simple_repeat 1 56 0 2275 205 119 4 chr3 118277674 118278162 -109246416 + MER44D DNA MER2_type 6 604 -1 216 0 0 0 chr3 118279675 118279699 -109244879 + (CA)n Simple_repeat Simple_repeat 2 25 0 1312 143 45 25 chr3 118280039 118280284 -109244294 - MSTB1 LTR MaLR -4 428 179 2041 123 0 3 chr3 118281242 118281527 -109243051 + AluSg SINE Alu 1 284 -26 267 81 0 0 chr3 118281974 118282011 -109242567 + tRNA-Glu-GAG tRNA tRNA 1 37 -38 226 283 53 11 chr3 118282825 118282927 -109241651 - MIR SINE MIR -109 153 45 213 305 53 32 chr3 118283139 118283234 -109241344 + MER5A DNA MER1_type 74 170 -19 211 297 51 76 chr3 118284950 118285068 -109239510 - L2 LINE L2 -6 3266 3152 211 178 14 41 chr3 118285338 118285411 -109239167 + (TA)n Simple_repeat Simple_repeat 1 71 0 360 324 118 6 chr3 118287065 118287235 -109237343 - MIR SINE MIR -63 199 11 2056 122 26 3 chr3 118287356 118287659 -109236919 + AluSg SINE Alu 1 310 0 21 0 0 0 chr3 118289660 118289681 -109234897 + AT_rich Low_complexity Low_complexity 1 21 0 2357 177 7 27 chr3 118290074 118290521 -109234057 - MER49 LTR ERV1 -309 614 177 208 245 102 48 chr3 118290521 118290668 -109233910 + L2 LINE L2 2198 2352 -962 5161 209 25 10 chr3 118291371 118293029 -109231549 + L1M1 LINE L1 4128 5805 -498 347 219 42 21 chr3 118293041 118293137 -109231441 + AluS SINE Alu 5 102 -201 1918 186 16 19 chr3 118293242 118293671 -109230907 + L1 LINE L1 4943 5370 -776 1760 166 3 23 chr3 118293673 118293980 -109230598 + AluJb SINE Alu 5 305 -7 3101 214 26 3 chr3 118293983 118294666 -109229912 + L1P LINE L1 4643 5341 -805 180 333 0 0 chr3 118294963 118295008 -109229570 - L2 LINE L2 -305 2967 2923 443 179 36 0 chr3 118297198 118297282 -109227296 - MLT1A2 LTR MaLR -287 87 1 180 0 0 0 chr3 118297602 118297622 -109226956 + (GAAA)n Simple_repeat Simple_repeat 2 21 0 26 50 0 0 chr3 118297855 118297895 -109226683 + AT_rich Low_complexity Low_complexity 1 40 0 451 268 82 9 chr3 118298041 118298261 -109226317 + L1ME4a LINE L1 5704 5939 -182 700 253 53 41 chr3 118298293 118298538 -109226040 - L2 LINE L2 -4 3309 3062 8521 93 7 3 chr3 118301995 118303238 -109221340 - L1P LINE L1 -1987 4159 2912 464 235 157 69 chr3 118303416 118303633 -109220945 + MIR SINE MIR 21 256 -6 347 310 50 0 chr3 118303695 118303795 -109220783 + MER3 DNA MER1_type 1 105 -104 435 203 0 0 chr3 118304673 118304747 -109219831 - AluJ/FLAM SINE Alu -238 74 1 22 0 0 0 chr3 118306488 118306510 -109218068 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 118306813 118306841 -109217737 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 118307093 118307115 -109217463 + AT_rich Low_complexity Low_complexity 1 22 0 464 323 69 67 chr3 118308287 118308748 -109215830 - MLT1K LTR MaLR -2 586 125 21 0 0 0 chr3 118309422 118309443 -109215135 + AT_rich Low_complexity Low_complexity 1 21 0 721 74 0 0 chr3 118311626 118311721 -109212857 + AluY SINE Alu 213 307 -4 1454 118 26 123 chr3 118311800 118312298 -109212280 - LTR24B LTR ERV1 -8 568 119 22 0 0 0 chr3 118313199 118313221 -109211357 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr3 118313827 118313868 -109210710 + AT_rich Low_complexity Low_complexity 1 41 0 2592 156 74 36 chr3 118313979 118314505 -109210073 - MER34C LTR ERV1 -3 582 37 488 228 65 20 chr3 118315862 118316113 -109208465 + MLT1A1 LTR MaLR 1 351 -14 306 206 15 15 chr3 118316124 118316192 -109208386 + MLT1A1-int LTR MaLR 3 70 -1581 251 209 0 0 chr3 118317015 118317058 -109207520 + 5S rRNA rRNA 1 43 -78 223 371 150 20 chr3 118317068 118317321 -109207257 + L2 LINE L2 2592 2877 -437 379 341 64 19 chr3 118318164 118318478 -109206100 + L1M4 LINE L1 4509 4836 -1310 1010 303 50 35 chr3 118318502 118318898 -109205680 - L2 LINE L2 0 3313 2912 415 200 32 11 chr3 118320236 118320331 -109204247 + MER74A LTR ERVL 21 117 -441 1490 168 6 63 chr3 118320958 118321273 -109203305 - AluJo SINE Alu -5 307 11 396 294 151 32 chr3 118321393 118321611 -109202967 - MIR SINE MIR -17 245 2 252 0 0 0 chr3 118322625 118322653 -109201925 + (TG)n Simple_repeat Simple_repeat 2 29 0 201 187 13 40 chr3 118322689 118322764 -109201814 + T-rich Low_complexity Low_complexity 6 78 0 365 242 18 76 chr3 118322838 118323143 -109201435 + CT-rich Low_complexity Low_complexity 1 287 0 236 323 11 43 chr3 118323290 118323476 -109201102 + CT-rich Low_complexity Low_complexity 1 180 0 224 313 15 0 chr3 118323532 118323599 -109200979 + CT-rich Low_complexity Low_complexity 4 71 0 217 227 0 0 chr3 118325589 118325633 -109198945 + L2 LINE L2 3269 3312 -1 1456 224 19 32 chr3 118325897 118326276 -109198302 - MLT1A2 LTR MaLR 0 374 1 38 22 0 0 chr3 118326553 118326598 -109197980 + AT_rich Low_complexity Low_complexity 1 45 0 217 196 20 0 chr3 118327028 118327079 -109197499 + MIR SINE MIR 211 262 0 323 355 36 12 chr3 118327101 118327267 -109197311 + MER5B DNA MER1_type 7 176 -2 340 345 36 0 chr3 118327117 118327256 -109197322 - MER5A DNA MER1_type -22 167 24 313 250 11 65 chr3 118327453 118327545 -109197033 - MIR SINE MIR -102 106 20 189 0 0 0 chr3 118328432 118328453 -109196125 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 333 305 102 50 chr3 118329097 118329298 -109195280 - MIR SINE MIR -17 245 35 2087 130 0 7 chr3 118329999 118330291 -109194287 + AluSg SINE Alu 2 291 -19 352 282 136 14 chr3 118331841 118332054 -109192524 + L1ME3 LINE L1 5924 6162 0 203 222 74 28 chr3 118332283 118332358 -109192220 + MIR SINE MIR 20 98 -164 202 341 130 0 chr3 118333797 118333920 -109190658 - MIR SINE MIR -89 173 35 454 179 0 13 chr3 118334603 118334681 -109189897 + MER39 LTR ERV1 631 707 0 633 336 11 19 chr3 118334778 118335040 -109189538 - MIR SINE MIR 0 262 3 2003 112 52 3 chr3 118335966 118336271 -109188307 + MER61A-int LTR ERV1 4882 5201 -16 188 35 35 0 chr3 118336271 118336300 -109188278 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2025 96 22 0 chr3 118336306 118336576 -109188002 - AluSx SINE Alu -36 276 1 1385 149 127 23 chr3 118336601 118336909 -109187669 + MER61A LTR ERV1 1 340 -3 2616 10 0 3 chr3 118337237 118337526 -109187052 + AluYb8 SINE Alu 1 288 -30 217 256 49 73 chr3 118337561 118337643 -109186935 + MIR SINE MIR 35 114 -94 2192 130 31 0 chr3 118337767 118338120 -109186458 + THE1B LTR MaLR 1 364 0 266 346 50 0 chr3 118338919 118339020 -109185558 - MIR3 SINE MIR -43 165 60 2152 122 3 10 chr3 118339076 118339388 -109185190 + AluSp SINE Alu 1 310 -3 266 314 17 81 chr3 118339407 118339579 -109184999 + MIR SINE MIR 47 207 -55 188 415 0 0 chr3 118340113 118340154 -109184424 + T-rich Low_complexity Low_complexity 1 41 0 405 346 156 4 chr3 118340459 118340716 -109183862 - L2 LINE L2 -489 2825 2530 776 238 99 99 chr3 118340726 118341088 -109183490 - MER57B LTR ERV1 -6 428 67 198 0 0 0 chr3 118342660 118342682 -109181896 + (A)n Simple_repeat Simple_repeat 1 22 0 26 0 0 0 chr3 118342871 118342897 -109181681 + AT_rich Low_complexity Low_complexity 1 26 0 243 246 18 0 chr3 118342931 118342988 -109181590 + CT-rich Low_complexity Low_complexity 2 59 0 1086 217 68 16 chr3 118343548 118343797 -109180781 - MLT1A1 LTR MaLR -1 364 103 1798 124 31 28 chr3 118344025 118344316 -109180262 + AluSx SINE Alu 1 292 -20 347 231 84 113 chr3 118344374 118344577 -109180001 - L1ME1 LINE L1 -4 6162 5966 457 324 52 26 chr3 118345474 118345783 -109178795 + ERVL LTR ERVL 5010 5326 -438 210 37 0 0 chr3 118345800 118345827 -109178751 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 840 322 53 17 chr3 118345918 118346278 -109178300 - LTR16B LTR ERVL -91 373 1 198 333 39 46 chr3 118346489 118346635 -109177943 + L2 LINE L2 2614 2760 -554 1471 228 68 97 chr3 118346635 118347205 -109177373 + MLT2B3 LTR ERVL 1 554 0 484 289 159 25 chr3 118347723 118347924 -109176654 - MIR SINE MIR -3 259 32 231 188 0 0 chr3 118348064 118348112 -109176466 + (TA)n Simple_repeat Simple_repeat 2 49 0 250 266 13 0 chr3 118352324 118352403 -109172175 + (TTTA)n Simple_repeat Simple_repeat 2 81 0 315 337 41 47 chr3 118354030 118354202 -109170376 - MIR3 SINE MIR -34 174 4 1820 139 29 0 chr3 118355100 118355373 -109169205 - AluSx SINE Alu -25 287 7 216 322 0 0 chr3 118355513 118355572 -109169006 - MIR SINE MIR -10 252 194 25 0 0 0 chr3 118356619 118356644 -109167934 + AT_rich Low_complexity Low_complexity 1 25 0 419 263 90 26 chr3 118356882 118357038 -109167540 - MLT1E LTR MaLR -2 591 426 249 180 0 0 chr3 118357700 118357750 -109166828 + (TA)n Simple_repeat Simple_repeat 2 51 0 218 369 19 10 chr3 118357773 118357876 -109166702 + L2 LINE L2 3207 3310 -3 657 289 67 81 chr3 118358389 118358821 -109165757 - LTR16A1 LTR ERVL 0 457 32 246 350 93 68 chr3 118359179 118359545 -109165033 + L2 LINE L2 2873 3247 -25 2514 53 3 0 chr3 118359793 118360092 -109164486 + AluY SINE Alu 1 300 -11 665 65 0 0 chr3 118360172 118360264 -109164314 + L1PA5 LINE L1 6063 6154 0 447 259 22 37 chr3 118360569 118360704 -109163874 + MIR3 SINE MIR 8 140 -68 203 351 52 45 chr3 118361342 118361496 -109163082 - L2 LINE L2 -1 3312 3158 1579 135 97 152 chr3 118361956 118362409 -109162169 - MSTA LTR MaLR 0 428 1 4909 168 8 113 chr3 118362409 118363627 -109160951 - MSTA-int LTR MaLR 0 1580 491 1246 174 181 20 chr3 118363650 118363948 -109160630 - MSTA LTR MaLR -82 346 1 557 318 48 24 chr3 118364002 118364254 -109160324 + MIR SINE MIR 1 258 -4 21 0 0 0 chr3 118366181 118366202 -109158376 + AT_rich Low_complexity Low_complexity 1 21 0 4089 214 36 49 chr3 118366558 118366724 -109157854 + L1MA1 LINE L1 16 183 -7382 2268 115 0 10 chr3 118366724 118367037 -109157541 - AluSg SINE Alu 0 310 1 4089 214 36 49 chr3 118367037 118367868 -109156710 + L1MA1 LINE L1 183 1000 -6565 14551 170 23 10 chr3 118367871 118368502 -109156076 + L1MA1 LINE L1 1107 1729 -5992 348 24 0 0 chr3 118368502 118368543 -109156035 + (GA)n Simple_repeat Simple_repeat 2 42 0 14551 170 23 10 chr3 118368543 118373308 -109151270 + L1MA1 LINE L1 1729 6607 -1114 2282 122 0 3 chr3 118373308 118373619 -109150959 + AluSx SINE Alu 1 310 -2 14551 170 23 10 chr3 118373619 118374749 -109149829 + L1MA1 LINE L1 6607 7721 0 253 297 31 57 chr3 118374769 118374998 -109149580 + L1M4 LINE L1 4699 4921 -1225 272 282 0 0 chr3 118374998 118375069 -109149509 - MLT1L LTR MaLR -456 159 89 26 0 0 0 chr3 118375277 118375303 -109149275 + AT_rich Low_complexity Low_complexity 1 26 0 29 28 0 0 chr3 118375509 118375545 -109149033 + AT_rich Low_complexity Low_complexity 1 36 0 240 189 38 19 chr3 118375725 118375831 -109148747 + (TA)n Simple_repeat Simple_repeat 2 109 0 767 216 114 0 chr3 118376441 118376608 -109147970 - MER5A DNA MER1_type -1 188 3 24 53 0 0 chr3 118379083 118379121 -109145457 + AT_rich Low_complexity Low_complexity 1 38 0 7663 218 25 19 chr3 118379318 118380760 -109143818 - L1MEc LINE L1 -1057 6508 5077 1893 143 52 33 chr3 118380760 118381125 -109143453 + THE1C LTR MaLR 1 372 -3 7663 218 25 19 chr3 118381125 118381674 -109142904 - L1MEc LINE L1 -2488 5077 4500 187 54 54 0 chr3 118381674 118381711 -109142867 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 7663 218 25 19 chr3 118381711 118381763 -109142815 - L1MEc LINE L1 -3065 4500 4450 991 288 79 23 chr3 118381756 118382670 -109141908 - L1MEc LINE L1 -3754 3811 2841 * 2334 181 38 2 chr3 118382683 118383157 -109141421 - L1MA4A LINE L1 -4 6299 5809 201 147 0 0 chr3 118383159 118383193 -109141385 + (CA)n Simple_repeat Simple_repeat 1 34 0 320 221 48 19 chr3 118383820 118383924 -109140654 - L1MEc LINE L1 -4898 2848 2742 662 243 109 4 chr3 118383980 118384247 -109140331 - L1MEc LINE L1 -5054 2501 2207 22 80 0 0 chr3 118385088 118385138 -109139440 + AT_rich Low_complexity Low_complexity 1 50 0 37049 90 12 14 chr3 118385992 118392153 -109132425 - L1PA6 LINE L1 -3 6151 11 798 117 0 29 chr3 118392503 118392640 -109131938 + L1P3 LINE L1 1148 1280 -5181 1092 218 0 0 chr3 118392735 118392923 -109131655 - Tigger7 DNA MER2_type -2299 188 1 381 361 32 28 chr3 118392949 118393201 -109131377 - MIR SINE MIR -5 257 5 36 62 0 0 chr3 118393570 118393634 -109130944 + AT_rich Low_complexity Low_complexity 1 64 0 388 345 50 29 chr3 118394231 118394469 -109130109 - MER102a DNA MER1_type 0 330 88 331 251 37 107 chr3 118394778 118394965 -109129613 + MIR SINE MIR 57 230 -32 1176 245 21 55 chr3 118395397 118395724 -109128854 - LTR40a LTR ERVL -203 316 1 637 131 0 10 chr3 118395910 118396009 -109128569 + MER4A LTR ERV1 1 98 -566 1887 134 3 22 chr3 118396009 118396361 -109128217 + MER4A LTR ERV1 261 664 0 395 318 36 63 chr3 118397470 118397722 -109126856 - MIR SINE MIR 0 262 18 22 35 0 0 chr3 118398158 118398187 -109126391 + AT_rich Low_complexity Low_complexity 1 29 0 241 321 70 79 chr3 118398200 118398543 -109126035 - L2 LINE L2 -905 2409 2070 183 279 0 0 chr3 118399008 118399051 -109125527 - MIR SINE MIR -109 153 111 268 152 0 0 chr3 118399177 118399223 -109125355 + AluJ SINE Alu 87 132 -170 876 191 6 13 chr3 118399256 118399413 -109125165 + AluJ SINE Alu 130 285 -27 332 214 60 0 chr3 118399414 118399498 -109125080 - L1MC4 LINE L1 -1339 6703 6615 204 182 0 0 chr3 118401273 118401317 -109123261 + T-rich Low_complexity Low_complexity 1 44 0 294 288 158 7 chr3 118402420 118402559 -109122019 - MIR SINE MIR -1 261 102 1827 167 51 14 chr3 118405527 118405880 -109118698 + MER47A DNA MER2_type 1 366 0 22 0 0 0 chr3 118406099 118406121 -109118457 + AT_rich Low_complexity Low_complexity 1 22 0 227 252 17 70 chr3 118408547 118408662 -109115916 + L1ME4a LINE L1 5939 6047 -74 31 58 0 0 chr3 118408764 118408816 -109115762 + AT_rich Low_complexity Low_complexity 1 52 0 1708 206 8 0 chr3 118409579 118409939 -109114639 + L1MA9 LINE L1 5950 6312 0 1296 170 155 15 chr3 118410146 118410411 -109114167 + AluJo SINE Alu 1 302 0 1314 164 149 14 chr3 118411911 118412186 -109112392 + AluJo SINE Alu 1 312 0 23 0 0 0 chr3 118413343 118413366 -109111212 + AT_rich Low_complexity Low_complexity 1 23 0 1141 289 99 34 chr3 118413814 118414180 -109110398 + L2 LINE L2 2325 2733 -581 2041 125 0 7 chr3 118414180 118414476 -109110102 - AluSx SINE Alu -18 294 1 1141 289 99 34 chr3 118414476 118414604 -109109974 + L2 LINE L2 2733 2851 -463 657 325 111 53 chr3 118414623 118415214 -109109364 + L2 LINE L2 2650 3297 -16 22 35 0 0 chr3 118415758 118415787 -109108791 + AT_rich Low_complexity Low_complexity 1 29 0 353 22 22 0 chr3 118415935 118415981 -109108597 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 4910 178 35 12 chr3 118418576 118419653 -109104925 - L1MA7 LINE L1 -2 6289 5186 1681 187 11 0 chr3 118419765 118420071 -109104507 - AluSx SINE Alu 0 309 1 12671 211 29 10 chr3 118420072 118423766 -109100812 - L1M1 LINE L1 -493 6014 2255 1304 179 12 24 chr3 118423786 118424037 -109100541 - AluSx SINE Alu -19 293 46 2417 284 62 20 chr3 118424038 118425545 -109099033 - L1M1 LINE L1 -4106 2245 704 407 274 30 30 chr3 118425708 118425876 -109098702 - L1M1 LINE L1 -6113 168 1 38 0 0 0 chr3 118426795 118426833 -109097745 + AT_rich Low_complexity Low_complexity 1 38 0 604 252 0 0 chr3 118426892 118427011 -109097567 + FLAM_C SINE Alu 1 119 -14 204 125 62 0 chr3 118427274 118427322 -109097256 + A-rich Low_complexity Low_complexity 5 55 0 531 303 142 0 chr3 118427692 118427903 -109096675 + L1MEc LINE L1 100 340 -6056 1025 125 0 0 chr3 118427916 118428060 -109096518 + AluSg/x SINE Alu 138 281 -29 207 0 0 0 chr3 118428063 118428086 -109096492 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 749 179 18 80 chr3 118429485 118429709 -109094869 - L1MA8 LINE L1 0 6291 6082 1770 154 20 41 chr3 118429710 118430053 -109094525 + L1MA6 LINE L1 5698 6033 -267 1849 211 41 13 chr3 118430198 118430663 -109093915 + MLT2D LTR ERVL 1 464 0 243 0 0 0 chr3 118430841 118430868 -109093710 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 22 0 0 0 chr3 118431227 118431249 -109093329 + AT_rich Low_complexity Low_complexity 1 22 0 2254 136 3 22 chr3 118431254 118431623 -109092955 + THE1B LTR MaLR 1 362 -2 3524 120 3 69 chr3 118431625 118432249 -109092329 + THE1B-int LTR MaLR 1 583 -997 3364 105 14 28 chr3 118432273 118432770 -109091808 + THE1B-int LTR MaLR 1091 1580 0 2137 133 67 3 chr3 118432770 118433101 -109091477 + THE1B LTR MaLR 1 352 -12 564 262 15 59 chr3 118433343 118433545 -109091033 - MIR SINE MIR -59 203 11 1742 145 26 54 chr3 118436523 118436909 -109087669 - THE1C LTR MaLR 0 375 1 2280 94 3 7 chr3 118437207 118437514 -109087064 + AluSg SINE Alu 4 309 -1 384 272 40 24 chr3 118438192 118438317 -109086261 - L2 LINE L2 -8 3305 3179 1118 214 21 21 chr3 118439347 118439679 -109084899 - MER33 DNA MER1_type -4 320 1 186 328 90 0 chr3 118440848 118440915 -109083663 + L2 LINE L2 3239 3311 -2 21 112 0 0 chr3 118440915 118441013 -109083565 + AT_rich Low_complexity Low_complexity 1 98 0 6184 213 26 6 chr3 118441578 118442973 -109081605 - L1PA15 LINE L1 -749 5397 3975 4663 147 16 13 chr3 118442962 118443730 -109080848 + L1PA15 LINE L1 5391 6160 -5 * 29 0 0 0 chr3 118443774 118443803 -109080775 + AT_rich Low_complexity Low_complexity 1 29 0 1173 232 113 13 chr3 118443847 118444157 -109080421 + L1MA3 LINE L1 19 359 -7206 1047 149 123 5 chr3 118444157 118444352 -109080226 + LTR12 LTR ERV1 17 234 -480 282 185 74 25 chr3 118444394 118444475 -109080103 + LTR12 LTR ERV1 205 289 -425 229 261 0 0 chr3 118444475 118444540 -109080038 + LTR30 LTR ERV1 556 620 -102 633 202 26 9 chr3 118444546 118444660 -109079918 + pTR5 LTR ERV1 51 166 -2272 564 272 122 0 chr3 118444667 118444814 -109079764 + L1MA3 LINE L1 349 513 -7052 10207 177 41 6 chr3 118444818 118446439 -109078139 + L1MA3 LINE L1 4062 5624 -2100 1747 163 5 56 chr3 118446439 118446813 -109077765 - THE1A LTR MaLR 0 355 1 10207 177 41 6 chr3 118446813 118448640 -109075938 + L1MA3 LINE L1 5624 7724 0 245 197 16 0 chr3 118448694 118448755 -109075823 + (CATATA)n Simple_repeat Simple_repeat 3 64 0 347 322 114 30 chr3 118448771 118449103 -109075475 - L1MC4a LINE L1 -1937 5871 5512 496 330 128 16 chr3 118449166 118449533 -109075045 - L1MC/D LINE L1 -1989 5819 5412 1416 193 56 7 chr3 118449617 118449913 -109074665 - AluJo SINE Alu 0 309 1 23 0 0 0 chr3 118449972 118449995 -109074583 + AT_rich Low_complexity Low_complexity 1 23 0 280 259 84 8 chr3 118450069 118450200 -109074378 - L1ME LINE L1 -365 5780 5640 2131 106 0 0 chr3 118450243 118450563 -109074015 - AluY SINE Alu 0 320 1 263 261 46 23 chr3 118450594 118450724 -109073854 - L1ME LINE L1 -670 5477 5345 25 97 0 0 chr3 118450837 118450899 -109073679 + AT_rich Low_complexity Low_complexity 1 62 0 414 304 56 68 chr3 118451304 118451771 -109072807 - L1ME LINE L1 -1363 4766 4306 250 160 40 27 chr3 118451789 118451864 -109072714 + (TTAAA)n Simple_repeat Simple_repeat 1 76 0 562 311 35 15 chr3 118451864 118452266 -109072312 - L1ME LINE L1 -3345 2784 2375 481 270 59 80 chr3 118452620 118452909 -109071669 - L1ME2 LINE L1 -15 6149 5867 235 250 188 8 chr3 118452928 118453056 -109071522 - L1MC4a LINE L1 -684 5478 5328 719 273 39 0 chr3 118453074 118453305 -109071273 - L1MC4a LINE L1 -855 5291 5052 1396 152 16 19 chr3 118453326 118453680 -109070898 - LTR45B LTR ERV1 0 489 96 23 0 0 0 chr3 118454894 118454917 -109069661 + AT_rich Low_complexity Low_complexity 1 23 0 238 250 121 35 chr3 118455397 118455513 -109069065 - L1ME LINE L1 -4982 1137 1012 215 203 17 17 chr3 118455602 118455661 -109068917 + (TA)n Simple_repeat Simple_repeat 2 60 0 6256 124 12 5 chr3 118456003 118456992 -109067586 - L1MA3 LINE L1 -5 6300 5305 437 318 201 5 chr3 118457129 118457343 -109067235 - MIR SINE MIR -1 261 6 27 29 0 0 chr3 118457465 118457499 -109067079 + AT_rich Low_complexity Low_complexity 1 34 0 901 234 37 19 chr3 118458495 118458709 -109065869 - MER58A DNA MER1_type -6 218 1 223 311 66 0 chr3 118458756 118458817 -109065761 - MIR SINE MIR -114 148 84 1785 167 24 60 chr3 118459564 118460037 -109064541 - MLT2A2 LTR ERVL -85 459 1 241 417 0 17 chr3 118460037 118460152 -109064426 + MER5B DNA MER1_type 65 177 -1 572 234 69 78 chr3 118460546 118460816 -109063762 - MLT1F1 LTR MaLR -280 287 23 366 268 102 71 chr3 118460865 118461250 -109063328 - L1ME2 LINE L1 -450 5671 5282 2554 195 50 0 chr3 118461613 118462054 -109062524 + MER70A LTR ERVL 1 463 -9 1752 50 0 0 chr3 118462257 118462478 -109062100 + MLT2A1 LTR ERVL 3 223 -221 1114 157 5 51 chr3 118462591 118462754 -109061824 - LTR45B LTR ERV1 -280 209 57 1868 118 10 10 chr3 118462754 118463060 -109061518 + AluSx SINE Alu 2 307 -5 1114 157 5 51 chr3 118463060 118463113 -109061465 - LTR45B LTR ERV1 -432 57 3 409 224 154 30 chr3 118463125 118463186 -109061392 - L1ME2 LINE L1 -1280 4866 4814 2358 75 0 7 chr3 118463186 118463493 -109061085 - AluY SINE Alu -6 305 1 409 224 154 30 chr3 118463493 118463632 -109060946 - L1ME2 LINE L1 -1332 4814 4641 693 180 84 154 chr3 118465816 118466127 -109058451 - MLT1A1 LTR MaLR -8 357 78 298 306 211 30 chr3 118466159 118466495 -109058083 + L2 LINE L2 2375 2771 -543 2310 207 119 2 chr3 118467280 118467767 -109056811 - MER44D DNA MER2_type -1 604 6 300 154 0 0 chr3 118467781 118467833 -109056745 + (TG)n Simple_repeat Simple_repeat 1 52 0 2068 289 15 50 chr3 118467921 118468605 -109055973 - MLT1A1-int LTR MaLR -267 1468 809 1425 177 27 78 chr3 118468635 118468969 -109055609 - MLT1A1-int LTR MaLR -1418 317 1 489 240 58 23 chr3 118468977 118469231 -109055347 - MLT1A1 LTR MaLR -12 353 1 661 204 54 68 chr3 118471942 118472089 -109052489 + L1MD3 LINE L1 6213 7985 -2 1309 114 19 57 chr3 118472833 118473095 -109051483 - L1PA13 LINE L1 -1 6162 5911 934 108 27 0 chr3 118473095 118473243 -109051335 + L1P4 LINE L1 5662 5813 -348 1239 209 16 28 chr3 118473472 118473725 -109050853 - AluJo SINE Alu -23 289 40 192 77 0 0 chr3 118475395 118475421 -109049157 + (GA)n Simple_repeat Simple_repeat 1 26 0 21 57 0 0 chr3 118476423 118476458 -109048120 + AT_rich Low_complexity Low_complexity 1 35 0 247 276 78 42 chr3 118476545 118476737 -109047841 + L1MCc LINE L1 80 278 -6145 1190 277 51 48 chr3 118477131 118478289 -109046289 + L1MCc LINE L1 1129 2522 -4600 1574 210 39 21 chr3 118478337 118478718 -109045860 - MLT1D LTR MaLR -2 503 116 1142 249 33 58 chr3 118478733 118479098 -109045480 - MLT1A1 LTR MaLR -3 362 7 6655 226 81 25 chr3 118479119 118480729 -109043849 - MLT1A1-int LTR MaLR -31 1704 5 754 212 80 73 chr3 118480729 118480782 -109043796 - MLT1A1 LTR MaLR 0 365 314 582 88 0 0 chr3 118480782 118480862 -109043716 - MADE1 DNA Mariner 0 80 1 754 212 80 73 chr3 118480862 118481112 -109043466 - MLT1A1 LTR MaLR -51 314 3 343 253 0 33 chr3 118481126 118481217 -109043361 - MLT1E2 LTR MaLR -538 88 1 333 235 211 35 chr3 118481248 118481768 -109042810 + L1MCc LINE L1 2535 3146 -3976 22 35 0 0 chr3 118481890 118481919 -109042659 + AT_rich Low_complexity Low_complexity 1 29 0 1204 195 43 36 chr3 118481942 118482244 -109042334 - AluJo SINE Alu -8 304 1 817 228 10 21 chr3 118482540 118482733 -109041845 + AluJb SINE Alu 106 296 -16 38 22 0 0 chr3 118483656 118483701 -109040877 + AT_rich Low_complexity Low_complexity 1 45 0 1592 219 24 27 chr3 118483978 118484353 -109040225 + MLT1A2 LTR MaLR 1 374 0 255 221 191 0 chr3 118484599 118484667 -109039911 - L2 LINE L2 -1 3312 3232 307 277 0 11 chr3 118484697 118484791 -109039787 + MLT1I LTR MaLR 317 409 0 26 0 0 0 chr3 118485755 118485781 -109038797 + AT_rich Low_complexity Low_complexity 1 26 0 1430 188 87 64 chr3 118486583 118486940 -109037638 + MLT1A1 LTR MaLR 1 365 0 3210 215 57 9 chr3 118486940 118487628 -109036950 + MLT1A1-int LTR MaLR 1 721 -1014 1553 177 18 46 chr3 118487619 118487947 -109036631 + MLT1A1-int LTR MaLR 1417 1735 0 * 1770 187 61 0 chr3 118487947 118488289 -109036289 + MLT1A1 LTR MaLR 1 363 -2 185 406 8 8 chr3 118489811 118489934 -109034644 + MIR3 SINE MIR 78 200 -8 3062 281 79 25 chr3 118491445 118492685 -109031893 + L2 LINE L2 1835 3231 -82 270 0 0 0 chr3 118493291 118493321 -109031257 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 2004 119 7 3 chr3 118493321 118493601 -109030977 - AluSq SINE Alu -32 281 1 294 320 65 7 chr3 118493605 118493758 -109030820 - MIR SINE MIR -69 193 32 21 0 0 0 chr3 118494135 118494156 -109030422 + AT_rich Low_complexity Low_complexity 1 21 0 3192 125 16 30 chr3 118494600 118495095 -109029483 - LOR1a LTR ERV1 0 497 10 231 253 0 25 chr3 118496047 118496126 -109028452 + A-rich Low_complexity Low_complexity 2 78 0 276 251 166 38 chr3 118496234 118496757 -109027821 + L1MC/D LINE L1 3347 3936 -2210 1247 248 126 21 chr3 118496782 118497289 -109027289 + MLT1E3 LTR MaLR 57 624 0 559 268 157 64 chr3 118497305 118498198 -109026380 + L1MC/D LINE L1 3998 5006 -1140 2701 161 13 11 chr3 118498198 118498664 -109025914 + MLT1C LTR MaLR 1 467 0 559 268 157 64 chr3 118498664 118498828 -109025750 + L1MC/D LINE L1 5006 5153 -993 217 226 26 43 chr3 118499044 118499159 -109025419 + C-rich Low_complexity Low_complexity 1 113 0 596 92 64 18 chr3 118499306 118499415 -109025163 + MLT2A1 LTR ERVL 331 444 0 59 38 0 0 chr3 118499520 118499600 -109024978 + AT_rich Low_complexity Low_complexity 1 80 0 239 301 26 45 chr3 118500019 118500088 -109024490 + L1MC/D LINE L1 5758 5827 -1981 1507 204 3 23 chr3 118500088 118500392 -109024186 + AluJo SINE Alu 1 298 -14 239 301 26 45 chr3 118500392 118500478 -109024100 + L1MC/D LINE L1 5827 5910 -1898 24 0 0 0 chr3 118500705 118500729 -109023849 + AT_rich Low_complexity Low_complexity 1 24 0 305 290 14 21 chr3 118500913 118501058 -109023520 + (TA)n Simple_repeat Simple_repeat 2 145 0 269 275 9 18 chr3 118501415 118501524 -109023054 + L1MC/D LINE L1 5666 5773 -2035 1553 176 44 4 chr3 118501550 118501672 -109022906 + AluJb SINE Alu 1 117 -189 351 0 0 0 chr3 118501672 118501711 -109022867 + (CA)n Simple_repeat Simple_repeat 2 40 0 1553 176 44 4 chr3 118501711 118501883 -109022695 + AluJb SINE Alu 117 306 0 598 293 61 0 chr3 118501905 118502086 -109022492 + MER20 DNA MER1_type 1 192 -27 1029 217 84 40 chr3 118502086 118502409 -109022169 - MER2 DNA MER2_type -1 344 1 338 311 116 4 chr3 118502892 118503159 -109021419 + HAL1 LINE L1 1123 1419 -1088 2196 114 0 3 chr3 118503195 118503503 -109021075 - AluSg1 SINE Alu -2 307 1 258 32 0 0 chr3 118503527 118503558 -109021020 + (CA)n Simple_repeat Simple_repeat 2 32 0 502 326 107 16 chr3 118503634 118503953 -109020625 + MLT1J2 LTR MaLR 103 450 0 336 255 243 35 chr3 118503990 118504245 -109020333 + HAL1 LINE L1 1811 2118 -389 227 304 0 0 chr3 118504325 118504394 -109020184 + HAL1 LINE L1 2324 2392 -115 198 208 0 0 chr3 118504487 118504535 -109020043 + (TATG)n Simple_repeat Simple_repeat 3 50 0 30 45 0 0 chr3 118504536 118504580 -109019998 + AT_rich Low_complexity Low_complexity 1 44 0 248 250 0 0 chr3 118504809 118504861 -109019717 + LTR30 LTR ERV1 1 52 -670 251 163 0 20 chr3 118504861 118504910 -109019668 + LTR12 LTR ERV1 53 100 -614 2036 136 6 138 chr3 118504910 118505381 -109019197 + LTR12 LTR ERV1 76 484 -230 1541 164 4 50 chr3 118508604 118508884 -109015694 - AluJo SINE Alu -39 273 7 23 54 0 0 chr3 118509728 118509765 -109014813 + AT_rich Low_complexity Low_complexity 1 37 0 449 215 74 34 chr3 118510031 118510180 -109014398 - MLT1D LTR MaLR -349 156 2 243 250 0 0 chr3 118510426 118510494 -109014084 + (CATATA)n Simple_repeat Simple_repeat 3 70 0 774 259 172 30 chr3 118511001 118511442 -109013136 + MLT1D LTR MaLR 2 505 0 255 61 0 0 chr3 118511629 118511662 -109012916 + (TG)n Simple_repeat Simple_repeat 1 33 0 * 330 45 0 0 chr3 118511661 118511705 -109012873 + (GA)n Simple_repeat Simple_repeat 1 44 0 538 171 0 0 chr3 118512254 118512342 -109012236 - L1P4 LINE L1 -396 5772 5685 2246 85 55 0 chr3 118512344 118512674 -109011904 + L1PA13 LINE L1 5813 6160 -3 251 103 0 0 chr3 118513634 118513673 -109010905 + Harlequin LTR ERV1 6355 6393 -503 213 154 0 0 chr3 118514354 118514393 -109010185 + GA-rich Low_complexity Low_complexity 4 42 0 792 160 13 21 chr3 118514423 118514667 -109009911 + GA-rich Low_complexity Low_complexity 1 241 0 248 118 0 0 chr3 118516051 118516085 -109008493 - MADE1 DNA Mariner -44 36 3 1542 271 103 2 chr3 118516177 118516642 -109007936 - MLT1E2 LTR MaLR -4 622 111 262 233 0 0 chr3 118517533 118517593 -109006985 + (TA)n Simple_repeat Simple_repeat 2 61 0 35 41 0 0 chr3 118517831 118517880 -109006698 + AT_rich Low_complexity Low_complexity 1 49 0 2290 97 0 3 chr3 118518499 118518809 -109005769 - AluSc SINE Alu 0 309 1 23 33 0 0 chr3 118519261 118519291 -109005287 + AT_rich Low_complexity Low_complexity 1 30 0 570 239 89 33 chr3 118519484 118519697 -109004881 - MIR SINE MIR -34 228 4 181 326 59 37 chr3 118519924 118520059 -109004519 + L2 LINE L2 3152 3289 -24 24 77 0 0 chr3 118520832 118520884 -109003694 + AT_rich Low_complexity Low_complexity 1 52 0 2052 122 0 0 chr3 118521612 118521898 -109002680 - AluY SINE Alu -25 286 1 38 0 0 0 chr3 118525390 118525428 -108999150 + AT_rich Low_complexity Low_complexity 1 38 0 196 179 26 0 chr3 118525541 118525580 -108998998 - MIR SINE MIR -124 138 99 332 316 31 41 chr3 118526135 118526331 -108998247 - L2 LINE L2 -4 3309 3116 246 32 0 0 chr3 118528870 118528901 -108995677 + (CA)n Simple_repeat Simple_repeat 2 32 0 456 200 11 0 chr3 118529306 118529396 -108995182 - FLAM_A SINE Alu -18 124 34 2290 80 3 7 chr3 118530518 118530817 -108993761 - AluSg SINE Alu -12 298 1 489 229 8 17 chr3 118531752 118531870 -108992708 + MLT1I LTR MaLR 41 157 -252 209 271 0 0 chr3 118533267 118533315 -108991263 + CT-rich Low_complexity Low_complexity 4 51 0 235 380 25 6 chr3 118533934 118534092 -108990486 + MIR SINE MIR 66 226 -36 205 253 53 27 chr3 118534177 118534252 -108990326 - MIR SINE MIR -113 149 73 268 324 18 9 chr3 118534342 118534453 -108990125 + MIR SINE MIR 33 144 -64 1433 190 27 64 chr3 118535145 118535550 -108989028 - MLT1B LTR MaLR 0 390 1 806 148 23 8 chr3 118535595 118535723 -108988855 + AluJo SINE Alu 6 135 -177 1821 213 84 15 chr3 118536120 118536598 -108987980 + MER9 LTR ERVK 1 511 0 821 220 45 43 chr3 118536598 118537040 -108987538 + HERVK9 LTR ERVK 1 448 -5497 2042 134 3 22 chr3 118537502 118537816 -108986762 + AluSx SINE Alu 1 308 -4 2261 112 0 0 chr3 118537827 118538130 -108986448 + AluSg SINE Alu 1 303 -7 183 310 17 0 chr3 118538288 118538346 -108986232 + MIR SINE MIR 105 163 -99 * 392 330 44 25 chr3 118538333 118538536 -108986042 - MIR SINE MIR 0 262 56 2682 167 16 6 chr3 118538802 118539318 -108985260 - L1M3 LINE L1 -358 5810 5290 1639 75 0 5 chr3 118539503 118539704 -108984874 + AluSq SINE Alu 88 287 -26 216 226 0 0 chr3 118539732 118539794 -108984784 + (CA)n Simple_repeat Simple_repeat 1 62 0 1160 171 29 0 chr3 118539838 118540043 -108984535 - MLT1A1 LTR MaLR 0 365 155 505 122 11 11 chr3 118540846 118540936 -108983642 + L1PB2 LINE L1 6058 6147 -4 900 157 0 0 chr3 118541006 118541140 -108983438 + AluSq/x SINE Alu 1 134 -178 2660 168 31 40 chr3 118541189 118541765 -108982813 + MER4D LTR ERV1 333 903 0 368 228 7 27 chr3 118541800 118541949 -108982629 + GA-rich Low_complexity Low_complexity 4 149 0 637 181 30 30 chr3 118542624 118542757 -108981821 + AluJo SINE Alu 65 197 -115 820 126 104 0 chr3 118542809 118542944 -108981634 + FRAM SINE Alu 22 170 -6 2148 110 0 10 chr3 118543419 118543720 -108980858 + AluSx SINE Alu 1 298 -14 857 163 69 0 chr3 118543729 118543889 -108980689 + L1MA3 LINE L1 6134 6304 -1 2263 129 0 0 chr3 118543929 118544239 -108980339 + AluSx SINE Alu 1 310 -2 200 316 10 41 chr3 118544318 118544416 -108980162 - L3 LINE CR1 -1144 433 339 290 359 7 21 chr3 118545627 118545769 -108978809 + L2 LINE L2 3173 3312 -1 414 0 0 0 chr3 118547309 118547355 -108977223 + (TG)n Simple_repeat Simple_repeat 2 47 0 1686 214 185 13 chr3 118549941 118550529 -108974049 + LTR48 LTR ERV1 1 553 -91 32 0 0 0 chr3 118550629 118550661 -108973917 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 118551312 118551333 -108973245 + AT_rich Low_complexity Low_complexity 1 21 0 2610 224 25 16 chr3 118551336 118551609 -108972969 - L1MB3 LINE L1 -10 6173 5904 2408 87 3 0 chr3 118551609 118551907 -108972671 - AluSq SINE Alu -14 299 1 2610 224 25 16 chr3 118551907 118552308 -108972270 - L1MB3 LINE L1 -279 5904 5493 629 272 104 18 chr3 118552628 118552907 -108971671 + L1MD2 LINE L1 5818 6120 -239 561 243 20 7 chr3 118552938 118553090 -108971488 + L1MD2 LINE L1 6194 6347 -12 1506 99 0 50 chr3 118553092 118553313 -108971265 + AluSg SINE Alu 1 210 -100 22 0 0 0 chr3 118553358 118553380 -108971198 + AT_rich Low_complexity Low_complexity 1 22 0 1481 123 73 0 chr3 118553422 118553539 -108971039 + AluSx SINE Alu 1 108 -204 207 0 0 0 chr3 118553539 118553562 -108971016 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1481 123 73 0 chr3 118553562 118553663 -108970915 + AluSx SINE Alu 108 235 -77 719 126 118 0 chr3 118554026 118554145 -108970433 - FLAM_C SINE Alu 0 133 1 2069 121 35 3 chr3 118555995 118556284 -108968294 + AluJo SINE Alu 2 299 -13 3129 144 2 9 chr3 118556284 118556824 -108967754 + L1PA16 LINE L1 5322 5857 -309 223 297 0 27 chr3 118556848 118556922 -108967656 + MER5A DNA MER1_type 4 75 -114 1905 118 14 21 chr3 118556922 118557045 -108967533 + AluSx SINE Alu 1 123 -189 189 0 0 0 chr3 118557045 118557066 -108967512 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1905 118 14 21 chr3 118557066 118557231 -108967347 + AluSx SINE Alu 123 287 -25 375 282 211 24 chr3 118557495 118557704 -108966874 - MIR SINE MIR -12 250 3 462 302 41 23 chr3 118557739 118557911 -108966667 - L3 LINE CR1 -224 1353 1179 2183 118 0 3 chr3 118558379 118558683 -108965895 + AluSc SINE Alu 1 303 -6 402 235 141 14 chr3 118558684 118558921 -108965657 + L1ME2 LINE L1 5901 6324 -9 213 228 35 0 chr3 118558933 118558990 -108965588 + MIR SINE MIR 163 221 -41 217 336 60 8 chr3 118559621 118559755 -108964823 - MIR SINE MIR -121 141 1 1974 141 16 3 chr3 118559855 118560159 -108964419 + AluSx SINE Alu 1 308 -4 1141 184 21 0 chr3 118560680 118560914 -108963664 - L1MB3 LINE L1 -49 6134 5896 1005 207 47 28 chr3 118561046 118561259 -108963319 + MER20 DNA MER1_type 1 217 -2 192 139 47 47 chr3 118561272 118561315 -108963263 - MIR3 SINE MIR 0 208 166 239 77 0 26 chr3 118561578 118561617 -108962961 + (CAT)n Simple_repeat Simple_repeat 2 39 0 840 181 87 0 chr3 118562002 118562151 -108962427 + FRAM SINE Alu 1 161 -15 1602 222 93 50 chr3 118562152 118562670 -108961908 + MLT1F LTR MaLR 1 540 -2 242 235 0 29 chr3 118563752 118563820 -108960758 + (CATATA)n Simple_repeat Simple_repeat 3 68 0 2475 73 3 0 chr3 118563892 118564195 -108960383 - AluY SINE Alu -7 304 1 1145 134 21 0 chr3 118564831 118565025 -108959553 - L1P4 LINE L1 -490 5676 5479 333 0 0 0 chr3 118565025 118565062 -108959516 + (TG)n Simple_repeat Simple_repeat 2 38 0 2056 133 11 0 chr3 118565062 118565347 -108959231 - AluSx SINE Alu -8 304 17 1636 178 27 3 chr3 118565376 118565708 -108958870 + L1PA16 LINE L1 5659 5998 -168 2125 186 16 99 chr3 118567866 118568082 -108956496 - MLT2B1 LTR ERVL -40 480 248 5044 112 33 14 chr3 118568082 118568848 -108955730 - LTR17 LTR ERV1 0 780 1 2125 186 16 99 chr3 118568848 118569148 -108955430 - MLT2B1 LTR ERVL -272 248 7 290 228 0 0 chr3 118569357 118569414 -108955164 + HAL1 LINE L1 2 58 -2449 305 226 85 0 chr3 118569928 118570034 -108954544 + HAL1 LINE L1 797 911 -1596 309 272 74 0 chr3 118570047 118570128 -108954450 + HAL1 LINE L1 995 1081 -1426 656 228 7 7 chr3 118570130 118570266 -108954312 + FLAM_C SINE Alu 2 137 -6 312 200 80 27 chr3 118570712 118570787 -108953791 - L2 LINE L2 -8 3264 3186 35 41 0 0 chr3 118572830 118572879 -108951699 + AT_rich Low_complexity Low_complexity 1 49 0 1582 161 87 22 chr3 118573869 118574235 -108950343 - L1MA7 LINE L1 -28 6263 5874 655 45 36 100 chr3 118575077 118575187 -108949391 - AluY SINE Alu -207 104 2 548 271 35 30 chr3 118575198 118575397 -108949181 - MER87 LTR ERV1 -168 373 174 421 281 75 56 chr3 118575633 118575659 -108948919 - L1MC4 LINE L1 -107 7935 7911 2179 130 3 0 chr3 118575659 118575952 -108948626 - AluSx SINE Alu -18 294 1 421 281 75 56 chr3 118575952 118576245 -108948333 - L1MC4 LINE L1 -131 7911 7610 235 360 0 9 chr3 118576285 118576399 -108948179 - L1MC5 LINE L1 -535 7426 7314 264 268 65 39 chr3 118577450 118577603 -108946975 + MER67A LTR ERV1 387 543 0 348 299 43 34 chr3 118578221 118578338 -108946240 - MIR SINE MIR -106 156 39 452 309 142 43 chr3 118578703 118579147 -108945431 + L1MDa LINE L1 210 697 -5843 348 232 51 22 chr3 118579357 118579495 -108945083 + L1MDa LINE L1 1004 1145 -5398 229 160 120 0 chr3 118579620 118579670 -108944908 + MER49 LTR ERV1 43 98 -825 281 89 22 0 chr3 118579677 118579722 -108944856 + (TTCC)n Simple_repeat Simple_repeat 2 47 0 1581 120 108 4 chr3 118579722 118579963 -108944615 - AluSx SINE Alu -44 268 3 1844 159 7 17 chr3 118580188 118580478 -108944100 + AluJo SINE Alu 1 287 -25 391 239 141 5 chr3 118580744 118580928 -108943650 + L1M4 LINE L1 5113 5321 -825 1969 143 0 52 chr3 118580931 118581260 -108943318 + AluSx SINE Alu 1 312 0 455 218 0 0 chr3 118581271 118581372 -108943206 + L1MC5 LINE L1 7817 7917 -44 442 159 0 14 chr3 118582321 118582390 -108942188 + AluS SINE Alu 2 69 -243 199 299 43 0 chr3 118583003 118583120 -108941458 + L2 LINE L2 2461 2582 -732 416 241 0 60 chr3 118583407 118583523 -108941055 + L2 LINE L2 3205 3313 0 506 231 91 0 chr3 118583917 118584060 -108940518 + L1MA5 LINE L1 5844 5999 -301 512 96 75 43 chr3 118584306 118584400 -108940178 + FRAM SINE Alu 64 160 -16 2402 96 3 3 chr3 118584401 118584713 -108939865 + AluSp SINE Alu 1 312 -1 619 183 134 0 chr3 118585143 118585285 -108939293 - MER5A DNA MER1_type 0 189 29 2152 135 0 16 chr3 118587077 118587389 -108937189 - AluSx SINE Alu -5 307 1 2265 118 14 14 chr3 118588326 118588681 -108935897 - THE1A LTR MaLR 0 355 1 1821 131 0 70 chr3 118590422 118590761 -108933817 - AluSx SINE Alu 0 312 1 291 167 19 19 chr3 118591308 118591362 -108933216 - Charlie1 DNA MER1_type -2705 56 3 852 198 10 61 chr3 118591589 118591882 -108932696 - Charlie1 DNA MER1_type -6 2755 2478 357 338 20 20 chr3 118592061 118592419 -108932159 + GA-rich Low_complexity Low_complexity 1 358 0 212 288 0 50 chr3 118592382 118592462 -108932116 + A-rich Low_complexity Low_complexity 1 76 0 * 260 208 0 0 chr3 118592464 118592517 -108932061 + AluJ/monomer SINE Alu 256 308 0 447 199 22 22 chr3 118593496 118593632 -108930946 + L1PA15 LINE L1 6028 6163 -2 24 0 0 0 chr3 118593802 118593826 -108930752 + AT_rich Low_complexity Low_complexity 1 24 0 433 195 0 11 chr3 118593826 118593913 -108930665 - AluJb SINE Alu -64 248 163 380 149 0 0 chr3 118593917 118593980 -108930598 - Alu SINE Alu -255 53 1 1621 168 104 90 chr3 118594069 118594569 -108930009 - LTR54 LTR ERV1 0 510 4 279 211 127 0 chr3 118594999 118595070 -108929508 + MIR3 SINE MIR 125 204 -4 951 175 24 44 chr3 118595320 118595526 -108929052 - AluJo SINE Alu -9 303 102 811 229 30 33 chr3 118595526 118595797 -108928781 + AluSq SINE Alu 21 290 -23 349 322 107 25 chr3 118597683 118597925 -108926653 + MIR SINE MIR 1 262 0 302 250 0 0 chr3 118598058 118598130 -108926448 + CT-rich Low_complexity Low_complexity 2 73 0 645 215 15 146 chr3 118598486 118598636 -108925942 - MER45A DNA AcHobo -1403 178 60 1266 55 49 16 chr3 118598636 118598819 -108925759 - L1PA3 LINE L1 -4 6151 5963 645 215 15 146 chr3 118598819 118598873 -108925705 - MER45A DNA AcHobo -1521 60 1 199 290 99 25 chr3 118599811 118599939 -108924639 - MIR SINE MIR -58 204 65 215 263 42 95 chr3 118600412 118600507 -108924071 - MER5B DNA MER1_type -6 172 83 210 186 17 17 chr3 118600520 118600579 -108923999 + (TG)n Simple_repeat Simple_repeat 1 59 0 200 222 32 16 chr3 118600749 118600812 -108923766 + A-rich Low_complexity Low_complexity 1 64 0 1400 264 137 45 chr3 118600827 118601469 -108923109 + L1MC4a LINE L1 6315 7087 -721 2350 64 10 0 chr3 118601469 118601766 -108922812 - AluY SINE Alu -11 300 1 1400 264 137 45 chr3 118601766 118602147 -108922431 + L1MC4a LINE L1 7087 7432 -376 22 80 0 0 chr3 118602394 118602444 -108922134 + AT_rich Low_complexity Low_complexity 1 50 0 602 139 5 206 chr3 118602586 118602795 -108921783 - 7SK RNA RNA -4 189 23 517 122 0 12 chr3 118602795 118602877 -108921701 + L1MA4 LINE L1 5866 5946 -354 * 1520 151 13 27 chr3 118602875 118603173 -108921405 + L1M2 LINE L1 4082 4375 -1771 1049 155 29 11 chr3 118603174 118603514 -108921064 + L1M2 LINE L1 5178 5521 -743 2456 56 0 0 chr3 118604012 118604300 -108920278 - AluY SINE Alu -21 290 3 652 274 74 70 chr3 118604311 118605028 -108919550 + L1MC4 LINE L1 7112 7824 -218 602 139 5 206 chr3 118605124 118605333 -108919245 - 7SK RNA RNA -4 189 23 517 122 0 12 chr3 118605333 118605415 -108919163 + L1MA4 LINE L1 5866 5946 -354 * 1520 151 13 27 chr3 118605413 118605711 -108918867 + L1MA7 LINE L1 4082 4375 -1771 3046 169 13 8 chr3 118605712 118606389 -108918189 + L1MA7 LINE L1 5178 5857 -443 1463 154 65 19 chr3 118606390 118606715 -108917863 + L1MA7 LINE L1 5950 6289 -2 21 89 0 0 chr3 118606717 118606773 -108917805 + AT_rich Low_complexity Low_complexity 1 56 0 5126 180 23 22 chr3 118606960 118608190 -108916388 + L1PA16 LINE L1 4125 5359 -807 781 176 0 0 chr3 118608190 118608321 -108916257 + FLAM_C SINE Alu 3 133 0 5126 180 23 22 chr3 118608321 118609121 -108915457 + L1PA16 LINE L1 5359 6157 -9 582 243 7 0 chr3 118609165 118609305 -108915273 + L1ME LINE L1 5678 5818 -303 225 0 0 0 chr3 118609754 118609779 -108914799 + (T)n Simple_repeat Simple_repeat 1 25 0 200 141 62 31 chr3 118610381 118610445 -108914133 + (TTAA)n Simple_repeat Simple_repeat 4 69 0 273 338 8 30 chr3 118610473 118610606 -108913972 - MIR SINE MIR -10 252 123 451 222 59 7 chr3 118613433 118613568 -108911010 - MIR SINE MIR 0 262 121 1030 181 29 55 chr3 118614062 118614371 -108910207 + MER33 DNA MER1_type 1 301 -23 1691 183 23 34 chr3 118614518 118614868 -108909710 + MER7A DNA MER2_type 3 346 0 183 315 90 0 chr3 118615166 118615255 -108909323 + MIR SINE MIR 11 107 -155 836 126 11 104 chr3 118615806 118615989 -108908589 + THE1B LTR MaLR 194 359 -5 10776 121 6 11 chr3 118616001 118617509 -108907069 + THE1B-int LTR MaLR 1 1502 -78 2189 121 0 0 chr3 118617509 118617807 -108906771 + AluSp SINE Alu 1 298 -15 10776 121 6 11 chr3 118617807 118617886 -108906692 + THE1B-int LTR MaLR 1502 1580 0 1903 141 19 51 chr3 118617887 118618262 -108906316 + THE1B LTR MaLR 2 364 0 1848 194 67 32 chr3 118618307 118618782 -108905796 + LTR22B LTR ERVK 1 492 0 244 292 50 67 chr3 118618783 118618800 -108905778 + MIR SINE MIR 137 153 -109 2035 122 17 7 chr3 118618800 118619095 -108905483 - AluSc SINE Alu -11 298 1 244 292 50 67 chr3 118619095 118619197 -108905381 + MIR SINE MIR 153 254 -8 1591 192 7 42 chr3 118619198 118619505 -108905073 - AluJb SINE Alu -13 299 4 257 356 52 0 chr3 118619554 118619689 -108904889 - MLT1I LTR MaLR -34 375 234 22 0 0 0 chr3 118622464 118622486 -108902092 + AT_rich Low_complexity Low_complexity 1 22 0 235 323 31 31 chr3 118623979 118624075 -108900503 + L2 LINE L2 3200 3295 -18 24 32 0 0 chr3 118624689 118624720 -108899858 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr3 118625278 118625309 -108899269 + AT_rich Low_complexity Low_complexity 1 31 0 1665 186 10 10 chr3 118625310 118625611 -108898967 - AluJo SINE Alu -11 301 1 562 162 10 0 chr3 118626765 118626864 -108897714 - L1PA16 LINE L1 -9 6157 6058 951 125 0 0 chr3 118626869 118627013 -108897565 + L1P4 LINE L1 5380 5523 -642 1659 166 11 4 chr3 118627013 118627291 -108897287 - MER47A DNA MER2_type -85 281 2 734 268 56 63 chr3 118627564 118628067 -108896511 - MER77 LTR ERV1 -6 599 95 244 322 27 54 chr3 118628036 118628185 -108896393 - MER77 LTR ERV1 -407 198 54 * 387 342 133 4 chr3 118628467 118628692 -108895886 + L2 LINE L2 2227 2480 -834 692 125 39 0 chr3 118629656 118629760 -108894818 + AluSg/x SINE Alu 192 299 -10 370 263 32 0 chr3 118629760 118629837 -108894741 - MER31B LTR ERV1 -70 396 317 1496 199 54 57 chr3 118629837 118630335 -108894243 - MER39 LTR ERV1 0 707 1 962 183 24 12 chr3 118630335 118630612 -108893966 - MER31B LTR ERV1 -144 322 1 22 0 0 0 chr3 118631478 118631500 -108893078 + AT_rich Low_complexity Low_complexity 1 22 0 1950 92 0 0 chr3 118632599 118632880 -108891698 + L1PA13 LINE L1 5878 6158 -5 299 281 11 0 chr3 118634023 118634112 -108890466 + (CATATA)n Simple_repeat Simple_repeat 1 90 0 605 301 55 58 chr3 118634476 118634617 -108889961 + L1ME4a LINE L1 5636 5776 -345 1439 199 40 4 chr3 118634617 118634893 -108889685 - AluJo SINE Alu -26 286 1 605 301 55 58 chr3 118634893 118635220 -108889358 + L1ME4a LINE L1 5776 6103 -18 1603 247 17 39 chr3 118636324 118636646 -108887932 - MER31B LTR ERV1 -9 457 147 3228 173 74 8 chr3 118636646 118637307 -108887271 - MER39 LTR ERV1 -2 705 1 1603 247 17 39 chr3 118637307 118637449 -108887129 - MER31B LTR ERV1 -319 147 3 182 261 22 0 chr3 118637459 118637505 -108887073 - MIR SINE MIR -107 155 109 1579 180 25 44 chr3 118637614 118637931 -108886647 - AluJb SINE Alu -1 311 1 1537 216 59 30 chr3 118638018 118638522 -108886056 - MER39 LTR ERV1 0 707 4 285 75 0 0 chr3 118638588 118638628 -108885950 + (CA)n Simple_repeat Simple_repeat 1 40 0 24 85 0 0 chr3 118640866 118640925 -108883653 + AT_rich Low_complexity Low_complexity 1 59 0 1916 162 19 35 chr3 118641659 118642029 -108882549 + THE1B LTR MaLR 1 364 0 11152 101 18 1 chr3 118642029 118643583 -108880995 + THE1B-int LTR MaLR 1 1580 0 2097 134 22 27 chr3 118643583 118643949 -108880629 + THE1B LTR MaLR 1 364 0 220 120 20 40 chr3 118644205 118644255 -108880323 + (TAAA)n Simple_repeat Simple_repeat 3 51 0 48 67 0 0 chr3 118644255 118644345 -108880233 + AT_rich Low_complexity Low_complexity 1 90 0 28 71 0 0 chr3 118644383 118644439 -108880139 + AT_rich Low_complexity Low_complexity 1 56 0 34 42 0 0 chr3 118645079 118645127 -108879451 + AT_rich Low_complexity Low_complexity 1 48 0 1309 267 32 44 chr3 118645155 118645590 -108878988 + MLT2B1 LTR ERVL 41 470 -50 261 0 0 0 chr3 118645591 118645620 -108878958 + (TG)n Simple_repeat Simple_repeat 2 30 0 22 0 0 0 chr3 118645730 118645752 -108878826 + AT_rich Low_complexity Low_complexity 1 22 0 1933 168 66 6 chr3 118646069 118646560 -108878018 + L1MA7 LINE L1 5664 6290 -1 1092 191 29 0 chr3 118646732 118646936 -108877642 - MER2 DNA MER2_type -135 210 1 480 287 73 0 chr3 118646950 118647100 -108877478 - MIR SINE MIR -48 214 54 2284 100 0 0 chr3 118647221 118647531 -108877047 + AluY SINE Alu 1 310 -1 232 241 89 54 chr3 118647985 118648097 -108876481 + MLT1J2 LTR MaLR 279 394 -56 27 0 0 0 chr3 118648348 118648375 -108876203 + AT_rich Low_complexity Low_complexity 1 27 0 1412 177 49 0 chr3 118648523 118648811 -108875767 + MER33 DNA MER1_type 1 302 -22 951 254 64 3 chr3 118649012 118649339 -108875239 - LTR37A LTR ERV1 -2 424 78 22 56 0 0 chr3 118649428 118649464 -108875114 + AT_rich Low_complexity Low_complexity 1 36 0 1010 226 66 113 chr3 118649663 118650115 -108874463 + MLT1E2 LTR MaLR 3 433 -193 33 25 0 0 chr3 118650303 118650343 -108874235 + AT_rich Low_complexity Low_complexity 1 40 0 206 346 0 0 chr3 118652644 118652745 -108871833 + A-rich Low_complexity Low_complexity 4 104 0 3335 158 13 0 chr3 118653547 118654097 -108870481 - Tigger4(Zombi) DNA MER2_type 0 2731 2175 1469 180 14 25 chr3 118654097 118654413 -108870165 + AluJb SINE Alu 1 313 0 1048 207 0 0 chr3 118654432 118654606 -108869972 - Tigger4(Zombi) DNA MER2_type -2557 174 1 331 172 16 16 chr3 118654558 118654622 -108869956 + MER46A DNA MER2_type 97 160 -76 * 297 261 52 39 chr3 118657014 118657167 -108867411 + HAL1b LINE L1 755 909 -439 565 296 39 17 chr3 118657553 118657786 -108866792 + L1MCc LINE L1 29 266 -6157 637 298 39 52 chr3 118657873 118658030 -108866548 + L1MCc LINE L1 1398 1556 -5385 2301 94 7 0 chr3 118658030 118658339 -108866239 + AluY SINE Alu 1 311 0 637 298 39 52 chr3 118658339 118658791 -108865787 + L1MCc LINE L1 1556 1999 -4942 * 1083 271 65 48 chr3 118658787 118659476 -108865102 + L1M4 LINE L1 3223 3923 -2223 25 31 0 0 chr3 118660748 118660780 -108863798 + AT_rich Low_complexity Low_complexity 1 32 0 672 220 0 0 chr3 118661017 118661135 -108863443 - FLAM_C SINE Alu -25 118 1 328 260 116 19 chr3 118662031 118662211 -108862367 - MLT1G1 LTR MaLR 0 595 348 25 0 0 0 chr3 118663294 118663319 -108861259 + AT_rich Low_complexity Low_complexity 1 25 0 321 340 19 13 chr3 118664721 118664880 -108859698 + MLT1J1 LTR MaLR 287 446 0 839 240 119 92 chr3 118665381 118665836 -108858742 + MLT1D LTR MaLR 1 505 0 746 288 139 48 chr3 118665836 118666301 -108858277 - MLT1F LTR MaLR -34 508 1 327 229 70 45 chr3 118666609 118666766 -108857812 + L1ME1 LINE L1 6004 6164 -2 291 281 5 29 chr3 118666855 118667060 -108857518 + L1M4 LINE L1 3624 3989 -2157 381 315 60 21 chr3 118667524 118667731 -108856847 + MLT1J LTR MaLR 245 561 -54 587 275 129 68 chr3 118667936 118668448 -108856130 - MLT1H LTR MaLR 0 555 13 208 262 0 49 chr3 118669282 118669343 -108855235 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 1017 202 53 66 chr3 118671399 118671835 -108852743 - MER76 LTR ERV -195 493 1 2071 240 76 82 chr3 118671839 118672064 -108852514 - L1MCb LINE L1 -5088 957 732 2424 151 50 17 chr3 118672064 118672482 -108852096 + MSTB1 LTR MaLR 1 432 0 2071 240 76 82 chr3 118672482 118673182 -108851396 - L1MCb LINE L1 -5313 732 38 480 303 87 46 chr3 118673214 118673432 -108851146 + MLT1J LTR MaLR 230 456 -55 2468 60 7 0 chr3 118673879 118674180 -108850398 + AluY SINE Alu 1 303 -8 246 62 0 0 chr3 118676604 118676636 -108847942 + (A)n Simple_repeat Simple_repeat 1 32 0 465 304 141 5 chr3 118677077 118677297 -108847281 - MIR SINE MIR 0 262 13 2476 163 21 61 chr3 118678513 118679021 -108845557 - L1MA7 LINE L1 0 6300 5869 264 30 0 0 chr3 118679021 118679054 -108845524 + (TG)n Simple_repeat Simple_repeat 2 34 0 2476 163 21 61 chr3 118679054 118679300 -108845278 - L1MA7 LINE L1 -431 5869 5615 745 240 179 5 chr3 118679319 118679711 -108844867 - MER69 DNA AcHobo -55 2471 2012 * 1467 286 86 11 chr3 118679703 118680241 -108844337 - MER69 DNA AcHobo -1948 578 1 652 255 69 21 chr3 118680278 118680466 -108844112 - MER63A DNA MER1_type -12 198 2 1962 141 7 122 chr3 118681297 118681738 -108842840 + MLT1B LTR MaLR 1 390 0 194 383 67 35 chr3 118682970 118683286 -108841292 + L2 LINE L2 1344 1669 -1645 1947 212 93 23 chr3 118683298 118683770 -108840808 - MLT1D LTR MaLR 0 505 1 502 305 46 58 chr3 118683789 118684048 -108840530 + MIR SINE MIR 6 261 -1 214 216 59 0 chr3 118684975 118685026 -108839552 + (TATATG)n Simple_repeat Simple_repeat 2 55 0 589 342 108 32 chr3 118685109 118685557 -108839021 - L2 LINE L2 -283 3030 2558 1229 257 136 56 chr3 118685664 118686252 -108838326 - L2 LINE L2 -1125 2189 1555 287 297 40 0 chr3 118686249 118686350 -108838228 - MIR SINE MIR -23 239 135 * 1968 113 35 0 chr3 118687307 118687591 -108836987 + AluSg SINE Alu 1 294 -16 319 193 52 111 chr3 118687816 118687951 -108836627 - L2 LINE L2 -1 3312 3186 330 123 0 0 chr3 118688410 118688467 -108836111 + (TCTA)n Simple_repeat Simple_repeat 3 59 0 930 164 55 55 chr3 118688479 118688698 -108835880 + MER20 DNA MER1_type 1 219 0 934 279 41 27 chr3 118689240 118689605 -108834973 - L1MCc LINE L1 -5984 439 70 192 179 0 0 chr3 118690119 118690158 -108834420 + (TATATG)n Simple_repeat Simple_repeat 3 41 0 366 311 111 20 chr3 118690341 118690668 -108833910 - L1MC4a LINE L1 -340 5781 5555 194 91 30 0 chr3 118690826 118690859 -108833719 + GA-rich Low_complexity Low_complexity 1 34 0 2122 97 0 0 chr3 118690926 118691204 -108833374 - AluY SINE Alu -7 304 27 1348 124 15 0 chr3 118691204 118691405 -108833173 - LTR12 LTR ERV1 -134 580 377 393 245 10 0 chr3 118691405 118691507 -108833071 - LTR30 LTR ERV1 -79 643 541 528 113 15 0 chr3 118691507 118691613 -108832965 - LTR12 LTR ERV1 -440 274 53 253 231 0 0 chr3 118691613 118691665 -108832913 - LTR30 LTR ERV1 -670 52 1 207 280 130 30 chr3 118692883 118692983 -108831595 + MIR3 SINE MIR 93 202 -6 384 121 15 0 chr3 118693467 118693533 -108831045 + L1MC3 LINE L1 6864 6930 -855 2426 63 0 3 chr3 118693682 118693981 -108830597 + AluY SINE Alu 1 298 -13 21 0 0 0 chr3 118694043 118694064 -108830514 + AT_rich Low_complexity Low_complexity 1 21 0 183 129 0 0 chr3 118694183 118694214 -108830364 + (TTTTC)n Simple_repeat Simple_repeat 3 33 0 975 244 5 9 chr3 118694234 118694455 -108830123 - AluJo SINE Alu -92 220 1 4037 148 43 7 chr3 118695429 118696090 -108828488 - L1PA16 LINE L1 0 6166 5475 369 0 0 0 chr3 118696090 118696131 -108828447 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 4037 148 43 7 chr3 118696131 118696191 -108828387 - L1PA16 LINE L1 -691 5475 5419 23 101 0 0 chr3 118696310 118696389 -108828189 + AT_rich Low_complexity Low_complexity 1 79 0 329 382 7 0 chr3 118696824 118696968 -108827610 - ERVL LTR ERVL -1482 4282 4138 6066 99 5 16 chr3 118697937 118698687 -108825891 - L1PA10 LINE L1 -16 6152 5396 2082 100 7 4 chr3 118698687 118698968 -108825610 - AluY SINE Alu -16 295 14 6066 99 5 16 chr3 118698968 118699157 -108825421 - L1PA10 LINE L1 -772 5396 5206 3594 136 3 34 chr3 118699259 118699885 -108824693 - L1PA10 LINE L1 -1110 5036 4430 1962 193 41 24 chr3 118699885 118700427 -108824151 + MLT2A2 LTR ERVL 1 554 0 5387 133 1 29 chr3 118700427 118700916 -108823662 - L1PA10 LINE L1 -1712 4434 3979 2175 85 4 0 chr3 118700916 118701224 -108823354 - AluY SINE Alu 0 309 1 5387 133 1 29 chr3 118701224 118701642 -108822936 - L1PA10 LINE L1 -2167 3979 3551 3431 61 5 0 chr3 118701989 118702432 -108822146 - L1PA7 LINE L1 -2 6152 5708 1724 52 0 0 chr3 118702548 118702758 -108821820 + THE1B-int LTR MaLR 1371 1580 0 2594 104 3 6 chr3 118702758 118703122 -108821456 + THE1B LTR MaLR 1 363 -1 638 283 5 27 chr3 118703170 118703357 -108821221 - L2 LINE L2 -27 3286 3104 269 293 72 54 chr3 118703435 118703575 -108821003 - L1MC4 LINE L1 -1 8041 7894 237 65 0 0 chr3 118703575 118703606 -108820972 + (CA)n Simple_repeat Simple_repeat 1 31 0 269 293 72 54 chr3 118703606 118703687 -108820891 - L1MC4 LINE L1 -148 7894 7816 274 170 0 38 chr3 118703790 118703843 -108820735 + MER5A DNA MER1_type 117 167 -22 246 196 217 11 chr3 118704445 118704537 -108820041 - MER103 DNA DNA -44 122 12 362 288 181 6 chr3 118704628 118704788 -108819790 + MER5A DNA MER1_type 1 188 -1 31 44 0 0 chr3 118705051 118705096 -108819482 + AT_rich Low_complexity Low_complexity 1 45 0 574 89 0 0 chr3 118705100 118705179 -108819399 + MADE1 DNA Mariner 2 80 0 292 278 53 43 chr3 118705240 118705449 -108819129 - HAL1 LINE L1 -28 2479 2269 462 313 103 35 chr3 118705621 118705988 -108818590 - HAL1 LINE L1 -501 2006 1615 486 284 74 57 chr3 118706013 118706608 -108817970 - HAL1 LINE L1 -1028 1479 875 280 356 68 8 chr3 118707668 118707786 -108816792 - MIR SINE MIR -115 147 23 390 238 10 30 chr3 118707832 118707933 -108816645 - MER45C DNA AcHobo -5 948 850 2264 218 150 33 chr3 118708047 118709296 -108815282 - MER45R DNA AcHobo -133 1448 2 37 23 0 0 chr3 118709950 118709994 -108814584 + AT_rich Low_complexity Low_complexity 1 44 0 2122 99 20 3 chr3 118710369 118710662 -108813916 - AluSg SINE Alu -12 298 1 333 282 75 69 chr3 118710700 118710874 -108813704 - MIR SINE MIR -87 175 1 269 322 25 8 chr3 118711018 118711139 -108813439 - MER103 DNA DNA -6 160 38 27 0 0 0 chr3 118711262 118711289 -108813289 + AT_rich Low_complexity Low_complexity 1 27 0 387 256 28 91 chr3 118713133 118713309 -108811269 + MER5A DNA MER1_type 1 165 -24 937 237 86 43 chr3 118713399 118713823 -108810755 - MLT1B LTR MaLR 0 390 3 2212 143 8 27 chr3 118714422 118714793 -108809785 - THE1B LTR MaLR 0 364 1 1232 277 50 95 chr3 118714793 118715414 -108809164 - MLT1E LTR MaLR 0 593 1 965 176 11 6 chr3 118716909 118717085 -108807493 - MER45A DNA AcHobo 0 178 2 489 327 112 0 chr3 118717516 118717739 -108806839 + MIR SINE MIR 4 251 -11 5766 110 8 4 chr3 118719583 118720420 -108804158 - L1PA12 LINE L1 -2 6166 5326 4374 147 7 51 chr3 118720417 118721266 -108803312 + L1PA12 LINE L1 4519 5330 -816 * 21 36 0 0 chr3 118722566 118722594 -108801984 + AT_rich Low_complexity Low_complexity 1 28 0 1531 83 46 0 chr3 118722594 118722834 -108801744 - L1MA1 LINE L1 -4 6298 6048 213 65 0 0 chr3 118723760 118723791 -108800787 + (TTTTTG)n Simple_repeat Simple_repeat 2 32 0 2082 149 130 0 chr3 118723838 118724214 -108800364 - MSTB LTR MaLR 0 426 2 218 347 32 32 chr3 118724221 118724345 -108800233 + MIR SINE MIR 18 141 -121 517 315 40 15 chr3 118724561 118724761 -108799817 - MLT1G1 LTR MaLR -388 207 3 518 308 51 34 chr3 118724909 118725143 -108799435 + MIR SINE MIR 15 252 -10 417 232 64 40 chr3 118727842 118727957 -108796621 - MIR SINE MIR -26 236 116 2199 84 3 38 chr3 118727957 118728277 -108796301 + AluSc SINE Alu 1 309 0 654 84 28 0 chr3 118728290 118728397 -108796181 + (GAAA)n Simple_repeat Simple_repeat 4 113 0 218 230 241 23 chr3 118728415 118728502 -108796076 - MIR SINE MIR -142 120 15 203 325 100 85 chr3 118729101 118729442 -108795136 + L2 LINE L2 2827 3172 -100 2131 154 22 0 chr3 118730308 118730664 -108793914 + THE1B LTR MaLR 1 364 0 373 258 70 31 chr3 118730839 118730967 -108793611 - MLT1G LTR MaLR 0 595 463 455 175 41 31 chr3 118731059 118731156 -108793422 - MLT1G LTR MaLR -312 278 181 216 233 14 41 chr3 118731342 118731415 -108793163 + CT-rich Low_complexity Low_complexity 2 72 0 1179 265 36 10 chr3 118731442 118731834 -108792744 - L1ME1 LINE L1 -65 6170 5769 431 122 19 5 chr3 118731834 118731920 -108792658 + MLT-int LTR MaLR 15 101 -1270 1400 199 62 33 chr3 118731921 118732258 -108792320 + THE1C LTR MaLR 28 374 -1 8596 184 18 10 chr3 118732259 118733897 -108790681 + THE1C-int LTR MaLR 1 1651 0 1533 181 60 30 chr3 118733897 118734261 -108790317 + THE1C LTR MaLR 1 375 0 2831 276 45 63 chr3 118734261 118735549 -108789029 + MLT1A2-int LTR MaLR 99 1363 -8 1020 245 32 70 chr3 118735559 118735944 -108788634 + MLT1A2 LTR MaLR 4 467 0 1291 246 79 48 chr3 118735946 118736466 -108788112 - L1ME1 LINE L1 -458 5775 5230 913 202 239 21 chr3 118736466 118736709 -108787869 + AluJo SINE Alu 1 296 -6 1291 246 79 48 chr3 118736709 118737132 -108787446 - L1ME1 LINE L1 -1003 5230 4821 1072 248 31 0 chr3 118737133 118737391 -108787187 - AluJo SINE Alu -4 308 43 1732 249 82 22 chr3 118737393 118738060 -108786518 - L1ME1 LINE L1 -1380 4835 4129 1878 275 83 32 chr3 118738085 118739553 -108785025 - L1ME1 LINE L1 -2616 3599 2100 1477 279 106 40 chr3 118739590 118740648 -108783930 - L1MEc LINE L1 -3520 3421 2434 2114 109 0 26 chr3 118740648 118740950 -108783628 + AluSx SINE Alu 1 294 -18 1477 279 106 40 chr3 118740950 118741155 -108783423 - L1MEc LINE L1 -4507 2434 2244 333 0 0 0 chr3 118741155 118741192 -108783386 + (TG)n Simple_repeat Simple_repeat 1 37 0 243 0 0 0 chr3 118741191 118741218 -108783360 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 1477 279 106 40 chr3 118741192 118741492 -108783086 - L1MEc LINE L1 -4697 2244 1815 235 333 8 0 chr3 118741489 118741621 -108782957 - L1MEc LINE L1 -5061 1883 1751 * 208 150 62 0 chr3 118741839 118741919 -108782659 + (TA)n Simple_repeat Simple_repeat 2 86 0 10199 186 44 12 chr3 118742010 118747145 -108777433 - L1MA2 LINE L1 0 7723 19 427 284 80 28 chr3 118747151 118747401 -108777177 - L1MEc LINE L1 -5114 1309 1047 508 275 53 12 chr3 118747719 118747890 -108776688 - L1MEc LINE L1 -5986 437 260 470 238 22 43 chr3 118747907 118748092 -108776486 - L1MEc LINE L1 -6222 201 21 203 61 30 0 chr3 118749694 118749727 -108774851 + (TG)n Simple_repeat Simple_repeat 2 35 0 3484 156 38 3 chr3 118751761 118752391 -108772187 - L1MA6 LINE L1 -16 6284 5633 248 216 20 20 chr3 118752577 118752628 -108771950 - L2 LINE L2 -32 3240 3190 275 358 124 16 chr3 118752830 118753137 -108771441 - L2 LINE L2 -504 2810 2471 246 62 0 0 chr3 118753144 118753176 -108771402 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 2460 78 0 0 chr3 118753219 118753528 -108771050 - AluSc SINE Alu 0 309 1 1937 108 4 0 chr3 118753870 118754130 -108770448 - AluSg SINE Alu -11 299 39 24 0 0 0 chr3 118754140 118754164 -108770414 + AT_rich Low_complexity Low_complexity 1 24 0 2347 80 17 0 chr3 118754852 118755154 -108769424 - AluSc SINE Alu -2 307 1 1824 146 165 5 chr3 118755814 118756183 -108768395 - MSTA LTR MaLR 0 428 1 27 0 0 0 chr3 118756414 118756441 -108768137 + AT_rich Low_complexity Low_complexity 1 27 0 284 358 64 34 chr3 118756744 118756861 -108767717 - L1ME3A LINE L1 -208 5962 5850 1605 231 34 71 chr3 118756861 118757399 -108767179 - MLT2B1 LTR ERVL -2 518 1 284 358 64 34 chr3 118757399 118757747 -108766831 - L1ME3A LINE L1 -320 5850 5483 720 292 40 0 chr3 118757762 118757988 -108766590 + MIR SINE MIR 3 237 -25 1674 193 0 23 chr3 118758014 118758315 -108766263 + AluJo SINE Alu 2 295 -17 770 306 117 61 chr3 118758429 118759250 -108765328 - L1ME3A LINE L1 -784 5362 4425 1516 194 41 17 chr3 118759250 118759544 -108765034 - AluJb SINE Alu -9 303 3 770 306 117 61 chr3 118759544 118759907 -108764671 - L1ME3A LINE L1 -1721 4425 4084 1223 301 85 40 chr3 118759972 118760755 -108763823 - L2 LINE L2 -45 3268 2471 477 0 0 0 chr3 118760883 118760936 -108763642 + (TA)n Simple_repeat Simple_repeat 2 54 0 292 237 26 9 chr3 118762528 118762642 -108761936 + (TA)n Simple_repeat Simple_repeat 1 116 0 2430 83 0 0 chr3 118763665 118763966 -108760612 - AluY SINE Alu -10 301 1 1899 184 37 8 chr3 118764581 118764934 -108759644 - MLT1A1 LTR MaLR -2 363 1 324 226 44 25 chr3 118765158 118765317 -108759261 + Charlie7 DNA MER1_type 2440 2601 -11 1512 229 64 38 chr3 118765620 118766044 -108758534 - LTR40b LTR ERVL -24 438 4 1377 272 84 89 chr3 118766132 118766896 -108757682 + MER45C DNA AcHobo 1 779 -174 960 229 89 3 chr3 118767002 118767295 -108757283 + MER45B DNA AcHobo 711 1028 -12 1045 320 142 57 chr3 118767387 118768222 -108756356 + L2 LINE L2 1457 2412 -902 2135 103 3 33 chr3 118768222 118768523 -108756055 - AluSc SINE Alu -17 292 1 1045 320 142 57 chr3 118768523 118768801 -108755777 + L2 LINE L2 2412 2665 -649 466 216 43 74 chr3 118768921 118769164 -108755414 + MER41B LTR ERV1 55 430 -205 4166 159 11 7 chr3 118770495 118770590 -108753988 + MER50 LTR ERV1 1 94 -640 2101 142 0 3 chr3 118770590 118770901 -108753677 - AluSx SINE Alu -2 310 1 4166 159 11 7 chr3 118770901 118771511 -108753067 + MER50 LTR ERV1 94 709 -25 2279 182 58 2 chr3 118771809 118771833 -108752745 + LOR1b LTR ERV1 4 25 -436 192 40 0 0 chr3 118771833 118771858 -108752720 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2279 182 58 2 chr3 118771858 118772267 -108752311 + LOR1b LTR ERV1 25 461 0 208 239 0 0 chr3 118773433 118773479 -108751099 + (TG)n Simple_repeat Simple_repeat 2 47 0 291 221 76 44 chr3 118773914 118774072 -108750506 - L1ME4a LINE L1 0 6121 5959 21 36 0 0 chr3 118774088 118774116 -108750462 + AT_rich Low_complexity Low_complexity 1 28 0 323 254 127 0 chr3 118774130 118774248 -108750330 - L1ME4a LINE L1 -158 5963 5831 2097 110 13 13 chr3 118774248 118774556 -108750022 - AluSg SINE Alu 0 310 3 347 257 21 49 chr3 118774673 118774817 -108749761 - L1ME4a LINE L1 -94 6027 5888 2595 168 43 8 chr3 118775299 118775769 -108748809 - MER66B LTR ERV1 0 486 1 2529 213 75 34 chr3 118776037 118776869 -108747709 - MER69 DNA AcHobo 0 2526 1661 1074 241 38 51 chr3 118776900 118777294 -108747284 - L1ME2 LINE L1 -20 6144 5756 237 140 100 0 chr3 118777372 118777422 -108747156 - L1M4 LINE L1 -1219 4927 4873 645 240 102 39 chr3 118777498 118778046 -108746532 - L1ME2 LINE L1 -444 5720 5135 270 251 50 56 chr3 118778090 118778269 -108746309 - L1ME2 LINE L1 -1110 5036 4859 2116 172 40 136 chr3 118778383 118778451 -108746127 + MLT2B3 LTR ERVL 8 81 -473 1878 159 7 3 chr3 118778451 118778740 -108745838 + AluSx SINE Alu 4 293 -19 2116 172 40 136 chr3 118778740 118779276 -108745302 + MLT2B3 LTR ERVL 81 554 0 312 255 11 0 chr3 118779320 118779414 -108745164 - L1ME2 LINE L1 -1519 4627 4533 2399 70 0 0 chr3 118779446 118779746 -108744832 - AluY SINE Alu -11 300 1 1024 234 155 33 chr3 118779746 118780353 -108744225 - L1ME2 LINE L1 -1598 4548 3868 1754 229 42 29 chr3 118780362 118780817 -108743761 + MLT1C LTR MaLR 6 466 -1 427 310 94 33 chr3 118780863 118781076 -108743502 - LTR16A LTR ERVL -15 435 210 516 344 43 26 chr3 118781443 118781864 -108742714 - ERVL LTR ERVL -558 5206 4779 1762 206 22 11 chr3 118781867 118782222 -108742356 - MLT1A1 LTR MaLR -6 359 1 6820 204 68 57 chr3 118782222 118783924 -108740654 - MLT1A1-int LTR MaLR 0 1735 16 2081 168 11 22 chr3 118783951 118784320 -108740258 - MLT1A1 LTR MaLR 0 365 1 731 303 63 38 chr3 118784369 118784894 -108739684 - ERVL LTR ERVL -628 4435 3841 267 192 0 14 chr3 118785018 118785066 -108739512 + (TTA)n Simple_repeat Simple_repeat 1 49 -23 2510 60 0 0 chr3 118785066 118785364 -108739214 + AluY SINE Alu 1 298 -13 267 192 0 14 chr3 118785364 118785388 -108739190 + (TTA)n Simple_repeat Simple_repeat 49 72 0 2039 109 13 20 chr3 118786541 118786844 -108737734 - AluSx SINE Alu -11 301 1 183 256 78 67 chr3 118787711 118787801 -108736777 - L2 LINE L2 -22 3291 3201 483 333 24 0 chr3 118788019 118788187 -108736391 + MIR SINE MIR 76 247 -15 1078 142 96 5 chr3 118788576 118788795 -108735783 - L1MC1 LINE L1 0 6333 6095 22 0 0 0 chr3 118789064 118789086 -108735492 + AT_rich Low_complexity Low_complexity 1 22 0 1112 201 164 28 chr3 118790190 118790508 -108734070 - MLT1A1 LTR MaLR -4 361 1 212 346 75 25 chr3 118790687 118790846 -108733732 + MIR SINE MIR 1 167 -95 2283 88 0 3 chr3 118792602 118792897 -108731681 + AluSc SINE Alu 1 294 -15 379 327 108 22 chr3 118793098 118793321 -108731257 + MIR SINE MIR 4 245 -17 348 213 125 44 chr3 118793602 118793738 -108730840 - L1MEc LINE L1 -6034 362 216 193 274 189 0 chr3 118793945 118794040 -108730538 + MIR SINE MIR 87 199 -63 22 56 0 0 chr3 118794639 118794675 -108729903 + AT_rich Low_complexity Low_complexity 1 36 0 224 390 163 0 chr3 118795364 118795487 -108729091 - L2 LINE L2 -1 3271 3129 196 274 39 0 chr3 118795501 118795552 -108729026 - MIR SINE MIR 0 262 210 275 246 8 0 chr3 118795739 118795865 -108728713 + (TA)n Simple_repeat Simple_repeat 2 128 0 2308 153 63 0 chr3 118796078 118796477 -108728101 - L1PA16 LINE L1 -9 6157 5734 1581 132 8 77 chr3 118796478 118796849 -108727729 - MER4A LTR ERV1 0 664 261 562 115 42 21 chr3 118796849 118796945 -108727633 - MER4A LTR ERV1 -566 98 1 5693 192 20 6 chr3 118796945 118798639 -108725939 - L1PA16 LINE L1 -430 5736 4016 392 316 68 0 chr3 118798675 118798808 -108725770 - MIR SINE MIR -90 172 31 1001 299 82 21 chr3 118798836 118799260 -108725318 + LTR16A LTR ERVL 1 450 0 22 0 0 0 chr3 118799322 118799344 -108725234 + AT_rich Low_complexity Low_complexity 1 22 0 187 388 69 9 chr3 118799580 118799696 -108724882 + MIR SINE MIR 29 151 -57 29 28 0 0 chr3 118800488 118800524 -108724054 + AT_rich Low_complexity Low_complexity 1 36 0 192 298 91 50 chr3 118800547 118800668 -108723910 - L2 LINE L2 -940 2374 2249 2488 74 0 0 chr3 118800766 118801077 -108723501 - AluY SINE Alu 0 311 1 200 316 105 30 chr3 118801079 118801212 -108723366 + L2 LINE L2 3162 3304 -9 27 29 0 0 chr3 118801253 118801287 -108723291 + AT_rich Low_complexity Low_complexity 1 34 0 23 54 0 0 chr3 118802292 118802329 -108722249 + AT_rich Low_complexity Low_complexity 1 37 0 226 239 56 0 chr3 118802434 118802505 -108722073 + L1ME4a LINE L1 6011 6085 -36 29 84 0 0 chr3 118802551 118802622 -108721956 + AT_rich Low_complexity Low_complexity 1 71 0 1508 237 58 38 chr3 118802766 118803214 -108721364 + MLT1C LTR MaLR 11 467 0 4382 167 29 40 chr3 118803527 118803727 -108720851 - L1PB4 LINE L1 -14 6844 6643 2023 119 61 0 chr3 118803727 118804022 -108720556 - AluSp SINE Alu 0 313 1 4382 167 29 40 chr3 118804022 118804502 -108720076 - L1PB4 LINE L1 -215 6643 6176 210 37 0 0 chr3 118804502 118804529 -108720049 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 4382 167 29 40 chr3 118804529 118804899 -108719679 - L1PB4 LINE L1 -682 6176 5803 * 6992 250 71 21 chr3 118804893 118806268 -108718310 - L1PB4 LINE L1 -1903 4945 3640 2039 128 29 52 chr3 118806268 118806652 -108717926 - THE1C LTR MaLR 0 375 1 6992 250 71 21 chr3 118806652 118808522 -108716056 - L1PB4 LINE L1 -3208 3640 1404 2465 65 3 0 chr3 118808522 118808830 -108715748 - AluY SINE Alu -2 309 1 6992 250 71 21 chr3 118808830 118809205 -108715373 - L1PB4 LINE L1 -5444 1404 1049 378 426 63 29 chr3 118809772 118810262 -108714316 - L1PB4 LINE L1 -6333 516 10 366 23 0 0 chr3 118810262 118810305 -108714273 + (CA)n Simple_repeat Simple_repeat 2 44 0 255 148 49 25 chr3 118810820 118810901 -108713677 + (TTA)n Simple_repeat Simple_repeat 2 84 0 22 35 0 0 chr3 118811922 118811951 -108712627 + AT_rich Low_complexity Low_complexity 1 29 0 233 281 18 0 chr3 118813619 118813676 -108710902 + MIR3 SINE MIR 139 196 -12 2390 77 0 0 chr3 118813785 118814083 -108710495 + AluY SINE Alu 3 300 -11 672 278 46 16 chr3 118814371 118814677 -108709901 - Tigger8 DNA MER2_type -109 557 243 694 188 34 0 chr3 118817803 118817920 -108706658 + FLAM_C SINE Alu 1 121 -12 261 97 0 111 chr3 118817926 118817998 -108706580 + L1MC4 LINE L1 6640 6703 -1339 324 307 58 86 chr3 118819135 118819565 -108705013 - L2 LINE L2 -1 3312 2895 325 314 69 0 chr3 118820142 118820244 -108704334 - L2 LINE L2 -5 3308 3200 609 287 93 43 chr3 118820346 118820646 -108703932 - MLT1I LTR MaLR -24 385 71 350 289 96 10 chr3 118820701 118820805 -108703773 - L2 LINE L2 -259 3054 2942 2506 262 50 36 chr3 118820844 118821804 -108702774 + L1ME1 LINE L1 5143 6124 -42 1665 160 45 11 chr3 118821804 118822091 -108702487 + AluJb SINE Alu 1 297 -15 2506 262 50 36 chr3 118822091 118822130 -108702448 + L1ME1 LINE L1 6124 6161 -5 672 322 57 30 chr3 118822143 118822544 -108702034 - L2 LINE L2 -411 2903 2492 2309 97 0 0 chr3 118824189 118824487 -108700091 + AluSg SINE Alu 1 298 -12 384 130 13 13 chr3 118824487 118824556 -108700022 - L1MB7 LINE L1 -10 6174 6103 740 61 0 0 chr3 118824557 118824656 -108699922 + AluY SINE Alu 206 304 -7 1625 197 6 0 chr3 118824672 118824707 -108699871 - L1MB7 LINE L1 -90 6094 6060 4904 222 58 27 chr3 118824707 118826680 -108697898 - L1MC4 LINE L1 -497 5687 3960 1998 150 0 0 chr3 118826698 118827004 -108697574 + AluSq SINE Alu 1 306 -7 28 0 0 0 chr3 118827665 118827693 -108696885 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr3 118827830 118827861 -108696717 + AT_rich Low_complexity Low_complexity 1 31 0 338 324 17 28 chr3 118828695 118828871 -108695707 + L1ME LINE L1 352 525 -5891 312 323 44 12 chr3 118828856 118829021 -108695557 + L1ME LINE L1 1749 2019 -4526 * 482 224 11 126 chr3 118829021 118829195 -108695383 + MER45C DNA AcHobo 1 156 -797 257 367 13 0 chr3 118829291 118829370 -108695208 + MER45C DNA AcHobo 314 393 -560 536 248 45 15 chr3 118829383 118829516 -108695062 + MER45C DNA AcHobo 710 846 -107 28 48 0 0 chr3 118829614 118829656 -108694922 + AT_rich Low_complexity Low_complexity 1 42 0 1114 279 52 29 chr3 118829946 118830430 -108694148 + L1ME LINE L1 626 1120 -5296 893 248 63 109 chr3 118830437 118831462 -108693116 + L1ME LINE L1 2369 3341 -3085 * 3384 152 22 16 chr3 118831460 118832090 -108692488 + L1MA4 LINE L1 5367 6000 -300 310 232 21 0 chr3 118832094 118832189 -108692389 + L1MB3 LINE L1 6087 6183 0 1470 278 55 2 chr3 118832197 118832783 -108691795 + L1ME LINE L1 3348 3964 -2462 * 15328 165 19 13 chr3 118832777 118839057 -108685521 + L1MA2 LINE L1 1406 7723 0 770 270 81 6 chr3 118839075 118839549 -108685029 + L1ME LINE L1 3942 4464 -1962 905 262 125 7 chr3 118839571 118839979 -108684599 + L1ME LINE L1 4913 5368 -1058 819 297 102 41 chr3 118840106 118841004 -108683574 + L1ME LINE L1 4457 5409 -1017 1595 277 40 75 chr3 118841056 118842040 -108682538 + L1ME LINE L1 5495 6441 -9 232 175 25 0 chr3 118842056 118842118 -108682460 + (TA)n Simple_repeat Simple_repeat 2 68 -15 186 43 0 0 chr3 118842118 118842141 -108682437 + (GA)n Simple_repeat Simple_repeat 2 24 0 232 175 25 0 chr3 118842141 118842158 -108682420 + (TA)n Simple_repeat Simple_repeat 68 83 0 480 72 0 0 chr3 118842520 118842589 -108681989 + (CA)n Simple_repeat Simple_repeat 2 70 0 304 243 48 58 chr3 118842590 118842693 -108681885 - MER81 DNA DNA -7 107 6 27 0 0 0 chr3 118842762 118842789 -108681789 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr3 118843860 118843881 -108680697 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 118845688 118845711 -108678867 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr3 118846189 118846218 -108678360 + AT_rich Low_complexity Low_complexity 1 29 0 322 342 67 27 chr3 118846343 118846492 -108678086 + MIR SINE MIR 2 156 -106 27 0 0 0 chr3 118846566 118846593 -108677985 + AT_rich Low_complexity Low_complexity 1 27 0 31 0 0 0 chr3 118847894 118847925 -108676653 + AT_rich Low_complexity Low_complexity 1 31 0 1935 228 70 125 chr3 118848417 118849570 -108675008 + MER52A LTR ERV1 666 1755 0 590 164 49 0 chr3 118849690 118849812 -108674766 - L1MC3 LINE L1 -779 7006 6879 378 239 21 0 chr3 118849846 118849963 -108674615 - L1MD3 LINE L1 -1486 6335 6181 445 136 34 0 chr3 118849969 118850057 -108674521 + CT-rich Low_complexity Low_complexity 1 91 0 3506 205 18 18 chr3 118850059 118850380 -108674198 - L1MC3 LINE L1 -934 6851 6531 2172 131 0 0 chr3 118850380 118850677 -108673901 - AluSx SINE Alu -15 297 1 3506 205 18 18 chr3 118850677 118851134 -108673444 - L1MC3 LINE L1 -1253 6532 6073 657 122 10 0 chr3 118851139 118851237 -108673341 + MER66B LTR ERV1 6 104 -382 467 247 6 69 chr3 118851239 118851413 -108673165 + MER66A LTR ERV1 312 474 -4 751 195 75 136 chr3 118851420 118851846 -108672732 - L1MC3 LINE L1 -1712 6073 5674 195 42 0 0 chr3 118854192 118854216 -108670362 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1875 143 3 14 chr3 118855213 118855525 -108669053 - AluSx SINE Alu 0 309 1 22 0 0 0 chr3 118855601 118855623 -108668955 + AT_rich Low_complexity Low_complexity 1 22 0 2579 94 16 11 chr3 118855980 118856353 -108668225 + THE1C LTR MaLR 1 375 0 242 220 0 0 chr3 118856614 118856664 -108667914 + CT-rich Low_complexity Low_complexity 1 50 0 7756 175 9 14 chr3 118857425 118858990 -108665588 + L1PA13 LINE L1 3758 5319 -844 2276 119 3 0 chr3 118858990 118859293 -108665285 + AluSx SINE Alu 1 304 -8 7756 175 9 14 chr3 118859293 118860122 -108664456 + L1PA13 LINE L1 5319 6151 -12 191 35 0 35 chr3 118860261 118860290 -108664288 + (TCCC)n Simple_repeat Simple_repeat 2 29 0 183 114 0 57 chr3 118860291 118860326 -108664252 - MIR SINE MIR -26 236 204 1613 70 0 0 chr3 118860722 118860921 -108663657 + AluY SINE Alu 1 199 -112 1269 69 0 0 chr3 118860921 118861080 -108663498 + AluY SINE Alu 152 310 -1 622 226 21 48 chr3 118861627 118861813 -108662765 - LTR41 LTR ERVL -592 181 1 1133 245 57 6 chr3 118861904 118862235 -108662343 - Charlie1 DNA MER1_type -572 2189 1842 1161 222 14 21 chr3 118862311 118862599 -108661979 - Charlie1 DNA MER1_type -1037 1724 1439 2131 107 23 7 chr3 118863147 118863447 -108661131 - AluSx SINE Alu -7 305 1 184 409 0 0 chr3 118864585 118864695 -108659883 - L2 LINE L2 -589 2725 2616 22 35 0 0 chr3 118865029 118865058 -108659520 + AT_rich Low_complexity Low_complexity 1 29 0 2051 123 23 23 chr3 118865157 118865466 -108659112 - AluSc SINE Alu 0 309 1 895 349 52 12 chr3 118865857 118866264 -108658314 - LTR16A LTR ERVL -12 438 16 369 0 0 0 chr3 118867421 118867462 -108657116 + (TA)n Simple_repeat Simple_repeat 2 42 0 21 57 0 0 chr3 118867527 118867562 -108657016 + AT_rich Low_complexity Low_complexity 1 35 0 2053 122 54 23 chr3 118868036 118868389 -108656189 - THE1B LTR MaLR 0 364 1 180 267 22 0 chr3 118868852 118868897 -108655681 - MIR SINE MIR -114 148 103 2091 119 13 0 chr3 118868902 118869205 -108655373 + AluSg1 SINE Alu 1 307 -2 243 329 45 23 chr3 118870553 118870727 -108653851 + MLT1L LTR MaLR 1 186 -325 336 290 31 36 chr3 118870864 118871011 -108653567 + MLT1J LTR MaLR 287 535 -80 797 340 25 35 chr3 118871305 118871702 -108652876 - LTR16A LTR ERVL -6 444 52 971 332 51 16 chr3 118871733 118872161 -108652417 + LTR16A LTR ERVL 6 448 -2 2161 125 0 0 chr3 118872188 118872485 -108652093 - AluSx SINE Alu -15 297 1 315 315 0 0 chr3 118872496 118872569 -108652009 - MER63 DNA MER1_type -277 785 713 631 251 6 51 chr3 118872843 118873018 -108651560 + MER63A DNA MER1_type 44 210 0 1010 371 43 24 chr3 118873266 118874094 -108650484 - MERVL LTR ERVL -503 4982 4139 13013 194 10 10 chr3 118874216 118875057 -108649521 + L1PB1 LINE L1 2322 3162 -2989 207 0 0 0 chr3 118875057 118875080 -108649498 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 13013 194 10 10 chr3 118875080 118876102 -108648476 + L1PB1 LINE L1 3162 4183 -1968 2089 92 0 57 chr3 118876102 118876416 -108648162 + AluY SINE Alu 1 296 -15 13013 194 10 10 chr3 118876416 118878369 -108646209 + L1PB1 LINE L1 4183 6136 -15 33 25 0 0 chr3 118878373 118878413 -108646165 + AT_rich Low_complexity Low_complexity 1 40 0 25 75 0 0 chr3 118878439 118878492 -108646086 + AT_rich Low_complexity Low_complexity 1 53 0 240 302 0 0 chr3 118878683 118878746 -108645832 - LTR16A LTR ERVL -6 444 382 1095 103 0 0 chr3 118878852 118878997 -108645581 + AluSg SINE Alu 58 202 -108 501 311 11 73 chr3 118879000 118879260 -108645318 - LTR16A LTR ERVL -184 266 23 414 278 70 0 chr3 118879284 118879399 -108645179 + L2 LINE L2 3149 3271 -1 219 190 17 86 chr3 118879548 118879606 -108644972 - L2 LINE L2 0 3272 3219 2240 89 3 0 chr3 118880083 118880374 -108644204 - AluSg SINE Alu -18 292 1 478 63 0 0 chr3 118880927 118880990 -108643588 + Alu SINE Alu 1 63 -247 1087 67 0 0 chr3 118880990 118881125 -108643453 + AluSp/q SINE Alu 166 300 -13 564 219 137 34 chr3 118881648 118881794 -108642784 - MER5A DNA MER1_type -6 183 23 1812 154 19 38 chr3 118883553 118883924 -108640654 - THE1B LTR MaLR 0 364 1 185 250 42 0 chr3 118884045 118884093 -108640485 - MER5B DNA MER1_type -1 177 128 376 253 33 11 chr3 118884159 118884250 -108640328 - MER5B DNA MER1_type -43 135 43 2128 138 19 26 chr3 118885620 118885998 -108638580 + THE1C LTR MaLR 1 375 0 430 129 35 16 chr3 118886512 118886607 -108637971 - MLT1A1 LTR MaLR -264 110 14 243 394 108 12 chr3 118886621 118886862 -108637716 + L2 LINE L2 2804 3067 -205 285 416 7 15 chr3 118886961 118887098 -108637480 - MIR SINE MIR -115 147 12 21 0 0 0 chr3 118888284 118888305 -108636273 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 118889212 118889235 -108635343 + AT_rich Low_complexity Low_complexity 1 23 0 187 422 0 0 chr3 118890215 118890279 -108634299 + L2 LINE L2 3161 3224 -48 300 356 64 0 chr3 118890332 118890520 -108634058 - MIR SINE MIR -14 248 49 375 292 92 25 chr3 118890700 118890984 -108633594 - L1MC/D LINE L1 -1985 5823 5521 323 301 71 26 chr3 118891097 118891523 -108633055 - L1MC/D LINE L1 -748 5398 4949 2161 130 0 10 chr3 118891523 118891831 -108632747 - AluSc SINE Alu -4 305 1 323 301 71 26 chr3 118891831 118891856 -108632722 - L1MC/D LINE L1 -1197 4949 4927 767 87 0 0 chr3 118892021 118892124 -108632454 + AluSg/x SINE Alu 203 305 -7 5057 139 26 52 chr3 118892298 118893352 -108631226 - L1PA16 LINE L1 0 6166 5144 3454 189 11 28 chr3 118893351 118893655 -108630923 + L1 LINE L1 3639 3947 -2199 * 2097 113 3 3 chr3 118893655 118893948 -108630630 + AluY SINE Alu 12 304 -7 3454 189 11 28 chr3 118893948 118894423 -108630155 + L1 LINE L1 3947 4405 -1741 360 280 48 97 chr3 118894686 118894872 -108629706 - MER5B DNA MER1_type -1 177 1 1937 163 0 7 chr3 118895228 118895529 -108629049 - AluJb SINE Alu -13 299 1 2385 67 0 7 chr3 118895595 118895892 -108628686 + AluY SINE Alu 1 295 -16 26 0 0 0 chr3 118897565 118897591 -108626987 + AT_rich Low_complexity Low_complexity 1 26 0 2211 111 0 0 chr3 118897598 118897905 -108626673 - AluSc SINE Alu -2 307 1 612 327 30 30 chr3 118898150 118898419 -108626159 + L3 LINE CR1 637 905 -672 1325 75 4 6 chr3 118898510 118898749 -108625829 - AluY SINE Alu -22 289 1 3406 138 119 115 chr3 118898753 118900044 -108624534 - pTR5 LTR ERV1 -23 1683 34 277 115 173 0 chr3 118900045 118900097 -108624481 - pTR5 LTR ERV1 -1637 801 741 317 271 17 113 chr3 118900205 118900382 -108624196 + MIR3 SINE MIR 46 205 -3 22 0 0 0 chr3 118900383 118900405 -108624173 + AT_rich Low_complexity Low_complexity 1 22 0 401 262 92 43 chr3 118900834 118900998 -108623580 - MIR SINE MIR 0 262 91 190 327 0 0 chr3 118901171 118901223 -108623355 + MIR3 SINE MIR 135 186 -22 1184 253 17 10 chr3 118901323 118901620 -108622958 + L1M3e LINE L1 1 299 -6731 2612 257 57 44 chr3 118901623 118904771 -108619807 + L1M3e LINE L1 1017 3803 -3303 21 0 0 0 chr3 118905428 118905449 -108619129 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 118905522 118905546 -108619032 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 118905578 118905606 -108618972 + AT_rich Low_complexity Low_complexity 1 28 0 194 88 0 29 chr3 118906014 118906048 -108618530 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 1846 168 42 17 chr3 118906293 118906651 -108617927 - L1PA16 LINE L1 -8 6158 5792 188 67 33 0 chr3 118907022 118907052 -108617526 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 367 137 27 0 chr3 118908302 118908375 -108616203 + CT-rich Low_complexity Low_complexity 2 76 0 21 0 0 0 chr3 118909863 118909884 -108614694 + AT_rich Low_complexity Low_complexity 1 21 0 290 313 74 21 chr3 118910044 118910287 -108614291 + L1MC/D LINE L1 5332 5587 -772 2181 107 0 3 chr3 118911017 118911317 -108613261 - AluSx SINE Alu -13 299 1 464 346 62 10 chr3 118912429 118912637 -108611941 + MIR SINE MIR 32 250 -12 1514 211 56 12 chr3 118913388 118913730 -108610848 + MLT1A1 LTR MaLR 9 365 0 2084 177 76 5 chr3 118913915 118914310 -108610268 - MSTB LTR MaLR -3 423 1 252 345 59 8 chr3 118914680 118914799 -108609779 + MIR SINE MIR 20 144 -64 534 265 25 169 chr3 118914802 118915470 -108609108 + L2 LINE L2 2133 2704 -610 234 267 22 33 chr3 118915603 118915693 -108608885 + C-rich Low_complexity Low_complexity 2 90 0 2110 80 11 0 chr3 118915859 118916134 -108608444 - AluSg SINE Alu -8 302 25 536 260 156 7 chr3 118916422 118916576 -108608002 - MER5A DNA MER1_type -1 188 12 5468 140 53 82 chr3 118916672 118917939 -108606639 + Tigger3b DNA MER2_type 2 1231 0 2120 103 0 35 chr3 118918371 118918690 -108605888 + AluSg1 SINE Alu 1 308 -1 23 0 0 0 chr3 118918818 118918841 -108605737 + AT_rich Low_complexity Low_complexity 1 23 0 816 287 0 18 chr3 118918899 118919122 -108605456 - MIR SINE MIR -12 250 32 729 256 50 0 chr3 118919171 118919351 -108605227 + MER5A DNA MER1_type 1 189 0 1977 234 26 24 chr3 118919766 118920257 -108604321 - LTR40a LTR ERVL -24 495 4 21 0 0 0 chr3 118920518 118920539 -108604039 + AT_rich Low_complexity Low_complexity 1 21 0 215 149 0 21 chr3 118921129 118921176 -108603402 + (GGAA)n Simple_repeat Simple_repeat 3 48 0 22 35 0 0 chr3 118921667 118921696 -108602882 + AT_rich Low_complexity Low_complexity 1 29 0 1116 264 49 58 chr3 118921893 118922447 -108602131 - MLT1H LTR MaLR 0 549 1 10960 234 68 35 chr3 118922826 118926325 -108598253 - L1P LINE L1 -783 5363 1752 32 26 0 0 chr3 118926602 118926641 -108597937 + AT_rich Low_complexity Low_complexity 1 39 0 227 311 115 20 chr3 118926998 118927146 -108597432 - MIR SINE MIR -13 249 88 201 259 0 0 chr3 118927512 118927570 -108597008 + (TA)n Simple_repeat Simple_repeat 1 58 0 1118 113 0 0 chr3 118928919 118929070 -108595508 - AluSg SINE Alu -159 151 1 2157 126 19 0 chr3 118929476 118929786 -108594792 + HUERS-P3 LTR ERV1 6506 6821 -597 1641 123 48 0 chr3 118929785 118930036 -108594542 + HUERS-P3 LTR ERV1 8650 8912 -7 * 2530 124 39 12 chr3 118930042 118930551 -108594027 + LTR9B LTR ERV1 1 560 -84 209 56 0 28 chr3 118930552 118930588 -108593990 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 304 313 0 0 chr3 118931141 118931224 -108593354 - L2 LINE L2 -5 3267 3185 664 288 33 19 chr3 118931465 118931677 -108592901 - L2 LINE L2 -421 2893 2679 201 356 115 19 chr3 118931772 118931876 -108592702 - L2 LINE L2 -25 3247 3134 1599 98 23 12 chr3 118932116 118932372 -108592206 - L1MA8 LINE L1 0 6291 6033 492 349 139 29 chr3 118932374 118932970 -108591608 - L2 LINE L2 -602 2712 2051 1314 265 33 35 chr3 118933021 118933474 -108591104 - LTR40c LTR ERVL -7 458 7 408 308 27 7 chr3 118933481 118933627 -108590951 - L2 LINE L2 -1345 1969 1821 2089 110 17 3 chr3 118933627 118933928 -108590650 + AluSq SINE Alu 1 305 -8 240 111 0 0 chr3 118933938 118933974 -108590604 + (A)n Simple_repeat Simple_repeat 1 36 0 21 0 0 0 chr3 118934025 118934046 -108590532 + AT_rich Low_complexity Low_complexity 1 21 0 1609 177 143 31 chr3 118934228 118934647 -108589931 + MLT1C LTR MaLR 1 466 -1 2180 109 7 3 chr3 118934766 118935059 -108589519 - AluSx SINE Alu -18 294 1 21 71 0 0 chr3 118937112 118937154 -108587424 + AT_rich Low_complexity Low_complexity 1 42 0 2550 97 21 21 chr3 118937223 118937596 -108586982 - THE1C LTR MaLR -2 373 1 23 68 0 0 chr3 118937607 118937651 -108586927 + AT_rich Low_complexity Low_complexity 1 44 0 462 283 114 12 chr3 118938396 118938562 -108586016 - MARNA DNA Mariner -88 498 316 234 299 254 15 chr3 118938689 118938823 -108585755 - MER5B DNA MER1_type -6 172 7 258 258 43 32 chr3 118940407 118940500 -108584078 + MER21B LTR ERV1 3 96 -767 390 240 13 0 chr3 118940506 118940581 -108583997 + MER21B LTR ERV1 19 94 -769 * 2110 197 35 11 chr3 118940579 118941179 -108583399 + MER21B LTR ERV1 43 756 -107 23 0 0 0 chr3 118941446 118941469 -108583109 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr3 118941673 118941705 -108582873 + AT_rich Low_complexity Low_complexity 1 32 0 221 128 21 0 chr3 118942459 118942506 -108582072 + (TG)n Simple_repeat Simple_repeat 2 49 0 1324 116 5 0 chr3 118942649 118942839 -108581739 - THE1A LTR MaLR 0 355 165 2482 81 44 12 chr3 118942871 118943215 -108581363 - THE1A LTR MaLR 0 355 1 11184 98 16 12 chr3 118943215 118943521 -108581057 - THE1A-int LTR MaLR 0 1580 1277 2373 82 0 3 chr3 118943521 118943815 -108580763 - AluY SINE Alu -18 293 1 11184 98 16 12 chr3 118943815 118945082 -108579496 - THE1A-int LTR MaLR -303 1277 1 2346 77 65 9 chr3 118945082 118945418 -108579160 - THE1A LTR MaLR 0 355 1 272 295 77 39 chr3 118946306 118946462 -108578116 - MIR SINE MIR -54 208 47 396 0 0 0 chr3 118946512 118946556 -108578022 + (TG)n Simple_repeat Simple_repeat 1 44 0 216 0 0 0 chr3 118946587 118946611 -108577967 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 340 235 59 0 chr3 118947051 118947136 -108577442 - MER117 DNA MER1_type -101 96 7 248 167 205 13 chr3 118948870 118948948 -108575630 - MIR SINE MIR -20 242 150 326 302 13 13 chr3 118949051 118949210 -108575368 + (CATATA)n Simple_repeat Simple_repeat 6 164 0 595 251 66 27 chr3 118949212 118949395 -108575183 - MIR SINE MIR -69 193 4 33 43 0 0 chr3 118949643 118949690 -108574888 + AT_rich Low_complexity Low_complexity 1 47 0 26 0 0 0 chr3 118949999 118950025 -108574553 + AT_rich Low_complexity Low_complexity 1 26 0 725 151 25 19 chr3 118950025 118950184 -108574394 - L1MA5A LINE L1 0 6297 6138 41 0 0 0 chr3 118950707 118950748 -108573830 + AT_rich Low_complexity Low_complexity 1 41 0 1333 159 51 73 chr3 118951543 118951857 -108572721 + MER49 LTR ERV1 1 307 -616 2618 180 41 89 chr3 118951910 118952438 -108572140 + MER4D LTR ERV1 249 738 -165 3898 93 15 0 chr3 118952438 118952984 -108571594 - MER41A LTR ERV1 0 554 1 2618 180 41 89 chr3 118952984 118953143 -108571435 + MER4D LTR ERV1 738 903 0 259 248 60 8 chr3 118953169 118953302 -108571276 - L1ME4a LINE L1 -5 6116 5977 203 217 22 0 chr3 118954056 118954102 -108570476 + MIR SINE MIR 216 262 0 21 36 0 0 chr3 118954500 118954528 -108570050 + AT_rich Low_complexity Low_complexity 1 28 0 1527 298 181 21 chr3 118955379 118956191 -108568387 + L2 LINE L2 1240 2181 -1133 792 315 116 49 chr3 118956696 118957501 -108567077 + L2 LINE L2 2384 3257 -56 201 345 0 0 chr3 118958483 118958541 -108566037 + (GACTG)n Simple_repeat Simple_repeat 2 59 0 196 315 37 0 chr3 118958597 118958651 -108565927 + L2 LINE L2 3215 3270 -2 463 198 0 12 chr3 118958835 118958916 -108565662 + AluJ/FLAM SINE Alu 1 80 -232 1020 136 0 37 chr3 118958916 118959078 -108565500 + AluJo/FRAM SINE Alu 147 302 -10 265 317 103 29 chr3 118959363 118959713 -108564865 + L1ME LINE L1 5298 5673 -489 632 247 65 5 chr3 118959848 118960034 -108564544 - L2 LINE L2 -4 3309 3113 27 49 0 0 chr3 118960201 118960242 -108564336 + AT_rich Low_complexity Low_complexity 1 41 0 332 297 0 2 chr3 118960623 118960770 -108563808 + MER63 DNA MER1_type 38 1688 0 251 330 112 5 chr3 118961099 118961287 -108563291 - L2 LINE L2 -4 3309 3102 34 0 0 0 chr3 118963076 118963110 -108561468 + AT_rich Low_complexity Low_complexity 1 34 0 326 264 23 0 chr3 118963113 118963200 -108561378 + L1MC4 LINE L1 6614 6702 -1340 673 312 5 0 chr3 118963292 118963478 -108561100 - MER5A DNA MER1_type 0 189 3 206 326 12 35 chr3 118963755 118963841 -108560737 - MIR SINE MIR -111 151 68 365 305 96 30 chr3 118964164 118964331 -108560247 + MIR3 SINE MIR 5 182 -26 204 40 0 0 chr3 118965768 118965793 -108558785 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 22 0 0 0 chr3 118966277 118966299 -108558279 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr3 118966566 118966601 -108557977 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr3 118966698 118966729 -108557849 + AT_rich Low_complexity Low_complexity 1 31 0 2544 52 0 0 chr3 118967292 118967598 -108556980 + AluY SINE Alu 1 306 -5 184 197 141 84 chr3 118967683 118967754 -108556824 + L2 LINE L2 1366 1440 -1874 221 408 39 0 chr3 118968078 118968181 -108556397 + L2 LINE L2 3147 3253 -19 188 333 0 0 chr3 118968308 118968362 -108556216 + L3b LINE CR1 1528 1581 -2 2296 100 3 0 chr3 118968507 118968808 -108555770 - AluSq SINE Alu -11 302 1 1264 265 187 43 chr3 118968821 118968950 -108555628 - LTR41 LTR ERVL -9 764 655 2008 122 0 3 chr3 118968950 118969236 -108555342 + AluSg SINE Alu 7 291 -19 1264 265 187 43 chr3 118969236 118969774 -108554804 - LTR41 LTR ERVL -118 655 1 309 272 25 89 chr3 118970352 118970510 -108554068 + MIR SINE MIR 88 235 -27 263 367 20 0 chr3 118970791 118970889 -108553689 + MIR SINE MIR 53 152 -56 317 257 113 37 chr3 118970982 118971127 -108553451 + MIR SINE MIR 17 169 -39 214 191 24 0 chr3 118971222 118971264 -108553314 + GA-rich Low_complexity Low_complexity 2 44 0 342 237 26 26 chr3 118971265 118971379 -108553199 - MER104 DNA Tc2 -63 117 4 359 306 8 22 chr3 118971547 118971681 -108552897 - L2 LINE L2 -3 3310 3179 924 257 140 105 chr3 118972185 118972707 -108551871 - MER39 LTR ERV1 -2 705 1 1835 293 98 55 chr3 118973530 118974184 -108550394 + HAL1 LINE L1 5 629 -1878 1550 199 13 3 chr3 118974184 118974491 -108550087 + AluJb SINE Alu 2 311 -1 1835 293 98 55 chr3 118974491 118975170 -108549408 + HAL1 LINE L1 629 1427 -1080 186 43 0 0 chr3 118975170 118975193 -108549385 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1835 293 98 55 chr3 118975193 118975528 -108549050 + HAL1 LINE L1 1427 1746 -761 316 320 19 73 chr3 118975803 118976009 -108548569 - LTR67 LTR ERVL -359 198 4 895 263 66 74 chr3 118976022 118976642 -108547936 + HAL1 LINE L1 1770 2384 -123 232 320 124 6 chr3 118976813 118976991 -108547587 + L1ME LINE L1 5531 5729 -392 1518 120 0 38 chr3 118977153 118977498 -108547080 + L1PA7 LINE L1 5526 5892 -274 2449 60 0 0 chr3 118977498 118977799 -108546779 - AluY SINE Alu -10 301 1 1518 120 0 38 chr3 118977799 118978049 -108546529 + L1PA7 LINE L1 5892 6157 -9 22 0 0 0 chr3 118978049 118978071 -108546507 + AT_rich Low_complexity Low_complexity 1 22 0 242 228 0 0 chr3 118978119 118978176 -108546402 + A-rich Low_complexity Low_complexity 4 60 0 1226 278 26 28 chr3 118978263 118978731 -108545847 - MLT1H LTR MaLR -7 542 14 1146 266 72 55 chr3 118978772 118979359 -108545219 + L1MC5 LINE L1 5291 5887 -1921 640 246 80 86 chr3 118980007 118980381 -108544197 + L1MC5 LINE L1 6698 7069 -892 28 33 0 49 chr3 118980741 118980802 -108543776 + AT_rich Low_complexity Low_complexity 1 58 0 2590 137 18 9 chr3 118981009 118981454 -108543124 - L1PA16 LINE L1 0 6166 5718 3284 46 12 0 chr3 118981472 118981884 -108542694 - L1PA5 LINE L1 -1 6468 6052 3795 41 14 5 chr3 118981884 118982508 -108542070 + L1P2 LINE L1 5107 5737 -417 3279 166 13 25 chr3 118982506 118983571 -108541007 - L1PA5 LINE L1 -438 6043 4995 * 3210 135 0 8 chr3 118986450 118986933 -108537645 - L1PA5 LINE L1 -5971 490 12 6831 69 7 4 chr3 118986933 118988529 -108536049 + L1PA8 LINE L1 4587 6168 -4 1697 173 77 111 chr3 118989303 118989834 -108534744 + MLT2B1 LTR ERVL 1 513 -7 217 158 61 110 chr3 118990100 118990182 -108534396 - L2 LINE L2 0 3313 3236 1021 278 46 52 chr3 118991110 118991631 -108532947 - L2 LINE L2 -2 3311 2794 228 324 99 18 chr3 118991953 118992064 -108532514 - L2 LINE L2 -13 3300 3181 200 57 0 29 chr3 118992243 118992278 -108532300 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 190 284 95 32 chr3 118992608 118992703 -108531875 - MIR SINE MIR -77 185 85 217 259 0 0 chr3 118994443 118994497 -108530081 + T-rich Low_complexity Low_complexity 1 54 0 23 0 0 0 chr3 118995386 118995409 -108529169 + AT_rich Low_complexity Low_complexity 1 23 0 630 269 29 12 chr3 118995628 118995799 -108528779 + MLT1L LTR MaLR 98 271 -344 539 288 79 14 chr3 118995854 118996069 -108528509 + MLT1L LTR MaLR 356 584 -31 2412 127 36 14 chr3 118996320 118996739 -108527839 - MSTA LTR MaLR 0 428 1 423 352 15 20 chr3 118997115 118997311 -108527267 + HERVL LTR ERVL 3434 3628 -2026 671 185 8 0 chr3 118997316 118997435 -108527143 + FLAM_C SINE Alu 1 120 -23 417 39 0 0 chr3 118997435 118997486 -108527092 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 391 259 84 0 chr3 118997589 118997720 -108526858 - L1MB3 LINE L1 -293 5890 5749 8446 169 45 32 chr3 118997730 118999470 -108525108 - L1M4c LINE L1 -4608 1776 14 289 311 40 13 chr3 118999472 118999623 -108524955 + HERVL LTR ERVL 3790 3944 -1710 382 311 72 31 chr3 118999760 118999953 -108524625 + HERVL LTR ERVL 4701 4901 -753 7352 169 15 2 chr3 119000672 119001953 -108522625 + HSMAR2 DNA Mariner 1 1298 -4 223 274 0 0 chr3 119001976 119002038 -108522540 + (TA)n Simple_repeat Simple_repeat 1 62 0 348 282 30 119 chr3 119002187 119002389 -108522189 + MIR SINE MIR 46 229 -33 440 288 108 69 chr3 119002751 119003241 -108521337 - MLT1J LTR MaLR 0 511 3 2150 233 18 38 chr3 119003912 119004465 -108520113 + MER82 DNA MER2_type 111 652 -1 25 51 0 0 chr3 119005178 119005217 -108519361 + AT_rich Low_complexity Low_complexity 1 39 0 2667 251 40 30 chr3 119005341 119006356 -108518222 - L1ME1 LINE L1 -6 6229 5202 1121 216 80 6 chr3 119006361 119006712 -108517866 - L1ME1 LINE L1 -1142 5073 4697 464 261 79 36 chr3 119006734 119007494 -108517084 - L1ME1 LINE L1 -1949 4266 3352 1051 304 25 6 chr3 119007538 119007864 -108516714 + MER58B DNA MER1_type 1 332 -9 2077 282 85 35 chr3 119007875 119008605 -108515973 - L1ME1 LINE L1 -2906 3309 2617 1206 196 38 107 chr3 119008605 119008997 -108515581 + MLT1A1 LTR MaLR 1 365 0 2077 282 85 35 chr3 119008997 119009614 -108514964 - L1ME1 LINE L1 -3598 2617 2032 222 37 0 0 chr3 119009614 119009641 -108514937 + (TCTA)n Simple_repeat Simple_repeat 1 27 0 2077 282 85 35 chr3 119009641 119010306 -108514272 - L1ME1 LINE L1 -4183 2032 1252 * 3522 188 87 33 chr3 119010301 119011216 -108513362 - L1 LINE L1 -771 5375 4411 2881 210 35 35 chr3 119011217 119011923 -108512655 + L1MA10 LINE L1 5594 6299 -35 308 305 21 59 chr3 119011943 119012115 -108512463 + L1 LINE L1 3729 3895 -2251 2190 179 27 99 chr3 119012115 119012669 -108511909 + MLT2B2 LTR ERVL 2 515 0 308 305 21 59 chr3 119012669 119012683 -108511895 + L1 LINE L1 3895 3908 -2238 2877 70 0 0 chr3 119012762 119013131 -108511447 - L1PA6 LINE L1 -302 5852 5484 2233 84 12 16 chr3 119013131 119013447 -108511131 + L1PA6 LINE L1 5831 6151 -3 652 262 120 41 chr3 119013573 119014120 -108510458 + MLT1G1 LTR MaLR 10 593 -2 4042 80 17 31 chr3 119014317 119014700 -108509878 - L1PB1 LINE L1 -3 6148 5776 225 0 0 0 chr3 119014700 119014725 -108509853 + (TG)n Simple_repeat Simple_repeat 2 26 0 4042 80 17 31 chr3 119014725 119014945 -108509633 - L1PB1 LINE L1 -375 5776 5554 259 345 0 0 chr3 119014992 119015108 -108509470 + L1 LINE L1 4414 4529 -1617 1382 255 143 29 chr3 119015425 119015764 -108508814 - MLT1E LTR MaLR -16 577 157 2486 53 0 0 chr3 119015764 119016068 -108508510 + AluY SINE Alu 3 306 -5 1382 255 143 29 chr3 119016068 119016246 -108508332 - MLT1E LTR MaLR -436 157 1 302 245 36 66 chr3 119016534 119016730 -108507848 + L1 LINE L1 5209 5398 -748 3124 171 13 25 chr3 119019730 119020796 -108503782 + L1PA6 LINE L1 4680 5728 -438 1957 49 37 0 chr3 119020794 119021039 -108503539 - L1P2 LINE L1 -417 5737 5484 * 2135 93 16 16 chr3 119021039 119021354 -108503224 + L1PA6 LINE L1 5831 6151 -3 652 262 120 41 chr3 119021480 119022027 -108502551 + MLT1G1 LTR MaLR 10 593 -2 4042 80 17 31 chr3 119022224 119022607 -108501971 - L1PB1 LINE L1 -3 6148 5776 225 0 0 0 chr3 119022607 119022632 -108501946 + (TG)n Simple_repeat Simple_repeat 2 26 0 4042 80 17 31 chr3 119022632 119022852 -108501726 - L1PB1 LINE L1 -375 5776 5554 259 345 0 0 chr3 119022899 119023015 -108501563 + L1M1 LINE L1 4414 4529 -1617 1382 255 143 29 chr3 119023332 119023671 -108500907 - MLT1E LTR MaLR -16 577 157 2486 53 0 0 chr3 119023671 119023975 -108500603 + AluY SINE Alu 3 306 -5 1382 255 143 29 chr3 119023975 119024153 -108500425 - MLT1E LTR MaLR -436 157 1 291 224 49 63 chr3 119024441 119024730 -108499848 + L1M1 LINE L1 5209 5492 -659 2430 48 0 0 chr3 119024746 119025036 -108499542 + AluY SINE Alu 20 309 -2 225 346 149 0 chr3 119026207 119026314 -108498264 + L2 LINE L2 3191 3313 0 317 268 185 17 chr3 119026326 119026628 -108497950 + L1ME4a LINE L1 5724 6076 -45 21 36 0 0 chr3 119026649 119026677 -108497901 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 119026744 119026768 -108497810 + AT_rich Low_complexity Low_complexity 1 24 0 1772 124 62 0 chr3 119027090 119027364 -108497214 - AluSg SINE Alu -19 291 1 23 97 0 0 chr3 119027503 119027575 -108497003 + AT_rich Low_complexity Low_complexity 1 72 0 393 320 106 20 chr3 119027635 119027938 -108496640 - L1M4 LINE L1 -1446 4700 4372 * 629 307 81 55 chr3 119027910 119028513 -108496065 - L1M4 LINE L1 -2962 3184 2566 374 294 18 0 chr3 119028641 119028750 -108495828 + MER94 DNA DNA 11 121 -13 2098 77 7 18 chr3 119028973 119029246 -108495332 + AluSx SINE Alu 22 291 -21 244 286 41 10 chr3 119029653 119029751 -108494827 + L1ME4a LINE L1 5988 6088 -33 391 337 80 6 chr3 119029925 119030100 -108494478 + MIR SINE MIR 71 258 -4 217 167 0 24 chr3 119030129 119030171 -108494407 + (CAA)n Simple_repeat Simple_repeat 2 42 0 211 214 0 0 chr3 119030848 119030890 -108493688 + L2 LINE L2 3267 3308 -5 180 0 0 0 chr3 119031196 119031216 -108493362 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 845 288 101 17 chr3 119031500 119031907 -108492671 - MLT1J1 LTR MaLR -5 441 1 1205 283 90 56 chr3 119032093 119032662 -108491916 + MLT1E LTR MaLR 1 588 -5 200 210 32 16 chr3 119032782 119032844 -108491734 + (TA)n Simple_repeat Simple_repeat 2 64 0 193 245 0 61 chr3 119033115 119033164 -108491414 + L2 LINE L2 3191 3236 -36 437 279 93 29 chr3 119033455 119033627 -108490951 + MIR SINE MIR 20 202 -60 23 86 0 0 chr3 119033629 119033687 -108490891 + AT_rich Low_complexity Low_complexity 1 58 0 577 178 161 0 chr3 119033777 119033895 -108490683 + FLAM_A SINE Alu 6 142 0 399 275 37 19 chr3 119033898 119034087 -108490491 - MIR SINE MIR 0 262 18 2061 157 156 138 chr3 119034159 119034582 -108489996 - L1MC3 LINE L1 -159 7626 7093 261 352 0 0 chr3 119034582 119034673 -108489905 - MLT1F1 LTR MaLR -442 125 35 2061 157 156 138 chr3 119034673 119034955 -108489623 - L1MC3 LINE L1 -692 7093 6817 207 280 130 30 chr3 119035380 119035480 -108489098 - MIR3 SINE MIR -6 202 93 192 306 0 0 chr3 119037261 119037310 -108487268 + MER5A DNA MER1_type 62 110 -79 205 282 0 26 chr3 119039911 119039989 -108484589 + (CATTT)n Simple_repeat Simple_repeat 3 78 0 368 236 147 70 chr3 119040890 119041004 -108483574 - MER5A DNA MER1_type -3 186 55 1367 235 48 14 chr3 119041004 119041357 -108483221 + MLT1A1 LTR MaLR 1 365 0 368 236 147 70 chr3 119041357 119041399 -108483179 - MER5A DNA MER1_type -134 55 18 2538 144 11 39 chr3 119041472 119041929 -108482649 - MER65A LTR ERV1 -1 444 1 2078 91 3 23 chr3 119042344 119042653 -108481925 - L1PA7 LINE L1 0 6154 5852 913 152 60 113 chr3 119044275 119044558 -108480020 + L1MD3 LINE L1 7728 7995 0 1238 138 20 0 chr3 119044752 119044955 -108479623 + Tigger2 DNA MER2_type 4 210 -2508 813 175 13 32 chr3 119044957 119045111 -108479467 + Tigger2 DNA MER2_type 2567 2717 -1 182 254 56 28 chr3 119045112 119045183 -108479395 + MIR SINE MIR 156 228 -34 22 0 0 0 chr3 119045874 119045896 -108478682 + AT_rich Low_complexity Low_complexity 1 22 0 333 189 67 44 chr3 119046060 119046150 -108478428 + MLT1K LTR MaLR 497 588 0 593 217 74 37 chr3 119046777 119046966 -108477612 - MER58B DNA MER1_type -1 340 145 22 35 0 0 chr3 119049448 119049477 -108475101 + AT_rich Low_complexity Low_complexity 1 29 0 204 350 0 0 chr3 119050451 119050511 -108474067 + MIR SINE MIR 34 93 -115 335 258 58 8 chr3 119050609 119050729 -108473849 - MIR SINE MIR -71 191 66 297 0 0 0 chr3 119050921 119050954 -108473624 + (CA)n Simple_repeat Simple_repeat 2 34 0 1847 199 20 9 chr3 119051349 119051691 -108472887 + MLT1A1 LTR MaLR 8 353 -12 649 92 0 20 chr3 119051692 119051790 -108472788 + L1PA11 LINE L1 6066 6161 -13 216 0 0 0 chr3 119051796 119051820 -108472758 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2156 180 40 42 chr3 119052044 119052078 -108472500 - MSTB2 LTR MaLR -2 455 422 2002 176 87 8 chr3 119052078 119052471 -108472107 + MSTA LTR MaLR 1 424 -4 2156 180 40 42 chr3 119052471 119052892 -108471686 - MSTB2 LTR MaLR -35 422 1 279 277 113 7 chr3 119052957 119053098 -108471480 + HAL1b LINE L1 219 374 -974 230 335 13 19 chr3 119053207 119053362 -108471216 + L1MCc LINE L1 242 395 -6028 1520 286 66 39 chr3 119053606 119054019 -108470559 + L1MCc LINE L1 816 1255 -5168 2294 113 0 0 chr3 119054019 119054330 -108470248 + AluY SINE Alu 1 311 0 1520 286 66 39 chr3 119054330 119054583 -108469995 + L1MCc LINE L1 1255 1500 -4923 303 118 66 66 chr3 119054605 119054681 -108469897 + HAL1b LINE L1 365 440 -908 1425 170 0 4 chr3 119054778 119055013 -108469565 - AluJb SINE Alu -20 292 59 268 333 0 20 chr3 119055244 119055343 -108469235 - L2 LINE L2 -16 3297 3201 833 269 91 28 chr3 119055344 119055772 -108468806 + HAL1b LINE L1 707 1161 -187 314 276 39 0 chr3 119055788 119055915 -108468663 + HAL1b LINE L1 1210 1341 -7 23 0 0 0 chr3 119058014 119058037 -108466541 + AT_rich Low_complexity Low_complexity 1 23 0 222 303 0 37 chr3 119058418 119058527 -108466051 + A-rich Low_complexity Low_complexity 5 109 0 841 156 81 66 chr3 119058954 119059165 -108465413 - MER20 DNA MER1_type -5 214 1 207 182 0 0 chr3 119060002 119060046 -108464532 + (TTTG)n Simple_repeat Simple_repeat 3 46 0 309 339 39 58 chr3 119060399 119060656 -108463922 - L1MC4a LINE L1 -1917 5891 5640 1245 207 3 24 chr3 119060768 119061058 -108463520 + L1MB7 LINE L1 5894 6177 -7 249 109 0 0 chr3 119061617 119061663 -108462915 + (TA)n Simple_repeat Simple_repeat 1 46 0 337 151 79 8 chr3 119062454 119062580 -108461998 + (TA)n Simple_repeat Simple_repeat 1 135 0 223 203 27 0 chr3 119063270 119063344 -108461234 + (TA)n Simple_repeat Simple_repeat 2 77 0 2198 194 37 131 chr3 119063783 119064549 -108460029 + LTR8A LTR ERV1 34 727 0 180 200 0 0 chr3 119065008 119065048 -108459530 + (TA)n Simple_repeat Simple_repeat 1 40 0 233 191 206 0 chr3 119065135 119065198 -108459380 - MIR SINE MIR -109 153 78 370 169 0 0 chr3 119065207 119065278 -108459300 + L1MA8 LINE L1 6210 6280 -11 21 36 0 0 chr3 119065356 119065384 -108459194 + AT_rich Low_complexity Low_complexity 1 28 0 2945 40 0 0 chr3 119066432 119066784 -108457794 - L1PA5 LINE L1 -379 5775 5424 3079 44 10 0 chr3 119066784 119067163 -108457415 + L1PA5 LINE L1 5766 6152 -2 252 0 0 0 chr3 119067805 119067833 -108456745 + (A)n Simple_repeat Simple_repeat 1 28 0 341 182 30 0 chr3 119069186 119069252 -108455326 + MLT1K LTR MaLR 521 588 0 412 104 30 0 chr3 119070607 119070704 -108453874 + L1PA16 LINE L1 6080 6178 0 1710 187 13 0 chr3 119070843 119071148 -108453430 + AluSx SINE Alu 1 309 -3 499 267 5 73 chr3 119071198 119071389 -108453189 - MER5B DNA MER1_type 0 178 1 185 235 0 0 chr3 119071921 119071955 -108452623 + L2 LINE L2 3271 3304 -9 408 40 0 0 chr3 119072533 119072583 -108451995 + (TG)n Simple_repeat Simple_repeat 2 51 0 2027 143 30 24 chr3 119072590 119072961 -108451617 + THE1C LTR MaLR 1 373 -2 1282 206 17 90 chr3 119073416 119073770 -108450808 + MLT2B3 LTR ERVL 1 328 -226 2059 233 72 24 chr3 119073777 119074690 -108449888 - L1MC/D LINE L1 -786 5754 4895 1278 268 21 9 chr3 119074695 119075024 -108449554 + MLT1E2 LTR MaLR 294 626 0 841 275 103 34 chr3 119075027 119075465 -108449113 + MLT1E LTR MaLR 56 593 0 422 262 82 6 chr3 119075466 119075499 -108449079 - L1MC/D LINE L1 -4127 2413 2384 192 40 0 0 chr3 119075499 119075524 -108449054 + (TG)n Simple_repeat Simple_repeat 2 26 0 422 262 82 6 chr3 119075524 119075673 -108448905 - L1MC/D LINE L1 -4156 2384 2217 414 234 0 89 chr3 119075682 119075806 -108448772 + MLT1E2 LTR MaLR 2 114 -391 980 203 0 40 chr3 119075807 119076009 -108448569 + MLT1A1 LTR MaLR 1 194 -171 767 191 7 0 chr3 119076138 119076274 -108448304 + MLT1A1 LTR MaLR 229 365 0 1574 283 75 13 chr3 119076286 119076752 -108447826 + MLT1E2 LTR MaLR 129 623 -3 644 221 54 7 chr3 119076929 119077078 -108447500 + MLT1D LTR MaLR 347 502 -3 186 103 0 0 chr3 119077098 119077127 -108447451 + (TG)n Simple_repeat Simple_repeat 2 30 0 909 292 75 35 chr3 119077180 119078411 -108446167 - L1ME LINE L1 -4360 2180 810 298 288 38 44 chr3 119078842 119079002 -108445576 - L1ME LINE L1 -6190 350 192 569 230 0 16 chr3 119079005 119079131 -108445447 + AluJb SINE Alu 9 132 -180 481 337 0 22 chr3 119079132 119079316 -108445262 - L1ME LINE L1 -6336 204 25 511 250 29 0 chr3 119079537 119079673 -108444905 + MER103 DNA DNA 19 158 -8 823 246 144 25 chr3 119080659 119081009 -108443569 - MLT1G3 LTR MaLR 0 542 153 193 116 23 23 chr3 119081010 119081053 -108443525 + GA-rich Low_complexity Low_complexity 2 44 0 233 295 53 11 chr3 119081056 119081151 -108443427 - MLT1G1 LTR MaLR -355 212 114 241 295 26 26 chr3 119081182 119081260 -108443318 - MLT1G1 LTR MaLR -472 123 46 386 103 0 17 chr3 119081260 119081318 -108443260 + L1PA4 LINE L1 6030 6086 -69 1805 193 21 34 chr3 119081499 119081549 -108443029 - MLT2C2 LTR ERVL -8 456 407 621 92 25 0 chr3 119081549 119081669 -108442909 + (TAGA)n Simple_repeat Simple_repeat 3 125 0 1805 193 21 34 chr3 119081669 119082149 -108442429 - MLT2C2 LTR ERVL -57 407 1 4970 188 33 18 chr3 119082153 119082282 -108442296 - ERVL-C2 LTR ERVL -12 5752 5626 1748 152 10 17 chr3 119082282 119082578 -108442000 + AluJo SINE Alu 1 294 -18 4970 188 33 18 chr3 119082578 119083429 -108441149 - ERVL-C2 LTR ERVL -138 5626 4758 196 325 13 93 chr3 119083429 119083580 -108440998 - MIR SINE MIR -86 176 38 671 264 79 31 chr3 119083710 119083937 -108440641 + LTR33 LTR ERVL 12 249 -272 280 314 110 0 chr3 119084012 119084130 -108440448 + ERVL LTR ERVL 4527 4657 -1107 335 155 0 0 chr3 119084195 119084253 -108440325 + L1PB4 LINE L1 5643 5700 -456 1651 180 10 3 chr3 119084253 119084680 -108439898 - AluJo SINE Alu 0 434 6 438 183 0 0 chr3 119084687 119084769 -108439809 + L1PB4 LINE L1 5712 5793 -510 233 279 47 0 chr3 119084762 119084848 -108439730 + L1MC4 LINE L1 6614 6703 -1339 * 189 214 0 0 chr3 119084848 119084890 -108439688 + (TA)n Simple_repeat Simple_repeat 2 43 0 1811 200 3 16 chr3 119084893 119085273 -108439305 + L1PB4 LINE L1 5777 6151 -5 688 308 39 22 chr3 119085398 119085710 -108438868 + ERVL LTR ERVL 4787 5103 -661 815 266 133 0 chr3 119086227 119086453 -108438125 + LTR33 LTR ERVL 243 498 -23 26 30 0 0 chr3 119087318 119087351 -108437227 + AT_rich Low_complexity Low_complexity 1 33 0 21 0 0 0 chr3 119088196 119088217 -108436361 + AT_rich Low_complexity Low_complexity 1 21 0 348 24 0 0 chr3 119088987 119089028 -108435550 + (TC)n Simple_repeat Simple_repeat 2 42 0 242 224 0 0 chr3 119089171 119089220 -108435358 - MIR SINE MIR -141 121 73 206 275 0 0 chr3 119089702 119089742 -108434836 - L2 LINE L2 -25 3247 3208 553 322 58 0 chr3 119090263 119090434 -108434144 - MER5A DNA MER1_type 0 189 9 434 229 9 48 chr3 119090445 119090550 -108434028 + MER5A DNA MER1_type 1 101 -88 1177 288 67 30 chr3 119090692 119091179 -108433399 + MLT1H LTR MaLR 1 547 -2 296 208 20 10 chr3 119092451 119092552 -108432026 + L1MC4a LINE L1 5328 5429 -2379 605 310 71 18 chr3 119092758 119093097 -108431481 + L1MC4a LINE L1 5560 5916 -1892 22 35 0 0 chr3 119093247 119093276 -108431302 + AT_rich Low_complexity Low_complexity 1 29 0 186 43 0 0 chr3 119093908 119093931 -108430647 + (TA)n Simple_repeat Simple_repeat 1 23 0 3610 104 37 6 chr3 119093933 119094480 -108430098 - L1PA10 LINE L1 0 6168 5605 2740 152 15 2 chr3 119094480 119094940 -108429638 + L1P LINE L1 4588 5053 -1093 26 30 0 0 chr3 119095771 119095804 -108428774 + AT_rich Low_complexity Low_complexity 1 33 0 244 321 21 15 chr3 119096329 119096589 -108427989 - L1MEd LINE L1 -1409 1081 913 23 33 0 0 chr3 119096946 119096976 -108427602 + AT_rich Low_complexity Low_complexity 1 30 0 262 335 80 38 chr3 119097193 119097432 -108427146 + L2 LINE L2 2505 2753 -561 227 169 68 51 chr3 119098235 119098294 -108426284 + L2 LINE L2 3251 3310 -3 1267 283 75 106 chr3 119098554 119099506 -108425072 + L1MCc LINE L1 30 953 -5470 3183 109 11 0 chr3 119099506 119099965 -108424613 + L1PA12 LINE L1 5705 6168 0 1267 283 75 106 chr3 119099965 119099993 -108424585 + L1MCc LINE L1 953 980 -5443 505 284 49 66 chr3 119099988 119100358 -108424220 + L1MCc LINE L1 1239 1606 -4887 * 15389 53 65 3 chr3 119100355 119102384 -108422194 + L1P LINE L1 3 2157 -3989 16021 92 10 56 chr3 119102501 119103884 -108420694 - L1P LINE L1 -856 5290 3974 833 84 0 0 chr3 119103884 119103991 -108420587 - AluY SINE Alu -14 297 191 16021 92 10 56 chr3 119103991 119105132 -108419446 - L1P LINE L1 -2172 3974 2782 9476 100 7 1 chr3 119105132 119106498 -108418080 + L1P LINE L1 1395 2768 -3378 1346 202 22 41 chr3 119106497 119106859 -108417719 - L1 LINE L1 -768 5614 5260 * 1592 267 51 37 chr3 119106857 119107996 -108416582 - L1 LINE L1 -3548 2834 1611 1672 174 7 33 chr3 119107996 119108301 -108416277 - AluJo SINE Alu -15 297 1 1592 267 51 37 chr3 119108301 119108645 -108415933 - L1 LINE L1 -4771 1611 1273 5790 273 21 21 chr3 119108745 119110421 -108414157 - L1M3de LINE L1 -4645 2008 572 278 182 0 18 chr3 119110539 119110594 -108413984 + MLT2B3 LTR ERVL 18 71 -483 1493 209 33 87 chr3 119110678 119111267 -108413311 + MLT2B3 LTR ERVL 70 516 -4 971 306 64 29 chr3 119111271 119112036 -108412542 - L1MEc LINE L1 -4530 1866 1075 9317 37 3 2 chr3 119112069 119113953 -108410625 - L1PA3 LINE L1 -4 6151 4239 2184 106 0 3 chr3 119115620 119115912 -108408666 - AluSg SINE Alu -19 291 1 2197 129 0 3 chr3 119115914 119116225 -108408353 - AluSx SINE Alu -2 310 1 9744 70 1 5 chr3 119116407 119117721 -108406857 - L1P LINE L1 -1640 4506 3197 2421 101 6 8 chr3 119118910 119119265 -108405313 + THE1A LTR MaLR 2 355 0 2594 128 8 5 chr3 119119265 119119663 -108404915 + THE1A-int LTR MaLR 1 399 -1181 307 193 0 113 chr3 119119720 119119870 -108404708 + AluJb SINE Alu 3 135 -167 231 108 0 0 chr3 119120287 119120324 -108404254 - AluJo SINE Alu -4 298 262 1403 153 22 41 chr3 119120916 119121230 -108403348 - L1MC3 LINE L1 -72 7713 7406 1705 234 26 0 chr3 119122010 119122425 -108402153 + L1MC3 LINE L1 7343 7768 -17 906 270 89 3 chr3 119122420 119122715 -108401863 + L1ME1 LINE L1 4631 4958 -1188 * 180 0 0 0 chr3 119122715 119122735 -108401843 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 906 270 89 3 chr3 119122735 119122765 -108401813 + L1ME1 LINE L1 4958 4984 -1162 3971 214 49 32 chr3 119123778 119124817 -108399761 + L1PBa LINE L1 561 1617 -5246 469 209 0 0 chr3 119124917 119125008 -108399570 - FLAM_A SINE Alu -48 94 4 726 154 138 5 chr3 119125011 119125199 -108399379 + L2 LINE L2 1958 2170 -1144 1077 156 78 39 chr3 119125200 119125405 -108399173 - MER20 DNA MER1_type -1 218 6 1798 230 128 13 chr3 119125453 119125923 -108398655 + L2 LINE L2 2177 2700 -614 1523 185 4 0 chr3 119126062 119126321 -108398257 - AluJo SINE Alu -52 260 1 2363 195 58 16 chr3 119127382 119127936 -108396642 + L1MA9 LINE L1 5697 6273 -39 1313 236 45 27 chr3 119127944 119128545 -108396033 + L1ME1 LINE L1 5255 6064 -102 1556 187 30 60 chr3 119128545 119128947 -108395631 - MLT1B LTR MaLR 0 390 1 1313 236 45 27 chr3 119128947 119129046 -108395532 + L1ME1 LINE L1 6064 6160 -6 26 30 0 0 chr3 119129262 119129295 -108395283 + AT_rich Low_complexity Low_complexity 1 33 0 532 235 170 0 chr3 119130837 119130990 -108393588 - MER5A DNA MER1_type -1 188 10 1904 175 31 11 chr3 119131353 119131735 -108392843 - MLT1B LTR MaLR 0 390 1 23 33 0 0 chr3 119131753 119131783 -108392795 + AT_rich Low_complexity Low_complexity 1 30 0 4480 210 80 34 chr3 119132052 119133366 -108391212 + Charlie1a DNA MER1_type 81 1455 0 189 154 0 0 chr3 119133830 119133869 -108390709 + (CAT)n Simple_repeat Simple_repeat 3 41 0 591 284 54 29 chr3 119133895 119134134 -108390444 - MIR SINE MIR -1 261 17 207 0 0 0 chr3 119134386 119134409 -108390169 + (T)n Simple_repeat Simple_repeat 1 23 0 29 0 0 0 chr3 119136124 119136153 -108388425 + AT_rich Low_complexity Low_complexity 1 29 0 302 333 36 29 chr3 119137860 119137998 -108386580 + MIR SINE MIR 2 141 -67 2209 125 105 10 chr3 119138176 119138567 -108386011 - MSTA LTR MaLR 0 428 1 2118 122 0 6 chr3 119138637 119138949 -108385629 + AluSg SINE Alu 1 310 0 21 0 0 0 chr3 119140107 119140128 -108384450 + AT_rich Low_complexity Low_complexity 1 21 0 1042 81 7 0 chr3 119140231 119140367 -108384211 - AluSg/x SINE Alu -17 295 159 12141 131 19 13 chr3 119140367 119142327 -108382251 + Tigger1 DNA MER2_type 447 2418 0 314 293 172 6 chr3 119142849 119143023 -108381555 + MIR SINE MIR 59 261 -1 2197 129 0 3 chr3 119143269 119143580 -108380998 + AluSx SINE Alu 1 310 -2 2184 106 0 3 chr3 119143582 119143874 -108380704 + AluSg SINE Alu 1 291 -19 45 19 0 0 chr3 119144185 119144237 -108380341 + AT_rich Low_complexity Low_complexity 1 52 0 2297 150 27 7 chr3 119144650 119145096 -108379482 - L1 LINE L1 -1426 4720 4266 * 2489 218 48 40 chr3 119145086 119145240 -108379338 - L1 LINE L1 -2659 3487 3336 2103 131 7 0 chr3 119145240 119145537 -108379041 + AluSx SINE Alu 6 304 -8 2489 218 48 40 chr3 119145537 119146223 -108378355 - L1 LINE L1 -2810 3336 2641 * 5157 191 30 12 chr3 119146222 119147772 -108376806 + L1MA6 LINE L1 4724 6297 -3 201 323 52 0 chr3 119148088 119148184 -108376394 + GA-rich Low_complexity Low_complexity 4 104 0 * 243 167 25 25 chr3 119148112 119148236 -108376342 + GA-rich Low_complexity Low_complexity 1 124 0 220 207 23 46 chr3 119150373 119150460 -108374118 + (TTATA)n Simple_repeat Simple_repeat 3 87 0 1319 255 11 30 chr3 119151883 119152255 -108372323 + MLT1A1 LTR MaLR 1 365 0 430 271 62 0 chr3 119152669 119152798 -108371780 + MIR SINE MIR 64 200 -62 257 260 14 14 chr3 119152834 119152907 -108371671 + (CATATA)n Simple_repeat Simple_repeat 3 75 0 416 308 32 13 chr3 119153162 119153318 -108371260 - MIR SINE MIR -21 241 83 536 105 0 12 chr3 119153345 119153431 -108371147 + (TA)n Simple_repeat Simple_repeat 2 86 0 224 59 29 0 chr3 119153454 119153488 -108371090 + (TA)n Simple_repeat Simple_repeat 1 35 0 211 163 70 0 chr3 119153620 119153663 -108370915 + L2 LINE L2 3268 3313 0 529 190 11 121 chr3 119153824 119153998 -108370580 + MER96B DNA MER1_type? 3 157 -260 537 279 82 6 chr3 119156019 119156202 -108368376 + MIR SINE MIR 64 260 -2 494 250 12 3 chr3 119157278 119157449 -108367129 + MLT1I LTR MaLR 1 220 -189 2360 38 41 3 chr3 119157511 119157803 -108366775 - AluY SINE Alu -8 303 1 264 217 0 17 chr3 119157811 119157871 -108366707 + MER69 DNA AcHobo 2464 2522 -4 375 294 49 42 chr3 119158465 119158608 -108365970 + MIR SINE MIR 49 192 -70 2215 209 35 49 chr3 119158726 119158770 -108365808 + MLT1F LTR MaLR 1 44 -498 1177 201 88 49 chr3 119158770 119159054 -108365524 - AluJo SINE Alu -5 297 3 2215 209 35 49 chr3 119159054 119159559 -108365019 + MLT1F LTR MaLR 44 542 0 1557 149 41 2 chr3 119160160 119160459 -108364119 - MSTA LTR MaLR 0 428 54 1171 216 47 14 chr3 119161491 119161787 -108362791 + MARNA DNA Mariner 111 416 -170 607 275 118 18 chr3 119162259 119162488 -108362090 - MIR SINE MIR -9 253 2 1380 207 43 37 chr3 119162527 119162875 -108361703 - MLT1A1 LTR MaLR -11 354 5 333 240 142 31 chr3 119163496 119163721 -108360857 - L1ME3A LINE L1 -220 5946 5697 345 332 39 20 chr3 119163838 119164108 -108360470 + MLT1J2 LTR MaLR 69 379 -132 630 260 103 35 chr3 119164166 119164673 -108359905 - L1ME3A LINE L1 -613 5549 5005 1363 334 38 33 chr3 119164884 119165249 -108359329 + L3 LINE CR1 799 1170 -407 351 0 0 0 chr3 119165249 119165288 -108359290 + (TG)n Simple_repeat Simple_repeat 2 40 0 1363 334 38 33 chr3 119165288 119165613 -108358965 + L3 LINE CR1 1170 1492 -85 471 315 31 0 chr3 119165618 119165780 -108358798 - MIR SINE MIR -2 260 94 190 322 161 11 chr3 119165846 119165933 -108358645 + L3 LINE CR1 1476 1575 -2 414 244 23 143 chr3 119166447 119166705 -108357873 - L2 LINE L2 -5 3308 3082 208 257 29 14 chr3 119166859 119166929 -108357649 + MIR SINE MIR 87 145 -63 345 47 0 0 chr3 119167084 119167091 -108357487 + (TG)n Simple_repeat Simple_repeat 1 50 0 345 47 0 0 chr3 119167091 119167134 -108357444 + (TG)n Simple_repeat Simple_repeat 2 44 0 286 204 0 0 chr3 119169919 119169968 -108354610 - L2 LINE L2 -3 3310 3262 660 317 9 9 chr3 119170083 119170304 -108354274 - MIR SINE MIR -10 252 32 489 318 67 64 chr3 119170325 119170984 -108353594 - L2 LINE L2 -107 3165 2504 277 325 102 32 chr3 119171163 119171320 -108353258 - MIR SINE MIR -42 220 53 367 308 23 15 chr3 119171762 119171892 -108352686 - MIR SINE MIR -131 131 1 780 197 104 47 chr3 119171935 119172128 -108352450 + MER63A DNA MER1_type 7 210 0 24 0 0 0 chr3 119172592 119172616 -108351962 + AT_rich Low_complexity Low_complexity 1 24 0 257 333 35 11 chr3 119173133 119173220 -108351358 + MLT1K LTR MaLR 132 220 -368 2169 115 3 0 chr3 119173508 119173804 -108350774 - AluSq SINE Alu -16 297 1 324 48 0 0 chr3 119174733 119174775 -108349803 + (TG)n Simple_repeat Simple_repeat 1 42 0 1073 193 74 70 chr3 119174775 119175045 -108349533 - AluJb SINE Alu -33 279 9 21 0 0 0 chr3 119175454 119175475 -108349103 + AT_rich Low_complexity Low_complexity 1 21 0 192 289 12 60 chr3 119175870 119175953 -108348625 + MIR3 SINE MIR 79 157 -51 841 288 164 16 chr3 119176122 119176501 -108348077 - L2 LINE L2 -27 3286 2852 709 278 34 34 chr3 119179143 119179377 -108345201 + MIR SINE MIR 8 241 -21 264 247 14 14 chr3 119179632 119179705 -108344873 + (TATATG)n Simple_repeat Simple_repeat 3 75 0 595 258 113 16 chr3 119179735 119179921 -108344657 - MIR SINE MIR -56 206 3 276 53 0 0 chr3 119180369 119180407 -108344171 + (TG)n Simple_repeat Simple_repeat 2 39 0 236 250 18 0 chr3 119181692 119181748 -108342830 + G-rich Low_complexity Low_complexity 3 59 0 252 236 28 0 chr3 119181795 119181867 -108342711 + (CCG)n Simple_repeat Simple_repeat 2 75 0 303 49 0 0 chr3 119183095 119183136 -108341442 + (GA)n Simple_repeat Simple_repeat 2 42 0 183 80 0 0 chr3 119183606 119183631 -108340947 + (CTG)n Simple_repeat Simple_repeat 1 25 0 395 277 27 36 chr3 119185286 119185398 -108339180 + MIR3 SINE MIR 91 201 -7 193 343 39 0 chr3 119186093 119186195 -108338383 + MIR SINE MIR 34 139 -123 186 133 0 0 chr3 119186385 119186415 -108338163 + (T)n Simple_repeat Simple_repeat 1 30 0 887 125 0 0 chr3 119189145 119189265 -108335313 + AluSq/x SINE Alu 1 120 -192 2243 104 0 3 chr3 119189381 119189689 -108334889 - AluSq SINE Alu -6 307 1 414 233 0 39 chr3 119190064 119190167 -108334411 - MER94 DNA DNA 0 134 36 224 77 26 0 chr3 119190969 119191008 -108333570 + (GA)n Simple_repeat Simple_repeat 1 40 0 294 335 98 49 chr3 119191361 119191686 -108332892 - L2 LINE L2 -9 3304 2964 652 253 66 69 chr3 119191926 119192289 -108332289 - L1MC4a LINE L1 -1873 5935 5574 257 313 82 22 chr3 119193958 119194092 -108330486 + MIR SINE MIR 120 261 -1 224 283 179 9 chr3 119195283 119195389 -108329189 + MIR3 SINE MIR 77 200 -8 764 267 47 35 chr3 119195820 119196078 -108328500 + MIR SINE MIR 2 262 0 181 30 91 0 chr3 119196772 119196805 -108327773 + T-rich Low_complexity Low_complexity 2 37 0 7506 35 0 0 chr3 119196810 119197729 -108326849 - L1PA3 LINE L1 0 6155 5237 380 355 114 33 chr3 119197945 119198244 -108326334 + L2 LINE L2 2950 3272 0 24 53 0 0 chr3 119198636 119198674 -108325904 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr3 119199653 119199679 -108324899 + AT_rich Low_complexity Low_complexity 1 26 0 237 33 0 0 chr3 119202106 119202136 -108322442 + (CA)n Simple_repeat Simple_repeat 1 30 0 200 314 126 51 chr3 119202590 119202765 -108321813 + MIR3 SINE MIR 8 195 -13 338 329 43 0 chr3 119203822 119203983 -108320595 + MIR SINE MIR 92 259 -3 252 0 0 0 chr3 119204243 119204271 -108320307 + (T)n Simple_repeat Simple_repeat 1 28 0 603 294 29 53 chr3 119204444 119204900 -108319678 - L1PA10 LINE L1 0 6168 5724 507 208 10 0 chr3 119205005 119205106 -108319472 - L1P LINE L1 -3808 2338 2237 * 2327 167 24 0 chr3 119205105 119205531 -108319047 + L1P LINE L1 3818 4253 -1893 2230 46 7 7 chr3 119205531 119205803 -108318775 + L1PA5 LINE L1 5864 6148 -6 182 61 0 30 chr3 119205875 119205908 -108318670 + (TAAAA)n Simple_repeat Simple_repeat 4 35 0 2814 170 23 4 chr3 119205908 119206421 -108318157 + L1P LINE L1 4239 4761 -1385 2121 162 28 9 chr3 119206706 119207132 -108317446 - L1 LINE L1 -1426 4720 4287 479 245 14 20 chr3 119207141 119207288 -108317290 - L1 LINE L1 -2657 3489 3344 1256 183 9 0 chr3 119207305 119207534 -108317044 + AluSx SINE Alu 14 244 -68 1184 217 49 4 chr3 119208580 119208871 -108315707 + MSTA LTR MaLR 134 428 0 3578 204 21 5 chr3 119209065 119210176 -108314402 + L1M2 LINE L1 4553 5677 -623 261 333 0 0 chr3 119211029 119211119 -108313459 + (CAG)n Simple_repeat Simple_repeat 2 91 0 343 286 76 17 chr3 119211157 119211276 -108313302 - MIR SINE MIR -5 257 132 771 188 81 91 chr3 119213642 119213962 -108310616 + Charlie1 DNA MER1_type 2445 2761 0 189 154 0 0 chr3 119214426 119214465 -108310113 + (CAT)n Simple_repeat Simple_repeat 3 41 0 590 284 54 29 chr3 119214491 119214730 -108309848 - MIR SINE MIR -1 261 17 198 0 0 0 chr3 119214982 119215004 -108309574 + (T)n Simple_repeat Simple_repeat 1 22 0 194 341 49 6 chr3 119216428 119216592 -108307986 + MIR SINE MIR 92 262 0 234 0 0 0 chr3 119216852 119216878 -108307700 + (T)n Simple_repeat Simple_repeat 1 26 0 15244 130 14 5 chr3 119217062 119220410 -108304168 - L1PA10 LINE L1 -5 6163 2799 22 35 0 0 chr3 119221389 119221418 -108303160 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 119223602 119223624 -108300954 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 119224928 119224950 -108299628 + AT_rich Low_complexity Low_complexity 1 22 0 393 265 94 43 chr3 119225377 119225494 -108299084 - L2 LINE L2 -4 3309 3187 967 204 5 0 chr3 119225497 119225683 -108298895 - MER5A DNA MER1_type -2 187 1 283 296 0 0 chr3 119226377 119226465 -108298113 + T-rich Low_complexity Low_complexity 3 90 0 22 0 0 0 chr3 119227898 119227920 -108296658 + AT_rich Low_complexity Low_complexity 1 22 0 396 334 71 11 chr3 119228259 119228462 -108296116 + MIR SINE MIR 34 247 -15 341 347 16 33 chr3 119228982 119229103 -108295475 - L2 LINE L2 0 3272 3154 488 263 40 29 chr3 119229286 119229461 -108295117 - MER5B DNA MER1_type -1 177 1 1087 163 15 0 chr3 119229731 119229927 -108294651 + L1PB1 LINE L1 2 200 -6663 14120 188 36 15 chr3 119229929 119230418 -108294160 + L1PB1 LINE L1 636 1113 -5754 2214 123 0 0 chr3 119230418 119230726 -108293852 - AluSq SINE Alu -5 308 1 14120 188 36 15 chr3 119230726 119232475 -108292103 + L1PB1 LINE L1 1113 2823 -4044 2318 110 3 0 chr3 119232475 119232784 -108291794 + AluSp SINE Alu 1 310 -3 14120 188 36 15 chr3 119232784 119233351 -108291227 + L1PB1 LINE L1 2823 3376 -3491 4688 74 46 6 chr3 119233351 119233986 -108290592 - PABL_A LTR ERV1 0 660 1 14120 188 36 15 chr3 119233986 119234725 -108289853 + L1PB1 LINE L1 3376 4098 -2769 197 83 28 0 chr3 119234725 119234761 -108289817 + (CAA)n Simple_repeat Simple_repeat 2 38 0 14120 188 36 15 chr3 119234761 119237193 -108287385 + L1PB1 LINE L1 4098 6867 0 1355 195 4 4 chr3 119237297 119237564 -108287014 - L1MC1 LINE L1 0 6333 6067 279 234 0 0 chr3 119238863 119238940 -108285638 + (TAG)n Simple_repeat Simple_repeat 2 78 0 402 252 76 17 chr3 119238979 119239098 -108285480 - MIR SINE MIR -5 257 132 222 360 85 54 chr3 119239388 119239646 -108284932 + L3b LINE CR1 1309 1574 -9 518 251 25 68 chr3 119240538 119240748 -108283830 + MIR SINE MIR 40 245 -17 325 302 87 17 chr3 119240974 119241146 -108283432 + MIR SINE MIR 24 207 -55 219 331 68 75 chr3 119241411 119241544 -108283034 - L2 LINE L2 -5 3267 3136 1492 181 6 56 chr3 119241596 119241917 -108282661 + AluJb SINE Alu 1 305 -7 320 362 35 43 chr3 119242172 119242426 -108282152 - L2 LINE L2 -445 2869 2618 484 293 5 74 chr3 119243817 119244032 -108280546 + MIR SINE MIR 63 262 0 558 342 50 54 chr3 119244071 119244665 -108279913 + L2 LINE L2 2381 2972 -342 27 49 0 0 chr3 119244906 119244947 -108279631 + AT_rich Low_complexity Low_complexity 1 41 0 442 291 29 40 chr3 119245005 119245180 -108279398 + MIR SINE MIR 47 219 -43 247 88 0 123 chr3 119247367 119247424 -108277154 - L2 LINE L2 0 3313 3264 206 225 0 0 chr3 119247691 119247731 -108276847 + CT-rich Low_complexity Low_complexity 2 41 0 232 384 67 18 chr3 119248110 119248274 -108276304 - L2 LINE L2 -1 3271 3100 268 316 46 53 chr3 119248558 119248710 -108275868 - MIR SINE MIR -38 224 74 2747 165 6 2 chr3 119249323 119249813 -108274765 - L1PB3 LINE L1 0 6154 5663 23 33 0 0 chr3 119250638 119250668 -108273910 + AT_rich Low_complexity Low_complexity 1 30 0 266 314 105 16 chr3 119251571 119251695 -108272883 + MIR SINE MIR 91 225 -37 316 136 91 0 chr3 119251731 119251797 -108272781 - MIR SINE MIR -57 205 134 238 311 0 40 chr3 119252437 119252511 -108272067 - MIR SINE MIR -184 78 8 223 239 0 0 chr3 119252537 119252583 -108271995 - MIR SINE MIR -107 155 110 25 0 0 0 chr3 119253230 119253255 -108271323 + AT_rich Low_complexity Low_complexity 1 25 0 470 304 22 7 chr3 119253581 119253716 -108270862 + MIR3 SINE MIR 31 167 -41 1282 137 7 82 chr3 119253837 119254129 -108270449 - L1MA6 LINE L1 -15 6285 6016 26 64 0 0 chr3 119254343 119254390 -108270188 + AT_rich Low_complexity Low_complexity 1 47 0 27 62 0 0 chr3 119255478 119255526 -108269052 + AT_rich Low_complexity Low_complexity 1 48 0 21 57 0 0 chr3 119255940 119255975 -108268603 + AT_rich Low_complexity Low_complexity 1 35 0 3262 187 58 49 chr3 119257574 119258424 -108266154 - L1MC3 LINE L1 0 7785 6929 187 250 0 0 chr3 119258454 119258490 -108266088 + L2 LINE L2 3210 3245 -27 848 294 115 29 chr3 119258688 119259165 -108265413 - MLT1H LTR MaLR -29 520 3 489 208 62 23 chr3 119260034 119260164 -108264414 + MIR SINE MIR 104 238 -24 23 33 0 0 chr3 119262015 119262045 -108262533 + AT_rich Low_complexity Low_complexity 1 30 0 203 268 167 38 chr3 119262485 119262625 -108261953 + MIR3 SINE MIR 49 202 -18 407 252 41 34 chr3 119263020 119263167 -108261411 - MLT1K LTR MaLR -3 585 438 460 113 0 0 chr3 119263196 119263258 -108261320 - THE1B LTR MaLR 0 355 294 1128 29 0 0 chr3 119263258 119263397 -108261181 - AluY SINE Alu 0 311 173 1922 105 23 36 chr3 119263398 119263704 -108260874 - THE1B LTR MaLR -62 302 1 2119 82 54 0 chr3 119263813 119264093 -108260485 - AluY SINE Alu -3 308 14 559 330 32 60 chr3 119264115 119264397 -108260181 - MLT1K LTR MaLR -313 275 2 399 254 87 32 chr3 119264447 119264573 -108260005 - L2 LINE L2 -3 3310 3178 740 203 54 0 chr3 119266214 119266362 -108258216 + FRAM SINE Alu 2 157 -19 355 106 30 0 chr3 119266363 119266429 -108258149 + GA-rich Low_complexity Low_complexity 2 69 0 186 133 0 0 chr3 119267352 119267382 -108257196 + (TTG)n Simple_repeat Simple_repeat 1 30 0 321 311 43 30 chr3 119269331 119269495 -108255083 + MARNA DNA Mariner 64 229 -357 2471 66 0 0 chr3 119269979 119270283 -108254295 + AluY SINE Alu 1 304 -7 1289 198 50 18 chr3 119270327 119270605 -108253973 - AluJo SINE Alu -25 287 1 2008 153 24 16 chr3 119271664 119272036 -108252542 - THE1C LTR MaLR 0 375 1 5620 152 22 14 chr3 119272675 119274090 -108250488 + L1MA6 LINE L1 4366 5798 -502 369 0 0 0 chr3 119274090 119274131 -108250447 + (CA)n Simple_repeat Simple_repeat 2 42 0 5620 152 22 14 chr3 119274131 119274639 -108249939 + L1MA6 LINE L1 5798 6300 0 1513 153 3 49 chr3 119274907 119275194 -108249384 + AluJb SINE Alu 12 285 -27 672 234 0 0 chr3 119278598 119278726 -108245852 + FLAM_A SINE Alu 2 129 -4 344 130 22 36 chr3 119278728 119278870 -108245708 + GA-rich Low_complexity Low_complexity 1 139 0 540 283 85 36 chr3 119278870 119279315 -108245263 + L1M4 LINE L1 2154 2620 -3526 7227 114 3 0 chr3 119279572 119281412 -108243166 - L1PA8A LINE L1 -1 6130 4292 396 289 51 45 chr3 119281427 119281583 -108242995 - MIR SINE MIR -28 234 78 35 0 0 0 chr3 119281599 119281634 -108242944 + AT_rich Low_complexity Low_complexity 1 35 0 663 245 62 24 chr3 119281761 119281969 -108242609 - MLT1K LTR MaLR -2 586 371 258 211 88 0 chr3 119282076 119282133 -108242445 + L2 LINE L2 3231 3292 -21 2146 102 3 34 chr3 119282137 119282459 -108242119 - AluSx SINE Alu 0 312 1 2474 55 0 3 chr3 119282639 119282950 -108241628 + AluY SINE Alu 1 310 -1 1859 190 42 69 chr3 119283043 119283299 -108241279 + MER66B LTR ERV1 6 246 -240 1589 117 47 4 chr3 119283299 119283593 -108240985 + AluSx SINE Alu 14 318 0 1859 190 42 69 chr3 119283593 119283828 -108240750 + MER66B LTR ERV1 246 486 0 1112 118 4 0 chr3 119284640 119284793 -108239785 - L1PA13 LINE L1 -276 5892 5739 1745 68 56 0 chr3 119284793 119285044 -108239534 + L1PA13 LINE L1 5898 6163 0 1112 118 4 0 chr3 119285044 119285061 -108239517 - L1PA12 LINE L1 -429 5739 5724 263 267 117 78 chr3 119287005 119287185 -108237393 + L2 LINE L2 3123 3309 -4 266 106 21 0 chr3 119288477 119288524 -108236054 + (TG)n Simple_repeat Simple_repeat 2 49 0 731 315 64 21 chr3 119288555 119288882 -108235696 - MER102b DNA MER1_type 0 341 1 190 258 16 65 chr3 119289164 119289226 -108235352 - MIR SINE MIR -131 77 19 346 230 14 0 chr3 119289281 119289355 -108235223 - L2 LINE L2 0 3313 3239 22 0 0 0 chr3 119289917 119289939 -108234639 + AT_rich Low_complexity Low_complexity 1 22 0 24 53 0 0 chr3 119291733 119291771 -108232807 + AT_rich Low_complexity Low_complexity 1 38 0 683 231 162 34 chr3 119292288 119292522 -108232056 - L1ME2 LINE L1 -2 6162 5899 181 423 9 18 chr3 119292752 119292863 -108231715 - L2 LINE L2 -2088 1226 1117 26 30 0 0 chr3 119293536 119293569 -108231009 + AT_rich Low_complexity Low_complexity 1 33 0 634 301 66 18 chr3 119294469 119294695 -108229883 + MIR SINE MIR 20 256 -6 713 243 88 90 chr3 119296279 119296934 -108227644 - L1ME LINE L1 -5152 918 265 308 244 22 78 chr3 119296951 119297041 -108227537 + L1ME LINE L1 101 185 -5885 290 226 97 11 chr3 119297392 119297485 -108227093 + MIR SINE MIR 100 200 -62 245 228 41 32 chr3 119297485 119297608 -108226970 + (TA)n Simple_repeat Simple_repeat 2 125 0 294 29 0 0 chr3 119297608 119297643 -108226935 + (CA)n Simple_repeat Simple_repeat 2 36 0 22 0 0 0 chr3 119297963 119297985 -108226593 + AT_rich Low_complexity Low_complexity 1 22 0 2480 154 25 20 chr3 119299143 119299630 -108224948 - L1MA8 LINE L1 -1 6290 5802 225 83 0 0 chr3 119299653 119299689 -108224889 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 630 129 32 19 chr3 119349838 119349993 -108174585 + GA-rich Low_complexity Low_complexity 4 160 0 286 297 9 45 chr3 119350055 119350166 -108174412 + MIR3 SINE MIR 100 206 -2 262 136 17 68 chr3 119350464 119350523 -108174055 - MER5A DNA MER1_type -83 106 51 23 0 0 0 chr3 119350849 119350872 -108173706 + AT_rich Low_complexity Low_complexity 1 23 0 215 133 22 0 chr3 119351743 119351788 -108172790 + (TG)n Simple_repeat Simple_repeat 1 46 0 8019 123 17 30 chr3 119351863 119353189 -108171389 - THE1C-int LTR MaLR -271 1309 1 2609 98 8 16 chr3 119353189 119353567 -108171011 - THE1C LTR MaLR 0 375 1 203 282 19 68 chr3 119354369 119354472 -108170106 + MIR3 SINE MIR 73 170 -38 220 119 24 24 chr3 119354535 119354577 -108170001 - MIR SINE MIR 0 262 221 1931 216 73 9 chr3 119354579 119355046 -108169532 + MLT1D LTR MaLR 3 499 -6 534 237 107 12 chr3 119355050 119355219 -108169359 - MIR SINE MIR -31 231 47 365 121 0 15 chr3 119355631 119355697 -108168881 + (TTCC)n Simple_repeat Simple_repeat 2 66 0 1643 200 3 7 chr3 119355794 119356178 -108168400 - AluJo SINE Alu 0 385 3 22 0 0 0 chr3 119357508 119357530 -108167048 + AT_rich Low_complexity Low_complexity 1 22 0 378 61 0 0 chr3 119358047 119358096 -108166482 + (TG)n Simple_repeat Simple_repeat 1 49 0 2414 65 0 0 chr3 119358971 119359265 -108165313 + AluY SINE Alu 3 296 -15 295 338 127 19 chr3 119359278 119359491 -108165087 - MIR SINE MIR -7 255 20 189 0 0 0 chr3 119359719 119359740 -108164838 + (TG)n Simple_repeat Simple_repeat 2 22 0 236 258 52 21 chr3 119361476 119361573 -108163005 + CT-rich Low_complexity Low_complexity 3 102 0 256 289 13 13 chr3 119361930 119362006 -108162572 + MIR3 SINE MIR 102 177 -31 23 0 0 0 chr3 119362753 119362776 -108161802 + AT_rich Low_complexity Low_complexity 1 23 0 226 317 99 10 chr3 119365230 119365331 -108159247 - MIR SINE MIR -1 261 152 3539 107 74 72 chr3 119365331 119366114 -108158464 - LTR1 LTR ERV1 0 785 1 415 301 26 13 chr3 119366161 119366314 -108158264 - MIR SINE MIR -106 156 2 1864 159 138 5 chr3 119366386 119366764 -108157814 - MSTA LTR MaLR 0 428 1 30 0 0 0 chr3 119366864 119366894 -108157684 + AT_rich Low_complexity Low_complexity 1 30 0 3451 139 41 28 chr3 119368310 119368986 -108155592 - L1MC2 LINE L1 -9 6335 5651 261 311 47 27 chr3 119369512 119369660 -108154918 + MIR SINE MIR 4 154 -108 5365 165 22 22 chr3 119369828 119371121 -108153457 - L1MA9 LINE L1 -38 6274 4974 733 312 68 27 chr3 119371268 119371710 -108152868 - LTR16B LTR ERVL -2 462 3 222 300 73 55 chr3 119375383 119375493 -108149085 + L2 LINE L2 3202 3313 0 203 156 0 0 chr3 119376271 119376303 -108148275 + (CA)n Simple_repeat Simple_repeat 1 32 0 863 193 68 16 chr3 119376765 119376957 -108147621 + MER20 DNA MER1_type 18 219 0 195 344 65 11 chr3 119379091 119379184 -108145394 - L2 LINE L2 -20 3293 3196 28 61 0 0 chr3 119380512 119380561 -108144017 + AT_rich Low_complexity Low_complexity 1 49 0 26 50 0 0 chr3 119380685 119380725 -108143853 + AT_rich Low_complexity Low_complexity 1 40 0 221 186 23 0 chr3 119381235 119381278 -108143300 + CT-rich Low_complexity Low_complexity 1 44 0 2872 3 0 0 chr3 119382239 119382552 -108142026 + AluYb8 SINE Alu 1 313 -5 276 252 58 10 chr3 119382553 119382656 -108141922 + MER103 DNA DNA 59 166 0 406 323 95 37 chr3 119382760 119382949 -108141629 + MIR SINE MIR 49 248 -14 183 42 0 0 chr3 119383005 119383029 -108141549 + (GGAAA)n Simple_repeat Simple_repeat 1 24 0 446 293 34 75 chr3 119383896 119384077 -108140501 + MIR SINE MIR 34 204 -58 2579 45 0 3 chr3 119384077 119384389 -108140189 + AluY SINE Alu 1 311 0 446 293 34 75 chr3 119384389 119384446 -108140132 + MIR SINE MIR 204 262 0 21 36 0 0 chr3 119385193 119385221 -108139357 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 119385479 119385507 -108139071 + AT_rich Low_complexity Low_complexity 1 28 0 219 226 0 32 chr3 119386056 119386118 -108138460 + (TA)n Simple_repeat Simple_repeat 2 61 0 284 171 34 34 chr3 119386209 119386297 -108138281 + (TA)n Simple_repeat Simple_repeat 2 89 0 191 32 65 0 chr3 119387918 119387949 -108136629 + T-rich Low_complexity Low_complexity 2 34 0 348 256 102 51 chr3 119388532 119388708 -108135870 + MIR3 SINE MIR 19 203 -5 2124 88 7 0 chr3 119389813 119390107 -108134471 + L1PA13 LINE L1 5856 6151 -12 198 167 0 0 chr3 119390208 119390244 -108134334 + (CA)n Simple_repeat Simple_repeat 2 37 0 450 312 19 26 chr3 119392674 119392828 -108131750 - MER5A DNA MER1_type 0 189 37 21 36 0 0 chr3 119393021 119393049 -108131529 + AT_rich Low_complexity Low_complexity 1 28 0 1239 219 48 22 chr3 119393565 119393835 -108130743 + AluJb SINE Alu 13 289 -23 194 375 81 49 chr3 119393851 119394198 -108130380 - L2 LINE L2 -262 3010 2646 3063 156 60 0 chr3 119394989 119395488 -108129090 - MER1A DNA MER1_type 0 529 1 223 286 48 0 chr3 119396525 119396588 -108127990 - MIR3 SINE MIR -31 177 112 458 307 145 0 chr3 119396665 119396831 -108127747 + MIR SINE MIR 2 191 -71 2173 135 0 0 chr3 119397302 119397613 -108126965 - AluSx SINE Alu -1 311 1 851 245 5 0 chr3 119398054 119398242 -108126336 - MER5A DNA MER1_type 0 189 1 204 357 122 24 chr3 119398465 119398678 -108125900 + L2 LINE L2 2544 2777 -537 203 310 190 20 chr3 119398816 119398916 -108125662 + L2 LINE L2 2932 3048 -224 21 0 0 0 chr3 119400849 119400870 -108123708 + AT_rich Low_complexity Low_complexity 1 21 0 352 168 19 45 chr3 119402323 119402478 -108122100 + CT-rich Low_complexity Low_complexity 2 152 0 432 198 132 25 chr3 119405123 119405244 -108119334 - L2 LINE L2 -1 3312 3179 227 210 32 16 chr3 119405669 119405731 -108118847 - L2 LINE L2 -1 3312 3250 214 273 30 15 chr3 119405789 119405855 -108118723 + L2 LINE L2 3235 3301 -12 294 290 153 30 chr3 119406896 119407027 -108117551 - MIR SINE MIR -70 192 46 198 299 15 15 chr3 119407149 119407216 -108117362 + L2 LINE L2 3244 3310 -3 188 270 11 34 chr3 119410552 119410641 -108113937 - L2 LINE L2 -76 3237 3151 27 29 0 0 chr3 119410970 119411004 -108113574 + AT_rich Low_complexity Low_complexity 1 34 0 193 385 29 10 chr3 119412629 119412733 -108111845 + MER5A DNA MER1_type 68 173 -16 246 234 28 75 chr3 119414518 119414625 -108109953 + MER5A DNA MER1_type 81 182 -7 629 323 15 5 chr3 119414913 119415111 -108109467 - MIR SINE MIR -60 202 3 1971 213 27 49 chr3 119415277 119415803 -108108775 - MLT2B1 LTR ERVL -6 514 1 22 0 0 0 chr3 119416949 119416971 -108107607 + AT_rich Low_complexity Low_complexity 1 22 0 258 229 167 10 chr3 119418147 119418243 -108106335 - MIR SINE MIR -77 185 75 302 296 96 36 chr3 119420026 119420215 -108104363 - MIR SINE MIR -51 211 17 23 68 0 0 chr3 119420330 119420374 -108104204 + AT_rich Low_complexity Low_complexity 1 44 0 698 146 41 0 chr3 119420379 119420550 -108104028 + (TA)n Simple_repeat Simple_repeat 2 179 0 1477 197 18 23 chr3 119420550 119420863 -108103715 - MLT1A1 LTR MaLR -17 348 1 2458 231 64 30 chr3 119420863 119422051 -108102527 - L1ME2 LINE L1 -91 6142 4912 1549 246 68 22 chr3 119422052 119422730 -108101848 - L1ME2 LINE L1 -1421 4794 4086 1166 286 84 33 chr3 119422865 119423489 -108101089 - MER77 LTR ERV1 -1 604 53 1736 262 92 31 chr3 119423516 119424028 -108100550 - L1ME2 LINE L1 -2143 4072 3593 2327 101 0 0 chr3 119424028 119424325 -108100253 - AluSp SINE Alu -16 297 1 1736 262 92 31 chr3 119424325 119424747 -108099831 - L1ME2 LINE L1 -2622 3593 3081 2938 6 0 0 chr3 119424888 119425206 -108099372 - AluYb8 SINE Alu 0 318 1 431 262 32 54 chr3 119425207 119425428 -108099150 - L1ME2 LINE L1 -3327 2888 2673 604 277 65 20 chr3 119425440 119425924 -108098654 - L1ME2 LINE L1 -4371 2025 1474 858 182 0 59 chr3 119425936 119425984 -108098594 + FRAM SINE Alu 1 50 -252 1696 165 61 0 chr3 119425984 119426263 -108098315 + AluSx SINE Alu 1 296 -16 858 182 0 59 chr3 119426263 119426384 -108098194 + FRAM SINE Alu 50 160 -6 628 258 176 31 chr3 119426388 119426988 -108097590 - L1ME2 LINE L1 -5012 1326 671 246 352 39 28 chr3 119427131 119427313 -108097265 - L1ME2 LINE L1 -6091 305 122 430 228 0 0 chr3 119427368 119427447 -108097131 - MER2 DNA MER2_type -266 79 1 674 234 78 0 chr3 119427490 119427682 -108096896 - L1ME LINE L1 -3566 2514 2308 971 265 108 67 chr3 119427708 119429160 -108095418 - L1ME LINE L1 -4182 2079 520 2023 93 0 96 chr3 119429246 119429610 -108094968 - AluSx SINE Alu 0 334 1 333 257 38 89 chr3 119429675 119429912 -108094666 - L1ME LINE L1 -5526 544 320 319 311 11 0 chr3 119429977 119430067 -108094511 - L1ME LINE L1 -5921 149 59 24 0 0 0 chr3 119430289 119430313 -108094265 + AT_rich Low_complexity Low_complexity 1 24 0 324 302 16 23 chr3 119430422 119430551 -108094027 + GA-rich Low_complexity Low_complexity 2 129 0 290 345 52 9 chr3 119430866 119430982 -108093596 - L2 LINE L2 -12 3301 3181 227 307 53 41 chr3 119431590 119431834 -108092744 + L1ME LINE L1 842 1088 -4982 741 234 34 26 chr3 119431846 119432111 -108092467 + L1ME3A LINE L1 5744 6010 -160 221 150 0 25 chr3 119432150 119432190 -108092388 + (GGGA)n Simple_repeat Simple_repeat 1 39 0 854 185 16 32 chr3 119432332 119432521 -108092057 - MER5A DNA MER1_type 0 189 4 4825 82 6 0 chr3 119433307 119433956 -108090622 - L1PA7 LINE L1 0 6154 5502 26 64 0 0 chr3 119434211 119434258 -108090320 + AT_rich Low_complexity Low_complexity 1 47 0 1969 148 0 7 chr3 119434270 119434573 -108090005 + AluSx SINE Alu 9 309 -3 186 133 0 0 chr3 119434699 119434729 -108089849 + (TATATG)n Simple_repeat Simple_repeat 2 31 0 289 287 159 20 chr3 119438540 119438735 -108085843 - MIR SINE MIR -6 256 35 329 129 14 0 chr3 119439872 119439942 -108084636 + (CA)n Simple_repeat Simple_repeat 1 71 0 1404 170 78 33 chr3 119440317 119440588 -108083990 + AluJb SINE Alu 1 283 -29 1053 263 87 64 chr3 119442421 119442950 -108081628 + MLT1H LTR MaLR 9 549 0 322 296 56 43 chr3 119443996 119444158 -108080420 + MIR SINE MIR 27 190 -72 1438 214 0 21 chr3 119444180 119444465 -108080113 + AluJo SINE Alu 1 279 -33 2159 148 20 8 chr3 119444466 119444824 -108079754 + THE1B LTR MaLR 3 364 0 940 280 80 24 chr3 119445244 119445694 -108078884 + LTR1B LTR ERV1 39 1214 -328 21 0 0 0 chr3 119446127 119446148 -108078430 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chr3 119447788 119447829 -108076749 + (TG)n Simple_repeat Simple_repeat 2 42 0 2062 106 3 62 chr3 119447843 119448165 -108076413 - AluSx SINE Alu -9 303 1 255 264 16 58 chr3 119448408 119448529 -108076049 - MER65A LTR ERV1 -47 398 283 13052 18 0 0 chr3 119448559 119450861 -108073717 - L1HS LINE L1 0 6155 3853 * 21203 29 0 0 chr3 119450855 119453407 -108071171 + L1P LINE L1 1336 3887 -2259 2499 65 0 0 chr3 119453507 119453816 -108070762 + AluY SINE Alu 1 309 -2 207 235 39 0 chr3 119453855 119453906 -108070672 + GA-rich Low_complexity Low_complexity 4 56 0 265 294 71 40 chr3 119454019 119454145 -108070433 + HsTC2 DNA Tc2 1 130 -1768 1196 248 123 21 chr3 119454171 119454588 -108069990 + HsTC2 DNA Tc2 1274 1765 -133 4136 155 67 8 chr3 119454588 119455368 -108069210 - LTR1B LTR ERV1 0 826 1 1196 248 123 21 chr3 119455368 119455518 -108069060 + HsTC2 DNA Tc2 1765 1898 0 2181 174 16 21 chr3 119455587 119455635 -108068943 - Tigger2a DNA MER2_type -2274 434 387 5132 140 29 20 chr3 119455635 119456528 -108068050 - MER4D LTR ERV1 -2 901 1 2181 174 16 21 chr3 119456528 119456915 -108067663 - Tigger2a DNA MER2_type -2321 387 1 310 284 135 12 chr3 119456977 119457156 -108067422 + MIR SINE MIR 62 262 0 581 249 62 92 chr3 119457574 119458167 -108066411 - L1MC4 LINE L1 -733 7228 6661 258 261 35 0 chr3 119458468 119458583 -108065995 + T-rich Low_complexity Low_complexity 6 124 0 393 106 0 0 chr3 119458728 119458794 -108065784 + L1PA14 LINE L1 6096 6161 0 360 267 0 0 chr3 119458849 119458969 -108065609 + (TA)n Simple_repeat Simple_repeat 1 120 0 631 239 12 73 chr3 119458969 119459163 -108065415 - L1MC4 LINE L1 -1846 5962 5785 1817 225 37 90 chr3 119459163 119459893 -108064685 - LTR8 LTR ERV1 0 691 1 631 239 12 73 chr3 119459893 119459945 -108064633 - L1MC4 LINE L1 -2023 5785 5731 1727 199 55 10 chr3 119459951 119460369 -108064209 + LTR56 LTR ERV1 9 445 0 2786 179 46 4 chr3 119460389 119460950 -108063628 - LTR29 LTR ERV1 0 622 38 1820 223 130 28 chr3 119460950 119461604 -108062974 - MER50 LTR ERV1 0 734 14 267 125 0 0 chr3 119461609 119461649 -108062929 - LTR29 LTR ERV1 -581 41 2 485 267 29 68 chr3 119461657 119461783 -108062795 - L1MC4 LINE L1 -2076 5732 5616 1935 104 41 7 chr3 119461783 119462053 -108062525 + AluSg SINE Alu 12 290 -20 485 267 29 68 chr3 119462053 119462132 -108062446 - L1MC4 LINE L1 -2192 5616 5535 650 212 0 7 chr3 119462132 119462278 -108062300 - MER34C LTR ERV1 0 585 441 3246 66 11 31 chr3 119462280 119462325 -108062253 - MLT2A1 LTR ERVL 0 444 400 288 0 0 0 chr3 119462325 119462357 -108062221 + (CA)n Simple_repeat Simple_repeat 2 33 0 3246 66 11 31 chr3 119462357 119462764 -108061814 - MLT2A1 LTR ERVL -44 400 1 4361 54 9 2 chr3 119462764 119463335 -108061243 - HERVL-A1 LTR ERVL 0 5654 5080 * 5412 75 0 1 chr3 119463324 119464053 -108060525 - HERVL-A1 LTR ERVL -756 4898 4171 * 24027 78 7 12 chr3 119464052 119465655 -108058923 - HERVL-A1 LTR ERVL -2341 3313 1702 2408 78 0 3 chr3 119465655 119465961 -108058617 - AluY SINE Alu -6 305 1 24027 78 7 12 chr3 119465961 119467689 -108056889 - HERVL-A1 LTR ERVL -3952 1702 1 259 113 0 6 chr3 119467689 119467729 -108056849 - MLT2A1 LTR ERVL 0 453 404 315 0 0 0 chr3 119467729 119467764 -108056814 + (CA)n Simple_repeat Simple_repeat 2 36 0 259 113 0 6 chr3 119467764 119467785 -108056793 - MLT2A1 LTR ERVL -49 404 384 2157 140 3 0 chr3 119467848 119468156 -108056422 - AluSx SINE Alu -3 309 1 341 119 0 0 chr3 119468227 119468286 -108056292 + MLT2C2 LTR ERVL 1 59 -405 342 253 0 0 chr3 119468286 119468385 -108056193 + (TA)n Simple_repeat Simple_repeat 1 99 0 2680 93 0 31 chr3 119468385 119468802 -108055776 - MLT2A1 LTR ERVL -40 404 1 1893 176 31 8 chr3 119468809 119469201 -108055377 - MER34C LTR ERV1 -148 437 37 272 229 128 78 chr3 119469201 119469459 -108055119 - L1MC4 LINE L1 -2270 5538 5268 233 23 0 139 chr3 119469478 119469521 -108055057 - MLT2C2 LTR ERVL -12 508 472 312 327 20 0 chr3 119469524 119469625 -108054953 + L1MC4 LINE L1 6616 6718 -1324 308 281 0 11 chr3 119469546 119469635 -108054943 - L1MC4 LINE L1 -1339 6703 6616 * 435 268 140 31 chr3 119469652 119470060 -108054518 + LTR28 LTR ERV1 28 558 -291 291 93 0 0 chr3 119470304 119470347 -108054231 + (TG)n Simple_repeat Simple_repeat 2 44 0 245 119 0 24 chr3 119470349 119470391 -108054187 - MER34C LTR ERV1 -116 469 429 1637 188 45 32 chr3 119470408 119470786 -108053792 - MLT2C2 LTR ERVL -81 383 1 2211 120 7 0 chr3 119470857 119471166 -108053412 + AluSx SINE Alu 1 311 -1 21 36 0 0 chr3 119471297 119471325 -108053253 + AT_rich Low_complexity Low_complexity 1 28 0 2081 139 0 0 chr3 119471968 119472263 -108052315 - AluSx SINE Alu -17 295 1 1534 182 47 109 chr3 119472682 119473430 -108051148 - LTR8A LTR ERV1 -1 726 1 26 64 0 0 chr3 119473560 119473607 -108050971 + AT_rich Low_complexity Low_complexity 1 47 0 288 252 139 9 chr3 119475064 119475179 -108049399 - MIR SINE MIR -16 246 117 530 273 91 34 chr3 119475925 119476101 -108048477 - MIR SINE MIR -75 187 2 238 280 0 0 chr3 119476165 119476240 -108048338 + GA-rich Low_complexity Low_complexity 3 77 0 215 292 0 0 chr3 119476259 119476324 -108048254 - MIR SINE MIR -44 218 154 249 33 0 0 chr3 119476375 119476405 -108048173 + (GA)n Simple_repeat Simple_repeat 2 31 0 236 313 134 30 chr3 119477949 119478083 -108046495 - L2 LINE L2 -9 3263 3116 2934 161 18 63 chr3 119478484 119478902 -108045676 - L1MC2 LINE L1 -13 6331 5895 2360 86 7 7 chr3 119478902 119479203 -108045375 + AluSc SINE Alu 1 301 -8 2934 161 18 63 chr3 119479203 119479292 -108045286 - L1MC2 LINE L1 -449 5895 5803 2138 136 0 0 chr3 119479292 119479594 -108044984 + AluSx SINE Alu 1 302 -10 2934 161 18 63 chr3 119479594 119479762 -108044816 - L1MC2 LINE L1 -541 5803 5686 686 276 113 33 chr3 119479763 119480213 -108044365 + MLT1H LTR MaLR 57 542 -7 1778 187 0 3 chr3 119480767 119481066 -108043512 - AluJo SINE Alu -14 298 1 559 274 109 46 chr3 119481422 119481751 -108042827 + L2 LINE L2 2949 3298 -15 715 240 61 123 chr3 119482154 119482699 -108041879 + MLT1J LTR MaLR 1 511 0 183 264 47 56 chr3 119482753 119482924 -108041654 + MIR SINE MIR 40 207 -55 974 159 0 56 chr3 119483783 119483978 -108040600 - AluJb SINE Alu -8 304 121 642 287 20 10 chr3 119484019 119484221 -108040357 + MLT1I LTR MaLR 200 403 -6 333 303 0 0 chr3 119484695 119484784 -108039794 - L1MC4 LINE L1 -1339 6703 6615 312 322 0 0 chr3 119484711 119484801 -108039777 + L1MC4 LINE L1 6614 6703 -1339 * 377 278 0 0 chr3 119484795 119484885 -108039693 - L1MC4 LINE L1 -1339 6703 6614 324 241 72 0 chr3 119484907 119484990 -108039588 - L1MC4 LINE L1 -1339 6703 6615 309 197 0 0 chr3 119484994 119485060 -108039518 + (TA)n Simple_repeat Simple_repeat 1 66 0 341 300 0 0 chr3 119485061 119485151 -108039427 - L1MC4 LINE L1 -1339 6703 6614 180 111 0 0 chr3 119485151 119485178 -108039400 + (CATATA)n Simple_repeat Simple_repeat 4 30 0 722 253 0 12 chr3 119485178 119485348 -108039230 - AluJb SINE Alu -29 283 116 7542 27 5 0 chr3 119486052 119487156 -108037422 + L1PA4 LINE L1 5044 6151 -4 2155 88 17 0 chr3 119487384 119487678 -108036900 - AluSx SINE Alu -13 299 1 2248 328 68 24 chr3 119487998 119489255 -108035323 - ERVL LTR ERVL -2070 3694 2353 1855 178 44 65 chr3 119489255 119489732 -108034846 - MLT1C LTR MaLR 0 467 1 2248 328 68 24 chr3 119489732 119490052 -108034526 - ERVL LTR ERVL -3411 2353 2048 1469 194 39 9 chr3 119490481 119490811 -108033767 - MLT2C1 LTR ERVL -48 349 10 337 328 13 50 chr3 119490858 119491096 -108033482 - ERVL LTR ERVL -4285 1479 1251 448 167 14 29 chr3 119491793 119491931 -108032647 + CT-rich Low_complexity Low_complexity 4 139 0 788 262 0 0 chr3 119492728 119492896 -108031682 + FAM SINE Alu 1 168 -7 454 288 48 0 chr3 119493423 119493569 -108031009 + MER63A DNA MER1_type 58 210 0 271 272 61 75 chr3 119493916 119494063 -108030515 + L2 LINE L2 3169 3313 0 248 370 60 0 chr3 119495127 119495227 -108029351 + L3 LINE CR1 1464 1569 -8 211 147 0 0 chr3 119495371 119495405 -108029173 - MIR3 SINE MIR -53 155 122 213 358 12 37 chr3 119495442 119495523 -108029055 - MIR SINE MIR -90 118 40 499 282 199 9 chr3 119496325 119496541 -108028037 + MIR SINE MIR 6 262 0 299 241 9 28 chr3 119496643 119496751 -108027827 + (TA)n Simple_repeat Simple_repeat 1 106 0 3306 273 32 36 chr3 119496818 119497875 -108026703 - L2 LINE L2 -1736 1578 526 433 349 59 12 chr3 119498612 119498867 -108025711 - L1M4 LINE L1 -1003 5379 5113 300 297 76 35 chr3 119499167 119499312 -108025266 - L1MEc LINE L1 -4905 1312 1162 249 33 0 0 chr3 119499328 119499358 -108025220 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 958 41 0 8 chr3 119499358 119499474 -108025104 - L1PA3 LINE L1 -6 6149 6035 440 47 47 0 chr3 119499474 119499538 -108025040 + L1HS LINE L1 5974 6040 -115 1821 136 3 50 chr3 119499557 119499874 -108024704 - AluSx SINE Alu -10 302 1 254 175 27 49 chr3 119500004 119500187 -108024391 + (TA)n Simple_repeat Simple_repeat 1 179 0 635 288 147 33 chr3 119500221 119501072 -108023506 - L1MEc LINE L1 -5216 1180 233 445 289 69 90 chr3 119501294 119501707 -108022871 - L1MDa LINE L1 -4816 1724 1331 2126 123 50 31 chr3 119501825 119502182 -108022396 - THE1B LTR MaLR 0 364 1 11518 99 8 1 chr3 119502182 119503752 -108020826 - THE1B-int LTR MaLR 0 1580 1 1909 143 56 34 chr3 119503752 119504108 -108020470 - THE1B LTR MaLR 0 364 1 602 334 30 30 chr3 119504319 119504753 -108019825 - L1MDa LINE L1 -5650 880 447 2141 85 26 29 chr3 119506349 119506655 -108017923 + AluSg SINE Alu 1 305 -5 1920 128 3 7 chr3 119507364 119507673 -108016905 + AluSq SINE Alu 11 313 0 229 287 41 0 chr3 119507733 119507855 -108016723 + L1ME3 LINE L1 2177 2303 -4093 426 175 0 0 chr3 119507882 119507962 -108016616 + (CATATA)n Simple_repeat Simple_repeat 2 81 0 365 318 78 0 chr3 119508080 119508234 -108016344 + L1ME3 LINE L1 2454 2619 -3596 808 205 7 0 chr3 119508364 119508515 -108016063 + AluJb SINE Alu 147 298 -14 729 235 55 13 chr3 119508539 119508777 -108015801 + L1ME3 LINE L1 2707 2954 -3261 1199 261 67 13 chr3 119508788 119509160 -108015418 + L1ME3 LINE L1 5720 6111 -120 869 162 7 0 chr3 119509259 119509407 -108015171 + MLT1B LTR MaLR 1 149 -241 896 170 0 0 chr3 119509407 119509554 -108015024 + FRAM SINE Alu 1 139 -37 961 199 0 69 chr3 119509554 119509800 -108014778 + MLT1B LTR MaLR 160 388 -2 388 285 166 10 chr3 119509819 119510012 -108014566 - MIR SINE MIR -37 225 3 193 273 76 0 chr3 119511132 119511198 -108013380 - MIR SINE MIR -98 164 94 243 0 0 0 chr3 119511668 119511695 -108012883 + (TAGA)n Simple_repeat Simple_repeat 2 28 0 1243 204 21 36 chr3 119511695 119511975 -108012603 - AluJo SINE Alu -36 276 1 2395 109 25 5 chr3 119513362 119513730 -108010848 - THE1C LTR MaLR 0 375 1 209 203 257 0 chr3 119516008 119516082 -108008496 + MIR SINE MIR 168 260 -2 259 211 39 0 chr3 119518823 119518875 -108005703 + L2 LINE L2 3250 3303 -10 225 286 66 22 chr3 119520558 119520649 -108003929 - MIR SINE MIR -55 207 113 2038 113 0 24 chr3 119521420 119521711 -108002867 - AluSq SINE Alu -29 284 1 860 147 0 22 chr3 119522186 119522322 -108002256 - FLAM_C SINE Alu 0 133 1 477 138 0 58 chr3 119524078 119524165 -108000413 - LTR3b LTR ERVK 0 500 419 542 97 0 0 chr3 119524167 119524239 -108000339 - LTR3b LTR ERVK -10 490 419 391 164 0 0 chr3 119524241 119524308 -108000270 - LTR3b LTR ERVK -10 490 424 451 95 40 27 chr3 119524308 119524382 -108000196 - LTR3b LTR ERVK -2 498 424 3335 100 49 0 chr3 119524390 119524859 -107999719 - LTR3b LTR ERVK -8 492 1 476 146 24 188 chr3 119524955 119525168 -107999410 + MER106A DNA MER1_type 35 212 -24 225 279 143 36 chr3 119525535 119525843 -107998735 + L1ME4a LINE L1 5778 6118 -3 189 296 84 0 chr3 119526269 119526340 -107998238 + MIR SINE MIR 90 166 -96 1857 130 68 10 chr3 119526340 119526633 -107997945 + AluSx SINE Alu 1 310 -2 354 194 0 0 chr3 119526636 119526708 -107997870 + (TA)n Simple_repeat Simple_repeat 2 73 0 271 241 41 12 chr3 119526763 119526933 -107997645 + (TA)n Simple_repeat Simple_repeat 1 175 0 2212 97 14 0 chr3 119526968 119527258 -107997320 + AluSg SINE Alu 1 294 -16 2210 106 0 0 chr3 119527625 119527918 -107996660 + AluSg SINE Alu 1 293 -17 608 273 56 70 chr3 119530271 119530285 -107994293 - L2 LINE L2 0 3313 3300 360 0 0 0 chr3 119530285 119530325 -107994253 + (TCCA)n Simple_repeat Simple_repeat 2 41 0 608 273 56 70 chr3 119530325 119530386 -107994192 - L2 LINE L2 -13 3300 3240 1876 167 33 17 chr3 119530386 119530745 -107993833 + MLT1A1 LTR MaLR 1 365 0 608 273 56 70 chr3 119530745 119530954 -107993624 - L2 LINE L2 -73 3240 3032 219 214 163 31 chr3 119531988 119532086 -107992492 + MIR SINE MIR 96 206 -56 212 75 0 25 chr3 119534207 119534247 -107990331 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 1900 144 10 3 chr3 119534287 119534586 -107989992 - AluSx SINE Alu -11 301 1 22 0 0 0 chr3 119534665 119534687 -107989891 + AT_rich Low_complexity Low_complexity 1 22 0 673 294 156 15 chr3 119534863 119535190 -107989388 - L3 LINE CR1 -86 1491 1119 725 238 131 6 chr3 119535192 119535360 -107989218 - MER5A DNA MER1_type 0 189 1 533 286 99 34 chr3 119535394 119535656 -107988922 - L3 LINE CR1 -515 1062 784 394 308 22 108 chr3 119535760 119535945 -107988633 + MER91A DNA MER1_type 28 196 0 2105 141 0 3 chr3 119536821 119537125 -107987453 + AluSx SINE Alu 1 303 -9 1649 131 74 52 chr3 119537930 119538297 -107986281 + THE1C LTR MaLR 1 375 0 53 63 0 0 chr3 119538972 119539067 -107985511 + AT_rich Low_complexity Low_complexity 1 95 0 203 224 17 52 chr3 119539357 119539415 -107985163 + MIR3 SINE MIR 113 168 -40 203 136 45 0 chr3 119539977 119540021 -107984557 + (CATA)n Simple_repeat Simple_repeat 4 49 0 225 0 0 0 chr3 119540556 119540581 -107983997 + (A)n Simple_repeat Simple_repeat 1 25 0 2016 117 10 3 chr3 119540715 119541005 -107983573 + AluSc SINE Alu 1 292 -17 225 211 0 39 chr3 119541638 119541690 -107982888 - MER3 DNA MER1_type -158 51 2 1618 146 23 8 chr3 119543761 119544022 -107980556 - AluSx SINE Alu -47 265 1 2417 71 0 0 chr3 119545774 119546070 -107978508 - AluSg SINE Alu -14 296 1 898 266 39 14 chr3 119550140 119550426 -107974152 + L2 LINE L2 2935 3227 -86 24 53 0 0 chr3 119550537 119550575 -107974003 + AT_rich Low_complexity Low_complexity 1 38 0 35 63 0 0 chr3 119550886 119550949 -107973629 + AT_rich Low_complexity Low_complexity 1 63 0 290 303 66 46 chr3 119551642 119551761 -107972817 - MIR3 SINE MIR -5 203 79 2328 92 0 0 chr3 119551761 119552065 -107972513 + AluSg SINE Alu 1 304 -6 290 303 66 46 chr3 119552065 119552097 -107972481 - MIR3 SINE MIR -129 79 49 353 198 12 0 chr3 119557249 119557330 -107967248 + (TA)n Simple_repeat Simple_repeat 1 82 0 189 0 0 0 chr3 119559825 119559846 -107964732 + (A)n Simple_repeat Simple_repeat 1 21 0 184 302 65 101 chr3 119560613 119560752 -107963826 - MIR SINE MIR -102 160 27 2337 87 0 0 chr3 119562700 119562998 -107961580 + AluSq SINE Alu 1 298 -15 225 132 0 0 chr3 119563681 119563719 -107960859 + (A)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr3 119564579 119564601 -107959977 + AT_rich Low_complexity Low_complexity 1 22 0 2537 205 6 2 chr3 119566547 119567039 -107957539 - L1MC3 LINE L1 -169 7616 7123 1583 189 3 22 chr3 119567073 119567385 -107957193 + AluJo SINE Alu 1 306 -6 22 0 0 0 chr3 119570059 119570081 -107954497 + AT_rich Low_complexity Low_complexity 1 22 0 271 287 109 57 chr3 119570832 119571097 -107953481 - L1ME LINE L1 -329 5792 5514 21 36 0 0 chr3 119572017 119572045 -107952533 + AT_rich Low_complexity Low_complexity 1 28 0 657 205 0 0 chr3 119574207 119574324 -107950254 + FLAM_C SINE Alu 1 117 -16 448 261 138 28 chr3 119574349 119574567 -107950011 - MIR SINE MIR 0 262 21 263 363 35 0 chr3 119574618 119574731 -107949847 - L2 LINE L2 -12 3301 3185 577 285 42 26 chr3 119575043 119575236 -107949342 - MER20 DNA MER1_type -20 199 4 3629 118 2 17 chr3 119575439 119575974 -107948604 - MER1A DNA MER1_type 0 527 1 2056 116 3 0 chr3 119576978 119577262 -107947316 + AluSq SINE Alu 3 287 -26 308 78 39 0 chr3 119577284 119577335 -107947243 + (TGAA)n Simple_repeat Simple_repeat 3 55 0 183 239 22 0 chr3 119577568 119577614 -107946964 - L2 LINE L2 0 3313 3267 187 292 0 0 chr3 119578577 119578625 -107945953 - L2 LINE L2 0 3313 3266 486 114 114 0 chr3 119578627 119578715 -107945863 - MER58 DNA MER1_type -3 2417 2320 239 347 102 0 chr3 119578841 119578939 -107945639 - MIR SINE MIR -60 148 41 451 319 14 24 chr3 119579080 119579290 -107945288 - MIR SINE MIR -13 249 43 372 290 35 18 chr3 119579840 119580009 -107944569 + MER117 DNA MER1_type 6 177 -20 3582 116 25 8 chr3 119580637 119581165 -107943413 + Tigger3b DNA MER2_type 2 538 -693 1118 188 4 30 chr3 119583214 119583448 -107941130 + AluJo SINE Alu 85 312 0 667 261 23 14 chr3 119583565 119583780 -107940798 - L1MC5 LINE L1 -50 7911 7695 296 315 19 19 chr3 119585577 119585685 -107938893 + MIR3 SINE MIR 4 111 -97 487 289 168 0 chr3 119586011 119586201 -107938377 - MIR SINE MIR -36 226 5 1887 145 10 7 chr3 119587058 119587368 -107937210 - AluSx SINE Alu -1 311 1 6759 61 15 0 chr3 119587771 119589385 -107935193 - L1PA7 LINE L1 0 6154 4530 2055 70 0 0 chr3 119589393 119589663 -107934915 + L1P LINE L1 4201 4470 -1676 229 324 83 37 chr3 119590495 119590603 -107933975 + L2 LINE L2 3201 3313 0 384 296 32 17 chr3 119590888 119591182 -107933396 - Tigger8 DNA MER2_type -196 470 128 759 177 20 38 chr3 119592499 119592699 -107931879 - MER6 DNA MER2_type 0 865 -62 22 0 0 0 chr3 119592827 119592849 -107931729 + AT_rich Low_complexity Low_complexity 1 22 0 740 145 0 16 chr3 119592850 119592974 -107931604 - FLAM_C SINE Alu -11 122 1 2356 66 0 0 chr3 119594308 119594597 -107929981 + AluY SINE Alu 14 302 -9 30 77 0 0 chr3 119595021 119595086 -107929492 + AT_rich Low_complexity Low_complexity 1 65 0 213 219 0 0 chr3 119595830 119595871 -107928707 - L2 LINE L2 -13 3259 3219 21 0 0 0 chr3 119596327 119596348 -107928230 + AT_rich Low_complexity Low_complexity 1 21 0 225 159 0 0 chr3 119596390 119596434 -107928144 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 2119 100 17 0 chr3 119596888 119597178 -107927400 + AluSx SINE Alu 1 295 -17 269 332 70 12 chr3 119597752 119597996 -107926582 - L1ME LINE L1 -346 5775 5518 243 245 0 0 chr3 119599004 119599057 -107925521 + (CA)n Simple_repeat Simple_repeat 2 54 0 29 0 0 0 chr3 119599738 119599767 -107924811 + AT_rich Low_complexity Low_complexity 1 29 0 1692 166 7 7 chr3 119600141 119600425 -107924153 - AluJb SINE Alu -24 288 5 2202 100 3 3 chr3 119601042 119601343 -107923235 + AluSc SINE Alu 1 301 -8 32 26 0 0 chr3 119602195 119602234 -107922344 + AT_rich Low_complexity Low_complexity 1 39 0 357 60 0 0 chr3 119602317 119602367 -107922211 - Alu SINE Alu 0 302 253 2062 79 35 17 chr3 119602410 119602575 -107922003 - AluSc SINE Alu -14 295 121 2260 72 3 3 chr3 119602575 119602914 -107921664 - AluY SINE Alu 0 311 1 2062 79 35 17 chr3 119602914 119603038 -107921540 - AluSc SINE Alu -188 121 1 1830 148 3 16 chr3 119604395 119604705 -107919873 + AluSx SINE Alu 1 306 -6 21 36 0 0 chr3 119605073 119605101 -107919477 + AT_rich Low_complexity Low_complexity 1 28 0 2102 118 0 0 chr3 119605869 119606178 -107918400 + AluSc SINE Alu 1 309 0 205 256 17 137 chr3 119606472 119606589 -107917989 + MIR SINE MIR 42 144 -64 271 247 47 0 chr3 119606679 119606764 -107917814 + (TATATG)n Simple_repeat Simple_repeat 4 92 0 21 0 0 0 chr3 119607259 119607280 -107917298 + AT_rich Low_complexity Low_complexity 1 21 0 635 276 132 39 chr3 119607525 119608088 -107916490 + L2 LINE L2 2664 3280 -33 231 271 17 0 chr3 119609849 119609908 -107914670 + GA-rich Low_complexity Low_complexity 6 65 0 27 81 0 0 chr3 119610267 119610329 -107914249 + AT_rich Low_complexity Low_complexity 1 62 0 22 0 0 0 chr3 119611118 119611140 -107913438 + AT_rich Low_complexity Low_complexity 1 22 0 1611 82 0 0 chr3 119611243 119611438 -107913140 - AluY SINE Alu -17 294 100 229 265 0 0 chr3 119612133 119612201 -107912377 + L1ME LINE L1 5830 5897 -224 257 118 20 0 chr3 119612593 119612644 -107911934 + GA-rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr3 119612917 119612938 -107911640 + AT_rich Low_complexity Low_complexity 1 21 0 186 309 57 57 chr3 119613941 119613957 -107910621 + MER5A DNA MER1_type 1 16 -173 556 251 135 0 chr3 119613957 119614096 -107910482 - MER5A DNA MER1_type 0 189 24 189 0 0 0 chr3 119614096 119614117 -107910461 + (CTG)n Simple_repeat Simple_repeat 2 22 0 556 251 135 0 chr3 119614117 119614140 -107910438 - MER5A DNA MER1_type -165 24 5 186 310 35 78 chr3 119614131 119614247 -107910331 - L2 LINE L2 -24 3289 3179 * 570 15 0 0 chr3 119615713 119615780 -107908798 + (GA)n Simple_repeat Simple_repeat 2 68 0 2194 8 0 16 chr3 119616243 119616498 -107908080 - L1HS LINE L1 0 6155 5905 493 277 52 45 chr3 119616842 119617089 -107907489 + L1ME LINE L1 5491 5739 -382 560 284 120 21 chr3 119617425 119618000 -107906578 + L1ME3A LINE L1 4214 4845 -1301 1853 197 58 26 chr3 119618010 119618391 -107906187 + MSTA LTR MaLR 1 417 -40 389 127 0 0 chr3 119618391 119618454 -107906124 - MSTA LTR MaLR 0 428 366 417 243 137 114 chr3 119618460 119618847 -107905731 + L1ME3A LINE L1 5762 6157 -13 26 0 0 0 chr3 119618848 119618874 -107905704 + AT_rich Low_complexity Low_complexity 1 26 0 6239 184 117 45 chr3 119619675 119621183 -107903395 - MER52A LTR ERV1 -18 1737 122 22 0 0 0 chr3 119621730 119621752 -107902826 + AT_rich Low_complexity Low_complexity 1 22 0 1936 155 7 3 chr3 119622243 119622547 -107902031 - AluJb SINE Alu -3 309 5 2015 138 47 44 chr3 119622572 119622935 -107901643 + THE1B LTR MaLR 1 364 0 10587 106 8 45 chr3 119622935 119624575 -107900003 + THE1B-int LTR MaLR 1 1580 0 1716 146 139 12 chr3 119624575 119624898 -107899680 + THE1B LTR MaLR 1 364 0 1256 220 70 51 chr3 119624972 119625344 -107899234 - LTR40a LTR ERVL -21 498 120 475 351 35 0 chr3 119625471 119625645 -107898933 - MER102b DNA MER1_type -10 331 152 4595 146 46 1 chr3 119625675 119626464 -107898114 + Tigger1 DNA MER2_type 246 1069 -1349 507 125 67 48 chr3 119626464 119626568 -107898010 + L1PA16 LINE L1 6061 6166 0 819 214 30 30 chr3 119626569 119626737 -107897841 + MLT1A1 LTR MaLR 146 313 -52 7591 145 48 14 chr3 119626749 119628062 -107896516 + Tigger1 DNA MER2_type 1061 2418 0 198 103 0 0 chr3 119628766 119628795 -107895783 + (T)n Simple_repeat Simple_repeat 1 29 0 746 263 20 59 chr3 119628911 119629166 -107895412 - MIR SINE MIR -17 245 1 233 372 89 66 chr3 119629263 119629655 -107894923 - L2 LINE L2 -21 3251 2851 2150 104 3 17 chr3 119630252 119630549 -107894029 + AluSp SINE Alu 2 294 -19 2374 248 60 30 chr3 119631318 119632083 -107892495 + L1PB2 LINE L1 3 790 -6073 8126 166 19 16 chr3 119632093 119634709 -107889869 + L1PB2 LINE L1 4180 6805 -62 761 173 31 0 chr3 119635207 119635334 -107889244 + MSTC LTR MaLR 1 131 -297 243 0 0 0 chr3 119636582 119636609 -107887969 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 185 194 14 97 chr3 119637119 119637191 -107887387 + L2 LINE L2 2988 3053 -219 195 364 0 0 chr3 119638234 119638289 -107886289 - L2 LINE L2 -342 2972 2918 223 247 124 52 chr3 119638436 119638533 -107886045 - MER5B DNA MER1_type -53 125 22 1348 201 54 0 chr3 119638574 119638868 -107885710 + AluJo SINE Alu 1 310 -2 261 83 0 0 chr3 119639334 119639370 -107885208 + (TG)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr3 119640370 119640391 -107884187 + AT_rich Low_complexity Low_complexity 1 21 0 256 264 33 11 chr3 119640710 119640801 -107883777 + (CATATA)n Simple_repeat Simple_repeat 2 94 0 2074 137 3 0 chr3 119641080 119641372 -107883206 - AluSq SINE Alu -20 293 1 24 0 0 0 chr3 119641710 119641734 -107882844 + AT_rich Low_complexity Low_complexity 1 24 0 2446 72 7 3 chr3 119641873 119642180 -107882398 - AluY SINE Alu -3 308 1 1932 117 50 7 chr3 119643793 119644092 -107880486 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 119644555 119644576 -107880002 + AT_rich Low_complexity Low_complexity 1 21 0 300 277 48 0 chr3 119644747 119644830 -107879748 - L2 LINE L2 -2 3270 3184 190 304 154 40 chr3 119644901 119645128 -107879450 - L2 LINE L2 -2417 897 645 21 0 0 0 chr3 119646426 119646447 -107878131 + AT_rich Low_complexity Low_complexity 1 21 0 277 238 47 93 chr3 119647309 119647523 -107877055 + L1ME4a LINE L1 5870 6073 -48 2327 101 0 0 chr3 119647807 119648104 -107876474 - AluSp SINE Alu -16 297 1 255 277 105 16 chr3 119648132 119648627 -107875951 - L1M4 LINE L1 -2702 3444 2894 1980 128 0 6 chr3 119648677 119648997 -107875581 - AluYb8 SINE Alu 0 318 1 1387 196 26 17 chr3 119649502 119649836 -107874742 + L1MD3 LINE L1 6673 7060 -935 1299 173 0 68 chr3 119649843 119650092 -107874486 + AluJo SINE Alu 47 278 -34 413 198 0 12 chr3 119650152 119650233 -107874345 - L1ME3A LINE L1 -179 5991 5912 1465 168 53 7 chr3 119651641 119651926 -107872652 + L1MB7 LINE L1 5874 6171 -13 22 0 0 0 chr3 119652791 119652813 -107871765 + AT_rich Low_complexity Low_complexity 1 22 0 245 277 128 54 chr3 119653959 119654107 -107870471 + MIR3 SINE MIR 45 203 -5 1079 92 255 5 chr3 119654971 119655155 -107869423 + MER30 DNA MER1_type 1 230 0 296 316 11 0 chr3 119655171 119655266 -107869312 + MIR SINE MIR 72 167 -95 738 246 166 61 chr3 119655296 119655749 -107868829 + MLT1H1 LTR MaLR 1 543 -6 30 45 0 0 chr3 119656737 119656781 -107867797 + AT_rich Low_complexity Low_complexity 1 44 0 372 376 40 0 chr3 119657093 119657242 -107867336 - L2 LINE L2 -1 3271 3117 604 212 152 12 chr3 119658629 119658794 -107865784 + MER5A DNA MER1_type 2 189 0 307 259 76 63 chr3 119661081 119661239 -107863339 - MIR3 SINE MIR -9 199 40 768 253 94 31 chr3 119661400 119661523 -107863055 + L1ME3A LINE L1 5589 5703 -467 2091 85 11 4 chr3 119661523 119661804 -107862774 - AluSc SINE Alu -14 295 13 768 253 94 31 chr3 119661804 119662000 -107862578 + L1ME3A LINE L1 5703 5928 -242 1952 101 70 0 chr3 119662339 119662626 -107861952 - AluSg SINE Alu -3 307 1 5608 111 19 24 chr3 119662662 119664211 -107860367 + L1PA15 LINE L1 4607 6156 -9 36 0 0 0 chr3 119664902 119664938 -107859640 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 119666527 119666548 -107858030 + AT_rich Low_complexity Low_complexity 1 21 0 375 230 122 79 chr3 119666661 119666768 -107857810 + MIR3 SINE MIR 38 154 -54 527 227 58 23 chr3 119666768 119666940 -107857638 + MER5B DNA MER1_type 1 178 0 375 230 122 79 chr3 119666940 119666971 -107857607 + MIR3 SINE MIR 154 182 -26 440 328 23 17 chr3 119666974 119667151 -107857427 + MER5B DNA MER1_type 1 178 0 1013 223 45 19 chr3 119670722 119670843 -107853735 + MER33 DNA MER1_type 7 123 -2462 2024 122 0 7 chr3 119670843 119671138 -107853440 + AluSg SINE Alu 1 293 -17 1013 223 45 19 chr3 119671138 119671326 -107853252 + MER33 DNA MER1_type 123 324 0 228 366 33 7 chr3 119671623 119671776 -107852802 + L2 LINE L2 2582 2738 -576 1966 148 0 10 chr3 119671907 119672210 -107852368 - AluSx SINE Alu -12 300 1 208 197 15 15 chr3 119672497 119672563 -107852015 + GA-rich Low_complexity Low_complexity 3 68 0 608 195 0 0 chr3 119673879 119673992 -107850586 + FLAM_C SINE Alu 1 113 -30 27 49 0 0 chr3 119674201 119674242 -107850336 + AT_rich Low_complexity Low_complexity 1 41 0 392 304 101 36 chr3 119674380 119674548 -107850030 - MIR3 SINE MIR -6 202 24 238 295 26 0 chr3 119675613 119675691 -107848887 - L2 LINE L2 0 3313 3234 26 0 0 0 chr3 119677002 119677028 -107847550 + AT_rich Low_complexity Low_complexity 1 26 0 478 226 66 44 chr3 119678078 119678215 -107846363 + L1MD2 LINE L1 6135 6274 -85 2127 101 24 0 chr3 119678319 119678607 -107845971 - AluSq SINE Alu -18 295 1 347 331 106 74 chr3 119678861 119679305 -107845273 - L2 LINE L2 -3 3269 2812 192 280 23 91 chr3 119679487 119679619 -107844959 + MIR SINE MIR 85 207 -55 260 105 0 0 chr3 119680151 119680189 -107844389 + L1MA9 LINE L1 6275 6312 0 21 0 0 0 chr3 119680189 119680210 -107844368 + AT_rich Low_complexity Low_complexity 1 21 0 199 344 94 42 chr3 119681238 119681526 -107843052 + L2 LINE L2 2560 2862 -452 5839 60 5 20 chr3 119682039 119682822 -107841756 + L1PA7 LINE L1 5384 6154 0 2119 125 0 6 chr3 119685809 119686120 -107838458 + AluSx SINE Alu 1 309 -3 3512 123 19 4 chr3 119686465 119686984 -107837594 - MER1A DNA MER1_type 0 527 1 297 68 0 0 chr3 119687853 119687897 -107836681 + (TCTA)n Simple_repeat Simple_repeat 3 46 0 228 271 194 23 chr3 119688548 119688677 -107835901 - L1MC/D LINE L1 -1898 5910 5760 22 35 0 0 chr3 119688683 119688712 -107835866 + AT_rich Low_complexity Low_complexity 1 29 0 386 345 39 34 chr3 119691602 119691808 -107832770 + L2 LINE L2 3102 3308 -5 201 241 35 17 chr3 119691974 119692032 -107832546 + GA-rich Low_complexity Low_complexity 1 59 0 229 238 32 0 chr3 119692130 119692193 -107832385 + L2 LINE L2 3244 3308 -5 22 35 0 0 chr3 119693473 119693502 -107831076 + AT_rich Low_complexity Low_complexity 1 29 0 195 42 0 0 chr3 119694091 119694115 -107830463 + (TG)n Simple_repeat Simple_repeat 2 25 0 829 285 126 21 chr3 119694661 119694994 -107829584 - MLT1J LTR MaLR -143 368 1 1645 169 12 38 chr3 119695982 119696302 -107828276 + AluJo SINE Alu 1 312 0 294 250 33 0 chr3 119698281 119698341 -107826237 - L2 LINE L2 -241 3072 3011 33 0 0 0 chr3 119698626 119698659 -107825919 + AT_rich Low_complexity Low_complexity 1 33 0 242 287 58 0 chr3 119699373 119699460 -107825118 - L2 LINE L2 -1 3312 3221 268 344 203 5 chr3 119699540 119699732 -107824846 - L2 LINE L2 -259 3054 2825 27 81 0 0 chr3 119700272 119700334 -107824244 + AT_rich Low_complexity Low_complexity 1 62 0 1217 141 115 44 chr3 119700685 119700977 -107823601 + L1MA8 LINE L1 5979 6296 -4 2409 71 0 0 chr3 119700980 119701277 -107823301 + AluY SINE Alu 1 297 -14 27 0 0 0 chr3 119702988 119703015 -107821563 + AT_rich Low_complexity Low_complexity 1 27 0 26 30 0 0 chr3 119704318 119704351 -107820227 + AT_rich Low_complexity Low_complexity 1 33 0 1069 168 8 59 chr3 119704676 119704914 -107819664 - AluJo SINE Alu 0 312 87 1605 104 183 0 chr3 119705270 119705521 -107819057 - AluSc SINE Alu -12 297 1 741 266 74 0 chr3 119706178 119706381 -107818197 - MER58A DNA MER1_type 0 224 7 2304 73 0 3 chr3 119707350 119707638 -107816940 - AluY SINE Alu -24 287 1 1322 258 113 27 chr3 119707765 119708241 -107816337 + LTR40a LTR ERVL 3 519 0 279 350 8 17 chr3 119708593 119708710 -107815868 + MLT1L LTR MaLR 359 474 -141 830 243 67 0 chr3 119708860 119709070 -107815508 + MER58A DNA MER1_type 1 224 0 1444 230 69 25 chr3 119709785 119710232 -107814346 + MLT1C LTR MaLR 1 467 0 23 33 0 0 chr3 119712175 119712205 -107812373 + AT_rich Low_complexity Low_complexity 1 30 0 221 191 21 0 chr3 119712930 119712977 -107811601 + (TTG)n Simple_repeat Simple_repeat 1 48 0 333 0 0 0 chr3 119713277 119713314 -107811264 + (CA)n Simple_repeat Simple_repeat 1 37 0 283 280 80 0 chr3 119715969 119716044 -107808534 - MIR3 SINE MIR -54 154 74 29 0 0 0 chr3 119716085 119716114 -107808464 + AT_rich Low_complexity Low_complexity 1 29 0 3787 174 34 35 chr3 119716733 119717581 -107806997 + L1MC2 LINE L1 5487 6333 -11 5824 127 67 77 chr3 119717691 119718639 -107805939 + Tigger3b DNA MER2_type 17 951 -2077 2133 69 4 0 chr3 119718639 119718901 -107805677 - AluSp SINE Alu -50 263 1 5824 127 67 77 chr3 119718901 119719179 -107805399 + Tigger3b DNA MER2_type 951 1230 -1 2267 103 0 0 chr3 119720515 119720815 -107803763 - AluSg SINE Alu -10 300 1 722 256 0 6 chr3 119720850 119721010 -107803568 + MER69 DNA AcHobo 209 367 -859 1657 172 39 44 chr3 119721011 119721418 -107803160 + L1MA9 LINE L1 5874 6278 -34 483 309 58 16 chr3 119721449 119721640 -107802938 + MER69 DNA AcHobo 373 571 -655 584 254 23 6 chr3 119721641 119721814 -107802764 + MER69 DNA AcHobo 2351 2526 0 2283 104 3 0 chr3 119721954 119722263 -107802315 + AluSg SINE Alu 1 310 0 208 283 71 50 chr3 119723208 119723307 -107801271 - L2 LINE L2 -32 3281 3181 233 321 12 24 chr3 119723346 119723430 -107801148 - MIR3 SINE MIR -26 182 100 351 234 207 9 chr3 119723602 119723713 -107800865 - L2 LINE L2 0 3272 3140 289 167 0 37 chr3 119724198 119724252 -107800326 - L2 LINE L2 0 3313 3262 25 0 0 0 chr3 119724796 119724821 -107799757 + AT_rich Low_complexity Low_complexity 1 25 0 2335 63 0 38 chr3 119725254 119725571 -107799007 + AluY SINE Alu 1 305 -6 26 50 0 0 chr3 119725699 119725739 -107798839 + AT_rich Low_complexity Low_complexity 1 40 0 308 331 36 36 chr3 119725963 119726102 -107798476 + L2 LINE L2 3164 3302 -11 242 304 76 13 chr3 119726353 119726432 -107798146 + MIR SINE MIR 22 105 -157 21 36 0 0 chr3 119727036 119727064 -107797514 + AT_rich Low_complexity Low_complexity 1 28 0 405 58 0 0 chr3 119727562 119727614 -107796964 + (CA)n Simple_repeat Simple_repeat 1 52 0 533 373 89 38 chr3 119727710 119728777 -107795801 + L2 LINE L2 1837 2957 -357 21 0 0 0 chr3 119729473 119729494 -107795084 + AT_rich Low_complexity Low_complexity 1 21 0 378 365 18 30 chr3 119730085 119730252 -107794326 + L2 LINE L2 3101 3265 -7 2158 81 13 7 chr3 119731793 119732073 -107792505 - MER4E LTR ERV1 -479 300 16 2202 85 13 7 chr3 119732073 119732380 -107792198 + AluY SINE Alu 1 309 -2 2158 81 13 7 chr3 119732380 119732397 -107792181 - MER4E LTR ERV1 -763 16 1 733 273 16 0 chr3 119732527 119732710 -107791868 - MER5A DNA MER1_type 0 189 4 619 186 0 0 chr3 119735256 119735358 -107789220 + MER44D DNA MER2_type 10 381 -228 1016 186 155 41 chr3 119736325 119736616 -107787962 - MLT2D LTR ERVL 0 414 91 22 0 0 0 chr3 119736965 119736987 -107787591 + AT_rich Low_complexity Low_complexity 1 22 0 416 209 0 12 chr3 119737106 119737192 -107787386 + MER20 DNA MER1_type 1 85 -134 949 197 11 6 chr3 119737241 119737419 -107787159 + FRAM SINE Alu 1 174 -2 249 135 0 0 chr3 119737429 119737466 -107787112 + MER20 DNA MER1_type 178 214 -5 1206 227 24 3 chr3 119737530 119737825 -107786753 + AluSc SINE Alu 5 305 -4 1455 35 0 0 chr3 119737847 119738017 -107786561 - MER4E LTR ERV1 -9 757 588 294 143 0 0 chr3 119738308 119738357 -107786221 + (CA)n Simple_repeat Simple_repeat 2 50 0 238 282 77 0 chr3 119740152 119740230 -107784348 - L2 LINE L2 -5 3267 3184 2251 66 3 3 chr3 119740525 119740827 -107783751 + AluY SINE Alu 1 302 -9 201 319 160 0 chr3 119741040 119741134 -107783444 + MIR SINE MIR 48 156 -106 1278 318 166 12 chr3 119741177 119741938 -107782640 + L2 LINE L2 2019 2896 -418 888 219 17 6 chr3 119742103 119742281 -107782297 - MER58A DNA MER1_type 0 224 45 359 288 93 43 chr3 119742346 119742485 -107782093 + L2 LINE L2 3168 3313 0 1066 226 0 9 chr3 119742764 119742985 -107781593 + MER20 DNA MER1_type 1 219 0 414 39 0 0 chr3 119743706 119743758 -107780820 + (TG)n Simple_repeat Simple_repeat 2 53 0 327 338 110 48 chr3 119743908 119744455 -107780123 + L2 LINE L2 2039 2619 -695 226 329 139 6 chr3 119744461 119744619 -107779959 + L2 LINE L2 2731 2909 -405 1598 124 109 4 chr3 119744677 119744960 -107779618 - AluSx SINE Alu 0 310 1 282 333 0 11 chr3 119745213 119745303 -107779275 + L2 LINE L2 3225 3313 0 970 276 83 22 chr3 119747976 119748264 -107776314 - L2 LINE L2 -468 2846 2530 1403 169 69 48 chr3 119748264 119748596 -107775982 - MER44D DNA MER2_type 0 609 1 970 276 83 22 chr3 119748596 119748669 -107775909 - L2 LINE L2 -784 2530 2463 2263 86 28 0 chr3 119748897 119749188 -107775390 + AluSp SINE Alu 1 299 -14 903 242 77 86 chr3 119751333 119751849 -107772729 - MLT1J LTR MaLR -4 611 1 21 0 0 0 chr3 119751864 119751885 -107772693 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr3 119751981 119752012 -107772566 + (CA)n Simple_repeat Simple_repeat 1 31 0 26 0 0 0 chr3 119752662 119752688 -107771890 + AT_rich Low_complexity Low_complexity 1 26 0 233 260 78 13 chr3 119752692 119752769 -107771809 - MIR3 SINE MIR -5 203 122 2248 121 0 0 chr3 119753530 119753835 -107770743 + AluSq SINE Alu 1 305 -8 412 199 309 7 chr3 119754201 119754337 -107770241 - MER5B DNA MER1_type -1 177 1 328 370 64 15 chr3 119754372 119754575 -107770003 - L2 LINE L2 -820 2494 2282 1641 172 3 14 chr3 119754843 119755134 -107769444 + AluJo SINE Alu 1 288 -24 683 165 0 0 chr3 119755401 119755510 -107769068 + MER7A DNA MER2_type 1 107 -239 21 0 0 0 chr3 119757572 119757593 -107766985 + AT_rich Low_complexity Low_complexity 1 21 0 230 214 14 14 chr3 119757837 119757907 -107766671 + (TA)n Simple_repeat Simple_repeat 2 71 0 370 361 53 16 chr3 119758157 119758401 -107766177 - L3 LINE CR1 -193 1384 1132 729 21 0 0 chr3 119758504 119758597 -107765981 - AluYa5/8 SINE Alu -4 307 215 627 276 78 37 chr3 119760070 119760287 -107764291 - MIR SINE MIR -19 243 18 887 207 25 5 chr3 119760502 119760700 -107763878 + MER3 DNA MER1_type 8 209 0 21 0 0 0 chr3 119760974 119760995 -107763583 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr3 119761906 119761927 -107762651 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 448 306 129 0 chr3 119762099 119762292 -107762286 + MIR SINE MIR 44 261 -1 1259 167 109 67 chr3 119762525 119762957 -107761621 - LTR7 LTR ERV1 0 450 1 2031 100 52 3 chr3 119763396 119763686 -107760892 - AluY SINE Alu -7 304 1 31 76 0 0 chr3 119763859 119763925 -107760653 + AT_rich Low_complexity Low_complexity 1 66 0 356 329 115 39 chr3 119764396 119764831 -107759747 + MLT1J LTR MaLR 44 511 0 22 0 0 0 chr3 119765364 119765386 -107759192 + AT_rich Low_complexity Low_complexity 1 22 0 225 293 98 16 chr3 119765516 119765639 -107758939 + MIR SINE MIR 106 238 -24 1978 221 45 37 chr3 119765991 119766553 -107758025 - L1ME1 LINE L1 -5 6161 5596 2048 178 33 2 chr3 119766562 119766955 -107757623 - L1MC3 LINE L1 -7 7778 7374 2573 252 60 58 chr3 119766982 119767352 -107757226 - L1MCa LINE L1 -3887 2858 2490 2131 133 3 0 chr3 119767352 119767661 -107756917 - AluSx SINE Alu 0 312 3 2573 252 60 58 chr3 119767661 119769684 -107754894 - L1MCa LINE L1 -4255 2490 482 545 299 12 6 chr3 119769733 119769900 -107754678 - L1MCa LINE L1 -5761 284 117 281 246 0 15 chr3 119769908 119769973 -107754605 - L1MCa LINE L1 -6344 220 157 * 6914 237 53 49 chr3 119769972 119770703 -107753875 - L1ME LINE L1 -564 5602 4875 2027 137 30 27 chr3 119770703 119771076 -107753502 - THE1C LTR MaLR 0 375 2 6914 237 53 49 chr3 119771076 119771233 -107753345 - L1ME LINE L1 -1291 4875 4720 2028 164 0 0 chr3 119771233 119771544 -107753034 - AluSx SINE Alu -1 311 1 6914 237 53 49 chr3 119771544 119773527 -107751051 - L1ME LINE L1 -1446 4720 2709 25 31 0 0 chr3 119773644 119773676 -107750902 + AT_rich Low_complexity Low_complexity 1 32 0 475 346 69 43 chr3 119774227 119774530 -107750048 + MLT1J2 LTR MaLR 83 393 -57 2191 90 30 7 chr3 119774646 119774947 -107749631 - AluSg SINE Alu -2 308 1 208 241 0 19 chr3 119775560 119775614 -107748964 + (CATA)n Simple_repeat Simple_repeat 3 55 0 22 56 0 0 chr3 119775912 119775948 -107748630 + AT_rich Low_complexity Low_complexity 1 36 0 351 273 11 23 chr3 119776781 119776869 -107747709 - L2 LINE L2 0 3272 3186 25 83 0 0 chr3 119777891 119777951 -107746627 + AT_rich Low_complexity Low_complexity 1 60 0 1720 147 29 0 chr3 119778802 119779081 -107745497 + L1PB4 LINE L1 5867 6153 -3 27 29 0 0 chr3 119779476 119779510 -107745068 + AT_rich Low_complexity Low_complexity 1 34 0 1562 172 7 32 chr3 119779699 119780007 -107744571 + AluJb SINE Alu 3 302 -10 2244 88 16 0 chr3 119780863 119781170 -107743408 - AluSx SINE Alu 0 312 1 1949 136 9 22 chr3 119781970 119782286 -107742292 - AluSx SINE Alu 0 312 1 2308 119 16 26 chr3 119782398 119782777 -107741801 + THE1C LTR MaLR 1 375 0 3722 147 107 5 chr3 119783228 119783883 -107740695 + MER50 LTR ERV1 1 722 -12 260 343 133 28 chr3 119784843 119785024 -107739554 - MIR3 SINE MIR -6 202 3 21 0 0 0 chr3 119786025 119786046 -107738532 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 119787035 119787056 -107737522 + AT_rich Low_complexity Low_complexity 1 21 0 2243 107 0 0 chr3 119787185 119787493 -107737085 - AluSg SINE Alu 0 310 3 2301 92 11 20 chr3 119787587 119787944 -107736634 - L1MA1 LINE L1 0 6302 5949 1596 69 9 0 chr3 119788032 119788249 -107736329 - L1MA1 LINE L1 -355 5947 5729 24 0 0 0 chr3 119788939 119788963 -107735615 + AT_rich Low_complexity Low_complexity 1 24 0 920 346 97 53 chr3 119789426 119790999 -107733579 - L2 LINE L2 -635 2679 1037 279 0 0 0 chr3 119791646 119791677 -107732901 + (TG)n Simple_repeat Simple_repeat 2 32 0 657 288 108 33 chr3 119792228 119792247 -107732331 + MIR SINE MIR 5 21 -241 1569 171 78 9 chr3 119792247 119792568 -107732010 + MER61A LTR ERV1 1 343 0 657 288 108 33 chr3 119792568 119792788 -107731790 + MIR SINE MIR 21 262 0 2452 73 0 0 chr3 119793264 119793565 -107731013 + AluY SINE Alu 3 303 -8 2197 140 33 6 chr3 119793968 119794333 -107730245 + THE1C LTR MaLR 1 375 0 12690 242 44 15 chr3 119794450 119795801 -107728777 - L1 LINE L1 -824 6741 5431 194 0 39 0 chr3 119795801 119795827 -107728751 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2073 117 0 3 chr3 119795829 119796120 -107728458 - AluSg SINE Alu -18 292 3 12690 242 44 15 chr3 119796120 119799083 -107725495 - L1 LINE L1 -2134 5431 2283 1048 101 27 48 chr3 119799104 119799292 -107725286 - L1PA10 LINE L1 -1 6167 5984 899 115 0 0 chr3 119799392 119799522 -107725056 - L1PA10 LINE L1 -196 5972 5843 1787 307 52 21 chr3 119799535 119800308 -107724270 - L1M3b LINE L1 -4865 1416 581 1022 305 128 19 chr3 119800363 119801002 -107723576 - L1M3b LINE L1 -5520 761 53 1782 157 10 20 chr3 119802266 119802572 -107722006 + AluSq SINE Alu 1 303 -10 202 188 0 29 chr3 119802672 119802741 -107721837 + GA-rich Low_complexity Low_complexity 2 68 0 334 251 100 71 chr3 119802806 119802926 -107721652 + L1MEd LINE L1 817 932 -5187 2103 121 0 3 chr3 119802926 119803224 -107721354 + AluSx SINE Alu 1 297 -15 334 251 100 71 chr3 119803224 119803453 -107721125 + L1MEd LINE L1 932 1176 -4943 312 335 62 6 chr3 119803998 119804177 -107720401 - L1M4 LINE L1 -763 5383 5195 425 253 162 0 chr3 119804766 119804920 -107719658 - MIR SINE MIR -39 223 45 24 53 0 0 chr3 119804966 119805004 -107719574 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr3 119805401 119805422 -107719156 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 119806215 119806236 -107718342 + AT_rich Low_complexity Low_complexity 1 21 0 297 291 256 5 chr3 119806474 119806677 -107717901 + MER102b DNA MER1_type 87 340 -1 3904 195 15 3 chr3 119806967 119807691 -107716887 + MER44D DNA MER2_type 1 605 0 2483 42 0 13 chr3 119808157 119808465 -107716113 - AluY SINE Alu -7 304 1 22 0 0 0 chr3 119809262 119809284 -107715294 + AT_rich Low_complexity Low_complexity 1 22 0 462 283 92 6 chr3 119809351 119809524 -107715054 - MIR SINE MIR -11 251 64 2219 99 20 0 chr3 119810964 119811258 -107713320 + AluSx SINE Alu 1 300 -12 739 302 118 31 chr3 119811574 119812152 -107712426 + L2 LINE L2 2692 3312 -1 243 326 12 0 chr3 119812352 119812438 -107712140 + MIR3 SINE MIR 90 176 -32 24 0 0 0 chr3 119814353 119814377 -107710201 + AT_rich Low_complexity Low_complexity 1 24 0 2525 114 6 3 chr3 119814771 119815122 -107709456 - THE1B LTR MaLR -12 352 1 328 285 11 38 chr3 119815757 119815796 -107708782 - L1ME4a LINE L1 -235 5886 5847 1247 207 71 71 chr3 119815796 119816192 -107708386 + MSTD LTR MaLR 1 396 0 328 285 11 38 chr3 119816192 119816338 -107708240 - L1ME4a LINE L1 -274 5847 5706 2369 83 0 0 chr3 119818520 119818820 -107705758 - AluSp SINE Alu -13 300 1 220 329 13 13 chr3 119819101 119819177 -107705401 + L2 LINE L2 3098 3173 -99 2552 37 0 7 chr3 119819184 119819484 -107705094 - AluY SINE Alu -10 301 4 2337 98 0 0 chr3 119820122 119820428 -107704150 - AluSc SINE Alu -3 306 1 237 286 29 0 chr3 119820694 119820764 -107703814 + CT-rich Low_complexity Low_complexity 4 75 0 26 0 0 0 chr3 119820822 119820848 -107703730 + AT_rich Low_complexity Low_complexity 1 26 0 2370 100 0 0 chr3 119821457 119821767 -107702811 + AluSx SINE Alu 1 310 -2 2071 129 3 35 chr3 119821782 119822099 -107702479 + AluSq SINE Alu 1 307 -6 312 286 134 17 chr3 119822231 119822350 -107702228 + MIR SINE MIR 32 164 -98 220 326 47 0 chr3 119822506 119822592 -107701986 - MER91B DNA MER1_type -11 179 90 214 324 59 59 chr3 119822625 119822727 -107701851 - MER91A DNA MER1_type -80 116 15 24 0 0 0 chr3 119823002 119823026 -107701552 + AT_rich Low_complexity Low_complexity 1 24 0 233 318 37 9 chr3 119823345 119823452 -107701126 + MLT1L LTR MaLR 503 612 -3 350 367 98 40 chr3 119823619 119824286 -107700292 - L3 LINE CR1 -618 959 255 734 317 4 38 chr3 119824617 119824882 -107699696 + MIR SINE MIR 3 258 -4 488 289 40 27 chr3 119826608 119826757 -107697821 - MER5A DNA MER1_type -37 152 2 5466 117 0 5 chr3 119827561 119828345 -107696233 + LTR17 LTR ERV1 1 780 0 1923 194 15 20 chr3 119828395 119828787 -107695791 - MLT1B LTR MaLR 0 390 1 373 321 62 19 chr3 119829255 119829417 -107695161 - MIR SINE MIR -13 249 81 602 235 18 95 chr3 119829431 119829678 -107694900 - L1ME1 LINE L1 -5 6161 5925 545 192 16 32 chr3 119829753 119829878 -107694700 - L1MEc LINE L1 -6231 165 43 700 126 0 27 chr3 119830271 119830382 -107694196 + AluJo SINE Alu 121 228 -84 2165 117 13 0 chr3 119830952 119831252 -107693326 + AluSg SINE Alu 1 304 -6 2267 101 3 16 chr3 119831264 119831570 -107693008 + AluSp SINE Alu 1 302 -11 315 306 65 0 chr3 119831891 119831999 -107692579 + L2 LINE L2 3199 3313 0 394 307 49 63 chr3 119832017 119832304 -107692274 + L2 LINE L2 2835 3117 -155 2262 123 24 19 chr3 119832682 119833055 -107691523 - THE1C LTR MaLR 0 375 1 4107 123 5 8 chr3 119833060 119833661 -107690917 - THE1C-int LTR MaLR -7 1573 975 2579 111 18 20 chr3 119833672 119834070 -107690508 - THE1C-int LTR MaLR -1183 397 1 2273 136 19 19 chr3 119834070 119834445 -107690133 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr3 119834689 119834710 -107689868 + AT_rich Low_complexity Low_complexity 1 21 0 236 108 62 31 chr3 119834839 119834904 -107689674 + (TA)n Simple_repeat Simple_repeat 2 68 0 2427 66 0 7 chr3 119834961 119835265 -107689313 + AluY SINE Alu 1 302 -9 610 285 49 22 chr3 119835602 119835869 -107688709 + L1MA9 LINE L1 6010 6283 -29 1827 172 49 3 chr3 119837151 119837500 -107687078 + MLT1A1 LTR MaLR 1 365 0 23 33 0 0 chr3 119838240 119838270 -107686308 + AT_rich Low_complexity Low_complexity 1 30 0 240 341 14 49 chr3 119838835 119838978 -107685600 - L2 LINE L2 -285 2987 2852 289 213 150 63 chr3 119839367 119839494 -107685084 - L2 LINE L2 -5 3308 3171 398 307 193 13 chr3 119839636 119839786 -107684792 - L3 LINE CR1 -29 1548 1426 183 42 0 0 chr3 119839786 119839810 -107684768 + (TAA)n Simple_repeat Simple_repeat 1 24 0 398 307 193 13 chr3 119839810 119839887 -107684691 - L3 LINE CR1 -151 1426 1280 2253 167 38 0 chr3 119840851 119841246 -107683332 - LTR57 LTR ERVL -1 410 1 228 193 145 60 chr3 119841964 119842047 -107682531 - MIR SINE MIR 0 262 173 512 248 28 9 chr3 119842093 119842202 -107682376 + MER5A DNA MER1_type 2 112 -77 247 293 40 0 chr3 119842645 119842720 -107681858 + L2 LINE L2 3223 3300 -13 3508 159 21 5 chr3 119843978 119844605 -107679973 - L1MA6 LINE L1 -2 6298 5662 207 65 65 0 chr3 119844612 119844658 -107679920 + (TA)n Simple_repeat Simple_repeat 2 50 0 572 54 90 6 chr3 119844669 119844835 -107679743 + (TA)n Simple_repeat Simple_repeat 1 180 0 3702 169 15 17 chr3 119844836 119845836 -107678742 - L1MA6 LINE L1 -651 5649 4646 2582 136 6 17 chr3 119845832 119846309 -107678269 + L1MA6 LINE L1 4190 4661 -1485 * 31 44 0 0 chr3 119847532 119847577 -107677001 + AT_rich Low_complexity Low_complexity 1 45 0 575 295 38 24 chr3 119847797 119848007 -107676571 + L2 LINE L2 523 735 -2579 202 289 72 0 chr3 119848019 119848102 -107676476 + L2 LINE L2 877 965 -2349 2182 98 17 3 chr3 119848714 119849010 -107675568 + AluSx SINE Alu 3 302 -10 3573 308 124 33 chr3 119849333 119851415 -107673163 + L2 LINE L2 1013 3286 -27 2183 82 7 10 chr3 119851554 119851873 -107672705 - AluSp SINE Alu 0 313 1 6518 132 8 12 chr3 119852045 119853421 -107671157 - L1MA2 LINE L1 -41 7682 6314 312 76 0 121 chr3 119853418 119853484 -107671094 + L1 LINE L1 4553 4610 -1536 * 5023 175 31 24 chr3 119853479 119855566 -107669012 - L1MA2 LINE L1 -2767 4798 2699 261 0 0 0 chr3 119855566 119855595 -107668983 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 7430 24 2 0 chr3 119855595 119856465 -107668113 - L1PA3 LINE L1 -10 6145 5274 * 14556 28 0 1 chr3 119856457 119858181 -107666397 + L1PA3 LINE L1 3531 5253 -893 13953 160 93 4 chr3 119858182 119860656 -107663922 - L1MA2 LINE L1 -4859 2706 11 261 0 0 0 chr3 119860745 119860774 -107663804 + (CAA)n Simple_repeat Simple_repeat 2 30 0 1798 194 9 12 chr3 119860781 119861122 -107663456 - MLT1A1 LTR MaLR -25 340 1 958 67 36 15 chr3 119861579 119861774 -107662804 + SVA Other Other 596 794 -592 1541 115 33 67 chr3 119861787 119862238 -107662340 + SVA Other Other 433 868 -518 6326 77 18 32 chr3 119862291 119863297 -107661281 + SVA Other Other 430 1421 0 295 266 129 0 chr3 119863437 119863576 -107661002 - LTR33 LTR ERVL -28 493 337 401 282 149 5 chr3 119863605 119863793 -107660785 - LTR33 LTR ERVL -246 275 61 667 175 26 0 chr3 119863794 119863908 -107660670 - LTR12 LTR ERV1 -234 480 364 328 185 0 0 chr3 119863919 119863984 -107660594 - LTR30 LTR ERV1 -102 620 556 556 129 31 93 chr3 119863984 119864192 -107660386 - LTR12 LTR ERV1 -425 289 33 25 31 0 0 chr3 119865628 119865660 -107658918 + AT_rich Low_complexity Low_complexity 1 32 0 191 330 82 0 chr3 119865916 119866013 -107658565 - MIR SINE MIR -66 142 38 299 216 102 34 chr3 119867825 119867913 -107656665 + MER70A LTR ERVL 355 448 -24 1936 278 112 34 chr3 119868016 119868926 -107655652 + HAL1 LINE L1 649 1487 -1020 6166 133 54 33 chr3 119868926 119870131 -107654447 - Tigger3b DNA MER2_type -1 1230 1 1936 278 112 34 chr3 119870131 119870878 -107653700 + HAL1 LINE L1 1487 2488 -19 22 0 0 0 chr3 119870922 119870944 -107653634 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr3 119871067 119871098 -107653480 + AT_rich Low_complexity Low_complexity 1 31 0 1791 265 98 57 chr3 119872740 119873175 -107651403 - HAL1 LINE L1 0 2507 2091 2435 73 0 0 chr3 119873175 119873477 -107651101 - AluY SINE Alu -9 302 1 1791 265 98 57 chr3 119873477 119874337 -107650241 - HAL1 LINE L1 -416 2091 1154 2323 166 38 18 chr3 119874337 119874789 -107649789 + LOR1b LTR ERV1 1 461 0 1791 265 98 57 chr3 119874789 119874825 -107649753 - HAL1 LINE L1 -1353 1154 1121 24231 139 7 15 chr3 119874851 119881254 -107643324 - L1PA8A LINE L1 -28 6418 5 600 271 55 80 chr3 119881267 119881816 -107642762 - HAL1 LINE L1 -1385 1122 588 1273 199 10 74 chr3 119882111 119882407 -107642171 - AluJo SINE Alu -12 300 24 413 353 38 0 chr3 119882431 119882697 -107641881 - HAL1 LINE L1 -2222 285 10 1877 129 14 10 chr3 119883236 119883530 -107641048 + AluSx SINE Alu 15 309 -3 22 35 0 0 chr3 119883896 119883925 -107640653 + AT_rich Low_complexity Low_complexity 1 29 0 248 309 60 0 chr3 119884175 119884259 -107640319 + L2 LINE L2 3225 3313 0 306 146 18 0 chr3 119884362 119884417 -107640161 - MER58B DNA MER1_type 0 341 286 827 243 47 73 chr3 119884480 119884822 -107639756 - MER58B DNA MER1_type 0 341 9 599 152 18 98 chr3 119885744 119885908 -107638670 + MLT1A1 LTR MaLR 1 151 -214 1040 102 30 0 chr3 119885917 119886155 -107638423 + CT-rich Low_complexity Low_complexity 1 245 0 239 250 157 0 chr3 119886175 119886283 -107638295 + MLT1A1 LTR MaLR 225 349 -25 192 40 0 0 chr3 119886283 119886308 -107638270 + (T)n Simple_repeat Simple_repeat 1 25 0 2270 99 7 3 chr3 119886468 119886770 -107637808 - AluSp SINE Alu -10 303 1 1894 65 8 27 chr3 119886791 119887051 -107637527 - SVA Other Other 0 1386 1132 1637 177 35 14 chr3 119887205 119887487 -107637091 - AluJo SINE Alu -24 288 1 1850 243 101 72 chr3 119887487 119888622 -107635956 - L1MDa LINE L1 -4960 1580 327 372 151 55 0 chr3 119888620 119888693 -107635885 - L1MDa LINE L1 -6448 92 16 * 185 32 0 65 chr3 119888701 119888732 -107635846 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 352 306 94 72 chr3 119889524 119889704 -107634874 - MIR3 SINE MIR -5 203 20 26 0 0 0 chr3 119890410 119890436 -107634142 + AT_rich Low_complexity Low_complexity 1 26 0 1642 267 69 20 chr3 119890792 119891283 -107633295 + LTR40a LTR ERVL 1 515 -4 1279 142 54 29 chr3 119891935 119892251 -107632327 + MER33 DNA MER1_type 1 324 0 227 272 0 87 chr3 119893340 119893370 -107631208 - MIR SINE MIR -148 114 83 1555 206 42 14 chr3 119893370 119893724 -107630854 + MLT1A1 LTR MaLR 2 365 0 227 272 0 87 chr3 119893724 119893796 -107630782 - MIR SINE MIR -179 83 21 366 280 6 54 chr3 119893919 119894087 -107630491 + CT-rich Low_complexity Low_complexity 1 160 0 403 299 32 32 chr3 119894267 119894424 -107630154 - MIR3 SINE MIR -4 204 48 280 313 97 28 chr3 119895072 119895248 -107629330 + MIR SINE MIR 73 260 -2 967 303 181 47 chr3 119897226 119898190 -107626388 + L2 LINE L2 1785 2877 -437 207 338 81 0 chr3 119898475 119898549 -107626029 + L2 LINE L2 3137 3216 -56 240 167 0 0 chr3 119898638 119898686 -107625892 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 259 241 0 38 chr3 119899017 119899096 -107625482 + L1ME LINE L1 5726 5801 -320 360 0 0 0 chr3 119900962 119901002 -107623576 + (TC)n Simple_repeat Simple_repeat 2 41 0 28 48 0 0 chr3 119901344 119901386 -107623192 + AT_rich Low_complexity Low_complexity 1 42 0 357 317 83 0 chr3 119902154 119902274 -107622304 + MIR3 SINE MIR 65 194 -14 213 264 0 0 chr3 119902436 119902489 -107622089 + MIR3 SINE MIR 150 202 -6 338 256 24 24 chr3 119903360 119903442 -107621136 + MIR SINE MIR 32 113 -95 9546 191 61 5 chr3 119904349 119906327 -107618251 + L1PA13 LINE L1 1 2090 -4697 4336 166 16 7 chr3 119906304 119906506 -107618072 + L1P LINE L1 5137 5336 -1461 * 185 0 40 0 chr3 119906506 119906531 -107618047 + (CAAA)n Simple_repeat Simple_repeat 1 26 0 4336 166 16 7 chr3 119906531 119907225 -107617353 + L1P LINE L1 5336 6041 -756 1846 112 6 112 chr3 119907279 119907628 -107616950 + AluSx SINE Alu 1 312 0 24 0 0 0 chr3 119909115 119909139 -107615439 + AT_rich Low_complexity Low_complexity 1 24 0 186 297 135 27 chr3 119909245 119909356 -107615222 - L2 LINE L2 -2057 1257 1135 357 127 0 0 chr3 119909616 119909671 -107614907 - MER92C LTR ERV1 0 554 500 367 280 13 0 chr3 119909811 119909920 -107614658 - MER92B LTR ERV1 -438 116 1 277 244 2 0 chr3 119910524 119910612 -107613966 - MER31-int LTR ERV1 -468 4468 4399 437 154 0 0 chr3 119910755 119910820 -107613758 + AluJ/FLAM SINE Alu 1 65 -247 22 0 0 0 chr3 119911501 119911523 -107613055 + AT_rich Low_complexity Low_complexity 1 22 0 324 211 0 0 chr3 119911758 119911829 -107612749 - MER92C LTR ERV1 0 554 484 371 338 51 45 chr3 119912425 119912594 -107611984 + L2 LINE L2 2945 3118 -195 2289 165 28 37 chr3 119912594 119913055 -107611523 + MSTB2 LTR MaLR 1 457 0 371 338 51 45 chr3 119913055 119913196 -107611382 + L2 LINE L2 3118 3257 -56 189 107 0 0 chr3 119913209 119913237 -107611341 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 260 321 74 10 chr3 119913244 119913352 -107611226 - MIR3 SINE MIR -91 117 5 22 56 0 0 chr3 119913466 119913502 -107611076 + AT_rich Low_complexity Low_complexity 1 36 0 24 67 0 0 chr3 119914350 119914395 -107610183 + AT_rich Low_complexity Low_complexity 1 45 0 16838 96 3 9 chr3 119914526 119917787 -107606791 - L1PA7 LINE L1 -3 6151 2905 5838 104 81 112 chr3 119917787 119919376 -107605202 + pTR5 LTR ERV1 744 2438 0 10887 118 1 7 chr3 119919379 119921045 -107603533 - L1PA7 LINE L1 -3237 2909 1254 934 226 55 14 chr3 119921067 119921284 -107603294 - MLT1A1 LTR MaLR -138 227 2 1087 278 112 11 chr3 119921288 119921637 -107602941 + MLT1F LTR MaLR 159 542 0 2361 112 0 0 chr3 119922092 119922404 -107602174 - AluSq SINE Alu -1 312 1 2369 92 0 0 chr3 119923100 119923395 -107601183 + AluSc SINE Alu 3 297 -12 1207 248 98 67 chr3 119924647 119924808 -107599770 - L2 LINE L2 0 3313 3158 317 80 0 20 chr3 119924808 119924858 -107599720 + (CA)n Simple_repeat Simple_repeat 2 50 0 1207 248 98 67 chr3 119924858 119925588 -107598990 - L2 LINE L2 -155 3158 2397 695 281 122 30 chr3 119925885 119926188 -107598390 - LTR33 LTR ERVL -165 356 26 229 230 27 40 chr3 119926222 119926296 -107598282 + MLT1L LTR MaLR 397 469 -146 1857 224 36 28 chr3 119926352 119926644 -107597934 - L1MD3 LINE L1 -10 7985 7686 2200 118 0 3 chr3 119926644 119926941 -107597637 - AluSq SINE Alu -17 296 1 1857 224 36 28 chr3 119926941 119927144 -107597434 - L1MD3 LINE L1 -309 7686 7486 396 307 101 18 chr3 119927826 119928044 -107596534 - L3 LINE CR1 -880 697 462 351 299 24 24 chr3 119928270 119928397 -107596181 - MLT1I LTR MaLR -231 178 52 1071 259 73 6 chr3 119928532 119928849 -107595729 - MER58B DNA MER1_type -3 338 1 358 290 58 39 chr3 119929083 119929238 -107595340 - MIR SINE MIR -56 206 49 2191 125 0 0 chr3 119929423 119929734 -107594844 + AluSx SINE Alu 2 312 0 389 280 93 64 chr3 119931200 119931621 -107592957 + L1MC4a LINE L1 5576 6008 -113 903 150 6 124 chr3 119932109 119932452 -107592126 - L1MA9 LINE L1 -221 5950 5675 7996 211 9 6 chr3 119932453 119934464 -107590114 + L1 LINE L1 1852 3857 -2289 203 214 0 0 chr3 119936497 119936539 -107588039 + L2 LINE L2 3272 3313 0 1972 196 8 0 chr3 119937697 119938059 -107586519 + MLT1A1 LTR MaLR 1 365 0 33 0 0 0 chr3 119938327 119938360 -107586218 + AT_rich Low_complexity Low_complexity 1 33 0 624 256 91 84 chr3 119939024 119939562 -107585016 - MER34 LTR ERV1 0 542 1 1031 238 56 16 chr3 119940013 119940336 -107584242 + MER58D DNA MER1_type 47 382 -4 223 322 76 25 chr3 119940913 119941031 -107583547 + MIR3 SINE MIR 76 199 -9 302 295 54 36 chr3 119941205 119941317 -107583261 - MIR SINE MIR -97 165 52 1419 187 78 22 chr3 119941752 119942073 -107582505 - MER44D DNA MER2_type 0 609 1 22 0 0 0 chr3 119942510 119942532 -107582046 + AT_rich Low_complexity Low_complexity 1 22 0 397 339 156 5 chr3 119943304 119943490 -107581088 - MIR SINE MIR -17 245 32 533 249 210 10 chr3 119943573 119943778 -107580800 + MIR SINE MIR 17 262 0 377 296 113 15 chr3 119944356 119944559 -107580019 + MIR SINE MIR 39 261 -1 519 95 14 0 chr3 119945530 119945604 -107578974 + MADE1 DNA Mariner 1 75 -5 645 241 35 41 chr3 119945939 119946109 -107578469 + MER5B DNA MER1_type 2 170 -8 313 339 78 57 chr3 119947480 119948081 -107576497 + L2 LINE L2 2301 2914 -400 28 48 0 0 chr3 119948358 119948400 -107576178 + AT_rich Low_complexity Low_complexity 1 42 0 1999 172 32 36 chr3 119948753 119949302 -107575276 + MLT2A2 LTR ERVL 1 542 -12 284 397 32 16 chr3 119949590 119949779 -107574799 + MIR SINE MIR 70 261 -1 2307 109 0 0 chr3 119950889 119951193 -107573385 + AluSx SINE Alu 1 304 -8 530 300 40 7 chr3 119951194 119951344 -107573234 + MIR SINE MIR 26 180 -82 616 153 28 21 chr3 119952465 119952609 -107571969 - MER53 DNA DNA -3 186 42 656 177 52 68 chr3 119952653 119952845 -107571733 - MER53 DNA DNA 0 189 1 30 0 0 0 chr3 119953867 119953897 -107570681 + AT_rich Low_complexity Low_complexity 1 30 0 189 0 0 0 chr3 119954037 119954058 -107570520 + (T)n Simple_repeat Simple_repeat 1 21 0 388 182 0 0 chr3 119954284 119954350 -107570228 - MLT1A1 LTR MaLR 0 365 300 243 103 0 0 chr3 119954636 119954675 -107569903 + (TC)n Simple_repeat Simple_repeat 1 39 0 303 175 0 0 chr3 119955295 119955352 -107569226 + (TG)n Simple_repeat Simple_repeat 1 57 0 272 318 127 28 chr3 119955762 119956014 -107568564 + L2 LINE L2 1931 2207 -1107 26 74 0 0 chr3 119956879 119956933 -107567645 + AT_rich Low_complexity Low_complexity 1 54 0 213 39 0 0 chr3 119958233 119958259 -107566319 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 2165 96 7 0 chr3 119958261 119958542 -107566036 - AluSp SINE Alu -30 283 1 4166 145 7 17 chr3 119958569 119959266 -107565312 - L1PA16 LINE L1 -1 6165 5476 7832 188 5 3 chr3 119959627 119959989 -107564589 - L1PB1 LINE L1 -1 6150 5790 252 0 0 0 chr3 119959989 119960017 -107564561 + (TA)n Simple_repeat Simple_repeat 2 29 0 7832 188 5 3 chr3 119960017 119962205 -107562373 - L1PB1 LINE L1 -361 5790 3595 1607 80 118 0 chr3 119962309 119962546 -107562032 - L1P4 LINE L1 -348 5815 5551 283 301 173 6 chr3 119962557 119962713 -107561865 - MIR SINE MIR -24 238 57 242 59 29 0 chr3 119964005 119964039 -107560539 - MSTA LTR MaLR -393 35 1 297 0 0 0 chr3 119964135 119964168 -107560410 + (CA)n Simple_repeat Simple_repeat 2 34 0 200 292 0 0 chr3 119964179 119964244 -107560334 + T-rich Low_complexity Low_complexity 1 65 0 2171 116 0 3 chr3 119964963 119965266 -107559312 - AluSx SINE Alu -10 302 1 3845 23 0 14 chr3 119965287 119965718 -107558860 - SVA Other Other 0 1386 962 5604 71 22 57 chr3 119965830 119967684 -107556894 - SVA Other Other -520 1151 57 870 38 0 0 chr3 119967684 119967790 -107556788 + (GGGAGA)n Simple_repeat Simple_repeat 5 110 0 216 111 0 0 chr3 119968131 119968167 -107556411 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 1111 133 158 161 chr3 119968499 119968690 -107555888 - MSTA LTR MaLR 0 428 238 399 41 0 0 chr3 119968690 119968739 -107555839 + (CA)n Simple_repeat Simple_repeat 2 50 0 1111 133 158 161 chr3 119968739 119968976 -107555602 - MSTA LTR MaLR -190 238 1 262 329 67 27 chr3 119970194 119970343 -107554235 + L2 LINE L2 3159 3313 0 257 75 25 0 chr3 119970702 119970742 -107553836 + (TTCC)n Simple_repeat Simple_repeat 4 44 0 283 192 23 29 chr3 119970939 119971111 -107553467 + CT-rich Low_complexity Low_complexity 1 171 0 990 93 11 27 chr3 119971112 119971295 -107553283 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1366 195 8 0 chr3 119971300 119971546 -107553032 - AluJb SINE Alu -64 248 1 233 276 117 41 chr3 119971803 119971948 -107552630 + MIR SINE MIR 30 185 -77 261 348 40 44 chr3 119972003 119972206 -107552372 - MIR SINE MIR -51 211 4 1449 128 0 25 chr3 119972943 119973178 -107551400 - L1PA13 LINE L1 -8 6155 5927 234 279 25 25 chr3 119974658 119974737 -107549841 - L1ME LINE L1 -523 5598 5520 250 313 0 0 chr3 119976025 119976092 -107548486 + GA-rich Low_complexity Low_complexity 2 68 0 1110 117 0 0 chr3 119976092 119976271 -107548307 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 500 229 139 0 chr3 119976488 119976632 -107547946 + MER3 DNA MER1_type 46 209 0 336 23 23 0 chr3 119976670 119976714 -107547864 + MADE1 DNA Mariner 1 45 -35 317 203 14 0 chr3 119978024 119978091 -107546487 - MER82 DNA MER2_type -3 650 583 877 169 19 0 chr3 119978091 119978245 -107546333 - MLT1A1 LTR MaLR 0 365 209 2053 214 37 0 chr3 119978251 119978658 -107545920 - MER72 LTR ERV1 -3 719 298 25 0 0 0 chr3 119978660 119978685 -107545893 + AT_rich Low_complexity Low_complexity 1 25 0 770 86 9 0 chr3 119978685 119978801 -107545777 - LTR9B LTR ERV1 -84 560 444 720 221 47 75 chr3 119978934 119978997 -107545581 - MER72 LTR ERV1 -515 207 144 2248 101 3 20 chr3 119978997 119979303 -107545275 + AluSg SINE Alu 1 301 -9 720 221 47 75 chr3 119979303 119979452 -107545126 - MER72 LTR ERV1 -578 144 1 1353 126 0 23 chr3 119979452 119979667 -107544911 - MLT1A1 LTR MaLR -153 212 3 * 1385 221 65 3 chr3 119979667 119979973 -107544605 - MER82 DNA MER2_type -65 588 264 2777 94 27 96 chr3 119980073 119980817 -107543761 - SVA Other Other -518 868 393 249 362 0 0 chr3 119981752 119981846 -107542732 + L3 LINE CR1 661 754 -823 248 333 44 56 chr3 119981961 119982231 -107542347 + L3 LINE CR1 766 1032 -545 340 342 90 34 chr3 119982277 119982511 -107542067 + L1MC/D LINE L1 5371 5617 -2191 348 341 33 22 chr3 119982618 119982866 -107541712 + MLT1I LTR MaLR 128 406 -3 481 350 15 0 chr3 119982879 119983079 -107541499 + L1MC/D LINE L1 5614 5816 -1992 893 254 116 59 chr3 119983783 119984138 -107540440 + LTR16A1 LTR ERVL 4 378 -79 402 85 0 0 chr3 119984192 119984251 -107540327 + (TG)n Simple_repeat Simple_repeat 2 60 0 1583 169 44 25 chr3 119984392 119984753 -107539825 - L1MEc LINE L1 -4430 2110 1743 1805 138 0 0 chr3 119984764 119985045 -107539533 - AluSx SINE Alu 0 311 31 3999 167 9 35 chr3 119985045 119985828 -107538750 - LTR1 LTR ERV1 0 785 23 477 222 37 7 chr3 119985910 119986045 -107538533 - L1MEc LINE L1 -4828 1712 1574 315 0 0 0 chr3 119986387 119986422 -107538156 + (TG)n Simple_repeat Simple_repeat 1 35 0 2701 176 50 6 chr3 119986429 119986924 -107537654 + MLT2B1 LTR ERVL 4 520 0 381 43 0 0 chr3 119986927 119986974 -107537604 + (TG)n Simple_repeat Simple_repeat 2 48 0 27 62 0 0 chr3 119987314 119987362 -107537216 + AT_rich Low_complexity Low_complexity 1 48 0 306 87 0 0 chr3 119987362 119987408 -107537170 + (TG)n Simple_repeat Simple_repeat 1 46 0 778 104 0 0 chr3 119989137 119989243 -107535335 - MSTA LTR MaLR 0 428 323 31 26 0 0 chr3 119989538 119989576 -107535002 + AT_rich Low_complexity Low_complexity 1 38 0 342 45 0 0 chr3 119989594 119989638 -107534940 + (T)n Simple_repeat Simple_repeat 1 44 0 201 308 143 22 chr3 119989864 119989955 -107534623 + MIR SINE MIR 30 131 -131 2293 100 3 3 chr3 119990035 119990346 -107534232 + AluSx SINE Alu 1 311 -1 333 321 37 58 chr3 119991831 119992074 -107532504 + HAL1b LINE L1 168 405 -943 1146 206 22 104 chr3 119992215 119992387 -107532191 - L1M4 LINE L1 -1256 4890 4768 581 206 136 13 chr3 119992387 119992542 -107532036 + MER96 DNA MER1_type 2 175 0 1146 206 22 104 chr3 119992542 119992772 -107531806 - L1M4 LINE L1 -1378 4768 4521 1206 237 58 65 chr3 119992811 119992987 -107531591 - L1M4 LINE L1 -1822 4324 4148 324 0 0 0 chr3 119992987 119993023 -107531555 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 1206 237 58 65 chr3 119993023 119993398 -107531180 - L1M4 LINE L1 -1998 4148 3777 3485 183 43 31 chr3 119993412 119994942 -107529636 + L1PA16 LINE L1 4653 6157 -9 243 276 179 25 chr3 119995011 119995207 -107529371 - L1M4 LINE L1 -2415 3731 3506 943 253 38 62 chr3 119995222 119995622 -107528956 - L1MEc LINE L1 -5970 751 362 184 98 24 24 chr3 119995661 119995702 -107528876 + (TA)n Simple_repeat Simple_repeat 1 41 0 508 330 38 24 chr3 119995875 119996084 -107528494 - L3 LINE CR1 -478 1099 888 1158 242 121 87 chr3 119996187 119996453 -107528125 + MLT1E1 LTR MaLR 67 323 -331 252 0 0 0 chr3 119996453 119996481 -107528097 + (TG)n Simple_repeat Simple_repeat 2 29 0 1158 242 121 87 chr3 119996481 119996799 -107527779 + MLT1E1 LTR MaLR 323 649 -5 1088 265 133 40 chr3 119996833 119997925 -107526653 - HAL1 LINE L1 -256 2251 1007 22 0 0 0 chr3 119997939 119997961 -107526617 + AT_rich Low_complexity Low_complexity 1 22 0 26 64 0 0 chr3 119998471 119998518 -107526060 + AT_rich Low_complexity Low_complexity 1 47 0 1301 147 13 4 chr3 119998542 119998780 -107525798 - L1PA13 LINE L1 0 6163 5924 1266 143 153 20 chr3 119998880 119999167 -107525411 + MER61C LTR ERV1 139 434 0 405 273 0 53 chr3 119999402 119999534 -107525044 + L2 LINE L2 3171 3295 -18 233 281 31 21 chr3 119999759 119999855 -107524723 - L1ME LINE L1 -437 5684 5588 28 29 0 0 chr3 119999965 120000000 -107524578 + AT_rich Low_complexity Low_complexity 1 35 0 794 236 136 47 chr3 120000526 120000865 -107523713 - L1MC4 LINE L1 -148 7894 7526 2264 262 57 77 chr3 120000866 120001912 -107522666 + L2 LINE L2 1824 2848 -466 570 315 29 12 chr3 120002107 120002348 -107522230 + L2 LINE L2 2383 2627 -687 1740 178 0 7 chr3 120002460 120002753 -107521825 + AluSx SINE Alu 1 291 -21 186 273 104 0 chr3 120002768 120002845 -107521733 + L2 LINE L2 2698 2782 -532 852 197 6 17 chr3 120003018 120003196 -107521382 - MLT1A1 LTR MaLR -189 176 1 371 251 166 11 chr3 120003357 120003532 -107521046 - L1ME LINE L1 -385 5736 5535 228 336 52 0 chr3 120003828 120003944 -107520634 + L2 LINE L2 3192 3313 0 23 0 0 0 chr3 120005445 120005468 -107519110 + AT_rich Low_complexity Low_complexity 1 23 0 388 338 59 0 chr3 120007192 120007328 -107517250 - MIR SINE MIR 0 262 119 325 299 95 27 chr3 120008150 120008297 -107516281 + L1ME4a LINE L1 5962 6118 -3 29 90 0 0 chr3 120008410 120008488 -107516090 + AT_rich Low_complexity Low_complexity 1 78 0 308 243 69 21 chr3 120008538 120008682 -107515896 - HAL1 LINE L1 -100 2407 2257 2053 240 69 30 chr3 120009029 120009595 -107514983 - MLT1E LTR MaLR -4 589 2 296 263 30 10 chr3 120009756 120009855 -107514723 - HAL1 LINE L1 -568 1939 1839 897 266 9 118 chr3 120009935 120010374 -107514204 - L2 LINE L2 -5 3308 2918 425 296 51 74 chr3 120010592 120010849 -107513729 + HAL1b LINE L1 663 913 -435 239 289 0 52 chr3 120011648 120011745 -107512833 - MLT1K LTR MaLR 0 588 497 22 56 0 0 chr3 120012359 120012395 -107512183 + AT_rich Low_complexity Low_complexity 1 36 0 327 192 0 64 chr3 120014745 120014801 -107509777 + Tigger2 DNA MER2_type 1 52 -2666 2212 109 0 3 chr3 120014801 120015113 -107509465 - AluSx SINE Alu -1 311 1 327 192 0 64 chr3 120015113 120015134 -107509444 + Tigger2 DNA MER2_type 52 73 -2645 775 256 0 6 chr3 120015167 120015335 -107509243 - MER8 DNA MER2_type -62 177 11 964 323 69 72 chr3 120015549 120016691 -107507887 - L2 LINE L2 -5 3267 2134 3418 99 32 2 chr3 120016711 120017235 -107507343 + L1MA2 LINE L1 5765 6304 0 24 0 0 0 chr3 120017235 120017259 -107507319 + AT_rich Low_complexity Low_complexity 1 24 0 454 43 29 14 chr3 120017293 120017362 -107507216 + (TTTC)n Simple_repeat Simple_repeat 3 72 0 232 190 70 110 chr3 120017364 120017464 -107507114 + L2 LINE L2 2292 2387 -927 214 263 111 10 chr3 120017459 120017558 -107507020 + MIR SINE MIR 125 233 -29 * 271 167 19 0 chr3 120018059 120018113 -107506465 + L1MB8 LINE L1 5552 5606 -568 * 862 177 24 129 chr3 120018100 120018272 -107506306 + L1MB8 LINE L1 5911 6100 -78 1716 187 10 74 chr3 120018272 120018689 -107505889 - MLT1B LTR MaLR 0 390 1 862 177 24 129 chr3 120018689 120018745 -107505833 + L1MB8 LINE L1 6100 6104 -74 1537 70 22 22 chr3 120018745 120018974 -107505604 - L1PA10 LINE L1 0 6168 5940 862 177 24 129 chr3 120018974 120019038 -107505540 + L1MB8 LINE L1 6104 6173 -5 22 56 0 0 chr3 120019040 120019076 -107505502 + AT_rich Low_complexity Low_complexity 1 36 0 19024 131 15 21 chr3 120019127 120022388 -107502190 + L1P LINE L1 593 3833 -2313 1930 80 0 4 chr3 120023146 120023395 -107501183 - AluSg SINE Alu -32 278 31 22 0 0 0 chr3 120024043 120024065 -107500513 + AT_rich Low_complexity Low_complexity 1 22 0 331 144 0 7 chr3 120026086 120026156 -107498422 - AluJo SINE Alu -3 299 246 739 223 5 60 chr3 120026156 120026228 -107498350 - AluJo SINE Alu -138 174 100 2181 155 80 10 chr3 120026228 120026628 -107497950 - MSTA LTR MaLR 0 428 1 739 223 5 60 chr3 120026628 120026739 -107497839 - AluJo SINE Alu -212 100 1 465 282 224 8 chr3 120027584 120027829 -107496749 + L3 LINE CR1 782 1079 -498 9418 146 12 31 chr3 120027841 120028590 -107495988 - L1MA1 LINE L1 0 7721 6959 2169 107 7 7 chr3 120028590 120028899 -107495679 - AluSc SINE Alu 0 309 1 9418 146 12 31 chr3 120028899 120030997 -107493581 - L1MA1 LINE L1 -762 6959 4929 13022 193 43 7 chr3 120031000 120033478 -107491100 - L1MA1 LINE L1 -4981 2584 17 490 357 37 17 chr3 120033496 120033796 -107490782 + L3 LINE CR1 1070 1375 -202 27 0 0 0 chr3 120034525 120034552 -107490026 + AT_rich Low_complexity Low_complexity 1 27 0 311 0 0 25 chr3 120034953 120034993 -107489585 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 784 78 0 0 chr3 120034993 120035095 -107489483 - L1PA8 LINE L1 -16 6156 6055 7072 230 57 36 chr3 120037692 120039483 -107485095 - L1MC1 LINE L1 0 6613 4860 1959 58 8 0 chr3 120039483 120039723 -107484855 - AluY SINE Alu -1 310 69 7072 230 57 36 chr3 120039723 120041558 -107483020 - L1MC1 LINE L1 -1753 4860 2894 697 167 25 80 chr3 120041575 120041686 -107482892 - Tigger1 DNA MER2_type 0 2418 2317 2133 107 0 25 chr3 120041686 120042004 -107482574 + AluSg SINE Alu 1 310 0 697 167 25 80 chr3 120042004 120042054 -107482524 - Tigger1 DNA MER2_type -101 2317 2266 4324 145 28 19 chr3 120042054 120042812 -107481766 + L1MA4A LINE L1 5495 6259 -44 11181 134 45 4 chr3 120042820 120043186 -107481392 - Tigger1 DNA MER2_type -154 2264 1914 2769 170 43 4 chr3 120043186 120043738 -107480840 - L1PA16 LINE L1 -1 6165 5592 11181 134 45 4 chr3 120043738 120045213 -107479365 - Tigger1 DNA MER2_type -504 1914 349 23 33 0 0 chr3 120045592 120045622 -107478956 + AT_rich Low_complexity Low_complexity 1 30 0 255 326 41 56 chr3 120045845 120045951 -107478627 + MER70-int LTR ERVL 4409 4515 -508 272 312 11 0 chr3 120045951 120046044 -107478534 + MER57-int LTR ERV1 6555 6648 -889 * 1802 288 23 21 chr3 120046013 120046670 -107477908 + MER57-int LTR ERV1 4214 4871 0 255 326 41 56 chr3 120046044 120046115 -107478463 + MER70-int LTR ERVL 4515 4674 -349 * 2984 181 115 61 chr3 120047211 120047977 -107476601 - L1MC1 LINE L1 -5599 827 21 208 325 79 32 chr3 120047981 120048107 -107476471 - MIR SINE MIR -115 147 16 2238 91 0 7 chr3 120048520 120048816 -107475762 + AluY SINE Alu 1 294 -17 2394 124 67 20 chr3 120048841 120049244 -107475334 + MSTC LTR MaLR 3 424 -4 363 339 71 24 chr3 120050668 120050836 -107473742 - L2 LINE L2 -1 3271 3096 1707 241 110 19 chr3 120050882 120051354 -107473224 - MLT2B1 LTR ERVL -5 515 1 239 164 16 66 chr3 120051357 120051418 -107473160 - L2 LINE L2 -217 3055 2998 1672 167 77 20 chr3 120051549 120051902 -107472676 - THE1C LTR MaLR -2 373 1 1425 256 67 31 chr3 120052635 120053251 -107471327 - L1M4 LINE L1 -3381 2765 2128 1714 284 69 22 chr3 120053254 120053852 -107470726 + MLT1E2 LTR MaLR 1 626 0 1087 264 85 121 chr3 120053852 120054953 -107469625 + MLT1E2-int LTR MaLR 1 1062 -309 248 231 0 0 chr3 120054953 120055018 -107469560 - L1PA16 LINE L1 -713 5438 5374 654 249 167 65 chr3 120055054 120055810 -107468768 - L1M4 LINE L1 -827 5319 4641 2161 90 7 0 chr3 120055810 120056098 -107468480 + AluY SINE Alu 1 290 -21 654 249 167 65 chr3 120056098 120056168 -107468410 - L1M4 LINE L1 -1505 4641 4580 1732 129 91 0 chr3 120056168 120056432 -107468146 + AluSx SINE Alu 1 288 -24 654 249 167 65 chr3 120056432 120056508 -107468070 - L1M4 LINE L1 -1566 4580 4324 222 325 50 0 chr3 120056979 120057059 -107467519 + L2 LINE L2 3186 3269 -3 585 316 35 70 chr3 120057388 120057758 -107466820 - MLT1J LTR MaLR -154 357 1 273 273 80 0 chr3 120057781 120057869 -107466709 + L2 LINE L2 3174 3268 -4 2353 97 0 0 chr3 120057964 120058272 -107466306 + AluSg SINE Alu 1 308 -2 1555 186 5 99 chr3 120058283 120058686 -107465892 + MLT1A1 LTR MaLR 1 365 0 1847 156 0 56 chr3 120059102 120059461 -107465117 - MER44D DNA MER2_type 0 609 1 196 333 0 0 chr3 120059815 120059860 -107464718 - L2 LINE L2 -16 3256 3212 527 197 148 28 chr3 120060483 120060625 -107463953 - MER3 DNA MER1_type -4 205 47 727 341 125 16 chr3 120061664 120062160 -107462418 - L2 LINE L2 -2728 586 37 404 306 74 21 chr3 120064050 120064427 -107460151 - L1MC/D LINE L1 -368 5777 5379 240 333 53 22 chr3 120064614 120064935 -107459643 - L1MC/D LINE L1 -1001 5128 4798 1914 179 48 15 chr3 120065047 120065443 -107459135 - MSTB1 LTR MaLR -23 409 1 315 270 26 0 chr3 120065444 120065559 -107459019 - L1MC/D LINE L1 -2440 3689 3572 268 327 24 20 chr3 120066057 120066305 -107458273 - L1MC/D LINE L1 -3031 3098 2850 362 301 121 42 chr3 120066543 120066922 -107457656 - L1MC/D LINE L1 -3528 2601 2193 2563 33 0 3 chr3 120066958 120067261 -107457317 + AluY SINE Alu 1 302 -9 468 267 81 58 chr3 120067934 120068569 -107456009 - L1MEd LINE L1 -860 1630 902 274 253 259 32 chr3 120069826 120069984 -107454594 + MIR SINE MIR 63 256 -6 423 244 33 83 chr3 120070620 120070800 -107453778 - MIR SINE MIR -40 222 52 21 57 0 0 chr3 120071376 120071411 -107453167 + AT_rich Low_complexity Low_complexity 1 35 0 1113 211 49 11 chr3 120071842 120072107 -107452471 + ORSL DNA AcHobo 1 275 0 582 301 20 25 chr3 120072320 120072519 -107452059 - MIR SINE MIR -25 237 40 207 244 0 0 chr3 120074395 120074440 -107450138 - MIR SINE MIR -103 105 61 1882 127 13 48 chr3 120074610 120074924 -107449654 - AluJb SINE Alu -5 307 5 21 0 0 0 chr3 120075552 120075573 -107449005 + AT_rich Low_complexity Low_complexity 1 21 0 1699 166 86 6 chr3 120075978 120076316 -107448262 - MLT1A1 LTR MaLR 0 365 1 278 333 10 0 chr3 120077239 120077341 -107447237 + (CTA)n Simple_repeat Simple_repeat 2 104 0 289 260 14 0 chr3 120077716 120077789 -107446789 + L2 LINE L2 3240 3313 0 948 98 15 0 chr3 120078106 120078238 -107446340 - AluSg/x SINE Alu -14 296 163 385 244 41 32 chr3 120078327 120078452 -107446126 - L1ME1 LINE L1 -3 6331 6047 487 211 53 0 chr3 120078452 120078547 -107446031 + AluJ/FLAM SINE Alu 1 100 -212 1975 212 49 15 chr3 120078547 120079014 -107445564 - L1ME1 LINE L1 -122 6044 5562 200 206 0 0 chr3 120079487 120079521 -107445057 + A-rich Low_complexity Low_complexity 4 37 0 22 0 0 0 chr3 120080995 120081017 -107443561 + AT_rich Low_complexity Low_complexity 1 22 0 807 234 63 10 chr3 120081017 120081222 -107443356 + MER58A DNA MER1_type 1 216 -8 2270 215 26 17 chr3 120082339 120082870 -107441708 - L1ME2 LINE L1 -1 6163 5628 1143 251 69 20 chr3 120083613 120083960 -107440618 - LTR40a LTR ERVL -21 498 135 754 324 56 5 chr3 120084090 120084306 -107440272 - ERVL LTR ERVL -1915 3081 2855 487 278 29 62 chr3 120084399 120084608 -107439970 + HERV16 LTR ERVL 2248 2449 -2547 1199 284 84 8 chr3 120084737 120085128 -107439450 - ERVL LTR ERVL -2920 2076 1656 489 340 123 24 chr3 120085168 120085541 -107439037 - L1MEc LINE L1 -5953 443 34 558 265 60 30 chr3 120086225 120086391 -107438187 + MIR SINE MIR 92 262 0 1982 132 50 34 chr3 120086436 120086793 -107437785 - THE1C LTR MaLR -12 363 1 1854 264 33 49 chr3 120087817 120088389 -107436189 - MER21B LTR ERV1 -209 654 92 180 77 0 0 chr3 120089953 120089979 -107434599 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 759 299 90 17 chr3 120091348 120091703 -107432875 + MLT1I LTR MaLR 22 402 -7 525 333 62 19 chr3 120092151 120092472 -107432106 - ERVL LTR ERVL -1584 4180 3846 678 324 20 17 chr3 120092523 120092822 -107431756 - ERVL LTR ERVL -4049 1715 1416 24 0 0 0 chr3 120093015 120093039 -107431539 + AT_rich Low_complexity Low_complexity 1 24 0 2736 158 11 2 chr3 120093039 120093507 -107431071 - L1PA16 LINE L1 -9 6157 5686 1202 261 32 77 chr3 120094214 120094746 -107429832 - LTR55 LTR ERV -34 514 7 1700 166 3 3 chr3 120095979 120096283 -107428295 + AluJo SINE Alu 1 304 0 817 288 113 3 chr3 120096693 120096985 -107427593 - MER5C DNA MER1_type 0 324 1 185 231 248 41 chr3 120099053 120099174 -107425404 + L3 LINE CR1 1421 1566 -11 209 171 0 0 chr3 120100617 120100652 -107423926 - MIR SINE MIR -111 151 117 349 211 0 0 chr3 120102652 120102723 -107421855 - MER92C LTR ERV1 0 554 484 764 195 36 1 chr3 120102804 120103083 -107421495 + MER93b LTR ERV1 53 373 0 297 336 66 8 chr3 120103646 120103768 -107420810 - L3 LINE CR1 -168 1409 1281 1163 104 49 0 chr3 120104007 120104170 -107420408 - AluSg/x SINE Alu -13 297 127 543 340 75 43 chr3 120104180 120104860 -107419718 + L1M4 LINE L1 3782 4483 -1663 1190 270 74 9 chr3 120105092 120105511 -107419067 - L1ME1 LINE L1 -75 6091 5646 1280 274 45 93 chr3 120105514 120106161 -107418417 - MER21B LTR ERV1 -150 713 98 292 309 7 58 chr3 120106134 120106273 -107418305 - MER77 LTR ERV1 -408 197 66 * 640 272 114 24 chr3 120106282 120106580 -107417998 - L1ME1 LINE L1 -520 5646 5322 8308 106 14 9 chr3 120106580 120108612 -107415966 - L1PA7 LINE L1 -3 6151 4113 574 338 17 22 chr3 120158989 120159220 -107365358 + MIR SINE MIR 31 260 -2 250 317 24 32 chr3 120160728 120160851 -107363727 - L2 LINE L2 -1 3312 3191 397 241 29 22 chr3 120160887 120161024 -107363554 - MER69 DNA AcHobo -13 2513 2376 1271 241 77 18 chr3 120161514 120161850 -107362728 + MER69 DNA AcHobo 3 358 -2168 6643 172 28 29 chr3 120162059 120163278 -107361300 + L1 LINE L1 12 1229 -6336 3059 169 34 3 chr3 120163276 120163890 -107360688 + L1 LINE L1 5509 6141 -1424 * 1909 228 27 10 chr3 120164289 120164693 -107359885 - L1PA13 LINE L1 -6370 417 7 245 29 29 0 chr3 120164703 120164737 -107359841 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 1726 170 11 0 chr3 120164737 120165013 -107359565 - AluSx SINE Alu -33 279 1 313 340 95 17 chr3 120165408 120165828 -107358750 - L1ME1 LINE L1 -1637 4509 4057 825 259 21 0 chr3 120165829 120166018 -107358560 - MLT1A1 LTR MaLR -2 363 171 531 250 58 52 chr3 120166035 120166207 -107358371 - MLT1A1 LTR MaLR -172 193 21 789 144 22 21 chr3 120166511 120166745 -107357833 + CT-rich Low_complexity Low_complexity 1 234 0 577 173 18 48 chr3 120166780 120167052 -107357526 + CT-rich Low_complexity Low_complexity 1 264 0 1509 141 32 67 chr3 120167285 120167597 -107356981 - AluJo SINE Alu -10 302 2 230 317 17 0 chr3 120167773 120167833 -107356745 - L2 LINE L2 -12 3260 3200 435 68 0 0 chr3 120168184 120168243 -107356335 + (TG)n Simple_repeat Simple_repeat 1 59 0 2397 55 3 0 chr3 120168370 120168663 -107355915 - AluY SINE Alu -17 294 1 2354 47 30 7 chr3 120170396 120170694 -107353884 - AluY SINE Alu 0 311 7 32 43 0 0 chr3 120170916 120170962 -107353616 + AT_rich Low_complexity Low_complexity 1 46 0 271 293 68 44 chr3 120171029 120171367 -107353211 - L1ME4a LINE L1 -31 6090 5745 1348 146 17 34 chr3 120171481 120171714 -107352864 - AluJo SINE Alu 0 312 84 192 335 79 37 chr3 120172379 120172543 -107352035 + L3 LINE CR1 1306 1476 -101 421 286 0 32 chr3 120173379 120173505 -107351073 - L2 LINE L2 -2 3311 3190 25 95 0 0 chr3 120174237 120174311 -107350267 + AT_rich Low_complexity Low_complexity 1 74 0 24 32 0 0 chr3 120175159 120175190 -107349388 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 120175324 120175345 -107349233 + AT_rich Low_complexity Low_complexity 1 21 0 184 329 42 49 chr3 120175415 120175558 -107349020 - MIR SINE MIR -73 189 48 227 221 0 29 chr3 120175662 120175730 -107348848 - LTR66 LTR ERVL -177 433 368 1557 165 103 19 chr3 120175848 120176169 -107348409 - MLT2C1 LTR ERVL -40 357 10 26 0 0 0 chr3 120176443 120176469 -107348109 + GC_rich Low_complexity Low_complexity 1 26 0 804 76 0 34 chr3 120176737 120176855 -107347723 + MER61-int LTR ERV1 4669 4782 -435 5802 168 26 4 chr3 120176859 120178582 -107345996 + L1PA16 LINE L1 4400 6157 -9 614 295 142 11 chr3 120178592 120178853 -107345725 - MLT2F LTR ERVL -366 297 3 470 407 45 5 chr3 120178861 120179318 -107345260 + L2 LINE L2 2629 3101 -171 778 230 20 7 chr3 120179467 120179619 -107344959 - MER58A DNA MER1_type 0 155 2 274 330 34 0 chr3 120179638 120179726 -107344852 + L2 LINE L2 3223 3313 0 204 375 12 0 chr3 120180208 120180288 -107344290 - L2 LINE L2 -229 3084 3004 386 239 184 26 chr3 120180380 120180685 -107343893 - L1MC4 LINE L1 -32 8010 7658 303 188 0 0 chr3 120181941 120181989 -107342589 - LTR16A1 LTR ERVL 0 457 410 442 270 20 40 chr3 120182013 120182161 -107342417 + L1ME3A LINE L1 6003 6147 -23 24 0 0 0 chr3 120182240 120182264 -107342314 + AT_rich Low_complexity Low_complexity 1 24 0 24 32 0 0 chr3 120182595 120182626 -107341952 + AT_rich Low_complexity Low_complexity 1 31 0 233 234 16 31 chr3 120183943 120184007 -107340571 + G-rich Low_complexity Low_complexity 2 64 0 2172 206 19 13 chr3 120184608 120185078 -107339500 - L1MB5 LINE L1 -7 6167 5695 180 370 58 43 chr3 120185119 120185257 -107339321 - L2 LINE L2 0 3272 3133 685 304 114 61 chr3 120185581 120186072 -107338506 - LTR33 LTR ERVL -4 517 1 1112 148 27 0 chr3 120187325 120187686 -107336892 + L1MA5A LINE L1 5814 6292 -5 21 36 0 0 chr3 120187686 120187714 -107336864 + AT_rich Low_complexity Low_complexity 1 28 0 225 103 0 88 chr3 120188244 120188312 -107336266 + (TAAAA)n Simple_repeat Simple_repeat 4 65 0 197 250 71 0 chr3 120188361 120188417 -107336161 + MIR3 SINE MIR 149 208 0 282 324 19 19 chr3 120188549 120188657 -107335921 + L2 LINE L2 3206 3313 0 185 365 0 0 chr3 120189540 120189592 -107334986 - L2 LINE L2 -11 3261 3210 9711 113 31 29 chr3 120190393 120190457 -107334121 - MER61A-int LTR ERV1 -2012 4816 4754 5435 43 4 13 chr3 120190457 120191160 -107333418 - L1PA4 LINE L1 -1 6154 5458 9711 113 31 29 chr3 120191160 120192347 -107332231 - MER61A-int LTR ERV1 -2074 4754 3571 339 25 0 0 chr3 120192347 120192387 -107332191 + (CA)n Simple_repeat Simple_repeat 2 41 0 9711 113 31 29 chr3 120192387 120192813 -107331765 - MER61A-int LTR ERV1 -3257 3571 3147 1613 85 9 5 chr3 120192813 120193025 -107331553 - AluSg/x SINE Alu -11 299 87 9711 113 31 29 chr3 120193025 120193076 -107331502 - MER61A-int LTR ERV1 -3681 3147 1655 315 87 22 0 chr3 120193117 120193163 -107331415 - MER61A-int LTR ERV1 -4440 777 731 1578 178 28 34 chr3 120193175 120193529 -107331049 - MER61A-int LTR ERV1 -4745 472 121 355 291 60 13 chr3 120193508 120193659 -107330919 - MER61A-int LTR ERV1 -5041 176 19 * 1493 160 64 67 chr3 120193676 120194019 -107330559 - MER61A LTR ERV1 -1 342 1 3136 214 19 56 chr3 120194027 120194923 -107329655 - L1 LINE L1 -2099 4047 3185 618 213 19 29 chr3 120195476 120195692 -107328886 - MER93b LTR ERV1 0 373 124 433 254 49 33 chr3 120196107 120196229 -107328349 - MER93b LTR ERV1 -236 137 14 321 68 0 0 chr3 120196568 120196612 -107327966 + (TG)n Simple_repeat Simple_repeat 2 45 0 1785 195 8 35 chr3 120196676 120197051 -107327527 - MLT1A1 LTR MaLR 0 365 1 244 314 107 6 chr3 120197875 120198034 -107326544 - MIR SINE MIR -6 256 82 2324 72 10 7 chr3 120198728 120199034 -107325544 - AluY SINE Alu -2 309 3 2213 167 6 0 chr3 120199479 120199833 -107324745 + L1PA14 LINE L1 197 552 -6235 11212 178 19 3 chr3 120199833 120202839 -107321739 + L1PA14 LINE L1 3744 6811 -1 301 336 0 8 chr3 120204902 120205027 -107319551 + (TA)n Simple_repeat Simple_repeat 2 125 0 1946 132 24 3 chr3 120205190 120205486 -107319092 + AluSx SINE Alu 1 302 -10 22 35 0 0 chr3 120205486 120205515 -107319063 + AT_rich Low_complexity Low_complexity 1 29 0 248 289 0 56 chr3 120206405 120206495 -107318083 - MIR3 SINE MIR -21 187 103 23 0 0 0 chr3 120207897 120207920 -107316658 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr3 120208099 120208126 -107316452 + AT_rich Low_complexity Low_complexity 1 27 0 315 349 66 56 chr3 120210037 120210555 -107314023 + L2 LINE L2 2715 3264 -8 212 267 0 0 chr3 120210600 120210645 -107313933 + (CATA)n Simple_repeat Simple_repeat 4 48 0 22 0 0 0 chr3 120211037 120211059 -107313519 + AT_rich Low_complexity Low_complexity 1 22 0 1612 157 184 16 chr3 120211412 120211776 -107312802 + MSTA LTR MaLR 4 428 0 2222 154 71 5 chr3 120211927 120212322 -107312256 + MSTB LTR MaLR 6 426 0 414 291 121 76 chr3 120212715 120213004 -107311574 - MLT1J2 LTR MaLR -14 436 135 204 219 0 0 chr3 120213088 120213129 -107311449 + C-rich Low_complexity Low_complexity 1 41 0 1993 122 33 33 chr3 120213249 120213611 -107310967 + L1MA2 LINE L1 5943 6304 0 1911 151 64 14 chr3 120214119 120214476 -107310102 - THE1C LTR MaLR 0 375 1 194 336 93 19 chr3 120215561 120215668 -107308910 + MIR SINE MIR 32 146 -62 361 256 124 16 chr3 120215707 120215836 -107308742 - MIR SINE MIR 0 262 120 223 329 151 7 chr3 120216179 120216325 -107308253 + MIR SINE MIR 65 231 -31 1974 104 0 19 chr3 120216588 120216895 -107307683 - L1P4 LINE L1 -448 5718 5418 272 407 42 8 chr3 120217102 120217343 -107307235 + L2 LINE L2 2811 3059 -213 192 382 98 0 chr3 120217528 120217630 -107306948 + L2 LINE L2 3136 3247 -25 1576 153 72 67 chr3 120217655 120218028 -107306550 - THE1C LTR MaLR 0 375 1 653 133 0 9 chr3 120218034 120218147 -107306431 + L1PA15 LINE L1 6053 6164 -1 2200 47 0 0 chr3 120218200 120218453 -107306125 + AluY SINE Alu 47 299 -12 1888 142 3 23 chr3 120218552 120218854 -107305724 + AluSx SINE Alu 1 296 -16 24 0 0 0 chr3 120218935 120218959 -107305619 + AT_rich Low_complexity Low_complexity 1 24 0 1101 202 82 80 chr3 120219852 120220204 -107304374 - MLT1F LTR MaLR 0 542 190 860 228 5 25 chr3 120220296 120220512 -107304066 - MLT1F1 LTR MaLR -330 212 2 255 203 0 0 chr3 120220605 120220664 -107303914 + CT-rich Low_complexity Low_complexity 2 60 0 271 417 28 28 chr3 120220771 120221025 -107303553 + L2 LINE L2 308 561 -2753 1611 256 87 20 chr3 120221648 120222140 -107302438 - MLT1E2 LTR MaLR -22 604 80 314 273 102 0 chr3 120222048 120222176 -107302402 - MLT2C1 LTR ERVL -209 188 48 * 5630 180 27 54 chr3 120222816 120222979 -107301599 - L1PA15-16 LINE L1 -4821 2028 1862 4134 125 17 3 chr3 120222979 120223617 -107300961 - L1PA15 LINE L1 -2 6163 5517 5630 180 27 54 chr3 120223617 120223765 -107300813 - L1PA15-16 LINE L1 -4987 1862 1712 2185 136 0 0 chr3 120223765 120224066 -107300512 - AluSx SINE Alu -11 301 1 5630 180 27 54 chr3 120224066 120224979 -107299599 - L1PA15-16 LINE L1 -5137 1712 836 6219 119 55 11 chr3 120225107 120225703 -107298875 - THE1-int LTR MaLR 0 1580 921 7123 54 28 0 chr3 120225703 120226576 -107298002 + MER11D LTR ERVK 1 897 0 6219 119 55 11 chr3 120226576 120226983 -107297595 - THE1-int LTR MaLR -659 921 533 530 97 74 8 chr3 120226989 120227111 -107297467 - HERVL LTR ERVL -1159 4329 4194 28 29 0 0 chr3 120227489 120227524 -107297054 + AT_rich Low_complexity Low_complexity 1 35 0 211 332 32 0 chr3 120228038 120228131 -107296447 + MIR SINE MIR 31 125 -103 430 315 7 14 chr3 120228296 120228439 -107296139 - L2 LINE L2 -4 3268 3127 322 291 10 0 chr3 120229926 120230029 -107294549 + (TA)n Simple_repeat Simple_repeat 1 104 0 531 314 57 14 chr3 120230065 120230415 -107294163 - L1MC4a LINE L1 -1934 5874 5510 23 0 0 0 chr3 120230687 120230710 -107293868 + GC_rich Low_complexity Low_complexity 1 23 0 303 352 81 61 chr3 120230730 120231275 -107293303 + L1M2 LINE L1 836 1391 -5458 222 139 23 23 chr3 120231813 120231856 -107292722 + GA-rich Low_complexity Low_complexity 4 46 0 937 311 51 0 chr3 120231859 120232190 -107292388 - LTR16A LTR ERVL -96 354 7 1048 276 47 58 chr3 120233118 120233582 -107290996 - LTR16B LTR ERVL -2 462 4 338 270 30 15 chr3 120234329 120234498 -107290080 + LTR16B LTR ERVL 209 450 -14 4915 221 24 18 chr3 120234981 120236897 -107287681 - L1PA15-16 LINE L1 -2916 3933 2004 2544 177 36 8 chr3 120237011 120237675 -107286903 - L1PA16 LINE L1 -310 5856 5174 307 356 32 27 chr3 120237983 120238171 -107286407 + L2 LINE L2 1860 2048 -1266 1546 182 39 31 chr3 120238693 120239051 -107285527 - MLT1A2 LTR MaLR -4 370 10 412 373 96 26 chr3 120239072 120239656 -107284922 + L2 LINE L2 2238 2862 -452 266 284 111 84 chr3 120240569 120240759 -107283819 + MIR SINE MIR 60 254 -8 4403 45 2 7 chr3 120240961 120241514 -107283064 + L1PA4 LINE L1 5603 6152 -3 288 242 55 55 chr3 120241941 120242069 -107282509 + L1ME4a LINE L1 5791 5918 -203 547 304 82 20 chr3 120242371 120242664 -107281914 + L1M4 LINE L1 4457 4767 -1379 1668 115 82 55 chr3 120243642 120244007 -107280571 - THE1C LTR MaLR 0 375 1 1212 195 43 45 chr3 120244059 120244467 -107280111 - LOR1-int LTR ERV1 -977 3959 3477 1349 198 16 16 chr3 120244482 120244740 -107279838 - AluJo SINE Alu -25 287 30 2301 98 0 0 chr3 120244769 120245065 -107279513 - AluSg SINE Alu -14 296 1 590 233 130 52 chr3 120245069 120245619 -107278959 - LOR1-int LTR ERV1 -1496 5167 2793 23 0 0 0 chr3 120245622 120245645 -107278933 + AT_rich Low_complexity Low_complexity 1 23 0 6106 177 28 69 chr3 120245645 120246168 -107278410 - L1MA3 LINE L1 0 6305 5762 2356 70 3 0 chr3 120246168 120246466 -107278112 - AluY SINE Alu -12 299 1 6106 177 28 69 chr3 120246466 120249280 -107275298 - L1MA3 LINE L1 -543 5762 3126 387 236 49 8 chr3 120249280 120249403 -107275175 - LOR1-int LTR ERV1 -2921 1950 1823 2934 211 56 29 chr3 120249791 120250699 -107273879 - LOR1-int LTR ERV1 -3136 1735 803 9438 212 94 6 chr3 120250736 120252610 -107271968 + L1PBa LINE L1 6 1713 -5149 2179 82 0 14 chr3 120252610 120252892 -107271686 + AluY SINE Alu 26 303 -8 9438 212 94 6 chr3 120252892 120254785 -107269793 + L1PBa LINE L1 1713 4099 -2763 2347 84 0 13 chr3 120255398 120255707 -107268871 + AluSq SINE Alu 1 305 -8 378 365 129 0 chr3 120255843 120256021 -107268557 + MIR SINE MIR 47 247 -15 1255 138 142 19 chr3 120256935 120257196 -107267382 + THE1B LTR MaLR 1 293 -71 182 371 0 0 chr3 120258165 120258227 -107266351 + L2 LINE L2 1545 1606 -1708 272 328 25 0 chr3 120261292 120261411 -107263167 + MER46C DNA MER2_type 191 312 -26 207 210 48 32 chr3 120262443 120262505 -107262073 - L3 LINE CR1 -53 1524 1462 253 149 64 0 chr3 120262510 120262557 -107262021 + MLT1A1 LTR MaLR 5 54 -336 * 3524 149 41 42 chr3 120262556 120263224 -107261354 + MER4D LTR ERV1 137 805 -67 1788 159 62 20 chr3 120263224 120263582 -107260996 - THE1C LTR MaLR -2 373 1 3524 149 41 42 chr3 120263582 120263650 -107260928 + MER4D LTR ERV1 805 872 0 416 181 12 0 chr3 120263650 120263733 -107260845 - MLT2C1 LTR ERVL -311 86 3 479 326 52 69 chr3 120263887 120264466 -107260112 + L1MEd LINE L1 655 1223 -4896 1915 198 20 0 chr3 120264511 120264869 -107259709 + MLT1A1 LTR MaLR 1 365 0 23 0 0 0 chr3 120265613 120265636 -107258942 + AT_rich Low_complexity Low_complexity 1 23 0 206 322 138 29 chr3 120265790 120266029 -107258549 - L2 LINE L2 -659 2655 2391 264 122 0 0 chr3 120266099 120266140 -107258438 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 206 207 35 0 chr3 120266244 120266302 -107258276 + T-rich Low_complexity Low_complexity 2 61 0 24 0 0 0 chr3 120267542 120267566 -107257012 + AT_rich Low_complexity Low_complexity 1 24 0 309 284 45 22 chr3 120267978 120268112 -107256466 + L2 LINE L2 3116 3252 -61 982 254 35 24 chr3 120268586 120268924 -107255654 + MLT1A1 LTR MaLR 24 365 0 4416 165 20 12 chr3 120268924 120269723 -107254855 + L1MC1 LINE L1 5511 6315 -18 30 83 0 0 chr3 120269746 120269818 -107254760 + AT_rich Low_complexity Low_complexity 1 72 0 394 191 21 0 chr3 120269826 120269920 -107254658 - MER96 DNA MER1_type? -79 96 1 226 64 0 43 chr3 120270320 120270367 -107254211 + (TTA)n Simple_repeat Simple_repeat 2 46 0 272 181 14 28 chr3 120270867 120270939 -107253639 + (TA)n Simple_repeat Simple_repeat 2 72 0 284 293 23 92 chr3 120271415 120271525 -107253053 + MIR SINE MIR 55 150 -112 2083 174 35 91 chr3 120271525 120272072 -107252506 + MLT2B1 LTR ERVL 1 516 -4 284 293 23 92 chr3 120272072 120272135 -107252443 + MIR SINE MIR 150 216 -46 * 559 244 87 75 chr3 120272117 120272371 -107252207 + MIR SINE MIR 6 262 0 252 0 0 0 chr3 120273165 120273193 -107251385 + (TTTTG)n Simple_repeat Simple_repeat 3 30 0 559 264 48 74 chr3 120273573 120273990 -107250588 + LTR37A LTR ERV1 21 426 0 191 352 70 0 chr3 120274198 120274269 -107250309 + L2 LINE L2 3178 3253 -19 309 292 101 39 chr3 120275448 120275626 -107248952 - MLT1K LTR MaLR -231 357 169 2435 107 0 0 chr3 120276620 120276930 -107247648 + AluSg SINE Alu 1 310 0 4454 172 41 9 chr3 120277418 120279172 -107245406 - L1PA15 LINE L1 -130 6035 4221 1437 204 32 32 chr3 120279660 120279945 -107244633 + AluJo SINE Alu 3 287 -25 249 151 0 0 chr3 120279948 120280001 -107244577 + GA-rich Low_complexity Low_complexity 2 54 0 313 371 42 14 chr3 120280181 120280324 -107244254 + L2 LINE L2 3125 3271 -1 212 167 0 0 chr3 120280356 120280392 -107244186 + (TAG)n Simple_repeat Simple_repeat 1 36 0 3060 162 40 12 chr3 120281104 120282031 -107242547 + L1M1 LINE L1 4711 5659 -646 202 200 0 0 chr3 120282382 120282427 -107242151 + G-rich Low_complexity Low_complexity 1 45 0 27 0 0 0 chr3 120282495 120282522 -107242056 + AT_rich Low_complexity Low_complexity 1 27 0 1299 237 71 11 chr3 120282936 120283370 -107241208 + MLT1C LTR MaLR 8 467 0 201 381 102 27 chr3 120283394 120283541 -107241037 + L2 LINE L2 3115 3272 0 266 188 17 60 chr3 120284207 120284324 -107240254 + C-rich Low_complexity Low_complexity 5 116 0 251 253 25 0 chr3 120284339 120284418 -107240160 + (CCCCG)n Simple_repeat Simple_repeat 2 82 0 366 224 40 72 chr3 120284547 120284699 -107239879 + L1M4 LINE L1 4435 4581 -1565 215 283 17 0 chr3 120284709 120284769 -107239809 - MIR SINE MIR -153 109 49 765 211 32 22 chr3 120285068 120285253 -107239325 - MER5A DNA MER1_type -2 187 1 21 36 0 0 chr3 120285552 120285580 -107238998 + AT_rich Low_complexity Low_complexity 1 28 0 1290 224 58 0 chr3 120285584 120285861 -107238717 - AluJo SINE Alu -19 293 1 2131 100 0 4 chr3 120286021 120286301 -107238277 + AluY SINE Alu 1 279 -32 203 79 26 0 chr3 120286303 120286341 -107238237 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 209 329 25 25 chr3 120286645 120286724 -107237854 - MIR SINE MIR -22 240 162 795 184 41 0 chr3 120286724 120286871 -107237707 - MER20 DNA MER1_type 0 219 67 185 321 18 0 chr3 120286939 120286995 -107237583 - MIR SINE MIR -160 102 46 228 35 0 0 chr3 120287127 120287156 -107237422 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 266 191 58 29 chr3 120287807 120287980 -107236598 + (CACAC)n Simple_repeat Simple_repeat 1 178 0 * 275 207 9 27 chr3 120287913 120288111 -107236467 + (CAA)n Simple_repeat Simple_repeat 1 194 0 189 0 0 0 chr3 120288327 120288348 -107236230 + (A)n Simple_repeat Simple_repeat 1 21 0 207 156 44 0 chr3 120289388 120289433 -107235145 + (TTTG)n Simple_repeat Simple_repeat 3 49 0 2189 100 0 14 chr3 120290850 120291141 -107233437 - AluSg SINE Alu -21 289 3 1509 273 42 42 chr3 120291214 120291804 -107232774 + MLT1G LTR MaLR 1 590 0 242 185 12 62 chr3 120292032 120292113 -107232465 + (TCTCTG)n Simple_repeat Simple_repeat 2 78 0 737 169 122 55 chr3 120292591 120292845 -107231733 - ORSL DNA AcHobo 0 275 5 470 151 21 65 chr3 120293658 120293751 -107230827 + L2 LINE L2 3224 3312 -1 348 83 0 0 chr3 120294430 120294478 -107230100 + (CA)n Simple_repeat Simple_repeat 1 48 0 209 318 54 62 chr3 120294913 120295042 -107229536 + MER5B DNA MER1_type 50 177 -1 1522 180 151 9 chr3 120298069 120298414 -107226164 + MSTA LTR MaLR 23 416 -12 249 83 0 0 chr3 120298424 120298460 -107226118 + (CAAAA)n Simple_repeat Simple_repeat 3 38 0 5107 244 21 10 chr3 120298463 120299965 -107224613 - L1P LINE L1 -2192 3954 2437 635 345 69 6 chr3 120300085 120300553 -107224025 - L1PA13 LINE L1 -5347 1440 805 380 0 0 0 chr3 120300565 120300609 -107223969 + THE1B LTR MaLR 1 44 -320 7846 81 7 1 chr3 120300619 120301696 -107222882 + HERVL LTR ERVL 2603 3685 -1969 338 189 11 56 chr3 120301841 120302021 -107222557 + GA-rich Low_complexity Low_complexity 2 173 0 1576 209 170 7 chr3 120302450 120302856 -107221722 + MLT2B1 LTR ERVL 1 472 -48 26 30 0 0 chr3 120303739 120303772 -107220806 + AT_rich Low_complexity Low_complexity 1 33 0 488 352 55 16 chr3 120303900 120304210 -107220368 + L2 LINE L2 2851 3172 -141 221 120 0 40 chr3 120305355 120305405 -107219173 + (TAA)n Simple_repeat Simple_repeat 2 49 0 26 0 0 0 chr3 120305866 120305892 -107218686 + AT_rich Low_complexity Low_complexity 1 26 0 271 157 0 57 chr3 120305892 120305910 -107218668 - L1MA9 LINE L1 -3 6309 6292 2670 180 31 4 chr3 120305910 120306394 -107218184 - LOR1a LTR ERV1 0 497 1 271 157 0 57 chr3 120306394 120306445 -107218133 - L1MA9 LINE L1 -20 6292 6244 1559 211 65 25 chr3 120306477 120306875 -107217703 + MLT2D LTR ERVL 1 414 0 293 237 147 11 chr3 120306952 120307129 -107217449 + L1MC3 LINE L1 3855 4055 -2091 1717 215 10 25 chr3 120307619 120308015 -107216563 + MSTD LTR MaLR 1 390 -6 4954 256 63 27 chr3 120308057 120309568 -107215010 + MSTD-int LTR MaLR 29 1594 -141 398 236 52 52 chr3 120309669 120309881 -107214697 - MER65A-int LTR ERV1 -4589 282 71 1546 178 100 17 chr3 120309952 120310312 -107214266 - MER65A LTR ERV1 0 445 56 2138 192 57 36 chr3 120310641 120311136 -107213442 - MLT1D LTR MaLR 0 505 1 2259 173 88 34 chr3 120311764 120312353 -107212225 + L1MC3 LINE L1 7164 7784 -1 800 277 106 31 chr3 120312464 120312756 -107211822 + L3 LINE CR1 1245 1558 -19 1941 216 31 62 chr3 120313863 120314413 -107210165 - MLT2B3 LTR ERVL -2 552 20 2173 102 24 0 chr3 120314575 120314868 -107209710 - AluY SINE Alu -11 300 1 22 0 0 0 chr3 120315015 120315037 -107209541 + GC_rich Low_complexity Low_complexity 1 22 0 709 158 0 27 chr3 120315665 120315849 -107208729 + (TA)n Simple_repeat Simple_repeat 2 180 0 3269 146 10 36 chr3 120315871 120316701 -107207877 - L1P5 LINE L1 -360 5791 4979 325 323 83 63 chr3 120316873 120317462 -107207116 + L1MC3 LINE L1 4457 5057 -1089 238 326 51 46 chr3 120317874 120318224 -107206354 + L1MC3 LINE L1 5572 5923 -1885 2329 194 39 45 chr3 120318800 120319362 -107205216 + L1MC3 LINE L1 6300 6858 -927 396 217 33 0 chr3 120319414 120319506 -107205072 + L1MC3 LINE L1 6856 6950 -835 6982 105 19 10 chr3 120319614 120320906 -107203672 + MER65-int LTR ERV1 3268 4616 -601 1981 143 0 3 chr3 120321154 120321455 -107203123 + AluSq SINE Alu 1 300 -13 733 164 33 59 chr3 120321520 120321672 -107202906 + Tigger7 DNA MER2_type 2439 2586 -1 933 274 35 40 chr3 120322281 120322682 -107201896 + MER65-int LTR ERV1 381 779 -4092 976 182 43 24 chr3 120322714 120322967 -107201611 - L1PB1 LINE L1 -1 6150 5893 904 283 29 11 chr3 120373337 120373613 -107150965 + L1MEc LINE L1 136 416 -5980 * 1287 233 54 64 chr3 120373612 120373731 -107150847 + L1MEc LINE L1 647 766 -5630 2142 52 34 0 chr3 120373731 120373999 -107150579 + AluY SINE Alu 23 299 -12 1287 233 54 64 chr3 120373999 120374455 -107150123 + L1MEc LINE L1 766 1216 -5180 279 0 0 0 chr3 120374555 120374586 -107149992 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 1315 213 30 43 chr3 120375378 120375499 -107149079 + AluJb SINE Alu 1 122 -180 2035 101 11 0 chr3 120375499 120375815 -107148763 - AluY SINE Alu 0 319 1 1315 213 30 43 chr3 120375815 120375997 -107148581 + AluJb SINE Alu 122 301 -1 240 228 18 0 chr3 120375997 120376054 -107148524 + GA-rich Low_complexity Low_complexity 1 58 0 42 0 0 0 chr3 120376589 120376631 -107147947 + AT_rich Low_complexity Low_complexity 1 42 0 260 302 12 12 chr3 120376647 120376733 -107147845 + MIR SINE MIR 72 157 -105 766 286 213 22 chr3 120376734 120377105 -107147473 - MLT1H LTR MaLR 0 549 108 623 206 14 24 chr3 120377264 120377684 -107146894 + GA-rich Low_complexity Low_complexity 1 415 0 696 202 6 11 chr3 120377710 120377888 -107146690 + GA-rich Low_complexity Low_complexity 3 179 0 299 228 26 9 chr3 120377909 120378023 -107146555 + GA-rich Low_complexity Low_complexity 1 116 0 723 298 78 4 chr3 120379809 120380051 -107144527 - MIR SINE MIR -2 260 1 270 337 0 11 chr3 120380079 120380171 -107144407 + MIR SINE MIR 55 145 -117 2205 112 0 0 chr3 120381119 120381413 -107143165 - AluSc SINE Alu -15 294 1 310 282 94 28 chr3 120381645 120381826 -107142752 - MIR SINE MIR -59 203 11 2120 132 0 7 chr3 120382774 120383084 -107141494 + AluSx SINE Alu 1 308 -4 438 256 48 0 chr3 120383407 120383532 -107141046 + MIR SINE MIR 90 220 -42 1455 38 71 22 chr3 120383771 120383955 -107140623 + AluY SINE Alu 1 193 -118 223 317 42 108 chr3 120384014 120384134 -107140444 - L2 LINE L2 -3 3269 3158 536 281 113 72 chr3 120384204 120384539 -107140039 + MLT1K LTR MaLR 199 547 -41 215 188 0 42 chr3 120385369 120385417 -107139161 - L2 LINE L2 -38 3234 3189 39 38 0 0 chr3 120386479 120386532 -107138046 + AT_rich Low_complexity Low_complexity 1 53 0 2066 134 0 3 chr3 120386770 120387068 -107137510 - AluSx SINE Alu -15 297 1 1287 238 52 6 chr3 120387565 120387930 -107136648 + L1ME2 LINE L1 5772 6153 -11 221 250 0 0 chr3 120387932 120387980 -107136598 + GA-rich Low_complexity Low_complexity 2 49 0 1253 258 90 82 chr3 120388021 120388404 -107136174 + MLT2E LTR ERVL 24 415 -213 597 192 81 6 chr3 120388404 120388576 -107136002 - MER53 DNA DNA -3 186 2 1253 258 90 82 chr3 120388576 120388790 -107135788 + MLT2E LTR ERVL 415 626 -2 320 333 80 27 chr3 120389120 120389270 -107135308 + MIR SINE MIR 78 235 -27 316 207 45 36 chr3 120389787 120389898 -107134680 + L1MC5 LINE L1 7609 7720 -241 26 0 0 0 chr3 120389942 120389968 -107134610 + AT_rich Low_complexity Low_complexity 1 26 0 2720 99 0 0 chr3 120390256 120390620 -107133958 + THE1B LTR MaLR 1 364 0 403 272 126 95 chr3 120391441 120391735 -107132843 - LTR16C LTR ERVL -188 303 1 206 164 45 15 chr3 120392161 120392228 -107132350 + (TA)n Simple_repeat Simple_repeat 1 69 0 1914 164 3 3 chr3 120392388 120392686 -107131892 + AluJb SINE Alu 3 300 -12 312 269 23 31 chr3 120393568 120393698 -107130880 + LTR67 LTR ERVL 429 557 0 22 0 0 0 chr3 120393701 120393723 -107130855 + AT_rich Low_complexity Low_complexity 1 22 0 345 284 69 26 chr3 120393806 120393922 -107130656 - MIR SINE MIR -72 136 16 2160 202 34 87 chr3 120394419 120395003 -107129575 - MLT2B3 LTR ERVL 0 554 2 34 42 0 0 chr3 120395118 120395166 -107129412 + AT_rich Low_complexity Low_complexity 1 48 0 1311 308 32 10 chr3 120395355 120395761 -107128817 - LTR16A LTR ERVL -35 415 1 254 239 155 0 chr3 120395764 120395835 -107128743 - L2 LINE L2 -1338 1976 1895 187 378 49 12 chr3 120396228 120396257 -107128321 - L2 LINE L2 -4 3309 3283 1761 154 21 0 chr3 120396257 120396543 -107128035 + AluJo SINE Alu 5 296 -16 187 378 49 12 chr3 120396543 120396677 -107127901 - L2 LINE L2 -30 3283 3140 225 94 0 0 chr3 120396792 120396824 -107127754 + (TTTC)n Simple_repeat Simple_repeat 2 33 0 1666 78 5 0 chr3 120396837 120397042 -107127536 - AluSp SINE Alu -107 206 1 622 307 52 22 chr3 120397963 120398226 -107126352 + MLT1H1 LTR MaLR 3 268 -287 527 228 53 37 chr3 120398392 120398581 -107125997 + MLT1H1 LTR MaLR 398 589 -1 1860 264 74 19 chr3 120398808 120399338 -107125240 + MLT1F1 LTR MaLR 1 559 -8 408 294 65 46 chr3 120399716 120400034 -107124544 + MLT1H1 LTR MaLR 7 288 -297 1583 189 108 17 chr3 120400141 120400501 -107124077 - MSTD LTR MaLR -2 394 2 1093 264 44 58 chr3 120400677 120401200 -107123378 + MLT1F1 LTR MaLR 96 567 0 2336 86 7 0 chr3 120401290 120401594 -107122984 - AluY SINE Alu -5 306 1 225 299 38 32 chr3 120401772 120401929 -107122649 - L1M4 LINE L1 -4937 1605 1448 * 296 102 51 51 chr3 120401925 120401940 -107122638 + L1MA3 LINE L1 5830 5844 -461 1919 144 16 43 chr3 120401940 120402075 -107122503 - L1MA3 LINE L1 0 6305 6168 1266 311 7 91 chr3 120402075 120402420 -107122158 + AluSq SINE Alu 1 319 0 1919 144 16 43 chr3 120402420 120402656 -107121922 - L1MA3 LINE L1 -137 6168 5941 296 102 51 51 chr3 120402656 120402699 -107121879 + L1MA3 LINE L1 5843 5888 -417 * 13588 179 56 7 chr3 120402693 120403726 -107120852 - L1MA2 LINE L1 -247 7476 6495 2269 84 0 0 chr3 120403726 120404041 -107120537 - AluY SINE Alu 0 315 1 13588 179 56 7 chr3 120404041 120410006 -107114572 - L1MA2 LINE L1 -1228 6495 13 27 49 0 0 chr3 120410300 120410341 -107114237 + AT_rich Low_complexity Low_complexity 1 41 0 315 0 0 0 chr3 120410988 120411023 -107113555 + (TG)n Simple_repeat Simple_repeat 2 36 0 2154 165 67 15 chr3 120411244 120411649 -107112929 + MSTB LTR MaLR 1 426 0 811 273 98 88 chr3 120412017 120412764 -107111814 + L2 LINE L2 1896 2649 -665 936 169 51 11 chr3 120412795 120412973 -107111605 - AluJ SINE Alu -8 304 120 814 161 7 15 chr3 120413005 120413142 -107111436 - AluJ SINE Alu -176 136 1 481 363 49 29 chr3 120413215 120413501 -107111077 + L2 LINE L2 2740 3028 -285 2186 129 0 0 chr3 120413675 120413970 -107110608 + AluSq SINE Alu 3 297 -16 582 301 75 19 chr3 120413988 120414254 -107110324 + L2 LINE L2 3032 3312 -1 208 191 0 79 chr3 120414917 120414980 -107109598 + L2 LINE L2 2693 2750 -564 12256 230 38 16 chr3 120415024 120415122 -107109456 - L1MA9 LINE L1 -46 7685 7591 213 39 0 0 chr3 120415122 120415148 -107109430 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1910 152 7 0 chr3 120415148 120415437 -107109141 - AluSx SINE Alu -21 291 1 12256 230 38 16 chr3 120415437 120419818 -107104760 - L1MA9 LINE L1 -139 7592 3088 2368 72 3 3 chr3 120419818 120420108 -107104470 + AluY SINE Alu 1 290 -21 1075 226 47 40 chr3 120420108 120420555 -107104023 + MLT2B3 LTR ERVL 99 546 -8 715 177 7 14 chr3 120420559 120420700 -107103878 - L1P LINE L1 -3156 2990 2851 23 33 0 0 chr3 120422394 120422424 -107102154 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 120423870 120423892 -107100686 + AT_rich Low_complexity Low_complexity 1 22 0 2284 36 0 4 chr3 120423892 120424173 -107100405 - L1PA5 LINE L1 -7 6147 5868 693 269 119 36 chr3 120424537 120424949 -107099629 + MLT1J1 LTR MaLR 1 446 0 550 286 60 6 chr3 120425726 120425894 -107098684 - MIR SINE MIR -64 198 22 1256 190 93 60 chr3 120425943 120426296 -107098282 - MLT1A1 LTR MaLR 0 365 1 511 268 85 12 chr3 120426429 120426593 -107097985 + MLT1J2 LTR MaLR 261 436 -14 453 279 79 64 chr3 120427806 120428071 -107096507 + LTR16A1 LTR ERVL 2 270 -187 1284 280 90 37 chr3 120428084 120428706 -107095872 - MLT2F LTR ERVL -8 655 1 463 262 47 0 chr3 120428755 120428904 -107095674 + LTR16A1 LTR ERVL 298 453 -4 983 220 45 111 chr3 120429058 120429218 -107095360 - HsTC2 DNA Tc2 -72 1826 1657 1695 146 17 21 chr3 120429218 120429506 -107095072 - AluJo SINE Alu -9 303 17 983 220 45 111 chr3 120429506 120429851 -107094727 - HsTC2 DNA Tc2 -241 1657 1280 304 253 192 0 chr3 120429885 120429984 -107094594 - HsTC2 DNA Tc2 -1774 124 7 192 411 70 13 chr3 120429998 120430156 -107094422 - L2 LINE L2 -638 2676 2510 295 247 0 41 chr3 120431270 120431367 -107093211 - L1MC5 LINE L1 -37 7924 7832 280 310 9 44 chr3 120431748 120431861 -107092717 - LTR67 LTR ERVL -418 139 31 367 318 91 19 chr3 120431957 120432111 -107092467 - MIR SINE MIR -92 170 6 25 0 0 0 chr3 120433123 120433148 -107091430 + AT_rich Low_complexity Low_complexity 1 25 0 207 167 0 0 chr3 120433350 120433392 -107091186 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2542 36 3 0 chr3 120434028 120434329 -107090249 + AluY SINE Alu 1 302 -9 231 36 0 0 chr3 120434334 120434362 -107090216 + (TA)n Simple_repeat Simple_repeat 2 29 0 2025 123 3 10 chr3 120434703 120434996 -107089582 - AluSg SINE Alu -19 291 1 911 281 84 27 chr3 120435121 120436171 -107088407 - L1MCa LINE L1 -4337 2270 929 481 302 86 3 chr3 120436309 120436647 -107087931 - L1MEc LINE L1 -1538 4677 4312 1316 284 61 76 chr3 120436654 120437921 -107086657 - L1MEc LINE L1 -2504 3711 2464 2406 142 18 8 chr3 120437922 120438323 -107086255 - HSMAR2 DNA Mariner 0 1302 898 185 0 40 0 chr3 120438330 120438355 -107086223 + (TG)n Simple_repeat Simple_repeat 2 27 0 3832 156 11 3 chr3 120438375 120439009 -107085569 - HSMAR2 DNA Mariner -465 837 199 4235 138 20 0 chr3 120439009 120439660 -107084918 - L1PA15 LINE L1 -5 6160 5497 1314 90 0 107 chr3 120439660 120439767 -107084811 + L1P4 LINE L1 5378 5446 -719 1566 158 10 62 chr3 120439767 120440071 -107084507 - AluJo SINE Alu -24 288 1 1314 90 0 107 chr3 120440071 120440207 -107084371 + L1P4 LINE L1 5446 5595 -570 1179 97 20 31 chr3 120440208 120440403 -107084175 - HSMAR2 DNA Mariner -1102 200 8 280 265 108 26 chr3 120440421 120440734 -107083844 - L1MEc LINE L1 -3775 2440 2146 527 246 0 0 chr3 120442196 120442310 -107082268 + FRAM SINE Alu 1 114 -62 878 211 0 22 chr3 120442310 120442490 -107082088 + AluJo SINE Alu 85 260 -52 180 77 0 0 chr3 120442509 120442535 -107082043 + (TAAAA)n Simple_repeat Simple_repeat 1 26 0 195 186 0 0 chr3 120442537 120442580 -107081998 + CT-rich Low_complexity Low_complexity 2 44 0 286 312 0 16 chr3 120442761 120442887 -107081691 + L1MC4 LINE L1 6497 6618 -1190 594 119 51 18 chr3 120442896 120443402 -107081176 + (TA)n Simple_repeat Simple_repeat 1 522 0 306 202 71 24 chr3 120443424 120443508 -107081070 + L1MC4 LINE L1 6615 6702 -1340 643 115 28 35 chr3 120443542 120444093 -107080485 + (TA)n Simple_repeat Simple_repeat 1 546 0 644 129 9 43 chr3 120444109 120444436 -107080142 + (TA)n Simple_repeat Simple_repeat 1 315 0 881 227 88 49 chr3 120444436 120444744 -107079834 + L1MC4 LINE L1 6613 6932 -1110 819 281 90 63 chr3 120444750 120445273 -107079305 - MLT1F LTR MaLR -5 537 1 1889 113 4 0 chr3 120445616 120445873 -107078705 + AluSg SINE Alu 1 258 -52 645 246 134 6 chr3 120445943 120446122 -107078456 - MER58C DNA MER1_type -13 202 1 674 288 24 20 chr3 120446941 120447191 -107077387 + MIR SINE MIR 9 259 -3 2807 138 19 70 chr3 120447298 120447783 -107076795 + L1MA8 LINE L1 5290 5744 -407 511 134 113 0 chr3 120447783 120447880 -107076698 + HY1 scRNA scRNA 1 108 -4 2807 138 19 70 chr3 120447880 120447966 -107076612 + L1MA8 LINE L1 5744 5833 -318 * 15740 151 128 7 chr3 120447965 120450833 -107073745 + L1PA12 LINE L1 4 3224 -4360 23 33 0 0 chr3 120451279 120451309 -107073269 + AT_rich Low_complexity Low_complexity 1 30 0 329 299 22 29 chr3 120452540 120452677 -107071901 - L2 LINE L2 0 3313 3178 31 76 0 0 chr3 120454334 120454400 -107070178 + AT_rich Low_complexity Low_complexity 1 66 0 22584 151 31 16 chr3 120454474 120459691 -107064887 + L1PA8A LINE L1 3 5365 -1096 6378 75 8 11 chr3 120459791 120460861 -107063717 + L1PA8A LINE L1 5374 6446 0 1303 210 34 9 chr3 120461795 120462116 -107062462 - L1M2 LINE L1 -4402 2139 1573 4011 194 66 4 chr3 120462120 120462637 -107061941 + L1 LINE L1 3710 4308 -1838 737 43 0 0 chr3 120462637 120462731 -107061847 - L1PA2 LINE L1 0 6155 6062 4011 194 66 4 chr3 120462731 120463119 -107061459 + L1 LINE L1 4308 4671 -1475 1994 116 78 32 chr3 120463119 120463465 -107061113 + THE1B LTR MaLR 1 362 -2 5161 119 14 0 chr3 120463467 120464206 -107060372 + THE1B-int LTR MaLR 1 749 -831 28 0 0 0 chr3 120464317 120464345 -107060233 + AT_rich Low_complexity Low_complexity 1 28 0 2890 170 80 9 chr3 120465169 120465745 -107058833 + LTR8A LTR ERV1 1 617 -110 4306 114 12 13 chr3 120465840 120472052 -107052526 + L1PA8 LINE L1 105 6487 0 239 200 18 0 chr3 120472059 120472114 -107052464 + L1ME2 LINE L1 5912 5967 -197 407 193 182 83 chr3 120472159 120472340 -107052238 + L1ME2 LINE L1 5965 6163 -1 532 161 0 0 chr3 120472674 120472755 -107051823 + LTR8 LTR ERV1 608 688 -3 642 236 44 104 chr3 120472757 120473100 -107051478 + HUERS-P1 LTR ERV1 1 396 -5867 6333 201 31 19 chr3 120473111 120474769 -107049809 + HUERS-P1 LTR ERV1 557 2265 -2615 593 204 9 144 chr3 120474785 120475022 -107049556 + HUERS-P1 LTR ERV1 2327 2507 -3439 243 146 0 0 chr3 120475285 120475340 -107049238 + (A)n Simple_repeat Simple_repeat 1 55 0 949 266 24 8 chr3 120475360 120475621 -107048957 + HUERS-P1 LTR ERV1 2332 3409 -3723 253 116 23 0 chr3 120475621 120475664 -107048914 + MER34C LTR ERV1 169 212 -373 8709 158 81 80 chr3 120475721 120479154 -107045424 + HUERS-P1 LTR ERV1 1843 6251 -80 800 278 0 0 chr3 120479294 120479474 -107045104 + HUERS-P1 LTR ERV1 6077 6256 -7 2795 174 116 34 chr3 120479481 120480138 -107044440 + LTR8A LTR ERV1 1 711 -16 1416 96 35 0 chr3 120480713 120480942 -107043636 - L1MA8 LINE L1 0 6291 6055 282 283 118 26 chr3 120481088 120481240 -107043338 + LTR33 LTR ERVL 3 168 -353 246 288 117 31 chr3 120481348 120481511 -107043067 + LTR33 LTR ERVL 334 510 -11 253 217 24 72 chr3 120481546 120481629 -107042949 + L2 LINE L2 3194 3272 0 196 276 17 0 chr3 120481992 120482050 -107042528 + MIR SINE MIR 158 216 -46 402 21 0 0 chr3 120482141 120482188 -107042390 + (CA)n Simple_repeat Simple_repeat 2 48 0 183 80 0 0 chr3 120482275 120482300 -107042278 + (CCCCCA)n Simple_repeat Simple_repeat 5 29 0 22 0 0 0 chr3 120483104 120483126 -107041452 + AT_rich Low_complexity Low_complexity 1 22 0 23 68 0 0 chr3 120484284 120484328 -107040250 + AT_rich Low_complexity Low_complexity 1 44 0 541 139 0 46 chr3 120484363 120484471 -107040107 - LTR18B LTR ERVL 0 614 512 351 311 68 32 chr3 120484498 120484688 -107039890 - MIR SINE MIR -48 214 18 453 303 18 0 chr3 120485101 120485266 -107039312 - Charlie8 DNA MER1_type -2163 254 87 276 30 0 0 chr3 120485997 120486030 -107038548 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 564 232 116 96 chr3 120486639 120486993 -107037585 - MER57A LTR ERV1 -1 402 42 2974 76 13 27 chr3 120487254 120487740 -107036838 + MLT2A1 LTR ERVL 2 453 0 467 115 0 13 chr3 120488421 120488499 -107036079 - MSTB2 LTR MaLR 0 457 381 329 221 10 0 chr3 120488673 120488777 -107035801 + CT-rich Low_complexity Low_complexity 1 105 0 220 355 81 0 chr3 120488792 120488916 -107035662 - L2 LINE L2 -20 3293 3160 318 274 0 0 chr3 120489212 120489296 -107035282 + L2 LINE L2 795 878 -2436 189 323 21 43 chr3 120489331 120489424 -107035154 + L2 LINE L2 2070 2160 -1154 189 318 7 80 chr3 120489548 120489627 -107034951 + MIR SINE MIR 123 187 -75 2253 227 49 4 chr3 120489627 120490161 -107034417 + MER68 LTR ERV1 1 558 -4 189 318 7 80 chr3 120490161 120490232 -107034346 + MIR SINE MIR 187 262 0 878 367 133 6 chr3 120490262 120490948 -107033630 + L2 LINE L2 2196 2968 -346 25 65 0 0 chr3 120491085 120491131 -107033447 + AT_rich Low_complexity Low_complexity 1 46 0 1708 232 45 32 chr3 120491540 120492095 -107032483 - L1M4 LINE L1 -820 5326 4765 431 90 0 0 chr3 120492120 120492187 -107032391 + L1MA7 LINE L1 6225 6291 0 664 296 7 11 chr3 120492193 120492467 -107032111 - L1MCa LINE L1 -2582 3844 3572 678 167 0 0 chr3 120492480 120492588 -107031990 - AluJb SINE Alu -204 108 1 1957 215 34 2 chr3 120492608 120493114 -107031464 - L1MCa LINE L1 -2921 3505 2984 * 7098 188 49 1 chr3 120493110 120494505 -107030073 - L1MCa LINE L1 -4932 1494 34 844 294 58 3 chr3 120494815 120495128 -107029450 - MER46C DNA MER2_type -2 336 7 295 324 115 45 chr3 120495545 120495789 -107028789 + MIR SINE MIR 2 262 0 226 224 17 0 chr3 120496049 120496107 -107028471 - MLT1H LTR MaLR -3 546 488 24 0 0 0 chr3 120496250 120496274 -107028304 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 120496892 120496915 -107027663 + AT_rich Low_complexity Low_complexity 1 23 0 276 170 0 0 chr3 120496926 120496979 -107027599 + CT-rich Low_complexity Low_complexity 3 55 0 181 98 49 0 chr3 120496978 120497019 -107027559 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 * 22 70 0 0 chr3 120497157 120497200 -107027378 + AT_rich Low_complexity Low_complexity 1 43 0 195 42 0 0 chr3 120497200 120497224 -107027354 + (GA)n Simple_repeat Simple_repeat 2 25 0 450 252 20 40 chr3 120497309 120497460 -107027118 - MLT2D LTR ERVL -164 250 103 32 26 0 0 chr3 120497460 120497499 -107027079 + AT_rich Low_complexity Low_complexity 1 39 0 517 227 8 0 chr3 120497503 120497622 -107026956 - MLT2B2 LTR ERVL -393 122 3 2144 96 14 10 chr3 120497661 120497978 -107026600 - AluSp SINE Alu 0 313 1 272 344 76 0 chr3 120498014 120498145 -107026433 + MIR SINE MIR 5 145 -117 27 0 0 0 chr3 120498237 120498264 -107026314 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr3 120498290 120498320 -107026258 + AT_rich Low_complexity Low_complexity 1 30 0 456 242 78 70 chr3 120498614 120498870 -107025708 - LTR41 LTR ERVL -6 767 510 285 51 0 0 chr3 120499253 120499292 -107025286 + (TC)n Simple_repeat Simple_repeat 2 40 0 586 279 27 6 chr3 120499302 120499485 -107025093 - LTR41 LTR ERVL -586 187 1 26 74 0 0 chr3 120500612 120500666 -107023912 + AT_rich Low_complexity Low_complexity 1 54 0 228 320 70 36 chr3 120501101 120501719 -107022859 - L1M4 LINE L1 -1637 4509 3871 750 228 33 47 chr3 120502044 120502259 -107022319 + MER58A DNA MER1_type 2 213 -11 2464 78 0 0 chr3 120502530 120502837 -107021741 + AluY SINE Alu 2 308 -3 2129 254 65 17 chr3 120504641 120505501 -107019077 - L1MEc LINE L1 -4109 2287 1387 228 344 39 26 chr3 120505816 120505970 -107018608 + MIR3 SINE MIR 38 193 -15 27 29 0 0 chr3 120506137 120506171 -107018407 + AT_rich Low_complexity Low_complexity 1 34 0 28 0 0 0 chr3 120506194 120506222 -107018356 + AT_rich Low_complexity Low_complexity 1 28 0 233 271 197 0 chr3 120506304 120506426 -107018152 - Charlie7 DNA MER1_type -853 1759 1614 2194 70 3 18 chr3 120506493 120506698 -107017880 - AluY SINE Alu 0 308 107 5951 64 13 14 chr3 120506698 120507479 -107017099 + LTR17 LTR ERV1 1 780 0 2194 70 3 18 chr3 120507479 120507585 -107016993 - AluY SINE Alu -201 107 1 296 229 36 0 chr3 120507599 120507682 -107016896 - Charlie7 DNA MER1_type -1079 1533 1448 375 233 98 43 chr3 120507748 120507911 -107016667 - Charlie7 DNA MER1_type -2433 179 8 200 280 0 2 chr3 120509094 120509151 -107015427 + MIR SINE MIR 98 148 -60 28 0 0 0 chr3 120509340 120509368 -107015210 + AT_rich Low_complexity Low_complexity 1 28 0 205 290 72 0 chr3 120509464 120509533 -107015045 - MIR SINE MIR -21 241 168 270 0 0 0 chr3 120509613 120509643 -107014935 + (CA)n Simple_repeat Simple_repeat 2 31 0 3945 140 8 2 chr3 120509973 120510615 -107013963 - L1PA16 LINE L1 -267 5899 5254 1097 251 36 0 chr3 120510629 120510876 -107013702 + L1PA16 LINE L1 5902 6157 -9 391 362 29 68 chr3 120512253 120512593 -107011985 - L2 LINE L2 0 3272 2946 6627 258 27 47 chr3 120512716 120515806 -107008772 + L1M2a LINE L1 4 3007 -4161 1159 182 5 5 chr3 120515840 120516049 -107008529 - AluY SINE Alu 0 311 103 23 33 0 0 chr3 120516458 120516488 -107008090 + AT_rich Low_complexity Low_complexity 1 30 0 300 172 0 0 chr3 120516645 120516703 -107007875 + (CA)n Simple_repeat Simple_repeat 1 58 0 25 65 0 0 chr3 120518736 120518782 -107005796 + AT_rich Low_complexity Low_complexity 1 46 0 190 257 29 86 chr3 120518812 120518952 -107005626 + MIR SINE MIR 74 205 -57 21 0 0 0 chr3 120519518 120519539 -107005039 + AT_rich Low_complexity Low_complexity 1 21 0 677 347 113 39 chr3 120520104 120520533 -107004045 + L2 LINE L2 1990 2386 -886 2163 109 0 7 chr3 120520533 120520826 -107003752 + AluSg SINE Alu 1 291 -19 284 0 28 0 chr3 120520832 120520868 -107003710 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 677 347 113 39 chr3 120520868 120521631 -107002947 + L2 LINE L2 2390 3267 -5 1491 225 53 26 chr3 120521979 120522433 -107002145 - MLT1C LTR MaLR 0 467 2 21 57 0 0 chr3 120522627 120522662 -107001916 + AT_rich Low_complexity Low_complexity 1 35 0 1946 150 36 6 chr3 120523067 120523426 -107001152 - L1PB2 LINE L1 0 6151 5782 577 159 0 0 chr3 120523441 120523529 -107001049 + LOR1a LTR ERV1 304 391 -106 2495 94 22 0 chr3 120523565 120523927 -107000651 - L1PB2 LINE L1 -359 5792 5423 2160 187 99 0 chr3 120524507 120524930 -106999648 - LOR1a LTR ERV1 0 497 33 285 156 0 0 chr3 120524965 120525010 -106999568 - LOR1a LTR ERV1 -452 45 1 461 228 11 0 chr3 120525167 120525259 -106999319 - Tigger5 DNA MER2_type 0 2323 2231 249 229 57 14 chr3 120525308 120525378 -106999200 - Tigger5 DNA MER2_type 0 2323 2251 284 293 78 36 chr3 120525422 120525589 -106998989 - MIR SINE MIR -48 214 41 1789 119 51 21 chr3 120525989 120526324 -106998254 - L1MA7 LINE L1 -15 6276 5932 1641 213 69 32 chr3 120526385 120526850 -106997728 + Charlie4a DNA MER1_type 24 505 -3 202 318 0 0 chr3 120527307 120527370 -106997208 + (TA)n Simple_repeat Simple_repeat 2 64 0 193 310 40 70 chr3 120527892 120527992 -106996586 + L2 LINE L2 3176 3272 0 2157 93 14 3 chr3 120528914 120529204 -106995374 + AluSq SINE Alu 1 293 -20 339 322 5 109 chr3 120529478 120529680 -106994898 - MER5A DNA MER1_type -2 187 7 815 148 0 0 chr3 120531536 120531664 -106992914 - AluSg/x SINE Alu -9 300 173 1309 252 9 104 chr3 120531865 120531971 -106992607 - L2 LINE L2 -842 2472 2358 3229 144 2 4 chr3 120531971 120532458 -106992120 + MER66B LTR ERV1 1 486 0 1309 252 9 104 chr3 120532458 120532878 -106991700 - L2 LINE L2 -956 2358 1996 2027 130 7 0 chr3 120532967 120533268 -106991310 - AluSg1 SINE Alu -6 303 1 936 331 156 19 chr3 120533804 120533858 -106990720 + L2 LINE L2 2480 2525 -788 1648 146 90 39 chr3 120533858 120534215 -106990363 - THE1C LTR MaLR 0 375 1 936 331 156 19 chr3 120534215 120534907 -106989671 + L2 LINE L2 2525 3308 -5 595 243 97 15 chr3 120534968 120535236 -106989342 - L1M4 LINE L1 -1602 4544 4255 2077 247 126 41 chr3 120535315 120536478 -106988100 - L1M4 LINE L1 -2047 4099 2838 273 231 231 0 chr3 120536487 120536617 -106987961 - L1M4 LINE L1 -3654 2492 2333 3696 175 47 34 chr3 120536659 120537466 -106987112 - L1MA6 LINE L1 -5 6937 6120 1511 143 8 4 chr3 120537460 120537725 -106986853 - L1MA6 LINE L1 -1250 5538 5273 * 5115 229 31 7 chr3 120537710 120538625 -106985953 - L1MA6 LINE L1 -1919 4869 3912 2081 86 4 4 chr3 120538625 120538894 -106985684 - AluSq SINE Alu -39 274 6 5115 229 31 7 chr3 120538894 120539275 -106985303 - L1MA6 LINE L1 -2876 3912 3542 4392 221 3 2 chr3 120539275 120540224 -106984354 - L1PA16 LINE L1 -1421 4725 3776 4247 187 30 16 chr3 120540223 120541637 -106982941 + L1PA16 LINE L1 4724 6150 -16 * 4504 262 45 35 chr3 120541915 120541958 -106982620 - L1MA6 LINE L1 -3342 3446 3405 2326 81 0 3 chr3 120541958 120542256 -106982322 - AluY SINE Alu -14 297 1 4504 262 45 35 chr3 120542256 120545782 -106978796 - L1MA6 LINE L1 -3383 3405 79 222 37 0 0 chr3 120546541 120546568 -106978010 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 268 320 25 25 chr3 120547352 120547474 -106977104 + MER103 DNA DNA 44 165 -1 249 327 48 55 chr3 120547551 120547716 -106976862 - MLT1J2 LTR MaLR -5 445 282 218 239 42 0 chr3 120547950 120548021 -106976557 + (CATATA)n Simple_repeat Simple_repeat 6 79 0 218 227 0 0 chr3 120548215 120548259 -106976319 + (TA)n Simple_repeat Simple_repeat 2 45 0 225 0 0 0 chr3 120548259 120548284 -106976294 + (GA)n Simple_repeat Simple_repeat 2 26 0 1832 143 12 40 chr3 120549391 120549712 -106974866 + AluSx SINE Alu 1 312 0 22 0 0 0 chr3 120550763 120550785 -106973793 + AT_rich Low_complexity Low_complexity 1 22 0 180 111 0 0 chr3 120550867 120550894 -106973684 + (TG)n Simple_repeat Simple_repeat 2 28 0 319 310 177 6 chr3 120552018 120552176 -106972402 + MIR SINE MIR 78 262 0 27 81 0 0 chr3 120552890 120552952 -106971626 + AT_rich Low_complexity Low_complexity 1 62 0 503 296 103 41 chr3 120553939 120554295 -106970283 - MLT1I LTR MaLR -2 448 17 1903 133 174 11 chr3 120554400 120554768 -106969810 - MSTA LTR MaLR 0 428 1 2095 109 7 3 chr3 120554847 120555155 -106969423 - AluSx SINE Alu 0 309 1 2287 92 0 3 chr3 120555369 120555662 -106968916 + AluY SINE Alu 1 292 -19 23 0 0 0 chr3 120555920 120555943 -106968635 + AT_rich Low_complexity Low_complexity 1 23 0 314 250 107 21 chr3 120557717 120557857 -106966721 + MLT1L LTR MaLR 253 404 -211 515 217 12 25 chr3 120558118 120558279 -106966299 - MER53 DNA DNA 0 189 31 2637 170 10 71 chr3 120558667 120559248 -106965330 - MER44D DNA MER2_type 0 605 5 12476 31 2 1 chr3 120560446 120561966 -106962612 + L1P LINE L1 1478 2999 -3147 347 151 43 0 chr3 120562162 120562255 -106962323 + (TA)n Simple_repeat Simple_repeat 2 98 0 215 200 30 10 chr3 120562305 120562405 -106962173 + (TA)n Simple_repeat Simple_repeat 2 103 0 231 322 58 63 chr3 120562469 120562674 -106961904 + L1MC/D LINE L1 5524 5727 -2081 601 244 0 0 chr3 120562792 120562911 -106961667 + FLAM_A SINE Alu 1 119 -14 2242 164 35 0 chr3 120562932 120563329 -106961249 - L1MA6 LINE L1 -24 6276 5866 1446 194 44 14 chr3 120563798 120564163 -106960415 - L1MA5 LINE L1 -47 6253 5878 1351 140 10 0 chr3 120564587 120564787 -106959791 + AluSg/x SINE Alu 102 303 -9 28 0 0 0 chr3 120565222 120565250 -106959328 + AT_rich Low_complexity Low_complexity 1 28 0 5118 117 14 3 chr3 120565361 120566102 -106958476 - THE1B-int LTR MaLR -831 749 1 1498 151 93 43 chr3 120566104 120566449 -106958129 - THE1B LTR MaLR -2 362 1 730 232 69 31 chr3 120566469 120566758 -106957820 - L1 LINE L1 -1496 4650 4351 279 0 0 0 chr3 120567274 120567305 -106957273 + (TG)n Simple_repeat Simple_repeat 2 32 0 1455 216 91 10 chr3 120567526 120567911 -106956667 + MSTA LTR MaLR 1 416 -12 53 49 0 0 chr3 120568197 120568278 -106956300 + AT_rich Low_complexity Low_complexity 1 81 0 5831 170 19 20 chr3 120568415 120568515 -106956063 - L1P3 LINE L1 -4734 1141 1042 216 111 0 0 chr3 120568515 120568551 -106956027 + (TTG)n Simple_repeat Simple_repeat 1 36 0 5831 170 19 20 chr3 120568551 120569585 -106954993 - L1P3 LINE L1 -4833 1042 194 298 314 40 75 chr3 120569933 120570159 -106954419 + L2 LINE L2 3091 3308 -5 21 0 0 0 chr3 120571122 120571143 -106953435 + AT_rich Low_complexity Low_complexity 1 21 0 3884 158 16 5 chr3 120571156 120572179 -106952399 + L1PB2 LINE L1 4540 5578 -573 1947 128 54 35 chr3 120572179 120572547 -106952031 - THE1C LTR MaLR 0 375 1 3884 158 16 5 chr3 120572547 120572764 -106951814 + L1PB2 LINE L1 5578 5791 -360 393 124 15 51 chr3 120572770 120572907 -106951671 + (TA)n Simple_repeat Simple_repeat 2 133 0 1820 143 20 25 chr3 120573063 120573421 -106951157 + L1PB2 LINE L1 5796 6151 0 600 350 103 27 chr3 120574750 120575235 -106949343 + L2 LINE L2 2238 2759 -555 444 113 14 0 chr3 120576189 120576260 -106948318 + LTR8A LTR ERV1 1 72 -655 263 265 3 25 chr3 120576385 120576504 -106948074 + L1M4b LINE L1 1343 1632 -5424 1989 264 28 10 chr3 120576547 120577220 -106947358 + L1M4b LINE L1 3168 3852 -3105 184 346 75 9 chr3 120577221 120577328 -106947250 + L2 LINE L2 1020 1133 -2181 26 0 0 0 chr3 120577733 120577759 -106946819 + AT_rich Low_complexity Low_complexity 1 26 0 3045 107 7 4 chr3 120577955 120578405 -106946173 - L1P LINE L1 -1890 4256 3806 541 361 73 22 chr3 120579199 120579570 -106945008 + L2 LINE L2 841 1230 -2084 17948 178 12 13 chr3 120579572 120579925 -106944653 + L1PA13 LINE L1 1727 2079 -4084 2385 78 0 10 chr3 120579925 120580231 -106944347 + AluSc SINE Alu 1 303 -6 17948 178 12 13 chr3 120580231 120581149 -106943429 + L1PA13 LINE L1 2079 2996 -3167 1591 211 69 93 chr3 120581149 120581603 -106942975 - MLT2B3 LTR ERVL 0 554 90 1971 120 3 17 chr3 120581603 120581894 -106942684 - AluY SINE Alu -21 290 4 2366 74 7 0 chr3 120581896 120582195 -106942383 - AluY SINE Alu -10 301 1 2070 138 0 0 chr3 120582195 120582492 -106942086 - AluY SINE Alu -12 299 3 1591 211 69 93 chr3 120582492 120582601 -106941977 - MLT2B3 LTR ERVL -463 91 1 17948 178 12 13 chr3 120582601 120585767 -106938811 + L1PA13 LINE L1 2996 6163 0 375 338 201 7 chr3 120585797 120586096 -106938482 + L2 LINE L2 1221 1577 -1737 2318 60 0 41 chr3 120586098 120586417 -106938161 - AluY SINE Alu -3 308 3 393 162 14 0 chr3 120586609 120586683 -106937895 + MLT1A1 LTR MaLR 291 365 0 2871 249 58 37 chr3 120586683 120586864 -106937714 - L1MC4 LINE L1 -241 7801 7625 1821 127 28 7 chr3 120586864 120587147 -106937431 - AluSg SINE Alu -21 289 1 2871 249 58 37 chr3 120587147 120588007 -106936571 - L1MC4 LINE L1 -417 7625 6739 210 106 0 64 chr3 120588009 120588056 -106936522 + (CAATG)n Simple_repeat Simple_repeat 2 45 0 650 35 0 12 chr3 120588272 120588358 -106936220 + (TTCC)n Simple_repeat Simple_repeat 2 86 0 2139 86 31 10 chr3 120588536 120588828 -106935750 + AluSg1 SINE Alu 1 298 -11 3267 171 24 5 chr3 120589754 120590392 -106934186 - L1 LINE L1 -927 5219 4570 3002 227 30 15 chr3 120590392 120591314 -106933264 + L1M1 LINE L1 3419 4353 -3212 * 11317 85 85 5 chr3 120591312 120593013 -106931565 + L1P LINE L1 1 1836 -4310 213 354 12 12 chr3 120594235 120594317 -106930261 - MER5A DNA MER1_type -26 163 82 2090 93 52 0 chr3 120594764 120595053 -106929525 + AluY SINE Alu 1 304 -7 241 364 55 9 chr3 120596379 120596489 -106928089 + MIR SINE MIR 16 130 -78 1626 118 17 34 chr3 120597007 120597304 -106927274 - AluY SINE Alu -17 294 3 767 347 133 10 chr3 120597326 120597905 -106926673 + L2 LINE L2 1681 2330 -984 288 314 40 75 chr3 120597974 120598200 -106926378 + L2 LINE L2 3091 3308 -5 21 0 0 0 chr3 120599162 120599183 -106925395 + AT_rich Low_complexity Low_complexity 1 21 0 3629 165 22 4 chr3 120599196 120600219 -106924359 + L1P5 LINE L1 4540 5578 -573 1921 143 47 19 chr3 120600219 120600584 -106923994 - THE1C LTR MaLR 0 375 1 182 244 44 22 chr3 120601172 120601217 -106923361 - L2 LINE L2 -200 3072 3027 186 397 13 0 chr3 120601556 120601634 -106922944 + L2 LINE L2 2981 3059 -213 1200 145 18 44 chr3 120602392 120602620 -106921958 + AluSq SINE Alu 78 299 -14 1448 172 51 16 chr3 120604189 120604503 -106920075 + L1MA5 LINE L1 5952 6276 -24 292 325 132 9 chr3 120604851 120604965 -106919613 - MIR SINE MIR -120 142 15 2304 93 0 13 chr3 120605337 120605650 -106918928 + AluSx SINE Alu 1 309 -3 375 338 201 7 chr3 120605652 120605951 -106918627 - L2 LINE L2 -1737 1577 1221 5140 139 19 22 chr3 120605981 120607743 -106916835 - L1PA13 LINE L1 0 6163 4398 21 0 0 0 chr3 120608211 120608232 -106916346 + AT_rich Low_complexity Low_complexity 1 21 0 2201 225 102 57 chr3 120609521 120610168 -106914410 - LTR28 LTR ERV1 -109 911 214 2141 103 0 10 chr3 120610168 120610484 -106914094 + AluY SINE Alu 6 311 0 2201 225 102 57 chr3 120610484 120610708 -106913870 - LTR28 LTR ERV1 -806 214 1 273 385 81 20 chr3 120610823 120610971 -106913607 + MIR SINE MIR 15 171 -91 899 217 29 58 chr3 120611287 120611563 -106913015 - MER58B DNA MER1_type -15 326 59 21 0 0 0 chr3 120611693 120611714 -106912864 + AT_rich Low_complexity Low_complexity 1 21 0 187 329 53 0 chr3 120612047 120612123 -106912455 + L2 LINE L2 2423 2502 -812 232 333 49 0 chr3 120612253 120612334 -106912244 + MLT1I LTR MaLR 66 150 -259 1704 118 10 52 chr3 120612408 120612696 -106911882 + MER51A LTR ERV1 359 634 0 29 47 0 0 chr3 120613771 120613814 -106910764 + AT_rich Low_complexity Low_complexity 1 43 0 2100 115 3 10 chr3 120614123 120614428 -106910150 + AluSc SINE Alu 1 303 -6 1348 243 15 21 chr3 120614511 120614538 -106910040 - MLT2B1 LTR ERVL -14 540 514 375 23 0 0 chr3 120614538 120614582 -106909996 + (TG)n Simple_repeat Simple_repeat 1 44 0 1348 243 15 21 chr3 120614582 120614997 -106909581 - MLT2B1 LTR ERVL -40 514 1 204 192 0 39 chr3 120615366 120615418 -106909160 + (TATATG)n Simple_repeat Simple_repeat 3 52 0 225 237 0 0 chr3 120615421 120615480 -106909098 + (TATG)n Simple_repeat Simple_repeat 2 60 0 1045 90 8 0 chr3 120616072 120616205 -106908373 - AluSq/x SINE Alu -178 134 1 219 139 0 0 chr3 120617734 120617770 -106906808 + (TAA)n Simple_repeat Simple_repeat 2 37 0 1058 351 37 41 chr3 120618515 120619458 -106905120 + MERVL LTR ERVL 3734 4679 -806 1035 236 14 5 chr3 120619458 120619678 -106904900 - MER58A DNA MER1_type 0 224 3 1058 351 37 41 chr3 120619678 120619787 -106904791 + MERVL LTR ERVL 4679 4787 -698 2339 95 0 7 chr3 120619891 120620195 -106904383 - AluSc SINE Alu -2 307 6 396 277 106 24 chr3 120620427 120620632 -106903946 - MIR SINE MIR 0 262 39 315 250 107 21 chr3 120622323 120622463 -106902115 + MLT1L LTR MaLR 253 404 -211 710 169 13 13 chr3 120622722 120622876 -106901702 - MER53 DNA DNA 0 189 36 2644 170 10 71 chr3 120623266 120623847 -106900731 - MER44D DNA MER2_type 0 605 5 3995 215 89 108 chr3 120625358 120626807 -106897771 - MSTD-int LTR MaLR -314 1421 1 1296 240 54 54 chr3 120626812 120627203 -106897375 - MSTD LTR MaLR -5 391 1 305 244 71 76 chr3 120627205 120627443 -106897135 + L1MC4 LINE L1 7801 8037 -5 3420 233 92 2 chr3 120627484 120628401 -106896177 + MER45B DNA AcHobo 5 1003 -37 481 289 150 0 chr3 120628909 120629089 -106895489 - MER3 DNA MER1_type 0 209 3 400 289 11 0 chr3 120629218 120629308 -106895270 + MLT1E1 LTR MaLR 1 91 -563 * 1610 234 24 84 chr3 120629300 120629762 -106894816 + MLT1E1 LTR MaLR 221 654 0 420 161 0 0 chr3 120629782 120629797 -106894781 + (CA)n Simple_repeat Simple_repeat 2 16 -78 2405 194 28 23 chr3 120629797 120630267 -106894311 - MER70A LTR ERVL 0 472 1 420 161 0 0 chr3 120630267 120630344 -106894234 + (CA)n Simple_repeat Simple_repeat 15 94 0 26 0 0 0 chr3 120632424 120632450 -106892128 + AT_rich Low_complexity Low_complexity 1 26 0 183 200 55 18 chr3 120632681 120632736 -106891842 + MIR SINE MIR 156 212 -50 2173 95 0 3 chr3 120632751 120633034 -106891544 + AluSg SINE Alu 12 293 -17 196 108 27 0 chr3 120633217 120633254 -106891324 + L2 LINE L2 3276 3313 0 271 354 94 0 chr3 120633398 120633525 -106891053 - MIR3 SINE MIR -6 202 64 3433 197 43 3 chr3 120635413 120636113 -106888465 + MER44D DNA MER2_type 6 605 0 2238 170 0 0 chr3 120636279 120636644 -106887934 + MER47A DNA MER2_type 2 366 0 2222 156 21 0 chr3 120636644 120637022 -106887556 - MLT1B LTR MaLR -2 388 3 517 298 37 12 chr3 120637195 120637356 -106887222 + L2 LINE L2 2924 3088 -225 1254 206 58 23 chr3 120638277 120638704 -106885874 + pTR5 LTR ERV1 903 1344 -1094 4215 142 21 0 chr3 120638720 120639390 -106885188 + LTR12 LTR ERV1 5 688 0 226 197 211 0 chr3 120639695 120639766 -106884812 + L2 LINE L2 3227 3312 -1 195 42 0 0 chr3 120640024 120640048 -106884530 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1729 115 11 15 chr3 120640051 120640311 -106884267 - AluSg SINE Alu -31 279 21 792 276 84 57 chr3 120641982 120642388 -106882190 - MARNA DNA Mariner -76 510 94 10041 30 0 2 chr3 120642586 120644441 -106880137 + L1PA2 LINE L1 4163 6013 -142 59 43 0 0 chr3 120644568 120644638 -106879940 + GC_rich Low_complexity Low_complexity 1 70 0 23 0 0 0 chr3 120644721 120644744 -106879834 + GC_rich Low_complexity Low_complexity 1 23 0 320 308 59 47 chr3 120645010 120645348 -106879230 - HAL1b LINE L1 -517 831 490 61 15 0 0 chr3 120645372 120645440 -106879138 + AT_rich Low_complexity Low_complexity 1 68 0 243 298 18 0 chr3 120645469 120645526 -106879052 - L2 LINE L2 -8 3264 3207 1673 178 63 56 chr3 120645581 120646007 -106878571 + LTR3 LTR ERVK 1 429 0 492 47 0 16 chr3 120646007 120646071 -106878507 + LTR3b LTR ERVK 438 500 0 211 184 0 0 chr3 120646214 120646252 -106878326 + C-rich Low_complexity Low_complexity 1 38 0 233 289 26 64 chr3 120646389 120646545 -106878033 - L1MC/D LINE L1 -2066 5742 5593 2318 92 0 0 chr3 120646623 120646917 -106877661 - AluSx SINE Alu -18 294 1 21 0 0 0 chr3 120646964 120646985 -106877593 + AT_rich Low_complexity Low_complexity 1 21 0 249 288 245 11 chr3 120648213 120648397 -106876181 + MIR SINE MIR 10 236 -26 200 246 0 18 chr3 120648398 120648455 -106876123 + (TAA)n Simple_repeat Simple_repeat 1 56 0 241 302 48 40 chr3 120648866 120648992 -106875586 + MLT1J1 LTR MaLR 36 162 -284 184 324 142 14 chr3 120649518 120649666 -106874912 - L3 LINE CR1 -66 1511 1345 2005 172 75 12 chr3 120649814 120650238 -106874340 + Tigger2 DNA MER2_type 1 451 -2267 1464 136 8 62 chr3 120650238 120650309 -106874269 - THE1B LTR MaLR 0 364 291 2214 112 3 6 chr3 120650309 120650623 -106873955 + AluSq SINE Alu 1 313 0 1464 136 8 62 chr3 120650623 120650808 -106873770 - THE1B LTR MaLR -73 291 122 2048 146 31 0 chr3 120651282 120651605 -106872973 - LTR12 LTR ERV1 0 714 382 226 299 21 0 chr3 120651611 120651708 -106872870 - LTR30 LTR ERV1 -80 642 544 725 78 10 0 chr3 120651716 120651818 -106872760 - LTR12 LTR ERV1 -445 269 167 338 245 66 88 chr3 120651827 120652100 -106872478 + L1 LINE L1 3378 3644 -2502 459 306 104 0 chr3 120652357 120652540 -106872038 + MIR SINE MIR 29 230 -32 2525 204 17 7 chr3 120653510 120654048 -106870530 + L1 LINE L1 3584 4126 -2020 257 250 67 96 chr3 120654622 120654830 -106869748 + L2 LINE L2 321 522 -2792 946 255 37 0 chr3 120655227 120655443 -106869135 + MER58A DNA MER1_type 1 224 0 325 290 21 11 chr3 120655463 120655556 -106869022 + MER5A DNA MER1_type 13 106 -83 1670 182 41 24 chr3 120655709 120656078 -106868500 + THE1C LTR MaLR 1 375 0 290 227 0 8 chr3 120656374 120656636 -106867942 + (TA)n Simple_repeat Simple_repeat 1 259 0 404 165 35 0 chr3 120656652 120656737 -106867841 - L1M1 LINE L1 -512 5791 5704 328 320 39 0 chr3 120656880 120656983 -106867595 + MIR SINE MIR 156 262 0 364 295 32 0 chr3 120658077 120658172 -106866406 + MIR SINE MIR 49 146 -116 3702 184 41 3 chr3 120658431 120659132 -106865446 + MER44D DNA MER2_type 6 605 0 1600 192 25 22 chr3 120659299 120659663 -106864915 + MER47A DNA MER2_type 2 366 0 1366 140 10 0 chr3 120660248 120660448 -106864130 + AluSg/x SINE Alu 102 303 -9 433 318 41 29 chr3 120660766 120660936 -106863642 - MIR SINE MIR -70 192 21 1284 249 43 47 chr3 120661330 120661799 -106862779 + MLT1C LTR MaLR 1 467 0 474 290 102 30 chr3 120662127 120662365 -106862213 - MIR SINE MIR -16 246 4 2931 171 29 11 chr3 120665265 120665820 -106858758 + Tigger2 DNA MER2_type 2139 2703 -15 420 156 0 0 chr3 120666085 120666175 -106858403 + G-rich Low_complexity Low_complexity 1 90 0 291 241 0 0 chr3 120666190 120666273 -106858305 + G-rich Low_complexity Low_complexity 1 83 0 207 0 0 0 chr3 120666637 120666660 -106857918 + (A)n Simple_repeat Simple_repeat 1 23 0 25 51 0 0 chr3 120667869 120667908 -106856670 + AT_rich Low_complexity Low_complexity 1 39 0 369 0 0 0 chr3 120668021 120668062 -106856516 + (GGAA)n Simple_repeat Simple_repeat 1 41 0 469 251 110 21 chr3 120671339 120671530 -106853048 + MIR SINE MIR 47 254 -8 290 299 62 31 chr3 120672145 120672242 -106852336 + MIR SINE MIR 38 137 -71 373 287 43 9 chr3 120673359 120673474 -106851104 + MIR SINE MIR 33 151 -57 218 232 0 43 chr3 120674334 120674403 -106850175 + (CAGAGA)n Simple_repeat Simple_repeat 4 69 0 796 208 0 24 chr3 120674474 120674642 -106849936 + AluSg/x SINE Alu 128 291 -21 269 274 19 126 chr3 120674703 120674966 -106849612 - L1ME LINE L1 -420 5701 5467 224 231 19 0 chr3 120675577 120675629 -106848949 + CT-rich Low_complexity Low_complexity 3 55 0 27 29 0 0 chr3 120676237 120676271 -106848307 + AT_rich Low_complexity Low_complexity 1 34 0 203 171 98 0 chr3 120676652 120676693 -106847885 - MIR SINE MIR -8 254 210 2488 41 3 0 chr3 120676909 120677204 -106847374 + AluY SINE Alu 1 296 -15 320 254 30 0 chr3 120677570 120677637 -106846941 - L1MDb LINE L1 -6332 77 9 2457 61 0 0 chr3 120677921 120678215 -106846363 - AluY SINE Alu -15 296 3 1383 239 39 8 chr3 120678972 120679332 -106845246 - MLT1A2 LTR MaLR 0 374 4 256 163 23 0 chr3 120680019 120680062 -106844516 - Zaphod DNA AcHobo -10 4021 3978 2039 110 31 0 chr3 120681944 120682235 -106842343 + AluSx SINE Alu 1 300 -12 770 85 8 17 chr3 120682781 120682920 -106841658 + L1PA8 LINE L1 6054 6172 0 207 286 11 44 chr3 120683214 120683305 -106841273 + MIR SINE MIR 121 208 -54 1854 179 46 0 chr3 120683750 120684097 -106840481 - MLT1A1 LTR MaLR 0 365 3 320 304 64 1 chr3 120684121 120684237 -106840341 + MIR SINE MIR 36 155 -53 24 32 0 0 chr3 120684422 120684453 -106840125 + AT_rich Low_complexity Low_complexity 1 31 0 204 200 0 0 chr3 120685075 120685110 -106839468 + (TTAGGG)n Simple_repeat Simple_repeat 2 36 0 7966 80 8 2 chr3 120685132 120686183 -106838395 + MER11C LTR ERVK 1 1057 -14 423 320 41 0 chr3 120687986 120688133 -106836445 - L3b LINE CR1 -329 1254 1102 1160 160 16 0 chr3 120688872 120689060 -106835518 - Tigger4(Zombi) DNA MER2_type -2540 191 1 23 33 0 0 chr3 120690829 120690859 -106833719 + AT_rich Low_complexity Low_complexity 1 30 0 336 274 62 18 chr3 120690906 120691019 -106833559 - MIR SINE MIR -114 148 31 667 263 138 42 chr3 120691146 120691684 -106832894 - MLT1H1 LTR MaLR 0 555 1 21 57 0 0 chr3 120691926 120691961 -106832617 + AT_rich Low_complexity Low_complexity 1 35 0 1381 198 3 51 chr3 120691966 120692279 -106832299 + AluJb SINE Alu 5 302 -10 618 211 44 59 chr3 120692542 120692746 -106831832 + AluJb SINE Alu 104 304 -8 191 312 0 39 chr3 120692904 120692981 -106831597 + MIR SINE MIR 185 258 -4 2837 214 53 2 chr3 120693204 120693824 -106830754 - MER82 DNA MER2_type -1 652 1 1841 206 44 27 chr3 120694001 120694481 -106830097 + L1PB4 LINE L1 4888 5375 -771 * 2048 140 25 12 chr3 120694468 120694967 -106829611 + L1MA3 LINE L1 3299 3802 -3763 12461 177 29 14 chr3 120695030 120698309 -106826269 + L1MA3 LINE L1 4040 7362 -362 1372 100 84 8 chr3 120698330 120698579 -106825999 + L1MA3 LINE L1 7452 7719 -5 3797 133 11 12 chr3 120698587 120698737 -106825841 + L1PB4 LINE L1 5352 5501 -655 2297 174 24 7 chr3 120698737 120699156 -106825422 - MSTB LTR MaLR 0 426 1 3797 133 11 12 chr3 120699156 120699643 -106824935 + L1PB4 LINE L1 5501 5988 -168 220 406 89 0 chr3 120700118 120700241 -106824337 - L2 LINE L2 -1 3271 3138 206 366 12 7 chr3 120700406 120700424 -106824154 - MER5A DNA MER1_type -42 136 120 582 253 145 6 chr3 120700424 120700590 -106823988 - MER5A DNA MER1_type 0 189 1 206 366 12 7 chr3 120700590 120700688 -106823890 - MER5A DNA MER1_type -58 120 21 199 286 122 0 chr3 120701031 120701080 -106823498 - L2 LINE L2 -12 3260 3206 4976 133 11 13 chr3 120701408 120702202 -106822376 + L1PA16 LINE L1 5365 6157 -9 2249 120 0 16 chr3 120703345 120703662 -106820916 + AluSx SINE Alu 1 312 0 26 0 0 0 chr3 120703908 120703934 -106820644 + AT_rich Low_complexity Low_complexity 1 26 0 672 314 12 21 chr3 120704473 120704715 -106819863 + MIR SINE MIR 18 257 -5 2201 214 50 54 chr3 120704717 120705106 -106819472 - MLT1E1 LTR MaLR -1 653 264 2052 121 24 0 chr3 120705106 120705403 -106819175 - AluSx SINE Alu -8 304 1 2201 214 50 54 chr3 120705403 120705424 -106819154 - MLT1E1 LTR MaLR -390 264 244 2059 108 0 37 chr3 120705424 120705720 -106818858 - AluSg SINE Alu -25 285 1 2201 214 50 54 chr3 120705720 120705961 -106818617 - MLT1E1 LTR MaLR -410 244 3 34 24 0 0 chr3 120705965 120706006 -106818572 + AT_rich Low_complexity Low_complexity 1 41 0 1688 192 0 3 chr3 120706033 120706320 -106818258 + AluJb SINE Alu 1 286 -26 2124 179 14 3 chr3 120706985 120707337 -106817241 + LTR18A LTR ERVL 1 356 -1 2151 129 0 3 chr3 120708319 120708622 -106815956 - AluSq SINE Alu -11 302 1 1825 216 23 59 chr3 120708672 120709196 -106815382 + MLT1D LTR MaLR 1 505 0 371 310 98 44 chr3 120709459 120709662 -106814916 + MIR SINE MIR 48 261 -1 2205 107 7 0 chr3 120709841 120710139 -106814439 + AluSx SINE Alu 1 300 -12 1345 238 90 28 chr3 120713865 120714375 -106810203 - L1ME2 LINE L1 -106 6058 5495 309 185 0 0 chr3 120714408 120714473 -106810105 + (TA)n Simple_repeat Simple_repeat 2 66 0 3356 78 13 9 chr3 120714767 120715218 -106809360 + MLT2A2 LTR ERVL 1 453 0 434 277 40 14 chr3 120715689 120715837 -106808741 - LTR41 LTR ERVL -604 169 18 200 302 188 21 chr3 120715864 120715960 -106808618 - MIR SINE MIR -150 112 1 504 48 0 0 chr3 120716948 120717011 -106807567 + (TG)n Simple_repeat Simple_repeat 1 63 0 2367 176 31 43 chr3 120717322 120717839 -106806739 - MER67D LTR ERV1 0 514 4 270 81 0 0 chr3 120717840 120717877 -106806701 + (TAG)n Simple_repeat Simple_repeat 1 37 0 218 234 47 16 chr3 120718211 120718275 -106806303 + MIR SINE MIR 161 226 -36 361 158 0 0 chr3 120720286 120720370 -106804208 - AluJ/FRAM SINE Alu 0 309 226 1781 185 0 0 chr3 120720372 120720669 -106803909 - AluJb SINE Alu -15 297 1 506 276 133 10 chr3 120721251 120721544 -106803034 + L1MC4 LINE L1 5808 6136 -1906 2396 194 60 4 chr3 120721555 120722087 -106802491 + L1MD3 LINE L1 7434 7995 0 319 341 22 29 chr3 120722703 120722841 -106801737 - MIR3 SINE MIR -21 187 51 2310 220 47 19 chr3 120723362 120723958 -106800620 + MER90 LTR ERV1 2 614 0 394 105 0 53 chr3 120723981 120724057 -106800521 + L1PA15 LINE L1 6093 6164 -1 248 0 31 0 chr3 120724164 120724196 -106800382 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2021 125 13 3 chr3 120724198 120724503 -106800075 + AluSx SINE Alu 4 311 -1 571 146 0 0 chr3 120725192 120725274 -106799304 - L1P3 LINE L1 -6372 89 8 1255 102 16 0 chr3 120725275 120725462 -106799116 + L1PA7 LINE L1 5965 6154 0 3966 122 8 29 chr3 120726376 120726818 -106797760 - MER39B LTR ERV1 -2 651 201 270 26 26 0 chr3 120726818 120726856 -106797722 + (TTTTG)n Simple_repeat Simple_repeat 2 170 0 2129 123 0 0 chr3 120726856 120727140 -106797438 - AluSq SINE Alu -1 321 1 3966 122 8 29 chr3 120727140 120727361 -106797217 - MER39B LTR ERV1 -450 203 1 809 288 34 52 chr3 120727375 120727642 -106796936 - MIR SINE MIR 0 262 1 2502 64 0 0 chr3 120729684 120729982 -106794596 - AluSc SINE Alu -11 298 1 2217 106 3 10 chr3 120730023 120730334 -106794244 - AluSc SINE Alu 0 309 1 24 53 0 0 chr3 120731552 120731590 -106792988 + AT_rich Low_complexity Low_complexity 1 38 0 19868 170 56 10 chr3 120731713 120736125 -106788453 + L1PA16 LINE L1 13 4629 -2936 258 32 0 0 chr3 120736181 120736212 -106788366 + (T)n Simple_repeat Simple_repeat 1 31 0 5002 163 18 28 chr3 120736496 120737084 -106787494 + L1PA16 LINE L1 6148 6741 -844 1824 113 27 3 chr3 120737084 120737385 -106787193 + L1MA2 LINE L1 5997 6304 0 5002 163 18 28 chr3 120737385 120738240 -106786338 + L1PA16 LINE L1 6741 7585 0 1180 193 104 79 chr3 120739038 120739530 -106785048 - LTR24B LTR ERV1 -7 569 66 3017 273 109 40 chr3 120739720 120740875 -106783703 + L1MEc LINE L1 660 1733 -4482 2128 102 44 0 chr3 120740875 120741169 -106783409 + AluSc SINE Alu 1 307 -2 3017 273 109 40 chr3 120741169 120743481 -106781097 + L1MEc LINE L1 1733 4358 -1857 1698 176 69 32 chr3 120743481 120743677 -106780901 - MLT1B LTR MaLR 0 390 203 2316 102 7 0 chr3 120743677 120743981 -106780597 - AluSq SINE Alu -7 306 1 1698 176 69 32 chr3 120743981 120744160 -106780418 - MLT1B LTR MaLR -187 203 1 3017 273 109 40 chr3 120744160 120744327 -106780251 + L1MEc LINE L1 4358 4512 -1703 959 248 54 33 chr3 120744337 120744603 -106779975 + L1ME2 LINE L1 5817 6094 -70 2100 98 33 0 chr3 120744603 120744913 -106779665 + AluSx SINE Alu 1 319 0 959 248 54 33 chr3 120744913 120744976 -106779602 + L1ME2 LINE L1 6094 6154 -10 342 0 0 0 chr3 120744976 120745014 -106779564 + (TG)n Simple_repeat Simple_repeat 2 39 0 423 319 29 81 chr3 120745053 120745152 -106779426 + MIR SINE MIR 3 106 -156 1452 115 60 0 chr3 120745152 120745369 -106779209 - MER30 DNA MER1_type 0 230 1 423 319 29 81 chr3 120745369 120745542 -106779036 + MIR SINE MIR 106 261 -1 252 314 48 9 chr3 120745741 120745846 -106778732 + MIR SINE MIR 154 262 0 3854 175 21 9 chr3 120747127 120748442 -106776136 - L1PA16 LINE L1 -9 6157 4652 948 245 23 23 chr3 120748874 120749184 -106775394 - LTR37A LTR ERV1 -3 423 114 1981 109 58 4 chr3 120749318 120749593 -106774985 + AluSc SINE Alu 1 290 -19 272 305 149 90 chr3 120750624 120751067 -106773511 - L2 LINE L2 0 3313 2845 988 272 90 30 chr3 120751289 120751673 -106772905 - MLT1J LTR MaLR -45 466 52 412 82 0 196 chr3 120751673 120751770 -106772808 - MADE1 DNA Mariner 0 80 3 988 272 90 30 chr3 120751770 120751819 -106772759 - MLT1J LTR MaLR -459 52 7 344 339 16 7 chr3 120751891 120752027 -106772551 + MIR SINE MIR 19 154 -70 516 213 175 38 chr3 120753804 120753910 -106770668 + MIR SINE MIR 16 106 -156 2411 123 5 14 chr3 120753910 120754277 -106770301 - THE1B LTR MaLR 0 364 1 516 213 175 38 chr3 120754277 120754330 -106770248 + MIR SINE MIR 106 197 -65 204 330 102 11 chr3 120754989 120755077 -106769501 - L2 LINE L2 -55 3217 3122 260 355 0 65 chr3 120755108 120755246 -106769332 - L2 LINE L2 -240 3032 2904 246 81 0 0 chr3 120755697 120755734 -106768844 + (CATA)n Simple_repeat Simple_repeat 1 37 0 612 272 72 10 chr3 120757135 120757330 -106767248 - MIR SINE MIR 0 262 56 302 355 114 47 chr3 120758794 120759135 -106765443 - L2 LINE L2 -4 3268 2905 442 277 85 23 chr3 120759433 120759610 -106764968 - L2 LINE L2 -4 3309 3122 744 314 66 50 chr3 120760081 120760645 -106763933 - L1MCc LINE L1 -5827 596 24 593 163 19 50 chr3 120760764 120760924 -106763654 + L1MA7 LINE L1 6137 6291 0 21 36 0 0 chr3 120760924 120760952 -106763626 + AT_rich Low_complexity Low_complexity 1 28 0 6015 184 149 38 chr3 120762814 120763243 -106761335 + MER52A LTR ERV1 1 381 -1374 1983 149 39 33 chr3 120763243 120763605 -106760973 - THE1B LTR MaLR 0 364 1 6015 184 149 38 chr3 120763605 120764689 -106759889 + MER52A LTR ERV1 381 1755 0 1907 146 67 17 chr3 120764877 120765234 -106759344 - THE1C LTR MaLR 0 375 1 4509 160 13 28 chr3 120766190 120766979 -106757599 + LTR39 LTR ERV1 5 781 -2 377 238 12 101 chr3 120767283 120767381 -106757197 + MLT1K LTR MaLR 325 403 -185 622 222 90 16 chr3 120767381 120767570 -106757008 - MER3 DNA MER1_type -2 207 5 377 238 12 101 chr3 120767570 120767639 -106756939 + MLT1K LTR MaLR 403 477 -111 2759 193 99 10 chr3 120767947 120768554 -106756024 - MER67B LTR ERV1 0 661 1 408 314 90 0 chr3 120768599 120768755 -106755823 - MIR SINE MIR -73 189 20 192 40 0 0 chr3 120770137 120770162 -106754416 + (CA)n Simple_repeat Simple_repeat 1 25 0 221 269 77 0 chr3 120770907 120770959 -106753619 + L2 LINE L2 3217 3272 0 800 309 27 30 chr3 120771172 120771508 -106753070 - MLT1J2 LTR MaLR -8 442 108 343 312 74 25 chr3 120771568 120771770 -106752808 - L2 LINE L2 -575 2739 2528 606 250 58 17 chr3 120773058 120773230 -106751348 - MIR SINE MIR -71 191 13 236 292 0 0 chr3 120774055 120774120 -106750458 - LTR16A LTR ERVL -5 445 381 3003 141 6 20 chr3 120774127 120774631 -106749947 - LOR1a LTR ERV1 0 497 1 693 108 0 20 chr3 120774631 120774733 -106749845 - LOR1a-int LTR ERV1 0 8120 8021 1501 152 95 13 chr3 120774790 120775114 -106749464 - LOR1a-int LTR ERV1 -595 6163 3777 337 157 56 22 chr3 120775117 120775206 -106749372 - LOR1a-int LTR ERV1 -1911 4687 4596 10873 113 64 41 chr3 120775421 120776669 -106747909 - LOR1a-int LTR ERV1 -4342 3778 2560 462 18 0 0 chr3 120776669 120776724 -106747854 + (CA)n Simple_repeat Simple_repeat 2 56 0 10873 113 64 41 chr3 120776724 120776808 -106747770 - LOR1a-int LTR ERV1 -5560 2560 2479 2237 131 0 0 chr3 120776808 120777113 -106747465 + AluSx SINE Alu 1 305 -7 10873 113 64 41 chr3 120777113 120777402 -106747176 - LOR1a-int LTR ERV1 -5641 2479 2198 2380 69 3 0 chr3 120777402 120777705 -106746873 - AluY SINE Alu -7 304 1 10873 113 64 41 chr3 120777705 120778146 -106746432 - LOR1a-int LTR ERV1 -5922 2198 1668 1219 62 0 0 chr3 120778267 120778411 -106746167 - AluY SINE Alu -167 144 1 9514 109 36 9 chr3 120778417 120779960 -106744618 - LOR1a-int LTR ERV1 -6010 2110 527 274 196 0 0 chr3 120779995 120780041 -106744537 - 5S rRNA rRNA -74 47 2 2732 173 9 0 chr3 120780117 120780562 -106744016 - LOR1a-int LTR ERV1 -7670 450 2 3112 138 16 6 chr3 120780563 120781055 -106743523 - LOR1a LTR ERV1 0 497 1 1989 121 0 3 chr3 120781057 120781372 -106743206 - AluSg SINE Alu 0 314 1 267 311 57 0 chr3 120781396 120781502 -106743076 - LTR16A LTR ERVL -109 341 230 251 191 15 0 chr3 120781533 120781601 -106742977 + (TA)n Simple_repeat Simple_repeat 2 70 0 2533 65 3 3 chr3 120781629 120781937 -106742641 - AluSp SINE Alu -4 309 2 25 90 0 0 chr3 120782015 120782082 -106742496 + AT_rich Low_complexity Low_complexity 1 67 0 203 186 17 34 chr3 120782404 120782463 -106742115 + A-rich Low_complexity Low_complexity 2 59 0 21 0 0 0 chr3 120782670 120782691 -106741887 + AT_rich Low_complexity Low_complexity 1 21 0 238 28 0 0 chr3 120785636 120785672 -106738906 - Alu SINE Alu -4 295 260 309 347 86 66 chr3 120786715 120787088 -106737490 - L2 LINE L2 -84 3188 2824 1050 282 72 19 chr3 120787088 120787464 -106737114 + MSTD LTR MaLR 1 396 0 309 347 86 66 chr3 120787464 120787940 -106736638 - L2 LINE L2 -448 2824 2323 1720 208 108 19 chr3 120788233 120788694 -106735884 + MLT1D LTR MaLR 3 504 -1 1237 174 24 0 chr3 120788843 120789055 -106735523 - L1MDa LINE L1 -6269 271 55 2193 73 0 60 chr3 120789351 120789665 -106734913 - AluY SINE Alu -16 295 1 1738 161 46 0 chr3 120790281 120790561 -106734017 + AluSx SINE Alu 1 293 -19 2402 90 0 0 chr3 120792183 120792483 -106732095 + AluSq SINE Alu 1 300 -13 884 205 9 18 chr3 120792549 120792778 -106731800 + L1MA7 LINE L1 6065 6291 0 343 189 0 22 chr3 120792847 120792937 -106731641 + GA-rich Low_complexity Low_complexity 4 91 0 232 339 8 8 chr3 120793171 120793298 -106731280 + HAL1 LINE L1 1441 1567 -940 335 280 72 70 chr3 120793730 120794255 -106730323 + L1MEd LINE L1 623 1148 -4971 695 298 65 60 chr3 120794277 120795605 -106728973 + L1 LINE L1 3366 4701 -1445 2456 84 0 0 chr3 120795609 120795920 -106728658 + AluSq SINE Alu 1 311 -2 474 254 32 8 chr3 120796085 120796211 -106728367 + MER67C LTR ERV1 212 340 -370 10522 160 12 32 chr3 120796234 120797464 -106727114 + L1PA8 LINE L1 638 1815 -4331 2073 142 0 3 chr3 120797464 120797766 -106726812 - AluSx SINE Alu -11 301 1 10522 160 12 32 chr3 120797766 120798538 -106726040 + L1PA8 LINE L1 1815 2601 -3545 17595 104 12 0 chr3 120798543 120801966 -106722612 + L1PA8 LINE L1 2746 6172 0 321 313 109 7 chr3 120802003 120802293 -106722285 + L1 LINE L1 4734 5092 -1054 1307 95 16 0 chr3 120804178 120804367 -106720211 + L1PB1 LINE L1 5957 6148 -3 329 390 67 25 chr3 120806260 120806619 -106717959 - L2 LINE L2 -11 3261 2888 1604 209 50 44 chr3 120806676 120807012 -106717566 - MER31B LTR ERV1 -16 645 107 2320 85 3 28 chr3 120807012 120807330 -106717248 + AluSg SINE Alu 1 310 0 1604 209 50 44 chr3 120807330 120807423 -106717155 - MER31B LTR ERV1 -554 107 16 591 237 56 28 chr3 120807505 120807754 -106716824 + L1MEd LINE L1 895 1150 -4969 818 266 83 14 chr3 120807796 120808085 -106716493 + MLT1E LTR MaLR 222 530 -63 196 28 83 0 chr3 120809292 120809328 -106715250 + T-rich Low_complexity Low_complexity 2 40 0 1959 137 3 7 chr3 120809331 120809616 -106714962 - AluSx SINE Alu -28 284 1 869 229 64 14 chr3 120809977 120810195 -106714383 - MLT1C LTR MaLR 0 467 239 233 202 48 48 chr3 120810240 120810324 -106714254 - MLT1C LTR MaLR -439 187 104 214 195 0 0 chr3 120810627 120810668 -106713910 + (TTA)n Simple_repeat Simple_repeat 1 41 0 420 302 142 13 chr3 120810890 120811115 -106713463 + HAL1 LINE L1 1390 1643 -864 2729 13 0 0 chr3 120811162 120811461 -106713117 + AluY SINE Alu 1 299 -12 266 267 53 62 chr3 120811744 120811984 -106712594 + LTR48B LTR ERV1 11 432 -275 302 197 5 58 chr3 120811987 120812009 -106712569 + (TA)n Simple_repeat Simple_repeat 1 23 -155 189 0 0 0 chr3 120812009 120812030 -106712548 + (CA)n Simple_repeat Simple_repeat 2 22 0 302 197 5 58 chr3 120812030 120812195 -106712383 + (TA)n Simple_repeat Simple_repeat 23 178 0 203 88 29 0 chr3 120812231 120812265 -106712313 + (TATATG)n Simple_repeat Simple_repeat 3 37 0 350 98 52 52 chr3 120812321 120812495 -106712083 + (TA)n Simple_repeat Simple_repeat 1 174 0 375 288 28 14 chr3 120812495 120812633 -106711945 - MIR SINE MIR -55 153 25 487 320 53 14 chr3 120812867 120813148 -106711430 + L1ME3A LINE L1 5595 5886 -284 24 53 0 0 chr3 120813174 120813212 -106711366 + AT_rich Low_complexity Low_complexity 1 38 0 698 238 74 13 chr3 120813440 120813686 -106710892 - MER39 LTR ERV1 0 687 428 36 0 0 0 chr3 120813734 120813770 -106710808 + AT_rich Low_complexity Low_complexity 1 36 0 2034 109 55 0 chr3 120813770 120814045 -106710533 - AluSx SINE Alu -22 290 1 2445 65 3 13 chr3 120814407 120814713 -106709865 - AluSp SINE Alu -10 303 1 336 400 0 11 chr3 120814714 120814904 -106709674 - MER5A DNA MER1_type 0 189 2 2535 68 0 0 chr3 120816412 120816719 -106707859 - AluY SINE Alu -4 307 1 2214 86 0 58 chr3 120817344 120817669 -106706909 - AluY SINE Alu -5 306 1 339 237 0 13 chr3 120817966 120818042 -106706536 - MER94 DNA DNA -59 75 1 762 295 52 16 chr3 120818057 120818308 -106706270 - MIR SINE MIR 0 262 3 242 269 317 0 chr3 120818360 120818464 -106706114 - MIR SINE MIR -108 154 18 2165 125 0 6 chr3 120819313 120819625 -106704953 + AluSg SINE Alu 1 310 0 249 33 0 0 chr3 120820142 120820172 -106704406 + (GGAA)n Simple_repeat Simple_repeat 4 33 0 371 245 122 20 chr3 120820173 120820369 -106704209 + L1 LINE L1 4396 4611 -1535 1966 124 15 113 chr3 120820372 120821108 -106703470 - L1P4 LINE L1 -560 5606 4906 243 242 0 0 chr3 120821137 120821199 -106703379 + CT-rich Low_complexity Low_complexity 4 65 0 3415 124 20 9 chr3 120821287 120821827 -106702751 + L1PA15 LINE L1 5618 6163 -2 1002 223 28 0 chr3 120821873 120822084 -106702494 - MER34 LTR ERV1 -325 217 1 2609 159 61 0 chr3 120822084 120822573 -106702005 + L1MA9 LINE L1 5789 6307 -5 646 288 101 30 chr3 120823630 120823998 -106700580 + HAL1 LINE L1 1301 1694 -813 788 135 23 8 chr3 120824003 120824136 -106700442 - MER88 LTR ERVL 0 464 330 9532 200 45 20 chr3 120824162 120826086 -106698492 + L1MA10 LINE L1 2752 4801 -1533 2322 108 0 0 chr3 120826086 120826383 -106698195 - AluSg SINE Alu -13 297 1 9532 200 45 20 chr3 120826383 120827955 -106696623 + L1MA10 LINE L1 4801 6331 -3 444 274 50 82 chr3 120828206 120828561 -106696017 + L1MC/D LINE L1 5220 5571 -747 5489 30 1 1 chr3 120828736 120829742 -106694836 + L1P1 LINE L1 4700 5705 -450 480 107 155 10 chr3 120829970 120830073 -106694505 + MIR SINE MIR 66 183 -79 2403 51 3 19 chr3 120830218 120830531 -106694047 - AluY SINE Alu -3 308 1 1337 202 75 33 chr3 120831983 120832215 -106692363 + L1MC/D LINE L1 4800 5021 -1285 2055 67 0 30 chr3 120832215 120832485 -106692093 + AluY SINE Alu 1 262 -49 1337 202 75 33 chr3 120832485 120832994 -106691584 + L1MC/D LINE L1 5021 5563 -743 384 333 33 25 chr3 120833010 120833253 -106691325 + L1PA14 LINE L1 1667 1911 -5670 * 10655 177 13 7 chr3 120833250 120834807 -106689771 + L1PA14 LINE L1 4295 5841 -1758 1959 121 124 3 chr3 120834807 120835130 -106689448 + THE1B LTR MaLR 1 362 -2 10655 177 13 7 chr3 120835130 120836800 -106687778 + L1PA14 LINE L1 5841 7534 -65 1891 111 4 0 chr3 120838604 120838856 -106685722 + AluSx SINE Alu 1 253 -59 806 67 30 0 chr3 120838863 120838998 -106685580 + (TAGA)n Simple_repeat Simple_repeat 2 140 0 25 0 0 0 chr3 120844394 120844419 -106680159 + AT_rich Low_complexity Low_complexity 1 25 0 271 149 21 0 chr3 120846262 120846309 -106678269 + L1PA14 LINE L1 7543 7590 -9 30 69 0 0 chr3 120847367 120847425 -106677153 + AT_rich Low_complexity Low_complexity 1 58 0 600 251 163 17 chr3 120847556 120847966 -106676612 + HAL1 LINE L1 992 1461 -1046 247 351 15 0 chr3 120848197 120848331 -106676247 + LTR16C LTR ERVL 354 489 -2 308 237 18 26 chr3 120848423 120848537 -106676041 + MLT1-int LTR MaLR 33 145 -1226 666 235 56 0 chr3 120848589 120848751 -106675827 - MLT1A2 LTR MaLR -16 374 204 346 254 37 43 chr3 120848848 120849093 -106675485 + MER41B LTR ERV1 54 430 -205 800 192 70 79 chr3 120849229 120849443 -106675135 - MLT1A2 LTR MaLR -178 212 1 834 183 21 112 chr3 120850042 120850196 -106674382 - MER20 DNA MER1_type 0 219 93 2291 109 0 10 chr3 120850196 120850508 -106674070 - AluSx SINE Alu -3 309 1 834 183 21 112 chr3 120850508 120850594 -106673984 - MER20 DNA MER1_type -126 93 1 274 292 100 8 chr3 120850783 120850913 -106673665 + MLT1F1 LTR MaLR 35 176 -379 3155 200 143 97 chr3 120850945 120852152 -106672426 + MER52A LTR ERV1 16 1278 0 363 236 81 51 chr3 120852170 120852467 -106672111 + MLT1F1 LTR MaLR 154 558 -9 2061 116 76 20 chr3 120852762 120853117 -106671461 - THE1C LTR MaLR 0 375 1 629 298 39 33 chr3 120853340 120853672 -106670906 + LTR16C LTR ERVL 158 491 0 1234 234 95 46 chr3 120854222 120854407 -106670171 - L1ME1 LINE L1 -22 6144 5969 2044 110 3 79 chr3 120854407 120854735 -106669843 - AluSx SINE Alu -9 303 1 1234 234 95 46 chr3 120854735 120855421 -106669157 - L1ME1 LINE L1 -197 5969 5198 865 199 38 142 chr3 120855733 120856079 -106668499 + MER52A LTR ERV1 1040 1349 -406 255 252 0 45 chr3 120856069 120856180 -106668398 + LTR28 LTR ERV1 586 691 -329 * 417 142 24 126 chr3 120856190 120856229 -106668349 + MER52A LTR ERV1 1216 1257 -498 243 0 0 0 chr3 120856229 120856256 -106668322 + (G)n Simple_repeat Simple_repeat 1 27 0 417 142 24 126 chr3 120856256 120856343 -106668235 + MER52A LTR ERV1 1257 1329 -426 2733 201 38 0 chr3 120856345 120856946 -106667632 - MLT-int LTR MaLR -942 793 170 502 202 0 20 chr3 120856950 120857049 -106667529 - MSTC LTR MaLR -331 97 1 21 36 0 0 chr3 120858668 120858696 -106665882 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr3 120860158 120860189 -106664389 + AT_rich Low_complexity Low_complexity 1 31 0 246 317 42 7 chr3 120860669 120860811 -106663767 + L1ME LINE L1 29 175 -5944 306 130 19 0 chr3 120861057 120861111 -106663467 - MLT1A1 LTR MaLR 0 365 311 1067 240 11 0 chr3 120861112 120861379 -106663199 - L1ME1 LINE L1 -1342 4804 4535 243 317 12 18 chr3 120861479 120861646 -106662932 + L1P LINE L1 3607 3772 -2374 1600 259 119 8 chr3 120861665 120862287 -106662291 - L1ME1 LINE L1 -1617 4529 3839 2343 162 18 27 chr3 120862289 120862778 -106661800 + L1MC1 LINE L1 5841 6325 -8 444 276 138 78 chr3 120862783 120862889 -106661689 + L1ME LINE L1 3078 3176 -2953 2367 112 0 0 chr3 120862889 120863201 -106661377 + AluSx SINE Alu 1 312 0 444 276 138 78 chr3 120863201 120863557 -106661021 + L1ME LINE L1 3176 3568 -2561 469 295 88 21 chr3 120863781 120864682 -106659896 + L1ME LINE L1 3573 4574 -1555 275 264 26 31 chr3 120864858 120865051 -106659527 + L1ME LINE L1 5244 5435 -718 2781 60 126 0 chr3 120865553 120865951 -106658627 - LTR7 LTR ERV1 -2 448 1 2127 98 70 14 chr3 120865951 120866320 -106658258 - HERVH LTR ERV1 0 7713 7324 1292 134 19 0 chr3 120866320 120866536 -106658042 - HERVH LTR ERV1 -1894 5819 5600 4086 138 5 1 chr3 120866537 120867197 -106657381 - HERVH LTR ERV1 -2564 5149 4488 3225 109 0 6 chr3 120867199 120867704 -106656874 - HERVH LTR ERV1 -3720 3993 3492 862 140 7 0 chr3 120867694 120867844 -106656734 - HERVH LTR ERV1 -4423 3290 3140 * 18872 93 26 19 chr3 120867841 120870802 -106653776 - HERVH LTR ERV1 -4729 2984 1 2643 67 149 0 chr3 120870804 120871194 -106653384 - LTR7 LTR ERV1 -2 448 1 446 272 157 35 chr3 120871794 120872132 -106652446 - L2 LINE L2 -1314 2000 1622 202 378 70 33 chr3 120872129 120872558 -106652020 + L2 LINE L2 2313 2757 -557 * 1806 191 47 89 chr3 120872799 120873371 -106651207 + MLT1E2 LTR MaLR 1 548 -78 441 0 0 0 chr3 120874129 120874178 -106650400 + (CA)n Simple_repeat Simple_repeat 2 50 0 897 104 0 0 chr3 120874847 120874962 -106649616 + AluSq SINE Alu 126 240 -73 33 66 0 0 chr3 120874975 120875036 -106649542 + AT_rich Low_complexity Low_complexity 1 61 0 23 33 0 0 chr3 120875636 120875666 -106648912 + AT_rich Low_complexity Low_complexity 1 30 0 1223 204 36 18 chr3 120875710 120875990 -106648588 - L1MB1 LINE L1 0 6168 5884 419 260 160 59 chr3 120876186 120876405 -106648173 + MIR SINE MIR 18 258 -4 320 331 16 24 chr3 120876416 120876540 -106648038 + L2 LINE L2 3190 3312 -1 203 349 23 0 chr3 120876538 120876624 -106647954 - MIR SINE MIR -10 252 165 * 809 215 27 43 chr3 120876713 120876884 -106647694 - MLT1D LTR MaLR -2 503 336 240 35 0 0 chr3 120876884 120876913 -106647665 + (TTG)n Simple_repeat Simple_repeat 2 30 0 809 215 27 43 chr3 120876913 120876997 -106647581 - MLT1D LTR MaLR -169 336 252 340 194 0 31 chr3 120877067 120877165 -106647413 + L1 LINE L1 3266 3360 -2786 386 314 92 52 chr3 120877497 120877920 -106646658 - LTR16A LTR ERVL -9 441 2 2834 276 141 30 chr3 120879142 120880488 -106644090 + L2 LINE L2 1269 2763 -551 1179 168 28 14 chr3 120880489 120880532 -106644046 - MLT2C1 LTR ERVL 0 397 356 851 0 10 0 chr3 120880532 120880631 -106643947 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 1179 168 28 14 chr3 120880631 120880801 -106643777 - MLT2C1 LTR ERVL -41 356 181 2779 167 21 13 chr3 120880824 120881563 -106643015 + LTR1B LTR ERV1 1 826 0 801 191 13 0 chr3 120881565 120881717 -106642861 - MLT2C1 LTR ERVL -243 154 1 639 291 258 20 chr3 120881723 120882155 -106642423 + L2 LINE L2 2772 3301 -12 267 308 56 28 chr3 120882200 120882343 -106642235 + MIR SINE MIR 2 148 -114 1412 177 16 17 chr3 120882923 120883217 -106641361 - MER61B LTR ERV1 -37 388 1 1514 171 16 9 chr3 120884052 120884344 -106640234 - MER61B LTR ERV1 -37 388 1 21 36 0 0 chr3 120885194 120885222 -106639356 + AT_rich Low_complexity Low_complexity 1 28 0 208 143 0 0 chr3 120885532 120885567 -106639011 + (A)n Simple_repeat Simple_repeat 1 35 0 529 359 32 9 chr3 120885749 120885969 -106638609 - MIR SINE MIR -18 244 20 1517 134 11 18 chr3 120885992 120886143 -106638435 - L1MA4 LINE L1 -7 6293 6143 4638 146 27 22 chr3 120886143 120886922 -106637656 - LTR39 LTR ERV1 0 783 1 1517 134 11 18 chr3 120886922 120887047 -106637531 - L1MA4 LINE L1 -157 6143 6019 1498 120 13 8 chr3 120887048 120887282 -106637296 + L1MA4 LINE L1 5743 5977 -323 234 91 0 0 chr3 120887936 120887969 -106636609 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1860 202 102 28 chr3 120888183 120888653 -106635925 - MLT1D LTR MaLR 0 505 1 254 229 38 153 chr3 120888953 120889034 -106635544 + MIR SINE MIR 38 88 -174 2268 56 3 20 chr3 120889034 120889382 -106635196 + L1PA6 LINE L1 5856 6154 0 254 229 38 153 chr3 120889382 120889483 -106635095 + MIR SINE MIR 88 199 -63 2217 75 29 26 chr3 120889490 120889797 -106634781 + AluSc SINE Alu 1 308 -1 32 26 0 0 chr3 120890508 120890547 -106634031 + AT_rich Low_complexity Low_complexity 1 39 0 1837 164 10 0 chr3 120891777 120892076 -106632502 - AluJb SINE Alu -10 302 1 254 316 99 20 chr3 120892079 120892231 -106632347 - L2 LINE L2 -49 3264 3101 286 378 80 0 chr3 120892403 120892628 -106631950 - L2 LINE L2 -402 2912 2670 309 326 31 16 chr3 120892828 120892957 -106631621 + L2 LINE L2 3182 3312 -1 336 48 0 0 chr3 120893586 120893628 -106630950 + (CA)n Simple_repeat Simple_repeat 2 43 0 354 360 35 0 chr3 120893775 120893947 -106630631 + HAL1 LINE L1 1585 1762 -745 2344 95 3 0 chr3 120894177 120894481 -106630097 - AluSp SINE Alu -8 305 1 399 316 135 29 chr3 120894857 120895188 -106629390 + L1M4 LINE L1 2302 2707 -3439 231 36 0 0 chr3 120895188 120895216 -106629362 + (CA)n Simple_repeat Simple_repeat 1 28 0 399 316 135 29 chr3 120895216 120895396 -106629182 + L1M4 LINE L1 2707 2867 -3279 22 0 0 0 chr3 120895827 120895849 -106628729 + AT_rich Low_complexity Low_complexity 1 22 0 282 227 13 27 chr3 120895936 120896011 -106628567 + GA-rich Low_complexity Low_complexity 2 75 0 430 247 265 33 chr3 120896011 120896356 -106628222 - L2 LINE L2 -187 3126 2702 3995 191 37 73 chr3 120896363 120897924 -106626654 - L1MD1 LINE L1 -3 6633 5131 15646 26 2 0 chr3 120897941 120900569 -106624009 + L1PA3 LINE L1 3534 6166 0 2193 235 30 13 chr3 120900588 120901223 -106623355 - L1MD1 LINE L1 -1430 5110 4465 481 219 58 7 chr3 120901220 120901375 -106623203 + L1M4 LINE L1 3907 4069 -2077 * 8722 201 77 68 chr3 120901364 120902330 -106622248 - L1MD1 LINE L1 -3631 2909 1953 180 0 0 0 chr3 120902330 120902350 -106622228 + (C)n Simple_repeat Simple_repeat 1 20 0 8722 201 77 68 chr3 120902350 120903983 -106620595 - L1MD1 LINE L1 -4587 1953 269 246 105 0 0 chr3 120903983 120904021 -106620557 + (TTTTG)n Simple_repeat Simple_repeat 4 41 0 8722 201 77 68 chr3 120904021 120904293 -106620285 - L1MD1 LINE L1 -6271 269 1 595 285 179 13 chr3 120904473 120904775 -106619803 - L2 LINE L2 -776 2538 2187 7399 27 8 2 chr3 120906349 120907390 -106617188 + L1PA4 LINE L1 5106 6151 -4 379 238 12 0 chr3 120907496 120907580 -106616998 + MLT1G1 LTR MaLR 1 85 -510 624 297 153 68 chr3 120907597 120908496 -106616082 - L1M4 LINE L1 -1018 5128 4073 2176 106 106 0 chr3 120908496 120908825 -106615753 - THE1B LTR MaLR 0 364 1 624 297 153 68 chr3 120908825 120909275 -106615303 - L1M4 LINE L1 -2073 4073 3663 32 67 0 0 chr3 120909578 120909638 -106614940 + AT_rich Low_complexity Low_complexity 1 60 0 700 328 92 59 chr3 120909656 120910262 -106614316 - HAL1 LINE L1 -752 1755 1108 4678 168 35 6 chr3 120910262 120911102 -106613476 - MER6 DNA MER2_type 0 865 2 700 328 92 59 chr3 120911102 120911404 -106613174 - HAL1 LINE L1 -1399 1108 817 22 0 0 0 chr3 120911911 120911933 -106612645 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr3 120912164 120912193 -106612385 + AT_rich Low_complexity Low_complexity 1 29 0 186 309 73 52 chr3 120912314 120912450 -106612128 - MER5B DNA MER1_type -7 171 33 254 328 86 31 chr3 120912687 120912815 -106611763 - L3b LINE CR1 -93 1490 1356 2111 272 58 22 chr3 120913806 120914729 -106609849 - L1ME3A LINE L1 -21 6149 5195 1724 189 7 0 chr3 120914899 120915196 -106609382 - AluJb SINE Alu -5 307 9 382 254 103 6 chr3 120915280 120915445 -106609133 - L1ME3A LINE L1 -1843 4303 4123 305 284 37 67 chr3 120915511 120915645 -106608933 - L1ME3A LINE L1 -2178 3968 3839 896 191 6 0 chr3 120915659 120915837 -106608741 - L1MB7 LINE L1 -9 6175 5997 707 216 33 114 chr3 120916364 120916559 -106608019 - MIR SINE MIR 0 262 94 2271 113 3 0 chr3 120916559 120916870 -106607708 - AluSx SINE Alu 0 312 1 707 216 33 114 chr3 120916870 120916947 -106607631 - MIR SINE MIR -168 94 12 2307 93 7 0 chr3 120919422 120919722 -106604856 + AluSp SINE Alu 1 302 -11 750 304 19 27 chr3 120920443 120920703 -106603875 + MIR SINE MIR 5 262 0 180 331 69 23 chr3 120920748 120920878 -106603700 + L2 LINE L2 3173 3308 -5 191 283 0 0 chr3 120922049 120922102 -106602476 + L2 LINE L2 3020 3072 -241 525 297 40 0 chr3 120922242 120922390 -106602188 + MIR SINE MIR 2 155 -107 1831 153 54 17 chr3 120922447 120922800 -106601778 + MER47A DNA MER2_type 1 366 0 43007 32 21 1 chr3 120923355 120929386 -106595192 + L1PA2 LINE L1 1 6152 -3 231 159 167 24 chr3 120929418 120929544 -106595034 + L1M2 LINE L1 2674 2817 -4032 350 206 41 0 chr3 120929564 120929637 -106594941 + L1MA6 LINE L1 2236 2311 -4538 13530 175 45 22 chr3 120929670 120931895 -106592683 + L1MA6 LINE L1 2793 4964 -2038 2339 79 3 0 chr3 120931895 120932200 -106592378 + AluY SINE Alu 1 306 -5 13530 175 45 22 chr3 120932200 120933107 -106591471 + L1MA6 LINE L1 4964 5848 -1154 363 23 0 0 chr3 120933107 120933151 -106591427 + (CA)n Simple_repeat Simple_repeat 2 45 0 13530 175 45 22 chr3 120933151 120934125 -106590453 + L1MA6 LINE L1 5848 6984 -18 414 0 0 0 chr3 120934611 120934657 -106589921 + (TTA)n Simple_repeat Simple_repeat 2 47 0 2018 120 3 0 chr3 120934661 120934945 -106589633 - AluSq SINE Alu -28 285 1 206 316 63 0 chr3 120935309 120935388 -106589190 - L3b LINE CR1 -392 1191 1108 5380 78 97 1 chr3 120936306 120937060 -106587518 + LTR12 LTR ERV1 1 826 0 262 281 13 98 chr3 120937376 120937529 -106587049 + MIR SINE MIR 117 256 -6 259 267 172 0 chr3 120938271 120938387 -106586191 - MIR SINE MIR -83 179 44 2059 115 4 0 chr3 120938648 120938962 -106585616 - AluSx SINE Alu 0 317 3 221 308 165 0 chr3 120939265 120939356 -106585222 + L2 LINE L2 3156 3261 -11 2584 102 16 8 chr3 120939456 120939828 -106584750 - THE1C LTR MaLR 0 375 1 183 330 144 0 chr3 120940549 120940646 -106583932 - L2 LINE L2 -3 3269 3159 201 286 48 16 chr3 120941529 120941592 -106582986 - MIR SINE MIR -116 146 82 480 318 30 60 chr3 120941913 120942180 -106582398 + MIR SINE MIR 3 261 -1 239 301 12 0 chr3 120943900 120943983 -106580595 + T-rich Low_complexity Low_complexity 4 87 0 249 265 60 12 chr3 120943994 120944077 -106580501 - L1MC/D LINE L1 -2103 5705 5619 529 285 20 45 chr3 120945389 120945589 -106578989 - MER58A DNA MER1_type -3 221 27 212 383 2 5 chr3 120945658 120945750 -106578828 - MIR SINE MIR -63 145 55 405 133 0 0 chr3 120946939 120947014 -106577564 + (TC)n Simple_repeat Simple_repeat 2 76 0 216 135 0 0 chr3 120947268 120947305 -106577273 + (CA)n Simple_repeat Simple_repeat 1 37 0 1280 326 69 35 chr3 120947346 120948050 -106576528 + L1M2a LINE L1 401 1409 -6157 5014 237 25 16 chr3 120948232 120949672 -106574906 + L1M2a LINE L1 2097 3395 -4171 3755 28 0 59 chr3 120949768 120950263 -106574315 + L1PA3 LINE L1 5432 5897 -258 198 311 93 0 chr3 120950364 120950525 -106574053 - L2 LINE L2 -1261 2053 1878 209 200 233 17 chr3 120950639 120950699 -106573879 - L2 LINE L2 0 3272 3200 201 318 30 0 chr3 120950751 120950817 -106573761 - MER5A DNA MER1_type -6 183 116 244 253 88 11 chr3 120951014 120951105 -106573473 + L1ME2 LINE L1 90 187 -6018 330 255 9 38 chr3 120951826 120951932 -106572646 + L1ME2 LINE L1 2157 2259 -4137 492 239 100 29 chr3 120952031 120952270 -106572308 + L1ME2 LINE L1 2325 2580 -3635 513 309 55 62 chr3 120952456 120952874 -106571704 + HERV16 LTR ERVL 4558 4972 -24 314 87 0 0 chr3 120952874 120952920 -106571658 - MADE1 DNA Mariner 0 80 35 * 729 240 87 10 chr3 120952918 120953126 -106571452 + MLT1A1 LTR MaLR 142 365 0 2152 118 24 47 chr3 120953274 120953656 -106570922 + THE1C LTR MaLR 1 373 -2 416 219 35 41 chr3 120953688 120953837 -106570741 + L1ME2 LINE L1 4500 4649 -1566 1577 181 3 27 chr3 120953837 120954135 -106570443 - AluJo SINE Alu -21 291 1 416 219 35 41 chr3 120954135 120954154 -106570424 + L1ME2 LINE L1 4649 4667 -1548 22 88 0 0 chr3 120954359 120954416 -106570162 + AT_rich Low_complexity Low_complexity 1 57 0 563 306 46 19 chr3 120954674 120954890 -106569688 + MER31-int LTR ERV1 3839 4060 -876 1606 181 60 28 chr3 120954901 120955254 -106569324 - MLT1A1 LTR MaLR 0 365 2 533 204 39 0 chr3 120955481 120955584 -106568994 + U6 snRNA snRNA 1 107 0 473 130 10 80 chr3 120955585 120955624 -106568954 + L1MA5 LINE L1 2565 2605 -4244 2028 73 56 36 chr3 120955624 120955926 -106568652 + AluY SINE Alu 1 308 -3 473 130 10 80 chr3 120955926 120955986 -106568592 + L1MA5 LINE L1 2605 2657 -4192 13547 184 47 10 chr3 120956045 120958987 -106565591 + L1MA5 LINE L1 3068 6131 -743 460 212 10 20 chr3 120958980 120959079 -106565499 - L1MA5 LINE L1 -351 5949 5852 * 4604 156 19 14 chr3 120959079 120959934 -106564644 + L1MA5 LINE L1 6144 7002 0 1305 234 78 7 chr3 120960280 120960587 -106563991 - MER2 DNA MER2_type 0 345 17 2180 72 0 79 chr3 120960635 120960953 -106563625 + AluSg SINE Alu 1 293 -17 2311 230 66 42 chr3 120961017 120961275 -106563303 + L1ME2 LINE L1 5260 5510 -723 2352 86 3 0 chr3 120961275 120961578 -106563000 + AluY SINE Alu 1 304 -7 2311 230 66 42 chr3 120961578 120962214 -106562364 + L1ME2 LINE L1 5510 6176 -57 1684 256 113 43 chr3 120962214 120963201 -106561377 - L1M4 LINE L1 -1351 4795 3739 * 8068 215 44 25 chr3 120963199 120963261 -106561317 - L1MB1 LINE L1 -2 6166 6107 2093 129 3 3 chr3 120963261 120963570 -106561008 - AluSx SINE Alu -3 309 1 8068 215 44 25 chr3 120963570 120964317 -106560261 - L1MB1 LINE L1 -61 6107 5376 342 45 0 0 chr3 120964317 120964361 -106560217 + (TG)n Simple_repeat Simple_repeat 2 45 0 8068 215 44 25 chr3 120964361 120966413 -106558165 - L1MB1 LINE L1 -792 5376 3268 844 237 57 0 chr3 120966525 120966719 -106557859 + MLT1A1 LTR MaLR 161 365 0 1755 206 47 8 chr3 120966719 120967102 -106557476 + MLT1A1-int LTR MaLR 1 398 -1337 331 0 20 40 chr3 121017130 121017180 -106507398 + L1PA3 LINE L1 6104 6152 -3 270 320 127 13 chr3 121018928 121019078 -106505500 + MIR SINE MIR 20 186 -76 439 271 187 13 chr3 121019319 121019544 -106505034 + LTR16A LTR ERVL 25 288 -162 634 27 0 0 chr3 121019586 121019659 -106504919 + MLT2B1 LTR ERVL 1 73 -447 365 277 0 0 chr3 121019684 121019767 -106504811 + LTR16A LTR ERVL 358 440 -10 514 202 19 0 chr3 121021021 121021125 -106503453 + MER5A DNA MER1_type 7 112 -77 663 71 24 0 chr3 121021125 121021209 -106503369 + AluY SINE Alu 214 299 -12 389 200 80 0 chr3 121021210 121021285 -106503293 + MER5A DNA MER1_type 108 188 -1 24 0 0 0 chr3 121021294 121021318 -106503260 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr3 121021582 121021608 -106502970 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr3 121022414 121022436 -106502142 + AT_rich Low_complexity Low_complexity 1 22 0 468 211 197 26 chr3 121022518 121022670 -106501908 - MER4C LTR ERV1 0 465 288 30117 120 18 58 chr3 121022670 121024771 -106499807 + L1PA8 LINE L1 20 2203 -3969 2189 115 0 0 chr3 121024771 121025059 -106499519 - AluSc SINE Alu -18 291 4 30117 120 18 58 chr3 121025059 121029374 -106495204 + L1PA8 LINE L1 2203 6172 0 2178 115 0 10 chr3 121029379 121029692 -106494886 + AluSg SINE Alu 1 310 0 511 99 0 0 chr3 121029757 121029828 -106494750 - MER4A LTR ERV1 -238 426 356 2173 108 13 65 chr3 121029899 121030271 -106494307 - MER4A LTR ERV1 -311 353 1 1429 163 4 20 chr3 121030769 121031020 -106493558 + AluJb SINE Alu 52 298 -14 12396 204 29 19 chr3 121031028 121033009 -106491569 + L1PA13 LINE L1 967 2928 -4656 1960 159 7 3 chr3 121033009 121033311 -106491267 + AluSx SINE Alu 1 303 -9 12396 204 29 19 chr3 121033311 121033433 -106491145 + L1PA13 LINE L1 2928 3047 -4537 2221 118 3 0 chr3 121033433 121033722 -106490856 + AluSp SINE Alu 1 290 -23 12396 204 29 19 chr3 121033722 121035172 -106489406 + L1PA13 LINE L1 3047 5347 -2237 245 108 0 0 chr3 121035216 121035253 -106489325 + L1 LINE L1 3909 3945 -2201 7112 144 11 3 chr3 121035346 121035577 -106489001 + L1PA13 LINE L1 5399 5627 -1974 1615 170 203 11 chr3 121035577 121035936 -106488642 + MSTA LTR MaLR 1 428 0 7112 144 11 3 chr3 121035936 121036076 -106488502 + L1PA13 LINE L1 5627 5764 -1837 2193 122 0 3 chr3 121036076 121036371 -106488207 + AluSg SINE Alu 1 294 -16 7112 144 11 3 chr3 121036371 121037027 -106487551 + L1PA13 LINE L1 5764 6413 -1188 1779 179 46 27 chr3 121037027 121037395 -106487183 + THE1C LTR MaLR 1 375 0 9305 146 8 35 chr3 121037398 121039018 -106485560 + THE1C-int LTR MaLR 4 1580 0 1776 154 37 45 chr3 121039020 121039396 -106485182 + THE1C LTR MaLR 3 375 0 7112 144 11 3 chr3 121039396 121040575 -106484003 + L1PA13 LINE L1 6414 7601 0 342 299 56 91 chr3 121040697 121040928 -106483650 - L2 LINE L2 -9 3263 3041 1292 244 114 0 chr3 121041224 121041707 -106482871 + L1M4 LINE L1 2188 2725 -3421 1192 170 9 31 chr3 121041717 121041946 -106482632 - THE1-int LTR MaLR -699 881 658 726 168 22 15 chr3 121041961 121042098 -106482480 - THE1C LTR MaLR -237 138 1 1039 202 89 25 chr3 121042099 121042381 -106482197 + MSTA LTR MaLR 129 428 0 8330 142 81 9 chr3 121042381 121043856 -106480722 + THE1C-int LTR MaLR 1 1580 0 1996 146 18 44 chr3 121043856 121044239 -106480339 + THE1C LTR MaLR 1 373 -2 568 171 0 9 chr3 121044241 121044352 -106480226 - MSTA LTR MaLR -318 110 1 340 221 149 49 chr3 121045999 121046365 -106478213 - MLT1H LTR MaLR -2 553 152 2571 181 18 95 chr3 121047752 121047856 -106476722 - LTR9 LTR ERV1 0 612 502 2413 88 0 0 chr3 121047856 121048161 -106476417 + AluSq SINE Alu 1 305 -8 2571 181 18 95 chr3 121048161 121048719 -106475859 - LTR9 LTR ERV1 -110 502 1 207 0 0 0 chr3 121049612 121049635 -106474943 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1767 203 26 10 chr3 121051366 121051750 -106472828 - MLT1B LTR MaLR 0 390 1 698 278 106 44 chr3 121052177 121052260 -106472318 - L1MC4a LINE L1 -256 5906 5830 1271 144 18 31 chr3 121052260 121052482 -106472096 - MER20 DNA MER1_type 0 219 1 698 278 106 44 chr3 121052482 121053106 -106471472 - L1MC4a LINE L1 -332 5830 5160 3174 145 50 5 chr3 121053257 121053823 -106470755 - L1MC1 LINE L1 -8 6325 5735 308 250 118 40 chr3 121053840 121053992 -106470586 - L1MC1 LINE L1 -467 5654 5491 3290 190 10 11 chr3 121053993 121055163 -106469415 - L1MC/D LINE L1 -602 5731 4562 908 9 0 0 chr3 121055165 121055274 -106469304 + L1HS LINE L1 6047 6155 0 291 113 0 0 chr3 121055277 121055330 -106469248 + (A)n Simple_repeat Simple_repeat 1 53 0 2677 229 8 7 chr3 121055341 121056075 -106468503 - L1MC/D LINE L1 -1599 4547 3813 21 0 0 0 chr3 121056182 121056203 -106468375 + AT_rich Low_complexity Low_complexity 1 21 0 919 281 116 32 chr3 121057040 121057507 -106467071 + L2 LINE L2 2808 3313 0 29 47 0 0 chr3 121058564 121058607 -106465971 + AT_rich Low_complexity Low_complexity 1 43 0 2664 215 30 43 chr3 121060741 121061438 -106463140 + MER76 LTR ERV 1 688 0 1130 156 52 19 chr3 121061566 121061778 -106462800 - AluJo SINE Alu -9 303 85 219 234 0 0 chr3 121061943 121061990 -106462588 - MIR SINE MIR 0 262 216 442 277 22 21 chr3 121063385 121063552 -106461026 - MLT1H LTR MaLR -349 200 27 1428 238 114 37 chr3 121063572 121064401 -106460177 + L1M4 LINE L1 2859 3780 -2366 2905 209 65 17 chr3 121064401 121065090 -106459488 + MER72 LTR ERV1 1 722 0 1976 143 0 7 chr3 121065190 121065477 -106459101 - AluJb SINE Alu -27 285 1 202 156 31 16 chr3 121065693 121065757 -106458821 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 187 93 47 0 chr3 121066349 121066392 -106458186 + (TA)n Simple_repeat Simple_repeat 2 46 0 274 286 13 0 chr3 121066448 121066525 -106458053 + T-rich Low_complexity Low_complexity 3 80 0 241 188 31 16 chr3 121066736 121066800 -106457778 + (TCTA)n Simple_repeat Simple_repeat 4 68 0 368 296 9 9 chr3 121067129 121067237 -106457341 + L2 LINE L2 3157 3264 -8 180 200 0 0 chr3 121068015 121068055 -106456523 + GA-rich Low_complexity Low_complexity 3 42 0 996 212 5 10 chr3 121068443 121068646 -106455932 + MER20 DNA MER1_type 17 218 -1 2040 152 0 0 chr3 121068648 121068951 -106455627 - AluSx SINE Alu -9 303 1 265 306 65 16 chr3 121069698 121069822 -106454756 - MIR SINE MIR -58 150 21 528 305 73 17 chr3 121070222 121070455 -106454123 - MIR SINE MIR -14 248 3 209 337 153 43 chr3 121070644 121070970 -106453608 + L2 LINE L2 2599 2960 -354 2713 36 9 0 chr3 121071031 121071364 -106453214 + L1PA5 LINE L1 5818 6153 -1 1480 189 47 14 chr3 121071485 121071781 -106452797 + AluJo SINE Alu 1 306 -6 186 246 105 18 chr3 121071806 121071863 -106452715 + L2 LINE L2 3246 3307 -6 184 202 36 95 chr3 121072695 121072779 -106451799 - L3 LINE CR1 -1197 380 302 1710 140 57 106 chr3 121073083 121073489 -106451089 + MLT1B LTR MaLR 1 386 -4 198 0 0 0 chr3 121073876 121073898 -106450680 + (T)n Simple_repeat Simple_repeat 1 22 0 438 262 20 7 chr3 121074322 121074457 -106450121 - MIR SINE MIR -29 233 97 262 290 71 71 chr3 121075462 121075645 -106448933 + L2 LINE L2 103 285 -3029 277 294 63 91 chr3 121075737 121076023 -106448555 - MLT1I LTR MaLR -61 348 71 1103 281 77 59 chr3 121076087 121076682 -106447896 + L2 LINE L2 297 902 -2412 1993 146 73 19 chr3 121076684 121076906 -106447672 + MLT1B LTR MaLR 1 252 -138 2141 118 36 36 chr3 121076906 121077269 -106447309 + THE1B LTR MaLR 2 364 0 1993 146 73 19 chr3 121077269 121077416 -106447162 + MLT1B LTR MaLR 252 390 0 1040 298 124 45 chr3 121077419 121078057 -106446521 + L2 LINE L2 983 1670 -1644 225 154 0 0 chr3 121078540 121078579 -106445999 + (TG)n Simple_repeat Simple_repeat 2 40 0 828 212 13 102 chr3 121078865 121079158 -106445420 + MER4B-int LTR ERV1 4755 6075 -257 1791 155 92 0 chr3 121079159 121079494 -106445084 + LTR47A LTR ERVL 1 366 -86 484 255 52 13 chr3 121079870 121080023 -106444555 - MER69A DNA AcHobo -1 176 18 223 344 16 0 chr3 121080324 121080388 -106444190 - L3 LINE CR1 -48 1529 1465 286 330 56 34 chr3 121080431 121080610 -106443968 - L2 LINE L2 -8 3305 3123 183 328 66 0 chr3 121080692 121080753 -106443825 - L2 LINE L2 -366 2947 2883 237 242 179 0 chr3 121080772 121080867 -106443711 + MER20B DNA MER1_type 29 140 -643 248 351 61 12 chr3 121080922 121081087 -106443491 - L2 LINE L2 -419 2895 2723 369 96 0 16 chr3 121081167 121081231 -106443347 - FLAM SINE Alu -2 131 76 229 330 43 9 chr3 121081234 121081349 -106443229 - L3 LINE CR1 -180 1397 1279 2889 140 7 13 chr3 121081445 121081909 -106442669 - LOR1b LTR ERV1 0 461 1 204 282 35 24 chr3 121082382 121082467 -106442111 + MIR SINE MIR 106 191 -71 528 238 166 7 chr3 121083538 121083689 -106440889 - MER5A DNA MER1_type -1 188 14 23 0 0 0 chr3 121083846 121083869 -106440709 + AT_rich Low_complexity Low_complexity 1 23 0 41196 37 0 2 chr3 121083937 121089157 -106435421 + L1P LINE L1 7 5214 -932 2217 101 3 3 chr3 121089314 121089602 -106434976 - AluSx SINE Alu -24 288 1 431 113 0 103 chr3 121090093 121090190 -106434388 + L1MA9 LINE L1 6183 6269 -43 2076 109 3 0 chr3 121090211 121090528 -106434050 + AluSq SINE Alu 1 318 0 26 0 0 0 chr3 121090811 121090837 -106433741 + AT_rich Low_complexity Low_complexity 1 26 0 636 304 10 25 chr3 121090941 121091142 -106433436 + MIR SINE MIR 34 231 -31 221 229 95 57 chr3 121091838 121091943 -106432635 - MIR SINE MIR -47 215 107 449 315 49 0 chr3 121092296 121092458 -106432120 - MIR SINE MIR -40 222 53 2571 115 3 6 chr3 121092600 121092965 -106431613 - THE1B LTR MaLR 0 364 1 5498 102 17 51 chr3 121093866 121095140 -106429438 + L1PA15 LINE L1 4920 6162 -3 21 0 0 0 chr3 121095622 121095643 -106428935 + AT_rich Low_complexity Low_complexity 1 21 0 48 32 0 0 chr3 121095697 121095759 -106428819 + AT_rich Low_complexity Low_complexity 1 62 0 22 35 0 0 chr3 121095879 121095908 -106428670 + AT_rich Low_complexity Low_complexity 1 29 0 514 307 56 6 chr3 121097196 121097375 -106427203 - MIR SINE MIR -55 207 20 408 279 68 36 chr3 121097867 121098118 -106426460 + MIR SINE MIR 4 262 0 1129 219 0 9 chr3 121098207 121098426 -106426152 - MSTD LTR MaLR 0 396 180 1785 74 0 4 chr3 121098433 121098677 -106425901 - L1MA2 LINE L1 -4 6300 6058 362 21 21 0 chr3 121098677 121098724 -106425854 + (TTCC)n Simple_repeat Simple_repeat 2 49 0 595 119 79 0 chr3 121098739 121098840 -106425738 - AluSg/x SINE Alu -2 308 200 2020 109 0 4 chr3 121098841 121099116 -106425462 - AluSx SINE Alu -38 274 1 551 97 78 0 chr3 121099116 121099219 -106425359 - L1MA1 LINE L1 -238 6064 5954 746 249 32 0 chr3 121099220 121099405 -106425173 - MSTD LTR MaLR -205 191 1 212 297 16 0 chr3 121099760 121099824 -106424754 + L2 LINE L2 3245 3309 -4 329 339 119 19 chr3 121099824 121100237 -106424341 - L2 LINE L2 -1064 2250 1797 2297 78 7 3 chr3 121102530 121102839 -106421739 - AluSg SINE Alu 0 310 1 2259 116 33 28 chr3 121104761 121105123 -106419455 + THE1B LTR MaLR 1 364 0 1030 176 73 143 chr3 121105361 121105787 -106418791 - MSTD LTR MaLR 0 396 1 412 248 17 51 chr3 121107309 121107426 -106417152 + MIR SINE MIR 28 140 -122 247 326 0 0 chr3 121108149 121108238 -106416340 + MIR SINE MIR 161 249 -13 394 258 45 86 chr3 121108432 121108630 -106415948 - L1ME4a LINE L1 -279 5842 5653 227 301 0 27 chr3 121109756 121109829 -106414749 - L2 LINE L2 -2 3311 3241 512 128 0 0 chr3 121109976 121110062 -106414516 - L1MA5A LINE L1 0 6297 6212 1686 102 122 8 chr3 121111819 121112074 -106412504 + AluSg SINE Alu 3 286 -24 24 0 0 0 chr3 121112074 121112098 -106412480 + AT_rich Low_complexity Low_complexity 1 24 0 253 232 36 0 chr3 121113070 121113126 -106411452 - L2 LINE L2 0 3313 3256 428 195 0 0 chr3 121113169 121113256 -106411322 + MIR SINE MIR 171 257 -5 2113 103 30 0 chr3 121113336 121113517 -106411061 - AluY SINE Alu 0 311 116 222 37 0 0 chr3 121113517 121113544 -106411034 + (TG)n Simple_repeat Simple_repeat 2 28 0 2113 103 30 0 chr3 121113544 121113664 -106410914 - AluY SINE Alu -195 116 1 1969 147 3 3 chr3 121113834 121114133 -106410445 - AluSx SINE Alu -13 299 1 953 210 32 75 chr3 121114136 121114388 -106410190 - MIR SINE MIR -10 252 12 238 304 0 0 chr3 121117253 121117309 -106407269 + L2 LINE L2 3205 3260 -12 207 347 61 14 chr3 121119621 121119768 -106404810 - L2 LINE L2 -607 2707 2554 1857 158 20 0 chr3 121120631 121120923 -106403655 + AluSx SINE Alu 1 298 -14 421 306 83 58 chr3 121121041 121121645 -106402933 + HAL1 LINE L1 492 1110 -1397 1770 169 78 87 chr3 121121864 121122450 -106402128 - LTR38B LTR ERV1 -19 591 11 292 288 72 18 chr3 121122859 121122970 -106401608 - L2 LINE L2 -6 3266 3150 262 292 0 22 chr3 121123147 121123236 -106401342 + MER81 DNA DNA 3 89 -25 461 349 72 52 chr3 121123242 121123977 -106400601 - L2 LINE L2 -509 2805 1991 1731 201 25 107 chr3 121123991 121124542 -106400036 - MLT2B1 LTR ERVL 0 515 10 217 296 19 37 chr3 121124613 121124721 -106399857 - L2 LINE L2 -1405 1909 1804 592 279 121 46 chr3 121125323 121125696 -106398882 - MLT1I LTR MaLR -6 403 3 23 33 0 0 chr3 121125980 121126010 -106398568 + AT_rich Low_complexity Low_complexity 1 30 0 724 232 0 6 chr3 121126896 121127064 -106397514 - MLT1A1 LTR MaLR 0 365 199 2331 103 0 10 chr3 121128852 121129164 -106395414 + AluSq SINE Alu 1 309 -4 1097 138 11 0 chr3 121129626 121129800 -106394778 + LTR47A LTR ERVL 277 452 0 2377 65 0 0 chr3 121130132 121130426 -106394152 + AluY SINE Alu 1 294 -17 297 229 43 0 chr3 121130430 121130500 -106394078 + MER4B-int LTR ERV1 1601 1673 -4658 828 201 18 99 chr3 121130572 121130855 -106393723 + MER4B-int LTR ERV1 2089 2348 -3598 521 184 60 23 chr3 121130855 121130963 -106393615 + MER4B-int LTR ERV1 2529 2712 -3234 1800 185 13 0 chr3 121130963 121131271 -106393307 + AluJo SINE Alu 1 312 0 521 184 60 23 chr3 121131271 121131287 -106393291 + MER4B-int LTR ERV1 2712 2726 -3220 2371 175 55 53 chr3 121131292 121132077 -106392501 + MER4B-int LTR ERV1 2665 3486 -3272 602 168 0 0 chr3 121132077 121132184 -106392394 + FRAM SINE Alu 69 175 -1 6413 160 31 37 chr3 121132276 121134184 -106390394 + MER4B-int LTR ERV1 473 2391 -3940 2966 116 9 0 chr3 121134184 121134614 -106389964 + MER57B LTR ERV1 1 434 0 6413 160 31 37 chr3 121134614 121134975 -106389603 + MER4B-int LTR ERV1 2391 2753 -3578 2247 114 0 0 chr3 121134975 121135272 -106389306 + AluSx SINE Alu 1 297 -15 6413 160 31 37 chr3 121135272 121135587 -106388991 + MER4B-int LTR ERV1 2753 5569 -762 545 296 50 0 chr3 121135962 121136121 -106388457 + MIR SINE MIR 26 192 -70 207 360 144 0 chr3 121136217 121136370 -106388208 - L2 LINE L2 -4 3268 3094 381 262 32 8 chr3 121136843 121136969 -106387609 + LTR67 LTR ERVL 428 556 -1 507 291 122 15 chr3 121140706 121140902 -106383676 - MIR SINE MIR -43 219 3 357 221 13 0 chr3 121141253 121141330 -106383248 + MER81 DNA DNA 1 78 -36 294 254 0 0 chr3 121141407 121141462 -106383116 - MIR3 SINE MIR -43 165 111 289 278 44 11 chr3 121141622 121141712 -106382866 + L2 LINE L2 3173 3265 -7 13485 133 25 27 chr3 121143196 121143493 -106381085 + Tigger1 DNA MER2_type 1 297 -2121 2286 115 3 0 chr3 121143493 121143798 -106380780 - AluSx SINE Alu -6 306 1 13485 133 25 27 chr3 121143798 121145901 -106378677 + Tigger1 DNA MER2_type 297 2396 -22 253 236 0 0 chr3 121146107 121146162 -106378416 + L1MB8 LINE L1 5603 5657 -2151 3405 200 46 34 chr3 121147015 121148389 -106376189 + L1MB7 LINE L1 4769 6160 -24 25 0 0 0 chr3 121148467 121148492 -106376086 + AT_rich Low_complexity Low_complexity 1 25 0 267 282 107 48 chr3 121148530 121148633 -106375945 - MIR SINE MIR -139 123 15 24 0 0 0 chr3 121149990 121150014 -106374564 + AT_rich Low_complexity Low_complexity 1 24 0 3732 234 78 65 chr3 121150158 121152030 -106372548 + L1MDb LINE L1 153 2038 -4502 1171 219 43 10 chr3 121152314 121152615 -106371963 + L1MB8 LINE L1 5855 6165 -13 33 43 0 0 chr3 121152720 121152767 -106371811 + AT_rich Low_complexity Low_complexity 1 47 0 198 0 0 0 chr3 121152893 121152915 -106371663 + (T)n Simple_repeat Simple_repeat 1 22 0 24 0 0 0 chr3 121152947 121152971 -106371607 + AT_rich Low_complexity Low_complexity 1 24 0 500 215 69 21 chr3 121153197 121153341 -106371237 - MER58B DNA MER1_type 0 341 191 297 233 41 0 chr3 121154297 121154370 -106370208 - MIR SINE MIR -71 191 116 462 350 35 82 chr3 121154485 121154828 -106369750 + L2 LINE L2 2946 3272 0 218 266 31 16 chr3 121154844 121154908 -106369670 - MIR SINE MIR -164 98 34 1987 101 0 24 chr3 121154945 121155266 -106369312 + AluY SINE Alu 1 314 0 205 149 21 21 chr3 121155984 121156031 -106368547 + (TTA)n Simple_repeat Simple_repeat 1 47 0 8488 130 9 42 chr3 121157074 121158589 -106365989 - MSTA-int LTR MaLR -112 1468 3 1927 147 123 23 chr3 121158591 121158980 -106365598 - MSTA LTR MaLR 0 428 1 1422 217 66 76 chr3 121158990 121159115 -106365463 + L1M4 LINE L1 3359 3484 -2662 195 42 0 0 chr3 121159115 121159139 -106365439 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1422 217 66 76 chr3 121159139 121159576 -106365002 + L1M4 LINE L1 3484 3915 -2231 717 213 40 35 chr3 121159710 121160108 -106364470 + L1MDb LINE L1 2424 2824 -3716 2576 242 56 25 chr3 121160109 121161178 -106363400 + L1MDb LINE L1 3327 4428 -2112 492 236 25 54 chr3 121161192 121161395 -106363183 + L1MDb LINE L1 4778 4974 -1566 1965 213 0 3 chr3 121161396 121161762 -106362816 - MLT1A1 LTR MaLR 0 365 1 1903 219 28 23 chr3 121161762 121162233 -106362345 - MLT1A1-int LTR MaLR 0 1735 1263 488 172 35 0 chr3 121162574 121162672 -106361906 - MLT1A1-int LTR MaLR -948 752 602 3488 179 62 19 chr3 121162846 121163842 -106360736 - L1MD2 LINE L1 -275 6084 5053 451 256 8 1 chr3 121163849 121163980 -106360598 - L1MD2 LINE L1 -1172 4974 4838 237 172 0 17 chr3 121164046 121164104 -106360474 - L1MD2 LINE L1 -1443 4703 4647 311 282 10 0 chr3 121164229 121164332 -106360246 + L1MD2 LINE L1 5579 5682 -439 6688 112 16 8 chr3 121164350 121165428 -106359150 + L1P LINE L1 12 1097 -5049 64 71 0 0 chr3 121165625 121165752 -106358826 + GC_rich Low_complexity Low_complexity 1 127 0 1185 232 19 25 chr3 121165866 121166228 -106358350 + L1MD2 LINE L1 6000 6359 0 182 226 145 32 chr3 121166232 121166294 -106358284 + MIR SINE MIR 194 262 0 229 242 137 65 chr3 121166309 121166462 -106358116 + L3 LINE CR1 1077 1240 -337 612 281 95 5 chr3 121167111 121167321 -106357257 + MIR SINE MIR 31 259 -3 196 394 68 16 chr3 121167478 121167727 -106356851 - L2 LINE L2 -358 2956 2695 2342 165 24 47 chr3 121168072 121168581 -106355997 + L1MB3 LINE L1 5686 6182 -1 497 177 66 9 chr3 121169999 121170144 -106354434 - MLT1H1 LTR MaLR 0 595 430 365 42 0 56 chr3 121170220 121170292 -106354286 + (TCTCCC)n Simple_repeat Simple_repeat 5 72 0 617 169 169 32 chr3 121170294 121170448 -106354130 - MER96 DNA MER1_type 0 175 1 579 265 31 7 chr3 121170547 121170730 -106353848 - MLT1G1 LTR MaLR -363 186 1 1268 200 31 114 chr3 121170970 121171023 -106353555 + MLT1C LTR MaLR 1 57 -410 1344 171 44 114 chr3 121171023 121171410 -106353168 + MLT1A1 LTR MaLR 2 361 -4 1268 200 31 114 chr3 121171410 121171865 -106352713 + MLT1C LTR MaLR 57 467 0 366 360 137 22 chr3 121172591 121172905 -106351673 + L3 LINE CR1 1044 1393 -184 196 326 23 23 chr3 121172968 121173054 -106351524 + L2 LINE L2 3186 3271 -1 243 178 22 0 chr3 121173421 121173466 -106351112 - L2 LINE L2 -4 3309 3264 * 260 194 372 23 chr3 121173435 121173550 -106351028 - MIR SINE MIR -13 249 90 209 225 54 117 chr3 121173550 121173599 -106350979 - MER91B DNA MER1_type 0 190 139 2217 100 0 0 chr3 121173599 121173903 -106350675 + AluSc SINE Alu 1 304 0 209 225 54 117 chr3 121173903 121173963 -106350615 - MER91B DNA MER1_type -51 139 87 331 244 71 63 chr3 121173979 121174106 -106350472 - MER91B DNA MER1_type -62 128 1 249 339 61 0 chr3 121174687 121174802 -106349776 - L2 LINE L2 -1 3271 3150 2117 92 3 41 chr3 121174983 121175302 -106349276 + AluSp SINE Alu 1 308 0 1089 118 81 10 chr3 121177436 121177708 -106346870 + THE1B LTR MaLR 1 364 0 11717 87 15 1 chr3 121177708 121179266 -106345312 + THE1B-int LTR MaLR 1 1580 0 2181 118 51 28 chr3 121179266 121179622 -106344956 + THE1B LTR MaLR 1 364 0 186 43 0 0 chr3 121181208 121181231 -106343347 + (CA)n Simple_repeat Simple_repeat 2 24 0 1057 254 100 11 chr3 121181854 121182187 -106342391 + L2 LINE L2 2797 3156 -157 523 321 87 45 chr3 121182254 121182953 -106341625 + L1 LINE L1 2161 3018 -3128 771 178 45 13 chr3 121183069 121183226 -106341352 - FRAM SINE Alu -4 162 1 858 250 56 36 chr3 121183325 121183813 -106340765 + L1MC5 LINE L1 6419 6924 -884 254 226 98 55 chr3 121183875 121184039 -106340539 + L1 LINE L1 4281 4451 -1695 684 233 23 93 chr3 121184532 121184876 -106339702 + L1MC4 LINE L1 7484 7803 -239 667 114 32 32 chr3 121184971 121185094 -106339484 + MER20 DNA MER1_type 43 165 -54 285 146 18 0 chr3 121185125 121185180 -106339398 + MER20 DNA MER1_type 164 219 0 373 206 238 0 chr3 121185922 121186048 -106338530 - MER58C DNA MER1_type -13 202 47 249 276 76 7 chr3 121186452 121186597 -106337981 - L1ME4a LINE L1 -1 6120 5966 270 248 57 48 chr3 121186661 121186766 -106337812 - L1ME3A LINE L1 -14 6156 6051 315 292 41 26 chr3 121186797 121186992 -106337586 - L1ME3A LINE L1 -219 5951 5754 1309 143 29 79 chr3 121186996 121187311 -106337267 - L1MB8 LINE L1 0 6178 5880 566 262 174 34 chr3 121187321 121188112 -106336466 - L1MB8 LINE L1 -418 5748 4848 418 242 67 95 chr3 121188099 121188372 -106336206 + L1MEc LINE L1 706 870 -5200 * 1927 148 3 30 chr3 121188372 121188670 -106335908 + AluSx SINE Alu 1 290 -22 418 242 67 95 chr3 121188670 121188882 -106335696 + L1MEc LINE L1 870 1086 -4984 458 284 47 30 chr3 121188963 121189195 -106335383 - MER20B DNA MER1_type -543 240 5 381 278 56 75 chr3 121189195 121189447 -106335131 + L2 LINE L2 2837 3083 -230 1763 169 33 56 chr3 121189453 121189849 -106334729 - MLT1B LTR MaLR 0 390 4 1104 145 0 6 chr3 121189893 121190052 -106334526 - AluSg/x SINE Alu -19 291 134 297 293 15 38 chr3 121190053 121190186 -106334392 + L2 LINE L2 3127 3256 -57 898 137 0 0 chr3 121190416 121190547 -106334031 - AluJb SINE Alu -181 131 1 586 227 80 61 chr3 121192202 121192515 -106332063 + L1MEc LINE L1 2585 2903 -3177 229 306 163 0 chr3 121192609 121192818 -106331760 + L1MEc LINE L1 167 409 -5987 279 266 32 75 chr3 121192846 121193098 -106331480 + L1MEc LINE L1 499 739 -5657 1193 210 24 60 chr3 121193258 121193626 -106330952 + MLT2B1 LTR ERVL 1 358 -56 302 146 0 0 chr3 121193691 121193739 -106330839 + MLT2B1 LTR ERVL 468 515 0 846 311 10 39 chr3 121193740 121194049 -106330529 - LTR16B LTR ERVL -153 311 12 308 294 12 0 chr3 121194107 121194192 -106330386 - HERV16 LTR ERVL -3016 1980 1895 779 337 18 18 chr3 121194428 121194760 -106329818 - HERV16 LTR ERVL -3418 1578 1247 1352 262 57 8 chr3 121195185 121195586 -106328992 + LTR16A LTR ERVL 16 436 -14 1866 141 10 7 chr3 121195649 121195940 -106328638 - AluSx SINE Alu -20 292 1 2249 116 0 3 chr3 121197463 121197764 -106326814 + AluSg SINE Alu 2 301 -9 23 0 0 0 chr3 121198080 121198103 -106326475 + AT_rich Low_complexity Low_complexity 1 23 0 1282 181 10 0 chr3 121198674 121198879 -106325699 + AluJb SINE Alu 85 291 -21 769 273 25 35 chr3 121199194 121199480 -106325098 + L2 LINE L2 1844 2126 -1188 337 226 255 10 chr3 121199529 121199631 -106324947 + L2 LINE L2 3186 3312 -1 508 238 37 37 chr3 121199723 121199887 -106324691 - MIR SINE MIR -96 166 3 211 202 11 112 chr3 121200052 121200141 -106324437 + MIR SINE MIR 123 202 -60 222 271 73 31 chr3 121201081 121201177 -106323401 + MIR SINE MIR 162 261 -1 815 203 68 13 chr3 121201322 121201560 -106323018 - MSTD LTR MaLR -3 393 97 24 32 0 0 chr3 121201640 121201671 -106322907 + AT_rich Low_complexity Low_complexity 1 31 0 189 138 0 0 chr3 121203243 121203272 -106321306 + L2 LINE L2 2938 2966 -347 553 240 25 34 chr3 121203475 121203679 -106320899 + MER110A LTR ERV1 25 226 -242 25 31 0 0 chr3 121203697 121203729 -106320849 + AT_rich Low_complexity Low_complexity 1 32 0 443 366 16 5 chr3 121204150 121204344 -106320234 + L2 LINE L2 208 403 -2911 654 198 95 121 chr3 121204357 121204543 -106320035 + L1MC5 LINE L1 6754 6926 -1035 1938 184 0 0 chr3 121204543 121204847 -106319731 + AluJb SINE Alu 1 304 -8 654 198 95 121 chr3 121204847 121205049 -106319529 + L1MC5 LINE L1 6926 7132 -829 349 308 64 23 chr3 121205089 121205261 -106319317 + L1ME LINE L1 172 350 -5855 707 269 34 33 chr3 121205448 121205850 -106318728 + L1ME LINE L1 1929 2292 -3923 1387 151 0 14 chr3 121205850 121206062 -106318516 + AluJb SINE Alu 84 292 -20 1317 226 134 52 chr3 121206070 121206236 -106318342 + L1ME LINE L1 2291 2442 -3773 2295 121 38 11 chr3 121206236 121206601 -106317977 - THE1C LTR MaLR 0 375 1 1317 226 134 52 chr3 121206601 121207085 -106317493 + L1ME LINE L1 2442 2994 -3221 897 237 27 18 chr3 121207256 121207480 -106317098 - LTR40b LTR ERVL -4 458 233 350 330 9 0 chr3 121207480 121207592 -106316986 + MER81 DNA DNA 1 113 -1 * 1171 254 20 17 chr3 121207592 121207887 -106316691 - LTR40a LTR ERVL -223 296 1 210 71 0 0 chr3 121208283 121208311 -106316267 + (A)n Simple_repeat Simple_repeat 1 28 0 1842 200 103 43 chr3 121208690 121209291 -106315287 - MLT1E2 LTR MaLR 0 626 3 305 344 8 16 chr3 121211106 121211234 -106313344 + MIR SINE MIR 12 138 -124 365 280 60 0 chr3 121211316 121211466 -106313112 + MLT1J1 LTR MaLR 1 159 -287 547 256 56 26 chr3 121211491 121211690 -106312888 + MLT1J2 LTR MaLR 239 441 -9 288 0 0 0 chr3 121213084 121213116 -106311462 + (TTG)n Simple_repeat Simple_repeat 2 33 0 447 251 125 48 chr3 121213116 121213467 -106311111 + MLT1J2 LTR MaLR 45 422 -28 599 298 32 41 chr3 121213940 121214255 -106310323 + LTR16B LTR ERVL 133 444 -20 28 29 0 0 chr3 121214335 121214370 -106310208 + AT_rich Low_complexity Low_complexity 1 35 0 1868 127 0 31 chr3 121214424 121214743 -106309835 - AluJo SINE Alu 0 310 1 967 213 76 94 chr3 121214947 121215468 -106309110 - MLT1E LTR MaLR 0 593 10 26 0 0 0 chr3 121215469 121215495 -106309083 + AT_rich Low_complexity Low_complexity 1 26 0 28 29 0 0 chr3 121215612 121215647 -106308931 + AT_rich Low_complexity Low_complexity 1 35 0 467 0 35 0 chr3 121215840 121215898 -106308680 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 427 302 67 17 chr3 121217198 121217256 -106307322 - MLT1J2 LTR MaLR 0 450 396 269 51 26 0 chr3 121217256 121217295 -106307283 + (CA)n Simple_repeat Simple_repeat 1 40 0 427 302 67 17 chr3 121217295 121217415 -106307163 - MLT1J2 LTR MaLR -54 396 263 323 229 42 21 chr3 121217457 121217553 -106307025 - MLT1J2 LTR MaLR -275 175 78 1713 166 3 35 chr3 121217605 121217918 -106306660 - AluJb SINE Alu -1 311 9 381 216 138 9 chr3 121217934 121218050 -106306528 + Charlie4 DNA MER1_type 4 134 -1827 724 357 40 8 chr3 121218186 121218564 -106306014 + LTR16C LTR ERVL 99 488 -3 716 376 31 15 chr3 121219222 121219762 -106304816 + HERV16 LTR ERVL 1003 1551 -3445 231 61 0 0 chr3 121219828 121219861 -106304717 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 450 229 18 0 chr3 121220138 121220247 -106304331 - MLT1G1 LTR MaLR -3 592 482 421 280 51 57 chr3 121220270 121220531 -106304047 - MLT1J2 LTR MaLR -273 257 39 2029 147 0 16 chr3 121220531 121220837 -106303741 + AluJb SINE Alu 1 301 -11 421 280 51 57 chr3 121220837 121220876 -106303702 - MLT1J2 LTR MaLR -491 39 1 239 169 136 0 chr3 121220984 121221043 -106303535 + L1ME1 LINE L1 1219 1285 -5124 1417 249 58 0 chr3 121221051 121222666 -106301912 + L1ME1 LINE L1 1379 3188 -3218 2213 114 0 7 chr3 121222675 121222974 -106301604 + AluSx SINE Alu 1 297 -15 1870 252 106 39 chr3 121223002 121224051 -106300527 + L1ME1 LINE L1 3467 4585 -1821 1440 189 81 138 chr3 121224060 121224852 -106299726 + L1ME1 LINE L1 4682 5428 -978 1982 155 0 13 chr3 121224877 121225180 -106299398 + AluJb SINE Alu 2 300 -12 2547 210 82 50 chr3 121225243 121226182 -106298396 + L1ME1 LINE L1 5465 6421 -5 35 41 0 0 chr3 121226182 121226231 -106298347 + AT_rich Low_complexity Low_complexity 1 49 0 2578 58 0 0 chr3 121226292 121226603 -106297975 - AluY SINE Alu 0 311 1 640 278 73 29 chr3 121226604 121226809 -106297769 - MIR SINE MIR -34 228 15 568 242 210 5 chr3 121228114 121228300 -106296278 - MER58A DNA MER1_type 0 224 1 670 289 21 16 chr3 121229917 121230107 -106294471 - MIR SINE MIR -53 209 19 1728 180 67 6 chr3 121230649 121230993 -106293585 + MLT1A1 LTR MaLR 1 365 0 2210 109 0 3 chr3 121231276 121231570 -106293008 - AluSx SINE Alu -19 293 1 180 0 0 0 chr3 121231709 121231729 -106292849 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 314 310 86 43 chr3 121232182 121232369 -106292209 - L3 LINE CR1 -136 1441 1247 196 232 89 0 chr3 121232762 121232818 -106291760 + MIR SINE MIR 159 219 -43 307 335 84 10 chr3 121232879 121233082 -106291496 + L1M4 LINE L1 3247 3464 -2682 369 275 142 28 chr3 121233384 121233737 -106290841 + L1M4 LINE L1 3715 4107 -2039 1900 192 5 24 chr3 121234950 121235186 -106289392 + MLT1A1 LTR MaLR 4 232 -133 2323 161 95 2 chr3 121235186 121235607 -106288971 - LTR46 LTR ERV1 0 460 1 1900 192 5 24 chr3 121235607 121235739 -106288839 + MLT1A1 LTR MaLR 232 365 0 2253 144 47 28 chr3 121235742 121236166 -106288412 - MSTB1 LTR MaLR 0 432 1 202 239 0 0 chr3 121236235 121236281 -106288297 + T-rich Low_complexity Low_complexity 1 46 0 302 157 0 0 chr3 121236553 121236604 -106287974 - L1M4 LINE L1 -1254 5286 5236 273 182 0 0 chr3 121236862 121236917 -106287661 + (TA)n Simple_repeat Simple_repeat 2 56 0 4686 226 82 17 chr3 121237466 121239672 -106284906 - L1ME1 LINE L1 -26 6140 3784 810 251 50 6 chr3 121239705 121240024 -106284554 - L1ME1 LINE L1 -2956 3190 2858 4165 236 66 37 chr3 121240046 121240507 -106284071 - L1MDa LINE L1 -2396 4144 3698 2435 88 0 0 chr3 121240507 121240803 -106283775 - AluSx SINE Alu -3 309 14 4165 236 66 37 chr3 121240803 121242045 -106282533 - L1MDa LINE L1 -2842 3698 2367 294 29 0 0 chr3 121242045 121242080 -106282498 + (CA)n Simple_repeat Simple_repeat 1 35 0 4165 236 66 37 chr3 121242080 121242301 -106282277 - L1MDa LINE L1 -4173 2367 2154 1692 175 60 6 chr3 121242395 121242710 -106281868 + MLT1A1 LTR MaLR 32 363 -2 1106 250 93 34 chr3 121242750 121243190 -106281388 + MLT1C LTR MaLR 2 467 0 1282 251 55 22 chr3 121243204 121243499 -106281079 - L1M2c LINE L1 -4471 2069 1768 1379 172 96 34 chr3 121243499 121243790 -106280788 - AluJo SINE Alu -1 311 3 1282 251 55 22 chr3 121243790 121243999 -106280579 - L1M2c LINE L1 -4772 1768 1567 1708 287 45 59 chr3 121244758 121245651 -106278927 + MER110-int LTR ERV1 2727 3606 -1041 502 271 0 9 chr3 121245667 121245774 -106278804 - MER110-int LTR ERV1 -826 3821 3716 1275 176 10 0 chr3 121246392 121246597 -106277981 + AluJb SINE Alu 85 291 -21 767 273 25 35 chr3 121246912 121247198 -106277380 + L2 LINE L2 1844 2126 -1188 335 226 255 10 chr3 121247247 121247349 -106277229 + L2 LINE L2 3186 3312 -1 507 238 37 37 chr3 121247441 121247605 -106276973 - MIR SINE MIR -96 166 3 215 202 11 112 chr3 121247771 121247860 -106276718 + MIR SINE MIR 123 202 -60 224 271 73 31 chr3 121248800 121248896 -106275682 + MIR SINE MIR 162 261 -1 847 209 97 11 chr3 121249041 121249279 -106275299 - MSTD LTR MaLR -3 393 97 24 32 0 0 chr3 121249359 121249390 -106275188 + AT_rich Low_complexity Low_complexity 1 31 0 200 103 0 0 chr3 121250963 121250992 -106273586 + L2 LINE L2 2938 2966 -347 608 240 25 34 chr3 121251195 121251399 -106273179 + MER110A LTR ERV1 25 226 -242 25 31 0 0 chr3 121251417 121251449 -106273129 + AT_rich Low_complexity Low_complexity 1 32 0 442 366 16 5 chr3 121251870 121252064 -106272514 + L2 LINE L2 208 403 -2911 730 203 95 121 chr3 121252077 121252263 -106272315 + L1MC5 LINE L1 6754 6926 -1035 1882 188 0 0 chr3 121252263 121252567 -106272011 + AluJb SINE Alu 1 304 -8 730 203 95 121 chr3 121252567 121252769 -106271809 + L1MC5 LINE L1 6926 7132 -829 400 319 52 46 chr3 121252772 121253082 -106271496 + L1ME LINE L1 55 350 -5855 789 271 32 42 chr3 121253168 121253571 -106271007 + L1ME LINE L1 1929 2292 -3923 1368 151 0 14 chr3 121253571 121253783 -106270795 + AluJb SINE Alu 84 292 -20 1471 223 134 52 chr3 121253791 121253957 -106270621 + L1ME LINE L1 2291 2442 -3773 2288 121 38 11 chr3 121253957 121254322 -106270256 - THE1C LTR MaLR 0 375 1 1471 223 134 52 chr3 121254322 121254806 -106269772 + L1ME LINE L1 2442 2994 -3221 976 237 27 18 chr3 121254977 121255201 -106269377 - LTR40b LTR ERVL -4 458 233 390 330 9 0 chr3 121255201 121255313 -106269265 + MER81 DNA DNA 1 113 -1 * 1252 248 27 23 chr3 121255313 121255608 -106268970 - LTR40a LTR ERVL -223 296 1 219 69 0 0 chr3 121256004 121256033 -106268545 + (A)n Simple_repeat Simple_repeat 1 29 0 2016 196 103 39 chr3 121256412 121256926 -106267652 - MLT1E2 LTR MaLR 0 626 80 335 244 87 39 chr3 121256834 121256961 -106267617 - MLT2C1 LTR ERVL -216 181 49 * 410 159 186 53 chr3 121256993 121257106 -106267472 - MLT1E2 LTR MaLR -494 130 3 303 344 8 16 chr3 121258922 121259050 -106265528 + MIR SINE MIR 12 138 -124 411 280 60 0 chr3 121259132 121259282 -106265296 + MLT1J1 LTR MaLR 1 159 -287 603 256 56 26 chr3 121259307 121259506 -106265072 + MLT1J2 LTR MaLR 239 441 -9 21 0 0 0 chr3 121260411 121260432 -106264146 + AT_rich Low_complexity Low_complexity 1 21 0 288 0 0 0 chr3 121260902 121260934 -106263644 + (TTG)n Simple_repeat Simple_repeat 2 33 0 555 251 125 48 chr3 121260934 121261285 -106263293 + MLT1J2 LTR MaLR 45 422 -28 666 320 65 42 chr3 121261639 121262073 -106262505 + LTR16B LTR ERVL 1 444 -20 28 29 0 0 chr3 121262153 121262188 -106262390 + AT_rich Low_complexity Low_complexity 1 35 0 1853 123 0 31 chr3 121262242 121262561 -106262017 - AluJo SINE Alu 0 310 1 1052 213 101 95 chr3 121262765 121263286 -106261292 - MLT1E LTR MaLR 0 593 10 26 0 0 0 chr3 121263287 121263313 -106261265 + AT_rich Low_complexity Low_complexity 1 26 0 28 29 0 0 chr3 121263430 121263465 -106261113 + AT_rich Low_complexity Low_complexity 1 35 0 467 0 35 0 chr3 121263658 121263716 -106260862 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 483 302 67 17 chr3 121265017 121265075 -106259503 - MLT1J2 LTR MaLR 0 450 396 269 51 26 0 chr3 121265075 121265114 -106259464 + (CA)n Simple_repeat Simple_repeat 1 40 0 483 302 67 17 chr3 121265114 121265234 -106259344 - MLT1J2 LTR MaLR -54 396 263 355 233 77 21 chr3 121265263 121265394 -106259184 - MLT1J2 LTR MaLR -255 191 41 921 176 92 51 chr3 121265445 121265718 -106258860 - AluJo SINE Alu -20 292 9 417 216 138 9 chr3 121265734 121265850 -106258728 + Charlie4 DNA MER1_type 4 134 -1827 843 357 40 8 chr3 121265986 121266364 -106258214 + LTR16C LTR ERVL 99 488 -3 864 368 37 18 chr3 121267022 121267569 -106257009 + HERV16 LTR ERVL 1003 1559 -3437 231 61 0 0 chr3 121267628 121267661 -106256917 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 396 266 18 0 chr3 121267938 121268047 -106256531 - MLT1G1 LTR MaLR -3 592 482 491 284 46 65 chr3 121268070 121268331 -106256247 - MLT1G3 LTR MaLR -273 257 39 2000 144 0 16 chr3 121268331 121268637 -106255941 + AluJb SINE Alu 1 301 -11 491 284 46 65 chr3 121268637 121268676 -106255902 - MLT1G3 LTR MaLR -491 39 1 256 169 136 0 chr3 121268784 121268843 -106255735 + L1MDb LINE L1 1219 1285 -5124 1360 227 69 34 chr3 121268851 121269858 -106254720 + L1MDb LINE L1 1379 2454 -3952 1591 243 142 0 chr3 121269882 121270466 -106254112 + L1MDb LINE L1 2522 3188 -3218 2198 114 0 7 chr3 121270475 121270774 -106253804 + AluSx SINE Alu 1 297 -15 1396 270 33 26 chr3 121270802 121271376 -106253202 + L1MDb LINE L1 3467 4044 -2362 248 139 0 0 chr3 121271516 121271552 -106253026 - Alu SINE Alu -266 36 1 180 0 0 0 chr3 121271690 121271710 -106252868 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 333 316 112 33 chr3 121272162 121272377 -106252201 - L3 LINE CR1 -136 1441 1210 6059 174 37 33 chr3 121273343 121274611 -106249967 + L1P LINE L1 39 1311 -4835 770 105 9 0 chr3 121274726 121274840 -106249738 + AluSg/x SINE Alu 179 293 -19 1648 195 67 6 chr3 121275123 121275467 -106249111 - MLT1A1 LTR MaLR 0 365 1 537 294 65 43 chr3 121276080 121276356 -106248222 + MER110-int LTR ERV1 3775 4056 -591 1212 262 55 66 chr3 121276447 121276708 -106247870 + MER110-int LTR ERV1 4196 4451 -196 2314 104 0 3 chr3 121276708 121277015 -106247563 + AluSg SINE Alu 1 306 -4 1212 262 55 66 chr3 121277015 121277207 -106247371 + MER110-int LTR ERV1 4451 4644 -3 1828 215 22 55 chr3 121277290 121277782 -106246796 + MER110 LTR ERV1 1 476 -15 241 239 0 91 chr3 121279013 121279101 -106245477 + L2 LINE L2 3150 3229 -84 26 0 0 0 chr3 121279489 121279515 -106245063 + AT_rich Low_complexity Low_complexity 1 26 0 986 204 82 122 chr3 121279557 121280032 -106244546 - LTR37B LTR ERV1 0 468 13 2237 100 0 3 chr3 121280033 121280332 -106244246 - AluSx SINE Alu -14 298 1 1719 182 119 27 chr3 121280499 121280912 -106243666 - MLT1C LTR MaLR -6 461 11 639 200 13 45 chr3 121281020 121281085 -106243493 - MLT1C LTR MaLR -2 465 399 1631 193 7 0 chr3 121281085 121281439 -106243139 + AluJb SINE Alu 1 356 0 639 200 13 45 chr3 121281439 121281527 -106243051 - MLT1C LTR MaLR -68 399 316 2331 67 7 13 chr3 121281534 121281832 -106242746 - AluSc SINE Alu -13 296 1 3766 114 101 0 chr3 121281851 121282436 -106242142 - MER39B LTR ERV1 -9 644 1 302 210 0 0 chr3 121282439 121282501 -106242077 - MLT1C LTR MaLR -190 277 216 254 275 43 116 chr3 121282536 121282619 -106241959 - L1MEc LINE L1 -4320 2818 2731 2058 121 7 0 chr3 121282619 121282942 -106241636 - AluSx SINE Alu 0 325 1 254 275 43 116 chr3 121282942 121283227 -106241351 - L1MEc LINE L1 -4407 2731 2475 6419 187 75 37 chr3 121283448 121284841 -106239737 - L1MEc LINE L1 -5401 1458 14 18181 194 17 17 chr3 121285409 121288439 -106236139 - L1PA14 LINE L1 -5 7594 4565 2128 104 0 0 chr3 121288439 121288719 -106235859 - AluSc SINE Alu 0 309 30 18181 194 17 17 chr3 121288719 121292839 -106231739 - L1PA14 LINE L1 -3034 4565 608 387 287 91 14 chr3 121293006 121293149 -106231429 - L2 LINE L2 -2 3311 3158 752 336 45 24 chr3 121293169 121293588 -106230990 + LTR16A LTR ERVL 17 444 -6 2071 324 26 7 chr3 121293952 121294782 -106229796 + HERV16 LTR ERVL 732 1577 -3419 539 299 0 7 chr3 121294829 121294976 -106229602 + HERV16 LTR ERVL 1674 1819 -3177 855 346 28 46 chr3 121295073 121295902 -106228676 + HERV16 LTR ERVL 2937 3750 -2014 1593 216 52 14 chr3 121295920 121296364 -106228214 - MLT1C LTR MaLR -1 466 6 416 271 87 24 chr3 121296369 121296576 -106228002 + HERV16 LTR ERVL 3764 3983 -1781 213 303 0 30 chr3 121296763 121296829 -106227749 + L2 LINE L2 3248 3311 -2 * 265 250 43 69 chr3 121296825 121296941 -106227637 - L2 LINE L2 -853 2461 2349 779 259 85 40 chr3 121296948 121297276 -106227302 + LTR16C LTR ERVL 90 432 -59 423 284 52 0 chr3 121297427 121297561 -106227017 + L2 LINE L2 1209 1349 -1965 2852 286 110 64 chr3 121297642 121298904 -106225674 + L2 LINE L2 1345 2546 -767 956 210 11 0 chr3 121298904 121299080 -106225498 + MER45A DNA AcHobo 1 178 0 2852 286 110 64 chr3 121299080 121299492 -106225086 + L2 LINE L2 2546 2937 -376 225 0 0 0 chr3 121299492 121299517 -106225061 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 1748 154 11 0 chr3 121299517 121299783 -106224795 - AluJo SINE Alu -32 280 12 2852 286 110 64 chr3 121299783 121299977 -106224601 + L2 LINE L2 2936 3280 -33 219 103 0 0 chr3 121299982 121300021 -106224557 + (ACTG)n Simple_repeat Simple_repeat 4 42 0 387 257 110 48 chr3 121300550 121300822 -106223756 + LTR16A1 LTR ERVL 8 296 -161 264 364 77 15 chr3 121301152 121301347 -106223231 + L2 LINE L2 2957 3163 -109 2147 108 0 14 chr3 121305446 121305763 -106218815 + AluSx SINE Alu 1 313 0 1642 153 0 61 chr3 121306282 121306577 -106218001 + AluJo SINE Alu 22 298 -14 186 286 48 0 chr3 121306585 121306627 -106217951 - L2 LINE L2 -16 3297 3254 2288 87 0 3 chr3 121306654 121306965 -106217613 + AluY SINE Alu 1 310 -1 1927 156 30 0 chr3 121307252 121307547 -106217031 - AluJb SINE Alu -8 304 1 2352 87 3 0 chr3 121307560 121307859 -106216719 - AluSg SINE Alu -10 300 1 1811 172 0 30 chr3 121308066 121308368 -106216210 - AluJb SINE Alu -19 293 1 878 131 0 0 chr3 121308544 121308666 -106215912 + AluSx SINE Alu 12 133 -180 42295 39 1 1 chr3 121308671 121314883 -106209695 + L1PA3 LINE L1 1 6208 0 982 136 93 6 chr3 121314887 121315049 -106209529 + AluSx SINE Alu 119 294 -16 395 95 162 0 chr3 121315077 121315151 -106209427 + L1P4 LINE L1 5426 5511 -657 4823 105 18 14 chr3 121315433 121316164 -106208414 - L1PA13 LINE L1 -4 6159 5426 25 0 0 0 chr3 121316171 121316196 -106208382 + AT_rich Low_complexity Low_complexity 1 25 0 2131 122 8 12 chr3 121316957 121317400 -106207178 + MER51B LTR ERV1 1 377 0 1644 231 15 17 chr3 121317400 121317863 -106206715 + L1ME1 LINE L1 5613 6074 -92 253 345 26 0 chr3 121318001 121318117 -106206461 + MERVL LTR ERVL 1860 1978 -3507 548 212 127 42 chr3 121318150 121318315 -106206263 - MER5A DNA MER1_type 0 189 11 2449 71 3 0 chr3 121318405 121318702 -106205876 + AluSp SINE Alu 1 298 -15 1430 226 52 30 chr3 121320262 121320805 -106203773 + L1M4 LINE L1 2543 3097 -3049 493 83 0 0 chr3 121322366 121322450 -106202128 + L1PB1 LINE L1 6065 6148 -3 530 340 37 5 chr3 121322817 121323008 -106201570 + MIR3 SINE MIR 4 200 -8 826 269 83 32 chr3 121323692 121324619 -106199959 - L1M4 LINE L1 -1316 4830 3952 1351 271 70 46 chr3 121324619 121325161 -106199417 - MLT1H1 LTR MaLR 0 555 1 826 269 83 32 chr3 121325161 121325515 -106199063 - L1M4 LINE L1 -2194 3952 3618 1745 172 3 27 chr3 121325515 121325812 -106198766 - AluJo SINE Alu -22 290 1 826 269 83 32 chr3 121325812 121325953 -106198625 - L1M4 LINE L1 -2528 3618 3125 2495 275 110 40 chr3 121326026 121328376 -106196202 - L1M4 LINE L1 -852 5294 2782 2476 144 62 21 chr3 121328399 121328526 -106196052 - MER75 DNA T2_type 0 514 394 2149 123 3 7 chr3 121328526 121328836 -106195742 + AluSx SINE Alu 1 309 -3 2476 144 62 21 chr3 121328836 121329188 -106195390 - MER75 DNA T2_type -120 394 15 414 316 40 32 chr3 121329351 121329601 -106194977 - L1MEc LINE L1 -4287 2109 1858 382 265 0 20 chr3 121329686 121329833 -106194745 - L1MEc LINE L1 -4514 1701 1558 279 279 28 49 chr3 121330070 121330203 -106194375 - L1MEc LINE L1 -4923 1473 1346 1409 111 60 0 chr3 121330203 121330419 -106194159 - MER30 DNA MER1_type 0 230 2 279 279 28 49 chr3 121330419 121330532 -106194046 - L1MEc LINE L1 -5050 1346 1232 2625 62 0 14 chr3 121330614 121330967 -106193611 + LTR46 LTR ERV1 1 348 -112 22 0 0 0 chr3 121331159 121331181 -106193397 + AT_rich Low_complexity Low_complexity 1 22 0 776 136 0 79 chr3 121332062 121332202 -106192376 + FRAM SINE Alu 36 164 -12 277 329 110 20 chr3 121332349 121332495 -106192083 + MIR SINE MIR 14 172 -90 1895 118 0 25 chr3 121332822 121333126 -106191452 + AluSx SINE Alu 14 310 0 23 0 0 0 chr3 121333184 121333207 -106191371 + AT_rich Low_complexity Low_complexity 1 23 0 33 25 0 0 chr3 121333462 121333502 -106191076 + AT_rich Low_complexity Low_complexity 1 40 0 530 305 117 25 chr3 121333809 121334048 -106190530 - MIR SINE MIR 0 262 2 240 305 39 52 chr3 121334432 121334586 -106189992 - L2 LINE L2 -7 3306 3155 292 245 50 29 chr3 121334696 121334835 -106189743 + MER103 DNA DNA 13 154 -12 958 149 48 14 chr3 121334842 121335050 -106189528 + MLT1A1 LTR MaLR 1 215 -150 2581 102 8 0 chr3 121335738 121336099 -106188479 + THE1B LTR MaLR 1 364 0 1907 163 3 13 chr3 121336126 121336427 -106188151 + AluJo SINE Alu 1 298 -14 810 203 25 0 chr3 121336512 121336670 -106187908 + LTR40a LTR ERVL 1 162 -357 779 211 76 0 chr3 121336668 121336839 -106187739 + LTR40a LTR ERVL 292 475 -44 * 352 308 118 23 chr3 121336933 121337196 -106187382 + LTR16A LTR ERVL 155 442 -8 451 203 71 82 chr3 121337562 121337744 -106186834 - MER104 DNA MER2_type 0 180 1 29 28 0 0 chr3 121337866 121337902 -106186676 + AT_rich Low_complexity Low_complexity 1 36 0 24 32 0 0 chr3 121338023 121338054 -106186524 + AT_rich Low_complexity Low_complexity 1 31 0 1468 183 13 47 chr3 121338056 121338373 -106186205 + AluJo SINE Alu 1 306 -6 349 307 91 11 chr3 121338414 121338590 -106185988 - MIR3 SINE MIR -17 191 2 471 73 0 0 chr3 121338733 121338801 -106185777 + (GA)n Simple_repeat Simple_repeat 1 68 0 2205 129 0 19 chr3 121339118 121339436 -106185142 + AluSx SINE Alu 1 312 0 2308 138 15 40 chr3 121339504 121340131 -106184447 + L1PB4 LINE L1 5100 5712 -444 446 99 0 0 chr3 121340136 121340207 -106184371 - MADE1 DNA Mariner -7 73 3 2493 121 78 10 chr3 121340211 121340623 -106183955 + L1PB4 LINE L1 5709 6148 -8 200 327 0 0 chr3 121341070 121341122 -106183456 + L2 LINE L2 3256 3307 -6 * 296 242 83 42 chr3 121341106 121341226 -106183352 - MIR SINE MIR -10 252 128 1972 134 134 31 chr3 121343444 121343832 -106180746 - MSTA LTR MaLR 0 428 1 1277 161 134 9 chr3 121344295 121344518 -106180060 - AluSg SINE Alu -21 289 39 25 31 0 0 chr3 121344733 121344765 -106179813 + AT_rich Low_complexity Low_complexity 1 32 0 27 29 0 0 chr3 121345063 121345097 -106179481 + AT_rich Low_complexity Low_complexity 1 34 0 271 253 126 0 chr3 121346713 121346800 -106177778 - L2 LINE L2 -1 3312 3215 768 136 8 0 chr3 121346800 121346925 -106177653 + FLAM_A SINE Alu 10 135 -7 189 361 57 65 chr3 121346929 121347159 -106177419 - L2 LINE L2 -92 3180 2953 2375 73 0 13 chr3 121347934 121348249 -106176329 - AluY SINE Alu 0 311 1 318 246 200 0 chr3 121348709 121348839 -106175739 - MIR SINE MIR -75 187 32 445 253 106 15 chr3 121349519 121349696 -106174882 + MIR SINE MIR 9 262 0 273 300 110 0 chr3 121349914 121350014 -106174564 + ORSL DNA AcHobo 164 274 -1 4965 209 65 11 chr3 121350582 121351915 -106172663 + Charlie1a DNA MER1_type 1 1405 -50 1163 192 0 9 chr3 121351915 121352160 -106172418 - AluJb SINE Alu 0 312 83 2142 136 3 0 chr3 121353898 121354200 -106170378 - AluSx SINE Alu -9 303 1 2287 129 72 7 chr3 121354974 121355378 -106169200 + L1PA14 LINE L1 5729 6158 -3 237 301 0 24 chr3 121356888 121356971 -106167607 + L2 LINE L2 2015 2095 -1219 220 303 45 30 chr3 121357290 121357356 -106167222 - L2 LINE L2 -12 3260 3194 * 352 350 112 5 chr3 121357322 121357528 -106167050 + MIR SINE MIR 32 259 -3 215 261 78 52 chr3 121357958 121358073 -106166505 - L2 LINE L2 -8 3264 3147 218 222 127 0 chr3 121358833 121358896 -106165682 + MIR SINE MIR 191 261 -1 446 280 123 59 chr3 121360352 121360588 -106163990 + MIR SINE MIR 2 252 -10 246 62 0 0 chr3 121360598 121360630 -106163948 + (CTA)n Simple_repeat Simple_repeat 2 33 0 300 264 129 29 chr3 121360654 121360794 -106163784 - MIR3 SINE MIR -15 193 40 222 292 21 10 chr3 121361126 121361222 -106163356 + (TATATG)n Simple_repeat Simple_repeat 4 100 0 227 270 16 0 chr3 121361672 121361735 -106162843 + CT-rich Low_complexity Low_complexity 1 64 0 2082 123 0 3 chr3 121363260 121363595 -106160983 + AluSx SINE Alu 1 334 0 342 113 32 0 chr3 121363599 121363661 -106160917 - L1MA7 LINE L1 -6 6285 6222 1697 230 42 51 chr3 121363666 121364218 -106160360 - MLT2B3 LTR ERVL -7 547 1 573 131 23 0 chr3 121364218 121364326 -106160252 - L1MA7 LINE L1 -67 6224 6122 1652 147 45 32 chr3 121364338 121364765 -106159813 - L1MA7 LINE L1 -674 5617 5178 261 337 0 11 chr3 121364795 121364887 -106159691 - L2 LINE L2 0 3272 3182 319 186 64 93 chr3 121365455 121365595 -106158983 + MLT1L LTR MaLR 466 601 -14 474 150 46 6 chr3 121366153 121366326 -106158252 + (TA)n Simple_repeat Simple_repeat 1 180 0 2054 120 14 0 chr3 121366326 121366602 -106157976 - AluSx SINE Alu -24 288 9 1838 320 76 44 chr3 121366640 121367901 -106156677 + L2 LINE L2 1486 2786 -528 527 333 90 35 chr3 121367896 121368298 -106156280 + L2 LINE L2 2889 3312 -1 * 23 54 0 0 chr3 121368557 121368594 -106155984 + AT_rich Low_complexity Low_complexity 1 37 0 884 189 0 111 chr3 121369007 121369250 -106155328 - MER20 DNA MER1_type -3 216 1 221 240 0 0 chr3 121369305 121369355 -106155223 + (TTCA)n Simple_repeat Simple_repeat 3 52 0 307 295 70 88 chr3 121370375 121370602 -106153976 - L2 LINE L2 -217 3055 2833 518 284 36 75 chr3 121370875 121371080 -106153498 - HsTC2 DNA Tc2 -1040 858 672 2049 112 14 0 chr3 121371080 121371385 -106153193 + AluSx SINE Alu 1 309 0 518 284 36 75 chr3 121371385 121371562 -106153016 - HsTC2 DNA Tc2 -1226 672 490 231 193 35 162 chr3 121371584 121371781 -106152797 - HsTC2 DNA Tc2 -1617 281 110 683 311 42 50 chr3 121373000 121373383 -106151195 - L2 LINE L2 -916 2398 2019 36 40 0 0 chr3 121373403 121373453 -106151125 + AT_rich Low_complexity Low_complexity 1 50 0 567 252 210 9 chr3 121375022 121375236 -106149342 + MIR SINE MIR 3 259 -3 307 163 54 27 chr3 121376351 121376498 -106148080 + (TATG)n Simple_repeat Simple_repeat 1 151 0 590 271 17 8 chr3 121376516 121376915 -106147663 + LTR16A LTR ERVL 16 491 0 1638 166 100 6 chr3 121378045 121378376 -106146202 + MLT1A1 LTR MaLR 2 363 -2 192 302 126 11 chr3 121378777 121378894 -106145684 - MIR SINE MIR -64 144 33 210 171 0 0 chr3 121379226 121379267 -106145311 + (TG)n Simple_repeat Simple_repeat 2 42 0 561 99 0 0 chr3 121381228 121381309 -106143269 + (TA)n Simple_repeat Simple_repeat 1 81 0 21 0 0 0 chr3 121381388 121381409 -106143169 + AT_rich Low_complexity Low_complexity 1 21 0 2447 84 3 0 chr3 121381477 121381788 -106142790 - AluSp SINE Alu -1 312 1 314 200 95 48 chr3 121382370 121382430 -106142148 + MER94 DNA DNA 11 80 -54 2191 183 72 33 chr3 121382430 121382916 -106141662 - MLT1D LTR MaLR 0 505 1 314 200 95 48 chr3 121382916 121382960 -106141618 + MER94 DNA DNA 80 120 -14 577 274 67 62 chr3 121383011 121383383 -106141195 + L1M3c LINE L1 174 547 -5766 3062 238 104 22 chr3 121384123 121385670 -106138908 + L1M3c LINE L1 911 2391 -3993 317 120 0 0 chr3 121386022 121386072 -106138506 + MADE1 DNA Mariner 31 80 0 184 164 91 18 chr3 121386814 121386869 -106137709 + L2 LINE L2 2428 2486 -828 454 390 99 34 chr3 121387228 121387582 -106136996 + L2 LINE L2 2891 3267 -5 359 316 143 8 chr3 121387637 121387822 -106136756 - MIR SINE MIR -19 243 36 2011 254 47 22 chr3 121387846 121388184 -106136394 + MER90 LTR ERV1 1 362 -252 2297 134 52 45 chr3 121388184 121388565 -106136013 + MSTA LTR MaLR 2 388 -40 2192 108 0 10 chr3 121388565 121388862 -106135716 - AluSx SINE Alu -18 294 1 2297 134 52 45 chr3 121388862 121388904 -106135674 + MSTA LTR MaLR 388 428 0 2011 254 47 22 chr3 121388904 121389164 -106135414 + MER90 LTR ERV1 362 614 0 494 273 30 67 chr3 121389172 121389360 -106135218 + Charlie7 DNA MER1_type 40 214 -2398 1222 201 25 7 chr3 121389360 121389638 -106134940 + L1MB2 LINE L1 5889 6171 0 494 273 30 67 chr3 121389638 121389749 -106134829 + Charlie7 DNA MER1_type 214 328 -2284 * 625 190 8 0 chr3 121389745 121389866 -106134712 - Tigger6 DNA MER2_type -927 156 35 22 35 0 0 chr3 121391028 121391057 -106133521 + AT_rich Low_complexity Low_complexity 1 29 0 7009 161 80 31 chr3 121391147 121393077 -106131501 + L1MCa LINE L1 2 2119 -4307 596 118 12 0 chr3 121393072 121393231 -106131347 + L1MC1 LINE L1 6078 6322 -11 * 2448 76 3 10 chr3 121393232 121393546 -106131032 + AluSp SINE Alu 1 312 -1 36 23 0 0 chr3 121393546 121393589 -106130989 + AT_rich Low_complexity Low_complexity 1 43 0 1477 218 58 7 chr3 121393595 121394027 -106130551 + L1ME2 LINE L1 5433 5886 -278 4888 144 38 14 chr3 121394072 121394974 -106129604 + L1MC1 LINE L1 5400 6322 -11 21 36 0 0 chr3 121396037 121396065 -106128513 + AT_rich Low_complexity Low_complexity 1 28 0 181 231 128 26 chr3 121396395 121396473 -106128105 - L3 LINE CR1 -289 1288 1203 375 273 97 25 chr3 121397829 121398128 -106126450 + L1ME4a LINE L1 5107 5429 -802 21 0 0 0 chr3 121398154 121398175 -106126403 + AT_rich Low_complexity Low_complexity 1 21 0 519 239 194 45 chr3 121398362 121398676 -106125902 + L1ME4a LINE L1 5758 6118 -3 1289 133 58 4 chr3 121398805 121399030 -106125548 + L1MC1 LINE L1 6086 6322 -11 24 0 0 0 chr3 121399225 121399249 -106125329 + AT_rich Low_complexity Low_complexity 1 24 0 703 169 81 0 chr3 121399331 121399501 -106125077 - AluJb SINE Alu 0 317 137 1588 146 47 6 chr3 121399505 121399848 -106124730 - Charlie5 DNA MER1_type -21 2591 2235 22 0 0 0 chr3 121399850 121399872 -106124706 + AT_rich Low_complexity Low_complexity 1 22 0 4227 181 123 46 chr3 121401003 121402294 -106122284 + Charlie1a DNA MER1_type 5 1395 -60 378 278 151 0 chr3 121403104 121403230 -106121348 + MIR SINE MIR 20 164 -98 285 29 0 0 chr3 121405727 121405761 -106118817 + (TG)n Simple_repeat Simple_repeat 2 35 0 327 287 125 70 chr3 121406223 121406551 -106118027 - L1M2 LINE L1 -5724 1125 780 21 0 0 0 chr3 121407379 121407400 -106117178 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr3 121407605 121407627 -106116951 + (CA)n Simple_repeat Simple_repeat 1 22 0 560 306 39 13 chr3 121407648 121407877 -106116701 - MIR SINE MIR 0 262 28 207 276 145 0 chr3 121407954 121408030 -106116548 - MIR3 SINE MIR -13 195 109 1169 146 49 139 chr3 121408352 121408640 -106115938 + AluJo SINE Alu 1 262 -50 823 191 25 0 chr3 121408640 121408797 -106115781 + AluJb SINE Alu 145 305 -7 304 261 0 0 chr3 121410054 121410119 -106114459 - L2 LINE L2 0 3313 3249 405 303 51 40 chr3 121411059 121411234 -106113344 + MIR SINE MIR 32 208 -54 786 199 128 4 chr3 121411656 121411907 -106112671 + L1MA9 LINE L1 5995 6276 -36 22 0 0 0 chr3 121412362 121412384 -106112194 + AT_rich Low_complexity Low_complexity 1 22 0 585 110 99 0 chr3 121412521 121412612 -106111966 - AluSc SINE Alu -9 300 201 1232 147 0 5 chr3 121412712 121412902 -106111676 + AluSg/x SINE Alu 117 305 -5 2619 190 66 226 chr3 121413860 121415261 -106109317 - L2 LINE L2 -4 3309 1685 340 269 15 37 chr3 121415261 121415395 -106109183 - MER94 DNA DNA -3 131 1 2619 190 66 226 chr3 121415395 121415813 -106108765 - L2 LINE L2 -1628 1685 1706 463 179 146 6 chr3 121415813 121416031 -106108547 + ORSL DNA AcHobo 1 274 -1 2619 190 66 226 chr3 121416031 121416799 -106107779 - L2 LINE L2 -1606 1707 818 2323 83 10 7 chr3 121416911 121417211 -106107367 + AluSc SINE Alu 1 301 -8 246 81 0 0 chr3 121417235 121417272 -106107306 + (CA)n Simple_repeat Simple_repeat 2 38 0 231 268 54 18 chr3 121417291 121417403 -106107175 - L1MC/D LINE L1 -1878 5930 5815 753 255 51 5 chr3 121417478 121417694 -106106884 + MER69 DNA AcHobo 6 231 -995 434 181 152 9 chr3 121417767 121417872 -106106706 + MER69 DNA AcHobo 2406 2525 -1 243 352 19 9 chr3 121418232 121418340 -106106238 - MIR3 SINE MIR -1 207 99 624 297 9 23 chr3 121418927 121419146 -106105432 + MARNA DNA Mariner 12 227 -359 310 294 65 53 chr3 121419484 121419654 -106104924 - MIR SINE MIR -42 220 49 2168 134 0 3 chr3 121419693 121419998 -106104580 - AluSx SINE Alu -8 304 1 2090 181 119 51 chr3 121420077 121420606 -106103972 + MLT1F1 LTR MaLR 1 565 -2 483 159 37 19 chr3 121420612 121420719 -106103859 - MER103 DNA DNA -10 156 48 1135 242 42 6 chr3 121420917 121421277 -106103301 + L1MC4 LINE L1 7527 7899 -143 265 370 43 22 chr3 121421730 121421868 -106102710 + L2 LINE L2 3132 3272 0 1757 181 67 34 chr3 121422085 121422532 -106102046 + MLT1C LTR MaLR 6 467 0 607 323 100 15 chr3 121423118 121423459 -106101119 + L2 LINE L2 2019 2388 -926 393 261 153 17 chr3 121423735 121423911 -106100667 + L1ME4a LINE L1 5735 5934 -187 247 259 37 62 chr3 121423928 121424009 -106100569 + HAL1 LINE L1 6 84 -2423 219 346 64 32 chr3 121424044 121424200 -106100378 - L2 LINE L2 -215 3057 2897 460 290 139 16 chr3 121424215 121424460 -106100118 - L2 LINE L2 -562 2752 2478 895 201 87 114 chr3 121426316 121426447 -106098131 + MLT1A1 LTR MaLR 1 134 -231 2153 136 0 0 chr3 121426447 121426755 -106097823 + AluSx SINE Alu 2 309 -3 895 201 87 114 chr3 121426755 121426981 -106097597 + MLT1A1 LTR MaLR 134 348 -17 1882 130 4 7 chr3 121428988 121429264 -106095314 + AluSx SINE Alu 1 275 -37 240 35 0 0 chr3 121429267 121429296 -106095282 + (TC)n Simple_repeat Simple_repeat 2 30 0 222 171 0 0 chr3 121429296 121429337 -106095241 + (TA)n Simple_repeat Simple_repeat 1 41 0 238 292 46 0 chr3 121429837 121429902 -106094676 - MIR SINE MIR -55 153 86 422 122 0 40 chr3 121430220 121430294 -106094284 + MLT1B LTR MaLR 5 75 -315 218 239 164 0 chr3 121430683 121430750 -106093828 + MER5A DNA MER1_type 38 115 -74 776 144 10 153 chr3 121430754 121430956 -106093622 + MER5B DNA MER1_type 6 178 0 208 255 0 21 chr3 121431005 121431052 -106093526 + MER5A DNA MER1_type 116 161 -28 212 300 14 14 chr3 121432257 121432327 -106092251 + L2 LINE L2 2977 3046 -226 718 256 72 88 chr3 121432449 121432894 -106091684 - MLT1H1 LTR MaLR 0 555 118 298 387 32 8 chr3 121432967 121433091 -106091487 + L2 LINE L2 3138 3264 -8 626 312 25 20 chr3 121433825 121434024 -106090554 + MIR3 SINE MIR 3 202 -6 665 297 53 0 chr3 121434183 121434392 -106090186 - MIR SINE MIR -1 261 42 409 272 139 11 chr3 121434874 121435054 -106089524 - MIR SINE MIR -55 207 5 37 39 0 0 chr3 121435197 121435248 -106089330 + AT_rich Low_complexity Low_complexity 1 51 0 2284 100 0 0 chr3 121435319 121435610 -106088968 - AluSx SINE Alu -21 291 1 234 0 0 0 chr3 121435622 121435648 -106088930 + (TTG)n Simple_repeat Simple_repeat 2 27 0 332 324 156 12 chr3 121435884 121436057 -106088521 + MIR SINE MIR 61 258 -4 220 294 0 29 chr3 121436214 121436282 -106088296 + L2 LINE L2 3206 3271 -1 975 242 18 9 chr3 121436468 121436695 -106087883 + L3 LINE CR1 769 997 -580 1162 149 16 11 chr3 121436726 121436914 -106087664 - MER5A DNA MER1_type 0 189 1 221 324 0 14 chr3 121437057 121437128 -106087450 - MIR SINE MIR 0 262 193 624 259 94 25 chr3 121437138 121437339 -106087239 - MIR SINE MIR 0 262 48 520 237 91 52 chr3 121437460 121437859 -106086719 + L1MA10 LINE L1 5761 6322 -5 25 95 0 0 chr3 121438171 121438245 -106086333 + AT_rich Low_complexity Low_complexity 1 74 0 2046 148 0 7 chr3 121439333 121439636 -106084942 - AluJb SINE Alu -11 301 1 467 228 31 109 chr3 121439895 121440088 -106084490 + MER45A DNA AcHobo 1 178 0 26 0 0 49 chr3 121440246 121440262 -106084316 + AT_rich Low_complexity Low_complexity 1 16 -23 2103 132 3 0 chr3 121440262 121440549 -106084029 + AluSx SINE Alu 1 288 -24 26 0 0 49 chr3 121440549 121440573 -106084005 + AT_rich Low_complexity Low_complexity 16 39 0 1665 157 0 27 chr3 121440592 121440885 -106083693 + AluSq SINE Alu 12 296 -17 23 68 0 0 chr3 121440961 121441005 -106083573 + AT_rich Low_complexity Low_complexity 1 44 0 27 29 0 0 chr3 121441529 121441563 -106083015 + AT_rich Low_complexity Low_complexity 1 34 0 507 202 24 107 chr3 121443865 121444033 -106080545 - MIR SINE MIR -27 235 82 718 256 72 88 chr3 121444375 121444820 -106079758 - MLT1H1 LTR MaLR 0 555 118 298 387 32 8 chr3 121444893 121445017 -106079561 + L2 LINE L2 3138 3264 -8 626 312 25 20 chr3 121445751 121445950 -106078628 + MIR3 SINE MIR 3 202 -6 665 297 53 0 chr3 121446109 121446318 -106078260 - MIR SINE MIR -1 261 42 403 272 139 11 chr3 121446800 121446980 -106077598 - MIR SINE MIR -55 207 5 37 39 0 0 chr3 121447123 121447174 -106077404 + AT_rich Low_complexity Low_complexity 1 51 0 2267 100 0 0 chr3 121447245 121447536 -106077042 - AluSx SINE Alu -21 291 1 234 0 0 0 chr3 121447548 121447574 -106077004 + (TTG)n Simple_repeat Simple_repeat 2 27 0 332 324 156 12 chr3 121447810 121447983 -106076595 + MIR SINE MIR 61 258 -4 220 294 0 29 chr3 121448140 121448208 -106076370 + L2 LINE L2 3206 3271 -1 975 242 18 9 chr3 121448394 121448621 -106075957 + L3 LINE CR1 769 997 -580 1162 149 16 11 chr3 121448652 121448840 -106075738 - MER5A DNA MER1_type 0 189 1 221 324 0 14 chr3 121448983 121449054 -106075524 - MIR SINE MIR 0 262 193 624 259 94 25 chr3 121449064 121449265 -106075313 - MIR SINE MIR 0 262 48 520 237 91 52 chr3 121449386 121449785 -106074793 + L1MA10 LINE L1 5761 6322 -5 25 95 0 0 chr3 121450097 121450171 -106074407 + AT_rich Low_complexity Low_complexity 1 74 0 2046 148 0 7 chr3 121451259 121451562 -106073016 - AluJb SINE Alu -11 301 1 467 228 31 109 chr3 121451821 121452014 -106072564 + MER45A DNA AcHobo 1 178 0 26 0 0 49 chr3 121452172 121452188 -106072390 + AT_rich Low_complexity Low_complexity 1 16 -23 2126 129 3 0 chr3 121452188 121452475 -106072103 + AluSx SINE Alu 1 288 -24 26 0 0 49 chr3 121452475 121452499 -106072079 + AT_rich Low_complexity Low_complexity 16 39 0 1611 201 0 10 chr3 121452518 121452817 -106071761 + AluJb SINE Alu 12 307 -5 1973 152 7 0 chr3 121453767 121454056 -106070522 + AluSx SINE Alu 1 291 -21 1577 190 0 32 chr3 121454114 121454424 -106070154 + AluJo SINE Alu 1 300 -12 1809 171 4 0 chr3 121454609 121454913 -106069665 + AluJo SINE Alu 1 305 0 21 71 0 0 chr3 121455001 121455043 -106069535 + AT_rich Low_complexity Low_complexity 1 42 0 187 313 75 25 chr3 121455096 121455176 -106069402 - L2 LINE L2 -21 3251 3168 932 283 71 9 chr3 121455265 121455590 -106068988 - LTR16C LTR ERVL 0 491 147 213 345 189 23 chr3 121456052 121456492 -106068086 - L2 LINE L2 -576 2738 2226 31024 97 13 58 chr3 121456660 121463114 -106061464 + L1PA6 LINE L1 1 6153 -1 225 132 0 0 chr3 121463147 121463185 -106061393 + (CAT)n Simple_repeat Simple_repeat 2 39 0 438 240 198 0 chr3 121463590 121463711 -106060867 - MIR3 SINE MIR -13 195 51 268 184 68 117 chr3 121463975 121464078 -106060500 + L2 LINE L2 3174 3271 -1 1555 198 55 27 chr3 121464567 121464971 -106059607 + L1MA9 LINE L1 5860 6274 -38 3881 205 59 20 chr3 121465188 121465349 -106059229 + L1MB8 LINE L1 4334 4487 -1691 2336 85 0 3 chr3 121465349 121465643 -106058935 + AluY SINE Alu 1 293 -18 3881 205 59 20 chr3 121465643 121466913 -106057665 + L1MB8 LINE L1 4487 5834 -344 684 205 16 0 chr3 121466913 121467040 -106057538 + FLAM_A SINE Alu 1 129 -4 3881 205 59 20 chr3 121467040 121467399 -106057179 + L1MB8 LINE L1 5834 6178 0 25 0 0 0 chr3 121467406 121467431 -106057147 + AT_rich Low_complexity Low_complexity 1 25 0 1637 173 17 17 chr3 121467493 121467794 -106056784 - AluJo SINE Alu -11 301 1 2673 171 53 10 chr3 121468130 121468622 -106055956 + MLT2B2 LTR ERVL 1 513 -2 1262 189 135 27 chr3 121468731 121469147 -106055431 - MLT1C LTR MaLR 0 467 5 643 180 99 19 chr3 121469423 121469584 -106054994 - MER5B DNA MER1_type 0 178 5 367 117 0 0 chr3 121469665 121469725 -106054853 - Alu SINE Alu -2 300 241 372 161 93 124 chr3 121469727 121469888 -106054690 + MER106A DNA MER1_type 80 235 -1 338 280 65 9 chr3 121469896 121470003 -106054575 - MER5A DNA MER1_type -21 168 56 * 406 249 90 31 chr3 121469999 121470181 -106054397 - MIR SINE MIR -4 258 16 1664 172 58 0 chr3 121470581 121470872 -106053706 + AluJb SINE Alu 1 308 -4 1703 183 43 43 chr3 121471057 121471517 -106053061 - Charlie4a DNA MER1_type -46 462 3 358 239 24 138 chr3 121471789 121471956 -106052622 - MER5A DNA MER1_type -22 167 20 215 304 43 104 chr3 121473050 121473280 -106051298 - MIR SINE MIR -34 228 13 573 206 152 59 chr3 121473285 121473489 -106051089 + MER58A DNA MER1_type 1 223 -1 23 68 0 0 chr3 121473607 121473651 -106050927 + AT_rich Low_complexity Low_complexity 1 44 0 355 316 43 22 chr3 121475143 121475282 -106049296 - L2 LINE L2 -6 3307 3166 1629 177 7 14 chr3 121475645 121475928 -106048650 - AluJb SINE Alu -19 293 13 27 49 0 0 chr3 121476309 121476350 -106048228 + AT_rich Low_complexity Low_complexity 1 41 0 1488 272 49 6 chr3 121476357 121476890 -106047688 + L1M4 LINE L1 3268 3823 -2323 1583 203 0 14 chr3 121476890 121477181 -106047397 - AluJo SINE Alu -10 302 16 234 0 0 0 chr3 121477447 121477473 -106047105 + (TTTG)n Simple_repeat Simple_repeat 3 28 0 271 280 81 27 chr3 121477943 121478204 -106046374 - L1MEc LINE L1 -4579 1817 1543 987 288 131 47 chr3 121478331 121479102 -106045476 - L1MEc LINE L1 -4881 1324 489 840 139 0 16 chr3 121479622 121479751 -106044827 + FLAM_C SINE Alu 1 127 -6 1657 234 101 72 chr3 121479770 121480492 -106044086 + LTR41 LTR ERVL 25 767 -6 389 178 0 0 chr3 121480581 121480654 -106043924 - MER116 DNA Mariner -6 74 2 816 261 132 8 chr3 121481144 121481635 -106042943 - L1ME4a LINE L1 -76 6045 5494 2236 127 0 0 chr3 121481914 121482221 -106042357 - AluSq SINE Alu -6 307 1 1112 142 6 0 chr3 121483280 121483449 -106041129 + AluSq SINE Alu 132 301 -12 321 311 153 0 chr3 121483500 121483722 -106040856 - LTR67 LTR ERVL -299 258 3 361 323 138 17 chr3 121484039 121484336 -106040242 - LTR16C LTR ERVL -7 484 152 1693 170 3 28 chr3 121486025 121486345 -106038233 + AluJb SINE Alu 1 313 0 2176 145 0 3 chr3 121486431 121486742 -106037836 - AluSx SINE Alu -2 310 1 265 250 13 0 chr3 121486747 121486823 -106037755 - L1ME4a LINE L1 -205 5916 5840 22 35 0 0 chr3 121486846 121486875 -106037703 + AT_rich Low_complexity Low_complexity 1 29 0 294 161 0 0 chr3 121487012 121487074 -106037504 + L1MB7 LINE L1 6121 6182 -2 21 0 0 0 chr3 121487156 121487177 -106037401 + AT_rich Low_complexity Low_complexity 1 21 0 5009 37 2 2 chr3 121487759 121488359 -106036219 + L1PA5 LINE L1 5555 6154 0 1651 154 56 14 chr3 121488490 121488776 -106035802 - AluJo SINE Alu -3 309 12 440 286 97 19 chr3 121488839 121488993 -106035585 - MIR3 SINE MIR -6 202 37 267 278 87 40 chr3 121490326 121490452 -106034126 + MIR SINE MIR 11 142 -120 267 275 14 0 chr3 121490806 121490875 -106033703 + L2 LINE L2 3239 3308 -5 299 269 77 29 chr3 121491132 121491236 -106033342 + MLT1J2 LTR MaLR 60 168 -282 318 248 76 38 chr3 121491472 121491577 -106033001 + MLT1J2 LTR MaLR 60 168 -282 252 175 32 32 chr3 121492644 121492707 -106031871 + LTR50 LTR ERVL 732 794 -1 189 309 122 36 chr3 121492707 121492846 -106031732 + L2 LINE L2 2930 3080 -192 531 222 0 0 chr3 121493200 121493308 -106031270 - MER58B DNA MER1_type -15 326 219 238 224 216 17 chr3 121493901 121494017 -106030561 - MIR3 SINE MIR -54 154 16 843 266 21 62 chr3 121494542 121494831 -106029747 + L2 LINE L2 3035 3311 -2 518 296 150 19 chr3 121494964 121495177 -106029401 - MIR SINE MIR -17 245 5 1849 169 0 7 chr3 121496046 121496330 -106028248 - AluJb SINE Alu -30 282 1 243 0 0 0 chr3 121496346 121496373 -106028205 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 355 167 313 0 chr3 121496376 121496472 -106028106 - FLAM_C SINE Alu -7 126 1 1776 145 33 36 chr3 121497002 121497305 -106027273 + AluJb SINE Alu 3 304 -8 22 70 0 0 chr3 121497500 121497543 -106027035 + AT_rich Low_complexity Low_complexity 1 43 0 649 230 72 50 chr3 121497614 121497836 -106026742 - MIR SINE MIR -34 228 2 341 288 136 33 chr3 121498521 121498705 -106025873 + L2 LINE L2 3070 3272 0 1690 168 21 24 chr3 121499190 121499481 -106025097 + AluSx SINE Alu 3 292 -20 1683 167 34 24 chr3 121500067 121500360 -106024218 + AluJb SINE Alu 13 308 -4 247 310 0 0 chr3 121501059 121501130 -106023448 + L3 LINE CR1 193 263 -1314 259 291 136 18 chr3 121501444 121501554 -106023024 + L3 LINE CR1 285 407 -1170 21 36 0 0 chr3 121502135 121502163 -106022415 + AT_rich Low_complexity Low_complexity 1 28 0 503 319 98 13 chr3 121502532 121502767 -106021811 + L3 LINE CR1 534 788 -789 770 294 48 4 chr3 121502812 121503043 -106021535 - MIR SINE MIR -18 244 4 1315 253 124 58 chr3 121503077 121503730 -106020848 + L3 LINE CR1 845 1540 -37 227 318 45 81 chr3 121503871 121504069 -106020509 + MIR SINE MIR 26 216 -46 392 270 263 0 chr3 121505107 121505259 -106019319 - MIR SINE MIR -10 252 61 2409 74 0 0 chr3 121505259 121505557 -106019021 + AluSc SINE Alu 1 298 -11 369 184 51 77 chr3 121506526 121506623 -106017955 + Charlie7 DNA MER1_type 2418 2509 -103 698 141 0 107 chr3 121506623 121506772 -106017806 - FLAM_C SINE Alu 0 133 1 369 184 51 77 chr3 121506772 121506870 -106017708 + Charlie7 DNA MER1_type 2509 2608 -4 185 388 26 9 chr3 121507206 121507322 -106017256 + MIR SINE MIR 33 150 -58 2115 113 3 3 chr3 121507411 121507704 -106016874 - AluSx SINE Alu -15 297 5 2296 142 79 2 chr3 121508685 121509142 -106015436 - L1MA3 LINE L1 0 6305 5814 324 293 6 40 chr3 121509209 121509446 -106015132 + CT-rich Low_complexity Low_complexity 1 228 0 224 343 0 30 chr3 121509418 121509584 -106014994 + C-rich Low_complexity Low_complexity 1 161 0 * 23 0 0 0 chr3 121509898 121509921 -106014657 + AT_rich Low_complexity Low_complexity 1 23 0 394 256 124 22 chr3 121510013 121510150 -106014428 - MIR SINE MIR -102 160 10 328 284 148 22 chr3 121510278 121510461 -106014117 + MIR SINE MIR 32 237 -25 222 208 0 0 chr3 121511187 121511240 -106013338 + GA-rich Low_complexity Low_complexity 2 54 0 23 33 0 0 chr3 121511622 121511652 -106012926 + AT_rich Low_complexity Low_complexity 1 30 0 216 323 8 23 chr3 121512095 121512228 -106012350 + CT-rich Low_complexity Low_complexity 2 132 0 23 33 0 0 chr3 121512693 121512723 -106011855 + AT_rich Low_complexity Low_complexity 1 30 0 2012 121 3 3 chr3 121513993 121514295 -106010283 + AluSx SINE Alu 2 303 0 287 211 0 18 chr3 121514674 121514731 -106009847 + L2 LINE L2 3254 3309 -4 296 291 27 39 chr3 121514741 121514884 -106009694 - MIR3 SINE MIR -84 124 11 21 0 0 0 chr3 121515033 121515054 -106009524 + AT_rich Low_complexity Low_complexity 1 21 0 279 114 0 0 chr3 121516056 121516100 -106008478 + (CGG)n Simple_repeat Simple_repeat 3 46 0 204 243 9 37 chr3 121516205 121516312 -106008266 + G-rich Low_complexity Low_complexity 4 107 0 384 218 23 15 chr3 121516781 121516914 -106007664 + GA-rich Low_complexity Low_complexity 4 137 0 23 33 0 0 chr3 121517258 121517288 -106007290 + AT_rich Low_complexity Low_complexity 1 30 0 208 238 0 0 chr3 121517458 121517500 -106007078 + GA-rich Low_complexity Low_complexity 3 44 0 211 224 41 0 chr3 121517641 121517690 -106006888 + G-rich Low_complexity Low_complexity 3 53 0 28 61 0 0 chr3 121517898 121517947 -106006631 + GC_rich Low_complexity Low_complexity 1 49 0 22 106 0 0 chr3 121517979 121518045 -106006533 + GC_rich Low_complexity Low_complexity 1 66 0 22 0 0 0 chr3 121518083 121518105 -106006473 + GC_rich Low_complexity Low_complexity 1 22 0 369 145 0 0 chr3 121518167 121518229 -106006349 + (GGA)n Simple_repeat Simple_repeat 1 62 0 1981 131 25 0 chr3 121522961 121523285 -106001293 + AluSx SINE Alu 1 331 0 29 47 0 0 chr3 121523319 121523362 -106001216 + AT_rich Low_complexity Low_complexity 1 43 0 275 220 178 114 chr3 121523557 121523793 -106000785 + MER112 DNA MER1_type 10 260 0 325 280 28 56 chr3 121523806 121523949 -106000629 - MER5A DNA MER1_type -44 145 7 341 332 84 21 chr3 121524164 121524354 -106000224 + MIR SINE MIR 48 249 -13 1717 170 3 7 chr3 121524779 121525067 -105999511 + AluJb SINE Alu 18 304 -8 1029 231 29 48 chr3 121525803 121526114 -105998464 + MER46C DNA MER2_type 33 337 -1 208 271 42 42 chr3 121527273 121527369 -105997209 + CT-rich Low_complexity Low_complexity 1 96 0 * 279 290 0 14 chr3 121527301 121527370 -105997208 + polypyrimidine Low_complexity Low_complexity 1 68 0 405 289 164 7 chr3 121527835 121527987 -105996591 - MIR SINE MIR -54 208 33 22 0 0 0 chr3 121528334 121528356 -105996222 + AT_rich Low_complexity Low_complexity 1 22 0 2130 121 0 20 chr3 121528445 121528750 -105995828 - AluSx SINE Alu -13 299 1 228 320 62 21 chr3 121529569 121529666 -105994912 - L2 LINE L2 -4 3268 3168 1732 168 14 30 chr3 121531644 121531941 -105992637 - AluJo SINE Alu -20 292 1 197 322 83 8 chr3 121532037 121532158 -105992420 - L2 LINE L2 -1 3312 3183 355 222 56 17 chr3 121532433 121532613 -105991965 - Charlie7 DNA MER1_type -8 2604 2418 285 241 19 46 chr3 121532584 121532692 -105991886 - Charlie7 DNA MER1_type -2507 105 1 * 395 211 179 0 chr3 121532724 121532819 -105991759 + L2 LINE L2 3198 3309 -4 325 263 0 0 chr3 121532894 121532970 -105991608 + L2 LINE L2 3229 3304 -9 332 331 41 0 chr3 121533980 121534125 -105990453 - MIR SINE MIR -74 188 38 1014 172 6 12 chr3 121534672 121534841 -105989737 - FRAM SINE Alu -16 160 1 21 36 0 0 chr3 121534966 121534994 -105989584 + AT_rich Low_complexity Low_complexity 1 28 0 511 266 52 12 chr3 121535476 121535649 -105988929 - MIR SINE MIR -70 192 13 215 301 98 46 chr3 121536007 121536160 -105988418 - MIR3 SINE MIR -7 201 41 355 333 0 0 chr3 121537051 121537153 -105987425 - MER91B DNA MER1_type -2 188 87 360 280 64 24 chr3 121537167 121537292 -105987286 - MER91B DNA MER1_type -60 130 1 925 118 7 7 chr3 121537439 121537574 -105987004 + AluSq/x SINE Alu 1 135 -177 2185 82 3 39 chr3 121537575 121537880 -105986698 + AluY SINE Alu 1 294 -17 21 57 0 0 chr3 121540432 121540467 -105984111 + AT_rich Low_complexity Low_complexity 1 35 0 202 311 16 0 chr3 121540584 121540645 -105983933 + C-rich Low_complexity Low_complexity 6 67 0 210 316 62 0 chr3 121540666 121540747 -105983831 - MIR SINE MIR -59 149 63 464 291 55 25 chr3 121540933 121541132 -105983446 + MIR SINE MIR 9 213 -49 3702 139 13 10 chr3 121541396 121542013 -105982565 + L1PA16 LINE L1 5547 6165 -1 582 275 31 59 chr3 121542032 121542254 -105982324 - L2 LINE L2 -4 3309 3094 22 0 0 0 chr3 121542718 121542740 -105981838 + AT_rich Low_complexity Low_complexity 1 22 0 246 324 84 28 chr3 121542893 121543035 -105981543 - L2 LINE L2 0 3313 3164 186 147 59 0 chr3 121543077 121543111 -105981467 + L2 LINE L2 3256 3291 -22 235 394 55 12 chr3 121544475 121544640 -105979938 + MIR3 SINE MIR 33 204 -4 2000 127 3 19 chr3 121544908 121545222 -105979356 + AluJb SINE Alu 1 309 -3 378 327 103 19 chr3 121546050 121546264 -105978314 - MIR SINE MIR 0 262 31 236 309 25 12 chr3 121546856 121546937 -105977641 + MER5A DNA MER1_type 99 180 -9 404 138 0 0 chr3 121547522 121547580 -105976998 + Alu SINE Alu 234 291 -11 2374 67 3 0 chr3 121547635 121547951 -105976627 + AluSp SINE Alu 1 317 0 23 0 0 0 chr3 121548785 121548808 -105975770 + AT_rich Low_complexity Low_complexity 1 23 0 448 180 23 62 chr3 121549866 121549994 -105974584 - L1ME2 LINE L1 0 6164 6042 622 205 115 19 chr3 121550773 121550929 -105973649 + MER5A DNA MER1_type 17 187 -2 620 264 67 76 chr3 121550929 121551055 -105973523 - LTR16A1 LTR ERVL -112 345 219 2096 118 7 3 chr3 121551055 121551351 -105973227 + AluSx SINE Alu 1 297 -15 620 264 67 76 chr3 121551351 121551554 -105973024 - LTR16A1 LTR ERVL -238 219 19 458 229 110 0 chr3 121551558 121551667 -105972911 - MIR SINE MIR -138 124 4 258 341 88 37 chr3 121551694 121551911 -105972667 - L2 LINE L2 -148 3124 2897 189 324 155 29 chr3 121552342 121552549 -105972029 - L2 LINE L2 -905 2409 2177 1707 182 3 7 chr3 121552595 121552892 -105971686 - AluJb SINE Alu -16 296 1 1097 178 42 5 chr3 121553784 121553975 -105970603 - MER20 DNA MER1_type -18 201 4 401 313 79 11 chr3 121554133 121554411 -105970167 + L1MC/D LINE L1 5527 5823 -1985 436 309 25 37 chr3 121556542 121556704 -105967874 + L2 LINE L2 3154 3313 0 330 286 116 10 chr3 121556873 121557079 -105967499 - L1ME2 LINE L1 -707 5467 5294 618 259 103 78 chr3 121557592 121558291 -105966287 - L1ME2 LINE L1 -1384 4762 4082 1854 129 41 0 chr3 121558291 121558604 -105965974 - AluSg1 SINE Alu 0 324 1 618 259 103 78 chr3 121558604 121558739 -105965839 - L1ME2 LINE L1 -2064 4082 3952 2447 87 0 3 chr3 121558739 121559049 -105965529 + AluSq SINE Alu 1 309 -4 618 259 103 78 chr3 121559049 121559226 -105965352 - L1ME2 LINE L1 -2194 3952 3722 983 314 83 44 chr3 121559411 121560528 -105964050 - L1ME2 LINE L1 -2629 3517 2203 262 274 70 82 chr3 121560918 121561112 -105963466 - L1MEd LINE L1 -1027 1463 1268 2381 68 17 0 chr3 121561112 121561405 -105963173 - AluY SINE Alu -13 298 1 262 274 70 82 chr3 121561405 121561691 -105962887 - L1MEd LINE L1 -1222 1268 904 283 248 136 32 chr3 121561792 121561917 -105962661 + MIR SINE MIR 52 189 -73 249 193 0 148 chr3 121561947 121562035 -105962543 - MIR SINE MIR -24 238 164 33 0 0 0 chr3 121562222 121562255 -105962323 + AT_rich Low_complexity Low_complexity 1 33 0 724 109 22 29 chr3 121562255 121562393 -105962185 - LTR7 LTR ERV1 -38 412 276 9816 135 7 31 chr3 121562393 121564051 -105960527 - HERVH LTR ERV1 -5295 2418 800 1933 187 53 31 chr3 121564109 121564558 -105960020 - HERVH LTR ERV1 -7254 459 1 762 75 0 19 chr3 121564558 121564665 -105959913 - LTR7 LTR ERV1 0 450 346 218 274 20 0 chr3 121564708 121564759 -105959819 + (TG)n Simple_repeat Simple_repeat 1 52 0 2069 88 11 18 chr3 121566126 121566434 -105958144 + AluSg SINE Alu 1 306 0 2105 104 14 7 chr3 121566583 121566872 -105957706 - AluSp SINE Alu -21 292 2 450 343 50 14 chr3 121566964 121567183 -105957395 - MIR SINE MIR -2 260 34 24 85 0 0 chr3 121567513 121567572 -105957006 + AT_rich Low_complexity Low_complexity 1 59 0 884 195 0 0 chr3 121568738 121568887 -105955691 + AluJb SINE Alu 137 285 -27 252 197 155 28 chr3 121568991 121569062 -105955516 - MIR SINE MIR -70 192 113 2115 109 0 7 chr3 121569700 121570009 -105954569 - AluSc SINE Alu 0 307 1 515 202 24 107 chr3 121570333 121570501 -105954077 + MIR SINE MIR 82 235 -27 27 29 0 0 chr3 121572803 121572837 -105951741 + AT_rich Low_complexity Low_complexity 1 34 0 23 68 0 0 chr3 121573361 121573405 -105951173 + AT_rich Low_complexity Low_complexity 1 44 0 2207 98 3 10 chr3 121573481 121573778 -105950800 - AluSq SINE Alu -17 296 2 23 33 0 0 chr3 121575048 121575078 -105949500 + AT_rich Low_complexity Low_complexity 1 30 0 216 253 152 0 chr3 121576131 121576210 -105948368 - MIR3 SINE MIR -23 185 95 1149 161 140 0 chr3 121576314 121576557 -105948021 - L1MA4 LINE L1 -5 6295 6019 25 31 0 0 chr3 121576715 121576747 -105947831 + AT_rich Low_complexity Low_complexity 1 32 0 667 0 96 24 chr3 121576760 121576885 -105947693 + (TA)n Simple_repeat Simple_repeat 1 312 0 667 0 96 24 chr3 121576885 121577052 -105947526 + (TA)n Simple_repeat Simple_repeat 1 179 0 210 303 81 49 chr3 121577337 121577522 -105947056 - L2 LINE L2 -112 3201 3011 1347 181 67 17 chr3 121577527 121577825 -105946753 - AluSq SINE Alu 0 313 1 293 323 65 14 chr3 121578002 121578219 -105946359 - L2 LINE L2 -1363 1951 1724 2191 110 0 13 chr3 121579603 121579903 -105944675 - AluSq SINE Alu -17 296 1 987 149 15 65 chr3 121580011 121580212 -105944366 + AluSg/x SINE Alu 109 299 -11 228 200 0 0 chr3 121580676 121580731 -105943847 + (TTCA)n Simple_repeat Simple_repeat 4 58 0 271 333 103 23 chr3 121580851 121581025 -105943553 + L2 LINE L2 3120 3307 -6 427 303 17 8 chr3 121581369 121581488 -105943090 + MIR SINE MIR 15 134 -128 29 0 0 0 chr3 121581719 121581748 -105942830 + AT_rich Low_complexity Low_complexity 1 29 0 1838 153 103 5 chr3 121583104 121583491 -105941087 - L1MA4 LINE L1 -4 6296 5874 1603 163 24 3 chr3 121584343 121584631 -105939947 - AluJo SINE Alu -18 294 1 1001 146 53 18 chr3 121585068 121585239 -105939339 + AluJb SINE Alu 136 312 0 183 339 0 18 chr3 121586007 121586063 -105938515 - L2 LINE L2 -15 3298 3244 215 348 97 58 chr3 121586379 121586586 -105937992 - L2 LINE L2 -16 3256 3042 187 31 62 0 chr3 121586614 121586646 -105937932 + A-rich Low_complexity Low_complexity 2 35 0 674 270 5 42 chr3 121587399 121587588 -105936990 + MIR SINE MIR 22 203 -59 23 0 0 0 chr3 121587611 121587634 -105936944 + AT_rich Low_complexity Low_complexity 1 23 0 416 248 124 22 chr3 121587726 121587863 -105936715 - MIR SINE MIR -102 160 10 315 290 148 22 chr3 121587991 121588174 -105936404 + MIR SINE MIR 32 237 -25 789 192 55 0 chr3 121588640 121588786 -105935792 - Tigger2 DNA MER2_type -11 2707 2554 1296 144 0 5 chr3 121588788 121588996 -105935582 - Tigger2 DNA MER2_type -2511 207 1 216 300 14 41 chr3 121589285 121589428 -105935150 - MIR SINE MIR -67 141 26 1511 219 231 19 chr3 121589823 121590653 -105933925 - Charlie2 DNA MER1_type 0 2862 1857 944 264 50 25 chr3 121590645 121590694 -105933884 - Charlie2 DNA MER1_type -2532 330 284 * 270 0 0 0 chr3 121590694 121590724 -105933854 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 944 264 50 25 chr3 121590724 121590996 -105933582 - Charlie2 DNA MER1_type -2578 284 1 354 344 99 0 chr3 121591427 121591578 -105933000 - MIR3 SINE MIR -11 197 32 10251 122 20 8 chr3 121593716 121595290 -105929288 + Tigger1 DNA MER2_type 1 1592 -826 830 125 31 23 chr3 121595291 121595419 -105929159 + FLAM_C SINE Alu 1 129 -14 4380 152 30 44 chr3 121595420 121595806 -105928772 + Tigger1 DNA MER2_type 1583 1973 -445 2190 92 0 4 chr3 121595806 121596122 -105928456 - AluY SINE Alu 0 315 1 4380 152 30 44 chr3 121596122 121596233 -105928345 + Tigger1 DNA MER2_type 1973 2084 -334 2240 106 0 3 chr3 121596233 121596536 -105928042 - AluSg SINE Alu -8 302 1 4380 152 30 44 chr3 121596536 121596884 -105927694 + Tigger1 DNA MER2_type 2084 2418 0 593 280 6 12 chr3 121596895 121597063 -105927515 - MER5B DNA MER1_type -2 176 10 1295 265 43 40 chr3 121597157 121597580 -105926998 - L3 LINE CR1 -289 1288 865 301 371 16 0 chr3 121597905 121598029 -105926549 - L3 LINE CR1 -1117 460 335 253 189 122 14 chr3 121598555 121598629 -105925949 - MIR3 SINE MIR -31 177 96 15141 138 33 14 chr3 121599512 121599961 -105924617 - L1MA3 LINE L1 0 7724 7285 1917 123 58 0 chr3 121599961 121600238 -105924340 - AluSx SINE Alu -17 295 3 15141 138 33 14 chr3 121600238 121606041 -105918537 - L1MA3 LINE L1 -439 7285 1186 1447 36 6 0 chr3 121606049 121606217 -105918361 - AluY SINE Alu -14 297 129 2363 88 0 0 chr3 121606802 121607109 -105917469 - AluSc SINE Alu -2 307 1 958 178 11 0 chr3 121607397 121607577 -105917001 + MER2 DNA MER2_type 30 211 -134 787 343 123 43 chr3 121607687 121608175 -105916403 - L2 LINE L2 -354 2960 2392 1514 181 86 12 chr3 121608175 121608512 -105916066 - MLT1A1 LTR MaLR -3 362 1 787 343 123 43 chr3 121608512 121608761 -105915817 - L2 LINE L2 -922 2392 2164 324 0 0 0 chr3 121608865 121608901 -105915677 + (T)n Simple_repeat Simple_repeat 1 36 0 572 128 0 29 chr3 121608924 121608987 -105915591 - L1MD2 LINE L1 0 6359 6299 1231 171 25 38 chr3 121608987 121609226 -105915352 + MER46A DNA MER2_type 1 236 0 572 128 0 29 chr3 121609226 121609264 -105915314 - L1MD2 LINE L1 -60 6299 6261 5272 229 202 28 chr3 121609303 121612208 -105912370 - L1MC/D LINE L1 -645 5991 2564 7799 214 89 25 chr3 121612224 121614346 -105910232 - L1MC/D LINE L1 -4282 2258 1 1446 280 62 25 chr3 121614837 121615401 -105909177 - L1ME1 LINE L1 -50 6116 5532 748 275 18 73 chr3 121615405 121615802 -105908776 - L1MDb LINE L1 -5273 1136 762 799 223 17 6 chr3 121616452 121616627 -105907951 - MER69A DNA AcHobo 0 177 1 183 303 64 37 chr3 121616643 121616752 -105907826 - MIR SINE MIR -19 243 132 678 243 122 0 chr3 121616904 121617118 -105907460 + MIR SINE MIR 2 241 -21 29 0 0 0 chr3 121617208 121617237 -105907341 + AT_rich Low_complexity Low_complexity 1 29 0 2327 106 0 0 chr3 121617445 121617747 -105906831 + AluSx SINE Alu 1 302 -10 225 283 47 56 chr3 121618003 121618138 -105906440 - L1MEd LINE L1 -5013 1106 972 1901 136 10 30 chr3 121618138 121618440 -105906138 - AluSx SINE Alu -14 298 3 225 283 47 56 chr3 121618440 121618537 -105906041 - L1MEd LINE L1 -5147 972 876 373 78 0 0 chr3 121618687 121618738 -105905840 - L1PA16 LINE L1 -9 6157 6107 380 141 0 0 chr3 121618746 121618817 -105905761 - L1MA5A LINE L1 -6 6291 6221 251 259 107 71 chr3 121619185 121619221 -105905357 + MIR SINE MIR 128 161 -101 2042 185 92 37 chr3 121619221 121619513 -105905065 - MLT1F LTR MaLR 0 542 209 2090 135 10 0 chr3 121619513 121619809 -105904769 - AluSx SINE Alu -13 299 1 2042 185 92 37 chr3 121619809 121620029 -105904549 - MLT1F LTR MaLR -333 209 2 251 259 107 71 chr3 121620029 121620104 -105904474 + MIR SINE MIR 161 243 -19 465 301 0 33 chr3 121622957 121623140 -105901438 - MER5B DNA MER1_type -1 177 1 2069 123 0 26 chr3 121624930 121625239 -105899339 - AluSx SINE Alu -11 301 1 22 56 0 0 chr3 121626141 121626177 -105898401 + AT_rich Low_complexity Low_complexity 1 36 0 615 286 94 38 chr3 121626504 121626770 -105897808 - L3 LINE CR1 -148 1429 1149 205 325 13 0 chr3 121627669 121627746 -105896832 + L2 LINE L2 2465 2542 -772 2170 99 3 0 chr3 121628571 121628863 -105895715 - AluSg SINE Alu -15 295 3 363 299 15 52 chr3 121628984 121629118 -105895460 - MLT1K LTR MaLR -360 228 100 385 200 47 0 chr3 121629929 121630014 -105894564 - L1MC1 LINE L1 -6 6327 6239 192 350 17 0 chr3 121630430 121630490 -105894088 + MIR3 SINE MIR 147 207 -1 342 273 23 45 chr3 121630564 121630696 -105893882 + MIR3 SINE MIR 43 171 -37 248 200 40 0 chr3 121630709 121630759 -105893819 + CT-rich Low_complexity Low_complexity 1 52 0 1356 240 6 13 chr3 121630759 121631071 -105893507 - AluJo SINE Alu -1 311 2 841 159 0 22 chr3 121631072 121631210 -105893368 - AluJo SINE Alu -177 135 1 1569 174 3 44 chr3 121631495 121631635 -105892943 + AluJb SINE Alu 3 126 -186 372 22 0 0 chr3 121631635 121631680 -105892898 + (CA)n Simple_repeat Simple_repeat 2 46 0 1569 174 3 44 chr3 121631680 121631837 -105892741 + AluJb SINE Alu 126 288 -24 403 272 87 17 chr3 121632852 121633025 -105891553 - MIR SINE MIR -4 258 74 2053 121 4 4 chr3 121633522 121633803 -105890775 - AluSx SINE Alu -29 283 3 1978 167 0 0 chr3 121633917 121634228 -105890350 - AluSx SINE Alu -1 311 1 21 0 0 0 chr3 121638132 121638153 -105886425 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr3 121639387 121639422 -105885156 + AT_rich Low_complexity Low_complexity 1 35 0 841 296 36 17 chr3 121640533 121640834 -105883744 - MLT1I LTR MaLR -2 407 101 288 256 35 12 chr3 121640931 121641017 -105883561 - MER103 DNA DNA -34 132 45 2383 112 25 8 chr3 121641770 121642128 -105882450 - THE1B LTR MaLR 0 364 1 581 281 41 45 chr3 121642155 121642397 -105882181 + MIR SINE MIR 16 256 -6 2034 112 54 36 chr3 121642983 121643314 -105881264 + MER1B DNA MER1_type 1 337 0 1281 183 55 78 chr3 121643610 121644009 -105880569 - MLT1B LTR MaLR 0 390 1 1405 49 16 22 chr3 121644679 121644863 -105879715 - MER107 DNA MER1_type -10 187 5 204 225 0 0 chr3 121645678 121645718 -105878860 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 300 284 25 12 chr3 121645782 121645863 -105878715 + L2 LINE L2 3183 3264 -8 199 71 48 0 chr3 121647517 121647559 -105877019 + T-rich Low_complexity Low_complexity 1 44 0 224 277 241 28 chr3 121647575 121647716 -105876862 + MIR SINE MIR 18 188 -74 1008 171 6 11 chr3 121648357 121648533 -105876045 - FRAM SINE Alu -8 168 1 2479 82 0 0 chr3 121648540 121648845 -105875733 - AluY SINE Alu -6 305 1 27 0 0 0 chr3 121648881 121648908 -105875670 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr3 121649373 121649396 -105875182 + AT_rich Low_complexity Low_complexity 1 23 0 195 234 65 91 chr3 121649576 121649653 -105874925 - L2 LINE L2 -12 3260 3186 419 346 25 12 chr3 121651597 121651759 -105872819 - MIR SINE MIR -79 183 20 212 254 67 60 chr3 121651914 121652048 -105872530 - MIR SINE MIR -6 256 122 23 0 0 0 chr3 121652080 121652103 -105872475 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr3 121652205 121652232 -105872346 + AT_rich Low_complexity Low_complexity 1 27 0 335 252 27 0 chr3 121652260 121652371 -105872207 - L1ME2 LINE L1 -10 6154 6041 799 233 0 6 chr3 121652381 121652544 -105872034 - MIR SINE MIR -99 163 2 180 0 0 0 chr3 121653351 121653371 -105871207 + (A)n Simple_repeat Simple_repeat 1 20 0 380 266 118 24 chr3 121654139 121654308 -105870270 + MIR SINE MIR 1 185 -77 307 304 89 0 chr3 121655594 121655706 -105868872 + MIR SINE MIR 51 172 -90 477 265 57 100 chr3 121656429 121656634 -105867944 - L1ME2 LINE L1 -221 5949 5737 2303 109 0 0 chr3 121656634 121656945 -105867633 - AluY SINE Alu 0 311 1 477 265 57 100 chr3 121656945 121657202 -105867376 - L1ME2 LINE L1 -433 5737 5505 272 329 44 22 chr3 121658129 121658266 -105866312 + MIR3 SINE MIR 64 203 -5 27 0 0 26 chr3 121659404 121659417 -105865161 + AT_rich Low_complexity Low_complexity 1 13 -24 2279 75 0 20 chr3 121659417 121659710 -105864868 - AluSc SINE Alu -22 287 1 27 0 0 26 chr3 121659710 121659734 -105864844 + AT_rich Low_complexity Low_complexity 13 37 0 29 28 0 0 chr3 121660306 121660342 -105864236 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr3 121660367 121660391 -105864187 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr3 121661942 121661964 -105862614 + (ATG)n Simple_repeat Simple_repeat 1 22 0 1501 127 49 8 chr3 121663142 121663409 -105861169 + L1MA5A LINE L1 6020 6297 0 421 281 82 20 chr3 121665793 121665939 -105858639 + MIR3 SINE MIR 53 207 -1 399 312 83 6 chr3 121668535 121668692 -105855886 + MIR3 SINE MIR 3 171 -37 191 339 0 0 chr3 121669907 121669972 -105854606 - L3 LINE CR1 -41 1536 1472 1393 135 31 4 chr3 121670264 121670493 -105854085 - Tigger5 DNA MER2_type 0 2323 2089 407 221 53 0 chr3 121670495 121670590 -105853988 + Tigger5 DNA MER2_type 2177 2276 -47 269 263 20 46 chr3 121670777 121670929 -105853649 - L1ME4a LINE L1 -48 6073 5926 233 220 100 0 chr3 121671180 121671230 -105853348 + L2 LINE L2 3255 3309 -4 1630 188 0 23 chr3 121671278 121671582 -105852996 + AluJo SINE Alu 1 297 -15 707 228 60 56 chr3 121671647 121671862 -105852716 - MIR SINE MIR 0 262 47 323 301 12 0 chr3 121672312 121672395 -105852183 - L2 LINE L2 -3 3269 3186 24 32 0 0 chr3 121674182 121674213 -105850365 + AT_rich Low_complexity Low_complexity 1 31 0 203 179 0 0 chr3 121679247 121679286 -105845292 + T-rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr3 121679786 121679812 -105844766 + AT_rich Low_complexity Low_complexity 1 26 0 1739 153 3 28 chr3 121680613 121680931 -105843647 + AluJb SINE Alu 3 313 0 2136 145 0 3 chr3 121681017 121681327 -105843251 - AluSx SINE Alu -3 309 1 283 250 13 0 chr3 121681332 121681408 -105843170 - L1ME4a LINE L1 -205 5916 5840 22 35 0 0 chr3 121681431 121681460 -105843118 + AT_rich Low_complexity Low_complexity 1 29 0 300 161 0 0 chr3 121681597 121681659 -105842919 + L1MB7 LINE L1 6121 6182 -2 21 0 0 0 chr3 121681741 121681762 -105842816 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 121683512 121683536 -105841042 + AT_rich Low_complexity Low_complexity 1 24 0 29 28 0 0 chr3 121683561 121683597 -105840981 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr3 121684169 121684193 -105840385 + AT_rich Low_complexity Low_complexity 1 24 0 2279 75 0 20 chr3 121684193 121684486 -105840092 + AluSc SINE Alu 1 287 -22 23350 28 1 8 chr3 121685634 121689248 -105835330 + L1PA3 LINE L1 2576 6155 0 199 267 138 43 chr3 121689603 121689719 -105834859 + L2 LINE L2 3187 3313 0 32 0 0 0 chr3 121690345 121690377 -105834201 + GC_rich Low_complexity Low_complexity 1 32 0 187 340 109 84 chr3 121691021 121691210 -105833368 + L2 LINE L2 2949 3149 -123 1831 194 88 3 chr3 121691210 121691575 -105833003 + MSTD LTR MaLR 1 396 0 187 340 109 84 chr3 121691575 121691670 -105832908 + L2 LINE L2 3149 3240 -32 343 296 151 0 chr3 121691797 121691956 -105832622 - MIR SINE MIR -47 215 33 909 212 25 65 chr3 121692627 121692872 -105831706 - MER46A DNA MER2_type -1 235 1 222 315 0 0 chr3 121692912 121692966 -105831612 + L2 LINE L2 3025 3078 -194 29 90 0 0 chr3 121693020 121693098 -105831480 + AT_rich Low_complexity Low_complexity 1 78 0 578 272 41 62 chr3 121693202 121693445 -105831133 - MIR SINE MIR -1 261 24 596 267 58 0 chr3 121693572 121693763 -105830815 - MIR SINE MIR -12 250 49 195 244 95 26 chr3 121694621 121694751 -105829827 - MIR3 SINE MIR -63 145 9 253 220 0 0 chr3 121695812 121695862 -105828716 + L2 LINE L2 3264 3313 0 23 33 0 0 chr3 121698551 121698581 -105825997 + AT_rich Low_complexity Low_complexity 1 30 0 283 238 26 66 chr3 121698633 121698784 -105825794 + L1ME4a LINE L1 5973 6117 -4 1660 203 0 25 chr3 121700987 121701302 -105823276 - AluJo SINE Alu -5 307 1 199 267 138 43 chr3 121701782 121701898 -105822680 - L2 LINE L2 0 3313 3187 42451 36 22 2 chr3 121702253 121708316 -105816262 - L1PA3 LINE L1 0 6155 3 30 27 0 0 chr3 121708398 121708435 -105816143 + AT_rich Low_complexity Low_complexity 1 37 0 2176 122 0 3 chr3 121708465 121708761 -105815817 + AluSg SINE Alu 1 295 -15 423 332 107 31 chr3 121709112 121709619 -105814959 - L2 LINE L2 0 3272 2704 381 43 0 0 chr3 121710503 121710550 -105814028 + (TTA)n Simple_repeat Simple_repeat 3 49 0 6579 18 1 4 chr3 121710550 121711314 -105813264 - L1PA4 LINE L1 -18 6137 5376 513 336 68 17 chr3 121711344 121711579 -105812999 + MIR SINE MIR 2 248 -14 340 272 22 43 chr3 121711595 121711687 -105812891 + MIR SINE MIR 2 91 -171 483 188 97 38 chr3 121711872 121712029 -105812549 + MIR SINE MIR 96 262 0 375 293 153 6 chr3 121714135 121714292 -105810286 + MIR SINE MIR 36 215 -47 187 340 109 84 chr3 121714419 121714514 -105810064 - L2 LINE L2 -32 3240 3149 1831 194 88 3 chr3 121714514 121714879 -105809699 - MSTD LTR MaLR 0 396 1 187 340 109 84 chr3 121714879 121715068 -105809510 - L2 LINE L2 -123 3149 2949 259 203 307 37 chr3 121715835 121715998 -105808580 - MIR SINE MIR -36 226 20 2130 110 3 13 chr3 121716117 121716416 -105808162 - AluSc SINE Alu -11 298 3 224 293 0 0 chr3 121717896 121717954 -105806624 + (CATA)n Simple_repeat Simple_repeat 3 60 0 2349 91 0 0 chr3 121718483 121718780 -105805798 + AluSg SINE Alu 1 297 -13 355 311 59 45 chr3 121719063 121719349 -105805229 + L1P LINE L1 4775 5064 -1082 186 43 0 0 chr3 121719689 121719712 -105804866 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 198 171 0 0 chr3 121720489 121720530 -105804048 + CT-rich Low_complexity Low_complexity 2 42 0 180 152 0 0 chr3 121720669 121720702 -105803876 + GA-rich Low_complexity Low_complexity 3 35 0 647 265 30 50 chr3 121721292 121721492 -105803086 + L2 LINE L2 3118 3313 0 181 268 71 0 chr3 121721506 121721562 -105803016 - L3 LINE CR1 -868 709 650 192 315 69 46 chr3 121721562 121721778 -105802800 + L2 LINE L2 1285 1505 -1809 1535 217 0 17 chr3 121721966 121722266 -105802312 - AluJb SINE Alu -17 295 1 1419 285 30 44 chr3 121722266 121722856 -105801722 + L2 LINE L2 2148 2729 -585 387 193 9 101 chr3 121722859 121722968 -105801610 + L2 LINE L2 3204 3302 -11 306 322 186 37 chr3 121722981 121723525 -105801053 + L2 LINE L2 2138 2762 -552 33 25 0 0 chr3 121724013 121724053 -105800525 + AT_rich Low_complexity Low_complexity 1 40 0 2108 120 23 10 chr3 121724053 121724361 -105800217 - AluSx SINE Alu 0 312 1 2296 90 3 0 chr3 121724883 121725172 -105799406 - AluSc SINE Alu -19 290 1 999 187 16 21 chr3 121725284 121725471 -105799107 + MER5A DNA MER1_type 3 188 -1 242 139 0 0 chr3 121725495 121725531 -105799047 + Tigger4(Zombi) DNA MER2_type -2 33 -2698 * 443 83 0 17 chr3 121725514 121725574 -105799004 + Tigger4(Zombi) DNA MER2_type 2673 2731 0 439 318 110 13 chr3 121726306 121726460 -105798118 - L2 LINE L2 0 3272 3104 23 0 0 0 chr3 121726552 121726575 -105798003 + AT_rich Low_complexity Low_complexity 1 23 0 258 289 33 79 chr3 121727409 121727561 -105797017 + MIR3 SINE MIR 62 206 -2 422 218 24 12 chr3 121728245 121728415 -105796163 + (TTA)n Simple_repeat Simple_repeat 1 172 0 244 297 0 14 chr3 121729156 121729230 -105795348 - L2 LINE L2 -5 3267 3195 201 349 24 0 chr3 121730218 121730301 -105794277 - MIR SINE MIR -63 145 61 22 35 0 0 chr3 121731203 121731232 -105793346 + AT_rich Low_complexity Low_complexity 1 29 0 196 0 118 0 chr3 121731439 121731473 -105793105 + T-rich Low_complexity Low_complexity 1 38 0 259 250 109 83 chr3 121731842 121731998 -105792580 + MIR SINE MIR 97 256 -6 21 36 0 0 chr3 121732281 121732309 -105792269 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 121732456 121732480 -105792098 + AT_rich Low_complexity Low_complexity 1 24 0 11191 31 3 0 chr3 121733495 121735600 -105788978 - L1PA5 LINE L1 0 6154 4046 183 268 0 36 chr3 121736457 121736513 -105788065 + L2 LINE L2 3186 3239 -74 355 318 9 0 chr3 121736847 121736954 -105787624 + L2 LINE L2 3192 3299 -14 297 273 77 63 chr3 121738212 121738355 -105786223 - MIR SINE MIR -41 221 77 254 252 126 50 chr3 121738388 121738547 -105786031 - MIR SINE MIR -81 181 11 1036 174 0 17 chr3 121740000 121740178 -105784400 + AluJo SINE Alu 115 289 -23 829 181 0 7 chr3 121742335 121742479 -105782099 - FRAM SINE Alu -23 153 11 23 0 0 0 chr3 121742688 121742711 -105781867 + AT_rich Low_complexity Low_complexity 1 23 0 1530 170 97 0 chr3 121743781 121744040 -105780538 - AluJb SINE Alu -28 284 1 23 33 0 0 chr3 121747664 121747694 -105776884 + AT_rich Low_complexity Low_complexity 1 30 0 327 208 32 71 chr3 121747745 121747899 -105776679 + L1ME4a LINE L1 5973 6120 -1 272 237 118 13 chr3 121748042 121748118 -105776460 - L2 LINE L2 0 3313 3230 229 276 11 35 chr3 121748218 121748305 -105776273 + MIR3 SINE MIR 123 207 -1 1656 189 30 3 chr3 121749366 121749663 -105774915 - AluJo SINE Alu -7 305 1 829 115 8 16 chr3 121750530 121750652 -105773926 - FLAM_C SINE Alu -11 132 12 240 59 0 0 chr3 121751132 121751166 -105773412 + (TG)n Simple_repeat Simple_repeat 2 35 0 462 310 91 30 chr3 121751215 121751447 -105773131 - MIR SINE MIR -2 260 15 2480 77 0 0 chr3 121753541 121753839 -105770739 - AluSq SINE Alu -15 298 1 689 200 127 6 chr3 121754809 121754974 -105769604 - MER5A DNA MER1_type -4 185 1 310 289 199 15 chr3 121756889 121757155 -105767423 - L2 LINE L2 -1086 2228 1914 188 307 27 13 chr3 121757492 121757567 -105767011 - L2 LINE L2 -3 3310 3235 337 304 116 17 chr3 121757865 121758046 -105766532 - MIR SINE MIR 0 262 64 246 351 36 30 chr3 121759667 121759832 -105764746 + L3b LINE CR1 1300 1465 -118 960 263 66 0 chr3 121763869 121764112 -105760466 - MIR SINE MIR -1 261 3 199 267 11 56 chr3 121764406 121764496 -105760082 - L2 LINE L2 -96 3217 3132 496 314 34 42 chr3 121764664 121764900 -105759678 + Charlie8 DNA MER1_type 2 235 -2182 1618 184 40 20 chr3 121766735 121767088 -105757490 + MER46B DNA MER2_type 1 235 -1 1042 32 0 0 chr3 121767133 121767256 -105757322 - AluY SINE Alu -14 297 175 2250 91 3 0 chr3 121767911 121768198 -105756380 - AluSx SINE Alu -24 288 1 201 294 69 29 chr3 121768301 121768403 -105756175 - L2 LINE L2 -13 3259 3154 592 256 89 35 chr3 121769129 121769332 -105755246 - MIR SINE MIR -29 233 20 270 95 0 0 chr3 121769347 121769389 -105755189 + (TG)n Simple_repeat Simple_repeat 2 43 0 715 185 0 8 chr3 121769389 121769519 -105755059 - FLAM_C SINE Alu -4 129 1 286 264 47 0 chr3 121769604 121769710 -105754868 + LTR33A LTR ERVL 60 170 -353 4211 72 11 0 chr3 121770555 121771110 -105753468 + L1PA7 LINE L1 5585 6145 -9 398 216 41 0 chr3 121771123 121771220 -105753358 + LTR33A LTR ERVL 66 166 -357 511 273 124 48 chr3 121771661 121772137 -105752441 + LTR33A LTR ERVL 12 523 0 984 304 187 20 chr3 121772138 121772690 -105751888 + L3 LINE CR1 358 1001 -576 1252 190 41 76 chr3 121772782 121773072 -105751506 + AluJo SINE Alu 1 280 -32 704 51 0 10 chr3 121773076 121773174 -105751404 + (TAGA)n Simple_repeat Simple_repeat 4 100 0 527 296 259 14 chr3 121773438 121773793 -105750785 + L3 LINE CR1 1126 1567 -10 21 57 0 0 chr3 121774378 121774413 -105750165 + AT_rich Low_complexity Low_complexity 1 35 0 588 266 106 18 chr3 121775338 121775564 -105749014 - MER46C DNA MER2_type -14 324 79 1385 154 0 17 chr3 121775829 121776069 -105748509 + MER46A DNA MER2_type 1 236 0 406 361 38 0 chr3 121776091 121776249 -105748329 - MIR SINE MIR -71 191 28 462 188 0 0 chr3 121777988 121778068 -105746510 + AluJ/FLAM SINE Alu 1 80 -232 252 0 0 0 chr3 121779286 121779314 -105745264 + (GA)n Simple_repeat Simple_repeat 2 29 0 657 245 29 69 chr3 121779810 121780055 -105744523 - MER46A DNA MER2_type -1 235 1 223 333 0 0 chr3 121780095 121780149 -105744429 + L2 LINE L2 3025 3078 -194 23 33 0 0 chr3 121780203 121780233 -105744345 + AT_rich Low_complexity Low_complexity 1 30 0 824 250 102 0 chr3 121781074 121781290 -105743288 - MIR SINE MIR 0 262 25 236 182 23 0 chr3 121781722 121781766 -105742812 + LTR33 LTR ERVL 477 521 0 971 190 73 100 chr3 121781775 121782181 -105742397 + MER39 LTR ERV1 6 403 -162 1776 133 73 57 chr3 121782181 121782550 -105742028 + THE1C LTR MaLR 1 375 0 971 190 73 100 chr3 121782550 121782708 -105741870 + MER39 LTR ERV1 403 564 -1 4750 127 70 20 chr3 121783281 121784150 -105740428 + MER49 LTR ERV1 1 913 -10 268 356 83 49 chr3 121784334 121784598 -105739980 + L2 LINE L2 3000 3272 0 200 128 26 0 chr3 121784838 121784877 -105739701 + (TA)n Simple_repeat Simple_repeat 2 41 0 261 341 8 56 chr3 121787451 121787577 -105737001 + MER5A DNA MER1_type 68 187 -2 693 292 97 0 chr3 121787760 121787986 -105736592 + MIR SINE MIR 15 262 0 355 295 57 0 chr3 121789191 121789296 -105735282 - L3 LINE CR1 -678 899 789 * 497 300 59 30 chr3 121789292 121789562 -105735016 + L3 LINE CR1 1240 1517 -60 2370 119 0 0 chr3 121789772 121790082 -105734496 - AluSx SINE Alu -2 310 1 23 33 0 0 chr3 121790082 121790112 -105734466 + AT_rich Low_complexity Low_complexity 1 30 0 404 296 40 45 chr3 121791050 121791123 -105733455 - MER5B DNA MER1_type -1 177 105 823 114 55 129 chr3 121791123 121791325 -105733253 - MER5A DNA MER1_type 0 189 3 404 296 40 45 chr3 121791325 121791427 -105733151 - MER5B DNA MER1_type -73 105 3 2347 71 0 0 chr3 121791766 121792073 -105732505 + AluSc SINE Alu 1 307 0 24 0 0 0 chr3 121793547 121793571 -105731007 + AT_rich Low_complexity Low_complexity 1 24 0 359 209 12 0 chr3 121794661 121794747 -105729831 + MER45A DNA AcHobo 58 144 -34 21 0 0 0 chr3 121794747 121794768 -105729810 + AT_rich Low_complexity Low_complexity 1 21 0 529 253 64 35 chr3 121794892 121795094 -105729484 + L2 LINE L2 3087 3294 -19 1671 100 153 0 chr3 121795934 121796183 -105728395 + AluSc SINE Alu 1 287 -12 2840 150 51 2 chr3 121796453 121797000 -105727578 - L1MA9 LINE L1 0 6312 5739 29 78 0 0 chr3 121797843 121797907 -105726671 + AT_rich Low_complexity Low_complexity 1 64 0 875 224 102 0 chr3 121798976 121799172 -105725406 + Tigger7 DNA MER2_type 1 216 -489 564 154 0 0 chr3 121799175 121799266 -105725312 + Tigger7 DNA MER2_type 2376 2466 -21 279 173 0 0 chr3 121800991 121801043 -105723535 + (CATATA)n Simple_repeat Simple_repeat 6 57 0 181 302 66 28 chr3 121802047 121802153 -105722425 + L3b LINE CR1 1359 1468 -115 200 250 0 0 chr3 121805995 121806047 -105718531 - MIR SINE MIR -13 249 198 * 475 301 30 45 chr3 121806038 121806237 -105718341 - L2 LINE L2 -1 3312 3117 9412 217 33 25 chr3 121806244 121809173 -105715405 + L1MB8 LINE L1 2569 5522 -662 651 149 0 0 chr3 121809199 121809293 -105715285 - AluSc SINE Alu -215 94 1 1252 170 173 11 chr3 121809293 121809657 -105714921 + L1MB8 LINE L1 5750 6172 -6 494 262 90 100 chr3 121809707 121810040 -105714538 - L2 LINE L2 -214 3099 2771 1625 269 125 34 chr3 121810057 121810108 -105714470 - L2 LINE L2 -1052 2262 2217 285 29 0 0 chr3 121810108 121810142 -105714436 + (TTTTA)n Simple_repeat Simple_repeat 1 34 0 1625 269 125 34 chr3 121810142 121810499 -105714079 - L2 LINE L2 -1097 2217 1894 1711 128 55 22 chr3 121810499 121810798 -105713780 + AluJb SINE Alu 1 308 0 1625 269 125 34 chr3 121810798 121811186 -105713392 - L2 LINE L2 -1420 1894 1391 27 0 0 0 chr3 121811750 121811777 -105712801 + AT_rich Low_complexity Low_complexity 1 27 0 1983 122 0 0 chr3 121813719 121813982 -105710596 + AluSg SINE Alu 1 263 -47 214 320 0 0 chr3 121814277 121814327 -105710251 - MIR3 SINE MIR -23 185 136 430 269 54 15 chr3 121814924 121815054 -105709524 + MIR3 SINE MIR 4 138 -70 25 0 0 0 chr3 121815309 121815334 -105709244 + AT_rich Low_complexity Low_complexity 1 25 0 225 0 0 0 chr3 121817626 121817651 -105706927 + (T)n Simple_repeat Simple_repeat 1 25 0 229 270 40 14 chr3 121818069 121818143 -105706435 - MIR3 SINE MIR -18 190 115 243 0 0 0 chr3 121819350 121819377 -105705201 + (TA)n Simple_repeat Simple_repeat 1 27 0 1405 101 44 35 chr3 121820755 121820881 -105703697 + MER30 DNA MER1_type 1 131 -99 2438 80 0 10 chr3 121820881 121821195 -105703383 + AluY SINE Alu 1 311 0 1405 101 44 35 chr3 121821195 121821296 -105703282 + MER30 DNA MER1_type 131 230 0 227 407 70 29 chr3 121822083 121822255 -105702323 - MIR3 SINE MIR -14 194 16 372 327 24 42 chr3 121823571 121823736 -105700842 + MIR SINE MIR 26 187 -75 247 291 126 46 chr3 121823848 121824023 -105700555 + MIR SINE MIR 29 217 -45 222 219 0 0 chr3 121825104 121825145 -105699433 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 250 259 17 0 chr3 121825681 121825739 -105698839 - MIR SINE MIR -154 108 50 213 227 30 30 chr3 121826770 121826836 -105697742 + GA-rich Low_complexity Low_complexity 5 70 0 26 0 0 0 chr3 121831913 121831939 -105692639 + AT_rich Low_complexity Low_complexity 1 26 0 29 70 0 0 chr3 121832877 121832934 -105691644 + AT_rich Low_complexity Low_complexity 1 57 0 236 330 55 0 chr3 121833469 121833578 -105691000 + MIR SINE MIR 145 259 -3 255 203 68 68 chr3 121834150 121834268 -105690310 - L1MC5 LINE L1 -36 7925 7808 22 0 0 0 chr3 121834380 121834402 -105690176 + AT_rich Low_complexity Low_complexity 1 22 0 195 262 0 0 chr3 121835773 121835815 -105688763 - L2 LINE L2 -4 3309 3268 21 0 0 0 chr3 121835983 121836004 -105688574 + AT_rich Low_complexity Low_complexity 1 21 0 2389 81 3 7 chr3 121837383 121837693 -105686885 - AluSc SINE Alu 0 309 1 1803 189 0 3 chr3 121838535 121838836 -105685742 + AluJo SINE Alu 1 300 -12 254 211 0 0 chr3 121840104 121840156 -105684422 + LTR30 LTR ERV1 1 52 -670 1042 153 6 11 chr3 121840156 121840339 -105684239 + LTR12 LTR ERV1 53 234 -480 334 121 0 0 chr3 121840393 121840451 -105684127 + LTR12 LTR ERV1 228 285 -429 325 214 11 0 chr3 121840452 121840541 -105684037 + LTR30 LTR ERV1 553 642 -80 536 146 42 0 chr3 121840544 121840640 -105683938 + LTR12 LTR ERV1 615 714 0 4408 179 41 29 chr3 121841143 121842044 -105682534 + L1MC2 LINE L1 5186 6100 -244 1897 144 16 7 chr3 121842044 121842349 -105682229 + AluSx SINE Alu 1 308 -4 4408 179 41 29 chr3 121842349 121842509 -105682069 + L1MC2 LINE L1 6100 6257 -87 1114 275 65 23 chr3 121892591 121893020 -105631558 - HERV16 LTR ERVL -4474 522 76 506 314 34 24 chr3 121893065 121893272 -105631306 - LTR16A LTR ERVL -5 445 237 660 210 79 47 chr3 121895557 121895771 -105628807 - MIR SINE MIR -20 242 22 4512 149 20 20 chr3 121897084 121897449 -105627129 - LTR39 LTR ERV1 0 783 419 2180 112 0 0 chr3 121897449 121897778 -105626800 + AluSx SINE Alu 1 287 -25 4512 149 20 20 chr3 121897778 121898195 -105626383 - LTR39 LTR ERV1 -363 420 1 1459 223 104 21 chr3 121898486 121898917 -105625661 + MLT1C LTR MaLR 1 467 0 321 274 156 15 chr3 121899648 121899783 -105624795 - MIR SINE MIR -64 198 45 2321 84 7 0 chr3 121900605 121900902 -105623676 + AluSp SINE Alu 3 301 -12 4468 101 45 18 chr3 121900906 121901483 -105623095 + Tigger3b DNA MER2_type 345 948 -2080 2300 109 0 0 chr3 121901483 121901786 -105622792 - AluSq SINE Alu -10 303 1 4468 101 45 18 chr3 121901786 121901950 -105622628 + Tigger3b DNA MER2_type 948 1106 -125 1460 256 57 40 chr3 121902825 121902956 -105621622 + L1ME3A LINE L1 5538 5665 -505 1702 164 102 15 chr3 121902956 121903298 -105621280 + MER93b LTR ERV1 1 372 -1 1460 256 57 40 chr3 121903298 121903759 -105620819 + L1ME3A LINE L1 5665 6140 -30 23 33 0 0 chr3 121903768 121903798 -105620780 + AT_rich Low_complexity Low_complexity 1 30 0 216 276 71 105 chr3 121903813 121904052 -105620526 - L2 LINE L2 -50 3222 2992 643 281 57 57 chr3 121905463 121905798 -105618780 + L1MEd LINE L1 12 346 -5773 1387 239 81 59 chr3 121905843 121906387 -105618191 + L1ME3A LINE L1 1 556 -5489 1913 213 65 21 chr3 121906509 121906781 -105617797 + L1ME3A LINE L1 570 828 -5351 1683 165 77 40 chr3 121906781 121907133 -105617445 - MLT1A1 LTR MaLR 0 365 1 1913 213 65 21 chr3 121907133 121907585 -105616993 + L1ME3A LINE L1 828 1328 -4851 1941 185 75 40 chr3 121907624 121907975 -105616603 - L1PB4 LINE L1 0 6156 5782 198 0 0 0 chr3 121907975 121907997 -105616581 + (TG)n Simple_repeat Simple_repeat 2 23 0 1941 185 75 40 chr3 121907997 121908125 -105616453 - L1PB4 LINE L1 -374 5782 5660 1743 238 100 44 chr3 121908169 121908836 -105615742 + L1ME3A LINE L1 1560 2188 -4557 2441 71 0 0 chr3 121908836 121909130 -105615448 + AluY SINE Alu 1 294 -17 1743 238 100 44 chr3 121909130 121909708 -105614870 + L1ME3A LINE L1 2188 2829 -3916 335 262 70 43 chr3 121909703 121909890 -105614688 + HAL1 LINE L1 2307 2498 -9 * 646 299 95 31 chr3 121909933 121910586 -105613992 + L1ME3A LINE L1 4284 4978 -1586 395 308 87 6 chr3 121910592 121910764 -105613814 + L1ME3A LINE L1 6182 6367 -221 630 236 55 12 chr3 121910849 121911014 -105613564 - MER5B DNA MER1_type 0 178 7 1654 153 76 55 chr3 121911090 121911457 -105613121 - THE1C LTR MaLR 0 375 1 215 122 0 24 chr3 121911571 121911612 -105612966 + (GGGA)n Simple_repeat Simple_repeat 1 40 0 23 0 0 0 chr3 121911967 121911990 -105612588 + AT_rich Low_complexity Low_complexity 1 23 0 2079 123 3 7 chr3 121912000 121912280 -105612298 + AluJb SINE Alu 5 285 -27 234 0 0 0 chr3 121912280 121912306 -105612272 + (CA)n Simple_repeat Simple_repeat 2 27 0 2079 123 3 7 chr3 121912306 121912327 -105612251 + AluJb SINE Alu 285 305 -7 2186 112 0 35 chr3 121912423 121912735 -105611843 - AluSx SINE Alu -7 305 5 255 291 120 70 chr3 121912741 121912899 -105611679 - MIR SINE MIR -50 212 47 2297 107 0 0 chr3 121912902 121913212 -105611366 - AluY SINE Alu -1 310 1 265 236 0 0 chr3 121914021 121914076 -105610502 + L2 LINE L2 3248 3302 -11 457 348 21 55 chr3 121914506 121914796 -105609782 + LTR67 LTR ERVL 121 400 -157 657 318 19 31 chr3 121915235 121915559 -105609019 - LTR16B LTR ERVL -12 452 133 1897 222 65 34 chr3 121917311 121917869 -105606709 + MLT1E2 LTR MaLR 52 626 0 282 56 0 0 chr3 121917923 121917959 -105606619 + (TG)n Simple_repeat Simple_repeat 2 37 0 19920 26 0 0 chr3 121918176 121920663 -105603915 - L1M LINE L1 -838 5308 2829 7069 12 0 0 chr3 121920663 121921499 -105603079 + L1HS LINE L1 5319 6154 -1 23 33 0 0 chr3 121922791 121922821 -105601757 + AT_rich Low_complexity Low_complexity 1 30 0 2174 87 42 0 chr3 121923205 121923491 -105601087 + AluSx SINE Alu 1 298 -14 221 310 136 27 chr3 121923505 121923689 -105600889 + MIR SINE MIR 59 262 0 21 0 0 0 chr3 121923716 121923737 -105600841 + AT_rich Low_complexity Low_complexity 1 21 0 301 309 36 22 chr3 121923972 121924111 -105600467 - MLT1L LTR MaLR -55 560 420 421 171 53 0 chr3 121925129 121925205 -105599373 - MER5A DNA MER1_type -29 160 81 486 215 0 32 chr3 121925285 121925378 -105599200 - MER5A DNA MER1_type -98 91 2 247 337 48 0 chr3 121926623 121926706 -105597872 - L3 LINE CR1 -103 1474 1388 205 298 71 132 chr3 121926730 121927206 -105597372 - L2 LINE L2 -1 3271 2825 435 253 62 0 chr3 121927265 121927411 -105597167 + Charlie7 DNA MER1_type 1 155 -2457 350 331 101 0 chr3 121927583 121927731 -105596847 + MER91A DNA MER1_type 6 168 -28 528 319 115 36 chr3 121927783 121928385 -105596193 - L2 LINE L2 -917 2397 1749 207 125 0 0 chr3 121930049 121930089 -105594489 + (TG)n Simple_repeat Simple_repeat 1 40 0 764 224 166 14 chr3 121930905 121931128 -105593450 - MIR SINE MIR -3 259 3 265 330 68 0 chr3 121931325 121931428 -105593150 - MIR SINE MIR -63 145 36 261 320 25 0 chr3 121931547 121931669 -105592909 + LTR16A1 LTR ERVL 1 125 -332 224 359 21 31 chr3 121932517 121932709 -105591869 + L2 LINE L2 2569 2758 -556 985 291 25 47 chr3 121932826 121933228 -105591350 - MER115 DNA AcHobo -293 400 8 238 318 0 0 chr3 121933239 121933305 -105591273 + L2 LINE L2 2791 2856 -458 663 301 35 25 chr3 121933422 121933704 -105590874 - MER102b DNA MER1_type -34 307 23 256 156 16 16 chr3 121934224 121934288 -105590290 - L1MC5 LINE L1 -415 7546 7483 * 5485 206 14 13 chr3 121934271 121935614 -105588964 - L1P LINE L1 -920 5226 3883 2408 211 73 20 chr3 121935606 121936259 -105588319 + L1P LINE L1 3202 3889 -2257 * 804 263 14 11 chr3 121936257 121936565 -105588013 - L1MC5 LINE L1 -946 6866 6555 * 884 201 20 61 chr3 121936660 121936954 -105587624 + L1MC5 LINE L1 7630 7911 -50 1413 155 14 18 chr3 121937045 121937348 -105587230 - MER61B LTR ERV1 -29 396 1 300 131 12 36 chr3 121937463 121937547 -105587031 + L1ME4a LINE L1 6039 6120 -1 309 289 34 122 chr3 121937941 121938204 -105586374 - MIR SINE MIR -13 249 10 748 210 79 47 chr3 121939967 121940181 -105584397 - MIR SINE MIR -20 242 22 4512 149 20 20 chr3 121941494 121941859 -105582719 - LTR39 LTR ERV1 0 783 419 2181 112 0 0 chr3 121941859 121942184 -105582394 + AluSx SINE Alu 1 312 0 4512 149 20 20 chr3 121942184 121942601 -105581977 - LTR39 LTR ERV1 -363 420 1 1433 225 104 21 chr3 121942892 121943323 -105581255 + MLT1C LTR MaLR 1 467 0 321 274 156 15 chr3 121944054 121944189 -105580389 - MIR SINE MIR -64 198 45 2562 23 3 13 chr3 121945010 121945337 -105579241 + AluY SINE Alu 2 311 0 807 203 146 0 chr3 121945342 121945534 -105579044 - MER58A DNA MER1_type 0 224 5 2500 46 0 3 chr3 121945609 121945914 -105578664 - AluY SINE Alu -7 304 1 2073 223 96 41 chr3 121945986 121946785 -105577793 + Zaphod DNA AcHobo 102 944 -3087 481 175 157 20 chr3 121946797 121947054 -105577524 + Zaphod DNA AcHobo 3595 3938 -93 1262 200 16 5 chr3 121947076 121947375 -105577203 + MER61B LTR ERV1 1 396 -29 865 240 48 35 chr3 121947559 121947872 -105576706 + MER46C DNA MER2_type 1 317 -21 356 221 0 107 chr3 121948937 121949086 -105575492 + L1ME1 LINE L1 5202 5334 -812 * 4625 200 21 26 chr3 121949083 121949697 -105574881 + L1MC3 LINE L1 6684 7291 -494 3838 78 8 10 chr3 121949697 121950209 -105574369 - MER9 LTR ERVK 0 511 1 4625 200 21 26 chr3 121950209 121950702 -105573876 + L1MC3 LINE L1 7291 7785 0 2614 234 71 20 chr3 121950698 121951490 -105573088 + L1ME1 LINE L1 5314 6145 -21 * 240 253 52 45 chr3 121951369 121951523 -105573055 + L1MA10 LINE L1 6180 6334 0 * 602 287 40 16 chr3 121952460 121952814 -105571764 - L1ME4a LINE L1 -216 5905 5531 477 270 113 13 chr3 121953022 121953181 -105571397 - MIR SINE MIR 0 262 88 1597 89 45 18 chr3 121954664 121954888 -105569690 + MER30 DNA MER1_type 1 230 0 25 0 0 0 chr3 121955103 121955128 -105569450 + AT_rich Low_complexity Low_complexity 1 25 0 378 203 258 37 chr3 121956319 121956482 -105568096 + MIR3 SINE MIR 3 201 -7 2418 159 26 12 chr3 121956608 121957030 -105567548 - MSTA LTR MaLR 0 428 1 2836 161 68 33 chr3 121957168 121957909 -105566669 - LTR1B LTR ERV1 0 785 1 667 330 108 31 chr3 121958001 121958781 -105565797 + L2 LINE L2 2367 3268 -4 837 256 58 12 chr3 121959047 121959289 -105565289 + MIR SINE MIR 10 262 0 197 119 24 0 chr3 121960507 121960549 -105564029 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 28 29 0 0 chr3 121961075 121961110 -105563468 + AT_rich Low_complexity Low_complexity 1 35 0 846 321 64 39 chr3 121961338 121962118 -105562460 + L2 LINE L2 2507 3309 -4 292 335 95 19 chr3 121962175 121962333 -105562245 + L2 LINE L2 3099 3268 -4 222 346 13 13 chr3 121962558 121962636 -105561942 - MIR SINE MIR -81 127 50 340 376 99 16 chr3 121963197 121963439 -105561139 - L2 LINE L2 -2 3270 3009 1024 257 26 122 chr3 121963532 121964207 -105560371 - L2 LINE L2 0 3313 2717 2340 107 0 0 chr3 121964207 121964507 -105560071 - AluSq SINE Alu -13 300 1 1024 257 26 122 chr3 121964507 121964552 -105560026 - L2 LINE L2 -596 2717 2669 589 344 86 0 chr3 121964535 121964756 -105559822 - MIR SINE MIR -8 254 15 * 608 284 101 0 chr3 121964817 121965025 -105559553 - MIR SINE MIR 0 262 34 333 308 125 20 chr3 121965070 121965671 -105558907 - L1MEc LINE L1 -4037 2359 1696 688 299 53 43 chr3 121965811 121966691 -105557887 - L1MEc LINE L1 -4723 1673 785 207 130 0 43 chr3 121966692 121966738 -105557840 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 24 0 0 0 chr3 121967480 121967504 -105557074 + AT_rich Low_complexity Low_complexity 1 24 0 1066 76 0 0 chr3 121967504 121967636 -105556942 - AluY SINE Alu -179 132 1 696 295 66 21 chr3 121968993 121969234 -105555344 - MIR SINE MIR -6 256 5 284 295 147 6 chr3 121969489 121969645 -105554933 + MIR SINE MIR 59 236 -26 829 56 0 0 chr3 121969891 121969999 -105554579 - L1PA5 LINE L1 -356 5798 5691 3025 33 14 0 chr3 121969999 121970356 -105554222 + L1PA5 LINE L1 5785 6154 0 324 0 0 0 chr3 121970989 121971025 -105553553 + (TG)n Simple_repeat Simple_repeat 1 36 0 455 311 112 29 chr3 121971030 121971236 -105553342 - MIR SINE MIR -22 240 18 193 306 200 0 chr3 121973329 121973414 -105551164 - MIR SINE MIR 0 262 161 770 246 4 102 chr3 121973417 121973681 -105550897 - MIR SINE MIR 0 262 25 372 279 134 23 chr3 121974343 121974515 -105550063 + MIR SINE MIR 1 191 -71 228 361 0 0 chr3 121974606 121974689 -105549889 + MIR3 SINE MIR 102 184 -24 445 231 60 0 chr3 121974718 121974835 -105549743 - MIR SINE MIR -44 218 95 210 143 0 0 chr3 121975606 121975641 -105548937 + (T)n Simple_repeat Simple_repeat 1 35 0 2274 171 58 5 chr3 121976113 121976547 -105548031 - LTR32 LTR ERVL 0 471 15 204 216 0 0 chr3 121977087 121977124 -105547454 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 230 302 58 23 chr3 121977144 121977230 -105547348 - L2 LINE L2 -59 3213 3125 862 186 5 42 chr3 121977420 121977613 -105546965 + MER5A DNA MER1_type 1 186 -3 352 248 197 8 chr3 121977613 121977730 -105546848 - MER5A DNA MER1_type -32 157 19 216 67 0 0 chr3 121977930 121977960 -105546618 + (TG)n Simple_repeat Simple_repeat 1 30 0 288 0 0 0 chr3 121978340 121978372 -105546206 + (TG)n Simple_repeat Simple_repeat 2 33 0 300 169 91 0 chr3 121978762 121978839 -105545739 + MLT2B1 LTR ERVL 3 86 -434 1117 184 43 32 chr3 121978853 121979135 -105545443 - THE1C LTR MaLR -90 285 1 1368 203 106 41 chr3 121979135 121979549 -105545029 + MLT2B1 LTR ERVL 80 520 0 513 330 49 22 chr3 121979644 121979911 -105544667 - MLT1J LTR MaLR 0 511 238 1918 84 4 7 chr3 121980565 121980838 -105543740 + MER1A DNA MER1_type 258 529 0 196 253 0 67 chr3 121982251 121982326 -105542252 + L2 LINE L2 1901 1970 -1344 2504 132 54 98 chr3 121982597 121983136 -105541442 + MLT2B2 LTR ERVL 1 515 0 266 241 63 38 chr3 121983587 121983666 -105540912 + MIR SINE MIR 23 103 -105 309 100 0 0 chr3 121983827 121983877 -105540701 + (GA)n Simple_repeat Simple_repeat 1 50 0 1355 174 148 16 chr3 121983910 121984220 -105540358 - MLT2D LTR ERVL -60 354 4 248 287 295 0 chr3 121984231 121984353 -105540225 - MER5A DNA MER1_type -28 161 4 374 254 108 31 chr3 121984392 121984522 -105540056 - MIR3 SINE MIR -67 141 2 554 293 115 13 chr3 121984605 121985073 -105539505 + L1ME LINE L1 4623 5138 -1008 531 302 94 0 chr3 121985074 121985276 -105539302 - MIR SINE MIR -8 254 34 368 272 133 11 chr3 121985340 121985520 -105539058 + L1ME LINE L1 5193 5394 -752 322 275 0 0 chr3 121985535 121985615 -105538963 + L1ME LINE L1 5550 5629 -541 573 180 18 0 chr3 121985949 121986060 -105538518 - LTR32 LTR ERVL 0 471 359 2068 150 48 3 chr3 121986186 121986539 -105538039 - LTR32 LTR ERVL -82 389 21 2721 106 13 54 chr3 121987309 121987773 -105536805 + MER65A LTR ERV1 1 445 0 232 250 173 19 chr3 121987777 121987881 -105536697 - MIR SINE MIR -50 212 93 509 246 126 0 chr3 121987888 121988079 -105536499 + LTR37B LTR ERV1 1 215 -253 183 80 0 0 chr3 121988124 121988149 -105536429 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 252 324 28 0 chr3 121988285 121988356 -105536222 - MIR SINE MIR -170 92 20 207 268 0 0 chr3 121990088 121990129 -105534449 + polypurine Low_complexity Low_complexity 3 43 0 1457 193 80 46 chr3 121991578 121991992 -105532586 - MSTC LTR MaLR 0 428 1 285 322 91 8 chr3 121992679 121992800 -105531778 - MIR SINE MIR -109 153 23 773 302 17 14 chr3 121992818 121993100 -105531478 + MLT1G1 LTR MaLR 1 322 -273 213 211 0 0 chr3 121993105 121993143 -105531435 + GA-rich Low_complexity Low_complexity 2 39 0 313 250 60 26 chr3 121993233 121993349 -105531229 + MLT1G1 LTR MaLR 387 506 -36 1018 276 4 14 chr3 121993368 121993643 -105530935 - HERV16 LTR ERVL -1967 3029 2758 238 105 35 35 chr3 121993797 121993854 -105530724 - MER21B LTR ERV1 -1 862 806 * 3099 210 31 8 chr3 121993850 121994494 -105530084 - MER21B LTR ERV1 -186 677 19 250 313 0 12 chr3 121994516 121994596 -105529982 - MER21B LTR ERV1 -773 90 12 933 297 44 23 chr3 121994601 121995054 -105529524 - HERV16 LTR ERVL -2470 2526 2064 306 87 0 0 chr3 121995093 121995139 -105529439 + (TG)n Simple_repeat Simple_repeat 2 47 0 837 264 24 16 chr3 121995182 121995428 -105529150 - HERV16 LTR ERVL -3058 1938 1691 936 307 61 20 chr3 121995465 121996238 -105528340 - HERV16 LTR ERVL -3423 1573 697 719 287 55 30 chr3 121996384 121996712 -105527866 - HERV16 LTR ERVL -4070 926 591 986 273 65 23 chr3 121996749 121997178 -105527400 - HERV16 LTR ERVL -4474 522 76 545 321 34 30 chr3 121997224 121997461 -105527117 - LTR16A LTR ERVL -5 445 208 312 322 9 61 chr3 121998048 121998176 -105526402 + MIR SINE MIR 32 151 -67 453 274 10 55 chr3 121998723 121998928 -105525650 - MIR SINE MIR -41 221 31 264 59 0 0 chr3 121999149 121999183 -105525395 + (TG)n Simple_repeat Simple_repeat 2 35 0 190 250 36 18 chr3 122000415 122000471 -105524107 - MIR SINE MIR -70 138 82 378 211 0 0 chr3 122000486 122000557 -105524021 - MER45 DNA AcHobo -1 1580 1510 804 189 13 7 chr3 122000559 122000751 -105523827 - FRAM SINE Alu 0 194 2 426 217 22 0 chr3 122000753 122000845 -105523733 - MER45 DNA AcHobo -59 119 26 598 223 340 6 chr3 122000908 122001240 -105523338 + LTR33 LTR ERVL 7 449 -72 595 189 139 80 chr3 122001509 122001710 -105522868 - MER58C DNA MER1_type -1 214 2 231 263 34 5 chr3 122003022 122003145 -105521433 - MER5A DNA MER1_type 0 189 9 484 263 10 102 chr3 122005095 122005300 -105519278 - MIR SINE MIR 0 262 77 977 114 0 0 chr3 122005302 122005433 -105519145 + AluJb SINE Alu 163 293 -19 251 353 144 35 chr3 122005549 122006028 -105518550 - L2 LINE L2 -583 2731 2201 301 203 25 13 chr3 122006103 122006182 -105518396 + MER116 DNA Mariner 1 80 0 360 285 145 47 chr3 122007349 122007584 -105516994 + LTR40b LTR ERVL 124 381 -81 240 233 0 0 chr3 122007584 122007657 -105516921 + (TA)n Simple_repeat Simple_repeat 2 74 0 390 154 0 15 chr3 122007900 122007965 -105516613 + LTR40a LTR ERVL 451 514 -5 640 155 86 0 chr3 122008849 122008965 -105515613 - FLAM_C SINE Alu -6 127 2 409 295 154 0 chr3 122010375 122010531 -105514047 - MER91A DNA MER1_type -1 195 16 582 296 66 9 chr3 122011586 122011812 -105512766 + MIR SINE MIR 13 251 -11 297 169 156 39 chr3 122013596 122013673 -105510905 - L2 LINE L2 0 3313 3228 354 266 119 9 chr3 122014028 122014137 -105510441 + Charlie8 DNA MER1_type 7 127 -2290 225 125 21 21 chr3 122014954 122015002 -105509576 + (TG)n Simple_repeat Simple_repeat 1 48 0 344 242 169 28 chr3 122015211 122015571 -105509007 - L1ME4a LINE L1 0 6121 5711 440 149 0 27 chr3 122015578 122015652 -105508926 + AluJ/FRAM SINE Alu 224 295 -17 466 299 34 6 chr3 122015666 122015843 -105508735 - L1ME4a LINE L1 -420 5701 5520 32 26 0 0 chr3 122017056 122017095 -105507483 + AT_rich Low_complexity Low_complexity 1 39 0 913 169 100 0 chr3 122017095 122017255 -105507323 - MER21B LTR ERV1 -360 503 328 303 293 0 0 chr3 122017872 122017954 -105506624 + L1MC4 LINE L1 6614 6695 -1347 744 163 118 127 chr3 122018783 122019114 -105505464 - LTR37A LTR ERV1 -28 398 71 246 300 18 18 chr3 122020464 122020574 -105504004 + MIR3 SINE MIR 81 190 -18 517 275 20 0 chr3 122020699 122020848 -105503730 + L2 LINE L2 3161 3312 -1 204 275 38 12 chr3 122021326 122021406 -105503172 + MER91A DNA MER1_type 33 114 -82 197 303 13 0 chr3 122023599 122023675 -105500903 - MIR SINE MIR -119 143 67 350 289 53 0 chr3 122024328 122024442 -105500136 - MIR SINE MIR -15 247 128 271 351 18 0 chr3 122024448 122024562 -105500016 - MER5B DNA MER1_type -3 175 60 683 267 6 6 chr3 122024566 122024742 -105499836 - MER5B DNA MER1_type -2 176 1 2225 100 13 3 chr3 122025255 122025555 -105499023 + AluSc SINE Alu 1 303 -6 596 62 25 0 chr3 122026397 122026478 -105498100 - L1PA7 LINE L1 -1 6153 6071 1402 220 84 41 chr3 122026616 122027080 -105497498 + L2 LINE L2 2417 2900 -414 2852 180 56 4 chr3 122028943 122029477 -105495101 - MER68 LTR ERV1 0 562 1 505 279 85 26 chr3 122029546 122029806 -105494772 - L1MC4a LINE L1 -512 5822 5576 2110 161 0 0 chr3 122029828 122030139 -105494439 + AluSx SINE Alu 1 311 -1 237 286 79 17 chr3 122030183 122030361 -105494217 - L2 LINE L2 -672 2642 2454 193 319 0 14 chr3 122030390 122030462 -105494116 - L2 LINE L2 -663 2651 2581 * 204 320 52 20 chr3 122030459 122030612 -105493966 + L2 LINE L2 2464 2621 -693 5006 149 6 15 chr3 122031568 122031932 -105492646 + L1MB3 LINE L1 5347 5713 -470 4057 161 21 48 chr3 122031932 122032504 -105492074 - LTR39 LTR ERV1 0 783 238 2529 50 3 3 chr3 122032504 122032806 -105491772 + AluY SINE Alu 1 302 -9 4057 161 21 48 chr3 122032806 122033038 -105491540 - LTR39 LTR ERV1 -545 238 1 5006 149 6 15 chr3 122033038 122033516 -105491062 + L1MB3 LINE L1 5713 6181 -2 285 228 13 38 chr3 122033891 122033970 -105490608 - LTR33A LTR ERVL 0 523 447 345 224 165 8 chr3 122034618 122034744 -105489834 - MIR SINE MIR -65 143 36 950 193 128 5 chr3 122035078 122035296 -105489282 - MLT1D LTR MaLR 0 505 261 256 298 24 0 chr3 122035371 122035455 -105489123 - MLT1D LTR MaLR -415 90 5 1881 171 3 3 chr3 122036467 122036766 -105487812 + AluJb SINE Alu 1 299 -13 27 0 0 0 chr3 122036766 122036793 -105487785 + AT_rich Low_complexity Low_complexity 1 27 0 1314 150 12 20 chr3 122036892 122037138 -105487440 + LTR1 LTR ERV1 9 252 -533 * 3235 149 19 34 chr3 122037135 122037724 -105486854 + LTR1 LTR ERV1 206 785 0 252 269 82 67 chr3 122037724 122037862 -105486716 - MIR SINE MIR -62 146 15 239 229 0 0 chr3 122037981 122038029 -105486549 + MIR SINE MIR 58 105 -157 2558 65 0 0 chr3 122038039 122038347 -105486231 - AluY SINE Alu -1 310 3 413 214 36 18 chr3 122038347 122038459 -105486119 + MIR SINE MIR 87 200 -62 1734 194 0 0 chr3 122038462 122038751 -105485827 + AluJb SINE Alu 1 289 -23 21 0 0 0 chr3 122038751 122038772 -105485806 + AT_rich Low_complexity Low_complexity 1 21 0 204 208 0 21 chr3 122038779 122038827 -105485751 + GA-rich Low_complexity Low_complexity 2 48 0 2070 132 0 43 chr3 122040202 122040528 -105484050 - AluSx SINE Alu 0 312 1 465 168 0 31 chr3 122040549 122040656 -105483922 - MER5A DNA MER1_type -83 106 4 275 0 29 0 chr3 122040723 122040758 -105483820 + (TG)n Simple_repeat Simple_repeat 1 36 0 194 302 0 0 chr3 122043022 122043075 -105481503 - L2 LINE L2 -15 3257 3205 4500 64 3 2 chr3 122043816 122044381 -105480197 - L1PA8 LINE L1 -1 6171 5606 315 287 27 18 chr3 122044504 122044650 -105479928 + MIR SINE MIR 17 164 -44 187 103 51 0 chr3 122045193 122045232 -105479346 + GA-rich Low_complexity Low_complexity 3 43 0 262 188 75 38 chr3 122045946 122046026 -105478552 - MIR SINE MIR -70 192 110 375 132 221 0 chr3 122046998 122047066 -105477512 - MER45A DNA AcHobo -12 166 84 2246 104 17 0 chr3 122047144 122047442 -105477136 - AluSx SINE Alu -9 303 1 233 184 0 0 chr3 122047895 122047933 -105476645 + AluJo SINE Alu 1 38 -262 886 261 64 66 chr3 122047951 122048481 -105476097 + LTR38 LTR ERV1 59 606 -5 1459 123 7 110 chr3 122048484 122048792 -105475786 + AluJo SINE Alu 27 302 -10 483 213 27 87 chr3 122048989 122049172 -105475406 + MIR SINE MIR 26 197 -65 194 411 28 21 chr3 122049299 122049440 -105475138 + L2 LINE L2 2914 3055 -217 342 273 9 73 chr3 122049851 122049961 -105474617 - L2 LINE L2 -14 3258 3156 2552 52 0 10 chr3 122050049 122050377 -105474201 + AluY SINE Alu 1 303 -8 791 224 146 0 chr3 122050382 122050574 -105474004 - MER58A DNA MER1_type 0 224 5 2488 52 0 3 chr3 122050649 122050954 -105473624 - AluY SINE Alu -7 304 1 2347 223 96 42 chr3 122051026 122051826 -105472752 + Zaphod DNA AcHobo 102 944 -3087 615 168 348 11 chr3 122051838 122052117 -105472461 + Zaphod DNA AcHobo 536 650 -43 1346 205 17 6 chr3 122052117 122052418 -105472160 + MER61B LTR ERV1 1 396 -28 965 243 48 35 chr3 122052602 122052915 -105471663 + MER46C DNA MER2_type 1 317 -21 416 221 0 107 chr3 122053980 122054129 -105470449 + L1ME1 LINE L1 5202 5334 -812 * 5089 203 18 24 chr3 122054126 122054740 -105469838 + L1MC3 LINE L1 6684 7291 -494 4103 78 8 10 chr3 122054740 122055252 -105469326 - MER9 LTR ERVK 0 511 1 5089 203 18 24 chr3 122055252 122055745 -105468833 + L1MC3 LINE L1 7291 7785 0 2972 234 70 24 chr3 122055719 122056566 -105468012 + L1ME1 LINE L1 5295 6334 0 * 222 185 62 111 chr3 122057962 122058043 -105466535 - MIR SINE MIR -111 151 75 277 280 133 35 chr3 122058332 122058475 -105466103 - MIR3 SINE MIR -32 176 20 207 0 0 0 chr3 122058578 122058601 -105465977 + (A)n Simple_repeat Simple_repeat 1 23 0 5483 98 4 5 chr3 122059105 122059883 -105464695 + L1PB1 LINE L1 5374 6150 -1 522 225 28 28 chr3 122059986 122060128 -105464450 - L2 LINE L2 -14 3299 3158 494 290 7 26 chr3 122060183 122060338 -105464240 - MIR SINE MIR -100 162 11 2364 162 3 16 chr3 122060343 122060713 -105463865 + MLT1A1 LTR MaLR 1 365 0 281 365 14 21 chr3 122060820 122060965 -105463613 - L2 LINE L2 -182 3090 2947 310 333 80 27 chr3 122060999 122061149 -105463429 - L2 LINE L2 -457 2857 2700 2102 116 3 3 chr3 122061149 122061441 -105463137 - AluSx SINE Alu -20 292 1 198 290 30 60 chr3 122061730 122061830 -105462748 - L2 LINE L2 -8 3305 3209 267 227 0 0 chr3 122062475 122062541 -105462037 + (TA)n Simple_repeat Simple_repeat 2 67 0 474 302 43 79 chr3 122063729 122064170 -105460408 + MER65A LTR ERV1 1 425 -20 1003 185 14 24 chr3 122065287 122065498 -105459080 - MER3 DNA MER1_type 0 209 1 481 300 139 0 chr3 122065758 122065938 -105458640 + MIR SINE MIR 45 249 -13 214 244 0 0 chr3 122066015 122066056 -105458522 + L2 LINE L2 3265 3305 -8 208 169 17 17 chr3 122066093 122066152 -105458426 + CT-rich Low_complexity Low_complexity 1 59 0 906 173 0 0 chr3 122066152 122066302 -105458276 - FRAM SINE Alu -1 175 26 1418 141 54 8 chr3 122066307 122066548 -105458030 + MER50 LTR ERV1 7 258 -476 555 138 0 0 chr3 122066542 122066622 -105457956 - MER50 LTR ERV1 -407 327 248 * 437 241 36 62 chr3 122066670 122066782 -105457796 - AluJo SINE Alu -122 190 82 3155 87 11 54 chr3 122067349 122067809 -105456769 + MLT2A1 LTR ERVL 5 444 0 252 313 72 0 chr3 122068266 122068349 -105456229 - MER5B DNA MER1_type -82 96 8 1509 124 108 27 chr3 122068615 122068874 -105455704 - Tigger3(Golem) DNA MER2_type -2749 280 1 1873 100 0 27 chr3 122069104 122069407 -105455171 + AluSx SINE Alu 30 325 0 953 288 47 68 chr3 122069937 122070485 -105454093 - MER34 LTR ERV1 -5 537 1 222 352 11 44 chr3 122071375 122071466 -105453112 + MIR SINE MIR 37 124 -84 3715 165 6 15 chr3 122071605 122072254 -105452324 + L1MB8 LINE L1 5479 6121 -57 270 329 49 21 chr3 122072670 122072813 -105451765 + LTR68 LTR ERV1 291 437 -303 28 29 0 0 chr3 122073084 122073119 -105451459 + AT_rich Low_complexity Low_complexity 1 35 0 983 268 82 68 chr3 122073314 122073899 -105450679 + MLT1G1 LTR MaLR 3 595 0 399 305 12 24 chr3 122074968 122074985 -105449593 - L1MA10 LINE L1 -1 6333 6317 2778 198 12 0 chr3 122074985 122075501 -105449077 - L1ME1 LINE L1 -6 6160 5639 226 162 0 0 chr3 122075522 122075559 -105449019 + L1ME LINE L1 5634 5670 -492 506 25 37 12 chr3 122075645 122075726 -105448852 + (TCTA)n Simple_repeat Simple_repeat 3 85 0 878 134 0 8 chr3 122075741 122075860 -105448718 - FLAM_C SINE Alu -15 118 1 347 275 14 28 chr3 122076159 122076301 -105448277 + L1MC4 LINE L1 7902 8041 -1 * 1731 254 69 31 chr3 122076296 122076950 -105447628 + L1MC4 LINE L1 7225 7903 -139 2285 99 0 3 chr3 122077340 122077632 -105446946 + AluSg SINE Alu 1 291 -19 406 59 0 0 chr3 122077647 122077698 -105446880 + Ricksha DNA DNA 304 354 -1692 317 230 11 46 chr3 122077699 122077786 -105446792 + MLT2B3 LTR ERVL 12 95 -459 4700 64 3 2 chr3 122078335 122078900 -105445678 - L1PA8 LINE L1 -1 6171 5606 355 311 22 15 chr3 122079028 122079163 -105445415 + MIR SINE MIR 20 155 -107 187 103 51 0 chr3 122079712 122079751 -105444827 + GA-rich Low_complexity Low_complexity 3 43 0 286 188 75 38 chr3 122080465 122080545 -105444033 - MIR SINE MIR -70 192 110 376 132 221 0 chr3 122081517 122081585 -105442993 - MER45A DNA AcHobo -12 166 84 2228 104 17 0 chr3 122081663 122081961 -105442617 - AluSx SINE Alu -9 303 1 231 184 0 0 chr3 122082416 122082454 -105442124 + AluJo SINE Alu 1 38 -263 887 261 64 66 chr3 122082472 122083002 -105441576 + LTR38 LTR ERV1 59 606 -5 1479 120 7 110 chr3 122083005 122083313 -105441265 + AluJo SINE Alu 27 302 -10 539 213 27 87 chr3 122083510 122083693 -105440885 + MIR SINE MIR 26 197 -65 342 273 9 73 chr3 122084372 122084482 -105440096 - L2 LINE L2 -14 3258 3156 2495 73 0 0 chr3 122084570 122084871 -105439707 + AluY SINE Alu 1 301 -10 216 291 66 56 chr3 122085672 122085885 -105438693 + L2 LINE L2 2553 2767 -547 202 263 53 13 chr3 122086185 122086261 -105438317 + L2 LINE L2 2943 3021 -251 1163 242 126 19 chr3 122086587 122087009 -105437569 - MLT1C LTR MaLR 0 467 1 327 333 0 0 chr3 122088441 122088531 -105436047 - L2 LINE L2 0 3313 3224 260 114 200 0 chr3 122088721 122088791 -105435787 + MER91C DNA MER1_type 22 105 -35 234 69 0 0 chr3 122089432 122089461 -105435117 + LTR35 LTR ERV1 1 29 -589 3509 155 90 20 chr3 122089462 122090126 -105434452 - MER50 LTR ERV1 -23 711 1 2426 144 48 15 chr3 122090126 122090641 -105433937 + LTR35 LTR ERV1 26 618 0 1897 172 112 31 chr3 122091084 122091503 -105433075 + MLT1D LTR MaLR 1 453 -52 10980 48 12 18 chr3 122093019 122094426 -105430152 - SVA Other Other 0 1386 1 600 269 33 6 chr3 122094515 122094697 -105429881 - MER112 DNA MER1_type -8 252 66 5732 128 20 52 chr3 122094797 122095350 -105429228 + L1MA5 LINE L1 5297 5803 -497 2327 82 3 0 chr3 122095350 122095641 -105428937 + AluSp SINE Alu 5 296 -17 5732 128 20 52 chr3 122095641 122096124 -105428454 + L1MA5 LINE L1 5803 6300 0 740 245 105 85 chr3 122096998 122097713 -105426865 + L1MC5 LINE L1 7198 7926 -35 1360 203 0 21 chr3 122097866 122098152 -105426426 + AluJo SINE Alu 3 282 -30 180 0 0 0 chr3 122098155 122098175 -105426403 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 256 329 94 20 chr3 122098720 122098964 -105425614 + MIR SINE MIR 2 262 0 1581 194 72 36 chr3 122099110 122099471 -105425107 - MLT1A2 LTR MaLR 0 374 1 2360 102 0 3 chr3 122099755 122100060 -105424518 - AluSx SINE Alu -8 304 1 251 233 17 17 chr3 122100558 122100618 -105423960 + MIR SINE MIR 90 149 -59 758 244 140 58 chr3 122100948 122101313 -105423265 - Charlie8 DNA MER1_type -1927 490 96 310 337 76 16 chr3 122101776 122101960 -105422618 - MIR3 SINE MIR -10 198 4 283 278 65 107 chr3 122102574 122102654 -105421924 - MIR SINE MIR -10 252 181 1737 158 3 36 chr3 122102654 122102957 -105421621 + AluJb SINE Alu 1 293 -19 283 278 65 107 chr3 122102957 122103045 -105421533 - MIR SINE MIR -81 181 91 294 230 95 14 chr3 122103064 122103138 -105421440 + L2 LINE L2 3174 3253 -19 412 254 186 41 chr3 122105790 122106010 -105418568 - MIR SINE MIR -3 259 8 2406 97 0 0 chr3 122107305 122107615 -105416963 + AluSq SINE Alu 1 310 -3 21 0 0 0 chr3 122108484 122108505 -105416073 + AT_rich Low_complexity Low_complexity 1 21 0 1684 166 7 0 chr3 122108505 122108776 -105415802 - AluJb SINE Alu -24 288 16 643 301 89 50 chr3 122109846 122110371 -105414207 + MLT1K LTR MaLR 41 586 -2 341 260 55 39 chr3 122110414 122110541 -105414037 - MIR SINE MIR -63 145 17 22 35 0 0 chr3 122110704 122110733 -105413845 + AT_rich Low_complexity Low_complexity 1 29 0 219 114 0 0 chr3 122111902 122111937 -105412641 + (A)n Simple_repeat Simple_repeat 1 35 0 240 226 0 0 chr3 122112960 122113022 -105411556 + (TA)n Simple_repeat Simple_repeat 2 63 0 2702 42 0 0 chr3 122115834 122116145 -105408433 - AluY SINE Alu 0 311 1 462 49 0 0 chr3 122116556 122116617 -105407961 + (TC)n Simple_repeat Simple_repeat 2 62 0 2210 121 0 0 chr3 122117580 122117877 -105406701 - AluSc SINE Alu -12 297 1 33 25 0 0 chr3 122118067 122118107 -105406471 + AT_rich Low_complexity Low_complexity 1 40 0 23 68 0 0 chr3 122119435 122119479 -105405099 + AT_rich Low_complexity Low_complexity 1 44 0 1780 141 3 52 chr3 122120134 122120461 -105404117 + AluJb SINE Alu 1 311 -1 883 145 0 0 chr3 122121563 122121694 -105402884 + FLAM_A SINE Alu 1 131 -2 22 35 0 0 chr3 122122659 122122688 -105401890 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr3 122124084 122124118 -105400460 + AT_rich Low_complexity Low_complexity 1 34 0 909 195 57 16 chr3 122125402 122125641 -105398937 + L1MC/D LINE L1 5456 5695 -495 309 146 0 0 chr3 122125641 122125696 -105398882 + L1MC1 LINE L1 6269 6323 -10 1028 227 82 96 chr3 122127626 122128138 -105396440 + MLT1D LTR MaLR 1 505 0 574 249 60 60 chr3 122128584 122128785 -105395793 - MER20 DNA MER1_type -18 201 1 26 0 0 0 chr3 122128978 122129004 -105395574 + AT_rich Low_complexity Low_complexity 1 26 0 2102 105 3 50 chr3 122130088 122130411 -105394167 - AluSg SINE Alu 0 310 3 447 162 0 0 chr3 122130719 122130793 -105393785 + Tigger4(Zombi) DNA MER2_type 2658 2731 0 239 237 0 17 chr3 122131507 122131566 -105393012 - L2 LINE L2 0 3272 3215 329 248 72 64 chr3 122131592 122131717 -105392861 - L2 LINE L2 -5 3308 3183 24 77 0 0 chr3 122132376 122132428 -105392150 + AT_rich Low_complexity Low_complexity 1 52 0 2386 93 0 3 chr3 122132991 122133302 -105391276 + AluSg SINE Alu 1 310 0 5027 171 45 25 chr3 122133768 122134826 -105389752 + Tigger6a DNA MER2_type 4 1083 0 198 401 45 38 chr3 122135775 122135907 -105388671 + L2 LINE L2 3139 3271 -1 660 278 24 28 chr3 122136053 122136265 -105388313 + MIR SINE MIR 52 262 0 292 291 112 27 chr3 122136438 122136644 -105387934 + L1ME4a LINE L1 5374 5604 -517 382 244 141 52 chr3 122136676 122137058 -105387520 + L1ME4a LINE L1 5704 6119 -2 648 297 20 32 chr3 122138905 122139154 -105385424 + MIR SINE MIR 3 248 -14 273 221 81 23 chr3 122140305 122140391 -105384187 - MIR SINE MIR -62 200 110 749 233 28 6 chr3 122140459 122140639 -105383939 + L2 LINE L2 2368 2551 -763 34 42 0 0 chr3 122140712 122140760 -105383818 + AT_rich Low_complexity Low_complexity 1 48 0 303 274 42 0 chr3 122140803 122140898 -105383680 - L2 LINE L2 -1 3312 3214 535 293 158 15 chr3 122141021 122141287 -105383291 - L2 LINE L2 -401 2913 2610 372 358 119 12 chr3 122141303 122141702 -105382876 + L3 LINE CR1 1052 1569 -8 2245 120 0 0 chr3 122141773 122142074 -105382504 - AluSx SINE Alu -11 301 1 260 175 16 32 chr3 122142988 122143051 -105381527 + MLT2C1 LTR ERVL 1 62 -335 2564 194 92 99 chr3 122143052 122143701 -105380877 + MLT1E3 LTR MaLR 10 624 0 345 267 209 24 chr3 122143953 122144163 -105380415 + MIR SINE MIR 6 254 -8 391 272 0 0 chr3 122144217 122144298 -105380280 + L2 LINE L2 3186 3266 -6 228 330 89 39 chr3 122144306 122144485 -105380093 - MIR SINE MIR -71 191 4 3081 192 59 21 chr3 122144834 122145628 -105378950 + L1MD2 LINE L1 5461 6337 -22 362 273 47 39 chr3 122146349 122146477 -105378101 - MIR SINE MIR -98 164 36 243 0 0 0 chr3 122147029 122147056 -105377522 + (A)n Simple_repeat Simple_repeat 1 27 0 232 333 94 0 chr3 122149034 122149130 -105375448 + MIR SINE MIR 40 144 -118 832 222 42 37 chr3 122149615 122150073 -105374505 + LTR37A LTR ERV1 35 421 -5 257 319 76 50 chr3 122150872 122150991 -105373587 - L2 LINE L2 -8 3264 3143 548 325 153 47 chr3 122151219 122152667 -105371911 + L2 LINE L2 1353 2953 -361 743 240 79 22 chr3 122152725 122152954 -105371624 + MIR SINE MIR 9 250 -12 294 272 163 0 chr3 122153455 122153547 -105371031 - L2 LINE L2 -229 3043 2937 256 304 10 20 chr3 122153715 122153817 -105370761 - L2 LINE L2 -611 2703 2603 479 257 99 123 chr3 122158250 122159161 -105365417 + L1M2 LINE L1 387 1388 -5461 343 276 82 22 chr3 122160690 122160824 -105363754 - MIR SINE MIR -53 209 68 422 222 162 0 chr3 122161537 122161654 -105362924 + L2 LINE L2 3178 3313 0 213 154 0 0 chr3 122161655 122161694 -105362884 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 2580 62 0 0 chr3 122161780 122162089 -105362489 - AluY SINE Alu -2 309 1 350 312 48 85 chr3 122162331 122162520 -105362058 + L2 LINE L2 2873 3054 -218 3209 171 51 2 chr3 122162701 122163229 -105361349 - MLT2B3 LTR ERVL 0 554 1 634 288 4 49 chr3 122163326 122163552 -105361026 + MIR SINE MIR 46 261 -1 2455 214 54 33 chr3 122164470 122165083 -105359495 - MLT1E2 LTR MaLR 0 626 1 314 333 170 0 chr3 122165084 122165249 -105359329 - MIR SINE MIR -48 214 22 1569 250 113 7 chr3 122165421 122165881 -105358697 - LTR33 LTR ERVL -11 510 2 875 173 103 98 chr3 122165944 122166313 -105358265 - MLT1C LTR MaLR 0 390 20 2321 65 0 62 chr3 122166341 122166664 -105357914 + AluSc SINE Alu 1 303 -6 757 291 17 0 chr3 122166685 122166864 -105357714 + MLT1I LTR MaLR 151 332 -77 933 219 22 0 chr3 122167753 122167936 -105356642 + MER5A DNA MER1_type 3 189 0 2329 124 41 16 chr3 122169095 122169459 -105355119 - THE1C LTR MaLR -2 373 1 1138 246 112 47 chr3 122170275 122170722 -105353856 - L2 LINE L2 -19 3294 2819 770 223 62 16 chr3 122170848 122171041 -105353537 - MER58A DNA MER1_type 0 224 23 740 268 180 4 chr3 122171050 122171311 -105353267 - L2 LINE L2 -688 2626 2320 268 283 0 0 chr3 122171312 122171372 -105353206 + MIR3 SINE MIR 142 201 -7 22 0 0 0 chr3 122172529 122172551 -105352027 + AT_rich Low_complexity Low_complexity 1 22 0 1073 195 112 20 chr3 122172781 122173032 -105351546 + MLT1C LTR MaLR 148 421 -46 2800 137 9 40 chr3 122173236 122173680 -105350898 - MSTB1 LTR MaLR 0 432 3 2463 258 46 20 chr3 122173691 122174254 -105350324 + MER20B DNA MER1_type 7 597 -186 1267 93 0 0 chr3 122174254 122174416 -105350162 + L1PA8 LINE L1 6008 6169 -3 2463 258 46 20 chr3 122174416 122174609 -105349969 + MER20B DNA MER1_type 597 783 0 569 233 128 0 chr3 122174649 122174805 -105349773 - MER5A DNA MER1_type -7 182 4 430 361 135 32 chr3 122174807 122175391 -105349187 - L2 LINE L2 -348 2966 2323 2130 101 0 0 chr3 122175632 122175909 -105348669 + AluSx SINE Alu 35 311 -1 229 328 0 0 chr3 122176261 122176322 -105348256 - MIR SINE MIR -121 141 81 183 42 0 0 chr3 122177495 122177519 -105347059 + (CA)n Simple_repeat Simple_repeat 2 25 0 740 205 104 115 chr3 122178905 122179252 -105345326 - MLT1A1 LTR MaLR -4 361 50 1851 298 80 29 chr3 122179301 122180124 -105344454 - L3 LINE CR1 -71 1506 642 617 306 6 16 chr3 122180162 122180345 -105344233 - MER5A DNA MER1_type -1 188 8 494 349 126 4 chr3 122180506 122180744 -105343834 - L3 LINE CR1 -1071 506 240 21 36 0 0 chr3 122181263 122181291 -105343287 + AT_rich Low_complexity Low_complexity 1 28 0 382 329 37 16 chr3 122181402 122181648 -105342930 - LTR16B LTR ERVL -154 310 60 390 262 179 31 chr3 122181685 122181914 -105342664 + LTR16A LTR ERVL 146 408 -42 501 269 34 51 chr3 122181916 122182137 -105342441 - MIR SINE MIR -37 225 8 531 228 9 18 chr3 122182735 122182849 -105341729 + MER81 DNA DNA 2 114 0 718 274 127 14 chr3 122182957 122183311 -105341267 - L1ME4a LINE L1 -37 6084 5691 274 298 54 12 chr3 122184165 122184333 -105340245 - L1ME3A LINE L1 -203 5967 5793 574 277 11 17 chr3 122184415 122184617 -105339961 - L1ME3A LINE L1 -502 5660 5461 198 313 90 24 chr3 122184824 122184991 -105339587 + MIR SINE MIR 16 189 -73 270 0 0 0 chr3 122186543 122186573 -105338005 + (TG)n Simple_repeat Simple_repeat 1 30 0 644 303 22 26 chr3 122186930 122187201 -105337377 + L1ME3 LINE L1 5678 5947 -215 * 1975 163 17 164 chr3 122186965 122187409 -105337169 + L1MA3 LINE L1 5713 6020 -285 1550 183 3 39 chr3 122187409 122187720 -105336858 + AluJb SINE Alu 3 302 -10 1975 163 17 164 chr3 122187720 122187969 -105336609 + L1MA3 LINE L1 6020 6304 -1 909 162 0 0 chr3 122188228 122188376 -105336202 + MER69 DNA AcHobo 2379 2526 0 246 278 56 0 chr3 122188596 122188668 -105335910 - L3 LINE CR1 -10 1567 1492 432 167 12 0 chr3 122188957 122189041 -105335537 + MER53 DNA DNA 1 85 -104 195 258 299 10 chr3 122189119 122189216 -105335362 - MIR SINE MIR -107 155 31 264 310 43 60 chr3 122190046 122190162 -105334416 - MIR SINE MIR -78 130 17 337 222 148 37 chr3 122190260 122190422 -105334156 - MIR SINE MIR 0 262 83 427 266 89 25 chr3 122190702 122190860 -105333718 + MIR3 SINE MIR 13 180 -28 30 45 0 0 chr3 122191182 122191226 -105333352 + AT_rich Low_complexity Low_complexity 1 44 0 309 329 44 15 chr3 122191598 122191735 -105332843 + MIR3 SINE MIR 41 181 -27 1397 151 49 105 chr3 122192197 122192320 -105332258 - MLT1B LTR MaLR -65 325 197 2699 91 36 6 chr3 122192320 122192684 -105331894 + THE1C LTR MaLR 1 375 0 1397 151 49 105 chr3 122192684 122192904 -105331674 - MLT1B LTR MaLR -193 197 1 278 342 18 0 chr3 122193534 122193648 -105330930 + (TG)n Simple_repeat Simple_repeat 1 116 0 278 231 0 0 chr3 122193763 122193815 -105330763 - MER112 DNA MER1_type -9 251 200 562 156 31 0 chr3 122193882 122193978 -105330600 + Charlie4 DNA MER1_type 1818 1916 -45 438 132 0 0 chr3 122194000 122194076 -105330502 + (CA)n Simple_repeat Simple_repeat 1 76 0 237 242 61 53 chr3 122194090 122194222 -105330356 - MER112 DNA MER1_type -62 198 66 2206 98 14 3 chr3 122194267 122194563 -105330015 - AluSc SINE Alu -10 299 1 28 0 0 0 chr3 122194641 122194669 -105329909 + AT_rich Low_complexity Low_complexity 1 28 0 304 283 192 0 chr3 122195431 122195530 -105329048 + L2 LINE L2 3193 3310 -3 242 236 42 0 chr3 122195632 122195704 -105328874 - MIR SINE MIR -60 202 128 579 324 58 26 chr3 122195925 122195964 -105328614 - LTR16B LTR ERVL -74 390 354 1845 196 38 19 chr3 122195964 122196332 -105328246 - THE1C LTR MaLR 0 375 1 579 324 58 26 chr3 122196332 122196635 -105327943 - LTR16B LTR ERVL -110 354 37 539 307 11 6 chr3 122196930 122197106 -105327472 - MER117 DNA MER1_type -18 179 3 23 0 0 0 chr3 122197250 122197273 -105327305 + AT_rich Low_complexity Low_complexity 1 23 0 217 314 144 0 chr3 122198588 122198706 -105325872 + MIR SINE MIR 9 143 -119 232 328 0 50 chr3 122198837 122198956 -105325622 + L2 LINE L2 3200 3312 -1 420 111 0 0 chr3 122199949 122200012 -105324566 + (CA)n Simple_repeat Simple_repeat 1 63 0 249 33 0 0 chr3 122201668 122201698 -105322880 + (CAAAAA)n Simple_repeat Simple_repeat 6 35 0 201 226 0 38 chr3 122202173 122202226 -105322352 + CT-rich Low_complexity Low_complexity 1 51 0 287 314 122 6 chr3 122202377 122202533 -105322045 - MIR SINE MIR -69 193 20 4213 79 58 31 chr3 122203791 122204408 -105320170 - MER51A LTR ERV1 0 634 1 813 185 0 25 chr3 122205583 122205740 -105318838 + Tigger1 DNA MER2_type 5 157 -2261 * 1116 147 49 0 chr3 122205732 122205936 -105318642 + Tigger1 DNA MER2_type 2205 2418 0 185 0 40 0 chr3 122206244 122206269 -105318309 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2125 112 3 7 chr3 122206271 122206566 -105318012 - AluSx SINE Alu -18 294 1 1883 157 3 3 chr3 122206623 122206917 -105317661 - AluSx SINE Alu -16 296 3 2397 154 43 2 chr3 122207084 122207499 -105317079 + Tigger2a DNA MER2_type 3 434 0 742 311 29 16 chr3 122207895 122208139 -105316439 - MIR SINE MIR -14 248 2 735 333 21 24 chr3 122208212 122208545 -105316033 + L2 LINE L2 2276 2607 -707 310 143 0 0 chr3 122208563 122208609 -105315969 - MLT2B1 LTR ERVL 0 515 470 334 217 0 0 chr3 122208609 122208669 -105315909 + Tigger5 DNA MER2_type 2 61 -2262 1316 137 4 70 chr3 122208693 122208755 -105315823 + Tigger5 DNA MER2_type 2084 2149 -174 2340 90 0 0 chr3 122208755 122209055 -105315523 + AluY SINE Alu 1 300 -11 1316 137 4 70 chr3 122209055 122209248 -105315330 + Tigger5 DNA MER2_type 2149 2322 -1 2496 184 62 0 chr3 122209249 122209700 -105314878 - MLT2B1 LTR ERVL -41 479 1 484 297 131 38 chr3 122209703 122210324 -105314254 + L2 LINE L2 2627 3309 -4 1833 155 0 27 chr3 122210359 122210655 -105313923 - AluJo SINE Alu -23 289 2 2830 7 0 0 chr3 122210769 122211075 -105313503 - AluYb8 SINE Alu -12 306 1 277 291 25 0 chr3 122211615 122211694 -105312884 + MER5A DNA MER1_type 87 167 -22 209 311 14 14 chr3 122211647 122211721 -105312857 - MER5A DNA MER1_type -109 80 7 * 418 129 0 11 chr3 122211746 122211986 -105312592 + AluJb SINE Alu 3 304 -8 357 241 45 27 chr3 122212595 122212707 -105311871 - MIR3 SINE MIR -4 204 91 296 407 0 0 chr3 122212847 122212965 -105311613 + L2 LINE L2 3180 3297 -16 1634 229 76 16 chr3 122213072 122213508 -105311070 + MLT1C LTR MaLR 6 467 0 392 215 117 121 chr3 122213690 122213913 -105310665 + MLT1H1 LTR MaLR 328 549 -6 595 326 79 10 chr3 122213919 122214223 -105310355 - LTR16C LTR ERVL -8 483 159 495 246 18 0 chr3 122214388 122214498 -105310080 - MER81 DNA DNA -2 112 1 2911 80 17 88 chr3 122215251 122215729 -105308849 - MLT2A1 LTR ERVL 0 444 1 1522 91 10 0 chr3 122216013 122216221 -105308357 + L1PA7 LINE L1 5940 6149 -5 302 409 0 9 chr3 122216433 122216548 -105308030 + L2 LINE L2 3158 3271 -1 2170 154 72 10 chr3 122216586 122216989 -105307589 + MSTA LTR MaLR 1 428 0 702 243 93 37 chr3 122216989 122217257 -105307321 - L1MC4a LINE L1 -1896 5912 5630 197 357 93 21 chr3 122218296 122218436 -105306142 + MIR3 SINE MIR 1 150 -58 286 233 240 7 chr3 122219260 122219406 -105305172 - Charlie8 DNA MER1_type -2152 265 86 203 274 55 0 chr3 122220470 122220543 -105304035 - MIR SINE MIR -59 203 127 457 244 135 13 chr3 122222026 122222182 -105302396 + MIR SINE MIR 76 250 -12 322 354 56 60 chr3 122222339 122222802 -105301776 + L2 LINE L2 2804 3264 -8 2113 109 0 3 chr3 122222992 122223318 -105301260 + AluSq SINE Alu 1 325 0 309 258 42 84 chr3 122224012 122224179 -105300399 + MER63A DNA MER1_type 51 210 0 189 376 64 0 chr3 122224218 122224343 -105300235 - MIR3 SINE MIR -6 202 70 2389 232 101 50 chr3 122224343 122225115 -105299463 + MER21B LTR ERV1 1 811 -52 211 283 38 0 chr3 122225147 122225200 -105299378 - MIR SINE MIR -131 77 23 186 308 115 13 chr3 122225610 122225622 -105298956 + MER5A DNA MER1_type 3 22 -167 202 224 149 0 chr3 122225622 122225689 -105298889 - MER5A DNA MER1_type -1 188 112 529 180 0 0 chr3 122225742 122225831 -105298747 - MER2 DNA MER2_type -256 89 1 3831 190 118 90 chr3 122226202 122226543 -105298035 - L1MC4 LINE L1 -3 8039 7709 1971 120 0 79 chr3 122226543 122226909 -105297669 + MER1B DNA MER1_type 1 337 0 3831 190 118 90 chr3 122226909 122228003 -105296575 - L1MC4 LINE L1 -333 7709 6564 248 322 153 0 chr3 122228142 122228260 -105296318 - L2 LINE L2 0 3272 3137 21 36 0 0 chr3 122228912 122228940 -105295638 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 122228990 122229015 -105295563 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 122233414 122233435 -105291143 + AT_rich Low_complexity Low_complexity 1 21 0 255 89 54 0 chr3 122235005 122235061 -105289517 + (TA)n Simple_repeat Simple_repeat 1 59 0 6818 67 15 0 chr3 122235942 122237180 -105287398 - L1PA8 LINE L1 -2 6170 4922 8361 101 2 2 chr3 122237180 122238383 -105286195 + L1PA8 LINE L1 3708 4909 -1237 521 319 35 6 chr3 122238641 122238810 -105285768 - MIR3 SINE MIR -1 207 34 253 200 20 0 chr3 122238939 122238989 -105285589 - L3 LINE CR1 -3 1574 1524 218 271 0 0 chr3 122238993 122239041 -105285537 - MIR3 SINE MIR -38 170 123 225 250 0 0 chr3 122239390 122239442 -105285136 + (CATA)n Simple_repeat Simple_repeat 1 52 0 21 0 0 0 chr3 122239498 122239519 -105285059 + AT_rich Low_complexity Low_complexity 1 21 0 255 304 110 105 chr3 122239604 122240342 -105284236 - L2 LINE L2 -225 3047 2310 225 257 162 7 chr3 122240483 122240619 -105283959 + L1ME4a LINE L1 5634 5790 -331 2068 153 14 3 chr3 122240875 122241227 -105283351 - MER47A DNA MER2_type -4 362 7 387 0 0 0 chr3 122241229 122241272 -105283306 + (TG)n Simple_repeat Simple_repeat 2 44 0 432 0 0 0 chr3 122241460 122241508 -105283070 + (TG)n Simple_repeat Simple_repeat 2 49 0 270 234 43 0 chr3 122241523 122241617 -105282961 + L1ME4a LINE L1 6024 6121 0 543 286 35 60 chr3 122242079 122242414 -105282164 + MLT1I LTR MaLR 71 543 -6 289 244 37 24 chr3 122244314 122244396 -105280182 - MIR SINE MIR -1 261 179 1754 248 85 42 chr3 122244699 122245561 -105279017 + L1ME LINE L1 3511 4409 -1737 1348 232 95 59 chr3 122245556 122246495 -105278083 + L1ME LINE L1 4791 5748 -414 * 242 287 104 43 chr3 122246527 122246642 -105277936 - LTR16A LTR ERVL -328 122 1 1574 205 34 48 chr3 122250736 122251203 -105273375 + MER89 LTR ERV1 1 559 0 21 0 0 0 chr3 122251472 122251493 -105273085 + AT_rich Low_complexity Low_complexity 1 21 0 7420 137 21 22 chr3 122251750 122253013 -105271565 + Tigger2 DNA MER2_type 1 1262 -1456 933 66 16 0 chr3 122253013 122253135 -105271443 - AluSp/q SINE Alu -4 309 186 8601 122 39 13 chr3 122253135 122254564 -105270014 + Tigger2 DNA MER2_type 1253 2718 0 320 147 0 59 chr3 122254973 122255041 -105269537 + MER41A LTR ERV1 400 463 -91 198 0 0 0 chr3 122255291 122255313 -105269265 + (TTTTC)n Simple_repeat Simple_repeat 3 24 0 1573 68 5 0 chr3 122255400 122255607 -105268971 - L1PA5 LINE L1 0 6154 5947 1868 146 136 25 chr3 122257157 122257554 -105267024 - Tigger2 DNA MER2_type 0 2718 2278 257 152 43 0 chr3 122257549 122257595 -105266983 - Tigger2 DNA MER2_type -2649 69 22 * 1023 80 11 40 chr3 122257595 122257771 -105266807 + THE1C-int LTR MaLR 1410 1580 0 1857 139 49 38 chr3 122257775 122258142 -105266436 + THE1C LTR MaLR 5 375 0 2235 118 0 0 chr3 122258258 122258554 -105266024 - AluSg SINE Alu -14 296 1 1231 117 0 0 chr3 122259491 122259662 -105264916 + AluY SINE Alu 138 308 -3 924 205 0 19 chr3 122259662 122259823 -105264755 + AluJo/FRAM SINE Alu 137 294 -8 274 304 87 51 chr3 122260522 122260834 -105263744 - LTR49-int LTR ERV1 -2461 2186 1864 333 336 25 0 chr3 122261045 122261167 -105263411 - MER70-int LTR ERVL -3175 2589 2465 1257 108 25 10 chr3 122261167 122261371 -105263207 - LTR30 LTR ERV1 0 722 516 40386 37 27 2 chr3 122261697 122267713 -105256865 - L1PA4 LINE L1 0 6155 3 348 206 0 0 chr3 122267715 122267778 -105256800 + MER63 DNA MER1_type 995 1057 -5 456 252 31 57 chr3 122268792 122268951 -105255627 + MER20B DNA MER1_type 2 156 -627 928 194 68 25 chr3 122269926 122270163 -105254415 + MLT1A2 LTR MaLR 128 374 0 728 203 125 17 chr3 122270238 122270470 -105254108 + MER20B DNA MER1_type 524 780 -3 6184 177 40 39 chr3 122270685 122270721 -105253857 + L1MC3 LINE L1 5444 5478 -2307 366 23 0 0 chr3 122270721 122270764 -105253814 + (CA)n Simple_repeat Simple_repeat 2 44 0 6184 177 40 39 chr3 122270764 122272103 -105252475 + L1MC3 LINE L1 5478 6820 -965 4771 196 31 10 chr3 122272104 122272307 -105252271 + L1MD1 LINE L1 5007 5204 -1038 1716 160 3 17 chr3 122272307 122272594 -105251984 + AluJo SINE Alu 24 306 -6 4771 196 31 10 chr3 122272594 122273606 -105250972 + L1MD1 LINE L1 5204 6236 -6 321 274 148 61 chr3 122273760 122273989 -105250589 + MIR SINE MIR 16 261 -1 1969 128 68 6 chr3 122274251 122274588 -105249990 - LTR45B LTR ERV1 -131 358 1 1466 210 65 0 chr3 122274783 122275107 -105249471 - MER101 LTR ERV1 -104 370 26 280 295 0 0 chr3 122275615 122275710 -105248868 - MER70-int LTR ERVL -352 4671 4577 601 252 7 7 chr3 122276889 122277024 -105247554 - LTR49-int LTR ERV1 -1130 3741 3607 690 200 96 43 chr3 122277110 122277466 -105247112 - LTR49-int LTR ERV1 -977 3959 3510 1070 224 125 41 chr3 122277538 122278168 -105246410 - LTR49-int LTR ERV1 -1666 4021 2607 1066 210 99 81 chr3 122278224 122279172 -105245406 - LTR49-int LTR ERV1 -2868 3730 1541 2782 91 5 3 chr3 122279206 122279580 -105244998 - THE1C LTR MaLR 0 375 1 10371 102 41 38 chr3 122279580 122281155 -105243423 - THE1C-int LTR MaLR 0 1580 1 2672 94 36 3 chr3 122281155 122281518 -105243060 - THE1C LTR MaLR 0 375 1 1015 180 31 24 chr3 122281566 122281821 -105242757 - LTR57-int LTR ERVL -3767 1576 1320 1018 218 28 59 chr3 122281847 122282201 -105242377 - LTR49-int LTR ERV1 -3211 3120 2778 2281 106 0 0 chr3 122282890 122283183 -105241395 - AluSx SINE Alu -19 293 1 2015 149 34 26 chr3 122283840 122284223 -105240355 - LTR45B LTR ERV1 -101 388 3 354 229 182 33 chr3 122284391 122284605 -105239973 - L1ME4a LINE L1 -201 5920 5675 225 0 0 0 chr3 122287461 122287486 -105237092 + (CAATA)n Simple_repeat Simple_repeat 1 25 0 7473 162 23 1 chr3 122287695 122288931 -105235647 + L1PA12 LINE L1 5 1267 -6314 3070 115 17 0 chr3 122288928 122289516 -105235062 + L1PA14 LINE L1 5415 6152 -9 * 2556 298 48 19 chr3 122289790 122290904 -105233674 + HERV16 LTR ERVL 617 1830 -3166 2734 309 38 10 chr3 122290925 122291863 -105232715 + HERV16 LTR ERVL 2110 3074 -1922 308 244 132 35 chr3 122291863 122292060 -105232518 + LTR16B LTR ERVL 249 464 0 661 162 0 0 chr3 122292805 122292904 -105231674 - AluJ/FLAM SINE Alu -213 99 1 575 215 16 94 chr3 122292971 122293162 -105231416 + MER69A DNA AcHobo 2 177 0 279 400 44 6 chr3 122293179 122293359 -105231219 - L2 LINE L2 -527 2787 2601 1064 208 78 28 chr3 122293970 122294317 -105230261 - MSTD LTR MaLR 0 396 1 730 271 78 12 chr3 122296235 122296490 -105228088 + LTR16A1 LTR ERVL 1 272 -185 211 346 173 19 chr3 122296513 122296721 -105227857 + L2 LINE L2 2508 2747 -567 260 269 148 28 chr3 122297683 122297865 -105226713 + MER102b DNA MER1_type 123 326 -15 906 156 61 11 chr3 122297950 122298130 -105226448 + MER20 DNA MER1_type 29 217 -2 308 331 107 55 chr3 122298303 122298611 -105225967 - L1M4 LINE L1 -1036 5110 4787 1420 206 59 89 chr3 122299228 122299787 -105224791 + MER34 LTR ERV1 1 542 0 2446 83 0 3 chr3 122300043 122300345 -105224233 - AluSx SINE Alu -11 301 1 924 113 0 0 chr3 122300397 122300521 -105224057 + AluSc SINE Alu 177 300 -9 333 296 56 21 chr3 122303581 122303723 -105220855 - L1ME4a LINE L1 -4 6117 5971 1012 209 11 0 chr3 122304553 122304740 -105219838 + MER5A DNA MER1_type 1 189 0 417 271 17 94 chr3 122305202 122305383 -105219195 - MER5B DNA MER1_type -4 174 8 26 30 0 0 chr3 122307369 122307402 -105217176 + AT_rich Low_complexity Low_complexity 1 33 0 405 165 13 0 chr3 122307829 122307908 -105216670 + MER116 DNA Mariner 1 80 0 5010 147 63 34 chr3 122308161 122309505 -105215073 - L1MA6 LINE L1 0 6300 4906 1625 145 93 4 chr3 122309855 122310124 -105214454 - AluJb SINE Alu -19 293 1 230 287 20 10 chr3 122310317 122310418 -105214160 + L1MC4a LINE L1 4944 5045 -1101 821 294 93 30 chr3 122310610 122311266 -105213312 + L1MC4a LINE L1 5314 6010 -111 2379 130 52 26 chr3 122312121 122312543 -105212035 - Tigger2a DNA MER2_type 0 434 2 1209 154 53 18 chr3 122312754 122312981 -105211597 - MSTB LTR MaLR 0 426 192 655 197 23 15 chr3 122313030 122313162 -105211416 + FLAM_C SINE Alu 1 133 0 1394 180 12 4 chr3 122313168 122313412 -105211166 + AluJo SINE Alu 46 291 -21 294 266 0 13 chr3 122313779 122313858 -105210720 - L2 LINE L2 0 3313 3236 280 377 14 7 chr3 122313850 122313996 -105210582 - L2 LINE L2 -366 2948 2802 * 315 330 0 10 chr3 122314252 122314349 -105210229 + L2 LINE L2 3204 3299 -14 2201 124 3 0 chr3 122314771 122315070 -105209508 + AluSx SINE Alu 1 300 -12 24 0 0 0 chr3 122315157 122315181 -105209397 + AT_rich Low_complexity Low_complexity 1 24 0 1901 208 109 21 chr3 122315421 122315465 -105209113 - MLT2B1 LTR ERVL 0 520 481 207 0 0 0 chr3 122315465 122315488 -105209090 + (CA)n Simple_repeat Simple_repeat 2 24 0 1901 208 109 21 chr3 122315488 122315919 -105208659 - MLT2B1 LTR ERVL -39 481 3 5871 132 60 10 chr3 122315920 122316901 -105207677 - ERVL-B1 LTR ERVL -6 5758 4729 2624 43 0 0 chr3 122317342 122317643 -105206935 - AluY SINE Alu -10 301 1 558 202 46 0 chr3 122317644 122317753 -105206825 - MER5A DNA MER1_type -72 117 4 50 0 0 0 chr3 122318653 122318703 -105205875 + AT_rich Low_complexity Low_complexity 1 50 0 489 99 80 0 chr3 122319292 122319553 -105205025 + (TA)n Simple_repeat Simple_repeat 1 281 0 29 0 0 0 chr3 122319554 122319583 -105204995 + AT_rich Low_complexity Low_complexity 1 29 0 196 164 30 0 chr3 122319583 122319650 -105204928 + (TATAA)n Simple_repeat Simple_repeat 5 73 0 645 280 28 28 chr3 122319985 122320199 -105204379 + MIR SINE MIR 30 243 -19 200 327 208 0 chr3 122320252 122320353 -105204225 + L2 LINE L2 3150 3271 -1 386 294 127 41 chr3 122321526 122321771 -105202807 + L2 LINE L2 3048 3313 0 498 240 110 7 chr3 122322052 122322206 -105202372 - LTR16A LTR ERVL -4 446 277 240 326 181 0 chr3 122322242 122322386 -105202192 - LTR16A LTR ERVL -268 182 13 28 86 0 0 chr3 122323612 122323682 -105200896 + AT_rich Low_complexity Low_complexity 1 70 0 354 314 75 11 chr3 122324234 122324422 -105200156 + MIR SINE MIR 46 245 -17 23 33 0 0 chr3 122324839 122324869 -105199709 + AT_rich Low_complexity Low_complexity 1 30 0 262 263 92 0 chr3 122325680 122325756 -105198822 + L2 LINE L2 3227 3309 -4 293 200 10 64 chr3 122326306 122326423 -105198155 + L1MC4 LINE L1 7686 8029 -13 300 240 66 41 chr3 122326501 122326622 -105197956 + L1P LINE L1 4879 5002 -1144 2053 142 3 0 chr3 122326664 122326959 -105197619 + AluSx SINE Alu 1 296 -16 528 290 120 10 chr3 122327198 122327398 -105197180 + MIR SINE MIR 14 235 -27 837 246 63 28 chr3 122327404 122327656 -105196922 - MIR SINE MIR -1 261 1 24 0 0 0 chr3 122328190 122328214 -105196364 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chr3 122329234 122329263 -105195315 + AT_rich Low_complexity Low_complexity 1 29 0 5802 155 21 18 chr3 122329285 122331267 -105193311 - L1MA4 LINE L1 -28 6272 4277 777 235 70 47 chr3 122332317 122332743 -105191835 - L1MC5 LINE L1 -27 7934 7499 22 80 0 0 chr3 122332743 122332793 -105191785 + AT_rich Low_complexity Low_complexity 1 50 0 1345 60 0 18 chr3 122333208 122333376 -105191202 - AluY SINE Alu -9 302 138 302 268 16 34 chr3 122334010 122334142 -105190436 + LTR16A1 LTR ERVL 319 480 -11 274 158 61 0 chr3 122335088 122335170 -105189408 + (TA)n Simple_repeat Simple_repeat 1 87 0 2253 108 3 0 chr3 122336976 122337273 -105187305 + AluSx SINE Alu 2 299 -13 825 283 32 8 chr3 122338350 122338601 -105185977 + LTR16B LTR ERVL 208 464 0 425 290 23 0 chr3 122339228 122339359 -105185219 - L1ME LINE L1 -477 5644 5511 600 88 0 0 chr3 122339469 122339549 -105185029 + MADE1 DNA Mariner 1 80 0 189 0 0 0 chr3 122340167 122340188 -105184390 + (A)n Simple_repeat Simple_repeat 1 21 0 1992 259 101 49 chr3 122340239 122341321 -105183257 - HAL1 LINE L1 -636 1871 734 800 243 104 56 chr3 122341516 122341890 -105182688 + LTR52 LTR ERVL 8 399 -22 455 262 36 107 chr3 122341975 122342120 -105182458 - HAL1 LINE L1 -2220 287 133 207 0 0 0 chr3 122342120 122342143 -105182435 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 455 262 36 107 chr3 122342143 122342202 -105182376 - HAL1 LINE L1 -2374 133 71 1914 57 50 44 chr3 122342202 122342500 -105182078 + L1MA1 LINE L1 6003 6302 0 455 262 36 107 chr3 122342500 122342603 -105181975 - HAL1 LINE L1 -2436 71 1 255 289 72 62 chr3 122343481 122343689 -105180889 - L1ME3A LINE L1 -1 6169 5960 290 247 0 12 chr3 122343747 122343828 -105180750 - L1ME3A LINE L1 -208 5962 5883 29 47 0 0 chr3 122344175 122344218 -105180360 + AT_rich Low_complexity Low_complexity 1 43 0 2065 152 33 30 chr3 122345304 122345665 -105178913 - THE1B LTR MaLR 0 364 3 666 240 119 72 chr3 122345987 122346724 -105177854 - L1MEc LINE L1 -4612 1784 1013 558 44 0 0 chr3 122348612 122348680 -105175898 + AluSg/x SINE Alu 164 231 -81 415 270 58 49 chr3 122349000 122349226 -105175352 - HAL1b LINE L1 -994 354 127 24 67 0 0 chr3 122349512 122349557 -105175021 + AT_rich Low_complexity Low_complexity 1 45 0 722 235 66 103 chr3 122350200 122350598 -105173980 - MLT1D LTR MaLR 0 505 1 410 210 48 40 chr3 122350723 122350847 -105173731 + LTR33 LTR ERVL 337 461 -60 284 271 49 41 chr3 122351124 122351246 -105173332 - LTR16C LTR ERVL -2 489 367 227 315 0 11 chr3 122351745 122351834 -105172744 - L1M4 LINE L1 -2267 3879 3792 872 259 135 54 chr3 122351835 122352264 -105172314 + LTR16B LTR ERVL 1 464 0 269 207 12 148 chr3 122352393 122352562 -105172016 - L1M4 LINE L1 -2573 3573 3428 21 36 0 0 chr3 122352763 122352791 -105171787 + AT_rich Low_complexity Low_complexity 1 28 0 1383 60 16 0 chr3 122352907 122353091 -105171487 + L1P LINE L1 3920 4106 -2040 3678 90 8 11 chr3 122353091 122353623 -105170955 - LTR30 LTR ERV1 -192 530 1 623 371 26 13 chr3 122353633 122353777 -105170801 - ERVL LTR ERVL -3306 2458 2317 2092 128 3 3 chr3 122353777 122354081 -105170497 - AluSx SINE Alu -8 304 1 623 371 26 13 chr3 122354081 122354249 -105170329 - ERVL LTR ERVL -3447 2317 2142 319 322 70 7 chr3 122354496 122354639 -105169939 - ERVL LTR ERVL -3595 2059 1908 2220 137 33 25 chr3 122354693 122355052 -105169526 - THE1B LTR MaLR -2 362 1 10322 112 15 10 chr3 122355058 122356625 -105167953 - THE1B-int LTR MaLR -6 1574 1 2162 111 40 26 chr3 122356628 122356980 -105167598 - THE1B LTR MaLR -7 357 1 870 350 42 48 chr3 122356989 122357855 -105166723 - ERVL LTR ERVL -4131 865 6 1146 308 22 10 chr3 122357862 122358278 -105166300 - LTR16B LTR ERVL 0 464 44 349 286 189 35 chr3 122358371 122358720 -105165858 - L1MEc LINE L1 -4482 1647 1279 481 294 105 54 chr3 122358788 122359457 -105165121 - L1MEc LINE L1 -4976 1143 441 217 402 69 0 chr3 122360568 122360655 -105163923 - L2 LINE L2 -18 3254 3162 343 302 132 8 chr3 122362079 122362208 -105162370 - MIR SINE MIR -50 212 68 1359 271 48 46 chr3 122362216 122362294 -105162284 + L1MDa LINE L1 26 102 -6438 360 0 0 0 chr3 122362294 122362334 -105162244 + (CA)n Simple_repeat Simple_repeat 2 41 0 1359 271 48 46 chr3 122362334 122362869 -105161709 + L1MDa LINE L1 102 1034 -5506 * 3786 161 69 27 chr3 122362867 122363783 -105160795 + L1MD1 LINE L1 5153 6104 -138 2092 168 16 0 chr3 122363785 122364160 -105160418 + MLT1B LTR MaLR 4 384 -6 605 187 22 29 chr3 122364160 122364299 -105160279 + L1MD1 LINE L1 6093 6230 -12 2402 95 0 0 chr3 122365365 122365670 -105158908 - AluSg SINE Alu -4 306 2 38 22 0 0 chr3 122366158 122366203 -105158375 + AT_rich Low_complexity Low_complexity 1 45 0 189 167 0 0 chr3 122366204 122366258 -105158320 + (TA)n Simple_repeat Simple_repeat 2 55 0 26 50 0 0 chr3 122366339 122366379 -105158199 + AT_rich Low_complexity Low_complexity 1 40 0 3912 104 5 2 chr3 122367670 122368245 -105156333 - L1PA14 LINE L1 0 6161 5585 9099 147 17 5 chr3 122368245 122369906 -105154672 + L1P LINE L1 3622 5301 -845 386 276 31 36 chr3 122369906 122370102 -105154476 - LTR16C LTR ERVL -51 440 246 1215 60 0 60 chr3 122372231 122372399 -105152179 + AluY SINE Alu 1 158 -153 1188 68 0 0 chr3 122372640 122372787 -105151791 + AluY SINE Alu 161 307 -4 605 187 22 29 chr3 122373853 122373992 -105150586 - L1MD1 LINE L1 -12 6230 6093 2092 168 16 0 chr3 122373992 122374367 -105150211 - MLT1B LTR MaLR -6 384 4 3786 161 69 27 chr3 122374369 122375285 -105149293 - L1MD1 LINE L1 -138 6104 5153 1359 271 48 46 chr3 122375283 122375818 -105148760 - L1MDa LINE L1 -5506 1034 102 * 360 0 0 0 chr3 122375818 122375858 -105148720 + (TG)n Simple_repeat Simple_repeat 2 41 0 1359 271 48 46 chr3 122375858 122375936 -105148642 - L1MDa LINE L1 -6438 102 26 343 302 132 8 chr3 122375944 122376073 -105148505 + MIR SINE MIR 68 212 -50 217 402 69 0 chr3 122377498 122377585 -105146993 + L2 LINE L2 3162 3254 -18 481 294 105 54 chr3 122378695 122379364 -105145214 + L1MEd LINE L1 441 1143 -4976 300 267 0 33 chr3 122379931 122380021 -105144557 - L2 LINE L2 -3 3310 3224 485 242 187 9 chr3 122381468 122381687 -105142891 + MIR SINE MIR 2 259 -3 1170 163 18 46 chr3 122381874 122381946 -105142632 - L1MD3 LINE L1 -6 7989 7916 2311 92 7 0 chr3 122381946 122382241 -105142337 + AluSq SINE Alu 1 297 -16 1170 163 18 46 chr3 122382241 122382451 -105142127 - L1MD3 LINE L1 -79 7916 7715 6944 116 11 4 chr3 122382463 122384076 -105140502 - L1MA1 LINE L1 0 6302 4679 1226 195 57 3 chr3 122384076 122384374 -105140204 - L1MD3 LINE L1 -263 7732 7419 489 198 0 28 chr3 122384374 122384480 -105140098 - MLT1F1 LTR MaLR -429 138 36 523 208 114 47 chr3 122384481 122384717 -105139861 - L1MD3 LINE L1 -877 7118 6867 369 231 39 70 chr3 122386518 122386674 -105137904 + LTR33A LTR ERVL 26 176 -347 541 212 79 32 chr3 122386771 122386960 -105137618 + LTR33A LTR ERVL 317 514 -9 1182 263 62 19 chr3 122387001 122387434 -105137144 + LTR16A1 LTR ERVL 4 455 -2 187 284 111 12 chr3 122388340 122388421 -105136157 + MIR3 SINE MIR 15 103 -105 214 350 111 8 chr3 122389338 122389455 -105135123 - MIR SINE MIR -115 147 19 211 239 0 0 chr3 122390677 122390723 -105133855 + A-rich Low_complexity Low_complexity 1 46 0 248 370 148 0 chr3 122390863 122390971 -105133607 - L2 LINE L2 -15 3257 3134 562 335 78 6 chr3 122391604 122391783 -105132795 + MER91A DNA MER1_type 1 192 -4 2410 94 0 0 chr3 122392166 122392465 -105132113 - AluSg SINE Alu -11 299 1 2239 111 3 0 chr3 122392493 122392790 -105131788 + AluSx SINE Alu 2 299 -13 406 295 69 14 chr3 122393364 122393652 -105130926 - L1MEd LINE L1 -4862 1257 954 2234 112 3 0 chr3 122393907 122394202 -105130376 + AluSx SINE Alu 1 296 -16 538 276 55 15 chr3 122394449 122394648 -105129930 - MIR SINE MIR -13 249 43 1747 232 102 17 chr3 122395882 122396351 -105128227 - MLT1F LTR MaLR -10 532 24 2069 227 115 9 chr3 122396366 122396939 -105127639 + MLT1E1 LTR MaLR 5 638 -16 333 339 9 9 chr3 122397200 122397312 -105127266 + MER5A DNA MER1_type 6 117 -72 235 296 148 0 chr3 122397235 122397323 -105127255 - MER5A DNA MER1_type -29 160 60 * 407 307 69 18 chr3 122397340 122397672 -105126906 - L1MC4 LINE L1 0 8042 7694 187 262 24 0 chr3 122397679 122397721 -105126857 + MER5A DNA MER1_type 4 46 -143 26 0 0 0 chr3 122398206 122398232 -105126346 + AT_rich Low_complexity Low_complexity 1 26 0 252 252 195 0 chr3 122398494 122398617 -105125961 - L1ME LINE L1 -359 5762 5616 274 358 21 0 chr3 122399275 122399370 -105125208 - MIR SINE MIR -153 109 13 697 127 204 0 chr3 122399447 122399604 -105124974 + MER53 DNA DNA 1 189 0 216 0 0 0 chr3 122399653 122399677 -105124901 + (A)n Simple_repeat Simple_repeat 1 24 0 317 250 12 0 chr3 122400964 122401044 -105123534 + ERVL LTR ERVL 2460 2540 -3224 457 316 124 21 chr3 122401300 122401591 -105122987 + ERVL LTR ERVL 3530 3850 -1914 596 333 73 31 chr3 122401838 122402704 -105121874 + ERVL LTR ERVL 4152 5089 -675 839 221 145 31 chr3 122403113 122403403 -105121175 + MER5C DNA MER1_type 2 324 0 219 131 0 56 chr3 122404162 122404269 -105120309 + (TA)n Simple_repeat Simple_repeat 2 102 0 255 229 43 0 chr3 122404360 122404430 -105120148 - MLT1K LTR MaLR -7 581 509 385 179 0 0 chr3 122405035 122405102 -105119476 + MER94 DNA DNA 6 72 -62 482 327 95 19 chr3 122405409 122405620 -105118958 + MIR SINE MIR 6 232 -30 189 348 94 33 chr3 122405938 122406119 -105118459 - L2 LINE L2 -1410 1904 1713 360 0 0 0 chr3 122406963 122407003 -105117575 + (TTCC)n Simple_repeat Simple_repeat 1 40 0 2171 122 10 0 chr3 122407003 122407307 -105117271 - AluSx SINE Alu -5 307 1 432 304 82 23 chr3 122407767 122407987 -105116591 - MLT1L LTR MaLR -35 580 348 2292 118 0 3 chr3 122408306 122408619 -105115959 - AluSq SINE Alu -1 312 1 180 0 0 0 chr3 122410867 122410887 -105113691 + (CAA)n Simple_repeat Simple_repeat 2 21 0 311 221 58 10 chr3 122411165 122411269 -105113309 - LTR16A1 LTR ERVL -82 375 267 330 200 13 0 chr3 122412718 122412793 -105111785 - L1MA8 LINE L1 -11 6280 6205 1788 294 100 51 chr3 122413498 122414704 -105109874 - L2 LINE L2 -462 2852 1587 3257 48 31 0 chr3 122414704 122415119 -105109459 - L1PA7 LINE L1 0 6154 5727 3853 82 0 9 chr3 122415121 122415703 -105108875 + L1P LINE L1 3068 3644 -2502 245 349 172 11 chr3 122415707 122415968 -105108610 - L2 LINE L2 -1723 1591 1289 350 119 51 0 chr3 122416562 122416621 -105107957 - L1PA16 LINE L1 -13 6153 6092 2185 134 0 6 chr3 122416724 122417038 -105107540 - AluSx SINE Alu 0 312 1 325 279 73 22 chr3 122417618 122417797 -105106781 - L1ME4a LINE L1 -180 5941 5754 21 0 0 0 chr3 122418094 122418115 -105106463 + AT_rich Low_complexity Low_complexity 1 21 0 326 282 130 34 chr3 122419842 122420119 -105104459 - L1ME4a LINE L1 -182 5939 5632 21 71 0 0 chr3 122420411 122420453 -105104125 + AT_rich Low_complexity Low_complexity 1 42 0 212 171 0 0 chr3 122420643 122420678 -105103900 + (CATATA)n Simple_repeat Simple_repeat 5 39 0 2351 107 0 7 chr3 122422071 122422381 -105102197 - AluSg SINE Alu -2 308 1 412 98 16 0 chr3 122424457 122424518 -105100060 + LTR30 LTR ERV1 469 530 -192 2148 22 4 0 chr3 122424518 122424787 -105099791 - L1PA4 LINE L1 -2040 4106 3837 10411 31 27 0 chr3 122424787 122426809 -105097769 + L1PA4 LINE L1 4120 6155 0 1191 113 30 10 chr3 122427135 122427338 -105097240 + LTR30 LTR ERV1 516 722 0 333 336 25 0 chr3 122427338 122427460 -105097118 + HERVL LTR ERVL 2426 2550 -3104 274 304 87 51 chr3 122427671 122427983 -105096595 + MER110-int LTR ERV1 1864 2186 -2461 1505 185 15 12 chr3 122428682 122428843 -105095735 - AluJo SINE Alu -18 294 130 2300 103 0 7 chr3 122428843 122429153 -105095425 - AluY SINE Alu -3 308 1 1505 185 15 12 chr3 122429153 122429250 -105095328 - AluJo SINE Alu -182 130 35 798 207 114 0 chr3 122430757 122430950 -105093628 + MER58C DNA MER1_type 1 215 0 2145 112 66 23 chr3 122431698 122432047 -105092531 - THE1B LTR MaLR 0 364 1 600 327 65 23 chr3 122433576 122433928 -105090650 + MLT1I LTR MaLR 41 407 -2 2389 85 0 0 chr3 122433971 122434276 -105090302 - AluY SINE Alu -6 305 1 408 273 81 34 chr3 122434399 122434696 -105089882 + L1ME LINE L1 5254 5564 -614 529 224 16 16 chr3 122435187 122435312 -105089266 + MER63 DNA MER1_type 1 751 -311 1281 120 36 9 chr3 122435352 122435577 -105089001 - L1MB3 LINE L1 -26 6157 5927 623 259 78 5 chr3 122435580 122435785 -105088793 - MLT1A2 LTR MaLR 0 374 155 2236 128 0 3 chr3 122435809 122436122 -105088456 - AluSx SINE Alu 0 312 1 388 177 126 1 chr3 122436197 122436297 -105088281 + MLT1B LTR MaLR 1 112 -276 774 113 0 75 chr3 122436304 122436437 -105088141 - AluSp SINE Alu -162 151 29 438 157 0 43 chr3 122436478 122436576 -105088002 - L1MB3 LINE L1 -258 5904 5812 30148 28 4 1 chr3 122436577 122441156 -105083422 - L1PA2 LINE L1 -4 6151 1560 202 304 0 0 chr3 122442611 122442657 -105081921 + MIR SINE MIR 64 109 -99 592 115 11 0 chr3 122442800 122442887 -105081691 - Tigger7 DNA MER2_type 0 2487 2400 * 4974 171 70 10 chr3 122442885 122443853 -105080725 - Tigger7 DNA MER2_type -1461 1026 1 2341 169 90 4 chr3 122444198 122444665 -105079913 + Tigger7 DNA MER2_type 15 521 -1966 480 100 44 33 chr3 122444666 122444756 -105079822 + Tigger7 DNA MER2_type 2401 2491 0 341 306 35 12 chr3 122445539 122445712 -105078866 + L1ME LINE L1 5531 5707 -414 227 276 23 58 chr3 122446194 122446281 -105078297 - MIR3 SINE MIR -15 193 110 14995 94 13 1 chr3 122446990 122449946 -105074632 - L1PA8 LINE L1 0 6172 3191 8167 153 14 21 chr3 122449948 122451556 -105073022 + L1PA12 LINE L1 1376 3759 -3825 252 0 0 0 chr3 122451556 122451584 -105072994 + (A)n Simple_repeat Simple_repeat 1 28 0 29 47 0 0 chr3 122452206 122452249 -105072329 + AT_rich Low_complexity Low_complexity 1 43 0 197 295 82 0 chr3 122452638 122452699 -105071879 - MIR SINE MIR -95 113 48 1989 115 15 0 chr3 122453105 122453436 -105071142 + L1P LINE L1 2748 3083 -3063 29390 33 2 3 chr3 122453444 122459605 -105064973 + L1PA4 LINE L1 1 6154 -1 684 95 9 0 chr3 122459637 122459753 -105064825 + L1P LINE L1 3068 3184 -2962 470 290 180 9 chr3 122459760 122459977 -105064601 - LTR33 LTR ERVL -260 261 8 1544 144 87 109 chr3 122461977 122462435 -105062143 + LTR7 LTR ERV1 1 448 -2 2903 52 22 0 chr3 122462901 122463268 -105061310 + L1PA8A LINE L1 5455 5829 -302 5016 65 18 4 chr3 122463368 122464042 -105060536 + L1PA8A LINE L1 5456 6170 -2 348 290 22 29 chr3 122464626 122464764 -105059814 + MLT1L LTR MaLR 141 277 -338 244 178 44 0 chr3 122464849 122464894 -105059684 + MLT1L LTR MaLR 446 492 -123 919 279 159 27 chr3 122464907 122465491 -105059087 - MLT2F LTR ERVL -2 661 1 23 0 0 0 chr3 122467340 122467363 -105057215 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr3 122468309 122468333 -105056245 + AT_rich Low_complexity Low_complexity 1 24 0 380 285 89 56 chr3 122471263 122471685 -105052893 + LTR16B LTR ERVL 2 452 -11 573 244 96 24 chr3 122474500 122474709 -105049869 - L2 LINE L2 -3 3310 3087 192 294 20 0 chr3 122474805 122474856 -105049722 - L2 LINE L2 -360 2953 2902 244 287 147 39 chr3 122475128 122475257 -105049321 - L1MC5 LINE L1 -189 7772 7630 234 212 0 61 chr3 122475272 122475338 -105049240 - L1MC4a LINE L1 -1131 6677 6616 339 246 112 0 chr3 122475827 122475961 -105048617 - L1MC4a LINE L1 -1777 6031 5883 232 37 0 0 chr3 122476003 122476030 -105048548 - L1MC4a LINE L1 -367 5799 5773 186 297 29 80 chr3 122476300 122476438 -105048140 - L2 LINE L2 -328 2985 2855 328 364 23 15 chr3 122478134 122478266 -105046312 + MER91A DNA MER1_type 1 133 -63 1841 159 7 10 chr3 122479915 122480217 -105044361 + AluSx SINE Alu 1 301 -11 231 88 0 0 chr3 122480546 122480580 -105043998 + (T)n Simple_repeat Simple_repeat 1 34 0 302 312 129 18 chr3 122480844 122481014 -105043564 + MER5A DNA MER1_type 1 189 0 1874 150 84 31 chr3 122481211 122481531 -105043047 - MER1B DNA MER1_type 0 337 1 567 249 32 13 chr3 122481829 122481998 -105042580 - MER20B DNA MER1_type -23 196 16 261 331 71 47 chr3 122482004 122482300 -105042278 + L2 LINE L2 2661 2963 -351 185 191 95 0 chr3 122482350 122482392 -105042186 - L2 LINE L2 -199 3073 3028 1839 158 35 133 chr3 122482893 122483411 -105041167 + MLT1C LTR MaLR 1 467 0 722 280 106 28 chr3 122484924 122485245 -105039333 + MLT1J2 LTR MaLR 71 416 -34 2063 102 57 3 chr3 122485473 122485756 -105038822 + AluSg SINE Alu 1 298 -12 1903 188 23 36 chr3 122486067 122486460 -105038118 + MLT1B LTR MaLR 3 390 0 514 216 27 61 chr3 122487375 122487523 -105037055 + MER58B DNA MER1_type 198 340 -1 205 274 59 0 chr3 122488006 122488057 -105036521 + L2 LINE L2 3259 3312 -1 194 287 137 67 chr3 122489426 122489635 -105034943 - MIR SINE MIR -50 212 2 25 0 0 0 chr3 122489747 122489772 -105034806 + AT_rich Low_complexity Low_complexity 1 25 0 255 321 205 5 chr3 122490710 122490900 -105033678 + L3 LINE CR1 979 1206 -371 236 400 11 0 chr3 122490958 122491053 -105033525 + L3 LINE CR1 1410 1505 -72 22 0 0 0 chr3 122491294 122491316 -105033262 + AT_rich Low_complexity Low_complexity 1 22 0 349 143 0 48 chr3 122492693 122492756 -105031822 - L2 LINE L2 0 3313 3254 420 269 248 0 chr3 122492756 122492901 -105031677 - MER5A DNA MER1_type 0 189 9 263 235 39 0 chr3 122492911 122492962 -105031616 - L2 LINE L2 -54 3218 3166 308 196 255 0 chr3 122493000 122493102 -105031476 + MIR SINE MIR 109 236 -26 181 219 171 0 chr3 122493072 122493113 -105031465 + L2 LINE L2 3252 3299 -14 * 278 321 132 6 chr3 122493461 122493620 -105030958 - MER91B DNA MER1_type -11 179 1 379 216 0 57 chr3 122494216 122494304 -105030274 + MER5B DNA MER1_type 2 84 -94 * 847 168 78 6 chr3 122494301 122494468 -105030110 + MER5A DNA MER1_type 11 189 0 500 295 63 5 chr3 122494585 122494820 -105029758 + L1ME LINE L1 5523 5734 -387 470 286 147 13 chr3 122494919 122495143 -105029435 + MIR SINE MIR 4 257 -5 539 197 8 60 chr3 122497129 122497177 -105027401 + MER81 DNA DNA 3 52 -62 2756 103 19 5 chr3 122497177 122497547 -105027031 + THE1C LTR MaLR 1 375 0 539 197 8 60 chr3 122497547 122497615 -105026963 + MER81 DNA DNA 52 113 -1 932 171 19 67 chr3 122499950 122500160 -105024418 + MER3 DNA MER1_type 6 205 -4 257 273 104 26 chr3 122500281 122500358 -105024220 - MER91A DNA MER1_type -26 170 88 442 258 53 37 chr3 122500728 122500918 -105023660 - L2 LINE L2 -338 2976 2784 349 282 81 27 chr3 122500994 122501143 -105023435 + MIR SINE MIR 74 230 -32 329 311 121 21 chr3 122502205 122502395 -105022183 - MIR SINE MIR -1 261 53 257 208 19 19 chr3 122502693 122502746 -105021832 - MER2 DNA MER2_type -1 344 292 * 348 150 0 17 chr3 122502745 122502805 -105021773 - MER21B LTR ERV1 -138 725 667 384 125 0 0 chr3 122502832 122502896 -105021682 + (CA)n Simple_repeat Simple_repeat 2 65 0 3019 235 61 3 chr3 122502936 122503646 -105020932 - Charlie1a DNA MER1_type -696 759 9 953 94 16 0 chr3 122503673 122503801 -105020777 - AluSp/q SINE Alu -17 296 167 1876 121 40 7 chr3 122503804 122504077 -105020501 - AluSx SINE Alu -19 293 12 708 279 110 40 chr3 122505225 122505726 -105018852 - L2 LINE L2 -1 3312 2769 28 0 0 0 chr3 122505762 122505790 -105018788 + AT_rich Low_complexity Low_complexity 1 28 0 352 265 88 20 chr3 122506582 122506684 -105017894 + L2 LINE L2 3173 3281 -32 207 254 30 15 chr3 122506700 122506767 -105017811 + GA-rich Low_complexity Low_complexity 1 68 0 2195 108 3 0 chr3 122507243 122507530 -105017048 - AluSg SINE Alu -3 307 20 251 222 111 25 chr3 122507609 122507690 -105016888 - MIR SINE MIR -13 249 162 2074 92 65 9 chr3 122507987 122508312 -105016266 - MER61A LTR ERV1 0 343 1 520 217 9 9 chr3 122508710 122508816 -105015762 - MIR SINE MIR -117 145 40 208 260 82 14 chr3 122509893 122509966 -105014612 + MIR SINE MIR 46 123 -85 5987 217 91 29 chr3 122510751 122512284 -105012294 + MLT1A1-int LTR MaLR 107 1735 0 1509 177 81 29 chr3 122512284 122512628 -105011950 + MLT1A1 LTR MaLR 1 362 -3 302 0 26 0 chr3 122512628 122512666 -105011912 + (CA)n Simple_repeat Simple_repeat 2 40 0 * 312 27 0 0 chr3 122512665 122512702 -105011876 + (GA)n Simple_repeat Simple_repeat 2 38 0 222 258 172 21 chr3 122514007 122514100 -105010478 - MIR SINE MIR -116 146 40 349 291 77 22 chr3 122515062 122515244 -105009334 - MARNA DNA Mariner -256 330 139 198 306 16 0 chr3 122515490 122515552 -105009026 - MIR SINE MIR -17 245 183 974 121 48 0 chr3 122516002 122516168 -105008410 + L1MA4 LINE L1 6123 6296 -4 1916 129 62 39 chr3 122516309 122516665 -105007913 + THE1B LTR MaLR 1 364 0 11489 97 10 8 chr3 122516666 122517084 -105007494 + THE1B-int LTR MaLR 3 419 -1161 1729 157 7 4 chr3 122517084 122517385 -105007193 - AluSx SINE Alu 0 302 1 11489 97 10 8 chr3 122517385 122518539 -105006039 + THE1B-int LTR MaLR 419 1580 0 2243 107 48 34 chr3 122518541 122518895 -105005683 + THE1B LTR MaLR 3 361 -3 53 81 0 0 chr3 122519082 122519205 -105005373 + AT_rich Low_complexity Low_complexity 1 123 0 2123 113 24 0 chr3 122519218 122519509 -105005069 - AluSp SINE Alu -15 298 1 25 75 0 0 chr3 122519554 122519607 -105004971 + AT_rich Low_complexity Low_complexity 1 53 0 531 268 110 38 chr3 122519862 122520324 -105004254 - L1ME LINE L1 -575 5546 5038 2063 132 26 19 chr3 122520334 122520712 -105003866 - L1MB1 LINE L1 -5 6163 5783 276 186 0 0 chr3 122520714 122520773 -105003805 + (TA)n Simple_repeat Simple_repeat 2 60 0 209 59 59 0 chr3 122520832 122520866 -105003712 + (TATATG)n Simple_repeat Simple_repeat 3 38 0 * 225 0 0 0 chr3 122520865 122520890 -105003688 + (CA)n Simple_repeat Simple_repeat 2 26 0 446 167 0 0 chr3 122520891 122520969 -105003609 - L1MB1 LINE L1 -388 5780 5703 354 291 105 33 chr3 122520969 122521179 -105003399 - L1ME LINE L1 -1101 5045 4821 1977 84 0 0 chr3 122521579 122521818 -105002760 - AluSc SINE Alu -24 285 47 21 36 0 0 chr3 122522211 122522239 -105002339 + AT_rich Low_complexity Low_complexity 1 28 0 681 314 158 18 chr3 122522904 122523290 -105001288 - L3 LINE CR1 -3 1574 1135 1928 166 15 3 chr3 122523541 122523872 -105000706 + MLT1A1 LTR MaLR 31 365 0 218 196 0 20 chr3 122523886 122523937 -105000641 + (TG)n Simple_repeat Simple_repeat 2 51 0 693 222 111 30 chr3 122525885 122526083 -104998495 - MER58C DNA MER1_type -1 214 1 527 256 12 60 chr3 122526159 122526327 -104998251 - MER96 DNA MER1_type? -13 162 3 239 295 9 0 chr3 122526346 122526451 -104998127 + L1MEd LINE L1 700 805 -5314 249 315 21 63 chr3 122527558 122527714 -104996864 - MIR SINE MIR -70 138 4 1807 146 0 48 chr3 122529159 122529453 -104995125 + AluSx SINE Alu 6 285 -27 418 234 281 41 chr3 122531182 122531549 -104993029 - LTR16A1 LTR ERVL 0 457 3 264 271 42 0 chr3 122531827 122531923 -104992655 + L1ME LINE L1 5520 5619 -502 699 149 17 121 chr3 122532053 122532227 -104992351 - AluJb SINE Alu -156 156 1 298 286 29 9 chr3 122532366 122532471 -104992107 + GA-rich Low_complexity Low_complexity 3 109 0 616 320 81 43 chr3 122533542 122534141 -104990437 - L2 LINE L2 -2 3311 2690 352 253 21 0 chr3 122534148 122534243 -104990335 + MER58 DNA MER1_type 12 108 -107 2109 116 31 0 chr3 122534253 122534547 -104990031 + AluSx SINE Alu 5 307 -5 502 244 17 47 chr3 122534594 122534766 -104989812 - MER58A DNA MER1_type 0 167 1 213 339 0 45 chr3 122534768 122534880 -104989698 - L2 LINE L2 -731 2583 2477 2273 202 53 2 chr3 122535041 122535535 -104989043 + LTR53 LTR ERVL 1 519 0 2276 117 0 0 chr3 122536564 122536862 -104987716 - AluSx SINE Alu -14 298 1 437 236 32 6 chr3 122539966 122540123 -104984455 + GA-rich Low_complexity Low_complexity 3 163 0 576 191 23 0 chr3 122540251 122540359 -104984219 + MER5A DNA MER1_type 4 114 -75 1712 174 129 8 chr3 122540384 122540786 -104983792 + MER31B LTR ERV1 1 451 -15 264 253 0 116 chr3 122540851 122540946 -104983632 + MIR SINE MIR 57 140 -122 2314 104 0 3 chr3 122541966 122542265 -104982313 - AluSx SINE Alu -14 298 1 285 268 89 24 chr3 122542293 122542416 -104982162 + MIR SINE MIR 125 255 -7 345 270 85 7 chr3 122542463 122542604 -104981974 + MIR SINE MIR 61 212 -50 22 0 0 0 chr3 122542633 122542655 -104981923 + AT_rich Low_complexity Low_complexity 1 22 0 389 252 85 7 chr3 122542805 122542948 -104981630 + MER20B DNA MER1_type 58 214 -5 261 304 0 0 chr3 122542974 122543043 -104981535 - MIR SINE MIR -85 123 55 242 348 46 0 chr3 122543530 122543627 -104980951 + MIR SINE MIR 34 146 -62 893 120 23 0 chr3 122543768 122543901 -104980677 - AluJo SINE Alu -176 136 1 308 306 38 15 chr3 122544119 122544380 -104980198 - L1ME3 LINE L1 -215 5947 5681 236 164 91 18 chr3 122544438 122544493 -104980085 - MER5C DNA MER1_type -264 60 2 326 244 115 10 chr3 122544537 122544666 -104979912 - L1ME3 LINE L1 -564 5600 5461 311 189 63 98 chr3 122544667 122544810 -104979768 - L1ME3 LINE L1 -2061 4085 3948 349 230 0 0 chr3 122545073 122545147 -104979431 - L1ME3 LINE L1 -2982 3164 3091 6397 144 59 9 chr3 122545148 122547434 -104977144 - L1MA9 LINE L1 0 7731 5340 2507 253 55 28 chr3 122547444 122549289 -104975289 - L1MA9 LINE L1 -3709 3856 2049 1553 238 38 60 chr3 122549380 122550024 -104974554 - L1M3e LINE L1 -5003 2027 392 404 311 75 54 chr3 122550039 122550704 -104973874 - L1MEd LINE L1 -5110 1444 766 180 0 0 0 chr3 122551823 122551843 -104972735 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 1835 32 5 0 chr3 122551843 122552060 -104972518 - L1PA3 LINE L1 -5 6150 5933 419 297 91 42 chr3 122552079 122552244 -104972334 - MER5B DNA MER1_type -5 173 1 21 36 0 0 chr3 122552703 122552731 -104971847 + AT_rich Low_complexity Low_complexity 1 28 0 333 264 23 11 chr3 122552822 122552909 -104971669 - MER5A DNA MER1_type 0 189 102 * 334 269 26 13 chr3 122552848 122552926 -104971652 + MER5A DNA MER1_type 39 117 -72 29 47 0 0 chr3 122553218 122553261 -104971317 + AT_rich Low_complexity Low_complexity 1 43 0 731 235 167 4 chr3 122553757 122554008 -104970570 - L1MEd LINE L1 -5753 292 1 1410 107 45 16 chr3 122555428 122555670 -104968908 + Tigger4(Zombi) DNA MER2_type 2157 2405 -326 1836 115 59 0 chr3 122555692 122555997 -104968581 - Tigger4(Zombi) DNA MER2_type -874 1857 1535 287 109 0 0 chr3 122555995 122556041 -104968537 + Tigger4(Zombi) DNA MER2_type 2403 2448 -283 * 2379 95 3 0 chr3 122556041 122556346 -104968232 + AluSg SINE Alu 1 306 -4 437 235 35 0 chr3 122556346 122556431 -104968147 + AluJo/F(R)AM SINE Alu 134 221 -91 1228 49 0 22 chr3 122556516 122556699 -104967879 + (TA)n Simple_repeat Simple_repeat 2 180 0 197 295 82 0 chr3 122557230 122557291 -104967287 - MIR SINE MIR -95 113 48 234 236 110 24 chr3 122559928 122560055 -104964523 + L1ME4a LINE L1 5743 5880 -1928 394 219 75 44 chr3 122560140 122560300 -104964278 + L1ME4a LINE L1 5955 6119 -2 260 232 54 0 chr3 122560565 122560621 -104963957 + MIR SINE MIR 102 160 -102 24 0 0 0 chr3 122564314 122564338 -104960240 + AT_rich Low_complexity Low_complexity 1 24 0 1093 190 13 95 chr3 122565181 122565497 -104959081 + MLT1D LTR MaLR 1 290 -215 572 164 15 72 chr3 122565497 122565692 -104958886 - MER67C LTR ERV1 0 710 527 1632 137 110 57 chr3 122566402 122566787 -104957791 + LTR46 LTR ERV1 1 364 -96 288 0 0 0 chr3 122566787 122566819 -104957759 + (TTTTC)n Simple_repeat Simple_repeat 2 33 0 473 49 0 0 chr3 122566822 122566883 -104957695 - L1PA5 LINE L1 -16 6138 6078 1632 137 110 57 chr3 122566883 122566930 -104957648 + LTR46 LTR ERV1 365 460 0 1239 102 28 0 chr3 122567715 122567891 -104956687 + AluSg/x SINE Alu 129 309 -3 1952 135 85 40 chr3 122567893 122568079 -104956499 + L1MA4 LINE L1 5595 5771 -529 216 0 0 0 chr3 122568079 122568103 -104956475 + (TG)n Simple_repeat Simple_repeat 2 25 0 * 324 67 50 0 chr3 122568102 122568162 -104956416 + (TA)n Simple_repeat Simple_repeat 2 64 0 1952 135 85 40 chr3 122568103 122568420 -104956158 + L1MA4 LINE L1 5771 6059 -241 448 169 0 0 chr3 122569004 122569081 -104955497 + AluJb SINE Alu 60 136 -176 2120 119 7 0 chr3 122569082 122569375 -104955203 + AluSx SINE Alu 2 296 -16 1484 148 61 0 chr3 122569377 122569654 -104954924 + Tigger3(Golem) DNA MER2_type 2579 2872 -157 720 233 35 92 chr3 122569656 122570060 -104954518 + MSTB1 LTR MaLR 2 382 -50 2976 95 29 27 chr3 122570482 122570670 -104953908 + L1PA11 LINE L1 5642 5828 -346 2286 95 3 3 chr3 122570670 122570966 -104953612 + AluSc SINE Alu 1 296 -13 2976 95 29 27 chr3 122570966 122571261 -104953317 + L1PA11 LINE L1 5828 6126 -48 1412 144 177 14 chr3 122571287 122571655 -104952923 + L1MC2 LINE L1 5803 6230 -114 297 261 149 18 chr3 122571931 122572153 -104952425 - L1MC4a LINE L1 -1883 5925 5675 375 289 70 63 chr3 122572287 122572588 -104951990 - L1MC4a LINE L1 -761 5385 5083 364 279 41 101 chr3 122573099 122573318 -104951260 - L1MC4a LINE L1 -2065 4081 3876 1141 272 71 14 chr3 122573329 122573697 -104950881 - MLT1I LTR MaLR -2 407 19 411 340 96 33 chr3 122573707 122574381 -104950197 - L1MC4a LINE L1 -2291 3855 3139 280 139 167 0 chr3 122574558 122574630 -104949948 - L1ME3A LINE L1 -222 5948 5865 450 270 159 37 chr3 122574645 122574702 -104949876 - L1M4 LINE L1 -1780 4366 4317 2158 173 25 20 chr3 122574702 122575096 -104949482 + MSTD LTR MaLR 1 396 0 450 270 159 37 chr3 122575096 122575446 -104949132 - L1M4 LINE L1 -1829 4317 3909 696 274 111 33 chr3 122575479 122575887 -104948691 + ERVL LTR ERVL 4808 5257 -228 1089 211 88 85 chr3 122576123 122576487 -104948091 - MLT1A1 LTR MaLR 0 365 1 1919 145 11 0 chr3 122577553 122577862 -104946716 - AluSx SINE Alu 0 312 1 929 206 20 75 chr3 122578194 122578274 -104946304 - MER5A DNA MER1_type -1 188 105 2135 179 6 3 chr3 122578274 122578638 -104945940 + MLT1A1 LTR MaLR 1 365 0 929 206 20 75 chr3 122578638 122578756 -104945822 - MER5A DNA MER1_type -84 105 1 1620 175 7 53 chr3 122578960 122579263 -104945315 - AluJb SINE Alu -23 289 1 297 380 44 38 chr3 122580412 122580570 -104944008 - MIR3 SINE MIR -49 159 1 21 71 0 0 chr3 122580709 122580751 -104943827 + AT_rich Low_complexity Low_complexity 1 42 0 1813 213 35 83 chr3 122581154 122581698 -104942880 - MLT2B1 LTR ERVL -2 518 1 200 220 34 17 chr3 122581919 122581978 -104942600 + MIR SINE MIR 84 143 -119 1674 84 13 9 chr3 122582015 122582294 -104942284 - AluY SINE Alu 0 334 55 23 0 0 0 chr3 122582600 122582623 -104941955 + AT_rich Low_complexity Low_complexity 1 23 0 2976 242 66 30 chr3 122582919 122583102 -104941476 - L1MEc LINE L1 -5405 991 816 2412 134 50 2 chr3 122583102 122583506 -104941072 - L1MC1 LINE L1 -18 6315 5893 2976 242 66 30 chr3 122583506 122584246 -104940332 - L1MEc LINE L1 -5580 816 35 196 157 129 71 chr3 122584885 122584955 -104939623 - L3b LINE CR1 -235 1348 1275 567 292 18 23 chr3 122585036 122585207 -104939371 + MIR SINE MIR 10 179 -83 598 317 85 5 chr3 122585587 122585672 -104938906 - MIR SINE MIR -13 249 172 802 221 136 39 chr3 122585672 122586003 -104938575 + MLT1A1 LTR MaLR 1 363 -2 598 317 85 5 chr3 122586003 122586141 -104938437 - MIR SINE MIR -90 172 8 23 0 0 0 chr3 122586301 122586324 -104938254 + AT_rich Low_complexity Low_complexity 1 23 0 999 180 38 6 chr3 122586641 122586824 -104937754 + MER5A DNA MER1_type 1 189 0 211 292 77 0 chr3 122587279 122587344 -104937234 + L2 LINE L2 3133 3202 -70 929 251 78 73 chr3 122588680 122589131 -104935447 + MLT1J LTR MaLR 26 478 -33 21 0 0 0 chr3 122589359 122589380 -104935198 + AT_rich Low_complexity Low_complexity 1 21 0 735 286 71 51 chr3 122589397 122590052 -104934526 + L1ME4a LINE L1 5262 5928 -193 21 36 0 0 chr3 122590296 122590324 -104934254 + AT_rich Low_complexity Low_complexity 1 28 0 312 122 0 68 chr3 122590396 122590470 -104934108 - L1MA7 LINE L1 0 6291 6223 560 297 127 9 chr3 122592765 122592994 -104931584 + MIR SINE MIR 5 260 -2 200 333 42 42 chr3 122594322 122594466 -104930112 + MIR3 SINE MIR 57 200 -8 277 170 19 0 chr3 122594772 122594825 -104929753 + MIR SINE MIR 3 56 -206 482 326 119 39 chr3 122594899 122595621 -104928957 - L2 LINE L2 -85 3187 2404 336 344 47 0 chr3 122595612 122595740 -104928838 + MIR SINE MIR 110 243 -19 * 1141 82 0 0 chr3 122596076 122596211 -104928367 + AluSq/x SINE Alu 1 135 -177 2019 138 7 0 chr3 122596211 122596502 -104928076 + AluSq SINE Alu 1 293 -20 305 232 124 46 chr3 122596731 122596925 -104927653 - L2 LINE L2 -1290 2024 1816 205 323 0 0 chr3 122598126 122598188 -104926390 - MIR SINE MIR 0 262 201 21 57 0 0 chr3 122598838 122598873 -104925705 + AT_rich Low_complexity Low_complexity 1 35 0 239 322 44 11 chr3 122598873 122598963 -104925615 - L2 LINE L2 -796 2518 2426 249 295 126 0 chr3 122599295 122599390 -104925188 + L2 LINE L2 3203 3309 -4 652 198 0 0 chr3 122599554 122599665 -104924913 - MER81 DNA DNA 0 114 4 393 230 0 89 chr3 122600150 122600285 -104924293 - MER94 DNA DNA -2 132 10 267 322 59 23 chr3 122601798 122601939 -104922639 - MIR3 SINE MIR -47 161 15 1065 171 63 41 chr3 122602799 122603068 -104921510 + ORSL DNA AcHobo 1 275 0 389 289 18 54 chr3 122604765 122604931 -104919647 + MIR SINE MIR 47 206 -56 449 238 54 0 chr3 122605138 122605285 -104919293 + L1ME4a LINE L1 5963 6117 -4 279 311 89 37 chr3 122605326 122605461 -104919117 - MIR3 SINE MIR -63 145 4 340 257 68 74 chr3 122605689 122605837 -104918741 + MIR3 SINE MIR 3 149 -59 473 160 76 8 chr3 122606196 122606327 -104918251 - L1MA3 LINE L1 -66 6239 6100 2425 94 8 16 chr3 122606394 122606775 -104917803 + L1MA3 LINE L1 5453 5830 -474 703 147 0 0 chr3 122606777 122606879 -104917699 + FLAM_C SINE Alu 30 131 -12 1265 116 0 14 chr3 122606881 122607096 -104917482 + L1MA3 LINE L1 5816 6027 -278 * 3572 132 13 3 chr3 122607083 122607680 -104916898 - L1M1 LINE L1 -5207 2358 1756 22 35 0 0 chr3 122608178 122608207 -104916371 + AT_rich Low_complexity Low_complexity 1 29 0 203 183 34 92 chr3 122608519 122608637 -104915941 - L2 LINE L2 0 3272 3174 414 262 159 1 chr3 122608664 122608808 -104915770 + MIR SINE MIR 34 195 -65 32297 48 5 3 chr3 122608843 122613144 -104911434 + L1P LINE L1 1 4310 -1836 2908 225 81 28 chr3 122613248 122614369 -104910209 - L1MDb LINE L1 -4369 2171 991 397 318 44 88 chr3 122614417 122614724 -104909854 - L1MDb LINE L1 -5555 985 404 726 283 113 11 chr3 122615048 122615411 -104909167 - L1MDb LINE L1 -6123 417 81 185 176 0 0 chr3 122615521 122615555 -104909023 + L2 LINE L2 3273 3306 -7 2443 83 3 0 chr3 122615801 122616103 -104908475 - AluSp SINE Alu -10 303 1 7505 35 2 2 chr3 122617729 122619419 -104905159 - L1PA4 LINE L1 0 6155 4466 349 218 15 90 chr3 122619539 122619672 -104904906 - MER94 DNA DNA -2 132 10 238 325 60 23 chr3 122621182 122621323 -104903255 - MIR3 SINE MIR -47 161 15 942 173 62 52 chr3 122622183 122622455 -104902123 + ORSL DNA AcHobo 1 275 0 750 168 6 102 chr3 122623319 122623339 -104901239 - AluJo SINE Alu -159 153 133 2376 95 3 0 chr3 122623339 122623644 -104900934 - AluSg SINE Alu -4 306 1 750 168 6 102 chr3 122623644 122623790 -104900788 - AluJo SINE Alu -179 133 3 26 30 0 0 chr3 122624728 122624761 -104899817 + AT_rich Low_complexity Low_complexity 1 33 0 1740 161 15 7 chr3 122624832 122625106 -104899472 + AluJb SINE Alu 5 280 -32 183 42 0 0 chr3 122625111 122625135 -104899443 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 217 306 161 20 chr3 122625360 122625559 -104899019 - L2 LINE L2 -1274 2040 1814 3923 173 17 6 chr3 122626200 122627051 -104897527 - L1MB7 LINE L1 -141 6043 5181 210 250 0 73 chr3 122627777 122627845 -104896733 - L2 LINE L2 0 3313 3251 527 286 138 14 chr3 122628890 122629100 -104895478 + MIR SINE MIR 15 250 -12 1320 190 124 42 chr3 122629287 122629713 -104894865 - MLT1C LTR MaLR 0 467 7 525 201 17 101 chr3 122630383 122630562 -104894016 + MIR SINE MIR 98 261 -1 210 372 41 14 chr3 122632027 122632172 -104892406 + L2 LINE L2 2916 3064 -208 2300 72 13 0 chr3 122633210 122633514 -104891064 - AluY SINE Alu -3 308 1 24 0 0 0 chr3 122634782 122634806 -104889772 + AT_rich Low_complexity Low_complexity 1 24 0 28 71 0 0 chr3 122634896 122634952 -104889626 + AT_rich Low_complexity Low_complexity 1 56 0 431 225 11 78 chr3 122635525 122635598 -104888980 + GA-rich Low_complexity Low_complexity 3 79 -101 1703 205 3 0 chr3 122635598 122635891 -104888687 + AluJo SINE Alu 1 294 -18 431 225 11 78 chr3 122635891 122636008 -104888570 + GA-rich Low_complexity Low_complexity 79 180 0 230 204 37 0 chr3 122636059 122636113 -104888465 + L1MC4 LINE L1 6646 6701 -1341 213 271 0 0 chr3 122636118 122636166 -104888412 + (TG)n Simple_repeat Simple_repeat 1 48 0 467 320 39 0 chr3 122636479 122636657 -104887921 + L2 LINE L2 2685 2869 -445 583 248 8 0 chr3 122636718 122636847 -104887731 + L2 LINE L2 3183 3312 -1 291 298 61 18 chr3 122636864 122636982 -104887596 - MIR SINE MIR -63 145 30 255 173 0 0 chr3 122637046 122637098 -104887480 + T-rich Low_complexity Low_complexity 1 52 0 371 182 9 27 chr3 122637315 122637425 -104887153 + CT-rich Low_complexity Low_complexity 1 108 0 1843 166 10 13 chr3 122637425 122637727 -104886851 - AluJo SINE Alu -11 301 1 219 297 0 16 chr3 122637970 122638034 -104886544 + MIR3 SINE MIR 92 154 -54 258 56 0 0 chr3 122638156 122638192 -104886386 + (TG)n Simple_repeat Simple_repeat 2 37 0 919 136 8 0 chr3 122638303 122638435 -104886143 - AluSq/x SINE Alu -179 133 1 1190 269 55 63 chr3 122639035 122639204 -104885374 - L2 LINE L2 0 3313 3144 2035 159 0 0 chr3 122639204 122639505 -104885073 + AluSx SINE Alu 1 301 -11 1190 269 55 63 chr3 122639505 122639911 -104884667 - L2 LINE L2 -169 3144 2740 1387 135 40 19 chr3 122641168 122641780 -104882798 + L1MA8 LINE L1 5197 5937 -354 1995 169 0 0 chr3 122641780 122642081 -104882497 + AluJo SINE Alu 1 301 -11 1387 135 40 19 chr3 122642081 122642441 -104882137 + L1MA8 LINE L1 5937 6288 -3 256 317 37 12 chr3 122642552 122642713 -104881865 - L1MA10 LINE L1 0 6334 6170 1057 229 57 30 chr3 122642721 122643053 -104881525 - L1ME1 LINE L1 -141 6025 5685 193 68 45 23 chr3 122643556 122643600 -104880978 + T-rich Low_complexity Low_complexity 4 48 0 543 226 61 11 chr3 122644488 122644669 -104879909 - L1ME1 LINE L1 -413 5708 5519 2263 115 0 3 chr3 122645609 122645922 -104878656 + AluSx SINE Alu 1 312 0 4392 156 44 19 chr3 122646279 122647164 -104877414 - L1MB3 LINE L1 -2 6181 5283 2017 132 10 26 chr3 122647166 122647476 -104877102 - AluSx SINE Alu -7 305 1 581 283 159 21 chr3 122647483 122647766 -104876812 - L2 LINE L2 -11 3302 2981 353 296 7 14 chr3 122647955 122648097 -104876481 + L2 LINE L2 2044 2184 -1130 861 259 132 70 chr3 122648099 122648549 -104876029 + L2 LINE L2 2328 2749 -564 532 104 0 0 chr3 122648549 122648626 -104875952 + MADE1 DNA Mariner 1 77 -3 861 259 132 70 chr3 122648626 122649086 -104875492 + L2 LINE L2 2749 3308 -5 294 230 140 11 chr3 122649169 122649347 -104875231 - L1ME4a LINE L1 -188 5933 5733 249 328 108 26 chr3 122649517 122649749 -104874829 + L2 LINE L2 2233 2483 -831 298 335 77 42 chr3 122649985 122650441 -104874137 + L2 LINE L2 2842 3313 0 703 218 29 17 chr3 122650720 122650894 -104873684 + MER5B DNA MER1_type 1 176 -2 333 275 154 27 chr3 122650909 122651058 -104873520 + MER5A DNA MER1_type 20 187 -2 237 240 0 0 chr3 122651819 122651869 -104872709 + MIR3 SINE MIR 150 199 -9 3206 182 23 16 chr3 122652913 122653621 -104870957 - L1MB7 LINE L1 -30 6154 5442 226 289 36 12 chr3 122654889 122654972 -104869606 - MLT1J LTR MaLR -326 185 101 311 260 14 68 chr3 122655201 122655347 -104869231 - MIR SINE MIR -50 212 75 209 394 53 0 chr3 122655634 122655728 -104868850 + L2 LINE L2 3158 3256 -16 939 126 24 6 chr3 122655911 122656128 -104868450 + L1MA5 LINE L1 6125 6344 0 293 286 71 7 chr3 122656796 122656936 -104867642 - MER103 DNA DNA -3 163 15 249 33 0 0 chr3 122657278 122657308 -104867270 + (TA)n Simple_repeat Simple_repeat 1 30 0 2918 143 101 14 chr3 122657824 122658377 -104866201 - MER7C DNA MER2_type 0 602 2 253 143 51 71 chr3 122658536 122658634 -104865944 + L1MC5 LINE L1 7835 7930 -31 180 0 0 0 chr3 122658755 122658775 -104865803 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 523 81 0 0 chr3 122659289 122659363 -104865215 - Tigger3(Golem) DNA MER2_type -92 2937 2864 22 0 0 0 chr3 122659691 122659713 -104864865 + AT_rich Low_complexity Low_complexity 1 22 0 550 239 61 72 chr3 122659828 122660091 -104864487 + MER112 DNA MER1_type 1 260 0 22 0 0 0 chr3 122661977 122661999 -104862579 + AT_rich Low_complexity Low_complexity 1 22 0 198 296 56 0 chr3 122662530 122662584 -104861994 + L2 LINE L2 3213 3269 -3 26 74 0 0 chr3 122663507 122663561 -104861017 + AT_rich Low_complexity Low_complexity 1 54 0 2222 99 0 3 chr3 122663833 122664125 -104860453 - AluSc SINE Alu -18 291 1 321 248 80 18 chr3 122665114 122665227 -104859351 + L1ME3A LINE L1 5821 5940 -230 221 311 0 16 chr3 122665242 122665303 -104859275 + (CA)n Simple_repeat Simple_repeat 2 61 0 257 294 47 0 chr3 122665306 122665391 -104859187 + L1MC4 LINE L1 6615 6703 -1339 243 284 23 0 chr3 122665385 122665473 -104859105 - L1MC4 LINE L1 -1339 6703 6614 * 256 303 0 0 chr3 122665409 122665498 -104859080 + L1MC4 LINE L1 6614 6702 -1340 246 274 48 0 chr3 122665473 122665557 -104859021 - L1MC4 LINE L1 -1341 6701 6614 * 429 302 0 0 chr3 122665583 122665762 -104858816 + (TA)n Simple_repeat Simple_repeat 2 180 0 282 253 46 0 chr3 122665764 122665851 -104858727 - L1MC4 LINE L1 -1338 6704 6614 504 265 75 27 chr3 122665922 122666069 -104858509 + L1ME3A LINE L1 5987 6140 -30 186 333 133 0 chr3 122667051 122667156 -104857422 - L2 LINE L2 -462 2852 2734 2020 109 3 7 chr3 122667489 122667794 -104856784 + AluSx SINE Alu 1 304 0 199 222 16 79 chr3 122668416 122668479 -104856099 + L2 LINE L2 3199 3257 -15 24 53 0 0 chr3 122668773 122668811 -104855767 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr3 122669568 122669608 -104854970 + AT_rich Low_complexity Low_complexity 1 40 0 387 0 0 0 chr3 122670310 122670353 -104854225 + (CA)n Simple_repeat Simple_repeat 2 44 0 2026 106 10 7 chr3 122670511 122670804 -104853774 - AluSc SINE Alu -15 294 1 315 364 175 23 chr3 122673072 122673380 -104851198 + L2 LINE L2 2918 3272 0 617 197 43 0 chr3 122674462 122674579 -104849999 + MER3 DNA MER1_type 88 209 0 433 181 0 21 chr3 122674619 122674713 -104849865 + MER5A DNA MER1_type 9 100 -89 271 210 0 120 chr3 122676340 122676440 -104848138 + L2 LINE L2 3189 3276 -37 775 296 41 10 chr3 122676449 122676792 -104847786 + L1ME3 LINE L1 5470 5830 -332 826 209 78 13 chr3 122676896 122677126 -104847452 + L1MEc LINE L1 1878 2122 -4274 1966 230 142 35 chr3 122677127 122677431 -104847147 + L1MEc LINE L1 2179 2449 -3766 2277 98 0 3 chr3 122677431 122677727 -104846851 + AluSc SINE Alu 1 295 -14 1966 230 142 35 chr3 122677727 122678549 -104846029 + L1MEc LINE L1 2449 3386 -2829 1058 236 99 16 chr3 122678548 122678862 -104845716 + L1ME LINE L1 257 596 -5474 * 547 231 41 8 chr3 122678866 122678987 -104845591 - L2 LINE L2 -18 3295 3171 385 374 78 40 chr3 122679176 122679550 -104845028 - L2 LINE L2 -400 2914 2527 2266 81 0 7 chr3 122679559 122679871 -104844707 + AluY SINE Alu 1 310 0 502 331 0 6 chr3 122679903 122680066 -104844512 - L2 LINE L2 -930 2384 2223 24 53 0 0 chr3 122681591 122681629 -104842949 + AT_rich Low_complexity Low_complexity 1 38 0 481 344 17 0 chr3 122682153 122682333 -104842245 - MIR SINE MIR -75 187 5 229 158 44 61 chr3 122682491 122682605 -104841973 + (TATAA)n Simple_repeat Simple_repeat 5 116 0 * 382 199 41 27 chr3 122682526 122682741 -104841837 + (TA)n Simple_repeat Simple_repeat 1 217 0 52 50 0 0 chr3 122685291 122685371 -104839207 + AT_rich Low_complexity Low_complexity 1 80 0 756 239 0 12 chr3 122686046 122686209 -104838369 + AluJo SINE Alu 122 282 -30 210 71 0 0 chr3 122686212 122686240 -104838338 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 457 232 99 34 chr3 122686437 122686780 -104837798 + HAL1 LINE L1 1111 1556 -951 1384 145 7 91 chr3 122686784 122686885 -104837693 + AluJo SINE Alu 42 150 -162 216 0 0 0 chr3 122686885 122686909 -104837669 + (TAA)n Simple_repeat Simple_repeat 2 25 0 1384 145 7 91 chr3 122686909 122687083 -104837495 + AluJo SINE Alu 150 294 -18 893 234 27 43 chr3 122687085 122687342 -104837236 + HAL1 LINE L1 1586 1838 -669 218 191 0 0 chr3 122687634 122687676 -104836902 + GA-rich Low_complexity Low_complexity 1 42 0 573 15 0 0 chr3 122687676 122687742 -104836836 + (TG)n Simple_repeat Simple_repeat 2 67 0 247 262 133 47 chr3 122687743 122687999 -104836579 + HAL1 LINE L1 2230 2507 0 759 267 9 13 chr3 122688195 122688427 -104836151 - L1M4 LINE L1 -3560 2586 2356 334 237 0 35 chr3 122688432 122688546 -104836032 + L1M4 LINE L1 2248 2357 -3789 399 299 142 15 chr3 122688561 122688876 -104835702 + L1ME4a LINE L1 5454 5807 -314 30 27 0 0 chr3 122688910 122688947 -104835631 + AT_rich Low_complexity Low_complexity 1 37 0 255 264 47 31 chr3 122689131 122689260 -104835318 + L1ME4a LINE L1 5974 6104 -17 434 324 64 35 chr3 122689793 122690136 -104834442 + HERV16 LTR ERVL 117 469 -4527 2244 89 0 0 chr3 122690573 122690864 -104833714 + AluSc SINE Alu 1 291 -18 351 327 59 63 chr3 122691165 122691419 -104833159 + HERV16 LTR ERVL 1193 1445 -4319 554 286 45 23 chr3 122691467 122691687 -104832891 + HERV16 LTR ERVL 2528 2752 -2733 511 309 131 20 chr3 122691838 122692136 -104832442 + L2 LINE L2 2983 3313 0 315 337 72 44 chr3 122692383 122692564 -104832014 - MIR SINE MIR -75 187 2 25 0 0 0 chr3 122693077 122693102 -104831476 + AT_rich Low_complexity Low_complexity 1 25 0 594 217 9 0 chr3 122693182 122693297 -104831281 + FLAM_A SINE Alu 5 120 -13 21 0 0 0 chr3 122693733 122693754 -104830824 + AT_rich Low_complexity Low_complexity 1 21 0 6426 162 66 6 chr3 122694540 122695678 -104828900 + L1M1 LINE L1 22 1227 -6338 550 245 34 7 chr3 122695885 122696032 -104828546 + L1MD2 LINE L1 5983 6133 -226 2221 223 43 31 chr3 122696040 122696595 -104827983 + MER68 LTR ERV1 1 562 0 280 211 9 101 chr3 122696603 122696712 -104827866 + L1MD2 LINE L1 6196 6294 -65 1727 194 101 5 chr3 122696722 122697139 -104827439 + MLT2B1 LTR ERVL 1 457 -63 187 106 64 0 chr3 122697160 122697207 -104827371 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 396 88 0 0 chr3 122697215 122697272 -104827306 + (CA)n Simple_repeat Simple_repeat 2 58 0 2371 94 0 0 chr3 122697450 122697758 -104826820 - AluSg SINE Alu -2 308 1 448 246 337 0 chr3 122697991 122698178 -104826400 + MIR SINE MIR 13 262 0 2289 146 33 12 chr3 122699136 122699561 -104825017 - L1MA8 LINE L1 0 6291 5858 2175 95 0 0 chr3 122700230 122700544 -104824034 - AluY SINE Alu 0 314 1 451 310 239 0 chr3 122700928 122701154 -104823424 + L2 LINE L2 2001 2280 -1034 1056 288 50 48 chr3 122701527 122702010 -104822568 - LTR16C LTR ERVL -7 484 1 1618 261 89 16 chr3 122702207 122703008 -104821570 - L1M4 LINE L1 -2799 3347 2489 243 280 99 62 chr3 122703035 122703389 -104821189 - L1M4 LINE L1 -1302 4844 4478 287 305 34 34 chr3 122703440 122703558 -104821020 - MER5A DNA MER1_type -3 186 69 1313 213 57 27 chr3 122703662 122703996 -104820582 - MER2 DNA MER2_type 0 344 1 2128 115 7 0 chr3 122704550 122704845 -104819733 - AluSx SINE Alu -15 297 1 242 222 19 74 chr3 122706377 122706485 -104818093 + L1MC4 LINE L1 7935 8036 -6 1623 192 0 14 chr3 122706691 122706972 -104817606 - AluJb SINE Alu -33 279 3 2107 149 81 8 chr3 122707325 122707707 -104816871 + MSTA LTR MaLR 19 428 0 347 366 59 13 chr3 122709617 122709770 -104814808 + MER5B DNA MER1_type 1 160 -18 406 212 68 34 chr3 122710335 122710453 -104814125 + MIR SINE MIR 116 237 -25 2241 128 12 18 chr3 122710748 122711084 -104813494 + MER1B DNA MER1_type 3 336 -3 649 314 71 12 chr3 122711379 122711794 -104812784 - L1ME4a LINE L1 -180 5941 5490 1853 179 140 10 chr3 122714437 122714845 -104809733 - LOR1b LTR ERV1 0 461 1 535 252 22 7 chr3 122715114 122715249 -104809329 - MER20 DNA MER1_type 0 219 83 1785 163 15 9 chr3 122715431 122715756 -104808822 + L1PA13 LINE L1 5804 6130 -33 228 286 0 0 chr3 122715782 122715838 -104808740 + GA-rich Low_complexity Low_complexity 1 56 0 254 260 149 8 chr3 122715889 122716124 -104808454 + L1M4 LINE L1 3071 3338 -2808 1662 157 48 3 chr3 122716264 122716557 -104808021 + AluJb SINE Alu 4 309 -3 855 245 37 0 chr3 122716857 122717045 -104807533 + MIR SINE MIR 68 262 0 21 57 0 0 chr3 122717080 122717115 -104807463 + AT_rich Low_complexity Low_complexity 1 35 0 1790 144 3 39 chr3 122717500 122717812 -104806766 - AluJb SINE Alu -10 302 2 297 372 96 13 chr3 122717846 122718147 -104806431 + L2 LINE L2 2416 2741 -573 1551 156 71 3 chr3 122718227 122718509 -104806069 - AluJb SINE Alu -11 301 1 821 280 163 26 chr3 122718960 122719378 -104805200 + L2 LINE L2 2834 3308 -5 268 307 189 7 chr3 122719364 122719517 -104805061 - MIR SINE MIR -69 193 13 * 240 319 143 0 chr3 122719576 122719695 -104804883 + L2 LINE L2 3136 3271 -1 23 33 0 0 chr3 122721704 122721734 -104802844 + AT_rich Low_complexity Low_complexity 1 30 0 1991 106 17 3 chr3 122722152 122722445 -104802133 + AluSx SINE Alu 6 302 -10 278 214 51 41 chr3 122722578 122722676 -104801902 - L1ME3 LINE L1 0 6162 6064 1518 231 69 29 chr3 122722701 122723220 -104801358 - L1ME3 LINE L1 -89 6073 5458 727 221 28 0 chr3 122723525 122723670 -104800908 + MIR SINE MIR 114 262 0 255 152 0 0 chr3 122724304 122724350 -104800228 + (TG)n Simple_repeat Simple_repeat 1 46 0 239 304 37 110 chr3 122724743 122724934 -104799644 - L2 LINE L2 -199 3073 2897 965 196 55 5 chr3 122725556 122725755 -104798823 + MER3 DNA MER1_type 1 209 0 609 297 100 10 chr3 122725958 122726248 -104798330 - L1ME LINE L1 -297 5824 5509 2780 109 51 68 chr3 122726315 122726847 -104797731 - L1MA4A LINE L1 -4 6299 5777 247 189 451 0 chr3 122727644 122727766 -104796812 - MER104 DNA Tc2 -1 179 3 2026 106 10 7 chr3 122729301 122729594 -104794984 + AluSc SINE Alu 1 294 -15 333 0 0 0 chr3 122729752 122729789 -104794789 + (TG)n Simple_repeat Simple_repeat 2 38 0 26 50 0 0 chr3 122730491 122730531 -104794047 + AT_rich Low_complexity Low_complexity 1 40 0 24 53 0 0 chr3 122731288 122731326 -104793252 + AT_rich Low_complexity Low_complexity 1 38 0 199 222 16 79 chr3 122731620 122731683 -104792895 - L2 LINE L2 -15 3257 3199 2116 107 4 0 chr3 122732305 122732608 -104791970 - AluSx SINE Alu 0 304 1 186 333 133 0 chr3 122732941 122733046 -104791532 + L2 LINE L2 2734 2852 -462 482 272 75 27 chr3 122734026 122734173 -104790405 - L1ME3A LINE L1 -30 6140 5987 305 274 0 57 chr3 122734226 122734332 -104790246 + L1MC4 LINE L1 6605 6704 -1338 229 169 0 56 chr3 122734339 122734410 -104790168 + (TATATG)n Simple_repeat Simple_repeat 3 69 0 263 241 132 35 chr3 122734634 122734787 -104789791 + MIR SINE MIR 19 186 -64 243 61 0 0 chr3 122736688 122736721 -104787857 + (CA)n Simple_repeat Simple_repeat 2 34 0 504 257 146 15 chr3 122736747 122737008 -104787570 - L1ME3A LINE L1 -206 5915 5621 648 201 21 14 chr3 122738142 122738286 -104786292 - AluJb SINE Alu -153 159 15 604 226 61 22 chr3 122738760 122738941 -104785637 + L1MC4 LINE L1 7155 7342 -700 394 302 6 18 chr3 122739009 122739178 -104785400 + L1MEc LINE L1 1864 2030 -4366 564 269 42 5 chr3 122739191 122739407 -104785171 + L1MEc LINE L1 2257 2480 -3735 984 180 12 0 chr3 122739437 122739609 -104784969 + MER58B DNA MER1_type 168 341 0 26 30 0 0 chr3 122740226 122740259 -104784319 + AT_rich Low_complexity Low_complexity 1 33 0 607 224 48 7 chr3 122740617 122740764 -104783814 - MER3 DNA MER1_type -55 154 2 21 0 0 0 chr3 122741010 122741031 -104783547 + AT_rich Low_complexity Low_complexity 1 21 0 263 241 132 35 chr3 122742795 122742948 -104781630 + MIR SINE MIR 19 186 -64 1334 149 90 38 chr3 122743793 122744081 -104780497 + L1PA16 LINE L1 5864 6166 0 1970 151 10 3 chr3 122744122 122744427 -104780151 - AluJb SINE Alu -5 307 1 877 48 0 0 chr3 122744799 122744902 -104779676 + AluY SINE Alu 30 132 -179 252 0 0 0 chr3 122744902 122744930 -104779648 + (A)n Simple_repeat Simple_repeat 1 28 0 1769 146 0 4 chr3 122744931 122745206 -104779372 - AluSx SINE Alu -38 274 1 2953 201 12 26 chr3 122746423 122747004 -104777574 + LTR39 LTR ERV1 210 782 -1 369 215 0 103 chr3 122747436 122747543 -104777035 + MER46A DNA MER2_type 1 96 -140 342 267 38 0 chr3 122747555 122747660 -104776918 + L1ME LINE L1 5563 5671 -450 330 210 0 0 chr3 122747725 122747787 -104776791 + MER116 DNA Mariner 1 62 -18 434 259 28 9 chr3 122747814 122747922 -104776656 - L2 LINE L2 -5 3308 3199 439 328 133 63 chr3 122749455 122750466 -104774112 - L2 LINE L2 -19 3253 2164 25 31 0 0 chr3 122751007 122751039 -104773539 + AT_rich Low_complexity Low_complexity 1 32 0 1909 146 10 3 chr3 122751141 122751436 -104773142 - AluSx SINE Alu -14 298 2 187 292 15 15 chr3 122752298 122752363 -104772215 + L2 LINE L2 3171 3235 -78 1521 167 62 7 chr3 122752366 122752642 -104771936 + AluJb SINE Alu 1 291 -21 27 0 0 0 chr3 122753034 122753061 -104771517 + AT_rich Low_complexity Low_complexity 1 27 0 779 219 93 10 chr3 122753179 122753384 -104771194 - MER58A DNA MER1_type 0 224 3 302 313 37 7 chr3 122753702 122753941 -104770637 + MLT1K LTR MaLR 224 512 -76 22 80 0 0 chr3 122754586 122754636 -104769942 + AT_rich Low_complexity Low_complexity 1 50 0 1181 146 35 62 chr3 122754718 122754944 -104769634 - MER46A DNA MER2_type -16 220 1 365 338 32 0 chr3 122755148 122755271 -104769307 - MIR SINE MIR -65 143 26 1319 211 191 5 chr3 122755412 122755830 -104768748 + LTR54B LTR ERV1 1 496 -2 180 135 0 0 chr3 122757221 122757258 -104767320 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 425 196 9 218 chr3 122758044 122758269 -104766309 + MER5B DNA MER1_type 1 178 0 29 0 0 0 chr3 122759412 122759441 -104765137 + AT_rich Low_complexity Low_complexity 1 29 0 186 200 150 0 chr3 122759912 122759952 -104764626 + L2 LINE L2 3228 3273 -40 426 39 0 0 chr3 122760130 122760182 -104764396 + (TA)n Simple_repeat Simple_repeat 1 52 0 4557 132 161 6 chr3 122761398 122762455 -104762123 - Tigger3b DNA MER2_type 0 1231 2 648 276 206 0 chr3 122762673 122763028 -104761550 - L1ME LINE L1 -406 5764 5337 1417 235 68 16 chr3 122763072 122763557 -104761021 - L1ME LINE L1 -875 5271 4762 2023 251 78 1 chr3 122763616 122764297 -104760281 - L1ME LINE L1 -1778 4368 3636 1077 249 56 9 chr3 122764564 122764902 -104759676 - L1M4 LINE L1 -2157 3989 3636 44 35 0 0 chr3 122765008 122765066 -104759512 + AT_rich Low_complexity Low_complexity 1 58 0 407 297 0 26 chr3 122765486 122765641 -104758937 + L1ME3A LINE L1 4963 5113 -1033 904 244 131 11 chr3 122765663 122766155 -104758423 + L1ME3A LINE L1 5177 5723 -439 321 248 80 18 chr3 122766735 122766848 -104757730 + L1ME3A LINE L1 5821 5940 -230 260 323 0 0 chr3 122766863 122766925 -104757653 + (CA)n Simple_repeat Simple_repeat 2 63 0 265 253 0 63 chr3 122766928 122767023 -104757555 + L1MC4 LINE L1 6615 6703 -1339 * 282 279 0 0 chr3 122766995 122767081 -104757497 - L1MC4 LINE L1 -1341 6701 6616 267 267 47 0 chr3 122767093 122767179 -104757399 - L1MC4 LINE L1 -1339 6703 6614 273 274 63 11 chr3 122767182 122767277 -104757301 - L1MC4 LINE L1 -1340 6702 6603 399 171 122 81 chr3 122767511 122767634 -104756944 + MIR SINE MIR 125 252 -10 210 143 0 0 chr3 122767637 122767672 -104756906 + (CAT)n Simple_repeat Simple_repeat 2 36 0 345 192 212 98 chr3 122767813 122768016 -104756562 - L1MC4 LINE L1 -1884 5924 5699 1481 184 99 15 chr3 122768389 122768721 -104755857 - MLT1A1 LTR MaLR 0 365 6 279 304 184 13 chr3 122769920 122770078 -104754500 - MIR SINE MIR -29 233 49 298 206 10 62 chr3 122770423 122770520 -104754058 - Charlie7 DNA MER1_type -6 2606 2515 371 286 9 29 chr3 122770548 122770653 -104753925 - Charlie7 DNA MER1_type -2509 103 1 391 225 171 27 chr3 122771508 122771619 -104752959 + L2 LINE L2 3186 3312 -1 504 244 240 12 chr3 122771817 122772067 -104752511 + L2 LINE L2 2069 2375 -939 229 277 8 101 chr3 122772086 122772205 -104752373 + MLT1H LTR MaLR 426 533 -16 547 299 47 31 chr3 122772221 122772475 -104752103 + L2 LINE L2 3055 3312 -1 1694 164 14 4 chr3 122772821 122773096 -104751482 + AluJo SINE Alu 5 282 -30 207 0 0 0 chr3 122773104 122773127 -104751451 + (CAA)n Simple_repeat Simple_repeat 2 24 0 184 161 0 0 chr3 122773296 122773327 -104751251 + L2 LINE L2 3281 3311 -2 27120 20 1 0 chr3 122823509 122827416 -104697162 + L1HS LINE L1 2246 6155 0 216 86 0 0 chr3 122827420 122827455 -104697123 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 621 239 33 56 chr3 122827986 122828166 -104696412 - MER69A DNA AcHobo 0 177 2 448 299 24 0 chr3 122828710 122828837 -104695741 + MIR SINE MIR 120 249 -13 246 255 164 77 chr3 122829986 122830194 -104694384 - MLT1L LTR MaLR -166 449 224 1347 229 53 9 chr3 122830255 122830574 -104694004 - MER46C DNA MER2_type -4 334 2 1434 204 52 0 chr3 122830694 122830992 -104693586 + AluJo SINE Alu 1 312 0 216 302 208 0 chr3 122831299 122831405 -104693173 - L2 LINE L2 -8 3264 3137 206 152 0 22 chr3 122831412 122831458 -104693120 + (TA)n Simple_repeat Simple_repeat 2 46 0 237 225 125 0 chr3 122831458 122831538 -104693040 - L1MC4 LINE L1 -1339 6703 6614 252 214 0 0 chr3 122831558 122831614 -104692964 + (TATG)n Simple_repeat Simple_repeat 1 56 0 1379 299 110 44 chr3 122831614 122832054 -104692524 - L2 LINE L2 -158 3155 2745 1625 173 27 30 chr3 122832054 122832354 -104692224 - AluJo SINE Alu -13 299 1 1379 299 110 44 chr3 122832354 122832797 -104691781 - L2 LINE L2 -568 2745 2214 4190 173 61 18 chr3 122833054 122833911 -104690667 - MER97a DNA MER1_type 0 894 1 2270 105 0 7 chr3 122835541 122835845 -104688733 + AluSq SINE Alu 1 302 -11 35 24 0 0 chr3 122836315 122836357 -104688221 + AT_rich Low_complexity Low_complexity 1 42 0 6232 129 48 27 chr3 122836486 122836845 -104687733 - Tigger3b DNA MER2_type -1797 1231 881 2607 36 3 0 chr3 122836845 122837147 -104687431 + AluY SINE Alu 1 303 -8 6232 129 48 27 chr3 122837147 122837867 -104686711 - Tigger3b DNA MER2_type -2147 881 129 401 138 12 0 chr3 122837879 122837959 -104686619 + GA-rich Low_complexity Low_complexity 1 81 0 384 277 43 35 chr3 122838878 122839019 -104685559 + L2 LINE L2 3168 3309 -4 1368 161 21 8 chr3 122839525 122839761 -104684817 + MER66A LTR ERV1 1 239 -239 328 298 25 56 chr3 122840110 122840271 -104684307 - MIR3 SINE MIR -15 193 38 254 275 9 101 chr3 122841550 122841659 -104682919 + Charlie8 DNA MER1_type 44 142 -2275 367 275 158 17 chr3 122842163 122842283 -104682295 - L2 LINE L2 0 3272 3136 1787 177 62 6 chr3 122842421 122842760 -104681818 - MLT1A1 LTR MaLR -1 364 7 428 318 55 20 chr3 122843142 122843343 -104681235 - L2 LINE L2 -610 2704 2497 512 287 150 25 chr3 122843413 122843699 -104680879 - LTR16B LTR ERVL 0 464 143 2160 134 134 28 chr3 122843715 122844102 -104680476 - MSTA LTR MaLR 0 428 1 2293 100 3 0 chr3 122844188 122844487 -104680091 - AluSx SINE Alu -12 300 1 230 227 0 0 chr3 122844892 122844936 -104679642 + CT-rich Low_complexity Low_complexity 2 45 0 982 168 0 23 chr3 122845691 122845864 -104678714 - AluJo SINE Alu -2 310 142 2315 142 54 29 chr3 122845867 122846363 -104678215 + MLT2A2 LTR ERVL 1 532 -22 559 213 28 9 chr3 122846363 122846471 -104678107 - AluJo SINE Alu -149 163 54 2613 45 0 3 chr3 122846485 122846793 -104677785 - AluY SINE Alu -4 307 1 207 100 0 0 chr3 122846926 122846956 -104677622 + (TG)n Simple_repeat Simple_repeat 1 30 0 704 236 11 37 chr3 122847081 122847272 -104677306 + MER20 DNA MER1_type 33 218 -1 1500 96 0 0 chr3 122848981 122849168 -104675410 + AluSg1 SINE Alu 1 187 -122 1168 123 0 0 chr3 122849168 122849331 -104675247 + AluSg/x SINE Alu 143 305 -4 2214 216 108 51 chr3 122850049 122850735 -104673843 - MER50 LTR ERV1 0 734 10 955 103 209 91 chr3 122850992 122851245 -104673333 - LTR18B LTR ERVL -14 600 318 1037 210 11 0 chr3 122851249 122851435 -104673143 - LTR18B LTR ERVL -426 188 1 1702 266 40 11 chr3 122851701 122852253 -104672325 + L1MDb LINE L1 13 736 -5673 4178 130 8 12 chr3 122853096 122853115 -104671463 - MER41B LTR ERV1 0 635 617 2364 126 50 6 chr3 122853115 122853472 -104671106 + THE1C LTR MaLR 1 373 -2 4178 130 8 12 chr3 122853472 122854090 -104670488 - MER41B LTR ERV1 -18 617 1 28 0 0 0 chr3 122854529 122854557 -104670021 + AT_rich Low_complexity Low_complexity 1 28 0 450 343 41 0 chr3 122855497 122855669 -104668909 + ERVL LTR ERVL 3697 3875 -1889 899 308 42 16 chr3 122855745 122856053 -104668525 + ERVL LTR ERVL 4017 4332 -1322 502 346 27 0 chr3 122856086 122856274 -104668304 + ERVL LTR ERVL 4477 4669 -1095 412 146 0 0 chr3 122856431 122856486 -104668092 - Tigger3(Golem) DNA MER2_type -2973 56 2 350 258 28 52 chr3 122856487 122856700 -104667878 + L1MDb LINE L1 2390 2597 -3809 225 265 15 0 chr3 122856753 122856821 -104667757 + L1MDb LINE L1 2750 2818 -3588 233 192 247 0 chr3 122856823 122856896 -104667682 - L3 LINE CR1 -394 1183 1093 873 277 28 43 chr3 122857520 122857802 -104666776 + L1ME1 LINE L1 230 507 -6080 1885 225 21 27 chr3 122857819 122858194 -104666384 - L1M4 LINE L1 -780 5366 4993 2098 128 3 3 chr3 122858194 122858491 -104666087 - AluSq SINE Alu -16 297 1 1885 225 21 27 chr3 122858491 122858590 -104665988 - L1M4 LINE L1 -1153 4993 4895 846 258 7 63 chr3 122858574 122858706 -104665872 + L1ME1 LINE L1 3982 4120 -2286 * 1963 136 0 32 chr3 122858706 122859014 -104665564 + AluSx SINE Alu 1 298 -14 846 258 7 63 chr3 122859014 122859180 -104665398 + L1ME1 LINE L1 4120 4263 -2143 389 215 234 0 chr3 122859187 122859294 -104665284 + MER5A DNA MER1_type 57 188 -1 4833 220 78 21 chr3 122859361 122860016 -104664562 + L1ME1 LINE L1 4293 4909 -1517 2264 82 0 4 chr3 122860016 122860323 -104664255 + AluY SINE Alu 1 306 0 4833 220 78 21 chr3 122860323 122861685 -104662893 + L1ME1 LINE L1 4909 6417 -9 375 257 50 0 chr3 122862071 122862172 -104662406 + MIR SINE MIR 70 175 -87 621 218 32 96 chr3 122862362 122862550 -104662028 - MER5B DNA MER1_type -1 177 2 626 226 161 0 chr3 122862553 122862708 -104661870 - MER5A DNA MER1_type -1 188 9 187 263 203 53 chr3 122862729 122862862 -104661716 + MER5A DNA MER1_type 34 186 -3 208 231 0 39 chr3 122863773 122863825 -104660753 - MIR SINE MIR -143 65 16 237 221 52 52 chr3 122864336 122864413 -104660165 - MIR SINE MIR -76 186 110 39 22 0 0 chr3 122864934 122864980 -104659598 + AT_rich Low_complexity Low_complexity 1 46 0 2259 97 3 3 chr3 122865108 122865453 -104659125 - AluY SINE Alu 0 345 1 354 306 20 0 chr3 122866004 122866102 -104658476 + MIR SINE MIR 31 130 -78 1553 187 32 41 chr3 122866527 122866842 -104657736 - AluJb SINE Alu 0 312 1 266 279 176 22 chr3 122866860 122866996 -104657582 - MIR SINE MIR -73 189 33 452 301 62 51 chr3 122867230 122867254 -104657324 - L1ME LINE L1 -372 5749 5727 1423 138 104 22 chr3 122867254 122867523 -104657055 - AluJb SINE Alu -11 291 1 452 301 62 51 chr3 122867523 122867853 -104656725 - L1ME LINE L1 -394 5727 5391 377 264 23 0 chr3 122868247 122868334 -104656244 - MIR SINE MIR -78 130 42 726 261 55 15 chr3 122869871 122870070 -104654508 - MIR SINE MIR -44 218 12 377 221 73 52 chr3 122870844 122870980 -104653598 - MIR SINE MIR -55 207 69 190 263 0 0 chr3 122870997 122871035 -104653543 + L2 LINE L2 3219 3256 -16 * 194 237 0 0 chr3 122871001 122871039 -104653539 + MIR SINE MIR 219 256 -6 2161 102 14 0 chr3 122871068 122871361 -104653217 + AluSg SINE Alu 1 297 -13 529 138 0 0 chr3 122871765 122871858 -104652720 - THE1C LTR MaLR -54 321 237 327 174 0 18 chr3 122871849 122871933 -104652645 + Alu SINE Alu 240 291 -11 * 302 259 0 25 chr3 122871965 122872046 -104652532 - MLT1F LTR MaLR -462 80 2 2002 107 70 67 chr3 122872209 122872583 -104651995 - THE1C LTR MaLR 0 375 1 2081 148 117 8 chr3 122874017 122874403 -104650175 + MSTA LTR MaLR 1 428 0 2473 193 13 4 chr3 122874403 122874869 -104649709 - MER70B LTR ERVL -108 470 1 1696 132 0 4 chr3 122875993 122876228 -104648350 + AluSx SINE Alu 1 234 -78 15157 53 62 7 chr3 122876367 122878495 -104646083 - L1P LINE L1 -3892 2254 8 831 230 109 4 chr3 122878623 122878871 -104645707 + Charlie2 DNA MER1_type 46 319 -2543 803 276 62 47 chr3 122878888 122879172 -104645406 + Charlie2 DNA MER1_type 1865 2160 -702 2208 90 3 30 chr3 122879172 122879473 -104645105 + AluSx SINE Alu 1 293 -19 803 276 62 47 chr3 122879473 122879673 -104644905 + Charlie2 DNA MER1_type 2160 2356 -506 457 346 132 8 chr3 122879674 122879931 -104644647 + L2 LINE L2 2666 2954 -360 507 332 54 5 chr3 122879987 122880192 -104644386 + L2 LINE L2 3081 3295 -18 567 256 63 60 chr3 122880647 122880948 -104643630 + MLT1L LTR MaLR 203 504 -111 367 248 147 9 chr3 122880990 122881099 -104643479 - L2 LINE L2 0 3313 3190 569 315 38 5 chr3 122882103 122882287 -104642291 - MIR SINE MIR -4 258 69 2143 147 0 0 chr3 122883064 122883376 -104641202 - AluSx SINE Alu 0 312 1 1891 152 68 11 chr3 122883816 122884184 -104640394 - MLT1B LTR MaLR -1 389 1 292 177 0 48 chr3 122885281 122885343 -104639235 + MER3 DNA MER1_type 1 59 -150 572 248 85 13 chr3 122885412 122885565 -104639013 - L2 LINE L2 0 3272 3109 260 262 16 0 chr3 122885713 122885774 -104638804 - MIR SINE MIR -62 146 85 572 270 145 42 chr3 122887147 122887584 -104636994 - MLT1G1 LTR MaLR -107 460 1 449 310 66 40 chr3 122888617 122888920 -104635658 + L1M4 LINE L1 2338 2648 -3498 228 318 114 23 chr3 122888935 122889067 -104635511 + L2 LINE L2 2907 3050 -222 214 303 26 26 chr3 122890397 122890473 -104634105 - MIR SINE MIR -11 251 176 301 256 0 35 chr3 122890475 122890561 -104634017 + L2 LINE L2 2412 2494 -820 239 213 43 0 chr3 122890549 122890596 -104633982 + L2 LINE L2 3224 3272 0 * 232 279 162 0 chr3 122890597 122890708 -104633870 - MIR SINE MIR -86 176 48 509 314 52 18 chr3 122891421 122891650 -104632928 + MIR SINE MIR 14 250 -12 1990 94 98 4 chr3 122893291 122893568 -104631010 - AluSx SINE Alu -9 303 1 186 218 128 51 chr3 122895350 122895428 -104629150 - L2 LINE L2 -2 3311 3228 2460 190 31 13 chr3 122895555 122896097 -104628481 - MER74A LTR ERVL -3 555 4 25 31 0 0 chr3 122896899 122896931 -104627647 + AT_rich Low_complexity Low_complexity 1 32 0 229 229 0 0 chr3 122898073 122898121 -104626457 + L1ME1 LINE L1 5989 6036 -130 1008 274 24 11 chr3 122898191 122898560 -104626018 + L1MC4 LINE L1 7036 7409 -633 283 279 90 86 chr3 122899603 122899847 -104624731 - L2 LINE L2 -192 3080 2836 1796 190 0 0 chr3 122900125 122900420 -104624158 + AluJb SINE Alu 1 295 -17 38 0 0 0 chr3 122901252 122901290 -104623288 + AT_rich Low_complexity Low_complexity 1 38 0 4132 177 20 29 chr3 122901340 122902775 -104621803 - L1MB1 LINE L1 0 6168 4741 2203 129 0 0 chr3 122902784 122903093 -104621485 + AluSc SINE Alu 1 309 0 5213 233 28 12 chr3 122903096 122904610 -104619968 + L1P LINE L1 2523 4060 -2086 377 153 42 83 chr3 122904607 122904751 -104619827 - L1MB1 LINE L1 -1620 4526 4389 * 1674 77 5 0 chr3 122904868 122905076 -104619502 - AluSq SINE Alu -104 209 1 1495 274 70 4 chr3 122905148 122905706 -104618872 - L1M4 LINE L1 -1148 4998 4404 815 220 45 0 chr3 122905749 122905972 -104618606 - L1MA4 LINE L1 0 6300 6068 839 107 16 0 chr3 122905996 122906118 -104618460 - AluSp/q SINE Alu -2 311 188 9765 191 27 39 chr3 122906120 122906818 -104617760 + L1MC3 LINE L1 5177 5882 -1903 2289 101 0 7 chr3 122906818 122907124 -104617454 - AluSg1 SINE Alu -5 304 1 1787 166 6 41 chr3 122907130 122907449 -104617129 - AluJo SINE Alu -3 309 2 9765 191 27 39 chr3 122907449 122909165 -104615413 + L1MC3 LINE L1 5887 7578 -207 1816 112 64 70 chr3 122909403 122909715 -104614863 + AluSq SINE Alu 1 310 -3 23 33 0 0 chr3 122909970 122910000 -104614578 + AT_rich Low_complexity Low_complexity 1 30 0 1844 129 37 0 chr3 122911442 122911713 -104612865 + AluSx SINE Alu 2 282 -30 2414 133 70 5 chr3 122911740 122912140 -104612438 + MSTB LTR MaLR 1 426 0 265 299 65 23 chr3 122912596 122912841 -104611737 + L1M3b LINE L1 1 257 -6024 847 135 7 27 chr3 122912856 122913004 -104611574 - MSTA LTR MaLR -283 145 1 8992 154 28 12 chr3 122913004 122915803 -104608775 + L1MA4 LINE L1 3461 6295 -5 209 175 0 0 chr3 122915897 122915937 -104608641 + L2 LINE L2 3274 3313 0 653 325 59 38 chr3 122916129 122916550 -104608028 - L2 LINE L2 -3 3310 2881 959 252 14 18 chr3 122916563 122916781 -104607797 - MER58A DNA MER1_type -2 222 6 417 316 128 34 chr3 122916788 122917085 -104607493 - L2 LINE L2 -436 2878 2554 1701 129 4 36 chr3 122917103 122917381 -104607197 + AluSq SINE Alu 1 269 -44 212 267 123 75 chr3 122917396 122917542 -104607036 - L2 LINE L2 -848 2466 2314 225 246 33 0 chr3 122918378 122918439 -104606139 + MER103 DNA DNA 91 153 -13 259 245 127 18 chr3 122918545 122918682 -104605896 - MLT1L LTR MaLR -3 602 364 2041 69 0 11 chr3 122918834 122919108 -104605470 + AluY SINE Alu 1 271 -40 212 267 123 75 chr3 122919121 122919267 -104605311 - L2 LINE L2 -848 2466 2314 2292 77 3 0 chr3 122920088 122920387 -104604191 + AluY SINE Alu 1 300 -11 2289 101 0 0 chr3 122920541 122920848 -104603730 + AluSc SINE Alu 1 307 -2 615 294 11 11 chr3 122921035 122921215 -104603363 + LTR16A LTR ERVL 1 180 -270 2918 237 109 20 chr3 122921409 122922146 -104602432 - L1M4 LINE L1 -2646 3500 2619 2233 95 0 23 chr3 122922146 122922451 -104602127 - AluSc SINE Alu -9 300 3 2918 237 109 20 chr3 122922451 122922882 -104601696 - L1M4 LINE L1 -3527 2619 2228 1914 163 23 114 chr3 122922991 122923560 -104601018 - L1 LINE L1 -1743 4403 3887 9740 176 23 42 chr3 122923573 122926369 -104598209 + L1PB4 LINE L1 3055 5774 -382 378 91 0 0 chr3 122926369 122926424 -104598154 + (TG)n Simple_repeat Simple_repeat 2 56 0 9740 176 23 42 chr3 122926424 122926800 -104597778 + L1PB4 LINE L1 5774 6156 0 862 294 35 52 chr3 122926796 122927200 -104597378 + L1M4 LINE L1 3289 3679 -2467 * 1237 211 123 0 chr3 122927200 122927461 -104597117 + AluSx SINE Alu 1 293 -19 862 294 35 52 chr3 122927461 122927787 -104596791 + L1M4 LINE L1 3679 4009 -2137 2528 260 27 46 chr3 122928346 122929197 -104595381 + L1MCb LINE L1 1 835 -5210 575 239 45 0 chr3 122929195 122929350 -104595228 + L1MCb LINE L1 2650 2811 -3934 * 607 75 0 0 chr3 122929352 122929432 -104595146 + AluSg/x SINE Alu 218 297 -13 1957 221 22 74 chr3 122929446 122930113 -104594465 + L1MCb LINE L1 2810 3441 -3123 2310 146 8 3 chr3 122930113 122930477 -104594101 + MER47A DNA MER2_type 1 366 0 1957 221 22 74 chr3 122930477 122930501 -104594077 + L1MCb LINE L1 3441 3465 -3099 2168 102 0 0 chr3 122930604 122930907 -104593671 - AluSq SINE Alu 0 303 1 21 0 0 0 chr3 122930987 122931008 -104593570 + AT_rich Low_complexity Low_complexity 1 21 0 190 405 62 16 chr3 122931762 122932004 -104592574 + L2 LINE L2 1515 1767 -1547 610 249 89 57 chr3 122932302 122932541 -104592037 - L1M4b LINE L1 -3764 3224 2994 1578 178 67 25 chr3 122932541 122932901 -104591677 - THE1C LTR MaLR 0 375 1 2139 127 26 6 chr3 122932910 122933250 -104591328 + MER7A DNA MER2_type 2 346 0 610 249 89 57 chr3 122933250 122933387 -104591191 - L1M4b LINE L1 -4001 2987 2835 812 201 0 0 chr3 122933387 122933541 -104591037 - FRAM SINE Alu -23 153 1 657 285 44 60 chr3 122933573 122934005 -104590573 - L1M4b LINE L1 -4326 2812 2388 1549 269 29 55 chr3 122934007 122934786 -104589792 - L1M4b LINE L1 -4870 1985 1224 294 297 99 42 chr3 122935291 122935503 -104589075 - L1M4b LINE L1 -6624 235 12 22 70 0 0 chr3 122935524 122935567 -104589011 + AT_rich Low_complexity Low_complexity 1 43 0 347 316 78 42 chr3 122935769 122936152 -104588426 - L1M4 LINE L1 -2650 3496 3100 599 209 16 0 chr3 122936222 122936351 -104588227 + AluJb SINE Alu 1 131 -181 893 241 42 71 chr3 122936427 122936834 -104587744 - L1MC4 LINE L1 -44 7998 7604 599 209 16 0 chr3 122937220 122937349 -104587229 + AluJb SINE Alu 1 131 -181 2367 269 57 35 chr3 122937425 122938367 -104586211 - L1MC4 LINE L1 -44 7998 7036 244 109 0 22 chr3 122938385 122938431 -104586147 - L1ME1 LINE L1 -5 6161 6117 237 208 208 14 chr3 122938435 122938507 -104586071 - L1ME1 LINE L1 -130 6036 5951 1051 225 104 9 chr3 122938511 122938827 -104585751 - L1M4 LINE L1 -1776 4370 4025 7242 33 16 1 chr3 122938827 122939752 -104584826 + L1PA4 LINE L1 5255 6192 0 816 192 0 0 chr3 122939843 122939994 -104584584 - FRAM SINE Alu -12 164 14 27 0 0 0 chr3 122940264 122940291 -104584287 + AT_rich Low_complexity Low_complexity 1 27 0 1272 228 17 56 chr3 122940435 122940843 -104583735 - L1M4 LINE L1 -2112 4034 3643 287 267 0 0 chr3 122940854 122940914 -104583664 - MIR SINE MIR -8 254 195 388 221 7 66 chr3 122940921 122941057 -104583521 - L1MC4 LINE L1 -1 8041 7914 1139 264 54 83 chr3 122941408 122941927 -104582651 + LTR33 LTR ERVL 17 520 -1 396 0 0 0 chr3 122942912 122942956 -104581622 + (TC)n Simple_repeat Simple_repeat 2 45 0 * 510 103 0 0 chr3 122942955 122943033 -104581545 + (TA)n Simple_repeat Simple_repeat 1 78 0 235 242 33 22 chr3 122944658 122944749 -104579829 + MER103 DNA DNA 1 92 -74 244 250 92 0 chr3 122944947 122945023 -104579555 + MIR3 SINE MIR 126 208 0 196 256 105 47 chr3 122945355 122945441 -104579137 - MER5A DNA MER1_type -15 174 84 * 226 319 172 9 chr3 122945379 122945495 -104579083 + MER5A DNA MER1_type 55 189 0 314 256 136 60 chr3 122947458 122947657 -104576921 + MLT1K LTR MaLR 342 555 -33 1571 117 27 35 chr3 122947763 122948019 -104576559 - AluSc SINE Alu -55 254 1 322 244 180 32 chr3 122948094 122948427 -104576151 - L1ME LINE L1 -457 5664 5282 24 0 0 0 chr3 122948994 122949018 -104575560 + AT_rich Low_complexity Low_complexity 1 24 0 390 42 0 0 chr3 122951223 122951271 -104573307 + (TG)n Simple_repeat Simple_repeat 2 49 0 21 36 0 0 chr3 122951450 122951478 -104573100 + AT_rich Low_complexity Low_complexity 1 28 0 183 80 0 0 chr3 122953074 122953099 -104571479 + (TTATA)n Simple_repeat Simple_repeat 5 29 0 3076 137 33 27 chr3 122953119 122953151 -104571427 + Tigger3b DNA MER2_type 1 31 -2997 2153 109 0 0 chr3 122953151 122953436 -104571142 + AluSx SINE Alu 1 285 -27 279 0 0 0 chr3 122953436 122953467 -104571111 + (CA)n Simple_repeat Simple_repeat 2 32 0 3076 137 33 27 chr3 122953467 122953946 -104570632 + Tigger3b DNA MER2_type 30 516 -715 1944 158 0 10 chr3 122955388 122955692 -104568886 - AluJo SINE Alu -11 301 1 201 434 0 12 chr3 122955993 122956076 -104568502 - MIR SINE MIR -97 111 30 1940 115 0 0 chr3 122957005 122957265 -104567313 + AluSx SINE Alu 21 280 -32 192 40 0 0 chr3 122957266 122957291 -104567287 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 432 315 49 12 chr3 122957487 122957649 -104566929 + MIR SINE MIR 18 185 -77 297 0 0 0 chr3 122957649 122957682 -104566896 + (CA)n Simple_repeat Simple_repeat 2 34 0 2087 85 11 7 chr3 122959746 122960068 -104564510 - AluSc SINE Alu 0 323 1 321 337 61 12 chr3 122960540 122960703 -104563875 - MIR SINE MIR -56 206 36 657 0 45 0 chr3 122962169 122962257 -104562321 + (TAGA)n Simple_repeat Simple_repeat 1 92 0 2065 98 46 0 chr3 122963202 122963319 -104561259 + AluSc SINE Alu 1 111 -198 186 71 0 0 chr3 122963319 122963347 -104561231 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 2065 98 46 0 chr3 122963347 122963514 -104561064 + AluSc SINE Alu 111 298 -11 23 0 0 0 chr3 122963694 122963717 -104560861 + AT_rich Low_complexity Low_complexity 1 23 0 189 234 0 0 chr3 122964513 122964577 -104560001 + C-rich Low_complexity Low_complexity 1 64 0 260 269 0 20 chr3 122964651 122964800 -104559778 + C-rich Low_complexity Low_complexity 1 146 0 224 236 182 0 chr3 122965255 122965310 -104559268 - L2 LINE L2 0 3272 3208 2964 206 43 0 chr3 122965312 122965864 -104558714 - MER70B LTR ERVL -2 576 1 1034 263 158 66 chr3 122967802 122967941 -104556637 + L2 LINE L2 1592 1717 -1597 2274 117 0 0 chr3 122967941 122968248 -104556330 + AluSc SINE Alu 1 307 -2 1034 263 158 66 chr3 122968248 122968716 -104555862 + L2 LINE L2 1717 2255 -1059 241 340 100 0 chr3 122968892 122968992 -104555586 - MIR3 SINE MIR -10 198 89 655 108 10 0 chr3 122969011 122969113 -104555465 - AluY SINE Alu -14 297 195 30 27 0 0 chr3 122969193 122969230 -104555348 + AT_rich Low_complexity Low_complexity 1 37 0 2598 68 0 0 chr3 122969253 122969564 -104555014 + AluY SINE Alu 1 311 0 21 36 0 0 chr3 122969611 122969639 -104554939 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr3 122969755 122969786 -104554792 + AT_rich Low_complexity Low_complexity 1 31 0 543 279 48 12 chr3 122970816 122970981 -104553597 + MIR SINE MIR 22 192 -70 329 312 45 26 chr3 122971038 122971192 -104553386 + MIR SINE MIR 89 245 -17 723 278 32 45 chr3 122971269 122971523 -104553055 + MIR SINE MIR 10 261 -1 399 317 33 0 chr3 122972870 122972990 -104551588 - MER5A DNA MER1_type -63 126 3 302 255 0 69 chr3 122975011 122975113 -104549465 - L1ME4a LINE L1 -60 6061 5967 276 268 61 0 chr3 122975523 122975605 -104548973 - MER91B DNA MER1_type -68 122 36 379 293 114 10 chr3 122976160 122976367 -104548211 - MIR SINE MIR -13 249 16 581 258 8 0 chr3 122976414 122976538 -104548040 - FLAM_A SINE Alu -17 125 1 1156 221 152 61 chr3 122978428 122978922 -104545656 - L1MD2 LINE L1 -15 6344 5806 184 323 75 21 chr3 122980843 122980936 -104543642 + MIR3 SINE MIR 9 106 -102 1925 128 7 30 chr3 122981037 122981342 -104543236 - AluSx SINE Alu -14 298 1 423 316 128 34 chr3 122981360 122981657 -104542921 + L2 LINE L2 2554 2878 -436 915 243 14 18 chr3 122981664 122981882 -104542696 + MER58A DNA MER1_type 6 222 -2 590 299 67 65 chr3 122981890 122982324 -104542254 + L2 LINE L2 2876 3310 -3 207 175 0 0 chr3 122982517 122982557 -104542021 - L2 LINE L2 0 3313 3274 6957 154 33 14 chr3 122982651 122985067 -104539511 - L1MA4 LINE L1 -5 6295 3843 370 259 98 75 chr3 122985259 122985433 -104539145 + MIR SINE MIR 7 184 -78 2370 78 14 0 chr3 122985903 122986198 -104538380 - AluY SINE Alu -12 299 1 2230 109 10 3 chr3 122986478 122986780 -104537798 + AluSx SINE Alu 1 304 -8 2329 65 0 7 chr3 122987242 122987533 -104537045 + AluY SINE Alu 1 289 -22 771 148 8 8 chr3 122987906 122988028 -104536550 + FLAM_C SINE Alu 3 124 -19 355 359 30 42 chr3 122988053 122988315 -104536263 - MIR SINE MIR 0 262 4 23 54 0 0 chr3 122988732 122988769 -104535809 + AT_rich Low_complexity Low_complexity 1 37 0 23 33 0 0 chr3 122989421 122989451 -104535127 + AT_rich Low_complexity Low_complexity 1 30 0 462 243 202 22 chr3 122989856 122990128 -104534450 + L1M4 LINE L1 5013 5333 -813 367 286 49 69 chr3 122990150 122990268 -104534310 + L1ME LINE L1 5159 5278 -884 2443 70 3 3 chr3 122990268 122990567 -104534011 - AluY SINE Alu -12 299 1 367 286 49 69 chr3 122990567 122991074 -104533504 + L1ME LINE L1 5278 5759 -403 2368 76 3 29 chr3 122991231 122991546 -104533032 + AluY SINE Alu 1 307 -4 2323 48 17 0 chr3 122993949 122994242 -104530336 - AluY SINE Alu -13 298 1 2388 248 75 46 chr3 122994258 122995186 -104529392 - L1MDa LINE L1 -5477 1063 18 1113 257 76 85 chr3 122995303 122996090 -104528488 + L2 LINE L2 2539 3313 0 251 275 88 22 chr3 122998321 122998412 -104526166 + L2 LINE L2 3200 3296 -17 764 269 0 20 chr3 122999114 122999367 -104525211 - L1M4 LINE L1 -1435 4711 4464 514 302 172 39 chr3 122999618 123000078 -104524500 - L1M4 LINE L1 -2028 4118 3598 2180 105 3 7 chr3 123000274 123000578 -104524000 - AluSx SINE Alu -9 303 1 816 209 35 210 chr3 123001407 123001875 -104522703 - L2 LINE L2 -245 3068 2756 437 167 0 0 chr3 123001875 123001971 -104522607 - L1MA4 LINE L1 0 6300 6205 816 209 35 210 chr3 123001971 123002164 -104522414 - L2 LINE L2 -557 2756 2531 397 311 47 58 chr3 123002784 123002974 -104521604 - MIR SINE MIR -35 227 40 196 302 151 9 chr3 123003470 123003576 -104521002 - MIR3 SINE MIR -3 205 85 888 177 143 82 chr3 123003996 123004324 -104520254 + MLT1A1 LTR MaLR 1 348 -17 22 0 0 0 chr3 123004822 123004844 -104519734 + AT_rich Low_complexity Low_complexity 1 22 0 4087 184 55 45 chr3 123006359 123007161 -104517417 + L1MD1 LINE L1 4626 5419 -823 755 194 0 0 chr3 123007161 123007290 -104517288 + FLAM_A SINE Alu 3 131 -2 4087 184 55 45 chr3 123007290 123007802 -104516776 + L1MD1 LINE L1 5419 5959 -283 2108 123 10 3 chr3 123007802 123008110 -104516468 + AluSg SINE Alu 1 310 0 4087 184 55 45 chr3 123008110 123008397 -104516181 + L1MD1 LINE L1 5959 6242 0 21 36 0 0 chr3 123009007 123009035 -104515543 + AT_rich Low_complexity Low_complexity 1 28 0 288 309 133 25 chr3 123009151 123009513 -104515065 + L1MC/D LINE L1 5374 5774 -2034 355 314 72 44 chr3 123009626 123009945 -104514633 - MLT1J LTR MaLR -101 410 83 1494 192 25 11 chr3 123011590 123011876 -104512702 - AluJb SINE Alu -22 290 1 792 224 125 34 chr3 123012575 123013107 -104511471 + LTR50 LTR ERVL 1 791 -4 335 286 74 74 chr3 123013152 123013369 -104511209 - MIR SINE MIR -26 236 20 454 253 42 66 chr3 123014359 123014739 -104509839 + L1MC5 LINE L1 7289 7659 -302 * 809 85 39 0 chr3 123014733 123014862 -104509716 + L1MA7 LINE L1 6088 6221 -70 1994 112 11 45 chr3 123014862 123015220 -104509358 - Tigger2a DNA MER2_type -88 346 1 618 170 112 31 chr3 123015308 123015567 -104509011 + L1MC5 LINE L1 7647 7926 -35 23 0 0 0 chr3 123015650 123015673 -104508905 + AT_rich Low_complexity Low_complexity 1 23 0 596 218 147 11 chr3 123015894 123016157 -104508421 + MSTA LTR MaLR 1 285 -90 4314 198 45 15 chr3 123016897 123017031 -104507547 + L1PBa LINE L1 2623 2752 -4110 2208 107 0 0 chr3 123017031 123017320 -104507258 + AluY SINE Alu 1 289 -22 4314 198 45 15 chr3 123017320 123017711 -104506867 + L1PBa LINE L1 2752 3130 -3732 2106 122 0 7 chr3 123017711 123018005 -104506573 - AluSx SINE Alu -18 294 3 4314 198 45 15 chr3 123018005 123018776 -104505802 + L1PBa LINE L1 3130 3958 -2904 22 0 0 0 chr3 123018887 123018909 -104505669 + AT_rich Low_complexity Low_complexity 1 22 0 1485 190 103 29 chr3 123019054 123019501 -104505077 + L1MDa LINE L1 1161 1640 -4900 2342 47 7 0 chr3 123019503 123019782 -104504796 + AluY SINE Alu 1 281 -30 23 68 0 0 chr3 123020170 123020214 -104504364 + AT_rich Low_complexity Low_complexity 1 44 0 2434 56 0 0 chr3 123020666 123020991 -104503587 - AluY SINE Alu 0 311 1 201 237 17 17 chr3 123022996 123023055 -104501523 + (CCG)n Simple_repeat Simple_repeat 2 60 0 331 280 20 47 chr3 123023190 123023340 -104501238 - L1MC/D LINE L1 -2346 5462 5317 840 257 76 92 chr3 123023972 123024431 -104500147 - L2 LINE L2 -5 3308 2857 336 279 125 0 chr3 123024765 123024869 -104499709 - L2 LINE L2 0 3313 3197 24 0 0 0 chr3 123025171 123025195 -104499383 + AT_rich Low_complexity Low_complexity 1 24 0 2246 99 0 0 chr3 123025732 123026015 -104498563 + AluSg SINE Alu 1 283 -27 1801 180 64 5 chr3 123027536 123027594 -104496984 - L1MA9 LINE L1 -101 6211 6158 2056 105 0 65 chr3 123027594 123027918 -104496660 - AluY SINE Alu -7 304 2 1801 180 64 5 chr3 123027918 123028264 -104496314 - L1MA9 LINE L1 -154 6158 5783 21 71 0 0 chr3 123028268 123028310 -104496268 + AT_rich Low_complexity Low_complexity 1 42 0 708 250 6 17 chr3 123028505 123028681 -104495897 + MER5B DNA MER1_type 1 174 -4 238 277 117 51 chr3 123028909 123029046 -104495532 + Charlie8 DNA MER1_type 116 261 -2156 222 333 26 0 chr3 123029299 123029377 -104495201 - MIR SINE MIR -71 191 112 1114 140 0 0 chr3 123029857 123030043 -104494535 - L1PB1 LINE L1 -125 6026 5841 206 206 10 69 chr3 123030078 123030180 -104494398 + (TAAA)n Simple_repeat Simple_repeat 1 96 0 1874 176 27 81 chr3 123030354 123030836 -104493742 + LTR32 LTR ERVL 15 470 -1 4993 210 21 6 chr3 123032655 123033898 -104490680 + L1 LINE L1 3402 4662 -1484 23 33 0 0 chr3 123034318 123034348 -104490230 + AT_rich Low_complexity Low_complexity 1 30 0 527 274 49 6 chr3 123036114 123036278 -104488300 + MIR SINE MIR 22 192 -70 304 314 52 26 chr3 123036335 123036488 -104488090 + MIR SINE MIR 89 245 -17 594 310 32 45 chr3 123036565 123036819 -104487759 + MIR SINE MIR 10 261 -1 313 284 68 40 chr3 123037672 123037848 -104486730 + MIR SINE MIR 36 216 -46 425 287 134 13 chr3 123038704 123038861 -104485717 + MER5B DNA MER1_type 3 178 0 2295 72 0 10 chr3 123039027 123039318 -104485260 + AluSq SINE Alu 1 288 -25 252 86 0 0 chr3 123039318 123039353 -104485225 + (CA)n Simple_repeat Simple_repeat 2 36 0 325 324 101 14 chr3 123039646 123039785 -104484793 - MIR SINE MIR -56 206 56 453 280 154 6 chr3 123040882 123041064 -104483514 - MIR SINE MIR -6 256 48 2332 88 3 3 chr3 123041182 123041479 -104483099 - AluSq SINE Alu -16 297 1 21 0 0 0 chr3 123041559 123041580 -104482998 + AT_rich Low_complexity Low_complexity 1 21 0 228 261 101 59 chr3 123042635 123042754 -104481824 + L2 LINE L2 1861 1984 -1330 252 0 0 0 chr3 123042938 123042966 -104481612 + (CAA)n Simple_repeat Simple_repeat 3 30 0 2360 83 0 0 chr3 123042974 123043262 -104481316 + AluSq SINE Alu 1 288 -25 270 81 0 0 chr3 123043262 123043299 -104481279 + (CA)n Simple_repeat Simple_repeat 2 38 0 325 324 101 14 chr3 123043592 123043731 -104480847 - MIR SINE MIR -56 206 56 228 67 0 0 chr3 123044992 123045022 -104479556 + U6 snRNA snRNA 1 30 -77 2567 264 75 62 chr3 123045814 123047232 -104477346 - L1MEc LINE L1 -4925 1471 36 1209 158 222 7 chr3 123047420 123047717 -104476861 - MER46B DNA MER2_type 0 236 1 349 206 41 0 chr3 123048212 123048285 -104476293 - MER58A DNA MER1_type -31 76 1 270 165 63 38 chr3 123048300 123048379 -104476199 - L1MC5 LINE L1 -770 7191 7111 630 271 115 5 chr3 123048582 123048800 -104475778 - MIR SINE MIR 0 262 21 24 0 0 0 chr3 123050348 123050372 -104474206 + AT_rich Low_complexity Low_complexity 1 24 0 881 176 218 112 chr3 123050501 123050968 -104473610 + MER67D LTR ERV1 1 466 0 2757 105 39 5 chr3 123051195 123051606 -104472972 - MER61B LTR ERV1 0 425 1 2425 42 0 3 chr3 123052007 123052293 -104472285 + AluY SINE Alu 1 285 -26 320 267 97 18 chr3 123052539 123052756 -104471822 + L1MEd LINE L1 1013 1246 -4873 269 261 85 33 chr3 123052752 123052905 -104471673 + HAL1 LINE L1 1381 1541 -966 * 803 144 8 0 chr3 123053024 123053149 -104471429 + AluSc SINE Alu 166 291 -18 364 228 74 34 chr3 123053487 123053636 -104470942 + L1ME3A LINE L1 5784 5938 -232 661 127 172 0 chr3 123054471 123054605 -104469973 + THE1B LTR MaLR 208 364 0 296 255 132 0 chr3 123054605 123054711 -104469867 - L2 LINE L2 -96 3217 3098 * 707 263 183 31 chr3 123054710 123055165 -104469413 + L2 LINE L2 2789 3293 -20 243 26 26 26 chr3 123055282 123055320 -104469258 + (TC)n Simple_repeat Simple_repeat 1 38 0 1008 310 91 13 chr3 123055401 123055850 -104468728 - L2 LINE L2 -398 2916 2433 201 269 0 43 chr3 123056883 123056976 -104467602 + GA-rich Low_complexity Low_complexity 2 90 0 2409 77 0 3 chr3 123058724 123059021 -104465557 + AluSg SINE Alu 1 296 -14 566 258 6 22 chr3 123059022 123059204 -104465374 - MER20 DNA MER1_type -7 212 34 259 329 38 0 chr3 123060674 123060753 -104463825 + MIR3 SINE MIR 120 201 -7 5341 152 54 17 chr3 123061750 123062771 -104461807 - L1MC1 LINE L1 -4 6329 5271 * 13072 173 32 13 chr3 123062747 123063103 -104461475 - L1PB1 LINE L1 0 6151 5803 495 33 0 0 chr3 123063103 123063164 -104461414 + (CA)n Simple_repeat Simple_repeat 2 62 0 13072 173 32 13 chr3 123063164 123063634 -104460944 - L1PB1 LINE L1 -348 5803 5343 2698 25 52 0 chr3 123063634 123063959 -104460619 - L1PA7 LINE L1 -1 6153 5812 13072 173 32 13 chr3 123063959 123066765 -104457813 - L1PB1 LINE L1 -808 5343 2591 2327 105 0 0 chr3 123066765 123067059 -104457519 + AluSx SINE Alu 1 294 -18 13072 173 32 13 chr3 123067059 123067451 -104457127 - L1PB1 LINE L1 -3560 2591 2208 2318 90 0 0 chr3 123067451 123067740 -104456838 - AluY SINE Alu -22 289 1 13072 173 32 13 chr3 123067740 123069056 -104455522 - L1PB1 LINE L1 -3943 2208 676 1035 153 11 0 chr3 123069053 123069243 -104455335 - L1PB1 LINE L1 -6666 197 6 * 4676 218 25 29 chr3 123069254 123070592 -104453986 - L1M4 LINE L1 -841 5305 3974 2282 59 63 0 chr3 123072823 123073110 -104451468 - AluY SINE Alu -6 305 1 202 260 82 27 chr3 123073214 123073287 -104451291 - MER5A DNA MER1_type -4 185 109 201 39 0 0 chr3 123073287 123073313 -104451265 + (A)n Simple_repeat Simple_repeat 1 26 0 289 368 0 0 chr3 123073317 123073404 -104451174 + MER5A DNA MER1_type 100 186 -3 2212 66 43 16 chr3 123073600 123073904 -104450674 + AluSp SINE Alu 1 312 -1 24 0 0 0 chr3 123074280 123074304 -104450274 + AT_rich Low_complexity Low_complexity 1 24 0 5286 112 4 0 chr3 123074539 123075305 -104449273 + L1PA8 LINE L1 5391 6159 -13 4236 126 10 35 chr3 123075305 123075769 -104448809 + L1PA16 LINE L1 5470 5913 -253 2585 46 0 0 chr3 123075769 123076073 -104448505 - AluY SINE Alu -7 304 1 4236 126 10 35 chr3 123076073 123076318 -104448260 + L1PA16 LINE L1 5913 6163 -3 2234 104 0 25 chr3 123076369 123076685 -104447893 + AluSc SINE Alu 1 308 -1 1769 183 11 0 chr3 123076947 123077231 -104447347 + AluJb SINE Alu 5 291 -21 540 332 39 10 chr3 123077322 123077530 -104447048 - MIR SINE MIR -29 233 20 2127 86 32 0 chr3 123078758 123079038 -104445540 + AluSg1 SINE Alu 8 296 -13 2387 76 17 0 chr3 123080285 123080587 -104443991 - AluSx SINE Alu -5 307 1 425 287 134 13 chr3 123080753 123080910 -104443668 - MER5B DNA MER1_type 0 178 3 404 302 50 39 chr3 123081767 123081946 -104442632 - MIR SINE MIR -46 216 36 694 219 7 20 chr3 123083052 123083203 -104441375 + MIR SINE MIR 82 230 -32 189 176 59 39 chr3 123083251 123083302 -104441276 + L2 LINE L2 3004 3055 -217 252 325 127 32 chr3 123083711 123083837 -104440741 + L2 LINE L2 3121 3258 -14 1173 124 0 0 chr3 123084714 123084900 -104439678 - L1PB1 LINE L1 -125 6026 5841 206 206 10 69 chr3 123084935 123085037 -104439541 + (TAAA)n Simple_repeat Simple_repeat 1 96 0 2174 166 23 73 chr3 123085211 123085692 -104438886 + LTR32 LTR ERVL 15 471 0 302 250 139 28 chr3 123086714 123086822 -104437756 - HAL1 LINE L1 -144 2363 2244 231 259 0 17 chr3 123086918 123086976 -104437602 - MER63 DNA MER1_type -316 744 688 1581 182 14 30 chr3 123087099 123087396 -104437182 - AluJb SINE Alu -20 292 1 517 251 46 64 chr3 123087550 123087940 -104436638 + L1MC5 LINE L1 7277 7659 -302 * 809 85 39 0 chr3 123087934 123088063 -104436515 + L1MA7 LINE L1 6088 6221 -70 2062 103 11 45 chr3 123088063 123088421 -104436157 - Tigger2a DNA MER2_type -88 346 1 618 170 112 31 chr3 123088509 123088768 -104435810 + L1MC5 LINE L1 7647 7926 -35 23 0 0 0 chr3 123088851 123088874 -104435704 + AT_rich Low_complexity Low_complexity 1 23 0 1014 245 180 43 chr3 123088887 123089095 -104435483 - HAL1 LINE L1 -560 1947 1769 2158 112 164 0 chr3 123089095 123089461 -104435117 + MSTA LTR MaLR 1 426 -2 1014 245 180 43 chr3 123089461 123089808 -104434770 - HAL1 LINE L1 -738 1769 1290 2229 116 0 0 chr3 123089808 123090100 -104434478 - AluSx SINE Alu -12 300 9 1014 245 180 43 chr3 123090100 123090189 -104434389 - HAL1 LINE L1 -1217 1290 1214 539 311 70 36 chr3 123090203 123090560 -104434018 - LTR16B LTR ERVL -53 411 43 277 288 25 0 chr3 123090616 123090696 -104433882 + MIR SINE MIR 175 256 -6 4408 134 28 25 chr3 123090699 123091513 -104433065 - L1MA9 LINE L1 -1 6311 5495 24 0 0 0 chr3 123091571 123091595 -104432983 + AT_rich Low_complexity Low_complexity 1 24 0 1178 187 80 33 chr3 123092013 123092377 -104432201 + L1MA9 LINE L1 5894 6274 -38 28 0 0 0 chr3 123092384 123092412 -104432166 + AT_rich Low_complexity Low_complexity 1 28 0 201 269 0 43 chr3 123093121 123093214 -104431364 + GA-rich Low_complexity Low_complexity 2 90 0 370 259 98 75 chr3 123095051 123095225 -104429353 + MIR SINE MIR 7 184 -78 2428 71 14 0 chr3 123095696 123095992 -104428586 - AluY SINE Alu -11 300 1 2300 107 10 3 chr3 123096272 123096582 -104427996 + AluSx SINE Alu 1 312 0 2403 86 3 3 chr3 123097053 123097366 -104427212 + AluSq SINE Alu 1 313 0 473 322 125 45 chr3 123097449 123098333 -104426245 + L1MC4a LINE L1 4297 5253 -893 963 277 60 69 chr3 123098335 123098973 -104425605 + L1MC4a LINE L1 5255 5886 -1922 7801 104 24 68 chr3 123100644 123102002 -104422576 + HSMAR2 DNA Mariner 5 1302 0 296 243 0 29 chr3 123103341 123103411 -104421167 - MIR SINE MIR -186 76 9 1132 88 0 7 chr3 123104017 123104165 -104420413 + AluSc SINE Alu 150 296 -13 184 323 75 21 chr3 123104266 123104359 -104420219 - MIR3 SINE MIR -102 106 9 1247 217 151 58 chr3 123106277 123106774 -104417804 + L1MD2 LINE L1 5802 6344 -15 570 266 8 0 chr3 123108668 123108792 -104415786 + FLAM_A SINE Alu 1 125 -17 393 233 90 15 chr3 123108913 123109046 -104415532 + MIR SINE MIR 107 249 -13 276 268 61 0 chr3 123109601 123109683 -104414895 + MER91B DNA MER1_type 36 122 -68 302 255 0 69 chr3 123110091 123110193 -104414385 + L1ME4a LINE L1 5967 6061 -60 910 316 64 53 chr3 123110969 123111498 -104413080 - L2 LINE L2 -989 2325 1791 1128 152 88 0 chr3 123112540 123112757 -104411821 + L1MD1 LINE L1 5998 6233 -9 330 115 0 0 chr3 123112764 123112816 -104411762 + (GGAA)n Simple_repeat Simple_repeat 4 55 0 1901 136 13 16 chr3 123114546 123114856 -104409722 - AluJb SINE Alu -3 309 1 1137 241 13 0 chr3 123116482 123116714 -104407864 + MIR SINE MIR 17 251 -11 237 108 0 0 chr3 123116715 123116752 -104407826 + (TTA)n Simple_repeat Simple_repeat 2 38 0 23 33 0 0 chr3 123116931 123116961 -104407617 + AT_rich Low_complexity Low_complexity 1 30 0 23 54 0 0 chr3 123117613 123117650 -104406928 + AT_rich Low_complexity Low_complexity 1 37 0 361 359 30 42 chr3 123118067 123118329 -104406249 + MIR SINE MIR 4 262 0 814 149 8 0 chr3 123118354 123118475 -104406103 - FLAM_C SINE Alu -19 124 3 2458 55 0 0 chr3 123118848 123119137 -104405441 - AluY SINE Alu -22 289 1 406 155 60 43 chr3 123120948 123121035 -104403543 + L1M1 LINE L1 3344 3435 -4130 3767 118 30 13 chr3 123121035 123121636 -104402942 + LTR36 LTR ERV1 1 611 0 406 155 60 43 chr3 123121636 123121664 -104402914 + L1M1 LINE L1 3435 3461 -4104 264 318 92 44 chr3 123121703 123122018 -104402560 - L2 LINE L2 -337 2977 2648 326 271 202 0 chr3 123122558 123122687 -104401891 + MIR SINE MIR 108 262 0 1981 49 13 4 chr3 123122761 123123702 -104400876 + L1PA6 LINE L1 5036 6153 -1 651 193 20 40 chr3 123123724 123123913 -104400665 - L1ME3 LINE L1 -91 6071 5887 568 269 40 114 chr3 123124187 123124484 -104400094 - L2 LINE L2 0 3313 3039 25 0 0 0 chr3 123126688 123126713 -104397865 + AT_rich Low_complexity Low_complexity 1 25 0 2270 95 80 0 chr3 123130827 123131164 -104393414 + THE1B LTR MaLR 1 364 0 307 255 132 0 chr3 123131164 123131270 -104393308 - L2 LINE L2 -96 3217 3098 * 725 270 175 32 chr3 123131269 123131729 -104392849 + L2 LINE L2 2789 3293 -20 321 26 0 0 chr3 123131851 123131889 -104392689 + (TC)n Simple_repeat Simple_repeat 1 38 0 26 50 0 0 chr3 123131927 123131967 -104392611 + AT_rich Low_complexity Low_complexity 1 40 0 1115 310 89 12 chr3 123131968 123132452 -104392126 - L2 LINE L2 -398 2916 2396 259 293 171 29 chr3 123133939 123134079 -104390499 - MIR SINE MIR -73 189 30 327 254 249 17 chr3 123136984 123137157 -104387421 + MIR SINE MIR 13 225 -37 198 0 0 0 chr3 123137247 123137269 -104387309 + (CA)n Simple_repeat Simple_repeat 1 22 0 2442 81 0 0 chr3 123137689 123137997 -104386581 + AluY SINE Alu 1 308 -3 1719 123 89 20 chr3 123138212 123138504 -104386074 + AluSx SINE Alu 1 312 0 338 254 154 0 chr3 123140263 123140393 -104384185 + L1MC5 LINE L1 7733 7882 -79 361 289 66 33 chr3 123141276 123141428 -104383150 + MIR3 SINE MIR 5 161 -47 24 0 0 0 chr3 123141824 123141848 -104382730 + AT_rich Low_complexity Low_complexity 1 24 0 1118 148 6 0 chr3 123142087 123142256 -104382322 - AluSq SINE Alu -6 307 138 337 65 0 0 chr3 123142330 123142376 -104382202 + MADE1 DNA Mariner 34 79 -1 739 346 133 26 chr3 123142377 123143109 -104381469 + L2 LINE L2 1846 2655 -659 388 357 103 34 chr3 123143648 123144214 -104380364 + L2 LINE L2 2648 3239 -33 252 241 0 0 chr3 123144218 123144297 -104380281 + (TA)n Simple_repeat Simple_repeat 1 79 0 357 24 0 0 chr3 123144352 123144394 -104380184 + (CA)n Simple_repeat Simple_repeat 1 42 0 308 239 83 64 chr3 123144803 123144912 -104379666 + L3 LINE CR1 1393 1503 -74 650 106 0 0 chr3 123144960 123145054 -104379524 + AluY SINE Alu 214 307 -4 477 304 37 0 chr3 123145185 123145346 -104379232 - MARNA DNA Mariner -176 410 244 231 238 157 61 chr3 123145454 123145601 -104378977 + MARNA DNA Mariner 399 559 -27 261 242 124 25 chr3 123147695 123147856 -104376722 + L1ME4a LINE L1 5944 6120 -1 251 327 40 76 chr3 123148476 123148699 -104375879 + L2 LINE L2 2881 3095 -177 207 0 0 0 chr3 123148902 123148925 -104375653 + (TG)n Simple_repeat Simple_repeat 2 24 0 924 251 86 26 chr3 123148972 123149311 -104375267 - L1MC4a LINE L1 -1892 5916 5558 24 67 0 0 chr3 123149407 123149452 -104375126 + AT_rich Low_complexity Low_complexity 1 45 0 698 285 80 53 chr3 123149890 123150158 -104374420 - HAL1b LINE L1 -495 853 594 2481 78 0 0 chr3 123150158 123150464 -104374114 - AluSc SINE Alu -3 306 1 698 285 80 53 chr3 123150464 123150742 -104373836 - HAL1b LINE L1 -754 594 292 729 233 87 44 chr3 123151004 123151210 -104373368 - MER58C DNA MER1_type 0 215 1 253 264 139 23 chr3 123151477 123151490 -104373088 - L1MA9 LINE L1 -2 6310 6298 1761 235 53 21 chr3 123151490 123152040 -104372538 - L1ME1 LINE L1 -11 6153 5574 860 189 0 0 chr3 123152049 123152202 -104372376 + FRAM SINE Alu 21 173 -3 4759 228 66 19 chr3 123152204 123152475 -104372103 - L1ME1 LINE L1 -583 5583 5326 2357 95 3 0 chr3 123152475 123152781 -104371797 - AluSp SINE Alu -6 307 1 4759 228 66 19 chr3 123152781 123154073 -104370505 - L1ME1 LINE L1 -840 5326 3940 1892 158 114 14 chr3 123154677 123155037 -104369541 + MSTD LTR MaLR 1 396 0 2212 86 14 7 chr3 123155854 123156144 -104368434 - AluSx SINE Alu -20 292 1 1710 149 35 62 chr3 123156815 123157185 -104367393 - MER46B DNA MER2_type 0 236 2 2334 99 0 6 chr3 123157541 123157855 -104366723 + AluSx SINE Alu 1 312 0 265 335 102 29 chr3 123157885 123158160 -104366418 + L2 LINE L2 1633 1927 -1387 211 388 10 0 chr3 123158971 123159074 -104365504 - MER5A DNA MER1_type -33 156 53 258 296 25 86 chr3 123159330 123159492 -104365086 - LTR68 LTR ERV1 -292 448 297 872 202 54 25 chr3 123159874 123160077 -104364501 - U3 snRNA snRNA -8 209 1 191 355 0 0 chr3 123160137 123160213 -104364365 - MIR SINE MIR -111 97 22 618 301 111 0 chr3 123160514 123160730 -104363848 + MIR SINE MIR 2 241 -21 533 288 61 0 chr3 123160960 123161108 -104363470 + MER69A DNA AcHobo 5 165 -2361 216 0 0 0 chr3 123161108 123161132 -104363446 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 533 288 61 0 chr3 123161132 123161146 -104363432 + MER69A DNA AcHobo 165 177 0 2352 44 4 0 chr3 123161465 123161737 -104362841 + AluY SINE Alu 21 293 -18 233 404 37 29 chr3 123163746 123163882 -104360696 - L2 LINE L2 -20 3252 3116 276 304 116 29 chr3 123165219 123165357 -104359221 + MIR SINE MIR 57 206 -56 2135 116 20 3 chr3 123166336 123166639 -104357939 - AluSx SINE Alu 0 312 5 457 300 33 0 chr3 123166827 123166947 -104357631 - L2 LINE L2 0 3313 3190 295 260 113 59 chr3 123170797 123170982 -104353596 + MIR3 SINE MIR 3 207 -55 243 310 69 17 chr3 123171431 123171547 -104353031 - L3b LINE CR1 -181 1402 1281 1166 148 42 4 chr3 123171714 123171951 -104352627 + L1MA3 LINE L1 6060 6305 0 518 238 73 13 chr3 123172275 123172426 -104352152 - MIR SINE MIR -102 160 1 621 90 0 0 chr3 123174217 123174306 -104350272 + (GGAA)n Simple_repeat Simple_repeat 2 90 0 365 303 53 26 chr3 123174538 123174705 -104349873 + MIR SINE MIR 17 191 -64 549 305 17 17 chr3 123174741 123174918 -104349660 - MIR SINE MIR -34 228 52 1886 174 0 0 chr3 123175716 123176009 -104348569 - AluJb SINE Alu -19 293 1 300 288 32 0 chr3 123176563 123176688 -104347890 + L1ME4a LINE L1 5991 6119 -2 262 311 145 8 chr3 123176995 123177230 -104347348 + L1MC/D LINE L1 5607 5873 -1935 22 0 0 0 chr3 123177230 123177252 -104347326 + AT_rich Low_complexity Low_complexity 1 22 0 1831 145 104 65 chr3 123177856 123178290 -104346288 + LTR47A LTR ERVL 1 451 -1 6933 57 8 7 chr3 123178409 123179885 -104344693 - L1PA6 LINE L1 -7 6147 4669 2053 138 3 0 chr3 123179885 123180176 -104344402 - AluSx SINE Alu -20 292 1 6933 57 8 7 chr3 123180176 123180201 -104344377 - L1PA6 LINE L1 -1485 4669 4646 296 347 177 9 chr3 123180222 123180377 -104344201 + MIR SINE MIR 16 190 -63 5568 166 43 44 chr3 123180406 123181314 -104343264 + L1MB3 LINE L1 20 927 -5457 1230 60 0 22 chr3 123181314 123181498 -104343080 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 2157 142 0 0 chr3 123181508 123181819 -104342759 + AluSx SINE Alu 1 311 -1 5568 166 43 44 chr3 123181819 123181992 -104342586 + L1MB3 LINE L1 936 1113 -5271 2389 89 0 0 chr3 123181992 123182295 -104342283 + AluY SINE Alu 3 305 -6 5568 166 43 44 chr3 123182295 123182390 -104342188 + L1MB3 LINE L1 1113 1207 -5177 1063 79 7 14 chr3 123182390 123182529 -104342049 + AluSq/x SINE Alu 1 138 -174 2009 125 4 0 chr3 123182529 123182808 -104341770 + AluSc SINE Alu 3 282 -27 845 110 0 0 chr3 123182808 123182917 -104341661 + AluSg/x SINE Alu 187 295 -17 424 211 88 0 chr3 123182917 123183031 -104341547 + L1MB3 LINE L1 1196 1319 -5065 * 913 181 146 4 chr3 123183020 123183246 -104341332 + L1MB3 LINE L1 5655 5912 -507 * 4370 153 22 9 chr3 123183243 123184014 -104340564 + L1MA8 LINE L1 5344 6124 -167 2902 148 6 34 chr3 123184025 123184558 -104340020 + L1MB3 LINE L1 5902 6419 0 2288 69 0 0 chr3 123185258 123185534 -104339044 + AluY SINE Alu 22 297 -14 2171 125 3 3 chr3 123185627 123185931 -104338647 + AluSx SINE Alu 5 308 -4 376 269 39 15 chr3 123186386 123186516 -104338062 + MER117 DNA MER1_type 2 134 -63 222 284 134 0 chr3 123187360 123187427 -104337151 - L3 LINE CR1 -437 1140 1065 480 238 47 36 chr3 123187661 123187854 -104336724 - L1MA9 LINE L1 -16 6296 6102 951 219 99 21 chr3 123188758 123189141 -104335437 + L1MC5 LINE L1 7083 7495 -466 810 246 58 7 chr3 123189203 123189496 -104335082 + L1MC5 LINE L1 7603 7910 -51 2156 148 17 57 chr3 123189502 123189908 -104334670 - MLT1B LTR MaLR 0 390 1 35 41 0 0 chr3 123189910 123189959 -104334619 + AT_rich Low_complexity Low_complexity 1 49 0 684 355 115 28 chr3 123190363 123191041 -104333537 + L3 LINE CR1 590 1326 -251 292 354 63 51 chr3 123191043 123191200 -104333378 + L2 LINE L2 2985 3147 -125 1777 205 8 11 chr3 123191200 123191566 -104333012 - MLT1A1 LTR MaLR 0 365 1 292 354 63 51 chr3 123191566 123191645 -104332933 + L2 LINE L2 3147 3224 -48 695 217 153 0 chr3 123193299 123193456 -104331122 - MER5A DNA MER1_type 0 189 9 5401 145 9 9 chr3 123193786 123194754 -104329824 + L1PA16 LINE L1 5198 6165 -1 2331 89 0 0 chr3 123194964 123195257 -104329321 + AluSg1 SINE Alu 3 295 -14 709 335 134 37 chr3 123196629 123197183 -104327395 - L2 LINE L2 -3 3310 2710 2400 86 0 0 chr3 123197183 123197487 -104327091 - AluY SINE Alu -7 304 1 709 335 134 37 chr3 123197487 123197521 -104327057 - L2 LINE L2 -603 2710 2681 242 278 14 42 chr3 123197599 123197671 -104326907 + L2 LINE L2 3203 3272 0 336 319 99 28 chr3 123199157 123199339 -104325239 + MIR SINE MIR 47 241 -21 22 35 0 0 chr3 123201940 123201969 -104322609 + AT_rich Low_complexity Low_complexity 1 29 0 2132 63 0 0 chr3 123203380 123203633 -104320945 - AluY SINE Alu -11 300 48 785 167 0 29 chr3 123203710 123203848 -104320730 - AluJo SINE Alu -176 136 3 321 296 32 72 chr3 123203954 123204079 -104320499 + L2 LINE L2 3193 3312 -1 24 32 0 0 chr3 123205275 123205306 -104319272 + AT_rich Low_complexity Low_complexity 1 31 0 1100 254 197 42 chr3 123205785 123206359 -104318219 + L2 LINE L2 2313 2975 -339 622 300 56 44 chr3 123206381 123206651 -104317927 + MLT1F LTR MaLR 1 273 -269 2676 147 18 26 chr3 123206656 123207152 -104317426 + L1PA16 LINE L1 5673 6164 -2 423 231 32 70 chr3 123207154 123207234 -104317344 + L2 LINE L2 3141 3214 -99 2265 109 3 3 chr3 123207234 123207546 -104317032 - AluSx SINE Alu 0 312 1 423 231 32 70 chr3 123207546 123207621 -104316957 + L2 LINE L2 3214 3290 -23 396 276 153 25 chr3 123207721 123207884 -104316694 - MIR SINE MIR -74 188 5 194 213 149 0 chr3 123208274 123208321 -104316257 - MIR3 SINE MIR 0 208 155 252 275 61 84 chr3 123209007 123209138 -104315440 + MIR SINE MIR 124 251 -11 3063 131 10 18 chr3 123209170 123209674 -104314904 - L1PB1 LINE L1 0 6151 5652 2113 124 3 0 chr3 123209834 123210133 -104314445 + AluSx SINE Alu 1 300 -12 245 161 36 0 chr3 123210187 123210243 -104314335 + (TA)n Simple_repeat Simple_repeat 2 59 0 892 291 138 33 chr3 123261867 123262318 -104262260 - L2 LINE L2 -363 2951 2454 1687 153 0 30 chr3 123262354 123262649 -104261929 + AluJo SINE Alu 1 286 -26 225 108 0 0 chr3 123263198 123263235 -104261343 + (A)n Simple_repeat Simple_repeat 1 37 0 196 206 98 87 chr3 123264671 123264763 -104259815 + L3 LINE CR1 1288 1380 -197 2653 143 39 5 chr3 123266285 123266699 -104257879 + MSTC LTR MaLR 1 428 0 269 236 27 64 chr3 123267298 123267408 -104257170 + MLT1L LTR MaLR 510 615 0 320 224 0 13 chr3 123267902 123267978 -104256600 - LTR33A LTR ERVL -8 515 441 312 119 0 0 chr3 123268215 123268274 -104256304 + (CAGAGA)n Simple_repeat Simple_repeat 2 60 0 569 318 60 51 chr3 123268532 123268979 -104255599 - L2 LINE L2 -218 3054 2613 262 111 0 32 chr3 123269142 123269205 -104255373 + (TCTCCC)n Simple_repeat Simple_repeat 1 61 0 6676 70 16 26 chr3 123269205 123271014 -104253564 + SVA Other Other 1 1386 0 2402 94 0 0 chr3 123272424 123272722 -104251856 + AluSg SINE Alu 2 299 -11 2455 114 15 89 chr3 123272726 123273207 -104251371 - MER65A LTR ERV1 0 445 1 25 31 0 0 chr3 123273272 123273304 -104251274 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 123274327 123274348 -104250230 + AT_rich Low_complexity Low_complexity 1 21 0 2424 133 3 6 chr3 123274754 123275116 -104249462 - THE1B LTR MaLR -1 363 3 1862 112 86 4 chr3 123275897 123276175 -104248403 + AluSx SINE Alu 3 303 -9 1797 185 15 50 chr3 123276254 123276654 -104247924 + MLT1B LTR MaLR 5 390 0 2435 103 0 0 chr3 123278357 123278668 -104245910 - AluSx SINE Alu -1 311 1 346 350 36 75 chr3 123279178 123279458 -104245120 - L2 LINE L2 0 3272 3004 1923 72 4 15 chr3 123279948 123280212 -104244366 + L1PA8 LINE L1 5912 6172 0 2146 113 14 0 chr3 123280779 123281071 -104243507 - AluSx SINE Alu -16 296 1 24 32 0 0 chr3 123281071 123281102 -104243476 + AT_rich Low_complexity Low_complexity 1 31 0 1366 199 24 3 chr3 123281105 123281401 -104243177 - L1MC/D LINE L1 -431 5811 5510 234 0 0 0 chr3 123281906 123281932 -104242646 + (TG)n Simple_repeat Simple_repeat 1 26 0 310 182 0 0 chr3 123282439 123282494 -104242084 + L1MC4 LINE L1 6649 6703 -1339 182 326 42 11 chr3 123282673 123282768 -104241810 - MIR SINE MIR -61 147 50 184 329 79 26 chr3 123283508 123283584 -104240994 - MIR SINE MIR -66 142 63 332 317 56 43 chr3 123283829 123283990 -104240588 - MIR SINE MIR -44 218 56 1234 205 61 14 chr3 123285058 123285351 -104239227 - MER61A LTR ERV1 -36 307 1 2236 116 0 3 chr3 123285813 123286123 -104238455 - AluSx SINE Alu -3 309 1 251 238 0 75 chr3 123286282 123286429 -104238149 + CT-rich Low_complexity Low_complexity 1 136 0 2113 125 3 0 chr3 123286586 123286874 -104237704 + AluSx SINE Alu 5 293 -19 21 0 0 0 chr3 123287127 123287148 -104237430 + AT_rich Low_complexity Low_complexity 1 21 0 352 360 68 0 chr3 123288525 123288672 -104235906 - MIR3 SINE MIR -15 193 37 405 270 34 22 chr3 123289109 123289265 -104235313 + MIR SINE MIR 8 145 -63 249 331 73 0 chr3 123289919 123290055 -104234523 + L2 LINE L2 2554 2699 -615 1929 171 24 33 chr3 123290068 123290489 -104234089 + L1MB4 LINE L1 5759 6175 -5 235 220 0 0 chr3 123291214 123291264 -104233314 + MER96 DNA MER1_type? 1 50 -125 * 334 211 141 0 chr3 123291260 123291331 -104233247 - MER96 DNA MER1_type? -93 82 2 2160 235 50 11 chr3 123291379 123291899 -104232679 - MLT1F LTR MaLR -2 540 1 23 0 0 0 chr3 123291997 123292020 -104232558 + AT_rich Low_complexity Low_complexity 1 23 0 345 317 204 0 chr3 123292812 123292979 -104231599 - MIR SINE MIR -15 247 47 227 336 88 68 chr3 123293488 123293842 -104230736 + L2 LINE L2 2909 3269 -3 281 287 114 30 chr3 123294347 123294514 -104230064 + L2 LINE L2 2723 2903 -411 1903 146 13 0 chr3 123294820 123295122 -104229456 - AluSx SINE Alu 0 312 7 643 245 125 0 chr3 123295273 123295355 -104229223 - MLT1D LTR MaLR -2 503 433 1959 104 4 29 chr3 123295355 123295634 -104228944 - AluSg SINE Alu -17 293 22 643 245 125 0 chr3 123295634 123295759 -104228819 - MLT1D LTR MaLR -72 433 270 536 198 9 9 chr3 123295778 123295884 -104228694 - MLT1D LTR MaLR -399 106 1 1084 171 4 57 chr3 123295937 123296031 -104228547 + MER46A DNA MER2_type 4 101 -2630 2351 86 0 7 chr3 123296031 123296335 -104228243 + AluSp SINE Alu 1 302 -11 1084 171 4 57 chr3 123296335 123296486 -104228092 + MER46A DNA MER2_type 101 236 0 2191 118 0 10 chr3 123296679 123296993 -104227585 + AluSx SINE Alu 1 311 -1 24 32 0 0 chr3 123297009 123297040 -104227538 + AT_rich Low_complexity Low_complexity 1 31 0 210 37 0 0 chr3 123297724 123297751 -104226827 + (TTTAA)n Simple_repeat Simple_repeat 1 27 0 704 280 64 12 chr3 123298947 123299197 -104225381 + L1MC4 LINE L1 6733 6995 -1047 822 184 0 27 chr3 123299260 123299407 -104225171 + FLAM_C SINE Alu 1 143 0 3496 131 9 0 chr3 123299495 123300052 -104224526 - L1PB3 LINE L1 -1 6153 5592 2081 124 3 13 chr3 123300112 123300410 -104224168 - AluSg SINE Alu -15 295 1 582 246 127 113 chr3 123300432 123300506 -104224072 + L1MC4 LINE L1 7098 7169 -873 1931 130 34 10 chr3 123300506 123300798 -104223780 + AluSx SINE Alu 3 301 -11 582 246 127 113 chr3 123300798 123301041 -104223537 + L1MC4 LINE L1 7169 7407 -635 2541 95 3 11 chr3 123301041 123301399 -104223179 - THE1A LTR MaLR 0 355 1 11497 93 17 6 chr3 123301399 123302961 -104221617 - THE1A-int LTR MaLR 0 1580 1 2586 78 8 22 chr3 123302961 123303003 -104221575 - THE1A LTR MaLR 0 355 314 2291 126 0 0 chr3 123303003 123303305 -104221273 + AluSx SINE Alu 1 302 -10 2586 78 8 22 chr3 123303305 123303622 -104220956 - THE1A LTR MaLR -41 314 1 582 246 127 113 chr3 123303622 123304022 -104220556 + L1MC4 LINE L1 7407 7800 -242 2154 97 6 34 chr3 123304022 123304342 -104220236 + AluSp SINE Alu 1 311 -2 582 246 127 113 chr3 123304342 123304353 -104220225 + L1MC4 LINE L1 7800 7809 -233 2117 111 7 24 chr3 123304353 123304651 -104219927 + AluSg SINE Alu 1 293 -17 582 246 127 113 chr3 123304651 123304848 -104219730 + L1MC4 LINE L1 7809 8041 -1 3539 179 33 61 chr3 123304859 123305271 -104219307 + L1MB7 LINE L1 5215 5637 -547 2332 89 3 0 chr3 123305271 123305564 -104219014 + AluSg SINE Alu 1 294 -16 3539 179 33 61 chr3 123305564 123306115 -104218463 + L1MB7 LINE L1 5637 6150 -34 331 333 30 7 chr3 123306980 123307115 -104217463 + MIR SINE MIR 1 138 -124 2429 84 0 3 chr3 123307939 123308238 -104216340 - AluSq SINE Alu -15 298 1 2399 95 0 0 chr3 123308674 123308980 -104215598 - AluY SINE Alu -5 306 1 1435 243 3 6 chr3 123309009 123309322 -104215256 + AluJo SINE Alu 1 312 0 233 211 122 44 chr3 123309332 123309422 -104215156 - L2 LINE L2 -814 2500 2404 2264 113 126 5 chr3 123309599 123309981 -104214597 + MSTA LTR MaLR 1 428 0 300 289 132 80 chr3 123310184 123310609 -104213969 + MLT1L LTR MaLR 151 597 -18 2206 121 3 0 chr3 123310673 123310970 -104213608 - AluSx SINE Alu -9 303 6 687 246 121 5 chr3 123311256 123311455 -104213123 - MIR SINE MIR -1 261 40 1871 177 39 39 chr3 123311710 123311787 -104212791 - MLT2A2 LTR ERVL 0 554 479 1651 85 0 14 chr3 123311787 123311998 -104212580 + AluSg/x SINE Alu 81 288 -22 1871 177 39 39 chr3 123311998 123312476 -104212102 - MLT2A2 LTR ERVL -75 479 1 763 258 75 23 chr3 123313463 123313850 -104210728 - HAL1 LINE L1 -44 2463 2057 480 299 75 4 chr3 123313948 123314189 -104210389 - HAL1 LINE L1 -619 1888 1631 1421 181 36 58 chr3 123314209 123314368 -104210210 - AluJo SINE Alu -10 302 152 2300 91 0 23 chr3 123314368 123314677 -104209901 - AluSc SINE Alu -5 304 3 1421 181 36 58 chr3 123314677 123314826 -104209752 - AluJo SINE Alu -160 152 1 201 329 24 24 chr3 123314832 123314914 -104209664 + L2 LINE L2 2991 3072 -200 215 233 0 0 chr3 123314942 123314985 -104209593 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 257 228 139 0 chr3 123314985 123315064 -104209514 - L2 LINE L2 0 3313 3224 857 349 89 2 chr3 123315085 123315532 -104209046 - L2 LINE L2 -1217 2097 1612 543 282 57 29 chr3 123315735 123315878 -104208700 + MIR SINE MIR 47 199 -63 1594 165 0 15 chr3 123315878 123316139 -104208439 + AluJb SINE Alu 1 257 -55 543 282 57 29 chr3 123316139 123316204 -104208374 + MIR SINE MIR 199 261 -1 1687 103 55 82 chr3 123316819 123316961 -104207617 + AluSx SINE Alu 1 145 -168 2017 84 13 57 chr3 123316961 123317260 -104207318 + AluSc SINE Alu 1 286 -23 1687 103 55 82 chr3 123317260 123317438 -104207140 + AluSx SINE Alu 145 313 0 209 297 20 101 chr3 123317817 123317914 -104206664 - MIR3 SINE MIR -1 207 124 1386 233 117 35 chr3 123317914 123318394 -104206184 - LTR40a LTR ERVL 0 519 1 209 297 20 101 chr3 123318394 123318444 -104206134 - MIR3 SINE MIR -84 124 72 1563 235 41 90 chr3 123318539 123319096 -104205482 + MLT1E LTR MaLR 64 593 0 2480 53 0 3 chr3 123319099 123319398 -104205180 + AluY SINE Alu 4 301 -10 222 115 58 0 chr3 123320057 123320109 -104204469 + GA-rich Low_complexity Low_complexity 2 56 0 1070 117 0 17 chr3 123320109 123320289 -104204289 + (GGAGAA)n Simple_repeat Simple_repeat 4 180 0 2063 138 7 0 chr3 123320518 123320809 -104203769 + AluSx SINE Alu 10 302 -10 1591 210 10 3 chr3 123321493 123321793 -104202785 + AluJo SINE Alu 1 302 -10 446 240 40 0 chr3 123321889 123322014 -104202564 + L1MEc LINE L1 1665 1794 -4602 244 169 14 14 chr3 123322074 123322102 -104202476 + (TA)n Simple_repeat Simple_repeat 2 29 -43 1698 125 0 20 chr3 123322102 123322350 -104202228 + AluSx SINE Alu 44 286 -26 244 169 14 14 chr3 123322350 123322392 -104202186 + (TA)n Simple_repeat Simple_repeat 28 72 0 375 290 74 45 chr3 123322397 123322573 -104202005 + L1MEc LINE L1 1899 2079 -4317 1804 256 72 46 chr3 123322641 123323815 -104200763 + L1MEc LINE L1 2417 3620 -2595 1256 220 90 19 chr3 123323817 123324195 -104200383 - MLT1D LTR MaLR -100 405 1 437 209 33 159 chr3 123324256 123324341 -104200237 - L1MC5 LINE L1 -183 7778 7684 792 210 25 0 chr3 123324341 123324503 -104200075 + FRAM SINE Alu 1 166 0 437 209 33 159 chr3 123324503 123324558 -104200020 - L1MC5 LINE L1 -277 7684 7624 1784 155 3 7 chr3 123324558 123324842 -104199736 + AluJb SINE Alu 4 286 -26 437 209 33 159 chr3 123324842 123325001 -104199577 - L1MC5 LINE L1 -337 7624 7516 26 0 0 0 chr3 123325026 123325052 -104199526 + AT_rich Low_complexity Low_complexity 1 26 0 207 303 0 45 chr3 123325266 123325355 -104199223 - L2 LINE L2 -1 3271 3187 202 352 48 19 chr3 123325407 123325512 -104199066 + L2 LINE L2 3149 3256 -16 588 29 0 0 chr3 123326515 123326585 -104197993 + (CAT)n Simple_repeat Simple_repeat 1 70 0 285 194 32 0 chr3 123326585 123326647 -104197931 + MER5A DNA MER1_type 49 112 -77 2395 69 3 0 chr3 123326665 123326955 -104197623 + AluY SINE Alu 1 291 -20 1993 115 4 4 chr3 123326961 123327239 -104197339 + AluSx SINE Alu 1 278 -34 22 0 0 0 chr3 123329519 123329541 -104195037 + AT_rich Low_complexity Low_complexity 1 22 0 353 56 74 0 chr3 123329552 123329606 -104194972 - MLT2C2 LTR ERVL 0 464 407 * 2142 167 52 15 chr3 123329602 123329726 -104194852 - MER47B DNA MER2_type -1906 417 299 1811 135 130 51 chr3 123329726 123329783 -104194795 + MSTA LTR MaLR 1 52 -376 2460 92 3 0 chr3 123329783 123330087 -104194491 + AluSp SINE Alu 1 305 -8 1811 135 130 51 chr3 123330087 123330422 -104194156 + MSTA LTR MaLR 52 424 -4 2142 167 52 15 chr3 123330422 123330699 -104193879 - MER47B DNA MER2_type -2024 299 1 1035 254 26 7 chr3 123330704 123331011 -104193567 - MLT2D LTR ERVL -48 366 54 238 302 87 8 chr3 123331527 123331653 -104192925 - MIR SINE MIR -10 252 117 467 231 181 41 chr3 123331693 123331720 -104192858 + MIR SINE MIR 11 33 -229 1857 146 3 14 chr3 123331720 123332008 -104192570 + AluSx SINE Alu 1 285 -27 467 231 181 41 chr3 123332008 123332201 -104192377 + MIR SINE MIR 33 262 0 390 335 76 58 chr3 123332369 123332644 -104191934 - L2 LINE L2 0 3272 2993 974 83 0 0 chr3 123332765 123332886 -104191692 + AluY SINE Alu 173 293 -18 1324 175 71 62 chr3 123332910 123333247 -104191331 - MER2 DNA MER2_type 0 345 6 31 26 0 0 chr3 123333938 123333976 -104190602 + AT_rich Low_complexity Low_complexity 1 38 0 199 259 0 56 chr3 123334303 123334357 -104190221 + MIR SINE MIR 3 53 -209 1725 175 0 26 chr3 123334465 123334774 -104189804 - AluJo SINE Alu -7 305 5 181 259 89 71 chr3 123334993 123335105 -104189473 - L2 LINE L2 -17 3255 3142 339 357 49 33 chr3 123335201 123335445 -104189133 + L2 LINE L2 2830 3077 -236 600 217 0 127 chr3 123335445 123335531 -104189047 - MLT1E2 LTR MaLR 0 505 410 701 209 8 0 chr3 123335531 123335660 -104188918 - FLAM_C SINE Alu -3 130 1 600 217 0 127 chr3 123335660 123335794 -104188784 - MLT1E2 LTR MaLR -95 410 313 411 157 22 11 chr3 123335799 123335888 -104188690 - MER34B LTR ERV1 -6 559 470 1020 127 38 196 chr3 123335940 123336071 -104188507 - MER44D DNA MER2_type -1882 605 455 2075 135 143 11 chr3 123336071 123336449 -104188129 - MSTA LTR MaLR 0 428 1 1020 127 38 196 chr3 123336449 123336642 -104187936 - MER44D DNA MER2_type -2032 455 233 2177 134 0 7 chr3 123336642 123336947 -104187631 - AluSx SINE Alu -9 303 1 1020 127 38 196 chr3 123336947 123337031 -104187547 - MER44D DNA MER2_type -2254 233 1 553 253 54 21 chr3 123337034 123337373 -104187205 - MER34B LTR ERV1 -159 406 10 909 241 75 24 chr3 123337377 123337672 -104186906 - MLT1E2 LTR MaLR -314 312 3 506 151 0 21 chr3 123337711 123337804 -104186774 - AluJo SINE Alu -6 306 216 * 662 183 92 8 chr3 123337801 123337932 -104186646 - AluJo SINE Alu -170 142 1 221 310 42 0 chr3 123338063 123338134 -104186444 + L2 LINE L2 3197 3270 -43 185 0 0 39 chr3 123338151 123338177 -104186401 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 2599 58 3 0 chr3 123338825 123339135 -104185443 - AluY SINE Alu 0 311 1 21994 141 18 62 chr3 123339135 123340319 -104184259 - L1P3 LINE L1 -1034 5427 4192 2011 102 23 56 chr3 123340319 123340624 -104183954 - AluSg1 SINE Alu -14 295 1 21994 141 18 62 chr3 123340624 123342620 -104181958 - L1P3 LINE L1 -2269 4192 2345 1226 112 6 0 chr3 123342620 123342781 -104181797 - AluSp SINE Alu -17 296 135 21994 141 18 62 chr3 123342781 123344289 -104180289 - L1P3 LINE L1 -4116 2345 771 2221 197 30 10 chr3 123344289 123344786 -104179792 - L1P3 LINE L1 -5367 508 2 2347 105 0 0 chr3 123344970 123345276 -104179302 + AluSx SINE Alu 1 306 -6 268 313 105 61 chr3 123345278 123345952 -104178626 - L1MC4a LINE L1 -1220 6588 5885 335 250 62 14 chr3 123345996 123346140 -104178438 - L1MC5 LINE L1 -44 7917 7767 * 3103 180 46 49 chr3 123346137 123346557 -104178021 - L1MB3 LINE L1 -196 5987 5567 2101 212 114 70 chr3 123346557 123347348 -104177230 - LTR1B LTR ERV1 0 826 1 3103 180 46 49 chr3 123347348 123347540 -104177038 - L1MB3 LINE L1 -616 5567 5376 2079 130 0 16 chr3 123347540 123347847 -104176731 - AluSq SINE Alu -11 302 1 3103 180 46 49 chr3 123347847 123348171 -104176407 - L1MB3 LINE L1 -807 5376 5049 1185 141 6 0 chr3 123348184 123348380 -104176198 - AluSg/x SINE Alu 0 310 114 345 164 0 0 chr3 123348380 123348435 -104176143 - AluS SINE Alu -238 63 9 25 0 0 0 chr3 123349695 123349720 -104174858 + AT_rich Low_complexity Low_complexity 1 25 0 719 208 16 0 chr3 123350375 123350500 -104174078 + FLAM_A SINE Alu 1 127 -6 492 265 37 30 chr3 123350762 123351023 -104173555 - L1MC4a LINE L1 -2025 5783 5523 331 330 39 0 chr3 123351110 123351213 -104173365 + L2 LINE L2 3202 3308 -5 2013 152 0 0 chr3 123351573 123351869 -104172709 - AluJb SINE Alu -16 296 1 302 306 156 19 chr3 123352170 123352330 -104172248 + MIR SINE MIR 3 184 -78 292 325 29 127 chr3 123352333 123352641 -104171937 + L2 LINE L2 2995 3272 0 507 59 0 0 chr3 123353528 123353596 -104170982 + L1MA5A LINE L1 6165 6232 -65 539 117 29 58 chr3 123353662 123353728 -104170850 - U6 snRNA snRNA -6 101 38 5292 158 92 12 chr3 123353728 123354672 -104169906 + LTR28 LTR ERV1 1 1020 0 539 117 29 58 chr3 123354672 123354708 -104169870 - U6 snRNA snRNA -69 38 2 2175 116 3 0 chr3 123354776 123355077 -104169501 - AluSq SINE Alu -11 302 1 4735 147 37 23 chr3 123355160 123356516 -104168062 - L1PA16 LINE L1 0 6166 4794 26 30 0 0 chr3 123356573 123356606 -104167972 + AT_rich Low_complexity Low_complexity 1 33 0 1950 157 23 3 chr3 123356918 123357218 -104167360 + AluSx SINE Alu 1 306 -6 450 229 21 109 chr3 123357550 123357742 -104166836 + MIR SINE MIR 88 262 0 224 246 0 92 chr3 123357790 123357855 -104166723 - MIR SINE MIR 0 262 204 225 0 0 0 chr3 123357879 123357904 -104166674 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 3810 49 2 2 chr3 123357905 123358376 -104166202 - L1PA6 LINE L1 -11 6143 5673 11464 122 18 19 chr3 123358377 123360282 -104164296 - L1P LINE L1 -4231 1915 14 1588 173 10 34 chr3 123360381 123360676 -104163902 - AluSx SINE Alu -24 288 1 395 371 46 10 chr3 123360678 123360872 -104163706 - MIR SINE MIR -46 216 16 244 386 36 50 chr3 123361545 123361685 -104162893 - L2 LINE L2 -1 3271 3134 322 318 74 78 chr3 123362155 123362413 -104162165 - L2 LINE L2 -176 3096 2840 269 261 0 15 chr3 123362509 123362574 -104162004 - L2 LINE L2 -1 3312 3249 263 333 44 44 chr3 123362587 123362746 -104161832 - MIR3 SINE MIR -36 172 14 243 236 24 121 chr3 123362746 123362911 -104161667 + LTR16B LTR ERVL 1 149 -315 348 304 146 9 chr3 123363234 123363685 -104160893 + L1MC4a LINE L1 4061 4573 -1573 23 33 0 0 chr3 123363878 123363908 -104160670 + AT_rich Low_complexity Low_complexity 1 30 0 257 210 0 43 chr3 123364054 123364139 -104160439 + L1MC4a LINE L1 4905 4986 -1160 218 309 0 0 chr3 123364197 123364252 -104160326 + (TG)n Simple_repeat Simple_repeat 2 56 0 1127 283 52 39 chr3 123364457 123365075 -104159503 + L1MC4a LINE L1 5284 5909 -1899 237 229 145 23 chr3 123366439 123366570 -104158008 - L1ME4a LINE L1 -1 6120 5974 2278 111 0 3 chr3 123367544 123367850 -104156728 + AluSx SINE Alu 1 305 -7 265 225 188 0 chr3 123368309 123368389 -104156189 - MIR3 SINE MIR -21 187 93 322 309 181 35 chr3 123368598 123368880 -104155698 - L2 LINE L2 0 3313 2991 215 162 59 0 chr3 123368976 123369044 -104155534 + (TA)n Simple_repeat Simple_repeat 1 72 0 1648 150 55 15 chr3 123369044 123369318 -104155260 - AluSx SINE Alu -27 285 1 2138 100 7 0 chr3 123369425 123369704 -104154874 - AluSx SINE Alu -22 290 10 494 324 79 32 chr3 123369732 123370010 -104154568 - L2 LINE L2 -640 2674 2384 1001 280 166 24 chr3 123370286 123371004 -104153574 - L2 LINE L2 -942 2372 1553 688 244 87 41 chr3 123371466 123371708 -104152870 - MIR SINE MIR 0 262 10 944 255 81 20 chr3 123371746 123372044 -104152534 - MLT1G1 LTR MaLR -207 388 73 532 211 14 0 chr3 123372070 123372212 -104152366 + MER69 DNA AcHobo 2362 2505 -21 2287 100 0 0 chr3 123372482 123372772 -104151806 - AluSg SINE Alu -20 290 1 20472 20 0 0 chr3 123372987 123376143 -104148435 - L1HS LINE L1 0 6155 3001 36060 35 30 2 chr3 123376255 123380600 -104143978 - L1P LINE L1 -1676 4470 1 238 242 146 73 chr3 123382112 123382331 -104142247 - L1ME4a LINE L1 -5 6116 5882 684 224 16 47 chr3 123382344 123382536 -104142042 - L1MC4 LINE L1 -10 8032 7847 26 30 0 0 chr3 123382537 123382570 -104142008 + AT_rich Low_complexity Low_complexity 1 33 0 826 169 0 0 chr3 123382570 123382694 -104141884 - FLAM_C SINE Alu -19 124 1 4956 50 7 0 chr3 123382737 123383315 -104141263 + L1PA7 LINE L1 5558 6139 -15 261 75 57 0 chr3 123383315 123383368 -104141210 + (TA)n Simple_repeat Simple_repeat 1 56 0 211 169 0 34 chr3 123383869 123383928 -104140650 + GA-rich Low_complexity Low_complexity 2 58 0 369 282 166 25 chr3 123385009 123385250 -104139328 + L2 LINE L2 2823 3097 -216 263 111 0 22 chr3 123385250 123385295 -104139283 + LTR54 LTR ERV1 399 442 -68 235 348 71 29 chr3 123385332 123385542 -104139036 + L2 LINE L2 3095 3313 0 398 126 77 7 chr3 123386276 123386526 -104138052 + (TA)n Simple_repeat Simple_repeat 1 232 -275 1597 23 0 0 chr3 123386526 123386700 -104137878 - L1PA4 LINE L1 -4 6151 5978 398 126 77 7 chr3 123386700 123386750 -104137828 + (TA)n Simple_repeat Simple_repeat 232 507 0 314 242 58 83 chr3 123386799 123386919 -104137659 - MIR3 SINE MIR -82 126 10 683 227 26 122 chr3 123387010 123387353 -104137225 - MER51C LTR ERV1 -27 613 304 2257 117 3 0 chr3 123387782 123388091 -104136487 - AluSx SINE Alu -2 310 1 2277 92 7 0 chr3 123388129 123388465 -104136113 - AluSp SINE Alu 0 313 1 944 248 49 80 chr3 123388503 123388830 -104135748 - MLT1J LTR MaLR -53 458 142 245 128 21 0 chr3 123389016 123389063 -104135515 + (TAGA)n Simple_repeat Simple_repeat 3 50 0 273 98 0 0 chr3 123389090 123389131 -104135447 + (CA)n Simple_repeat Simple_repeat 2 42 0 218 189 113 0 chr3 123389209 123389262 -104135316 + L2 LINE L2 3214 3272 0 2174 92 0 0 chr3 123389283 123389619 -104134959 + AluSg SINE Alu 1 336 0 2057 99 15 22 chr3 123389711 123390053 -104134525 - MER4A LTR ERV1 0 664 261 719 80 0 20 chr3 123390053 123390153 -104134425 - MER4A LTR ERV1 -566 98 1 366 290 43 36 chr3 123390227 123390365 -104134213 + MER91A DNA MER1_type 53 191 -5 2224 125 3 0 chr3 123390610 123390914 -104133664 + AluSx SINE Alu 1 305 -7 434 267 164 44 chr3 123391971 123392428 -104132150 - L1ME4a LINE L1 -80 6041 5530 346 175 0 41 chr3 123392430 123392527 -104132051 + CT-rich Low_complexity Low_complexity 3 95 0 265 289 220 13 chr3 123393470 123393629 -104130949 + L2 LINE L2 2240 2431 -883 369 295 86 100 chr3 123393683 123393836 -104130742 + L2 LINE L2 2628 2782 -490 1970 171 31 34 chr3 123393836 123394251 -104130327 - L1MB4 LINE L1 -2 6178 5765 369 295 86 100 chr3 123394251 123394276 -104130302 + L2 LINE L2 2782 2806 -466 2385 105 0 0 chr3 123394276 123394580 -104129998 - AluSq SINE Alu -9 304 1 369 295 86 100 chr3 123394580 123394846 -104129732 + L2 LINE L2 2806 3059 -213 948 244 6 0 chr3 123395000 123395168 -104129410 - FAM SINE Alu -6 169 1 1584 234 143 26 chr3 123395507 123396011 -104128567 + L1ME1 LINE L1 5583 6145 -21 221 0 35 0 chr3 123396015 123396044 -104128534 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 580 292 153 19 chr3 123396057 123396266 -104128312 + MIR SINE MIR 26 262 0 186 71 0 0 chr3 123396992 123397020 -104127558 + (TTG)n Simple_repeat Simple_repeat 3 30 0 1381 260 100 43 chr3 123397042 123397161 -104127417 - L2 LINE L2 -1 3312 3201 2276 121 0 0 chr3 123397161 123397468 -104127110 + AluSx SINE Alu 1 307 -5 1381 260 100 43 chr3 123397468 123397911 -104126667 - L2 LINE L2 -112 3201 2679 2008 131 24 0 chr3 123397911 123398208 -104126370 - AluSq SINE Alu -9 304 1 1381 260 100 43 chr3 123398208 123398450 -104126128 - L2 LINE L2 -634 2679 2452 1221 102 0 38 chr3 123398465 123398651 -104125927 - L1MC/D LINE L1 -770 5589 5411 697 135 135 0 chr3 123398700 123398826 -104125752 + L1MB7 LINE L1 6026 6168 -16 4073 269 76 40 chr3 123398828 123399643 -104124935 - L2 LINE L2 -845 2469 1685 2510 57 0 28 chr3 123399643 123399961 -104124617 - AluY SINE Alu -2 309 1 4073 269 76 40 chr3 123399961 123400680 -104123898 - L2 LINE L2 -1629 1685 879 183 80 0 0 chr3 123401307 123401332 -104123246 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 183 332 93 53 chr3 123401485 123401711 -104122867 + L2 LINE L2 2873 3107 -165 191 303 15 15 chr3 123402461 123402527 -104122051 + L2 LINE L2 3207 3272 0 308 355 37 42 chr3 123402536 123402725 -104121853 - MIR3 SINE MIR -2 206 19 633 193 99 47 chr3 123403517 123403653 -104120925 + MER58C DNA MER1_type 26 174 -2246 2882 72 119 5 chr3 123403653 123404055 -104120523 + LTR7 LTR ERV1 1 448 -2 633 193 99 47 chr3 123404055 123404089 -104120489 + MER58C DNA MER1_type 174 205 -10 1474 46 0 0 chr3 123404089 123404262 -104120316 - L1PA4 LINE L1 -206 5949 5777 1689 53 10 5 chr3 123404262 123404456 -104120122 + L1PA4 LINE L1 5949 6155 0 4942 91 9 3 chr3 123406091 123406731 -104117847 - L1PA11 LINE L1 -7 6167 5524 554 319 64 20 chr3 123407906 123408201 -104116377 + HAL1 LINE L1 140 447 -2060 2466 91 0 0 chr3 123408203 123408512 -104116066 + AluSc SINE Alu 1 309 0 484 283 113 67 chr3 123408593 123408876 -104115702 + HAL1 LINE L1 557 852 -1655 267 250 0 0 chr3 123409315 123409379 -104115199 + (TG)n Simple_repeat Simple_repeat 1 64 0 2640 184 22 38 chr3 123409910 123410460 -104114118 + MER74A LTR ERVL 4 544 -14 280 294 11 11 chr3 123410833 123410925 -104113653 + L3 LINE CR1 1404 1495 -82 322 174 395 9 chr3 123410938 123411047 -104113531 - MER5A DNA MER1_type -30 159 9 928 156 0 15 chr3 123411356 123411491 -104113087 + FLAM_C SINE Alu 1 133 0 2279 125 0 0 chr3 123411694 123412006 -104112572 - AluSx SINE Alu 0 312 1 317 231 2 66 chr3 123412460 123412568 -104112010 - MIR3 SINE MIR -5 203 102 616 150 16 0 chr3 123412571 123412698 -104111880 + CT-rich Low_complexity Low_complexity 3 131 0 909 258 77 22 chr3 123413114 123413517 -104111061 + HAL1 LINE L1 2057 2481 -26 2068 168 39 39 chr3 123414487 123414965 -104109613 + MLT2A2 LTR ERVL 1 479 -75 1654 85 0 14 chr3 123414965 123415176 -104109402 - AluSg/x SINE Alu -22 288 81 2068 168 39 39 chr3 123415176 123415253 -104109325 + MLT2A2 LTR ERVL 479 554 0 668 243 7 0 chr3 123415508 123415656 -104108922 + MIR SINE MIR 40 188 -74 2275 119 0 0 chr3 123415993 123416295 -104108283 + AluSx SINE Alu 6 307 -5 363 291 48 18 chr3 123416359 123416524 -104108054 - MLT1L LTR MaLR -18 597 428 2492 107 126 5 chr3 123416987 123417369 -104107209 - MSTA LTR MaLR 0 428 1 231 211 122 44 chr3 123417544 123417634 -104106944 + L2 LINE L2 2404 2500 -814 1411 221 7 10 chr3 123417659 123417957 -104106621 - AluJo SINE Alu -15 297 1 2417 92 0 0 chr3 123417986 123418292 -104106286 + AluY SINE Alu 1 306 -5 2410 84 0 3 chr3 123418728 123419025 -104105553 + AluSq SINE Alu 1 296 -17 323 333 30 7 chr3 123419847 123419982 -104104596 - MIR SINE MIR -124 138 1 3943 178 33 61 chr3 123420847 123421398 -104103180 - L1MB7 LINE L1 -34 6150 5637 2385 85 3 0 chr3 123421398 123421692 -104102886 - AluSg SINE Alu -15 295 1 3943 178 33 61 chr3 123421692 123422104 -104102474 - L1MB7 LINE L1 -547 5637 5215 839 279 115 37 chr3 123422108 123422312 -104102266 - L1MC5 LINE L1 -30 7931 7744 2124 107 7 24 chr3 123422312 123422610 -104101968 - AluSg SINE Alu -17 293 1 839 279 115 37 chr3 123422610 123422621 -104101957 - L1MC5 LINE L1 -217 7744 7735 2271 101 6 22 chr3 123422621 123422937 -104101641 - AluSp SINE Alu -2 311 1 839 279 115 37 chr3 123422937 123423336 -104101242 - L1MC5 LINE L1 -226 7735 7268 2765 78 8 22 chr3 123423337 123423654 -104100924 + THE1A LTR MaLR 1 314 -41 2288 126 0 0 chr3 123423654 123423956 -104100622 - AluSx SINE Alu -10 302 1 2765 78 8 22 chr3 123423956 123423998 -104100580 + THE1A LTR MaLR 314 355 0 11613 92 18 7 chr3 123423998 123425561 -104099017 + THE1A-int LTR MaLR 1 1580 0 2583 95 3 11 chr3 123425561 123425919 -104098659 + THE1A LTR MaLR 1 355 0 517 266 89 43 chr3 123425955 123426162 -104098416 - L1MC4 LINE L1 -650 7392 7167 2060 126 31 0 chr3 123426162 123426455 -104098123 - AluSx SINE Alu -8 304 3 517 266 89 43 chr3 123426455 123426529 -104098049 - L1MC4 LINE L1 -875 7167 7098 2210 102 3 16 chr3 123426551 123426855 -104097723 + AluSg SINE Alu 1 300 -10 2103 129 0 0 chr3 123426857 123427159 -104097419 + AluSg SINE Alu 1 302 -8 1411 181 28 0 chr3 123427469 123427723 -104096855 + AluJo SINE Alu 7 267 -45 741 173 47 0 chr3 123427845 123427972 -104096606 + FLAM_A SINE Alu 1 133 0 1569 111 5 5 chr3 123428134 123428351 -104096227 - AluSx SINE Alu -95 217 1 23 33 0 0 chr3 123428412 123428442 -104096136 + AT_rich Low_complexity Low_complexity 1 30 0 1061 171 4 95 chr3 123428528 123428780 -104095798 - AluJo SINE Alu -83 229 1 298 313 10 0 chr3 123428790 123428889 -104095689 + L1MC5 LINE L1 7733 7832 -129 1044 79 0 21 chr3 123428995 123429135 -104095443 - AluSg/x SINE Alu -11 301 165 2466 82 3 0 chr3 123429259 123429564 -104095014 - AluSq SINE Alu -6 307 2 23 0 0 0 chr3 123429664 123429687 -104094891 + AT_rich Low_complexity Low_complexity 1 23 0 954 194 0 0 chr3 123429708 123429878 -104094700 - FRAM SINE Alu -9 167 1 2249 67 0 73 chr3 123429902 123430229 -104094349 - AluY SINE Alu -8 303 1 2436 95 3 0 chr3 123430309 123430614 -104093964 - AluSp SINE Alu -7 306 1 1287 241 70 21 chr3 123430617 123431045 -104093533 + L1MC4 LINE L1 5526 5974 -2068 2161 115 0 0 chr3 123431045 123431178 -104093400 + AluSg SINE Alu 1 133 -177 2098 124 10 0 chr3 123431178 123431469 -104093109 + AluSg SINE Alu 1 294 -16 2161 115 0 0 chr3 123431469 123431630 -104092948 + AluSg SINE Alu 132 295 -15 1479 110 0 34 chr3 123431630 123431839 -104092739 + AluY SINE Alu 1 202 -109 304 204 34 118 chr3 123432146 123432229 -104092349 - L1ME1 LINE L1 0 6166 6078 2176 64 8 4 chr3 123432229 123432496 -104092082 + AluSp SINE Alu 1 268 -45 304 204 34 118 chr3 123432496 123432508 -104092070 - L1ME1 LINE L1 -88 6078 6067 207 0 0 0 chr3 123432508 123432531 -104092047 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 304 204 34 118 chr3 123432531 123432664 -104091914 - L1ME1 LINE L1 -99 6067 5948 483 209 142 0 chr3 123432680 123432814 -104091764 - MER5A DNA MER1_type -36 153 1 392 55 18 0 chr3 123432832 123432887 -104091691 - AluSp/q SINE Alu -9 294 239 10040 97 14 9 chr3 123433013 123433660 -104090918 - L1PA8A LINE L1 -366 5765 5123 2487 67 3 0 chr3 123433660 123433958 -104090620 - AluY SINE Alu -12 299 1 10040 97 14 9 chr3 123433958 123435142 -104089436 - L1PA8A LINE L1 -1008 5123 3932 2392 57 7 3 chr3 123435142 123435438 -104089140 - AluY SINE Alu -14 297 1 2245 98 0 0 chr3 123435515 123435802 -104088776 - AluSp SINE Alu -26 287 1 336 273 19 65 chr3 123435802 123435885 -104088693 + L1ME LINE L1 5511 5585 -536 1529 191 11 11 chr3 123435885 123436158 -104088420 - AluJo SINE Alu -39 273 1 336 273 19 65 chr3 123436158 123436228 -104088350 + L1ME LINE L1 5585 5657 -464 2400 56 3 13 chr3 123436235 123436537 -104088041 + AluSp SINE Alu 1 299 -14 622 208 39 26 chr3 123436550 123436704 -104087874 - AluJb SINE Alu -20 292 137 31 0 0 24 chr3 123437257 123437274 -104087304 + AT_rich Low_complexity Low_complexity 1 17 -24 1906 138 14 0 chr3 123437274 123437564 -104087014 - AluSx SINE Alu -18 294 1 31 0 0 24 chr3 123437564 123437588 -104086990 + AT_rich Low_complexity Low_complexity 17 41 0 2007 110 4 4 chr3 123438265 123438529 -104086049 + AluSq SINE Alu 1 264 -49 207 0 0 0 chr3 123438544 123438567 -104086011 + (TC)n Simple_repeat Simple_repeat 2 24 0 190 286 143 0 chr3 123438916 123438979 -104085599 + L2 LINE L2 3207 3278 -35 2147 125 10 0 chr3 123440148 123440451 -104084127 + AluSq SINE Alu 1 306 -7 511 108 0 14 chr3 123440645 123440719 -104083859 + AluS SINE Alu 2 74 -238 1672 187 13 7 chr3 123441022 123441332 -104083246 - AluJo SINE Alu 0 312 1 342 326 105 6 chr3 123441343 123441515 -104083063 + Charlie7 DNA MER1_type 9 197 -2415 635 254 4 86 chr3 123441585 123441651 -104082927 + Charlie7 DNA MER1_type 379 449 -2163 2050 142 30 0 chr3 123441651 123441953 -104082625 + AluSx SINE Alu 1 311 -1 635 254 4 86 chr3 123441953 123442015 -104082563 + Charlie7 DNA MER1_type 449 515 -2097 1793 156 49 0 chr3 123442015 123442303 -104082275 - AluJb SINE Alu -10 302 1 635 254 4 86 chr3 123442303 123442441 -104082137 + Charlie7 DNA MER1_type 515 624 -1988 27 73 0 0 chr3 123442456 123442511 -104082067 + AT_rich Low_complexity Low_complexity 1 55 0 2328 71 0 3 chr3 123443070 123443366 -104081212 + AluY SINE Alu 11 305 -6 2327 83 10 10 chr3 123443378 123443691 -104080887 + AluSq SINE Alu 1 313 0 1224 102 0 12 chr3 123443691 123443858 -104080720 + AluSg/x SINE Alu 132 296 -14 615 172 30 37 chr3 123444512 123444646 -104079932 + FLAM_A SINE Alu 1 133 0 1829 149 54 0 chr3 123444713 123445009 -104079569 - AluJb SINE Alu 0 312 1 325 255 78 46 chr3 123445077 123445230 -104079348 - MIR SINE MIR -87 175 18 2054 136 10 7 chr3 123445273 123445581 -104078997 - AluSx SINE Alu -3 309 1 673 121 0 78 chr3 123446263 123446404 -104078174 + FLAM_C SINE Alu 2 131 -12 2400 56 3 13 chr3 123447291 123447593 -104076985 + AluSp SINE Alu 1 299 -14 622 208 39 26 chr3 123447606 123447760 -104076818 - AluJb SINE Alu -20 292 137 32 0 0 23 chr3 123448313 123448330 -104076248 + AT_rich Low_complexity Low_complexity 1 17 -25 1862 138 17 0 chr3 123448330 123448619 -104075959 - AluSx SINE Alu -18 294 1 32 0 0 23 chr3 123448619 123448644 -104075934 + AT_rich Low_complexity Low_complexity 17 42 0 2062 108 7 7 chr3 123448760 123449056 -104075522 + AluSx SINE Alu 1 296 -16 1211 195 107 4 chr3 123449068 123449330 -104075248 + AluJo SINE Alu 5 293 -19 1310 157 82 30 chr3 123449945 123450212 -104074366 - AluJb SINE Alu -18 294 14 2037 138 3 28 chr3 123451110 123451428 -104073150 - AluSx SINE Alu -2 310 1 1689 107 30 0 chr3 123451442 123451676 -104072902 - AluSx SINE Alu -71 241 1 332 131 0 16 chr3 123452330 123452391 -104072187 + (TCCC)n Simple_repeat Simple_repeat 4 63 0 1878 156 30 14 chr3 123452400 123452695 -104071883 - AluJb SINE Alu -12 300 1 662 269 56 30 chr3 123453191 123453388 -104071190 - MER63A DNA MER1_type -4 206 5 917 186 0 0 chr3 123454114 123454259 -104070319 - FRAM SINE Alu -32 144 1 1657 194 70 26 chr3 123454265 123454319 -104070259 - Charlie1b DNA MER1_type -2312 449 399 2001 133 28 0 chr3 123454319 123454604 -104069974 - AluSx SINE Alu -19 293 1 1657 194 70 26 chr3 123454604 123454966 -104069612 - Charlie1b DNA MER1_type -2362 399 15 282 29 0 0 chr3 123454966 123455001 -104069577 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 180 179 0 0 chr3 123455070 123455109 -104069469 + A-rich Low_complexity Low_complexity 1 39 0 27 29 0 0 chr3 123455130 123455164 -104069414 + AT_rich Low_complexity Low_complexity 1 34 0 7955 19 0 2 chr3 123455164 123456454 -104068124 - L1PA3 LINE L1 -3 6152 4864 439 204 10 0 chr3 123456537 123456635 -104067943 - MIR SINE MIR -56 206 108 1809 156 17 0 chr3 123456767 123457055 -104067523 - AluJb SINE Alu -19 293 1 838 70 0 0 chr3 123457351 123457451 -104067127 + AluY SINE Alu 195 294 -17 2018 106 0 4 chr3 123457734 123458009 -104066569 - AluY SINE Alu -5 306 33 437 325 24 6 chr3 123458182 123458351 -104066227 + MIR SINE MIR 21 192 -70 484 297 16 0 chr3 123458426 123458554 -104066024 + MER94 DNA DNA 5 134 0 620 169 151 12 chr3 123458638 123458810 -104065768 - L1MC2 LINE L1 -3 6341 6146 2355 93 0 6 chr3 123459242 123459553 -104065025 + AluY SINE Alu 1 309 -2 185 0 0 39 chr3 123460185 123460211 -104064367 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 196 310 42 0 chr3 123460228 123460299 -104064279 - L2 LINE L2 -43 3270 3197 531 165 54 17 chr3 123460430 123460651 -104063927 + AluJo SINE Alu 1 306 -6 1001 241 75 24 chr3 123460690 123460985 -104063593 + MLT1E2 LTR MaLR 3 312 -314 626 247 54 21 chr3 123460989 123461328 -104063250 + MER34B LTR ERV1 10 406 -159 1110 128 49 193 chr3 123461331 123461415 -104063163 + MER44D DNA MER2_type 1 96 -2391 2216 133 0 7 chr3 123461415 123461724 -104062854 + AluSx SINE Alu 1 307 -5 1110 128 49 193 chr3 123461724 123461918 -104062660 + MER44D DNA MER2_type 96 316 -2171 2124 135 143 11 chr3 123461918 123462296 -104062282 + MSTA LTR MaLR 1 428 0 1110 128 49 193 chr3 123462296 123462427 -104062151 + MER44D DNA MER2_type 316 605 0 436 169 22 11 chr3 123462479 123462568 -104062010 + MER34B LTR ERV1 470 559 -6 671 217 0 127 chr3 123462573 123462707 -104061871 + MLT1E2 LTR MaLR 313 410 -95 700 209 8 0 chr3 123462707 123462836 -104061742 + FLAM_C SINE Alu 1 130 -3 671 217 0 127 chr3 123462836 123462922 -104061656 + MLT1E2 LTR MaLR 410 505 0 248 323 66 49 chr3 123462940 123463166 -104061412 - L2 LINE L2 -254 3059 2830 1712 175 0 26 chr3 123463593 123463902 -104060676 + AluJo SINE Alu 5 305 -7 1769 109 0 0 chr3 123464236 123464466 -104060112 - AluSx SINE Alu -26 286 57 870 104 17 0 chr3 123464467 123464582 -104059996 - AluSq/x SINE Alu -195 117 1 268 333 11 0 chr3 123464591 123464684 -104059894 - MIR SINE MIR -121 141 48 1813 128 4 7 chr3 123465027 123465300 -104059278 - AluSx SINE Alu -1 311 40 1952 87 87 0 chr3 123465356 123465631 -104058947 - AluSg SINE Alu -11 299 1 2478 72 0 0 chr3 123465641 123465945 -104058633 - AluY SINE Alu -7 304 1 2135 123 0 3 chr3 123466290 123466592 -104057986 - AluSc SINE Alu -8 301 1 1062 209 30 109 chr3 123466603 123466763 -104057815 - L1MC4 LINE L1 -1 8041 7870 1543 203 28 7 chr3 123466763 123467049 -104057529 - AluJo SINE Alu -18 294 3 1062 209 30 109 chr3 123467049 123467281 -104057297 - L1MC4 LINE L1 -172 7870 7680 864 150 8 0 chr3 123467289 123467422 -104057156 + AluJo SINE Alu 1 134 -178 756 205 37 42 chr3 123467484 123467674 -104056904 - L1MC4 LINE L1 -368 7674 7486 230 234 0 0 chr3 123468079 123468126 -104056452 - L1MC4 LINE L1 -551 7491 7445 1511 118 30 113 chr3 123468643 123468972 -104055606 - AluYb8 SINE Alu -16 302 1 3366 115 29 2 chr3 123469010 123469496 -104055082 - Tigger3b DNA MER2_type 0 1231 733 986 145 0 0 chr3 123469499 123469644 -104054934 - AluSg/x SINE Alu -8 302 158 3609 108 82 6 chr3 123469644 123470265 -104054313 - Tigger3b DNA MER2_type -498 733 66 237 65 0 0 chr3 123470270 123470301 -104054277 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 2111 110 3 3 chr3 123470301 123470587 -104053991 - AluSx SINE Alu -26 286 1 492 178 59 25 chr3 123470925 123471043 -104053535 + MIR SINE MIR 112 233 -29 1883 209 73 18 chr3 123471046 123471242 -104053336 - L1 LINE L1 -2331 3815 3631 2591 58 0 7 chr3 123471242 123471552 -104053026 - AluY SINE Alu -1 310 3 1883 209 73 18 chr3 123471552 123471848 -104052730 - L1 LINE L1 -2515 3631 3296 1191 186 54 17 chr3 123471900 123472195 -104052383 - MER33 DNA MER1_type -5 319 14 2213 103 3 3 chr3 123472204 123472495 -104052083 - AluSg SINE Alu -17 293 3 327 164 62 37 chr3 123472550 123472658 -104051920 - MER34 LTR ERV1 -16 556 434 2287 102 0 16 chr3 123472688 123472993 -104051585 + AluSx SINE Alu 1 300 -12 1614 174 24 14 chr3 123473312 123473606 -104050972 - AluJo SINE Alu -14 298 2 2151 122 11 0 chr3 123473692 123473979 -104050599 - AluSx SINE Alu -19 293 4 360 126 0 20 chr3 123474067 123474133 -104050445 + Alu SINE Alu 1 44 -258 2226 114 13 3 chr3 123474326 123474632 -104049946 - AluSg SINE Alu -1 309 1 1598 65 0 0 chr3 123474999 123475212 -104049366 - AluSg/x SINE Alu 0 309 97 2250 114 3 0 chr3 123475223 123475529 -104049049 - AluSg SINE Alu -3 307 1 300 302 178 6 chr3 123475553 123475692 -104048886 + MIR3 SINE MIR 7 181 -27 406 247 117 19 chr3 123475692 123475854 -104048724 - MER5B DNA MER1_type 0 178 1 300 302 178 6 chr3 123475854 123475883 -104048695 + MIR3 SINE MIR 181 204 -4 490 274 62 71 chr3 123476339 123476565 -104048013 + MIR SINE MIR 13 236 -26 32 26 0 0 chr3 123477001 123477040 -104047538 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr3 123477085 123477107 -104047471 + AT_rich Low_complexity Low_complexity 1 22 0 2378 112 0 0 chr3 123477719 123478023 -104046555 - AluSg SINE Alu -6 304 1 345 172 0 17 chr3 123478048 123478106 -104046472 - AluJ/FLAM SINE Alu -245 57 1 1864 123 0 8 chr3 123478106 123478366 -104046212 - AluSx SINE Alu -13 299 42 1970 123 31 0 chr3 123478415 123478432 -104046146 - AluSq SINE Alu -12 301 286 705 97 0 0 chr3 123478432 123478535 -104046043 + (TTCC)n Simple_repeat Simple_repeat 3 105 0 1970 123 31 0 chr3 123478535 123478809 -104045769 - AluSq SINE Alu -27 286 1 2330 81 3 3 chr3 123479219 123479515 -104045063 + AluSg SINE Alu 1 296 -14 1237 98 0 0 chr3 123480042 123480206 -104044372 - AluSx SINE Alu 0 312 149 514 104 0 0 chr3 123480206 123480273 -104044305 - AluSx SINE Alu -245 68 2 1927 127 60 0 chr3 123480279 123480611 -104043967 - AluSx SINE Alu 0 358 10 645 134 55 31 chr3 123480620 123480747 -104043831 - L1MA8 LINE L1 -164 6127 5998 619 206 67 89 chr3 123481170 123481273 -104043305 - MER5A DNA MER1_type -13 176 77 2371 90 10 3 chr3 123481273 123481583 -104042995 - AluSp SINE Alu 0 313 2 619 206 67 89 chr3 123481583 123481659 -104042919 - MER5A DNA MER1_type -112 77 1 184 206 233 0 chr3 123481787 123481860 -104042718 + MIR SINE MIR 97 186 -76 2522 66 0 0 chr3 123482048 123482350 -104042228 - AluY SINE Alu -9 302 1 1977 135 20 3 chr3 123483918 123484214 -104040364 - AluSq SINE Alu -12 301 1 300 143 79 0 chr3 123484812 123484875 -104039703 - L1MA10 LINE L1 -1 6333 6266 21 0 0 0 chr3 123484878 123484899 -104039679 + AT_rich Low_complexity Low_complexity 1 21 0 258 250 83 42 chr3 123485051 123485171 -104039407 + L1MC4 LINE L1 7140 7264 -778 394 226 158 7 chr3 123485952 123486098 -104038480 + L1MC4 LINE L1 7338 7505 -537 1744 145 24 10 chr3 123486190 123486487 -104038091 + AluJb SINE Alu 1 301 -11 1756 49 58 9 chr3 123486488 123486711 -104037867 + AluY SINE Alu 1 234 -77 2410 90 7 0 chr3 123486744 123487045 -104037533 + AluSp SINE Alu 1 303 -10 1084 153 0 0 chr3 123487045 123487195 -104037383 + AluSg/x SINE Alu 134 283 -29 2070 127 7 0 chr3 123487208 123487500 -104037078 + AluSq SINE Alu 1 294 -19 474 216 142 0 chr3 123487518 123487652 -104036926 + MER5A DNA MER1_type 1 153 -36 499 204 34 118 chr3 123487668 123487801 -104036777 + L1ME2 LINE L1 5948 6091 -75 207 0 0 0 chr3 123487801 123487824 -104036754 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 499 204 34 118 chr3 123487824 123487836 -104036742 + L1ME2 LINE L1 6091 6102 -64 2197 60 8 4 chr3 123487836 123488103 -104036475 - AluSp SINE Alu -45 268 1 499 204 34 118 chr3 123488103 123488186 -104036392 + L1ME2 LINE L1 6102 6166 0 1463 115 0 34 chr3 123488493 123488702 -104035876 - AluY SINE Alu -109 202 1 2152 116 0 0 chr3 123488702 123488862 -104035716 - AluSg SINE Alu -16 294 132 2090 124 10 0 chr3 123488862 123489152 -104035426 - AluSg SINE Alu -17 293 1 2152 116 0 0 chr3 123489152 123489285 -104035293 - AluSg SINE Alu -177 133 1 1287 241 70 21 chr3 123489285 123489713 -104034865 - L1MD3 LINE L1 -2021 5974 5526 2428 95 3 0 chr3 123489716 123490020 -104034558 + AluSp SINE Alu 1 305 -8 2433 76 0 3 chr3 123490099 123490403 -104034175 + AluY SINE Alu 1 303 -8 975 188 0 0 chr3 123490427 123490597 -104033981 + FRAM SINE Alu 1 167 -9 23 0 0 0 chr3 123490618 123490641 -104033937 + AT_rich Low_complexity Low_complexity 1 23 0 2158 121 3 7 chr3 123490741 123491046 -104033532 + AluSx SINE Alu 2 305 -7 2456 77 0 3 chr3 123491116 123491427 -104033151 - AluY SINE Alu -1 310 1 2371 93 3 0 chr3 123491792 123492094 -104032484 + AluSx SINE Alu 1 303 -9 2078 133 0 0 chr3 123492096 123492398 -104032180 + AluSg SINE Alu 1 302 -8 1396 185 28 0 chr3 123492709 123492963 -104031615 + AluJo SINE Alu 7 267 -45 722 181 47 0 chr3 123493085 123493212 -104031366 + FLAM_A SINE Alu 1 133 0 1569 111 5 5 chr3 123493374 123493591 -104030987 - AluSx SINE Alu -95 217 1 23 33 0 0 chr3 123493652 123493682 -104030896 + AT_rich Low_complexity Low_complexity 1 30 0 1047 175 4 95 chr3 123493768 123494020 -104030558 - AluJo SINE Alu -83 229 1 298 313 10 0 chr3 123494030 123494129 -104030449 + L1MC5 LINE L1 7733 7832 -129 1040 85 0 21 chr3 123494235 123494376 -104030202 - AluSg/x SINE Alu -10 302 165 2557 73 0 0 chr3 123494500 123494813 -104029765 - AluSp SINE Alu 0 313 1 507 154 0 106 chr3 123495162 123495285 -104029293 + FLAM_A SINE Alu 1 110 -32 451 91 30 0 chr3 123495334 123495400 -104029178 + AluSg/x SINE Alu 111 178 -131 818 102 51 0 chr3 123495432 123495550 -104029028 + FRAM SINE Alu 44 167 -9 364 180 29 129 chr3 123495550 123495689 -104028889 - MER5A DNA MER1_type -32 157 33 754 151 0 58 chr3 123495706 123495870 -104028708 - FLAM_C SINE Alu 0 133 1 1620 157 29 29 chr3 123496519 123496831 -104027747 - AluJb SINE Alu 0 312 1 28 29 0 0 chr3 123497442 123497477 -104027101 + AT_rich Low_complexity Low_complexity 1 35 0 182 274 48 16 chr3 123497711 123497773 -104026805 + MIR SINE MIR 75 138 -124 275 287 78 16 chr3 123497993 123498122 -104026456 + MIR SINE MIR 120 256 -6 191 264 81 46 chr3 123498180 123498267 -104026311 - L2 LINE L2 -23 3290 3201 182 309 69 86 chr3 123498261 123498436 -104026142 - L2 LINE L2 -412 2902 2731 * 2047 122 31 0 chr3 123499258 123499546 -104025032 - AluSx SINE Alu -15 297 1 2289 108 0 10 chr3 123499835 123500149 -104024429 - AluSq SINE Alu -2 311 1 1980 153 0 0 chr3 123500505 123500800 -104023778 + AluSx SINE Alu 1 295 -17 1807 86 9 0 chr3 123500803 123501035 -104023543 + AluSg SINE Alu 1 234 -76 2622 176 85 15 chr3 123501172 123501844 -104022734 + L1MCa LINE L1 873 1591 -4835 2196 128 0 3 chr3 123501857 123502163 -104022415 + AluSp SINE Alu 1 305 -8 1370 136 22 134 chr3 123502177 123502296 -104022282 + L1MC2 LINE L1 5218 5349 -980 1637 138 22 19 chr3 123502296 123502564 -104022014 + AluJb SINE Alu 27 295 -17 1370 136 22 134 chr3 123502564 123502706 -104021872 + L1MC2 LINE L1 5349 5425 -904 2031 139 0 23 chr3 123502706 123503008 -104021570 + AluSx SINE Alu 1 295 -17 1370 136 22 134 chr3 123503008 123503154 -104021424 + L1MC2 LINE L1 5425 5586 -743 * 1705 161 54 6 chr3 123503152 123503289 -104021289 + L1MC2 LINE L1 5818 5947 -397 1559 188 4 18 chr3 123503289 123503566 -104021012 + AluJo SINE Alu 1 273 -39 1705 161 54 6 chr3 123503566 123503764 -104020814 + L1MC2 LINE L1 5947 6169 -175 646 205 16 0 chr3 123503769 123503896 -104020682 + FLAM_C SINE Alu 6 134 -9 2062 96 4 14 chr3 123503897 123504178 -104020400 + AluSg SINE Alu 1 278 -32 237 33 0 0 chr3 123504178 123504208 -104020370 + (TAA)n Simple_repeat Simple_repeat 1 30 0 1674 155 3 70 chr3 123504211 123504540 -104020038 + AluJb SINE Alu 1 307 -5 2100 102 6 75 chr3 123504542 123504695 -104019883 + AluSx SINE Alu 1 120 -192 2191 98 10 30 chr3 123504695 123505000 -104019578 + AluSg SINE Alu 1 299 -11 2100 102 6 75 chr3 123505000 123505181 -104019397 + AluSx SINE Alu 120 312 0 475 139 57 177 chr3 123505188 123505218 -104019360 + L1MC2 LINE L1 6156 6188 -156 884 175 60 18 chr3 123505218 123505384 -104019194 - FAM SINE Alu -2 173 1 475 139 57 177 chr3 123505384 123505511 -104019067 + L1MC2 LINE L1 6188 6294 -50 660 238 53 16 chr3 123505647 123505836 -104018742 - MER34B LTR ERV1 -369 196 1 2172 131 0 0 chr3 123506004 123506310 -104018268 + AluSx SINE Alu 1 306 -6 1908 160 17 0 chr3 123506450 123506743 -104017835 - AluJb SINE Alu -14 298 1 2328 107 0 10 chr3 123506834 123507249 -104017329 + AluSx SINE Alu 1 412 0 252 206 14 41 chr3 123507643 123507716 -104016862 + L2 LINE L2 2212 2282 -1032 2057 143 3 3 chr3 123507909 123508216 -104016362 - AluSq SINE Alu -6 307 1 1711 106 30 0 chr3 123508229 123508465 -104016113 - AluSx SINE Alu -69 243 1 2315 84 3 3 chr3 123508875 123509171 -104015407 + AluSg SINE Alu 1 296 -14 1218 99 0 0 chr3 123509704 123509866 -104014712 - AluSx SINE Alu -2 308 147 514 104 0 0 chr3 123509866 123509933 -104014645 - AluSx SINE Alu -245 68 2 1927 127 60 0 chr3 123509939 123510271 -104014307 - AluSx SINE Alu 0 358 10 616 131 57 33 chr3 123510280 123510402 -104014176 - L1MA8 LINE L1 -164 6127 6003 505 186 60 176 chr3 123510823 123510945 -104013633 - MER5A DNA MER1_type -13 176 84 2455 74 10 3 chr3 123510945 123511255 -104013323 - AluSp SINE Alu 0 313 2 505 186 60 176 chr3 123511255 123511331 -104013247 - MER5A DNA MER1_type -105 84 1 184 206 233 0 chr3 123511459 123511532 -104013046 + MIR SINE MIR 97 186 -76 2522 66 0 0 chr3 123511720 123512022 -104012556 - AluY SINE Alu -9 302 1 1977 135 20 3 chr3 123513590 123513886 -104010692 - AluSq SINE Alu -12 301 1 300 143 79 0 chr3 123514484 123514547 -104010031 - L1MA10 LINE L1 -1 6333 6266 21 0 0 0 chr3 123514550 123514571 -104010007 + AT_rich Low_complexity Low_complexity 1 21 0 258 250 83 42 chr3 123514723 123514843 -104009735 + L1MC4 LINE L1 7140 7264 -778 394 226 158 7 chr3 123515624 123515770 -104008808 + L1MC4 LINE L1 7338 7505 -537 1744 145 24 10 chr3 123515862 123516159 -104008419 + AluJb SINE Alu 1 301 -11 1727 54 58 9 chr3 123516160 123516383 -104008195 + AluY SINE Alu 1 234 -77 2365 91 10 0 chr3 123516416 123516714 -104007864 + AluSp SINE Alu 1 301 -12 1084 153 0 0 chr3 123516714 123516864 -104007714 + AluSg/x SINE Alu 132 281 -29 1024 149 12 6 chr3 123516877 123517038 -104007540 + AluSx SINE Alu 1 162 -150 461 270 15 0 chr3 123517170 123517307 -104007271 - MIR SINE MIR -92 170 32 407 283 19 25 chr3 123517403 123517562 -104007016 + HAL1 LINE L1 2009 2166 -341 2237 99 0 63 chr3 123517587 123517997 -104006581 + AluSx SINE Alu 1 389 0 1502 149 36 11 chr3 123518253 123518529 -104006049 - L1MA4 LINE L1 -11 6289 6007 1415 89 24 5 chr3 123518535 123518748 -104005830 + L1M1 LINE L1 5342 5558 -742 44 35 0 0 chr3 123518895 123518953 -104005625 + AT_rich Low_complexity Low_complexity 1 58 0 834 248 5 10 chr3 123519829 123520035 -104004543 + MIR SINE MIR 7 211 -51 2169 97 6 73 chr3 123521024 123521353 -104003225 - AluSq SINE Alu -6 307 1 2234 93 0 3 chr3 123522151 123522441 -104002137 + AluSq SINE Alu 1 289 -24 201 265 0 0 chr3 123522685 123522734 -104001844 - L2 LINE L2 0 3272 3224 940 129 0 0 chr3 123523066 123523198 -104001380 + FLAM_C SINE Alu 2 133 0 2146 125 7 0 chr3 123523331 123523634 -104000944 - AluSx SINE Alu -7 305 1 2254 162 20 48 chr3 123524081 123524151 -104000427 - MSTB LTR MaLR 0 426 356 2298 104 0 7 chr3 123524151 123524450 -104000128 + AluSp SINE Alu 1 297 -16 2254 162 20 48 chr3 123524450 123524817 -103999761 - MSTB LTR MaLR -70 356 1 2274 106 0 3 chr3 123524848 123525151 -103999427 + AluSg SINE Alu 1 302 -8 245 277 90 73 chr3 123525377 123525554 -103999024 + MLT1H LTR MaLR 109 288 -261 233 250 0 0 chr3 123525716 123525772 -103998806 + MLT1H LTR MaLR 492 547 -2 2301 87 3 3 chr3 123527378 123527676 -103996902 + AluSp SINE Alu 1 298 -15 2218 111 3 0 chr3 123528252 123528540 -103996038 + AluSp SINE Alu 1 289 -24 203 0 0 36 chr3 123528550 123528578 -103996000 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 239 316 99 67 chr3 123528578 123528831 -103995747 - MIR SINE MIR 0 262 2 2491 77 3 0 chr3 123528880 123529180 -103995398 + AluSp SINE Alu 1 301 -12 235 250 143 18 chr3 123529498 123529610 -103994968 + L2 LINE L2 3142 3267 -5 214 312 104 0 chr3 123529647 123529724 -103994854 - MER91A DNA MER1_type -12 184 100 233 395 122 7 chr3 123529733 123529880 -103994698 - MER91A DNA MER1_type -20 176 13 1586 93 5 37 chr3 123530073 123530289 -103994289 + AluSp SINE Alu 3 211 -102 472 145 0 0 chr3 123530289 123530358 -103994220 - AluS SINE Alu -242 70 2 1632 194 0 0 chr3 123530363 123530656 -103993922 - AluJb SINE Alu -19 293 1 2496 81 0 3 chr3 123530707 123531016 -103993562 + AluSq SINE Alu 1 308 -5 287 243 214 0 chr3 123531017 123531120 -103993458 - MIR SINE MIR -133 129 5 2490 76 3 0 chr3 123531745 123532049 -103992529 - AluSp SINE Alu -8 305 1 786 178 6 63 chr3 123532142 123532316 -103992262 + MER20 DNA MER1_type 56 219 0 2351 67 0 24 chr3 123532793 123533091 -103991487 + AluY SINE Alu 1 291 -20 11403 142 33 17 chr3 123533162 123533180 -103991398 + L1M4c LINE L1 1641 1657 -4725 1842 124 0 84 chr3 123533180 123533333 -103991245 + AluSx SINE Alu 1 114 -198 2380 78 20 16 chr3 123533333 123533639 -103990939 + AluSp SINE Alu 1 307 -6 1842 124 0 84 chr3 123533639 123533807 -103990771 + AluSx SINE Alu 114 295 -17 11403 142 33 17 chr3 123533807 123535798 -103988780 + L1M4c LINE L1 1657 4174 -2208 1662 141 36 59 chr3 123535804 123536110 -103988468 + AluSg1 SINE Alu 1 299 -10 554 110 49 0 chr3 123536206 123536288 -103988290 - AluSp/q SINE Alu -17 296 211 1488 178 7 24 chr3 123536514 123536812 -103987766 - AluSg SINE Alu -17 293 1 918 132 0 0 chr3 123536812 123536941 -103987637 - AluSq/x SINE Alu -178 135 7 2566 62 7 0 chr3 123537133 123537440 -103987138 + AluSp SINE Alu 1 309 -4 928 134 0 0 chr3 123537573 123537700 -103986878 + AluSq/x SINE Alu 1 127 -185 2129 93 25 0 chr3 123538063 123538341 -103986237 + AluSx SINE Alu 14 298 -14 364 333 24 18 chr3 123538597 123538762 -103985816 - MER91A DNA MER1_type -30 166 1 2326 88 3 3 chr3 123538825 123539121 -103985457 + AluY SINE Alu 1 296 -15 1229 137 0 57 chr3 123539133 123539266 -103985312 - L1MA5 LINE L1 -2 6298 6182 1718 201 0 3 chr3 123539266 123539569 -103985009 - AluJo SINE Alu -10 302 1 1229 137 0 57 chr3 123539569 123539662 -103984916 - L1MA5 LINE L1 -118 6182 6085 636 144 0 10 chr3 123539664 123539768 -103984810 + AluJo/FLAM SINE Alu 6 108 -204 531 171 138 32 chr3 123539769 123539892 -103984686 - AluJb SINE Alu -59 253 118 228 104 21 0 chr3 123539897 123539945 -103984633 - L1M LINE L1 -1001 5302 5254 2218 125 10 0 chr3 123539949 123540253 -103984325 - AluSp SINE Alu -6 307 1 2003 164 24 0 chr3 123540277 123540649 -103983929 - L1 LINE L1 -1016 5130 4750 2069 138 7 0 chr3 123540649 123540945 -103983633 - AluSx SINE Alu -14 298 1 1375 167 0 0 chr3 123540966 123541199 -103983379 - AluSg/x SINE Alu 0 310 78 579 133 10 0 chr3 123541199 123541297 -103983281 - L1 LINE L1 -1832 4314 4216 466 133 0 0 chr3 123541392 123541467 -103983111 - L1 LINE L1 -1947 4199 4125 2106 101 37 7 chr3 123543131 123543429 -103981149 + AluSx SINE Alu 1 307 -5 243 94 0 0 chr3 123543446 123543478 -103981100 + U5 snRNA snRNA 1 32 -84 2363 68 0 16 chr3 123543478 123543785 -103980793 - AluY SINE Alu -9 302 1 2274 106 3 0 chr3 123543805 123544098 -103980480 - AluSp SINE Alu -16 297 4 989 93 7 0 chr3 123544130 123544269 -103980309 - AluY SINE Alu -13 298 159 441 130 14 0 chr3 123544269 123544338 -103980240 - AluJ/FLAM SINE Alu -236 76 7 295 203 58 14 chr3 123544344 123544413 -103980165 + MER3 DNA MER1_type 138 209 0 1099 171 61 128 chr3 123544627 123545018 -103979560 - MLT1A1 LTR MaLR 0 365 1 2442 61 0 3 chr3 123545206 123545500 -103979078 - AluY SINE Alu -18 293 1 2386 92 0 0 chr3 123546294 123546600 -103977978 + AluSg SINE Alu 1 306 -4 22 35 0 0 chr3 123546824 123546853 -103977725 + AT_rich Low_complexity Low_complexity 1 29 0 700 151 0 0 chr3 123546882 123546988 -103977590 - FLAM_C SINE Alu -18 125 20 213 286 29 0 chr3 123547078 123547148 -103977430 - L2 LINE L2 0 3272 3201 928 134 0 0 chr3 123547621 123547748 -103976830 - AluSq/x SINE Alu -185 127 1 2566 62 7 0 chr3 123547881 123548188 -103976390 - AluSp SINE Alu -4 309 1 918 132 0 0 chr3 123548380 123548509 -103976069 + AluSq/x SINE Alu 7 135 -177 2358 80 0 13 chr3 123548509 123548808 -103975770 + AluSg SINE Alu 1 295 -15 2218 111 3 0 chr3 123549384 123549672 -103974906 + AluSp SINE Alu 1 289 -24 203 0 0 36 chr3 123549682 123549710 -103974868 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 239 316 99 67 chr3 123549710 123549963 -103974615 - MIR SINE MIR 0 262 2 2468 80 3 0 chr3 123550012 123550311 -103974267 + AluSp SINE Alu 1 300 -13 235 250 143 18 chr3 123550629 123550741 -103973837 + L2 LINE L2 3142 3267 -5 214 312 104 0 chr3 123550778 123550855 -103973723 - MER91A DNA MER1_type -12 184 100 233 395 122 7 chr3 123550864 123551011 -103973567 - MER91A DNA MER1_type -20 176 13 1570 97 5 37 chr3 123551204 123551420 -103973158 + AluSp SINE Alu 3 211 -102 472 145 0 0 chr3 123551420 123551489 -103973089 - AluS SINE Alu -243 70 2 1632 194 0 0 chr3 123551494 123551787 -103972791 - AluJb SINE Alu -19 293 1 2474 84 0 3 chr3 123551838 123552147 -103972431 + AluSq SINE Alu 1 308 -5 287 243 214 0 chr3 123552148 123552251 -103972327 - MIR SINE MIR -133 129 5 591 128 0 0 chr3 123552586 123552680 -103971898 + L1P LINE L1 2279 2372 -3774 1899 102 4 0 chr3 123553055 123553300 -103971278 - AluSg SINE Alu -64 246 1 1649 162 21 10 chr3 123553451 123553741 -103970837 - AluJb SINE Alu -19 293 1 225 180 0 0 chr3 123555125 123555175 -103969403 - AluSp SINE Alu 0 302 253 390 300 8 0 chr3 123555175 123555295 -103969283 - L2 LINE L2 -272 3041 2921 2436 68 10 0 chr3 123555679 123555974 -103968604 + AluSq SINE Alu 1 298 -15 2388 50 40 10 chr3 123556361 123556662 -103967916 + AluY SINE Alu 1 310 -1 411 200 30 89 chr3 123557501 123557636 -103966942 + MER5B DNA MER1_type 44 170 -8 425 217 175 28 chr3 123557640 123557783 -103966795 - MER5A DNA MER1_type -8 181 18 519 279 113 31 chr3 123557980 123558306 -103966272 + L2 LINE L2 2829 3181 -132 411 130 30 40 chr3 123558308 123558408 -103966170 + LTR49 LTR ERV1 1 99 -496 741 157 32 105 chr3 123558426 123558515 -103966063 + LTR49 LTR ERV1 366 460 -135 1982 112 4 11 chr3 123558515 123558791 -103965787 - AluSp SINE Alu -39 274 1 741 157 32 105 chr3 123558791 123558949 -103965629 + LTR49 LTR ERV1 460 595 0 224 298 58 10 chr3 123558950 123559054 -103965524 + L2 LINE L2 3174 3282 -31 2380 97 3 0 chr3 123559088 123559396 -103965182 + AluSg SINE Alu 1 309 -1 2196 94 35 0 chr3 123559399 123559686 -103964892 + AluSp SINE Alu 1 297 -16 570 177 113 0 chr3 123559715 123559841 -103964737 - MLT2C1 LTR ERVL -1 396 250 2117 106 35 32 chr3 123559864 123560176 -103964402 - AluSq SINE Alu 0 313 1 1830 172 10 7 chr3 123560184 123560486 -103964092 - AluJb SINE Alu -9 303 1 2129 109 3 7 chr3 123560641 123560924 -103963654 - AluSq SINE Alu -31 282 1 411 250 13 86 chr3 123560990 123561222 -103963356 - MER46C DNA MER2_type -65 273 59 258 187 53 40 chr3 123561272 123561337 -103963241 + (TATATG)n Simple_repeat Simple_repeat 3 71 -7 180 0 0 0 chr3 123561337 123561357 -103963221 + (CA)n Simple_repeat Simple_repeat 2 21 0 258 187 53 40 chr3 123561357 123561366 -103963212 + (TATATG)n Simple_repeat Simple_repeat 71 78 0 2418 75 13 0 chr3 123561836 123562141 -103962437 - AluY SINE Alu -2 309 1 258 189 53 106 chr3 123562143 123562275 -103962303 + L1ME3A LINE L1 6041 6165 -5 1565 224 19 12 chr3 123562285 123562607 -103961971 + MLT1A1 LTR MaLR 5 328 -37 2149 127 0 0 chr3 123562607 123562907 -103961671 + AluSx SINE Alu 1 300 -12 2068 109 3 11 chr3 123563242 123563578 -103961000 - AluSg SINE Alu 0 334 1 27 29 0 0 chr3 123563580 123563614 -103960964 + AT_rich Low_complexity Low_complexity 1 34 0 2108 113 14 10 chr3 123563630 123563922 -103960656 - AluSx SINE Alu -19 293 1 2549 54 0 3 chr3 123564027 123564324 -103960254 + AluY SINE Alu 1 296 -15 869 112 0 0 chr3 123564413 123564529 -103960049 + AluSc SINE Alu 183 298 -11 512 264 76 52 chr3 123564958 123565287 -103959291 - L2 LINE L2 -9 3304 2968 30 45 0 0 chr3 123565994 123566038 -103958540 + AT_rich Low_complexity Low_complexity 1 44 0 1579 149 21 100 chr3 123566141 123566340 -103958238 - AluYb8 SINE Alu -15 303 139 2097 149 0 7 chr3 123566340 123566649 -103957929 - AluSq SINE Alu -6 307 1 1579 149 21 100 chr3 123566649 123566778 -103957800 - AluYb8 SINE Alu -179 139 1 535 222 52 30 chr3 123567467 123567602 -103956976 + MER89 LTR ERV1 3 140 -419 2016 200 16 31 chr3 123568079 123568504 -103956074 + MER89 LTR ERV1 141 559 0 1080 99 7 0 chr3 123568919 123569061 -103955517 + AluSg/x SINE Alu 138 280 -30 2477 80 0 6 chr3 123569271 123569584 -103954994 - AluY SINE Alu 0 311 1 25 0 0 0 chr3 123569741 123569766 -103954812 + AT_rich Low_complexity Low_complexity 1 25 0 2446 87 3 0 chr3 123570055 123570355 -103954223 - AluSp SINE Alu -12 301 1 2505 48 0 3 chr3 123570435 123570727 -103953851 - AluY SINE Alu -20 291 1 270 0 0 0 chr3 123570936 123570966 -103953612 + (TG)n Simple_repeat Simple_repeat 1 30 0 * 306 0 0 0 chr3 123570965 123570999 -103953579 + (GA)n Simple_repeat Simple_repeat 1 34 0 1574 166 10 52 chr3 123570999 123571288 -103953290 - AluJb SINE Alu -34 278 2 1886 147 10 10 chr3 123571817 123572116 -103952462 - AluJb SINE Alu -9 303 5 2203 90 14 0 chr3 123572332 123572610 -103951968 + AluSq SINE Alu 15 296 -17 279 316 139 37 chr3 123573623 123573695 -103950883 + MIR SINE MIR 17 80 -182 2259 83 10 10 chr3 123573695 123573997 -103950581 - AluSx SINE Alu -10 302 1 279 316 139 37 chr3 123573997 123574111 -103950467 + MIR SINE MIR 80 222 -40 848 236 156 112 chr3 123575003 123575148 -103949430 + HsTC2a DNA Tc2 40 177 -1723 2133 90 0 11 chr3 123575148 123575426 -103949152 - AluSp SINE Alu -38 275 1 848 236 156 112 chr3 123575426 123575781 -103948797 + HsTC2a DNA Tc2 177 562 -182 321 121 69 0 chr3 123575781 123575839 -103948739 - L2 LINE L2 -1097 2217 2156 1923 162 0 7 chr3 123575843 123576152 -103948426 + AluJb SINE Alu 4 310 -2 986 221 38 8 chr3 123576154 123576417 -103948161 - L2 LINE L2 -1272 2042 1772 2246 86 0 0 chr3 123576440 123576718 -103947860 + AluSc SINE Alu 1 278 -31 1964 150 0 7 chr3 123576842 123577142 -103947436 + AluSx SINE Alu 1 298 -14 184 400 27 13 chr3 123577464 123577539 -103947039 + L2 LINE L2 3115 3190 -82 690 140 0 0 chr3 123577971 123578085 -103946493 + (TG)n Simple_repeat Simple_repeat 2 115 0 204 209 0 0 chr3 123578085 123578128 -103946450 - L2 LINE L2 -304 2968 2926 2405 93 0 0 chr3 123578240 123578541 -103946037 - AluSx SINE Alu -11 301 1 2586 47 0 3 chr3 123578559 123578860 -103945718 - AluY SINE Alu -11 300 1 207 0 0 0 chr3 123578935 123578958 -103945620 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 4482 21 17 0 chr3 123578986 123579468 -103945110 + LTR2B LTR ERV1 1 490 0 2045 137 7 0 chr3 123579481 123579773 -103944805 - AluSx SINE Alu -18 294 1 585 304 43 5 chr3 123579869 123580053 -103944525 + MIR SINE MIR 1 191 -71 308 275 0 33 chr3 123580108 123580199 -103944379 - MIR SINE MIR -101 161 74 2141 104 13 3 chr3 123580292 123580590 -103943988 - AluSp SINE Alu -12 301 1 2220 84 3 3 chr3 123580860 123581189 -103943389 + AluSq SINE Alu 1 329 0 2372 96 0 0 chr3 123581517 123581820 -103942758 - AluSx SINE Alu -5 307 5 835 97 0 0 chr3 123581821 123581934 -103942644 - AluSq/x SINE Alu -199 113 1 2119 103 3 0 chr3 123582846 123583138 -103941440 + AluSx SINE Alu 1 293 -19 1711 162 33 33 chr3 123583446 123583748 -103940830 - AluJb SINE Alu -10 302 1 23 0 0 0 chr3 123583756 123583779 -103940799 + AT_rich Low_complexity Low_complexity 1 23 0 1397 181 0 4 chr3 123583846 123584083 -103940495 + AluJb SINE Alu 55 290 -22 315 0 0 0 chr3 123584688 123584723 -103939855 + (CA)n Simple_repeat Simple_repeat 1 35 0 421 292 38 4 chr3 123584750 123585011 -103939567 - L1ME3 LINE L1 -1 6161 5691 369 0 0 0 chr3 123585011 123585052 -103939526 + (TG)n Simple_repeat Simple_repeat 2 42 0 2379 81 0 10 chr3 123585061 123585368 -103939210 - AluSg SINE Alu -6 304 1 231 346 9 28 chr3 123585452 123585559 -103939019 + MER5A DNA MER1_type 63 167 -22 2176 106 7 23 chr3 123586107 123586410 -103938168 - AluSx SINE Alu -14 298 1 1995 129 3 0 chr3 123586436 123586723 -103937855 - AluSp SINE Alu -25 288 1 2239 176 46 25 chr3 123586723 123587161 -103937417 - MLT1C LTR MaLR 0 467 21 893 193 7 0 chr3 123587184 123587334 -103937244 - FRAM SINE Alu -15 151 1 2284 94 3 13 chr3 123587428 123587735 -103936843 - AluSx SINE Alu -8 304 1 435 38 0 0 chr3 123588462 123588515 -103936063 + (GA)n Simple_repeat Simple_repeat 1 53 0 234 0 0 0 chr3 123588514 123588540 -103936038 + (TG)n Simple_repeat Simple_repeat 2 27 0 * 1626 227 16 24 chr3 123588562 123588932 -103935646 - MLT1A2 LTR MaLR -7 367 1 1769 186 7 7 chr3 123589284 123589580 -103934998 - AluSx SINE Alu -16 296 1 1025 144 6 24 chr3 123589615 123589770 -103934808 - AluJb SINE Alu -26 286 133 2275 113 3 0 chr3 123589770 123590081 -103934497 - AluSx SINE Alu 0 312 1 1025 144 6 24 chr3 123590081 123590092 -103934486 - AluJb SINE Alu -179 133 123 309 230 0 0 chr3 123590112 123590186 -103934392 + (TA)n Simple_repeat Simple_repeat 1 74 0 2162 117 7 0 chr3 123590186 123590477 -103934101 - AluSx SINE Alu -19 293 1 16695 77 4 2 chr3 123590553 123593445 -103931133 - L1PA7 LINE L1 -1 6153 3253 2155 81 11 4 chr3 123593445 123593717 -103930861 - AluY SINE Alu -37 274 1 2430 108 0 0 chr3 123593718 123594088 -103930490 - L1PA7 LINE L1 -2950 3196 2827 2206 108 3 7 chr3 123594169 123594476 -103930102 + AluSc SINE Alu 3 308 -1 21 0 0 0 chr3 123594648 123594669 -103929909 + AT_rich Low_complexity Low_complexity 1 21 0 2581 61 3 0 chr3 123594897 123595207 -103929371 - AluY SINE Alu 0 311 1 2460 112 5 36 chr3 123595783 123595904 -103928674 - L1PA7 LINE L1 -3305 2841 2718 2280 49 0 11 chr3 123595904 123596220 -103928358 - AluY SINE Alu 0 313 1 2460 112 5 36 chr3 123596220 123596490 -103928088 - L1PA7 LINE L1 -3428 2718 2461 2021 130 3 3 chr3 123596496 123596797 -103927781 - AluSx SINE Alu -11 301 1 352 77 0 19 chr3 123596797 123596849 -103927729 - AluJb SINE Alu -166 136 86 1554 168 39 11 chr3 123597002 123597351 -103927227 + AluJo SINE Alu 1 394 -15 181 57 57 0 chr3 123597351 123597386 -103927192 + (TA)n Simple_repeat Simple_repeat 2 38 0 1554 168 39 11 chr3 123597386 123597403 -103927175 + AluJo SINE Alu 394 409 0 308 64 21 0 chr3 123597965 123598012 -103926566 + (TG)n Simple_repeat Simple_repeat 1 48 0 1194 108 30 0 chr3 123598059 123598226 -103926352 - MLT1B LTR MaLR -217 173 2 399 293 36 21 chr3 123598229 123598369 -103926209 - LTR50 LTR ERVL -189 606 465 2498 247 69 55 chr3 123598405 123599026 -103925552 + L1MEc LINE L1 44 655 -5741 2453 67 0 3 chr3 123599026 123599323 -103925255 - AluY SINE Alu -15 296 1 2498 247 69 55 chr3 123599323 123599335 -103925243 + L1MEc LINE L1 655 665 -5731 1946 144 17 0 chr3 123599335 123599627 -103924951 - AluSx SINE Alu -15 297 1 2498 247 69 55 chr3 123599627 123599791 -103924787 + L1MEc LINE L1 665 825 -5571 183 42 0 0 chr3 123599791 123599815 -103924763 + (CAA)n Simple_repeat Simple_repeat 2 25 0 2498 247 69 55 chr3 123599815 123599872 -103924706 + L1MEc LINE L1 825 880 -5516 2075 117 13 23 chr3 123599872 123600180 -103924398 + AluSq SINE Alu 1 305 -8 2498 247 69 55 chr3 123600180 123600234 -103924344 + L1MEc LINE L1 880 968 -5428 1546 203 103 19 chr3 123600260 123600687 -103923891 + L1ME1 LINE L1 5660 6129 -37 375 291 177 0 chr3 123601427 123601568 -103923010 + MER5A DNA MER1_type 10 175 -14 329 312 60 35 chr3 123601590 123601789 -103922789 + MIR SINE MIR 59 262 0 1227 142 88 176 chr3 123601975 123602052 -103922526 - MLT1A2 LTR MaLR 0 374 292 2254 110 0 0 chr3 123602052 123602342 -103922236 - AluSx SINE Alu -22 290 1 1227 142 88 176 chr3 123602342 123602519 -103922059 - MLT1A2 LTR MaLR -82 292 167 2284 105 0 3 chr3 123602519 123602825 -103921753 - AluSx SINE Alu -7 305 1 1227 142 88 176 chr3 123602825 123602979 -103921599 - MLT1A2 LTR MaLR -207 167 1 739 189 8 0 chr3 123603301 123603423 -103921155 - FLAM_A SINE Alu -7 126 4 330 232 0 0 chr3 123603440 123603509 -103921069 + L2 LINE L2 3245 3313 0 320 167 11 89 chr3 123603598 123603688 -103920890 - L1MC4 LINE L1 -10 8032 7950 26 0 0 0 chr3 123603710 123603736 -103920842 + AT_rich Low_complexity Low_complexity 1 26 0 209 33 33 0 chr3 123603784 123603814 -103920764 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 2030 118 0 24 chr3 123603817 123604113 -103920465 - AluSx SINE Alu -23 289 1 3143 193 72 91 chr3 123604123 123604448 -103920130 - L1MC4 LINE L1 0 8042 7712 1232 36 0 0 chr3 123604448 123604586 -103919992 + L1PA7 LINE L1 6011 6148 -6 3143 193 72 91 chr3 123604586 123604729 -103919849 - L1MC4 LINE L1 -330 7712 7568 1567 103 0 36 chr3 123604729 123604953 -103919625 - AluSg/x SINE Alu -16 294 79 3143 193 72 91 chr3 123604953 123605399 -103919179 - L1MC4 LINE L1 -474 7568 7147 2098 146 0 0 chr3 123605399 123605700 -103918878 - AluSx SINE Alu -11 301 1 3143 193 72 91 chr3 123605700 123605845 -103918733 - L1MC4 LINE L1 -895 7147 7001 2847 236 19 48 chr3 123605857 123606766 -103917812 - L1ME1 LINE L1 -5 6161 5280 404 65 0 32 chr3 123606768 123606824 -103917754 - AluY SINE Alu -5 304 250 1479 63 0 0 chr3 123606824 123606998 -103917580 - AluY SINE Alu -137 174 1 412 164 26 112 chr3 123607003 123607112 -103917466 - L1ME1 LINE L1 -861 5285 5191 1548 96 5 0 chr3 123607112 123607309 -103917269 - AluSp SINE Alu -13 300 103 412 164 26 112 chr3 123607309 123607351 -103917227 - L1ME1 LINE L1 -955 5191 5147 1108 188 61 9 chr3 123607351 123607564 -103917014 + MLT1F1 LTR MaLR 344 567 0 4793 117 31 20 chr3 123607620 123608382 -103916196 - L1PA16 LINE L1 -9 6157 5387 2873 246 71 25 chr3 123608438 123609475 -103915103 - L1MEc LINE L1 -5200 1196 112 2188 126 0 0 chr3 123609496 123609806 -103914772 - AluSx SINE Alu -2 310 1 1799 171 21 45 chr3 123609810 123610013 -103914565 - L1MC3 LINE L1 -16 7769 7578 1954 174 3 0 chr3 123610013 123610323 -103914255 - AluJb SINE Alu -1 311 1 1799 171 21 45 chr3 123610323 123610498 -103914080 - L1MC3 LINE L1 -207 7578 7400 346 208 0 28 chr3 123610499 123610571 -103914007 + L1 LINE L1 4790 4859 -1287 * 2551 106 5 3 chr3 123610567 123610703 -103913875 - L1PB1 LINE L1 -1 6150 6015 15648 184 29 9 chr3 123610703 123610999 -103913579 - L1MA6 LINE L1 -284 6732 6443 276 100 0 0 chr3 123610999 123611039 -103913539 + (CA)n Simple_repeat Simple_repeat 2 41 0 15648 184 29 9 chr3 123611039 123612396 -103912182 - L1MA6 LINE L1 -573 6443 5115 534 82 0 0 chr3 123612396 123612481 -103912097 + (TTATG)n Simple_repeat Simple_repeat 2 86 0 15648 184 29 9 chr3 123612481 123613957 -103910621 - L1MA6 LINE L1 -1901 5115 3670 2301 100 0 3 chr3 123613957 123614256 -103910322 + AluSx SINE Alu 2 299 -13 15648 184 29 9 chr3 123614256 123616484 -103908094 - L1MA6 LINE L1 -3346 3670 1311 4746 199 89 8 chr3 123616488 123617554 -103907024 - L1MA6 LINE L1 -5706 1157 6 812 213 6 0 chr3 123617568 123617728 -103906850 - L1MC3 LINE L1 -377 7408 7248 * 1275 135 67 43 chr3 123617727 123617855 -103906723 - L1MC3 LINE L1 -762 7023 6900 3605 190 53 33 chr3 123617855 123618622 -103905956 - LTR39 LTR ERV1 0 783 1 1275 135 67 43 chr3 123618622 123618775 -103905803 - L1MC3 LINE L1 -885 6900 6735 1204 121 0 0 chr3 123618775 123618940 -103905638 + AluSg/x SINE Alu 148 312 0 563 225 174 6 chr3 123618940 123619118 -103905460 - L1MC3 LINE L1 -1058 6727 6520 1832 166 20 61 chr3 123619138 123619530 -103905048 - L1MA9 LINE L1 0 6312 5937 1666 159 7 14 chr3 123619531 123619563 -103905015 + L1MA9 LINE L1 5655 5686 -626 2074 146 0 3 chr3 123619563 123619872 -103904706 + AluJo SINE Alu 1 308 -4 1666 159 7 14 chr3 123619872 123620128 -103904450 + L1MA9 LINE L1 5686 5941 -371 25 0 0 0 chr3 123620133 123620158 -103904420 + AT_rich Low_complexity Low_complexity 1 25 0 1667 174 10 17 chr3 123620312 123620611 -103903967 - AluJo SINE Alu -11 301 5 443 316 92 14 chr3 123620787 123621005 -103903573 + MIR SINE MIR 27 261 -1 1811 180 0 3 chr3 123621678 123621983 -103902595 - AluJo SINE Alu -7 305 2 184 238 71 0 chr3 123622631 123622673 -103901905 + L3b LINE CR1 1441 1485 -98 933 170 99 11 chr3 123623123 123623305 -103901273 + MER3 DNA MER1_type 12 209 0 415 221 12 0 chr3 123623578 123623664 -103900914 - L2 LINE L2 -2 3311 3225 1758 84 0 0 chr3 123623827 123624042 -103900536 - AluSc SINE Alu -8 301 87 766 210 7 0 chr3 123624072 123624210 -103900368 - FRAM SINE Alu -12 164 26 2033 193 14 8 chr3 123624650 123625013 -103899565 + MLT1A1 LTR MaLR 1 365 0 2006 179 94 32 chr3 123625775 123626243 -103898335 - MLT1D LTR MaLR -8 497 1 345 309 32 24 chr3 123626525 123626651 -103897927 - MLT1K LTR MaLR -447 141 15 183 300 0 0 chr3 123627440 123627500 -103897078 - L3b LINE CR1 -380 1203 1144 32 26 0 0 chr3 123627682 123627721 -103896857 + AT_rich Low_complexity Low_complexity 1 39 0 17721 181 21 72 chr3 123627730 123628658 -103895920 + L1M1 LINE L1 14 987 -6663 1898 111 13 63 chr3 123628658 123628973 -103895605 - AluSx SINE Alu -13 299 1 17721 181 21 72 chr3 123628973 123629157 -103895421 + L1M1 LINE L1 987 1179 -6471 2147 114 0 0 chr3 123629157 123629458 -103895120 - AluSg SINE Alu 0 301 1 884 124 0 0 chr3 123629467 123629596 -103894982 - L1PB1 LINE L1 -1 6150 6022 17721 181 21 72 chr3 123629596 123630612 -103893966 + L1M1 LINE L1 1187 2253 -5397 1855 164 3 7 chr3 123630612 123630910 -103893668 - AluJo SINE Alu -15 297 1 17721 181 21 72 chr3 123630910 123632338 -103892240 + L1M1 LINE L1 2253 3752 -3898 360 109 0 0 chr3 123632338 123632393 -103892185 - Alu SINE Alu 0 302 248 17721 181 21 72 chr3 123632393 123632415 -103892163 + L1M1 LINE L1 3752 3774 -3876 2083 129 10 0 chr3 123632415 123632718 -103891860 - AluSx SINE Alu -6 306 1 17721 181 21 72 chr3 123632718 123634092 -103890486 + L1M1 LINE L1 3774 5216 -2434 2145 80 7 27 chr3 123634092 123634393 -103890185 + AluY SINE Alu 1 295 -16 17721 181 21 72 chr3 123634393 123635093 -103889485 + L1M1 LINE L1 5216 5950 -1700 1867 117 3 73 chr3 123635093 123635410 -103889168 - AluSx SINE Alu -17 295 1 17721 181 21 72 chr3 123635410 123635503 -103889075 + L1M1 LINE L1 5950 6046 -1604 1737 192 0 7 chr3 123635503 123635805 -103888773 + AluJb SINE Alu 13 312 0 17721 181 21 72 chr3 123635805 123636411 -103888167 + L1M1 LINE L1 6046 6681 -969 2404 70 0 13 chr3 123636411 123636709 -103887869 + AluY SINE Alu 1 294 -17 17721 181 21 72 chr3 123636709 123637729 -103886849 + L1M1 LINE L1 6681 7751 101 366 23 0 0 chr3 123637729 123637772 -103886806 + (TA)n Simple_repeat Simple_repeat 1 43 0 2243 111 3 0 chr3 123637772 123638069 -103886509 - AluSp SINE Alu -15 298 1 17721 181 21 72 chr3 123638069 123638290 -103886288 + L1M1 LINE L1 7750 6868 -782 1190 54 0 0 chr3 123638290 123638463 -103886115 + L1PA3 LINE L1 5991 6166 0 17721 181 21 72 chr3 123638463 123638497 -103886081 + L1M1 LINE L1 6867 6901 -749 474 229 15 119 chr3 123638983 123639184 -103885394 - LTR67 LTR ERVL -3 554 375 5208 113 20 8 chr3 123639447 123640281 -103884297 + L1MA2 LINE L1 5461 6304 0 22 0 0 0 chr3 123640281 123640303 -103884275 + AT_rich Low_complexity Low_complexity 1 22 0 572 246 112 85 chr3 123640319 123640333 -103884245 - L1MC5 LINE L1 -279 7682 7670 1932 127 69 61 chr3 123640333 123640694 -103883884 - THE1B LTR MaLR 0 364 1 572 246 112 85 chr3 123640694 123641081 -103883497 - L1MC5 LINE L1 -291 7670 7270 202 0 29 57 chr3 123641454 123641489 -103883089 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 25569 32 1 0 chr3 123641489 123645351 -103879227 - L1PA4 LINE L1 -13 6142 2279 27 0 0 0 chr3 123645494 123645521 -103879057 + AT_rich Low_complexity Low_complexity 1 27 0 921 204 33 0 chr3 123645633 123645814 -103878764 - MER20 DNA MER1_type -1 218 32 482 319 26 40 chr3 123645859 123646132 -103878446 - L1ME3A LINE L1 -314 5856 5588 257 372 128 22 chr3 123646451 123646631 -103877947 - L2 LINE L2 -1 3271 3073 495 191 66 66 chr3 123646694 123646846 -103877732 - L2 LINE L2 0 3313 3162 394 254 36 74 chr3 123647107 123647536 -103877042 - L1MC5 LINE L1 -33 7928 7515 1884 147 0 38 chr3 123647536 123647855 -103876723 - AluJo SINE Alu -5 307 1 394 254 36 74 chr3 123647855 123647869 -103876709 - L1MC5 LINE L1 -446 7515 7502 1771 150 68 37 chr3 123647942 123648296 -103876282 + THE1C LTR MaLR 6 370 -5 315 238 53 117 chr3 123648469 123648751 -103875827 - L1MC5 LINE L1 -791 7170 6907 201 283 38 0 chr3 123649261 123649314 -103875264 - MIR3 SINE MIR -34 174 120 300 253 22 11 chr3 123649374 123649465 -103875113 + L2 LINE L2 1642 1733 -1581 1480 310 101 9 chr3 123649503 123650321 -103874257 + L2 LINE L2 2266 3150 -163 197 262 0 0 chr3 123650398 123650440 -103874138 + L2 LINE L2 3167 3208 -105 4292 175 35 21 chr3 123650490 123650698 -103873880 + L1PB4 LINE L1 4404 4608 -1548 7465 30 7 0 chr3 123650698 123651721 -103872857 + L1PA4 LINE L1 5126 6154 -1 4292 175 35 21 chr3 123651721 123652874 -103871704 + L1PB4 LINE L1 4608 5795 -361 240 35 0 0 chr3 123652874 123652903 -103871675 + (TA)n Simple_repeat Simple_repeat 1 29 0 4292 175 35 21 chr3 123652903 123652964 -103871614 + L1PB4 LINE L1 5795 5854 -302 931 191 37 37 chr3 123653085 123653326 -103871252 + L1PB4 LINE L1 5916 6156 0 257 303 38 61 chr3 123653916 123654048 -103870530 + MLT1J LTR MaLR 305 433 -78 995 178 0 6 chr3 123654072 123654235 -103870343 - AluJb SINE Alu -13 299 138 2343 128 14 3 chr3 123654235 123654588 -103869990 + THE1B LTR MaLR 1 357 -7 7964 158 27 32 chr3 123654616 123656113 -103868465 + THE1B-int LTR MaLR 9 1497 -83 2359 141 6 3 chr3 123656130 123656493 -103868085 + THE1B LTR MaLR 1 364 0 889 90 8 0 chr3 123656507 123656629 -103867949 - AluJb SINE Alu -179 133 11 30 45 0 0 chr3 123656717 123656761 -103867817 + AT_rich Low_complexity Low_complexity 1 44 0 3836 169 34 65 chr3 123657721 123657834 -103866744 - L1MB7 LINE L1 -11 6173 6058 1531 88 5 0 chr3 123657834 123658028 -103866550 - AluSp SINE Alu -19 294 100 3836 169 34 65 chr3 123658028 123658924 -103865654 - L1MB7 LINE L1 -126 6058 5195 4113 139 11 3 chr3 123658927 123659576 -103865002 - L1PA15 LINE L1 0 6165 5512 3819 199 27 29 chr3 123659576 123660240 -103864338 - L1PA15 LINE L1 -1106 5040 4376 2065 120 7 7 chr3 123660240 123660539 -103864039 - AluSx SINE Alu -13 299 1 3819 199 27 29 chr3 123660539 123660740 -103863838 - L1PA15 LINE L1 -1770 4376 4175 2160 115 10 0 chr3 123660740 123661036 -103863542 - AluSq SINE Alu -14 299 1 3819 199 27 29 chr3 123661036 123661086 -103863492 - L1PA15 LINE L1 -1971 4175 4126 817 153 0 0 chr3 123661123 123661241 -103863337 - FLAM_C SINE Alu -15 118 1 4862 205 32 71 chr3 123661270 123661700 -103862878 - L1MB7 LINE L1 -978 5168 4723 498 111 0 0 chr3 123661700 123661772 -103862806 + MADE1 DNA Mariner 9 80 0 4862 205 32 71 chr3 123661772 123662570 -103862008 - L1MB7 LINE L1 -1423 4723 3935 1363 178 117 14 chr3 123662570 123662851 -103861727 - AluJo SINE Alu -2 310 1 4862 205 32 71 chr3 123662851 123663087 -103861491 - L1MB7 LINE L1 -2211 3935 3691 1909 165 0 0 chr3 123663110 123663407 -103861171 - AluSx SINE Alu -13 299 3 349 233 155 16 chr3 123663428 123663525 -103861053 - L1MC4 LINE L1 -7 8035 7914 531 45 0 0 chr3 123663525 123663591 -103860987 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 349 233 155 16 chr3 123663591 123663622 -103860956 - L1MC4 LINE L1 -128 7914 7889 424 358 22 8 chr3 123663938 123664072 -103860506 + L2 LINE L2 3137 3272 0 2198 167 38 9 chr3 123664245 123664665 -103859913 + MSTB1 LTR MaLR 1 432 0 2258 92 0 16 chr3 123666121 123666427 -103858151 + AluSx SINE Alu 1 301 -11 1685 129 28 8 chr3 123666518 123666773 -103857805 - AluJb SINE Alu -52 260 1 381 286 51 0 chr3 123666816 123666914 -103857664 + MIR SINE MIR 41 143 -65 271 183 50 17 chr3 123667133 123667193 -103857385 + MER58 DNA MER1_type 2359 2420 0 21 0 0 0 chr3 123667193 123667214 -103857364 + AT_rich Low_complexity Low_complexity 1 21 0 360 283 0 11 chr3 123667214 123667306 -103857272 - L1MC4 LINE L1 -1339 6703 6613 309 188 0 0 chr3 123667306 123667391 -103857187 + (TA)n Simple_repeat Simple_repeat 2 86 0 472 307 35 45 chr3 123667474 123667676 -103856902 - MIR SINE MIR -45 217 18 225 0 0 0 chr3 123667829 123667854 -103856724 + (TG)n Simple_repeat Simple_repeat 1 25 0 306 241 99 14 chr3 123668490 123668631 -103855947 - L1ME3A LINE L1 -30 6140 5988 292 95 0 0 chr3 123670774 123670816 -103853762 - L1P3 LINE L1 -343 5811 5770 1976 167 50 115 chr3 123670822 123671498 -103853080 - MER65-int LTR ERV1 -2856 2015 1384 189 0 0 0 chr3 123671542 123671563 -103853015 + (TG)n Simple_repeat Simple_repeat 2 22 0 1806 152 16 0 chr3 123671591 123671938 -103852640 - L1PA16 LINE L1 -10 6156 5770 264 224 0 0 chr3 123671948 123672006 -103852572 - L1MD2 LINE L1 -163 6196 6139 660 57 0 0 chr3 123672099 123672187 -103852391 - L1PA5 LINE L1 -1 6153 6066 3441 110 8 11 chr3 123672188 123672845 -103851733 - L1P4 LINE L1 -396 5770 5111 259 254 0 0 chr3 123673431 123673490 -103851088 + (TATATG)n Simple_repeat Simple_repeat 2 60 0 2098 131 0 0 chr3 123674012 123674303 -103850275 - AluSx SINE Alu -21 291 1 24 0 0 0 chr3 123675014 123675038 -103849540 + AT_rich Low_complexity Low_complexity 1 24 0 426 246 92 28 chr3 123675698 123675840 -103848738 + MIR SINE MIR 78 228 -34 1975 135 10 0 chr3 123676246 123676535 -103848043 - AluSx SINE Alu -20 292 1 183 100 0 0 chr3 123678342 123678372 -103846206 + (TG)n Simple_repeat Simple_repeat 1 30 0 309 89 0 0 chr3 123678372 123678417 -103846161 + (GA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr3 123678439 123678460 -103846118 + AT_rich Low_complexity Low_complexity 1 21 0 42 48 0 0 chr3 123678793 123678856 -103845722 + AT_rich Low_complexity Low_complexity 1 63 0 31 26 0 0 chr3 123678933 123678971 -103845607 + AT_rich Low_complexity Low_complexity 1 38 0 621 200 77 108 chr3 123679029 123679487 -103845091 - L1MD3 LINE L1 -6 8036 7631 1272 266 77 14 chr3 123679806 123680224 -103844354 - LTR40a LTR ERVL 0 519 76 1997 120 0 38 chr3 123680492 123680808 -103843770 + AluSg SINE Alu 1 304 -6 285 349 71 8 chr3 123680851 123680977 -103843601 + L2 LINE L2 3134 3267 -5 338 309 114 72 chr3 123681170 123681322 -103843256 - L1M4 LINE L1 -2001 4145 4001 14361 139 24 8 chr3 123681322 123682546 -103842032 - Tigger1 DNA MER2_type 0 2418 1216 2365 81 3 0 chr3 123682546 123682843 -103841735 - AluY SINE Alu -13 298 1 14361 139 24 8 chr3 123682843 123683995 -103840583 - Tigger1 DNA MER2_type -1202 1216 3 2182 132 0 0 chr3 123683995 123684298 -103840280 - AluSx SINE Alu -9 303 1 338 309 114 72 chr3 123684298 123684380 -103840198 - L1M4 LINE L1 -2144 4002 3900 637 175 36 0 chr3 123684538 123684675 -103839903 + L1MA5A LINE L1 6156 6297 0 2118 149 24 2 chr3 123684680 123685104 -103839474 + L1M2 LINE L1 4317 4749 -1397 21 0 0 0 chr3 123685426 123685447 -103839131 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr3 123685510 123685561 -103839017 + AT_rich Low_complexity Low_complexity 1 51 0 13564 192 22 5 chr3 123685866 123690877 -103833701 - L1P5 LINE L1 -376 6491 1392 655 216 60 10 chr3 123690854 123691053 -103833525 - L1P5 LINE L1 -6647 216 8 * 2179 193 21 37 chr3 123691100 123691569 -103833009 + L1M2 LINE L1 4849 5313 -961 297 51 0 0 chr3 123691569 123691608 -103832970 + (CA)n Simple_repeat Simple_repeat 2 40 0 2179 193 21 37 chr3 123691608 123691824 -103832754 + L1M2 LINE L1 5313 5531 -743 403 268 21 0 chr3 123691932 123692029 -103832549 - FRAM SINE Alu -77 99 1 1796 151 7 13 chr3 123692041 123692339 -103832239 - AluSx SINE Alu -14 298 3 801 125 8 8 chr3 123692458 123692578 -103832000 + FLAM_C SINE Alu 14 133 -10 13638 41 3 0 chr3 123692639 123695094 -103829484 - L1PA3 LINE L1 0 6155 3699 6002 56 14 4 chr3 123695213 123696046 -103828532 - L1PA3 LINE L1 -3472 2674 1833 16957 85 4 0 chr3 123696049 123698441 -103826137 + L1P2 LINE L1 1 2401 -3745 * 19197 58 3 1 chr3 123698434 123701272 -103823306 + L1P2 LINE L1 2799 5641 -513 816 82 8 4 chr3 123701393 123701497 -103823081 + L1PA6 LINE L1 2967 3076 -3070 7028 60 1 1 chr3 123701497 123702553 -103822025 + L1PA6 LINE L1 5097 6151 -3 816 82 8 4 chr3 123702553 123702576 -103822002 + L1PA6 LINE L1 3076 3097 -3049 395 290 73 16 chr3 123703190 123703528 -103821050 + L1M1 LINE L1 4727 5651 -653 21 0 0 0 chr3 123703669 123703690 -103820888 + AT_rich Low_complexity Low_complexity 1 21 0 984 226 47 47 chr3 123704350 123704629 -103819949 - MER31-int LTR ERV1 -92 4844 4566 294 183 24 61 chr3 123704723 123704805 -103819773 - MER31-int LTR ERV1 -375 4561 4483 2338 185 30 108 chr3 123704872 123705585 -103818993 - MER31-int LTR ERV1 -466 4470 3814 1253 202 105 98 chr3 123705594 123706346 -103818232 + LTR1B LTR ERV1 1 757 -69 736 215 5 82 chr3 123706381 123706555 -103818023 + MLT1A2 LTR MaLR 173 328 -46 1570 152 97 4 chr3 123706555 123706824 -103817754 - AluSx SINE Alu -18 294 1 736 215 5 82 chr3 123706824 123706868 -103817710 + MLT1A2 LTR MaLR 328 374 0 706 249 23 42 chr3 123706868 123707568 -103817010 - MER31-int LTR ERV1 -1530 3406 2638 26292 49 1 15 chr3 123707635 123711181 -103813397 + L1PA5 LINE L1 3 3499 -2647 4286 67 2 4 chr3 123711281 123711836 -103812742 + L1PA5 LINE L1 5600 6153 -1 9971 136 26 24 chr3 123711836 123713659 -103810919 - L1P LINE L1 -4309 1837 11 265 268 42 87 chr3 123715148 123715337 -103809241 - MIR SINE MIR -53 209 25 2364 91 3 0 chr3 123715463 123715759 -103808819 + AluSx SINE Alu 1 297 -15 11211 160 45 11 chr3 123716155 123718198 -103806380 - L1M1 LINE L1 -4978 2587 617 2507 62 0 3 chr3 123718198 123718504 -103806074 - AluY SINE Alu -6 305 1 1594 136 103 11 chr3 123718508 123718780 -103805798 - AluSq SINE Alu -16 297 1 11211 160 45 11 chr3 123718780 123718859 -103805719 - L1M1 LINE L1 -6950 615 13 1631 227 99 78 chr3 123718883 123719508 -103805070 - MLT1E1 LTR MaLR 0 654 17 278 229 124 19 chr3 123719937 123720042 -103804536 + MLT1K LTR MaLR 399 514 -74 249 234 0 0 chr3 123720050 123720114 -103804464 + (CTA)n Simple_repeat Simple_repeat 1 64 0 811 88 0 0 chr3 123720229 123720331 -103804247 - AluSg/x SINE Alu -15 295 194 821 211 11 11 chr3 123720492 123720682 -103803896 - MLT2C2 LTR ERVL -147 317 128 1236 208 9 0 chr3 123720682 123720936 -103803642 + AluJo SINE Alu 50 305 0 449 111 89 22 chr3 123720949 123721039 -103803539 - MLT2C2 LTR ERVL -368 96 1 384 288 20 51 chr3 123721381 123721457 -103803121 - MIR SINE MIR -62 146 83 2078 67 54 54 chr3 123721457 123721754 -103802824 - AluY SINE Alu -14 297 1 384 288 20 51 chr3 123721754 123721819 -103802759 - MIR SINE MIR -125 83 18 322 250 106 43 chr3 123722352 123722515 -103802063 + MIR SINE MIR 44 219 -43 38528 72 7 2 chr3 123722536 123728660 -103795918 + L1PA5 LINE L1 4 6154 0 328 171 24 0 chr3 123729138 123729220 -103795358 + (TATG)n Simple_repeat Simple_repeat 3 86 0 4868 149 63 17 chr3 123729315 123729838 -103794740 - L1PA16 LINE L1 -6 6160 5663 2087 123 7 7 chr3 123729838 123730140 -103794438 - AluSx SINE Alu -10 302 1 4868 149 63 17 chr3 123730140 123730735 -103793843 - L1PA16 LINE L1 -503 5663 5006 2118 161 8 21 chr3 123730747 123731131 -103793447 - L1PA16 LINE L1 -13 6153 5775 2647 185 93 42 chr3 123731542 123731850 -103792728 - L1MB4 LINE L1 0 6180 5889 920 131 0 0 chr3 123731850 123731980 -103792598 - FLAM_C SINE Alu 0 133 4 2647 185 93 42 chr3 123731980 123732042 -103792536 - L1MB4 LINE L1 -291 5889 5832 198 103 0 0 chr3 123732042 123732071 -103792507 + (TA)n Simple_repeat Simple_repeat 1 29 0 2647 185 93 42 chr3 123732071 123732408 -103792170 - L1MB4 LINE L1 -348 5832 5436 270 308 37 9 chr3 123732894 123733001 -103791577 - LTR16A LTR ERVL -10 440 331 476 271 40 72 chr3 123733076 123733416 -103791162 - HERV16 LTR ERVL -1333 3663 3379 741 259 61 8 chr3 123733440 123733687 -103790891 - HERV16 LTR ERVL -3878 1118 859 313 305 111 53 chr3 123733818 123734044 -103790534 - MIR SINE MIR -1 261 23 842 289 28 4 chr3 123734803 123735056 -103789522 - MIR SINE MIR -1 261 3 210 153 47 35 chr3 123735367 123735452 -103789126 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 193 374 113 20 chr3 123736868 123736960 -103787618 + MIR SINE MIR 48 130 -132 2447 78 0 7 chr3 123736960 123737268 -103787310 - AluY SINE Alu -5 306 1 193 374 113 20 chr3 123737268 123737370 -103787208 + MIR SINE MIR 130 260 -2 265 340 0 0 chr3 123737495 123737589 -103786989 + (CA)n Simple_repeat Simple_repeat 1 94 0 381 267 34 68 chr3 123737697 123737843 -103786735 - MIR SINE MIR -118 144 4 842 300 94 57 chr3 123738036 123738512 -103786066 - MLT1K LTR MaLR 0 588 95 1000 221 30 13 chr3 123738690 123738921 -103785657 - MLT1A1 LTR MaLR -8 357 123 247 223 21 106 chr3 123738917 123739011 -103785567 - MLT2D LTR ERVL -189 225 140 * 12207 167 71 16 chr3 123739011 123739324 -103785254 - L1P5 LINE L1 -702 5506 5212 261 0 0 0 chr3 123739324 123739353 -103785225 + (TTTA)n Simple_repeat Simple_repeat 2 30 0 12207 167 71 16 chr3 123739353 123740063 -103784515 - L1P5 LINE L1 -996 5212 4543 249 33 0 0 chr3 123740063 123740093 -103784485 + (TTTTA)n Simple_repeat Simple_repeat 3 32 0 12207 167 71 16 chr3 123740093 123740788 -103783790 - L1P5 LINE L1 -1665 4543 3888 180 0 0 0 chr3 123740788 123740808 -103783770 + (TTG)n Simple_repeat Simple_repeat 2 21 0 12207 167 71 16 chr3 123740808 123742368 -103782210 - L1P5 LINE L1 -2320 3888 2416 2645 94 3 0 chr3 123742368 123742720 -103781858 + THE1A LTR MaLR 1 353 -2 12207 167 71 16 chr3 123742720 123744630 -103779948 - L1P5 LINE L1 -3792 2416 8 9327 173 16 2 chr3 123744602 123746217 -103778361 - L1PBa LINE L1 -5224 1639 3 * 278 287 32 11 chr3 123746348 123746442 -103778136 + MIR SINE MIR 96 191 -71 8371 226 70 40 chr3 123746718 123746736 -103777842 - L1MDa LINE L1 -751 5789 5773 2049 138 0 13 chr3 123746736 123747041 -103777537 - AluY SINE Alu -10 301 1 8371 226 70 40 chr3 123747041 123747520 -103777058 - L1MDa LINE L1 -767 5773 5309 1409 197 137 13 chr3 123747520 123747901 -103776677 + MSTA LTR MaLR 1 428 0 8371 226 70 40 chr3 123747901 123748228 -103776350 - L1MDa LINE L1 -1231 5309 4993 1841 238 38 40 chr3 123748228 123748749 -103775829 + MLT2B1 LTR ERVL 1 520 0 8371 226 70 40 chr3 123748749 123749429 -103775149 - L1MDa LINE L1 -1547 4993 4334 2022 116 32 0 chr3 123749429 123749713 -103774865 - AluSg SINE Alu -14 296 4 8371 226 70 40 chr3 123749713 123753677 -103770901 - L1MDa LINE L1 -2206 4334 185 390 269 104 26 chr3 123753728 123753921 -103770657 - HAL1 LINE L1 -2252 255 48 430 238 0 0 chr3 123753933 123754017 -103770561 - AluJ/FLAM SINE Alu -228 84 1 1054 226 158 20 chr3 123754141 123754534 -103770044 - LTR50 LTR ERVL 0 795 349 1045 264 48 29 chr3 123754580 123754890 -103769688 + L2 LINE L2 2495 2810 -504 789 327 59 50 chr3 123754992 123755469 -103769109 + L2 LINE L2 2818 3298 -15 23 0 0 0 chr3 123755703 123755726 -103768852 + AT_rich Low_complexity Low_complexity 1 23 0 1872 193 84 73 chr3 123757889 123758437 -103766141 + MLT2B3 LTR ERVL 1 554 0 1491 187 42 7 chr3 123758581 123758864 -103765714 - AluJb SINE Alu -19 293 1 2386 53 0 3 chr3 123758945 123759252 -103765326 - AluY SINE Alu 0 306 1 370 215 0 13 chr3 123759306 123759385 -103765193 - MER96B DNA MER1_type? -17 400 323 319 71 89 9 chr3 123759385 123759497 -103765081 + (TA)n Simple_repeat Simple_repeat 2 122 0 2349 80 3 3 chr3 123759497 123759797 -103764781 - AluY SINE Alu -11 300 1 1262 184 20 44 chr3 123759797 123760139 -103764439 - MER96B DNA MER1_type? -83 334 1 264 319 246 11 chr3 123760409 123760685 -103763893 - L2 LINE L2 -1 3312 2972 1224 209 82 3 chr3 123760922 123761277 -103763301 + L1ME1 LINE L1 4335 4717 -1429 * 2628 212 68 59 chr3 123761275 123761953 -103762625 + L1ME1 LINE L1 5378 6065 -101 1727 134 91 0 chr3 123761953 123762229 -103762349 - AluSx SINE Alu -8 304 4 2628 212 68 59 chr3 123762229 123762324 -103762254 + L1ME1 LINE L1 6065 6158 -8 4446 158 22 17 chr3 123762445 123763277 -103761301 - L1PB4 LINE L1 0 6156 5321 864 215 51 0 chr3 123763339 123763516 -103761062 + MER5A DNA MER1_type 1 186 -3 456 273 56 7 chr3 123763621 123763764 -103760814 + MIR SINE MIR 96 245 -17 192 40 0 0 chr3 123764246 123764271 -103760307 + (TG)n Simple_repeat Simple_repeat 1 25 0 1750 123 0 7 chr3 123764982 123765251 -103759327 - L1PB1 LINE L1 -3 6148 5882 287 286 84 34 chr3 123765581 123765837 -103758741 + LTR16B LTR ERVL 170 450 -14 451 271 117 69 chr3 123766004 123766037 -103758541 + MIR SINE MIR 2 32 -230 2161 100 0 0 chr3 123766037 123766349 -103758229 + AluY SINE Alu 1 312 0 451 271 117 69 chr3 123766349 123766561 -103758017 + MIR SINE MIR 32 260 -2 21 0 0 0 chr3 123766663 123766684 -103757894 + AT_rich Low_complexity Low_complexity 1 21 0 1902 173 0 0 chr3 123766684 123766991 -103757587 + AluSx SINE Alu 1 307 -5 647 164 0 116 chr3 123767013 123767159 -103757419 - FLAM_C SINE Alu -3 130 2 1308 229 35 29 chr3 123767162 123767537 -103757041 - L1ME1 LINE L1 -56 6110 5734 928 212 16 69 chr3 123767537 123767638 -103756940 - MLT1A2 LTR MaLR 0 374 354 4201 160 55 81 chr3 123767638 123768737 -103755841 + MER11C LTR ERVK 1 1071 0 928 212 16 69 chr3 123768737 123768896 -103755682 - MLT1A2 LTR MaLR -20 354 188 772 221 14 22 chr3 123768977 123769343 -103755235 - L1ME1 LINE L1 -1035 5111 4677 230 28 0 56 chr3 123770726 123770762 -103753816 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 248 343 57 0 chr3 123771581 123771686 -103752892 - MIR SINE MIR -65 197 87 25 31 0 0 chr3 123772146 123772178 -103752400 + AT_rich Low_complexity Low_complexity 1 32 0 4542 154 44 14 chr3 123773329 123773894 -103750684 + L1PB4 LINE L1 4836 5382 -774 2172 115 57 14 chr3 123773894 123774243 -103750335 - THE1B LTR MaLR 0 364 1 11749 95 4 1 chr3 123774243 123775817 -103748761 - THE1B-int LTR MaLR 0 1580 1 2060 99 51 73 chr3 123775817 123776189 -103748389 - THE1B LTR MaLR 0 364 1 4542 154 44 14 chr3 123776189 123776858 -103747720 + L1PB4 LINE L1 5381 6106 -50 613 134 52 0 chr3 123776917 123777014 -103747564 + FRAM SINE Alu 57 158 -18 2269 101 0 0 chr3 123777252 123777559 -103747019 - AluY SINE Alu -4 307 1 21 0 0 0 chr3 123778350 123778371 -103746207 + AT_rich Low_complexity Low_complexity 1 21 0 260 255 41 51 chr3 123778910 123779008 -103745570 + MIR SINE MIR 17 113 -149 432 309 19 25 chr3 123779052 123779214 -103745364 + MIR SINE MIR 102 262 0 454 71 0 192 chr3 123779695 123779794 -103744784 + MADE1 DNA Mariner 1 80 0 23 33 0 0 chr3 123780274 123780304 -103744274 + AT_rich Low_complexity Low_complexity 1 30 0 289 309 78 69 chr3 123780958 123781175 -103743403 + MIR SINE MIR 32 250 -12 424 261 50 61 chr3 123782126 123782306 -103742272 + MER5B DNA MER1_type 1 178 0 292 263 242 0 chr3 123783246 123783341 -103741237 - MIR3 SINE MIR -52 156 39 23 0 0 0 chr3 123784125 123784148 -103740430 + AT_rich Low_complexity Low_complexity 1 23 0 6247 183 26 116 chr3 123784149 123785913 -103738665 - L1 LINE L1 -1330 4816 3271 195 42 0 0 chr3 123785913 123785937 -103738641 + (TTTTC)n Simple_repeat Simple_repeat 4 27 0 6247 183 26 116 chr3 123785937 123786277 -103738301 - L1 LINE L1 -2875 3271 2902 5896 148 44 36 chr3 123786277 123788139 -103736439 + L1PB1 LINE L1 4281 6149 -2 477 276 120 14 chr3 123788193 123788410 -103736168 - L2 LINE L2 -85 3228 2989 2088 117 0 0 chr3 123788534 123788816 -103735762 + AluSq SINE Alu 21 302 -11 315 311 113 20 chr3 123789067 123789218 -103735360 - LTR67 LTR ERVL -385 172 8 186 341 24 0 chr3 123792327 123792412 -103732166 - MIR SINE MIR -1 261 175 21 36 0 0 chr3 123792549 123792577 -103732001 + AT_rich Low_complexity Low_complexity 1 28 0 1889 151 0 16 chr3 123793061 123793378 -103731200 - AluSx SINE Alu 0 312 1 253 24 73 0 chr3 123793475 123793516 -103731062 + A-rich Low_complexity Low_complexity 2 45 0 23 68 0 0 chr3 123794418 123794462 -103730116 + AT_rich Low_complexity Low_complexity 1 44 0 226 283 0 0 chr3 123794612 123794665 -103729913 + L2 LINE L2 3258 3310 -3 210 279 0 0 chr3 123795241 123795302 -103729276 + GA-rich Low_complexity Low_complexity 2 62 0 677 229 72 18 chr3 123795317 123795483 -103729095 - MIR SINE MIR -17 245 71 249 146 21 0 chr3 123795577 123795625 -103728953 + (TA)n Simple_repeat Simple_repeat 2 50 0 1729 191 0 0 chr3 123797076 123797405 -103727173 - AluSx SINE Alu 0 312 1 1866 192 26 26 chr3 123798011 123798165 -103726413 + MLT1B LTR MaLR 1 154 -236 3824 142 29 1 chr3 123798165 123798822 -103725756 + L1MA4 LINE L1 5622 6296 -4 1866 192 26 26 chr3 123798822 123799057 -103725521 + MLT1B LTR MaLR 153 390 0 1697 138 125 10 chr3 123799057 123799346 -103725232 - MER47A DNA MER2_type 0 366 45 287 157 60 24 chr3 123799711 123799794 -103724784 - L1M4 LINE L1 -1102 5044 4959 240 238 0 0 chr3 123799807 123799870 -103724708 + (TA)n Simple_repeat Simple_repeat 1 63 0 1061 236 12 41 chr3 123799875 123800121 -103724457 - MER8 DNA MER2_type 0 239 1 467 284 45 15 chr3 123800392 123800526 -103724052 + MIR SINE MIR 78 215 -47 760 217 11 69 chr3 123801307 123801374 -103723204 - MER45A DNA AcHobo -1403 178 109 2148 93 4 0 chr3 123801374 123801698 -103722880 - AluY SINE Alu 0 325 1 760 217 11 69 chr3 123801698 123801818 -103722760 - MER45A DNA AcHobo -1472 109 1 380 271 127 42 chr3 123802217 123802383 -103722195 + MIR SINE MIR 80 259 -3 2144 123 45 28 chr3 123802503 123802861 -103721717 - THE1B LTR MaLR 0 364 1 2257 114 0 0 chr3 123802940 123803230 -103721348 + AluSg SINE Alu 2 291 -19 800 99 0 33 chr3 123803340 123803491 -103721087 + (TTCCC)n Simple_repeat Simple_repeat 5 150 0 205 333 120 28 chr3 123803662 123803770 -103720808 - L2 LINE L2 -259 3054 2937 24 32 0 0 chr3 123803826 123803857 -103720721 + AT_rich Low_complexity Low_complexity 1 31 0 193 388 0 12 chr3 123804212 123804292 -103720286 - MIR SINE MIR -155 107 29 2105 120 0 7 chr3 123804353 123804653 -103719925 - AluSx SINE Alu 0 312 15 1005 226 116 102 chr3 123804749 123805281 -103719297 + MLT1H1 LTR MaLR 2 553 -2 546 266 177 22 chr3 123805930 123806156 -103718422 - MIR SINE MIR 0 262 2 1782 95 30 0 chr3 123806678 123806941 -103717637 + L1MA1 LINE L1 6018 6288 -14 222 37 0 0 chr3 123806945 123806972 -103717606 + (T)n Simple_repeat Simple_repeat 1 27 0 2563 49 0 3 chr3 123807046 123807350 -103717228 + AluY SINE Alu 1 303 -8 321 301 70 26 chr3 123808153 123808309 -103716269 + Charlie8 DNA MER1_type 64 226 -2191 954 167 15 5 chr3 123808321 123808525 -103716053 - L1MA9 LINE L1 -1 6311 6106 736 166 86 13 chr3 123808525 123808676 -103715902 - MER2 DNA MER2_type -2 343 182 1781 104 100 7 chr3 123808678 123808957 -103715621 + THE1B LTR MaLR 1 305 -59 2477 42 3 10 chr3 123808957 123809263 -103715315 + AluY SINE Alu 1 304 -7 883 182 13 0 chr3 123809266 123809420 -103715158 - MER2 DNA MER2_type -189 156 1 1815 138 16 7 chr3 123809420 123809725 -103714853 - L1MA9 LINE L1 -203 6109 5802 231 227 23 0 chr3 123809728 123809772 -103714806 + Charlie8 DNA MER1_type 210 254 -2163 261 316 68 45 chr3 123810249 123810426 -103714152 + MIR3 SINE MIR 16 196 -12 2224 174 172 12 chr3 123811716 123812204 -103712374 - MLT1F1 LTR MaLR -1 566 1 753 314 142 37 chr3 123812275 123812543 -103712035 - LTR33 LTR ERVL 0 521 283 2394 88 0 3 chr3 123812543 123812849 -103711729 + AluSp SINE Alu 1 305 -8 753 314 142 37 chr3 123812849 123813045 -103711533 - LTR33 LTR ERVL -238 283 8 2333 81 3 0 chr3 123813396 123813692 -103710886 - AluSx SINE Alu -15 297 1 43 0 0 0 chr3 123814792 123814835 -103709743 + AT_rich Low_complexity Low_complexity 1 43 0 2749 119 26 0 chr3 123814835 123815265 -103709313 - L1PA16 LINE L1 -9 6157 5717 228 337 69 0 chr3 123815267 123815368 -103709210 - L2 LINE L2 -19 3253 3146 383 321 86 7 chr3 123816709 123816849 -103707729 - MIR3 SINE MIR -6 202 52 764 343 40 37 chr3 123817317 123817746 -103706832 - MLT1J LTR MaLR -80 431 2 2108 148 3 8 chr3 123817955 123818313 -103706265 - L1PA16 LINE L1 -16 6150 5795 196 320 133 13 chr3 123818503 123818578 -103706000 + L2 LINE L2 3147 3230 -42 473 306 151 0 chr3 123819765 123819964 -103704614 + MIR SINE MIR 33 261 -1 330 250 50 58 chr3 123820048 123820168 -103704410 + MER94 DNA DNA 1 119 -15 1588 171 7 77 chr3 123820469 123820673 -103703905 - MLT1B LTR MaLR -35 355 185 1542 183 13 32 chr3 123820673 123820984 -103703594 - AluJo SINE Alu -3 309 5 1588 171 7 77 chr3 123820984 123821157 -103703421 - MLT1B LTR MaLR -205 185 1 23 33 0 0 chr3 123821470 123821500 -103703078 + AT_rich Low_complexity Low_complexity 1 30 0 5445 188 29 15 chr3 123821530 123823401 -103701177 - L1PA15 LINE L1 -7 6158 4240 2339 34 41 14 chr3 123823401 123823693 -103700885 - AluY SINE Alu -11 300 1 5445 188 29 15 chr3 123823693 123823783 -103700795 - L1PA15 LINE L1 -1925 4240 4153 180 200 0 0 chr3 123823966 123824016 -103700562 + (TA)n Simple_repeat Simple_repeat 2 51 0 345 48 0 0 chr3 123825419 123825461 -103699117 + HERV17 LTR ERV1 8581 8622 -4 2518 60 0 27 chr3 123825464 123825797 -103698781 + LTR17 LTR ERV1 1 324 -456 1495 145 0 0 chr3 123826684 123826898 -103697680 + AluJb SINE Alu 84 297 -15 27 0 0 0 chr3 123827731 123827758 -103696820 + AT_rich Low_complexity Low_complexity 1 27 0 21 82 0 0 chr3 123827804 123827853 -103696725 + AT_rich Low_complexity Low_complexity 1 49 0 742 297 9 9 chr3 123827882 123828094 -103696484 - MIR SINE MIR -38 224 13 414 319 102 0 chr3 123828386 123828543 -103696035 - MIR SINE MIR -59 203 31 293 290 65 19 chr3 123829315 123829422 -103695156 - MIR3 SINE MIR -8 200 89 203 260 0 0 chr3 123829689 123829739 -103694839 + (CATATA)n Simple_repeat Simple_repeat 3 52 0 458 275 8 0 chr3 123829892 123830012 -103694566 + MLT1F1 LTR MaLR 4 124 -443 820 291 45 9 chr3 123830260 123830480 -103694098 + MIR SINE MIR 14 241 -21 642 229 116 6 chr3 123830593 123830820 -103693758 - L1ME3 LINE L1 -79 6091 5844 494 189 23 69 chr3 123830935 123830996 -103693582 - L1MEc LINE L1 -3139 2941 2879 2302 114 0 0 chr3 123830996 123831294 -103693284 + AluSx SINE Alu 1 298 -14 2258 66 0 0 chr3 123831293 123831564 -103693014 + AluY SINE Alu 33 303 -8 * 494 189 23 69 chr3 123831294 123831677 -103692901 - L1MEc LINE L1 -3201 2879 2775 355 218 102 48 chr3 123831731 123831878 -103692700 - L1MEc LINE L1 -4076 2185 2031 29460 104 9 25 chr3 123831914 123837726 -103686852 + L1PA7 LINE L1 2 5788 -681 2414 85 0 13 chr3 123837726 123838033 -103686545 + AluY SINE Alu 1 303 -8 29460 104 9 25 chr3 123838033 123838694 -103685884 + L1PA7 LINE L1 5788 6458 -11 318 242 24 55 chr3 123838755 123838920 -103685658 - L1MEc LINE L1 -4322 1939 1780 654 253 112 4 chr3 123838975 123839216 -103685362 - L1MEc LINE L1 -4573 1688 1422 1860 213 128 57 chr3 123839273 123840044 -103684534 + LTR1B LTR ERV1 1 826 0 583 322 85 32 chr3 123840125 123840719 -103683859 - L1MEc LINE L1 -4902 1178 589 1480 224 27 9 chr3 123840799 123841129 -103683449 - MER58B DNA MER1_type 0 341 6 477 336 74 62 chr3 123841194 123841709 -103682869 - L1MEc LINE L1 -5549 521 1 236 215 122 19 chr3 123842172 123842279 -103682299 - L1M4 LINE L1 -1415 4731 4614 3955 188 66 5 chr3 123842285 123842914 -103681664 + L1MB3 LINE L1 5112 5821 -362 189 107 0 0 chr3 123842914 123842942 -103681636 + (TA)n Simple_repeat Simple_repeat 1 28 0 3955 188 66 5 chr3 123842942 123843320 -103681258 + L1MB3 LINE L1 5821 6175 -8 385 353 33 5 chr3 123844189 123844373 -103680205 - MER5A DNA MER1_type 0 189 1 22 0 0 0 chr3 123845057 123845079 -103679499 + AT_rich Low_complexity Low_complexity 1 22 0 231 138 0 52 chr3 123845183 123845241 -103679337 + FAM SINE Alu 125 179 0 1051 182 23 32 chr3 123846160 123846380 -103678198 - MER20 DNA MER1_type 0 219 2 21 36 0 0 chr3 123846798 123846826 -103677752 + AT_rich Low_complexity Low_complexity 1 28 0 391 309 0 0 chr3 123846960 123847057 -103677521 + MER5A DNA MER1_type 9 105 -84 252 245 40 60 chr3 123847177 123847328 -103677250 + MER103 DNA DNA 13 160 -6 1689 148 16 64 chr3 123847330 123847641 -103676937 - AluJb SINE Alu -16 296 1 797 239 64 17 chr3 123848265 123848562 -103676016 - L1ME4a LINE L1 -214 5907 5597 36174 85 6 14 chr3 123849074 123855271 -103669307 + L1PA6 LINE L1 11 6151 -3 1487 186 0 53 chr3 123856472 123856773 -103667805 - AluJo SINE Alu -27 285 1 210 274 113 40 chr3 123857307 123857431 -103667147 + L2 LINE L2 3162 3294 -19 1089 307 75 34 chr3 123857432 123857843 -103666735 + L2 LINE L2 2884 3311 -2 692 73 0 21 chr3 123858762 123858858 -103665720 + L1PA10 LINE L1 6066 6159 -9 2496 68 3 0 chr3 123858889 123859196 -103665382 - AluY SINE Alu -2 309 2 35 41 0 0 chr3 123859989 123860038 -103664540 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr3 123861098 123861120 -103663458 + AT_rich Low_complexity Low_complexity 1 22 0 409 248 0 37 chr3 123861151 123861260 -103663318 + MER69 DNA AcHobo 199 303 -923 * 469 264 26 26 chr3 123861255 123861410 -103663168 + MER69 DNA AcHobo 433 587 -1939 1979 247 2 9 chr3 123861411 123861840 -103662738 - MLT2B3 LTR ERVL -128 426 1 529 249 61 24 chr3 123862019 123862184 -103662394 + L2 LINE L2 3143 3313 0 182 339 0 18 chr3 123862521 123862577 -103662001 - L2 LINE L2 -19 3253 3199 330 290 47 9 chr3 123862654 123862761 -103661817 + MLT2F LTR ERVL 1 111 -552 513 236 46 52 chr3 123862790 123862964 -103661614 + MLT1E3 LTR MaLR 50 222 -402 353 235 143 92 chr3 123862806 123863206 -103661372 + MLT2C2 LTR ERVL 45 464 0 * 245 292 48 71 chr3 123864031 123864199 -103660379 - HAL1 LINE L1 -2319 188 25 372 197 0 26 chr3 123864661 123864737 -103659841 + MLT2E LTR ERVL 32 105 -523 1931 144 55 0 chr3 123865489 123865781 -103658797 + AluJo SINE Alu 1 308 -4 1770 165 18 24 chr3 123865920 123866260 -103658318 - MER44D DNA MER2_type 0 609 2 191 294 0 0 chr3 123866695 123866746 -103657832 - L2 LINE L2 -2 3311 3261 1838 181 0 6 chr3 123867405 123867719 -103656859 + AluJb SINE Alu 1 312 0 1326 239 27 22 chr3 123868399 123868730 -103655848 - L1ME3 LINE L1 -28 6134 5799 1820 129 91 20 chr3 123868730 123869071 -103655507 - MER47A DNA MER2_type -1 365 1 1326 239 27 22 chr3 123869071 123869144 -103655434 - L1ME3 LINE L1 -363 5799 5728 953 132 48 112 chr3 123869151 123869402 -103655176 + THE1B LTR MaLR 1 235 -129 4137 127 65 32 chr3 123869405 123870164 -103654414 + LTR25 LTR ERV1 1 784 -10 804 144 8 0 chr3 123870164 123870296 -103654282 + THE1B LTR MaLR 243 375 0 280 98 0 0 chr3 123870309 123870350 -103654228 - L1ME3 LINE L1 -450 5712 5672 406 205 8 68 chr3 123870614 123870731 -103653847 + MLT1K LTR MaLR 409 518 -70 2124 101 3 7 chr3 123871518 123871871 -103652707 + AluSp SINE Alu 1 352 0 288 272 97 35 chr3 123871969 123872083 -103652495 - LTR33A LTR ERVL -331 192 72 34 0 0 0 chr3 123872794 123872828 -103651750 + AT_rich Low_complexity Low_complexity 1 34 0 11089 182 23 64 chr3 123873051 123873597 -103650981 - L1PA16 LINE L1 -1 6868 6301 2786 13 0 0 chr3 123873597 123873904 -103650674 - AluYa5 SINE Alu -4 307 1 11089 182 23 64 chr3 123873904 123874197 -103650381 - L1PA16 LINE L1 -568 6301 5998 2425 97 3 0 chr3 123874197 123874508 -103650070 - AluSp SINE Alu -1 312 1 11089 182 23 64 chr3 123874508 123877356 -103647222 - L1PA16 LINE L1 -871 5998 3035 870 154 0 13 chr3 123877356 123877505 -103647073 + LTR14B LTR ERVK 15 161 -447 11089 182 23 64 chr3 123877505 123877544 -103647034 - L1PA16 LINE L1 -3834 3035 2996 533 143 0 31 chr3 123877544 123877642 -103646936 + LTR14B LTR ERVK 512 606 -2 11089 182 23 64 chr3 123877642 123880534 -103644044 - L1PA16 LINE L1 -3873 2996 1 422 244 156 6 chr3 123880554 123880714 -103643864 - L1M4 LINE L1 -2299 3847 3664 445 327 66 22 chr3 123881203 123881566 -103643012 - L1 LINE L1 -1523 4623 4228 1401 147 37 5 chr3 123881617 123881835 -103642743 - L1PA15-16 LINE L1 -6624 225 1 8039 121 8 2 chr3 123882234 123883420 -103641158 - HSMAR2 DNA Mariner -63 1239 46 1315 229 150 38 chr3 123883422 123883841 -103640737 - MLT2B1 LTR ERVL -50 470 5 22 80 0 0 chr3 123884464 123884514 -103640064 + AT_rich Low_complexity Low_complexity 1 50 0 269 235 34 17 chr3 123887974 123888093 -103636485 + (TA)n Simple_repeat Simple_repeat 1 121 0 826 302 24 17 chr3 123888434 123888732 -103635846 + L2 LINE L2 1718 2017 -1297 1043 223 31 97 chr3 123888741 123889101 -103635477 - MER58B DNA MER1_type -4 337 3 320 241 161 9 chr3 123889113 123889225 -103635353 + L2 LINE L2 2014 2142 -1172 1063 101 0 0 chr3 123889225 123889374 -103635204 - L1PA2 LINE L1 -1 6154 6006 1106 320 63 42 chr3 123889385 123889464 -103635114 + L2 LINE L2 2305 2381 -932 2025 123 155 11 chr3 123889464 123889838 -103634740 - MSTA LTR MaLR 0 428 1 1106 320 63 42 chr3 123889838 123890283 -103634295 + L2 LINE L2 2381 2815 -498 213 39 0 0 chr3 123890283 123890309 -103634269 + (TTTTC)n Simple_repeat Simple_repeat 2 27 0 2580 96 22 0 chr3 123890314 123890679 -103633899 - L1PA10 LINE L1 -5 6163 5791 1106 320 63 42 chr3 123890679 123891015 -103633563 + L2 LINE L2 2818 3264 -49 21 0 0 0 chr3 123891262 123891283 -103633295 + AT_rich Low_complexity Low_complexity 1 21 0 324 0 0 0 chr3 123891312 123891348 -103633230 + (CA)n Simple_repeat Simple_repeat 1 36 0 727 234 15 0 chr3 123892269 123892406 -103632172 + LTR40b LTR ERVL 237 375 -87 35 0 0 0 chr3 123892788 123892823 -103631755 + AT_rich Low_complexity Low_complexity 1 35 0 6015 131 40 7 chr3 123892823 123893191 -103631387 - L1PB1 LINE L1 -2 6149 5795 495 0 0 0 chr3 123893191 123893246 -103631332 + (TAGA)n Simple_repeat Simple_repeat 4 58 0 6015 131 40 7 chr3 123893246 123894143 -103630435 - L1PB1 LINE L1 -356 5795 4833 264 307 30 10 chr3 123894207 123894308 -103630270 + L2 LINE L2 2902 3004 -268 7413 47 7 0 chr3 123894989 123896670 -103627908 + L1PA4 LINE L1 4469 6155 0 311 246 164 0 chr3 123896917 123897027 -103627551 - MIR SINE MIR -54 208 81 438 325 44 15 chr3 123898692 123898898 -103625680 + MIR SINE MIR 51 262 0 252 237 62 72 chr3 123899827 123899924 -103624654 + LTR16C LTR ERVL 79 174 -317 1315 103 39 0 chr3 123899963 123900167 -103624411 - L1PA13 LINE L1 0 6163 5952 884 223 41 16 chr3 123900197 123900439 -103624139 + LTR16A1 LTR ERVL 209 456 -1 606 205 205 6 chr3 123900495 123900533 -103624045 - MLT2D LTR ERVL -2 412 383 354 23 0 0 chr3 123900533 123900576 -103624002 + (TG)n Simple_repeat Simple_repeat 1 43 0 324 0 0 0 chr3 123900575 123900611 -103623967 + (GA)n Simple_repeat Simple_repeat 1 36 0 * 606 205 205 6 chr3 123900576 123900728 -103623850 - MLT2D LTR ERVL -31 383 226 448 290 25 27 chr3 123900735 123900996 -103623582 - L1ME LINE L1 -413 5708 5446 2337 99 50 14 chr3 123901384 123901746 -103622832 + THE1C LTR MaLR 1 375 0 389 297 25 8 chr3 123902154 123902272 -103622306 - L2 LINE L2 -12 3301 3182 317 326 103 23 chr3 123903485 123903660 -103620918 + MIR SINE MIR 2 190 -72 1651 166 10 7 chr3 123904860 123905155 -103619423 + L1PA16 LINE L1 5867 6162 -4 487 173 0 0 chr3 123905360 123905435 -103619143 + MER2 DNA MER2_type 271 345 0 206 79 53 0 chr3 123905761 123905799 -103618779 + GA-rich Low_complexity Low_complexity 2 41 0 661 363 18 12 chr3 123906206 123906537 -103618041 - LTR16B LTR ERVL -80 384 52 811 196 92 0 chr3 123907819 123907982 -103616596 + MER45A DNA AcHobo 1 178 0 303 338 42 52 chr3 123908005 123908218 -103616360 - MIR SINE MIR -50 212 2 227 296 78 70 chr3 123909188 123909330 -103615248 + MIR SINE MIR 20 162 -100 29 0 0 0 chr3 123909637 123909666 -103614912 + AT_rich Low_complexity Low_complexity 1 29 0 250 371 11 0 chr3 123910470 123910559 -103614019 + MIR SINE MIR 30 119 -89 391 317 78 18 chr3 123910836 123911003 -103613575 - MIR3 SINE MIR -31 177 1 1547 57 0 0 chr3 123913501 123913695 -103610883 - L1PA3 LINE L1 -3 6152 5959 5288 164 43 9 chr3 123913939 123915229 -103609349 - L1MA9 LINE L1 0 6312 5067 1857 138 46 35 chr3 123915229 123915600 -103608978 + THE1C LTR MaLR 1 375 0 10370 113 29 10 chr3 123915600 123917150 -103607428 + THE1C-int LTR MaLR 1 1580 0 1827 154 35 27 chr3 123917152 123917522 -103607056 + THE1C LTR MaLR 3 375 0 5288 164 43 9 chr3 123917522 123918007 -103606571 - L1MA9 LINE L1 -1245 5067 4479 248 303 73 28 chr3 123918633 123918742 -103605836 - MIR SINE MIR -79 183 70 289 260 55 55 chr3 123920121 123920248 -103604330 + MIR SINE MIR 117 243 -19 2174 221 93 16 chr3 123922176 123922685 -103601893 + L1MA10 LINE L1 5681 6242 -92 2349 128 19 8 chr3 123922685 123923045 -103601533 + THE1B LTR MaLR 1 364 0 2174 221 93 16 chr3 123923045 123923115 -103601463 + L1MA10 LINE L1 6242 6305 -29 265 304 204 18 chr3 123923115 123923335 -103601243 + L2 LINE L2 3039 3299 -14 243 0 0 0 chr3 123923536 123923563 -103601015 + (TC)n Simple_repeat Simple_repeat 2 28 0 228 35 0 0 chr3 123923562 123923591 -103600987 + (TG)n Simple_repeat Simple_repeat 2 30 0 * 2202 113 0 10 chr3 123923871 123924181 -103600397 + AluSg SINE Alu 1 307 -3 2037 128 0 3 chr3 123925349 123925639 -103598939 + AluSg SINE Alu 1 289 -21 236 75 0 25 chr3 123925639 123925679 -103598899 + (TA)n Simple_repeat Simple_repeat 2 40 0 215 31 31 0 chr3 123926256 123926288 -103598290 + (CA)n Simple_repeat Simple_repeat 2 34 0 477 0 0 0 chr3 123926290 123926343 -103598235 + (TAGA)n Simple_repeat Simple_repeat 1 53 0 7168 55 0 3 chr3 123926503 123927949 -103596629 + L1PA6 LINE L1 4710 6152 -2 549 0 0 0 chr3 123929181 123929242 -103595336 + (TA)n Simple_repeat Simple_repeat 2 62 0 26 50 0 0 chr3 123930103 123930143 -103594435 + AT_rich Low_complexity Low_complexity 1 40 0 207 0 0 0 chr3 123930567 123930590 -103593988 + (CA)n Simple_repeat Simple_repeat 2 24 0 1014 304 37 3 chr3 123930779 123931078 -103593500 - MLT1J LTR MaLR -200 311 3 300 230 0 0 chr3 123931672 123931746 -103592832 + L1PB4 LINE L1 4434 4507 -1639 * 5313 170 19 2 chr3 123931739 123932949 -103591629 + L1PB4 LINE L1 4924 6155 -1 2289 124 16 38 chr3 123933341 123933713 -103590865 + THE1B LTR MaLR 1 364 0 286 336 114 8 chr3 123934173 123934304 -103590274 - MIR3 SINE MIR -44 164 20 866 257 21 29 chr3 123934422 123934663 -103589915 + MIR SINE MIR 2 240 -22 2020 127 24 32 chr3 123934667 123935044 -103589534 + THE1C LTR MaLR 1 374 -1 236 54 54 0 chr3 123935260 123935297 -103589281 + CT-rich Low_complexity Low_complexity 3 41 0 3815 142 50 28 chr3 123935300 123936041 -103588537 - L1MA8 LINE L1 0 6291 5535 607 337 131 43 chr3 123937220 123937786 -103586792 - L2 LINE L2 0 3313 2647 786 237 14 37 chr3 123937786 123938001 -103586577 + MER63A DNA MER1_type 1 210 0 607 337 131 43 chr3 123938001 123938222 -103586356 - L2 LINE L2 -666 2647 2447 25 0 0 0 chr3 123938298 123938323 -103586255 + AT_rich Low_complexity Low_complexity 1 25 0 1965 164 38 0 chr3 123938486 123938853 -103585725 - L1MA8 LINE L1 -5 6286 5906 2006 97 0 4 chr3 123939094 123939351 -103585227 + AluSc SINE Alu 1 256 -53 416 63 32 0 chr3 123939778 123939841 -103584737 + (TTCA)n Simple_repeat Simple_repeat 1 65 0 1842 130 4 4 chr3 123941712 123941989 -103582589 + AluSg SINE Alu 29 305 -5 248 303 73 28 chr3 123942779 123942888 -103581690 + MIR SINE MIR 70 183 -79 5312 164 43 9 chr3 123943514 123943999 -103580579 + L1MA9 LINE L1 4479 4946 -1366 1827 154 35 27 chr3 123943999 123944369 -103580209 - THE1C LTR MaLR 0 375 3 10379 111 30 10 chr3 123944371 123945920 -103578658 - THE1C-int LTR MaLR 0 1580 1 1819 138 49 35 chr3 123945920 123946290 -103578288 - THE1C LTR MaLR 0 375 1 5312 164 43 9 chr3 123946290 123947580 -103576998 + L1MA9 LINE L1 4945 6312 0 1547 57 0 0 chr3 123947819 123948013 -103576565 + L1PA3 LINE L1 5959 6152 -3 391 317 78 18 chr3 123950511 123950678 -103573900 + MIR3 SINE MIR 1 177 -31 250 371 11 0 chr3 123950955 123951044 -103573534 - MIR SINE MIR -89 119 30 29 0 0 0 chr3 123951848 123951877 -103572701 + AT_rich Low_complexity Low_complexity 1 29 0 230 303 63 56 chr3 123952184 123952326 -103572252 - MIR SINE MIR -100 162 20 303 338 42 52 chr3 123953297 123953510 -103571068 + MIR SINE MIR 2 212 -50 811 196 92 0 chr3 123953533 123953696 -103570882 - MER45A DNA AcHobo 0 178 1 661 363 18 12 chr3 123954978 123955309 -103569269 + LTR16B LTR ERVL 52 384 -80 206 79 53 0 chr3 123955716 123955754 -103568824 + CT-rich Low_complexity Low_complexity 2 41 0 487 173 0 0 chr3 123956080 123956155 -103568423 - MER2 DNA MER2_type 0 345 271 1651 166 10 7 chr3 123956360 123956655 -103567923 - L1PA16 LINE L1 -4 6162 5867 317 326 103 23 chr3 123957855 123958030 -103566548 - MIR SINE MIR -72 190 2 411 331 16 8 chr3 123959238 123959362 -103565216 + L2 LINE L2 3136 3260 -12 2316 102 50 14 chr3 123959770 123960132 -103564446 - THE1C LTR MaLR 0 375 1 448 290 25 27 chr3 123960520 123960781 -103563797 + L1ME LINE L1 5446 5708 -413 623 199 205 6 chr3 123960788 123960905 -103563673 + MLT2D LTR ERVL 226 318 -96 252 0 0 0 chr3 123960905 123960933 -103563645 + (TC)n Simple_repeat Simple_repeat 1 28 0 * 372 22 0 0 chr3 123960932 123960977 -103563601 + (CA)n Simple_repeat Simple_repeat 1 45 0 623 199 205 6 chr3 123960933 123961015 -103563563 + MLT2D LTR ERVL 318 412 -2 884 223 41 16 chr3 123961071 123961313 -103563265 - LTR16A1 LTR ERVL -1 456 209 1315 103 39 0 chr3 123961343 123961547 -103563031 + L1PA13 LINE L1 5952 6163 0 252 237 62 72 chr3 123961586 123961683 -103562895 - LTR16C LTR ERVL -317 174 79 438 325 44 15 chr3 123962612 123962818 -103561760 - MIR SINE MIR 0 262 51 311 246 164 0 chr3 123964483 123964593 -103559985 + MIR SINE MIR 81 208 -54 7146 14 0 0 chr3 123964836 123965648 -103558930 - L1PA3 LINE L1 0 6155 5344 416 329 75 28 chr3 123966005 123966453 -103558125 - HAL1 LINE L1 -9 2498 2008 2537 4 0 0 chr3 123966453 123966726 -103557852 - AluYa5 SINE Alu -3 308 36 416 329 75 28 chr3 123966726 123966927 -103557651 - HAL1 LINE L1 -499 2008 1818 290 206 14 0 chr3 123966971 123967044 -103557534 + CT-rich Low_complexity Low_complexity 3 76 0 907 136 12 19 chr3 123967077 123967239 -103557339 - L1PB2 LINE L1 -2 6149 5989 748 239 0 34 chr3 123967258 123967434 -103557144 - HAL1 LINE L1 -750 1757 1588 560 15 0 0 chr3 123967435 123967501 -103557077 + L1PA3 LINE L1 4 69 -6077 37304 33 28 1 chr3 123967501 123972892 -103551686 + L1PA3 LINE L1 620 6153 -2 24 0 0 0 chr3 123972893 123972917 -103551661 + AT_rich Low_complexity Low_complexity 1 24 0 386 312 152 50 chr3 123972968 123973369 -103551209 + LTR67 LTR ERVL 23 464 -93 751 265 85 51 chr3 123973430 123973548 -103551030 - HAL1 LINE L1 -913 1594 1481 2592 79 11 3 chr3 123973548 123973904 -103550674 - L1PA8 LINE L1 -8 6164 5806 751 265 85 51 chr3 123973904 123973929 -103550649 - HAL1 LINE L1 -1026 1481 1458 180 97 0 0 chr3 123973929 123973960 -103550618 + (TCTG)n Simple_repeat Simple_repeat 4 34 0 751 265 85 51 chr3 123973960 123974297 -103550281 - HAL1 LINE L1 -1049 1458 1091 2171 94 35 0 chr3 123974297 123974584 -103549994 + AluSx SINE Alu 1 297 -15 751 265 85 51 chr3 123974584 123974630 -103549948 - HAL1 LINE L1 -1416 1091 1048 2117 164 26 3 chr3 123974650 123975027 -103549551 - L1MC1 LINE L1 -5 6328 5943 351 319 41 74 chr3 123975044 123975314 -103549264 - HAL1 LINE L1 -2226 281 21 394 325 52 19 chr3 123975412 123975566 -103549012 - MIR SINE MIR -81 181 23 435 105 70 23 chr3 123975808 123975894 -103548684 + MLT1D LTR MaLR 416 505 0 210 91 0 0 chr3 123975928 123975961 -103548617 + (TC)n Simple_repeat Simple_repeat 1 33 0 345 47 0 0 chr3 123975961 123976004 -103548574 + (TG)n Simple_repeat Simple_repeat 2 44 0 1311 194 92 84 chr3 123976519 123976562 -103548016 + MSTD LTR MaLR 2 43 -353 1846 169 0 13 chr3 123976562 123976875 -103547703 + AluJo SINE Alu 1 309 -3 1311 194 92 84 chr3 123976875 123977223 -103547355 + MSTD LTR MaLR 43 396 0 545 376 27 0 chr3 123977247 123977505 -103547073 - LTR16C LTR ERVL -156 335 71 7701 164 16 23 chr3 123977530 123980107 -103544471 + L1PB1 LINE L1 3591 6151 0 370 285 124 15 chr3 123981116 123981253 -103543325 + MIR SINE MIR 50 201 -61 276 350 49 8 chr3 123981357 123981480 -103543098 - L2 LINE L2 -9 3263 3136 24 0 0 0 chr3 123981986 123982010 -103542568 + AT_rich Low_complexity Low_complexity 1 24 0 2941 78 76 0 chr3 123982123 123982544 -103542034 - MLT2A2 LTR ERVL 0 453 1 39640 80 12 2 chr3 123982544 123988149 -103536429 - HERVL-A2 LTR ERVL 0 5654 1 1731 95 47 10 chr3 123988151 123988191 -103536387 - MLT2A2 LTR ERVL -2 451 414 300 27 0 0 chr3 123988191 123988228 -103536350 + (TG)n Simple_repeat Simple_repeat 2 38 0 1731 95 47 10 chr3 123988228 123988558 -103536020 - MLT2A2 LTR ERVL -39 414 1 519 290 167 25 chr3 123988559 123988924 -103535654 + HAL1 LINE L1 48 464 -2043 2294 170 65 0 chr3 123989548 123989948 -103534630 - MSTB LTR MaLR 0 426 1 326 240 186 8 chr3 123990842 123990974 -103533604 - MIR3 SINE MIR 0 208 47 854 216 34 55 chr3 123993238 123993530 -103531048 - MER83C LTR ERV1 -39 334 49 309 323 70 32 chr3 123993845 123994003 -103530575 - MIR SINE MIR -79 183 20 1569 173 66 21 chr3 123994566 123994855 -103529723 + AluJo SINE Alu 1 302 -10 1662 201 3 0 chr3 123994859 123995152 -103529426 + AluSx SINE Alu 1 294 -18 390 280 63 14 chr3 123995605 123995812 -103528766 + HAL1 LINE L1 1468 1684 -823 384 325 74 40 chr3 123996213 123996564 -103528014 + L1 LINE L1 2480 2842 -3304 259 305 116 0 chr3 123996758 123996948 -103527630 - L1MC/D LINE L1 -2038 5770 5559 350 261 92 41 chr3 123997021 123997151 -103527427 - L1MC/D LINE L1 -1527 4619 4474 888 118 0 0 chr3 123997151 123997287 -103527291 + L1PA13 LINE L1 6021 6156 -7 350 261 92 41 chr3 123997287 123997351 -103527227 - L1MC/D LINE L1 -1672 4474 4415 240 143 0 0 chr3 123997533 123997575 -103527003 + (TC)n Simple_repeat Simple_repeat 2 43 0 332 276 0 0 chr3 123997579 123997655 -103526923 + L1MC4 LINE L1 6648 6723 -1319 1540 116 0 5 chr3 123997704 123997944 -103526634 + AluSc SINE Alu 82 309 0 1340 223 140 16 chr3 123998331 123998775 -103525803 - MLT1D LTR MaLR 0 505 7 660 290 68 38 chr3 123999001 123999398 -103525180 + LTR33A LTR ERVL 91 499 -24 1942 161 22 57 chr3 123999821 124000225 -103524353 + MLT1B LTR MaLR 1 390 0 371 303 75 79 chr3 124002141 124002382 -103522196 - MIR SINE MIR -3 259 20 28516 103 12 13 chr3 124002819 124008516 -103516062 + L1PA7 LINE L1 758 6465 -4 210 138 69 86 chr3 124008987 124009045 -103515533 - MER91C DNA MER1_type -64 76 20 294 132 0 0 chr3 124009342 124009395 -103515183 + (TG)n Simple_repeat Simple_repeat 2 54 0 230 283 11 11 chr3 124010464 124010556 -103514022 + MLT1K LTR MaLR 141 232 -356 544 159 5 154 chr3 124010562 124010782 -103513796 - MER53 DNA DNA 0 189 3 2292 47 17 17 chr3 124011343 124011641 -103512937 + AluY SINE Alu 1 298 -13 301 265 10 49 chr3 124013217 124013319 -103511259 - MIR SINE MIR -125 137 40 564 306 95 45 chr3 124014584 124015006 -103509572 + LTR67 LTR ERVL 112 554 -3 2087 103 14 14 chr3 124015180 124015471 -103509107 + AluSg SINE Alu 1 291 -19 1678 171 50 26 chr3 124016266 124016647 -103507931 - MLT1B LTR MaLR 0 390 1 295 307 61 18 chr3 124016745 124016859 -103507719 - MIR SINE MIR -30 232 114 3184 95 11 9 chr3 124017052 124017299 -103507279 - MLT2A2 LTR ERVL 0 453 203 387 0 0 0 chr3 124017299 124017342 -103507236 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 3184 95 11 9 chr3 124017342 124017546 -103507032 - MLT2A2 LTR ERVL -250 203 1 2246 112 0 0 chr3 124017614 124017909 -103506669 - AluSg SINE Alu -15 295 1 24 0 0 0 chr3 124018009 124018033 -103506545 + AT_rich Low_complexity Low_complexity 1 24 0 305 213 0 0 chr3 124018641 124018702 -103505876 + Tigger2 DNA MER2_type 1 61 -2657 842 194 0 59 chr3 124018750 124018936 -103505642 - MER8 DNA MER2_type -62 177 3 23 33 0 0 chr3 124018936 124018966 -103505612 + AT_rich Low_complexity Low_complexity 1 30 0 520 313 42 12 chr3 124018994 124019160 -103505418 + MER5B DNA MER1_type 8 178 0 365 312 82 18 chr3 124019195 124019365 -103505213 - MLT1J LTR MaLR -21 490 310 209 306 0 0 chr3 124019392 124019454 -103505124 - L2 LINE L2 -1 3312 3251 2111 272 33 20 chr3 124019457 124020207 -103504371 - L2 LINE L2 -239 3074 2317 393 193 168 37 chr3 124020213 124020374 -103504204 + LTR41 LTR ERVL 1 182 -591 255 197 13 53 chr3 124020800 124020876 -103503702 + LTR41 LTR ERVL 695 767 -6 2053 305 97 23 chr3 124020887 124021807 -103502771 - L2 LINE L2 -999 2315 1328 6976 200 102 48 chr3 124021932 124022567 -103502011 + L1M4c LINE L1 29 628 -5756 198 0 0 0 chr3 124022567 124022589 -103501989 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 6976 200 102 48 chr3 124022589 124022818 -103501760 + L1M4c LINE L1 628 843 -5541 2536 56 0 0 chr3 124022818 124023121 -103501457 + AluY SINE Alu 1 303 -8 6976 200 102 48 chr3 124023121 124024312 -103500266 + L1M4c LINE L1 843 2196 -4188 948 217 4 4 chr3 124024314 124024540 -103500038 + L1MB3 LINE L1 5957 6182 -1 811 181 0 0 chr3 124024543 124024676 -103499902 + FLAM_C SINE Alu 1 133 0 211 139 0 23 chr3 124024718 124024761 -103499817 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 227 385 78 51 chr3 124024762 124025019 -103499559 - L2 LINE L2 -2086 1228 965 322 284 80 19 chr3 124025073 124025235 -103499343 - MLT1J LTR MaLR -339 172 1 842 211 11 0 chr3 124028035 124028210 -103496368 - MER5B DNA MER1_type 0 178 2 552 192 42 0 chr3 124029570 124029690 -103494888 - MER4C LTR ERV1 -30 435 311 224 210 0 16 chr3 124029703 124029765 -103494813 + (TA)n Simple_repeat Simple_repeat 2 62 0 238 235 0 12 chr3 124029789 124029870 -103494708 + L1MC4 LINE L1 6624 6703 -1339 1115 184 0 0 chr3 124029873 124030052 -103494526 - AluJb SINE Alu -5 307 129 3813 63 2 10 chr3 124030064 124030570 -103494008 - L1PA7 LINE L1 -2 6152 5651 2663 41 9 0 chr3 124030571 124030916 -103493662 + L1PA7 LINE L1 5276 5623 -531 25 31 0 0 chr3 124030924 124030956 -103493622 + AT_rich Low_complexity Low_complexity 1 32 0 206 273 15 30 chr3 124031477 124031543 -103493035 - MIR SINE MIR -61 147 88 241 224 35 59 chr3 124031651 124031736 -103492842 + MLT1J2 LTR MaLR 2 84 -366 1410 252 9 9 chr3 124031752 124032101 -103492477 + MLT1A1 LTR MaLR 6 354 -11 393 306 111 37 chr3 124032111 124032408 -103492170 + MLT1J2 LTR MaLR 108 426 -24 226 270 22 56 chr3 124032687 124032776 -103491802 + MIR SINE MIR 113 198 -64 307 346 7 0 chr3 124034435 124034571 -103490007 - L2 LINE L2 -1605 1709 1573 2127 112 0 3 chr3 124034678 124034973 -103489605 - AluY SINE Alu -14 297 4 280 350 57 7 chr3 124035164 124035226 -103489352 + L2 LINE L2 3167 3224 -89 1136 145 28 5 chr3 124035226 124035440 -103489138 - L1MB3 LINE L1 -4 6179 5961 280 350 57 7 chr3 124035440 124035517 -103489061 + L2 LINE L2 3224 3313 0 325 356 0 17 chr3 124036757 124036872 -103487706 + MIR3 SINE MIR 60 172 -36 22 20 6 0 chr3 124037500 124037559 -103487019 + AT_rich Low_complexity Low_complexity 1 29 0 2093 80 0 71 chr3 124037807 124038118 -103486460 + AluY SINE Alu 1 289 -22 316 200 0 0 chr3 124038307 124038357 -103486221 + T-rich Low_complexity Low_complexity 1 50 0 210 114 57 23 chr3 124038379 124038467 -103486111 + (GTGTG)n Simple_repeat Simple_repeat 2 92 0 188 125 56 14 chr3 124038481 124038553 -103486025 + (TTGTG)n Simple_repeat Simple_repeat 4 78 0 181 148 0 0 chr3 124040503 124040530 -103484048 - MIR SINE MIR -155 107 81 265 174 29 0 chr3 124041665 124041734 -103482844 + Charlie7 DNA MER1_type 78 148 -2464 683 231 160 14 chr3 124041752 124042034 -103482544 + Charlie7 DNA MER1_type 395 717 -1895 672 83 0 10 chr3 124042616 124042712 -103481866 - MER47A DNA MER2_type -194 172 78 409 88 18 0 chr3 124042737 124042794 -103481784 + Alu SINE Alu 230 287 -22 267 240 34 99 chr3 124042795 124042896 -103481682 - L1MC/D LINE L1 -589 5575 5491 2451 58 0 0 chr3 124042926 124043235 -103481343 - AluY SINE Alu -2 309 1 793 176 139 27 chr3 124043547 124043734 -103480844 - MER20 DNA MER1_type -7 212 5 217 281 24 61 chr3 124045037 124045119 -103479459 + L2 LINE L2 3177 3255 -58 214 351 15 61 chr3 124045220 124045351 -103479227 - L2 LINE L2 -5 3267 3143 1944 82 0 0 chr3 124046048 124046341 -103478237 - AluSg SINE Alu 0 331 39 388 291 37 30 chr3 124047243 124047377 -103477201 - MIR SINE MIR -123 139 5 342 256 0 12 chr3 124047816 124047898 -103476680 + LTR67 LTR ERVL 475 555 -2 2506 173 7 2 chr3 124048262 124048678 -103475900 + MER47B DNA MER2_type 1 418 0 1817 166 3 3 chr3 124049409 124049717 -103474861 - AluJb SINE Alu -4 308 1 351 286 22 90 chr3 124049787 124049965 -103474613 + MIR SINE MIR 1 166 -96 325 322 78 9 chr3 124049971 124050086 -103474492 - L2 LINE L2 -3 3310 3188 243 229 86 29 chr3 124050094 124050199 -103474379 - MIR SINE MIR -5 257 147 265 174 29 0 chr3 124051487 124051556 -103473022 + Charlie7 DNA MER1_type 78 148 -2464 683 231 160 14 chr3 124051574 124051856 -103472722 + Charlie7 DNA MER1_type 395 717 -1895 274 261 82 30 chr3 124052122 124052256 -103472322 + Charlie8 DNA MER1_type 65 205 -2212 2245 166 18 52 chr3 124052399 124052840 -103471738 + MSTB1 LTR MaLR 7 432 0 2020 136 35 23 chr3 124052890 124053235 -103471343 - MER46B DNA MER2_type -8 228 5 282 56 0 0 chr3 124054108 124054144 -103470434 + (TG)n Simple_repeat Simple_repeat 2 37 0 1762 126 36 0 chr3 124055773 124056051 -103468527 + L1PB4 LINE L1 5869 6156 0 683 194 26 43 chr3 124056060 124056365 -103468213 + MER93b LTR ERV1 29 367 -6 1656 143 36 78 chr3 124056380 124056688 -103467890 + AluSx SINE Alu 1 295 -17 574 266 104 0 chr3 124057142 124057315 -103467263 + MIR SINE MIR 4 194 -68 213 343 0 0 chr3 124057318 124057385 -103467193 + (CTA)n Simple_repeat Simple_repeat 2 68 0 227 242 106 0 chr3 124057709 124057775 -103466803 + MIR3 SINE MIR 120 192 -16 582 336 66 4 chr3 124058450 124058721 -103465857 + MLT1I LTR MaLR 104 391 -18 225 316 0 0 chr3 124059855 124059912 -103464666 - MLT1J1 LTR MaLR -123 323 267 263 178 14 55 chr3 124060809 124060882 -103463696 - MER5B DNA MER1_type -108 70 1 * 424 303 67 8 chr3 124060882 124060995 -103463583 + L2 LINE L2 3153 3272 0 318 138 15 0 chr3 124061462 124061527 -103463051 - L1MA8 LINE L1 -6 6285 6220 1428 285 53 63 chr3 124061528 124062569 -103462009 + L1M1 LINE L1 14 983 -6506 4577 242 45 29 chr3 124062578 124064757 -103459821 + L1M1 LINE L1 1884 4102 -3463 308 257 57 0 chr3 124064757 124064827 -103459751 - Tigger7 DNA MER2_type -470 80 7 294 364 50 0 chr3 124065039 124065138 -103459440 - L2 LINE L2 -35 3237 3134 320 345 43 9 chr3 124066201 124066317 -103458261 - L2 LINE L2 -2 3270 3151 1081 226 44 91 chr3 124066533 124066918 -103457660 + MLT1A2 LTR MaLR 1 367 -7 326 387 52 0 chr3 124066932 124067105 -103457473 - MIR SINE MIR -32 230 49 1474 206 112 25 chr3 124067155 124067549 -103457029 - MSTC LTR MaLR 0 428 1 4187 251 118 73 chr3 124067552 124069206 -103455372 - MSTC-int LTR MaLR -4 1731 2 1493 181 113 38 chr3 124069208 124069606 -103454972 - MSTC LTR MaLR 0 428 1 1174 274 104 8 chr3 124070257 124070651 -103453927 + L2 LINE L2 1783 2214 -1100 3698 108 40 33 chr3 124070702 124071306 -103453272 - MER4B LTR ERV1 -2 608 1 741 277 38 11 chr3 124071349 124071533 -103453045 - MLT1F LTR MaLR -108 434 246 459 276 60 15 chr3 124071537 124071671 -103452907 - MLT1F LTR MaLR -402 140 1 383 271 47 108 chr3 124071671 124071802 -103452776 - MLT1F-int LTR MaLR 0 1371 1234 1648 206 16 30 chr3 124071802 124072170 -103452408 + MLT1A1 LTR MaLR 1 363 -2 383 271 47 108 chr3 124072170 124072399 -103452179 - MLT1F-int LTR MaLR -137 1234 1033 3622 181 22 17 chr3 124072717 124074762 -103449816 + L1PA16 LINE L1 4495 6166 0 478 295 35 79 chr3 124075170 124075403 -103449175 - MLT1F-int LTR MaLR -770 601 388 2241 118 0 0 chr3 124075403 124075709 -103448869 - AluSx SINE Alu -6 306 1 478 295 35 79 chr3 124075709 124075844 -103448734 - MLT1F-int LTR MaLR -983 388 249 813 257 62 70 chr3 124075875 124076340 -103448238 + MLT1G3 LTR MaLR 24 593 -2 9855 199 107 23 chr3 124077112 124078484 -103446094 + L1MCa LINE L1 3 1258 -5168 190 53 0 53 chr3 124078484 124078522 -103446056 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 9855 199 107 23 chr3 124078522 124079420 -103445158 + L1MCa LINE L1 1258 2079 -4347 228 35 0 0 chr3 124079420 124079449 -103445129 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 9855 199 107 23 chr3 124079449 124079492 -103445086 + L1MCa LINE L1 2079 2117 -4309 204 111 0 0 chr3 124079492 124079528 -103445050 + (TTAG)n Simple_repeat Simple_repeat 1 36 0 1583 179 48 0 chr3 124079528 124079796 -103444782 - AluJb SINE Alu -31 281 1 9855 199 107 23 chr3 124079796 124080267 -103444311 + L1MCa LINE L1 2116 3062 -3364 1204 216 15 4 chr3 124080257 124080521 -103444057 + L1MCa LINE L1 4226 4492 -1934 * 631 231 40 20 chr3 124080524 124080723 -103443855 + L1MCa LINE L1 4661 4863 -1563 577 219 41 0 chr3 124080773 124080896 -103443682 + MER58B DNA MER1_type 214 341 0 355 314 67 72 chr3 124081345 124081568 -103443010 - MIR SINE MIR -3 259 38 223 322 63 52 chr3 124083787 124083961 -103440617 - MIR SINE MIR -69 193 18 331 265 37 37 chr3 124084774 124084936 -103439642 - HAL1b LINE L1 -437 911 750 490 281 83 95 chr3 124085185 124085702 -103438876 - HAL1 LINE L1 -827 1680 1170 23 0 0 0 chr3 124086455 124086478 -103438100 + AT_rich Low_complexity Low_complexity 1 23 0 5386 154 43 2 chr3 124087101 124087965 -103436613 + L1PA16 LINE L1 9 907 -5942 2512 190 41 14 chr3 124087963 124090842 -103433736 + L1PA16 LINE L1 3857 6869 0 * 450 0 0 0 chr3 124091567 124091617 -103432961 + (TATTG)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr3 124093052 124093073 -103431505 + AT_rich Low_complexity Low_complexity 1 21 0 239 281 100 56 chr3 124093546 124093781 -103430797 - MIR3 SINE MIR -19 243 2 362 293 36 21 chr3 124094793 124094933 -103429645 - MIR SINE MIR -7 255 114 1862 139 105 15 chr3 124095009 124095341 -103429237 - THE1B LTR MaLR 0 364 3 11718 96 2 1 chr3 124095343 124096920 -103427658 - THE1B-int LTR MaLR 0 1580 1 1615 183 142 0 chr3 124096920 124097237 -103427341 - THE1B LTR MaLR 0 364 3 22 35 0 0 chr3 124098599 124098628 -103425950 + AT_rich Low_complexity Low_complexity 1 29 0 677 259 112 5 chr3 124099709 124099914 -103424664 + LTR16C LTR ERVL 257 483 -8 432 293 76 19 chr3 124100251 124100408 -103424170 - MIR SINE MIR -84 178 13 243 202 83 71 chr3 124100494 124100578 -103424000 + MIR SINE MIR 122 206 -56 674 230 35 88 chr3 124100664 124100890 -103423688 - MLT1J2 LTR MaLR -199 251 38 594 290 160 33 chr3 124100977 124101592 -103422986 + L2 LINE L2 2519 3216 -97 2089 127 3 0 chr3 124101600 124101935 -103422643 - AluSp SINE Alu 0 344 9 5843 166 48 23 chr3 124102003 124104169 -103420409 - L1MA9 LINE L1 -9 6303 4090 1831 172 7 0 chr3 124104232 124104522 -103420056 - AluSx SINE Alu -20 292 1 229 224 0 0 chr3 124104536 124104585 -103419993 + L2 LINE L2 3259 3307 -6 284 70 23 0 chr3 124104844 124104887 -103419691 + (TTTCC)n Simple_repeat Simple_repeat 4 47 0 22 56 0 0 chr3 124105106 124105142 -103419436 + AT_rich Low_complexity Low_complexity 1 36 0 7416 33 6 0 chr3 124105142 124106614 -103417964 - L1PA4 LINE L1 -11 6144 4669 186 304 58 29 chr3 124108558 124108627 -103415951 - L2 LINE L2 -8 3305 3235 233 333 100 0 chr3 124110243 124110333 -103414245 + L2 LINE L2 3160 3258 -14 759 115 0 0 chr3 124110675 124110779 -103413799 - AluSg/x SINE Alu -23 287 184 2200 113 0 0 chr3 124110959 124111261 -103413317 + AluSg1 SINE Alu 1 302 -7 285 274 0 0 chr3 124111432 124111505 -103413073 + CT-rich Low_complexity Low_complexity 2 74 0 262 247 165 47 chr3 124113013 124113098 -103411480 - L2 LINE L2 -9 3263 3169 1036 254 125 50 chr3 124113800 124114343 -103410235 + MER34C LTR ERV1 2 585 0 2673 131 30 31 chr3 124114655 124115253 -103409325 - MER4E LTR ERV1 0 766 1 418 328 79 11 chr3 124115965 124116179 -103408399 + MIR SINE MIR 11 229 -33 213 371 77 0 chr3 124116174 124116317 -103408261 - MIR SINE MIR -51 211 58 * 22 0 0 0 chr3 124116698 124116720 -103407858 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr3 124116895 124116925 -103407653 + AT_rich Low_complexity Low_complexity 1 30 0 2258 132 6 11 chr3 124117116 124117473 -103407105 - THE1A LTR MaLR 0 355 1 9685 121 2 34 chr3 124117672 124119160 -103405418 - THE1A-int LTR MaLR -139 1441 1 307 191 15 0 chr3 124119190 124119258 -103405320 - L1 LINE L1 -1584 4562 4494 465 19 0 0 chr3 124119258 124119312 -103405266 + (TA)n Simple_repeat Simple_repeat 2 55 0 10008 213 11 8 chr3 124119312 124121587 -103402991 - L1 LINE L1 -1747 4399 2118 9835 179 135 15 chr3 124121585 124123954 -103400624 - L1PBa LINE L1 -4192 2671 18 * 7237 173 54 15 chr3 124123939 124125540 -103399038 - L1PBa LINE L1 -2157 4705 2948 * 4334 25 0 4 chr3 124125540 124126052 -103398526 - L1PA3 LINE L1 -2 6153 5644 7237 173 54 15 chr3 124126052 124127212 -103397366 - L1PBa LINE L1 -3914 2948 1835 944 149 16 48 chr3 124127205 124127393 -103397185 - L1PBa LINE L1 -6048 815 634 * 539 179 9 0 chr3 124127393 124127499 -103397079 - L1PBa LINE L1 -6663 200 94 2317 84 0 7 chr3 124127714 124128010 -103396568 + AluY SINE Alu 1 294 -17 180 0 0 0 chr3 124128010 124128030 -103396548 + (TA)n Simple_repeat Simple_repeat 2 21 0 2547 73 38 0 chr3 124128517 124128859 -103395719 + THE1A LTR MaLR 1 355 0 630 187 0 8 chr3 124129342 124129465 -103395113 - L1PBa LINE L1 -6739 124 3 268 249 57 115 chr3 124129512 124129721 -103394857 - HAL1 LINE L1 -1556 951 755 266 291 103 43 chr3 124129988 124130222 -103394356 - HAL1 LINE L1 -1986 521 274 435 37 0 0 chr3 124130467 124130521 -103394057 + MADE1 DNA Mariner 1 54 -26 2275 100 0 3 chr3 124131694 124131994 -103392584 + AluSg SINE Alu 1 299 -11 363 332 175 14 chr3 124132299 124132516 -103392062 + MIR SINE MIR 2 253 -9 595 349 146 17 chr3 124133705 124134055 -103390523 - LTR16A LTR ERVL -1 449 55 951 207 19 109 chr3 124134125 124134391 -103390187 - MLT1B LTR MaLR 0 383 133 31 44 0 0 chr3 124134434 124134479 -103390099 + AT_rich Low_complexity Low_complexity 1 45 0 212 408 10 10 chr3 124135903 124136006 -103388572 + L2 LINE L2 3167 3269 -3 2183 117 10 0 chr3 124136997 124137297 -103387281 - AluSx SINE Alu -9 303 1 275 254 42 0 chr3 124137568 124137639 -103386939 + L2 LINE L2 3224 3297 -16 882 281 114 52 chr3 124138490 124139009 -103385569 + MLT1H1 LTR MaLR 3 553 -2 311 171 57 14 chr3 124139311 124139381 -103385197 - MIR SINE MIR -112 150 78 461 325 26 0 chr3 124139440 124139591 -103384987 + L2 LINE L2 3118 3272 0 222 0 79 0 chr3 124140419 124140457 -103384121 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2359 102 0 3 chr3 124140796 124141109 -103383469 + AluSx SINE Alu 1 312 0 365 186 0 12 chr3 124141109 124141184 -103383394 + GA-rich Low_complexity Low_complexity 11 86 0 646 180 7 7 chr3 124142258 124142408 -103382170 + CT-rich Low_complexity Low_complexity 3 152 0 352 93 2 0 chr3 124143197 124143251 -103381327 + MLT1A2 LTR MaLR 327 374 0 259 289 0 0 chr3 124143318 124143408 -103381170 + A-rich Low_complexity Low_complexity 1 90 0 2281 116 0 0 chr3 124146508 124146819 -103377759 - AluSq SINE Alu -2 311 1 1800 170 0 10 chr3 124146823 124147117 -103377461 - AluJb SINE Alu -21 291 1 821 227 34 41 chr3 124147120 124147411 -103377167 - L1ME2 LINE L1 -36 6128 5840 360 198 21 0 chr3 124147421 124147517 -103377061 - AluSp/q SINE Alu -1 302 205 204 287 21 43 chr3 124148160 124148254 -103376324 + MIR SINE MIR 104 195 -67 348 279 121 29 chr3 124148558 124148698 -103375880 + MIR SINE MIR 30 182 -80 2066 135 0 16 chr3 124151842 124152153 -103372425 + AluSx SINE Alu 1 306 -6 1076 116 19 0 chr3 124152156 124152311 -103372267 + AluSg/x SINE Alu 136 293 -19 428 167 0 0 chr3 124152715 124152787 -103371791 + AluS SINE Alu 1 72 -237 321 281 11 37 chr3 124153117 124153410 -103371168 + GA-rich Low_complexity Low_complexity 1 285 0 526 292 25 0 chr3 124153864 124153984 -103370594 - L2 LINE L2 0 3272 3150 616 231 32 27 chr3 124154162 124154348 -103370230 + AluJb SINE Alu 1 187 -125 187 191 118 29 chr3 124155246 124155314 -103369264 + L2 LINE L2 3198 3271 -1 2046 130 7 0 chr3 124155721 124156014 -103368564 + AluSq SINE Alu 1 295 -18 951 184 6 0 chr3 124156026 124156184 -103368394 + AluJb SINE Alu 129 287 -25 473 250 113 0 chr3 124156202 124156362 -103368216 - L2 LINE L2 -1607 1707 1530 206 282 73 36 chr3 124156496 124156606 -103367972 + MIR SINE MIR 27 140 -68 256 247 165 47 chr3 124157137 124157222 -103367356 + L2 LINE L2 3169 3263 -9 285 274 0 0 chr3 124158730 124158803 -103365775 + GA-rich Low_complexity Low_complexity 2 74 0 2195 114 0 0 chr3 124158974 124159273 -103365305 - AluSg1 SINE Alu -10 299 1 804 106 0 0 chr3 124159457 124159561 -103365017 + AluSg/x SINE Alu 184 287 -23 235 333 100 0 chr3 124159903 124159993 -103364585 - L2 LINE L2 -14 3258 3160 6791 68 12 1 chr3 124163623 124165098 -103359480 + L1PA6 LINE L1 4669 6153 -1 2431 80 11 35 chr3 124165346 124165720 -103358858 + L1MA1 LINE L1 5934 6298 -4 2045 112 14 10 chr3 124166466 124166761 -103357817 + AluSx SINE Alu 1 296 -16 303 327 24 36 chr3 124166801 124166834 -103357744 - MIR SINE MIR -18 244 212 2301 92 0 0 chr3 124166834 124167129 -103357449 + AluY SINE Alu 1 295 -16 303 327 24 36 chr3 124167129 124167263 -103357315 - MIR SINE MIR -50 212 79 250 313 12 25 chr3 124167310 124167390 -103357188 - MIR SINE MIR -179 83 5 1863 157 0 0 chr3 124168235 124168522 -103356056 + AluSx SINE Alu 1 287 -25 1110 189 0 0 chr3 124168601 124168786 -103355792 + AluJb SINE Alu 120 304 -8 201 233 0 0 chr3 124169158 124169201 -103355377 + GA-rich Low_complexity Low_complexity 2 44 0 246 336 62 18 chr3 124169633 124169746 -103354832 + MIR3 SINE MIR 15 132 -76 5536 122 11 2 chr3 124169758 124170644 -103353934 - L1PB1 LINE L1 0 6151 5258 606 13 0 13 chr3 124170835 124170912 -103353666 - L1PA2 LINE L1 -341 5814 5739 2695 16 0 0 chr3 124170912 124171215 -103353363 + L1PA2 LINE L1 5847 6155 0 841 278 87 34 chr3 124171337 124171989 -103352589 - L1ME3A LINE L1 -225 5945 5259 538 296 78 84 chr3 124171992 124172332 -103352246 - L1ME3A LINE L1 -891 5255 4916 2110 117 4 0 chr3 124172332 124172668 -103351910 + AluY SINE Alu 1 337 0 538 296 78 84 chr3 124172668 124172823 -103351755 - L1ME3A LINE L1 -1230 4916 4762 882 283 17 0 chr3 124172885 124173118 -103351460 - MIR SINE MIR -25 237 1 26 74 0 0 chr3 124173165 124173219 -103351359 + AT_rich Low_complexity Low_complexity 1 54 0 2559 50 0 0 chr3 124173254 124173557 -103351021 - AluY SINE Alu -8 303 1 527 193 27 64 chr3 124173605 124173792 -103350786 - MER46C DNA MER2_type -140 198 19 205 283 0 0 chr3 124174527 124174573 -103350005 + L2 LINE L2 3223 3268 -4 202 400 36 9 chr3 124176054 124176164 -103348414 - MIR SINE MIR -76 132 20 323 331 27 27 chr3 124176928 124177076 -103347502 + MIR3 SINE MIR 52 199 -9 272 284 90 36 chr3 124177782 124177960 -103346618 + MIR3 SINE MIR 20 205 -3 771 184 147 6 chr3 124179122 124179285 -103345293 + MER5A DNA MER1_type 3 188 -1 2053 117 23 19 chr3 124179373 124179682 -103344896 - AluSx SINE Alu -2 310 1 412 331 70 8 chr3 124180905 124181147 -103343431 + L1MEc LINE L1 31 287 -6109 317 118 71 12 chr3 124181391 124181476 -103343102 + L1ME1 LINE L1 5106 5195 -951 337 170 67 24 chr3 124181536 124181654 -103342924 + (TATAA)n Simple_repeat Simple_repeat 1 113 -117 183 42 0 0 chr3 124181654 124181678 -103342900 + (TTATA)n Simple_repeat Simple_repeat 3 26 0 337 170 67 24 chr3 124181678 124181757 -103342821 + (TATAA)n Simple_repeat Simple_repeat 113 230 0 82 43 0 0 chr3 124181761 124181878 -103342700 + AT_rich Low_complexity Low_complexity 1 117 0 2073 266 57 12 chr3 124181904 124182822 -103341756 + L1ME1 LINE L1 5190 6151 -15 502 265 54 0 chr3 124182880 124183084 -103341494 + L1MC4 LINE L1 7026 7240 -802 2912 231 23 8 chr3 124183094 124183798 -103340780 + L1M1 LINE L1 22 735 -6830 580 256 0 0 chr3 124184219 124184356 -103340222 + L1M1 LINE L1 398 534 -7031 4424 175 29 48 chr3 124184361 124185088 -103339490 + L1M1 LINE L1 745 1453 -6112 2157 122 0 0 chr3 124185088 124185384 -103339194 - AluSc SINE Alu -13 296 1 4424 175 29 48 chr3 124185384 124185576 -103339002 + L1M1 LINE L1 1453 1647 -5918 802 58 0 0 chr3 124185577 124185681 -103338897 + L1MA1 LINE L1 6195 6298 -4 748 259 224 26 chr3 124185707 124186275 -103338303 + L1MC4 LINE L1 7225 7904 -138 21 0 0 0 chr3 124186362 124186383 -103338195 + AT_rich Low_complexity Low_complexity 1 21 0 1510 87 0 0 chr3 124186426 124186621 -103337957 + HERV17 LTR ERV1 8432 8626 0 2659 58 0 0 chr3 124186622 124186947 -103337631 + LTR17 LTR ERV1 2 326 -454 342 200 15 0 chr3 124188047 124188112 -103336466 - MER5A DNA MER1_type -123 66 1 301 143 0 20 chr3 124188126 124188175 -103336403 + MER5B DNA MER1_type 2 49 -129 3448 184 15 33 chr3 124188196 124188930 -103335648 - L1MB2 LINE L1 -2 6169 5449 270 299 0 0 chr3 124189316 124189383 -103335195 + MIR SINE MIR 60 126 -136 608 270 87 36 chr3 124190232 124190428 -103334150 + MIR SINE MIR 42 247 -15 22 56 0 0 chr3 124190613 124190649 -103333929 + AT_rich Low_complexity Low_complexity 1 36 0 1824 100 83 17 chr3 124191278 124191568 -103333010 + AluSc SINE Alu 1 309 0 685 301 34 38 chr3 124191569 124191808 -103332770 - MIR SINE MIR -7 255 18 1996 115 3 10 chr3 124192196 124192492 -103332086 - AluSg SINE Alu -16 294 1 204 97 0 0 chr3 124194347 124194378 -103330200 + (CA)n Simple_repeat Simple_repeat 2 32 0 205 186 0 0 chr3 124194584 124194627 -103329951 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 2827 19 0 0 chr3 124194722 124195046 -103329532 - L1PA4 LINE L1 -478 5677 5354 3830 34 0 4 chr3 124195046 124195535 -103329043 + L1PA4 LINE L1 5686 6155 0 1573 28 0 0 chr3 124195741 124195923 -103328655 - L1P2 LINE L1 -1901 4245 4064 2111 174 51 7 chr3 124196013 124196428 -103328150 - Tigger2a DNA MER2_type 0 434 2 240 333 10 10 chr3 124197007 124197109 -103327469 + L1ME LINE L1 5486 5587 -577 867 241 21 17 chr3 124197120 124197356 -103327222 - L1PA16 LINE L1 -17 6149 5913 391 195 46 0 chr3 124197355 124197442 -103327136 - L1PA16 LINE L1 -163 6003 5913 * 893 220 22 0 chr3 124197441 124197623 -103326955 - L1PA16 LINE L1 -163 6003 5818 798 146 23 0 chr3 124197781 124197911 -103326667 + MLT1A1 LTR MaLR 4 136 -229 1269 161 4 38 chr3 124198089 124198325 -103326253 + MLT1A1 LTR MaLR 138 365 0 191 143 0 54 chr3 124198427 124198483 -103326095 + (A)n Simple_repeat Simple_repeat 1 53 0 28 61 0 0 chr3 124199544 124199593 -103324985 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr3 124201062 124201083 -103323495 + AT_rich Low_complexity Low_complexity 1 21 0 261 279 139 51 chr3 124201431 124201507 -103323071 + MIR SINE MIR 77 145 -117 2077 104 20 24 chr3 124201507 124201805 -103322773 + AluSx SINE Alu 1 297 -15 261 279 139 51 chr3 124201805 124201886 -103322692 + MIR SINE MIR 145 248 -14 235 277 108 12 chr3 124203030 124203113 -103321465 - L2 LINE L2 0 3313 3223 23 97 0 0 chr3 124203264 124203336 -103321242 + AT_rich Low_complexity Low_complexity 1 72 0 2423 99 31 6 chr3 124203722 124204075 -103320503 + THE1B LTR MaLR 3 364 0 267 279 70 0 chr3 124205488 124205574 -103319004 - MIR SINE MIR -74 134 43 562 200 45 0 chr3 124205666 124205776 -103318802 + L1MC3 LINE L1 7168 7282 -503 3732 159 13 21 chr3 124205792 124206472 -103318106 + L1MA6 LINE L1 5508 6182 -118 299 135 0 19 chr3 124206466 124206518 -103318060 - L1MA5 LINE L1 -53 6247 6197 * 625 111 28 9 chr3 124206638 124206746 -103317832 + L1MA5 LINE L1 6187 6296 -4 21 57 0 0 chr3 124206812 124206847 -103317731 + AT_rich Low_complexity Low_complexity 1 35 0 380 165 82 21 chr3 124206991 124207088 -103317490 + L1MA8 LINE L1 5691 5793 -507 243 200 0 20 chr3 124207094 124207144 -103317434 + (TATG)n Simple_repeat Simple_repeat 1 49 0 2011 192 41 31 chr3 124207144 124207654 -103316924 + L1MA8 LINE L1 5777 6291 0 244 159 16 16 chr3 124208606 124208669 -103315909 + CT-rich Low_complexity Low_complexity 2 64 0 2250 104 0 0 chr3 124208851 124209158 -103315420 - AluSx SINE Alu -5 307 1 3597 188 31 48 chr3 124209887 124210761 -103313817 - L1MB8 LINE L1 -5 6173 5315 1379 116 52 12 chr3 124210777 124211027 -103313551 - L1MA4 LINE L1 -160 6140 5881 2209 232 5 25 chr3 124211030 124211620 -103312958 - L1MB8 LINE L1 -1746 4400 3823 21 0 0 0 chr3 124211847 124211868 -103312710 + AT_rich Low_complexity Low_complexity 1 21 0 433 198 16 8 chr3 124212919 124213017 -103311561 - MER5A DNA MER1_type -86 103 4 1705 198 39 21 chr3 124213388 124213771 -103310807 - MLT1B LTR MaLR 0 390 1 356 130 14 0 chr3 124214815 124214884 -103309694 + (CA)n Simple_repeat Simple_repeat 1 70 0 2247 95 7 0 chr3 124215258 124215553 -103309025 - AluSp SINE Alu -16 297 1 1883 243 88 11 chr3 124215595 124216315 -103308263 + L1ME2 LINE L1 5129 5904 -260 344 267 38 29 chr3 124216339 124216444 -103308134 - MLT1G1 LTR MaLR -448 147 42 356 247 100 65 chr3 124216933 124217224 -103307354 + L1ME LINE L1 4386 4686 -1460 455 254 35 9 chr3 124217264 124217378 -103307200 - MLT1H1 LTR MaLR 0 555 439 261 237 48 48 chr3 124217380 124217492 -103307086 - MLT2F LTR ERVL 0 663 354 623 330 116 28 chr3 124217605 124218002 -103306576 - MLT1H1 LTR MaLR -123 432 1 258 32 0 0 chr3 124218094 124218125 -103306453 + (CA)n Simple_repeat Simple_repeat 2 32 0 824 285 47 39 chr3 124218195 124218907 -103305671 + L1ME LINE L1 4925 5648 -514 461 241 99 28 chr3 124218908 124219049 -103305529 + Charlie2b DNA MER1_type 1 151 -2631 7197 44 6 0 chr3 124219398 124220995 -103303583 - L1PA4 LINE L1 0 6155 4557 1115 280 162 50 chr3 124221004 124221112 -103303466 + Charlie2b DNA MER1_type 335 430 -2352 282 29 0 0 chr3 124221112 124221147 -103303431 + (CA)n Simple_repeat Simple_repeat 1 35 0 1115 280 162 50 chr3 124221147 124221877 -103302701 + Charlie2b DNA MER1_type 430 1267 -1515 * 1781 213 77 48 chr3 124221867 124222558 -103302020 + Charlie2b DNA MER1_type 2070 2780 -2 183 371 89 8 chr3 124222635 124222759 -103301819 - L2 LINE L2 -13 3300 3167 1336 172 33 0 chr3 124225147 124225503 -103299075 - L1M2 LINE L1 -745 5401 5136 3697 184 12 13 chr3 124225503 124226261 -103298317 + L1MA6 LINE L1 5542 6300 0 228 252 122 56 chr3 124226316 124226423 -103298155 + L3 LINE CR1 966 1079 -498 211 338 15 0 chr3 124226648 124226716 -103297862 - L2 LINE L2 0 3313 3245 216 313 150 25 chr3 124227222 124227382 -103297196 - MIR SINE MIR -5 257 78 238 326 101 0 chr3 124227993 124228122 -103296456 + L3 LINE CR1 1318 1459 -118 330 265 24 46 chr3 124228151 124228353 -103296225 + L1ME LINE L1 5467 5660 -461 25 51 0 0 chr3 124228426 124228465 -103296113 + AT_rich Low_complexity Low_complexity 1 39 0 237 159 0 0 chr3 124228921 124228965 -103295613 + (CA)n Simple_repeat Simple_repeat 1 44 0 300 254 0 0 chr3 124228965 124229020 -103295558 - MER2 DNA MER2_type 0 345 291 1459 244 60 17 chr3 124229448 124229981 -103294597 - L1MEc LINE L1 -4048 2348 1793 446 158 57 0 chr3 124230136 124230401 -103294177 + (TA)n Simple_repeat Simple_repeat 1 280 0 1982 140 0 0 chr3 124231105 124231384 -103293194 + AluSx SINE Alu 1 279 -33 243 318 6 29 chr3 124231556 124231729 -103292849 + T-rich Low_complexity Low_complexity 2 170 0 951 214 0 6 chr3 124231796 124231974 -103292604 + CT-rich Low_complexity Low_complexity 3 179 0 1982 140 0 0 chr3 124231975 124232254 -103292324 - AluSx SINE Alu -33 279 1 446 158 57 0 chr3 124232958 124233223 -103291355 + (TA)n Simple_repeat Simple_repeat 1 280 0 1444 243 60 19 chr3 124233378 124233912 -103290666 + L1MEc LINE L1 1793 2348 -4048 300 254 0 0 chr3 124234340 124234395 -103290183 + MER2 DNA MER2_type 291 345 0 237 159 0 0 chr3 124234395 124234439 -103290139 + (TG)n Simple_repeat Simple_repeat 1 44 0 25 51 0 0 chr3 124234895 124234934 -103289644 + AT_rich Low_complexity Low_complexity 1 39 0 330 265 24 46 chr3 124235007 124235209 -103289369 - L1ME LINE L1 -461 5660 5467 238 326 101 0 chr3 124235238 124235367 -103289211 - L3 LINE CR1 -118 1459 1318 216 313 150 25 chr3 124235978 124236138 -103288440 + MIR SINE MIR 78 257 -5 211 338 15 0 chr3 124236644 124236712 -103287866 + L2 LINE L2 3245 3313 0 228 252 122 56 chr3 124236937 124237044 -103287534 - L3 LINE CR1 -498 1079 966 3697 184 12 13 chr3 124237099 124237859 -103286719 - L1MA6 LINE L1 0 6300 5542 1336 172 33 0 chr3 124237857 124238213 -103286365 + L1M2 LINE L1 5136 5500 -745 183 371 89 8 chr3 124240602 124240726 -103283852 + L2 LINE L2 3167 3300 -13 1781 213 77 48 chr3 124240803 124241494 -103283084 - Charlie2 DNA MER1_type -2 2860 2150 1115 280 162 50 chr3 124241484 124242214 -103282364 - Charlie2b DNA MER1_type -1515 1267 430 * 282 29 0 0 chr3 124242214 124242249 -103282329 + (TG)n Simple_repeat Simple_repeat 1 35 0 1115 280 162 50 chr3 124242249 124242357 -103282221 - Charlie2b DNA MER1_type -2352 430 335 7302 39 6 3 chr3 124242366 124243963 -103280615 + L1PA4 LINE L1 4557 6155 0 461 241 99 28 chr3 124244312 124244453 -103280125 - Charlie2b DNA MER1_type -2711 151 1 824 285 47 39 chr3 124244454 124245166 -103279412 - L1ME LINE L1 -514 5648 4925 258 32 0 0 chr3 124245236 124245267 -103279311 + (TG)n Simple_repeat Simple_repeat 2 32 0 623 330 116 28 chr3 124245359 124245756 -103278822 + MLT1H1 LTR MaLR 1 432 -123 261 237 48 48 chr3 124245869 124245981 -103278597 + MLT2F LTR ERVL 354 663 0 455 254 35 9 chr3 124245983 124246097 -103278481 + MLT1H1 LTR MaLR 439 555 0 356 247 100 65 chr3 124246137 124246428 -103278150 - L1ME LINE L1 -1460 4686 4386 344 267 38 29 chr3 124246917 124247022 -103277556 + MLT1G1 LTR MaLR 42 147 -448 1883 243 88 11 chr3 124247046 124247766 -103276812 - L1ME2 LINE L1 -260 5904 5129 2247 95 7 0 chr3 124247808 124248103 -103276475 + AluSp SINE Alu 1 297 -16 356 130 14 0 chr3 124248477 124248546 -103276032 + (TG)n Simple_repeat Simple_repeat 1 70 0 1705 198 39 21 chr3 124249590 124249973 -103274605 + MLT1B LTR MaLR 1 390 0 433 198 16 8 chr3 124250344 124250442 -103274136 + MER5A DNA MER1_type 4 103 -86 21 0 0 0 chr3 124251493 124251514 -103273064 + AT_rich Low_complexity Low_complexity 1 21 0 2209 232 5 25 chr3 124251741 124252331 -103272247 + L1MB8 LINE L1 3823 4400 -1746 1379 116 52 12 chr3 124252334 124252584 -103271994 + L1MA4 LINE L1 5881 6140 -160 3597 188 31 48 chr3 124252600 124253474 -103271104 + L1MB8 LINE L1 5315 6173 -5 2250 104 0 0 chr3 124254203 124254510 -103270068 + AluSx SINE Alu 1 307 -5 244 159 16 16 chr3 124254692 124254755 -103269823 + GA-rich Low_complexity Low_complexity 2 64 0 2011 192 41 31 chr3 124255706 124256216 -103268362 - L1MA8 LINE L1 0 6291 5777 243 200 0 20 chr3 124256216 124256266 -103268312 + (CATA)n Simple_repeat Simple_repeat 1 49 0 380 165 82 21 chr3 124256272 124256369 -103268209 - L1MA8 LINE L1 -507 5793 5691 21 57 0 0 chr3 124256513 124256548 -103268030 + AT_rich Low_complexity Low_complexity 1 35 0 625 111 28 9 chr3 124256614 124256722 -103267856 - L1MA5 LINE L1 -4 6296 6187 299 135 0 19 chr3 124256842 124256894 -103267684 + L1MA5 LINE L1 6197 6247 -53 * 3732 159 13 21 chr3 124256888 124257568 -103267010 - L1MA6 LINE L1 -118 6182 5508 562 200 45 0 chr3 124257584 124257694 -103266884 - L1MC3 LINE L1 -503 7282 7168 267 279 70 0 chr3 124257786 124257872 -103266706 + MIR SINE MIR 43 134 -74 2423 99 31 6 chr3 124259285 124259638 -103264940 - THE1B LTR MaLR 0 364 3 23 97 0 0 chr3 124260024 124260096 -103264482 + AT_rich Low_complexity Low_complexity 1 72 0 235 277 108 12 chr3 124260247 124260330 -103264248 + L2 LINE L2 3223 3313 0 261 279 139 51 chr3 124261474 124261555 -103263023 - MIR SINE MIR -14 248 176 2077 104 20 24 chr3 124261555 124261853 -103262725 - AluSx SINE Alu -15 297 1 261 279 139 51 chr3 124261853 124261929 -103262649 - MIR SINE MIR -86 176 77 21 0 0 0 chr3 124262277 124262298 -103262280 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr3 124263767 124263816 -103260762 + AT_rich Low_complexity Low_complexity 1 49 0 191 143 0 54 chr3 124264877 124264933 -103259645 + (T)n Simple_repeat Simple_repeat 1 53 0 1269 161 4 38 chr3 124265035 124265271 -103259307 - MLT1A1 LTR MaLR 0 365 138 798 146 23 0 chr3 124265449 124265579 -103258999 - MLT1A1 LTR MaLR -229 136 4 893 220 22 0 chr3 124265737 124265919 -103258659 + L1PA16 LINE L1 5818 6003 -163 391 195 46 0 chr3 124265918 124266005 -103258573 + L1PA16 LINE L1 5913 6003 -163 * 867 241 21 17 chr3 124266004 124266240 -103258338 + L1PA16 LINE L1 5913 6149 -17 240 333 10 10 chr3 124266251 124266353 -103258225 - L1ME LINE L1 -577 5587 5486 2111 174 51 7 chr3 124266932 124267347 -103257231 + Tigger2a DNA MER2_type 2 434 0 1573 28 0 0 chr3 124267437 124267619 -103256959 + L1P2 LINE L1 4064 4245 -1901 3830 34 0 4 chr3 124267825 124268315 -103256263 - L1PA4 LINE L1 0 6155 5686 2820 19 0 0 chr3 124268315 124268638 -103255940 + L1PA4 LINE L1 5355 5677 -478 205 186 0 0 chr3 124268733 124268776 -103255802 + (TTTA)n Simple_repeat Simple_repeat 4 46 0 204 97 0 0 chr3 124268982 124269013 -103255565 + (TG)n Simple_repeat Simple_repeat 2 32 0 1996 115 3 10 chr3 124270868 124271164 -103253414 + AluSg SINE Alu 1 294 -16 685 301 34 38 chr3 124271552 124271791 -103252787 + MIR SINE MIR 18 255 -7 1824 100 83 17 chr3 124271792 124272082 -103252496 - AluSc SINE Alu 0 309 1 22 56 0 0 chr3 124272711 124272747 -103251831 + AT_rich Low_complexity Low_complexity 1 36 0 608 270 87 36 chr3 124272932 124273128 -103251450 - MIR SINE MIR -15 247 42 270 299 0 0 chr3 124273977 124274044 -103250534 - MIR SINE MIR -136 126 60 3448 184 15 33 chr3 124274430 124275164 -103249414 + L1MB2 LINE L1 5449 6169 -2 301 143 0 20 chr3 124275185 124275234 -103249344 - MER5B DNA MER1_type -129 49 2 342 200 15 0 chr3 124275248 124275313 -103249265 + MER5A DNA MER1_type 1 66 -123 2659 58 0 0 chr3 124276413 124276738 -103247840 - LTR17 LTR ERV1 -454 326 2 1510 87 0 0 chr3 124276739 124276934 -103247644 - HERV17 LTR ERV1 0 8626 8432 21 0 0 0 chr3 124276977 124276998 -103247580 + AT_rich Low_complexity Low_complexity 1 21 0 1095 252 222 23 chr3 124277085 124277652 -103246926 - L1MC4 LINE L1 -138 7904 7225 803 58 0 0 chr3 124277678 124277782 -103246796 - L1MA1 LINE L1 -4 6298 6195 4672 175 29 48 chr3 124277783 124277975 -103246603 - L1M1 LINE L1 -5918 1647 1453 2106 122 0 0 chr3 124277975 124278271 -103246307 + AluSc SINE Alu 1 296 -13 4672 175 29 48 chr3 124278271 124278998 -103245580 - L1M1 LINE L1 -6112 1453 745 517 257 15 7 chr3 124279003 124279139 -103245439 - L1M1 LINE L1 -7031 534 398 3117 231 23 8 chr3 124279560 124280264 -103244314 - L1M1 LINE L1 -6830 735 22 573 265 54 0 chr3 124280274 124280478 -103244100 - L1MC4 LINE L1 -802 7240 7026 2351 264 58 14 chr3 124280526 124281454 -103243124 - L1ME1 LINE L1 -4 6162 5190 82 43 0 0 chr3 124281480 124281597 -103242981 + AT_rich Low_complexity Low_complexity 1 117 0 269 172 40 20 chr3 124281601 124281723 -103242855 + (TTA)n Simple_repeat Simple_repeat 3 103 0 337 170 67 24 chr3 124281634 124281680 -103242898 + (TTATA)n Simple_repeat Simple_repeat 5 48 -128 183 42 0 0 chr3 124281680 124281704 -103242874 + (TATAA)n Simple_repeat Simple_repeat 3 26 0 337 170 67 24 chr3 124281704 124281822 -103242756 + (TTATA)n Simple_repeat Simple_repeat 48 176 0 336 129 71 12 chr3 124281882 124281967 -103242611 - L1ME1 LINE L1 -951 5195 5106 486 331 70 8 chr3 124282211 124282453 -103242125 - L1MEc LINE L1 -6109 287 31 1997 117 23 19 chr3 124283676 124283985 -103240593 + AluSx SINE Alu 1 310 -2 750 184 147 6 chr3 124284073 124284236 -103240342 - MER5A DNA MER1_type -1 188 3 278 284 90 36 chr3 124285398 124285576 -103239002 - MIR3 SINE MIR -3 205 20 335 331 27 27 chr3 124286282 124286430 -103238148 - MIR3 SINE MIR -9 199 52 202 314 24 123 chr3 124287195 124287413 -103237165 + MIR SINE MIR 20 216 -46 204 283 0 0 chr3 124288786 124288832 -103235746 - L2 LINE L2 -4 3268 3223 581 193 27 64 chr3 124289567 124289754 -103234824 + MER46C DNA MER2_type 19 198 -140 2562 50 0 0 chr3 124289802 124290105 -103234473 + AluY SINE Alu 1 303 -8 26 74 0 0 chr3 124290140 124290194 -103234384 + AT_rich Low_complexity Low_complexity 1 54 0 888 283 17 0 chr3 124290241 124290474 -103234104 + MIR SINE MIR 1 237 -25 538 296 78 84 chr3 124290536 124290691 -103233887 + L1ME3A LINE L1 4762 4916 -1230 2096 117 4 0 chr3 124290691 124291027 -103233551 - AluY SINE Alu 0 337 1 538 296 78 84 chr3 124291027 124291367 -103233211 + L1ME3A LINE L1 4916 5255 -891 1013 278 87 34 chr3 124291370 124292022 -103232556 + L1ME3A LINE L1 5259 5945 -225 4302 22 0 0 chr3 124292160 124292656 -103231922 - L1PA3 LINE L1 -16 6139 5644 6255 115 94 7 chr3 124292665 124293816 -103230762 - L1PBa LINE L1 -3776 3086 1835 944 149 16 48 chr3 124293809 124293997 -103230581 - L1PBa LINE L1 -6048 815 634 * 539 179 9 0 chr3 124293997 124294103 -103230475 - L1PBa LINE L1 -6663 200 94 2354 77 0 7 chr3 124294318 124294615 -103229963 + AluY SINE Alu 1 295 -16 180 0 0 0 chr3 124294615 124294635 -103229943 + (TA)n Simple_repeat Simple_repeat 2 21 0 2497 79 38 0 chr3 124295125 124295467 -103229111 + THE1A LTR MaLR 1 355 0 630 187 0 8 chr3 124295950 124296073 -103228505 - L1PBa LINE L1 -6739 124 3 281 249 57 115 chr3 124296124 124296333 -103228245 - HAL1 LINE L1 -1556 951 755 266 291 103 43 chr3 124296600 124296834 -103227744 - HAL1 LINE L1 -1986 521 274 435 37 0 0 chr3 124297079 124297133 -103227445 + MADE1 DNA Mariner 1 54 -26 2270 100 0 3 chr3 124298301 124298601 -103225977 + AluSg SINE Alu 1 299 -11 363 332 175 14 chr3 124298906 124299123 -103225455 + MIR SINE MIR 2 253 -9 587 349 146 17 chr3 124300312 124300662 -103223916 - LTR16A LTR ERVL -1 449 55 951 207 19 109 chr3 124300732 124300998 -103223580 - MLT1B LTR MaLR 0 383 133 31 44 0 0 chr3 124301041 124301086 -103223492 + AT_rich Low_complexity Low_complexity 1 45 0 209 408 10 10 chr3 124302510 124302613 -103221965 + L2 LINE L2 3167 3269 -3 2132 120 10 0 chr3 124303602 124303902 -103220676 - AluSx SINE Alu -9 303 1 275 254 42 0 chr3 124304173 124304244 -103220334 + L2 LINE L2 3224 3297 -16 889 281 114 52 chr3 124305095 124305614 -103218964 + MLT1H1 LTR MaLR 3 553 -2 308 171 57 14 chr3 124305916 124305986 -103218592 - MIR SINE MIR -112 150 78 457 325 26 0 chr3 124306045 124306196 -103218382 + L2 LINE L2 3118 3272 0 222 0 79 0 chr3 124307024 124307062 -103217516 + (CAA)n Simple_repeat Simple_repeat 2 42 0 2287 101 0 7 chr3 124307400 124307706 -103216872 + AluSx SINE Alu 1 304 -8 334 194 11 11 chr3 124307706 124307788 -103216790 + GA-rich Low_complexity Low_complexity 10 94 0 608 193 0 7 chr3 124308863 124308998 -103215580 + CT-rich Low_complexity Low_complexity 3 136 0 21 0 0 0 chr3 124309030 124309051 -103215527 + GC_rich Low_complexity Low_complexity 1 21 0 1306 13 0 0 chr3 124309711 124309861 -103214717 - L1PA2 LINE L1 -159 5996 5847 633 13 0 13 chr3 124309855 124309932 -103214646 + L1PA2 LINE L1 5739 5814 -341 * 5825 122 11 2 chr3 124310123 124311009 -103213569 + L1PB1 LINE L1 5258 6151 0 246 336 62 18 chr3 124311021 124311134 -103213444 - MIR3 SINE MIR -76 132 15 201 233 0 0 chr3 124311566 124311609 -103212969 + CT-rich Low_complexity Low_complexity 2 44 0 1086 176 5 3 chr3 124311981 124312207 -103212371 - AluJb SINE Alu -8 304 2 1853 157 0 0 chr3 124312245 124312532 -103212046 - AluSx SINE Alu -25 287 1 247 313 12 25 chr3 124313377 124313457 -103211121 + MIR SINE MIR 5 83 -179 309 327 24 36 chr3 124313504 124313638 -103210940 + MIR SINE MIR 79 212 -50 2300 92 0 0 chr3 124313638 124313933 -103210645 - AluY SINE Alu -16 295 1 309 327 24 36 chr3 124313933 124313966 -103210612 + MIR SINE MIR 212 244 -18 2020 112 14 10 chr3 124314006 124314301 -103210277 - AluSx SINE Alu -16 296 1 2460 81 11 30 chr3 124315047 124315419 -103209159 - L1MA1 LINE L1 -4 6298 5934 35925 92 23 5 chr3 124315667 124321701 -103202877 - L1PA6 LINE L1 -1 6153 11 615 254 37 11 chr3 124322010 124322199 -103202379 - L1MC4a LINE L1 -512 7296 7103 544 307 80 24 chr3 124322228 124322440 -103202138 - MIR SINE MIR -21 241 18 1357 233 33 64 chr3 124322477 124322933 -103201645 + L1MD3 LINE L1 7541 7982 -13 24 0 0 0 chr3 124323359 124323383 -103201195 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr3 124324396 124324422 -103200156 + AT_rich Low_complexity Low_complexity 1 26 0 347 252 259 8 chr3 124325352 124325483 -103199095 + MER5A DNA MER1_type 23 186 -3 372 378 88 13 chr3 124326657 124327041 -103197537 - L2 LINE L2 -470 2844 2432 33 43 0 0 chr3 124327091 124327138 -103197440 + AT_rich Low_complexity Low_complexity 1 47 0 27064 81 4 1 chr3 124328519 124333026 -103191552 + L1PA7 LINE L1 1632 6154 0 22 70 0 0 chr3 124334832 124334875 -103189703 + AT_rich Low_complexity Low_complexity 1 43 0 416 258 125 88 chr3 124336040 124336280 -103188298 + L2 LINE L2 1367 1615 -1699 195 152 0 0 chr3 124336348 124336394 -103188184 + (TA)n Simple_repeat Simple_repeat 1 46 0 24 0 0 0 chr3 124337235 124337259 -103187319 + AT_rich Low_complexity Low_complexity 1 24 0 333 264 38 25 chr3 124338334 124338493 -103186085 - L1MC4a LINE L1 -1929 5879 5719 441 277 62 17 chr3 124338757 124338934 -103185644 - MIR SINE MIR -3 259 75 280 256 51 68 chr3 124339054 124339171 -103185407 + MIR SINE MIR 98 212 -50 21 57 0 0 chr3 124339452 124339487 -103185091 + AT_rich Low_complexity Low_complexity 1 35 0 1939 109 26 7 chr3 124339819 124340121 -103184457 + L1PA11 LINE L1 5867 6174 0 23 33 0 0 chr3 124340349 124340379 -103184199 + AT_rich Low_complexity Low_complexity 1 30 0 1498 124 4 35 chr3 124340383 124340642 -103183936 - L1MA1 LINE L1 -7 6295 6045 2237 92 0 0 chr3 124341408 124341702 -103182876 + AluSg1 SINE Alu 1 294 -15 1573 76 44 9 chr3 124342015 124342240 -103182338 + MLT2A1 LTR ERVL 2 234 -210 7142 177 21 1 chr3 124342240 124342934 -103181644 + L1PB1 LINE L1 3701 4380 -1771 387 0 0 0 chr3 124342934 124342977 -103181601 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 7142 177 21 1 chr3 124342977 124344324 -103180254 + L1PB1 LINE L1 4380 5699 -452 366 23 0 0 chr3 124344324 124344367 -103180211 + (CA)n Simple_repeat Simple_repeat 2 44 0 * 489 59 0 35 chr3 124344366 124344451 -103180127 + (TA)n Simple_repeat Simple_repeat 2 83 0 7142 177 21 1 chr3 124344367 124344658 -103179920 + L1PB1 LINE L1 5699 5999 -152 216 200 0 0 chr3 124344678 124344723 -103179855 + (TTA)n Simple_repeat Simple_repeat 2 46 0 419 256 67 0 chr3 124345120 124345210 -103179368 + FLAM_A SINE Alu 1 96 -37 306 183 0 0 chr3 124345233 124345304 -103179274 + (TA)n Simple_repeat Simple_repeat 1 71 0 927 226 21 47 chr3 124345367 124345602 -103178976 + MLT1D LTR MaLR 277 505 0 227 276 17 0 chr3 124345622 124345680 -103178898 - LTR16C LTR ERVL -222 269 211 370 394 33 39 chr3 124345931 124346238 -103178340 + L2 LINE L2 2967 3271 -1 1704 258 55 46 chr3 124347481 124348067 -103176511 + MLT1E LTR MaLR 3 593 0 217 336 71 14 chr3 124348203 124348343 -103176235 + MIR SINE MIR 109 256 -6 204 327 49 37 chr3 124348357 124348519 -103176059 + L2 LINE L2 2890 3053 -219 28 0 0 0 chr3 124349841 124349869 -103174709 + AT_rich Low_complexity Low_complexity 1 28 0 253 248 158 20 chr3 124350497 124350598 -103173980 + L3 LINE CR1 1246 1360 -217 217 374 12 12 chr3 124350661 124350744 -103173834 + L3 LINE CR1 1484 1566 -11 1190 221 120 43 chr3 124351230 124351606 -103172972 - MLT2D LTR ERVL 0 414 10 640 214 16 87 chr3 124352099 124352236 -103172342 - L1MA4 LINE L1 0 6300 6188 2432 71 0 7 chr3 124352236 124352545 -103172033 - AluY SINE Alu -1 310 4 640 214 16 87 chr3 124352545 124352659 -103171919 - L1MA4 LINE L1 -112 6188 6067 5975 207 60 15 chr3 124352667 124355828 -103168750 - L1 LINE L1 -3035 3293 4 29 70 0 0 chr3 124355906 124355963 -103168615 + AT_rich Low_complexity Low_complexity 1 57 0 23 68 0 0 chr3 124356063 124356107 -103168471 + AT_rich Low_complexity Low_complexity 1 44 0 2347 81 0 0 chr3 124356456 124356764 -103167814 - AluY SINE Alu 0 311 4 621 278 47 6 chr3 124356961 124357130 -103167448 - MER5B DNA MER1_type 0 178 3 2566 94 11 18 chr3 124358139 124358521 -103166057 - L1PB2 LINE L1 -2 6149 5771 251 282 97 51 chr3 124358537 124358732 -103165846 - MIR SINE MIR -6 256 53 13813 152 7 22 chr3 124358951 124362289 -103162289 - L1PA11 LINE L1 -12 6162 2849 1561 140 19 4 chr3 124362289 124362553 -103162025 - L1P5 LINE L1 -362 5789 5522 26 50 0 0 chr3 124362848 124362888 -103161690 + AT_rich Low_complexity Low_complexity 1 40 0 1369 47 0 0 chr3 124364652 124364822 -103159756 - L1PA4 LINE L1 -3 6152 5983 2689 25 0 3 chr3 124364822 124365136 -103159442 + L1PA4 LINE L1 5662 5974 -181 2146 135 0 0 chr3 124365318 124365630 -103158948 - AluSx SINE Alu 0 312 1 2293 351 60 46 chr3 124365709 124367521 -103157057 - ERVL LTR ERVL -1098 4666 2826 1835 154 55 30 chr3 124367521 124367885 -103156693 + THE1C LTR MaLR 1 373 -2 2293 351 60 46 chr3 124367885 124367935 -103156643 - ERVL LTR ERVL -2938 2826 2778 1308 176 14 95 chr3 124367935 124368054 -103156524 + L1MA8 LINE L1 5827 5954 -337 2098 107 7 3 chr3 124368054 124368344 -103156234 + AluSc SINE Alu 1 291 -18 1308 176 14 95 chr3 124368344 124368593 -103155985 + L1MA8 LINE L1 5954 6165 -126 352 304 54 69 chr3 124368599 124368934 -103155644 - L1MEd LINE L1 -5124 995 666 439 296 32 104 chr3 124368965 124369367 -103155211 - L1MEd LINE L1 -5662 457 85 440 251 55 27 chr3 124369525 124369744 -103154834 - L1MC5 LINE L1 -114 7847 7623 906 234 106 52 chr3 124369825 124370287 -103154291 - L1MC5 LINE L1 -570 7391 6905 1441 113 0 193 chr3 124370459 124370832 -103153746 + AluSx SINE Alu 1 301 -1 257 294 47 65 chr3 124371126 124371340 -103153238 - L1MC5 LINE L1 -1853 5955 5746 203 286 43 29 chr3 124371377 124371447 -103153131 - L3 LINE CR1 -528 1049 979 305 361 110 17 chr3 124371526 124371825 -103152753 - L3 LINE CR1 -727 850 524 27 49 0 0 chr3 124371904 124371945 -103152633 + AT_rich Low_complexity Low_complexity 1 41 0 401 147 2 0 chr3 124372430 124372500 -103152078 - AluJo SINE Alu -4 298 236 701 176 0 78 chr3 124372501 124372654 -103151924 - AluJo SINE Alu -171 141 1 180 229 108 36 chr3 124373815 124373898 -103150680 + MIR SINE MIR 92 180 -82 4188 177 19 43 chr3 124374483 124375737 -103148841 + L1MA9 LINE L1 4904 6245 -67 202 276 13 53 chr3 124376001 124376077 -103148501 + L2 LINE L2 3189 3261 -11 27 0 0 0 chr3 124376148 124376175 -103148403 + AT_rich Low_complexity Low_complexity 1 27 0 230 120 0 40 chr3 124376522 124376572 -103148006 + (TAAAAA)n Simple_repeat Simple_repeat 4 51 0 1443 210 77 39 chr3 124377834 124378252 -103146326 - MER31B LTR ERV1 -4 510 1 233 284 71 98 chr3 124378648 124378804 -103145774 + MER5A DNA MER1_type 1 165 -24 302 299 250 5 chr3 124378988 124379192 -103145386 - MIR SINE MIR -5 257 4 481 292 111 97 chr3 124379263 124379780 -103144798 - L1ME4a LINE L1 -57 6064 5556 1382 223 37 45 chr3 124379780 124380157 -103144421 - MLT1A2 LTR MaLR 0 374 1 481 292 111 97 chr3 124380157 124380295 -103144283 - L1ME4a LINE L1 -565 5556 5396 2230 102 0 3 chr3 124380295 124380590 -103143988 - AluSx SINE Alu -18 294 1 481 292 111 97 chr3 124380590 124380615 -103143963 - L1ME4a LINE L1 -725 5396 5373 447 253 146 6 chr3 124380690 124380848 -103143730 - MIR SINE MIR -11 251 72 202 366 12 12 chr3 124381952 124382034 -103142544 - L2 LINE L2 -8 3305 3224 380 172 0 21 chr3 124382743 124382836 -103141742 + L1PA15 LINE L1 6075 6165 0 314 183 0 12 chr3 124383417 124383499 -103141079 + CT-rich Low_complexity Low_complexity 2 82 0 281 216 43 26 chr3 124384276 124384431 -103140147 + (TTATA)n Simple_repeat Simple_repeat 1 157 0 1898 205 32 9 chr3 124384509 124384943 -103139635 - L1MA9 LINE L1 -38 6274 5831 186 43 0 0 chr3 124385354 124385377 -103139201 + (A)n Simple_repeat Simple_repeat 1 23 0 185 243 0 162 chr3 124385823 124385959 -103138619 - MIR SINE MIR -96 166 53 2441 170 47 7 chr3 124386218 124386647 -103137931 + Tigger2 DNA MER2_type 2273 2718 0 2687 19 0 0 chr3 124387947 124388256 -103136322 - AluYa5 SINE Alu -2 309 1 237 189 176 0 chr3 124390356 124390430 -103134148 + MLT1J1 LTR MaLR 360 446 0 2149 168 23 28 chr3 124390504 124390932 -103133646 + MSTB LTR MaLR 1 426 0 8685 179 26 3 chr3 124390932 124392479 -103132099 + MSTB-int LTR MaLR 1 1583 -68 1112 66 0 0 chr3 124392480 124392617 -103131961 + AluY SINE Alu 166 302 -9 417 157 0 24 chr3 124392618 124392701 -103131877 + MSTB-int LTR MaLR 1571 1651 0 2071 178 46 12 chr3 124392703 124393113 -103131465 + MSTB LTR MaLR 3 426 0 679 219 0 29 chr3 124393214 124393351 -103131227 - FLAM_C SINE Alu -10 133 1 495 301 35 10 chr3 124393364 124393563 -103131015 - L1ME2 LINE L1 -27 6137 5934 24 85 0 0 chr3 124395624 124395683 -103128895 + AT_rich Low_complexity Low_complexity 1 59 0 266 354 85 32 chr3 124395798 124396210 -103128368 + L2 LINE L2 1076 1509 -1805 300 311 0 0 chr3 124396217 124396291 -103128287 - MER94 DNA DNA -22 112 39 676 326 164 54 chr3 124396487 124397617 -103126961 + L2 LINE L2 1605 2858 -456 299 161 0 12 chr3 124397832 124397913 -103126665 + (TA)n Simple_repeat Simple_repeat 1 80 0 29 28 0 0 chr3 124398366 124398402 -103126176 + AT_rich Low_complexity Low_complexity 1 36 0 2159 194 30 76 chr3 124399670 124400210 -103124368 + MLT2B2 LTR ERVL 1 515 0 4816 156 30 25 chr3 124400285 124401441 -103123137 + L1MA8 LINE L1 4895 6266 -25 22 35 0 0 chr3 124401445 124401474 -103123104 + AT_rich Low_complexity Low_complexity 1 29 0 249 329 0 0 chr3 124401520 124401590 -103122988 + MIR SINE MIR 72 141 -121 4480 27 0 0 chr3 124402420 124402944 -103121634 - L1PA3 LINE L1 -3 6152 5629 561 365 37 54 chr3 124403419 124404010 -103120568 + L3 LINE CR1 899 1479 -98 2884 255 42 44 chr3 124404149 124404932 -103119646 + L1ME1 LINE L1 4394 5177 -1157 1599 177 99 6 chr3 124404932 124405266 -103119312 + MLT1A1 LTR MaLR 1 365 0 2884 255 42 44 chr3 124405266 124406268 -103118310 + L1ME1 LINE L1 5177 6334 0 2972 17 0 17 chr3 124406368 124406723 -103117855 + L1PA2 LINE L1 5802 6150 -5 186 43 0 0 chr3 124406746 124406769 -103117809 + (A)n Simple_repeat Simple_repeat 1 23 0 1025 155 0 0 chr3 124406860 124407021 -103117557 + AluSg/x SINE Alu 136 296 -14 351 44 0 0 chr3 124407569 124407614 -103116964 + (TG)n Simple_repeat Simple_repeat 1 45 0 1401 208 14 17 chr3 124408422 124408716 -103115862 - AluJo SINE Alu -9 293 1 405 299 101 48 chr3 124408716 124409094 -103115484 - L1MEd LINE L1 -4911 1208 811 1728 192 55 18 chr3 124409585 124410030 -103114548 - MER31A LTR ERV1 0 661 6 1382 226 133 29 chr3 124410110 124410584 -103113994 - MER66A LTR ERV1 0 478 97 432 0 0 0 chr3 124410645 124410693 -103113885 + (CA)n Simple_repeat Simple_repeat 2 49 0 196 352 65 55 chr3 124411285 124411700 -103112878 + L2 LINE L2 996 1414 -1900 3212 291 81 18 chr3 124412000 124413305 -103111273 - L2 LINE L2 -84 3229 1842 1826 179 23 31 chr3 124413338 124413728 -103110850 - L1MC1 LINE L1 -6 6327 5941 33 25 0 0 chr3 124413741 124413781 -103110797 + AT_rich Low_complexity Low_complexity 1 40 0 545 143 0 9 chr3 124413926 124414031 -103110547 + (TCTG)n Simple_repeat Simple_repeat 3 106 0 547 292 102 14 chr3 124414033 124414249 -103110329 - L2 LINE L2 -1797 1517 1283 23 33 0 0 chr3 124414273 124414303 -103110275 + AT_rich Low_complexity Low_complexity 1 30 0 2353 267 53 24 chr3 124414583 124415483 -103109095 + L1MC4 LINE L1 6409 7361 -681 307 176 0 0 chr3 124415482 124415533 -103109045 - L1MC1 LINE L1 -807 5526 5476 * 336 295 19 0 chr3 124415530 124415635 -103108943 - L1MC4a LINE L1 -200 7608 7502 1567 208 62 3 chr3 124415735 124416105 -103108473 - L1P LINE L1 -921 5225 4834 1113 181 45 21 chr3 124416093 124416336 -103108242 + L1P LINE L1 4570 4818 -1328 * 1999 162 35 0 chr3 124416354 124416694 -103107884 - L1MC1 LINE L1 -2 6331 5980 2146 123 7 0 chr3 124418171 124418481 -103106097 - AluSp SINE Alu -1 312 1 601 296 85 0 chr3 124418683 124418882 -103105696 - MIR SINE MIR -16 246 31 23 0 0 0 chr3 124418926 124418949 -103105629 + AT_rich Low_complexity Low_complexity 1 23 0 2218 247 78 41 chr3 124419449 124420145 -103104433 - L1M4 LINE L1 -2576 3570 2815 1773 101 75 15 chr3 124420145 124420478 -103104100 + AluSx SINE Alu 1 349 0 2218 247 78 41 chr3 124420478 124420886 -103103692 - L1M4 LINE L1 -3331 2815 2424 2172 115 0 0 chr3 124420926 124421214 -103103364 - AluSg SINE Alu -22 288 1 2967 165 6 17 chr3 124421219 124421741 -103102837 + Tigger1 DNA MER2_type 11 526 -1892 3803 138 34 6 chr3 124421747 124422386 -103102192 + Tigger1 DNA MER2_type 634 1290 -1128 322 295 161 27 chr3 124422716 124422865 -103101713 + MER5B DNA MER1_type 4 172 -6 672 286 124 0 chr3 124423369 124423586 -103100992 + MIR SINE MIR 12 255 -7 225 266 91 61 chr3 124424440 124424612 -103099966 + MIR SINE MIR 41 207 -51 278 256 47 23 chr3 124424774 124424860 -103099718 + L2 LINE L2 3182 3269 -3 323 287 14 63 chr3 124425154 124425297 -103099281 - L2 LINE L2 -22 3291 3156 4030 147 39 1 chr3 124425522 124426190 -103098388 - Tigger2 DNA MER2_type -366 2352 1660 1072 243 129 73 chr3 124426190 124426723 -103097855 + LTR28 LTR ERV1 1 647 -282 535 153 10 10 chr3 124426728 124426826 -103097752 + MER4A LTR ERV1 1 98 -566 * 1706 138 3 76 chr3 124426821 124427197 -103097381 + MER4A LTR ERV1 256 662 -2 537 282 128 26 chr3 124427197 124427461 -103097117 + LTR28 LTR ERV1 693 983 -37 362 310 9 17 chr3 124427489 124427605 -103096973 + LTR28 LTR ERV1 900 1014 -6 7999 184 51 21 chr3 124427605 124429222 -103095356 - Tigger2 DNA MER2_type -1049 1669 4 1235 296 70 31 chr3 124429340 124429887 -103094691 - L1MCc LINE L1 -5831 592 25 414 262 58 49 chr3 124429935 124430160 -103094418 - L1M4 LINE L1 -2846 3300 3074 684 324 91 34 chr3 124430834 124431186 -103093392 - LTR16B LTR ERVL -16 448 77 626 258 114 21 chr3 124431665 124432046 -103092532 - LTR16B LTR ERVL 0 464 3 1357 343 23 42 chr3 124432074 124433266 -103091312 - ERVL LTR ERVL -26 5383 4270 330 362 46 32 chr3 124433257 124433475 -103091103 - HERV16 LTR ERVL -3907 1089 869 * 486 342 105 23 chr3 124433554 124433864 -103090714 - HERV16 LTR ERVL -4225 771 421 1985 138 21 24 chr3 124433864 124434240 -103090338 - THE1C LTR MaLR 0 375 1 486 342 105 23 chr3 124434240 124434321 -103090257 - HERV16 LTR ERVL -4575 421 348 619 348 85 30 chr3 124434414 124434470 -103090108 - LTR16B LTR ERVL -4 460 409 2093 125 3 0 chr3 124434470 124434765 -103089813 + AluSx SINE Alu 1 296 -16 619 348 85 30 chr3 124434765 124435142 -103089436 - LTR16B LTR ERVL -55 409 3 1292 310 50 0 chr3 124435327 124435727 -103088851 - LTR16B LTR ERVL 0 464 45 1189 217 58 85 chr3 124435829 124436239 -103088339 - MLT1C LTR MaLR -2 465 67 370 304 9 89 chr3 124436366 124436590 -103087988 + L2 LINE L2 3080 3285 -28 180 217 0 0 chr3 124436854 124436900 -103087678 + A-rich Low_complexity Low_complexity 1 46 0 255 125 0 0 chr3 124438821 124438861 -103085717 + (CA)n Simple_repeat Simple_repeat 1 40 0 259 268 0 14 chr3 124439232 124439303 -103085275 - Tigger5 DNA MER2_type 0 2323 2254 835 187 0 7 chr3 124439404 124439559 -103085019 - Tigger5 DNA MER2_type -90 2233 2080 461 253 0 11 chr3 124439553 124439648 -103084930 - Tigger5 DNA MER2_type -2229 94 1 * 357 277 97 13 chr3 124440872 124441027 -103083551 - L2 LINE L2 -23 3290 3123 253 266 177 16 chr3 124441037 124441161 -103083417 - L2 LINE L2 -20 3293 3150 195 238 99 109 chr3 124441285 124441386 -103083192 - L2 LINE L2 -175 3138 3039 1905 131 22 0 chr3 124441432 124441753 -103082825 - L1MA3 LINE L1 0 6305 5978 6291 142 40 5 chr3 124441756 124442886 -103081692 - L1MC1 LINE L1 -10 6323 5160 23 54 0 0 chr3 124443060 124443097 -103081481 + AT_rich Low_complexity Low_complexity 1 37 0 17233 25 0 5 chr3 124443097 124446012 -103078566 - L1HS LINE L1 -1 6171 3329 3012 24 0 0 chr3 124445982 124446362 -103078216 + L1HS LINE L1 2980 3359 -2787 * 410 266 50 0 chr3 124446484 124446623 -103077955 - L1M4 LINE L1 -1893 4253 4108 307 220 14 106 chr3 124446623 124446764 -103077814 - L1M4 LINE L1 -2392 3754 3627 3688 171 36 13 chr3 124496767 124498258 -103026320 + L1PA14 LINE L1 4597 6128 -3 279 0 0 0 chr3 124498430 124498461 -103026117 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr3 124499379 124499400 -103025178 + AT_rich Low_complexity Low_complexity 1 21 0 899 213 129 4 chr3 124499661 124499886 -103024692 - MLT1E1 LTR MaLR -401 253 1 1408 301 20 20 chr3 124499975 124500433 -103024145 + ERVL LTR ERVL 4019 4476 -1288 322 368 73 41 chr3 124500815 124501169 -103023409 - L2 LINE L2 -345 2927 2568 27 62 0 0 chr3 124501301 124501349 -103023229 + AT_rich Low_complexity Low_complexity 1 48 0 1427 242 25 6 chr3 124502095 124502417 -103022161 + L1MA3 LINE L1 9 336 -7229 * 6379 175 28 13 chr3 124502406 124504962 -103019616 + L1MA3 LINE L1 5065 7721 -3 335 337 103 11 chr3 124506335 124506519 -103018059 + MIR SINE MIR 20 220 -42 22 35 0 0 chr3 124507005 124507034 -103017544 + AT_rich Low_complexity Low_complexity 1 29 0 2320 97 0 0 chr3 124507598 124507898 -103016680 + AluSc SINE Alu 1 300 -9 383 236 200 0 chr3 124508039 124508149 -103016429 - MER63 DNA MER1_type -304 758 1 414 77 0 0 chr3 124508258 124508310 -103016268 + MSTA LTR MaLR 377 428 0 403 191 26 61 chr3 124508312 124508427 -103016151 - L1MA9 LINE L1 -294 6018 5908 21 0 0 0 chr3 124508481 124508502 -103016076 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 124509322 124509343 -103015235 + AT_rich Low_complexity Low_complexity 1 21 0 1583 218 22 14 chr3 124509423 124509785 -103014793 - MLT1A1 LTR MaLR 0 365 1 582 309 64 10 chr3 124509920 124510124 -103014454 - MIR SINE MIR -44 218 4 330 26 0 0 chr3 124510654 124510693 -103013885 + (CA)n Simple_repeat Simple_repeat 1 39 0 227 220 17 34 chr3 124510982 124511041 -103013537 + HAL1 LINE L1 347 404 -2103 1374 283 66 40 chr3 124511214 124511961 -103012617 + HAL1 LINE L1 607 1372 -1135 260 309 157 19 chr3 124512138 124512400 -103012178 + HAL1 LINE L1 1619 1916 -591 318 237 213 24 chr3 124512456 124512625 -103011953 + HAL1 LINE L1 2014 2214 -293 1686 231 78 12 chr3 124513090 124513576 -103011002 - MLT2B1 LTR ERVL -1 519 2 1896 164 0 0 chr3 124513865 124514163 -103010415 - AluJo SINE Alu -14 298 1 282 211 13 13 chr3 124514586 124514662 -103009916 - L1MA2 LINE L1 -4 6300 6225 201 154 0 0 chr3 124514743 124514782 -103009796 + (TTA)n Simple_repeat Simple_repeat 1 39 0 24 0 0 0 chr3 124515611 124515635 -103008943 + AT_rich Low_complexity Low_complexity 1 24 0 255 316 0 21 chr3 124515635 124515730 -103008848 + L1MC4 LINE L1 6613 6705 -1337 226 327 73 9 chr3 124515867 124515977 -103008601 - MIR SINE MIR 0 262 146 236 121 44 88 chr3 124516880 124516971 -103007607 + (TTA)n Simple_repeat Simple_repeat 2 88 0 1423 218 42 3 chr3 124517190 124517502 -103007076 + MLT1C LTR MaLR 3 326 -141 2437 187 18 0 chr3 124517508 124517952 -103006626 + MER66A LTR ERV1 27 478 0 598 225 43 0 chr3 124517955 124518093 -103006485 + MLT1C LTR MaLR 324 467 0 582 261 199 47 chr3 124522336 124522739 -103001839 + LTR16B LTR ERVL 1 464 0 2018 120 0 32 chr3 124522784 124523092 -103001486 - AluSc SINE Alu -11 298 1 283 377 37 81 chr3 124523587 124523860 -103000718 - L2 LINE L2 -20 3252 2992 1347 253 16 67 chr3 124523915 124524289 -103000289 + LTR16A LTR ERVL 33 384 -66 1821 146 14 88 chr3 124524289 124524707 -102999871 + L1MA9 LINE L1 5924 6310 -2 1347 253 16 67 chr3 124524707 124524763 -102999815 + LTR16A LTR ERVL 384 441 -9 247 239 0 30 chr3 124524929 124524996 -102999582 + (CATATA)n Simple_repeat Simple_repeat 6 70 0 2124 121 3 0 chr3 124525694 124525992 -102998586 + AluSx SINE Alu 1 299 -13 267 319 35 35 chr3 124528473 124528586 -102995992 + MIR3 SINE MIR 83 195 -13 1874 224 48 36 chr3 124528614 124529241 -102995337 - MER21B LTR ERV1 -81 782 98 371 286 11 29 chr3 124529210 124529360 -102995218 - MER21B LTR ERV1 -403 202 17 * 2126 210 19 31 chr3 124529466 124529946 -102994632 - MER21B-int LTR ERV1 -58 4133 3660 2849 223 35 39 chr3 124529954 124530666 -102993912 - MER72 LTR ERV1 -9 713 5 6397 226 42 25 chr3 124530666 124532135 -102992443 - MER21B-int LTR ERV1 -523 3668 2175 1154 234 16 69 chr3 124532165 124532468 -102992110 - MER21B-int LTR ERV1 -2088 2103 1817 311 305 24 0 chr3 124532469 124532551 -102992027 - MER21B LTR ERV1 -457 406 323 393 200 0 0 chr3 124532711 124532776 -102991802 - MER21B LTR ERV1 -780 83 19 23 33 0 0 chr3 124532828 124532858 -102991720 + AT_rich Low_complexity Low_complexity 1 30 0 1793 213 3 3 chr3 124532995 124533357 -102991221 - MLT1A1 LTR MaLR -2 363 2 663 299 60 4 chr3 124533411 124533645 -102990933 + MIR SINE MIR 15 261 -1 25 31 0 0 chr3 124533645 124533677 -102990901 + AT_rich Low_complexity Low_complexity 1 32 0 425 325 28 8 chr3 124533688 124533859 -102990719 - MIR SINE MIR -65 143 5 302 323 57 32 chr3 124534011 124534169 -102990409 - MIR3 SINE MIR -28 180 19 1813 170 41 3 chr3 124534399 124534741 -102989837 - L1MC1 LINE L1 -1 6332 5978 2113 100 0 22 chr3 124535124 124535435 -102989143 + AluSx SINE Alu 1 304 -8 2057 138 6 0 chr3 124535485 124535796 -102988782 - AluSq SINE Alu 0 313 1 24 53 0 0 chr3 124535972 124536010 -102988568 + AT_rich Low_complexity Low_complexity 1 38 0 2218 181 26 37 chr3 124536022 124536733 -102987845 - L1M2 LINE L1 -686 5862 5148 5082 219 74 33 chr3 124536733 124538564 -102986014 - L1M2 LINE L1 -2343 4039 2133 963 210 0 36 chr3 124538725 124538920 -102985658 - L1MC3 LINE L1 -499 7286 7099 2207 95 0 3 chr3 124539380 124539702 -102984876 - AluSx SINE Alu 0 312 1 2516 264 52 38 chr3 124539713 124540822 -102983756 - L1ME3A LINE L1 0 6170 5060 209 196 22 0 chr3 124540855 124540901 -102983677 + CT-rich Low_complexity Low_complexity 2 48 0 28 0 0 0 chr3 124540922 124540950 -102983628 + AT_rich Low_complexity Low_complexity 1 28 0 225 343 64 6 chr3 124541196 124541368 -102983210 - L1ME3A LINE L1 -1835 4311 4130 1929 149 65 15 chr3 124541600 124541963 -102982615 + MLT2A2 LTR ERVL 1 309 -144 5325 128 8 40 chr3 124541969 124543304 -102981274 - L1PA10 LINE L1 -11 6157 4824 238 317 17 0 chr3 124543615 124543675 -102980903 - L2 LINE L2 -8 3264 3204 246 253 113 73 chr3 124543864 124544014 -102980564 + L2 LINE L2 2604 2759 -555 227 326 51 62 chr3 124544693 124544871 -102979707 - MER5B DNA MER1_type -1 177 2 183 42 0 0 chr3 124547748 124547772 -102976806 + (TTATA)n Simple_repeat Simple_repeat 5 28 0 67 14 0 0 chr3 124548511 124548585 -102975993 + AT_rich Low_complexity Low_complexity 1 74 0 554 311 37 21 chr3 124549185 124549426 -102975152 + MIR SINE MIR 8 252 -10 29 28 0 0 chr3 124550087 124550123 -102974455 + AT_rich Low_complexity Low_complexity 1 36 0 420 394 66 11 chr3 124550782 124551307 -102973271 - L2 LINE L2 -199 3073 2523 807 246 0 33 chr3 124551987 124552198 -102972380 + MER3 DNA MER1_type 2 205 -4 1249 264 87 50 chr3 124552620 124553139 -102971439 - MLT1E LTR MaLR -29 564 27 885 201 55 35 chr3 124553253 124553507 -102971071 + L1MA7 LINE L1 6017 6275 -16 2412 54 6 22 chr3 124553905 124554219 -102970359 + AluY SINE Alu 1 309 -2 2102 113 0 72 chr3 124554280 124554643 -102969935 + MER1B DNA MER1_type 1 337 0 271 317 106 72 chr3 124555173 124555381 -102969197 + L2 LINE L2 2102 2316 -998 22 35 0 0 chr3 124555761 124555790 -102968788 + AT_rich Low_complexity Low_complexity 1 29 0 249 321 18 36 chr3 124556668 124556836 -102967742 + LTR40c LTR ERVL 149 313 -152 1658 130 154 102 chr3 124557223 124557607 -102966971 - MER4A LTR ERV1 0 664 261 582 122 10 10 chr3 124557607 124557705 -102966873 - MER4A LTR ERV1 -566 98 1 230 348 20 54 chr3 124558470 124558674 -102965904 - L2 LINE L2 -474 2840 2644 1505 150 7 7 chr3 124559086 124559372 -102965206 + L1MA4 LINE L1 6015 6300 0 2287 96 3 0 chr3 124559405 124559697 -102964881 - AluSp SINE Alu -20 293 1 215 312 39 13 chr3 124560385 124560462 -102964116 + MIR SINE MIR 19 97 -111 401 336 34 20 chr3 124561222 124561368 -102963210 + MIR SINE MIR 2 149 -113 27 0 0 0 chr3 124561985 124562012 -102962566 + AT_rich Low_complexity Low_complexity 1 27 0 623 288 40 14 chr3 124562282 124562504 -102962074 + LTR16B LTR ERVL 96 323 -141 1671 233 67 6 chr3 124562504 124562865 -102961713 - MSTD LTR MaLR -2 394 12 370 326 38 8 chr3 124562874 124563006 -102961572 + LTR16B LTR ERVL 315 450 -14 181 243 0 0 chr3 124564889 124564926 -102959652 - L2 LINE L2 -1053 2261 2225 467 313 65 75 chr3 124564947 124565318 -102959260 - L2 LINE L2 0 3313 2947 1220 329 78 61 chr3 124565378 124566647 -102957931 - HERVL LTR ERVL -323 5331 4083 223 133 17 17 chr3 124566958 124567018 -102957560 + (TATAA)n Simple_repeat Simple_repeat 5 64 0 23 0 0 0 chr3 124567077 124567100 -102957478 + AT_rich Low_complexity Low_complexity 1 23 0 483 377 38 14 chr3 124567142 124567434 -102957144 - HERVL LTR ERVL -2078 3686 3388 597 235 34 20 chr3 124567444 124567593 -102956985 + MER92C LTR ERV1 1 151 -403 1505 211 22 19 chr3 124568183 124568543 -102956035 - MLT1A1 LTR MaLR -4 361 1 204 182 0 0 chr3 124568877 124568921 -102955657 + (TA)n Simple_repeat Simple_repeat 1 44 0 358 258 89 47 chr3 124568979 124569192 -102955386 + HAL1b LINE L1 745 966 -382 500 30 15 0 chr3 124570928 124570994 -102953584 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 1817 136 9 103 chr3 124571403 124571859 -102952719 - L1MA9 LINE L1 0 6312 5900 22 0 0 0 chr3 124571962 124571984 -102952594 + AT_rich Low_complexity Low_complexity 1 22 0 948 55 79 0 chr3 124573616 124573743 -102950835 + MER85 DNA T2_type 1 137 -2 221 197 16 0 chr3 124573795 124573856 -102950722 + (TA)n Simple_repeat Simple_repeat 1 62 0 2052 92 39 3 chr3 124573857 124574139 -102950439 - AluSg SINE Alu -18 292 1 21 0 0 0 chr3 124574378 124574399 -102950179 + AT_rich Low_complexity Low_complexity 1 21 0 268 319 230 5 chr3 124574801 124575014 -102949564 + MIR SINE MIR 2 262 0 22 0 0 0 chr3 124575482 124575504 -102949074 + AT_rich Low_complexity Low_complexity 1 22 0 233 246 0 14 chr3 124576678 124576747 -102947831 + (TA)n Simple_repeat Simple_repeat 2 69 0 26 23 0 23 chr3 124577912 124577933 -102946645 + AT_rich Low_complexity Low_complexity 1 21 -22 1963 130 25 0 chr3 124577933 124578218 -102946360 - AluSx SINE Alu -20 292 1 26 23 0 23 chr3 124578218 124578240 -102946338 + AT_rich Low_complexity Low_complexity 21 43 0 302 285 146 19 chr3 124578360 124578518 -102946060 - MIR SINE MIR -32 230 53 28 29 0 0 chr3 124578659 124578694 -102945884 + AT_rich Low_complexity Low_complexity 1 35 0 480 200 23 23 chr3 124579095 124579225 -102945353 - L1M LINE L1 -2402 5383 5254 1991 150 121 16 chr3 124579228 124579615 -102944963 - MSTA LTR MaLR 0 428 1 3501 154 16 15 chr3 124579615 124580226 -102944352 - MSTA-int LTR MaLR 0 1580 969 1157 189 126 22 chr3 124580233 124580503 -102944075 - MSTA LTR MaLR -130 298 1 6394 263 56 27 chr3 124580503 124583193 -102941385 - L1M4 LINE L1 -891 5255 2488 1022 223 29 95 chr3 124583191 124583872 -102940706 - L1MCb LINE L1 -5271 774 47 * 249 262 49 0 chr3 124583987 124584048 -102940530 - L1MCb LINE L1 -6360 204 141 243 178 110 68 chr3 124584038 124584103 -102940475 - L1M4 LINE L1 -1676 4470 4409 * 1315 159 4 17 chr3 124584103 124584336 -102940242 - L1MC1 LINE L1 0 6333 6104 243 178 110 68 chr3 124584336 124584416 -102940162 - L1M4 LINE L1 -1737 4409 4319 200 232 56 155 chr3 124584546 124584688 -102939890 - MIR SINE MIR -51 211 84 25 31 0 0 chr3 124585562 124585594 -102938984 + AT_rich Low_complexity Low_complexity 1 32 0 23 33 0 0 chr3 124586104 124586134 -102938444 + AT_rich Low_complexity Low_complexity 1 30 0 225 196 0 0 chr3 124586981 124587032 -102937546 + A-rich Low_complexity Low_complexity 1 51 0 859 240 65 18 chr3 124587182 124587582 -102936996 + L1M4 LINE L1 2911 3329 -2817 282 56 0 0 chr3 124587703 124587739 -102936839 + (CA)n Simple_repeat Simple_repeat 1 36 0 219 259 0 0 chr3 124588093 124588151 -102936427 + A-rich Low_complexity Low_complexity 1 58 0 205 239 45 0 chr3 124588158 124588225 -102936353 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 27 0 0 0 chr3 124588369 124588396 -102936182 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr3 124588483 124588512 -102936066 + AT_rich Low_complexity Low_complexity 1 29 0 1984 156 95 14 chr3 124588534 124588965 -102935613 - L1MA3 LINE L1 -46 6259 5794 279 211 53 0 chr3 124589235 124589349 -102935229 + (TA)n Simple_repeat Simple_repeat 1 120 0 271 258 93 71 chr3 124589435 124590082 -102934496 + L1M4 LINE L1 2786 3446 -2700 7112 237 25 3 chr3 124590350 124591768 -102932810 + L1PA13 LINE L1 167 1615 -5172 346 194 28 0 chr3 124591773 124591845 -102932733 + L1PA13 LINE L1 1721 1794 -4993 6692 209 30 3 chr3 124591849 124593281 -102931297 + L1PA13 LINE L1 2393 3862 -2935 12545 49 2 1 chr3 124593287 124595619 -102928959 - L1PA5 LINE L1 0 6154 3821 10735 104 7 209 chr3 124595617 124597369 -102927209 + L1P LINE L1 2774 3713 -2433 * 2292 87 7 0 chr3 124597369 124597668 -102926910 + AluSc SINE Alu 6 306 -3 10735 104 7 209 chr3 124597668 124598801 -102925777 + L1P LINE L1 3713 5074 -1072 670 210 63 0 chr3 124599040 124599183 -102925395 + MLT1C LTR MaLR 56 207 -260 482 279 62 40 chr3 124599198 124599432 -102925146 - MER102b DNA MER1_type -1096 332 90 2310 81 0 10 chr3 124599432 124599741 -102924837 + AluSq SINE Alu 8 313 0 482 279 62 40 chr3 124599741 124599782 -102924796 - MER102b DNA MER1_type -1338 90 51 25 51 0 0 chr3 124599888 124599927 -102924651 + AT_rich Low_complexity Low_complexity 1 39 0 32 0 0 0 chr3 124600555 124600587 -102923991 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr3 124603898 124603926 -102920652 + AT_rich Low_complexity Low_complexity 1 28 0 25 51 0 0 chr3 124604458 124604497 -102920081 + AT_rich Low_complexity Low_complexity 1 39 0 326 240 256 8 chr3 124604889 124605014 -102919564 + L2 LINE L2 3158 3313 0 220 326 134 76 chr3 124605013 124605289 -102919289 + L2 LINE L2 2225 2516 -798 * 5569 192 32 31 chr3 124605392 124606708 -102917870 - L1 LINE L1 -1104 5042 3726 4727 179 13 8 chr3 124606715 124607799 -102916779 + L1MB1 LINE L1 5079 6168 0 206 260 94 94 chr3 124608037 124608218 -102916360 + L2 LINE L2 1783 1963 -1351 21 71 0 0 chr3 124608321 124608363 -102916215 + AT_rich Low_complexity Low_complexity 1 42 0 2053 131 0 0 chr3 124608540 124608837 -102915741 - AluSg SINE Alu -13 297 1 21 71 0 0 chr3 124609131 124609173 -102915405 + AT_rich Low_complexity Low_complexity 1 42 0 194 268 182 45 chr3 124609178 124609376 -102915202 + L2 LINE L2 3027 3251 -62 217 238 0 0 chr3 124609409 124609451 -102915127 + A-rich Low_complexity Low_complexity 5 46 0 22 0 0 0 chr3 124609799 124609821 -102914757 + AT_rich Low_complexity Low_complexity 1 22 0 6992 55 0 0 chr3 124609843 124610982 -102913596 - L1PA5 LINE L1 -7 6147 5001 2591 38 0 13 chr3 124611665 124611978 -102912600 - AluY SINE Alu -2 309 1 190 361 46 23 chr3 124612687 124612817 -102911761 - L2 LINE L2 -1 3271 3139 2147 124 0 9 chr3 124612944 124613259 -102911319 - AluSq SINE Alu -1 312 1 410 303 77 59 chr3 124613309 124613712 -102910866 - L2 LINE L2 0 3313 2824 581 216 0 0 chr3 124614051 124614162 -102910416 + MER45A DNA AcHobo 68 178 0 519 347 75 31 chr3 124614336 124614947 -102909631 + L1M4 LINE L1 4677 5314 -832 287 321 79 29 chr3 124615233 124615373 -102909205 - L2 LINE L2 -1 3271 3125 40 49 0 0 chr3 124615663 124615724 -102908854 + AT_rich Low_complexity Low_complexity 1 61 0 291 299 104 52 chr3 124615738 124615892 -102908686 - MIR SINE MIR -76 186 25 1326 184 58 83 chr3 124616026 124616461 -102908117 + L1MA9 LINE L1 5875 6298 -14 23 54 0 0 chr3 124616461 124616498 -102908080 + AT_rich Low_complexity Low_complexity 1 37 0 335 308 217 5 chr3 124616815 124617013 -102907565 - L2 LINE L2 0 3313 3074 250 280 26 0 chr3 124617549 124617627 -102906951 + MIR SINE MIR 53 131 -77 1286 208 139 30 chr3 124617879 124618283 -102906295 - MER39 LTR ERV1 -3 704 257 236 380 28 9 chr3 124618728 124618836 -102905742 + MIR3 SINE MIR 15 124 -84 413 138 12 0 chr3 124618843 124618923 -102905655 + CT-rich Low_complexity Low_complexity 1 81 0 26 0 0 0 chr3 124621114 124621140 -102903438 + AT_rich Low_complexity Low_complexity 1 26 0 1179 364 29 0 chr3 124621183 124621628 -102902950 + MER45C DNA AcHobo 2 459 -494 203 229 257 37 chr3 124622492 124622601 -102901977 + L2 LINE L2 2397 2529 -785 193 399 36 16 chr3 124622633 124622826 -102901752 + L2 LINE L2 2764 2960 -354 201 423 47 23 chr3 124623100 124623315 -102901263 + L2 LINE L2 2826 3045 -227 376 245 172 60 chr3 124623984 124624135 -102900443 - MLT1J LTR MaLR -335 176 9 650 275 114 13 chr3 124624211 124624447 -102900131 + MIR SINE MIR 3 262 0 2259 97 0 0 chr3 124625518 124625818 -102898760 - AluSg SINE Alu -10 300 1 219 88 0 0 chr3 124626036 124626070 -102898508 + (A)n Simple_repeat Simple_repeat 1 34 0 247 49 49 0 chr3 124627032 124627073 -102897505 + (TA)n Simple_repeat Simple_repeat 2 44 0 1244 246 59 17 chr3 124627637 124627991 -102896587 - MLT1A2 LTR MaLR -4 370 2 495 267 17 81 chr3 124628169 124628405 -102896173 - MLT1D LTR MaLR -284 221 1 210 37 0 0 chr3 124629452 124629479 -102895099 + (CA)n Simple_repeat Simple_repeat 1 27 0 4953 168 36 15 chr3 124629610 124630545 -102894033 + Tigger1 DNA MER2_type 1 955 -1463 781 77 39 13 chr3 124630562 124630717 -102893861 + C-rich Low_complexity Low_complexity 3 161 0 195 200 29 14 chr3 124630722 124630792 -102893786 + CT-rich Low_complexity Low_complexity 2 72 0 * 218 32 32 0 chr3 124630788 124630819 -102893759 + (TC)n Simple_repeat Simple_repeat 1 32 0 599 239 0 0 chr3 124630821 124630938 -102893640 - FLAM_A SINE Alu -18 124 8 2567 151 2 7 chr3 124630948 124631366 -102893212 + Tigger1 DNA MER2_type 970 1385 -1033 3426 145 50 10 chr3 124631369 124631990 -102892588 - L1MA4 LINE L1 -7 6293 5648 235 152 0 0 chr3 124631994 124632040 -102892538 + LTR66 LTR ERVL 394 439 -171 247 264 23 0 chr3 124632052 124632139 -102892439 - L1MC4 LINE L1 -1339 6703 6615 955 170 36 0 chr3 124632161 124632360 -102892218 - L1MA4 LINE L1 -644 5656 5447 444 189 116 21 chr3 124632360 124632455 -102892123 - Tigger1 DNA MER2_type -2314 104 1 1249 247 59 84 chr3 124632471 124633386 -102891192 - L1MEc LINE L1 -3045 3170 2279 402 235 15 59 chr3 124633391 124633527 -102891051 - L1MEc LINE L1 -4145 2251 2122 209 134 60 30 chr3 124633620 124633687 -102890891 + (TATAA)n Simple_repeat Simple_repeat 5 73 0 443 224 117 37 chr3 124633728 124633942 -102890636 - L1MC5 LINE L1 -482 7479 7249 470 337 59 74 chr3 124634006 124634765 -102889813 + L1 LINE L1 4227 4974 -1172 199 333 151 32 chr3 124635858 124635984 -102888594 + MIR3 SINE MIR 37 177 -31 198 347 82 0 chr3 124637902 124638000 -102886578 - MIR SINE MIR -30 232 127 409 340 132 14 chr3 124638321 124638609 -102885969 + LTR33A LTR ERVL 44 365 -158 6898 223 88 42 chr3 124638609 124639036 -102885542 - L1M4 LINE L1 -938 5706 5300 1921 130 16 0 chr3 124639036 124639343 -102885235 - AluSx SINE Alu 0 312 1 6898 223 88 42 chr3 124639343 124641449 -102883129 - L1M4 LINE L1 -1344 5300 3055 802 210 46 45 chr3 124641453 124641744 -102882834 - MLT1A1 LTR MaLR 0 365 4 1425 257 92 51 chr3 124641749 124642024 -102882554 - L1M4 LINE L1 -3592 3052 2790 2034 135 0 29 chr3 124642024 124642336 -102882242 - AluSx SINE Alu -9 303 1 1425 257 92 51 chr3 124642336 124642490 -102882088 - L1M4 LINE L1 -3854 2790 2644 1928 172 0 0 chr3 124642490 124642786 -102881792 - AluSx SINE Alu -16 296 1 1425 257 92 51 chr3 124642786 124645169 -102879409 - L1M4 LINE L1 -4000 2644 11 1731 186 0 0 chr3 124645343 124645623 -102878955 + AluJb SINE Alu 1 280 -32 995 205 57 0 chr3 124645640 124645869 -102878709 - MER33 DNA MER1_type -82 242 1 1006 263 5 0 chr3 124646002 124646219 -102878359 + MER58A DNA MER1_type 7 224 0 42 20 0 0 chr3 124646235 124646284 -102878294 + AT_rich Low_complexity Low_complexity 1 49 0 229 154 26 26 chr3 124646290 124646407 -102878171 + (TTAA)n Simple_repeat Simple_repeat 1 117 0 40 21 0 0 chr3 124646407 124646454 -102878124 + AT_rich Low_complexity Low_complexity 1 47 0 266 198 26 26 chr3 124646896 124647052 -102877526 + (TTTA)n Simple_repeat Simple_repeat 1 156 0 24 0 0 0 chr3 124647384 124647408 -102877170 + AT_rich Low_complexity Low_complexity 1 24 0 1856 151 51 38 chr3 124648436 124648806 -102875772 - THE1C LTR MaLR 0 375 1 8354 149 82 6 chr3 124648806 124650273 -102874305 - THE1C-int LTR MaLR 0 1580 2 1744 173 52 25 chr3 124650279 124650644 -102873934 - THE1C LTR MaLR 0 375 1 1202 321 38 6 chr3 124650780 124651257 -102873321 + L1MCc LINE L1 20 511 -5912 913 276 72 53 chr3 124651546 124652089 -102872489 + L1MCc LINE L1 981 1533 -4890 * 940 244 102 21 chr3 124652075 124652603 -102871975 + L1MCc LINE L1 3736 4306 -2635 1109 284 39 14 chr3 124652666 124653230 -102871348 - L1M4 LINE L1 -1202 4944 4367 * 3044 200 37 34 chr3 124653223 124653787 -102870791 - L1MA10 LINE L1 0 6334 5766 330 87 0 0 chr3 124653787 124653833 -102870745 + (CA)n Simple_repeat Simple_repeat 2 47 0 3044 200 37 34 chr3 124653833 124653979 -102870599 - L1MA10 LINE L1 -568 5766 5622 888 205 5 0 chr3 124653990 124654175 -102870403 + L1M2 LINE L1 5254 5439 -873 1433 191 10 49 chr3 124654178 124654466 -102870112 + AluJo SINE Alu 1 277 -35 204 272 66 52 chr3 124654624 124654760 -102869818 + L2 LINE L2 1988 2125 -1189 384 288 109 22 chr3 124654977 124655244 -102869334 - L1MEd LINE L1 -5183 936 647 1905 211 97 2 chr3 124655261 124655778 -102868800 - Charlie1 DNA MER1_type -339 2422 1857 977 75 75 0 chr3 124657732 124657866 -102866712 + HERVK14 LTR ERVK 2033 2176 -3769 217 14 0 139 chr3 124658432 124658504 -102866074 + (TAAG)n Simple_repeat Simple_repeat 1 62 0 245 169 26 0 chr3 124658514 124658591 -102865987 + (TAGA)n Simple_repeat Simple_repeat 2 80 0 338 117 13 117 chr3 124658650 124658727 -102865851 + HERVK14 LTR ERVK 150 218 -7025 495 113 100 0 chr3 124658883 124658963 -102865615 + HERVK14 LTR ERVK 4274 4361 -1584 1520 98 17 12 chr3 124658963 124659370 -102865208 + HERVK14 LTR ERVK 5049 5527 -418 427 272 40 15 chr3 124660230 124660370 -102864208 - MIR SINE MIR -60 148 4 2208 108 13 0 chr3 124660690 124660997 -102863581 - AluSq SINE Alu 0 313 3 673 244 101 4 chr3 124661454 124661692 -102862886 - L1M4 LINE L1 -1339 4807 4547 299 158 126 16 chr3 124661697 124661824 -102862754 - L1M4 LINE L1 -1704 4442 4302 22 0 0 0 chr3 124661892 124661914 -102862664 + AT_rich Low_complexity Low_complexity 1 22 0 1954 99 21 25 chr3 124661914 124662197 -102862381 - AluSx SINE Alu -30 282 1 348 156 164 0 chr3 124662604 124662732 -102861846 + AluSq/x SINE Alu 1 149 -153 286 228 137 81 chr3 124662878 124663146 -102861432 + L1MC4 LINE L1 7000 7287 -755 2186 76 4 0 chr3 124663168 124663444 -102861134 - AluY SINE Alu -4 307 31 2344 109 41 7 chr3 124663444 124663820 -102860758 - LTR12 LTR ERV1 0 714 366 3465 97 103 118 chr3 124663841 124664678 -102859900 - LTR12 LTR ERV1 -2 824 1 269 29 0 0 chr3 124664678 124664712 -102859866 - AluY SINE Alu -267 34 1 320 228 69 0 chr3 124664841 124664942 -102859636 + L1MC5 LINE L1 7269 7376 -585 1820 213 19 38 chr3 124665704 124666131 -102858447 - MLT1D LTR MaLR 0 505 87 1061 270 63 25 chr3 124666287 124666854 -102857724 - L1M4 LINE L1 -765 5381 4793 1749 274 103 14 chr3 124666878 124667547 -102857031 + L1MC4 LINE L1 7327 8040 -2 322 318 101 7 chr3 124668011 124668159 -102856419 + MIR SINE MIR 12 173 -89 1671 174 55 78 chr3 124668161 124668558 -102856020 + MLT1B LTR MaLR 3 390 0 237 132 0 0 chr3 124668877 124668915 -102855663 + (CATA)n Simple_repeat Simple_repeat 1 38 0 236 195 58 11 chr3 124668926 124669013 -102855565 + (TATAA)n Simple_repeat Simple_repeat 5 95 0 273 29 0 0 chr3 124669359 124669393 -102855185 + (TG)n Simple_repeat Simple_repeat 2 35 0 1943 125 4 0 chr3 124670642 124670945 -102853633 + AluSg SINE Alu 1 304 0 1722 174 21 0 chr3 124671126 124671413 -102853165 - AluJb SINE Alu -19 293 1 33 73 0 0 chr3 124672181 124672249 -102852329 + AT_rich Low_complexity Low_complexity 1 68 0 1943 140 0 7 chr3 124672400 124672721 -102851857 + AluSq SINE Alu 1 319 0 276 299 13 13 chr3 124672811 124672888 -102851690 - MIR SINE MIR -156 106 30 437 345 36 23 chr3 124672976 124673196 -102851382 + MIR SINE MIR 12 234 -28 21 36 0 0 chr3 124673224 124673252 -102851326 + AT_rich Low_complexity Low_complexity 1 28 0 249 346 71 24 chr3 124674513 124674640 -102849938 + MIR3 SINE MIR 37 169 -39 2156 133 0 16 chr3 124674989 124675306 -102849272 - AluSx SINE Alu 0 312 1 2593 29 12 3 chr3 124675346 124675691 -102848887 + L1P LINE L1 5033 5380 -766 188 285 173 89 chr3 124675814 124675993 -102848585 + MIR SINE MIR 65 258 -4 301 313 76 13 chr3 124675997 124676167 -102848411 + MIR SINE MIR 10 185 -53 348 253 113 59 chr3 124676777 124676963 -102847615 - L2 LINE L2 -1 3312 3117 227 280 122 19 chr3 124677021 124677128 -102847450 + MIR SINE MIR 143 260 -2 186 372 26 35 chr3 124677309 124677422 -102847156 - L2 LINE L2 -194 3078 2967 369 0 0 0 chr3 124677683 124677724 -102846854 + (CA)n Simple_repeat Simple_repeat 2 42 0 254 355 46 7 chr3 124677727 124677879 -102846699 - MLT1L LTR MaLR -332 283 126 282 371 107 6 chr3 124680541 124680700 -102843878 - MIR SINE MIR -78 184 10 640 145 26 0 chr3 124680800 124680917 -102843661 + L1PA13 LINE L1 6043 6162 -1 319 322 53 7 chr3 124680924 124681076 -102843502 - MIR SINE MIR -10 252 94 264 354 25 19 chr3 124682579 124682737 -102841841 + L2 LINE L2 2235 2393 -921 4988 175 40 32 chr3 124682753 124682968 -102841610 - L1PA16 LINE L1 -9 6157 5945 1851 147 76 20 chr3 124682968 124683323 -102841255 - THE1C LTR MaLR 0 375 1 4988 175 40 32 chr3 124683323 124684832 -102839746 - L1PA16 LINE L1 -221 5945 4398 351 0 0 0 chr3 124684832 124684871 -102839707 + (TG)n Simple_repeat Simple_repeat 2 40 0 4988 175 40 32 chr3 124684871 124684958 -102839620 - L1PA16 LINE L1 -1768 4398 4313 868 385 54 9 chr3 124684968 124685508 -102839070 + L2 LINE L2 2414 2977 -337 30 77 0 0 chr3 124685518 124685583 -102838995 + AT_rich Low_complexity Low_complexity 1 65 0 1665 273 47 41 chr3 124685782 124686442 -102838136 - L1ME1 LINE L1 -116 6050 5387 24 32 0 0 chr3 124686800 124686831 -102837747 + AT_rich Low_complexity Low_complexity 1 31 0 848 277 88 51 chr3 124688765 124689140 -102835438 - MLT1I LTR MaLR -19 390 2 418 237 72 97 chr3 124690232 124690510 -102834068 + L1MC4a LINE L1 5823 6093 -1715 192 40 0 0 chr3 124690526 124690551 -102834027 + (CA)n Simple_repeat Simple_repeat 2 26 0 1955 171 16 39 chr3 124692237 124692622 -102831956 - MLT1B LTR MaLR 0 390 15 218 450 0 0 chr3 124693239 124693368 -102831210 - L2 LINE L2 -8 3264 3136 691 235 50 6 chr3 124693901 124694080 -102830498 + MER5A DNA MER1_type 1 187 -2 310 294 81 12 chr3 124694101 124694261 -102830317 + MARNA DNA Mariner 245 415 -171 2089 120 0 3 chr3 124694542 124694849 -102829729 + AluSx SINE Alu 1 306 0 447 51 115 26 chr3 124694873 124694951 -102829627 + L1PA10 LINE L1 6082 6166 -2 762 271 99 51 chr3 124696548 124696840 -102827738 + L2 LINE L2 2308 2613 -701 582 311 93 29 chr3 124696974 124697286 -102827292 + L2 LINE L2 2945 3276 -37 226 172 47 0 chr3 124697558 124697622 -102826956 + (TTATA)n Simple_repeat Simple_repeat 3 69 0 264 280 206 0 chr3 124698735 124698842 -102825736 + MIR SINE MIR 131 259 -3 223 331 135 47 chr3 124699562 124699710 -102824868 - L2 LINE L2 -8 3264 3104 797 119 6 24 chr3 124700446 124700614 -102823964 + (GGAA)n Simple_repeat Simple_repeat 4 168 0 377 343 79 11 chr3 124701225 124701403 -102823175 - MIR SINE MIR -50 212 23 683 164 94 12 chr3 124701541 124701712 -102822866 + MER53 DNA DNA 4 188 -1 304 232 342 16 chr3 124702505 124702695 -102821883 + MIR SINE MIR 8 259 -3 943 243 131 29 chr3 124703193 124703654 -102820924 + MLT1F1 LTR MaLR 3 556 -11 6191 22 0 0 chr3 124704124 124704837 -102819741 + L1PA3 LINE L1 5440 6152 -3 1966 104 62 23 chr3 124705409 124705716 -102818862 - THE1B LTR MaLR -45 319 1 24 32 0 0 chr3 124707221 124707252 -102817326 + AT_rich Low_complexity Low_complexity 1 31 0 264 30 0 0 chr3 124707252 124707285 -102817293 + (TG)n Simple_repeat Simple_repeat 2 34 0 377 345 38 47 chr3 124709945 124710180 -102814398 - MIR SINE MIR -18 244 12 395 258 66 26 chr3 124710266 124710417 -102814161 + LTR65 LTR ERV1 1 157 -512 281 313 35 25 chr3 124710551 124710770 -102813808 + LTR65 LTR ERV1 398 662 0 2608 40 3 0 chr3 124711051 124711355 -102813223 - AluY SINE Alu -6 305 1 327 279 97 18 chr3 124711393 124711558 -102813020 + L1ME4a LINE L1 5671 5848 -273 1590 245 121 25 chr3 124712635 124712967 -102811611 + L1MC4 LINE L1 6532 6831 -1211 1761 135 46 92 chr3 124712967 124713360 -102811218 - THE1C LTR MaLR 0 375 1 1590 245 121 25 chr3 124713360 124713672 -102810906 + L1MC4 LINE L1 6831 7238 -804 4049 129 9 34 chr3 124713673 124714407 -102810171 + L1P LINE L1 4102 4817 -1329 202 306 0 31 chr3 124714654 124714752 -102809826 + CT-rich Low_complexity Low_complexity 1 95 0 354 80 0 0 chr3 124714922 124714972 -102809606 + (TA)n Simple_repeat Simple_repeat 2 51 0 244 296 57 45 chr3 124715127 124715215 -102809363 + MIR SINE MIR 49 137 -71 202 143 24 0 chr3 124716355 124716397 -102808181 + (AATAG)n Simple_repeat Simple_repeat 2 44 0 209 389 46 9 chr3 124716477 124716585 -102807993 + L2 LINE L2 3146 3257 -15 2192 156 55 33 chr3 124716681 124717070 -102807508 - L1PA12 LINE L1 -4282 3302 2923 1511 193 133 18 chr3 124717070 124717454 -102807124 + MSTA LTR MaLR 1 428 0 8595 155 30 32 chr3 124717456 124719035 -102805543 + THE1C-int LTR MaLR 3 1578 -2 1630 135 67 57 chr3 124719037 124719408 -102805170 + THE1C LTR MaLR 1 375 0 2192 156 55 33 chr3 124719408 124719614 -102804964 - L1PA12 LINE L1 -4661 2923 2688 4281 160 22 2 chr3 124719616 124720929 -102803649 + L1PA14 LINE L1 4615 5952 -209 2127 125 48 20 chr3 124720929 124721281 -102803297 - THE1B LTR MaLR 0 364 3 10657 110 9 8 chr3 124721283 124722861 -102801717 - THE1B-int LTR MaLR 0 1580 1 1343 160 42 52 chr3 124722863 124723169 -102801409 - THE1B LTR MaLR -2 362 60 1282 323 78 42 chr3 124723805 124724773 -102799805 - L2 LINE L2 -559 2755 1753 324 70 0 0 chr3 124724823 124724866 -102799712 + (TG)n Simple_repeat Simple_repeat 2 44 0 2418 221 91 45 chr3 124725201 124725902 -102798676 - L1ME1 LINE L1 -1 6165 5401 1976 101 15 0 chr3 124725902 124726170 -102798408 - AluSg SINE Alu -8 302 31 2418 221 91 45 chr3 124726170 124726569 -102798009 - L1ME1 LINE L1 -765 5401 5022 1633 297 69 55 chr3 124726622 124726851 -102797727 - HERVL40 LTR ERVL -4015 1515 1291 4134 176 22 53 chr3 124726851 124727836 -102796742 + LTR5 LTR ERVK 1 955 -14 1633 297 69 55 chr3 124727836 124728542 -102796036 - HERVL40 LTR ERVL -4239 1291 566 1162 269 51 46 chr3 124728752 124729165 -102795413 - HERVL40 LTR ERVL -5115 415 1 1264 258 85 23 chr3 124729166 124729601 -102794977 - LTR40b LTR ERVL 0 462 1 276 373 81 12 chr3 124729743 124729904 -102794674 - MIR3 SINE MIR -6 202 31 559 344 160 13 chr3 124731441 124731979 -102792599 + L3 LINE CR1 954 1570 -7 661 363 24 18 chr3 124732133 124732464 -102792114 + LTR16A LTR ERVL 97 429 -21 1361 296 63 7 chr3 124733613 124734075 -102790503 + HERV16 LTR ERVL 1713 2200 -2796 1639 325 64 31 chr3 124734144 124735101 -102789477 + HERV16 LTR ERVL 2348 3374 -1900 2013 253 73 44 chr3 124735166 124735889 -102788689 - L2 LINE L2 -629 2685 1942 254 316 84 7 chr3 124736501 124736656 -102787922 - MIR SINE MIR -25 237 71 334 245 19 84 chr3 124736756 124736911 -102787667 + L1M4 LINE L1 3133 3277 -2869 257 378 33 20 chr3 124737225 124737376 -102787202 - L2 LINE L2 -540 2774 2622 29 28 0 0 chr3 124737728 124737764 -102786814 + AT_rich Low_complexity Low_complexity 1 36 0 28 0 0 0 chr3 124738077 124738105 -102786473 + AT_rich Low_complexity Low_complexity 1 28 0 361 349 0 54 chr3 124738186 124738278 -102786300 + MIR SINE MIR 8 91 -171 1460 223 77 25 chr3 124738278 124738722 -102785856 + MLT1C LTR MaLR 1 467 0 361 349 0 54 chr3 124738722 124738778 -102785800 + MIR SINE MIR 91 148 -114 2281 81 3 0 chr3 124738779 124739074 -102785504 + AluY SINE Alu 1 296 -15 559 232 45 19 chr3 124739103 124739258 -102785320 + MIR SINE MIR 101 259 -3 183 297 81 0 chr3 124739344 124739418 -102785160 + MIR SINE MIR 182 261 -1 23 0 0 0 chr3 124739429 124739452 -102785126 + AT_rich Low_complexity Low_complexity 1 23 0 376 221 46 38 chr3 124739947 124740078 -102784500 + L1MC4 LINE L1 7766 7897 -145 1805 169 23 12 chr3 124740092 124740435 -102784143 + MER7A DNA MER2_type 1 345 -1 187 130 22 22 chr3 124740436 124740482 -102784096 + (CATA)n Simple_repeat Simple_repeat 3 48 0 227 231 8 58 chr3 124740500 124740621 -102783957 + L1MC4 LINE L1 7922 8036 -6 971 281 50 44 chr3 124741851 124742362 -102782216 - MLT1H LTR MaLR -8 582 25 207 158 0 70 chr3 124742425 124742482 -102782096 + (CAAAC)n Simple_repeat Simple_repeat 2 54 0 264 324 66 0 chr3 124742568 124742704 -102781874 + L1ME LINE L1 5568 5712 -409 21 0 0 0 chr3 124744481 124744502 -102780076 + AT_rich Low_complexity Low_complexity 1 21 0 485 122 134 0 chr3 124745038 124745120 -102779458 + L1MB3 LINE L1 6079 6171 -12 726 243 136 60 chr3 124745294 124745611 -102778967 + MLT1D LTR MaLR 20 360 -145 4375 199 21 22 chr3 124745611 124746773 -102777805 + L1M3 LINE L1 4327 5485 -683 978 140 0 0 chr3 124746773 124746916 -102777662 + AluJb SINE Alu 1 143 -169 484 135 0 0 chr3 124746916 124746990 -102777588 - FRAM SINE Alu -81 95 22 21419 59 1 4 chr3 124747146 124750767 -102773811 - L1P LINE L1 -2408 3738 2 23 33 0 0 chr3 124751427 124751457 -102773121 + AT_rich Low_complexity Low_complexity 1 30 0 260 297 68 34 chr3 124751761 124751879 -102772699 - L2 LINE L2 -8 3305 3184 21 36 0 0 chr3 124753088 124753116 -102771462 + AT_rich Low_complexity Low_complexity 1 28 0 44 35 0 0 chr3 124753130 124753188 -102771390 + AT_rich Low_complexity Low_complexity 1 58 0 248 305 120 5 chr3 124753515 124753715 -102770863 - L1M4 LINE L1 -2303 3843 3621 481 317 67 40 chr3 124754366 124754590 -102769988 + MIR SINE MIR 20 249 -13 414 329 9 70 chr3 124755742 124755955 -102768623 - MIR3 SINE MIR -4 204 5 203 235 39 0 chr3 124756057 124756108 -102768470 + (CATA)n Simple_repeat Simple_repeat 3 55 0 370 223 66 14 chr3 124756629 124756774 -102767804 - MLT1J2 LTR MaLR -249 262 67 242 166 35 41 chr3 124757041 124757210 -102767368 + (TA)n Simple_repeat Simple_repeat 2 169 0 21 57 0 0 chr3 124757211 124757246 -102767332 + AT_rich Low_complexity Low_complexity 1 35 0 411 201 22 45 chr3 124757251 124757430 -102767148 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 22 94 0 0 chr3 124757474 124757538 -102767040 + AT_rich Low_complexity Low_complexity 1 64 0 427 380 22 9 chr3 124757659 124757883 -102766695 + L2 LINE L2 2828 3054 -259 21 57 0 0 chr3 124757911 124757946 -102766632 + AT_rich Low_complexity Low_complexity 1 35 0 1662 153 4 4 chr3 124758277 124758551 -102766027 + L1PA16 LINE L1 5848 6121 -45 24 32 0 0 chr3 124758740 124758771 -102765807 + AT_rich Low_complexity Low_complexity 1 31 0 3070 184 14 17 chr3 124759192 124759827 -102764751 + L1MA7 LINE L1 5657 6289 -2 186 133 0 0 chr3 124759974 124760004 -102764574 + (TG)n Simple_repeat Simple_repeat 1 30 0 779 280 56 70 chr3 124760432 124760789 -102763789 + LTR16B LTR ERVL 102 453 -11 1198 164 66 138 chr3 124761309 124761736 -102762842 - MSTD LTR MaLR 0 396 1 1316 308 80 45 chr3 124762062 124762765 -102761813 + HERV16 LTR ERVL 931 1667 -3329 839 177 22 0 chr3 124762765 124762946 -102761632 + L1MA7 LINE L1 6107 6291 0 1316 308 80 45 chr3 124762946 124763058 -102761520 + HERV16 LTR ERVL 1667 1774 -3222 783 188 12 12 chr3 124763058 124763218 -102761360 - MLT1A1 LTR MaLR -204 161 2 23 68 0 0 chr3 124764438 124764482 -102760096 + AT_rich Low_complexity Low_complexity 1 44 0 294 206 76 22 chr3 124765216 124765308 -102759270 + MIR SINE MIR 96 192 -70 24 32 0 0 chr3 124765708 124765739 -102758839 + AT_rich Low_complexity Low_complexity 1 31 0 1454 197 20 20 chr3 124766320 124766625 -102757953 - MLT1B LTR MaLR -8 382 78 615 197 8 0 chr3 124766645 124766767 -102757811 - MLT1B LTR MaLR -267 123 1 2268 217 83 40 chr3 124767797 124768424 -102756154 - MLT1E1 LTR MaLR 0 654 1 383 71 54 0 chr3 124769459 124769515 -102755063 - tRNA-Gln-CAG tRNA tRNA -16 59 1 224 240 60 0 chr3 124771314 124771364 -102753214 + MIR SINE MIR 75 127 -81 203 353 81 34 chr3 124771414 124771589 -102752989 - MIR SINE MIR -63 145 9 42629 33 22 3 chr3 124771704 124777767 -102746811 + L1PA3 LINE L1 1 6182 0 402 21 0 0 chr3 124777843 124777890 -102746688 + (TG)n Simple_repeat Simple_repeat 2 48 0 923 257 63 68 chr3 124778537 124778934 -102745644 - L1ME3A LINE L1 -70 6100 5706 1553 244 145 38 chr3 124778938 124779502 -102745076 + L1MEc LINE L1 36 675 -5721 643 275 35 0 chr3 124779502 124779673 -102744905 - MER45A DNA AcHobo -1 177 1 1553 244 145 38 chr3 124779673 124779734 -102744844 + L1MEc LINE L1 675 728 -5668 2398 64 0 0 chr3 124779813 124780125 -102744453 - AluY SINE Alu 0 312 1 4280 72 2 7 chr3 124780212 124780769 -102743809 + MER41A LTR ERV1 1 554 0 23 0 0 0 chr3 124780979 124781002 -102743576 + AT_rich Low_complexity Low_complexity 1 23 0 3143 111 53 30 chr3 124781250 124781874 -102742704 - LTR8A LTR ERV1 0 727 1 335 339 15 0 chr3 124781875 124782005 -102742573 - MIR SINE MIR -111 151 20 1853 199 14 14 chr3 124782157 124782509 -102742069 - MLT1A1 LTR MaLR -4 361 10 269 242 0 18 chr3 124782619 124782693 -102741885 - pTR5 LTR ERV1 -26 688 78 225 198 73 62 chr3 124782696 124782792 -102741786 - MER61E LTR ERV1 -99 470 374 1249 188 107 56 chr3 124783192 124783548 -102741030 - MLT1A2 LTR MaLR 0 374 1 594 311 15 5 chr3 124784127 124784323 -102740255 + Charlie8 DNA MER1_type 3 200 -2217 23 0 0 29 chr3 124785496 124785518 -102739060 + AT_rich Low_complexity Low_complexity 1 23 -10 543 171 19 0 chr3 124785518 124785623 -102738955 - L1MB2 LINE L1 -7 6164 6058 23 0 0 29 chr3 124785623 124785634 -102738944 + AT_rich Low_complexity Low_complexity 23 33 0 33 25 0 0 chr3 124785681 124785721 -102738857 + AT_rich Low_complexity Low_complexity 1 40 0 1125 258 33 19 chr3 124785816 124786180 -102738398 - MER93b LTR ERV1 -3 370 2 302 227 0 82 chr3 124786428 124786640 -102737938 + T-rich Low_complexity Low_complexity 1 194 0 181 79 0 53 chr3 124786649 124786687 -102737891 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 426 53 0 0 chr3 124787231 124787288 -102737290 + (TTCC)n Simple_repeat Simple_repeat 1 57 0 2207 129 7 0 chr3 124787288 124787598 -102736980 - AluSx SINE Alu 0 312 1 451 252 49 0 chr3 124788178 124788301 -102736277 - L1ME LINE L1 -304 5817 5689 988 255 173 39 chr3 124788305 124789014 -102735564 - L2 LINE L2 -6 3307 2510 28 79 0 0 chr3 124789070 124789133 -102735445 + AT_rich Low_complexity Low_complexity 1 63 0 23 0 0 0 chr3 124789226 124789249 -102735329 + AT_rich Low_complexity Low_complexity 1 23 0 1843 190 49 65 chr3 124789542 124790015 -102734563 - MLT1C LTR MaLR 0 467 3 185 296 53 53 chr3 124790308 124790440 -102734138 + L2 LINE L2 3171 3302 -11 327 291 84 134 chr3 124790509 124790808 -102733770 + L2 LINE L2 2987 3270 -2 2210 80 43 7 chr3 124791890 124792190 -102732388 - AluYa5 SINE Alu 0 311 1 24 0 0 0 chr3 124792578 124792602 -102731976 + AT_rich Low_complexity Low_complexity 1 24 0 1792 145 0 30 chr3 124792815 124793111 -102731467 + AluJo SINE Alu 12 298 -14 2178 114 13 0 chr3 124793212 124793511 -102731067 - AluSp SINE Alu -9 304 2 393 297 109 0 chr3 124793915 124794090 -102730488 - LTR33A LTR ERVL 0 523 330 651 263 71 22 chr3 124794122 124794346 -102730232 - LTR33A LTR ERVL -268 255 21 189 107 0 0 chr3 124794811 124794839 -102729739 + (TG)n Simple_repeat Simple_repeat 1 28 0 357 117 0 0 chr3 124794840 124794900 -102729678 + (GA)n Simple_repeat Simple_repeat 1 60 0 377 316 57 36 chr3 124795155 124795348 -102729230 - MIR SINE MIR -21 241 45 1794 117 97 29 chr3 124795803 124796154 -102728424 - THE1C LTR MaLR 0 375 1 232 316 116 11 chr3 124796329 124796424 -102728154 + MIR SINE MIR 17 121 -87 721 289 34 54 chr3 124797516 124797866 -102726712 - L2 LINE L2 -3 3310 2968 2911 212 78 60 chr3 124798463 124799825 -102724753 - L1ME1 LINE L1 -4 6162 4785 587 225 69 6 chr3 124799816 124799989 -102724589 - L1 LINE L1 -801 5581 5398 * 6797 243 50 33 chr3 124799993 124801571 -102723007 - L1 LINE L1 -1305 5077 3449 821 136 0 0 chr3 124801571 124801689 -102722889 - FLAM_C SINE Alu -15 118 1 6797 243 50 33 chr3 124801689 124802374 -102722204 - L1 LINE L1 -2933 3449 2777 4874 180 28 6 chr3 124802374 124803652 -102720926 + L1MA7 LINE L1 4985 6291 0 12041 177 35 25 chr3 124803656 124805567 -102719011 - L1 LINE L1 -3748 2634 743 215 30 0 30 chr3 124805567 124805600 -102718978 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 12041 177 35 25 chr3 124805600 124805805 -102718773 - L1 LINE L1 -5639 743 542 2102 99 10 16 chr3 124805805 124805940 -102718638 + AluSq SINE Alu 1 135 -178 2420 75 0 3 chr3 124805940 124806246 -102718332 + AluY SINE Alu 1 305 -6 2102 99 10 16 chr3 124806246 124806422 -102718156 + AluSq SINE Alu 135 310 -3 12041 177 35 25 chr3 124806422 124806889 -102717689 - L1 LINE L1 -5840 542 24 4558 264 89 19 chr3 124806887 124808723 -102715855 - L1ME1 LINE L1 -1342 4804 2839 * 596 281 77 64 chr3 124809706 124810315 -102714263 + L1MEc LINE L1 1182 1951 -4612 5468 151 6 12 chr3 124810338 124811247 -102713331 - MER4D LTR ERV1 0 903 1 282 29 0 0 chr3 124811309 124811344 -102713234 + (TG)n Simple_repeat Simple_repeat 2 36 0 628 195 17 0 chr3 124811345 124811463 -102713115 + MER58B DNA MER1_type 222 341 0 23 54 0 0 chr3 124811783 124811820 -102712758 + AT_rich Low_complexity Low_complexity 1 37 0 182 212 0 0 chr3 124812081 124812114 -102712464 - L2 LINE L2 -20 3293 3261 * 343 317 16 24 chr3 124812113 124812236 -102712342 - MIR SINE MIR -94 168 47 22 0 0 0 chr3 124812619 124812641 -102711937 + AT_rich Low_complexity Low_complexity 1 22 0 1868 170 79 3 chr3 124813582 124813912 -102710666 + MSTB LTR MaLR 72 426 0 8344 169 54 22 chr3 124813912 124814173 -102710405 + MSTB-int LTR MaLR 1 252 -1399 270 0 0 0 chr3 124814173 124814203 -102710375 + (CAA)n Simple_repeat Simple_repeat 1 30 0 8344 169 54 22 chr3 124814203 124814932 -102709646 + MSTB-int LTR MaLR 252 956 -695 2580 117 3 5 chr3 124814932 124815308 -102709270 - THE1C LTR MaLR 0 375 1 9288 141 40 11 chr3 124815308 124816843 -102707735 - THE1C-int LTR MaLR 0 1580 1 2332 97 8 75 chr3 124816843 124817245 -102707333 - THE1C LTR MaLR 0 375 1 8344 169 54 22 chr3 124817245 124817851 -102706727 + MSTB-int LTR MaLR 955 1651 0 2358 174 12 7 chr3 124817851 124818264 -102706314 + MSTB LTR MaLR 1 415 -11 247 333 173 6 chr3 124818752 124818920 -102705658 + MIR SINE MIR 67 262 0 562 270 49 12 chr3 124820219 124820382 -102704196 + MER5B DNA MER1_type 2 170 -8 198 159 0 68 chr3 124820408 124820452 -102704126 - MIR3 SINE MIR -18 190 150 389 319 56 6 chr3 124821969 124822129 -102702449 + L1ME3A LINE L1 5674 5841 -329 239 250 0 18 chr3 124822182 124822238 -102702340 + L1MC4a LINE L1 5527 5581 -581 679 308 56 24 chr3 124822262 124822512 -102702066 - MIR SINE MIR -4 258 1 305 312 79 45 chr3 124822530 124822604 -102701974 + L1MC4a LINE L1 5620 5690 -2118 1233 256 49 33 chr3 124822604 124822791 -102701787 + MSTB LTR MaLR 1 184 -212 2039 112 35 0 chr3 124822791 124823077 -102701501 + AluSp SINE Alu 1 296 -17 1233 256 49 33 chr3 124823077 124823279 -102701299 + MSTB LTR MaLR 184 396 0 305 312 79 45 chr3 124823279 124823470 -102701108 + L1MC4a LINE L1 5690 5894 -1914 342 323 134 0 chr3 124823693 124823857 -102700721 + L1ME4a LINE L1 5554 5739 -382 1885 201 14 5 chr3 124823864 124824233 -102700345 - MLT1B LTR MaLR -18 372 1 313 248 157 7 chr3 124824256 124824409 -102700169 + L1ME4a LINE L1 5769 5944 -177 224 250 0 0 chr3 124824620 124824672 -102699906 - L2 LINE L2 0 3272 3221 395 310 82 62 chr3 124824870 124825111 -102699467 + L3 LINE CR1 1216 1468 -109 852 215 45 0 chr3 124825111 124825311 -102699267 + MER3 DNA MER1_type 1 209 0 395 310 82 62 chr3 124825311 124825421 -102699157 + L3 LINE CR1 1468 1574 -3 2015 184 19 2 chr3 124826923 124827342 -102697236 + L1 LINE L1 4431 4856 -1290 625 173 9 0 chr3 124827347 124827457 -102697121 + AluSp/q SINE Alu 164 274 -39 4429 140 59 35 chr3 124827457 124828291 -102696287 + L1PA16 LINE L1 5302 6155 -11 1460 174 10 39 chr3 124828320 124828625 -102695953 + AluJb SINE Alu 14 309 -3 22 0 0 0 chr3 124828625 124828647 -102695931 + AT_rich Low_complexity Low_complexity 1 22 0 304 320 188 17 chr3 124830357 124830538 -102694040 - MIR SINE MIR 0 262 51 191 395 92 8 chr3 124831096 124831215 -102693363 - L2 LINE L2 -212 3060 2932 188 339 58 45 chr3 124831843 124832067 -102692511 - L2 LINE L2 -17 3296 3070 22 0 0 0 chr3 124833200 124833222 -102691356 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 124833316 124833337 -102691241 + AT_rich Low_complexity Low_complexity 1 21 0 453 334 101 28 chr3 124834622 124834948 -102689630 + L2 LINE L2 2378 2727 -587 2627 144 43 105 chr3 124835181 124835577 -102689001 - LTR49 LTR ERV1 0 595 176 2715 3 0 0 chr3 124835577 124835874 -102688704 - AluYa5 SINE Alu -14 297 1 3022 75 2 47 chr3 124835877 124836328 -102688250 - L1PA7 LINE L1 -13 6141 5711 2627 144 43 105 chr3 124836328 124836558 -102688020 - LTR49 LTR ERV1 -421 174 4 5149 273 80 47 chr3 124836741 124839477 -102685101 - L1MDa LINE L1 -1249 5291 2396 2333 97 0 3 chr3 124839477 124839788 -102684790 + AluSg SINE Alu 1 310 0 5149 273 80 47 chr3 124839788 124840834 -102683744 - L1MDa LINE L1 -4144 2396 1386 1510 274 73 36 chr3 124840933 124841550 -102683028 - L1MDa LINE L1 -5378 1152 513 2008 175 91 30 chr3 124841923 124842385 -102682193 - LTR2B LTR ERV1 0 490 1 23 0 0 0 chr3 124842925 124842948 -102681630 + AT_rich Low_complexity Low_complexity 1 23 0 213 121 0 0 chr3 124843062 124843095 -102681483 + (GAAA)n Simple_repeat Simple_repeat 3 35 0 195 42 0 0 chr3 124843974 124843998 -102680580 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 22 35 0 0 chr3 124844272 124844301 -102680277 + AT_rich Low_complexity Low_complexity 1 29 0 1232 284 135 32 chr3 124845406 124845941 -102678637 - MLT1E LTR MaLR -3 590 1 265 229 0 0 chr3 124846042 124846112 -102678466 + L1MCc LINE L1 1411 1480 -4943 242 143 0 114 chr3 124846622 124846692 -102677886 + U2 snRNA snRNA 83 144 -44 11162 180 51 9 chr3 124846692 124848972 -102675606 + L1MA3 LINE L1 65 2449 -5116 13291 180 31 24 chr3 124849028 124851876 -102672702 + L1MA3 LINE L1 2901 5789 -1935 1604 130 0 67 chr3 124851876 124852160 -102672418 + AluSx SINE Alu 40 304 -8 13291 180 31 24 chr3 124852160 124854111 -102670467 + L1MA3 LINE L1 5789 7724 0 230 242 76 30 chr3 124854543 124854609 -102669969 - L2 LINE L2 -31 3241 3173 312 346 0 37 chr3 124855442 124855549 -102669029 + L2 LINE L2 2898 3000 -313 307 75 0 0 chr3 124855592 124855632 -102668946 + MADE1 DNA Mariner 2 41 -39 231 182 0 0 chr3 124855657 124855701 -102668877 + L2 LINE L2 3107 3150 -163 274 303 25 25 chr3 124855707 124855829 -102668749 + L2 LINE L2 2729 2850 -464 2495 247 63 36 chr3 124855844 124856653 -102667925 - L2 LINE L2 -540 2774 1944 314 300 63 55 chr3 124858064 124858317 -102666261 + MARNA DNA Mariner 94 348 -238 398 265 71 18 chr3 124858320 124858490 -102666088 + L1MC5 LINE L1 7289 7467 -494 274 307 100 36 chr3 124861001 124861141 -102663437 - L2 LINE L2 0 3313 3165 316 196 0 31 chr3 124861469 124861566 -102663012 + CT-rich Low_complexity Low_complexity 3 96 0 23 0 0 0 chr3 124861566 124861589 -102662989 + AT_rich Low_complexity Low_complexity 1 23 0 261 313 236 37 chr3 124861681 124861927 -102662651 + L3 LINE CR1 521 815 -762 186 43 0 0 chr3 124862074 124862097 -102662481 + (TA)n Simple_repeat Simple_repeat 2 24 0 285 345 82 0 chr3 124862214 124862434 -102662144 - L1ME LINE L1 -309 5812 5575 278 269 78 60 chr3 124862578 124862745 -102661833 + MER20B DNA MER1_type 7 176 -607 304 337 0 0 chr3 124862914 124863012 -102661566 + MER117 DNA MER1_type 6 103 -94 182 431 0 0 chr3 124863140 124863212 -102661366 - L3 LINE CR1 -433 1144 1073 1962 177 13 39 chr3 124863233 124863622 -102660956 + MLT1B LTR MaLR 12 390 0 340 169 39 0 chr3 124865554 124865684 -102658894 + (TA)n Simple_repeat Simple_repeat 2 136 0 24 32 0 0 chr3 124865686 124865717 -102658861 + AT_rich Low_complexity Low_complexity 1 31 0 231 281 110 41 chr3 124865823 124866069 -102658509 + L1ME LINE L1 5350 5612 -558 786 169 73 0 chr3 124866589 124866725 -102657853 - MSTD LTR MaLR 0 396 251 39 38 0 0 chr3 124867611 124867664 -102656914 + AT_rich Low_complexity Low_complexity 1 53 0 192 125 0 0 chr3 124868220 124868252 -102656326 + (TGGA)n Simple_repeat Simple_repeat 2 33 0 4342 179 22 4 chr3 124868300 124869067 -102655511 + LTR39 LTR ERV1 3 783 0 460 318 178 5 chr3 124869949 124870163 -102654415 + MIR SINE MIR 2 252 -10 1822 156 49 25 chr3 124870303 124870669 -102653909 - THE1C LTR MaLR 0 375 1 182 255 20 0 chr3 124870926 124870977 -102653601 + MIR SINE MIR 161 212 -50 346 322 50 8 chr3 124871256 124871377 -102653201 - MIR3 SINE MIR -27 181 56 8285 187 13 11 chr3 124872732 124874223 -102650355 - L1MA3 LINE L1 -6 6299 4802 2121 117 7 3 chr3 124874223 124874532 -102650046 - AluY SINE Alu -1 310 1 8285 187 13 11 chr3 124874532 124875758 -102648820 - L1MA3 LINE L1 -1503 4802 3579 2300 190 14 2 chr3 124875759 124876180 -102648398 - MSTA LTR MaLR 0 428 3 2568 159 5 7 chr3 124876182 124876617 -102647961 - MSTA-int LTR MaLR 0 1651 1218 518 241 13 51 chr3 124877710 124877868 -102646710 + MER97b DNA MER1_type? 26 177 -876 5085 155 22 27 chr3 124878153 124879081 -102645497 - MER49 LTR ERV1 0 923 1 258 206 72 22 chr3 124879275 124879375 -102645203 - L1M LINE L1 -805 5341 5246 381 258 80 33 chr3 124879556 124879707 -102644871 - L1ME LINE L1 -5901 169 12 180 304 25 13 chr3 124879720 124879799 -102644779 + L2 LINE L2 3226 3305 -8 2043 141 3 3 chr3 124879801 124880107 -102644471 - AluSx SINE Alu -6 306 1 1048 294 108 29 chr3 124880305 124880853 -102643725 - MLT1E LTR MaLR -2 591 1 4609 159 41 6 chr3 124881111 124881977 -102642601 + MER4D LTR ERV1 1 664 0 2334 100 19 35 chr3 124883744 124884114 -102640464 - THE1B LTR MaLR 0 364 1 11388 113 7 0 chr3 124884114 124885683 -102638895 - THE1B-int LTR MaLR 0 1580 1 1742 169 82 20 chr3 124885683 124886026 -102638552 - THE1B LTR MaLR 0 364 1 648 281 80 72 chr3 124887175 124887578 -102637000 - MLT1G LTR MaLR -113 429 31 216 272 37 110 chr3 124887652 124887788 -102636790 - MIR SINE MIR -67 141 16 21 36 0 0 chr3 124888728 124888756 -102635822 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 124889278 124889300 -102635278 + AT_rich Low_complexity Low_complexity 1 22 0 1335 212 0 38 chr3 124889386 124889674 -102634904 + AluJo SINE Alu 2 278 -34 254 294 8 76 chr3 124890024 124890143 -102634435 - L2 LINE L2 -15 3257 3147 509 286 53 12 chr3 124891165 124891336 -102633242 - MIR SINE MIR 0 262 85 326 227 10 72 chr3 124891481 124891578 -102633000 + HERV16 LTR ERVL 2685 2775 -2221 515 257 9 0 chr3 124891578 124891691 -102632887 + MER8 DNA MER2_type 126 239 0 893 311 46 14 chr3 124891729 124892095 -102632483 - HERV16 LTR ERVL -4618 378 1 838 341 26 16 chr3 124892095 124892403 -102632175 - LTR16A LTR ERVL 0 450 140 318 269 0 0 chr3 124892782 124892860 -102631718 + MIR SINE MIR 74 151 -111 1727 165 0 14 chr3 124892860 124893157 -102631421 + AluJb SINE Alu 1 293 -19 236 241 0 36 chr3 124893606 124893689 -102630889 + T-rich Low_complexity Low_complexity 1 80 0 3880 154 31 21 chr3 124893762 124894523 -102630055 + L1MA4 LINE L1 5527 6295 -5 470 215 120 120 chr3 124894607 124894922 -102629656 - L1ME4a LINE L1 -77 6044 5727 2164 131 0 10 chr3 124894922 124895234 -102629344 - AluSg SINE Alu -1 309 1 470 215 120 120 chr3 124895234 124895300 -102629278 - L1ME4a LINE L1 -393 5728 5663 953 108 7 0 chr3 124895406 124895545 -102629033 + L1MA2 LINE L1 6165 6304 0 24 0 0 0 chr3 124895785 124895809 -102628769 + AT_rich Low_complexity Low_complexity 1 24 0 231 167 0 0 chr3 124896432 124896474 -102628104 + A-rich Low_complexity Low_complexity 1 42 0 13649 197 57 8 chr3 124896565 124902961 -102621617 + L1PB1 LINE L1 6 6877 0 1729 171 3 34 chr3 124903609 124903965 -102620613 + AluJo SINE Alu 1 346 0 24 32 0 0 chr3 124904117 124904148 -102620430 + AT_rich Low_complexity Low_complexity 1 31 0 504 233 68 0 chr3 124904369 124904455 -102620123 - FLAM_A SINE Alu -169 142 42 2041 136 54 25 chr3 124904455 124904809 -102619769 - THE1B LTR MaLR 0 364 1 504 233 68 0 chr3 124904809 124904855 -102619723 - FLAM_A SINE Alu -269 42 1 609 226 9 0 chr3 124904877 124904992 -102619586 - FLAM_C SINE Alu -17 116 1 2192 112 39 13 chr3 124905839 124906223 -102618355 - L1MA3 LINE L1 0 6305 5912 362 233 98 80 chr3 124906651 124906758 -102617820 - MIR SINE MIR 0 262 150 2045 84 35 17 chr3 124906758 124907045 -102617533 - AluSc SINE Alu -17 292 1 362 233 98 80 chr3 124907045 124907100 -102617478 - MIR SINE MIR -112 150 97 22 35 0 0 chr3 124907162 124907191 -102617387 + AT_rich Low_complexity Low_complexity 1 29 0 2053 152 0 0 chr3 124907193 124907503 -102617075 + AluSg SINE Alu 1 310 0 393 117 0 0 chr3 124908063 124908123 -102616455 + (TA)n Simple_repeat Simple_repeat 1 60 0 30408 119 7 61 chr3 124908275 124908881 -102615697 - L1PA7 LINE L1 -34 6120 5483 2360 94 0 0 chr3 124908881 124909178 -102615400 + AluY SINE Alu 1 297 -14 30408 119 7 61 chr3 124909178 124915037 -102609541 - L1PA7 LINE L1 -671 5483 12 423 179 0 98 chr3 124915063 124915186 -102609392 - LTR48 LTR ERV1 -72 715 605 536 260 24 82 chr3 124916679 124916887 -102607691 + MIR SINE MIR 33 228 -34 556 293 47 35 chr3 124917196 124917623 -102606955 - HAL1b LINE L1 -820 528 97 22 0 0 0 chr3 124917927 124917949 -102606629 + AT_rich Low_complexity Low_complexity 1 22 0 288 154 0 0 chr3 124919007 124919059 -102605519 + (TA)n Simple_repeat Simple_repeat 1 52 0 940 289 65 40 chr3 124920596 124920997 -102603581 - L2 LINE L2 -2 3311 2901 296 255 0 20 chr3 124921143 124921241 -102603337 - HAL1 LINE L1 -298 2209 2114 2793 275 44 62 chr3 124921364 124923085 -102601493 - L1M2c LINE L1 -4497 1854 335 420 256 0 11 chr3 124923124 124923214 -102601364 - L1M2c LINE L1 -6192 89 1 266 250 25 25 chr3 124923609 124923689 -102600889 - MLT1L LTR MaLR -87 528 449 319 354 51 17 chr3 124923940 124924115 -102600463 - HAL1 LINE L1 -1908 599 419 1029 236 41 0 chr3 124924182 124924453 -102600125 - L1MC/D LINE L1 -560 6076 5795 3627 224 55 50 chr3 124924457 124925286 -102599292 - L1MC/D LINE L1 -4263 2277 1438 1052 81 23 11 chr3 124925286 124925460 -102599118 + (TTTC)n Simple_repeat Simple_repeat 3 178 0 3627 224 55 50 chr3 124925460 124925892 -102598686 - L1MC/D LINE L1 -5102 1438 1010 1124 243 32 40 chr3 124926216 124926315 -102598263 - L1MC/D LINE L1 -6140 400 302 13219 152 39 11 chr3 124926315 124928665 -102595913 - Tigger1 DNA MER2_type 0 2418 2 1124 243 32 40 chr3 124928665 124928935 -102595643 - L1MC/D LINE L1 -6238 302 34 1788 236 65 23 chr3 124930388 124931007 -102593571 - L1ME2 LINE L1 -7 6157 5513 24 77 0 0 chr3 124933238 124933290 -102591288 + AT_rich Low_complexity Low_complexity 1 52 0 1415 260 69 22 chr3 124933799 124934337 -102590241 - L1MC4 LINE L1 -142 7900 7338 438 108 0 0 chr3 124934347 124934412 -102590166 + (CA)n Simple_repeat Simple_repeat 2 66 0 6335 63 0 4 chr3 124934521 124935327 -102589251 - L1PA7 LINE L1 0 6154 5352 2116 47 0 8 chr3 124935327 124935580 -102588998 - AluY SINE Alu -32 279 29 2613 96 5 54 chr3 124935580 124936007 -102588571 - L1PA7 LINE L1 -1052 5094 4689 210 331 48 57 chr3 124936927 124937051 -102587527 - L3 LINE CR1 -19 1558 1436 1463 209 105 86 chr3 124937906 124938081 -102586497 + MLT1E1 LTR MaLR 1 171 -483 526 129 21 0 chr3 124938081 124938174 -102586404 + L1MA10 LINE L1 6238 6332 -2 1463 209 105 86 chr3 124938174 124938600 -102585978 + MLT1E1 LTR MaLR 171 613 -41 206 299 137 0 chr3 124939550 124939667 -102584911 + MIR SINE MIR 77 209 -53 23 0 0 0 chr3 124940616 124940639 -102583939 + AT_rich Low_complexity Low_complexity 1 23 0 550 313 96 108 chr3 124941022 124941581 -102582997 - L2 LINE L2 0 3313 2735 1282 119 11 116 chr3 124941583 124941860 -102582718 + MER50 LTR ERV1 486 733 -1 404 271 19 9 chr3 124941870 124941977 -102582601 + MER50-int LTR ERV1 12 119 -7086 180 111 0 0 chr3 124941980 124942007 -102582571 + (A)n Simple_repeat Simple_repeat 1 27 0 23 0 0 0 chr3 124942215 124942238 -102582340 + AT_rich Low_complexity Low_complexity 1 23 0 189 214 0 0 chr3 124943051 124943093 -102581485 + (CA)n Simple_repeat Simple_repeat 1 42 0 938 279 85 7 chr3 124944170 124944501 -102580077 + L1ME3 LINE L1 5801 6170 0 390 342 19 25 chr3 124944501 124944659 -102579919 - MER5A DNA MER1_type -32 157 1 223 244 192 0 chr3 124945885 124945963 -102578615 + MIR SINE MIR 148 240 -22 22 0 0 0 chr3 124946133 124946155 -102578423 + AT_rich Low_complexity Low_complexity 1 22 0 247 288 0 0 chr3 124946319 124946392 -102578186 + (CAAAC)n Simple_repeat Simple_repeat 2 74 0 21 57 0 0 chr3 124946647 124946682 -102577896 + AT_rich Low_complexity Low_complexity 1 35 0 364 254 59 25 chr3 124947173 124947291 -102577287 - MIR SINE MIR -100 162 41 196 352 66 0 chr3 124948198 124948289 -102576289 - MIR SINE MIR -124 138 42 302 352 56 49 chr3 124948618 124948942 -102575636 - L2 LINE L2 -36 3277 2952 234 385 28 21 chr3 124951138 124951281 -102573297 + MIR3 SINE MIR 17 160 -48 198 0 0 0 chr3 124952451 124952473 -102572105 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 883 227 55 31 chr3 124952541 124952892 -102571686 + MSTD LTR MaLR 1 396 0 699 213 8 0 chr3 124953846 124953973 -102570605 + FLAM_C SINE Alu 1 128 -15 50 18 0 0 chr3 124953980 124954037 -102570541 + AT_rich Low_complexity Low_complexity 1 57 0 184 320 39 58 chr3 124954086 124954189 -102570389 + MIR SINE MIR 106 206 -56 2511 240 42 24 chr3 124954406 124955405 -102569173 - L1ME1 LINE L1 -148 6018 5100 1229 227 67 65 chr3 124955405 124955868 -102568710 - MLT2C2 LTR ERVL 0 464 1 2511 240 42 24 chr3 124955868 124955953 -102568625 - L1ME1 LINE L1 -1066 5100 5018 438 290 72 68 chr3 124955984 124956277 -102568301 + L1ME LINE L1 4407 4700 -1446 16949 85 15 9 chr3 124956433 124956535 -102568043 + L1MA1 LINE L1 15 115 -7606 2342 73 0 0 chr3 124956535 124956836 -102567742 + AluY SINE Alu 3 303 -8 16949 85 15 9 chr3 124956836 124961736 -102562842 + L1MA1 LINE L1 115 5231 -2490 2099 137 0 0 chr3 124961736 124962036 -102562542 - AluSq SINE Alu -13 300 1 16949 85 15 9 chr3 124962036 124964020 -102560558 + L1MA1 LINE L1 5231 7201 -520 261 0 0 0 chr3 124964431 124964460 -102560118 + (CAAAAA)n Simple_repeat Simple_repeat 2 30 0 3510 108 13 2 chr3 124964466 124964994 -102559584 + L1MA1 LINE L1 7188 7721 0 844 271 31 60 chr3 124964998 124965646 -102558932 + L1ME LINE L1 4879 5513 -657 614 272 54 72 chr3 124965658 124965989 -102558589 + MER46C DNA MER2_type 14 338 0 444 257 126 3 chr3 124965994 124966168 -102558410 + L1ME LINE L1 5573 5765 -356 2134 187 58 12 chr3 124966365 124966770 -102557808 + MLT2C2 LTR ERVL 1 468 -52 342 67 0 0 chr3 124966770 124966815 -102557763 + (TG)n Simple_repeat Simple_repeat 2 46 0 2134 187 58 12 chr3 124966815 124966826 -102557752 + MLT2C2 LTR ERVL 468 477 -43 24 32 0 0 chr3 124967124 124967155 -102557423 + AT_rich Low_complexity Low_complexity 1 31 0 12285 26 0 0 chr3 124968791 124971011 -102553567 - L1PA2 LINE L1 -3 6152 3933 245 171 0 0 chr3 124971534 124971575 -102553003 + MER112 DNA MER1_type 1 41 -219 239 283 0 0 chr3 124972243 124972296 -102552282 + (CACCAT)n Simple_repeat Simple_repeat 4 56 0 1821 175 75 14 chr3 124972347 124972718 -102551860 - MSTD LTR MaLR -2 394 1 1636 186 20 102 chr3 124973337 124973788 -102550790 + MLT2D LTR ERVL 1 414 0 34 55 0 0 chr3 124975453 124975508 -102549070 + AT_rich Low_complexity Low_complexity 1 55 0 4768 187 63 8 chr3 124975555 124976159 -102548419 - L1PA16 LINE L1 -9 6157 5587 212 0 36 0 chr3 124976159 124976187 -102548391 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 4768 187 63 8 chr3 124976187 124977236 -102547342 - L1PA16 LINE L1 -579 5587 4411 392 274 43 8 chr3 124977817 124977934 -102546644 + MIR3 SINE MIR 75 195 -13 201 296 112 66 chr3 124977958 124978110 -102546468 - MIR SINE MIR -46 216 58 1548 221 150 2 chr3 124978683 124979104 -102545474 - MLT1D LTR MaLR -8 497 15 761 329 29 63 chr3 124979419 124979830 -102544748 + L2 LINE L2 2913 3309 -4 2016 101 0 0 chr3 124981821 124982099 -102542479 - L1P5 LINE L1 -486 5665 5388 2219 96 3 0 chr3 124983323 124983615 -102540963 + AluSp SINE Alu 1 293 -20 5360 231 48 22 chr3 124984067 124985690 -102538888 + L1MA10 LINE L1 2891 4556 -1590 3607 199 42 75 chr3 124985696 124986699 -102537879 + L1MA10 LINE L1 5312 6281 -53 344 350 30 10 chr3 124986748 124986948 -102537630 + L1ME4a LINE L1 5175 5378 -768 295 280 40 10 chr3 124986960 124987060 -102537518 - MIR SINE MIR 0 262 160 521 258 40 24 chr3 124987107 124987231 -102537347 - MIR SINE MIR -100 162 37 310 239 135 25 chr3 124987309 124987472 -102537106 + L1ME4a LINE L1 5676 5856 -265 41 21 0 0 chr3 124987514 124987562 -102537016 + AT_rich Low_complexity Low_complexity 1 48 0 278 274 126 0 chr3 124987730 124987825 -102536753 + MIR SINE MIR 91 197 -65 244 160 40 0 chr3 124988567 124988617 -102535961 - L1MA10 LINE L1 -7 6327 6276 687 286 4 52 chr3 124988627 124988879 -102535699 + MER102a DNA MER1_type 68 307 -23 368 331 21 14 chr3 124989221 124989363 -102535215 + MIR3 SINE MIR 62 204 -4 333 316 26 42 chr3 124989974 124990164 -102534414 + MIR SINE MIR 28 214 -48 21 0 0 0 chr3 124990504 124990525 -102534053 + AT_rich Low_complexity Low_complexity 1 21 0 2158 269 114 15 chr3 124990666 124990822 -102533756 - Charlie2a DNA MER1_type 0 2862 2723 2075 117 0 0 chr3 124990822 124991126 -102533452 - AluSg SINE Alu 0 304 1 2158 269 114 15 chr3 124991126 124992107 -102532471 - Charlie2a DNA MER1_type -139 2723 1611 739 328 90 3 chr3 124992172 124992507 -102532071 - Charlie2a DNA MER1_type -2334 528 165 4516 211 66 31 chr3 124993012 124994118 -102530460 + L1M4 LINE L1 550 1694 -4848 370 273 16 16 chr3 124994772 124994870 -102529708 - L2 LINE L2 -75 3238 3138 659 263 17 6 chr3 124994870 124995045 -102529533 - MER45A DNA AcHobo -1 177 1 370 273 16 16 chr3 124995045 124995067 -102529511 - L2 LINE L2 -174 3139 3118 364 277 127 24 chr3 124995333 124995499 -102529079 + MIR SINE MIR 67 249 -13 7764 240 83 29 chr3 124995955 124998062 -102526516 + ERVL LTR ERVL 1030 3250 -2514 2459 188 46 0 chr3 124998063 124998516 -102526062 + Tigger1 DNA MER2_type 29 502 -1916 * 5226 167 27 8 chr3 124998508 124999467 -102525111 + Tigger1 DNA MER2_type 1442 2418 0 8993 201 51 13 chr3 124999467 125001274 -102523304 + ERVL LTR ERVL 3550 5424 -340 204 111 0 0 chr3 125001276 125001312 -102523266 + (TG)n Simple_repeat Simple_repeat 1 36 0 210 271 0 0 chr3 125003456 125003504 -102521074 + MIR SINE MIR 205 252 -10 260 109 0 0 chr3 125003591 125003637 -102520941 + L1MA8 LINE L1 6243 6288 -3 24 32 0 0 chr3 125003856 125003887 -102520691 + AT_rich Low_complexity Low_complexity 1 31 0 190 324 73 0 chr3 125003961 125004029 -102520549 - MIR SINE MIR -80 182 110 1058 107 0 0 chr3 125004421 125004571 -102520007 + L1PA13 LINE L1 6003 6152 -11 3157 144 39 6 chr3 125005910 125006430 -102518148 + MER6A DNA MER2_type 2 538 -67 725 161 20 44 chr3 125006442 125006608 -102517970 - L1MA9 LINE L1 -350 5941 5783 1368 207 6 28 chr3 125006627 125006950 -102517628 - L1MA9 LINE L1 -519 5793 5478 813 220 12 0 chr3 125006958 125007131 -102517447 - AluSq SINE Alu -2 311 137 282 264 21 2 chr3 125007143 125007240 -102517338 - L1MA9 LINE L1 -710 5473 5376 3157 129 17 22 chr3 125007379 125007969 -102516609 - L1P LINE L1 -4607 1539 953 257 394 0 10 chr3 125058699 125058803 -102465775 + L2 LINE L2 3150 3252 -20 303 177 0 0 chr3 125059044 125059106 -102465472 + (TA)n Simple_repeat Simple_repeat 1 62 0 205 195 24 0 chr3 125060228 125060269 -102464309 + L2 LINE L2 1774 1815 -1499 232 376 37 47 chr3 125060338 125060636 -102463942 + L2 LINE L2 1938 2232 -1082 294 224 10 122 chr3 125061172 125061270 -102463308 - L2 LINE L2 -1 3312 3226 1263 293 129 27 chr3 125061294 125062083 -102462495 - L2 LINE L2 0 3313 2440 1850 118 8 0 chr3 125062190 125062453 -102462125 + AluSg SINE Alu 32 296 -14 1366 275 122 26 chr3 125062459 125063227 -102461351 - L1MEc LINE L1 -4387 2009 1168 243 0 0 0 chr3 125063299 125063326 -102461252 + (TA)n Simple_repeat Simple_repeat 1 27 0 467 300 0 8 chr3 125063747 125063867 -102460711 - MIR SINE MIR -116 146 28 641 105 11 0 chr3 125063909 125064004 -102460574 + HY3 scRNA scRNA 2 97 -4 296 146 0 0 chr3 125064004 125064052 -102460526 + (A)n Simple_repeat Simple_repeat 1 48 0 416 194 165 0 chr3 125064349 125064452 -102460126 + Charlie5 DNA MER1_type 5 124 -2488 1320 180 33 41 chr3 125064452 125064563 -102460015 + Charlie5 DNA MER1_type 2234 2344 -280 2139 107 3 7 chr3 125064563 125064862 -102459716 + AluSx SINE Alu 1 298 -14 1320 180 33 41 chr3 125064862 125065139 -102459439 + Charlie5 DNA MER1_type 2344 2619 -5 184 184 0 26 chr3 125065156 125065194 -102459384 + L2 LINE L2 3267 3303 -10 233 309 73 16 chr3 125065205 125065328 -102459250 - L2 LINE L2 -492 2822 2693 235 243 43 14 chr3 125065723 125065793 -102458785 + L2 LINE L2 2669 2740 -574 245 217 0 0 chr3 125065905 125065951 -102458627 - MLT1K LTR MaLR -8 580 535 703 287 84 0 chr3 125066212 125066414 -102458164 - MIR SINE MIR -20 242 24 297 191 44 118 chr3 125066424 125066560 -102458018 - MLT1K LTR MaLR -383 205 80 1926 145 11 34 chr3 125066886 125067237 -102457341 + MER61A LTR ERV1 1 343 0 285 365 31 25 chr3 125067543 125067702 -102456876 + L2 LINE L2 3112 3271 -1 207 265 44 0 chr3 125067702 125067770 -102456808 + GA-rich Low_complexity Low_complexity 4 74 0 21 57 0 0 chr3 125067854 125067889 -102456689 + AT_rich Low_complexity Low_complexity 1 35 0 558 270 80 53 chr3 125068477 125068703 -102455875 + MIR SINE MIR 10 241 -21 1472 130 8 32 chr3 125070461 125070708 -102453870 + THE1B LTR MaLR 77 317 -47 324 250 0 0 chr3 125070719 125070795 -102453783 - MER58A DNA MER1_type -30 77 2 24 0 0 0 chr3 125071799 125071823 -102452755 + AT_rich Low_complexity Low_complexity 1 24 0 8600 140 12 20 chr3 125071848 125073287 -102451291 - Tigger1 DNA MER2_type -7 2411 985 4691 127 7 69 chr3 125073281 125073577 -102451001 - Tigger1 DNA MER2_type -1602 816 503 * 1382 190 102 3 chr3 125073577 125073861 -102450717 - AluJo SINE Alu 0 312 1 4691 127 7 69 chr3 125073861 125073936 -102450642 - Tigger1 DNA MER2_type -1915 503 425 2317 59 0 46 chr3 125073936 125074243 -102450335 + AluY SINE Alu 4 296 -15 4691 127 7 69 chr3 125074243 125074616 -102449962 - Tigger1 DNA MER2_type -1993 425 126 2778 13 0 0 chr3 125074616 125074921 -102449657 + AluY SINE Alu 1 305 -6 4691 127 7 69 chr3 125074921 125075017 -102449561 - Tigger1 DNA MER2_type -2292 126 26 381 299 181 18 chr3 125075049 125075270 -102449308 + MIR SINE MIR 2 258 -4 23 54 0 0 chr3 125075270 125075307 -102449271 + AT_rich Low_complexity Low_complexity 1 37 0 1523 220 81 38 chr3 125076950 125077396 -102447182 + MLT1C LTR MaLR 3 467 0 869 321 108 24 chr3 125077672 125078136 -102446442 + L2 LINE L2 2127 2629 -685 30 0 0 24 chr3 125078171 125078186 -102446392 + AT_rich Low_complexity Low_complexity 1 15 -25 2648 3 0 0 chr3 125078186 125078470 -102446108 - AluYa8 SINE Alu -8 302 19 30 0 0 24 chr3 125078470 125078495 -102446083 + AT_rich Low_complexity Low_complexity 15 40 0 21 0 0 0 chr3 125079323 125079344 -102445234 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr3 125080596 125080620 -102443958 + (A)n Simple_repeat Simple_repeat 1 24 0 28 29 0 0 chr3 125080685 125080720 -102443858 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr3 125080749 125080773 -102443805 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr3 125081449 125081487 -102443091 + AT_rich Low_complexity Low_complexity 1 38 0 5239 134 26 9 chr3 125081700 125082580 -102441998 - L1PB4 LINE L1 -8 6148 5254 1491 193 22 14 chr3 125082577 125082940 -102441638 - L1PB4 LINE L1 -1507 4639 4274 * 1459 223 13 20 chr3 125083203 125083504 -102441074 - MLT1D LTR MaLR -2 503 205 278 330 75 0 chr3 125083569 125083663 -102440915 - L2 LINE L2 -11 3302 3202 313 133 50 0 chr3 125084112 125084172 -102440406 - L1MB1 LINE L1 -3 6165 6103 2319 157 47 33 chr3 125084172 125084600 -102439978 - Tigger2a DNA MER2_type 0 434 1 684 159 182 18 chr3 125084606 125084776 -102439802 - MLT1D LTR MaLR -307 198 1 555 267 146 26 chr3 125085216 125085628 -102438950 - L1ME4a LINE L1 -43 6078 5609 9862 157 19 58 chr3 125085829 125087156 -102437422 - L1MA3 LINE L1 0 7724 6347 2064 124 0 0 chr3 125087156 125087472 -102437106 - AluSg SINE Alu 0 316 1 9862 157 19 58 chr3 125087472 125088105 -102436473 - L1MA3 LINE L1 -1377 6347 5691 1563 212 3 16 chr3 125088105 125088416 -102436162 - AluJo SINE Alu -5 307 1 9862 157 19 58 chr3 125088416 125088688 -102435890 - L1MA3 LINE L1 -2033 5691 5410 2318 118 28 8 chr3 125088688 125089045 -102435533 - THE1B LTR MaLR 0 364 1 9022 111 79 43 chr3 125089045 125090571 -102434007 - THE1B-int LTR MaLR 0 1580 1 2551 113 6 6 chr3 125090571 125090935 -102433643 - THE1B LTR MaLR 0 364 1 9862 157 19 58 chr3 125090935 125092193 -102432385 - L1MA3 LINE L1 -2311 5413 4370 263 245 0 0 chr3 125092175 125092228 -102432350 - L1MA3 LINE L1 -3478 4087 4035 * 11279 120 38 16 chr3 125092210 125094096 -102430482 - L1MA3 LINE L1 -4043 3522 1595 528 152 0 0 chr3 125094089 125094168 -102430410 - L1MA3 LINE L1 -6392 1173 1095 * 247 396 86 0 chr3 125094171 125094310 -102430268 + L2 LINE L2 3117 3267 -5 1808 135 38 28 chr3 125095684 125095973 -102428605 - AluSx SINE Alu -18 294 3 374 247 141 65 chr3 125096662 125096832 -102427746 + MER5A DNA MER1_type 4 186 -3 2298 88 0 7 chr3 125098513 125098810 -102425768 - AluSq SINE Alu -18 295 1 556 323 68 0 chr3 125098855 125099047 -102425531 - MIR SINE MIR -56 206 2 210 71 0 0 chr3 125099353 125099381 -102425197 + (A)n Simple_repeat Simple_repeat 1 28 0 375 311 79 6 chr3 125100867 125101031 -102423547 + MIR SINE MIR 87 262 0 2071 133 0 13 chr3 125101210 125101518 -102423060 - AluSx SINE Alu -8 304 1 21 36 0 0 chr3 125102648 125102676 -102421902 + AT_rich Low_complexity Low_complexity 1 28 0 186 208 0 0 chr3 125102980 125103028 -102421550 + T-rich Low_complexity Low_complexity 5 52 0 192 40 0 0 chr3 125103072 125103097 -102421481 + (TG)n Simple_repeat Simple_repeat 1 25 0 408 289 35 9 chr3 125103443 125103557 -102421021 - L2 LINE L2 0 3313 3197 21 57 0 0 chr3 125103802 125103837 -102420741 + AT_rich Low_complexity Low_complexity 1 35 0 1576 155 94 0 chr3 125103894 125104159 -102420419 + AluSx SINE Alu 1 290 -22 225 268 56 0 chr3 125104191 125104262 -102420316 + L1MEc LINE L1 1921 1995 -4401 674 270 85 23 chr3 125104283 125104672 -102419906 - L1MDa LINE L1 -4120 2420 2008 * 752 282 44 65 chr3 125104644 125105077 -102419501 - L1MDa LINE L1 -5197 1346 923 426 125 11 45 chr3 125105104 125105192 -102419386 + MER53 DNA DNA 93 177 -12 408 162 10 50 chr3 125105116 125105215 -102419363 - MER53 DNA DNA -94 95 1 * 270 307 50 33 chr3 125105985 125106226 -102418352 + L1MEc LINE L1 2024 2268 -4128 184 130 43 0 chr3 125106665 125106711 -102417867 + (TAGA)n Simple_repeat Simple_repeat 2 49 0 330 323 54 30 chr3 125106728 125106895 -102417683 - MIR SINE MIR -89 173 3 1880 79 23 8 chr3 125108116 125108381 -102416197 + L1PA11 LINE L1 5906 6174 0 322 302 171 32 chr3 125108746 125109090 -102415488 + L1ME4a LINE L1 5643 6034 -87 1264 247 31 19 chr3 125109135 125109455 -102415123 + MLT1E3 LTR MaLR 301 624 0 231 271 0 51 chr3 125110196 125110255 -102414323 + L2 LINE L2 3124 3179 -93 558 323 44 32 chr3 125111136 125111384 -102413194 - MIR SINE MIR 0 262 12 433 331 26 10 chr3 125111399 125111553 -102413025 - MIR SINE MIR -65 143 12 25 0 0 0 chr3 125111568 125111593 -102412985 + AT_rich Low_complexity Low_complexity 1 25 0 507 240 52 13 chr3 125111638 125111792 -102412786 + MIR SINE MIR 71 230 -32 269 236 28 39 chr3 125111862 125112044 -102412534 + (TA)n Simple_repeat Simple_repeat 1 180 0 291 237 0 25 chr3 125112066 125112184 -102412394 + (TA)n Simple_repeat Simple_repeat 1 115 0 244 333 26 9 chr3 125112398 125112512 -102412066 + L2 LINE L2 2365 2480 -834 238 235 25 0 chr3 125112710 125112791 -102411787 + (TA)n Simple_repeat Simple_repeat 2 84 0 959 258 28 4 chr3 125112881 125113133 -102411445 + MIR SINE MIR 5 262 0 205 87 22 22 chr3 125113438 125113484 -102411094 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 184 216 0 0 chr3 125113665 125113702 -102410876 + MIR SINE MIR 215 251 -11 8720 176 38 7 chr3 125113704 125113846 -102410732 + L1PA13 LINE L1 3529 3665 -2498 333 47 0 0 chr3 125113846 125113889 -102410689 + (CA)n Simple_repeat Simple_repeat 2 44 0 8720 176 38 7 chr3 125113889 125115808 -102408770 + L1PA13 LINE L1 3665 5683 -480 180 0 0 0 chr3 125115808 125115828 -102408750 + (TA)n Simple_repeat Simple_repeat 1 20 0 8720 176 38 7 chr3 125115828 125116322 -102408256 + L1PA13 LINE L1 5683 6160 -3 217 296 162 37 chr3 125116514 125116730 -102407848 - MIR SINE MIR -17 245 3 286 346 0 52 chr3 125117293 125117429 -102407149 + MIR3 SINE MIR 5 133 -75 1796 134 51 48 chr3 125117845 125118181 -102406397 + MER1B DNA MER1_type 1 337 0 187 287 174 17 chr3 125119535 125119650 -102404928 - MER5A DNA MER1_type -24 165 33 * 310 259 194 9 chr3 125119554 125119662 -102404916 + MER5A DNA MER1_type 54 181 -8 455 325 130 26 chr3 125120455 125120794 -102403784 - L3 LINE CR1 -72 1505 1132 2532 144 166 6 chr3 125120896 125121395 -102403183 + LTR49 LTR ERV1 17 595 0 580 335 51 20 chr3 125121397 125121690 -102402888 - L3 LINE CR1 -589 988 687 496 280 126 6 chr3 125124317 125124499 -102400079 + MIR SINE MIR 53 256 -6 1606 205 54 42 chr3 125125064 125125388 -102399190 + Charlie1b DNA MER1_type 37 370 -2391 4132 106 35 5 chr3 125125388 125126012 -102398566 + LTR9B LTR ERV1 1 643 -1 1606 205 54 42 chr3 125126012 125126166 -102398412 + Charlie1b DNA MER1_type 370 521 -2 886 255 0 0 chr3 125126563 125126751 -102397827 - MER58A DNA MER1_type 0 224 37 22 0 0 0 chr3 125126941 125126963 -102397615 + AT_rich Low_complexity Low_complexity 1 22 0 2646 165 2 0 chr3 125127151 125127564 -102397014 - L1PA12 LINE L1 -7167 414 1 11622 171 26 33 chr3 125127566 125131131 -102393447 - L1MA8 LINE L1 0 7312 3782 1037 246 78 55 chr3 125131131 125131477 -102393101 - MSTD LTR MaLR -42 354 1 2551 207 16 42 chr3 125131477 125132234 -102392344 - L1MA8 LINE L1 -3407 3760 3016 1505 189 28 7 chr3 125132234 125132519 -102392059 + AluJo SINE Alu 1 291 -21 2551 207 16 42 chr3 125132519 125132589 -102391989 - L1MA8 LINE L1 -4151 3016 2946 6004 133 10 5 chr3 125132596 125133835 -102390743 + L1PB2 LINE L1 4902 6144 -7 2316 263 46 76 chr3 125133849 125135547 -102389031 - L1MA8 LINE L1 -4161 3007 1587 359 265 65 40 chr3 125136436 125136753 -102387825 - L1ME LINE L1 -5317 753 432 386 288 46 121 chr3 125136821 125137252 -102387326 - L1ME LINE L1 -5671 399 1 197 347 83 0 chr3 125137404 125137476 -102387102 - L2 LINE L2 -40 3273 3196 7397 128 14 0 chr3 125137572 125138670 -102385908 + L1P LINE L1 3 1115 -5031 222 394 44 29 chr3 125139668 125139805 -102384773 - L2 LINE L2 0 3272 3134 512 271 79 39 chr3 125140450 125140697 -102383881 + L2 LINE L2 2760 3015 -257 261 0 0 0 chr3 125140703 125140732 -102383846 + (TG)n Simple_repeat Simple_repeat 2 30 0 332 254 97 44 chr3 125140748 125140862 -102383716 + L2 LINE L2 3186 3305 -8 21 0 0 0 chr3 125141465 125141486 -102383092 + AT_rich Low_complexity Low_complexity 1 21 0 344 322 29 53 chr3 125141526 125141641 -102382937 - MIR SINE MIR -11 251 142 180 0 0 0 chr3 125141641 125141661 -102382917 + (TTG)n Simple_repeat Simple_repeat 2 21 0 344 322 29 53 chr3 125141661 125141753 -102382825 - MIR SINE MIR -120 142 49 28 29 0 0 chr3 125143161 125143196 -102381382 + AT_rich Low_complexity Low_complexity 1 35 0 291 355 80 22 chr3 125144051 125144189 -102380389 + L2 LINE L2 3102 3247 -25 2353 92 3 0 chr3 125146611 125146915 -102377663 + AluSq SINE Alu 1 305 -8 22 35 0 0 chr3 125147139 125147168 -102377410 + AT_rich Low_complexity Low_complexity 1 29 0 447 358 70 52 chr3 125147468 125147716 -102376862 - L2 LINE L2 -1 3271 3012 321 291 64 29 chr3 125147716 125147888 -102376690 - MER5B DNA MER1_type 0 178 1 447 358 70 52 chr3 125147888 125148024 -102376554 - L2 LINE L2 -260 3012 2880 689 319 209 13 chr3 125148059 125148599 -102375979 - L2 LINE L2 -512 2802 2157 680 278 17 11 chr3 125148655 125148835 -102375743 - MER5A DNA MER1_type 0 189 9 2281 71 0 29 chr3 125149293 125149603 -102374975 - AluY SINE Alu -10 301 1 273 210 0 0 chr3 125150970 125151032 -102373546 - L1MC4 LINE L1 -1327 6715 6654 445 162 0 0 chr3 125151078 125151146 -102373432 - LTR16B LTR ERVL 0 464 397 482 297 96 44 chr3 125151286 125151515 -102373063 - MIR SINE MIR -4 258 18 1626 197 0 17 chr3 125153149 125153449 -102371129 + AluJo SINE Alu 1 295 -17 363 248 116 0 chr3 125153639 125153760 -102370818 + MER103 DNA DNA 31 165 -1 5609 135 10 10 chr3 125153871 125155766 -102368812 - L1PA15 LINE L1 -3 6865 4973 9401 251 25 26 chr3 125155773 125157442 -102367136 - L1PA15 LINE L1 -1969 4880 3170 233 136 136 15 chr3 125157442 125157508 -102367070 + LTR66 LTR ERVL 366 439 -171 9401 251 25 26 chr3 125157508 125158884 -102365694 - L1PA15 LINE L1 -3679 3170 1794 590 281 28 0 chr3 125160312 125160490 -102364088 - MLT1L LTR MaLR 0 615 433 236 330 35 17 chr3 125160579 125160694 -102363884 - MLT1L LTR MaLR -306 309 193 408 248 17 43 chr3 125162587 125162704 -102361874 - L2 LINE L2 -1 3312 3199 572 175 22 26 chr3 125163027 125163187 -102361391 - LTR21B LTR ERV1 0 438 308 2235 148 50 0 chr3 125163904 125164288 -102360290 + MER57A LTR ERV1 1 403 0 1139 162 0 11 chr3 125164387 125164578 -102360000 - MER5A DNA MER1_type 0 189 1 335 269 51 122 chr3 125164586 125164742 -102359836 - MER5B DNA MER1_type 0 178 45 3558 189 92 32 chr3 125164746 125165379 -102359199 + L1MD2 LINE L1 5451 6149 -210 3767 130 48 5 chr3 125165379 125165988 -102358590 + MER41B LTR ERV1 1 635 0 3558 189 92 32 chr3 125165988 125166199 -102358379 + L1MD2 LINE L1 6149 6346 -13 636 248 30 22 chr3 125166354 125166564 -102358014 + L1ME LINE L1 5523 5683 -438 28 0 0 0 chr3 125167306 125167334 -102357244 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 125168743 125168765 -102355813 + AT_rich Low_complexity Low_complexity 1 22 0 2427 165 23 6 chr3 125168830 125169502 -102355076 - L1M2 LINE L1 -651 5661 4974 21 36 0 0 chr3 125169646 125169674 -102354904 + AT_rich Low_complexity Low_complexity 1 28 0 3086 208 22 8 chr3 125169901 125170570 -102354008 - L1M2 LINE L1 -1139 5007 4329 2519 210 63 14 chr3 125170580 125171200 -102353378 + L1MA9 LINE L1 5625 6274 -38 566 205 17 0 chr3 125171387 125171504 -102353074 - MIR SINE MIR -57 205 87 228 154 92 0 chr3 125171584 125171649 -102352929 - MER116 DNA Mariner -5 75 5 2003 147 31 101 chr3 125172010 125172464 -102352114 + MLT1C LTR MaLR 5 426 -41 1835 206 32 0 chr3 125172464 125172919 -102351659 - MLT2B1 LTR ERVL 0 520 1 285 73 0 24 chr3 125172923 125172964 -102351614 + MLT1B LTR MaLR 349 388 -2 466 234 204 6 chr3 125173474 125173641 -102350937 - MIR SINE MIR 0 262 63 2733 187 41 7 chr3 125174360 125174900 -102349678 - MER74A LTR ERVL 0 558 1 25 31 0 0 chr3 125174930 125174962 -102349616 + AT_rich Low_complexity Low_complexity 1 32 0 617 128 184 0 chr3 125174962 125175087 -102349491 - L1PA15 LINE L1 -1 6164 6017 275 177 101 0 chr3 125175109 125175175 -102349403 - FRAM SINE Alu -25 141 71 368 240 0 9 chr3 125175232 125175392 -102349186 + Zaphod DNA AcHobo 3264 3460 -571 196 199 59 51 chr3 125176353 125176465 -102348113 + MIR SINE MIR 93 204 -58 249 215 0 51 chr3 125177240 125177319 -102347259 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 305 333 163 0 chr3 125179328 125179475 -102345103 - MIR SINE MIR -70 192 22 21 0 0 0 chr3 125179613 125179634 -102344944 + AT_rich Low_complexity Low_complexity 1 21 0 542 360 109 36 chr3 125180874 125181838 -102342740 + L2 LINE L2 2226 3257 -15 361 291 36 9 chr3 125181951 125182061 -102342517 + MER94 DNA DNA 21 133 -1 506 250 0 64 chr3 125182136 125182292 -102342286 - Charlie8 DNA MER1_type -2189 228 83 275 285 47 3 chr3 125183096 125183202 -102341376 - MIR SINE MIR -24 184 73 203 381 141 12 chr3 125183769 125184018 -102340560 + L2 LINE L2 2446 2726 -588 337 352 48 0 chr3 125184099 125184309 -102340269 + L1ME LINE L1 5608 5827 -294 357 243 100 146 chr3 125184372 125184783 -102339795 + L1ME1 LINE L1 522 913 -5617 524 283 45 66 chr3 125185111 125185641 -102338937 + L1ME1 LINE L1 1032 1550 -4993 1093 258 33 8 chr3 125185717 125186081 -102338497 + L1ME1 LINE L1 1760 2132 -4408 2172 113 56 6 chr3 125186089 125187133 -102337445 - L1MA2 LINE L1 -10 6294 5149 559 256 47 102 chr3 125187141 125187619 -102336959 + L1ME1 LINE L1 2117 2608 -4043 2169 82 4 0 chr3 125187619 125187922 -102336656 - AluSp SINE Alu 0 308 5 559 256 47 102 chr3 125187922 125188001 -102336577 + L1ME1 LINE L1 2608 2690 -3961 2458 11 0 0 chr3 125188013 125188286 -102336292 + AluYa5 SINE Alu 11 283 -28 4513 265 94 21 chr3 125188405 125189805 -102334773 + L1ME1 LINE L1 2904 4200 -2360 351 0 0 0 chr3 125189805 125189844 -102334734 + (CA)n Simple_repeat Simple_repeat 2 40 0 4513 265 94 21 chr3 125189844 125190319 -102334259 + L1ME1 LINE L1 4200 4639 -1921 2129 128 0 7 chr3 125190319 125190617 -102333961 + AluSx SINE Alu 1 296 -16 4513 265 94 21 chr3 125190617 125192064 -102332514 + L1ME1 LINE L1 4639 6539 -21 367 228 62 62 chr3 125192189 125192334 -102332244 + L1ME4a LINE L1 5976 6120 -1 423 370 40 46 chr3 125192365 125192886 -102331692 + L2 LINE L2 2289 2806 -508 205 195 0 0 chr3 125192905 125192946 -102331632 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 31 88 0 0 chr3 125194171 125194251 -102330327 + AT_rich Low_complexity Low_complexity 1 80 0 397 187 28 37 chr3 125194385 125194492 -102330086 - L1MEc LINE L1 -4281 2115 2010 1286 276 138 18 chr3 125194533 125195304 -102329274 - L1MEc LINE L1 -4460 1936 1074 1790 168 62 19 chr3 125195304 125195673 -102328905 + MLT1B LTR MaLR 1 385 -5 2756 266 43 26 chr3 125195693 125196689 -102327889 - L1MEc LINE L1 -5349 1047 35 230 312 96 32 chr3 125196738 125197174 -102327404 - L1MC/D LINE L1 -2002 5806 5343 24 53 0 0 chr3 125197398 125197436 -102327142 + AT_rich Low_complexity Low_complexity 1 38 0 22 56 0 0 chr3 125197841 125197877 -102326701 + AT_rich Low_complexity Low_complexity 1 36 0 473 287 141 37 chr3 125198012 125198416 -102326162 - MLT1J1 LTR MaLR 0 446 1 1754 266 21 19 chr3 125198562 125199130 -102325448 - L1ME2 LINE L1 -9 6155 5587 987 178 12 66 chr3 125199132 125199373 -102325205 - L1MB8 LINE L1 -14 6164 5937 14666 103 10 5 chr3 125199373 125202312 -102322266 - L1PA7 LINE L1 0 6154 3201 13605 140 16 25 chr3 125202412 125204833 -102319745 - L1PA7 LINE L1 -3142 3004 604 2486 227 34 7 chr3 125204831 125205595 -102318983 - L1MB8 LINE L1 -229 5949 5162 * 3961 153 30 11 chr3 125205596 125206096 -102318482 - L1MA9 LINE L1 0 6312 5790 210 37 0 0 chr3 125206096 125206123 -102318455 + (TG)n Simple_repeat Simple_repeat 2 28 0 3961 153 30 11 chr3 125206123 125206381 -102318197 - L1MA9 LINE L1 -522 5790 5539 818 211 16 5 chr3 125206382 125206576 -102318002 - L1MA9 LINE L1 -1553 4593 4398 3429 199 4 6 chr3 125206589 125207281 -102317297 + L1 LINE L1 3367 4057 -2089 511 114 0 0 chr3 125207655 125207734 -102316844 + L1MA5A LINE L1 6215 6293 -4 444 189 39 7 chr3 125207809 125207926 -102316652 + L1MD3 LINE L1 7520 7827 -150 448 240 140 20 chr3 125208343 125208493 -102316085 + MER5B DNA MER1_type 4 171 -7 399 331 15 8 chr3 125208744 125208877 -102315701 + MIR SINE MIR 20 153 -109 4740 109 0 4 chr3 125211321 125212026 -102312552 - L1PA7 LINE L1 -2251 3895 3194 10286 92 13 0 chr3 125212026 125214279 -102310299 + L1PA7 LINE L1 3904 6164 0 462 311 72 0 chr3 125214684 125214877 -102309701 - MIR SINE MIR -17 245 39 1146 282 33 11 chr3 125215357 125215719 -102308859 + MLT1I LTR MaLR 1 370 -39 1032 215 23 14 chr3 125215900 125216114 -102308464 + MER58A DNA MER1_type 1 216 -8 21 36 0 0 chr3 125217108 125217136 -102307442 + AT_rich Low_complexity Low_complexity 1 28 0 559 250 32 0 chr3 125217376 125217532 -102307046 + L2 LINE L2 2002 2162 -1152 2800 159 9 15 chr3 125217557 125218021 -102306557 + MLT1C LTR MaLR 6 466 -1 2036 277 29 13 chr3 125218022 125218635 -102305943 + L2 LINE L2 2175 2797 -517 378 264 55 0 chr3 125218757 125218848 -102305730 + MIR3 SINE MIR 106 201 -7 24 32 0 0 chr3 125223537 125223568 -102301010 + AT_rich Low_complexity Low_complexity 1 31 0 321 190 127 25 chr3 125223933 125224012 -102300566 - MIR3 SINE MIR -3 205 119 1983 97 0 4 chr3 125224515 125224794 -102299784 - Tigger2 DNA MER2_type -99 2619 2342 9043 74 105 6 chr3 125224895 125226241 -102298337 - L1P LINE L1 -4667 1479 1 484 165 0 0 chr3 125226246 125226331 -102298247 - L1PA5 LINE L1 -9 6145 6061 289 391 23 23 chr3 125226504 125226637 -102297941 + MER91A DNA MER1_type 31 163 -33 894 211 11 6 chr3 125227044 125227219 -102297359 - MER5A DNA MER1_type 0 189 14 200 125 0 25 chr3 125227247 125227287 -102297291 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 22298 54 47 3 chr3 125227924 125230859 -102293719 + L1P LINE L1 2 3063 -3083 1181 67 0 0 chr3 125230959 125231108 -102293470 + AluY SINE Alu 142 290 -21 2448 62 0 3 chr3 125231108 125231413 -102293165 + AluY SINE Alu 1 304 -7 411 271 78 13 chr3 125231760 125231948 -102292630 - MIR SINE MIR -27 235 36 21 71 0 0 chr3 125232119 125232161 -102292417 + AT_rich Low_complexity Low_complexity 1 42 0 388 298 58 0 chr3 125233745 125233849 -102290729 + MIR3 SINE MIR 59 168 -40 253 273 0 15 chr3 125235120 125235186 -102289392 - MLT1I LTR MaLR 0 409 345 369 250 23 70 chr3 125235244 125235372 -102289206 - MLT1I LTR MaLR -172 237 116 224 206 62 158 chr3 125235749 125235772 -102288806 + MIR SINE MIR 124 148 -114 2372 158 11 38 chr3 125235772 125236216 -102288362 + Tigger2a DNA MER2_type 2 433 -1 224 206 62 158 chr3 125236216 125236230 -102288348 + MIR SINE MIR 148 162 -100 1616 179 21 61 chr3 125236230 125236609 -102287969 - MLT1A1 LTR MaLR 0 365 2 224 206 62 158 chr3 125236609 125236643 -102287935 + MIR SINE MIR 162 198 -64 252 0 0 0 chr3 125236643 125236671 -102287907 + (TTG)n Simple_repeat Simple_repeat 3 30 0 2051 103 3 35 chr3 125236671 125236961 -102287617 - AluSp SINE Alu -32 281 1 224 206 62 158 chr3 125236961 125237032 -102287546 + MIR SINE MIR 196 255 -7 1714 188 16 38 chr3 125238030 125238507 -102286071 - MLT2B2 LTR ERVL 0 515 1 472 328 11 11 chr3 125238747 125238921 -102285657 + L3 LINE CR1 631 804 -773 188 310 133 26 chr3 125238943 125239056 -102285522 - L2 LINE L2 -1 3271 3147 275 307 23 11 chr3 125239063 125239151 -102285427 - MIR SINE MIR -55 153 65 424 259 98 0 chr3 125240420 125240532 -102284046 + MER94 DNA DNA 12 134 0 509 338 102 52 chr3 125240544 125240649 -102283929 + L3 LINE CR1 1129 1227 -350 273 75 0 0 chr3 125240649 125240689 -102283889 + (TG)n Simple_repeat Simple_repeat 1 40 0 509 338 102 52 chr3 125240689 125240985 -102283593 + L3 LINE CR1 1227 1550 -27 419 349 61 33 chr3 125241905 125242117 -102282461 - MIR SINE MIR -29 233 16 1067 255 81 92 chr3 125242628 125243095 -102281483 + HERVL40 LTR ERVL 109 570 -4960 1955 309 41 18 chr3 125243137 125243813 -102280765 + HERVL40 LTR ERVL 566 1257 -4273 280 264 44 11 chr3 125243982 125244073 -102280505 + HERVL40 LTR ERVL 1662 1755 -3775 1884 270 60 27 chr3 125244263 125244885 -102279693 + HERVL40 LTR ERVL 1969 2610 -2920 269 156 219 0 chr3 125244885 125244949 -102279629 + LTR40b LTR ERVL 385 462 0 21 36 0 0 chr3 125245255 125245283 -102279295 + AT_rich Low_complexity Low_complexity 1 28 0 250 239 0 30 chr3 125247651 125247718 -102276860 - MIR SINE MIR -10 252 188 191 295 16 16 chr3 125247758 125247819 -102276759 - MIR SINE MIR -170 92 32 1284 84 18 0 chr3 125248965 125249132 -102275446 - AluY SINE Alu -14 297 128 529 280 110 6 chr3 125250575 125250757 -102273821 - MIR SINE MIR -4 258 58 1936 127 27 7 chr3 125251122 125251421 -102273157 - AluSx SINE Alu -3 309 5 240 364 0 0 chr3 125251556 125251633 -102272945 + MIR3 SINE MIR 98 174 -34 320 177 0 25 chr3 125251714 125251793 -102272785 + GA-rich Low_complexity Low_complexity 4 80 0 180 0 0 0 chr3 125252528 125252548 -102272030 + (CA)n Simple_repeat Simple_repeat 2 21 0 237 217 29 14 chr3 125253288 125253357 -102271221 - MIR SINE MIR -105 157 88 25 51 0 0 chr3 125253813 125253852 -102270726 + AT_rich Low_complexity Low_complexity 1 39 0 1969 163 14 3 chr3 125254841 125255185 -102269393 - MER7A DNA MER2_type 0 346 1 21 0 0 0 chr3 125255232 125255253 -102269325 + AT_rich Low_complexity Low_complexity 1 21 0 508 304 37 55 chr3 125255535 125255808 -102268770 + L2 LINE L2 3005 3272 0 21 36 0 0 chr3 125257109 125257137 -102267441 + AT_rich Low_complexity Low_complexity 1 28 0 2464 124 45 54 chr3 125257360 125257875 -102266703 + L1MA9 LINE L1 5424 5933 -379 1202 212 174 9 chr3 125258040 125258380 -102266198 - MSTD LTR MaLR 0 396 1 252 254 0 0 chr3 125259402 125259473 -102265105 + (TA)n Simple_repeat Simple_repeat 2 72 0 201 232 200 42 chr3 125259594 125259689 -102264889 - L2 LINE L2 -497 2817 2708 1445 141 28 0 chr3 125259779 125260028 -102264550 - Tigger2 DNA MER2_type 0 2718 2463 4124 171 9 4 chr3 125260084 125260837 -102263741 - Tigger2 DNA MER2_type -1961 757 1 1151 210 95 63 chr3 125260955 125261398 -102263180 - MLT1C LTR MaLR -2 465 9 366 291 64 0 chr3 125261551 125261661 -102262917 + MER94 DNA DNA 18 134 0 1103 72 14 0 chr3 125262583 125262721 -102261857 + AluSc SINE Alu 159 298 -11 2402 223 31 93 chr3 125263120 125264056 -102260522 - L1MD2 LINE L1 -227 6526 5649 4336 247 57 38 chr3 125264080 125265912 -102258666 - L1MD2 LINE L1 -1677 4863 2996 1037 250 19 92 chr3 125265970 125266610 -102257968 - L1MD2 LINE L1 -5018 1525 933 269 295 76 0 chr3 125267174 125267279 -102257299 - L1MD2 LINE L1 -6322 218 106 2467 106 31 14 chr3 125267578 125267936 -102256642 + THE1B LTR MaLR 1 364 0 489 276 37 0 chr3 125267936 125268070 -102256508 - MIR SINE MIR -99 163 25 1791 77 0 0 chr3 125268522 125268756 -102255822 - L1PA7 LINE L1 -13 6141 5908 496 292 5 78 chr3 125269149 125269341 -102255237 + MER5B DNA MER1_type 1 178 0 279 0 0 0 chr3 125269727 125269758 -102254820 + (TC)n Simple_repeat Simple_repeat 2 32 0 238 132 38 0 chr3 125269783 125269836 -102254742 + (TA)n Simple_repeat Simple_repeat 2 56 0 1493 217 125 43 chr3 125272397 125272467 -102252111 + MLT1G1 LTR MaLR 1 64 -531 2317 118 6 14 chr3 125272467 125272824 -102251754 + THE1A LTR MaLR 2 355 0 1493 217 125 43 chr3 125272824 125273288 -102251290 + MLT1G1 LTR MaLR 64 579 -16 242 273 0 102 chr3 125273683 125273771 -102250807 - L2 LINE L2 0 3272 3194 1455 174 98 4 chr3 125273814 125274078 -102250500 + AluJb SINE Alu 1 289 -23 684 263 79 33 chr3 125274358 125274598 -102249980 - MIR SINE MIR -10 252 2 200 294 0 0 chr3 125275593 125275644 -102248934 + L2 LINE L2 3000 3050 -222 12200 52 78 9 chr3 125276499 125278229 -102246349 + L1P LINE L1 3 1851 -4295 205 86 0 29 chr3 125278721 125278756 -102245822 + (TTTTTA)n Simple_repeat Simple_repeat 1 34 0 2446 81 3 0 chr3 125279222 125279530 -102245048 + AluSc SINE Alu 1 309 0 2388 80 0 3 chr3 125280371 125280673 -102243905 - AluY SINE Alu -10 301 1 340 298 56 62 chr3 125281646 125281807 -102242771 + MER5A DNA MER1_type 28 187 -2 234 351 40 58 chr3 125281651 125281825 -102242753 - MER5A DNA MER1_type -18 171 1 * 552 286 6 65 chr3 125282220 125282306 -102242272 - MIR3 SINE MIR -34 174 101 1032 236 9 0 chr3 125282306 125282526 -102242052 - MER58A DNA MER1_type -2 222 1 552 286 6 65 chr3 125282526 125282607 -102241971 - MIR3 SINE MIR -107 101 17 223 132 26 0 chr3 125283235 125283273 -102241305 + L2 LINE L2 3265 3303 -10 193 216 39 0 chr3 125283419 125283470 -102241108 + L2 LINE L2 3220 3272 0 310 322 208 33 chr3 125283901 125284400 -102240178 + L2 LINE L2 2665 3262 -10 521 208 67 0 chr3 125285713 125285833 -102238745 - MER5A DNA MER1_type -1 188 61 5854 64 3 0 chr3 125285846 125286623 -102237955 - L1PA8 LINE L1 -1 6171 5393 2904 95 11 0 chr3 125286620 125287073 -102237505 + L1PA8 LINE L1 4932 5389 -757 * 325 215 92 0 chr3 125287073 125287138 -102237440 - MER5A DNA MER1_type -118 71 1 332 264 114 30 chr3 125288926 125289127 -102235451 + L1ME3A LINE L1 5634 5851 -319 446 282 102 51 chr3 125289380 125289596 -102234982 + MIR SINE MIR 32 258 -4 308 24 24 0 chr3 125289672 125289713 -102234865 + (CA)n Simple_repeat Simple_repeat 2 43 0 268 220 0 0 chr3 125292223 125292273 -102232305 - L2 LINE L2 -5 3308 3259 548 217 161 0 chr3 125292525 125292590 -102231988 - MER5A DNA MER1_type -2 187 134 2070 105 0 11 chr3 125292590 125292875 -102231703 - AluSc SINE Alu -10 299 18 548 217 161 0 chr3 125292875 125292970 -102231608 - MER5A DNA MER1_type -55 134 1 227 30 0 30 chr3 125293905 125293938 -102230640 + (TAA)n Simple_repeat Simple_repeat 2 33 0 227 374 88 0 chr3 125294696 125294750 -102229828 - L2 LINE L2 -28 3244 3196 201 74 0 0 chr3 125294750 125294777 -102229801 + (CAAA)n Simple_repeat Simple_repeat 4 30 0 227 374 88 0 chr3 125294777 125294813 -102229765 - L2 LINE L2 -76 3196 3146 706 214 65 44 chr3 125295274 125295568 -102229010 - L1ME4a LINE L1 -2 6119 5820 208 367 10 20 chr3 125295927 125296025 -102228553 + L3 LINE CR1 823 919 -658 297 275 28 99 chr3 125296251 125296393 -102228185 - MIR SINE MIR -78 184 53 1042 311 29 37 chr3 125296446 125296902 -102227676 + L3 LINE CR1 1019 1470 -107 481 278 156 23 chr3 125297162 125297335 -102227243 - MIR SINE MIR -65 197 2 17833 39 8 0 chr3 125299381 125302367 -102222211 - L1PA3 LINE L1 0 6155 3153 251 188 43 14 chr3 125302741 125302810 -102221768 - AluJ/FLAM SINE Alu -231 71 1 428 227 228 70 chr3 125302810 125303480 -102221098 - HAL1 LINE L1 -186 2321 1546 7046 39 7 43 chr3 125303483 125304768 -102219810 + L1PA5 LINE L1 4894 6145 -9 35806 32 10 1 chr3 125304774 125310803 -102213775 + L1PA2 LINE L1 2 6152 -3 35 24 0 0 chr3 125310843 125310885 -102213693 + AT_rich Low_complexity Low_complexity 1 42 0 818 211 0 88 chr3 125311083 125311208 -102213370 - MER45A DNA AcHobo -1404 177 73 2269 104 0 22 chr3 125311208 125311525 -102213053 - AluSg SINE Alu 0 310 1 818 211 0 88 chr3 125311525 125311593 -102212985 - MER45A DNA AcHobo -1508 73 1 1303 162 26 9 chr3 125312361 125312590 -102211988 - MER46A DNA MER2_type -2 234 2 262 250 109 61 chr3 125312695 125312853 -102211725 + MIR SINE MIR 52 262 0 21 0 0 0 chr3 125312874 125312895 -102211683 + AT_rich Low_complexity Low_complexity 1 21 0 1102 230 102 0 chr3 125313038 125313312 -102211266 + MER58B DNA MER1_type 38 339 -2 307 336 62 34 chr3 125314188 125314334 -102210244 - MER91A DNA MER1_type -45 151 2 900 288 13 20 chr3 125314426 125314725 -102209853 + L1MC4a LINE L1 5480 5776 -2032 1304 209 28 0 chr3 125314728 125315010 -102209568 - MER58B DNA MER1_type -6 335 46 636 215 98 35 chr3 125315011 125315267 -102209311 + L1MC4a LINE L1 5769 6040 -1768 628 285 64 32 chr3 125315385 125315634 -102208944 + MER102a DNA MER1_type 74 330 0 448 347 57 22 chr3 125315919 125316099 -102208479 - MIR3 SINE MIR -21 187 1 1154 128 76 24 chr3 125316467 125316718 -102207860 + L1MC2 LINE L1 6079 6342 -2 201 147 0 0 chr3 125317384 125317418 -102207160 + (TTCTCC)n Simple_repeat Simple_repeat 3 36 0 274 290 14 0 chr3 125317613 125317682 -102206896 - MIR3 SINE MIR -51 157 88 863 95 43 0 chr3 125318606 125318722 -102205856 - AluSq/x SINE Alu -192 121 1 6776 139 33 14 chr3 125318861 125320069 -102204509 + Tigger3b DNA MER2_type 1 1231 0 3868 203 36 41 chr3 125320480 125321691 -102202887 - L1M4 LINE L1 -704 5480 4265 2246 98 0 43 chr3 125321986 125322313 -102202265 - AluSq SINE Alu 0 313 1 225 214 127 24 chr3 125322584 125322710 -102201868 - HsTC2a DNA Tc2 -3 739 601 269 203 149 112 chr3 125322770 125323065 -102201513 - HsTC2a DNA Tc2 -87 655 350 2198 209 79 19 chr3 125323068 125323585 -102200993 - MER68 LTR ERV1 -14 548 1 409 240 107 49 chr3 125323595 125323784 -102200794 - HsTC2a DNA Tc2 -400 344 131 1995 130 60 23 chr3 125324164 125324511 -102200067 + THE1B LTR MaLR 1 360 -4 11369 91 17 9 chr3 125324515 125326082 -102198496 + THE1B-int LTR MaLR 1 1580 0 2118 108 51 70 chr3 125326082 125326453 -102198125 + THE1B LTR MaLR 1 364 0 214 300 0 0 chr3 125326607 125326657 -102197921 - MIR3 SINE MIR -49 159 110 927 248 144 33 chr3 125326854 125327250 -102197328 - MLT1D LTR MaLR 0 505 66 1599 191 39 63 chr3 125327351 125327471 -102197107 - MLT1D LTR MaLR -66 439 318 1572 199 39 3 chr3 125327471 125327757 -102196821 - AluJo SINE Alu -16 296 1 1599 191 39 63 chr3 125327757 125328077 -102196501 - MLT1D LTR MaLR -187 318 10 1120 176 15 29 chr3 125328274 125328478 -102196100 + AluJo SINE Alu 86 286 -26 416 306 206 0 chr3 125328530 125328739 -102195839 - MIR SINE MIR -8 254 3 351 310 82 53 chr3 125329592 125329963 -102194615 + L2 LINE L2 2709 3091 -181 1114 188 20 8 chr3 125330325 125330575 -102194003 - L1MA4 LINE L1 -6 6294 6042 764 264 305 19 chr3 125330936 125331530 -102193048 - LTR50 LTR ERVL -3 665 2 1362 186 7 54 chr3 125331744 125331974 -102192604 - AluJo SINE Alu 0 319 106 2521 92 43 0 chr3 125331974 125332323 -102192255 + THE1B LTR MaLR 1 364 0 1362 186 7 54 chr3 125332323 125332425 -102192153 - AluJo SINE Alu -213 106 1 492 306 100 19 chr3 125332437 125332708 -102191870 - L2 LINE L2 -71 3242 2950 204 296 80 0 chr3 125333724 125333812 -102190766 + MIR SINE MIR 70 164 -98 418 285 95 93 chr3 125336102 125336681 -102187897 - L1M2 LINE L1 -5743 1106 527 23 54 0 0 chr3 125336757 125336794 -102187784 + GC_rich Low_complexity Low_complexity 1 37 0 189 0 0 0 chr3 125337412 125337433 -102187145 + (A)n Simple_repeat Simple_repeat 1 21 0 198 192 0 58 chr3 125339321 125339373 -102185205 + L3 LINE CR1 1529 1577 0 480 254 57 36 chr3 125339742 125339935 -102184643 + MIR SINE MIR 65 261 -1 1978 134 0 20 chr3 125341073 125341378 -102183200 + AluSx SINE Alu 1 299 -13 21 36 0 0 chr3 125341527 125341555 -102183023 + AT_rich Low_complexity Low_complexity 1 28 0 184 264 44 110 chr3 125341915 125342006 -102182572 + MER5A DNA MER1_type 37 121 -68 223 164 262 16 chr3 125342150 125342211 -102182367 + L2 LINE L2 3226 3301 -12 1140 203 75 20 chr3 125342248 125342554 -102182024 - MER33 DNA MER1_type 0 324 2 207 326 151 0 chr3 125342615 125342701 -102181877 + L2 LINE L2 2956 3054 -218 301 240 32 56 chr3 125342827 125342952 -102181626 - MER103 DNA DNA 0 166 45 23 78 0 0 chr3 125344694 125344745 -102179833 + AT_rich Low_complexity Low_complexity 1 51 0 838 204 115 5 chr3 125345385 125345498 -102179080 + AluJo SINE Alu 1 100 -212 189 0 0 0 chr3 125345498 125345519 -102179059 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 838 204 115 5 chr3 125345519 125345596 -102178982 + AluJo SINE Alu 100 212 -100 826 272 56 31 chr3 125345702 125346025 -102178553 + MLT1A2 LTR MaLR 36 366 -8 25 0 0 0 chr3 125346349 125346374 -102178204 + AT_rich Low_complexity Low_complexity 1 25 0 253 222 204 0 chr3 125347331 125347439 -102177139 + MIR SINE MIR 82 211 -51 516 138 11 43 chr3 125348501 125348595 -102175983 - Charlie3 DNA MER1_type 0 2712 2622 1500 203 122 41 chr3 125348864 125349282 -102175296 - MLT1C LTR MaLR -15 452 1 1966 247 147 35 chr3 125349427 125351278 -102173300 - L1ME3A LINE L1 -5 6165 4099 195 286 44 33 chr3 125351625 125351716 -102172862 - L3 LINE CR1 -343 1234 1143 273 237 114 26 chr3 125352235 125352349 -102172229 - MER94 DNA DNA -6 128 5 1586 136 0 15 chr3 125353280 125353544 -102171034 + Tigger4(Zombi) DNA MER2_type 2472 2731 0 35 92 0 0 chr3 125353597 125353695 -102170883 + AT_rich Low_complexity Low_complexity 1 98 0 310 319 217 0 chr3 125353944 125354082 -102170496 + MIR3 SINE MIR 34 201 -7 647 195 152 18 chr3 125354530 125354694 -102169884 + MER3 DNA MER1_type 14 199 -10 201 333 35 0 chr3 125354892 125354949 -102169629 + L2 LINE L2 3005 3063 -209 187 293 131 20 chr3 125354963 125355062 -102169516 + MIR SINE MIR 67 176 -86 606 284 169 11 chr3 125355202 125355480 -102169098 + L2 LINE L2 859 1180 -2134 3692 239 37 41 chr3 125355515 125356765 -102167813 - L1M4 LINE L1 -937 5209 3965 2133 193 114 34 chr3 125356746 125357239 -102167339 - L1ME1 LINE L1 -326 5909 5346 * 1777 179 3 10 chr3 125357239 125357546 -102167032 - AluJo SINE Alu -7 305 1 2133 193 114 34 chr3 125357546 125357786 -102166792 - L1ME1 LINE L1 -889 5346 5127 1441 214 52 85 chr3 125357783 125358056 -102166522 - L1ME1 LINE L1 -1481 4734 4488 * 1806 169 33 0 chr3 125358056 125358358 -102166220 - AluJb SINE Alu 0 312 1 1441 214 52 85 chr3 125358358 125358663 -102165915 - L1ME1 LINE L1 -1727 4488 4175 238 256 81 0 chr3 125358769 125358855 -102165723 - L1ME1 LINE L1 -6296 100 8 359 298 179 46 chr3 125358877 125359162 -102165416 + L2 LINE L2 1911 2233 -1081 258 250 16 0 chr3 125359159 125359223 -102165355 + L2 LINE L2 3248 3312 -1 * 21 36 0 0 chr3 125361145 125361173 -102163405 + AT_rich Low_complexity Low_complexity 1 28 0 2056 167 60 20 chr3 125361468 125361869 -102162709 - MSTB LTR MaLR -5 421 5 1498 223 37 28 chr3 125361871 125362225 -102162353 - MLT1A2 LTR MaLR -14 360 4 320 285 57 16 chr3 125362726 125362849 -102161729 - L1M4 LINE L1 -1527 4619 4492 241 316 15 52 chr3 125364101 125364237 -102160341 - HAL1b LINE L1 -819 529 399 1075 224 0 26 chr3 125364426 125364654 -102159924 - MLT1E LTR MaLR 0 593 372 488 81 14 0 chr3 125364786 125364860 -102159718 + (TG)n Simple_repeat Simple_repeat 2 76 0 26 30 0 0 chr3 125365508 125365541 -102159037 + AT_rich Low_complexity Low_complexity 1 33 0 234 202 165 37 chr3 125366412 125366521 -102158057 + LTR16A LTR ERVL 320 442 -8 1837 141 4 0 chr3 125366808 125367104 -102157474 + AluSx SINE Alu 13 309 0 1147 214 0 40 chr3 125367842 125368090 -102156488 - MER8 DNA MER2_type 0 239 2 734 173 77 104 chr3 125368103 125368323 -102156255 - MER20 DNA MER1_type -1 218 5 651 237 167 13 chr3 125368538 125368694 -102155884 + MER5A DNA MER1_type 10 189 0 568 235 30 0 chr3 125369411 125369543 -102155035 - MER105 DNA DNA -42 162 27 539 271 107 84 chr3 125369692 125370385 -102154193 + L1ME3A LINE L1 5223 5949 -221 287 286 141 0 chr3 125370757 125370949 -102153629 + L1MEd LINE L1 885 1103 -5016 362 21 21 0 chr3 125371343 125371390 -102153188 + (TA)n Simple_repeat Simple_repeat 1 48 0 23 0 0 0 chr3 125371724 125371747 -102152831 + AT_rich Low_complexity Low_complexity 1 23 0 2003 100 0 53 chr3 125372424 125372724 -102151854 - AluSc SINE Alu -25 284 1 2323 69 0 35 chr3 125374088 125374407 -102150171 - AluY SINE Alu -3 308 1 196 254 0 18 chr3 125374427 125374482 -102150096 + L2 LINE L2 3217 3270 -2 255 227 40 73 chr3 125375372 125375522 -102149056 - HAL1 LINE L1 -1476 1031 887 472 168 11 11 chr3 125375964 125376059 -102148519 - MER20 DNA MER1_type -6 213 119 302 225 87 121 chr3 125376099 125376272 -102148306 - HAL1 LINE L1 -2336 171 5 276 273 136 39 chr3 125376370 125376524 -102148054 + MIR SINE MIR 37 205 -57 264 253 121 50 chr3 125377009 125377108 -102147470 + L2 LINE L2 3208 3313 0 2297 106 0 0 chr3 125377189 125377501 -102147077 - AluSx SINE Alu 0 312 1 27 0 0 0 chr3 125378060 125378087 -102146491 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr3 125379204 125379233 -102145345 + AT_rich Low_complexity Low_complexity 1 29 0 284 340 154 12 chr3 125379470 125379632 -102144946 + L2 LINE L2 3105 3289 -24 1857 146 7 26 chr3 125379737 125380039 -102144539 - AluJb SINE Alu -16 296 1 2039 109 48 7 chr3 125380229 125380523 -102144055 + AluSx SINE Alu 3 308 -4 2216 274 46 55 chr3 125380566 125381675 -102142903 + L2 LINE L2 2225 3313 0 1964 136 7 3 chr3 125381826 125382121 -102142457 - AluSx SINE Alu -15 297 2 2317 86 0 3 chr3 125382127 125382428 -102142150 - AluY SINE Alu -11 300 1 29 70 0 0 chr3 125382711 125382768 -102141810 + AT_rich Low_complexity Low_complexity 1 57 0 26 64 0 0 chr3 125384038 125384085 -102140493 + AT_rich Low_complexity Low_complexity 1 47 0 23 33 0 0 chr3 125385131 125385161 -102139417 + AT_rich Low_complexity Low_complexity 1 30 0 33 25 0 0 chr3 125386851 125386891 -102137687 + AT_rich Low_complexity Low_complexity 1 40 0 25 31 0 0 chr3 125387808 125387840 -102136738 + AT_rich Low_complexity Low_complexity 1 32 0 307 55 18 18 chr3 125389564 125389619 -102134959 + (TTTTG)n Simple_repeat Simple_repeat 2 56 0 219 69 0 0 chr3 125389920 125389949 -102134629 + (T)n Simple_repeat Simple_repeat 1 29 0 741 82 172 0 chr3 125389959 125390081 -102134497 - L1PA11 LINE L1 -2 6172 6030 1535 224 169 26 chr3 125391158 125391778 -102132800 - L1MC5 LINE L1 -61 7900 7192 580 261 35 5 chr3 125392116 125392315 -102132263 - Charlie7 DNA MER1_type -249 2363 2159 651 258 73 53 chr3 125392351 125392692 -102131886 - Charlie7 DNA MER1_type -1860 752 405 239 333 0 33 chr3 125392703 125392793 -102131785 + Charlie7 DNA MER1_type 124 210 -2402 306 339 84 31 chr3 125392825 125393052 -102131526 - Charlie7 DNA MER1_type -2245 367 129 293 247 41 27 chr3 125393175 125393248 -102131330 + L2 LINE L2 3193 3266 -6 26 82 0 0 chr3 125393590 125393651 -102130927 + AT_rich Low_complexity Low_complexity 1 61 0 221 156 0 44 chr3 125395134 125395179 -102129399 + MIR SINE MIR 68 110 -152 201 365 40 0 chr3 125395977 125396051 -102128527 + MIR SINE MIR 65 141 -121 31 26 0 0 chr3 125396524 125396562 -102128016 + AT_rich Low_complexity Low_complexity 1 38 0 25 31 0 0 chr3 125396631 125396663 -102127915 + AT_rich Low_complexity Low_complexity 1 32 0 205 330 0 40 chr3 125397787 125397887 -102126691 + MIR SINE MIR 103 198 -64 299 294 39 39 chr3 125398062 125398164 -102126414 + MIR SINE MIR 42 143 -65 2725 7 0 0 chr3 125398308 125398608 -102125970 + AluYa5 SINE Alu 1 300 -11 347 292 69 35 chr3 125399938 125400082 -102124496 - L2 LINE L2 0 3313 3165 10075 238 38 32 chr3 125400187 125404092 -102120486 + L1MA4A LINE L1 10 3938 -2910 2383 97 20 12 chr3 125404094 125404435 -102120143 - THE1C LTR MaLR 0 375 32 1662 170 50 45 chr3 125404435 125404794 -102119784 + THE1C LTR MaLR 15 375 0 9917 112 54 3 chr3 125404794 125406297 -102118281 + THE1B-int LTR MaLR 1 1580 0 1827 159 39 39 chr3 125406297 125406661 -102117917 + THE1B LTR MaLR 1 364 0 6638 161 25 18 chr3 125406723 125407502 -102117076 + L1MA4A LINE L1 4477 5249 -1756 2094 148 36 21 chr3 125407502 125407834 -102116744 + MER1B DNA MER1_type 1 337 0 6638 161 25 18 chr3 125407834 125408485 -102116093 + L1MA4A LINE L1 5249 5894 -1111 1768 176 7 10 chr3 125408485 125408786 -102115792 - AluJo SINE Alu -12 300 1 6638 161 25 18 chr3 125408786 125409863 -102114715 + L1MA4A LINE L1 5894 6998 -7 30 0 0 0 chr3 125409876 125409906 -102114672 + AT_rich Low_complexity Low_complexity 1 30 0 287 296 151 29 chr3 125410501 125410673 -102113905 - MIR SINE MIR -50 212 20 844 211 191 92 chr3 125411076 125411719 -102112859 + MER39 LTR ERV1 1 707 0 377 337 151 17 chr3 125413218 125413568 -102111010 + L2 LINE L2 1157 1553 -1761 1282 267 46 3 chr3 125413805 125414194 -102110384 - L1MC4a LINE L1 -1881 5927 5522 3873 136 21 21 chr3 125414194 125414847 -102109731 - MER39B LTR ERV1 0 653 1 309 257 143 9 chr3 125414899 125415004 -102109574 - L1MC4a LINE L1 -2377 5431 5313 253 329 51 18 chr3 125415209 125415598 -102108980 - L1MC4a LINE L1 -1653 4493 4077 196 349 60 66 chr3 125415683 125415764 -102108814 + L2 LINE L2 1705 1785 -1529 2576 137 30 23 chr3 125415764 125416195 -102108383 + Tigger2a DNA MER2_type 1 434 0 196 349 60 66 chr3 125416195 125416279 -102108299 + L2 LINE L2 1785 1869 -1445 556 304 30 57 chr3 125416337 125416636 -102107942 + LTR67 LTR ERVL 244 534 -23 1155 353 123 6 chr3 125416666 125417474 -102107104 + L2 LINE L2 1958 2859 -455 387 0 0 0 chr3 125417788 125417831 -102106747 + (CA)n Simple_repeat Simple_repeat 2 44 0 281 353 109 28 chr3 125417861 125418144 -102106434 + L2 LINE L2 3005 3310 -3 2744 199 21 21 chr3 125418315 125418849 -102105729 + MLT2B3 LTR ERVL 1 534 -20 215 175 18 0 chr3 125418855 125418912 -102105666 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 340 164 0 0 chr3 125418914 125418969 -102105609 + MLT2B1 LTR ERVL 466 520 0 765 164 89 14 chr3 125419219 125419365 -102105213 + AluJo SINE Alu 23 179 -133 2778 136 57 97 chr3 125419830 125420449 -102104129 + LTR14B LTR ERVK 15 608 0 284 250 86 35 chr3 125420469 125420585 -102103993 - L2 LINE L2 -1882 1432 1311 30313 122 8 58 chr3 125421398 125427873 -102096705 + L1PA7 LINE L1 9 6153 -1 350 152 76 0 chr3 125427940 125428006 -102096572 - MLT1D LTR MaLR 0 505 435 214 146 0 42 chr3 125428920 125428968 -102095610 + (TTTTG)n Simple_repeat Simple_repeat 3 48 0 409 283 136 28 chr3 125429356 125429734 -102094844 - L1 LINE L1 -1105 5041 4616 369 0 0 0 chr3 125429834 125429875 -102094703 + (TG)n Simple_repeat Simple_repeat 2 42 0 1528 223 156 6 chr3 125430898 125431386 -102093192 + Charlie1 DNA MER1_type 2201 2761 0 385 320 10 0 chr3 125431389 125431489 -102093089 + L2 LINE L2 3192 3292 -21 493 149 74 58 chr3 125431489 125431610 -102092968 - L1MA8 LINE L1 -2 6289 6167 333 268 109 7 chr3 125431786 125431924 -102092654 + L1ME4a LINE L1 5938 6089 -32 1199 290 108 37 chr3 125432216 125432913 -102091665 - L1MC4a LINE L1 -1750 6058 5313 250 316 61 0 chr3 125433839 125433937 -102090641 + MIR SINE MIR 138 241 -21 280 269 167 9 chr3 125434187 125434295 -102090283 - L2 LINE L2 0 3313 3189 2900 204 69 46 chr3 125434346 125435309 -102089269 - L1ME1 LINE L1 -5 6161 5179 2198 87 3 7 chr3 125435309 125435597 -102088981 - AluSc SINE Alu -22 287 1 2900 204 69 46 chr3 125435597 125435644 -102088934 - L1ME1 LINE L1 -987 5179 5135 21 82 0 0 chr3 125436639 125436688 -102087890 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr3 125436864 125436900 -102087678 + AT_rich Low_complexity Low_complexity 1 36 0 380 339 118 31 chr3 125437879 125438133 -102086445 + L3 LINE CR1 1283 1558 -19 876 200 108 8 chr3 125439084 125439432 -102085146 + L1ME LINE L1 5106 5484 -682 208 135 0 0 chr3 125439834 125439871 -102084707 + (T)n Simple_repeat Simple_repeat 1 37 0 520 295 81 124 chr3 125439946 125440552 -102084026 - L3 LINE CR1 -4 1573 994 2305 80 0 0 chr3 125441086 125441375 -102083203 + AluY SINE Alu 1 289 -22 1004 291 83 55 chr3 125441616 125441816 -102082762 - ERVL LTR ERVL -4199 1565 1372 1824 151 90 6 chr3 125441816 125442127 -102082451 + MER1B DNA MER1_type 1 337 0 1004 291 83 55 chr3 125442127 125442469 -102082109 - ERVL LTR ERVL -4392 1372 1008 2239 106 80 9 chr3 125442618 125442968 -102081610 + THE1C LTR MaLR 1 375 0 509 255 13 33 chr3 125443130 125443283 -102081295 - MLT1H1-int LTR MaLR -1221 150 1 637 277 130 80 chr3 125443283 125443843 -102080735 - MLT1H1 LTR MaLR -2 584 6 25 83 0 0 chr3 125444605 125444665 -102079913 + AT_rich Low_complexity Low_complexity 1 60 0 1705 191 124 12 chr3 125444849 125445253 -102079325 - MLT1C LTR MaLR -18 449 1 2310 64 11 0 chr3 125445391 125445706 -102078872 - AluY SINE Alu 0 318 1 606 273 120 60 chr3 125446340 125446724 -102077854 - MLT1I LTR MaLR 0 409 3 228 67 0 0 chr3 125447273 125447303 -102077275 + (TAGG)n Simple_repeat Simple_repeat 2 31 0 187 368 29 0 chr3 125447952 125448020 -102076558 - MIR SINE MIR -173 89 20 284 348 162 50 chr3 125449214 125449553 -102075025 - L2 LINE L2 -33 3239 2863 214 175 0 0 chr3 125450085 125450125 -102074453 + (TAGA)n Simple_repeat Simple_repeat 4 43 0 1919 132 28 14 chr3 125453324 125453613 -102070965 + AluSx SINE Alu 1 293 -19 2297 259 33 33 chr3 125453827 125454461 -102070117 + L1MA7 LINE L1 11 644 -5637 1826 174 58 26 chr3 125454471 125454886 -102069692 + L1MA7 LINE L1 1018 1445 -4836 4226 256 69 38 chr3 125454888 125458333 -102066245 + L1PA15-16 LINE L1 9 3585 -3264 586 148 30 0 chr3 125458330 125458431 -102066147 + L1MA7 LINE L1 3714 3817 -2533 * 230 204 0 0 chr3 125458433 125458477 -102066101 + MSTA LTR MaLR 1 44 -384 2000 136 7 3 chr3 125458485 125458780 -102065798 + AluSq SINE Alu 1 296 -17 270 81 0 0 chr3 125458780 125458817 -102065761 + (GGGGA)n Simple_repeat Simple_repeat 1 37 0 2189 169 38 0 chr3 125458819 125459185 -102065393 + MSTA LTR MaLR 49 428 0 9148 170 30 8 chr3 125459185 125459236 -102065342 + MSTA-int LTR MaLR 1 49 -1602 2147 133 33 25 chr3 125459236 125459597 -102064981 - THE1B LTR MaLR 0 364 1 10329 116 41 0 chr3 125459597 125461115 -102063463 - THE1B-int LTR MaLR 0 1580 1 2123 143 33 30 chr3 125461115 125461478 -102063100 - THE1B LTR MaLR 0 364 1 9148 170 30 8 chr3 125461478 125463031 -102061547 + MSTA-int LTR MaLR 48 1644 -7 2673 154 14 2 chr3 125463037 125463460 -102061118 + MSTA LTR MaLR 1 428 0 252 263 0 0 chr3 125463460 125463517 -102061061 + L1MA7 LINE L1 3818 3874 -2476 1535 116 186 45 chr3 125463517 125463828 -102060750 - THE1A LTR MaLR 0 355 1 2432 198 6 2 chr3 125463828 125464323 -102060255 + L1MA7 LINE L1 3870 4366 -1984 4657 169 46 22 chr3 125464334 125464514 -102060064 + L1MA7 LINE L1 5485 5659 -836 207 0 0 0 chr3 125464514 125464537 -102060041 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 4657 169 46 22 chr3 125464537 125465334 -102059244 + L1MA7 LINE L1 5659 6485 -10 186 143 0 0 chr3 125466275 125466310 -102058268 + (T)n Simple_repeat Simple_repeat 1 35 0 401 315 41 22 chr3 125467352 125467505 -102057073 + MER5B DNA MER1_type 17 184 -5 436 267 192 0 chr3 125467515 125467635 -102056943 - MER5A DNA MER1_type 0 189 47 391 242 11 0 chr3 125467664 125467755 -102056823 - MER5B DNA MER1_type 0 178 87 194 320 52 10 chr3 125468342 125468439 -102056139 + MIR SINE MIR 52 152 -110 220 195 24 0 chr3 125468446 125468487 -102056091 + (CA)n Simple_repeat Simple_repeat 1 42 0 3786 159 47 12 chr3 125469565 125470305 -102054273 - LTR1B LTR ERV1 0 785 1 282 338 118 30 chr3 125470986 125471223 -102053355 + L1ME LINE L1 337 594 -5829 1973 240 116 60 chr3 125471362 125473126 -102051452 + L1ME LINE L1 826 2804 -4318 1612 245 88 31 chr3 125473255 125474025 -102050553 + L1ME LINE L1 2825 3607 -3334 517 287 74 4 chr3 125474107 125474337 -102050241 + L1ME LINE L1 6307 6552 -364 477 270 58 35 chr3 125474342 125474516 -102050062 - L2 LINE L2 -4 3309 3132 274 227 15 0 chr3 125474525 125474591 -102049987 + L1ME LINE L1 6555 6621 -295 2284 87 3 19 chr3 125475259 125475568 -102049010 - AluSc SINE Alu 0 309 6 3566 123 10 11 chr3 125475673 125476246 -102048332 - LTR10C LTR ERV1 0 529 12 12846 238 51 55 chr3 125476265 125480124 -102044454 - HERVI LTR ERV1 -2 7783 3943 639 260 35 26 chr3 125480622 125480914 -102043664 - HERVI LTR ERV1 -6331 318 1 3706 115 16 16 chr3 125480928 125481501 -102043077 - LTR10C LTR ERV1 -18 573 1 517 208 10 158 chr3 125481520 125481722 -102042856 + L2 LINE L2 3114 3285 -28 356 234 201 16 chr3 125482994 125483178 -102041400 - HAL1 LINE L1 -2 2505 2288 23 0 0 0 chr3 125483245 125483268 -102041310 + AT_rich Low_complexity Low_complexity 1 23 0 1987 277 82 79 chr3 125483525 125485362 -102039216 - HAL1 LINE L1 -654 1853 11 182 250 203 0 chr3 125487055 125487119 -102037459 + MIR SINE MIR 71 147 -61 426 384 31 23 chr3 125487441 125487793 -102036785 - L2 LINE L2 -407 2907 2553 2302 262 51 54 chr3 125487812 125489575 -102035003 + L1MEc LINE L1 1684 3450 -2765 1611 209 0 3 chr3 125489575 125489881 -102034697 + AluJo SINE Alu 1 305 -7 2302 262 51 54 chr3 125489881 125489989 -102034589 + L1MEc LINE L1 3450 3557 -2658 1772 187 0 0 chr3 125489989 125490288 -102034290 + AluJo SINE Alu 1 299 -13 2499 84 0 0 chr3 125490291 125490600 -102033978 + AluSg1 SINE Alu 1 309 0 2302 262 51 54 chr3 125490600 125490681 -102033897 + L1MEc LINE L1 3559 3592 -2623 24 53 0 0 chr3 125490824 125490862 -102033716 + AT_rich Low_complexity Low_complexity 1 38 0 21 71 0 0 chr3 125491621 125491663 -102032915 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr3 125492266 125492295 -102032283 + AT_rich Low_complexity Low_complexity 1 29 0 1236 266 55 16 chr3 125493157 125493536 -102031042 - L1MCc LINE L1 -5242 1181 788 1757 217 52 15 chr3 125493562 125493968 -102030610 - L1MCc LINE L1 -5985 438 18 464 290 28 21 chr3 125494604 125494749 -102029829 - L2 LINE L2 0 3313 3168 441 178 56 0 chr3 125494755 125494845 -102029733 + L1MA3 LINE L1 11 105 -7460 6358 165 20 7 chr3 125494848 125496178 -102028400 + L1MA3 LINE L1 377 2400 -5165 2867 90 50 14 chr3 125496181 125496603 -102027975 + LTR3b LTR ERVK 1 437 0 13136 182 43 14 chr3 125496612 125496645 -102027933 + L1MA3 LINE L1 2408 2439 -5285 252 0 0 0 chr3 125496645 125496673 -102027905 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 13136 182 43 14 chr3 125496673 125501628 -102022950 + L1MA3 LINE L1 2439 7553 -171 2144 112 0 7 chr3 125501628 125501945 -102022633 + AluSx SINE Alu 3 317 0 13136 182 43 14 chr3 125501945 125502112 -102022466 + L1MA3 LINE L1 7553 7714 -10 781 313 50 18 chr3 125502137 125502479 -102022099 - L2 LINE L2 -142 3171 2819 1475 186 130 6 chr3 125503754 125504115 -102020463 + L1MD3 LINE L1 7576 7981 -14 304 277 119 103 chr3 125504138 125504567 -102020011 + L1ME4a LINE L1 5611 6046 -75 208 258 11 11 chr3 125504703 125504796 -102019782 + CT-rich Low_complexity Low_complexity 2 94 0 186 43 0 0 chr3 125504812 125504835 -102019743 + (TTCC)n Simple_repeat Simple_repeat 2 24 0 2680 151 5 7 chr3 125505404 125505836 -102018742 - MER31A LTR ERV1 -9 476 46 1022 136 33 5 chr3 125505899 125506083 -102018495 + MER53 DNA DNA 1 189 0 192 163 93 0 chr3 125507531 125507574 -102017004 - L2 LINE L2 0 3272 3226 496 266 113 4 chr3 125507634 125507863 -102016715 + L1ME3A LINE L1 5685 5938 -232 21 0 0 0 chr3 125507863 125507884 -102016694 + AT_rich Low_complexity Low_complexity 1 21 0 311 280 76 8 chr3 125508019 125508151 -102016427 + L1ME3A LINE L1 6020 6160 -10 286 382 45 0 chr3 125508745 125508902 -102015676 + L3b LINE CR1 1180 1343 -240 242 29 29 0 chr3 125508908 125508943 -102015635 + (TAGA)n Simple_repeat Simple_repeat 3 38 0 25 31 0 0 chr3 125509165 125509197 -102015381 + AT_rich Low_complexity Low_complexity 1 32 0 255 216 171 0 chr3 125509198 125509286 -102015292 - L1MA7 LINE L1 -22 6269 6167 32 26 0 0 chr3 125509279 125509318 -102015260 + AT_rich Low_complexity Low_complexity 1 39 0 * 29996 111 12 23 chr3 125509514 125515956 -102008622 + L1PA7 LINE L1 8 6469 0 35 41 0 0 chr3 125517066 125517115 -102007463 + AT_rich Low_complexity Low_complexity 1 49 0 2457 78 0 0 chr3 125517839 125518148 -102006430 - AluSq SINE Alu -4 309 1 757 250 45 0 chr3 125518610 125518786 -102005792 + MER5A DNA MER1_type 4 187 -2 728 112 69 0 chr3 125518964 125519555 -102005023 + (TA)n Simple_repeat Simple_repeat 1 631 0 2136 155 79 20 chr3 125519630 125520036 -102004542 + MSTB1 LTR MaLR 1 430 -2 401 241 105 30 chr3 125520136 125520269 -102004309 - L2 LINE L2 0 3313 3171 1561 126 24 114 chr3 125520391 125520724 -102003854 - AluYb8 SINE Alu -15 303 1 202 284 0 68 chr3 125520747 125520821 -102003757 - L2 LINE L2 -251 3062 2994 1075 292 104 14 chr3 125520990 125521432 -102003146 - L2 LINE L2 -429 2885 2404 443 305 17 0 chr3 125523326 125523444 -102001134 + L2 LINE L2 3192 3311 -2 1038 261 48 14 chr3 125523782 125524113 -102000465 + MER45C DNA AcHobo 1 399 -554 421 253 138 67 chr3 125524143 125524234 -102000344 + MER45C DNA AcHobo 713 796 -785 219 88 0 0 chr3 125524234 125524268 -102000310 + (TG)n Simple_repeat Simple_repeat 1 34 0 421 253 138 67 chr3 125524268 125524401 -102000177 + MER45C DNA AcHobo 796 953 0 1150 211 13 4 chr3 125524505 125524733 -101999845 + LTR16C LTR ERVL 253 482 -9 23 86 0 0 chr3 125525285 125525343 -101999235 + AT_rich Low_complexity Low_complexity 1 58 0 21 0 0 0 chr3 125525357 125525378 -101999200 + AT_rich Low_complexity Low_complexity 1 21 0 700 292 23 0 chr3 125525924 125526095 -101998483 + MER5A DNA MER1_type 12 186 -3 583 194 0 0 chr3 125526099 125526192 -101998386 - MER5A DNA MER1_type -94 95 3 288 270 93 52 chr3 125526501 125526603 -101997975 + MIR3 SINE MIR 72 199 -63 884 215 64 43 chr3 125526603 125526836 -101997742 + MER8 DNA MER2_type 1 238 -1 288 270 93 52 chr3 125526836 125526892 -101997686 + MIR3 SINE MIR 199 251 -11 710 239 13 0 chr3 125527683 125527838 -101996740 - FRAM SINE Alu -9 157 1 1189 63 0 7 chr3 125527949 125528092 -101996486 - AluY SINE Alu -150 161 20 189 0 0 0 chr3 125528097 125528118 -101996460 + (T)n Simple_repeat Simple_repeat 1 21 0 682 256 33 35 chr3 125529005 125529160 -101995418 - MIR SINE MIR 0 262 100 2528 155 45 13 chr3 125529160 125529630 -101994948 - MER31A LTR ERV1 0 485 1 682 256 33 35 chr3 125529630 125529706 -101994872 - MIR SINE MIR -162 100 25 676 296 47 0 chr3 125529749 125529962 -101994616 - MIR SINE MIR -11 251 29 272 243 110 69 chr3 125529984 125530157 -101994421 + MIR3 SINE MIR 21 200 -8 225 94 0 0 chr3 125532664 125532696 -101991882 + (CAT)n Simple_repeat Simple_repeat 3 34 0 1131 210 68 34 chr3 125532987 125533282 -101991296 + MER46C DNA MER2_type 34 338 0 3660 139 104 39 chr3 125533348 125534123 -101990455 - LTR1B LTR ERV1 0 826 1 27 49 0 0 chr3 125535967 125536008 -101988570 + AT_rich Low_complexity Low_complexity 1 41 0 2217 120 3 34 chr3 125586124 125586276 -101938302 - MER4D LTR ERV1 -534 338 183 2033 92 46 0 chr3 125586276 125586558 -101938020 - AluY SINE Alu -16 295 1 2217 120 3 34 chr3 125586558 125586754 -101937824 - MER4D LTR ERV1 -689 183 1 760 183 14 103 chr3 125586792 125587005 -101937573 - MLT1A1 LTR MaLR -171 194 1 4414 229 69 40 chr3 125587005 125588099 -101936479 - MLT1A1-int LTR MaLR 0 1735 611 611 139 19 46 chr3 125588099 125588207 -101936371 + MSTA LTR MaLR 1 105 -323 453 214 129 96 chr3 125588268 125588446 -101936132 + MER5A DNA MER1_type 5 188 -1 324 312 173 5 chr3 125589197 125589399 -101935179 - MIR SINE MIR -20 242 7 2190 97 3 7 chr3 125589558 125589868 -101934710 - L1P4 LINE L1 -561 5604 5296 1032 100 7 0 chr3 125589869 125590009 -101934569 + L1PA15 LINE L1 5641 5781 -384 2323 126 52 0 chr3 125590111 125590477 -101934101 + L1PA15 LINE L1 5772 6156 -9 30 0 0 0 chr3 125590477 125590507 -101934071 + AT_rich Low_complexity Low_complexity 1 30 0 325 322 62 51 chr3 125590633 125590810 -101933768 - MIR SINE MIR -64 198 20 447 176 0 0 chr3 125591053 125591127 -101933451 + MER33 DNA MER1_type 11 84 -240 6830 31 1 7 chr3 125591146 125591954 -101932624 - L1PA4 LINE L1 -1 6154 5352 1211 44 0 0 chr3 125591975 125592112 -101932466 - L1PA3 LINE L1 -3 6152 6016 10218 36 1 0 chr3 125592235 125593451 -101931127 - L1PA4 LINE L1 -780 5366 4150 966 214 101 71 chr3 125593485 125593730 -101930848 + MLT2B3 LTR ERVL 1 255 -299 4453 244 105 46 chr3 125593730 125595388 -101929190 - MER52A LTR ERV1 0 1755 1 906 192 138 50 chr3 125595388 125595597 -101928981 + MLT2B3 LTR ERVL 266 456 -69 396 59 44 0 chr3 125595597 125595665 -101928913 + (TCTA)n Simple_repeat Simple_repeat 2 72 0 906 192 138 50 chr3 125595665 125595720 -101928858 + MLT2B3 LTR ERVL 456 505 -20 455 0 18 0 chr3 125595765 125595820 -101928758 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 291 138 19 27 chr3 125595821 125595889 -101928689 + MLT2B3 LTR ERVL 458 554 0 211 245 20 0 chr3 125596537 125596586 -101927992 + CT-rich Low_complexity Low_complexity 2 51 0 894 275 185 15 chr3 125597263 125597751 -101926827 + L2 LINE L2 2731 3312 -1 322 230 14 14 chr3 125597891 125597965 -101926613 - LTR33A LTR ERVL -2 521 448 260 266 68 96 chr3 125598214 125598391 -101926187 - LTR33 LTR ERVL -349 172 1 298 227 13 13 chr3 125600197 125600272 -101924306 - MLT1H LTR MaLR -18 572 498 462 273 31 41 chr3 125600373 125600567 -101924011 - MLT1H LTR MaLR -242 307 116 313 304 122 23 chr3 125601415 125601629 -101922949 + MIR SINE MIR 22 256 -6 2356 95 0 3 chr3 125601850 125602177 -101922401 + AluY SINE Alu 1 326 0 186 43 0 0 chr3 125602422 125602445 -101922133 + (TTCA)n Simple_repeat Simple_repeat 3 25 0 220 314 169 12 chr3 125602624 125602796 -101921782 + L3 LINE CR1 647 845 -732 329 292 61 32 chr3 125602906 125603232 -101921346 + L3 LINE CR1 1030 1480 -97 682 221 127 7 chr3 125603258 125603286 -101921292 - MIR SINE MIR -34 228 205 503 31 15 0 chr3 125603286 125603351 -101921227 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 682 221 127 7 chr3 125603351 125603502 -101921076 - MIR SINE MIR -57 205 31 2435 90 3 0 chr3 125603797 125604098 -101920480 - AluSp SINE Alu -11 302 1 393 327 101 14 chr3 125604172 125604389 -101920189 - MIR SINE MIR -7 255 20 1827 212 129 54 chr3 125604914 125605418 -101919160 - MLT1F LTR MaLR 0 542 1 866 273 19 16 chr3 125606428 125606684 -101917894 - MLT1H LTR MaLR -292 257 1 391 344 43 22 chr3 125607438 125607668 -101916910 - MIR SINE MIR -8 254 20 515 332 31 22 chr3 125608662 125608888 -101915690 - MIR SINE MIR -14 248 21 1788 228 25 6 chr3 125608888 125609244 -101915334 - MLT1A1 LTR MaLR 0 365 3 4732 195 89 6 chr3 125609280 125610574 -101914004 - L1MD1 LINE L1 0 6242 4849 672 323 34 58 chr3 125610655 125611036 -101913542 + L1MB2 LINE L1 434 805 -5498 6074 237 84 34 chr3 125611194 125612014 -101912564 + L1MB2 LINE L1 804 1582 -4800 4494 160 40 13 chr3 125612014 125612869 -101911709 - L1MA8 LINE L1 -10 6281 5404 6074 237 84 34 chr3 125612869 125613571 -101911007 + L1MB2 LINE L1 1582 2247 -4135 183 42 0 0 chr3 125613571 125613595 -101910983 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 6074 237 84 34 chr3 125613595 125615496 -101909082 + L1MB2 LINE L1 2247 4285 -2097 4226 211 29 3 chr3 125615598 125617241 -101907337 + L1MB2 LINE L1 4692 6371 -36 1793 255 65 33 chr3 125617241 125618057 -101906521 - L1M4 LINE L1 -1286 4860 4019 360 340 117 6 chr3 125618985 125619147 -101905431 - MIR SINE MIR -79 183 4 183 299 23 35 chr3 125619189 125619276 -101905302 - L2 LINE L2 -211 3061 2976 2515 147 26 2 chr3 125619656 125620072 -101904506 + MSTA LTR MaLR 1 426 -2 2876 6 0 0 chr3 125620169 125620480 -101904098 + AluY SINE Alu 1 311 0 398 211 235 6 chr3 125620546 125620712 -101903866 + MLT1H1 LTR MaLR 347 550 -5 24 0 0 0 chr3 125621028 125621052 -101903526 + AT_rich Low_complexity Low_complexity 1 24 0 281 93 19 0 chr3 125622373 125622427 -101902151 + (TTTG)n Simple_repeat Simple_repeat 2 56 0 2165 92 3 7 chr3 125622430 125622713 -101901865 - AluSp SINE Alu -31 282 1 1119 191 5 0 chr3 125623249 125623453 -101901125 + MER2 DNA MER2_type 1 205 -140 23 33 0 0 chr3 125623453 125623483 -101901095 + AT_rich Low_complexity Low_complexity 1 30 0 311 266 0 0 chr3 125623484 125623548 -101901030 + MER2 DNA MER2_type 281 344 -1 295 381 12 6 chr3 125623688 125623856 -101900722 + L3 LINE CR1 1294 1462 -115 1319 43 4 174 chr3 125624786 125625021 -101899557 - AluY SINE Alu -5 306 112 2280 84 0 42 chr3 125625741 125626049 -101898529 - AluSx SINE Alu -17 295 1 192 370 76 17 chr3 125626771 125626890 -101897688 + MIR3 SINE MIR 39 164 -44 329 287 0 10 chr3 125628374 125628475 -101896103 + CT-rich Low_complexity Low_complexity 1 100 0 471 195 108 23 chr3 125630008 125630171 -101894407 - MLT1C LTR MaLR -332 173 1 268 259 35 47 chr3 125630172 125630257 -101894321 - MIR3 SINE MIR -6 202 119 873 253 72 19 chr3 125630385 125630885 -101893693 + MLT1G LTR MaLR 10 590 0 275 232 18 0 chr3 125631329 125631385 -101893193 - L2 LINE L2 -252 3061 3005 313 319 96 87 chr3 125631906 125632184 -101892394 - L1MEd LINE L1 -5287 832 558 1865 179 18 0 chr3 125632184 125632519 -101892059 - MER58B DNA MER1_type 0 341 1 313 319 96 87 chr3 125632519 125632990 -101891588 - L1MEd LINE L1 -5561 558 76 700 133 0 0 chr3 125634815 125634928 -101889650 - L1PB1 LINE L1 -1 6150 6038 679 331 16 4 chr3 125635041 125635286 -101889292 - MIR SINE MIR -2 260 13 205 349 112 0 chr3 125635248 125635400 -101889178 + MIR3 SINE MIR 27 195 -13 * 651 214 8 0 chr3 125635703 125635834 -101888744 + FLAM_A SINE Alu 1 132 -1 322 299 224 27 chr3 125637245 125637392 -101887186 + MER5B DNA MER1_type 1 176 -2 365 262 16 71 chr3 125637394 125637520 -101887058 + L2 LINE L2 3189 3307 -6 1424 251 38 6 chr3 125637850 125638216 -101886362 + LTR16A LTR ERVL 56 433 -17 566 226 155 22 chr3 125638294 125638475 -101886103 - L2 LINE L2 -30 3283 3079 1188 218 62 3 chr3 125638482 125638771 -101885807 - MER63 DNA MER1_type -2 1060 755 1266 188 39 0 chr3 125638774 125639030 -101885548 - MER63 DNA MER1_type -795 266 1 230 261 145 0 chr3 125639600 125639669 -101884909 + MIR SINE MIR 69 147 -115 6137 131 12 17 chr3 125640119 125640478 -101884100 - L1PB1 LINE L1 -7 6860 6501 447 106 0 0 chr3 125640478 125640544 -101884034 + (TG)n Simple_repeat Simple_repeat 2 67 0 6137 131 12 17 chr3 125640544 125641699 -101882879 - L1PB1 LINE L1 -366 6501 5355 * 15796 134 95 5 chr3 125641697 125642919 -101881659 - L1PB1 LINE L1 -3466 3396 2285 2310 102 0 0 chr3 125642919 125643214 -101881364 - AluSx SINE Alu -17 295 1 15796 134 95 5 chr3 125643214 125645106 -101879472 - L1PB1 LINE L1 -4577 2285 1 22 0 0 0 chr3 125645439 125645461 -101879117 + AT_rich Low_complexity Low_complexity 1 22 0 329 296 105 19 chr3 125645472 125645634 -101878944 - L1ME4a LINE L1 -4 6117 5942 6509 122 9 16 chr3 125645677 125646726 -101877852 - L1MA3 LINE L1 -8 7716 6675 15505 172 45 7 chr3 125646731 125647345 -101877233 - L1MA3 LINE L1 -1113 6452 5863 194 0 0 37 chr3 125647345 125647372 -101877206 + (TTA)n Simple_repeat Simple_repeat 2 27 0 15505 172 45 7 chr3 125647372 125652563 -101872015 - L1MA3 LINE L1 -1702 5863 13 312 257 44 18 chr3 125652567 125652680 -101871898 - L1ME4a LINE L1 -229 5892 5777 239 307 52 39 chr3 125652682 125652835 -101871743 - MARNA DNA Mariner -33 553 399 339 276 35 41 chr3 125652919 125653064 -101871514 + MARNA DNA Mariner 304 447 -139 198 171 0 0 chr3 125653659 125653700 -101870878 + T-rich Low_complexity Low_complexity 1 41 0 2044 179 48 34 chr3 125654352 125654883 -101869695 - MLT2A2 LTR ERVL 0 554 1 1719 177 10 17 chr3 125656001 125656300 -101868278 + AluJo SINE Alu 1 297 -15 427 165 10 10 chr3 125656300 125656396 -101868182 + GA-rich Low_complexity Low_complexity 5 103 0 410 346 96 57 chr3 125656738 125657195 -101867383 - L2 LINE L2 -337 2977 2503 226 213 12 25 chr3 125657412 125657492 -101867086 + T-rich Low_complexity Low_complexity 4 82 0 424 295 75 26 chr3 125657612 125657958 -101866620 + L1ME4a LINE L1 5734 6096 -25 5365 152 19 14 chr3 125658608 125659527 -101865051 + MER49 LTR ERV1 1 923 0 1837 93 100 38 chr3 125660400 125660691 -101863887 + AluY SINE Alu 1 309 -2 550 255 57 99 chr3 125661479 125661742 -101862836 + MIR SINE MIR 11 262 0 206 286 0 0 chr3 125661768 125661810 -101862768 - L2 LINE L2 -21 3292 3251 522 223 195 48 chr3 125662103 125662457 -101862121 - MLT1J1 LTR MaLR 0 446 41 449 232 77 53 chr3 125664810 125665000 -101859578 - MLT1J1 LTR MaLR 0 473 289 396 281 41 0 chr3 125665042 125665188 -101859390 - MLT1J2 LTR MaLR -298 152 1 336 102 0 0 chr3 125666092 125666141 -101858437 + (GA)n Simple_repeat Simple_repeat 1 49 0 407 394 28 11 chr3 125666628 125666808 -101857770 + MIR3 SINE MIR 15 197 -11 1230 293 257 26 chr3 125667522 125668406 -101856172 + L3 LINE CR1 380 1467 -110 430 354 92 17 chr3 125669389 125669683 -101854895 + L2 LINE L2 2148 2463 -851 235 255 63 144 chr3 125669675 125670008 -101854570 - L2 LINE L2 0 3313 3008 * 455 224 23 0 chr3 125670086 125670260 -101854318 + (TA)n Simple_repeat Simple_repeat 1 178 0 7929 182 45 18 chr3 125670639 125671829 -101852749 + L1PA15 LINE L1 3721 4878 -1287 2321 67 0 0 chr3 125671829 125672136 -101852442 + AluY SINE Alu 1 307 0 7929 182 45 18 chr3 125672136 125673352 -101851226 + L1PA15 LINE L1 4878 6152 -13 23 0 0 0 chr3 125673370 125673393 -101851185 + AT_rich Low_complexity Low_complexity 1 23 0 275 346 67 82 chr3 125673466 125673781 -101850797 - L2 LINE L2 -5 3267 2958 474 290 25 12 chr3 125673820 125673982 -101850596 + MLT1I LTR MaLR 1 164 -245 447 290 220 10 chr3 125674336 125674650 -101849928 + L1ME LINE L1 5265 5644 -477 364 232 87 14 chr3 125675077 125675215 -101849363 + L1ME LINE L1 5632 5779 -342 458 313 103 10 chr3 125675499 125675694 -101848884 + MIR SINE MIR 2 214 -48 286 280 63 49 chr3 125676759 125676902 -101847676 - MIR3 SINE MIR -21 187 43 756 228 13 13 chr3 125677095 125677253 -101847325 + MER5B DNA MER1_type 20 177 -1 354 267 38 111 chr3 125678225 125678487 -101846091 + MLT1I LTR MaLR 90 332 -77 399 283 20 20 chr3 125678821 125678973 -101845605 - MLT1K LTR MaLR -22 566 415 3862 157 34 76 chr3 125679004 125680036 -101844542 - L1MB7 LINE L1 -5 6179 5189 239 36 18 71 chr3 125680043 125680099 -101844479 + (TTTA)n Simple_repeat Simple_repeat 2 54 0 1373 205 19 13 chr3 125680107 125680490 -101844088 - L1MB7 LINE L1 -941 5205 4828 446 167 8 87 chr3 125680474 125680541 -101844037 + L1MB7 LINE L1 6050 6104 -80 * 2251 103 0 39 chr3 125680541 125680852 -101843726 + AluY SINE Alu 1 299 -12 446 167 8 87 chr3 125680852 125680910 -101843668 + L1MB7 LINE L1 6104 6165 -19 974 154 15 46 chr3 125682044 125682239 -101842339 - MER5A DNA MER1_type 0 189 1 375 238 175 44 chr3 125682281 125682441 -101842137 + MER5A DNA MER1_type 9 189 0 549 238 43 32 chr3 125682589 125682774 -101841804 - LTR33 LTR ERVL -3 518 332 493 256 28 17 chr3 125682779 125682955 -101841623 - LTR33 LTR ERVL -307 214 37 490 277 168 0 chr3 125683520 125683657 -101840921 - MER5A DNA MER1_type -21 168 9 204 312 39 26 chr3 125684276 125684353 -101840225 - L2 LINE L2 -6 3266 3189 237 233 43 112 chr3 125684747 125684863 -101839715 - L2 LINE L2 -233 3039 2932 195 42 0 0 chr3 125686181 125686205 -101838373 + (T)n Simple_repeat Simple_repeat 1 24 0 634 180 44 27 chr3 125686232 125686415 -101838163 + MER53 DNA DNA 1 186 -3 367 290 35 21 chr3 125687884 125688029 -101836549 - MIR SINE MIR -43 219 73 226 265 15 0 chr3 125688738 125688806 -101835772 + MLT1J2 LTR MaLR 343 411 -39 356 263 74 0 chr3 125688828 125688923 -101835655 + MER5A DNA MER1_type 8 109 -80 223 290 87 0 chr3 125689096 125689165 -101835413 + MER5A DNA MER1_type 90 164 -25 21 71 0 0 chr3 125689240 125689282 -101835296 + AT_rich Low_complexity Low_complexity 1 42 0 1901 32 0 9 chr3 125690389 125690645 -101833933 + AluY SINE Alu 63 316 0 217 178 0 22 chr3 125691576 125691621 -101832957 + GA-rich Low_complexity Low_complexity 4 47 0 2186 240 49 6 chr3 125691652 125692186 -101832392 + MER68 LTR ERV1 6 562 0 258 256 26 13 chr3 125692617 125692695 -101831883 + MIR SINE MIR 172 250 -12 197 327 139 30 chr3 125693025 125693126 -101831452 + MIR3 SINE MIR 13 124 -84 2211 147 39 14 chr3 125693126 125693481 -101831097 + THE1B LTR MaLR 1 364 0 11276 101 14 2 chr3 125693481 125695042 -101829536 + THE1B-int LTR MaLR 1 1580 0 2035 147 51 20 chr3 125695052 125695405 -101829173 + THE1B LTR MaLR 1 364 0 208 263 0 18 chr3 125697008 125697065 -101827513 + CT-rich Low_complexity Low_complexity 4 59 0 390 21 0 0 chr3 125697067 125697114 -101827464 + (CA)n Simple_repeat Simple_repeat 1 47 0 180 0 0 0 chr3 125698049 125698069 -101826509 + (TAA)n Simple_repeat Simple_repeat 1 20 0 1809 234 21 37 chr3 125698074 125698586 -101825992 + MLT1D LTR MaLR 2 505 0 419 274 6 61 chr3 125698595 125698759 -101825819 - MIR SINE MIR 0 262 108 2956 141 10 2 chr3 125698872 125699375 -101825203 - MER41B LTR ERV1 -126 509 3 11254 123 38 21 chr3 125699377 125701548 -101823030 - MER41B-int LTR ERV1 0 5946 2027 256 139 0 0 chr3 125701531 125701574 -101823004 - MER41B-int LTR ERV1 -3523 4014 3972 * 4172 129 37 34 chr3 125701561 125702338 -101822240 - MER41B-int LTR ERV1 -3000 2946 2167 3337 135 64 25 chr3 125702337 125702851 -101821727 - MER41B-int LTR ERV1 -3932 2014 1357 * 2414 88 0 3 chr3 125702851 125703159 -101821419 + AluY SINE Alu 1 307 -4 3337 135 64 25 chr3 125703159 125703384 -101821194 - MER41B-int LTR ERV1 -4589 1357 1142 * 3745 128 29 2 chr3 125703381 125703967 -101820611 - MER41B-int LTR ERV1 -5343 603 2 957 117 7 0 chr3 125703968 125704122 -101820456 - MER41B LTR ERV1 0 635 481 436 296 32 56 chr3 125704363 125704613 -101819965 - L2 LINE L2 -212 3060 2817 565 336 83 20 chr3 125704664 125705012 -101819566 + L2 LINE L2 1802 2171 -1143 524 342 115 22 chr3 125705265 125705629 -101818949 - L2 LINE L2 -641 2673 2267 2089 127 39 41 chr3 125705629 125705992 -101818586 + THE1B LTR MaLR 1 362 -2 524 342 115 22 chr3 125705992 125706028 -101818550 - L2 LINE L2 -1047 2267 2236 1466 199 21 81 chr3 125706226 125706647 -101817931 + MSTD LTR MaLR 1 396 0 1428 199 126 35 chr3 125707241 125707669 -101816909 + MLT1C LTR MaLR 1 467 0 12805 147 64 6 chr3 125708067 125708247 -101816331 + Tigger1 DNA MER2_type 1 169 -2249 303 93 0 0 chr3 125708247 125708290 -101816288 + (CAT)n Simple_repeat Simple_repeat 2 44 0 12805 147 64 6 chr3 125708290 125710394 -101814184 + Tigger1 DNA MER2_type 169 2417 -1 42 20 0 0 chr3 125710396 125710445 -101814133 + AT_rich Low_complexity Low_complexity 1 49 0 2137 135 140 8 chr3 125711730 125712108 -101812470 + MSTA LTR MaLR 1 428 0 8383 179 55 4 chr3 125712108 125713679 -101810899 + MSTA-int LTR MaLR 1 1651 0 2174 138 125 8 chr3 125713679 125714062 -101810516 + MSTA LTR MaLR 1 428 0 183 42 0 0 chr3 125714677 125714701 -101809877 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 201 264 75 0 chr3 125714969 125715022 -101809556 + L2 LINE L2 3216 3272 0 379 276 211 0 chr3 125716718 125716874 -101807704 + MER5A DNA MER1_type 1 189 0 195 162 0 0 chr3 125718334 125718371 -101806207 + (CA)n Simple_repeat Simple_repeat 2 38 0 265 286 13 0 chr3 125718553 125718630 -101805948 - MIR SINE MIR 0 262 185 737 100 0 0 chr3 125718666 125718766 -101805812 - AluSg/x SINE Alu -12 300 201 877 102 0 0 chr3 125718882 125719000 -101805578 - AluSg/x SINE Alu -12 300 183 196 250 23 0 chr3 125719072 125719116 -101805462 + MIR SINE MIR 45 89 -119 531 217 177 29 chr3 125719313 125719488 -101805090 + MIR SINE MIR 57 257 -5 275 319 78 28 chr3 125720782 125720923 -101803655 + MIR SINE MIR 1 148 -114 216 271 0 0 chr3 125720960 125721008 -101803570 + CT-rich Low_complexity Low_complexity 4 51 0 1280 199 11 113 chr3 125721699 125722071 -101802507 - MLT1B LTR MaLR 0 390 57 1479 244 78 16 chr3 125722189 125722612 -101801966 + LTR40b LTR ERVL 6 454 -8 396 260 17 13 chr3 125722620 125722765 -101801813 - L1M3 LINE L1 -737 5429 5294 3215 181 59 8 chr3 125722767 125723363 -101801215 - MER44D DNA MER2_type -1 604 107 2810 138 17 18 chr3 125723373 125723947 -101800631 + L1P4 LINE L1 5141 5705 -456 1847 286 71 16 chr3 125723953 125724192 -101800386 + L1M2 LINE L1 1639 1863 -4986 252 0 0 0 chr3 125724192 125724220 -101800358 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 1847 286 71 16 chr3 125724220 125724272 -101800306 + L1M2 LINE L1 1863 1911 -4938 2072 68 8 8 chr3 125724272 125724536 -101800042 + AluY SINE Alu 34 297 -14 1847 286 71 16 chr3 125724536 125725212 -101799366 + L1M2 LINE L1 1911 2661 -4188 2005 122 7 14 chr3 125725213 125725507 -101799071 + AluSc SINE Alu 1 292 -17 327 104 0 0 chr3 125725614 125725662 -101798916 + Alu SINE Alu 259 306 -2 13727 204 23 20 chr3 125725937 125729481 -101795097 + L1PB1 LINE L1 6 3868 -2999 186 43 0 0 chr3 125729481 125729504 -101795074 + (CAA)n Simple_repeat Simple_repeat 2 24 0 13727 204 23 20 chr3 125729504 125732512 -101792066 + L1PB1 LINE L1 3868 6863 -4 539 115 106 10 chr3 125732521 125732625 -101791953 + L1PA10 LINE L1 6054 6167 -1 26420 120 88 30 chr3 125732690 125738508 -101786070 + L1PA8 LINE L1 2 6168 -4 339 170 150 0 chr3 125738503 125738603 -101785975 + L1MC3 LINE L1 7575 7689 -96 * 912 218 58 4 chr3 125738661 125738904 -101785674 + MER69 DNA AcHobo 2251 2506 -20 454 280 17 0 chr3 125739148 125739266 -101785312 + MIR SINE MIR 56 175 -87 4315 230 30 10 chr3 125739741 125741142 -101783436 + L1MA4A LINE L1 3165 4592 -2973 6921 29 0 0 chr3 125741146 125741961 -101782617 - L1PA3 LINE L1 -1936 4210 3396 9599 35 1 0 chr3 125741961 125743891 -101780687 + L1PA3 LINE L1 4222 6153 -2 8671 209 18 20 chr3 125743897 125746013 -101778565 + L1MA4A LINE L1 4584 6694 -871 1414 205 89 80 chr3 125746013 125746542 -101778036 + MER66A LTR ERV1 97 471 -7 270 125 0 0 chr3 125746573 125746621 -101777957 + (A)n Simple_repeat Simple_repeat 1 48 0 3372 167 82 113 chr3 125746628 125747656 -101776922 + L1MA4A LINE L1 6722 7717 -5 279 244 43 28 chr3 125747668 125747762 -101776816 - L1MEc LINE L1 -2558 3657 3563 2186 127 0 3 chr3 125747776 125748084 -101776494 + AluSq SINE Alu 1 307 -6 5270 166 28 13 chr3 125748085 125748324 -101776254 - L1MC1 LINE L1 -15 6318 6084 2102 148 11 32 chr3 125748324 125748695 -101775883 + MLT1A1 LTR MaLR 1 363 -2 5270 166 28 13 chr3 125748695 125749450 -101775128 - L1MC1 LINE L1 -249 6084 5309 1709 197 61 25 chr3 125749447 125749919 -101774659 - L1MC1 LINE L1 -1075 5071 4583 * 3481 252 97 26 chr3 125749932 125752408 -101772170 - L1MEc LINE L1 -2647 3568 925 1946 126 37 50 chr3 125752408 125752788 -101771790 - THE1C LTR MaLR 0 375 1 3481 252 97 26 chr3 125752788 125752857 -101771721 - L1MEc LINE L1 -5290 925 862 1283 301 42 5 chr3 125752855 125753280 -101771298 - L1MEc LINE L1 -5919 477 37 * 29 0 0 0 chr3 125753799 125753828 -101770750 + AT_rich Low_complexity Low_complexity 1 29 0 192 243 0 0 chr3 125754033 125754107 -101770471 + A-rich Low_complexity Low_complexity 4 77 0 2207 106 13 6 chr3 125755813 125756124 -101768454 - AluSp SINE Alu 0 313 1 254 57 0 0 chr3 125756155 125756190 -101768388 - L1MA6 LINE L1 -18 6282 6248 * 5947 221 55 17 chr3 125756188 125759043 -101765535 - L1 LINE L1 -3002 4165 1108 2563 269 75 18 chr3 125759039 125760161 -101764417 - L1M4 LINE L1 -1976 4170 2985 * 618 143 0 29 chr3 125760148 125760253 -101764325 - L1M1 LINE L1 -573 5727 5626 * 526 183 0 0 chr3 125760256 125760349 -101764229 + L1PB1 LINE L1 1067 1159 -5704 12172 157 41 3 chr3 125760351 125765701 -101758877 + L1PB1 LINE L1 1311 6867 0 1276 284 62 27 chr3 125765710 125765947 -101758631 - L1MEc LINE L1 -5828 568 341 1958 138 37 42 chr3 125765947 125766324 -101758254 - THE1C LTR MaLR 0 375 1 1276 284 62 27 chr3 125766324 125766601 -101757977 - L1MEc LINE L1 -6055 341 36 659 312 11 11 chr3 125768230 125768416 -101756162 - MER5A DNA MER1_type -3 186 1 1002 170 97 102 chr3 125769517 125769900 -101754678 - MLT1C LTR MaLR 0 390 10 2077 100 7 0 chr3 125774842 125775113 -101749465 + AluSx SINE Alu 1 273 -39 821 244 56 0 chr3 125775600 125775797 -101748781 - LTR16A LTR ERVL 0 450 243 3015 161 7 6 chr3 125775800 125776823 -101747755 + L1PB1 LINE L1 4724 5745 -406 235 102 20 20 chr3 125777025 125777074 -101747504 + (TA)n Simple_repeat Simple_repeat 1 49 0 2301 140 0 5 chr3 125777075 125777446 -101747132 + L1PB1 LINE L1 5783 6151 0 3005 222 16 16 chr3 125777475 125778625 -101745953 + L1PA15-16 LINE L1 1602 2770 -4027 1138 165 91 4 chr3 125778619 125778873 -101745705 + L1M4 LINE L1 5460 5735 -449 * 4741 254 30 16 chr3 125778996 125780902 -101743676 + L1PA15-16 LINE L1 1739 3655 -3194 * 6626 208 42 30 chr3 125780886 125782590 -101741988 + L1PA15-16 LINE L1 4025 5748 -1101 1850 178 47 43 chr3 125782594 125783016 -101741562 + MSTB LTR MaLR 1 424 -2 6859 206 33 4 chr3 125783019 125784427 -101740151 + MSTB-int LTR MaLR 1 1449 -202 699 78 0 19 chr3 125784427 125784530 -101740048 + MSTA LTR MaLR 285 385 -43 2317 120 56 11 chr3 125784530 125784889 -101739689 - THE1C LTR MaLR 0 375 1 1883 89 4 4 chr3 125784900 125785171 -101739407 - THE1C-int LTR MaLR -12 1568 1298 973 210 0 0 chr3 125785168 125785363 -101739215 - L1P LINE L1 -4304 1842 1648 * 10674 188 26 31 chr3 125785364 125787310 -101737268 + L1MA9 LINE L1 2523 4445 -1867 2490 73 0 0 chr3 125787310 125787610 -101736968 - AluY SINE Alu -11 300 1 10674 188 26 31 chr3 125787610 125788949 -101735629 + L1MA9 LINE L1 4445 5789 -523 236 241 13 0 chr3 125788957 125789036 -101735542 + (TA)n Simple_repeat Simple_repeat 2 81 0 1216 170 22 64 chr3 125789067 125789378 -101735200 + L1MA9 LINE L1 5804 6101 -211 855 217 63 0 chr3 125789384 125789573 -101735005 + Tigger3(Golem) DNA MER2_type 1 201 -2828 * 3213 148 46 17 chr3 125789567 125790223 -101734355 + Tigger3(Golem) DNA MER2_type 2355 3029 0 551 112 71 0 chr3 125790223 125790321 -101734257 + L1MA9 LINE L1 6103 6207 -105 1691 191 36 12 chr3 125790594 125790929 -101733649 + MER2 DNA MER2_type 2 344 0 392 318 54 0 chr3 125791197 125791326 -101733252 - MIR SINE MIR -43 219 84 180 237 0 0 chr3 125791970 125792008 -101732570 - L2 LINE L2 -15 3298 3261 425 303 107 31 chr3 125792441 125792768 -101731810 + MLT1K LTR MaLR 201 552 -36 261 388 133 5 chr3 125793484 125793672 -101730906 + L2 LINE L2 3052 3263 -9 23 0 0 0 chr3 125793672 125793695 -101730883 + AT_rich Low_complexity Low_complexity 1 23 0 184 195 11 138 chr3 125793973 125794060 -101730518 - L3 LINE CR1 0 1577 1502 537 276 164 13 chr3 125795565 125795717 -101728861 - MER5A DNA MER1_type -7 182 8 250 333 23 23 chr3 125795734 125795821 -101728757 - MER5A DNA MER1_type -3 186 89 24 0 0 0 chr3 125795855 125795879 -101728699 + AT_rich Low_complexity Low_complexity 1 24 0 28603 108 8 23 chr3 125795886 125802290 -101722288 - L1PA7 LINE L1 -9 6460 58 20384 138 20 84 chr3 125802392 125806866 -101717712 - L1P LINE L1 -1948 4198 12 3344 253 50 46 chr3 125807187 125808161 -101716417 + L1PA15 LINE L1 1 978 -5809 4295 224 16 20 chr3 125808193 125809349 -101715229 + L1PA15 LINE L1 2132 3282 -3515 10784 195 6 1 chr3 125809350 125809996 -101714582 + L1PA15 LINE L1 3361 4003 -2813 1857 146 0 34 chr3 125809996 125810331 -101714247 + AluSx SINE Alu 1 325 0 10784 195 6 1 chr3 125810331 125813143 -101711435 + L1PA15 LINE L1 4003 6812 -4 22 0 0 0 chr3 125813234 125813256 -101711322 + AT_rich Low_complexity Low_complexity 1 22 0 222 37 0 0 chr3 125813323 125813360 -101711218 + (CA)n Simple_repeat Simple_repeat 1 64 0 222 37 0 0 chr3 125813360 125813387 -101711191 + (CA)n Simple_repeat Simple_repeat 2 28 0 473 332 93 14 chr3 125814114 125814328 -101710250 + MIR SINE MIR 20 250 -12 482 269 53 25 chr3 125814810 125815012 -101709566 - MIR SINE MIR -14 248 37 1431 86 19 119 chr3 125815012 125815281 -101709297 + LTR12 LTR ERV1 33 274 -440 300 272 0 0 chr3 125815283 125815364 -101709214 + LTR30 LTR ERV1 544 624 -98 826 108 25 8 chr3 125815364 125815484 -101709094 + LTR12 LTR ERV1 359 480 -234 324 352 114 0 chr3 125815812 125815988 -101708590 - MIR SINE MIR -59 203 8 219 280 210 20 chr3 125816660 125816760 -101707818 - L2 LINE L2 -5 3308 3190 246 128 0 0 chr3 125816798 125816837 -101707741 + (CA)n Simple_repeat Simple_repeat 2 40 0 540 285 24 12 chr3 125816884 125817049 -101707529 - MIR SINE MIR -48 214 48 436 70 0 93 chr3 125817079 125817165 -101707413 - L1PA7 LINE L1 0 6154 6077 32 75 0 0 chr3 125818136 125818203 -101706375 + AT_rich Low_complexity Low_complexity 1 67 0 248 346 59 0 chr3 125818222 125818323 -101706255 - MIR SINE MIR -72 190 84 681 306 66 29 chr3 125818528 125819073 -101705505 - L1M4 LINE L1 -1667 4479 3915 239 301 66 71 chr3 125819224 125819407 -101705171 - L2 LINE L2 -463 2851 2670 234 62 0 0 chr3 125820005 125820037 -101704541 + (GA)n Simple_repeat Simple_repeat 1 32 0 182 326 0 0 chr3 125820253 125820302 -101704276 - L2 LINE L2 -1894 1420 1372 341 321 29 51 chr3 125820851 125820988 -101703590 + MIR3 SINE MIR 13 146 -62 251 261 0 14 chr3 125820989 125821058 -101703520 + GA-rich Low_complexity Low_complexity 1 68 0 241 235 0 0 chr3 125821237 125821288 -101703290 + CT-rich Low_complexity Low_complexity 3 53 0 1844 114 0 8 chr3 125822984 125823238 -101701340 - AluSx SINE Alu -15 297 46 3254 225 41 34 chr3 125823336 125824269 -101700309 - L1MC3 LINE L1 -83 7702 6764 191 197 213 0 chr3 125826124 125826185 -101698393 - MIR SINE MIR -118 144 71 * 251 349 40 13 chr3 125826171 125826320 -101698258 - L3b LINE CR1 -94 1489 1337 22 0 0 0 chr3 125827176 125827198 -101697380 + AT_rich Low_complexity Low_complexity 1 22 0 24085 173 31 24 chr3 125827210 125833559 -101691019 - L1PA10 LINE L1 -4 6479 10 473 302 47 17 chr3 125833805 125833977 -101690601 - MIR3 SINE MIR -11 197 21 282 308 19 28 chr3 125834332 125834439 -101690139 - MIR SINE MIR -16 246 141 343 349 15 8 chr3 125834912 125835044 -101689534 + L2 LINE L2 2896 3028 -244 224 304 19 41 chr3 125835120 125835258 -101689320 - MIR3 SINE MIR -1 207 8 24 0 0 0 chr3 125837382 125837406 -101687172 + AT_rich Low_complexity Low_complexity 1 24 0 369 0 0 0 chr3 125838309 125838350 -101686228 + (CA)n Simple_repeat Simple_repeat 1 41 0 4085 92 0 4 chr3 125839037 125839593 -101684985 - MER41A LTR ERV1 0 554 1 394 355 72 57 chr3 125839944 125840333 -101684245 - L2 LINE L2 0 3272 2878 2590 129 2 86 chr3 125841270 125841735 -101682843 - MSTB LTR MaLR 0 426 1 342 331 16 8 chr3 125842701 125842825 -101681753 - MIR SINE MIR -135 127 3 1007 129 6 0 chr3 125843037 125843200 -101681378 + L1MA5 LINE L1 6137 6300 0 459 248 0 0 chr3 125843794 125843915 -101680663 + (CATATA)n Simple_repeat Simple_repeat 3 123 0 219 36 0 0 chr3 125845502 125845530 -101679048 + (CA)n Simple_repeat Simple_repeat 2 29 0 3092 66 2 10 chr3 125846022 125846543 -101678035 + L1PA8A LINE L1 5516 6128 -3 230 247 68 0 chr3 125846550 125846623 -101677955 + HAL1b LINE L1 83 160 -1188 2083 112 41 0 chr3 125846824 125847118 -101677460 + AluSx SINE Alu 4 309 -3 5564 255 50 21 chr3 125848374 125849450 -101675128 + L1PBb LINE L1 709 1752 -4451 15172 27 0 0 chr3 125849450 125852039 -101672539 + L1PA3 LINE L1 3571 6152 -3 5564 255 50 21 chr3 125852039 125853093 -101671485 + L1PBb LINE L1 1752 2973 -3230 2439 159 14 5 chr3 125853098 125853531 -101671047 + L1PA16 LINE L1 5710 6146 -20 26 30 0 0 chr3 125853531 125853564 -101671014 + AT_rich Low_complexity Low_complexity 1 33 0 298 318 138 18 chr3 125853641 125853858 -101670720 + HAL1b LINE L1 300 542 -806 341 288 34 41 chr3 125853961 125854107 -101670471 + HAL1b LINE L1 685 829 -519 341 342 69 31 chr3 125854718 125854978 -101669600 + HAL1b LINE L1 449 718 -630 27 62 0 0 chr3 125855068 125855116 -101669462 + AT_rich Low_complexity Low_complexity 1 48 0 406 164 0 0 chr3 125855870 125855937 -101668641 - MER54B LTR ERVL -230 563 497 351 0 0 0 chr3 125855938 125855977 -101668601 + (TC)n Simple_repeat Simple_repeat 2 40 0 209 91 45 0 chr3 125856038 125856082 -101668496 + A-rich Low_complexity Low_complexity 4 49 0 3848 162 74 30 chr3 125856153 125856314 -101668264 - MER54B LTR ERVL 0 793 640 5055 134 3 6 chr3 125856314 125857097 -101667481 - LTR17 LTR ERV1 0 780 1 3848 162 74 30 chr3 125857097 125857695 -101666883 - MER54B LTR ERVL -153 640 1 353 324 104 29 chr3 125858172 125858450 -101666128 + HAL1b LINE L1 306 604 -744 524 343 23 23 chr3 125858580 125858927 -101665651 + L1 LINE L1 3112 3458 -2688 358 308 72 39 chr3 125859101 125859821 -101664757 + L1 LINE L1 3686 4429 -1717 2121 261 84 41 chr3 125859839 125860634 -101663944 + L1ME1 LINE L1 6 766 -5314 2157 27 0 19 chr3 125860634 125860892 -101663686 + AluY SINE Alu 53 305 -6 2121 261 84 41 chr3 125860892 125861561 -101663017 + L1ME1 LINE L1 766 1555 -4525 236 30 30 0 chr3 125861561 125861594 -101662984 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2121 261 84 41 chr3 125861594 125861977 -101662601 + L1ME1 LINE L1 1555 1920 -4160 1956 201 102 2 chr3 125861999 125862606 -101661972 + L1ME1 LINE L1 2487 3154 -2926 1520 226 134 17 chr3 125862698 125863344 -101661234 - L1MB8 LINE L1 -5 6173 5430 809 175 0 7 chr3 125863390 125863527 -101661051 + FLAM_C SINE Alu 2 137 -6 556 231 0 81 chr3 125863529 125863689 -101660889 + MER58B DNA MER1_type 195 341 0 446 264 176 31 chr3 125863689 125864041 -101660537 + L1ME1 LINE L1 3145 3547 -2533 2149 181 45 17 chr3 125864073 125864492 -101660086 + MLT1C LTR MaLR 37 467 0 2006 235 51 63 chr3 125864492 125865319 -101659259 + L1ME1 LINE L1 3556 4372 -1708 2898 239 60 26 chr3 125865383 125866601 -101657977 + L1ME1 LINE L1 4820 6095 -5 280 226 20 62 chr3 125866848 125866994 -101657584 + L1 LINE L1 4636 4775 -1305 2061 233 99 52 chr3 125867424 125868177 -101656401 + L1MCa LINE L1 1 772 -5273 1730 196 36 3 chr3 125868272 125868659 -101655919 + L1MCa LINE L1 782 1181 -4864 1039 137 72 6 chr3 125868659 125868875 -101655703 + LTR18B LTR ERVL 1 261 -96 1588 203 116 14 chr3 125868908 125869542 -101655036 + L1MCa LINE L1 1722 2321 -4243 972 186 183 56 chr3 125869624 125869946 -101654632 - MLT1A1 LTR MaLR 0 365 3 261 273 66 58 chr3 125870977 125871003 -101653575 + L2 LINE L2 3192 3216 -97 2382 171 29 2 chr3 125871003 125871418 -101653160 + MSTB LTR MaLR 1 426 0 261 273 66 58 chr3 125871418 125871512 -101653066 + L2 LINE L2 3216 3313 0 309 349 71 0 chr3 125872938 125873064 -101651514 - MIR3 SINE MIR -7 201 67 21 0 0 0 chr3 125873498 125873519 -101651059 + AT_rich Low_complexity Low_complexity 1 21 0 580 288 30 30 chr3 125876222 125876420 -101648158 + MIR3 SINE MIR 2 199 -9 580 308 24 72 chr3 125876559 125876809 -101647769 - MIR SINE MIR -8 254 17 29 0 0 0 chr3 125877199 125877228 -101647350 + AT_rich Low_complexity Low_complexity 1 29 0 201 121 0 0 chr3 125877883 125877916 -101646662 + (CA)n Simple_repeat Simple_repeat 2 34 0 23 33 0 0 chr3 125881898 125881928 -101642650 + AT_rich Low_complexity Low_complexity 1 30 0 254 283 43 87 chr3 125882084 125882222 -101642356 - MIR3 SINE MIR -65 143 12 564 316 18 36 chr3 125882240 125882465 -101642113 - MIR SINE MIR -24 238 18 4462 81 16 4 chr3 125882999 125884014 -101640564 + MER11A LTR ERVK 1 1266 0 1959 123 7 10 chr3 125884014 125884323 -101640255 + HERVK11 LTR ERVK 1 308 -7645 2406 55 0 0 chr3 125884326 125884633 -101639945 + HERVK11 LTR ERVK 2257 2563 -5390 3955 92 2 31 chr3 125884733 125885318 -101639260 + HERVK11 LTR ERVK 2967 3534 -4419 * 20096 74 3 2 chr3 125885308 125888002 -101636576 + HERVK11 LTR ERVK 5256 7953 0 4693 54 20 3 chr3 125888003 125889017 -101635561 + MER11A LTR ERVK 2 1266 0 204 203 94 78 chr3 125889034 125889098 -101635480 - MIR SINE MIR -177 85 21 258 156 0 0 chr3 125889142 125889187 -101635391 + (TA)n Simple_repeat Simple_repeat 2 46 0 1142 291 16 21 chr3 125889947 125890383 -101634195 - LTR16A LTR ERVL -16 434 1 1092 201 147 54 chr3 125890454 125890877 -101633701 + MLT1C LTR MaLR 6 467 0 806 281 99 13 chr3 125890932 125891245 -101633333 + LTR33 LTR ERVL 169 508 -13 331 294 12 0 chr3 125892006 125892091 -101632487 - L2 LINE L2 -5 3308 3223 512 305 108 16 chr3 125892091 125892396 -101632182 - LTR16C LTR ERVL -1 490 158 3852 198 31 25 chr3 125892588 125893432 -101631146 + MER21B LTR ERV1 1 849 -14 647 285 77 53 chr3 125893480 125893898 -101630680 - L2 LINE L2 -71 3242 2815 184 277 62 15 chr3 125894264 125894329 -101630249 + MIR SINE MIR 85 152 -56 441 281 0 44 chr3 125895194 125895308 -101629270 + MIR3 SINE MIR 87 195 -13 384 97 0 0 chr3 125895805 125895867 -101628711 + (TC)n Simple_repeat Simple_repeat 2 63 0 219 125 0 0 chr3 125896389 125896429 -101628149 + (TC)n Simple_repeat Simple_repeat 1 40 0 25 83 0 0 chr3 125896449 125896509 -101628069 + AT_rich Low_complexity Low_complexity 1 60 0 226 335 147 35 chr3 125897233 125897546 -101627032 + L2 LINE L2 2620 2967 -347 28 48 0 0 chr3 125902109 125902151 -101622427 + AT_rich Low_complexity Low_complexity 1 42 0 2375 93 0 6 chr3 125902684 125902995 -101621583 - AluSc SINE Alu 0 309 1 413 285 57 0 chr3 125903000 125903123 -101621455 + MIR SINE MIR 83 212 -50 504 295 127 72 chr3 125904196 125904868 -101619710 - L2 LINE L2 -215 3057 2367 437 34 17 0 chr3 125905441 125905500 -101619078 + (CA)n Simple_repeat Simple_repeat 2 61 0 386 352 70 33 chr3 125905589 125905802 -101618776 + MIR SINE MIR 36 256 -6 298 313 99 24 chr3 125907424 125907635 -101616943 - L2 LINE L2 -5 3308 3082 250 170 0 19 chr3 125907697 125907750 -101616828 + CT-rich Low_complexity Low_complexity 5 56 0 1600 362 113 35 chr3 125907800 125910000 -101614578 - L2 LINE L2 -359 2955 586 349 203 25 0 chr3 125910029 125910108 -101614470 + MLT1A1 LTR MaLR 1 81 -347 1600 70 33 0 chr3 125910108 125910321 -101614257 - L1PA11 LINE L1 -1 6173 5954 2866 74 17 2 chr3 125910328 125910748 -101613830 - L1PA11 LINE L1 -495 5679 5254 578 248 10 40 chr3 125910882 125911080 -101613498 + MLT1A1 LTR MaLR 174 365 0 * 1004 212 10 5 chr3 125911080 125911275 -101613303 - MER58A DNA MER1_type -28 196 1 193 214 54 71 chr3 125911320 125911376 -101613202 - L3 LINE CR1 -467 1110 1056 483 270 87 4 chr3 125911466 125911707 -101612871 - L1MC5 LINE L1 -79 7882 7622 985 222 93 73 chr3 125911715 125912390 -101612188 - L1MC5 LINE L1 -366 7595 6907 388 259 86 7 chr3 125912429 125912568 -101612010 - L1M4 LINE L1 -891 6066 5917 478 343 81 11 chr3 125912714 125913061 -101611517 - L1MDb LINE L1 -5042 1367 997 3563 133 8 6 chr3 125913209 125913735 -101610843 - MER1A DNA MER1_type 0 527 1 1342 255 54 81 chr3 125913840 125914762 -101609816 - L1ME LINE L1 -4551 2408 1558 * 14690 22 0 0 chr3 125914756 125917743 -101606835 - L1PA2 LINE L1 0 6155 3167 4027 76 0 12 chr3 125917839 125918352 -101606226 - L1PA8 LINE L1 -1 6171 5665 34067 38 31 2 chr3 125918459 125922590 -101601988 - L1P LINE L1 -1892 4254 2 598 207 87 0 chr3 125922592 125922742 -101601836 - L1ME LINE L1 -5350 1509 1347 1195 203 101 73 chr3 125923245 125923600 -101600978 - MLT1A1 LTR MaLR 0 365 1 350 293 86 31 chr3 125923799 125924021 -101600557 - L1ME LINE L1 -6615 244 11 412 291 141 34 chr3 125924105 125924432 -101600146 - HAL1b LINE L1 -606 742 381 26 64 0 0 chr3 125924527 125924574 -101600004 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr3 125924817 125924838 -101599740 + AT_rich Low_complexity Low_complexity 1 21 0 30 69 0 0 chr3 125925872 125925930 -101598648 + AT_rich Low_complexity Low_complexity 1 58 0 465 372 10 5 chr3 125926077 125926273 -101598305 - L2 LINE L2 -2810 504 308 197 81 0 27 chr3 125926358 125926395 -101598183 + (TA)n Simple_repeat Simple_repeat 1 36 0 225 280 40 98 chr3 125926564 125926789 -101597789 + L1ME LINE L1 5600 5811 -310 1988 147 16 3 chr3 125927203 125927509 -101597069 + L1MC1 LINE L1 6014 6323 -10 264 180 0 0 chr3 125928598 125928648 -101595930 - Charlie8 DNA MER1_type -2265 152 103 22 0 0 0 chr3 125928750 125928772 -101595806 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr3 125929619 125929651 -101594927 + AT_rich Low_complexity Low_complexity 1 32 0 195 100 0 0 chr3 125931094 125931124 -101593454 + (TCC)n Simple_repeat Simple_repeat 2 31 0 184 299 0 15 chr3 125931447 125931514 -101593064 + L2 LINE L2 2911 2976 -337 181 73 24 24 chr3 125931544 125931585 -101592993 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 207 308 62 0 chr3 125931603 125931668 -101592910 + L2 LINE L2 3204 3272 0 1277 207 19 0 chr3 125932391 125932647 -101591931 + LTR43 LTR ERV1 176 436 -166 209 289 132 26 chr3 125933775 125933851 -101590727 - L2 LINE L2 -203 3069 2986 1394 166 26 0 chr3 125934595 125934824 -101589754 + MER46A DNA MER2_type 2 236 0 29 47 0 0 chr3 125935098 125935141 -101589437 + AT_rich Low_complexity Low_complexity 1 43 0 1868 151 0 36 chr3 125935143 125935448 -101589130 - AluJb SINE Alu -18 294 1 266 307 11 23 chr3 125935511 125935599 -101588979 + MIR SINE MIR 5 91 -171 798 172 41 12 chr3 125935600 125935769 -101588809 + MER96B DNA MER1_type? 2 175 -242 1164 168 65 119 chr3 125935931 125936317 -101588261 - MLT1A1 LTR MaLR 0 365 1 24 0 0 0 chr3 125936859 125936883 -101587695 + AT_rich Low_complexity Low_complexity 1 24 0 250 249 43 108 chr3 125938311 125938451 -101586127 + MER5B DNA MER1_type 27 146 -32 375 164 109 82 chr3 125938781 125938891 -101585687 - MER96B DNA MER1_type? -1 174 62 180 338 27 0 chr3 125939288 125939362 -101585216 + MIR SINE MIR 175 250 -12 2965 121 16 21 chr3 125939820 125940250 -101584328 - MSTC LTR MaLR 0 428 1 268 264 0 28 chr3 125941001 125941073 -101583505 + C-rich Low_complexity Low_complexity 4 73 0 1007 256 74 11 chr3 125942171 125942440 -101582138 - LTR16C LTR ERVL 0 491 206 2422 95 86 0 chr3 125942921 125943246 -101581332 - THE1A LTR MaLR 0 355 3 12298 106 1 1 chr3 125943248 125944827 -101579751 - THE1A-int LTR MaLR 0 1580 2 2827 102 3 0 chr3 125944828 125945182 -101579396 - THE1A LTR MaLR 0 355 1 275 306 45 18 chr3 125945422 125945533 -101579045 + L2 LINE L2 3170 3283 -30 43 0 0 0 chr3 125945540 125945583 -101578995 + AT_rich Low_complexity Low_complexity 1 43 0 632 267 52 29 chr3 125946307 125946517 -101578061 + MIR SINE MIR 48 262 0 2228 117 63 23 chr3 125946856 125947206 -101577372 - THE1B LTR MaLR 0 364 1 10369 93 16 106 chr3 125947206 125948944 -101575634 - THE1B-int LTR MaLR 0 1580 1 519 118 0 13 chr3 125948944 125949020 -101575558 - THE1B LTR MaLR 0 375 301 * 685 124 127 7 chr3 125949013 125949151 -101575427 - THE1B LTR MaLR -192 183 1 2449 78 3 0 chr3 125949298 125949607 -101574971 - AluY SINE Alu -1 310 1 329 328 73 11 chr3 125949965 125950142 -101574436 - MIR SINE MIR -42 220 33 394 328 89 17 chr3 125950147 125950382 -101574196 + MIR SINE MIR 1 252 -10 324 341 108 11 chr3 125950483 125950659 -101573919 + MIR SINE MIR 21 213 -49 2376 96 0 0 chr3 125951450 125951753 -101572825 + AluSc SINE Alu 1 303 -6 252 281 7 39 chr3 125952928 125953081 -101571497 + CT-rich Low_complexity Low_complexity 2 149 0 287 163 50 0 chr3 125956045 125956125 -101568453 + (TA)n Simple_repeat Simple_repeat 2 85 0 2215 119 0 0 chr3 125956237 125956580 -101567998 + AluSx SINE Alu 1 343 0 23 54 0 0 chr3 125957765 125957802 -101566776 + AT_rich Low_complexity Low_complexity 1 37 0 191 182 136 0 chr3 125957805 125957849 -101566729 + MIR SINE MIR 30 79 -129 2390 46 0 0 chr3 125959315 125959625 -101564953 - AluY SINE Alu 0 310 1 21 36 0 0 chr3 125959712 125959740 -101564838 + AT_rich Low_complexity Low_complexity 1 28 0 2158 128 0 3 chr3 125959795 125960092 -101564486 + AluSq SINE Alu 1 296 -17 1650 231 52 36 chr3 125961636 125962517 -101562061 + L1ME2 LINE L1 4912 6154 -10 641 162 30 3 chr3 125962812 125963048 -101561530 - AluJb SINE Alu -3 309 1 306 0 0 0 chr3 125964796 125964830 -101559748 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 405 291 123 32 chr3 125970506 125970726 -101553852 + MIR SINE MIR 7 246 -16 201 129 0 0 chr3 125970982 125971013 -101553565 + (TC)n Simple_repeat Simple_repeat 2 32 0 183 42 0 0 chr3 125971015 125971039 -101553539 + (TG)n Simple_repeat Simple_repeat 2 25 0 561 225 81 2 chr3 125971307 125971627 -101552951 - MER113 DNA MER1_type? -5 516 115 413 254 124 23 chr3 125973180 125973357 -101551221 + L3 LINE CR1 1067 1261 -316 326 244 228 0 chr3 125973396 125973523 -101551055 - MIR3 SINE MIR -21 187 32 181 357 0 0 chr3 125973570 125973626 -101550952 + L3 LINE CR1 1313 1368 -209 2652 172 64 19 chr3 125973703 125973975 -101550603 - MLT1D LTR MaLR 0 505 200 2278 65 3 10 chr3 125973975 125974266 -101550312 - AluY SINE Alu -2 309 21 2652 172 64 19 chr3 125974266 125974476 -101550102 - MLT1D LTR MaLR -305 200 1 291 315 146 0 chr3 125974524 125974613 -101549965 + MIR SINE MIR 48 149 -113 206 300 75 12 chr3 125974731 125974811 -101549767 + L3 LINE CR1 1483 1567 -10 785 179 16 0 chr3 125976911 125977034 -101547544 + FLAM_C SINE Alu 2 126 -17 261 287 81 11 chr3 125977292 125977379 -101547199 - MIR SINE MIR -146 116 24 1799 173 0 10 chr3 125981136 125981436 -101543142 + AluJb SINE Alu 1 297 -15 436 289 148 0 chr3 125981919 125982068 -101542510 - MER5A DNA MER1_type -12 177 7 856 230 80 33 chr3 125982714 125982927 -101541651 - MER58A DNA MER1_type 0 224 2 244 357 96 36 chr3 125984327 125984576 -101540002 + L2 LINE L2 3009 3272 0 562 258 19 13 chr3 125984890 125985049 -101539529 - L1MB8 LINE L1 0 6178 6019 385 292 55 36 chr3 125985331 125985550 -101539028 - L1MB8 LINE L1 -376 5745 5523 494 248 15 23 chr3 125987067 125987200 -101537378 - L2 LINE L2 -2 3311 3180 237 191 24 83 chr3 125987204 125987288 -101537290 + L1MC4 LINE L1 6636 6714 -1328 240 35 0 0 chr3 125987308 125987337 -101537241 + (CA)n Simple_repeat Simple_repeat 2 30 0 1133 248 192 21 chr3 125987342 125987962 -101536616 - L2 LINE L2 -165 3148 2417 762 208 79 83 chr3 125988201 125988441 -101536137 - MIR SINE MIR 0 262 24 2147 120 13 3 chr3 125988966 125989274 -101535304 + AluSx SINE Alu 1 311 -1 265 270 90 11 chr3 125990555 125990644 -101533934 - MIR SINE MIR -159 103 8 321 248 49 50 chr3 125991128 125991275 -101533303 - MIR SINE MIR -69 139 41 1324 168 9 18 chr3 125993736 125993956 -101530622 - MER20 DNA MER1_type 0 219 2 561 244 0 0 chr3 125994303 125994422 -101530156 + L2 LINE L2 3193 3311 -2 180 347 51 45 chr3 125994579 125994755 -101529823 + L2 LINE L2 2877 3053 -219 2038 105 3 22 chr3 125995439 125995753 -101528825 - AluSx SINE Alu -4 308 1 895 136 8 0 chr3 125995753 125995885 -101528693 - AluSc SINE Alu -175 134 2 1009 223 0 24 chr3 125996096 125996302 -101528276 + MLT1A2 LTR MaLR 174 374 0 1277 163 101 0 chr3 125996302 125996559 -101528019 + MLT1A2-int LTR MaLR 1 283 -1088 2152 131 0 0 chr3 125998223 125998514 -101526064 - AluSg SINE Alu -19 291 1 292 203 17 0 chr3 125998520 125998579 -101525999 + MLT1A2-int LTR MaLR 676 735 -1000 1916 234 36 36 chr3 125998657 125998848 -101525730 + MLT1A2-int LTR MaLR 1287 1477 -258 180 0 0 0 chr3 125998848 125998868 -101525710 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1916 234 36 36 chr3 125998868 125999121 -101525457 + MLT1A2-int LTR MaLR 1476 1731 -4 591 178 99 20 chr3 125999126 125999278 -101525300 + MLT1A2 LTR MaLR 8 171 -219 1288 166 40 6 chr3 125999307 125999686 -101524892 + L1M4 LINE L1 5086 5478 -696 1039 305 25 3 chr3 126000002 126000284 -101524294 - LTR16C LTR ERVL -65 426 139 6978 42 4 0 chr3 126000300 126001092 -101523486 + L1PA5 LINE L1 5358 6152 -2 222 233 0 47 chr3 126001402 126001488 -101523090 + (CCCG)n Simple_repeat Simple_repeat 2 83 0 1946 222 179 14 chr3 126002403 126002890 -101521688 - MLT1F1 LTR MaLR 0 567 1 315 224 145 0 chr3 126002966 126003042 -101521536 - MIR SINE MIR -109 153 67 251 317 13 28 chr3 126003619 126003887 -101520691 + C-rich Low_complexity Low_complexity 1 264 0 207 139 0 0 chr3 126006759 126006795 -101517783 + (TG)n Simple_repeat Simple_repeat 2 37 0 1114 275 64 58 chr3 126007007 126007473 -101517105 + L2 LINE L2 2845 3313 0 300 313 0 12 chr3 126007784 126007867 -101516711 + MIR SINE MIR 23 104 -158 7427 182 111 37 chr3 126007868 126009503 -101515075 + MER52A LTR ERV1 1 1755 0 216 337 32 0 chr3 126009510 126009605 -101514973 + MIR SINE MIR 111 208 -54 2375 68 47 3 chr3 126009750 126010046 -101514532 - AluY SINE Alu -2 309 1 21 0 0 0 chr3 126010143 126010164 -101514414 + AT_rich Low_complexity Low_complexity 1 21 0 402 272 283 18 chr3 126011249 126011521 -101513057 + L2 LINE L2 2928 3271 -1 294 210 16 0 chr3 126013544 126013606 -101510972 - MIR SINE MIR -18 244 182 579 260 0 0 chr3 126014568 126014695 -101509883 + L2 LINE L2 3187 3313 0 248 254 169 0 chr3 126014776 126014847 -101509731 + MIR3 SINE MIR 112 194 -14 183 179 51 0 chr3 126015622 126015661 -101508917 - L2 LINE L2 -2 3311 3271 440 309 179 30 chr3 126015681 126015982 -101508596 - L2 LINE L2 -14 3299 2954 936 282 81 52 chr3 126016617 126017197 -101507381 + L1ME3A LINE L1 4809 5371 -799 2508 58 6 19 chr3 126017197 126017508 -101507070 + AluY SINE Alu 1 307 -4 936 282 81 52 chr3 126017508 126018056 -101506522 + L1ME3A LINE L1 5371 5948 -222 21221 176 18 17 chr3 126018316 126024072 -101500506 + L1PA11 LINE L1 787 7356 -256 3589 151 26 10 chr3 126024073 126024688 -101499890 - Tigger1 DNA MER2_type -1739 679 55 1167 278 52 4 chr3 126026359 126026820 -101497758 + Charlie4a DNA MER1_type 26 508 0 22 0 0 0 chr3 126026864 126026886 -101497692 + AT_rich Low_complexity Low_complexity 1 22 0 260 125 0 36 chr3 126027920 126027976 -101496602 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 282 277 214 0 chr3 126028478 126028590 -101495988 - L2 LINE L2 -4 3268 3133 215 167 227 0 chr3 126028793 126028859 -101495719 - MIR SINE MIR -108 154 74 1719 192 3 52 chr3 126029856 126030242 -101494336 + MLT1B LTR MaLR 24 390 0 257 308 185 0 chr3 126030258 126030388 -101494190 + MIR SINE MIR 85 238 -24 286 253 55 11 chr3 126031131 126031222 -101493356 - MIR SINE MIR -23 239 145 1076 68 0 0 chr3 126031308 126031440 -101493138 + AluY SINE Alu 1 132 -179 2116 128 7 0 chr3 126031721 126032011 -101492567 + AluSp SINE Alu 5 296 -17 23 0 0 0 chr3 126032488 126032511 -101492067 + AT_rich Low_complexity Low_complexity 1 23 0 328 267 0 13 chr3 126034986 126035061 -101489517 - L2 LINE L2 -1 3271 3198 370 278 102 0 chr3 126035818 126035994 -101488584 + L1PB1 LINE L1 6 199 -6664 * 13054 191 19 28 chr3 126035991 126039315 -101485263 + L1PB1 LINE L1 652 4145 -2722 1983 158 0 0 chr3 126039315 126039618 -101484960 + AluSg SINE Alu 6 308 -2 13054 191 19 28 chr3 126039618 126042316 -101482262 + L1PB1 LINE L1 4145 6866 -1 435 283 59 5 chr3 126042960 126043147 -101481431 + L1MC4a LINE L1 5696 5892 -1916 4415 122 16 43 chr3 126043234 126044032 -101480546 + L1PA15 LINE L1 5389 6165 0 217 225 217 85 chr3 126044538 126044667 -101479911 - MIR3 SINE MIR -52 156 11 506 227 65 103 chr3 126047472 126047657 -101476921 + MER5B DNA MER1_type 1 178 0 504 223 10 0 chr3 126047711 126047814 -101476764 + MLT1F LTR MaLR 1 104 -438 430 198 158 0 chr3 126047817 126047918 -101476660 - MER96 DNA MER1_type? -3 172 56 1565 194 33 76 chr3 126047957 126048087 -101476491 + MLT1F LTR MaLR 139 273 -269 2452 74 0 6 chr3 126048087 126048398 -101476180 + AluY SINE Alu 1 309 -2 1565 194 33 76 chr3 126048398 126048689 -101475889 + MLT1F LTR MaLR 273 542 0 297 306 194 7 chr3 126050025 126050169 -101474409 - MIR3 SINE MIR -7 201 31 294 29 0 0 chr3 126050262 126050297 -101474281 - U2 snRNA snRNA -153 35 1 400 296 0 6 chr3 126052159 126052321 -101472257 + L1MC4a LINE L1 3806 3966 -2180 232 173 0 27 chr3 126052391 126052466 -101472112 + (TA)n Simple_repeat Simple_repeat 2 74 0 318 232 159 22 chr3 126052516 126052654 -101471924 + L1MC4a LINE L1 5116 5272 -874 2028 257 24 15 chr3 126052664 126053406 -101471172 + L1MC4a LINE L1 5256 6004 -1804 245 300 99 17 chr3 126053419 126053652 -101470926 + L1MC4a LINE L1 6044 6295 -1513 2154 108 11 0 chr3 126053691 126053968 -101470610 + AluSg SINE Alu 14 293 -17 443 278 56 43 chr3 126054095 126054329 -101470249 + L1MC4a LINE L1 6378 6614 -1194 315 211 26 0 chr3 126054365 126054441 -101470137 - L1MC4 LINE L1 -599 7443 7366 2168 271 36 45 chr3 126054469 126055351 -101469227 + L1MC4 LINE L1 6662 7535 -507 2772 223 73 6 chr3 126055351 126056170 -101468408 - L1 LINE L1 -2416 3730 2857 5667 208 14 4 chr3 126056170 126057495 -101467083 + L1 LINE L1 3742 5079 -1067 1933 141 136 21 chr3 126057497 126057879 -101466699 - MSTA LTR MaLR -2 426 1 8933 144 11 30 chr3 126057888 126059486 -101465092 - MSTA-int LTR MaLR -10 1570 3 1612 165 112 73 chr3 126059488 126059900 -101464678 - MSTA LTR MaLR 0 428 1 4818 144 53 17 chr3 126059900 126060294 -101464284 + L1PA16 LINE L1 5075 5453 -713 2272 88 0 7 chr3 126060294 126060591 -101463987 - AluY SINE Alu -16 295 1 4818 144 53 17 chr3 126060591 126061220 -101463358 + L1PA16 LINE L1 5453 6166 0 665 239 139 29 chr3 126061244 126061554 -101463024 + L1MC4 LINE L1 7546 7889 -153 192 231 0 0 chr3 126061569 126061621 -101462957 + (CATA)n Simple_repeat Simple_repeat 1 52 0 278 192 46 126 chr3 126061624 126061714 -101462864 + L1MC4 LINE L1 7904 7979 -63 321 26 0 0 chr3 126061714 126061752 -101462826 + (TG)n Simple_repeat Simple_repeat 2 39 0 278 192 46 126 chr3 126061752 126061812 -101462766 + L1MC4 LINE L1 7979 8042 0 5245 185 86 40 chr3 126062072 126063420 -101461158 + MER52A LTR ERV1 379 1755 0 254 26 53 0 chr3 126063922 126063960 -101460618 + (TAAAAA)n Simple_repeat Simple_repeat 2 41 0 6717 24 1 5 chr3 126064504 126065343 -101459235 - L1PA2 LINE L1 0 6155 5320 323 320 32 32 chr3 126065540 126065696 -101458882 + MER5A DNA MER1_type 27 182 -7 24 32 0 0 chr3 126066224 126066255 -101458323 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 126066411 126066432 -101458146 + GC_rich Low_complexity Low_complexity 1 21 0 31 76 0 0 chr3 126066535 126066601 -101457977 + GC_rich Low_complexity Low_complexity 1 66 0 278 182 55 0 chr3 126066794 126066849 -101457729 - MIR SINE MIR -115 147 90 21 71 0 0 chr3 126069564 126069606 -101454972 + AT_rich Low_complexity Low_complexity 1 42 0 716 204 51 13 chr3 126070295 126070452 -101454126 - FRAM SINE Alu -13 163 1 28 0 0 0 chr3 126071038 126071066 -101453512 + AT_rich Low_complexity Low_complexity 1 28 0 1267 232 150 35 chr3 126071188 126071641 -101452937 + MLT1D LTR MaLR 1 505 0 25 65 0 0 chr3 126071687 126071733 -101452845 + AT_rich Low_complexity Low_complexity 1 46 0 405 263 91 0 chr3 126072388 126072563 -101452015 + L2 LINE L2 1720 1910 -1404 2346 86 3 3 chr3 126072603 126072907 -101451671 + AluSq SINE Alu 1 304 -9 2710 165 38 13 chr3 126072910 126073516 -101451062 + L1PA16 LINE L1 5325 5945 -221 327 49 0 0 chr3 126074016 126074057 -101450521 + (TG)n Simple_repeat Simple_repeat 2 42 0 589 208 81 9 chr3 126076864 126077009 -101447569 + MIR SINE MIR 40 192 -63 25 31 0 0 chr3 126077549 126077581 -101446997 + AT_rich Low_complexity Low_complexity 1 32 0 357 256 45 0 chr3 126077801 126077901 -101446677 + MER5A DNA MER1_type 4 106 -83 305 176 78 0 chr3 126078009 126078060 -101446518 - L2 LINE L2 -9 3263 3209 2276 90 3 3 chr3 126078273 126078572 -101446006 - AluSc SINE Alu -10 299 1 181 184 0 53 chr3 126079709 126079747 -101444831 + MIR SINE MIR 114 149 -113 606 284 121 0 chr3 126083078 126083293 -101441285 - MIR SINE MIR -1 261 21 261 236 28 0 chr3 126083439 126083511 -101441067 + (TA)n Simple_repeat Simple_repeat 2 75 0 293 336 25 0 chr3 126084241 126084360 -101440218 + MIR3 SINE MIR 78 199 -9 810 232 33 77 chr3 126086287 126086540 -101438038 + MIR SINE MIR 14 262 0 202 203 40 27 chr3 126087137 126087211 -101437367 + (CA)n Simple_repeat Simple_repeat 1 75 0 237 259 19 0 chr3 126088544 126088598 -101435980 - L2 LINE L2 -2 3270 3216 219 364 44 39 chr3 126088833 126089039 -101435539 - L2 LINE L2 -370 2944 2738 743 353 31 62 chr3 126089155 126089606 -101434972 - L2 LINE L2 -1 3271 2835 2309 104 0 0 chr3 126089640 126089937 -101434641 + AluSc SINE Alu 1 297 -12 2295 117 0 0 chr3 126089962 126090262 -101434316 + AluSx SINE Alu 1 300 -12 431 303 168 42 chr3 126090291 126090677 -101433901 - L2 LINE L2 -569 2745 2311 245 381 90 0 chr3 126092894 126093028 -101431550 - L2 LINE L2 -4 3268 3123 1837 149 54 7 chr3 126093471 126093767 -101430811 - AluJo SINE Alu -2 310 1 443 294 25 0 chr3 126093849 126093968 -101430610 + MIR SINE MIR 49 170 -92 1504 258 111 19 chr3 126094030 126094542 -101430036 - MER77 LTR ERV1 -7 598 40 199 357 68 34 chr3 126094890 126095125 -101429453 - L2 LINE L2 -182 3090 2848 542 286 39 0 chr3 126095742 126095896 -101428682 - MIR SINE MIR -10 252 93 254 368 58 32 chr3 126097085 126097240 -101427338 - MIR3 SINE MIR -6 202 44 622 322 33 5 chr3 126097512 126097723 -101426855 + MIR SINE MIR 33 249 -13 2353 41 10 10 chr3 126097838 126098133 -101426445 - AluY SINE Alu -16 295 1 180 0 0 0 chr3 126101354 126101374 -101423204 + (A)n Simple_repeat Simple_repeat 1 20 0 936 237 32 11 chr3 126101456 126101734 -101422844 - MER44D DNA MER2_type 0 605 267 1351 197 12 8 chr3 126101892 126102151 -101422427 - MER44D DNA MER2_type -444 261 2 27 29 0 0 chr3 126102622 126102656 -101421922 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr3 126104070 126104092 -101420486 + AT_rich Low_complexity Low_complexity 1 22 0 891 241 82 4 chr3 126104351 126104583 -101419995 - MIR SINE MIR 0 262 13 343 182 9 64 chr3 126104986 126105096 -101419482 - MER106B DNA MER1_type -7 1052 949 415 218 94 112 chr3 126106230 126106400 -101418178 - MER5B DNA MER1_type -9 169 3 573 191 101 56 chr3 126107353 126107531 -101417047 - MIR SINE MIR 0 262 77 274 335 135 45 chr3 126107654 126108417 -101416161 - L2 LINE L2 -453 2861 2030 186 43 0 0 chr3 126109368 126109391 -101415187 + (TCCTG)n Simple_repeat Simple_repeat 5 27 0 2466 152 12 31 chr3 126110750 126111008 -101413570 - L1MA5 LINE L1 0 6300 6054 2088 124 7 13 chr3 126111008 126111307 -101413271 - AluSx SINE Alu -15 297 1 2466 152 12 31 chr3 126111307 126111530 -101413048 - L1MA5 LINE L1 -246 6054 5828 2961 237 22 33 chr3 126111650 126112712 -101411866 - L1 LINE L1 -2347 3799 2750 190 349 71 40 chr3 126114142 126114340 -101410238 - L2 LINE L2 -1122 2192 1989 216 173 27 133 chr3 126114475 126114550 -101410028 - MIR SINE MIR -111 151 85 1423 224 130 70 chr3 126114784 126115386 -101409192 - MLT1E1 LTR MaLR -16 638 1 616 209 29 44 chr3 126116229 126116435 -101408143 + MLT2D LTR ERVL 1 203 -211 243 271 93 21 chr3 126117535 126117675 -101406903 - MIR SINE MIR -49 213 64 887 167 127 32 chr3 126118174 126118329 -101406249 + L1PB4 LINE L1 5908 6092 -64 2724 194 71 41 chr3 126118329 126119035 -101405543 + LTR8A LTR ERV1 1 727 0 887 167 127 32 chr3 126119035 126119100 -101405478 + L1PB4 LINE L1 6092 6149 -7 764 270 14 30 chr3 126120627 126120658 -101403920 + L1MC4a LINE L1 5681 5711 -450 2261 98 7 3 chr3 126120658 126120954 -101403624 - AluSq SINE Alu -14 299 3 764 270 14 30 chr3 126120954 126121186 -101403392 + L1MC4a LINE L1 5711 5822 -339 1201 220 215 14 chr3 126121302 126121748 -101402830 - L1MC/D LINE L1 -2019 5789 5254 1584 153 4 0 chr3 126121802 126122037 -101402541 - AluJb SINE Alu -49 263 28 235 339 57 11 chr3 126122176 126122353 -101402225 + HAL1 LINE L1 1581 1765 -742 21 57 0 0 chr3 126122584 126122619 -101401959 + AT_rich Low_complexity Low_complexity 1 35 0 2513 171 24 6 chr3 126122656 126123125 -101401453 + L1MB1 LINE L1 5470 5946 -222 1050 133 44 6 chr3 126123117 126123298 -101401280 + L1PA15-16 LINE L1 2380 2567 -4282 * 2096 110 7 3 chr3 126124930 126125220 -101399358 + AluSx SINE Alu 1 291 -21 180 0 0 0 chr3 126125225 126125245 -101399333 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 23 0 0 0 chr3 126126093 126126116 -101398462 + GC_rich Low_complexity Low_complexity 1 23 0 33 87 0 0 chr3 126126186 126126232 -101398346 + GC_rich Low_complexity Low_complexity 1 46 0 191 310 109 58 chr3 126126471 126126645 -101397933 - MER5A DNA MER1_type 0 189 7 302 115 19 0 chr3 126126873 126126925 -101397653 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 190 356 0 0 chr3 126126950 126126995 -101397583 - L2 LINE L2 -86 3186 3142 770 214 106 26 chr3 126127236 126127539 -101397039 - MER2 DNA MER2_type -1 344 18 619 329 70 12 chr3 126128449 126128692 -101395886 - MIR SINE MIR 0 262 6 342 0 0 0 chr3 126129305 126129343 -101395235 + (CA)n Simple_repeat Simple_repeat 2 39 0 297 51 0 0 chr3 126129343 126129382 -101395196 + (CAT)n Simple_repeat Simple_repeat 1 39 0 221 311 108 0 chr3 126130070 126130144 -101394434 - L2 LINE L2 -5 3267 3186 4083 190 32 12 chr3 126130893 126131705 -101392873 + Tigger6a DNA MER2_type 24 851 -232 1085 141 0 0 chr3 126132002 126132165 -101392413 - AluSq SINE Alu -17 296 134 453 62 0 0 chr3 126132171 126132236 -101392342 + (TATG)n Simple_repeat Simple_repeat 2 66 0 2198 105 0 10 chr3 126132236 126132523 -101392055 - AluSx SINE Alu -26 286 1 546 218 84 32 chr3 126132567 126132847 -101391731 + MER67C LTR ERV1 15 303 -368 9428 45 31 4 chr3 126133200 126134454 -101390124 + L1P LINE L1 3684 4971 -1175 1744 218 169 9 chr3 126134743 126135316 -101389262 - L1 LINE L1 -2416 3730 3066 298 331 20 7 chr3 126185681 126185829 -101338749 - L1ME4a LINE L1 0 6121 5972 522 309 0 23 chr3 126185874 126186049 -101338529 - L2 LINE L2 -706 2608 2438 1044 227 25 54 chr3 126186081 126186358 -101338220 - Tigger2 DNA MER2_type 0 2718 2450 267 243 14 0 chr3 126186360 126186430 -101338148 - L1PA7 LINE L1 -16 6138 6068 641 264 156 4 chr3 126187189 126187208 -101337370 + L1MC4 LINE L1 7592 7607 -435 207 0 0 0 chr3 126187208 126187231 -101337347 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 641 264 156 4 chr3 126187231 126187480 -101337098 + L1MC4 LINE L1 7607 7901 -141 226 135 77 19 chr3 126187482 126187534 -101337044 + L1MC4 LINE L1 7986 8040 -2 311 257 91 57 chr3 126187615 126187790 -101336788 - L1 LINE L1 -1921 4225 4045 272 111 0 0 chr3 126187841 126187877 -101336701 + U2 snRNA snRNA 1 36 -152 216 0 0 0 chr3 126187960 126187984 -101336594 + (T)n Simple_repeat Simple_repeat 1 24 0 1762 171 7 14 chr3 126187986 126188278 -101336300 + AluJo SINE Alu 2 291 -21 21 0 0 0 chr3 126188282 126188303 -101336275 + AT_rich Low_complexity Low_complexity 1 21 0 633 249 73 13 chr3 126188303 126188536 -101336042 - L1 LINE L1 -2212 3934 3688 416 297 88 16 chr3 126188679 126188861 -101335717 + MIR SINE MIR 61 255 -7 31 0 0 0 chr3 126189092 126189123 -101335455 + AT_rich Low_complexity Low_complexity 1 31 0 1413 94 0 21 chr3 126189128 126189319 -101335259 - AluSg/x SINE Alu -21 291 105 544 274 100 12 chr3 126189964 126190205 -101334373 + MIR SINE MIR 1 262 0 1803 162 6 38 chr3 126190279 126190594 -101333984 - L1MC1 LINE L1 -13 6320 6016 4011 174 95 22 chr3 126190602 126191419 -101333159 - L1MB8 LINE L1 0 6178 5287 1705 175 3 7 chr3 126191419 126191711 -101332867 - AluJo SINE Alu -21 291 1 4011 174 95 22 chr3 126191711 126191854 -101332724 - L1MB8 LINE L1 -891 5287 5156 220 324 108 36 chr3 126192019 126192269 -101332309 + L2 LINE L2 1442 1709 -1605 427 324 103 59 chr3 126192291 126192698 -101331880 + L2 LINE L2 2271 2695 -619 282 323 23 31 chr3 126192769 126192899 -101331679 + MIR SINE MIR 74 202 -60 2481 84 0 7 chr3 126193093 126193403 -101331175 + AluSg SINE Alu 2 309 -1 362 132 0 236 chr3 126194703 126194847 -101329731 - MLT2C2 LTR ERVL -7 457 348 412 318 14 7 chr3 126195281 126195429 -101329149 - L2 LINE L2 -6 3307 3159 1684 162 13 134 chr3 126196668 126197064 -101327514 + MER7A DNA MER2_type 1 346 0 182 62 31 0 chr3 126197177 126197209 -101327369 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1633 167 18 18 chr3 126197213 126197488 -101327090 - AluJo SINE Alu -37 275 1 2921 134 14 45 chr3 126197679 126197884 -101326694 + L1PB3 LINE L1 5664 5874 -280 2528 58 0 0 chr3 126197884 126198178 -101326400 - AluY SINE Alu -17 294 1 2921 134 14 45 chr3 126198178 126198478 -101326100 + L1PB3 LINE L1 5874 6153 -1 1268 201 22 4 chr3 126198549 126198778 -101325800 + AluJo SINE Alu 49 281 -31 2488 76 0 0 chr3 126198931 126199234 -101325344 + AluY SINE Alu 1 303 -8 216 67 0 0 chr3 126200283 126200313 -101324265 + (TC)n Simple_repeat Simple_repeat 1 30 0 186 145 60 12 chr3 126200314 126200397 -101324181 + (TA)n Simple_repeat Simple_repeat 1 87 0 303 28 0 0 chr3 126200771 126200807 -101323771 + (CA)n Simple_repeat Simple_repeat 2 37 0 24 77 0 0 chr3 126201077 126201129 -101323449 + AT_rich Low_complexity Low_complexity 1 52 0 2143 116 14 0 chr3 126201607 126201900 -101322678 + AluSp SINE Alu 1 297 -16 203 338 26 66 chr3 126201905 126201972 -101322606 - MIR3 SINE MIR -63 145 77 2270 115 35 35 chr3 126201972 126202347 -101322231 - THE1C LTR MaLR 0 375 1 203 338 26 66 chr3 126202347 126202430 -101322148 - MIR3 SINE MIR -131 77 1 1598 136 102 159 chr3 126202697 126203176 -101321402 - LTR47A LTR ERVL 0 452 1 538 191 15 7 chr3 126203414 126203550 -101321028 + CT-rich Low_complexity Low_complexity 1 137 0 1738 147 30 13 chr3 126203647 126203947 -101320631 - AluJo SINE Alu -5 307 3 271 289 193 9 chr3 126204347 126204461 -101320117 + MIR SINE MIR 20 154 -108 947 299 79 35 chr3 126204752 126205188 -101319390 - L2 LINE L2 -21 3292 2877 1969 170 3 0 chr3 126205188 126205499 -101319079 + AluJb SINE Alu 1 312 0 947 299 79 35 chr3 126205499 126205609 -101318969 - L2 LINE L2 -436 2877 1596 6823 63 8 4 chr3 126205677 126206507 -101318071 + L1PA8 LINE L1 5337 6170 -2 215 393 48 0 chr3 126206626 126206771 -101317807 - MIR SINE MIR -41 221 70 1765 120 0 0 chr3 126209933 126210167 -101314411 - AluSq SINE Alu -79 234 1 689 181 111 18 chr3 126210433 126210604 -101313974 + MER20 DNA MER1_type 3 189 -30 370 227 41 79 chr3 126210824 126210990 -101313588 - MIR3 SINE MIR -1 207 47 220 251 44 169 chr3 126213556 126213739 -101310839 - MIR3 SINE MIR -41 167 8 1985 123 16 13 chr3 126214040 126214350 -101310228 - AluSx SINE Alu -1 311 1 378 0 0 0 chr3 126214963 126215005 -101309573 + (TG)n Simple_repeat Simple_repeat 2 43 0 679 216 86 116 chr3 126215430 126215726 -101308852 - L1MC5 LINE L1 -49 7912 7609 1876 152 3 13 chr3 126215726 126216035 -101308543 - AluJb SINE Alu -6 306 1 679 216 86 116 chr3 126216035 126216054 -101308524 - L1MC5 LINE L1 -352 7609 7591 1548 167 0 67 chr3 126216054 126216354 -101308224 - AluJo SINE Alu -32 280 1 679 216 86 116 chr3 126216354 126216617 -101307961 - L1MC5 LINE L1 -370 7591 7350 195 129 0 0 chr3 126216656 126216687 -101307891 + (TA)n Simple_repeat Simple_repeat 1 31 0 234 150 0 0 chr3 126217490 126217530 -101307048 + (A)n Simple_repeat Simple_repeat 1 40 0 270 73 0 0 chr3 126217726 126217767 -101306811 + (TG)n Simple_repeat Simple_repeat 2 42 0 1721 152 22 35 chr3 126219399 126219715 -101304863 + AluJb SINE Alu 1 312 0 333 351 53 15 chr3 126222343 126222474 -101302104 + L2 LINE L2 3121 3256 -16 710 333 34 3 chr3 126222523 126222817 -101301761 - MLT1I LTR MaLR -104 305 3 1220 94 18 12 chr3 126223192 126223363 -101301215 - AluSp SINE Alu -21 292 121 13652 139 30 77 chr3 126223535 126223801 -101300777 - Tigger2 DNA MER2_type 0 2718 2441 14898 73 11 1 chr3 126223801 126226572 -101298006 - L1PA7 LINE L1 -2 6152 3359 13652 139 30 77 chr3 126226572 126229156 -101295422 - Tigger2 DNA MER2_type -277 2441 1 331 270 63 11 chr3 126229261 126229435 -101295143 - L1ME4a LINE L1 -234 5887 5705 292 261 83 33 chr3 126233421 126233568 -101291010 - LTR37B LTR ERV1 -83 385 226 1248 93 132 5 chr3 126233568 126233772 -101290806 - MER30 DNA MER1_type 0 230 1 292 261 83 33 chr3 126233772 126233804 -101290774 - LTR37B LTR ERV1 -242 226 197 250 239 14 14 chr3 126233937 126234008 -101290570 - LTR37B LTR ERV1 -333 135 65 407 270 43 82 chr3 126234573 126235010 -101289568 - MER31-int LTR ERV1 -1136 3800 3381 24 0 0 0 chr3 126235377 126235401 -101289177 + AT_rich Low_complexity Low_complexity 1 24 0 272 100 0 0 chr3 126236544 126236584 -101287994 - MER4E LTR ERV1 -73 706 667 1984 153 0 3 chr3 126236648 126236935 -101287643 + AluJb SINE Alu 1 286 -26 579 168 48 0 chr3 126237712 126237837 -101286741 - LTR37B LTR ERV1 0 468 338 21 0 0 0 chr3 126238065 126238086 -101286492 + AT_rich Low_complexity Low_complexity 1 21 0 3444 125 13 13 chr3 126238417 126238944 -101285634 + MER1A DNA MER1_type 1 527 0 298 321 9 18 chr3 126239575 126239684 -101284894 + L2 LINE L2 3163 3270 -2 25 0 0 0 chr3 126240588 126240613 -101283965 + AT_rich Low_complexity Low_complexity 1 25 0 253 175 93 62 chr3 126240930 126241027 -101283551 - Charlie5 DNA MER1_type -41 2571 2472 7105 33 4 1 chr3 126241106 126242036 -101282542 - L1PA2 LINE L1 0 6155 5254 300 158 0 0 chr3 126242156 126242213 -101282365 + (TG)n Simple_repeat Simple_repeat 2 58 0 2012 130 7 3 chr3 126242793 126243085 -101281493 + AluSx SINE Alu 1 293 -19 372 43 0 0 chr3 126243085 126243131 -101281447 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 1333 161 173 8 chr3 126243225 126243479 -101281099 - AluSg SINE Alu -3 297 2 2105 94 0 21 chr3 126243591 126243877 -101280701 - AluSx SINE Alu -30 282 3 1839 163 81 0 chr3 126244104 126244473 -101280105 - L1MD1 LINE L1 -5 6237 5839 908 181 98 5 chr3 126244474 126244689 -101279889 - L1MDa LINE L1 -6288 252 18 13133 127 22 68 chr3 126245053 126245392 -101279186 - Tigger1 DNA MER2_type 0 2418 2065 444 19 0 0 chr3 126245392 126245445 -101279133 + (TG)n Simple_repeat Simple_repeat 2 54 0 1822 134 0 11 chr3 126245445 126245720 -101278858 - AluSx SINE Alu -40 272 1 13133 127 22 68 chr3 126245720 126246507 -101278071 - Tigger1 DNA MER2_type -352 2066 1245 1100 108 18 6 chr3 126246507 126246674 -101277904 - L1PA10 LINE L1 -3 6165 5997 13133 127 22 68 chr3 126246674 126247044 -101277534 - Tigger1 DNA MER2_type -1173 1245 860 628 112 10 0 chr3 126247044 126247142 -101277436 - AluJ/FLAM SINE Alu -213 99 1 13133 127 22 68 chr3 126247142 126248077 -101276501 - Tigger1 DNA MER2_type -1558 860 1 659 143 118 0 chr3 126248140 126248259 -101276319 - FLAM_C SINE Alu 0 133 1 2137 117 7 3 chr3 126248315 126248614 -101275964 + AluY SINE Alu 1 300 -11 888 231 0 6 chr3 126249538 126249720 -101274858 + AluJb SINE Alu 130 310 -2 1860 153 3 3 chr3 126249876 126250171 -101274407 - AluJb SINE Alu -16 296 2 25 0 0 0 chr3 126250182 126250207 -101274371 + AT_rich Low_complexity Low_complexity 1 25 0 202 314 57 29 chr3 126251015 126251120 -101273458 - MIR SINE MIR -59 203 96 2247 126 0 3 chr3 126251229 126251538 -101273040 + AluSx SINE Alu 1 308 -4 185 334 74 67 chr3 126251773 126252072 -101272506 - L2 LINE L2 -1484 1830 1530 384 216 0 14 chr3 126252156 126252230 -101272348 - Tigger3(Golem) DNA MER2_type -1 3028 2956 495 245 86 20 chr3 126252309 126252460 -101272118 + MIR SINE MIR 97 257 -5 1993 130 10 20 chr3 126252580 126252900 -101271678 - AluSx SINE Alu 0 312 5 634 182 0 16 chr3 126252971 126253092 -101271486 - Tigger3(Golem) DNA MER2_type -2846 183 65 360 197 0 0 chr3 126253137 126253203 -101271375 - Tigger3(Golem) DNA MER2_type -2952 77 12 1887 146 12 6 chr3 126253216 126253539 -101271039 + MER7A DNA MER2_type 24 346 0 821 257 28 0 chr3 126253557 126253736 -101270842 - MIR SINE MIR -77 185 2 765 246 76 45 chr3 126254444 126254733 -101269845 - MER77 LTR ERV1 -4 601 304 1758 157 21 0 chr3 126254733 126255040 -101269538 - AluSq SINE Alu 0 313 1 1336 155 0 0 chr3 126255041 126255247 -101269331 - AluJb SINE Alu -8 304 99 233 223 155 29 chr3 126255403 126255506 -101269072 - MER77 LTR ERV1 -436 169 54 375 290 113 39 chr3 126255675 126255958 -101268620 - MLT1I LTR MaLR -69 340 37 188 301 77 77 chr3 126256250 126256433 -101268145 + L2 LINE L2 2835 3017 -255 1381 177 8 26 chr3 126256598 126256864 -101267714 + AluJo SINE Alu 40 300 -12 28 29 0 0 chr3 126257524 126257559 -101267019 + AT_rich Low_complexity Low_complexity 1 35 0 327 312 18 0 chr3 126257768 126257877 -101266701 - MER94 DNA DNA 0 134 24 22 0 0 0 chr3 126259749 126259771 -101264807 + AT_rich Low_complexity Low_complexity 1 22 0 785 204 20 13 chr3 126260070 126260222 -101264356 + FRAM SINE Alu 1 145 -31 414 269 141 73 chr3 126261330 126261877 -101262701 - L1MC4a LINE L1 -1911 5897 5314 2253 115 0 0 chr3 126262670 126262975 -101261603 - AluSx SINE Alu -3 309 5 233 300 22 22 chr3 126265966 126266056 -101258522 + MIR SINE MIR 53 142 -66 2522 50 3 0 chr3 126268858 126269155 -101255423 - AluY SINE Alu -13 298 1 24 53 0 0 chr3 126269321 126269359 -101255219 + AT_rich Low_complexity Low_complexity 1 38 0 195 329 7 49 chr3 126269917 126270060 -101254518 + L2 LINE L2 1220 1356 -1958 1170 308 169 40 chr3 126270127 126271640 -101252938 + L2 LINE L2 1521 3232 -40 2077 141 0 0 chr3 126272081 126272380 -101252198 - AluSx SINE Alu -11 301 3 642 274 0 26 chr3 126274067 126274226 -101250352 + MER46C DNA MER2_type 153 308 -30 450 196 9 9 chr3 126274226 126274333 -101250245 + L1MA10 LINE L1 6228 6334 0 642 274 0 26 chr3 126274333 126274363 -101250215 + MER46C DNA MER2_type 308 337 -1 777 171 0 0 chr3 126274498 126274615 -101249963 + FLAM_C SINE Alu 1 117 -16 273 57 0 0 chr3 126274618 126274653 -101249925 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 661 211 43 22 chr3 126274819 126275004 -101249574 + MER53 DNA DNA 1 189 0 386 266 98 21 chr3 126275635 126275778 -101248800 - MER5B DNA MER1_type 0 178 25 1698 186 3 17 chr3 126276233 126276524 -101248054 + AluJo SINE Alu 1 287 -25 2328 63 3 3 chr3 126277164 126277448 -101247130 - AluY SINE Alu -11 300 17 211 139 23 23 chr3 126278731 126278774 -101245804 + CT-rich Low_complexity Low_complexity 3 45 0 351 336 21 28 chr3 126282053 126282196 -101242382 - MIR3 SINE MIR -29 179 38 1378 111 0 10 chr3 126282453 126282651 -101241927 - AluY SINE Alu -10 301 106 345 219 0 73 chr3 126282745 126282803 -101241775 + MIR3 SINE MIR 91 143 -65 2993 90 15 44 chr3 126282803 126282858 -101241720 - MLT2A1 LTR ERVL 0 444 389 423 0 0 0 chr3 126282858 126282905 -101241673 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 2993 90 15 44 chr3 126282905 126283306 -101241272 - MLT2A1 LTR ERVL -55 389 1 345 219 0 73 chr3 126283306 126283329 -101241249 + MIR3 SINE MIR 143 166 -42 1658 147 31 53 chr3 126284848 126285167 -101239411 + AluJb SINE Alu 1 312 0 950 199 0 5 chr3 126285552 126285743 -101238835 - L1MC1 LINE L1 -5 6328 6139 21 0 0 0 chr3 126285826 126285847 -101238731 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr3 126286135 126286161 -101238417 + (TTTCC)n Simple_repeat Simple_repeat 4 29 0 2104 110 26 13 chr3 126286162 126286471 -101238107 - AluSq SINE Alu 0 313 1 1842 168 3 3 chr3 126288882 126289196 -101235382 + AluSx SINE Alu 1 314 0 21 0 0 0 chr3 126289451 126289472 -101235106 + AT_rich Low_complexity Low_complexity 1 21 0 470 198 9 0 chr3 126289596 126289702 -101234876 + L1ME2 LINE L1 4545 4651 -1495 2190 224 16 2 chr3 126289702 126290154 -101234424 - MER82 DNA MER2_type 0 653 196 31 58 0 0 chr3 126290155 126290207 -101234371 + AT_rich Low_complexity Low_complexity 1 52 0 1005 173 40 20 chr3 126290212 126290414 -101234164 - MER82 DNA MER2_type -447 206 1 1095 251 80 46 chr3 126290415 126290853 -101233725 + L1ME2 LINE L1 4651 5103 -1043 2565 221 81 59 chr3 126290858 126291727 -101232851 + L1ME2 LINE L1 5254 6141 -23 27 0 0 0 chr3 126291728 126291755 -101232823 + AT_rich Low_complexity Low_complexity 1 27 0 299 174 29 0 chr3 126291830 126291899 -101232679 + L1M4 LINE L1 4982 5052 -1094 2166 87 33 7 chr3 126292029 126292329 -101232249 - AluY SINE Alu -3 308 1 23 33 0 0 chr3 126292330 126292360 -101232218 + AT_rich Low_complexity Low_complexity 1 30 0 294 73 0 0 chr3 126292917 126292958 -101231620 + (TG)n Simple_repeat Simple_repeat 2 42 0 226 138 15 77 chr3 126293037 126293102 -101231476 + CT-rich Low_complexity Low_complexity 6 66 0 22 25 0 25 chr3 126293374 126293401 -101231177 + AT_rich Low_complexity Low_complexity 1 28 -11 2193 118 0 0 chr3 126293401 126293689 -101230889 - AluSx SINE Alu -24 288 1 22 25 0 25 chr3 126293689 126293701 -101230877 + AT_rich Low_complexity Low_complexity 28 39 0 998 303 38 40 chr3 126294051 126294550 -101230028 - L2 LINE L2 -510 2804 2307 233 226 0 19 chr3 126294799 126294852 -101229726 + CT-rich Low_complexity Low_complexity 3 54 0 261 98 0 0 chr3 126295613 126295654 -101228924 + (TG)n Simple_repeat Simple_repeat 1 41 0 467 224 49 71 chr3 126297675 126297858 -101226720 - MIR SINE MIR -13 249 71 25 0 0 0 chr3 126297892 126297917 -101226661 + AT_rich Low_complexity Low_complexity 1 25 0 835 250 52 14 chr3 126298570 126298782 -101225796 + MIR SINE MIR 42 261 -1 23 54 0 0 chr3 126298958 126298995 -101225583 + AT_rich Low_complexity Low_complexity 1 37 0 676 114 0 0 chr3 126299128 126299233 -101225345 - L1PB2 LINE L1 0 6151 6047 497 341 44 6 chr3 126300403 126300657 -101223921 - MIR SINE MIR 0 262 3 240 385 77 0 chr3 126302088 126302205 -101222373 - L2 LINE L2 -43 3229 3104 235 319 14 0 chr3 126302286 126302358 -101222220 - tRNA-Leu-CTA tRNA tRNA -5 80 8 331 217 23 16 chr3 126302398 126302527 -101222051 + (TA)n Simple_repeat Simple_repeat 2 131 0 1648 159 4 15 chr3 126302830 126303101 -101221477 - AluJb SINE Alu -27 285 18 1766 169 25 0 chr3 126303286 126303570 -101221008 + AluJo SINE Alu 2 292 -20 22 0 0 0 chr3 126305885 126305907 -101218671 + AT_rich Low_complexity Low_complexity 1 22 0 2373 96 0 0 chr3 126308417 126308719 -101215859 + AluSc SINE Alu 1 302 -7 2218 110 7 7 chr3 126310015 126310324 -101214254 + AluSq SINE Alu 3 311 -2 180 0 0 0 chr3 126311653 126311673 -101212905 + (CA)n Simple_repeat Simple_repeat 1 20 0 648 122 0 152 chr3 126311676 126311720 -101212858 + L1MA9 LINE L1 6167 6216 -96 1931 140 0 7 chr3 126311720 126311998 -101212580 - AluSx SINE Alu -25 287 12 648 122 0 152 chr3 126311998 126312117 -101212461 + L1MA9 LINE L1 6216 6305 -7 23 54 0 0 chr3 126312893 126312930 -101211648 + AT_rich Low_complexity Low_complexity 1 37 0 193 297 218 0 chr3 126312940 126313041 -101211537 - L2 LINE L2 -12 3260 3138 341 58 19 0 chr3 126313869 126313921 -101210657 + (TG)n Simple_repeat Simple_repeat 2 54 0 366 250 59 59 chr3 126314115 126314251 -101210327 + MIR3 SINE MIR 41 176 -32 214 49 24 24 chr3 126314323 126314364 -101210214 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 216 0 0 0 chr3 126315343 126315367 -101209211 + (A)n Simple_repeat Simple_repeat 1 24 0 199 244 70 113 chr3 126319214 126319329 -101205249 + L3 LINE CR1 614 723 -854 442 322 122 5 chr3 126319955 126320365 -101204213 - L1MC4a LINE L1 -1850 5958 5501 33 66 0 0 chr3 126320990 126321051 -101203527 + AT_rich Low_complexity Low_complexity 1 61 0 193 295 16 0 chr3 126321499 126321560 -101203018 - MIR SINE MIR 0 262 201 22 0 0 0 chr3 126322999 126323021 -101201557 + AT_rich Low_complexity Low_complexity 1 22 0 2191 108 0 0 chr3 126324387 126324673 -101199905 + AluSq SINE Alu 1 286 -27 315 282 182 48 chr3 126325202 126325614 -101198964 - L1MC/D LINE L1 -2025 5783 5317 245 248 76 19 chr3 126327694 126327799 -101196779 + L3 LINE CR1 792 902 -675 1901 148 9 28 chr3 126328392 126328710 -101195868 + AluJo SINE Alu 1 312 0 319 324 67 22 chr3 126329950 126330129 -101194449 + MIR3 SINE MIR 17 203 -5 188 322 17 103 chr3 126331732 126331906 -101192672 - L2 LINE L2 -246 3026 2868 331 346 123 41 chr3 126332270 126332637 -101191941 - L2 LINE L2 -33 3239 2843 1124 281 159 13 chr3 126332791 126333507 -101191071 - L2 LINE L2 -1 3312 2503 2285 71 0 0 chr3 126333797 126334103 -101190475 - AluY SINE Alu 0 306 1 245 189 7 101 chr3 126334131 126334279 -101190299 + T-rich Low_complexity Low_complexity 2 135 0 1940 171 55 6 chr3 126334841 126335169 -101189409 + MER2 DNA MER2_type 1 344 0 739 178 89 0 chr3 126335273 126335408 -101189170 + MER5A DNA MER1_type 1 147 -42 1729 174 7 0 chr3 126335984 126336259 -101188319 - AluJb SINE Alu -35 277 1 280 281 165 15 chr3 126337590 126337857 -101186721 + L1ME4a LINE L1 5762 6068 -53 28 48 0 0 chr3 126337888 126337930 -101186648 + AT_rich Low_complexity Low_complexity 1 42 0 26 0 0 0 chr3 126338400 126338426 -101186152 + AT_rich Low_complexity Low_complexity 1 26 0 28 61 0 0 chr3 126339578 126339627 -101184951 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr3 126339996 126340032 -101184546 + AT_rich Low_complexity Low_complexity 1 36 0 668 200 29 41 chr3 126340080 126340249 -101184329 - LTR37B LTR ERV1 -21 447 281 3081 182 20 11 chr3 126340249 126340799 -101183779 + MER68 LTR ERV1 1 555 -7 485 123 25 0 chr3 126340804 126340885 -101183693 - LTR37B LTR ERV1 -194 274 192 507 202 247 6 chr3 126341094 126341272 -101183306 + MIR SINE MIR 1 221 -41 637 288 121 33 chr3 126342608 126343028 -101181550 + L2 LINE L2 2039 2495 -819 1688 233 29 0 chr3 126343131 126343508 -101181070 + MER63B DNA MER1_type 20 407 -29 2138 120 0 3 chr3 126343912 126344211 -101180367 + AluSc SINE Alu 1 298 -11 216 278 93 0 chr3 126345140 126345194 -101179384 + L2 LINE L2 3214 3272 0 2187 105 0 0 chr3 126345525 126345810 -101178768 + AluSx SINE Alu 2 286 -26 23 0 0 0 chr3 126345821 126345844 -101178734 + AT_rich Low_complexity Low_complexity 1 23 0 508 323 89 17 chr3 126349589 126349824 -101174754 - MIR SINE MIR -4 258 7 185 116 0 47 chr3 126349905 126349948 -101174630 + (GGA)n Simple_repeat Simple_repeat 2 42 0 544 261 144 37 chr3 126351873 126352088 -101172490 + MIR SINE MIR 21 258 -4 695 273 107 9 chr3 126352436 126352652 -101171926 + MIR SINE MIR 20 256 -6 1729 82 0 13 chr3 126353059 126353292 -101171286 - AluY SINE Alu -1 310 81 1108 68 0 0 chr3 126353297 126353429 -101171149 - AluY SINE Alu -179 132 1 898 253 5 0 chr3 126353517 126353703 -101170875 - MER5A DNA MER1_type 0 189 3 2559 153 31 2 chr3 126354459 126354884 -101169694 - L1MC1 LINE L1 -9 6324 5888 238 275 0 14 chr3 126355402 126355471 -101169107 + MER5B DNA MER1_type 8 75 -103 858 199 24 0 chr3 126355699 126355865 -101168713 - AluJo SINE Alu -26 286 117 2432 172 41 10 chr3 126356197 126356610 -101167968 - MSTB LTR MaLR 0 426 1 300 351 61 12 chr3 126356902 126357067 -101167511 + MIR SINE MIR 2 174 -88 1510 106 0 0 chr3 126357244 126357443 -101167135 - AluY SINE Alu -7 304 106 363 242 0 63 chr3 126357537 126357595 -101166983 + MIR3 SINE MIR 91 142 -66 3250 88 15 44 chr3 126357595 126357650 -101166928 - MLT2A1 LTR ERVL 0 444 389 423 0 0 0 chr3 126357650 126357697 -101166881 + (TAGA)n Simple_repeat Simple_repeat 2 48 0 3250 88 15 44 chr3 126357697 126358098 -101166480 - MLT2A1 LTR ERVL -55 389 1 363 242 0 63 chr3 126358098 126358134 -101166444 + MIR3 SINE MIR 142 179 -29 22 70 0 0 chr3 126358727 126358770 -101165808 + AT_rich Low_complexity Low_complexity 1 43 0 210 217 0 0 chr3 126360245 126360291 -101164287 + CT-rich Low_complexity Low_complexity 4 49 0 621 100 0 0 chr3 126362440 126362530 -101162048 + (TCCC)n Simple_repeat Simple_repeat 3 92 0 604 225 23 16 chr3 126362553 126362682 -101161896 - MER94 DNA DNA -1 133 4 263 194 65 0 chr3 126362960 126363022 -101161556 + MER58 DNA MER1_type 2354 2419 -1 234 0 0 0 chr3 126364019 126364045 -101160533 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 258 184 79 40 chr3 126364157 126364233 -101160345 + L3b LINE CR1 1296 1374 -209 180 237 102 34 chr3 126364346 126364405 -101160173 - L2 LINE L2 -11 3302 3240 239 200 0 13 chr3 126364465 126364540 -101160038 + (TGGA)n Simple_repeat Simple_repeat 1 74 0 332 315 81 0 chr3 126367597 126367746 -101156832 - L1ME LINE L1 -323 5798 5638 2089 126 7 3 chr3 126368042 126368352 -101156226 - AluSp SINE Alu -2 311 1 1924 120 3 23 chr3 126368788 126369087 -101155491 - AluSg SINE Alu -17 293 1 1566 205 8 91 chr3 126369286 126369681 -101154897 - MLT1A1 LTR MaLR -3 362 1 629 251 123 23 chr3 126369684 126369903 -101154675 - MIR SINE MIR -13 249 9 213 269 104 15 chr3 126369910 126369977 -101154601 - L2 LINE L2 -31 3241 3169 290 254 0 0 chr3 126370248 126370303 -101154275 - MER96B DNA MER1_type? -1 416 362 222 261 0 0 chr3 126370457 126370503 -101154075 - L2 LINE L2 -11 3261 3216 2203 109 3 19 chr3 126370568 126370879 -101153699 + AluSq SINE Alu 1 306 -7 208 143 0 61 chr3 126371546 126371595 -101152983 + (CAAAAA)n Simple_repeat Simple_repeat 3 48 0 2518 151 43 24 chr3 126371677 126372095 -101152483 + MSTB LTR MaLR 1 426 0 8215 172 95 4 chr3 126372096 126373608 -101150970 + MSTB-int LTR MaLR 3 1651 0 2105 141 56 48 chr3 126373608 126373875 -101150703 + MSTB LTR MaLR 1 280 -152 2133 146 32 35 chr3 126373875 126374251 -101150327 + THE1C LTR MaLR 1 375 0 2105 141 56 48 chr3 126374251 126374379 -101150199 + MSTB LTR MaLR 280 406 -26 1877 134 4 0 chr3 126374395 126374670 -101149908 - AluSq SINE Alu -1 312 37 1393 207 165 32 chr3 126376026 126376073 -101148505 + LTR40c LTR ERVL 5 44 -421 1611 187 170 5 chr3 126376073 126376474 -101148104 + MLT1C LTR MaLR 1 467 0 1393 207 165 32 chr3 126376474 126376832 -101147746 + LTR40c LTR ERVL 44 464 -1 182 363 32 8 chr3 126376871 126376995 -101147583 - L2 LINE L2 -65 3248 3122 22 35 0 0 chr3 126377239 126377268 -101147310 + AT_rich Low_complexity Low_complexity 1 29 0 2353 61 0 42 chr3 126377727 126378037 -101146541 + AluY SINE Alu 1 297 -14 302 239 101 9 chr3 126378966 126379075 -101145503 - L1MC4 LINE L1 -1 8041 7923 28 29 0 0 chr3 126379187 126379222 -101145356 + AT_rich Low_complexity Low_complexity 1 35 0 29 0 0 0 chr3 126379611 126379640 -101144938 + AT_rich Low_complexity Low_complexity 1 29 0 1253 176 21 13 chr3 126381369 126381602 -101142976 - AluJo SINE Alu -77 235 1 1787 239 57 45 chr3 126382100 126382577 -101142001 - MER97b DNA MER1_type? -30 864 352 2936 101 27 25 chr3 126382577 126383024 -101141554 + MER83 LTR ERV1 1 448 0 1787 239 57 45 chr3 126383024 126383327 -101141251 - MER97b DNA MER1_type? -542 352 54 950 211 82 11 chr3 126383381 126383660 -101140918 - MER31B LTR ERV1 -21 445 147 308 167 0 0 chr3 126383682 126383736 -101140842 + A-rich Low_complexity Low_complexity 1 54 0 681 131 197 0 chr3 126383749 126383886 -101140692 - MER31B LTR ERV1 -302 164 1 260 57 0 0 chr3 126386248 126386283 -101138295 - MER11B LTR ERVK -894 342 308 2064 130 10 0 chr3 126386507 126386800 -101137778 + AluSq SINE Alu 1 296 -17 5369 148 29 46 chr3 126386966 126388055 -101136523 + MER11C LTR ERVK 1 1071 0 1913 147 0 35 chr3 126388691 126389003 -101135575 - AluJo SINE Alu -11 301 1 322 247 11 22 chr3 126389475 126389564 -101135014 + MER21B LTR ERV1 3 90 -773 283 289 247 0 chr3 126389606 126389703 -101134875 + MER21B LTR ERV1 19 139 -724 1521 223 99 48 chr3 126389747 126390304 -101134274 + MER21B LTR ERV1 231 815 -48 246 299 137 17 chr3 126390658 126390775 -101133803 - L2 LINE L2 -3 3269 3139 199 283 19 0 chr3 126391586 126391639 -101132939 - L2 LINE L2 -5 3267 3214 246 156 0 0 chr3 126391648 126391693 -101132885 + CT-rich Low_complexity Low_complexity 2 46 0 184 284 184 64 chr3 126391721 126391830 -101132748 - L2 LINE L2 -14 3258 3137 345 250 0 25 chr3 126392497 126392577 -101132001 + MIR3 SINE MIR 110 187 -21 389 288 98 14 chr3 126392928 126393143 -101131435 - L1ME LINE L1 -351 5770 5538 1156 177 238 3 chr3 126393321 126393603 -101130975 - MER7A DNA MER2_type 0 346 1 314 175 21 72 chr3 126394996 126395093 -101129485 - MER103 DNA DNA -54 112 21 466 206 206 53 chr3 126395154 126395343 -101129235 + MIR SINE MIR 18 235 -27 2325 104 0 0 chr3 126395370 126395667 -101128911 - AluSx SINE Alu -15 297 1 216 266 43 0 chr3 126396676 126396770 -101127808 + (TA)n Simple_repeat Simple_repeat 1 98 0 565 198 6 62 chr3 126396925 126397087 -101127491 - L1MC5 LINE L1 -52 7909 7757 1326 283 86 24 chr3 126397312 126397846 -101126732 - MLT1K LTR MaLR -1 587 21 250 163 0 0 chr3 126398566 126398615 -101125963 - L1ME4a LINE L1 0 6121 6073 229 179 18 18 chr3 126399049 126399105 -101125473 - MIR SINE MIR -66 196 141 2474 147 30 59 chr3 126399106 126399655 -101124923 + MER51C LTR ERV1 1 640 0 836 253 80 13 chr3 126400317 126400618 -101123960 - LTR50 LTR ERVL -10 785 465 252 0 0 0 chr3 126400748 126400776 -101123802 + (A)n Simple_repeat Simple_repeat 1 28 0 21 71 0 0 chr3 126401115 126401157 -101123421 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr3 126401348 126401370 -101123208 + AT_rich Low_complexity Low_complexity 1 22 0 1273 172 103 31 chr3 126401383 126401703 -101122875 - MER2 DNA MER2_type 0 344 2 1100 18 53 6 chr3 126401753 126401922 -101122656 + (TCTA)n Simple_repeat Simple_repeat 2 178 0 1192 210 20 114 chr3 126402144 126402592 -101121986 - L2 LINE L2 -3 3310 2905 21 57 0 0 chr3 126402691 126402726 -101121852 + AT_rich Low_complexity Low_complexity 1 35 0 213 179 36 36 chr3 126402832 126402888 -101121690 + GA-rich Low_complexity Low_complexity 5 60 0 387 254 109 29 chr3 126403653 126403791 -101120787 - L2 LINE L2 -5 3308 3160 205 342 58 25 chr3 126403857 126404006 -101120572 - MIR SINE MIR -65 143 42 2501 51 3 3 chr3 126404957 126405289 -101119289 - AluY SINE Alu 0 332 1 335 243 139 14 chr3 126405476 126405620 -101118958 + MIR SINE MIR 51 212 -50 261 0 0 0 chr3 126405704 126405733 -101118845 + (CA)n Simple_repeat Simple_repeat 2 30 0 918 114 8 0 chr3 126406162 126406285 -101118293 + AluJb SINE Alu 1 124 -188 195 42 0 0 chr3 126406747 126406771 -101117807 + (CA)n Simple_repeat Simple_repeat 1 24 0 235 294 24 24 chr3 126406814 126406899 -101117679 + L3b LINE CR1 1221 1305 -278 475 270 7 8 chr3 126407473 126407613 -101116965 - MIR SINE MIR -68 140 9 2145 140 0 6 chr3 126407963 126408277 -101116301 - AluSx SINE Alu 0 312 1 436 276 76 0 chr3 126408598 126408703 -101115875 + MIR SINE MIR 34 146 -62 368 302 28 9 chr3 126409463 126409569 -101115009 + MIR SINE MIR 29 136 -126 7957 73 4 19 chr3 126410185 126411273 -101113305 - MER11C LTR ERVK 0 1071 1 204 260 96 0 chr3 126411818 126411891 -101112687 - MIR SINE MIR -103 159 80 43 88 0 0 chr3 126412307 126412420 -101112158 + AT_rich Low_complexity Low_complexity 1 113 0 433 194 31 93 chr3 126413979 126414108 -101110470 - MLT1H LTR MaLR -8 541 421 538 263 49 19 chr3 126414152 126414357 -101110221 - MLT1H LTR MaLR -240 309 99 1621 199 0 43 chr3 126414598 126414924 -101109654 - AluJb SINE Alu 0 312 1 23 0 0 0 chr3 126415263 126415286 -101109292 + AT_rich Low_complexity Low_complexity 1 23 0 1685 175 7 10 chr3 126415301 126415598 -101108980 - AluJo SINE Alu -11 301 6 234 270 149 0 chr3 126416208 126416282 -101108296 - L2 LINE L2 -4 3268 3184 599 212 0 34 chr3 126416849 126416967 -101107611 - MER81 DNA DNA 0 114 1 231 125 0 0 chr3 126416979 126417019 -101107559 + (TG)n Simple_repeat Simple_repeat 1 40 0 25 31 0 0 chr3 126417037 126417069 -101107509 + AT_rich Low_complexity Low_complexity 1 32 0 34512 81 3 10 chr3 126417090 126421045 -101103533 - L1PA6 LINE L1 -2 6152 2248 836 57 0 0 chr3 126421045 126421150 -101103428 - L1PA5 LINE L1 -8 6146 6042 34512 81 3 10 chr3 126421150 126423040 -101101538 - L1PA6 LINE L1 -3906 2248 347 4029 46 0 13 chr3 126423039 126423349 -101101229 - L1PA5 LINE L1 -364 5790 5494 * 2240 96 0 35 chr3 126423349 126423662 -101100916 - AluSx SINE Alu -10 302 1 4029 46 0 13 chr3 126423662 126423979 -101100599 - L1PA5 LINE L1 -660 5494 5174 520 242 82 31 chr3 126428734 126428928 -101095650 + MIR SINE MIR 3 206 -56 1495 118 50 9 chr3 126429684 126429905 -101094673 - MER30 DNA MER1_type 0 230 1 614 196 159 32 chr3 126429988 126430177 -101094401 - MIR SINE MIR 0 262 50 259 221 234 0 chr3 126430705 126430782 -101093796 + MIR SINE MIR 160 254 -8 423 173 0 0 chr3 126430787 126430868 -101093710 + (CTA)n Simple_repeat Simple_repeat 2 82 0 2216 70 3 24 chr3 126431410 126431739 -101092839 + AluY SINE Alu 1 323 0 21 0 0 0 chr3 126432006 126432027 -101092551 + AT_rich Low_complexity Low_complexity 1 21 0 32 67 0 0 chr3 126434038 126434098 -101090480 + AT_rich Low_complexity Low_complexity 1 60 0 248 293 147 9 chr3 126434651 126434767 -101089811 - MIR SINE MIR -120 142 11 542 139 12 0 chr3 126435221 126435307 -101089271 + LTR33 LTR ERVL 340 426 -95 297 0 0 0 chr3 126435608 126435641 -101088937 + (TG)n Simple_repeat Simple_repeat 2 34 0 290 87 22 0 chr3 126435792 126435838 -101088740 + (TG)n Simple_repeat Simple_repeat 2 48 0 579 289 60 8 chr3 126435860 126436109 -101088469 - MIR SINE MIR 0 262 1 215 259 130 19 chr3 126436119 126436227 -101088351 + L2 LINE L2 3153 3272 0 257 0 30 0 chr3 126438920 126438953 -101085625 + (TCTA)n Simple_repeat Simple_repeat 3 36 0 25 31 0 0 chr3 126438956 126438988 -101085590 + AT_rich Low_complexity Low_complexity 1 32 0 276 303 82 16 chr3 126439332 126439454 -101085124 - MARNA DNA Mariner -335 251 122 2429 75 3 13 chr3 126439502 126439809 -101084769 + AluSp SINE Alu 1 304 -9 206 182 45 0 chr3 126440458 126440502 -101084076 - MER5B DNA MER1_type -132 46 1 1020 172 16 5 chr3 126440546 126440732 -101083846 - AluJo SINE Alu -4 308 121 246 269 28 19 chr3 126441783 126441891 -101082687 - MER5B DNA MER1_type -68 110 2 2656 52 0 0 chr3 126441977 126442286 -101082292 + AluY SINE Alu 1 309 -2 296 323 52 7 chr3 126442436 126442591 -101081987 - MIR SINE MIR -54 208 47 2088 153 0 0 chr3 126444248 126444549 -101080029 - AluSx SINE Alu -11 301 1 367 262 131 22 chr3 126444731 126444914 -101079664 - L1ME4a LINE L1 -119 6002 5800 2319 191 23 2 chr3 126446428 126446869 -101077709 - LTR47A LTR ERVL 0 452 3 656 216 58 12 chr3 126446971 126447142 -101077436 - MER97b DNA MER1_type? -874 179 1 897 79 87 0 chr3 126448140 126448266 -101076312 - MER85 DNA T2_type -2 137 1 2145 166 5 27 chr3 126448857 126449160 -101075418 - MLT1A1 LTR MaLR 0 365 70 1867 136 163 19 chr3 126449160 126449534 -101075044 + MSTA LTR MaLR 1 428 0 2145 166 5 27 chr3 126449534 126449603 -101074975 - MLT1A1 LTR MaLR -295 70 1 305 265 78 29 chr3 126449656 126449758 -101074820 + MIR SINE MIR 45 151 -57 369 316 61 15 chr3 126449781 126449977 -101074601 + MIR SINE MIR 58 262 0 265 324 29 0 chr3 126450196 126450301 -101074277 - MIR SINE MIR -147 115 8 296 244 141 0 chr3 126450948 126451104 -101073474 + L1ME LINE L1 5690 5867 -254 2589 193 90 0 chr3 126451385 126451897 -101072681 - MER68 LTR ERV1 -4 558 1 191 232 60 0 chr3 126452567 126452624 -101071954 + MIR SINE MIR 91 143 -65 1695 94 11 34 chr3 126453374 126453641 -101070937 + L1PA13 LINE L1 5899 6159 -4 219 279 183 39 chr3 126453744 126453848 -101070730 - L2 LINE L2 -3 3269 3151 295 291 132 27 chr3 126454249 126454469 -101070109 - L2 LINE L2 -675 2639 2397 32 57 0 0 chr3 126454846 126454899 -101069679 + AT_rich Low_complexity Low_complexity 1 53 0 1261 106 56 0 chr3 126454899 126455097 -101069481 - L1PB1 LINE L1 -1 6150 5942 652 202 202 5 chr3 126455743 126455794 -101068784 - MER21B LTR ERV1 -15 848 808 288 0 0 0 chr3 126455794 126455826 -101068752 + (TG)n Simple_repeat Simple_repeat 2 33 0 652 202 202 5 chr3 126455826 126455962 -101068616 - MER21B LTR ERV1 -55 808 624 1009 82 15 0 chr3 126455962 126456097 -101068481 + AluY SINE Alu 165 301 -10 1828 219 105 78 chr3 126456107 126456514 -101068064 - MER21B LTR ERV1 -241 622 193 627 217 8 0 chr3 126456514 126456643 -101067935 - FLAM_A SINE Alu 0 133 4 1828 219 105 78 chr3 126456643 126456823 -101067755 - MER21B LTR ERV1 -670 193 19 399 202 11 64 chr3 126456846 126456940 -101067638 - MER21B LTR ERV1 -774 89 1 272 226 0 32 chr3 126457397 126457459 -101067119 - L2 LINE L2 -9 3263 3204 226 222 0 0 chr3 126457464 126457509 -101067069 + GA-rich Low_complexity Low_complexity 3 47 0 202 303 28 76 chr3 126457882 126458027 -101066551 + MIR SINE MIR 49 186 -76 783 288 97 25 chr3 126458341 126459007 -101065571 + L1ME2 LINE L1 5214 5929 -235 450 252 54 29 chr3 126459987 126460125 -101064453 - MIR3 SINE MIR -5 203 61 2322 106 3 0 chr3 126460302 126460613 -101063965 + AluSx SINE Alu 1 312 0 21 0 0 0 chr3 126460808 126460829 -101063749 + AT_rich Low_complexity Low_complexity 1 21 0 1965 134 24 0 chr3 126461183 126461473 -101063105 + AluSc SINE Alu 1 297 -12 217 119 0 24 chr3 126464263 126464305 -101060273 + L2 LINE L2 3272 3312 -1 21 0 0 0 chr3 126464656 126464677 -101059901 + AT_rich Low_complexity Low_complexity 1 21 0 2446 88 0 0 chr3 126464677 126464974 -101059604 + AluSq SINE Alu 1 297 -16 231 262 66 0 chr3 126465277 126465338 -101059240 - L2 LINE L2 -56 3257 3193 21 36 0 0 chr3 126466085 126466113 -101058465 + AT_rich Low_complexity Low_complexity 1 28 0 391 129 43 14 chr3 126467191 126467295 -101057283 - FRAM SINE Alu 0 182 77 2167 85 30 0 chr3 126469358 126469628 -101054950 + AluSq SINE Alu 3 280 -33 252 0 0 0 chr3 126469628 126469656 -101054922 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 242 345 11 0 chr3 126470081 126470168 -101054410 - MIR SINE MIR -56 152 65 248 114 0 45 chr3 126472152 126472196 -101052382 + tRNA-Thr-ACT tRNA tRNA 1 42 -35 941 196 46 23 chr3 126472466 126472685 -101051893 - MER58A DNA MER1_type 0 224 1 266 305 162 36 chr3 126472896 126473063 -101051515 + MIR3 SINE MIR 20 207 -1 207 250 42 0 chr3 126473693 126473741 -101050837 - MIR3 SINE MIR -50 158 109 848 186 0 0 chr3 126474276 126474421 -101050157 + MSTB LTR MaLR 1 145 -281 694 102 10 0 chr3 126474419 126474517 -101050061 + MSTB LTR MaLR 334 432 0 * 2301 106 3 0 chr3 126474582 126474883 -101049695 + AluSq SINE Alu 1 302 -11 633 265 51 43 chr3 126475023 126475276 -101049302 + MIR SINE MIR 2 256 -6 265 298 48 0 chr3 126475854 126475938 -101048640 - L2 LINE L2 -49 3223 3136 190 265 69 39 chr3 126476590 126476692 -101047886 + L2 LINE L2 1917 2021 -1293 347 303 41 78 chr3 126476700 126476918 -101047660 + L2 LINE L2 2599 2808 -506 415 193 52 82 chr3 126477793 126477928 -101046650 - MER94 DNA DNA -1 133 3 499 345 0 48 chr3 126478735 126478900 -101045678 + L2 LINE L2 3116 3272 0 566 304 76 18 chr3 126481328 126481552 -101043026 - MIR SINE MIR -6 256 20 21 0 0 0 chr3 126481729 126481750 -101042828 + AT_rich Low_complexity Low_complexity 1 21 0 787 154 8 0 chr3 126481753 126481876 -101042702 - FLAM_A SINE Alu -8 125 2 24 53 0 0 chr3 126482196 126482234 -101042344 + AT_rich Low_complexity Low_complexity 1 38 0 242 393 45 0 chr3 126482235 126482347 -101042231 - L2 LINE L2 -18 3254 3138 283 266 221 18 chr3 126482729 126482842 -101041736 - MIR SINE MIR -18 244 109 1161 186 69 15 chr3 126483801 126484075 -101040503 + L1ME1 LINE L1 5283 5571 -595 1425 229 140 63 chr3 126484079 126484817 -101039761 + LTR1B LTR ERV1 1 826 0 1953 235 69 21 chr3 126484819 126485385 -101039193 + L1ME1 LINE L1 5574 6166 0 366 270 130 0 chr3 126485477 126485577 -101039001 - L2 LINE L2 -1 3271 3159 1886 181 74 2 chr3 126486299 126486692 -101037886 + MER67C LTR ERV1 290 710 0 415 340 82 19 chr3 126487997 126488203 -101036375 - MIR SINE MIR 0 262 44 192 40 0 0 chr3 126488474 126488499 -101036079 + (CCCTAG)n Simple_repeat Simple_repeat 3 27 0 21 0 0 0 chr3 126489269 126489290 -101035288 + AT_rich Low_complexity Low_complexity 1 21 0 473 314 17 29 chr3 126489698 126489873 -101034705 + MIR SINE MIR 77 249 -13 520 143 0 0 chr3 126490608 126490692 -101033886 - AluY SINE Alu -12 299 216 331 296 212 17 chr3 126490757 126490936 -101033642 + MIR SINE MIR 47 260 -2 211 298 0 0 chr3 126490953 126491000 -101033578 - L2 LINE L2 -36 3236 3190 21 36 0 0 chr3 126491298 126491326 -101033252 + AT_rich Low_complexity Low_complexity 1 28 0 423 244 178 30 chr3 126492191 126492388 -101032190 - L1ME LINE L1 -303 5818 5593 5566 132 13 22 chr3 126492979 126494412 -101030166 - L1PA16 LINE L1 -3 6866 5440 2038 98 56 7 chr3 126494423 126494709 -101029869 - AluSg SINE Alu -10 300 1 7739 15 0 0 chr3 126494824 126496137 -101028441 - L1PA3 LINE L1 -19 6136 4824 2054 108 0 0 chr3 126496237 126496506 -101028072 - AluSg SINE Alu -41 269 1 278 91 45 0 chr3 126497379 126497423 -101027155 - LTR5 LTR ERVK 0 969 924 5727 181 26 4 chr3 126497524 126498468 -101026110 - L1PA15-16 LINE L1 -5870 979 15 476 89 13 0 chr3 126498568 126498647 -101025931 + (TA)n Simple_repeat Simple_repeat 2 81 0 12062 202 32 18 chr3 126498747 126499919 -101024659 - L1PA16 LINE L1 -1607 5242 4088 2059 148 73 14 chr3 126499919 126500263 -101024315 + THE1B LTR MaLR 1 364 0 12062 202 32 18 chr3 126500263 126503506 -101021072 - L1PA16 LINE L1 -2761 4088 790 1160 188 96 7 chr3 126503606 126503877 -101020701 + L1M4 LINE L1 4024 4318 -1828 315 0 0 0 chr3 126503960 126503995 -101020583 + (TG)n Simple_repeat Simple_repeat 2 36 0 374 314 87 32 chr3 126504008 126504260 -101020318 + L1ME LINE L1 5137 5402 -744 401 238 248 10 chr3 126504389 126504464 -101020114 + L1ME LINE L1 5502 5558 -563 11509 50 8 1 chr3 126504464 126506689 -101017889 + L1PA6 LINE L1 3928 6154 0 401 238 248 10 chr3 126506689 126506876 -101017702 + L1ME LINE L1 5558 5794 -327 209 287 28 0 chr3 126506877 126506985 -101017593 + (TA)n Simple_repeat Simple_repeat 1 111 0 22 56 0 0 chr3 126507275 126507311 -101017267 + AT_rich Low_complexity Low_complexity 1 36 0 819 246 16 11 chr3 126507660 126507851 -101016727 - MIR SINE MIR -66 196 5 1152 266 63 18 chr3 126508018 126508525 -101016053 - L1M4 LINE L1 -1197 4949 4420 831 270 140 22 chr3 126508523 126508930 -101015648 + L1M4 LINE L1 4948 5402 -744 * 2334 189 30 9 chr3 126509881 126510340 -101014238 - L1M4 LINE L1 -2090 4056 3588 341 309 42 12 chr3 126510368 126510627 -101013951 - L1M4 LINE L1 -1156 4990 4724 2165 154 30 37 chr3 126510662 126511124 -101013454 - L1MB3 LINE L1 0 6419 5961 9355 224 31 13 chr3 126511129 126513129 -101011449 - L1M2c LINE L1 -4684 2101 7 2463 188 41 21 chr3 126513143 126513948 -101010630 - L1MB3 LINE L1 -446 5973 5160 11219 146 65 30 chr3 126513960 126516215 -101008363 - L1MB3 LINE L1 -3921 2463 131 255 178 0 0 chr3 126516318 126516363 -101008215 - L1MB3 LINE L1 -6321 63 19 630 301 9 33 chr3 126516520 126516733 -101007845 + MER58A DNA MER1_type 1 208 -16 22 35 0 0 chr3 126516855 126516884 -101007694 + AT_rich Low_complexity Low_complexity 1 29 0 453 317 65 30 chr3 126516895 126517292 -101007286 - L1M4 LINE L1 -1824 4322 3912 283 338 57 0 chr3 126517354 126517511 -101007067 - L1M4 LINE L1 -2357 3789 3624 371 348 0 9 chr3 126520266 126520381 -101004197 + MIR3 SINE MIR 47 160 -48 222 298 0 0 chr3 126521650 126521707 -101002871 + L2 LINE L2 2999 3055 -217 188 304 87 0 chr3 126522305 126522374 -101002204 + L3 LINE CR1 1424 1498 -79 26 0 0 0 chr3 126523405 126523431 -101001147 + AT_rich Low_complexity Low_complexity 1 26 0 23 0 0 0 chr3 126523520 126523543 -101001035 + AT_rich Low_complexity Low_complexity 1 23 0 10993 28 7 1 chr3 126523630 126525681 -100998897 + L1PA6 LINE L1 4088 6143 -11 374 329 139 15 chr3 126525907 126526181 -100998397 - L2 LINE L2 -830 2484 2177 2008 224 40 11 chr3 126528221 126528789 -100995789 + L1MB5 LINE L1 4156 4740 -1406 * 2350 174 107 60 chr3 126528783 126529379 -100995199 + L1MB5 LINE L1 5551 6174 0 30 0 0 0 chr3 126529578 126529608 -100994970 + AT_rich Low_complexity Low_complexity 1 30 0 41591 64 3 0 chr3 126529932 126536063 -100988515 + L1PA5 LINE L1 1 6150 -4 222 346 137 0 chr3 126536550 126536703 -100987875 + MIR SINE MIR 35 208 -54 190 264 165 58 chr3 126537263 126537384 -100987194 - L2 LINE L2 0 3272 3139 734 304 55 0 chr3 126537617 126537818 -100986760 + MIR SINE MIR 37 248 -14 2237 118 0 7 chr3 126538274 126538580 -100985998 - AluSx SINE Alu -8 304 1 571 294 0 11 chr3 126538751 126538935 -100985643 - MER115 DNA AcHobo -10 683 502 562 303 62 22 chr3 126539059 126539237 -100985341 - MER115 DNA AcHobo -378 315 131 273 301 39 0 chr3 126539232 126539335 -100985243 + LTR16A LTR ERVL 287 393 -57 * 249 347 16 24 chr3 126539547 126539671 -100984907 - L2 LINE L2 -279 2993 2871 352 226 88 44 chr3 126540190 126540327 -100984251 - MER103 DNA DNA -11 155 13 30 27 0 0 chr3 126540388 126540425 -100984153 + AT_rich Low_complexity Low_complexity 1 37 0 200 326 87 0 chr3 126540475 126540567 -100984011 - L2 LINE L2 -5 3308 3209 211 358 101 34 chr3 126541237 126541385 -100983193 - MIR3 SINE MIR -9 199 42 25 31 0 0 chr3 126541531 126541563 -100983015 + AT_rich Low_complexity Low_complexity 1 32 0 4572 169 17 42 chr3 126541893 126542835 -100981743 - LTR5 LTR ERVK -51 918 1 647 297 96 0 chr3 126543463 126543672 -100980906 - MIR SINE MIR -32 230 2 266 320 46 122 chr3 126545175 126545635 -100978943 - L2 LINE L2 -41 3231 2807 14928 179 18 27 chr3 126545710 126550041 -100974537 - L1MA4 LINE L1 -7 6475 2189 294 36 73 0 chr3 126550046 126550101 -100974477 + (TTTA)n Simple_repeat Simple_repeat 1 59 0 42456 36 22 1 chr3 126550106 126556122 -100968456 - L1PA3 LINE L1 0 6155 8 3692 247 92 28 chr3 126556137 126557620 -100966958 - L1MA4 LINE L1 -4078 1250 539 574 328 92 55 chr3 126558044 126558786 -100965792 - L1M3a LINE L1 -5173 782 14 1430 97 0 10 chr3 126558961 126559167 -100965411 - L1PA14 LINE L1 0 6161 5958 241 262 124 33 chr3 126559207 126559417 -100965161 - L1ME LINE L1 -302 5819 5591 42526 51 2 0 chr3 126559609 126565722 -100958856 - L1PA4 LINE L1 0 6155 34 367 161 161 0 chr3 126565767 126565848 -100958730 - THE1C LTR MaLR -83 292 199 38 75 0 0 chr3 126565998 126566078 -100958500 + AT_rich Low_complexity Low_complexity 1 80 0 300 317 20 0 chr3 126566183 126566284 -100958294 - L1ME LINE L1 -1311 4835 4733 449 232 0 0 chr3 126567107 126567189 -100957389 + FLAM_A SINE Alu 40 121 -21 255 216 11 34 chr3 126567477 126567565 -100957013 + GA-rich Low_complexity Low_complexity 2 87 0 280 350 40 0 chr3 126567632 126567732 -100956846 - L2 LINE L2 0 3272 3169 6718 184 67 35 chr3 126568031 126570316 -100954262 + L1MA5 LINE L1 1420 3631 -3279 2011 142 0 0 chr3 126570316 126570598 -100953980 + AluSx SINE Alu 1 282 -30 6718 184 67 35 chr3 126570598 126572730 -100951848 + L1MA5 LINE L1 3631 6167 -743 3498 134 12 7 chr3 126572750 126573347 -100951231 + L1MA5 LINE L1 6397 6996 -6 378 0 0 0 chr3 126575322 126575364 -100949214 + (CA)n Simple_repeat Simple_repeat 2 43 0 2076 162 29 5 chr3 126576487 126576906 -100947672 - L1 LINE L1 -1249 4897 4469 1430 213 0 70 chr3 126576895 126577309 -100947269 + L1 LINE L1 4903 5287 -859 * 1242 120 15 0 chr3 126577303 126577554 -100947024 - L1M2 LINE L1 -743 5403 5219 * 3047 263 53 31 chr3 126577694 126577926 -100946652 - L1ME LINE L1 -438 5795 5569 2086 106 0 7 chr3 126577926 126578208 -100946370 + AluSx SINE Alu 1 280 -32 240 35 0 0 chr3 126578211 126578240 -100946338 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 3047 263 53 31 chr3 126578240 126580189 -100944389 - L1ME LINE L1 -665 5568 3570 5801 117 0 0 chr3 126580267 126581232 -100943346 - L1PA15 LINE L1 -7 6158 5203 4291 237 36 13 chr3 126581573 126582877 -100941701 - L1PA12 LINE L1 -5637 1944 594 2644 136 47 0 chr3 126582984 126583412 -100941166 - L1PA12 LINE L1 -7132 449 2 411 298 80 55 chr3 126583423 126583712 -100940866 - L1ME LINE L1 -5450 946 651 2156 136 0 0 chr3 126583964 126584265 -100940313 - AluSx SINE Alu -11 301 1 281 379 35 0 chr3 126584420 126584594 -100939984 - L1ME LINE L1 -6045 351 172 412 86 0 29 chr3 126584601 126584671 -100939907 + L1PA13 LINE L1 6092 6159 -4 28 48 0 0 chr3 126584671 126584713 -100939865 + AT_rich Low_complexity Low_complexity 1 42 0 37 52 0 0 chr3 126584843 126584901 -100939677 + AT_rich Low_complexity Low_complexity 1 58 0 1497 178 56 31 chr3 126585096 126585383 -100939195 - AluJo SINE Alu -15 297 4 540 211 57 176 chr3 126585406 126585950 -100938628 - L1MC5 LINE L1 -492 7469 6991 27 49 0 0 chr3 126586779 126586820 -100937758 + AT_rich Low_complexity Low_complexity 1 41 0 2129 109 0 3 chr3 126587198 126587509 -100937069 + AluSq SINE Alu 1 310 0 1732 123 0 70 chr3 126587707 126587991 -100936587 - AluSq SINE Alu -49 264 1 307 308 0 22 chr3 126588415 126588506 -100936072 - L2 LINE L2 0 3272 3184 833 123 0 27 chr3 126589362 126589508 -100935070 - L1PA15 LINE L1 -1 6164 6023 1916 247 91 25 chr3 126589556 126590285 -100934293 - L1ME3A LINE L1 -9 6161 5385 2275 101 7 0 chr3 126591284 126591582 -100932996 + AluSx SINE Alu 1 300 -12 465 97 70 18 chr3 126592315 126592429 -100932149 + CT-rich Low_complexity Low_complexity 1 120 0 772 197 67 11 chr3 126592997 126593175 -100931403 + MER5A DNA MER1_type 2 189 0 435 255 32 30 chr3 126593241 126593378 -100931200 - MIR SINE MIR -68 140 1 315 242 79 91 chr3 126593452 126593617 -100930961 + MER5B DNA MER1_type 2 164 -14 249 33 0 0 chr3 126594243 126594273 -100930305 + (CA)n Simple_repeat Simple_repeat 1 30 0 185 0 40 0 chr3 126594272 126594297 -100930281 + (TA)n Simple_repeat Simple_repeat 2 27 0 * 1685 188 11 3 chr3 126594297 126594584 -100929994 - AluJb SINE Alu -17 295 7 25 83 0 0 chr3 126594635 126594695 -100929883 + AT_rich Low_complexity Low_complexity 1 60 0 40086 58 6 0 chr3 126594707 126600820 -100923758 - L1PA5 LINE L1 -2 6152 12 385 297 54 27 chr3 126601433 126601581 -100922997 - MIR SINE MIR 0 262 111 1203 202 117 39 chr3 126601582 126601943 -100922635 + MLT2B1 LTR ERVL 1 347 -69 1749 95 32 7 chr3 126602063 126602348 -100922230 + L1MA1 LINE L1 5857 6148 -154 21 23 0 47 chr3 126602349 126602377 -100922201 + AT_rich Low_complexity Low_complexity 1 28 -13 1133 113 11 6 chr3 126602377 126602554 -100922024 + L1MA1 LINE L1 6121 6298 -4 21 23 0 47 chr3 126602554 126602568 -100922010 + AT_rich Low_complexity Low_complexity 28 41 0 4815 158 36 36 chr3 126602574 126603507 -100921071 + L1PA16 LINE L1 4389 5341 -825 3537 96 29 6 chr3 126603507 126604057 -100920521 + L1MA3 LINE L1 5742 6304 -1 4815 158 36 36 chr3 126604057 126604878 -100919700 + L1PA16 LINE L1 5341 6161 -5 1275 149 9 14 chr3 126604917 126605131 -100919447 - AluJo SINE Alu -14 298 86 2636 226 17 6 chr3 126605959 126606648 -100917930 + L1P LINE L1 1963 2659 -3487 401 276 69 26 chr3 126606804 126606920 -100917658 - MER5B DNA MER1_type -1 177 57 655 244 43 35 chr3 126606928 126607182 -100917396 - L1ME2 LINE L1 -7 6157 5902 409 216 37 30 chr3 126607181 126607315 -100917263 - L1ME2 LINE L1 -727 5439 5305 * 1354 259 96 11 chr3 126607322 126607894 -100916684 - L1ME2 LINE L1 -1096 5050 4430 252 0 0 0 chr3 126609858 126609886 -100914692 + (TG)n Simple_repeat Simple_repeat 2 29 0 1553 207 45 82 chr3 126609931 126610445 -100914133 + MLT1F1 LTR MaLR 76 505 0 420 201 18 59 chr3 126610448 126610617 -100913961 - L1ME2 LINE L1 -1733 4413 4252 329 294 81 0 chr3 126610622 126610758 -100913820 - L1ME2 LINE L1 -1965 4181 4035 4291 215 24 11 chr3 126610850 126611898 -100912680 - L1P LINE L1 -1907 4239 3179 5734 25 3 1 chr3 126611903 126612580 -100911998 - L1PA4 LINE L1 -1 6154 5477 2708 132 19 13 chr3 126612585 126613062 -100911516 + L1PA15 LINE L1 5349 5828 -337 8996 246 55 14 chr3 126613070 126616371 -100908207 + L1PA12 LINE L1 6 3218 -4366 1231 59 6 6 chr3 126666492 126666662 -100857916 + (TTTC)n Simple_repeat Simple_repeat 4 173 0 2160 112 0 0 chr3 126666662 126666940 -100857638 - AluSx SINE Alu -33 279 2 180 77 0 0 chr3 126667199 126667225 -100857353 + (TG)n Simple_repeat Simple_repeat 2 27 0 250 219 32 24 chr3 126667393 126667516 -100857062 + (TA)n Simple_repeat Simple_repeat 2 125 0 1391 246 3 3 chr3 126667527 126667820 -100856758 - AluJo SINE Alu -17 295 3 346 245 60 54 chr3 126667879 126668063 -100856515 - L1 LINE L1 -3596 2550 2366 2352 220 79 8 chr3 126668189 126668974 -100855604 - L1MCb LINE L1 -3056 3508 2668 534 221 29 64 chr3 126668975 126669115 -100855463 + MER2 DNA MER2_type 1 135 -210 239 254 16 87 chr3 126669714 126669840 -100854738 + LTR4 LTR ERV1 1 117 -479 560 237 19 33 chr3 126670120 126670335 -100854243 + LTR4 LTR ERV1 385 596 0 2744 236 42 114 chr3 126670335 126671830 -100852748 + HERV3 LTR ERV1 1 1387 -7039 * 3060 231 17 12 chr3 126671820 126672478 -100852100 + HERV3 LTR ERV1 1704 2364 -6062 2902 198 10 22 chr3 126672459 126673054 -100851524 + HERV3 LTR ERV1 3495 4082 -4344 * 5167 196 16 39 chr3 126673095 126674199 -100850379 + HERV3 LTR ERV1 4240 5318 -3108 9233 219 24 22 chr3 126674300 126676310 -100848268 + HERV3 LTR ERV1 4734 6746 -1680 616 229 7 7 chr3 126676332 126676476 -100848102 + HERV3 LTR ERV1 8283 8426 0 273 214 15 122 chr3 126676476 126676607 -100847971 + LTR4 LTR ERV1 1 117 -479 525 238 28 37 chr3 126676886 126677100 -100847478 + LTR4 LTR ERV1 385 596 0 222 149 47 9 chr3 126677445 126677552 -100847026 + (TTATA)n Simple_repeat Simple_repeat 1 111 0 1237 128 19 5 chr3 126678109 126678320 -100846258 + MER2 DNA MER2_type 132 345 0 2392 109 0 0 chr3 126678375 126678687 -100845891 + AluSx SINE Alu 1 312 0 2420 227 71 54 chr3 126678705 126680141 -100844437 - L1MCb LINE L1 -3951 2638 970 2293 114 0 10 chr3 126680141 126680448 -100844130 - AluSg SINE Alu -3 307 4 2420 227 71 54 chr3 126680448 126680837 -100843741 - L1MCb LINE L1 -5619 970 589 344 244 35 70 chr3 126680859 126680974 -100843604 + LTR4 LTR ERV1 7 117 -479 807 257 18 35 chr3 126681219 126681503 -100843075 + LTR4 LTR ERV1 318 596 0 1598 288 18 55 chr3 126681505 126682119 -100842459 - L1MCb LINE L1 -5454 591 1 1763 247 43 36 chr3 126682143 126682596 -100841982 - L1MEc LINE L1 -1825 4390 3929 2031 141 35 35 chr3 126682596 126682971 -100841607 - THE1C LTR MaLR 0 375 1 1763 247 43 36 chr3 126682971 126683189 -100841389 - L1MEc LINE L1 -2286 3929 3714 1310 238 95 37 chr3 126683198 126683630 -100840948 - MER4C LTR ERV1 -8 457 1 5182 140 50 41 chr3 126683632 126684913 -100839665 - MER4C-int LTR ERV1 0 6598 4863 1023 128 0 0 chr3 126684913 126685061 -100839517 + AluSp/q SINE Alu 165 312 -1 4604 189 37 47 chr3 126685061 126686214 -100838364 - MER83B-int LTR ERV1 -2812 5308 4167 2366 88 0 0 chr3 126686239 126686545 -100838033 - AluY SINE Alu -5 306 1 1928 174 113 52 chr3 126686571 126687256 -100837322 - MER83B-int LTR ERV1 -1950 2930 2029 789 312 95 10 chr3 126687350 126687959 -100836619 - L1MEc LINE L1 -2570 3645 2985 27 29 0 0 chr3 126688845 126688879 -100835699 + AT_rich Low_complexity Low_complexity 1 34 0 225 132 0 0 chr3 126689663 126689701 -100834877 + (T)n Simple_repeat Simple_repeat 1 38 0 443 211 23 47 chr3 126690504 126690632 -100833946 + LTR25 LTR ERV1 232 356 -438 243 311 12 38 chr3 126690656 126690764 -100833814 + MER61E LTR ERV1 75 189 -380 991 141 23 17 chr3 126690815 126690992 -100833586 + MER61E LTR ERV1 341 518 -51 465 270 60 60 chr3 126691223 126691456 -100833122 - L1MEc LINE L1 -4106 2290 2058 198 0 0 0 chr3 126691482 126691504 -100833074 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 3448 129 20 42 chr3 126691504 126692099 -100832479 - L1MA5A LINE L1 -9 6288 5706 1674 190 0 0 chr3 126692099 126692410 -100832168 + AluJo SINE Alu 3 313 0 3448 129 20 42 chr3 126692410 126692472 -100832106 - L1MA5A LINE L1 -591 5706 5644 1834 139 0 4 chr3 126693279 126693553 -100831025 - AluSq SINE Alu 0 313 41 2071 95 0 4 chr3 126694460 126694734 -100829844 - AluSq SINE Alu 0 313 41 238 316 164 11 chr3 126695621 126695798 -100828780 + MIR SINE MIR 59 262 0 241 186 12 35 chr3 126695874 126695960 -100828618 + (TTTA)n Simple_repeat Simple_repeat 3 86 0 702 352 83 15 chr3 126696699 126697097 -100827481 - L2 LINE L2 -660 2654 2230 279 265 10 20 chr3 126697700 126697802 -100826776 - L1M2 LINE L1 -865 5432 5332 2247 103 0 10 chr3 126697839 126698006 -100826572 - AluSx SINE Alu -13 299 135 2219 89 10 13 chr3 126698006 126698309 -100826269 - AluSq SINE Alu -7 306 5 2247 103 0 10 chr3 126698309 126698443 -100826135 - AluSx SINE Alu -177 135 1 660 330 158 17 chr3 126698643 126699297 -100825281 - L1M4 LINE L1 -1575 4571 3826 244 317 10 0 chr3 126699309 126699410 -100825168 - L1M4 LINE L1 -2414 3732 3631 498 254 118 58 chr3 126699551 126699898 -100824680 - L1M4 LINE L1 -2698 3448 3081 1308 176 0 17 chr3 126700156 126700389 -100824189 - AluJb SINE Alu -19 293 65 29 60 0 0 chr3 126700431 126700481 -100824097 + AT_rich Low_complexity Low_complexity 1 50 0 227 204 0 0 chr3 126700645 126700694 -100823884 + A-rich Low_complexity Low_complexity 2 50 0 418 164 0 11 chr3 126700717 126700797 -100823781 + AluJ/FLAM SINE Alu 1 62 -240 1054 265 9 19 chr3 126700888 126701213 -100823365 + L1ME3A LINE L1 5658 5979 -191 2268 50 3 11 chr3 126701214 126701497 -100823081 + AluY SINE Alu 1 281 -30 1307 215 70 3 chr3 126701540 126701824 -100822754 + AluJo SINE Alu 1 303 -9 644 129 0 17 chr3 126701969 126702061 -100822517 + (GGA)n Simple_repeat Simple_repeat 3 94 -22 2447 58 0 0 chr3 126702061 126702356 -100822222 + AluY SINE Alu 1 295 -16 644 129 0 17 chr3 126702356 126702379 -100822199 + (GGA)n Simple_repeat Simple_repeat 94 116 0 25 65 0 0 chr3 126702495 126702541 -100822037 + AT_rich Low_complexity Low_complexity 1 46 0 285 270 124 0 chr3 126704166 126704255 -100820323 - MIR SINE MIR -5 257 158 332 262 201 0 chr3 126704257 126704406 -100820172 - MIR SINE MIR -9 253 75 184 403 31 0 chr3 126707112 126707241 -100817337 - L2 LINE L2 -292 2980 2848 411 268 16 55 chr3 126707383 126707510 -100817068 + L2 LINE L2 3150 3271 -1 1485 191 65 12 chr3 126707518 126707843 -100816735 + MER2 DNA MER2_type 2 343 -1 1104 266 8 4 chr3 126708600 126708852 -100815726 + MIR SINE MIR 2 254 -8 238 295 14 29 chr3 126711990 126712129 -100812449 - L1MEd LINE L1 -5037 1082 946 314 356 52 0 chr3 126713642 126713777 -100810801 + MIR3 SINE MIR 52 193 -15 330 272 146 69 chr3 126714198 126714444 -100810134 - HAL1 LINE L1 -1129 1378 1114 271 309 81 121 chr3 126716145 126716417 -100808161 - L2 LINE L2 -1 3271 3011 213 370 98 0 chr3 126717016 126717108 -100807470 - L2 LINE L2 -1 3271 3171 374 195 65 24 chr3 126717276 126717399 -100807179 + L1ME4a LINE L1 5979 6106 -15 362 300 193 18 chr3 126717403 126717626 -100806952 + MIR SINE MIR 1 262 0 21 0 0 0 chr3 126717632 126717653 -100806925 + AT_rich Low_complexity Low_complexity 1 21 0 214 347 0 0 chr3 126718403 126718475 -100806103 + L2 LINE L2 3200 3271 -1 376 264 24 32 chr3 126719177 126719302 -100805276 - MIR SINE MIR -67 141 18 2137 147 95 3 chr3 126719775 126720163 -100804415 - MSTB1 LTR MaLR -8 424 1 243 0 0 0 chr3 126720610 126720637 -100803941 + (GA)n Simple_repeat Simple_repeat 1 27 0 234 81 0 0 chr3 126721364 126721401 -100803177 + (GTTTG)n Simple_repeat Simple_repeat 3 39 0 2145 175 83 33 chr3 126722714 126723195 -100801383 - MLT1D LTR MaLR 0 505 1 1636 99 22 11 chr3 126724425 126724698 -100799880 - L1MA8 LINE L1 -3 6288 6013 714 200 35 29 chr3 126724876 126725046 -100799532 + MIR SINE MIR 54 224 -38 2538 49 7 0 chr3 126725049 126725356 -100799222 + AluY SINE Alu 1 309 -2 390 182 0 0 chr3 126725430 126725496 -100799082 + MER63 DNA MER1_type 685 750 -311 3271 156 50 5 chr3 126725783 126726142 -100798436 - MER6A DNA MER2_type -260 605 209 258 105 0 0 chr3 126726142 126726180 -100798398 + (CA)n Simple_repeat Simple_repeat 1 38 0 3271 156 50 5 chr3 126726180 126726398 -100798180 - MER6A DNA MER2_type -656 209 2 241 174 29 14 chr3 126726953 126727022 -100797556 + GA-rich Low_complexity Low_complexity 3 72 0 192 284 0 30 chr3 126727538 126727605 -100796973 + L3 LINE CR1 1230 1294 -283 537 301 41 78 chr3 126727692 126728104 -100796474 - L2 LINE L2 0 3313 2917 2094 130 0 0 chr3 126728119 126728404 -100796174 + AluSx SINE Alu 5 289 -23 554 271 145 5 chr3 126728432 126728639 -100795939 + MER5C DNA MER1_type 1 236 -88 216 411 0 0 chr3 126728763 126728836 -100795742 - MIR SINE MIR -109 99 27 1728 173 0 33 chr3 126729065 126729415 -100795163 - AluJo SINE Alu 0 340 1 2453 34 41 0 chr3 126731000 126731292 -100793286 + AluY SINE Alu 1 304 -7 348 224 0 0 chr3 126731339 126731415 -100793163 - L1MC4a LINE L1 -917 6891 6816 650 153 21 35 chr3 126731568 126731712 -100792866 - Charlie1 DNA MER1_type 0 2761 2620 * 826 237 20 10 chr3 126731700 126731898 -100792680 - Charlie1 DNA MER1_type -2524 237 38 1614 168 63 7 chr3 126732801 126733086 -100791492 - AluJo SINE Alu -11 301 1 1206 288 105 35 chr3 126733468 126733959 -100790619 + L2 LINE L2 2471 2992 -321 1314 193 113 3 chr3 126734266 126734567 -100790011 - MER2 DNA MER2_type 0 345 12 2191 129 10 0 chr3 126735542 126735910 -100788668 - AluSq SINE Alu 0 371 1 1337 100 5 10 chr3 126737112 126737312 -100787266 - L1PA10 LINE L1 -16 6152 5954 6729 144 38 4 chr3 126737335 126738525 -100786053 + Tigger3b DNA MER2_type 1 1230 -1 285 182 15 83 chr3 126738586 126738718 -100785860 - L1ME4a LINE L1 -2 6119 5997 273 269 65 81 chr3 126739056 126739242 -100785336 - MIR SINE MIR -3 259 77 279 274 12 12 chr3 126739653 126739737 -100784841 - L2 LINE L2 -3 3310 3227 186 181 306 14 chr3 126739800 126739872 -100784706 - L2 LINE L2 -337 2977 2885 212 57 0 29 chr3 126740249 126740284 -100784294 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr3 126740287 126740308 -100784270 + AT_rich Low_complexity Low_complexity 1 21 0 344 257 29 9 chr3 126740308 126740413 -100784165 - L1PB4 LINE L1 0 6156 6050 255 241 63 25 chr3 126740458 126740537 -100784041 - MIR3 SINE MIR -2 206 125 658 284 78 64 chr3 126740687 126741109 -100783469 - ERVL LTR ERVL -2076 3688 3261 2159 117 7 10 chr3 126741117 126741424 -100783154 - AluSx SINE Alu -1 311 6 277 328 139 35 chr3 126741838 126741916 -100782662 + L3 LINE CR1 1230 1298 -279 1173 244 195 12 chr3 126741916 126742342 -100782236 + MLT1D LTR MaLR 2 505 0 277 328 139 35 chr3 126742342 126742464 -100782114 + L3 LINE CR1 1298 1451 -126 774 308 162 9 chr3 126743162 126743613 -100780965 + L2 LINE L2 1890 2409 -905 3320 163 73 25 chr3 126743613 126744344 -100780234 - LTR1B LTR ERV1 0 785 1 1808 187 43 32 chr3 126744375 126744914 -100779664 - MLT2A2 LTR ERVL -9 545 1 229 368 246 7 chr3 126745027 126745299 -100779279 + L2 LINE L2 2552 2888 -426 299 314 73 0 chr3 126745624 126745748 -100778830 - MIR SINE MIR -30 232 100 2248 155 28 2 chr3 126745831 126746224 -100778354 + MSTB1 LTR MaLR 30 432 0 225 250 15 15 chr3 126746365 126746433 -100778145 + CT-rich Low_complexity Low_complexity 4 71 0 2112 113 10 17 chr3 126746615 126746917 -100777661 - AluSq SINE Alu -10 303 4 2226 86 10 0 chr3 126747896 126748187 -100776391 - AluY SINE Alu -15 296 3 7491 105 11 0 chr3 126749268 126750344 -100774234 + THE1A-int LTR MaLR 493 1580 0 2436 93 11 11 chr3 126750344 126750699 -100773879 + THE1A LTR MaLR 1 355 0 1798 125 43 10 chr3 126751722 126752027 -100772551 - MER51B LTR ERV1 0 377 63 851 178 0 0 chr3 126752113 126752248 -100772330 + AluJb SINE Alu 156 290 -22 1457 125 4 42 chr3 126752480 126752720 -100771858 + AluSg/x SINE Alu 74 304 -6 1857 281 67 69 chr3 126752901 126753812 -100770766 + L2 LINE L2 8 919 -2395 760 187 29 145 chr3 126753812 126754053 -100770525 + MER20 DNA MER1_type 3 215 -4 1857 281 67 69 chr3 126754053 126754098 -100770480 + L2 LINE L2 919 963 -2351 1652 211 83 14 chr3 126754098 126754534 -100770044 + MLT1C LTR MaLR 2 467 0 1857 281 67 69 chr3 126754534 126754596 -100769982 + L2 LINE L2 963 1025 -2289 2173 87 38 0 chr3 126755285 126755572 -100769006 + AluSq SINE Alu 1 298 -15 15386 147 26 16 chr3 126755912 126758600 -100765978 + Tigger2 DNA MER2_type 4 2718 0 249 33 0 0 chr3 126758671 126758701 -100765877 + (TA)n Simple_repeat Simple_repeat 2 31 0 193 335 47 42 chr3 126759625 126759759 -100764819 + L2 LINE L2 2915 3055 -258 363 245 41 0 chr3 126759973 126760071 -100764507 + MIR SINE MIR 38 139 -123 4840 182 49 36 chr3 126760372 126761620 -100762958 - L1MC1 LINE L1 0 6333 5060 2979 140 50 31 chr3 126762624 126762977 -100761601 - MER41C LTR ERV1 0 554 186 2278 107 3 0 chr3 126762977 126763276 -100761302 + AluSx SINE Alu 1 300 -12 2979 140 50 31 chr3 126763276 126763466 -100761112 - MER41C LTR ERV1 -368 186 1 280 333 89 36 chr3 126763787 126763955 -100760623 + MIR SINE MIR 28 204 -58 245 310 71 3 chr3 126764172 126764271 -100760307 + MIR SINE MIR 38 140 -68 605 102 10 10 chr3 126764725 126764823 -100759755 + MER4A LTR ERV1 1 98 -566 1530 134 3 92 chr3 126764867 126765173 -100759405 + MER4A LTR ERV1 372 650 -14 2452 72 0 25 chr3 126765244 126765563 -100759015 + AluY SINE Alu 1 311 0 1760 115 0 87 chr3 126767468 126767789 -100756789 - MER4A LTR ERV1 0 664 372 3541 58 2 2 chr3 126767805 126768253 -100756325 + LTR7 LTR ERV1 1 448 -2 276 75 25 0 chr3 126768256 126768296 -100756282 - MER4A LTR ERV1 -363 301 261 566 124 21 10 chr3 126768296 126768393 -100756185 - MER4A LTR ERV1 -566 98 1 4247 99 80 22 chr3 126768397 126768483 -100756095 - MER4A-int LTR ERV1 0 6598 6518 2547 95 63 23 chr3 126768483 126768914 -100755664 - LTR7 LTR ERV1 -2 448 1 4247 99 80 22 chr3 126768914 126769586 -100754992 - MER4A-int LTR ERV1 -80 6518 5796 1074 95 58 15 chr3 126769592 126769915 -100754663 - LTR7 LTR ERV1 -4 446 1 10222 104 62 16 chr3 126769915 126771609 -100752969 - MER4A-int LTR ERV1 -802 5796 4014 1665 122 0 0 chr3 126771609 126771839 -100752739 + AluSg/x SINE Alu 71 300 -10 10222 104 62 16 chr3 126771839 126771947 -100752631 - MER4A-int LTR ERV1 -2584 4014 3912 1855 78 146 16 chr3 126771993 126772377 -100752201 - MER4A-int LTR ERV1 -3321 3277 2844 815 177 177 0 chr3 126772391 126772577 -100752001 + LTR8 LTR ERV1 39 257 -434 3446 96 82 53 chr3 126772577 126773205 -100751373 - MER4-int LTR ERV1 -4103 2495 1842 2059 107 7 0 chr3 126773205 126773477 -100751101 + AluSx SINE Alu 19 292 -20 3446 96 82 53 chr3 126773477 126773567 -100751011 - MER4-int LTR ERV1 -4756 1842 1756 297 89 0 0 chr3 126773584 126773629 -100750949 + (CA)n Simple_repeat Simple_repeat 2 46 0 1936 102 31 11 chr3 126773631 126773977 -100750601 - MER4-int LTR ERV1 -5613 1145 728 213 65 0 0 chr3 126773977 126774008 -100750570 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1936 102 31 11 chr3 126774008 126774192 -100750386 - MER4-int LTR ERV1 -6030 728 549 2154 128 13 3 chr3 126774225 126774529 -100750049 - AluSx SINE Alu -5 307 1 187 234 0 64 chr3 126774658 126774705 -100749873 + L2 LINE L2 3205 3248 -24 1173 147 28 0 chr3 126774732 126774950 -100749628 - L1MA9 LINE L1 0 6312 6089 3909 46 27 0 chr3 126775162 126775639 -100748939 - LTR2B LTR ERV1 0 490 1 453 298 43 108 chr3 126775801 126776331 -100748247 + MLT1K LTR MaLR 45 540 -48 242 217 14 0 chr3 126776802 126776871 -100747707 + GA-rich Low_complexity Low_complexity 2 71 0 237 83 0 0 chr3 126776919 126776955 -100747623 + (A)n Simple_repeat Simple_repeat 1 36 0 48 0 0 0 chr3 126777447 126777495 -100747083 + AT_rich Low_complexity Low_complexity 1 48 0 737 331 81 25 chr3 126777784 126778219 -100746359 - L2 LINE L2 -569 2745 2287 359 222 62 0 chr3 126778258 126778339 -100746239 + Tigger7 DNA MER2_type 2502 2587 0 2198 76 35 0 chr3 126778825 126779114 -100745464 - AluY SINE Alu -12 299 1 29 106 0 0 chr3 126780069 126780182 -100744396 + AT_rich Low_complexity Low_complexity 1 113 0 523 176 56 0 chr3 126780272 126780397 -100744181 - L1MC3 LINE L1 -1 7784 7653 249 105 0 0 chr3 126780403 126780441 -100744137 - L1 LINE L1 -1579 4567 4530 1970 218 16 14 chr3 126780446 126780955 -100743623 - L1 LINE L1 -781 6325 5816 1530 174 15 3 chr3 126780950 126781283 -100743295 - L1 LINE L1 -1526 5580 5244 * 284 262 18 77 chr3 126781280 126781448 -100743130 - L1 LINE L1 -5111 1919 1762 * 981 280 25 64 chr3 126782011 126782496 -100742082 - L1 LINE L1 -5807 1230 765 2298 98 0 0 chr3 126783251 126783546 -100741032 + AluSc SINE Alu 1 295 -14 377 371 13 13 chr3 126783575 126783734 -100740844 + L2 LINE L2 2816 2974 -298 3999 116 22 6 chr3 126783766 126784412 -100740166 - L1MA2 LINE L1 0 6304 5649 2430 171 83 25 chr3 126784413 126784929 -100739649 - MER21A LTR ERV1 0 931 386 1235 151 78 8 chr3 126784933 126785178 -100739400 - MER21A LTR ERV1 -667 264 3 618 256 78 78 chr3 126785210 126785518 -100739060 + L2 LINE L2 3006 3313 0 3101 158 12 29 chr3 126785566 126786162 -100738416 + LTR60 LTR ERV1 1 586 0 3478 60 0 7 chr3 126786466 126786917 -100737661 - LTR7 LTR ERV1 -2 448 1 1055 66 12 30 chr3 126786917 126787083 -100737495 - HERVH LTR ERV1 0 7713 7551 * 1456 117 0 22 chr3 126787074 126787305 -100737273 - HERVH LTR ERV1 -3000 4713 4488 3217 107 4 6 chr3 126787307 126787810 -100736768 - HERVH LTR ERV1 -3720 3993 3492 928 120 7 0 chr3 126787800 126787950 -100736628 - HERVH LTR ERV1 -4423 3290 3140 * 19755 87 7 20 chr3 126787929 126790966 -100733612 - HERVH LTR ERV1 -4718 2995 1 3459 55 0 9 chr3 126790968 126791420 -100733158 - LTR7 LTR ERV1 -2 448 1 261 278 125 72 chr3 126791443 126791875 -100732703 - L1M4 LINE L1 -1103 5043 4589 341 338 60 30 chr3 126791997 126792198 -100732380 - MIR SINE MIR -42 220 14 24 0 0 0 chr3 126792812 126792836 -100731742 + AT_rich Low_complexity Low_complexity 1 24 0 29 0 0 0 chr3 126793381 126793410 -100731168 + AT_rich Low_complexity Low_complexity 1 29 0 731 233 111 117 chr3 126793600 126794149 -100730429 + HAL1 LINE L1 832 1377 -1130 2021 161 59 43 chr3 126794241 126794663 -100729915 - MSTB1 LTR MaLR 0 432 4 22 0 0 30 chr3 126794883 126794894 -100729684 + AT_rich Low_complexity Low_complexity 1 11 -21 1781 83 140 11 chr3 126794894 126795158 -100729420 - AluY SINE Alu -13 298 1 22 0 0 30 chr3 126795158 126795179 -100729399 + AT_rich Low_complexity Low_complexity 11 32 0 1723 212 39 21 chr3 126795245 126795632 -100728946 + MSTD LTR MaLR 1 394 -2 5206 224 100 55 chr3 126795632 126797276 -100727302 + MSTD-int LTR MaLR 3 1721 -14 1511 219 35 9 chr3 126797289 126797636 -100726942 + MSTD LTR MaLR 1 356 -40 635 126 0 39 chr3 126797655 126797758 -100726820 + FLAM_C SINE Alu 23 121 -22 228 196 0 0 chr3 126797773 126797819 -100726759 + MSTD LTR MaLR 411 456 -1 211 324 40 27 chr3 126798150 126798224 -100726354 + MIR3 SINE MIR 118 192 -16 526 178 35 99 chr3 126798794 126798891 -100725687 - MER53 DNA DNA 0 189 87 2087 121 88 21 chr3 126798891 126799231 -100725347 + THE1B LTR MaLR 1 363 -1 11367 104 6 6 chr3 126799232 126800812 -100723766 + THE1B-int LTR MaLR 1 1580 0 2078 106 88 24 chr3 126800814 126801154 -100723424 + THE1B LTR MaLR 3 364 0 526 178 35 99 chr3 126801154 126801190 -100723388 - MER53 DNA DNA -103 86 49 1957 168 3 7 chr3 126801190 126801493 -100723085 - AluSx SINE Alu -10 302 1 526 178 35 99 chr3 126801493 126801555 -100723023 - MER53 DNA DNA -140 49 1 223 256 128 0 chr3 126801591 126801669 -100722909 + L2 LINE L2 3185 3272 0 23 68 0 0 chr3 126802329 126802373 -100722205 + AT_rich Low_complexity Low_complexity 1 44 0 309 239 76 22 chr3 126802512 126802604 -100721974 + MIR SINE MIR 108 204 -58 2240 112 0 3 chr3 126802884 126803178 -100721400 + AluSc SINE Alu 1 293 -16 360 0 0 0 chr3 126803201 126803241 -100721337 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 246 105 0 0 chr3 126803298 126803336 -100721242 + (TC)n Simple_repeat Simple_repeat 1 38 0 431 312 82 33 chr3 126804099 126804647 -100719931 + HAL1 LINE L1 1128 1702 -805 876 332 7 12 chr3 126804671 126805087 -100719491 + L1PA16 LINE L1 2 415 -7166 720 297 31 10 chr3 126805754 126806116 -100718462 + L1PA16 LINE L1 2182 2542 -5032 11585 215 22 10 chr3 126806118 126806219 -100718359 + L1PA16 LINE L1 3528 3626 -3978 2541 50 0 3 chr3 126806219 126806520 -100718058 + AluY SINE Alu 1 300 -11 11585 215 22 10 chr3 126806520 126807213 -100717365 + L1PA16 LINE L1 3626 4309 -3295 2114 108 3 17 chr3 126807213 126807510 -100717068 + AluSc SINE Alu 1 293 -16 11585 215 22 10 chr3 126807510 126810638 -100713940 + L1PA16 LINE L1 4309 7492 -112 251 136 0 0 chr3 126810638 126810682 -100713896 - L1PA16 LINE L1 -19 6147 6104 349 292 14 28 chr3 126811018 126811162 -100713416 + L1ME2 LINE L1 5951 6092 -72 1460 138 27 0 chr3 126811396 126811657 -100712921 + L1MB7 LINE L1 5703 5970 -214 2617 39 0 0 chr3 126811817 126812125 -100712453 + AluY SINE Alu 1 308 -3 221 337 161 20 chr3 126812963 126813212 -100711366 + L2 LINE L2 2446 2729 -585 318 106 0 0 chr3 126814246 126814293 -100710285 - AluSp/q SINE Alu -8 295 249 540 186 21 190 chr3 126814629 126814956 -100709622 - LTR16A1 LTR ERVL -179 278 7 2126 158 29 43 chr3 126816155 126816220 -100708358 - MLT2D LTR ERVL 0 414 350 2209 124 0 16 chr3 126816220 126816535 -100708043 - AluSg SINE Alu 0 310 1 2126 158 29 43 chr3 126816535 126816887 -100707691 - MLT2D LTR ERVL -64 350 3 251 146 0 0 chr3 126817649 126817690 -100706888 - MER67A LTR ERV1 0 543 503 1369 238 65 52 chr3 126817698 126818007 -100706571 + L1ME3A LINE L1 5561 5864 -306 2736 74 8 0 chr3 126818007 126818359 -100706219 - THE1A LTR MaLR 0 355 1 1369 238 65 52 chr3 126818359 126818379 -100706199 + L1ME3A LINE L1 5864 5882 -288 2132 215 15 11 chr3 126818379 126818834 -100705744 + LTR40b LTR ERVL 4 460 -2 1369 238 65 52 chr3 126818834 126819105 -100705473 + L1ME3A LINE L1 5882 6170 0 2153 121 3 3 chr3 126820763 126821070 -100703508 + AluSc SINE Alu 1 307 -2 376 371 72 60 chr3 126821165 126821513 -100703065 - L2 LINE L2 -3 3269 2918 2264 78 0 36 chr3 126821754 126822062 -100702516 + AluY SINE Alu 1 297 -14 227 216 0 0 chr3 126823881 126823932 -100700646 - MLT1K LTR MaLR -17 571 521 445 221 57 8 chr3 126823933 126824055 -100700523 + MIR SINE MIR 106 233 -29 266 230 14 40 chr3 126824416 126824490 -100700088 + L2 LINE L2 3201 3272 0 947 204 0 0 chr3 126824929 126825101 -100699477 + FRAM SINE Alu 5 176 0 390 299 149 46 chr3 126825109 126825437 -100699141 - L1MC4a LINE L1 -1400 6408 6047 1005 263 21 4 chr3 126826587 126826830 -100697748 + MIR SINE MIR 14 260 -2 21 0 0 0 chr3 126827405 126827426 -100697152 + AT_rich Low_complexity Low_complexity 1 21 0 210 406 53 0 chr3 126828451 126828584 -100695994 + L2 LINE L2 3114 3253 -19 322 331 205 0 chr3 126828917 126829068 -100695510 - MER5A DNA MER1_type -4 185 4 270 303 128 9 chr3 126829099 126829208 -100695370 - L2 LINE L2 -2 3270 3149 826 178 51 34 chr3 126829291 126829527 -100695051 + L1PA16 LINE L1 5926 6165 -1 1581 151 21 0 chr3 126829569 126829860 -100694718 + L1MC1 LINE L1 5255 5551 -793 788 285 16 40 chr3 126830198 126830451 -100694127 - MIR SINE MIR -4 258 12 243 294 59 29 chr3 126830440 126830542 -100694036 + MIR SINE MIR 158 262 0 * 259 244 89 32 chr3 126831525 126831648 -100692930 + MLT1J LTR MaLR 1 130 -381 3897 126 29 33 chr3 126832297 126832724 -100691854 + L1PA13 LINE L1 5495 5919 -244 2494 40 0 43 chr3 126832724 126833047 -100691531 + AluY SINE Alu 1 309 -2 3897 126 29 33 chr3 126833047 126833280 -100691298 + L1PA13 LINE L1 5919 6152 -11 3234 152 64 3 chr3 126833285 126833896 -100690682 + L1MC1 LINE L1 5679 6326 -7 287 411 11 11 chr3 126834015 126834195 -100690383 + MER5A DNA MER1_type 7 186 -3 279 0 0 0 chr3 126835077 126835108 -100689470 + (CA)n Simple_repeat Simple_repeat 2 32 0 2439 56 3 10 chr3 126837231 126837537 -100687041 - AluY SINE Alu -6 305 2 451 75 15 0 chr3 126838446 126838513 -100686065 - L1MB7 LINE L1 -18 6166 6099 23 78 0 0 chr3 126838984 126839035 -100685543 + AT_rich Low_complexity Low_complexity 1 51 0 190 261 43 0 chr3 126841529 126841575 -100683003 - MIR SINE MIR -164 98 51 440 191 55 27 chr3 126841753 126841863 -100682715 - MER112 DNA MER1_type -20 240 128 766 169 17 58 chr3 126841886 126842058 -100682520 + MER20 DNA MER1_type 34 198 -21 189 0 0 0 chr3 126842140 126842161 -100682417 + (TTG)n Simple_repeat Simple_repeat 2 22 0 2051 123 14 0 chr3 126842221 126842513 -100682065 + AluSx SINE Alu 1 296 -16 2229 131 0 3 chr3 126843409 126843722 -100680856 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 126844024 126844045 -100680533 + AT_rich Low_complexity Low_complexity 1 21 0 207 339 25 34 chr3 126844485 126844603 -100679975 - L2 LINE L2 -219 3053 2937 215 359 97 10 chr3 126845090 126845193 -100679385 + L2 LINE L2 2766 2877 -437 232 281 0 0 chr3 126845291 126845348 -100679230 - MER91A DNA MER1_type -118 78 22 32 43 0 0 chr3 126845569 126845615 -100678963 + AT_rich Low_complexity Low_complexity 1 46 0 301 323 40 40 chr3 126845861 126845985 -100678593 - L2 LINE L2 -1 3271 3148 333 315 25 46 chr3 126846232 126846470 -100678108 + MARNA DNA Mariner 24 256 -330 4446 198 60 33 chr3 126846479 126848575 -100676003 - L1MB5 LINE L1 -8 6166 4007 220 273 0 0 chr3 126848859 126848914 -100675664 + A-rich Low_complexity Low_complexity 4 58 0 188 273 36 0 chr3 126849709 126849764 -100674814 + L2 LINE L2 3256 3312 -1 1241 161 126 79 chr3 126849786 126850216 -100674362 + LTR7 LTR ERV1 1 450 0 1567 221 58 16 chr3 126850217 126850597 -100673981 - MSTD LTR MaLR 0 396 1 3169 233 176 50 chr3 126850597 126851864 -100672714 - MSTD-int LTR MaLR 0 1651 225 23 0 0 0 chr3 126852470 126852493 -100672085 + AT_rich Low_complexity Low_complexity 1 23 0 2308 99 3 6 chr3 126852943 126853255 -100671323 - AluSp SINE Alu -2 311 1 206 302 48 0 chr3 126853383 126853446 -100671132 - L2 LINE L2 -77 3236 3171 2266 105 3 0 chr3 126853493 126853789 -100670789 + AluSx SINE Alu 1 297 -15 213 313 50 12 chr3 126854205 126854285 -100670293 + MIR3 SINE MIR 74 156 -52 2277 88 3 0 chr3 126854856 126855150 -100669428 - AluSq SINE Alu -18 295 1 1035 93 7 0 chr3 126855366 126855506 -100669072 - AluSp/q SINE Alu -9 304 164 2300 73 0 22 chr3 126855637 126855954 -100668624 + AluY SINE Alu 1 310 -1 263 224 45 46 chr3 126856107 126856302 -100668276 - MER97a DNA MER1_type? -27 867 785 2674 227 97 10 chr3 126856419 126857109 -100667469 - MER97b DNA MER1_type? -195 858 93 2345 83 3 3 chr3 126857109 126857410 -100667168 + AluSp SINE Alu 1 301 -12 2674 227 97 10 chr3 126857410 126857491 -100667087 - MER97b DNA MER1_type? -960 93 20 222 314 110 62 chr3 126857709 126858018 -100666560 + L2 LINE L2 2369 2692 -622 2492 56 16 0 chr3 126858023 126858328 -100666250 - AluY SINE Alu -1 310 1 2139 117 0 0 chr3 126858420 126858718 -100665860 - AluSg SINE Alu -12 298 1 25 51 0 0 chr3 126859187 126859226 -100665352 + AT_rich Low_complexity Low_complexity 1 39 0 333 0 0 0 chr3 126860411 126860448 -100664130 + (CA)n Simple_repeat Simple_repeat 2 38 0 4257 71 7 12 chr3 126860806 126861384 -100663194 + L1PA8A LINE L1 5557 6131 0 827 218 114 0 chr3 126861557 126861759 -100662819 - MIR SINE MIR -34 228 4 1745 139 0 0 chr3 126863261 126863512 -100661066 - AluSq SINE Alu -62 251 1 22 80 0 0 chr3 126863580 126863630 -100660948 + AT_rich Low_complexity Low_complexity 1 50 0 670 255 60 20 chr3 126863696 126863896 -100660682 - MIR SINE MIR -7 255 48 696 131 0 0 chr3 126864388 126864487 -100660091 + AluSq SINE Alu 3 101 -211 1154 100 0 123 chr3 126864719 126864939 -100659639 + AluSq SINE Alu 111 303 -10 207 0 0 0 chr3 126865053 126865076 -100659502 + (T)n Simple_repeat Simple_repeat 1 23 0 180 111 0 0 chr3 126867700 126867727 -100656851 + (A)n Simple_repeat Simple_repeat 1 27 0 284 334 32 38 chr3 126868310 126868480 -100656098 + MER5A DNA MER1_type 1 180 -9 602 335 120 6 chr3 126868606 126868940 -100655638 + LTR16A LTR ERVL 1 372 -78 847 165 42 196 chr3 126869521 126869652 -100654926 + MLT1A2 LTR MaLR 31 180 -194 1695 193 3 3 chr3 126869652 126869937 -100654641 + AluJo SINE Alu 5 289 -23 847 165 42 196 chr3 126869937 126870163 -100654415 + MLT1A2 LTR MaLR 180 333 -41 458 191 0 0 chr3 126870170 126870259 -100654319 + AluJ/FRAM SINE Alu 224 312 0 1237 284 24 33 chr3 126870615 126871034 -100653544 - LTR16A LTR ERVL -20 430 16 3551 163 52 0 chr3 126871556 126872212 -100652366 - L1MC1 LINE L1 -4 6329 5640 269 200 0 0 chr3 126872866 126872916 -100651662 - MLT1J LTR MaLR -363 148 99 1220 156 28 0 chr3 126872966 126873178 -100651400 + MER20 DNA MER1_type 2 219 0 306 0 0 0 chr3 126873343 126873377 -100651201 + (CA)n Simple_repeat Simple_repeat 1 34 0 906 255 38 26 chr3 126873592 126873859 -100650719 - LTR16C LTR ERVL -1 490 221 1233 194 110 49 chr3 126873862 126874207 -100650371 - MLT1D LTR MaLR -2 503 138 816 263 45 24 chr3 126874204 126874451 -100650127 + LTR16C LTR ERVL 238 489 -2 * 619 177 39 8 chr3 126874543 126874673 -100649905 - MLT1D LTR MaLR -371 134 1 520 295 50 40 chr3 126874673 126874872 -100649706 - LTR16C LTR ERVL -267 224 24 2090 105 0 0 chr3 126876494 126876798 -100647780 + L1PB1 LINE L1 5848 6151 0 7528 99 41 20 chr3 126876954 126878174 -100646404 - MER4-int LTR ERV1 -1512 5086 3841 3894 137 72 44 chr3 126878179 126878430 -100646148 - MER4-int LTR ERV1 -2919 3679 3437 2303 78 14 0 chr3 126878430 126878724 -100645854 + AluY SINE Alu 1 298 -13 3894 137 72 44 chr3 126878724 126879389 -100645189 - MER4-int LTR ERV1 -3161 3437 2737 1376 150 71 0 chr3 126879389 126879629 -100644949 + LTR8 LTR ERV1 1 257 -434 4067 86 70 19 chr3 126879629 126880131 -100644447 - MER4-int LTR ERV1 -4103 2495 1946 2142 136 0 7 chr3 126880131 126880432 -100644146 - AluSx SINE Alu -13 299 1 4067 86 70 19 chr3 126880432 126880625 -100643953 - MER4-int LTR ERV1 -4652 1946 1764 201 39 0 0 chr3 126880646 126880672 -100643906 + (CA)n Simple_repeat Simple_repeat 1 26 0 2651 123 35 32 chr3 126880672 126881335 -100643243 - MER4-int LTR ERV1 -5610 1148 427 1347 134 201 27 chr3 126881343 126881672 -100642906 - Tigger2 DNA MER2_type -2332 386 1 22 35 0 0 chr3 126881906 126881935 -100642643 + AT_rich Low_complexity Low_complexity 1 29 0 238 278 107 96 chr3 126882006 126882557 -100642021 + L1ME4a LINE L1 5536 6092 -29 918 197 21 10 chr3 126882710 126882894 -100641684 + MLT1B LTR MaLR 3 188 -202 2649 160 36 2 chr3 126882894 126883344 -100641234 + MER31A LTR ERV1 1 465 -20 2834 73 15 36 chr3 126883440 126883852 -100640726 - L1PA10 LINE L1 -2 6166 5764 3414 71 22 2 chr3 126883864 126884356 -100640222 + L1PA10 LINE L1 5254 5755 -413 939 160 62 26 chr3 126884393 126884587 -100639991 + MLT1B LTR MaLR 190 390 0 257 229 127 57 chr3 126884653 126884810 -100639768 + MER112 DNA MER1_type 1 168 -92 869 130 8 0 chr3 126885229 126885352 -100639226 + FLAM_C SINE Alu 1 124 -9 23 0 0 0 chr3 126885352 126885375 -100639203 + AT_rich Low_complexity Low_complexity 1 23 0 2168 94 53 42 chr3 126885388 126885748 -100638830 + THE1B LTR MaLR 1 364 0 495 285 155 5 chr3 126886096 126886289 -100638289 - MIR SINE MIR -35 227 6 428 205 49 102 chr3 126886568 126886773 -100637805 - L2 LINE L2 -774 2540 2347 226 333 12 0 chr3 126887118 126887199 -100637379 - L1ME LINE L1 -535 5586 5505 2720 140 86 75 chr3 126887352 126888023 -100636555 - L1MA5 LINE L1 0 6300 5622 2176 112 3 3 chr3 126888130 126888433 -100636145 + AluSp SINE Alu 1 303 -10 1147 219 3 74 chr3 126888512 126888719 -100635859 - L1MA4 LINE L1 -170 6130 5961 1916 135 0 4 chr3 126888719 126889000 -100635578 - AluSx SINE Alu -32 280 1 1147 219 3 74 chr3 126889000 126889171 -100635407 - L1MA4 LINE L1 -339 5961 5779 275 238 105 35 chr3 126889216 126889359 -100635219 + HsTC2 DNA Tc2 1628 1780 -118 2096 117 6 46 chr3 126889364 126889689 -100634889 + AluSp SINE Alu 1 312 -1 216 0 0 0 chr3 126889867 126889891 -100634687 + (A)n Simple_repeat Simple_repeat 1 24 0 389 235 96 9 chr3 126889891 126890006 -100634572 + MER5B DNA MER1_type 50 174 -4 767 228 40 0 chr3 126890109 126890311 -100634267 - MER6B DNA MER2_type 0 210 1 1418 112 51 5 chr3 126892209 126892423 -100632155 + AluSq SINE Alu 1 224 -89 1233 174 237 24 chr3 126892425 126893354 -100631224 + SATR1 Satellite Satellite 1 1126 -2 554 247 174 66 chr3 126893371 126893658 -100630920 + SATR1 Satellite Satellite 151 468 -2 2163 147 117 40 chr3 126893696 126894848 -100629730 + SATR1 Satellite Satellite 1 1241 0 2127 175 111 11 chr3 126894877 126896447 -100628131 + SATR1 Satellite Satellite 1 1727 -3 2060 139 0 7 chr3 126896510 126896805 -100627773 + AluSx SINE Alu 1 293 -19 2027 231 104 21 chr3 126896839 126897500 -100627078 + L1MD3 LINE L1 7141 7856 -139 242 245 69 39 chr3 126897496 126897598 -100626980 + L1MC4 LINE L1 7938 8042 0 * 1843 245 82 19 chr3 126899174 126899848 -100624730 + HsTC2a DNA Tc2 4 719 -25 258 32 0 0 chr3 126900102 126900133 -100624445 + (TA)n Simple_repeat Simple_repeat 2 32 0 243 200 18 18 chr3 126900812 126900867 -100623711 + MIR SINE MIR 206 260 -2 21 36 0 0 chr3 126903064 126903092 -100621486 + AT_rich Low_complexity Low_complexity 1 28 0 31 26 0 0 chr3 126903119 126903157 -100621421 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr3 126903395 126903417 -100621161 + AT_rich Low_complexity Low_complexity 1 22 0 2539 74 0 0 chr3 126905263 126905574 -100619004 + AluY SINE Alu 1 311 0 794 266 7 16 chr3 126906347 126906677 -100617901 + AluY SINE Alu 1 327 0 22 35 0 0 chr3 126907401 126907430 -100617148 + AT_rich Low_complexity Low_complexity 1 29 0 2855 253 134 39 chr3 126908165 126909453 -100615125 + L2 LINE L2 1893 3312 -1 286 252 163 8 chr3 126909707 126909830 -100614748 - L2 LINE L2 -970 2344 2203 2221 95 10 3 chr3 126910817 126911112 -100613466 + AluSc SINE Alu 1 297 -12 190 351 117 0 chr3 126911647 126911741 -100612837 - L2 LINE L2 -23 3249 3145 2152 129 7 0 chr3 126914084 126914386 -100610192 + AluSq SINE Alu 1 304 -9 1248 132 78 5 chr3 126914479 126914698 -100609880 - MER46A DNA MER2_type -1 235 1 349 313 91 45 chr3 126914783 126914959 -100609619 - MIR SINE MIR -70 192 9 1853 175 26 3 chr3 126915502 126915851 -100608727 + MLT2D LTR ERVL 1 357 -57 497 173 0 0 chr3 126915923 126916004 -100608574 - Tigger7 DNA MER2_type 0 2491 2411 1244 189 36 16 chr3 126916015 126916264 -100608314 - Tigger7 DNA MER2_type -2212 275 22 296 102 41 0 chr3 126916267 126916316 -100608262 + MLT2D LTR ERVL 470 520 0 945 173 127 15 chr3 126916796 126916993 -100607585 + MER20 DNA MER1_type 1 219 0 365 245 157 10 chr3 126917389 126917491 -100607087 - L2 LINE L2 0 3313 3197 251 338 128 27 chr3 126917514 126917662 -100606916 - L2 LINE L2 -6 3266 3104 2172 84 28 3 chr3 126917779 126918066 -100606512 + AluSc SINE Alu 1 294 -15 2105 89 69 0 chr3 126919234 126919525 -100605053 + AluSq SINE Alu 1 311 -2 458 297 123 9 chr3 126920526 126920738 -100603840 - MIR SINE MIR -14 248 13 21 36 0 0 chr3 126922317 126922345 -100602233 + AT_rich Low_complexity Low_complexity 1 28 0 2180 78 14 14 chr3 126922357 126922653 -100601925 - AluY SINE Alu -15 296 1 23 0 0 0 chr3 126923531 126923554 -100601024 + AT_rich Low_complexity Low_complexity 1 23 0 1207 169 131 77 chr3 126923907 126924334 -100600244 + LTR7 LTR ERV1 1 450 0 23 0 0 0 chr3 126924782 126924805 -100599773 + AT_rich Low_complexity Low_complexity 1 23 0 333 250 51 64 chr3 126925849 126925972 -100598606 - MIR3 SINE MIR -13 195 73 6424 40 21 3 chr3 126925972 126926742 -100597836 + SVA Other Other 600 1383 -3 333 250 51 64 chr3 126926742 126926774 -100597804 - MIR3 SINE MIR -135 73 42 290 49 0 0 chr3 126926851 126926892 -100597686 - AluY SINE Alu -9 293 253 867 101 180 0 chr3 126926892 126927031 -100597547 - AluY SINE Alu -146 165 2 2016 85 57 18 chr3 126927059 126927342 -100597236 + AluSc SINE Alu 1 294 -15 261 65 39 65 chr3 126928244 126928321 -100596257 + (TCTA)n Simple_repeat Simple_repeat 2 76 0 2378 76 0 7 chr3 126928440 126928743 -100595835 - AluSp SINE Alu -12 301 1 833 282 149 33 chr3 126929056 126929543 -100595035 - L2 LINE L2 -2 3311 2768 21 0 0 0 chr3 126930505 126930526 -100594052 + AT_rich Low_complexity Low_complexity 1 21 0 209 57 29 0 chr3 126931358 126931393 -100593185 + (CGGGA)n Simple_repeat Simple_repeat 2 37 0 359 313 0 9 chr3 126932200 126932312 -100592266 + MIR3 SINE MIR 81 191 -17 2295 84 6 10 chr3 126932482 126932793 -100591785 + AluSg SINE Alu 1 310 0 6434 96 5 3 chr3 126933780 126934632 -100589946 - LTR5 LTR ERVK 0 969 117 645 26 52 0 chr3 126934633 126934710 -100589868 - LTR5 LTR ERVK -888 81 1 242 353 78 35 chr3 126934805 126934921 -100589657 - L2 LINE L2 -40 3232 3112 192 297 0 14 chr3 126935081 126935155 -100589423 - L2 LINE L2 -302 2970 2898 1971 113 34 3 chr3 126935197 126935490 -100589088 + AluSx SINE Alu 1 302 -10 246 313 163 67 chr3 126935503 126936634 -100587944 - L2 LINE L2 -443 2871 1633 2475 77 0 0 chr3 126936646 126936944 -100587634 + AluY SINE Alu 3 300 -11 1868 102 31 41 chr3 126937011 126937304 -100587274 - AluSx SINE Alu -22 290 1 227 191 0 24 chr3 126937723 126937765 -100586813 - L2 LINE L2 -8 3264 3224 268 284 313 11 chr3 126938015 126938191 -100586387 + L3 LINE CR1 147 375 -1202 787 273 189 26 chr3 126938415 126938796 -100585782 + L3 LINE CR1 404 846 -731 267 323 65 13 chr3 126939789 126939944 -100584634 + L2 LINE L2 3034 3196 -117 14497 41 3 4 chr3 126940065 126941841 -100582737 - L1P LINE L1 -1328 4818 3044 5390 86 4 19 chr3 126942723 126942800 -100581778 + LTR17 LTR ERV1 1 78 -702 2494 57 0 25 chr3 126942800 126943115 -100581463 - AluY SINE Alu -4 307 1 5390 86 4 19 chr3 126943115 126943779 -100580799 + LTR17 LTR ERV1 78 731 -49 861 211 98 68 chr3 126943858 126944213 -100580365 - MLT1F LTR MaLR 0 542 234 763 81 17 139 chr3 126945531 126945583 -100578995 - L1M1 LINE L1 -871 5431 5374 2144 133 3 0 chr3 126945583 126945885 -100578693 - AluSx SINE Alu -9 303 1 763 81 17 139 chr3 126945885 126946004 -100578574 - L1M1 LINE L1 -928 5374 5281 692 248 85 30 chr3 126946227 126946522 -100578056 - L1ME3A LINE L1 -221 5949 5639 2223 112 3 16 chr3 126946592 126946906 -100577672 + AluSq SINE Alu 1 310 -3 718 221 0 0 chr3 126947009 126947131 -100577447 - FLAM_C SINE Alu -20 123 2 440 253 172 0 chr3 126947157 126947440 -100577138 - L1ME3A LINE L1 -653 5511 5191 197 295 252 9 chr3 126947987 126948197 -100576381 + MIR SINE MIR 2 262 0 482 246 0 48 chr3 126948977 126949103 -100575475 + MIR SINE MIR 36 155 -107 359 233 138 51 chr3 126950757 126951050 -100573528 - LTR48 LTR ERV1 0 737 338 267 276 52 52 chr3 126951087 126951221 -100573357 - LTR48B LTR ERV1 -380 264 131 341 253 19 25 chr3 126951809 126951971 -100572607 - FRAM SINE Alu -5 161 1 508 321 37 28 chr3 126952322 126952537 -100572041 - MIR SINE MIR -44 218 2 1684 179 140 11 chr3 126952839 126953190 -100571388 + MSTD LTR MaLR 1 396 0 23 0 0 0 chr3 126954090 126954113 -100570465 + AT_rich Low_complexity Low_complexity 1 23 0 492 290 14 7 chr3 126954291 126954429 -100570149 - MER5B DNA MER1_type -2 176 38 5535 92 0 4 chr3 126954487 126955181 -100569397 + LTR8 LTR ERV1 1 691 0 1520 118 0 0 chr3 126955248 126955452 -100569126 - AluY SINE Alu -107 204 1 2457 70 3 0 chr3 126956745 126957044 -100567534 + AluY SINE Alu 1 300 -11 230 100 0 25 chr3 126957502 126957542 -100567036 + L1M1 LINE L1 5456 5494 -808 380 262 119 8 chr3 126957888 126958014 -100566564 + MIR SINE MIR 109 248 -14 417 341 66 13 chr3 126958669 126958895 -100565683 + MIR SINE MIR 20 257 -5 485 114 0 13 chr3 126959090 126959169 -100565409 - L1MA1 LINE L1 -6 6296 6219 575 297 89 73 chr3 126959962 126960232 -100564346 - L1MC4a LINE L1 -84 6037 5773 1526 119 5 9 chr3 126960232 126960451 -100564127 - AluSg/x SINE Alu -10 300 83 575 297 89 73 chr3 126960451 126960874 -100563704 - L1MC4a LINE L1 -348 5773 5332 364 280 19 28 chr3 126961203 126961310 -100563268 - MIR3 SINE MIR -4 204 99 1047 75 6 12 chr3 126962963 126963124 -100561454 + (TTC)n Simple_repeat Simple_repeat 2 161 0 284 236 194 0 chr3 126963657 126963729 -100560849 + MER63 DNA MER1_type 41 752 -84 252 325 12 0 chr3 126963729 126963812 -100560766 + MER63 DNA MER1_type 977 1060 0 1796 155 75 33 chr3 126964137 126964472 -100560106 + MLT1A1 LTR MaLR 17 365 0 2037 210 58 49 chr3 126965106 126965220 -100559358 + MLT1F LTR MaLR 24 135 -407 1877 159 0 17 chr3 126965220 126965544 -100559034 - AluJb SINE Alu 0 312 3 2037 210 58 49 chr3 126965544 126965943 -100558635 + MLT1F LTR MaLR 135 542 0 358 169 0 0 chr3 126966296 126966355 -100558223 + LTR67 LTR ERVL 453 511 -46 587 279 99 44 chr3 126968248 126968520 -100556058 - L2 LINE L2 -2 3311 3025 645 296 84 9 chr3 126968572 126969038 -100555540 - L1ME LINE L1 -420 5742 5208 378 317 28 28 chr3 126969124 126969269 -100555309 - L2 LINE L2 -4 3309 3165 270 95 0 0 chr3 126969969 126970011 -100554567 + (A)n Simple_repeat Simple_repeat 1 42 0 405 261 95 86 chr3 126972064 126972286 -100552292 + MLT1L LTR MaLR 35 258 -357 269 289 24 0 chr3 126972437 126972520 -100552058 + MIR3 SINE MIR 101 185 -23 2763 141 16 25 chr3 126973138 126973572 -100551006 + Tigger2a DNA MER2_type 4 433 -1 951 285 42 49 chr3 126974247 126974654 -100549924 - MLT1J LTR MaLR 0 511 108 727 284 164 26 chr3 126974790 126975181 -100549397 - MLT1H LTR MaLR -104 445 1 600 93 0 0 chr3 126975212 126975287 -100549291 + THE1B LTR MaLR 1 75 -289 2201 97 51 10 chr3 126975344 126975655 -100548923 + THE1B LTR MaLR 41 364 0 26 64 0 0 chr3 126975800 126975847 -100548731 + AT_rich Low_complexity Low_complexity 1 47 0 1123 235 122 43 chr3 126975908 126976303 -100548275 + MLT1J2 LTR MaLR 4 429 -21 2529 92 11 6 chr3 126976395 126976742 -100547836 - THE1A LTR MaLR -6 349 1 1924 141 62 43 chr3 126977483 126977851 -100546727 - THE1C LTR MaLR 0 375 1 2615 98 139 12 chr3 126979146 126979477 -100545101 + MER4C LTR ERV1 1 395 -70 263 28 28 0 chr3 126979477 126979513 -100545065 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 2615 98 139 12 chr3 126979513 126979590 -100544988 + MER4C LTR ERV1 395 461 -4 232 346 65 19 chr3 126979865 126979972 -100544606 - L2 LINE L2 -24 3248 3137 1984 194 30 91 chr3 126980003 126980533 -100544045 + MER21B LTR ERV1 16 513 -350 3441 133 74 3 chr3 126980540 126981119 -100543459 + LTR24C LTR ERV1 16 635 0 1370 208 55 27 chr3 126981119 126981412 -100543166 + MER21B LTR ERV1 509 809 -54 479 209 0 0 chr3 126981586 126981672 -100542906 + Tigger4(Zombi) DNA MER2_type 2 87 -2644 * 2399 109 80 32 chr3 126981669 126981781 -100542797 + Tigger4(Zombi) DNA MER2_type 2295 2400 -331 2230 98 0 11 chr3 126981781 126982105 -100542473 + AluY SINE Alu 1 321 0 2399 109 80 32 chr3 126982105 126982402 -100542176 + Tigger4(Zombi) DNA MER2_type 2400 2725 -6 202 363 79 33 chr3 126982462 126982677 -100541901 + L2 LINE L2 2582 2806 -508 264 350 40 0 chr3 126982693 126982793 -100541785 + MER5A DNA MER1_type 86 189 0 321 314 0 58 chr3 126983028 126983184 -100541394 - L2 LINE L2 -11 3302 3156 454 186 10 102 chr3 126983210 126983335 -100541243 + MLT1D LTR MaLR 1 107 -409 234 0 0 0 chr3 126983369 126983395 -100541183 + (TG)n Simple_repeat Simple_repeat 1 26 0 1913 175 69 10 chr3 126983870 126984259 -100540319 + MLT1D LTR MaLR 94 505 0 557 281 28 45 chr3 126984557 126984735 -100539843 - MIR SINE MIR -87 175 1 199 129 0 0 chr3 126985070 126985101 -100539477 + MIR SINE MIR 113 143 -65 317 228 174 34 chr3 126985118 126985267 -100539311 - MER5B DNA MER1_type -5 173 4 763 232 66 25 chr3 126986163 126986404 -100538174 + MIR SINE MIR 11 261 -1 1154 103 103 0 chr3 126986425 126986600 -100537978 + MER107 DNA MER1_type 5 197 0 343 293 242 30 chr3 126986753 126987050 -100537528 - L3 LINE CR1 -140 1437 1078 361 278 28 9 chr3 126988319 126988427 -100536151 - L2 LINE L2 -14 3299 3190 194 406 128 16 chr3 126988714 126989098 -100535480 + L2 LINE L2 2544 2970 -344 23 0 0 0 chr3 126989229 126989252 -100535326 + AT_rich Low_complexity Low_complexity 1 23 0 560 228 198 5 chr3 126989665 126989862 -100534716 + L2 LINE L2 3057 3291 -22 23 0 0 0 chr3 126989864 126989887 -100534691 + AT_rich Low_complexity Low_complexity 1 23 0 238 315 162 58 chr3 126990072 126990313 -100534265 + L3 LINE CR1 989 1254 -323 2409 64 7 0 chr3 126990454 126990749 -100533829 + AluY SINE Alu 1 297 -14 704 163 177 0 chr3 126991490 126991637 -100532941 + MER21B LTR ERV1 327 499 -364 204 267 186 0 chr3 126994526 126994612 -100529966 + L2 LINE L2 3167 3268 -4 595 251 184 0 chr3 126994744 126994951 -100529627 + MIR SINE MIR 18 262 0 957 231 14 27 chr3 126995294 126995515 -100529063 - MIR SINE MIR -32 230 13 709 118 67 0 chr3 126996442 126996561 -100528017 - L1MA3 LINE L1 0 6305 6179 199 377 68 20 chr3 126997209 126997355 -100527223 - L2 LINE L2 -50 3222 3070 314 253 40 0 chr3 126998168 126998243 -100526335 - MIR SINE MIR -67 195 118 432 211 136 20 chr3 127000709 127000856 -100523722 - MER5A DNA MER1_type 0 189 26 211 325 120 34 chr3 127001216 127001333 -100523245 + MIR3 SINE MIR 10 136 -72 1578 163 15 15 chr3 127001759 127002023 -100522555 - AluJb SINE Alu -24 288 25 1264 139 172 57 chr3 127002326 127002431 -100522147 + LTR47A LTR ERVL 5 97 -355 180 0 0 0 chr3 127002431 127002451 -100522127 + (CA)n Simple_repeat Simple_repeat 2 21 0 1264 139 172 57 chr3 127002451 127002747 -100521831 + LTR47A LTR ERVL 97 452 0 266 257 68 0 chr3 127002859 127002933 -100521645 + LTR16C LTR ERVL 401 479 -12 228 326 34 22 chr3 127003562 127003651 -100520927 - MIR SINE MIR -123 139 50 1586 121 121 38 chr3 127004735 127005000 -100519578 - AluSx SINE Alu -25 287 1 2643 99 15 0 chr3 127005084 127005478 -100519100 + L1PB2 LINE L1 5752 6151 0 333 223 182 25 chr3 127005736 127005857 -100518721 + MIR SINE MIR 71 210 -52 1339 132 68 16 chr3 127006313 127006564 -100518014 + MER21A LTR ERV1 1 264 -667 1384 155 141 33 chr3 127006569 127007016 -100517562 + MER21A LTR ERV1 376 925 -6 1913 141 10 26 chr3 127008618 127008923 -100515655 - AluSx SINE Alu -12 300 1 2153 123 10 0 chr3 127009264 127009566 -100515012 + AluSx SINE Alu 1 305 -7 180 309 59 0 chr3 127010038 127010106 -100514472 - L2 LINE L2 -1 3312 3241 2352 90 3 3 chr3 127010658 127010958 -100513620 - AluSp SINE Alu -12 301 2 796 265 109 13 chr3 127012158 127012388 -100512190 - MIR SINE MIR -4 258 7 627 262 99 0 chr3 127012703 127012894 -100511684 + MER20B DNA MER1_type 1 210 -573 237 148 37 19 chr3 127013494 127013548 -100511030 + Tigger5 DNA MER2_type 1 55 -2268 1019 175 134 81 chr3 127015130 127015548 -100509030 - LTR7 LTR ERV1 -9 441 2 576 106 202 0 chr3 127016164 127016268 -100508310 + FLAM_C SINE Alu 14 138 -5 1149 250 66 14 chr3 127016534 127016882 -100507696 + L2 LINE L2 2317 2682 -632 3621 153 41 26 chr3 127016908 127017671 -100506907 + LTR1 LTR ERV1 12 785 0 783 239 160 36 chr3 127017675 127017960 -100506618 + L2 LINE L2 2680 2999 -314 217 273 36 0 chr3 127018540 127018595 -100505983 - MIR SINE MIR 0 262 206 26 30 0 0 chr3 127018768 127018801 -100505777 + AT_rich Low_complexity Low_complexity 1 33 0 1652 156 19 81 chr3 127018903 127019223 -100505355 - AluJo SINE Alu -10 302 3 2059 221 37 49 chr3 127019995 127020564 -100504014 - MER68 LTR ERV1 0 562 1 1744 171 0 11 chr3 127021614 127021938 -100502640 + AluSx SINE Alu 1 321 0 332 208 156 10 chr3 127022684 127022780 -100501798 - L2 LINE L2 -744 2570 2461 1020 185 103 32 chr3 127023117 127023482 -100501096 - MSTC LTR MaLR 0 428 1 404 323 126 7 chr3 127023519 127023788 -100500790 + L1MEd LINE L1 533 833 -5286 193 328 35 0 chr3 127023911 127023969 -100500609 - MIR SINE MIR -186 76 17 630 325 40 24 chr3 127024829 127025127 -100499451 + LTR16A LTR ERVL 139 441 -9 450 53 0 0 chr3 127025176 127025233 -100499345 + (TCCA)n Simple_repeat Simple_repeat 4 60 0 924 144 15 0 chr3 127025258 127025390 -100499188 - AluJo SINE Alu -177 135 2 746 265 86 21 chr3 127025882 127026116 -100498462 + MIR SINE MIR 10 258 -4 23 33 0 0 chr3 127026263 127026293 -100498285 + AT_rich Low_complexity Low_complexity 1 30 0 185 108 27 0 chr3 127026834 127026871 -100497707 + (TG)n Simple_repeat Simple_repeat 1 38 0 318 350 62 19 chr3 127028003 127028163 -100496415 + MIR3 SINE MIR 4 170 -38 183 295 45 62 chr3 127028205 127028317 -100496261 - MIR SINE MIR -136 126 17 1454 142 0 49 chr3 127028326 127028573 -100496005 - AluSx SINE Alu -77 235 1 2177 156 92 17 chr3 127029181 127029650 -100494928 + MLT1D LTR MaLR 3 505 0 1773 181 3 3 chr3 127030663 127030951 -100493627 - AluJo SINE Alu -24 288 1 441 304 0 48 chr3 127031489 127031657 -100492921 - MIR SINE MIR -40 222 63 1638 172 58 0 chr3 127033708 127034033 -100490545 - MER2 DNA MER2_type 0 344 1 2053 136 0 32 chr3 127034905 127035215 -100489363 - AluJb SINE Alu -12 300 1 761 259 76 19 chr3 127035338 127035600 -100488978 - LTR16A LTR ERVL -118 332 56 384 312 0 0 chr3 127035642 127035780 -100488798 - L1MEc LINE L1 -4595 1801 1664 1954 248 115 50 chr3 127035807 127036705 -100487873 - L1MEc LINE L1 -5064 1141 186 21 57 0 0 chr3 127036739 127036774 -100487804 + AT_rich Low_complexity Low_complexity 1 35 0 282 282 14 0 chr3 127037030 127037101 -100487477 + MIR SINE MIR 76 147 -115 180 354 0 15 chr3 127037137 127037202 -100487376 - MIR3 SINE MIR -30 178 115 469 332 64 58 chr3 127037446 127038366 -100486212 - L2 LINE L2 -2 3270 1684 234 277 89 45 chr3 127038992 127039104 -100485474 + L2 LINE L2 3187 3303 -10 2229 99 0 0 chr3 127039330 127039624 -100484954 - AluSc SINE Alu -15 294 1 304 302 113 68 chr3 127039705 127039970 -100484608 + L2 LINE L2 1741 2017 -1297 1984 124 118 15 chr3 127039970 127040300 -100484278 - THE1B LTR MaLR 0 364 1 11785 88 2 1 chr3 127040300 127041878 -100482700 - THE1B-int LTR MaLR 0 1580 1 2158 122 76 15 chr3 127041878 127042221 -100482357 - THE1B LTR MaLR 0 364 1 389 310 24 59 chr3 127043241 127043496 -100481082 - L1M4 LINE L1 -802 5344 5099 404 224 47 37 chr3 127043519 127043626 -100480952 - MER81 DNA DNA -1 113 6 267 308 55 20 chr3 127043665 127043811 -100480767 - L1M4 LINE L1 -1089 5057 4907 182 362 106 11 chr3 127043865 127043959 -100480619 - MIR SINE MIR -102 160 58 338 277 50 21 chr3 127044475 127044616 -100479962 - L1ME3A LINE L1 -208 5962 5818 2588 239 55 36 chr3 127046462 127047751 -100476827 - L1ME1 LINE L1 -5 6161 4848 1763 277 34 36 chr3 127047766 127048348 -100476230 + L1M3e LINE L1 466 1046 -6443 * 3049 248 33 48 chr3 127048329 127049432 -100475146 + L1M3e LINE L1 1885 2970 -4595 1254 77 0 0 chr3 127049440 127049595 -100474983 + AluSg/x SINE Alu 144 298 -14 1686 240 5 5 chr3 127049595 127049962 -100474616 + L1M3e LINE L1 3792 4158 -3407 3360 184 74 17 chr3 127049971 127050751 -100473827 - MER21B LTR ERV1 -7 924 1 7433 174 36 41 chr3 127050753 127052292 -100472286 + L1M3e LINE L1 4156 5701 -1864 189 0 0 0 chr3 127052292 127052313 -100472265 + (TTTA)n Simple_repeat Simple_repeat 3 23 0 3500 31 0 0 chr3 127052313 127052729 -100471849 - L1PA3 LINE L1 -7 6148 5733 7433 174 36 41 chr3 127052729 127052903 -100471675 + L1M3e LINE L1 5699 5862 -1703 1195 246 125 29 chr3 127052899 127053444 -100471134 - L1ME1 LINE L1 -1286 4860 4264 * 287 264 0 0 chr3 127053440 127053512 -100471066 + L1M4 LINE L1 3967 4038 -2108 * 2012 247 103 13 chr3 127053566 127054545 -100470033 - L1ME1 LINE L1 -2452 3694 2622 286 235 44 0 chr3 127054547 127054615 -100469963 - MLT1F1 LTR MaLR 0 567 497 1325 103 11 0 chr3 127054679 127054863 -100469715 - AluSg/x SINE Alu -2 307 122 868 221 21 25 chr3 127054936 127055171 -100469407 - L1MC/D LINE L1 -2287 5521 5288 318 298 24 0 chr3 127055520 127055604 -100468974 + MIR SINE MIR 69 154 -108 225 362 84 91 chr3 127055898 127056326 -100468252 + L2 LINE L2 2831 3255 -17 2026 133 0 40 chr3 127056392 127056739 -100467839 + MER1B DNA MER1_type 1 333 -4 5510 150 57 27 chr3 127057640 127058708 -100465870 - L1MC1 LINE L1 -6 6396 5294 848 141 109 0 chr3 127058858 127059014 -100465564 - MER2 DNA MER2_type -172 173 1 9834 241 28 48 chr3 127059017 127059053 -100465525 - L1MC1 LINE L1 -922 5293 5258 2414 40 3 17 chr3 127059053 127059350 -100465228 - AluY SINE Alu -10 301 9 9834 241 28 48 chr3 127059350 127063479 -100461099 - L1MC1 LINE L1 -957 5258 1246 13489 176 31 26 chr3 127063665 127066775 -100457803 - L1MA5A LINE L1 -6 6933 3840 8318 136 15 6 chr3 127066775 127067727 -100456851 + L1PA11 LINE L1 4013 4954 -1220 2736 103 0 5 chr3 127067727 127068104 -100456474 + THE1C LTR MaLR 1 375 0 8318 136 15 6 chr3 127068104 127069317 -100455261 + L1PA11 LINE L1 4954 6174 0 13489 176 31 26 chr3 127069317 127070269 -100454309 - L1MA5A LINE L1 -3099 3840 2860 2177 118 0 0 chr3 127070269 127070558 -100454020 - AluSq SINE Alu -24 289 1 13489 176 31 26 chr3 127070558 127070690 -100453888 - L1MA5A LINE L1 -4079 2860 2730 7419 190 40 131 chr3 127070702 127073396 -100451182 - L1MA5A LINE L1 -4328 2461 9 225 283 0 0 chr3 127074156 127074209 -100450369 + L2 LINE L2 2887 2939 -333 24 0 0 0 chr3 127074811 127074835 -100449743 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr3 127075342 127075387 -100449191 + AT_rich Low_complexity Low_complexity 1 45 0 24 53 0 0 chr3 127075428 127075466 -100449112 + AT_rich Low_complexity Low_complexity 1 38 0 842 300 87 52 chr3 127076820 127077454 -100447124 - HAL1 LINE L1 -27 2480 1825 796 298 90 63 chr3 127077499 127078401 -100446177 - HAL1 LINE L1 -1564 943 18 304 338 81 7 chr3 127078526 127078662 -100445916 - L3 LINE CR1 -3 1574 1429 2854 179 12 12 chr3 127079328 127079887 -100444691 - L1MC1 LINE L1 -1 6332 5774 26 50 0 0 chr3 127080550 127080590 -100443988 + AT_rich Low_complexity Low_complexity 1 40 0 770 246 53 70 chr3 127081915 127082289 -100442289 - L1MC4a LINE L1 -1933 5875 5508 218 350 79 11 chr3 127083377 127083491 -100441087 + MER5A DNA MER1_type 17 154 -35 195 100 0 0 chr3 127083635 127083665 -100440913 + (TC)n Simple_repeat Simple_repeat 1 30 0 1656 229 19 91 chr3 127083749 127084390 -100440188 - L1ME1 LINE L1 -5 6161 5567 21 57 0 0 chr3 127084395 127084430 -100440148 + AT_rich Low_complexity Low_complexity 1 35 0 15257 74 15 4 chr3 127084463 127084481 -100440097 - L1PA7 LINE L1 -2 6152 6136 1106 8 0 0 chr3 127084481 127084608 -100439970 - L1PA2 LINE L1 0 6155 6029 15257 74 15 4 chr3 127084608 127087521 -100437057 - L1PA7 LINE L1 -18 6136 3193 2197 119 13 0 chr3 127087521 127087824 -100436754 - AluSc SINE Alu -2 307 1 15257 74 15 4 chr3 127087824 127088074 -100436504 - L1PA7 LINE L1 -2961 3193 2947 3290 99 2 15 chr3 127088068 127088543 -100436035 - L1PA7 LINE L1 -4096 2050 1582 * 870 206 106 0 chr3 127088545 127088725 -100435853 - MLT1B LTR MaLR -191 199 1 1900 165 3 32 chr3 127088896 127089272 -100435306 - L1 LINE L1 -1831 4315 3951 28387 32 1 0 chr3 127089292 127093503 -100431075 - L1PA4 LINE L1 -3 6152 1941 4271 218 28 9 chr3 127093502 127094604 -100429974 - L1 LINE L1 -2184 3962 2840 * 3139 178 57 9 chr3 127094604 127094854 -100429724 + L1 LINE L1 4306 4542 -1604 1465 197 23 75 chr3 127094854 127095239 -100429339 + MLT1A1 LTR MaLR 1 365 0 3139 178 57 9 chr3 127095239 127095650 -100428928 + L1 LINE L1 4542 4999 -1147 258 319 21 11 chr3 127096397 127096491 -100428087 + MIR SINE MIR 86 180 -82 21 0 0 0 chr3 127097111 127097132 -100427446 + AT_rich Low_complexity Low_complexity 1 21 0 438 314 152 57 chr3 127097158 127097751 -100426827 + HAL1 LINE L1 1 649 -1858 392 314 34 6 chr3 127097838 127098013 -100426565 + HAL1 LINE L1 1722 1901 -606 1318 188 6 117 chr3 127098474 127098798 -100425780 + AluJo SINE Alu 1 288 -14 27 29 0 0 chr3 127098843 127098877 -100425701 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr3 127099275 127099305 -100425273 + AT_rich Low_complexity Low_complexity 1 30 0 684 93 9 9 chr3 127099388 127099491 -100425087 - L1P5 LINE L1 -472 5679 5576 2847 113 2 22 chr3 127099491 127099934 -100424644 + L1PB1 LINE L1 5716 6150 -1 304 171 0 85 chr3 127100015 127100097 -100424481 - MER5A DNA MER1_type -102 87 13 9109 133 28 1 chr3 127100224 127102198 -100422380 + L1PA10 LINE L1 3799 5828 -340 200 186 70 0 chr3 127102198 127102241 -100422337 - MER5A DNA MER1_type -143 46 1 2338 108 0 15 chr3 127102290 127102623 -100421955 + L1P3 LINE L1 14 341 -5534 302 316 71 25 chr3 127102748 127102944 -100421634 - HAL1 LINE L1 -330 2177 1973 5643 110 13 26 chr3 127102964 127103839 -100420739 - L1PA11 LINE L1 -2 6172 5310 345 279 41 27 chr3 127103862 127104009 -100420569 - HAL1 LINE L1 -556 1951 1803 225 0 0 0 chr3 127104130 127104155 -100420423 + (TTTTA)n Simple_repeat Simple_repeat 5 29 0 634 279 119 85 chr3 127104366 127105130 -100419448 - HAL1 LINE L1 -1678 829 40 341 287 19 9 chr3 127105311 127105419 -100419159 - L3 LINE CR1 -40 1537 1429 2815 178 16 13 chr3 127106101 127106658 -100417920 - L1MC1 LINE L1 -1 6332 5774 2008 131 7 3 chr3 127107312 127107617 -100416961 - AluSx SINE Alu -5 307 2 23 54 0 0 chr3 127107626 127107663 -100416915 + AT_rich Low_complexity Low_complexity 1 37 0 276 130 0 0 chr3 127108881 127108927 -100415651 + (TCTA)n Simple_repeat Simple_repeat 4 49 0 21 0 0 0 chr3 127109024 127109045 -100415533 + AT_rich Low_complexity Low_complexity 1 21 0 489 281 63 20 chr3 127109054 127109307 -100415271 - L1MC4a LINE L1 -1927 5881 5618 24 0 0 0 chr3 127109556 127109580 -100414998 + AT_rich Low_complexity Low_complexity 1 24 0 1121 128 23 0 chr3 127109581 127109753 -100414825 + L1 LINE L1 22 197 -7368 * 1155 156 5 10 chr3 127109743 127109942 -100414636 - L1 LINE L1 -1178 6387 6190 1963 155 14 57 chr3 127109947 127110386 -100414192 + L1 LINE L1 5752 6171 -1394 * 2731 134 7 5 chr3 127110382 127110792 -100413786 - L1 LINE L1 -6297 1268 858 1715 227 72 11 chr3 127110789 127111346 -100413232 - L1ME1 LINE L1 -296 5939 5323 * 4174 226 48 28 chr3 127111347 127112137 -100412441 - L1ME1 LINE L1 -944 5271 4445 2026 133 7 0 chr3 127112137 127112430 -100412148 - AluSx SINE Alu -15 297 3 4174 226 48 28 chr3 127112430 127112923 -100411655 - L1ME1 LINE L1 -1770 4445 3963 476 211 39 22 chr3 127112960 127113140 -100411438 - L1ME1 LINE L1 -5219 1177 995 436 269 8 0 chr3 127113147 127113277 -100411301 - L1ME1 LINE L1 -5453 943 813 736 199 34 6 chr3 127113282 127113458 -100411120 - L1MB4 LINE L1 -2 6178 5998 1360 171 36 43 chr3 127113512 127113793 -100410785 - L1MA9 LINE L1 -421 5891 5613 2450 127 21 7 chr3 127113794 127114220 -100410358 + L1MA9 LINE L1 5881 6312 0 239 358 0 0 chr3 127114349 127114416 -100410162 - L3 LINE CR1 -1 1576 1510 24 53 0 0 chr3 127114700 127114738 -100409840 + AT_rich Low_complexity Low_complexity 1 38 0 821 260 0 0 chr3 127114817 127115017 -100409561 + Charlie1 DNA MER1_type 46 245 -2516 282 217 14 14 chr3 127115020 127115089 -100409489 + Charlie1 DNA MER1_type 2693 2761 0 1561 233 69 27 chr3 127115130 127115654 -100408924 + L1PBa LINE L1 6 551 -6312 2153 131 0 3 chr3 127115678 127116021 -100408557 + L1PB1 LINE L1 5810 6151 0 21 0 0 0 chr3 127116118 127116139 -100408439 + AT_rich Low_complexity Low_complexity 1 21 0 302 190 0 0 chr3 127116411 127116470 -100408108 + MLT1B LTR MaLR 307 390 0 488 227 168 31 chr3 127116787 127116941 -100407637 - HAL1b LINE L1 -7 1341 1210 1596 61 0 15 chr3 127116941 127117138 -100407440 + AluY SINE Alu 110 303 -8 488 227 168 31 chr3 127117138 127117274 -100407304 - HAL1b LINE L1 -138 1210 1011 1283 172 0 0 chr3 127117274 127117495 -100407083 + L1MC1 LINE L1 6104 6324 -9 2219 161 44 30 chr3 127117498 127117926 -100406652 + Tigger2a DNA MER2_type 1 434 0 752 249 30 43 chr3 127118095 127118396 -100406182 - HAL1b LINE L1 -342 1006 710 14698 237 33 18 chr3 127118782 127119144 -100405434 + L1PA15 LINE L1 1 356 -6460 2821 118 80 4 chr3 127119144 127119619 -100404959 - MER9 LTR ERVK 0 511 1 14698 237 33 18 chr3 127119619 127122467 -100402111 + L1PA15 LINE L1 356 3161 -3655 2141 137 3 0 chr3 127122467 127122773 -100401805 + AluSx SINE Alu 1 307 -5 14698 237 33 18 chr3 127122773 127124812 -100399766 + L1PA15 LINE L1 3161 5834 -982 291 28 0 0 chr3 127124812 127124848 -100399730 + (CA)n Simple_repeat Simple_repeat 1 36 0 14698 237 33 18 chr3 127124848 127125846 -100398732 + L1PA15 LINE L1 5834 6816 0 389 286 24 36 chr3 127126512 127126680 -100397898 + L1MB5 LINE L1 14 179 -6363 7221 43 4 4 chr3 127126693 127127592 -100396986 - L1PA7 LINE L1 -2 6152 5254 5581 92 4 15 chr3 127127605 127128420 -100396158 + L1PA7 LINE L1 4434 5239 -907 5479 246 71 26 chr3 127128462 127128860 -100395718 + L1MB5 LINE L1 1205 1584 -5060 2255 103 10 16 chr3 127128860 127129171 -100395407 + AluSg SINE Alu 1 309 -1 5479 246 71 26 chr3 127129171 127130458 -100394120 + L1MB5 LINE L1 1584 2812 -3832 1944 134 40 3 chr3 127130458 127130756 -100393822 - AluSx SINE Alu -3 309 1 5479 246 71 26 chr3 127130756 127132707 -100391871 + L1MB5 LINE L1 2812 5203 -1441 1008 207 60 4 chr3 127132730 127132962 -100391616 + L1MA3 LINE L1 1 245 -6964 4305 220 47 63 chr3 127132984 127134136 -100390442 + L1MA3 LINE L1 1039 2171 -5038 1184 171 13 1 chr3 127134136 127134512 -100390066 + MSTB LTR MaLR 10 425 -1 11483 179 64 11 chr3 127134513 127135490 -100389088 + L1MA3 LINE L1 2161 3084 -4283 2833 10 0 0 chr3 127135490 127135797 -100388781 + AluYa5 SINE Alu 1 307 -4 11483 179 64 11 chr3 127135797 127139709 -100384869 + L1MA3 LINE L1 3084 7365 -2 10259 170 23 21 chr3 127139777 127142246 -100382332 + L1MA4A LINE L1 3029 5503 -800 2366 107 0 0 chr3 127142246 127142544 -100382034 - AluSx SINE Alu -14 298 1 10259 170 23 21 chr3 127142544 127143346 -100381232 + L1MA4A LINE L1 5503 6302 -1 3517 191 53 48 chr3 127143335 127143806 -100380772 + L1MB5 LINE L1 5188 5655 -1017 * 2494 154 12 21 chr3 127143806 127144235 -100380343 - MSTB LTR MaLR -1 425 1 3517 191 53 48 chr3 127144235 127144582 -100379996 + L1MB5 LINE L1 5655 5999 -673 2374 86 3 0 chr3 127144582 127144874 -100379704 - AluSp SINE Alu -16 297 5 3517 191 53 48 chr3 127144874 127145514 -100379064 + L1MB5 LINE L1 5999 6636 -36 958 191 30 12 chr3 127145604 127145772 -100378806 - AluJo SINE Alu -24 288 118 1043 165 0 0 chr3 127145838 127146020 -100378558 - L1MD1 LINE L1 0 6242 6061 2277 173 30 94 chr3 127146020 127146646 -100377932 + LTR60 LTR ERV1 1 586 0 1166 226 6 28 chr3 127146868 127147152 -100377426 - L1M4 LINE L1 -1923 4223 3945 928 237 126 38 chr3 127147152 127147494 -100377084 + MLT1A2 LTR MaLR 1 372 -2 1166 226 6 28 chr3 127147494 127147528 -100377050 - L1M4 LINE L1 -2201 3945 3912 768 182 0 21 chr3 127148099 127148242 -100376336 - MLT1C LTR MaLR 0 467 328 562 176 29 37 chr3 127148260 127148396 -100376182 + MER74C LTR ERVL 1 135 -325 4683 196 52 11 chr3 127148398 127149446 -100375132 + HERVL74 LTR ERVL 3215 4304 -1381 10039 183 17 11 chr3 127149446 127151432 -100373146 - L1PA13 LINE L1 -2 6812 4816 2416 60 0 17 chr3 127151432 127151731 -100372847 - AluY SINE Alu -17 294 1 10039 183 17 11 chr3 127151731 127152619 -100371959 - L1PA13 LINE L1 -1998 4816 3934 11432 216 23 13 chr3 127152621 127156400 -100368178 - L1PA13 LINE L1 -2974 3823 1 2944 251 55 47 chr3 127156413 127157710 -100366868 + HERVL74 LTR ERVL 4293 5685 0 2131 178 43 23 chr3 127157721 127158164 -100366414 + MER74C LTR ERVL 9 460 0 651 157 88 31 chr3 127158166 127158325 -100366253 - MLT1C LTR MaLR -141 326 159 910 139 6 30 chr3 127158367 127158532 -100366046 - MLT1C LTR MaLR -299 168 8 597 232 73 36 chr3 127158547 127158767 -100365811 + L1ME3 LINE L1 5591 5818 -344 525 264 11 88 chr3 127158783 127159044 -100365534 + L1ME3 LINE L1 5914 6154 -8 4977 271 25 31 chr3 127159671 127160145 -100364433 - L1PA13 LINE L1 -2618 4179 3704 2094 99 11 0 chr3 127160145 127160454 -100364124 - AluSq SINE Alu 0 312 1 4977 271 25 31 chr3 127160454 127161991 -100362587 - L1PA13 LINE L1 -3093 3704 2179 3386 64 40 20 chr3 127162066 127162866 -100361712 - MER11A LTR ERVK -222 1044 1 296 346 8 8 chr3 127163221 127163351 -100361227 - L1PA13 LINE L1 -5276 1511 1382 233 386 36 12 chr3 127163400 127163651 -100360927 - L1PA13 LINE L1 -6201 586 330 1938 109 174 11 chr3 127163662 127164030 -100360548 - MSTA LTR MaLR 0 428 1 36 53 0 0 chr3 127164181 127164238 -100360340 + AT_rich Low_complexity Low_complexity 1 57 0 1669 278 41 26 chr3 127164439 127164487 -100360091 - ERVL-C1 LTR ERVL -4459 1026 980 2425 157 24 5 chr3 127164487 127164907 -100359671 + MSTA LTR MaLR 1 428 0 1669 278 41 26 chr3 127164907 127165586 -100358992 - ERVL-C1 LTR ERVL -4505 980 360 619 291 71 28 chr3 127165623 127165946 -100358632 - ERVL-C1 LTR ERVL -5314 340 4 1662 195 14 58 chr3 127165948 127166013 -100358565 - MLT2C1 LTR ERVL 0 397 331 267 103 0 0 chr3 127166013 127166052 -100358526 + (TG)n Simple_repeat Simple_repeat 2 40 0 1662 195 14 58 chr3 127166052 127166401 -100358177 - MLT2C1 LTR ERVL -66 331 1 378 227 0 0 chr3 127166403 127166491 -100358087 + L1 LINE L1 2676 2763 -3383 287 260 32 41 chr3 127166624 127166747 -100357831 - L1MEd LINE L1 -5992 127 6 247 269 54 12 chr3 127167887 127168054 -100356524 + L1 LINE L1 3310 3483 -2663 425 336 91 24 chr3 127168160 127168535 -100356043 + L1 LINE L1 3595 3994 -2152 6386 182 36 34 chr3 127169149 127170532 -100354046 + MER52A LTR ERV1 314 1755 0 332 295 23 16 chr3 127170638 127170767 -100353811 - HERV16 LTR ERVL -816 4948 4819 661 111 0 0 chr3 127170768 127170867 -100353711 + AluSg/x SINE Alu 208 306 -6 324 243 0 10 chr3 127171059 127171162 -100353416 - HERV16 LTR ERVL -1713 3941 3840 2295 318 77 17 chr3 127171201 127173008 -100351570 - HERV16 LTR ERVL -1970 3794 1841 1403 221 43 54 chr3 127173011 127173216 -100351362 + Charlie1a DNA MER1_type 1 207 -2554 1672 241 102 2 chr3 127173216 127173639 -100350939 - MLT1C LTR MaLR 0 467 3 1403 221 43 54 chr3 127173639 127173894 -100350684 + Charlie1a DNA MER1_type 207 456 -999 180 0 0 0 chr3 127174580 127174600 -100349978 + (A)n Simple_repeat Simple_repeat 1 20 0 233 305 0 0 chr3 127174754 127174813 -100349765 - Charlie1a DNA MER1_type -1396 59 1 216 250 0 0 chr3 127175942 127175986 -100348592 + L2 LINE L2 2896 2939 -333 482 289 95 71 chr3 127178605 127178858 -100345720 + MIR SINE MIR 2 260 -2 22 35 0 0 chr3 127178937 127178966 -100345612 + AT_rich Low_complexity Low_complexity 1 29 0 589 164 143 14 chr3 127179008 127179148 -100345430 - L1MB8 LINE L1 -9 6169 6012 70 48 0 0 chr3 127179636 127179741 -100344837 + AT_rich Low_complexity Low_complexity 1 105 0 2416 60 0 22 chr3 127179826 127180144 -100344434 - AluY SINE Alu 0 311 1 399 320 85 88 chr3 127180365 127181133 -100343445 + L2 LINE L2 1992 2756 -558 18209 70 14 1 chr3 127181404 127183837 -100340741 - HERVL LTR ERVL -523 5131 2667 9562 73 4 3 chr3 127186137 127187420 -100337158 - HERVL LTR ERVL -2975 2679 1396 5396 198 168 5 chr3 127187420 127188928 -100335650 - L1PBa LINE L1 -5105 1758 6 6436 164 18 10 chr3 127188948 127190829 -100333749 + L1PA13 LINE L1 4253 6153 -10 186 43 0 0 chr3 127190829 127190852 -100333726 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 6436 164 18 10 chr3 127190852 127190864 -100333714 + L1PA13 LINE L1 6153 6163 0 223 239 57 19 chr3 127190966 127191056 -100333522 + MIR SINE MIR 92 147 -61 261 256 146 12 chr3 127192848 127192930 -100331648 - L2 LINE L2 -1 3271 3179 416 320 153 0 chr3 127192985 127193207 -100331371 - MIR SINE MIR -4 258 3 742 278 21 34 chr3 127194567 127194801 -100329777 - MIR SINE MIR -1 261 31 254 370 24 16 chr3 127195663 127195790 -100328788 - MIR3 SINE MIR -23 185 58 217 227 0 0 chr3 127196299 127196343 -100328235 + (TATG)n Simple_repeat Simple_repeat 4 47 0 1851 116 14 22 chr3 127198349 127198360 -100326218 - AluSq SINE Alu -38 275 265 1929 119 7 4 chr3 127198360 127198637 -100325941 - AluSx SINE Alu -2 310 33 1851 116 14 22 chr3 127198637 127198902 -100325676 - AluSq SINE Alu -48 265 1 500 167 12 130 chr3 127199950 127200112 -100324466 + L1 LINE L1 2758 2900 -3246 * 1444 284 38 0 chr3 127200109 127200559 -100324019 + L1ME1 LINE L1 3418 3884 -2262 2993 200 58 79 chr3 127200562 127201025 -100323553 + L1ME1 LINE L1 4915 5386 -780 2461 67 0 6 chr3 127201025 127201337 -100323241 + AluY SINE Alu 1 310 -1 2993 200 58 79 chr3 127201337 127201978 -100322600 + L1ME1 LINE L1 5386 6007 -159 2179 159 22 8 chr3 127201978 127202336 -100322242 + MLT1A1 LTR MaLR 3 365 0 2993 200 58 79 chr3 127202336 127202487 -100322091 + L1ME1 LINE L1 6007 6160 -6 410 298 122 11 chr3 127202621 127202802 -100321776 - MIR SINE MIR -11 251 51 2714 159 2 5 chr3 127203557 127203997 -100320581 + L1PB4 LINE L1 5717 6155 -1 926 270 10 36 chr3 127204802 127205109 -100319469 + L2 LINE L2 2606 2904 -410 703 243 103 5 chr3 127205128 127205313 -100319265 + MIR SINE MIR 34 236 -26 376 293 9 0 chr3 127205320 127205426 -100319152 + L2 LINE L2 2855 2961 -311 23 33 0 0 chr3 127205694 127205724 -100318854 + AT_rich Low_complexity Low_complexity 1 30 0 425 258 101 17 chr3 127207800 127207978 -100316600 + MIR SINE MIR 69 261 -1 481 323 143 60 chr3 127209129 127209730 -100314848 + L2 LINE L2 2608 3255 -17 540 330 47 8 chr3 127209741 127209977 -100314601 + MIR SINE MIR 1 245 -17 752 130 8 2 chr3 127210045 127210286 -100314292 + AluSx SINE Alu 1 299 -11 1412 81 52 19 chr3 127210488 127210698 -100313880 - AluSc SINE Alu -5 304 88 516 235 337 4 chr3 127210734 127210977 -100313601 + MER5C DNA MER1_type 1 324 0 193 348 177 14 chr3 127210977 127211118 -100313460 - MIR3 SINE MIR -26 182 19 2411 63 0 16 chr3 127211936 127212239 -100312339 + AluY SINE Alu 1 298 -13 403 271 40 91 chr3 127213709 127213908 -100310670 - MLT1L LTR MaLR -416 199 11 2711 39 0 0 chr3 127214614 127214925 -100309653 + AluY SINE Alu 1 311 0 928 218 83 0 chr3 127216060 127216253 -100308325 - MER3 DNA MER1_type 0 209 1 3176 132 97 17 chr3 127216282 127216799 -100307779 - LTR64 LTR ERVK 0 558 1 2105 131 3 0 chr3 127216916 127217222 -100307356 - AluSx SINE Alu -5 307 1 188 51 0 77 chr3 127217239 127217278 -100307300 + (A)n Simple_repeat Simple_repeat 1 36 0 185 281 70 0 chr3 127217370 127217427 -100307151 + MIR SINE MIR 103 163 -99 374 266 0 32 chr3 127217448 127217542 -100307036 + L2 LINE L2 3172 3262 -10 403 246 181 0 chr3 127219234 127219372 -100305206 + MIR3 SINE MIR 28 190 -18 2443 82 0 3 chr3 127219778 127220083 -100304495 - AluY SINE Alu -7 304 1 256 331 83 40 chr3 127220419 127220721 -100303857 - L2 LINE L2 -1 3312 2998 2259 121 0 0 chr3 127222747 127223054 -100301524 + AluSx SINE Alu 1 307 -5 389 135 21 21 chr3 127224169 127224265 -100300313 + (TA)n Simple_repeat Simple_repeat 1 96 0 231 207 58 23 chr3 127224276 127224363 -100300215 - L1MC4 LINE L1 -1340 6702 6613 325 327 13 27 chr3 127224741 127224891 -100299687 - MIR SINE MIR -46 216 69 281 289 70 16 chr3 127224929 127225057 -100299521 + MIR SINE MIR 78 212 -50 410 249 174 2 chr3 127225232 127225458 -100299120 - MER5C DNA MER1_type 0 324 1 5427 68 38 1 chr3 127226464 127227131 -100297447 + LTR8 LTR ERV1 1 691 0 2235 87 0 0 chr3 127227879 127228167 -100296411 - AluSc SINE Alu -13 296 9 883 205 101 95 chr3 127228710 127229046 -100295532 + MER46C DNA MER2_type 1 338 0 360 332 158 0 chr3 127229064 127229254 -100295324 + MIR SINE MIR 43 262 0 1991 153 0 3 chr3 127229725 127230038 -100294540 - AluSx SINE Alu 0 312 1 851 223 19 117 chr3 127230273 127230521 -100294057 - LTR37A LTR ERV1 0 426 224 2104 114 0 0 chr3 127230521 127230794 -100293784 + AluSx SINE Alu 1 273 -39 851 223 19 117 chr3 127230794 127230913 -100293665 - LTR37A LTR ERV1 -202 224 95 261 236 0 0 chr3 127230913 127230968 -100293610 + MER34 LTR ERV1 1 55 -487 271 122 20 0 chr3 127230969 127231018 -100293560 + MER39 LTR ERV1 599 648 -59 256 325 0 0 chr3 127231058 127231135 -100293443 + MIR SINE MIR 80 156 -106 2086 186 48 70 chr3 127231275 127231757 -100292821 + MLT1D LTR MaLR 1 471 -34 322 208 10 99 chr3 127231757 127231858 -100292720 + MER39B LTR ERV1 1 92 -561 * 2706 129 8 69 chr3 127231831 127232154 -100292424 + MER39 LTR ERV1 257 543 -164 2178 144 0 3 chr3 127232154 127232467 -100292111 - AluSx SINE Alu 0 312 1 2706 129 8 69 chr3 127232467 127232623 -100291955 + MER39 LTR ERV1 543 707 0 45438 34 2 2 chr3 127233210 127239361 -100285217 - L1PA3 LINE L1 -3 6152 2 632 176 0 0 chr3 127239490 127239592 -100284986 + Tigger2 DNA MER2_type 1 102 -2616 898 163 0 7 chr3 127239600 127239747 -100284831 - MER39 LTR ERV1 -25 682 537 * 3338 152 94 15 chr3 127239743 127240340 -100284238 + Tigger2 DNA MER2_type 101 744 -1974 1626 136 20 0 chr3 127240405 127240656 -100283922 + Tigger2 DNA MER2_type 2451 2706 -12 195 204 0 0 chr3 127240914 127240963 -100283615 + (CATG)n Simple_repeat Simple_repeat 3 51 0 225 143 41 0 chr3 127242740 127242789 -100281789 + GA-rich Low_complexity Low_complexity 2 52 0 22 35 0 0 chr3 127244166 127244195 -100280383 + AT_rich Low_complexity Low_complexity 1 29 0 3767 205 22 6 chr3 127244521 127245376 -100279202 + L1 LINE L1 3139 4007 -2139 43295 36 23 1 chr3 127245382 127251399 -100273179 + L1PA3 LINE L1 3 6155 0 237 309 15 0 chr3 127251466 127251534 -100273044 - L2 LINE L2 -8 3305 3237 368 167 0 30 chr3 127251617 127251683 -100272895 + MER21B LTR ERV1 8 71 -792 6155 207 30 5 chr3 127251686 127253883 -100270695 + L1PA16 LINE L1 3991 6195 0 2358 98 0 0 chr3 127253946 127254243 -100270335 + AluSx SINE Alu 5 301 -11 373 301 58 32 chr3 127254958 127255114 -100269464 - L2 LINE L2 0 3313 3154 180 312 59 89 chr3 127255595 127255832 -100268746 - L2 LINE L2 -359 2955 2726 294 302 47 0 chr3 127257361 127257467 -100267111 - L3 LINE CR1 -112 1465 1355 22 80 0 0 chr3 127257928 127257978 -100266600 + AT_rich Low_complexity Low_complexity 1 50 0 1869 128 31 31 chr3 127257980 127258269 -100266309 + AluSq SINE Alu 2 290 -23 237 262 71 0 chr3 127258278 127258362 -100266216 + L1MC4 LINE L1 6614 6703 -1339 297 167 0 0 chr3 127258363 127258417 -100266161 + (TA)n Simple_repeat Simple_repeat 1 54 0 491 235 26 9 chr3 127259317 127259432 -100265146 - MER94 DNA DNA 0 134 18 2065 240 16 5 chr3 127259574 127260011 -100264567 - MLT1F LTR MaLR -2 540 99 349 250 12 0 chr3 127260153 127260325 -100264253 + (TA)n Simple_repeat Simple_repeat 1 174 0 460 352 106 52 chr3 127260548 127261175 -100263403 - L2 LINE L2 0 3272 2617 717 193 0 0 chr3 127261308 127261417 -100263161 - FRAM SINE Alu -58 118 10 931 161 12 6 chr3 127261556 127261718 -100262860 + L1MB3 LINE L1 5939 6101 -82 2085 110 10 13 chr3 127261718 127262017 -100262561 + AluSx SINE Alu 1 298 -14 225 268 70 0 chr3 127262080 127262151 -100262427 + LTR3b LTR ERVK 290 365 -72 585 249 149 5 chr3 127262603 127262668 -100261910 + L2 LINE L2 2139 2193 -1121 1563 99 45 9 chr3 127262668 127262890 -100261688 + MER30 DNA MER1_type 1 230 0 585 249 149 5 chr3 127262890 127263045 -100261533 + L2 LINE L2 2193 2391 -923 390 359 13 26 chr3 127263045 127263276 -100261302 + L2 LINE L2 2519 2746 -568 375 288 145 76 chr3 127263279 127263672 -100260906 + L2 LINE L2 2892 3311 -2 198 273 143 39 chr3 127264088 127264165 -100260413 + L2 LINE L2 3134 3218 -54 293 163 0 0 chr3 127264904 127264953 -100259625 + MER41E LTR ERV1 1 49 -463 2359 79 3 10 chr3 127264961 127265266 -100259312 + AluY SINE Alu 1 303 -8 789 307 19 52 chr3 127265387 127265810 -100258768 + MER84-int LTR ERV1 2310 2718 -3958 328 191 139 25 chr3 127265868 127266000 -100258578 + MER84-int LTR ERV1 2039 2171 -2783 606 174 20 0 chr3 127266120 127266218 -100258360 + MER41E LTR ERV1 413 512 0 692 289 34 0 chr3 127267879 127268087 -100256491 + MIR SINE MIR 47 261 -1 201 39 0 0 chr3 127268815 127268841 -100255737 + (CA)n Simple_repeat Simple_repeat 2 27 0 231 167 0 0 chr3 127269577 127269619 -100254959 + GA-rich Low_complexity Low_complexity 2 43 0 298 281 0 50 chr3 127272276 127272397 -100252181 + GA-rich Low_complexity Low_complexity 3 117 0 276 355 28 21 chr3 127277453 127277594 -100246984 - MIR3 SINE MIR -64 144 3 216 0 0 0 chr3 127278641 127278665 -100245913 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 202 333 246 0 chr3 127279918 127280044 -100244534 - MIR SINE MIR -6 256 100 24 53 0 0 chr3 127281346 127281384 -100243194 + AT_rich Low_complexity Low_complexity 1 38 0 878 107 0 0 chr3 127281534 127281655 -100242923 - L1MB1 LINE L1 0 6168 6048 355 266 241 2 chr3 127281880 127282009 -100242569 + MIR SINE MIR 21 173 -81 1919 167 0 0 chr3 127283696 127284013 -100240565 + AluSx SINE Alu 2 318 0 1645 279 109 27 chr3 127284693 127285471 -100239107 - L1MC4a LINE L1 -1671 6137 5296 255 354 20 0 chr3 127285531 127285630 -100238948 - MER5B DNA MER1_type -68 110 10 318 379 39 20 chr3 127286485 127286638 -100237940 - L2 LINE L2 -10 3262 3107 450 335 44 11 chr3 127286875 127287057 -100237521 - MER5A DNA MER1_type 0 189 2 1988 124 0 65 chr3 127287565 127287872 -100236706 + AluSx SINE Alu 1 287 -25 28 29 0 0 chr3 127287872 127287907 -100236671 + AT_rich Low_complexity Low_complexity 1 35 0 467 226 9 43 chr3 127288410 127288525 -100236053 + MIR3 SINE MIR 10 120 -88 382 300 229 19 chr3 127288525 127288792 -100235786 - LTR16A LTR ERVL 0 450 128 757 221 98 98 chr3 127288940 127289487 -100235091 - MLT1H LTR MaLR 0 626 1 199 239 109 65 chr3 127289584 127289676 -100234902 + L2 LINE L2 3217 3312 -1 36 40 0 0 chr3 127290038 127290088 -100234490 + AT_rich Low_complexity Low_complexity 1 50 0 2353 62 0 26 chr3 127291996 127292303 -100232275 - AluY SINE Alu -12 299 1 572 298 111 13 chr3 127292408 127292633 -100231945 - MIR SINE MIR -14 248 2 406 147 27 13 chr3 127292928 127293003 -100231575 + MIR3 SINE MIR 124 199 -9 243 170 0 0 chr3 127294070 127294117 -100230461 + T-rich Low_complexity Low_complexity 1 47 0 4207 88 0 0 chr3 127294451 127295005 -100229573 - MER41A LTR ERV1 0 554 1 521 326 39 13 chr3 127295527 127295757 -100228821 - MIR SINE MIR -19 243 8 191 295 13 39 chr3 127295829 127295907 -100228671 - L3 LINE CR1 -2 1575 1500 180 213 0 0 chr3 127296628 127296689 -100227889 + (TA)n Simple_repeat Simple_repeat 1 61 0 751 285 66 12 chr3 127297300 127297542 -100227036 + MIR SINE MIR 6 260 -2 22 0 0 0 chr3 127297655 127297677 -100226901 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr3 127298478 127298499 -100226079 + (A)n Simple_repeat Simple_repeat 1 21 0 317 256 108 27 chr3 127298896 127299037 -100225541 + MIR SINE MIR 6 153 -62 2437 81 0 3 chr3 127299327 127299637 -100224941 + AluSc SINE Alu 1 309 0 1836 103 17 45 chr3 127302758 127303049 -100221529 - AluSx SINE Alu -29 283 1 227 191 0 24 chr3 127303468 127303510 -100221068 - L2 LINE L2 -8 3264 3224 281 284 313 11 chr3 127303759 127303935 -100220643 + L3 LINE CR1 147 375 -1202 801 273 189 26 chr3 127304159 127304540 -100220038 + L3 LINE CR1 404 846 -731 360 288 9 137 chr3 127304744 127304977 -100219601 - MIR3 SINE MIR -1 207 5 224 266 62 0 chr3 127305115 127305179 -100219399 + MIR SINE MIR 86 153 -109 2271 128 34 0 chr3 127306977 127307329 -100217249 - THE1B LTR MaLR 0 364 1 2922 13 0 0 chr3 127307367 127307685 -100216893 - AluYb8 SINE Alu 0 318 1 198 272 55 137 chr3 127307685 127307762 -100216816 + MIR3 SINE MIR 63 124 -84 198 0 0 0 chr3 127307762 127307784 -100216794 + (TAA)n Simple_repeat Simple_repeat 2 23 0 198 272 55 137 chr3 127307784 127307843 -100216735 + MIR3 SINE MIR 124 186 -22 29 60 0 0 chr3 127310078 127310128 -100214450 + AT_rich Low_complexity Low_complexity 1 50 0 2228 120 0 0 chr3 127311202 127311503 -100213075 - AluSx SINE Alu -11 301 1 1991 106 7 4 chr3 127311593 127311868 -100212710 - AluSc SINE Alu -33 276 1 1728 144 36 44 chr3 127311868 127312230 -100212348 - L1MB2 LINE L1 -41 6130 5772 52 41 0 0 chr3 127312497 127312570 -100212008 + AT_rich Low_complexity Low_complexity 1 73 0 215 289 77 19 chr3 127314669 127314773 -100209805 + L2 LINE L2 3185 3294 -19 390 317 111 62 chr3 127314982 127315307 -100209271 + L2 LINE L2 2932 3272 0 290 281 219 24 chr3 127317004 127317168 -100207410 - MIR3 SINE MIR -3 205 10 188 275 0 0 chr3 127319330 127319370 -100205208 - MIR SINE MIR -102 106 67 21 36 0 0 chr3 127319568 127319596 -100204982 + AT_rich Low_complexity Low_complexity 1 28 0 2722 153 52 20 chr3 127320089 127320470 -100204108 + L1PB4 LINE L1 5596 6000 -156 2111 109 37 40 chr3 127320470 127320846 -100203732 - THE1C LTR MaLR 0 375 1 2722 153 52 20 chr3 127320846 127321005 -100203573 + L1PB4 LINE L1 6000 6153 -3 498 298 103 58 chr3 127321140 127321432 -100203146 + L3 LINE CR1 1262 1566 -11 349 367 73 18 chr3 127322438 127322765 -100201813 - L1M4 LINE L1 -2546 3600 3256 2915 149 11 25 chr3 127322811 127323368 -100201210 - L1MB3 LINE L1 -3 6882 6334 1274 149 24 44 chr3 127323370 127323618 -100200960 + L1M3 LINE L1 5328 5570 -613 357 24 0 0 chr3 127323635 127323677 -100200901 + (CA)n Simple_repeat Simple_repeat 2 43 0 6292 191 39 46 chr3 127323677 127324931 -100199647 - L1MB3 LINE L1 -541 6344 5101 1913 152 34 0 chr3 127324931 127325228 -100199350 - AluSx SINE Alu -5 307 1 6292 191 39 46 chr3 127325228 127325905 -100198673 - L1MB3 LINE L1 -1784 5101 4421 5301 254 59 11 chr3 127326252 127328149 -100196429 - L1MB3 LINE L1 -2404 4444 2419 216 0 0 0 chr3 127328149 127328173 -100196405 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 5301 254 59 11 chr3 127328173 127328704 -100195874 - L1MB3 LINE L1 -4429 2419 1915 2581 196 2 53 chr3 127328708 127329259 -100195319 - L1MB3 LINE L1 -5857 993 471 22 56 0 0 chr3 127329330 127329366 -100195212 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr3 127329422 127329451 -100195127 + AT_rich Low_complexity Low_complexity 1 29 0 2046 245 82 19 chr3 127330342 127331016 -100193562 + HsTC2a DNA Tc2 4 719 -25 318 115 0 0 chr3 127331270 127331331 -100193247 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 31 68 0 0 chr3 127332068 127332127 -100192451 + AT_rich Low_complexity Low_complexity 1 59 0 25 83 0 0 chr3 127332147 127332207 -100192371 + AT_rich Low_complexity Low_complexity 1 60 0 387 283 79 13 chr3 127334507 127334659 -100189919 - MIR3 SINE MIR -11 197 36 1752 138 0 50 chr3 127335954 127336251 -100188327 - AluJb SINE Alu -30 282 1 234 246 138 0 chr3 127336535 127336600 -100187978 + MIR3 SINE MIR 98 171 -37 917 174 29 6 chr3 127336979 127337151 -100187427 + AluJb SINE Alu 137 312 0 13724 133 45 26 chr3 127337408 127338688 -100185890 + Tigger1 DNA MER2_type 30 1284 -1134 2049 101 36 0 chr3 127338688 127338965 -100185613 + AluSg SINE Alu 1 287 -23 284 51 68 0 chr3 127338965 127339024 -100185554 + (TA)n Simple_repeat Simple_repeat 1 63 0 13724 133 45 26 chr3 127339024 127340086 -100184492 + Tigger1 DNA MER2_type 1283 2418 0 23 33 0 0 chr3 127340538 127340568 -100184010 + AT_rich Low_complexity Low_complexity 1 30 0 397 0 0 0 chr3 127341842 127341886 -100182692 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 2165 106 3 0 chr3 127341886 127342168 -100182410 - AluSx SINE Alu -29 283 1 263 208 0 129 chr3 127342196 127342297 -100182281 + MIR SINE MIR 104 191 -71 2177 83 14 3 chr3 127342949 127343238 -100181340 + AluSg SINE Alu 2 293 -17 2454 81 0 3 chr3 127346346 127346656 -100177922 - AluSc SINE Alu 0 309 1 317 256 108 27 chr3 127346946 127347087 -100177491 - MIR SINE MIR -62 146 6 189 0 0 0 chr3 127347484 127347505 -100177073 + (T)n Simple_repeat Simple_repeat 1 21 0 22 0 0 0 chr3 127348306 127348328 -100176250 + AT_rich Low_complexity Low_complexity 1 22 0 747 285 66 12 chr3 127348441 127348683 -100175895 - MIR SINE MIR -2 260 6 344 325 25 25 chr3 127350305 127350462 -100174116 + MER5A DNA MER1_type 3 159 -30 22 35 0 0 chr3 127350861 127350890 -100173688 + AT_rich Low_complexity Low_complexity 1 29 0 1048 240 37 10 chr3 127351276 127351572 -100173006 - LTR16C LTR ERVL -12 479 176 2503 137 47 33 chr3 127351573 127351970 -100172608 + LTR22A LTR ERVK 1 406 -52 2360 101 0 3 chr3 127351970 127352278 -100172300 - AluSc SINE Alu -2 307 1 2503 137 47 33 chr3 127352278 127352332 -100172246 + LTR22A LTR ERVK 406 458 0 2337 117 0 0 chr3 127352935 127353244 -100171334 - AluSc SINE Alu 0 309 1 1162 164 51 99 chr3 127353432 127353864 -100170714 + Charlie1 DNA MER1_type 2351 2761 0 2516 128 33 21 chr3 127353919 127354348 -100170230 - MER57B LTR ERV1 0 434 1 296 299 47 0 chr3 127354371 127354478 -100170100 - MERVL LTR ERVL -640 4845 4734 2010 138 7 0 chr3 127354531 127354828 -100169750 + AluSx SINE Alu 1 299 -13 4351 233 63 32 chr3 127355056 127355296 -100169282 - L1ME1 LINE L1 -5 6161 5930 1944 151 36 14 chr3 127355296 127355661 -100168917 + MER93b LTR ERV1 1 373 0 4351 233 63 32 chr3 127355661 127355738 -100168840 - L1ME1 LINE L1 -236 5930 5857 2587 115 5 3 chr3 127355738 127356112 -100168466 + THE1C LTR MaLR 1 375 0 4351 233 63 32 chr3 127356112 127356182 -100168396 - L1ME1 LINE L1 -309 5857 5791 1827 174 42 0 chr3 127356182 127356515 -100168063 + MER7A DNA MER2_type 2 346 0 4351 233 63 32 chr3 127356515 127358466 -100166112 - L1ME1 LINE L1 -375 5791 3739 575 204 217 0 chr3 127358464 127358699 -100165879 - L1ME1 LINE L1 -2989 3157 2872 * 366 239 211 0 chr3 127358796 127358905 -100165673 - MIR SINE MIR -108 154 23 222 288 17 0 chr3 127359780 127359839 -100164739 - MIR SINE MIR -115 147 88 1587 214 42 40 chr3 127360032 127360486 -100164092 - MLT1C LTR MaLR 0 467 13 225 0 0 0 chr3 127361096 127361121 -100163457 + (A)n Simple_repeat Simple_repeat 1 25 0 207 167 0 0 chr3 127361723 127361765 -100162813 + GA-rich Low_complexity Low_complexity 2 43 0 2381 92 0 3 chr3 127363402 127363708 -100160870 + AluY SINE Alu 1 305 -6 276 181 24 24 chr3 127363869 127363952 -100160626 - MER97a DNA MER1_type? -27 867 785 220 216 0 0 chr3 127363959 127364010 -100160568 + A-rich Low_complexity Low_complexity 1 51 0 232 283 33 76 chr3 127364276 127364311 -100160267 + MIR SINE MIR 21 56 -152 1986 145 0 0 chr3 127364311 127364645 -100159933 - AluSx SINE Alu 0 334 1 232 283 33 76 chr3 127364645 127364700 -100159878 + MIR SINE MIR 56 108 -100 273 280 181 6 chr3 127365567 127365749 -100158829 - MER112 DNA MER1_type -41 219 6 1987 169 34 0 chr3 127365754 127366104 -100158474 + MLT1A1 LTR MaLR 3 364 -1 21 57 0 0 chr3 127367297 127367332 -100157246 + AT_rich Low_complexity Low_complexity 1 35 0 641 189 91 11 chr3 127367374 127367549 -100157029 + LTR54B LTR ERV1 308 496 -2 2097 107 24 3 chr3 127367640 127367929 -100156649 + AluSc SINE Alu 1 295 -14 486 263 56 35 chr3 127368180 127368412 -100156166 + L1ME3A LINE L1 5078 5314 -832 2506 137 35 21 chr3 127368418 127368842 -100155736 - Tigger2a DNA MER2_type -4 430 1 1303 240 157 29 chr3 127368958 127369306 -100155272 + L1ME3A LINE L1 5500 5802 -368 4696 72 83 2 chr3 127369306 127369945 -100154633 + LTR8 LTR ERV1 1 691 0 1303 240 157 29 chr3 127369945 127370184 -100154394 + L1ME3A LINE L1 5802 6162 -8 2194 115 7 0 chr3 127370197 127370492 -100154086 + AluSq SINE Alu 3 299 -14 377 264 82 57 chr3 127370780 127370939 -100153639 - MIR SINE MIR -91 171 9 769 167 43 78 chr3 127370963 127371220 -100153358 - Charlie5 DNA MER1_type -31 2581 2334 575 177 24 8 chr3 127371340 127371464 -100153114 + MER34C LTR ERV1 5 130 -455 335 190 115 11 chr3 127371463 127371550 -100153028 - MER33 DNA MER1_type -259 65 1 * 2333 98 0 6 chr3 127372537 127372852 -100151726 + AluSq SINE Alu 1 313 0 24 0 0 0 chr3 127373039 127373063 -100151515 + AT_rich Low_complexity Low_complexity 1 24 0 2176 123 7 0 chr3 127373179 127373487 -100151091 - AluSg SINE Alu 0 310 1 182 184 149 69 chr3 127373600 127373687 -100150891 + MIR SINE MIR 79 172 -90 427 293 71 0 chr3 127374240 127374380 -100150198 + MIR SINE MIR 8 157 -105 304 341 17 17 chr3 127374471 127374644 -100149934 - L1ME LINE L1 -454 5708 5536 2022 111 30 13 chr3 127376131 127376429 -100148149 + AluSq SINE Alu 1 303 -10 584 314 61 72 chr3 127377245 127377688 -100146890 - L2 LINE L2 0 3272 2835 312 300 91 27 chr3 127377754 127377864 -100146714 + L2 LINE L2 3136 3252 -20 13510 66 20 3 chr3 127378518 127380349 -100144229 + HERVL-A1 LTR ERVL 3792 5654 0 1740 81 31 8 chr3 127380349 127380607 -100143971 + MLT2A1 LTR ERVL 1 264 -180 216 158 0 0 chr3 127380616 127380654 -100143924 + (TATG)n Simple_repeat Simple_repeat 2 39 0 13265 200 14 16 chr3 127380693 127385612 -100138966 + L1PB1 LINE L1 1877 6853 0 1595 134 0 0 chr3 127385618 127385865 -100138713 - L1P LINE L1 -1880 4266 4020 * 15253 191 78 7 chr3 127385863 127390235 -100134343 - L1P4 LINE L1 -376 6488 1809 543 155 207 0 chr3 127390245 127390361 -100134217 + MER20 DNA MER1_type 80 219 0 230 152 0 0 chr3 127390505 127390551 -100134027 - L1MC4 LINE L1 -1349 6693 6648 241 276 17 0 chr3 127390690 127390748 -100133830 + (CATATA)n Simple_repeat Simple_repeat 5 63 0 366 283 20 10 chr3 127390837 127390936 -100133642 + MER5B DNA MER1_type 63 162 -16 351 263 111 0 chr3 127392226 127392325 -100132253 - L2 LINE L2 -4 3309 3200 867 215 10 24 chr3 127392325 127392393 -100132185 - MER3 DNA MER1_type -3 206 139 1679 147 98 4 chr3 127392393 127392649 -100131929 + AluSx SINE Alu 1 305 -7 194 29 59 0 chr3 127392649 127392683 -100131895 + (CAA)n Simple_repeat Simple_repeat 1 180 0 867 215 10 24 chr3 127392692 127392832 -100131746 - MER3 DNA MER1_type -70 139 1 2508 130 61 12 chr3 127392847 127393255 -100131323 + MSTA LTR MaLR 1 428 0 2157 129 112 25 chr3 127393321 127393715 -100130863 + MSTA LTR MaLR 1 428 0 2446 62 10 0 chr3 127393767 127394075 -100130503 - AluY SINE Alu 0 311 1 206 74 0 0 chr3 127394374 127394401 -100130177 - MIR SINE MIR -35 227 201 921 194 0 12 chr3 127394414 127394574 -100130004 + FRAM SINE Alu 1 158 -18 411 202 85 0 chr3 127394580 127394674 -100129904 - MIR SINE MIR -70 192 91 431 278 64 34 chr3 127394716 127394946 -100129632 - MLT1J2 LTR MaLR -23 419 191 496 192 58 75 chr3 127394951 127394972 -100129606 - MER20 DNA MER1_type -5 214 194 2446 181 39 47 chr3 127394972 127395487 -100129091 + MLT2B2 LTR ERVL 5 515 0 496 192 58 75 chr3 127395487 127395585 -100128993 - MER20 DNA MER1_type -25 194 97 468 271 41 35 chr3 127395651 127395828 -100128750 - MLT1J1 LTR MaLR -252 198 19 2294 111 0 3 chr3 127395938 127396244 -100128334 - AluSx SINE Alu -7 305 1 1927 137 11 0 chr3 127396869 127397146 -100127432 + AluSx SINE Alu 1 280 -32 216 0 0 0 chr3 127397149 127397173 -100127405 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 25 31 0 0 chr3 127397543 127397575 -100127003 + AT_rich Low_complexity Low_complexity 1 32 0 226 240 100 0 chr3 127397702 127397752 -100126826 + Tigger5 DNA MER2_type 1 55 -2268 297 213 80 13 chr3 127397772 127397847 -100126731 + Tigger5 DNA MER2_type 2244 2323 0 205 259 0 17 chr3 127398203 127398261 -100126317 + GA-rich Low_complexity Low_complexity 2 58 0 509 306 53 29 chr3 127399071 127399316 -100125262 + MIR SINE MIR 5 255 -7 199 336 30 30 chr3 127399747 127399878 -100124700 - L3 LINE CR1 -830 747 617 252 231 0 0 chr3 127399965 127400043 -100124535 + CT-rich Low_complexity Low_complexity 2 79 0 266 368 63 22 chr3 127400254 127400569 -100124009 - L1MC/D LINE L1 -477 5882 5555 195 204 0 0 chr3 127402212 127402261 -100122317 + (CATG)n Simple_repeat Simple_repeat 2 50 0 1146 262 40 76 chr3 127403194 127403667 -100120911 + LTR33A LTR ERVL 67 522 -1 194 139 47 0 chr3 127403864 127403907 -100120671 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 323 226 129 0 chr3 127404413 127404506 -100120072 - L2 LINE L2 0 3313 3209 2020 142 67 6 chr3 127404848 127405449 -100119129 + MER39 LTR ERV1 5 702 -5 1948 132 1 29 chr3 127405521 127406077 -100118501 + MER4A LTR ERV1 1 664 0 236 200 15 0 chr3 127406163 127406228 -100118350 + GA-rich Low_complexity Low_complexity 1 66 0 1164 192 50 120 chr3 127406306 127406790 -100117788 - LTR7 LTR ERV1 0 450 1 2492 67 0 0 chr3 127407117 127407414 -100117164 - AluY SINE Alu -14 297 1 378 134 73 0 chr3 127407916 127407998 -100116580 - AluSg/x SINE Alu -2 298 211 2107 227 35 48 chr3 127409009 127409578 -100115000 + MER68 LTR ERV1 1 562 0 2337 112 0 0 chr3 127410356 127410660 -100113918 + AluSx SINE Alu 3 306 -6 434 256 8 16 chr3 127410761 127410890 -100113688 + L2 LINE L2 3186 3313 0 344 268 0 21 chr3 127411465 127411562 -100113016 + LTR67 LTR ERVL 459 553 -4 217 314 105 19 chr3 127411968 127412073 -100112505 + MER5B DNA MER1_type 3 116 -62 2010 134 0 55 chr3 127412075 127412404 -100112174 - AluSx SINE Alu -1 311 1 256 182 234 26 chr3 127412409 127412486 -100112092 - L1MC4 LINE L1 -1 8041 7949 238 324 10 0 chr3 127412512 127412614 -100111964 + (TA)n Simple_repeat Simple_repeat 1 103 0 3222 261 150 18 chr3 127412658 127413901 -100110677 - L1MC4 LINE L1 -174 7868 6461 1925 181 5 24 chr3 127414348 127414719 -100109859 - MLT1A1 LTR MaLR 0 365 2 21 0 0 0 chr3 127415781 127415802 -100108776 + AT_rich Low_complexity Low_complexity 1 21 0 2220 101 0 23 chr3 127416131 127416439 -100108139 + AluSq SINE Alu 1 301 -12 315 278 56 0 chr3 127416553 127416643 -100107935 - MER63 DNA MER1_type -2 1059 965 * 447 220 156 0 chr3 127416635 127416744 -100107834 - MER63 DNA MER1_type -310 752 1 4981 222 15 19 chr3 127416795 127417472 -100107106 - L1P LINE L1 -1778 4368 3695 198 0 0 0 chr3 127417472 127417494 -100107084 + (TTG)n Simple_repeat Simple_repeat 3 24 0 4981 222 15 19 chr3 127417494 127417987 -100106591 - L1P LINE L1 -2451 3695 3202 * 6764 167 26 6 chr3 127417982 127418632 -100105946 + L1PA16 LINE L1 3886 4522 -1644 1949 163 73 34 chr3 127418632 127419044 -100105534 - MSTA LTR MaLR 0 428 1 6764 167 26 6 chr3 127419044 127420632 -100103946 + L1PA16 LINE L1 4522 6166 0 483 276 45 13 chr3 127420905 127421061 -100103517 - MIR3 SINE MIR -4 204 44 357 277 24 0 chr3 127422277 127422360 -100102218 + MER81 DNA DNA 2 86 -28 258 341 21 0 chr3 127422378 127422499 -100102079 - MIR SINE MIR -61 147 21 468 242 57 0 chr3 127422747 127422871 -100101707 - MER94 DNA DNA 0 134 4 235 296 14 0 chr3 127423012 127423083 -100101495 - MER63 DNA MER1_type 0 1062 991 524 137 10 0 chr3 127423188 127423290 -100101288 + CT-rich Low_complexity Low_complexity 1 103 0 2290 104 0 3 chr3 127423383 127423681 -100100897 - AluSg SINE Alu -12 298 2 557 122 0 0 chr3 127424329 127424411 -100100167 + AluS SINE Alu 223 304 -5 315 302 101 13 chr3 127424463 127424612 -100099966 + ERVL LTR ERVL 5 166 -5598 1990 115 20 7 chr3 127424678 127424974 -100099604 - L1PB1 LINE L1 0 6151 5852 2411 94 3 0 chr3 127425360 127425668 -100098910 + AluSx SINE Alu 1 309 -3 9051 20 1 291 chr3 127425846 127427797 -100096781 + SVA Other Other 1 1386 0 1782 169 5 86 chr3 127428056 127428452 -100096126 - MLT1A1 LTR MaLR 0 365 2 2339 94 3 3 chr3 127428462 127428760 -100095818 - AluSx SINE Alu -14 298 1 236 375 21 0 chr3 127428765 127428861 -100095717 - L2 LINE L2 -16 3297 3200 307 286 55 0 chr3 127428949 127429040 -100095538 + MIR SINE MIR 31 126 -136 576 234 135 31 chr3 127429141 127429363 -100095215 - MLT1J2 LTR MaLR -205 245 1 315 302 200 44 chr3 127429481 127429748 -100094830 - L2 LINE L2 -849 2465 2241 210 37 0 0 chr3 127429748 127429775 -100094803 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 315 302 200 44 chr3 127429775 127429937 -100094641 - L2 LINE L2 -1073 2241 1969 706 296 77 15 chr3 127429997 127430438 -100094140 + LTR33 LTR ERVL 40 520 -3 286 320 69 50 chr3 127430576 127430938 -100093640 - L2 LINE L2 -1550 1764 1396 260 356 119 21 chr3 127430949 127431328 -100093250 - L2 LINE L2 -2173 1141 726 262 269 109 8 chr3 127432709 127432828 -100091750 - L1ME4a LINE L1 -12 6109 5979 2364 124 51 0 chr3 127432928 127433282 -100091296 + MER83C LTR ERV1 1 372 -1 537 252 181 42 chr3 127433327 127433374 -100091204 + MLT1J2 LTR MaLR 1 40 -410 2195 125 10 10 chr3 127433374 127433686 -100090892 - AluSx SINE Alu 0 312 1 537 252 181 42 chr3 127433686 127433905 -100090673 + MLT1J2 LTR MaLR 40 288 -162 2313 100 0 3 chr3 127434069 127434370 -100090208 - AluSg SINE Alu -10 300 1 832 233 91 106 chr3 127434391 127435036 -100089542 + MLT1H LTR MaLR 1 590 0 1701 222 34 29 chr3 127435043 127435489 -100089089 - MER39 LTR ERV1 0 707 260 1121 345 72 31 chr3 127435609 127436377 -100088201 - ERVL LTR ERVL -3925 1839 1041 358 332 103 14 chr3 127436642 127436865 -100087713 - ERVL LTR ERVL -5167 597 355 722 228 246 26 chr3 127437111 127437173 -100087405 - LTR50 LTR ERVL -2 793 746 2251 98 3 7 chr3 127437173 127437468 -100087110 - AluSq SINE Alu -19 294 1 722 228 246 26 chr3 127437468 127437981 -100086597 - LTR50 LTR ERVL -49 746 9 1888 128 25 0 chr3 127438092 127438373 -100086205 + AluSx SINE Alu 2 289 -23 206 31 0 31 chr3 127438376 127438408 -100086170 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 24 0 0 0 chr3 127438448 127438472 -100086106 + AT_rich Low_complexity Low_complexity 1 24 0 219 218 36 0 chr3 127439460 127439515 -100085063 + L2 LINE L2 3214 3270 -2 1636 199 49 52 chr3 127439623 127440003 -100084575 + MLT2C1 LTR ERVL 1 437 -27 8343 49 9 0 chr3 127440003 127440960 -100083618 + LTR5 LTR ERVK 1 966 -3 1636 199 49 52 chr3 127440960 127440986 -100083592 + MLT2C1 LTR ERVL 437 462 -2 2207 131 129 5 chr3 127441312 127441693 -100082885 - MSTA LTR MaLR 0 428 1 7819 23 0 4 chr3 127441850 127442862 -100081716 + L1PA3 LINE L1 5145 6152 -3 480 17 0 0 chr3 127442806 127442865 -100081713 + L1PA3 LINE L1 6097 6155 0 183 80 0 0 chr3 127443709 127443734 -100080844 + (A)n Simple_repeat Simple_repeat 1 25 0 283 294 174 9 chr3 127444549 127444658 -100079920 + L2 LINE L2 3181 3307 -6 733 159 204 0 chr3 127444912 127445069 -100079509 + MER53 DNA DNA 1 189 0 1256 160 9 36 chr3 127446183 127446408 -100078170 - MER20 DNA MER1_type 0 219 1 210 37 0 0 chr3 127446831 127446858 -100077720 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 225 0 0 0 chr3 127446857 127446882 -100077696 + (TG)n Simple_repeat Simple_repeat 1 25 0 215 378 18 9 chr3 127447052 127447163 -100077415 + L2 LINE L2 2891 3002 -270 257 95 63 0 chr3 127447193 127447256 -100077322 + (CA)n Simple_repeat Simple_repeat 2 68 0 246 266 78 78 chr3 127447337 127447465 -100077113 + L2 LINE L2 3178 3305 -8 251 323 90 118 chr3 127448789 127449077 -100075501 + L2 LINE L2 2992 3271 -1 305 377 63 6 chr3 127449671 127449846 -100074732 - MIR SINE MIR -74 188 4 764 219 92 6 chr3 127449897 127450061 -100074517 + MER45A DNA AcHobo 1 178 0 470 247 43 25 chr3 127450061 127450218 -100074360 - MIR3 SINE MIR -5 203 44 2215 122 3 0 chr3 127450791 127451095 -100073483 + AluSx SINE Alu 1 305 -7 339 214 22 22 chr3 127451273 127451362 -100073216 + AluSg SINE Alu 3 91 -209 486 216 45 22 chr3 127451463 127451597 -100072981 - AluYb8 SINE Alu -180 138 2 441 215 66 0 chr3 127451600 127451721 -100072857 + L1M4 LINE L1 2531 2659 -3487 1709 184 0 10 chr3 127451724 127452023 -100072555 + AluJo SINE Alu 1 296 -16 215 334 57 0 chr3 127452173 127452279 -100072299 + MIR SINE MIR 38 154 -61 2384 92 0 7 chr3 127452803 127453109 -100071469 - AluSx SINE Alu -8 304 1 1018 105 0 14 chr3 127453187 127453330 -100071248 - AluSq/x SINE Alu -172 141 1 243 270 10 20 chr3 127453604 127453704 -100070874 + CT-rich Low_complexity Low_complexity 2 100 0 270 0 0 0 chr3 127454647 127454677 -100069901 + (CA)n Simple_repeat Simple_repeat 2 31 0 227 177 76 51 chr3 127455306 127455377 -100069201 - MER5A DNA MER1_type -37 152 77 378 0 0 0 chr3 127455377 127455419 -100069159 + (TG)n Simple_repeat Simple_repeat 2 43 0 368 223 92 46 chr3 127455739 127455869 -100068709 - MIR SINE MIR -112 150 15 187 306 124 25 chr3 127456408 127456529 -100068049 + L2 LINE L2 3129 3261 -11 1829 40 53 9 chr3 127456608 127456835 -100067743 - AluY SINE Alu -11 300 64 201 280 75 28 chr3 127457557 127457664 -100066914 + L2 LINE L2 2273 2384 -930 198 248 69 50 chr3 127457862 127457963 -100066615 + L2 LINE L2 2719 2821 -493 967 246 106 35 chr3 127458553 127458894 -100065684 - MLT1A1 LTR MaLR 0 365 1 669 190 18 15 chr3 127459067 127459401 -100065177 + GA-rich Low_complexity Low_complexity 1 335 0 1254 95 11 11 chr3 127459617 127459806 -100064772 + AluYa5 SINE Alu 117 305 -6 857 102 0 8 chr3 127459847 127459974 -100064604 - L1PA15 LINE L1 0 6165 6040 2254 112 0 3 chr3 127459975 127460279 -100064299 + AluSx SINE Alu 1 303 -9 3458 116 8 30 chr3 127460340 127460790 -100063788 - L1PA15 LINE L1 -133 6032 5594 2333 112 0 3 chr3 127460790 127461104 -100063474 + AluSq SINE Alu 1 313 0 3458 116 8 30 chr3 127461104 127461178 -100063400 - L1PA15 LINE L1 -571 5594 5520 1054 188 10 0 chr3 127461180 127461372 -100063206 + L1M2 LINE L1 5513 5706 -594 * 1193 253 31 14 chr3 127461366 127461659 -100062919 - L1 LINE L1 -3372 2774 2477 534 85 93 0 chr3 127461661 127461954 -100062624 + (TA)n Simple_repeat Simple_repeat 1 320 0 869 229 22 13 chr3 127461957 127462188 -100062390 - L1 LINE L1 -3661 2485 2253 890 200 6 0 chr3 127462448 127462623 -100061955 - L1M4 LINE L1 -3600 2546 2371 2264 116 3 0 chr3 127462788 127463098 -100061480 + AluSx SINE Alu 1 311 -1 255 61 0 0 chr3 127463860 127463893 -100060685 + (CTG)n Simple_repeat Simple_repeat 3 35 0 28 48 0 0 chr3 127464462 127464504 -100060074 + AT_rich Low_complexity Low_complexity 1 42 0 199 204 0 0 chr3 127464807 127464851 -100059727 - L2 LINE L2 -1 3271 3228 996 146 7 7 chr3 127464911 127465062 -100059516 + FRAM SINE Alu 11 161 -15 1038 162 17 2 chr3 127465621 127465865 -100058713 - MER2 DNA MER2_type -9 336 42 2245 102 0 14 chr3 127465916 127466209 -100058369 - AluSx SINE Alu -23 289 1 1047 280 78 31 chr3 127466242 127466628 -100057950 - HERVL LTR ERVL -3805 1849 1446 565 263 0 50 chr3 127466658 127466818 -100057760 - HERVL LTR ERVL -4351 1413 1262 663 172 15 0 chr3 127466834 127466968 -100057610 - Charlie1 DNA MER1_type -12 2749 2614 * 3196 166 160 19 chr3 127466959 127467729 -100056849 - Charlie1 DNA MER1_type -452 2309 1432 1029 223 9 0 chr3 127467730 127467959 -100056619 + L1 LINE L1 2636 2866 -3280 3730 60 0 2 chr3 127468083 127468529 -100056049 + LTR5 LTR ERVK 522 966 -3 64729 13 1 0 chr3 127468536 127475676 -100048902 + HERVK LTR ERVK 4 7148 -95 452 101 18 147 chr3 127475676 127475771 -100048807 + SVA Other Other 857 938 -448 3879 87 49 2 chr3 127475771 127476343 -100048235 + LTR5 LTR ERVK 1 599 -370 452 101 18 147 chr3 127476343 127476356 -100048222 + SVA Other Other 938 951 -435 6242 205 15 43 chr3 127476482 127478069 -100046509 + L1 LINE L1 2876 4417 -1729 2239 114 0 19 chr3 127478297 127478613 -100045965 + AluSp SINE Alu 1 310 -3 4873 62 2 0 chr3 127478880 127479491 -100045087 - L1P LINE L1 -1101 5045 4434 4198 113 10 54 chr3 127479504 127480321 -100044257 + L1PA7 LINE L1 5254 6034 -120 255 238 40 79 chr3 127530801 127530902 -99993676 - MER34C LTR ERV1 0 585 489 1150 123 0 0 chr3 127530951 127531143 -99993435 + AluSg/x SINE Alu 131 322 0 1854 114 104 3 chr3 127531143 127531440 -99993138 + Tigger4(Zombi) DNA MER2_type 2399 2725 -6 202 363 79 33 chr3 127531500 127531715 -99992863 + L2 LINE L2 2582 2806 -508 264 350 40 0 chr3 127531731 127531831 -99992747 + MER5A DNA MER1_type 86 189 0 188 258 52 113 chr3 127531952 127532049 -99992529 + L2 LINE L2 2941 3031 -241 321 314 0 58 chr3 127532065 127532221 -99992357 - L2 LINE L2 -11 3302 3156 454 186 10 102 chr3 127532247 127532372 -99992206 + MLT1D LTR MaLR 1 107 -409 234 0 0 0 chr3 127532406 127532432 -99992146 + (TG)n Simple_repeat Simple_repeat 1 26 0 634 173 7 29 chr3 127532907 127533046 -99991532 + MLT1D LTR MaLR 94 229 -276 8171 23 6 3 chr3 127533456 127534565 -99990013 - L1PA3 LINE L1 -3 6152 5046 1486 39 6 0 chr3 127534567 127534749 -99989829 + L1P LINE L1 4212 4394 -1752 1049 335 54 36 chr3 127534878 127535540 -99989038 - ERVL LTR ERVL -4050 1714 1041 362 314 69 16 chr3 127535794 127536028 -99988550 - ERVL LTR ERVL -5067 597 355 2228 98 3 7 chr3 127536336 127536631 -99987947 - AluSq SINE Alu -19 294 1 1616 142 56 33 chr3 127536748 127537051 -99987527 + L1PA16 LINE L1 5857 6166 0 533 276 45 13 chr3 127537323 127537479 -99987099 - MIR3 SINE MIR -4 204 44 280 359 83 0 chr3 127538586 127538731 -99985847 + L3 LINE CR1 398 554 -1023 1713 177 0 14 chr3 127539117 127539445 -99985133 + AluJo SINE Alu 1 324 0 988 208 42 9 chr3 127540347 127540563 -99984015 - MIR SINE MIR -35 227 5 625 199 44 2 chr3 127540728 127540943 -99983635 - ORSL DNA AcHobo -3 272 1 2228 108 10 0 chr3 127541637 127541934 -99982644 - L1PB1 LINE L1 0 6151 5852 3019 182 36 5 chr3 127541938 127542552 -99982026 - L1 LINE L1 -1676 4470 3838 10888 21 0 2 chr3 127542667 127543889 -99980689 - HERVK LTR ERVK -3714 3529 2310 23 0 0 0 chr3 127544045 127544068 -99980510 + AT_rich Low_complexity Low_complexity 1 23 0 187 283 150 0 chr3 127544422 127544482 -99980096 - L2 LINE L2 -40 3232 3164 195 42 0 0 chr3 127544547 127544571 -99980007 + (TCTCTG)n Simple_repeat Simple_repeat 2 25 0 507 132 13 0 chr3 127544701 127544777 -99979801 - MLT1I LTR MaLR 0 409 333 708 145 8 107 chr3 127544777 127545019 -99979559 - AluSp SINE Alu -11 302 85 377 247 11 11 chr3 127546338 127546431 -99978147 - MIR SINE MIR -110 152 60 688 282 32 44 chr3 127547100 127547205 -99977373 - MIR SINE MIR -4 258 153 4200 91 32 0 chr3 127547205 127547742 -99976836 - MER41A LTR ERV1 0 554 1 688 282 32 44 chr3 127547742 127547884 -99976694 - MIR SINE MIR -109 153 14 376 325 103 20 chr3 127548279 127548482 -99976096 - MIR SINE MIR -21 241 22 3444 93 107 32 chr3 127550089 127550615 -99973963 - MER34B LTR ERV1 0 565 1 25 31 0 0 chr3 127551730 127551762 -99972816 + AT_rich Low_complexity Low_complexity 1 32 0 588 270 142 89 chr3 127552924 127553369 -99971209 - L3 LINE CR1 -29 1548 1071 2069 114 9 32 chr3 127553369 127553685 -99970893 + AluSg1 SINE Alu 1 309 0 588 270 142 89 chr3 127553685 127553747 -99970831 - L3 LINE CR1 -506 1071 1014 191 233 0 0 chr3 127553750 127553793 -99970785 - L2 LINE L2 -5 3308 3266 429 257 46 26 chr3 127554078 127554230 -99970348 - MLT1J1 LTR MaLR 0 446 292 446 247 28 72 chr3 127554316 127554473 -99970105 - MLT1J1 LTR MaLR -277 169 21 2195 114 7 0 chr3 127555022 127555319 -99969259 - AluSx SINE Alu -13 299 1 291 306 0 0 chr3 127555856 127555928 -99968650 - L2 LINE L2 0 3272 3201 229 303 30 26 chr3 127556548 127556653 -99967925 + MIR SINE MIR 31 137 -71 490 219 0 0 chr3 127556740 127556822 -99967756 + L1MCa LINE L1 16 97 -6329 1447 203 46 0 chr3 127556822 127557014 -99967564 + L1MA9 LINE L1 5958 6171 -141 360 0 0 0 chr3 127557014 127557054 -99967524 + (CA)n Simple_repeat Simple_repeat 2 41 0 1447 203 46 0 chr3 127557054 127557166 -99967412 + L1MA9 LINE L1 6171 6276 -36 772 119 8 0 chr3 127557165 127557283 -99967295 + L1MCa LINE L1 84 202 -6224 * 22 0 0 0 chr3 127557533 127557555 -99967023 + AT_rich Low_complexity Low_complexity 1 22 0 366 224 129 81 chr3 127557875 127558085 -99966493 + L1M4 LINE L1 2949 3168 -2978 518 221 29 88 chr3 127558104 127558308 -99966270 + L1MC4 LINE L1 5763 5954 -1854 280 250 0 65 chr3 127558281 127558389 -99966189 - L1MC4 LINE L1 -1328 6714 6614 * 228 281 0 24 chr3 127558319 127558401 -99966177 + L1MC4 LINE L1 6624 6703 -1339 * 298 262 28 21 chr3 127560162 127560303 -99964275 + G-rich Low_complexity Low_complexity 2 143 0 467 108 0 0 chr3 127560528 127560593 -99963985 - AluS SINE Alu -246 67 3 3006 129 9 7 chr3 127560595 127561046 -99963532 + L1PA15 LINE L1 5581 6032 -133 232 71 0 0 chr3 127561079 127561107 -99963471 - U6 snRNA snRNA -79 28 1 2254 112 0 3 chr3 127561107 127561411 -99963167 - AluSx SINE Alu -9 303 1 857 102 0 8 chr3 127561412 127561539 -99963039 + L1PA15 LINE L1 6040 6165 0 2338 105 0 0 chr3 127561580 127561885 -99962693 - AluY SINE Alu -6 305 1 454 215 66 0 chr3 127561887 127562008 -99962570 + L1M4 LINE L1 2531 2659 -3487 1672 183 0 13 chr3 127562011 127562311 -99962267 + AluJo SINE Alu 1 296 -16 215 334 57 0 chr3 127562461 127562567 -99962011 + MIR SINE MIR 38 154 -61 2144 128 10 0 chr3 127563095 127563392 -99961186 - AluSx SINE Alu -12 300 1 533 244 198 37 chr3 127563394 127563611 -99960967 + MLT1J2 LTR MaLR 37 288 -162 2294 100 0 3 chr3 127563775 127564076 -99960502 - AluSg SINE Alu -10 300 1 824 235 91 106 chr3 127564097 127564742 -99959836 + MLT1H LTR MaLR 1 590 0 1716 223 31 33 chr3 127564749 127565198 -99959380 - MER39 LTR ERV1 0 707 260 959 246 106 35 chr3 127566149 127566490 -99958088 - MLT1A1 LTR MaLR 0 365 1 669 190 18 15 chr3 127566663 127566997 -99957581 + GA-rich Low_complexity Low_complexity 1 335 0 2141 96 3 7 chr3 127567238 127567530 -99957048 - AluSc SINE Alu -18 291 1 498 184 298 7 chr3 127567613 127567754 -99956824 + MER5A DNA MER1_type 7 188 -1 2502 81 3 0 chr3 127568271 127568579 -99955999 - AluSp SINE Alu -4 309 1 701 257 87 58 chr3 127568828 127569206 -99955372 - L2 LINE L2 -2 3311 2923 23 0 0 0 chr3 127570644 127570667 -99953911 + AT_rich Low_complexity Low_complexity 1 23 0 1247 177 4 18 chr3 127571812 127572038 -99952540 - MLT2C1 LTR ERVL -174 223 1 238 218 36 0 chr3 127572146 127572201 -99952377 - L2 LINE L2 -2 3270 3214 218 333 164 14 chr3 127572206 127572413 -99952165 - L2 LINE L2 -1728 1586 1349 24 0 0 0 chr3 127573190 127573214 -99951364 + AT_rich Low_complexity Low_complexity 1 24 0 206 31 0 31 chr3 127573254 127573286 -99951292 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 294 195 0 62 chr3 127573500 127573613 -99950965 + (CCCG)n Simple_repeat Simple_repeat 3 108 0 496 155 0 0 chr3 127573681 127573765 -99950813 + SVA Other Other 1300 1383 -3 1915 167 5 86 chr3 127574027 127574423 -99950155 - MLT1A1 LTR MaLR 0 365 2 2320 94 3 3 chr3 127574433 127574731 -99949847 - AluSx SINE Alu -14 298 1 263 375 21 0 chr3 127574736 127574832 -99949746 - L2 LINE L2 -16 3297 3200 338 286 55 0 chr3 127574920 127575011 -99949567 + MIR SINE MIR 31 126 -136 518 235 49 31 chr3 127575138 127575334 -99949244 - MLT1J2 LTR MaLR -237 209 1 14534 128 61 7 chr3 127576095 127578383 -99946195 - Tigger1 DNA MER2_type 0 2418 7 3843 127 6 51 chr3 127578525 127579170 -99945408 - L1MC2 LINE L1 -8 6336 5721 1492 226 36 30 chr3 127579580 127579943 -99944635 - MLT1A1 LTR MaLR 0 365 1 325 278 124 0 chr3 127581440 127581537 -99943041 - MIR SINE MIR -142 120 12 395 260 24 16 chr3 127583216 127583339 -99941239 - MER5B DNA MER1_type -53 125 2 515 233 103 7 chr3 127584348 127584494 -99940084 + MIR SINE MIR 91 250 -12 828 196 55 0 chr3 127584556 127584719 -99939859 + MER5A DNA MER1_type 18 189 0 1885 198 36 47 chr3 127585537 127585981 -99938597 - MER39 LTR ERV1 -9 698 260 412 286 41 0 chr3 127586059 127586157 -99938421 - L2 LINE L2 -9 3263 3162 333 0 0 0 chr3 127586336 127586373 -99938205 + (CA)n Simple_repeat Simple_repeat 2 38 0 1432 204 10 23 chr3 127587617 127587921 -99936657 - AluSx SINE Alu -2 300 1 2785 224 3 29 chr3 127588276 127588968 -99935610 - L1 LINE L1 -2837 3309 2636 3196 166 160 19 chr3 127588969 127589739 -99934839 + Charlie1 DNA MER1_type 1432 2309 -452 663 172 15 0 chr3 127589730 127589864 -99934714 + Charlie1 DNA MER1_type 2614 2749 -12 * 565 263 0 50 chr3 127589880 127590040 -99934538 + ERVL LTR ERVL 1262 1413 -4351 1047 280 78 31 chr3 127590070 127590456 -99934122 + ERVL LTR ERVL 1446 1849 -3805 2245 102 0 14 chr3 127590489 127590782 -99933796 + AluSx SINE Alu 1 289 -23 1038 162 17 2 chr3 127590833 127591077 -99933501 + MER2 DNA MER2_type 42 336 -9 996 146 7 7 chr3 127591636 127591787 -99932791 - FRAM SINE Alu -15 161 11 199 204 0 0 chr3 127591847 127591891 -99932687 + L2 LINE L2 3228 3271 -1 28 48 0 0 chr3 127592194 127592236 -99932342 + AT_rich Low_complexity Low_complexity 1 42 0 255 61 0 0 chr3 127592805 127592838 -99931740 + (CAG)n Simple_repeat Simple_repeat 3 35 0 2242 119 3 0 chr3 127593600 127593910 -99930668 - AluSx SINE Alu -1 311 1 890 200 6 0 chr3 127594075 127594250 -99930328 + L1M4 LINE L1 2371 2546 -3600 880 225 22 13 chr3 127594510 127594741 -99929837 + L1 LINE L1 2253 2485 -3661 534 85 93 0 chr3 127594744 127595037 -99929541 + (TA)n Simple_repeat Simple_repeat 1 320 0 1193 253 31 14 chr3 127595039 127595332 -99929246 + L1 LINE L1 2477 2774 -3372 1054 188 10 0 chr3 127595326 127595518 -99929060 - L1M2 LINE L1 -594 5706 5513 * 538 111 0 0 chr3 127595520 127595592 -99928986 + L1P4 LINE L1 5520 5591 -574 2346 107 13 0 chr3 127595594 127595903 -99928675 - AluSq SINE Alu 0 313 1 2362 100 7 0 chr3 127595919 127596229 -99928349 - AluSp SINE Alu -1 312 1 1027 105 0 14 chr3 127596307 127596450 -99928128 - AluSq/x SINE Alu -172 141 1 243 270 10 20 chr3 127596724 127596824 -99927754 + CT-rich Low_complexity Low_complexity 2 100 0 556 199 137 6 chr3 127597730 127597891 -99926687 + MLT1D LTR MaLR 324 505 0 504 281 28 45 chr3 127598189 127598367 -99926211 - MIR SINE MIR -87 175 1 185 129 0 0 chr3 127598702 127598733 -99925845 + MIR SINE MIR 113 143 -65 272 228 174 34 chr3 127598750 127598899 -99925679 - MER5B DNA MER1_type -5 173 4 215 333 22 0 chr3 127599633 127599723 -99924855 + MIR SINE MIR 106 197 -65 692 232 66 25 chr3 127599796 127600037 -99924541 + MIR SINE MIR 11 261 -1 1054 98 115 6 chr3 127600058 127600232 -99924346 + MER107 DNA MER1_type 5 197 0 294 267 118 44 chr3 127600385 127600520 -99924058 - L3 LINE CR1 -140 1437 1293 323 278 28 9 chr3 127601951 127602059 -99922519 - L2 LINE L2 -14 3299 3190 183 382 159 6 chr3 127602417 127602587 -99921991 + L2 LINE L2 2626 2821 -493 23 0 0 0 chr3 127602860 127602883 -99921695 + AT_rich Low_complexity Low_complexity 1 23 0 493 228 198 5 chr3 127603296 127603493 -99921085 + L2 LINE L2 3057 3291 -22 23 0 0 0 chr3 127603495 127603518 -99921060 + AT_rich Low_complexity Low_complexity 1 23 0 220 320 90 16 chr3 127603703 127603825 -99920753 + L3 LINE CR1 989 1119 -458 241 284 0 45 chr3 127604090 127604178 -99920400 + AluSg SINE Alu 6 89 -211 1437 6 0 6 chr3 127604178 127604341 -99920237 + HERVK LTR ERVK 3471 3632 -3611 2451 64 7 0 chr3 127604755 127605050 -99919528 + AluY SINE Alu 1 297 -14 771 163 177 0 chr3 127605791 127605938 -99918640 + MER21B LTR ERV1 327 499 -364 1848 40 53 9 chr3 127609706 127609933 -99914645 + AluY SINE Alu 64 300 -11 334 232 61 0 chr3 127610703 127610802 -99913776 + MIR SINE MIR 46 150 -112 378 0 0 0 chr3 127611122 127611164 -99913414 + (CA)n Simple_repeat Simple_repeat 2 43 0 199 177 76 51 chr3 127611164 127611235 -99913343 + MER5A DNA MER1_type 77 152 -37 270 0 0 0 chr3 127611864 127611894 -99912684 + (TG)n Simple_repeat Simple_repeat 2 31 0 499 268 0 26 chr3 127612740 127612893 -99911685 + MIR SINE MIR 114 262 0 1510 115 16 53 chr3 127613753 127613997 -99910581 + AluJo SINE Alu 58 292 -20 842 171 33 0 chr3 127613997 127614149 -99910429 + L1MB7 LINE L1 6011 6167 -17 534 159 0 0 chr3 127614248 127614336 -99910242 - L1PB1 LINE L1 -14 6137 6050 188 75 0 50 chr3 127614823 127614863 -99909715 + (TTTTTG)n Simple_repeat Simple_repeat 5 42 0 735 179 0 0 chr3 127614874 127614991 -99909587 - FRAM SINE Alu -27 149 33 216 0 0 0 chr3 127615836 127615860 -99908718 + (T)n Simple_repeat Simple_repeat 1 24 0 1586 192 3 27 chr3 127617334 127617626 -99906952 + AluJb SINE Alu 1 285 -27 328 281 15 59 chr3 127618166 127618301 -99906277 + L2 LINE L2 3144 3272 0 377 281 82 7 chr3 127619509 127619655 -99904923 + L1ME4a LINE L1 5962 6118 -3 581 272 22 22 chr3 127619727 127619911 -99904667 + MIR SINE MIR 63 246 -16 227 354 0 0 chr3 127620191 127620273 -99904305 + MIR SINE MIR 58 139 -69 * 666 264 100 9 chr3 127620270 127620501 -99904077 - MIR SINE MIR -2 260 9 1590 212 13 7 chr3 127620627 127620929 -99903649 - AluJo SINE Alu -8 304 1 747 321 12 8 chr3 127621071 127621317 -99903261 - MIR SINE MIR -13 249 3 1040 302 24 27 chr3 127621540 127621873 -99902705 + MLT1I LTR MaLR 1 334 -75 2279 96 3 7 chr3 127621873 127622176 -99902402 + AluSp SINE Alu 1 302 -11 1040 302 24 27 chr3 127622176 127622252 -99902326 + MLT1I LTR MaLR 334 409 0 19431 19 1 1 chr3 127622512 127624685 -99899893 - HERVK LTR ERVK -5071 2172 1 8343 49 9 0 chr3 127624688 127625645 -99898933 - LTR5 LTR ERVK -3 966 1 409 84 11 168 chr3 127625645 127625740 -99898838 - SVA Other Other -450 936 857 5233 19 0 2 chr3 127625740 127626334 -99898244 - HERVK LTR ERVK -95 7148 6556 183 80 0 0 chr3 127627224 127627249 -99897329 + (A)n Simple_repeat Simple_repeat 1 25 0 249 294 174 9 chr3 127628064 127628173 -99896405 + L2 LINE L2 3181 3307 -6 695 159 204 0 chr3 127628427 127628584 -99895994 + MER53 DNA DNA 1 189 0 1176 163 9 32 chr3 127629702 127629923 -99894655 - MER20 DNA MER1_type -3 216 1 210 37 0 0 chr3 127630346 127630373 -99894205 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 225 0 0 0 chr3 127630372 127630397 -99894181 + (TG)n Simple_repeat Simple_repeat 1 25 0 186 378 18 9 chr3 127630567 127630678 -99893900 + L2 LINE L2 2891 3002 -270 257 95 63 0 chr3 127630708 127630771 -99893807 + (CA)n Simple_repeat Simple_repeat 2 68 0 211 266 78 78 chr3 127630852 127630980 -99893598 + L2 LINE L2 3178 3305 -8 464 144 10 52 chr3 127632243 127632340 -99892238 - MLT1D LTR MaLR -319 186 94 187 250 0 0 chr3 127633087 127633135 -99891443 + L2 LINE L2 2992 3039 -233 193 385 61 40 chr3 127633227 127633375 -99891203 + L2 LINE L2 3121 3271 -1 261 257 43 0 chr3 127633969 127634039 -99890539 - MIR SINE MIR -74 188 116 710 219 92 6 chr3 127634195 127634359 -99890219 + MER45A DNA AcHobo 1 178 0 423 247 43 25 chr3 127634359 127634516 -99890062 - MIR3 SINE MIR -5 203 44 2075 127 3 10 chr3 127635089 127635396 -99889182 + AluSx SINE Alu 1 305 -7 2360 109 0 0 chr3 127635571 127635875 -99888703 + AluSg SINE Alu 1 304 -6 434 256 8 16 chr3 127635976 127636105 -99888473 + L2 LINE L2 3186 3313 0 320 278 0 21 chr3 127636680 127636777 -99887801 + LTR67 LTR ERVL 459 553 -4 217 314 105 19 chr3 127637183 127637288 -99887290 + MER5B DNA MER1_type 3 116 -62 2010 134 0 55 chr3 127637290 127637619 -99886959 - AluSx SINE Alu -1 311 1 256 182 234 26 chr3 127637624 127637701 -99886877 - L1MC4 LINE L1 -1 8041 7949 238 324 10 0 chr3 127637727 127637829 -99886749 + (TA)n Simple_repeat Simple_repeat 2 104 0 3054 259 159 18 chr3 127637873 127639107 -99885471 - L1MC4 LINE L1 -174 7868 6461 1925 181 5 24 chr3 127639554 127639925 -99884653 - MLT1A1 LTR MaLR 0 365 2 21 0 0 0 chr3 127640987 127641008 -99883570 + AT_rich Low_complexity Low_complexity 1 21 0 2220 101 0 23 chr3 127641337 127641645 -99882933 + AluSq SINE Alu 1 301 -12 322 278 56 0 chr3 127641758 127641848 -99882730 - MER63 DNA MER1_type -2 1058 964 * 411 209 154 9 chr3 127641840 127641950 -99882628 - MER63 DNA MER1_type -310 752 1 4940 222 16 19 chr3 127642001 127642678 -99881900 - L1P LINE L1 -1778 4368 3694 198 0 0 0 chr3 127642678 127642700 -99881878 + (TTG)n Simple_repeat Simple_repeat 3 24 0 4940 222 16 19 chr3 127642700 127643192 -99881386 - L1P LINE L1 -2452 3694 3202 * 6764 167 26 6 chr3 127643187 127643837 -99880741 + L1PA16 LINE L1 3886 4522 -1644 2140 146 68 29 chr3 127643837 127644249 -99880329 - MSTA LTR MaLR 0 428 1 6764 167 26 6 chr3 127644249 127645836 -99878742 + L1PA16 LINE L1 4522 6166 0 195 262 16 16 chr3 127646109 127646170 -99878408 - MIR3 SINE MIR -4 204 144 512 311 24 12 chr3 127646333 127646497 -99878081 - MIR SINE MIR -94 168 3 647 349 27 24 chr3 127646720 127647050 -99877528 + MLT1I LTR MaLR 1 331 -78 2209 107 7 3 chr3 127647052 127647360 -99877218 + AluSx SINE Alu 1 309 -3 7527 49 11 11 chr3 127647537 127649039 -99875539 + SVA Other Other 1 1386 0 332 286 0 54 chr3 127649298 127649410 -99875168 - MLT1A1 LTR MaLR 0 365 260 822 219 97 12 chr3 127649687 127649934 -99874644 - L1ME LINE L1 -641 5525 5258 21 71 0 0 chr3 127649977 127650019 -99874559 + AT_rich Low_complexity Low_complexity 1 42 0 899 167 0 0 chr3 127650247 127650379 -99874199 + FLAM_C SINE Alu 2 133 0 298 352 100 56 chr3 127650914 127651363 -99873215 + L2 LINE L2 2804 3272 0 558 265 115 104 chr3 127651996 127652430 -99872148 - L3 LINE CR1 -29 1548 1110 2193 92 0 43 chr3 127652441 127652766 -99871812 + AluY SINE Alu 1 311 0 349 297 124 26 chr3 127652812 127652858 -99871720 + L1ME4a LINE L1 5818 5858 -263 2472 127 51 0 chr3 127652858 127653212 -99871366 - MER83C LTR ERV1 -1 372 1 349 297 124 26 chr3 127653212 127653431 -99871147 + L1ME4a LINE L1 5858 6109 -12 317 355 113 25 chr3 127654793 127655193 -99869385 + L2 LINE L2 707 1141 -2173 361 310 62 62 chr3 127655204 127655575 -99869003 + L2 LINE L2 1396 1766 -1548 700 297 77 15 chr3 127655704 127656145 -99868433 - LTR33 LTR ERVL -3 520 40 428 302 200 44 chr3 127656205 127656367 -99868211 + L2 LINE L2 1969 2104 -1210 210 37 0 0 chr3 127656367 127656394 -99868184 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 428 302 200 44 chr3 127656394 127656661 -99867917 + L2 LINE L2 2104 2465 -849 574 234 135 31 chr3 127656776 127656998 -99867580 + MLT1J2 LTR MaLR 1 245 -205 298 203 81 14 chr3 127657098 127657172 -99867406 - MIR SINE MIR -136 126 48 266 223 48 78 chr3 127657437 127657643 -99866935 + AluSx SINE Alu 18 217 -85 3325 121 2 9 chr3 127657839 127658367 -99866211 + LTR5 LTR ERVK 443 966 -3 2399 128 126 5 chr3 127658719 127659101 -99865477 - MSTA LTR MaLR 0 428 1 548 174 0 0 chr3 127659128 127659214 -99865364 + Tigger4(Zombi) DNA MER2_type 2 87 -2644 * 2058 131 96 35 chr3 127659211 127659323 -99865255 + Tigger4(Zombi) DNA MER2_type 2295 2399 -332 2202 98 0 11 chr3 127659323 127659647 -99864931 + AluY SINE Alu 1 321 0 2058 131 96 35 chr3 127659647 127659939 -99864639 + Tigger4(Zombi) DNA MER2_type 2399 2725 -6 199 367 79 33 chr3 127659999 127660214 -99864364 + L2 LINE L2 2582 2806 -508 264 350 40 0 chr3 127660230 127660330 -99864248 + MER5A DNA MER1_type 86 189 0 188 258 52 113 chr3 127660451 127660548 -99864030 + L2 LINE L2 2941 3031 -241 264 264 0 0 chr3 127660564 127660617 -99863961 - L2 LINE L2 -11 3261 3209 11381 11 0 1 chr3 127660789 127662032 -99862546 + HERVK LTR ERVK 5373 6614 -629 388 307 65 13 chr3 127662283 127662436 -99862142 - MIR3 SINE MIR -4 204 44 354 277 24 0 chr3 127663652 127663735 -99860843 + MER81 DNA DNA 2 86 -28 286 358 42 0 chr3 127663754 127663874 -99860704 - MIR SINE MIR -117 145 21 507 242 57 0 chr3 127664122 127664246 -99860332 - MER94 DNA DNA 0 134 4 238 296 14 0 chr3 127664387 127664458 -99860120 - MER63 DNA MER1_type 0 1061 990 359 186 10 0 chr3 127664563 127664665 -99859913 + CT-rich Low_complexity Low_complexity 1 103 0 2274 104 0 3 chr3 127664758 127665056 -99859522 - AluSg SINE Alu -12 298 2 507 282 20 7 chr3 127665555 127665704 -99858874 + MLT2F LTR ERVL 457 607 -56 573 125 0 0 chr3 127665704 127665784 -99858794 + AluSx SINE Alu 223 302 -7 264 233 0 0 chr3 127665798 127665858 -99858720 + MER46C DNA MER2_type 96 155 -183 339 25 0 0 chr3 127666415 127666455 -99858123 + (GA)n Simple_repeat Simple_repeat 1 40 0 260 316 0 11 chr3 127667344 127667439 -99857139 - MIR3 SINE MIR -15 193 100 2027 149 16 0 chr3 127667479 127667787 -99856791 + AluSq SINE Alu 1 313 0 210 37 0 0 chr3 127667806 127667833 -99856745 + (CAAG)n Simple_repeat Simple_repeat 2 28 0 640 247 53 32 chr3 127668417 127668607 -99855971 - MIR SINE MIR 0 262 69 27 49 0 0 chr3 127668705 127668746 -99855832 + AT_rich Low_complexity Low_complexity 1 41 0 1104 110 35 6 chr3 127668746 127668919 -99855659 - L1MA2 LINE L1 0 6304 6127 406 330 24 14 chr3 127668921 127669133 -99855445 - L1ME LINE L1 -417 5704 5491 481 253 93 44 chr3 127669612 127669625 -99854953 - L2 LINE L2 0 3313 3302 1246 217 73 14 chr3 127669625 127669797 -99854781 - AluJo SINE Alu -9 303 106 273 57 0 0 chr3 127669797 127669832 -99854746 + (TTA)n Simple_repeat Simple_repeat 2 36 0 1246 217 73 14 chr3 127669832 127669945 -99854633 - AluJo SINE Alu -206 106 1 481 253 93 44 chr3 127669945 127670113 -99854465 - L2 LINE L2 -11 3302 3123 235 270 59 72 chr3 127670499 127670651 -99853927 + MIR3 SINE MIR 38 187 -21 201 267 186 0 chr3 127671781 127671867 -99852711 + L2 LINE L2 3167 3268 -4 588 251 184 0 chr3 127672005 127672212 -99852366 + MIR SINE MIR 18 262 0 947 231 14 27 chr3 127672555 127672776 -99851802 - MIR SINE MIR -32 230 13 773 118 67 0 chr3 127673703 127673822 -99850756 - L1MA3 LINE L1 0 6305 6179 272 246 46 0 chr3 127674936 127675001 -99849577 - MIR SINE MIR -71 191 124 427 211 136 20 chr3 127677472 127677619 -99846959 - MER5A DNA MER1_type 0 189 26 205 325 120 34 chr3 127677979 127678096 -99846482 + MIR3 SINE MIR 10 136 -72 351 220 25 25 chr3 127678467 127678585 -99845993 - L1 LINE L1 -3776 2370 2253 890 200 6 0 chr3 127678845 127679020 -99845558 - L1M4 LINE L1 -3600 2546 2371 2198 121 3 0 chr3 127679185 127679490 -99845088 + AluSx SINE Alu 1 306 -6 255 61 0 0 chr3 127680260 127680293 -99844285 + (CTG)n Simple_repeat Simple_repeat 3 35 0 28 48 0 0 chr3 127680861 127680903 -99843675 + AT_rich Low_complexity Low_complexity 1 42 0 199 204 0 0 chr3 127681206 127681250 -99843328 - L2 LINE L2 -1 3271 3228 1012 127 7 20 chr3 127681310 127681460 -99843118 + FRAM SINE Alu 11 158 -18 26 0 0 0 chr3 127681461 127681487 -99843091 + AT_rich Low_complexity Low_complexity 1 26 0 29 60 0 0 chr3 127681962 127682012 -99842566 + AT_rich Low_complexity Low_complexity 1 50 0 1854 166 7 0 chr3 127682321 127682616 -99841962 - AluJb SINE Alu -11 301 5 189 0 0 0 chr3 127682916 127682937 -99841641 + (TTCA)n Simple_repeat Simple_repeat 3 23 0 630 220 71 18 chr3 127683790 127683958 -99840620 - MER5B DNA MER1_type -1 177 1 28 0 0 0 chr3 127684409 127684437 -99840141 + AT_rich Low_complexity Low_complexity 1 28 0 2028 134 6 16 chr3 127684437 127684751 -99839827 - AluJb SINE Alu -1 311 1 476 216 58 29 chr3 127684911 127684926 -99839652 + L1M4 LINE L1 2517 2530 -3616 2215 118 0 0 chr3 127684926 127685230 -99839348 - AluY SINE Alu -7 304 1 476 216 58 29 chr3 127685230 127685353 -99839225 + L1M4 LINE L1 2530 2659 -3487 1709 184 0 10 chr3 127685356 127685655 -99838923 + AluJo SINE Alu 1 296 -16 199 337 54 9 chr3 127685805 127685917 -99838661 + MIR SINE MIR 38 159 -61 1968 113 14 24 chr3 127686157 127686448 -99838130 - AluSg SINE Alu -22 288 1 533 244 198 37 chr3 127686450 127686667 -99837911 + MLT1J2 LTR MaLR 37 288 -162 1790 177 3 3 chr3 127686831 127687131 -99837447 - AluSx SINE Alu -10 302 3 584 293 17 6 chr3 127687157 127687331 -99837247 + MIR SINE MIR 77 252 -10 2344 97 13 0 chr3 127687524 127687832 -99836746 - AluSx SINE Alu 0 312 1 2349 96 10 3 chr3 127687847 127688150 -99836428 - AluSp SINE Alu -8 305 1 275 230 90 40 chr3 127688151 127688251 -99836327 - MER46C DNA MER2_type -232 106 2 596 153 18 35 chr3 127688480 127688650 -99835928 + GA-rich Low_complexity Low_complexity 4 170 0 2249 92 0 3 chr3 127688915 127689207 -99835371 - AluSc SINE Alu -18 291 1 485 191 298 7 chr3 127689290 127689431 -99835147 + MER5A DNA MER1_type 7 188 -1 2485 84 3 0 chr3 127689945 127690254 -99834324 - AluSp SINE Alu -3 310 1 2215 122 3 0 chr3 127690429 127690733 -99833845 - AluSx SINE Alu -7 305 1 207 0 0 0 chr3 127692549 127692572 -99832006 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr3 127692789 127692812 -99831766 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 184 200 180 0 chr3 127693170 127693220 -99831358 - MIR SINE MIR -76 132 74 205 208 0 19 chr3 127693655 127693708 -99830870 + T-rich Low_complexity Low_complexity 3 54 0 284 277 15 0 chr3 127693840 127693905 -99830673 - L2 LINE L2 -2 3311 3246 382 313 60 13 chr3 127693910 127694060 -99830518 + MIR3 SINE MIR 44 200 -8 1803 180 0 3 chr3 127694363 127694668 -99829910 - AluJo SINE Alu -8 304 1 243 0 0 0 chr3 127694669 127694696 -99829882 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 21 0 0 0 chr3 127694699 127694720 -99829858 + AT_rich Low_complexity Low_complexity 1 21 0 291 240 29 87 chr3 127694943 127695047 -99829531 + L2 LINE L2 3206 3303 -10 1578 86 14 14 chr3 127695368 127695590 -99828988 + AluY SINE Alu 1 222 -89 1017 167 4 67 chr3 127695649 127695889 -99828689 + AluJb SINE Alu 85 309 -3 1595 165 21 92 chr3 127695900 127696325 -99828253 + L1MB8 LINE L1 5784 6178 0 330 254 109 27 chr3 127696755 127696865 -99827713 - MIR SINE MIR -124 138 20 540 249 153 68 chr3 127698152 127698621 -99825957 + MLT1J LTR MaLR 1 509 -2 301 281 70 53 chr3 127698630 127698744 -99825834 - L2 LINE L2 -4 3268 3153 1824 273 65 17 chr3 127699620 127700370 -99824208 - L1MC4a LINE L1 -1768 6040 5255 1111 150 23 0 chr3 127700452 127700625 -99823953 - AluJo SINE Alu -7 305 129 747 149 18 0 chr3 127700652 127700766 -99823812 - AluJo SINE Alu -176 136 21 1632 174 4 18 chr3 127702230 127702506 -99822072 - AluJo SINE Alu -30 282 11 1915 148 0 0 chr3 127702551 127702835 -99821743 - AluJb SINE Alu -25 287 4 420 339 48 26 chr3 127702883 127703110 -99821468 - L1ME LINE L1 -379 5742 5511 363 219 0 0 chr3 127703268 127703350 -99821228 - L1MB8 LINE L1 -313 5865 5784 1017 167 4 67 chr3 127703361 127703601 -99820977 - AluJb SINE Alu -3 309 85 1535 85 14 18 chr3 127703660 127703883 -99820695 - AluY SINE Alu -89 222 1 190 278 76 76 chr3 127704614 127704758 -99819820 - L2 LINE L2 -2 3270 3127 23 0 0 0 chr3 127705068 127705091 -99819487 + AT_rich Low_complexity Low_complexity 1 23 0 325 278 124 0 chr3 127706169 127706266 -99818312 - MIR SINE MIR -142 120 12 276 30 0 0 chr3 127707562 127707595 -99816983 + (TG)n Simple_repeat Simple_repeat 1 33 0 625 202 43 7 chr3 127707935 127708148 -99816430 + ORSL DNA AcHobo 1 272 -3 966 213 42 9 chr3 127708313 127708529 -99816049 + MIR SINE MIR 5 227 -35 197 245 0 20 chr3 127709117 127709166 -99815412 - MIR SINE MIR -122 140 93 2286 119 0 0 chr3 127709747 127710050 -99814528 - AluSx SINE Alu -9 303 1 1233 144 5 0 chr3 127710050 127710232 -99814346 - LTR26B LTR ERV1 -348 183 1 796 250 74 46 chr3 127710308 127710592 -99813986 + LTR33 LTR ERVL 38 329 -192 1558 198 106 10 chr3 127710731 127711146 -99813432 - LTR26 LTR ERV1 0 603 149 2042 101 3 21 chr3 127711256 127711544 -99813034 + AluSp SINE Alu 28 310 -3 6358 39 5 0 chr3 127711811 127712576 -99812002 - L1P LINE L1 -1101 5045 4277 391 290 57 16 chr3 127713190 127713314 -99811264 + L2 LINE L2 3142 3270 -2 688 235 0 15 chr3 127713388 127713524 -99811054 - MLT1A1 LTR MaLR 0 365 232 1754 203 33 52 chr3 127713526 127714008 -99810570 - MER4B LTR ERV1 0 610 138 2148 82 24 0 chr3 127714120 127714413 -99810165 - L1P LINE L1 -3442 2704 2405 3145 169 6 0 chr3 127714413 127714928 -99809650 - L1P LINE L1 -1899 4247 3730 1515 115 16 53 chr3 127715615 127715859 -99808719 + AluJo SINE Alu 58 292 -20 853 178 33 0 chr3 127715859 127716011 -99808567 + L1MB7 LINE L1 6011 6167 -17 2225 92 5 75 chr3 127716110 127716511 -99808067 - L1PB1 LINE L1 -14 6137 5765 23 0 0 0 chr3 127716829 127716852 -99807726 + AT_rich Low_complexity Low_complexity 1 23 0 239 308 0 33 chr3 127717188 127717305 -99807273 + CT-rich Low_complexity Low_complexity 4 176 0 1427 158 60 54 chr3 127717563 127717879 -99806699 + MER33 DNA MER1_type 5 322 -2 1615 184 3 17 chr3 127718064 127718363 -99806215 - AluJo SINE Alu -17 295 1 5561 60 3 0 chr3 127719984 127720650 -99803928 + L1PA8 LINE L1 5503 6170 -2 2023 211 83 25 chr3 127720653 127721218 -99803360 + L1MC4 LINE L1 7444 8041 -1 711 259 60 93 chr3 127722523 127723115 -99801463 - L2 LINE L2 0 3313 2646 12207 22 1 1 chr3 127723691 127725076 -99799502 - HERVK LTR ERVK -3222 4021 2637 933 204 58 43 chr3 127726473 127726856 -99797722 - Charlie2a DNA MER1_type -10 2852 734 295 287 43 17 chr3 127726855 127726970 -99797608 - Charlie2a DNA MER1_type -2388 474 357 * 216 158 0 0 chr3 127727164 127727202 -99797376 + CT-rich Low_complexity Low_complexity 2 39 0 1425 142 65 12 chr3 127727471 127727717 -99796861 + MER21A LTR ERV1 6 264 -667 1466 164 135 33 chr3 127727728 127728173 -99796405 + MER21A LTR ERV1 381 925 -6 1642 89 0 0 chr3 127728366 127728569 -99796009 - AluSq SINE Alu -110 203 1 3086 122 9 4 chr3 127728569 127729019 -99795559 + L1PA15 LINE L1 5581 6032 -133 232 71 0 0 chr3 127729052 127729080 -99795498 - U6 snRNA snRNA -79 28 1 2358 90 3 3 chr3 127729080 127729380 -99795198 - AluSx SINE Alu -12 300 1 263 375 21 0 chr3 127729385 127729481 -99795097 - L2 LINE L2 -16 3297 3200 419 276 41 0 chr3 127729752 127729850 -99794728 + L2 LINE L2 3162 3263 -9 1222 188 46 57 chr3 127729928 127730279 -99794299 + MER39 LTR ERV1 260 606 -101 2299 105 0 7 chr3 127731000 127731306 -99793272 - AluSx SINE Alu -8 304 1 1018 105 0 14 chr3 127731384 127731527 -99793051 - AluSq/x SINE Alu -171 141 1 243 270 10 20 chr3 127731801 127731901 -99792677 + CT-rich Low_complexity Low_complexity 2 100 0 288 227 0 0 chr3 127733194 127733282 -99791296 + (CA)n Simple_repeat Simple_repeat 2 89 0 1267 227 13 39 chr3 127733862 127734170 -99790408 + AluJo SINE Alu 2 301 -1 194 136 23 0 chr3 127734432 127734476 -99790102 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 202 277 15 0 chr3 127735423 127735431 -99789147 + (TATATG)n Simple_repeat Simple_repeat 2 8 -59 1950 144 20 7 chr3 127735431 127735737 -99788841 + AluSx SINE Alu 1 310 -2 202 277 15 0 chr3 127735737 127735793 -99788785 + (TATATG)n Simple_repeat Simple_repeat 8 67 0 226 224 0 0 chr3 127735796 127735845 -99788733 - L1MC4 LINE L1 -1334 6708 6660 222 105 0 0 chr3 127736667 127736705 -99787873 + (CA)n Simple_repeat Simple_repeat 2 39 0 504 0 0 0 chr3 127738037 127738093 -99786485 + (TG)n Simple_repeat Simple_repeat 1 56 0 351 0 0 0 chr3 127738837 127738876 -99785702 + (CA)n Simple_repeat Simple_repeat 1 39 0 2470 60 0 22 chr3 127739114 127739429 -99785149 - AluY SINE Alu -3 308 1 190 278 76 76 chr3 127740158 127740302 -99784276 - L2 LINE L2 -2 3270 3127 1824 131 18 99 chr3 127740905 127741287 -99783291 + MLT1B LTR MaLR 35 385 -5 294 387 95 6 chr3 127741317 127741485 -99783093 - L3 LINE CR1 -1282 295 113 356 178 89 153 chr3 127741494 127741651 -99782927 - MIR SINE MIR 0 262 116 232 228 70 0 chr3 127741654 127741711 -99782867 - MIR SINE MIR -116 146 86 181 134 0 119 chr3 127741958 127742025 -99782553 + (G)n Simple_repeat Simple_repeat 1 59 0 480 209 64 0 chr3 127742575 127742685 -99781893 - L1MC4 LINE L1 0 8042 7926 222 227 47 20 chr3 127742733 127742883 -99781695 + (TA)n Simple_repeat Simple_repeat 2 155 0 1225 221 109 19 chr3 127742920 127743295 -99781283 - L1MC4 LINE L1 -150 7892 7484 24 0 0 0 chr3 127743588 127743612 -99780966 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 127744306 127744327 -99780251 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 127744371 127744395 -99780183 + AT_rich Low_complexity Low_complexity 1 24 0 2355 84 0 0 chr3 127744438 127744737 -99779841 + AluY SINE Alu 1 299 -12 784 197 46 83 chr3 127744827 127745045 -99779533 - MER63A DNA MER1_type 0 210 1 337 278 22 0 chr3 127745233 127745323 -99779255 + Charlie2 DNA MER1_type 59 150 -2632 283 310 50 10 chr3 127746509 127746609 -99777969 + MIR SINE MIR 43 146 -116 991 90 0 22 chr3 127748579 127748713 -99775865 - FLAM_C SINE Alu -1 132 2 2049 109 0 0 chr3 127749086 127749352 -99775226 + AluSx SINE Alu 17 282 -30 9216 58 5 26 chr3 127749726 127751033 -99773545 - HERVK LTR ERVK -2068 5175 3897 2258 107 0 3 chr3 127751858 127752156 -99772422 + AluSg SINE Alu 2 298 -12 378 159 0 0 chr3 127752249 127752337 -99772241 + GA-rich Low_complexity Low_complexity 1 88 0 257 203 63 13 chr3 127752772 127752851 -99771727 + MER69 DNA AcHobo 2387 2469 -57 975 162 7 0 chr3 127752991 127753145 -99771433 - FRAM SINE Alu -30 146 1 25 0 0 0 chr3 127754064 127754089 -99770489 + AT_rich Low_complexity Low_complexity 1 25 0 1881 147 17 3 chr3 127754095 127754388 -99770190 + AluSp SINE Alu 1 297 -16 322 140 0 0 chr3 127754408 127754458 -99770120 + L1PA7 LINE L1 6104 6153 -1 23 0 0 0 chr3 127755001 127755024 -99769554 + AT_rich Low_complexity Low_complexity 1 23 0 1167 109 171 19 chr3 127755469 127755680 -99768898 - MER2 DNA MER2_type -97 248 6 806 129 31 78 chr3 127756549 127756632 -99767946 + L1MEc LINE L1 741 826 -5570 1612 197 13 7 chr3 127756632 127756936 -99767642 + AluJo SINE Alu 1 306 -6 806 129 31 78 chr3 127756936 127757045 -99767533 + L1MEc LINE L1 826 924 -5472 1067 138 0 0 chr3 127758108 127758253 -99766325 + AluSq SINE Alu 1 145 -167 2340 64 7 0 chr3 127758254 127758537 -99766041 + AluY SINE Alu 1 285 -26 670 163 32 8 chr3 127758638 127758761 -99765817 + AluSq SINE Alu 134 259 -54 1271 237 71 69 chr3 127760098 127760687 -99763891 - L2 LINE L2 0 3313 2739 5694 54 1 0 chr3 127761482 127762150 -99762428 + L1PA8 LINE L1 5501 6169 -3 28 48 0 0 chr3 127762263 127762305 -99762273 + AT_rich Low_complexity Low_complexity 1 42 0 308 353 25 0 chr3 127762525 127762644 -99761934 - L3 LINE CR1 -8 1569 1448 238 196 0 0 chr3 127762812 127762868 -99761710 + T-rich Low_complexity Low_complexity 1 56 0 2902 178 12 4 chr3 127763306 127763805 -99760773 - L1MB5 LINE L1 0 6174 5672 263 244 211 24 chr3 127765209 127765332 -99759246 - MER5A DNA MER1_type -3 186 41 536 327 13 0 chr3 127765431 127765581 -99758997 + L2 LINE L2 3117 3268 -4 208 311 101 42 chr3 127767632 127767751 -99756827 - L2 LINE L2 -7 3265 3140 1518 186 0 87 chr3 127768581 127768914 -99755664 - AluJo SINE Alu -6 306 3 6591 81 20 5 chr3 127768975 127770148 -99754430 - L1PA14 LINE L1 -2 6159 4987 804 198 80 0 chr3 127770435 127770622 -99753956 + L1MD3 LINE L1 7784 7985 -10 484 213 0 19 chr3 127770656 127770816 -99753762 + G-rich Low_complexity Low_complexity 5 161 0 345 284 89 80 chr3 127770857 127771082 -99753496 + MIR SINE MIR 23 249 -13 198 0 0 0 chr3 127771278 127771300 -99753278 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 2139 108 3 3 chr3 127771300 127771580 -99752998 - AluSx SINE Alu -32 280 1 466 269 183 10 chr3 127771730 127771938 -99752640 - MIR SINE MIR 0 262 19 201 350 25 0 chr3 127773312 127773392 -99751186 + MIR SINE MIR 14 95 -167 283 317 72 28 chr3 127773463 127773643 -99750935 - L2 LINE L2 -870 2444 2257 986 259 51 3 chr3 127773900 127774213 -99750365 - L1ME3A LINE L1 -215 5955 5628 384 211 46 112 chr3 127774881 127775033 -99749545 - MIR SINE MIR -11 251 110 191 292 31 0 chr3 127775226 127775291 -99749287 - MIR SINE MIR -10 252 186 385 347 151 15 chr3 127775973 127776238 -99748340 + L2 LINE L2 2969 3269 -3 354 123 0 0 chr3 127776802 127776859 -99747719 + (CA)n Simple_repeat Simple_repeat 2 58 0 1425 201 13 96 chr3 127778677 127779075 -99745503 + MLT1A1 LTR MaLR 1 365 0 456 348 38 11 chr3 127779140 127779324 -99745254 - L2 LINE L2 -227 3086 2898 205 195 0 0 chr3 127779529 127779570 -99745008 + (TA)n Simple_repeat Simple_repeat 1 41 0 27 29 0 0 chr3 127779774 127779808 -99744770 + AT_rich Low_complexity Low_complexity 1 34 0 23 0 0 0 chr3 127779915 127779938 -99744640 + AT_rich Low_complexity Low_complexity 1 23 0 5351 143 20 7 chr3 127779971 127780800 -99743778 - MER6 DNA MER2_type -6 859 20 280 275 88 0 chr3 127780985 127781076 -99743502 - MIR SINE MIR 0 262 164 469 250 39 58 chr3 127782007 127782163 -99742415 + MIR SINE MIR 34 186 -76 483 255 71 25 chr3 127782283 127782479 -99742099 - HAL1 LINE L1 -8 2499 2295 252 241 152 0 chr3 127782533 127782612 -99741966 + LTR16B LTR ERVL 1 91 -373 1166 191 92 31 chr3 127782644 127782937 -99741641 + LTR16B LTR ERVL 154 464 0 2015 293 66 25 chr3 127783095 127783983 -99740595 + HERV16 LTR ERVL 190 1114 -3882 514 269 109 10 chr3 127784039 127784240 -99740338 + HERV16 LTR ERVL 1227 1447 -3549 * 3153 276 71 19 chr3 127784236 127785280 -99739298 + HERV16 LTR ERVL 1573 2670 -2326 4626 156 19 3 chr3 127785280 127786011 -99738567 + Tigger1 DNA MER2_type 1 743 -1675 795 264 56 8 chr3 127786011 127786261 -99738317 + HAL1 LINE L1 1443 1704 -803 248 236 171 14 chr3 127786294 127786434 -99738144 - HAL1 LINE L1 -1102 1405 1244 255 221 67 58 chr3 127786932 127787036 -99737542 - MER34 LTR ERV1 0 542 438 1247 122 0 0 chr3 127787082 127787254 -99737324 + AluSg/x SINE Alu 131 302 -10 685 227 89 104 chr3 127787259 127787664 -99736914 - MER34C LTR ERV1 -160 425 27 228 302 44 71 chr3 127787858 127788110 -99736468 - HAL1 LINE L1 -2261 246 2 278 304 152 36 chr3 127788208 127788484 -99736094 + L2 LINE L2 2554 2861 -453 21 57 0 0 chr3 127788651 127788686 -99735892 + AT_rich Low_complexity Low_complexity 1 35 0 4803 109 24 3 chr3 127788686 127789354 -99735224 - L1PB1 LINE L1 -2 6149 5468 286 324 67 0 chr3 127789529 127789634 -99734944 + L2 LINE L2 3156 3267 -5 216 160 40 20 chr3 127789715 127789765 -99734813 + L2 LINE L2 3222 3272 0 242 271 153 25 chr3 127791775 127791893 -99732685 + L2 LINE L2 3140 3272 0 266 283 70 75 chr3 127792073 127792260 -99732318 + MER5A DNA MER1_type 2 187 -2 510 330 39 6 chr3 127793068 127793250 -99731328 - MIR SINE MIR -49 213 26 252 0 0 0 chr3 127794080 127794108 -99730470 + (T)n Simple_repeat Simple_repeat 1 28 0 1782 199 129 2 chr3 127794255 127794696 -99729882 - L1MD3 LINE L1 -11 7984 7488 1033 191 0 0 chr3 127794727 127794895 -99729683 - FRAM SINE Alu -12 164 1 4349 185 100 55 chr3 127794896 127795997 -99728581 - L1MC4a LINE L1 -490 7318 6168 318 189 68 0 chr3 127795989 127796063 -99728515 - L1ME1 LINE L1 -3 6163 6085 * 250 346 59 0 chr3 127796466 127796567 -99728011 - L2 LINE L2 -11 3261 3155 678 351 31 36 chr3 127796847 127797297 -99727281 - L2 LINE L2 -438 2876 2429 1959 279 83 26 chr3 127797564 127798144 -99726434 + MER45C DNA AcHobo 12 624 -329 4760 189 19 34 chr3 127798488 127800121 -99724457 - L1MB2 LINE L1 -1 6170 4563 779 206 45 20 chr3 127800148 127800347 -99724231 + L1MD2 LINE L1 6140 6343 -16 528 348 71 48 chr3 127800614 127801008 -99723570 - L2 LINE L2 -1 3271 2869 323 273 26 0 chr3 127802329 127802406 -99722172 - L1MC4 LINE L1 -1349 6693 6615 248 283 108 19 chr3 127802412 127802549 -99722029 - MIR SINE MIR -80 128 19 1773 125 14 7 chr3 127802566 127802861 -99721717 + AluY SINE Alu 1 297 -14 795 143 186 0 chr3 127802861 127803001 -99721577 + AluSg/x SINE Alu 132 297 -13 2229 92 0 7 chr3 127803677 127803983 -99720595 - AluSg SINE Alu -6 304 1 380 289 129 31 chr3 127804267 127804461 -99720117 + MIR SINE MIR 47 259 -3 695 264 88 28 chr3 127804697 127805050 -99719528 + L1ME4a LINE L1 5537 5910 -211 373 218 106 21 chr3 127805267 127805409 -99719169 + L1ME4a LINE L1 5964 6117 -4 2128 101 0 3 chr3 127806152 127806458 -99718120 + AluSx SINE Alu 1 305 -7 1771 147 7 3 chr3 127807367 127807652 -99716926 + AluSx SINE Alu 1 286 -26 25 102 0 0 chr3 127808350 127808438 -99716140 + GC_rich Low_complexity Low_complexity 1 88 0 225 221 0 0 chr3 127808899 127808967 -99715611 + (TG)n Simple_repeat Simple_repeat 2 69 0 1762 144 46 0 chr3 127813584 127813701 -99710877 + AluJb SINE Alu 1 111 -201 225 0 0 0 chr3 127813701 127813726 -99710852 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 1762 144 46 0 chr3 127813726 127813893 -99710685 + AluJb SINE Alu 111 298 -14 663 325 39 9 chr3 127815689 127815920 -99708658 - MIR SINE MIR -5 257 20 406 285 32 8 chr3 127817371 127817494 -99707084 + MIR SINE MIR 4 129 -133 1231 276 130 14 chr3 127817808 127818631 -99705947 + L2 LINE L2 2370 3288 -25 276 282 32 48 chr3 127818980 127819104 -99705474 - L2 LINE L2 -2 3270 3149 204 40 0 0 chr3 127819592 127819617 -99704961 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2340 152 23 38 chr3 127819618 127820093 -99704485 - L1MC2 LINE L1 -9 6335 5868 1839 123 9 71 chr3 127821029 127821162 -99703416 + AluSx SINE Alu 2 142 -170 2193 75 55 0 chr3 127821162 127821455 -99703123 + AluY SINE Alu 1 309 -2 1839 123 9 71 chr3 127821455 127821646 -99702932 + AluSx SINE Alu 142 306 -6 340 173 12 25 chr3 127824121 127824202 -99700376 - L1MC5 LINE L1 -50 7911 7832 592 261 6 28 chr3 127826240 127826416 -99698162 - MER5B DNA MER1_type -4 174 3 459 270 72 13 chr3 127826849 127827001 -99697577 + MIR SINE MIR 90 250 -12 573 198 16 0 chr3 127827940 127828061 -99696517 - MER103 DNA DNA -31 135 13 534 241 9 0 chr3 127828186 127828294 -99696284 - L2 LINE L2 -1 3312 3204 270 56 0 0 chr3 127828906 127828942 -99695636 + (TG)n Simple_repeat Simple_repeat 1 36 0 432 0 0 0 chr3 127829499 127829547 -99695031 + (TG)n Simple_repeat Simple_repeat 2 49 0 233 292 45 34 chr3 127830923 127831012 -99693566 + L2 LINE L2 3158 3247 -25 3129 123 0 88 chr3 127832265 127832564 -99692014 + L1PB4 LINE L1 5496 5723 -433 360 111 0 0 chr3 127832564 127832618 -99691960 + (TG)n Simple_repeat Simple_repeat 2 55 0 3129 123 0 88 chr3 127832618 127832888 -99691690 + L1PB4 LINE L1 5723 6015 -141 802 127 12 69 chr3 127833018 127833191 -99691387 + L1PB4 LINE L1 5992 6154 -2 322 311 117 10 chr3 127833360 127833566 -99691012 - MIR SINE MIR -15 247 20 471 283 44 100 chr3 127834374 127834713 -99689865 - L2 LINE L2 -8 3264 2945 606 319 16 5 chr3 127835131 127835316 -99689262 + MIR SINE MIR 2 188 -74 1294 139 115 3 chr3 127835497 127835785 -99688793 + MER33 DNA MER1_type 5 324 0 230 217 0 0 chr3 127837015 127837061 -99687517 - L2 LINE L2 0 3272 3227 239 114 23 0 chr3 127838073 127838117 -99686461 + GA-rich Low_complexity Low_complexity 1 45 0 311 248 10 40 chr3 127838421 127838522 -99686056 + GA-rich Low_complexity Low_complexity 2 99 0 2082 237 121 17 chr3 127839330 127839981 -99684597 + Charlie7 DNA MER1_type 6 724 -1888 362 272 0 40 chr3 127840004 127840129 -99684449 + Charlie7 DNA MER1_type 2493 2612 0 334 184 48 68 chr3 127840560 127840663 -99683915 - MLT1J2 LTR MaLR -283 167 67 890 211 53 21 chr3 127841017 127841207 -99683371 - MER3 DNA MER1_type 0 209 14 343 284 0 28 chr3 127841439 127841548 -99683030 + MIR SINE MIR 16 121 -87 39 0 0 0 chr3 127841626 127841665 -99682913 + AT_rich Low_complexity Low_complexity 1 39 0 245 51 0 26 chr3 127841713 127841752 -99682826 - L1MA9 LINE L1 -39 6273 6236 795 150 0 23 chr3 127841755 127841888 -99682690 - FRAM SINE Alu -12 164 35 31 26 0 0 chr3 127843113 127843151 -99681427 + AT_rich Low_complexity Low_complexity 1 38 0 237 196 0 0 chr3 127843651 127843702 -99680876 + CT-rich Low_complexity Low_complexity 3 53 0 600 233 114 25 chr3 127844034 127844236 -99680342 + MIR SINE MIR 7 226 -36 457 274 146 36 chr3 127846638 127846857 -99677721 - MIR SINE MIR 0 262 20 210 241 0 37 chr3 127848191 127848245 -99676333 + L3 LINE CR1 1525 1576 -1 195 42 0 0 chr3 127848858 127848882 -99675696 + (CAT)n Simple_repeat Simple_repeat 3 26 0 381 276 196 12 chr3 127849574 127849737 -99674841 - L1ME4a LINE L1 -79 6042 5850 926 228 124 4 chr3 127849826 127850085 -99674493 + AluJb SINE Alu 13 302 -10 307 172 273 78 chr3 127850085 127850213 -99674365 - L1ME3 LINE L1 -21 6141 5989 237 263 0 0 chr3 127850271 127850328 -99674250 - L1ME4a LINE L1 -398 5766 5710 252 298 53 26 chr3 127851790 127851941 -99672637 - MER117 DNA MER1_type -41 156 2 21 82 0 0 chr3 127851959 127852008 -99672570 + AT_rich Low_complexity Low_complexity 1 49 0 320 273 80 53 chr3 127852432 127852582 -99671996 + MIR SINE MIR 48 201 -61 284 91 91 0 chr3 127853219 127853263 -99671315 - MLT2B1 LTR ERVL 0 520 473 181 148 19 37 chr3 127853263 127853317 -99671261 + (TATATG)n Simple_repeat Simple_repeat 3 55 0 255 197 0 30 chr3 127855580 127855646 -99668932 + MER116 DNA Mariner 7 70 -10 185 258 65 16 chr3 127855737 127855799 -99668779 + L2 LINE L2 3249 3313 0 392 288 130 6 chr3 127855843 127856020 -99668558 - MIR SINE MIR -44 218 20 360 237 32 11 chr3 127856345 127856438 -99668140 + MLT1L LTR MaLR 508 602 -13 259 341 0 11 chr3 127856638 127856729 -99667849 + MIR SINE MIR 34 123 -139 735 228 22 0 chr3 127857135 127857315 -99667263 - MER5A DNA MER1_type 0 189 6 712 173 43 7 chr3 127858573 127858712 -99665866 - AluJo SINE Alu -82 230 87 1381 213 39 20 chr3 127859217 127859574 -99665004 - L1PB4 LINE L1 -12 6144 5781 529 147 2 107 chr3 127859614 127859781 -99664797 - L1PB4 LINE L1 -701 5462 5319 313 308 107 9 chr3 127860558 127860793 -99663785 + L2 LINE L2 2755 3001 -312 3290 153 16 12 chr3 127861758 127862326 -99662252 + L1MB3 LINE L1 5614 6183 0 6889 118 11 18 chr3 127862349 127863053 -99661525 + L1MA3 LINE L1 5121 5815 -490 1783 164 3 11 chr3 127863053 127863340 -99661238 + AluJo SINE Alu 1 285 -27 6889 118 11 18 chr3 127863340 127863828 -99660750 + L1MA3 LINE L1 5815 6305 0 1132 283 71 32 chr3 127863963 127864582 -99659996 + L1ME2 LINE L1 5298 5940 -224 1217 266 62 71 chr3 127864857 127864941 -99659637 + L1MC/D LINE L1 4964 5047 -1510 3645 132 35 29 chr3 127864941 127865608 -99658970 - L1MA8 LINE L1 -2 6289 5619 1217 266 62 71 chr3 127865608 127865789 -99658789 + L1MC/D LINE L1 5047 5228 -1329 2136 91 22 41 chr3 127865789 127866107 -99658471 + AluSx SINE Alu 1 312 0 1217 266 62 71 chr3 127866107 127866696 -99657882 + L1MC/D LINE L1 5228 5814 -743 447 260 0 10 chr3 127869041 127869145 -99655433 + Charlie7 DNA MER1_type 3 105 -2507 413 180 87 55 chr3 127869124 127869307 -99655271 + Charlie7 DNA MER1_type 2424 2612 0 * 364 281 50 25 chr3 127869819 127869979 -99654599 - MIR SINE MIR 0 262 99 183 343 14 14 chr3 127870095 127870168 -99654410 + MIR SINE MIR 34 106 -102 22 56 0 0 chr3 127870289 127870325 -99654253 + AT_rich Low_complexity Low_complexity 1 36 0 706 263 75 16 chr3 127870728 127870983 -99653595 + L2 LINE L2 3044 3313 0 2145 104 0 36 chr3 127870992 127871299 -99653279 + AluY SINE Alu 1 296 -15 1874 159 0 46 chr3 127871883 127872210 -99652368 - AluJb SINE Alu 0 312 1 471 252 47 0 chr3 127872231 127872358 -99652220 + MER46C DNA MER2_type 103 235 -103 1915 184 69 55 chr3 127872358 127872810 -99651768 + MER31B LTR ERV1 1 458 -8 357 179 0 15 chr3 127872837 127872904 -99651674 + MER46C DNA MER2_type 272 337 -1 9947 209 69 30 chr3 127872983 127873918 -99650660 + L1MDa LINE L1 71 969 -5571 2229 165 33 24 chr3 127873918 127874342 -99650236 + MSTA LTR MaLR 1 428 0 9947 209 69 30 chr3 127874342 127874567 -99650011 + L1MDa LINE L1 969 1184 -5356 2328 118 8 11 chr3 127874567 127874923 -99649655 + THE1A LTR MaLR 1 355 0 11576 80 15 26 chr3 127874923 127875350 -99649228 + THE1A-int LTR MaLR 1 431 -1149 192 40 0 0 chr3 127875350 127875375 -99649203 + (TG)n Simple_repeat Simple_repeat 2 26 0 2118 101 7 39 chr3 127875375 127875683 -99648895 - AluY SINE Alu -13 298 1 11576 80 15 26 chr3 127875683 127876852 -99647726 + THE1A-int LTR MaLR 429 1580 0 2452 110 8 8 chr3 127876852 127877207 -99647371 + THE1A LTR MaLR 1 355 0 9947 209 69 30 chr3 127877207 127878929 -99645649 + L1MDa LINE L1 1184 3111 -3429 2166 171 8 0 chr3 127878929 127879291 -99645287 + MER47A DNA MER2_type 1 365 -1 9947 209 69 30 chr3 127879291 127879877 -99644701 + L1MDa LINE L1 3111 3673 -2867 2261 121 0 0 chr3 127879887 127880184 -99644394 + AluSx SINE Alu 1 297 -15 1071 324 36 29 chr3 127880201 127880784 -99643794 + L1PA13 LINE L1 788 1374 -6200 395 260 0 20 chr3 127880930 127881030 -99643548 + L1PA13 LINE L1 2085 2182 -5399 4504 215 117 38 chr3 127881364 127883504 -99641074 + L1PA13 LINE L1 2571 5037 -2547 270 0 0 0 chr3 127883526 127883556 -99641022 + (TC)n Simple_repeat Simple_repeat 1 30 0 391 131 24 42 chr3 127883705 127883873 -99640705 + (TA)n Simple_repeat Simple_repeat 2 166 0 329 115 13 90 chr3 127883890 127883968 -99640610 - MLT2A1 LTR ERVL -41 403 332 1525 190 116 67 chr3 127884229 127884741 -99639837 - MLT1F LTR MaLR -6 529 1 281 212 152 0 chr3 127884824 127884923 -99639655 + MIR3 SINE MIR 94 207 -1 23 0 0 0 chr3 127885948 127885971 -99638607 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr3 127887422 127887452 -99637126 + AT_rich Low_complexity Low_complexity 1 30 0 254 352 65 29 chr3 127891650 127892034 -99632544 + L2 LINE L2 2173 2570 -744 637 323 20 0 chr3 127896686 127896887 -99627691 - MIR SINE MIR -9 253 49 369 274 147 20 chr3 127896925 127897122 -99627456 + MIR SINE MIR 29 250 -12 202 346 176 0 chr3 127902010 127902163 -99622415 + MIR SINE MIR 21 200 -62 583 241 84 18 chr3 127902642 127902808 -99621770 - MER69A DNA AcHobo 0 177 1 216 219 0 0 chr3 127903752 127903793 -99620785 + (CTAA)n Simple_repeat Simple_repeat 2 42 0 566 198 102 19 chr3 127903849 127904018 -99620560 + MIR SINE MIR 6 187 -67 371 170 113 47 chr3 127904642 127904748 -99619830 + L1ME4a LINE L1 6006 6118 -3 667 172 0 0 chr3 127904800 127904899 -99619679 - AluSg/x SINE Alu -20 292 194 1502 175 49 11 chr3 127905443 127905729 -99618849 + AluJo SINE Alu 1 297 -15 815 84 0 8 chr3 127906487 127906606 -99617972 + AluY SINE Alu 176 293 -18 280 343 49 0 chr3 127907563 127907665 -99616913 + L2 LINE L2 3149 3255 -17 272 47 0 47 chr3 127907665 127907708 -99616870 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 819 83 0 0 chr3 127908005 127908113 -99616465 + L1MA1 LINE L1 6185 6292 -10 683 239 98 6 chr3 127908464 127908627 -99615951 + MER45A DNA AcHobo 1 178 0 198 295 139 49 chr3 127911887 127912009 -99612569 - L2 LINE L2 -2 3270 3138 1916 108 0 155 chr3 127913347 127913585 -99610993 - MER1B DNA MER1_type -2373 337 184 782 21 10 0 chr3 127913585 127913681 -99610897 + (TTCTG)n Simple_repeat Simple_repeat 2 98 0 1916 108 0 155 chr3 127913681 127913841 -99610737 - MER1B DNA MER1_type -2526 184 1 282 313 189 36 chr3 127914158 127914407 -99610171 - L2 LINE L2 -17 3255 2969 22 0 0 0 chr3 127916795 127916817 -99607761 + AT_rich Low_complexity Low_complexity 1 22 0 485 181 175 41 chr3 127917268 127917439 -99607139 + MLT2C2 LTR ERVL 79 272 -192 311 326 138 40 chr3 127918056 127918635 -99605943 + L2 LINE L2 1935 2570 -744 183 337 65 11 chr3 127919206 127919298 -99605280 + MIR SINE MIR 106 202 -60 180 325 25 25 chr3 127919323 127919403 -99605175 + MIR SINE MIR 16 95 -113 720 327 24 0 chr3 127923281 127923492 -99601086 - MIR SINE MIR -3 259 44 457 269 147 20 chr3 127923525 127923722 -99600856 + MIR SINE MIR 29 250 -12 202 346 176 0 chr3 127928610 127928763 -99595815 + MIR SINE MIR 21 200 -62 596 236 91 18 chr3 127929242 127929407 -99595171 - MER69A DNA AcHobo 0 177 1 216 219 0 0 chr3 127930349 127930390 -99594188 + (CTAA)n Simple_repeat Simple_repeat 2 42 0 566 198 102 19 chr3 127930446 127930615 -99593963 + MIR SINE MIR 6 187 -67 373 170 113 47 chr3 127931238 127931344 -99593234 + L1ME4a LINE L1 6006 6118 -3 675 170 0 0 chr3 127931397 127931497 -99593081 - AluSg/x SINE Alu -19 293 194 1428 178 49 14 chr3 127932041 127932327 -99592251 + AluJo SINE Alu 1 296 -16 815 84 0 8 chr3 127933085 127933204 -99591374 + AluY SINE Alu 176 293 -18 232 329 49 0 chr3 127934162 127934244 -99590334 + L2 LINE L2 3149 3234 -38 6621 128 20 31 chr3 127934251 127935693 -99588885 + L1MA3 LINE L1 4918 6305 0 182 333 42 0 chr3 127935918 127935990 -99588588 + L2 LINE L2 2620 2694 -620 2280 143 63 48 chr3 127936301 127936507 -99588071 + MSTB1 LTR MaLR 12 214 -218 1659 130 53 18 chr3 127936507 127936792 -99587786 - AluJb SINE Alu -14 298 4 2280 143 63 48 chr3 127936792 127936998 -99587580 + MSTB1 LTR MaLR 214 430 -2 596 213 80 0 chr3 127937009 127937159 -99587419 - L1MD2 LINE L1 -2 6357 6196 550 255 62 12 chr3 127937162 127937323 -99587255 - L1MD2 LINE L1 -216 6143 5975 1426 110 50 0 chr3 127937602 127937821 -99586757 + MER30 DNA MER1_type 1 230 0 187 324 70 14 chr3 127938117 127938188 -99586390 + L2 LINE L2 3235 3309 -4 12662 102 19 10 chr3 127938521 127940270 -99584308 - HERV9 LTR ERV1 -6555 1844 79 785 108 19 25 chr3 127940270 127940417 -99584161 - LTR12 LTR ERV1 0 714 303 337 244 11 0 chr3 127940417 127940507 -99584071 - LTR30 LTR ERV1 -80 642 552 2003 142 183 53 chr3 127940508 127941259 -99583319 - pTR5 LTR ERV1 -406 2032 57 257 250 0 0 chr3 127941259 127941311 -99583267 - LTR30 LTR ERV1 -670 52 1 1302 58 39 34 chr3 127941689 127941895 -99582683 - MLT2A1 LTR ERVL -237 207 1 5981 210 14 14 chr3 127941895 127943226 -99581352 + L1 LINE L1 3612 4942 -1204 4906 121 49 11 chr3 127943219 127943701 -99580877 + L1PA16 LINE L1 5198 5720 -446 * 2514 111 11 24 chr3 127943701 127944081 -99580497 - THE1C LTR MaLR 0 375 1 4906 121 49 11 chr3 127944081 127944436 -99580142 + L1PA16 LINE L1 5720 6060 -106 29 0 0 0 chr3 127944658 127944687 -99579891 + GC_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr3 127944711 127944736 -99579842 + GC_rich Low_complexity Low_complexity 1 25 0 986 102 0 7 chr3 127944909 127945056 -99579522 - AluY SINE Alu -7 304 159 1256 247 44 5 chr3 127945073 127945461 -99579117 + L1M4 LINE L1 4528 4930 -1216 959 170 42 5 chr3 127945438 127945650 -99578928 + L1M4 LINE L1 5174 5393 -753 * 312 120 0 0 chr3 127948023 127948073 -99576505 + (A)n Simple_repeat Simple_repeat 1 50 0 361 288 20 48 chr3 127948204 127948350 -99576228 + L2 LINE L2 3172 3313 0 409 258 12 120 chr3 127951204 127951380 -99573198 - MIR SINE MIR -63 145 33 455 205 53 86 chr3 127951718 127951869 -99572709 - MER91B DNA MER1_type -27 163 18 549 262 43 0 chr3 127952496 127952637 -99571941 + MIR3 SINE MIR 62 208 0 2224 110 3 0 chr3 127953281 127953573 -99571005 - AluSc SINE Alu -14 295 3 309 157 72 0 chr3 127954347 127954430 -99570148 + GA-rich Low_complexity Low_complexity 3 91 0 831 282 53 63 chr3 127954434 127954958 -99569620 + L1MEc LINE L1 362 880 -5841 2189 256 49 11 chr3 127955020 127955938 -99568640 + L1MEc LINE L1 2990 3942 -2598 811 171 22 52 chr3 127955942 127956209 -99568369 + L1MEc LINE L1 2441 2741 -3890 3173 239 55 44 chr3 127956210 127957304 -99567274 + L1MEc LINE L1 4444 5557 -983 1958 155 23 0 chr3 127957304 127957608 -99566970 + AluSx SINE Alu 1 311 -1 3173 239 55 44 chr3 127957608 127957842 -99566736 + L1MEc LINE L1 5557 5787 -753 10033 153 54 9 chr3 127957884 127959700 -99564878 - HUERS-P2 LTR ERV1 -978 2110 213 383 183 0 24 chr3 127959726 127959808 -99564770 - HUERS-P2 LTR ERV1 -2961 127 48 4282 115 70 56 chr3 127959847 127960619 -99563959 - LTR1 LTR ERV1 -2 783 1 277 250 37 0 chr3 127960691 127960799 -99563779 + L1M4 LINE L1 4983 5094 -1052 1785 159 0 0 chr3 127961381 127961688 -99562890 + AluSx SINE Alu 9 315 0 2114 151 0 3 chr3 127961723 127962034 -99562544 - AluSx SINE Alu -2 310 1 1140 247 74 6 chr3 127962036 127962556 -99562022 - L1 LINE L1 -3542 2840 2271 9873 152 25 5 chr3 127962719 127964373 -99560205 + L1M1 LINE L1 16 1702 -5863 10455 175 28 5 chr3 127964377 127966875 -99557703 + L1M1 LINE L1 3288 5848 -1717 244 186 50 11 chr3 127968565 127968756 -99555822 + (TA)n Simple_repeat Simple_repeat 1 198 0 6625 98 6 4 chr3 127969421 127970401 -99554177 + Harlequin LTR ERV1 1991 2972 -5427 4547 113 24 67 chr3 127970400 127971612 -99552966 + Harlequin LTR ERV1 703 4978 -3421 * 1079 64 6 0 chr3 127971618 127971774 -99552804 + Harlequin LTR ERV1 1584 1740 -5156 * 5325 94 10 0 chr3 127971771 127972538 -99552040 + Harlequin LTR ERV1 7625 8399 0 248 231 0 0 chr3 127972538 127972590 -99551988 + LTR30 LTR ERV1 1 52 -670 1111 60 280 0 chr3 127972590 127972772 -99551806 + LTR12 LTR ERV1 53 285 -429 335 194 0 0 chr3 127972773 127972845 -99551733 + LTR30 LTR ERV1 553 624 -98 728 143 29 9 chr3 127972845 127972977 -99551601 + LTR12 LTR ERV1 175 480 -234 338 274 43 46 chr3 127973002 127973347 -99551231 + L1M2 LINE L1 5152 5497 -747 405 0 0 0 chr3 127973922 127973967 -99550611 + (CA)n Simple_repeat Simple_repeat 2 46 0 1463 213 47 29 chr3 127974228 127974636 -99549942 + L1ME3 LINE L1 349 763 -5633 915 147 54 5 chr3 127974637 127974821 -99549757 + L1PBa LINE L1 3 195 -6668 * 3601 116 223 18 chr3 127974806 127975528 -99549050 + L1PBa LINE L1 620 1489 -5374 1243 52 12 17 chr3 127975528 127975700 -99548878 + L1PB1 LINE L1 5981 6151 0 2119 100 0 7 chr3 127975707 127975986 -99548592 + AluSg1 SINE Alu 1 277 -32 1101 27 8 0 chr3 127975986 127976249 -99548329 + L1PA6 LINE L1 5793 6152 -2 539 214 77 25 chr3 127976255 127976451 -99548127 + L1ME3 LINE L1 738 943 -5453 32 26 0 0 chr3 127976487 127976526 -99548052 + AT_rich Low_complexity Low_complexity 1 39 0 328 233 128 30 chr3 127976544 127976677 -99547901 + HAL1 LINE L1 2226 2371 -136 31 0 0 0 chr3 127976712 127976743 -99547835 + AT_rich Low_complexity Low_complexity 1 31 0 1207 280 147 2 chr3 127976788 127977346 -99547232 + L1ME3 LINE L1 4643 5281 -934 246 128 0 0 chr3 127977367 127977406 -99547172 + (CA)n Simple_repeat Simple_repeat 2 40 0 2463 229 103 26 chr3 127977473 127977688 -99546890 + L1ME3 LINE L1 5323 5520 -711 2077 155 42 65 chr3 127977688 127978166 -99546412 + MLT1C LTR MaLR 1 467 0 2463 229 103 26 chr3 127978166 127978786 -99545792 + L1ME3 LINE L1 5520 6222 -9 29 84 0 0 chr3 127978924 127978995 -99545583 + AT_rich Low_complexity Low_complexity 1 71 0 298 279 12 29 chr3 127981336 127981508 -99543070 + T-rich Low_complexity Low_complexity 5 173 0 21 36 0 0 chr3 127981935 127981963 -99542615 + AT_rich Low_complexity Low_complexity 1 28 0 39 22 0 0 chr3 127981983 127982029 -99542549 + AT_rich Low_complexity Low_complexity 1 46 0 25 65 0 0 chr3 127982060 127982106 -99542472 + AT_rich Low_complexity Low_complexity 1 46 0 28 29 0 0 chr3 127985006 127985041 -99539537 + AT_rich Low_complexity Low_complexity 1 35 0 2329 76 0 13 chr3 127985063 127985367 -99539211 - AluY SINE Alu -11 300 1 21 36 0 0 chr3 127988101 127988129 -99536449 + AT_rich Low_complexity Low_complexity 1 28 0 634 227 29 17 chr3 127988284 127988456 -99536122 - MER5B DNA MER1_type 0 178 5 988 167 11 0 chr3 127989976 127990150 -99534428 + MLT1B LTR MaLR 1 176 -214 35822 87 8 8 chr3 127990165 127996310 -99528268 + L1PA6 LINE L1 11 6153 -1 1094 150 13 43 chr3 127996311 127996545 -99528033 + MLT1B LTR MaLR 164 390 0 342 0 0 0 chr3 127997932 127997970 -99526608 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 367 77 123 0 chr3 127997970 127998035 -99526543 - L1PA3 LINE L1 -13 6142 6070 2286 171 25 54 chr3 127998111 127998202 -99526376 + L1MB2 LINE L1 5663 5755 -416 1609 216 0 3 chr3 127998202 127998503 -99526075 - AluSx SINE Alu -12 300 1 2286 171 25 54 chr3 127998503 127998932 -99525646 + L1MB2 LINE L1 5755 6168 -3 478 322 22 35 chr3 127998952 127999182 -99525396 + L1MEd LINE L1 1074 1300 -4905 760 170 39 26 chr3 127999245 127999398 -99525180 + AluJb SINE Alu 138 292 -20 389 241 78 52 chr3 127999434 127999741 -99524837 + L1MEd LINE L1 2086 2400 -3996 2041 302 179 16 chr3 127999746 128000878 -99523700 - L2 LINE L2 -853 2461 1145 746 316 113 0 chr3 128000937 128001149 -99523429 + MIR SINE MIR 2 237 -25 305 161 16 0 chr3 128001152 128001214 -99523364 + MER53 DNA DNA 3 65 -124 2157 105 3 3 chr3 128001227 128001512 -99523066 - AluSc SINE Alu -24 285 1 462 175 0 0 chr3 128001604 128001684 -99522894 - FLAM_A SINE Alu -10 132 53 227 279 13 13 chr3 128002283 128002362 -99522216 + MLT1L LTR MaLR 1 79 -536 291 114 0 0 chr3 128002954 128002998 -99521580 + (TCC)n Simple_repeat Simple_repeat 3 46 0 1168 73 0 73 chr3 128003598 128003789 -99520789 - L1PA3 LINE L1 0 6155 5979 964 182 0 0 chr3 128003997 128004156 -99520422 - FRAM SINE Alu -7 159 1 217 313 50 25 chr3 128004318 128004398 -99520180 + L2 LINE L2 3183 3264 -49 22 0 0 0 chr3 128004685 128004707 -99519871 + AT_rich Low_complexity Low_complexity 1 22 0 22 106 0 0 chr3 128004773 128004858 -99519720 + AT_rich Low_complexity Low_complexity 1 85 0 433 359 68 15 chr3 128005022 128005287 -99519291 + L2 LINE L2 2071 2349 -965 427 286 19 39 chr3 128005300 128005454 -99519124 - L2 LINE L2 -5 3308 3158 23 33 0 0 chr3 128005546 128005576 -99519002 + AT_rich Low_complexity Low_complexity 1 30 0 1588 341 79 54 chr3 128005670 128006745 -99517833 - L2 LINE L2 -1120 2194 1147 1705 168 47 41 chr3 128006745 128007108 -99517470 - MLT1A1 LTR MaLR 0 365 1 1588 341 79 54 chr3 128007108 128007326 -99517252 - L2 LINE L2 -2167 1147 936 2417 35 0 0 chr3 128007326 128007610 -99516968 - L1PA7 LINE L1 -13 6141 5858 2246 106 0 7 chr3 128007620 128007922 -99516656 - AluY SINE Alu -11 300 1 1588 341 79 54 chr3 128007922 128007958 -99516620 - L2 LINE L2 -2386 928 894 2015 152 23 38 chr3 128007958 128008354 -99516224 + MLT1B LTR MaLR 1 390 0 1588 341 79 54 chr3 128008354 128008480 -99516098 - L2 LINE L2 -2420 894 773 2600 111 0 11 chr3 128008480 128008848 -99515730 + THE1B LTR MaLR 1 364 0 1588 341 79 54 chr3 128008848 128009013 -99515565 - L2 LINE L2 -2541 773 519 1566 250 67 20 chr3 128009067 128009199 -99515379 - L1 LINE L1 -3414 2968 2844 1648 139 21 35 chr3 128009199 128009509 -99515069 - AluSx SINE Alu 0 306 1 1566 250 67 20 chr3 128009509 128010031 -99514547 - L1 LINE L1 -3538 2844 2271 10484 152 25 5 chr3 128010184 128011847 -99512731 + L1MA3 LINE L1 8 1702 -5863 15686 156 23 21 chr3 128011851 128016274 -99508304 + L1MA3 LINE L1 3288 7724 0 2198 148 63 48 chr3 128016883 128017089 -99507489 + MSTB1 LTR MaLR 12 214 -218 1747 130 53 18 chr3 128017089 128017374 -99507204 - AluJb SINE Alu -14 298 4 2198 148 63 48 chr3 128017374 128017580 -99506998 + MSTB1 LTR MaLR 214 430 -2 584 214 62 0 chr3 128017596 128017741 -99506837 - L1MD2 LINE L1 -10 6349 6196 544 255 62 12 chr3 128017744 128017905 -99506673 - L1MD2 LINE L1 -216 6143 5975 1408 110 50 0 chr3 128018184 128018403 -99506175 + MER30 DNA MER1_type 1 230 0 181 338 70 14 chr3 128018699 128018770 -99505808 + L2 LINE L2 3235 3309 -4 520 293 110 104 chr3 128020505 128021531 -99503047 - L2 LINE L2 -12 3260 2239 343 272 151 48 chr3 128021664 128021936 -99502642 - L2 LINE L2 -5 3308 3009 724 257 4 68 chr3 128022358 128022376 -99502202 + L2 LINE L2 3080 3098 -215 2346 200 60 26 chr3 128022376 128022945 -99501633 + MLT1G LTR MaLR 3 590 0 724 257 4 68 chr3 128022945 128023175 -99501403 + L2 LINE L2 3098 3312 -1 24 53 0 0 chr3 128023577 128023615 -99500963 + AT_rich Low_complexity Low_complexity 1 38 0 478 286 32 42 chr3 128024345 128024534 -99500044 + MIR SINE MIR 20 206 -56 21 57 0 0 chr3 128024960 128024995 -99499583 + AT_rich Low_complexity Low_complexity 1 35 0 302 326 53 16 chr3 128026407 128026594 -99497984 + L3 LINE CR1 692 885 -692 257 235 59 12 chr3 128027694 128027779 -99496799 - L1ME4a LINE L1 -59 6062 5974 393 236 47 9 chr3 128028117 128028223 -99496355 - MIR SINE MIR -6 256 147 229 328 0 0 chr3 128028267 128028325 -99496253 + MER91B DNA MER1_type 139 196 0 467 258 133 0 chr3 128028325 128028445 -99496133 - MIR SINE MIR -106 156 21 309 297 0 0 chr3 128028469 128028560 -99496018 + MER103 DNA DNA 29 119 -47 2276 39 0 0 chr3 128029938 128030197 -99494381 + AluY SINE Alu 38 296 -15 453 240 13 87 chr3 128030712 128030845 -99493733 - L2 LINE L2 0 3313 3191 936 207 34 29 chr3 128030845 128031053 -99493525 - MER3 DNA MER1_type 0 209 1 453 240 13 87 chr3 128031053 128031069 -99493509 - L2 LINE L2 -122 3191 3175 574 247 167 0 chr3 128031088 128031250 -99493328 + MIR SINE MIR 72 260 -2 211 299 60 0 chr3 128031853 128031920 -99492658 + MIR SINE MIR 4 74 -188 2299 93 7 0 chr3 128032141 128032441 -99492137 + AluSp SINE Alu 1 302 -11 21 36 0 0 chr3 128032517 128032545 -99492033 + AT_rich Low_complexity Low_complexity 1 28 0 207 0 0 0 chr3 128032565 128032588 -99491990 + (A)n Simple_repeat Simple_repeat 1 23 0 3401 137 9 9 chr3 128033168 128033723 -99490855 + MER41B LTR ERV1 1 555 -80 6070 55 21 1 chr3 128033723 128034517 -99490061 - L1PA5 LINE L1 -15 6139 5330 8986 64 15 1 chr3 128034656 128036472 -99488106 - L1PA5 LINE L1 -51 6103 4264 1997 52 8 0 chr3 128036470 128036719 -99487859 + L1PA5 LINE L1 4002 4252 -1894 * 585 168 28 0 chr3 128036719 128036826 -99487752 + MER41A LTR ERV1 445 554 0 21302 103 9 5 chr3 128036850 128040836 -99483742 - L1PA8A LINE L1 -13 6118 2120 271 222 0 0 chr3 128040836 128040890 -99483688 + MLT2B3 LTR ERVL 495 548 -6 622 177 4 226 chr3 128041331 128041574 -99483004 - MER5A DNA MER1_type 0 189 1 595 210 13 57 chr3 128042074 128042231 -99482347 - MIR SINE MIR -65 197 48 302 115 16 0 chr3 128042470 128042531 -99482047 + (TTTA)n Simple_repeat Simple_repeat 3 64 0 1920 128 17 7 chr3 128042540 128042829 -99481749 - AluSx SINE Alu -20 292 1 2204 112 3 13 chr3 128043133 128043446 -99481132 - AluSg SINE Alu 0 310 1 27 49 0 0 chr3 128043496 128043537 -99481041 + AT_rich Low_complexity Low_complexity 1 41 0 293 262 56 9 chr3 128044181 128044288 -99480290 + MIR SINE MIR 82 193 -69 186 43 0 0 chr3 128044833 128044856 -99479722 + (TAAA)n Simple_repeat Simple_repeat 3 25 0 195 162 0 0 chr3 128045367 128045404 -99479174 + (TG)n Simple_repeat Simple_repeat 1 37 0 5383 140 38 0 chr3 128045429 128046278 -99478300 + L1PA16 LINE L1 5128 6020 -146 180 0 0 0 chr3 128046278 128046298 -99478280 + (GGGA)n Simple_repeat Simple_repeat 4 23 0 5383 140 38 0 chr3 128046298 128046434 -99478144 + L1PA16 LINE L1 6020 6149 -17 21 0 0 0 chr3 128046964 128046985 -99477593 + AT_rich Low_complexity Low_complexity 1 21 0 316 277 59 20 chr3 128047411 128047512 -99477066 + L2 LINE L2 3168 3272 0 1758 156 0 75 chr3 128047548 128047882 -99476696 - AluJb SINE Alu -3 309 1 2397 127 41 0 chr3 128048168 128048555 -99476023 - MER57A LTR ERV1 0 403 1 2219 97 0 0 chr3 128048598 128048902 -99475676 + AluSg SINE Alu 1 304 0 386 353 95 42 chr3 128048959 128049242 -99475336 + L3 LINE CR1 1218 1515 -62 984 217 4 26 chr3 128050289 128050515 -99474063 - MER58A DNA MER1_type -3 221 1 21 0 0 0 chr3 128050721 128050742 -99473836 + AT_rich Low_complexity Low_complexity 1 21 0 2795 91 3 3 chr3 128050748 128051123 -99473455 + THE1C LTR MaLR 1 375 0 37 39 0 0 chr3 128053516 128053567 -99471011 + AT_rich Low_complexity Low_complexity 1 51 0 1418 219 32 46 chr3 128053663 128054312 -99470266 - L1MEc LINE L1 -3603 2612 2020 1568 232 90 29 chr3 128054343 128055306 -99469272 + L1M4 LINE L1 2557 3649 -2497 331 314 29 0 chr3 128056458 128056560 -99468018 - MIR SINE MIR -122 140 36 815 254 152 55 chr3 128056818 128057582 -99466996 - HAL1 LINE L1 0 2507 1670 2416 110 0 0 chr3 128057590 128057900 -99466678 + AluSq SINE Alu 1 310 -3 22 0 0 0 chr3 128057936 128057958 -99466620 + AT_rich Low_complexity Low_complexity 1 22 0 321 361 103 56 chr3 128058508 128058829 -99465749 - L2 LINE L2 -15 3257 2922 374 231 82 30 chr3 128058969 128059103 -99465475 - L3 LINE CR1 -268 1309 1169 680 198 0 0 chr3 128059522 128059638 -99464940 + AluJo SINE Alu 3 118 -194 2400 105 6 6 chr3 128059638 128059990 -99464588 - THE1C LTR MaLR -4 371 20 1193 146 24 19 chr3 128059990 128060195 -99464383 + AluJo SINE Alu 97 302 -10 279 79 0 0 chr3 128060293 128060331 -99464247 + (TG)n Simple_repeat Simple_repeat 2 39 0 225 156 31 16 chr3 128060361 128060425 -99464153 + CT-rich Low_complexity Low_complexity 1 65 0 208 196 71 54 chr3 128060853 128060909 -99463669 - L2 LINE L2 -48 3224 3168 1363 275 35 15 chr3 128061275 128061675 -99462903 - MLT1E2 LTR MaLR -4 622 215 369 290 169 6 chr3 128062302 128062485 -99462093 + MIR SINE MIR 29 241 -21 * 395 202 0 24 chr3 128062453 128062537 -99462041 - MER5B DNA MER1_type -5 173 92 255 247 136 12 chr3 128062668 128062749 -99461829 - L3 LINE CR1 -1 1576 1486 503 313 111 19 chr3 128062770 128062978 -99461600 + MIR SINE MIR 2 228 -34 833 255 113 23 chr3 128063039 128063349 -99461229 - L3 LINE CR1 -95 1482 1145 2801 121 18 22 chr3 128063659 128064106 -99460472 + MER65A LTR ERV1 1 445 0 465 235 26 9 chr3 128064389 128064504 -99460074 - MIR SINE MIR 0 262 146 2034 96 11 0 chr3 128064524 128064805 -99459773 - AluSx SINE Alu -28 284 1 499 247 107 11 chr3 128065390 128065568 -99459010 - MIR SINE MIR -7 255 61 1338 176 59 7 chr3 128066571 128066925 -99457653 + L1ME LINE L1 5239 5610 -554 478 280 82 6 chr3 128066966 128067148 -99457430 + L1ME1 LINE L1 5967 6162 -4 490 292 148 14 chr3 128067577 128067793 -99456785 - MIR SINE MIR -15 247 3 445 260 19 82 chr3 128067837 128068045 -99456533 + MIR SINE MIR 53 247 -15 784 264 132 0 chr3 128068126 128068323 -99456255 + MIR SINE MIR 23 245 -17 2152 142 3 0 chr3 128068662 128068965 -99455613 + AluSx SINE Alu 1 304 -8 2687 90 3 0 chr3 128071310 128071664 -99452914 + THE1A LTR MaLR 1 355 0 1442 156 28 28 chr3 128071664 128071946 -99452632 - L1MC2 LINE L1 -13 6331 6050 199 374 39 45 chr3 128072028 128072183 -99452395 + MIR SINE MIR 1 154 -108 23 0 0 0 chr3 128072444 128072467 -99452111 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 128072586 128072608 -99451970 + AT_rich Low_complexity Low_complexity 1 22 0 384 254 39 31 chr3 128073419 128073549 -99451029 + MIR SINE MIR 76 206 -56 329 251 55 75 chr3 128073623 128073822 -99450756 + L2 LINE L2 3109 3303 -10 180 256 70 0 chr3 128074013 128074056 -99450522 - L3 LINE CR1 -11 1566 1521 202 268 155 0 chr3 128074588 128074659 -99449919 + MIR SINE MIR 38 119 -89 2060 78 0 0 chr3 128075024 128075281 -99449297 - AluY SINE Alu -15 296 40 180 0 0 0 chr3 128075910 128075930 -99448648 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 623 211 204 0 chr3 128076674 128076816 -99447762 + MER5A DNA MER1_type 9 179 -10 2139 129 0 0 chr3 128076846 128077140 -99447438 + AluSx SINE Alu 1 294 -18 2451 90 0 0 chr3 128077142 128077443 -99447135 + AluSg SINE Alu 1 301 -9 22 0 0 0 chr3 128077553 128077575 -99447003 + AT_rich Low_complexity Low_complexity 1 22 0 246 225 25 88 chr3 128078680 128078760 -99445818 - L2 LINE L2 -216 3097 3023 260 59 0 0 chr3 128078837 128078871 -99445707 + MER65B LTR ERV1 1 34 -497 2054 127 0 23 chr3 128078871 128079179 -99445399 + AluSq SINE Alu 1 301 -12 1996 144 53 3 chr3 128079240 128079601 -99444977 + MER65A LTR ERV1 47 425 -20 190 333 32 0 chr3 128079737 128079800 -99444778 - L2 LINE L2 -1522 1792 1728 278 226 16 0 chr3 128079805 128079867 -99444711 + MER3 DNA MER1_type 28 90 -119 * 1143 173 0 0 chr3 128079830 128080032 -99444546 - MER3 DNA MER1_type -6 203 2 488 317 36 15 chr3 128080368 128080562 -99444016 - MIR3 SINE MIR -8 200 2 22 56 0 0 chr3 128081366 128081402 -99443176 + AT_rich Low_complexity Low_complexity 1 36 0 1403 155 4 4 chr3 128082094 128082320 -99442258 - AluJb SINE Alu -3 309 84 9442 59 113 2 chr3 128082617 128083860 -99440718 + SVA Other Other 2 1381 -5 300 27 0 0 chr3 128083863 128083900 -99440678 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 2343 93 0 0 chr3 128084034 128084335 -99440243 + AluSg SINE Alu 2 302 -8 362 288 34 0 chr3 128084410 128084528 -99440050 + L1ME LINE L1 5632 5753 -368 567 244 49 47 chr3 128084662 128084892 -99439686 + MIR SINE MIR 23 246 -16 22 0 0 0 chr3 128085643 128085665 -99438913 + AT_rich Low_complexity Low_complexity 1 22 0 240 242 15 0 chr3 128085704 128085770 -99438808 + (TA)n Simple_repeat Simple_repeat 1 67 0 1112 270 102 17 chr3 128086293 128086697 -99437881 + L2 LINE L2 2239 2676 -638 2004 212 127 8 chr3 128086701 128087205 -99437373 + MER119 DNA MER1_type 6 569 -14 1623 246 69 22 chr3 128087214 128087828 -99436750 + L2 LINE L2 2661 3309 -4 2262 161 46 30 chr3 128087854 128088218 -99436360 + L1MB7 LINE L1 5649 6025 -159 2339 94 0 0 chr3 128088218 128088516 -99436062 + AluY SINE Alu 1 298 -13 2262 161 46 30 chr3 128088516 128088654 -99435924 + L1MB7 LINE L1 6025 6159 -25 2050 153 7 0 chr3 128088678 128088986 -99435592 - AluJo SINE Alu -2 310 1 1948 140 20 0 chr3 128089256 128089548 -99435030 + AluJb SINE Alu 1 298 -14 216 390 99 7 chr3 128089799 128089940 -99434638 + L2 LINE L2 3098 3251 -21 2292 90 0 17 chr3 128090755 128091055 -99433523 + AluSc SINE Alu 1 295 -14 1867 155 0 20 chr3 128091194 128091491 -99433087 + AluJb SINE Alu 1 291 -21 2111 108 0 32 chr3 128091717 128092032 -99432546 - AluSx SINE Alu -7 305 1 21 0 0 0 chr3 128092049 128092070 -99432508 + AT_rich Low_complexity Low_complexity 1 21 0 210 204 5 78 chr3 128093704 128093895 -99430683 + (TATAA)n Simple_repeat Simple_repeat 1 177 0 * 301 225 53 0 chr3 128093757 128093926 -99430652 + (TA)n Simple_repeat Simple_repeat 2 179 0 * 326 169 12 66 chr3 128093844 128094010 -99430568 + (TTATA)n Simple_repeat Simple_repeat 5 161 0 1885 188 55 174 chr3 128094562 128095536 -99429042 + MLT1D-int LTR MaLR 456 1313 -58 828 194 137 139 chr3 128095562 128096045 -99428533 + MLT1D LTR MaLR 3 343 -22 42217 37 2 2 chr3 128096230 128102378 -99422200 + L1PA3 LINE L1 2 6152 -3 425 259 65 93 chr3 128102470 128102962 -99421616 + L1MDa LINE L1 2359 2833 -3707 629 305 82 35 chr3 128103052 128103413 -99421165 + L1MDa LINE L1 2891 3233 -3307 5814 27 0 0 chr3 128103413 128104087 -99420491 - L1PA3 LINE L1 -7 6148 5475 629 305 82 35 chr3 128104087 128105143 -99419435 + L1MDa LINE L1 3233 4385 -2155 603 198 66 54 chr3 128105156 128105323 -99419255 + AluJb SINE Alu 129 297 -15 402 316 68 26 chr3 128105376 128105835 -99418743 + L1MDa LINE L1 4413 4890 -1650 19836 82 22 3 chr3 128105847 128109409 -99415169 - L1PA7 LINE L1 0 6154 2538 4688 123 9 25 chr3 128109409 128110143 -99414435 + L1P3 LINE L1 217 939 -5522 263 291 13 0 chr3 128110139 128110218 -99414360 + L1MDa LINE L1 4892 4971 -1569 * 1032 80 47 0 chr3 128110221 128110371 -99414207 + L1PA10 LINE L1 5787 5943 -225 1261 130 10 0 chr3 128110373 128110565 -99414013 + AluSg/x SINE Alu 110 303 -7 198 0 0 0 chr3 128110642 128110664 -99413914 + (TA)n Simple_repeat Simple_repeat 2 23 0 1888 58 18 0 chr3 128110664 128110939 -99413639 + L1P LINE L1 3019 3298 -2848 408 231 105 14 chr3 128111050 128111109 -99413469 + L1MC4a LINE L1 5834 5886 -1922 577 119 59 0 chr3 128111109 128111210 -99413368 + L1MA5A LINE L1 6190 6296 -1 408 231 105 14 chr3 128111210 128111293 -99413285 + L1MC4a LINE L1 5886 5989 -1819 198 0 0 0 chr3 128111294 128111316 -99413262 + (TA)n Simple_repeat Simple_repeat 2 23 0 1697 225 203 89 chr3 128111653 128111702 -99412876 + L1MC4 LINE L1 5844 5886 -2007 572 105 63 0 chr3 128111702 128111797 -99412781 + L1MA5A LINE L1 6190 6290 -7 1697 225 203 89 chr3 128111797 128111888 -99412690 + L1MC4 LINE L1 5886 5965 -1928 198 0 0 0 chr3 128111888 128111910 -99412668 + (TA)n Simple_repeat Simple_repeat 2 23 0 1697 225 203 89 chr3 128111910 128112764 -99411814 + L1MC4 LINE L1 5965 7037 -856 * 1905 219 37 51 chr3 128112734 128113327 -99411251 + L1MC4 LINE L1 7307 7891 -151 2183 121 17 22 chr3 128113346 128113701 -99410877 + L1PB3 LINE L1 5717 6069 -85 354 242 8 47 chr3 128113744 128113872 -99410706 + L1MC4 LINE L1 7920 8042 0 426 340 133 19 chr3 128114126 128114589 -99409989 + L2 LINE L2 1469 2012 -1302 1967 150 0 7 chr3 128114589 128114895 -99409683 + AluJb SINE Alu 1 304 -8 426 340 133 19 chr3 128114895 128115010 -99409568 + L2 LINE L2 2012 2113 -1201 194 129 0 0 chr3 128115053 128115084 -99409494 + MIR SINE MIR 232 262 0 605 327 130 32 chr3 128115220 128115385 -99409193 + L2 LINE L2 2147 2295 -1019 1977 163 0 0 chr3 128115385 128115685 -99408893 + AluJb SINE Alu 1 300 -12 605 327 130 32 chr3 128115685 128116167 -99408411 + L2 LINE L2 2295 2857 -457 197 328 17 0 chr3 128116258 128116316 -99408262 - MIR3 SINE MIR -49 159 101 2555 45 0 16 chr3 128116364 128116675 -99407903 + AluY SINE Alu 1 306 -5 347 280 52 88 chr3 128117631 128117824 -99406754 - MIR SINE MIR -7 255 70 517 262 41 0 chr3 128117891 128118013 -99406565 + MIR SINE MIR 36 162 -100 838 212 76 5 chr3 128118439 128118637 -99405941 - MIR SINE MIR 0 262 51 382 204 91 136 chr3 128119340 128119391 -99405187 + MER112 DNA MER1_type 2 54 -202 2744 10 0 0 chr3 128119391 128119690 -99404888 + AluYa5 SINE Alu 1 299 -12 382 204 91 136 chr3 128119690 128119903 -99404675 + MER112 DNA MER1_type 54 254 -2 1441 67 80 54 chr3 128120988 128121212 -99403366 - MER30 DNA MER1_type 0 230 1 419 284 77 0 chr3 128121827 128121982 -99402596 + L1MC4a LINE L1 5574 5740 -2068 398 317 130 10 chr3 128122075 128122283 -99402295 + MLT1J LTR MaLR 105 337 -174 380 256 80 7 chr3 128122406 128122543 -99402035 + L1MC4a LINE L1 5734 5880 -1928 378 322 9 9 chr3 128122567 128122682 -99401896 + MER5B DNA MER1_type 5 119 -59 195 42 0 0 chr3 128122708 128122732 -99401846 + (GA)n Simple_repeat Simple_repeat 2 25 0 1211 108 54 0 chr3 128122733 128122900 -99401678 - AluSg/x SINE Alu -8 302 127 2087 101 27 24 chr3 128122905 128123201 -99401377 - AluSq SINE Alu -16 297 1 242 145 0 145 chr3 128123210 128123272 -99401306 + MER5B DNA MER1_type 125 177 -1 501 289 78 15 chr3 128124131 128124322 -99400256 - MIR SINE MIR -37 225 16 411 171 13 13 chr3 128124885 128124961 -99399617 - MER112 DNA MER1_type -7 253 178 553 284 32 40 chr3 128125403 128125776 -99398802 + L1MC5 LINE L1 7558 7927 -34 2973 197 23 9 chr3 128126025 128127113 -99397465 + L1MB7 LINE L1 4729 5831 -353 1427 149 9 0 chr3 128127119 128127347 -99397231 + AluJb SINE Alu 1 230 -82 1816 180 15 0 chr3 128127353 128127710 -99396868 + L1MB7 LINE L1 5833 6194 0 21 57 0 0 chr3 128128275 128128310 -99396268 + AT_rich Low_complexity Low_complexity 1 35 0 2158 130 3 0 chr3 128128676 128128983 -99395595 + AluSq SINE Alu 1 308 -5 400 294 39 0 chr3 128129145 128129247 -99395331 - MER91C DNA MER1_type -34 106 1 768 131 0 83 chr3 128129470 128129615 -99394963 + FLAM_A SINE Alu 1 133 0 451 263 89 36 chr3 128129842 128130066 -99394512 + MARNA DNA Mariner 243 478 -108 569 157 143 189 chr3 128130071 128130288 -99394290 + MER8 DNA MER2_type 33 239 0 1696 166 7 24 chr3 128130646 128130941 -99393637 + AluJo SINE Alu 1 290 -22 799 214 48 11 chr3 128132761 128132948 -99391630 - MIR SINE MIR -6 256 63 4394 165 59 4 chr3 128132973 128134279 -99390299 + L1MB7 LINE L1 4802 6183 -1 319 206 198 0 chr3 128134393 128134519 -99390059 + L1ME4a LINE L1 5781 5931 -190 354 240 53 0 chr3 128134606 128134681 -99389897 + MIR SINE MIR 1 79 -183 2067 125 46 25 chr3 128134724 128135091 -99389487 + THE1C LTR MaLR 1 375 0 6419 87 10 2 chr3 128135183 128136809 -99387769 + L1PA10 LINE L1 4531 6165 -3 251 261 43 43 chr3 128136838 128136930 -99387648 - MIR SINE MIR -134 128 37 815 241 12 6 chr3 128137085 128137251 -99387327 + MLT1E1 LTR MaLR 466 632 -22 2444 82 3 0 chr3 128137426 128137731 -99386847 - AluSg SINE Alu -4 306 1 267 259 71 12 chr3 128137862 128137947 -99386631 - L2 LINE L2 -5 3308 3219 1667 164 13 32 chr3 128138156 128138466 -99386112 + AluJo SINE Alu 8 311 -1 330 342 64 76 chr3 128138808 128139150 -99385428 - L2 LINE L2 -1 3271 2934 264 305 150 18 chr3 128139194 128139361 -99385217 - L2 LINE L2 -474 2840 2652 181 296 204 39 chr3 128139560 128139790 -99384788 + L2 LINE L2 2898 3165 -107 2527 46 0 0 chr3 128140363 128140669 -99383909 + AluY SINE Alu 1 306 -5 1661 172 7 0 chr3 128140795 128141068 -99383510 + AluJb SINE Alu 24 298 -14 227 292 154 12 chr3 128141242 128141472 -99383106 - L2 LINE L2 -242 3030 2778 1276 285 90 0 chr3 128141662 128142086 -99382492 + L2 LINE L2 1035 1496 -1818 371 240 86 52 chr3 128142090 128142323 -99382255 + L1ME1 LINE L1 1435 1874 -913 2311 114 0 0 chr3 128142329 128142627 -99381951 - AluSx SINE Alu -14 298 1 2467 225 59 26 chr3 128142627 128143602 -99380976 + L1ME1 LINE L1 2195 3170 -3256 1381 187 45 72 chr3 128143602 128143977 -99380601 + MLT1A1 LTR MaLR 1 365 0 1182 175 234 19 chr3 128143977 128144297 -99380281 + MLT1A1-int LTR MaLR 1 389 -1346 4880 210 36 38 chr3 128144303 128144625 -99379953 + L1ME1 LINE L1 4212 4533 -1913 902 135 0 0 chr3 128144625 128144758 -99379820 + FLAM_C SINE Alu 1 133 0 4880 210 36 38 chr3 128144758 128144852 -99379726 + L1ME1 LINE L1 4533 4626 -1820 2306 101 0 0 chr3 128144852 128145148 -99379430 + AluSx SINE Alu 1 296 -16 4880 210 36 38 chr3 128145148 128146891 -99377687 + L1ME1 LINE L1 4626 6366 -80 319 209 93 0 chr3 128146930 128147016 -99377562 + L1MA10 LINE L1 6235 6328 -6 1064 184 111 17 chr3 128147047 128147281 -99377297 + MER89 LTR ERV1 301 556 -3 315 49 0 0 chr3 128147283 128147324 -99377254 + (TG)n Simple_repeat Simple_repeat 2 42 0 407 222 100 0 chr3 128147422 128147512 -99377066 - MER89 LTR ERV1 -262 297 199 1984 140 20 0 chr3 128147560 128147853 -99376725 - AluSx SINE Alu -13 299 1 11587 220 49 12 chr3 128147856 128150400 -99374178 - MER89-int LTR ERV1 0 6801 4163 3541 244 92 45 chr3 128150422 128150460 -99374118 - MER89-int LTR ERV1 -3194 3708 3673 2174 103 0 27 chr3 128150460 128150761 -99373817 - AluSq SINE Alu -18 295 3 3541 244 92 45 chr3 128150761 128152037 -99372541 - MER89-int LTR ERV1 -3229 3673 118 2028 214 25 30 chr3 128152040 128152511 -99372067 - MER89-int LTR ERV1 -4259 2542 2074 2094 122 20 0 chr3 128152525 128152820 -99371758 + AluSx SINE Alu 1 301 -11 4244 243 67 68 chr3 128152874 128154476 -99370102 - MER89-int LTR ERV1 -5200 1601 1 2007 193 26 10 chr3 128154480 128154962 -99369616 - MER89 LTR ERV1 -4 555 1 2342 89 33 8 chr3 128155009 128155368 -99369210 + L1MA2 LINE L1 5937 6304 0 703 299 33 12 chr3 128155749 128155990 -99368588 + L3 LINE CR1 1219 1464 -113 428 51 17 0 chr3 128156264 128156323 -99368255 + (TTCC)n Simple_repeat Simple_repeat 1 60 0 1789 159 7 14 chr3 128156323 128156619 -99367959 - AluJb SINE Alu -18 294 1 327 121 0 0 chr3 128159085 128159143 -99365435 + (GA)n Simple_repeat Simple_repeat 1 58 0 314 289 62 0 chr3 128159912 128160009 -99364569 + L2 LINE L2 3139 3241 -31 1743 150 11 7 chr3 128160015 128160295 -99364283 + AluJo SINE Alu 1 281 -31 1004 175 27 93 chr3 128162702 128162807 -99361771 - MLT1A1 LTR MaLR -125 240 130 1989 153 0 0 chr3 128162807 128163107 -99361471 - AluSx SINE Alu -12 300 1 1004 175 27 93 chr3 128163107 128163258 -99361320 - MLT1A1 LTR MaLR -235 130 1 1137 206 55 4 chr3 128163442 128163714 -99360864 + MER33 DNA MER1_type 35 320 -4 2157 207 59 71 chr3 128163877 128164639 -99359939 - L1MC5 LINE L1 -659 7302 6531 1850 155 68 31 chr3 128164746 128164780 -99359798 - MSTB1 LTR MaLR -37 395 364 2007 97 0 4 chr3 128164780 128165047 -99359531 + AluSq SINE Alu 36 301 -12 1850 155 68 31 chr3 128165047 128165393 -99359185 - MSTB1 LTR MaLR -68 364 1 21 71 0 0 chr3 128165757 128165799 -99358779 + AT_rich Low_complexity Low_complexity 1 42 0 276 30 0 0 chr3 128166136 128166158 -99358420 + (CA)n Simple_repeat Simple_repeat 1 55 0 276 30 0 0 chr3 128166158 128166191 -99358387 + (CA)n Simple_repeat Simple_repeat 2 34 0 1944 120 0 50 chr3 128166193 128166494 -99358084 - AluSx SINE Alu -26 286 1 562 115 0 0 chr3 128166578 128166656 -99357922 - MADE1 DNA Mariner 0 80 3 553 296 113 27 chr3 128166661 128166936 -99357642 - HAL1b LINE L1 -743 605 355 2179 129 3 0 chr3 128166936 128167246 -99357332 - AluSx SINE Alu 0 312 2 553 296 113 27 chr3 128167246 128167446 -99357132 - HAL1b LINE L1 -993 355 89 345 75 0 0 chr3 128167927 128167980 -99356598 + (TG)n Simple_repeat Simple_repeat 2 54 0 2127 116 3 0 chr3 128167980 128168265 -99356313 - AluSx SINE Alu -26 286 1 1931 201 21 78 chr3 128168748 128169103 -99355475 - L1MC4 LINE L1 -5 8037 7663 216 0 0 0 chr3 128169103 128169127 -99355451 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1931 201 21 78 chr3 128169127 128169196 -99355382 - L1MC4 LINE L1 -379 7663 7592 1997 103 4 7 chr3 128169196 128169508 -99355070 - AluSc SINE Alu 0 317 7 1931 201 21 78 chr3 128169508 128169644 -99354934 - L1MC4 LINE L1 -450 7592 7507 2287 189 21 42 chr3 128169745 128169990 -99354588 - L1MC4 LINE L1 -503 7539 7290 2285 97 7 10 chr3 128169990 128170300 -99354278 + AluSx SINE Alu 1 309 -3 2287 189 21 42 chr3 128170300 128170573 -99354005 - L1MC4 LINE L1 -752 7290 7032 340 216 41 10 chr3 128171089 128171186 -99353392 + L1ME4a LINE L1 6007 6106 -15 290 293 129 29 chr3 128171214 128171354 -99353224 + MIR3 SINE MIR 3 156 -52 1184 116 6 0 chr3 128172245 128172418 -99352160 + L1MA5 LINE L1 6125 6298 -2 381 64 0 0 chr3 128172472 128172519 -99352059 + L1MA5 LINE L1 5911 5957 -343 27 73 0 0 chr3 128172546 128172601 -99351977 + AT_rich Low_complexity Low_complexity 1 55 0 1666 172 35 35 chr3 128173297 128173640 -99350938 - L1MC2 LINE L1 -84 6260 5918 3072 146 40 8 chr3 128173640 128174146 -99350432 + MER34 LTR ERV1 1 522 -20 3644 167 43 21 chr3 128174146 128175154 -99349424 - L1MC2 LINE L1 -425 5919 4901 23 68 0 0 chr3 128175865 128175909 -99348669 + AT_rich Low_complexity Low_complexity 1 44 0 4424 70 14 25 chr3 128175909 128176481 -99348097 - L1PA13 LINE L1 -1 6162 5597 306 361 39 0 chr3 128176483 128176613 -99347965 - MIR3 SINE MIR -31 177 43 284 0 0 27 chr3 128176983 128177020 -99347558 + (TG)n Simple_repeat Simple_repeat 2 37 0 398 191 22 11 chr3 128177601 128177690 -99346888 - LTR67 LTR ERVL -9 548 459 2113 117 0 20 chr3 128178918 128179218 -99345360 + AluSq SINE Alu 1 294 -19 2791 115 3 3 chr3 128179489 128179853 -99344725 + THE1B LTR MaLR 1 364 0 225 270 22 124 chr3 128180228 128180406 -99344172 + L2 LINE L2 2855 3014 -258 263 346 30 10 chr3 128180507 128180608 -99343970 + L2 LINE L2 3210 3312 -1 401 290 0 40 chr3 128181203 128181327 -99343251 - MIR SINE MIR -97 165 47 1021 244 4 38 chr3 128181690 128181956 -99342622 - MER93b LTR ERV1 0 373 117 2064 106 41 0 chr3 128181966 128182259 -99342319 - AluSx SINE Alu -4 308 4 1657 189 49 99 chr3 128182465 128182952 -99341626 + MLT1C LTR MaLR 1 463 -4 219 152 0 0 chr3 128183175 128183221 -99341357 + GA-rich Low_complexity Low_complexity 1 46 0 821 275 81 71 chr3 128183496 128183553 -99341025 - L1ME3 LINE L1 -214 5948 5893 1607 254 92 12 chr3 128183553 128183975 -99340603 + LTR40b LTR ERVL 5 460 -2 821 275 81 71 chr3 128183975 128184582 -99339996 - L1ME3 LINE L1 -269 5893 5340 1917 158 0 13 chr3 128184582 128184899 -99339679 - AluSq SINE Alu 0 313 1 821 275 81 71 chr3 128184899 128185064 -99339514 - L1ME3 LINE L1 -822 5340 5178 353 321 66 25 chr3 128185143 128185339 -99339239 + MIR3 SINE MIR 2 205 -3 395 271 110 8 chr3 128185526 128185644 -99338934 + L2 LINE L2 3137 3266 -6 395 336 14 14 chr3 128186798 128186938 -99337640 + MER5A DNA MER1_type 7 146 -43 4341 150 26 18 chr3 128187298 128188026 -99336552 + L1MB7 LINE L1 5432 6165 -19 380 277 47 51 chr3 128188363 128188626 -99335952 + L1ME3A LINE L1 4877 5145 -1001 1427 238 35 72 chr3 128188627 128189090 -99335488 + L1MC5 LINE L1 7312 7748 -213 2250 92 30 3 chr3 128189090 128189394 -99335184 - AluSp SINE Alu -1 312 1 1427 238 35 72 chr3 128189394 128189555 -99335023 + L1MC5 LINE L1 7748 7913 -48 226 268 73 92 chr3 128189758 128189922 -99334656 - L2 LINE L2 -831 2483 2323 189 0 0 0 chr3 128190314 128190335 -99334243 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2207 103 20 0 chr3 128190404 128190696 -99333882 + AluSx SINE Alu 1 298 -14 476 246 45 36 chr3 128191255 128191365 -99333213 + MER5B DNA MER1_type 67 177 -1 402 108 0 0 chr3 128191472 128191537 -99333041 + (TG)n Simple_repeat Simple_repeat 1 65 0 472 154 145 26 chr3 128192063 128192180 -99332398 - L2 LINE L2 0 3313 3183 276 203 99 139 chr3 128193350 128193468 -99331110 + L1ME3A LINE L1 5295 5403 -767 2490 77 3 0 chr3 128193468 128193778 -99330800 + AluY SINE Alu 1 311 0 276 203 99 139 chr3 128193778 128193861 -99330717 + L1ME3A LINE L1 5403 5488 -682 1035 167 41 36 chr3 128193900 128194006 -99330572 + L1ME3A LINE L1 5775 5879 -291 2060 107 7 23 chr3 128194006 128194314 -99330264 + AluSx SINE Alu 1 303 -9 1035 167 41 36 chr3 128194314 128194428 -99330150 + L1ME3A LINE L1 5879 5996 -174 247 227 52 62 chr3 128194433 128194530 -99330048 + L1ME3A LINE L1 6072 6167 -3 468 225 47 116 chr3 128194895 128195024 -99329554 + MER5B DNA MER1_type 69 177 -1 26 0 0 27 chr3 128195057 128195073 -99329505 + AT_rich Low_complexity Low_complexity 1 16 -20 2015 126 7 0 chr3 128195073 128195359 -99329219 - AluSx SINE Alu -24 288 1 26 0 0 27 chr3 128195359 128195379 -99329199 + AT_rich Low_complexity Low_complexity 16 36 0 752 224 60 6 chr3 128196004 128196187 -99328391 - MIR3 SINE MIR -6 202 10 1388 191 43 25 chr3 128196294 128196571 -99328007 + AluJo SINE Alu 1 282 -30 216 0 0 0 chr3 128196641 128196665 -99327913 + (CA)n Simple_repeat Simple_repeat 1 24 0 2021 124 0 3 chr3 128196824 128197107 -99327471 + AluSx SINE Alu 19 300 -12 198 304 295 6 chr3 128197132 128197474 -99327104 - L2 LINE L2 -631 2683 2243 234 322 217 49 chr3 128198231 128198703 -99325875 - L2 LINE L2 -790 2524 2133 1853 184 79 12 chr3 128198703 128199045 -99325533 + MLT1A1 LTR MaLR 1 365 0 234 322 217 49 chr3 128199045 128199453 -99325125 - L2 LINE L2 -1181 2133 1496 213 294 0 118 chr3 128202389 128202491 -99322087 - L2 LINE L2 -28 3244 3155 1007 185 58 11 chr3 128202967 128203156 -99321422 + MER63A DNA MER1_type 8 205 -5 2565 46 0 7 chr3 128203338 128203641 -99320937 + AluY SINE Alu 1 301 -10 1772 172 3 27 chr3 128203723 128204020 -99320558 + AluJo SINE Alu 4 293 -19 261 287 0 53 chr3 128205558 128205652 -99318926 + L2 LINE L2 3225 3313 0 210 240 0 0 chr3 128206084 128206134 -99318444 + GA-rich Low_complexity Low_complexity 3 52 0 2006 129 0 4 chr3 128206745 128207025 -99317553 + AluSx SINE Alu 1 279 -33 613 126 0 0 chr3 128207819 128207914 -99316664 + AluSp/q SINE Alu 212 306 -7 23 0 0 0 chr3 128207933 128207956 -99316622 + AT_rich Low_complexity Low_complexity 1 23 0 246 176 54 27 chr3 128208025 128208099 -99316479 - MIR3 SINE MIR -23 185 110 435 205 60 93 chr3 128210484 128210635 -99313943 + MIR SINE MIR 23 168 -94 493 188 31 0 chr3 128211364 128211460 -99313118 + L1MC4 LINE L1 6970 7068 -974 2624 213 76 84 chr3 128211570 128212527 -99312051 + L1MC4 LINE L1 7092 8041 -1 230 209 0 0 chr3 128212622 128212665 -99311913 - L2 LINE L2 -13 3259 3217 748 234 57 6 chr3 128212789 128212964 -99311614 - MIR SINE MIR -50 212 29 1062 256 225 12 chr3 128213980 128214402 -99310176 - MLT1H LTR MaLR -37 512 1 2308 112 0 0 chr3 128214684 128214988 -99309590 - AluSx SINE Alu -8 304 1 859 282 102 23 chr3 128215012 128215405 -99309173 - L2 LINE L2 -2 3311 2888 886 147 20 7 chr3 128215611 128215761 -99308817 - L1MB7 LINE L1 -7 6177 6026 2312 187 35 20 chr3 128215761 128216029 -99308549 + L1MB7 LINE L1 4280 4561 -1585 2534 188 70 2 chr3 128216029 128216502 -99308076 + MLT1D LTR MaLR 1 505 0 2312 187 35 20 chr3 128216502 128216742 -99307836 + L1MB7 LINE L1 4561 4796 -1350 859 39 0 0 chr3 128216742 128216845 -99307733 + AluY SINE Alu 175 277 -34 3483 146 25 13 chr3 128216867 128217402 -99307176 + L1MB7 LINE L1 5557 6101 -83 500 145 13 0 chr3 128217402 128217478 -99307100 + MADE1 DNA Mariner 4 80 0 3483 146 25 13 chr3 128217478 128217543 -99307035 + L1MB7 LINE L1 6101 6164 -20 958 115 77 0 chr3 128217565 128217721 -99306857 - L1M4 LINE L1 -535 5649 5482 2353 89 23 0 chr3 128217744 128218046 -99306532 - AluSg SINE Alu -1 309 1 2016 119 103 22 chr3 128218390 128218701 -99305877 + MER1B DNA MER1_type 2 337 0 23 0 0 0 chr3 128219698 128219721 -99304857 + AT_rich Low_complexity Low_complexity 1 23 0 320 269 93 0 chr3 128220129 128220237 -99304341 - MLT1L LTR MaLR -335 280 163 1030 178 30 91 chr3 128220292 128220451 -99304127 - MER20 DNA MER1_type 0 219 77 1765 163 3 23 chr3 128220451 128220752 -99303826 + AluJo SINE Alu 1 295 -17 1030 178 30 91 chr3 128220752 128220822 -99303756 - MER20 DNA MER1_type -142 77 4 2225 105 3 10 chr3 128222375 128222680 -99301898 + AluSc SINE Alu 1 303 -6 248 179 0 18 chr3 128223471 128223527 -99301051 + T-rich Low_complexity Low_complexity 3 57 0 314 109 18 18 chr3 128223657 128223712 -99300866 + L1MA9 LINE L1 6221 6275 -37 273 246 29 0 chr3 128223770 128223839 -99300739 + MIR SINE MIR 70 140 -122 1794 169 3 10 chr3 128224005 128224313 -99300265 + AluJo SINE Alu 1 306 -6 2112 196 33 36 chr3 128224666 128225172 -99299406 + L1MA9 LINE L1 5769 6275 -37 2175 122 0 0 chr3 128225187 128225475 -99299103 + AluSx SINE Alu 1 288 -24 548 301 27 0 chr3 128225538 128225724 -99298854 + MIR SINE MIR 70 260 -2 198 71 0 0 chr3 128225744 128225772 -99298806 + (CAG)n Simple_repeat Simple_repeat 2 29 0 995 224 19 5 chr3 128226418 128226623 -99297955 - MER58 DNA MER1_type -2212 208 1 244 296 112 0 chr3 128226890 128227015 -99297563 + MIR3 SINE MIR 70 208 0 21 36 0 0 chr3 128229007 128229035 -99295543 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 128229170 128229192 -99295386 + AT_rich Low_complexity Low_complexity 1 22 0 2310 93 7 10 chr3 128230284 128230585 -99293993 - AluSx SINE Alu -12 300 1 1913 153 6 10 chr3 128230881 128231194 -99293384 + AluJb SINE Alu 1 312 0 810 219 24 0 chr3 128231408 128231572 -99293006 + MER5B DNA MER1_type 1 168 -10 425 262 146 6 chr3 128232565 128232729 -99291849 - MIR SINE MIR -64 198 12 228 277 0 0 chr3 128233855 128233920 -99290658 - MLT1L LTR MaLR -5 610 546 2182 105 7 10 chr3 128234219 128234525 -99290053 - AluSx SINE Alu -7 305 1 776 286 119 36 chr3 128235084 128235637 -99288941 - L1ME3 LINE L1 -111 6010 5413 2055 83 72 0 chr3 128236503 128236780 -99287798 - AluSg SINE Alu -13 297 1 967 290 241 33 chr3 128238041 128238613 -99285965 - MER115 DNA AcHobo -1 692 2 854 278 88 36 chr3 128239060 128239424 -99285154 - LTR33 LTR ERVL -7 514 132 207 184 20 41 chr3 128241091 128241140 -99283438 - L2 LINE L2 -3 3310 3263 1630 77 0 52 chr3 128241610 128241843 -99282735 + L1PA11 LINE L1 5953 6173 -1 2398 71 10 0 chr3 128241853 128242147 -99282431 - AluSp SINE Alu -16 297 1 30 0 0 0 chr3 128242155 128242185 -99282393 + AT_rich Low_complexity Low_complexity 1 30 0 571 259 0 0 chr3 128242219 128242350 -99282228 + MER94 DNA DNA 2 132 -2 190 315 31 54 chr3 128242493 128242623 -99281955 + MIR3 SINE MIR 37 163 -45 5243 134 31 25 chr3 128242907 128243783 -99280795 - L1MC1 LINE L1 0 6333 5453 1943 164 0 3 chr3 128243974 128244285 -99280293 - AluSx SINE Alu -2 310 1 523 120 10 10 chr3 128245143 128245243 -99279335 + (TAGA)n Simple_repeat Simple_repeat 3 102 0 288 0 0 0 chr3 128245353 128245385 -99279193 + (TG)n Simple_repeat Simple_repeat 1 32 0 294 280 0 0 chr3 128246332 128246407 -99278171 + L1MC4 LINE L1 7913 7987 -55 955 143 0 0 chr3 128246483 128246616 -99277962 + FLAM_C SINE Alu 1 133 0 339 297 108 81 chr3 128246621 128246977 -99277601 + L1M4 LINE L1 4345 4719 -1427 820 193 155 0 chr3 128246977 128247158 -99277420 + MER3 DNA MER1_type 1 209 0 339 297 108 81 chr3 128247158 128247272 -99277306 + L1M4 LINE L1 4719 4828 -1318 2402 85 0 7 chr3 128247343 128247650 -99276928 + AluSg1 SINE Alu 1 305 -4 1577 206 0 16 chr3 128248066 128248382 -99276196 + AluJo SINE Alu 1 311 -1 218 204 0 0 chr3 128248443 128248492 -99276086 + A-rich Low_complexity Low_complexity 1 49 0 2046 194 18 10 chr3 128249343 128249741 -99274837 - L1MB8 LINE L1 -99 6079 5679 * 4703 128 24 45 chr3 128249736 128250281 -99274297 - L1MA3 LINE L1 -1 6170 5617 2142 100 0 41 chr3 128250281 128250600 -99273978 - AluSx SINE Alu -6 306 1 4703 128 24 45 chr3 128250600 128251108 -99273470 - L1MA3 LINE L1 -554 5617 5100 216 0 0 0 chr3 128251740 128251764 -99272814 + (TCC)n Simple_repeat Simple_repeat 1 24 0 663 307 46 36 chr3 128252328 128252634 -99271944 + L2 LINE L2 3005 3313 0 1077 161 0 12 chr3 128254552 128254720 -99269858 + FRAM SINE Alu 1 166 0 243 214 0 0 chr3 128255836 128255892 -99268686 + MIR SINE MIR 70 125 -137 1572 71 0 0 chr3 128257865 128258061 -99266517 + 7SLRNA srpRNA srpRNA 1 196 -124 1009 128 0 0 chr3 128259535 128259668 -99264910 + AluSq/x SINE Alu 1 133 -180 2001 137 0 34 chr3 128259674 128259996 -99264582 + AluSx SINE Alu 1 311 -1 735 200 0 0 chr3 128260375 128260505 -99264073 + FLAM_C SINE Alu 2 131 -2 2163 113 0 31 chr3 128260745 128261063 -99263515 + AluSc SINE Alu 1 308 -1 21 0 0 0 chr3 128261259 128261280 -99263298 + AT_rich Low_complexity Low_complexity 1 21 0 2073 130 7 0 chr3 128261283 128261583 -99262995 + AluSx SINE Alu 1 302 -10 236 283 35 69 chr3 128262058 128262203 -99262375 - MIR SINE MIR -58 204 65 2560 52 0 3 chr3 128262256 128262564 -99262014 + AluY SINE Alu 1 307 -4 1407 181 24 24 chr3 128262569 128262818 -99261760 + AluJo SINE Alu 7 255 -57 606 118 0 0 chr3 128262954 128263039 -99261539 + AluS SINE Alu 1 85 -227 445 198 57 70 chr3 128263039 128263196 -99261382 + pTR5 LTR ERV1 743 897 -1541 1348 120 0 10 chr3 128263205 128263397 -99261181 - AluSq SINE Alu -121 192 3 1308 228 64 17 chr3 128263401 128263796 -99260782 - L1ME LINE L1 -458 5773 5365 5183 179 97 49 chr3 128263929 128264275 -99260303 - Charlie1a DNA MER1_type -1311 1450 1122 6459 111 65 46 chr3 128264275 128265481 -99259097 - Tigger3b DNA MER2_type -2 1229 1 5183 179 97 49 chr3 128265481 128265989 -99258589 - Charlie1a DNA MER1_type -1639 1122 640 1994 142 10 0 chr3 128265989 128266291 -99258287 - AluSx SINE Alu -7 305 1 5183 179 97 49 chr3 128266291 128266818 -99257760 - Charlie1a DNA MER1_type -2121 640 2 986 244 47 57 chr3 128266836 128267241 -99257337 - L1ME LINE L1 -1120 5095 4695 2606 53 0 28 chr3 128267338 128267658 -99256920 - AluY SINE Alu 0 311 1 1516 285 85 31 chr3 128267727 128268333 -99256245 - L1ME LINE L1 -1994 4221 3555 1335 155 25 39 chr3 128268333 128268617 -99255961 - L1MB8 LINE L1 0 6178 5899 1516 285 85 31 chr3 128268617 128268853 -99255725 - L1ME LINE L1 -2660 3555 3333 1239 200 0 0 chr3 128268855 128269070 -99255508 - AluJb SINE Alu 0 312 98 712 230 60 12 chr3 128269113 128269361 -99255217 - L1ME LINE L1 -2921 3294 3035 398 53 18 0 chr3 128269361 128269418 -99255160 + (TC)n Simple_repeat Simple_repeat 2 59 0 835 245 109 72 chr3 128269638 128270624 -99253954 - L1ME LINE L1 -3939 2457 1435 1331 107 0 0 chr3 128270667 128270844 -99253734 - AluSq SINE Alu -136 177 1 879 108 24 48 chr3 128270845 128271012 -99253566 - MER30 DNA MER1_type -67 163 1 421 247 86 6 chr3 128272231 128272405 -99252173 + MLT1A1 LTR MaLR 2 189 -176 277 268 34 67 chr3 128272541 128272720 -99251858 - L1MEc LINE L1 -4789 1472 1300 1166 97 0 0 chr3 128272763 128272908 -99251670 - AluSq SINE Alu -136 177 33 398 327 61 8 chr3 128272908 128273171 -99251407 - L1MEc LINE L1 -4926 1156 880 2441 85 0 7 chr3 128273240 128273546 -99251032 + AluY SINE Alu 1 304 -7 249 161 269 0 chr3 128273672 128273765 -99250813 - L1ME1 LINE L1 -99 6067 5950 304 247 166 69 chr3 128273788 128274035 -99250543 - L1MEc LINE L1 -5267 803 533 2138 121 0 56 chr3 128274602 128274925 -99249653 - AluSx SINE Alu -7 305 1 321 244 22 22 chr3 128275317 128275407 -99249171 + MIR3 SINE MIR 113 202 -6 225 65 0 0 chr3 128276141 128276172 -99248406 + (TA)n Simple_repeat Simple_repeat 1 31 0 225 0 0 0 chr3 128279343 128279368 -99245210 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 324 70 0 0 chr3 128279367 128279410 -99245168 + (TG)n Simple_repeat Simple_repeat 1 43 0 248 179 0 18 chr3 128279410 128279466 -99245112 + GA-rich Low_complexity Low_complexity 2 56 0 1858 131 0 14 chr3 128279931 128280206 -99244372 + AluSx SINE Alu 1 271 -41 229 123 175 35 chr3 128280273 128280330 -99244248 + Alu SINE Alu 234 298 -2 2345 92 0 7 chr3 128280580 128280885 -99243693 + AluY SINE Alu 1 303 -8 189 154 0 0 chr3 128280996 128281035 -99243543 + (CA)n Simple_repeat Simple_repeat 2 40 0 384 77 0 0 chr3 128284506 128284558 -99240020 + (CTG)n Simple_repeat Simple_repeat 2 53 0 23 33 0 0 chr3 128288684 128288714 -99235864 + AT_rich Low_complexity Low_complexity 1 30 0 2269 118 0 0 chr3 128289099 128289404 -99235174 - AluSx SINE Alu -7 305 1 639 210 61 39 chr3 128289987 128290168 -99234410 - MIR SINE MIR -1 261 77 529 275 34 7 chr3 128290162 128290311 -99234267 - MIR SINE MIR -98 164 12 * 946 252 152 39 chr3 128291821 128292007 -99232571 - L2 LINE L2 -5 3308 3144 1359 137 202 13 chr3 128292007 128292314 -99232264 + MLT1A1 LTR MaLR 1 365 0 946 252 152 39 chr3 128292314 128292560 -99232018 - L2 LINE L2 -169 3144 2827 2035 142 3 7 chr3 128292802 128293104 -99231474 + AluSx SINE Alu 1 301 -11 2366 84 3 0 chr3 128293160 128293456 -99231122 + AluSp SINE Alu 1 297 -16 195 42 0 0 chr3 128293502 128293526 -99231052 + (T)n Simple_repeat Simple_repeat 1 24 0 1934 119 0 4 chr3 128293739 128294007 -99230571 - AluSx SINE Alu -45 267 1 2013 99 19 71 chr3 128294018 128294340 -99230238 - AluY SINE Alu -4 307 3 2137 81 8 0 chr3 128295062 128295353 -99229225 + AluSx SINE Alu 24 316 0 780 271 72 71 chr3 128295434 128296673 -99227905 + HAL1 LINE L1 238 2212 -295 536 249 33 62 chr3 128296685 128296926 -99227652 + HAL1 LINE L1 2264 2497 -10 2112 125 0 3 chr3 128297771 128298068 -99226510 + AluSx SINE Alu 1 296 -16 204 158 0 0 chr3 128298068 128298106 -99226472 + G-rich Low_complexity Low_complexity 3 40 0 1374 194 56 14 chr3 128298215 128298499 -99226079 - AluJo SINE Alu -16 296 1 1954 179 0 6 chr3 128299213 128299525 -99225053 - AluJb SINE Alu -2 310 1 2066 112 58 3 chr3 128299586 128299880 -99224698 - AluSx SINE Alu -2 310 1 2408 93 13 0 chr3 128301796 128302097 -99222481 - AluSx SINE Alu -7 305 1 336 242 73 84 chr3 128302906 128303084 -99221494 + L1ME4a LINE L1 5881 6056 -65 780 116 8 8 chr3 128303137 128303266 -99221312 - THE1C LTR MaLR 0 375 247 2332 77 11 130 chr3 128303270 128303725 -99220853 - THE1C-int LTR MaLR -1179 401 1 2553 103 19 3 chr3 128303725 128304094 -99220484 - THE1C LTR MaLR 0 375 1 653 318 17 13 chr3 128304202 128304435 -99220143 + MIR SINE MIR 23 256 -6 327 316 31 10 chr3 128305336 128305434 -99219144 + MER5A DNA MER1_type 59 158 -31 346 161 0 25 chr3 128305437 128305518 -99219060 + C-rich Low_complexity Low_complexity 3 81 0 243 232 143 0 chr3 128305566 128305622 -99218956 + MER5A DNA MER1_type 101 164 -25 193 268 54 0 chr3 128305583 128305639 -99218939 - MER5B DNA MER1_type -114 64 6 * 1223 141 38 156 chr3 128306192 128306464 -99218114 - AluJo SINE Alu -1 301 75 288 0 0 0 chr3 128306464 128306496 -99218082 + (TC)n Simple_repeat Simple_repeat 1 32 0 1223 141 38 156 chr3 128306496 128306563 -99218015 - AluJo SINE Alu -227 75 2 232 217 22 0 chr3 128306671 128306717 -99217861 + MER5A DNA MER1_type 1 47 -142 914 196 158 47 chr3 128306737 128306863 -99217715 - L1ME2 LINE L1 -10 6154 6043 2276 125 0 0 chr3 128306863 128307168 -99217410 - AluSx SINE Alu -7 305 1 914 196 158 47 chr3 128307168 128307358 -99217220 - L1ME2 LINE L1 -121 6043 5803 446 76 15 0 chr3 128307398 128307464 -99217114 - AluSp/q SINE Alu -13 300 234 2730 161 78 41 chr3 128307469 128307985 -99216593 - L1 LINE L1 -2417 5148 4652 1787 151 49 0 chr3 128307985 128308270 -99216308 + AluSx SINE Alu 1 299 -13 2730 161 78 41 chr3 128308270 128308424 -99216154 - L1 LINE L1 -2913 4652 4505 2175 129 0 7 chr3 128308424 128308734 -99215844 - AluSx SINE Alu -4 308 1 2730 161 78 41 chr3 128308734 128308991 -99215587 - L1 LINE L1 -3060 4505 4190 1101 68 12 86 chr3 128308991 128309154 -99215424 - AluSq/x SINE Alu -161 152 2 2206 87 3 20 chr3 128309180 128309478 -99215100 - AluSg SINE Alu -17 293 1 1868 170 0 22 chr3 128309499 128309816 -99214762 + AluJb SINE Alu 3 312 0 12013 151 41 78 chr3 128309822 128310920 -99213658 - L1 LINE L1 -3398 4167 3029 2459 93 0 0 chr3 128310920 128311222 -99213356 - AluSc SINE Alu -7 302 1 12013 151 41 78 chr3 128311222 128313913 -99210665 - L1 LINE L1 -4536 3029 130 674 206 8 0 chr3 128313913 128314044 -99210534 - FLAM_C SINE Alu -11 132 1 271 159 352 0 chr3 128314044 128314132 -99210446 - L1 LINE L1 -7430 135 17 356 227 13 0 chr3 128314401 128314476 -99210102 - MLT1F1 LTR MaLR -456 111 36 2670 194 55 31 chr3 128314477 128314674 -99209904 - L1MD3 LINE L1 -888 7107 6916 366 42 0 0 chr3 128314674 128314722 -99209856 + (CA)n Simple_repeat Simple_repeat 2 49 0 2670 194 55 31 chr3 128314722 128315201 -99209377 - L1MD3 LINE L1 -1079 6916 6415 216 271 71 0 chr3 128315273 128315343 -99209235 + L2 LINE L2 3193 3267 -5 2218 107 0 3 chr3 128315574 128315873 -99208705 - AluSg SINE Alu -12 298 1 181 298 64 0 chr3 128315937 128315984 -99208594 - MER5A DNA MER1_type 0 189 140 515 260 0 8 chr3 128316005 128316128 -99208450 + L2 LINE L2 3192 3313 0 215 263 105 0 chr3 128316134 128316191 -99208387 - MER5B DNA MER1_type -99 79 17 2107 74 33 0 chr3 128316214 128316517 -99208061 + AluY SINE Alu 1 312 0 516 342 63 4 chr3 128316570 128316807 -99207771 + MIR SINE MIR 6 256 -6 467 340 77 43 chr3 128318098 128318361 -99206217 + L2 LINE L2 1525 1778 -1494 1909 153 0 3 chr3 128318361 128318662 -99205916 + AluSx SINE Alu 1 300 -12 467 340 77 43 chr3 128318662 128318901 -99205677 + L2 LINE L2 1778 3112 -160 1492 104 22 3 chr3 128319380 128319643 -99204935 - MER1B DNA MER1_type 0 339 42 236 216 81 54 chr3 128320095 128320169 -99204409 + L2 LINE L2 3237 3312 -1 254 361 56 0 chr3 128320604 128320712 -99203866 - L2 LINE L2 0 3272 3159 546 253 35 40 chr3 128321434 128321608 -99202970 + MER5B DNA MER1_type 6 178 0 1012 142 38 75 chr3 128322050 128322218 -99202360 + MER30 DNA MER1_type 1 159 -71 2173 110 3 3 chr3 128322218 128322517 -99202061 + AluSx SINE Alu 1 299 -13 1012 142 38 75 chr3 128322517 128322587 -99201991 + MER30 DNA MER1_type 159 230 0 352 298 91 97 chr3 128323508 128323844 -99200734 + L1M2 LINE L1 499 835 -6014 186 103 0 0 chr3 128323844 128323873 -99200705 + (CGG)n Simple_repeat Simple_repeat 1 29 0 352 298 91 97 chr3 128323873 128324224 -99200354 + L1M2 LINE L1 835 1252 -5597 397 107 0 27 chr3 128325816 128325891 -99198687 + (TTTCC)n Simple_repeat Simple_repeat 1 73 0 1137 183 60 13 chr3 128325891 128326126 -99198452 - AluJb SINE Alu -3 309 64 1949 92 82 14 chr3 128326844 128327136 -99197442 - AluSx SINE Alu 0 312 1 2101 91 13 27 chr3 128327136 128327434 -99197144 - AluSg SINE Alu -16 294 1 1517 148 49 62 chr3 128327536 128327840 -99196738 - AluJo SINE Alu -12 300 1 712 197 6 42 chr3 128327881 128328066 -99196512 - L1ME LINE L1 -571 5591 5413 2231 104 0 0 chr3 128328066 128328355 -99196223 + AluSq SINE Alu 1 289 -24 434 262 48 0 chr3 128328364 128328509 -99196069 - L1ME LINE L1 -816 5330 5179 21 0 0 0 chr3 128328509 128328530 -99196048 + AT_rich Low_complexity Low_complexity 1 21 0 638 167 9 0 chr3 128328537 128328651 -99195927 - Tigger1 DNA MER2_type 0 2418 2304 420 204 0 20 chr3 128328667 128328765 -99195813 + FLAM_A SINE Alu 44 139 -3 665 169 17 8 chr3 128328765 128328883 -99195695 + AluJb SINE Alu 183 301 -11 935 183 32 32 chr3 128328893 128329079 -99195499 + AluJo SINE Alu 2 187 -125 1683 118 19 11 chr3 128329179 128329449 -99195129 - L1PA16 LINE L1 -112 6054 5783 2300 114 0 3 chr3 128329665 128329972 -99194606 - AluSx SINE Alu -6 306 1 404 154 165 11 chr3 128330204 128330295 -99194283 - L1MC3 LINE L1 -26 7759 7655 633 129 101 119 chr3 128330301 128330683 -99193895 + L1MB7 LINE L1 5188 5553 -631 392 115 16 0 chr3 128330693 128330754 -99193824 - MLT1D LTR MaLR -76 429 368 891 187 70 79 chr3 128330765 128331144 -99193434 + MLT1B LTR MaLR 10 390 0 * 1197 182 96 69 chr3 128331144 128331505 -99193073 - MLT1D LTR MaLR -134 371 1 1718 232 61 25 chr3 128331505 128332075 -99192503 + L1MB7 LINE L1 5582 6172 -12 1659 219 138 15 chr3 128332123 128333063 -99191515 + L1ME1 LINE L1 5019 6145 -21 356 170 170 83 chr3 128333132 128333237 -99191341 + L1MEc LINE L1 2156 2250 -4146 2007 115 14 7 chr3 128333237 128333524 -99191054 - AluSx SINE Alu -23 289 1 356 170 170 83 chr3 128333524 128333636 -99190942 + L1MEc LINE L1 2250 2392 -4004 2205 118 0 3 chr3 128333739 128334044 -99190534 - AluY SINE Alu -7 304 1 5733 118 60 18 chr3 128334044 128335028 -99189550 - HSMAR2 DNA Mariner -57 1245 221 1326 188 0 5 chr3 128335032 128335250 -99189328 - AluJb SINE Alu -14 298 82 487 86 12 25 chr3 128335250 128335331 -99189247 - HSMAR2 DNA Mariner -1220 82 3 8428 106 22 3 chr3 128335341 128336633 -99187945 - Tigger1 DNA MER2_type -927 1491 176 5556 122 8 24 chr3 128336636 128336975 -99187603 + L1PA15 LINE L1 5128 5471 -694 1618 167 46 0 chr3 128336975 128337257 -99187321 - AluJb SINE Alu -17 295 1 5556 122 8 24 chr3 128337257 128337406 -99187172 + L1PA15 LINE L1 5471 5621 -544 2258 99 0 7 chr3 128337406 128337709 -99186869 + AluSg SINE Alu 1 301 -9 5556 122 8 24 chr3 128337709 128338267 -99186311 + L1PA15 LINE L1 5621 6160 -5 1830 149 7 10 chr3 128338562 128338858 -99185720 - AluJb SINE Alu -17 295 1 1111 152 0 0 chr3 128338913 128339097 -99185481 - Tigger1 DNA MER2_type -2233 185 2 619 244 20 76 chr3 128339107 128339410 -99185168 - L1ME2 LINE L1 -11 6153 5868 1579 187 14 25 chr3 128339435 128339719 -99184859 - AluJo SINE Alu -31 281 1 4498 203 86 99 chr3 128339731 128339871 -99184707 - L1ME2 LINE L1 -572 5594 5454 1800 153 28 0 chr3 128339871 128340153 -99184425 - AluJb SINE Alu -22 290 1 4498 203 86 99 chr3 128340153 128342822 -99181756 - L1ME2 LINE L1 -712 5454 2833 1003 83 23 0 chr3 128342847 128342979 -99181599 - AluSp/q SINE Alu -10 303 169 1234 106 122 5 chr3 128342998 128343187 -99181391 - AluSx SINE Alu -75 237 27 569 155 59 152 chr3 128343224 128343514 -99181064 - L1MA10 LINE L1 0 6334 6072 21 0 0 0 chr3 128343514 128343535 -99181043 + AT_rich Low_complexity Low_complexity 1 21 0 281 170 0 0 chr3 128343535 128343588 -99180990 - L1MB1 LINE L1 -71 6118 6066 255 133 0 117 chr3 128343595 128343629 -99180949 + L2 LINE L2 3219 3245 -27 1904 103 92 0 chr3 128343629 128343901 -99180677 - AluSp SINE Alu -16 297 1 255 133 0 117 chr3 128343901 128343926 -99180652 + L2 LINE L2 3245 3271 -1 2308 83 0 0 chr3 128344127 128344415 -99180163 - AluY SINE Alu -15 296 9 2081 136 10 7 chr3 128345511 128345820 -99178758 + AluSx SINE Alu 1 310 -2 265 304 43 0 chr3 128346094 128346163 -99178415 + L2 LINE L2 3209 3280 -33 1855 122 20 10 chr3 128346948 128347244 -99177334 + AluSx SINE Alu 1 299 -13 1346 206 61 81 chr3 128347813 128348319 -99176259 + MLT1F LTR MaLR 2 497 -45 2359 88 65 6 chr3 128354586 128354938 -99169640 + THE1C LTR MaLR 1 373 -2 189 74 0 0 chr3 128355355 128355382 -99169196 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 1472 169 55 33 chr3 128355397 128355670 -99168908 + AluJo SINE Alu 21 299 -13 2006 118 0 0 chr3 128356395 128356667 -99167911 + AluSg SINE Alu 39 310 0 1637 154 71 4 chr3 128356705 128356985 -99167593 - AluJb SINE Alu -13 299 1 614 295 139 0 chr3 128358556 128358800 -99165778 + L2 LINE L2 2152 2429 -885 2104 150 0 13 chr3 128358869 128359183 -99165395 - AluSx SINE Alu -2 310 1 244 167 51 13 chr3 128359183 128359261 -99165317 - L1M4 LINE L1 -2460 3686 3606 373 224 142 0 chr3 128359288 128359422 -99165156 - L1M4 LINE L1 -3658 2488 2336 805 163 7 14 chr3 128359427 128359574 -99165004 - AluY SINE Alu -4 307 162 2390 68 0 10 chr3 128359964 128360274 -99164304 - AluY SINE Alu -4 307 1 612 294 33 15 chr3 128360530 128360802 -99163776 - LTR16A LTR ERVL -79 371 95 239 274 142 28 chr3 128360824 128360930 -99163648 - L2 LINE L2 -262 3051 2934 2448 67 0 3 chr3 128360983 128361280 -99163298 + AluY SINE Alu 1 296 -15 2413 82 0 7 chr3 128361471 128361775 -99162803 - AluSg SINE Alu -8 302 1 184 354 66 101 chr3 128362288 128362545 -99162033 + L2 LINE L2 3005 3252 -20 291 178 67 81 chr3 128362941 128363052 -99161526 - MIR SINE MIR -57 151 36 2295 111 7 0 chr3 128363071 128363377 -99161201 + AluSx SINE Alu 2 309 -3 343 346 88 26 chr3 128363379 128363607 -99160971 + L3 LINE CR1 1007 1248 -329 2174 134 0 0 chr3 128363767 128364065 -99160513 - AluSq SINE Alu -13 300 3 276 345 78 14 chr3 128364113 128364255 -99160323 - MIR SINE MIR -99 163 13 267 319 18 35 chr3 128364260 128364373 -99160205 + L3 LINE CR1 1464 1574 -3 1887 133 7 36 chr3 128364615 128364924 -99159654 + AluJb SINE Alu 2 301 -11 777 281 89 35 chr3 128365849 128366012 -99158566 - L2 LINE L2 -129 3184 3031 1455 225 18 0 chr3 128366012 128366297 -99158281 + AluJb SINE Alu 2 291 -21 777 281 89 35 chr3 128366297 128366521 -99158057 - L2 LINE L2 -282 3031 2779 1843 154 0 14 chr3 128366645 128366958 -99157620 + AluSx SINE Alu 1 309 0 943 159 0 0 chr3 128366958 128367096 -99157482 + AluJo/FRAM SINE Alu 131 268 -44 22 0 0 0 chr3 128367102 128367124 -99157454 + AT_rich Low_complexity Low_complexity 1 22 0 26 30 0 0 chr3 128367239 128367272 -99157306 + AT_rich Low_complexity Low_complexity 1 33 0 233 171 0 0 chr3 128367707 128367742 -99156836 + L2 LINE L2 3222 3256 -16 22 0 0 0 chr3 128368374 128368396 -99156182 + AT_rich Low_complexity Low_complexity 1 22 0 1290 65 0 12 chr3 128368396 128368566 -99156012 - L1PA8 LINE L1 -6 6166 5999 2061 120 7 7 chr3 128369773 128370072 -99154506 + AluSx SINE Alu 1 299 -13 239 242 0 67 chr3 128371018 128371080 -99153498 - L1MC4a LINE L1 -1833 5975 5910 471 113 0 0 chr3 128371080 128371151 -99153427 + (TA)n Simple_repeat Simple_repeat 1 71 0 2014 101 0 4 chr3 128371153 128371421 -99153157 - AluSg1 SINE Alu -4 305 39 239 242 0 67 chr3 128371421 128371475 -99153103 - L1MC4a LINE L1 -1899 5909 5864 496 282 189 6 chr3 128371657 128371913 -99152665 - L1MC4a LINE L1 -1953 5832 5532 2213 209 63 13 chr3 128372105 128372660 -99151918 + MER119 DNA MER1_type 1 583 0 2253 102 0 0 chr3 128373697 128373990 -99150588 + AluSg SINE Alu 1 293 -17 228 308 126 25 chr3 128374694 128374886 -99149692 - L2 LINE L2 -1084 2230 2019 222 297 33 66 chr3 128374886 128374977 -99149601 + MER5B DNA MER1_type 2 97 -92 1832 132 13 20 chr3 128375316 128375619 -99148959 - AluSg SINE Alu -9 301 1 589 195 24 24 chr3 128376334 128376457 -99148121 - FLAM_A SINE Alu -10 123 1 393 303 67 0 chr3 128376614 128376733 -99147845 - MIR3 SINE MIR -48 160 34 721 238 29 6 chr3 128377302 128377474 -99147104 - MER20 DNA MER1_type 0 219 44 770 161 0 0 chr3 128377556 128377674 -99146904 + AluJb SINE Alu 1 118 -194 249 235 258 38 chr3 128377893 128378025 -99146553 + L2 LINE L2 2192 2352 -962 562 281 35 15 chr3 128378960 128379159 -99145419 + L1ME LINE L1 5511 5713 -408 661 197 136 19 chr3 128379784 128379997 -99144581 - Charlie5 DNA MER1_type -129 2483 2246 1696 172 0 45 chr3 128380001 128380309 -99144269 - AluJb SINE Alu -18 294 1 260 229 0 0 chr3 128380920 128380981 -99143597 - Charlie5 DNA MER1_type -2546 66 6 965 205 87 31 chr3 128381385 128381741 -99142837 + MER20B DNA MER1_type 368 743 -40 1172 182 10 0 chr3 128381891 128382109 -99142469 - AluJo SINE Alu 0 304 85 441 152 0 0 chr3 128382109 128382175 -99142403 - AluSp/q SINE Alu -63 250 185 1913 134 0 13 chr3 128383814 128384127 -99140451 + AluJb SINE Alu 2 310 -2 25 31 0 0 chr3 128385884 128385916 -99138662 + GC_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr3 128386637 128386661 -99137917 + GC_rich Low_complexity Low_complexity 1 24 0 387 0 0 0 chr3 128388897 128388940 -99135638 + (CA)n Simple_repeat Simple_repeat 1 43 0 297 250 42 14 chr3 128389323 128389395 -99135183 + L2 LINE L2 3237 3310 -3 209 262 148 16 chr3 128389689 128389750 -99134828 + MIR SINE MIR 25 93 -115 2021 119 0 10 chr3 128389851 128390144 -99134434 + AluY SINE Alu 21 310 -1 295 292 60 2 chr3 128390204 128390302 -99134276 + MIR SINE MIR 38 140 -68 26 30 0 0 chr3 128390352 128390385 -99134193 + AT_rich Low_complexity Low_complexity 1 33 0 249 206 19 47 chr3 128391281 128391388 -99133190 + (TA)n Simple_repeat Simple_repeat 1 104 0 22 35 0 0 chr3 128392267 128392296 -99132282 + AT_rich Low_complexity Low_complexity 1 29 0 339 293 37 37 chr3 128392356 128392520 -99132058 + L1ME LINE L1 4863 5026 -1120 322 318 80 37 chr3 128392767 128393254 -99131324 + L1ME LINE L1 5310 5817 -304 1287 176 0 5 chr3 128393327 128393543 -99131035 - AluJb SINE Alu -10 302 88 1822 152 6 37 chr3 128393875 128394197 -99130381 + AluJo SINE Alu 1 312 0 615 260 120 11 chr3 128394741 128394934 -99129644 + MIR SINE MIR 16 232 -30 1598 152 42 21 chr3 128394955 128395238 -99129340 + AluJb SINE Alu 1 289 -23 303 320 12 6 chr3 128395435 128395607 -99128971 - L1MC4a LINE L1 -1858 5950 5778 823 231 42 14 chr3 128395622 128395838 -99128740 - MIR SINE MIR -10 252 31 537 212 162 11 chr3 128395888 128396067 -99128511 - L1MC4a LINE L1 -2037 5771 5566 2382 93 0 3 chr3 128397497 128397798 -99126780 + AluSc SINE Alu 1 300 -9 2780 177 176 15 chr3 128397902 128399048 -99125530 - L1ME1 LINE L1 -4 6162 4833 25 31 0 0 chr3 128399066 128399098 -99125480 + AT_rich Low_complexity Low_complexity 1 32 0 46 68 0 0 chr3 128399184 128399272 -99125306 + AT_rich Low_complexity Low_complexity 1 88 0 397 297 14 36 chr3 128399457 128399595 -99124983 - L2 LINE L2 -6 3307 3173 2332 94 7 3 chr3 128400080 128400379 -99124199 + AluY SINE Alu 1 300 -11 2148 123 0 0 chr3 128400420 128400713 -99123865 + AluSc SINE Alu 1 293 -16 856 157 0 15 chr3 128400739 128400873 -99123705 - FLAM_A SINE Alu 0 133 2 2152 112 3 0 chr3 128401088 128401382 -99123196 + AluSp SINE Alu 1 295 -18 2264 95 3 0 chr3 128401504 128401798 -99122780 + AluSp SINE Alu 1 295 -18 2195 106 3 0 chr3 128401920 128402213 -99122365 + AluSp SINE Alu 1 294 -19 348 309 173 0 chr3 128402457 128402619 -99121959 - L1ME LINE L1 -365 5756 5567 2246 85 17 7 chr3 128402725 128403020 -99121558 - AluY SINE Alu -13 298 1 457 208 75 35 chr3 128403294 128403467 -99121111 + MER104 DNA MER2_type 1 180 0 1939 136 27 3 chr3 128403591 128403885 -99120693 + AluJb SINE Alu 1 301 -11 256 115 0 11 chr3 128404408 128404461 -99120117 + Alu SINE Alu 1 38 -261 633 142 59 148 chr3 128404480 128404649 -99119929 + AluJb SINE Alu 148 301 -11 2029 112 39 3 chr3 128404966 128405252 -99119326 + AluSq SINE Alu 1 296 -17 2156 93 3 33 chr3 128405269 128405569 -99119009 + AluSx SINE Alu 1 291 -21 1483 187 65 34 chr3 128405716 128405916 -99118662 - MLT1A1 LTR MaLR -1 364 147 1761 189 10 10 chr3 128405916 128406228 -99118350 - AluJb SINE Alu 0 312 1 1483 187 65 34 chr3 128406228 128406380 -99118198 - MLT1A1 LTR MaLR -218 147 1 527 80 13 0 chr3 128406408 128406483 -99118095 + MADE1 DNA Mariner 5 80 0 194 366 59 10 chr3 128406608 128406709 -99117869 + MIR SINE MIR 151 256 -6 2152 127 10 0 chr3 128406720 128407020 -99117558 - AluSg SINE Alu -7 303 1 1985 113 25 7 chr3 128407293 128407577 -99117001 - AluSg1 SINE Alu -20 289 1 21 0 0 0 chr3 128407995 128408016 -99116562 + AT_rich Low_complexity Low_complexity 1 21 0 454 308 81 51 chr3 128408035 128408226 -99116352 - MLT1L LTR MaLR -120 495 288 2286 98 24 0 chr3 128408226 128408522 -99116056 - AluSx SINE Alu -9 303 1 454 308 81 51 chr3 128408522 128408665 -99115913 - MLT1L LTR MaLR -327 288 151 352 0 0 0 chr3 128409663 128409702 -99114876 + (TTTA)n Simple_repeat Simple_repeat 2 116 0 1792 157 14 4 chr3 128409702 128409983 -99114595 - AluSx SINE Alu -1 322 1 1864 131 0 4 chr3 128410029 128410296 -99114282 + AluSx SINE Alu 1 266 -46 1343 157 22 103 chr3 128410396 128410708 -99113870 - AluJo SINE Alu -5 307 21 661 165 16 31 chr3 128410752 128410879 -99113699 - FLAM_A SINE Alu 0 142 18 26 30 0 0 chr3 128410974 128411007 -99113571 + AT_rich Low_complexity Low_complexity 1 33 0 2061 130 3 19 chr3 128411659 128411974 -99112604 - AluJb SINE Alu -2 310 1 21 0 0 0 chr3 128412273 128412294 -99112284 + AT_rich Low_complexity Low_complexity 1 21 0 288 111 48 63 chr3 128412630 128412693 -99111885 - MADE1 DNA Mariner -18 62 1 198 71 0 0 chr3 128412796 128412824 -99111754 + (TC)n Simple_repeat Simple_repeat 1 28 0 1393 206 32 11 chr3 128412826 128413107 -99111471 - AluJo SINE Alu -25 287 1 2037 116 3 46 chr3 128413216 128413543 -99111035 - AluSq SINE Alu 0 313 1 2067 125 3 3 chr3 128413945 128414242 -99110336 - AluSq SINE Alu -16 297 1 22 0 0 0 chr3 128414403 128414425 -99110153 + AT_rich Low_complexity Low_complexity 1 22 0 1805 115 21 100 chr3 128414882 128415222 -99109356 + AluYb8 SINE Alu 1 313 -5 1143 271 135 29 chr3 128415479 128416004 -99108574 - HAL1b LINE L1 -547 801 221 395 269 86 39 chr3 128417040 128417192 -99107386 - L1MC4a LINE L1 -357 5813 5678 1829 166 10 3 chr3 128417235 128417530 -99107048 - AluJo SINE Alu -15 297 1 239 227 13 53 chr3 128417626 128417701 -99106877 - L1M3 LINE L1 -793 5541 5470 * 266 260 39 19 chr3 128417696 128417800 -99106778 - L1MC4 LINE L1 -13 8029 7924 2249 106 0 25 chr3 128417937 128418257 -99106321 - AluSx SINE Alu 0 312 1 234 293 157 50 chr3 128418844 128418984 -99105594 - MIR SINE MIR -59 203 49 760 264 163 31 chr3 128419278 128419665 -99104913 - MLT1J1 LTR MaLR 0 446 9 220 366 20 10 chr3 128420208 128420309 -99104269 - MER5B DNA MER1_type 0 178 77 45 45 0 0 chr3 128420311 128420377 -99104201 + AT_rich Low_complexity Low_complexity 1 66 0 21 36 0 0 chr3 128420492 128420520 -99104058 + AT_rich Low_complexity Low_complexity 1 28 0 244 260 144 29 chr3 128421202 128421306 -99103272 - MLT1J2 LTR MaLR -124 326 211 2267 112 0 3 chr3 128421828 128422131 -99102447 - AluSq SINE Alu -11 302 1 2048 120 3 17 chr3 128422151 128422450 -99102128 - AluSx SINE Alu -17 295 1 2137 112 24 0 chr3 128422752 128423046 -99101532 + AluSx SINE Alu 1 301 -11 31 26 0 0 chr3 128423437 128423475 -99101103 + AT_rich Low_complexity Low_complexity 1 38 0 210 321 95 0 chr3 128423632 128423716 -99100862 + MIR SINE MIR 30 121 -87 1201 292 123 39 chr3 128424001 128424844 -99099734 + L1MB2 LINE L1 3662 4433 -1713 2298 91 0 7 chr3 128424844 128425142 -99099436 + AluSg SINE Alu 1 296 -14 1201 292 123 39 chr3 128425142 128425745 -99098833 + L1MB2 LINE L1 4433 5230 -916 1785 175 0 14 chr3 128425767 128426059 -99098519 + AluJo SINE Alu 1 288 -24 43 56 0 0 chr3 128426070 128426141 -99098437 + AT_rich Low_complexity Low_complexity 1 71 0 235 288 0 38 chr3 128426419 128426499 -99098079 + L1MB2 LINE L1 5612 5688 -495 2125 105 14 0 chr3 128427234 128427520 -99097058 - AluSc SINE Alu -19 290 1 2011 135 0 14 chr3 128427559 128427855 -99096723 - AluJb SINE Alu -18 294 3 2777 173 21 11 chr3 128427855 128428330 -99096248 + L1MB2 LINE L1 5691 6170 -1 1649 163 29 7 chr3 128428906 128429183 -99095395 - AluJb SINE Alu -26 286 4 1967 104 0 8 chr3 128430462 128430730 -99093848 - AluSc SINE Alu -10 299 34 1581 134 91 14 chr3 128430883 128431159 -99093419 + AluJb SINE Alu 1 297 -15 1380 75 11 21 chr3 128431351 128431537 -99093041 - AluSg/x SINE Alu -11 301 118 34 0 0 0 chr3 128431755 128431789 -99092789 + AT_rich Low_complexity Low_complexity 1 34 0 322 260 159 50 chr3 128431855 128431962 -99092616 + L1ME4a LINE L1 5599 5693 -428 2245 108 3 7 chr3 128431962 128432268 -99092310 - AluSx SINE Alu -1 311 7 322 260 159 50 chr3 128432268 128432418 -99092160 + L1ME4a LINE L1 5693 5884 -237 2275 82 14 0 chr3 128432645 128432936 -99091642 + AluSx SINE Alu 1 295 -17 2302 108 0 9 chr3 128433698 128434013 -99090565 - AluSx SINE Alu 0 312 1 2048 120 3 17 chr3 128434033 128434332 -99090246 - AluSx SINE Alu -17 295 1 1000 107 0 0 chr3 128434675 128434806 -99089772 - AluSc SINE Alu -178 131 1 2268 93 3 20 chr3 128435182 128435482 -99089096 + AluSx SINE Alu 1 295 -17 2438 80 3 0 chr3 128436244 128436556 -99088022 - AluSp SINE Alu 0 313 1 22 0 0 0 chr3 128437430 128437452 -99087126 + AT_rich Low_complexity Low_complexity 1 22 0 1309 265 55 48 chr3 128438974 128439449 -99085129 - LTR16C LTR ERVL -3 488 11 2078 121 17 7 chr3 128439508 128439806 -99084772 + AluSx SINE Alu 3 303 -9 502 234 159 0 chr3 128439963 128440108 -99084470 - MIR3 SINE MIR -33 175 8 2022 124 10 7 chr3 128440263 128440553 -99084025 - AluSx SINE Alu -18 294 4 992 173 0 0 chr3 128440564 128440726 -99083852 - AluJo/FRAM SINE Alu -17 295 134 2167 112 6 16 chr3 128440726 128441038 -99083540 - AluSx SINE Alu -3 309 1 3107 181 119 47 chr3 128441174 128441904 -99082674 + L1ME3A LINE L1 5221 6020 -150 2275 110 3 0 chr3 128441904 128442205 -99082373 + AluSx SINE Alu 1 302 -10 3107 181 119 47 chr3 128442205 128442368 -99082210 + L1ME3A LINE L1 6020 6170 0 368 225 53 51 chr3 128442801 128442946 -99081632 + MER5A DNA MER1_type 4 161 -28 2279 91 0 7 chr3 128443012 128443310 -99081268 + AluSc SINE Alu 1 296 -13 1430 189 0 16 chr3 128443759 128444008 -99080570 + AluJo SINE Alu 1 245 -67 2337 83 3 7 chr3 128444017 128444319 -99080259 - AluSp SINE Alu -11 302 2 539 323 104 48 chr3 128444439 128444851 -99079727 - LTR16A LTR ERVL -2 448 14 394 204 35 9 chr3 128444982 128445095 -99079483 - MER113 DNA MER1_type? -405 116 1 883 133 0 16 chr3 128445152 128445280 -99079298 + FLAM_C SINE Alu 1 126 -17 2136 125 3 16 chr3 128445286 128445598 -99078980 + AluSg SINE Alu 1 308 -2 1027 156 0 33 chr3 128445791 128445971 -99078607 - AluJb SINE Alu -2 310 137 1328 237 66 62 chr3 128446012 128446467 -99078111 + LTR16A1 LTR ERVL 1 457 0 2107 125 30 0 chr3 128446609 128446906 -99077672 + AluSq SINE Alu 1 306 -7 1981 162 0 0 chr3 128446918 128447215 -99077363 + AluSx SINE Alu 1 297 -15 2436 84 3 0 chr3 128447215 128447523 -99077055 + AluY SINE Alu 1 310 -1 336 83 0 0 chr3 128447683 128447731 -99076847 + (TTCC)n Simple_repeat Simple_repeat 4 51 0 651 164 23 78 chr3 128447764 128447892 -99076686 - AluJo SINE Alu -103 209 89 1766 153 29 0 chr3 128447978 128448253 -99076325 - AluJo SINE Alu -9 303 21 1638 168 64 20 chr3 128448273 128448570 -99076008 - AluJo SINE Alu -2 310 1 1968 152 3 14 chr3 128448601 128448897 -99075681 - AluJb SINE Alu -19 293 1 23 0 0 0 chr3 128449006 128449029 -99075549 + AT_rich Low_complexity Low_complexity 1 23 0 2467 58 3 0 chr3 128449266 128449559 -99075019 - AluY SINE Alu -17 294 1 1873 121 21 25 chr3 128450045 128450351 -99074227 - AluSx SINE Alu 0 305 1 208 147 0 0 chr3 128450388 128450422 -99074156 + (TA)n Simple_repeat Simple_repeat 2 35 0 231 269 104 57 chr3 128450535 128450645 -99073933 - L1ME3 LINE L1 0 6162 6038 2239 125 0 0 chr3 128450645 128450948 -99073630 + AluSx SINE Alu 1 303 -9 231 269 104 57 chr3 128450948 128451030 -99073548 - L1ME3 LINE L1 -124 6038 5961 297 233 151 0 chr3 128451557 128451643 -99072935 - HAL1 LINE L1 -630 1877 1779 236 179 90 60 chr3 128451698 128451765 -99072813 - HAL1 LINE L1 -803 1704 1636 315 250 19 153 chr3 128451768 128451837 -99072741 - HAL1 LINE L1 -2091 416 339 1983 122 41 3 chr3 128451837 128452131 -99072447 + AluSx SINE Alu 1 305 -7 315 250 19 153 chr3 128452131 128452277 -99072301 - HAL1 LINE L1 -2168 339 230 449 257 179 0 chr3 128452412 128452552 -99072026 - HAL1 LINE L1 -2315 192 28 426 20 0 0 chr3 128452554 128452605 -99071973 + (CA)n Simple_repeat Simple_repeat 2 52 0 614 182 36 9 chr3 128452614 128452724 -99071854 - FLAM_C SINE Alu -19 124 12 194 296 68 23 chr3 128453065 128453153 -99071425 + L2 LINE L2 211 302 -3012 1961 105 3 14 chr3 128453153 128453438 -99071140 - AluSx SINE Alu -16 296 15 451 168 30 114 chr3 128453539 128453570 -99071008 + L2 LINE L2 324 356 -2958 1380 115 83 28 chr3 128453570 128453653 -99070925 + MER30 DNA MER1_type 1 78 -152 2149 92 4 4 chr3 128453653 128453956 -99070622 + AluSx SINE Alu 1 303 0 1380 115 83 28 chr3 128453956 128454089 -99070489 + MER30 DNA MER1_type 78 230 0 451 168 30 114 chr3 128454089 128454188 -99070390 + L2 LINE L2 356 443 -2871 2145 228 33 14 chr3 128454234 128454743 -99069835 + MLT1F LTR MaLR 12 530 -12 2133 280 78 25 chr3 128454751 128455391 -99069187 + L2 LINE L2 436 1122 -2192 1366 226 18 0 chr3 128455391 128455510 -99069068 + AluJb SINE Alu 1 116 -196 243 0 0 0 chr3 128455510 128455537 -99069041 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1366 226 18 0 chr3 128455537 128455700 -99068878 + AluJb SINE Alu 116 288 -24 2133 280 78 25 chr3 128455700 128455803 -99068775 + L2 LINE L2 1122 1218 -2096 454 200 121 21 chr3 128455803 128455955 -99068623 - L1MC4a LINE L1 -2 8015 7718 764 164 0 0 chr3 128455984 128456100 -99068478 - MER7A DNA MER2_type -1 335 220 1485 206 41 68 chr3 128456111 128456770 -99067808 - LTR9 LTR ERV1 -12 600 1 1299 158 47 39 chr3 128456770 128457004 -99067574 - MER7A DNA MER2_type -112 234 1 1564 165 54 65 chr3 128457005 128457071 -99067507 - L1MC4 LINE L1 -212 7830 7765 1782 146 39 4 chr3 128457071 128457351 -99067227 + AluSx SINE Alu 5 294 -18 1564 165 54 65 chr3 128457351 128457653 -99066925 - L1MC4 LINE L1 -277 7765 7466 346 255 0 11 chr3 128457654 128457748 -99066830 - L1MC4a LINE L1 -1904 5904 5812 * 4715 207 108 75 chr3 128457743 128458285 -99066293 - L1M4 LINE L1 -4948 1594 1071 1855 138 31 24 chr3 128458285 128458576 -99066002 - AluSx SINE Alu -18 294 2 4715 207 108 75 chr3 128458576 128458681 -99065897 - L1M4 LINE L1 -5471 1071 971 1336 142 73 4 chr3 128458681 128458928 -99065650 - L1MB3 LINE L1 -1 6182 5919 4715 207 108 75 chr3 128458928 128459354 -99065224 - L1M4 LINE L1 -5571 971 560 2291 100 13 0 chr3 128459354 128459384 -99065194 - AluSp SINE Alu 0 313 285 195 42 0 0 chr3 128459384 128459408 -99065170 + (TG)n Simple_repeat Simple_repeat 1 24 0 2291 100 13 0 chr3 128459408 128459686 -99064892 - AluSp SINE Alu -28 285 1 4715 207 108 75 chr3 128459686 128460153 -99064425 - L1M4 LINE L1 -5982 560 2 1155 221 77 89 chr3 128460153 128460443 -99064135 - L1MC4a LINE L1 -1979 5829 5537 2186 109 3 0 chr3 128460443 128460728 -99063850 - AluSx SINE Alu -26 286 1 1155 221 77 89 chr3 128460728 128460905 -99063673 - L1MC4a LINE L1 -2271 5537 5368 1934 133 10 23 chr3 128460905 128461205 -99063373 + AluSq SINE Alu 3 298 -15 1155 221 77 89 chr3 128461205 128461310 -99063268 - L1MC4a LINE L1 -2440 5368 5263 581 234 63 68 chr3 128461408 128461613 -99062965 + L2 LINE L2 1206 1409 -1905 2518 200 20 12 chr3 128461615 128462121 -99062457 - MER90 LTR ERV1 0 614 105 2359 112 0 0 chr3 128462230 128462542 -99062036 + AluSx SINE Alu 1 312 0 427 219 154 0 chr3 128462658 128462781 -99061797 - L1MC4 LINE L1 -62 7980 7839 250 267 0 0 chr3 128462813 128462873 -99061705 - L1MC4 LINE L1 -190 7852 7793 2254 95 0 0 chr3 128462875 128463192 -99061386 - AluSq SINE Alu 0 317 1 309 197 0 0 chr3 128463315 128463381 -99061197 + CT-rich Low_complexity Low_complexity 2 67 0 740 195 0 0 chr3 128463397 128463520 -99061058 - FLAM_C SINE Alu -20 123 1 3526 121 80 41 chr3 128463557 128463853 -99060725 - MER4B LTR ERV1 -2 608 325 1567 170 49 3 chr3 128463853 128463972 -99060606 + AluJb SINE Alu 1 113 -199 315 0 0 0 chr3 128463972 128464007 -99060571 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1567 170 49 3 chr3 128464007 128464175 -99060403 + AluJb SINE Alu 113 301 -11 3526 121 80 41 chr3 128464175 128464463 -99060115 - MER4B LTR ERV1 -285 325 1 2135 96 3 13 chr3 128464538 128464841 -99059737 + AluSq SINE Alu 1 300 -13 180 77 0 0 chr3 128465097 128465123 -99059455 + (CGGTG)n Simple_repeat Simple_repeat 4 29 0 320 304 69 0 chr3 128465922 128466024 -99058554 - L2 LINE L2 -14 3258 3150 272 283 61 0 chr3 128466029 128466128 -99058450 - MIR SINE MIR -102 160 56 419 216 23 0 chr3 128466131 128466219 -99058359 - LTR52 LTR ERVL -6 415 326 679 167 77 32 chr3 128466219 128466256 -99058322 - LTR52 LTR ERVL -55 366 332 2114 54 0 12 chr3 128466256 128466515 -99058063 - AluY SINE Alu -55 256 1 679 167 77 32 chr3 128466515 128466633 -99057945 - LTR52 LTR ERVL -89 332 204 264 147 221 29 chr3 128466633 128466701 -99057877 - HERVL74 LTR ERVL -2 3554 3474 1471 167 0 66 chr3 128466701 128466988 -99057590 + AluJo SINE Alu 1 268 -44 4844 185 34 43 chr3 128467031 128467525 -99057053 - HERVL74 LTR ERVL -1483 2089 1592 2301 98 0 25 chr3 128467525 128467843 -99056735 - AluSg SINE Alu 0 310 1 4844 185 34 43 chr3 128467843 128467954 -99056624 - HERVL74 LTR ERVL -1980 1592 1482 1502 227 3 3 chr3 128467954 128468249 -99056329 - AluJo SINE Alu -17 295 1 4844 185 34 43 chr3 128468249 128468728 -99055850 - HERVL74 LTR ERVL -2090 1482 975 946 177 25 49 chr3 128468730 128468933 -99055645 - HERVL74 LTR ERVL -2541 1015 818 2301 114 0 0 chr3 128468933 128469239 -99055339 + AluSx SINE Alu 1 306 -6 1983 145 0 37 chr3 128469305 128469629 -99054949 - AluJb SINE Alu 0 312 1 1821 105 86 4 chr3 128469743 128470010 -99054568 - AluSx SINE Alu -23 289 1 285 274 86 19 chr3 128470016 128470174 -99054404 - L1ME LINE L1 -341 5821 5649 406 297 47 28 chr3 128470177 128470389 -99054189 + L2 LINE L2 3098 3313 0 971 178 0 17 chr3 128470397 128470577 -99054001 + FRAM SINE Alu 1 174 -2 22 35 0 0 chr3 128471240 128471269 -99053309 + AT_rich Low_complexity Low_complexity 1 29 0 1884 141 43 20 chr3 128471662 128471779 -99052799 + AluJb SINE Alu 1 114 -198 189 0 0 0 chr3 128471779 128471800 -99052778 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 1884 141 43 20 chr3 128471800 128471986 -99052592 + AluJb SINE Alu 114 311 -1 2210 112 3 0 chr3 128472364 128472658 -99051920 - AluSq SINE Alu -18 295 1 438 271 205 7 chr3 128472868 128473019 -99051559 + MER5A DNA MER1_type 9 189 0 24 0 0 0 chr3 128473450 128473474 -99051104 + AT_rich Low_complexity Low_complexity 1 24 0 699 211 8 8 chr3 128473954 128474082 -99050496 + FLAM_A SINE Alu 1 128 -5 298 274 32 73 chr3 128474409 128474533 -99050045 + MIR SINE MIR 29 147 -115 25 0 0 0 chr3 128474749 128474774 -99049804 + AT_rich Low_complexity Low_complexity 1 25 0 1757 183 3 7 chr3 128474775 128475081 -99049497 + AluJo SINE Alu 1 305 -7 329 0 24 0 chr3 128475524 128475565 -99049013 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 6117 40 17 22 chr3 128475565 128476342 -99048236 - SVA Other Other -23 1363 591 2456 77 0 7 chr3 128477071 128477381 -99047197 - AluY SINE Alu -3 308 1 2215 117 10 0 chr3 128477789 128478097 -99046481 - AluSx SINE Alu -1 311 1 1030 119 12 6 chr3 128478143 128478326 -99046252 - AluSg/x SINE Alu 0 303 120 861 267 116 62 chr3 128478753 128479203 -99045375 + L1MEd LINE L1 12 485 -5634 527 239 56 97 chr3 128479256 128479742 -99044836 + L1MEd LINE L1 731 1196 -4923 1319 291 113 39 chr3 128479877 128480885 -99043693 - L2 LINE L2 -2 3311 1840 2062 124 3 0 chr3 128481309 128481620 -99042958 + AluSp SINE Alu 1 312 0 2193 123 3 3 chr3 128481701 128482009 -99042569 + AluSx SINE Alu 1 308 -4 1400 121 5 0 chr3 128482177 128482375 -99042203 - AluSg/x SINE Alu -21 289 91 316 243 21 79 chr3 128483247 128483387 -99041191 + L2 LINE L2 3180 3311 -2 21 89 0 0 chr3 128483702 128483758 -99040820 + AT_rich Low_complexity Low_complexity 1 56 0 2309 116 0 0 chr3 128483879 128484182 -99040396 + AluSx SINE Alu 1 303 -9 2407 91 0 0 chr3 128484639 128484947 -99039631 - AluSg SINE Alu -2 308 1 3815 223 181 36 chr3 128485096 128485277 -99039301 + L1MC4 LINE L1 6468 6621 -1421 186 43 0 0 chr3 128485277 128485300 -99039278 + (TGGA)n Simple_repeat Simple_repeat 3 25 0 3815 223 181 36 chr3 128485300 128485792 -99038786 + L1MC4 LINE L1 6621 7040 -1002 2132 121 3 7 chr3 128485792 128486089 -99038489 + AluSq SINE Alu 1 296 -17 3815 223 181 36 chr3 128486089 128486666 -99037912 + L1MC4 LINE L1 7040 7901 -141 698 205 8 0 chr3 128486726 128486848 -99037730 + FLAM_A SINE Alu 1 123 -10 250 176 0 29 chr3 128486994 128487062 -99037516 + CT-rich Low_complexity Low_complexity 4 69 0 467 327 255 16 chr3 128488501 128489177 -99035401 - L2 LINE L2 0 3313 2455 1835 134 46 0 chr3 128489227 128489510 -99035068 + AluSx SINE Alu 1 296 -16 768 199 75 59 chr3 128489995 128490054 -99034524 - MER5A DNA MER1_type 0 189 132 2281 118 0 0 chr3 128490054 128490360 -99034218 + AluSx SINE Alu 1 306 -6 768 199 75 59 chr3 128490360 128490486 -99034092 - MER5A DNA MER1_type -57 132 1 1063 154 0 0 chr3 128490581 128490762 -99033816 - AluSg/x SINE Alu 0 312 134 1936 113 0 85 chr3 128490762 128490924 -99033654 - AluSx SINE Alu -12 300 179 2156 120 0 3 chr3 128490924 128491223 -99033355 - AluSc SINE Alu -11 298 1 1936 113 0 85 chr3 128491223 128491388 -99033190 - AluSx SINE Alu -133 179 1 2100 219 50 30 chr3 128491400 128492061 -99032517 - L1M4 LINE L1 -2781 3365 2692 255 237 40 0 chr3 128492154 128492230 -99032348 + L1ME3A LINE L1 3422 3500 -2646 * 878 233 5 11 chr3 128492211 128492458 -99032120 + L1ME3A LINE L1 3427 3671 -2475 * 1423 244 33 12 chr3 128492452 128492558 -99032020 + L1ME3A LINE L1 4314 4416 -1730 2018 131 7 7 chr3 128492558 128492849 -99031729 - AluSg SINE Alu -19 291 1 1423 244 33 12 chr3 128492849 128493164 -99031414 + L1ME3A LINE L1 4416 4744 -1402 2114 104 14 0 chr3 128493339 128493626 -99030952 + AluSq SINE Alu 1 291 -22 1739 182 60 10 chr3 128493627 128494011 -99030567 + L1MB7 LINE L1 5781 6183 -1 2245 92 10 3 chr3 128494061 128494356 -99030222 - AluSp SINE Alu -16 297 1 22 0 0 0 chr3 128495230 128495252 -99029326 + AT_rich Low_complexity Low_complexity 1 22 0 1321 263 55 48 chr3 128496774 128497249 -99027329 - LTR16C LTR ERVL -3 488 11 2069 121 17 7 chr3 128497308 128497605 -99026973 + AluSx SINE Alu 3 302 -10 502 234 159 0 chr3 128497762 128497907 -99026671 - MIR3 SINE MIR -33 175 8 2022 124 10 7 chr3 128498062 128498352 -99026226 - AluSx SINE Alu -18 294 4 992 173 0 0 chr3 128498363 128498525 -99026053 - AluJo/FRAM SINE Alu -17 295 134 2145 115 6 16 chr3 128498525 128498837 -99025741 - AluSx SINE Alu -3 309 1 2538 180 132 35 chr3 128498973 128499701 -99024877 + L1ME3A LINE L1 5221 6011 -159 2284 116 0 0 chr3 128499703 128500006 -99024572 + AluSx SINE Alu 1 303 -9 401 0 20 0 chr3 128500725 128500774 -99023804 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 6213 32 4 19 chr3 128500774 128501519 -99023059 - SVA Other Other -23 1363 630 2408 80 0 10 chr3 128502248 128502559 -99022019 - AluY SINE Alu -3 308 1 2106 123 10 7 chr3 128502967 128503277 -99021301 - AluSx SINE Alu -1 311 1 409 220 169 22 chr3 128503763 128503941 -99020637 - L1MC/D LINE L1 -359 5811 5619 615 280 89 42 chr3 128503971 128504207 -99020371 - MIR SINE MIR -9 253 7 2181 117 0 10 chr3 128504432 128504741 -99019837 - AluSx SINE Alu -6 306 1 643 232 148 0 chr3 128506264 128506527 -99018051 + L1M4c LINE L1 2152 2453 -3931 842 144 0 0 chr3 128506527 128506645 -99017933 + FLAM_C SINE Alu 1 118 -25 1902 149 4 4 chr3 128506661 128506937 -99017641 + AluSg SINE Alu 1 276 -34 283 280 178 13 chr3 128507183 128507340 -99017238 + L1ME LINE L1 5574 5756 -365 2198 106 3 0 chr3 128507584 128507877 -99016701 - AluSp SINE Alu -19 294 1 2269 95 3 0 chr3 128507999 128508293 -99016285 - AluSp SINE Alu -18 295 1 1980 139 3 0 chr3 128508415 128508709 -99015869 - AluSp SINE Alu -18 295 1 1768 149 7 27 chr3 128508710 128509005 -99015573 + MER4B LTR ERV1 320 608 -2 740 195 0 0 chr3 128509042 128509165 -99015413 + FLAM_C SINE Alu 1 123 -20 342 182 0 0 chr3 128509181 128509247 -99015331 + GA-rich Low_complexity Low_complexity 2 67 0 2272 110 3 0 chr3 128509370 128509671 -99014907 + AluSx SINE Alu 1 302 -10 686 189 69 25 chr3 128509675 128509834 -99014744 + L1ME3A LINE L1 6005 6170 0 1043 90 14 0 chr3 128510428 128510572 -99014006 + AluSg/x SINE Alu 161 306 -6 1797 157 3 46 chr3 128510636 128510961 -99013617 - AluJb SINE Alu -1 311 1 2246 111 0 0 chr3 128511075 128511364 -99013214 - AluSx SINE Alu -23 289 1 2328 200 21 13 chr3 128511473 128511949 -99012629 + MER90 LTR ERV1 105 584 -30 2090 123 19 13 chr3 128512123 128512433 -99012145 + AluSx SINE Alu 1 312 0 2287 98 3 7 chr3 128512435 128512740 -99011838 + AluSx SINE Alu 1 304 -8 1586 134 91 14 chr3 128512932 128513208 -99011370 - AluJb SINE Alu -15 297 1 250 220 0 0 chr3 128513362 128513421 -99011157 + C-rich Low_complexity Low_complexity 1 59 0 323 206 10 10 chr3 128513496 128513593 -99010985 + AluY SINE Alu 204 300 -1 884 185 54 0 chr3 128513723 128513907 -99010671 + MLT1B LTR MaLR 197 390 0 2046 117 0 7 chr3 128514430 128514728 -99009850 - AluSg SINE Alu -14 296 1 666 215 62 0 chr3 128515037 128515232 -99009346 + AluSq SINE Alu 94 300 -13 343 346 88 26 chr3 128515390 128515618 -99008960 - L3 LINE CR1 -329 1248 1007 2120 113 6 26 chr3 128515620 128515931 -99008647 - AluSx SINE Alu -3 309 5 1104 113 7 0 chr3 128516469 128516619 -99007959 - AluSq/x SINE Alu -161 151 1 1851 169 17 0 chr3 128516624 128516920 -99007658 - AluJb SINE Alu -11 301 1 3916 217 70 39 chr3 128516984 128517161 -99007417 - L1M4 LINE L1 -2001 4145 3975 2453 61 0 3 chr3 128517161 128517458 -99007120 - AluY SINE Alu -15 296 1 3916 217 70 39 chr3 128517458 128518015 -99006563 - L1M4 LINE L1 -2171 3975 3437 1919 116 0 85 chr3 128518015 128518177 -99006401 - AluSx SINE Alu -12 300 179 2192 119 0 3 chr3 128518177 128518479 -99006099 - AluSc SINE Alu -8 301 1 1919 116 0 85 chr3 128518479 128518644 -99005934 - AluSx SINE Alu -133 179 1 3916 217 70 39 chr3 128518644 128519307 -99005271 - L1M4 LINE L1 -2709 3437 2703 802 233 5 11 chr3 128519467 128519714 -99004864 + L1MB7 LINE L1 3427 3671 -2475 * 3206 202 35 19 chr3 128519708 128519814 -99004764 + L1MB7 LINE L1 4314 4417 -1729 2255 106 0 3 chr3 128519814 128520106 -99004472 - AluSg SINE Alu -19 291 1 3206 202 35 19 chr3 128520106 128520470 -99004108 + L1MB7 LINE L1 4417 4774 -1372 2308 105 3 6 chr3 128520470 128520784 -99003794 + AluSq SINE Alu 1 313 0 3206 202 35 19 chr3 128520784 128521144 -99003434 + L1MB7 LINE L1 4774 5158 -988 1000 168 6 0 chr3 128521155 128521322 -99003256 + FAM SINE Alu 1 41 -8 4081 160 40 44 chr3 128521323 128521583 -99002995 + L1MB7 LINE L1 5164 5424 -760 7534 99 5 18 chr3 128521583 128522669 -99001909 - MER11C LTR ERVK 0 1071 1 4081 160 40 44 chr3 128522669 128523427 -99001151 + L1MB7 LINE L1 5424 6165 -19 582 312 5 47 chr3 128523462 128523677 -99000901 - MLT-int LTR MaLR -437 1298 1093 782 226 92 0 chr3 128523683 128523900 -99000678 - MST-int LTR MaLR -1043 608 372 2205 101 3 10 chr3 128523903 128524199 -99000379 - AluSx SINE Alu -18 294 1 1949 187 20 2 chr3 128524326 128524728 -98999850 - MLT-int LTR MaLR -1325 410 2 1477 205 132 17 chr3 128524730 128525140 -98999438 - MSTB2 LTR MaLR 0 457 1 374 299 130 7 chr3 128525421 128525575 -98999003 - L1MEd LINE L1 -4916 1203 1031 2246 207 103 11 chr3 128525683 128526502 -98998076 - L1M4 LINE L1 -3312 3645 2789 303 222 28 123 chr3 128526571 128526622 -98997956 - L1M4 LINE L1 -4492 2646 2592 2319 103 0 0 chr3 128526622 128526914 -98997664 - AluSg SINE Alu -18 292 1 303 222 28 123 chr3 128526914 128527074 -98997504 - L1M4 LINE L1 -4546 2592 2455 1870 144 10 14 chr3 128527090 128527381 -98997197 - AluSx SINE Alu -22 290 1 2044 240 62 24 chr3 128527421 128528327 -98996251 - L1M4 LINE L1 -4719 2238 1188 436 294 35 43 chr3 128528903 128529134 -98995444 - L1M4 LINE L1 -6620 239 11 3517 131 11 78 chr3 128529506 128529866 -98994712 + L1MA4 LINE L1 5614 5902 -398 1644 181 11 11 chr3 128529866 128530143 -98994435 + AluJo SINE Alu 2 278 -34 3517 131 11 78 chr3 128530143 128530517 -98994061 + L1MA4 LINE L1 5902 6299 -1 874 133 0 7 chr3 128530620 128530755 -98993823 + AluJo SINE Alu 1 134 -178 423 0 0 0 chr3 128530760 128530807 -98993771 + (CA)n Simple_repeat Simple_repeat 2 48 0 1773 162 0 36 chr3 128531167 128531285 -98993293 + AluJo SINE Alu 1 122 -190 2085 84 34 0 chr3 128531285 128531548 -98993030 + AluY SINE Alu 32 303 -8 1773 162 0 36 chr3 128531548 128531737 -98992841 + AluJo SINE Alu 122 297 -15 2296 109 3 0 chr3 128532164 128532475 -98992103 - AluSx SINE Alu 0 312 1 1107 172 78 4 chr3 128532551 128532795 -98991783 - L1MD1 LINE L1 -24 6218 5957 180 0 0 0 chr3 128532811 128532831 -98991747 + (TATG)n Simple_repeat Simple_repeat 1 20 0 1809 131 4 0 chr3 128532833 128533092 -98991486 - AluSx SINE Alu -18 294 35 502 208 110 71 chr3 128533193 128533287 -98991291 + MER5A DNA MER1_type 30 134 -55 2299 114 0 0 chr3 128533287 128533593 -98990985 - AluSx SINE Alu -6 306 1 502 208 110 71 chr3 128533593 128533652 -98990926 + MER5A DNA MER1_type 134 189 0 1815 145 53 0 chr3 128534138 128534420 -98990158 - AluSq SINE Alu -16 297 1 492 325 212 21 chr3 128534470 128535146 -98989432 + L2 LINE L2 2455 3313 0 250 176 0 29 chr3 128536586 128536654 -98987924 + GA-rich Low_complexity Low_complexity 4 69 0 665 197 8 0 chr3 128536800 128536922 -98987656 - FLAM_A SINE Alu -10 123 1 3309 221 182 37 chr3 128536982 128537559 -98987019 - L1MC4 LINE L1 -141 7901 7409 2142 121 3 7 chr3 128537559 128537856 -98986722 - AluSq SINE Alu -17 296 1 3309 221 182 37 chr3 128537856 128538348 -98986230 - L1MC4 LINE L1 -633 7409 6990 186 43 0 0 chr3 128538348 128538371 -98986207 + (TCCA)n Simple_repeat Simple_repeat 3 25 0 3309 221 182 37 chr3 128538371 128538552 -98986026 - L1MC4 LINE L1 -1052 6990 6468 2363 94 0 0 chr3 128538702 128539009 -98985569 + AluSg SINE Alu 1 307 -3 2403 95 0 0 chr3 128539466 128539770 -98984808 - AluSq SINE Alu -9 304 1 316 276 55 61 chr3 128540128 128540309 -98984269 - L1ME1 LINE L1 -217 5949 5770 289 193 0 0 chr3 128540314 128540371 -98984207 - L1ME1 LINE L1 -2062 5746 5690 666 271 89 42 chr3 128540464 128540700 -98983878 - MIR SINE MIR -9 253 7 2177 117 0 10 chr3 128540925 128541234 -98983344 - AluSx SINE Alu -6 306 1 2240 182 45 150 chr3 128542764 128543019 -98981559 + L1M4c LINE L1 2161 2441 -3941 2106 148 0 0 chr3 128543019 128543317 -98981261 + AluJo SINE Alu 1 298 -14 2240 182 45 150 chr3 128543317 128543641 -98980937 + L1M4c LINE L1 2441 2797 -3585 722 154 0 8 chr3 128543641 128543758 -98980820 + AluJb SINE Alu 3 118 -194 2240 182 45 150 chr3 128543758 128544327 -98980251 + L1M4c LINE L1 2797 3319 -3063 2542 45 6 22 chr3 128544327 128544640 -98979938 + AluY SINE Alu 1 308 -3 2240 182 45 150 chr3 128544640 128544652 -98979926 + L1M4c LINE L1 3319 3331 -3051 189 171 0 0 chr3 128544674 128544709 -98979869 + C-rich Low_complexity Low_complexity 2 36 0 334 235 45 0 chr3 128546409 128546541 -98978037 + L1M4c LINE L1 3309 3446 -2936 2377 66 7 3 chr3 128546557 128546859 -98977719 - AluY SINE Alu -8 303 1 1191 155 26 42 chr3 128547345 128547633 -98976945 - AluSx SINE Alu 0 305 22 318 50 0 0 chr3 128547805 128547820 -98976758 + (TG)n Simple_repeat Simple_repeat 1 55 0 318 50 0 0 chr3 128547820 128547860 -98976718 + (TG)n Simple_repeat Simple_repeat 2 41 0 886 185 54 0 chr3 128547929 128548113 -98976465 + MLT1B LTR MaLR 197 390 0 2289 102 0 3 chr3 128548628 128548932 -98975646 - AluSg SINE Alu -7 303 1 349 299 119 22 chr3 128549455 128549589 -98974989 + MIR3 SINE MIR 16 162 -46 24 32 0 0 chr3 128549881 128549912 -98974666 + AT_rich Low_complexity Low_complexity 1 31 0 574 287 102 37 chr3 128551867 128551921 -98972657 - MIR SINE MIR -1 261 212 6599 125 63 20 chr3 128551921 128553037 -98971541 - Tigger3b DNA MER2_type -1797 1231 61 2159 121 0 3 chr3 128553037 128553335 -98971243 + AluSq SINE Alu 1 297 -16 6599 125 63 20 chr3 128553335 128553399 -98971179 - Tigger3b DNA MER2_type -2967 61 1 574 287 102 37 chr3 128553399 128553560 -98971018 - MIR SINE MIR -50 212 32 778 244 100 7 chr3 128553618 128553888 -98970690 + L1MC4 LINE L1 6748 7042 -1000 2104 126 3 13 chr3 128553900 128554209 -98970369 + AluSg SINE Alu 1 306 -4 203 133 0 0 chr3 128554397 128554427 -98970151 + (GAAA)n Simple_repeat Simple_repeat 1 30 0 2241 104 3 31 chr3 128555761 128556079 -98968499 + AluSc SINE Alu 1 309 0 2073 105 24 3 chr3 128556092 128556387 -98968191 + AluSx SINE Alu 1 301 -11 208 184 26 0 chr3 128556456 128556494 -98968084 - L3 LINE CR1 -15 1562 1524 * 566 298 50 12 chr3 128556461 128556622 -98967956 - MIR3 SINE MIR -25 183 17 1676 136 45 16 chr3 128556893 128557201 -98967377 - L1MB7 LINE L1 -6 6178 5862 232 254 73 0 chr3 128557457 128557512 -98967066 - L2 LINE L2 0 3313 3255 330 326 109 11 chr3 128558048 128558223 -98966355 + MIR SINE MIR 6 197 -65 216 0 0 0 chr3 128558327 128558351 -98966227 + (TAA)n Simple_repeat Simple_repeat 2 25 0 2173 130 0 0 chr3 128558385 128558684 -98965894 - AluSx SINE Alu -13 299 1 21 89 0 0 chr3 128558805 128558861 -98965717 + AT_rich Low_complexity Low_complexity 1 56 0 333 250 21 79 chr3 128559176 128559316 -98965262 - L2 LINE L2 -2 3311 3180 21 0 0 0 chr3 128560097 128560118 -98964460 + AT_rich Low_complexity Low_complexity 1 21 0 520 312 41 9 chr3 128562325 128562543 -98962035 - L2 LINE L2 -1152 2162 1938 437 326 53 49 chr3 128562637 128562922 -98961656 - L2 LINE L2 -448 2866 2581 2368 86 0 0 chr3 128564180 128564472 -98960106 + AluSx SINE Alu 1 292 -20 363 187 88 0 chr3 128564981 128565072 -98959506 + MER94 DNA DNA 12 110 -24 397 357 16 8 chr3 128565102 128565228 -98959350 - L2 LINE L2 -31 3241 3115 1849 120 29 7 chr3 128565568 128565877 -98958701 - MER58B DNA MER1_type 0 341 26 2151 107 3 0 chr3 128566255 128566568 -98958010 - AluSx SINE Alu 0 312 1 1910 141 10 27 chr3 128566860 128567159 -98957419 - AluJo SINE Alu -18 294 1 21 0 0 0 chr3 128567159 128567180 -98957398 + AT_rich Low_complexity Low_complexity 1 21 0 213 208 83 0 chr3 128567372 128567420 -98957158 + L2 LINE L2 3203 3254 -18 2252 84 11 0 chr3 128568829 128569115 -98955463 + AluSp SINE Alu 9 297 -16 2254 167 42 22 chr3 128569169 128569550 -98955028 - L1MB7 LINE L1 -7 6177 5782 2180 97 10 3 chr3 128569550 128569840 -98954738 - AluSp SINE Alu -21 292 1 2254 167 42 22 chr3 128569840 128569956 -98954622 - L1MB7 LINE L1 -402 5782 5670 657 150 0 17 chr3 128569958 128570078 -98954500 - L1MB7 LINE L1 -575 5609 5492 1991 133 38 51 chr3 128570090 128570481 -98954097 - L1MA9 LINE L1 0 6312 5927 1559 239 52 4 chr3 128570481 128570999 -98953579 - L1M4 LINE L1 -2348 3798 3256 32 26 0 0 chr3 128571248 128571287 -98953291 + AT_rich Low_complexity Low_complexity 1 39 0 1742 141 38 24 chr3 128571359 128571650 -98952928 + AluJo SINE Alu 1 295 -17 1137 161 0 0 chr3 128572141 128572309 -98952269 + AluSx SINE Alu 1 168 -144 195 42 0 0 chr3 128572328 128572352 -98952226 + (A)n Simple_repeat Simple_repeat 1 24 0 722 279 57 0 chr3 128573628 128573872 -98950706 + MIR SINE MIR 2 259 -3 2026 222 76 15 chr3 128575033 128575650 -98948928 + L1ME3A LINE L1 5508 6162 -8 1715 151 47 34 chr3 128575764 128576062 -98948516 + AluJo SINE Alu 1 302 -10 1893 135 0 36 chr3 128576237 128576541 -98948037 - AluSx SINE Alu -19 293 1 1779 156 24 10 chr3 128577233 128577528 -98947050 - AluJo SINE Alu -11 301 3 29 60 0 0 chr3 128577563 128577613 -98946965 + AT_rich Low_complexity Low_complexity 1 50 0 2181 108 7 7 chr3 128579074 128579380 -98945198 - AluSq SINE Alu -7 306 1 16628 188 25 19 chr3 128579462 128580604 -98943974 - L1P4 LINE L1 -19 6787 5652 2074 156 7 3 chr3 128580604 128580911 -98943667 - AluJb SINE Alu -4 308 1 16628 188 25 19 chr3 128580911 128583749 -98940829 - L1P4 LINE L1 -1154 5652 2793 1851 117 64 0 chr3 128583749 128584049 -98940529 + AluY SINE Alu 3 319 0 16628 188 25 19 chr3 128584049 128585069 -98939509 - L1P4 LINE L1 -4013 2793 1780 2815 198 40 31 chr3 128585169 128585812 -98938766 - L1P4 LINE L1 -4904 1883 1235 417 337 29 13 chr3 128586753 128587060 -98937518 - L1PA12 LINE L1 -6525 1060 7 3734 183 30 0 chr3 128587204 128587911 -98936667 - L1MB3 LINE L1 -1 6182 5455 284 204 143 141 chr3 128589669 128590113 -98934465 + L1MC5 LINE L1 7456 7903 -58 2008 97 8 0 chr3 128590113 128590371 -98934207 - AluSg SINE Alu -14 296 37 284 204 143 141 chr3 128590371 128590386 -98934192 + L1MC5 LINE L1 7903 7916 -45 1533 194 0 55 chr3 128591038 128591200 -98933378 - AluJo SINE Alu -19 293 155 2153 129 3 10 chr3 128591200 128591511 -98933067 - AluSx SINE Alu -3 309 1 1533 194 0 55 chr3 128591511 128591658 -98932920 - AluJo SINE Alu -157 155 1 2281 101 3 10 chr3 128592518 128592824 -98931754 - AluSg SINE Alu -6 304 1 580 212 62 62 chr3 128592825 128593004 -98931574 - MIR SINE MIR -6 256 78 325 279 23 0 chr3 128593267 128593353 -98931225 + L1MC4 LINE L1 6613 6700 -1342 998 157 23 23 chr3 128594475 128594647 -98929931 - FRAM SINE Alu -7 169 1 318 278 46 0 chr3 128594673 128594781 -98929797 + Charlie8 DNA MER1_type 153 265 -2152 189 0 0 0 chr3 128595159 128595180 -98929398 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2567 73 0 0 chr3 128595504 128595807 -98928771 + AluSp SINE Alu 1 303 -10 285 207 0 0 chr3 128596021 128596079 -98928499 + MER116 DNA Mariner 17 74 -6 487 298 11 26 chr3 128596291 128596482 -98928096 - MER5A DNA MER1_type -1 188 1 364 231 39 10 chr3 128598323 128598427 -98926151 - L1MC4a LINE L1 -1886 5922 5816 460 247 67 13 chr3 128598469 128598619 -98925959 - L1MC4a LINE L1 -1879 5929 5772 230 222 0 0 chr3 128598762 128598816 -98925762 - HAL1 LINE L1 -630 1877 1824 681 224 149 45 chr3 128598988 128599516 -98925062 - HAL1 LINE L1 -777 1730 1258 2347 104 0 0 chr3 128599516 128599814 -98924764 - AluSx SINE Alu -14 298 1 1897 144 10 3 chr3 128599817 128600109 -98924469 - AluJb SINE Alu -18 294 1 681 224 149 45 chr3 128600109 128601001 -98923577 - HAL1 LINE L1 -1250 1257 19 364 295 64 35 chr3 128601002 128601175 -98923403 + L2 LINE L2 1824 2001 -1313 1267 171 4 0 chr3 128601258 128601492 -98923086 - L1MB7 LINE L1 -86 6098 5864 877 137 0 0 chr3 128601526 128601650 -98922928 + AluSq/x SINE Alu 1 124 -189 874 251 59 46 chr3 128601775 128601880 -98922698 + L2 LINE L2 2126 2228 -1086 1237 177 146 12 chr3 128601880 128602202 -98922376 - MLT1A1 LTR MaLR 0 365 1 874 251 59 46 chr3 128602202 128602419 -98922159 + L2 LINE L2 2228 2452 -862 587 318 13 7 chr3 128602451 128602605 -98921973 + L2 LINE L2 3114 3268 -4 194 315 169 0 chr3 128602804 128602893 -98921685 - L2 LINE L2 -334 2979 2876 303 284 139 84 chr3 128605548 128605586 -98918992 - L1M2 LINE L1 -5833 1016 982 213 108 0 0 chr3 128605586 128605623 -98918955 + (CGGGG)n Simple_repeat Simple_repeat 3 39 0 303 284 139 84 chr3 128605623 128605929 -98918649 - L1M2 LINE L1 -5867 982 653 1861 174 17 14 chr3 128608151 128608501 -98916077 - MLT1A1 LTR MaLR 0 365 15 7459 188 42 43 chr3 128608504 128609748 -98914830 - MLT1A1-int LTR MaLR -7 1728 486 2424 78 3 0 chr3 128609748 128610043 -98914535 + AluSp SINE Alu 1 296 -17 7459 188 42 43 chr3 128610043 128610529 -98914049 - MLT1A1-int LTR MaLR -1249 486 1 2087 164 19 6 chr3 128610529 128610889 -98913689 - MLT1A1 LTR MaLR 0 365 1 357 24 0 0 chr3 128613252 128613294 -98911284 + (TG)n Simple_repeat Simple_repeat 2 43 0 2254 104 0 17 chr3 128613854 128614151 -98910427 + AluSg SINE Alu 1 292 -18 183 291 13 25 chr3 128615495 128615574 -98909004 + MIR3 SINE MIR 128 205 -3 279 237 108 21 chr3 128615932 128616025 -98908553 - L2 LINE L2 0 3272 3172 260 303 68 58 chr3 128616833 128617026 -98907552 + MIR SINE MIR 15 216 -46 1567 147 61 67 chr3 128621353 128621666 -98902912 + AluJb SINE Alu 1 311 -1 195 243 54 122 chr3 128623396 128623474 -98901104 - L2 LINE L2 -170 3143 3078 2198 114 0 19 chr3 128623474 128623790 -98900788 - AluSx SINE Alu -2 310 1 195 243 54 122 chr3 128623790 128623859 -98900719 - L2 LINE L2 -235 3078 3006 2261 115 0 3 chr3 128624712 128625016 -98899562 + AluSx SINE Alu 1 303 -9 269 279 0 0 chr3 128625252 128625320 -98899258 + CT-rich Low_complexity Low_complexity 5 72 0 6265 134 24 24 chr3 128625395 128626349 -98898229 - L1MA4 LINE L1 -6 6476 5523 1453 181 17 38 chr3 128626349 128626636 -98897942 - AluJb SINE Alu -20 292 12 6265 134 24 24 chr3 128626636 128626729 -98897849 - L1MA4 LINE L1 -959 5523 5431 2373 143 36 21 chr3 128626729 128627150 -98897428 - MSTB1 LTR MaLR -2 430 4 6265 134 24 24 chr3 128627150 128628223 -98896355 - L1MA4 LINE L1 -1051 5431 4351 665 202 16 0 chr3 128628223 128628347 -98896231 - AluJb SINE Alu -186 126 1 552 156 10 0 chr3 128628347 128628443 -98896135 - L1MA4 LINE L1 -1971 4357 4261 6696 22 4 0 chr3 128628456 128629274 -98895304 - L1PA4 LINE L1 -1 6154 5334 6678 217 112 25 chr3 128629276 128632241 -98892337 - L1MA4 LINE L1 -2206 4122 839 2209 116 3 0 chr3 128632241 128632542 -98892036 - AluSx SINE Alu -10 302 1 6678 217 112 25 chr3 128632542 128632771 -98891807 - L1MA4 LINE L1 -5489 839 632 207 167 0 0 chr3 128632771 128632807 -98891771 + CT-rich Low_complexity Low_complexity 2 37 0 567 281 350 6 chr3 128633408 128633768 -98890810 - L2 LINE L2 0 3313 2830 1863 158 22 19 chr3 128633899 128634210 -98890368 + AluSx SINE Alu 1 312 0 218 369 46 8 chr3 128634268 128634398 -98890180 + MIR SINE MIR 20 154 -108 431 264 48 60 chr3 128634581 128634748 -98889830 - MIR SINE MIR -26 236 72 1143 149 44 6 chr3 128635011 128635192 -98889386 + AluSg/x SINE Alu 79 266 -44 21 57 0 0 chr3 128635430 128635465 -98889113 + AT_rich Low_complexity Low_complexity 1 35 0 291 272 21 97 chr3 128635467 128635746 -98888832 + L1ME3A LINE L1 5903 6160 -10 425 196 6 17 chr3 128637903 128638024 -98886554 + MLT1H LTR MaLR 52 138 -271 323 184 73 81 chr3 128638126 128638262 -98886316 + MLT1J2 LTR MaLR 313 447 -3 434 306 204 10 chr3 128639990 128640284 -98884294 + L2 LINE L2 1998 2348 -966 293 286 321 8 chr3 128640275 128640537 -98884041 + L2 LINE L2 2963 3306 -7 * 619 279 53 63 chr3 128641666 128642079 -98882499 + L1MC3 LINE L1 -105 303 -5604 2671 228 113 52 chr3 128642362 128643410 -98881168 + L1MC3 LINE L1 476 1459 -4967 1134 186 42 137 chr3 128643410 128643841 -98880737 + MLT1B LTR MaLR 1 390 0 2671 228 113 52 chr3 128643841 128644389 -98880189 + L1MC3 LINE L1 1459 1972 -4454 612 246 0 0 chr3 128644389 128644503 -98880075 - FLAM_A SINE Alu -18 115 2 2671 228 113 52 chr3 128644503 128644568 -98880010 + L1MC3 LINE L1 1972 2032 -4394 2276 92 0 0 chr3 128644568 128644850 -98879728 + AluSg SINE Alu 1 282 -28 2671 228 113 52 chr3 128644850 128645015 -98879563 + L1MC3 LINE L1 2032 2407 -4019 1134 68 0 0 chr3 128645020 128645153 -98879425 + AluSg1 SINE Alu 1 133 -176 2120 112 13 3 chr3 128645153 128645456 -98879122 + AluSp SINE Alu 1 306 -7 314 240 20 0 chr3 128645456 128645594 -98878984 + L1MC3 LINE L1 2396 2475 -3951 2310 82 0 10 chr3 128645608 128645902 -98878676 - AluY SINE Alu -20 291 1 2569 230 60 39 chr3 128645915 128646510 -98878068 + L1MC3 LINE L1 2724 3352 -3074 1989 176 0 3 chr3 128646510 128646817 -98877761 + AluJo SINE Alu 1 306 -6 2569 230 60 39 chr3 128646817 128647280 -98877298 + L1MC3 LINE L1 3352 3804 -2622 1866 236 71 9 chr3 128647388 128648018 -98876560 + L1MC3 LINE L1 4123 4791 -1635 1930 237 59 7 chr3 128648019 128648475 -98876103 + L1 LINE L1 5 484 -5657 * 2348 147 46 8 chr3 128648473 128648567 -98876011 + L1 LINE L1 3526 3615 -2595 1401 51 0 0 chr3 128648567 128648742 -98875836 + L1PA4 LINE L1 5980 6154 -1 2348 147 46 8 chr3 128648742 128649123 -98875455 + L1 LINE L1 3615 4019 -2191 813 122 9 0 chr3 128649155 128649270 -98875308 + AluJb SINE Alu 3 118 -194 2364 208 55 90 chr3 128649272 128649600 -98874978 + L1MC3 LINE L1 4927 5265 -1161 2226 115 6 16 chr3 128649600 128649913 -98874665 + AluSx SINE Alu 1 310 -2 2364 208 55 90 chr3 128649913 128650580 -98873998 + L1MC3 LINE L1 5265 4960 -1466 2025 135 10 3 chr3 128650580 128650869 -98873709 - AluJo SINE Alu -7 305 15 2364 208 55 90 chr3 128650869 128651571 -98873007 + L1MC3 LINE L1 4959 5683 -743 4383 85 23 6 chr3 128651607 128652558 -98872020 - L1PA8 LINE L1 -456 5675 4707 3617 65 0 0 chr3 128652557 128653033 -98871545 + L1PA8 LINE L1 5676 6151 -21 * 2173 184 75 54 chr3 128653043 128653723 -98870855 + L1MC3 LINE L1 6584 7277 -788 2385 164 93 13 chr3 128653724 128654026 -98870552 + Tigger3b DNA MER2_type 1 354 -2674 2425 92 0 0 chr3 128654026 128654331 -98870247 + AluSp SINE Alu 1 305 -8 2385 164 93 13 chr3 128654331 128654492 -98870086 + Tigger3b DNA MER2_type 354 501 -730 8949 142 42 11 chr3 128654493 128656072 -98868506 + ERVL-B1 LTR ERVL 4131 5757 -7 2344 154 107 41 chr3 128656072 128656560 -98868018 + MLT2B1 LTR ERVL 1 520 0 1567 185 10 24 chr3 128656657 128656954 -98867624 - AluJo SINE Alu -19 293 1 213 219 0 0 chr3 128657123 128657164 -98867414 + (TTCA)n Simple_repeat Simple_repeat 3 43 0 345 242 12 200 chr3 128657175 128657505 -98867073 - L2 LINE L2 -52 3220 2953 31 44 0 0 chr3 128658805 128658850 -98865728 + AT_rich Low_complexity Low_complexity 1 45 0 651 211 0 0 chr3 128660035 128660158 -98864420 + FLAM_C SINE Alu 1 123 -20 22 0 0 0 chr3 128660245 128660267 -98864311 + AT_rich Low_complexity Low_complexity 1 22 0 2083 138 0 0 chr3 128662215 128662511 -98862067 + AluSx SINE Alu 1 296 -16 362 39 19 0 chr3 128662636 128662688 -98861890 + (TA)n Simple_repeat Simple_repeat 1 53 0 223 45 63 63 chr3 128664072 128664183 -98860395 + (TA)n Simple_repeat Simple_repeat 1 111 0 345 252 92 12 chr3 128664591 128664841 -98859737 + L1ME LINE L1 5084 5350 -801 3956 114 82 20 chr3 128664883 128665591 -98858987 - Tigger3(Golem) DNA MER2_type -1 3028 2277 603 222 0 0 chr3 128665582 128665690 -98858888 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 284 153 0 34 chr3 128665702 128665761 -98858817 + L1ME LINE L1 5384 5440 -681 589 209 68 42 chr3 128665776 128665967 -98858611 + L1ME LINE L1 5629 5824 -297 203 254 95 0 chr3 128666009 128666072 -98858506 - MER5B DNA MER1_type -33 145 77 210 294 73 55 chr3 128667623 128667732 -98856846 - L2 LINE L2 -4 3268 3158 536 171 191 13 chr3 128668204 128668271 -98856307 + MER112 DNA MER1_type 5 59 -201 180 0 0 0 chr3 128668271 128668291 -98856287 + (TG)n Simple_repeat Simple_repeat 2 21 0 536 171 191 13 chr3 128668291 128668375 -98856203 + MER112 DNA MER1_type 59 183 -77 2026 146 13 0 chr3 128669016 128669324 -98855254 + AluJb SINE Alu 1 312 0 194 245 0 19 chr3 128670715 128670768 -98853810 + MER5B DNA MER1_type 96 147 -31 224 268 0 18 chr3 128670773 128670829 -98853749 + MER5A DNA MER1_type 111 165 -24 345 338 44 38 chr3 128670886 128671046 -98853532 + L2 LINE L2 3112 3272 0 355 159 11 23 chr3 128671459 128671547 -98853031 - L1PB2 LINE L1 -2 6149 6063 500 167 56 9 chr3 128672457 128672565 -98852013 + MIR3 SINE MIR 81 193 -15 21 0 0 0 chr3 128673151 128673172 -98851406 + AT_rich Low_complexity Low_complexity 1 21 0 181 308 0 0 chr3 128673496 128673535 -98851043 + L2 LINE L2 3139 3177 -95 1308 92 0 22 chr3 128673738 128673923 -98850655 + L1PA8A LINE L1 5948 6128 -3 738 174 0 0 chr3 128674372 128674522 -98850056 - FLAM_A SINE Alu 0 150 1 420 99 0 28 chr3 128675718 128675789 -98848789 + MADE1 DNA Mariner 1 69 -11 218 244 0 0 chr3 128676554 128676595 -98847983 + polypurine Low_complexity Low_complexity 1 41 0 211 351 42 68 chr3 128676946 128677137 -98847441 - MIR SINE MIR -45 217 32 25 0 0 0 chr3 128677494 128677519 -98847059 + AT_rich Low_complexity Low_complexity 1 25 0 10545 30 9 0 chr3 128678876 128680910 -98843668 + L1PA4 LINE L1 4106 6152 -3 426 232 49 30 chr3 128681372 128681536 -98843042 - L1MC5 LINE L1 -103 7858 7692 2197 107 40 0 chr3 128683384 128683682 -98840896 + AluSg SINE Alu 1 310 0 1526 186 32 46 chr3 128684134 128684326 -98840252 + L1MC4a LINE L1 6228 6414 -1394 2622 52 0 0 chr3 128684326 128684635 -98839943 - AluY SINE Alu -2 309 1 1526 186 32 46 chr3 128684635 128684812 -98839766 + L1MC4a LINE L1 6414 6592 -1216 195 100 0 0 chr3 128684816 128684846 -98839732 + (TA)n Simple_repeat Simple_repeat 1 30 0 4669 210 43 51 chr3 128684859 128686234 -98838344 + L1MC4a LINE L1 6518 7807 -6 610 210 108 6 chr3 128688719 128688879 -98835699 - L1MC3 LINE L1 -463 7340 7184 21 82 0 0 chr3 128689045 128689094 -98835484 + AT_rich Low_complexity Low_complexity 1 49 0 1153 111 0 23 chr3 128689139 128689311 -98835267 - AluSg/x SINE Alu -5 307 140 588 280 10 10 chr3 128689405 128689598 -98834980 - L1ME LINE L1 -397 5724 5532 563 280 103 68 chr3 128690253 128690707 -98833871 + L1ME LINE L1 5339 5808 -313 23 0 0 0 chr3 128692232 128692255 -98832323 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr3 128692867 128692909 -98831669 + AT_rich Low_complexity Low_complexity 1 42 0 192 77 0 0 chr3 128693156 128693182 -98831396 + (GAAA)n Simple_repeat Simple_repeat 2 27 0 1768 195 32 65 chr3 128693184 128693677 -98830901 - L1ME1 LINE L1 -5 6161 5685 1739 157 46 6 chr3 128693677 128694001 -98830577 + MER2 DNA MER2_type 1 337 -8 1320 234 9 3 chr3 128694002 128694303 -98830275 - L1ME1 LINE L1 -505 5661 5365 1327 164 14 0 chr3 128694334 128694541 -98830037 + Tigger3b DNA MER2_type 1 210 -1021 1500 59 0 20 chr3 128694542 128694746 -98829832 - L1PA11 LINE L1 -383 5785 5586 2633 79 35 0 chr3 128694746 128695107 -98829471 + L1PA11 LINE L1 5796 6174 0 5467 121 74 11 chr3 128695142 128695279 -98829299 + Tigger3b DNA MER2_type 198 325 -2703 1707 154 48 14 chr3 128695279 128695572 -98829006 + AluJo SINE Alu 1 303 -9 5467 121 74 11 chr3 128695572 128696407 -98828171 + Tigger3b DNA MER2_type 325 1231 0 1252 176 37 111 chr3 128696407 128696894 -98827684 - L1MEc LINE L1 -3611 2604 2191 497 241 0 7 chr3 128696875 128697012 -98827566 - L1ME1 LINE L1 -2116 4030 3895 * 853 309 86 63 chr3 128697177 128697733 -98826845 + L3 LINE CR1 1006 1574 -3 922 208 181 27 chr3 128698247 128698545 -98826033 - MER2 DNA MER2_type 0 344 1 3158 161 23 72 chr3 128698714 128699440 -98825138 - LTR8 LTR ERV1 0 691 1 303 140 0 0 chr3 128699631 128699681 -98824897 + (TCCC)n Simple_repeat Simple_repeat 3 52 0 2093 72 47 29 chr3 128699683 128699984 -98824594 - AluSp SINE Alu 0 306 1 1554 159 100 4 chr3 128699988 128700259 -98824319 - AluJb SINE Alu -15 297 1 224 253 33 44 chr3 128700275 128700366 -98824212 - MIR SINE MIR -75 187 98 303 212 5 5 chr3 128700382 128700469 -98824109 + FLAM SINE Alu 71 128 -5 1875 162 6 16 chr3 128700727 128701041 -98823537 - AluSx SINE Alu -1 311 1 1690 184 3 7 chr3 128701293 128701581 -98822997 + AluJo SINE Alu 1 287 -25 861 144 0 0 chr3 128701589 128701707 -98822871 + FLAM_C SINE Alu 1 118 -25 26 0 0 0 chr3 128701707 128701733 -98822845 + AT_rich Low_complexity Low_complexity 1 26 0 252 310 129 0 chr3 128701917 128702033 -98822545 - L2 LINE L2 -4 3309 3179 1185 181 3 105 chr3 128702239 128702543 -98822035 + AluJo SINE Alu 19 291 -21 680 253 34 44 chr3 128703265 128703562 -98821016 - L1MC5 LINE L1 -109 7852 7559 897 170 42 106 chr3 128703562 128703874 -98820704 + MER33 DNA MER1_type 32 323 -1 404 155 60 0 chr3 128703875 128703959 -98820619 - L1MC5 LINE L1 -624 7337 7249 939 171 75 0 chr3 128704219 128704406 -98820172 + MER3 DNA MER1_type 5 205 -4 443 373 8 0 chr3 128705129 128705247 -98819331 + L2 LINE L2 3134 3252 -20 759 135 0 115 chr3 128705453 128705541 -98819037 + MER58A DNA MER1_type 1 65 -276 2169 141 0 0 chr3 128705541 128705846 -98818732 - AluSx SINE Alu -7 305 1 759 135 0 115 chr3 128705846 128705913 -98818665 + MER58A DNA MER1_type 65 138 -86 4274 92 95 39 chr3 128705923 128706817 -98817761 + Tigger3b DNA MER2_type 5 948 -284 1285 80 0 0 chr3 128706868 128707031 -98817547 - AluSc SINE Alu -7 302 140 874 141 86 133 chr3 128707036 128707291 -98817287 - MLT1B LTR MaLR -197 193 3 353 277 43 65 chr3 128707526 128707710 -98816868 + MLT1J LTR MaLR 1 180 -331 329 285 135 48 chr3 128707813 128707893 -98816685 + L1M4 LINE L1 3522 3594 -2552 2011 37 0 0 chr3 128707893 128708135 -98816443 + L1PA5 LINE L1 5912 6153 -1 329 285 135 48 chr3 128708135 128708261 -98816317 + L1M4 LINE L1 3594 3746 -2400 245 111 0 139 chr3 128708266 128708338 -98816240 + LTR66 LTR ERVL 394 455 -155 269 252 178 9 chr3 128708497 128708604 -98815974 - L2 LINE L2 -226 3087 2963 469 289 87 20 chr3 128708779 128709077 -98815501 + L1M4 LINE L1 4108 4425 -1721 282 276 32 11 chr3 128709076 128709196 -98815382 + L1M4 LINE L1 5450 5575 -587 * 1623 154 47 70 chr3 128709196 128709422 -98815156 - MSTB LTR MaLR 0 426 209 1879 126 14 0 chr3 128709422 128709700 -98814878 + AluSx SINE Alu 1 282 -30 1623 154 47 70 chr3 128709700 128709816 -98814762 - MSTB LTR MaLR -217 209 92 1001 178 81 0 chr3 128709808 128709982 -98814596 - MER1B DNA MER1_type -109 188 1 * 1664 131 21 106 chr3 128710285 128710614 -98813964 + AluYb8 SINE Alu 1 301 -17 210 270 80 60 chr3 128711788 128711888 -98812690 - MIR SINE MIR -55 207 106 2157 126 10 0 chr3 128713213 128713515 -98811063 - AluSx SINE Alu -7 305 1 182 329 186 7 chr3 128713566 128713706 -98810872 + L3 LINE CR1 110 274 -1303 326 191 128 11 chr3 128713713 128713807 -98810771 + MLT1L LTR MaLR 150 254 -361 490 275 45 27 chr3 128713919 128714141 -98810437 + MLT1L LTR MaLR 390 615 0 540 308 62 9 chr3 128714280 128714445 -98810133 + L3 LINE CR1 692 874 -703 2098 122 0 10 chr3 128714445 128714757 -98809821 + AluSx SINE Alu 3 311 -1 540 308 62 9 chr3 128714757 128714818 -98809760 + L3 LINE CR1 874 930 -647 985 296 50 35 chr3 128714818 128715252 -98809326 + LTR16A LTR ERVL 1 440 -10 2398 317 85 28 chr3 128715252 128716778 -98807800 + HERV16 LTR ERVL 1985 3628 -2136 2253 106 0 0 chr3 128717201 128717502 -98807076 - AluSq SINE Alu -12 301 1 735 306 0 0 chr3 128717624 128717797 -98806781 + HERV16 LTR ERVL 4171 4343 -1421 459 139 116 12 chr3 128717983 128718069 -98806509 - MLT1B LTR MaLR -275 115 21 1038 187 44 159 chr3 128718069 128718546 -98806032 - L1M4 LINE L1 -1248 4898 4477 3310 158 30 12 chr3 128718560 128719136 -98805442 - L1MB5 LINE L1 0 6174 5589 250 290 0 0 chr3 128719169 128719231 -98805347 + HERV16 LTR ERVL 4938 4999 -765 3493 157 16 39 chr3 128719453 128720020 -98804558 + MLT2B3 LTR ERVL 1 554 0 293 302 38 28 chr3 128720051 128720157 -98804421 + HERV16 LTR ERVL 4787 4893 -103 605 258 42 25 chr3 128720334 128720592 -98803986 + LTR16A LTR ERVL 122 423 -27 786 317 168 28 chr3 128720600 128720732 -98803846 + L3 LINE CR1 964 1076 -501 2327 93 0 0 chr3 128720732 128721023 -98803555 - AluY SINE Alu -20 291 1 786 317 168 28 chr3 128721023 128721427 -98803151 + L3 LINE CR1 1076 1575 -2 391 261 75 8 chr3 128721984 128722118 -98802460 + MLT1C LTR MaLR 3 145 -322 608 122 0 11 chr3 128722123 128722213 -98802365 + MLT1C LTR MaLR 377 465 -2 1890 157 10 102 chr3 128722733 128723135 -98801443 + MLT1A1 LTR MaLR 1 365 0 1008 105 0 0 chr3 128723195 128723328 -98801250 + AluSq/x SINE Alu 1 133 -179 314 274 106 26 chr3 128723361 128723474 -98801104 - MIR SINE MIR -67 141 20 465 224 17 52 chr3 128724671 128724697 -98799881 + L2 LINE L2 3200 3225 -88 2196 115 0 0 chr3 128724697 128724993 -98799585 - AluSq SINE Alu -17 296 1 465 224 17 52 chr3 128724993 128725082 -98799496 + L2 LINE L2 3225 3311 -2 381 268 177 24 chr3 128725634 128725798 -98798780 + MIR3 SINE MIR 9 197 -11 567 251 76 35 chr3 128726002 128726173 -98798405 + MIR SINE MIR 12 189 -73 1787 172 7 3 chr3 128726251 128726553 -98798025 - AluJo SINE Alu -9 303 1 2329 103 0 3 chr3 128726835 128727135 -98797443 + AluSq SINE Alu 1 299 -14 2194 110 0 7 chr3 128727294 128727602 -98796976 + AluSx SINE Alu 1 306 -6 295 296 68 0 chr3 128728006 128728094 -98796484 + L2 LINE L2 3193 3286 -27 7362 141 33 14 chr3 128728122 128729324 -98795254 - Tigger3b DNA MER2_type 0 1231 7 215 274 40 89 chr3 128730476 128730545 -98794033 - MIR SINE MIR -24 238 175 2036 128 0 0 chr3 128730545 128730855 -98793723 + AluSx SINE Alu 1 310 0 215 274 40 89 chr3 128730855 128730908 -98793670 - MIR SINE MIR -87 175 121 239 306 16 66 chr3 128731003 128731124 -98793454 - L2 LINE L2 -8 3264 3150 1702 115 0 0 chr3 128731260 128731478 -98793100 + AluSp SINE Alu 1 218 -95 1754 134 3 39 chr3 128731480 128731764 -98792814 + AluJo SINE Alu 30 303 -9 3313 233 94 26 chr3 128732127 128732584 -98791994 - L2 LINE L2 -1 3312 2888 1189 164 53 0 chr3 128732584 128732791 -98791787 + MER20 DNA MER1_type 1 218 -1 3313 233 94 26 chr3 128732791 128733542 -98791036 - L2 LINE L2 -425 2888 2014 362 208 104 28 chr3 128734284 128734390 -98790188 + MER103 DNA DNA 1 114 -52 221 309 22 36 chr3 128734434 128734573 -98790005 + L2 LINE L2 2538 2674 -640 1205 129 0 0 chr3 128734585 128734755 -98789823 - AluSg/x SINE Alu -9 303 134 455 257 185 9 chr3 128734779 128735001 -98789577 + L2 LINE L2 2717 2977 -337 402 249 138 74 chr3 128734995 128735212 -98789366 + L2 LINE L2 3082 3312 -1 * 559 230 16 8 chr3 128735256 128735382 -98789196 + L2 LINE L2 2014 2140 -1174 21 0 0 0 chr3 128736127 128736148 -98788430 + AT_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr3 128736261 128736298 -98788280 + AT_rich Low_complexity Low_complexity 1 37 0 1649 184 10 10 chr3 128736597 128736891 -98787687 + AluJo SINE Alu 1 294 -18 2243 109 3 0 chr3 128736911 128737205 -98787373 + AluSx SINE Alu 1 295 -17 1641 257 109 38 chr3 128737223 128738112 -98786466 + L2 LINE L2 2351 3313 0 223 351 90 0 chr3 128739103 128739214 -98785364 - L2 LINE L2 0 3313 3193 234 362 115 28 chr3 128740171 128740641 -98783937 + L2 LINE L2 637 1147 -2167 916 139 0 0 chr3 128740663 128740792 -98783786 + FLAM_C SINE Alu 1 129 -14 249 259 146 38 chr3 128741039 128741251 -98783327 - L2 LINE L2 -1221 2093 1859 543 313 111 18 chr3 128741752 128741969 -98782609 + L2 LINE L2 3036 3272 0 459 290 215 42 chr3 128742233 128742568 -98782010 - L3 LINE CR1 -14 1563 1171 306 247 37 12 chr3 128743073 128743154 -98781424 - MER5B DNA MER1_type -60 118 36 2364 69 0 23 chr3 128743568 128743893 -98780685 + AluY SINE Alu 1 311 0 349 243 13 0 chr3 128744135 128744223 -98780355 + MER93a LTR ERV1 253 370 -32 239 0 32 0 chr3 128744223 128744254 -98780324 + (TAA)n Simple_repeat Simple_repeat 2 33 0 209 182 0 0 chr3 128745233 128745266 -98779312 + polypurine Low_complexity Low_complexity 4 36 0 430 307 70 2 chr3 128746499 128746690 -98777888 + MIR SINE MIR 2 211 -51 610 261 152 5 chr3 128747195 128747406 -98777172 + MIR SINE MIR 21 262 0 383 338 95 5 chr3 128747438 128747660 -98776918 - L1MEc LINE L1 -4137 2259 2018 2038 127 7 0 chr3 128747756 128748048 -98776530 - AluSx SINE Alu -18 294 1 206 237 0 34 chr3 128749319 128749378 -98775200 + GA-rich Low_complexity Low_complexity 4 60 0 425 241 0 0 chr3 128749609 128749688 -98774890 - Tigger7 DNA MER2_type -6 2481 2403 687 83 7 56 chr3 128749688 128749832 -98774746 + (TAGA)n Simple_repeat Simple_repeat 3 139 0 413 119 0 0 chr3 128749832 128749899 -98774679 - Tigger7 DNA MER2_type -88 2399 2333 * 2529 180 29 0 chr3 128749893 128750342 -98774236 - Tigger7 DNA MER2_type -2021 466 5 1991 160 0 3 chr3 128750782 128751095 -98773483 - AluJb SINE Alu 0 312 1 21 0 0 0 chr3 128751228 128751249 -98773329 + AT_rich Low_complexity Low_complexity 1 21 0 1936 151 16 26 chr3 128751305 128751616 -98772962 + AluJb SINE Alu 5 312 0 2192 138 0 0 chr3 128753150 128753461 -98771117 + AluSx SINE Alu 1 311 -1 201 308 158 25 chr3 128755596 128755716 -98768862 - L2 LINE L2 0 3272 3137 230 179 126 84 chr3 128755879 128755974 -98768604 - L2 LINE L2 -220 3052 2954 1969 148 0 20 chr3 128757983 128758286 -98766292 + AluSx SINE Alu 1 297 -15 4169 110 2 0 chr3 128758459 128759022 -98765556 - L1PA14 LINE L1 -2 6159 5596 709 150 43 7 chr3 128759358 128759498 -98765080 + L1MA4A LINE L1 6159 6303 0 24 0 0 0 chr3 128759775 128759799 -98764779 + AT_rich Low_complexity Low_complexity 1 24 0 447 358 111 49 chr3 128760071 128760525 -98764053 + L2 LINE L2 1979 2404 -910 2007 124 28 0 chr3 128760525 128760816 -98763762 - AluSx SINE Alu -13 299 1 447 358 111 49 chr3 128760816 128761235 -98763343 + L2 LINE L2 2404 2906 -408 1775 121 15 29 chr3 128761364 128761637 -98762941 - AluSx SINE Alu -10 302 34 268 333 10 0 chr3 128761845 128761944 -98762634 + L2 LINE L2 2068 2167 -1147 225 178 0 44 chr3 128761977 128762022 -98762556 + L2 LINE L2 3227 3269 -3 2043 142 0 6 chr3 128762585 128762896 -98761682 - AluSg SINE Alu -1 309 1 275 206 192 0 chr3 128762944 128763017 -98761561 - MER94 DNA DNA -41 93 7 201 333 7 35 chr3 128763089 128763230 -98761348 + L2 LINE L2 2031 2167 -1147 538 385 60 15 chr3 128763397 128763851 -98760727 + L2 LINE L2 2265 2738 -576 256 303 48 31 chr3 128764140 128764411 -98760167 - L1MC/D LINE L1 -659 5511 5256 314 281 82 46 chr3 128764434 128764484 -98760094 - L1MC/D LINE L1 -941 5205 5158 2036 138 17 0 chr3 128764484 128764782 -98759796 - AluSx SINE Alu -8 304 2 314 281 82 46 chr3 128764782 128765012 -98759566 - L1MC/D LINE L1 -988 5158 4915 1798 168 0 16 chr3 128765139 128765448 -98759130 - AluJb SINE Alu -5 307 4 308 252 7 91 chr3 128766574 128766691 -98757887 + MER46C DNA MER2_type 146 250 -88 2337 74 3 0 chr3 128766691 128766976 -98757602 - AluSp SINE Alu -11 302 17 308 252 7 91 chr3 128766976 128767001 -98757577 + MER46C DNA MER2_type 250 276 -62 330 219 129 0 chr3 128767012 128767120 -98757458 - L1ME3 LINE L1 -34 6136 6017 1638 136 0 0 chr3 128767600 128767836 -98756742 - MER46A DNA MER2_type 0 236 1 576 257 29 61 chr3 128768192 128768239 -98756339 - MIR SINE MIR -6 256 209 2333 92 14 0 chr3 128768239 128768534 -98756044 + AluSq SINE Alu 1 299 -14 576 257 29 61 chr3 128768534 128768731 -98755847 - MIR SINE MIR -53 209 20 585 151 0 0 chr3 128770337 128770423 -98754155 - AluJo SINE Alu -20 292 207 1395 154 0 0 chr3 128770509 128770717 -98753861 - AluJo SINE Alu -104 208 1 447 19 0 0 chr3 128771184 128771236 -98753342 + (CA)n Simple_repeat Simple_repeat 1 52 0 545 220 0 0 chr3 128771261 128771361 -98753217 - AluJ/FLAM SINE Alu -211 101 2 310 289 70 14 chr3 128771433 128771575 -98753003 - L1ME LINE L1 -364 5757 5608 1244 155 59 5 chr3 128772192 128772248 -98752330 - MER46A DNA MER2_type -2499 232 181 633 61 0 0 chr3 128772248 128772330 -98752248 + (TTG)n Simple_repeat Simple_repeat 3 84 0 1244 155 59 5 chr3 128772330 128772492 -98752086 - MER46A DNA MER2_type -2550 181 2 1853 102 0 0 chr3 128773033 128773277 -98751301 - AluSg/x SINE Alu -3 309 66 1470 125 136 42 chr3 128773315 128773579 -98750999 + AluJo SINE Alu 1 289 -23 696 254 67 38 chr3 128773582 128773822 -98750756 - MIR SINE MIR -10 252 6 259 289 29 19 chr3 128773812 128773916 -98750662 + MIR SINE MIR 118 222 -40 * 2453 81 0 0 chr3 128774188 128774485 -98750093 - AluSg SINE Alu -13 297 1 199 210 47 88 chr3 128775751 128775868 -98748710 + MIR SINE MIR 84 191 -17 2144 130 138 49 chr3 128776294 128776350 -98748228 - MSTB LTR MaLR 0 426 376 1975 71 0 16 chr3 128776350 128776602 -98747976 - AluY SINE Alu -8 303 56 2144 130 138 49 chr3 128776602 128776936 -98747642 - MSTB LTR MaLR -50 376 1 22 35 0 0 chr3 128777304 128777333 -98747245 + AT_rich Low_complexity Low_complexity 1 29 0 2365 142 98 3 chr3 128777533 128777920 -98746658 - MSTB LTR MaLR -2 424 1 889 224 147 9 chr3 128779318 128779550 -98745028 - Charlie8 DNA MER1_type -2152 265 2 2038 124 10 10 chr3 128779833 128780131 -98744447 + AluSx SINE Alu 3 300 -12 1859 157 21 48 chr3 128780304 128780632 -98743946 - MLT1A1 LTR MaLR 0 365 47 2291 95 0 7 chr3 128780632 128780927 -98743651 - AluSg SINE Alu -17 293 1 1859 157 21 48 chr3 128780927 128780973 -98743605 - MLT1A1 LTR MaLR -318 47 1 207 0 0 0 chr3 128783400 128783423 -98741155 + (TTTTTA)n Simple_repeat Simple_repeat 2 24 0 1476 173 54 11 chr3 128783525 128783802 -98740776 + AluJo SINE Alu 5 293 -19 2592 49 0 13 chr3 128783962 128784269 -98740309 + AluY SINE Alu 1 303 -8 552 269 42 6 chr3 128784613 128784780 -98739798 - MIR3 SINE MIR -18 190 18 6897 69 16 1 chr3 128785324 128786280 -98738298 + L1PA8 LINE L1 5201 6169 -3 1381 220 97 62 chr3 128786384 128786689 -98737889 + L1MC5 LINE L1 7368 7702 -259 2322 88 7 0 chr3 128786689 128786985 -98737593 - AluSp SINE Alu -15 298 1 1381 220 97 62 chr3 128786985 128787224 -98737354 + L1MC5 LINE L1 7702 7931 -30 230 256 119 14 chr3 128787225 128787330 -98737248 + MIR SINE MIR 42 155 -86 384 236 41 57 chr3 128787519 128787642 -98736936 + LTR67 LTR ERVL 96 216 -341 250 280 8 68 chr3 128787705 128787823 -98736755 + LTR67 LTR ERVL 407 517 -40 899 150 0 0 chr3 128787968 128788095 -98736483 - FLAM_C SINE Alu -16 127 1 2093 141 3 3 chr3 128788112 128788418 -98736160 - AluSx SINE Alu -6 306 1 2314 148 30 28 chr3 128788502 128788884 -98735694 - L1MA4 LINE L1 -11 6289 5904 2942 13 0 0 chr3 128788884 128789200 -98735378 - AluYb8 SINE Alu -2 316 1 2314 148 30 28 chr3 128789200 128789251 -98735327 - L1MA4 LINE L1 -396 5904 5855 2103 131 0 10 chr3 128789378 128789690 -98734888 - AluSg SINE Alu -1 309 1 680 133 0 0 chr3 128789833 128789938 -98734640 + FRAM SINE Alu 67 171 -5 212 333 11 22 chr3 128789958 128790048 -98734530 - MIR3 SINE MIR -48 160 72 1886 136 19 42 chr3 128791270 128791409 -98733169 + AluSx SINE Alu 1 142 -170 2664 32 0 23 chr3 128791409 128791719 -98732859 + AluY SINE Alu 1 303 -8 1886 136 19 42 chr3 128791719 128791889 -98732689 + AluSx SINE Alu 142 303 -9 2738 81 28 8 chr3 128791988 128792345 -98732233 - THE1B LTR MaLR 0 364 1 413 293 6 32 chr3 128794204 128794361 -98730217 - MIR SINE MIR -27 235 83 248 276 46 81 chr3 128794643 128794714 -98729864 + MIR SINE MIR 35 107 -155 183 100 0 0 chr3 128794714 128794744 -98729834 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 2239 93 0 7 chr3 128794744 128795033 -98729545 - AluSp SINE Alu -26 287 1 248 276 46 81 chr3 128795033 128795134 -98729444 + MIR SINE MIR 105 202 -60 31 0 0 0 chr3 128795144 128795175 -98729403 + AT_rich Low_complexity Low_complexity 1 31 0 2437 84 7 0 chr3 128795469 128795777 -98728801 + AluSg SINE Alu 1 310 0 309 217 48 24 chr3 128796063 128796146 -98728432 + LTR33 LTR ERVL 1 85 -436 238 250 17 0 chr3 128797075 128797135 -98727443 - L2 LINE L2 0 3313 3253 25 0 0 0 chr3 128799571 128799596 -98724982 + AT_rich Low_complexity Low_complexity 1 25 0 325 240 64 56 chr3 128799664 128799789 -98724789 - MIR SINE MIR -113 149 24 2035 113 65 0 chr3 128800136 128800427 -98724151 + AluSx SINE Alu 1 310 -2 21 36 0 0 chr3 128800594 128800622 -98723956 + AT_rich Low_complexity Low_complexity 1 28 0 1473 151 20 67 chr3 128801338 128801637 -98722941 - AluJo SINE Alu -25 287 3 181 226 65 0 chr3 128802249 128802311 -98722267 + L2 LINE L2 2316 2381 -933 2144 121 3 3 chr3 128802415 128802713 -98721865 - AluSx SINE Alu -14 298 1 393 274 192 33 chr3 128802723 128803030 -98721548 - L2 LINE L2 0 3313 2958 1973 200 175 40 chr3 128803196 128803772 -98720806 + MLT1E1 LTR MaLR 1 654 0 856 209 24 24 chr3 128805084 128805294 -98719284 + MER63A DNA MER1_type 1 210 0 186 296 23 34 chr3 128805379 128805467 -98719111 - MIR SINE MIR -57 151 65 339 354 0 0 chr3 128805655 128805754 -98718824 - MER5A DNA MER1_type -30 159 61 878 150 28 74 chr3 128805756 128806066 -98718512 - L1PB1 LINE L1 0 6166 5896 536 306 38 0 chr3 128806766 128806949 -98717629 + MIR SINE MIR 2 191 -71 200 258 16 16 chr3 128807142 128807204 -98717374 - L2 LINE L2 -1 3271 3210 * 960 214 15 0 chr3 128807170 128807376 -98717202 - MIR SINE MIR -23 239 31 485 296 98 5 chr3 128807443 128807646 -98716932 + MIR SINE MIR 41 262 0 303 28 0 0 chr3 128808026 128808062 -98716516 + (TG)n Simple_repeat Simple_repeat 1 36 0 292 242 121 85 chr3 128809231 128809396 -98715182 - MER91A DNA MER1_type -8 188 18 211 288 0 45 chr3 128809590 128809656 -98714922 + C-rich Low_complexity Low_complexity 4 66 0 482 277 147 5 chr3 128809699 128809923 -98714655 - MIR SINE MIR 0 262 7 1150 56 17 17 chr3 128810416 128810594 -98713984 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 2110 142 0 0 chr3 128810594 128811054 -98713524 - AluSx SINE Alu 0 460 1 362 226 144 120 chr3 128811447 128811521 -98713057 + Tigger8 DNA MER2_type 452 523 -143 2341 112 3 0 chr3 128811521 128811825 -98712753 + AluSp SINE Alu 1 305 -8 810 187 0 15 chr3 128811832 128811966 -98712612 + FLAM_A SINE Alu 2 133 0 477 196 28 9 chr3 128811974 128812081 -98712497 + L1MB7 LINE L1 6076 6184 0 362 226 144 120 chr3 128812081 128812197 -98712381 + Tigger8 DNA MER2_type 534 664 -2 272 222 192 0 chr3 128812386 128812485 -98712093 + MIR SINE MIR 145 262 0 250 281 16 0 chr3 128812701 128812765 -98711813 + GA-rich Low_complexity Low_complexity 6 70 0 180 217 0 0 chr3 128813020 128813066 -98711512 + CT-rich Low_complexity Low_complexity 2 47 0 211 273 0 0 chr3 128813765 128813818 -98710760 - MIR3 SINE MIR -3 205 153 291 261 228 0 chr3 128813818 128813910 -98710668 + MER5A DNA MER1_type 1 113 -76 1286 109 0 16 chr3 128813931 128814114 -98710464 - AluSp SINE Alu 0 313 134 588 241 77 34 chr3 128816227 128816434 -98708144 - MIR SINE MIR 0 262 47 266 321 71 0 chr3 128817072 128817156 -98707422 - MIR SINE MIR -79 183 94 292 284 40 0 chr3 128817156 128817230 -98707348 - MIR SINE MIR -136 126 50 2242 111 20 0 chr3 128817645 128817951 -98706627 + AluSx SINE Alu 1 312 0 400 231 11 0 chr3 128818244 128818335 -98706243 - Charlie4 DNA MER1_type -1679 282 191 1026 81 0 22 chr3 128818381 128818517 -98706061 + AluSg/x SINE Alu 174 306 -6 460 232 99 0 chr3 128818524 128818675 -98705903 - Charlie4 DNA MER1_type -1764 197 32 212 239 22 0 chr3 128818847 128818893 -98705685 + MIR SINE MIR 105 151 -57 2317 94 17 0 chr3 128819046 128819344 -98705234 - AluSq SINE Alu -10 303 1 1696 162 106 8 chr3 128819382 128819740 -98704838 + MSTD LTR MaLR 4 396 0 190 288 50 25 chr3 128819761 128819841 -98704737 - MER5A DNA MER1_type 0 189 108 225 152 43 22 chr3 128819908 128819954 -98704624 + MIR3 SINE MIR 157 203 -5 323 300 101 34 chr3 128821503 128821615 -98702963 + MLT1L LTR MaLR 110 213 -402 207 0 0 0 chr3 128821615 128821638 -98702940 + (TC)n Simple_repeat Simple_repeat 1 23 0 323 300 101 34 chr3 128821638 128821899 -98702679 + MLT1L LTR MaLR 213 609 -6 251 114 0 0 chr3 128822621 128822656 -98701922 + U2 snRNA snRNA 1 35 -153 226 325 80 53 chr3 128823459 128823610 -98700968 - L2 LINE L2 -2 3270 3116 224 255 0 0 chr3 128823709 128823760 -98700818 + T-rich Low_complexity Low_complexity 1 51 0 1077 313 43 26 chr3 128825247 128825739 -98698839 - L2 LINE L2 0 3313 2814 458 245 14 61 chr3 128825752 128825899 -98698679 + MIR SINE MIR 24 163 -99 562 99 10 30 chr3 128825899 128826000 -98698578 - MSTC LTR MaLR 0 428 330 380 302 79 82 chr3 128826027 128826103 -98698475 + MER115 DNA AcHobo 9 84 -609 2334 142 6 8 chr3 128826103 128826469 -98698109 + MLT1A1 LTR MaLR 1 365 0 380 302 79 82 chr3 128826469 128826697 -98697881 + MER115 DNA AcHobo 84 312 -381 759 275 42 56 chr3 128826731 128827018 -98697560 + MER115 DNA AcHobo 411 693 0 23 68 0 0 chr3 128827243 128827287 -98697291 + AT_rich Low_complexity Low_complexity 1 44 0 373 177 38 25 chr3 128828080 128828159 -98696419 + MIR SINE MIR 123 202 -60 946 184 5 34 chr3 128828163 128828370 -98696208 - MER20 DNA MER1_type -15 204 4 190 120 0 0 chr3 128828375 128828400 -98696178 + L2 LINE L2 3215 3239 -33 1932 155 0 23 chr3 128829463 128829766 -98694812 + AluJo SINE Alu 1 296 -16 707 226 45 40 chr3 128829999 128830198 -98694380 - MIR SINE MIR -56 206 7 643 259 110 21 chr3 128833012 128833248 -98691330 - MIR SINE MIR -1 261 5 204 135 0 0 chr3 128833304 128833341 -98691237 + (TAA)n Simple_repeat Simple_repeat 2 38 0 1738 182 62 19 chr3 128833440 128833814 -98690764 + MLT1B LTR MaLR 1 390 0 763 131 0 0 chr3 128835748 128835870 -98688708 - AluSx SINE Alu -1 308 187 2344 166 21 0 chr3 128835870 128836293 -98688285 - L1MB3 LINE L1 -248 6171 5740 4085 167 38 38 chr3 128836307 128837815 -98686763 - L1MB3 LINE L1 -3231 3151 1649 1223 194 0 5 chr3 128837815 128838011 -98686567 - AluSx SINE Alu -117 195 1 3453 166 55 21 chr3 128838011 128838828 -98685750 - L1MB3 LINE L1 -4730 1654 810 1184 161 28 32 chr3 128838828 128839046 -98685532 - AluJo SINE Alu -15 297 81 3843 174 46 16 chr3 128839046 128839374 -98685204 - L1MB3 LINE L1 -5569 815 499 1525 99 5 10 chr3 128839374 128839576 -98685002 - AluSp SINE Alu -112 201 1 3843 174 46 16 chr3 128839576 128840023 -98684555 - L1MB3 LINE L1 -5885 499 16 2219 129 7 0 chr3 128841351 128841661 -98682917 - AluSx SINE Alu 0 312 1 464 275 130 10 chr3 128841709 128841909 -98682669 - MLT1L LTR MaLR -224 391 168 518 316 51 10 chr3 128842459 128842655 -98681923 + MIR3 SINE MIR 2 205 -3 247 208 8 154 chr3 128842807 128842937 -98681641 + MER102a DNA MER1_type 220 330 0 450 0 0 0 chr3 128843561 128843611 -98680967 + (TA)n Simple_repeat Simple_repeat 2 51 0 2419 153 34 7 chr3 128843778 128844195 -98680383 + MSTA LTR MaLR 1 428 0 9256 161 30 14 chr3 128844195 128845821 -98678757 + MSTA-int LTR MaLR 1 1651 0 1983 144 60 14 chr3 128845821 128846188 -98678390 + MSTA LTR MaLR 1 384 -44 1753 167 14 11 chr3 128846189 128846464 -98678114 + AluSx SINE Alu 1 276 -36 405 0 0 0 chr3 128846469 128846514 -98678064 + (GAAA)n Simple_repeat Simple_repeat 1 45 0 1814 230 76 39 chr3 128847348 128847749 -98676829 + MLT1H1 LTR MaLR 12 438 -117 2215 132 34 23 chr3 128847749 128848135 -98676443 + MLT1B LTR MaLR 1 390 0 1814 230 76 39 chr3 128848135 128848246 -98676332 + MLT1H1 LTR MaLR 438 543 -12 649 276 175 5 chr3 128848900 128849117 -98675461 + MIR SINE MIR 2 255 -7 642 280 70 0 chr3 128849658 128849844 -98674734 - MER63A DNA MER1_type -7 203 5 2153 108 11 0 chr3 128849922 128850224 -98674354 - AluSq SINE Alu 0 305 1 254 258 33 20 chr3 128850354 128850505 -98674073 + Charlie7 DNA MER1_type 2460 2612 0 216 0 0 0 chr3 128850578 128850602 -98673976 + (GA)n Simple_repeat Simple_repeat 1 24 0 24 0 0 0 chr3 128850674 128850698 -98673880 + AT_rich Low_complexity Low_complexity 1 24 0 495 207 0 52 chr3 128850824 128850940 -98673638 - MER5A DNA MER1_type -29 160 51 588 237 33 0 chr3 128850948 128851100 -98673478 - MER5C DNA MER1_type -167 157 1 320 183 33 0 chr3 128851248 128851308 -98673270 - MER5A DNA MER1_type -127 62 1 436 331 75 32 chr3 128851309 128851590 -98672988 - L2 LINE L2 -2985 329 37 405 0 0 0 chr3 128852577 128852622 -98671956 + (TA)n Simple_repeat Simple_repeat 1 45 0 333 0 0 0 chr3 128852628 128852665 -98671913 + (T)n Simple_repeat Simple_repeat 1 37 0 189 192 96 82 chr3 128852838 128852911 -98671667 - L2 LINE L2 -4 3309 3236 771 308 190 6 chr3 128853235 128853958 -98670620 - L2 LINE L2 -1 3312 2464 2981 159 27 14 chr3 128854065 128854617 -98669961 - MER89 LTR ERV1 0 559 1 592 263 142 21 chr3 128854917 128855163 -98669415 + MER5C DNA MER1_type 10 296 -28 2391 50 0 0 chr3 128855163 128855483 -98669095 + AluY SINE Alu 1 320 0 592 263 142 21 chr3 128855483 128855516 -98669062 + MER5C DNA MER1_type 296 324 0 24 53 0 0 chr3 128855950 128855988 -98668590 + AT_rich Low_complexity Low_complexity 1 38 0 2097 135 3 0 chr3 128856443 128856739 -98667839 - AluSx SINE Alu -7 305 9 22 0 0 0 chr3 128857906 128857928 -98666650 + AT_rich Low_complexity Low_complexity 1 22 0 408 304 50 80 chr3 128857939 128858238 -98666340 + L3 LINE CR1 819 1108 -469 295 185 111 0 chr3 128858291 128858372 -98666206 - L1ME1 LINE L1 -289 5877 5788 396 180 0 45 chr3 128858379 128858468 -98666110 - L1ME1 LINE L1 -433 5733 5649 1055 163 0 0 chr3 128858477 128858643 -98665935 - FRAM SINE Alu -9 167 2 1402 225 36 13 chr3 128858655 128859126 -98665452 - L1ME1 LINE L1 -506 5660 5172 920 27 0 0 chr3 128859149 128859259 -98665319 - L1PA2 LINE L1 0 6155 6046 1516 188 35 60 chr3 128859267 128859586 -98664992 - AluJo SINE Alu -1 311 1 362 273 8 8 chr3 128859690 128859822 -98664756 - L1M4 LINE L1 -843 5303 5172 696 85 0 9 chr3 128859849 128859955 -98664623 - L1PA2 LINE L1 -4 6151 6047 1506 184 36 62 chr3 128859974 128860283 -98664295 - AluJo SINE Alu -11 301 1 2368 234 37 10 chr3 128860284 128861086 -98663492 - L1M4 LINE L1 -960 5186 4363 771 150 0 0 chr3 128861090 128861210 -98663368 - AluJo/FRAM SINE Alu -10 302 183 564 159 0 0 chr3 128861211 128861299 -98663279 - AluJ/FLAM SINE Alu -224 88 1 580 180 68 44 chr3 128861306 128861512 -98663066 - L1M4 LINE L1 -1777 4369 4159 1585 205 3 26 chr3 128861604 128861906 -98662672 - AluJo SINE Alu -16 296 2 485 280 98 21 chr3 128861948 128862054 -98662524 - L1MEc LINE L1 -5238 1158 1062 2452 160 21 0 chr3 128862054 128862442 -98662136 - MSTD LTR MaLR 0 396 1 485 280 98 21 chr3 128862442 128862621 -98661957 - L1MEc LINE L1 -5334 1062 851 309 317 45 76 chr3 128862646 128862936 -98661642 + HAL1 LINE L1 1799 2079 -428 2423 96 0 3 chr3 128863201 128863515 -98661063 - AluSp SINE Alu 0 313 1 262 291 12 12 chr3 128863516 128863688 -98660890 + HAL1b LINE L1 949 1120 -228 479 303 47 26 chr3 128864343 128864723 -98659855 - L1ME LINE L1 -4238 2023 1636 3220 134 12 2 chr3 128864740 128865551 -98659027 + L1PA15 LINE L1 5283 6165 0 2601 253 67 39 chr3 128865587 128867007 -98657571 - L1ME LINE L1 -4648 1613 5 291 254 57 57 chr3 128867446 128867568 -98657010 + L3 LINE CR1 1358 1479 -98 568 314 52 13 chr3 128868653 128868882 -98655696 - MIR SINE MIR -1 261 24 1588 172 24 3 chr3 128869332 128869628 -98654950 - L1MB4 LINE L1 -6 6174 5873 1061 166 50 0 chr3 128869628 128869827 -98654751 - MSTD LTR MaLR -187 209 1 2438 163 13 20 chr3 128869829 128870308 -98654270 - L1MB4 LINE L1 -438 5727 5255 344 278 82 0 chr3 128870311 128870408 -98654170 - MIR SINE MIR -109 153 49 1969 265 35 38 chr3 128870423 128871001 -98653577 + MLT1E LTR MaLR 14 589 -4 230 244 46 43 chr3 128872128 128872277 -98652301 - L3 LINE CR1 -126 1451 1240 2029 149 0 0 chr3 128872302 128872598 -98651980 + AluSq SINE Alu 1 296 -17 423 73 0 0 chr3 128873085 128873140 -98651438 - L1P LINE L1 -1511 4635 4581 4913 66 2 3 chr3 128873140 128873724 -98650854 + L1PA7 LINE L1 5564 6154 0 245 347 84 30 chr3 128873997 128874164 -98650414 - MIR SINE MIR -74 188 13 761 219 20 76 chr3 128874283 128874541 -98650037 - L1ME2 LINE L1 0 6164 5927 210 292 42 0 chr3 128878134 128878206 -98646372 + MIR SINE MIR 183 257 -5 182 250 171 0 chr3 128878346 128878422 -98646156 - L3 LINE CR1 -193 1384 1296 391 273 101 0 chr3 128878599 128878698 -98645880 - L2 LINE L2 -19 3294 3186 273 202 155 0 chr3 128878933 128879017 -98645561 - MIR SINE MIR -75 187 91 357 283 51 51 chr3 128879548 128879725 -98644853 + L1MEd LINE L1 2 178 -5941 767 371 56 11 chr3 128879738 128880275 -98644303 + L1MEd LINE L1 268 828 -5291 697 301 68 16 chr3 128880323 128880831 -98643747 + L1MEd LINE L1 981 1558 -932 190 67 44 44 chr3 128881432 128881477 -98643101 + T-rich Low_complexity Low_complexity 2 46 0 21 36 0 0 chr3 128881506 128881534 -98643044 + AT_rich Low_complexity Low_complexity 1 28 0 31 0 0 0 chr3 128882215 128882246 -98642332 + AT_rich Low_complexity Low_complexity 1 31 0 2122 98 22 0 chr3 128885350 128885658 -98638920 + AluY SINE Alu 1 314 0 509 315 101 7 chr3 128885995 128886281 -98638297 - L1MC4a LINE L1 -1911 5897 5585 7596 108 106 115 chr3 128888308 128890019 -98634559 - pTR5 LTR ERV1 0 2438 743 234 280 56 19 chr3 128890711 128890818 -98633760 + L1ME LINE L1 5488 5598 -564 344 286 20 0 chr3 128891292 128891390 -98633188 + HAL1 LINE L1 640 739 -1768 233 161 143 18 chr3 128891428 128891484 -98633094 - L1P LINE L1 -1984 4162 4100 182 148 0 0 chr3 128891899 128891926 -98632652 + MER5A DNA MER1_type 1 27 -162 2170 123 0 0 chr3 128891957 128892250 -98632328 + AluSg SINE Alu 1 293 -17 649 171 73 0 chr3 128893160 128893283 -98631295 + MLT1B LTR MaLR 6 137 -253 1214 249 3 26 chr3 128893325 128893658 -98630920 - AluSx SINE Alu 0 326 1 183 80 0 0 chr3 128894421 128894446 -98630132 + (TA)n Simple_repeat Simple_repeat 1 25 0 305 224 129 0 chr3 128894630 128894715 -98629863 + MIR3 SINE MIR 73 168 -40 3870 83 13 19 chr3 128896271 128896811 -98627767 - L1MA3 LINE L1 0 6305 5769 1357 192 8 8 chr3 128896813 128897068 -98627510 - AluJo SINE Alu -13 299 45 1370 136 13 38 chr3 128897068 128897304 -98627274 - L1M1 LINE L1 -524 5781 5552 6915 110 9 46 chr3 128897310 128898606 -98625972 - L1MA3 LINE L1 0 7724 6460 4077 139 26 28 chr3 128898678 128898891 -98625687 - L1MA3 LINE L1 -1089 6476 6264 5284 65 2 6 chr3 128898891 128899522 -98625056 + L1PA5 LINE L1 5527 6154 0 4077 139 26 28 chr3 128899522 128900047 -98624531 - L1MA3 LINE L1 -1301 6264 5740 834 130 16 0 chr3 128900047 128900170 -98624408 - AluSg/x SINE Alu -6 304 180 276 86 0 0 chr3 128900171 128900206 -98624372 - MER41B LTR ERV1 -600 35 1 12063 97 36 48 chr3 128900206 128902502 -98622076 - MER41B-int LTR ERV1 -2 5944 2864 2025 124 48 44 chr3 128902499 128903076 -98621502 - MER41A-int LTR ERV1 -4058 3758 3185 * 189 107 0 0 chr3 128903076 128903104 -98621474 + (CA)n Simple_repeat Simple_repeat 1 28 0 2025 124 48 44 chr3 128903104 128903116 -98621462 - MER41A-int LTR ERV1 -4631 3185 1080 3954 142 55 0 chr3 128903116 128903715 -98620863 - MER41A-int LTR ERV1 -5314 632 1 957 103 62 0 chr3 128903715 128903835 -98620743 - MER41A LTR ERV1 0 554 422 1972 150 3 3 chr3 128903835 128904135 -98620443 + AluSx SINE Alu 1 300 -12 957 103 62 0 chr3 128904135 128904160 -98620418 - MER41A LTR ERV1 -132 422 400 3860 156 45 81 chr3 128904160 128904725 -98619853 - L1MA3 LINE L1 -3007 4558 3974 2071 102 0 84 chr3 128904725 128905058 -98619520 - AluSq SINE Alu -8 305 1 3860 156 45 81 chr3 128905058 128905422 -98619156 - L1MA3 LINE L1 -3591 3974 3641 2297 102 0 3 chr3 128905422 128905725 -98618853 - AluY SINE Alu -9 302 1 3860 156 45 81 chr3 128905725 128906025 -98618553 - L1MA3 LINE L1 -3924 3641 3332 * 18420 151 30 19 chr3 128906021 128908805 -98615773 - L1PB1 LINE L1 0 6867 4117 2323 90 3 16 chr3 128908805 128909116 -98615462 - AluY SINE Alu -4 307 1 18420 151 30 19 chr3 128909116 128911011 -98613567 - L1PB1 LINE L1 -2750 4117 2245 207 100 0 0 chr3 128911011 128911041 -98613537 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 18420 151 30 19 chr3 128911041 128911821 -98612757 - L1PB1 LINE L1 -4622 2245 1475 2835 16 0 0 chr3 128911821 128912131 -98612447 + AluYa5 SINE Alu 1 310 -1 18420 151 30 19 chr3 128912131 128912694 -98611884 - L1PB1 LINE L1 -5392 1475 920 2397 129 8 14 chr3 128912694 128913051 -98611527 + THE1A LTR MaLR 1 355 0 18420 151 30 19 chr3 128913051 128913809 -98610769 - L1PB1 LINE L1 -5947 920 3 17818 121 111 53 chr3 128913838 128914257 -98610321 - L1M1 LINE L1 -4220 3345 2952 1799 93 4 4 chr3 128914257 128914530 -98610048 + AluY SINE Alu 54 326 0 991 110 110 0 chr3 128914530 128914676 -98609902 - THE1B LTR MaLR -202 162 1 17818 121 111 53 chr3 128914676 128917258 -98607320 - L1M1 LINE L1 -4612 2953 13 288 256 121 77 chr3 128917405 128917513 -98607065 - L1MC5 LINE L1 -145 7897 7795 2221 182 5 18 chr3 128917513 128917908 -98606670 - MLT1B LTR MaLR 0 390 1 288 256 121 77 chr3 128917908 128918081 -98606497 - L1MC5 LINE L1 -247 7795 7501 40924 32 29 1 chr3 128918084 128924099 -98600479 + L1PA3 LINE L1 1 6155 0 25 0 0 0 chr3 128924141 128924166 -98600412 + AT_rich Low_complexity Low_complexity 1 25 0 548 254 83 59 chr3 128924257 128925166 -98599412 - L1MC5 LINE L1 -547 7495 6637 15252 114 16 69 chr3 128925182 128927736 -98596842 - Tigger1 DNA MER2_type 0 2418 1 243 0 0 0 chr3 128928107 128928134 -98596444 + (CA)n Simple_repeat Simple_repeat 2 28 0 1879 221 25 3 chr3 128928134 128928491 -98596087 - MLT1A1 LTR MaLR 0 365 1 2260 268 86 17 chr3 128928496 128929473 -98595105 - L1MC4a LINE L1 -743 5403 5133 534 326 53 38 chr3 128929631 128930048 -98594530 - L1MC4a LINE L1 -1701 4445 4023 1673 122 106 0 chr3 128930176 128930430 -98594148 + AluSp SINE Alu 1 281 -32 189 0 0 0 chr3 128930430 128930451 -98594127 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 252 345 58 20 chr3 128930538 128930831 -98593747 - L1MC4a LINE L1 -2294 3852 3549 2761 120 21 24 chr3 128931068 128931535 -98593043 + MER31A LTR ERV1 1 466 -19 523 264 44 6 chr3 128933304 128933463 -98591115 - MIR SINE MIR -13 249 85 248 365 84 0 chr3 128934296 128934403 -98590175 + L2 LINE L2 3156 3271 -1 702 230 17 17 chr3 128937143 128937321 -98587257 + MER5B DNA MER1_type 1 178 0 934 219 77 24 chr3 128937613 128937860 -98586718 + MIR SINE MIR 1 260 -2 2161 80 4 7 chr3 128938080 128938356 -98586222 - AluSp SINE Alu -6 307 33 297 312 224 19 chr3 128938392 128938597 -98585981 + MIR SINE MIR 15 261 -1 265 276 130 81 chr3 128940197 128940320 -98584258 - L2 LINE L2 -1 3271 3143 624 196 38 85 chr3 128940352 128940587 -98583991 + MER97c DNA MER1_type? 867 1090 0 838 138 62 0 chr3 128941450 128941580 -98582998 + FRAM SINE Alu 25 162 -14 343 294 62 71 chr3 128941639 128941773 -98582805 + MIR3 SINE MIR 8 141 -121 1943 174 57 31 chr3 128941773 128942158 -98582420 - MSTD LTR MaLR 0 396 2 343 294 62 71 chr3 128942158 128942234 -98582344 + MIR3 SINE MIR 141 216 -46 312 268 62 9 chr3 128943065 128943177 -98581401 - LTR33 LTR ERVL 0 521 404 684 323 43 11 chr3 128943257 128943536 -98581042 - LTR33 LTR ERVL -228 293 6 664 309 46 1 chr3 128943658 128943939 -98580639 - HERV16 LTR ERVL -3420 1576 1265 1164 206 4 27 chr3 128944077 128944334 -98580244 - MER58B DNA MER1_type 0 341 91 5902 75 78 13 chr3 128944338 128944687 -98579891 - L1PB1 LINE L1 -1 6150 5825 969 94 0 0 chr3 128944687 128944825 -98579753 + (TA)n Simple_repeat Simple_repeat 1 138 0 264 30 0 0 chr3 128944824 128944857 -98579721 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 5902 75 78 13 chr3 128944825 128945446 -98579132 - L1PB1 LINE L1 -326 5825 5155 417 223 29 19 chr3 128945451 128945554 -98579024 - MER58B DNA MER1_type -229 112 9 468 297 87 27 chr3 128945639 128945824 -98578754 - HERV16 LTR ERVL -3942 1054 859 486 362 9 18 chr3 128945958 128946182 -98578396 - HERV16 LTR ERVL -4344 652 431 256 304 35 0 chr3 128946347 128946462 -98578116 - HERV16 LTR ERVL -4717 279 161 897 209 201 50 chr3 128946555 128946930 -98577648 - LTR16A1 LTR ERVL 0 457 17 2834 192 22 24 chr3 128946930 128946971 -98577607 - MLT2B3 LTR ERVL -3 551 511 909 104 0 0 chr3 128946971 128947106 -98577472 + (TGGA)n Simple_repeat Simple_repeat 4 138 0 2834 192 22 24 chr3 128947106 128947616 -98576962 - MLT2B3 LTR ERVL -43 511 1 897 209 201 50 chr3 128947616 128947637 -98576941 - LTR16A1 LTR ERVL -440 17 1 594 258 96 38 chr3 128947665 128947874 -98576704 + MIR SINE MIR 18 238 -24 683 314 110 58 chr3 128948069 128949026 -98575552 - L2 LINE L2 -560 2754 1748 273 57 0 0 chr3 128949413 128949448 -98575130 + (TG)n Simple_repeat Simple_repeat 2 36 0 189 195 49 0 chr3 128949828 128949869 -98574709 - L2 LINE L2 -93 3220 3178 22 0 0 0 chr3 128950758 128950780 -98573798 + AT_rich Low_complexity Low_complexity 1 22 0 1303 175 70 44 chr3 128951260 128951575 -98573003 + MER33 DNA MER1_type 2 324 0 1224 160 5 19 chr3 128952411 128952617 -98571961 + MER3 DNA MER1_type 1 203 -6 361 270 51 51 chr3 128953057 128953208 -98571370 + MIR SINE MIR 30 184 -65 31 82 0 0 chr3 128953963 128954036 -98570542 + AT_rich Low_complexity Low_complexity 1 73 0 21 0 0 0 chr3 128955980 128956001 -98568577 + AT_rich Low_complexity Low_complexity 1 21 0 214 163 0 41 chr3 128956656 128956705 -98567873 + (TATG)n Simple_repeat Simple_repeat 4 50 0 342 0 0 0 chr3 128956766 128956804 -98567774 + (TG)n Simple_repeat Simple_repeat 2 39 0 187 212 15 15 chr3 128957662 128957728 -98566850 + (TA)n Simple_repeat Simple_repeat 1 66 0 21 36 0 0 chr3 128960346 128960374 -98564204 + AT_rich Low_complexity Low_complexity 1 28 0 302 121 0 35 chr3 128961002 128961060 -98563518 + (CATATA)n Simple_repeat Simple_repeat 1 56 0 21 0 0 0 chr3 128961897 128961918 -98562660 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 128964357 128964386 -98560192 + AT_rich Low_complexity Low_complexity 1 29 0 234 0 0 0 chr3 128970910 128970936 -98553642 + (A)n Simple_repeat Simple_repeat 1 26 0 25 51 0 0 chr3 128971487 128971526 -98553052 + AT_rich Low_complexity Low_complexity 1 39 0 243 0 0 0 chr3 128971759 128971786 -98552792 + (A)n Simple_repeat Simple_repeat 1 27 0 288 0 0 0 chr3 128973155 128973187 -98551391 + (TG)n Simple_repeat Simple_repeat 1 32 0 225 0 0 0 chr3 128974108 128974133 -98550445 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr3 128977121 128977142 -98547436 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr3 128979719 128979757 -98544821 + AT_rich Low_complexity Low_complexity 1 38 0 180 77 0 0 chr3 128980701 128980727 -98543851 + (T)n Simple_repeat Simple_repeat 1 26 0 185 128 0 26 chr3 128980924 128980963 -98543615 + (CAAAAA)n Simple_repeat Simple_repeat 4 41 0 22 35 0 0 chr3 128981568 128981597 -98542981 + AT_rich Low_complexity Low_complexity 1 29 0 201 296 0 0 chr3 128982991 128983045 -98541533 - MIR SINE MIR -3 259 206 283 309 32 49 chr3 128983739 128983862 -98540716 + MIR3 SINE MIR 57 177 -31 530 228 134 17 chr3 128984547 128984722 -98539856 + MIR SINE MIR 28 225 -37 2173 102 0 3 chr3 128985815 128986108 -98538470 + AluSx SINE Alu 1 292 -20 299 282 137 23 chr3 128986577 128986708 -98537870 - MIR SINE MIR -49 213 68 232 75 25 0 chr3 128987211 128987251 -98537327 - L1PB2 LINE L1 -3 6148 6108 423 218 225 7 chr3 128987668 128987810 -98536768 - MER5A DNA MER1_type -3 186 14 1833 182 0 0 chr3 128988733 128989035 -98535543 - AluJb SINE Alu -10 302 1 21 0 0 0 chr3 128989102 128989123 -98535455 + AT_rich Low_complexity Low_complexity 1 21 0 706 151 95 8 chr3 128989135 128989261 -98535317 - FLAM_A SINE Alu 0 142 6 2118 148 0 0 chr3 128990967 128991272 -98533306 + AluJb SINE Alu 1 305 -7 723 300 88 7 chr3 128991466 128991749 -98532829 - L3 LINE CR1 -2 1575 1270 936 274 23 30 chr3 128991755 128992018 -98532560 - MIR SINE MIR 0 262 2 249 171 53 92 chr3 128992029 128992105 -98532473 - L3 LINE CR1 -315 1262 1190 410 211 42 0 chr3 128994798 128994893 -98529685 + MER94 DNA DNA 4 102 -32 997 230 28 0 chr3 128995806 128996019 -98528559 - MIR SINE MIR -42 220 2 450 220 11 126 chr3 128996557 128996613 -98527965 - MIR SINE MIR -56 206 145 221 75 25 0 chr3 128996613 128996653 -98527925 + (TTTTG)n Simple_repeat Simple_repeat 1 41 0 2182 101 7 0 chr3 128996653 128996930 -98527648 - AluSx SINE Alu -33 279 1 450 220 11 126 chr3 128996930 128997054 -98527524 - MIR SINE MIR -115 147 46 1694 164 6 53 chr3 128998614 128998937 -98525641 - AluJb SINE Alu -4 308 1 403 341 40 23 chr3 128999632 128999808 -98524770 - MIR3 SINE MIR -19 189 11 227 348 45 18 chr3 129000055 129000167 -98524411 - L2 LINE L2 0 3313 3199 556 259 0 51 chr3 129003252 129003410 -98521168 + MIR SINE MIR 100 249 -13 218 154 26 0 chr3 129003749 129003788 -98520790 - MIR SINE MIR -117 145 106 1784 175 28 0 chr3 129003926 129004217 -98520361 + AluJb SINE Alu 2 300 -12 518 219 9 44 chr3 129005336 129005450 -98519128 + L2 LINE L2 3204 3313 0 2115 138 3 0 chr3 129007018 129007314 -98517264 - AluSx SINE Alu -15 297 1 23 0 0 0 chr3 129010408 129010431 -98514147 + AT_rich Low_complexity Low_complexity 1 23 0 2179 87 10 39 chr3 129010833 129011144 -98513434 + AluSg SINE Alu 1 302 -8 21 36 0 0 chr3 129013327 129013355 -98511223 + AT_rich Low_complexity Low_complexity 1 28 0 265 242 15 0 chr3 129014127 129014193 -98510385 - Tigger8 DNA MER2_type 0 666 600 253 272 31 152 chr3 129015322 129015737 -98508841 + L2 LINE L2 2564 2928 -386 230 204 20 0 chr3 129015813 129015862 -98508716 + L2 LINE L2 3223 3272 0 246 88 0 0 chr3 129016670 129016704 -98507874 + MLT1J LTR MaLR 101 134 -377 437 237 46 0 chr3 129016909 129017040 -98507538 + LTR67 LTR ERVL 410 546 -11 341 303 23 45 chr3 129017531 129017663 -98506915 + L2 LINE L2 3185 3313 0 350 284 74 58 chr3 129018330 129018520 -98506058 - MIR SINE MIR -50 212 20 249 214 10 82 chr3 129018547 129018645 -98505933 - MER103 DNA DNA -36 130 40 23 33 0 0 chr3 129018854 129018884 -98505694 + AT_rich Low_complexity Low_complexity 1 30 0 547 335 0 16 chr3 129020737 129020931 -98503647 - MIR SINE MIR -70 192 2 278 188 12 35 chr3 129020977 129021062 -98503516 - L1ME4a LINE L1 -22 6099 6017 471 289 33 40 chr3 129022330 129022482 -98502096 + MIR SINE MIR 2 152 -110 497 64 51 0 chr3 129022599 129022677 -98501901 - MER69 DNA AcHobo -425 2101 2020 381 276 33 26 chr3 129023052 129023204 -98501374 + MER20 DNA MER1_type 49 201 -18 255 261 58 0 chr3 129023721 129023790 -98500788 - MIR SINE MIR -9 253 181 744 253 12 0 chr3 129024578 129024744 -98499834 - MIR SINE MIR -25 237 70 412 297 81 2 chr3 129024747 129024986 -98499592 + L2 LINE L2 389 703 -2611 3261 264 71 37 chr3 129025072 129026371 -98498207 + L2 LINE L2 701 3313 0 2088 94 4 0 chr3 129026487 129026754 -98497824 - AluSc SINE Alu -41 268 1 247 370 116 23 chr3 129026980 129027326 -98497252 + L2 LINE L2 2881 3258 -14 195 114 0 0 chr3 129027329 129027364 -98497214 + (TGAA)n Simple_repeat Simple_repeat 3 37 0 208 239 14 127 chr3 129031295 129031366 -98493212 + MIR SINE MIR 87 149 -59 208 203 203 0 chr3 129031336 129031395 -98493183 + MIR SINE MIR 119 189 -73 26 0 0 0 chr3 129033150 129033176 -98491402 + AT_rich Low_complexity Low_complexity 1 26 0 994 171 6 6 chr3 129034367 129034542 -98490036 + MIR3 SINE MIR 20 194 -14 22 35 0 0 chr3 129034581 129034610 -98489968 + AT_rich Low_complexity Low_complexity 1 29 0 198 294 217 0 chr3 129036395 129036487 -98488091 - L2 LINE L2 -4 3309 3198 456 77 0 0 chr3 129037641 129037706 -98486872 + (TC)n Simple_repeat Simple_repeat 2 66 0 905 193 32 0 chr3 129038749 129038936 -98485642 + MIR SINE MIR 64 256 -6 1988 102 53 3 chr3 129038998 129039283 -98485295 + AluSc SINE Alu 1 299 -10 350 308 55 0 chr3 129039748 129039894 -98484684 - LTR33 LTR ERVL 0 521 368 530 295 17 17 chr3 129039991 129040164 -98484414 - LTR33 LTR ERVL -308 213 41 487 260 0 10 chr3 129040356 129040460 -98484118 + L2 LINE L2 3211 3313 0 2413 134 44 64 chr3 129042906 129043018 -98481560 - L1MA8 LINE L1 -1 6290 6177 2335 86 3 3 chr3 129043018 129043322 -98481256 + AluSc SINE Alu 1 304 -5 2413 134 44 64 chr3 129043322 129043737 -98480841 - L1MA8 LINE L1 -114 6177 5774 495 363 76 26 chr3 129044229 129044767 -98479811 + L2 LINE L2 2302 2866 -448 424 265 129 0 chr3 129045120 129045252 -98479326 - MIR3 SINE MIR 0 208 60 2052 73 11 0 chr3 129045554 129045840 -98478738 + L1MA1 LINE L1 6014 6302 0 641 318 19 28 chr3 129047504 129047773 -98476805 - MIR SINE MIR 0 262 2 577 153 10 0 chr3 129048005 129048103 -98476475 - MER5A DNA MER1_type -75 114 16 437 289 18 0 chr3 129048745 129048859 -98475719 + MIR3 SINE MIR 77 192 -16 195 69 0 0 chr3 129049411 129049440 -98475138 + (CA)n Simple_repeat Simple_repeat 2 30 0 399 320 79 31 chr3 129049827 129050055 -98474523 - MIR SINE MIR -17 245 7 187 314 0 0 chr3 129050707 129050758 -98473820 + L2 LINE L2 1361 1411 -1903 244 242 42 11 chr3 129051090 129051185 -98473393 - MER103 DNA DNA 0 166 69 182 401 33 40 chr3 129051414 129051566 -98473012 + L2 LINE L2 2901 3051 -221 405 294 8 32 chr3 129053532 129053658 -98470920 + MIR SINE MIR 23 145 -63 275 197 123 90 chr3 129053702 129053824 -98470754 + MIR SINE MIR 128 253 -9 504 0 0 0 chr3 129054494 129054550 -98470028 + (CA)n Simple_repeat Simple_repeat 2 57 0 584 287 0 7 chr3 129057281 129057424 -98467154 + MIR3 SINE MIR 61 202 -6 284 232 0 0 chr3 129058976 129059045 -98465533 + (TA)n Simple_repeat Simple_repeat 2 70 0 234 0 0 0 chr3 129062555 129062581 -98461997 + (T)n Simple_repeat Simple_repeat 1 26 0 281 65 43 0 chr3 129163092 129163138 -98361440 + Tigger2 DNA MER2_type 55 102 -2616 880 158 7 7 chr3 129163146 129163292 -98361286 - MER39 LTR ERV1 -25 682 537 * 2195 154 20 16 chr3 129163288 129163885 -98360693 + Tigger2 DNA MER2_type 101 744 -1974 1244 158 24 20 chr3 129163951 129164204 -98360374 + Tigger2 DNA MER2_type 2461 2714 -4 572 264 55 34 chr3 129164207 129164442 -98360136 - L1M4 LINE L1 -829 5317 5078 2092 107 24 3 chr3 129164693 129164982 -98359596 - AluSc SINE Alu -14 295 1 726 189 91 11 chr3 129165073 129165248 -98359330 - LTR54B LTR ERV1 -2 496 308 21 57 0 0 chr3 129165290 129165325 -98359253 + AT_rich Low_complexity Low_complexity 1 35 0 2151 171 34 0 chr3 129166518 129166868 -98357710 - MLT1A1 LTR MaLR -1 364 3 354 264 181 6 chr3 129166873 129167055 -98357523 + MER112 DNA MER1_type 6 219 -41 230 283 33 76 chr3 129167922 129167977 -98356601 - MIR SINE MIR -100 108 56 1938 146 4 0 chr3 129167977 129168310 -98356268 + AluSx SINE Alu 1 334 0 230 283 33 76 chr3 129168310 129168345 -98356233 - MIR SINE MIR -152 56 21 26 0 0 0 chr3 129168611 129168637 -98355941 + AT_rich Low_complexity Low_complexity 1 26 0 317 186 25 34 chr3 129168637 129168752 -98355826 + MER97a DNA MER1_type? 785 867 -27 2381 92 0 3 chr3 129168913 129169219 -98355359 - AluY SINE Alu -6 305 1 207 167 0 0 chr3 129170856 129170898 -98353680 + CT-rich Low_complexity Low_complexity 2 43 0 225 0 0 0 chr3 129171500 129171525 -98353053 + (T)n Simple_repeat Simple_repeat 1 25 0 1775 214 42 40 chr3 129172135 129172589 -98351989 + MLT1C LTR MaLR 13 467 0 222 288 17 0 chr3 129172782 129172841 -98351737 + MIR SINE MIR 88 147 -115 364 202 229 18 chr3 129173715 129173824 -98350754 + MIR SINE MIR 23 154 -108 574 211 42 4 chr3 129173919 129174156 -98350422 + L1MC/D LINE L1 2870 3157 -2989 * 4993 237 73 13 chr3 129174154 129175790 -98348788 + L1MC/D LINE L1 3739 5476 -743 23 33 0 0 chr3 129177082 129177112 -98347466 + AT_rich Low_complexity Low_complexity 1 30 0 376 293 9 0 chr3 129177380 129177486 -98347092 - L2 LINE L2 -311 2961 2855 678 239 109 5 chr3 129177493 129177677 -98346901 - MIR SINE MIR -26 236 34 926 270 10 36 chr3 129177696 129178003 -98346575 - L2 LINE L2 -410 2904 2606 2714 159 2 5 chr3 129178808 129179248 -98345330 - L1PB4 LINE L1 -1 6155 5717 410 298 122 11 chr3 129180003 129180184 -98344394 + MIR SINE MIR 51 251 -11 2963 204 58 79 chr3 129180318 129180469 -98344109 - L1ME1 LINE L1 -6 6160 6007 2179 159 22 8 chr3 129180469 129180827 -98343751 - MLT1A1 LTR MaLR 0 365 3 2963 204 58 79 chr3 129180827 129181468 -98343110 - L1ME1 LINE L1 -159 6007 5385 2405 70 0 10 chr3 129181468 129181781 -98342797 - AluY SINE Alu -1 310 1 2963 204 58 79 chr3 129181781 129182243 -98342335 - L1ME1 LINE L1 -781 5385 4915 1444 284 38 0 chr3 129182246 129182696 -98341882 - L1ME1 LINE L1 -2262 3884 3418 500 167 12 130 chr3 129182693 129182855 -98341723 - L1 LINE L1 -3246 2900 2758 * 1851 116 14 22 chr3 129183901 129184166 -98340412 + AluSq SINE Alu 1 265 -48 1929 119 7 4 chr3 129184166 129184443 -98340135 + AluSx SINE Alu 33 310 -2 1851 116 14 22 chr3 129184443 129184454 -98340124 + AluSq SINE Alu 265 275 -38 217 227 0 0 chr3 129186460 129186504 -98338074 + (CATA)n Simple_repeat Simple_repeat 4 47 0 2012 118 21 39 chr3 129186949 129187287 -98337291 - LTR64 LTR ERVK -226 332 1 2105 131 3 0 chr3 129187404 129187710 -98336868 - AluSx SINE Alu -5 307 1 188 51 0 77 chr3 129187727 129187766 -98336812 + (A)n Simple_repeat Simple_repeat 1 36 0 185 281 70 0 chr3 129187858 129187915 -98336663 + MIR SINE MIR 103 163 -99 374 266 0 32 chr3 129187936 129188030 -98336548 + L2 LINE L2 3172 3262 -10 403 246 181 0 chr3 129189722 129189860 -98334718 + MIR3 SINE MIR 28 190 -18 2427 85 0 3 chr3 129190266 129190571 -98334007 - AluY SINE Alu -7 304 1 221 327 85 56 chr3 129190907 129191213 -98333365 - L2 LINE L2 -1 3312 2998 2259 121 0 0 chr3 129193234 129193541 -98331037 + AluSx SINE Alu 1 307 -5 389 135 21 21 chr3 129194656 129194752 -98329826 + (TA)n Simple_repeat Simple_repeat 1 96 0 231 207 58 23 chr3 129194763 129194850 -98329728 - L1MC4 LINE L1 -1340 6702 6613 325 327 13 27 chr3 129195228 129195378 -98329200 - MIR SINE MIR -46 216 69 281 289 70 16 chr3 129195416 129195544 -98329034 + MIR SINE MIR 78 212 -50 410 249 174 2 chr3 129195719 129195945 -98328633 - MER5C DNA MER1_type 0 324 1 5427 68 38 1 chr3 129196950 129197617 -98326961 + LTR8 LTR ERV1 1 691 0 1956 104 7 10 chr3 129198365 129198654 -98325924 - AluSc SINE Alu -13 296 9 307 213 25 62 chr3 129199197 129199277 -98325301 + MER46C DNA MER2_type 1 77 -261 540 330 47 8 chr3 129199498 129199734 -98324844 + MIR SINE MIR 1 245 -17 807 113 8 2 chr3 129199802 129200043 -98324535 + AluSx SINE Alu 1 301 -11 1412 81 52 19 chr3 129200245 129200455 -98324123 - AluSc SINE Alu -5 304 88 542 244 339 0 chr3 129200491 129200733 -98323845 + MER5C DNA MER1_type 1 324 0 193 348 177 14 chr3 129200733 129200874 -98323704 - MIR3 SINE MIR -26 182 19 2411 63 0 16 chr3 129201696 129201999 -98322579 + AluY SINE Alu 1 298 -13 225 143 41 0 chr3 129203492 129203541 -98321037 + GA-rich Low_complexity Low_complexity 2 52 0 303 300 91 27 chr3 129205370 129205480 -98319098 - L2 LINE L2 -20 3252 3136 572 307 65 77 chr3 129205546 129205989 -98318589 + L2 LINE L2 2835 3272 0 2018 111 30 13 chr3 129206804 129207102 -98317476 - AluSq SINE Alu -10 303 1 372 341 17 17 chr3 129208589 129208762 -98315816 + L1ME LINE L1 5536 5708 -454 427 293 71 0 chr3 129208853 129208993 -98315585 - MIR SINE MIR -105 157 8 201 39 0 0 chr3 129210244 129210270 -98314308 + (CA)n Simple_repeat Simple_repeat 2 27 0 231 167 0 0 chr3 129211006 129211048 -98313530 + GA-rich Low_complexity Low_complexity 2 43 0 298 281 0 50 chr3 129213705 129213826 -98310752 + GA-rich Low_complexity Low_complexity 3 117 0 276 355 28 21 chr3 129215224 129215365 -98309213 - MIR3 SINE MIR -64 144 3 216 0 0 0 chr3 129216412 129216436 -98308142 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 202 333 246 0 chr3 129217689 129217815 -98306763 - MIR SINE MIR -6 256 100 486 286 23 0 chr3 129218766 129218899 -98305679 - MIR SINE MIR -80 182 47 606 174 20 0 chr3 129220560 129220658 -98303920 - MER41E LTR ERV1 0 512 413 328 191 139 25 chr3 129220778 129220910 -98303668 - MER84-int LTR ERV1 -2783 2957 2039 789 307 19 52 chr3 129220968 129221391 -98303187 - MER84-int LTR ERV1 -3958 2718 2310 2359 79 3 10 chr3 129221512 129221817 -98302761 - AluY SINE Alu -8 303 1 293 163 0 0 chr3 129221825 129221874 -98302704 - MER41E LTR ERV1 -463 49 1 2476 162 17 2 chr3 129222276 129222690 -98301888 + L1P4 LINE L1 3929 4348 -1798 244 176 78 0 chr3 129222702 129222753 -98301825 - L1 LINE L1 -1798 4348 4294 3475 137 32 5 chr3 129222769 129223828 -98300750 + L1P4 LINE L1 4711 5795 -366 1720 134 0 0 chr3 129223816 129224063 -98300515 + L1P LINE L1 4020 4266 -1880 * 7564 181 14 16 chr3 129224069 129226573 -98298005 - L1PB1 LINE L1 0 6151 3658 416 320 153 0 chr3 129227805 129228027 -98296551 + MIR SINE MIR 3 258 -4 261 256 146 12 chr3 129228082 129228164 -98296414 + L2 LINE L2 3179 3271 -1 1576 103 0 0 chr3 129229902 129230106 -98294472 - AluSq SINE Alu -109 204 1 371 192 114 11 chr3 129231092 129231179 -98293399 + MER33 DNA MER1_type 1 88 -93 * 632 177 24 8 chr3 129231178 129231302 -98293276 - MER34C LTR ERV1 -455 130 5 899 172 42 77 chr3 129231422 129231683 -98292895 + MER33 DNA MER1_type 73 324 0 377 258 88 63 chr3 129231703 129231862 -98292716 + MIR SINE MIR 9 171 -91 2188 115 7 0 chr3 129232150 129232445 -98292133 - AluSq SINE Alu -14 299 3 1516 241 160 31 chr3 129232458 129232697 -98291881 - L1ME3A LINE L1 -8 6162 5955 5074 75 81 2 chr3 129232697 129233337 -98291241 - LTR8 LTR ERV1 0 691 1 1516 241 160 31 chr3 129233337 129233774 -98290804 - L1ME3A LINE L1 -215 5955 5378 41645 38 3 3 chr3 129233962 129238948 -98285630 - L1P LINE L1 -1161 4985 2 280 222 44 0 chr3 129239077 129239167 -98285411 + Tigger2 DNA MER2_type 1 94 -2624 12186 201 9 7 chr3 129239300 129242157 -98282421 - L1PA13 LINE L1 -2192 4605 1734 281 222 0 16 chr3 129242163 129242226 -98282352 + MER20 DNA MER1_type 80 141 -78 973 247 75 23 chr3 129242447 129242835 -98281743 - MSTA LTR MaLR -20 408 1 924 215 10 24 chr3 129242850 129242990 -98281588 + MER3 DNA MER1_type 1 139 -70 1713 143 98 0 chr3 129242990 129243288 -98281290 - AluSx SINE Alu 0 312 1 924 215 10 24 chr3 129243288 129243356 -98281222 + MER3 DNA MER1_type 139 206 -3 344 263 111 0 chr3 129243356 129243455 -98281123 + L2 LINE L2 3200 3309 -4 348 286 31 10 chr3 129244744 129244842 -98279736 - MER5B DNA MER1_type -16 162 63 24 53 0 0 chr3 129245152 129245190 -98279388 + AT_rich Low_complexity Low_complexity 1 38 0 878 107 0 0 chr3 129245340 129245461 -98279117 - L1MB1 LINE L1 0 6168 6048 358 272 232 2 chr3 129245686 129245816 -98278762 + MIR SINE MIR 21 173 -81 1890 170 0 0 chr3 129247502 129247819 -98276759 + AluSx SINE Alu 2 318 0 294 302 47 0 chr3 129249826 129249932 -98274646 - L3 LINE CR1 -112 1465 1355 22 80 0 0 chr3 129250393 129250443 -98274135 + AT_rich Low_complexity Low_complexity 1 50 0 1869 128 31 31 chr3 129250445 129250734 -98273844 + AluSq SINE Alu 2 290 -23 237 262 71 0 chr3 129250743 129250827 -98273751 + L1MC4 LINE L1 6614 6703 -1339 297 167 0 0 chr3 129250828 129250882 -98273696 + (TA)n Simple_repeat Simple_repeat 1 54 0 2662 87 0 0 chr3 129251221 129251555 -98273023 - HERVL LTR ERVL -2654 3000 2667 1831 161 11 78 chr3 129253850 129254372 -98270206 - HERVL LTR ERVL -2970 2684 2198 1149 44 0 25 chr3 129254490 129254650 -98269928 - L1P LINE L1 -3095 3051 2896 * 1771 158 15 3 chr3 129254649 129254977 -98269601 + L1 LINE L1 3676 4007 -2139 17750 47 61 4 chr3 129254983 129257255 -98267323 + L1P LINE L1 3 2403 -3743 2706 129 8 69 chr3 129257742 129257898 -98266680 - MER39 LTR ERV1 0 707 543 2178 144 0 3 chr3 129257898 129258211 -98266367 + AluSx SINE Alu 1 312 0 2706 129 8 69 chr3 129258211 129258534 -98266044 - MER39 LTR ERV1 -164 543 257 322 208 10 99 chr3 129258507 129258608 -98265970 - MER39B LTR ERV1 -561 92 1 * 2086 186 48 70 chr3 129258608 129259090 -98265488 - MLT1D LTR MaLR -34 471 1 256 325 0 0 chr3 129259230 129259307 -98265271 - MIR SINE MIR -106 156 80 271 122 20 0 chr3 129259347 129259396 -98265182 - MER39 LTR ERV1 -59 648 599 261 236 0 0 chr3 129259397 129259452 -98265126 - MER34 LTR ERV1 -487 55 1 851 223 19 117 chr3 129259452 129259571 -98265007 + LTR37A LTR ERV1 95 224 -202 2118 110 0 0 chr3 129259571 129259844 -98264734 - AluSx SINE Alu -39 273 1 851 223 19 117 chr3 129259844 129260092 -98264486 + LTR37A LTR ERV1 224 426 0 304 172 0 0 chr3 129260331 129260389 -98264189 + Alu SINE Alu 241 298 -3 467 226 9 43 chr3 129260915 129261030 -98263548 + MIR3 SINE MIR 10 120 -88 382 300 229 19 chr3 129261030 129261297 -98263281 - LTR16A LTR ERVL 0 450 128 768 225 98 96 chr3 129261445 129261992 -98262586 - MLT1H LTR MaLR 0 624 1 199 239 109 65 chr3 129262089 129262181 -98262397 + L2 LINE L2 3217 3312 -1 36 40 0 0 chr3 129262544 129262594 -98261984 + AT_rich Low_complexity Low_complexity 1 50 0 21749 41 5 1 chr3 129262764 129265426 -98259152 + L1P LINE L1 2503 5175 -971 1645 279 109 27 chr3 129265597 129266375 -98258203 - L1MC4a LINE L1 -1671 6137 5296 255 354 20 0 chr3 129266435 129266534 -98258044 - MER5B DNA MER1_type -68 110 10 318 379 39 20 chr3 129267390 129267543 -98257035 - L2 LINE L2 -10 3262 3107 450 335 44 11 chr3 129267781 129267963 -98256615 - MER5A DNA MER1_type 0 189 2 375 288 145 76 chr3 129268384 129268777 -98255801 - L2 LINE L2 -2 3311 2892 390 359 13 26 chr3 129268780 129269011 -98255567 - L2 LINE L2 -568 2746 2519 585 249 149 5 chr3 129269011 129269166 -98255412 - L2 LINE L2 -923 2391 2193 1605 99 40 9 chr3 129269166 129269389 -98255189 - MER30 DNA MER1_type 0 230 1 585 249 149 5 chr3 129269389 129269454 -98255124 - L2 LINE L2 -1121 2193 2139 225 268 70 0 chr3 129269906 129269977 -98254601 - LTR3b LTR ERVK -72 365 290 237 81 0 0 chr3 129270038 129270075 -98254503 - Alu SINE Alu -2 298 262 5650 164 27 19 chr3 129270186 129271786 -98252792 + L1PA16 LINE L1 4554 6157 -9 29 47 0 0 chr3 129271786 129271829 -98252749 + AT_rich Low_complexity Low_complexity 1 43 0 2458 166 91 9 chr3 129271961 129273003 -98251575 + L1PBa LINE L1 487 1758 -5105 7083 83 6 0 chr3 129273003 129273909 -98250669 + HERVL LTR ERVL 1396 2306 -3348 505 99 0 14 chr3 129274042 129274113 -98250465 - THE1C LTR MaLR -305 70 1 1020 243 29 29 chr3 129274118 129274190 -98250388 + L1ME1 LINE L1 5849 5920 -246 2174 148 33 14 chr3 129274190 129274556 -98250022 - MER93b LTR ERV1 0 373 1 1020 243 29 29 chr3 129274556 129274796 -98249782 + L1ME1 LINE L1 5919 6161 -5 2103 131 3 0 chr3 129275025 129275323 -98249255 - AluSx SINE Alu -13 299 1 339 299 47 0 chr3 129275376 129275483 -98249095 + MERVL LTR ERVL 4734 4845 -640 2140 158 33 23 chr3 129275506 129275936 -98248642 + MER57B LTR ERV1 1 434 0 1142 164 51 99 chr3 129275991 129276423 -98248155 - Charlie1 DNA MER1_type 0 2761 2351 2609 136 42 35 chr3 129276924 129276978 -98247600 - LTR22A LTR ERVK 0 458 406 2349 104 0 3 chr3 129276978 129277287 -98247291 + AluSc SINE Alu 1 308 -1 2609 136 42 35 chr3 129277287 129277687 -98246891 - LTR22A LTR ERVK -52 406 1 1035 241 41 10 chr3 129277688 129277983 -98246595 + LTR16C LTR ERVL 176 479 -12 22 35 0 0 chr3 129278369 129278398 -98246180 + AT_rich Low_complexity Low_complexity 1 29 0 334 331 25 25 chr3 129278796 129278953 -98245625 - MER5A DNA MER1_type -30 159 3 1921 107 16 69 chr3 129279836 129280154 -98244424 + AluSx SINE Alu 1 301 -11 389 289 58 32 chr3 129280896 129281052 -98243526 - L2 LINE L2 0 3313 3154 2390 62 0 23 chr3 129282950 129283256 -98241322 - AluY SINE Alu -12 299 1 426 304 121 18 chr3 129283361 129283585 -98240993 - MIR SINE MIR -14 248 2 2464 171 41 45 chr3 129283727 129284240 -98240338 + MLT2B2 LTR ERVL 5 515 0 419 213 75 0 chr3 129284244 129284338 -98240240 - MER20 DNA MER1_type -22 197 97 420 273 40 34 chr3 129284404 129284581 -98239997 - MLT1J1 LTR MaLR -252 198 19 2289 111 0 3 chr3 129284692 129284998 -98239580 - AluSx SINE Alu -7 305 1 2002 153 0 3 chr3 129285593 129285906 -98238672 + AluSx SINE Alu 1 312 0 368 332 158 0 chr3 129286377 129286567 -98238011 - MIR SINE MIR 0 262 43 535 217 110 107 chr3 129286585 129286921 -98237657 - MER46C DNA MER2_type 0 338 2 3594 99 50 9 chr3 129287368 129288002 -98236576 - L1PBa LINE L1 -4307 2556 1897 216 158 0 0 chr3 129288041 129288079 -98236499 + (CATA)n Simple_repeat Simple_repeat 2 39 0 1740 81 31 8 chr3 129288088 129288346 -98236232 - MLT2A1 LTR ERVL -180 264 1 3443 75 6 22 chr3 129288346 129288889 -98235689 - HERVL-A1 LTR ERVL 0 5654 5121 194 139 47 0 chr3 129289121 129289164 -98235414 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 368 219 135 0 chr3 129289670 129289766 -98234812 - L2 LINE L2 0 3313 3205 5190 36 3 6 chr3 129290168 129290811 -98233767 + L1PA3 LINE L1 5515 6155 0 241 309 15 0 chr3 129290878 129290946 -98233632 - L2 LINE L2 -8 3305 3237 339 167 0 30 chr3 129291029 129291095 -98233483 + MER21B LTR ERV1 8 71 -792 971 147 11 6 chr3 129291098 129291275 -98233303 + L1P LINE L1 3991 4168 -1978 5310 209 7 14 chr3 129291413 129292732 -98231846 - L1 LINE L1 -2566 3580 2272 250 314 26 64 chr3 129293071 129293227 -98231351 - L3 LINE CR1 -830 747 598 252 231 0 0 chr3 129293289 129293367 -98231211 + CT-rich Low_complexity Low_complexity 2 79 0 477 370 63 19 chr3 129293522 129293892 -98230686 - L1MD2 LINE L1 -224 5940 5555 964 264 18 7 chr3 129294056 129294329 -98230249 - MLT1F LTR MaLR -168 374 99 349 250 12 0 chr3 129294471 129294643 -98229935 + (TA)n Simple_repeat Simple_repeat 1 174 0 494 353 106 52 chr3 129294866 129295493 -98229085 - L2 LINE L2 0 3272 2617 676 193 0 0 chr3 129295626 129295735 -98228843 - FRAM SINE Alu -58 118 10 782 164 25 6 chr3 129295874 129296033 -98228545 + L1MB3 LINE L1 5939 6100 -83 436 258 101 17 chr3 129296780 129296958 -98227620 - MIR SINE MIR -1 261 69 682 271 23 37 chr3 129297456 129297670 -98226908 - MIR SINE MIR -21 241 31 857 218 83 0 chr3 129299621 129299814 -98224764 - MER3 DNA MER1_type 0 209 1 564 49 25 0 chr3 129299843 129299924 -98224654 - LTR64 LTR ERVK 0 558 476 218 411 7 27 chr3 129302946 129303092 -98221486 + L2 LINE L2 3127 3269 -3 271 213 80 13 chr3 129303244 129303319 -98221259 - Tigger5 DNA MER2_type 0 2323 2244 25 31 0 0 chr3 129303516 129303548 -98221030 + AT_rich Low_complexity Low_complexity 1 32 0 186 125 0 0 chr3 129303917 129303941 -98220637 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr3 129404082 129404103 -98120475 + AT_rich Low_complexity Low_complexity 1 21 0 2191 100 0 10 chr3 129404698 129404997 -98119581 + AluSx SINE Alu 1 296 -16 208 300 17 0 chr3 129406306 129406366 -98118212 - L2 LINE L2 -5 3308 3248 753 358 70 21 chr3 129407711 129408340 -98116238 - L2 LINE L2 -429 2885 2226 984 116 27 7 chr3 129408629 129408776 -98115802 + THE1A LTR MaLR 2 151 -204 4967 124 12 1 chr3 129408901 129409649 -98114929 - L1P3 LINE L1 -5703 758 3 544 213 61 43 chr3 129412667 129412831 -98111747 + MIR SINE MIR 96 262 0 183 114 0 0 chr3 129415905 129415940 -98108638 + (TGGGGG)n Simple_repeat Simple_repeat 2 36 0 195 69 0 0 chr3 129417969 129417998 -98106580 + (CA)n Simple_repeat Simple_repeat 2 30 0 8383 104 20 6 chr3 129418664 129419936 -98104642 + L1P LINE L1 3718 5007 -1139 2035 120 18 0 chr3 129519947 129520223 -98004355 - AluSx SINE Alu -31 281 1 234 277 6 102 chr3 129521450 129521616 -98002962 + MIR3 SINE MIR 53 202 -6 237 159 0 0 chr3 129521671 129521715 -98002863 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 2470 91 0 0 chr3 129524536 129524843 -97999735 - AluSq SINE Alu -6 307 1 411 284 114 40 chr3 129525067 129525268 -97999310 - MIR SINE MIR -32 230 15 258 230 141 122 chr3 129526254 129526355 -97998223 - L3 LINE CR1 -98 1479 1381 2598 106 44 8 chr3 129526355 129526715 -97997863 - THE1C LTR MaLR -2 373 1 258 230 141 122 chr3 129526715 129526826 -97997752 - L3 LINE CR1 -196 1381 1263 619 170 18 0 chr3 129527084 129527196 -97997382 + MER94 DNA DNA 1 114 -20 206 81 27 0 chr3 129528036 129528073 -97996505 + (TTCG)n Simple_repeat Simple_repeat 3 40 0 1898 133 24 3 chr3 129528075 129528369 -97996209 - AluSx SINE Alu -12 300 1 336 356 61 44 chr3 129528932 129529112 -97995466 + L2 LINE L2 3044 3226 -46 536 302 35 0 chr3 129529361 129529529 -97995049 + MIR SINE MIR 53 227 -35 583 247 29 40 chr3 129529678 129529852 -97994726 - MER5A DNA MER1_type 0 189 18 393 296 78 7 chr3 129530962 129531104 -97993474 + MIR SINE MIR 47 198 -64 192 184 0 0 chr3 129531113 129531162 -97993416 + (TTATA)n Simple_repeat Simple_repeat 4 52 0 243 337 23 12 chr3 129531720 129531806 -97992772 + L2 LINE L2 3186 3272 0 318 247 0 45 chr3 129532024 129532113 -97992465 - MIR3 SINE MIR -3 205 121 2251 96 23 0 chr3 129535872 129536215 -97988363 - L1P LINE L1 -4192 1954 1604 242 324 0 14 chr3 129536534 129536608 -97987970 + Charlie4 DNA MER1_type 1888 1960 -1 778 256 103 21 chr3 129537331 129537573 -97987005 - MIR SINE MIR 0 262 1 14148 129 15 16 chr3 129537606 129539168 -97985410 - Tigger1 DNA MER2_type -169 2249 688 2274 75 35 0 chr3 129539168 129539450 -97985128 - AluSc SINE Alu -14 295 4 14148 129 15 16 chr3 129539450 129540137 -97984441 - Tigger1 DNA MER2_type -1730 688 2 297 240 0 0 chr3 129540466 129540541 -97984037 - MER116 DNA Mariner -5 75 1 1975 169 112 68 chr3 129540891 129541375 -97983203 - MLT1D LTR MaLR 0 505 1 310 288 110 0 chr3 129545483 129545601 -97978977 - LTR33A LTR ERVL -170 353 223 314 198 0 99 chr3 129546312 129546393 -97978185 + MER112 DNA MER1_type 5 77 -183 191 233 0 0 chr3 129546635 129546678 -97977900 - L2 LINE L2 0 3272 3230 2064 118 0 3 chr3 129547391 129547678 -97976900 - AluSg SINE Alu -24 286 1 242 289 12 12 chr3 129547680 129547763 -97976815 + CT-rich Low_complexity Low_complexity 3 85 0 378 313 71 0 chr3 129548161 129548273 -97976305 + L2 LINE L2 3145 3264 -8 2202 335 94 21 chr3 129548355 129549819 -97974759 + L2 LINE L2 1102 2672 -642 3055 206 31 22 chr3 129549850 129550560 -97974018 - L1MD2 LINE L1 -10 6349 5634 456 282 162 40 chr3 129550562 129551072 -97973506 + L2 LINE L2 2694 3259 -54 225 0 0 0 chr3 129552476 129552501 -97972077 + (CA)n Simple_repeat Simple_repeat 2 26 0 345 359 86 63 chr3 129554393 129554836 -97969742 + L2 LINE L2 2815 3267 -5 1079 176 0 10 chr3 129557744 129557937 -97966641 - MER3 DNA MER1_type -18 191 1 946 180 87 24 chr3 129559266 129559472 -97965106 - MER20 DNA MER1_type 0 219 1 375 255 113 0 chr3 129559550 129559656 -97964922 - L2 LINE L2 -6 3307 3190 323 338 45 0 chr3 129560241 129560374 -97964204 + L2 LINE L2 3167 3305 -8 2154 108 7 3 chr3 129560374 129560670 -97963908 + AluSg1 SINE Alu 1 297 -12 28 0 0 0 chr3 129562857 129562885 -97961693 + AT_rich Low_complexity Low_complexity 1 28 0 385 273 20 71 chr3 129566080 129566278 -97958300 + L2 LINE L2 3082 3269 -44 1788 284 71 23 chr3 129567043 129568041 -97956537 + L1MC4a LINE L1 5011 5481 -673 37 39 0 0 chr3 129568107 129568158 -97956420 + AT_rich Low_complexity Low_complexity 1 51 0 33 56 0 0 chr3 129568583 129568637 -97955941 + AT_rich Low_complexity Low_complexity 1 54 0 199 260 68 41 chr3 129568667 129568740 -97955838 + L3 LINE CR1 226 300 -1277 26 64 0 0 chr3 129568771 129568818 -97955760 + AT_rich Low_complexity Low_complexity 1 47 0 313 335 100 42 chr3 129569093 129569544 -97955034 - L2 LINE L2 0 3313 2837 204 304 245 0 chr3 129569569 129569671 -97954907 - L2 LINE L2 -234 3079 2953 1989 95 4 4 chr3 129571027 129571290 -97953288 + AluSc SINE Alu 39 301 -8 2300 93 3 3 chr3 129571870 129572182 -97952396 + AluSp SINE Alu 1 312 -1 24 53 0 0 chr3 129572714 129572752 -97951826 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr3 129573557 129573588 -97950990 + AT_rich Low_complexity Low_complexity 1 31 0 556 278 72 0 chr3 129574633 129574813 -97949765 - MIR SINE MIR -4 258 66 300 289 70 18 chr3 129574998 129575112 -97949466 + MIR SINE MIR 99 218 -44 386 82 28 28 chr3 129578970 129579049 -97945529 - MSTB2 LTR MaLR 0 457 350 588 244 105 77 chr3 129579242 129579815 -97944763 - L1ME4a LINE L1 -56 6065 5477 472 308 19 13 chr3 129580337 129580496 -97944082 - MIR3 SINE MIR -14 194 35 26 0 0 0 chr3 129580934 129580960 -97943618 + AT_rich Low_complexity Low_complexity 1 26 0 236 170 0 57 chr3 129581426 129581479 -97943099 - L2 LINE L2 0 3313 3264 23 0 0 0 chr3 129581546 129581569 -97943009 + AT_rich Low_complexity Low_complexity 1 23 0 689 218 43 5 chr3 129581570 129581781 -97942797 + AluYb8 SINE Alu 3 221 -97 2528 167 45 2 chr3 129582309 129582757 -97941821 + MLT1C LTR MaLR 1 467 0 309 207 0 0 chr3 129582795 129582853 -97941725 - L2 LINE L2 -1 3312 3255 519 286 37 31 chr3 129582956 129583117 -97941461 - L2 LINE L2 0 3313 3152 248 316 160 15 chr3 129583536 129583799 -97940779 - L1ME4a LINE L1 -62 6059 5759 517 294 117 52 chr3 129584129 129584633 -97939945 - L1ME4a LINE L1 -94 6027 5491 23 78 0 0 chr3 129584727 129584778 -97939800 + AT_rich Low_complexity Low_complexity 1 51 0 27 0 0 0 chr3 129586111 129586138 -97938440 + AT_rich Low_complexity Low_complexity 1 27 0 209 317 0 0 chr3 129586831 129586891 -97937687 - L2 LINE L2 -78 3235 3176 241 268 189 37 chr3 129587081 129587245 -97937333 - MIR SINE MIR -71 191 3 229 150 25 0 chr3 129587386 129587426 -97937152 - MIR SINE MIR -107 155 115 313 237 40 13 chr3 129589070 129589146 -97935432 + L2 LINE L2 3192 3269 -3 805 324 93 16 chr3 129589540 129589907 -97934671 + L3b LINE CR1 1180 1574 -9 279 0 0 0 chr3 129591574 129591605 -97932973 + (TGG)n Simple_repeat Simple_repeat 3 33 0 694 103 43 0 chr3 129592263 129592379 -97932199 - L1P LINE L1 -3878 2268 2148 7256 274 70 15 chr3 129592427 129594806 -97929772 - L2 LINE L2 -243 3070 560 1991 146 0 7 chr3 129594980 129595275 -97929303 - AluSx SINE Alu -19 293 1 337 265 151 78 chr3 129595321 129595540 -97929038 + L2 LINE L2 3079 3313 0 28 29 0 0 chr3 129596507 129596542 -97928036 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 129596774 129596797 -97927781 + AT_rich Low_complexity Low_complexity 1 23 0 32 0 0 0 chr3 129597416 129597448 -97927130 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr3 129598490 129598514 -97926064 + AT_rich Low_complexity Low_complexity 1 24 0 431 269 119 12 chr3 129598890 129599050 -97925528 + MIR3 SINE MIR 19 195 -13 1041 269 77 10 chr3 129599326 129599697 -97924881 + MLT1J1 LTR MaLR 3 442 -4 196 273 121 15 chr3 129599777 129599843 -97924735 + L2 LINE L2 3187 3259 -54 3716 154 8 5 chr3 129600211 129600810 -97923768 + MER7C DNA MER2_type 1 601 -1 553 320 101 48 chr3 129601067 129601583 -97922995 + L2 LINE L2 1981 2523 -791 31689 100 7 20 chr3 129601950 129608405 -97916173 + L1PA7 LINE L1 3 6469 0 280 252 137 38 chr3 129609682 129609813 -97914765 - MIR SINE MIR -46 216 73 1962 88 13 42 chr3 129610169 129610476 -97914102 - L1PA13 LINE L1 0 6163 5866 463 139 0 0 chr3 129610476 129610555 -97914023 + L1P LINE L1 3307 3385 -2761 183 410 12 0 chr3 129610641 129610724 -97913854 - MIR SINE MIR -92 116 33 220 304 170 9 chr3 129612075 129612187 -97912391 + MIR SINE MIR 76 205 -57 262 291 38 13 chr3 129615321 129615400 -97909178 + L2 LINE L2 2776 2856 -458 342 98 0 0 chr3 129617238 129617289 -97907289 + (TATG)n Simple_repeat Simple_repeat 2 52 0 373 333 63 40 chr3 129618680 129618983 -97905595 + L2 LINE L2 1156 1465 -1849 21 36 0 0 chr3 129619266 129619294 -97905284 + AT_rich Low_complexity Low_complexity 1 28 0 259 125 0 0 chr3 129619378 129619418 -97905160 - L1ME1 LINE L1 -5 6161 6122 24 0 0 0 chr3 129619568 129619592 -97904986 + GC_rich Low_complexity Low_complexity 1 24 0 1137 228 93 31 chr3 129620180 129620504 -97904074 + MER2 DNA MER2_type 1 344 0 285 203 17 0 chr3 129621150 129621209 -97903369 - L2 LINE L2 -4 3309 3250 630 0 0 0 chr3 129621565 129621635 -97902943 + (TTTC)n Simple_repeat Simple_repeat 2 71 0 268 306 122 48 chr3 129621765 129621994 -97902584 + MIR SINE MIR 6 251 -11 717 151 0 0 chr3 129622068 129622174 -97902404 - Tigger1 DNA MER2_type -2299 119 14 182 37 37 0 chr3 129622684 129622711 -97901867 + (CAAAA)n Simple_repeat Simple_repeat 4 31 0 267 257 22 80 chr3 129623002 129623228 -97901350 + L1MEd LINE L1 992 1204 -4915 1419 181 0 31 chr3 129624641 129624895 -97899683 - AluJo SINE Alu -66 246 1 217 269 0 0 chr3 129625023 129625075 -97899503 - MIR SINE MIR -108 154 103 219 333 28 0 chr3 129626497 129626569 -97898009 + L2 LINE L2 2550 2623 -691 187 264 0 57 chr3 129626592 129626645 -97897933 + L2 LINE L2 2924 2973 -299 413 231 25 123 chr3 129626898 129627101 -97897477 - L2 LINE L2 -4 3309 3127 196 309 0 0 chr3 129627826 129627881 -97896697 + MIR SINE MIR 86 140 -122 258 393 0 0 chr3 129628429 129628546 -97896032 + L2 LINE L2 2227 2343 -971 572 303 114 32 chr3 129628683 129629874 -97894704 - L1M4 LINE L1 -1988 4158 2870 1206 283 14 55 chr3 129632030 129632559 -97892019 - L2 LINE L2 -36 3277 2772 198 345 126 18 chr3 129632806 129633029 -97891549 - L2 LINE L2 -337 2977 2731 2358 77 3 3 chr3 129633432 129633730 -97890848 - AluSp SINE Alu -15 298 1 288 306 97 15 chr3 129634480 129634614 -97889964 - MER5A DNA MER1_type -44 145 1 396 97 0 0 chr3 129636182 129636244 -97888334 + (CAG)n Simple_repeat Simple_repeat 1 62 0 206 352 48 9 chr3 129637865 129637970 -97886608 + L2 LINE L2 2600 2708 -606 417 235 41 133 chr3 129639992 129640188 -97884390 - MIR SINE MIR -1 261 84 2100 81 3 54 chr3 129640861 129641194 -97883384 - AluSx SINE Alu 0 318 1 696 327 125 52 chr3 129642614 129643491 -97881087 + L2 LINE L2 2037 2977 -337 236 302 296 16 chr3 129643510 129643699 -97880879 + L2 LINE L2 2701 2942 -372 261 143 48 9 chr3 129645037 129645142 -97879436 + (TA)n Simple_repeat Simple_repeat 1 109 0 26 50 0 0 chr3 129645199 129645239 -97879339 + AT_rich Low_complexity Low_complexity 1 40 0 2128 106 10 7 chr3 129645707 129646000 -97878578 - AluSx SINE Alu -16 296 3 4630 174 23 14 chr3 129646688 129647653 -97876925 + L1M1 LINE L1 1782 2754 -4811 21 0 0 0 chr3 129647852 129647873 -97876705 + AT_rich Low_complexity Low_complexity 1 21 0 261 0 0 0 chr3 129648273 129648302 -97876276 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 282 29 0 0 chr3 129648301 129648336 -97876242 + (GA)n Simple_repeat Simple_repeat 2 36 0 704 314 110 11 chr3 129649153 129649510 -97875068 + LTR16A LTR ERVL 68 457 0 211 240 117 91 chr3 129651210 129651364 -97873214 - MIR3 SINE MIR -26 182 25 333 0 0 0 chr3 129651706 129651743 -97872835 + (TA)n Simple_repeat Simple_repeat 2 38 0 231 325 47 6 chr3 129651845 129652014 -97872564 - MLT1J LTR MaLR 0 511 336 308 250 92 87 chr3 129652104 129652300 -97872278 - MLT1J LTR MaLR -220 291 95 349 248 7 42 chr3 129652366 129652795 -97871783 + CT-rich Low_complexity Low_complexity 1 414 0 198 0 0 0 chr3 129654782 129654804 -97869774 + (CA)n Simple_repeat Simple_repeat 2 23 0 198 313 62 10 chr3 129655181 129655277 -97869301 + MIR SINE MIR 8 108 -154 288 161 0 0 chr3 129655873 129655935 -97868643 + C-rich Low_complexity Low_complexity 1 62 0 1394 193 4 32 chr3 129655940 129656220 -97868358 - AluJo SINE Alu -40 272 1 217 269 0 0 chr3 129656348 129656400 -97868178 - MIR SINE MIR -108 154 103 2310 104 3 0 chr3 129657945 129658254 -97866324 - AluSp SINE Alu -3 310 1 534 258 90 17 chr3 129663923 129664101 -97860477 + MIR SINE MIR 72 262 0 588 274 44 34 chr3 129665569 129665773 -97858805 + MIR3 SINE MIR 3 208 0 653 313 77 4 chr3 129666770 129667003 -97857575 + MIR SINE MIR 13 262 0 21 36 0 0 chr3 129667149 129667177 -97857401 + AT_rich Low_complexity Low_complexity 1 28 0 1636 211 79 171 chr3 129667392 129667541 -97857037 - LTR41 LTR ERVL -1 772 611 1550 181 60 0 chr3 129667541 129667822 -97856756 + AluJb SINE Alu 1 298 -14 1636 211 79 171 chr3 129667822 129668522 -97856056 - LTR41 LTR ERVL -162 611 1 2404 88 13 0 chr3 129669050 129669355 -97855223 - AluSg SINE Alu 0 310 2 349 269 65 19 chr3 129671747 129671855 -97852723 - MIR3 SINE MIR -5 203 91 412 320 65 55 chr3 129672176 129672485 -97852093 + L1M3c LINE L1 173 484 -5829 3296 245 74 18 chr3 129672990 129674572 -97850006 + L1M3c LINE L1 911 2488 -3894 241 26 53 0 chr3 129674572 129674610 -97849968 + (CAA)n Simple_repeat Simple_repeat 2 41 0 3296 245 74 18 chr3 129674610 129674814 -97849764 + L1M3c LINE L1 2488 2679 -3703 633 258 171 53 chr3 129675634 129676162 -97848416 + MLT1L LTR MaLR 19 608 -7 431 299 0 22 chr3 129678195 129678329 -97846249 - MER94 DNA DNA -2 132 2 188 393 0 0 chr3 129678642 129678698 -97845880 + MIR SINE MIR 46 101 -161 27 62 0 0 chr3 129679477 129679525 -97845053 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr3 129680754 129680775 -97843803 + AT_rich Low_complexity Low_complexity 1 21 0 1118 146 6 0 chr3 129682164 129682335 -97842243 + L1PA16 LINE L1 5389 5560 -606 666 144 23 45 chr3 129682335 129682466 -97842112 + L1PA16 LINE L1 6029 6157 -9 22 56 0 0 chr3 129682676 129682712 -97841866 + AT_rich Low_complexity Low_complexity 1 36 0 229 26 53 0 chr3 129684607 129684645 -97839933 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 2243 79 0 0 chr3 129684645 129684924 -97839654 - AluY SINE Alu -32 279 1 303 373 48 8 chr3 129685213 129685339 -97839239 + MIR SINE MIR 20 150 -112 29 60 0 0 chr3 129685813 129685863 -97838715 + AT_rich Low_complexity Low_complexity 1 50 0 227 317 39 19 chr3 129685945 129686049 -97838529 - MIR SINE MIR 0 262 157 228 111 0 0 chr3 129689218 129689254 -97835324 + (A)n Simple_repeat Simple_repeat 1 36 0 1703 224 92 45 chr3 129689684 129690259 -97834319 - L1ME2 LINE L1 0 6098 5497 6077 253 74 57 chr3 129690260 129692905 -97831673 - L1ME2 LINE L1 -1389 4691 1957 2780 19 0 0 chr3 129692905 129693219 -97831359 - AluYb8 SINE Alu -4 314 1 6077 253 74 57 chr3 129693219 129694412 -97830166 - L1ME2 LINE L1 -4123 1957 785 1009 142 0 26 chr3 129694423 129694578 -97830000 - AluSg/x SINE Alu -24 288 138 391 258 99 28 chr3 129694614 129694827 -97829751 - L1ME2 LINE L1 -5279 791 564 539 296 95 60 chr3 129695038 129695491 -97829087 - L1ME2 LINE L1 -5539 531 63 213 320 62 0 chr3 129696005 129696102 -97828476 - MIR SINE MIR -38 224 122 36 0 0 0 chr3 129697637 129697673 -97826905 + AT_rich Low_complexity Low_complexity 1 36 0 7808 17 37 0 chr3 129699572 129700569 -97824009 - L1PA2 LINE L1 -1 6154 5149 9068 29 0 0 chr3 129700569 129701657 -97822921 + L1P LINE L1 1501 2588 -3558 216 0 0 0 chr3 129702273 129702297 -97822281 + (CA)n Simple_repeat Simple_repeat 2 25 0 208 236 146 0 chr3 129702565 129702620 -97821958 + L2 LINE L2 3208 3270 -2 2045 132 6 52 chr3 129702772 129703136 -97821442 + MER7A DNA MER2_type 1 345 -1 975 39 77 8 chr3 129704762 129704892 -97819686 + MER85 DNA T2_type 1 139 0 647 247 41 0 chr3 129705879 129706049 -97818529 + MIR SINE MIR 18 194 -68 21 36 0 0 chr3 129706428 129706456 -97818122 + AT_rich Low_complexity Low_complexity 1 28 0 747 177 66 97 chr3 129706713 129706939 -97817639 + MER20 DNA MER1_type 1 219 0 881 171 29 12 chr3 129708930 129709100 -97815478 + MER69A DNA AcHobo 1 173 -4 206 276 181 26 chr3 129710387 129710503 -97814075 + MIR SINE MIR 20 153 -109 277 296 99 42 chr3 129710554 129710696 -97813882 + MER5B DNA MER1_type 27 176 -2 206 237 61 123 chr3 129710987 129711101 -97813477 + MIR SINE MIR 155 261 -1 180 152 0 0 chr3 129712511 129712544 -97812034 + (CATA)n Simple_repeat Simple_repeat 2 34 0 235 49 49 0 chr3 129712720 129712761 -97811817 + (TA)n Simple_repeat Simple_repeat 2 44 0 31 0 0 0 chr3 129712764 129712795 -97811783 + AT_rich Low_complexity Low_complexity 1 31 0 202 200 0 0 chr3 129713516 129713551 -97811027 + (CAA)n Simple_repeat Simple_repeat 1 35 0 899 255 51 0 chr3 129713553 129713769 -97810809 - MIR SINE MIR 0 262 36 534 271 182 0 chr3 129713906 129714076 -97810502 + MIR SINE MIR 3 203 -59 209 231 164 29 chr3 129714238 129714342 -97810236 - MIR SINE MIR -16 246 129 195 248 121 85 chr3 129714353 129714441 -97810137 - MIR SINE MIR -3 259 163 2266 87 7 0 chr3 129714441 129714740 -97809838 - AluSc SINE Alu -8 301 1 195 248 121 85 chr3 129714740 129714792 -97809786 - MIR SINE MIR -99 163 114 1944 167 27 3 chr3 129714979 129715308 -97809270 + MER1B DNA MER1_type 1 337 0 6699 70 2 2 chr3 129716723 129717953 -97806625 + L1PA7 LINE L1 4912 6140 -14 222 290 63 72 chr3 129718688 129718828 -97805750 - MIR SINE MIR -7 255 116 2175 116 0 3 chr3 129718828 129719130 -97805448 - AluSx SINE Alu -11 301 1 222 290 63 72 chr3 129719130 129719210 -97805368 - MIR SINE MIR -146 116 37 382 239 158 43 chr3 129719325 129719559 -97805019 - MIR SINE MIR 0 262 2 227 306 0 24 chr3 129719568 129719653 -97804925 + MIR SINE MIR 174 256 -6 239 306 0 14 chr3 129720517 129720589 -97803989 + MLT1H1 LTR MaLR 47 117 -438 212 184 20 0 chr3 129722042 129722091 -97802487 + T-rich Low_complexity Low_complexity 5 54 0 22 0 0 0 chr3 129723485 129723507 -97801071 + AT_rich Low_complexity Low_complexity 1 22 0 300 91 0 0 chr3 129724599 129724643 -97799935 + (CAA)n Simple_repeat Simple_repeat 1 44 0 198 103 0 0 chr3 129725279 129725308 -97799270 + (A)n Simple_repeat Simple_repeat 1 29 0 2088 128 0 0 chr3 129725617 129725930 -97798648 + AluSx SINE Alu 1 312 0 962 93 7 0 chr3 129725932 129726072 -97798506 + L1PA16 LINE L1 6026 6166 0 420 243 116 21 chr3 129728947 129729136 -97795442 + L1MC5 LINE L1 7726 7932 -29 440 251 195 34 chr3 129729178 129729557 -97795021 + L1ME4a LINE L1 5680 6119 -2 237 351 0 11 chr3 129731128 129731222 -97793356 + MIR SINE MIR 94 186 -76 22 0 0 0 chr3 129732980 129733002 -97791576 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 129733287 129733308 -97791270 + AT_rich Low_complexity Low_complexity 1 21 0 234 128 0 0 chr3 129734466 129734505 -97790073 + (GA)n Simple_repeat Simple_repeat 2 40 0 306 125 0 0 chr3 129734732 129734780 -97789798 + (A)n Simple_repeat Simple_repeat 1 48 0 295 274 12 12 chr3 129735404 129735488 -97789090 + GA-rich Low_complexity Low_complexity 5 88 0 277 293 0 27 chr3 129736518 129736593 -97787985 + L2 LINE L2 3236 3308 -5 298 305 116 0 chr3 129737483 129737578 -97787000 - MIR SINE MIR -59 149 44 339 310 127 42 chr3 129739157 129739370 -97785208 - MIR SINE MIR -6 256 26 1582 126 4 42 chr3 129739760 129740021 -97784557 + AluJb SINE Alu 35 285 -27 183 100 0 0 chr3 129740075 129740105 -97784473 + (TG)n Simple_repeat Simple_repeat 1 30 0 240 35 0 0 chr3 129740336 129740365 -97784213 + (TG)n Simple_repeat Simple_repeat 2 30 0 217 132 0 0 chr3 129740665 129740703 -97783875 + (TG)n Simple_repeat Simple_repeat 1 38 0 217 132 19 19 chr3 129742036 129742089 -97782489 + (TA)n Simple_repeat Simple_repeat 2 54 0 337 306 71 15 chr3 129742364 129742520 -97782058 - MIR3 SINE MIR -43 165 2 465 309 123 0 chr3 129742619 129742781 -97781797 - MIR SINE MIR -21 241 60 438 332 31 16 chr3 129743738 129743924 -97780654 + MIR SINE MIR 3 188 -62 1016 274 30 9 chr3 129746045 129746384 -97778194 + L1ME4a LINE L1 5564 5909 -212 297 331 63 8 chr3 129747290 129747417 -97777161 + MER5B DNA MER1_type 45 178 0 1256 298 115 31 chr3 129747976 129749021 -97775557 + L2 LINE L2 2194 3313 0 301 325 0 0 chr3 129749423 129749503 -97775075 + L2 LINE L2 3233 3312 -1 208 245 57 0 chr3 129749637 129749690 -97774888 + L2 LINE L2 3186 3241 -31 2450 73 0 7 chr3 129750040 129750343 -97774235 + AluSp SINE Alu 1 301 -12 465 260 70 0 chr3 129750515 129750615 -97773963 + MER81 DNA DNA 8 114 0 24 67 0 0 chr3 129751433 129751478 -97773100 + AT_rich Low_complexity Low_complexity 1 45 0 252 0 0 0 chr3 129754628 129754656 -97769922 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 356 362 14 0 chr3 129754706 129754865 -97769713 + MIR SINE MIR 32 191 -67 197 260 247 41 chr3 129754962 129755108 -97769470 - MIR3 SINE MIR -3 205 30 655 338 112 12 chr3 129755284 129755607 -97768971 + L2 LINE L2 1713 2067 -1247 227 105 70 0 chr3 129757737 129757794 -97766784 + (TA)n Simple_repeat Simple_repeat 2 62 0 947 239 88 0 chr3 129759146 129759384 -97765194 - MIR SINE MIR -3 259 1 255 345 36 9 chr3 129759656 129759766 -97764812 + L2 LINE L2 3200 3312 -1 233 283 30 40 chr3 129759824 129759923 -97764655 + MIR SINE MIR 20 117 -145 447 292 11 28 chr3 129761197 129761375 -97763203 + MER5B DNA MER1_type 1 175 -3 2332 73 6 16 chr3 129761532 129761845 -97762733 - AluY SINE Alu -1 310 1 206 246 0 101 chr3 129762032 129762101 -97762477 - L3b LINE CR1 -2 1581 1520 358 280 179 34 chr3 129762176 129762383 -97762195 + MIR SINE MIR 13 249 -13 42 36 0 0 chr3 129762552 129762608 -97761970 + AT_rich Low_complexity Low_complexity 1 56 0 407 252 141 15 chr3 129762609 129762744 -97761834 - MER5A DNA MER1_type -31 158 7 1019 147 79 11 chr3 129764108 129764285 -97760293 - MER5A DNA MER1_type 0 189 1 2335 101 0 0 chr3 129764305 129764613 -97759965 + AluY SINE Alu 1 308 -3 207 232 0 18 chr3 129765510 129765566 -97759012 + (TAA)n Simple_repeat Simple_repeat 3 57 0 643 66 0 0 chr3 129766494 129766585 -97757993 - L1P LINE L1 -741 5420 5330 1119 128 0 11 chr3 129766585 129766764 -97757814 + L1PA10 LINE L1 5989 6166 -2 1561 172 46 33 chr3 129767469 129767771 -97756807 - AluJo SINE Alu -6 306 1 184 331 63 63 chr3 129767787 129767852 -97756726 - L3 LINE CR1 -2 1575 1511 691 108 158 0 chr3 129767852 129767878 -97756700 + MER85 DNA T2_type 1 22 -117 213 39 0 0 chr3 129767878 129767904 -97756674 + (TG)n Simple_repeat Simple_repeat 1 26 0 691 108 158 0 chr3 129767904 129767997 -97756581 + MER85 DNA T2_type 22 139 0 184 331 63 63 chr3 129767997 129768073 -97756505 - L3 LINE CR1 -65 1512 1434 1517 182 55 34 chr3 129768095 129768475 -97756103 + MLT1B LTR MaLR 1 388 -2 227 331 72 14 chr3 129768508 129768647 -97755931 - MIR SINE MIR -81 181 35 525 333 67 16 chr3 129768694 129768949 -97755629 - L3 LINE CR1 -189 1388 1121 726 315 60 13 chr3 129769015 129769329 -97755249 - L3 LINE CR1 -730 847 519 226 149 64 0 chr3 129771355 129771402 -97753176 - L1MA9 LINE L1 -32 6280 6231 189 94 0 0 chr3 129771842 129771874 -97752704 + (TAAA)n Simple_repeat Simple_repeat 4 35 0 24 32 0 0 chr3 129771926 129771957 -97752621 + AT_rich Low_complexity Low_complexity 1 31 0 2999 132 35 92 chr3 129772130 129772727 -97751851 - MER6A DNA MER2_type 0 605 43 536 281 32 54 chr3 129773774 129773995 -97750583 + MIR SINE MIR 47 262 0 23 33 0 0 chr3 129775998 129776028 -97748550 + AT_rich Low_complexity Low_complexity 1 30 0 551 105 0 0 chr3 129776667 129776743 -97747835 - AluJ/FLAM SINE Alu -236 76 1 340 250 95 26 chr3 129776827 129776943 -97747635 + MER5A DNA MER1_type 64 187 -2 222 283 71 40 chr3 129777392 129777491 -97747087 - MIR SINE MIR -127 135 34 2073 100 19 29 chr3 129779267 129779577 -97745001 + AluSg1 SINE Alu 1 307 -2 197 103 0 103 chr3 129780086 129780125 -97744453 - MIR SINE MIR -59 149 115 806 314 18 4 chr3 129780162 129780386 -97744192 - MIR SINE MIR -27 235 9 679 277 0 28 chr3 129780386 129780563 -97744015 + MER5B DNA MER1_type 1 172 -6 610 219 116 0 chr3 129781261 129781407 -97743171 + MER5A DNA MER1_type 1 163 -26 182 310 28 90 chr3 129781559 129781704 -97742874 - MIR SINE MIR -87 175 40 192 125 0 0 chr3 129783457 129783489 -97741089 + (TAA)n Simple_repeat Simple_repeat 1 32 0 2092 128 10 3 chr3 129784957 129785254 -97739324 + AluSx SINE Alu 1 299 -13 2708 16 7 3 chr3 129785310 129785620 -97738958 + AluY SINE Alu 1 311 0 795 75 6 56 chr3 129785953 129786113 -97738465 + (TTTC)n Simple_repeat Simple_repeat 4 155 0 1899 147 7 3 chr3 129786945 129787244 -97737334 + AluSg SINE Alu 1 300 -10 468 0 0 0 chr3 129787244 129787296 -97737282 + (GGAA)n Simple_repeat Simple_repeat 1 52 0 392 315 146 3 chr3 129787381 129787558 -97737020 + MIR SINE MIR 9 219 -43 202 321 250 0 chr3 129788912 129789052 -97735526 - MIR SINE MIR -12 250 76 221 175 0 0 chr3 129789651 129789691 -97734887 + (TAA)n Simple_repeat Simple_repeat 1 40 0 796 264 29 17 chr3 129789699 129789938 -97734640 - MIR SINE MIR 0 262 21 21 36 0 0 chr3 129790886 129790914 -97733664 + AT_rich Low_complexity Low_complexity 1 28 0 690 165 28 6 chr3 129790932 129791108 -97733470 + (TA)n Simple_repeat Simple_repeat 1 180 0 2183 113 3 0 chr3 129791117 129791408 -97733170 - AluSx SINE Alu -20 292 1 432 294 63 0 chr3 129791433 129791559 -97733019 + L2 LINE L2 3171 3304 -9 27 0 0 0 chr3 129792404 129792431 -97732147 + AT_rich Low_complexity Low_complexity 1 27 0 458 325 31 12 chr3 129792645 129792805 -97731773 - MER5A DNA MER1_type -1 188 26 24 67 0 0 chr3 129793227 129793272 -97731306 + AT_rich Low_complexity Low_complexity 1 45 0 25 0 0 0 chr3 129795482 129795507 -97729071 + AT_rich Low_complexity Low_complexity 1 25 0 266 324 0 0 chr3 129797421 129797489 -97727089 - L2 LINE L2 -1 3271 3204 21 0 0 0 chr3 129797804 129797825 -97726753 + AT_rich Low_complexity Low_complexity 1 21 0 254 338 176 55 chr3 129797875 129798165 -97726413 - L2 LINE L2 0 3272 2948 238 235 0 0 chr3 129798844 129798895 -97725683 - L2 LINE L2 0 3313 3263 681 278 0 0 chr3 129798938 129799100 -97725478 - MIR SINE MIR 0 262 101 2129 129 3 0 chr3 129799228 129799537 -97725041 + AluSx SINE Alu 3 312 0 187 337 23 23 chr3 129801226 129801312 -97723266 + MIR SINE MIR 68 153 -109 591 147 26 0 chr3 129801402 129801518 -97723060 + L1MA7 LINE L1 6172 6290 -1 2384 189 33 7 chr3 129802875 129803330 -97721248 + MLT1C LTR MaLR 1 467 0 369 0 0 0 chr3 129804163 129804204 -97720374 + (TG)n Simple_repeat Simple_repeat 2 42 0 358 196 15 0 chr3 129805195 129805334 -97719244 + GA-rich Low_complexity Low_complexity 1 141 0 29 60 0 0 chr3 129805960 129806010 -97718568 + AT_rich Low_complexity Low_complexity 1 50 0 366 313 47 56 chr3 129806361 129806575 -97718003 - MIR SINE MIR -50 212 1 677 79 0 40 chr3 129806949 129807050 -97717528 + L1PB1 LINE L1 5699 5795 -356 211 195 73 12 chr3 129807050 129807175 -97717403 + (CATATA)n Simple_repeat Simple_repeat 1 132 0 405 0 0 0 chr3 129807226 129807271 -97717307 + (TA)n Simple_repeat Simple_repeat 2 46 0 2048 120 5 76 chr3 129807271 129807450 -97717128 + L1PB1 LINE L1 5794 5984 -167 2066 139 0 0 chr3 129807450 129807745 -97716833 + AluSx SINE Alu 1 295 -17 2048 120 5 76 chr3 129807745 129807888 -97716690 + L1PB1 LINE L1 5984 6087 -64 1473 123 0 56 chr3 129807888 129808139 -97716439 + AluSq SINE Alu 59 295 -18 2048 120 5 76 chr3 129808139 129808198 -97716380 + L1PB1 LINE L1 6087 6149 -2 1416 156 0 13 chr3 129808429 129808667 -97715911 - MER46A DNA MER2_type -1 235 1 2055 105 7 3 chr3 129809761 129810046 -97714532 + AluSx SINE Alu 25 310 -2 1840 242 101 37 chr3 129810431 129810977 -97713601 + MLT1E2 LTR MaLR 1 581 -45 1328 210 4 4 chr3 129811541 129811808 -97712770 - AluJb SINE Alu -34 278 12 358 343 71 7 chr3 129812438 129812578 -97712000 + MIR SINE MIR 16 164 -98 2207 138 0 0 chr3 129815591 129815903 -97708675 - AluSx SINE Alu 0 312 1 2296 95 0 3 chr3 129817024 129817319 -97707259 - AluY SINE Alu -13 298 5 1914 159 0 0 chr3 129817840 129818136 -97706442 - AluSx SINE Alu -16 296 1 189 349 266 0 chr3 129818368 129818477 -97706101 - L2 LINE L2 -17 3255 3118 1500 197 10 17 chr3 129819021 129819316 -97705262 + AluJb SINE Alu 9 301 -11 180 317 118 37 chr3 129824033 129824194 -97700384 + L3 LINE CR1 951 1124 -453 21 0 0 0 chr3 129824929 129824950 -97699628 + AT_rich Low_complexity Low_complexity 1 21 0 859 283 225 12 chr3 129825706 129826275 -97698303 + L2 LINE L2 2625 3313 0 192 77 0 0 chr3 129826798 129826824 -97697754 + (T)n Simple_repeat Simple_repeat 1 26 0 1807 220 81 33 chr3 129826961 129827443 -97697135 + MLT1D LTR MaLR 1 505 0 1724 100 67 0 chr3 129828012 129828252 -97696326 + AluSp SINE Alu 1 256 -57 6590 32 0 4 chr3 129828252 129829074 -97695504 + L1PA4 LINE L1 5374 6155 0 382 117 0 0 chr3 129829074 129829134 -97695444 + AluSp SINE Alu 233 292 -11 24 0 0 0 chr3 129829643 129829667 -97694911 + AT_rich Low_complexity Low_complexity 1 24 0 27 0 0 0 chr3 129830335 129830362 -97694216 + AT_rich Low_complexity Low_complexity 1 27 0 315 154 19 0 chr3 129830980 129831032 -97693546 - MIR3 SINE MIR -32 176 124 2398 88 0 0 chr3 129831266 129831563 -97693015 - AluSc SINE Alu -12 297 1 943 211 67 18 chr3 129831928 129832151 -97692427 + MIR SINE MIR 29 262 0 2130 118 56 34 chr3 129832429 129832785 -97691793 + THE1B LTR MaLR 1 364 0 200 317 97 59 chr3 129833797 129833983 -97690595 - L2 LINE L2 0 3313 3121 2280 98 3 0 chr3 129834291 129834586 -97689992 + AluSc SINE Alu 1 296 -13 566 255 181 10 chr3 129835646 129835850 -97688728 - MIR SINE MIR 0 262 24 209 294 0 0 chr3 129835907 129835958 -97688620 + MIR SINE MIR 89 139 -69 546 202 0 42 chr3 129835959 129836078 -97688500 - MER58 DNA MER1_type -1 2419 2306 23 0 0 0 chr3 129836351 129836374 -97688204 + AT_rich Low_complexity Low_complexity 1 23 0 1428 184 60 43 chr3 129836403 129836772 -97687806 - L1MA9 LINE L1 0 6312 5938 581 95 12 0 chr3 129836772 129836856 -97687722 - L1PA10 LINE L1 0 6168 6084 2378 53 0 7 chr3 129836920 129837222 -97687356 - L1PA7 LINE L1 -2 6152 5853 586 200 7 75 chr3 129837511 129837758 -97686820 + L1ME1 LINE L1 5445 5843 -323 1492 188 30 24 chr3 129837758 129838056 -97686522 - AluJo SINE Alu -12 300 1 586 200 7 75 chr3 129838056 129838098 -97686480 + L1ME1 LINE L1 5843 5886 -280 258 98 0 0 chr3 129838103 129838154 -97686424 - LTR66 LTR ERVL -166 444 394 316 308 0 11 chr3 129838180 129838271 -97686307 - L1MC4 LINE L1 -1339 6703 6614 676 232 88 36 chr3 129838276 129838470 -97686108 + L1ME1 LINE L1 5913 6116 -50 1999 173 128 8 chr3 129838960 129839400 -97685178 - L1MB3 LINE L1 -1 6182 5689 2430 118 8 8 chr3 129839500 129839864 -97684714 - THE1B LTR MaLR 0 364 1 305 342 45 9 chr3 129840194 129840305 -97684273 + MER5B DNA MER1_type 64 178 0 231 103 0 0 chr3 129840768 129840807 -97683771 + (CA)n Simple_repeat Simple_repeat 2 40 0 416 301 68 27 chr3 129841736 129841882 -97682696 - MIR3 SINE MIR -6 202 51 343 306 56 27 chr3 129842032 129842267 -97682311 - MIR SINE MIR -9 253 13 230 262 122 52 chr3 129842424 129842596 -97681982 - MIR SINE MIR -72 190 7 2195 114 3 13 chr3 129843132 129843447 -97681131 + AluSq SINE Alu 1 312 -1 22 80 0 0 chr3 129845671 129845721 -97678857 + AT_rich Low_complexity Low_complexity 1 50 0 645 184 0 40 chr3 129849219 129849344 -97675234 - MLT1C LTR MaLR 0 467 348 323 321 96 30 chr3 129849874 129850145 -97674433 - L2 LINE L2 -840 2474 2186 359 296 154 0 chr3 129850164 129850326 -97674252 + MIR SINE MIR 20 206 -56 266 167 42 0 chr3 129850476 129850524 -97674054 + MER112 DNA MER1_type 208 257 -3 205 178 0 0 chr3 129851534 129851579 -97672999 + A-rich Low_complexity Low_complexity 1 45 0 207 339 119 0 chr3 129851817 129851926 -97672652 + MIR3 SINE MIR 83 204 -4 23 33 0 0 chr3 129851954 129851984 -97672594 + AT_rich Low_complexity Low_complexity 1 30 0 235 330 10 48 chr3 129852783 129852886 -97671692 - L2 LINE L2 -27 3286 3188 486 0 0 0 chr3 129853959 129854013 -97670565 + (TAAAA)n Simple_repeat Simple_repeat 2 55 0 219 69 0 0 chr3 129854506 129854535 -97670043 + (T)n Simple_repeat Simple_repeat 1 29 0 26 30 0 0 chr3 129855234 129855267 -97669311 + AT_rich Low_complexity Low_complexity 1 33 0 322 265 10 20 chr3 129856263 129856365 -97668213 + CT-rich Low_complexity Low_complexity 2 102 0 21 0 0 0 chr3 129856993 129857014 -97667564 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 129857441 129857461 -97667117 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 25 51 0 0 chr3 129857793 129857832 -97666746 + AT_rich Low_complexity Low_complexity 1 39 0 807 236 143 35 chr3 129857856 129858255 -97666323 - L1MC5 LINE L1 -44 7917 7476 * 2768 182 50 9 chr3 129858250 129858795 -97665783 - L1MD3 LINE L1 0 7995 7429 3356 200 69 52 chr3 129858814 129860339 -97664239 - L1MB8 LINE L1 -5 6173 4616 787 201 38 68 chr3 129860343 129860607 -97663971 - L1MB8 LINE L1 -1737 4409 4154 892 252 50 43 chr3 129860669 129860971 -97663607 - L1MB8 LINE L1 -1954 4192 3889 296 220 22 0 chr3 129861074 129861165 -97663413 - L1MB8 LINE L1 -2959 3187 3095 2150 266 64 68 chr3 129861212 129862746 -97661832 - L1M4c LINE L1 -4537 2107 532 4007 106 235 136 chr3 129864291 129865649 -97658929 - pTR5 LTR ERV1 0 2438 743 1870 174 0 0 chr3 129865900 129866204 -97658374 + AluJb SINE Alu 1 304 -8 203 133 44 0 chr3 129866219 129866264 -97658314 + (TATAA)n Simple_repeat Simple_repeat 3 49 0 31 26 0 0 chr3 129866646 129866684 -97657894 + AT_rich Low_complexity Low_complexity 1 38 0 194 179 18 0 chr3 129866698 129866754 -97657824 + (TA)n Simple_repeat Simple_repeat 2 58 0 324 319 199 7 chr3 129867202 129867343 -97657235 + MER91A DNA MER1_type 19 186 -10 459 0 0 0 chr3 129869624 129869675 -97654903 + (CA)n Simple_repeat Simple_repeat 2 52 0 2184 96 4 0 chr3 129869684 129870005 -97654573 + AluSp SINE Alu 5 326 0 290 301 66 15 chr3 129870082 129870218 -97654360 + L2 LINE L2 3162 3304 -9 254 231 0 46 chr3 129870909 129870974 -97653604 + L2 LINE L2 3248 3309 -4 428 335 94 46 chr3 129871038 129871411 -97653167 + L1ME4a LINE L1 3911 4301 -1845 295 222 28 14 chr3 129871442 129871514 -97653064 + Tigger5 DNA MER2_type 2251 2323 0 355 282 127 28 chr3 129871638 129871957 -97652621 + L1ME4a LINE L1 4482 4835 -1311 530 292 80 38 chr3 129872488 129873015 -97651563 + L1ME4a LINE L1 5573 6121 0 266 290 0 0 chr3 129875160 129875222 -97649356 + L2 LINE L2 3203 3264 -8 302 355 16 8 chr3 129878283 129878404 -97646174 + MIR3 SINE MIR 87 208 0 251 330 9 9 chr3 129878869 129878975 -97645603 - MIR SINE MIR -7 255 150 212 363 80 0 chr3 129879378 129879491 -97645087 + MIR3 SINE MIR 59 180 -28 563 271 84 10 chr3 129881165 129881368 -97643210 - HsTC2 DNA Tc2 -1086 812 595 270 307 80 49 chr3 129882095 129882258 -97642320 - MIR3 SINE MIR -25 183 16 789 229 49 40 chr3 129882980 129883203 -97641375 - MIR SINE MIR -19 243 19 304 318 219 4 chr3 129883291 129883565 -97641013 - L3 LINE CR1 -62 1515 1183 717 242 16 32 chr3 129883697 129883887 -97640691 + MIR SINE MIR 6 192 -70 210 313 134 62 chr3 129884155 129884334 -97640244 + MIR3 SINE MIR 12 203 -5 1540 201 13 19 chr3 129885951 129886259 -97638319 - AluJo SINE Alu -6 306 1 367 278 40 40 chr3 129886265 129886416 -97638162 - MIR SINE MIR -92 170 20 999 327 117 44 chr3 129888964 129889764 -97634814 + L2 LINE L2 2366 3234 -79 1043 273 103 45 chr3 129889764 129890276 -97634302 - MLT1F LTR MaLR 0 542 1 999 327 117 44 chr3 129890276 129890330 -97634248 + L2 LINE L2 3234 3283 -30 235 209 0 0 chr3 129890500 129890543 -97634035 + MIR SINE MIR 117 159 -103 1505 197 0 25 chr3 129891555 129891936 -97632642 + AluJb SINE Alu 10 383 0 1221 213 86 61 chr3 129891992 129892448 -97632130 + MLT1C LTR MaLR 1 467 0 341 288 98 8 chr3 129892513 129892645 -97631933 + MIR SINE MIR 36 179 -83 29 47 0 0 chr3 129893358 129893401 -97631177 + AT_rich Low_complexity Low_complexity 1 43 0 653 341 89 43 chr3 129893439 129893879 -97630699 - L2 LINE L2 0 3272 2813 547 290 140 44 chr3 129893871 129894371 -97630207 - L2 LINE L2 -655 2659 2112 * 22 0 0 0 chr3 129894708 129894730 -97629848 + AT_rich Low_complexity Low_complexity 1 22 0 493 338 36 36 chr3 129894889 129895111 -97629467 - L2 LINE L2 -62 3210 2989 1636 135 86 50 chr3 129895293 129895655 -97628923 + THE1C LTR MaLR 1 375 0 333 267 60 17 chr3 129895811 129895927 -97628651 - MIR SINE MIR -111 151 31 708 182 0 0 chr3 129895971 129896092 -97628486 - AluJb SINE Alu -191 121 1 2172 97 0 33 chr3 129896111 129896410 -97628168 - AluSx SINE Alu -23 289 1 1042 235 9 51 chr3 129896418 129896733 -97627845 + L1ME1 LINE L1 5674 5975 -191 378 0 0 0 chr3 129896754 129896796 -97627782 + (TA)n Simple_repeat Simple_repeat 2 43 0 1285 124 0 0 chr3 129896796 129896974 -97627604 + FRAM SINE Alu 1 176 0 1465 197 32 50 chr3 129896977 129897524 -97627054 - L1ME LINE L1 -505 5661 5119 285 315 22 0 chr3 129897577 129897666 -97626912 + L2 LINE L2 3222 3312 -1 287 346 115 6 chr3 129899546 129899702 -97624876 + MARNA DNA Mariner 7 179 -407 183 308 0 31 chr3 129900219 129900284 -97624294 + L2 LINE L2 3210 3272 0 2392 92 0 0 chr3 129902322 129902625 -97621953 - AluSx SINE Alu -9 303 1 845 209 25 96 chr3 129902879 129903118 -97621460 - MIR SINE MIR -38 224 3 609 296 82 41 chr3 129903805 129904370 -97620208 - L1M4 LINE L1 -2694 3452 2865 2070 112 0 7 chr3 129904667 129904991 -97619587 - AluSx SINE Alu 0 322 1 360 340 10 47 chr3 129906473 129906702 -97617876 + MIR SINE MIR 28 247 -15 281 290 152 22 chr3 129906979 129907117 -97617461 + MIR SINE MIR 4 159 -103 505 282 14 30 chr3 129908415 129908593 -97615985 + MIR3 SINE MIR 4 181 -27 253 252 139 43 chr3 129908619 129908734 -97615844 - MIR SINE MIR 0 262 137 314 314 48 8 chr3 129909827 129909951 -97614627 + L3b LINE CR1 1310 1438 -145 264 100 0 0 chr3 129910939 129910979 -97613599 + (TG)n Simple_repeat Simple_repeat 1 40 0 23 0 0 0 chr3 129911504 129911527 -97613051 + AT_rich Low_complexity Low_complexity 1 23 0 995 132 6 0 chr3 129911611 129911785 -97612793 + (TTCC)n Simple_repeat Simple_repeat 4 178 0 306 233 0 0 chr3 129911791 129911877 -97612701 + CT-rich Low_complexity Low_complexity 2 87 0 189 0 0 0 chr3 129911997 129912018 -97612560 + (T)n Simple_repeat Simple_repeat 1 21 0 2287 79 3 3 chr3 129912454 129912746 -97611832 + AluSc SINE Alu 1 292 -17 1001 305 112 5 chr3 129913455 129913839 -97610739 + L2 LINE L2 2887 3311 -2 368 20 20 0 chr3 129914098 129914147 -97610431 + (CA)n Simple_repeat Simple_repeat 2 51 0 193 321 104 37 chr3 129914604 129914738 -97609840 - MIR SINE MIR -46 216 74 250 267 0 0 chr3 129914951 129915011 -97609567 - MIR SINE MIR 0 262 203 337 287 28 9 chr3 129915035 129915143 -97609435 + L2 LINE L2 3204 3313 0 349 236 0 0 chr3 129915327 129915399 -97609179 - L2 LINE L2 -1 3312 3241 516 276 90 0 chr3 129918276 129918421 -97606157 - MIR SINE MIR -102 160 3 455 318 16 0 chr3 129918439 129918568 -97606010 + MIR SINE MIR 6 136 -126 784 297 59 8 chr3 129918571 129918810 -97605768 - MIR SINE MIR 0 262 12 1635 212 48 84 chr3 129918892 129919416 -97605162 + MLT2B1 LTR ERVL 1 505 -15 1782 143 4 0 chr3 129919893 129920158 -97604420 - AluSx SINE Alu -43 269 4 22 0 0 0 chr3 129920884 129920906 -97603672 + AT_rich Low_complexity Low_complexity 1 22 0 201 292 83 0 chr3 129924053 129924125 -97600453 - MIR SINE MIR -85 123 46 209 296 143 20 chr3 129925137 129925235 -97599343 - MIR SINE MIR -132 130 21 233 221 15 59 chr3 129925428 129925496 -97599082 - MIR3 SINE MIR -30 178 114 339 207 18 126 chr3 129925604 129925715 -97598863 + L2 LINE L2 3198 3296 -17 186 43 0 0 chr3 129927666 129927689 -97596889 + (TAA)n Simple_repeat Simple_repeat 2 24 0 307 247 0 72 chr3 129928124 129928221 -97596357 + MIR SINE MIR 77 166 -96 1577 179 7 29 chr3 129928384 129928562 -97596016 + AluJo SINE Alu 7 177 -135 1445 77 48 5 chr3 129928562 129928771 -97595807 - L1PB1 LINE L1 -1 6150 5933 1577 179 7 29 chr3 129928771 129928899 -97595679 + AluJo SINE Alu 177 306 -6 268 252 57 57 chr3 129929642 129929765 -97594813 - L2 LINE L2 0 3313 3191 21 36 0 0 chr3 129930108 129930136 -97594442 + AT_rich Low_complexity Low_complexity 1 28 0 186 43 0 0 chr3 129931058 129931081 -97593497 + (A)n Simple_repeat Simple_repeat 1 23 0 23 33 0 0 chr3 129932455 129932485 -97592093 + AT_rich Low_complexity Low_complexity 1 30 0 727 277 73 22 chr3 129932925 129933293 -97591285 + L1ME4a LINE L1 5497 5883 -238 266 214 30 69 chr3 129933345 129933476 -97591102 + L1ME4a LINE L1 5984 6109 -12 22 35 0 0 chr3 129933479 129933508 -97591070 + AT_rich Low_complexity Low_complexity 1 29 0 26 0 0 0 chr3 129934053 129934079 -97590499 + AT_rich Low_complexity Low_complexity 1 26 0 578 304 97 35 chr3 129934555 129935092 -97589486 + L1MC4a LINE L1 5260 5829 -1979 274 304 17 70 chr3 129935483 129935598 -97588980 + MIR3 SINE MIR 96 204 -4 2814 13 0 0 chr3 129936409 129936720 -97587858 - AluYa5 SINE Alu 0 311 1 256 287 46 23 chr3 129937787 129937874 -97586704 + L2 LINE L2 2977 3065 -248 188 321 99 12 chr3 129938679 129938760 -97585818 + MIR SINE MIR 37 124 -84 2237 156 62 0 chr3 129939369 129939772 -97584806 - MSTC LTR MaLR 0 428 1 1520 210 69 47 chr3 129939831 129940283 -97584295 + MLT1C LTR MaLR 6 467 0 210 143 0 0 chr3 129940588 129940623 -97583955 + (A)n Simple_repeat Simple_repeat 1 35 0 1604 142 36 29 chr3 129940629 129940904 -97583674 + AluJb SINE Alu 1 277 -35 29 78 0 0 chr3 129941528 129941592 -97582986 + AT_rich Low_complexity Low_complexity 1 64 0 326 368 32 7 chr3 129942464 129942619 -97581959 - MIR SINE MIR -103 159 1 2393 70 3 0 chr3 129942941 129943256 -97581322 + L1PA5 LINE L1 5839 6154 0 182 365 19 0 chr3 129943280 129943332 -97581246 - L2 LINE L2 -103 3169 3117 396 309 34 0 chr3 129943578 129943727 -97580851 + MER117 DNA MER1_type 6 159 -38 2134 99 7 3 chr3 129944258 129944552 -97580026 + AluSx SINE Alu 1 295 -17 198 0 0 0 chr3 129946521 129946543 -97578035 + (CAA)n Simple_repeat Simple_repeat 3 24 0 567 270 22 7 chr3 129946631 129946768 -97577810 + MIR SINE MIR 48 186 -76 256 234 21 0 chr3 129946774 129946868 -97577710 + (TA)n Simple_repeat Simple_repeat 2 97 0 183 319 0 0 chr3 129946868 129946915 -97577663 + MIR SINE MIR 216 262 0 1387 149 35 141 chr3 129946927 129947330 -97577248 + MLT1B LTR MaLR 5 364 -26 22 0 0 0 chr3 129948160 129948182 -97576396 + AT_rich Low_complexity Low_complexity 1 22 0 290 365 26 26 chr3 129948259 129948415 -97576163 - MIR SINE MIR -50 212 57 2821 190 5 19 chr3 129948700 129949290 -97575288 + L1MB3 LINE L1 5602 6183 0 603 309 64 0 chr3 129949537 129949725 -97574853 - MIR SINE MIR -4 258 59 253 340 160 0 chr3 129949730 129949836 -97574742 + L2 LINE L2 3125 3247 -25 214 222 74 0 chr3 129950770 129950824 -97573754 + MIR SINE MIR 94 151 -111 290 222 63 0 chr3 129951095 129951158 -97573420 - L2 LINE L2 0 3272 3206 21 36 0 0 chr3 129951405 129951433 -97573145 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr3 129953017 129953046 -97571532 + (CA)n Simple_repeat Simple_repeat 2 30 0 747 179 45 19 chr3 129953620 129953776 -97570802 + FRAM SINE Alu 1 160 -6 515 288 113 16 chr3 129953927 129954236 -97570342 + L1ME4a LINE L1 5520 5858 -263 329 214 121 7 chr3 129954318 129954458 -97570120 + L1ME4a LINE L1 5964 6119 -2 289 286 67 42 chr3 129954783 129954902 -97569676 - L2 LINE L2 0 3272 3151 452 321 128 18 chr3 129955631 129955849 -97568729 + MIR SINE MIR 7 248 -14 234 0 0 0 chr3 129956614 129956640 -97567938 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 25 0 0 0 chr3 129956973 129956998 -97567580 + AT_rich Low_complexity Low_complexity 1 25 0 26 50 0 0 chr3 129957730 129957770 -97566808 + AT_rich Low_complexity Low_complexity 1 40 0 287 353 219 25 chr3 129957833 129958071 -97566507 + L2 LINE L2 2986 3269 -3 546 289 39 43 chr3 129958473 129958681 -97565897 + L2 LINE L2 3105 3311 -2 235 257 0 14 chr3 129958973 129959047 -97565531 + MIR SINE MIR 73 145 -117 43 20 0 0 chr3 129959050 129959100 -97565478 + AT_rich Low_complexity Low_complexity 1 50 0 230 374 60 0 chr3 129960060 129960226 -97564352 + L2 LINE L2 3123 3298 -15 806 270 81 47 chr3 129960227 129960586 -97563992 - L2 LINE L2 0 3313 2943 261 277 82 50 chr3 129960983 129961142 -97563436 + L1MEd LINE L1 588 751 -5368 291 256 124 68 chr3 129961189 129961544 -97563034 + L1MEd LINE L1 835 1209 -4910 3602 125 241 1 chr3 129961559 129962270 -97562308 + Tigger3(Golem) DNA MER2_type 2148 3028 -1 287 266 107 31 chr3 129962270 129962559 -97562019 + L1MEd LINE L1 2939 3249 -2880 348 127 0 0 chr3 129962777 129962832 -97561746 + (CA)n Simple_repeat Simple_repeat 2 56 0 29 0 0 0 chr3 129962843 129962872 -97561706 + AT_rich Low_complexity Low_complexity 1 29 0 285 253 44 0 chr3 129962914 129963005 -97561573 + L1MEd LINE L1 3587 3681 -2448 399 311 140 25 chr3 129963069 129963304 -97561274 - MIR SINE MIR 0 262 1 334 272 105 43 chr3 129963385 129963547 -97561031 - L1M4c LINE L1 -4929 1455 1284 806 279 5 9 chr3 129963559 129963778 -97560800 + L1M3a LINE L1 832 1049 -5720 386 292 81 31 chr3 129963787 129963948 -97560630 + L1M3a LINE L1 1095 1263 -5506 * 2051 275 32 18 chr3 129963946 129964858 -97559720 + L1M3a LINE L1 1764 2688 -4161 13776 172 31 14 chr3 129964966 129968867 -97555711 - L1MA3 LINE L1 -1 7723 3753 15793 154 32 5 chr3 129968975 129971568 -97553010 - L1MA3 LINE L1 -4493 3072 410 7601 206 59 50 chr3 129971641 129971927 -97552651 + L1M4c LINE L1 2019 2301 -4081 2178 112 3 0 chr3 129971927 129972221 -97552357 + AluSg SINE Alu 1 295 -15 7601 206 59 50 chr3 129972221 129973631 -97550947 + L1M4c LINE L1 2301 3696 -2686 2035 151 0 0 chr3 129973631 129973923 -97550655 - AluSx SINE Alu -19 293 2 7601 206 59 50 chr3 129973923 129974096 -97550482 + L1M4c LINE L1 3696 3866 -2516 2315 30 0 0 chr3 129974096 129974367 -97550211 + L1PA5 LINE L1 5873 6143 -11 7601 206 59 50 chr3 129974367 129975061 -97549517 + L1M4c LINE L1 3866 4617 -1765 1953 180 77 3 chr3 129975062 129975456 -97549122 - MSTB1 LTR MaLR -2 399 4 4633 175 37 23 chr3 129975456 129977243 -97547335 + L1MA9 LINE L1 4609 6526 -22 30 0 0 0 chr3 129977243 129977273 -97547305 + AT_rich Low_complexity Low_complexity 1 30 0 1770 249 60 95 chr3 129977282 129977468 -97547110 - L1ME LINE L1 -5036 1034 843 2385 95 3 0 chr3 129977468 129977774 -97546804 - AluSc SINE Alu -2 307 1 1770 249 60 95 chr3 129977774 129978015 -97546563 - L1ME LINE L1 -5227 843 595 2292 99 3 0 chr3 129978015 129978319 -97546259 - AluY SINE Alu -6 305 1 1770 249 60 95 chr3 129978319 129978961 -97545617 - L1ME LINE L1 -5475 595 2 1265 149 110 26 chr3 129979288 129979516 -97545062 - AluJo SINE Alu -43 269 23 673 92 10 10 chr3 129979516 129979614 -97544964 + MER4A LTR ERV1 1 98 -566 1742 126 8 76 chr3 129979614 129979983 -97544595 + MER4A LTR ERV1 261 664 0 473 289 59 0 chr3 129980507 129980642 -97543936 + MIR3 SINE MIR 65 207 -1 230 330 37 58 chr3 129981414 129981605 -97542973 - L2 LINE L2 -3 3310 3124 230 0 33 0 chr3 129982587 129982617 -97541961 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 382 284 10 0 chr3 129985143 129985245 -97539333 - LTR16C LTR ERVL -26 465 363 1014 277 59 50 chr3 129985299 129985757 -97538821 + MLT1H LTR MaLR 75 536 -13 835 301 48 27 chr3 129985756 129986048 -97538530 - LTR16C LTR ERVL -104 387 90 * 409 367 49 23 chr3 129986121 129986429 -97538149 + L2 LINE L2 1109 1424 -1890 269 250 7 125 chr3 129986657 129986809 -97537769 + L2 LINE L2 2923 3056 -216 180 361 134 0 chr3 129986914 129987011 -97537567 + L2 LINE L2 3144 3253 -19 22 0 0 0 chr3 129987017 129987039 -97537539 + AT_rich Low_complexity Low_complexity 1 22 0 225 226 0 0 chr3 129988748 129988801 -97535777 + (CATG)n Simple_repeat Simple_repeat 2 54 0 21 71 0 0 chr3 129989034 129989076 -97535502 + AT_rich Low_complexity Low_complexity 1 42 0 312 318 61 8 chr3 129989104 129989236 -97535342 + L1ME LINE L1 5361 5499 -622 590 280 84 5 chr3 129989312 129989526 -97535052 - LTR16B LTR ERVL 0 464 234 3449 71 1 64 chr3 129989526 129989915 -97534663 - L1P3 LINE L1 -414 5740 5328 1099 352 3 62 chr3 129989915 129990236 -97534342 - AluSx SINE Alu 0 302 1 3449 71 1 64 chr3 129990236 129990331 -97534247 - L1P3 LINE L1 -826 5328 5229 2068 86 0 64 chr3 129990331 129990657 -97533921 + AluY SINE Alu 1 305 -6 3449 71 1 64 chr3 129990657 129990950 -97533628 - L1P3 LINE L1 -925 5229 4994 3218 49 2 2 chr3 129990950 129991348 -97533230 + L1PA7 LINE L1 5744 6151 -3 437 82 0 0 chr3 129991362 129991423 -97533155 - MER2 DNA MER2_type -84 261 201 789 326 0 5 chr3 129991426 129991644 -97532934 - LTR16B LTR ERVL -213 251 35 401 250 12 76 chr3 129991693 129991865 -97532713 + L1ME LINE L1 5629 5789 -332 669 223 6 19 chr3 129992236 129992393 -97532185 + FRAM SINE Alu 2 156 -20 204 259 45 107 chr3 129992602 129992714 -97531864 - L2 LINE L2 0 3272 3168 23 54 0 0 chr3 129993527 129993564 -97531014 + AT_rich Low_complexity Low_complexity 1 37 0 193 346 59 59 chr3 129993776 129993877 -97530701 - MIR SINE MIR -71 191 91 735 288 69 46 chr3 129995862 129996630 -97527948 + L1ME3A LINE L1 810 1595 -4801 5407 166 28 10 chr3 129996630 129997633 -97526945 + L1MA7 LINE L1 5271 6291 0 352 318 47 17 chr3 129997662 129997898 -97526680 + L1ME3A LINE L1 1578 1820 -4576 1428 277 76 32 chr3 129998037 129998915 -97525663 + L1ME3A LINE L1 2060 2941 -3274 563 260 40 55 chr3 129998906 129999233 -97525345 + L1ME3A LINE L1 3238 3559 -2656 * 4865 174 15 4 chr3 129999251 130000326 -97524252 + L1PB4 LINE L1 5068 6155 -1 2480 270 74 57 chr3 130000333 130001152 -97523426 + L1ME3A LINE L1 3564 4367 -1864 207 0 0 0 chr3 130001152 130001175 -97523403 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 2480 270 74 57 chr3 130001175 130002001 -97522577 + L1ME3A LINE L1 4367 5257 -974 2215 112 3 0 chr3 130002001 130002297 -97522281 + AluSx SINE Alu 1 297 -15 2480 270 74 57 chr3 130002297 130002651 -97521927 + L1ME3A LINE L1 5257 5603 -628 1095 115 32 202 chr3 130002651 130003068 -97521510 - Tigger7 DNA MER2_type 0 2587 7 1794 221 57 49 chr3 130003083 130003675 -97520903 + L1ME3A LINE L1 5605 6201 -38 1741 278 103 29 chr3 130004081 130004646 -97519932 + L1MDb LINE L1 789 1311 -5095 1205 231 117 19 chr3 130004646 130005005 -97519573 + MSTD LTR MaLR 1 394 -2 1741 278 103 29 chr3 130005005 130006312 -97518266 + L1MDb LINE L1 1311 2830 -3576 192 77 0 0 chr3 130006992 130007018 -97517560 + (CA)n Simple_repeat Simple_repeat 2 27 0 261 279 96 10 chr3 130009739 130009843 -97514735 - MER112 DNA MER1_type 0 260 148 256 254 0 0 chr3 130009843 130009898 -97514680 + (ATAGG)n Simple_repeat Simple_repeat 5 59 0 276 283 118 24 chr3 130010060 130010243 -97514335 - MER20 DNA MER1_type 0 219 18 2101 127 3 13 chr3 130011081 130011395 -97513183 + AluSx SINE Alu 1 311 -1 383 137 14 0 chr3 130012279 130012352 -97512226 + (CA)n Simple_repeat Simple_repeat 2 75 0 192 341 0 37 chr3 130012750 130012832 -97511746 + L3 LINE CR1 421 499 -1078 254 185 65 5 chr3 130013011 130013095 -97511483 - MIR SINE MIR -33 175 86 350 291 12 30 chr3 130013421 130013586 -97510992 - L2 LINE L2 -1208 2106 1945 230 270 260 0 chr3 130016608 130016708 -97507870 - L2 LINE L2 -8 3305 3180 2064 137 0 10 chr3 130016731 130017045 -97507533 + AluSx SINE Alu 1 311 -1 2110 152 93 1 chr3 130017808 130018283 -97506295 - L1MA8 LINE L1 0 6291 5745 1571 99 6 0 chr3 130018284 130018583 -97505995 - L1MA8 LINE L1 -743 5403 5175 462 281 62 52 chr3 130019031 130019241 -97505337 - MIR SINE MIR -3 259 48 30 69 0 0 chr3 130019405 130019463 -97505115 + AT_rich Low_complexity Low_complexity 1 58 0 2285 98 0 0 chr3 130020273 130020569 -97504009 + AluSx SINE Alu 1 296 -16 33 66 0 0 chr3 130020867 130020928 -97503650 + AT_rich Low_complexity Low_complexity 1 61 0 256 313 94 10 chr3 130021400 130021496 -97503082 + MIR SINE MIR 100 203 -59 187 360 48 0 chr3 130021537 130021662 -97502916 + L2 LINE L2 1527 1657 -1657 546 277 38 17 chr3 130021930 130022188 -97502390 - L1ME4a LINE L1 -222 5899 5634 325 255 75 43 chr3 130022371 130022532 -97502046 + L2 LINE L2 2144 2309 -1005 22 0 0 0 chr3 130022827 130022849 -97501729 + AT_rich Low_complexity Low_complexity 1 22 0 915 183 139 8 chr3 130022907 130023159 -97501419 - L1MA8 LINE L1 -10 6281 5997 1049 177 71 23 chr3 130023291 130023557 -97501021 + MER33 DNA MER1_type 37 315 -9 23 33 0 0 chr3 130023606 130023636 -97500942 + AT_rich Low_complexity Low_complexity 1 30 0 313 314 97 26 chr3 130023721 130023947 -97500631 + L1ME4a LINE L1 3895 4136 -2010 231 36 0 0 chr3 130024046 130024074 -97500504 + (CA)n Simple_repeat Simple_repeat 2 29 0 433 274 69 77 chr3 130024085 130024990 -97499588 + L1ME4a LINE L1 4353 5251 -895 296 324 14 14 chr3 130024978 130025117 -97499461 + L1ME4a LINE L1 5788 5926 -195 * 477 363 37 58 chr3 130025144 130025521 -97499057 + L2 LINE L2 2896 3264 -8 2585 242 54 30 chr3 130027525 130028471 -97496107 + L1 LINE L1 2640 3608 -2538 1706 60 38 17 chr3 130028445 130028680 -97495898 + L1M1 LINE L1 5584 5823 -479 * 3751 81 4 8 chr3 130028891 130029412 -97495166 + L1PA13 LINE L1 5644 6162 -1 302 324 68 45 chr3 130029954 130030130 -97494448 + L2 LINE L2 3092 3271 -1 247 282 27 73 chr3 130031336 130031446 -97493132 + L2 LINE L2 3204 3308 -5 259 250 200 0 chr3 130031456 130031576 -97493002 - MARNA DNA Mariner -50 536 393 522 259 109 50 chr3 130031818 130032038 -97492540 + MARNA DNA Mariner 294 526 -60 42 57 0 0 chr3 130032098 130032168 -97492410 + AT_rich Low_complexity Low_complexity 1 70 0 29 0 0 0 chr3 130032467 130032496 -97492082 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr3 130032779 130032804 -97491774 + AT_rich Low_complexity Low_complexity 1 25 0 363 305 65 13 chr3 130036478 130036632 -97487946 + L2 LINE L2 3147 3308 -5 4246 138 6 3 chr3 130036848 130037530 -97487048 - L1PA10 LINE L1 -1535 4611 3928 * 6573 100 11 1 chr3 130037525 130039044 -97485534 + L1PA10 LINE L1 4639 6168 0 451 327 20 7 chr3 130040252 130040402 -97484176 + L2 LINE L2 3161 3312 -1 2323 68 7 0 chr3 130041902 130042195 -97482383 + AluY SINE Alu 1 295 -16 204 111 0 0 chr3 130044018 130044054 -97480524 + (CA)n Simple_repeat Simple_repeat 1 36 0 273 317 94 70 chr3 130046611 130046939 -97477639 + L3 LINE CR1 903 1238 -339 568 269 41 12 chr3 130046961 130047132 -97477446 + L2 LINE L2 3138 3313 0 374 281 71 54 chr3 130047286 130047510 -97477068 - L2 LINE L2 -115 3198 2971 2186 101 3 3 chr3 130047512 130047810 -97476768 + AluSq SINE Alu 1 298 -15 181 354 21 76 chr3 130048301 130048445 -97476133 + L2 LINE L2 3126 3261 -11 366 362 73 40 chr3 130048676 130048982 -97475596 + L1ME4a LINE L1 4865 5194 -952 1451 139 0 5 chr3 130048982 130049198 -97475380 + AluJb SINE Alu 87 301 -11 366 362 73 40 chr3 130049198 130049369 -97475209 + L1ME4a LINE L1 5194 5358 -788 62 52 0 0 chr3 130049399 130049496 -97475082 + AT_rich Low_complexity Low_complexity 1 97 0 302 226 108 137 chr3 130049502 130049836 -97474742 + L1ME4a LINE L1 5650 5967 -154 207 69 0 0 chr3 130049836 130049865 -97474713 + (TG)n Simple_repeat Simple_repeat 1 29 0 302 226 108 137 chr3 130049865 130050013 -97474565 + L1ME4a LINE L1 5967 6118 -3 22 0 0 0 chr3 130050050 130050072 -97474506 + AT_rich Low_complexity Low_complexity 1 22 0 204 316 0 13 chr3 130050155 130050234 -97474344 + GA-rich Low_complexity Low_complexity 3 80 0 21 0 0 0 chr3 130051870 130051891 -97472687 + AT_rich Low_complexity Low_complexity 1 21 0 903 274 16 8 chr3 130052734 130052986 -97471592 - MIR SINE MIR -1 261 8 207 319 11 33 chr3 130053549 130053640 -97470938 - L3 LINE CR1 -1158 419 331 26 0 0 0 chr3 130053680 130053706 -97470872 + AT_rich Low_complexity Low_complexity 1 26 0 626 98 0 11 chr3 130053851 130053943 -97470635 - L1PA5 LINE L1 -23 6131 6041 183 264 38 0 chr3 130054331 130054384 -97470194 - L2 LINE L2 0 3313 3259 750 93 0 0 chr3 130055430 130055538 -97469040 - L1PA3 LINE L1 -6 6149 6042 605 270 161 36 chr3 130056038 130056430 -97468148 + L2 LINE L2 2873 3313 0 942 206 16 22 chr3 130056997 130057181 -97467397 - MER58A DNA MER1_type -14 210 28 7391 35 0 0 chr3 130059265 130060252 -97464326 - L1PA5 LINE L1 0 6154 5172 184 237 85 136 chr3 130060632 130060750 -97463828 + L2 LINE L2 3190 3301 -12 4666 111 58 20 chr3 130060761 130061403 -97463175 - L1MA3 LINE L1 0 6305 5624 225 0 0 0 chr3 130061403 130061428 -97463150 + (CA)n Simple_repeat Simple_repeat 2 26 0 4666 111 58 20 chr3 130061428 130061598 -97462980 - L1MA3 LINE L1 -681 5624 5462 12929 166 26 14 chr3 130061611 130065178 -97459400 - L1 LINE L1 -2458 5107 1492 1735 175 89 24 chr3 130065388 130065760 -97458818 - MSTD LTR MaLR 0 396 1 381 314 194 9 chr3 130066134 130066532 -97458046 + L1MC/D LINE L1 5180 5661 -748 205 315 63 42 chr3 130066670 130066813 -97457765 + MIR3 SINE MIR 46 191 -17 707 331 94 56 chr3 130066990 130067845 -97456733 - L2 LINE L2 -832 2482 1596 236 329 143 14 chr3 130068547 130068687 -97455891 + L3 LINE CR1 1400 1557 -20 189 0 0 0 chr3 130068855 130068876 -97455702 + (TA)n Simple_repeat Simple_repeat 2 22 0 300 232 179 21 chr3 130068945 130069040 -97455538 - L2 LINE L2 -1 3312 3203 195 42 0 0 chr3 130069073 130069097 -97455481 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 380 328 196 26 chr3 130069346 130069657 -97454921 - L2 LINE L2 -408 2906 2543 237 307 136 34 chr3 130069655 130069831 -97454747 + MIR SINE MIR 66 259 -3 * 208 250 13 13 chr3 130069998 130070074 -97454504 + (CATATA)n Simple_repeat Simple_repeat 3 78 0 231 88 0 0 chr3 130070309 130070343 -97454235 + (CA)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr3 130071346 130071368 -97453210 + AT_rich Low_complexity Low_complexity 1 22 0 221 0 0 33 chr3 130071639 130071669 -97452909 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 562 252 17 0 chr3 130071673 130071788 -97452790 - FLAM_A SINE Alu -16 117 1 4621 203 83 4 chr3 130071854 130071888 -97452690 - L1MC2 LINE L1 -13 6314 6284 202 29 57 0 chr3 130071888 130071923 -97452655 + (CAAA)n Simple_repeat Simple_repeat 4 40 0 4621 203 83 4 chr3 130071923 130073765 -97450813 - L1MC2 LINE L1 -43 6284 4294 22 0 0 0 chr3 130074913 130074935 -97449643 + AT_rich Low_complexity Low_complexity 1 22 0 26 53 4 0 chr3 130074972 130075059 -97449519 + AT_rich Low_complexity Low_complexity 1 54 0 180 200 0 0 chr3 130075958 130076003 -97448575 + CT-rich Low_complexity Low_complexity 4 48 0 506 103 39 65 chr3 130076028 130076183 -97448395 + CT-rich Low_complexity Low_complexity 2 152 0 437 358 108 28 chr3 130076196 130076955 -97447623 + L2 LINE L2 1985 2804 -510 757 233 99 48 chr3 130076956 130077269 -97447309 + L1MD2 LINE L1 6024 6352 -7 399 133 40 0 chr3 130077261 130077336 -97447242 + L1MA9 LINE L1 6192 6269 -43 * 512 175 95 29 chr3 130077940 130078077 -97446501 - L1MB7 LINE L1 -33 6151 6006 232 333 20 0 chr3 130078125 130078227 -97446351 - L3 LINE CR1 -294 1283 1180 2463 58 0 0 chr3 130078247 130078556 -97446022 - L1PA7 LINE L1 -556 5598 5290 4348 58 0 28 chr3 130078556 130079127 -97445451 + L1PA7 LINE L1 5597 6152 -2 2316 234 29 13 chr3 130080344 130080895 -97443683 + MER119 DNA MER1_type 1 560 -23 1297 244 68 75 chr3 130080970 130081976 -97442602 - L1MC2 LINE L1 -2579 3550 2552 614 343 107 7 chr3 130081981 130082281 -97442297 + L2 LINE L2 2983 3312 -1 531 322 117 75 chr3 130082340 130082846 -97441732 - L1MC2 LINE L1 -5463 656 130 23028 44 2 1 chr3 130083332 130086224 -97438354 + L1P LINE L1 2248 5141 -1005 4468 202 48 20 chr3 130086324 130087463 -97437115 + L1MB3 LINE L1 4306 5513 -670 243 0 0 0 chr3 130087463 130087490 -97437088 + (CA)n Simple_repeat Simple_repeat 2 28 0 4468 202 48 20 chr3 130087490 130088179 -97436399 + L1MB3 LINE L1 5513 6181 -2 1121 81 0 0 chr3 130088211 130088359 -97436219 - AluSc SINE Alu -4 305 158 2190 70 0 0 chr3 130088359 130088631 -97435947 - AluSc SINE Alu -37 272 1 21 0 0 0 chr3 130088972 130088993 -97435585 + AT_rich Low_complexity Low_complexity 1 21 0 1919 114 7 4 chr3 130089221 130089492 -97435086 - AluSx SINE Alu -30 282 11 22 0 0 0 chr3 130089786 130089808 -97434770 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr3 130090664 130090695 -97433883 + AT_rich Low_complexity Low_complexity 1 31 0 706 293 142 41 chr3 130090965 130091457 -97433121 + L3 LINE CR1 930 1471 -106 1432 144 26 92 chr3 130091684 130092030 -97432548 + L1MA7 LINE L1 5967 6289 -2 746 342 71 47 chr3 130092117 130092670 -97431908 - L2 LINE L2 -2 3270 2699 229 366 93 37 chr3 130093203 130093348 -97431230 - MIR3 SINE MIR -65 143 2 1969 107 0 40 chr3 130095195 130095566 -97429012 + AluSq SINE Alu 1 359 0 2649 139 19 2 chr3 130095714 130096130 -97428448 + MSTB LTR MaLR 4 426 0 183 42 0 0 chr3 130096226 130096250 -97428328 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 381 279 39 10 chr3 130096505 130096609 -97427969 + MER5B DNA MER1_type 1 107 -71 446 293 57 0 chr3 130096673 130096813 -97427765 + MIR SINE MIR 96 243 -19 201 263 0 0 chr3 130097185 130097242 -97427336 + (TA)n Simple_repeat Simple_repeat 2 58 0 21 71 0 0 chr3 130097349 130097391 -97427187 + AT_rich Low_complexity Low_complexity 1 42 0 2454 42 0 16 chr3 130099857 130100163 -97424415 + AluY SINE Alu 1 301 -10 332 311 70 123 chr3 130100827 130101281 -97423297 + L2 LINE L2 2824 3253 -19 1477 161 181 3 chr3 130101299 130101603 -97422975 - MER46B DNA MER2_type 0 236 4 23 0 0 0 chr3 130102189 130102212 -97422366 + AT_rich Low_complexity Low_complexity 1 23 0 31 26 0 0 chr3 130102444 130102482 -97422096 + AT_rich Low_complexity Low_complexity 1 38 0 215 397 53 23 chr3 130103088 130103219 -97421359 - L2 LINE L2 -22 3250 3116 1687 161 161 13 chr3 130103651 130104024 -97420554 - MSTA LTR MaLR 0 428 1 1920 148 0 0 chr3 130104100 130104390 -97420188 + AluSg SINE Alu 6 295 -15 21 71 0 0 chr3 130104808 130104850 -97419728 + AT_rich Low_complexity Low_complexity 1 42 0 186 43 0 0 chr3 130105218 130105241 -97419337 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 260 402 8 8 chr3 130106318 130106435 -97418143 - MIR SINE MIR -55 153 37 342 0 0 0 chr3 130107107 130107145 -97417433 + (TC)n Simple_repeat Simple_repeat 1 38 0 1344 220 163 0 chr3 130107151 130107464 -97417114 + MLT1F1 LTR MaLR 203 566 -1 263 256 120 45 chr3 130107495 130107628 -97416950 + MIR SINE MIR 120 262 0 367 286 120 26 chr3 130107731 130108039 -97416539 + L1ME LINE L1 4973 5309 -837 285 283 204 31 chr3 130108084 130108399 -97416179 + L1ME LINE L1 5317 5686 -435 3635 268 79 42 chr3 130109105 130109752 -97414826 - L1MEc LINE L1 -4142 2254 1633 2688 82 22 3 chr3 130109752 130110120 -97414458 - THE1C LTR MaLR 0 375 1 3635 268 79 42 chr3 130110120 130110366 -97414212 - L1MEc LINE L1 -4763 1633 1398 1931 129 4 0 chr3 130110366 130110644 -97413934 + AluSx SINE Alu 1 279 -33 3635 268 79 42 chr3 130110644 130111709 -97412869 - L1MEc LINE L1 -4998 1398 222 190 298 39 58 chr3 130111878 130111982 -97412596 - L3 LINE CR1 -861 716 615 286 304 113 24 chr3 130112083 130112251 -97412327 + MIR SINE MIR 18 200 -62 217 343 57 0 chr3 130112280 130112385 -97412193 + L2 LINE L2 2957 3067 -205 540 290 164 13 chr3 130112652 130112890 -97411688 - L3 LINE CR1 -1117 460 187 287 321 119 6 chr3 130112979 130113147 -97411431 + MIR SINE MIR 21 207 -55 227 343 14 55 chr3 130113195 130113341 -97411237 + MIR SINE MIR 123 262 0 322 133 0 133 chr3 130115155 130115245 -97409333 - MLT1A2 LTR MaLR -11 363 286 498 181 0 0 chr3 130115345 130115428 -97409150 - MLT1A2 LTR MaLR -291 83 1 372 22 0 0 chr3 130115480 130115525 -97409053 + (CA)n Simple_repeat Simple_repeat 2 46 0 421 194 74 0 chr3 130115607 130115715 -97408863 - HAL1 LINE L1 -149 2358 2243 2086 264 107 36 chr3 130115904 130116268 -97408310 - HAL1 LINE L1 -564 1943 1606 2233 99 10 13 chr3 130116268 130116580 -97407998 - AluSq SINE Alu -2 311 1 2086 264 107 36 chr3 130116580 130117132 -97407446 - HAL1 LINE L1 -901 1606 962 269 297 141 50 chr3 130117153 130117436 -97407142 - HAL1 LINE L1 -2198 309 1 450 305 7 24 chr3 130117494 130117647 -97406931 - MIR3 SINE MIR -3 205 54 466 325 54 66 chr3 130118066 130118565 -97406013 + L2 LINE L2 2372 2864 -450 27 29 0 0 chr3 130118751 130118785 -97405793 + AT_rich Low_complexity Low_complexity 1 34 0 206 353 84 25 chr3 130118973 130119092 -97405486 + L2 LINE L2 3147 3272 0 351 269 58 88 chr3 130121599 130121770 -97402808 - MIR SINE MIR -1 261 96 28 48 0 0 chr3 130122628 130122670 -97401908 + AT_rich Low_complexity Low_complexity 1 42 0 399 319 12 31 chr3 130122730 130122893 -97401685 + MIR SINE MIR 48 207 -55 182 235 0 0 chr3 130124171 130124205 -97400373 + MIR SINE MIR 7 40 -222 476 295 82 6 chr3 130124689 130124872 -97399706 + MIR SINE MIR 65 261 -1 26 0 0 0 chr3 130125555 130125581 -97398997 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 130125624 130125645 -97398933 + AT_rich Low_complexity Low_complexity 1 21 0 238 322 34 51 chr3 130126126 130126244 -97398334 - L2 LINE L2 -19 3253 3138 727 286 26 4 chr3 130126368 130126599 -97397979 + L1MEc LINE L1 39 274 -6122 22 0 0 0 chr3 130126876 130126898 -97397680 + AT_rich Low_complexity Low_complexity 1 22 0 2616 138 74 30 chr3 130126932 130127433 -97397145 - L1MB1 LINE L1 -1 6167 5645 4861 190 99 5 chr3 130127433 130128608 -97395970 + L1M3 LINE L1 3960 5244 -902 1929 167 24 12 chr3 130128608 130128937 -97395641 - MER1B DNA MER1_type 0 339 7 1944 188 16 49 chr3 130128972 130129066 -97395512 + L1M3 LINE L1 5254 5350 -818 1529 185 87 3 chr3 130129066 130129401 -97395177 + MLT1A1 LTR MaLR 1 363 -2 1944 188 16 49 chr3 130129401 130129758 -97394820 + L1M3 LINE L1 5350 5690 -478 814 262 48 0 chr3 130129758 130129964 -97394614 - MIR SINE MIR -39 223 8 189 0 0 0 chr3 130130423 130130444 -97394134 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 225 0 0 0 chr3 130130443 130130468 -97394110 + (TA)n Simple_repeat Simple_repeat 2 26 0 260 323 20 10 chr3 130130564 130130663 -97393915 - MIR SINE MIR -3 259 160 2014 108 0 17 chr3 130131207 130131525 -97393053 - AluSx SINE Alu 0 313 1 195 42 0 0 chr3 130131679 130131703 -97392875 + (CATTA)n Simple_repeat Simple_repeat 2 25 0 257 252 99 0 chr3 130131719 130131830 -97392748 - MIR SINE MIR -17 245 124 1177 212 85 14 chr3 130131839 130132122 -97392456 + MLT1A2 LTR MaLR 1 303 -71 226 270 0 0 chr3 130132235 130132309 -97392269 + L1M4 LINE L1 4273 4346 -1800 208 159 0 23 chr3 130132346 130132390 -97392188 + (TAAG)n Simple_repeat Simple_repeat 3 45 0 360 321 23 49 chr3 130132481 130132830 -97391748 + L1M4 LINE L1 4495 4834 -1312 23 0 0 0 chr3 130133396 130133419 -97391159 + AT_rich Low_complexity Low_complexity 1 23 0 212 0 36 0 chr3 130136799 130136827 -97387751 + (TTG)n Simple_repeat Simple_repeat 2 30 0 289 291 24 47 chr3 130139441 130139568 -97385010 + MIR SINE MIR 33 156 -106 34 24 0 0 chr3 130140425 130140466 -97384112 + AT_rich Low_complexity Low_complexity 1 41 0 416 268 63 16 chr3 130141041 130141168 -97383410 + MIR SINE MIR 37 169 -93 377 308 70 46 chr3 130141418 130141647 -97382931 + MIR SINE MIR 1 227 -35 369 303 28 79 chr3 130141840 130142018 -97382560 + MER5B DNA MER1_type 2 170 -8 309 299 131 9 chr3 130142051 130142158 -97382420 + MER5A DNA MER1_type 70 189 0 379 227 47 78 chr3 130142553 130142681 -97381897 - MIR SINE MIR -55 207 84 280 324 46 9 chr3 130143196 130143304 -97381274 - MIR3 SINE MIR -43 165 54 316 103 35 0 chr3 130143510 130143568 -97381010 + (TA)n Simple_repeat Simple_repeat 1 60 0 297 322 145 33 chr3 130143599 130143751 -97380827 - L2 LINE L2 -2 3270 3102 316 229 43 0 chr3 130144875 130144945 -97379633 - MIR SINE MIR -113 149 77 31 58 0 0 chr3 130146611 130146663 -97377915 + AT_rich Low_complexity Low_complexity 1 52 0 2042 81 0 18 chr3 130149007 130149279 -97375299 - AluSc SINE Alu -9 300 34 22 0 0 0 chr3 130151036 130151058 -97373520 + AT_rich Low_complexity Low_complexity 1 22 0 534 168 22 0 chr3 130152167 130152304 -97372274 + GA-rich Low_complexity Low_complexity 2 141 0 2106 103 10 7 chr3 130154519 130154811 -97369767 + AluSg SINE Alu 3 295 -15 6245 171 20 19 chr3 130155103 130156866 -97367712 + L1MC1 LINE L1 4564 6327 -6 300 244 22 22 chr3 130156889 130156979 -97367599 + MIR SINE MIR 52 141 -67 1006 240 52 4 chr3 130157042 130157275 -97367303 - MIR SINE MIR -18 244 1 2018 128 24 0 chr3 130157649 130157945 -97366633 - AluSx SINE Alu -7 305 3 2423 86 0 0 chr3 130158061 130158364 -97366214 - AluY SINE Alu -8 303 1 203 375 48 0 chr3 130158645 130158749 -97365829 + L2 LINE L2 3164 3272 0 1712 180 31 0 chr3 130158976 130159265 -97365313 + AluJo SINE Alu 1 298 -14 4926 93 31 0 chr3 130159287 130159988 -97364590 + L1PA8 LINE L1 5447 6169 -3 2266 88 14 7 chr3 130161759 130162056 -97362522 + AluSx SINE Alu 1 299 -13 21 71 0 0 chr3 130162400 130162442 -97362136 + AT_rich Low_complexity Low_complexity 1 42 0 2032 135 3 3 chr3 130162538 130162835 -97361743 + AluSx SINE Alu 1 297 -15 233 330 92 6 chr3 130163707 130163880 -97360698 + L1M4 LINE L1 4803 4990 -1156 309 257 9 53 chr3 130164054 130164167 -97360411 + MLT1K LTR MaLR 458 565 -23 359 294 143 22 chr3 130164251 130164508 -97360070 - L1M4 LINE L1 -1730 4416 4192 2119 131 19 27 chr3 130164508 130164875 -97359703 + THE1B LTR MaLR 1 364 0 359 294 143 22 chr3 130164875 130165219 -97359359 - L1M4 LINE L1 -1954 4192 3742 246 62 0 0 chr3 130165404 130165436 -97359142 + (T)n Simple_repeat Simple_repeat 1 32 0 407 229 161 8 chr3 130165786 130165904 -97358674 - MLT1D LTR MaLR 0 549 414 1234 151 23 28 chr3 130166110 130166328 -97358250 - MLT1D LTR MaLR -287 218 2 235 130 56 0 chr3 130167789 130167843 -97356735 + (TAAG)n Simple_repeat Simple_repeat 2 58 0 3645 134 34 5 chr3 130167858 130168471 -97356107 - MER41B LTR ERV1 -2 633 3 1928 139 74 8 chr3 130168646 130168998 -97355580 + THE1C LTR MaLR 1 375 0 10015 115 28 39 chr3 130168998 130170596 -97353982 + THE1C-int LTR MaLR 1 1580 0 2066 123 60 29 chr3 130170596 130170945 -97353633 + THE1C LTR MaLR 1 360 -15 2170 137 3 23 chr3 130170945 130171288 -97353290 + MER1B DNA MER1_type 2 337 0 2307 109 0 0 chr3 130171688 130171992 -97352586 - AluSc SINE Alu -5 304 1 526 203 145 7 chr3 130172128 130172266 -97352312 - MIR SINE MIR -2 260 104 285 250 15 0 chr3 130173177 130173245 -97351333 - MLT1K LTR MaLR 0 588 520 253 318 0 45 chr3 130173276 130173386 -97351192 - MLT1K LTR MaLR -137 451 347 233 281 62 104 chr3 130173595 130173787 -97350791 - MLT1K LTR MaLR -289 299 116 266 250 0 31 chr3 130173858 130173922 -97350656 - MLT1K LTR MaLR -289 299 238 191 346 39 39 chr3 130175383 130175487 -97349091 - L2 LINE L2 -47 3225 3122 542 272 117 56 chr3 130176814 130177174 -97347404 + MLT1H LTR MaLR 1 382 -167 2046 145 19 29 chr3 130179711 130180090 -97344488 - THE1C LTR MaLR 0 375 1 2181 122 0 13 chr3 130181058 130181369 -97343209 - AluSx SINE Alu -5 307 1 980 176 0 18 chr3 130182529 130182699 -97341879 + AluJb SINE Alu 137 303 -9 339 226 39 0 chr3 130182718 130182820 -97341758 - L1MEd LINE L1 -2227 3902 3797 21 0 0 0 chr3 130182823 130182844 -97341734 + AT_rich Low_complexity Low_complexity 1 21 0 605 274 119 61 chr3 130183102 130183279 -97341299 - L1MEd LINE L1 -2693 3436 3271 2627 147 51 45 chr3 130183279 130183830 -97340748 - L1MB7 LINE L1 -13 6171 5618 605 274 119 61 chr3 130183830 130184192 -97340386 - L1MEd LINE L1 -2858 3271 2836 353 310 97 15 chr3 130184337 130184605 -97339973 - L1MEd LINE L1 -4976 1143 854 291 359 48 0 chr3 130186291 130186394 -97338184 - L2 LINE L2 -23 3249 3142 686 270 87 21 chr3 130187151 130187392 -97337186 + MIR SINE MIR 6 262 0 220 376 30 20 chr3 130188760 130188861 -97335717 - MIR SINE MIR -86 122 21 180 0 0 0 chr3 130189175 130189195 -97335383 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 23 33 0 0 chr3 130190661 130190691 -97333887 + AT_rich Low_complexity Low_complexity 1 30 0 2112 111 10 10 chr3 130190982 130191279 -97333299 + AluSc SINE Alu 1 297 -12 614 179 15 37 chr3 130191987 130192121 -97332457 + FLAM_A SINE Alu 2 132 -1 379 250 13 0 chr3 130192591 130192667 -97331911 + L2 LINE L2 3189 3265 -48 24 32 0 0 chr3 130192802 130192833 -97331745 + AT_rich Low_complexity Low_complexity 1 31 0 1693 170 35 29 chr3 130193938 130194280 -97330298 + MER2 DNA MER2_type 1 344 0 223 226 0 54 chr3 130195534 130195627 -97328951 + (CGGGG)n Simple_repeat Simple_repeat 4 91 0 26 0 0 0 chr3 130196296 130196322 -97328256 + GC_rich Low_complexity Low_complexity 1 26 0 226 271 17 0 chr3 130196719 130196778 -97327800 + C-rich Low_complexity Low_complexity 4 63 0 1934 141 10 13 chr3 130198522 130198835 -97325743 + AluSx SINE Alu 1 312 0 1165 92 6 6 chr3 130199393 130199556 -97325022 + AluSc SINE Alu 122 284 -25 206 247 258 0 chr3 130199756 130199849 -97324729 - MIR SINE MIR -140 122 6 225 270 0 0 chr3 130200257 130200368 -97324210 + G-rich Low_complexity Low_complexity 1 111 0 203 243 0 0 chr3 130200381 130200418 -97324160 + G-rich Low_complexity Low_complexity 3 39 0 309 89 0 0 chr3 130200441 130200486 -97324092 + (GGGAA)n Simple_repeat Simple_repeat 5 49 0 2494 55 0 0 chr3 130200526 130200818 -97323760 + AluY SINE Alu 1 292 -19 277 357 79 0 chr3 130201766 130201892 -97322686 - MIR SINE MIR -43 219 84 181 216 0 0 chr3 130202003 130202040 -97322538 - L2 LINE L2 -10 3303 3267 30 66 0 13 chr3 130202445 130202467 -97322111 + AT_rich Low_complexity Low_complexity 1 22 -53 2301 99 3 0 chr3 130202467 130202771 -97321807 - AluSp SINE Alu -8 305 1 30 66 0 13 chr3 130202771 130202824 -97321754 + AT_rich Low_complexity Low_complexity 22 75 0 235 310 67 54 chr3 130203060 130203373 -97321205 - L1MC/D LINE L1 -1889 5919 5603 230 292 62 26 chr3 130203479 130203592 -97320986 - L1MC/D LINE L1 -1173 4973 4857 325 324 65 5 chr3 130203604 130203789 -97320789 - L1MC/D LINE L1 -1338 4808 4613 337 337 0 0 chr3 130204062 130204145 -97320433 + L2 LINE L2 3154 3236 -36 698 219 73 39 chr3 130204359 130204564 -97320014 - MLT1I LTR MaLR -2 407 196 1122 225 57 14 chr3 130204591 130204942 -97319636 - L1MB8 LINE L1 0 6178 5813 * 1593 180 64 35 chr3 130204934 130205586 -97318992 - L1MB8 LINE L1 -585 5599 4943 237 253 61 30 chr3 130205668 130205767 -97318811 - L1M4b LINE L1 -6022 837 736 273 274 95 32 chr3 130205816 130206006 -97318572 - L1M4b LINE L1 -6647 212 11 1262 239 78 80 chr3 130206204 130206757 -97317821 + MLT1E LTR MaLR 42 593 0 2365 184 8 10 chr3 130207140 130207635 -97316943 + L1MC3 LINE L1 7168 7661 -124 180 0 0 0 chr3 130207641 130207661 -97316917 + (TTG)n Simple_repeat Simple_repeat 2 21 0 202 241 23 46 chr3 130208118 130208205 -97316373 + G-rich Low_complexity Low_complexity 5 89 0 390 108 0 0 chr3 130208350 130208415 -97316163 + (TCCCC)n Simple_repeat Simple_repeat 5 69 0 1954 130 0 11 chr3 130208441 130208726 -97315852 - AluSx SINE Alu -30 282 1 1851 142 0 28 chr3 130208771 130209060 -97315518 + AluSx SINE Alu 2 282 -30 3513 237 69 10 chr3 130209086 130210187 -97314391 + L1MC/D LINE L1 1898 2932 -3494 2178 75 7 3 chr3 130210187 130210493 -97314085 + AluY SINE Alu 2 308 0 3513 237 69 10 chr3 130210493 130210930 -97313648 + L1MC/D LINE L1 2932 3342 -3084 186 43 0 0 chr3 130210930 130210953 -97313625 + (GAAAA)n Simple_repeat Simple_repeat 2 24 0 3513 237 69 10 chr3 130210953 130211270 -97313308 + L1MC/D LINE L1 3342 3865 -2561 7229 46 0 0 chr3 130211277 130212622 -97311956 - L1PA7 LINE L1 -2 6152 4805 12264 100 7 30 chr3 130212622 130214678 -97309900 - L1P3 LINE L1 -4406 2055 2 5408 248 31 10 chr3 130214680 130215678 -97308900 + L1MC/D LINE L1 3854 4904 -1522 3470 87 4 0 chr3 130215678 130216129 -97308449 + MLT2A2 LTR ERVL 1 453 0 5408 248 31 10 chr3 130216129 130216839 -97307739 + L1MC/D LINE L1 4904 5598 -828 1236 118 15 5 chr3 130216821 130217024 -97307554 + L1PA15 LINE L1 5721 5925 -240 * 510 65 0 13 chr3 130217023 130217100 -97307478 + L1MC/D LINE L1 5638 5713 -900 * 5158 131 38 31 chr3 130217073 130218052 -97306526 + L1MC1 LINE L1 5628 6613 0 417 141 0 0 chr3 130218093 130218164 -97306414 + THE1-int LTR MaLR 1373 1443 -137 1043 61 0 0 chr3 130218165 130218296 -97306282 + AluY SINE Alu 175 305 -6 988 97 0 7 chr3 130218296 130218450 -97306128 + MSTA-int LTR MaLR 1499 1651 0 834 93 54 0 chr3 130218450 130218577 -97306001 + MSTA LTR MaLR 1 134 -294 621 112 0 10 chr3 130218577 130218675 -97305903 + MER4A LTR ERV1 1 97 -567 379 72 18 50 chr3 130218676 130218787 -97305791 + MER4A LTR ERV1 261 426 -238 2093 105 6 0 chr3 130218787 130219112 -97305466 - pTR5 LTR ERV1 -2046 392 66 300 224 31 20 chr3 130219112 130219210 -97305368 - LTR30 LTR ERV1 -80 642 544 2607 159 60 51 chr3 130219210 130220050 -97304528 - pTR5 LTR ERV1 -413 2025 743 1487 126 4 9 chr3 130220085 130220316 -97304262 + MER4B LTR ERV1 381 610 0 2269 109 152 40 chr3 130220318 130220890 -97303688 + MER4B-int LTR ERV1 1 686 -5912 1381 237 63 14 chr3 130221050 130221413 -97303165 + MER4B-int LTR ERV1 1845 2225 -4106 6295 123 55 27 chr3 130221429 130222749 -97301829 + MER4B-int LTR ERV1 199 1650 -3365 1049 206 76 0 chr3 130222750 130222988 -97301590 - LTR8 LTR ERV1 -435 256 1 3668 129 79 37 chr3 130222988 130223890 -97300688 + MER4B-int LTR ERV1 2737 3676 -2922 2970 133 61 30 chr3 130223890 130224482 -97300096 + MER4B-int LTR ERV1 3817 4426 -2172 396 55 0 0 chr3 130224601 130224656 -97299922 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 26 50 0 0 chr3 130224944 130224984 -97299594 + AT_rich Low_complexity Low_complexity 1 40 0 22 103 0 0 chr3 130225196 130225274 -97299304 + AT_rich Low_complexity Low_complexity 1 78 0 5821 121 31 6 chr3 130225777 130226832 -97297746 - L1MA4A LINE L1 0 6303 5223 305 256 58 8 chr3 130226832 130226953 -97297625 - Charlie7 DNA MER1_type -1122 1490 1364 4119 225 116 66 chr3 130228020 130230211 -97294367 - Charlie7 DNA MER1_type -311 2301 2 204 296 122 17 chr3 130230249 130230364 -97294214 + MIR SINE MIR 72 198 -64 342 171 0 0 chr3 130230492 130230562 -97294016 + GA-rich Low_complexity Low_complexity 1 70 0 29 0 0 0 chr3 130231371 130231400 -97293178 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr3 130231555 130231584 -97292994 + AT_rich Low_complexity Low_complexity 1 29 0 314 325 64 10 chr3 130231724 130231862 -97292716 + MIR SINE MIR 4 147 -61 887 183 0 30 chr3 130231988 130232157 -97292421 - FRAM SINE Alu -1 165 2 942 33 0 33 chr3 130232501 130232622 -97291956 - AluY SINE Alu 0 311 195 430 279 112 11 chr3 130233019 130233198 -97291380 + MIR SINE MIR 8 204 -58 329 270 151 8 chr3 130233214 130233340 -97291238 - MIR SINE MIR -8 254 111 245 175 0 0 chr3 130233423 130233463 -97291115 + MIR SINE MIR 217 256 -6 2633 151 14 18 chr3 130233673 130234162 -97290416 + L1MC1 LINE L1 5847 6333 0 329 283 76 11 chr3 130234481 130234573 -97290005 - MIR SINE MIR -95 113 16 563 239 30 0 chr3 130238193 130238327 -97286251 + MIR SINE MIR 96 233 -29 288 314 44 12 chr3 130238822 130239070 -97285508 + L1ME3A LINE L1 4738 4993 -1153 420 123 25 0 chr3 130239197 130239278 -97285300 + L1PA13 LINE L1 6080 6162 -1 1738 194 3 0 chr3 130239295 130239599 -97284979 + AluJo SINE Alu 1 305 -7 2385 148 78 2 chr3 130239599 130240073 -97284505 + L1MA8 LINE L1 5777 6286 -5 1058 278 47 31 chr3 130240201 130240826 -97283752 + L1ME3A LINE L1 5257 5886 -276 324 284 216 0 chr3 130241229 130241363 -97283215 - MER5A DNA MER1_type -1 188 26 1801 190 3 13 chr3 130241544 130241854 -97282724 + AluSx SINE Alu 4 310 -2 5546 112 10 33 chr3 130246458 130247098 -97277480 + L1PA13 LINE L1 4713 5367 -796 2236 112 7 0 chr3 130247098 130247403 -97277175 + AluSx SINE Alu 1 307 -5 5546 112 10 33 chr3 130247403 130248225 -97276353 + L1PA13 LINE L1 5367 6163 0 253 323 164 21 chr3 130249020 130249209 -97275369 + MIR SINE MIR 8 223 -39 335 93 0 0 chr3 130250988 130251042 -97273536 + MADE1 DNA Mariner 1 54 -26 271 167 0 0 chr3 130251061 130251109 -97273469 - MLT1J LTR MaLR -355 156 109 207 0 0 0 chr3 130252660 130252683 -97271895 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 26 0 0 0 chr3 130253125 130253151 -97271427 + AT_rich Low_complexity Low_complexity 1 26 0 498 322 16 16 chr3 130253603 130253825 -97270753 + MLT1K LTR MaLR 327 551 -37 2314 84 3 3 chr3 130253825 130254136 -97270442 - AluY SINE Alu 0 311 1 498 322 16 16 chr3 130254136 130254171 -97270407 + MLT1K LTR MaLR 550 584 -4 1540 201 42 11 chr3 130254213 130254567 -97270011 - MLT1A1 LTR MaLR 0 365 1 225 224 17 0 chr3 130254700 130254758 -97269820 + (TA)n Simple_repeat Simple_repeat 1 59 0 9490 140 21 10 chr3 130255165 130256946 -97267632 - L1PA15-16 LINE L1 -3038 3811 2003 7030 196 25 5 chr3 130257067 130258605 -97265973 + L1P LINE L1 2681 4249 -1897 2085 117 0 0 chr3 130259433 130259745 -97264833 + AluSq SINE Alu 2 313 0 969 178 107 0 chr3 130262048 130262245 -97262333 - MIR SINE MIR -24 238 21 253 320 96 16 chr3 130262293 130262418 -97262160 + L2 LINE L2 2835 2969 -345 244 327 178 9 chr3 130262543 130262650 -97261928 - MIR SINE MIR -67 141 17 243 326 22 0 chr3 130262761 130262853 -97261725 + CT-rich Low_complexity Low_complexity 2 95 0 903 240 57 28 chr3 130262870 130263187 -97261391 + L1ME1 LINE L1 5509 5834 -332 8199 106 7 5 chr3 130263443 130264728 -97259850 - L1P LINE L1 -1134 5012 3726 467 249 71 25 chr3 130264871 130265068 -97259510 + L1MC5 LINE L1 7454 7659 -302 7025 118 5 16 chr3 130265071 130266160 -97258418 - HSMAR1 DNA Mariner 0 1287 212 621 259 88 55 chr3 130266682 130267079 -97257499 - MLT1J LTR MaLR -31 480 71 21 36 0 0 chr3 130269410 130269438 -97255140 + AT_rich Low_complexity Low_complexity 1 28 0 36 0 0 0 chr3 130270431 130270467 -97254111 + AT_rich Low_complexity Low_complexity 1 36 0 1242 162 8 12 chr3 130270862 130271103 -97253475 + L1PB1 LINE L1 5911 6150 -1 1494 147 107 7 chr3 130271447 130271746 -97252832 - MER51B LTR ERV1 0 377 49 490 129 140 11 chr3 130271761 130271854 -97252724 - MER51A LTR ERV1 -529 105 1 555 128 1 0 chr3 130271974 130272073 -97252505 + L1MA5 LINE L1 6023 6122 -169 4175 128 63 13 chr3 130272188 130272944 -97251634 - LOR1a-int LTR ERV1 -7127 993 200 1767 189 60 0 chr3 130272953 130273303 -97251275 - LOR1a-int LTR ERV1 -7749 371 1 472 276 35 22 chr3 130273306 130273534 -97251044 - LOR1a LTR ERV1 -3 494 264 3754 173 13 4 chr3 130273639 130274942 -97249636 - L1P4 LINE L1 -353 5813 4503 2075 99 40 13 chr3 130275529 130275832 -97248746 - AluY SINE Alu 0 311 1 22 35 0 0 chr3 130276279 130276308 -97248270 + AT_rich Low_complexity Low_complexity 1 29 0 746 127 79 18 chr3 130276325 130276490 -97248088 - LOR1-int LTR ERV1 -5123 2997 2823 2370 249 38 17 chr3 130276726 130277365 -97247213 + MER82 DNA MER2_type 1 652 -1 7395 101 10 11 chr3 130278282 130279457 -97245121 + L1P LINE L1 3805 4978 -1168 526 207 0 16 chr3 130279558 130279679 -97244899 + MLT1A2 LTR MaLR 256 374 0 2127 103 3 35 chr3 130280309 130280620 -97243958 + AluSx SINE Alu 1 301 -11 747 186 32 4 chr3 130280620 130280810 -97243768 + MER61D LTR ERV1 323 490 -11 903 186 0 0 chr3 130281443 130281604 -97242974 + MLT1B LTR MaLR 229 389 -1 644 294 53 44 chr3 130281605 130282017 -97242561 - MLT1J LTR MaLR -34 477 62 412 282 129 39 chr3 130282250 130282505 -97242073 + L1ME4a LINE L1 5687 5964 -157 8478 90 3 9 chr3 130283076 130284277 -97240301 - THE1-int LTR MaLR -386 1194 1 2923 224 53 12 chr3 130284395 130285299 -97239279 - L1 LINE L1 -2365 3781 2841 1044 246 73 56 chr3 130286267 130286345 -97238233 + L1M4b LINE L1 11 86 -6773 447 35 0 0 chr3 130286345 130286402 -97238176 + (CA)n Simple_repeat Simple_repeat 2 58 0 1044 246 73 56 chr3 130286402 130286681 -97237897 + L1M4b LINE L1 86 374 -6485 327 330 102 47 chr3 130286991 130287206 -97237372 + L2 LINE L2 2709 2935 -379 638 298 0 23 chr3 130287215 130287430 -97237148 + HERVL LTR ERVL 4665 4874 -780 220 370 86 29 chr3 130287666 130288112 -97236466 - L2 LINE L2 -940 2374 1837 2512 69 0 0 chr3 130288346 130288696 -97235882 - L1P LINE L1 -1514 4632 4283 4545 62 0 0 chr3 130288696 130289256 -97235322 + L1PA7 LINE L1 5581 6146 -8 325 307 12 34 chr3 130290814 130291031 -97233547 + C-rich Low_complexity Low_complexity 1 212 0 243 275 0 58 chr3 130291078 130291249 -97233329 + CT-rich Low_complexity Low_complexity 5 165 0 233 315 19 28 chr3 130292043 130292151 -97232427 + MLT1L LTR MaLR 437 543 -72 5818 64 9 0 chr3 130292573 130293350 -97231228 - L1P LINE L1 -4384 1762 979 278 236 18 0 chr3 130293851 130293906 -97230672 + L3 LINE CR1 1513 1568 -9 5741 93 19 5 chr3 130293984 130294814 -97229764 + L1P LINE L1 1 842 -5304 4460 138 25 33 chr3 130294964 130295861 -97228717 - HERVH LTR ERV1 -6341 1372 362 1552 62 22 9 chr3 130295897 130296123 -97228455 - L1PA2 LINE L1 0 6155 5927 2481 175 35 19 chr3 130296563 130297083 -97227495 - LTR27 LTR ERV1 -11 493 3 996 161 65 15 chr3 130297084 130297283 -97227295 - LTR27-int LTR ERV1 0 5217 5009 24 0 0 0 chr3 130297460 130297484 -97227094 + GC_rich Low_complexity Low_complexity 1 24 0 1065 177 165 16 chr3 130298043 130298292 -97226286 - MLT1D LTR MaLR 0 505 220 729 275 59 44 chr3 130298293 130298631 -97225947 + L1MC4a LINE L1 5587 5929 -1879 321 325 69 5 chr3 130299505 130299693 -97224885 - MER110 LTR ERV1 -39 452 253 2334 39 32 3 chr3 130300213 130300498 -97224080 - MER11B LTR ERVK -943 293 1 360 0 0 0 chr3 130300971 130301011 -97223567 + (TA)n Simple_repeat Simple_repeat 2 41 0 709 232 51 34 chr3 130302335 130302512 -97222066 + MIR SINE MIR 68 247 -15 340 229 73 37 chr3 130302800 130302864 -97221714 - LOR1a LTR ERV1 -334 163 91 2109 113 0 0 chr3 130302864 130303160 -97221418 - AluSg SINE Alu 0 304 9 340 229 73 37 chr3 130303160 130303203 -97221375 - LOR1a LTR ERV1 -406 91 51 190 73 49 0 chr3 130303203 130303244 -97221334 + (TA)n Simple_repeat Simple_repeat 1 43 0 3784 116 40 6 chr3 130303247 130303562 -97221016 - LOR1-int LTR ERV1 -5808 2312 2009 210 37 0 0 chr3 130303562 130303589 -97220989 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3784 116 40 6 chr3 130303589 130303947 -97220631 - LOR1-int LTR ERV1 -6111 2009 1616 1047 232 28 0 chr3 130304078 130304362 -97220216 + L1PA5 LINE L1 5848 6139 -15 230 228 40 20 chr3 130304703 130304804 -97219774 + (TCTTG)n Simple_repeat Simple_repeat 1 103 0 7621 125 60 35 chr3 130305169 130307419 -97217159 + MER4A-int LTR ERV1 3936 6593 -5 631 99 0 30 chr3 130307430 130307531 -97217047 + MER4A LTR ERV1 1 98 -566 1804 132 3 51 chr3 130307531 130307894 -97216684 + MER4A LTR ERV1 261 664 0 * 1900 136 31 7 chr3 130307894 130308187 -97216391 + MSTA LTR MaLR 129 428 0 215 344 106 22 chr3 130308275 130308455 -97216123 - L2 LINE L2 -877 2437 2243 2322 86 10 0 chr3 130308820 130309123 -97215455 + AluSc SINE Alu 1 306 -3 229 218 0 103 chr3 130309374 130309452 -97215126 + MIR SINE MIR 129 198 -64 3248 133 73 0 chr3 130310387 130310937 -97213641 - L1PA16 LINE L1 -8 6158 5569 763 183 0 0 chr3 130310937 130311063 -97213515 + L1PA16 LINE L1 5444 5569 -597 383 119 0 0 chr3 130312177 130312244 -97212334 + L1MA8 LINE L1 6225 6291 0 16569 37 1 2 chr3 130312257 130314305 -97210273 - L1P LINE L1 -1312 4834 2790 2894 45 0 0 chr3 130314305 130314656 -97209922 + L1PA5 LINE L1 5796 6147 -7 528 252 149 1 chr3 130314883 130315138 -97209440 + L1ME LINE L1 5504 5805 -316 24 32 0 0 chr3 130315447 130315478 -97209100 + AT_rich Low_complexity Low_complexity 1 31 0 637 298 22 11 chr3 130315837 130316018 -97208560 - MER5A DNA MER1_type 0 189 7 201 175 123 0 chr3 130316193 130316250 -97208328 + L3 LINE CR1 904 967 -610 1816 163 0 17 chr3 130316877 130317177 -97207401 - AluJb SINE Alu -17 295 1 302 277 284 14 chr3 130317177 130317318 -97207260 - MER5A DNA MER1_type -2 187 9 1621 295 82 30 chr3 130317775 130318413 -97206165 + L2 LINE L2 2224 2894 -420 573 225 23 8 chr3 130318411 130318540 -97206038 + L2 LINE L2 3183 3313 0 * 31 0 0 0 chr3 130320527 130320558 -97204020 + AT_rich Low_complexity Low_complexity 1 31 0 471 338 89 49 chr3 130321246 130321771 -97202807 - L2 LINE L2 0 3313 2770 915 138 0 0 chr3 130322028 130322180 -97202398 + (TA)n Simple_repeat Simple_repeat 2 153 0 24 32 0 0 chr3 130322707 130322738 -97201840 + AT_rich Low_complexity Low_complexity 1 31 0 260 245 0 130 chr3 130322856 130322999 -97201579 - L2 LINE L2 -1015 2299 2184 540 241 66 18 chr3 130322999 130323165 -97201413 - MER5B DNA MER1_type 0 178 5 260 245 0 130 chr3 130323165 130323205 -97201373 - L2 LINE L2 -1130 2184 2140 1314 183 92 54 chr3 130323227 130323769 -97200809 + MLT1E2 LTR MaLR 3 626 0 1672 157 3 27 chr3 130323858 130324151 -97200427 - AluJb SINE Alu -16 296 11 295 210 226 73 chr3 130326167 130326291 -97198287 + MER5A DNA MER1_type 41 183 -6 305 368 8 0 chr3 130327703 130327820 -97196758 - MIR SINE MIR -58 150 33 208 205 0 0 chr3 130327930 130327969 -97196609 - MIR SINE MIR -65 143 105 226 244 0 0 chr3 130328243 130328288 -97196290 + Charlie7 DNA MER1_type 1 45 -2567 2050 114 0 36 chr3 130328345 130328652 -97195926 - AluSx SINE Alu -16 296 1 797 241 62 0 chr3 130328656 130328851 -97195727 - L1ME3A LINE L1 -8 6162 5956 13688 124 30 71 chr3 130328853 130331026 -97193552 + Tigger1 DNA MER2_type 1 2262 -156 4530 62 3 56 chr3 130331026 130331674 -97192904 - L1PA6 LINE L1 -2 6152 5539 13688 124 30 71 chr3 130331674 130331882 -97192696 + Tigger1 DNA MER2_type 2262 2275 -143 1734 194 0 0 chr3 130331882 130332181 -97192397 - AluJo SINE Alu -12 300 2 13688 124 30 71 chr3 130332181 130332319 -97192259 + Tigger1 DNA MER2_type 2275 2417 -1 494 157 0 0 chr3 130332323 130332412 -97192166 - L1ME3A LINE L1 -218 5952 5864 216 248 78 85 chr3 130332664 130332793 -97191785 - L2 LINE L2 -8 3305 3178 479 297 0 0 chr3 130334706 130334817 -97189761 + MER81 DNA DNA 4 114 0 206 349 0 0 chr3 130334818 130334881 -97189697 - MIR3 SINE MIR -27 181 119 1640 169 97 0 chr3 130335241 130335572 -97189006 - MLT1A1 LTR MaLR -2 363 1 2351 72 0 16 chr3 130336689 130336994 -97187584 - AluY SINE Alu -11 300 1 223 287 178 30 chr3 130336996 130337097 -97187481 + L2 LINE L2 3197 3312 -1 283 361 124 5 chr3 130337251 130337445 -97187133 + MIR SINE MIR 41 257 -5 253 406 9 0 chr3 130337524 130337630 -97186948 + MIR3 SINE MIR 50 156 -52 568 228 19 63 chr3 130337753 130337911 -97186667 - LTR16A LTR ERVL -1 449 299 284 44 0 44 chr3 130338121 130338166 -97186412 + MADE1 DNA Mariner 38 80 0 4798 231 62 50 chr3 130338338 130338862 -97185716 + L1M4 LINE L1 2433 2949 -3197 657 203 0 23 chr3 130338862 130338990 -97185588 - FLAM_A SINE Alu -8 125 1 4798 231 62 50 chr3 130338990 130340176 -97184402 + L1M4 LINE L1 2949 4163 -1983 1156 229 44 7 chr3 130340163 130340438 -97184140 + L1ME1 LINE L1 5812 6096 -70 * 323 259 46 9 chr3 130340439 130340547 -97184031 + L1ME1 LINE L1 6048 6159 -7 372 236 34 11 chr3 130341477 130341566 -97183012 - MIR SINE MIR -23 239 149 372 164 27 0 chr3 130341993 130342066 -97182512 - MER103 DNA DNA -77 89 15 1363 214 54 39 chr3 130343556 130343598 -97180980 + MER110A LTR ERV1 2 42 -449 1685 171 127 26 chr3 130343598 130343985 -97180593 + MSTA LTR MaLR 1 426 -2 1363 214 54 39 chr3 130343985 130344095 -97180483 + MER110A LTR ERV1 42 149 -342 1966 144 141 8 chr3 130344095 130344471 -97180107 - MSTB LTR MaLR 0 426 1 1363 214 54 39 chr3 130344471 130344791 -97179787 + MER110A LTR ERV1 149 471 -20 1104 220 18 26 chr3 130345464 130345737 -97178841 - MLT1A2 LTR MaLR 0 374 104 330 212 0 61 chr3 130346355 130346454 -97178124 - L1MC4 LINE L1 -1339 6703 6611 324 120 0 0 chr3 130346475 130346525 -97178053 + (CA)n Simple_repeat Simple_repeat 2 51 0 2676 85 31 8 chr3 130346553 130346942 -97177636 + MLT2A1 LTR ERVL 1 398 -46 412 179 0 60 chr3 130347026 130347194 -97177384 + (TA)n Simple_repeat Simple_repeat 2 159 0 2178 145 3 0 chr3 130347221 130347532 -97177046 - AluSx SINE Alu 0 312 1 258 156 0 0 chr3 130347567 130347612 -97176966 + (TG)n Simple_repeat Simple_repeat 2 46 0 492 214 19 0 chr3 130348573 130348676 -97175902 - MER63B DNA MER1_type 0 435 331 848 153 0 7 chr3 130348679 130348816 -97175762 + FLAM_C SINE Alu 5 140 -3 1524 177 24 24 chr3 130348816 130349150 -97175428 - MER63B DNA MER1_type -102 334 1 280 301 59 37 chr3 130349208 130349563 -97175015 - L1MC5 LINE L1 -44 7917 7555 255 345 55 51 chr3 130350240 130350709 -97173869 - L2 LINE L2 -568 2746 2276 193 374 48 0 chr3 130350940 130351023 -97173555 + L2 LINE L2 2693 2779 -535 257 268 0 0 chr3 130351244 130351300 -97173278 - L2 LINE L2 -23 3249 3194 3307 169 50 5 chr3 130352234 130352869 -97171709 - L1MB3 LINE L1 -1 6182 5519 230 344 32 79 chr3 130353297 130353486 -97171092 - L2 LINE L2 -4 3268 3089 1433 199 132 20 chr3 130353929 130354285 -97170293 - MSTD LTR MaLR 0 396 1 342 234 39 78 chr3 130354878 130355032 -97169546 - L1MC5 LINE L1 -48 7913 7766 2168 112 0 3 chr3 130355039 130355334 -97169244 + AluSg SINE Alu 1 294 -16 204 158 0 0 chr3 130355334 130355372 -97169206 + G-rich Low_complexity Low_complexity 3 40 0 1374 194 56 14 chr3 130355481 130355765 -97168813 - AluJo SINE Alu -16 296 1 1896 177 7 7 chr3 130356479 130356789 -97167789 - AluJb SINE Alu -2 310 1 687 307 46 36 chr3 130357454 130357760 -97166818 - L2 LINE L2 0 3313 3005 2222 211 73 87 chr3 130358258 130359219 -97165359 + L1MC4 LINE L1 7095 8041 -1 228 209 0 0 chr3 130359314 130359357 -97165221 - L2 LINE L2 -13 3259 3217 493 248 75 8 chr3 130359480 130359613 -97164965 - MIR SINE MIR -50 212 71 1114 192 13 34 chr3 130359726 130359960 -97164618 + AluJo SINE Alu 27 255 -57 606 118 0 0 chr3 130360096 130360181 -97164397 + AluS SINE Alu 1 85 -227 451 199 58 64 chr3 130360181 130360337 -97164241 + pTR5 LTR ERV1 743 897 -1541 1472 87 0 15 chr3 130360346 130360541 -97164037 - AluSx SINE Alu -120 192 1 2422 66 0 7 chr3 130360905 130361208 -97163370 + AluY SINE Alu 1 301 -10 1874 154 3 10 chr3 130361290 130361596 -97162982 + AluSq SINE Alu 4 307 -6 548 212 45 63 chr3 130361964 130362186 -97162392 + L1MA9 LINE L1 5788 6005 -307 2408 93 13 0 chr3 130362508 130362809 -97161769 - AluSx SINE Alu -7 305 1 327 247 73 84 chr3 130363616 130363794 -97160784 + L1ME4a LINE L1 5881 6056 -65 780 116 8 8 chr3 130363847 130363976 -97160602 - THE1C LTR MaLR 0 375 247 2058 91 9 138 chr3 130363980 130364421 -97160157 - THE1C-int LTR MaLR -1179 401 18 574 198 81 20 chr3 130364439 130364636 -97159942 - THE1C LTR MaLR -4 371 163 189 107 0 0 chr3 130366035 130366063 -97158515 + (TG)n Simple_repeat Simple_repeat 1 28 0 234 196 0 18 chr3 130366063 130366119 -97158459 + GA-rich Low_complexity Low_complexity 2 56 0 2272 97 3 10 chr3 130366586 130366896 -97157682 + AluSx SINE Alu 1 308 -4 1654 170 3 24 chr3 130367467 130367756 -97156822 - AluJo SINE Alu -29 283 1 753 220 38 0 chr3 130367756 130367915 -97156663 + MER20 DNA MER1_type 55 219 0 275 269 93 0 chr3 130367970 130368078 -97156500 + MLT1L LTR MaLR 163 280 -335 23 0 0 0 chr3 130368486 130368509 -97156069 + AT_rich Low_complexity Low_complexity 1 23 0 1780 161 7 13 chr3 130369075 130369380 -97155198 - AluJb SINE Alu -9 303 1 2244 125 0 0 chr3 130369676 130369981 -97154597 + AluSx SINE Alu 1 305 -7 392 217 148 0 chr3 130371233 130371348 -97153230 + L2 LINE L2 3182 3313 0 2886 187 123 73 chr3 130371806 130372163 -97152415 - Charlie1a DNA MER1_type -1828 933 595 1783 152 17 0 chr3 130372163 130372459 -97152119 - AluSx SINE Alu -7 305 5 2886 187 123 73 chr3 130372459 130372989 -97151589 - Charlie1a DNA MER1_type -2166 595 2 564 268 25 10 chr3 130372990 130373197 -97151381 - L1M4 LINE L1 -1103 5043 4834 297 282 74 32 chr3 130374061 130374293 -97150285 + L1ME LINE L1 5415 5658 -506 26 0 0 0 chr3 130374520 130374546 -97150032 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr3 130374585 130374615 -97149963 + AT_rich Low_complexity Low_complexity 1 30 0 883 177 0 44 chr3 130374935 130375093 -97149485 + FRAM SINE Alu 2 152 -24 26 36 0 0 chr3 130375094 130375122 -97149456 + AT_rich Low_complexity Low_complexity 1 28 0 201 121 0 0 chr3 130378229 130378262 -97146316 + (ATG)n Simple_repeat Simple_repeat 3 35 0 28 0 0 0 chr3 130379144 130379172 -97145406 + AT_rich Low_complexity Low_complexity 1 28 0 355 269 83 40 chr3 130379209 130379540 -97145038 - MLT1J LTR MaLR -21 474 86 784 254 0 0 chr3 130379543 130379708 -97144870 + FRAM SINE Alu 1 165 -11 1981 61 0 16 chr3 130380616 130380862 -97143716 + AluY SINE Alu 1 242 -69 2338 58 3 17 chr3 130380966 130381261 -97143317 + AluY SINE Alu 17 307 -4 1529 155 11 0 chr3 130381275 130381540 -97143038 + L1PA16 LINE L1 5457 5724 -442 2245 165 41 2 chr3 130381628 130382041 -97142537 + L1PA16 LINE L1 5737 6165 -1 2185 95 3 3 chr3 130382196 130382531 -97142047 + AluSq SINE Alu 5 339 0 1316 122 6 6 chr3 130385168 130385382 -97139196 - AluSg/x SINE Alu 0 319 106 2399 35 6 41 chr3 130386047 130386361 -97138217 + L1PA5 LINE L1 5852 6154 0 370 311 142 44 chr3 130386418 130386777 -97137801 + L1MEd LINE L1 938 1419 -1071 363 341 65 34 chr3 130387279 130387783 -97136795 + L1MC4a LINE L1 5355 5874 -1934 201 147 0 0 chr3 130387868 130387902 -97136676 + (TATATG)n Simple_repeat Simple_repeat 5 38 0 699 294 123 0 chr3 130388525 130388753 -97135825 + MIR SINE MIR 5 260 -2 1165 217 100 9 chr3 130389023 130389460 -97135118 - MLT1F LTR MaLR 0 542 1 453 321 89 9 chr3 130390609 130390833 -97133745 + MIR SINE MIR 6 247 -15 462 238 8 8 chr3 130391344 130391466 -97133112 - MLT1K LTR MaLR -9 579 458 19831 132 16 15 chr3 130391468 130392711 -97131867 + L1PA15 LINE L1 1 1240 -5240 195 100 0 0 chr3 130392711 130392741 -97131837 + (CAA)n Simple_repeat Simple_repeat 1 30 0 19831 132 16 15 chr3 130392741 130395739 -97128839 + L1PA15 LINE L1 1240 4292 -2188 2022 147 3 0 chr3 130395739 130396038 -97128540 + AluSx SINE Alu 4 303 -9 19831 132 16 15 chr3 130396038 130398231 -97126347 + L1PA15 LINE L1 4292 6480 0 652 378 46 14 chr3 130398276 130398691 -97125887 - MLT1K LTR MaLR -133 455 28 181 243 0 0 chr3 130398846 130398883 -97125695 + L2 LINE L2 3269 3305 -8 186 43 0 0 chr3 130399941 130399964 -97124614 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 199 316 95 32 chr3 130400516 130400611 -97123967 - MIR SINE MIR -70 192 92 189 0 0 0 chr3 130401560 130401581 -97122997 + (T)n Simple_repeat Simple_repeat 1 21 0 238 325 16 24 chr3 130403258 130403381 -97121197 + LTR67 LTR ERVL 436 557 0 1500 176 6 71 chr3 130404020 130404344 -97120234 + AluJo SINE Alu 1 303 -9 432 0 0 0 chr3 130404543 130404591 -97119987 + (TG)n Simple_repeat Simple_repeat 2 49 0 6183 94 34 0 chr3 130405021 130406351 -97118227 + L1PA11 LINE L1 4809 6173 -1 599 311 6 0 chr3 130407292 130407459 -97117119 - MIR SINE MIR -49 213 46 2437 68 0 0 chr3 130409845 130410139 -97114439 - AluY SINE Alu -17 294 1 1538 38 0 0 chr3 130410616 130410799 -97113779 - AluYb8 SINE Alu 0 318 136 586 101 10 0 chr3 130410996 130411095 -97113483 - L1MB2 LINE L1 0 6171 6072 1833 62 8 4 chr3 130411110 130411353 -97113225 - L1PA10 LINE L1 -2 6166 5923 2270 111 0 0 chr3 130411783 130412080 -97112498 - AluSg SINE Alu -13 297 1 950 148 0 13 chr3 130414251 130414400 -97110178 - MLT1C LTR MaLR 0 467 321 7079 131 5 17 chr3 130414408 130415795 -97108783 - L1MA2 LINE L1 0 6304 4944 554 212 188 52 chr3 130415796 130416084 -97108494 - LTR37A LTR ERV1 -64 362 36 459 305 119 6 chr3 130418635 130418812 -97105766 - MIR SINE MIR -34 228 32 206 295 16 0 chr3 130419042 130419103 -97105475 + MIR3 SINE MIR 110 171 -37 545 304 112 46 chr3 130419723 130420115 -97104463 + MLT1K LTR MaLR 103 520 -68 3756 216 49 9 chr3 130420137 130421292 -97103286 - L1ME1 LINE L1 0 6166 4970 335 292 243 41 chr3 130421438 130421853 -97102725 + L1M4 LINE L1 4552 5050 -1096 186 324 223 27 chr3 130423442 130423590 -97100988 + MIR SINE MIR 20 196 -66 22 0 0 0 chr3 130423608 130423630 -97100948 + AT_rich Low_complexity Low_complexity 1 22 0 610 321 97 8 chr3 130424000 130424268 -97100310 - LTR16A LTR ERVL -158 292 1 653 268 146 80 chr3 130424356 130424796 -97099782 - MLT1H LTR MaLR -8 541 73 2180 131 0 0 chr3 130425652 130425957 -97098621 - AluSx SINE Alu -7 305 1 234 377 16 33 chr3 130425962 130426145 -97098433 - MER5A DNA MER1_type -3 186 7 21 0 0 0 chr3 130426600 130426621 -97097957 + AT_rich Low_complexity Low_complexity 1 21 0 1332 201 11 33 chr3 130426735 130427008 -97097570 - AluJo SINE Alu -45 267 1 23 0 0 0 chr3 130427016 130427039 -97097539 + AT_rich Low_complexity Low_complexity 1 23 0 581 366 121 11 chr3 130428118 130428563 -97096015 + L3 LINE CR1 192 685 -892 1333 218 72 22 chr3 130428768 130429185 -97095393 + MLT1D LTR MaLR 1 505 0 855 181 168 58 chr3 130430940 130431250 -97093328 - MER2 DNA MER2_type 0 344 1 294 333 161 42 chr3 130431401 130431686 -97092892 + L2 LINE L2 2953 3271 -1 454 285 41 16 chr3 130431794 130431917 -97092661 + L2 LINE L2 3186 3311 -2 1522 241 24 77 chr3 130432798 130433295 -97091283 + MLT1D LTR MaLR 3 473 -32 511 312 80 56 chr3 130433543 130433793 -97090785 - L2 LINE L2 -845 2469 2214 1584 158 61 7 chr3 130434321 130434600 -97089978 - AluJo SINE Alu -11 301 8 2631 148 12 5 chr3 130435202 130435627 -97088951 - MSTC LTR MaLR 0 428 1 2465 268 137 37 chr3 130436128 130437285 -97087293 + L1ME2 LINE L1 299 1572 -4899 845 269 65 70 chr3 130437323 130437691 -97086887 - LTR52 LTR ERVL -37 384 17 1354 197 91 4 chr3 130437691 130437965 -97086613 - AluJb SINE Alu -14 298 1 845 269 65 70 chr3 130437965 130437982 -97086596 - LTR52 LTR ERVL -404 17 1 1818 269 44 60 chr3 130437984 130438303 -97086275 + L1ME2 LINE L1 1804 2127 -4995 225 0 0 0 chr3 130438303 130438328 -97086250 + (CA)n Simple_repeat Simple_repeat 1 25 0 1818 269 44 60 chr3 130438328 130438561 -97086017 + L1ME2 LINE L1 2127 2362 -4760 1278 195 140 0 chr3 130438561 130438818 -97085760 - AluJb SINE Alu -19 293 1 1818 269 44 60 chr3 130438818 130439279 -97085299 + L1ME2 LINE L1 2362 2802 -4320 1650 210 40 17 chr3 130439296 130439700 -97084878 + LTR52 LTR ERVL 1 413 -8 3417 255 121 22 chr3 130439704 130440591 -97083987 + L1ME2 LINE L1 2827 3625 -3316 575 175 114 0 chr3 130440591 130440705 -97083873 + FLAM_C SINE Alu 5 131 -2 1190 195 107 4 chr3 130440709 130440971 -97083607 + AluJo SINE Alu 3 291 -11 3417 255 121 22 chr3 130440971 130441228 -97083350 + L1ME2 LINE L1 3627 3857 -3084 2287 72 45 0 chr3 130441228 130441519 -97083059 + AluY SINE Alu 1 304 -7 3417 255 121 22 chr3 130441519 130442173 -97082405 + L1ME2 LINE L1 3857 4768 -2173 1085 204 85 107 chr3 130442179 130442522 -97082056 + L1ME2 LINE L1 5483 5811 -1130 2171 103 0 6 chr3 130442522 130442834 -97081744 + AluYa8 SINE Alu 1 310 0 1085 204 85 107 chr3 130442834 130443044 -97081534 + L1ME2 LINE L1 5811 6024 -917 2293 237 73 41 chr3 130443086 130443897 -97080681 + L1ME2 LINE L1 6134 7128 -1 869 195 219 120 chr3 130444081 130444506 -97080072 + MLT1A2 LTR MaLR 1 467 0 373 295 96 25 chr3 130445113 130445304 -97079274 + MIR SINE MIR 2 206 -56 24 53 0 0 chr3 130445540 130445578 -97079000 + AT_rich Low_complexity Low_complexity 1 38 0 26 0 0 0 chr3 130446328 130446354 -97078224 + AT_rich Low_complexity Low_complexity 1 26 0 4633 204 56 17 chr3 130446695 130447514 -97077064 - L1MB7 LINE L1 -1 6183 5398 1298 216 91 14 chr3 130447514 130447876 -97076702 - MLT1B LTR MaLR 0 390 1 4633 204 56 17 chr3 130447876 130447901 -97076677 - L1MB7 LINE L1 -786 5398 5375 1864 143 3 39 chr3 130447901 130448208 -97076370 - AluJb SINE Alu -16 296 1 4633 204 56 17 chr3 130448208 130449410 -97075168 - L1MB7 LINE L1 -809 5375 4050 198 0 0 0 chr3 130449412 130449434 -97075144 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 44320 34 1 3 chr3 130449434 130455587 -97068991 - L1PA3 LINE L1 -13 6142 3 1568 220 36 14 chr3 130455591 130456004 -97068574 - L1MB7 LINE L1 -2091 4055 3634 261 0 0 0 chr3 130457993 130458022 -97066556 + (TTG)n Simple_repeat Simple_repeat 2 30 0 647 228 15 0 chr3 130458237 130458373 -97066205 + Charlie8 DNA MER1_type 105 242 -2175 377 315 13 13 chr3 130458379 130458528 -97066050 + MIR SINE MIR 104 252 -10 226 163 143 0 chr3 130458606 130458655 -97065923 + Charlie8 DNA MER1_type 1362 1417 -1000 313 374 0 0 chr3 130459433 130459548 -97065030 + L3 LINE CR1 1380 1494 -83 355 234 0 39 chr3 130462271 130462348 -97062230 - MLT1E1 LTR MaLR -548 106 33 1819 236 162 14 chr3 130463122 130463690 -97060888 - MLT1E1 LTR MaLR -2 652 1 30 27 0 0 chr3 130464308 130464345 -97060233 + AT_rich Low_complexity Low_complexity 1 37 0 682 141 16 43 chr3 130466208 130466393 -97058185 + CT-rich Low_complexity Low_complexity 1 180 0 675 238 173 19 chr3 130467121 130467335 -97057243 + MIR SINE MIR 9 255 -7 189 238 0 0 chr3 130468184 130468226 -97056352 - MIR3 SINE MIR -13 195 154 421 162 15 0 chr3 130468271 130468339 -97056239 + MER21B LTR ERV1 1 69 -794 * 2845 168 89 35 chr3 130468337 130468943 -97055635 + MER21B LTR ERV1 224 862 -1 247 254 211 40 chr3 130468975 130469203 -97055375 + LTR37A LTR ERV1 140 406 -20 221 222 0 48 chr3 130470425 130470488 -97054090 + CT-rich Low_complexity Low_complexity 2 61 0 186 364 0 0 chr3 130470488 130470554 -97054024 - L2 LINE L2 -2 3270 3205 184 242 32 48 chr3 130470830 130470892 -97053686 - MIR SINE MIR -1 261 201 1070 174 61 0 chr3 130471249 130471462 -97053116 + L1M4 LINE L1 5506 5731 -453 839 165 70 7 chr3 130471460 130471652 -97052926 - L1MB8 LINE L1 -274 5900 5700 * 433 184 13 0 chr3 130472096 130472172 -97052406 - FLAM_A SINE Alu -14 128 52 775 173 196 0 chr3 130473006 130473179 -97051399 - MER3 DNA MER1_type 0 209 3 230 254 18 0 chr3 130473402 130473457 -97051121 - L2 LINE L2 0 3313 3258 2277 189 27 2 chr3 130475284 130475735 -97048843 + MLT1C LTR MaLR 3 464 -3 184 167 45 152 chr3 130476394 130476460 -97048118 + L2 LINE L2 3255 3313 0 514 290 11 84 chr3 130477549 130477811 -97046767 + MIR SINE MIR 3 245 -17 558 286 121 60 chr3 130478721 130479036 -97045542 + L2 LINE L2 2980 3313 0 193 250 114 45 chr3 130479029 130479117 -97045461 - L2 LINE L2 -12 3301 3208 * 2069 136 3 0 chr3 130479163 130479458 -97045120 + AluSq SINE Alu 1 296 -17 475 234 37 0 chr3 130480071 130480178 -97044400 - MER63B DNA MER1_type -2 433 323 1215 208 16 17 chr3 130480184 130480504 -97044074 + MLT1A1 LTR MaLR 1 365 0 943 236 113 7 chr3 130480514 130480798 -97043780 - MER63B DNA MER1_type -122 314 1 1141 256 146 26 chr3 130481783 130482368 -97042210 - L2 LINE L2 -2 3311 2681 397 327 0 0 chr3 130482531 130482632 -97041946 + MER5A DNA MER1_type 6 106 -83 404 233 352 9 chr3 130482695 130482914 -97041664 - L2 LINE L2 -643 2671 2378 696 208 35 40 chr3 130482973 130483175 -97041403 + MLT2D LTR ERVL 81 281 -133 2093 136 0 3 chr3 130483211 130483686 -97040892 - AluSx SINE Alu 0 474 1 1396 259 72 13 chr3 130483772 130484219 -97040359 - L2 LINE L2 -1035 2279 1807 1289 141 92 4 chr3 130484260 130484522 -97040056 - L1MC2 LINE L1 0 6344 6060 250 292 5 15 chr3 130484528 130484594 -97039984 + MIR SINE MIR 53 122 -86 252 288 30 0 chr3 130485135 130485201 -97039377 + L3 LINE CR1 1493 1560 -17 22 0 0 0 chr3 130485548 130485570 -97039008 + AT_rich Low_complexity Low_complexity 1 22 0 592 211 64 44 chr3 130486035 130486239 -97038339 + MER113 DNA MER1_type? 34 241 -280 181 0 0 65 chr3 130486257 130486288 -97038290 + (TAA)n Simple_repeat Simple_repeat 1 29 0 237 209 179 0 chr3 130486455 130486522 -97038056 + MER113 DNA MER1_type? 379 457 -64 2115 167 32 49 chr3 130486555 130486987 -97037591 + MSTB1 LTR MaLR 8 432 0 610 264 84 42 chr3 130487940 130488322 -97036256 - L1M4b LINE L1 -2773 4184 3787 1131 260 98 47 chr3 130488340 130488636 -97035942 + MER74A LTR ERVL 15 345 -213 183 42 0 0 chr3 130488636 130488660 -97035918 + (CCTTG)n Simple_repeat Simple_repeat 3 26 0 1131 260 98 47 chr3 130488660 130488833 -97035745 + MER74A LTR ERVL 345 508 -50 2393 222 68 30 chr3 130488875 130490736 -97033842 - L1M4b LINE L1 -3170 3787 1619 2634 189 41 45 chr3 130490743 130491382 -97033196 - L1MB8 LINE L1 -9 6169 5534 487 249 85 11 chr3 130491384 130491573 -97033005 - L1M4b LINE L1 -5232 1627 1425 698 137 26 17 chr3 130491610 130491727 -97032851 - Tigger1 DNA MER2_type 0 2418 2301 7008 144 35 3 chr3 130491727 130493979 -97030599 + L1MA1 LINE L1 3995 6302 0 12776 140 28 51 chr3 130493992 130496357 -97028221 - Tigger1 DNA MER2_type -105 2313 5 689 211 0 23 chr3 130496455 130496588 -97027990 - FLAM_A SINE Alu -3 130 1 541 279 34 90 chr3 130497515 130497769 -97026809 - MLT1J LTR MaLR -207 304 37 626 200 9 0 chr3 130497769 130497884 -97026694 + FLAM_C SINE Alu 1 116 -17 342 0 0 0 chr3 130497887 130497925 -97026653 + (TA)n Simple_repeat Simple_repeat 1 38 0 * 696 35 0 0 chr3 130497924 130498011 -97026567 + (GA)n Simple_repeat Simple_repeat 2 88 0 541 279 34 90 chr3 130497925 130498074 -97026504 - MLT1J LTR MaLR -476 35 1 2184 196 21 5 chr3 130498589 130499008 -97025570 - MSTB LTR MaLR 0 426 1 220 26 26 26 chr3 130499762 130499800 -97024778 + (TA)n Simple_repeat Simple_repeat 2 39 0 352 284 0 0 chr3 130500009 130500083 -97024495 + MIR3 SINE MIR 111 184 -24 1824 87 62 0 chr3 130550886 130551128 -96973450 + AluSq SINE Alu 56 312 -1 309 322 120 29 chr3 130551438 130551646 -96972932 + MIR SINE MIR 36 262 0 381 283 123 0 chr3 130553573 130553679 -96970899 - L2 LINE L2 -3 3269 3151 426 39 0 0 chr3 130554073 130554125 -96970453 + (TG)n Simple_repeat Simple_repeat 1 52 0 421 278 35 97 chr3 130554304 130554563 -96970015 - MIR SINE MIR -14 248 6 186 43 0 0 chr3 130554973 130554996 -96969582 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2013 91 0 36 chr3 130555000 130555274 -96969304 - AluSg SINE Alu -24 286 23 387 340 136 49 chr3 130555706 130555890 -96968688 + L2 LINE L2 2849 3016 -297 1551 180 0 50 chr3 130555890 130556207 -96968371 - AluJb SINE Alu -11 301 1 387 340 136 49 chr3 130556207 130556448 -96968130 + L2 LINE L2 3016 3311 -2 194 319 0 6 chr3 130556732 130556869 -96967709 - MIR SINE MIR -12 250 50 827 194 15 51 chr3 130557049 130557179 -96967399 + MER5A DNA MER1_type 1 123 -66 2295 120 0 0 chr3 130557179 130557488 -96967090 - AluSx SINE Alu -3 309 1 827 194 15 51 chr3 130557488 130557553 -96967025 + MER5A DNA MER1_type 123 189 0 414 278 0 9 chr3 130557676 130557784 -96966794 + MER81 DNA DNA 3 109 -5 1210 221 159 45 chr3 130557794 130558042 -96966536 - MLT1D LTR MaLR -15 490 272 2095 113 3 0 chr3 130558042 130558371 -96966207 - AluSp SINE Alu 0 330 1 1210 221 159 45 chr3 130558371 130558561 -96966017 - MLT1D LTR MaLR -233 272 1 274 220 0 17 chr3 130558589 130558648 -96965930 + MER81 DNA DNA 50 107 -7 413 330 107 5 chr3 130559492 130559698 -96964880 + MIR SINE MIR 34 260 -2 511 348 67 24 chr3 130559878 130560291 -96964287 - L2 LINE L2 -228 3044 2611 423 253 16 48 chr3 130560313 130560499 -96964079 - LTR33 LTR ERVL -40 481 302 482 231 58 0 chr3 130560517 130560638 -96963940 - LTR16A1 LTR ERVL -2 455 328 289 236 217 0 chr3 130560703 130560833 -96963745 + MIR SINE MIR 32 192 -62 2988 120 5 0 chr3 130561172 130561604 -96962974 - MER57B LTR ERV1 0 434 1 202 167 37 37 chr3 130562116 130562224 -96962354 + GA-rich Low_complexity Low_complexity 5 112 0 332 313 10 0 chr3 130562983 130563079 -96961499 + L2 LINE L2 3215 3311 -2 495 70 0 0 chr3 130563381 130563452 -96961126 + Alu SINE Alu 233 303 -9 228 149 0 0 chr3 130564518 130564565 -96960013 + (T)n Simple_repeat Simple_repeat 1 47 0 5012 27 0 0 chr3 130564580 130565168 -96959410 - L1PA4 LINE L1 0 6155 5568 943 267 85 64 chr3 130565196 130565417 -96959161 - L2 LINE L2 -154 3159 2944 1552 193 0 95 chr3 130565417 130565816 -96958762 - MLT1A1 LTR MaLR 0 365 5 943 267 85 64 chr3 130565816 130566126 -96958452 - L2 LINE L2 -369 2944 2597 429 324 130 14 chr3 130566830 130567046 -96957532 - MIR SINE MIR 0 262 22 478 141 13 0 chr3 130567457 130567535 -96957043 - MADE1 DNA Mariner -1 79 1 424 294 55 61 chr3 130567601 130567764 -96956814 + MER5A DNA MER1_type 3 164 -25 383 215 13 0 chr3 130567764 130567843 -96956735 + MER63 DNA MER1_type 1 706 -130 387 0 0 0 chr3 130568738 130568781 -96955797 + (CA)n Simple_repeat Simple_repeat 2 44 0 334 327 83 12 chr3 130568999 130569167 -96955411 - L3b LINE CR1 -184 1399 1220 2061 133 0 20 chr3 130569358 130569660 -96954918 - AluSq SINE Alu -17 296 1 7584 32 0 0 chr3 130569731 130570927 -96953651 - L1PA4 LINE L1 -1 6154 4959 678 51 0 2 chr3 130570927 130571024 -96953554 + L1P LINE L1 4509 4604 -1542 1191 187 128 19 chr3 130571165 130571486 -96953092 - MER119 DNA MER1_type -51 532 177 503 200 33 8 chr3 130571603 130571723 -96952855 + L1MC1 LINE L1 6211 6333 0 208 240 27 40 chr3 130572002 130572077 -96952501 + CT-rich Low_complexity Low_complexity 1 74 0 302 312 32 56 chr3 130572077 130572202 -96952376 - L2 LINE L2 0 3272 3151 180 305 12 49 chr3 130572217 130572299 -96952279 - L2 LINE L2 0 3272 3194 229 241 130 0 chr3 130572858 130572912 -96951666 - L2 LINE L2 -75 3197 3137 600 147 141 25 chr3 130573201 130573399 -96951179 - MER33 DNA MER1_type 0 324 104 5297 69 49 0 chr3 130573478 130574178 -96950400 + L1PA8 LINE L1 5438 6171 -1 342 214 14 0 chr3 130574190 130574260 -96950318 - MER33 DNA MER1_type -248 76 6 463 324 99 55 chr3 130574414 130574727 -96949851 - L2 LINE L2 -238 3034 2736 189 107 0 0 chr3 130574727 130574755 -96949823 + (TA)n Simple_repeat Simple_repeat 1 28 0 463 324 99 55 chr3 130574755 130575173 -96949405 - L2 LINE L2 -536 2736 2250 612 251 116 29 chr3 130575339 130575546 -96949032 - MIR SINE MIR 0 262 38 182 344 54 0 chr3 130575680 130575773 -96948805 + L2 LINE L2 2799 2896 -418 701 307 55 43 chr3 130575807 130576244 -96948334 + LTR16A LTR ERVL 16 450 0 457 277 66 0 chr3 130576244 130576410 -96948168 + HERV16 LTR ERVL 1 177 -4819 1730 306 65 36 chr3 130576522 130577358 -96947220 + HERV16 LTR ERVL 423 1233 -3763 1779 166 3 57 chr3 130577358 130577477 -96947101 + AluJo SINE Alu 1 125 -187 269 82 20 0 chr3 130577477 130577526 -96947052 + (CAAAA)n Simple_repeat Simple_repeat 3 52 0 1779 166 3 57 chr3 130577526 130577720 -96946858 + AluJo SINE Alu 125 297 -15 1730 306 65 36 chr3 130577720 130578506 -96946072 + HERV16 LTR ERVL 1233 2182 -2814 546 273 55 16 chr3 130578665 130578848 -96945730 + HERV16 LTR ERVL 2441 2630 -2366 1245 328 15 15 chr3 130578875 130579268 -96945310 + HERV16 LTR ERVL 2699 3091 -1905 375 307 50 20 chr3 130579274 130579476 -96945102 + HERV16 LTR ERVL 3346 3553 -2211 1140 335 88 44 chr3 130579871 130581284 -96943294 + HERV16 LTR ERVL 3812 5287 -367 721 326 58 20 chr3 130581497 130581896 -96942682 + LTR16A LTR ERVL 16 429 -21 234 279 15 15 chr3 130582772 130582840 -96941738 - MIR3 SINE MIR -138 70 3 1383 197 7 86 chr3 130583227 130583480 -96941098 - MLT2C1 LTR ERVL -1 396 187 1870 136 0 58 chr3 130583480 130583810 -96940768 + AluSx SINE Alu 1 311 -1 1383 197 7 86 chr3 130583810 130583973 -96940605 - MLT2C1 LTR ERVL -210 187 13 921 223 0 0 chr3 130583995 130584170 -96940408 + AluJb SINE Alu 137 311 -1 891 289 107 63 chr3 130584367 130585149 -96939429 + L2 LINE L2 2485 3312 -1 279 0 0 0 chr3 130585976 130586007 -96938571 + (TG)n Simple_repeat Simple_repeat 2 32 0 1987 180 12 36 chr3 130586007 130586234 -96938344 - MSTB LTR MaLR -7 421 205 1654 197 0 29 chr3 130586234 130586543 -96938035 - AluJb SINE Alu -12 300 1 1987 180 12 36 chr3 130586543 130586740 -96937838 - MSTB LTR MaLR -223 205 5 6970 59 6 0 chr3 130587116 130588352 -96936226 - L1PA7 LINE L1 0 6154 4915 1967 73 3 104 chr3 130588354 130588711 -96935867 + L1PA7 LINE L1 4603 4923 -1223 275 254 0 0 chr3 130588881 130588940 -96935638 - L2 LINE L2 0 3272 3214 315 235 235 0 chr3 130591656 130591758 -96932820 - L2 LINE L2 0 3313 3188 194 105 26 0 chr3 130592055 130592093 -96932485 + A-rich Low_complexity Low_complexity 3 41 0 1895 117 0 0 chr3 130592545 130592801 -96931777 - AluSq SINE Alu -56 257 2 452 330 51 17 chr3 130594977 130595213 -96929365 - MIR SINE MIR 0 262 20 10350 220 60 59 chr3 130596095 130596401 -96928177 - L1MC3 LINE L1 -16 8049 7745 279 0 0 0 chr3 130596401 130596432 -96928146 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 10350 220 60 59 chr3 130596432 130601890 -96922688 - L1MC3 LINE L1 -320 7745 2297 1924 115 66 11 chr3 130601890 130602176 -96922402 + AluSx SINE Alu 1 302 -10 10350 220 60 59 chr3 130602176 130604348 -96920230 - L1MC3 LINE L1 -5768 2297 146 4200 112 43 0 chr3 130604348 130604974 -96919604 + MER39B LTR ERV1 1 653 0 10350 220 60 59 chr3 130604974 130605086 -96919492 - L1MC3 LINE L1 -7919 146 36 854 102 44 0 chr3 130605175 130605312 -96919266 + L1MA3 LINE L1 6163 6305 0 558 271 42 31 chr3 130605472 130605664 -96918914 - L2 LINE L2 0 3313 3120 4684 48 2 5 chr3 130605666 130606265 -96918313 - L1PA4 LINE L1 -937 5209 4613 * 6384 34 0 3 chr3 130606253 130607061 -96917517 + L1PA4 LINE L1 5213 6018 -137 1616 132 58 8 chr3 130607692 130607935 -96916643 + AluSg SINE Alu 56 310 0 362 369 68 23 chr3 130609045 130609443 -96915135 + L2 LINE L2 1959 2374 -940 487 298 36 61 chr3 130610009 130610288 -96914290 + LTR16C LTR ERVL 211 482 -9 1283 188 5 9 chr3 130610386 130610610 -96913968 + MLT1C LTR MaLR 245 467 0 793 299 115 33 chr3 130611340 130612132 -96912446 + L1ME4a LINE L1 5258 6114 -7 225 370 0 0 chr3 130612803 130612876 -96911702 + MLT1K LTR MaLR 147 219 -369 2544 10 0 0 chr3 130613049 130613346 -96911232 - L1PA2 LINE L1 -601 5554 5258 5358 19 0 0 chr3 130613346 130613958 -96910620 + L1PA2 LINE L1 5540 6155 0 3095 173 31 7 chr3 130613981 130614530 -96910048 - MER68 LTR ERV1 0 562 1 558 292 27 66 chr3 130614592 130614849 -96909729 - LTR16C LTR ERVL -244 247 1 475 293 49 89 chr3 130614860 130615208 -96909370 + MLT1K LTR MaLR 255 588 0 537 189 15 15 chr3 130615395 130615527 -96909051 + MER58 DNA MER1_type 45 176 -2244 652 205 0 13 chr3 130615528 130615679 -96908899 + MER58 DNA MER1_type 2270 2418 -2 234 330 46 18 chr3 130616840 130616949 -96907629 - L2 LINE L2 -5 3267 3156 2598 76 3 0 chr3 130617141 130617483 -96907095 + L1PA7 LINE L1 5809 6151 -3 802 249 19 58 chr3 130617486 130617747 -96906831 - MIR SINE MIR 0 262 12 2750 198 12 2 chr3 130618200 130618715 -96905863 - MLT2B1 LTR ERVL 0 520 1 195 42 0 0 chr3 130618920 130618944 -96905634 + (CA)n Simple_repeat Simple_repeat 2 25 0 * 252 0 0 0 chr3 130618943 130618971 -96905607 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 378 0 0 0 chr3 130618970 130619012 -96905566 + (TA)n Simple_repeat Simple_repeat 1 42 0 427 39 64 0 chr3 130619089 130619167 -96905411 + (TA)n Simple_repeat Simple_repeat 1 83 0 201 167 0 0 chr3 130619167 130619203 -96905375 - MIR SINE MIR -144 118 83 422 167 12 0 chr3 130619203 130619287 -96905291 + (TA)n Simple_repeat Simple_repeat 2 86 0 438 323 111 14 chr3 130619287 130619655 -96904923 - L2 LINE L2 -1092 2222 1819 1969 189 6 9 chr3 130620640 130620984 -96903594 + MER7A DNA MER2_type 1 341 -5 212 162 0 0 chr3 130621023 130621060 -96903518 + (TATG)n Simple_repeat Simple_repeat 4 40 0 461 189 0 0 chr3 130621251 130621325 -96903253 + AluJb SINE Alu 181 254 -58 427 135 40 0 chr3 130622596 130622670 -96901908 + MER58B DNA MER1_type 240 316 -25 2990 111 2 7 chr3 130622672 130623104 -96901474 - MER57B LTR ERV1 -4 430 1 241 296 0 0 chr3 130623247 130623301 -96901277 - L3 LINE CR1 -9 1568 1515 302 327 177 43 chr3 130624597 130624897 -96899681 + L3 LINE CR1 1237 1576 -1 573 285 151 86 chr3 130625159 130625725 -96898853 - L2 LINE L2 -4 3309 2697 1831 142 29 29 chr3 130625725 130626034 -96898544 + AluJo SINE Alu 4 312 0 573 285 151 86 chr3 130626034 130626165 -96898413 - L2 LINE L2 -616 2697 2576 297 51 0 0 chr3 130626303 130626342 -96898236 + (TG)n Simple_repeat Simple_repeat 2 40 0 26 0 0 0 chr3 130626481 130626507 -96898071 + AT_rich Low_complexity Low_complexity 1 26 0 273 300 0 0 chr3 130627030 130627090 -96897488 + L2 LINE L2 3213 3272 0 420 75 30 0 chr3 130627188 130627255 -96897323 + L1ME1 LINE L1 5759 5827 -339 4495 175 20 35 chr3 130627260 130628175 -96896403 + L1MB3 LINE L1 5276 6176 -7 866 184 85 52 chr3 130628197 130628488 -96896090 + L1MB8 LINE L1 5824 6102 -72 296 294 131 40 chr3 130628636 130628818 -96895760 - MIR SINE MIR -51 211 16 814 242 86 37 chr3 130630188 130630667 -96893911 - MLT1E LTR MaLR -2 591 21 493 275 160 52 chr3 130631189 130631458 -96893120 + L3 LINE CR1 1265 1562 -15 24 0 0 0 chr3 130631520 130631544 -96893034 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr3 130634440 130634469 -96890109 + AT_rich Low_complexity Low_complexity 1 29 0 234 62 0 0 chr3 130635503 130635535 -96889043 + (CA)n Simple_repeat Simple_repeat 2 33 0 227 299 30 0 chr3 130637279 130637346 -96887232 - L3 LINE CR1 0 1577 1509 450 0 0 0 chr3 130638553 130638603 -96885975 + (CA)n Simple_repeat Simple_repeat 1 50 0 249 335 144 30 chr3 130638614 130638781 -96885797 - MIR3 SINE MIR -21 187 2 327 300 110 51 chr3 130640171 130640408 -96884170 - HAL1 LINE L1 -14 2493 2243 314 160 32 11 chr3 130640513 130640607 -96883971 + (TCTA)n Simple_repeat Simple_repeat 1 96 0 261 291 8 60 chr3 130641537 130641603 -96882975 + L2 LINE L2 3193 3252 -61 738 238 38 16 chr3 130641603 130641788 -96882790 + MER5A DNA MER1_type 1 189 0 261 291 8 60 chr3 130641788 130641838 -96882740 + L2 LINE L2 3252 3303 -10 183 253 76 63 chr3 130644684 130644763 -96879815 + L2 LINE L2 3234 3313 0 597 234 53 30 chr3 130645869 130646062 -96878516 + MLT1J2 LTR MaLR 2 206 -203 402 318 32 73 chr3 130647701 130648044 -96876534 + MLT1I LTR MaLR 75 403 -6 1398 223 29 74 chr3 130648773 130648962 -96875616 + LTR40b LTR ERVL 1 197 -265 2228 127 34 8 chr3 130648962 130649317 -96875261 + THE1B LTR MaLR 1 364 0 10185 109 31 43 chr3 130649317 130650915 -96873663 + THE1B-int LTR MaLR 1 1580 0 2295 132 28 3 chr3 130650915 130651270 -96873308 + THE1B LTR MaLR 1 364 0 1398 223 29 74 chr3 130651270 130651562 -96873016 + LTR40b LTR ERVL 194 462 0 222 217 159 14 chr3 130651699 130651768 -96872810 + L2 LINE L2 3194 3272 0 358 243 0 0 chr3 130653635 130653705 -96870873 - L2 LINE L2 0 3272 3203 330 26 0 0 chr3 130654180 130654219 -96870359 + (TG)n Simple_repeat Simple_repeat 2 40 0 268 324 185 32 chr3 130654298 130654644 -96869934 - L2 LINE L2 -706 2608 2210 558 272 146 0 chr3 130654699 130654857 -96869721 - MER5A DNA MER1_type 0 189 9 309 314 71 50 chr3 130654982 130655265 -96869313 - L2 LINE L2 -1245 2069 1781 2277 185 62 12 chr3 130655399 130655880 -96868698 + MLT1D LTR MaLR 1 505 0 1597 151 164 26 chr3 130655913 130656304 -96868274 - MER39 LTR ERV1 -3 704 260 232 260 150 39 chr3 130656386 130656513 -96868065 + MIR SINE MIR 76 216 -46 196 359 42 84 chr3 130657981 130658123 -96866455 - L2 LINE L2 -94 3178 3043 1824 171 86 3 chr3 130659507 130659869 -96864709 - MSTA LTR MaLR 0 428 37 1821 152 25 0 chr3 130659869 130660192 -96864386 + MST-int LTR MaLR 135 465 -1186 260 108 0 0 chr3 130660195 130660232 -96864346 - MSTA LTR MaLR -391 37 1 7754 165 44 3 chr3 130660232 130661650 -96862928 - MSTA-int LTR MaLR 0 1651 175 2014 146 79 8 chr3 130661660 130662038 -96862540 - MSTA LTR MaLR -21 407 3 406 312 7 43 chr3 130662076 130662217 -96862361 - MIR SINE MIR -57 151 16 197 363 18 44 chr3 130663131 130663244 -96861334 + MIR SINE MIR 22 131 -77 491 245 71 39 chr3 130663412 130663567 -96861011 + MER63A DNA MER1_type 50 209 -1 1839 142 3 46 chr3 130664090 130664415 -96860163 + AluSx SINE Alu 1 311 -1 1866 156 6 83 chr3 130665009 130665508 -96859070 + MER89 LTR ERV1 1 559 0 441 0 0 0 chr3 130665564 130665613 -96858965 + (CA)n Simple_repeat Simple_repeat 2 50 0 2095 152 0 0 chr3 130665823 130666132 -96858446 + AluSx SINE Alu 1 309 -3 600 297 130 34 chr3 130667228 130667636 -96856942 - MLT1J2 LTR MaLR 0 450 4 304 267 0 59 chr3 130668433 130668534 -96856044 - L2 LINE L2 -2 3270 3176 476 305 113 14 chr3 130669642 130669855 -96854723 + MIR SINE MIR 15 248 -14 3930 121 2 2 chr3 130670708 130671302 -96853276 - L1PA13 LINE L1 -19 6795 6202 183 80 0 0 chr3 130671303 130671328 -96853250 + (T)n Simple_repeat Simple_repeat 1 25 0 1276 30 0 18 chr3 130671344 130671509 -96853069 - L1PA5 LINE L1 0 6154 5993 18378 180 27 20 chr3 130671509 130671632 -96852946 - L1PA13 LINE L1 -597 6215 6094 2337 114 27 29 chr3 130671632 130672008 -96852570 + THE1C LTR MaLR 1 375 0 18378 180 27 20 chr3 130672008 130673136 -96851442 - L1PA13 LINE L1 -718 6094 4976 2738 3 0 3 chr3 130673136 130673436 -96851142 - AluY SINE Alu -12 299 1 18378 180 27 20 chr3 130673436 130678348 -96846230 - L1PA13 LINE L1 -1836 4976 15 224 220 0 0 chr3 130678374 130678424 -96846154 - L2 LINE L2 -1 3312 3263 219 103 73 29 chr3 130678628 130678696 -96845882 + (TA)n Simple_repeat Simple_repeat 2 72 0 21 36 0 0 chr3 130679189 130679217 -96845361 + AT_rich Low_complexity Low_complexity 1 28 0 794 301 228 35 chr3 130679234 130679922 -96844656 + L3 LINE CR1 684 1504 -73 2021 142 7 0 chr3 130680030 130680326 -96844252 + AluSx SINE Alu 1 298 -14 660 255 87 14 chr3 130680478 130680784 -96843794 - L1MC4 LINE L1 -145 7897 7437 910 194 30 30 chr3 130680792 130680993 -96843585 - MER3 DNA MER1_type 0 209 9 431 252 0 47 chr3 130681007 130681134 -96843444 - L1MC4 LINE L1 -508 7534 7414 340 97 32 0 chr3 130681300 130681362 -96843216 + (TA)n Simple_repeat Simple_repeat 2 65 0 342 0 0 0 chr3 130681362 130681400 -96843178 + (GA)n Simple_repeat Simple_repeat 2 39 0 584 264 11 29 chr3 130682100 130682274 -96842304 + MIR SINE MIR 76 246 -16 219 393 41 7 chr3 130682353 130682498 -96842080 - MIR3 SINE MIR -4 204 55 221 243 86 14 chr3 130682553 130682623 -96841955 - L2 LINE L2 -17 3296 3222 188 300 62 25 chr3 130683547 130683627 -96840951 - L2 LINE L2 0 3272 3190 254 325 6 141 chr3 130683760 130683923 -96840655 - L2 LINE L2 -94 3178 3038 14110 133 27 21 chr3 130684286 130686690 -96837888 - Tigger1 DNA MER2_type 0 2418 1 316 208 188 45 chr3 130686847 130687001 -96837577 - L1MC/D LINE L1 -2182 5626 5451 251 261 43 48 chr3 130687189 130687419 -96837159 - L1MC/D LINE L1 -1517 4629 4401 208 161 32 0 chr3 130687519 130687581 -96836997 + (TA)n Simple_repeat Simple_repeat 2 65 0 780 264 81 19 chr3 130687666 130688289 -96836289 - HAL1 LINE L1 -551 1956 1203 452 275 158 18 chr3 130688489 130688711 -96835867 + MIR SINE MIR 9 261 -1 246 315 99 18 chr3 130689644 130689755 -96834823 + MIR SINE MIR 23 142 -66 1614 170 0 55 chr3 130690516 130690827 -96833751 - AluJb SINE Alu -18 294 1 355 247 0 0 chr3 130691406 130691479 -96833099 - MIR SINE MIR -10 252 180 213 279 148 8 chr3 130691782 130691904 -96832674 - MIR SINE MIR -19 243 105 2841 117 27 0 chr3 130691908 130692320 -96832258 + MSTC LTR MaLR 2 424 -4 25 0 0 0 chr3 130693233 130693258 -96831320 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3 130693825 130693848 -96830730 + AT_rich Low_complexity Low_complexity 1 23 0 420 290 77 71 chr3 130693910 130694248 -96830330 - L1ME4a LINE L1 -182 5939 5600 357 286 21 50 chr3 130694331 130694471 -96830107 - MLT1K LTR MaLR -15 573 438 507 246 32 0 chr3 130694476 130694602 -96829976 - MIR SINE MIR 0 262 133 477 318 105 43 chr3 130694603 130694974 -96829604 - MLT1K LTR MaLR -162 426 33 313 268 28 78 chr3 130696781 130696923 -96827655 - L2 LINE L2 -43 3270 3136 288 274 0 0 chr3 130697043 130697105 -96827473 - L2 LINE L2 -14 3299 3238 630 339 116 34 chr3 130697372 130698213 -96826365 - L2 LINE L2 -2 3311 2412 192 303 95 59 chr3 130698439 130698660 -96825918 + L2 LINE L2 2829 3057 -215 524 361 6 6 chr3 130698769 130698952 -96825626 + MER5A DNA MER1_type 7 189 0 189 265 196 10 chr3 130698952 130699049 -96825529 + L2 LINE L2 3153 3268 -4 818 302 182 9 chr3 130701189 130701780 -96822798 - L2 LINE L2 0 3313 2623 1485 123 8 4 chr3 130701780 130702015 -96822563 - MLT1A1 LTR MaLR 0 365 130 2037 265 251 16 chr3 130702034 130702959 -96821619 - L2 LINE L2 -1558 1756 615 309 304 124 37 chr3 130704584 130704745 -96819833 + MER5A DNA MER1_type 9 183 -6 344 278 83 0 chr3 130704831 130704939 -96819639 - L2 LINE L2 0 3313 3197 192 321 138 18 chr3 130705006 130705115 -96819463 - L2 LINE L2 -4 3309 3188 304 271 139 16 chr3 130706083 130706212 -96818366 + MIR SINE MIR 94 238 -24 582 250 35 0 chr3 130707049 130707193 -96817385 - MLT1J1 LTR MaLR -297 149 1 209 203 290 0 chr3 130707410 130707479 -96817099 + MER5A DNA MER1_type 21 109 -80 2215 118 3 0 chr3 130710058 130710364 -96814214 + AluSp SINE Alu 1 307 -6 709 326 0 0 chr3 130710382 130710603 -96813975 + MIR SINE MIR 12 232 -30 211 239 0 0 chr3 130711037 130711083 -96813495 + T-rich Low_complexity Low_complexity 1 46 0 2188 70 0 61 chr3 130711521 130711833 -96812745 + AluY SINE Alu 1 293 -18 8521 155 20 25 chr3 130711858 130712289 -96812289 + L1MA5A LINE L1 3535 3967 -2330 2305 113 0 0 chr3 130712289 130712599 -96811979 + AluSg SINE Alu 1 310 0 8521 155 20 25 chr3 130712599 130713124 -96811454 + L1MA5A LINE L1 3967 4493 -1804 2054 140 45 36 chr3 130713124 130713481 -96811097 + THE1B LTR MaLR 5 364 0 8521 155 20 25 chr3 130713481 130714510 -96810068 + L1MA5A LINE L1 4493 5501 -796 289 0 0 47 chr3 130714510 130714553 -96810025 + (CAA)n Simple_repeat Simple_repeat 3 43 0 8521 155 20 25 chr3 130714553 130715344 -96809234 + L1MA5A LINE L1 5501 6294 -3 2226 196 42 24 chr3 130716371 130716482 -96808096 + L1MB8 LINE L1 5602 5710 -468 2111 150 10 39 chr3 130716482 130716868 -96807710 - THE1C LTR MaLR 0 375 1 2226 196 42 24 chr3 130716868 130717307 -96807271 + L1MB8 LINE L1 5710 6162 -16 898 270 60 8 chr3 130717363 130717611 -96806967 + MIR SINE MIR 2 262 0 1776 167 3 29 chr3 130718259 130718571 -96806007 + AluJb SINE Alu 1 304 -8 207 0 0 0 chr3 130718573 130718596 -96805982 + (CA)n Simple_repeat Simple_repeat 2 24 0 441 250 45 0 chr3 130718923 130719035 -96805543 - L2 LINE L2 -4 3309 3193 192 111 0 0 chr3 130719463 130719499 -96805079 + (T)n Simple_repeat Simple_repeat 1 36 0 3503 7 0 0 chr3 130719501 130719912 -96804666 - L1HS LINE L1 -2 6153 5743 24 0 0 0 chr3 130720183 130720207 -96804371 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr3 130720459 130720503 -96804075 + AT_rich Low_complexity Low_complexity 1 44 0 196 310 87 43 chr3 130721629 130721813 -96802765 - L2 LINE L2 -701 2613 2422 379 322 101 29 chr3 130722071 130722279 -96802299 + MIR SINE MIR 11 233 -29 409 264 96 28 chr3 130722472 130722650 -96801928 - MIR3 SINE MIR -3 205 16 236 277 43 53 chr3 130723415 130723509 -96801069 + L2 LINE L2 3167 3259 -13 2060 121 7 3 chr3 130723641 130723938 -96800640 + AluSx SINE Alu 1 298 -14 646 275 15 18 chr3 130724081 130724307 -96800271 - MIR SINE MIR 0 262 37 1511 194 3 14 chr3 130724850 130725139 -96799439 + AluJb SINE Alu 1 286 -26 306 73 0 0 chr3 130725141 130725182 -96799396 + (CA)n Simple_repeat Simple_repeat 1 41 0 1016 189 63 15 chr3 130726185 130726391 -96798187 + AluJb SINE Alu 85 300 -12 324 256 7 117 chr3 130726391 130726528 -96798050 + MER5A DNA MER1_type 68 189 0 4071 125 12 62 chr3 130728382 130729109 -96795469 + LTR8 LTR ERV1 1 691 0 741 256 36 52 chr3 130729240 130729490 -96795088 - MIR SINE MIR -10 252 7 237 237 26 26 chr3 130729940 130730016 -96794562 + HsTC2 DNA Tc2 4 79 -1819 3324 235 96 27 chr3 130730266 130730304 -96794274 + L1MC4 LINE L1 6771 6805 -1237 477 0 0 0 chr3 130730304 130730357 -96794221 + (CA)n Simple_repeat Simple_repeat 2 54 0 3324 235 96 27 chr3 130730357 130731505 -96793073 + L1MC4 LINE L1 6805 8039 -3 546 199 46 8 chr3 130732818 130732949 -96791629 + L1MC4 LINE L1 7200 7335 -707 336 318 39 23 chr3 130733110 130733239 -96791339 - L2 LINE L2 -6 3307 3177 246 194 57 121 chr3 130733599 130733723 -96790855 + MIR SINE MIR 101 216 -46 509 273 36 0 chr3 130733758 130733897 -96790681 - MIR SINE MIR 0 262 119 742 294 30 9 chr3 130735129 130735360 -96789218 - MIR SINE MIR -26 236 1 561 254 0 30 chr3 130736506 130736640 -96787938 + L2 LINE L2 3183 3312 -1 327 297 36 36 chr3 130736928 130737039 -96787539 - L2 LINE L2 0 3313 3203 259 307 164 21 chr3 130737366 130737506 -96787072 + MIR SINE MIR 23 182 -80 181 316 59 66 chr3 130737719 130737871 -96786707 + MER5A DNA MER1_type 11 161 -28 537 216 65 62 chr3 130738998 130739289 -96785289 + MLT1H1 LTR MaLR 224 546 -9 2081 208 20 46 chr3 130739420 130739763 -96784815 - MER74A LTR ERVL -70 488 161 1528 204 30 38 chr3 130739763 130740135 -96784443 + MLT1A2 LTR MaLR 4 372 -2 2081 208 20 46 chr3 130740135 130740292 -96784286 - MER74A LTR ERVL -397 161 1 270 246 0 0 chr3 130740477 130740538 -96784040 + MLT1-int LTR MaLR 424 484 -887 367 240 0 10 chr3 130741612 130741716 -96782862 + MLT1J LTR MaLR 1 103 -439 356 238 107 48 chr3 130741929 130742049 -96782529 + MLT1H1 LTR MaLR 378 512 -43 768 256 108 5 chr3 130742049 130742252 -96782326 + MER58A DNA MER1_type 1 224 0 356 238 107 48 chr3 130742252 130742299 -96782279 + MLT1H1 LTR MaLR 512 555 0 256 317 21 7 chr3 130742349 130742491 -96782087 + GA-rich Low_complexity Low_complexity 4 147 0 560 267 61 88 chr3 130742722 130743130 -96781448 + MLT1J LTR MaLR 113 509 -2 1608 259 90 68 chr3 130743588 130744046 -96780532 - MER21B LTR ERV1 -79 784 301 2366 103 0 0 chr3 130744046 130744348 -96780230 + AluSq SINE Alu 1 302 -11 1608 259 90 68 chr3 130744348 130744656 -96779922 - MER21B LTR ERV1 -562 301 1 2590 84 26 0 chr3 130744779 130745125 -96779453 + THE1A LTR MaLR 1 355 0 1057 117 56 61 chr3 130745245 130745458 -96779120 - THE1B LTR MaLR -35 329 118 2145 131 3 23 chr3 130745578 130745921 -96778657 + MER1B DNA MER1_type 2 337 0 348 127 0 0 chr3 130746363 130746418 -96778160 + (CA)n Simple_repeat Simple_repeat 1 55 0 247 288 43 64 chr3 130749477 130749710 -96774868 + MLT1J LTR MaLR 110 337 -174 711 227 0 0 chr3 130749882 130750010 -96774568 - FLAM_A SINE Alu -5 128 1 211 324 88 10 chr3 130750314 130750416 -96774162 + L3 LINE CR1 279 388 -1189 289 309 0 12 chr3 130750439 130750520 -96774058 - L2 LINE L2 -2 3270 3191 325 317 237 46 chr3 130750908 130751936 -96772642 - L2 LINE L2 -546 2768 1544 682 304 56 77 chr3 130752350 130752781 -96771797 + L3 LINE CR1 430 851 -726 5889 145 11 5 chr3 130752906 130754498 -96770080 - L1PB1 LINE L1 0 6151 4549 1842 157 50 10 chr3 130754502 130754885 -96769693 - MER63B DNA MER1_type -37 399 2 207 0 0 0 chr3 130754919 130754942 -96769636 + (CA)n Simple_repeat Simple_repeat 2 24 0 30 0 0 0 chr3 130754971 130755001 -96769577 + AT_rich Low_complexity Low_complexity 1 30 0 418 322 120 47 chr3 130755056 130755398 -96769180 + L3 LINE CR1 1079 1445 -132 2051 164 70 24 chr3 130755932 130756347 -96768231 - Tigger2a DNA MER2_type 0 434 1 232 363 0 0 chr3 130757420 130757500 -96767078 + CT-rich Low_complexity Low_complexity 3 82 0 3172 242 84 5 chr3 130757553 130758509 -96766069 + MER69B DNA AcHobo 1 1031 -195 4309 113 7 10 chr3 130758509 130759218 -96765360 - L1PA10 LINE L1 -1241 4905 4199 5940 89 24 20 chr3 130759219 130759790 -96764788 + L1PA10 LINE L1 4904 5471 -697 2356 90 0 0 chr3 130759790 130760089 -96764489 + AluY SINE Alu 1 299 -12 5940 89 24 20 chr3 130760089 130760774 -96763804 + L1PA10 LINE L1 5471 6168 0 271 253 0 27 chr3 130760890 130760965 -96763613 + MER69B DNA AcHobo 1154 1226 0 24 67 0 0 chr3 130760988 130761033 -96763545 + AT_rich Low_complexity Low_complexity 1 45 0 397 343 125 58 chr3 130761772 130762189 -96762389 - L2 LINE L2 -10 3262 2818 333 343 17 44 chr3 130762229 130762410 -96762168 + MER5A DNA MER1_type 7 182 -7 419 364 68 38 chr3 130762428 130762901 -96761677 - L2 LINE L2 -559 2755 2269 1442 213 39 74 chr3 130764300 130764501 -96760077 + MLT1C LTR MaLR 1 208 -259 2027 159 0 3 chr3 130764501 130764809 -96759769 + AluSx SINE Alu 1 307 -5 1442 213 39 74 chr3 130764809 130765091 -96759487 + MLT1C LTR MaLR 208 467 0 1251 204 88 55 chr3 130765519 130765971 -96758607 + MLT1C LTR MaLR 1 467 0 1347 152 4 86 chr3 130766013 130766316 -96758262 + AluJo SINE Alu 43 312 0 25 0 0 0 chr3 130766722 130766747 -96757831 + AT_rich Low_complexity Low_complexity 1 25 0 335 350 49 17 chr3 130766838 130767115 -96757463 + L3 LINE CR1 1042 1369 -208 499 261 87 0 chr3 130767228 130767380 -96757198 + MIR SINE MIR 39 206 -56 475 272 68 7 chr3 130768368 130768515 -96756063 - MIR SINE MIR -38 224 69 264 203 26 26 chr3 130769429 130769582 -96754996 + GA-rich Low_complexity Low_complexity 1 153 0 195 129 0 0 chr3 130769642 130769673 -96754905 + (GA)n Simple_repeat Simple_repeat 1 31 0 248 326 10 10 chr3 130769684 130769782 -96754796 + GA-rich Low_complexity Low_complexity 3 100 0 216 0 0 0 chr3 130771309 130771333 -96753245 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 240 111 0 0 chr3 130773216 130773252 -96751326 + (T)n Simple_repeat Simple_repeat 1 36 0 304 222 97 0 chr3 130774011 130774083 -96750495 + MIR SINE MIR 70 148 -60 732 349 108 44 chr3 130774247 130775447 -96749131 + L2 LINE L2 1472 2747 -567 258 184 0 0 chr3 130776991 130777040 -96747538 + L2 LINE L2 3265 3313 0 437 266 9 0 chr3 130777367 130777480 -96747098 + MIR SINE MIR 47 160 -102 2031 134 17 0 chr3 130777722 130778020 -96746558 - AluSx SINE Alu -9 303 1 386 130 0 13 chr3 130779289 130779366 -96745212 + (GA)n Simple_repeat Simple_repeat 1 76 0 1775 166 21 7 chr3 130780596 130780905 -96743673 + AluJo SINE Alu 1 312 0 22 0 0 0 chr3 130782239 130782261 -96742317 + AT_rich Low_complexity Low_complexity 1 22 0 936 153 38 67 chr3 130782498 130782707 -96741871 + MER105 DNA DNA 1 203 -1 328 323 73 8 chr3 130782883 130783007 -96741571 + MIR3 SINE MIR 54 185 -23 1077 329 49 70 chr3 130783491 130784579 -96739999 + L2 LINE L2 1943 3005 -308 436 183 46 0 chr3 130786991 130787122 -96737456 + CT-rich Low_complexity Low_complexity 2 138 0 864 146 23 0 chr3 130787137 130787267 -96737311 - FLAM_C SINE Alu 0 133 1 315 349 11 11 chr3 130787437 130787612 -96736966 + (TA)n Simple_repeat Simple_repeat 1 175 0 297 0 0 0 chr3 130787613 130787646 -96736932 + (CA)n Simple_repeat Simple_repeat 1 33 0 385 297 21 62 chr3 130788435 130788580 -96735998 - L2 LINE L2 -1 3271 3133 241 206 206 22 chr3 130788786 130788878 -96735700 + MIR SINE MIR 154 262 0 244 219 0 0 chr3 130789604 130789645 -96734933 + L2 LINE L2 2586 2626 -688 827 248 100 58 chr3 130789651 130790010 -96734568 + L2 LINE L2 2936 3309 -4 1637 140 23 92 chr3 130793096 130793488 -96731090 + MLT1A1 LTR MaLR 1 365 0 295 40 20 20 chr3 130793822 130793872 -96730706 + (CAAAAA)n Simple_repeat Simple_repeat 5 54 0 312 324 178 43 chr3 130794558 130795165 -96729413 - L2 LINE L2 -841 2473 1757 1264 216 101 27 chr3 130795165 130795503 -96729075 - MLT1A1 LTR MaLR -2 363 1 312 324 178 43 chr3 130795503 130795596 -96728982 - L2 LINE L2 -1557 1757 1678 768 206 0 0 chr3 130795797 130795928 -96728650 + FLAM_A SINE Alu 1 131 -2 210 71 0 0 chr3 130795933 130795961 -96728617 + (GAAAA)n Simple_repeat Simple_repeat 3 30 0 1598 176 42 26 chr3 130796949 130797256 -96727322 + AluJo SINE Alu 1 312 0 1609 179 9 61 chr3 130798459 130798788 -96725790 - AluJo SINE Alu 0 312 1 2189 129 0 7 chr3 130799260 130799569 -96725009 + AluSx SINE Alu 1 307 -5 213 242 81 16 chr3 130799714 130799776 -96724802 - MIR3 SINE MIR -3 205 140 226 345 73 36 chr3 130802465 130802630 -96721948 + MER5A DNA MER1_type 19 189 0 384 298 65 0 chr3 130803554 130803678 -96720900 - L2 LINE L2 0 3272 3141 712 143 32 24 chr3 130803829 130803955 -96720623 - FLAM_C SINE Alu -16 127 1 21 0 0 0 chr3 130805696 130805717 -96718861 + AT_rich Low_complexity Low_complexity 1 21 0 301 243 40 0 chr3 130806542 130806616 -96717962 - MIR3 SINE MIR -43 165 89 222 244 35 47 chr3 130806828 130806914 -96717664 - MER5A DNA MER1_type -79 110 26 207 0 0 0 chr3 130807572 130807595 -96716983 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2367 63 3 0 chr3 130807598 130807884 -96716694 - AluY SINE Alu -23 288 2 582 208 58 71 chr3 130810050 130810204 -96714374 + MIR SINE MIR 49 200 -62 205 162 0 27 chr3 130810244 130810281 -96714297 + MIR SINE MIR 199 234 -28 550 355 21 0 chr3 130810519 130810708 -96713870 - MIR SINE MIR -46 216 24 387 0 0 0 chr3 130812087 130812130 -96712448 + (TG)n Simple_repeat Simple_repeat 1 43 0 827 279 65 16 chr3 130812626 130812873 -96711705 - MIR SINE MIR -2 260 2 220 344 99 15 chr3 130812900 130813031 -96711547 + MIR SINE MIR 63 204 -58 343 323 85 28 chr3 130813219 130813467 -96711111 - L2 LINE L2 -12 3301 3040 1735 156 4 0 chr3 130814523 130814761 -96709817 - AluSp SINE Alu -14 299 61 267 299 47 19 chr3 130814917 130815024 -96709554 - L2 LINE L2 -225 3047 2938 260 281 50 50 chr3 130815437 130815558 -96709020 - MIR SINE MIR -56 206 86 1958 137 13 42 chr3 130815827 130816134 -96708444 - AluSx SINE Alu -14 298 1 202 241 17 17 chr3 130816224 130816282 -96708296 + (TATATG)n Simple_repeat Simple_repeat 6 63 0 261 271 17 0 chr3 130816323 130816382 -96708196 + L2 LINE L2 3213 3272 0 383 246 104 7 chr3 130816386 130816560 -96708018 + MIR SINE MIR 53 249 -13 207 152 0 0 chr3 130817556 130817602 -96706976 + CT-rich Low_complexity Low_complexity 2 47 0 324 0 0 0 chr3 130817603 130817639 -96706939 + (CA)n Simple_repeat Simple_repeat 2 37 0 399 324 54 7 chr3 130818590 130818738 -96705840 - MER5A DNA MER1_type -19 170 16 1380 213 66 0 chr3 130818967 130819287 -96705291 - MER58B DNA MER1_type 0 341 1 207 184 26 0 chr3 130819566 130819604 -96704974 - L2 LINE L2 -16 3297 3259 348 103 0 0 chr3 130819900 130819958 -96704620 + (TC)n Simple_repeat Simple_repeat 1 58 0 362 268 0 0 chr3 130823071 130823153 -96701425 + MIR SINE MIR 58 139 -123 585 312 0 11 chr3 130823463 130823649 -96700929 - MER5A DNA MER1_type -3 186 3 181 167 37 0 chr3 130825620 130825674 -96698904 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 384 217 0 11 chr3 130827717 130827809 -96696769 - MER117 DNA MER1_type -79 118 28 776 40 0 10 chr3 130828003 130828104 -96696474 + (GGAA)n Simple_repeat Simple_repeat 4 103 0 2170 157 3 29 chr3 130828998 130829214 -96695364 - MLT1A1 LTR MaLR 0 365 162 2279 118 3 6 chr3 130829214 130829527 -96695051 - AluSx SINE Alu 0 312 1 2170 157 3 29 chr3 130829527 130829685 -96694893 - MLT1A1 LTR MaLR -203 162 1 302 279 81 0 chr3 130829690 130829776 -96694802 - L2 LINE L2 -8 3264 3172 1926 61 0 0 chr3 130831349 130831612 -96692966 + AluY SINE Alu 69 331 0 306 271 8 39 chr3 130832170 130832299 -96692279 + CT-rich Low_complexity Low_complexity 6 130 0 544 326 27 8 chr3 130832830 130833125 -96691453 + LTR16C LTR ERVL 191 457 0 431 335 89 10 chr3 130834316 130834519 -96690059 - MIR SINE MIR -25 237 19 2144 112 3 3 chr3 130834588 130834882 -96689696 + AluSq SINE Alu 1 294 -19 377 269 62 46 chr3 130834895 130835025 -96689553 - MIR SINE MIR -51 211 80 243 250 17 17 chr3 130835856 130835916 -96688662 + L2 LINE L2 3209 3268 -4 205 280 0 40 chr3 130836888 130836938 -96687640 + L2 LINE L2 3248 3295 -18 1446 168 0 29 chr3 130837394 130837638 -96686940 + AluJb SINE Alu 68 304 -8 207 0 0 0 chr3 130837640 130837663 -96686915 + (CA)n Simple_repeat Simple_repeat 2 24 0 441 250 45 0 chr3 130837990 130838102 -96686476 - L2 LINE L2 -4 3309 3193 192 111 0 0 chr3 130838530 130838566 -96686012 + (T)n Simple_repeat Simple_repeat 1 36 0 2693 100 2 2 chr3 130838568 130838978 -96685600 - L1HS LINE L1 -2 6153 5744 24 0 0 0 chr3 130839250 130839274 -96685304 + AT_rich Low_complexity Low_complexity 1 24 0 23 68 0 0 chr3 130839526 130839570 -96685008 + AT_rich Low_complexity Low_complexity 1 44 0 307 314 0 66 chr3 130840717 130840854 -96683724 + MIR3 SINE MIR 34 161 -47 414 154 10 29 chr3 130841250 130841354 -96683224 + CT-rich Low_complexity Low_complexity 2 103 0 194 91 30 0 chr3 130841797 130841830 -96682748 + GA-rich Low_complexity Low_complexity 1 34 0 1659 199 7 0 chr3 130843654 130843940 -96680638 - AluJb SINE Alu -24 288 1 2277 120 10 0 chr3 130844050 130844359 -96680219 + AluSx SINE Alu 1 312 0 338 239 0 14 chr3 130844449 130844520 -96680058 + L2 LINE L2 3237 3306 -7 234 254 0 0 chr3 130845064 130845119 -96679459 + (CTG)n Simple_repeat Simple_repeat 3 57 0 26 50 0 0 chr3 130846997 130847037 -96677541 + AT_rich Low_complexity Low_complexity 1 40 0 219 222 0 32 chr3 130847152 130847215 -96677363 + (TTTA)n Simple_repeat Simple_repeat 1 61 0 200 141 42 42 chr3 130848612 130848683 -96675895 + CT-rich Low_complexity Low_complexity 1 71 0 1904 150 13 7 chr3 130848750 130849057 -96675521 + AluJb SINE Alu 3 311 -1 438 314 65 35 chr3 130850080 130850249 -96674329 + MIR3 SINE MIR 17 190 -18 506 316 18 40 chr3 130850259 130850487 -96674091 - MIR SINE MIR 0 262 40 2103 114 25 0 chr3 130851119 130851400 -96673178 - AluSx SINE Alu -24 288 1 195 42 0 0 chr3 130851695 130851719 -96672859 + (CG)n Simple_repeat Simple_repeat 2 25 0 * 369 0 0 0 chr3 130851718 130851759 -96672819 + (CA)n Simple_repeat Simple_repeat 1 41 0 214 364 34 0 chr3 130853733 130853821 -96670757 - L2 LINE L2 -483 2831 2741 650 268 49 44 chr3 130854531 130854736 -96669842 + MER63A DNA MER1_type 1 206 -4 1910 122 14 21 chr3 130856569 130856890 -96667688 - AluSx SINE Alu 0 319 1 21 0 0 0 chr3 130856892 130856913 -96667665 + AT_rich Low_complexity Low_complexity 1 21 0 597 326 84 35 chr3 130857404 130857965 -96666613 + L2 LINE L2 2718 3306 -7 211 254 9 91 chr3 130858523 130858633 -96665945 + MIR3 SINE MIR 15 115 -93 419 288 189 5 chr3 130859017 130859208 -96665370 + MIR SINE MIR 20 245 -17 2529 77 0 0 chr3 130859315 130859626 -96664952 - AluY SINE Alu 0 311 1 196 343 140 39 chr3 130859907 130860114 -96664464 + MIR SINE MIR 21 248 -14 189 0 0 0 chr3 130862059 130862080 -96662498 + (TTA)n Simple_repeat Simple_repeat 2 22 0 186 43 0 0 chr3 130862417 130862440 -96662138 + (TTTTA)n Simple_repeat Simple_repeat 3 25 0 646 258 55 11 chr3 130863076 130863258 -96661320 - MIR SINE MIR -10 252 63 616 238 168 19 chr3 130864027 130864241 -96660337 - MIR SINE MIR -14 248 3 * 2090 264 62 38 chr3 130864241 130865009 -96659569 + L2 LINE L2 1801 2587 -727 848 260 64 110 chr3 130865009 130865384 -96659194 + L2 LINE L2 2769 3117 -196 1830 134 10 31 chr3 130865384 130865710 -96658868 - AluSq SINE Alu 0 320 1 848 260 64 110 chr3 130865710 130865898 -96658680 + L2 LINE L2 3117 3312 -1 258 32 0 0 chr3 130866551 130866582 -96657996 + (TG)n Simple_repeat Simple_repeat 2 32 0 457 47 115 0 chr3 130866587 130866735 -96657843 + (TA)n Simple_repeat Simple_repeat 2 166 0 570 40 99 0 chr3 130866749 130866901 -96657677 + (TA)n Simple_repeat Simple_repeat 2 168 0 29 0 0 0 chr3 130868322 130868351 -96656227 + AT_rich Low_complexity Low_complexity 1 29 0 2159 217 90 8 chr3 130868638 130869159 -96655419 + MER90 LTR ERV1 3 566 -9 1913 200 71 66 chr3 130871099 130871648 -96652930 - MER92C LTR ERV1 -2 552 1 535 230 252 47 chr3 130871889 130872163 -96652415 + L3 LINE CR1 1245 1574 -3 431 298 23 15 chr3 130873356 130873487 -96651091 + MIR3 SINE MIR 74 205 -3 340 261 99 28 chr3 130875446 130875588 -96648990 - MIR SINE MIR -4 258 107 264 207 17 17 chr3 130875602 130875660 -96648918 + MIR SINE MIR 197 254 -8 703 229 102 78 chr3 130875678 130875862 -96648716 - MIR SINE MIR -1 261 68 1801 160 37 3 chr3 130875862 130876162 -96648416 - AluJb SINE Alu -2 310 1 703 229 102 78 chr3 130876162 130876221 -96648357 - MIR SINE MIR -194 68 12 318 106 0 0 chr3 130876562 130876609 -96647969 + (CA)n Simple_repeat Simple_repeat 2 48 0 291 324 0 0 chr3 130876638 130876709 -96647869 - L2 LINE L2 -42 3271 3201 979 266 139 22 chr3 130877005 130877414 -96647164 - LTR16A1 LTR ERVL 0 457 1 216 0 0 0 chr3 130877512 130877536 -96647042 + (T)n Simple_repeat Simple_repeat 1 24 0 370 205 8 120 chr3 130877847 130877964 -96646614 + MER102b DNA MER1_type 232 335 -6 207 139 0 0 chr3 130878401 130878437 -96646141 + (TA)n Simple_repeat Simple_repeat 1 36 0 302 245 330 0 chr3 130878480 130878574 -96646004 - MER119 DNA MER1_type -5 578 454 306 310 35 0 chr3 130878602 130878689 -96645889 - MER119 DNA MER1_type -491 92 3 355 324 81 23 chr3 130879581 130879754 -96644824 + MIR3 SINE MIR 20 202 -6 22 0 0 0 chr3 130880696 130880718 -96643860 + AT_rich Low_complexity Low_complexity 1 22 0 405 295 33 49 chr3 130881151 130881334 -96643244 - MIR SINE MIR -50 212 33 22 0 0 0 chr3 130881739 130881761 -96642817 + AT_rich Low_complexity Low_complexity 1 22 0 206 320 40 0 chr3 130882679 130882754 -96641824 + L2 LINE L2 3236 3313 0 231 36 0 0 chr3 130883445 130883473 -96641105 + (CA)n Simple_repeat Simple_repeat 1 28 0 991 181 36 19 chr3 130883480 130883767 -96640811 - MLT1A1 LTR MaLR -9 584 1 534 258 136 0 chr3 130884498 130884653 -96639925 + MIR SINE MIR 83 258 -4 459 0 0 0 chr3 130885289 130885340 -96639238 + (TA)n Simple_repeat Simple_repeat 2 52 0 198 0 0 0 chr3 130885341 130885363 -96639215 + (GA)n Simple_repeat Simple_repeat 2 23 0 373 353 0 0 chr3 130885590 130885692 -96638886 + MIR SINE MIR 45 146 -62 274 387 16 8 chr3 130885702 130885826 -96638752 - L2 LINE L2 0 3272 3148 203 280 0 0 chr3 130885825 130885875 -96638703 + MIR3 SINE MIR 153 202 -6 * 2084 129 10 0 chr3 130885877 130886180 -96638398 - AluSq SINE Alu -7 306 1 355 297 43 36 chr3 130886185 130886323 -96638255 + L2 LINE L2 3175 3313 0 297 325 127 12 chr3 130887289 130887455 -96637123 + MARNA DNA Mariner 262 446 -140 2929 195 31 6 chr3 130887845 130888388 -96636190 + MER68 LTR ERV1 6 562 0 243 284 16 79 chr3 130888709 130888836 -96635742 - MLT1J LTR MaLR -161 350 232 21 0 0 0 chr3 130889615 130889636 -96634942 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 130889952 130889973 -96634605 + AT_rich Low_complexity Low_complexity 1 21 0 1299 185 15 27 chr3 130890239 130890498 -96634080 - MLT1B LTR MaLR -132 258 3 735 112 0 9 chr3 130890513 130890620 -96633958 + AluSq SINE Alu 83 188 -125 343 151 0 0 chr3 130890621 130890703 -96633875 + AluS SINE Alu 232 313 0 702 188 0 16 chr3 130890819 130890947 -96633631 + FLAM_A SINE Alu 1 126 -7 304 335 59 24 chr3 130892694 130892864 -96631714 + L2 LINE L2 2343 2518 -796 249 136 45 0 chr3 130894239 130894283 -96630295 - MER96B DNA MER1_type? -182 235 190 369 194 14 14 chr3 130894296 130894368 -96630210 - Tigger5 DNA MER2_type 0 2323 2252 315 222 0 0 chr3 130894339 130894393 -96630185 - Tigger5 DNA MER2_type -2269 54 1 * 741 166 17 50 chr3 130894642 130894727 -96629851 - MER96B DNA MER1_type? -242 175 89 2020 121 13 13 chr3 130894727 130895025 -96629553 - AluSx SINE Alu -14 298 1 741 166 17 50 chr3 130895025 130895120 -96629458 - MER96B DNA MER1_type? -328 89 1 1402 209 22 38 chr3 130895329 130895697 -96628881 + MLT1A1 LTR MaLR 1 362 -3 2136 105 70 6 chr3 130895939 130896281 -96628297 + L1PA13 LINE L1 5800 6163 0 244 275 125 50 chr3 130896932 130897052 -96627526 + L2 LINE L2 3144 3272 0 666 287 98 64 chr3 130897276 130897684 -96626894 + L2 LINE L2 2873 3294 -19 527 284 82 42 chr3 130897897 130898037 -96626541 + MLT1K LTR MaLR 126 259 -329 279 0 0 0 chr3 130898037 130898068 -96626510 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 527 284 82 42 chr3 130898068 130898332 -96626246 + MLT1K LTR MaLR 259 580 -8 8035 116 61 15 chr3 130898553 130900727 -96623851 - L1PA10 LINE L1 0 6483 4198 * 27991 81 8 10 chr3 130900726 130905436 -96619142 - L1PA6 LINE L1 0 6154 1472 2318 96 20 0 chr3 130905436 130905737 -96618841 - AluY SINE Alu -4 307 1 27991 81 8 10 chr3 130905737 130907196 -96617382 - L1PA6 LINE L1 -4682 1472 11 15072 186 28 53 chr3 130907205 130911353 -96613225 - L1PA10 LINE L1 -2250 4211 25 257 247 0 11 chr3 130911799 130911892 -96612686 + (TA)n Simple_repeat Simple_repeat 1 92 0 2298 109 0 0 chr3 130912088 130912390 -96612188 + AluY SINE Alu 1 302 -9 1835 170 3 28 chr3 130912677 130912995 -96611583 - AluJo SINE Alu -2 310 1 11359 60 9 11 chr3 130913146 130914565 -96610013 + HERV17 LTR ERV1 3162 4577 -4049 2507 102 10 8 chr3 130914559 130915016 -96609562 + HERV17 LTR ERV1 6809 7548 -1078 * 2469 58 0 0 chr3 130915006 130915298 -96609280 + HERV17 LTR ERV1 8335 8626 0 * 1296 103 0 11 chr3 130915298 130915483 -96609095 + LTR17 LTR ERV1 1 183 -597 6232 28 1 0 chr3 130915484 130916233 -96608345 - L1PA4 LINE L1 -2878 3268 2519 18438 39 3 0 chr3 130916234 130919113 -96605465 + L1PA4 LINE L1 3270 6154 -1 1070 73 13 20 chr3 130919113 130919264 -96605314 + LTR17 LTR ERV1 177 326 -454 1496 270 27 15 chr3 130919278 130919756 -96604822 + L1ME1 LINE L1 5650 6133 -33 247 250 0 12 chr3 130919779 130919863 -96604715 + (CATATA)n Simple_repeat Simple_repeat 2 84 0 31542 104 14 13 chr3 130920010 130925586 -96598992 + L1PA7 LINE L1 588 6152 -2 213 229 48 0 chr3 130925709 130925792 -96598786 + (TA)n Simple_repeat Simple_repeat 2 88 0 26 50 0 0 chr3 130926411 130926451 -96598127 + AT_rich Low_complexity Low_complexity 1 40 0 295 272 19 39 chr3 130927110 130927213 -96597365 + L2 LINE L2 2980 3080 -192 218 278 48 45 chr3 130927319 130927417 -96597161 + MIR SINE MIR 5 105 -103 319 211 263 0 chr3 130927551 130927646 -96596932 + L2 LINE L2 3153 3272 0 903 302 51 28 chr3 130927780 130928171 -96596407 + MLT1I LTR MaLR 10 409 0 214 125 0 0 chr3 130928327 130928359 -96596219 - MIR SINE MIR -111 151 120 403 367 50 68 chr3 130928758 130929036 -96595542 + L2 LINE L2 2987 3259 -13 417 20 0 0 chr3 130930264 130930314 -96594264 + (TG)n Simple_repeat Simple_repeat 1 50 0 228 314 277 0 chr3 130930762 130930950 -96593628 - MIR SINE MIR -14 248 9 2060 143 7 0 chr3 130931293 130931586 -96592992 + AluSx SINE Alu 1 295 -17 305 277 59 0 chr3 130931791 130931892 -96592686 - MIR SINE MIR 0 262 156 195 304 29 65 chr3 130932919 130933057 -96591521 + MIR SINE MIR 88 220 -42 607 267 7 0 chr3 130933070 130933205 -96591373 + MLT1H LTR MaLR 3 138 -411 959 162 6 24 chr3 130933212 130933379 -96591199 - L1PA15 LINE L1 -2 6163 6000 1173 178 0 56 chr3 130933528 130933742 -96590836 - AluJb SINE Alu -110 202 1 2293 105 0 0 chr3 130933888 130934182 -96590396 - AluSg SINE Alu -16 294 1 183 80 0 0 chr3 130934444 130934469 -96590109 + (TG)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr3 130936113 130936136 -96588442 + AT_rich Low_complexity Low_complexity 1 23 0 274 194 48 16 chr3 130936912 130936974 -96587604 + MLT1K LTR MaLR 183 246 -342 240 197 56 14 chr3 130937314 130937385 -96587193 + MLT1K LTR MaLR 511 584 -4 229 322 271 0 chr3 130939214 130939391 -96585187 + MIR SINE MIR 34 258 -4 448 205 41 33 chr3 130939821 130939943 -96584635 - L2 LINE L2 -2960 354 232 1099 248 17 33 chr3 130939943 130940289 -96584289 + MLT2D LTR ERVL 1 394 -20 226 211 39 0 chr3 130940402 130940454 -96584124 - L2 LINE L2 -3179 135 82 456 270 191 9 chr3 130940801 130941016 -96583562 - L2 LINE L2 -39 3274 3021 234 342 45 18 chr3 130941475 130941586 -96582992 - MER94 DNA DNA -16 118 5 240 119 0 0 chr3 130941999 130942041 -96582537 - MADE1 DNA Mariner 0 80 39 249 83 0 0 chr3 130942173 130942209 -96582369 - HSMAR1 DNA Mariner -1251 36 1 243 218 51 13 chr3 130942236 130942314 -96582264 + (TG)n Simple_repeat Simple_repeat 2 82 0 246 240 151 34 chr3 130942399 130942545 -96582033 - MIR SINE MIR -4 258 96 917 253 34 13 chr3 130942698 130942935 -96581643 - MIR SINE MIR 0 262 21 2104 216 104 16 chr3 130942941 130943355 -96581223 - L1MC4a LINE L1 -39 7769 7292 2022 160 19 45 chr3 130943355 130943491 -96581087 + MLT1A1 LTR MaLR 1 139 -226 2308 82 0 3 chr3 130943491 130943794 -96580784 - AluY SINE Alu -9 302 1 2022 160 19 45 chr3 130943794 130944032 -96580546 + MLT1A1 LTR MaLR 139 365 0 2104 216 104 16 chr3 130944032 130944173 -96580405 - L1MC4a LINE L1 -516 7292 7165 312 70 0 0 chr3 130944634 130944677 -96579901 + (TC)n Simple_repeat Simple_repeat 1 43 0 459 0 0 0 chr3 130944677 130944728 -96579850 + (TG)n Simple_repeat Simple_repeat 2 52 0 2007 95 0 11 chr3 130945225 130945498 -96579080 - AluSx SINE Alu 0 312 43 566 213 74 37 chr3 130947043 130947293 -96577285 + Charlie7 DNA MER1_type 1 2611 -1 222 280 0 0 chr3 130947978 130948028 -96576550 + MIR SINE MIR 92 141 -67 2380 86 0 0 chr3 130948040 130948332 -96576246 + AluSg SINE Alu 1 292 -18 226 293 40 0 chr3 130948332 130948407 -96576171 - MIR SINE MIR -172 90 13 682 282 151 44 chr3 130948526 130948900 -96575678 - L2 LINE L2 -7 3306 2879 1781 130 30 23 chr3 130948900 130949230 -96575348 + AluSc SINE Alu 1 309 0 682 282 151 44 chr3 130949230 130949287 -96575291 - L2 LINE L2 -434 2879 2829 280 309 79 7 chr3 130949501 130949640 -96574938 - LTR68 LTR ERV1 -580 160 12 652 315 136 3 chr3 130949650 130949980 -96574598 - L2 LINE L2 -592 2722 2349 881 287 117 8 chr3 130950433 130950986 -96573592 + MLT2F LTR ERVL 6 663 0 189 316 0 0 chr3 130951495 130951533 -96573045 - L2 LINE L2 -86 3186 3149 237 33 0 0 chr3 130951583 130951613 -96572965 + (TG)n Simple_repeat Simple_repeat 2 31 0 477 253 68 19 chr3 130951682 130951844 -96572734 - Charlie8 DNA MER1_type -2146 271 102 2376 84 0 0 chr3 130951865 130952163 -96572415 + AluSq SINE Alu 4 301 -12 22 56 0 0 chr3 130952385 130952421 -96572157 + AT_rich Low_complexity Low_complexity 1 36 0 289 232 40 10 chr3 130952861 130952960 -96571618 + (CGGG)n Simple_repeat Simple_repeat 4 105 0 267 177 13 25 chr3 130955374 130955453 -96569125 + (TA)n Simple_repeat Simple_repeat 1 78 0 1791 199 8 28 chr3 130955665 130956061 -96568517 - MLT1B LTR MaLR 0 390 3 232 352 8 40 chr3 130956138 130956263 -96568315 + MIR SINE MIR 20 140 -122 227 299 103 11 chr3 130956434 130956521 -96568057 + MIR SINE MIR 7 101 -161 749 152 60 7 chr3 130956524 130956773 -96567805 - MSTD LTR MaLR -54 342 1 250 337 11 0 chr3 130956800 130956889 -96567689 + MIR SINE MIR 120 209 -53 2105 114 14 0 chr3 130956899 130957189 -96567389 + AluSx SINE Alu 1 294 -18 290 317 19 10 chr3 130957642 130957746 -96566832 + L2 LINE L2 3168 3272 0 279 114 0 0 chr3 130957873 130957917 -96566661 + (TG)n Simple_repeat Simple_repeat 1 44 0 2082 175 15 24 chr3 130959952 130960494 -96564084 + pTR5 LTR ERV1 743 1279 -1159 1867 101 49 21 chr3 130960500 130960936 -96563642 + pTR5 LTR ERV1 82 714 0 2882 68 13 0 chr3 130961354 130961737 -96562841 + MLT2A1 LTR ERVL 1 388 -56 3472 56 2 7 chr3 130962054 130962504 -96562074 - LTR7 LTR ERV1 -2 448 1 2427 69 45 13 chr3 130962504 130962882 -96561696 - HERVH LTR ERV1 0 7713 7324 1377 111 18 5 chr3 130962882 130963099 -96561479 - HERVH LTR ERV1 -1894 5819 5600 3968 156 1 1 chr3 130963100 130963762 -96560816 - HERVH LTR ERV1 -2564 5149 4488 3210 111 0 4 chr3 130963764 130964260 -96560318 - HERVH LTR ERV1 -3720 3993 3500 824 129 27 0 chr3 130964259 130964406 -96560172 - HERVH LTR ERV1 -4423 3290 3140 * 19295 82 40 8 chr3 130964385 130967286 -96557292 - HERVH LTR ERV1 -4718 2995 1 3362 73 2 7 chr3 130967288 130967738 -96556840 - LTR7 LTR ERV1 -2 448 1 1576 179 86 57 chr3 130968222 130968698 -96555880 - LTR2B LTR ERV1 0 490 1 259 260 27 100 chr3 130968704 130968854 -96555724 + MER77 LTR ERV1 57 195 -410 2035 133 3 13 chr3 130968854 130969163 -96555415 + AluSc SINE Alu 1 306 -3 613 244 83 44 chr3 130969373 130969727 -96554851 + MER77 LTR ERV1 336 667 -23 2381 55 3 0 chr3 130969772 130970062 -96554516 - AluY SINE Alu 0 311 21 28 29 0 0 chr3 130971077 130971112 -96553466 + AT_rich Low_complexity Low_complexity 1 35 0 192 97 0 0 chr3 130971282 130971313 -96553265 + (TA)n Simple_repeat Simple_repeat 2 32 0 679 259 23 17 chr3 130972873 130973047 -96551531 - MIR3 SINE MIR -17 191 17 23 33 0 0 chr3 130973940 130973970 -96550608 + AT_rich Low_complexity Low_complexity 1 30 0 704 184 7 0 chr3 130976631 130976783 -96547795 + CT-rich Low_complexity Low_complexity 3 155 0 300 27 0 0 chr3 130978793 130978830 -96545748 + (TC)n Simple_repeat Simple_repeat 2 38 0 28 0 0 0 chr3 130978857 130978885 -96545693 + AT_rich Low_complexity Low_complexity 1 28 0 194 140 0 20 chr3 130979626 130979676 -96544902 + (CAAAAA)n Simple_repeat Simple_repeat 2 50 0 228 35 0 0 chr3 130980128 130980157 -96544421 + (TG)n Simple_repeat Simple_repeat 2 30 0 646 296 12 0 chr3 130980398 130980567 -96544011 - MIR SINE MIR -83 179 9 187 387 127 0 chr3 130980866 130981016 -96543562 - MIR3 SINE MIR -3 205 37 254 233 27 14 chr3 130981554 130981627 -96542951 + (CATATA)n Simple_repeat Simple_repeat 4 77 0 1595 186 68 0 chr3 130981754 130982077 -96542501 + MER7A DNA MER2_type 1 343 -3 1492 128 110 50 chr3 130983633 130983952 -96540626 + MER44D DNA MER2_type 1 608 -1 1351 308 31 23 chr3 130985565 130986042 -96538536 + L2 LINE L2 2833 3313 0 274 225 238 0 chr3 130986589 130986669 -96537909 - MIR SINE MIR -75 133 35 469 290 21 0 chr3 130987044 130987189 -96537389 + MIR SINE MIR 103 250 -12 193 29 59 0 chr3 130987305 130987339 -96537239 + (TA)n Simple_repeat Simple_repeat 1 36 0 288 0 0 0 chr3 130987362 130987394 -96537184 + (TA)n Simple_repeat Simple_repeat 1 32 0 2100 85 46 0 chr3 130987452 130987733 -96536845 + AluSx SINE Alu 1 294 -18 1925 98 65 7 chr3 130987735 130988011 -96536567 + AluSg SINE Alu 1 292 -18 256 316 53 21 chr3 130989205 130989300 -96535278 + L2 LINE L2 3171 3268 -4 203 245 0 0 chr3 130989303 130989352 -96535226 + (TGAA)n Simple_repeat Simple_repeat 1 49 0 189 147 0 0 chr3 130989684 130989718 -96534860 + (TC)n Simple_repeat Simple_repeat 1 34 0 2293 110 10 0 chr3 130990879 130991231 -96533347 - AluSp SINE Alu 0 355 1 330 233 50 8 chr3 130992061 130992181 -96532397 + L1ME4a LINE L1 5997 6121 0 2217 85 0 56 chr3 130992983 130993302 -96531276 + AluSg SINE Alu 1 301 -9 552 199 13 26 chr3 130994297 130994448 -96530130 - L1MA4 LINE L1 -57 6243 6095 24 53 0 0 chr3 130994534 130994572 -96530006 + AT_rich Low_complexity Low_complexity 1 38 0 305 332 105 71 chr3 130994595 130994677 -96529901 + L2 LINE L2 2909 2987 -285 2319 83 30 3 chr3 130994677 130994977 -96529601 - AluY SINE Alu -3 308 1 305 332 105 71 chr3 130994977 130995246 -96529332 + L2 LINE L2 2987 3272 0 180 0 0 0 chr3 130995528 130995548 -96529030 + (T)n Simple_repeat Simple_repeat 1 20 0 200 35 35 0 chr3 130996907 130996936 -96527642 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 189 74 0 0 chr3 131004586 131004613 -96519965 + (TTA)n Simple_repeat Simple_repeat 1 27 0 1162 181 10 5 chr3 131005383 131005588 -96518990 - AluJb SINE Alu -41 271 66 310 285 172 59 chr3 131006310 131006449 -96518129 + MIR SINE MIR 2 124 -138 1904 164 24 0 chr3 131006449 131006741 -96517837 + 7SLRNA srpRNA srpRNA 11 309 -11 310 285 172 59 chr3 131006741 131006822 -96517756 + MIR SINE MIR 124 247 -15 872 79 0 8 chr3 131007777 131007904 -96516674 + (TTCC)n Simple_repeat Simple_repeat 3 128 0 338 321 99 31 chr3 131012578 131012740 -96511838 + MIR3 SINE MIR 30 202 -6 200 369 27 54 chr3 131012875 131012986 -96511592 + MIR SINE MIR 23 130 -78 199 333 21 69 chr3 131013118 131013262 -96511316 + MIR SINE MIR 6 142 -120 1998 142 3 3 chr3 131013266 131013561 -96511017 + AluSx SINE Alu 1 295 -17 202 245 56 126 chr3 131013588 131013731 -96510847 - L2 LINE L2 -782 2532 2400 530 304 68 14 chr3 131015056 131015276 -96509302 - MIR SINE MIR -23 239 8 220 271 99 77 chr3 131015432 131015653 -96508925 + MIR SINE MIR 10 235 -27 397 262 40 34 chr3 131015675 131015824 -96508754 + MIR SINE MIR 7 156 -106 420 207 54 18 chr3 131015874 131015985 -96508593 + MER97a DNA MER1_type? 44 158 -736 2183 125 29 35 chr3 131016064 131016441 -96508137 + THE1C LTR MaLR 1 375 0 1775 147 0 0 chr3 131016757 131017015 -96507563 + AluSx SINE Alu 45 302 -10 198 138 0 0 chr3 131018067 131018096 -96506482 + L2 LINE L2 3266 3294 -19 2165 123 7 0 chr3 131021011 131021311 -96503267 - AluSx SINE Alu -2 310 9 1960 115 10 21 chr3 131023311 131023634 -96500944 + AluSq SINE Alu 1 320 0 225 209 15 90 chr3 131024349 131024380 -96500198 - L2 LINE L2 -1 3312 3287 726 283 55 44 chr3 131024380 131024832 -96499746 + LTR16A1 LTR ERVL 1 457 0 225 209 15 90 chr3 131024832 131024867 -96499711 - L2 LINE L2 -26 3287 3251 210 308 55 82 chr3 131027785 131027931 -96496647 - L2 LINE L2 -4 3268 3127 925 225 142 20 chr3 131028693 131028946 -96495632 - MLT2B2 LTR ERVL -226 289 6 360 269 39 48 chr3 131028968 131029072 -96495506 - MER5C DNA MER1_type -221 103 1 23 33 0 0 chr3 131029931 131029961 -96494617 + AT_rich Low_complexity Low_complexity 1 30 0 1376 84 0 0 chr3 131031439 131031618 -96492960 + L1PA7 LINE L1 5965 6143 -11 1323 238 32 19 chr3 131031650 131032083 -96492495 + MER69 DNA AcHobo 1908 2346 -180 457 133 12 0 chr3 131033793 131033876 -96490702 + MER53 DNA DNA 2 85 -104 204 319 0 22 chr3 131034898 131034989 -96489589 + MIR SINE MIR 66 154 -108 642 203 0 0 chr3 131035108 131035251 -96489327 + GA-rich Low_complexity Low_complexity 2 144 0 381 309 103 0 chr3 131035946 131036111 -96488467 + MIR SINE MIR 47 228 -34 264 339 16 58 chr3 131036139 131036260 -96488318 - L2 LINE L2 -3 3269 3154 207 0 0 0 chr3 131036898 131036921 -96487657 + (TTTTTG)n Simple_repeat Simple_repeat 3 25 0 379 246 223 42 chr3 131040133 131040348 -96484230 - L2 LINE L2 -39 3274 3021 548 255 81 0 chr3 131041222 131041371 -96483207 + MER69 DNA AcHobo 436 596 -630 1548 230 112 20 chr3 131041372 131041928 -96482650 + L1ME3A LINE L1 5555 6161 -9 314 261 76 85 chr3 131041932 131042143 -96482435 + MER69 DNA AcHobo 579 787 -439 486 230 46 20 chr3 131043924 131044076 -96480502 + MER103 DNA DNA 11 166 0 234 0 0 0 chr3 131044318 131044344 -96480234 + (TA)n Simple_repeat Simple_repeat 2 27 0 343 299 27 121 chr3 131045457 131045822 -96478756 - L1M2 LINE L1 -5763 1086 756 24 0 0 0 chr3 131045856 131045880 -96478698 + GC_rich Low_complexity Low_complexity 1 24 0 222 188 88 75 chr3 131046392 131046472 -96478106 - MIR3 SINE MIR -10 198 118 2103 116 10 3 chr3 131046515 131046817 -96477761 + AluSx SINE Alu 1 304 -8 404 316 106 64 chr3 131047614 131047972 -96476606 + L2 LINE L2 2139 2511 -803 652 272 93 95 chr3 131048074 131048652 -96475926 + L1M4 LINE L1 2644 3220 -2926 6074 102 9 2 chr3 131048662 131049790 -96474788 + L1PA13 LINE L1 5023 6162 -1 328 299 18 56 chr3 131050557 131050841 -96473737 + L1M4 LINE L1 3376 3648 -2498 256 332 81 36 chr3 131050856 131051079 -96473499 + L2 LINE L2 2624 2856 -458 345 311 115 0 chr3 131052908 131053030 -96471548 + MIR SINE MIR 117 252 -10 1837 192 37 6 chr3 131053508 131053862 -96470716 + MLT1A1 LTR MaLR 1 365 0 263 167 91 0 chr3 131255374 131255440 -96269138 - AluS SINE Alu -229 72 1 3168 231 123 24 chr3 131255634 131256191 -96268387 + L1MC4 LINE L1 6458 6959 -1083 2266 63 0 7 chr3 131256191 131256539 -96268039 + AluY SINE Alu 1 346 0 3168 231 123 24 chr3 131256539 131257056 -96267522 + L1MC4 LINE L1 6959 7639 -403 462 233 67 0 chr3 131257080 131257200 -96267378 + L1MC4 LINE L1 7914 8041 -1 26 0 0 0 chr3 131257269 131257295 -96267283 + AT_rich Low_complexity Low_complexity 1 26 0 324 346 0 6 chr3 131257521 131257680 -96266898 + L1ME LINE L1 4067 4224 -1922 26 101 0 0 chr3 131257694 131257783 -96266795 + AT_rich Low_complexity Low_complexity 1 89 0 2445 67 0 7 chr3 131258260 131258558 -96266020 + AluY SINE Alu 1 296 -15 300 325 118 5 chr3 131258634 131258837 -96265741 + L1ME LINE L1 4800 5025 -1121 2382 85 3 0 chr3 131258976 131259271 -96265307 + AluSx SINE Alu 1 296 -16 2265 94 3 3 chr3 131259381 131259678 -96264900 + AluSg SINE Alu 1 297 -13 2125 108 30 7 chr3 131259679 131259984 -96264594 + AluSp SINE Alu 1 312 -1 831 283 47 29 chr3 131260001 131260447 -96264131 + L1ME LINE L1 5329 5782 -339 5743 118 12 15 chr3 131261086 131262542 -96262036 + L1PA11 LINE L1 4242 5784 -390 2510 63 0 0 chr3 131262542 131262842 -96261736 + AluY SINE Alu 1 300 -11 5743 118 12 15 chr3 131262842 131263231 -96261347 + L1PA11 LINE L1 5784 6172 -2 1354 234 19 47 chr3 131264515 131264879 -96259699 + MLT1A2 LTR MaLR 1 354 -20 969 202 11 5 chr3 131266244 131266432 -96258146 - MER5A DNA MER1_type 0 189 1 214 287 156 60 chr3 131266611 131266778 -96257800 - MIR SINE MIR -60 202 20 247 184 41 0 chr3 131267323 131267372 -96257206 - MER5A DNA MER1_type -77 112 62 1315 92 0 0 chr3 131268325 131268489 -96256089 - AluY SINE Alu -22 289 126 276 184 20 0 chr3 131268489 131268538 -96256040 - AluSg/x SINE Alu -138 162 113 210 143 0 0 chr3 131269566 131269601 -96254977 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 209 402 0 0 chr3 131271165 131271262 -96253316 + L2 LINE L2 2928 3024 -289 416 208 26 0 chr3 131271384 131271461 -96253117 + Tigger5 DNA MER2_type 1 79 -2244 231 214 0 0 chr3 131271468 131271510 -96253068 - Tigger5 DNA MER2_type -11 2312 2271 222 359 0 0 chr3 131271541 131271605 -96252973 + L2 LINE L2 3142 3205 -67 32 26 0 0 chr3 131271777 131271816 -96252762 + AT_rich Low_complexity Low_complexity 1 39 0 1174 234 32 46 chr3 131273884 131274230 -96250348 - MER58B DNA MER1_type 0 341 1 25 75 0 0 chr3 131274870 131274923 -96249655 + AT_rich Low_complexity Low_complexity 1 53 0 248 102 20 0 chr3 131276507 131276556 -96248022 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 34 65 0 0 chr3 131277275 131277337 -96247241 + AT_rich Low_complexity Low_complexity 1 62 0 224 354 184 9 chr3 131277632 131277844 -96246734 - MIR SINE MIR -2 260 12 202 278 167 48 chr3 131278603 131278729 -96245849 - MIR3 SINE MIR -36 172 32 280 387 0 0 chr3 131279183 131279289 -96245289 - MIR3 SINE MIR -99 109 4 307 146 0 0 chr3 131279567 131279608 -96244970 - MER4E LTR ERV1 -73 693 653 626 334 96 33 chr3 131279691 131280355 -96244223 + L2 LINE L2 1813 2518 -796 219 139 0 0 chr3 131280432 131280468 -96244110 + (TA)n Simple_repeat Simple_repeat 2 37 0 214 299 57 124 chr3 131280480 131280623 -96243955 + L2 LINE L2 2520 2671 -643 2356 70 0 35 chr3 131280623 131280935 -96243643 + AluY SINE Alu 1 301 -10 214 299 57 124 chr3 131280935 131281145 -96243433 + L2 LINE L2 2671 2849 -465 232 280 210 10 chr3 131281501 131281601 -96242977 + L2 LINE L2 3180 3299 -14 211 357 110 33 chr3 131282054 131282098 -96242480 - MIR SINE MIR -64 198 159 252 86 0 0 chr3 131282098 131282133 -96242445 + (TTA)n Simple_repeat Simple_repeat 1 35 0 211 357 110 33 chr3 131282133 131282270 -96242308 - MIR SINE MIR -103 159 3 410 313 91 55 chr3 131282527 131283000 -96241578 - L1 LINE L1 -754 5392 4903 25 31 0 0 chr3 131283128 131283160 -96241418 + AT_rich Low_complexity Low_complexity 1 32 0 550 235 0 0 chr3 131283281 131283383 -96241195 - FRAM SINE Alu -63 113 12 326 288 62 62 chr3 131283781 131283958 -96240620 + MLT1K LTR MaLR 18 194 -394 233 279 164 0 chr3 131284029 131284151 -96240427 + MLT1H LTR MaLR 21 162 -387 274 296 111 41 chr3 131284245 131284292 -96240286 + MLT1H LTR MaLR 357 399 -150 821 183 32 16 chr3 131284292 131284478 -96240100 - MER53 DNA DNA 0 189 1 274 296 111 41 chr3 131284478 131284602 -96239976 + MLT1H LTR MaLR 399 540 -9 213 300 73 64 chr3 131285817 131285927 -96238651 + MIR SINE MIR 96 206 -56 185 282 35 59 chr3 131288543 131288628 -96235950 - L2 LINE L2 -12 3260 3178 450 0 0 0 chr3 131289408 131289458 -96235120 + (T)n Simple_repeat Simple_repeat 1 50 0 207 224 26 26 chr3 131290041 131290117 -96234461 + A-rich Low_complexity Low_complexity 5 80 0 266 295 8 89 chr3 131290148 131290340 -96234238 - MIR SINE MIR -50 212 38 1600 170 46 25 chr3 131290396 131290678 -96233900 + AluJo SINE Alu 3 290 -22 26 0 0 0 chr3 131290678 131290704 -96233874 + AT_rich Low_complexity Low_complexity 1 26 0 242 296 17 43 chr3 131293729 131293844 -96230734 + MLT1J2 LTR MaLR 69 180 -270 549 278 162 14 chr3 131295957 131296173 -96228405 + MIR SINE MIR 4 251 -11 727 211 108 12 chr3 131298602 131298768 -96225810 - FRAM SINE Alu 0 176 1 1798 182 0 0 chr3 131298801 131299087 -96225491 - AluJb SINE Alu -23 289 4 204 67 0 0 chr3 131299662 131299692 -96224886 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 212 244 141 111 chr3 131300072 131300207 -96224371 - MIR SINE MIR 0 262 124 2299 97 3 3 chr3 131300294 131300594 -96223984 - AluSc SINE Alu -9 300 1 536 242 81 0 chr3 131300852 131300976 -96223602 - MER20 DNA MER1_type 0 219 86 2380 67 0 10 chr3 131301531 131301844 -96222734 + AluY SINE Alu 2 311 0 189 0 0 0 chr3 131303408 131303429 -96221149 + (A)n Simple_repeat Simple_repeat 1 21 0 335 279 114 14 chr3 131303586 131303726 -96220852 - MIR SINE MIR -8 254 101 216 86 0 0 chr3 131305237 131305272 -96219306 + (A)n Simple_repeat Simple_repeat 1 35 0 769 207 50 0 chr3 131305622 131305820 -96218758 - L1MA8 LINE L1 -3 6288 6081 342 277 39 84 chr3 131305825 131305980 -96218598 + L2 LINE L2 3125 3272 0 364 300 186 5 chr3 131306516 131306726 -96217852 - MIR SINE MIR -13 249 2 1223 283 70 44 chr3 131307826 131308325 -96216253 + LTR33 LTR ERVL 3 514 -7 280 271 8 34 chr3 131310069 131310187 -96214391 + GA-rich Low_complexity Low_complexity 5 119 0 27 0 0 0 chr3 131310328 131310355 -96214223 + AT_rich Low_complexity Low_complexity 1 27 0 204 366 56 93 chr3 131311207 131311529 -96213049 - L2 LINE L2 -94 3178 2869 1922 199 54 54 chr3 131311795 131312298 -96212280 - MLT1D LTR MaLR -2 503 1 199 245 57 0 chr3 131313112 131313165 -96211413 - L2 LINE L2 -21 3251 3196 227 79 26 0 chr3 131313977 131314015 -96210563 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 388 330 0 0 chr3 131315571 131315686 -96208892 + MLT1K LTR MaLR 419 533 -55 408 20 0 0 chr3 131315795 131315844 -96208734 + (CA)n Simple_repeat Simple_repeat 2 50 0 346 352 9 0 chr3 131316020 131316125 -96208453 + MIR SINE MIR 43 148 -60 33 43 0 0 chr3 131316312 131316359 -96208219 + AT_rich Low_complexity Low_complexity 1 47 0 306 295 19 9 chr3 131317936 131318041 -96206537 + CT-rich Low_complexity Low_complexity 5 110 0 2317 97 3 0 chr3 131318343 131318642 -96205936 + AluSp SINE Alu 3 302 -11 258 0 47 23 chr3 131318771 131318814 -96205764 + (TAAAA)n Simple_repeat Simple_repeat 3 46 0 354 286 164 18 chr3 131318957 131319128 -96205450 - MIR SINE MIR -47 215 20 771 229 47 118 chr3 131319369 131319709 -96204869 + L2 LINE L2 2998 3313 0 2182 104 0 24 chr3 131320089 131320387 -96204191 + AluSx SINE Alu 1 291 -21 210 37 0 0 chr3 131320952 131320979 -96203599 + (TG)n Simple_repeat Simple_repeat 2 28 0 2143 141 0 0 chr3 131322106 131322411 -96202167 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr3 131323191 131323212 -96201366 + AT_rich Low_complexity Low_complexity 1 21 0 241 203 16 31 chr3 131324520 131324584 -96199994 + GA-rich Low_complexity Low_complexity 3 65 0 2101 96 32 0 chr3 131324742 131325024 -96199554 + AluSc SINE Alu 1 291 -18 22 35 0 0 chr3 131325228 131325257 -96199321 + AT_rich Low_complexity Low_complexity 1 29 0 315 326 22 30 chr3 131325918 131326053 -96198525 - MER5A DNA MER1_type -1 188 55 2994 103 43 0 chr3 131326144 131326582 -96197996 + L1PA14 LINE L1 5691 6147 -14 189 154 0 0 chr3 131326816 131326855 -96197723 + (CAT)n Simple_repeat Simple_repeat 3 41 0 478 279 59 59 chr3 131326881 131327100 -96197478 - MIR SINE MIR -36 226 8 265 333 62 34 chr3 131327602 131327779 -96196799 + MIR SINE MIR 36 217 -45 206 118 0 0 chr3 131328015 131328049 -96196529 + (A)n Simple_repeat Simple_repeat 1 34 0 240 349 12 0 chr3 131328095 131328181 -96196397 + MIR SINE MIR 61 147 -61 183 42 0 0 chr3 131328515 131328539 -96196039 + (TG)n Simple_repeat Simple_repeat 1 24 0 1427 173 92 35 chr3 131331456 131331739 -96192839 - AluJo SINE Alu -13 299 1 2456 69 0 0 chr3 131332912 131333217 -96191361 - AluY SINE Alu -6 305 1 33 0 0 0 chr3 131333350 131333383 -96191195 + AT_rich Low_complexity Low_complexity 1 33 0 1064 157 17 6 chr3 131333629 131333801 -96190777 + FRAM SINE Alu 2 175 -1 9047 32 3 2 chr3 131334142 131335210 -96189368 - MER11C LTR ERVK -2 1069 1 998 199 14 14 chr3 131336713 131336929 -96187649 + MER20 DNA MER1_type 2 217 -2 293 366 8 22 chr3 131338321 131338455 -96186123 + MIR SINE MIR 53 184 -78 533 323 45 0 chr3 131339508 131339709 -96184869 + MIR SINE MIR 37 246 -16 191 294 152 11 chr3 131339719 131339811 -96184767 + MIR SINE MIR 117 221 -41 2296 78 3 0 chr3 131341143 131341479 -96183099 - AluSp SINE Alu 0 338 2 22 35 0 0 chr3 131341637 131341666 -96182912 + AT_rich Low_complexity Low_complexity 1 29 0 218 337 112 47 chr3 131342082 131342530 -96182048 + L2 LINE L2 1942 2418 -896 262 219 100 152 chr3 131343003 131343213 -96181365 - L2 LINE L2 -425 2889 2691 25 51 0 0 chr3 131344375 131344414 -96180164 + AT_rich Low_complexity Low_complexity 1 39 0 461 304 23 61 chr3 131345964 131346227 -96178351 - MIR SINE MIR 0 262 10 32 26 0 0 chr3 131346300 131346339 -96178239 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr3 131346698 131346726 -96177852 + AT_rich Low_complexity Low_complexity 1 28 0 365 301 87 17 chr3 131347147 131347320 -96177258 + MIR SINE MIR 34 218 -44 1271 148 37 9 chr3 131347328 131347544 -96177034 - MLT1A1 LTR MaLR 0 365 144 2097 140 0 0 chr3 131347987 131348287 -96176291 - AluSq SINE Alu -13 300 1 289 136 0 0 chr3 131348762 131348840 -96175738 + AluSp/q SINE Alu 242 319 0 347 313 23 16 chr3 131350218 131350346 -96174232 + L2 LINE L2 2296 2424 -890 1867 155 7 0 chr3 131350411 131350688 -96173890 - AluSx SINE Alu -33 279 1 34 55 0 0 chr3 131350735 131350790 -96173788 + AT_rich Low_complexity Low_complexity 1 55 0 251 309 91 74 chr3 131350807 131351050 -96173528 + L2 LINE L2 2534 2780 -534 235 345 0 0 chr3 131351359 131351446 -96173132 + L2 LINE L2 3227 3313 0 1570 124 36 7 chr3 131351732 131352006 -96172572 - L1MA5A LINE L1 -5 6292 6011 1359 180 108 129 chr3 131352695 131353076 -96171502 + MLT2B1 LTR ERVL 7 380 -34 290 87 22 0 chr3 131353076 131353122 -96171456 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 1359 180 108 129 chr3 131353122 131353157 -96171421 + MLT2B1 LTR ERVL 380 414 0 1979 153 7 3 chr3 131353494 131353801 -96170777 + AluSx SINE Alu 3 310 -2 2524 99 58 23 chr3 131355667 131356100 -96168478 - LTR7 LTR ERV1 -2 448 1 2532 70 44 21 chr3 131356100 131356483 -96168095 - HERVH LTR ERV1 0 7713 7322 1331 134 18 18 chr3 131356481 131356704 -96167874 - HERVH LTR ERV1 -1894 5819 5597 * 3771 139 76 3 chr3 131356701 131357318 -96167260 - HERVH LTR ERV1 -2564 5149 4488 3324 108 8 8 chr3 131357320 131357822 -96166756 - HERVH LTR ERV1 -3720 3993 3492 794 169 20 0 chr3 131357812 131357960 -96166618 - HERVH LTR ERV1 -4423 3290 3140 * 17086 92 14 30 chr3 131357954 131361101 -96163477 - HERVH LTR ERV1 -4726 2987 1 2456 101 70 23 chr3 131361103 131361531 -96163047 - LTR7 LTR ERV1 -2 448 1 189 0 0 0 chr3 131363703 131363724 -96160854 + (TA)n Simple_repeat Simple_repeat 2 22 0 2761 16 0 0 chr3 131363724 131364027 -96160551 - AluYa5 SINE Alu -8 303 1 218 302 0 0 chr3 131364059 131364122 -96160456 + (TTA)n Simple_repeat Simple_repeat 2 64 0 534 209 10 21 chr3 131364308 131364433 -96160145 + MER92C LTR ERV1 1 105 -449 244 274 0 0 chr3 131364536 131364598 -96159980 + MER92C LTR ERV1 493 554 0 648 274 62 18 chr3 131365542 131365768 -96158810 - MIR SINE MIR -8 254 19 1377 266 74 41 chr3 131365781 131366714 -96157864 - HAL1 LINE L1 -695 1812 813 1979 99 0 73 chr3 131366717 131367051 -96157527 + AluSc SINE Alu 1 312 0 1452 219 102 6 chr3 131367071 131367413 -96157165 + MLT1H1 LTR MaLR 181 555 0 475 220 28 18 chr3 131367496 131367605 -96156973 - HAL1 LINE L1 -1695 812 703 2776 182 32 11 chr3 131367636 131368203 -96156375 - L1MC3 LINE L1 -1 7784 7206 1412 260 102 80 chr3 131368258 131368923 -96155655 - HAL1 LINE L1 -1816 691 12 301 283 101 10 chr3 131368948 131369047 -96155531 + L2 LINE L2 3157 3264 -8 21 0 0 0 chr3 131369096 131369117 -96155461 + AT_rich Low_complexity Low_complexity 1 21 0 209 229 292 10 chr3 131369207 131369303 -96155275 - MER5A DNA MER1_type 0 189 67 2157 128 0 6 chr3 131369949 131370261 -96154317 - AluSg SINE Alu 0 310 1 230 116 23 0 chr3 131370698 131370741 -96153837 + GA-rich Low_complexity Low_complexity 3 46 0 814 278 11 53 chr3 131371848 131372077 -96152501 - MIR SINE MIR -5 257 39 1602 100 13 13 chr3 131372077 131372307 -96152271 - MER30 DNA MER1_type 0 230 1 814 278 11 53 chr3 131372307 131372343 -96152235 - MIR SINE MIR -223 39 3 306 263 70 13 chr3 131372390 131372546 -96152032 + L1ME4a LINE L1 5723 5887 -234 507 310 122 13 chr3 131372677 131372980 -96151598 + L2 LINE L2 2978 3313 0 2043 130 3 7 chr3 131376880 131377187 -96147391 + AluSx SINE Alu 1 306 -6 234 0 0 0 chr3 131377997 131378023 -96146555 + (T)n Simple_repeat Simple_repeat 1 26 0 284 315 63 27 chr3 131378396 131378507 -96146071 - L2 LINE L2 -2 3270 3156 185 354 121 10 chr3 131378587 131378686 -96145892 - MIR SINE MIR -133 129 20 25 51 0 0 chr3 131380978 131381017 -96143561 + AT_rich Low_complexity Low_complexity 1 39 0 537 319 87 50 chr3 131381245 131381289 -96143289 + MLT1K LTR MaLR 33 74 -514 2408 76 0 3 chr3 131381289 131381592 -96142986 - AluY SINE Alu -9 302 1 537 319 87 50 chr3 131381592 131381926 -96142652 + MLT1K LTR MaLR 74 425 -163 2268 126 0 0 chr3 131382119 131382429 -96142149 - AluSx SINE Alu -2 310 1 1609 169 6 70 chr3 131383582 131383913 -96140665 - AluJo SINE Alu -2 310 1 232 300 100 0 chr3 131383956 131384056 -96140522 - L2 LINE L2 -9 3304 3195 406 291 236 35 chr3 131384633 131385179 -96139399 + L2 LINE L2 2667 3313 0 474 269 49 102 chr3 131385270 131385515 -96139063 - MIR SINE MIR -13 249 18 308 225 432 6 chr3 131385610 131385779 -96138799 - MIR SINE MIR -12 250 10 1128 222 74 57 chr3 131387188 131387631 -96136947 - MLT1C LTR MaLR -3 464 18 319 323 98 38 chr3 131388324 131388457 -96136121 - MER5A DNA MER1_type -45 144 4 202 167 0 0 chr3 131388534 131388570 -96136008 - L2 LINE L2 -1 3312 3277 21 0 0 0 chr3 131388725 131388746 -96135832 + AT_rich Low_complexity Low_complexity 1 21 0 199 171 66 0 chr3 131389301 131389377 -96135201 + (TA)n Simple_repeat Simple_repeat 1 81 0 417 322 73 33 chr3 131392060 131392305 -96132273 - LTR16A LTR ERVL -179 271 17 561 372 197 8 chr3 131392665 131393173 -96131405 - L3 LINE CR1 -32 1545 942 217 171 80 0 chr3 131393284 131393372 -96131206 + (TA)n Simple_repeat Simple_repeat 2 96 0 275 285 67 35 chr3 131393534 131393657 -96130921 - L1MEc LINE L1 -2694 3521 3403 1661 97 35 0 chr3 131393657 131393915 -96130663 + L1MA1 LINE L1 6036 6302 0 275 285 67 35 chr3 131393915 131394283 -96130295 - L1MEc LINE L1 -2812 3403 3014 1363 230 49 0 chr3 131394556 131394843 -96129735 + AluJo SINE Alu 1 301 -11 252 271 69 27 chr3 131395195 131395383 -96129195 - L1MEc LINE L1 -4769 1627 1432 1752 174 44 81 chr3 131395567 131395997 -96128581 - MLT2D LTR ERVL 0 414 1 358 319 11 6 chr3 131396049 131396231 -96128347 - L1MEc LINE L1 -5049 1156 974 326 213 19 93 chr3 131396698 131396806 -96127772 + L3 LINE CR1 854 953 -624 399 331 164 31 chr3 131397022 131397309 -96127269 + L3 LINE CR1 1252 1576 -1 208 301 81 32 chr3 131397344 131397467 -96127111 - L3 LINE CR1 -572 1005 877 234 359 163 20 chr3 131397609 131398013 -96126565 - L3 LINE CR1 -998 579 118 400 381 12 6 chr3 131401616 131401776 -96122802 - L2 LINE L2 -217 3055 2895 194 323 16 0 chr3 131402167 131402229 -96122349 - L3 LINE CR1 -466 1111 1049 648 328 38 13 chr3 131402544 131402782 -96121796 - MIR SINE MIR -17 245 2 214 273 154 9 chr3 131402883 131402993 -96121585 - L2 LINE L2 0 3313 3188 21 0 0 0 chr3 131403335 131403356 -96121222 + AT_rich Low_complexity Low_complexity 1 21 0 31 44 0 0 chr3 131404152 131404197 -96120381 + AT_rich Low_complexity Low_complexity 1 45 0 252 228 0 0 chr3 131404364 131404421 -96120157 + MIR SINE MIR 156 212 -50 400 353 42 11 chr3 131404723 131405006 -96119572 + L2 LINE L2 2665 2956 -358 330 279 36 21 chr3 131405048 131405188 -96119390 + Charlie7 DNA MER1_type 2 143 -2469 189 132 0 0 chr3 131405320 131405358 -96119220 + (T)n Simple_repeat Simple_repeat 1 38 0 275 298 46 69 chr3 131405464 131405514 -96119064 + L2 LINE L2 3134 3184 -88 2146 109 0 11 chr3 131405514 131405829 -96118749 - AluSq SINE Alu 0 312 1 275 298 46 69 chr3 131405829 131405908 -96118670 + L2 LINE L2 3184 3261 -11 288 91 0 0 chr3 131405924 131405968 -96118610 + (TG)n Simple_repeat Simple_repeat 2 45 0 192 152 0 0 chr3 131405973 131406006 -96118572 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 301 304 71 99 chr3 131406966 131407358 -96117220 + L3 LINE CR1 1092 1472 -105 182 250 98 71 chr3 131407359 131407471 -96117107 - MER5A DNA MER1_type -1 188 74 228 216 175 21 chr3 131407472 131407569 -96117009 + L3 LINE CR1 1466 1577 0 7454 173 78 6 chr3 131407917 131409203 -96115375 + L1PA15 LINE L1 3396 4588 -1577 320 22 0 43 chr3 131409203 131409249 -96115329 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 7454 173 78 6 chr3 131409249 131410416 -96114162 + L1PA15 LINE L1 4588 6033 -132 2110 127 7 0 chr3 131410416 131410708 -96113870 + AluSq SINE Alu 1 294 -19 425 168 26 18 chr3 131410730 131410843 -96113735 + GA-rich Low_complexity Low_complexity 1 114 0 828 140 0 7 chr3 131410843 131410986 -96113592 + L1PA15 LINE L1 6024 6165 0 430 325 16 0 chr3 131411063 131411189 -96113389 - MER5A DNA MER1_type -7 182 55 941 201 5 0 chr3 131411244 131411284 -96113294 + MER3 DNA MER1_type 9 49 -160 267 292 58 53 chr3 131411284 131411455 -96113123 - MER3 DNA MER1_type -1 208 37 227 191 16 0 chr3 131412876 131412939 -96111639 + (TG)n Simple_repeat Simple_repeat 2 65 0 303 71 0 0 chr3 131413055 131413097 -96111481 + (CA)n Simple_repeat Simple_repeat 2 43 0 5674 18 0 3 chr3 131413376 131414031 -96110547 - L1PA4 LINE L1 -3 6152 5500 256 138 0 35 chr3 131414725 131414783 -96109795 + (TCCCC)n Simple_repeat Simple_repeat 1 56 0 263 262 6 18 chr3 131414996 131415168 -96109410 + G-rich Low_complexity Low_complexity 1 170 0 183 121 0 61 chr3 131415235 131415301 -96109277 + (CGGGG)n Simple_repeat Simple_repeat 1 62 0 210 200 13 27 chr3 131415304 131415379 -96109199 + G-rich Low_complexity Low_complexity 3 76 0 593 124 43 0 chr3 131415497 131415658 -96108920 + (TA)n Simple_repeat Simple_repeat 2 169 0 216 67 0 0 chr3 131416438 131416468 -96108110 + (CA)n Simple_repeat Simple_repeat 2 31 0 252 327 148 43 chr3 131416618 131417037 -96107541 + L2 LINE L2 2851 3313 0 1109 241 13 0 chr3 131417140 131417377 -96107201 - MIR SINE MIR -21 241 2 248 103 0 0 chr3 131417463 131417502 -96107076 + L1MC4 LINE L1 6665 6703 -1339 2568 48 0 16 chr3 131417673 131417987 -96106591 - AluY SINE Alu -2 309 1 1260 122 40 18 chr3 131418000 131418222 -96106356 - L1PB2 LINE L1 0 6151 5925 240 243 0 0 chr3 131418435 131418509 -96106069 + (TCCA)n Simple_repeat Simple_repeat 3 76 0 272 320 10 80 chr3 131418509 131418609 -96105969 - L2 LINE L2 -18 3254 3162 25 0 0 0 chr3 131419110 131419135 -96105443 + AT_rich Low_complexity Low_complexity 1 25 0 1477 199 4 15 chr3 131419828 131420100 -96104478 + AluJo SINE Alu 14 282 -30 286 259 163 15 chr3 131421668 131421803 -96102775 + MIR SINE MIR 50 204 -58 386 226 9 26 chr3 131421860 131421975 -96102603 - MLT1L LTR MaLR -11 604 492 862 284 24 8 chr3 131422122 131422372 -96102206 + MIR SINE MIR 7 260 -2 263 217 17 0 chr3 131422374 131422434 -96102144 - MLT1L LTR MaLR -416 199 139 323 230 51 48 chr3 131423046 131423217 -96101361 - L1ME1 LINE L1 -19 6147 6025 35 0 0 0 chr3 131423217 131423252 -96101326 + AT_rich Low_complexity Low_complexity 1 35 0 183 395 12 0 chr3 131424256 131424337 -96100241 + L2 LINE L2 3189 3270 -2 1341 113 87 0 chr3 131426389 131426619 -96097959 - L1MA5A LINE L1 -4 6293 6044 248 412 9 18 chr3 131427086 131427200 -96097378 - L3 LINE CR1 -1 1576 1464 191 282 21 120 chr3 131427712 131427854 -96096724 + L2 LINE L2 3186 3313 0 22 56 0 0 chr3 131428712 131428748 -96095830 + AT_rich Low_complexity Low_complexity 1 36 0 292 333 94 15 chr3 131428894 131429095 -96095483 - L2 LINE L2 -5 3308 3092 255 125 0 0 chr3 131429209 131429249 -96095329 + (TG)n Simple_repeat Simple_repeat 1 40 0 2121 122 7 3 chr3 131429292 131429587 -96094991 - AluSx SINE Alu -16 296 1 36 0 0 0 chr3 131429878 131429914 -96094664 + AT_rich Low_complexity Low_complexity 1 36 0 2063 135 141 5 chr3 131430561 131430938 -96093640 - MSTA LTR MaLR 0 428 1 336 388 0 0 chr3 131431264 131431367 -96093211 - L2 LINE L2 -36 3236 3134 203 383 14 21 chr3 131432944 131433085 -96091493 - MER5A DNA MER1_type -48 141 2 27 62 0 0 chr3 131433470 131433518 -96091060 + AT_rich Low_complexity Low_complexity 1 48 0 239 354 14 61 chr3 131433518 131433665 -96090913 - L2 LINE L2 -67 3205 3066 2015 61 0 0 chr3 131437197 131437458 -96087120 - L1PA13 LINE L1 -4 6159 5899 792 298 153 15 chr3 131438368 131438761 -96085817 - L2 LINE L2 0 3313 2867 365 180 0 0 chr3 131438767 131438828 -96085750 - MER63 DNA MER1_type -98 738 678 415 187 11 0 chr3 131439341 131439432 -96085146 + L1MA8 LINE L1 6197 6288 -3 369 0 0 0 chr3 131439495 131439536 -96085042 + (CA)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr3 131439844 131439866 -96084712 + AT_rich Low_complexity Low_complexity 1 22 0 1303 101 0 0 chr3 131440461 131440653 -96083925 + AluY SINE Alu 114 305 0 303 307 29 44 chr3 131440656 131440793 -96083785 - MER5A DNA MER1_type -52 137 3 210 366 0 0 chr3 131441324 131441407 -96083171 + MIR SINE MIR 72 138 -70 247 217 0 43 chr3 131442172 131442241 -96082337 + MIR3 SINE MIR 122 187 -21 188 292 73 51 chr3 131442504 131442641 -96081937 - MIR SINE MIR -50 212 73 338 0 24 0 chr3 131443778 131443820 -96080758 + (TTTG)n Simple_repeat Simple_repeat 1 43 0 2161 68 0 7 chr3 131443823 131444102 -96080476 - AluY SINE Alu -34 277 1 280 269 142 8 chr3 131444401 131444535 -96080043 + LTR33A LTR ERVL 54 205 -318 247 250 66 53 chr3 131444609 131444761 -96079817 + LTR33A LTR ERVL 370 523 0 307 310 19 57 chr3 131445202 131445360 -96079218 + MER5B DNA MER1_type 27 178 0 306 0 0 0 chr3 131446537 131446571 -96078007 + (CA)n Simple_repeat Simple_repeat 2 35 0 197 326 121 26 chr3 131447320 131447510 -96077068 - L2 LINE L2 -243 3029 2822 2228 87 0 7 chr3 131447894 131448193 -96076385 + AluY SINE Alu 1 297 -14 1709 173 3 24 chr3 131448202 131448525 -96076053 + AluJb SINE Alu 1 317 0 349 345 32 88 chr3 131448691 131448940 -96075638 + L2 LINE L2 3006 3240 -32 315 0 0 0 chr3 131449500 131449535 -96075043 + (CA)n Simple_repeat Simple_repeat 2 36 0 183 267 89 0 chr3 131450765 131450810 -96073768 + L2 LINE L2 3168 3216 -56 202 182 0 0 chr3 131451497 131451530 -96073048 + polypyrimidine Low_complexity Low_complexity 4 36 0 2160 139 7 0 chr3 131451530 131451840 -96072738 - AluSx SINE Alu 0 312 1 1440 201 79 4 chr3 131451847 131452126 -96072452 - AluJo SINE Alu -8 304 5 758 248 97 24 chr3 131452346 131452758 -96071820 - L1M4 LINE L1 -1793 4353 3912 410 184 140 66 chr3 131452915 131453051 -96071527 - MLT1C LTR MaLR -316 151 6 221 272 5 41 chr3 131453198 131453282 -96071296 - MIR SINE MIR -114 94 18 284 244 74 15 chr3 131453319 131453454 -96071124 - L1MC/D LINE L1 -2056 5752 5610 216 350 24 41 chr3 131453662 131453785 -96070793 + MIR SINE MIR 18 138 -70 239 198 0 127 chr3 131453834 131453960 -96070618 + AluSp SINE Alu 30 139 -164 1600 145 18 18 chr3 131454115 131454397 -96070181 + AluSc SINE Alu 21 302 -7 24 0 0 0 chr3 131454598 131454622 -96069956 + AT_rich Low_complexity Low_complexity 1 24 0 25 0 0 0 chr3 131455493 131455518 -96069060 + GC_rich Low_complexity Low_complexity 1 25 0 2459 209 7 6 chr3 131455575 131456116 -96068462 + L1P LINE L1 3807 4348 -1798 317 216 176 0 chr3 131456187 131456289 -96068289 + MER63 DNA MER1_type 1 746 -90 455 222 43 49 chr3 131456494 131456656 -96067922 - AluSq SINE Alu -13 300 140 1506 111 21 0 chr3 131456895 131457130 -96067448 + L1PB1 LINE L1 5911 6150 -1 209 125 0 25 chr3 131457150 131457190 -96067388 + (TAAAAA)n Simple_repeat Simple_repeat 3 41 0 251 246 90 37 chr3 131457210 131457344 -96067234 + MLT1D LTR MaLR 91 231 -274 351 179 0 0 chr3 131457966 131458033 -96066545 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 21 0 0 0 chr3 131459524 131459545 -96065033 + AT_rich Low_complexity Low_complexity 1 21 0 779 257 55 0 chr3 131459691 131459893 -96064685 + MER58A DNA MER1_type 12 224 0 411 21 0 0 chr3 131460211 131460259 -96064319 + (TG)n Simple_repeat Simple_repeat 2 49 0 210 328 198 17 chr3 131461644 131461760 -96062818 - L2 LINE L2 0 3272 3136 205 175 50 0 chr3 131462269 131462309 -96062269 + (TATG)n Simple_repeat Simple_repeat 3 44 0 22 35 0 0 chr3 131462325 131462354 -96062224 + AT_rich Low_complexity Low_complexity 1 29 0 1179 164 9 9 chr3 131462763 131462976 -96061602 - AluJo SINE Alu -23 289 77 1910 200 75 10 chr3 131463174 131463574 -96061004 - MSTB LTR MaLR 0 426 1 25 31 0 0 chr3 131463772 131463804 -96060774 + AT_rich Low_complexity Low_complexity 1 32 0 2263 73 0 45 chr3 131465078 131465392 -96059186 - AluY SINE Alu -9 302 3 2176 125 51 0 chr3 131465395 131465746 -96058832 - L1PA8 LINE L1 -952 5194 4826 5960 77 11 81 chr3 131465746 131466058 -96058520 + L1PA8 LINE L1 5215 5547 -625 10471 69 18 9 chr3 131466058 131467423 -96057155 - SVA Other Other -1 1385 8 5960 77 11 81 chr3 131467423 131468130 -96056448 + L1PA8 LINE L1 5547 6166 -6 21 0 0 0 chr3 131468241 131468262 -96056316 + AT_rich Low_complexity Low_complexity 1 21 0 191 323 21 10 chr3 131469025 131469121 -96055457 + MIR SINE MIR 150 246 -16 229 349 48 62 chr3 131469783 131469992 -96054586 + MIR SINE MIR 23 228 -34 21 0 0 0 chr3 131471169 131471190 -96053388 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 131473090 131473116 -96051462 + AT_rich Low_complexity Low_complexity 1 26 0 2108 89 11 4 chr3 131473116 131473396 -96051182 - AluSp SINE Alu -26 287 6 309 317 89 0 chr3 131474082 131474205 -96050373 - MIR SINE MIR -50 212 79 2108 184 58 33 chr3 131474720 131475171 -96049407 - MLT1C LTR MaLR -5 462 1 268 246 45 27 chr3 131477315 131477425 -96047153 + MIR SINE MIR 96 207 -55 30 21 0 21 chr3 131477654 131477668 -96046910 + AT_rich Low_complexity Low_complexity 1 14 -33 17916 37 6 1 chr3 131477668 131480618 -96043960 + L1PA3 LINE L1 3202 6155 0 30 21 0 21 chr3 131480618 131480651 -96043927 + AT_rich Low_complexity Low_complexity 14 47 0 185 91 0 30 chr3 131480872 131480905 -96043673 + (TC)n Simple_repeat Simple_repeat 2 33 0 369 177 0 0 chr3 131481053 131481132 -96043446 + (TAAA)n Simple_repeat Simple_repeat 4 82 0 44 0 0 0 chr3 131482154 131482198 -96042380 + AT_rich Low_complexity Low_complexity 1 44 0 185 91 0 30 chr3 131482430 131482463 -96042115 + (TC)n Simple_repeat Simple_repeat 2 33 0 405 169 0 0 chr3 131482611 131482694 -96041884 + (TAAA)n Simple_repeat Simple_repeat 4 86 0 278 318 114 0 chr3 131484276 131484364 -96040214 + L2 LINE L2 3201 3298 -15 385 226 21 0 chr3 131484365 131484458 -96040120 - L1ME3 LINE L1 -1 6956 6862 366 189 22 11 chr3 131484472 131484562 -96040016 - L1M4 LINE L1 -877 5269 5179 6132 186 13 30 chr3 131484659 131485330 -96039248 - L1PA14 LINE L1 0 7599 6918 2298 101 3 10 chr3 131485330 131485638 -96038940 - AluSg SINE Alu -4 306 1 6132 186 13 30 chr3 131485638 131487081 -96037497 - L1PA14 LINE L1 -681 6918 5507 6828 202 17 28 chr3 131487081 131488386 -96036192 - L1PA14 LINE L1 -2977 4607 3343 1991 155 0 0 chr3 131488386 131488682 -96035896 - AluSx SINE Alu -12 300 5 6828 202 17 28 chr3 131488682 131489792 -96034786 - L1PA14 LINE L1 -4241 3343 2223 11792 136 20 22 chr3 131489928 131491814 -96032764 - L1PA12 LINE L1 -4589 2992 1111 844 108 8 23 chr3 131491826 131491956 -96032622 - L1PA12 LINE L1 -7451 130 3 * 863 223 33 30 chr3 131491954 131492259 -96032319 - L1ME3 LINE L1 -193 6766 6461 5440 265 90 15 chr3 131492259 131493764 -96030814 - L1ME3 LINE L1 -750 6191 4416 315 0 0 0 chr3 131493764 131493799 -96030779 + (TG)n Simple_repeat Simple_repeat 2 36 0 5440 265 90 15 chr3 131493799 131494831 -96029747 - L1ME3 LINE L1 -2525 4416 3463 827 275 36 0 chr3 131494869 131495116 -96029462 - L1ME3 LINE L1 -3598 3343 3088 12408 204 13 22 chr3 131495248 131498197 -96026381 - L1PA13 LINE L1 -8 6806 3883 2171 99 0 7 chr3 131498197 131498491 -96026087 - AluSq SINE Alu -2 311 20 12408 204 13 22 chr3 131498491 131499264 -96025314 - L1PA13 LINE L1 -2931 3883 3105 225 108 0 0 chr3 131499265 131499302 -96025276 + (TA)n Simple_repeat Simple_repeat 2 38 0 391 167 51 0 chr3 131499305 131499383 -96025195 - L1PA13 LINE L1 -4679 2108 2027 180 77 0 0 chr3 131499383 131499409 -96025169 + (TA)n Simple_repeat Simple_repeat 1 26 0 239 102 0 20 chr3 131499453 131499502 -96025076 + (CTA)n Simple_repeat Simple_repeat 2 49 0 272 294 0 33 chr3 131499519 131499611 -96024967 + C-rich Low_complexity Low_complexity 2 90 0 248 141 42 14 chr3 131499613 131499684 -96024894 + CT-rich Low_complexity Low_complexity 1 73 0 225 159 0 0 chr3 131499747 131499791 -96024787 + C-rich Low_complexity Low_complexity 2 45 0 369 308 3 34 chr3 131499915 131500161 -96024417 + C-rich Low_complexity Low_complexity 1 238 0 879 138 4 0 chr3 131500284 131500538 -96024040 + (TA)n Simple_repeat Simple_repeat 1 255 0 7771 229 51 79 chr3 131500538 131504050 -96020528 - L1PA12 LINE L1 -3700 3884 2 572 261 48 67 chr3 131504056 131504089 -96020489 - L1ME3 LINE L1 -3996 3126 3094 1527 169 30 63 chr3 131504089 131504391 -96020187 - AluJo SINE Alu -20 292 1 572 261 48 67 chr3 131504391 131504699 -96019879 - L1ME3 LINE L1 -4028 3094 2792 629 203 86 35 chr3 131504699 131504896 -96019682 + MER3 DNA MER1_type 2 208 -1 572 261 48 67 chr3 131504896 131504974 -96019604 - L1ME3 LINE L1 -4330 2792 2714 2208 175 8 44 chr3 131505018 131505493 -96019085 - L1MC1 LINE L1 -2 6331 5874 602 258 33 0 chr3 131505497 131505617 -96018961 - FLAM_C SINE Alu -19 124 1 342 333 6 0 chr3 131505625 131505808 -96018770 - L1MEc LINE L1 -4027 2369 2186 4537 216 17 15 chr3 131505821 131507677 -96016901 - L1MC1 LINE L1 -467 5866 4007 436 268 93 76 chr3 131507686 131508034 -96016544 - L1ME3 LINE L1 -4436 2686 2329 237 108 0 0 chr3 131508034 131508071 -96016507 + (TAGA)n Simple_repeat Simple_repeat 3 39 0 436 268 93 76 chr3 131508071 131508129 -96016449 - L1ME3 LINE L1 -4793 2329 2273 2104 127 7 6 chr3 131508183 131508727 -96015851 - L1PA16 LINE L1 -9 6157 5451 319 240 104 64 chr3 131508791 131508870 -96015708 - L1ME3 LINE L1 -4823 2118 2044 2018 127 35 59 chr3 131508870 131508910 -96015668 - THE1B LTR MaLR 0 364 325 2113 120 7 3 chr3 131508910 131509194 -96015384 + AluSq SINE Alu 1 285 -28 2018 127 35 59 chr3 131509194 131509524 -96015054 - THE1B LTR MaLR -39 325 3 10675 126 13 1 chr3 131509526 131511088 -96013490 - THE1B-int LTR MaLR 0 1580 1 2195 124 36 36 chr3 131511088 131511452 -96013126 - THE1B LTR MaLR 0 364 1 319 240 104 64 chr3 131511452 131512054 -96012524 - L1ME3 LINE L1 -4896 2045 1252 463 343 39 23 chr3 131512501 131512889 -96011689 - L1ME3 LINE L1 -6013 410 17 534 259 54 44 chr3 131512956 131513161 -96011417 + MIR SINE MIR 53 259 -3 180 0 0 0 chr3 131513947 131513967 -96010611 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 185 146 21 0 chr3 131514214 131514262 -96010316 + CT-rich Low_complexity Low_complexity 1 49 0 192 77 0 0 chr3 131514280 131514306 -96010272 + (GA)n Simple_repeat Simple_repeat 2 27 0 268 356 87 9 chr3 131516625 131516740 -96007838 + MIR3 SINE MIR 6 129 -79 215 250 77 0 chr3 131517118 131517170 -96007408 + MIR SINE MIR 59 114 -148 356 0 23 0 chr3 131518732 131518776 -96005802 + (TG)n Simple_repeat Simple_repeat 1 45 0 1582 149 76 50 chr3 131518825 131519127 -96005451 - AluJo SINE Alu -2 310 1 22 0 0 0 chr3 131519156 131519178 -96005400 + AT_rich Low_complexity Low_complexity 1 22 0 356 0 0 22 chr3 131519289 131519334 -96005244 + (TG)n Simple_repeat Simple_repeat 2 45 0 25 31 0 0 chr3 131519867 131519899 -96004679 + AT_rich Low_complexity Low_complexity 1 32 0 22 70 0 0 chr3 131520911 131520954 -96003624 + AT_rich Low_complexity Low_complexity 1 43 0 2279 112 3 0 chr3 131521926 131522222 -96002356 - AluSp SINE Alu -16 297 1 1767 164 44 90 chr3 131522501 131522958 -96001620 + L1PA16 LINE L1 5711 6146 -20 26 74 0 0 chr3 131522958 131523012 -96001566 + AT_rich Low_complexity Low_complexity 1 54 0 267 246 0 0 chr3 131523183 131523240 -96001338 + (CA)n Simple_repeat Simple_repeat 2 58 0 422 351 40 6 chr3 131523270 131523444 -96001134 + MIR3 SINE MIR 1 180 -28 351 0 0 0 chr3 131524174 131524213 -96000365 + (TG)n Simple_repeat Simple_repeat 2 40 0 324 0 0 0 chr3 131525051 131525087 -95999491 + (CA)n Simple_repeat Simple_repeat 2 37 0 23 68 0 0 chr3 131525177 131525221 -95999357 + AT_rich Low_complexity Low_complexity 1 44 0 235 315 96 0 chr3 131526453 131526526 -95998052 + L2 LINE L2 3004 3083 -189 24 85 0 0 chr3 131527655 131527714 -95996864 + AT_rich Low_complexity Low_complexity 1 59 0 41309 39 11 1 chr3 131528048 131534146 -95990432 - L1PA4 LINE L1 0 6155 3 312 366 143 6 chr3 131534744 131534919 -95989659 + MIR3 SINE MIR 3 201 -7 326 345 107 52 chr3 131535643 131536046 -95988532 + L2 LINE L2 2455 2879 -435 383 277 84 0 chr3 131536854 131536973 -95987605 + L2 LINE L2 3143 3271 -1 538 327 97 43 chr3 131537693 131538341 -95986237 + L2 LINE L2 2553 3247 -66 2509 7 0 0 chr3 131541063 131541401 -95983177 + L1PA2 LINE L1 5861 6198 0 231 36 0 0 chr3 131541507 131541535 -95983043 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 2292 55 12 64 chr3 131542214 131542542 -95982036 + AluY SINE Alu 1 311 0 254 320 7 41 chr3 131543377 131543524 -95981054 + CT-rich Low_complexity Low_complexity 5 146 0 207 277 11 32 chr3 131543723 131543817 -95980761 + GA-rich Low_complexity Low_complexity 4 95 0 228 35 0 0 chr3 131543826 131543855 -95980723 + (CTG)n Simple_repeat Simple_repeat 1 29 0 381 22 0 0 chr3 131544503 131544549 -95980029 + (TG)n Simple_repeat Simple_repeat 2 47 0 239 0 32 0 chr3 131544591 131544622 -95979956 + (TG)n Simple_repeat Simple_repeat 2 33 0 183 42 0 0 chr3 131544920 131544944 -95979634 + (TG)n Simple_repeat Simple_repeat 2 25 0 276 30 0 0 chr3 131544955 131544988 -95979590 + (CA)n Simple_repeat Simple_repeat 2 34 0 204 135 58 19 chr3 131545831 131545883 -95978695 + (TG)n Simple_repeat Simple_repeat 2 55 0 284 307 79 20 chr3 131549204 131549305 -95975273 + MIR SINE MIR 37 143 -65 2384 86 0 0 chr3 131549316 131549618 -95974960 + AluSc SINE Alu 1 302 -7 694 200 80 7 chr3 131549802 131549952 -95974626 - MER5A DNA MER1_type 0 189 29 201 324 45 68 chr3 131550131 131550307 -95974271 + MER5B DNA MER1_type 7 178 0 243 329 97 13 chr3 131551379 131551534 -95973044 - MIR3 SINE MIR -11 197 30 436 232 0 14 chr3 131551625 131551763 -95972815 + CT-rich Low_complexity Low_complexity 1 136 0 4935 130 37 64 chr3 131551928 131553263 -95971315 - L1PB1 LINE L1 -2 6149 4854 2000 105 11 0 chr3 131554489 131554765 -95969813 + AluSc SINE Alu 1 279 -30 212 333 10 42 chr3 131554796 131554892 -95969686 + L2 LINE L2 2986 3078 -194 28 79 0 0 chr3 131556754 131556817 -95967761 + AT_rich Low_complexity Low_complexity 1 63 0 29 47 0 0 chr3 131556983 131557026 -95967552 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr3 131557444 131557469 -95967109 + AT_rich Low_complexity Low_complexity 1 25 0 283 333 253 22 chr3 131557891 131558291 -95966287 + L3 LINE CR1 256 747 -830 214 186 23 0 chr3 131558388 131558431 -95966147 + GA-rich Low_complexity Low_complexity 4 47 0 327 326 62 14 chr3 131558512 131558656 -95965922 + MIR SINE MIR 6 156 -106 25 31 0 0 chr3 131558851 131558883 -95965695 + AT_rich Low_complexity Low_complexity 1 32 0 1786 97 0 0 chr3 131560896 131561123 -95963455 - AluSc SINE Alu -45 264 38 252 296 127 73 chr3 131561307 131561527 -95963051 - L2 LINE L2 -916 2398 2167 470 229 65 65 chr3 131561594 131561764 -95962814 + MER69A DNA AcHobo 1 170 -7 2862 13 3 0 chr3 131561918 131562235 -95962343 + AluYb8 SINE Alu 1 318 0 210 71 0 0 chr3 131562265 131562293 -95962285 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 1929 104 96 0 chr3 131562851 131563131 -95961447 - AluSq SINE Alu -6 307 1 27 0 0 0 chr3 131563572 131563599 -95960979 + AT_rich Low_complexity Low_complexity 1 27 0 258 341 35 0 chr3 131563781 131563866 -95960712 - MIR SINE MIR -56 152 65 687 302 60 40 chr3 131566234 131566535 -95958043 - L2 LINE L2 -1 3312 3006 3392 236 44 22 chr3 131566569 131566793 -95957785 - L1MB7 LINE L1 -9 6175 5957 1206 184 129 16 chr3 131566793 131567102 -95957476 + MER2 DNA MER2_type 1 344 0 3392 236 44 22 chr3 131567102 131567768 -95956810 - L1MB7 LINE L1 -227 5957 5237 1919 118 93 0 chr3 131567768 131568048 -95956530 - AluSq SINE Alu -7 306 1 3392 236 44 22 chr3 131568048 131568436 -95956142 - L1MB7 LINE L1 -947 5237 4859 1948 117 0 37 chr3 131568448 131568748 -95955830 - AluSx SINE Alu -20 292 4 2151 137 0 3 chr3 131568936 131569249 -95955329 + AluSx SINE Alu 1 312 0 210 375 22 74 chr3 131570174 131570443 -95954135 - L2 LINE L2 -153 3119 2865 228 67 0 0 chr3 131570551 131570581 -95953997 + (TCTA)n Simple_repeat Simple_repeat 1 30 0 215 322 53 35 chr3 131570949 131571120 -95953458 - L2 LINE L2 -910 2404 2231 231 331 79 16 chr3 131574032 131574118 -95950460 + MIR SINE MIR 56 154 -108 1265 230 67 49 chr3 131574118 131574523 -95950055 - MER92A LTR ERV1 0 412 1 231 331 79 16 chr3 131574523 131574563 -95950015 + MIR SINE MIR 154 190 -72 216 158 0 0 chr3 131574876 131574914 -95949664 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 218 306 59 0 chr3 131575870 131575955 -95948623 + MIR SINE MIR 161 250 -12 474 194 319 7 chr3 131576205 131576349 -95948229 - MER5A DNA MER1_type 0 189 1 1293 207 97 7 chr3 131577232 131577532 -95947046 - MSTD LTR MaLR 0 396 70 6482 33 0 0 chr3 131577544 131578307 -95946271 - L1PA3 LINE L1 0 6155 5393 392 129 143 0 chr3 131578307 131578377 -95946201 - MSTD LTR MaLR -348 80 1 220 320 29 45 chr3 131580224 131580409 -95944169 - MIR SINE MIR -51 211 29 320 283 239 0 chr3 131580594 131580732 -95943846 + MIR SINE MIR 20 190 -72 249 312 94 22 chr3 131583506 131583644 -95940934 + MIR3 SINE MIR 50 197 -11 269 217 17 17 chr3 131584770 131584830 -95939748 + (TCCA)n Simple_repeat Simple_repeat 3 62 0 1343 142 7 89 chr3 131585304 131585586 -95938992 + AluJo SINE Alu 36 294 -18 368 320 6 70 chr3 131586236 131586392 -95938186 - MLT1K LTR MaLR -343 245 100 202 258 45 15 chr3 131586648 131586714 -95937864 + (TATATG)n Simple_repeat Simple_repeat 3 70 0 2022 150 0 0 chr3 131587751 131588045 -95936533 + AluJb SINE Alu 1 294 -18 251 45 68 0 chr3 131588555 131588599 -95935979 + AluY SINE Alu 1 47 -261 9492 64 3 4 chr3 131588701 131589909 -95934669 + HERVL-A1 LTR ERVL 4448 5654 0 2661 110 23 10 chr3 131589909 131590308 -95934270 + MLT2A1 LTR ERVL 1 404 -40 336 240 0 0 chr3 131590324 131590445 -95934133 + (TA)n Simple_repeat Simple_repeat 2 122 0 310 123 0 53 chr3 131590446 131590503 -95934075 + MLT2A1 LTR ERVL 391 444 0 12074 70 2 2 chr3 131590503 131592039 -95932539 + HERVL-A1 LTR ERVL 1 1536 -4118 380 306 0 0 chr3 131592276 131592470 -95932108 + G-rich Low_complexity Low_complexity 1 194 0 208 308 191 50 chr3 131592890 131593231 -95931347 + L2 LINE L2 2553 2941 -373 1671 102 113 7 chr3 131593803 131594078 -95930500 - AluSq SINE Alu -6 307 4 303 241 13 0 chr3 131595005 131595084 -95929494 + L1ME1 LINE L1 1985 2064 -4362 205 243 0 0 chr3 131595084 131595121 -95929457 + (TG)n Simple_repeat Simple_repeat 2 38 0 315 293 0 0 chr3 131595121 131595203 -95929375 + L1MC4 LINE L1 6614 6695 -1347 251 132 57 0 chr3 131595214 131595267 -95929311 - MER4B-int LTR ERV1 -5562 1196 1141 202 168 42 21 chr3 131595369 131595464 -95929114 + (TAGA)n Simple_repeat Simple_repeat 3 99 0 21 36 0 0 chr3 131596686 131596714 -95927864 + AT_rich Low_complexity Low_complexity 1 28 0 1590 317 110 14 chr3 131597623 131598559 -95926019 + L2 LINE L2 2131 3147 -166 26 74 0 0 chr3 131599301 131599355 -95925223 + AT_rich Low_complexity Low_complexity 1 54 0 404 324 27 7 chr3 131600221 131600369 -95924209 + MIR SINE MIR 110 260 -2 759 274 90 0 chr3 131601854 131602088 -95922490 - LTR16C LTR ERVL 0 491 237 2008 136 0 0 chr3 131602598 131602885 -95921693 - AluSp SINE Alu -26 287 1 298 288 65 43 chr3 131602889 131603028 -95921550 - L2 LINE L2 -30 3283 3142 2267 123 0 0 chr3 131603478 131603786 -95920792 + AluSc SINE Alu 1 308 -1 1435 257 49 74 chr3 131603803 131604044 -95920534 + L1ME1 LINE L1 2947 3192 -3234 1900 177 30 6 chr3 131604044 131604383 -95920195 + MER7A DNA MER2_type 1 345 -1 1435 257 49 74 chr3 131604383 131605227 -95919351 + L1ME1 LINE L1 3192 4005 -2421 12880 222 26 22 chr3 131605242 131611488 -95913090 + L1PA15 LINE L1 1 6217 -599 1973 125 10 7 chr3 131611488 131611785 -95912793 + AluSp SINE Alu 1 298 -15 234 0 0 0 chr3 131611785 131611811 -95912767 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 12880 222 26 22 chr3 131611811 131612115 -95912463 + L1PA15 LINE L1 6216 6808 -8 694 212 83 9 chr3 131612112 131612329 -95912249 + L1ME1 LINE L1 4009 4241 -2185 * 503 237 0 0 chr3 131612329 131612422 -95912156 + AluJb SINE Alu 195 287 -25 1367 235 54 47 chr3 131612505 131612778 -95911800 + L1ME1 LINE L1 4446 4716 -1710 2145 137 3 0 chr3 131612778 131613077 -95911501 + AluSx SINE Alu 1 300 -12 1367 235 54 47 chr3 131613077 131613395 -95911183 + L1ME1 LINE L1 4716 5041 -1385 805 21 0 0 chr3 131613410 131613506 -95911072 + L1PA3 LINE L1 6060 6155 0 2399 205 38 80 chr3 131613564 131614182 -95910396 + L1MCa LINE L1 5387 5897 -686 2076 92 44 0 chr3 131614182 131614492 -95910086 + AluSq SINE Alu 1 322 0 2399 205 38 80 chr3 131614492 131615015 -95909563 + L1MCa LINE L1 5897 6440 -143 328 239 11 0 chr3 131615030 131615118 -95909460 + L1MA10 LINE L1 6238 6326 -8 201 74 0 0 chr3 131615140 131615167 -95909411 + (CA)n Simple_repeat Simple_repeat 2 28 0 789 152 22 0 chr3 131615170 131615308 -95909270 + L1MA9 LINE L1 6167 6307 -5 2515 252 59 10 chr3 131615312 131616658 -95907920 + L1ME1 LINE L1 5027 6441 -5 22 70 0 0 chr3 131616812 131616855 -95907723 + AT_rich Low_complexity Low_complexity 1 43 0 447 310 96 31 chr3 131617642 131617791 -95906787 - L1MC4a LINE L1 -1885 5923 5785 4193 114 3 0 chr3 131617791 131618405 -95906173 - L1PA15 LINE L1 -4 6161 5546 447 310 96 31 chr3 131618405 131618516 -95906062 - L1MC4a LINE L1 -2023 5785 5646 313 274 49 10 chr3 131618639 131618741 -95905837 - L1MC4a LINE L1 -512 5609 5504 231 61 0 0 chr3 131619731 131619764 -95904814 + (TTTTG)n Simple_repeat Simple_repeat 3 35 0 432 316 42 6 chr3 131619772 131619940 -95904638 + MIR SINE MIR 79 252 -10 2207 108 7 10 chr3 131620096 131620393 -95904185 + AluSq SINE Alu 2 297 -16 248 363 83 36 chr3 131621076 131621269 -95903309 - MIR SINE MIR -24 238 37 544 217 217 50 chr3 131621896 131622094 -95902484 + MIR SINE MIR 31 261 -1 491 122 11 0 chr3 131622188 131622278 -95902300 + (GA)n Simple_repeat Simple_repeat 2 92 0 1256 200 113 36 chr3 131622525 131622860 -95901718 + MLT1A1 LTR MaLR 5 365 0 1462 168 77 15 chr3 131622892 131623231 -95901347 + MER46B DNA MER2_type 1 235 -1 255 125 0 0 chr3 131623376 131623416 -95901162 + (CA)n Simple_repeat Simple_repeat 1 40 0 21 0 0 0 chr3 131623715 131623736 -95900842 + AT_rich Low_complexity Low_complexity 1 21 0 216 297 195 16 chr3 131624263 131624391 -95900187 - L2 LINE L2 -1 3312 3162 25 31 0 0 chr3 131625059 131625091 -95899487 + AT_rich Low_complexity Low_complexity 1 32 0 2005 128 38 0 chr3 131625606 131625896 -95898682 + AluSx SINE Alu 1 301 -11 218 315 189 0 chr3 131626300 131626427 -95898151 - MIR SINE MIR -109 153 3 2476 63 10 0 chr3 131626934 131627236 -95897342 + AluY SINE Alu 7 311 0 23 0 0 0 chr3 131627278 131627301 -95897277 + AT_rich Low_complexity Low_complexity 1 23 0 251 167 56 28 chr3 131627337 131627409 -95897169 + L1ME4a LINE L1 5953 6026 -95 617 235 186 18 chr3 131628232 131628453 -95896125 - MIR SINE MIR -3 259 2 250 260 60 40 chr3 131628673 131628823 -95895755 + MIR SINE MIR 106 258 -4 306 0 0 0 chr3 131630263 131630297 -95894281 + (TC)n Simple_repeat Simple_repeat 2 35 0 225 0 0 0 chr3 131630296 131630321 -95894257 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 648 304 45 12 chr3 131630735 131630978 -95893600 - MIR SINE MIR -6 256 6 660 198 55 22 chr3 131630987 131631169 -95893409 - MER53 DNA DNA 0 189 2 575 266 144 0 chr3 131632429 131632602 -95891976 + MIR SINE MIR 41 238 -24 2183 223 39 15 chr3 131636855 131637447 -95887131 - L1MB8 LINE L1 -32 6146 5541 198 0 0 0 chr3 131637665 131637687 -95886891 + (AAATG)n Simple_repeat Simple_repeat 3 24 0 2511 114 23 5 chr3 131638849 131639245 -95885333 + MLT2A1 LTR ERVL 1 403 -41 336 240 0 0 chr3 131639260 131639381 -95885197 + (TA)n Simple_repeat Simple_repeat 1 121 0 292 123 0 53 chr3 131639382 131639439 -95885139 + MLT2A1 LTR ERVL 391 444 0 11472 70 2 2 chr3 131639439 131640974 -95883604 + HERVL-A1 LTR ERVL 1 1535 -4119 23172 71 4 11 chr3 131641076 131644234 -95880344 - HERVL LTR ERVL -588 5066 1932 1506 163 12 0 chr3 131644355 131644600 -95879978 + AluSq SINE Alu 60 307 -6 506 217 16 0 chr3 131644600 131644729 -95879849 + GA-rich Low_complexity Low_complexity 1 131 0 234 343 95 60 chr3 131645622 131646332 -95878246 + L2 LINE L2 2520 3254 -18 202 296 84 0 chr3 131646617 131646688 -95877890 - L2 LINE L2 0 3313 3237 1922 269 119 45 chr3 131647426 131648414 -95876164 - L2 LINE L2 -3 3310 2240 30 27 0 0 chr3 131649088 131649125 -95875453 + AT_rich Low_complexity Low_complexity 1 37 0 6365 196 130 29 chr3 131651392 131652934 -95871644 - MER52A LTR ERV1 0 1755 59 241 231 0 13 chr3 131653804 131653882 -95870696 - MER52A LTR ERV1 -1678 77 1 1156 120 5 60 chr3 131654307 131654491 -95870087 - AluSg/x SINE Alu -6 306 133 206 359 46 55 chr3 131654501 131654718 -95869860 + L2 LINE L2 2841 3055 -217 297 0 0 0 chr3 131654905 131654938 -95869640 + (TG)n Simple_repeat Simple_repeat 2 34 0 295 322 0 11 chr3 131654991 131655078 -95869500 - L3 LINE CR1 -24 1553 1468 32 26 0 0 chr3 131655211 131655250 -95869328 + AT_rich Low_complexity Low_complexity 1 39 0 224 213 33 0 chr3 131656147 131656208 -95868370 + T-rich Low_complexity Low_complexity 4 66 0 1726 65 0 48 chr3 131657028 131657259 -95867319 - AluY SINE Alu -90 221 2 282 94 57 0 chr3 131657549 131657602 -95866976 - L1MA4 LINE L1 -5 6295 6240 260 304 0 65 chr3 131658158 131658250 -95866328 + L2 LINE L2 2967 3052 -220 1570 223 0 0 chr3 131658299 131658581 -95865997 + AluJo SINE Alu 1 282 -30 486 261 158 5 chr3 131658936 131659120 -95865458 + MIR SINE MIR 48 259 -3 249 33 0 0 chr3 131659121 131659151 -95865427 + (TAG)n Simple_repeat Simple_repeat 3 32 0 257 370 31 8 chr3 131659735 131659862 -95864716 - MIR3 SINE MIR -3 205 76 444 241 37 91 chr3 131660543 131660730 -95863848 - MER5B DNA MER1_type 0 178 2 529 237 220 11 chr3 131662359 131662408 -95862170 - MER58C DNA MER1_type -2205 215 178 5225 36 16 2 chr3 131662408 131663051 -95861527 - L1PA5 LINE L1 -1 6153 5502 529 237 220 11 chr3 131663051 131663178 -95861400 - MER58C DNA MER1_type -2242 178 2 327 277 133 53 chr3 131664034 131664376 -95860202 + L1MC4a LINE L1 5723 5828 -303 360 330 48 44 chr3 131664608 131664835 -95859743 - MIR SINE MIR -29 233 6 21 0 0 0 chr3 131665152 131665173 -95859405 + AT_rich Low_complexity Low_complexity 1 21 0 378 331 55 18 chr3 131665281 131665444 -95859134 + L2 LINE L2 2689 2857 -457 414 0 0 0 chr3 131665821 131665867 -95858711 + (TG)n Simple_repeat Simple_repeat 2 47 0 320 295 37 16 chr3 131665886 131666031 -95858547 + MIR SINE MIR 20 169 -64 206 329 54 27 chr3 131666141 131666290 -95858288 + L2 LINE L2 3161 3313 0 4231 82 2 2 chr3 131667212 131667789 -95856789 + L1PA10 LINE L1 5592 6168 0 30 27 0 0 chr3 131669395 131669432 -95855146 + AT_rich Low_complexity Low_complexity 1 37 0 6741 205 90 27 chr3 131671251 131671623 -95852955 - L1MB3 LINE L1 -7 6412 6065 204 40 0 0 chr3 131671623 131671648 -95852930 + (TA)n Simple_repeat Simple_repeat 1 25 0 6741 205 90 27 chr3 131671648 131674114 -95850464 - L1MB3 LINE L1 -354 6065 3389 2025 215 7 12 chr3 131674114 131674537 -95850041 - L1MB3 LINE L1 -5946 438 18 1233 184 54 96 chr3 131674810 131675217 -95849361 - MLT1B LTR MaLR 0 390 1 264 347 48 32 chr3 131675575 131675699 -95848879 + L2 LINE L2 3116 3241 -31 2171 105 0 16 chr3 131677048 131677362 -95847216 + AluSq SINE Alu 1 309 -4 1255 163 18 0 chr3 131678595 131678822 -95845756 - L1P LINE L1 -759 5387 5157 42829 29 21 1 chr3 131678832 131684859 -95839719 - L1HS LINE L1 0 6155 4 1669 161 19 25 chr3 131684858 131685175 -95839403 - L1P LINE L1 -978 5168 4854 * 548 83 17 8 chr3 131685171 131685291 -95839287 + L1PA11 LINE L1 6071 6172 -2 * 21 0 0 0 chr3 131685636 131685657 -95838921 + AT_rich Low_complexity Low_complexity 1 21 0 26 30 0 0 chr3 131685736 131685769 -95838809 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr3 131687338 131687361 -95837217 + AT_rich Low_complexity Low_complexity 1 23 0 2624 33 0 0 chr3 131687766 131688071 -95836507 + AluY SINE Alu 1 305 -6 6369 130 26 13 chr3 131688127 131689554 -95835024 - L1MA3 LINE L1 -10 6295 4858 363 96 0 0 chr3 131689970 131690022 -95834556 + (CA)n Simple_repeat Simple_repeat 2 53 0 387 247 13 0 chr3 131693844 131693921 -95830657 - Tigger7 DNA MER2_type -1 2486 2409 * 3529 145 47 19 chr3 131693917 131694510 -95830068 - Tigger7 DNA MER2_type -1872 615 6 657 241 36 118 chr3 131694977 131695309 -95829269 + L2 LINE L2 2992 3296 -17 216 158 0 0 chr3 131695318 131695375 -95829203 + (TG)n Simple_repeat Simple_repeat 2 58 0 620 314 54 4 chr3 131695675 131695917 -95828661 - MIR SINE MIR 0 262 9 407 303 15 0 chr3 131696726 131696858 -95827720 + MER94 DNA DNA 1 134 0 23 78 0 0 chr3 131697850 131697901 -95826677 + AT_rich Low_complexity Low_complexity 1 51 0 274 196 0 0 chr3 131698054 131698100 -95826478 + L2 LINE L2 3227 3272 0 305 316 37 15 chr3 131698100 131698236 -95826342 + MIR3 SINE MIR 60 198 -10 1890 163 0 3 chr3 131698239 131698540 -95826038 + AluSx SINE Alu 9 308 -4 191 35 0 35 chr3 131698999 131699028 -95825550 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 28 29 0 0 chr3 131699226 131699261 -95825317 + AT_rich Low_complexity Low_complexity 1 35 0 293 308 93 19 chr3 131699734 131699841 -95824737 + L2 LINE L2 3198 3312 -1 340 253 194 35 chr3 131700019 131700189 -95824389 + MIR SINE MIR 30 226 -36 212 98 24 24 chr3 131701741 131701782 -95822796 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 201 209 0 0 chr3 131701975 131702018 -95822560 - MIR3 SINE MIR 0 208 166 506 312 92 60 chr3 131702878 131703494 -95821084 - L3 LINE CR1 -303 1274 639 21 36 0 0 chr3 131703593 131703621 -95820957 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 131704257 131704278 -95820300 + AT_rich Low_complexity Low_complexity 1 21 0 213 340 82 25 chr3 131704565 131704724 -95819854 - MIR SINE MIR -13 249 82 1261 283 80 34 chr3 131704862 131705364 -95819214 - MLT1G LTR MaLR -60 530 1 194 311 29 68 chr3 131705538 131705641 -95818937 + MER5A DNA MER1_type 73 171 -18 476 339 52 17 chr3 131706912 131707086 -95817492 + MER5A DNA MER1_type 10 189 0 3867 185 33 59 chr3 131707516 131708898 -95815680 - L1MB3 LINE L1 -2 6417 5077 1815 181 3 3 chr3 131708914 131709240 -95815338 + MER47A DNA MER2_type 18 343 -23 11166 210 55 18 chr3 131709306 131711310 -95813268 - L1MB3 LINE L1 -1314 5068 3139 2074 126 14 0 chr3 131711310 131711603 -95812975 - AluSg1 SINE Alu -12 297 1 11166 210 55 18 chr3 131711603 131712722 -95811856 - L1MB3 LINE L1 -3243 3139 2063 1556 196 13 10 chr3 131712722 131713033 -95811545 + AluJo SINE Alu 1 312 0 11166 210 55 18 chr3 131713033 131714777 -95809801 - L1MB3 LINE L1 -4319 2063 16 238 285 130 24 chr3 131715581 131715704 -95808874 + MIR SINE MIR 111 246 -16 21 36 0 0 chr3 131715713 131715741 -95808837 + AT_rich Low_complexity Low_complexity 1 28 0 213 295 16 0 chr3 131717733 131717794 -95806784 + MER5A DNA MER1_type 128 189 0 335 270 93 12 chr3 131718133 131718299 -95806279 - MIR SINE MIR -42 166 16 1041 177 0 0 chr3 131719557 131719715 -95804863 + FAM SINE Alu 1 158 -17 32 26 0 0 chr3 131719727 131719766 -95804812 + AT_rich Low_complexity Low_complexity 1 39 0 342 277 0 39 chr3 131721983 131722113 -95802465 + A-rich Low_complexity Low_complexity 3 127 0 624 321 47 5 chr3 131723190 131723405 -95801173 + MIR SINE MIR 13 241 -21 1619 196 16 16 chr3 131723459 131723770 -95800808 - AluJb SINE Alu 0 312 2 2118 116 0 0 chr3 131724415 131724730 -95799848 - AluSg SINE Alu 0 315 1 21 0 0 0 chr3 131725308 131725329 -95799249 + AT_rich Low_complexity Low_complexity 1 21 0 248 288 25 0 chr3 131726424 131726504 -95798074 - MIR3 SINE MIR -6 202 121 2432 86 0 0 chr3 131726707 131727009 -95797569 - AluSx SINE Alu -10 302 1 2522 62 0 0 chr3 131727208 131727514 -95797064 + AluY SINE Alu 1 306 -5 725 115 13 0 chr3 131727535 131727654 -95796924 - LTR12 LTR ERV1 -133 581 359 326 203 0 0 chr3 131727654 131727723 -95796855 - LTR30 LTR ERV1 -98 624 556 582 140 15 17 chr3 131727727 131727898 -95796680 - LTR12 LTR ERV1 -430 284 1 2338 103 0 0 chr3 131728060 131728370 -95796208 - AluSg SINE Alu 0 310 1 301 308 13 0 chr3 131728432 131728510 -95796068 - L2 LINE L2 -1 3271 3193 326 228 0 167 chr3 131729052 131729232 -95795346 + MIR SINE MIR 113 262 0 222 320 17 74 chr3 131729610 131729785 -95794793 - L2 LINE L2 -235 3037 2873 520 318 128 14 chr3 131730476 131730687 -95793891 - MIR SINE MIR -14 248 14 394 302 60 68 chr3 131730674 131730890 -95793688 + MIR SINE MIR 13 228 -34 * 2189 127 0 0 chr3 131730890 131731189 -95793389 - AluSx SINE Alu -13 299 1 394 302 60 68 chr3 131731189 131731224 -95793354 + MIR SINE MIR 228 262 0 219 88 0 0 chr3 131731991 131732025 -95792553 + (CA)n Simple_repeat Simple_repeat 2 35 0 212 395 32 6 chr3 131732746 131732903 -95791675 - L3 LINE CR1 -1078 499 339 180 241 0 0 chr3 131733011 131733069 -95791509 + (CTA)n Simple_repeat Simple_repeat 2 59 0 284 273 204 23 chr3 131733088 131733260 -95791318 - MIR SINE MIR -44 218 16 296 228 132 102 chr3 131733404 131733571 -95791007 + MER5B DNA MER1_type 7 178 0 212 162 0 0 chr3 131733950 131733987 -95790591 + (CAT)n Simple_repeat Simple_repeat 3 39 0 286 293 24 24 chr3 131734027 131734109 -95790469 + MIR3 SINE MIR 85 166 -42 200 83 0 28 chr3 131735372 131735408 -95789170 + (TTAAA)n Simple_repeat Simple_repeat 1 35 0 518 282 0 8 chr3 131735408 131735539 -95789039 - MER3 DNA MER1_type -78 131 2 193 305 49 12 chr3 131735598 131735680 -95788898 + MIR SINE MIR 101 185 -77 245 270 260 28 chr3 131735990 131736184 -95788394 - MIR3 SINE MIR -25 237 4 329 334 25 109 chr3 131736402 131736770 -95787808 - L2 LINE L2 0 3272 2936 731 293 50 5 chr3 131736804 131737026 -95787552 - MIR SINE MIR -12 250 19 619 257 29 17 chr3 131737026 131737276 -95787302 - L1ME4a LINE L1 -192 5929 5677 377 349 8 15 chr3 131738673 131738805 -95785773 + L2 LINE L2 3137 3267 -5 27 0 0 0 chr3 131741798 131741825 -95782753 + AT_rich Low_complexity Low_complexity 1 27 0 38 0 0 0 chr3 131743866 131743904 -95780674 + AT_rich Low_complexity Low_complexity 1 38 0 1643 130 91 72 chr3 131744066 131744397 -95780181 - MER1B DNA MER1_type 0 337 1 247 217 17 0 chr3 131746720 131746780 -95777798 + (TAGA)n Simple_repeat Simple_repeat 4 64 0 2037 56 0 49 chr3 131748135 131748419 -95776159 - AluY SINE Alu -3 308 39 362 320 124 31 chr3 131750989 131751248 -95773330 - HAL1 LINE L1 -1 2506 2224 727 290 0 6 chr3 131753337 131753513 -95771065 - MIR3 SINE MIR -11 197 23 2255 98 0 0 chr3 131754076 131754407 -95770171 - AluSg SINE Alu 0 331 1 372 210 89 48 chr3 131755486 131755610 -95768968 + MER103 DNA DNA 36 164 -2 189 121 0 0 chr3 131757680 131757713 -95766865 + (CA)n Simple_repeat Simple_repeat 2 34 0 623 335 106 27 chr3 131759093 131759667 -95764911 - L2 LINE L2 -1 3312 2682 23 33 0 0 chr3 131760526 131760556 -95764022 + AT_rich Low_complexity Low_complexity 1 30 0 1532 135 0 9 chr3 131760821 131761050 -95763528 - AluSg/x SINE Alu -2 310 84 192 152 0 0 chr3 131761615 131761648 -95762930 + CT-rich Low_complexity Low_complexity 4 36 0 229 182 0 52 chr3 131763823 131763900 -95760678 + CT-rich Low_complexity Low_complexity 3 75 0 226 320 66 33 chr3 131764466 131764588 -95759990 + MIR SINE MIR 19 144 -64 236 269 0 0 chr3 131766074 131766126 -95758452 - L2 LINE L2 -4 3268 3217 2273 68 0 10 chr3 131767186 131767482 -95757096 + AluY SINE Alu 1 293 -18 1421 141 16 8 chr3 131768175 131768423 -95756155 - L1PB1 LINE L1 0 6151 5902 1471 180 32 32 chr3 131769504 131769782 -95754796 + AluJo SINE Alu 1 278 -34 207 0 0 0 chr3 131769782 131769805 -95754773 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 205 311 14 14 chr3 131770878 131770952 -95753626 - L3 LINE CR1 -11 1566 1493 279 157 0 0 chr3 131771012 131771063 -95753515 + GA-rich Low_complexity Low_complexity 2 52 0 237 219 0 0 chr3 131771107 131771171 -95753407 + L1MC4 LINE L1 6640 6703 -1339 28 0 0 0 chr3 131772686 131772714 -95751864 + AT_rich Low_complexity Low_complexity 1 28 0 316 335 62 34 chr3 131773843 131774019 -95750559 - MIR3 SINE MIR -14 194 14 744 172 0 30 chr3 131775104 131775238 -95749340 - MER94 DNA DNA 0 134 5 258 257 54 40 chr3 131775379 131775453 -95749125 - L2 LINE L2 -4 3309 3235 217 326 43 22 chr3 131775563 131775655 -95748923 - MIR SINE MIR -120 142 49 21 0 0 0 chr3 131776057 131776078 -95748500 + AT_rich Low_complexity Low_complexity 1 21 0 506 272 101 22 chr3 131776706 131776934 -95747644 - MLT1J LTR MaLR -7 504 259 305 198 17 147 chr3 131777834 131777950 -95746628 + MIR SINE MIR 160 260 -2 380 255 21 0 chr3 131779676 131779770 -95744808 + MER21B LTR ERV1 1 96 -767 466 244 69 0 chr3 131779809 131779940 -95744638 + MER21B LTR ERV1 98 237 -626 1509 185 4 18 chr3 131779983 131780259 -95744319 + AluJo SINE Alu 30 301 -11 2344 97 0 0 chr3 131781306 131781604 -95742974 - AluSx SINE Alu -14 298 1 246 236 65 0 chr3 131782934 131783057 -95741521 + (TA)n Simple_repeat Simple_repeat 1 131 0 26 30 0 0 chr3 131784379 131784412 -95740166 + AT_rich Low_complexity Low_complexity 1 33 0 23 54 0 0 chr3 131784444 131784481 -95740097 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 131784503 131784525 -95740053 + AT_rich Low_complexity Low_complexity 1 22 0 25 75 0 0 chr3 131786301 131786354 -95738224 + AT_rich Low_complexity Low_complexity 1 53 0 319 236 31 63 chr3 131787043 131787170 -95737408 - L2 LINE L2 0 3313 3191 214 183 50 0 chr3 131790375 131790435 -95734143 + CT-rich Low_complexity Low_complexity 3 65 0 247 324 0 0 chr3 131793129 131793203 -95731375 - L3 LINE CR1 -9 1568 1495 1698 166 3 27 chr3 131793983 131794278 -95730300 - AluJb SINE Alu -21 291 4 253 379 37 12 chr3 131794783 131794944 -95729634 + MIR SINE MIR 48 212 -50 1735 130 0 0 chr3 131795177 131795416 -95729162 + AluSg SINE Alu 1 239 -71 1815 66 0 9 chr3 131795416 131795643 -95728935 - AluY SINE Alu -85 226 2 513 0 0 0 chr3 131795975 131796032 -95728546 + (CA)n Simple_repeat Simple_repeat 2 58 0 618 223 0 33 chr3 131796032 131796153 -95728425 - FLAM_A SINE Alu -15 118 2 347 361 161 20 chr3 131796185 131796434 -95728144 + L2 LINE L2 2954 3237 -35 24 53 0 0 chr3 131798139 131798177 -95726401 + AT_rich Low_complexity Low_complexity 1 38 0 365 358 64 17 chr3 131798343 131798516 -95726062 + MIR3 SINE MIR 19 199 -9 24 0 0 0 chr3 131798831 131798855 -95725723 + AT_rich Low_complexity Low_complexity 1 24 0 248 364 57 45 chr3 131798879 131799126 -95725452 - L2 LINE L2 -355 2959 2710 1992 179 33 3 chr3 131799140 131799508 -95725070 - MLT1B LTR MaLR 0 390 12 299 257 277 20 chr3 131799724 131799872 -95724706 - L2 LINE L2 -3 3310 3125 21 0 0 0 chr3 131800650 131800671 -95723907 + AT_rich Low_complexity Low_complexity 1 21 0 897 276 129 27 chr3 131801107 131801583 -95722995 + LTR33A LTR ERVL 25 519 -4 2069 108 7 10 chr3 131802940 131803228 -95721350 - AluSx SINE Alu -25 287 1 2271 104 0 3 chr3 131803318 131803616 -95720962 - AluSp SINE Alu -15 298 2 342 354 50 17 chr3 131804714 131804895 -95719683 - L3 LINE CR1 -14 1563 1377 24 32 0 0 chr3 131804917 131804948 -95719630 + AT_rich Low_complexity Low_complexity 1 31 0 1220 186 5 32 chr3 131806390 131806610 -95717968 + MER20 DNA MER1_type 6 219 0 335 339 123 0 chr3 131806718 131806889 -95717689 + MIR SINE MIR 13 204 -58 230 192 0 0 chr3 131807505 131807557 -95717021 + L1MC4 LINE L1 6652 6703 -1339 316 347 21 0 chr3 131807589 131807684 -95716894 - MIR3 SINE MIR -24 184 88 201 196 0 0 chr3 131808985 131809031 -95715547 + CT-rich Low_complexity Low_complexity 1 46 0 1328 204 0 4 chr3 131809094 131809324 -95715254 + AluJo SINE Alu 3 231 -81 36 23 0 0 chr3 131809325 131809368 -95715210 + AT_rich Low_complexity Low_complexity 1 43 0 227 271 31 10 chr3 131809539 131809635 -95714943 + MER103 DNA DNA 57 154 -12 25 95 0 0 chr3 131809990 131810064 -95714514 + AT_rich Low_complexity Low_complexity 1 74 0 1055 167 42 21 chr3 131810806 131811045 -95713533 + L1MA4 LINE L1 5929 6172 -128 2292 59 0 0 chr3 131811073 131811343 -95713235 - AluY SINE Alu -8 303 34 291 161 0 0 chr3 131811791 131811847 -95712731 + A-rich Low_complexity Low_complexity 1 56 0 439 258 73 94 chr3 131815913 131816146 -95708432 - MIR SINE MIR -12 250 23 199 316 161 30 chr3 131817008 131817176 -95707402 - L2 LINE L2 0 3313 3124 1086 244 125 22 chr3 131818991 131819400 -95705178 - MLT1C LTR MaLR 0 467 17 337 208 10 83 chr3 131819564 131819660 -95704918 - L2 LINE L2 0 3272 3184 361 293 77 31 chr3 131820915 131821137 -95703441 - L1ME4a LINE L1 -200 5921 5690 238 191 0 0 chr3 131821142 131821184 -95703394 + MIR SINE MIR 211 252 -10 2550 32 13 13 chr3 131821470 131821781 -95702797 + AluY SINE Alu 1 311 0 404 257 162 0 chr3 131822258 131822394 -95702184 - MIR3 SINE MIR -5 203 46 306 0 0 0 chr3 131822629 131822663 -95701915 + (CA)n Simple_repeat Simple_repeat 2 35 0 247 240 40 144 chr3 131822962 131823087 -95701491 - MIR3 SINE MIR -37 171 60 * 276 301 58 17 chr3 131823084 131823280 -95701298 + MIR SINE MIR 7 206 -56 2376 69 10 0 chr3 131823333 131823636 -95700942 - AluY SINE Alu -5 306 1 405 0 0 0 chr3 131824113 131824158 -95700420 + (TG)n Simple_repeat Simple_repeat 2 46 0 1137 169 99 21 chr3 131824200 131824294 -95700284 - L1M3 LINE L1 -760 5386 5301 261 0 0 0 chr3 131824294 131824323 -95700255 + (TG)n Simple_repeat Simple_repeat 2 30 0 1833 140 7 34 chr3 131824323 131824616 -95699962 - AluSx SINE Alu -27 285 1 1137 169 99 21 chr3 131824616 131824929 -95699649 - L1M3 LINE L1 -844 5302 5104 3259 165 25 20 chr3 131824929 131825562 -95699016 + L1MB1 LINE L1 5520 6166 -2 774 207 11 56 chr3 131825697 131825876 -95698702 + FAM SINE Alu 1 171 -4 426 289 63 25 chr3 131826752 131826911 -95697667 + MIR SINE MIR 86 250 -12 220 314 93 23 chr3 131827056 131827142 -95697436 - MIR SINE MIR -126 136 45 848 363 63 35 chr3 131828074 131828641 -95695937 + L3 LINE CR1 993 1575 -2 349 205 27 80 chr3 131828860 131828972 -95695606 - MLT1J LTR MaLR -8 503 398 358 313 57 32 chr3 131829006 131829290 -95695288 - MLT1J2 LTR MaLR -177 273 11 243 278 30 112 chr3 131829320 131829489 -95695089 + L2 LINE L2 3159 3313 0 2258 116 3 0 chr3 131829706 131830009 -95694569 + AluSx SINE Alu 1 304 -8 2346 179 15 44 chr3 131830434 131830958 -95693620 - L1MB1 LINE L1 -1 6167 5659 2168 127 48 20 chr3 131830960 131831314 -95693264 - THE1B LTR MaLR 0 364 1 486 227 0 0 chr3 131831320 131831430 -95693148 + L1M3 LINE L1 5551 5660 -508 3563 132 12 23 chr3 131833023 131833669 -95690909 - L1MA8 LINE L1 -2 6289 5651 1802 176 45 44 chr3 131833786 131834327 -95690251 - MLT2A2 LTR ERVL -8 546 3 198 118 0 0 chr3 131834329 131834363 -95690215 + (CAT)n Simple_repeat Simple_repeat 2 35 0 1954 101 3 14 chr3 131834455 131834776 -95689802 + AluY SINE Alu 1 318 0 42482 36 22 1 chr3 131835082 131840975 -95683603 + L1PA2 LINE L1 1 6020 -135 252 272 232 31 chr3 131843777 131843900 -95680678 - MIR SINE MIR -1 261 164 1537 101 64 5 chr3 131843900 131844119 -95680459 - 7SLRNA srpRNA srpRNA -88 232 1 252 272 232 31 chr3 131844119 131844186 -95680392 - MIR SINE MIR -98 164 37 23 33 0 0 chr3 131844537 131844567 -95680011 + AT_rich Low_complexity Low_complexity 1 30 0 192 313 0 0 chr3 131844833 131844881 -95679697 - L2 LINE L2 -240 3032 2985 841 258 5 41 chr3 131845465 131845686 -95678892 - MIR SINE MIR -49 213 1 244 197 14 14 chr3 131846998 131847069 -95677509 + GA-rich Low_complexity Low_complexity 1 71 0 189 107 0 0 chr3 131847095 131847123 -95677455 + (TG)n Simple_repeat Simple_repeat 2 29 0 206 216 20 0 chr3 131848831 131848882 -95675696 - L2 LINE L2 -410 2904 2853 469 281 31 19 chr3 131848928 131849088 -95675490 - MIR SINE MIR -71 191 30 1052 278 90 48 chr3 131849641 131850141 -95674437 + L2 LINE L2 2539 3060 -253 432 247 43 19 chr3 131850160 131850322 -95674256 + MER104 DNA Tc2 13 178 -2 1258 228 80 74 chr3 131850387 131850679 -95673899 + MER34C LTR ERV1 17 315 -270 1246 143 39 4 chr3 131850679 131850910 -95673668 - L1PA16 LINE L1 -3 6163 5925 1258 228 80 74 chr3 131850910 131851183 -95673395 + MER34C LTR ERV1 315 585 0 577 274 18 12 chr3 131851187 131851355 -95673223 + L2 LINE L2 3145 3313 0 200 329 29 14 chr3 131853430 131853500 -95671078 + MER5A DNA MER1_type 95 165 -24 448 352 35 39 chr3 131854027 131854283 -95670295 + MIR SINE MIR 8 262 0 191 252 99 92 chr3 131854268 131854399 -95670179 - MIR SINE MIR -57 151 20 * 1249 177 35 0 chr3 131854567 131854793 -95669785 - MER46A DNA MER2_type 0 236 3 22 35 0 0 chr3 131854867 131854896 -95669682 + AT_rich Low_complexity Low_complexity 1 29 0 5053 143 13 13 chr3 131854896 131855750 -95668828 - L1PA16 LINE L1 -9 6157 5304 180 0 0 0 chr3 131856834 131856854 -95667724 + (CAA)n Simple_repeat Simple_repeat 2 21 0 405 298 135 88 chr3 131857751 131858181 -95666397 - MLT1K LTR MaLR 0 588 139 261 0 0 0 chr3 131860210 131860239 -95664339 + (T)n Simple_repeat Simple_repeat 1 29 0 285 200 15 0 chr3 131860480 131860545 -95664033 - FLAM_A SINE Alu -1 132 67 640 279 17 28 chr3 131863304 131863483 -95661095 - MIR SINE MIR -21 241 65 694 290 97 66 chr3 131864032 131864537 -95660041 + L2 LINE L2 2779 3305 -8 21 0 0 0 chr3 131866106 131866127 -95658451 + AT_rich Low_complexity Low_complexity 1 21 0 317 248 32 31 chr3 131866533 131866663 -95657915 - L1MD3 LINE L1 0 8037 7900 44 0 0 0 chr3 131866663 131866707 -95657871 + AT_rich Low_complexity Low_complexity 1 44 0 306 196 59 29 chr3 131866719 131866821 -95657757 - L1MC4 LINE L1 -250 7792 7688 1537 225 66 7 chr3 131866947 131867387 -95657191 - L1MC4 LINE L1 -646 7396 6931 234 269 0 0 chr3 131867523 131867575 -95657003 + LTR30 LTR ERV1 1 52 -670 1128 128 74 135 chr3 131867575 131867979 -95656599 + LTR12 LTR ERV1 55 2021 -417 352 238 0 0 chr3 131867979 131868063 -95656515 + LTR30 LTR ERV1 544 627 -95 218 296 0 14 chr3 131868188 131868259 -95656319 + L2 LINE L2 3244 3313 0 325 341 0 0 chr3 131868680 131868771 -95655807 + MIR3 SINE MIR 87 177 -31 22 0 0 0 chr3 131868781 131868803 -95655775 + AT_rich Low_complexity Low_complexity 1 22 0 224 244 0 0 chr3 131869455 131869496 -95655082 + L2 LINE L2 3182 3222 -91 1358 188 50 11 chr3 131869582 131869864 -95654714 + L1MB2 LINE L1 5875 6167 -4 227 180 0 66 chr3 131872231 131872292 -95652286 + T-rich Low_complexity Low_complexity 2 58 0 233 261 0 15 chr3 131872669 131872734 -95651844 + (TG)n Simple_repeat Simple_repeat 2 65 0 927 89 0 8 chr3 131872788 131872912 -95651666 + AluSq/x SINE Alu 1 123 -189 4177 170 14 17 chr3 131873012 131873203 -95651375 - L1M1 LINE L1 -513 7211 7021 243 0 0 0 chr3 131873203 131873230 -95651348 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4177 170 14 17 chr3 131873230 131873771 -95650807 - L1M1 LINE L1 -703 7021 6483 1151 120 16 5 chr3 131873771 131873955 -95650623 - MER30B DNA MER1_type -4 186 1 4177 170 14 17 chr3 131873955 131874474 -95650104 - L1M1 LINE L1 -1241 6483 5964 7548 211 61 9 chr3 131874491 131876657 -95647921 - L1M1 LINE L1 -1959 5606 3333 262 67 0 22 chr3 131876759 131876804 -95647774 + pTR5 LTR ERV1 226 269 -2169 1711 194 167 90 chr3 131876823 131877554 -95647024 + LTR28 LTR ERV1 60 967 -53 509 274 0 8 chr3 131877611 131877728 -95646850 + LTR28 LTR ERV1 905 1020 0 666 247 37 6 chr3 131877728 131877890 -95646688 - L1MC4 LINE L1 -1180 6862 6696 398 251 96 27 chr3 131877888 131878075 -95646503 - L1MC4a LINE L1 -1224 6584 6385 * 1569 212 21 30 chr3 131878170 131878543 -95646035 + MLT1A2 LTR MaLR 1 370 -4 634 290 113 17 chr3 131878983 131879328 -95645250 - L1MC4a LINE L1 -1542 6266 5889 192 40 0 0 chr3 131880160 131880185 -95644393 + (CA)n Simple_repeat Simple_repeat 2 26 0 1198 63 82 0 chr3 131880185 131880344 -95644234 + AluY SINE Alu 129 300 -11 3958 95 19 23 chr3 131880428 131880995 -95643583 + MER61E LTR ERV1 1 565 -4 468 264 137 60 chr3 131884104 131884604 -95639974 + MLT1H LTR MaLR 3 554 -1 2507 195 32 11 chr3 131884644 131885207 -95639371 - L1MA3 LINE L1 0 6305 5731 8922 194 46 49 chr3 131885318 131885482 -95639096 - L1M1 LINE L1 -4177 3388 3225 2319 103 7 0 chr3 131885482 131885792 -95638786 - AluSp SINE Alu 0 313 2 8922 194 46 49 chr3 131885792 131886344 -95638234 - L1M1 LINE L1 -4340 3225 2673 252 0 0 0 chr3 131886344 131886372 -95638206 + (TTG)n Simple_repeat Simple_repeat 2 29 0 8922 194 46 49 chr3 131886372 131888371 -95636207 - L1M1 LINE L1 -4892 2673 12 2032 141 3 0 chr3 131888711 131889008 -95635570 + AluSx SINE Alu 1 298 -14 2382 213 62 15 chr3 131890365 131891122 -95633456 + L1MC3 LINE L1 5721 6546 -1239 351 140 0 0 chr3 131891152 131891202 -95633376 - THE1A LTR MaLR 0 355 306 1232 218 24 104 chr3 131891303 131891682 -95632896 + MLT2C1 LTR ERVL 1 344 -53 195 42 0 0 chr3 131891682 131891706 -95632872 + (TCTA)n Simple_repeat Simple_repeat 1 24 0 1232 218 24 104 chr3 131891706 131891749 -95632829 + MLT2C1 LTR ERVL 344 389 -8 261 310 0 17 chr3 131891769 131891885 -95632693 + MLT1F1 LTR MaLR 21 134 -433 2340 178 107 0 chr3 131891887 131892411 -95632167 + L1MC3 LINE L1 7199 7778 -7 266 330 107 34 chr3 131892512 131892718 -95631860 - MIR SINE MIR -14 248 28 225 405 61 7 chr3 131893782 131893930 -95630648 - L2 LINE L2 -1 3271 3116 377 311 61 20 chr3 131893940 131894088 -95630490 - L2 LINE L2 -2 3270 3117 631 237 111 30 chr3 131894101 131894299 -95630279 - MER20 DNA MER1_type 0 219 6 221 410 22 22 chr3 131894315 131894449 -95630129 - L2 LINE L2 -171 3101 2968 2362 97 0 3 chr3 131894708 131895019 -95629559 + AluSx SINE Alu 1 310 -2 336 183 0 0 chr3 131895638 131895709 -95628869 - MLT1B LTR MaLR -221 169 99 1161 133 0 0 chr3 131895709 131895867 -95628711 - AluSg/x SINE Alu -18 292 135 690 13 0 0 chr3 131895867 131895946 -95628632 + (TTTTA)n Simple_repeat Simple_repeat 4 82 0 1564 110 130 28 chr3 131895946 131896200 -95628378 - AluSx SINE Alu -30 282 3 412 194 122 0 chr3 131896204 131896302 -95628276 - MLT1B LTR MaLR -280 110 1 1996 168 16 39 chr3 131896304 131896746 -95627832 - L1M4 LINE L1 -504 5670 5236 254 327 15 22 chr3 131896798 131897030 -95627548 + L1M4 LINE L1 4007 4239 -1907 2187 108 7 3 chr3 131897536 131897841 -95626737 - AluSg1 SINE Alu -3 306 1 472 354 0 6 chr3 131897944 131898105 -95626473 - MER5B DNA MER1_type -16 162 3 285 75 0 0 chr3 131898824 131898864 -95625714 + (CA)n Simple_repeat Simple_repeat 2 41 0 246 309 221 0 chr3 131900246 131900382 -95624196 + MIR SINE MIR 56 221 -41 1856 119 149 6 chr3 131900390 131900718 -95623860 - THE1C LTR MaLR 0 375 1 218 275 22 11 chr3 131901944 131902035 -95622543 + (CATATA)n Simple_repeat Simple_repeat 3 94 0 1345 168 62 4 chr3 131902035 131902279 -95622299 - Tigger3(Golem) DNA MER2_type 0 3038 2781 676 211 21 28 chr3 131902276 131902418 -95622160 - Tigger3(Golem) DNA MER2_type -2887 142 2 * 185 362 57 14 chr3 131902458 131902599 -95621979 + L2 LINE L2 2564 2710 -604 182 274 32 42 chr3 131902651 131902746 -95621832 + L2 LINE L2 3084 3177 -136 893 125 7 7 chr3 131902752 131902888 -95621690 - AluJo SINE Alu -176 136 1 383 261 59 0 chr3 131902905 131903024 -95621554 + L2 LINE L2 3176 3301 -12 241 246 0 18 chr3 131903054 131903111 -95621467 + L2 LINE L2 3217 3272 0 449 202 22 0 chr3 131903935 131904024 -95620554 - L2 LINE L2 0 3313 3223 313 266 0 21 chr3 131904036 131904130 -95620448 + (TA)n Simple_repeat Simple_repeat 2 93 0 324 0 0 0 chr3 131904142 131904178 -95620400 + (TG)n Simple_repeat Simple_repeat 2 37 0 192 254 7 160 chr3 131904209 131904484 -95620094 - L2 LINE L2 -114 3199 2967 38 0 0 0 chr3 131904713 131904751 -95619827 + AT_rich Low_complexity Low_complexity 1 38 0 438 347 53 37 chr3 131905638 131905938 -95618640 + L2 LINE L2 2552 2856 -458 316 291 276 31 chr3 131905972 131906233 -95618345 + L2 LINE L2 2948 3272 0 246 128 0 0 chr3 131907478 131907517 -95617061 + (CA)n Simple_repeat Simple_repeat 2 40 0 1735 199 133 28 chr3 131908423 131908679 -95615899 + MLT1D LTR MaLR 1 229 -276 3903 159 116 4 chr3 131908679 131909422 -95615156 - LTR1B LTR ERV1 0 826 1 1735 199 133 28 chr3 131909422 131909622 -95614956 + MLT1D LTR MaLR 229 505 0 10783 37 0 3 chr3 131909911 131911982 -95612596 + L1PA4 LINE L1 4078 6153 -2 352 310 40 70 chr3 131912256 131912456 -95612122 - L2 LINE L2 -663 2651 2458 370 206 0 0 chr3 131914220 131914288 -95610290 - MER5A DNA MER1_type -83 106 39 24 0 0 0 chr3 131914781 131914805 -95609773 + AT_rich Low_complexity Low_complexity 1 24 0 2038 163 82 5 chr3 131915513 131915881 -95608697 - MSTD LTR MaLR 0 396 1 22 0 0 0 chr3 131915999 131916021 -95608557 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 131916182 131916204 -95608374 + AT_rich Low_complexity Low_complexity 1 22 0 216 384 0 0 chr3 131916346 131916419 -95608159 + MIR SINE MIR 119 191 -71 205 195 0 0 chr3 131916845 131916886 -95607692 + A-rich Low_complexity Low_complexity 5 45 0 1655 112 116 18 chr3 131917309 131917586 -95606992 - AluSg1 SINE Alu -5 304 1 187 226 16 48 chr3 131917685 131917747 -95606831 - MIR SINE MIR -13 249 190 454 248 16 47 chr3 131918315 131918444 -95606134 - MIR3 SINE MIR -24 184 60 292 266 13 13 chr3 131919503 131919582 -95604996 + L2 LINE L2 3230 3308 -5 258 348 7 57 chr3 131919615 131919756 -95604822 - MIR3 SINE MIR -62 146 13 200 287 11 58 chr3 131920080 131920167 -95604411 + MIR3 SINE MIR 118 200 -8 22 0 0 0 chr3 131920375 131920397 -95604181 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 131920447 131920470 -95604108 + AT_rich Low_complexity Low_complexity 1 23 0 809 301 26 15 chr3 131920748 131921020 -95603558 - Charlie8 DNA MER1_type -2141 276 2 196 204 142 115 chr3 131921895 131922008 -95602570 - MIR SINE MIR -77 131 16 21 36 0 0 chr3 131922008 131922036 -95602542 + AT_rich Low_complexity Low_complexity 1 28 0 475 311 6 6 chr3 131923911 131924078 -95600500 + L3b LINE CR1 1102 1268 -315 2108 141 0 0 chr3 131925125 131925437 -95599141 + AluSq SINE Alu 1 312 -1 531 272 144 0 chr3 131925883 131926043 -95598535 - MER5A DNA MER1_type 0 189 4 5381 154 24 3 chr3 131926134 131927064 -95597514 - L1MC1 LINE L1 -30 6303 5355 411 299 124 51 chr3 131927169 131927403 -95597175 - MIR SINE MIR -3 259 9 327 348 39 47 chr3 131927525 131927804 -95596774 - L2 LINE L2 -770 2544 2268 926 259 101 48 chr3 131927953 131928289 -95596289 + L2 LINE L2 2358 2711 -603 2010 239 58 30 chr3 131928290 131929540 -95595038 + L1ME3 LINE L1 4839 6161 -1 495 276 62 149 chr3 131929690 131930147 -95594431 + L2 LINE L2 2855 3267 -46 1524 168 31 90 chr3 131930147 131930302 -95594276 + MLT1A1 LTR MaLR 1 164 -201 1819 145 0 8 chr3 131930302 131930564 -95594014 + AluSx SINE Alu 21 280 -32 1524 168 31 90 chr3 131930564 131930796 -95593782 + MLT1A1 LTR MaLR 164 365 0 495 276 62 149 chr3 131930796 131930835 -95593743 + L2 LINE L2 3267 3308 -5 423 0 0 0 chr3 131932098 131932145 -95592433 + (GA)n Simple_repeat Simple_repeat 2 48 0 239 200 0 0 chr3 131932191 131932236 -95592342 - MIR SINE MIR -7 255 211 21 0 0 0 chr3 131933671 131933692 -95590886 + AT_rich Low_complexity Low_complexity 1 21 0 270 0 0 0 chr3 131934767 131934797 -95589781 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 189 107 0 0 chr3 131937220 131937248 -95587330 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1428 185 88 16 chr3 131937523 131937917 -95586661 + MLT2B1 LTR ERVL 1 483 -37 206 95 24 0 chr3 131937917 131937959 -95586619 + (TA)n Simple_repeat Simple_repeat 2 44 0 1428 185 88 16 chr3 131937959 131938000 -95586578 + MLT2B1 LTR ERVL 483 520 0 212 328 0 0 chr3 131939063 131939121 -95585457 + L2 LINE L2 3003 3060 -212 218 325 25 12 chr3 131939345 131939425 -95585153 - MIR SINE MIR 0 262 182 276 355 38 16 chr3 131939856 131940039 -95584539 + MIR SINE MIR 20 206 -56 459 326 33 11 chr3 131940178 131940362 -95584216 - MIR SINE MIR -74 188 1 261 272 39 39 chr3 131941207 131941310 -95583268 - MIR SINE MIR -4 258 156 1955 135 44 30 chr3 131942170 131942534 -95582044 - THE1C LTR MaLR -6 369 1 282 271 12 12 chr3 131942896 131942981 -95581597 + (TA)n Simple_repeat Simple_repeat 1 85 0 21 0 0 0 chr3 131943096 131943117 -95581461 + AT_rich Low_complexity Low_complexity 1 21 0 188 35 35 0 chr3 131943955 131943984 -95580594 + (CAA)n Simple_repeat Simple_repeat 1 30 0 238 346 69 0 chr3 131944641 131944742 -95579836 - MIR SINE MIR -57 151 44 319 129 0 29 chr3 131945389 131945459 -95579119 + (TTCC)n Simple_repeat Simple_repeat 1 68 0 22 0 0 0 chr3 131947314 131947336 -95577242 + AT_rich Low_complexity Low_complexity 1 22 0 1341 156 246 12 chr3 131947346 131947667 -95576911 + MSTD LTR MaLR 1 396 0 207 317 0 40 chr3 131947743 131947844 -95576734 + MIR SINE MIR 116 212 -50 360 0 0 0 chr3 131947878 131947918 -95576660 + (TG)n Simple_repeat Simple_repeat 2 41 0 336 253 88 65 chr3 131947937 131948198 -95576380 + L1ME LINE L1 5517 5783 -338 1665 224 8 20 chr3 131948272 131948630 -95575948 + MLT1A1 LTR MaLR 12 365 0 280 291 128 27 chr3 131949682 131949830 -95574748 - MIR SINE MIR -15 247 85 270 380 116 0 chr3 131949895 131950016 -95574562 - L2 LINE L2 0 3272 3138 195 69 0 0 chr3 131950793 131950822 -95573756 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 953 223 4 30 chr3 131953477 131953595 -95570983 - AluJb SINE Alu -63 249 138 2455 50 13 0 chr3 131953595 131953893 -95570685 - AluY SINE Alu -9 302 1 953 223 4 30 chr3 131953893 131954007 -95570571 - AluJb SINE Alu -174 138 23 214 179 0 0 chr3 131954251 131954290 -95570288 + L3 LINE CR1 1532 1570 -7 921 184 0 0 chr3 131954806 131954958 -95569620 - Tigger3b DNA MER2_type 0 1231 1080 6287 121 58 4 chr3 131955062 131956109 -95568469 - Tigger3b DNA MER2_type -124 1107 4 614 113 50 94 chr3 131956118 131956278 -95568300 + Charlie5 DNA MER1_type 2433 2585 -27 542 344 116 34 chr3 131956565 131957204 -95567374 + L2 LINE L2 1614 2304 -1010 548 339 26 78 chr3 131957318 131957705 -95566873 + L2 LINE L2 2895 3261 -11 1399 254 54 109 chr3 131959210 131959953 -95564625 + MER21B LTR ERV1 13 714 -149 198 0 0 0 chr3 131961386 131961408 -95563170 + (A)n Simple_repeat Simple_repeat 1 22 0 5095 71 1 0 chr3 131961746 131962404 -95562174 + L1PA6 LINE L1 5495 6153 -1 2203 114 0 0 chr3 131962713 131963011 -95561567 - AluSg SINE Alu -10 300 3 248 321 55 0 chr3 131963037 131963146 -95561432 + MIR SINE MIR 137 251 -11 22 35 0 0 chr3 131963516 131963545 -95561033 + AT_rich Low_complexity Low_complexity 1 29 0 30 0 0 0 chr3 131963949 131963979 -95560599 + AT_rich Low_complexity Low_complexity 1 30 0 563 338 145 39 chr3 131964863 131965096 -95559482 + L2 LINE L2 2004 2211 -1103 378 0 0 0 chr3 131965096 131965138 -95559440 + (CA)n Simple_repeat Simple_repeat 2 43 0 563 338 145 39 chr3 131965138 131965629 -95558949 + L2 LINE L2 2211 2838 -476 420 20 0 0 chr3 131965629 131965678 -95558900 + (CA)n Simple_repeat Simple_repeat 1 49 0 563 338 145 39 chr3 131965678 131965823 -95558755 + L2 LINE L2 2838 2966 -348 898 216 11 16 chr3 131965890 131966080 -95558498 - LTR47B LTR ERVL -1 442 254 410 141 0 0 chr3 131966086 131966150 -95558428 - Tigger5 DNA MER2_type -75 2248 2185 825 179 51 167 chr3 131966437 131966493 -95558085 + MLT1A1 LTR MaLR 1 62 -303 2288 83 3 7 chr3 131966493 131966793 -95557785 - AluSg SINE Alu -11 299 1 825 179 51 167 chr3 131966793 131967149 -95557429 + MLT1A1 LTR MaLR 62 365 0 5999 214 121 41 chr3 131967149 131967502 -95557076 + MLT1A1-int LTR MaLR 1 324 -1411 1960 216 106 55 chr3 131967502 131968288 -95556290 + LTR1B LTR ERV1 1 826 0 5999 214 121 41 chr3 131968288 131969540 -95555038 + MLT1A1-int LTR MaLR 324 1735 0 1322 189 5 110 chr3 131969540 131969948 -95554630 + MLT1A1 LTR MaLR 1 365 0 603 281 118 37 chr3 131970455 131970889 -95553689 + L1ME3A LINE L1 2927 3395 -2751 2075 272 56 23 chr3 131970952 131971856 -95552722 + L1ME3A LINE L1 5188 6118 -52 28 0 0 0 chr3 131971946 131971974 -95552604 + AT_rich Low_complexity Low_complexity 1 28 0 246 316 118 17 chr3 131972090 131972327 -95552251 + L1M4 LINE L1 3613 3873 -2273 1876 190 30 56 chr3 131972531 131973053 -95551525 - L1MB5 LINE L1 -5 6161 5676 274 173 0 19 chr3 131973066 131973118 -95551460 - MLT1B LTR MaLR -4 386 336 1308 160 69 33 chr3 131973218 131973330 -95551248 - L1MA8 LINE L1 -14 6286 6179 1868 144 18 0 chr3 131973330 131973614 -95550964 - AluJb SINE Alu -23 289 1 1308 160 69 33 chr3 131973614 131973878 -95550700 - L1MA8 LINE L1 -121 6179 5863 252 337 22 0 chr3 131974321 131974410 -95550168 + MIR3 SINE MIR 77 167 -41 1092 277 114 21 chr3 131974918 131975384 -95549194 - MLT1J LTR MaLR -2 509 1 317 306 0 0 chr3 131975530 131975602 -95548976 + L2 LINE L2 3134 3205 -67 917 303 154 16 chr3 131976059 131976560 -95548018 + L2 LINE L2 1806 2375 -939 227 390 104 16 chr3 131977076 131977258 -95547320 - L2 LINE L2 -2902 412 215 1625 330 141 14 chr3 131978699 131979550 -95545028 - L3 LINE CR1 -11 1566 608 23 0 0 0 chr3 131980007 131980030 -95544548 + AT_rich Low_complexity Low_complexity 1 23 0 234 215 279 0 chr3 131983961 131984040 -95540538 + MIR SINE MIR 122 222 -40 743 283 32 9 chr3 131984467 131984686 -95539892 - MER58A DNA MER1_type 0 224 1 29 0 0 0 chr3 131984724 131984753 -95539825 + AT_rich Low_complexity Low_complexity 1 29 0 1037 224 28 22 chr3 131984880 131985201 -95539377 + L1MC5 LINE L1 7609 7931 -30 291 122 0 0 chr3 131986150 131986199 -95538379 + (TG)n Simple_repeat Simple_repeat 2 50 0 207 88 0 0 chr3 131987033 131987067 -95537511 + (A)n Simple_repeat Simple_repeat 1 34 0 183 129 0 0 chr3 131987084 131987115 -95537463 + (GAA)n Simple_repeat Simple_repeat 2 32 0 493 237 35 0 chr3 131987475 131987589 -95536989 + MIR SINE MIR 135 252 -10 693 319 30 27 chr3 131990551 131990846 -95533732 + L2 LINE L2 3015 3310 -3 375 308 131 75 chr3 131990848 131991247 -95533331 + L2 LINE L2 2191 2617 -697 2361 106 3 0 chr3 131991247 131991559 -95533019 - AluSq SINE Alu 0 313 1 375 308 131 75 chr3 131991559 131991588 -95532990 + L2 LINE L2 2617 2643 -671 2150 147 19 19 chr3 131991588 131991963 -95532615 + THE1C LTR MaLR 1 375 0 9540 124 69 3 chr3 131991965 131993446 -95531132 + THE1C-int LTR MaLR 3 1580 0 2660 105 5 5 chr3 131993448 131993821 -95530757 + THE1C LTR MaLR 3 375 0 215 353 74 8 chr3 131994701 131994823 -95529755 + L2 LINE L2 3142 3271 -1 202 239 0 0 chr3 131995554 131995600 -95528978 + (TA)n Simple_repeat Simple_repeat 1 46 0 238 266 51 57 chr3 131995633 131995791 -95528787 - HAL1b LINE L1 -5 1343 1187 404 313 45 67 chr3 131995811 131996185 -95528393 - L1ME4a LINE L1 -157 5964 5599 269 289 116 50 chr3 131997580 131997701 -95526877 - MIR SINE MIR -64 144 16 881 303 4 0 chr3 131997946 131998177 -95526401 - MIR SINE MIR -20 242 11 180 0 0 0 chr3 131999694 131999714 -95524864 + (A)n Simple_repeat Simple_repeat 1 20 0 27 29 0 0 chr3 131999802 131999836 -95524742 + AT_rich Low_complexity Low_complexity 1 34 0 243 0 0 0 chr3 132000831 132000858 -95523720 + (A)n Simple_repeat Simple_repeat 1 27 0 362 276 0 44 chr3 132001094 132001243 -95523335 - MLT1J LTR MaLR -296 150 18 1730 190 14 0 chr3 132001687 132002035 -95522543 + L1MA4 LINE L1 5947 6299 -1 26380 53 5 1 chr3 132002170 132006335 -95518243 + L1PA5 LINE L1 1977 6153 -1 305 297 96 51 chr3 132006460 132006753 -95517825 - L2 LINE L2 -431 2883 2578 210 37 0 0 chr3 132007185 132007212 -95517366 + (CA)n Simple_repeat Simple_repeat 1 27 0 662 368 99 19 chr3 132007420 132007955 -95516623 - L3 LINE CR1 -2 1575 998 582 300 64 39 chr3 132008061 132008192 -95516386 + L1 LINE L1 3054 3180 -2966 2510 54 0 0 chr3 132008192 132008486 -95516092 + AluY SINE Alu 3 296 -15 582 300 64 39 chr3 132008486 132008555 -95516023 + L1 LINE L1 3180 3246 -2900 1927 146 0 0 chr3 132008555 132008829 -95515749 + AluSx SINE Alu 1 274 -38 582 300 64 39 chr3 132008829 132009561 -95515017 + L1 LINE L1 3246 4017 -2129 182 329 24 0 chr3 132009595 132009677 -95514901 - L2 LINE L2 -1005 2309 2226 2430 67 0 0 chr3 132009748 132010047 -95514531 - AluY SINE Alu -2 309 11 882 192 24 16 chr3 132010986 132011312 -95513266 - MER93b LTR ERV1 0 373 13 195 42 0 0 chr3 132011448 132011472 -95513106 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 187 330 125 18 chr3 132011488 132011712 -95512866 + L2 LINE L2 2396 2643 -671 187 368 0 0 chr3 132012235 132012303 -95512275 + L3 LINE CR1 703 770 -807 388 22 0 0 chr3 132012434 132012480 -95512098 + MADE1 DNA Mariner 6 51 -29 812 205 154 23 chr3 132012488 132012892 -95511686 + MLT1E3 LTR MaLR 111 624 0 262 311 49 79 chr3 132013755 132013919 -95510659 - MIR SINE MIR -51 211 53 346 307 43 34 chr3 132014078 132014250 -95510328 - MIR SINE MIR -55 207 33 29 28 0 0 chr3 132014830 132014866 -95509712 + AT_rich Low_complexity Low_complexity 1 36 0 459 0 0 0 chr3 132015628 132015679 -95508899 + (CA)n Simple_repeat Simple_repeat 1 51 0 628 55 22 0 chr3 132015857 132015948 -95508630 - L1MA1 LINE L1 0 6302 6210 349 228 114 9 chr3 132016000 132016114 -95508464 + MIR SINE MIR 66 191 -71 1996 155 0 13 chr3 132017117 132017433 -95507145 + AluJb SINE Alu 1 312 0 2129 106 0 0 chr3 132017668 132017974 -95506604 - AluSq SINE Alu 0 306 1 249 333 0 22 chr3 132018064 132018154 -95506424 + L2 LINE L2 3149 3236 -36 252 0 0 0 chr3 132019146 132019174 -95505404 + (TC)n Simple_repeat Simple_repeat 1 28 0 771 338 70 11 chr3 132019594 132020068 -95504510 - L2 LINE L2 -997 2317 1816 23 33 0 0 chr3 132020070 132020100 -95504478 + AT_rich Low_complexity Low_complexity 1 30 0 1777 154 4 0 chr3 132020117 132020390 -95504188 + AluJb SINE Alu 1 274 -38 207 329 12 0 chr3 132021628 132021710 -95502868 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 236 228 9 0 chr3 132022057 132022171 -95502407 + (TA)n Simple_repeat Simple_repeat 1 115 0 902 148 0 0 chr3 132022213 132022341 -95502237 + AluJo SINE Alu 59 186 -126 262 241 13 7 chr3 132022430 132022575 -95502003 + L1ME2 LINE L1 5761 5948 -216 225 324 115 47 chr3 132023925 132024343 -95500235 + L2 LINE L2 2595 3060 -212 287 368 72 0 chr3 132024418 132024570 -95500008 + MIR3 SINE MIR 15 177 -31 286 239 159 0 chr3 132024962 132025050 -95499528 + L2 LINE L2 3207 3308 -5 230 200 14 14 chr3 132026467 132026537 -95498041 + L1MCa LINE L1 1995 2064 -4362 * 244 303 0 0 chr3 132026519 132026608 -95497970 - L1MC4 LINE L1 -1340 6702 6614 203 167 0 21 chr3 132026611 132026659 -95497919 + (TA)n Simple_repeat Simple_repeat 1 47 0 1387 144 4 4 chr3 132026659 132026909 -95497669 - L1MA4 LINE L1 -15 6285 6036 180 319 43 35 chr3 132026927 132027043 -95497535 - L2 LINE L2 -962 2352 2236 237 305 40 99 chr3 132029655 132029806 -95494772 + L2 LINE L2 3172 3313 0 27 49 0 0 chr3 132030307 132030348 -95494230 + AT_rich Low_complexity Low_complexity 1 41 0 235 209 0 0 chr3 132031000 132031043 -95493535 - MIR SINE MIR -10 252 210 695 237 85 28 chr3 132031072 132031249 -95493329 + MER5A DNA MER1_type 2 188 -1 25 51 0 0 chr3 132031787 132031826 -95492752 + AT_rich Low_complexity Low_complexity 1 39 0 21 57 0 0 chr3 132031863 132031898 -95492680 + AT_rich Low_complexity Low_complexity 1 35 0 2036 189 58 110 chr3 132032447 132033046 -95491532 - MER82 DNA MER2_type -59 594 27 207 100 0 0 chr3 132035462 132035492 -95489086 + (TATATG)n Simple_repeat Simple_repeat 3 32 0 426 335 18 6 chr3 132035997 132036161 -95488417 - MIR3 SINE MIR -23 185 20 324 360 107 43 chr3 132036628 132036975 -95487603 - L2 LINE L2 -8 3264 2896 197 200 67 33 chr3 132037126 132037186 -95487392 + MIR SINE MIR 120 181 -81 513 269 133 11 chr3 132037214 132037478 -95487100 + L1ME LINE L1 5393 5688 -433 193 275 25 38 chr3 132037653 132037733 -95486845 + MIR SINE MIR 178 256 -6 339 375 33 16 chr3 132037762 132037946 -95486632 - L2 LINE L2 -556 2758 2572 210 171 0 0 chr3 132038240 132038281 -95486297 + (CA)n Simple_repeat Simple_repeat 1 41 0 196 264 88 22 chr3 132038357 132038448 -95486130 - L3 LINE CR1 -88 1489 1393 457 330 75 24 chr3 132040143 132040575 -95484003 + L2 LINE L2 2571 3023 -249 408 340 21 31 chr3 132041449 132041643 -95482935 + MIR SINE MIR 65 256 -6 384 173 236 101 chr3 132042144 132042352 -95482226 + MER106A DNA MER1_type 1 236 0 345 265 221 29 chr3 132042487 132042691 -95481887 + MIR SINE MIR 20 262 0 2223 148 0 0 chr3 132044208 132044566 -95480012 - L1PA16 LINE L1 -1 6165 5808 228 180 0 33 chr3 132044933 132044994 -95479584 + CT-rich Low_complexity Low_complexity 2 60 0 496 327 58 5 chr3 132045184 132045389 -95479189 + MIR SINE MIR 46 261 -1 490 273 7 53 chr3 132047784 132047934 -95476644 + MIR SINE MIR 50 192 -70 324 378 33 6 chr3 132048034 132048214 -95476364 - L3 LINE CR1 -12 1565 1381 309 285 47 64 chr3 132048262 132048434 -95476144 - MIR SINE MIR -23 239 71 286 196 9 103 chr3 132048580 132048687 -95475891 + MIR SINE MIR 114 210 -52 388 371 11 11 chr3 132050631 132050806 -95473772 + MIR3 SINE MIR 32 206 -2 21 57 0 0 chr3 132051036 132051071 -95473507 + AT_rich Low_complexity Low_complexity 1 35 0 281 369 45 13 chr3 132051087 132051244 -95473334 - MIR SINE MIR -50 212 51 528 45 0 0 chr3 132051258 132051325 -95473253 + (TGGA)n Simple_repeat Simple_repeat 3 69 0 2404 72 0 3 chr3 132051889 132052196 -95472382 + AluY SINE Alu 1 306 -5 22 0 0 0 chr3 132052988 132053010 -95471568 + AT_rich Low_complexity Low_complexity 1 22 0 748 309 133 38 chr3 132053385 132053858 -95470720 - LTR33A LTR ERVL -5 518 1 486 149 0 0 chr3 132053913 132054000 -95470578 + (TA)n Simple_repeat Simple_repeat 2 88 0 238 36 0 0 chr3 132054000 132054028 -95470550 + (CA)n Simple_repeat Simple_repeat 1 28 0 554 300 110 4 chr3 132055441 132055668 -95468910 - MIR SINE MIR -3 259 9 211 326 78 31 chr3 132056416 132056545 -95468033 + L2 LINE L2 3171 3305 -8 213 146 24 0 chr3 132056688 132056729 -95467849 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 22 0 0 0 chr3 132056970 132056992 -95467586 + AT_rich Low_complexity Low_complexity 1 22 0 224 415 15 23 chr3 132060167 132060320 -95464258 + MIR SINE MIR 2 151 -62 257 285 99 55 chr3 132060833 132061002 -95463576 + L1MB4 LINE L1 2443 2603 -3543 2809 19 0 6 chr3 132061002 132061320 -95463258 + AluYb8 SINE Alu 1 316 -2 257 285 99 55 chr3 132061320 132061950 -95462628 + L1MB4 LINE L1 2603 3277 -2869 241 291 74 52 chr3 132062180 132062506 -95462072 + L1MB4 LINE L1 3659 3991 -2155 308 308 28 21 chr3 132062641 132062784 -95461794 + L1MB4 LINE L1 4500 4643 -1503 352 308 77 49 chr3 132062902 132063343 -95461235 + L1MB4 LINE L1 4762 5206 -940 413 297 102 34 chr3 132063391 132063951 -95460627 + L1MB4 LINE L1 5272 5884 -296 277 215 13 25 chr3 132064188 132064267 -95460311 + GA-rich Low_complexity Low_complexity 3 80 0 6883 62 6 0 chr3 132064279 132065732 -95458846 + L1PA7 LINE L1 4682 6139 -15 6920 62 6 5 chr3 132064851 132065746 -95458832 + L1PA7 LINE L1 5254 6149 -5 29 0 0 0 chr3 132066043 132066072 -95458506 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 132066879 132066902 -95457676 + AT_rich Low_complexity Low_complexity 1 23 0 5621 151 64 7 chr3 132067053 132067510 -95457068 + L1MC1 LINE L1 5164 5593 -740 423 57 143 0 chr3 132067510 132067580 -95456998 - MADE1 DNA Mariner 0 80 1 5621 151 64 7 chr3 132067580 132068149 -95456429 + L1MC1 LINE L1 5593 6258 -75 373 19 37 0 chr3 132068149 132068203 -95456375 + (TG)n Simple_repeat Simple_repeat 2 57 0 5621 151 64 7 chr3 132068203 132068278 -95456300 + L1MC1 LINE L1 6258 6327 -6 767 243 98 8 chr3 132068295 132068530 -95456048 + L1ME3A LINE L1 5902 6157 -13 702 266 50 35 chr3 132068684 132068943 -95455635 - LTR33A LTR ERVL -3 520 258 22 56 0 0 chr3 132069929 132069965 -95454613 + AT_rich Low_complexity Low_complexity 1 36 0 330 280 50 0 chr3 132070631 132070731 -95453847 - MIR SINE MIR -64 144 40 1791 148 136 0 chr3 132071681 132072011 -95452567 + THE1C LTR MaLR 1 375 0 24 0 0 0 chr3 132072246 132072270 -95452308 + AT_rich Low_complexity Low_complexity 1 24 0 1785 164 3 7 chr3 132073056 132073342 -95451236 - AluJo SINE Alu -27 285 1 437 282 82 26 chr3 132073543 132073738 -95450840 + L3 LINE CR1 1277 1482 -95 534 259 82 7 chr3 132073966 132074101 -95450477 + L2 LINE L2 3168 3312 -1 947 160 41 41 chr3 132074573 132074792 -95449786 + MER20 DNA MER1_type 1 219 0 193 273 45 30 chr3 132074830 132074896 -95449682 - L3 LINE CR1 -232 1345 1279 24 0 0 0 chr3 132075334 132075358 -95449220 + AT_rich Low_complexity Low_complexity 1 24 0 3887 150 26 14 chr3 132075360 132076085 -95448493 - L1MA4A LINE L1 -13 6290 5557 429 308 72 29 chr3 132127472 132127680 -95396898 + MIR SINE MIR 32 248 -14 6915 241 47 36 chr3 132129089 132131169 -95393409 - L1PBa LINE L1 -4161 2702 599 282 116 0 0 chr3 132131510 132131553 -95393025 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 728 187 0 0 chr3 132131566 132131673 -95392905 - FLAM_C SINE Alu -32 111 5 266 191 250 0 chr3 132131741 132131825 -95392753 - L2 LINE L2 -1 3312 3208 223 322 77 21 chr3 132131889 132132032 -95392546 - L2 LINE L2 0 3313 3163 185 295 139 16 chr3 132132217 132132346 -95392232 - L2 LINE L2 -437 2877 2733 327 373 44 0 chr3 132132478 132132636 -95391942 - L2 LINE L2 -590 2724 2560 55 56 0 0 chr3 132132876 132132966 -95391612 + AT_rich Low_complexity Low_complexity 1 90 0 5536 93 6 46 chr3 132133309 132133610 -95390968 - L1P LINE L1 -2794 3352 3040 2115 125 4 0 chr3 132133610 132133890 -95390688 - AluSp SINE Alu -32 281 1 5536 93 6 46 chr3 132133890 132134455 -95390123 - L1P LINE L1 -3106 3040 2521 382 304 47 47 chr3 132134573 132134744 -95389834 + MIR SINE MIR 92 262 0 6806 115 12 5 chr3 132135013 132136002 -95388576 + L1P3 LINE L1 11 1006 -5455 7213 65 11 2 chr3 132136170 132137390 -95387188 + L1PA7 LINE L1 4918 6143 -11 1497 122 9 22 chr3 132140909 132141138 -95383440 - AluSx SINE Alu -31 281 56 450 202 0 10 chr3 132142705 132142804 -95381774 + L1MC/D LINE L1 5633 5730 -2312 1001 237 53 16 chr3 132142809 132143130 -95381448 + MER41A LTR ERV1 1 333 -221 22 70 0 0 chr3 132144420 132144463 -95380115 + AT_rich Low_complexity Low_complexity 1 43 0 2358 167 33 6 chr3 132145457 132145937 -95378641 + Tigger1 DNA MER2_type 1925 2417 -1 1982 132 3 11 chr3 132145969 132146256 -95378322 + AluJo SINE Alu 11 295 -17 668 260 0 0 chr3 132146440 132146563 -95378015 + FLAM_C SINE Alu 2 124 -19 356 238 0 0 chr3 132147178 132147262 -95377316 - MIR SINE MIR 0 262 179 1091 273 19 13 chr3 132147262 132147570 -95377008 - MLT1A1 LTR MaLR 0 365 56 3049 214 33 27 chr3 132148309 132149148 -95375430 + L1 LINE L1 3181 4024 -2122 22 35 0 0 chr3 132150372 132150401 -95374177 + GC_rich Low_complexity Low_complexity 1 29 0 365 301 154 6 chr3 132153843 132153999 -95370579 - MER5A DNA MER1_type -2 187 9 1479 118 0 50 chr3 132154125 132154363 -95370215 - MER30 DNA MER1_type -4 226 1 595 233 153 12 chr3 132155861 132156024 -95368554 + MER5A DNA MER1_type 4 189 0 332 349 48 14 chr3 132158975 132159184 -95365394 + MIR SINE MIR 21 236 -26 1643 200 124 49 chr3 132159816 132160285 -95364293 - MLT1D LTR MaLR -1 504 1 239 220 17 17 chr3 132160428 132160487 -95364091 + MIR3 SINE MIR 125 183 -25 654 286 102 77 chr3 132160655 132161173 -95363405 + L3 LINE CR1 1044 1574 -3 198 0 0 0 chr3 132161587 132161609 -95362969 + (A)n Simple_repeat Simple_repeat 1 22 0 730 263 138 82 chr3 132162075 132162713 -95361865 + L1MC4a LINE L1 5255 5928 -1880 29 0 0 0 chr3 132162885 132162914 -95361664 + AT_rich Low_complexity Low_complexity 1 29 0 369 279 102 45 chr3 132163406 132163650 -95360928 - MIR SINE MIR -3 259 2 275 320 102 0 chr3 132168387 132168534 -95356044 - MIR SINE MIR -12 250 89 483 356 15 27 chr3 132168849 132169110 -95355468 + MIR SINE MIR 5 262 0 465 247 66 28 chr3 132169320 132169502 -95355076 + MER112 DNA MER1_type 65 253 -7 2544 181 76 27 chr3 132169650 132170240 -95354338 + L1MA9 LINE L1 5481 6099 -213 1459 129 0 9 chr3 132170423 132170656 -95353922 - AluSg/x SINE Alu 0 312 82 599 191 0 9 chr3 132170676 132170791 -95353787 - U5 snRNA snRNA 0 116 3 334 232 24 0 chr3 132170791 132170873 -95353705 + Tigger2 DNA MER2_type 46 129 -2589 1726 122 27 127 chr3 132170875 132171285 -95353293 + Tigger2 DNA MER2_type 2350 2718 0 13743 142 33 16 chr3 132171301 132173675 -95350903 - Tigger1 DNA MER2_type -2 2416 3 257 276 15 22 chr3 132173774 132173908 -95350670 + L1ME2 LINE L1 5198 5330 -816 859 137 0 0 chr3 132173975 132174092 -95350486 - FLAM_C SINE Alu -24 119 3 398 316 72 41 chr3 132174110 132174594 -95349984 + L1ME2 LINE L1 5381 5879 -285 617 203 8 0 chr3 132174608 132174716 -95349862 - MLT1B LTR MaLR -2 388 280 1938 137 22 53 chr3 132174716 132175074 -95349504 + THE1B LTR MaLR 1 347 -17 1596 143 48 34 chr3 132175072 132175366 -95349212 + THE1B LTR MaLR 67 364 0 * 1112 158 12 158 chr3 132175366 132175517 -95349061 - MLT1B LTR MaLR -105 285 208 1880 147 3 7 chr3 132175517 132175803 -95348775 - AluJo SINE Alu -23 289 5 1112 158 12 158 chr3 132175803 132175985 -95348593 - MLT1B LTR MaLR -182 208 1 2092 118 0 10 chr3 132175996 132176293 -95348285 - AluY SINE Alu -17 294 1 900 207 88 32 chr3 132178579 132178918 -95345660 + MSTD LTR MaLR 1 381 -15 24 32 0 0 chr3 132179065 132179096 -95345482 + AT_rich Low_complexity Low_complexity 1 31 0 264 344 32 0 chr3 132179197 132179290 -95345288 + MIR SINE MIR 20 115 -147 186 103 0 0 chr3 132180237 132180266 -95344312 + (TG)n Simple_repeat Simple_repeat 2 30 0 1979 270 56 18 chr3 132181674 132182303 -95342275 - L1ME3A LINE L1 -5 6165 5513 211 289 0 0 chr3 132183028 132183080 -95341498 + L2 LINE L2 3254 3305 -8 425 374 15 10 chr3 132183549 132183755 -95340823 + MIR SINE MIR 20 226 -36 296 308 103 23 chr3 132183811 132184025 -95340553 + L2 LINE L2 3083 3313 0 480 314 134 31 chr3 132184182 132184631 -95339947 - MARNA DNA Mariner -42 544 50 369 0 0 0 chr3 132184634 132184675 -95339903 + (CA)n Simple_repeat Simple_repeat 2 42 0 21 0 0 0 chr3 132186286 132186307 -95338271 + AT_rich Low_complexity Low_complexity 1 21 0 460 359 47 0 chr3 132186650 132186820 -95337758 + MIR3 SINE MIR 30 207 -1 24 0 0 0 chr3 132187147 132187171 -95337407 + AT_rich Low_complexity Low_complexity 1 24 0 429 81 0 0 chr3 132187984 132188046 -95336532 + (TCCA)n Simple_repeat Simple_repeat 4 65 0 562 280 96 51 chr3 132188291 132188623 -95335955 + L1MC4a LINE L1 5532 5878 -1930 712 191 74 11 chr3 132189287 132189476 -95335102 - L1MA9 LINE L1 -3 6309 6109 7338 145 41 9 chr3 132189476 132190751 -95333827 + Tigger1 DNA MER2_type 2 1317 -1101 7081 134 139 6 chr3 132190868 132191385 -95333193 + Tigger1 DNA MER2_type 918 1365 -1053 1227 78 12 0 chr3 132191385 132191551 -95333027 + L1PA8 LINE L1 6004 6171 -1 7081 134 139 6 chr3 132191551 132191805 -95332773 + Tigger1 DNA MER2_type 1365 1584 -834 7755 21 0 0 chr3 132191805 132193341 -95331237 + L1PA3 LINE L1 4618 6153 -2 7081 134 139 6 chr3 132193341 132193356 -95331222 + Tigger1 DNA MER2_type 1584 1596 -822 248 47 0 70 chr3 132193356 132193399 -95331179 + (AATAG)n Simple_repeat Simple_repeat 2 41 0 7081 134 139 6 chr3 132193399 132193934 -95330644 + Tigger1 DNA MER2_type 1596 2417 -1 1966 133 3 11 chr3 132193966 132194252 -95330326 + AluJo SINE Alu 11 294 -18 1479 246 0 0 chr3 132194436 132194724 -95329854 + AluJb SINE Alu 1 288 -24 286 243 46 86 chr3 132194816 132194968 -95329610 - L1M4 LINE L1 -1348 4798 4653 1442 111 15 46 chr3 132194981 132195243 -95329335 - L1MA9 LINE L1 -5 6307 6054 1478 133 8 25 chr3 132196044 132196285 -95328293 - AluSx SINE Alu -31 281 45 2399 66 3 0 chr3 132197307 132197608 -95326970 + AluY SINE Alu 1 302 -9 797 336 55 17 chr3 132197661 132198083 -95326495 + LTR16A LTR ERVL 7 444 -6 2675 321 73 34 chr3 132198085 132199426 -95325152 + HERV16 LTR ERVL 53 1446 -3550 250 258 0 0 chr3 132199605 132199671 -95324907 + HERV16 LTR ERVL 1743 1808 -3846 2394 328 58 28 chr3 132199707 132202021 -95322557 + HERV16 LTR ERVL 1870 4337 -1427 475 314 83 18 chr3 132202026 132202255 -95322323 + LTR16A LTR ERVL 201 444 -6 279 386 30 20 chr3 132203699 132203901 -95320677 + MIR3 SINE MIR 5 208 0 25 31 0 0 chr3 132203923 132203955 -95320623 + AT_rich Low_complexity Low_complexity 1 32 0 350 288 46 33 chr3 132204005 132204216 -95320362 - MIR SINE MIR -42 220 7 425 266 9 9 chr3 132204997 132205110 -95319468 + MER103 DNA DNA 44 156 -10 615 291 24 12 chr3 132205188 132205353 -95319225 - MIR3 SINE MIR -21 187 21 405 323 30 42 chr3 132207449 132207616 -95316962 - MIR SINE MIR -42 220 56 189 0 0 0 chr3 132208559 132208580 -95315998 + (A)n Simple_repeat Simple_repeat 1 21 0 225 328 41 16 chr3 132208600 132208722 -95315856 + MIR SINE MIR 73 197 -65 667 336 22 0 chr3 132208839 132209062 -95315516 + MIR SINE MIR 2 229 -33 227 257 27 27 chr3 132209477 132209551 -95315027 + L2 LINE L2 2937 3010 -262 21 89 0 0 chr3 132209794 132209850 -95314728 + AT_rich Low_complexity Low_complexity 1 56 0 23 54 0 0 chr3 132210635 132210672 -95313906 + AT_rich Low_complexity Low_complexity 1 37 0 1913 136 77 0 chr3 132210724 132211011 -95313567 + AluSx SINE Alu 1 309 -3 3954 89 11 0 chr3 132213447 132213988 -95310590 - L1PA10 LINE L1 -11 6157 5611 201 175 0 0 chr3 132215368 132215408 -95309170 + (TA)n Simple_repeat Simple_repeat 2 41 0 239 235 49 25 chr3 132216172 132216253 -95308325 - L2 LINE L2 -4 3309 3227 480 277 108 0 chr3 132217937 132218085 -95306493 + MIR SINE MIR 13 176 -86 1661 301 40 31 chr3 132218728 132219373 -95305205 - MER115 DNA AcHobo -26 667 17 260 184 13 66 chr3 132220450 132220526 -95304052 + (TATG)n Simple_repeat Simple_repeat 1 72 0 24 67 0 0 chr3 132220666 132220711 -95303867 + AT_rich Low_complexity Low_complexity 1 45 0 272 271 175 15 chr3 132221591 132221731 -95302847 - MIR SINE MIR -45 163 1 227 393 39 6 chr3 132224687 132224865 -95299713 + L2 LINE L2 3087 3270 -2 373 273 162 7 chr3 132226429 132226583 -95297995 + MIR SINE MIR 69 246 -16 224 275 0 72 chr3 132226598 132226667 -95297911 + L2 LINE L2 3250 3313 0 21 57 0 0 chr3 132228500 132228535 -95296043 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr3 132228605 132228633 -95295945 + AT_rich Low_complexity Low_complexity 1 28 0 250 244 144 33 chr3 132228638 132228728 -95295850 + MIR SINE MIR 30 129 -79 21 0 0 0 chr3 132228741 132228762 -95295816 + AT_rich Low_complexity Low_complexity 1 21 0 255 326 58 23 chr3 132229465 132229551 -95295027 - MIR SINE MIR -141 121 33 568 174 5 27 chr3 132230129 132230313 -95294265 + CT-rich Low_complexity Low_complexity 1 180 0 232 184 102 0 chr3 132230318 132230367 -95294211 - L2 LINE L2 -14 3299 3246 268 311 0 0 chr3 132230699 132230773 -95293805 + Charlie4 DNA MER1_type 1888 1961 0 416 210 0 0 chr3 132231805 132231908 -95292670 + L1MC/D LINE L1 5629 5731 -435 4078 69 22 16 chr3 132231910 132232286 -95292292 + MER41A LTR ERV1 1 382 -172 2034 118 7 13 chr3 132232286 132232592 -95291986 + AluSq SINE Alu 1 304 -9 4078 69 22 16 chr3 132232592 132232766 -95291812 + MER41A LTR ERV1 382 554 0 195 276 0 0 chr3 132233280 132233378 -95291200 + GA-rich Low_complexity Low_complexity 3 100 0 198 0 0 0 chr3 132234038 132234060 -95290518 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 10425 135 67 27 chr3 132234163 132237920 -95286658 + HUERS-P1 LTR ERV1 1 4801 -2787 291 347 35 35 chr3 132238266 132238283 -95286295 - MIR SINE MIR -49 213 197 1388 181 128 3 chr3 132238283 132238604 -95285974 + MER46B DNA MER2_type 1 236 0 291 347 35 35 chr3 132238604 132238785 -95285793 - MIR SINE MIR -64 198 15 386 259 68 74 chr3 132238960 132239122 -95285456 + MIR SINE MIR 2 162 -100 320 338 29 15 chr3 132239304 132239440 -95285138 - MIR3 SINE MIR -7 201 64 186 276 81 46 chr3 132239734 132239821 -95284757 - L2 LINE L2 -1 3271 3182 572 269 67 0 chr3 132239944 132240167 -95284411 + L1PBa LINE L1 3 240 -6623 6603 116 20 34 chr3 132240281 132241190 -95283388 + L1P LINE L1 2175 3064 -3082 2119 129 4 0 chr3 132241190 132241470 -95283108 + AluSp SINE Alu 1 281 -32 6603 116 20 34 chr3 132241470 132241783 -95282795 + L1P LINE L1 3064 3380 -2766 1993 145 3 10 chr3 132241970 132242267 -95282311 + AluJo SINE Alu 1 295 -17 1518 246 0 0 chr3 132242451 132242739 -95281839 + AluJb SINE Alu 1 288 -24 248 243 46 86 chr3 132242831 132242983 -95281595 - L1M4 LINE L1 -1348 4798 4653 1402 118 15 46 chr3 132242996 132243258 -95281320 - L1MA9 LINE L1 -5 6307 6054 256 365 34 39 chr3 132244121 132244329 -95280249 - L2 LINE L2 -548 2766 2560 23 54 0 0 chr3 132244572 132244609 -95279969 + AT_rich Low_complexity Low_complexity 1 37 0 1138 153 79 39 chr3 132244622 132244885 -95279693 - L1PB4 LINE L1 0 6151 5893 2020 138 0 10 chr3 132244948 132245244 -95279334 + AluSx SINE Alu 1 293 -19 210 324 0 39 chr3 132245759 132245919 -95278659 + G-rich Low_complexity Low_complexity 1 153 0 3771 133 3 5 chr3 132246040 132247195 -95277383 + L1PB3 LINE L1 4678 5829 -325 1253 117 5 30 chr3 132247195 132247392 -95277186 + AluY SINE Alu 1 192 -119 381 303 84 28 chr3 132248051 132248229 -95276349 + MIR SINE MIR 75 262 0 2020 166 69 10 chr3 132248498 132248993 -95275585 + L1P3 LINE L1 11 534 -5927 211 241 0 149 chr3 132249360 132249447 -95275131 - MIR SINE MIR -70 192 119 2243 102 6 10 chr3 132250012 132250325 -95274253 - AluSx SINE Alu 0 312 1 228 67 0 0 chr3 132250616 132250646 -95273932 + (T)n Simple_repeat Simple_repeat 1 30 0 272 271 175 15 chr3 132252279 132252419 -95272159 - MIR SINE MIR -45 163 1 23 35 6 0 chr3 132253815 132253890 -95270688 + AT_rich Low_complexity Low_complexity 1 37 0 7442 97 66 2 chr3 132254527 132255697 -95268881 + L1P LINE L1 3482 4726 -1420 21 57 0 0 chr3 132256336 132256371 -95268207 + AT_rich Low_complexity Low_complexity 1 35 0 304 275 0 0 chr3 132256999 132257090 -95267488 + C-rich Low_complexity Low_complexity 1 91 0 180 233 23 128 chr3 132257402 132257488 -95267090 - MIR SINE MIR -120 142 66 505 251 71 22 chr3 132258494 132258715 -95265863 - L1M4 LINE L1 -394 5727 5518 1556 180 3 14 chr3 132258844 132259127 -95265451 + AluSx SINE Alu 1 280 -32 29 60 0 0 chr3 132259139 132259189 -95265389 + AT_rich Low_complexity Low_complexity 1 50 0 25 0 0 0 chr3 132259412 132259437 -95265141 + AT_rich Low_complexity Low_complexity 1 25 0 1551 176 7 47 chr3 132259694 132260019 -95264559 - AluJb SINE Alu 0 313 1 543 345 82 32 chr3 132262200 132262661 -95261917 + L2 LINE L2 2829 3312 -1 25 0 0 0 chr3 132262969 132262994 -95261584 + AT_rich Low_complexity Low_complexity 1 25 0 180 0 0 0 chr3 132263466 132263486 -95261092 + (T)n Simple_repeat Simple_repeat 1 20 0 4032 234 45 35 chr3 132265456 132266796 -95257782 + L1PBa LINE L1 1310 2662 -4201 568 174 5 27 chr3 132267533 132267717 -95256861 + CT-rich Low_complexity Low_complexity 1 180 0 222 204 102 0 chr3 132267722 132267771 -95256807 - L2 LINE L2 -14 3299 3246 345 298 29 10 chr3 132269206 132269310 -95255268 - MIR SINE MIR -70 192 87 3178 158 20 40 chr3 132269473 132270167 -95254411 + PABL_A-int LTR ERV1 2357 3036 -1979 282 250 31 38 chr3 132270444 132270604 -95253974 + (CCCA)n Simple_repeat Simple_repeat 4 162 0 495 272 70 84 chr3 132271355 132271855 -95252723 - HAL1 LINE L1 -2013 494 2 198 0 0 0 chr3 132272452 132272474 -95252104 + (T)n Simple_repeat Simple_repeat 1 22 0 1974 104 4 0 chr3 132277011 132277291 -95247287 + AluY SINE Alu 1 281 -30 222 289 0 33 chr3 132277615 132277705 -95246873 + CT-rich Low_complexity Low_complexity 2 88 0 23 54 0 0 chr3 132278243 132278280 -95246298 + AT_rich Low_complexity Low_complexity 1 37 0 1742 147 85 0 chr3 132278332 132278604 -95245974 + AluSx SINE Alu 1 295 -17 1069 97 0 0 chr3 132279092 132279247 -95245331 - MER41A LTR ERV1 -376 178 24 1824 158 3 17 chr3 132279248 132279539 -95245039 + AluSx SINE Alu 1 287 -25 12430 96 20 4 chr3 132280164 132282214 -95242364 + MER41A-int LTR ERV1 3054 5944 -2 4087 76 7 32 chr3 132282214 132282253 -95242325 + MER41A LTR ERV1 1 39 -515 2176 130 0 16 chr3 132282253 132282568 -95242010 - AluSx SINE Alu -2 310 1 4087 76 7 32 chr3 132282568 132283096 -95241482 + MER41A LTR ERV1 39 554 0 1193 235 79 9 chr3 132283108 132283374 -95241204 + L1ME1 LINE L1 5741 5985 -181 313 22 43 0 chr3 132283374 132283420 -95241158 + (TG)n Simple_repeat Simple_repeat 1 48 0 1193 235 79 9 chr3 132283420 132283556 -95241022 + L1ME1 LINE L1 5985 6110 -56 228 254 0 0 chr3 132284553 132284612 -95239966 + A-rich Low_complexity Low_complexity 1 59 0 189 94 0 0 chr3 132285652 132285684 -95238894 + (T)n Simple_repeat Simple_repeat 1 32 0 293 294 58 48 chr3 132285933 132286513 -95238065 + L1MC/D LINE L1 2673 3263 -2883 2106 150 0 13 chr3 132286513 132286827 -95237751 - AluSx SINE Alu -2 310 1 293 294 58 48 chr3 132286827 132286959 -95237619 + L1MC/D LINE L1 3263 3392 -2754 489 275 172 24 chr3 132287036 132287495 -95237083 + MLT1G LTR MaLR 74 590 0 1631 335 84 51 chr3 132287495 132287723 -95236855 + L1MC/D LINE L1 3420 3639 -2822 2120 110 7 27 chr3 132287723 132288024 -95236554 + AluSx SINE Alu 6 300 -12 1631 335 84 51 chr3 132288024 132289947 -95234631 + L1MC/D LINE L1 3639 5650 -811 960 285 113 47 chr3 132289950 132290791 -95233787 + Charlie2b DNA MER1_type 1 990 -1792 444 226 115 10 chr3 132290873 132291081 -95233497 + Charlie2b DNA MER1_type 2297 2526 -256 1213 218 99 116 chr3 132291177 132292354 -95232224 + L1MC5 LINE L1 6745 7902 -59 1590 166 9 50 chr3 132292408 132292728 -95231850 + AluJb SINE Alu 1 307 -5 2348 107 0 0 chr3 132292734 132293044 -95231534 + AluSg SINE Alu 1 310 0 624 193 71 10 chr3 132293055 132293252 -95231326 + Charlie2b DNA MER1_type 2569 2777 -5 2006 82 0 0 chr3 132293424 132293669 -95230909 + AluSg1 SINE Alu 35 279 -30 190 0 67 0 chr3 132293672 132293702 -95230876 + (TAA)n Simple_repeat Simple_repeat 2 33 0 451 280 76 38 chr3 132293890 132294233 -95230345 - LTR16A LTR ERVL -78 372 17 279 269 239 35 chr3 132294919 132295120 -95229458 + MIR SINE MIR 21 262 0 372 367 82 22 chr3 132295670 132296073 -95228505 + L3 LINE CR1 576 1002 -575 404 214 0 0 chr3 132297087 132297171 -95227407 - MIR SINE MIR 0 262 179 1432 234 6 9 chr3 132297171 132297500 -95227078 - MLT1A1 LTR MaLR 0 365 38 1980 164 7 3 chr3 132297519 132297829 -95226749 + AluJb SINE Alu 1 311 -1 1630 100 0 8 chr3 132298547 132298807 -95225771 + L1PB1 LINE L1 5914 6175 -1517 7459 52 3 20 chr3 132298807 132300294 -95224284 + SVA Other Other 3 1385 -1 1630 100 0 8 chr3 132300294 132300328 -95224250 + L1PB1 LINE L1 6175 7692 0 310 308 115 24 chr3 132300531 132300862 -95223716 + MARNA DNA Mariner 6 366 -220 213 281 102 39 chr3 132301073 132301201 -95223377 + MIR SINE MIR 5 140 -122 732 279 30 30 chr3 132301254 132301555 -95223023 - MLT1H LTR MaLR -204 345 45 511 292 40 15 chr3 132301643 132301845 -95222733 - L2 LINE L2 -558 2756 2550 1593 180 7 11 chr3 132303737 132304020 -95220558 + AluSx SINE Alu 1 282 -30 540 0 0 0 chr3 132304020 132304080 -95220498 + (TAGA)n Simple_repeat Simple_repeat 1 60 0 410 53 18 0 chr3 132304231 132304288 -95220290 + (CA)n Simple_repeat Simple_repeat 2 59 0 2501 122 17 6 chr3 132305758 132306118 -95218460 + THE1B LTR MaLR 1 364 0 258 145 24 36 chr3 132306272 132306355 -95218223 + MER69 DNA AcHobo 2380 2461 -65 2205 123 36 0 chr3 132306379 132306681 -95217897 - AluSp SINE Alu 0 313 1 36 0 0 0 chr3 132306691 132306727 -95217851 + AT_rich Low_complexity Low_complexity 1 36 0 3298 90 20 6 chr3 132306727 132307215 -95217363 - L1MA1 LINE L1 -6 6296 5802 430 45 30 0 chr3 132307215 132307282 -95217296 + L1M LINE L1 5295 5363 -939 1858 121 20 156 chr3 132307383 132307889 -95216689 + LTR23 LTR ERV1 1 437 0 308 168 147 21 chr3 132309124 132309219 -95215359 - L1ME4a LINE L1 -2 6119 6013 253 339 41 8 chr3 132309320 132309441 -95215137 - MIR SINE MIR -126 136 12 22 70 0 0 chr3 132310241 132310284 -95214294 + AT_rich Low_complexity Low_complexity 1 43 0 200 222 0 22 chr3 132310685 132310730 -95213848 + GA-rich Low_complexity Low_complexity 3 46 0 187 265 20 0 chr3 132311261 132311310 -95213268 + L2 LINE L2 3211 3260 -12 424 174 71 0 chr3 132311919 132312017 -95212561 + L1MB7 LINE L1 6064 6168 -16 262 237 17 0 chr3 132312019 132312137 -95212441 + (TA)n Simple_repeat Simple_repeat 2 121 0 683 277 129 44 chr3 132312805 132313354 -95211224 + L2 LINE L2 1805 2400 -914 642 256 18 103 chr3 132313764 132313870 -95210708 - MIR SINE MIR -1 261 148 2395 62 0 56 chr3 132313870 132314190 -95210388 - AluY SINE Alu -9 302 1 642 256 18 103 chr3 132314190 132314356 -95210222 - MIR SINE MIR -114 148 12 1814 178 0 3 chr3 132314972 132315264 -95209314 - AluJo SINE Alu -21 291 1 48 18 0 0 chr3 132315386 132315441 -95209137 + AT_rich Low_complexity Low_complexity 1 55 0 25 99 0 0 chr3 132316865 132316946 -95207632 + AT_rich Low_complexity Low_complexity 1 81 0 357 305 8 62 chr3 132318357 132318485 -95206093 + MIR3 SINE MIR 47 167 -41 1875 160 6 13 chr3 132318499 132318812 -95205766 - AluSx SINE Alu -1 311 1 291 305 182 11 chr3 132319201 132319388 -95205190 - MIR SINE MIR -10 252 34 871 217 0 0 chr3 132319765 132319917 -95204661 - AluJb SINE Alu -25 287 136 1991 105 0 7 chr3 132320655 132320931 -95203647 - AluY SINE Alu -2 309 36 266 336 68 7 chr3 132321355 132321546 -95203032 + MIR SINE MIR 21 220 -42 381 22 0 0 chr3 132321789 132321835 -95202743 + (TG)n Simple_repeat Simple_repeat 2 47 0 1721 180 0 7 chr3 132321838 132322122 -95202456 - AluJo SINE Alu -30 282 1 1882 149 4 0 chr3 132324414 132324723 -95199855 - AluSx SINE Alu 0 314 5 323 355 7 29 chr3 132324852 132324990 -95199588 + MIR3 SINE MIR 26 160 -48 513 309 22 11 chr3 132325061 132325239 -95199339 - MIR SINE MIR -33 229 50 2767 23 0 0 chr3 132326729 132327039 -95197539 - AluY SINE Alu -1 310 1 1717 172 0 14 chr3 132327308 132327599 -95196979 - AluJo SINE Alu -25 287 1 310 344 66 0 chr3 132327916 132328067 -95196511 + MIR SINE MIR 89 249 -13 2144 123 7 0 chr3 132328370 132328750 -95195828 + AluSq SINE Alu 1 382 0 725 263 67 10 chr3 132328753 132328962 -95195616 + MIR SINE MIR 21 241 -21 394 330 5 52 chr3 132329227 132329317 -95195261 + MER5A DNA MER1_type 2 80 -109 609 227 8 0 chr3 132329317 132329449 -95195129 + MER94 DNA DNA 1 133 -1 394 330 5 52 chr3 132329449 132329549 -95195029 + MER5A DNA MER1_type 80 183 -6 180 111 0 0 chr3 132329652 132329679 -95194899 + (GAAA)n Simple_repeat Simple_repeat 3 29 0 3422 311 65 99 chr3 132330093 132330413 -95194165 + L2 LINE L2 329 658 -2655 1564 196 39 0 chr3 132330413 132330699 -95193879 + AluJb SINE Alu 1 297 -15 3422 311 65 99 chr3 132330699 132332211 -95192367 + L2 LINE L2 658 2219 -1094 399 245 29 106 chr3 132332211 132332419 -95192159 + L1MC5 LINE L1 7719 7910 -51 3422 311 65 99 chr3 132332419 132333053 -95191525 + L2 LINE L2 2219 2908 -405 2715 104 3 5 chr3 132333053 132333429 -95191149 + THE1C LTR MaLR 1 375 0 3422 311 65 99 chr3 132333429 132333793 -95190785 + L2 LINE L2 2908 3283 -30 2171 250 85 39 chr3 132336529 132337415 -95187163 - L1ME2 LINE L1 -13 6151 5224 498 103 0 0 chr3 132338159 132338246 -95186332 + (TA)n Simple_repeat Simple_repeat 1 87 0 373 200 16 0 chr3 132338342 132338451 -95186127 - AluJ/monomer SINE Alu -247 52 7 672 236 23 14 chr3 132338451 132338671 -95185907 - L1ME2 LINE L1 -1043 5103 4882 1608 182 71 31 chr3 132338681 132339032 -95185546 - MLT1A1 LTR MaLR 0 365 1 618 352 127 15 chr3 132339277 132339748 -95184830 - L2 LINE L2 -2704 610 87 2529 64 0 0 chr3 132339839 132340137 -95184441 - AluY SINE Alu -13 298 1 1426 184 67 54 chr3 132341584 132341975 -95182603 - MSTD LTR MaLR 0 396 1 339 330 0 8 chr3 132342274 132342392 -95182186 + (TATATG)n Simple_repeat Simple_repeat 3 119 0 1045 158 22 0 chr3 132342392 132342576 -95182002 - L1MC4 LINE L1 -147 7895 7708 506 315 118 25 chr3 132342763 132343001 -95181577 - MIR SINE MIR 0 262 3 339 309 30 47 chr3 132343149 132343382 -95181196 + L2 LINE L2 3076 3304 -9 256 242 65 0 chr3 132343400 132343462 -95181116 - MIR SINE MIR -56 152 87 22 0 0 0 chr3 132343465 132343487 -95181091 + AT_rich Low_complexity Low_complexity 1 22 0 733 224 50 12 chr3 132343487 132343648 -95180930 - FRAM SINE Alu -9 167 1 435 340 42 0 chr3 132344668 132344812 -95179766 - MIR SINE MIR -110 152 3 276 30 0 0 chr3 132345215 132345248 -95179330 + (TG)n Simple_repeat Simple_repeat 2 34 0 1027 172 0 21 chr3 132345464 132345677 -95178901 + AluSc SINE Alu 100 308 0 581 264 136 35 chr3 132345683 132346081 -95178497 - L1MC/D LINE L1 -2117 5691 5254 231 285 167 14 chr3 132346296 132346517 -95178061 - L1MC/D LINE L1 -1127 5019 4765 331 314 31 18 chr3 132347309 132347535 -95177043 - L1MC/D LINE L1 -2202 3944 3716 21 36 0 0 chr3 132347845 132347873 -95176705 + AT_rich Low_complexity Low_complexity 1 28 0 2442 70 0 0 chr3 132348131 132348429 -95176149 - AluSp SINE Alu -15 298 1 1561 171 7 52 chr3 132348581 132348890 -95175688 - AluSx SINE Alu -17 295 1 351 0 0 0 chr3 132348940 132348979 -95175599 + (A)n Simple_repeat Simple_repeat 1 39 0 556 276 4 4 chr3 132349116 132349344 -95175234 - L1PA7 LINE L1 -1 6153 5926 686 77 67 9 chr3 132349907 132350041 -95174537 - L1PA7 LINE L1 -90 6065 5919 25 0 0 0 chr3 132350765 132350790 -95173788 + AT_rich Low_complexity Low_complexity 1 25 0 439 156 0 0 chr3 132351534 132351611 -95172967 + MADE1 DNA Mariner 4 80 0 234 0 0 0 chr3 132351643 132351669 -95172909 + (CA)n Simple_repeat Simple_repeat 1 26 0 1609 182 3 21 chr3 132351675 132351961 -95172617 - AluJo SINE Alu -30 282 2 1269 213 163 34 chr3 132352965 132353412 -95171166 + MLT1D LTR MaLR 1 505 0 744 298 13 39 chr3 132353890 132354165 -95170413 + MLT1H LTR MaLR 1 311 -238 282 208 0 0 chr3 132354332 132354385 -95170193 + MLT1H LTR MaLR 497 549 0 1121 180 52 119 chr3 132354498 132354886 -95169692 + MLT1B LTR MaLR 29 390 0 449 309 19 12 chr3 132355013 132355175 -95169403 + MARNA DNA Mariner 340 502 -84 288 0 0 0 chr3 132356666 132356698 -95167880 + (T)n Simple_repeat Simple_repeat 1 32 0 612 361 108 14 chr3 132357187 132357633 -95166945 + L2 LINE L2 2421 2908 -406 3867 70 0 0 chr3 132357972 132358470 -95166108 + L1PA8 LINE L1 5674 6171 -1 365 215 60 79 chr3 132362844 132362996 -95161582 + MIR SINE MIR 34 191 -71 278 281 88 76 chr3 132363469 132363707 -95160871 - L3 LINE CR1 -28 1549 1309 1139 197 114 16 chr3 132363713 132364032 -95160546 + MLT1A1 LTR MaLR 3 363 -2 622 301 37 23 chr3 132365668 132365884 -95158694 - MIR SINE MIR -9 253 35 461 237 49 46 chr3 132365908 132366045 -95158533 + MIR SINE MIR 57 190 -65 259 318 128 38 chr3 132367188 132367399 -95157179 + MIR SINE MIR 28 257 -5 360 294 42 17 chr3 132367499 132367618 -95156960 - MIR SINE MIR -66 142 21 200 311 47 28 chr3 132368532 132368638 -95155940 - L2 LINE L2 -41 3272 3165 895 278 46 33 chr3 132368762 132369173 -95155405 + LTR16C LTR ERVL 1 490 -1 180 0 0 0 chr3 132370980 132371000 -95153578 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 186 340 47 38 chr3 132371352 132371458 -95153120 - L2 LINE L2 -8 3264 3158 1844 126 68 0 chr3 132374083 132374418 -95150160 + AluSx SINE Alu 1 353 0 23 0 0 0 chr3 132374613 132374636 -95149942 + AT_rich Low_complexity Low_complexity 1 23 0 190 372 0 26 chr3 132375963 132376041 -95148537 + L3 LINE CR1 215 290 -1287 204 250 0 0 chr3 132376327 132376375 -95148203 + (TA)n Simple_repeat Simple_repeat 2 49 0 361 255 167 0 chr3 132376400 132376502 -95148076 + L3 LINE CR1 650 768 -809 236 288 43 86 chr3 132376846 132377009 -95147569 + L3 LINE CR1 891 1046 -531 199 306 14 28 chr3 132379099 132379171 -95145407 + MIR3 SINE MIR 111 181 -27 188 236 0 55 chr3 132379568 132379623 -95144955 + MIR SINE MIR 105 156 -106 939 250 27 23 chr3 132380056 132380312 -95144266 + MIR SINE MIR 6 262 0 2063 210 164 38 chr3 132380340 132381074 -95143504 + LTR1B LTR ERV1 1 826 0 451 369 30 12 chr3 132381519 132381687 -95142891 + L2 LINE L2 3102 3272 0 357 276 0 10 chr3 132382390 132382488 -95142090 - MIR SINE MIR -71 137 41 479 236 57 99 chr3 132383067 132383330 -95141248 - MER112 DNA MER1_type -8 252 1 244 365 58 0 chr3 132384479 132384583 -95139995 - MIR3 SINE MIR -7 201 92 278 301 68 19 chr3 132384841 132384944 -95139634 - MIR SINE MIR -147 115 8 594 230 20 0 chr3 132387440 132387588 -95136990 + MER103 DNA DNA 9 159 -7 2184 130 0 9 chr3 132387604 132387919 -95136659 - AluSx SINE Alu 0 312 1 298 337 0 30 chr3 132387965 132388066 -95136512 - MIR3 SINE MIR -30 178 81 2073 223 12 46 chr3 132388185 132388613 -95135965 + L1ME1 LINE L1 5592 5996 -170 2259 122 48 20 chr3 132388613 132388967 -95135611 - THE1B LTR MaLR 0 364 1 2073 223 12 46 chr3 132388967 132389129 -95135449 + L1ME1 LINE L1 5996 6162 -4 21 82 0 0 chr3 132389797 132389846 -95134732 + AT_rich Low_complexity Low_complexity 1 49 0 511 327 24 12 chr3 132389966 132390134 -95134444 + MIR3 SINE MIR 16 185 -23 1581 104 0 0 chr3 132390646 132390877 -95133701 + AluSg/x SINE Alu 80 310 0 405 153 10 31 chr3 132391216 132391314 -95133264 + CT-rich Low_complexity Low_complexity 2 97 0 268 219 125 0 chr3 132392274 132392338 -95132240 - MIR SINE MIR -179 83 12 571 171 29 0 chr3 132392551 132392656 -95131922 - AluSg/x SINE Alu -15 294 187 412 250 10 20 chr3 132392718 132392818 -95131760 + MIR SINE MIR 66 164 -98 202 270 0 45 chr3 132393493 132393582 -95130996 + A-rich Low_complexity Low_complexity 1 85 0 245 290 47 47 chr3 132394262 132394369 -95130209 + MIR SINE MIR 23 129 -133 252 86 0 0 chr3 132394386 132394421 -95130157 + (TG)n Simple_repeat Simple_repeat 1 35 0 400 83 0 42 chr3 132395889 132395961 -95128617 + (TTTC)n Simple_repeat Simple_repeat 4 72 0 2336 86 0 0 chr3 132396955 132397245 -95127333 + AluY SINE Alu 1 290 -21 289 342 27 18 chr3 132398023 132398134 -95126444 - MIR SINE MIR -131 131 20 1073 204 56 56 chr3 132398468 132398792 -95125786 - MER33 DNA MER1_type 0 324 1 282 233 0 0 chr3 132399051 132399111 -95125467 - MIR SINE MIR -112 150 91 288 322 93 19 chr3 132399404 132399609 -95124969 + L3b LINE CR1 1266 1485 -98 207 243 71 43 chr3 132400062 132400132 -95124446 - L2 LINE L2 -4 3309 3238 584 185 86 32 chr3 132400132 132400309 -95124269 - MER34 LTR ERV1 0 574 370 780 146 0 16 chr3 132400317 132400440 -95124138 - FRAM SINE Alu -21 155 35 633 208 33 55 chr3 132400440 132400623 -95123955 - MER39 LTR ERV1 -174 533 355 1171 163 48 7 chr3 132400756 132401119 -95123459 - MSTB LTR MaLR 0 426 1 648 226 39 0 chr3 132401134 132401282 -95123296 - MER34 LTR ERV1 -419 123 1 579 254 36 0 chr3 132401286 132401424 -95123154 + MLT1J2 LTR MaLR 1 143 -307 254 128 43 43 chr3 132401470 132401517 -95123061 + MLT1J1 LTR MaLR 238 284 -162 236 118 0 0 chr3 132401599 132401633 -95122945 + MLT1J1 LTR MaLR 413 446 0 220 188 16 47 chr3 132401653 132401717 -95122861 - L2 LINE L2 -94 3219 3158 652 223 0 0 chr3 132401836 132401966 -95122612 - FLAM_A SINE Alu -3 139 10 349 286 88 28 chr3 132402262 132402438 -95122140 + MIR3 SINE MIR 6 191 -17 315 0 0 0 chr3 132402742 132402777 -95121801 + (CA)n Simple_repeat Simple_repeat 2 36 0 2335 84 3 0 chr3 132403576 132403875 -95120703 + AluY SINE Alu 1 300 -11 2217 106 3 7 chr3 132404062 132404363 -95120215 - AluSx SINE Alu -12 300 1 274 251 154 11 chr3 132404505 132404692 -95119886 + L1MC/D LINE L1 5669 5880 -299 365 188 12 0 chr3 132404731 132404816 -95119762 + (TCTA)n Simple_repeat Simple_repeat 4 89 0 429 20 0 0 chr3 132405103 132405153 -95119425 + (TA)n Simple_repeat Simple_repeat 1 50 0 669 254 57 16 chr3 132405318 132405511 -95119067 + MIR3 SINE MIR 5 205 -3 1367 170 8 12 chr3 132408380 132408621 -95115957 - AluSx SINE Alu -18 294 55 22 0 0 0 chr3 132408626 132408648 -95115930 + AT_rich Low_complexity Low_complexity 1 22 0 2340 84 0 0 chr3 132409110 132409407 -95115171 + AluY SINE Alu 1 297 -14 22 0 0 0 chr3 132409416 132409438 -95115140 + AT_rich Low_complexity Low_complexity 1 22 0 2054 92 9 57 chr3 132410087 132410403 -95114175 - AluSx SINE Alu -11 301 1 1927 140 0 6 chr3 132411803 132412117 -95112461 + AluSq SINE Alu 1 312 -1 214 193 18 35 chr3 132412639 132412696 -95111882 + MIR3 SINE MIR 12 67 -141 301 295 0 30 chr3 132412732 132412898 -95111680 + (TA)n Simple_repeat Simple_repeat 1 161 0 1927 191 21 5 chr3 132412900 132413277 -95111301 + Tigger2a DNA MER2_type 7 389 -45 250 169 121 48 chr3 132413392 132413475 -95111103 - L1MC4 LINE L1 -1340 6702 6614 35 0 0 0 chr3 132413590 132413625 -95110953 + AT_rich Low_complexity Low_complexity 1 35 0 325 302 78 0 chr3 132414187 132414303 -95110275 - MIR SINE MIR -29 233 109 206 281 47 0 chr3 132414390 132414454 -95110124 - L2 LINE L2 0 3313 3247 200 191 0 0 chr3 132414709 132414751 -95109827 + L2 LINE L2 3272 3313 0 2117 132 36 33 chr3 132415668 132416031 -95108547 + THE1B LTR MaLR 1 364 0 193 333 152 0 chr3 132418026 132418125 -95106453 + MIR SINE MIR 123 236 -26 1787 174 37 0 chr3 132419058 132419356 -95105222 - AluJb SINE Alu -3 309 1 2178 137 0 3 chr3 132420131 132420444 -95104134 + AluSx SINE Alu 1 312 0 318 50 0 0 chr3 132420466 132420506 -95104072 + (CA)n Simple_repeat Simple_repeat 2 41 0 586 321 128 30 chr3 132420891 132421296 -95103282 - L3 LINE CR1 -79 1498 1054 23 0 0 0 chr3 132422646 132422669 -95101909 + AT_rich Low_complexity Low_complexity 1 23 0 556 287 79 0 chr3 132422751 132422915 -95101663 + MER117 DNA MER1_type 5 181 -16 443 349 37 11 chr3 132423059 132423248 -95101330 - MIR SINE MIR -12 250 57 591 83 115 0 chr3 132423533 132423652 -95100926 - AluSg/x SINE Alu 0 309 180 180 111 0 0 chr3 132423853 132423880 -95100698 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 2487 77 0 0 chr3 132423891 132424202 -95100376 + AluY SINE Alu 1 311 0 2410 92 0 0 chr3 132424401 132424707 -95099871 + AluSx SINE Alu 1 306 -6 27 29 0 0 chr3 132425714 132425748 -95098830 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr3 132426336 132426357 -95098221 + AT_rich Low_complexity Low_complexity 1 21 0 345 169 0 0 chr3 132426361 132426426 -95098152 - L1MA6 LINE L1 -2 6298 6234 2229 59 14 7 chr3 132426864 132427150 -95097428 - AluY SINE Alu -23 288 1 306 286 135 73 chr3 132428350 132428542 -95096036 - MIR SINE MIR -11 251 48 315 328 36 62 chr3 132428769 132428961 -95095617 + MIR SINE MIR 73 259 -3 2272 274 111 19 chr3 132429145 132429751 -95094827 + L2 LINE L2 2108 2823 -490 2070 144 38 22 chr3 132429751 132430120 -95094458 - THE1C LTR MaLR 0 375 1 2272 274 111 19 chr3 132430120 132430366 -95094212 + L2 LINE L2 2823 3045 -268 281 239 0 14 chr3 132431397 132431468 -95093110 + L2 LINE L2 3244 3313 0 370 320 6 39 chr3 132431487 132431643 -95092935 - L3 LINE CR1 -92 1485 1335 180 349 16 0 chr3 132433616 132433679 -95090899 + L2 LINE L2 3246 3309 -4 236 323 43 12 chr3 132434477 132434641 -95089937 + LTR67 LTR ERVL 379 547 -10 4781 152 40 9 chr3 132436281 132437737 -95086841 + L1PA15 LINE L1 4680 6161 -4 454 339 110 30 chr3 132437772 132438200 -95086378 - MLT1J LTR MaLR -49 462 1 674 305 34 38 chr3 132439135 132439397 -95085181 + MIR SINE MIR 1 261 -1 549 0 0 0 chr3 132439906 132439967 -95084611 + (TA)n Simple_repeat Simple_repeat 2 62 0 915 177 2 13 chr3 132440394 132440575 -95084003 + L1PA15 LINE L1 5935 6114 -54 234 319 43 11 chr3 132440597 132440691 -95083887 - MIR3 SINE MIR -54 154 58 381 262 205 16 chr3 132440902 132441024 -95083554 + MER5A DNA MER1_type 15 159 -30 1661 204 54 85 chr3 132442169 132442452 -95082126 + MLT1D LTR MaLR 1 262 -243 1589 116 36 22 chr3 132442452 132442535 -95082043 + L1MA4 LINE L1 6010 6090 -210 1733 148 70 25 chr3 132442535 132442894 -95081684 - THE1C LTR MaLR 0 375 1 1589 116 36 22 chr3 132442894 132443086 -95081492 + L1MA4 LINE L1 6090 6289 -11 1661 204 54 85 chr3 132443086 132443322 -95081256 + MLT1D LTR MaLR 262 504 -1 2326 97 0 25 chr3 132443486 132443806 -95080772 + AluSx SINE Alu 1 312 0 300 93 0 0 chr3 132444022 132444065 -95080513 - MADE1 DNA Mariner -37 43 1 27 0 0 0 chr3 132445271 132445298 -95079280 + AT_rich Low_complexity Low_complexity 1 27 0 680 208 8 0 chr3 132445577 132445702 -95078876 - FLAM_A SINE Alu -7 126 1 244 385 90 21 chr3 132446069 132446303 -95078275 + MIR SINE MIR 7 256 -6 244 260 27 0 chr3 132446340 132446490 -95078088 + (TA)n Simple_repeat Simple_repeat 1 154 0 2533 221 24 5 chr3 132447403 132448032 -95076546 + L1MB2 LINE L1 3583 4223 -1923 1680 218 28 34 chr3 132448034 132448506 -95076072 + L1MB2 LINE L1 4330 4798 -1348 2588 185 17 11 chr3 132448509 132449040 -95075538 + L1MB2 LINE L1 5635 6168 -3 3469 151 46 7 chr3 132449107 132449710 -95074868 + Tigger1 DNA MER2_type 1792 2418 0 295 167 61 45 chr3 132449712 132449778 -95074800 - MER63 DNA MER1_type -143 693 1 750 262 111 9 chr3 132450355 132450580 -95073998 - MIR SINE MIR 0 262 15 534 330 116 49 chr3 132450808 132451238 -95073340 + L3 LINE CR1 981 1439 -138 329 273 281 14 chr3 132451401 132451540 -95073038 + L3 LINE CR1 1389 1564 -13 704 225 146 33 chr3 132452306 132452519 -95072059 + MIR SINE MIR 11 247 -15 804 182 76 20 chr3 132453144 132453342 -95071236 - MER3 DNA MER1_type 0 209 1 245 75 25 0 chr3 132454983 132455023 -95069555 + (TG)n Simple_repeat Simple_repeat 2 42 0 225 287 108 27 chr3 132456234 132456457 -95068121 - L1ME4a LINE L1 -157 5964 5724 400 294 87 87 chr3 132456921 132457123 -95067455 - L1ME4a LINE L1 -1940 4206 4005 2346 66 0 3 chr3 132457123 132457438 -95067140 - AluY SINE Alu 0 314 1 400 294 87 87 chr3 132457438 132457925 -95066653 - L1ME4a LINE L1 -2140 4006 3516 378 0 0 0 chr3 132458196 132458238 -95066340 + (TG)n Simple_repeat Simple_repeat 2 43 0 1370 210 88 10 chr3 132458493 132458788 -95065790 - MLT1A1 LTR MaLR 0 365 48 761 259 46 73 chr3 132460988 132461316 -95063262 + MLT1B LTR MaLR 72 390 0 22 0 0 0 chr3 132461967 132461989 -95062589 + AT_rich Low_complexity Low_complexity 1 22 0 303 28 0 0 chr3 132463285 132463321 -95061257 + (TG)n Simple_repeat Simple_repeat 2 37 0 285 281 116 27 chr3 132463779 132463925 -95060653 - L2 LINE L2 0 3313 3155 661 239 68 0 chr3 132463926 132464102 -95060476 - MLT1K LTR MaLR -4 584 397 266 50 25 0 chr3 132464103 132464143 -95060435 + (TC)n Simple_repeat Simple_repeat 2 42 0 2239 93 7 26 chr3 132465132 132465442 -95059136 - AluSq SINE Alu -9 304 1 248 281 101 0 chr3 132465691 132465780 -95058798 + L2 LINE L2 3161 3258 -55 2236 89 0 0 chr3 132466323 132466639 -95057939 + AluY SINE Alu 1 316 0 265 323 54 0 chr3 132467093 132467186 -95057392 + MER91C DNA MER1_type 2 99 -41 453 281 8 23 chr3 132467201 132467329 -95057249 - MIR SINE MIR -88 174 49 22 0 0 0 chr3 132467356 132467378 -95057200 + AT_rich Low_complexity Low_complexity 1 22 0 2202 179 49 5 chr3 132467701 132468109 -95056469 + MSTB LTR MaLR 1 426 0 182 200 57 0 chr3 132468152 132468187 -95056391 - MER5A DNA MER1_type -38 151 115 184 333 0 0 chr3 132468209 132468257 -95056321 + MER5A DNA MER1_type 142 189 0 477 307 73 16 chr3 132468495 132468687 -95055891 + MIR SINE MIR 11 213 -49 317 328 76 30 chr3 132469602 132469733 -95054845 - MIR3 SINE MIR -39 169 33 22 35 0 0 chr3 132470051 132470080 -95054498 + AT_rich Low_complexity Low_complexity 1 29 0 505 250 133 0 chr3 132470511 132470667 -95053911 - MER5A DNA MER1_type -6 183 4 320 353 70 53 chr3 132470870 132471404 -95053174 + L2 LINE L2 2660 3204 -68 30 0 0 0 chr3 132473151 132473181 -95051397 + AT_rich Low_complexity Low_complexity 1 30 0 207 100 0 0 chr3 132473707 132473737 -95050841 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 15496 142 21 3 chr3 132473884 132476259 -95048319 + L1M1 LINE L1 10 2428 -5137 3034 104 17 8 chr3 132476259 132476729 -95047849 + L1MA3 LINE L1 5832 6305 0 377 342 150 5 chr3 132476982 132477169 -95047409 - MIR SINE MIR -1 261 48 21 0 0 0 chr3 132477380 132477401 -95047177 + AT_rich Low_complexity Low_complexity 1 21 0 206 222 133 0 chr3 132477469 132477514 -95047064 - L3 LINE CR1 -81 1496 1446 25 51 0 0 chr3 132478279 132478318 -95046260 + AT_rich Low_complexity Low_complexity 1 39 0 274 290 129 26 chr3 132478518 132478673 -95045905 - MIR SINE MIR 0 262 92 454 238 12 76 chr3 132479233 132479405 -95045173 - MER104 DNA Tc2 -19 161 1 322 301 35 9 chr3 132479538 132479651 -95044927 + MIR SINE MIR 7 122 -140 205 235 185 34 chr3 132479790 132479909 -95044669 + MIR SINE MIR 124 260 -2 195 42 0 0 chr3 132481005 132481029 -95043549 + (TA)n Simple_repeat Simple_repeat 2 25 0 1985 81 15 0 chr3 132481035 132481307 -95043271 - L1PA8 LINE L1 -13 6159 5884 2337 115 22 8 chr3 132481895 132482251 -95042327 + THE1C LTR MaLR 1 361 -14 232 250 0 0 chr3 132482827 132482879 -95041699 - MIR SINE MIR -18 244 193 1855 146 22 81 chr3 132483079 132483449 -95041129 - MER7A DNA MER2_type 0 346 1 280 298 12 24 chr3 132485348 132485432 -95039146 + MIR SINE MIR 43 125 -83 582 268 87 5 chr3 132485456 132485684 -95038894 + MIR SINE MIR 18 262 0 24 53 0 0 chr3 132486428 132486466 -95038112 + AT_rich Low_complexity Low_complexity 1 38 0 331 224 13 0 chr3 132486668 132486744 -95037834 + MER116 DNA Mariner 4 80 0 249 180 0 0 chr3 132490550 132490600 -95033978 + T-rich Low_complexity Low_complexity 4 53 0 254 349 68 34 chr3 132492474 132492620 -95031958 + MIR SINE MIR 28 178 -84 226 345 7 21 chr3 132493908 132494050 -95030528 + GA-rich Low_complexity Low_complexity 1 140 0 24 32 0 0 chr3 132494225 132494256 -95030322 + AT_rich Low_complexity Low_complexity 1 31 0 1889 117 0 0 chr3 132494339 132494620 -95029958 - L1PA13 LINE L1 0 6163 5883 1298 122 10 15 chr3 132495717 132495914 -95028664 - AluSq SINE Alu -15 298 103 21 0 0 0 chr3 132496358 132496379 -95028199 + AT_rich Low_complexity Low_complexity 1 21 0 231 88 0 0 chr3 132496906 132496940 -95027638 + (CA)n Simple_repeat Simple_repeat 2 35 0 339 368 66 0 chr3 132497922 132498058 -95026520 - MIR SINE MIR -75 187 43 1461 300 35 11 chr3 132498411 132498864 -95025714 + LTR16B LTR ERVL 1 464 0 203 335 58 73 chr3 132499446 132499914 -95024664 + L2 LINE L2 2182 2642 -672 180 286 308 0 chr3 132500541 132500632 -95023946 + L2 LINE L2 3190 3308 -5 193 206 16 16 chr3 132502218 132502281 -95022297 + CT-rich Low_complexity Low_complexity 1 63 0 255 93 0 0 chr3 132502281 132502324 -95022254 + (CA)n Simple_repeat Simple_repeat 1 43 0 357 24 0 0 chr3 132503040 132503082 -95021496 + (TG)n Simple_repeat Simple_repeat 1 42 0 2049 81 4 0 chr3 132503107 132503368 -95021210 - AluY SINE Alu -11 300 39 1318 207 67 42 chr3 132503518 132503876 -95020702 - MER63 DNA MER1_type 0 1060 694 2205 153 8 19 chr3 132503886 132504264 -95020314 + Tigger1 DNA MER2_type 24 397 -2021 669 135 9 0 chr3 132504274 132504385 -95020193 - L1PA15 LINE L1 -10 6155 6044 327 140 18 0 chr3 132504390 132504447 -95020131 + Alu SINE Alu 241 298 -2 4802 140 7 23 chr3 132504459 132505356 -95019222 - L1PA15 LINE L1 -104 6061 5171 4774 146 28 21 chr3 132505356 132506221 -95018357 + Tigger1 DNA MER2_type 382 1252 -1166 186 43 0 0 chr3 132506309 132506332 -95018246 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 457 43 0 58 chr3 132506338 132506407 -95018171 - L1MA2 LINE L1 -6 6298 6234 3725 153 7 0 chr3 132506409 132507019 -95017559 + Tigger1 DNA MER2_type 1251 1864 -554 3246 248 35 40 chr3 132507025 132507086 -95017492 + L1 LINE L1 2380 2440 -3706 360 0 0 0 chr3 132507086 132507126 -95017452 + (TA)n Simple_repeat Simple_repeat 1 40 0 3246 248 35 40 chr3 132507126 132507874 -95016704 + L1 LINE L1 2440 3184 -2962 20054 35 8 4 chr3 132507874 132511085 -95013493 + L1PA4 LINE L1 2941 6155 0 3246 248 35 40 chr3 132511085 132511462 -95013116 + L1 LINE L1 3184 3561 -2585 442 261 22 22 chr3 132511664 132511798 -95012780 - MLT1F1 LTR MaLR -418 149 16 645 291 180 8 chr3 132512289 132512650 -95011928 - MLT1D LTR MaLR 0 505 83 233 37 0 0 chr3 132513787 132513814 -95010764 + (T)n Simple_repeat Simple_repeat 1 27 0 1848 39 13 4 chr3 132514051 132514285 -95010293 - L1PA7 LINE L1 0 6154 5919 283 290 67 78 chr3 132570249 132570442 -94954136 - L3 LINE CR1 -438 1139 949 348 148 0 0 chr3 132570598 132570659 -94953919 + (TCCCC)n Simple_repeat Simple_repeat 5 65 0 1529 178 3 39 chr3 132570671 132570957 -94953621 - AluJo SINE Alu -32 280 5 259 324 28 0 chr3 132571144 132571215 -94953363 - L2 LINE L2 -9 3304 3232 509 261 62 31 chr3 132571881 132572042 -94952536 + MIR SINE MIR 97 262 0 21 57 0 0 chr3 132572711 132572746 -94951832 + AT_rich Low_complexity Low_complexity 1 35 0 672 283 75 12 chr3 132573922 132574162 -94950416 - MIR SINE MIR 0 262 8 491 287 28 91 chr3 132576528 132576782 -94947796 + MIR SINE MIR 25 262 0 301 265 149 51 chr3 132576852 132577067 -94947511 - HAL1 LINE L1 -1217 1290 1055 2207 116 7 7 chr3 132577160 132577470 -94947108 + AluSg SINE Alu 1 310 0 676 351 37 16 chr3 132581786 132582162 -94942416 + L2 LINE L2 2270 2653 -661 255 221 114 53 chr3 132582214 132582345 -94942233 - L2 LINE L2 -93 3220 3082 219 346 49 0 chr3 132582387 132582468 -94942110 + L2 LINE L2 2997 3081 -232 366 23 0 0 chr3 132582627 132582670 -94941908 + (TG)n Simple_repeat Simple_repeat 2 44 0 28 61 0 0 chr3 132583715 132583764 -94940814 + AT_rich Low_complexity Low_complexity 1 49 0 312 308 80 40 chr3 132583846 132584070 -94940508 + L1ME4a LINE L1 5877 6109 -12 364 153 0 0 chr3 132585574 132585633 -94938945 + MER53 DNA DNA 2 60 -129 463 273 40 34 chr3 132586100 132586276 -94938302 - MER5B DNA MER1_type -1 177 1 233 338 13 19 chr3 132586657 132586811 -94937767 + GA-rich Low_complexity Low_complexity 4 156 0 7358 35 3 0 chr3 132587122 132588210 -94936368 - L1PA4 LINE L1 -3 6152 5063 2414 21 0 0 chr3 132588210 132588494 -94936084 + L1PA4 LINE L1 4790 5073 -1073 23 0 0 0 chr3 132589322 132589345 -94935233 + AT_rich Low_complexity Low_complexity 1 23 0 368 20 0 20 chr3 132589446 132589496 -94935082 + (CA)n Simple_repeat Simple_repeat 2 50 0 195 42 0 0 chr3 132590740 132590764 -94933814 + (CA)n Simple_repeat Simple_repeat 2 25 0 630 293 31 40 chr3 132594386 132594611 -94929967 - MIR SINE MIR -28 234 12 21 0 0 0 chr3 132596183 132596204 -94928374 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr3 132596298 132596323 -94928255 + AT_rich Low_complexity Low_complexity 1 25 0 331 264 0 85 chr3 132596443 132596549 -94928029 - MER5A DNA MER1_type -1 188 92 * 350 361 7 19 chr3 132596466 132596621 -94927957 + MER5A DNA MER1_type 36 188 -1 511 265 68 0 chr3 132598638 132598785 -94925793 + MIR SINE MIR 35 191 -71 27 0 0 0 chr3 132599377 132599404 -94925174 + AT_rich Low_complexity Low_complexity 1 27 0 398 265 128 36 chr3 132599978 132600174 -94924404 + L2 LINE L2 3028 3241 -72 24 0 0 0 chr3 132600535 132600559 -94924019 + AT_rich Low_complexity Low_complexity 1 24 0 200 338 0 52 chr3 132600701 132600778 -94923800 + MIR3 SINE MIR 99 171 -37 1736 125 27 8 chr3 132602750 132603037 -94921541 - AluSx SINE Alu 0 314 23 2863 3 0 0 chr3 132603252 132603564 -94921014 - AluYb8 SINE Alu -6 312 1 24 0 0 0 chr3 132603652 132603676 -94920902 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr3 132605553 132605577 -94919001 + AT_rich Low_complexity Low_complexity 1 24 0 316 346 111 6 chr3 132605690 132605852 -94918726 - MIR3 SINE MIR -10 198 20 378 359 58 18 chr3 132605857 132606080 -94918498 - MIR SINE MIR -3 259 28 3310 147 41 7 chr3 132607408 132607966 -94916612 + MER4D LTR ERV1 1 577 -326 2201 158 12 50 chr3 132607970 132608389 -94916189 + MER4E LTR ERV1 377 779 0 264 272 130 0 chr3 132608390 132608482 -94916096 + MIR SINE MIR 87 190 -72 276 77 0 0 chr3 132608698 132608737 -94915841 + (CA)n Simple_repeat Simple_repeat 2 40 0 582 323 93 23 chr3 132608745 132609083 -94915495 - L1ME LINE L1 -487 5675 5317 391 361 61 18 chr3 132609115 132609395 -94915183 + L1ME4a LINE L1 5600 5891 -230 282 283 57 38 chr3 132609526 132609632 -94914946 - MIR SINE MIR -142 120 13 428 376 47 42 chr3 132611144 132611530 -94913048 + L1MB2 LINE L1 5 392 -5499 1327 256 13 31 chr3 132611806 132612282 -94912296 + L1MB2 LINE L1 2170 2636 -3334 * 2808 121 17 20 chr3 132612270 132612767 -94911811 + L1MA1 LINE L1 5779 6285 -15 21 36 0 0 chr3 132612809 132612837 -94911741 + AT_rich Low_complexity Low_complexity 1 28 0 1937 246 70 16 chr3 132612837 132613266 -94911312 + L1MB2 LINE L1 2640 3123 -2847 2079 145 0 0 chr3 132613266 132613563 -94911015 - AluSx SINE Alu -15 297 1 1937 246 70 16 chr3 132613563 132613836 -94910742 + L1MB2 LINE L1 3123 3380 -2590 912 156 35 29 chr3 132613836 132614009 -94910569 - MSTC LTR MaLR -254 174 1 2212 199 98 85 chr3 132614009 132614747 -94909831 + L1MB2 LINE L1 4259 5005 -965 1460 217 13 43 chr3 132614738 132615135 -94909443 + L1MA9 LINE L1 5890 6274 -38 * 606 205 0 0 chr3 132615148 132615270 -94909308 + L1MB2 LINE L1 4981 5102 -868 3095 191 22 2 chr3 132615277 132615900 -94908678 + L1MB2 LINE L1 5358 5993 -2 516 345 72 4 chr3 132615919 132616154 -94908424 + MIR SINE MIR 7 257 -5 2023 123 7 3 chr3 132618341 132618649 -94905929 - AluSq SINE Alu 0 313 5 27 0 0 0 chr3 132619819 132619846 -94904732 + AT_rich Low_complexity Low_complexity 1 27 0 3916 203 54 56 chr3 132620131 132620676 -94903902 - L1MC3 LINE L1 -745 5401 4856 273 29 0 0 chr3 132620676 132620710 -94903868 + (TG)n Simple_repeat Simple_repeat 1 34 0 180 0 0 0 chr3 132620709 132620729 -94903849 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 3916 203 54 56 chr3 132620710 132621570 -94903008 - L1MC3 LINE L1 -1289 4857 4990 1085 229 44 4 chr3 132621563 132621834 -94902744 - L1MC3 LINE L1 -2074 4072 3791 * 1366 242 67 36 chr3 132621841 132622287 -94902291 + MLT1C LTR MaLR 8 467 0 1995 251 8 4 chr3 132622291 132622813 -94901765 - L1MC3 LINE L1 -2355 3791 3268 355 56 70 0 chr3 132622813 132622884 -94901694 + (TA)n Simple_repeat Simple_repeat 1 76 0 307 151 105 47 chr3 132622885 132622971 -94901607 + L1MC4 LINE L1 6614 6704 -1338 493 151 66 0 chr3 132622971 132623137 -94901441 + (TA)n Simple_repeat Simple_repeat 2 178 0 426 175 44 0 chr3 132623137 132623251 -94901327 - L1MC3 LINE L1 -2887 3259 3141 1692 179 0 19 chr3 132623953 132624305 -94900273 - AluJo SINE Alu 0 346 1 758 199 23 23 chr3 132624806 132624982 -94899596 - MER3 DNA MER1_type 0 209 34 210 378 20 50 chr3 132624994 132625195 -94899383 - L3 LINE CR1 -61 1516 1322 198 241 148 0 chr3 132625600 132625654 -94898924 - MIR SINE MIR -194 68 7 273 201 114 60 chr3 132625806 132625955 -94898623 - MER112 DNA MER1_type -98 162 6 318 282 105 38 chr3 132626523 132626661 -94897917 - MIR SINE MIR -36 172 22 502 88 0 38 chr3 132627554 132627634 -94896944 - MADE1 DNA Mariner -3 77 1 1997 115 14 4 chr3 132628784 132629063 -94895515 + AluSc SINE Alu 13 294 -15 296 140 0 18 chr3 132629069 132629126 -94895452 + (GGAA)n Simple_repeat Simple_repeat 1 56 0 189 74 0 0 chr3 132629139 132629166 -94895412 + (TG)n Simple_repeat Simple_repeat 2 28 0 259 289 41 0 chr3 132629182 132629279 -94895299 + MER103 DNA DNA 64 164 -2 2528 59 3 0 chr3 132630209 132630516 -94894062 + AluY SINE Alu 1 308 -3 451 264 11 0 chr3 132631898 132632076 -94892502 + GA-rich Low_complexity Low_complexity 1 180 0 222 37 0 0 chr3 132632084 132632111 -94892467 + (GA)n Simple_repeat Simple_repeat 1 27 0 358 320 130 5 chr3 132632580 132632780 -94891798 - MIR SINE MIR -18 244 20 22 35 0 0 chr3 132632992 132633021 -94891557 + AT_rich Low_complexity Low_complexity 1 29 0 265 281 7 52 chr3 132633175 132633328 -94891250 - L1ME4a LINE L1 -216 5905 5760 669 179 0 0 chr3 132633365 132633471 -94891107 + FRAM SINE Alu 13 118 -58 397 282 41 50 chr3 132633517 132633737 -94890841 - L1ME4a LINE L1 -363 5758 5541 272 153 254 0 chr3 132635101 132635160 -94889418 + MIR SINE MIR 118 191 -71 962 48 0 28 chr3 132635392 132635537 -94889041 + (GAA)n Simple_repeat Simple_repeat 2 142 0 220 289 92 13 chr3 132635820 132635896 -94888682 + L2 LINE L2 3156 3237 -35 203 296 0 84 chr3 132637518 132637589 -94886989 - L2 LINE L2 -83 3189 3125 203 254 0 17 chr3 132637655 132637714 -94886864 + (TG)n Simple_repeat Simple_repeat 2 59 0 2224 114 3 0 chr3 132638261 132638560 -94886018 + AluSq SINE Alu 1 300 -13 21 36 0 0 chr3 132640179 132640207 -94884371 + AT_rich Low_complexity Low_complexity 1 28 0 40 21 0 0 chr3 132641304 132641351 -94883227 + AT_rich Low_complexity Low_complexity 1 47 0 532 301 56 20 chr3 132641811 132642007 -94882571 + MIR SINE MIR 6 208 -54 514 289 149 49 chr3 132642224 132642574 -94882004 - L2 LINE L2 -3 3310 2926 236 167 0 0 chr3 132642835 132642877 -94881701 - U5 snRNA snRNA -74 42 1 216 0 0 0 chr3 132644954 132644978 -94879600 + (T)n Simple_repeat Simple_repeat 1 24 0 198 178 55 14 chr3 132645005 132645074 -94879504 - MIR SINE MIR -27 181 104 192 125 0 0 chr3 132645982 132646014 -94878564 + (T)n Simple_repeat Simple_repeat 1 32 0 990 293 109 8 chr3 132646669 132647274 -94877304 - L2 LINE L2 -41 3272 2593 327 141 0 0 chr3 132651037 132651101 -94873477 + (GA)n Simple_repeat Simple_repeat 1 64 0 300 53 0 0 chr3 132651317 132651355 -94873223 + (TG)n Simple_repeat Simple_repeat 1 38 0 1780 153 4 4 chr3 132652004 132652272 -94872306 + AluSx SINE Alu 37 304 -8 22 0 0 0 chr3 132652546 132652568 -94872010 + AT_rich Low_complexity Low_complexity 1 22 0 1708 148 89 82 chr3 132653209 132653634 -94870944 + MSTA LTR MaLR 1 428 0 1406 151 14 0 chr3 132653744 132653962 -94870616 - AluSg/x SINE Alu -16 296 76 233 295 117 23 chr3 132655345 132655486 -94869092 + MIR SINE MIR 44 190 -55 315 320 25 33 chr3 132657710 132657832 -94866746 + L2 LINE L2 3172 3292 -21 217 297 77 77 chr3 132660080 132660262 -94864316 + MIR SINE MIR 25 206 -56 408 226 43 35 chr3 132661185 132661300 -94863278 - MIR SINE MIR -145 117 2 753 234 0 0 chr3 132662202 132662347 -94862231 + FRAM SINE Alu 1 145 -31 203 195 24 0 chr3 132662935 132662976 -94861602 + MER91B DNA MER1_type 22 63 -127 24 0 0 0 chr3 132664728 132664752 -94859826 + AT_rich Low_complexity Low_complexity 1 24 0 549 306 124 8 chr3 132665097 132665398 -94859180 - L2 LINE L2 -194 3078 2732 195 69 0 0 chr3 132666010 132666039 -94858539 + (TAAAAA)n Simple_repeat Simple_repeat 2 30 0 695 167 9 0 chr3 132666043 132666190 -94858388 + FLAM_C SINE Alu 2 149 0 466 357 22 6 chr3 132666191 132666373 -94858205 - L2 LINE L2 -789 2525 2341 249 83 0 0 chr3 132667030 132667066 -94857512 + (TG)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr3 132667593 132667614 -94856964 + AT_rich Low_complexity Low_complexity 1 21 0 1279 126 10 15 chr3 132668058 132668256 -94856322 + AluSq SINE Alu 103 299 -14 1910 114 0 0 chr3 132669353 132669634 -94854944 + L1PA13 LINE L1 5883 6163 0 24 32 0 0 chr3 132669717 132669748 -94854830 + AT_rich Low_complexity Low_complexity 1 31 0 226 345 7 21 chr3 132669923 132670065 -94854513 + CT-rich Low_complexity Low_complexity 1 140 0 24 32 0 0 chr3 132671064 132671095 -94853483 + AT_rich Low_complexity Low_complexity 1 31 0 254 349 68 34 chr3 132671356 132671502 -94853076 - MIR SINE MIR -84 178 28 249 180 0 0 chr3 132673376 132673426 -94851152 + A-rich Low_complexity Low_complexity 4 53 0 7933 167 21 25 chr3 132677308 132677791 -94846787 - L1MA5 LINE L1 -8 6292 5808 2247 87 0 3 chr3 132677791 132678079 -94846499 - AluSc SINE Alu -17 292 6 7933 167 21 25 chr3 132678079 132680154 -94844424 - L1MA5 LINE L1 -492 5808 3753 4016 136 65 48 chr3 132680154 132680926 -94843652 - LTR1 LTR ERV1 0 785 1 7933 167 21 25 chr3 132680926 132681140 -94843438 - L1MA5 LINE L1 -2547 3753 3540 249 318 90 16 chr3 132682557 132682802 -94841776 - L2 LINE L2 -1488 1826 1564 276 247 41 0 chr3 132683963 132684036 -94840542 + MER116 DNA Mariner 1 76 -4 274 242 11 21 chr3 132685243 132685338 -94839240 + (TA)n Simple_repeat Simple_repeat 2 95 0 23 0 0 0 chr3 132686088 132686111 -94838467 + AT_rich Low_complexity Low_complexity 1 23 0 2312 111 0 3 chr3 132687476 132687783 -94836795 - AluSx SINE Alu -6 306 1 254 331 105 23 chr3 132688707 132688840 -94835738 - MIR SINE MIR -111 151 8 2355 115 0 0 chr3 132689293 132689605 -94834973 - AluSx SINE Alu 0 312 1 1627 190 51 0 chr3 132690834 132691166 -94833412 + L1PB4 LINE L1 5807 6155 -1 2136 130 0 9 chr3 132691966 132692281 -94832297 + AluSx SINE Alu 1 312 0 1903 130 36 0 chr3 132693413 132693689 -94830889 + AluSx SINE Alu 1 286 -26 202 340 11 32 chr3 132694971 132695065 -94829513 - MIR SINE MIR -74 188 97 256 340 153 23 chr3 132695119 132695334 -94829244 - MIR SINE MIR -16 246 4 1528 200 32 20 chr3 132695574 132695974 -94828604 + LTR52 LTR ERVL 3 407 -14 224 244 0 0 chr3 132696023 132696068 -94828510 - MIR SINE MIR -108 154 110 429 70 0 0 chr3 132696080 132696137 -94828441 + (TG)n Simple_repeat Simple_repeat 1 57 0 357 356 31 25 chr3 132697904 132698067 -94826511 + MIR SINE MIR 34 197 -65 2332 81 3 10 chr3 132698279 132698575 -94826003 + AluSp SINE Alu 1 294 -19 24273 137 17 22 chr3 132699401 132699427 -94825151 - L1PA8A LINE L1 0 6446 6421 189 0 0 0 chr3 132699427 132699448 -94825130 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 24273 137 17 22 chr3 132699448 132705820 -94818758 - L1PA8A LINE L1 -25 6421 1 451 327 55 6 chr3 132707063 132707228 -94817350 + MIR SINE MIR 6 178 -84 31 0 0 0 chr3 132708671 132708702 -94815876 + AT_rich Low_complexity Low_complexity 1 31 0 638 336 20 4 chr3 132709339 132709583 -94814995 + MIR SINE MIR 15 262 0 380 248 117 14 chr3 132711467 132711612 -94812966 + MIR SINE MIR 42 201 -61 198 327 28 47 chr3 132711788 132711895 -94812683 - L2 LINE L2 -13 3259 3155 2116 108 44 3 chr3 132712965 132713262 -94811316 - AluSp SINE Alu -4 309 1 183 156 0 0 chr3 132713740 132713772 -94810806 + T-rich Low_complexity Low_complexity 1 32 0 434 278 6 44 chr3 132714707 132714887 -94809691 + G-rich Low_complexity Low_complexity 3 175 0 210 71 0 0 chr3 132715159 132715187 -94809391 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 181 217 130 43 chr3 132715492 132715561 -94809017 + L2 LINE L2 679 753 -2561 273 282 0 26 chr3 132716230 132716308 -94808270 + L2 LINE L2 3230 3305 -8 242 352 86 0 chr3 132716871 132716976 -94807602 + MIR SINE MIR 79 192 -70 1829 152 17 14 chr3 132717442 132717732 -94806846 + AluJb SINE Alu 1 291 -21 241 330 99 33 chr3 132718461 132718552 -94806026 - L2 LINE L2 -29 3243 3147 268 367 97 18 chr3 132718567 132719022 -94805556 - L2 LINE L2 -1090 2224 1734 293 324 108 11 chr3 132719655 132719833 -94804745 - MIR SINE MIR -2 260 65 614 333 83 0 chr3 132719833 132720073 -94804505 + MIR SINE MIR 1 260 -2 236 337 65 11 chr3 132721614 132721706 -94802872 - L2 LINE L2 -31 3241 3145 212 315 0 0 chr3 132721730 132721784 -94802794 - L2 LINE L2 -17 3255 3202 188 353 8 34 chr3 132721916 132722035 -94802543 - L2 LINE L2 -327 2945 2830 2212 118 0 10 chr3 132722195 132722508 -94802070 + AluSq SINE Alu 2 311 -2 23 33 0 0 chr3 132724386 132724416 -94800162 + AT_rich Low_complexity Low_complexity 1 30 0 639 240 24 43 chr3 132726472 132726680 -94797898 - MLT1K LTR MaLR -1 587 384 213 176 39 0 chr3 132727005 132727031 -94797547 + (TA)n Simple_repeat Simple_repeat 2 26 -28 180 0 0 0 chr3 132727031 132727051 -94797527 + (TG)n Simple_repeat Simple_repeat 2 21 0 213 176 39 0 chr3 132727051 132727075 -94797503 + (TA)n Simple_repeat Simple_repeat 26 54 0 25 0 0 0 chr3 132727669 132727694 -94796884 + AT_rich Low_complexity Low_complexity 1 25 0 7924 30 1 1 chr3 132727867 132728828 -94795750 - L1PA3 LINE L1 -1015 5131 4171 7770 19 1 0 chr3 132728828 132729876 -94794702 + L1PA3 LINE L1 5107 6155 0 3389 246 63 82 chr3 132730992 132732783 -94791795 + L1MCb LINE L1 3 1826 -4738 1242 181 141 25 chr3 132732783 132733059 -94791519 - AluJo SINE Alu -4 308 1 3389 246 63 82 chr3 132733059 132733650 -94790928 + L1MCb LINE L1 1826 2483 -4081 1438 199 25 4 chr3 132733650 132733771 -94790807 + AluJo SINE Alu 1 118 -194 215 79 26 0 chr3 132733771 132733809 -94790769 + (TAA)n Simple_repeat Simple_repeat 2 40 0 1438 199 25 4 chr3 132733809 132733963 -94790615 + AluJo SINE Alu 118 282 -30 3389 246 63 82 chr3 132733963 132734419 -94790159 + L1MCb LINE L1 2483 2946 -3618 2304 71 29 3 chr3 132786283 132786591 -94737987 - L1PA8 LINE L1 -4 6168 5853 733 221 99 0 chr3 132787387 132787559 -94737019 + MER5A DNA MER1_type 1 189 0 2096 106 0 7 chr3 132788475 132788776 -94735802 + AluY SINE Alu 1 299 -12 284 266 52 97 chr3 132789017 132789171 -94735407 - MIR SINE MIR -85 177 31 620 173 19 0 chr3 132790152 132790256 -94734322 - MER5A DNA MER1_type -75 114 9 900 248 83 14 chr3 132790969 132791388 -94733190 + MER113 DNA MER1_type? 37 484 -37 558 188 26 0 chr3 132792832 132792949 -94731629 + MER3 DNA MER1_type 9 128 -81 831 159 0 8 chr3 132792953 132793079 -94731499 - FLAM_C SINE Alu -18 125 1 296 133 107 13 chr3 132793081 132793156 -94731422 + MER3 DNA MER1_type 120 201 -8 461 277 151 13 chr3 132793189 132793348 -94731230 + MER5A DNA MER1_type 9 189 0 650 226 51 23 chr3 132795498 132795571 -94729007 + MIR SINE MIR 81 150 -112 2037 125 67 25 chr3 132795571 132795930 -94728648 - THE1C LTR MaLR -1 374 1 650 226 51 23 chr3 132795930 132796033 -94728545 + MIR SINE MIR 150 262 0 1429 169 8 38 chr3 132796092 132796359 -94728219 - AluJo SINE Alu -53 259 1 30 0 0 0 chr3 132796374 132796404 -94728174 + AT_rich Low_complexity Low_complexity 1 30 0 1654 153 7 4 chr3 132796410 132796691 -94727887 - L1PA16 LINE L1 0 6166 5885 330 153 0 0 chr3 132797258 132797317 -94727261 + (CA)n Simple_repeat Simple_repeat 2 60 0 25 65 0 0 chr3 132798016 132798062 -94726516 + AT_rich Low_complexity Low_complexity 1 46 0 353 266 28 46 chr3 132798142 132798251 -94726327 - MIR SINE MIR -48 214 108 219 388 41 25 chr3 132798310 132798431 -94726147 - MER5A DNA MER1_type 0 189 67 628 183 0 40 chr3 132799981 132800107 -94724471 - FLAM_A SINE Alu -10 132 12 247 321 119 0 chr3 132800640 132800749 -94723829 + L1ME3A LINE L1 6012 6133 -37 402 100 0 0 chr3 132800837 132800897 -94723681 + (TG)n Simple_repeat Simple_repeat 2 61 0 244 265 15 0 chr3 132801094 132801162 -94723416 + MER69 DNA AcHobo 17 85 -1141 2553 53 0 0 chr3 132801204 132801504 -94723074 - AluY SINE Alu -11 300 1 33 0 0 0 chr3 132801514 132801547 -94723031 + AT_rich Low_complexity Low_complexity 1 33 0 226 353 139 25 chr3 132801624 132801746 -94722832 - MIR SINE MIR -115 147 12 2247 124 19 5 chr3 132801759 132802129 -94722449 + MER4D LTR ERV1 1 375 -497 2723 134 43 32 chr3 132802281 132802787 -94721791 + MER4D LTR ERV1 392 903 0 7753 21 0 1 chr3 132804633 132805593 -94718985 + L1PA3 LINE L1 5197 6155 0 329 67 0 0 chr3 132806027 132806072 -94718506 + MSTA LTR MaLR 1 45 -383 859 340 173 20 chr3 132806223 132807164 -94717414 - L2 LINE L2 -2139 1175 91 869 222 0 15 chr3 132807586 132807784 -94716794 - L1PA16 LINE L1 0 6166 5972 913 153 6 12 chr3 132807791 132807961 -94716617 + L1PA16 LINE L1 5782 5950 -215 785 342 4 4 chr3 132808010 132808250 -94716328 - MIR SINE MIR -4 258 19 296 223 34 17 chr3 132810764 132810879 -94713699 + HERVFH21 LTR ERV1 6021 7071 -321 2424 81 13 0 chr3 132810879 132811188 -94713390 - AluSp SINE Alu 0 313 1 2348 46 3 20 chr3 132811369 132811673 -94712905 - AluY SINE Alu -12 299 1 1113 154 82 5 chr3 132811676 132811871 -94712707 - AluJb SINE Alu -19 293 84 2206 91 3 10 chr3 132812061 132812225 -94712353 - AluSg SINE Alu -15 295 132 2389 92 3 6 chr3 132812225 132812539 -94712039 - AluSq SINE Alu 0 313 1 2206 91 3 10 chr3 132812539 132812671 -94711907 - AluSg SINE Alu -178 132 1 549 200 40 0 chr3 132812683 132812808 -94711770 - FLAM_A SINE Alu -3 130 1 574 306 66 18 chr3 132813163 132813496 -94711082 + L1ME4a LINE L1 4300 4648 -1498 245 346 67 17 chr3 132813605 132813784 -94710794 + MIR SINE MIR 74 261 -1 2186 99 7 10 chr3 132814028 132814331 -94710247 - AluSg SINE Alu 0 310 9 1674 141 118 20 chr3 132814339 132814687 -94709891 - L1PA16 LINE L1 -11 6155 5774 1423 268 36 12 chr3 132816253 132816674 -94707904 - MER70A LTR ERVL -41 431 1 2525 99 11 166 chr3 132817189 132817757 -94706821 + LTR12 LTR ERV1 1 480 -234 2193 86 23 10 chr3 132818807 132819108 -94705470 - AluSx SINE Alu -7 305 1 29 60 0 0 chr3 132821016 132821066 -94703512 + AT_rich Low_complexity Low_complexity 1 50 0 27 29 0 0 chr3 132821287 132821321 -94703257 + AT_rich Low_complexity Low_complexity 1 34 0 371 320 169 26 chr3 132822020 132822370 -94702208 + L3 LINE CR1 406 805 -772 533 295 200 36 chr3 132822430 132822931 -94701647 + L1ME4a LINE L1 5533 6115 -6 210 191 48 48 chr3 132823014 132823077 -94701501 + L3 LINE CR1 947 1009 -568 225 315 19 80 chr3 132823208 132823421 -94701157 + L3 LINE CR1 1162 1361 -216 301 361 58 46 chr3 132823657 132824050 -94700528 - MLT1K LTR MaLR -188 400 3 238 359 0 0 chr3 132824052 132824116 -94700462 + L3b LINE CR1 1512 1575 -8 308 290 91 57 chr3 132825703 132825879 -94698699 + MER5A DNA MER1_type 2 183 -6 259 242 46 18 chr3 132825941 132826029 -94698549 + MIR SINE MIR 36 125 -83 1845 139 18 66 chr3 132827540 132827920 -94696658 + MLT1A1 LTR MaLR 1 362 -3 227 54 27 0 chr3 132829280 132829317 -94695261 + (TC)n Simple_repeat Simple_repeat 2 39 0 533 243 113 67 chr3 132829512 132829751 -94694827 + MIR SINE MIR 3 252 -10 289 211 98 41 chr3 132829766 132829889 -94694689 - L1MC/D LINE L1 -1985 5823 5694 23 0 0 0 chr3 132830852 132830875 -94693703 + AT_rich Low_complexity Low_complexity 1 23 0 2224 124 0 0 chr3 132831390 132831697 -94692881 - AluSg SINE Alu 0 310 4 195 129 0 0 chr3 132831700 132831731 -94692847 + (T)n Simple_repeat Simple_repeat 1 31 0 25 0 0 0 chr3 132832357 132832382 -94692196 + AT_rich Low_complexity Low_complexity 1 25 0 182 353 71 0 chr3 132832629 132832714 -94691864 - MER5A DNA MER1_type -92 97 7 232 47 23 23 chr3 132832982 132833025 -94691553 + (TTTTA)n Simple_repeat Simple_repeat 2 44 0 2163 111 0 0 chr3 132833029 132833309 -94691269 - AluSx SINE Alu -32 280 1 359 271 56 0 chr3 132833331 132833438 -94691140 + MIR SINE MIR 125 237 -25 271 92 31 31 chr3 132833558 132833623 -94690955 + (CAGAGA)n Simple_repeat Simple_repeat 2 66 0 7300 181 109 77 chr3 132834535 132835944 -94688634 + L1MC3 LINE L1 5596 6958 -827 228 86 0 0 chr3 132835944 132835979 -94688599 + (TAAA)n Simple_repeat Simple_repeat 4 38 0 7300 181 109 77 chr3 132835979 132836021 -94688557 + L1MC3 LINE L1 6958 6997 -788 232 255 19 57 chr3 132836021 132836127 -94688451 + MLT1F1 LTR MaLR 24 125 -442 7300 181 109 77 chr3 132836127 132836691 -94687887 + L1MC3 LINE L1 6997 7785 0 1299 203 139 77 chr3 132839031 132839485 -94685093 + MLT1D LTR MaLR 24 505 0 743 135 0 16 chr3 132839659 132839785 -94684793 + Charlie5 DNA MER1_type 1 124 -2488 * 1776 173 28 8 chr3 132839775 132840162 -94684416 + Charlie5 DNA MER1_type 2230 2624 0 517 66 13 0 chr3 132840435 132840511 -94684067 - L1PA11 LINE L1 0 6174 6098 221 300 0 29 chr3 132841233 132841303 -94683275 - MIR3 SINE MIR -131 77 10 1608 97 0 0 chr3 132841841 132842067 -94682511 - L1PA13 LINE L1 -4 6159 5934 1681 193 0 16 chr3 132842693 132842998 -94681580 + AluJo SINE Alu 13 312 0 24 0 0 0 chr3 132843317 132843341 -94681237 + AT_rich Low_complexity Low_complexity 1 24 0 2113 123 3 10 chr3 132844642 132844951 -94679627 - AluSx SINE Alu -5 307 1 344 341 52 39 chr3 132845197 132845505 -94679073 - L2 LINE L2 -1686 1628 1317 303 259 47 0 chr3 132846300 132846385 -94678193 + L2 LINE L2 3225 3313 0 25 65 0 0 chr3 132846998 132847044 -94677534 + AT_rich Low_complexity Low_complexity 1 46 0 26 50 0 0 chr3 132847220 132847260 -94677318 + AT_rich Low_complexity Low_complexity 1 40 0 397 306 48 113 chr3 132847674 132848046 -94676532 + L2 LINE L2 2925 3272 0 253 274 230 0 chr3 132848267 132848402 -94676176 + L1MC/D LINE L1 5667 5832 -1976 318 268 64 70 chr3 132849249 132849406 -94675172 + L2 LINE L2 3158 3313 0 742 321 18 0 chr3 132849827 132850051 -94674527 + MIR SINE MIR 23 250 -12 27 81 0 0 chr3 132850392 132850454 -94674124 + AT_rich Low_complexity Low_complexity 1 62 0 282 282 12 12 chr3 132850471 132850556 -94674022 + MIR3 SINE MIR 76 160 -48 322 290 103 0 chr3 132850626 132850771 -94673807 - MER103 DNA DNA -3 163 4 963 199 60 38 chr3 132850842 132851068 -94673510 + MER5C DNA MER1_type 2 236 -88 2283 97 0 3 chr3 132851068 132851376 -94673202 - AluY SINE Alu -4 307 1 963 199 60 38 chr3 132851376 132851416 -94673162 + MER5C DNA MER1_type 236 274 -50 269 79 0 0 chr3 132851422 132851460 -94673118 + L1ME LINE L1 5693 5730 -432 224 156 22 0 chr3 132851463 132851508 -94673070 + MER5C DNA MER1_type 277 322 -2 232 300 154 18 chr3 132851573 132851683 -94672895 + MER5A DNA MER1_type 63 187 -2 200 309 36 0 chr3 132852402 132852457 -94672121 - MER5B DNA MER1_type 0 178 122 724 149 0 0 chr3 132852458 132852565 -94672013 + U6 snRNA snRNA 1 107 0 4012 101 37 2 chr3 132852565 132853137 -94671441 + L1PA11 LINE L1 5513 6104 -70 336 284 32 21 chr3 132853137 132853232 -94671346 - MER5B DNA MER1_type -79 99 4 203 242 0 16 chr3 132853532 132853594 -94670984 + GA-rich Low_complexity Low_complexity 2 62 0 201 250 0 0 chr3 132853754 132853794 -94670784 + polypurine Low_complexity Low_complexity 1 40 0 222 159 23 0 chr3 132854723 132854767 -94669811 - L2 LINE L2 -4 3309 3265 185 286 18 0 chr3 132855013 132855069 -94669509 - L2 LINE L2 -1148 2166 2110 988 304 87 10 chr3 132855550 132855942 -94668636 + LTR16B LTR ERVL 43 464 0 23 0 0 0 chr3 132857271 132857294 -94667284 + AT_rich Low_complexity Low_complexity 1 23 0 189 320 39 0 chr3 132857922 132858000 -94666578 + MIR SINE MIR 105 185 -77 293 232 62 18 chr3 132858930 132859042 -94665536 - LTR67 LTR ERVL -67 490 374 464 346 51 0 chr3 132859420 132859576 -94665002 - MIR3 SINE MIR -18 190 27 2214 49 4 0 chr3 132859853 132860117 -94664461 - AluY SINE Alu -46 265 1 294 277 12 0 chr3 132860195 132860278 -94664300 + MIR SINE MIR 64 147 -61 184 314 81 12 chr3 132860306 132860392 -94664186 + L2 LINE L2 3221 3312 -1 201 39 0 0 chr3 132860475 132860501 -94664077 + (TC)n Simple_repeat Simple_repeat 2 27 0 208 329 0 14 chr3 132860512 132860585 -94663993 + CT-rich Low_complexity Low_complexity 1 72 0 433 298 80 7 chr3 132861401 132861552 -94663026 + MIR3 SINE MIR 21 182 -26 27 29 0 0 chr3 132862097 132862131 -94662447 + AT_rich Low_complexity Low_complexity 1 34 0 1382 174 107 7 chr3 132862477 132862758 -94661820 + MSTA LTR MaLR 120 428 0 199 325 188 0 chr3 132864445 132864562 -94660016 + MIR SINE MIR 57 195 -67 2500 56 3 0 chr3 132865096 132865398 -94659180 + AluY SINE Alu 2 304 -7 1800 155 14 7 chr3 132865447 132865744 -94658834 - AluSx SINE Alu -11 301 3 21 0 0 0 chr3 132866183 132866204 -94658374 + AT_rich Low_complexity Low_complexity 1 21 0 2582 100 0 65 chr3 132866366 132866690 -94657888 + THE1C LTR MaLR 1 296 -79 3149 32 3 0 chr3 132866690 132867066 -94657512 + L1PA4 LINE L1 5779 6155 0 2582 100 0 65 chr3 132867066 132867142 -94657436 + THE1C LTR MaLR 296 375 0 480 250 162 0 chr3 132867298 132867487 -94657091 + MIR SINE MIR 45 261 -1 261 284 18 46 chr3 132867501 132867610 -94656968 - MIR SINE MIR -155 107 2 21 0 0 0 chr3 132867657 132867678 -94656900 + AT_rich Low_complexity Low_complexity 1 21 0 629 303 106 47 chr3 132868394 132868583 -94655995 - L2 LINE L2 -8 3305 3129 2096 91 60 0 chr3 132868583 132868868 -94655710 + AluY SINE Alu 1 302 -9 629 303 106 47 chr3 132868868 132869197 -94655381 - L2 LINE L2 -184 3129 2761 545 217 54 0 chr3 132869237 132869366 -94655212 + MER58B DNA MER1_type 34 169 -172 638 184 52 0 chr3 132869498 132869634 -94654944 + MER58B DNA MER1_type 199 341 0 621 292 27 23 chr3 132869634 132869853 -94654725 - L2 LINE L2 -641 2673 2454 5030 71 16 47 chr3 132870627 132871373 -94653205 + L1PA8 LINE L1 5446 6168 -4 750 204 68 6 chr3 132871390 132871552 -94653026 + FRAM SINE Alu 1 172 -4 255 234 0 0 chr3 132872064 132872111 -94652467 - MIR3 SINE MIR -3 205 159 249 289 63 63 chr3 132872295 132872454 -94652124 + MIR SINE MIR 66 224 -38 1420 164 27 81 chr3 132874391 132874689 -94649889 + AluJo SINE Alu 1 311 0 222 0 35 0 chr3 132874689 132874718 -94649860 + (TAAA)n Simple_repeat Simple_repeat 3 180 0 1104 176 15 15 chr3 132876099 132876336 -94648242 + AluJo SINE Alu 85 321 0 1866 131 30 0 chr3 132876340 132876607 -94647971 + AluSx SINE Alu 1 275 -37 188 0 0 69 chr3 132876613 132876642 -94647936 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 1997 114 15 0 chr3 132877449 132877721 -94646857 - AluSx SINE Alu -16 296 21 300 313 80 18 chr3 132878747 132878971 -94645607 + L1ME LINE L1 2 239 -5831 3857 193 64 47 chr3 132879437 132880230 -94644348 + MER106B DNA MER1_type 1 780 -279 991 105 0 7 chr3 132880230 132880373 -94644205 - L1PA8 LINE L1 -11 6161 6020 1664 190 0 7 chr3 132880378 132880704 -94643874 - AluJb SINE Alu 0 324 1 3857 193 64 47 chr3 132880704 132880941 -94643637 + MER106B DNA MER1_type 783 1055 -4 273 254 134 64 chr3 132881000 132881553 -94643025 + L1ME LINE L1 582 1184 -4896 2993 140 40 7 chr3 132881585 132882142 -94642436 - L1MA4A LINE L1 -6 6297 5723 2158 147 19 16 chr3 132882586 132882960 -94641618 + THE1C LTR MaLR 1 375 0 363 44 0 0 chr3 132883350 132883395 -94641183 + (CA)n Simple_repeat Simple_repeat 1 45 0 307 297 124 7 chr3 132884782 132884927 -94639651 - L2 LINE L2 0 3313 3152 183 156 0 0 chr3 132885406 132885438 -94639140 + A-rich Low_complexity Low_complexity 1 32 0 2262 108 0 3 chr3 132886259 132886565 -94638013 - AluSc SINE Alu -4 305 1 285 405 9 0 chr3 132887739 132887850 -94636728 - L2 LINE L2 -27 3245 3134 22 21 0 62 chr3 132888021 132888069 -94636509 + AT_rich Low_complexity Low_complexity 1 45 0 298 286 91 33 chr3 132888081 132888322 -94636256 + L1ME LINE L1 5522 5776 -345 181 245 38 57 chr3 132888339 132888392 -94636186 + MIR SINE MIR 19 70 -192 362 263 59 99 chr3 132888981 132889133 -94635445 - MER5B DNA MER1_type -16 162 17 341 333 17 8 chr3 132889838 132889958 -94634620 - L2 LINE L2 -2 3311 3191 30 27 0 0 chr3 132890207 132890244 -94634334 + AT_rich Low_complexity Low_complexity 1 37 0 701 284 45 18 chr3 132890542 132890873 -94633705 + L1ME4a LINE L1 5542 5881 -240 237 340 120 20 chr3 132891466 132891616 -94632962 - MIR SINE MIR -92 170 6 286 336 10 19 chr3 132892077 132892181 -94632397 - MER5A DNA MER1_type -80 109 7 1998 116 35 32 chr3 132892192 132892503 -94632075 + AluSx SINE Alu 1 312 0 202 233 0 0 chr3 132892568 132892611 -94631967 - L2 LINE L2 -5 3308 3266 286 336 10 19 chr3 132893181 132893285 -94631293 - MER5A DNA MER1_type -80 109 7 1901 138 38 7 chr3 132893296 132893587 -94630991 + AluSx SINE Alu 1 300 -12 1155 196 66 10 chr3 132894830 132895131 -94629447 + MER33 DNA MER1_type 5 322 -2 372 316 53 18 chr3 132895606 132895777 -94628801 + MER5A DNA MER1_type 10 186 -3 26 0 0 0 chr3 132896005 132896031 -94628547 + AT_rich Low_complexity Low_complexity 1 26 0 263 287 11 11 chr3 132896450 132896537 -94628041 + MIR3 SINE MIR 115 201 -7 805 246 15 15 chr3 132897618 132897817 -94626761 - MIR SINE MIR -1 261 63 426 229 172 26 chr3 132897886 132898078 -94626500 + MIR SINE MIR 25 244 -18 222 208 0 21 chr3 132900157 132900205 -94624373 + CT-rich Low_complexity Low_complexity 4 50 0 1587 206 31 36 chr3 132900530 132900914 -94623664 + MLT1B LTR MaLR 1 382 -8 6895 134 9 17 chr3 132901209 132902789 -94621789 - L1MA3 LINE L1 0 6305 4743 248 303 73 42 chr3 132903290 132903455 -94621123 + L2 LINE L2 2881 3050 -222 211 255 0 0 chr3 132903758 132903809 -94620769 - MIR SINE MIR -62 200 150 312 27 0 0 chr3 132905179 132905216 -94619362 + (TG)n Simple_repeat Simple_repeat 1 37 0 1678 166 86 3 chr3 132906299 132906612 -94617966 - MER44D DNA MER2_type 0 609 1 279 368 111 10 chr3 132907657 132907858 -94616720 - MIR SINE MIR -31 231 13 288 0 0 0 chr3 132907965 132907997 -94616581 + (CA)n Simple_repeat Simple_repeat 1 32 0 550 269 131 0 chr3 132908271 132908431 -94616147 + MIR SINE MIR 49 229 -33 195 215 92 31 chr3 132909031 132909096 -94615482 - L3 LINE CR1 -202 1375 1307 392 317 90 0 chr3 132909308 132909453 -94615125 + LTR16A LTR ERVL 284 441 -9 249 196 0 0 chr3 132909528 132909584 -94614994 + (TTCA)n Simple_repeat Simple_repeat 1 56 0 312 102 0 0 chr3 132909758 132909807 -94614771 + (GA)n Simple_repeat Simple_repeat 2 50 0 1945 161 21 0 chr3 132909873 132910202 -94614376 + THE1B LTR MaLR 1 336 -28 372 58 58 0 chr3 132910354 132910406 -94614172 + MER4D LTR ERV1 317 371 -532 2926 128 43 32 chr3 132910561 132911067 -94613511 + MER4D LTR ERV1 392 903 0 428 322 106 68 chr3 132912040 132912847 -94611731 - L2 LINE L2 -1 3312 2451 25 31 0 0 chr3 132915118 132915150 -94609428 + AT_rich Low_complexity Low_complexity 1 32 0 25 31 0 0 chr3 132915445 132915477 -94609101 + AT_rich Low_complexity Low_complexity 1 32 0 1931 193 86 34 chr3 132916178 132916808 -94607770 - MER39 LTR ERV1 0 707 4 2181 109 38 44 chr3 132917825 132918191 -94606387 + THE1B LTR MaLR 1 364 0 357 281 82 34 chr3 132918903 132919049 -94605529 + MIR SINE MIR 39 191 -71 584 324 52 28 chr3 132919604 132919931 -94604647 + L3b LINE CR1 1102 1436 -147 191 285 267 12 chr3 132920478 132920643 -94603935 + MIR SINE MIR 42 248 -14 24 0 0 0 chr3 132920968 132920992 -94603586 + AT_rich Low_complexity Low_complexity 1 24 0 328 346 103 39 chr3 132921482 132921954 -94602624 + L2 LINE L2 2600 3122 -191 2588 37 0 0 chr3 132921954 132922253 -94602325 + AluY SINE Alu 1 299 -12 328 346 103 39 chr3 132922253 132922459 -94602119 + L2 LINE L2 3122 3313 0 226 250 28 28 chr3 132923970 132924042 -94600536 - MIR SINE MIR -111 151 80 21 0 0 0 chr3 132924129 132924150 -94600428 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 132924204 132924225 -94600353 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr3 132924349 132924393 -94600185 + AT_rich Low_complexity Low_complexity 1 44 0 2103 113 29 42 chr3 132924762 132925141 -94599437 + THE1C LTR MaLR 1 374 -1 183 204 0 0 chr3 132925261 132925310 -94599268 + GA-rich Low_complexity Low_complexity 1 49 0 1615 189 0 17 chr3 132925520 132925811 -94598767 + AluJb SINE Alu 1 286 -26 1087 172 0 26 chr3 132925811 132925835 -94598743 + AluJo SINE Alu 1 310 0 2373 124 8 19 chr3 132926035 132926414 -94598164 - THE1C LTR MaLR 0 375 1 226 325 110 65 chr3 132926558 132926644 -94597934 + MIR3 SINE MIR 30 128 -80 2103 118 21 0 chr3 132926644 132926931 -94597647 + AluSg SINE Alu 1 293 -17 226 325 110 65 chr3 132926931 132926998 -94597580 + MIR3 SINE MIR 128 190 -18 866 242 100 43 chr3 132927189 132927610 -94596968 - MER113 DNA MER1_type? -34 487 43 232 182 61 0 chr3 132928242 132928308 -94596270 + L1MA8 LINE L1 6219 6288 -3 181 315 68 14 chr3 132928333 132928406 -94596172 - L2 LINE L2 -57 3256 3180 402 316 26 19 chr3 132928736 132928891 -94595687 - MIR SINE MIR -56 206 51 821 10 10 0 chr3 132929210 132929308 -94595270 + (TCTA)n Simple_repeat Simple_repeat 4 102 0 857 133 74 0 chr3 132929310 132929445 -94595133 - AluSg/x SINE Alu -31 281 137 2449 184 22 13 chr3 132929886 132930349 -94594229 - MLT1C LTR MaLR 0 467 1 217 305 0 0 chr3 132930444 132930503 -94594075 + (CG)n Simple_repeat Simple_repeat 1 59 0 1160 233 3 38 chr3 132930568 132930881 -94593697 - MLT2C1 LTR ERVL -95 302 1 2449 184 22 13 chr3 132932101 132932564 -94592014 - MLT1C LTR MaLR 0 467 1 351 0 0 0 chr3 132932651 132932690 -94591888 + (TG)n Simple_repeat Simple_repeat 1 39 0 1338 222 8 48 chr3 132932739 132933095 -94591483 - MLT2C1 LTR ERVL -55 342 1 236 327 146 9 chr3 132934193 132934303 -94590275 + MIR SINE MIR 20 144 -64 924 206 117 5 chr3 132934355 132934670 -94589908 - Tigger5 DNA MER2_type 0 2323 1 252 295 74 0 chr3 132934672 132934767 -94589811 - MIR SINE MIR -55 207 106 23 0 0 0 chr3 132935559 132935582 -94588996 + AT_rich Low_complexity Low_complexity 1 23 0 1258 140 0 0 chr3 132935809 132935987 -94588591 + AluSg/x SINE Alu 128 305 -7 229 268 54 0 chr3 132936001 132936057 -94588521 + MIR SINE MIR 122 180 -82 23 0 0 0 chr3 132936247 132936270 -94588308 + AT_rich Low_complexity Low_complexity 1 23 0 363 227 13 7 chr3 132936411 132936561 -94588017 + (CA)n Simple_repeat Simple_repeat 1 151 0 914 102 0 7 chr3 132936675 132936812 -94587766 - MER72 LTR ERV1 -2 720 585 1734 176 13 22 chr3 132936814 132937126 -94587452 - AluJb SINE Alu -3 309 1 239 53 0 0 chr3 132937456 132937524 -94587054 + L1PA2 LINE L1 6118 6185 0 21 36 0 0 chr3 132937726 132937754 -94586824 + AT_rich Low_complexity Low_complexity 1 28 0 285 172 0 0 chr3 132937861 132937925 -94586653 + (TA)n Simple_repeat Simple_repeat 1 64 0 2156 108 0 33 chr3 132938124 132938431 -94586147 + AluSx SINE Alu 1 297 -15 1032 180 63 48 chr3 132938502 132938818 -94585760 + MER33 DNA MER1_type 4 324 0 266 272 120 0 chr3 132939312 132939404 -94585174 + MIR SINE MIR 35 137 -71 24 0 0 0 chr3 132939810 132939834 -94584744 + AT_rich Low_complexity Low_complexity 1 24 0 233 188 62 0 chr3 132940949 132941029 -94583549 + (TA)n Simple_repeat Simple_repeat 1 85 0 509 328 50 80 chr3 132941700 132942063 -94582515 - L2 LINE L2 -5 3267 2916 571 326 111 44 chr3 132942237 132942937 -94581641 - L2 LINE L2 -575 2739 1993 354 313 38 23 chr3 132943014 132943145 -94581433 + MIR SINE MIR 20 152 -56 327 192 0 0 chr3 132944501 132944553 -94580025 + L2 LINE L2 3252 3303 -10 1552 279 43 11 chr3 132944618 132945088 -94579490 + L2 LINE L2 2213 2697 -617 219 365 24 36 chr3 132945211 132945378 -94579200 - L2 LINE L2 -1291 2023 1859 1126 194 44 4 chr3 132945719 132945946 -94578632 - MER46A DNA MER2_type 0 236 1 24 0 0 0 chr3 132946077 132946101 -94578477 + AT_rich Low_complexity Low_complexity 1 24 0 378 0 0 0 chr3 132948601 132948643 -94575935 + (TAGA)n Simple_repeat Simple_repeat 1 42 0 405 250 45 0 chr3 132948701 132948813 -94575765 + L1ME3A LINE L1 5773 5889 -281 570 236 118 5 chr3 132948829 132949032 -94575546 + L1ME3A LINE L1 5937 6162 -8 25 0 0 0 chr3 132950799 132950824 -94573754 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3 132951049 132951072 -94573506 + AT_rich Low_complexity Low_complexity 1 23 0 530 288 24 6 chr3 132952545 132952715 -94571863 - MER97c DNA MER1_type? -914 176 4 256 309 164 13 chr3 132953875 132954027 -94570551 - L2 LINE L2 -1 3271 3097 2323 123 0 0 chr3 132954756 132955065 -94569513 - AluSx SINE Alu 0 312 4 206 62 31 0 chr3 132957629 132957661 -94566917 + (TG)n Simple_repeat Simple_repeat 2 34 0 201 154 0 0 chr3 132958411 132958450 -94566128 + A-rich Low_complexity Low_complexity 1 39 0 180 0 0 0 chr3 132959433 132959453 -94565125 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1534 165 12 70 chr3 132959536 132959863 -94564715 + AluJo SINE Alu 1 308 -4 25 0 0 0 chr3 132960295 132960320 -94564258 + AT_rich Low_complexity Low_complexity 1 25 0 203 349 35 23 chr3 132960669 132960755 -94563823 + L2 LINE L2 2897 2983 -289 1882 195 77 104 chr3 132960761 132961485 -94563093 + LTR8A LTR ERV1 1 705 -22 21 71 0 0 chr3 132961883 132961925 -94562653 + AT_rich Low_complexity Low_complexity 1 42 0 244 265 15 0 chr3 132962071 132962139 -94562439 + MER69 DNA AcHobo 17 85 -2441 2171 85 3 57 chr3 132962181 132962499 -94562079 - AluSx SINE Alu -11 301 1 5465 50 3 4 chr3 132963059 132964343 -94560235 + L1PA3 LINE L1 4667 5950 -205 785 342 4 4 chr3 132964392 132964632 -94559946 - MIR SINE MIR -4 258 19 504 0 0 0 chr3 132966425 132966481 -94558097 + (TG)n Simple_repeat Simple_repeat 1 56 0 532 329 82 4 chr3 132969993 132970224 -94554354 + MIR SINE MIR 7 255 -7 22 0 0 0 chr3 132971150 132971172 -94553406 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 132971495 132971518 -94553060 + AT_rich Low_complexity Low_complexity 1 23 0 2215 114 7 0 chr3 132975190 132975488 -94549090 - AluSx SINE Alu -12 300 1 219 306 20 10 chr3 132975651 132975749 -94548829 + CT-rich Low_complexity Low_complexity 2 100 0 561 244 3 13 chr3 132975749 132976045 -94548533 + C-rich Low_complexity Low_complexity 1 293 0 1919 130 15 0 chr3 132976516 132976786 -94547792 - AluSx SINE Alu -38 274 1 2233 116 10 3 chr3 132976801 132977102 -94547476 - AluSp SINE Alu -10 303 1 275 230 90 40 chr3 132977103 132977203 -94547375 - MER46C DNA MER2_type -232 106 2 226 293 0 0 chr3 132977265 132977323 -94547255 + MIR SINE MIR 83 140 -122 845 185 62 0 chr3 132977926 132978088 -94546490 - MER5A DNA MER1_type 0 189 18 512 233 103 7 chr3 132978150 132978296 -94546282 - MIR SINE MIR -12 250 91 205 377 68 20 chr3 132979196 132979342 -94545236 - L2 LINE L2 -50 3222 3070 1916 144 32 30 chr3 132979942 132980281 -94544297 - THE1C LTR MaLR -35 340 1 23 0 0 0 chr3 132982797 132982820 -94541758 + AT_rich Low_complexity Low_complexity 1 23 0 221 341 24 12 chr3 132983406 132983488 -94541090 - L2 LINE L2 -15 3257 3175 257 293 0 0 chr3 132984120 132984195 -94540383 - Charlie2b DNA MER1_type -1852 930 856 319 278 56 0 chr3 132984834 132984924 -94539654 - MER63 DNA MER1_type -2 1060 966 * 448 220 156 0 chr3 132984916 132985025 -94539553 - MER63 DNA MER1_type -84 752 1 3201 204 5 5 chr3 132985076 132985714 -94538864 - L1 LINE L1 -1778 4368 3731 5198 116 11 7 chr3 132985859 132986619 -94537959 + L1MA3 LINE L1 5543 6305 0 3222 51 3 0 chr3 132987039 132987414 -94537164 - L1PA4 LINE L1 -1 6154 5779 2306 107 0 9 chr3 132987414 132987740 -94536838 - THE1C LTR MaLR -52 323 1 2449 91 44 14 chr3 132987740 132988103 -94536475 - THE1C-int LTR MaLR 0 1580 1207 216 0 0 0 chr3 132988610 132988634 -94535944 + (A)n Simple_repeat Simple_repeat 1 24 0 625 265 87 58 chr3 132991457 132991835 -94532743 + L2 LINE L2 2923 3311 -2 871 196 6 0 chr3 132992272 132992440 -94532138 - L1 LINE L1 -3600 2546 2378 2280 116 3 0 chr3 132992612 132992923 -94531655 + AluSx SINE Alu 1 312 0 714 268 102 8 chr3 132993325 132993560 -94531018 + LTR16B LTR ERVL 208 464 0 736 247 99 115 chr3 132994681 132995287 -94529291 + MLT1H LTR MaLR 37 590 0 1684 230 31 29 chr3 132995293 132995740 -94528838 - MER39 LTR ERV1 0 707 260 619 171 29 0 chr3 132996228 132996333 -94528245 - AluSg/x SINE Alu -15 294 187 395 260 10 20 chr3 132996395 132996495 -94528083 + MIR SINE MIR 66 164 -98 3005 25 3 3 chr3 133097239 133097594 -94426984 + L1PA5 LINE L1 5791 6145 -9 195 69 0 0 chr3 133097882 133097911 -94426667 + (A)n Simple_repeat Simple_repeat 1 29 0 237 108 0 0 chr3 133098324 133098361 -94426217 + (TGAA)n Simple_repeat Simple_repeat 2 38 0 230 255 0 0 chr3 133100336 133100383 -94424195 + (CATA)n Simple_repeat Simple_repeat 3 49 0 350 260 0 42 chr3 133100392 133100488 -94424090 + L1MC4 LINE L1 6614 6705 -1337 331 272 0 22 chr3 133100456 133100548 -94424030 - L1MC4 LINE L1 -1339 6703 6614 * 310 308 0 0 chr3 133100470 133100561 -94424017 + L1MC4 LINE L1 6614 6704 -1338 * 880 201 52 10 chr3 133100864 133101058 -94423520 + MER20 DNA MER1_type 18 219 0 219 333 0 0 chr3 133101386 133101461 -94423117 - MIR SINE MIR -56 152 78 838 272 22 0 chr3 133104129 133104313 -94420265 - MER5A DNA MER1_type 0 189 2 24 0 0 0 chr3 133104787 133104811 -94419767 + AT_rich Low_complexity Low_complexity 1 24 0 1047 183 19 1 chr3 133105050 133105362 -94419216 - MLT1A1 LTR MaLR 0 365 14 314 353 113 16 chr3 133105408 133105717 -94418861 - L2 LINE L2 -3 3269 2931 529 297 28 46 chr3 133108096 133108319 -94416259 - MIR SINE MIR -37 225 3 446 303 130 29 chr3 133109170 133109408 -94415170 + MIR SINE MIR 1 262 0 14447 143 24 7 chr3 133110166 133112545 -94412033 + Tigger1 DNA MER2_type 1 2418 0 211 135 0 27 chr3 133112765 133112802 -94411776 + (TTTC)n Simple_repeat Simple_repeat 4 39 0 212 365 9 9 chr3 133113874 133113981 -94410597 + MIR SINE MIR 27 133 -129 1083 152 0 5 chr3 133114421 133114612 -94409966 + L1MA6 LINE L1 6110 6299 -1 195 288 41 0 chr3 133114978 133115051 -94409527 + MIR3 SINE MIR 129 204 -4 2174 96 7 23 chr3 133116164 133116465 -94408113 + AluSg SINE Alu 1 296 -14 239 389 102 6 chr3 133116556 133116723 -94407855 - L2 LINE L2 -353 2961 2779 248 384 0 0 chr3 133116785 133116897 -94407681 - L2 LINE L2 -695 2619 2508 361 276 86 35 chr3 133116906 133117022 -94407556 + L2 LINE L2 3151 3272 0 261 0 0 0 chr3 133117319 133117348 -94407230 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 369 0 0 0 chr3 133117832 133117873 -94406705 + (CA)n Simple_repeat Simple_repeat 2 42 0 255 258 84 24 chr3 133117930 133118097 -94406481 + L1ME4a LINE L1 5744 5920 -201 198 171 0 0 chr3 133118624 133118665 -94405913 + (TTTA)n Simple_repeat Simple_repeat 3 43 0 189 389 23 53 chr3 133118757 133118888 -94405690 + L2 LINE L2 2933 3059 -213 904 199 0 15 chr3 133119018 133119224 -94405354 - L1MB1 LINE L1 0 6168 5966 6687 131 37 47 chr3 133120704 133121944 -94402634 + Tigger3b DNA MER2_type 1 1228 -3 956 291 166 5 chr3 133123303 133123827 -94400751 - L2 LINE L2 0 3313 2710 410 126 53 33 chr3 133123903 133124197 -94400381 + (TTATA)n Simple_repeat Simple_repeat 1 299 0 30 0 0 0 chr3 133124197 133124227 -94400351 + AT_rich Low_complexity Low_complexity 1 30 0 411 302 137 38 chr3 133125299 133125511 -94399067 - MIR SINE MIR 0 262 30 396 285 91 83 chr3 133125509 133125751 -94398827 + MIR SINE MIR 17 260 -2 * 2556 42 0 6 chr3 133127454 133127766 -94396812 - AluY SINE Alu -1 310 1 216 275 200 38 chr3 133129881 133130041 -94394537 - MIR3 SINE MIR -22 186 1 795 293 140 21 chr3 133131427 133131806 -94392772 + LTR16C LTR ERVL 64 487 -4 234 316 0 26 chr3 133133754 133133830 -94390748 - L2 LINE L2 -8 3305 3232 348 64 0 0 chr3 133134948 133134995 -94389583 + (CA)n Simple_repeat Simple_repeat 2 48 0 274 317 19 10 chr3 133135654 133135758 -94388820 + MIR SINE MIR 98 202 -60 228 135 0 0 chr3 133136190 133136227 -94388351 + (TC)n Simple_repeat Simple_repeat 1 37 0 214 204 0 20 chr3 133136568 133136617 -94387961 + GA-rich Low_complexity Low_complexity 1 48 0 220 271 68 25 chr3 133136659 133136777 -94387801 - MIR SINE MIR -49 213 91 3071 148 40 24 chr3 133139668 133139739 -94384839 + L1MA9 LINE L1 5710 5778 -534 468 0 0 0 chr3 133139739 133139791 -94384787 + (CA)n Simple_repeat Simple_repeat 2 53 0 3071 148 40 24 chr3 133139791 133140312 -94384266 + L1MA9 LINE L1 5778 6312 0 618 250 37 0 chr3 133140567 133140703 -94383875 + MER5A DNA MER1_type 1 141 -48 248 146 0 18 chr3 133142252 133142307 -94382271 - L1MB2 LINE L1 -12 6159 6106 33 0 0 0 chr3 133142310 133142343 -94382235 + AT_rich Low_complexity Low_complexity 1 33 0 294 348 54 9 chr3 133142429 133142541 -94382037 - MIR SINE MIR -72 136 20 353 361 23 0 chr3 133143577 133143707 -94380871 + MIR3 SINE MIR 30 162 -46 1271 205 0 0 chr3 133143739 133143963 -94380615 + MER58A DNA MER1_type 1 224 0 26 30 0 0 chr3 133144952 133144985 -94379593 + AT_rich Low_complexity Low_complexity 1 33 0 246 267 13 27 chr3 133145011 133145086 -94379492 + MIR SINE MIR 53 126 -136 390 317 106 11 chr3 133145213 133145393 -94379185 - MIR SINE MIR -64 198 2 290 304 54 18 chr3 133146630 133146742 -94377836 + L2 LINE L2 3167 3282 -31 366 200 191 35 chr3 133147063 133147178 -94377400 + MER69 DNA AcHobo 7 139 -2387 204 97 0 0 chr3 133150151 133150182 -94374396 + (CAA)n Simple_repeat Simple_repeat 2 32 0 21 0 0 0 chr3 133150418 133150439 -94374139 + AT_rich Low_complexity Low_complexity 1 21 0 1599 215 25 12 chr3 133151042 133151367 -94373211 + MLT1A1 LTR MaLR 13 341 -24 1572 292 58 58 chr3 133151465 133152436 -94372142 + L2 LINE L2 2344 3312 -1 210 349 12 12 chr3 133155297 133155383 -94369195 + L2 LINE L2 3228 3313 0 283 336 32 24 chr3 133156506 133156631 -94367947 + MIR SINE MIR 64 189 -73 1724 190 61 3 chr3 133156727 133157053 -94367525 + MLT1A1 LTR MaLR 21 365 0 6254 213 84 43 chr3 133157053 133158707 -94365871 + MLT1A1-int LTR MaLR 1 1722 -13 1514 234 21 12 chr3 133158755 133159093 -94365485 + MLT1A1 LTR MaLR 25 365 0 44 99 0 0 chr3 133159795 133159937 -94364641 + AT_rich Low_complexity Low_complexity 1 142 0 7744 236 47 7 chr3 133161150 133161499 -94363079 - L1PA15-16 LINE L1 -1709 5140 4806 1999 122 69 28 chr3 133161499 133161859 -94362719 - THE1C LTR MaLR 0 375 1 7744 236 47 7 chr3 133161859 133163818 -94360760 - L1PA15-16 LINE L1 -2043 4806 2736 5057 139 24 35 chr3 133163821 133165544 -94359034 + L1PA16 LINE L1 4445 6165 -1 1855 150 169 5 chr3 133165988 133166355 -94358223 + MSTA LTR MaLR 1 427 -1 1301 188 20 77 chr3 133166355 133166653 -94357925 - AluJo SINE Alu -31 281 1 2810 13 0 0 chr3 133166662 133166969 -94357609 - AluYa5 SINE Alu -4 307 1 525 285 0 0 chr3 133167122 133167252 -94357326 - MER94 DNA DNA 0 134 5 198 355 100 9 chr3 133167655 133167765 -94356813 - L2 LINE L2 -4 3309 3190 228 253 67 40 chr3 133168686 133168761 -94355817 + L2 LINE L2 3124 3200 -72 216 0 0 0 chr3 133169029 133169053 -94355525 + (T)n Simple_repeat Simple_repeat 1 24 0 212 283 52 32 chr3 133169815 133169990 -94354588 - MIR SINE MIR -23 239 6 612 196 45 15 chr3 133170227 133170360 -94354218 + MER20 DNA MER1_type 18 154 -65 316 373 8 8 chr3 133171040 133171158 -94353420 + MIR3 SINE MIR 81 198 -10 370 357 91 21 chr3 133171192 133171335 -94353243 - L2 LINE L2 -2 3270 3118 231 240 0 0 chr3 133172485 133172535 -94352043 + L2 LINE L2 2657 2706 -608 248 333 90 0 chr3 133172848 133172926 -94351652 - L2 LINE L2 -1 3271 3187 25 95 0 0 chr3 133173574 133173648 -94350930 + AT_rich Low_complexity Low_complexity 1 74 0 463 329 108 48 chr3 133173960 133174258 -94350320 + L1M4 LINE L1 3365 3644 -2502 1727 202 8 13 chr3 133174258 133174640 -94349938 + L1MA8 LINE L1 5905 6284 -7 463 329 108 48 chr3 133174640 133174903 -94349675 + L1M4 LINE L1 3644 3960 -2186 27 0 0 0 chr3 133175073 133175100 -94349478 + AT_rich Low_complexity Low_complexity 1 27 0 658 168 21 21 chr3 133175225 133175368 -94349210 + L1MB3 LINE L1 6032 6174 -9 2139 74 0 28 chr3 133175500 133175785 -94348793 + AluSc SINE Alu 28 304 -5 300 339 18 0 chr3 133175995 133176107 -94348471 - MIR SINE MIR 0 262 149 980 195 15 19 chr3 133176111 133176316 -94348262 + MER2 DNA MER2_type 7 210 -135 452 218 77 77 chr3 133176399 133176555 -94348023 - MIR SINE MIR -104 158 3 22 0 0 0 chr3 133176903 133176925 -94347653 + AT_rich Low_complexity Low_complexity 1 22 0 21 89 0 0 chr3 133177107 133177163 -94347415 + AT_rich Low_complexity Low_complexity 1 56 0 193 289 22 0 chr3 133177171 133177216 -94347362 + MIR SINE MIR 3 48 -214 180 0 0 0 chr3 133178160 133178180 -94346398 + (CCA)n Simple_repeat Simple_repeat 3 22 0 2029 94 0 8 chr3 133180334 133180600 -94343978 - AluSc SINE Alu -18 291 28 658 168 21 21 chr3 133180732 133180875 -94343703 - L1MB3 LINE L1 -9 6174 6032 27 0 0 0 chr3 133181000 133181027 -94343551 + AT_rich Low_complexity Low_complexity 1 27 0 645 312 138 42 chr3 133181197 133181460 -94343118 - L1M4 LINE L1 -2186 3960 3723 1711 204 8 13 chr3 133181460 133181842 -94342736 - L1MA8 LINE L1 -7 6284 5905 645 312 138 42 chr3 133181842 133182354 -94342224 - L1M4 LINE L1 -2423 3723 3111 25 95 0 0 chr3 133182452 133182526 -94342052 + AT_rich Low_complexity Low_complexity 1 74 0 250 355 123 36 chr3 133183113 133183251 -94341327 + L2 LINE L2 3122 3271 -1 231 240 0 0 chr3 133183564 133183614 -94340964 - L2 LINE L2 -608 2706 2657 370 357 91 21 chr3 133184762 133184905 -94339673 + L2 LINE L2 3118 3270 -2 316 373 8 8 chr3 133184939 133185057 -94339521 - MIR3 SINE MIR -10 198 81 596 236 61 6 chr3 133185464 133185629 -94338949 + MLT1J1 LTR MaLR 1 174 -272 669 302 17 0 chr3 133186067 133186246 -94338332 - MER5A DNA MER1_type 0 189 8 382 202 45 22 chr3 133187437 133187526 -94337052 - MIR SINE MIR -44 218 128 504 185 6 28 chr3 133187882 133188060 -94336518 + (TA)n Simple_repeat Simple_repeat 1 174 0 230 208 20 99 chr3 133188062 133188163 -94336415 - L1MC4 LINE L1 -1336 6706 6614 192 152 0 0 chr3 133188374 133188407 -94336171 + (CAT)n Simple_repeat Simple_repeat 1 33 0 693 233 40 0 chr3 133188673 133188823 -94335755 + MIR SINE MIR 2 157 -105 23 0 0 0 chr3 133190031 133190054 -94334524 + AT_rich Low_complexity Low_complexity 1 23 0 291 259 129 17 chr3 133190403 133190519 -94334059 - MIR3 SINE MIR -15 193 65 645 161 8 16 chr3 133191583 133191707 -94332871 - L1PA13 LINE L1 -18 6145 6023 208 307 133 33 chr3 133192172 133192322 -94332256 + MIR3 SINE MIR 5 169 -39 249 269 0 15 chr3 133192380 133192447 -94332131 - MIR SINE MIR 0 262 197 369 296 115 15 chr3 133192814 133193152 -94331426 + L1ME4a LINE L1 5745 6116 -5 204 182 0 0 chr3 133194577 133194610 -94329968 - MIR SINE MIR -103 105 73 200 246 70 0 chr3 133194754 133194811 -94329767 + MIR SINE MIR 117 177 -85 440 335 78 41 chr3 133194902 133195482 -94329096 + L2 LINE L2 2482 3077 -195 238 310 138 0 chr3 133196703 133196790 -94327788 - MIR3 SINE MIR -103 105 7 189 107 0 0 chr3 133196886 133196914 -94327664 + (TTTTG)n Simple_repeat Simple_repeat 5 32 0 181 304 54 0 chr3 133197213 133197269 -94327309 - MIR SINE MIR -87 175 117 1548 215 0 7 chr3 133197974 133198291 -94326287 - AluJb SINE Alu 0 315 1 2085 122 7 14 chr3 133198339 133198635 -94325943 - AluSq SINE Alu -14 299 6 1404 209 10 34 chr3 133198848 133199144 -94325434 + AluJb SINE Alu 1 289 -13 229 217 17 17 chr3 133201799 133201859 -94322719 + (TG)n Simple_repeat Simple_repeat 2 61 0 241 206 14 14 chr3 133202305 133202378 -94322200 + CT-rich Low_complexity Low_complexity 1 73 0 298 224 0 0 chr3 133202396 133202463 -94322115 + G-rich Low_complexity Low_complexity 1 67 0 498 151 16 8 chr3 133202671 133202797 -94321781 + (CA)n Simple_repeat Simple_repeat 2 128 0 216 306 125 66 chr3 133203615 133203935 -94320643 + L2 LINE L2 1715 2053 -1261 226 293 0 45 chr3 133204210 133204367 -94320211 + GA-rich Low_complexity Low_complexity 4 153 0 305 257 19 20 chr3 133204399 133205059 -94319519 + GA-rich Low_complexity Low_complexity 1 659 0 256 311 0 0 chr3 133205063 133205137 -94319441 + C-rich Low_complexity Low_complexity 1 74 0 426 161 17 8 chr3 133205375 133205493 -94319085 + (CA)n Simple_repeat Simple_repeat 2 120 0 351 292 29 40 chr3 133206839 133207006 -94317572 + MIR3 SINE MIR 3 163 -70 1164 182 5 19 chr3 133207029 133207243 -94317335 - MER20 DNA MER1_type -3 216 6 181 330 10 52 chr3 133207546 133207643 -94316935 - MIR SINE MIR -79 129 37 229 378 47 8 chr3 133207659 133207786 -94316792 + L2 LINE L2 2572 2703 -611 498 219 89 27 chr3 133207848 133207994 -94316584 + MER5B DNA MER1_type 23 177 -1 202 333 33 11 chr3 133208202 133208292 -94316286 + MIR SINE MIR 9 100 -162 315 357 6 33 chr3 133208408 133208590 -94315988 + MER5A DNA MER1_type 7 183 -6 310 296 47 71 chr3 133208440 133208609 -94315969 - MER5A DNA MER1_type -22 167 3 * 978 214 5 10 chr3 133208652 133208853 -94315725 - MER20 DNA MER1_type -4 215 16 246 261 46 0 chr3 133208883 133208948 -94315630 - MIR3 SINE MIR -49 159 92 214 324 88 10 chr3 133209499 133209601 -94314977 - MER5B DNA MER1_type -1 177 79 294 330 28 18 chr3 133212458 133212567 -94312011 + L2 LINE L2 3204 3313 0 15621 108 13 2 chr3 133214210 133216660 -94307918 - L1PA7 LINE L1 0 6154 3667 279 0 0 0 chr3 133216660 133216691 -94307887 + (TTG)n Simple_repeat Simple_repeat 3 33 0 15621 108 13 2 chr3 133216691 133217381 -94307197 - L1PA7 LINE L1 -2487 3667 2986 25 31 0 0 chr3 133218459 133218491 -94306087 + AT_rich Low_complexity Low_complexity 1 32 0 24 77 0 0 chr3 133221256 133221308 -94303270 + AT_rich Low_complexity Low_complexity 1 52 0 470 329 14 0 chr3 133221572 133221718 -94302860 - MIR3 SINE MIR -3 205 58 341 286 41 0 chr3 133222484 133222582 -94301996 - MIR3 SINE MIR -10 198 97 2221 105 6 6 chr3 133222875 133223188 -94301390 - AluSp SINE Alu 0 313 1 769 299 84 19 chr3 133223739 133224294 -94300284 + L2 LINE L2 2589 3230 -83 1555 177 21 42 chr3 133224992 133225280 -94299298 + AluJo SINE Alu 1 282 -30 203 327 69 20 chr3 133226395 133226496 -94298082 + L2 LINE L2 3175 3280 -33 25 83 0 0 chr3 133226966 133227026 -94297552 + AT_rich Low_complexity Low_complexity 1 60 0 1682 280 101 21 chr3 133228522 133230162 -94294416 - L1MC4 LINE L1 -95 7713 5951 566 318 98 32 chr3 133230264 133231379 -94293199 - L1MC4 LINE L1 -904 5242 4055 24 67 0 0 chr3 133232139 133232184 -94292394 + AT_rich Low_complexity Low_complexity 1 45 0 7282 187 38 4 chr3 133232339 133232494 -94292084 - L1PB3 LINE L1 -206 6651 6503 360 0 0 0 chr3 133232494 133232534 -94292044 + (TG)n Simple_repeat Simple_repeat 2 41 0 7282 187 38 4 chr3 133232534 133233003 -94291575 - L1PB3 LINE L1 -354 6503 6052 197 81 0 27 chr3 133233003 133233040 -94291538 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 7282 187 38 4 chr3 133233040 133234715 -94289863 - L1PB3 LINE L1 -805 6052 4269 24 0 0 0 chr3 133234715 133234739 -94289839 + AT_rich Low_complexity Low_complexity 1 24 0 5807 112 14 0 chr3 133234739 133235609 -94288969 - L1MA1 LINE L1 -4 6298 5417 2090 90 21 0 chr3 133235610 133235898 -94288680 + THE1A LTR MaLR 62 355 0 1484 153 11 8 chr3 133235903 133236164 -94288414 - L1MA1 LINE L1 -1812 4334 4073 5238 254 13 9 chr3 133236164 133237855 -94286723 - L1PB3 LINE L1 -2568 4281 2591 2688 194 95 11 chr3 133237836 133238665 -94285913 - L1PB3 LINE L1 -4551 2299 1398 * 387 282 15 13 chr3 133238705 133238862 -94285716 - L1PB3 LINE L1 -6709 141 5 1809 270 68 71 chr3 133238872 133239718 -94284860 - L1ME LINE L1 -4180 2081 1234 957 63 16 0 chr3 133239718 133239845 -94284733 - L1PA6 LINE L1 0 6154 6026 1809 270 68 71 chr3 133239845 133240464 -94284114 - L1ME LINE L1 -5027 1234 595 2054 116 14 0 chr3 133240464 133240757 -94283821 - AluSq SINE Alu -16 297 1 1809 270 68 71 chr3 133240757 133241262 -94283316 - L1ME LINE L1 -5666 595 90 2021 82 10 27 chr3 133241352 133241646 -94282932 - AluSg SINE Alu -21 289 1 22 56 0 0 chr3 133241931 133241967 -94282611 + AT_rich Low_complexity Low_complexity 1 36 0 304 313 49 45 chr3 133242257 133242500 -94282078 - HAL1b LINE L1 -734 614 371 22 0 0 0 chr3 133242654 133242676 -94281902 + AT_rich Low_complexity Low_complexity 1 22 0 198 0 0 0 chr3 133245806 133245828 -94278750 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 24 0 0 0 chr3 133246337 133246361 -94278217 + AT_rich Low_complexity Low_complexity 1 24 0 228 275 0 64 chr3 133246499 133246608 -94277970 + MLT1H LTR MaLR 431 532 -17 344 329 56 33 chr3 133247512 133247725 -94276853 + L1M4 LINE L1 3609 3826 -2320 332 335 133 44 chr3 133247821 133248429 -94276149 + L1M4 LINE L1 3961 4622 -1524 514 258 0 17 chr3 133248668 133248788 -94275790 + L1M3e LINE L1 1 118 -6912 6809 247 53 40 chr3 133248788 133252237 -94272341 + L1M3e LINE L1 1123 4307 -2799 333 68 0 0 chr3 133252237 133252281 -94272297 + (TA)n Simple_repeat Simple_repeat 2 45 0 6809 247 53 40 chr3 133252281 133253239 -94271339 + L1M3e LINE L1 4307 5251 -1855 1603 205 42 25 chr3 133253244 133253692 -94270886 + L1MA9 LINE L1 4095 4550 -1596 21 0 0 0 chr3 133256312 133256333 -94268245 + AT_rich Low_complexity Low_complexity 1 21 0 316 266 75 62 chr3 133256944 133257170 -94267408 - L3 LINE CR1 -730 847 619 1536 189 65 28 chr3 133259045 133259400 -94265178 + MLT1B LTR MaLR 23 390 0 400 291 16 16 chr3 133259444 133259571 -94265007 - MIR3 SINE MIR -74 134 8 442 232 67 77 chr3 133259914 133260108 -94264470 - L1MC/D LINE L1 -2053 5755 5564 257 237 51 59 chr3 133262142 133262260 -94262318 - MER103 DNA DNA -5 161 45 1672 169 61 25 chr3 133262836 133263198 -94261380 + THE1C LTR MaLR 1 375 0 234 62 0 0 chr3 133263911 133263943 -94260635 + (TG)n Simple_repeat Simple_repeat 1 32 0 2116 278 34 18 chr3 133265075 133265810 -94258768 + MER20B DNA MER1_type 1 747 -36 1910 214 61 65 chr3 133265870 133266426 -94258152 + MLT2B3 LTR ERVL 1 554 0 24 77 0 0 chr3 133267976 133268028 -94256550 + AT_rich Low_complexity Low_complexity 1 52 0 2273 92 3 0 chr3 133268484 133268778 -94255800 + AluSq SINE Alu 1 295 -18 207 162 0 0 chr3 133269448 133269485 -94255093 + GA-rich Low_complexity Low_complexity 1 37 0 186 118 0 59 chr3 133269587 133269638 -94254940 + (GAGAA)n Simple_repeat Simple_repeat 4 51 0 379 158 11 21 chr3 133269649 133269744 -94254834 + G-rich Low_complexity Low_complexity 1 94 0 5152 173 25 28 chr3 133269944 133271620 -94252958 + L1MA9 LINE L1 4639 6311 -1 274 110 93 10 chr3 133271814 133271987 -94252591 + AluSg SINE Alu 6 266 -34 405 318 24 24 chr3 133271987 133272113 -94252465 + MIR SINE MIR 32 157 -105 1803 167 7 0 chr3 133272180 133272474 -94252104 + AluSq SINE Alu 6 301 -12 27 18 6 0 chr3 133272541 133272610 -94251968 + AT_rich Low_complexity Low_complexity 1 34 0 259 206 130 11 chr3 133272635 133272727 -94251851 - L1ME1 LINE L1 -66 6100 5998 281 264 11 28 chr3 133272801 133272935 -94251643 + L1ME LINE L1 5689 5818 -303 231 88 0 0 chr3 133272938 133272972 -94251606 + (TG)n Simple_repeat Simple_repeat 2 35 0 2533 41 22 6 chr3 133273209 133273528 -94251050 - L1PA5 LINE L1 0 6154 5831 8626 26 1 2 chr3 133273529 133274981 -94249597 + L1PA5 LINE L1 4365 5814 -341 1325 231 112 50 chr3 133275008 133275708 -94248870 - L1ME1 LINE L1 -214 5950 5210 1512 249 66 11 chr3 133275728 133276330 -94248248 - L1ME LINE L1 -451 5784 5156 3733 297 52 19 chr3 133276336 133278440 -94246138 - L1ME LINE L1 -1656 4559 2388 870 124 0 23 chr3 133278447 133278576 -94246002 - FLAM_C SINE Alu -17 126 1 558 293 105 3 chr3 133278577 133278901 -94245677 - L1ME LINE L1 -3957 2439 2083 201 179 0 26 chr3 133279157 133279196 -94245382 + (CAA)n Simple_repeat Simple_repeat 2 39 0 264 59 0 0 chr3 133279520 133279554 -94245024 + (CA)n Simple_repeat Simple_repeat 1 34 0 856 339 48 14 chr3 133280226 133280663 -94243915 - LTR16B LTR ERVL 0 464 13 225 171 0 0 chr3 133281537 133281578 -94243000 + MER3 DNA MER1_type 10 50 -159 283 181 75 21 chr3 133281580 133281674 -94242904 + L1ME3 LINE L1 6060 6158 -4 21 57 0 0 chr3 133283165 133283200 -94241378 + AT_rich Low_complexity Low_complexity 1 35 0 281 320 10 0 chr3 133283203 133283303 -94241275 + (TA)n Simple_repeat Simple_repeat 1 101 0 225 179 89 0 chr3 133283728 133283784 -94240794 + LTR66 LTR ERVL 379 439 -171 297 345 25 42 chr3 133283787 133283906 -94240672 + L2 LINE L2 3140 3256 -16 1709 214 40 88 chr3 133283927 133284579 -94239999 - MLT1E2 LTR MaLR -10 616 3 399 198 0 0 chr3 133286851 133286937 -94237641 - L1MC2 LINE L1 -9 6335 6250 10600 28 0 1 chr3 133287071 133289116 -94235462 + L1PA3 LINE L1 4125 6167 0 2321 170 135 2 chr3 133289127 133289638 -94234940 - L1 LINE L1 -1194 4952 4374 1295 206 104 15 chr3 133289657 133289992 -94234586 - MLT1A1 LTR MaLR 0 365 1 3815 167 48 95 chr3 133289992 133290032 -94234546 + L1MA9 LINE L1 4971 5011 -1301 1920 157 0 0 chr3 133290032 133290354 -94234224 - AluSx SINE Alu 0 322 1 3815 167 48 95 chr3 133290354 133291719 -94232859 + L1MA9 LINE L1 5011 6298 -14 770 304 122 47 chr3 133291970 133292371 -94232207 - LTR16B LTR ERVL 0 464 34 21258 167 25 18 chr3 133292778 133296530 -94228048 - L1MA3 LINE L1 0 7724 3998 1357 233 21 3 chr3 133296530 133296817 -94227761 - AluJo SINE Alu -18 294 3 21258 167 25 18 chr3 133296817 133297352 -94227226 - L1MA3 LINE L1 -3726 3998 3468 2494 52 0 0 chr3 133297352 133297639 -94226939 - AluY SINE Alu -8 303 17 21258 167 25 18 chr3 133297639 133297714 -94226864 - L1MA3 LINE L1 -4256 3468 3395 328 20 41 0 chr3 133297714 133297763 -94226815 + (TA)n Simple_repeat Simple_repeat 2 52 0 2149 109 3 0 chr3 133297763 133298048 -94226530 - AluSp SINE Alu -27 286 1 21258 167 25 18 chr3 133298048 133299614 -94224964 - L1MA3 LINE L1 -4329 3395 1841 234 0 0 0 chr3 133299614 133299640 -94224938 + (TC)n Simple_repeat Simple_repeat 1 26 0 21258 167 25 18 chr3 133299640 133301367 -94223211 - L1MA3 LINE L1 -5883 1841 14 201 108 0 0 chr3 133301674 133301711 -94222867 + (CA)n Simple_repeat Simple_repeat 2 38 0 22 35 0 0 chr3 133301968 133301997 -94222581 + AT_rich Low_complexity Low_complexity 1 29 0 661 269 185 18 chr3 133302616 133303006 -94221572 + L1MC4 LINE L1 5660 6114 -1928 2644 251 98 22 chr3 133303167 133304911 -94219667 + L1ME2 LINE L1 4268 6153 -11 2465 85 0 0 chr3 133309297 133309604 -94214974 + AluSx SINE Alu 1 307 -5 1217 245 68 19 chr3 133309670 133310091 -94214487 + MLT2D LTR ERVL 3 487 -33 432 0 0 0 chr3 133310091 133310139 -94214439 + (TG)n Simple_repeat Simple_repeat 2 49 0 1217 245 68 19 chr3 133310139 133310175 -94214403 + MLT2D LTR ERVL 487 520 0 217 211 0 0 chr3 133310548 133310586 -94213992 + (CA)n Simple_repeat Simple_repeat 1 38 0 23 0 0 0 chr3 133310667 133310690 -94213888 + AT_rich Low_complexity Low_complexity 1 23 0 1009 305 116 30 chr3 133310845 133311455 -94213123 + MLT2F LTR ERVL 1 663 0 301 324 101 34 chr3 133311710 133311858 -94212720 - MIR3 SINE MIR -36 172 15 822 343 109 13 chr3 133311859 133312474 -94212104 + L3 LINE CR1 879 1552 -25 220 317 12 12 chr3 133313434 133313516 -94211062 + MER5B DNA MER1_type 17 98 -80 236 318 159 17 chr3 133313681 133313857 -94210721 - MIR SINE MIR -61 201 1 442 295 83 0 chr3 133314163 133314319 -94210259 - MER96 DNA MER1_type -2 173 5 3381 231 58 52 chr3 133315224 133316454 -94208124 + L1MD2 LINE L1 4081 5302 -1057 2630 123 0 5 chr3 133316454 133316829 -94207749 + THE1C LTR MaLR 3 375 0 9381 116 30 59 chr3 133316829 133318456 -94206122 + THE1C-int LTR MaLR 1 1580 0 2715 103 0 3 chr3 133318458 133318828 -94205750 + THE1C LTR MaLR 3 371 -4 3381 231 58 52 chr3 133318828 133319358 -94205220 + L1MD2 LINE L1 5302 5827 -532 2317 72 0 10 chr3 133319358 133319648 -94204930 + AluY SINE Alu 16 302 -9 3381 231 58 52 chr3 133319648 133319711 -94204867 + L1MD2 LINE L1 5827 5888 -471 3258 49 0 5 chr3 133319711 133320118 -94204460 - L1PA8 LINE L1 -6 6166 5762 3381 231 58 52 chr3 133320118 133320422 -94204156 + L1MD2 LINE L1 5888 6267 -92 843 147 5 100 chr3 133320995 133321185 -94203393 - L1PB4 LINE L1 -1 6155 5984 22 0 0 0 chr3 133322535 133322557 -94202021 + AT_rich Low_complexity Low_complexity 1 22 0 195 276 103 86 chr3 133324100 133324216 -94200362 + L2 LINE L2 3187 3304 -9 912 184 70 50 chr3 133325376 133325817 -94198761 - LTR54 LTR ERV1 0 510 1 1577 253 61 17 chr3 133325819 133326281 -94198297 - MER57-int LTR ERV1 -393 7144 6663 4438 170 16 41 chr3 133326705 133328089 -94196489 - L1MA7 LINE L1 -213 6078 4732 826 236 28 37 chr3 133328092 133328418 -94196160 + L1M4 LINE L1 2750 3072 -3074 1380 284 83 20 chr3 133328906 133329399 -94195179 - MLT1E LTR MaLR 0 593 70 305 286 0 59 chr3 133330244 133330363 -94194215 + MIR SINE MIR 49 160 -102 237 269 0 0 chr3 133330451 133330503 -94194075 - MIR SINE MIR -2 260 209 214 300 0 0 chr3 133331714 133331774 -94192804 - MIR3 SINE MIR -37 171 112 2499 59 0 0 chr3 133331800 133332107 -94192471 - AluY SINE Alu -4 307 1 1697 166 29 0 chr3 133333601 133333878 -94190700 - AluJb SINE Alu -27 285 1 454 346 72 52 chr3 133335865 133336212 -94188366 + L2 LINE L2 2915 3268 -4 216 226 0 97 chr3 133337113 133337175 -94187403 + L3 LINE CR1 484 539 -1038 184 243 45 117 chr3 133337249 133337360 -94187218 + MIR SINE MIR 110 212 -50 1188 285 148 27 chr3 133337422 133338008 -94186570 + L3 LINE CR1 631 1287 -290 626 269 0 38 chr3 133338472 133338632 -94185946 - MER5A DNA MER1_type 0 189 36 305 23 0 23 chr3 133339020 133339064 -94185514 - L1PA3 LINE L1 -3 6152 6110 987 286 70 28 chr3 133339230 133339727 -94184851 - HAL1 LINE L1 -885 1622 1105 289 200 38 0 chr3 133339736 133339816 -94184762 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 434 214 107 38 chr3 133340215 133340374 -94184204 - L2 LINE L2 -116 3197 3028 1417 120 0 0 chr3 133340388 133340605 -94183973 + L1PA14 LINE L1 5943 6159 -2 441 257 0 71 chr3 133340624 133340764 -94183814 + L2 LINE L2 3184 3313 0 2318 101 0 0 chr3 133340810 133341107 -94183471 - AluSg SINE Alu -12 298 2 684 241 29 8 chr3 133341875 133342048 -94182530 - MER5B DNA MER1_type 0 189 1 229 224 0 0 chr3 133342055 133342104 -94182474 + T-rich Low_complexity Low_complexity 1 49 0 27 0 0 0 chr3 133342425 133342452 -94182126 + AT_rich Low_complexity Low_complexity 1 27 0 1105 111 184 21 chr3 133342977 133343167 -94181411 - MER30 DNA MER1_type -9 221 1 1492 290 103 41 chr3 133344862 133346978 -94177600 - L1ME3 LINE L1 -195 6778 4524 24 53 0 0 chr3 133347049 133347087 -94177491 + AT_rich Low_complexity Low_complexity 1 38 0 2927 247 20 37 chr3 133347128 133348702 -94175876 - L1ME1 LINE L1 -72 6094 4553 445 194 51 0 chr3 133348840 133348938 -94175640 - L1ME3 LINE L1 -2458 4499 4397 * 696 313 88 21 chr3 133348914 133349426 -94175152 - L1ME3 LINE L1 -3374 3583 3038 939 144 0 0 chr3 133350088 133350220 -94174358 - AluSp/q SINE Alu -23 290 159 340 280 88 52 chr3 133350291 133350484 -94174094 + L2 LINE L2 3114 3313 0 696 252 33 13 chr3 133352733 133352992 -94171586 - L1ME LINE L1 -439 5682 5414 1306 179 29 7 chr3 133353228 133353735 -94170843 + MER89 LTR ERV1 1 559 0 421 355 125 0 chr3 133353848 133354048 -94170530 + MIR SINE MIR 5 229 -33 244 359 0 19 chr3 133354638 133354741 -94169837 - MER5A DNA MER1_type -88 101 1 203 304 0 0 chr3 133354804 133354850 -94169728 + polypurine Low_complexity Low_complexity 6 51 0 513 76 0 0 chr3 133355240 133355319 -94169259 + (CA)n Simple_repeat Simple_repeat 2 80 0 2057 109 58 0 chr3 133355733 133356026 -94168552 - AluSg SINE Alu 0 310 1 194 304 87 11 chr3 133356095 133356187 -94168391 + MIR SINE MIR 163 261 -1 406 250 90 7 chr3 133356508 133356652 -94167926 - MIR SINE MIR -56 206 51 186 187 0 40 chr3 133356891 133356966 -94167612 + GA-rich Low_complexity Low_complexity 1 72 0 689 194 17 4 chr3 133356982 133357208 -94167370 + GA-rich Low_complexity Low_complexity 1 228 0 1243 178 172 28 chr3 133357502 133357822 -94166756 - MER47A DNA MER2_type 0 366 1 354 301 41 89 chr3 133357833 133357975 -94166603 - L1ME3 LINE L1 -4436 2702 2575 13458 146 31 14 chr3 133357975 133360350 -94164228 + Tigger1 DNA MER2_type 2 2417 -1 354 301 41 89 chr3 133360350 133360453 -94164125 - L1ME3 LINE L1 -4563 2575 2469 45 62 0 0 chr3 133360527 133360607 -94163971 + AT_rich Low_complexity Low_complexity 1 80 0 606 286 65 0 chr3 133360607 133360824 -94163754 - L1ME3 LINE L1 -4571 2388 2158 2675 228 40 41 chr3 133360869 133361901 -94162677 - L1ME3 LINE L1 -4862 1993 973 23534 137 24 55 chr3 133361929 133364459 -94160119 - L1PA8A LINE L1 -304 6142 3535 7443 35 10 0 chr3 133364459 133365516 -94159062 - L1PA4 LINE L1 -5 6150 5091 23534 137 24 55 chr3 133365516 133369209 -94155369 - L1PA8A LINE L1 -2911 3535 55 221 57 29 0 chr3 133369209 133369244 -94155334 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 23534 137 24 55 chr3 133369244 133369286 -94155292 - L1PA8A LINE L1 -6391 55 13 3135 270 27 49 chr3 133369277 133369454 -94155124 - L1ME3 LINE L1 -5876 983 804 * 2810 115 25 7 chr3 133369454 133369890 -94154688 - MLT2A1 LTR ERVL 0 444 1 3135 270 27 49 chr3 133369890 133370140 -94154438 - L1ME3 LINE L1 -6055 804 550 1469 194 30 68 chr3 133370140 133370608 -94153970 - LTR7 LTR ERV1 0 450 1 3135 270 27 49 chr3 133370608 133371174 -94153404 - L1ME3 LINE L1 -6309 550 11 1957 260 69 39 chr3 133371334 133372777 -94151801 - L1ME1 LINE L1 -5 6161 4622 3214 263 51 56 chr3 133372822 133374236 -94150342 + L1M4 LINE L1 26 1432 -5110 1590 174 46 20 chr3 133374356 133374660 -94149918 - MSTB LTR MaLR -73 353 42 2759 104 6 130 chr3 133374660 133375177 -94149401 - MLT2A2 LTR ERVL 0 453 1 307 109 22 0 chr3 133375177 133375221 -94149357 - MSTB LTR MaLR -380 46 2 2744 154 16 6 chr3 133375241 133375740 -94148838 + L1MA5 LINE L1 5793 6296 -4 2314 263 66 2 chr3 133375741 133376569 -94148009 + L1M4 LINE L1 2699 3579 -3065 1776 273 53 27 chr3 133376607 133377359 -94147219 + L1M4 LINE L1 3849 4620 -2024 1923 218 38 22 chr3 133377369 133377925 -94146653 + L1M4 LINE L1 4814 5378 -1266 2332 152 3 3 chr3 133377925 133378300 -94146278 - THE1C LTR MaLR 0 375 1 9459 112 36 45 chr3 133378300 133379320 -94145258 - THE1C-int LTR MaLR 0 1580 577 2192 97 28 0 chr3 133379320 133379608 -94144970 - AluSq SINE Alu -17 296 1 9459 112 36 45 chr3 133379608 133380131 -94144447 - THE1C-int LTR MaLR -1003 577 51 844 150 34 14 chr3 133380131 133380278 -94144300 + THE1B LTR MaLR 215 364 0 749 115 0 0 chr3 133380278 133380382 -94144196 + THE1C LTR MaLR 272 375 0 1115 151 34 71 chr3 133380413 133380651 -94143927 - THE1B LTR MaLR -135 229 1 2059 94 4 0 chr3 133380651 133380926 -94143652 - THE1C LTR MaLR -99 276 1 3594 180 35 15 chr3 133380926 133382066 -94142512 + L1MA7 LINE L1 5374 6534 -255 870 143 34 14 chr3 133382067 133382214 -94142364 + THE1B LTR MaLR 215 364 0 392 163 50 0 chr3 133382245 133382325 -94142253 + L1MA7 LINE L1 6513 6596 -193 679 256 52 10 chr3 133382329 133382630 -94141948 + MER6A DNA MER2_type 2 193 -412 3684 165 30 6 chr3 133382774 133383418 -94141160 + MER6A DNA MER2_type 195 593 -12 563 111 49 7 chr3 133383421 133383543 -94141035 + L1MA7 LINE L1 6098 6220 -71 * 4501 188 6 21 chr3 133383534 133384402 -94140176 + L1P LINE L1 11 865 -5281 7006 54 3 6 chr3 133384402 133385337 -94139241 + L1PA6 LINE L1 5219 6151 -3 260 159 0 0 chr3 133385337 133385381 -94139197 + MER31-int LTR ERV1 2921 2964 -1972 301 132 88 0 chr3 133385386 133385454 -94139124 + L1MA7 LINE L1 6191 6264 -27 27 29 0 0 chr3 133385473 133385507 -94139071 + AT_rich Low_complexity Low_complexity 1 34 0 4016 207 39 12 chr3 133385517 133386867 -94137711 + L1MB8 LINE L1 4786 6174 -4 2911 257 67 39 chr3 133386876 133388375 -94136203 - L1MEc LINE L1 -1540 4675 3134 729 278 255 38 chr3 133388421 133388864 -94135714 - MLT1F1 LTR MaLR -2 565 27 483 298 34 99 chr3 133388864 133389217 -94135361 - MLT1F1-int LTR MaLR -3 1368 1039 2112 170 72 5 chr3 133389608 133390009 -94134569 + MSTA LTR MaLR 1 428 0 266 247 140 0 chr3 133390271 133390364 -94134214 - MLT1F1-int LTR MaLR -790 581 476 4129 245 88 88 chr3 133390411 133391840 -94132738 + MLT1A1-int LTR MaLR 2 1477 -258 268 111 0 0 chr3 133391840 133391885 -94132693 - MADE1 DNA Mariner -35 45 1 4129 245 88 88 chr3 133391885 133392139 -94132439 + MLT1A1-int LTR MaLR 1476 1729 -6 5584 165 114 91 chr3 133392145 133393803 -94130775 + pTR5 LTR ERV1 743 2438 0 1499 220 48 20 chr3 133393810 133394164 -94130414 + MLT1A1 LTR MaLR 1 364 -1 1704 163 46 3 chr3 133394167 133394450 -94130128 - L1M4c LINE L1 -6077 307 13 1477 257 64 15 chr3 133394454 133395298 -94129280 - L1MEc LINE L1 -3637 2578 1731 34 0 0 0 chr3 133395350 133395384 -94129194 + AT_rich Low_complexity Low_complexity 1 34 0 1785 223 121 98 chr3 133395405 133395948 -94128630 + MER21B LTR ERV1 1 568 -295 1990 122 0 21 chr3 133395948 133396275 -94128303 - AluSx SINE Alu 0 322 2 1785 223 121 98 chr3 133396275 133396455 -94128123 + MER21B LTR ERV1 568 742 -121 234 260 14 14 chr3 133396677 133396750 -94127828 + L1M4 LINE L1 1539 1611 -4773 1422 254 63 55 chr3 133396789 133397817 -94126761 + L1M4 LINE L1 1856 3003 -3379 2256 50 4 4 chr3 133397817 133398143 -94126435 - AluY SINE Alu 0 326 1 1422 254 63 55 chr3 133398143 133398573 -94126005 + L1M4 LINE L1 3003 3428 -2954 309 373 153 32 chr3 133398619 133399051 -94125527 - L1MEc LINE L1 -5585 620 137 366 327 160 6 chr3 133399093 133399249 -94125329 - MER5A DNA MER1_type -1 188 9 1222 211 52 81 chr3 133399856 133400264 -94124314 - MSTD LTR MaLR 0 396 1 254 222 42 14 chr3 133400628 133400700 -94123878 + L2 LINE L2 2972 3045 -227 218 354 12 0 chr3 133400838 133400920 -94123658 + L2 LINE L2 3186 3268 -4 222 241 0 19 chr3 133401106 133401160 -94123418 + GA-rich Low_complexity Low_complexity 2 54 0 195 42 0 0 chr3 133401892 133401916 -94122662 + (CA)n Simple_repeat Simple_repeat 1 24 0 235 250 114 29 chr3 133402519 133402659 -94121919 - L2 LINE L2 -1 3312 3161 6747 198 18 5 chr3 133403249 133405658 -94118920 - L1PA16 LINE L1 -4 6162 3728 325 331 99 11 chr3 133406920 133407158 -94117420 + MLT1K LTR MaLR 78 380 -208 2461 268 53 19 chr3 133407588 133408489 -94116089 + L1M4 LINE L1 4333 5264 -1118 345 141 154 0 chr3 133408539 133408617 -94115961 + L1MA5 LINE L1 6207 6296 -4 22 70 0 0 chr3 133408620 133408663 -94115915 + AT_rich Low_complexity Low_complexity 1 43 0 449 246 66 24 chr3 133408704 133408915 -94115663 + L1M4 LINE L1 5246 5465 -917 342 114 89 25 chr3 133409662 133409741 -94114837 - L1MA10 LINE L1 -2 6332 6249 3499 144 53 14 chr3 133409786 133410486 -94114092 - Tigger3(Golem) DNA MER2_type -25 3004 2278 293 193 0 18 chr3 133410478 133410535 -94114043 - Tigger3(Golem) DNA MER2_type -2922 107 52 * 4787 46 5 2 chr3 133410536 133411126 -94113452 + L1PA5 LINE L1 5563 6154 0 637 179 0 9 chr3 133411169 133411281 -94113297 + L1M2 LINE L1 1 111 -6738 2131 94 16 22 chr3 133411314 133411632 -94112946 + THE1C LTR MaLR 1 316 -59 252 22 43 22 chr3 133411636 133411682 -94112896 + (CAAAA)n Simple_repeat Simple_repeat 2 48 0 431 103 0 29 chr3 133411683 133411751 -94112827 - Tigger3(Golem) DNA MER2_type -686 2343 2278 * 437 250 29 10 chr3 133411743 133411847 -94112731 - Tigger3(Golem) DNA MER2_type -2922 107 2 293 172 47 0 chr3 133411856 133411920 -94112658 - L1MA10 LINE L1 -97 7656 7590 604 206 23 23 chr3 133411932 133412063 -94112515 + MER8 DNA MER2_type 49 179 -60 371 188 0 0 chr3 133412038 133412102 -94112476 + MER2 DNA MER2_type 282 345 0 * 10861 224 61 44 chr3 133412103 133412612 -94111966 - L1MA10 LINE L1 -526 7205 6706 3125 61 2 2 chr3 133412612 133413019 -94111559 - L1PA4 LINE L1 -3 6152 5746 10861 224 61 44 chr3 133413019 133414765 -94109813 - L1MA10 LINE L1 -1025 6706 4992 1010 64 50 0 chr3 133414765 133414906 -94109672 - L1PA5 LINE L1 -3 6151 6004 10861 224 61 44 chr3 133414906 133416131 -94108447 - L1MA10 LINE L1 -2739 4992 3790 2109 118 3 0 chr3 133416131 133416418 -94108160 - AluSc SINE Alu -21 288 1 10861 224 61 44 chr3 133416418 133417985 -94106593 - L1MA10 LINE L1 -3941 3790 2078 627 268 19 15 chr3 133417986 133418191 -94106387 - L1MA10 LINE L1 -6823 666 461 3853 161 23 16 chr3 133418294 133418977 -94105601 + MER50 LTR ERV1 17 704 -30 192 387 33 41 chr3 133419002 133419245 -94105333 + L2 LINE L2 2805 3045 -227 22 0 0 0 chr3 133419370 133419392 -94105186 + AT_rich Low_complexity Low_complexity 1 22 0 191 379 0 0 chr3 133419448 133419506 -94105072 + L2 LINE L2 3154 3211 -61 2197 121 0 0 chr3 133419693 133419991 -94104587 - AluY SINE Alu -13 298 1 523 327 114 35 chr3 133421462 133421508 -94103070 + LTR67 LTR ERVL 132 173 -384 333 118 0 0 chr3 133421508 133421559 -94103019 + (TG)n Simple_repeat Simple_repeat 2 52 0 523 327 114 35 chr3 133421559 133421907 -94102671 + LTR67 LTR ERVL 173 557 0 1009 282 54 75 chr3 133422435 133422900 -94101678 - LTR40a LTR ERVL -62 457 3 226 285 150 20 chr3 133423110 133423356 -94101222 + L1MEd LINE L1 974 1251 -4868 2124 134 3 3 chr3 133423711 133424018 -94100560 + AluSx SINE Alu 2 308 -4 184 316 92 13 chr3 133424172 133424248 -94100330 + L2 LINE L2 3196 3277 -36 2416 225 34 24 chr3 133424317 133424956 -94099622 - L1MC3 LINE L1 -9 7776 7131 219 211 0 0 chr3 133425224 133425262 -94099316 + polypyrimidine Low_complexity Low_complexity 3 40 0 342 123 0 0 chr3 133425264 133425321 -94099257 + (TCCC)n Simple_repeat Simple_repeat 4 60 0 427 264 66 85 chr3 133425514 133425546 -94099032 + MIR SINE MIR 2 33 -229 2161 59 15 0 chr3 133425546 133425819 -94098759 + AluY SINE Alu 1 277 -34 427 264 66 85 chr3 133425819 133425998 -94098580 + MIR SINE MIR 33 209 -53 614 311 109 45 chr3 133426108 133426623 -94097955 - L1MC/D LINE L1 -1996 5812 5265 40 59 0 0 chr3 133426644 133426712 -94097866 + AT_rich Low_complexity Low_complexity 1 68 0 561 301 27 0 chr3 133426905 133427088 -94097490 - MER5A DNA MER1_type 0 189 2 281 275 221 23 chr3 133427266 133427397 -94097181 + L3 LINE CR1 1363 1519 -58 342 0 0 0 chr3 133430153 133430191 -94094387 + (CA)n Simple_repeat Simple_repeat 2 39 0 2772 179 20 13 chr3 133430191 133431196 -94093382 - L1M2 LINE L1 -517 5783 4773 843 298 28 41 chr3 133431202 133431582 -94092996 - L1M2a LINE L1 -6764 445 17 605 292 65 19 chr3 133431562 133431994 -94092584 - L1M4c LINE L1 -3903 2481 2030 * 1327 255 18 28 chr3 133432542 133433037 -94091541 - L1MC4 LINE L1 -415 7627 7086 588 242 96 61 chr3 133433159 133433522 -94091056 + L1M4 LINE L1 2435 2810 -3336 315 251 121 5 chr3 133433586 133433785 -94090793 + L1M4 LINE L1 3022 3243 -2903 23 54 0 0 chr3 133433857 133433894 -94090684 + AT_rich Low_complexity Low_complexity 1 37 0 43 20 0 0 chr3 133433946 133433996 -94090582 + AT_rich Low_complexity Low_complexity 1 50 0 266 215 13 0 chr3 133434028 133434107 -94090471 + (CATA)n Simple_repeat Simple_repeat 3 82 0 8207 92 12 15 chr3 133484177 133486189 -94038389 - L1PA7 LINE L1 -22 6132 4131 9019 101 3 2 chr3 133486189 133487489 -94037089 + L1P3 LINE L1 526 1806 -4645 2474 56 7 3 chr3 133487489 133487794 -94036784 + AluY SINE Alu 1 306 -5 23 0 0 0 chr3 133488027 133488050 -94036528 + AT_rich Low_complexity Low_complexity 1 23 0 33 73 0 0 chr3 133488868 133488936 -94035642 + AT_rich Low_complexity Low_complexity 1 68 0 1550 137 29 67 chr3 133489213 133489528 -94035050 + THE1B LTR MaLR 62 364 0 1625 192 94 21 chr3 133489528 133490013 -94034565 + L1MB7 LINE L1 5623 6167 -13 320 257 18 9 chr3 133490020 133490133 -94034445 + HAL1 LINE L1 990 1103 -1404 351 261 43 72 chr3 133490295 133490337 -94034241 - MER112 DNA MER1_type -6 254 212 1392 228 43 14 chr3 133490337 133490688 -94033890 + MLT1A1 LTR MaLR 1 361 -4 351 261 43 72 chr3 133490688 133490783 -94033795 - MER112 DNA MER1_type -48 212 121 396 372 39 36 chr3 133491046 133491355 -94033223 + HAL1 LINE L1 1512 1821 -686 299 282 0 0 chr3 133492181 133492266 -94032312 - L1MC4 LINE L1 -1451 6591 6507 509 321 52 38 chr3 133492830 133493275 -94031303 + L1ME3A LINE L1 5435 5885 -277 22 70 0 0 chr3 133493348 133493391 -94031187 + AT_rich Low_complexity Low_complexity 1 43 0 27 0 0 0 chr3 133493467 133493494 -94031084 + AT_rich Low_complexity Low_complexity 1 27 0 679 331 86 18 chr3 133493683 133494228 -94030350 - L2 LINE L2 -67 3246 2667 2142 246 31 18 chr3 133494433 133495111 -94029467 - L1M1 LINE L1 -4232 3333 2647 1116 294 26 22 chr3 133495121 133495576 -94029002 - L1M1 LINE L1 -5213 2352 1896 865 307 32 55 chr3 133495585 133496054 -94028524 - L1M1 LINE L1 -5823 1673 1216 25 65 0 0 chr3 133496159 133496205 -94028373 + AT_rich Low_complexity Low_complexity 1 46 0 529 311 26 35 chr3 133496338 133496566 -94028012 - MIR SINE MIR -16 246 21 211 200 0 0 chr3 133497760 133497805 -94026773 + GA-rich Low_complexity Low_complexity 2 46 0 626 239 43 16 chr3 133497929 133498113 -94026465 + MIR SINE MIR 74 262 0 4279 128 52 41 chr3 133498623 133500024 -94024554 + pTR5 LTR ERV1 741 2438 0 344 265 215 53 chr3 133500123 133500299 -94024279 - MIR SINE MIR -31 231 27 332 365 34 11 chr3 133500411 133500589 -94023989 + L2 LINE L2 3118 3299 -14 329 301 75 0 chr3 133500655 133500748 -94023830 + L2 LINE L2 3173 3272 0 789 147 85 57 chr3 133501160 133501337 -94023241 - MER5A DNA MER1_type -4 185 4 497 272 184 7 chr3 133501366 133501513 -94023065 + MER5B DNA MER1_type 6 178 0 361 289 178 7 chr3 133501575 133501727 -94022851 + MER5A DNA MER1_type 6 183 -6 320 328 47 23 chr3 133502752 133502880 -94021698 - MIR SINE MIR -71 191 61 244 308 15 30 chr3 133503108 133503241 -94021337 - MER5B DNA MER1_type 0 178 48 1783 194 40 35 chr3 133503245 133503617 -94020961 - MLT1A2 LTR MaLR 0 374 1 235 286 102 31 chr3 133503959 133504057 -94020521 - L3b LINE CR1 -151 1432 1328 420 220 127 8 chr3 133504477 133504595 -94019983 - MIR SINE MIR -2 260 129 240 179 0 0 chr3 133504595 133504634 -94019944 - L1 LINE L1 -2596 3550 3512 320 247 0 0 chr3 133504634 133504711 -94019867 - MIR SINE MIR -121 141 65 257 224 17 0 chr3 133507982 133508040 -94016538 - L2 LINE L2 -4 3268 3210 258 370 131 34 chr3 133508681 133509148 -94015430 + L2 LINE L2 2231 2742 -572 289 321 38 63 chr3 133509624 133509806 -94014772 - MER5A DNA MER1_type 0 189 1 234 0 0 0 chr3 133511043 133511069 -94013509 + (A)n Simple_repeat Simple_repeat 1 26 0 241 318 68 0 chr3 133512474 133512562 -94012016 - L2 LINE L2 0 3313 3220 791 226 0 0 chr3 133512576 133512722 -94011856 + FRAM SINE Alu 1 146 -30 186 274 39 0 chr3 133512735 133512786 -94011792 - L2 LINE L2 -86 3227 3175 1250 179 40 71 chr3 133512848 133513145 -94011433 + AluJb SINE Alu 11 298 -14 258 371 68 77 chr3 133513190 133513632 -94010946 + L2 LINE L2 2827 3264 -8 3068 37 19 0 chr3 133514018 133514392 -94010186 + L1PA5 LINE L1 5766 6146 -8 269 317 0 20 chr3 133514410 133514511 -94010067 + GA-rich Low_complexity Low_complexity 4 102 0 239 299 0 0 chr3 133515306 133515373 -94009205 + MIR SINE MIR 196 262 0 269 272 122 7 chr3 133515401 133515548 -94009030 - L1ME LINE L1 -368 5794 5631 1194 238 20 33 chr3 133515682 133515981 -94008597 + LTR40a LTR ERVL 1 295 -224 375 315 55 38 chr3 133515981 133516432 -94008146 - L1ME LINE L1 -1806 4340 3882 304 348 88 14 chr3 133516735 133517031 -94007547 - L1 LINE L1 -2740 3406 3089 2258 254 74 25 chr3 133517081 133518645 -94005933 - L1ME1 LINE L1 -47 6188 4539 417 244 0 0 chr3 133518857 133518935 -94005643 - Tigger5 DNA MER2_type -2244 79 2 1423 266 78 30 chr3 133518935 133519657 -94004921 - L1ME1 LINE L1 -1675 4540 3785 6533 229 17 11 chr3 133519669 133521281 -94003297 - L1 LINE L1 -1016 5130 3510 243 302 52 35 chr3 133521380 133521552 -94003026 - L1ME1 LINE L1 -4875 1340 1166 1562 266 115 58 chr3 133521572 133522614 -94001964 - L1ME1 LINE L1 -5260 1136 35 768 321 108 13 chr3 133522656 133523192 -94001386 - L1 LINE L1 -3128 3018 2432 1720 213 6 3 chr3 133523467 133523814 -94000764 + MER7A DNA MER2_type 1 346 0 24 32 0 0 chr3 133524272 133524303 -94000275 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 133524871 133524893 -93999685 + AT_rich Low_complexity Low_complexity 1 22 0 1363 164 14 58 chr3 133525865 133526140 -93998438 + MER2 DNA MER2_type 3 265 -80 569 333 19 36 chr3 133526307 133526616 -93997962 + ERVL LTR ERVL 4099 4402 -1362 460 82 0 0 chr3 133527024 133527085 -93997493 - L1PA6 LINE L1 -265 5889 5829 668 196 6 0 chr3 133527085 133527241 -93997337 + L1PA4 LINE L1 5997 6155 0 283 308 53 15 chr3 133527244 133527377 -93997201 + ERVL LTR ERVL 4810 4947 -707 24 32 0 0 chr3 133527837 133527868 -93996710 + AT_rich Low_complexity Low_complexity 1 31 0 476 126 0 11 chr3 133528005 133528092 -93996486 - L1MA8 LINE L1 -1 6290 6205 682 203 46 124 chr3 133528092 133528398 -93996180 - L1M3e LINE L1 -6452 578 297 634 186 0 105 chr3 133528404 133528576 -93996002 - L1M3e LINE L1 -6876 154 1 1829 148 40 35 chr3 133529097 133529470 -93995108 - THE1C LTR MaLR 0 375 1 9042 147 14 35 chr3 133529474 133531083 -93993495 - THE1C-int LTR MaLR -4 1576 3 1773 161 164 16 chr3 133531085 133531458 -93993120 - MSTA LTR MaLR 0 428 1 305 228 18 0 chr3 133531531 133531588 -93992990 - MER77 LTR ERV1 -255 350 293 229 250 114 34 chr3 133531788 133531876 -93992702 - MER77 LTR ERV1 -458 147 53 262 276 204 41 chr3 133532704 133532802 -93991776 - MIR SINE MIR -78 130 17 254 303 59 85 chr3 133533549 133533751 -93990827 + L2 LINE L2 2783 2984 -288 1860 181 52 65 chr3 133533751 133534209 -93990369 - LTR47A LTR ERVL 0 452 1 254 303 59 85 chr3 133534209 133534260 -93990318 + L2 LINE L2 2984 3035 -237 185 0 40 0 chr3 133534318 133534343 -93990235 + (TGAA)n Simple_repeat Simple_repeat 2 27 0 2523 64 0 0 chr3 133534915 133535226 -93989352 + AluY SINE Alu 1 311 0 239 152 0 45 chr3 133535862 133535928 -93988650 + A-rich Low_complexity Low_complexity 4 66 0 276 378 64 6 chr3 133536691 133536847 -93987731 - L2 LINE L2 -556 2758 2594 256 278 148 68 chr3 133536923 133537322 -93987256 + L1 LINE L1 3812 4242 -1904 4554 139 25 38 chr3 133538165 133538420 -93986158 + L1 LINE L1 4227 4484 -1662 1322 118 59 14 chr3 133538420 133538640 -93985938 - MER30 DNA MER1_type 0 230 1 4554 139 25 38 chr3 133538640 133539305 -93985273 + L1 LINE L1 4484 5135 -1011 236 224 0 0 chr3 133539305 133539354 -93985224 - Alu SINE Alu -219 83 35 303 214 12 48 chr3 133539364 133539448 -93985130 - L1M4 LINE L1 -1332 4814 4734 1072 193 5 58 chr3 133539451 133539674 -93984904 + AluJo SINE Alu 82 292 -20 1436 212 62 70 chr3 133539688 133540136 -93984442 + L1ME LINE L1 4817 5267 -864 2421 88 0 0 chr3 133540136 133540433 -93984145 - AluY SINE Alu -14 297 1 1436 212 62 70 chr3 133540433 133540975 -93983603 + L1ME LINE L1 5267 5806 -325 660 305 43 50 chr3 133541650 133542253 -93982325 + L1MC4a LINE L1 5311 5909 -1899 24 53 0 0 chr3 133542445 133542483 -93982095 + AT_rich Low_complexity Low_complexity 1 38 0 287 373 33 24 chr3 133544437 133544649 -93979929 - L2 LINE L2 -218 3054 2841 333 330 82 19 chr3 133544982 133545252 -93979326 - L2 LINE L2 -888 2426 2140 202 175 0 88 chr3 133547638 133547695 -93976883 - MIR SINE MIR -13 249 198 318 307 142 10 chr3 133548280 133548485 -93976093 - L1M4 LINE L1 -2911 4195 3964 500 290 72 50 chr3 133548553 133548915 -93975663 - MLT1J LTR MaLR -41 470 101 24 32 0 0 chr3 133549509 133549540 -93975038 + AT_rich Low_complexity Low_complexity 1 31 0 476 126 0 11 chr3 133549677 133549764 -93974814 - L1MA8 LINE L1 -1 6290 6205 682 203 46 124 chr3 133549764 133550070 -93974508 - L1M4 LINE L1 -6452 578 297 659 180 0 105 chr3 133550076 133550248 -93974330 - L1M4 LINE L1 -6876 154 1 1899 142 40 35 chr3 133550769 133551142 -93973436 - THE1C LTR MaLR 0 375 1 3333 109 14 10 chr3 133551146 133551639 -93972939 - THE1C-int LTR MaLR -4 1576 1082 669 146 81 32 chr3 133551749 133551934 -93972644 - AluY SINE Alu -115 196 3 185 0 40 0 chr3 133552499 133552524 -93972054 + (TTCA)n Simple_repeat Simple_repeat 2 27 0 239 300 94 85 chr3 133552582 133552633 -93971945 - L2 LINE L2 -237 3035 2986 1860 181 52 65 chr3 133552633 133553091 -93971487 + LTR47A LTR ERVL 1 452 0 239 300 94 85 chr3 133553091 133553293 -93971285 - L2 LINE L2 -286 2986 2783 262 276 204 41 chr3 133554037 133554135 -93970443 + MIR SINE MIR 17 130 -78 229 250 114 34 chr3 133554963 133555051 -93969527 + MER77 LTR ERV1 53 147 -458 305 228 18 0 chr3 133555251 133555308 -93969270 + MER77 LTR ERV1 293 350 -255 1773 161 164 16 chr3 133555381 133555754 -93968824 + MSTA LTR MaLR 1 428 0 8884 153 15 38 chr3 133555756 133557357 -93967221 + MSTA-int LTR MaLR 3 1567 -13 1336 181 211 12 chr3 133557432 133557774 -93966804 + MSTA LTR MaLR 19 428 0 251 132 0 0 chr3 133557849 133557887 -93966691 - L1 LINE L1 -1698 5469 5432 2713 260 75 30 chr3 133557887 133559972 -93964606 - L1 LINE L1 -3679 3488 1592 15930 95 11 12 chr3 133560159 133562374 -93962204 - HERVL LTR ERVL -35 5619 3408 755 170 26 20 chr3 133562491 133562644 -93961934 + THE1-int LTR MaLR 1166 1319 -261 * 6176 131 5 49 chr3 133562630 133563669 -93960909 - THE1C-int LTR MaLR -586 994 2 1839 157 35 35 chr3 133563670 133564045 -93960533 - THE1C LTR MaLR 0 375 1 326 330 45 62 chr3 133564045 133564221 -93960357 + MLT1I LTR MaLR 101 273 -136 260 253 11 46 chr3 133564283 133564370 -93960208 + MLT1I LTR MaLR 309 392 -17 320 124 22 34 chr3 133564845 133564934 -93959644 + (TCTA)n Simple_repeat Simple_repeat 4 91 0 348 249 35 23 chr3 133564958 133565131 -93959447 - L1MC5 LINE L1 -178 7783 7609 564 79 0 0 chr3 133565154 133565230 -93959348 - MADE1 DNA Mariner -1 79 4 5126 189 23 20 chr3 133565352 133566992 -93957586 - L1MA9 LINE L1 0 7731 6085 950 70 78 0 chr3 133566992 133567121 -93957457 - MER85 DNA T2_type 0 139 1 5126 189 23 20 chr3 133567121 133567570 -93957008 - L1MA9 LINE L1 -1646 6085 5639 1246 179 77 13 chr3 133567580 133567814 -93956764 + AluJo SINE Alu 11 259 -53 360 111 0 0 chr3 133567817 133567871 -93956707 + (TG)n Simple_repeat Simple_repeat 2 55 0 3778 203 58 20 chr3 133567873 133569014 -93955564 - L1M4 LINE L1 -1913 4935 3784 3256 244 65 22 chr3 133569036 133570596 -93953982 - L1MA9 LINE L1 -2912 4653 3022 1758 259 30 26 chr3 133570614 133571279 -93953299 - L1M4 LINE L1 -4283 2566 1899 8289 94 15 22 chr3 133571291 133573324 -93951254 - L1PA7 LINE L1 0 6154 4131 14862 130 11 68 chr3 133573368 133574623 -93949955 + L1P LINE L1 387 1712 -4434 2653 35 0 6 chr3 133574623 133574936 -93949642 + AluY SINE Alu 1 311 0 14862 130 11 68 chr3 133574936 133576527 -93948051 + L1P LINE L1 1712 3071 -3075 5639 189 11 22 chr3 133576555 133577533 -93947045 - L1 LINE L1 -781 6784 5796 1959 144 0 7 chr3 133577533 133577832 -93946746 - AluSx SINE Alu -13 299 3 2481 63 7 0 chr3 133577842 133578143 -93946435 - AluY SINE Alu -6 305 3 5639 189 11 22 chr3 133578143 133578394 -93946184 - L1 LINE L1 -1778 5787 5558 1297 215 17 54 chr3 133578393 133578750 -93945828 - L1 LINE L1 -2530 5035 4693 * 7612 28 0 0 chr3 133578750 133580089 -93944489 - L1PA3 LINE L1 -3 6152 4813 1297 215 17 54 chr3 133580089 133580140 -93944438 - L1 LINE L1 -2872 4693 4642 2487 81 0 0 chr3 133580141 133580451 -93944127 - AluY SINE Alu -1 310 1 4239 134 13 12 chr3 133580469 133581237 -93943341 - L1 LINE L1 -4243 3322 2554 7725 209 25 8 chr3 133581247 133582750 -93941828 - L1 LINE L1 -6015 1550 23 1650 305 65 62 chr3 133582747 133584138 -93940440 - L1M3a LINE L1 -4856 1099 15 * 369 261 92 7 chr3 133584184 133584337 -93940241 - L1MC5 LINE L1 -492 7469 7304 991 254 122 65 chr3 133584489 133585071 -93939507 - L1MC5 LINE L1 -735 7226 6612 1979 211 10 5 chr3 133585247 133585635 -93938943 + MER74C LTR ERVL 70 459 -1 388 291 80 64 chr3 133585805 133586245 -93938333 - L1MC4a LINE L1 -1551 6257 5811 5384 208 60 11 chr3 133586247 133587493 -93937085 - L1MC3 LINE L1 -6 7779 6473 1238 229 123 26 chr3 133587525 133587949 -93936629 - L1MC3 LINE L1 -1414 6371 5907 2180 178 36 10 chr3 133587949 133588364 -93936214 - MSTB LTR MaLR 0 426 1 276 125 21 0 chr3 133588365 133588413 -93936165 - MSTB-int LTR MaLR 0 1651 1603 * 579 248 21 7 chr3 133588399 133588544 -93936034 - L1MC3 LINE L1 -2233 5762 5616 1112 219 4 4 chr3 133588544 133588786 -93935792 - MER33 DNA MER1_type -73 251 10 1824 183 24 3 chr3 133589306 133589678 -93934900 - L1MA3 LINE L1 0 6305 5926 22 35 0 0 chr3 133589853 133589882 -93934696 + AT_rich Low_complexity Low_complexity 1 29 0 835 284 122 67 chr3 133591373 133592441 -93932137 - HAL1 LINE L1 0 2507 1382 21 57 0 0 chr3 133592880 133592915 -93931663 + AT_rich Low_complexity Low_complexity 1 35 0 246 304 12 94 chr3 133593624 133593795 -93930783 - LTR16A1 LTR ERVL -2 455 299 492 307 48 35 chr3 133594173 133594750 -93929828 + L1MEc LINE L1 1232 1816 -4580 867 180 167 68 chr3 133594987 133595243 -93929335 + MER33 DNA MER1_type 2 292 -2293 1419 180 118 7 chr3 133595243 133595515 -93929063 - AluJb SINE Alu 0 302 1 867 180 167 68 chr3 133595515 133595552 -93929026 + MER33 DNA MER1_type 292 324 0 21 36 0 0 chr3 133595585 133595613 -93928965 + AT_rich Low_complexity Low_complexity 1 28 0 1023 285 95 34 chr3 133595706 133596971 -93927607 + L1MEc LINE L1 2179 3520 -2695 432 257 70 19 chr3 133597190 133597404 -93927174 + L1MEc LINE L1 4500 4724 -1491 425 298 156 0 chr3 133597407 133597548 -93927030 - LTR16A LTR ERVL -2 448 286 298 316 44 15 chr3 133597624 133597760 -93926818 - HERVL-A1 LTR ERVL -707 4947 4808 1327 31 0 0 chr3 133597761 133597920 -93926658 - L1PA4 LINE L1 0 6155 5997 528 17 0 0 chr3 133597920 133597979 -93926599 + L1PA4 LINE L1 5831 5889 -266 26963 89 11 2 chr3 133598238 133601846 -93922732 - HERVL-A1 LTR ERVL -2013 3641 1 328 146 0 0 chr3 133601846 133601901 -93922677 - MLT2A1 LTR ERVL 0 444 390 216 0 0 0 chr3 133601922 133601946 -93922632 + (CA)n Simple_repeat Simple_repeat 2 25 0 2945 109 5 5 chr3 133601946 133602359 -93922219 - MLT2A1 LTR ERVL -31 413 1 5146 264 46 14 chr3 133602375 133602600 -93921978 - L1M4c LINE L1 -874 6083 5867 2234 68 0 11 chr3 133602600 133602878 -93921700 - AluY SINE Alu -16 295 21 5146 264 46 14 chr3 133602878 133604125 -93920453 - L1M4c LINE L1 -1090 5867 4425 2192 154 8 6 chr3 133604125 133604488 -93920090 - THE1B LTR MaLR 0 364 1 5146 264 46 14 chr3 133604488 133605161 -93919417 - L1M4c LINE L1 -2532 4425 3775 1352 254 18 22 chr3 133605172 133605355 -93919223 - L1M4c LINE L1 -3243 3714 3532 1846 148 77 14 chr3 133605355 133605553 -93919025 - THE1C LTR MaLR 0 375 191 1904 159 0 3 chr3 133605553 133605854 -93918724 + AluSx SINE Alu 1 300 -12 1846 148 77 14 chr3 133605854 133606007 -93918571 - THE1C LTR MaLR -184 191 2 1352 254 18 22 chr3 133606007 133606276 -93918302 - L1M4c LINE L1 -3425 3532 3264 1620 187 79 23 chr3 133606276 133606629 -93917949 - THE1C LTR MaLR 0 375 3 412 242 65 96 chr3 133606631 133607053 -93917525 - L1M4c LINE L1 -3691 3266 2856 33 43 0 0 chr3 133607078 133607125 -93917453 + AT_rich Low_complexity Low_complexity 1 47 0 308 304 6 89 chr3 133607136 133607294 -93917284 - L1M4c LINE L1 -4219 2740 2596 28 48 0 0 chr3 133607421 133607463 -93917115 + AT_rich Low_complexity Low_complexity 1 42 0 769 270 58 26 chr3 133607492 133608082 -93916496 - L1M4c LINE L1 -4451 2687 1979 2517 302 29 47 chr3 133608169 133609122 -93915456 - L1M4c LINE L1 -5911 948 13 26 50 0 0 chr3 133609712 133609752 -93914826 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr3 133610287 133610315 -93914263 + AT_rich Low_complexity Low_complexity 1 28 0 248 200 19 71 chr3 133610654 133610780 -93913798 - L1MCa LINE L1 -1337 6985 2006 * 2922 132 13 61 chr3 133610766 133611321 -93913257 - L1P5 LINE L1 -365 5791 5264 291 20 78 0 chr3 133611469 133611520 -93913058 + GA-rich Low_complexity Low_complexity 2 56 0 500 250 49 157 chr3 133613287 133613671 -93910907 - L1ME3A LINE L1 -9 6161 5836 1361 163 101 46 chr3 133613671 133613997 -93910581 - MER2 DNA MER2_type 0 344 1 500 250 49 157 chr3 133613997 133614084 -93910494 - L1ME3A LINE L1 -334 5836 5741 200 271 0 29 chr3 133615079 133615149 -93909429 + CT-rich Low_complexity Low_complexity 3 70 0 1412 231 56 108 chr3 133615363 133615939 -93908639 + MER77 LTR ERV1 54 599 -6 293 323 16 32 chr3 133617351 133617475 -93907103 + L2 LINE L2 2186 2307 -1007 215 353 59 17 chr3 133617718 133617837 -93906741 + L2 LINE L2 2533 2656 -658 234 221 150 79 chr3 133617918 133618118 -93906460 - MIR3 SINE MIR -61 201 2 22 35 0 0 chr3 133618897 133618926 -93905652 + AT_rich Low_complexity Low_complexity 1 29 0 212 196 0 18 chr3 133620414 133620470 -93904108 + GA-rich Low_complexity Low_complexity 1 55 0 207 197 0 49 chr3 133620494 133620555 -93904023 + GA-rich Low_complexity Low_complexity 2 59 0 432 261 104 76 chr3 133620557 133620705 -93903873 - MIR SINE MIR -16 246 104 2704 80 6 0 chr3 133620705 133621054 -93903524 + THE1A LTR MaLR 5 355 0 11843 88 1 2 chr3 133621054 133622636 -93901942 + THE1A-int LTR MaLR 1 1580 0 2582 107 3 0 chr3 133622636 133622990 -93901588 + THE1A LTR MaLR 1 355 0 432 261 104 76 chr3 133622990 133623050 -93901528 - MIR SINE MIR -157 105 30 993 304 19 13 chr3 133623746 133624121 -93900457 - L1MC4a LINE L1 -1926 5882 5506 515 308 22 0 chr3 133624146 133624331 -93900247 + L1MC4 LINE L1 7286 7474 -568 * 1439 267 82 59 chr3 133624326 133625115 -93899463 + L1MDa LINE L1 112 1079 -5461 804 184 0 0 chr3 133625115 133625240 -93899338 + FLAM_C SINE Alu 1 125 -18 183 156 0 0 chr3 133625244 133625276 -93899302 + (TA)n Simple_repeat Simple_repeat 1 32 0 5167 194 41 18 chr3 133625278 133626545 -93898033 + L1MDa LINE L1 1071 2366 -4174 1503 188 24 106 chr3 133626573 133626987 -93897591 + MSTD LTR MaLR 13 392 -4 3343 259 71 33 chr3 133626995 133627935 -93896643 + L1MDa LINE L1 2381 3284 -3256 1953 196 18 8 chr3 133627935 133628317 -93896261 + MLT1B LTR MaLR 2 387 -3 3343 259 71 33 chr3 133628317 133629289 -93895289 + L1MDa LINE L1 3284 4372 -2168 2497 56 0 0 chr3 133629289 133629591 -93894987 - AluY SINE Alu -9 302 1 3343 259 71 33 chr3 133629591 133629647 -93894931 + L1MDa LINE L1 4372 4424 -2116 1415 96 8 2 chr3 133629667 133629882 -93894696 - L1MA1 LINE L1 0 6291 6074 3546 242 77 20 chr3 133629883 133631402 -93893176 + L1MDa LINE L1 4419 6025 -611 285 29 0 0 chr3 133631957 133631991 -93892587 + (T)n Simple_repeat Simple_repeat 1 34 0 23 33 0 0 chr3 133633884 133633914 -93890664 + AT_rich Low_complexity Low_complexity 1 30 0 205 191 75 0 chr3 133633920 133634014 -93890564 + (TA)n Simple_repeat Simple_repeat 1 101 0 23 0 0 0 chr3 133634831 133634854 -93889724 + AT_rich Low_complexity Low_complexity 1 23 0 2534 52 7 0 chr3 133635087 133635393 -93889185 - AluY SINE Alu -2 309 2 335 271 69 76 chr3 133635626 133636055 -93888523 + HAL1b LINE L1 6 386 -962 349 376 41 9 chr3 133636279 133636500 -93888078 + HAL1b LINE L1 681 908 -440 366 276 94 8 chr3 133637281 133637408 -93887170 + L1MC4a LINE L1 6615 6752 -1056 751 192 0 0 chr3 133637442 133637567 -93887011 - AluJb SINE Alu -187 125 1 1908 206 81 107 chr3 133637591 133638558 -93886020 + L1MC5 LINE L1 6796 7730 -231 1884 172 36 3 chr3 133638558 133638895 -93885683 + MER7A DNA MER2_type 1 346 0 1908 206 81 107 chr3 133638895 133639087 -93885491 + L1MC5 LINE L1 7730 7925 -36 433 304 92 32 chr3 133639296 133639546 -93885032 + MLT1K LTR MaLR 175 439 -149 28 79 0 0 chr3 133639605 133639668 -93884910 + AT_rich Low_complexity Low_complexity 1 63 0 1208 345 114 22 chr3 133639678 133640690 -93883888 + L3 LINE CR1 450 1554 -23 334 296 40 16 chr3 133641360 133641485 -93883093 - L2 LINE L2 -6 3307 3180 300 316 90 42 chr3 133641874 133642086 -93882492 - L2 LINE L2 -596 2718 2497 406 152 0 0 chr3 133642175 133642241 -93882337 - MLT2C1 LTR ERVL 0 397 332 471 319 92 35 chr3 133643126 133643606 -93880972 - L1MEd LINE L1 -4971 1148 642 1887 119 61 4 chr3 133645333 133645611 -93878967 - AluSq SINE Alu -19 294 1 368 291 9 9 chr3 133646402 133646512 -93878066 - L2 LINE L2 -3 3310 3201 4077 223 56 21 chr3 133647083 133647431 -93877147 - L1MB2 LINE L1 -1 6170 5836 342 67 0 0 chr3 133647431 133647476 -93877102 + (TG)n Simple_repeat Simple_repeat 2 46 0 189 0 0 0 chr3 133647475 133647496 -93877082 + (TA)n Simple_repeat Simple_repeat 2 22 0 * 4077 223 56 21 chr3 133647476 133647807 -93876771 - L1MB2 LINE L1 -335 5836 5518 1854 153 49 33 chr3 133647807 133648174 -93876404 + THE1C LTR MaLR 1 373 -2 4077 223 56 21 chr3 133648174 133649359 -93875219 - L1MB2 LINE L1 -653 5518 4256 655 173 93 20 chr3 133649490 133649640 -93874938 - MIR SINE MIR 0 262 102 786 128 121 0 chr3 133649664 133649805 -93874773 + MLT1A1 LTR MaLR 1 158 -207 14271 178 27 5 chr3 133649820 133653656 -93870922 + L1MA3 LINE L1 1187 5213 -2511 297 0 0 0 chr3 133653656 133653689 -93870889 + (TA)n Simple_repeat Simple_repeat 1 33 0 14271 178 27 5 chr3 133653689 133656202 -93868376 + L1MA3 LINE L1 5213 7671 -53 2413 106 27 8 chr3 133656207 133656575 -93868003 - THE1C LTR MaLR 0 375 1 5719 118 4 6 chr3 133656575 133657406 -93867172 - THE1C-int LTR MaLR 0 1580 752 698 128 0 18 chr3 133657406 133657515 -93867063 - THE1C LTR MaLR -267 108 2 987 205 52 5 chr3 133657559 133657769 -93866809 + MLT1A1 LTR MaLR 146 365 0 211 180 0 33 chr3 133658251 133658312 -93866266 + T-rich Low_complexity Low_complexity 5 63 0 1574 293 78 20 chr3 133658845 133659381 -93865197 + Zaphod DNA AcHobo 14 580 -3451 2490 258 34 14 chr3 133659467 133660428 -93864150 + L1MB7 LINE L1 2945 3925 -2221 4381 218 27 10 chr3 133660429 133661364 -93863214 + L1M3f LINE L1 1 951 -4377 * 5494 153 38 14 chr3 133661334 133662548 -93862030 + L1MA4 LINE L1 5242 6479 -3 3452 235 24 26 chr3 133662518 133663747 -93860831 + L1MB7 LINE L1 5104 6336 -30 * 1051 98 0 0 chr3 133664330 133664473 -93860105 + AluSg/x SINE Alu 158 300 -12 361 347 46 11 chr3 133665375 133665660 -93858918 + L1MC4a LINE L1 4730 5024 -1122 1658 193 0 10 chr3 133665758 133666059 -93858519 - AluJb SINE Alu 0 312 15 31 0 0 0 chr3 133666164 133666195 -93858383 + AT_rich Low_complexity Low_complexity 1 31 0 545 239 21 11 chr3 133666197 133666418 -93858160 + L1MC4a LINE L1 5191 5416 -812 1337 177 90 8 chr3 133666427 133666693 -93857885 + AluJb SINE Alu 12 299 -13 2297 230 49 36 chr3 133666693 133666843 -93857735 + L1MC4a LINE L1 5413 5560 -2248 2181 102 0 3 chr3 133666843 133667136 -93857442 - AluSg SINE Alu -17 293 2 2297 230 49 36 chr3 133667136 133667675 -93856903 + L1MC4a LINE L1 5560 6111 -1697 1469 137 6 9 chr3 133667801 133668143 -93856435 - L1PA15 LINE L1 -15 6150 5644 660 231 2 2 chr3 133668141 133668338 -93856240 - L1M LINE L1 -811 5369 5173 * 4554 176 13 29 chr3 133668335 133668658 -93855920 - L1P4 LINE L1 -521 5644 5317 2152 115 23 0 chr3 133668658 133668962 -93855616 - AluSx SINE Alu -1 311 1 4554 176 13 29 chr3 133668962 133669916 -93854662 - L1P4 LINE L1 -848 5317 4377 366 306 60 30 chr3 133669969 133670168 -93854410 - HAL1 LINE L1 -2115 392 188 637 251 12 12 chr3 133670461 133670628 -93853950 + MIR SINE MIR 96 262 0 4146 36 2 0 chr3 133670966 133671465 -93853113 + L1PA3 LINE L1 5654 6153 -2 3953 267 28 25 chr3 133671632 133672756 -93851822 + MER69 DNA AcHobo 1 1127 -1399 492 227 62 23 chr3 133672753 133672929 -93851649 + MER69 DNA AcHobo 2279 2461 -65 * 216 291 47 12 chr3 133672932 133673018 -93851560 + MIR SINE MIR 157 245 -17 618 37 0 0 chr3 133675310 133675392 -93849186 + L1PA2 LINE L1 6074 6155 0 25 51 0 0 chr3 133675927 133675966 -93848612 + AT_rich Low_complexity Low_complexity 1 39 0 324 127 0 0 chr3 133676565 133676620 -93847958 + (TC)n Simple_repeat Simple_repeat 2 56 0 315 0 0 0 chr3 133677399 133677434 -93847144 + (TG)n Simple_repeat Simple_repeat 2 36 0 26 64 0 0 chr3 133679353 133679400 -93845178 + AT_rich Low_complexity Low_complexity 1 47 0 1409 202 16 0 chr3 133680008 133680266 -93844312 + AluJb SINE Alu 18 279 -33 495 222 10 0 chr3 133680761 133680860 -93843718 + MER69A DNA AcHobo 1 100 -77 21 0 0 0 chr3 133680983 133681004 -93843574 + AT_rich Low_complexity Low_complexity 1 21 0 770 130 30 8 chr3 133681321 133681452 -93843126 + MER54B LTR ERVL 660 793 0 262 125 0 0 chr3 133681452 133681492 -93843086 - MER67A LTR ERV1 -494 49 10 949 208 52 24 chr3 133682286 133682409 -93842169 + MER20 DNA MER1_type 2 135 -84 3309 167 49 64 chr3 133682409 133683206 -93841372 - LTR1 LTR ERV1 0 785 1 949 208 52 24 chr3 133683206 133683294 -93841284 + MER20 DNA MER1_type 135 219 0 2267 112 9 3 chr3 133683303 133683633 -93840945 - THE1A LTR MaLR -23 332 1 270 372 9 9 chr3 133684682 133684795 -93839783 + MER5B DNA MER1_type 61 173 -5 209 338 28 0 chr3 133684924 133684995 -93839583 - MIR SINE MIR -139 123 51 452 276 145 18 chr3 133685436 133685657 -93838921 + MIR SINE MIR 13 261 -1 435 274 80 35 chr3 133685705 133685756 -93838822 + MER112 DNA MER1_type 18 65 -195 2494 108 8 16 chr3 133685756 133686134 -93838444 - THE1C LTR MaLR 0 375 1 435 274 80 35 chr3 133686134 133686308 -93838270 + MER112 DNA MER1_type 65 253 -7 397 309 16 8 chr3 133686310 133686433 -93838145 + L2 LINE L2 3190 3313 0 450 53 0 0 chr3 133686709 133686766 -93837812 + (TG)n Simple_repeat Simple_repeat 2 58 0 8646 153 19 0 chr3 133686770 133689041 -93835537 - L1PA11 LINE L1 -8 7604 5288 11357 213 19 26 chr3 133689044 133690853 -93833725 - L1PA11 LINE L1 -2700 4884 3065 1733 145 66 41 chr3 133690853 133691219 -93833359 + THE1C LTR MaLR 1 375 0 11357 213 19 26 chr3 133691219 133693516 -93831062 - L1PA11 LINE L1 -4519 3065 1 347 222 11 33 chr3 133694077 133694167 -93830411 + MIR SINE MIR 120 207 -55 187 311 5 100 chr3 133694337 133694527 -93830051 - L2 LINE L2 0 3313 3142 1988 199 84 0 chr3 133694673 133695066 -93829512 - MSTB LTR MaLR 0 426 1 231 292 67 34 chr3 133695090 133695179 -93829399 - L2 LINE L2 -673 2641 2550 22 0 0 0 chr3 133695506 133695528 -93829050 + AT_rich Low_complexity Low_complexity 1 22 0 26484 95 9 5 chr3 133695966 133700640 -93823938 + L1PA7 LINE L1 1465 6153 -1 27 29 0 0 chr3 133700935 133700969 -93823609 + AT_rich Low_complexity Low_complexity 1 34 0 428 293 66 33 chr3 133701189 133701523 -93823055 + L1ME4a LINE L1 5518 5862 -259 352 340 20 0 chr3 133701740 133701840 -93822738 - L2 LINE L2 -16 3256 3155 702 250 29 6 chr3 133701859 133702031 -93822547 + L2 LINE L2 2451 2626 -688 1008 162 70 57 chr3 133702031 133702259 -93822319 + MLT1D LTR MaLR 1 231 -274 2266 173 25 8 chr3 133702296 133702695 -93821883 - MSTB LTR MaLR -20 406 1 1223 207 56 22 chr3 133702695 133702963 -93821615 + MLT1D LTR MaLR 227 503 -2 1103 300 72 56 chr3 133702965 133703505 -93821073 + L2 LINE L2 2622 3183 -130 303 28 0 0 chr3 133703505 133703541 -93821037 + (CA)n Simple_repeat Simple_repeat 1 36 0 1103 300 72 56 chr3 133703541 133703675 -93820903 + L2 LINE L2 3183 3313 0 21 36 0 0 chr3 133703819 133703847 -93820731 + AT_rich Low_complexity Low_complexity 1 28 0 1834 152 11 0 chr3 133704202 133704478 -93820100 - AluSx SINE Alu -33 279 1 1988 173 79 22 chr3 133705124 133705529 -93819049 - MSTA LTR MaLR 0 428 1 206 299 65 19 chr3 133705880 133705987 -93818591 - L2 LINE L2 -412 2902 2791 242 204 29 32 chr3 133706643 133706743 -93817835 + MIR3 SINE MIR 76 207 -1 975 228 101 49 chr3 133707538 133707884 -93816694 - MLT1A1 LTR MaLR -1 364 1 7198 222 40 31 chr3 133707884 133709603 -93814975 - MLT1A1-int LTR MaLR 0 1735 1 952 242 55 58 chr3 133709605 133709969 -93814609 - MLT1A1 LTR MaLR -2 363 1 1620 158 28 21 chr3 133711501 133711786 -93812792 - MLT1B LTR MaLR 0 390 104 393 320 16 0 chr3 133711818 133711943 -93812635 + LTR16C LTR ERVL 354 480 -11 217 333 188 0 chr3 133712731 133712923 -93811655 - MIR SINE MIR -3 259 32 231 273 0 0 chr3 133712935 133712990 -93811588 + MER5B DNA MER1_type 1 55 -123 431 301 22 9 chr3 133713029 133713255 -93811323 + L1ME3 LINE L1 4995 5223 -923 2005 122 4 4 chr3 133713265 133713589 -93810989 - AluSc SINE Alu 0 325 2 2079 235 48 61 chr3 133713621 133714407 -93810171 + L1ME3 LINE L1 5374 6149 -13 308 276 184 31 chr3 133714572 133714735 -93809843 + MIR3 SINE MIR 18 205 -3 185 297 31 31 chr3 133715062 133715126 -93809452 + MIR SINE MIR 16 79 -129 292 336 84 0 chr3 133715128 133715271 -93809307 + MIR3 SINE MIR 54 208 0 1488 178 135 7 chr3 133716209 133716513 -93808065 + MER61A LTR ERV1 1 343 0 4256 115 11 0 chr3 133716588 133717214 -93807364 + MER41B LTR ERV1 3 635 0 195 204 0 0 chr3 133717442 133717486 -93807092 + CT-rich Low_complexity Low_complexity 1 44 0 389 264 0 88 chr3 133718925 133719084 -93805494 - L2 LINE L2 0 3313 3169 776 263 47 55 chr3 133719159 133719539 -93805039 - L1ME4a LINE L1 -206 5915 5539 791 259 77 23 chr3 133719557 133719777 -93804801 - MIR SINE MIR -3 259 28 2293 202 56 6 chr3 133720671 133721157 -93803421 - MER82 DNA MER2_type -6 647 138 1911 213 82 53 chr3 133721157 133721763 -93802815 + LTR48B LTR ERV1 1 624 -20 675 245 0 0 chr3 133721780 133721919 -93802659 - MER82 DNA MER2_type -512 141 3 350 331 57 25 chr3 133722011 133722334 -93802244 - L1ME4a LINE L1 -1675 4471 4124 983 188 46 0 chr3 133722400 133722597 -93801981 - Tigger1 DNA MER2_type 0 2418 2213 893 164 7 13 chr3 133722594 133722746 -93801832 - Tigger1 DNA MER2_type -2267 151 1 * 22 56 0 0 chr3 133723203 133723239 -93801339 + AT_rich Low_complexity Low_complexity 1 36 0 715 363 74 17 chr3 133724127 133724665 -93799913 - L2 LINE L2 -352 2962 2394 318 292 21 0 chr3 133724828 133724924 -93799654 - MIR SINE MIR -88 174 77 510 254 173 15 chr3 133726181 133726378 -93798200 - L2 LINE L2 0 3313 3086 592 294 55 30 chr3 133726566 133726839 -93797739 - L2 LINE L2 -232 3081 2800 537 183 127 66 chr3 133726841 133727054 -93797524 - LTR45 LTR ERV1 0 525 264 1594 126 0 12 chr3 133727311 133727558 -93797020 - AluSg/x SINE Alu 0 312 69 262 83 17 33 chr3 133727564 133727624 -93796954 + (TTTTTG)n Simple_repeat Simple_repeat 2 60 0 507 143 31 31 chr3 133727705 133727803 -93796775 - L2 LINE L2 -520 2794 2697 1102 222 94 116 chr3 133728147 133728206 -93796372 + MLT1F1 LTR MaLR 5 64 -503 5501 81 19 41 chr3 133728206 133729057 -93795521 + L1MA1 LINE L1 5465 6296 -6 1102 222 94 116 chr3 133729057 133729573 -93795005 + MLT1F1 LTR MaLR 64 567 0 1802 162 26 0 chr3 133729661 133729964 -93794614 - AluSx SINE Alu 0 312 2 1130 286 75 16 chr3 133730698 133731268 -93793310 - HAL1b LINE L1 -300 1048 445 200 33 0 33 chr3 133731273 133731303 -93793275 + (TTTC)n Simple_repeat Simple_repeat 2 30 0 1629 240 112 57 chr3 133732159 133732721 -93791857 - MLT1E LTR MaLR 0 593 1 3597 182 31 9 chr3 133732971 133733670 -93790908 + L1MB5 LINE L1 5438 6152 -22 590 297 77 53 chr3 133734570 133734907 -93789671 + Tigger8 DNA MER2_type 322 666 0 22 0 0 0 chr3 133735974 133735996 -93788582 + AT_rich Low_complexity Low_complexity 1 22 0 386 335 75 19 chr3 133736137 133736349 -93788229 - MIR SINE MIR -26 236 13 2213 117 0 3 chr3 133737943 133738241 -93786337 + AluSx SINE Alu 1 297 -15 365 312 0 4 chr3 133738367 133738532 -93786046 + MIR SINE MIR 38 262 0 222 191 0 0 chr3 133739071 133739113 -93785465 + CT-rich Low_complexity Low_complexity 2 43 0 201 264 16 62 chr3 133739585 133739714 -93784864 + CT-rich Low_complexity Low_complexity 3 125 0 372 330 196 25 chr3 133740902 133741269 -93783309 - L2 LINE L2 -367 2947 2518 630 234 105 36 chr3 133741920 133742118 -93782460 + MIR SINE MIR 12 222 -40 320 321 37 49 chr3 133742873 133743035 -93781543 + L2 LINE L2 2868 3027 -245 251 369 19 64 chr3 133743688 133743845 -93780733 + L2 LINE L2 3087 3236 -36 271 372 124 0 chr3 133743857 133743986 -93780592 - MER91A DNA MER1_type -50 146 2 184 215 169 31 chr3 133743986 133744033 -93780545 + L2 LINE L2 3217 3272 0 492 300 79 7 chr3 133744356 133744496 -93780082 - MIR3 SINE MIR -28 180 31 382 273 23 39 chr3 133745290 133745418 -93779160 + MIR3 SINE MIR 77 202 -6 980 223 9 23 chr3 133745545 133745765 -93778813 - MER58A DNA MER1_type -4 220 4 343 310 42 61 chr3 133746520 133746781 -93777797 + MLT1K LTR MaLR 191 446 -142 2222 109 10 10 chr3 133749918 133750231 -93774347 + AluSp SINE Alu 1 313 0 255 278 49 56 chr3 133750285 133750429 -93774149 + MIR SINE MIR 28 170 -92 238 254 0 30 chr3 133751116 133751183 -93773395 + MER39 LTR ERV1 218 282 -425 * 809 203 134 67 chr3 133751161 133751516 -93773062 + MER39 LTR ERV1 176 707 0 285 232 131 0 chr3 133752201 133752300 -93772278 - MLT1I LTR MaLR -7 402 291 21 0 0 0 chr3 133753187 133753208 -93771370 + AT_rich Low_complexity Low_complexity 1 21 0 2346 194 155 19 chr3 133753305 133753923 -93770655 + MER39 LTR ERV1 6 707 0 361 318 12 31 chr3 133754150 133754408 -93770170 + L1ME3A LINE L1 5611 5863 -307 1838 153 0 20 chr3 133754423 133754724 -93769854 + AluSx SINE Alu 1 295 -17 35635 89 6 10 chr3 133754752 133760923 -93763655 + L1PA6 LINE L1 11 6154 0 1979 174 0 0 chr3 133761041 133761346 -93763232 - AluJb SINE Alu -5 307 3 2225 96 3 7 chr3 133761903 133762223 -93762355 - AluSp SINE Alu 0 313 1 1723 235 29 20 chr3 133762497 133762953 -93761625 - LTR40b LTR ERVL 0 462 3 678 229 167 0 chr3 133763000 133763192 -93761386 - MER58A DNA MER1_type 0 224 1 1388 251 188 14 chr3 133763217 133763276 -93761302 - L2 LINE L2 -36 3277 3230 3503 144 184 6 chr3 133763276 133763977 -93760601 - LTR1B LTR ERV1 0 826 1 1388 251 188 14 chr3 133763977 133764717 -93759861 - L2 LINE L2 -83 3230 2336 527 299 111 4 chr3 133765984 133766245 -93758333 - MLT1L LTR MaLR -13 602 314 328 203 14 0 chr3 133766814 133766888 -93757690 - MLT2C2 LTR ERVL -7 457 383 527 265 115 45 chr3 133766889 133767430 -93757148 + L1MEc LINE L1 1062 1612 -4603 1757 151 88 23 chr3 133767430 133767782 -93756796 - THE1C LTR MaLR 0 375 1 527 265 115 45 chr3 133767782 133767854 -93756724 + L1MEc LINE L1 1612 1678 -4537 303 321 80 25 chr3 133767885 133768159 -93756419 + L1MEc LINE L1 1875 2163 -4233 315 236 0 19 chr3 133768165 133768271 -93756307 + L1M4 LINE L1 3852 3955 -2191 2072 137 101 36 chr3 133768300 133768815 -93755763 - MER4A LTR ERV1 -10 455 43 4451 89 26 0 chr3 133768815 133769434 -93755144 - MER41B LTR ERV1 0 635 1 2072 137 101 36 chr3 133769434 133769481 -93755097 - MER4A LTR ERV1 -422 43 1 403 269 76 7 chr3 133769494 133769639 -93754939 - L1MA10 LINE L1 -2 6332 6178 204 403 42 8 chr3 133819693 133819812 -93704766 - L2 LINE L2 -188 3084 2962 267 54 0 0 chr3 133819957 133819994 -93704584 + (TC)n Simple_repeat Simple_repeat 2 38 0 198 0 0 0 chr3 133821063 133821085 -93703493 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 1571 172 0 56 chr3 133821088 133821305 -93703273 - AluJb SINE Alu -25 287 90 1971 163 0 3 chr3 133821305 133821605 -93702973 + AluJb SINE Alu 1 299 -13 1571 172 0 56 chr3 133821605 133821690 -93702888 - AluJb SINE Alu -222 90 2 563 151 40 125 chr3 133821691 133821733 -93702845 - L1MD2 LINE L1 -479 5880 5836 1900 140 38 3 chr3 133821733 133822026 -93702552 + AluSq SINE Alu 1 303 -10 563 151 40 125 chr3 133822026 133822135 -93702443 - L1MD2 LINE L1 -523 5836 5742 1540 136 16 8 chr3 133822204 133822446 -93702132 + AluSx SINE Alu 56 299 -13 366 129 0 0 chr3 133822446 133822508 -93702070 + (GGAA)n Simple_repeat Simple_repeat 1 62 0 1132 192 41 20 chr3 133822509 133822754 -93701824 - MER39B-int LTR ERV1 -6081 250 1 982 167 21 0 chr3 133822755 133822941 -93701637 - MER39B LTR ERV1 -35 618 429 372 89 18 0 chr3 133823462 133823518 -93701060 + FAM SINE Alu 119 175 0 1949 110 92 0 chr3 133823518 133823800 -93700778 + AluSg SINE Alu 1 308 -2 637 186 26 0 chr3 133824043 133824156 -93700422 + L1MC1 LINE L1 6218 6333 0 1894 153 14 7 chr3 133824166 133824447 -93700131 + AluSg SINE Alu 1 283 -27 845 199 31 0 chr3 133824454 133824615 -93699963 + LTR8 LTR ERV1 526 691 0 2263 77 40 3 chr3 133824987 133825285 -93699293 - AluY SINE Alu -1 310 2 1706 175 34 14 chr3 133826220 133826512 -93698066 - AluJb SINE Alu -14 298 1 2423 99 0 0 chr3 133826616 133826918 -93697660 - AluSx SINE Alu -10 302 1 1248 157 5 29 chr3 133826920 133827130 -93697448 - AluJo SINE Alu -21 291 87 2477 81 0 0 chr3 133827290 133827598 -93696980 - AluY SINE Alu -3 308 1 269 337 56 0 chr3 133827709 133827798 -93696780 - MIR SINE MIR -17 245 152 201 304 0 0 chr3 133827930 133827986 -93696592 - L2 LINE L2 -355 2959 2904 1384 196 59 51 chr3 133828002 133828253 -93696325 - MLT1C LTR MaLR -41 426 170 2049 151 3 0 chr3 133828253 133828564 -93696014 - AluSx SINE Alu 0 312 1 1384 196 59 51 chr3 133828564 133828684 -93695894 - MLT1C LTR MaLR -297 170 52 2086 147 0 3 chr3 133828938 133829245 -93695333 + AluJo SINE Alu 1 306 -6 1969 135 0 20 chr3 133829364 133829668 -93694910 + AluSx SINE Alu 3 300 -12 1945 143 0 19 chr3 133830213 133830528 -93694050 - AluSx SINE Alu -3 309 1 225 0 0 0 chr3 133831672 133831697 -93692881 + (T)n Simple_repeat Simple_repeat 1 25 0 320 153 0 0 chr3 133832591 133832650 -93691928 - MER39B LTR ERV1 -591 62 4 4057 133 108 44 chr3 133832670 133833691 -93690887 + pTR5 LTR ERV1 741 2067 -371 729 228 6 12 chr3 133833851 133834022 -93690556 - L1ME LINE L1 -644 5522 5353 2117 141 0 0 chr3 133834171 133834462 -93690116 + AluSx SINE Alu 1 291 -21 2487 76 0 3 chr3 133834468 133834772 -93689806 + AluY SINE Alu 1 303 -8 259 379 39 0 chr3 133834773 133834876 -93689702 + MIR SINE MIR 28 134 -128 231 250 0 19 chr3 133834876 133834928 -93689650 + CT-rich Low_complexity Low_complexity 3 53 0 248 218 36 0 chr3 133835122 133835177 -93689401 - MER66B LTR ERV1 -138 348 292 1067 155 54 73 chr3 133835177 133835475 -93689103 - LOR1-int LTR ERV1 -125 6206 5916 467 177 10 21 chr3 133835499 133835595 -93688983 - LOR1-int LTR ERV1 -437 4499 4405 442 192 0 0 chr3 133835621 133835694 -93688884 - LOR1-int LTR ERV1 -3178 4942 4870 602 117 0 0 chr3 133835710 133835787 -93688791 - AluJo SINE Alu -23 289 213 1624 120 47 0 chr3 133835787 133836045 -93688533 - LOR1-int LTR ERV1 -655 5676 5407 1430 116 45 5 chr3 133836045 133836244 -93688334 + AluJo SINE Alu 1 207 -105 1406 116 45 5 chr3 133836489 133836687 -93687891 - AluJo SINE Alu -106 206 1 1715 122 27 0 chr3 133836687 133836950 -93687628 + MER31-int LTR ERV1 5407 5676 -655 602 117 0 0 chr3 133836950 133837027 -93687551 + AluJo SINE Alu 213 289 -23 379 218 13 13 chr3 133837036 133837114 -93687464 + MER31-int LTR ERV1 3465 4943 -1473 496 172 10 20 chr3 133837140 133837239 -93687339 + MER31-int LTR ERV1 4405 4502 -434 1300 164 66 49 chr3 133837260 133837546 -93687032 + MER31-int LTR ERV1 5916 6206 -125 287 189 38 0 chr3 133837546 133837599 -93686979 + MER66B LTR ERV1 292 346 -140 1033 151 0 12 chr3 133837875 133838041 -93686537 - AluJo/FRAM SINE Alu -8 304 141 2236 93 21 0 chr3 133838044 133838333 -93686245 - AluSx SINE Alu -17 295 1 574 159 71 9 chr3 133838806 133838919 -93685659 + AluSq/x SINE Alu 2 121 -191 2352 50 0 7 chr3 133839051 133839358 -93685220 + AluY SINE Alu 1 305 0 2184 118 0 3 chr3 133840316 133840604 -93683974 + AluSc SINE Alu 9 295 -14 968 236 34 20 chr3 133840618 133840910 -93683668 + L1MC5 LINE L1 7608 7903 -58 2148 126 0 3 chr3 133840928 133841230 -93683348 + AluSx SINE Alu 1 301 -11 1167 94 7 0 chr3 133841238 133841387 -93683191 + AluSq/x SINE Alu 1 150 -163 1017 261 68 27 chr3 133841517 133841965 -93682613 - L2 LINE L2 -178 3135 2662 2379 62 3 3 chr3 133841965 133842254 -93682324 + AluY SINE Alu 1 289 -22 1017 261 68 27 chr3 133842254 133842286 -93682292 - L2 LINE L2 -651 2662 2633 412 282 34 0 chr3 133842878 133842995 -93681583 + L2 LINE L2 3189 3309 -4 6771 259 27 36 chr3 133844108 133844386 -93680192 - HERV17 LTR ERV1 -5580 3021 2742 8062 31 0 0 chr3 133844386 133845379 -93679199 - L1PA3 LINE L1 -5 6150 5157 6771 259 27 36 chr3 133845379 133847789 -93676789 - HERV17 LTR ERV1 -5859 2742 1 509 204 32 35 chr3 133847821 133847960 -93676618 - pTR5 LTR ERV1 -251 463 19 252 175 0 0 chr3 133848287 133848327 -93676251 - AluSp SINE Alu -134 169 130 21 71 0 0 chr3 133848329 133848371 -93676207 + AT_rich Low_complexity Low_complexity 1 42 0 2172 253 50 12 chr3 133848905 133849550 -93675028 - L1ME1 LINE L1 -5 6161 5493 * 2712 239 105 43 chr3 133849545 133849753 -93674825 + L1MDa LINE L1 1000 1194 -5346 2022 133 66 30 chr3 133849753 133850115 -93674463 + THE1C LTR MaLR 1 375 0 9578 133 41 41 chr3 133850117 133850621 -93673957 + THE1C-int LTR MaLR 3 505 -1075 2074 125 7 0 chr3 133850621 133850909 -93673669 + AluSc SINE Alu 1 290 -19 9578 133 41 41 chr3 133850909 133851981 -93672597 + THE1C-int LTR MaLR 505 1580 0 1751 152 95 26 chr3 133851981 133852330 -93672248 + THE1C LTR MaLR 1 373 -2 2712 239 105 43 chr3 133852330 133853473 -93671105 + L1MDa LINE L1 1193 2439 -4101 21 0 0 0 chr3 133853479 133853500 -93671078 + AT_rich Low_complexity Low_complexity 1 21 0 315 85 0 0 chr3 133853942 133853989 -93670589 + (TCTCTG)n Simple_repeat Simple_repeat 2 48 0 396 313 78 39 chr3 133854138 133854623 -93669955 - HAL1 LINE L1 -857 1650 1147 1594 179 112 3 chr3 133854783 133855096 -93669482 + MSTD LTR MaLR 46 392 -4 796 219 226 11 chr3 133856143 133856413 -93668165 + LTR50 LTR ERVL 3 330 -465 692 252 150 28 chr3 133856448 133856734 -93667844 + LTR50 LTR ERVL 475 795 0 2513 80 0 0 chr3 133857267 133857569 -93667009 - AluY SINE Alu -9 302 1 300 260 255 69 chr3 133857616 133857820 -93666758 - MIR SINE MIR -13 249 8 1921 167 0 0 chr3 133858167 133858461 -93666117 - AluJb SINE Alu -18 294 1 280 360 56 16 chr3 133859071 133859196 -93665382 + MIR SINE MIR 19 148 -60 655 308 60 49 chr3 133859229 133859795 -93664783 - MLT1K LTR MaLR 0 615 20 2224 127 3 19 chr3 133860008 133860331 -93664247 - MER1B DNA MER1_type -21 318 1 191 229 16 0 chr3 133861280 133861341 -93663237 + CT-rich Low_complexity Low_complexity 4 65 0 650 294 28 37 chr3 133862504 133862722 -93661856 + MIR SINE MIR 33 248 -14 201 381 0 0 chr3 133862848 133862911 -93661667 - MIR SINE MIR -67 141 79 326 233 124 16 chr3 133863722 133863851 -93660727 + MER103 DNA DNA 4 146 -20 210 373 47 27 chr3 133863913 133864063 -93660515 + MIR3 SINE MIR 28 180 -28 365 262 16 115 chr3 133864304 133864556 -93660022 + L2 LINE L2 2461 2687 -627 446 313 0 23 chr3 133864683 133864811 -93659767 - L2 LINE L2 0 3272 3148 334 179 52 11 chr3 133864811 133864942 -93659636 - MER5A DNA MER1_type 0 189 1 706 299 187 19 chr3 133864942 133865570 -93659008 - L2 LINE L2 -117 3196 2455 2244 111 0 19 chr3 133865907 133866222 -93658356 + AluSx SINE Alu 1 309 -3 534 212 205 7 chr3 133866369 133866520 -93658058 + MER5A DNA MER1_type 9 189 0 2264 104 0 10 chr3 133867349 133867657 -93656921 - AluSx SINE Alu -5 307 3 227 431 76 0 chr3 133869085 133869229 -93655349 - L2 LINE L2 -2 3270 3116 1260 264 109 18 chr3 133869490 133869983 -93654595 - L1ME4a LINE L1 -5 6116 5579 23 0 0 0 chr3 133870140 133870163 -93654415 + AT_rich Low_complexity Low_complexity 1 23 0 241 191 0 29 chr3 133870500 133870568 -93654010 + L1MC4 LINE L1 6638 6703 -1339 271 248 20 50 chr3 133872177 133872278 -93652300 + MIR SINE MIR 114 211 -51 449 264 9 0 chr3 133873016 133873122 -93651456 + MIR SINE MIR 81 187 -75 302 285 57 8 chr3 133873139 133873262 -93651316 + MIR SINE MIR 124 252 -10 229 250 15 15 chr3 133874266 133874334 -93650244 + GA-rich Low_complexity Low_complexity 3 70 0 351 346 7 15 chr3 133874393 133874529 -93650049 + MIR SINE MIR 20 154 -108 310 324 102 25 chr3 133874936 133875086 -93649492 - L3 LINE CR1 -911 666 488 2664 172 21 5 chr3 133875086 133875505 -93649073 + MSTB LTR MaLR 1 426 0 310 324 102 25 chr3 133875505 133875598 -93648980 - L3 LINE CR1 -1089 488 404 32 0 0 0 chr3 133875632 133875664 -93648914 + AT_rich Low_complexity Low_complexity 1 32 0 190 339 98 63 chr3 133875785 133875959 -93648619 - L3 LINE CR1 -1353 224 45 299 113 16 0 chr3 133876315 133876377 -93648201 + (CA)n Simple_repeat Simple_repeat 2 64 0 908 160 13 13 chr3 133876377 133876533 -93648045 + MER3 DNA MER1_type 1 156 -53 2343 45 42 0 chr3 133877028 133877314 -93647264 + AluY SINE Alu 1 298 -13 850 176 6 25 chr3 133877385 133877544 -93647034 + MIR SINE MIR 17 172 -90 292 254 28 14 chr3 133878010 133878081 -93646497 - L2 LINE L2 -1 3271 3200 2052 133 52 17 chr3 133879469 133879831 -93644747 + THE1C LTR MaLR 1 375 0 180 0 0 0 chr3 133879920 133879940 -93644638 + (TTA)n Simple_repeat Simple_repeat 2 21 0 277 240 97 5 chr3 133879977 133880084 -93644494 - MIR SINE MIR -80 128 6 1037 203 10 90 chr3 133880156 133880194 -93644384 + MLT1A1 LTR MaLR 81 120 -245 206 81 27 0 chr3 133880194 133880231 -93644347 + (TTTTG)n Simple_repeat Simple_repeat 3 40 0 2241 126 39 41 chr3 133880236 133880600 -93643978 + THE1B LTR MaLR 1 363 -1 1675 178 0 18 chr3 133880600 133880886 -93643692 - AluJb SINE Alu -31 281 1 1037 203 10 90 chr3 133880886 133881150 -93643428 + MLT1A1 LTR MaLR 122 365 0 180 0 0 0 chr3 133881692 133881712 -93642866 + (TGGGGG)n Simple_repeat Simple_repeat 3 22 0 30 0 0 0 chr3 133881954 133881984 -93642594 + AT_rich Low_complexity Low_complexity 1 30 0 5584 93 0 4 chr3 133882575 133883328 -93641250 - L1PB1 LINE L1 -1 6150 5401 505 255 27 90 chr3 133884382 133884570 -93640008 + MER5B DNA MER1_type 3 178 0 955 222 33 0 chr3 133884578 133884758 -93639820 - MER5A DNA MER1_type 0 189 4 2164 73 7 15 chr3 133886614 133886912 -93637666 + AluSg SINE Alu 11 283 -27 567 253 76 38 chr3 133887097 133887441 -93637137 + LTR18B LTR ERVL 1 614 0 4867 209 3 8 chr3 133887453 133888429 -93636149 + HERVL18 LTR ERVL 4 974 -5073 910 185 6 6 chr3 133888412 133888590 -93635988 + HERVL18 LTR ERVL 2758 2935 -3112 * 243 61 0 0 chr3 133889629 133889662 -93634916 + (GA)n Simple_repeat Simple_repeat 1 33 0 262 315 65 0 chr3 133889670 133889778 -93634800 + MER94 DNA DNA 1 115 -19 185 283 22 0 chr3 133890007 133890053 -93634525 + MIR SINE MIR 104 150 -112 3383 281 70 16 chr3 133890876 133892164 -93632414 + L2 LINE L2 1786 3138 -175 1629 183 35 7 chr3 133892360 133892645 -93631933 + AluJb SINE Alu 1 293 -19 237 226 0 19 chr3 133893758 133893810 -93630768 - L3 LINE CR1 -2 1575 1525 294 235 212 0 chr3 133893810 133893895 -93630683 + MER5B DNA MER1_type 2 104 -74 442 313 62 31 chr3 133894045 133894240 -93630338 - L3 LINE CR1 -147 1430 1230 335 273 127 18 chr3 133894248 133894358 -93630220 - L2 LINE L2 -14 3258 3137 398 339 54 31 chr3 133894435 133894659 -93629919 - L3 LINE CR1 -351 1226 998 2105 69 4 0 chr3 133895254 133895516 -93629062 - AluY SINE Alu -20 291 29 24 32 0 0 chr3 133895660 133895691 -93628887 + AT_rich Low_complexity Low_complexity 1 31 0 192 330 102 93 chr3 133896791 133897233 -93627345 - L2 LINE L2 -11 3261 2816 307 262 0 60 chr3 133897690 133897774 -93626804 - MER5A DNA MER1_type -48 141 63 186 43 0 0 chr3 133898441 133898464 -93626114 + (TG)n Simple_repeat Simple_repeat 2 24 0 457 321 29 53 chr3 133899584 133899827 -93624751 + MIR SINE MIR 26 262 0 258 204 19 0 chr3 133900796 133900850 -93623728 - MLT1K LTR MaLR -1 587 533 224 287 11 11 chr3 133901996 133902083 -93622495 + GA-rich Low_complexity Low_complexity 5 91 0 315 259 44 13 chr3 133902160 133902263 -93622315 - MER91 DNA MER1_type -1 189 86 215 296 38 68 chr3 133902663 133902795 -93621783 - MIR SINE MIR -111 151 24 2163 108 3 25 chr3 133903351 133903706 -93620872 + AluSx SINE Alu 1 312 0 241 349 41 34 chr3 133903948 133904094 -93620484 + L2 LINE L2 2910 3056 -216 308 294 137 0 chr3 133904142 133904244 -93620334 - L2 LINE L2 -11 3261 3146 469 316 50 0 chr3 133904315 133904454 -93620124 + L2 LINE L2 3127 3272 0 1980 116 10 46 chr3 133905438 133905741 -93618837 - AluSg SINE Alu -18 292 1 492 93 47 0 chr3 133906028 133906114 -93618464 - L1MC2 LINE L1 -1 6343 6254 307 306 6 44 chr3 133906125 133906330 -93618248 - HAL1b LINE L1 -127 2380 796 250 294 59 35 chr3 133906685 133906855 -93617723 - HAL1 LINE L1 -829 1678 1505 253 272 10 29 chr3 133907084 133907187 -93617391 - L1MEd LINE L1 -4974 1145 1045 289 240 0 13 chr3 133907619 133907694 -93616884 + CT-rich Low_complexity Low_complexity 3 76 0 454 216 37 62 chr3 133909051 133909214 -93615364 + MIR3 SINE MIR 9 166 -65 199 290 48 0 chr3 133909551 133909613 -93614965 + L3 LINE CR1 1065 1129 -448 364 321 29 7 chr3 133909872 133910009 -93614569 + L3 LINE CR1 1180 1319 -258 261 319 83 53 chr3 133910411 133910580 -93613998 - MER5A DNA MER1_type -5 184 11 212 316 21 32 chr3 133910564 133910659 -93613919 + L3 LINE CR1 1481 1574 -3 * 196 224 45 75 chr3 133911099 133911166 -93613412 + MER5A DNA MER1_type 12 76 -113 * 517 214 14 119 chr3 133911125 133911270 -93613308 - MER5B DNA MER1_type -23 166 52 2335 55 15 58 chr3 133911270 133911595 -93612983 + AluY SINE Alu 1 311 0 517 214 14 119 chr3 133911595 133911643 -93612935 - MER5B DNA MER1_type -137 52 1 274 267 96 74 chr3 133911643 133911766 -93612812 + MER5A DNA MER1_type 61 186 -3 375 289 38 53 chr3 133911779 133911928 -93612650 + MIR SINE MIR 21 166 -61 353 336 25 8 chr3 133911935 133912047 -93612531 + MIR SINE MIR 1 114 -148 413 265 182 0 chr3 133912047 133912179 -93612399 - MER5A DNA MER1_type -2 187 32 1546 167 79 50 chr3 133912194 133912572 -93612006 - MER45B DNA AcHobo -19 1021 633 3617 126 4 7 chr3 133912607 133913170 -93611408 - L1PA15 LINE L1 -6 6159 5599 2125 98 0 30 chr3 133913170 133913506 -93611072 + L1PA15 LINE L1 5276 5601 -564 * 4334 169 86 23 chr3 133913504 133913851 -93610727 - L1PB4 LINE L1 -4 6152 5828 294 95 0 0 chr3 133913851 133913893 -93610685 + (TA)n Simple_repeat Simple_repeat 1 42 0 4334 169 86 23 chr3 133913893 133914083 -93610495 - L1PB4 LINE L1 -328 5828 5651 2156 111 42 31 chr3 133914083 133914443 -93610135 - THE1B LTR MaLR 0 364 1 4334 169 86 23 chr3 133914443 133915765 -93608813 - L1PB4 LINE L1 -505 5651 4169 483 379 59 39 chr3 133915802 133916311 -93608267 - L1M2 LINE L1 -6321 528 10 2350 225 81 26 chr3 133916318 133916904 -93607674 - MER45B DNA AcHobo -394 646 24 2463 85 0 13 chr3 133916904 133917220 -93607358 + AluSq SINE Alu 1 312 -1 2350 225 81 26 chr3 133917220 133917244 -93607334 - MER45B DNA AcHobo -1016 24 3 271 127 127 48 chr3 133918499 133918562 -93606016 + MER110A LTR ERV1 69 136 -332 478 261 141 5 chr3 133918710 133918909 -93605669 + MER110A LTR ERV1 243 468 0 245 170 7 69 chr3 133918952 133919010 -93605568 + MIR SINE MIR 46 107 -101 1869 150 92 34 chr3 133919010 133919522 -93605056 + MLT2A2 LTR ERVL 1 554 0 477 248 109 0 chr3 133919523 133919660 -93604918 + MIR SINE MIR 100 251 -11 773 193 127 44 chr3 133919660 133919803 -93604775 + L1MA9 LINE L1 6005 6135 -177 477 0 0 0 chr3 133919803 133919856 -93604722 + (CA)n Simple_repeat Simple_repeat 2 54 0 773 193 127 44 chr3 133919856 133919987 -93604591 + L1MA9 LINE L1 6135 6302 -10 28 0 0 0 chr3 133920033 133920061 -93604517 + AT_rich Low_complexity Low_complexity 1 28 0 464 188 98 0 chr3 133920811 133920923 -93603655 + MER5C DNA MER1_type 1 123 -201 208 146 24 0 chr3 133921112 133921153 -93603425 + MER5C DNA MER1_type 283 324 0 279 0 0 0 chr3 133921894 133921925 -93602653 + (TG)n Simple_repeat Simple_repeat 2 32 0 198 0 0 0 chr3 133921924 133921946 -93602632 + (TA)n Simple_repeat Simple_repeat 1 22 0 * 707 222 0 6 chr3 133922044 133922206 -93602372 + MER46A DNA MER2_type 1 161 -75 781 179 0 0 chr3 133922206 133922340 -93602238 - Tigger3(Golem) DNA MER2_type 0 3029 2896 601 234 36 22 chr3 133923691 133923828 -93600750 + L2 LINE L2 3134 3272 0 186 328 69 0 chr3 133924443 133924501 -93600077 - L2 LINE L2 -1 3312 3251 324 0 0 0 chr3 133925292 133925328 -93599250 + (TC)n Simple_repeat Simple_repeat 2 37 0 1842 195 60 68 chr3 133925539 133926052 -93598526 + MLT2B1 LTR ERVL 1 509 -11 193 258 0 91 chr3 133926128 133926194 -93598384 - L2 LINE L2 -4 3268 3209 731 289 125 58 chr3 133926486 133927205 -93597373 + L1M4 LINE L1 2392 3158 -2988 651 174 58 0 chr3 133927208 133927329 -93597249 + FRAM SINE Alu 1 40 0 32 0 0 0 chr3 133928232 133928264 -93596314 + AT_rich Low_complexity Low_complexity 1 32 0 180 0 0 0 chr3 133928465 133928485 -93596093 + (A)n Simple_repeat Simple_repeat 1 20 0 262 371 0 10 chr3 133930184 133930281 -93594297 - MIR SINE MIR -141 121 26 237 33 0 0 chr3 133930565 133930595 -93593983 + (T)n Simple_repeat Simple_repeat 1 30 0 2247 83 3 20 chr3 133931442 133931743 -93592835 + AluSp SINE Alu 1 296 -17 192 267 133 13 chr3 133931992 133932067 -93592511 - L2 LINE L2 -50 3222 3139 180 246 231 0 chr3 133932223 133932288 -93592290 + MIR SINE MIR 30 109 -99 226 171 57 0 chr3 133932288 133932358 -93592220 + (TA)n Simple_repeat Simple_repeat 2 75 0 232 286 0 0 chr3 133932377 133932433 -93592145 + MIR3 SINE MIR 153 208 0 212 304 129 89 chr3 133933246 133933618 -93590960 + L2 LINE L2 2859 3245 -27 996 90 0 0 chr3 133934160 133934294 -93590284 + AluSp/q SINE Alu 176 309 -4 2058 83 11 0 chr3 133934303 133934568 -93590010 - AluSq SINE Alu -45 268 1 582 268 98 16 chr3 133934665 133934859 -93589719 + MIR SINE MIR 32 241 -21 194 286 0 0 chr3 133935681 133935730 -93588848 + L2 LINE L2 3214 3262 -10 2083 154 0 0 chr3 133936716 133937028 -93587550 - AluSx SINE Alu 0 312 1 2453 73 0 3 chr3 133937043 133937346 -93587232 + AluY SINE Alu 1 302 -9 256 379 39 0 chr3 133937347 133937450 -93587128 + MIR SINE MIR 28 134 -128 231 250 0 19 chr3 133937450 133937502 -93587076 + CT-rich Low_complexity Low_complexity 3 53 0 685 321 70 21 chr3 133937823 133938411 -93586167 - L1ME3 LINE L1 -214 5948 5332 235 198 21 73 chr3 133938563 133938659 -93585919 + T-rich Low_complexity Low_complexity 5 95 0 445 303 55 20 chr3 133939073 133939555 -93585023 - L1MEd LINE L1 -872 1618 1022 1911 82 29 0 chr3 133939583 133939863 -93584715 - L1MA1 LINE L1 -1 6301 6014 24 53 0 0 chr3 133939914 133939952 -93584626 + AT_rich Low_complexity Low_complexity 1 38 0 946 307 59 47 chr3 133940128 133940975 -93583603 - L1MEd LINE L1 -5240 879 23 191 276 35 35 chr3 133941085 133941143 -93583435 + L2 LINE L2 3244 3301 -12 340 294 126 16 chr3 133942077 133942332 -93582246 - MLT1K LTR MaLR -27 561 279 2180 129 36 33 chr3 133944379 133944742 -93579836 + THE1B LTR MaLR 1 364 0 730 153 27 82 chr3 133944746 133944929 -93579649 + MER44D DNA MER2_type 22 464 -145 1326 130 5 0 chr3 133944931 133945146 -93579432 - L1MB3 LINE L1 -177 6006 5791 260 259 99 0 chr3 133945546 133945627 -93578951 + MIR SINE MIR 155 243 -19 352 193 138 28 chr3 133945629 133945738 -93578840 + MIR3 SINE MIR 70 190 -18 341 315 74 20 chr3 133949079 133949228 -93575350 + MIR3 SINE MIR 50 206 -2 1066 177 110 47 chr3 133949448 133949765 -93574813 + MER57A LTR ERV1 67 403 0 272 211 0 66 chr3 133950140 133950214 -93574364 + LTR33A LTR ERVL 437 505 -18 773 174 42 182 chr3 133950214 133950599 -93573979 - MLT2D LTR ERVL 0 414 84 1747 40 0 0 chr3 133951039 133951261 -93573317 - L1PA3 LINE L1 -282 5873 5652 2218 51 0 0 chr3 133951261 133951576 -93573002 + L1PA3 LINE L1 5879 6193 0 982 342 13 21 chr3 133952000 133952684 -93571894 + ERVL-E LTR ERVL 1257 1887 -3109 267 359 31 7 chr3 133952821 133953022 -93571556 + ERVL-E LTR ERVL 2781 3024 -2013 1114 300 32 10 chr3 133953272 133953679 -93570899 + ERVL-E LTR ERVL 3332 3747 -2017 2427 231 28 39 chr3 133953770 133954513 -93570065 + ERVL-E LTR ERVL 3883 4617 -1147 465 274 38 25 chr3 133954883 133955074 -93569504 + ERVL-E LTR ERVL 5128 5376 -317 340 297 69 21 chr3 133955425 133955570 -93569008 + MLT2E LTR ERVL 1 152 -476 258 193 0 18 chr3 133955803 133955860 -93568718 + LTR33A LTR ERVL 459 514 -9 741 160 0 30 chr3 133956351 133956482 -93568096 + FLAM_A SINE Alu 4 130 -3 2755 85 92 2 chr3 133956698 133957109 -93567469 + LTR7 LTR ERV1 1 448 -2 184 313 30 0 chr3 133957156 133957223 -93567355 + MIR SINE MIR 88 156 -106 27 0 0 0 chr3 133957396 133957423 -93567155 + AT_rich Low_complexity Low_complexity 1 27 0 331 246 80 29 chr3 133958808 133958946 -93565632 - MIR SINE MIR -32 230 86 337 343 59 47 chr3 133961263 133961499 -93563079 + MIR SINE MIR 3 241 -21 783 281 25 29 chr3 133961519 133961757 -93562821 + MIR SINE MIR 2 238 -24 389 268 109 0 chr3 133961869 133962007 -93562571 + MIR SINE MIR 105 257 -5 418 269 132 71 chr3 133962323 133962380 -93562198 - MIR SINE MIR 0 262 210 3035 169 10 7 chr3 133962380 133962982 -93561596 - L1MB7 LINE L1 0 6184 5581 418 269 132 71 chr3 133962982 133963121 -93561457 - MIR SINE MIR -52 210 54 283 286 24 12 chr3 133963413 133963581 -93560997 - L1MB7 LINE L1 -854 5292 5123 816 295 23 5 chr3 133963582 133963799 -93560779 + MIR SINE MIR 21 241 -21 462 312 76 28 chr3 133964190 133964507 -93560071 - L1MEd LINE L1 -5447 672 341 216 172 0 71 chr3 133964813 133964912 -93559666 + CT-rich Low_complexity Low_complexity 4 95 0 318 326 37 59 chr3 133965641 133965776 -93558802 - L2 LINE L2 -2 3270 3139 2174 95 0 20 chr3 133966071 133966375 -93558203 - AluSg SINE Alu -11 299 2 2401 81 3 0 chr3 133967176 133967485 -93557093 - AluSp SINE Alu -3 310 1 27 0 0 0 chr3 133968230 133968257 -93556321 + AT_rich Low_complexity Low_complexity 1 27 0 493 342 29 29 chr3 133968353 133968631 -93555947 + L1ME LINE L1 5386 5663 -458 9140 208 61 31 chr3 133968636 133971276 -93553302 + L1ME4a LINE L1 1 2713 -3827 8636 24 0 201 chr3 133971276 133972756 -93551822 + SVA Other Other 205 1386 0 9140 208 61 31 chr3 133972756 133972791 -93551787 + L1ME4a LINE L1 2713 2745 -3795 3169 254 51 9 chr3 133972799 133973974 -93550604 + L1ME4a LINE L1 2796 4019 -2521 2835 184 47 22 chr3 133973978 133974618 -93549960 + L1MD1 LINE L1 5587 6242 0 441 216 115 5 chr3 133974630 133974848 -93549730 + L1ME4a LINE L1 6092 6333 -182 392 315 21 8 chr3 133974860 133975098 -93549480 + L1MC4a LINE L1 4762 5002 -1144 408 138 0 0 chr3 133975104 133975169 -93549409 + MLT2B3 LTR ERVL 1 65 -489 2182 174 35 53 chr3 133975274 133975762 -93548816 + MLT2B3 LTR ERVL 76 554 0 301 288 65 24 chr3 133975782 133975952 -93548626 + L1MC4a LINE L1 5025 5201 -945 526 114 0 0 chr3 133975952 133976031 -93548547 + L1MA2 LINE L1 6226 6304 0 336 223 114 17 chr3 133976111 133976286 -93548292 + L1MC4a LINE L1 5255 5446 -2362 375 141 0 0 chr3 133976310 133976374 -93548204 + (CA)n Simple_repeat Simple_repeat 1 64 0 400 154 0 0 chr3 133976374 133976439 -93548139 + LTR40b LTR ERVL 338 402 -60 251 122 20 20 chr3 133976448 133976497 -93548081 + L1MC4a LINE L1 5739 5787 -334 1363 243 34 48 chr3 133976497 133976937 -93547641 - LTR40b LTR ERVL 0 462 29 325 255 123 19 chr3 133976949 133977055 -93547523 + L1MC4a LINE L1 5781 5897 -1911 211 136 0 23 chr3 133977077 133977121 -93547457 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 5232 210 61 64 chr3 133977231 133979070 -93545508 + L1MC4a LINE L1 5973 7807 -1 23 0 0 0 chr3 133979469 133979492 -93545086 + AT_rich Low_complexity Low_complexity 1 23 0 800 283 108 41 chr3 133979512 133980028 -93544550 - L1ME4a LINE L1 -236 5885 5335 448 361 107 15 chr3 133980188 133980598 -93543980 + L3 LINE CR1 1128 1575 -2 181 368 108 10 chr3 133981061 133981265 -93543313 + L3b LINE CR1 1328 1551 -32 470 279 9 9 chr3 133981791 133981902 -93542676 - MIR3 SINE MIR -49 159 49 449 360 0 0 chr3 133983117 133983242 -93541336 - MIR3 SINE MIR -49 159 35 294 257 52 44 chr3 133983796 133983932 -93540646 + MIR3 SINE MIR 18 154 -54 205 191 24 0 chr3 133985647 133985689 -93538889 + GA-rich Low_complexity Low_complexity 3 45 0 340 333 45 15 chr3 133986301 133986433 -93538145 - L2 LINE L2 -4 3268 3133 597 245 88 115 chr3 133986468 133987064 -93537514 - L2 LINE L2 0 3313 2743 280 330 151 14 chr3 133988820 133989038 -93535540 - L2 LINE L2 -189 3083 2836 1802 241 73 17 chr3 133989317 133989840 -93534738 + MLT1E2 LTR MaLR 51 602 -24 597 324 68 18 chr3 133989875 133990097 -93534481 + MIR SINE MIR 30 262 0 233 250 0 0 chr3 133990128 133990172 -93534406 + MIR SINE MIR 201 244 -18 1193 203 73 16 chr3 133990792 133991161 -93533417 - MER69 DNA AcHobo 0 2526 2137 30 0 0 0 chr3 133991399 133991429 -93533149 + AT_rich Low_complexity Low_complexity 1 30 0 9532 184 7 7 chr3 133991469 133994585 -93529993 - L1PB1 LINE L1 -22 6845 3730 840 259 40 50 chr3 133994630 133995031 -93529547 - L1PB1 LINE L1 -6461 402 6 284 197 121 0 chr3 133995257 133995323 -93529255 - MER69 DNA AcHobo -102 75 2 386 310 94 38 chr3 133995375 133995588 -93528990 + L2 LINE L2 2893 3117 -155 383 302 60 0 chr3 133995809 133995925 -93528653 - L2 LINE L2 -262 3010 2888 241 364 100 0 chr3 133995946 133996086 -93528492 + L2 LINE L2 3110 3263 -9 647 210 66 6 chr3 133996167 133996334 -93528244 + MER104 DNA MER2_type 4 180 0 619 332 45 14 chr3 133997072 133997364 -93527214 - L3 LINE CR1 -82 1495 1195 726 268 21 26 chr3 133997476 133997666 -93526912 - MIR SINE MIR -22 240 52 1853 178 38 67 chr3 133998110 133998555 -93526023 - MSTB1 LTR MaLR 0 432 1 279 0 0 0 chr3 133998674 133998705 -93525873 + (TA)n Simple_repeat Simple_repeat 2 32 0 1794 140 15 4 chr3 133998710 133998975 -93525603 - AluSx SINE Alu -44 268 1 262 314 19 0 chr3 133999044 133999149 -93525429 - LTR16A1 LTR ERVL 0 457 351 416 329 114 22 chr3 133999420 133999648 -93524930 - MIR SINE MIR -3 259 11 293 358 73 0 chr3 133999713 133999836 -93524742 - L2 LINE L2 -4 3268 3137 798 269 135 14 chr3 134001700 134001982 -93522596 + MLT1I LTR MaLR 93 408 -1 25 31 0 0 chr3 134002149 134002181 -93522397 + AT_rich Low_complexity Low_complexity 1 32 0 414 340 25 12 chr3 134003747 134003909 -93520669 + MIR3 SINE MIR 17 180 -28 234 340 190 43 chr3 134003967 134004199 -93520379 - L2 LINE L2 -45 3227 2962 267 54 0 0 chr3 134004344 134004381 -93520197 + (TC)n Simple_repeat Simple_repeat 2 38 0 889 261 36 82 chr3 134004957 134005432 -93519146 - MLT1J LTR MaLR -39 472 20 974 96 0 0 chr3 134005457 134005582 -93518996 - AluSq/x SINE Alu -187 125 1 189 74 0 0 chr3 134005991 134006018 -93518560 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 674 287 68 27 chr3 134006095 134006433 -93518145 - L2 LINE L2 -80 3233 2882 527 313 129 15 chr3 134007110 134007311 -93517267 - L2 LINE L2 -539 2775 2552 1873 155 96 34 chr3 134008457 134008479 -93516099 - MSTB1 LTR MaLR 0 432 413 4249 126 2 10 chr3 134008479 134009096 -93515482 + LTR9 LTR ERV1 1 612 0 1873 155 96 34 chr3 134009096 134009480 -93515098 - MSTB1 LTR MaLR -19 413 1 1414 201 76 6 chr3 134009480 134009806 -93514772 - MLT1A1 LTR MaLR -16 349 1 10397 99 19 0 chr3 134009979 134012337 -93512241 + L1PA8A LINE L1 3704 6104 -27 261 321 0 0 chr3 134012583 134012667 -93511911 - MIR SINE MIR 0 262 179 195 318 0 18 chr3 134012648 134012744 -93511834 - MIR3 SINE MIR -45 163 71 * 2373 210 44 2 chr3 134013085 134013538 -93511040 + MER70A LTR ERVL 1 472 0 252 347 0 13 chr3 134014134 134014209 -93510369 - MIR SINE MIR -187 75 2 324 295 13 0 chr3 134014650 134014728 -93509850 + MIR SINE MIR 35 113 -95 1148 191 39 88 chr3 134015174 134015607 -93508971 - MLT2B1 LTR ERVL -1 413 3 2520 60 0 13 chr3 134017060 134017375 -93507203 + AluY SINE Alu 1 311 0 298 331 27 51 chr3 134017543 134017776 -93506802 - MIR SINE MIR -27 235 4 246 380 35 28 chr3 134018379 134018521 -93506057 - L2 LINE L2 -8 3264 3122 2084 226 22 31 chr3 134018862 134019416 -93505162 + MLT1E3 LTR MaLR 76 624 0 432 301 197 6 chr3 134019554 134019737 -93504841 + MIR SINE MIR 31 248 -14 532 227 221 0 chr3 134020212 134020366 -93504212 + MER5A DNA MER1_type 2 189 0 231 280 60 20 chr3 134020891 134020991 -93503587 + MIR SINE MIR 3 106 -156 392 174 0 14 chr3 134021035 134021104 -93503474 - MER5A DNA MER1_type 0 189 122 542 218 100 140 chr3 134021726 134021825 -93502753 - MIR SINE MIR -1 261 160 642 99 14 70 chr3 134021825 134021967 -93502611 - L1MA8 LINE L1 -6 6285 6152 542 218 100 140 chr3 134021967 134022138 -93502440 - MIR SINE MIR -102 160 2 34 24 0 0 chr3 134022997 134023038 -93501540 + AT_rich Low_complexity Low_complexity 1 41 0 432 0 0 0 chr3 134024907 134024955 -93499623 + (TG)n Simple_repeat Simple_repeat 2 49 0 1449 174 80 87 chr3 134025100 134025502 -93499076 - MER57A LTR ERV1 -2 401 3 1608 179 51 17 chr3 134025624 134025920 -93498658 + AluJo SINE Alu 1 306 -6 234 348 0 0 chr3 134026160 134026238 -93498340 - MIR SINE MIR -62 146 69 242 299 124 0 chr3 134026335 134026472 -93498106 - MIR SINE MIR 0 262 109 1041 229 0 0 chr3 134026552 134026762 -93497816 - MER63A DNA MER1_type 0 210 1 4334 152 51 42 chr3 134027693 134028476 -93496102 - MER54B LTR ERVL -2 791 2 2395 145 30 0 chr3 134029940 134030340 -93494238 - MSTB LTR MaLR -4 422 11 207 69 0 0 chr3 134030401 134030430 -93494148 + (TG)n Simple_repeat Simple_repeat 2 30 0 498 317 55 25 chr3 134030458 134030493 -93494085 + MIR SINE MIR 55 87 -175 2261 82 0 38 chr3 134030493 134030812 -93493766 - AluY SINE Alu -4 307 1 498 317 55 25 chr3 134030812 134030978 -93493600 + MIR SINE MIR 87 262 0 4209 181 23 63 chr3 134031748 134032807 -93491771 + L1 LINE L1 9 1024 -6541 * 11126 184 36 7 chr3 134032803 134035272 -93489306 + L1 LINE L1 3892 6432 -1133 2222 110 7 3 chr3 134035274 134035573 -93489005 + AluSq SINE Alu 1 300 -13 551 309 34 10 chr3 134035701 134035905 -93488673 - MLT1K LTR MaLR -358 230 22 232 276 0 66 chr3 134036111 134036187 -93488391 + L2 LINE L2 3189 3259 -54 335 294 31 69 chr3 134036948 134037108 -93487470 - MIR SINE MIR -71 191 38 230 231 0 19 chr3 134037716 134037768 -93486810 - L2 LINE L2 -9 3304 3254 678 286 68 38 chr3 134037791 134038189 -93486389 - L1ME LINE L1 -334 5787 5378 188 237 0 0 chr3 134039463 134039501 -93485077 + L2 LINE L2 3226 3263 -9 198 281 31 16 chr3 134039634 134039698 -93484880 - L3 LINE CR1 -1 1576 1512 25 0 0 0 chr3 134040212 134040237 -93484341 + AT_rich Low_complexity Low_complexity 1 25 0 1646 101 40 11 chr3 134040237 134040513 -93484065 - L1MA1 LINE L1 0 6302 6019 231 325 26 0 chr3 134040517 134040594 -93483984 - L3 LINE CR1 -246 1331 1253 192 326 67 22 chr3 134040599 134040688 -93483890 + L2 LINE L2 2992 3084 -188 180 305 37 49 chr3 134040695 134040777 -93483801 + MER5A DNA MER1_type 10 90 -99 228 310 0 14 chr3 134041032 134041103 -93483475 + L2 LINE L2 3203 3272 0 30 0 0 0 chr3 134041108 134041138 -93483440 + AT_rich Low_complexity Low_complexity 1 30 0 743 65 14 22 chr3 134041491 134041629 -93482949 + (TCTA)n Simple_repeat Simple_repeat 2 138 0 1537 146 77 19 chr3 134041852 134042112 -93482466 - AluJo SINE Alu -17 295 21 671 12 24 0 chr3 134042579 134042662 -93481916 + (AATAG)n Simple_repeat Simple_repeat 3 87 0 2358 90 0 0 chr3 134043470 134043770 -93480808 - AluY SINE Alu -11 300 1 22 0 0 0 chr3 134043777 134043799 -93480779 + AT_rich Low_complexity Low_complexity 1 22 0 198 222 0 0 chr3 134044541 134044595 -93479983 + CT-rich Low_complexity Low_complexity 1 54 0 278 296 59 15 chr3 134044885 134045020 -93479558 + L3b LINE CR1 1258 1398 -185 1027 189 20 76 chr3 134045199 134045548 -93479030 + MER33 DNA MER1_type 1 319 -5 2576 113 54 7 chr3 134046015 134046424 -93478154 + MSTA LTR MaLR 1 428 0 405 278 37 51 chr3 134046497 134046713 -93477865 - MLT1J LTR MaLR -8 503 291 304 222 136 0 chr3 134046852 134046933 -93477645 - MLT1J LTR MaLR -416 95 4 428 256 80 96 chr3 134048002 134048252 -93476326 + MIR SINE MIR 17 262 0 255 260 26 0 chr3 134048350 134048427 -93476151 + CT-rich Low_complexity Low_complexity 2 80 0 318 306 112 8 chr3 134049443 134049577 -93475001 + L2 LINE L2 3123 3270 -2 501 121 0 0 chr3 134052750 134052833 -93471745 + (TGGA)n Simple_repeat Simple_repeat 4 86 0 486 224 47 82 chr3 134054382 134054699 -93469879 - L1ME4a LINE L1 -233 5888 5583 234 0 0 0 chr3 134054711 134054737 -93469841 + (CA)n Simple_repeat Simple_repeat 1 26 0 2549 60 0 10 chr3 134055044 134055358 -93469220 + AluY SINE Alu 1 311 0 377 264 106 5 chr3 134055476 134055684 -93468894 - L1ME4a LINE L1 -1 6120 5892 337 265 119 49 chr3 134055697 134055882 -93468696 - L1ME4a LINE L1 -331 5790 5593 324 0 0 0 chr3 134056662 134056698 -93467880 + (CA)n Simple_repeat Simple_repeat 2 37 0 315 0 0 0 chr3 134056697 134056732 -93467846 + (TC)n Simple_repeat Simple_repeat 1 35 0 * 25 0 0 0 chr3 134056842 134056867 -93467711 + AT_rich Low_complexity Low_complexity 1 25 0 686 275 99 19 chr3 134057877 134058088 -93466490 - MLT1G1 LTR MaLR -23 572 345 492 223 5 154 chr3 134058087 134058221 -93466357 - MER63A DNA MER1_type -1478 210 110 * 2212 85 11 0 chr3 134058221 134058504 -93466074 - AluSg SINE Alu -24 286 1 492 223 5 154 chr3 134058504 134058557 -93466021 - MER63A DNA MER1_type -1578 110 51 763 159 0 0 chr3 134058713 134058826 -93465752 - AluSq/x SINE Alu -200 113 1 811 246 75 44 chr3 134058830 134059123 -93465455 - MLT1G1 LTR MaLR -293 302 1 1447 229 120 36 chr3 134059386 134059962 -93464616 - MLT1E3 LTR MaLR 0 624 1 324 285 20 86 chr3 134060032 134060183 -93464395 + MIR SINE MIR 81 221 -41 203 217 33 33 chr3 134060445 134060505 -93464073 + L2 LINE L2 3213 3272 0 1091 195 0 28 chr3 134062140 134062355 -93462223 - MER3 DNA MER1_type 0 209 1 1604 184 50 0 chr3 134062641 134062924 -93461654 - AluJo SINE Alu -15 297 1 430 314 45 21 chr3 134064618 134064837 -93459741 - MIR SINE MIR -18 244 20 1706 178 4 0 chr3 134065609 134065878 -93458700 - AluJb SINE Alu -36 276 7 5707 40 0 0 chr3 134065888 134066566 -93458012 + L1PA5 LINE L1 5469 6146 -8 1734 157 17 41 chr3 134066604 134066898 -93457680 - AluJo SINE Alu -25 287 1 255 93 0 0 chr3 134067587 134067630 -93456948 + (T)n Simple_repeat Simple_repeat 1 43 0 741 251 73 26 chr3 134067921 134068112 -93456466 + MIR SINE MIR 7 206 -56 2844 56 0 0 chr3 134069216 134069571 -93455007 + L1PA5 LINE L1 5799 6153 -1 21 0 0 0 chr3 134069572 134069593 -93454985 + AT_rich Low_complexity Low_complexity 1 21 0 613 309 60 0 chr3 134069926 134070178 -93454400 - MER102a DNA MER1_type -3 327 61 616 269 44 25 chr3 134070197 134070472 -93454106 + L1MC4a LINE L1 5673 5952 -1856 1282 203 22 77 chr3 134070502 134070906 -93453672 - MLT1B LTR MaLR -7 383 2 434 221 18 6 chr3 134070906 134071069 -93453509 + (TA)n Simple_repeat Simple_repeat 2 166 0 779 189 76 0 chr3 134072567 134072752 -93451826 + L1MD3 LINE L1 7787 7985 -10 22 0 0 0 chr3 134072753 134072775 -93451803 + AT_rich Low_complexity Low_complexity 1 22 0 591 331 153 13 chr3 134073795 134074167 -93450411 + L2 LINE L2 2871 3294 -19 257 203 172 0 chr3 134075091 134075155 -93449423 + L2 LINE L2 3232 3306 -7 286 289 55 23 chr3 134075187 134075315 -93449263 + MIR SINE MIR 106 237 -25 1544 246 42 16 chr3 134075753 134076201 -93448377 - MLT1C LTR MaLR 0 467 8 13621 173 57 6 chr3 134076584 134076949 -93447629 - L1PB1 LINE L1 0 6867 6522 381 43 0 0 chr3 134076949 134076996 -93447582 + (TG)n Simple_repeat Simple_repeat 2 48 0 228 35 0 0 chr3 134076995 134077024 -93447554 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 13621 173 57 6 chr3 134076996 134078489 -93446089 - L1PB1 LINE L1 -345 6522 5106 1901 145 53 0 chr3 134078489 134078771 -93445807 - AluSx SINE Alu -15 297 1 13621 173 57 6 chr3 134078771 134083444 -93441134 - L1PB1 LINE L1 -1761 5106 16 23 0 0 0 chr3 134083703 134083726 -93440852 + AT_rich Low_complexity Low_complexity 1 23 0 437 0 19 0 chr3 134083731 134083784 -93440794 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 1603 218 178 28 chr3 134083827 134084322 -93440256 - MLT1E2 LTR MaLR 0 626 58 1333 54 0 0 chr3 134084401 134084587 -93439991 - L1P LINE L1 -789 5357 5172 960 26 0 0 chr3 134084597 134084712 -93439866 - L1PA3 LINE L1 0 6155 6041 6680 33 1 0 chr3 134084732 134085571 -93439007 + L1PA3 LINE L1 5361 6200 0 817 161 19 0 chr3 134085576 134085737 -93438841 + L1M2 LINE L1 5572 5735 -565 192 77 0 0 chr3 134085738 134085764 -93438814 + (A)n Simple_repeat Simple_repeat 1 26 0 208 273 18 18 chr3 134085783 134085838 -93438740 - MIR SINE MIR -151 111 57 520 291 8 8 chr3 134085840 134085967 -93438611 - L2 LINE L2 0 3313 3187 2256 154 41 14 chr3 134086668 134087083 -93437495 - MSTB LTR MaLR 0 426 1 227 117 33 100 chr3 134088214 134088274 -93436304 - MLT2B1 LTR ERVL -4 516 461 204 226 0 0 chr3 134088288 134088341 -93436237 + (TAAA)n Simple_repeat Simple_repeat 4 56 0 1397 89 0 21 chr3 134088345 134088536 -93436042 - L1P4 LINE L1 -532 5636 5450 1907 114 36 4 chr3 134088536 134088815 -93435763 + L1PA10 LINE L1 5879 6167 -1 32 57 0 0 chr3 134088828 134088881 -93435697 + AT_rich Low_complexity Low_complexity 1 53 0 365 214 19 48 chr3 134089257 134089360 -93435218 + L2 LINE L2 3173 3272 0 230 331 28 36 chr3 134089458 134089569 -93435009 + MIR SINE MIR 36 148 -76 2924 116 0 12 chr3 134089933 134090363 -93434215 - L1PA10 LINE L1 -290 5878 5454 2128 91 14 3 chr3 134090366 134090651 -93433927 + L1PA10 LINE L1 5881 6168 0 2554 50 3 0 chr3 134090807 134091110 -93433468 + AluY SINE Alu 1 304 -7 461 330 110 9 chr3 134091136 134091354 -93433224 - MIR SINE MIR -18 244 5 25979 225 11 7 chr3 134092304 134097481 -93427097 + HERV17 LTR ERV1 508 8626 0 440 192 40 20 chr3 134097687 134097786 -93426792 + LTR12 LTR ERV1 238 338 -376 480 196 39 72 chr3 134097820 134097973 -93426605 + pTR5 LTR ERV1 11 468 -246 2053 88 8 0 chr3 134098002 134098264 -93426314 + AluSq SINE Alu 31 294 -19 23 54 0 0 chr3 134099300 134099337 -93425241 + AT_rich Low_complexity Low_complexity 1 37 0 583 301 86 26 chr3 134100512 134100598 -93423980 + MLT1L LTR MaLR 166 245 -370 2908 3 0 0 chr3 134100598 134100906 -93423672 + AluYa5 SINE Alu 1 308 -3 583 301 86 26 chr3 134100906 134101158 -93423420 + MLT1L LTR MaLR 245 524 -91 14546 148 22 9 chr3 134102188 134102842 -93421736 + Tigger1 DNA MER2_type 1 645 -1773 2059 148 52 30 chr3 134102842 134103208 -93421370 - THE1C LTR MaLR 0 375 2 14546 148 22 9 chr3 134103208 134104939 -93419639 + Tigger1 DNA MER2_type 645 2418 0 1165 197 38 5 chr3 134105048 134105261 -93419317 - MLT1A1 LTR MaLR -2 363 144 6237 135 43 12 chr3 134105274 134106491 -93418087 - L1MA5 LINE L1 -4 7317 6063 4679 110 34 10 chr3 134106494 134106521 -93418057 - L1MA2 LINE L1 0 6304 6279 2553 116 8 8 chr3 134106521 134106876 -93417702 + THE1A LTR MaLR 1 355 0 4679 110 34 10 chr3 134106876 134107555 -93417023 - L1MA2 LINE L1 -25 6279 5581 6099 158 19 4 chr3 134107555 134108850 -93415728 - L1M1 LINE L1 -751 6814 5615 * 8991 143 29 16 chr3 134108847 134110311 -93414267 - L1M1 LINE L1 -5135 2430 948 7674 67 147 2 chr3 134110311 134111378 -93413200 + MER11B LTR ERVK 1 1222 -14 4353 186 57 13 chr3 134111470 134112365 -93412213 - L1M1 LINE L1 -6610 955 22 3558 176 16 10 chr3 134112374 134113063 -93411515 - L1MA5 LINE L1 -1087 6080 5388 321 163 0 0 chr3 134113054 134113103 -93411475 + L1 LINE L1 4637 4685 -1461 * 1939 175 18 18 chr3 134113102 134113440 -93411138 - L1MA5 LINE L1 -6822 346 9 1024 123 6 19 chr3 134113440 134113602 -93410976 - MLT1A1 LTR MaLR -205 160 1 475 255 213 0 chr3 134114530 134114671 -93409907 + MER5A DNA MER1_type 13 183 -6 2202 98 3 17 chr3 134114861 134115157 -93409421 - AluSx SINE Alu -10 302 11 2362 140 119 8 chr3 134115912 134116297 -93408281 + MSTA LTR MaLR 1 428 0 9987 135 22 36 chr3 134116300 134117898 -93406680 + MSTA-int LTR MaLR 4 1580 0 2217 131 150 11 chr3 134117899 134118272 -93406306 + MSTA LTR MaLR 2 426 -2 197 286 122 20 chr3 134118550 134118648 -93405930 - L2 LINE L2 -4 3268 3161 414 273 39 16 chr3 134119072 134119200 -93405378 + MER94 DNA DNA 4 134 0 1509 164 107 58 chr3 134119382 134119729 -93404849 + MLT1A1 LTR MaLR 1 364 -1 188 214 371 0 chr3 134120245 134120334 -93404244 - MIR SINE MIR -31 231 110 23 0 0 0 chr3 134122789 134122812 -93401766 + AT_rich Low_complexity Low_complexity 1 23 0 2332 90 30 6 chr3 134122812 134123146 -93401432 - L1MA3 LINE L1 0 6305 5964 2278 147 27 6 chr3 134123146 134123804 -93400774 + L1M1 LINE L1 3354 4025 -3540 1624 172 0 60 chr3 134124094 134124260 -93400318 - AluJb SINE Alu -28 284 142 2088 126 0 22 chr3 134124260 134124577 -93400001 - AluSx SINE Alu -2 310 1 1624 172 0 60 chr3 134124577 134124712 -93399866 - AluJb SINE Alu -170 142 1 1127 235 28 0 chr3 134124828 134125045 -93399533 + MER58A DNA MER1_type 1 223 -1 1766 169 40 63 chr3 134127164 134127561 -93397017 + MLT1B LTR MaLR 1 388 -2 248 262 0 0 chr3 134128900 134128961 -93395617 - MLT1K LTR MaLR -13 575 515 1075 218 39 26 chr3 134128986 134129298 -93395280 - MER33 DNA MER1_type -17 307 1 375 181 35 238 chr3 134129492 134129719 -93394859 - MLT1K LTR MaLR -341 247 67 477 308 24 43 chr3 134130229 134130440 -93394138 + MIR SINE MIR 4 210 -52 279 257 44 59 chr3 134131401 134131537 -93393041 - MIR SINE MIR -56 206 73 373 258 86 11 chr3 134131835 134131928 -93392650 + L2 LINE L2 3191 3290 -23 24 67 0 0 chr3 134131934 134131979 -93392599 + AT_rich Low_complexity Low_complexity 1 45 0 528 264 106 24 chr3 134132988 134133196 -93391382 + L1ME LINE L1 5526 5750 -371 272 277 24 0 chr3 134133218 134133301 -93391277 + MER112 DNA MER1_type 1 85 -175 256 279 93 12 chr3 134133405 134133491 -93391087 + MER112 DNA MER1_type 167 259 -1 2126 104 0 3 chr3 134133600 134133887 -93390691 + AluSg SINE Alu 12 297 -13 2000 143 0 10 chr3 134134129 134134429 -93390149 + AluJb SINE Alu 1 297 -15 189 345 85 30 chr3 134134684 134134884 -93389694 - L2 LINE L2 -341 2973 2763 203 329 40 0 chr3 134134909 134134985 -93389593 - MER5B DNA MER1_type -35 143 65 221 377 54 15 chr3 134135074 134135204 -93389374 - L2 LINE L2 -620 2694 2560 211 200 238 0 chr3 134135551 134135631 -93388947 + MIR SINE MIR 151 249 -13 810 237 36 5 chr3 134136453 134136647 -93387931 + MIR SINE MIR 35 234 -28 803 263 72 0 chr3 134136808 134137044 -93387534 + MER102b DNA MER1_type 88 340 -1 366 250 188 7 chr3 134137303 134137447 -93387131 - MIR SINE MIR -47 215 46 26 0 0 0 chr3 134137770 134137796 -93386782 + AT_rich Low_complexity Low_complexity 1 26 0 599 290 54 0 chr3 134137928 134138114 -93386464 + MIR SINE MIR 60 255 -7 381 302 81 12 chr3 134138401 134138573 -93386005 - MIR SINE MIR 0 262 79 279 133 0 0 chr3 134138584 134138629 -93385949 + (TA)n Simple_repeat Simple_repeat 1 45 0 217 238 143 0 chr3 134138885 134138948 -93385630 + MIR SINE MIR 112 183 -79 248 360 102 7 chr3 134139189 134139336 -93385242 + MIR SINE MIR 92 252 -10 240 400 62 21 chr3 134139718 134139863 -93384715 + L2 LINE L2 3116 3266 -6 939 209 102 21 chr3 134140813 134141191 -93383387 + L1MD2 LINE L1 869 1293 -5250 * 1476 198 16 39 chr3 134141179 134141542 -93383036 + L1MB7 LINE L1 5812 6166 -18 793 229 139 0 chr3 134141589 134141834 -93382744 + L1MD2 LINE L1 1322 1600 -4940 * 1653 209 119 29 chr3 134141827 134142421 -93382157 + L1MD2 LINE L1 1842 2489 -4051 4746 217 66 30 chr3 134142431 134143662 -93380916 + L1MD2 LINE L1 3722 4908 -1845 189 0 0 0 chr3 134143662 134143683 -93380895 + (CA)n Simple_repeat Simple_repeat 2 22 0 4746 217 66 30 chr3 134143683 134144283 -93380295 + L1MD2 LINE L1 4908 5485 -1268 1900 152 27 39 chr3 134144283 134144691 -93379887 + L1MA3 LINE L1 5900 6302 -3 4746 217 66 30 chr3 134144691 134145358 -93379220 + L1MD2 LINE L1 5485 6496 -257 889 208 87 9 chr3 134145358 134145589 -93378989 + L1ME1 LINE L1 5916 6164 -2 23 54 0 0 chr3 134145710 134145747 -93378831 + AT_rich Low_complexity Low_complexity 1 37 0 1051 189 79 0 chr3 134145747 134145975 -93378603 + L1MD2 LINE L1 6495 6740 -13 344 306 50 0 chr3 134146053 134146174 -93378404 - L2 LINE L2 -10 3303 3177 26 0 0 0 chr3 134146281 134146307 -93378271 + AT_rich Low_complexity Low_complexity 1 26 0 21 71 0 0 chr3 134146391 134146433 -93378145 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr3 134147219 134147242 -93377336 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 71 chr3 134148041 134148083 -93376495 + AT_rich Low_complexity Low_complexity 1 39 0 287 228 13 38 chr3 134149543 134149701 -93374877 + (TA)n Simple_repeat Simple_repeat 1 154 0 2186 21 4 0 chr3 134150081 134150324 -93374254 + SVA Other Other 1142 1385 -1 308 135 23 17 chr3 134150327 134150357 -93374221 + L1P LINE L1 5291 5319 -836 2312 71 0 20 chr3 134150357 134150653 -93373925 + AluY SINE Alu 1 290 -21 308 135 23 17 chr3 134150653 134150704 -93373874 + L1P LINE L1 5319 5373 -782 2435 77 0 10 chr3 134150704 134151016 -93373562 + AluY SINE Alu 1 309 -2 2002 154 0 7 chr3 134151016 134151322 -93373256 + AluSg SINE Alu 1 304 -6 2344 100 6 3 chr3 134151324 134151635 -93372943 + AluSx SINE Alu 1 312 0 1473 164 24 27 chr3 134152099 134152392 -93372186 - AluJb SINE Alu -14 298 7 1275 154 47 53 chr3 134152487 134152786 -93371792 - AluJo SINE Alu -15 297 1 228 210 161 0 chr3 134154536 134154598 -93369980 + L2 LINE L2 3241 3312 -1 1607 228 39 32 chr3 134155766 134156227 -93368351 - LTR16B LTR ERVL 0 464 1 390 246 134 0 chr3 134156354 134156496 -93368082 - MIR SINE MIR -26 236 76 381 304 79 54 chr3 134156862 134157102 -93367476 - L2 LINE L2 0 3272 3027 337 298 139 13 chr3 134157185 134157343 -93367235 - MIR SINE MIR -18 244 67 490 290 49 44 chr3 134158412 134158595 -93365983 + MIR SINE MIR 17 200 -62 440 177 73 21 chr3 134158604 134158700 -93365878 - MER99 DNA DNA -1 827 727 23 33 0 0 chr3 134158978 134159008 -93365570 + AT_rich Low_complexity Low_complexity 1 30 0 421 193 11 11 chr3 134159435 134159523 -93365055 + MER99 DNA DNA 192 279 -549 * 794 214 45 17 chr3 134159492 134159763 -93364815 + MER99 DNA DNA 381 707 -121 231 354 112 75 chr3 134160246 134160684 -93363894 + L2 LINE L2 2807 3260 -12 674 171 109 22 chr3 134161008 134161217 -93363361 + AluJo SINE Alu 1 289 -23 494 72 54 9 chr3 134161218 134161329 -93363249 + GA-rich Low_complexity Low_complexity 1 116 0 293 280 56 19 chr3 134161389 134161496 -93363082 + MIR3 SINE MIR 92 202 -6 975 185 0 17 chr3 134162427 134162605 -93361973 + FRAM SINE Alu 1 175 -1 279 271 50 66 chr3 134162605 134162922 -93361656 + L1MEd LINE L1 945 1256 -4863 358 280 71 12 chr3 134163017 134163185 -93361393 + HAL1 LINE L1 1489 1644 -863 241 291 53 13 chr3 134163421 134163572 -93361006 + L1MEd LINE L1 1023 1179 -4940 42866 33 21 1 chr3 134163818 134169846 -93354732 + L1PA2 LINE L1 2 6153 -2 293 0 0 26 chr3 134169903 134169941 -93354637 + (TAAA)n Simple_repeat Simple_repeat 2 38 0 25 0 0 0 chr3 134170159 134170184 -93354394 + AT_rich Low_complexity Low_complexity 1 25 0 400 320 26 16 chr3 134170207 134170401 -93354177 + L1MEd LINE L1 2409 2604 -3525 1364 306 58 13 chr3 134170460 134170911 -93353667 + L2 LINE L2 2842 3312 -1 508 326 138 0 chr3 134171076 134171300 -93353278 - MIR SINE MIR -7 255 1 354 289 97 50 chr3 134171404 134171746 -93352832 + L1MEd LINE L1 3461 3818 -2311 229 179 18 18 chr3 134171772 134171828 -93352750 - MER20 DNA MER1_type -22 197 142 1921 146 58 0 chr3 134171849 134171984 -93352594 - L1MA9 LINE L1 -5 6307 6181 180 0 0 0 chr3 134171984 134172004 -93352574 + (TG)n Simple_repeat Simple_repeat 1 20 0 1921 146 58 0 chr3 134172004 134172230 -93352348 - L1MA9 LINE L1 -131 6181 5925 1222 147 17 59 chr3 134172230 134172415 -93352163 - MLT1A1 LTR MaLR 0 365 191 2762 166 40 0 chr3 134172415 134172867 -93351711 + MER70A LTR ERVL 3 472 0 1222 147 17 59 chr3 134172867 134172919 -93351659 - MLT1A1 LTR MaLR -174 191 138 722 249 51 34 chr3 134172919 134173156 -93351422 - L1MC4 LINE L1 -169 7873 7633 916 42 84 0 chr3 134173161 134173280 -93351298 - MER85 DNA T2_type 0 139 11 1725 203 214 6 chr3 134173328 134173801 -93350777 - L1MC4 LINE L1 -527 7515 6945 21 36 0 0 chr3 134173912 134173940 -93350638 + AT_rich Low_complexity Low_complexity 1 28 0 213 94 0 0 chr3 134176609 134176641 -93347937 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 21 0 0 0 chr3 134176834 134176855 -93347723 + AT_rich Low_complexity Low_complexity 1 21 0 199 424 16 16 chr3 134177434 134177559 -93347019 + MIR3 SINE MIR 1 125 -83 434 243 10 10 chr3 134177561 134177664 -93346914 + MER94 DNA DNA 1 103 -31 300 351 54 16 chr3 134178782 134178967 -93345611 + MIR3 SINE MIR 6 197 -11 1914 227 65 5 chr3 134180242 134180810 -93343768 + L1MB7 LINE L1 4420 5021 -1125 1755 213 75 31 chr3 134180856 134181312 -93343266 + L1MB7 LINE L1 5624 6107 -77 2349 68 10 3 chr3 134181312 134181607 -93342971 - AluY SINE Alu -14 297 1 1755 213 75 31 chr3 134181607 134181671 -93342907 + L1MB7 LINE L1 6107 6167 -17 342 286 45 45 chr3 134182795 134182928 -93341650 + MIR SINE MIR 50 182 -80 210 191 0 0 chr3 134183045 134183087 -93341491 + (TA)n Simple_repeat Simple_repeat 1 42 0 439 278 102 45 chr3 134183091 134183267 -93341311 - MIR SINE MIR -68 194 9 970 340 99 34 chr3 134183443 134184435 -93340143 + L2 LINE L2 1492 2547 -767 197 305 84 21 chr3 134184530 134184625 -93339953 + L2 LINE L2 2971 3071 -201 267 79 0 0 chr3 134184804 134184842 -93339736 + (TA)n Simple_repeat Simple_repeat 1 38 0 315 167 0 0 chr3 134184869 134184935 -93339643 + (TA)n Simple_repeat Simple_repeat 1 66 0 273 263 0 21 chr3 134184941 134185036 -93339542 - L1MC4 LINE L1 -1336 6706 6614 2265 120 0 0 chr3 134185799 134186098 -93338480 + AluSx SINE Alu 1 299 -13 222 236 0 0 chr3 134187616 134187671 -93336907 + (TG)n Simple_repeat Simple_repeat 2 56 0 502 204 88 122 chr3 134187870 134188051 -93336527 + MER102a DNA MER1_type 155 329 -1 2458 248 58 20 chr3 134188410 134188868 -93335710 + L1ME1 LINE L1 2384 2823 -3323 2342 102 0 0 chr3 134188868 134189163 -93335415 + AluSx SINE Alu 1 295 -17 2458 248 58 20 chr3 134189163 134189640 -93334938 + L1ME1 LINE L1 2823 3354 -2792 3290 240 68 36 chr3 134189657 134191726 -93332852 + L1ME1 LINE L1 4021 6162 -4 312 325 50 84 chr3 134191739 134192203 -93332375 - LTR67 LTR ERVL -74 483 36 450 0 0 0 chr3 134194032 134194082 -93330496 + (CA)n Simple_repeat Simple_repeat 2 51 0 420 192 84 0 chr3 134194332 134194467 -93330111 - MIR SINE MIR -13 249 102 396 294 153 12 chr3 134194557 134194727 -93329851 + MIR SINE MIR 56 249 -13 26 0 0 0 chr3 134195311 134195337 -93329241 + AT_rich Low_complexity Low_complexity 1 26 0 297 51 0 0 chr3 134195766 134195805 -93328773 + (CA)n Simple_repeat Simple_repeat 2 40 0 215 231 0 0 chr3 134196021 134196060 -93328518 + polypurine Low_complexity Low_complexity 2 40 0 614 39 0 0 chr3 134196404 134196481 -93328097 + AluY SINE Alu 1 77 -233 1367 233 36 36 chr3 134197170 134197586 -93326992 - L1ME3A LINE L1 -14 6156 5741 236 197 121 45 chr3 134197580 134197646 -93326932 + L1ME LINE L1 5578 5648 -514 * 2419 52 0 23 chr3 134198258 134198563 -93326015 + AluY SINE Alu 1 298 -13 180 0 0 0 chr3 134198899 134198919 -93325659 + (A)n Simple_repeat Simple_repeat 1 20 0 246 311 95 68 chr3 134199193 134199376 -93325202 - MIR SINE MIR -56 206 16 345 121 15 15 chr3 134200241 134200307 -93324271 + L1ME3A LINE L1 5911 5976 -194 823 197 174 0 chr3 134200606 134200784 -93323794 + MER3 DNA MER1_type 1 209 0 256 293 0 13 chr3 134201146 134201221 -93323357 - MIR SINE MIR 0 262 189 1018 181 6 0 chr3 134201223 134201405 -93323173 + MER2 DNA MER2_type 8 190 -155 499 182 0 0 chr3 134201451 134201528 -93323050 + MER2 DNA MER2_type 269 345 0 4029 130 49 1 chr3 134201536 134202189 -93322389 - Tigger1 DNA MER2_type 0 2418 1735 5882 100 12 16 chr3 134202478 134204005 -93320573 - L1PB1 LINE L1 0 6151 4631 1398 111 65 0 chr3 134204005 134204221 -93320357 - Tigger1 DNA MER2_type -698 1720 1491 310 51 0 0 chr3 134204266 134204305 -93320273 - Tigger1 DNA MER2_type -1784 634 596 426 184 0 0 chr3 134204307 134204383 -93320195 - Tigger1 DNA MER2_type -935 1483 1408 3694 76 19 29 chr3 134204419 134204790 -93319788 + L1PB1 LINE L1 5426 5792 -359 426 39 0 0 chr3 134204790 134204842 -93319736 + (CA)n Simple_repeat Simple_repeat 2 53 0 3694 76 19 29 chr3 134204842 134204996 -93319582 + L1PB1 LINE L1 5792 5946 -205 354 171 65 0 chr3 134204995 134205086 -93319492 - L1 LINE L1 -1096 5050 4955 * 8641 133 15 33 chr3 134205086 134206517 -93318061 - Tigger1 DNA MER2_type -1011 1407 2 1628 199 114 40 chr3 134206521 134206963 -93317615 - MLT2B1 LTR ERVL -38 457 6 438 279 64 0 chr3 134206975 134207115 -93317463 - L1M4 LINE L1 -2658 3488 3340 2320 66 13 3 chr3 134209341 134209646 -93314932 + AluY SINE Alu 1 308 -3 510 312 27 4 chr3 134209729 134209932 -93314646 + L1ME LINE L1 5572 5768 -353 254 234 124 35 chr3 134210165 134210310 -93314268 - L1ME4a LINE L1 -23 6098 5941 1363 259 108 34 chr3 134211240 134211769 -93312809 + MER97a DNA MER1_type? 1 568 -326 449 190 66 22 chr3 134211910 134212074 -93312504 + MER97b DNA MER1_type? 908 1053 0 295 354 133 32 chr3 134212080 134212583 -93311995 - L2 LINE L2 -898 2416 1863 622 272 40 12 chr3 134212677 134212850 -93311728 + MER5A DNA MER1_type 12 189 0 206 268 0 42 chr3 134212850 134212902 -93311676 + MIR3 SINE MIR 156 204 -4 209 283 0 33 chr3 134213566 134213626 -93310952 - MIR3 SINE MIR -15 193 136 215 225 0 50 chr3 134215530 134215610 -93308968 + A-rich Low_complexity Low_complexity 5 80 0 425 259 120 36 chr3 134215807 134215984 -93308594 - MIR SINE MIR -51 211 19 225 200 0 0 chr3 134216763 134216808 -93307770 + (TA)n Simple_repeat Simple_repeat 1 45 0 198 268 0 0 chr3 134217201 134217242 -93307336 + L2 LINE L2 3010 3050 -222 190 399 56 28 chr3 134218572 134218715 -93305863 - L2 LINE L2 -3 3269 3123 27 0 0 0 chr3 134218762 134218789 -93305789 + AT_rich Low_complexity Low_complexity 1 27 0 2260 95 0 3 chr3 134221097 134221401 -93303177 + AluSg1 SINE Alu 1 303 -6 196 260 34 103 chr3 134221926 134222072 -93302506 + L2 LINE L2 3102 3237 -76 1922 80 18 14 chr3 134223426 134223701 -93300877 + L1PA10 LINE L1 5893 6168 0 3284 96 19 4 chr3 134225138 134225608 -93298970 + L1PA16 LINE L1 5689 6165 -1 202 300 169 39 chr3 134225810 134225940 -93298638 + L2 LINE L2 2319 2465 -849 190 266 89 13 chr3 134226433 134226512 -93298066 + L3 LINE CR1 1362 1446 -131 6693 198 59 37 chr3 134227009 134229008 -93295570 + L1MA4A LINE L1 8 2274 -4575 5425 155 39 20 chr3 134228996 134230398 -93294180 + L1MA4A LINE L1 5583 6998 -7 * 4872 164 37 21 chr3 134230695 134230737 -93293841 - MER54A LTR ERVL 0 901 861 1864 131 40 11 chr3 134230737 134231037 -93293541 - AluSx SINE Alu 0 308 1 4872 164 37 21 chr3 134231037 134231880 -93292698 - MER54A LTR ERVL -40 861 1 341 285 19 38 chr3 134232577 134232735 -93291843 - MLT1J1 LTR MaLR -291 155 1 705 229 63 23 chr3 134232782 134232957 -93291621 - MIR SINE MIR -55 207 26 268 300 0 12 chr3 134233004 134233084 -93291494 + L3 LINE CR1 1248 1326 -251 623 302 89 9 chr3 134233120 134233345 -93291233 - MIR SINE MIR -19 243 1 26 30 0 0 chr3 134233400 134233433 -93291145 + AT_rich Low_complexity Low_complexity 1 33 0 238 269 46 74 chr3 134233902 134234010 -93290568 + L3 LINE CR1 1366 1470 -107 23 33 0 0 chr3 134234635 134234665 -93289913 + AT_rich Low_complexity Low_complexity 1 30 0 729 343 117 32 chr3 134235019 134235713 -93288865 + L2 LINE L2 2224 2976 -338 227 261 369 18 chr3 134235868 134235979 -93288599 + L2 LINE L2 3123 3272 0 339 297 133 16 chr3 134237895 134238023 -93286555 - MIR3 SINE MIR -23 185 43 194 245 57 0 chr3 134238620 134238673 -93285905 - L2 LINE L2 -1 3271 3216 787 191 87 71 chr3 134238812 134238932 -93285646 + MER5C DNA MER1_type 1 118 -206 2334 68 3 10 chr3 134238932 134239228 -93285350 - AluY SINE Alu -17 294 1 787 191 87 71 chr3 134239228 134239359 -93285219 + MER5C DNA MER1_type 118 256 -68 421 347 121 28 chr3 134239460 134239947 -93284631 - L2 LINE L2 -219 3053 2523 3139 186 84 29 chr3 134242305 134242528 -93282050 + L1MB8 LINE L1 5071 5280 -898 1695 168 0 8 chr3 134242528 134242796 -93281782 + AluJo SINE Alu 11 276 -36 3139 186 84 29 chr3 134242796 134243611 -93280967 + L1MB8 LINE L1 5280 6166 -12 1647 176 0 4 chr3 134243949 134244211 -93280367 + AluJb SINE Alu 1 261 -51 215 360 108 39 chr3 134244485 134244791 -93279787 - L2 LINE L2 -339 2975 2649 2078 86 18 4 chr3 134245212 134245522 -93279056 - AluY SINE Alu 0 314 1 1031 102 0 0 chr3 134245525 134245652 -93278926 - AluSq/x SINE Alu -180 133 7 870 265 121 43 chr3 134245718 134246156 -93278422 + L2 LINE L2 2310 2781 -533 2349 79 20 0 chr3 134246168 134246473 -93278105 - AluY SINE Alu 0 311 1 27 29 0 0 chr3 134247650 134247684 -93276894 + AT_rich Low_complexity Low_complexity 1 34 0 491 207 60 0 chr3 134248439 134248555 -93276023 + L1MC/D LINE L1 5682 5804 -2004 204 40 0 0 chr3 134249635 134249660 -93274918 + (T)n Simple_repeat Simple_repeat 1 25 0 2044 266 65 92 chr3 134249702 134251002 -93273576 + L2 LINE L2 2038 3301 -12 40709 33 23 1 chr3 134251045 134257065 -93267513 - L1PA2 LINE L1 0 6155 1 231 330 22 11 chr3 134257559 134257650 -93266928 - MIR3 SINE MIR -9 199 108 184 309 191 0 chr3 134258030 134258140 -93266438 - L2 LINE L2 -1220 2094 1964 1170 161 86 89 chr3 134258259 134258620 -93265958 + MLT2D LTR ERVL 1 360 -54 216 97 0 0 chr3 134258626 134258657 -93265921 + (CA)n Simple_repeat Simple_repeat 2 32 0 1947 126 70 22 chr3 134258897 134259255 -93265323 + THE1C LTR MaLR 1 375 0 21 71 0 0 chr3 134259541 134259583 -93264995 + AT_rich Low_complexity Low_complexity 1 42 0 1357 216 34 12 chr3 134259934 134260388 -93264190 + MLT2B1 LTR ERVL 2 520 0 784 294 65 18 chr3 134260608 134261009 -93263569 + L1ME LINE L1 20 439 -5631 713 294 81 37 chr3 134261066 134261501 -93263077 + L1ME LINE L1 242 695 -5375 225 0 0 0 chr3 134261520 134261545 -93263033 + (TG)n Simple_repeat Simple_repeat 2 26 0 348 311 177 23 chr3 134262362 134262667 -93261911 + L2 LINE L2 2614 2965 -349 270 253 11 81 chr3 134263142 134263229 -93261349 - L2 LINE L2 -4 3309 3229 358 253 187 7 chr3 134263286 134263436 -93261142 - MIR3 SINE MIR -31 177 1 310 333 0 0 chr3 134264204 134264279 -93260299 + MIR SINE MIR 47 121 -87 376 258 0 31 chr3 134265223 134265320 -93259258 + L2 LINE L2 3220 3313 0 1821 167 32 15 chr3 134266748 134267090 -93257488 - MER7A DNA MER2_type 0 346 1 1684 95 5 0 chr3 134267345 134267567 -93257011 - AluSp SINE Alu -1 312 90 294 330 85 0 chr3 134268197 134268315 -93256263 + MIR SINE MIR 120 247 -15 1831 200 28 6 chr3 134269408 134269763 -93254815 + MLT1A1 LTR MaLR 1 363 -2 232 340 64 14 chr3 134271051 134271192 -93253386 - L2 LINE L2 0 3313 3166 464 293 47 34 chr3 134271201 134271498 -93253080 + L1ME LINE L1 4941 5241 -905 2206 154 41 9 chr3 134271586 134272022 -93252556 + L1MB4 LINE L1 5725 6174 -6 429 169 12 0 chr3 134272033 134272116 -93252462 + L1MB8 LINE L1 6089 6172 -6 1041 244 57 59 chr3 134272116 134272539 -93252039 + L1ME LINE L1 5315 5736 -434 2405 93 0 3 chr3 134272554 134272867 -93251711 + AluSx SINE Alu 1 312 0 26 0 0 0 chr3 134274580 134274606 -93249972 + AT_rich Low_complexity Low_complexity 1 26 0 465 260 91 0 chr3 134274826 134274980 -93249598 - MIR3 SINE MIR -3 205 38 472 304 72 51 chr3 134275007 134275244 -93249334 - MIR SINE MIR 0 262 21 316 283 62 15 chr3 134275328 134275547 -93249031 + L1ME LINE L1 5619 5824 -297 1181 53 0 0 chr3 134275563 134275696 -93248882 + AluSg SINE Alu 1 133 -177 5400 201 62 24 chr3 134275935 134277333 -93247245 + Charlie1a DNA MER1_type 1 1451 -4 22 56 0 0 chr3 134278381 134278417 -93246161 + AT_rich Low_complexity Low_complexity 1 36 0 757 214 24 24 chr3 134278420 134278626 -93245952 + L1MD2 LINE L1 6154 6359 0 190 191 119 71 chr3 134278673 134278757 -93245821 - L2 LINE L2 -5 3267 3180 243 0 0 0 chr3 134278757 134278784 -93245794 + (CA)n Simple_repeat Simple_repeat 1 27 0 342 0 0 0 chr3 134278812 134278850 -93245728 + (CA)n Simple_repeat Simple_repeat 2 39 0 206 236 0 18 chr3 134278852 134278907 -93245671 + GA-rich Low_complexity Low_complexity 1 54 0 2079 124 0 0 chr3 134280549 134280855 -93243723 + AluSq SINE Alu 1 306 0 206 214 36 0 chr3 134281627 134281683 -93242895 + A-rich Low_complexity Low_complexity 4 61 0 238 304 108 55 chr3 134282089 134282512 -93242066 + L2 LINE L2 2811 3312 -1 377 297 94 97 chr3 134283909 134284653 -93239925 + L1M4 LINE L1 678 1419 -5430 263 209 0 86 chr3 134286845 134286950 -93237628 - MIR SINE MIR -46 216 121 1019 270 111 27 chr3 134288585 134288712 -93235866 + L2 LINE L2 2657 2772 -541 2066 161 102 32 chr3 134288712 134289183 -93235395 - MLT1D LTR MaLR -1 504 1 1019 270 111 27 chr3 134289183 134289408 -93235170 + L2 LINE L2 2772 2977 -336 5426 64 10 6 chr3 134289408 134290094 -93234484 + LTR8 LTR ERV1 1 689 -2 1019 270 111 27 chr3 134290094 134290338 -93234240 + L2 LINE L2 2977 3313 0 1107 292 90 24 chr3 134290344 134290874 -93233704 + L1M4 LINE L1 3440 3934 -2914 2165 137 3 10 chr3 134290874 134291187 -93233391 + AluSx SINE Alu 1 311 -1 1107 292 90 24 chr3 134291187 134291750 -93232828 + L1M4 LINE L1 3934 4613 -2235 * 3472 157 129 7 chr3 134291745 134292466 -93232112 + L1PB1 LINE L1 384 1192 -5671 1829 102 78 3 chr3 134292466 134292749 -93231829 - LTR17 LTR ERV1 0 780 477 * 2286 67 35 0 chr3 134292737 134293052 -93231526 - LTR17 LTR ERV1 -453 327 2 9052 122 32 13 chr3 134293052 134294696 -93229882 + L1PB1 LINE L1 1188 2920 -3942 40365 38 22 2 chr3 134294707 134300768 -93223810 + L1PA3 LINE L1 3 6155 0 10325 176 48 61 chr3 134300763 134301772 -93222806 + L1PB1 LINE L1 2918 3938 -2929 * 1447 141 0 0 chr3 134301772 134301971 -93222607 + AluSx SINE Alu 1 199 -113 10325 176 48 61 chr3 134301971 134304395 -93220183 + L1PB1 LINE L1 3938 6498 -369 4020 58 2 0 chr3 134304397 134304927 -93219651 + L1PA4 LINE L1 632 1162 -4984 24445 37 0 0 chr3 134304927 134308709 -93215869 + L1PA4 LINE L1 2371 6152 -3 2254 107 16 29 chr3 134308720 134308754 -93215824 + L1PB1 LINE L1 6485 6518 -349 266 0 29 0 chr3 134308754 134308788 -93215790 + (CA)n Simple_repeat Simple_repeat 1 35 0 2254 107 16 29 chr3 134308788 134309136 -93215442 + L1PB1 LINE L1 6518 6862 -5 327 283 73 36 chr3 134309565 134309784 -93214794 + LTR67 LTR ERVL 325 551 -6 575 295 24 51 chr3 134310056 134310310 -93214268 - MIR SINE MIR -5 257 11 306 305 23 8 chr3 134311161 134311292 -93213286 + LTR16C LTR ERVL 359 491 0 445 291 78 28 chr3 134311525 134311704 -93212874 + MIR SINE MIR 51 238 -24 356 335 40 17 chr3 134312615 134312791 -93211787 - L2 LINE L2 -16 3297 3118 183 42 0 0 chr3 134313039 134313063 -93211515 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2555 279 82 28 chr3 134313716 134315085 -93209493 - L1M4 LINE L1 -1072 5074 3603 2206 131 0 0 chr3 134315085 134315397 -93209181 + AluSx SINE Alu 1 312 0 2555 279 82 28 chr3 134315397 134315639 -93208939 - L1M4 LINE L1 -2543 3603 3376 400 191 163 57 chr3 134315742 134315883 -93208695 - MLT1D LTR MaLR -349 156 1 409 289 85 35 chr3 134315883 134316087 -93208491 - L1ME LINE L1 -4826 1389 1197 593 220 70 45 chr3 134316087 134316287 -93208291 - MER63A DNA MER1_type -1 209 5 409 289 85 35 chr3 134316287 134316694 -93207884 - L1ME LINE L1 -5018 1197 798 184 256 0 0 chr3 134317564 134317607 -93206971 - MER5B DNA MER1_type -135 43 1 391 272 71 24 chr3 134317825 134317994 -93206584 - MLT1J LTR MaLR -334 177 1 2508 74 0 6 chr3 134318491 134318802 -93205776 - AluY SINE Alu -2 309 1 228 251 360 11 chr3 134319536 134319711 -93204867 - MIR SINE MIR -6 256 21 3287 181 20 22 chr3 134320818 134321581 -93202997 - L1M4 LINE L1 -908 5238 4478 212 312 32 32 chr3 134321842 134321935 -93202643 - MIR SINE MIR -158 104 12 4835 92 20 132 chr3 134321988 134322913 -93201665 - LTR12 LTR ERV1 0 826 5 2363 174 25 38 chr3 134322929 134323540 -93201038 - pTR5 LTR ERV1 -1094 1344 742 11152 185 11 36 chr3 134323546 134324165 -93200413 + L1PA15 LINE L1 2443 3076 -3089 2244 89 10 0 chr3 134324165 134324456 -93200122 + AluY SINE Alu 18 311 0 11152 185 11 36 chr3 134324456 134325377 -93199201 + L1PA15 LINE L1 3076 4019 -2146 7317 43 1 8 chr3 134325377 134327002 -93197576 + L1PA5 LINE L1 4533 6151 -3 361 53 53 0 chr3 134327002 134327055 -93197523 + L1MA6 LINE L1 6241 6300 0 11152 185 11 36 chr3 134327055 134328650 -93195928 + L1PA15 LINE L1 4018 5473 -692 2308 98 0 16 chr3 134328650 134328956 -93195622 + AluSq SINE Alu 1 301 -12 11152 185 11 36 chr3 134328956 134329632 -93194946 + L1PA15 LINE L1 5473 6165 0 271 311 17 22 chr3 134330737 134330917 -93193661 + CT-rich Low_complexity Low_complexity 1 179 0 421 305 39 8 chr3 134331166 134331294 -93193284 + MIR3 SINE MIR 54 185 -23 1364 160 112 35 chr3 134332686 134332973 -93191605 - AluJb SINE Alu -1 311 3 417 20 0 0 chr3 134333077 134333127 -93191451 + (CA)n Simple_repeat Simple_repeat 1 50 0 3026 152 42 0 chr3 134333130 134333678 -93190900 + Tigger3b DNA MER2_type 2 572 -659 761 326 63 48 chr3 134333690 134334291 -93190287 + L1PA16 LINE L1 788 1397 -6177 245 343 0 0 chr3 134334412 134334511 -93190067 + L1PA16 LINE L1 2084 2182 -5399 12799 208 28 31 chr3 134334747 134335387 -93189191 + L1PA16 LINE L1 2182 2823 -4781 2020 108 113 17 chr3 134335387 134335731 -93188847 - MER51B LTR ERV1 0 377 1 12799 208 28 31 chr3 134335731 134336726 -93187852 + L1PA16 LINE L1 2823 3820 -3784 4096 86 19 9 chr3 134336726 134336946 -93187632 + L1PB1 LINE L1 5564 5780 -371 447 19 0 0 chr3 134336946 134336998 -93187580 + (CA)n Simple_repeat Simple_repeat 2 53 0 4096 86 19 9 chr3 134336998 134337354 -93187224 + L1PB1 LINE L1 5780 6149 -2 12799 208 28 31 chr3 134337354 134339316 -93185262 + L1PA16 LINE L1 3820 5784 -1820 2040 155 0 0 chr3 134339316 134339626 -93184952 + AluSx SINE Alu 1 310 -2 12799 208 28 31 chr3 134339626 134341432 -93183146 + L1PA16 LINE L1 5784 7594 -10 436 126 0 36 chr3 134341438 134341549 -93183029 + Tigger3b DNA MER2_type 557 663 -569 998 163 0 6 chr3 134341585 134341745 -93182833 - AluSg/x SINE Alu -13 296 138 2917 117 34 86 chr3 134341745 134341901 -93182677 + Tigger3b DNA MER2_type 649 812 -2216 1981 139 23 0 chr3 134341901 134342202 -93182376 - AluSx SINE Alu -4 308 1 2917 117 34 86 chr3 134342202 134342660 -93181918 + Tigger3b DNA MER2_type 812 1231 0 1388 178 2 63 chr3 134344048 134344474 -93180104 - L1PA16 LINE L1 -78 6088 5689 2341 94 0 0 chr3 134345597 134345896 -93178682 - AluSq SINE Alu -12 301 3 1395 238 62 23 chr3 134346431 134346864 -93177714 - LTR40c LTR ERVL -5 460 11 206 417 108 8 chr3 134346905 134346973 -93177605 + L2 LINE L2 3115 3175 -97 225 0 0 0 chr3 134346973 134346998 -93177580 + (TTTA)n Simple_repeat Simple_repeat 4 28 0 206 417 108 8 chr3 134346998 134347049 -93177529 + L2 LINE L2 3175 3246 -26 344 232 10 0 chr3 134347245 134347344 -93177234 + (TA)n Simple_repeat Simple_repeat 2 101 0 583 187 64 80 chr3 134347947 134348134 -93176444 - MLT1E2 LTR MaLR -442 184 1 1810 146 13 50 chr3 134348727 134349028 -93175550 - AluJb SINE Alu -22 290 1 777 299 43 16 chr3 134349067 134349321 -93175257 + MIR SINE MIR 1 261 -1 291 262 126 19 chr3 134349392 134349495 -93175083 + L2 LINE L2 3159 3272 0 186 374 35 17 chr3 134350579 134350694 -93173884 - L2 LINE L2 -455 2859 2743 478 229 0 0 chr3 134350752 134350848 -93173730 - Tigger7 DNA MER2_type -3 2484 2389 * 1466 195 23 0 chr3 134350846 134351107 -93173471 - Tigger7 DNA MER2_type -2220 267 1 213 381 42 54 chr3 134351109 134351369 -93173209 - L2 LINE L2 -634 2680 2424 293 265 61 31 chr3 134351584 134351682 -93172896 + MIR3 SINE MIR 98 198 -10 410 335 76 13 chr3 134351881 134352105 -93172473 + L2 LINE L2 2392 2629 -685 2142 117 3 7 chr3 134352156 134352454 -93172124 + AluSp SINE Alu 1 297 -16 337 293 20 7 chr3 134352541 134352688 -93171890 - L1MC/D LINE L1 -2017 5791 5643 767 284 116 21 chr3 134352933 134353461 -93171117 - HAL1b LINE L1 -494 854 277 2524 66 0 0 chr3 134353926 134354227 -93170351 - AluY SINE Alu -10 301 1 400 333 66 52 chr3 134355025 134355413 -93169165 + L2 LINE L2 2611 3019 -253 665 292 40 5 chr3 134355437 134355639 -93168939 - MIR SINE MIR -26 236 28 1558 104 33 12 chr3 134355946 134356187 -93168391 + AluSx SINE Alu 64 309 -3 1430 226 28 21 chr3 134356187 134356718 -93167860 + L1M4 LINE L1 2784 3318 -2828 378 134 18 65 chr3 134356843 134356931 -93167647 + L1M3 LINE L1 5670 5756 -544 2581 56 0 0 chr3 134357112 134357415 -93167163 + AluY SINE Alu 1 303 -8 2251 226 65 16 chr3 134357512 134358429 -93166149 + L1M4 LINE L1 1064 2321 -4325 9914 101 1 4 chr3 134358546 134359935 -93164643 - THE1B-int LTR MaLR -194 1386 1 2444 93 14 19 chr3 134359935 134360301 -93164277 - THE1B LTR MaLR 0 364 1 2432 202 90 102 chr3 134360302 134360877 -93163701 - MER31-int LTR ERV1 -1500 3436 2856 721 153 25 0 chr3 134360877 134360995 -93163583 + FLAM_C SINE Alu 2 122 -11 2432 202 90 102 chr3 134360995 134361838 -93162740 - MER31-int LTR ERV1 -2080 2856 2099 414 269 34 19 chr3 134361888 134362096 -93162482 - MER31-int LTR ERV1 -2978 1958 1748 1784 170 7 10 chr3 134362990 134363296 -93161282 + AluSx SINE Alu 1 305 -7 184 162 54 0 chr3 134363877 134363914 -93160664 + L3b LINE CR1 1282 1320 -263 1782 164 0 22 chr3 134364225 134364543 -93160035 + AluJb SINE Alu 1 311 -1 1402 127 0 25 chr3 134364842 134365079 -93159499 - THE1B LTR MaLR -133 231 1 287 257 177 26 chr3 134365230 134365343 -93159235 + L2 LINE L2 3183 3312 -1 189 0 0 0 chr3 134365506 134365527 -93159051 + (GGGAA)n Simple_repeat Simple_repeat 5 25 0 634 209 209 42 chr3 134365735 134365950 -93158628 + MIR SINE MIR 12 262 0 398 331 61 0 chr3 134365952 134366100 -93158478 - MIR SINE MIR -65 197 41 1985 126 41 0 chr3 134366505 134366798 -93157780 + AluSx SINE Alu 1 305 -7 219 114 0 0 chr3 134366798 134366833 -93157745 + (GA)n Simple_repeat Simple_repeat 1 35 0 1962 120 34 37 chr3 134366844 134367144 -93157434 + L1M1 LINE L1 2981 3280 -4285 4010 81 14 25 chr3 134367144 134367736 -93156842 + L1PA8A LINE L1 5542 6128 -3 1962 120 34 37 chr3 134367736 134368132 -93156446 + L1M1 LINE L1 3280 3872 -3693 247 293 17 0 chr3 134368139 134368197 -93156381 + AluS SINE Alu 10 68 -235 317 136 61 0 chr3 134368445 134368511 -93156067 + L1MB2 LINE L1 6007 6076 -95 289 156 0 31 chr3 134368569 134368633 -93155945 + L1MB2 LINE L1 6079 6140 -31 239 135 96 0 chr3 134368638 134368690 -93155888 + L1MB2 LINE L1 6113 6169 -2 268 146 98 24 chr3 134368726 134368808 -93155770 + L1MB1 LINE L1 6087 6174 -15 25 0 0 0 chr3 134369194 134369219 -93155359 + AT_rich Low_complexity Low_complexity 1 25 0 2172 126 3 7 chr3 134369351 134369660 -93154918 - AluSx SINE Alu -4 308 1 387 331 87 0 chr3 134370328 134370455 -93154123 - MIR SINE MIR -107 155 18 12097 78 10 15 chr3 134370617 134372447 -93152131 - L1P LINE L1 -2088 4058 2238 612 257 0 6 chr3 134372585 134372760 -93151818 - L1ME LINE L1 -637 5525 5352 2850 179 28 41 chr3 134372771 134374013 -93150565 - L1MA4 LINE L1 -250 5905 4711 1225 132 29 4 chr3 134374010 134374253 -93150325 - L1P LINE L1 -2790 3356 3108 * 204 268 36 0 chr3 134375268 134375324 -93149254 + CT-rich Low_complexity Low_complexity 3 60 0 195 202 67 90 chr3 134375385 134375474 -93149104 + L2 LINE L2 3138 3224 -48 7285 120 33 13 chr3 134376542 134377691 -93146887 + L1P3 LINE L1 47 1279 -4856 225 65 0 0 chr3 134377691 134377722 -93146856 + (CAA)n Simple_repeat Simple_repeat 3 33 0 7285 120 33 13 chr3 134377722 134377848 -93146730 + L1P3 LINE L1 1279 1401 -4734 334 278 93 0 chr3 134379140 134379248 -93145330 + MIR SINE MIR 145 262 0 656 190 25 31 chr3 134379924 134380087 -93144491 - AluY SINE Alu -146 165 4 782 209 94 0 chr3 134380477 134380668 -93143910 + MER3 DNA MER1_type 1 209 0 220 231 0 19 chr3 134380898 134380950 -93143628 + T-rich Low_complexity Low_complexity 4 54 0 383 236 0 34 chr3 134383284 134383373 -93141205 + L2 LINE L2 3226 3311 -2 437 238 63 7 chr3 134383502 134383645 -93140933 + LTR16A LTR ERVL 1 151 -299 370 282 20 13 chr3 134383683 134383832 -93140746 + LTR16A LTR ERVL 231 380 -70 5044 161 17 4 chr3 134384142 134385972 -93138606 - L1PB2 LINE L1 -95 6056 4209 216 313 0 31 chr3 134386648 134386712 -93137866 + L2 LINE L2 3210 3271 -1 572 176 0 9 chr3 134387092 134387200 -93137378 - AluSc SINE Alu -2 307 201 1929 301 153 28 chr3 134387707 134388844 -93135734 + L2 LINE L2 108 1386 -1928 4039 125 8 14 chr3 134388956 134389659 -93134919 + L1MA2 LINE L1 5606 6304 0 2463 172 21 27 chr3 134389678 134390624 -93133954 + L1M1 LINE L1 4810 5762 -541 743 259 23 73 chr3 134390773 134391049 -93133529 + MIR SINE MIR 2 261 -1 571 283 41 37 chr3 134391927 134392171 -93132407 - LTR9 LTR ERV1 -367 245 1 2047 234 37 34 chr3 134392179 134393136 -93131442 + L1M4 LINE L1 923 1882 -4764 10767 49 3 5 chr3 134393259 134394726 -93129852 - L1P LINE L1 -3795 2351 888 1586 138 0 21 chr3 134395043 134395326 -93129252 + AluY SINE Alu 20 296 -15 6172 175 169 3 chr3 134397983 134399352 -93125226 - L1M1 LINE L1 -5425 2140 545 1536 154 32 14 chr3 134399452 134399731 -93124847 + AluSx SINE Alu 25 308 -4 549 141 58 32 chr3 134399731 134399887 -93124691 - Tigger3(Golem) DNA MER2_type -424 2605 2446 998 163 0 6 chr3 134399887 134400047 -93124531 + AluSg/x SINE Alu 138 296 -13 414 135 0 36 chr3 134400084 134400195 -93124383 - Tigger3(Golem) DNA MER2_type -570 2459 2353 2177 191 27 37 chr3 134400201 134400797 -93123781 - L1PA16 LINE L1 -10 6156 5567 5702 143 7 29 chr3 134400996 134402093 -93122485 + L1P LINE L1 695 1767 -4379 1660 191 35 5 chr3 134402207 134402583 -93121995 + L1M4 LINE L1 2715 3101 -3543 5612 154 26 13 chr3 134402588 134404133 -93120445 + L1M1 LINE L1 4200 5766 -536 1250 197 46 48 chr3 134404323 134404875 -93119703 + L1M4c LINE L1 2253 2793 -3589 963 166 12 0 chr3 134404875 134405038 -93119540 - AluJb SINE Alu -19 293 129 1732 191 53 14 chr3 134405045 134405531 -93119047 + L1M4c LINE L1 2788 3292 -3090 278 174 0 0 chr3 134405845 134405891 -93118687 - L2 LINE L2 -7 3306 3261 45 98 0 0 chr3 134407032 134407175 -93117403 + AT_rich Low_complexity Low_complexity 1 143 0 207 164 15 60 chr3 134407199 134407266 -93117312 + (CATATA)n Simple_repeat Simple_repeat 2 65 0 628 262 42 33 chr3 134407597 134407811 -93116767 - MIR SINE MIR -13 249 34 1142 293 49 21 chr3 134408261 134409063 -93115515 - L1M4 LINE L1 -2434 3712 2889 1003 238 33 13 chr3 134409073 134409372 -93115206 + MER68 LTR ERV1 3 307 -255 1326 265 107 28 chr3 134409652 134410120 -93114458 + MLT1D LTR MaLR 1 505 0 529 274 172 0 chr3 134410201 134410387 -93114191 + MIR SINE MIR 31 248 -14 240 100 0 0 chr3 134410449 134410489 -93114089 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 2144 26 0 4 chr3 134410489 134410753 -93113825 - L1PA4 LINE L1 -24 6131 5869 5112 68 3 6 chr3 134410898 134412116 -93112462 - L1PA4 LINE L1 -198 5957 4745 319 243 63 27 chr3 134412280 134412391 -93112187 - L2 LINE L2 -2 3311 3197 1177 156 43 24 chr3 134412718 134412929 -93111649 + AluJo SINE Alu 87 301 -11 2512 77 0 13 chr3 134412932 134413245 -93111333 + AluSc SINE Alu 1 309 0 278 311 156 44 chr3 134413267 134413402 -93111176 - L2 LINE L2 0 3272 3123 1433 158 57 74 chr3 134413924 134414010 -93110568 - MLT2C2 LTR ERVL -78 386 300 2320 53 10 3 chr3 134414010 134414309 -93110269 - AluY SINE Alu -10 301 1 1933 82 92 59 chr3 134414315 134414618 -93109960 - AluSp SINE Alu 0 313 1 1433 158 57 74 chr3 134414618 134414890 -93109688 - MLT2C2 LTR ERVL -169 295 27 314 160 120 0 chr3 134414900 134414975 -93109603 - MLT2C2 LTR ERVL -380 84 1 686 326 72 24 chr3 134417014 134417428 -93107150 - L2 LINE L2 -49 3264 2831 604 189 39 0 chr3 134417478 134417605 -93106973 - MER69A DNA AcHobo -45 132 1 180 214 43 86 chr3 134417738 134417808 -93106770 + L2 LINE L2 3239 3305 -8 2131 108 10 3 chr3 134419237 134419532 -93105046 + AluSx SINE Alu 1 297 -15 428 183 63 8 chr3 134420682 134420808 -93103770 - AluSp/q SINE Alu -11 302 170 4357 102 46 4 chr3 134421739 134422505 -93102073 + L1P LINE L1 2 799 -5347 3149 148 4 11 chr3 134422643 134423189 -93101389 + L1PA15 LINE L1 5423 5964 -201 2073 125 7 0 chr3 134423213 134423508 -93101070 + AluSq SINE Alu 17 313 0 746 199 23 6 chr3 134423581 134423752 -93100826 - MER34C LTR ERV1 -257 328 155 298 277 18 18 chr3 134423753 134423865 -93100713 - LTR23-int LTR ERV1 -4136 987 876 5450 227 58 58 chr3 134424216 134425961 -93098617 + L1M2 LINE L1 520 2265 -4584 25 51 0 0 chr3 134427018 134427057 -93097521 + AT_rich Low_complexity Low_complexity 1 39 0 27 0 0 0 chr3 134427976 134428003 -93096575 + AT_rich Low_complexity Low_complexity 1 27 0 1030 110 13 13 chr3 134428647 134428801 -93095777 - AluSg/x SINE Alu -13 297 144 1176 157 90 34 chr3 134428924 134429191 -93095387 - MSTA LTR MaLR -146 282 1 818 239 15 15 chr3 134429248 134429520 -93095058 + L1MD3 LINE L1 7714 7985 -10 544 170 36 36 chr3 134429596 134429708 -93094870 - FLAM_A SINE Alu -9 133 22 216 67 0 0 chr3 134430329 134430359 -93094219 + (GA)n Simple_repeat Simple_repeat 1 30 0 344 234 102 4 chr3 134430540 134430625 -93093953 - MIR SINE MIR -87 121 13 272 220 17 0 chr3 134430721 134430780 -93093798 - MER90 LTR ERV1 0 614 555 339 74 93 0 chr3 134430783 134430837 -93093741 + L1MA8 LINE L1 6012 6070 -221 1416 230 62 21 chr3 134430869 134431351 -93093227 - MER90 LTR ERV1 -66 509 8 621 164 8 57 chr3 134431500 134431622 -93092956 + FRAM SINE Alu 45 160 -16 1204 218 53 111 chr3 134431816 134432234 -93092344 - L1ME3A LINE L1 0 6170 5796 1078 133 105 29 chr3 134432234 134432444 -93092134 + MER30 DNA MER1_type 5 230 0 1204 218 53 111 chr3 134432444 134432630 -93091948 - L1ME3A LINE L1 -374 5796 5601 2369 232 49 29 chr3 134432753 134433782 -93090796 - L1PA12 LINE L1 -4343 3241 2181 411 294 50 17 chr3 134434649 134434887 -93089691 - L1M2 LINE L1 -6499 350 105 355 214 62 36 chr3 134434894 134435006 -93089572 - L1MDa LINE L1 -5224 1306 1192 2192 113 0 3 chr3 134435008 134435309 -93089269 + AluSx SINE Alu 1 300 -12 1105 152 0 0 chr3 134435309 134435467 -93089111 + AluSg/x SINE Alu 134 291 -21 246 241 41 9 chr3 134435470 134435614 -93088964 - L1MDa LINE L1 -5347 1196 1025 3311 189 46 9 chr3 134436327 134436554 -93088024 + L1MB2 LINE L1 5398 5615 -556 2335 143 6 6 chr3 134436554 134436918 -93087660 + THE1B LTR MaLR 1 364 0 3311 189 46 9 chr3 134436918 134437436 -93087142 + L1MB2 LINE L1 5615 6170 -1 1830 185 28 5 chr3 134437455 134437844 -93086734 + L1MB7 LINE L1 5773 6170 -14 281 284 23 23 chr3 134437990 134438078 -93086500 + MIR SINE MIR 79 166 -96 228 308 158 34 chr3 134438900 134439046 -93085532 + MIR3 SINE MIR 5 168 -40 252 86 0 0 chr3 134439162 134439197 -93085381 + (CA)n Simple_repeat Simple_repeat 1 35 0 2020 144 13 0 chr3 134439466 134439765 -93084813 - AluSx SINE Alu -9 303 1 424 252 149 4 chr3 134439773 134440015 -93084563 - L1ME4a LINE L1 -216 5905 5629 562 315 5 11 chr3 134440139 134440323 -93084255 - MER5A DNA MER1_type 0 189 7 461 341 40 37 chr3 134441086 134441487 -93083091 + L2 LINE L2 2772 3177 -136 378 244 41 8 chr3 134441561 134441684 -93082894 - MER104 DNA Tc2 -18 162 36 269 152 38 190 chr3 134441708 134441797 -93082781 + L2 LINE L2 3165 3221 -92 2361 65 7 0 chr3 134441797 134442090 -93082488 - AluY SINE Alu -13 298 4 269 152 38 190 chr3 134442090 134442158 -93082420 + L2 LINE L2 3221 3298 -15 649 66 11 0 chr3 134642275 134642366 -92882212 + AluSg/x SINE Alu 219 310 0 235 319 131 6 chr3 134643085 134643245 -92881333 + MIR SINE MIR 68 247 -15 1715 108 8 42 chr3 134643493 134643649 -92880929 - AluSx SINE Alu -21 291 146 2309 99 3 0 chr3 134643649 134643943 -92880635 - AluSx SINE Alu -17 295 1 1715 108 8 42 chr3 134643943 134644046 -92880532 - AluSx SINE Alu -166 146 41 1971 137 0 0 chr3 134644046 134644362 -92880216 - AluSx SINE Alu 0 320 5 864 122 0 8 chr3 134644368 134644499 -92880079 - FLAM_C SINE Alu -3 130 1 480 259 48 27 chr3 134644550 134644697 -92879881 - MIR3 SINE MIR -17 191 42 1231 190 35 9 chr3 134644833 134645065 -92879513 + MER8 DNA MER2_type 1 238 -1 948 181 16 32 chr3 134645146 134645334 -92879244 - AluJb SINE Alu -12 300 116 1289 134 6 0 chr3 134645807 134645986 -92878592 + AluSx SINE Alu 1 180 -132 289 318 194 6 chr3 134646772 134647096 -92877482 + L2 LINE L2 2593 2977 -337 537 235 17 0 chr3 134647097 134647216 -92877362 - L2 LINE L2 0 3313 3193 521 252 73 48 chr3 134647238 134647444 -92877134 + L2 LINE L2 3025 3235 -37 234 208 75 0 chr3 134650112 134650165 -92874413 - L2 LINE L2 -1 3271 3215 2383 48 45 7 chr3 134650239 134650531 -92874047 + AluY SINE Alu 1 303 -8 192 241 27 125 chr3 134650572 134650684 -92873894 - MIR SINE MIR -78 130 30 2538 93 12 77 chr3 134650908 134651336 -92873242 - LTR10A LTR ERV1 -54 555 156 1180 173 73 23 chr3 134651451 134651671 -92872907 - AluJo SINE Alu -81 231 1 1854 156 7 10 chr3 134651704 134652006 -92872572 + AluJo SINE Alu 1 301 -11 2262 91 3 0 chr3 134652206 134652492 -92872086 + AluSg SINE Alu 1 287 -23 2248 89 7 0 chr3 134652595 134652904 -92871674 + AluSp SINE Alu 2 312 0 238 259 89 18 chr3 134652904 134653016 -92871562 + MIR SINE MIR 140 259 -3 1396 141 12 60 chr3 134653016 134653077 -92871501 - MER47A DNA MER2_type -2086 237 175 2423 79 3 0 chr3 134653077 134653381 -92871197 - AluY SINE Alu -6 305 1 1396 141 12 60 chr3 134653381 134653567 -92871011 - MER47A DNA MER2_type -2148 175 2 306 264 85 0 chr3 134653579 134653685 -92870893 + MIR SINE MIR 68 182 -80 2416 85 7 0 chr3 134653957 134654262 -92870316 - AluSp SINE Alu -6 307 1 1973 161 0 13 chr3 134654264 134654575 -92870003 - AluJo SINE Alu -5 307 1 1920 150 10 18 chr3 134654632 134655062 -92869516 + L1M4 LINE L1 5188 5608 -566 1118 220 0 20 chr3 134655069 134655314 -92869264 + AluJo SINE Alu 21 260 -52 2002 100 6 41 chr3 134656936 134657256 -92867322 + AluY SINE Alu 1 309 -2 233 333 38 11 chr3 134657277 134657386 -92867192 - MIR SINE MIR -39 169 56 503 212 15 51 chr3 134657446 134657583 -92866995 + AluJo SINE Alu 5 136 -176 230 341 97 35 chr3 134657632 134657858 -92866720 - L2 LINE L2 -119 3153 2914 2353 87 0 19 chr3 134657866 134658177 -92866401 + AluY SINE Alu 1 305 -6 2220 120 0 10 chr3 134658664 134658799 -92865779 + AluSq SINE Alu 1 136 -177 2172 115 3 13 chr3 134658799 134659112 -92865466 + AluSg SINE Alu 1 310 0 2220 120 0 10 chr3 134659112 134659276 -92865302 + AluSq SINE Alu 136 297 -16 2111 143 0 9 chr3 134659277 134659592 -92864986 + AluSx SINE Alu 1 312 0 21 36 0 0 chr3 134659595 134659623 -92864955 + AT_rich Low_complexity Low_complexity 1 28 0 1608 154 44 18 chr3 134659774 134660047 -92864531 - AluJo SINE Alu -32 280 1 838 185 68 12 chr3 134660227 134660389 -92864189 + FRAM SINE Alu 4 174 -2 663 174 58 43 chr3 134660394 134660532 -92864046 + AluJo SINE Alu 2 141 -171 2214 74 3 20 chr3 134660532 134660828 -92863750 + AluSx SINE Alu 1 291 -21 256 283 104 9 chr3 134660828 134660934 -92863644 + MIR SINE MIR 26 141 -67 188 284 118 29 chr3 134661000 134661102 -92863476 + L2 LINE L2 3203 3313 0 903 127 127 25 chr3 134661128 134661285 -92863293 - FRAM SINE Alu -7 169 1 222 37 0 0 chr3 134661285 134661312 -92863266 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 2188 100 11 0 chr3 134661312 134661593 -92862985 - AluSq SINE Alu -29 284 1 346 269 102 0 chr3 134661991 134662099 -92862479 + MLT1H LTR MaLR 114 232 -317 * 476 201 57 33 chr3 134662095 134662220 -92862358 - MLT1H1 LTR MaLR -443 112 1 1411 238 79 2 chr3 134662241 134662645 -92861933 - L1MC4 LINE L1 -332 7710 7276 1044 184 85 124 chr3 134662832 134663186 -92861392 + MER57A LTR ERV1 64 403 0 1988 179 75 36 chr3 134663218 134663660 -92860918 + LTR2B LTR ERV1 32 490 0 281 333 131 13 chr3 134663819 134663972 -92860606 + LTR2B-int LTR ERV1 165 335 -7202 340 277 18 18 chr3 134664645 134664757 -92859821 + LTR2B-int LTR ERV1 876 987 -4136 809 199 23 6 chr3 134664758 134664929 -92859649 + MER34C LTR ERV1 155 328 -257 2311 110 7 0 chr3 134665002 134665312 -92859266 - AluSq SINE Alu 0 313 2 706 158 78 81 chr3 134665462 134665722 -92858856 + MER31-int LTR ERV1 1027 2986 -3345 47 61 0 0 chr3 134665722 134665804 -92858774 + AT_rich Low_complexity Low_complexity 1 82 0 380 107 0 0 chr3 134665823 134665879 -92858699 + MER31-int LTR ERV1 1254 1309 -3627 * 539 223 88 47 chr3 134665869 134666062 -92858516 + MER31-int LTR ERV1 1467 1667 -3269 266 174 184 41 chr3 134665977 134666075 -92858503 + LTR57-int LTR ERVL 1306 1417 -3926 * 542 248 51 23 chr3 134666117 134666331 -92858247 + MER31-int LTR ERV1 1739 1958 -2978 2939 200 91 102 chr3 134666354 134667224 -92857354 + MER31-int LTR ERV1 2063 2941 -4005 785 165 0 0 chr3 134667224 134667345 -92857233 - FLAM_C SINE Alu -11 122 2 2939 200 91 102 chr3 134667345 134667921 -92856657 + MER31-int LTR ERV1 2941 3522 -3424 2928 88 0 3 chr3 134667921 134668297 -92856281 + THE1C LTR MaLR 1 375 0 2939 200 91 102 chr3 134668297 134668407 -92856171 + MER31-int LTR ERV1 3522 5448 -1498 15095 186 31 14 chr3 134668415 134672824 -92851754 - L1PB2 LINE L1 -3 6864 3214 2106 143 0 0 chr3 134672824 134673124 -92851454 - AluSq SINE Alu -13 300 1 15095 186 31 14 chr3 134673124 134676255 -92848323 - L1PB2 LINE L1 -3653 3214 137 30672 115 12 33 chr3 134676356 134682245 -92842333 - L1P3 LINE L1 -463 6024 115 253 292 158 23 chr3 134682239 134682410 -92842168 - L1MC/D LINE L1 -2026 5782 5589 * 23 0 0 0 chr3 134682410 134682433 -92842145 + AT_rich Low_complexity Low_complexity 1 23 0 268 80 0 40 chr3 134682433 134682483 -92842095 - L1MA3 LINE L1 0 6305 6258 2283 101 0 17 chr3 134682491 134682789 -92841789 - AluSq SINE Alu -20 293 1 427 281 94 49 chr3 134682805 134683093 -92841485 - L1MC/D LINE L1 -2211 5597 5297 571 250 33 0 chr3 134683118 134683302 -92841276 - L1MC/D LINE L1 -1801 4345 4156 483 276 47 6 chr3 134683314 134683484 -92841094 - L1MC/D LINE L1 -2251 3895 3719 * 2267 217 29 7 chr3 134683482 134684035 -92840543 - L1MEc LINE L1 -2023 4192 3628 874 236 0 0 chr3 134684037 134684215 -92840363 - FRAM SINE Alu -6 170 1 4517 223 44 27 chr3 134684215 134684356 -92840222 - L1MEc LINE L1 -2581 3634 3497 2367 108 0 19 chr3 134684356 134684672 -92839906 - AluSx SINE Alu -2 310 1 4517 223 44 27 chr3 134684672 134684923 -92839655 - L1MEc LINE L1 -2718 3497 3252 1902 184 0 0 chr3 134684923 134685233 -92839345 - AluJb SINE Alu -2 310 1 4517 223 44 27 chr3 134685233 134686448 -92838130 - L1MEc LINE L1 -2963 3252 2047 468 200 35 124 chr3 134686450 134686505 -92838073 + Tigger1 DNA MER2_type 2 60 -2358 2254 86 0 27 chr3 134686505 134686806 -92837772 - AluSx SINE Alu -13 299 7 468 200 35 124 chr3 134686806 134686895 -92837683 + Tigger1 DNA MER2_type 60 133 -2285 1392 125 5 9 chr3 134686906 134687122 -92837456 + Tigger1 DNA MER2_type 2204 2418 0 496 189 7 98 chr3 134687122 134687265 -92837313 - L1MEc LINE L1 -4349 2047 1918 * 3195 253 56 30 chr3 134687263 134687589 -92836989 - L1MEc LINE L1 -5352 1044 728 2163 76 94 0 chr3 134687589 134687864 -92836714 - AluY SINE Alu -10 301 1 3195 253 56 30 chr3 134687864 134688522 -92836056 - L1MEc LINE L1 -5668 728 35 643 233 64 83 chr3 134688574 134688887 -92835691 - L1MC4 LINE L1 0 8042 7736 596 243 132 32 chr3 134688909 134689098 -92835480 - MLT1G LTR MaLR -8 582 375 324 274 0 24 chr3 134689151 134689235 -92835343 - MLT1G LTR MaLR -288 267 186 831 269 57 0 chr3 134689236 134689463 -92835115 + L1MC4 LINE L1 7382 7621 -421 1820 187 13 40 chr3 134689463 134689842 -92834736 - MLT1B LTR MaLR 0 390 22 2557 108 26 115 chr3 134690131 134690704 -92833874 + L1PA10 LINE L1 5645 6166 -2 1961 141 7 3 chr3 134691446 134691744 -92832834 - AluSx SINE Alu -13 299 1 387 0 0 0 chr3 134692326 134692369 -92832209 + (TG)n Simple_repeat Simple_repeat 1 43 0 186 107 0 0 chr3 134692907 134692935 -92831643 + L2 LINE L2 2730 2757 -557 485 361 97 6 chr3 134693018 134693378 -92831200 + L2 LINE L2 2873 3265 -7 2594 145 32 34 chr3 134693919 134694387 -92830191 - MLT1C LTR MaLR 0 467 1 1949 149 3 0 chr3 134694596 134694885 -92829693 + AluSx SINE Alu 1 290 -22 234 264 0 0 chr3 134694989 134695042 -92829536 + L1MC4 LINE L1 6637 6689 -1353 2229 89 0 0 chr3 134695537 134695817 -92828761 + AluSx SINE Alu 1 280 -32 1037 61 49 0 chr3 134695818 134695981 -92828597 + GA-rich Low_complexity Low_complexity 2 172 0 623 266 54 5 chr3 134696286 134696470 -92828108 - MIR SINE MIR -45 217 25 1804 167 148 13 chr3 134698731 134699108 -92825470 + MSTA LTR MaLR 1 428 0 10253 119 11 34 chr3 134699110 134700726 -92823852 + MSTA-int LTR MaLR 3 1580 0 1923 141 136 16 chr3 134700726 134701108 -92823470 + MSTA LTR MaLR 1 428 0 15721 197 19 88 chr3 134701139 134707269 -92817309 - L1 LINE L1 -772 6016 344 1558 209 27 3 chr3 134707269 134707566 -92817012 + AluJb SINE Alu 1 304 -8 15721 197 19 88 chr3 134707566 134707876 -92816702 - L1 LINE L1 -6444 344 14 242 263 40 0 chr3 134708251 134708327 -92816251 + GA-rich Low_complexity Low_complexity 4 82 0 24 53 0 0 chr3 134708968 134709006 -92815572 + AT_rich Low_complexity Low_complexity 1 38 0 615 243 29 0 chr3 134709013 134709146 -92815432 + L1MD3 LINE L1 7804 7945 -50 2466 45 3 23 chr3 134709146 134709455 -92815123 - AluY SINE Alu -8 303 1 615 243 29 0 chr3 134709455 134709494 -92815084 + L1MD3 LINE L1 7945 7981 -14 996 247 41 47 chr3 134710200 134710540 -92814038 - MER102b DNA MER1_type -3 338 1 205 295 16 0 chr3 134714062 134714134 -92810444 - MIR SINE MIR -74 134 75 324 0 0 0 chr3 134715167 134715203 -92809375 + (CA)n Simple_repeat Simple_repeat 2 37 0 329 232 20 40 chr3 134716377 134716476 -92808102 + MER5B DNA MER1_type 4 100 -78 595 250 132 5 chr3 134717331 134717535 -92807043 + MIR SINE MIR 32 261 -1 2212 99 19 25 chr3 134717804 134718118 -92806460 + AluSx SINE Alu 1 312 0 269 282 185 15 chr3 134719809 134720004 -92804574 - MIR SINE MIR -16 246 19 2141 116 0 3 chr3 134721039 134721350 -92803228 - AluSg SINE Alu 0 310 1 1048 144 0 0 chr3 134721998 134722200 -92802378 + AluSg/x SINE Alu 130 331 0 372 239 64 18 chr3 134722285 134722394 -92802184 - MIR SINE MIR -93 169 56 31 0 0 0 chr3 134723407 134723438 -92801140 + AT_rich Low_complexity Low_complexity 1 31 0 2169 109 3 10 chr3 134723529 134723822 -92800756 + AluSx SINE Alu 1 291 -21 311 270 71 32 chr3 134723943 134724069 -92800509 - MER5A DNA MER1_type -58 131 1 771 254 0 39 chr3 134724360 134724565 -92800013 + MIR SINE MIR 4 200 -62 329 314 108 14 chr3 134725212 134725435 -92799143 + L3 LINE CR1 966 1209 -368 2164 183 57 35 chr3 134725512 134726005 -92798573 - MLT1D LTR MaLR 0 505 2 188 182 0 0 chr3 134726045 134726078 -92798500 + L3b LINE CR1 1537 1569 -14 1926 154 0 13 chr3 134726093 134726399 -92798179 - AluJb SINE Alu -10 302 1 1886 160 7 17 chr3 134726730 134727023 -92797555 + AluJo SINE Alu 1 290 -22 483 125 0 80 chr3 134727023 134727111 -92797467 + Charlie3 DNA MER1_type 2622 2702 -8 330 284 53 0 chr3 134727253 134727348 -92797230 - MIR SINE MIR -81 127 28 1984 133 50 12 chr3 134727675 134727998 -92796580 + MER1B DNA MER1_type 3 337 0 1162 163 64 33 chr3 134728515 134728841 -92795737 - MLT1D LTR MaLR -126 379 1 23 33 0 0 chr3 134729835 134729865 -92794713 + AT_rich Low_complexity Low_complexity 1 30 0 836 179 144 0 chr3 134729988 134730161 -92794417 + MER3 DNA MER1_type 12 209 0 516 280 13 116 chr3 134731357 134731753 -92792825 + L2 LINE L2 2871 3225 -47 242 313 80 9 chr3 134731941 134732053 -92792525 + MIR3 SINE MIR 43 162 -46 388 227 74 85 chr3 134733364 134733540 -92791038 + MIR SINE MIR 48 221 -41 2561 62 3 0 chr3 134734428 134734733 -92789845 - AluY SINE Alu -5 306 1 285 242 0 15 chr3 134734923 134734989 -92789589 + GA-rich Low_complexity Low_complexity 4 68 0 215 216 48 136 chr3 134735060 134735185 -92789393 + MIR3 SINE MIR 84 154 -54 1171 168 0 34 chr3 134735320 134735528 -92789050 + AluJo SINE Alu 84 284 -28 367 213 13 13 chr3 134736322 134736397 -92788181 - MSTA LTR MaLR -353 75 1 2003 116 113 6 chr3 134738034 134738363 -92786215 + THE1B LTR MaLR 1 364 0 377 65 13 39 chr3 134738511 134738588 -92785990 + (TA)n Simple_repeat Simple_repeat 2 76 0 623 261 120 64 chr3 134738619 134738898 -92785680 - L1ME4a LINE L1 -19 6102 5785 2169 117 0 13 chr3 134738898 134739198 -92785380 - AluSx SINE Alu -16 296 1 623 261 120 64 chr3 134739198 134739385 -92785193 - L1ME4a LINE L1 -336 5785 5610 303 223 103 91 chr3 134739386 134739561 -92785017 - MLT1K LTR MaLR -2 586 410 213 196 0 0 chr3 134740706 134740752 -92783826 + T-rich Low_complexity Low_complexity 1 46 0 214 215 200 0 chr3 134740947 134741012 -92783566 + MIR SINE MIR 73 150 -112 664 201 14 28 chr3 134743002 134743146 -92781432 + MER5B DNA MER1_type 1 142 -36 2405 96 0 3 chr3 134743146 134743459 -92781119 + AluSq SINE Alu 1 312 -1 1851 163 3 10 chr3 134744094 134744400 -92780178 + AluJb SINE Alu 2 305 -7 2376 92 0 6 chr3 134744498 134744812 -92779766 + AluSx SINE Alu 1 312 0 520 220 54 104 chr3 134744813 134745072 -92779506 + L2 LINE L2 3067 3312 -1 527 340 70 4 chr3 134745581 134745822 -92778756 - L3 LINE CR1 -91 1486 1230 1555 111 0 5 chr3 134745869 134746099 -92778479 - AluSg/x SINE Alu 0 309 81 227 281 172 16 chr3 134746099 134746215 -92778363 + MIR SINE MIR 109 249 -13 311 296 56 8 chr3 134747836 134747961 -92776617 + MIR3 SINE MIR 74 204 -4 21 36 0 0 chr3 134748669 134748697 -92775881 + AT_rich Low_complexity Low_complexity 1 28 0 889 312 78 25 chr3 134749024 134749438 -92775140 - L3 LINE CR1 -20 1557 1166 2256 107 3 7 chr3 134749438 134749737 -92774841 - AluSq SINE Alu -15 298 1 889 312 78 25 chr3 134749737 134749821 -92774757 - L3 LINE CR1 -411 1166 1088 426 39 0 0 chr3 134749821 134749873 -92774705 + (TC)n Simple_repeat Simple_repeat 1 52 0 393 75 0 0 chr3 134749872 134749925 -92774653 + (CA)n Simple_repeat Simple_repeat 1 53 0 * 889 312 78 25 chr3 134749873 134750018 -92774560 - L3 LINE CR1 -489 1088 934 484 279 99 22 chr3 134750099 134750321 -92774257 - MIR SINE MIR 0 262 24 294 261 50 67 chr3 134750901 134751020 -92773558 - MIR3 SINE MIR -89 119 3 552 248 24 0 chr3 134751775 134751900 -92772678 + MER94 DNA DNA 1 128 -6 739 232 118 19 chr3 134751943 134752154 -92772424 - MIR SINE MIR -11 251 20 421 311 77 20 chr3 134752429 134752625 -92771953 + MIR SINE MIR 35 241 -21 2079 125 0 7 chr3 134753126 134753429 -92771149 + AluSq SINE Alu 1 301 -12 843 174 81 0 chr3 134753701 134753873 -92770705 + MER97b DNA MER1_type? 53 238 -815 2698 171 33 48 chr3 134753873 134754340 -92770238 - L1MB8 LINE L1 -1 6177 5719 4818 128 49 43 chr3 134754340 134755161 -92769417 - LTR12 LTR ERV1 0 826 1 2698 171 33 48 chr3 134755161 134755294 -92769284 - L1MB8 LINE L1 -459 5719 5586 297 135 0 54 chr3 134755296 134755370 -92769208 + MER97b DNA MER1_type? 230 299 -754 392 156 26 0 chr3 134755372 134755449 -92769129 + MER97c DNA MER1_type? 263 341 -749 1724 195 53 106 chr3 134755526 134756094 -92768484 + MER97a DNA MER1_type? 357 894 0 2571 227 38 31 chr3 134756550 134757455 -92767123 + L1MC/D LINE L1 4539 5444 -743 367 248 71 0 chr3 134757782 134757895 -92766683 + MIR SINE MIR 69 189 -73 194 192 77 0 chr3 134758265 134758317 -92766261 + L2 LINE L2 3253 3308 -5 852 189 16 21 chr3 134758578 134758769 -92765809 - MIR SINE MIR 0 262 73 781 96 0 0 chr3 134759072 134759176 -92765402 - U6 snRNA snRNA -3 104 1 2301 103 3 0 chr3 134759903 134760204 -92764374 + AluSp SINE Alu 1 302 -11 224 191 0 0 chr3 134760400 134760447 -92764131 - L2 LINE L2 0 3313 3267 616 297 57 9 chr3 134760466 134760695 -92763883 + MIR SINE MIR 2 241 -21 897 168 43 22 chr3 134761316 134761501 -92763077 + MER53 DNA DNA 1 189 0 214 268 122 0 chr3 134761670 134761752 -92762826 - L2 LINE L2 -38 3234 3143 198 200 133 0 chr3 134761803 134761863 -92762715 - MIR SINE MIR -10 252 185 859 177 7 14 chr3 134761891 134762038 -92762540 - AluJb SINE Alu -38 274 129 288 227 27 0 chr3 134762038 134762113 -92762465 - MIR SINE MIR -87 175 99 2437 80 0 10 chr3 134762210 134762521 -92762057 - AluY SINE Alu -3 308 1 274 259 25 0 chr3 134762660 134762741 -92761837 - MIR SINE MIR -165 97 15 225 274 37 82 chr3 134762776 134762911 -92761667 + L2 LINE L2 3184 3312 -1 371 289 30 15 chr3 134764060 134764195 -92760383 + MIR3 SINE MIR 65 201 -7 233 111 0 0 chr3 134764670 134764706 -92759872 - L2 LINE L2 -211 3061 3026 1332 181 31 0 chr3 134765217 134765444 -92759134 + MER1B DNA MER1_type 1 234 -63 1143 94 6 6 chr3 134765479 134765639 -92758939 + MER1B DNA MER1_type 174 333 0 2224 142 15 0 chr3 134765741 134766079 -92758499 + MER2 DNA MER2_type 2 344 0 391 301 78 6 chr3 134768639 134768805 -92755773 + MIR SINE MIR 20 197 -65 239 263 0 0 chr3 134770219 134770276 -92754302 - MIR SINE MIR -11 251 195 229 232 18 0 chr3 134770283 134770339 -92754239 + (CATAT)n Simple_repeat Simple_repeat 2 58 0 386 236 56 0 chr3 134770630 134770719 -92753859 + MIR SINE MIR 92 185 -77 2229 84 52 3 chr3 134770757 134771044 -92753534 + AluSg1 SINE Alu 1 301 -8 385 62 31 0 chr3 134771694 134771759 -92752819 + (TG)n Simple_repeat Simple_repeat 1 67 0 1672 83 0 79 chr3 134771759 134772011 -92752567 - AluSq SINE Alu -31 282 51 26 0 0 0 chr3 134772080 134772106 -92752472 + AT_rich Low_complexity Low_complexity 1 26 0 452 268 33 13 chr3 134772366 134772519 -92752059 + MIR SINE MIR 20 175 -87 3681 50 2 0 chr3 134772720 134773164 -92751414 - L1PA6 LINE L1 0 6154 5710 1889 271 88 25 chr3 134773359 134773582 -92750996 - L1MC4a LINE L1 -1654 6154 5947 2439 107 0 0 chr3 134773582 134773892 -92750686 + AluSx SINE Alu 1 310 -2 1889 271 88 25 chr3 134773892 134774362 -92750216 - L1MC4a LINE L1 -1861 5947 5417 380 304 101 23 chr3 134774419 134774636 -92749942 - L2 LINE L2 -170 3102 2869 4702 157 51 4 chr3 134775210 134776234 -92748344 + L1MB7 LINE L1 5099 6163 -21 2189 116 0 31 chr3 134776235 134776554 -92748024 - AluSx SINE Alu -3 309 1 678 218 135 23 chr3 134777232 134777498 -92747080 - L1ME1 LINE L1 -96 6070 5775 330 252 157 50 chr3 134778416 134778575 -92746003 + MER5A DNA MER1_type 14 189 0 2230 111 0 20 chr3 134778603 134778909 -92745669 - AluSx SINE Alu -11 301 2 195 231 0 0 chr3 134778909 134778948 -92745630 - MER5A DNA MER1_type -4 185 147 2158 131 0 0 chr3 134779714 134780012 -92744566 + AluSq SINE Alu 1 298 -15 317 318 108 0 chr3 134780170 134780318 -92744260 - MIR SINE MIR -15 247 84 180 77 0 0 chr3 134780435 134780461 -92744117 + (GA)n Simple_repeat Simple_repeat 1 26 0 996 155 28 11 chr3 134781755 134781936 -92742642 - MER5A DNA MER1_type 0 189 6 21 36 0 0 chr3 134782003 134782031 -92742547 + AT_rich Low_complexity Low_complexity 1 28 0 2083 117 23 3 chr3 134782039 134782339 -92742239 + AluSq SINE Alu 1 306 -7 37 0 0 0 chr3 134783156 134783193 -92741385 + AT_rich Low_complexity Low_complexity 1 37 0 27 73 0 0 chr3 134783421 134783476 -92741102 + AT_rich Low_complexity Low_complexity 1 55 0 2272 87 35 0 chr3 134784048 134784335 -92740243 + AluSq SINE Alu 1 297 -16 2394 92 3 0 chr3 134784805 134785109 -92739469 + AluY SINE Alu 1 305 -6 319 204 129 0 chr3 134786005 134786098 -92738480 - MIR SINE MIR -62 146 42 598 262 249 0 chr3 134786434 134786747 -92737831 - L2 LINE L2 -2139 1175 785 180 111 0 0 chr3 134787182 134787209 -92737369 + (A)n Simple_repeat Simple_repeat 1 27 0 273 241 36 54 chr3 134787649 134787761 -92736817 - HAL1b LINE L1 -5 1343 1234 336 266 66 66 chr3 134787946 134788172 -92736406 - L1ME1 LINE L1 -335 5786 5561 4255 96 77 21 chr3 134788878 134789509 -92735069 - L1PA13 LINE L1 -4 6159 5488 2439 83 3 0 chr3 134789509 134789811 -92734767 - AluSq SINE Alu -10 303 1 4255 96 77 21 chr3 134789811 134789838 -92734740 - L1PA13 LINE L1 -675 5488 5464 535 242 124 5 chr3 134789907 134790111 -92734467 - MIR SINE MIR -1 261 34 378 300 65 46 chr3 134790297 134790557 -92734021 + L1ME4a LINE L1 5099 5363 -783 21 0 0 0 chr3 134790603 134790624 -92733954 + AT_rich Low_complexity Low_complexity 1 21 0 2443 85 0 0 chr3 134790685 134790992 -92733586 - AluSx SINE Alu -5 307 1 789 310 37 9 chr3 134790992 134791318 -92733260 + L1ME4a LINE L1 5512 5846 -275 2269 147 44 53 chr3 134791322 134791714 -92732864 + MSTB LTR MaLR 1 390 -36 1780 160 137 21 chr3 134791714 134792095 -92732483 + MSTA LTR MaLR 4 428 0 2269 147 44 53 chr3 134792095 134792132 -92732446 + MSTB LTR MaLR 390 426 0 228 151 0 19 chr3 134792277 134792330 -92732248 + L1ME4a LINE L1 5996 6047 -74 1764 215 78 21 chr3 134792359 134792833 -92731745 - MLT1D LTR MaLR 0 505 5 661 239 6 44 chr3 134793063 134793243 -92731335 - FRAM SINE Alu -3 173 1 275 349 23 12 chr3 134793252 134793338 -92731240 + L2 LINE L2 3123 3209 -63 1788 103 0 0 chr3 134793435 134793659 -92730919 + AluSx SINE Alu 1 224 -88 506 307 47 47 chr3 134793664 134793921 -92730657 + L2 LINE L2 2830 3086 -227 469 106 15 0 chr3 134793935 134794001 -92730577 + AluSx SINE Alu 230 296 -16 492 229 48 0 chr3 134794089 134794194 -92730384 - MER81 DNA DNA -4 110 1 1192 300 48 32 chr3 134794352 134794849 -92729729 - L2 LINE L2 -5 3308 2804 350 226 126 69 chr3 134796371 134796530 -92728048 - L2 LINE L2 -29 3284 3117 568 142 26 18 chr3 134796951 134797064 -92727514 + L1ME3 LINE L1 6048 6161 -1 625 212 17 0 chr3 134797598 134797778 -92726800 - FLAM_A SINE Alu 0 182 1 400 290 20 102 chr3 134798715 134798940 -92725638 + L3 LINE CR1 1341 1544 -33 2490 50 3 0 chr3 134798940 134799237 -92725341 + AluY SINE Alu 7 304 -7 400 290 20 102 chr3 134799237 134799266 -92725312 + L3 LINE CR1 1544 1574 -3 942 206 22 0 chr3 134801116 134801300 -92723278 - MER5A DNA MER1_type -1 188 1 2499 171 36 33 chr3 134801494 134801624 -92722954 - L1MB7 LINE L1 -30 6154 6026 2338 152 34 13 chr3 134801624 134802012 -92722566 - MSTD LTR MaLR 0 396 1 2499 171 36 33 chr3 134802012 134802156 -92722422 - L1MB7 LINE L1 -158 6026 5884 2197 114 3 10 chr3 134802156 134802455 -92722123 - AluSx SINE Alu -15 297 1 2499 171 36 33 chr3 134802455 134802700 -92721878 - L1MB7 LINE L1 -300 5884 5632 435 303 71 22 chr3 134802829 134803069 -92721509 - MIR SINE MIR -10 252 3 2033 163 22 19 chr3 134803468 134803767 -92720811 - MLT1A1 LTR MaLR -2 363 61 7971 69 6 4 chr3 134803767 134804772 -92719806 - LTR13 LTR ERVK 0 1007 1 2033 163 22 19 chr3 134804772 134804834 -92719744 - MLT1A1 LTR MaLR -304 61 1 218 264 19 0 chr3 134804839 134804892 -92719686 - MIR3 SINE MIR -47 161 108 918 285 83 25 chr3 134804918 134805325 -92719253 - L2 LINE L2 -12 3301 2871 265 145 32 0 chr3 134805499 134805561 -92719017 + (TA)n Simple_repeat Simple_repeat 2 65 0 767 294 79 36 chr3 134805602 134806096 -92718482 - L2 LINE L2 -476 2838 2324 2171 114 0 13 chr3 134806102 134806409 -92718169 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr3 134806668 134806689 -92717889 + AT_rich Low_complexity Low_complexity 1 21 0 1007 189 9 66 chr3 134807090 134807318 -92717260 - MER20 DNA MER1_type -4 215 1 227 140 0 80 chr3 134807696 134807746 -92716832 + L2 LINE L2 3268 3313 0 2057 133 0 0 chr3 134809395 134809698 -92714880 + AluJb SINE Alu 3 305 0 618 182 8 8 chr3 134810197 134810318 -92714260 + FLAM_C SINE Alu 11 131 -12 2322 211 54 12 chr3 134810955 134811472 -92713106 - L1MC4a LINE L1 -6 7802 7264 508 183 226 0 chr3 134811474 134811589 -92712989 - L1MC4a LINE L1 -657 7151 7011 846 163 0 0 chr3 134811899 134812028 -92712550 + FLAM_C SINE Alu 1 129 -4 394 340 65 41 chr3 134812506 134812800 -92711778 - MLT1K LTR MaLR -6 582 282 439 252 9 17 chr3 134813473 134813588 -92710990 - MER5B DNA MER1_type -64 114 1 450 266 76 93 chr3 134815100 134815245 -92709333 - MIR SINE MIR 0 262 121 1602 190 0 4 chr3 134815245 134815519 -92709059 + AluJo SINE Alu 35 307 -5 450 266 76 93 chr3 134815519 134815610 -92708968 - MIR SINE MIR -141 121 30 209 176 0 0 chr3 134816954 134816988 -92707590 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 1738 87 0 140 chr3 134817376 134817676 -92706902 + AluSx SINE Alu 1 258 -54 21 0 0 0 chr3 134817680 134817701 -92706877 + AT_rich Low_complexity Low_complexity 1 21 0 185 294 110 37 chr3 134817893 134818002 -92706576 + MIR SINE MIR 113 229 -33 2357 94 0 0 chr3 134818117 134818414 -92706164 + AluSx SINE Alu 3 299 -13 1013 227 31 27 chr3 134819698 134819958 -92704620 + MIR SINE MIR 2 262 0 488 237 51 51 chr3 134820112 134820268 -92704310 - MLT1K LTR MaLR -277 311 156 399 277 146 18 chr3 134820428 134820648 -92703930 - MIR SINE MIR -12 250 3 285 328 61 23 chr3 134820872 134821003 -92703575 - L2 LINE L2 -183 3089 2954 226 358 118 5 chr3 134821026 134821230 -92703348 + MIR SINE MIR 29 255 -7 784 255 131 45 chr3 134822463 134822929 -92701649 - MLT1J LTR MaLR -2 509 4 889 237 65 4 chr3 134823539 134823780 -92700798 + L1MC4a LINE L1 5560 5804 -366 902 319 80 16 chr3 134823899 134824263 -92700315 + LTR16C LTR ERVL 97 483 -8 2260 122 0 3 chr3 134824290 134824602 -92699976 + AluSx SINE Alu 2 312 0 500 312 21 25 chr3 134824616 134824853 -92699725 + L1MC4a LINE L1 5812 6047 -1761 1563 152 21 139 chr3 134825071 134825460 -92699118 - MER2 DNA MER2_type 0 345 3 268 284 28 28 chr3 134825709 134825818 -92698760 - MIR SINE MIR -5 257 149 197 255 0 0 chr3 134825896 134825943 -92698635 - L2 LINE L2 -16 3297 3251 255 252 41 89 chr3 134826185 134826258 -92698320 + MIR3 SINE MIR 85 151 -57 1243 118 8 88 chr3 134826258 134826496 -92698082 - MER20 DNA MER1_type 0 219 1 255 252 41 89 chr3 134826496 134826545 -92698033 + MIR3 SINE MIR 151 201 -7 460 288 128 62 chr3 134827957 134828768 -92695810 - L2 LINE L2 0 3272 2385 209 330 127 0 chr3 134828828 134828946 -92695632 - L2 LINE L2 -37 3235 3103 267 246 63 56 chr3 134829016 134829142 -92695436 - L2 LINE L2 0 3272 3146 2285 103 13 10 chr3 134829334 134829646 -92694932 + AluSq SINE Alu 1 313 0 330 199 48 62 chr3 134829820 134829966 -92694612 + L1ME4a LINE L1 5978 6121 0 2041 120 21 0 chr3 134829966 134830249 -92694329 + AluSx SINE Alu 1 289 -23 2265 115 0 13 chr3 134830259 134830571 -92694007 + AluSg SINE Alu 1 308 -2 412 290 127 23 chr3 134830711 134830932 -92693646 + MIR SINE MIR 1 244 -18 934 119 8 0 chr3 134834687 134834813 -92689765 + FLAM_C SINE Alu 1 127 -16 260 120 20 0 chr3 134835245 134835295 -92689283 + CT-rich Low_complexity Low_complexity 1 51 0 197 355 103 28 chr3 134838911 134839193 -92685385 + L2 LINE L2 225 527 -2787 285 336 174 13 chr3 134840018 134840547 -92684031 + L2 LINE L2 1437 2050 -1264 2085 124 0 0 chr3 134840568 134840904 -92683674 + AluSx SINE Alu 1 336 0 287 184 0 0 chr3 134840904 134840953 -92683625 - L1MB5 LINE L1 -50 6124 6076 303 300 0 0 chr3 134841226 134841306 -92683272 + L2 LINE L2 3198 3277 -36 2174 91 26 26 chr3 134842268 134842577 -92682001 + AluSg SINE Alu 1 309 -1 189 273 63 98 chr3 134842593 134842736 -92681842 - MER5A DNA MER1_type -45 144 7 282 180 0 0 chr3 134843344 134843394 -92681184 + MER94 DNA DNA 78 127 -7 839 208 29 23 chr3 134843572 134843745 -92680833 + Tigger7 DNA MER2_type 2 175 -2312 244 135 0 0 chr3 134844554 134844591 -92679987 - MER68 LTR ERV1 -525 37 1 * 695 189 92 66 chr3 134844591 134844772 -92679806 - MER68 LTR ERV1 -340 222 37 1120 158 6 6 chr3 134844772 134844943 -92679635 + MER68 LTR ERV1 176 346 -216 2348 115 0 0 chr3 134844972 134845285 -92679293 - AluSq SINE Alu 0 313 1 294 265 102 17 chr3 134845300 134845593 -92678985 - L2 LINE L2 -853 2461 2078 26 0 0 0 chr3 134846098 134846124 -92678454 + AT_rich Low_complexity Low_complexity 1 26 0 466 195 270 27 chr3 134846290 134846475 -92678103 - MLT1J1 LTR MaLR -140 306 77 249 164 55 55 chr3 134846444 134846499 -92678079 - MLT1J2 LTR MaLR -342 108 54 * 2464 78 0 0 chr3 134846628 134846924 -92677654 + AluY SINE Alu 1 296 -15 1436 179 8 8 chr3 134846991 134847231 -92677347 + AluJo SINE Alu 1 240 -72 194 216 81 27 chr3 134847796 134847870 -92676708 - MIR SINE MIR -56 206 129 312 346 37 27 chr3 134848240 134848428 -92676150 - LTR67 LTR ERVL -269 288 99 282 220 68 51 chr3 134848603 134848721 -92675857 + L3 LINE CR1 1389 1508 -69 770 241 47 11 chr3 134849112 134849303 -92675275 + MLT1A1 LTR MaLR 168 365 0 2341 111 0 0 chr3 134849326 134849632 -92674946 + AluSq SINE Alu 1 306 -7 1900 156 26 0 chr3 134849904 134850206 -92674372 + AluJb SINE Alu 1 310 -2 1646 94 5 5 chr3 134850338 134850550 -92674028 + AluSx SINE Alu 1 212 -100 862 110 34 0 chr3 134850550 134850668 -92673910 + AluSp/q SINE Alu 161 282 -31 512 230 125 0 chr3 134851360 134851512 -92673066 - L1MC4a LINE L1 -1904 5904 5734 2083 129 3 19 chr3 134851586 134851897 -92672681 + AluSx SINE Alu 1 306 -6 2533 80 3 0 chr3 134852595 134852907 -92671671 + AluSp SINE Alu 1 313 0 198 0 0 0 chr3 134854626 134854648 -92669930 + (C)n Simple_repeat Simple_repeat 1 22 0 25 0 0 0 chr3 134855268 134855293 -92669285 + GC_rich Low_complexity Low_complexity 1 25 0 396 246 93 8 chr3 134855583 134855701 -92668877 + L2 LINE L2 3185 3312 -1 267 304 69 10 chr3 134855849 134855951 -92668627 + MARNA DNA Mariner 149 256 -330 225 241 107 54 chr3 134856015 134856127 -92668451 + MARNA DNA Mariner 415 532 -54 26 30 0 0 chr3 134857005 134857038 -92667540 + AT_rich Low_complexity Low_complexity 1 33 0 483 161 0 12 chr3 134857688 134857769 -92666809 - MER58 DNA MER1_type -23 2397 2318 248 86 0 0 chr3 134857766 134857801 -92666777 - MER58 DNA MER1_type -2321 99 65 * 390 146 37 0 chr3 134858410 134858492 -92666086 - L1MA7 LINE L1 -130 6161 6077 1765 166 47 0 chr3 134858547 134858726 -92665852 - AluJo SINE Alu -2 310 110 396 40 0 0 chr3 134858726 134858776 -92665802 + (TG)n Simple_repeat Simple_repeat 1 50 0 1765 166 47 0 chr3 134858776 134858892 -92665686 - AluJo SINE Alu -202 110 1 2187 112 7 3 chr3 134858904 134859200 -92665378 - AluSx SINE Alu -15 297 1 683 239 85 60 chr3 134859200 134859531 -92665047 + L1MC4a LINE L1 5584 5922 -1886 186 43 0 0 chr3 134859859 134859882 -92664696 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 2217 103 0 10 chr3 134859887 134860178 -92664400 - AluSq SINE Alu -25 288 1 21 82 0 0 chr3 134860284 134860333 -92664245 + AT_rich Low_complexity Low_complexity 1 49 0 1872 166 7 0 chr3 134860345 134860640 -92663938 - AluSx SINE Alu -15 297 1 625 212 17 0 chr3 134861375 134861555 -92663023 - FLAM_A SINE Alu 0 182 1 365 323 32 51 chr3 134862492 134862709 -92661869 + L3 LINE CR1 1341 1553 -24 2312 97 0 16 chr3 134862711 134863021 -92661557 + AluSg SINE Alu 4 308 -2 2100 116 24 66 chr3 134863048 134863428 -92661150 - THE1B LTR MaLR 0 364 1 1333 89 6 0 chr3 134863428 134863608 -92660970 - THE1B-int LTR MaLR 0 1580 1400 204 40 0 0 chr3 134866334 134866359 -92658219 + (A)n Simple_repeat Simple_repeat 1 25 0 262 291 73 10 chr3 134868189 134868300 -92656278 - MIR SINE MIR -58 150 30 2341 108 0 0 chr3 134868338 134868635 -92655943 - AluSx SINE Alu -15 297 1 189 0 0 0 chr3 134868650 134868671 -92655907 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 2169 98 4 0 chr3 134868674 134868949 -92655629 - AluSp SINE Alu -37 276 1 394 157 97 157 chr3 134869368 134869502 -92655076 - AluJo SINE Alu -168 134 9 1048 186 43 30 chr3 134870592 134871058 -92653520 - L1MA7 LINE L1 -142 6149 5166 803 184 0 0 chr3 134871077 134871224 -92653354 - L1MA7 LINE L1 -951 5195 5049 2017 113 40 7 chr3 134871224 134871524 -92653054 - AluY SINE Alu -1 310 1 498 208 63 31 chr3 134871623 134871782 -92652796 - MER113 DNA MER1_type? -218 303 140 277 346 0 13 chr3 134872069 134872147 -92652431 + L2 LINE L2 3133 3209 -63 1650 96 0 22 chr3 134872244 134872473 -92652105 + AluSx SINE Alu 1 224 -88 432 302 42 64 chr3 134872478 134872743 -92651835 + L2 LINE L2 2828 3086 -227 469 106 15 0 chr3 134872757 134872823 -92651755 + AluSx SINE Alu 228 294 -16 492 229 48 0 chr3 134872911 134873016 -92651562 - MER81 DNA DNA -4 110 1 1193 298 49 32 chr3 134873174 134873667 -92650911 - L2 LINE L2 -5 3308 2808 2489 68 3 0 chr3 134874331 134874626 -92649952 - AluSp SINE Alu -17 296 1 2076 146 0 7 chr3 134874810 134875119 -92649459 - AluJb SINE Alu -5 307 1 8903 138 48 16 chr3 134875558 134875793 -92648785 - Tigger1 DNA MER2_type -855 1563 1337 2287 100 0 7 chr3 134875793 134876094 -92648484 - AluSx SINE Alu -13 299 1 8903 138 48 16 chr3 134876094 134877373 -92647205 - Tigger1 DNA MER2_type -1081 1337 1 219 262 95 65 chr3 134877632 134877800 -92646778 + L2 LINE L2 2581 2753 -561 1982 160 0 0 chr3 134878087 134878380 -92646198 + AluJb SINE Alu 3 295 -17 2243 121 3 9 chr3 134879085 134879400 -92645178 + AluSq SINE Alu 1 313 0 330 199 48 62 chr3 134879574 134879720 -92644858 + L1ME4a LINE L1 5978 6121 0 2041 120 21 0 chr3 134879720 134880003 -92644575 + AluSx SINE Alu 1 289 -23 5742 112 73 59 chr3 134880146 134880600 -92643978 - Tigger3b DNA MER2_type -1945 1083 637 1866 131 85 0 chr3 134880600 134880883 -92643695 - AluSg SINE Alu -3 307 1 5742 112 73 59 chr3 134880883 134881496 -92643082 - Tigger3b DNA MER2_type -2391 637 1 763 149 0 45 chr3 134881496 134881626 -92642952 - MER47A DNA MER2_type -236 130 7 22 35 0 0 chr3 134881767 134881796 -92642782 + AT_rich Low_complexity Low_complexity 1 29 0 2258 106 7 0 chr3 134882217 134882518 -92642060 - AluSx SINE Alu -9 303 1 27 73 0 0 chr3 134883090 134883145 -92641433 + AT_rich Low_complexity Low_complexity 1 55 0 37 0 0 0 chr3 134883373 134883410 -92641168 + AT_rich Low_complexity Low_complexity 1 37 0 271 256 8 64 chr3 134883836 134883961 -92640617 - L1ME2 LINE L1 -65 6099 5982 1272 144 72 0 chr3 134883967 134884128 -92640450 - AluJb SINE Alu -19 293 114 189 0 0 0 chr3 134884128 134884149 -92640429 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1272 144 72 0 chr3 134884149 134884181 -92640397 - AluJb SINE Alu -198 114 86 1029 198 39 0 chr3 134884232 134884414 -92640164 + MER5A DNA MER1_type 1 189 0 886 145 8 0 chr3 134884987 134885118 -92639460 - Tigger1 DNA MER2_type 0 2418 2287 279 0 0 0 chr3 134885120 134885151 -92639427 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 26 30 0 0 chr3 134885345 134885378 -92639200 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr3 134886588 134886617 -92637961 + AT_rich Low_complexity Low_complexity 1 29 0 2403 79 7 0 chr3 134887732 134888035 -92636543 + AluSp SINE Alu 2 306 -7 236 122 0 0 chr3 134888157 134888198 -92636380 - LTR54 LTR ERV1 0 510 470 1563 98 0 0 chr3 134888199 134888392 -92636186 + AluSx SINE Alu 1 193 -119 713 138 0 17 chr3 134888551 134888667 -92635911 - Tigger2 DNA MER2_type -41 2677 2564 * 995 151 19 48 chr3 134888666 134888826 -92635752 - Tigger2 DNA MER2_type -2508 210 56 2157 116 13 13 chr3 134888826 134889136 -92635442 + AluSx SINE Alu 1 310 -2 995 151 19 48 chr3 134889136 134889181 -92635397 - Tigger2 DNA MER2_type -2662 56 11 597 286 97 43 chr3 134889353 134889723 -92634855 + L1ME LINE L1 5296 5685 -436 22 35 0 0 chr3 134890499 134890528 -92634050 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr3 134891148 134891173 -92633405 + AT_rich Low_complexity Low_complexity 1 25 0 235 204 45 0 chr3 134891502 134891546 -92633032 + MER5A DNA MER1_type 4 49 -140 2606 181 70 31 chr3 134891551 134892223 -92632355 + L1 LINE L1 1063 1760 -4521 1099 170 23 5 chr3 134892336 134892719 -92631859 - LTR54 LTR ERV1 -42 468 1 333 0 0 0 chr3 134892826 134892863 -92631715 + (CA)n Simple_repeat Simple_repeat 2 38 0 26 30 0 0 chr3 134895174 134895207 -92629371 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr3 134895232 134895256 -92629322 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr3 134895317 134895352 -92629226 + AT_rich Low_complexity Low_complexity 1 35 0 568 142 26 18 chr3 134895635 134895748 -92628830 - L1ME3 LINE L1 -1 6161 6048 5128 109 6 24 chr3 134896459 134897265 -92627313 - L1P LINE L1 -4873 1273 482 6515 159 29 14 chr3 134898140 134899394 -92625184 + L1 LINE L1 3595 4866 -1484 3534 149 13 29 chr3 134899496 134900126 -92624452 - THE1-int LTR MaLR -408 1172 553 220 248 257 18 chr3 134902221 134902334 -92622244 - MIR SINE MIR -107 155 16 211 231 0 0 chr3 134902339 134902378 -92622200 + T-rich Low_complexity Low_complexity 5 43 0 5846 75 1 3 chr3 134903339 134904103 -92620475 - L1P LINE L1 -4151 1995 1233 218 296 56 16 chr3 134905039 134905164 -92619414 - MIR SINE MIR -1 261 132 408 288 71 70 chr3 134905642 134906606 -92617972 - L1M4 LINE L1 -1944 4202 3193 618 255 74 82 chr3 134906618 134907010 -92617568 - L2 LINE L2 -36 3277 2889 215 406 0 0 chr3 134907349 134907477 -92617101 + G-rich Low_complexity Low_complexity 1 128 0 349 379 23 0 chr3 134908245 134908419 -92616159 + CT-rich Low_complexity Low_complexity 3 180 0 204 283 17 50 chr3 134908373 134908493 -92616085 + (TCCCG)n Simple_repeat Simple_repeat 4 119 0 * 6062 74 0 10 chr3 134908900 134909712 -92614866 + L1P LINE L1 4105 4908 -1238 255 351 0 35 chr3 134909727 134909995 -92614583 + C-rich Low_complexity Low_complexity 1 258 0 232 255 135 50 chr3 134910383 134910524 -92614054 - MIR SINE MIR -82 180 28 2164 100 3 3 chr3 134910560 134910849 -92613729 + AluSc SINE Alu 1 289 -20 24 0 0 0 chr3 134913900 134913924 -92610654 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 134914000 134914023 -92610555 + AT_rich Low_complexity Low_complexity 1 23 0 246 128 64 0 chr3 134915447 134915541 -92609037 + (TA)n Simple_repeat Simple_repeat 1 100 0 2286 74 11 7 chr3 134916041 134916353 -92608225 + AluSq SINE Alu 1 313 0 336 213 25 25 chr3 134916406 134916486 -92608092 + MIR SINE MIR 165 244 -18 38 22 0 0 chr3 134917722 134917767 -92606811 + AT_rich Low_complexity Low_complexity 1 45 0 266 115 19 0 chr3 134917767 134917819 -92606759 + (TA)n Simple_repeat Simple_repeat 2 54 0 254 317 70 42 chr3 134918484 134918626 -92605952 + MIR SINE MIR 52 197 -65 286 303 22 14 chr3 134918892 134919097 -92605481 + L3 LINE CR1 956 1218 -359 1169 148 13 89 chr3 134919869 134920106 -92604472 + MER20 DNA MER1_type 1 219 0 189 0 0 0 chr3 134922048 134922069 -92602509 + (T)n Simple_repeat Simple_repeat 1 21 0 204 385 68 18 chr3 134922302 134922523 -92602055 + L2 LINE L2 3006 3237 -35 192 125 0 0 chr3 134922529 134922561 -92602017 + (TGGA)n Simple_repeat Simple_repeat 1 32 0 25 31 0 0 chr3 134922725 134922757 -92601821 + GC_rich Low_complexity Low_complexity 1 32 0 235 301 0 24 chr3 134922779 134922862 -92601716 + CT-rich Low_complexity Low_complexity 3 83 0 250 221 39 13 chr3 134923025 134923102 -92601476 + C-rich Low_complexity Low_complexity 4 82 0 915 218 50 27 chr3 134923882 134924144 -92600434 + L1ME4a LINE L1 5542 5809 -312 670 209 131 5 chr3 134924215 134924406 -92600172 + MIR SINE MIR 48 262 0 1064 193 27 49 chr3 134924473 134924696 -92599882 - MER20 DNA MER1_type 0 219 2 226 289 48 29 chr3 134924697 134924801 -92599777 + L1ME4a LINE L1 5960 6065 -56 2451 64 0 3 chr3 134925744 134926042 -92598536 + AluY SINE Alu 1 297 -14 235 306 47 12 chr3 134926710 134926795 -92597783 + L2 LINE L2 3226 3313 0 24 0 0 0 chr3 134927204 134927228 -92597350 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr3 134929083 134929107 -92595471 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2112 100 7 4 chr3 134929110 134929391 -92595187 - AluSx SINE Alu -30 282 1 185 292 0 0 chr3 134929771 134929819 -92594759 + MER5A DNA MER1_type 10 57 -132 319 341 29 29 chr3 134929891 134930167 -92594411 + L1M4 LINE L1 4969 5244 -902 23 33 0 0 chr3 134930169 134930199 -92594379 + AT_rich Low_complexity Low_complexity 1 30 0 211 250 176 28 chr3 134930295 134930403 -92594175 - MIR SINE MIR -71 191 68 1688 172 26 0 chr3 134930474 134930742 -92593836 + AluSx SINE Alu 1 275 -37 312 204 39 48 chr3 134931506 134931609 -92592969 - LTR67 LTR ERVL 0 557 456 1264 220 103 35 chr3 134931837 134932119 -92592459 + AluJb SINE Alu 1 301 -11 1237 110 55 81 chr3 134932883 134933119 -92591459 - MER30 DNA MER1_type 0 230 1 1858 141 10 13 chr3 134933173 134933471 -92591107 + AluSx SINE Alu 1 297 -15 293 200 169 0 chr3 134933997 134934062 -92590516 - L2 LINE L2 -6 3307 3232 1466 48 0 0 chr3 134934834 134935002 -92589576 - AluSq SINE Alu -14 299 132 2098 112 6 26 chr3 134935814 134936127 -92588451 - AluJb SINE Alu 0 312 6 2167 118 7 0 chr3 134936141 134936446 -92588132 - AluSx SINE Alu -3 309 3 562 183 71 16 chr3 134936675 134936801 -92587777 - FLAM_A SINE Alu 0 133 1 769 229 70 9 chr3 134937045 134937259 -92587319 - L1ME3A LINE L1 -5 6165 5939 2964 156 59 184 chr3 134938043 134938959 -92585619 - L1MC4 LINE L1 0 8042 7013 1879 173 0 7 chr3 134938959 134939265 -92585313 - AluJb SINE Alu -8 304 1 2964 156 59 184 chr3 134939265 134939289 -92585289 - L1MC4 LINE L1 -1029 7013 7274 1680 166 10 30 chr3 134939289 134939591 -92584987 - AluJo SINE Alu -14 298 3 2964 156 59 184 chr3 134939591 134939823 -92584755 - L1MC4 LINE L1 -767 7275 7016 1134 150 56 52 chr3 134939823 134940056 -92584522 + MER46A DNA MER2_type 1 234 -2 486 250 73 0 chr3 134941042 134941178 -92583400 - L2 LINE L2 -247 3066 2921 1368 176 113 41 chr3 134941944 134942090 -92582488 - MER58B DNA MER1_type -2079 341 207 2373 86 6 16 chr3 134942090 134942405 -92582173 + AluSx SINE Alu 1 312 0 1368 176 113 41 chr3 134942405 134942576 -92582002 - MER58B DNA MER1_type -2213 207 1 386 255 186 7 chr3 134942584 134942729 -92581849 + MER5B DNA MER1_type 1 171 -7 464 243 50 77 chr3 134943174 134943355 -92581223 - Charlie8 DNA MER1_type -2228 189 14 438 310 66 14 chr3 134943463 134943676 -92580902 + MIR SINE MIR 30 253 -9 838 167 0 0 chr3 134944098 134944230 -92580348 + FLAM_A SINE Alu 2 133 0 2065 124 42 24 chr3 134944480 134944811 -92579767 + MER1B DNA MER1_type 1 337 0 2098 111 28 3 chr3 134945878 134946167 -92578411 + AluSx SINE Alu 1 296 -16 19252 60 3 3 chr3 134946697 134950166 -92574412 + L1P LINE L1 298 3762 -2384 1898 207 8 11 chr3 134950166 134950528 -92574050 + MSTD LTR MaLR 36 396 0 2187 48 24 102 chr3 134951046 134951379 -92573199 + AluY SINE Alu 1 307 -4 683 121 0 35 chr3 134951409 134951525 -92573053 + FLAM_C SINE Alu 20 131 -12 868 169 34 94 chr3 134951557 134951943 -92572635 + L1MB7 LINE L1 5797 6123 -61 468 0 0 0 chr3 134951943 134951995 -92572583 + (TTTA)n Simple_repeat Simple_repeat 1 52 0 1939 159 46 53 chr3 134952156 134952572 -92572006 + MLT2D LTR ERVL 2 414 0 1693 173 0 23 chr3 134952597 134952897 -92571681 + AluJo SINE Alu 6 298 -14 2431 91 3 0 chr3 134953101 134953409 -92571169 + AluSg SINE Alu 1 309 -1 2147 120 0 0 chr3 134954388 134954703 -92569875 - AluSx SINE Alu 0 315 1 198 163 23 0 chr3 134955896 134955939 -92568639 + MIR SINE MIR 211 254 -8 205 338 29 22 chr3 134956027 134956163 -92568415 - L2 LINE L2 -217 3055 2919 43088 55 4 2 chr3 134956167 134962052 -92562526 + L1PA5 LINE L1 8 5901 -253 23 0 0 0 chr3 134962181 134962204 -92562374 + GC_rich Low_complexity Low_complexity 1 23 0 415 312 98 56 chr3 134962461 134962820 -92561758 - MER57-int LTR ERV1 -2019 2628 2255 1623 175 29 4 chr3 134963285 134963565 -92561013 - AluJo SINE Alu -25 287 1 225 0 0 0 chr3 134963565 134963590 -92560988 + (TTTTG)n Simple_repeat Simple_repeat 3 27 0 1691 157 25 21 chr3 134963590 134963871 -92560707 - AluSx SINE Alu -30 282 1 1753 139 37 24 chr3 134963943 134964237 -92560341 - AluJb SINE Alu -14 298 1 299 317 63 30 chr3 134964678 134964946 -92559632 - MER57-int LTR ERV1 -3151 3650 3374 784 297 41 62 chr3 134965729 134966164 -92558414 - MER57-int LTR ERV1 -4064 583 158 2102 128 19 50 chr3 134967413 134967789 -92556789 + THE1B LTR MaLR 1 364 0 11765 100 6 3 chr3 134967789 134969365 -92555213 + THE1B-int LTR MaLR 1 1580 0 2100 116 24 66 chr3 134969365 134969745 -92554833 + THE1B LTR MaLR 1 364 0 2126 143 10 0 chr3 134969772 134970079 -92554499 - AluSx SINE Alu -2 310 1 198 0 0 0 chr3 134971049 134971071 -92553507 + (A)n Simple_repeat Simple_repeat 1 22 0 954 263 91 54 chr3 134971235 134971664 -92552914 - MER65C LTR ERV1 -12 449 5 2051 241 103 29 chr3 134971683 134972212 -92552366 + MLT1E LTR MaLR 1 574 -19 1832 179 26 45 chr3 134972212 134972593 -92551985 - MLT1A2 LTR MaLR 0 374 1 2051 241 103 29 chr3 134972593 134972615 -92551963 + MLT1E LTR MaLR 574 593 0 1456 207 68 58 chr3 134972726 134972770 -92551808 + LTR40b LTR ERVL 1 43 -419 2456 78 0 0 chr3 134972770 134973063 -92551515 - AluSc SINE Alu -16 293 1 1456 207 68 58 chr3 134973063 134973394 -92551184 + LTR40b LTR ERVL 43 383 -79 2067 124 58 22 chr3 134973394 134973756 -92550822 + THE1C LTR MaLR 1 375 0 1456 207 68 58 chr3 134973756 134973789 -92550789 + LTR40b LTR ERVL 383 414 -48 25 0 0 0 chr3 134974716 134974741 -92549837 + AT_rich Low_complexity Low_complexity 1 25 0 943 99 8 8 chr3 134974741 134974872 -92549706 - AluSg/x SINE Alu -26 286 156 973 323 27 31 chr3 134975115 134975595 -92548983 - MER57-int LTR ERV1 -826 6711 6234 2152 119 7 0 chr3 134975951 134976245 -92548333 + AluSg SINE Alu 1 296 -14 351 125 47 0 chr3 134977899 134977963 -92546615 + AluS SINE Alu 1 67 -241 259 178 0 0 chr3 134978340 134978385 -92546193 + CT-rich Low_complexity Low_complexity 1 45 0 368 308 122 27 chr3 134979199 134979420 -92545158 - MIR SINE MIR 0 262 21 1943 136 7 14 chr3 134979596 134979891 -92544687 + AluSx SINE Alu 5 297 -15 259 43 22 43 chr3 134979905 134979951 -92544627 + (GGGAA)n Simple_repeat Simple_repeat 3 47 0 559 307 40 0 chr3 134980650 134980826 -92543752 + MIR SINE MIR 56 238 -24 824 194 33 4 chr3 134980924 134981095 -92543483 + MER3 DNA MER1_type 9 132 -77 2275 97 7 3 chr3 134981097 134981396 -92543182 - AluSq SINE Alu -13 300 1 663 240 11 28 chr3 134981414 134981593 -92542985 - MER5B DNA MER1_type 0 178 3 190 313 41 41 chr3 134982237 134982384 -92542194 + L2 LINE L2 2828 2974 -298 2690 40 0 0 chr3 134982666 134982965 -92541613 + AluY SINE Alu 2 300 -11 217 247 58 105 chr3 134983118 134983308 -92541270 - MIR SINE MIR -12 250 70 571 242 54 7 chr3 134983626 134983775 -92540803 + MLT1J LTR MaLR 20 175 -336 195 186 0 0 chr3 134983930 134983973 -92540605 + GA-rich Low_complexity Low_complexity 1 43 0 313 148 37 0 chr3 134987361 134987415 -92537163 - Alu SINE Alu -246 56 1 315 260 144 0 chr3 134987743 134987847 -92536731 + L2 LINE L2 3149 3267 -5 2116 134 3 0 chr3 134990174 134990480 -92534098 + AluSq SINE Alu 1 307 -6 214 209 233 12 chr3 134990684 134990770 -92533808 - MIR SINE MIR 0 262 158 283 176 0 0 chr3 134990770 134990821 -92533757 - MER116 DNA Mariner -29 51 1 216 248 266 18 chr3 134990821 134990930 -92533648 - MIR SINE MIR -111 151 16 191 128 51 0 chr3 134990939 134990978 -92533600 + T-rich Low_complexity Low_complexity 4 44 0 449 251 128 17 chr3 134992470 134992639 -92531939 + MIR SINE MIR 52 249 -13 1945 102 38 0 chr3 134992639 134992903 -92531675 - AluY SINE Alu -37 274 1 449 251 128 17 chr3 134992903 134992915 -92531663 + MIR SINE MIR 249 258 -4 2069 132 3 7 chr3 134993421 134993717 -92530861 + AluSx SINE Alu 1 295 -17 456 283 18 9 chr3 134994078 134994191 -92530387 - MER81 DNA DNA 0 114 1 517 184 178 37 chr3 134994213 134994376 -92530202 + MER5A DNA MER1_type 4 189 0 5383 74 19 0 chr3 134995243 134995921 -92528657 + LTR8 LTR ERV1 1 691 0 1721 91 133 11 chr3 134996116 134996379 -92528199 - AluSx SINE Alu -17 295 1 2330 112 3 0 chr3 134996538 134996841 -92527737 - AluSx SINE Alu -8 304 1 3129 129 42 59 chr3 134997684 134997715 -92526863 - L1MB2 LINE L1 -1 6170 6140 2202 69 33 4 chr3 134997715 134998016 -92526562 + AluSq SINE Alu 1 309 0 3129 129 42 59 chr3 134998016 134998609 -92525969 - L1MB2 LINE L1 -31 6140 5556 392 220 40 0 chr3 134999029 134999129 -92525449 - MIR SINE MIR -59 203 100 225 0 0 0 chr3 134999469 134999494 -92525084 + (CA)n Simple_repeat Simple_repeat 2 26 0 287 302 23 12 chr3 134999843 134999929 -92524649 + MIR3 SINE MIR 79 165 -43 393 353 153 24 chr3 134999993 135000452 -92524126 - L3 LINE CR1 -126 1451 934 2371 94 7 3 chr3 135000625 135000934 -92523644 - AluSq SINE Alu -2 311 2 321 286 48 0 chr3 135001147 135001252 -92523326 - MIR3 SINE MIR -16 192 83 2225 99 0 7 chr3 135001408 135001717 -92522861 + AluSg SINE Alu 1 307 0 189 175 193 0 chr3 135002596 135002653 -92521925 + MIR SINE MIR 46 113 -95 630 245 58 69 chr3 135003477 135003824 -92520754 + L2 LINE L2 2968 3310 -3 219 236 9 91 chr3 135003846 135003956 -92520622 + MIR SINE MIR 61 161 -101 2224 99 0 7 chr3 135005632 135005941 -92518637 - AluSg SINE Alu 0 307 1 321 286 48 0 chr3 135006097 135006202 -92518376 + MIR3 SINE MIR 83 192 -16 1875 126 61 7 chr3 135006415 135006708 -92517870 + AluSx SINE Alu 2 310 -2 206 373 137 11 chr3 135006743 135007094 -92517484 + L2 LINE L2 2313 2707 -607 2307 132 8 27 chr3 135007637 135008008 -92516570 + THE1B LTR MaLR 1 364 0 1057 164 22 78 chr3 135008223 135008289 -92516289 + MER58A DNA MER1_type 6 74 -2346 2373 108 0 6 chr3 135008289 135008604 -92515974 + AluSq SINE Alu 1 313 0 1057 164 22 78 chr3 135008604 135008769 -92515809 + MER58A DNA MER1_type 74 224 0 2279 114 0 0 chr3 135009111 135009410 -92515168 + AluSx SINE Alu 1 299 -13 327 282 100 58 chr3 135009895 135010154 -92514424 + MARNA DNA Mariner 269 538 -48 1514 146 14 14 chr3 135010166 135010446 -92514132 + AluSg SINE Alu 1 280 -30 1695 174 13 16 chr3 135010524 135010834 -92513744 - AluJo SINE Alu -3 309 1 2012 153 42 0 chr3 135010945 135011278 -92513300 + MER7A DNA MER2_type 1 345 -1 2116 134 3 0 chr3 135011716 135012022 -92512556 + AluSq SINE Alu 1 307 -6 214 209 233 12 chr3 135012226 135012312 -92512266 - MIR SINE MIR 0 262 158 283 176 0 0 chr3 135012312 135012363 -92512215 - MER116 DNA Mariner -29 51 1 216 248 266 18 chr3 135012363 135012472 -92512106 - MIR SINE MIR -111 151 16 191 128 51 0 chr3 135012481 135012520 -92512058 + T-rich Low_complexity Low_complexity 4 44 0 449 251 128 17 chr3 135014012 135014181 -92510397 + MIR SINE MIR 52 249 -13 1945 102 38 0 chr3 135014181 135014445 -92510133 - AluY SINE Alu -37 274 1 449 251 128 17 chr3 135014445 135014457 -92510121 + MIR SINE MIR 249 258 -4 2069 132 3 7 chr3 135014963 135015259 -92509319 + AluSx SINE Alu 1 295 -17 456 283 18 9 chr3 135015620 135015733 -92508845 - MER81 DNA DNA 0 114 1 517 184 178 37 chr3 135015755 135015918 -92508660 + MER5A DNA MER1_type 4 189 0 5400 72 18 0 chr3 135016783 135017462 -92507116 + LTR8 LTR ERV1 1 691 0 1721 91 133 11 chr3 135017657 135017920 -92506658 - AluSx SINE Alu -17 295 1 2330 112 3 0 chr3 135018079 135018382 -92506196 - AluSx SINE Alu -8 304 1 2506 86 0 6 chr3 135019256 135019571 -92505007 + AluSq SINE Alu 1 313 0 989 142 25 12 chr3 135019574 135019736 -92504842 + MER58B DNA MER1_type 178 341 0 2279 114 0 0 chr3 135020078 135020377 -92504201 + AluSx SINE Alu 1 299 -13 346 292 92 54 chr3 135020866 135021126 -92503452 + MARNA DNA Mariner 269 538 -48 2437 87 0 3 chr3 135021138 135021447 -92503131 + AluSg SINE Alu 1 308 -2 393 353 153 24 chr3 135021620 135022079 -92502499 + L3 LINE CR1 934 1451 -126 287 302 23 12 chr3 135022143 135022229 -92502349 - MIR3 SINE MIR -43 165 79 225 0 0 0 chr3 135022578 135022603 -92501975 + (TG)n Simple_repeat Simple_repeat 2 26 0 392 220 40 0 chr3 135022943 135023043 -92501535 + MIR SINE MIR 100 203 -59 1318 114 81 5 chr3 135023463 135023673 -92500905 + L1MB7 LINE L1 5556 5781 -390 248 276 0 16 chr3 135023763 135024010 -92500568 + G-rich Low_complexity Low_complexity 1 306 0 21 0 0 0 chr3 135024178 135024199 -92500379 + GC_rich Low_complexity Low_complexity 1 21 0 855 178 10 107 chr3 135024331 135024548 -92500030 + L1MB7 LINE L1 5927 6112 -62 1986 131 3 0 chr3 135024548 135024883 -92499695 - AluSx SINE Alu 0 336 1 855 178 10 107 chr3 135024883 135024918 -92499660 + L1MB7 LINE L1 6112 6149 -25 468 116 74 21 chr3 135026438 135026533 -92498045 + MER5A DNA MER1_type 9 108 -81 1552 182 61 3 chr3 135026550 135026846 -92497732 - L1MC1 LINE L1 -7 6326 6014 184 304 72 0 chr3 135027215 135027284 -92497294 + L2 LINE L2 3240 3313 0 386 286 68 8 chr3 135028844 135028977 -92495601 + MIR3 SINE MIR 43 183 -25 2301 108 0 10 chr3 135029924 135030229 -92494349 + AluSx SINE Alu 1 302 -10 653 218 0 0 chr3 135030486 135030596 -92493982 - AluJb SINE Alu -18 294 185 568 126 0 0 chr3 135031730 135031817 -92492761 + AluSg/x SINE Alu 216 302 -8 1270 242 43 60 chr3 135031841 135032259 -92492319 + Charlie2b DNA MER1_type 598 1008 -1774 269 287 53 0 chr3 135032277 135032371 -92492207 + Charlie2b DNA MER1_type 2635 2733 -49 2295 107 3 0 chr3 135032376 135032676 -92491902 - AluSg SINE Alu -9 301 1 231 88 0 0 chr3 135033077 135033111 -92491467 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 1751 156 10 28 chr3 135033123 135033435 -92491143 + AluSx SINE Alu 1 307 0 22 70 0 0 chr3 135033585 135033628 -92490950 + AT_rich Low_complexity Low_complexity 1 43 0 253 261 8 25 chr3 135033687 135033806 -92490772 + L1M4 LINE L1 5100 5216 -930 27 0 0 0 chr3 135034593 135034620 -92489958 + AT_rich Low_complexity Low_complexity 1 27 0 4759 134 27 5 chr3 135034623 135035374 -92489204 - L1PA5 LINE L1 -1 6153 5387 257 312 161 0 chr3 135036019 135036112 -92488466 - L2 LINE L2 -18 3254 3147 298 274 103 8 chr3 135036300 135036417 -92488161 - MLT1L LTR MaLR -63 552 425 1003 293 147 33 chr3 135036926 135037080 -92487498 - MLT1L LTR MaLR -6 609 474 1696 207 3 0 chr3 135037080 135037384 -92487194 + AluJo SINE Alu 1 305 -7 1003 293 147 33 chr3 135037384 135037772 -92486806 - MLT1L LTR MaLR -141 474 5 574 189 204 48 chr3 135037864 135038134 -92486444 - MER5C DNA MER1_type 0 324 13 225 360 70 20 chr3 135038173 135038373 -92486205 + L2 LINE L2 2841 3050 -222 793 164 0 8 chr3 135038386 135038508 -92486070 - FLAM_C SINE Alu -8 125 5 361 277 0 10 chr3 135039157 135039258 -92485320 + MIR SINE MIR 21 120 -142 225 308 0 0 chr3 135039875 135039953 -92484625 + L2 LINE L2 2897 2974 -298 251 174 0 0 chr3 135040188 135040234 -92484344 + L2 LINE L2 3263 3308 -5 938 93 0 7 chr3 135040464 135040604 -92483974 + (TTTC)n Simple_repeat Simple_repeat 2 140 0 1908 132 0 14 chr3 135040606 135040886 -92483692 - AluSx SINE Alu -32 280 5 454 266 147 37 chr3 135041062 135041280 -92483298 + MIR SINE MIR 21 262 0 289 217 0 43 chr3 135041893 135041962 -92482616 + L2 LINE L2 3248 3313 0 22 35 0 0 chr3 135042135 135042164 -92482414 + AT_rich Low_complexity Low_complexity 1 29 0 251 206 254 0 chr3 135042261 135042324 -92482254 + L3 LINE CR1 1448 1526 -51 237 324 42 49 chr3 135042468 135042610 -92481968 - MIR SINE MIR -45 217 77 198 278 19 19 chr3 135042660 135042714 -92481864 - MIR3 SINE MIR -29 179 126 22 0 0 0 chr3 135043668 135043690 -92480888 + AT_rich Low_complexity Low_complexity 1 22 0 1253 154 0 33 chr3 135044142 135044356 -92480222 - AluJb SINE Alu -104 208 2 1986 132 4 4 chr3 135044588 135044869 -92479709 + AluSg SINE Alu 1 281 -29 1615 239 44 30 chr3 135044947 135045450 -92479128 - L2 LINE L2 0 3313 2804 2752 236 69 32 chr3 135045459 135046299 -92478279 - L2 LINE L2 -776 2538 1668 233 308 32 0 chr3 135046512 135046595 -92477983 - MIR SINE MIR -85 123 36 193 290 116 0 chr3 135046800 135046869 -92477709 + MIR SINE MIR 184 260 -2 201 292 0 0 chr3 135047038 135047086 -92477492 - L2 LINE L2 -2 3270 3223 207 163 0 47 chr3 135050270 135050313 -92474265 + T-rich Low_complexity Low_complexity 5 45 0 1708 189 0 29 chr3 135050356 135050669 -92473909 - AluJb SINE Alu -8 304 1 200 290 0 43 chr3 135050692 135050830 -92473748 + T-rich Low_complexity Low_complexity 4 135 0 439 301 74 12 chr3 135050980 135051143 -92473435 + MIR3 SINE MIR 3 175 -33 2517 61 0 3 chr3 135051426 135051738 -92472840 - AluY SINE Alu 0 311 1 458 275 188 23 chr3 135052982 135053328 -92471250 + L3 LINE CR1 1173 1575 -2 203 306 12 35 chr3 135053373 135053458 -92471120 + MIR SINE MIR 125 207 -55 651 205 96 15 chr3 135054744 135054948 -92469630 + MIR SINE MIR 24 249 -13 504 193 77 54 chr3 135055270 135055472 -92469106 - MLT1F LTR MaLR 0 542 354 1575 229 90 51 chr3 135055533 135056025 -92468553 - L1ME3A LINE L1 -341 5829 5358 2126 117 23 13 chr3 135056025 135056334 -92468244 - AluSx SINE Alu 0 312 1 1575 229 90 51 chr3 135056334 135056921 -92467657 - L1ME3A LINE L1 -812 5358 4705 537 134 61 0 chr3 135056922 135057004 -92467574 - Tigger3(Golem) DNA MER2_type -2942 87 1 420 293 160 9 chr3 135057004 135057229 -92467349 + L2 LINE L2 2534 2792 -522 371 80 0 0 chr3 135057321 135057371 -92467207 + Alu SINE Alu 246 295 -7 1703 69 32 5 chr3 135058354 135058571 -92466007 - AluY SINE Alu -5 306 84 245 301 121 18 chr3 135058925 135059091 -92465487 - L2 LINE L2 -844 2470 2288 731 274 96 0 chr3 135060069 135060299 -92464279 + MIR SINE MIR 1 252 -10 1467 132 15 77 chr3 135061595 135061867 -92462711 - MER1B DNA MER1_type 0 339 85 1144 263 34 0 chr3 135062373 135062727 -92461851 + L1M4 LINE L1 3190 3555 -2591 280 155 226 36 chr3 135062768 135062852 -92461726 - L2 LINE L2 0 3313 3214 2426 97 7 0 chr3 135063491 135063800 -92460778 - AluSq SINE Alu -2 311 1 930 166 53 12 chr3 135063983 135064152 -92460426 + MER45A DNA AcHobo 1 176 -2 779 261 55 0 chr3 135064211 135064429 -92460149 + MIR SINE MIR 7 236 -26 921 190 50 150 chr3 135064704 135064868 -92459710 - MER113 DNA MER1_type? -3 518 339 2182 70 42 7 chr3 135064868 135065153 -92459425 - AluSq SINE Alu -18 295 1 921 190 50 150 chr3 135065153 135065409 -92459169 - MER113 DNA MER1_type? -182 339 140 1979 130 0 65 chr3 135065574 135065898 -92458680 - AluSx SINE Alu -9 303 1 653 248 89 37 chr3 135066483 135066911 -92457667 + LTR33 LTR ERVL 23 521 0 222 253 40 13 chr3 135068764 135068839 -92455739 + MIR SINE MIR 34 110 -152 579 242 18 12 chr3 135069872 135070037 -92454541 - MER5B DNA MER1_type -11 167 2 264 323 92 12 chr3 135070327 135070491 -92454087 + L2 LINE L2 2665 2841 -473 507 269 112 4 chr3 135070800 135071042 -92453536 + LTR33A LTR ERVL 256 523 0 354 272 0 10 chr3 135071980 135072083 -92452495 + MIR SINE MIR 56 157 -105 2260 92 0 3 chr3 135072090 135072373 -92452205 + AluSx SINE Alu 1 282 -30 216 0 0 0 chr3 135072376 135072400 -92452178 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 247 125 34 80 chr3 135073452 135073540 -92451038 + CT-rich Low_complexity Low_complexity 3 86 0 183 42 0 0 chr3 135073543 135073567 -92451011 + (CCCCG)n Simple_repeat Simple_repeat 1 24 0 222 369 57 8 chr3 135073689 135073811 -92450767 - L2 LINE L2 0 3272 3145 300 289 232 9 chr3 135074346 135074557 -92450021 + MIR SINE MIR 4 261 -1 1880 152 7 10 chr3 135075758 135076060 -92448518 - AluJb SINE Alu -11 301 1 1739 152 56 34 chr3 135076278 135076686 -92447892 - SVA Other Other -538 848 432 387 221 41 76 chr3 135076818 135076963 -92447615 + L2 LINE L2 2952 3091 -222 956 151 95 0 chr3 135076973 135077152 -92447426 + MER3 DNA MER1_type 3 198 -11 576 240 16 0 chr3 135077212 135077333 -92447245 + L2 LINE L2 3191 3313 0 185 353 138 0 chr3 135077331 135077447 -92447131 - MIR3 SINE MIR -71 137 6 * 513 190 44 70 chr3 135078318 135078476 -92446102 + MIR SINE MIR 66 219 -43 24 0 0 0 chr3 135078827 135078851 -92445727 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr3 135078857 135078883 -92445695 + AT_rich Low_complexity Low_complexity 1 26 0 370 274 0 0 chr3 135080078 135080180 -92444398 + MIR SINE MIR 56 157 -105 2359 88 14 3 chr3 135080187 135080484 -92444094 + AluSq SINE Alu 1 300 -13 859 107 67 7 chr3 135080484 135080633 -92443945 + L1MA8 LINE L1 6131 6288 -3 2424 78 0 10 chr3 135080747 135081054 -92443524 - AluSp SINE Alu -9 304 1 1013 89 48 0 chr3 135081298 135081444 -92443134 - L1PA12 LINE L1 0 6168 6016 1731 151 34 14 chr3 135081631 135081923 -92442655 + AluJo SINE Alu 1 298 -14 6934 154 53 57 chr3 135082448 135082692 -92441886 - L1MCa LINE L1 -4953 1473 1230 189 0 0 0 chr3 135082692 135082713 -92441865 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 6934 154 53 57 chr3 135082713 135083926 -92440652 - L1MCa LINE L1 -5196 1230 21 1409 209 58 29 chr3 135083926 135084271 -92440307 + LTR52 LTR ERVL 64 418 -3 2163 127 0 0 chr3 135084315 135084607 -92439971 + AluSx SINE Alu 1 292 -20 2056 219 70 31 chr3 135084607 135085078 -92439500 + L1MB7 LINE L1 5598 6096 -88 2413 81 0 3 chr3 135085078 135085375 -92439203 - AluSc SINE Alu -13 296 1 2056 219 70 31 chr3 135085375 135085459 -92439119 + L1MB7 LINE L1 6096 6175 -9 376 298 59 48 chr3 135085757 135086029 -92438549 + L1ME LINE L1 4556 4830 -1316 746 139 0 9 chr3 135086313 135086428 -92438150 - Tigger2 DNA MER2_type -51 2667 2554 * 995 151 19 48 chr3 135086427 135086587 -92437991 - Tigger2 DNA MER2_type -2508 210 56 2184 117 13 10 chr3 135086587 135086895 -92437683 + AluSx SINE Alu 1 309 -3 995 151 19 48 chr3 135086895 135086940 -92437638 - Tigger2 DNA MER2_type -2662 56 11 799 280 124 28 chr3 135087112 135087572 -92437006 + L1ME LINE L1 5296 5799 -322 2256 113 0 3 chr3 135087657 135087968 -92436610 - AluSg SINE Alu 0 310 1 21 82 0 0 chr3 135088075 135088124 -92436454 + AT_rich Low_complexity Low_complexity 1 49 0 1872 166 7 0 chr3 135088136 135088431 -92436147 - AluSx SINE Alu -15 297 1 757 254 34 48 chr3 135089569 135089920 -92434658 - L1MC4 LINE L1 0 8042 7697 898 255 91 37 chr3 135089922 135090071 -92434507 - L1MC4 LINE L1 -511 7531 7391 1895 162 120 118 chr3 135090071 135090298 -92434280 - MLT1E2 LTR MaLR 0 626 401 2115 110 0 58 chr3 135090298 135090625 -92433953 + AluSx SINE Alu 1 308 -4 1895 162 120 118 chr3 135090625 135091022 -92433556 - MLT1E2 LTR MaLR -225 401 1 898 255 91 37 chr3 135091022 135091300 -92433278 - L1MC4 LINE L1 -651 7391 7081 24 53 0 0 chr3 135091342 135091380 -92433198 + AT_rich Low_complexity Low_complexity 1 38 0 2081 175 30 14 chr3 135091478 135091913 -92432665 - L1MB2 LINE L1 -2 6169 5728 235 235 262 13 chr3 135092051 135092200 -92432378 - MER20 DNA MER1_type -4 215 30 630 95 0 21 chr3 135092754 135092849 -92431729 + AluSg/x SINE Alu 214 306 -4 9467 195 33 27 chr3 135093061 135093147 -92431431 + L1 LINE L1 1765 1849 -4297 186 43 0 0 chr3 135093147 135093170 -92431408 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 9467 195 33 27 chr3 135093170 135095537 -92429041 + L1 LINE L1 1849 4173 -1973 1859 139 30 0 chr3 135095540 135095806 -92428772 + AluSx SINE Alu 1 274 -38 972 165 24 18 chr3 135095811 135095975 -92428603 + FRAM SINE Alu 1 158 -18 5376 119 29 50 chr3 135096005 135096971 -92427607 + L1MA5 LINE L1 5345 6290 -10 300 27 0 0 chr3 135097067 135097104 -92427474 + (TG)n Simple_repeat Simple_repeat 1 37 0 579 242 18 12 chr3 135099599 135099764 -92424814 - MER5B DNA MER1_type -11 167 2 264 323 92 12 chr3 135100054 135100218 -92424360 + L2 LINE L2 2665 2841 -473 507 269 112 4 chr3 135100527 135100769 -92423809 + LTR33A LTR ERVL 256 523 0 619 301 19 15 chr3 135101705 135101814 -92422764 + MIR SINE MIR 56 168 -94 2414 91 0 0 chr3 135101814 135102110 -92422468 + AluSx SINE Alu 1 296 -16 619 301 19 15 chr3 135102110 135102206 -92422372 + MIR SINE MIR 168 262 0 934 206 51 126 chr3 135102308 135102697 -92421881 + MLT1A2 LTR MaLR 15 374 0 2254 109 0 0 chr3 135102720 135103031 -92421547 + AluSq SINE Alu 1 311 -2 1727 159 7 23 chr3 135103298 135103606 -92420972 + AluJb SINE Alu 1 303 -9 2209 106 0 6 chr3 135103616 135103928 -92420650 + AluSx SINE Alu 1 310 -2 933 79 0 0 chr3 135104530 135104657 -92419921 + (TTC)n Simple_repeat Simple_repeat 2 128 0 777 194 14 0 chr3 135104663 135104807 -92419771 - FRAM SINE Alu -30 146 1 407 311 12 6 chr3 135104921 135105092 -92419486 + MIR SINE MIR 23 197 -65 327 362 24 8 chr3 135105772 135105899 -92418679 + MIR3 SINE MIR 4 132 -76 698 290 38 17 chr3 135106068 135106306 -92418272 - MIR SINE MIR -15 247 5 233 216 57 34 chr3 135106552 135106640 -92417938 + MER104 DNA Tc2 3 92 -88 2064 151 0 0 chr3 135108973 135109285 -92415293 - AluSx SINE Alu 0 312 1 23 33 0 0 chr3 135110204 135110234 -92414344 + AT_rich Low_complexity Low_complexity 1 30 0 1663 99 11 50 chr3 135110894 135111176 -92413402 - AluSx SINE Alu -2 310 40 808 276 9 13 chr3 135111652 135111880 -92412698 + L2 LINE L2 2444 2670 -644 399 202 158 44 chr3 135111876 135111990 -92412588 + L2 LINE L2 3187 3313 0 * 2233 91 0 10 chr3 135112115 135112423 -92412155 - AluY SINE Alu -6 305 1 2338 66 0 0 chr3 135112832 135113133 -92411445 - AluY SINE Alu -10 301 1 252 245 108 39 chr3 135113459 135113561 -92411017 - MIR3 SINE MIR -22 186 78 2285 75 0 0 chr3 135113958 135114250 -92410328 + AluY SINE Alu 1 292 -19 290 241 112 52 chr3 135114325 135114441 -92410137 - MIR SINE MIR 0 262 140 654 257 116 55 chr3 135114442 135114753 -92409825 - LTR16C LTR ERVL -2 489 160 208 243 54 99 chr3 135114753 135114864 -92409714 - MIR SINE MIR -57 205 100 5540 176 15 22 chr3 135114868 135116909 -92407669 + L1PA16 LINE L1 4125 6145 -21 323 274 58 2 chr3 135117587 135117714 -92406864 - MIR SINE MIR -65 143 6 513 323 106 6 chr3 135118159 135118320 -92406258 - MER91A DNA MER1_type -8 188 12 909 92 13 13 chr3 135118448 135118600 -92405978 + (TTTC)n Simple_repeat Simple_repeat 1 152 0 444 252 76 42 chr3 135118608 135118727 -92405851 - L2 LINE L2 -4 3268 3146 495 333 99 6 chr3 135120302 135120464 -92404114 - MER91A DNA MER1_type -8 188 12 930 86 13 13 chr3 135120591 135120743 -92403835 + (TTTC)n Simple_repeat Simple_repeat 1 152 0 457 244 76 42 chr3 135120751 135120870 -92403708 - L2 LINE L2 -4 3268 3146 1917 157 37 70 chr3 135122384 135122785 -92401793 + MLT1B LTR MaLR 1 388 -2 303 169 90 11 chr3 135124158 135124247 -92400331 - L1MB3 LINE L1 -1 6182 6087 3121 108 14 30 chr3 135124252 135124745 -92399833 - L1MA4 LINE L1 -281 6019 5535 325 278 60 57 chr3 135124760 135124880 -92399698 + L1M4 LINE L1 2875 2993 -3153 1624 184 63 39 chr3 135124880 135125244 -92399334 + MER93b LTR ERV1 1 373 0 325 278 60 57 chr3 135125244 135125422 -92399156 + L1M4 LINE L1 2993 3174 -2972 1541 251 94 48 chr3 135125431 135126269 -92398309 + L2 LINE L2 2410 3277 -36 567 275 125 77 chr3 135126287 135127261 -92397317 + L1M4 LINE L1 3199 4219 -1927 390 263 69 114 chr3 135128274 135128563 -92396015 - L2 LINE L2 -21 3251 2976 222 37 0 0 chr3 135128890 135128917 -92395661 + (CA)n Simple_repeat Simple_repeat 1 27 0 333 312 182 7 chr3 135129618 135129772 -92394806 - MIR SINE MIR -50 212 32 22 0 0 0 chr3 135130528 135130550 -92394028 + AT_rich Low_complexity Low_complexity 1 22 0 309 324 57 0 chr3 135131331 135131436 -92393142 + L2 LINE L2 3112 3222 -50 267 308 96 62 chr3 135131518 135131664 -92392914 - MIR3 SINE MIR -11 197 47 382 295 133 0 chr3 135132042 135132147 -92392431 - MIR SINE MIR -140 122 4 1418 290 62 2 chr3 135132354 135132789 -92391789 - LTR16B LTR ERVL 0 464 4 254 319 59 8 chr3 135132940 135133059 -92391519 - MER5A DNA MER1_type -22 167 43 * 331 261 99 9 chr3 135132969 135133080 -92391498 + MER5A DNA MER1_type 68 188 -1 463 288 8 8 chr3 135133325 135133443 -92391135 + L2 LINE L2 3182 3299 -14 746 198 8 0 chr3 135133608 135133729 -92390849 - AluJb SINE Alu -58 254 133 1493 189 7 14 chr3 135133729 135134066 -92390512 - AluJo SINE Alu 0 335 1 1546 154 9 103 chr3 135134269 135134600 -92389978 - AluJb SINE Alu 0 302 3 2034 181 96 16 chr3 135134930 135135367 -92389211 + MER70A LTR ERVL 1 472 0 588 223 187 6 chr3 135135959 135136125 -92388453 - MIR SINE MIR -14 248 53 304 217 0 43 chr3 135137313 135137382 -92387196 + MER21B LTR ERV1 3 68 -795 3463 212 73 33 chr3 135137410 135138223 -92386355 + MER21B LTR ERV1 19 863 0 328 257 110 0 chr3 135138240 135138349 -92386229 + MIR3 SINE MIR 45 165 -43 200 35 35 0 chr3 135138741 135138770 -92385808 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 204 40 0 0 chr3 135139020 135139045 -92385533 + (TC)n Simple_repeat Simple_repeat 2 26 0 293 200 53 0 chr3 135139065 135139140 -92385438 - L2 LINE L2 -1919 1395 1317 228 343 15 58 chr3 135139721 135139858 -92384720 - L2 LINE L2 -179 3093 2963 254 260 10 62 chr3 135139975 135140071 -92384507 - L2 LINE L2 -1 3312 3222 1332 274 42 6 chr3 135140362 135140694 -92383884 + LTR16C LTR ERVL 148 491 0 280 248 135 50 chr3 135142856 135142997 -92381581 - MIR SINE MIR -82 180 28 2191 105 0 6 chr3 135143033 135143346 -92381232 + AluY SINE Alu 1 311 0 1981 147 59 43 chr3 135143795 135144169 -92380409 + MLT1B LTR MaLR 1 380 -10 2079 122 0 0 chr3 135144307 135144601 -92379977 - AluSx SINE Alu -18 294 1 872 138 84 25 chr3 135144716 135144919 -92379659 - L1MA7 LINE L1 0 6291 6077 1574 170 0 50 chr3 135144974 135145177 -92379401 - AluJo SINE Alu -2 310 127 1953 180 6 6 chr3 135145177 135145510 -92379068 - MER1B DNA MER1_type -2 335 3 1574 170 0 50 chr3 135145510 135145624 -92378954 - AluJo SINE Alu -185 127 9 639 222 94 90 chr3 135146174 135146408 -92378170 - MIR SINE MIR -14 248 14 194 269 231 9 chr3 135146586 135146694 -92377884 - MIR SINE MIR -65 143 33 513 170 95 68 chr3 135146746 135146863 -92377715 + MIR SINE MIR 88 211 -51 2382 79 0 0 chr3 135146863 135147166 -92377412 + AluSx SINE Alu 1 303 -9 513 170 95 68 chr3 135147166 135147195 -92377383 + MIR SINE MIR 211 238 -24 271 235 59 15 chr3 135148876 135148944 -92375634 + MIR SINE MIR 127 197 -65 27 29 0 0 chr3 135149163 135149197 -92375381 + AT_rich Low_complexity Low_complexity 1 34 0 275 263 0 0 chr3 135149209 135149266 -92375312 - L1ME1 LINE L1 -98 6068 6012 257 292 34 0 chr3 135149266 135149355 -92375223 + MARNA DNA Mariner 266 357 -229 438 307 52 22 chr3 135149377 135149608 -92374970 - MER34 LTR ERV1 -21 521 284 2126 238 85 12 chr3 135149838 135150401 -92374177 - LTR31 LTR ERV1 -15 604 1 284 319 11 0 chr3 135150448 135150542 -92374036 - MER34 LTR ERV1 -447 95 1 1785 153 30 0 chr3 135150760 135151061 -92373517 + AluJb SINE Alu 1 310 -2 532 303 17 67 chr3 135151131 135151191 -92373387 + MIR SINE MIR 23 84 -178 2317 82 3 0 chr3 135151191 135151494 -92373084 + AluSg SINE Alu 1 304 -6 532 303 17 67 chr3 135151494 135151671 -92372907 + MIR SINE MIR 84 248 -14 450 259 50 29 chr3 135151932 135152071 -92372507 - MLT1L LTR MaLR -53 562 421 227 295 0 16 chr3 135152568 135152629 -92371949 - L2 LINE L2 -12 3301 3242 442 198 0 0 chr3 135152994 135153080 -92371498 - L1MA10 LINE L1 0 6334 6249 2366 129 46 41 chr3 135153148 135153560 -92371018 + MLT2D LTR ERVL 1 414 0 2231 91 0 11 chr3 135153585 135153871 -92370707 + AluSq SINE Alu 6 288 -25 186 43 0 0 chr3 135153877 135153900 -92370678 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2319 129 9 3 chr3 135154132 135154465 -92370113 + MER72 LTR ERV1 204 538 -184 915 129 0 0 chr3 135154466 135154610 -92369968 + AluSg/x SINE Alu 159 302 0 1137 146 16 10 chr3 135154610 135154802 -92369776 + MER72 LTR ERV1 530 722 0 2287 109 3 0 chr3 135154807 135155109 -92369469 - AluSx SINE Alu -9 303 1 587 208 167 7 chr3 135155111 135155255 -92369323 + MER58B DNA MER1_type 175 341 0 24 0 0 0 chr3 135155996 135156020 -92368558 + AT_rich Low_complexity Low_complexity 1 24 0 235 306 47 12 chr3 135156429 135156514 -92368064 - L2 LINE L2 0 3313 3226 2463 71 0 0 chr3 135157182 135157479 -92367099 - AluY SINE Alu -14 297 1 210 245 108 39 chr3 135157875 135157977 -92366601 + MIR3 SINE MIR 78 186 -22 2465 66 0 0 chr3 135158303 135158604 -92365974 + AluY SINE Alu 1 301 -10 247 125 34 80 chr3 135159215 135159303 -92365275 + CT-rich Low_complexity Low_complexity 3 86 0 228 35 0 0 chr3 135159308 135159337 -92365241 + (CCCCG)n Simple_repeat Simple_repeat 1 29 0 240 361 57 8 chr3 135159459 135159581 -92364997 - L2 LINE L2 0 3272 3145 274 286 48 16 chr3 135160201 135160327 -92364251 + MIR SINE MIR 132 261 -1 1835 158 14 3 chr3 135161527 135161824 -92362754 - AluJo SINE Alu -12 300 1 197 340 20 30 chr3 135163626 135163726 -92360852 + MER5B DNA MER1_type 1 99 -79 243 0 0 0 chr3 135164136 135164163 -92360415 + (CA)n Simple_repeat Simple_repeat 2 28 0 663 240 11 28 chr3 135167640 135167819 -92356759 + MER5B DNA MER1_type 3 178 0 2275 97 7 3 chr3 135167837 135168136 -92356442 + AluSq SINE Alu 1 300 -13 824 194 33 4 chr3 135168138 135168309 -92356269 - MER3 DNA MER1_type -41 168 9 515 313 40 0 chr3 135168407 135168583 -92355995 - MIR SINE MIR -24 238 56 311 379 102 47 chr3 135169639 135169895 -92354683 - L2 LINE L2 -1 3271 3002 472 231 88 27 chr3 135169963 135170110 -92354468 + MLT1J LTR MaLR 20 175 -336 1586 91 0 0 chr3 135170294 135170503 -92354075 + THE1B-int LTR MaLR 1372 1580 0 2100 116 24 66 chr3 135170503 135170883 -92353695 + THE1B LTR MaLR 1 364 0 2229 103 13 3 chr3 135170910 135171212 -92353366 - AluSx SINE Alu -2 310 6 2360 128 46 44 chr3 135171237 135171650 -92352928 - MLT2D LTR ERVL 0 414 1 442 198 0 0 chr3 135171718 135171804 -92352774 + L1MA10 LINE L1 6249 6334 0 387 354 157 20 chr3 135172077 135172523 -92352055 - L3 LINE CR1 -137 1440 934 2500 61 0 3 chr3 135172693 135173003 -92351575 - AluY SINE Alu -2 309 1 1390 158 4 21 chr3 135174041 135174275 -92350303 - AluJo SINE Alu -82 230 1 180 0 0 0 chr3 135174296 135174316 -92350262 + (TA)n Simple_repeat Simple_repeat 1 20 0 458 319 96 22 chr3 135174896 135175125 -92349453 - MIR SINE MIR -10 252 7 303 319 43 0 chr3 135176494 135176610 -92347968 - MER110-int LTR ERV1 -4183 464 344 1195 137 0 0 chr3 135177746 135177921 -92346657 + AluSg/x SINE Alu 129 303 -9 269 287 53 0 chr3 135177926 135178020 -92346558 - Charlie2 DNA MER1_type -49 2813 2715 1273 239 43 60 chr3 135178038 135178456 -92346122 - Charlie2b DNA MER1_type -1774 1008 598 488 161 0 0 chr3 135178480 135178567 -92346011 - AluSg/x SINE Alu -8 304 218 238 303 121 18 chr3 135179292 135179457 -92345121 - L2 LINE L2 -845 2469 2288 237 311 152 18 chr3 135180444 135180608 -92343970 + MIR SINE MIR 10 195 -67 1592 179 29 4 chr3 135182354 135182634 -92341944 - AluJo SINE Alu -25 287 1 270 0 0 0 chr3 135182634 135182664 -92341914 + (TTTTG)n Simple_repeat Simple_repeat 3 32 0 1665 164 25 21 chr3 135182664 135182945 -92341633 - AluSx SINE Alu -30 282 1 625 213 38 38 chr3 135183014 135183249 -92341329 - AluJb SINE Alu -13 299 65 219 233 0 0 chr3 135184371 135184414 -92340164 + CT-rich Low_complexity Low_complexity 1 43 0 8027 74 8 25 chr3 135185061 135186271 -92338307 + L1P LINE L1 2810 3999 -2147 279 133 0 0 chr3 135187001 135187046 -92337532 + (GA)n Simple_repeat Simple_repeat 1 45 0 2123 123 0 0 chr3 135187971 135188286 -92336292 - AluSx SINE Alu 0 315 1 3454 181 48 18 chr3 135288811 135289694 -92234884 + L1MB8 LINE L1 5127 6038 -140 1147 50 0 0 chr3 135289696 135289837 -92234741 - AluY SINE Alu -1 310 170 556 234 41 0 chr3 135289837 135289982 -92234596 + L1MB7 LINE L1 6034 6184 0 373 299 22 15 chr3 135290000 135290216 -92234362 + L1ME LINE L1 1046 1301 -5071 573 295 107 15 chr3 135290294 135290687 -92233891 + L1ME LINE L1 1557 1985 -4578 207 167 0 0 chr3 135290747 135290789 -92233789 + (TATG)n Simple_repeat Simple_repeat 3 44 0 279 0 0 0 chr3 135291146 135291177 -92233401 + (CA)n Simple_repeat Simple_repeat 2 32 0 920 132 18 150 chr3 135293338 135293380 -92231198 - MER69 DNA AcHobo -12 2514 2468 195 114 0 0 chr3 135293380 135293415 -92231163 + (TTTTA)n Simple_repeat Simple_repeat 3 37 0 1767 167 3 7 chr3 135293420 135293708 -92230870 - AluSq SINE Alu -26 287 1 920 132 18 150 chr3 135293708 135293741 -92230837 - MER69 DNA AcHobo -62 2464 2428 1687 166 10 21 chr3 135293741 135293873 -92230705 + AluJo SINE Alu 1 133 -179 1863 157 19 22 chr3 135293873 135294186 -92230392 + AluJb SINE Alu 1 312 0 1687 166 10 21 chr3 135294186 135294343 -92230235 + AluJo SINE Alu 133 287 -25 920 132 18 150 chr3 135294343 135294533 -92230045 - MER69 DNA AcHobo -98 2428 2278 1580 204 36 8 chr3 135294544 135294901 -92229677 + MLT1D LTR MaLR 1 367 -138 2021 139 79 0 chr3 135295107 135295460 -92229118 - MSTB LTR MaLR 0 426 46 1218 141 0 0 chr3 135295461 135295645 -92228933 - AluSx SINE Alu 0 312 129 1190 58 0 0 chr3 135296596 135296733 -92227845 - AluSx SINE Alu -176 137 1 390 107 0 18 chr3 135296733 135296789 -92227789 - MSTB LTR MaLR -371 55 1 4141 168 62 2 chr3 135297643 135298435 -92226143 + L1MB2 LINE L1 5328 6166 -5 28 29 0 0 chr3 135298508 135298543 -92226035 + AT_rich Low_complexity Low_complexity 1 35 0 1269 159 53 20 chr3 135298731 135298976 -92225602 + THE1C LTR MaLR 1 253 -122 370 65 0 16 chr3 135299079 135299141 -92225437 + L1MA3 LINE L1 6245 6305 0 568 238 180 6 chr3 135301762 135301934 -92222644 + MIR SINE MIR 49 250 -12 570 312 54 11 chr3 135302033 135302219 -92222359 - MIR SINE MIR -24 238 45 2449 79 0 0 chr3 135302398 135302702 -92221876 + AluY SINE Alu 1 304 -7 2649 201 22 24 chr3 135302983 135303519 -92221059 + MLT1F LTR MaLR 1 535 -7 231 273 36 0 chr3 135304455 135304510 -92220068 + MER3 DNA MER1_type 34 90 -119 * 455 214 80 0 chr3 135304475 135304587 -92219991 - MER3 DNA MER1_type -8 201 81 2111 111 16 23 chr3 135304714 135305020 -92219558 - AluSx SINE Alu -8 304 1 230 215 168 65 chr3 135306255 135306362 -92218216 + L1ME LINE L1 5531 5648 -473 375 283 0 28 chr3 135307884 135307990 -92216588 + L3 LINE CR1 628 730 -847 774 226 12 24 chr3 135309259 135309427 -92215151 - MER58A DNA MER1_type -2 222 57 342 219 0 0 chr3 135310318 135310391 -92214187 - MER52A LTR ERV1 -1 1754 1682 * 5507 181 44 37 chr3 135310381 135311569 -92213009 - MER52A LTR ERV1 -559 1196 1 710 278 79 37 chr3 135311570 135311811 -92212767 + MIR SINE MIR 7 257 -5 584 320 6 23 chr3 135312237 135312412 -92212166 + MER5B DNA MER1_type 1 172 -6 348 269 46 62 chr3 135312633 135312763 -92211815 + L2 LINE L2 3140 3267 -5 31 26 0 0 chr3 135313095 135313133 -92211445 + AT_rich Low_complexity Low_complexity 1 38 0 419 238 25 126 chr3 135313656 135314064 -92210514 + L1MEc LINE L1 2144 2479 -3736 2414 222 59 99 chr3 135314254 135314974 -92209604 + L1MB4 LINE L1 3924 4580 -1566 1326 167 39 66 chr3 135314974 135315279 -92209299 + AluJo SINE Alu 1 297 -15 2414 222 59 99 chr3 135315279 135315754 -92208824 + L1MB4 LINE L1 4580 5072 -1074 199 281 53 0 chr3 135315954 135316011 -92208567 - MIR SINE MIR -111 151 92 3626 233 64 33 chr3 135316019 135316774 -92207804 + L1M4 LINE L1 1 732 -5914 393 117 0 0 chr3 135316774 135316834 -92207744 + (TA)n Simple_repeat Simple_repeat 2 61 0 2231 113 0 0 chr3 135316834 135317135 -92207443 - AluSx SINE Alu -11 301 1 3626 233 64 33 chr3 135317135 135318147 -92206431 + L1M4 LINE L1 731 1835 -4811 935 157 37 68 chr3 135318148 135318339 -92206239 + L1MB4 LINE L1 5441 5625 -555 1605 149 124 34 chr3 135318340 135318662 -92205916 - MLT1A1 LTR MaLR 0 365 15 1805 173 117 0 chr3 135318662 135319031 -92205547 + L1MB4 LINE L1 5622 6033 -147 23 54 0 0 chr3 135319964 135320001 -92204577 + AT_rich Low_complexity Low_complexity 1 37 0 297 75 0 0 chr3 135320400 135320440 -92204138 + (CA)n Simple_repeat Simple_repeat 1 40 0 1778 153 20 3 chr3 135322562 135322856 -92201722 + AluJb SINE Alu 1 299 -13 21 36 0 0 chr3 135322878 135322906 -92201672 + AT_rich Low_complexity Low_complexity 1 28 0 1740 170 0 26 chr3 135324314 135324620 -92199958 + AluJo SINE Alu 1 298 -14 780 173 8 8 chr3 135328020 135328147 -92196431 + MER58A DNA MER1_type 3 129 0 629 146 0 0 chr3 135328223 135328319 -92196259 + MER58A DNA MER1_type 129 224 0 53 30 0 0 chr3 135328983 135329050 -92195528 + GC_rich Low_complexity Low_complexity 1 67 0 44 123 0 0 chr3 135329092 135329157 -92195421 + GC_rich Low_complexity Low_complexity 1 65 0 1903 211 31 22 chr3 135329191 135329647 -92194931 - L1M4 LINE L1 -1035 5111 4652 514 126 0 23 chr3 135329730 135329817 -92194761 - BC200 scRNA scRNA -51 149 65 324 284 12 12 chr3 135330101 135330182 -92194396 + MIR SINE MIR 2 82 -180 1149 221 96 72 chr3 135330774 135331303 -92193275 - MLT1H1 LTR MaLR -2 553 15 186 315 19 19 chr3 135331956 135332010 -92192568 + L2 LINE L2 3258 3311 -2 941 165 6 6 chr3 135332046 135332204 -92192374 + MLT1A1 LTR MaLR 1 158 -207 1440 144 38 19 chr3 135332204 135332467 -92192111 + AluJb SINE Alu 1 268 -44 255 31 0 0 chr3 135332503 135332535 -92192043 + (GA)n Simple_repeat Simple_repeat 2 33 0 1255 182 14 18 chr3 135332540 135332760 -92191818 + MLT1A1 LTR MaLR 147 365 0 1777 122 7 14 chr3 135332915 135333202 -92191376 - AluSx SINE Alu -16 296 12 384 245 210 25 chr3 135333213 135333413 -92191165 - L1MEc LINE L1 -4014 2420 2176 616 333 88 71 chr3 135333415 135333704 -92190874 - L1MEc LINE L1 -5051 1365 1082 237 33 0 0 chr3 135333704 135333734 -92190844 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 616 333 88 71 chr3 135333734 135333874 -92190704 - L1MEc LINE L1 -5334 1082 946 1915 112 0 77 chr3 135333874 135334212 -92190366 + AluSx SINE Alu 1 312 0 616 333 88 71 chr3 135334212 135334474 -92190104 - L1MEc LINE L1 -5470 946 661 1523 209 0 3 chr3 135334750 135335051 -92189527 - AluJo SINE Alu -12 300 1 503 275 263 9 chr3 135336566 135336912 -92187666 - MLT1L LTR MaLR -7 608 175 348 339 99 26 chr3 135337106 135337339 -92187239 + MIR SINE MIR 2 251 -11 27 0 0 0 chr3 135338822 135338849 -92185729 + GC_rich Low_complexity Low_complexity 1 27 0 649 304 74 9 chr3 135339678 135339895 -92184683 - MIR SINE MIR -12 250 20 306 304 104 0 chr3 135340370 135340495 -92184083 - MIR SINE MIR -102 160 23 492 184 319 7 chr3 135340526 135340667 -92183911 + MER5A DNA MER1_type 5 189 0 341 280 112 8 chr3 135342510 135342635 -92181943 - MIR SINE MIR -17 191 53 225 357 31 10 chr3 135344640 135344738 -92179840 - MIR SINE MIR -151 111 12 1607 174 7 16 chr3 135345299 135345604 -92178974 + AluJo SINE Alu 1 302 -10 215 263 199 39 chr3 135346604 135346760 -92177818 - L2 LINE L2 -3 3310 3130 2070 102 0 0 chr3 135347474 135347767 -92176811 + AluY SINE Alu 3 295 -16 189 0 0 0 chr3 135348580 135348601 -92175977 + (T)n Simple_repeat Simple_repeat 1 21 0 2011 107 38 0 chr3 135349113 135349403 -92175175 + AluSx SINE Alu 1 301 -11 915 168 0 0 chr3 135349945 135350088 -92174490 + MER52A LTR ERV1 1031 1173 -582 * 1902 146 44 38 chr3 135350085 135350427 -92174151 + THE1B LTR MaLR 21 364 0 490 216 196 7 chr3 135350633 135350781 -92173797 - MER5A DNA MER1_type -1 188 13 1728 173 3 3 chr3 135350962 135351269 -92173309 + AluJb SINE Alu 1 307 -5 1529 175 3 18 chr3 135351282 135351568 -92173010 + AluJo SINE Alu 1 282 -30 26 0 0 0 chr3 135351574 135351600 -92172978 + AT_rich Low_complexity Low_complexity 1 26 0 303 275 38 0 chr3 135351832 135351912 -92172666 + L1MCa LINE L1 1986 2068 -4358 * 304 224 24 47 chr3 135351868 135351953 -92172625 - L1MCa LINE L1 -4349 2077 1995 497 16 16 0 chr3 135351980 135352042 -92172536 + (CA)n Simple_repeat Simple_repeat 2 64 0 231 228 119 0 chr3 135352321 135352398 -92172180 - MIR SINE MIR -110 152 65 1914 142 7 0 chr3 135352398 135352694 -92171884 - AluSx SINE Alu -14 298 1 248 322 53 23 chr3 135353659 135353830 -92170748 + L1M4 LINE L1 3915 4090 -2056 * 1078 292 161 21 chr3 135353829 135354442 -92170136 + L1MC4a LINE L1 6 704 -5415 286 240 0 0 chr3 135354492 135354542 -92170036 - MER91B DNA MER1_type -127 63 14 341 352 32 0 chr3 135354555 135354805 -92169773 + L1MC4a LINE L1 4069 4326 -1803 362 343 88 0 chr3 135354827 135355008 -92169570 + L1MC4a LINE L1 4739 4935 -1194 829 279 103 46 chr3 135355059 135355836 -92168742 + L1MC4a LINE L1 5045 5758 -395 1949 105 11 11 chr3 135355946 135356232 -92168346 - L1P LINE L1 -3449 2697 2412 1212 52 0 0 chr3 135356232 135356368 -92168210 - AluSq/x SINE Alu -175 137 2 2277 96 3 0 chr3 135356615 135356908 -92167670 + AluSx SINE Alu 1 294 -18 231 250 6 25 chr3 135357123 135357203 -92167375 + AluSq/x SINE Alu 54 113 -189 22 70 0 0 chr3 135357381 135357424 -92167154 + AT_rich Low_complexity Low_complexity 1 43 0 2371 100 3 0 chr3 135359306 135359605 -92164973 + AluSp SINE Alu 1 300 -13 216 0 0 0 chr3 135361540 135361564 -92163014 + (TA)n Simple_repeat Simple_repeat 1 24 0 2651 33 3 0 chr3 135362762 135363069 -92161509 - AluY SINE Alu -3 308 1 2407 115 8 8 chr3 135363290 135363681 -92160897 + Tigger1 DNA MER2_type 1131 1521 -897 753 235 24 0 chr3 135363692 135363862 -92160716 - L1ME LINE L1 -417 5753 5580 213 369 39 0 chr3 135364313 135364416 -92160162 + MIR SINE MIR 22 128 -134 204 182 0 0 chr3 135364626 135364670 -92159908 + (TA)n Simple_repeat Simple_repeat 2 45 0 1087 251 23 7 chr3 135364689 135364996 -92159582 + Zaphod DNA AcHobo 3720 4031 0 2686 128 69 70 chr3 135365147 135365787 -92158791 - L1MA8 LINE L1 -6 6285 5647 1062 170 5 0 chr3 135366114 135366320 -92158258 - L1MB7 LINE L1 -23 6161 5955 1993 148 0 10 chr3 135366325 135366630 -92157948 - AluSx SINE Alu -10 302 1 974 278 50 6 chr3 135366688 135367288 -92157290 - L1MEc LINE L1 -3597 2618 2030 735 269 56 54 chr3 135367503 135367946 -92156632 - L1MEc LINE L1 -4641 1755 1312 900 214 43 89 chr3 135368277 135368697 -92155881 - MLT1B LTR MaLR 0 379 6 2015 281 49 3 chr3 135368703 135369272 -92155306 - MLT1B-int LTR MaLR 0 1735 1141 1973 199 5 0 chr3 135369482 135369874 -92154704 - MLT1B-int LTR MaLR -710 661 268 621 146 146 0 chr3 135369845 135369982 -92154596 - MLT1B-int LTR MaLR -1574 161 5 * 585 149 0 0 chr3 135369990 135370084 -92154494 - MLT1B LTR MaLR -4 386 293 1291 129 0 0 chr3 135370125 135370326 -92154252 + L1PB1 LINE L1 5950 6150 -1 472 363 96 11 chr3 135370327 135370597 -92153981 - L1MEc LINE L1 -5306 899 607 24 53 0 0 chr3 135370917 135370955 -92153623 + AT_rich Low_complexity Low_complexity 1 38 0 223 342 67 42 chr3 135371682 135371802 -92152776 - MIR3 SINE MIR -83 125 3 664 240 97 0 chr3 135373645 135373820 -92150758 - MIR SINE MIR -2 260 69 1812 168 7 7 chr3 135374453 135374750 -92149828 - AluJb SINE Alu -15 297 1 641 250 68 40 chr3 135375027 135375279 -92149299 + L1MC/D LINE L1 5539 5797 -2011 26 0 0 0 chr3 135375789 135375815 -92148763 + AT_rich Low_complexity Low_complexity 1 26 0 926 293 127 8 chr3 135377227 135377589 -92146989 + MLT1J LTR MaLR 1 405 -106 249 347 28 28 chr3 135377944 135378088 -92146490 + L2 LINE L2 3163 3306 -7 213 319 92 50 chr3 135378222 135378341 -92146237 - L2 LINE L2 -11 3302 3179 543 293 94 23 chr3 135379175 135379441 -92145137 + L2 LINE L2 2230 2514 -800 201 351 0 0 chr3 135379443 135379517 -92145061 + L2 LINE L2 2632 2705 -609 311 269 0 39 chr3 135379595 135379699 -92144879 + L2 LINE L2 3196 3295 -18 2144 85 64 0 chr3 135380572 135380855 -92143723 + AluSx SINE Alu 1 301 -11 1760 144 12 0 chr3 135382864 135383114 -92141464 + AluSx SINE Alu 27 279 -33 360 0 0 0 chr3 135383114 135383154 -92141424 + (CA)n Simple_repeat Simple_repeat 1 40 0 224 276 167 32 chr3 135384079 135384235 -92140343 + MIR SINE MIR 86 262 0 185 305 34 68 chr3 135384786 135384904 -92139674 - L2 LINE L2 -11 3302 3189 1721 149 4 8 chr3 135385341 135385602 -92138976 + AluSx SINE Alu 1 260 -52 598 130 0 0 chr3 135385703 135385795 -92138783 + AluSg/x SINE Alu 219 310 0 655 171 9 0 chr3 135386809 135386920 -92137658 - L1PB4 LINE L1 -7 6149 6038 1513 90 9 24 chr3 135387076 135387287 -92137291 + AluSp SINE Alu 83 290 -23 572 309 76 22 chr3 135387429 135387930 -92136648 + L1M4 LINE L1 3490 4017 -2129 1013 193 0 0 chr3 135388146 135388333 -92136245 + MER5A DNA MER1_type 1 187 -2 182 152 0 0 chr3 135390829 135390862 -92133716 + L2 LINE L2 3239 3271 -1 1306 178 104 17 chr3 135391179 135391584 -92132994 + MER106B DNA MER1_type 289 728 -331 1681 157 41 27 chr3 135391586 135391880 -92132698 - AluJo SINE Alu -14 298 1 810 194 22 35 chr3 135391900 135392127 -92132451 + MER106B DNA MER1_type 833 1056 -3 441 0 0 0 chr3 135392184 135392233 -92132345 + (CA)n Simple_repeat Simple_repeat 1 49 0 255 175 0 0 chr3 135393024 135393064 -92131514 + L2 LINE L2 3262 3301 -12 2133 137 10 0 chr3 135393163 135393470 -92131108 - AluSx SINE Alu -2 310 1 184 299 28 89 chr3 135393569 135393783 -92130795 + L2 LINE L2 2539 2739 -575 266 263 116 76 chr3 135393803 135394027 -92130551 - L2 LINE L2 0 3313 3081 458 269 9 9 chr3 135394311 135394419 -92130159 + MIR SINE MIR 118 225 -37 713 189 80 11 chr3 135394558 135394733 -92129845 - MER5A DNA MER1_type 0 189 3 270 159 0 0 chr3 135394735 135394779 -92129799 + MIR SINE MIR 209 252 -10 399 41 0 0 chr3 135394930 135394979 -92129599 + (CAT)n Simple_repeat Simple_repeat 2 50 0 187 388 62 0 chr3 135395129 135395209 -92129369 + L2 LINE L2 2981 3065 -207 288 336 50 25 chr3 135395359 135395478 -92129100 + L2 LINE L2 3142 3263 -9 1947 153 0 10 chr3 135397205 135397499 -92127079 - AluJb SINE Alu -10 302 12 22 35 0 0 chr3 135397875 135397904 -92126674 + AT_rich Low_complexity Low_complexity 1 29 0 205 320 80 60 chr3 135398139 135398185 -92126393 + L3 LINE CR1 1333 1377 -200 2287 72 3 36 chr3 135398185 135398492 -92126086 - AluY SINE Alu -14 297 1 205 320 80 60 chr3 135398492 135398595 -92125983 + L3 LINE CR1 1377 1485 -92 207 78 59 0 chr3 135398887 135398938 -92125640 + (TA)n Simple_repeat Simple_repeat 1 54 0 252 0 0 0 chr3 135398970 135398998 -92125580 + (TA)n Simple_repeat Simple_repeat 2 29 0 1972 138 13 3 chr3 135399032 135399330 -92125248 + AluSx SINE Alu 1 301 -11 7454 126 24 12 chr3 135400126 135401532 -92123046 - L1P LINE L1 -1994 4152 2723 963 207 152 13 chr3 135401532 135401913 -92122665 - L1MCa LINE L1 -4224 2202 1769 2118 146 2 54 chr3 135401939 135402148 -92122430 - L1MB7 LINE L1 -25 6159 5982 2354 72 0 16 chr3 135402148 135402454 -92122124 - AluY SINE Alu -10 301 1 2118 146 2 54 chr3 135402454 135402669 -92121909 - L1MB7 LINE L1 -202 5982 5757 299 215 107 74 chr3 135402805 135402926 -92121652 - L1ME3 LINE L1 -77 6085 5961 321 263 51 6 chr3 135402992 135403148 -92121430 - L1ME3 LINE L1 -208 5962 5800 2512 165 62 81 chr3 135403154 135403868 -92120710 - Cheshire DNA MER1_type -8 2412 1713 22 88 0 0 chr3 135404015 135404072 -92120506 + GC_rich Low_complexity Low_complexity 1 57 0 3884 209 37 8 chr3 135404227 135405232 -92119346 + L1 LINE L1 2464 3497 -2649 22 0 0 0 chr3 135405392 135405414 -92119164 + GC_rich Low_complexity Low_complexity 1 22 0 1275 154 27 35 chr3 135405795 135406055 -92118523 + AluSx SINE Alu 39 296 -16 200 208 21 0 chr3 135408332 135408380 -92116198 + (CATA)n Simple_repeat Simple_repeat 3 51 0 472 42 14 0 chr3 135408387 135408458 -92116120 - MER2 DNA MER2_type -146 199 128 813 141 15 0 chr3 135408459 135408594 -92115984 + AluSg/x SINE Alu 176 312 0 758 191 8 0 chr3 135408594 135408725 -92115853 - MER2 DNA MER2_type -213 132 1 799 174 56 46 chr3 135409779 135409975 -92114603 + L1MB5 LINE L1 5977 6174 0 283 205 94 77 chr3 135410077 135410194 -92114384 + MER94 DNA DNA 12 130 -4 1196 110 6 0 chr3 135410895 135411081 -92113497 - AluSp SINE Alu 0 307 121 7051 59 29 7 chr3 135411095 135412819 -92111759 - L1PA7 LINE L1 -1 6153 4412 23 0 0 0 chr3 135413796 135413819 -92110759 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr3 135415238 135415267 -92109311 + AT_rich Low_complexity Low_complexity 1 29 0 288 0 0 0 chr3 135415320 135415352 -92109226 + (TA)n Simple_repeat Simple_repeat 2 33 0 2547 50 7 0 chr3 135415352 135415653 -92108925 - AluY SINE Alu -8 303 1 21 36 0 0 chr3 135417669 135417697 -92106881 + AT_rich Low_complexity Low_complexity 1 28 0 226 130 19 19 chr3 135417935 135417989 -92106589 + A-rich Low_complexity Low_complexity 2 55 0 214 140 20 20 chr3 135418001 135418051 -92106527 + GA-rich Low_complexity Low_complexity 3 52 0 1576 98 0 0 chr3 135418933 135419136 -92105442 + AluSg/x SINE Alu 106 308 -2 914 191 104 11 chr3 135419532 135419715 -92104863 - MER6B DNA MER2_type 0 210 11 216 369 81 27 chr3 135420197 135420308 -92104270 + L2 LINE L2 3154 3270 -2 24 19 5 0 chr3 135421929 135421987 -92102591 + GC_rich Low_complexity Low_complexity 1 31 0 834 227 93 2 chr3 135422124 135422359 -92102219 - L1ME LINE L1 -445 5953 5699 1610 250 67 13 chr3 135422368 135422979 -92101599 - L1ME LINE L1 -3873 2690 2047 4743 60 26 9 chr3 135422979 135424093 -92100485 - MER11A LTR ERVK 0 1266 1 812 264 121 40 chr3 135424093 135424894 -92099684 - L1ME LINE L1 -4511 2052 1015 409 162 68 68 chr3 135424900 135425017 -92099561 - L1ME LINE L1 -5452 1111 995 5710 167 37 18 chr3 135425312 135427038 -92097540 - L1PA16 LINE L1 -4 6162 4389 405 0 0 0 chr3 135427038 135427083 -92097495 + (TTTTA)n Simple_repeat Simple_repeat 3 47 0 5710 167 37 18 chr3 135427083 135427454 -92097124 - L1PA16 LINE L1 -1777 4389 4027 331 290 181 16 chr3 135427728 135427921 -92096657 + MIR SINE MIR 35 259 -3 208 330 161 0 chr3 135428570 135428688 -92095890 + MIR3 SINE MIR 45 181 -27 543 157 87 17 chr3 135428742 135428857 -92095721 + MER58B DNA MER1_type 219 341 0 255 238 70 116 chr3 135429776 135429948 -92094630 + L1MC4 LINE L1 7864 8027 -15 2344 117 5 37 chr3 135430244 135430620 -92093958 - THE1B LTR MaLR 0 364 1 575 247 95 22 chr3 135431086 135431317 -92093261 - L1ME3A LINE L1 -220 5950 5703 6088 116 46 27 chr3 135431871 135432860 -92091718 + L1MA3 LINE L1 5141 6165 -140 2189 105 0 3 chr3 135432860 135433154 -92091424 + AluY SINE Alu 1 293 -18 6088 116 46 27 chr3 135433154 135433292 -92091286 + L1MA3 LINE L1 6165 6299 -6 2766 208 92 11 chr3 135433302 135434216 -92090362 - L1ME1 LINE L1 -31 6135 5142 188 291 175 29 chr3 135434630 135434733 -92089845 + L2 LINE L2 3196 3313 0 1098 169 163 20 chr3 135434777 135435078 -92089500 - MER2 DNA MER2_type 0 344 1 1979 199 31 5 chr3 135435311 135435697 -92088881 - MSTD LTR MaLR 0 396 1 376 333 10 0 chr3 135436688 135436787 -92087791 - MIR3 SINE MIR -54 154 55 441 0 0 0 chr3 135436791 135436840 -92087738 + (TG)n Simple_repeat Simple_repeat 2 50 0 238 267 103 0 chr3 135437538 135437654 -92086924 + L1ME4a LINE L1 5980 6107 -14 22 0 0 0 chr3 135437785 135437807 -92086771 + AT_rich Low_complexity Low_complexity 1 22 0 1460 139 51 24 chr3 135437837 135438132 -92086446 + MER44D DNA MER2_type 37 609 0 1781 186 0 0 chr3 135439712 135439997 -92084581 - MER44D DNA MER2_type -420 285 1 370 278 0 0 chr3 135440009 135440106 -92084472 + MIR SINE MIR 147 243 -19 2143 94 0 0 chr3 135440443 135440747 -92083831 + AluY SINE Alu 5 308 0 243 179 54 18 chr3 135441094 135441150 -92083428 - Tigger7 DNA MER2_type -342 2145 2088 * 262 32 0 0 chr3 135441148 135441179 -92083399 - MSTC LTR MaLR -68 360 330 2883 3 0 0 chr3 135441263 135441572 -92083006 + AluYa5 SINE Alu 1 309 -2 2337 90 0 34 chr3 135442347 135442670 -92081908 - AluSx SINE Alu 0 312 1 188 143 0 0 chr3 135443052 135443080 -92081498 + L2 LINE L2 3231 3258 -14 13940 124 48 24 chr3 135444649 135447008 -92077570 + Tigger1 DNA MER2_type 3 2418 0 313 306 119 6 chr3 135447613 135447773 -92076805 + MIR3 SINE MIR 17 194 -14 6571 40 1 0 chr3 135447920 135448712 -92075866 - L1PA5 LINE L1 -9 6145 5353 18428 62 6 0 chr3 135448712 135451149 -92073429 + L1PA5 LINE L1 2882 5331 -815 1521 126 9 9 chr3 135451251 135451481 -92073097 + AluSq SINE Alu 1 230 -83 490 242 0 10 chr3 135451966 135452065 -92072513 + Tigger3(Golem) DNA MER2_type 2932 3029 0 3823 7 0 0 chr3 135452293 135452723 -92071855 + L1HS LINE L1 5726 6155 0 180 77 0 0 chr3 135452849 135452875 -92071703 + (T)n Simple_repeat Simple_repeat 1 26 0 477 305 50 7 chr3 135453748 135453889 -92070689 + MIR3 SINE MIR 31 177 -31 565 221 25 8 chr3 135454936 135455058 -92069520 + MER94 DNA DNA 1 124 -10 181 336 84 49 chr3 135455840 135455983 -92068595 - MIR3 SINE MIR -8 200 53 328 274 10 49 chr3 135456120 135456222 -92068356 + L2 LINE L2 3189 3286 -27 262 183 14 14 chr3 135456326 135456397 -92068181 + (TTTAA)n Simple_repeat Simple_repeat 1 71 0 21 57 0 0 chr3 135456547 135456582 -92067996 + AT_rich Low_complexity Low_complexity 1 35 0 554 313 106 9 chr3 135456735 135456962 -92067616 - L3 LINE CR1 -8 1569 1321 1450 160 83 44 chr3 135457318 135457656 -92066922 - MER58D DNA MER1_type 0 386 36 1660 179 4 0 chr3 135458571 135458850 -92065728 + AluJb SINE Alu 1 280 -32 24 0 0 0 chr3 135458862 135458886 -92065692 + AT_rich Low_complexity Low_complexity 1 24 0 1869 163 14 0 chr3 135458889 135459178 -92065400 + AluSx SINE Alu 1 293 -19 202 189 0 0 chr3 135459209 135459246 -92065332 + CT-rich Low_complexity Low_complexity 2 38 0 27 62 0 0 chr3 135460708 135460756 -92063822 + AT_rich Low_complexity Low_complexity 1 48 0 27 0 0 0 chr3 135461177 135461204 -92063374 + AT_rich Low_complexity Low_complexity 1 27 0 23 78 0 0 chr3 135461402 135461453 -92063125 + AT_rich Low_complexity Low_complexity 1 51 0 431 309 0 0 chr3 135462081 135462204 -92062374 - MIR SINE MIR -1 261 139 4132 157 38 1 chr3 135462214 135462894 -92061684 + MER44D DNA MER2_type 1 705 0 1827 183 16 16 chr3 135463248 135463614 -92060964 + MER47A DNA MER2_type 1 366 0 514 121 0 11 chr3 135463761 135463852 -92060726 - AluS SINE Alu 0 310 221 1629 182 16 10 chr3 135465398 135465438 -92059140 + L1MB7 LINE L1 4679 4717 -1429 2014 138 0 13 chr3 135465438 135465742 -92058836 - AluJb SINE Alu -12 300 1 1629 182 16 10 chr3 135465742 135466008 -92058570 + L1MB7 LINE L1 4717 4987 -1159 2994 170 37 15 chr3 135466015 135466666 -92057912 + L1MA7 LINE L1 5509 6283 -8 1178 188 63 8 chr3 135466674 135467705 -92056873 + L1MB7 LINE L1 4982 6179 -5 1705 167 35 3 chr3 135468279 135468561 -92056017 + AluSx SINE Alu 2 292 -20 228 339 33 25 chr3 135469068 135469189 -92055389 - L2 LINE L2 -188 3084 2963 198 216 59 0 chr3 135469341 135469392 -92055186 - L2 LINE L2 -559 2755 2702 1606 158 91 109 chr3 135469814 135470326 -92054252 - L1MC2 LINE L1 -92 7693 6171 251 262 36 36 chr3 135470329 135470413 -92054165 - MLT1F1 LTR MaLR -434 133 50 676 219 203 0 chr3 135470414 135470606 -92053972 - L1MC3 LINE L1 -669 7116 6886 2111 112 0 0 chr3 135470643 135470929 -92053649 - AluSx SINE Alu -25 287 2 246 191 48 119 chr3 135470929 135471013 -92053565 - L1MC3 LINE L1 -884 6901 6824 265 262 91 27 chr3 135471260 135471447 -92053131 - L1MC3 LINE L1 -2319 5489 5291 1562 143 53 8 chr3 135471452 135471697 -92052881 - AluSq SINE Alu -57 256 1 23 33 0 0 chr3 135471990 135472020 -92052558 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr3 135472857 135472885 -92051693 + AT_rich Low_complexity Low_complexity 1 28 0 1960 144 10 0 chr3 135472885 135473191 -92051387 - AluSx SINE Alu -3 309 1 603 337 84 36 chr3 135473604 135474022 -92050556 - L3 LINE CR1 -439 1138 701 291 206 130 54 chr3 135474255 135474347 -92050231 - L3 LINE CR1 -916 661 563 30 0 0 0 chr3 135474351 135474381 -92050197 + AT_rich Low_complexity Low_complexity 1 30 0 441 95 0 0 chr3 135474381 135474444 -92050134 + (TG)n Simple_repeat Simple_repeat 2 64 0 1552 167 7 51 chr3 135474446 135474605 -92049973 - AluJb SINE Alu -30 282 140 2317 81 10 0 chr3 135474605 135474903 -92049675 - AluSp SINE Alu -12 301 1 1552 167 7 51 chr3 135474903 135475036 -92049542 - AluJb SINE Alu -172 140 3 666 301 39 39 chr3 135475562 135475821 -92048757 - MIR SINE MIR -3 259 1 2495 77 0 0 chr3 135475889 135476200 -92048378 - AluY SINE Alu 0 311 1 23 0 0 0 chr3 135477690 135477713 -92046865 + AT_rich Low_complexity Low_complexity 1 23 0 797 231 0 0 chr3 135477947 135478103 -92046475 - MIR SINE MIR -25 237 82 1798 128 14 11 chr3 135478219 135478500 -92046078 + AluSx SINE Alu 1 282 -30 188 33 0 33 chr3 135478507 135478537 -92046041 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 185 266 139 13 chr3 135478671 135478750 -92045828 - MIR SINE MIR -64 198 110 261 83 0 0 chr3 135479547 135479583 -92044995 + (A)n Simple_repeat Simple_repeat 1 36 0 1123 271 123 71 chr3 135479721 135479878 -92044700 + L1MC4a LINE L1 5673 5820 -1988 180 0 0 0 chr3 135479878 135479898 -92044680 + (CA)n Simple_repeat Simple_repeat 2 21 0 1123 271 123 71 chr3 135479898 135480281 -92044297 + L1MC4a LINE L1 5820 6182 -1626 1860 154 3 14 chr3 135480281 135480573 -92044005 - AluSx SINE Alu -23 289 1 1123 271 123 71 chr3 135480573 135481133 -92043445 + L1MC4a LINE L1 6182 6831 -977 1847 214 80 30 chr3 135481183 135481881 -92042697 + L1MC5 LINE L1 6971 7703 -258 1918 132 4 0 chr3 135481886 135482158 -92042420 + AluSx SINE Alu 1 273 -39 198 0 0 0 chr3 135482159 135482181 -92042397 + (GGAA)n Simple_repeat Simple_repeat 2 23 0 * 242 71 0 24 chr3 135482180 135482222 -92042356 + (TAGG)n Simple_repeat Simple_repeat 2 42 0 8959 116 98 33 chr3 135482881 135484499 -92040079 + Tigger1 DNA MER2_type 695 2418 0 1704 156 30 7 chr3 135485470 135485771 -92038807 + AluJb SINE Alu 1 308 -4 629 176 91 91 chr3 135485902 135486089 -92038489 - Charlie1a DNA MER1_type -1267 188 2 1981 199 60 63 chr3 135487669 135488272 -92036306 + L1M4 LINE L1 3570 4170 -1976 280 118 29 0 chr3 135488279 135488347 -92036231 + (TA)n Simple_repeat Simple_repeat 1 70 0 2270 102 0 3 chr3 135488347 135488640 -92035938 - AluSx SINE Alu -20 292 1 1927 234 43 26 chr3 135488655 135489159 -92035419 + L1M4 LINE L1 2405 2924 -3222 1872 173 129 16 chr3 135489159 135489547 -92035031 + MSTB1 LTR MaLR 1 432 0 1927 234 43 26 chr3 135489547 135489688 -92034890 + L1M4 LINE L1 2924 3061 -3085 930 134 0 20 chr3 135489830 135489979 -92034599 - AluJo SINE Alu -166 146 1 336 345 0 8 chr3 135489993 135490112 -92034466 - L2 LINE L2 -2084 1230 1113 849 208 0 0 chr3 135490132 135490281 -92034297 - MER58A DNA MER1_type -38 186 38 344 181 11 32 chr3 135490317 135490411 -92034167 - L2 LINE L2 -2271 1043 952 470 273 104 13 chr3 135491031 135491185 -92033393 - MIR3 SINE MIR -32 176 9 207 0 0 0 chr3 135492483 135492506 -92032072 + (TAA)n Simple_repeat Simple_repeat 1 23 0 382 75 27 68 chr3 135492554 135492701 -92031877 + (TA)n Simple_repeat Simple_repeat 2 142 0 264 59 0 0 chr3 135492738 135492772 -92031806 + (TTCC)n Simple_repeat Simple_repeat 3 36 0 974 79 0 0 chr3 135492884 135493011 -92031567 + (C)n Simple_repeat Simple_repeat 1 127 0 219 174 52 52 chr3 135493012 135493167 -92031411 + (CCGCG)n Simple_repeat Simple_repeat 5 159 0 225 218 91 0 chr3 135496424 135496479 -92028099 + L1MC4 LINE L1 6644 6703 -1339 * 333 259 118 38 chr3 135496470 135496849 -92027729 - L1ME4a LINE L1 -157 5964 5541 1096 237 58 61 chr3 135497977 135498123 -92026455 - L1ME2 LINE L1 -8 6156 6011 304 173 370 0 chr3 135498123 135498204 -92026374 + MER81 DNA DNA 3 113 -1 1096 237 58 61 chr3 135498204 135498403 -92026175 - L1ME2 LINE L1 -153 6011 5812 23 0 0 0 chr3 135501122 135501145 -92023433 + AT_rich Low_complexity Low_complexity 1 23 0 231 236 28 0 chr3 135501389 135501461 -92023117 - L1ME4a LINE L1 -1751 4395 4322 1747 251 16 37 chr3 135501534 135502108 -92022470 - L1ME4a LINE L1 -2192 3954 3393 25 0 0 0 chr3 135502328 135502353 -92022225 + AT_rich Low_complexity Low_complexity 1 25 0 289 244 115 46 chr3 135503360 135503577 -92021001 + L1M4 LINE L1 4338 4569 -1577 923 260 69 48 chr3 135504001 135504378 -92020200 + L2 LINE L2 2928 3312 -1 397 91 91 0 chr3 135504419 135504507 -92020071 + L1MA9 LINE L1 6217 6312 0 1346 181 146 16 chr3 135505396 135505705 -92018873 - MER47A DNA MER2_type -13 353 5 470 152 9 38 chr3 135505709 135505800 -92018778 - L1 LINE L1 -2138 4008 3919 2272 116 3 0 chr3 135505800 135506111 -92018467 - AluSx SINE Alu 0 312 1 470 152 9 38 chr3 135506111 135506124 -92018454 - L1 LINE L1 -2227 3919 3907 504 276 94 68 chr3 135506526 135506834 -92017744 - L2 LINE L2 -21 3292 2977 2854 179 45 68 chr3 135506834 135507543 -92017035 - L1MD2 LINE L1 -45 6314 5622 1763 244 88 15 chr3 135507543 135507604 -92016974 - L2 LINE L2 -769 2545 2490 2109 92 0 110 chr3 135507604 135507950 -92016628 + AluSx SINE Alu 1 308 -4 1763 244 88 15 chr3 135507950 135508412 -92016166 - L2 LINE L2 -824 2490 1984 1659 176 4 7 chr3 135508779 135509052 -92015526 - AluJo SINE Alu -30 282 11 189 0 0 0 chr3 135509053 135509074 -92015504 + (CCCA)n Simple_repeat Simple_repeat 3 23 0 1601 178 39 60 chr3 135509123 135509506 -92015072 - THE1C LTR MaLR 0 375 1 433 268 154 36 chr3 135509632 135509852 -92014726 + MIR SINE MIR 10 255 -7 23 33 0 0 chr3 135510215 135510245 -92014333 + AT_rich Low_complexity Low_complexity 1 30 0 254 215 31 0 chr3 135510417 135510482 -92014096 + MER58A DNA MER1_type 39 105 -2 314 200 31 0 chr3 135510491 135510556 -92014022 + MER58A DNA MER1_type 77 143 0 241 259 0 0 chr3 135510556 135510609 -92013969 + MER58A DNA MER1_type 172 224 0 1235 185 40 4 chr3 135510853 135511080 -92013498 + MER46A DNA MER2_type 2 236 0 191 286 19 67 chr3 135511155 135511260 -92013318 + L2 LINE L2 2290 2389 -925 2237 109 3 0 chr3 135511504 135511815 -92012763 + AluSx SINE Alu 1 312 0 458 76 38 0 chr3 135512094 135512173 -92012405 + L1MA4A LINE L1 6217 6298 -5 274 225 144 18 chr3 135512957 135513068 -92011510 + MER112 DNA MER1_type 9 133 -127 1029 68 12 12 chr3 135513073 135513234 -92011344 + (CTATT)n Simple_repeat Simple_repeat 2 162 0 1324 267 79 53 chr3 135513928 135514939 -92009639 - L1M4b LINE L1 -3954 3184 1937 2476 83 0 0 chr3 135514939 135515251 -92009327 - AluSx SINE Alu 0 312 1 1324 267 79 53 chr3 135515251 135515879 -92008699 - L1M4b LINE L1 -5201 1937 1326 1963 129 7 0 chr3 135515880 135516167 -92008411 - AluSx SINE Alu -23 289 1 312 316 53 27 chr3 135516589 135516814 -92007764 - L1M4b LINE L1 -6612 247 17 249 344 80 0 chr3 135516857 135516982 -92007596 + L2 LINE L2 1813 1947 -1367 * 430 337 82 5 chr3 135516979 135517163 -92007415 + L2 LINE L2 2873 3070 -243 499 288 174 58 chr3 135517222 135517635 -92006943 + L2 LINE L2 1938 2398 -916 651 108 69 0 chr3 135517642 135517744 -92006834 - AluSg/x SINE Alu -9 303 195 741 330 19 49 chr3 135517744 135518152 -92006426 + L2 LINE L2 2688 3080 -233 2287 81 0 11 chr3 135518455 135518764 -92005814 + AluSq SINE Alu 1 306 0 213 121 0 0 chr3 135519551 135519584 -92004994 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 817 207 117 77 chr3 135519694 135519994 -92004584 - MER5C DNA MER1_type -9 315 4 180 0 0 0 chr3 135521580 135521600 -92002978 + (TTG)n Simple_repeat Simple_repeat 2 21 0 300 238 16 0 chr3 135521737 135521800 -92002778 - MIR SINE MIR -21 241 178 213 328 37 8 chr3 135522701 135522835 -92001743 - L2 LINE L2 -978 2336 2199 440 353 0 0 chr3 135522947 135523066 -92001512 - L2 LINE L2 -2899 415 297 259 333 0 12 chr3 135523109 135523190 -92001388 - L2 LINE L2 -2938 376 297 255 181 24 12 chr3 135523622 135523705 -92000873 + CT-rich Low_complexity Low_complexity 2 85 0 2082 100 62 3 chr3 135524875 135525166 -91999412 + AluSq SINE Alu 1 308 -5 320 282 43 53 chr3 135525345 135525533 -91999045 + MER117 DNA MER1_type 1 186 -11 504 308 136 23 chr3 135525544 135525765 -91998813 + MIR SINE MIR 17 262 0 580 277 91 16 chr3 135525785 135526027 -91998551 - MIR SINE MIR -2 260 1 235 190 0 35 chr3 135526118 135526139 -91998439 + (TAG)n Simple_repeat Simple_repeat 1 21 -35 2272 103 0 7 chr3 135526139 135526441 -91998137 + AluSq SINE Alu 2 301 -12 235 190 0 35 chr3 135526441 135526477 -91998101 + (TAG)n Simple_repeat Simple_repeat 21 56 0 422 220 50 0 chr3 135526482 135526582 -91997996 - MIR SINE MIR 0 262 158 23 0 0 0 chr3 135526820 135526843 -91997735 + AT_rich Low_complexity Low_complexity 1 23 0 252 250 188 0 chr3 135527181 135527245 -91997333 + MIR SINE MIR 76 151 -111 229 209 45 0 chr3 135527245 135527312 -91997266 + (TA)n Simple_repeat Simple_repeat 1 70 0 309 26 0 0 chr3 135527322 135527360 -91997218 + (CA)n Simple_repeat Simple_repeat 2 39 0 309 355 114 19 chr3 135527404 135527666 -91996912 + L2 LINE L2 2075 2361 -953 1604 108 44 44 chr3 135528105 135528401 -91996177 + Tigger7 DNA MER2_type 2292 2587 0 3096 180 26 29 chr3 135528401 135528811 -91995767 + L1MC2 LINE L1 4912 5321 -1023 1454 164 62 78 chr3 135528811 135529182 -91995396 + MLT1A1 LTR MaLR 1 365 0 3096 180 26 29 chr3 135529182 135529684 -91994894 + L1MC2 LINE L1 5321 5831 -513 2425 90 3 0 chr3 135529684 135529995 -91994583 + AluSq SINE Alu 1 312 -1 3441 185 51 87 chr3 135529998 135530315 -91994263 + L1MA10 LINE L1 4012 4339 -1807 1841 138 75 19 chr3 135530315 135530634 -91993944 - MER1B DNA MER1_type 0 337 1 3441 185 51 87 chr3 135530634 135531088 -91993490 + L1MA10 LINE L1 4339 4808 -1338 840 120 19 63 chr3 135531088 135531246 -91993332 + AluSg/x SINE Alu 162 312 0 3441 185 51 87 chr3 135531246 135531835 -91992743 + L1MA10 LINE L1 4808 5391 -755 3069 174 57 45 chr3 135531834 135532537 -91992041 + L1MA10 LINE L1 5613 6323 -11 * 2222 98 0 46 chr3 135532629 135532954 -91991624 - AluSx SINE Alu -2 310 1 837 126 0 70 chr3 135532959 135533102 -91991476 - FLAM_C SINE Alu 0 133 1 25 0 0 0 chr3 135533388 135533413 -91991165 + AT_rich Low_complexity Low_complexity 1 25 0 184 302 58 47 chr3 135533977 135534063 -91990515 - MIR3 SINE MIR -30 178 92 1669 219 82 34 chr3 135534422 135534677 -91989901 + L1ME LINE L1 4338 4579 -1567 2166 97 7 0 chr3 135534677 135534966 -91989612 - AluSg SINE Alu -19 291 1 1669 219 82 34 chr3 135534966 135535307 -91989271 + L1ME LINE L1 4579 4963 -1183 195 69 0 0 chr3 135535323 135535352 -91989226 + (TCCCC)n Simple_repeat Simple_repeat 3 31 0 623 103 10 0 chr3 135535360 135535457 -91989121 + (TC)n Simple_repeat Simple_repeat 1 98 0 2002 112 18 0 chr3 135535458 135535744 -91988834 - AluY SINE Alu -20 291 1 723 141 30 44 chr3 135535747 135535882 -91988696 - AluJo/FLAM SINE Alu -169 133 1 3332 231 125 18 chr3 135535917 135536600 -91987978 + L1MC2 LINE L1 3661 4269 -1877 2255 108 0 0 chr3 135536600 135536897 -91987681 + AluSx SINE Alu 1 297 -15 3332 231 125 18 chr3 135536897 135537345 -91987233 + L1MC2 LINE L1 4269 4914 -1232 2152 183 120 24 chr3 135537345 135537838 -91986740 + MER44D DNA MER2_type 2 596 -9 1013 176 10 10 chr3 135537844 135538043 -91986535 + L1ME LINE L1 5301 5499 -667 2219 92 0 52 chr3 135538080 135538405 -91986173 + AluSg SINE Alu 1 308 -2 2883 3 0 0 chr3 135539192 135539501 -91985077 - AluYa5 SINE Alu -2 309 1 262 32 0 0 chr3 135539585 135539616 -91984962 + MSTC LTR MaLR 330 360 -68 243 179 54 18 chr3 135539614 135539670 -91984908 + Tigger7 DNA MER2_type 2188 2245 -342 * 2142 94 0 0 chr3 135540017 135540321 -91984257 - AluY SINE Alu 0 308 5 370 278 0 0 chr3 135540658 135540755 -91983823 - MIR SINE MIR -19 243 147 4171 149 18 18 chr3 135540767 135541472 -91983106 + MER44D DNA MER2_type 1 705 0 5111 184 41 31 chr3 135541472 135541882 -91982696 + L1MC2 LINE L1 4912 5316 -1028 1454 164 62 78 chr3 135541882 135542253 -91982325 + MLT1A1 LTR MaLR 1 365 0 5111 184 41 31 chr3 135542253 135542755 -91981823 + L1MC2 LINE L1 5316 5811 -533 2181 107 3 0 chr3 135542755 135543046 -91981532 + AluSq SINE Alu 1 292 -21 5111 184 41 31 chr3 135543046 135543511 -91981067 + L1MC2 LINE L1 5811 6313 -31 3952 183 48 12 chr3 135543508 135544322 -91980256 + L1MB7 LINE L1 5334 6176 -8 * 21 0 0 0 chr3 135544356 135544377 -91980201 + AT_rich Low_complexity Low_complexity 1 21 0 802 248 71 34 chr3 135544860 135545154 -91979424 + LTR16B LTR ERVL 11 315 -149 227 255 21 0 chr3 135545527 135545574 -91979004 - L2 LINE L2 -16 3256 3209 191 268 0 0 chr3 135545576 135545617 -91978961 - MIR SINE MIR -104 158 118 2362 164 52 2 chr3 135545634 135546097 -91978481 + LTR19A LTR ERV1 1 486 0 1201 67 0 0 chr3 135546097 135546246 -91978332 + HERVFH19I LTR ERV1 1 149 -7570 * 6448 100 55 14 chr3 135546226 135547195 -91977383 + HERVFH19I LTR ERV1 277 1284 -4302 * 6973 107 50 47 chr3 135547192 135547949 -91976629 + HERVFH19I LTR ERV1 1436 2200 -3386 2174 115 0 3 chr3 135547949 135548244 -91976334 - AluSp SINE Alu -19 294 1 6973 107 50 47 chr3 135548244 135548818 -91975760 + HERVFH19I LTR ERV1 2200 2771 -2815 36356 93 14 8 chr3 135548818 135554924 -91969654 + L1PA6 LINE L1 9 6148 -6 14542 73 39 12 chr3 135554924 135556952 -91967626 + HERVFH19I LTR ERV1 2761 4842 -744 1901 152 3 10 chr3 135556952 135557261 -91967317 + AluSx SINE Alu 2 308 -4 2350 68 26 0 chr3 135557261 135557569 -91967009 + LTR19A-int LTR ERV1 5271 5586 0 2606 136 22 54 chr3 135557569 135558071 -91966507 + LTR19A LTR ERV1 1 486 0 2094 126 7 0 chr3 135558237 135558538 -91966040 + AluSq SINE Alu 1 303 -10 189 0 0 0 chr3 135559100 135559121 -91965457 + (A)n Simple_repeat Simple_repeat 1 21 0 941 330 41 13 chr3 135559468 135560171 -91964407 + L1MD3 LINE L1 4386 5108 -1038 980 246 29 29 chr3 135560295 135560608 -91963970 + L1MD3 LINE L1 5270 5582 -2226 585 265 91 32 chr3 135560605 135561439 -91963139 + L1MD3 LINE L1 5804 6578 -1230 * 2880 190 86 54 chr3 135561437 135561479 -91963099 + L1MC4 LINE L1 6947 6986 -1056 1977 88 66 4 chr3 135561479 135561751 -91962827 - AluY SINE Alu -22 289 1 2880 190 86 54 chr3 135561751 135562640 -91961938 + L1MC4 LINE L1 6986 7908 -134 1438 196 11 35 chr3 135562650 135562935 -91961643 + AluJo SINE Alu 18 295 -17 341 293 78 0 chr3 135562936 135563052 -91961526 + L1MC4 LINE L1 7901 8025 -17 1689 75 163 8 chr3 135563061 135563313 -91961265 - AluSg1 SINE Alu -18 291 1 2267 120 0 0 chr3 135563327 135563627 -91960951 - AluSx SINE Alu -12 300 1 23 68 0 0 chr3 135564163 135564207 -91960371 + AT_rich Low_complexity Low_complexity 1 44 0 256 300 25 0 chr3 135565078 135565198 -91959380 + L1M4 LINE L1 4500 4622 -1524 441 281 85 53 chr3 135565279 135565582 -91958996 + L1M4 LINE L1 4733 5049 -1097 702 248 92 39 chr3 135565740 135566146 -91958432 + MLT1F LTR MaLR 1 491 -51 552 240 23 0 chr3 135566260 135566389 -91958189 + FLAM_C SINE Alu 1 132 -11 440 259 64 67 chr3 135566879 135567072 -91957506 + MIR SINE MIR 3 186 -74 187 410 0 0 chr3 135567912 135568012 -91956566 - L2 LINE L2 -976 2338 2239 205 205 0 0 chr3 135568388 135568427 -91956151 + A-rich Low_complexity Low_complexity 1 39 0 1016 141 70 11 chr3 135568452 135568507 -91956071 + MSTB LTR MaLR 1 51 -375 1701 65 0 0 chr3 135568507 135568708 -91955870 - AluY SINE Alu -6 305 105 1016 141 70 11 chr3 135568708 135568837 -91955741 + MSTB LTR MaLR 51 196 -230 774 169 0 0 chr3 135568840 135568958 -91955620 + FLAM_C SINE Alu 4 121 -22 219 69 0 0 chr3 135568958 135568987 -91955591 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1220 169 35 9 chr3 135568987 135569218 -91955360 + MSTB LTR MaLR 190 426 0 2212 113 6 0 chr3 135569912 135570223 -91954355 - AluSq SINE Alu 0 313 1 229 241 203 0 chr3 135570362 135570441 -91954137 - MIR SINE MIR -88 174 80 21 0 0 0 chr3 135570689 135570710 -91953868 + AT_rich Low_complexity Low_complexity 1 21 0 820 108 31 8 chr3 135570862 135570991 -91953587 - AluY SINE Alu -73 238 107 650 158 8 24 chr3 135570996 135571123 -91953455 + MSTB LTR MaLR 72 196 -230 774 169 0 0 chr3 135571126 135571244 -91953334 + FLAM_C SINE Alu 4 121 -22 219 69 0 0 chr3 135571244 135571273 -91953305 + (TAA)n Simple_repeat Simple_repeat 2 30 0 1222 177 30 9 chr3 135571273 135571505 -91953073 + MSTB LTR MaLR 190 426 0 2254 112 3 0 chr3 135572198 135572510 -91952068 - AluSq SINE Alu 0 313 1 229 241 203 0 chr3 135572649 135572728 -91951850 - MIR SINE MIR -88 174 80 32060 105 24 13 chr3 135573653 135579727 -91944851 + L1PA7 LINE L1 11 6154 0 340 186 0 0 chr3 135580571 135580659 -91943919 + AluJ/FRAM SINE Alu 224 311 0 1767 164 0 4 chr3 135580659 135580934 -91943644 + AluSx SINE Alu 1 274 -38 2233 114 0 0 chr3 135582200 135582498 -91942080 - AluSx SINE Alu -14 298 1 3968 220 86 58 chr3 135583206 135584431 -91940147 - HERVI LTR ERV1 -1856 5799 4609 194 208 69 28 chr3 135584431 135584503 -91940075 - L2 LINE L2 -1886 1428 1354 3968 220 86 58 chr3 135584503 135585142 -91939436 - HERVI LTR ERV1 -3046 4609 2608 5245 248 16 11 chr3 135585725 135587059 -91937519 + HERVI LTR ERV1 6412 7752 -33 1221 235 109 45 chr3 135587281 135587795 -91936783 + LTR10B LTR ERV1 1 547 0 2814 137 15 119 chr3 135587795 135588549 -91936029 + L1MC2 LINE L1 5670 6344 0 21 0 0 0 chr3 135588622 135588643 -91935935 + AT_rich Low_complexity Low_complexity 1 21 0 1999 141 0 10 chr3 135588643 135588949 -91935629 - AluSx SINE Alu -9 303 1 263 288 0 0 chr3 135588975 135589034 -91935544 + MIR3 SINE MIR 101 159 -49 311 313 191 0 chr3 135589655 135589770 -91934808 - L2 LINE L2 0 3272 3136 325 206 192 68 chr3 135589825 135589971 -91934607 + L1ME3 LINE L1 5989 6152 -10 1240 203 11 27 chr3 135590437 135590698 -91933880 + MIR SINE MIR 3 259 -3 306 298 83 8 chr3 135591473 135591594 -91932984 - L2 LINE L2 -211 3061 2932 1043 203 0 55 chr3 135591801 135591953 -91932625 - MER58A DNA MER1_type -2196 224 88 2304 163 41 11 chr3 135591953 135592395 -91932183 - MSTB2 LTR MaLR 0 457 3 1043 203 0 55 chr3 135592395 135592479 -91932099 - MER58A DNA MER1_type -2332 88 1 192 293 83 115 chr3 135592480 135592794 -91931784 - L2 LINE L2 -703 2611 2308 28 29 0 0 chr3 135592871 135592906 -91931672 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr3 135592920 135592941 -91931637 + GC_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr3 135592941 135592968 -91931610 + AT_rich Low_complexity Low_complexity 1 27 0 23 33 0 0 chr3 135593008 135593038 -91931540 + GC_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr3 135593041 135593064 -91931514 + AT_rich Low_complexity Low_complexity 1 23 0 189 94 0 0 chr3 135593086 135593118 -91931460 + (T)n Simple_repeat Simple_repeat 1 32 0 26 0 0 0 chr3 135593121 135593147 -91931431 + GC_rich Low_complexity Low_complexity 1 26 0 812 260 33 8 chr3 135593731 135593973 -91930605 - HERVI LTR ERV1 -6500 1285 1038 * 2376 192 46 102 chr3 135593966 135594829 -91929749 - HERVI LTR ERV1 -5832 817 3 1065 233 108 42 chr3 135594851 135595307 -91929271 - LTR10B LTR ERV1 -47 500 15 2157 163 26 16 chr3 135595331 135596024 -91928554 - L1MC/D LINE L1 -671 5673 4980 1211 184 160 4 chr3 135596173 135596423 -91928155 - AluJb SINE Alu -13 289 1 404 199 74 53 chr3 135596521 135596650 -91927928 + MIR SINE MIR 6 140 -68 266 150 0 33 chr3 135597075 135597135 -91927443 - Alu SINE Alu 0 302 245 2213 110 7 0 chr3 135597892 135598193 -91926385 - AluSx SINE Alu -9 303 1 4466 186 62 47 chr3 135598529 135599267 -91925311 + L1MB8 LINE L1 3939 4664 -1514 1496 176 75 73 chr3 135599267 135599602 -91924976 - MLT1C LTR MaLR 0 467 129 1906 130 25 7 chr3 135599602 135599886 -91924692 - AluSx SINE Alu -19 293 5 1496 176 75 73 chr3 135599886 135600016 -91924562 - MLT1C LTR MaLR -338 129 1 4466 186 62 47 chr3 135600016 135600716 -91923862 + L1MB8 LINE L1 4664 5352 -826 1896 127 132 48 chr3 135600716 135601111 -91923467 - MSTA LTR MaLR 0 428 1 4466 186 62 47 chr3 135601111 135601858 -91922720 + L1MB8 LINE L1 5352 6177 -1 768 152 67 98 chr3 135601982 135602044 -91922534 - MER33 DNA MER1_type -2261 324 262 788 167 0 0 chr3 135602044 135602170 -91922408 - FLAM_A SINE Alu -5 128 3 768 152 67 98 chr3 135602170 135602214 -91922364 - MER33 DNA MER1_type -2323 262 218 2252 103 0 0 chr3 135602214 135602504 -91922074 - AluSg SINE Alu -14 296 7 768 152 67 98 chr3 135602504 135602712 -91921866 - MER33 DNA MER1_type -2367 218 19 644 307 58 29 chr3 135603899 135604261 -91920317 - L2 LINE L2 -169 3144 2767 488 246 29 121 chr3 135604267 135604539 -91920039 - L2 LINE L2 -990 2324 2078 189 250 0 50 chr3 135604556 135604616 -91919962 - L2 LINE L2 -2792 522 466 410 171 63 18 chr3 135606839 135606950 -91917628 - L1ME4a LINE L1 -24 6097 5982 798 264 16 40 chr3 135606966 135607288 -91917290 - L1ME4a LINE L1 -196 5925 5612 2271 106 0 7 chr3 135607311 135607613 -91916965 - AluSx SINE Alu -12 300 1 941 101 31 0 chr3 135607624 135607753 -91916825 - AluSg/x SINE Alu -15 295 163 1535 167 33 65 chr3 135608677 135608983 -91915595 - AluJo SINE Alu -16 296 1 21 36 0 0 chr3 135609845 135609873 -91914705 + AT_rich Low_complexity Low_complexity 1 28 0 1851 76 141 0 chr3 135609883 135610145 -91914433 + AluSx SINE Alu 1 299 -3 335 193 0 0 chr3 135610184 135610241 -91914337 + AluS SINE Alu 1 57 -244 37 0 0 0 chr3 135610262 135610299 -91914279 + AT_rich Low_complexity Low_complexity 1 37 0 181 188 0 0 chr3 135611155 135611187 -91913391 + L2 LINE L2 3263 3294 -19 2519 77 0 3 chr3 135611364 135611675 -91912903 + AluSg SINE Alu 1 310 0 496 279 62 12 chr3 135612169 135612330 -91912248 - MER5A DNA MER1_type -18 171 3 204 339 55 49 chr3 135612337 135612520 -91912058 - MIR SINE MIR -72 190 7 243 321 45 9 chr3 135614120 135614232 -91910346 - MIR SINE MIR -65 197 82 990 178 89 126 chr3 135614232 135614479 -91910099 - MER8 DNA MER2_type 0 239 2 5390 125 108 7 chr3 135616331 135617189 -91907389 + Tigger1 DNA MER2_type 24 968 -1450 2586 110 50 14 chr3 135617189 135617222 -91907356 + Tigger1 DNA MER2_type 1563 1593 -825 2315 72 0 39 chr3 135617222 135617528 -91907050 + AluSg SINE Alu 4 297 -13 2586 110 50 14 chr3 135617528 135617911 -91906667 + Tigger1 DNA MER2_type 1593 1994 -424 604 191 0 26 chr3 135617931 135618046 -91906532 + FLAM_A SINE Alu 22 133 -9 2183 140 122 0 chr3 135618046 135618431 -91906147 + Tigger1 DNA MER2_type 1984 2415 -3 190 91 0 68 chr3 135618557 135618601 -91905977 + (GAAA)n Simple_repeat Simple_repeat 2 42 0 1528 126 17 96 chr3 135620054 135620356 -91904222 + AluJo SINE Alu 13 290 -22 556 229 46 80 chr3 135620897 135621072 -91903506 + L1MB8 LINE L1 5873 6041 -137 1431 134 74 5 chr3 135621072 135621288 -91903290 + AluSq SINE Alu 1 231 -82 505 233 133 65 chr3 135621374 135621743 -91902835 + HAL1b LINE L1 1 394 -954 450 263 15 38 chr3 135621835 135621968 -91902610 + MIR3 SINE MIR 58 187 -21 453 19 0 0 chr3 135622508 135622562 -91902016 + (CA)n Simple_repeat Simple_repeat 2 55 0 2128 104 35 0 chr3 135622564 135622851 -91901727 - AluSx SINE Alu -15 297 1 335 109 0 0 chr3 135622981 135623027 -91901551 - AluSg1 SINE Alu -122 178 133 795 103 0 0 chr3 135623027 135623124 -91901454 - AluSg1 SINE Alu -211 98 2 8914 187 53 28 chr3 135623126 135625043 -91899535 + L1MA9 LINE L1 3341 5361 -951 2651 30 3 0 chr3 135625043 135625343 -91899235 + AluY SINE Alu 1 301 -10 8914 187 53 28 chr3 135625343 135626297 -91898281 + L1MA9 LINE L1 5361 6290 -22 261 317 167 61 chr3 135626367 135626547 -91898031 + MIR SINE MIR 46 244 -18 2078 102 26 16 chr3 135627050 135627355 -91897223 - AluSx SINE Alu -4 308 1 306 0 0 0 chr3 135627419 135627453 -91897125 + (CA)n Simple_repeat Simple_repeat 2 35 0 1915 109 27 20 chr3 135627453 135627747 -91896831 - AluSx SINE Alu -16 296 1 369 0 0 0 chr3 135627813 135627854 -91896724 + (CA)n Simple_repeat Simple_repeat 2 42 0 1994 147 7 0 chr3 135627902 135628195 -91896383 - AluSx SINE Alu -17 295 1 1613 193 14 0 chr3 135628511 135628796 -91895782 + AluJo SINE Alu 1 289 -23 238 92 15 77 chr3 135628800 135628865 -91895713 + (GGAGAA)n Simple_repeat Simple_repeat 1 61 0 2078 143 3 0 chr3 135629047 135629348 -91895230 + AluSx SINE Alu 1 302 -10 2314 82 20 0 chr3 135629771 135630064 -91894514 + AluSc SINE Alu 1 299 -10 1328 159 29 93 chr3 135630803 135630884 -91893694 + MER33 DNA MER1_type 1 86 -2499 2524 78 0 0 chr3 135630884 135631192 -91893386 - AluSg1 SINE Alu -1 308 1 1328 159 29 93 chr3 135631192 135631455 -91893123 + MER33 DNA MER1_type 86 323 -1 229 229 0 0 chr3 135631716 135631764 -91892814 + L1MC/D LINE L1 5767 5814 -530 * 414 201 182 26 chr3 135631759 135631913 -91892665 + HAL1 LINE L1 1745 1922 -585 2969 166 94 5 chr3 135632063 135632636 -91891942 + L1MB7 LINE L1 5551 6174 -10 296 272 184 43 chr3 135632641 135633016 -91891562 + HAL1 LINE L1 2078 2505 -2 1703 144 0 22 chr3 135634049 135634319 -91890259 + AluSx SINE Alu 34 297 -15 1733 162 10 20 chr3 135635018 135635315 -91889263 + AluJb SINE Alu 5 298 -14 2100 126 0 3 chr3 135635750 135636044 -91888534 + AluSg SINE Alu 1 293 -17 2351 71 0 7 chr3 135636390 135636686 -91887892 - AluSc SINE Alu -10 299 6 23 54 0 0 chr3 135638534 135638571 -91886007 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 135638718 135638740 -91885838 + AT_rich Low_complexity Low_complexity 1 22 0 265 362 32 23 chr3 135638924 135639142 -91885436 + L2 LINE L2 2350 2569 -745 210 234 21 0 chr3 135642369 135642416 -91882162 + G-rich Low_complexity Low_complexity 5 52 0 216 0 0 0 chr3 135642877 135642901 -91881677 + (CGG)n Simple_repeat Simple_repeat 2 25 0 212 125 0 42 chr3 135642979 135643027 -91881551 + (TCC)n Simple_repeat Simple_repeat 1 46 0 25 31 0 0 chr3 135644099 135644131 -91880447 + GC_rich Low_complexity Low_complexity 1 32 0 1027 208 53 85 chr3 135644712 135645030 -91879548 - MER102b DNA MER1_type -6 335 28 1531 102 14 0 chr3 135645122 135645338 -91879240 - AluSp SINE Alu -9 304 86 590 57 0 34 chr3 135645485 135645573 -91879005 + AluSp/q SINE Alu 220 304 -9 193 328 0 0 chr3 135645611 135645675 -91878903 - L2 LINE L2 -277 2995 2932 23 33 0 0 chr3 135646000 135646030 -91878548 + AT_rich Low_complexity Low_complexity 1 30 0 867 199 58 13 chr3 135646065 135646221 -91878357 - FRAM SINE Alu 0 166 4 1657 159 83 0 chr3 135646596 135646872 -91877706 - AluJb SINE Alu -13 299 1 3840 107 23 32 chr3 135647611 135647781 -91876797 - MER41A LTR ERV1 0 554 384 2191 91 17 7 chr3 135647781 135648078 -91876500 - AluSp SINE Alu -13 300 1 3840 107 23 32 chr3 135648078 135648466 -91876112 - MER41A LTR ERV1 -170 384 1 1225 116 12 104 chr3 135649283 135649524 -91875054 - AluJo SINE Alu -10 302 84 1494 181 30 13 chr3 135649706 135650010 -91874568 - AluJo SINE Alu -3 309 1 294 29 0 0 chr3 135650013 135650048 -91874530 + (T)n Simple_repeat Simple_repeat 1 35 0 188 292 0 0 chr3 135650703 135650751 -91873827 + L2 LINE L2 3221 3268 -4 2741 106 17 0 chr3 135652126 135652484 -91872094 - THE1B LTR MaLR 0 364 1 2546 84 14 3 chr3 135652528 135652873 -91871705 + THE1A LTR MaLR 7 355 0 184 234 0 94 chr3 135652957 135653021 -91871557 - MIR SINE MIR -89 173 116 1721 169 37 0 chr3 135653023 135653318 -91871260 + AluJb SINE Alu 1 306 -6 188 365 0 0 chr3 135653724 135653776 -91870802 - L2 LINE L2 -4 3268 3217 2266 85 3 0 chr3 135653788 135654105 -91870473 - AluSp SINE Alu 0 318 1 208 189 0 0 chr3 135654189 135654237 -91870341 + L2 LINE L2 3225 3313 0 1824 130 23 4 chr3 135655170 135655431 -91869147 + AluSx SINE Alu 9 274 -38 2031 135 35 0 chr3 135655878 135656167 -91868411 + AluSq SINE Alu 1 299 -14 2346 92 0 0 chr3 135656379 135656673 -91867905 - AluSg SINE Alu -16 294 1 386 279 0 16 chr3 135657608 135657730 -91866848 - MIR3 SINE MIR -6 202 83 1810 174 29 0 chr3 135658703 135659013 -91865565 - 7SLRNA srpRNA srpRNA 0 320 2 2219 87 11 0 chr3 135659759 135660045 -91864533 + AluSq SINE Alu 1 289 -24 2335 97 7 0 chr3 135660794 135661102 -91863476 + AluY SINE Alu 2 311 0 676 199 9 122 chr3 135661229 135661450 -91863128 - MIR SINE MIR -2 260 65 331 309 37 116 chr3 135661581 135661934 -91862644 - L2 LINE L2 -19 3253 2929 360 314 118 13 chr3 135662062 135662215 -91862363 - L3 LINE CR1 -3 1574 1406 * 476 190 165 57 chr3 135662213 135662371 -91862207 + L2 LINE L2 3135 3309 -4 * 820 300 63 30 chr3 135662368 135662864 -91861714 - L3 LINE CR1 -164 1413 815 236 220 34 34 chr3 135662861 135662920 -91861658 - L2 LINE L2 -683 2631 2573 * 421 361 90 36 chr3 135663180 135663826 -91860752 - L2 LINE L2 -860 2454 1774 996 167 0 0 chr3 135664016 135664172 -91860406 + FAM SINE Alu 1 45 -4 5657 67 150 58 chr3 135664498 135665571 -91859007 + MER11A LTR ERVK 1 1266 0 433 236 6 124 chr3 135665573 135665751 -91858827 - MIR3 SINE MIR -4 204 48 * 613 305 40 22 chr3 135665711 135665934 -91858644 + MIR SINE MIR 23 249 -13 768 226 72 10 chr3 135666038 135666246 -91858332 + Charlie2 DNA MER1_type 1 221 -2641 1415 189 50 94 chr3 135666375 135666548 -91858030 + Charlie2 DNA MER1_type 2234 2413 -449 2269 129 3 0 chr3 135666548 135666859 -91857719 + AluSx SINE Alu 1 312 0 1415 189 50 94 chr3 135666859 135667304 -91857274 + Charlie2 DNA MER1_type 2413 2825 -37 982 141 70 49 chr3 135667766 135667891 -91856687 - MER5A DNA MER1_type 0 189 57 1948 125 17 17 chr3 135667891 135668186 -91856392 + AluSx SINE Alu 1 295 -17 982 141 70 49 chr3 135668186 135668245 -91856333 - MER5A DNA MER1_type -132 57 1 414 259 30 15 chr3 135668519 135668654 -91855924 - MIR SINE MIR -6 256 120 1236 126 0 11 chr3 135668673 135668848 -91855730 + AluSg/x SINE Alu 136 308 -4 197 105 0 26 chr3 135669371 135669409 -91855169 + (TG)n Simple_repeat Simple_repeat 2 38 0 1282 276 94 26 chr3 135669421 135670146 -91854432 + L1M4b LINE L1 1349 2322 -4816 2103 157 6 3 chr3 135670146 135670464 -91854114 + 7SLRNA srpRNA srpRNA 1 319 -1 1282 276 94 26 chr3 135670464 135670602 -91853976 + L1M4b LINE L1 2322 2449 -4689 769 141 63 7 chr3 135670595 135670737 -91853841 - L1M4 LINE L1 -1939 4207 4058 * 1484 184 50 8 chr3 135670813 135671074 -91853504 - AluJb SINE Alu -40 272 1 323 309 79 94 chr3 135671139 135671221 -91853357 + L3 LINE CR1 1310 1392 -185 1964 108 43 0 chr3 135671221 135671499 -91853079 - AluSx SINE Alu -21 291 2 323 309 79 94 chr3 135671499 135671681 -91852897 + L3 LINE CR1 1392 1570 -7 21 57 0 0 chr3 135672347 135672382 -91852196 + AT_rich Low_complexity Low_complexity 1 35 0 2309 88 13 3 chr3 135672393 135672700 -91851878 - AluSq SINE Alu -3 310 1 1924 157 3 7 chr3 135672703 135672990 -91851588 - AluSx SINE Alu -22 290 5 258 32 0 0 chr3 135673055 135673086 -91851492 + (TTA)n Simple_repeat Simple_repeat 3 33 0 1927 140 4 0 chr3 135673086 135673365 -91851213 - AluSx SINE Alu -32 280 1 503 286 15 0 chr3 135673569 135673765 -91850813 - L1MC4a LINE L1 -1886 5922 5724 405 0 0 0 chr3 135673948 135673993 -91850585 + (GA)n Simple_repeat Simple_repeat 2 46 0 283 372 16 16 chr3 135673998 135674119 -91850459 - MER5B DNA MER1_type -9 169 49 389 282 121 47 chr3 135674619 135675006 -91849572 - L1ME4a LINE L1 -212 5909 5494 185 0 40 0 chr3 135675125 135675150 -91849428 + (ACTTG)n Simple_repeat Simple_repeat 2 27 0 416 291 133 30 chr3 135675155 135675221 -91849357 + MIR SINE MIR 38 96 -166 2141 109 0 17 chr3 135675221 135675514 -91849064 - AluSx SINE Alu -24 288 1 416 291 133 30 chr3 135675514 135675650 -91848928 + MIR SINE MIR 96 261 -1 194 351 18 53 chr3 135675649 135675763 -91848815 - L2 LINE L2 -25 3247 3138 * 2203 123 7 0 chr3 135675889 135676191 -91848387 - AluSx SINE Alu -8 304 1 687 193 7 22 chr3 135676281 135676416 -91848162 - FLAM_C SINE Alu 0 133 1 1827 102 25 0 chr3 135676446 135676691 -91847887 - AluSx SINE Alu -30 282 32 467 288 73 0 chr3 135676692 135676869 -91847709 - L1MC4a LINE L1 -1927 5881 5692 409 272 21 47 chr3 135677069 135677260 -91847318 + MER112 DNA MER1_type 65 250 -10 1884 166 7 7 chr3 135678755 135679062 -91845516 + AluSx SINE Alu 1 307 -5 2233 108 0 0 chr3 135679701 135679998 -91844580 + AluY SINE Alu 1 297 -14 1765 173 20 3 chr3 135680022 135680328 -91844250 - AluJb SINE Alu -1 311 1 366 191 99 7 chr3 135680333 135680474 -91844104 - L1 LINE L1 -2812 3334 3181 296 289 252 0 chr3 135680494 135680629 -91843949 - MIR SINE MIR -43 219 51 29 0 0 0 chr3 135680797 135680826 -91843752 + AT_rich Low_complexity Low_complexity 1 29 0 1312 191 53 57 chr3 135680948 135681247 -91843331 - AluJo SINE Alu -14 298 1 619 215 37 15 chr3 135681255 135681390 -91843188 - MIR SINE MIR -122 140 3 1726 123 26 93 chr3 135681766 135682076 -91842502 - AluSx SINE Alu -23 289 1 3113 117 29 2 chr3 135682498 135682976 -91841602 - MER1A DNA MER1_type 0 529 39 253 269 100 62 chr3 135683391 135683521 -91841057 - MIR SINE MIR -114 148 14 408 245 123 7 chr3 135683854 135684009 -91840569 + MIR SINE MIR 90 262 0 2197 107 0 0 chr3 135684102 135684419 -91840159 - AluSc SINE Alu 0 317 1 212 309 0 0 chr3 135685283 135685338 -91839240 + CT-rich Low_complexity Low_complexity 5 59 0 772 239 77 86 chr3 135685479 135685627 -91838951 - L1MC5 LINE L1 -37 7924 7776 2074 117 3 0 chr3 135685627 135685932 -91838646 - AluSx SINE Alu 0 307 2 2455 83 0 0 chr3 135685940 135686241 -91838337 - AluSg SINE Alu -9 301 1 772 239 77 86 chr3 135686241 135686696 -91837882 - L1MC5 LINE L1 -192 7769 7317 1339 179 136 27 chr3 135686719 135687049 -91837529 + MER47A DNA MER2_type 1 366 0 1216 116 106 0 chr3 135687232 135687439 -91837139 - MER30 DNA MER1_type -1 229 1 1041 209 28 5 chr3 135687454 135687665 -91836913 + MER58A DNA MER1_type 7 222 -2 965 240 133 34 chr3 135687668 135688193 -91836385 - L1MC5 LINE L1 -757 7204 6628 4085 186 55 17 chr3 135688266 135690045 -91834533 - L1MB5 LINE L1 -38 6136 4279 24 53 0 0 chr3 135690205 135690243 -91834335 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr3 135690336 135690357 -91834221 + AT_rich Low_complexity Low_complexity 1 21 0 1674 133 60 0 chr3 135690357 135690606 -91833972 - AluSx SINE Alu -22 290 27 2381 86 0 3 chr3 135690606 135690907 -91833671 - AluSx SINE Alu -10 302 1 294 225 25 75 chr3 135691604 135691684 -91832894 + L2 LINE L2 3194 3269 -44 1995 118 4 0 chr3 135692320 135692599 -91831979 + AluSp SINE Alu 1 280 -33 252 0 0 0 chr3 135692601 135692629 -91831949 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 21 0 0 0 chr3 135693127 135693148 -91831430 + AT_rich Low_complexity Low_complexity 1 21 0 186 43 0 0 chr3 135693428 135693451 -91831127 + (TAAA)n Simple_repeat Simple_repeat 4 26 0 1842 166 7 0 chr3 135693605 135693906 -91830672 - AluJb SINE Alu -9 303 1 366 288 40 93 chr3 135694025 135694303 -91830275 + L2 LINE L2 3008 3270 -43 * 392 297 17 8 chr3 135694270 135694388 -91830190 + L2 LINE L2 3154 3272 0 218 209 23 0 chr3 135694571 135694614 -91829964 + L2 LINE L2 3267 3310 -3 248 284 49 25 chr3 135694969 135695050 -91829528 - L2 LINE L2 -5 3267 3185 420 241 152 52 chr3 135695278 135695322 -91829256 - MIR SINE MIR -6 256 218 2182 136 0 0 chr3 135695322 135695624 -91828954 - AluSx SINE Alu -10 302 1 420 241 152 52 chr3 135695624 135695770 -91828808 - MIR SINE MIR -44 218 47 664 158 82 61 chr3 135695904 135696100 -91828478 + MER33 DNA MER1_type 22 221 -103 202 259 69 0 chr3 135696524 135696582 -91827996 - MIR SINE MIR -96 166 105 272 206 63 0 chr3 135696583 135696646 -91827932 + MIR SINE MIR 158 224 -38 299 276 124 38 chr3 135696809 135697019 -91827559 - L1ME LINE L1 -331 5790 5563 22 0 0 0 chr3 135697101 135697123 -91827455 + AT_rich Low_complexity Low_complexity 1 22 0 2055 147 0 6 chr3 135697179 135697491 -91827087 - AluSx SINE Alu -2 310 1 1249 180 134 92 chr3 135697650 135697713 -91826865 - Charlie1b DNA MER1_type -2240 521 462 2080 123 3 3 chr3 135697713 135698006 -91826572 + AluSx SINE Alu 1 293 -19 1249 180 134 92 chr3 135698006 135698442 -91826136 - Charlie1b DNA MER1_type -2299 462 1 183 203 34 17 chr3 135699383 135699442 -91825136 - L2 LINE L2 -831 2483 2424 412 303 196 10 chr3 135699539 135700050 -91824528 - L2 LINE L2 -946 2368 1763 2181 116 40 20 chr3 135700368 135700721 -91823857 - THE1B LTR MaLR 0 364 5 2216 98 7 0 chr3 135701000 135701295 -91823283 - AluSx SINE Alu -15 297 1 673 207 129 46 chr3 135701342 135701559 -91823019 + MIR SINE MIR 28 262 0 1992 112 0 7 chr3 135702303 135702579 -91821999 - AluSx SINE Alu -38 274 1 2290 115 3 0 chr3 135703475 135703780 -91820798 - AluSx SINE Alu -6 306 1 2281 105 0 29 chr3 135703899 135704214 -91820364 - AluSx SINE Alu -2 310 5 456 303 64 69 chr3 135704231 135704697 -91819881 - LTR67 LTR ERVL -2 555 92 281 155 28 0 chr3 135704821 135704892 -91819686 + (CAAAC)n Simple_repeat Simple_repeat 2 74 0 2066 134 3 10 chr3 135705315 135705620 -91818958 + AluSx SINE Alu 1 303 -9 1706 181 3 13 chr3 135705769 135706067 -91818511 - AluJo SINE Alu -17 295 1 2278 101 7 0 chr3 135706219 135706515 -91818063 + AluSq SINE Alu 1 298 -15 5099 86 44 0 chr3 135706524 135707277 -91817301 + L1MA1 LINE L1 5516 6301 -1 200 383 86 36 chr3 135707421 135707643 -91816935 + L2 LINE L2 2825 3057 -215 21 0 0 0 chr3 135708583 135708604 -91815974 + AT_rich Low_complexity Low_complexity 1 21 0 2323 105 0 0 chr3 135708649 135708943 -91815635 + AluSx SINE Alu 1 294 -18 214 222 0 19 chr3 135708944 135708998 -91815580 + (TA)n Simple_repeat Simple_repeat 1 53 0 7105 121 19 21 chr3 135708998 135709400 -91815178 + Tigger1 DNA MER2_type 2 403 -2015 2298 94 0 7 chr3 135709400 135709709 -91814869 + AluSg1 SINE Alu 1 307 -2 7105 121 19 21 chr3 135709709 135710467 -91814111 + Tigger1 DNA MER2_type 403 1160 -1258 4055 84 20 200 chr3 135710467 135712081 -91812497 + pTR5 LTR ERV1 749 2606 0 6780 129 17 21 chr3 135712082 135713179 -91811399 + Tigger1 DNA MER2_type 1156 2256 -162 278 0 113 0 chr3 135713179 135713241 -91811337 + (TA)n Simple_repeat Simple_repeat 1 69 0 2265 81 7 0 chr3 135713241 135713524 -91811054 - AluSp SINE Alu -28 285 1 6780 129 17 21 chr3 135713524 135713611 -91810967 + Tigger1 DNA MER2_type 2254 2336 -82 1566 152 16 65 chr3 135713611 135713824 -91810754 - AluJo SINE Alu -18 294 99 2054 123 0 0 chr3 135713824 135714117 -91810461 - AluSq SINE Alu -15 298 16 1566 152 16 65 chr3 135714117 135714212 -91810366 - AluJo SINE Alu -213 99 1 931 168 0 6 chr3 135714982 135715143 -91809435 + FRAM SINE Alu 1 154 -22 2371 66 3 0 chr3 135715373 135715674 -91808904 + AluY SINE Alu 1 302 -9 687 191 151 0 chr3 135716071 135716223 -91808355 - MER5A DNA MER1_type -6 183 9 1806 154 0 22 chr3 135716707 135717056 -91807522 + AluJo SINE Alu 1 342 0 1364 158 61 47 chr3 135718680 135718958 -91805620 - AluJb SINE Alu -30 282 1 288 197 42 28 chr3 135718958 135719029 -91805549 + MIR SINE MIR 81 152 -110 1456 139 45 42 chr3 135719606 135719650 -91804928 - L1MB3 LINE L1 -7 6176 6134 1627 146 68 0 chr3 135719650 135719931 -91804647 - AluJo SINE Alu -12 300 1 1456 139 45 42 chr3 135719931 135720174 -91804404 - L1MB3 LINE L1 -49 6134 5888 828 264 79 45 chr3 135720903 135721068 -91803510 - MLT1G1 LTR MaLR -9 586 428 1133 195 47 5 chr3 135721068 135721283 -91803295 - MER58A DNA MER1_type 0 224 1 828 264 79 45 chr3 135721283 135721400 -91803178 - MLT1G1 LTR MaLR -167 428 316 926 0 18 0 chr3 135721400 135721509 -91803069 + (TTTTA)n Simple_repeat Simple_repeat 2 112 0 2023 94 4 7 chr3 135721512 135721788 -91802790 - AluSc SINE Alu -34 275 1 828 264 79 45 chr3 135721788 135721995 -91802583 - MLT1G1 LTR MaLR -280 315 1 658 228 0 0 chr3 135722799 135722926 -91801652 - FLAM_A SINE Alu -6 127 1 1697 168 27 0 chr3 135722936 135723233 -91801345 - AluJb SINE Alu -7 305 1 284 309 93 10 chr3 135724071 135724168 -91800410 - L2 LINE L2 -8 3305 3201 2009 143 2 111 chr3 135724246 135724382 -91800196 + MLT1B LTR MaLR 1 150 -240 1987 123 59 54 chr3 135724382 135724555 -91800023 - THE1C LTR MaLR 0 375 204 246 32 0 0 chr3 135724555 135724586 -91799992 + (GA)n Simple_repeat Simple_repeat 2 32 0 1987 123 59 54 chr3 135724586 135724785 -91799793 - THE1C LTR MaLR -171 204 1 10054 113 50 13 chr3 135724785 135726309 -91798269 - THE1C-int LTR MaLR 0 1580 1 2037 146 23 47 chr3 135726309 135726693 -91797885 - THE1C LTR MaLR 0 375 1 2009 143 2 111 chr3 135726693 135726791 -91797787 + MLT1B LTR MaLR 148 255 -135 2447 54 0 3 chr3 135726791 135727087 -91797491 + AluY SINE Alu 1 295 -16 2009 143 2 111 chr3 135727087 135727283 -91797295 + MLT1B LTR MaLR 255 387 -3 243 258 117 17 chr3 135727411 135727531 -91797047 + L2 LINE L2 3082 3213 -100 277 323 40 20 chr3 135728066 135728165 -91796413 + MER5B DNA MER1_type 12 112 -66 1178 187 64 91 chr3 135728584 135728959 -91795619 + MLT1A1 LTR MaLR 1 365 0 347 118 0 0 chr3 135729012 135729063 -91795515 + L2 LINE L2 3210 3260 -12 190 316 79 26 chr3 135729228 135729342 -91795236 - L2 LINE L2 -15 3298 3179 450 288 61 8 chr3 135729708 135729840 -91794738 - L2 LINE L2 0 3272 3134 2299 99 0 0 chr3 135729935 135730247 -91794331 + AluSx SINE Alu 1 312 0 515 321 58 11 chr3 135730742 135730932 -91793646 + MIR SINE MIR 34 232 -30 2095 122 0 0 chr3 135730959 135731262 -91793316 - AluSx SINE Alu -9 303 1 562 260 120 16 chr3 135731628 135731820 -91792758 - MIR SINE MIR -6 256 45 356 368 53 7 chr3 135732075 135732227 -91792351 - L2 LINE L2 -5 3267 3109 1594 186 3 0 chr3 135732417 135732771 -91791807 - AluJo SINE Alu 0 367 13 1724 125 0 0 chr3 135733180 135733428 -91791150 + AluSg SINE Alu 39 286 -24 273 57 0 0 chr3 135733431 135733466 -91791112 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 236 320 47 31 chr3 135733911 135734039 -91790539 - L2 LINE L2 -4 3309 3180 2051 120 3 3 chr3 135734762 135735071 -91789507 - AluSg SINE Alu -1 309 1 327 290 80 10 chr3 135736316 135736416 -91788162 + MIR SINE MIR 77 183 -79 206 219 0 0 chr3 135737037 135737078 -91787500 + (TCCA)n Simple_repeat Simple_repeat 3 43 0 268 200 50 0 chr3 135738939 135738999 -91785579 + MIR SINE MIR 186 248 -14 2294 127 18 0 chr3 135739476 135739806 -91784772 + MER1B DNA MER1_type 1 336 -1 183 288 34 34 chr3 135739860 135739919 -91784659 - MER5A DNA MER1_type -58 131 73 2048 141 0 0 chr3 135742845 135743151 -91781427 + AluSx SINE Alu 1 306 -6 734 273 131 37 chr3 135743192 135743544 -91781034 + L2 LINE L2 2928 3312 -1 967 207 0 0 chr3 135744098 135744262 -91780316 + FRAM SINE Alu 1 164 -2 229 283 120 33 chr3 135744627 135744719 -91779859 - MIR3 SINE MIR -44 164 65 2670 176 11 62 chr3 135745811 135746341 -91778237 + MLT1D LTR MaLR 1 503 -2 257 306 77 47 chr3 135746393 135746628 -91777950 + L2 LINE L2 2817 3058 -214 261 119 0 0 chr3 135746630 135746672 -91777906 + (TCCC)n Simple_repeat Simple_repeat 1 42 0 1836 142 27 10 chr3 135746672 135746831 -91777747 - AluJb SINE Alu -12 300 132 1910 115 20 3 chr3 135746831 135747127 -91777451 - AluSx SINE Alu -11 301 1 1836 142 27 10 chr3 135747127 135747262 -91777316 - AluJb SINE Alu -180 132 1 242 300 18 18 chr3 135748190 135748300 -91776278 + GA-rich Low_complexity Low_complexity 4 113 0 425 284 122 78 chr3 135748623 135748746 -91775832 - L1MEd LINE L1 -4909 1210 1094 2221 112 0 0 chr3 135748746 135749059 -91775519 - AluSq SINE Alu 0 313 1 425 284 122 78 chr3 135749059 135749256 -91775322 - L1MEd LINE L1 -5025 1094 876 263 318 66 56 chr3 135749478 135749676 -91774902 - MLT1J LTR MaLR -202 309 110 2034 100 0 0 chr3 135749737 135750006 -91774572 - AluSx SINE Alu -43 269 1 503 263 30 8 chr3 135751823 135751956 -91772622 + MIR SINE MIR 121 256 -6 434 309 99 0 chr3 135752124 135752286 -91772292 + MER91A DNA MER1_type 2 179 -17 307 323 52 0 chr3 135752286 135752382 -91772196 + MER91A DNA MER1_type 94 194 -2 2193 94 7 0 chr3 135752842 135753141 -91771437 - AluSq SINE Alu -12 301 1 761 236 84 25 chr3 135754109 135754346 -91770232 - MIR SINE MIR 0 262 12 2163 107 0 7 chr3 135754541 135754839 -91769739 - AluSx SINE Alu -16 296 1 2143 108 7 0 chr3 135756202 135756497 -91768081 - AluSx SINE Alu -15 297 1 1009 236 44 9 chr3 135756507 135756736 -91767842 - MIR SINE MIR -14 248 12 22 70 0 0 chr3 135757427 135757470 -91767108 + AT_rich Low_complexity Low_complexity 1 43 0 233 194 81 32 chr3 135757584 135757646 -91766932 + Tigger5 DNA MER2_type 2252 2316 -7 * 2342 138 0 14 chr3 135757596 135757958 -91766620 - MER47A DNA MER2_type -9 357 1 1127 221 58 80 chr3 135758234 135758823 -91765755 + L1ME1 LINE L1 1415 1990 -4406 4791 223 71 45 chr3 135758841 135759112 -91765466 + L1ME1 LINE L1 3649 3912 -2303 2108 159 3 0 chr3 135759112 135759451 -91765127 + L1MC1 LINE L1 5988 6327 -6 4791 223 71 45 chr3 135759451 135759925 -91764653 + L1ME1 LINE L1 3912 4372 -1843 1996 138 0 0 chr3 135759925 135760216 -91764362 + AluSx SINE Alu 1 291 -21 4791 223 71 45 chr3 135760216 135760985 -91763593 + L1ME1 LINE L1 4372 5203 -1012 975 113 0 0 chr3 135760986 135761119 -91763459 + AluSq/x SINE Alu 1 133 -179 3378 196 43 57 chr3 135761134 135761367 -91763211 + L1ME1 LINE L1 5172 5407 -828 2134 115 0 0 chr3 135761367 135761663 -91762915 + AluSg SINE Alu 1 296 -14 3378 196 43 57 chr3 135761663 135762502 -91762076 + L1ME1 LINE L1 5407 6230 -5 395 224 37 37 chr3 135764978 135765085 -91759493 + MIR SINE MIR 132 238 -24 2283 104 3 7 chr3 135765218 135765525 -91759053 - AluSx SINE Alu -6 306 1 1835 129 8 0 chr3 135765575 135765830 -91758748 - AluSx SINE Alu -18 294 38 2204 114 0 0 chr3 135765842 135766140 -91758438 - AluSx SINE Alu -14 298 1 301 267 87 70 chr3 135766180 135766352 -91758226 + MIR SINE MIR 17 191 -71 22 35 0 0 chr3 135768182 135768211 -91756367 + AT_rich Low_complexity Low_complexity 1 29 0 2601 228 70 27 chr3 135768695 135769630 -91754948 + L2 LINE L2 2340 3313 0 244 326 127 59 chr3 135769635 135769942 -91754636 + L2 LINE L2 880 1207 -2107 242 329 0 13 chr3 135770237 135770316 -91754262 + L2 LINE L2 3232 3309 -4 1952 127 0 54 chr3 135771570 135771884 -91752694 - AluSx SINE Alu -15 297 1 26 30 0 0 chr3 135772328 135772361 -91752217 + AT_rich Low_complexity Low_complexity 1 33 0 2355 60 3 0 chr3 135772533 135772832 -91751746 - L1PA8 LINE L1 -2 6170 5871 207 0 0 0 chr3 135772839 135772862 -91751716 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1664 193 11 0 chr3 135772863 135773143 -91751435 - AluJo SINE Alu -29 283 1 2265 107 3 0 chr3 135773837 135774136 -91750442 - AluSp SINE Alu -13 300 1 207 298 58 41 chr3 135774250 135774371 -91750207 + L2 LINE L2 3191 3313 0 216 294 28 73 chr3 135774534 135774643 -91749935 - MIR3 SINE MIR -97 111 8 401 286 170 0 chr3 135775183 135775365 -91749213 + MIR SINE MIR 6 218 -44 363 296 223 10 chr3 135775571 135775777 -91748801 - MIR SINE MIR 0 262 13 2372 137 45 41 chr3 135776202 135776692 -91747886 + L1MA9 LINE L1 5821 6312 0 1652 189 56 83 chr3 135776692 135777225 -91747353 + L1MD2 LINE L1 5725 6243 -116 868 145 0 0 chr3 135777328 135777452 -91747126 - FRAM SINE Alu -33 143 20 2244 93 3 3 chr3 135777481 135777795 -91746783 - AluSx SINE Alu 0 314 1 3976 165 37 19 chr3 135777822 135778634 -91745944 + L1MB7 LINE L1 5327 6153 -31 9207 127 4 4 chr3 135778735 135780264 -91744314 - L1P LINE L1 -1465 4681 3153 297 0 0 0 chr3 135781920 135781953 -91742625 + (CA)n Simple_repeat Simple_repeat 2 34 0 * 315 0 0 0 chr3 135781952 135781987 -91742591 + (GA)n Simple_repeat Simple_repeat 2 36 0 1161 170 28 46 chr3 135782297 135782580 -91741998 - MLT1B LTR MaLR 0 390 113 222 171 0 0 chr3 135782654 135782695 -91741883 + CT-rich Low_complexity Low_complexity 2 42 0 5230 122 9 33 chr3 135783133 135784124 -91740454 - L1PA13 LINE L1 -12 6151 5202 575 143 98 0 chr3 135784124 135784236 -91740342 - MLT1B LTR MaLR -265 125 3 549 30 0 0 chr3 135784390 135784457 -91740121 + (CA)n Simple_repeat Simple_repeat 2 68 0 2200 77 35 14 chr3 135784463 135784748 -91739830 - AluY SINE Alu -20 291 1 1491 253 96 32 chr3 135784763 135785439 -91739139 - L1ME3A LINE L1 -38 6132 5414 * 3087 185 62 10 chr3 135785436 135786222 -91738356 - L1MB8 LINE L1 -187 5991 5158 2330 93 3 3 chr3 135786222 135786523 -91738055 - AluSg SINE Alu -9 301 1 3087 185 62 10 chr3 135786523 135786588 -91737990 - L1MB8 LINE L1 -1020 5158 5098 21 0 0 0 chr3 135786709 135786730 -91737848 + AT_rich Low_complexity Low_complexity 1 21 0 574 272 82 9 chr3 135786848 135787080 -91737498 - L1ME3A LINE L1 0 6170 5922 1892 152 15 0 chr3 135787180 135787302 -91737276 - L1PB4 LINE L1 -130 6026 5905 531 294 12 28 chr3 135787302 135787550 -91737028 - L1ME3A LINE L1 -276 5902 5659 357 244 50 8 chr3 135787567 135787686 -91736892 - L1ME3A LINE L1 -878 5268 5145 1258 161 0 35 chr3 135787689 135787919 -91736659 - AluJb SINE Alu -14 298 77 862 245 114 53 chr3 135787929 135788307 -91736271 - L1ME3A LINE L1 -1004 5142 4685 2298 103 0 0 chr3 135788307 135788607 -91735971 - AluSq SINE Alu -13 300 1 862 245 114 53 chr3 135788607 135788792 -91735786 - L1ME3A LINE L1 -1461 4685 4513 913 181 62 5 chr3 135788873 135789393 -91735185 - MLT2F LTR ERVL -38 625 1 353 275 72 81 chr3 135789527 135789763 -91734815 - HAL1b LINE L1 -1073 275 42 1494 278 44 6 chr3 135791398 135792012 -91732566 + L2 LINE L2 2666 3304 -9 5272 126 35 13 chr3 135792125 135792619 -91731959 - L1M2 LINE L1 -743 5403 4921 2175 115 3 0 chr3 135792619 135792907 -91731671 - AluSx SINE Alu -7 305 17 5272 126 35 13 chr3 135792907 135793503 -91731075 - L1M2 LINE L1 -1225 4921 4349 960 211 88 4 chr3 135793505 135793732 -91730846 - L1MC/D LINE L1 -621 5738 5493 840 108 0 34 chr3 135793737 135793885 -91730693 - L1PA13 LINE L1 0 6163 6021 245 295 87 87 chr3 135794036 135794209 -91730369 - L2 LINE L2 -16 3297 3125 938 197 11 16 chr3 135794238 135794421 -91730157 - MER5A DNA MER1_type 0 189 8 192 360 70 0 chr3 135794432 135794546 -91730032 - L2 LINE L2 -258 3014 2893 718 100 0 0 chr3 135795174 135795274 -91729304 + HY3 scRNA scRNA 1 100 -1 600 181 174 26 chr3 135796644 135796799 -91727779 - MER5B DNA MER1_type 0 178 1 462 154 10 19 chr3 135796813 135796917 -91727661 + CT-rich Low_complexity Low_complexity 1 103 0 2217 119 3 0 chr3 135797297 135797591 -91726987 - AluSx SINE Alu -17 295 1 1602 209 32 49 chr3 135798652 135799122 -91725456 + LTR40c LTR ERVL 4 465 0 984 102 0 0 chr3 135799513 135799640 -91724938 + AluSq/x SINE Alu 1 127 -185 28 29 0 0 chr3 135799729 135799764 -91724814 + AT_rich Low_complexity Low_complexity 1 35 0 2281 187 21 70 chr3 135799847 135800461 -91724117 - L1ME1 LINE L1 -5 6161 5578 826 191 43 0 chr3 135800462 135800603 -91723975 + AluJo SINE Alu 1 147 -165 1104 170 105 32 chr3 135800615 135800892 -91723686 - L1ME1 LINE L1 -577 5589 5293 3180 150 18 11 chr3 135800893 135801076 -91723502 - MER44D DNA MER2_type -1882 605 425 1938 121 54 46 chr3 135801076 135801448 -91723130 - THE1C LTR MaLR 0 375 1 3180 150 18 11 chr3 135801448 135801810 -91722768 - MER44D DNA MER2_type -2062 425 1 2296 104 3 13 chr3 135801826 135802134 -91722444 - AluSq SINE Alu -8 305 1 4796 204 26 16 chr3 135802134 135803100 -91721478 - L1ME1 LINE L1 -902 5244 4262 1633 192 3 23 chr3 135803100 135803402 -91721176 - AluJo SINE Alu -16 296 1 4796 204 26 16 chr3 135803402 135803687 -91720891 - L1ME1 LINE L1 -1884 4262 3981 1876 75 111 23 chr3 135803689 135803995 -91720583 - L1PA10 LINE L1 0 6168 5836 186 43 0 0 chr3 135804095 135804118 -91720460 + (A)n Simple_repeat Simple_repeat 1 23 0 747 276 55 32 chr3 135804923 135805432 -91719146 - L1MC5 LINE L1 -816 6992 6455 330 138 0 0 chr3 135805447 135805505 -91719073 + (TATG)n Simple_repeat Simple_repeat 4 61 0 407 259 226 29 chr3 135805579 135805818 -91718760 - L1MC4a LINE L1 -1480 6328 6043 2229 123 0 3 chr3 135805848 135806149 -91718429 - AluSx SINE Alu -12 300 1 542 194 10 0 chr3 135806218 135806321 -91718257 + FRAM SINE Alu 67 170 -6 25 51 0 0 chr3 135806321 135806360 -91718218 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr3 135806728 135806749 -91717829 + AT_rich Low_complexity Low_complexity 1 21 0 488 278 16 77 chr3 135806832 135807026 -91717552 + L2 LINE L2 3132 3313 0 1353 269 75 24 chr3 135807309 135807948 -91716630 - L1MEc LINE L1 -4558 1838 1167 * 18998 166 20 96 chr3 135807934 135809935 -91714643 - L1MA1 LINE L1 0 7740 5589 2687 85 10 3 chr3 135809935 135810325 -91714253 - L1PA13 LINE L1 -2 6161 5769 4279 68 2 17 chr3 135810325 135810897 -91713681 - L1PA11 LINE L1 -1 6173 5608 18998 166 20 96 chr3 135810897 135813839 -91710739 - L1MA1 LINE L1 -2150 5590 2578 2625 43 0 0 chr3 135813839 135814142 -91710436 + AluY SINE Alu 1 303 -8 18998 166 20 96 chr3 135814142 135815611 -91708967 - L1MA1 LINE L1 -5162 2578 999 961 243 34 14 chr3 135815610 135815906 -91708672 - L1M4 LINE L1 -2156 3990 3689 * 834 166 0 0 chr3 135815911 135816062 -91708516 + CT-rich Low_complexity Low_complexity 1 151 0 369 233 0 13 chr3 135816063 135816172 -91708406 - L1M4 LINE L1 -2473 3673 3567 955 242 177 34 chr3 135816178 135816587 -91707991 - MLT1F1 LTR MaLR -105 462 1 2711 199 56 23 chr3 135816588 135817155 -91707423 - L1M4 LINE L1 -2786 3360 2760 2185 104 31 0 chr3 135817155 135817442 -91707136 - AluSx SINE Alu -16 296 1 2711 199 56 23 chr3 135817442 135817626 -91706952 - L1M4 LINE L1 -3386 2760 2584 22 0 0 0 chr3 135818175 135818197 -91706381 + AT_rich Low_complexity Low_complexity 1 22 0 1202 231 40 79 chr3 135818788 135819233 -91705345 - L2 LINE L2 -17 3296 2869 222 192 0 0 chr3 135820405 135820457 -91704121 + CT-rich Low_complexity Low_complexity 1 52 0 29 60 0 0 chr3 135821067 135821117 -91703461 + AT_rich Low_complexity Low_complexity 1 50 0 220 276 69 52 chr3 135822490 135822606 -91701972 - MIR SINE MIR -58 204 87 1180 178 28 5 chr3 135822802 135823016 -91701562 + MER20 DNA MER1_type 1 219 0 2698 264 107 25 chr3 135823829 135824862 -91699716 + L1MEc LINE L1 37 1153 -5243 2298 120 0 0 chr3 135824954 135825262 -91699316 - AluSx SINE Alu -3 309 2 205 320 23 78 chr3 135825267 135825395 -91699183 + L2 LINE L2 3132 3252 -61 568 162 45 18 chr3 135825432 135825543 -91699035 + L1 LINE L1 16 129 -7436 6132 187 27 31 chr3 135825543 135826545 -91698033 + L1 LINE L1 338 1368 -6197 275 61 0 0 chr3 135826545 135826578 -91698000 + AluSq/x SINE Alu 91 123 -180 6132 187 27 31 chr3 135826578 135826738 -91697840 + L1 LINE L1 1368 1527 -6038 1562 152 22 4 chr3 135826732 135827002 -91697576 + L1 LINE L1 5461 5735 -1830 * 672 97 177 0 chr3 135827001 135827114 -91697464 + L1P4 LINE L1 5644 5776 -392 * 8836 163 28 5 chr3 135827138 135828816 -91695762 + L1PA15-16 LINE L1 2024 3742 -3107 1959 127 19 45 chr3 135829846 135829973 -91694605 + AluSx SINE Alu 1 130 -182 2359 96 0 0 chr3 135829973 135830274 -91694304 + AluSg SINE Alu 1 301 -9 2296 102 0 0 chr3 135830276 135830569 -91694009 + AluSx SINE Alu 1 293 -19 1959 127 19 45 chr3 135830569 135830752 -91693826 + AluSx SINE Alu 131 306 -6 1063 204 38 0 chr3 135830816 135831027 -91693551 + AluJb SINE Alu 1 219 -93 5248 89 41 0 chr3 135831127 135831856 -91692722 + L1PA14 LINE L1 5401 6159 -2 2284 89 0 0 chr3 135832329 135832639 -91691939 + AluSc SINE Alu 1 310 0 296 259 52 78 chr3 135832960 135833230 -91691348 - L1MC4a LINE L1 -1849 5959 5697 2154 134 0 6 chr3 135833347 135833692 -91690886 + AluSx SINE Alu 1 343 0 376 304 37 32 chr3 135833721 135833938 -91690640 - L1MC4a LINE L1 -2336 5472 5255 695 54 89 36 chr3 135834662 135834774 -91689804 + L1MB3 LINE L1 6065 6182 -1 241 170 0 19 chr3 135834928 135834981 -91689597 + MIR SINE MIR 101 152 -110 1893 101 34 37 chr3 135835101 135835270 -91689308 - AluSx SINE Alu 0 312 143 1997 136 0 7 chr3 135835270 135835565 -91689013 - AluSx SINE Alu 0 312 20 1893 101 34 37 chr3 135835565 135835692 -91688886 - AluSx SINE Alu -169 143 17 565 154 90 22 chr3 135835742 135835897 -91688681 - L1MB8 LINE L1 -173 6011 5879 593 200 29 0 chr3 135836016 135836156 -91688422 - L1ME4a LINE L1 -4 6117 5974 388 209 121 17 chr3 135836316 135836563 -91688015 - L1MC4a LINE L1 -352 5810 5605 577 289 63 25 chr3 135836567 135836851 -91687727 - L1ME4a LINE L1 -223 5898 5604 355 221 123 41 chr3 135836872 135836994 -91687584 - L1ME4a LINE L1 -1 6120 5989 279 241 72 0 chr3 135837101 135837184 -91687394 - L1ME4a LINE L1 -298 5823 5735 1121 180 60 66 chr3 135837207 135837634 -91686944 - MER76 LTR ERV -199 489 1 222 211 0 42 chr3 135838335 135838347 -91686231 + (TTA)n Simple_repeat Simple_repeat 3 14 -56 1688 169 0 18 chr3 135838347 135838626 -91685952 + AluJb SINE Alu 1 274 -38 222 211 0 42 chr3 135838626 135838639 -91685939 + (TTA)n Simple_repeat Simple_repeat 14 26 -44 203 0 0 36 chr3 135838639 135838667 -91685911 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 222 211 0 42 chr3 135838667 135838711 -91685867 + (TTA)n Simple_repeat Simple_repeat 26 70 0 227 254 16 16 chr3 135839128 135839191 -91685387 - MER77 LTR ERV1 -54 551 489 271 284 75 67 chr3 135839210 135839492 -91685086 + L1MC4a LINE L1 5623 5906 -1902 640 97 0 0 chr3 135839694 135839787 -91684791 + L1MB3 LINE L1 6079 6171 -12 26 64 0 0 chr3 135839787 135839834 -91684744 + AT_rich Low_complexity Low_complexity 1 47 0 289 257 162 40 chr3 135840205 135840353 -91684225 - MIR3 SINE MIR 0 208 43 261 0 0 0 chr3 135840372 135840401 -91684177 + (A)n Simple_repeat Simple_repeat 1 29 0 579 171 171 0 chr3 135840611 135840734 -91683844 + HsTC2 DNA Tc2 1 144 -1754 767 251 91 56 chr3 135840750 135841022 -91683556 + HsTC2 DNA Tc2 1231 1492 -406 2156 76 50 20 chr3 135841022 135841325 -91683253 + AluSx SINE Alu 1 312 0 767 251 91 56 chr3 135841325 135841374 -91683204 + HsTC2 DNA Tc2 1492 1538 -360 2161 80 59 3 chr3 135841374 135841662 -91682916 + AluY SINE Alu 1 304 -7 767 251 91 56 chr3 135841662 135841714 -91682864 + HsTC2 DNA Tc2 1538 1794 -104 243 294 57 45 chr3 135843477 135843654 -91680924 - L1 LINE L1 -2599 3547 3369 563 268 151 21 chr3 135843662 135843851 -91680727 - L1 LINE L1 -2798 3348 3185 2240 71 9 58 chr3 135843851 135844176 -91680402 - AluSg SINE Alu -1 309 1 563 268 151 21 chr3 135844176 135844370 -91680208 - L1 LINE L1 -2961 3185 2915 2528 191 38 64 chr3 135844851 135845478 -91679100 - LTR9 LTR ERV1 0 612 2 333 298 62 72 chr3 135845493 135846079 -91678499 - HAL1b LINE L1 -673 1662 217 1815 140 8 57 chr3 135846089 135846452 -91678126 - MER4A LTR ERV1 0 664 261 504 144 89 0 chr3 135846452 135846542 -91678036 - MER4A LTR ERV1 -566 98 1 1952 177 113 27 chr3 135846772 135847223 -91677355 + LTR2B LTR ERV1 1 490 0 2583 181 49 32 chr3 135847223 135847881 -91676697 + Harlequin LTR ERV1 1 620 -6276 1658 87 53 1 chr3 135847881 135848134 -91676444 - LTR21A LTR ERV1 -207 298 1 2339 100 3 31 chr3 135848359 135848680 -91675898 + AluSp SINE Alu 1 312 -1 399 145 14 0 chr3 135848895 135848964 -91675614 + L1PA13 LINE L1 2 71 -6716 * 19331 180 37 13 chr3 135848959 135851912 -91672666 + L1PA13 LINE L1 637 3520 -3294 1806 142 12 0 chr3 135851912 135852166 -91672412 + AluSx SINE Alu 1 257 -55 19331 180 37 13 chr3 135852166 135855371 -91669207 + L1PA13 LINE L1 3520 6813 -1 10176 174 156 42 chr3 135855519 135856527 -91668051 - L1PA12 LINE L1 -1552 6032 5140 488 221 0 0 chr3 135856527 135856613 -91667965 - AluS SINE Alu -226 87 2 10176 174 156 42 chr3 135856613 135856936 -91667642 - L1PA12 LINE L1 -2444 5140 4855 2207 118 0 0 chr3 135856936 135857225 -91667353 - AluSg SINE Alu -21 289 1 10176 174 156 42 chr3 135857225 135858204 -91666374 - L1PA12 LINE L1 -2729 4855 3989 1572 118 0 0 chr3 135858204 135858415 -91666163 + AluSg/x SINE Alu 83 293 -17 10176 174 156 42 chr3 135858415 135858927 -91665651 - L1PA12 LINE L1 -3595 3989 2758 2124 130 0 37 chr3 135858927 135859249 -91665329 - AluSx SINE Alu -2 310 1 921 147 96 0 chr3 135859251 135859408 -91665170 - AluSg/x SINE Alu -3 309 138 6398 99 220 108 chr3 135859408 135860924 -91663654 - pTR5 LTR ERV1 -6 2432 747 1226 110 0 0 chr3 135860924 135861078 -91663500 - AluSq SINE Alu -159 154 1 12691 152 21 9 chr3 135861080 135863553 -91661025 - L1PA12 LINE L1 -4811 2770 1 249 317 74 48 chr3 135863591 135863821 -91660757 - L2 LINE L2 -558 2756 2521 227 252 88 34 chr3 135864733 135864880 -91659698 - L1ME4a LINE L1 0 6121 5967 213 195 0 0 chr3 135865309 135865350 -91659228 + (CCCCG)n Simple_repeat Simple_repeat 1 41 0 880 280 112 27 chr3 135867577 135868066 -91656512 + L2 LINE L2 2698 3309 -4 1450 213 27 16 chr3 135868273 135868644 -91655934 - L1ME2 LINE L1 -93 6071 5697 5045 140 52 7 chr3 135871171 135872527 -91652051 - L1PA16 LINE L1 -2 6164 4750 2850 238 23 53 chr3 135872527 135873630 -91650948 + L1 LINE L1 2923 3992 -2154 1316 180 0 9 chr3 135873853 135874075 -91650503 - AluJb SINE Alu -92 220 1 468 249 46 55 chr3 135874173 135874462 -91650116 - L1MC4a LINE L1 -298 5823 5594 1984 220 60 8 chr3 135876800 135877299 -91647279 + L1MEc LINE L1 228 752 -5644 2818 231 39 48 chr3 135877324 135877868 -91646710 + L1MEc LINE L1 2440 2988 -3227 1651 179 35 18 chr3 135877868 135878153 -91646425 + AluJo SINE Alu 1 290 -22 2818 231 39 48 chr3 135878153 135878269 -91646309 + L1MEc LINE L1 2988 3104 -3111 1713 164 0 28 chr3 135878269 135878555 -91646023 + AluJo SINE Alu 5 282 -30 2818 231 39 48 chr3 135878555 135879028 -91645550 + L1MEc LINE L1 3104 3548 -2667 364 267 9 0 chr3 135879016 135879121 -91645457 + L1MEc LINE L1 4011 4116 -2099 * 2304 98 0 0 chr3 135879141 135879436 -91645142 - AluSg SINE Alu -15 295 1 2255 104 3 3 chr3 135879436 135879742 -91644836 - AluSx SINE Alu -5 307 1 2233 113 0 7 chr3 135879978 135880278 -91644300 - AluSx SINE Alu -14 298 1 966 169 16 48 chr3 135880707 135880896 -91643682 + MER5A DNA MER1_type 7 189 0 349 193 0 0 chr3 135882108 135882165 -91642413 - L2 LINE L2 -10 3262 3206 260 275 101 18 chr3 135882146 135882255 -91642323 + L2 LINE L2 3154 3271 -1 * 372 336 78 14 chr3 135882472 135882689 -91641889 - MIR SINE MIR -6 256 26 4196 122 22 5 chr3 135882762 135883395 -91641183 - LTR9B LTR ERV1 0 644 1 4119 194 5 17 chr3 135884733 135885661 -91638917 + L1 LINE L1 3814 4730 -1416 206 279 139 13 chr3 135887850 135887929 -91636649 + MIR SINE MIR 32 120 -88 490 328 6 17 chr3 135887996 135888176 -91636402 - MER5B DNA MER1_type 0 178 1 2148 120 0 7 chr3 135888832 135889131 -91635447 - AluSg SINE Alu -13 297 1 198 312 26 26 chr3 135889218 135889295 -91635283 + MIR3 SINE MIR 125 201 -7 2381 92 7 0 chr3 135889493 135889799 -91634779 + AluSc SINE Alu 1 308 -1 2356 88 3 0 chr3 135889808 135890103 -91634475 + AluSp SINE Alu 1 296 -17 2181 122 61 0 chr3 135890202 135890545 -91634033 - THE1B LTR MaLR 0 364 1 23 33 0 0 chr3 135891218 135891248 -91633330 + AT_rich Low_complexity Low_complexity 1 30 0 24 0 0 0 chr3 135892254 135892278 -91632300 + AT_rich Low_complexity Low_complexity 1 24 0 2335 105 0 0 chr3 135892615 135892919 -91631659 - AluSx SINE Alu -8 304 1 2678 29 0 10 chr3 135893696 135894006 -91630572 - AluY SINE Alu -4 307 1 1792 167 7 4 chr3 135894188 135894494 -91630084 - AluSx SINE Alu 0 312 6 30 45 0 0 chr3 135896411 135896455 -91628123 + AT_rich Low_complexity Low_complexity 1 44 0 211 77 135 0 chr3 135897192 135897244 -91627334 + (TATAG)n Simple_repeat Simple_repeat 2 60 0 1669 153 0 8 chr3 135899207 135899455 -91625123 - AluJo SINE Alu -19 293 48 939 60 0 0 chr3 135899455 135899571 -91625007 + AluY SINE Alu 193 308 -3 349 152 0 61 chr3 135899573 135899639 -91624939 - AluJo SINE Alu -240 62 1 2361 52 0 14 chr3 135900675 135900992 -91623586 + AluY SINE Alu 1 313 0 196 294 118 15 chr3 135902490 135902558 -91622020 - L2 LINE L2 0 3272 3198 195 130 29 14 chr3 135903279 135903348 -91621230 + (TA)n Simple_repeat Simple_repeat 1 70 0 436 258 37 57 chr3 135903618 135903953 -91620625 - L1MC/D LINE L1 -703 5687 5511 301 311 198 40 chr3 135903997 135904286 -91620292 - L1MC/D LINE L1 -3404 2978 2614 2195 117 0 13 chr3 135904286 135904595 -91619983 - AluSx SINE Alu -7 305 1 301 311 198 40 chr3 135904595 135904684 -91619894 - L1MC/D LINE L1 -3768 2614 2540 344 262 126 0 chr3 135904693 135904796 -91619782 + MIR SINE MIR 57 172 -90 717 272 183 55 chr3 135904799 135905435 -91619143 - L2 LINE L2 -7 3306 2585 283 312 109 30 chr3 135905888 135906194 -91618384 - HAL1b LINE L1 -719 865 547 309 312 67 34 chr3 135906220 135906303 -91618275 - L1MEd LINE L1 -4910 1209 1130 2315 94 10 13 chr3 135906303 135906611 -91617967 - AluSg SINE Alu -3 307 1 309 312 67 34 chr3 135906611 135906825 -91617753 - L1MEd LINE L1 -4989 1130 902 1740 131 10 76 chr3 135907046 135907360 -91617218 + AluSx SINE Alu 1 293 -19 219 114 0 0 chr3 135907680 135907715 -91616863 + (AATAG)n Simple_repeat Simple_repeat 2 36 0 851 216 19 14 chr3 135907949 135908157 -91616421 + MLT1A1 LTR MaLR 1 209 -165 * 5357 120 157 34 chr3 135908133 135909255 -91615323 + MER52C LTR ERV1 19 1278 0 967 166 28 6 chr3 135909255 135909436 -91615142 + MLT1A1 LTR MaLR 181 365 0 2036 120 0 29 chr3 135910201 135910531 -91614047 + AluSx SINE Alu 1 312 0 283 318 131 19 chr3 135912028 135912135 -91612443 + MIR3 SINE MIR 69 187 -21 2139 127 3 16 chr3 135912424 135912738 -91611840 + AluSx SINE Alu 1 310 -2 474 308 121 15 chr3 135912823 135913021 -91611557 + MIR SINE MIR 32 250 -12 422 305 226 37 chr3 135913143 135913520 -91611058 + L2 LINE L2 2513 2960 -354 453 176 0 118 chr3 135913604 135913706 -91610872 + L2 LINE L2 3182 3271 -1 2863 16 0 0 chr3 135913830 135914144 -91610434 - AluYb8 SINE Alu -4 314 1 271 232 179 21 chr3 135914548 135914643 -91609935 - L2 LINE L2 -239 3033 2924 319 239 65 110 chr3 135914757 135914912 -91609666 - L2 LINE L2 -467 2847 2700 314 288 105 99 chr3 135915117 135915784 -91608794 + L1M2 LINE L1 439 1109 -5740 1293 179 29 0 chr3 135917221 135917467 -91607111 + AluJb SINE Alu 1 253 -59 193 279 190 0 chr3 135918074 135918153 -91606425 + L2 LINE L2 3192 3285 -28 427 292 49 21 chr3 135918298 135918442 -91606136 - MIR SINE MIR -113 149 2 222 287 103 23 chr3 135919554 135919641 -91604937 + L2 LINE L2 3161 3254 -18 438 269 104 80 chr3 135919758 135920007 -91604571 + MIR SINE MIR 8 262 0 228 231 19 0 chr3 135921087 135921139 -91603439 - L2 LINE L2 -4 3309 3257 586 295 27 16 chr3 135921167 135921350 -91603228 - MIR SINE MIR 0 262 78 4954 146 10 30 chr3 135921462 135922350 -91602228 + L1MB8 LINE L1 5308 6177 -1 226 264 125 42 chr3 135923766 135923797 -91600781 - HAL1b LINE L1 0 1348 1318 701 203 85 89 chr3 135923797 135924068 -91600510 - L1ME4a LINE L1 -56 6065 1193 2379 80 0 16 chr3 135924642 135924954 -91599624 - AluSq SINE Alu -6 307 1 314 359 66 24 chr3 135925010 135925177 -91599401 - L2 LINE L2 0 3272 3099 402 221 207 31 chr3 135925178 135925400 -91599178 + L1ME4a LINE L1 5831 6091 -30 2436 86 0 0 chr3 135925560 135925863 -91598715 - AluSc SINE Alu -6 303 1 2361 144 60 7 chr3 135926307 135926336 -91598242 - L1P LINE L1 -1095 5051 5025 6359 91 40 0 chr3 135926336 135927458 -91597120 - L1PA14 LINE L1 -2 6159 4992 952 37 0 0 chr3 135927465 135927573 -91597005 - L1PA4 LINE L1 -8 6147 6040 2361 144 60 7 chr3 135927573 135927985 -91596593 - L1P LINE L1 -1126 5020 4578 24 39 0 0 chr3 135928088 135928114 -91596464 + GC_rich Low_complexity Low_complexity 1 26 0 262 94 24 47 chr3 135928114 135928199 -91596379 + (CGGGG)n Simple_repeat Simple_repeat 1 83 0 37 0 0 0 chr3 135928199 135928236 -91596342 + GC_rich Low_complexity Low_complexity 1 37 0 181 83 0 83 chr3 135928236 135928308 -91596270 + (CCCCCG)n Simple_repeat Simple_repeat 4 69 0 413 271 60 108 chr3 135928570 135929070 -91595508 - L2 LINE L2 -50 3263 2752 1460 124 58 4 chr3 135929155 135929381 -91595197 + AluSx SINE Alu 61 298 -14 242 258 118 11 chr3 135929639 135929732 -91594846 - L2 LINE L2 -8 3264 3162 616 256 100 0 chr3 135929950 135930130 -91594448 + MIR SINE MIR 31 228 -34 362 192 182 0 chr3 135930146 135930245 -91594333 + MIR SINE MIR 132 248 -14 1343 119 0 0 chr3 135930389 135930566 -91594012 + AluY SINE Alu 1 177 -134 297 288 36 18 chr3 135930618 135930729 -91593849 + L2 LINE L2 2562 2674 -640 1106 90 0 0 chr3 135930746 135930890 -91593688 - AluSg/x SINE Alu -4 308 165 2381 101 0 0 chr3 135931294 135931601 -91592977 + AluSg SINE Alu 1 307 -3 602 191 57 32 chr3 135932629 135932786 -91591792 + MIR SINE MIR 37 197 -65 1040 138 138 5 chr3 135932790 135932979 -91591599 - AluJb SINE Alu -13 299 86 291 309 148 8 chr3 135933073 135933229 -91591349 - MIR SINE MIR -66 142 9 2497 151 3 3 chr3 135933920 135934285 -91590293 - MLT1A1 LTR MaLR 0 365 1 1520 147 184 43 chr3 135934547 135934856 -91589722 + MSTC LTR MaLR 1 374 -54 2236 109 3 0 chr3 135934856 135935150 -91589428 + AluSx SINE Alu 1 295 -17 1520 147 184 43 chr3 135935150 135935215 -91589363 + MSTC LTR MaLR 374 428 0 258 185 77 0 chr3 135936538 135936603 -91587975 - MER91C DNA MER1_type -32 108 39 3275 278 106 8 chr3 135936803 135937874 -91586704 + L2 LINE L2 39 1214 -2100 2118 114 3 13 chr3 135937874 135938201 -91586377 - AluSq SINE Alu 0 313 1 2139 128 3 3 chr3 135938320 135938624 -91585954 + AluSx SINE Alu 1 304 -8 23 68 0 0 chr3 135938662 135938706 -91585872 + AT_rich Low_complexity Low_complexity 1 44 0 408 289 41 0 chr3 135939132 135939253 -91585325 + MIR SINE MIR 81 206 -56 1646 169 3 14 chr3 135939562 135939876 -91584702 - AluSx SINE Alu 0 311 1 226 264 125 42 chr3 135942509 135942540 -91582038 - HAL1b LINE L1 0 1348 1318 701 203 85 89 chr3 135942540 135942811 -91581767 - L1ME4a LINE L1 -56 6065 1193 2379 80 0 16 chr3 135943384 135943696 -91580882 - AluSq SINE Alu -6 307 1 314 359 66 24 chr3 135943752 135943919 -91580659 - L2 LINE L2 0 3272 3099 402 221 207 31 chr3 135943920 135944142 -91580436 + L1ME4a LINE L1 5831 6091 -30 2445 97 0 0 chr3 135944304 135944612 -91579966 - AluSc SINE Alu 0 309 2 273 29 0 0 chr3 135944612 135944646 -91579932 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2148 119 0 3 chr3 135944646 135944932 -91579646 - AluSq SINE Alu -28 285 1 2165 125 3 3 chr3 135945051 135945355 -91579223 + AluSx SINE Alu 1 304 -8 23 68 0 0 chr3 135945393 135945437 -91579141 + AT_rich Low_complexity Low_complexity 1 44 0 408 289 41 0 chr3 135945863 135945984 -91578594 + MIR SINE MIR 81 206 -56 1881 145 0 7 chr3 135946290 135946603 -91577975 - AluSx SINE Alu 0 311 1 342 0 0 0 chr3 135948356 135948394 -91576184 + (TG)n Simple_repeat Simple_repeat 1 38 0 253 349 18 46 chr3 135949138 135949247 -91575331 - MIR SINE MIR -108 154 49 889 246 47 0 chr3 135949526 135949741 -91574837 + MIR SINE MIR 28 252 -10 1033 179 28 179 chr3 135949749 135950185 -91574393 - MLT2D LTR ERVL -5 409 40 289 316 13 0 chr3 135951148 135951224 -91573354 + LTR67 LTR ERVL 114 190 -367 235 148 33 49 chr3 135951483 135951544 -91573034 + MLT2E LTR ERVL 517 576 -52 * 318 247 24 12 chr3 135951514 135951599 -91572979 + LTR33A LTR ERVL 438 523 0 185 65 32 0 chr3 135952268 135952299 -91572279 + (CAA)n Simple_repeat Simple_repeat 2 33 0 378 277 155 40 chr3 135952388 135952536 -91572042 + MIR3 SINE MIR 2 166 -42 451 281 179 0 chr3 135953603 135953799 -91570779 - MIR SINE MIR -12 250 20 512 303 48 10 chr3 135954114 135954322 -91570256 - MIR SINE MIR 0 262 47 337 278 37 0 chr3 135954559 135954667 -91569911 - MIR3 SINE MIR -14 194 83 399 265 129 66 chr3 135954812 135955114 -91569464 + L1ME4a LINE L1 5798 6118 -3 7272 183 62 13 chr3 135955138 135957627 -91566951 - L1MB8 LINE L1 -6 6172 3558 522 249 17 0 chr3 135957632 135957809 -91566769 - L1MB8 LINE L1 -2944 3202 3023 43860 33 22 1 chr3 135957810 135963833 -91560745 - L1PA2 LINE L1 -4 6151 3 1136 171 41 30 chr3 135963833 135964102 -91560476 - L1MB8 LINE L1 -3103 3043 2772 849 234 23 35 chr3 135964081 135964275 -91560303 - L1M4 LINE L1 -1398 4748 4556 * 2826 145 21 9 chr3 135964275 135964696 -91559882 - MSTB LTR MaLR 0 426 1 849 234 23 35 chr3 135964696 135964758 -91559820 - L1M4 LINE L1 -1590 4556 4495 559 214 48 41 chr3 135964810 135964955 -91559623 - L2 LINE L2 0 3313 3168 1258 173 28 35 chr3 135964977 135965231 -91559347 + L1ME3A LINE L1 5899 6150 -20 6571 253 159 22 chr3 135965231 135965335 -91559243 - L2 LINE L2 -148 3165 3077 2003 136 4 0 chr3 135965335 135965658 -91558920 - AluSx SINE Alu 0 326 3 6571 253 159 22 chr3 135965658 135967249 -91557329 - L2 LINE L2 -236 3077 1705 2251 102 7 7 chr3 135967249 135967573 -91557005 + AluSp SINE Alu 1 313 0 6571 253 159 22 chr3 135967573 135968412 -91556166 - L2 LINE L2 -1608 1705 285 463 232 5 116 chr3 135968563 135968770 -91555808 + L2 LINE L2 3125 3308 -5 403 294 88 48 chr3 135969326 135969554 -91555024 + L1MC/D LINE L1 5380 5616 -2192 1952 195 8 19 chr3 135970707 135971076 -91553502 + MLT1A1 LTR MaLR 1 365 0 198 237 17 0 chr3 135972820 135972879 -91551699 - MIR SINE MIR -76 132 73 27 49 0 0 chr3 135973245 135973286 -91551292 + AT_rich Low_complexity Low_complexity 1 41 0 482 260 48 7 chr3 135974367 135974513 -91550065 + MIR SINE MIR 17 168 -94 3874 160 80 13 chr3 135974530 135975297 -91549281 + L1MB7 LINE L1 5366 6183 -1 1774 246 64 11 chr3 135975319 135975774 -91548804 + LTR16C LTR ERVL 3 481 -10 302 272 76 0 chr3 135976470 135976562 -91548016 - L2 LINE L2 -21 3251 3153 633 255 16 21 chr3 135977312 135977493 -91547085 - MER5B DNA MER1_type 0 189 2 1785 165 39 0 chr3 135978613 135978898 -91545680 - AluJo SINE Alu -16 296 1 324 162 68 0 chr3 135979324 135979398 -91545180 + MIR SINE MIR 156 234 -28 186 161 8 68 chr3 135979433 135979551 -91545027 + (TTA)n Simple_repeat Simple_repeat 2 112 0 836 10 0 0 chr3 135980881 135981020 -91543558 + AluYa5/8 SINE Alu 215 353 0 390 326 36 0 chr3 135981046 135981184 -91543394 + MIR SINE MIR 48 190 -72 21 0 0 0 chr3 135981610 135981631 -91542947 + AT_rich Low_complexity Low_complexity 1 21 0 2086 122 39 0 chr3 135983826 135984138 -91540440 - MER46B DNA MER2_type 0 236 38 294 258 30 18 chr3 135985676 135985843 -91538735 + (TG)n Simple_repeat Simple_repeat 2 170 0 471 253 43 29 chr3 135987332 135987522 -91537056 + MIR SINE MIR 14 206 -56 312 70 0 0 chr3 135989040 135989083 -91535495 + (CA)n Simple_repeat Simple_repeat 2 44 0 1577 180 21 58 chr3 135989252 135989629 -91534949 + MLT1A1 LTR MaLR 3 365 0 381 162 0 0 chr3 135989817 135989885 -91534693 + (CA)n Simple_repeat Simple_repeat 2 69 0 211 125 0 75 chr3 135990301 135990341 -91534237 - MIR SINE MIR -6 256 220 210 71 0 0 chr3 135990786 135990814 -91533764 + (TCTCCC)n Simple_repeat Simple_repeat 2 29 0 9858 45 119 8 chr3 135990814 135992062 -91532516 + SVA Other Other 1 1386 0 21 36 0 0 chr3 135992175 135992203 -91532375 + AT_rich Low_complexity Low_complexity 1 28 0 372 290 48 90 chr3 135992225 135992767 -91531811 + L1MC4a LINE L1 5596 6117 -4 230 331 101 50 chr3 135993348 135993626 -91530952 - L2 LINE L2 -1 3271 2980 184 266 38 25 chr3 135994877 135994956 -91529622 + MIR SINE MIR 70 149 -113 487 228 8 31 chr3 135995283 135995410 -91529168 - MIR SINE MIR -89 173 50 286 264 264 0 chr3 135995481 135995587 -91528991 - MIR SINE MIR -73 189 56 378 247 167 0 chr3 135995736 135995886 -91528692 + MIR SINE MIR 58 232 -30 293 271 39 39 chr3 135996955 135997110 -91527468 - MIR SINE MIR -79 183 29 297 328 78 0 chr3 135997832 135997948 -91526630 - MIR3 SINE MIR -81 127 3 586 236 81 0 chr3 135998877 135999038 -91525540 - MER69A DNA AcHobo -1 176 3 1637 114 3 44 chr3 135999258 135999555 -91525023 + L1MA9 LINE L1 6022 6306 -6 22 35 0 0 chr3 135999556 135999585 -91524993 + AT_rich Low_complexity Low_complexity 1 29 0 2252 118 0 0 chr3 135999750 136000046 -91524532 - AluSx SINE Alu -16 296 1 1013 171 0 0 chr3 136001262 136001426 -91523152 + FRAM SINE Alu 2 165 -1 505 274 111 0 chr3 136002169 136002322 -91522256 - MER91A DNA MER1_type -13 183 14 490 227 43 7 chr3 136002586 136002727 -91521851 + MIR3 SINE MIR 50 195 -13 213 353 15 0 chr3 136004427 136004495 -91520083 + L2 LINE L2 3121 3189 -83 2014 143 0 3 chr3 136005556 136005880 -91518698 + AluSx SINE Alu 1 323 0 353 211 211 0 chr3 136006479 136006583 -91517995 + MER94 DNA DNA 9 134 0 1376 146 59 53 chr3 136008021 136008086 -91516492 - MER33 DNA MER1_type -2261 324 261 2069 131 3 0 chr3 136008086 136008376 -91516202 - AluSx SINE Alu -21 291 1 1376 146 59 53 chr3 136008376 136008632 -91515946 - MER33 DNA MER1_type -2324 261 1 936 128 0 0 chr3 136008646 136008779 -91515799 + FLAM_C SINE Alu 1 133 0 1054 289 112 24 chr3 136010592 136011370 -91513208 - L2 LINE L2 -4 3309 2461 275 258 150 8 chr3 136011656 136011776 -91512802 - MER103 DNA DNA -1 165 29 194 296 0 0 chr3 136011883 136011937 -91512641 - MIR SINE MIR 0 262 209 2236 117 0 0 chr3 136012042 136012349 -91512229 + AluSx SINE Alu 1 307 -5 183 162 0 0 chr3 136014714 136014751 -91509827 + (CA)n Simple_repeat Simple_repeat 2 38 0 233 250 78 0 chr3 136015762 136015826 -91508752 - MIR3 SINE MIR -13 195 127 211 286 0 0 chr3 136016788 136016837 -91507741 - MER91A DNA MER1_type -147 49 1 1887 155 3 16 chr3 136016936 136017252 -91507326 + AluJb SINE Alu 1 312 0 289 340 107 24 chr3 136017541 136017747 -91506831 + L2 LINE L2 3001 3223 -49 228 377 0 0 chr3 136018722 136018799 -91505779 + (CA)n Simple_repeat Simple_repeat 2 78 0 860 186 123 21 chr3 136018841 136019077 -91505501 - MIR SINE MIR 0 262 3 434 248 72 0 chr3 136019324 136019449 -91505129 - MIR SINE MIR -112 150 17 2344 93 3 10 chr3 136019603 136019916 -91504662 + AluSx SINE Alu 1 311 -1 1702 16 0 0 chr3 136020017 136020208 -91504370 + L1PA3 LINE L1 5961 6151 -4 215 216 0 0 chr3 136020715 136020752 -91503826 + (CA)n Simple_repeat Simple_repeat 2 38 0 793 254 42 0 chr3 136021403 136021592 -91502986 + MER117 DNA MER1_type 1 197 0 229 250 53 53 chr3 136021769 136021921 -91502657 - L1ME4a LINE L1 -1 6120 5969 268 294 29 10 chr3 136022022 136022124 -91502454 - L1ME4a LINE L1 -330 5791 5688 301 212 76 0 chr3 136022674 136022740 -91501838 + L1ME3 LINE L1 6064 6134 -28 201 286 71 0 chr3 136022877 136022933 -91501645 + L2 LINE L2 3144 3203 -69 1960 157 0 7 chr3 136024754 136025054 -91499524 - AluJb SINE Alu -12 300 3 597 269 40 10 chr3 136026256 136026466 -91498112 + MIR SINE MIR 38 252 -10 362 273 91 0 chr3 136026495 136026616 -91497962 + MIR SINE MIR 12 143 -119 236 272 0 33 chr3 136028130 136028222 -91496356 + C-rich Low_complexity Low_complexity 5 93 0 324 289 116 33 chr3 136030184 136030426 -91494152 + MIR SINE MIR 1 262 0 2140 135 0 3 chr3 136030536 136030848 -91493730 + AluSx SINE Alu 1 311 -1 207 315 41 0 chr3 136030880 136030953 -91493625 - MIR SINE MIR -110 152 77 394 204 60 16 chr3 136031248 136031403 -91493175 + L1ME LINE L1 5284 5450 -740 319 198 60 0 chr3 136031408 136031483 -91493095 - MIR SINE MIR -70 138 75 245 265 73 0 chr3 136031484 136031552 -91493026 + L1ME LINE L1 5437 5509 -657 882 214 50 25 chr3 136031589 136031827 -91492751 + MIR SINE MIR 8 251 -11 1357 203 34 69 chr3 136031928 136032162 -91492416 + Charlie7 DNA MER1_type 1792 2008 -604 1699 176 0 26 chr3 136032162 136032468 -91492110 + AluJb SINE Alu 7 304 -8 1357 203 34 69 chr3 136032468 136032641 -91491937 + Charlie7 DNA MER1_type 2008 2185 -427 318 344 0 0 chr3 136032772 136032865 -91491713 + MLT1K LTR MaLR 150 242 -346 1669 190 80 6 chr3 136032895 136033247 -91491331 - MLT1B LTR MaLR -12 378 1 669 202 89 58 chr3 136033248 136033351 -91491227 + Charlie7 DNA MER1_type 2197 2295 -317 1967 161 3 3 chr3 136033351 136033655 -91490923 - AluJb SINE Alu -8 304 1 669 202 89 58 chr3 136033655 136033779 -91490799 + Charlie7 DNA MER1_type 2295 2437 -175 1858 125 59 7 chr3 136033779 136034066 -91490512 + AluSx SINE Alu 1 302 -10 669 202 89 58 chr3 136034066 136034129 -91490449 + Charlie7 DNA MER1_type 2437 2497 -115 2139 80 0 4 chr3 136034574 136034836 -91489742 - AluY SINE Alu -14 297 37 476 293 131 32 chr3 136034899 136035324 -91489254 + MLT1K LTR MaLR 26 536 -52 1122 210 136 74 chr3 136035786 136036219 -91488359 + MLT1D LTR MaLR 46 505 0 366 304 116 64 chr3 136036238 136036259 -91488319 - MLT1K LTR MaLR -158 430 412 405 0 0 0 chr3 136036259 136036304 -91488274 + (CA)n Simple_repeat Simple_repeat 1 45 0 366 304 116 64 chr3 136036304 136036628 -91487950 - MLT1K LTR MaLR -176 412 67 202 269 0 64 chr3 136037030 136037108 -91487470 + CT-rich Low_complexity Low_complexity 1 73 0 2739 200 56 4 chr3 136037840 136038374 -91486204 - MER68 LTR ERV1 0 562 1 392 125 16 0 chr3 136038885 136038952 -91485626 - AluSc SINE Alu -62 237 185 501 262 122 0 chr3 136040142 136040314 -91484264 + MIR SINE MIR 67 259 -3 317 228 24 81 chr3 136040782 136040905 -91483673 + L1MC4 LINE L1 7808 7923 -119 247 348 9 0 chr3 136040921 136041033 -91483545 + L1MC4 LINE L1 7914 8026 -16 232 256 16 93 chr3 136041348 136041477 -91483101 + LTR67 LTR ERVL 433 551 -6 1734 157 24 0 chr3 136042305 136042598 -91481980 - AluSx SINE Alu -12 300 1 1861 146 32 67 chr3 136043766 136044170 -91480408 + MLT1B LTR MaLR 1 390 0 219 330 32 32 chr3 136044370 136044464 -91480114 + MIR SINE MIR 49 142 -120 975 231 202 10 chr3 136045936 136046301 -91478277 + LTR50 LTR ERVL 326 770 -25 1777 179 3 3 chr3 136046301 136046592 -91477986 - AluJb SINE Alu -21 291 1 975 231 202 10 chr3 136046592 136046612 -91477966 + LTR50 LTR ERVL 770 785 -10 404 179 128 43 chr3 136046627 136046744 -91477834 - MLT1B LTR MaLR -4 463 337 * 3380 161 28 29 chr3 136046714 136047352 -91477226 + MER41B LTR ERV1 5 469 -9 1252 187 29 105 chr3 136047357 136047672 -91476906 - MLT1B LTR MaLR -99 291 1 254 262 12 12 chr3 136047725 136047809 -91476769 + MIR SINE MIR 70 153 -109 360 270 164 20 chr3 136048475 136048627 -91475951 - MER5A DNA MER1_type -6 183 10 593 189 72 83 chr3 136048653 136048833 -91475745 - MER5B DNA MER1_type 0 178 1 463 275 161 0 chr3 136048845 136048994 -91475584 - MER5A DNA MER1_type -5 184 12 892 120 99 78 chr3 136049019 136049210 -91475368 - MER20 DNA MER1_type -5 214 20 2172 161 83 64 chr3 136049380 136049863 -91474715 + MLT1D LTR MaLR 1 492 -13 475 273 93 0 chr3 136050193 136050354 -91474224 + MER5B DNA MER1_type 3 178 0 324 351 18 0 chr3 136050756 136050867 -91473711 + L2 LINE L2 2977 3089 -183 696 162 51 0 chr3 136050878 136050995 -91473583 - MER20 DNA MER1_type -96 123 1 228 283 142 17 chr3 136052004 136052124 -91472454 - L2 LINE L2 -10 3303 3169 216 284 12 25 chr3 136053150 136053231 -91471347 - MIR3 SINE MIR -5 203 124 1884 158 0 3 chr3 136053399 136053690 -91470888 - AluJb SINE Alu -1 311 22 803 215 30 88 chr3 136053913 136054094 -91470484 - MLT1D LTR MaLR 0 505 327 1747 93 4 0 chr3 136054094 136054319 -91470259 + AluSp SINE Alu 83 308 -5 803 215 30 88 chr3 136054319 136054448 -91470130 - MLT1D LTR MaLR -178 327 192 1302 187 119 4 chr3 136054478 136054754 -91469824 + AluJb SINE Alu 2 306 0 888 235 132 0 chr3 136054837 136055109 -91469469 - LTR50 LTR ERVL -162 633 326 893 181 25 45 chr3 136055346 136055545 -91469033 - MLT1D LTR MaLR -309 196 2 2220 88 0 58 chr3 136056525 136056853 -91467725 - AluSg SINE Alu 0 310 2 2396 70 20 13 chr3 136056931 136057232 -91467346 - AluY SINE Alu -8 303 1 240 269 62 7 chr3 136057232 136057377 -91467201 + MER113 DNA MER1_type? 30 182 -339 * 392 107 0 0 chr3 136057371 136057427 -91467151 - Alu SINE Alu -2 300 245 1069 140 7 0 chr3 136057428 136057578 -91467000 - AluSq/x SINE Alu -162 151 1 453 116 0 0 chr3 136058594 136058663 -91465915 + (CA)n Simple_repeat Simple_repeat 2 70 0 2331 92 13 0 chr3 136059178 136059483 -91465095 + AluSx SINE Alu 1 309 -3 1182 218 50 49 chr3 136059832 136059856 -91464722 - L1MDa LINE L1 -3620 2920 2898 2167 122 7 0 chr3 136059856 136060152 -91464426 - AluSx SINE Alu -14 298 1 1182 218 50 49 chr3 136060152 136060579 -91463999 - L1MDa LINE L1 -3642 2898 2480 459 35 0 0 chr3 136061661 136061718 -91462860 + (CA)n Simple_repeat Simple_repeat 2 58 0 186 167 0 0 chr3 136061920 136061956 -91462622 + (CA)n Simple_repeat Simple_repeat 2 37 0 528 232 135 27 chr3 136062052 136062111 -91462467 - MIR SINE MIR -6 256 205 1330 128 22 0 chr3 136062111 136062337 -91462241 - L1MA8 LINE L1 0 6291 6061 528 232 135 27 chr3 136062337 136062462 -91462116 - MIR SINE MIR -57 205 52 4866 136 29 63 chr3 136062711 136063457 -91461121 - L1MA7 LINE L1 -7 6284 5612 2243 128 0 0 chr3 136063457 136063769 -91460809 - AluSq SINE Alu -1 312 1 4866 136 29 63 chr3 136063769 136064262 -91460316 - L1MA7 LINE L1 -679 5612 5104 516 323 41 20 chr3 136064719 136064914 -91459664 + MIR3 SINE MIR 1 199 -9 1315 199 84 4 chr3 136066696 136066958 -91457620 + LTR10B LTR ERV1 313 547 0 4236 260 56 28 chr3 136066958 136069159 -91455419 + LTR10B-int LTR ERV1 6 2043 -4606 * 8781 272 32 22 chr3 136069157 136072916 -91451662 + HERVI LTR ERV1 2967 7784 -1 1198 205 41 4 chr3 136073007 136073255 -91451323 + LTR10B LTR ERV1 317 547 0 619 214 29 80 chr3 136075331 136075569 -91449009 + L1ME4a LINE L1 5677 5902 -219 213 226 0 0 chr3 136076437 136076490 -91448088 + (CA)n Simple_repeat Simple_repeat 2 54 0 216 97 0 0 chr3 136077272 136077303 -91447275 + (A)n Simple_repeat Simple_repeat 1 31 0 516 289 50 44 chr3 136078098 136078468 -91446110 - HAL1b LINE L1 -816 1599 417 2530 62 0 3 chr3 136079548 136079852 -91444726 + AluY SINE Alu 1 303 -8 812 167 0 0 chr3 136079986 136080106 -91444472 + FLAM_C SINE Alu 1 120 -23 248 360 79 43 chr3 136080273 136080412 -91444166 - MIR3 SINE MIR -9 199 56 603 265 47 28 chr3 136080755 136080966 -91443612 - LTR67 LTR ERVL 0 557 343 292 367 47 20 chr3 136081195 136081345 -91443233 - LTR67 LTR ERVL -386 171 18 1195 243 166 16 chr3 136081412 136081857 -91442721 + LTR33 LTR ERVL 1 512 -9 2195 123 3 0 chr3 136082162 136082462 -91442116 - AluSx SINE Alu -11 301 1 4534 132 26 59 chr3 136082539 136083298 -91441280 + MER50 LTR ERV1 1 734 0 9728 146 84 37 chr3 136083340 136085108 -91439470 + MER50-int LTR ERV1 1 1850 -5355 1162 153 6 5 chr3 136085104 136085314 -91439264 + MER50-int LTR ERV1 1004 1177 -3703 * 6096 181 62 26 chr3 136085309 136086582 -91437996 + MER50-int LTR ERV1 3225 4543 -2662 * 9960 121 23 13 chr3 136086572 136088074 -91436504 + MER50-int LTR ERV1 4702 6217 -988 2474 107 0 22 chr3 136088055 136088421 -91436157 + MER50-int LTR ERV1 6840 7197 -8 * 4516 137 25 49 chr3 136088421 136089003 -91435575 + MER50 LTR ERV1 1 564 -170 2169 109 0 0 chr3 136089003 136089310 -91435268 - AluSx SINE Alu 0 307 1 4516 137 25 49 chr3 136089310 136089478 -91435100 + MER50 LTR ERV1 564 734 0 198 0 0 0 chr3 136090369 136090391 -91434187 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1615 149 69 14 chr3 136090404 136090679 -91433899 + AluJo SINE Alu 1 290 -22 227 372 53 26 chr3 136090821 136090934 -91433644 - L2 LINE L2 -19 3253 3138 554 301 26 18 chr3 136091158 136091387 -91433191 - L3 LINE CR1 -661 916 686 267 245 248 8 chr3 136091441 136091571 -91433007 - MIR SINE MIR -58 150 45 243 0 0 0 chr3 136091630 136091657 -91432921 + (TA)n Simple_repeat Simple_repeat 2 28 0 200 33 0 33 chr3 136091657 136091687 -91432891 + (CCCCCT)n Simple_repeat Simple_repeat 5 33 0 1476 209 21 7 chr3 136091687 136091974 -91432604 - AluJb SINE Alu -11 291 1 21 36 0 0 chr3 136091997 136092025 -91432553 + AT_rich Low_complexity Low_complexity 1 28 0 800 266 104 69 chr3 136092213 136092665 -91431913 - L1MC4a LINE L1 -258 5904 5437 518 374 160 10 chr3 136092715 136093221 -91431357 - L3 LINE CR1 -899 678 97 1124 285 102 18 chr3 136094457 136094850 -91429728 + LTR16A LTR ERVL 16 441 -9 432 147 0 0 chr3 136095926 136096001 -91428577 + (CA)n Simple_repeat Simple_repeat 2 76 0 216 97 0 0 chr3 136096783 136096814 -91427764 + (A)n Simple_repeat Simple_repeat 1 31 0 516 289 50 44 chr3 136097609 136097979 -91426599 - HAL1b LINE L1 -816 1599 417 2536 59 0 3 chr3 136099058 136099361 -91425217 + AluY SINE Alu 1 302 -9 812 167 0 0 chr3 136099495 136099615 -91424963 + FLAM_C SINE Alu 1 120 -23 248 360 79 43 chr3 136099782 136099921 -91424657 - MIR3 SINE MIR -9 199 56 603 265 47 28 chr3 136100264 136100475 -91424103 - LTR67 LTR ERVL 0 557 343 292 367 47 20 chr3 136100704 136100854 -91423724 - LTR67 LTR ERVL -386 171 18 1178 237 174 18 chr3 136100921 136101364 -91423214 + LTR33 LTR ERVL 1 512 -9 2182 126 3 0 chr3 136101669 136101970 -91422608 - AluSx SINE Alu -10 302 1 4516 131 26 63 chr3 136102047 136102809 -91421769 + MER50 LTR ERV1 1 734 0 9716 147 84 37 chr3 136102851 136104619 -91419959 + MER50-int LTR ERV1 1 1850 -5355 1162 153 6 5 chr3 136104615 136104825 -91419753 + MER50-int LTR ERV1 1004 1177 -3703 * 6058 182 63 26 chr3 136104820 136106092 -91418486 + MER50-int LTR ERV1 3225 4543 -2662 * 9960 121 23 13 chr3 136106082 136107584 -91416994 + MER50-int LTR ERV1 4702 6217 -988 2491 104 0 22 chr3 136107565 136107931 -91416647 + MER50-int LTR ERV1 6840 7197 -8 * 4515 137 25 49 chr3 136107931 136108513 -91416065 + MER50 LTR ERV1 1 564 -170 2169 109 0 0 chr3 136108513 136108820 -91415758 - AluSx SINE Alu 0 307 1 4515 137 25 49 chr3 136108820 136108988 -91415590 + MER50 LTR ERV1 564 734 0 198 0 0 0 chr3 136109875 136109897 -91414681 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1615 149 69 14 chr3 136109910 136110185 -91414393 + AluJo SINE Alu 1 290 -22 227 372 53 26 chr3 136110327 136110440 -91414138 - L2 LINE L2 -19 3253 3138 554 301 26 18 chr3 136110664 136110893 -91413685 - L3 LINE CR1 -661 916 686 267 245 248 8 chr3 136110947 136111077 -91413501 - MIR SINE MIR -58 150 45 22 35 0 0 chr3 136111122 136111151 -91413427 + AT_rich Low_complexity Low_complexity 1 29 0 240 35 0 0 chr3 136111151 136111180 -91413398 + (CCCCCT)n Simple_repeat Simple_repeat 5 33 0 1625 187 7 4 chr3 136111189 136111467 -91413111 - AluJo SINE Alu -33 279 1 21 36 0 0 chr3 136111490 136111518 -91413060 + AT_rich Low_complexity Low_complexity 1 28 0 812 263 104 69 chr3 136111707 136112159 -91412419 - L1MC4a LINE L1 -258 5904 5437 547 373 165 10 chr3 136112209 136112713 -91411865 - L3 LINE CR1 -899 678 97 1168 285 99 15 chr3 136113948 136114341 -91410237 + LTR16A LTR ERVL 16 441 -9 904 315 85 0 chr3 136114943 136115295 -91409283 - LTR16B LTR ERVL 0 464 83 856 281 37 40 chr3 136115608 136115976 -91408602 - LTR16B LTR ERVL -8 442 104 609 202 36 89 chr3 136117365 136117406 -91407172 - MIR SINE MIR -37 225 183 2387 98 0 13 chr3 136117406 136117721 -91406857 - AluSx SINE Alu -1 311 1 609 202 36 89 chr3 136117721 136117847 -91406731 - MIR SINE MIR -79 183 67 323 227 114 74 chr3 136118990 136119166 -91405412 + MER5A DNA MER1_type 4 186 -3 2388 103 0 0 chr3 136119212 136119524 -91405054 + AluSx SINE Alu 1 312 0 3231 187 42 74 chr3 136119549 136120288 -91404290 + L1ME1 LINE L1 4614 5375 -791 2301 110 0 0 chr3 136120288 136120597 -91403981 + AluSx SINE Alu 1 309 -3 3231 187 42 74 chr3 136120597 136121458 -91403120 + L1ME1 LINE L1 5375 6163 -3 276 316 102 6 chr3 136121511 136121688 -91402890 - L2 LINE L2 -12 3301 3108 757 192 102 18 chr3 136122224 136122391 -91402187 + MER5A DNA MER1_type 2 182 -7 737 140 93 33 chr3 136122697 136122847 -91401731 - FRAM SINE Alu 0 176 18 223 298 53 32 chr3 136122994 136123088 -91401490 + MIR SINE MIR 45 140 -68 535 275 39 53 chr3 136123951 136124158 -91400420 - MIR SINE MIR -16 246 43 319 295 133 60 chr3 136124193 136124359 -91400219 + LTR33 LTR ERVL 1 178 -343 2335 105 0 3 chr3 136124390 136124703 -91399875 + AluSx SINE Alu 1 312 0 1084 237 101 53 chr3 136125843 136126543 -91398035 - L1MEc LINE L1 -3881 2515 1747 3503 200 78 45 chr3 136126660 136126703 -91397875 - L1ME1 LINE L1 -7 6419 6379 2051 139 7 10 chr3 136126703 136127006 -91397572 - AluSx SINE Alu -10 302 1 3503 200 78 45 chr3 136127006 136127093 -91397485 - L1ME1 LINE L1 -47 6379 6296 2143 116 0 10 chr3 136127093 136127386 -91397192 - AluSx SINE Alu -22 290 1 3503 200 78 45 chr3 136127386 136128229 -91396349 - L1ME1 LINE L1 -130 6296 5430 2959 246 27 31 chr3 136128278 136129239 -91395339 - L1ME1 LINE L1 -2275 4131 3175 2800 217 60 41 chr3 136129237 136130182 -91394396 - L1ME1 LINE L1 -4383 2023 1061 * 2574 189 31 12 chr3 136130163 136130682 -91393896 - L1PA16 LINE L1 -1850 4296 3768 * 5291 163 28 46 chr3 136130680 136130778 -91393800 + L1PA16 LINE L1 4286 4384 -1782 812 178 0 0 chr3 136130778 136130896 -91393682 + FLAM_C SINE Alu 1 118 -15 5291 163 28 46 chr3 136130896 136130948 -91393630 + L1PA16 LINE L1 4384 4435 -1731 180 0 0 0 chr3 136130948 136130968 -91393610 + (CA)n Simple_repeat Simple_repeat 1 20 0 5291 163 28 46 chr3 136130968 136132491 -91392087 + L1PA16 LINE L1 4435 5910 -256 1917 161 3 10 chr3 136132491 136132796 -91391782 + AluSx SINE Alu 1 303 -9 5291 163 28 46 chr3 136132796 136133049 -91391529 + L1PA16 LINE L1 5910 6166 0 971 239 60 11 chr3 136133044 136133328 -91391250 - L1ME1 LINE L1 -5341 1068 771 * 2027 101 18 0 chr3 136133962 136134284 -91390294 + AluSx SINE Alu 1 327 0 22 0 0 0 chr3 136134493 136134515 -91390063 + AT_rich Low_complexity Low_complexity 1 22 0 15065 185 37 12 chr3 136134515 136134639 -91389939 - L1PB2 LINE L1 -2 6206 6087 2057 154 0 0 chr3 136134639 136134951 -91389627 - AluSx SINE Alu 0 312 1 15065 185 37 12 chr3 136134951 136136588 -91387990 - L1PB2 LINE L1 -121 6087 4492 333 0 0 0 chr3 136136588 136136625 -91387953 + (TTTTA)n Simple_repeat Simple_repeat 3 39 0 15065 185 37 12 chr3 136136625 136140283 -91384295 - L1PB2 LINE L1 -1716 4492 633 180 0 0 0 chr3 136140283 136140303 -91384275 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 15065 185 37 12 chr3 136140303 136140945 -91383633 - L1PB2 LINE L1 -5575 633 9 8691 178 36 4 chr3 136140913 136142506 -91382072 - L1PBa LINE L1 -5219 1644 1 * 2739 139 59 0 chr3 136142609 136143013 -91381565 - MSTC LTR MaLR 0 428 1 721 165 9 0 chr3 136143411 136143520 -91381058 + FLAM_A SINE Alu 12 121 -21 2934 166 34 6 chr3 136143525 136144019 -91380559 + MLT2B3 LTR ERVL 1 508 -46 530 29 15 0 chr3 136144019 136144087 -91380491 + (TCTA)n Simple_repeat Simple_repeat 2 70 0 1890 103 70 0 chr3 136144102 136144375 -91380203 - MER4A LTR ERV1 -58 606 315 3739 157 19 3 chr3 136144489 136145582 -91378996 + L1PA16 LINE L1 4731 5839 -327 470 157 2 20 chr3 136146102 136146204 -91378374 - L1MC/D LINE L1 -418 5748 5662 407 211 11 11 chr3 136146508 136146598 -91377980 - MER20B DNA MER1_type 0 783 694 806 151 0 17 chr3 136146601 136146720 -91377858 + FRAM SINE Alu 43 159 -17 757 234 117 4 chr3 136146783 136147031 -91377547 - MER20B DNA MER1_type -166 617 342 1032 118 0 0 chr3 136147044 136147179 -91377399 + AluSq/x SINE Alu 1 135 -177 2406 86 7 0 chr3 136147179 136147481 -91377097 + AluSx SINE Alu 1 304 -8 1158 286 21 3 chr3 136147491 136147816 -91376762 - MER20B DNA MER1_type -452 331 1 184 352 23 55 chr3 136149626 136149754 -91374824 + L2 LINE L2 2724 2847 -467 586 263 46 11 chr3 136149807 136149982 -91374596 + MIR SINE MIR 54 234 -28 217 276 191 29 chr3 136150278 136150383 -91374195 + L2 LINE L2 3139 3260 -12 522 276 40 29 chr3 136150843 136151017 -91373561 + MIR3 SINE MIR 32 207 -1 282 306 112 84 chr3 136152243 136152599 -91371979 - L3b LINE CR1 -21 1562 1197 384 22 0 0 chr3 136153698 136153743 -91370835 + (CA)n Simple_repeat Simple_repeat 2 46 0 28 29 0 0 chr3 136154845 136154880 -91369698 + AT_rich Low_complexity Low_complexity 1 35 0 210 100 80 0 chr3 136155431 136155481 -91369097 + CT-rich Low_complexity Low_complexity 5 58 0 1557 158 0 70 chr3 136155908 136156206 -91368372 + AluJb SINE Alu 1 277 -35 3137 144 16 46 chr3 136157648 136158218 -91366360 + L1MB7 LINE L1 5625 6177 -7 687 121 121 26 chr3 136158232 136158348 -91366230 + AluJo/FLAM SINE Alu 1 127 -175 2600 40 0 3 chr3 136158348 136158647 -91365931 + AluY SINE Alu 1 298 -13 338 328 26 9 chr3 136160003 136160119 -91364459 - L2 LINE L2 -2 3311 3194 2286 96 3 7 chr3 136160166 136160467 -91364111 + AluSx SINE Alu 2 301 -11 280 307 79 0 chr3 136160468 136160595 -91363983 + MIR SINE MIR 99 235 -27 694 280 86 8 chr3 136160746 136160989 -91363589 + MIR SINE MIR 1 262 0 282 275 12 12 chr3 136161021 136161101 -91363477 - MIR3 SINE MIR -21 187 108 767 232 51 47 chr3 136161501 136161755 -91362823 - MER112 DNA MER1_type -1 255 1 759 218 47 34 chr3 136161818 136162052 -91362526 - L2 LINE L2 0 3313 3077 559 110 40 0 chr3 136162056 136162156 -91362422 + GA-rich Low_complexity Low_complexity 4 107 0 320 234 54 27 chr3 136162159 136162270 -91362308 - L1ME4a LINE L1 -66 6055 5942 302 231 51 13 chr3 136162563 136162673 -91361905 - MIR SINE MIR -64 144 27 312 255 128 21 chr3 136163072 136163166 -91361412 + MIR SINE MIR 21 124 -84 237 158 0 0 chr3 136163419 136163457 -91361121 + MIR3 SINE MIR 156 193 -15 565 312 51 9 chr3 136164265 136164480 -91360098 - MIR SINE MIR -37 225 2 1408 245 8 58 chr3 136165100 136165496 -91359082 + LTR16C LTR ERVL 115 490 -1 722 171 39 8 chr3 136165504 136165633 -91358945 + AluSq/x SINE Alu 1 133 -180 5182 139 22 28 chr3 136165754 136166658 -91357920 + L1MB1 LINE L1 5270 6168 0 241 242 140 83 chr3 136166659 136166816 -91357762 - L2 LINE L2 -808 2506 2341 580 259 20 58 chr3 136166979 136167272 -91357306 + L1MC5 LINE L1 7650 7931 -30 250 248 23 135 chr3 136167644 136167777 -91356801 - MIR SINE MIR -118 144 27 2161 121 0 0 chr3 136168219 136168517 -91356061 + AluSx SINE Alu 1 298 -14 36528 29 3 1 chr3 136168695 136174831 -91349747 + L1HS LINE L1 9 6155 0 207 69 0 0 chr3 136174831 136174860 -91349718 + (A)n Simple_repeat Simple_repeat 1 29 0 570 348 20 30 chr3 136174995 136175291 -91349287 + ERVL LTR ERVL 4107 4399 -1365 305 365 19 48 chr3 136175483 136175861 -91348717 + ERVL LTR ERVL 4621 4987 -498 207 139 0 0 chr3 136176432 136176448 -91348130 + (A)n Simple_repeat Simple_repeat 1 16 -27 27557 29 0 0 chr3 136176448 136180326 -91344252 + L1PA3 LINE L1 2273 6152 -3 207 139 0 0 chr3 136180326 136180352 -91344226 + (A)n Simple_repeat Simple_repeat 15 43 0 279 164 137 62 chr3 136180393 136180539 -91344039 + L1ME4a LINE L1 5963 6119 -2 2141 121 0 3 chr3 136180801 136181099 -91343479 + AluSg SINE Alu 1 297 -13 189 0 0 0 chr3 136182434 136182455 -91342123 + (TG)n Simple_repeat Simple_repeat 1 21 0 420 307 195 34 chr3 136182604 136183201 -91341377 - L2 LINE L2 0 3272 2590 321 280 166 11 chr3 136183671 136183846 -91340732 + L1M4 LINE L1 2507 2708 -3438 404 311 105 5 chr3 136184013 136184393 -91340185 + L1M4 LINE L1 2746 3163 -2983 * 410 250 40 0 chr3 136184391 136184491 -91340087 + L1MC1 LINE L1 4585 4688 -1458 * 6594 127 7 22 chr3 136184483 136184793 -91339785 + L1MC1 LINE L1 5299 5612 -721 2178 118 3 0 chr3 136184793 136185089 -91339489 - AluSq SINE Alu -16 297 1 6594 127 7 22 chr3 136185089 136185829 -91338749 + L1MC1 LINE L1 5612 6333 0 2028 281 78 56 chr3 136185806 136187352 -91337226 + L1M4 LINE L1 3181 4759 -1387 * 1048 151 164 20 chr3 136187917 136188221 -91336357 - MER69 DNA AcHobo -7 2519 2172 194 228 18 53 chr3 136189215 136189272 -91335306 + MER5A DNA MER1_type 48 102 -87 815 197 0 0 chr3 136189344 136189471 -91335107 - FLAM_A SINE Alu -6 127 1 1961 191 35 26 chr3 136189616 136189831 -91334747 + MER66B LTR ERV1 27 239 -247 2408 32 0 11 chr3 136189831 136190138 -91334440 - AluY SINE Alu 0 304 1 1961 191 35 26 chr3 136190138 136190377 -91334201 + MER66B LTR ERV1 239 486 0 535 263 67 49 chr3 136191523 136191729 -91332849 - MIR SINE MIR -43 219 12 718 287 26 17 chr3 136192380 136192610 -91331968 + MIR SINE MIR 21 252 -10 588 102 61 0 chr3 136192612 136192759 -91331819 + (TA)n Simple_repeat Simple_repeat 1 156 0 221 289 52 52 chr3 136192873 136192970 -91331608 + MIR SINE MIR 33 129 -133 534 316 53 18 chr3 136193205 136193433 -91331145 - MIR SINE MIR -26 236 1 270 262 241 7 chr3 136193534 136193675 -91330903 + MIR SINE MIR 20 193 -69 2003 152 0 3 chr3 136193724 136194027 -91330551 - AluJb SINE Alu -10 302 1 2627 248 139 19 chr3 136194050 136195261 -91329317 - L2 LINE L2 0 3313 1956 210 37 0 0 chr3 136195783 136195810 -91328768 + (T)n Simple_repeat Simple_repeat 1 27 0 196 29 29 29 chr3 136196494 136196528 -91328050 + (ATTAG)n Simple_repeat Simple_repeat 1 34 0 23 33 0 0 chr3 136197799 136197829 -91326749 + AT_rich Low_complexity Low_complexity 1 30 0 295 302 135 0 chr3 136198193 136198289 -91326289 - L2 LINE L2 -2 3311 3203 248 276 237 13 chr3 136198637 136198793 -91325785 + MIR SINE MIR 8 198 -64 419 281 71 20 chr3 136198970 136199166 -91325412 - LTR16C LTR ERVL -10 481 276 272 331 88 33 chr3 136199591 136199953 -91324625 - ERVL LTR ERVL -380 5384 5003 300 314 97 23 chr3 136200017 136200192 -91324386 - ERVL LTR ERVL -621 4864 4677 830 253 43 32 chr3 136200390 136200643 -91323935 - ERVL LTR ERVL -2350 3304 3049 773 209 51 32 chr3 136200644 136200802 -91323776 + FRAM SINE Alu 1 159 -17 1000 309 8 4 chr3 136200802 136201054 -91323524 - ERVL LTR ERVL -1937 3059 2807 1527 137 23 62 chr3 136201529 136201836 -91322742 + MER44D DNA MER2_type 40 604 -5 1246 148 39 0 chr3 136201982 136202185 -91322393 + MER2 DNA MER2_type 1 211 -134 24 67 0 0 chr3 136202189 136202234 -91322344 + AT_rich Low_complexity Low_complexity 1 45 0 621 256 131 40 chr3 136202325 136202518 -91322060 - L1ME4a LINE L1 -176 5945 5771 2330 98 0 0 chr3 136202518 136202814 -91321764 - AluSx SINE Alu -16 296 1 621 256 131 40 chr3 136202814 136203018 -91321560 - L1ME4a LINE L1 -350 5771 5512 510 275 127 0 chr3 136203027 136203216 -91321362 + MIR SINE MIR 22 234 -28 1793 158 7 18 chr3 136203359 136203686 -91320892 - AluJb SINE Alu 0 324 1 204 40 0 0 chr3 136203692 136203717 -91320861 + (TC)n Simple_repeat Simple_repeat 2 26 0 808 171 0 0 chr3 136203735 136203852 -91320726 - FLAM_C SINE Alu -15 118 2 415 319 81 0 chr3 136204318 136204503 -91320075 - L2 LINE L2 -480 2834 2635 4319 136 23 9 chr3 136205114 136205777 -91318801 - L1PA15 LINE L1 -13 6152 5481 2182 122 3 0 chr3 136206460 136206755 -91317823 + AluSx SINE Alu 1 296 -16 254 253 189 11 chr3 136207141 136207236 -91317342 - L2 LINE L2 -7 3265 3154 510 261 122 31 chr3 136207255 136207477 -91317101 - MIR SINE MIR -6 256 15 4563 123 2 3 chr3 136207592 136208228 -91316350 + MER41B LTR ERV1 1 635 0 410 250 87 0 chr3 136208255 136208359 -91316219 - MIR3 SINE MIR -3 205 93 437 244 173 27 chr3 136208703 136208928 -91315650 + MLT1L LTR MaLR 3 260 -355 264 294 83 0 chr3 136209110 136209219 -91315359 + MLT1J LTR MaLR 394 511 0 501 300 157 18 chr3 136209620 136209843 -91314735 - MIR SINE MIR -1 261 8 888 236 101 0 chr3 136209943 136209984 -91314594 - MIR SINE MIR 0 262 227 194 0 39 0 chr3 136209984 136210010 -91314568 + (CTATT)n Simple_repeat Simple_repeat 4 30 0 888 236 101 0 chr3 136210010 136210205 -91314373 - MIR SINE MIR -35 227 2 23 0 0 0 chr3 136210250 136210273 -91314305 + AT_rich Low_complexity Low_complexity 1 23 0 857 161 13 7 chr3 136210513 136210662 -91313916 - LTR9B LTR ERV1 0 644 495 2539 99 0 104 chr3 136210662 136210769 -91313809 - MER48 LTR ERV1 0 387 270 190 0 0 62 chr3 136210769 136210801 -91313777 + (TTTTA)n Simple_repeat Simple_repeat 4 33 0 5957 70 6 0 chr3 136210801 136211525 -91313053 - L1PA6 LINE L1 -13 6141 5414 2539 99 0 104 chr3 136211525 136211848 -91312730 - MER48 LTR ERV1 -115 272 1 3297 94 68 2 chr3 136211848 136212316 -91312262 - LTR9B LTR ERV1 -145 499 1 1765 139 65 31 chr3 136212411 136212735 -91311843 - LTR10A LTR ERV1 -61 548 214 315 241 126 0 chr3 136212757 136212844 -91311734 - LTR10A LTR ERV1 -511 98 1 11793 149 12 32 chr3 136212852 136213430 -91311148 - Harlequin LTR ERV1 -9 6640 6052 2423 64 0 13 chr3 136213430 136213728 -91310850 - AluY SINE Alu -17 294 1 11793 149 12 32 chr3 136213728 136216299 -91308279 - Harlequin LTR ERV1 -597 6052 1846 383 222 156 0 chr3 136216299 136216389 -91308189 + LTR8 LTR ERV1 150 253 -438 5615 75 20 116 chr3 136216391 136217053 -91307525 - LTR10A-int LTR ERV1 -5176 1720 1173 2270 110 0 0 chr3 136217053 136217406 -91307172 - AluY SINE Alu 0 311 1 5615 75 20 116 chr3 136217406 136217843 -91306735 - LTR10A-int LTR ERV1 -5723 1173 696 525 183 39 0 chr3 136217847 136218000 -91306578 + CT-rich Low_complexity Low_complexity 2 160 0 300 185 120 76 chr3 136218055 136218147 -91306431 - LTR10A-int LTR ERV1 -5579 1070 975 346 234 206 38 chr3 136218186 136218395 -91306183 - LTR10A-int LTR ERV1 -5936 713 470 964 225 57 39 chr3 136218689 136218969 -91305609 - LTR10A-int LTR ERV1 -6364 285 1 1922 175 107 22 chr3 136218978 136219439 -91305139 - LTR10A LTR ERV1 -61 548 1 875 167 0 8 chr3 136219558 136219690 -91304888 + FLAM_A SINE Alu 1 131 -2 604 286 29 11 chr3 136219770 136219945 -91304633 - MER5B DNA MER1_type 0 178 1 992 226 23 23 chr3 136219955 136220172 -91304406 - MER20 DNA MER1_type -1 218 2 1068 129 0 0 chr3 136220264 136220434 -91304144 + (TA)n Simple_repeat Simple_repeat 2 171 0 306 0 0 0 chr3 136220435 136220469 -91304109 + (GA)n Simple_repeat Simple_repeat 1 34 0 1087 240 147 8 chr3 136220964 136221339 -91303239 - LTR16C LTR ERVL -64 427 1 1810 159 10 7 chr3 136221432 136221728 -91302850 + AluJb SINE Alu 1 297 -15 425 306 68 41 chr3 136221793 136222012 -91302566 + L2 LINE L2 2442 2666 -648 195 298 125 10 chr3 136222066 136222170 -91302408 + L2 LINE L2 2966 3081 -191 1879 169 3 0 chr3 136222270 136222572 -91302006 - AluSx SINE Alu -6 306 4 405 0 0 0 chr3 136222581 136222626 -91301952 + (TTTA)n Simple_repeat Simple_repeat 2 46 0 350 265 61 38 chr3 136222652 136222730 -91301848 + L2 LINE L2 3133 3217 -55 1174 144 11 0 chr3 136222730 136222917 -91301661 + MER53 DNA DNA 1 189 0 350 265 61 38 chr3 136222917 136222970 -91301608 + L2 LINE L2 3217 3267 -5 314 331 74 0 chr3 136223257 136223378 -91301200 + L2 LINE L2 3139 3268 -4 655 198 9 0 chr3 136223396 136223507 -91301071 + MER81 DNA DNA 1 112 -2 336 242 133 16 chr3 136224387 136224515 -91300063 + MIR3 SINE MIR 2 144 -64 337 251 91 24 chr3 136224643 136224768 -91299810 - MIR3 SINE MIR -52 156 37 7169 163 6 2 chr3 136225279 136226534 -91298044 + L1PA14 LINE L1 3906 5165 -981 270 0 0 0 chr3 136226534 136226564 -91298014 + (TA)n Simple_repeat Simple_repeat 1 30 0 399 41 0 0 chr3 136226573 136226622 -91297956 + (CA)n Simple_repeat Simple_repeat 2 50 0 2512 130 13 5 chr3 136226622 136226989 -91297589 + L1PA14 LINE L1 5789 6161 0 1703 120 8 12 chr3 136226989 136227246 -91297332 + L1MA2 LINE L1 6043 6299 -5 494 261 31 15 chr3 136228564 136228694 -91295884 - MIR SINE MIR -111 151 20 643 312 132 4 chr3 136229782 136230032 -91294546 - L3 LINE CR1 -1 1576 1295 2567 59 0 0 chr3 136230939 136231242 -91293336 + AluY SINE Alu 1 303 -8 189 276 40 53 chr3 136231655 136231731 -91292847 + MER5A DNA MER1_type 1 75 -114 1824 154 0 30 chr3 136231731 136232036 -91292542 + AluJb SINE Alu 1 296 -16 948 189 0 13 chr3 136232037 136232196 -91292382 + MER5A DNA MER1_type 32 188 -1 282 241 0 0 chr3 136232858 136232916 -91291662 - L2 LINE L2 0 3272 3215 543 282 36 71 chr3 136232926 136233178 -91291400 + MIR SINE MIR 12 254 -8 27 0 0 0 chr3 136233186 136233213 -91291365 + AT_rich Low_complexity Low_complexity 1 27 0 255 93 0 0 chr3 136233339 136233382 -91291196 + (TC)n Simple_repeat Simple_repeat 2 44 0 2602 167 31 0 chr3 136233603 136234016 -91290562 + MSTB LTR MaLR 1 426 0 2190 99 57 24 chr3 136234436 136234532 -91290046 - L1PA16 LINE L1 0 6166 6075 2804 113 3 3 chr3 136234532 136234896 -91289682 + THE1B LTR MaLR 1 364 0 2190 99 57 24 chr3 136234896 136235131 -91289447 - L1PA16 LINE L1 -91 6075 5824 308 312 28 9 chr3 136235768 136235877 -91288701 - L2 LINE L2 -195 3077 2967 324 67 0 0 chr3 136235877 136235910 -91288668 + (GGAA)n Simple_repeat Simple_repeat 3 38 -9 330 44 0 0 chr3 136235910 136235955 -91288623 + L1PA15 LINE L1 6121 6165 0 324 67 0 0 chr3 136235955 136235966 -91288612 + (GGAA)n Simple_repeat Simple_repeat 37 47 0 207 0 0 0 chr3 136235987 136236010 -91288568 + (GGGA)n Simple_repeat Simple_repeat 4 26 0 1148 257 98 45 chr3 136238044 136238228 -91286350 - LTR33 LTR ERVL -58 463 290 837 268 24 24 chr3 136238228 136238437 -91286141 + MER63A DNA MER1_type 1 209 -1 1148 257 98 45 chr3 136238437 136238692 -91285886 - LTR33 LTR ERVL -231 290 1 250 306 35 116 chr3 136238748 136238876 -91285702 - MER5A DNA MER1_type -2 187 79 2224 110 0 0 chr3 136238876 136239166 -91285412 - AluSx SINE Alu -22 290 1 250 306 35 116 chr3 136239166 136239236 -91285342 - MER5A DNA MER1_type -110 79 5 438 250 70 79 chr3 136239790 136240018 -91284560 + MIR SINE MIR 20 245 -17 204 188 42 0 chr3 136240465 136240513 -91284065 + GA-rich Low_complexity Low_complexity 3 52 0 22 35 0 0 chr3 136242261 136242290 -91282288 + AT_rich Low_complexity Low_complexity 1 29 0 686 298 114 36 chr3 136243721 136244161 -91280417 - L2 LINE L2 -13 3300 2827 245 306 16 0 chr3 136244212 136244274 -91280304 - MIR SINE MIR -169 93 31 766 83 0 58 chr3 136244493 136244613 -91279965 + MER4E LTR ERV1 654 766 0 5205 116 86 113 chr3 136244613 136244873 -91279705 + MER4E-int LTR ERV1 1 266 -6492 2341 96 0 6 chr3 136244873 136245185 -91279393 - AluSg SINE Alu 0 310 1 5205 116 86 113 chr3 136245185 136246015 -91278563 + MER4E-int LTR ERV1 266 1062 -5696 1160 97 12 12 chr3 136246015 136246180 -91278398 + MER4E LTR ERV1 586 750 -29 1436 198 124 30 chr3 136247622 136248056 -91276522 + Charlie4a DNA MER1_type 34 508 0 1216 191 29 0 chr3 136249543 136249753 -91274825 - MER20 DNA MER1_type -3 216 1 210 346 12 0 chr3 136249974 136250031 -91274547 + L3 LINE CR1 1493 1553 -24 617 197 197 14 chr3 136250031 136250178 -91274400 + MER5B DNA MER1_type 1 174 -4 210 346 12 0 chr3 136250178 136250201 -91274377 + L3 LINE CR1 1553 1574 -3 186 208 0 0 chr3 136250236 136250284 -91274294 + (CCAA)n Simple_repeat Simple_repeat 4 51 0 210 279 29 0 chr3 136250378 136250446 -91274132 + GA-rich Low_complexity Low_complexity 3 72 0 2181 130 0 0 chr3 136250533 136250834 -91273744 + AluSg SINE Alu 1 301 -9 1612 216 77 11 chr3 136251695 136252061 -91272517 + MLT1B LTR MaLR 1 390 0 224 224 103 17 chr3 136252175 136252233 -91272345 + L2 LINE L2 3251 3313 0 2103 106 0 0 chr3 136252317 136252592 -91271986 - AluSx SINE Alu -35 277 3 718 184 28 0 chr3 136252763 136252904 -91271674 - L1M4 LINE L1 -3538 2608 2464 246 164 55 18 chr3 136253133 136253188 -91271390 + L3 LINE CR1 1516 1572 -5 2877 116 2 88 chr3 136253352 136253818 -91270760 - MSTA LTR MaLR -2 426 1 10138 152 27 30 chr3 136253818 136255474 -91269104 - MSTA-int LTR MaLR 0 1651 1 1240 141 59 27 chr3 136255476 136255696 -91268882 - MSTA LTR MaLR -2 424 198 * 1963 130 72 6 chr3 136255684 136256015 -91268563 + MSTA LTR MaLR 76 428 0 2044 93 0 0 chr3 136256285 136256543 -91268035 + AluSq SINE Alu 1 258 -55 183 42 0 0 chr3 136256550 136256574 -91268004 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 314 233 0 0 chr3 136256678 136256738 -91267840 + L2 LINE L2 3248 3307 -6 350 206 0 82 chr3 136256738 136256835 -91267743 - MIR SINE MIR -72 190 102 282 258 140 0 chr3 136257121 136257214 -91267364 - L2 LINE L2 0 3313 3208 428 297 110 19 chr3 136258169 136258324 -91266254 + MER5A DNA MER1_type 7 175 -14 315 270 26 9 chr3 136258503 136258528 -91266050 + GA-rich Low_complexity Low_complexity 2 25 -93 2152 164 66 6 chr3 136258528 136258894 -91265684 + MLT1B LTR MaLR 3 390 0 315 270 26 9 chr3 136258894 136258983 -91265595 + GA-rich Low_complexity Low_complexity 25 118 0 1031 145 62 32 chr3 136259037 136259307 -91265271 - THE1B LTR MaLR 0 364 1 348 281 126 26 chr3 136259452 136259683 -91264895 + L1ME4a LINE L1 5695 5948 -173 1821 178 0 9 chr3 136260118 136260473 -91264105 - AluJb SINE Alu 0 352 1 271 235 47 24 chr3 136260530 136260615 -91263963 + L1ME4a LINE L1 5946 6032 -89 1891 103 3 97 chr3 136262215 136262550 -91262028 - AluSp SINE Alu 0 310 5 2028 155 0 7 chr3 136262785 136263094 -91261484 + AluJb SINE Alu 1 307 -5 40 37 0 0 chr3 136263516 136263570 -91261008 + AT_rich Low_complexity Low_complexity 1 54 0 300 246 105 89 chr3 136263682 136263873 -91260705 + MER91A DNA MER1_type 1 194 -2 188 159 0 23 chr3 136264263 136264307 -91260271 + GA-rich Low_complexity Low_complexity 1 43 0 473 236 199 6 chr3 136264414 136264575 -91260003 - MIR SINE MIR -24 238 47 357 24 0 0 chr3 136265190 136265232 -91259346 + (CA)n Simple_repeat Simple_repeat 1 42 0 2145 152 98 3 chr3 136265235 136265603 -91258975 + MER57A LTR ERV1 1 403 0 2473 114 47 14 chr3 136265649 136266010 -91258568 + THE1C LTR MaLR 3 375 0 395 261 92 67 chr3 136266971 136267209 -91257369 - L1MC/D LINE L1 -2269 5539 5296 5529 71 7 0 chr3 136267223 136267900 -91256678 + L1PA10 LINE L1 5484 6165 -3 266 287 287 0 chr3 136268415 136268544 -91256034 + MIR SINE MIR 76 241 -21 261 57 0 0 chr3 136268697 136268732 -91255846 + (TAGG)n Simple_repeat Simple_repeat 1 35 0 788 256 24 61 chr3 136269500 136269746 -91254832 - MIR SINE MIR -1 261 25 237 190 0 17 chr3 136270893 136270951 -91253627 - L1ME4a LINE L1 -8 6113 6057 212 354 0 15 chr3 136272276 136272341 -91252237 + L2 LINE L2 3129 3192 -80 9286 50 5 5 chr3 136272602 136273673 -91250905 + MER11C LTR ERVK 1 1071 0 2166 166 50 73 chr3 136275192 136275697 -91248881 + MLT1D LTR MaLR 5 497 -8 269 257 186 18 chr3 136275722 136275835 -91248743 + MER5A DNA MER1_type 20 151 -38 262 297 31 0 chr3 136275830 136275894 -91248684 - MIR SINE MIR -116 146 81 * 21 0 0 0 chr3 136275902 136275923 -91248655 + AT_rich Low_complexity Low_complexity 1 21 0 272 327 0 0 chr3 136276389 136276502 -91248076 + L2 LINE L2 2227 2339 -975 211 328 99 30 chr3 136276549 136276680 -91247898 + L2 LINE L2 2928 3067 -205 333 268 145 50 chr3 136277147 136277326 -91247252 + MIR SINE MIR 22 217 -45 200 298 18 0 chr3 136277721 136277778 -91246800 + MIR3 SINE MIR 144 201 -7 456 184 58 0 chr3 136278931 136279034 -91245544 + MLT1H LTR MaLR 1 109 -440 672 219 88 19 chr3 136279105 136279378 -91245200 + MLT1H LTR MaLR 241 549 0 27 0 0 0 chr3 136280163 136280190 -91244388 + AT_rich Low_complexity Low_complexity 1 27 0 1845 156 14 3 chr3 136280190 136280479 -91244099 - AluJo SINE Alu -20 292 1 835 204 6 6 chr3 136280484 136280641 -91243937 - AluJb SINE Alu -20 292 136 219 297 39 78 chr3 136280781 136280909 -91243669 - L2 LINE L2 -164 3108 2986 484 281 13 20 chr3 136280960 136281113 -91243465 + HAL1 LINE L1 1839 1990 -517 305 326 21 64 chr3 136281521 136281708 -91242870 + MER5A DNA MER1_type 7 185 -4 1080 221 118 53 chr3 136282350 136282825 -91241753 - MER39 LTR ERV1 0 683 1 752 192 20 20 chr3 136283041 136283192 -91241386 - AluJb SINE Alu -30 282 132 276 53 0 0 chr3 136283514 136283552 -91241026 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 2083 100 22 0 chr3 136283562 136283833 -91240745 - AluSx SINE Alu -35 277 1 24 53 0 0 chr3 136283833 136283871 -91240707 + AT_rich Low_complexity Low_complexity 1 38 0 180 0 0 0 chr3 136284538 136284558 -91240020 + (CA)n Simple_repeat Simple_repeat 2 21 0 2089 165 14 8 chr3 136287067 136287430 -91237148 + MER47A DNA MER2_type 2 366 0 2343 87 0 0 chr3 136287941 136288240 -91236338 - AluY SINE Alu -12 299 1 27 49 0 0 chr3 136288547 136288588 -91235990 + AT_rich Low_complexity Low_complexity 1 41 0 21 36 0 0 chr3 136289849 136289877 -91234701 + AT_rich Low_complexity Low_complexity 1 28 0 333 311 82 7 chr3 136291121 136291256 -91233322 + MIR SINE MIR 58 202 -60 336 48 0 0 chr3 136292335 136292377 -91232201 + (CA)n Simple_repeat Simple_repeat 2 43 0 359 353 10 14 chr3 136292712 136292902 -91231676 + MER5A DNA MER1_type 1 178 0 194 267 0 0 chr3 136292902 136292943 -91231635 + MIR3 SINE MIR 153 193 -15 558 263 34 34 chr3 136293021 136293196 -91231382 + MIR SINE MIR 86 260 -2 1922 138 10 10 chr3 136293626 136293916 -91230662 + AluSg SINE Alu 1 290 -20 24 0 0 0 chr3 136295102 136295126 -91229452 + AT_rich Low_complexity Low_complexity 1 24 0 1563 207 76 53 chr3 136296032 136296651 -91227927 + L1MC5 LINE L1 7310 7942 -19 1034 265 114 28 chr3 136296692 136297201 -91227377 - L1MC4a LINE L1 -1664 6144 5592 2310 68 3 0 chr3 136397766 136398058 -91126520 + AluSp SINE Alu 1 293 -20 185 233 0 0 chr3 136398116 136398159 -91126419 + L2 LINE L2 3266 3308 -5 21 0 0 31 chr3 136398303 136398320 -91126258 + AT_rich Low_complexity Low_complexity 1 18 -13 2212 92 0 0 chr3 136398320 136398612 -91125966 + AluSx SINE Alu 1 292 -20 21 0 0 31 chr3 136398612 136398626 -91125952 + AT_rich Low_complexity Low_complexity 18 31 0 343 275 211 32 chr3 136398631 136398882 -91125696 + L1MC4a LINE L1 5549 5844 -1964 770 189 0 0 chr3 136399223 136399355 -91125223 + FLAM_C SINE Alu 2 133 -10 186 238 295 0 chr3 136399372 136399477 -91125101 - MIR SINE MIR -25 237 102 1048 209 65 36 chr3 136399724 136400030 -91124548 + MER2 DNA MER2_type 6 320 -25 23 0 0 0 chr3 136400459 136400482 -91124096 + AT_rich Low_complexity Low_complexity 1 23 0 182 339 73 9 chr3 136401431 136401540 -91123038 + MIR SINE MIR 70 185 -77 346 269 9 56 chr3 136402544 136402652 -91121926 + Charlie8 DNA MER1_type 3 105 -2312 1951 113 3 0 chr3 136402654 136402959 -91121619 - AluSq SINE Alu 0 306 1 4458 201 20 10 chr3 136402961 136404509 -91120069 - L1MB4 LINE L1 -350 5830 4265 765 244 0 12 chr3 136404515 136404704 -91119874 - FRAM SINE Alu 0 176 1 1031 155 61 14 chr3 136404705 136404918 -91119660 - L1MB4 LINE L1 -1878 4268 4046 452 235 148 0 chr3 136405096 136405245 -91119333 - L1MC4 LINE L1 0 8042 7872 34 0 0 0 chr3 136405326 136405360 -91119218 + AT_rich Low_complexity Low_complexity 1 34 0 202 364 36 9 chr3 136405361 136405471 -91119107 - L2 LINE L2 -1262 2052 1940 1950 105 45 3 chr3 136405687 136405973 -91118605 - AluSx SINE Alu -14 298 1 1730 128 6 70 chr3 136406061 136406388 -91118190 - AluJb SINE Alu -6 306 1 308 233 35 12 chr3 136406490 136406576 -91118002 - L1MEd LINE L1 -6029 90 3 2380 69 0 3 chr3 136407558 136407861 -91116717 + AluY SINE Alu 1 302 -9 235 341 37 0 chr3 136407930 136408012 -91116566 + MIR SINE MIR 121 205 -57 242 339 17 0 chr3 136408612 136408698 -91115880 + MIR SINE MIR 61 150 -72 855 250 46 25 chr3 136408958 136409198 -91115380 - MIR SINE MIR 0 262 18 182 330 64 11 chr3 136409698 136409792 -91114786 + MIR SINE MIR 34 132 -76 322 270 103 16 chr3 136410232 136410358 -91114220 + L1ME LINE L1 2878 3014 -3132 5819 196 60 23 chr3 136410362 136411925 -91112653 + L1ME LINE L1 3828 5454 -716 1492 153 109 3 chr3 136412427 136412721 -91111857 + Tigger3(Golem) DNA MER2_type 1 325 -2704 1549 151 40 10 chr3 136412721 136413019 -91111559 - AluJb SINE Alu -5 307 1 1969 127 3 3 chr3 136413032 136413331 -91111247 - AluSx SINE Alu -13 299 1 523 114 0 0 chr3 136413333 136413403 -91111175 - AluSg SINE Alu -187 123 54 992 144 16 43 chr3 136413404 136413591 -91110987 - AluSx SINE Alu -125 187 6 336 275 101 7 chr3 136413924 136414062 -91110516 + MIR3 SINE MIR 9 159 -49 368 329 48 14 chr3 136416382 136416528 -91108050 - L2 LINE L2 0 3272 3122 1155 169 14 5 chr3 136417263 136417470 -91107108 - MER3 DNA MER1_type 0 209 1 341 351 255 5 chr3 136419310 136419518 -91105060 - MIR SINE MIR 0 262 3 345 197 102 75 chr3 136420064 136420211 -91104367 - MIR SINE MIR -1 261 111 271 206 0 22 chr3 136421004 136421096 -91103482 + GA-rich Low_complexity Low_complexity 2 91 0 390 361 57 31 chr3 136421391 136421635 -91102943 - MIR SINE MIR -12 250 4 285 195 85 0 chr3 136423360 136423442 -91101136 - L1ME4a LINE L1 -2 6119 6031 385 202 44 18 chr3 136423487 136423601 -91100977 - L1ME4a LINE L1 -233 5888 5772 245 213 244 47 chr3 136423689 136423816 -91100762 + MIR SINE MIR 111 262 0 395 293 7 7 chr3 136424048 136424188 -91100390 - L1ME4a LINE L1 -352 5769 5630 2564 30 0 3 chr3 136424195 136424496 -91100082 - AluY SINE Alu -11 300 1 307 387 17 0 chr3 136424592 136424711 -91099867 + L2 LINE L2 3118 3238 -34 275 217 123 37 chr3 136425234 136425336 -91099242 - MER113 DNA MER1_type? -76 445 353 737 229 115 43 chr3 136425336 136425659 -91098919 + MER7A DNA MER2_type 3 346 0 275 217 123 37 chr3 136425659 136425778 -91098800 - MER113 DNA MER1_type? -168 353 157 239 227 239 34 chr3 136426013 136426101 -91098477 + MIR SINE MIR 92 197 -65 1972 110 3 3 chr3 136426168 136426482 -91098096 - AluSx SINE Alu 0 314 1 547 100 50 0 chr3 136426584 136426664 -91097914 - U6 snRNA snRNA -23 84 1 1738 181 61 41 chr3 136427176 136427472 -91097106 - MLT1D LTR MaLR 0 505 198 1889 147 0 0 chr3 136427472 136427765 -91096813 - AluSx SINE Alu -17 295 3 1738 181 61 41 chr3 136427765 136427860 -91096718 - MLT1D LTR MaLR -307 198 106 959 110 0 14 chr3 136427861 136428007 -91096571 - AluSg/x SINE Alu -12 298 155 577 149 161 15 chr3 136428816 136428973 -91095605 + L1MC3 LINE L1 6887 7019 -766 324 195 46 11 chr3 136429006 136429093 -91095485 + MLT1F1 LTR MaLR 36 125 -442 2989 166 49 18 chr3 136429102 136429669 -91094909 + L1MC3 LINE L1 7201 7785 0 195 234 43 0 chr3 136431059 136431106 -91093472 + L2 LINE L2 114 162 -3152 606 343 103 8 chr3 136431398 136431757 -91092821 - L2 LINE L2 0 3313 2921 2136 105 3 0 chr3 136432733 136433029 -91091549 + AluSx SINE Alu 1 297 -15 338 321 22 66 chr3 136433037 136433174 -91091404 - MIR3 SINE MIR -48 160 29 845 262 110 21 chr3 136433265 136433743 -91090835 + MLT1K LTR MaLR 2 557 -31 12652 34 3 0 chr3 136434261 136436173 -91088405 - L1P1 LINE L1 -379 5776 3859 17454 44 5 1 chr3 136436319 136438501 -91086077 + L1P LINE L1 2124 4312 -1834 414 266 57 0 chr3 136439155 136439279 -91085299 - MIR SINE MIR -87 175 45 420 224 128 6 chr3 136439998 136440154 -91084424 - HAL1 LINE L1 -107 2400 2226 415 261 77 58 chr3 136440410 136440670 -91083908 + L2 LINE L2 2564 2828 -486 343 342 52 13 chr3 136441071 136441226 -91083352 - L3 LINE CR1 -894 683 523 2241 99 0 6 chr3 136441627 136441940 -91082638 + AluY SINE Alu 1 311 0 1774 157 20 0 chr3 136441971 136442265 -91082313 + AluSx SINE Alu 2 301 -11 338 255 128 27 chr3 136442648 136442797 -91081781 + MIR SINE MIR 81 244 -18 412 253 149 19 chr3 136443211 136443365 -91081213 + MIR SINE MIR 2 175 -87 23 0 0 0 chr3 136443469 136443492 -91081086 + AT_rich Low_complexity Low_complexity 1 23 0 294 374 118 0 chr3 136443813 136444000 -91080578 - MIR SINE MIR -48 214 6 475 194 11 0 chr3 136444753 136444846 -91079732 + L1ME4a LINE L1 5654 5747 -374 451 204 110 101 chr3 136444863 136445171 -91079407 + L1ME4a LINE L1 5802 6112 -9 345 306 73 0 chr3 136445973 136446097 -91078481 - MIR SINE MIR -107 155 23 1253 171 115 28 chr3 136446120 136446407 -91078171 + MER2 DNA MER2_type 33 344 -1 357 247 61 3 chr3 136447041 136447183 -91077395 + MIR SINE MIR 4 147 -61 304 58 19 19 chr3 136448109 136448161 -91076417 + (CA)n Simple_repeat Simple_repeat 2 53 0 22 0 0 0 chr3 136448355 136448377 -91076201 + AT_rich Low_complexity Low_complexity 1 22 0 2287 89 0 7 chr3 136448391 136448695 -91075883 + AluSx SINE Alu 1 302 -10 682 293 78 29 chr3 136449061 136449368 -91075210 - L2 LINE L2 0 3313 2992 216 0 0 0 chr3 136451315 136451339 -91073239 + (TGGGGG)n Simple_repeat Simple_repeat 4 27 0 813 121 9 0 chr3 136451591 136451707 -91072871 + AluSg/x SINE Alu 154 270 -40 245 326 226 13 chr3 136453206 136453436 -91071142 - L2 LINE L2 0 3272 2994 266 280 43 11 chr3 136453469 136453562 -91071016 - MIR SINE MIR -67 141 46 985 192 21 8 chr3 136453599 136453833 -91070745 - AluY SINE Alu -3 308 72 556 248 40 8 chr3 136453941 136454066 -91070512 + L2 LINE L2 3165 3293 -20 662 216 31 84 chr3 136454289 136454516 -91070062 - MIR SINE MIR -33 229 15 223 198 59 89 chr3 136455320 136455421 -91069157 + L3 LINE CR1 1324 1421 -156 237 111 0 28 chr3 136455818 136455854 -91068724 - MLT1D LTR MaLR -463 42 8 598 297 64 30 chr3 136455889 136456185 -91068393 - MLT1K LTR MaLR -255 333 28 180 262 0 0 chr3 136456252 136456294 -91068284 - MIR SINE MIR -171 91 50 346 287 76 16 chr3 136457118 136457342 -91067236 + MLT1K LTR MaLR 127 430 -158 307 270 169 28 chr3 136457516 136457694 -91066884 - L1MC4a LINE L1 -1882 5926 5724 202 262 0 33 chr3 136457695 136457756 -91066822 - L2 LINE L2 -249 3023 2965 392 231 90 36 chr3 136458366 136458569 -91066009 + MIR SINE MIR 16 230 -32 2256 71 0 19 chr3 136459819 136460128 -91064450 + AluY SINE Alu 1 303 -8 1070 160 163 28 chr3 136461238 136461520 -91063058 - MER33 DNA MER1_type 0 324 5 4196 150 56 40 chr3 136462668 136463132 -91061446 - L1MB8 LINE L1 -9 6169 5714 777 142 22 30 chr3 136463132 136463266 -91061312 - FLAM_C SINE Alu 0 133 1 4196 150 56 40 chr3 136463266 136464095 -91060483 - L1MB8 LINE L1 -464 5714 4856 712 179 45 15 chr3 136464278 136464412 -91060166 + MER20 DNA MER1_type 2 139 -80 2164 110 3 0 chr3 136465075 136465406 -91059172 - AluSx SINE Alu 0 332 1 624 293 22 56 chr3 136467447 136467679 -91056899 + L1ME3A LINE L1 5941 6164 0 416 247 86 25 chr3 136467781 136467943 -91056635 + MER5B DNA MER1_type 4 175 -3 21 0 0 0 chr3 136468789 136468810 -91055768 + AT_rich Low_complexity Low_complexity 1 21 0 2121 122 0 0 chr3 136468835 136469146 -91055432 - AluSx SINE Alu -1 311 1 5234 160 29 0 chr3 136469146 136469998 -91054580 - L1M1 LINE L1 -5148 2417 1541 23 68 0 0 chr3 136470139 136470183 -91054395 + GC_rich Low_complexity Low_complexity 1 44 0 22 56 0 0 chr3 136470189 136470225 -91054353 + GC_rich Low_complexity Low_complexity 1 36 0 669 284 219 29 chr3 136471527 136471987 -91052591 + L2 LINE L2 2768 3310 -3 251 348 0 0 chr3 136472992 136473061 -91051517 + MIR SINE MIR 51 119 -89 318 304 105 12 chr3 136473592 136473763 -91050815 - L2 LINE L2 -492 2822 2636 207 275 30 73 chr3 136473864 136474015 -91050563 - MIR3 SINE MIR -111 151 6 310 180 33 16 chr3 136474236 136474297 -91050281 - MIR SINE MIR -3 259 198 399 288 22 43 chr3 136474545 136474684 -91049894 - MIR SINE MIR -106 156 21 298 266 226 8 chr3 136474730 136474854 -91049724 + MIR3 SINE MIR 58 208 0 502 43 14 0 chr3 136475038 136475108 -91049470 - AluSp/q SINE Alu -7 306 236 2594 214 29 6 chr3 136476790 136477797 -91046781 - L1 LINE L1 -2553 3593 2296 662 265 82 41 chr3 136477924 136478027 -91046551 - L1MC4a LINE L1 -1929 5879 5782 2370 87 3 6 chr3 136478027 136478338 -91046240 - AluSg SINE Alu 0 310 1 662 265 82 41 chr3 136478338 136478551 -91046027 - L1MC4a LINE L1 -2026 5782 5550 2258 114 7 0 chr3 136478694 136479001 -91045577 - AluSc SINE Alu 0 309 1 334 219 137 0 chr3 136479397 136479470 -91045108 - MIR3 SINE MIR -42 166 84 241 245 0 0 chr3 136480989 136481042 -91043536 + CT-rich Low_complexity Low_complexity 4 56 0 319 359 6 17 chr3 136481070 136481251 -91043327 + C-rich Low_complexity Low_complexity 1 179 0 767 206 56 39 chr3 136481759 136481939 -91042639 + AluJb SINE Alu 115 297 -15 319 187 13 27 chr3 136481950 136482025 -91042553 + LTR37A LTR ERV1 297 370 -56 234 266 70 16 chr3 136482101 136482229 -91042349 + L1MB8 LINE L1 5813 5947 -231 862 216 31 0 chr3 136482494 136482656 -91041922 + AluJo SINE Alu 5 171 -141 475 177 0 0 chr3 136482656 136482735 -91041843 - AluSp/q SINE Alu -51 252 174 204 290 43 43 chr3 136483848 136483917 -91040661 + MIR SINE MIR 32 100 -162 3871 115 10 10 chr3 136484255 136484865 -91039713 - L1M1 LINE L1 -4111 3454 2845 1951 127 3 3 chr3 136484866 136485172 -91039406 - AluSx SINE Alu 0 306 1 978 173 6 22 chr3 136485187 136485366 -91039212 + FRAM SINE Alu 1 168 -8 794 194 0 0 chr3 136485407 136485536 -91039042 + FLAM_A SINE Alu 2 130 -3 29 0 0 0 chr3 136485647 136485676 -91038902 + AT_rich Low_complexity Low_complexity 1 29 0 1232 191 40 0 chr3 136485887 136486159 -91038419 - L1M4 LINE L1 -3129 3017 2735 187 148 0 0 chr3 136486513 136486540 -91038038 + L2 LINE L2 3262 3288 -25 1736 239 60 21 chr3 136486541 136487027 -91037551 + MLT1J LTR MaLR 4 508 -3 738 192 20 33 chr3 136487039 136487190 -91037388 + AluJo SINE Alu 2 150 -162 1366 236 63 8 chr3 136487295 136487677 -91036901 + L1M4 LINE L1 4110 4512 -1634 810 196 33 0 chr3 136487684 136487837 -91036741 + AluJo SINE Alu 144 301 -11 538 209 286 15 chr3 136487839 136488035 -91036543 + MER46C DNA MER2_type 1 249 -89 22 70 0 0 chr3 136488066 136488109 -91036469 + AT_rich Low_complexity Low_complexity 1 43 0 440 139 0 76 chr3 136488211 136488290 -91036288 - AluSp/q SINE Alu -5 308 236 303 131 16 66 chr3 136488292 136488353 -91036225 - L1MB7 LINE L1 -261 5923 5866 560 198 0 10 chr3 136488354 136488450 -91036128 - FRAM SINE Alu -19 157 63 358 302 8 23 chr3 136488697 136488826 -91035752 - MER5B DNA MER1_type -1 177 51 383 287 16 8 chr3 136489937 136490066 -91034512 - Charlie8 DNA MER1_type -2152 265 136 711 186 73 25 chr3 136490218 136490435 -91034143 + MLT1A2 LTR MaLR 1 215 -150 530 119 0 0 chr3 136490638 136490705 -91033873 + AluS SINE Alu 2 68 -245 428 101 53 24 chr3 136490712 136490881 -91033697 + (TA)n Simple_repeat Simple_repeat 1 174 0 409 41 103 14 chr3 136490937 136491082 -91033496 + (TA)n Simple_repeat Simple_repeat 2 159 0 2007 142 0 3 chr3 136491372 136491668 -91032910 - AluJb SINE Alu -17 295 1 216 270 22 22 chr3 136493352 136493441 -91031137 - MIR SINE MIR -78 130 42 6722 116 16 1 chr3 136494078 136495048 -91029530 + Tigger1 DNA MER2_type 1434 2417 -1 758 285 97 51 chr3 136495745 136496304 -91028274 - L2 LINE L2 -5 3308 2712 270 151 19 0 chr3 136496466 136496519 -91028059 - L1MC/D LINE L1 -859 5474 5421 259 283 0 4 chr3 136496538 136496653 -91027925 + L2 LINE L2 2634 2796 -518 306 266 0 0 chr3 136496676 136496804 -91027774 + (CA)n Simple_repeat Simple_repeat 1 128 0 212 266 0 11 chr3 136496826 136496920 -91027658 + (CA)n Simple_repeat Simple_repeat 1 93 0 258 241 0 0 chr3 136496947 136497034 -91027544 + (CA)n Simple_repeat Simple_repeat 1 87 0 366 173 0 0 chr3 136497078 136497153 -91027425 + (CA)n Simple_repeat Simple_repeat 2 76 0 502 262 200 10 chr3 136497153 136497518 -91027060 + L2 LINE L2 2819 3297 -16 6166 59 2 5 chr3 136497714 136498616 -91025962 - L1PA5 LINE L1 -145 6009 5110 487 200 0 33 chr3 136498628 136498808 -91025770 + C-rich Low_complexity Low_complexity 5 178 0 260 320 20 20 chr3 136498821 136498974 -91025604 + C-rich Low_complexity Low_complexity 1 153 0 238 121 17 17 chr3 136498989 136499047 -91025531 + C-rich Low_complexity Low_complexity 3 60 0 180 0 0 0 chr3 136499271 136499291 -91025287 + (TTTC)n Simple_repeat Simple_repeat 1 20 0 2046 132 6 35 chr3 136499293 136499612 -91024966 - AluSx SINE Alu -2 310 1 186 36 0 36 chr3 136500377 136500405 -91024173 + L2 LINE L2 2593 2619 -695 2893 218 38 9 chr3 136500405 136501044 -91023534 - L1ME1 LINE L1 -27 6139 5483 822 164 0 8 chr3 136501052 136501186 -91023392 - FRAM SINE Alu -10 166 34 373 369 7 7 chr3 136502179 136502320 -91022258 - MIR SINE MIR -102 160 20 22038 41 1 1 chr3 136503026 136506336 -91018242 - L1PA5 LINE L1 -1 6153 2829 2140 136 0 0 chr3 136506568 136506869 -91017709 + AluSx SINE Alu 1 301 -11 1099 111 5 63 chr3 136507029 136507218 -91017360 - MER39 LTR ERV1 0 707 530 1291 215 14 11 chr3 136507261 136507540 -91017038 - MER39 LTR ERV1 -164 543 264 1178 174 94 26 chr3 136508391 136508656 -91015922 - MER2 DNA MER2_type -5 340 58 810 151 14 22 chr3 136509460 136509599 -91014979 + AluSg/x SINE Alu 153 290 -20 697 266 78 16 chr3 136509970 136510289 -91014289 + MER58B DNA MER1_type 3 341 0 305 333 45 18 chr3 136510489 136510600 -91013978 + L2 LINE L2 3139 3252 -20 826 258 48 19 chr3 136511868 136512012 -91012566 - MLT1B LTR MaLR -59 331 174 234 0 0 0 chr3 136512012 136512038 -91012540 + (TG)n Simple_repeat Simple_repeat 2 27 0 826 258 48 19 chr3 136512038 136512161 -91012417 - MLT1B LTR MaLR -216 174 56 763 194 42 30 chr3 136512763 136512928 -91011650 + FAM SINE Alu 4 170 -5 1781 167 46 75 chr3 136513086 136513540 -91011038 - MLT1D LTR MaLR -13 492 52 342 255 125 72 chr3 136513602 136513963 -91010615 - L1MC5 LINE L1 -33 7928 7549 319 318 8 23 chr3 136514357 136514486 -91010092 + MER5B DNA MER1_type 51 177 -1 291 239 34 45 chr3 136514855 136514943 -91009635 + L2 LINE L2 3227 3313 0 517 276 98 0 chr3 136515611 136515825 -91008753 + L1PB2 LINE L1 2952 3186 -2960 44384 44 1 1 chr3 136515834 136521975 -91002603 + L1PA3 LINE L1 9 6147 -8 6246 223 14 15 chr3 136521953 136523532 -91001046 + L1PB2 LINE L1 3153 4729 -1417 * 386 136 41 82 chr3 136523513 136523641 -91000937 + L1PB4 LINE L1 5677 5792 -376 * 230 143 0 0 chr3 136523721 136523763 -91000815 - LTR66 LTR ERVL -171 439 398 189 214 0 0 chr3 136523777 136523819 -91000759 + (TA)n Simple_repeat Simple_repeat 2 43 0 228 274 0 0 chr3 136523828 136523879 -91000699 + (TG)n Simple_repeat Simple_repeat 1 51 0 1907 127 25 102 chr3 136523879 136524282 -91000296 + L1PB4 LINE L1 5777 6148 -8 4522 228 61 33 chr3 136524749 136525757 -90998821 + L1M2c LINE L1 2571 3550 -4015 5893 108 36 14 chr3 136525757 136526943 -90997635 + L1PB2 LINE L1 4929 6144 -7 4522 228 61 33 chr3 136526943 136528028 -90996550 + L1M2c LINE L1 3550 4687 -2878 30320 92 4 11 chr3 136528096 136534243 -90990335 + L1PA6 LINE L1 13 6147 -7 28 91 0 0 chr3 136534392 136534469 -90990109 + AT_rich Low_complexity Low_complexity 1 77 0 918 251 63 7 chr3 136534504 136534807 -90989771 + L1ME3A LINE L1 5757 6076 -94 1069 225 39 45 chr3 136535049 136535360 -90989218 + MLT1I LTR MaLR 85 393 -16 497 246 168 43 chr3 136535557 136535813 -90988765 + MLT1K LTR MaLR 321 581 -7 221 167 0 139 chr3 136535875 136535947 -90988631 - MIR SINE MIR 0 262 201 773 126 67 0 chr3 136536022 136536141 -90988437 - FLAM_C SINE Alu -12 131 5 284 176 0 73 chr3 136537831 136537899 -90986679 + L2 LINE L2 3210 3272 0 540 226 96 57 chr3 136538125 136538334 -90986244 + MIR SINE MIR 6 219 -43 290 279 35 86 chr3 136539007 136539204 -90985374 + MER5A DNA MER1_type 3 189 0 245 148 0 19 chr3 136539360 136539414 -90985164 + (TTCC)n Simple_repeat Simple_repeat 1 53 0 560 257 13 46 chr3 136539974 136540126 -90984452 - MIR SINE MIR -114 148 2 580 240 16 0 chr3 136540369 136540498 -90984080 + MIR3 SINE MIR 30 160 -48 534 231 159 53 chr3 136540624 136540832 -90983746 - MIR SINE MIR 0 262 33 1814 292 83 20 chr3 136541802 136542551 -90982027 + L3 LINE CR1 673 1468 -109 2062 133 3 31 chr3 136542875 136543192 -90981386 - AluSx SINE Alu -4 308 1 27 0 0 0 chr3 136543315 136543342 -90981236 + AT_rich Low_complexity Low_complexity 1 27 0 2100 113 6 38 chr3 136543414 136543733 -90980845 + AluSg SINE Alu 1 309 -1 2998 203 63 2 chr3 136543934 136544550 -90980028 - MER21B LTR ERV1 -31 832 179 830 144 0 0 chr3 136544578 136544696 -90979882 - FLAM_C SINE Alu -15 118 1 431 253 258 5 chr3 136544782 136544976 -90979602 + MIR SINE MIR 12 254 -8 316 200 191 0 chr3 136545004 136545109 -90979469 - L1ME4a LINE L1 -40 6081 5957 22 0 0 0 chr3 136545797 136545819 -90978759 + AT_rich Low_complexity Low_complexity 1 22 0 200 257 9 38 chr3 136545972 136546077 -90978501 + GA-rich Low_complexity Low_complexity 3 104 0 260 260 0 0 chr3 136546631 136546708 -90977870 + GA-rich Low_complexity Low_complexity 1 77 0 677 97 10 0 chr3 136547741 136547844 -90976734 + (GAA)n Simple_repeat Simple_repeat 1 104 0 749 265 34 97 chr3 136549861 136550386 -90974192 - MLT1J LTR MaLR -19 492 1 2181 121 48 25 chr3 136550615 136550971 -90973607 + THE1B LTR MaLR 1 364 0 297 302 39 93 chr3 136551343 136551525 -90973053 + MIR3 SINE MIR 6 177 -31 526 221 52 0 chr3 136553254 136553390 -90971188 + MIR SINE MIR 114 256 -6 27 0 0 0 chr3 136554030 136554057 -90970521 + AT_rich Low_complexity Low_complexity 1 27 0 1962 137 0 24 chr3 136554057 136554350 -90970228 - AluJb SINE Alu -26 286 1 520 278 65 82 chr3 136554422 136554774 -90969804 + L2 LINE L2 2616 2961 -353 274 261 35 17 chr3 136555038 136555153 -90969425 + LTR16B LTR ERVL 189 305 -159 215 345 58 23 chr3 136555238 136555412 -90969166 + L2 LINE L2 3125 3304 -9 328 195 110 0 chr3 136555441 136555523 -90969055 - MIR SINE MIR -81 181 91 198 300 190 20 chr3 136555670 136555770 -90968808 + L2 LINE L2 3154 3270 -2 263 254 203 72 chr3 136556049 136556187 -90968391 - MIR3 SINE MIR -22 186 31 182 311 10 68 chr3 136556987 136557090 -90967488 - MIR SINE MIR -83 125 29 25 31 0 0 chr3 136557331 136557363 -90967215 + AT_rich Low_complexity Low_complexity 1 32 0 340 327 62 99 chr3 136557907 136558179 -90966399 - L2 LINE L2 -10 3262 3001 2179 49 3 14 chr3 136558409 136558694 -90965884 - L1PA8 LINE L1 -14 6158 5877 1131 201 47 0 chr3 136558982 136559196 -90965382 - MER58A DNA MER1_type 0 224 1 2156 125 7 0 chr3 136559375 136559670 -90964908 + AluSx SINE Alu 1 297 -15 1152 239 85 45 chr3 136559829 136560277 -90964301 + MLT1J LTR MaLR 1 466 -45 2223 118 3 0 chr3 136560321 136560626 -90963952 - AluSg SINE Alu -4 306 1 1494 282 94 8 chr3 136562044 136562535 -90962043 - L2 LINE L2 -1 3312 2781 540 220 153 28 chr3 136562586 136562763 -90961815 + MIR SINE MIR 18 216 -46 259 231 17 86 chr3 136562763 136562880 -90961698 + MER58B DNA MER1_type 1 109 -232 260 128 0 0 chr3 136562910 136562949 -90961629 - MER57A LTR ERV1 -64 339 301 996 217 0 26 chr3 136562954 136563184 -90961394 + MER58B DNA MER1_type 118 341 0 1255 263 106 26 chr3 136563335 136563831 -90960747 + L2 LINE L2 2781 3313 0 1626 197 3 20 chr3 136565262 136565557 -90959021 - AluJb SINE Alu -22 290 1 379 237 11 0 chr3 136567017 136567110 -90957468 - MIR SINE MIR 0 262 169 278 198 12 25 chr3 136567407 136567488 -90957090 + (TA)n Simple_repeat Simple_repeat 2 81 0 2050 84 30 0 chr3 136567798 136568060 -90956518 + AluSp SINE Alu 1 270 -43 224 59 29 0 chr3 136568061 136568095 -90956483 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 203 304 9 80 chr3 136569581 136569693 -90954885 - L2 LINE L2 -18 3295 3192 278 243 81 14 chr3 136569834 136569908 -90954670 + MIR SINE MIR 62 140 -68 617 259 43 83 chr3 136569961 136570262 -90954316 - L2 LINE L2 -16 3297 3009 2195 163 37 10 chr3 136570363 136570763 -90953815 - LTR39 LTR ERV1 0 783 373 1461 70 0 15 chr3 136570763 136570963 -90953615 + MER107 DNA MER1_type 1 197 0 2276 113 8 42 chr3 136570964 136571346 -90953232 - LTR39 LTR ERV1 -414 369 1 880 169 119 0 chr3 136571424 136571667 -90952911 + MER33 DNA MER1_type 7 278 -46 756 191 0 0 chr3 136571677 136571803 -90952775 - FLAM_C SINE Alu -17 126 1 276 308 23 23 chr3 136572626 136572756 -90951822 - L3b LINE CR1 -143 1440 1311 284 219 0 31 chr3 136572756 136572820 -90951758 + C-rich Low_complexity Low_complexity 4 65 0 771 134 29 12 chr3 136572820 136572991 -90951587 + CT-rich Low_complexity Low_complexity 2 175 0 192 224 94 35 chr3 136572994 136573079 -90951499 - L3b LINE CR1 -280 1303 1214 451 320 32 32 chr3 136573956 136574112 -90950466 + L2 LINE L2 3117 3272 0 223 263 25 0 chr3 136574319 136574399 -90950179 + (TATATG)n Simple_repeat Simple_repeat 1 82 0 1961 150 3 10 chr3 136575270 136575577 -90949001 - AluJb SINE Alu -7 305 1 636 189 141 5 chr3 136575610 136575771 -90948807 - MER5A DNA MER1_type 0 189 4 2890 142 39 4 chr3 136576982 136577516 -90947062 + L1MA8 LINE L1 5739 6291 0 275 323 101 16 chr3 136577557 136577746 -90946832 + L2 LINE L2 2932 3136 -177 1984 140 31 0 chr3 136577789 136578082 -90946496 - AluSx SINE Alu -10 302 1 1008 111 0 0 chr3 136578082 136578217 -90946361 - AluSq/x SINE Alu -178 135 1 248 174 0 0 chr3 136578338 136578384 -90946194 + L2 LINE L2 3265 3310 -3 1604 276 40 20 chr3 136579293 136579888 -90944690 + L1ME3A LINE L1 5544 6150 -20 29 0 0 0 chr3 136579901 136579930 -90944648 + AT_rich Low_complexity Low_complexity 1 29 0 227 183 32 32 chr3 136580085 136580178 -90944400 + GA-rich Low_complexity Low_complexity 2 94 0 2051 113 3 27 chr3 136580885 136581186 -90943392 - AluSg SINE Alu -16 294 1 225 250 217 22 chr3 136581369 136581461 -90943117 - MIR3 SINE MIR -28 180 71 21 0 0 0 chr3 136581818 136581839 -90942739 + AT_rich Low_complexity Low_complexity 1 21 0 405 220 46 77 chr3 136582214 136582406 -90942172 - MIR SINE MIR -66 142 3 2364 79 0 19 chr3 136582992 136583307 -90941271 - AluSc SINE Alu 0 309 1 237 250 135 10 chr3 136583776 136583872 -90940706 - MIR SINE MIR -87 175 68 1510 262 134 53 chr3 136583983 136585736 -90938842 - HAL1 LINE L1 0 2507 418 248 326 43 0 chr3 136585766 136585858 -90938720 - HAL1 LINE L1 -2154 353 258 231 240 93 40 chr3 136585996 136586071 -90938507 - HAL1 LINE L1 -2419 88 10 1018 289 116 5 chr3 136586074 136586479 -90938099 - LTR16A LTR ERVL 0 450 1 4112 182 71 15 chr3 136586507 136587633 -90936945 - L1MB8 LINE L1 -6 6172 5004 350 174 163 11 chr3 136588184 136588276 -90936302 - L1MB8 LINE L1 -1130 5016 4911 261 336 23 23 chr3 136588428 136588559 -90936019 - L3 LINE CR1 -925 652 522 * 316 353 15 30 chr3 136588554 136588687 -90935891 - L2 LINE L2 -8 3264 3134 287 347 159 15 chr3 136588705 136588976 -90935602 - L3 LINE CR1 -1057 520 211 228 172 0 138 chr3 136590997 136591055 -90933523 - L3 LINE CR1 -2 1575 1526 808 221 39 0 chr3 136592078 136592232 -90932346 - MER5B DNA MER1_type 0 178 19 313 343 27 89 chr3 136592596 136592888 -90931690 + L2 LINE L2 2995 3268 -4 234 276 182 69 chr3 136593048 136593367 -90931211 - L2 LINE L2 -362 2952 2598 1588 182 73 14 chr3 136593414 136593592 -90930986 + MLT1B LTR MaLR 1 167 -223 234 0 0 0 chr3 136593592 136593618 -90930960 + (CA)n Simple_repeat Simple_repeat 2 27 0 1588 182 73 14 chr3 136593618 136593807 -90930771 + MLT1B LTR MaLR 167 390 0 524 309 115 5 chr3 136595536 136595727 -90928851 + MIR SINE MIR 1 212 -50 234 0 0 0 chr3 136596082 136596108 -90928470 + (A)n Simple_repeat Simple_repeat 1 26 0 1833 248 39 31 chr3 136597104 136597621 -90926957 + LTR33 LTR ERVL 1 521 0 870 289 21 30 chr3 136597865 136598100 -90926478 + MIR SINE MIR 30 262 0 496 242 106 96 chr3 136598397 136598699 -90925879 + L2 LINE L2 3002 3306 -7 208 209 93 0 chr3 136598860 136598903 -90925675 + MIR SINE MIR 209 255 -7 954 186 64 6 chr3 136599658 136599830 -90924748 + MER5A DNA MER1_type 2 183 -6 371 263 88 35 chr3 136599847 136599961 -90924617 + MER117 DNA MER1_type 70 189 -8 387 369 7 7 chr3 136600909 136601050 -90923528 - MIR SINE MIR -102 160 20 7231 50 0 1 chr3 136601756 136603417 -90921161 - L1PA5 LINE L1 -1 6153 4480 38 75 0 0 chr3 136603509 136603589 -90920989 + AT_rich Low_complexity Low_complexity 1 80 0 419 113 14 0 chr3 136603932 136604003 -90920575 + (GA)n Simple_repeat Simple_repeat 1 72 0 2485 162 89 0 chr3 136605051 136605476 -90919102 - MLT1C LTR MaLR 0 467 5 2028 206 23 41 chr3 136605709 136606223 -90918355 + MLT1D LTR MaLR 1 505 0 709 267 68 32 chr3 136606401 136606622 -90917956 + MIR SINE MIR 34 262 0 1721 169 16 13 chr3 136606691 136606998 -90917580 - AluJb SINE Alu -4 308 1 1941 50 0 0 chr3 136607481 136607720 -90916858 - L1PA6 LINE L1 -252 5902 5664 1878 60 4 0 chr3 136607722 136607957 -90916621 + L1PA6 LINE L1 5908 6143 -11 355 313 116 42 chr3 136609607 136610126 -90914452 + L2 LINE L2 2485 3040 -232 692 218 79 50 chr3 136610146 136610487 -90914091 + MLT1J2 LTR MaLR 20 437 -13 363 348 32 32 chr3 136610521 136610679 -90913899 + L2 LINE L2 3108 3265 -7 185 196 18 0 chr3 136611277 136611333 -90913245 + GA-rich Low_complexity Low_complexity 2 58 0 506 315 59 57 chr3 136611662 136612100 -90912478 + MLT1L LTR MaLR 142 580 -35 464 211 0 11 chr3 136612377 136612467 -90912111 - MER4C LTR ERV1 0 465 377 1194 117 6 0 chr3 136612475 136612638 -90911940 + AluSp SINE Alu 122 285 -28 939 43 0 0 chr3 136612638 136612754 -90911824 + (CAAAG)n Simple_repeat Simple_repeat 2 117 0 387 222 37 9 chr3 136612787 136612895 -90911683 - MER4C LTR ERV1 -79 386 276 * 494 220 84 18 chr3 136612890 136613063 -90911515 - MER4C LTR ERV1 -167 532 165 * 2049 129 6 49 chr3 136613031 136613396 -90911182 - MER4A LTR ERV1 -315 349 1 4599 146 88 7 chr3 136613568 136614383 -90910195 - MER4D LTR ERV1 -22 881 1 340 252 120 48 chr3 136614625 136614793 -90909785 + MIR SINE MIR 5 182 -65 1394 62 0 0 chr3 136614815 136614991 -90909587 + L1PA5 LINE L1 5979 6154 0 838 158 72 0 chr3 136615707 136615846 -90908732 + FRAM SINE Alu 1 146 -30 792 244 49 78 chr3 136616254 136616599 -90907979 + Charlie8 DNA MER1_type 78 412 -2005 641 323 66 80 chr3 136618140 136618669 -90905909 - L2 LINE L2 0 3272 2737 641 233 0 0 chr3 136618693 136618813 -90905765 - FLAM_A SINE Alu -13 120 1 24 67 0 0 chr3 136619458 136619503 -90905075 + AT_rich Low_complexity Low_complexity 1 45 0 11092 126 8 11 chr3 136620047 136622597 -90901981 + L1PA10 LINE L1 3615 6166 -2 240 200 17 33 chr3 136623262 136623322 -90901256 + LTR67 LTR ERVL 478 536 -21 711 303 70 35 chr3 136623405 136623771 -90900807 + MLT1I LTR MaLR 21 450 0 2467 60 0 25 chr3 136623977 136624295 -90900283 + AluY SINE Alu 1 310 -1 22 0 0 0 chr3 136624322 136624344 -90900234 + AT_rich Low_complexity Low_complexity 1 22 0 443 322 171 24 chr3 136624916 136625208 -90899370 + L3 LINE CR1 429 763 -814 * 4358 253 109 70 chr3 136625197 136626315 -90898263 + L2 LINE L2 492 1564 -1750 360 0 0 0 chr3 136626315 136626355 -90898223 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 4358 253 109 70 chr3 136626355 136626790 -90897788 + L2 LINE L2 1564 1980 -1334 243 0 0 0 chr3 136626790 136626817 -90897761 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 4358 253 109 70 chr3 136626817 136627066 -90897512 + L2 LINE L2 1980 2374 -940 1631 68 9 5 chr3 136627066 136627288 -90897290 + L1PA7 LINE L1 5932 6154 0 4358 253 109 70 chr3 136627288 136627362 -90897216 + L2 LINE L2 2374 2444 -870 516 301 55 10 chr3 136627536 136627735 -90896843 + L3 LINE CR1 1080 1287 -290 186 43 0 0 chr3 136627899 136627922 -90896656 + (TC)n Simple_repeat Simple_repeat 2 24 0 777 191 35 12 chr3 136628504 136628677 -90895901 - MER5B DNA MER1_type 0 178 2 242 341 30 45 chr3 136628737 136628869 -90895709 + L3 LINE CR1 1447 1576 -1 21 36 0 0 chr3 136629575 136629603 -90894975 + AT_rich Low_complexity Low_complexity 1 28 0 2407 119 5 22 chr3 136629884 136630254 -90894324 - THE1B LTR MaLR 0 364 1 1867 294 115 39 chr3 136630537 136631668 -90892910 - L2 LINE L2 -788 2526 1310 192 359 26 8 chr3 136631935 136632052 -90892526 - L2 LINE L2 -1205 2109 1991 278 272 11 54 chr3 136632255 136632347 -90892231 + L2 LINE L2 3225 3312 -1 352 263 0 71 chr3 136632430 136632529 -90892049 - L2 LINE L2 -1 3312 3221 27 62 0 0 chr3 136632901 136632949 -90891629 + AT_rich Low_complexity Low_complexity 1 48 0 848 238 79 0 chr3 136633756 136633983 -90890595 - MIR SINE MIR 0 262 18 21 0 0 0 chr3 136634113 136634134 -90890444 + AT_rich Low_complexity Low_complexity 1 21 0 199 315 11 56 chr3 136635273 136635362 -90889216 + MIR3 SINE MIR 124 208 0 571 256 22 17 chr3 136635680 136635910 -90888668 + L1ME4a LINE L1 5676 5906 -215 43194 47 2 1 chr3 136636221 136642371 -90882207 - L1PA4 LINE L1 0 6155 1 278 236 18 0 chr3 136642449 136642504 -90882074 - L3 LINE CR1 -9 1568 1513 621 274 22 58 chr3 136643919 136644094 -90880484 + MIR SINE MIR 28 195 -67 1996 115 14 0 chr3 136644094 136644380 -90880198 - AluSg SINE Alu -20 290 1 621 274 22 58 chr3 136644380 136644427 -90880151 + MIR SINE MIR 195 242 -20 1878 183 15 52 chr3 136644459 136644864 -90879714 + MLT1B LTR MaLR 1 390 0 659 251 94 43 chr3 136644962 136645197 -90879381 + MIR SINE MIR 16 262 0 280 273 0 15 chr3 136645971 136646037 -90878541 - L2 LINE L2 -3 3269 3205 22 0 0 0 chr3 136646762 136646784 -90877794 + AT_rich Low_complexity Low_complexity 1 22 0 263 340 52 0 chr3 136646981 136647078 -90877500 + MIR SINE MIR 30 131 -77 182 136 51 17 chr3 136647101 136647160 -90877418 + GA-rich Low_complexity Low_complexity 5 65 0 23 0 0 0 chr3 136648160 136648183 -90876395 + GC_rich Low_complexity Low_complexity 1 23 0 213 65 0 0 chr3 136648434 136648465 -90876113 + (TG)n Simple_repeat Simple_repeat 2 32 0 237 98 0 0 chr3 136648467 136648508 -90876070 + (GA)n Simple_repeat Simple_repeat 1 41 0 332 362 0 0 chr3 136648757 136648906 -90875672 + G-rich Low_complexity Low_complexity 1 149 0 401 335 12 29 chr3 136651378 136651569 -90873009 + MIR3 SINE MIR 5 138 -70 303 390 76 20 chr3 136652077 136652328 -90872250 + L2 LINE L2 2493 2757 -557 212 419 25 6 chr3 136652897 136653057 -90871521 + L2 LINE L2 2892 3054 -218 358 302 8 23 chr3 136653313 136653442 -90871136 + MER5B DNA MER1_type 51 177 -1 354 260 83 0 chr3 136653799 136653895 -90870683 + L2 LINE L2 3210 3313 0 2386 88 0 0 chr3 136656312 136656618 -90867960 - AluSq SINE Alu -6 307 2 21 0 0 0 chr3 136656690 136656711 -90867867 + AT_rich Low_complexity Low_complexity 1 21 0 760 170 42 30 chr3 136657570 136657735 -90866843 + FAM SINE Alu 4 170 -5 1829 182 34 66 chr3 136657882 136658354 -90866224 - MLT1D LTR MaLR -2 503 47 596 236 97 81 chr3 136658393 136658775 -90865803 - L1MC5 LINE L1 -29 7932 7545 21 0 0 0 chr3 136659193 136659214 -90865364 + AT_rich Low_complexity Low_complexity 1 21 0 8129 191 42 10 chr3 136660385 136663944 -90860634 - L1MA4 LINE L1 -11 7708 3974 2287 53 3 3 chr3 136664714 136665027 -90859551 - AluY SINE Alu 0 313 1 5041 209 39 22 chr3 136665277 136666943 -90857635 - L1MA4 LINE L1 -3598 3967 2265 2098 142 0 0 chr3 136666943 136667253 -90857325 - AluY SINE Alu -1 310 1 5041 209 39 22 chr3 136667253 136667293 -90857285 - L1MA4 LINE L1 -5300 2265 2227 3269 174 16 2 chr3 136667291 136667859 -90856719 - L1MA4 LINE L1 -4752 1813 1238 * 1029 206 73 73 chr3 136668090 136668282 -90856296 - L1ME2 LINE L1 -11 6153 5962 2129 131 0 0 chr3 136668282 136668580 -90855998 - AluSg SINE Alu -12 298 1 1029 206 73 73 chr3 136668580 136668659 -90855919 - L1ME2 LINE L1 -202 5962 5884 342 0 0 0 chr3 136668659 136668697 -90855881 + (TG)n Simple_repeat Simple_repeat 2 39 0 1029 206 73 73 chr3 136668697 136668778 -90855800 - L1ME2 LINE L1 -279 5885 5800 1584 213 40 39 chr3 136668897 136669393 -90855185 - MER89 LTR ERV1 0 559 3 289 311 109 30 chr3 136669423 136669690 -90854888 - L1ME4a LINE L1 -215 5906 5619 257 284 74 28 chr3 136669794 136669970 -90854608 - L1ME4a LINE L1 -2337 5471 5288 465 167 0 0 chr3 136670198 136670276 -90854302 + MLT1B LTR MaLR 313 390 0 365 319 48 57 chr3 136670382 136670630 -90853948 - HAL1b LINE L1 -689 659 414 1607 262 110 36 chr3 136671062 136671589 -90852989 - MER90 LTR ERV1 -5 570 5 321 302 0 0 chr3 136671761 136671847 -90852731 + MER89 LTR ERV1 165 250 -309 2053 157 9 9 chr3 136671905 136672250 -90852328 - MER7A DNA MER2_type 0 346 4 5339 28 9 0 chr3 136672596 136673232 -90851346 + L1PA4 LINE L1 5514 6155 0 245 279 0 0 chr3 136674086 136674154 -90850424 + T-rich Low_complexity Low_complexity 1 68 0 3520 190 77 16 chr3 136674235 136676630 -90847948 - L1MCb LINE L1 -3210 3216 594 1250 81 9 8 chr3 136676641 136676863 -90847715 - AluY SINE Alu -19 292 1 2711 179 14 108 chr3 136676866 136677735 -90846843 - L1MCa LINE L1 -5319 759 29 242 292 111 0 chr3 136678033 136678177 -90846401 - L1ME4a LINE L1 -2 6119 5960 21 0 0 0 chr3 136678279 136678300 -90846278 + AT_rich Low_complexity Low_complexity 1 21 0 493 291 45 6 chr3 136678358 136678537 -90846041 - L1ME4a LINE L1 -382 5739 5554 407 249 69 104 chr3 136678761 136678798 -90845780 + MIR SINE MIR 72 109 -153 1772 160 3 10 chr3 136678798 136679105 -90845473 - AluJo SINE Alu -7 305 1 407 249 69 104 chr3 136679105 136679240 -90845338 + MIR SINE MIR 109 238 -24 491 240 133 7 chr3 136679853 136680003 -90844575 - MIR3 SINE MIR -6 202 34 22 70 0 0 chr3 136681620 136681663 -90842915 + AT_rich Low_complexity Low_complexity 1 43 0 366 300 132 7 chr3 136682742 136683029 -90841549 - L1ME4a LINE L1 -1968 4178 3856 260 330 9 9 chr3 136683543 136683655 -90840923 - L1ME4a LINE L1 -2323 3823 3712 224 195 0 0 chr3 136683892 136683933 -90840645 + CT-rich Low_complexity Low_complexity 2 42 0 438 187 73 40 chr3 136683949 136684099 -90840479 + HAL1 LINE L1 1932 2086 -421 617 211 128 57 chr3 136684137 136684435 -90840143 + HAL1 LINE L1 2189 2507 0 23 0 0 0 chr3 136685333 136685356 -90839222 + AT_rich Low_complexity Low_complexity 1 23 0 313 321 55 66 chr3 136685645 136686009 -90838569 - MER65A LTR ERV1 -85 360 1 1011 316 112 17 chr3 136686168 136686634 -90837944 - MLT1J LTR MaLR -1 510 1 257 360 34 0 chr3 136686798 136686887 -90837691 + LTR33A LTR ERVL 71 162 -361 4476 176 33 26 chr3 136687481 136688435 -90836143 - L1MB8 LINE L1 -15 6163 5210 6060 137 6 15 chr3 136688435 136689899 -90834679 - L1PB2 LINE L1 -2 6149 4696 2207 209 9 46 chr3 136689907 136690022 -90834556 - L1MB8 LINE L1 -957 5189 5071 313 153 69 0 chr3 136690022 136690094 -90834484 + L1MA7 LINE L1 6210 6286 -5 2207 209 9 46 chr3 136690094 136690562 -90834016 - L1MB8 LINE L1 -1075 5071 4628 778 41 0 0 chr3 136690562 136690659 -90833919 - L1PA2 LINE L1 -5 6150 6054 7616 22 1 1 chr3 136690659 136692229 -90832349 + L1PA3 LINE L1 4473 6043 -112 883 219 86 20 chr3 136692227 136692529 -90832049 - L1MB8 LINE L1 -1509 4637 4316 * 1665 175 0 4 chr3 136692853 136693122 -90831456 - AluJb SINE Alu -44 268 1 1795 176 0 29 chr3 136693348 136693660 -90830918 - AluJo SINE Alu -9 303 1 1025 251 50 16 chr3 136693661 136693984 -90830594 - L1MB8 LINE L1 -1818 4328 3995 1811 237 56 35 chr3 136694235 136694936 -90829642 - L1ME2 LINE L1 0 6170 5406 1125 220 19 28 chr3 136695220 136695584 -90828994 - L1ME2 LINE L1 -2812 3334 2974 3271 166 35 13 chr3 136695589 136696223 -90828355 - L1MD1 LINE L1 0 6242 5595 3287 182 10 2 chr3 136696226 136696819 -90827759 - L1MB3 LINE L1 -52 6131 5534 1903 193 34 21 chr3 136696799 136697276 -90827302 - L1MB3 LINE L1 -946 5200 4718 * 2759 194 16 31 chr3 136697273 136697667 -90826911 - L1MB8 LINE L1 -2211 3935 3554 19934 43 0 4 chr3 136697667 136700942 -90823636 + L1PA5 LINE L1 2875 6151 -3 2759 194 16 31 chr3 136700942 136701232 -90823346 - L1MB8 LINE L1 -2592 3554 3261 3977 51 4 16 chr3 136701332 136702192 -90822386 - L1PA2 LINE L1 -282 5873 5028 818 289 162 39 chr3 136702225 136702896 -90821682 + L2 LINE L2 1890 2643 -671 1730 155 105 3 chr3 136702896 136703219 -90821359 + MLT2D LTR ERVL 1 356 -58 213 94 0 0 chr3 136703265 136703297 -90821281 + (CATATA)n Simple_repeat Simple_repeat 2 33 0 258 136 0 0 chr3 136703316 136703360 -90821218 + (CATATA)n Simple_repeat Simple_repeat 2 45 0 201 330 96 66 chr3 136703374 136703571 -90821007 + L2 LINE L2 2645 2847 -467 348 275 83 17 chr3 136703644 136703764 -90820814 + LTR67 LTR ERVL 372 499 -58 208 333 17 51 chr3 136703822 136703939 -90820639 + MER5A DNA MER1_type 7 119 -70 320 242 71 10 chr3 136703939 136703968 -90820610 + LTR67 LTR ERVL 451 477 -80 7063 89 4 1 chr3 136703968 136705729 -90818849 - L1PA7 LINE L1 -14 6140 4378 320 242 71 10 chr3 136705729 136705798 -90818780 + LTR67 LTR ERVL 477 555 -2 1749 197 28 79 chr3 136706789 136707246 -90817332 + MLT1D LTR MaLR 1 434 -71 297 169 0 0 chr3 136707493 136707552 -90817026 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 587 207 7 22 chr3 136707583 136707718 -90816860 + MER34 LTR ERV1 1 133 -409 480 44 29 0 chr3 136707792 136707860 -90816718 - L1PA4 LINE L1 -4 6151 6082 464 322 156 29 chr3 136708100 136708599 -90815979 - L2 LINE L2 -46 3267 2700 400 192 52 6 chr3 136708600 136708772 -90815806 + (TA)n Simple_repeat Simple_repeat 1 180 0 26 64 0 0 chr3 136708772 136708819 -90815759 + AT_rich Low_complexity Low_complexity 1 47 0 321 260 85 105 chr3 136709005 136709205 -90815373 - MER102b DNA MER1_type 0 341 146 13218 169 76 6 chr3 136710305 136710591 -90813987 - L1PBa LINE L1 -751 6111 5846 2199 75 0 11 chr3 136710591 136710870 -90813708 + AluY SINE Alu 1 276 -35 13218 169 76 6 chr3 136710870 136715714 -90808864 - L1PBa LINE L1 -1016 5846 633 1272 132 0 0 chr3 136715714 136715911 -90808667 - L1PBa LINE L1 -6664 199 3 4650 198 33 159 chr3 136715918 136716543 -90808035 - L1M4 LINE L1 -990 5156 4454 234 0 0 0 chr3 136716543 136716569 -90808009 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1426 209 0 7 chr3 136716569 136716846 -90807732 - AluJo SINE Alu -29 283 9 4650 198 33 159 chr3 136716846 136717947 -90806631 - L1M4 LINE L1 -1690 4456 3404 3169 244 55 46 chr3 136717947 136719355 -90805223 - L1MCb LINE L1 -4851 1194 3 1039 226 70 52 chr3 136719463 136719906 -90804672 - L1M4 LINE L1 -1497 4649 4199 858 234 78 26 chr3 136719905 136720328 -90804250 + L1ME2 LINE L1 5494 5998 -166 * 5186 156 40 12 chr3 136720347 136721957 -90802621 + L1PA16 LINE L1 4488 6148 -18 3886 195 20 38 chr3 136721955 136722859 -90801719 + L1MB8 LINE L1 5290 6177 -1 * 2219 182 23 25 chr3 136723668 136724102 -90800476 + Tigger2a DNA MER2_type 1 433 -1 857 309 18 4 chr3 136724206 136724481 -90800097 + HERVL LTR ERVL 1668 1945 -3051 411 304 69 69 chr3 136724506 136724766 -90799812 + HERVL LTR ERVL 2385 2644 -3120 274 343 19 0 chr3 136724733 136724841 -90799737 + HERVL LTR ERVL 3268 3377 -2387 * 1971 339 61 30 chr3 136725112 136726410 -90798168 + HERVL LTR ERVL 3407 5026 -628 392 344 21 43 chr3 136726813 136726999 -90797579 + LTR16C LTR ERVL 1 182 -309 966 269 46 19 chr3 136727080 136727511 -90797067 + L1M4 LINE L1 3464 3906 -2240 30462 41 3 0 chr3 136727525 136731994 -90792584 + L1PA4 LINE L1 1578 6056 -99 2668 179 47 21 chr3 136731994 136732760 -90791818 + L1MA9 LINE L1 5035 5826 -486 1942 161 20 25 chr3 136732777 136733169 -90791409 + L1PA16 LINE L1 5766 6155 -11 307 236 85 19 chr3 136733365 136733471 -90791107 + L1M4 LINE L1 4552 4664 -1482 19701 121 21 34 chr3 136733473 136737700 -90786878 + L1P3 LINE L1 2 4232 -2229 4894 154 39 7 chr3 136737813 136738677 -90785901 + L1P3 LINE L1 686 1577 -4884 1605 142 0 15 chr3 136738674 136738935 -90785643 + L1PA4 LINE L1 1 257 -5889 * 35205 42 4 7 chr3 136738935 136744156 -90780422 + L1PA4 LINE L1 945 6150 -5 227 282 0 0 chr3 136744187 136744258 -90780320 - L1MDa LINE L1 -3834 2706 2636 8979 169 22 15 chr3 136744342 136747225 -90777353 - L1MA4A LINE L1 0 6954 4039 3028 231 51 15 chr3 136747231 136747322 -90777256 - L1MDa LINE L1 -3966 2574 2488 1743 211 0 0 chr3 136747322 136747634 -90776944 - AluJb SINE Alu 0 312 1 3028 231 51 15 chr3 136747634 136748500 -90776078 - L1MDa LINE L1 -4052 2488 1582 2000 196 42 16 chr3 136748527 136748975 -90775603 - L1MA9 LINE L1 -30 6282 5823 5125 135 13 13 chr3 136748979 136749950 -90774628 - L1PA15 LINE L1 0 6165 5165 3802 227 5 14 chr3 136749954 136750568 -90774010 + L1PA16 LINE L1 3680 4285 -1861 2125 82 0 0 chr3 136750568 136750848 -90773730 - L1PA7 LINE L1 -1 6153 5874 3802 227 5 14 chr3 136750848 136751120 -90773458 + L1PA16 LINE L1 4285 4558 -1588 407 259 36 0 chr3 136751117 136751256 -90773322 - L1PA13 LINE L1 -3213 3584 3441 * 1803 148 0 0 chr3 136751257 136751514 -90773064 - AluSx SINE Alu -32 280 24 4470 242 27 38 chr3 136751514 136754068 -90770510 - L1PA13 LINE L1 -3753 3044 1 2676 174 48 21 chr3 136754072 136754838 -90769740 - L1MA8 LINE L1 -464 5827 5035 11083 33 5 12 chr3 136754838 136756895 -90767683 - L1PA4 LINE L1 -99 6056 4017 679 276 11 37 chr3 136756889 136757157 -90767421 + L1MC/D LINE L1 2329 2589 -3557 * 3509 213 45 13 chr3 136757150 136758059 -90766519 + L1PA16 LINE L1 5209 6153 -13 788 236 89 30 chr3 136758064 136758989 -90765589 + L1MC/D LINE L1 2585 3711 -2435 * 1327 231 53 14 chr3 136758988 136759559 -90765019 + L1MC/D LINE L1 5009 5608 -751 * 2431 176 72 4 chr3 136759556 136760073 -90764505 - L1M4c LINE L1 -4907 1477 926 * 4168 210 45 142 chr3 136760064 136762273 -90762305 + L1 LINE L1 2322 4316 -1830 616 333 59 57 chr3 136762288 136762763 -90761815 + L1M3b LINE L1 9 484 -5797 4077 228 54 139 chr3 136762784 136767028 -90757550 + L1M2 LINE L1 1 3888 -2960 43251 44 1 2 chr3 136767037 136773189 -90751389 + L1PA2 LINE L1 9 6155 0 180 0 0 0 chr3 136773197 136773217 -90751361 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 23 78 0 0 chr3 136773335 136773386 -90751192 + AT_rich Low_complexity Low_complexity 1 51 0 242 313 0 0 chr3 136773726 136773738 -90750840 - L1MA4A LINE L1 0 6303 6292 5083 178 44 31 chr3 136773738 136774126 -90750452 - L1PB4 LINE L1 0 6156 5775 470 83 14 0 chr3 136774126 136774198 -90750380 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 5083 178 44 31 chr3 136774198 136775655 -90748923 - L1PB4 LINE L1 -381 5775 4268 1986 141 3 0 chr3 136775655 136775945 -90748633 + AluSq SINE Alu 1 291 -22 5083 178 44 31 chr3 136775945 136776379 -90748199 - L1PB4 LINE L1 -1888 4268 3841 575 0 0 0 chr3 136776385 136776456 -90748122 - L1HS LINE L1 0 6155 6085 347 202 36 0 chr3 136776438 136776522 -90748056 - L1M4 LINE L1 -2284 3931 3845 * 21 0 0 0 chr3 136776522 136776543 -90748035 + AT_rich Low_complexity Low_complexity 1 21 0 1504 212 0 20 chr3 136776543 136776836 -90747742 - AluJo SINE Alu -23 289 3 1226 201 11 47 chr3 136776839 136777118 -90747460 - AluJo SINE Alu 0 312 44 3645 246 67 30 chr3 136777134 136779312 -90745266 - L1PBa LINE L1 -2367 3848 1624 434 270 34 11 chr3 136779333 136779511 -90745067 - L1MEc LINE L1 -5105 1291 1110 2538 268 62 37 chr3 136779531 136779551 -90745027 - L1MEc LINE L1 -5357 1039 1021 261 83 0 0 chr3 136779551 136779587 -90744991 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 2538 268 62 37 chr3 136779587 136780542 -90744036 - L1MEc LINE L1 -5375 1021 40 241 308 0 0 chr3 136780651 136780716 -90743862 + CT-rich Low_complexity Low_complexity 3 67 0 21 57 0 0 chr3 136781611 136781646 -90742932 + AT_rich Low_complexity Low_complexity 1 35 0 2362 104 0 0 chr3 136783030 136783337 -90741241 + AluSc SINE Alu 1 307 -2 12275 223 11 4 chr3 136785328 136788281 -90736297 - L1P3 LINE L1 -1867 5717 2736 1111 104 0 0 chr3 136788286 136788430 -90736148 - AluSg/x SINE Alu -15 297 154 2782 312 42 60 chr3 136788430 136789822 -90734756 - L1P3 LINE L1 -6204 1377 12 16473 38 1 0 chr3 136790005 136792060 -90732518 + L1P LINE L1 1809 3865 -2281 4233 146 51 10 chr3 136792180 136792900 -90731678 - L1P3 LINE L1 -5711 750 1 423 312 39 52 chr3 136792997 136793228 -90731350 - L3 LINE CR1 -589 988 761 1196 235 39 4 chr3 136793343 136793598 -90730980 - MSTB LTR MaLR -73 353 90 292 106 0 43 chr3 136793565 136793612 -90730966 + MSTA LTR MaLR 122 166 -262 * 524 180 178 38 chr3 136793610 136793740 -90730838 - MSTB LTR MaLR -298 159 1 303 130 0 0 chr3 136794623 136794677 -90729901 + L1 LINE L1 3424 3477 -2669 11706 214 29 6 chr3 136794902 136798774 -90725804 + L1PA16 LINE L1 2163 6157 -9 3751 166 19 33 chr3 136799360 136800241 -90724337 + L1P5 LINE L1 4478 5358 -793 2215 97 0 0 chr3 136800241 136800546 -90724032 + AluSc SINE Alu 3 307 0 3751 166 19 33 chr3 136800546 136800786 -90723792 + L1P5 LINE L1 5358 5600 -551 22 35 0 0 chr3 136801026 136801055 -90723523 + AT_rich Low_complexity Low_complexity 1 29 0 23772 165 36 27 chr3 136801366 136805474 -90719104 - L1PA10 LINE L1 -1 6482 2222 222 37 0 0 chr3 136805474 136805501 -90719077 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 23772 165 36 27 chr3 136805501 136807735 -90716843 - L1PA10 LINE L1 -4261 2222 10 289 365 56 6 chr3 136808004 136808182 -90716396 - MER117 DNA MER1_type -1 196 10 2209 106 3 10 chr3 136808784 136809095 -90715483 - AluSc SINE Alu 0 309 1 332 311 94 47 chr3 136809645 136809857 -90714721 + MIR SINE MIR 3 224 -38 22 35 0 0 chr3 136810008 136810037 -90714541 + AT_rich Low_complexity Low_complexity 1 29 0 2417 119 17 89 chr3 136810749 136811210 -90713368 - MSTA LTR MaLR 0 428 1 187 316 35 0 chr3 136811565 136811622 -90712956 + L2 LINE L2 3137 3195 -77 557 381 57 29 chr3 136813205 136813806 -90710772 - L2 LINE L2 -6 3266 2651 749 311 76 19 chr3 136814314 136814629 -90709949 + MER102b DNA MER1_type 2 334 -7 246 306 28 19 chr3 136814972 136815080 -90709498 + L1ME4a LINE L1 5963 6071 -50 344 243 65 9 chr3 136815306 136815413 -90709165 - MER103 DNA DNA -52 114 2 244 326 91 0 chr3 136815718 136815850 -90708728 - MIR SINE MIR -1 261 118 237 108 0 0 chr3 136817094 136817131 -90707447 + (TGAA)n Simple_repeat Simple_repeat 1 37 0 42 20 0 0 chr3 136817459 136817508 -90707070 + AT_rich Low_complexity Low_complexity 1 49 0 373 265 13 20 chr3 136817612 136817763 -90706815 + L1ME LINE L1 4561 4710 -1436 485 194 65 22 chr3 136818190 136818329 -90706249 + HAL1 LINE L1 2248 2392 -115 23 0 0 0 chr3 136818436 136818459 -90706119 + AT_rich Low_complexity Low_complexity 1 23 0 236 300 0 0 chr3 136818635 136818705 -90705873 + L1ME LINE L1 5734 5803 -359 310 365 19 9 chr3 136818990 136819097 -90705481 + MIR SINE MIR 26 133 -129 364 280 113 21 chr3 136819101 136819340 -90705238 - L1M4 LINE L1 -965 5181 4921 943 300 107 15 chr3 136819431 136820353 -90704225 - L1M4 LINE L1 -1344 4802 3796 2124 119 3 10 chr3 136820444 136820738 -90703840 + AluSx SINE Alu 1 292 -20 873 204 109 0 chr3 136821442 136821643 -90702935 + MER58A DNA MER1_type 2 224 0 1217 235 45 10 chr3 136821921 136822210 -90702368 - MLT1D LTR MaLR 0 505 207 367 247 13 0 chr3 136822263 136822340 -90702238 - MLT1D LTR MaLR -423 82 5 751 329 95 67 chr3 136822377 136822546 -90702032 + HERV16 LTR ERVL 368 531 -4465 1005 249 82 72 chr3 136822546 136823007 -90701571 - MLT1C LTR MaLR 0 467 2 751 329 95 67 chr3 136823007 136823934 -90700644 + HERV16 LTR ERVL 531 1495 -3501 277 338 0 0 chr3 136824093 136824173 -90700405 + HERV16 LTR ERVL 1746 1825 -3660 1760 324 68 45 chr3 136824241 136825462 -90699116 + HERV16 LTR ERVL 1974 3222 -2542 540 241 80 7 chr3 136825503 136825640 -90698938 + HERV16 LTR ERVL 3321 3467 -2297 352 375 26 34 chr3 136825712 136825979 -90698599 + HERV16 LTR ERVL 3572 3836 -1928 525 332 87 39 chr3 136826007 136826736 -90697842 + L1 LINE L1 2835 3604 -2542 436 218 0 6 chr3 136826738 136826878 -90697700 + MER58A DNA MER1_type 5 224 0 3696 248 59 65 chr3 136827014 136828346 -90696232 + L1M3d LINE L1 1 937 -4954 708 229 0 0 chr3 136828346 136828477 -90696101 + FLAM_C SINE Alu 2 132 -1 3696 248 59 65 chr3 136828477 136828914 -90695664 + L1M3d LINE L1 937 1375 -4516 1744 145 78 31 chr3 136828930 136829288 -90695290 - THE1C LTR MaLR 0 375 1 1957 177 57 28 chr3 136829292 136829663 -90694915 - MSTC LTR MaLR -2 426 42 2175 136 0 25 chr3 136829663 136830097 -90694481 - L1PA5 LINE L1 0 6154 5732 1957 177 57 28 chr3 136830097 136830114 -90694464 - MSTC LTR MaLR -386 42 27 1021 264 133 20 chr3 136830356 136830987 -90693591 - L1MEc LINE L1 -3248 3292 2571 2062 122 7 0 chr3 136830987 136831274 -90693304 - AluSc SINE Alu -18 291 3 1021 264 133 20 chr3 136831274 136831351 -90693227 - L1MEc LINE L1 -3969 2571 2504 415 275 78 78 chr3 136831364 136831673 -90692905 - L1MEc LINE L1 -4210 2511 2203 313 342 13 25 chr3 136831694 136831852 -90692726 - L1MEc LINE L1 -4440 2100 1945 257 215 122 19 chr3 136831859 136831966 -90692612 - L1MD3 LINE L1 0 7995 7878 * 2791 214 38 23 chr3 136831961 136832625 -90691953 - L1MD2 LINE L1 -196 6557 5884 676 220 47 19 chr3 136832647 136832861 -90691717 - L1MD2 LINE L1 -1070 5470 5251 631 225 0 0 chr3 136832883 136833025 -90691553 - L1 LINE L1 -3113 3090 2949 816 225 103 40 chr3 136833025 136833420 -90691158 - LTR30 LTR ERV1 0 595 112 15003 276 28 33 chr3 136833662 136840086 -90684492 - HERV3 LTR ERV1 -1700 7035 386 6901 102 106 89 chr3 136840253 136842084 -90682494 - pTR5 LTR ERV1 0 2438 748 731 223 107 43 chr3 136842086 136842463 -90682115 - LTR30 LTR ERV1 -21 529 108 5673 150 48 21 chr3 136842536 136844903 -90679675 - L1PBa LINE L1 -3237 2966 373 1873 230 60 7 chr3 136844903 136845451 -90679127 - L1MD2 LINE L1 -1306 5234 4658 705 315 10 0 chr3 136845452 136845652 -90678926 + MER45B DNA AcHobo 1 202 -838 574 237 144 0 chr3 136845661 136845876 -90678702 - L1MD2 LINE L1 -2167 4373 4128 1313 83 11 22 chr3 136845888 136846068 -90678510 + AluSc SINE Alu 1 178 -131 760 254 89 30 chr3 136846228 136846700 -90677878 - L1MD2 LINE L1 -2615 3925 3426 6247 99 3 0 chr3 136846710 136847860 -90676718 - L1PA10 LINE L1 -4 6164 5014 5035 127 19 7 chr3 136847863 136848685 -90675893 + L1PA10 LINE L1 4178 5009 -1137 226 279 97 7 chr3 136848674 136848828 -90675750 - L1MD2 LINE L1 -3096 3444 3277 * 504 200 136 9 chr3 136848848 136848958 -90675620 + Tigger3(Golem) DNA MER2_type 21 144 -2885 * 1493 134 7 56 chr3 136848956 136849074 -90675504 + Tigger3(Golem) DNA MER2_type 2783 2905 -133 1264 192 31 0 chr3 136849074 136849303 -90675275 - MER46A DNA MER2_type 0 236 1 1493 134 7 56 chr3 136849303 136849453 -90675125 + Tigger3(Golem) DNA MER2_type 2905 3038 0 2247 222 51 6 chr3 136849453 136850564 -90674014 - L1MD2 LINE L1 -3262 3278 2126 7939 12 0 0 chr3 136850570 136851611 -90672967 + L1HS LINE L1 5115 6155 0 3078 251 84 23 chr3 136851691 136852941 -90671637 - L1MD2 LINE L1 -4462 2078 753 17519 40 4 0 chr3 136853287 136856206 -90668372 - L1PA3 LINE L1 -3 6152 3225 513 251 55 18 chr3 136856358 136856577 -90668001 - L1M4c LINE L1 -2202 4180 3954 3101 165 49 90 chr3 136856580 136857423 -90667155 - L1MB1 LINE L1 -1 6403 5596 252 252 149 0 chr3 136857422 136857529 -90667049 - L1M4c LINE L1 -4189 2195 2073 * 2384 212 4 66 chr3 136857553 136858233 -90666345 - L1MB1 LINE L1 -792 5590 4953 5231 232 71 25 chr3 136858236 136860187 -90664391 - L1MB1 LINE L1 -2307 4075 2016 2091 127 7 0 chr3 136860349 136860641 -90663937 - AluSp SINE Alu -19 294 1 4341 174 42 19 chr3 136860729 136861661 -90662917 - L1MA8 LINE L1 -1 6290 5338 293 255 49 0 chr3 136861665 136861767 -90662811 - L1MA8 LINE L1 -1113 5033 4927 * 426 169 227 0 chr3 136861766 136861903 -90662675 - L1 LINE L1 -800 5346 5175 521 292 117 0 chr3 136862202 136862356 -90662222 + MIR SINE MIR 5 176 -86 1690 195 39 12 chr3 136862379 136862795 -90661783 - L1MA5 LINE L1 0 6300 5874 7525 187 29 5 chr3 136862795 136864317 -90660261 - L1 LINE L1 -934 5212 3652 924 166 57 0 chr3 136864307 136864518 -90660060 - L1 LINE L1 -2733 3413 3191 * 4589 158 3 5 chr3 136864514 136865290 -90659288 - L1PA15 LINE L1 0 6165 5392 593 304 63 51 chr3 136865381 136865849 -90658729 - L1M1 LINE L1 -5769 1796 407 1670 175 33 36 chr3 136865969 136866329 -90658249 + MER1A DNA MER1_type 1 359 -170 11189 100 1 0 chr3 136866523 136869000 -90655578 + L1PA2 LINE L1 3690 6155 0 180 0 0 0 chr3 136869009 136869029 -90655549 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 23 78 0 0 chr3 136869147 136869198 -90655380 + AT_rich Low_complexity Low_complexity 1 51 0 242 313 0 0 chr3 136869538 136869550 -90655028 - L1MA4A LINE L1 0 6303 6292 5083 178 44 31 chr3 136869550 136869938 -90654640 - L1PB4 LINE L1 0 6156 5775 470 83 14 0 chr3 136869938 136870010 -90654568 + (TCTA)n Simple_repeat Simple_repeat 1 73 0 5083 178 44 31 chr3 136870010 136871467 -90653111 - L1PB4 LINE L1 -381 5775 4268 2040 134 3 0 chr3 136871467 136871757 -90652821 + AluSq SINE Alu 1 291 -22 5083 178 44 31 chr3 136871757 136872191 -90652387 - L1PB4 LINE L1 -1888 4268 3841 575 0 0 0 chr3 136872195 136872266 -90652312 - L1HS LINE L1 0 6155 6085 363 202 36 0 chr3 136872248 136872332 -90652246 - L1M4 LINE L1 -2284 5281 5195 * 21 0 0 0 chr3 136872332 136872353 -90652225 + AT_rich Low_complexity Low_complexity 1 21 0 1519 208 0 20 chr3 136872353 136872646 -90651932 - AluJo SINE Alu -23 289 3 1226 201 11 47 chr3 136872649 136872928 -90651650 - AluJo SINE Alu 0 312 44 605 278 8 48 chr3 136872944 136873297 -90651281 - L1M4 LINE L1 -2367 5198 4860 318 243 108 0 chr3 136873409 136873557 -90651021 + L1M4 LINE L1 3023 3186 -2960 39711 52 4 5 chr3 136873566 136878603 -90645975 + L1P LINE L1 9 5039 -1107 232 227 45 15 chr3 136878703 136878769 -90645809 - L1ME LINE L1 -304 5866 5799 27 29 0 0 chr3 136878854 136878888 -90645690 + AT_rich Low_complexity Low_complexity 1 34 0 1524 163 20 68 chr3 136879759 136879869 -90644709 + AluJo SINE Alu 3 117 -201 1413 196 57 29 chr3 136879869 136880150 -90644428 + AluJo SINE Alu 1 289 -23 1524 163 20 68 chr3 136880150 136880369 -90644209 + AluJo SINE Alu 117 318 0 7468 29 3 5 chr3 136881112 136882247 -90642331 - L1PA4 LINE L1 -3 6152 5017 1758 242 69 75 chr3 136882422 136883351 -90641227 + L1M4 LINE L1 3207 4129 -2017 1628 255 116 9 chr3 136883360 136883792 -90640786 + MLT1E LTR MaLR 8 485 -108 626 204 0 68 chr3 136883820 136883952 -90640626 + FLAM_A SINE Alu 1 123 -10 7600 109 29 5 chr3 136884122 136885214 -90639364 + L1PBa LINE L1 1285 2409 -4454 1860 196 20 43 chr3 136885214 136885674 -90638904 - LTR2 LTR ERV1 0 449 1 7600 109 29 5 chr3 136885674 136885765 -90638813 + L1PBa LINE L1 2409 2496 -4367 903 228 58 17 chr3 136885938 136886440 -90638138 - L1M4 LINE L1 -3692 3873 3346 1385 224 38 18 chr3 136886456 136886899 -90637679 - L1M4 LINE L1 -4521 2975 2524 251 174 14 29 chr3 136887145 136887214 -90637364 + (CAATT)n Simple_repeat Simple_repeat 3 70 0 2121 124 0 0 chr3 136891692 136891991 -90632587 - AluSx SINE Alu -1 311 13 283 278 134 0 chr3 136893742 136893839 -90630739 - L2 LINE L2 -194 3078 2969 28 0 0 0 chr3 136894341 136894369 -90630209 + AT_rich Low_complexity Low_complexity 1 28 0 794 173 0 0 chr3 136895307 136895440 -90629138 + FLAM_C SINE Alu 1 133 0 201 74 0 0 chr3 136895444 136895471 -90629107 + (GGAAA)n Simple_repeat Simple_repeat 4 30 0 206 296 59 55 chr3 136895471 136895650 -90628928 + MIR SINE MIR 16 192 -58 712 250 16 31 chr3 136895825 136896017 -90628561 - MLT1K LTR MaLR 0 588 400 235 288 82 0 chr3 136896095 136896168 -90628410 - MLT1K LTR MaLR -425 163 85 2968 172 31 0 chr3 136897585 136898132 -90626446 + L1MB5 LINE L1 5601 6164 -10 553 239 84 19 chr3 136898690 136898845 -90625733 - L2 LINE L2 -1 3312 3148 401 189 8 68 chr3 136899356 136899488 -90625090 - Charlie5 DNA MER1_type -27 2585 2462 1910 219 90 17 chr3 136899749 136900283 -90624295 - MER90 LTR ERV1 0 575 3 233 268 0 24 chr3 136901029 136901111 -90623467 + L1MC5 LINE L1 7833 7912 -49 1369 266 63 75 chr3 136902296 136902913 -90621665 - MLT1L LTR MaLR 0 615 6 25 0 0 0 chr3 136904192 136904217 -90620361 + AT_rich Low_complexity Low_complexity 1 25 0 1166 234 64 13 chr3 136906600 136906976 -90617602 + L1M4 LINE L1 3768 4162 -1984 274 298 0 61 chr3 136907117 136907248 -90617330 - MIR SINE MIR -55 207 85 1137 50 0 0 chr3 136907447 136907588 -90616990 + L1PA3 LINE L1 6015 6155 0 629 301 79 78 chr3 136907721 136908708 -90615870 + L1MEd LINE L1 376 1363 -5009 519 297 102 50 chr3 136908716 136908999 -90615579 + L1MEd LINE L1 1317 1724 -4658 260 329 42 4 chr3 136909292 136909473 -90615105 + MIR SINE MIR 5 262 0 948 166 80 0 chr3 136909825 136910000 -90614578 - MER5A DNA MER1_type 0 189 1 477 296 202 11 chr3 136910066 136910333 -90614245 - L3 LINE CR1 -2 1575 1258 23 33 0 0 chr3 136910586 136910616 -90613962 + AT_rich Low_complexity Low_complexity 1 30 0 1993 124 0 27 chr3 136910642 136910941 -90613637 + AluJo SINE Alu 1 291 -21 186 43 0 0 chr3 136911422 136911445 -90613133 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7119 51 20 0 chr3 136911445 136913065 -90611513 - L1PA5 LINE L1 -9 6145 4507 3843 268 219 25 chr3 136914748 136916367 -90608211 + L2 LINE L2 849 2781 -533 286 308 37 37 chr3 136916525 136916632 -90607946 + MER5A DNA MER1_type 83 189 0 407 287 171 0 chr3 136916659 136916788 -90607790 + MIR3 SINE MIR 40 190 -18 405 326 55 69 chr3 136917326 136917544 -90607034 + L2 LINE L2 3058 3272 0 363 272 106 56 chr3 136917605 136917785 -90606793 + MER5A DNA MER1_type 1 189 0 2377 80 3 7 chr3 136918571 136918872 -90605706 - AluSg SINE Alu -10 300 1 336 342 61 0 chr3 136919075 136919189 -90605389 + L2 LINE L2 3193 3313 0 205 351 222 17 chr3 136919262 136919897 -90604681 + L2 LINE L2 1681 2445 -869 959 214 20 5 chr3 136919971 136920019 -90604559 + MER3 DNA MER1_type 1 47 -162 1991 144 7 0 chr3 136920019 136920337 -90604241 + AluSx SINE Alu 1 312 0 959 214 20 5 chr3 136920337 136920489 -90604089 + MER3 DNA MER1_type 47 204 -5 979 242 54 12 chr3 136920532 136920772 -90603806 + MIR SINE MIR 2 251 -11 806 21 0 0 chr3 136921293 136921389 -90603189 + L1PA4 LINE L1 6057 6152 -3 1212 91 0 18 chr3 136921734 136921899 -90602679 + AluSq SINE Alu 1 162 -151 1955 268 122 9 chr3 136921999 136922962 -90601616 - L1M4 LINE L1 -2342 3804 2734 1703 124 75 11 chr3 136922965 136923278 -90601300 - AluSx SINE Alu 0 330 1 712 161 31 8 chr3 136923284 136923414 -90601164 - AluJb SINE Alu -179 133 1 703 146 24 8 chr3 136923641 136923764 -90600814 + AluJb SINE Alu 1 125 -187 22 35 0 0 chr3 136923767 136923796 -90600782 + AT_rich Low_complexity Low_complexity 1 29 0 20808 34 2 1 chr3 136923802 136927113 -90597465 - L1PA4 LINE L1 -6 6149 2836 21978 66 8 0 chr3 136927727 136930543 -90594035 - L1PA4 LINE L1 -3307 2839 1 1335 286 35 16 chr3 136930557 136931107 -90593471 - L1M4 LINE L1 -3418 2728 2169 307 308 103 0 chr3 136931107 136931224 -90593354 - MER5A DNA MER1_type -60 129 1 270 323 123 49 chr3 136931346 136931671 -90592907 - L2 LINE L2 -2737 577 229 2230 117 0 0 chr3 136931990 136932297 -90592281 + AluSx SINE Alu 3 309 -3 2096 112 14 0 chr3 136934136 136934421 -90590157 - AluSx SINE Alu -23 289 1 22 0 0 0 chr3 136934563 136934585 -90589993 + AT_rich Low_complexity Low_complexity 1 22 0 674 285 90 0 chr3 136936097 136936297 -90588281 - MIR SINE MIR -29 233 16 1098 269 99 10 chr3 136936518 136937036 -90587542 - L2 LINE L2 0 3313 2734 569 319 56 19 chr3 136937044 136937260 -90587318 - MIR SINE MIR -32 230 7 1433 188 11 4 chr3 136938103 136938380 -90586198 - AluSq SINE Alu -3 310 32 256 86 0 0 chr3 136939651 136939686 -90584892 - U2 snRNA snRNA -153 35 1 503 211 10 39 chr3 136939941 136940045 -90584533 + FLAM_A SINE Alu 25 125 -17 427 200 105 11 chr3 136940125 136940220 -90584358 - MIR SINE MIR -3 259 156 288 98 39 0 chr3 136941160 136941211 -90583367 - L1MA5 LINE L1 -2 6298 6246 4406 127 64 58 chr3 136941228 136941709 -90582869 - L1PA15 LINE L1 -21 6144 5668 1895 101 63 17 chr3 136941709 136941865 -90582713 - AluSx SINE Alu -12 300 153 2424 103 0 0 chr3 136941865 136942175 -90582403 - AluSq SINE Alu -3 310 1 1895 101 63 17 chr3 136942175 136942305 -90582273 - AluSx SINE Alu -159 153 1 4406 127 64 58 chr3 136942305 136943310 -90581268 - L1PA15 LINE L1 -497 5668 4650 294 291 155 0 chr3 136944496 136944702 -90579876 - L1MC4a LINE L1 -1879 5929 5692 242 214 274 34 chr3 136945128 136945245 -90579333 + L2 LINE L2 2405 2549 -765 210 244 0 0 chr3 136945238 136945279 -90579299 - L2 LINE L2 -780 2534 2494 * 805 273 173 29 chr3 136945274 136945928 -90578650 + L2 LINE L2 2527 3313 0 591 315 61 11 chr3 136946887 136947166 -90577412 + L2 LINE L2 2879 3171 -142 2263 152 23 102 chr3 136947558 136948117 -90576461 - LTR40a LTR ERVL -4 515 1 308 323 112 25 chr3 136949001 136949162 -90575416 - MER5B DNA MER1_type -2 176 2 180 306 111 50 chr3 136949523 136949722 -90574856 - MIR SINE MIR -50 212 2 813 301 117 22 chr3 136950999 136951564 -90573014 - L2 LINE L2 -97 3216 2593 366 257 64 64 chr3 136952480 136952620 -90571958 - MIR3 SINE MIR -64 144 5 21819 70 6 24 chr3 136952791 136953193 -90571385 + L1PA6 LINE L1 2374 2782 -3372 2532 69 0 0 chr3 136953193 136953496 -90571082 + AluY SINE Alu 1 303 -8 21819 70 6 24 chr3 136953496 136956861 -90567717 + L1PA6 LINE L1 2782 6153 -1 2001 118 24 3 chr3 136957115 136957403 -90567175 - AluSx SINE Alu -18 294 1 2290 123 0 0 chr3 136958329 136958639 -90565939 - AluSx SINE Alu -2 310 1 5460 87 37 0 chr3 136959005 136959790 -90564788 + L1MA2 LINE L1 5485 6298 -6 23 0 0 0 chr3 136959795 136959818 -90564760 + AT_rich Low_complexity Low_complexity 1 23 0 199 222 89 0 chr3 136960415 136960460 -90564118 + L3b LINE CR1 1526 1574 -9 25 65 0 0 chr3 136960460 136960506 -90564072 + AT_rich Low_complexity Low_complexity 1 46 0 242 262 104 49 chr3 136960650 136960814 -90563764 + L1ME LINE L1 5594 5766 -355 13503 25 1 3 chr3 136963248 136965653 -90558925 + L1PA3 LINE L1 3794 6194 0 587 92 0 0 chr3 136965663 136965778 -90558800 + AluSp/q SINE Alu 207 321 0 325 267 84 23 chr3 136965816 136965947 -90558631 + MIR SINE MIR 78 216 -46 1736 185 3 10 chr3 136966045 136966347 -90558231 - AluJb SINE Alu -12 300 1 1518 128 0 0 chr3 136966357 136966568 -90558010 - AluSg/x SINE Alu -15 295 85 495 248 66 25 chr3 136966669 136966911 -90557667 - MER20B DNA MER1_type 0 783 532 661 266 12 35 chr3 136967241 136967410 -90557168 - MER5B DNA MER1_type -1 177 13 194 336 115 29 chr3 136967538 136967642 -90556936 + MIR SINE MIR 28 140 -122 1287 200 79 0 chr3 136967668 136967933 -90556645 + AluJo SINE Alu 10 295 -17 181 314 59 29 chr3 136967938 136968040 -90556538 + MIR SINE MIR 150 254 -8 357 335 121 16 chr3 136968223 136968471 -90556107 - L2 LINE L2 -792 2522 2249 759 227 58 14 chr3 136968590 136968797 -90555781 + Charlie8 DNA MER1_type 2 217 -2200 290 281 195 33 chr3 136969051 136969353 -90555225 + L2 LINE L2 2873 3223 -49 212 314 102 8 chr3 136969513 136969631 -90554947 - L2 LINE L2 -574 2740 2612 26 0 0 0 chr3 136970679 136970705 -90553873 + AT_rich Low_complexity Low_complexity 1 26 0 394 167 216 0 chr3 136970830 136970932 -90553646 - MIR SINE MIR -40 222 99 25 0 0 0 chr3 136971161 136971186 -90553392 + AT_rich Low_complexity Low_complexity 1 25 0 187 366 0 24 chr3 136971614 136971696 -90552882 - MIR3 SINE MIR -19 189 110 1975 135 13 13 chr3 136972299 136972603 -90551975 + AluJo SINE Alu 1 304 -8 320 274 57 57 chr3 136973277 136973452 -90551126 + L1ME LINE L1 5255 5429 -2379 2257 86 0 0 chr3 136973484 136973764 -90550814 - AluSg SINE Alu -30 280 1 292 287 101 34 chr3 136973884 136974152 -90550426 + L1ME LINE L1 5568 5853 -268 31808 66 18 1 chr3 136974237 136978630 -90545948 + L1P LINE L1 1 4468 -1678 1575 115 0 52 chr3 137028630 137028882 -90495696 + MER1A DNA MER1_type 129 367 -162 7265 39 0 4 chr3 137028939 137029869 -90494709 + L1PA5 LINE L1 5198 6124 -30 1780 127 8 0 chr3 137029969 137030221 -90494357 - AluSc SINE Alu -53 256 3 231 210 99 12 chr3 137030221 137030302 -90494276 - L1MCa LINE L1 -3953 2587 2500 415 275 78 78 chr3 137030311 137030620 -90493958 - L1MCa LINE L1 -4210 2511 2203 313 342 13 25 chr3 137030641 137030799 -90493779 - L1MCa LINE L1 -4440 2100 1945 257 215 122 19 chr3 137030806 137030913 -90493665 - L1MD3 LINE L1 0 7995 7878 * 2791 214 38 23 chr3 137030908 137031572 -90493006 - L1MD2 LINE L1 -196 6163 5490 3106 251 24 15 chr3 137031698 137032697 -90491881 - L1P LINE L1 -2976 3170 2163 303 130 0 0 chr3 137032922 137032976 -90491602 - L1MDa LINE L1 -2669 3871 3818 1157 195 4 4 chr3 137033272 137033518 -90491060 - L1P LINE L1 -887 5259 5014 * 5036 127 19 7 chr3 137033517 137034343 -90490235 + L1P LINE L1 4174 5009 -1137 246 273 97 7 chr3 137034332 137034486 -90490092 - L1MDa LINE L1 -3096 3444 3277 * 504 200 136 9 chr3 137034506 137034616 -90489962 + Tigger3(Golem) DNA MER2_type 21 144 -2885 * 1493 134 7 56 chr3 137034614 137034732 -90489846 + Tigger3(Golem) DNA MER2_type 2773 2895 -133 1264 192 31 0 chr3 137034732 137034961 -90489617 - MER46A DNA MER2_type 0 236 1 1493 134 7 56 chr3 137034961 137035111 -90489467 + Tigger3(Golem) DNA MER2_type 2895 3028 0 2247 222 51 6 chr3 137035111 137036222 -90488356 - L1MDa LINE L1 -3262 3278 2126 4299 12 0 0 chr3 137036227 137036855 -90487723 + L1P1 LINE L1 5115 5742 -413 6300 99 4 19 chr3 137036955 137037988 -90486590 + L1P3 LINE L1 4462 5478 -676 2259 98 0 10 chr3 137037988 137038294 -90486284 + AluSc SINE Alu 7 309 0 6300 99 4 19 chr3 137038294 137038348 -90486230 + L1P3 LINE L1 5478 5531 -623 * 10503 46 7 1 chr3 137038330 137040431 -90484147 + L1HS LINE L1 4046 6155 0 2796 251 86 23 chr3 137040512 137041760 -90482818 - L1MDa LINE L1 -4462 2078 753 6826 29 0 0 chr3 137042106 137042941 -90481637 - L1PA3 LINE L1 -3 6152 5318 1626 171 66 27 chr3 137043045 137043379 -90481199 + MSTC LTR MaLR 80 426 -2 1784 140 78 31 chr3 137043383 137043741 -90480837 + THE1C LTR MaLR 1 375 0 3330 250 59 65 chr3 137043757 137044194 -90480384 - L1M4c LINE L1 -4516 1375 937 709 229 0 0 chr3 137044194 137044325 -90480253 - FLAM_C SINE Alu -1 132 2 3330 250 59 65 chr3 137044325 137045658 -90478920 - L1M4c LINE L1 -4954 937 1 413 194 0 0 chr3 137045794 137045866 -90478712 - MER58A DNA MER1_type 0 224 153 308 243 0 0 chr3 137045864 137045934 -90478644 - MER58A DNA MER1_type -33 74 5 * 524 329 100 44 chr3 137045936 137046665 -90477913 - L1M4 LINE L1 -2542 3604 2835 280 370 17 38 chr3 137046693 137046931 -90477647 - ERVL LTR ERVL -1928 3836 3604 494 241 80 7 chr3 137047032 137047169 -90477409 - ERVL LTR ERVL -2297 3467 3321 1407 327 65 43 chr3 137047210 137048431 -90476147 - ERVL LTR ERVL -2542 3222 1974 252 338 0 0 chr3 137048499 137048579 -90475999 - ERVL LTR ERVL -3660 1825 1746 512 357 71 24 chr3 137048738 137049248 -90475330 - ERVL LTR ERVL -3501 1495 962 250 317 94 57 chr3 137049570 137049665 -90474913 - ERVL LTR ERVL -4354 642 552 1135 400 71 7 chr3 137049665 137050103 -90474475 + MLT1C LTR MaLR 2 467 0 250 317 94 57 chr3 137050103 137050272 -90474306 - ERVL LTR ERVL -4444 552 368 339 247 13 0 chr3 137050309 137050386 -90474192 + MLT1D LTR MaLR 5 82 -423 1121 235 45 10 chr3 137050439 137050728 -90473850 + MLT1D LTR MaLR 207 505 0 866 204 109 0 chr3 137051006 137051207 -90473371 - MER58A DNA MER1_type 0 224 2 2145 119 3 10 chr3 137051911 137052205 -90472373 - AluSx SINE Alu -20 292 1 724 300 107 15 chr3 137052296 137053218 -90471360 + L1M4 LINE L1 3796 4802 -1344 366 284 113 21 chr3 137053309 137053548 -90471030 + L1M4 LINE L1 4921 5181 -965 305 365 19 9 chr3 137053552 137053659 -90470919 - MIR SINE MIR -129 133 26 23 0 0 0 chr3 137054190 137054213 -90470365 + AT_rich Low_complexity Low_complexity 1 23 0 449 194 65 22 chr3 137054320 137054459 -90470119 - HAL1 LINE L1 -115 2392 2248 381 275 67 24 chr3 137054687 137054985 -90469593 - L1M4 LINE L1 -1162 4984 4612 31658 49 2 3 chr3 137055102 137059310 -90465268 - L1P LINE L1 -1001 5145 945 1514 151 0 4 chr3 137059310 137059568 -90465010 - L1P LINE L1 -5889 257 1 8911 137 40 8 chr3 137059568 137061096 -90463482 - L1P3 LINE L1 -4884 1577 1 409 312 39 52 chr3 137061193 137061424 -90463154 - L3 LINE CR1 -589 988 761 1102 235 39 4 chr3 137061539 137061794 -90462784 - MSTB LTR MaLR -73 353 90 276 106 0 43 chr3 137061761 137061808 -90462770 + MSTA LTR MaLR 122 166 -262 * 491 181 179 40 chr3 137061812 137061936 -90462642 - MSTB LTR MaLR -305 152 1 495 241 12 18 chr3 137062506 137062672 -90461906 - L1M4 LINE L1 -1125 5078 4914 599 231 0 0 chr3 137062694 137062841 -90461737 - L1M4 LINE L1 -3113 3090 2944 737 224 103 40 chr3 137062855 137063231 -90461347 - LTR30 LTR ERV1 -20 529 112 16594 283 35 36 chr3 137063682 137069897 -90454681 - HERV3 LTR ERV1 -1833 6593 386 6483 102 106 89 chr3 137070064 137071895 -90452683 - pTR5 LTR ERV1 0 2438 748 642 219 108 44 chr3 137071897 137072274 -90452304 - LTR30 LTR ERV1 -21 529 108 5337 150 48 20 chr3 137072347 137074713 -90449865 - L1PBa LINE L1 -3237 2966 373 1726 230 60 7 chr3 137074713 137075261 -90449317 - L1M4 LINE L1 -1306 4840 4264 608 311 6 0 chr3 137075262 137075445 -90449133 + MER45 DNA AcHobo 1 184 -1397 42 20 0 0 chr3 137075685 137075734 -90448844 + AT_rich Low_complexity Low_complexity 1 49 0 237 108 0 0 chr3 137076062 137076099 -90448479 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 234 326 91 0 chr3 137077342 137077474 -90447104 + MIR SINE MIR 118 261 -1 308 224 75 19 chr3 137077779 137077886 -90446692 + MER103 DNA DNA 2 114 -52 319 315 67 20 chr3 137078071 137078220 -90446358 - L1ME4a LINE L1 -3 6118 5963 652 311 76 19 chr3 137078563 137078878 -90445700 - MER102b DNA MER1_type -7 334 2 555 354 141 33 chr3 137078942 137079854 -90444724 + L2 LINE L2 2256 3266 -6 187 316 35 0 chr3 137081437 137081494 -90443084 - L2 LINE L2 -77 3195 3137 2425 119 17 89 chr3 137081849 137082310 -90442268 + MSTA LTR MaLR 1 428 0 22 35 0 0 chr3 137083022 137083051 -90441527 + AT_rich Low_complexity Low_complexity 1 29 0 324 311 94 47 chr3 137083202 137083414 -90441164 - MIR SINE MIR -38 224 3 2236 106 3 10 chr3 137083964 137084275 -90440303 + AluSc SINE Alu 1 309 0 238 365 56 6 chr3 137084877 137085055 -90439523 + MER117 DNA MER1_type 10 196 -1 22206 157 36 22 chr3 137085324 137087558 -90437020 + L1PA10 LINE L1 10 2212 -4271 222 37 0 0 chr3 137087558 137087585 -90436993 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 22206 157 36 22 chr3 137087585 137091693 -90432885 + L1PA10 LINE L1 2212 6482 -1 22 35 0 0 chr3 137092004 137092033 -90432545 + AT_rich Low_complexity Low_complexity 1 29 0 3793 158 18 36 chr3 137092273 137092513 -90432065 - L1P5 LINE L1 -551 5915 5672 2180 97 0 0 chr3 137092513 137092818 -90431760 - AluSc SINE Alu 0 307 3 3793 158 18 36 chr3 137092818 137093699 -90430879 - L1P5 LINE L1 -794 5672 4793 485 108 0 0 chr3 137094285 137094359 -90430219 - L1PA16 LINE L1 -9 6157 6084 8143 191 35 6 chr3 137094360 137096941 -90427637 - L1PA16 LINE L1 -117 6049 3393 30 59 0 0 chr3 137097673 137097724 -90426854 + AT_rich Low_complexity Low_complexity 1 51 0 189 0 0 0 chr3 137098208 137098229 -90426349 + (C)n Simple_repeat Simple_repeat 1 21 0 180 0 0 0 chr3 137098265 137098285 -90426293 + (A)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr3 137098285 137098307 -90426271 + GC_rich Low_complexity Low_complexity 1 22 0 231 299 0 23 chr3 137099555 137099642 -90424936 + (CA)n Simple_repeat Simple_repeat 2 86 0 21 36 0 0 chr3 137099826 137099854 -90424724 + AT_rich Low_complexity Low_complexity 1 28 0 23830 117 19 25 chr3 137099956 137104715 -90419863 - L1P5 LINE L1 -1655 4806 4 512 94 21 84 chr3 137105073 137105264 -90419314 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 445 175 47 0 chr3 137105250 137105421 -90419157 + (TATAG)n Simple_repeat Simple_repeat 2 180 0 * 244 196 20 39 chr3 137105426 137105528 -90419050 + (TTATA)n Simple_repeat Simple_repeat 3 102 0 271 287 115 58 chr3 137105911 137106085 -90418493 + MIR SINE MIR 79 262 0 618 273 0 18 chr3 137106841 137107006 -90417572 + MIR SINE MIR 101 262 0 1292 209 32 32 chr3 137107086 137107431 -90417147 - L1ME1 LINE L1 -18 6148 5804 231 336 32 16 chr3 137107633 137107758 -90416820 + MER103 DNA DNA 4 130 -36 774 267 33 14 chr3 137107875 137108085 -90416493 + MIR SINE MIR 46 259 -3 22 0 0 0 chr3 137108585 137108607 -90415971 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr3 137108734 137108763 -90415815 + AT_rich Low_complexity Low_complexity 1 29 0 793 161 0 16 chr3 137110925 137111080 -90413498 + FLAM_C SINE Alu 1 133 0 503 269 48 12 chr3 137111188 137111355 -90413223 + MIR SINE MIR 20 192 -70 288 355 76 12 chr3 137111867 137112039 -90412539 - L2 LINE L2 -1075 2239 2057 255 202 56 45 chr3 137113276 137113365 -90411213 - LTR49-int LTR ERV1 -2454 4075 3986 464 324 7 7 chr3 137113770 137113906 -90410672 - LTR49-int LTR ERV1 -1131 3740 3605 1120 182 89 21 chr3 137114079 137114359 -90410219 - LTR49-int LTR ERV1 -1137 3799 3501 1700 157 14 11 chr3 137114411 137114698 -90409880 + AluJo SINE Alu 1 288 -24 312 90 194 0 chr3 137114723 137114790 -90409788 - LTR49-int LTR ERV1 -1765 4566 4487 585 323 24 39 chr3 137114905 137115249 -90409329 + L1M1 LINE L1 192 1337 -5769 4749 150 3 6 chr3 137115370 137116149 -90408429 + L1PA15 LINE L1 5390 6165 0 946 166 57 0 chr3 137116145 137116356 -90408222 + L1MA5 LINE L1 3191 3413 -2733 * 7653 187 29 5 chr3 137116346 137117867 -90406711 + L1MA5 LINE L1 3652 5212 -934 1712 195 39 12 chr3 137117867 137118283 -90406295 + L1MA5 LINE L1 5874 6300 0 522 292 117 0 chr3 137118306 137118460 -90406118 - MIR SINE MIR -86 176 5 431 169 227 0 chr3 137118759 137118896 -90405682 + L1 LINE L1 5175 5346 -800 306 255 49 0 chr3 137118895 137118997 -90405581 + L1MA8 LINE L1 4927 5033 -1113 * 4398 174 42 19 chr3 137119001 137119933 -90404645 + L1MA8 LINE L1 5338 6290 -1 2063 127 7 0 chr3 137120021 137120313 -90404265 + AluSp SINE Alu 1 294 -19 5660 227 69 24 chr3 137120475 137122427 -90402151 + L1MB1 LINE L1 2016 4075 -2307 2433 218 3 65 chr3 137122430 137123110 -90401468 + L1MB1 LINE L1 4953 5590 -792 258 252 149 0 chr3 137123134 137123241 -90401337 + L1M4c LINE L1 2073 2195 -4189 * 3108 170 44 85 chr3 137123240 137124083 -90400495 + L1MB1 LINE L1 5596 6403 -1 533 251 55 18 chr3 137124086 137124305 -90400273 + L1M4c LINE L1 3954 4180 -2202 403 312 73 15 chr3 137124347 137124552 -90400026 + L1ME3A LINE L1 1598 1814 -4582 2476 199 25 29 chr3 137124647 137125164 -90399414 + MLT2B2 LTR ERVL 1 515 0 678 288 81 0 chr3 137125353 137125710 -90398868 + L1ME3A LINE L1 2186 2534 -3681 1657 276 15 23 chr3 137125856 137126508 -90398070 + L1ME3A LINE L1 2559 3205 -3010 2120 193 16 73 chr3 137126508 137127053 -90397525 + MLT2B1 LTR ERVL 1 514 -6 357 206 114 0 chr3 137127055 137127186 -90397392 + L1ME3A LINE L1 3201 3346 -2869 532 285 81 30 chr3 137127211 137127509 -90397069 + L1ME3A LINE L1 3880 4192 -2023 728 229 100 57 chr3 137127517 137128024 -90396554 + L1ME3A LINE L1 5561 6126 -113 27 49 0 0 chr3 137128124 137128165 -90396413 + AT_rich Low_complexity Low_complexity 1 41 0 204 154 0 26 chr3 137128222 137128261 -90396317 + CT-rich Low_complexity Low_complexity 1 38 0 399 309 110 13 chr3 137128272 137128728 -90395850 + L1 LINE L1 4030 4529 -1617 225 272 193 28 chr3 137128768 137129058 -90395520 - L1MDa LINE L1 -3055 3485 3148 224 404 18 0 chr3 137129071 137129185 -90395393 - L2 LINE L2 -18 3295 3180 510 154 39 0 chr3 137129214 137129318 -90395260 - MER90 LTR ERV1 -362 252 145 2120 119 3 22 chr3 137129704 137130016 -90394562 + AluSx SINE Alu 1 306 -6 33 73 0 0 chr3 137130804 137130872 -90393706 + AT_rich Low_complexity Low_complexity 1 68 0 407 337 155 49 chr3 137133199 137134252 -90390326 + L2 LINE L2 1814 2977 -337 369 239 14 0 chr3 137135455 137135526 -90389052 - L2 LINE L2 -4 3309 3238 1116 212 86 31 chr3 137135543 137135869 -90388709 - MER2 DNA MER2_type 0 344 1 377 278 142 6 chr3 137136032 137136194 -90388384 + MIR SINE MIR 79 262 0 441 211 6 109 chr3 137138042 137138217 -90386361 - L1MEc LINE L1 -3140 3075 2919 605 204 0 26 chr3 137138256 137138369 -90386209 - FLAM_C SINE Alu -33 110 1 394 303 174 40 chr3 137138373 137138521 -90386057 - L1MEc LINE L1 -3303 2912 2785 2592 29 0 10 chr3 137138521 137138830 -90385748 - AluY SINE Alu -5 306 1 394 303 174 40 chr3 137138830 137139008 -90385570 - L1MEc LINE L1 -3430 2785 2542 452 298 28 0 chr3 137139016 137139194 -90385384 - L1MDa LINE L1 -3506 3034 2852 234 320 0 13 chr3 137139222 137139300 -90385278 - MER2 DNA MER2_type -1 344 268 24 53 0 0 chr3 137139300 137139338 -90385240 + AT_rich Low_complexity Low_complexity 1 38 0 1094 142 61 5 chr3 137139339 137139536 -90385042 - MER2 DNA MER2_type -135 210 3 801 288 100 46 chr3 137139576 137140464 -90384114 - L1MDa LINE L1 -3987 2553 1618 327 262 124 28 chr3 137140682 137140827 -90383751 + L1M4 LINE L1 4006 4164 -1982 7118 63 1 2 chr3 137141195 137142499 -90382079 + L1PA8 LINE L1 4867 6170 -2 21 0 0 0 chr3 137142669 137142690 -90381888 + AT_rich Low_complexity Low_complexity 1 21 0 711 185 72 81 chr3 137142836 137143058 -90381520 - L1MB8 LINE L1 -6 6172 5953 4331 170 32 55 chr3 137143060 137144052 -90380526 + L1MA9 LINE L1 5306 6274 -38 252 288 0 34 chr3 137144144 137144262 -90380316 - L1MEc LINE L1 -4714 1682 1569 1761 148 20 13 chr3 137144466 137144771 -90379807 - MER61A LTR ERV1 -36 307 1 353 281 82 53 chr3 137144773 137144911 -90379667 - L1MEc LINE L1 -4870 1335 1203 1713 158 38 10 chr3 137144911 137145203 -90379375 - AluJb SINE Alu -12 300 1 353 281 82 53 chr3 137145203 137145613 -90378965 - L1MEc LINE L1 -5002 1203 771 373 256 105 26 chr3 137145690 137145881 -90378697 + L1MC4 LINE L1 7836 8041 -1 30343 103 10 15 chr3 137146385 137152256 -90372322 + L1PA7 LINE L1 618 6487 0 332 229 48 1 chr3 137152256 137152361 -90372217 + L1MCc LINE L1 54 675 -6266 1375 133 79 12 chr3 137152362 137152602 -90371976 - Tigger2 DNA MER2_type -1 2717 2462 4161 173 14 8 chr3 137152667 137153407 -90371171 - Tigger2 DNA MER2_type -1974 744 1 307 289 39 109 chr3 137153412 137153723 -90370855 + L1MCc LINE L1 503 791 -5631 1004 231 108 3 chr3 137154091 137154398 -90370180 + L1MCc LINE L1 1047 1385 -5038 1706 235 63 26 chr3 137154418 137155186 -90369392 + L1MCc LINE L1 2759 3518 -3423 395 251 87 5 chr3 137155187 137155406 -90369172 + L1MCc LINE L1 3829 4065 -2876 275 252 126 47 chr3 137155706 137156023 -90368555 + HAL1b LINE L1 84 425 -923 4917 165 11 22 chr3 137156174 137157204 -90367374 + L1MB3 LINE L1 5162 6180 -3 282 253 13 27 chr3 137157204 137157279 -90367299 + MLT1J2 LTR MaLR 64 137 -313 25 0 0 0 chr3 137157403 137157428 -90367150 + AT_rich Low_complexity Low_complexity 1 25 0 2115 211 0 59 chr3 137157488 137157994 -90366584 + L1PBa LINE L1 206 681 -6182 6932 113 66 14 chr3 137158012 137159487 -90365091 + L1PBa LINE L1 1297 2846 -4017 1966 146 7 3 chr3 137159488 137159789 -90364789 + AluSq SINE Alu 1 302 -11 358 67 0 33 chr3 137159792 137159852 -90364726 + (GAGAA)n Simple_repeat Simple_repeat 4 61 0 224 200 0 22 chr3 137159854 137159899 -90364679 + G-rich Low_complexity Low_complexity 4 47 0 348 47 0 0 chr3 137159900 137159943 -90364635 + L1PBa LINE L1 2834 2876 -3987 505 150 0 0 chr3 137159943 137160023 -90364555 + AluSp/q SINE Alu 230 309 -4 284 164 33 0 chr3 137160023 137160084 -90364494 + GA-rich Low_complexity Low_complexity 2 64 0 277 105 0 0 chr3 137160085 137160123 -90364455 + L1PBa LINE L1 2833 2870 -3993 600 150 20 0 chr3 137160123 137160223 -90364355 + AluSp/q SINE Alu 194 295 -18 207 0 0 0 chr3 137160228 137160251 -90364327 + (GGAGA)n Simple_repeat Simple_repeat 2 24 0 4906 202 58 8 chr3 137160251 137160348 -90364230 + L1 LINE L1 2120 2211 -3935 1971 138 0 14 chr3 137160348 137160685 -90363893 + AluSx SINE Alu 1 333 0 4906 202 58 8 chr3 137160685 137161759 -90362819 + L1 LINE L1 2211 3353 -2793 2812 232 28 3 chr3 137161765 137162445 -90362133 + L1 LINE L1 3698 4394 -1752 502 193 6 31 chr3 137162458 137162619 -90361959 + GA-rich Low_complexity Low_complexity 2 158 0 7461 149 18 39 chr3 137162623 137164043 -90360535 + L1PA6 LINE L1 684 2074 -4072 12503 46 3 5 chr3 137164044 137165621 -90358957 - L1PA4 LINE L1 -851 5295 3722 6795 38 15 8 chr3 137165621 137166467 -90358111 + L1PA4 LINE L1 5302 6154 -1 5745 106 9 2 chr3 137166514 137167360 -90357218 + L1PA6 LINE L1 2064 2915 -3231 4876 59 3 6 chr3 137167364 137167995 -90356583 + L1PA6 LINE L1 3650 4278 -1868 * 4994 65 1 0 chr3 137167990 137168640 -90355938 - L1P LINE L1 -865 5281 4631 9400 63 7 106 chr3 137168948 137170430 -90354148 - SVA Other Other 0 1386 52 291 28 0 0 chr3 137170430 137170466 -90354112 + (GGGAGA)n Simple_repeat Simple_repeat 1 36 0 473 74 139 0 chr3 137170472 137170578 -90354000 - L1P LINE L1 -1510 4636 4501 3146 68 5 0 chr3 137170588 137171000 -90353578 + L1PA5 LINE L1 5736 6149 -5 8436 67 3 1 chr3 137171000 137172860 -90351718 + L1PA6 LINE L1 4269 6133 -21 225 0 0 0 chr3 137172863 137172888 -90351690 + (TAA)n Simple_repeat Simple_repeat 3 27 0 1578 218 43 8 chr3 137172919 137173318 -90351260 - L1MB8 LINE L1 -10 6168 5756 569 80 0 0 chr3 137173326 137173401 -90351177 + FRAM SINE Alu 42 116 -60 1383 230 51 19 chr3 137173469 137173806 -90350772 - L1MEc LINE L1 -2500 3882 3527 2294 89 0 32 chr3 137173806 137174120 -90350458 - AluSc SINE Alu -5 304 1 1383 230 51 19 chr3 137174120 137174212 -90350366 - L1MEc LINE L1 -2855 3527 3439 305 125 97 0 chr3 137174216 137174288 -90350290 - L1MA9 LINE L1 0 6312 6234 952 173 53 58 chr3 137174317 137174560 -90350018 - L1MA9 LINE L1 -300 6012 5771 225 333 29 0 chr3 137174583 137174652 -90349926 - MIR SINE MIR -104 104 34 287 197 0 0 chr3 137174783 137174844 -90349734 - L1MA9 LINE L1 -949 5197 5137 * 1272 167 4 37 chr3 137174843 137175060 -90349518 - L1MA9 LINE L1 -1393 4753 4545 1791 109 98 15 chr3 137175060 137175334 -90349244 - AluSx SINE Alu -14 298 2 1272 167 4 37 chr3 137175334 137175386 -90349192 - L1MA9 LINE L1 -1601 4545 4493 463 252 28 78 chr3 137175385 137175552 -90349026 - L1MEc LINE L1 -2933 3449 3304 * 1338 200 64 24 chr3 137175552 137175732 -90348846 - AluJb SINE Alu -5 307 109 297 0 0 0 chr3 137175732 137175765 -90348813 + (ATTG)n Simple_repeat Simple_repeat 4 36 0 1338 200 64 24 chr3 137175765 137175879 -90348699 - AluJb SINE Alu -203 109 1 463 252 28 78 chr3 137175879 137176033 -90348545 - L1MEc LINE L1 -3078 3304 3144 * 658 278 19 22 chr3 137176024 137176369 -90348209 - L1MEc LINE L1 -3797 2585 2301 22796 110 11 10 chr3 137176386 137180736 -90343842 - L1PA8 LINE L1 -2 6170 1823 1456 143 0 0 chr3 137180736 137180952 -90343626 - AluSx SINE Alu -96 216 1 22796 110 11 10 chr3 137180952 137180967 -90343611 - L1PA8 LINE L1 -4349 1823 1810 32 43 0 0 chr3 137181016 137181062 -90343516 + AT_rich Low_complexity Low_complexity 1 46 0 1246 275 90 21 chr3 137181359 137181970 -90342608 - L1MEc LINE L1 -4553 1831 1179 2256 100 0 3 chr3 137182853 137183144 -90341434 + AluY SINE Alu 1 290 -21 2022 196 20 13 chr3 137184049 137184442 -90340136 - MSTD LTR MaLR 0 396 1 24 53 0 0 chr3 137184775 137184813 -90339765 + AT_rich Low_complexity Low_complexity 1 38 0 26 50 0 0 chr3 137185363 137185403 -90339175 + AT_rich Low_complexity Low_complexity 1 40 0 1979 137 0 13 chr3 137185424 137185724 -90338854 + AluSx SINE Alu 1 296 -16 24 32 0 0 chr3 137185823 137185854 -90338724 + AT_rich Low_complexity Low_complexity 1 31 0 7400 46 0 0 chr3 137186048 137187389 -90337189 + L1PA5 LINE L1 4811 6151 -3 4712 65 13 19 chr3 137187675 137188309 -90336269 - L1PA7 LINE L1 -11 6143 5514 10464 49 6 0 chr3 137188329 137190413 -90334165 - L1PA5 LINE L1 0 6154 4064 23325 118 14 51 chr3 137190413 137190464 -90334114 - L1PA7 LINE L1 -625 5529 5478 2232 101 0 10 chr3 137190464 137190770 -90333808 - AluSc SINE Alu 0 309 7 23325 118 14 51 chr3 137190770 137196532 -90328046 - L1PA7 LINE L1 -676 5478 12 533 89 21 84 chr3 137196896 137197087 -90327491 + (TATAA)n Simple_repeat Simple_repeat 1 179 0 415 165 44 6 chr3 137197048 137197206 -90327372 + (TATAG)n Simple_repeat Simple_repeat 2 165 0 * 244 196 20 39 chr3 137197211 137197313 -90327265 + (TTATA)n Simple_repeat Simple_repeat 3 102 0 260 262 175 19 chr3 137197696 137197799 -90326779 + MIR SINE MIR 79 197 -65 618 273 0 18 chr3 137198626 137198791 -90325787 + MIR SINE MIR 101 262 0 1292 209 32 32 chr3 137198871 137199216 -90325362 - L1ME1 LINE L1 -18 6148 5804 231 336 32 16 chr3 137199418 137199543 -90325035 + MER103 DNA DNA 4 130 -36 774 267 33 14 chr3 137199660 137199870 -90324708 + MIR SINE MIR 46 259 -3 22 0 0 0 chr3 137200370 137200392 -90324186 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr3 137200519 137200548 -90324030 + AT_rich Low_complexity Low_complexity 1 29 0 793 161 0 16 chr3 137202710 137202865 -90321713 + FLAM_C SINE Alu 1 133 0 503 269 48 12 chr3 137202973 137203140 -90321438 + MIR SINE MIR 20 192 -70 278 360 76 12 chr3 137203652 137203824 -90320754 - L2 LINE L2 -1075 2239 2057 255 202 56 45 chr3 137205060 137205149 -90319429 - PABL_B-int LTR ERV1 -2454 4075 3986 481 319 7 9 chr3 137205539 137205692 -90318886 - PABL_B-int LTR ERV1 -531 4405 3605 269 227 0 76 chr3 137205776 137205842 -90318736 - PABL_B-int LTR ERV1 -897 5049 4989 1215 217 86 82 chr3 137205863 137206195 -90318383 - PABL_B-int LTR ERV1 -886 5377 5048 1700 157 14 11 chr3 137206195 137206482 -90318096 + AluJo SINE Alu 1 288 -24 1215 217 86 82 chr3 137206482 137207189 -90317389 - PABL_B-int LTR ERV1 -1215 5048 3501 401 159 28 65 chr3 137207236 137207343 -90317235 - PABL_B-int LTR ERV1 -2867 3731 3629 1299 198 84 80 chr3 137207431 137207491 -90317087 - PABL_B-int LTR ERV1 -2609 4067 4009 2191 119 3 3 chr3 137207491 137207801 -90316777 + AluSx SINE Alu 1 310 -2 1299 198 84 80 chr3 137207801 137208432 -90316146 - PABL_B-int LTR ERV1 -2667 4009 1585 1716 194 10 3 chr3 137208440 137208750 -90315828 - AluJo SINE Alu 0 312 1 845 202 88 26 chr3 137208902 137209347 -90315231 - PABL_B-int LTR ERV1 -3211 3120 1197 1243 208 43 35 chr3 137209407 137209778 -90314800 - PABL_B-int LTR ERV1 -3211 3120 1307 359 250 29 29 chr3 137210237 137210341 -90314237 - PABL_B-int LTR ERV1 -5418 1704 1601 298 351 0 27 chr3 137210838 137210986 -90313592 - PABL_B-int LTR ERV1 -5353 910 767 2154 193 85 15 chr3 137211545 137212017 -90312561 - LTR45B LTR ERV1 0 603 1 312 191 72 29 chr3 137213364 137213517 -90311061 + L2 LINE L2 3107 3309 -4 32 0 0 0 chr3 137213885 137213917 -90310661 + AT_rich Low_complexity Low_complexity 1 32 0 248 136 0 0 chr3 137213918 137213962 -90310616 - L1MB4 LINE L1 -2 6178 6135 190 312 65 21 chr3 137214070 137214163 -90310415 + L2 LINE L2 2295 2391 -923 411 21 0 0 chr3 137214713 137214761 -90309817 + (CA)n Simple_repeat Simple_repeat 2 49 0 1691 195 52 9 chr3 137215203 137215531 -90309047 - MSTB1 LTR MaLR 0 432 91 4666 214 62 30 chr3 137215557 137217027 -90307551 - MSTB1-int LTR MaLR 0 1580 1 2024 138 94 27 chr3 137217027 137217432 -90307146 - MSTB1 LTR MaLR 0 432 1 22 35 0 0 chr3 137217451 137217480 -90307098 + AT_rich Low_complexity Low_complexity 1 29 0 3539 15 2 0 chr3 137218356 137218768 -90305810 + L1PA3 LINE L1 5743 6155 0 232 313 81 20 chr3 137218970 137219069 -90305509 + MER91C DNA MER1_type 36 140 0 233 361 48 18 chr3 137219668 137219834 -90304744 - L3 LINE CR1 -5 1572 1402 2344 244 74 25 chr3 137219882 137220261 -90304317 + L1MDa LINE L1 1 360 -6180 444 37 0 0 chr3 137220261 137220315 -90304263 + (CA)n Simple_repeat Simple_repeat 2 55 0 2344 244 74 25 chr3 137220315 137220583 -90303995 + L1MDa LINE L1 360 990 -5550 3789 172 104 51 chr3 137220596 137221683 -90302895 + L1MDa LINE L1 1544 2685 -3855 484 308 45 49 chr3 137221707 137221973 -90302605 + L1M3d LINE L1 413 677 -5626 3035 246 55 33 chr3 137222278 137222471 -90302107 + L1M3d LINE L1 800 987 -5395 3098 140 40 0 chr3 137222471 137222965 -90301613 + MER75 DNA T2_type 1 514 0 3035 246 55 33 chr3 137222965 137223346 -90301232 + L1M3d LINE L1 987 1358 -5024 237 33 0 0 chr3 137223346 137223376 -90301202 + (GA)n Simple_repeat Simple_repeat 1 30 0 3035 246 55 33 chr3 137223376 137224932 -90299646 + L1M3d LINE L1 1358 2972 -3410 2391 120 3 15 chr3 137224932 137225274 -90299304 + MER1B DNA MER1_type 1 338 -1 21 57 0 0 chr3 137225482 137225517 -90299061 + AT_rich Low_complexity Low_complexity 1 35 0 1690 225 44 19 chr3 137225523 137225992 -90298586 + L1ME1 LINE L1 5685 6161 -5 714 249 20 5 chr3 137226041 137226242 -90298336 - L1M4 LINE L1 -1286 4860 4657 5457 203 37 41 chr3 137226252 137226946 -90297632 - L1PA16 LINE L1 -9 6157 5462 2139 131 0 6 chr3 137226946 137227260 -90297318 - AluSx SINE Alu 0 312 1 5457 203 37 41 chr3 137227260 137229165 -90295413 - L1PA16 LINE L1 -704 5462 3574 1932 140 0 20 chr3 137230974 137231301 -90293277 + AluSx SINE Alu 1 321 0 24 0 0 0 chr3 137231382 137231406 -90293172 + AT_rich Low_complexity Low_complexity 1 24 0 1253 216 60 1 chr3 137231588 137232050 -90292528 - MLT1E1 LTR MaLR -4 650 104 1560 171 43 141 chr3 137232097 137232533 -90292045 - L1MD3 LINE L1 0 8041 7703 2093 51 6 82 chr3 137232533 137232849 -90291729 - AluY SINE Alu -19 292 1 1560 171 43 141 chr3 137232849 137233069 -90291509 - L1MD3 LINE L1 -338 7703 7463 259 364 114 0 chr3 137233460 137233600 -90290978 + MIR SINE MIR 104 259 -3 278 77 0 0 chr3 137234354 137234393 -90290185 - L1MA8 LINE L1 -44 6247 6209 404 222 65 184 chr3 137234857 137235150 -90289428 + MIR SINE MIR 5 262 0 194 125 0 25 chr3 137235588 137235628 -90288950 + (CA)n Simple_repeat Simple_repeat 1 39 0 31 88 0 0 chr3 137235692 137235772 -90288806 + AT_rich Low_complexity Low_complexity 1 80 0 1796 169 7 0 chr3 137236543 137236827 -90287751 + AluJo SINE Alu 5 290 -22 246 253 0 25 chr3 137237435 137237514 -90287064 - L2 LINE L2 -773 2541 2465 25 51 0 0 chr3 137237641 137237680 -90286898 + AT_rich Low_complexity Low_complexity 1 39 0 25 65 0 0 chr3 137238170 137238216 -90286362 + AT_rich Low_complexity Low_complexity 1 46 0 431 259 32 39 chr3 137238317 137238609 -90285969 - L1MDb LINE L1 -5063 1346 1046 588 313 107 10 chr3 137238922 137239213 -90285365 - L1MC/D LINE L1 -2236 5572 5254 391 291 96 72 chr3 137239225 137239641 -90284937 - L1MC/D LINE L1 -907 5239 4814 865 283 50 34 chr3 137240197 137240674 -90283904 + L1M4 LINE L1 3515 3999 -2147 1275 246 25 19 chr3 137240743 137241104 -90283474 - MLT1A1 LTR MaLR -2 363 1 1830 182 0 35 chr3 137241110 137241244 -90283334 - MLT1A1-int LTR MaLR -7 1728 1591 2020 130 25 0 chr3 137241244 137241529 -90283049 + AluSx SINE Alu 1 292 -20 1830 182 0 35 chr3 137241529 137241735 -90282843 - MLT1A1-int LTR MaLR -144 1591 1400 * 6862 96 11 41 chr3 137241695 137247462 -90277116 + L1PA7 LINE L1 785 6466 -3 426 250 57 117 chr3 137248240 137248540 -90276038 - LTR40a LTR ERVL -1 518 237 3430 216 97 28 chr3 137249101 137249359 -90275219 - L1MC4 LINE L1 -202 7840 7601 2111 134 0 0 chr3 137249359 137249650 -90274928 - AluSx SINE Alu -21 291 1 3430 216 97 28 chr3 137249650 137250456 -90274122 - L1MC4 LINE L1 -441 7601 6703 245 193 0 0 chr3 137250584 137250641 -90273937 - L1MEc LINE L1 -2191 4976 4920 1022 138 116 16 chr3 137250642 137250831 -90273747 - MSTA LTR MaLR 0 428 221 2747 250 53 66 chr3 137250842 137253792 -90270786 - L1M4 LINE L1 -3304 3863 1294 1623 241 57 15 chr3 137253860 137254407 -90270171 - L1M4 LINE L1 -1195 5972 5403 * 2197 256 84 28 chr3 137254405 137255869 -90268709 - L1MEc LINE L1 -3476 3691 2195 850 238 112 24 chr3 137255901 137255941 -90268637 - L1MEc LINE L1 -5237 2111 2076 1967 193 25 6 chr3 137255941 137256299 -90268279 - MLT1A1 LTR MaLR 0 365 1 850 238 112 24 chr3 137256299 137256679 -90267899 - L1MEc LINE L1 -5272 2076 1654 1211 321 58 15 chr3 137256685 137257233 -90267345 - L1MEc LINE L1 -5764 1584 1013 330 320 51 45 chr3 137257532 137257710 -90266868 - MIR SINE MIR -46 216 38 21 0 0 0 chr3 137259271 137259292 -90265286 + AT_rich Low_complexity Low_complexity 1 21 0 676 216 0 0 chr3 137259691 137259828 -90264750 + FLAM_C SINE Alu 1 137 0 38 61 0 0 chr3 137259829 137259895 -90264683 + AT_rich Low_complexity Low_complexity 1 66 0 23 0 0 0 chr3 137259929 137259952 -90264626 + AT_rich Low_complexity Low_complexity 1 23 0 311 176 0 0 chr3 137260385 137260436 -90264142 - Charlie5 DNA MER1_type -2521 91 41 24 0 0 0 chr3 137260556 137260580 -90263998 + AT_rich Low_complexity Low_complexity 1 24 0 56 29 0 0 chr3 137260881 137260951 -90263627 + AT_rich Low_complexity Low_complexity 1 70 0 1007 197 48 0 chr3 137262425 137262633 -90261945 + MER58B DNA MER1_type 124 341 0 351 44 0 0 chr3 137262781 137262826 -90261752 + (TG)n Simple_repeat Simple_repeat 2 46 0 253 286 107 64 chr3 137264109 137264249 -90260329 - MIR SINE MIR -87 175 30 225 380 0 9 chr3 137264622 137264730 -90259848 + MIR SINE MIR 69 175 -87 201 298 58 21 chr3 137264744 137264892 -90259686 - MIR SINE MIR -73 135 36 387 327 175 11 chr3 137265305 137265568 -90259010 - L2 LINE L2 -3 3310 3005 897 296 125 33 chr3 137265611 137266090 -90258488 + L1ME LINE L1 53 575 -5821 * 1956 204 31 47 chr3 137266084 137266446 -90258132 + L1M4 LINE L1 4095 4444 -1702 2405 72 0 0 chr3 137266446 137266739 -90257839 + AluSg SINE Alu 1 293 -17 1956 204 31 47 chr3 137266739 137266995 -90257583 + L1M4 LINE L1 4444 4703 -1443 4052 165 6 2 chr3 137266995 137267823 -90256755 - L1PA15 LINE L1 -269 5896 5068 981 152 6 0 chr3 137267822 137267980 -90256598 + L1PA15 LINE L1 5948 6106 -59 * 13372 179 16 18 chr3 137267975 137271933 -90252645 + L1PB1 LINE L1 2208 6151 0 1237 250 18 51 chr3 137271947 137272395 -90252183 + L1ME1 LINE L1 5722 6327 -7 1570 302 94 73 chr3 137272426 137272474 -90252104 - L2 LINE L2 -339 2975 2929 2209 117 0 3 chr3 137272474 137272781 -90251797 + AluSq SINE Alu 1 306 -7 1570 302 94 73 chr3 137272781 137273675 -90250903 - L2 LINE L2 -385 2929 1990 216 0 0 0 chr3 137273675 137273699 -90250879 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1570 302 94 73 chr3 137273699 137274174 -90250404 - L2 LINE L2 -1324 1990 1527 466 230 20 20 chr3 137274549 137274649 -90249929 + MER20 DNA MER1_type 8 107 -112 342 0 0 0 chr3 137276098 137276136 -90248442 + (TG)n Simple_repeat Simple_repeat 1 38 0 375 231 14 90 chr3 137276218 137276367 -90248211 + L1ME LINE L1 767 885 -5320 2046 126 0 3 chr3 137276367 137276652 -90247926 + AluSx SINE Alu 1 284 -28 375 231 14 90 chr3 137276652 137276792 -90247786 + L1ME LINE L1 885 1034 -5171 2145 121 15 67 chr3 137276793 137277199 -90247379 - L1M3 LINE L1 -427 5741 5357 856 248 5 0 chr3 137277193 137277399 -90247179 + L1MB1 LINE L1 4963 5169 -977 * 2431 152 12 7 chr3 137277399 137277821 -90246757 + L1MB1 LINE L1 5736 6159 -9 261 267 40 22 chr3 137278364 137278515 -90246063 + L1M3de LINE L1 1081 1435 -4701 * 764 271 27 18 chr3 137278514 137278600 -90245978 + L1ME LINE L1 1307 1391 -5005 1778 149 43 7 chr3 137278600 137278901 -90245677 + AluJb SINE Alu 1 312 0 764 271 27 18 chr3 137278901 137279142 -90245436 + L1ME LINE L1 1391 1637 -4759 1406 255 57 41 chr3 137279152 137279834 -90244744 + L1ME LINE L1 1687 2379 -4017 * 13910 41 3 1 chr3 137279832 137281555 -90243023 - L1PA4 LINE L1 -1383 4763 3036 7504 27 9 0 chr3 137281555 137282933 -90241645 + L1PA4 LINE L1 4765 6155 0 4669 257 78 9 chr3 137282933 137284920 -90239658 + L1ME LINE L1 2334 4458 -1757 5409 205 66 52 chr3 137284926 137286972 -90237606 + L1ME LINE L1 11 2193 -4766 1311 98 41 0 chr3 137286972 137287166 -90237412 + L1PA10 LINE L1 5962 6163 -5 5409 205 66 52 chr3 137287166 137287394 -90237184 + L1ME LINE L1 2193 2416 -4543 1412 248 69 43 chr3 137287557 137288523 -90236055 + L1ME LINE L1 2488 3435 -3522 * 2235 249 84 35 chr3 137288520 137289224 -90235354 + L1ME LINE L1 5246 5914 -1061 2177 95 0 17 chr3 137289224 137289520 -90235058 + AluY SINE Alu 1 291 -20 2199 119 0 0 chr3 137289522 137289815 -90234763 + AluSx SINE Alu 1 293 -19 2235 249 84 35 chr3 137289815 137290185 -90234393 + L1ME LINE L1 5914 6378 -597 265 252 50 34 chr3 137290241 137290360 -90234218 + L1ME LINE L1 6487 6607 -325 7034 37 0 0 chr3 137290407 137291265 -90233313 + L1P LINE L1 4310 5167 -979 198 0 0 0 chr3 137291265 137291287 -90233291 + (T)n Simple_repeat Simple_repeat 1 22 0 6326 75 18 45 chr3 137291354 137292334 -90232244 - SVA Other Other 0 1386 433 1151 121 45 19 chr3 137292351 137292615 -90231963 - SVA Other Other -520 866 596 5566 72 25 54 chr3 137292644 137293478 -90231100 - SVA Other Other -520 866 57 459 0 0 0 chr3 137293478 137293529 -90231049 + (GGGAGA)n Simple_repeat Simple_repeat 5 55 0 7447 34 2 2 chr3 137293537 137294542 -90230036 + L1PA4 LINE L1 5151 6155 0 2229 118 7 3 chr3 137294613 137294918 -90229660 + AluSx SINE Alu 1 306 -6 345 301 62 28 chr3 137295372 137295548 -90229030 + MIR SINE MIR 55 236 -26 403 337 12 48 chr3 137296189 137296355 -90228223 + MIR3 SINE MIR 42 201 -7 26 0 0 0 chr3 137296767 137296793 -90227785 + AT_rich Low_complexity Low_complexity 1 26 0 948 128 0 0 chr3 137297069 137297202 -90227376 + FLAM_C SINE Alu 1 133 0 25 0 0 0 chr3 137297202 137297227 -90227351 + AT_rich Low_complexity Low_complexity 1 25 0 821 103 0 8 chr3 137298728 137298845 -90225733 + FLAM_C SINE Alu 1 116 -17 21 0 0 0 chr3 137298855 137298876 -90225702 + AT_rich Low_complexity Low_complexity 1 21 0 1166 275 115 8 chr3 137298878 137299503 -90225075 - L1M4 LINE L1 -1449 4697 4006 2302 81 7 0 chr3 137299595 137299892 -90224686 - AluY SINE Alu -12 299 1 549 204 29 0 chr3 137300442 137300545 -90224033 - MER5A DNA MER1_type -83 106 1 5436 114 19 2 chr3 137300746 137301090 -90223488 - L1PA16 LINE L1 -9 6157 5820 2271 91 10 0 chr3 137301090 137301387 -90223191 + AluSp SINE Alu 1 300 -13 5436 114 19 2 chr3 137301387 137302271 -90222307 - L1PA16 LINE L1 -346 5820 4966 246 300 10 40 chr3 137302479 137302579 -90221999 - L2 LINE L2 0 3272 3176 267 336 172 33 chr3 137302665 137302787 -90221791 + MER91A DNA MER1_type 31 169 -27 457 302 96 24 chr3 137304630 137304863 -90219715 - MIR SINE MIR 0 262 11 622 259 142 43 chr3 137307124 137307356 -90217222 - MIR SINE MIR 0 262 8 2259 109 0 3 chr3 137307360 137307664 -90216914 + AluSx SINE Alu 1 303 -9 271 150 33 0 chr3 137307900 137307960 -90216618 + (TA)n Simple_repeat Simple_repeat 1 62 0 414 315 99 30 chr3 137308240 137308472 -90216106 + L3 LINE CR1 1249 1496 -81 1906 124 7 0 chr3 137308477 137308750 -90215828 + AluSx SINE Alu 5 279 -33 6687 202 46 25 chr3 137308996 137312183 -90212395 + L1MA3 LINE L1 601 2906 -3957 * 11249 154 34 40 chr3 137312174 137312784 -90211794 + L1PA13 LINE L1 2894 3506 -2657 1957 141 27 38 chr3 137312784 137313152 -90211426 + THE1B LTR MaLR 1 364 0 11249 154 34 40 chr3 137313152 137315108 -90209470 + L1PA13 LINE L1 3506 5473 -690 1719 188 7 0 chr3 137315108 137315395 -90209183 + AluJb SINE Alu 1 289 -23 192 111 0 0 chr3 137315400 137315436 -90209142 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 11249 154 34 40 chr3 137315436 137316160 -90208418 + L1PA13 LINE L1 5477 6163 0 10570 184 32 62 chr3 137316162 137317255 -90207323 + L1MA3 LINE L1 2919 4043 -2978 1730 103 5 0 chr3 137317255 137317478 -90207100 + AluSx SINE Alu 1 224 -88 10570 184 32 62 chr3 137317478 137317982 -90206596 + L1MA3 LINE L1 4043 4561 -2460 185 81 0 27 chr3 137317982 137318019 -90206559 + (CAAAA)n Simple_repeat Simple_repeat 5 40 0 10570 184 32 62 chr3 137318019 137319220 -90205358 + L1MA3 LINE L1 4561 5539 -1482 2794 61 3 13 chr3 137319220 137319595 -90204983 - L1PA6 LINE L1 0 6154 5784 10570 184 32 62 chr3 137319595 137321035 -90203543 + L1MA3 LINE L1 5539 7021 0 376 191 0 0 chr3 137321044 137321107 -90203471 + MER8 DNA MER2_type 177 239 0 7549 27 16 0 chr3 137321240 137322235 -90202343 - L1PA3 LINE L1 0 6155 5156 8850 38 0 0 chr3 137322235 137323309 -90201269 + L1PA3 LINE L1 4084 5157 -989 207 204 0 0 chr3 137323841 137323885 -90200693 + (TA)n Simple_repeat Simple_repeat 1 44 0 6305 65 1 0 chr3 137323909 137324705 -90199873 - L1PA6 LINE L1 -6 6148 5352 18284 44 1 4 chr3 137324850 137327932 -90196646 - L1PA4 LINE L1 -3 6152 3075 7194 114 27 0 chr3 137328032 137329198 -90195380 + L1M4 LINE L1 2479 3675 -3890 2667 199 23 9 chr3 137329310 137330421 -90194157 - L1M4 LINE L1 -3473 2909 1681 19733 54 1 1 chr3 137330522 137333038 -90191540 - L1P LINE L1 -3000 3146 632 5689 214 22 49 chr3 137333043 137334488 -90190090 - L1 LINE L1 -785 5361 3956 2300 64 4 4 chr3 137334488 137334769 -90189809 - AluY SINE Alu -10 301 21 12885 68 7 0 chr3 137335379 137337002 -90187576 - HERVK9 LTR ERVK -571 5345 3711 2190 49 0 0 chr3 137337002 137337269 -90187309 - HERVK9 LTR ERVK -3130 2786 2520 3110 211 27 67 chr3 137337369 137338455 -90186123 + L1M4 LINE L1 4396 5437 -2128 2441 223 35 9 chr3 137338444 137339130 -90185448 + L1M4 LINE L1 5647 6350 -1215 * 992 236 10 10 chr3 137339152 137339449 -90185129 + L1M4 LINE L1 6454 6750 -815 9980 199 53 21 chr3 137339452 137341426 -90183152 + L1M1 LINE L1 16 2052 -5513 5644 128 59 11 chr3 137341527 137342209 -90182369 + L1MA1 LINE L1 5258 6003 -299 2035 122 141 13 chr3 137342209 137342586 -90181992 + MSTA LTR MaLR 3 427 -1 5644 128 59 11 chr3 137342586 137342892 -90181686 + L1MA1 LINE L1 6003 6293 -9 32 57 0 0 chr3 137342892 137342945 -90181633 + AT_rich Low_complexity Low_complexity 1 53 0 29769 92 7 12 chr3 137344056 137349240 -90175338 + L1P LINE L1 11 5204 -942 7400 182 31 38 chr3 137349358 137349691 -90174887 - L1M4c LINE L1 -4625 1759 1425 1540 186 0 66 chr3 137349691 137350008 -90174570 - AluJo SINE Alu -6 306 11 7400 182 31 38 chr3 137350008 137351426 -90173152 - L1M4c LINE L1 -4959 1425 20 942 193 70 48 chr3 137351416 137351774 -90172804 - L1M3c LINE L1 -4841 1300 935 * 11998 176 20 19 chr3 137351768 137352010 -90172568 - L1PA13 LINE L1 -4333 2464 2224 1780 129 182 35 chr3 137352010 137352177 -90172401 + MSTA LTR MaLR 1 142 -286 2091 120 3 10 chr3 137352177 137352468 -90172110 + AluSx SINE Alu 1 289 -23 1780 129 182 35 chr3 137352468 137352673 -90171905 + MSTA LTR MaLR 142 428 0 11998 176 20 19 chr3 137352673 137354881 -90169697 - L1PA13 LINE L1 -4573 2224 2 1990 251 56 27 chr3 137355175 137355769 -90168809 + L1M2b LINE L1 46 656 -6553 * 4233 233 41 51 chr3 137355763 137357014 -90167564 + L1M2b LINE L1 1297 2534 -4675 1383 146 8 52 chr3 137357014 137357281 -90167297 + L1PB4 LINE L1 5902 6156 0 4233 233 41 51 chr3 137357281 137357422 -90167156 + L1M2b LINE L1 2534 2675 -4534 482 293 62 67 chr3 137357520 137357745 -90166833 + MIR SINE MIR 13 236 -26 765 217 131 27 chr3 137358177 137358398 -90166180 - MIR SINE MIR 0 262 19 6392 75 8 2 chr3 137358433 137359348 -90165230 - L1PA8 LINE L1 -1100 5046 4127 6961 46 20 0 chr3 137359348 137360430 -90164148 + L1PA8 LINE L1 5060 6159 -13 25 65 0 0 chr3 137361702 137361748 -90162830 + AT_rich Low_complexity Low_complexity 1 46 0 1294 192 4 13 chr3 137361931 137362165 -90162413 - AluJo SINE Alu -18 294 63 266 340 163 0 chr3 137362230 137362371 -90162207 + MIR3 SINE MIR 34 197 -11 323 292 212 0 chr3 137363129 137363266 -90161312 + MIR3 SINE MIR 19 184 -24 21 89 0 0 chr3 137364625 137364681 -90159897 + AT_rich Low_complexity Low_complexity 1 56 0 715 206 0 0 chr3 137365093 137365219 -90159359 + FLAM_C SINE Alu 1 126 -7 30 0 0 0 chr3 137365219 137365249 -90159329 + AT_rich Low_complexity Low_complexity 1 30 0 1370 149 165 11 chr3 137365249 137365510 -90159068 + AluJo SINE Alu 2 302 0 583 189 88 0 chr3 137365510 137365658 -90158920 + L1MC2 LINE L1 6182 6342 -2 224 336 129 92 chr3 137366191 137366475 -90158103 - L2 LINE L2 0 3272 2967 774 181 0 0 chr3 137366475 137366602 -90157976 + FLAM_C SINE Alu 1 127 -6 224 336 129 92 chr3 137366602 137366728 -90157850 - L2 LINE L2 -305 2967 2847 30 45 0 0 chr3 137366834 137366878 -90157700 + AT_rich Low_complexity Low_complexity 1 44 0 22 56 0 0 chr3 137367107 137367143 -90157435 + AT_rich Low_complexity Low_complexity 1 36 0 2603 162 2 0 chr3 137367230 137367644 -90156934 - MSTB LTR MaLR -11 415 1 21 0 0 0 chr3 137367943 137367964 -90156614 + AT_rich Low_complexity Low_complexity 1 21 0 853 187 33 11 chr3 137368320 137368502 -90156076 - L1PB4 LINE L1 -159 5997 5812 * 35707 88 9 7 chr3 137368497 137374628 -90149950 - L1PA6 LINE L1 -1 6153 11 2242 149 41 2 chr3 137374819 137374864 -90149714 - L1PB4 LINE L1 -319 5837 5795 342 0 0 0 chr3 137374864 137374902 -90149676 + (TA)n Simple_repeat Simple_repeat 2 39 0 2242 149 41 2 chr3 137374902 137375291 -90149287 - L1PB4 LINE L1 -361 5795 5386 36149 47 1 1 chr3 137425299 137430379 -90094199 - L1P2 LINE L1 -446 5709 632 35043 98 11 9 chr3 137430384 137435724 -90088854 - L1PB4 LINE L1 -785 5361 11 32 57 0 0 chr3 137436835 137436888 -90087690 + AT_rich Low_complexity Low_complexity 1 53 0 5366 151 41 18 chr3 137436888 137437194 -90087384 - L1MA1 LINE L1 -9 7712 7415 2047 122 141 13 chr3 137437194 137437571 -90087007 - MSTA LTR MaLR -1 427 3 5366 151 41 18 chr3 137437571 137438865 -90085713 - L1MA1 LINE L1 -306 7415 6076 298 77 90 0 chr3 137438871 137438949 -90085629 + (TATAA)n Simple_repeat Simple_repeat 5 89 0 2076 160 29 0 chr3 137438966 137439584 -90084994 - L1MA1 LINE L1 -3663 3902 3268 368 287 10 38 chr3 137439632 137439873 -90084705 + C-rich Low_complexity Low_complexity 1 234 0 234 261 43 0 chr3 137439898 137439990 -90084588 + (CCCCG)n Simple_repeat Simple_repeat 2 97 0 16368 164 38 15 chr3 137440180 137443250 -90081328 - L1MA1 LINE L1 -4408 3157 16 7441 197 64 28 chr3 137443253 137446995 -90077583 - L1M4 LINE L1 -815 5567 1386 1540 186 0 66 chr3 137446995 137447312 -90077266 - AluJo SINE Alu -6 306 11 7441 197 64 28 chr3 137447312 137448730 -90075848 - L1M4 LINE L1 -4996 1386 20 942 193 70 48 chr3 137448720 137449078 -90075500 - L1M3c LINE L1 -4841 1300 935 * 11998 176 20 19 chr3 137449072 137449314 -90075264 - L1PA13 LINE L1 -4333 2464 2224 1780 129 182 35 chr3 137449314 137449481 -90075097 + MSTA LTR MaLR 1 142 -286 2091 120 3 10 chr3 137449481 137449772 -90074806 + AluSx SINE Alu 1 289 -23 1780 129 182 35 chr3 137449772 137449977 -90074601 + MSTA LTR MaLR 142 428 0 11998 176 20 19 chr3 137449977 137452185 -90072393 - L1PA13 LINE L1 -4573 2224 2 1990 251 56 27 chr3 137452479 137453073 -90071505 + L1M2b LINE L1 46 656 -6553 * 4203 232 41 52 chr3 137453067 137454319 -90070259 + L1M2b LINE L1 1297 2534 -4675 1383 146 8 52 chr3 137454319 137454586 -90069992 + L1PB4 LINE L1 5902 6156 0 4203 232 41 52 chr3 137454586 137454727 -90069851 + L1M2b LINE L1 2534 2675 -4534 482 293 62 67 chr3 137454825 137455050 -90069528 + MIR SINE MIR 13 236 -26 765 217 131 27 chr3 137455482 137455703 -90068875 - MIR SINE MIR 0 262 19 6392 75 8 2 chr3 137455738 137456653 -90067925 - L1PA8 LINE L1 -1100 5046 4127 6961 46 20 0 chr3 137456653 137457735 -90066843 + L1PA8 LINE L1 5060 6159 -13 25 65 0 0 chr3 137459007 137459053 -90065525 + AT_rich Low_complexity Low_complexity 1 46 0 1294 192 4 13 chr3 137459236 137459470 -90065108 - AluJo SINE Alu -18 294 63 266 340 163 0 chr3 137459535 137459676 -90064902 + MIR3 SINE MIR 34 197 -11 323 292 212 0 chr3 137460434 137460571 -90064007 + MIR3 SINE MIR 19 184 -24 21 89 0 0 chr3 137461930 137461986 -90062592 + AT_rich Low_complexity Low_complexity 1 56 0 715 206 0 0 chr3 137462398 137462524 -90062054 + FLAM_C SINE Alu 1 126 -7 30 0 0 0 chr3 137462524 137462554 -90062024 + AT_rich Low_complexity Low_complexity 1 30 0 1370 149 165 11 chr3 137462554 137462815 -90061763 + AluJo SINE Alu 2 302 0 583 189 88 0 chr3 137462815 137462963 -90061615 + L1MC2 LINE L1 6182 6342 -2 224 336 129 92 chr3 137463496 137463780 -90060798 - L2 LINE L2 0 3272 2967 774 181 0 0 chr3 137463780 137463907 -90060671 + FLAM_C SINE Alu 1 127 -6 224 336 129 92 chr3 137463907 137464033 -90060545 - L2 LINE L2 -305 2967 2847 30 45 0 0 chr3 137464139 137464183 -90060395 + AT_rich Low_complexity Low_complexity 1 44 0 22 56 0 0 chr3 137464412 137464448 -90060130 + AT_rich Low_complexity Low_complexity 1 36 0 2603 162 2 0 chr3 137464535 137464949 -90059629 - MSTB LTR MaLR -11 415 1 21 0 0 0 chr3 137465248 137465269 -90059309 + AT_rich Low_complexity Low_complexity 1 21 0 853 187 33 11 chr3 137465625 137465807 -90058771 - L1PB4 LINE L1 -159 5997 5812 * 35624 88 9 7 chr3 137465802 137471937 -90052641 - L1PA6 LINE L1 -1 6153 11 5955 189 25 4 chr3 137472128 137472173 -90052405 - L1PB4 LINE L1 -319 5837 5794 342 0 0 0 chr3 137472173 137472211 -90052367 + (TA)n Simple_repeat Simple_repeat 2 39 0 5955 189 25 4 chr3 137472211 137474005 -90050573 - L1PB4 LINE L1 -362 5794 3956 2309 64 4 4 chr3 137474005 137474286 -90050292 - AluY SINE Alu -10 301 21 12283 68 7 0 chr3 137474896 137476519 -90048059 - HERVK9 LTR ERVK -571 5345 3711 13013 58 1 0 chr3 137476519 137478191 -90046387 - HERVK9 LTR ERVK -3130 2786 1114 4140 62 7 22 chr3 137478193 137478770 -90045808 - HERVK9 LTR ERVK -5348 568 1 3740 94 8 4 chr3 137478770 137479279 -90045299 - MER9 LTR ERVK 0 511 1 850 201 7 0 chr3 137479285 137479429 -90045149 - MER5A DNA MER1_type -13 176 32 725 199 127 6 chr3 137479467 137479633 -90044945 + MER45C DNA AcHobo 38 223 -730 360 330 34 73 chr3 137479695 137480087 -90044491 + MER45C DNA AcHobo 343 777 -176 454 176 96 7 chr3 137480294 137480430 -90044148 + MER45B DNA AcHobo 832 979 -61 293 296 0 0 chr3 137480447 137480535 -90044043 + L1ME2 LINE L1 5918 6005 -159 5001 16 0 7 chr3 137480703 137481310 -90043268 + L1HS LINE L1 5553 6155 0 256 174 22 0 chr3 137481463 137481509 -90043069 + MER45B DNA AcHobo 994 1040 0 470 286 9 0 chr3 137481574 137481686 -90042892 - L2 LINE L2 -10 3303 3191 2756 231 67 193 chr3 137481767 137482232 -90042346 + L2 LINE L2 894 1416 -1898 955 184 11 32 chr3 137482232 137482417 -90042161 - AluJo SINE Alu -16 296 116 2756 231 67 193 chr3 137482417 137484013 -90040565 + L2 LINE L2 1416 2857 -457 805 190 80 25 chr3 137484028 137484228 -90040350 - LTR40b LTR ERVL -1 461 251 1421 203 26 77 chr3 137484238 137484661 -90039917 - MLT1B LTR MaLR -2 388 1 675 284 28 31 chr3 137484661 137484915 -90039663 + L2 LINE L2 3060 3312 -1 2668 148 48 12 chr3 137485318 137485907 -90038671 + L1PA6 LINE L1 5542 6151 -3 6265 65 1 0 chr3 137486052 137486848 -90037730 + L1PA6 LINE L1 5352 6148 -6 207 204 0 0 chr3 137486872 137486916 -90037662 + (TA)n Simple_repeat Simple_repeat 1 44 0 8349 42 1 0 chr3 137487448 137488521 -90036057 - L1PA3 LINE L1 -989 5157 4084 7555 27 6 0 chr3 137488521 137489516 -90035062 + L1PA3 LINE L1 5156 6155 0 1269 168 14 5 chr3 137489675 137489884 -90034694 - AluJo SINE Alu -99 213 3 1297 285 0 22 chr3 137490070 137490273 -90034305 - PRIMA41-int LTR ERV1 -5517 2239 2048 1735 164 0 4 chr3 137490273 137490541 -90034037 - AluSx SINE Alu -8 304 38 1297 285 0 22 chr3 137490541 137490741 -90033837 - PRIMA41-int LTR ERV1 -5708 2048 1845 339 210 65 0 chr3 137490741 137490865 -90033713 - LTR5 LTR ERVK 0 969 838 2581 270 27 3 chr3 137491429 137492128 -90032450 - PRIMA41-int LTR ERV1 -2337 5419 4704 * 2742 257 17 9 chr3 137492125 137492884 -90031694 - PRIMA41-int LTR ERV1 -3154 4602 3838 588 253 24 36 chr3 137493477 137493672 -90030906 + AluJo SINE Alu 123 315 0 940 157 7 7 chr3 137493680 137493827 -90030751 + FRAM SINE Alu 8 154 -22 21 36 0 0 chr3 137493831 137493859 -90030719 + AT_rich Low_complexity Low_complexity 1 28 0 1609 167 52 11 chr3 137494006 137494293 -90030285 - AluJo SINE Alu -13 299 1 1146 158 74 39 chr3 137494406 137494737 -90029841 + L1M4b LINE L1 1318 1661 -5194 1754 119 4 14 chr3 137494737 137495014 -90029564 + AluJb SINE Alu 1 274 -38 280 322 43 0 chr3 137495294 137495409 -90029169 - L2 LINE L2 -655 2659 2540 389 165 0 5 chr3 137495440 137495519 -90029059 - AluJ/FLAM SINE Alu -238 64 1 2187 119 0 3 chr3 137495888 137496190 -90028388 + AluSx SINE Alu 1 301 -11 423 56 0 0 chr3 137496355 137496409 -90028169 + (CA)n Simple_repeat Simple_repeat 1 54 0 180 0 0 0 chr3 137496408 137496428 -90028150 + (TA)n Simple_repeat Simple_repeat 2 21 0 * 2153 133 0 0 chr3 137496428 137496721 -90027857 - AluSx SINE Alu -15 297 5 1457 195 14 42 chr3 137496754 137497041 -90027537 - AluJb SINE Alu -33 279 1 468 208 57 0 chr3 137497410 137497516 -90027062 + MIR SINE MIR 108 219 -43 621 184 9 35 chr3 137497728 137497842 -90026736 + MER81 DNA DNA 1 111 -3 1267 209 59 4 chr3 137499622 137499876 -90024702 - MLT1A1 LTR MaLR -2 363 96 829 220 36 0 chr3 137499876 137500044 -90024534 - MER41D LTR ERV1 0 557 384 2292 106 0 6 chr3 137500408 137500719 -90023859 - AluSc SINE Alu 0 309 1 411 269 58 32 chr3 137500771 137500927 -90023651 - PRIMA41-int LTR ERV1 0 5946 5787 1544 322 12 12 chr3 137501126 137501635 -90022943 - PRIMA41-int LTR ERV1 -249 6873 6365 413 19 19 0 chr3 137501636 137501690 -90022888 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 954 174 0 0 chr3 137501693 137501842 -90022736 - AluSx SINE Alu -32 280 132 688 111 0 0 chr3 137501842 137501932 -90022646 - AluSx SINE Alu -217 95 6 2149 320 26 6 chr3 137501946 137502665 -90021913 - PRIMA41-int LTR ERV1 -759 6363 5630 2791 284 7 3 chr3 137502980 137503681 -90020897 - PRIMA41-int LTR ERV1 -1534 6222 5519 1676 141 0 0 chr3 137503683 137503917 -90020661 + AluSx SINE Alu 1 234 -78 2072 128 3 7 chr3 137504161 137504457 -90020121 - AluSx SINE Alu -17 295 1 997 176 0 33 chr3 137504508 137504690 -90019888 + AluJb SINE Alu 137 312 0 1603 57 0 0 chr3 137504793 137504987 -90019591 + MER107 DNA MER1_type 4 197 0 1048 182 50 59 chr3 137506767 137506941 -90017637 + MER20 DNA MER1_type 2 175 -44 2031 78 54 34 chr3 137506941 137507236 -90017342 + AluSp SINE Alu 1 301 -12 1048 182 50 59 chr3 137507236 137507281 -90017297 + MER20 DNA MER1_type 175 219 0 240 111 0 0 chr3 137508237 137508273 -90016305 + (GAAAA)n Simple_repeat Simple_repeat 5 40 0 826 280 48 39 chr3 137509053 137509364 -90015214 + MLT1K LTR MaLR 257 570 -18 22 56 0 0 chr3 137509746 137509782 -90014796 + AT_rich Low_complexity Low_complexity 1 36 0 1197 271 63 39 chr3 137510452 137510961 -90013617 - LTR33 LTR ERVL 0 521 1 241 289 148 31 chr3 137510981 137511109 -90013469 + L2 LINE L2 3103 3245 -27 2480 83 3 0 chr3 137511113 137511415 -90013163 + AluSp SINE Alu 1 303 -10 2417 94 3 0 chr3 137511415 137511714 -90012864 + AluSp SINE Alu 1 300 -13 1589 194 60 0 chr3 137511736 137512020 -90012558 + AluJo SINE Alu 1 301 -11 298 338 13 0 chr3 137514285 137514436 -90010142 - L1ME4a LINE L1 -205 5916 5764 317 322 50 8 chr3 137514436 137514557 -90010021 + L2 LINE L2 3147 3272 0 439 269 82 7 chr3 137514932 137515119 -90009459 - MIR SINE MIR -55 207 3 432 279 93 0 chr3 137515410 137515539 -90009039 - Charlie8 DNA MER1_type -2141 276 136 817 281 0 4 chr3 137515586 137515814 -90008764 + MIR SINE MIR 35 261 -1 360 277 50 34 chr3 137515876 137515995 -90008583 - Charlie8 DNA MER1_type -2296 121 1 1810 157 0 41 chr3 137516094 137516413 -90008165 + AluJo SINE Alu 1 306 -6 445 236 53 119 chr3 137516488 137516639 -90007939 - L1MC4 LINE L1 -16 8026 7867 282 56 0 0 chr3 137516639 137516675 -90007903 + (CA)n Simple_repeat Simple_repeat 1 36 0 445 236 53 119 chr3 137516675 137516707 -90007871 - L1MC4 LINE L1 -175 7867 7834 2095 138 0 28 chr3 137516707 137517027 -90007551 + AluSx SINE Alu 1 311 -1 445 236 53 119 chr3 137517027 137517203 -90007375 - L1MC4 LINE L1 -208 7834 7690 35 0 0 0 chr3 137517203 137517238 -90007340 + AT_rich Low_complexity Low_complexity 1 35 0 1380 128 58 0 chr3 137517240 137517383 -90007195 - L1MA4 LINE L1 -6 6294 6130 2093 126 10 10 chr3 137517383 137517685 -90006893 - AluSx SINE Alu -10 302 1 1380 128 58 0 chr3 137517685 137517784 -90006794 - L1MA4 LINE L1 -170 6130 6038 2295 91 0 7 chr3 137517791 137518089 -90006489 - AluSc SINE Alu -13 296 1 2562 108 34 15 chr3 137518094 137518503 -90006075 - L1MA4A LINE L1 -4 6299 5883 267 268 21 10 chr3 137518517 137518614 -90005964 - L1MC4 LINE L1 -364 7678 7581 200 225 0 0 chr3 137518654 137518694 -90005884 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 192 189 0 0 chr3 137518730 137518767 -90005811 - MER5A DNA MER1_type -16 173 137 289 276 75 55 chr3 137518781 137518980 -90005598 + MER3 DNA MER1_type 7 209 0 * 1051 181 31 0 chr3 137518823 137519016 -90005562 - MER3 DNA MER1_type 0 209 11 547 180 9 23 chr3 137519331 137519449 -90005129 + MLT1A1 LTR MaLR 1 104 -261 1644 140 7 30 chr3 137519811 137520082 -90004496 - AluSx SINE Alu -1 311 47 634 214 65 30 chr3 137520108 137520181 -90004397 + MER41D LTR ERV1 384 453 -104 1962 106 64 7 chr3 137520181 137520464 -90004114 - AluSc SINE Alu -9 300 2 634 214 65 30 chr3 137520464 137520558 -90004020 + MER41D LTR ERV1 453 557 0 344 209 45 64 chr3 137520558 137520668 -90003910 + MER41D-int LTR ERV1 1 108 -5838 359 274 104 0 chr3 137520736 137520842 -90003736 + MER41D-int LTR ERV1 272 388 -5558 2375 97 0 13 chr3 137520938 137521109 -90003469 - AluSx SINE Alu -8 304 137 2309 108 0 13 chr3 137521109 137521415 -90003163 - AluSc SINE Alu -7 302 1 2375 97 0 13 chr3 137521415 137521551 -90003027 - AluSx SINE Alu -175 137 1 1507 304 63 66 chr3 137521802 137522312 -90002266 + MER41D-int LTR ERV1 658 1168 -6588 2457 63 0 3 chr3 137522312 137522614 -90001964 - AluY SINE Alu -10 301 1 1507 304 63 66 chr3 137522614 137523299 -90001279 + MER41D-int LTR ERV1 1168 1850 -5906 3211 203 39 70 chr3 137523299 137524283 -90000295 + LTR5 LTR ERVK 1 953 -16 21 71 0 0 chr3 137524803 137524845 -89999733 + AT_rich Low_complexity Low_complexity 1 42 0 2286 115 0 0 chr3 137524880 137525175 -89999403 - AluSx SINE Alu -17 295 1 2407 90 3 7 chr3 137525471 137525781 -89998797 + AluSp SINE Alu 5 313 0 212 311 0 0 chr3 137525848 137525893 -89998685 - L2 LINE L2 -23 3249 3205 1079 186 50 115 chr3 137526193 137526343 -89998235 + AluJo SINE Alu 2 121 -181 200 35 35 0 chr3 137526343 137526372 -89998206 + (TAAAA)n Simple_repeat Simple_repeat 2 31 0 1079 186 50 115 chr3 137526372 137526543 -89998035 + AluJo SINE Alu 121 302 0 1594 167 52 11 chr3 137526706 137526993 -89997585 - AluJo SINE Alu -13 299 1 931 209 65 53 chr3 137527106 137527446 -89997132 + L1M4b LINE L1 1318 1661 -5198 833 177 21 42 chr3 137527636 137527828 -89996750 + LTR5 LTR ERVK 782 969 0 4095 284 23 24 chr3 137527828 137528028 -89996550 + MER41D-int LTR ERV1 1845 2044 -5712 1731 164 0 4 chr3 137528028 137528296 -89996282 + AluSx SINE Alu 38 304 -8 4095 284 23 24 chr3 137528296 137529331 -89995247 + MER41D-int LTR ERV1 2044 3078 -4678 1276 290 9 0 chr3 137529335 137529683 -89994895 + MER41D-int LTR ERV1 3491 3841 -3915 24 0 0 0 chr3 137529683 137529707 -89994871 + AT_rich Low_complexity Low_complexity 1 24 0 3064 243 22 18 chr3 137529752 137530526 -89994052 + MER41D-int LTR ERV1 3826 4602 -3154 1782 267 35 2 chr3 137530523 137530958 -89993620 + MER41D-int LTR ERV1 4704 5152 -2604 * 1397 231 84 64 chr3 137531766 137532263 -89992315 + MLT1J LTR MaLR 5 511 0 2808 199 59 5 chr3 137532300 137532897 -89991681 + MER82 DNA MER2_type 23 651 -2 234 0 0 0 chr3 137533661 137533687 -89990891 + (TA)n Simple_repeat Simple_repeat 2 27 0 2581 52 0 3 chr3 137533696 137534001 -89990577 + AluY SINE Alu 2 305 -6 2120 106 0 0 chr3 137534555 137534828 -89989750 + AluSx SINE Alu 1 273 -39 762 236 68 0 chr3 137534942 137535090 -89989488 - MER58A DNA MER1_type 0 158 1 21 0 0 0 chr3 137535260 137535281 -89989297 + AT_rich Low_complexity Low_complexity 1 21 0 770 182 290 0 chr3 137535386 137535562 -89989016 + Tigger7 DNA MER2_type 2 228 -2259 654 143 71 0 chr3 137535577 137535675 -89988903 + Tigger7 DNA MER2_type 2382 2486 -1 576 200 10 0 chr3 137535739 137535839 -89988739 + Tigger7 DNA MER2_type 2386 2486 -1 2183 101 0 4 chr3 137535896 137536172 -89988406 - AluSx SINE Alu -37 275 1 2896 7 0 3 chr3 137536586 137536896 -89987682 - AluYb8 SINE Alu -9 309 1 783 180 150 0 chr3 137537157 137537357 -89987221 + L1ME3A LINE L1 5707 5936 -234 808 149 95 0 chr3 137537358 137537526 -89987052 + L1ME3A LINE L1 5987 6170 0 217 157 59 20 chr3 137537996 137538047 -89986531 + MIR SINE MIR 89 141 -67 245 205 0 0 chr3 137539256 137539295 -89985283 + AluJ/monomer SINE Alu 3 41 -259 2101 111 57 0 chr3 137540332 137540612 -89983966 - AluSx SINE Alu -16 296 1 231 264 0 19 chr3 137540842 137540895 -89983683 + L1MDb LINE L1 6 57 -6352 623 108 75 0 chr3 137540900 137540993 -89983585 + MER46A DNA MER2_type 2 101 -135 2806 201 68 31 chr3 137541144 137541855 -89982723 - L1MD2 LINE L1 -33 6326 5590 1767 181 3 10 chr3 137542237 137542535 -89982043 - AluJo SINE Alu -16 296 1 2410 84 0 3 chr3 137543847 137544143 -89980435 - AluSg SINE Alu -15 295 1 1062 191 53 16 chr3 137544343 137544589 -89979989 - L1MD3 LINE L1 -5 7990 7736 1716 105 5 0 chr3 137544590 137544833 -89979745 - AluSx SINE Alu 0 306 63 2962 212 45 19 chr3 137544834 137544958 -89979620 - L1MD2 LINE L1 -816 5330 5211 2135 118 13 13 chr3 137544958 137545263 -89979315 - AluSx SINE Alu -7 305 1 2962 212 45 19 chr3 137545263 137545915 -89978663 - L1MD2 LINE L1 -935 5211 4534 2283 100 0 16 chr3 137545915 137546225 -89978353 + AluSq SINE Alu 1 305 -8 21 0 0 0 chr3 137546229 137546250 -89978328 + AT_rich Low_complexity Low_complexity 1 21 0 494 105 0 13 chr3 137546254 137546330 -89978248 + AluSg SINE Alu 2 76 -233 2201 107 0 13 chr3 137546331 137546640 -89977938 + AluSq SINE Alu 1 305 -8 1567 98 0 86 chr3 137546646 137546891 -89977687 + AluSg SINE Alu 66 289 -21 1106 184 0 0 chr3 137546894 137547106 -89977472 + AluJb SINE Alu 138 349 0 755 231 71 0 chr3 137547108 137547369 -89977209 + MLT1E1 LTR MaLR 1 256 -398 606 137 145 34 chr3 137547851 137547968 -89976610 + MER58B DNA MER1_type 212 341 0 243 214 31 31 chr3 137548668 137548766 -89975812 - L1MC5 LINE L1 -37 7924 7827 517 290 24 6 chr3 137549335 137549504 -89975074 + L1PBb LINE L1 777 948 -5256 607 124 7 0 chr3 137549533 137549667 -89974911 - L1PA15-16 LINE L1 -6636 213 1 1329 224 47 28 chr3 137549714 137550175 -89974403 + L1PBb LINE L1 1954 2421 -3782 * 4477 180 17 9 chr3 137550171 137551136 -89973442 + L1 LINE L1 3905 4876 -1327 234 156 0 0 chr3 137551191 137551236 -89973342 + A-rich Low_complexity Low_complexity 2 46 0 298 176 0 0 chr3 137551236 137551287 -89973291 - MER57A LTR ERV1 -52 351 301 396 175 75 0 chr3 137551427 137551507 -89973071 - LTR54 LTR ERV1 -424 86 1 643 123 0 26 chr3 137551507 137551621 -89972957 + L1MC3 LINE L1 7506 7616 -169 403 227 157 91 chr3 137551674 137551703 -89972875 - MER63B DNA MER1_type -850 212 186 300 27 0 0 chr3 137551703 137551740 -89972838 + (TG)n Simple_repeat Simple_repeat 2 38 0 403 227 157 91 chr3 137551740 137551908 -89972670 - MER63B DNA MER1_type -876 186 2 300 167 0 0 chr3 137551908 137551960 -89972618 + Charlie1 DNA MER1_type 2668 2719 -42 397 282 92 6 chr3 137552133 137552296 -89972282 - MIR SINE MIR 0 262 86 272 271 181 8 chr3 137552566 137552699 -89971879 - L2 LINE L2 0 3313 3158 234 200 0 20 chr3 137554075 137554125 -89970453 + L2 LINE L2 3262 3310 -3 301 254 244 0 chr3 137556872 137557002 -89967576 - MIR SINE MIR -61 147 23 22 0 0 0 chr3 137557090 137557112 -89967466 + AT_rich Low_complexity Low_complexity 1 22 0 697 316 148 25 chr3 137557120 137557569 -89967009 + L2 LINE L2 2776 3278 -35 505 346 28 91 chr3 137558255 137558619 -89965959 - L2 LINE L2 -1 3271 2931 1919 266 52 42 chr3 137559857 137561057 -89963521 + L1ME LINE L1 168 1447 -4814 1676 132 19 8 chr3 137561057 137561322 -89963256 + AluSp SINE Alu 1 268 -45 201 233 0 0 chr3 137562999 137563042 -89961536 + (TG)n Simple_repeat Simple_repeat 1 43 0 2136 127 0 10 chr3 137563433 137563741 -89960837 - AluSg SINE Alu -5 305 1 202 296 173 0 chr3 137563772 137563853 -89960725 - MIR SINE MIR -148 114 20 195 238 218 30 chr3 137564136 137564237 -89960341 - L3 LINE CR1 -8 1569 1450 625 261 105 20 chr3 137564283 137564578 -89960000 - MLT1I LTR MaLR -8 401 82 221 322 43 61 chr3 137565039 137565154 -89959424 + L2 LINE L2 3122 3234 -38 410 335 5 16 chr3 137567613 137567798 -89956780 - MIR SINE MIR -60 202 20 2238 97 37 0 chr3 137568180 137568479 -89956099 + AluSg SINE Alu 1 310 0 604 335 29 0 chr3 137568541 137568750 -89955828 - MIR SINE MIR -21 241 27 201 147 0 0 chr3 137569442 137569476 -89955102 + (TC)n Simple_repeat Simple_repeat 2 35 0 906 146 23 0 chr3 137569759 137569889 -89954689 - AluSq/x SINE Alu -179 133 1 2153 117 3 0 chr3 137569962 137570260 -89954318 - AluSx SINE Alu -13 299 1 222 292 123 0 chr3 137570455 137570520 -89954058 + MIR SINE MIR 34 106 -156 229 228 53 0 chr3 137570581 137570638 -89953940 + MIR SINE MIR 182 241 -21 657 350 96 33 chr3 137570717 137570966 -89953612 + L2 LINE L2 2420 2652 -662 1612 110 48 100 chr3 137570966 137571275 -89953303 - AluSq SINE Alu -20 293 1 657 350 96 33 chr3 137571275 137571537 -89953041 + L2 LINE L2 2652 2963 -351 801 235 6 0 chr3 137571543 137571713 -89952865 - AluSg/x SINE Alu -2 310 140 1910 104 21 92 chr3 137571800 137572136 -89952442 - AluYb8 SINE Alu -6 312 1 798 168 197 14 chr3 137572137 137572199 -89952379 + AluJo SINE Alu 54 103 -209 216 0 0 0 chr3 137572199 137572223 -89952355 + (TAA)n Simple_repeat Simple_repeat 3 26 0 798 168 197 14 chr3 137572223 137572368 -89952210 + AluJo SINE Alu 103 299 -13 1758 158 6 79 chr3 137572522 137572851 -89951727 - AluJb SINE Alu -7 305 1 1081 174 36 0 chr3 137572851 137573046 -89951532 + MLT1A1 LTR MaLR 164 365 0 195 129 0 0 chr3 137573133 137573164 -89951414 + (A)n Simple_repeat Simple_repeat 1 31 0 711 146 40 46 chr3 137574050 137574201 -89950377 - MER1B DNA MER1_type 0 339 190 1365 230 63 8 chr3 137574329 137574724 -89949854 + L1ME2 LINE L1 5700 6116 -48 2164 104 0 23 chr3 137574757 137575056 -89949522 + AluSx SINE Alu 3 294 -18 333 313 180 5 chr3 137575302 137575360 -89949218 + MIR SINE MIR 8 55 -207 1730 115 35 72 chr3 137575360 137575735 -89948843 - MER46B DNA MER2_type 0 236 1 333 313 180 5 chr3 137575735 137575893 -89948685 + MIR SINE MIR 55 262 0 846 165 120 67 chr3 137576238 137576356 -89948222 + MER5C DNA MER1_type 1 111 -213 1933 161 9 22 chr3 137576356 137576679 -89947899 - 7SLRNA srpRNA srpRNA -1 319 1 846 165 120 67 chr3 137576679 137576827 -89947751 + MER5C DNA MER1_type 111 281 -43 251 316 0 6 chr3 137577338 137577437 -89947141 - MIR SINE MIR -72 136 39 198 0 0 0 chr3 137577845 137577867 -89946711 + (T)n Simple_repeat Simple_repeat 1 22 0 761 86 19 0 chr3 137577867 137577972 -89946606 - U4 snRNA snRNA -26 119 13 207 0 0 0 chr3 137578061 137578084 -89946494 + (T)n Simple_repeat Simple_repeat 1 23 0 645 124 0 54 chr3 137578207 137578379 -89946199 - AluSg/x SINE Alu 0 325 161 2525 163 49 12 chr3 137578532 137578820 -89945758 - L1 LINE L1 -965 5181 4905 2353 109 19 24 chr3 137578820 137579196 -89945382 - THE1C LTR MaLR -1 374 1 2525 163 49 12 chr3 137579196 137579477 -89945101 - L1 LINE L1 -1241 4905 4591 356 332 74 38 chr3 137579687 137580062 -89944516 - L1 LINE L1 -2910 3236 2842 209 57 29 0 chr3 137580456 137580491 -89944087 + (TTA)n Simple_repeat Simple_repeat 2 37 0 269 273 78 23 chr3 137580926 137581054 -89943524 - L1MA4 LINE L1 -5 6295 6161 189 0 0 0 chr3 137581345 137581366 -89943212 + (T)n Simple_repeat Simple_repeat 1 21 0 1005 193 17 21 chr3 137581376 137581609 -89942969 - LTR53 LTR ERVL -93 426 195 238 296 102 9 chr3 137582169 137582277 -89942301 + MIR3 SINE MIR 81 198 -10 344 333 0 0 chr3 137584230 137584317 -89940261 - L2 LINE L2 -5 3267 3181 275 299 103 8 chr3 137584571 137584688 -89939890 + MIR SINE MIR 54 181 -81 2302 101 0 3 chr3 137584976 137585283 -89939295 - AluSc SINE Alu -3 306 1 5234 119 28 26 chr3 137587406 137588353 -89936225 + L1PA16 LINE L1 4874 5827 -339 1856 140 0 0 chr3 137588353 137588618 -89935960 + AluSx SINE Alu 39 303 -9 5234 119 28 26 chr3 137588618 137588946 -89935632 + L1PA16 LINE L1 5827 6153 -13 278 345 47 18 chr3 137589355 137589526 -89935052 - L2 LINE L2 -837 2477 2302 1132 148 81 158 chr3 137589687 137590118 -89934460 - MLT2D LTR ERVL -14 400 3 1894 138 133 21 chr3 137590358 137590743 -89933835 - MSTA LTR MaLR 0 428 1 2394 63 0 10 chr3 137591712 137592014 -89932564 + AluY SINE Alu 1 299 -12 201 241 17 35 chr3 137592208 137592266 -89932312 - MIR SINE MIR 0 262 206 2376 86 0 3 chr3 137594178 137594481 -89930097 - AluY SINE Alu -9 302 1 464 207 118 0 chr3 137594483 137594618 -89929960 - L1M4 LINE L1 -1819 4327 4177 1806 162 3 3 chr3 137594751 137595066 -89929512 + L1MA6 LINE L1 5986 6300 0 2433 93 0 3 chr3 137596279 137596590 -89927988 - AluSq SINE Alu -3 310 1 472 325 19 6 chr3 137596733 137596890 -89927688 + MIR SINE MIR 32 190 -72 21 0 0 0 chr3 137597078 137597099 -89927479 + AT_rich Low_complexity Low_complexity 1 21 0 10257 98 6 3 chr3 137598027 137599484 -89925094 - THE1B-int LTR MaLR -119 1461 1 2284 118 19 25 chr3 137599484 137599850 -89924728 - THE1B LTR MaLR 0 364 1 1937 65 4 0 chr3 137599850 137600110 -89924468 - THE1B-int LTR MaLR 0 1580 1320 288 0 0 0 chr3 137600409 137600441 -89924137 + (CA)n Simple_repeat Simple_repeat 2 33 0 273 29 0 0 chr3 137600440 137600474 -89924104 + (TC)n Simple_repeat Simple_repeat 2 35 0 * 228 57 0 0 chr3 137601299 137601334 -89923244 - L1PA16 LINE L1 -33 6133 6099 6246 95 11 1 chr3 137601337 137602830 -89921748 - L1PA16 LINE L1 -107 6059 4554 756 222 10 61 chr3 137602904 137603180 -89921398 - L1MC5 LINE L1 -989 6825 6554 302 95 0 0 chr3 137603350 137603392 -89921186 - 5S rRNA rRNA -79 42 1 23 0 0 0 chr3 137603420 137603443 -89921135 + AT_rich Low_complexity Low_complexity 1 23 0 954 307 113 51 chr3 137603461 137604148 -89920430 - HAL1b LINE L1 -524 824 95 966 193 41 5 chr3 137604230 137604448 -89920130 - L1MD3 LINE L1 -39 7956 7731 29 28 0 0 chr3 137604790 137604826 -89919752 + AT_rich Low_complexity Low_complexity 1 36 0 391 229 131 33 chr3 137605073 137605226 -89919352 - MIR SINE MIR -17 245 78 1945 134 6 47 chr3 137605244 137605565 -89919013 + AluJo SINE Alu 1 308 -4 380 240 117 67 chr3 137605773 137605952 -89918626 + MIR3 SINE MIR 4 191 -17 303 330 0 0 chr3 137606189 137606280 -89918298 + L1MC4 LINE L1 6613 6703 -1339 198 270 0 0 chr3 137606280 137606343 -89918235 + (TA)n Simple_repeat Simple_repeat 1 63 0 315 315 0 0 chr3 137606347 137606436 -89918142 + L1MC4 LINE L1 6615 6703 -1339 2116 94 17 7 chr3 137607344 137607632 -89916946 - AluSq SINE Alu -22 291 1 475 211 35 9 chr3 137607632 137607746 -89916832 - MIR SINE MIR -67 195 79 266 322 99 8 chr3 137608643 137608764 -89915814 + MIR3 SINE MIR 54 185 -23 280 250 29 0 chr3 137609835 137609903 -89914675 - L2 LINE L2 -16 3256 3187 564 313 92 72 chr3 137609985 137610527 -89914051 - L2 LINE L2 -1 3271 2726 526 327 60 50 chr3 137611150 137611406 -89913172 - MER41D-int LTR ERV1 -6324 1432 1180 2381 70 0 3 chr3 137611406 137611708 -89912870 + AluY SINE Alu 1 301 -10 526 327 60 50 chr3 137611708 137612218 -89912360 - MER41D-int LTR ERV1 -6576 1180 658 2363 97 0 13 chr3 137612469 137612605 -89911973 + AluSx SINE Alu 1 137 -175 2306 108 0 13 chr3 137612605 137612911 -89911667 + AluSc SINE Alu 1 302 -7 2363 97 0 13 chr3 137612911 137613082 -89911496 + AluSx SINE Alu 137 304 -8 314 274 104 0 chr3 137613178 137613284 -89911294 - MER41D-int LTR ERV1 -5558 388 272 301 209 45 64 chr3 137613353 137613463 -89911115 - MER41D-int LTR ERV1 -5838 108 1 362 203 13 0 chr3 137613463 137613542 -89911036 - MER41D LTR ERV1 0 557 478 321 139 0 56 chr3 137613557 137613629 -89910949 + AluS SINE Alu 2 69 -234 184 211 0 0 chr3 137614028 137614066 -89910512 + A-rich Low_complexity Low_complexity 1 38 0 1670 176 0 50 chr3 137614334 137614652 -89909926 - AluJo SINE Alu -10 302 1 2239 99 0 50 chr3 137614737 137615060 -89909518 - AluSc SINE Alu -2 307 1 333 290 70 50 chr3 137615081 137615237 -89909341 - L1MEc LINE L1 -4734 1662 1511 2209 123 10 0 chr3 137615237 137615546 -89909032 - AluSx SINE Alu 0 312 1 333 290 70 50 chr3 137615546 137615841 -89908737 - L1MEc LINE L1 -4885 1511 1200 750 128 0 0 chr3 137615850 137615959 -89908619 - AluSg/x SINE Alu -15 297 189 1621 273 48 35 chr3 137615984 137616692 -89907886 - L1MEc LINE L1 -5651 745 29 380 233 8 58 chr3 137617123 137617243 -89907335 - AluJo SINE Alu -77 225 123 522 274 0 0 chr3 137617256 137617435 -89907143 + (TA)n Simple_repeat Simple_repeat 2 180 0 242 203 0 29 chr3 137617463 137617532 -89907046 + (CATATA)n Simple_repeat Simple_repeat 6 72 0 2674 206 35 5 chr3 137617536 137617865 -89906713 - L1 LINE L1 -2202 3944 3626 237 33 0 0 chr3 137617865 137617895 -89906683 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2674 206 35 5 chr3 137617895 137618195 -89906383 - L1 LINE L1 -2520 3626 3296 1208 197 102 7 chr3 137618197 137618360 -89906218 - AluJo SINE Alu -1 311 165 207 0 0 0 chr3 137618360 137618383 -89906195 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1208 197 102 7 chr3 137618383 137618493 -89906085 - AluJo SINE Alu -147 165 12 3966 187 35 4 chr3 137618496 137619432 -89905146 - L1 LINE L1 -2853 3293 2329 1397 173 22 18 chr3 137619432 137619710 -89904868 + MLT1A1 LTR MaLR 87 365 0 2216 214 73 33 chr3 137619710 137620922 -89903656 - L1ME2 LINE L1 -149 6015 4757 237 286 88 11 chr3 137621571 137621662 -89902916 + MIR SINE MIR 116 213 -49 1098 158 0 0 chr3 137623807 137624009 -89900569 + L1MA7 LINE L1 6088 6289 -2 449 339 100 51 chr3 137624087 137624912 -89899666 + L1ME LINE L1 3761 4647 -1499 1840 133 71 17 chr3 137624912 137625206 -89899372 + AluSx SINE Alu 3 312 0 449 339 100 51 chr3 137625206 137625398 -89899180 + L1ME LINE L1 4647 4828 -1318 392 279 101 34 chr3 137625783 137625991 -89898587 + L1ME LINE L1 5256 5477 -2331 483 282 32 19 chr3 137626053 137626269 -89898309 + L1ME LINE L1 5549 5767 -354 213 39 0 0 chr3 137626271 137626297 -89898281 + (TA)n Simple_repeat Simple_repeat 2 27 0 259 287 0 0 chr3 137626308 137626395 -89898183 - L1MC4 LINE L1 -1335 6707 6621 397 184 74 49 chr3 137628084 137628247 -89896331 - Charlie7 DNA MER1_type 0 2612 2446 369 289 50 6 chr3 137628865 137629045 -89895533 - L1MC4 LINE L1 -1923 5885 5698 305 269 0 43 chr3 137629066 137629159 -89895419 - L1MC4 LINE L1 -1340 6702 6614 342 304 0 0 chr3 137629161 137629253 -89895325 + L1MC4 LINE L1 6614 6705 -1337 2086 217 75 83 chr3 137629442 137630591 -89893987 + L1M4 LINE L1 2647 3786 -2360 359 184 40 26 chr3 137630591 137630667 -89893911 + Tigger2 DNA MER2_type 1 77 -2641 1439 172 18 78 chr3 137630667 137630999 -89893579 + AluJb SINE Alu 1 312 0 1764 132 7 51 chr3 137630999 137631294 -89893284 + AluSx SINE Alu 1 282 -30 219 36 0 0 chr3 137631300 137631328 -89893250 + (TAA)n Simple_repeat Simple_repeat 3 30 0 681 218 82 0 chr3 137631330 137631536 -89893042 - L1 LINE L1 -1611 4535 4313 181 222 63 16 chr3 137632250 137632313 -89892265 + MIR SINE MIR 77 142 -120 378 212 200 18 chr3 137632590 137632755 -89891823 + L1MDa LINE L1 1874 2068 -4472 1532 180 97 8 chr3 137632982 137633344 -89891234 - L1 LINE L1 -1053 5093 4700 2466 74 3 6 chr3 137633349 137633660 -89890918 - AluSx SINE Alu -1 311 2 1387 203 36 23 chr3 137633722 137634023 -89890555 + AluJb SINE Alu 1 305 -7 228 194 31 102 chr3 137634058 137634156 -89890422 + GA-rich Low_complexity Low_complexity 5 95 0 22 35 0 0 chr3 137634721 137634750 -89889828 + AT_rich Low_complexity Low_complexity 1 29 0 219 36 0 0 chr3 137636727 137636755 -89887823 + (CCCCAG)n Simple_repeat Simple_repeat 5 32 0 203 267 0 0 chr3 137637036 137637081 -89887497 + (TTCGGG)n Simple_repeat Simple_repeat 3 47 0 524 250 9 0 chr3 137637475 137637587 -89886991 + MER81 DNA DNA 1 113 -1 2298 93 0 27 chr3 137637810 137638111 -89886467 - AluSg SINE Alu -17 293 1 1824 161 10 23 chr3 137638119 137638424 -89886154 - AluJo SINE Alu -6 306 6 1404 181 13 0 chr3 137639182 137639420 -89885158 - AluJb SINE Alu -71 241 1 688 82 41 0 chr3 137639670 137639792 -89884786 + CT-rich Low_complexity Low_complexity 1 127 0 1674 167 8 0 chr3 137639792 137640056 -89884522 - AluSx SINE Alu -38 274 9 1119 219 116 19 chr3 137641154 137641578 -89883000 + L1MD2 LINE L1 1002 1466 -5074 * 3273 210 63 6 chr3 137641556 137642568 -89882010 + L1MD2 LINE L1 5517 6750 -3 269 103 0 0 chr3 137643317 137643365 -89881213 - Alu SINE Alu -7 295 253 217 186 0 0 chr3 137643365 137643408 -89881170 + MIR SINE MIR 126 168 -94 432 248 94 0 chr3 137643575 137643692 -89880886 + LTR30-int LTR ERV1 5630 5757 -1365 828 223 38 0 chr3 137646949 137647133 -89877445 - MER20 DNA MER1_type -1 218 28 972 260 41 8 chr3 137647670 137647912 -89876666 - MIR SINE MIR 0 262 13 598 300 6 18 chr3 137648190 137648360 -89876218 + MER5A DNA MER1_type 1 168 -21 1791 143 11 21 chr3 137649865 137650145 -89874433 + AluJo SINE Alu 6 282 -30 354 296 0 0 chr3 137650697 137650778 -89873800 + L3 LINE CR1 1496 1576 -1 315 253 65 91 chr3 137651737 137651891 -89872687 + L3 LINE CR1 1233 1382 -195 2006 124 7 7 chr3 137652183 137652473 -89872105 + LTR2B LTR ERV1 201 490 0 446 102 0 0 chr3 137652474 137652533 -89872045 + Alu SINE Alu 238 296 -15 276 326 12 0 chr3 137652554 137652640 -89871938 - L1MEd LINE L1 -5489 630 544 228 265 73 0 chr3 137652726 137652794 -89871784 - L1MEd LINE L1 -5725 394 322 2319 96 0 3 chr3 137652794 137653095 -89871483 - AluSx SINE Alu -12 300 1 2239 105 0 10 chr3 137653260 137653565 -89871013 - AluSx SINE Alu -10 302 1 207 0 0 0 chr3 137653986 137654009 -89870569 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 203 136 45 0 chr3 137654316 137654360 -89870218 + (TAGA)n Simple_repeat Simple_repeat 2 47 0 905 176 32 56 chr3 137654964 137655180 -89869398 + AluSx SINE Alu 11 221 -91 824 220 36 0 chr3 137655743 137655911 -89868667 + MER41D LTR ERV1 384 557 0 1270 209 59 4 chr3 137655911 137656165 -89868413 + MLT1A1 LTR MaLR 96 363 -2 667 184 9 35 chr3 137657938 137658052 -89866526 - MER81 DNA DNA -3 111 1 1539 321 14 12 chr3 137658445 137658953 -89865625 + LTR30-int LTR ERV1 6365 6873 -249 405 269 58 32 chr3 137659152 137659308 -89865270 + LTR30-int LTR ERV1 5787 5946 0 * 438 269 15 22 chr3 137659183 137659317 -89865261 + HERVK14 LTR ERVK 5636 5768 -177 2233 106 0 7 chr3 137659360 137659663 -89864915 + AluSc SINE Alu 1 301 -8 1612 232 139 69 chr3 137659671 137660392 -89864186 + HAL1 LINE L1 1632 2402 -105 21 36 0 0 chr3 137660395 137660423 -89864155 + AT_rich Low_complexity Low_complexity 1 28 0 1807 159 7 3 chr3 137660570 137660859 -89863719 - AluJo SINE Alu -13 299 10 1928 147 133 6 chr3 137660859 137661204 -89863374 - MSTA LTR MaLR -35 393 1 23 40 0 0 chr3 137661232 137661257 -89863321 + AT_rich Low_complexity Low_complexity 1 25 0 510 83 119 12 chr3 137663650 137663734 -89860844 + LTR12 LTR ERV1 614 706 -8 388 250 50 0 chr3 137663786 137663886 -89860692 + MIR SINE MIR 87 191 -71 216 0 0 0 chr3 137663909 137663933 -89860645 + (CA)n Simple_repeat Simple_repeat 1 24 0 552 221 61 8 chr3 137663934 137664065 -89860513 + MIR SINE MIR 89 226 -36 271 211 0 0 chr3 137664065 137664117 -89860461 + LTR30 LTR ERV1 1 52 -670 1630 60 286 190 chr3 137664117 137664596 -89859982 + LTR12 LTR ERV1 53 577 -137 2323 100 0 22 chr3 137667205 137667516 -89857062 + AluSq SINE Alu 1 304 -9 242 188 47 47 chr3 137667925 137667989 -89856589 - L2 LINE L2 0 3313 3250 237 300 14 0 chr3 137670696 137670766 -89853812 + MIR SINE MIR 21 91 -117 675 303 123 102 chr3 137670973 137671222 -89853356 + L2 LINE L2 1777 2019 -1295 227 266 0 0 chr3 137671222 137671286 -89853292 - L1MC4 LINE L1 -1339 6703 6640 675 303 123 102 chr3 137671286 137672036 -89852542 + L2 LINE L2 2019 2861 -453 225 293 42 108 chr3 137672536 137672748 -89851830 - MIR SINE MIR -52 210 13 546 180 9 23 chr3 137673121 137673239 -89851339 + MLT1A1 LTR MaLR 1 104 -261 1631 140 7 30 chr3 137673601 137673872 -89850706 - AluSx SINE Alu -1 311 47 338 211 56 0 chr3 137673898 137673969 -89850609 + MER41D LTR ERV1 384 458 -99 2232 103 0 0 chr3 137673971 137674261 -89850317 - AluSx SINE Alu -9 303 14 187 253 110 55 chr3 137674552 137674593 -89849985 - MIR SINE MIR -116 146 109 1548 208 21 58 chr3 137674593 137674972 -89849606 - MLT1A1 LTR MaLR 0 365 1 187 253 110 55 chr3 137674972 137675021 -89849557 - MIR SINE MIR -153 109 51 19869 95 13 5 chr3 137675193 137678058 -89846520 + L1P LINE L1 172 3060 -3086 489 186 107 0 chr3 137679716 137679930 -89844648 + L1MA4A LINE L1 5981 6278 -25 225 310 19 82 chr3 137680535 137680693 -89843885 - L2 LINE L2 -558 2756 2609 22 0 0 0 chr3 137681502 137681524 -89843054 + AT_rich Low_complexity Low_complexity 1 22 0 1560 165 66 11 chr3 137684288 137684560 -89840018 - AluJo SINE Alu -24 288 2 2165 138 0 3 chr3 137685176 137685488 -89839090 - AluSx SINE Alu -1 311 1 1940 154 80 33 chr3 137685609 137685999 -89838579 - MSTC LTR MaLR -19 409 2 4617 239 64 50 chr3 137686000 137687578 -89837000 - MSTC-int LTR MaLR 0 1651 2 1985 213 53 12 chr3 137688055 137688618 -89835960 - L1 LINE L1 -2696 3450 2865 375 368 71 16 chr3 137688809 137689132 -89835446 - L1M4 LINE L1 -1005 5141 4801 258 353 43 9 chr3 137689503 137689619 -89834959 - MIR3 SINE MIR -80 128 9 214 277 0 0 chr3 137689864 137689911 -89834667 + (CATATA)n Simple_repeat Simple_repeat 4 50 0 973 311 135 43 chr3 137691101 137692221 -89832357 + L2 LINE L2 2027 3272 0 382 270 9 27 chr3 137692412 137692523 -89832055 + MER5C DNA MER1_type 1 109 -215 276 333 29 14 chr3 137692724 137692862 -89831716 - L1ME3A LINE L1 -11 6159 6020 475 299 114 29 chr3 137692948 137693302 -89831276 - L1ME3A LINE L1 -322 5848 5525 5161 76 8 12 chr3 137693302 137693971 -89830607 - L1PA10 LINE L1 -4 6164 5499 475 299 114 29 chr3 137693971 137694266 -89830312 - L1ME3A LINE L1 -645 5525 5144 687 253 5 69 chr3 137694394 137694596 -89829982 + AluJb SINE Alu 121 309 -3 35 0 0 56 chr3 137694596 137694650 -89829928 + AT_rich Low_complexity Low_complexity 1 51 0 59 0 0 0 chr3 137694694 137694753 -89829825 + AT_rich Low_complexity Low_complexity 1 59 0 22 0 0 0 chr3 137694760 137694782 -89829796 + AT_rich Low_complexity Low_complexity 1 22 0 1866 143 21 14 chr3 137695065 137695352 -89829226 - AluJb SINE Alu -23 289 1 764 307 137 25 chr3 137696800 137697165 -89827413 + MLT1K LTR MaLR 17 422 -166 968 237 19 19 chr3 137697218 137697429 -89827149 + MER45B DNA AcHobo 3 213 -827 15672 73 15 1 chr3 137697564 137699745 -89824833 - L1P2 LINE L1 -674 5481 3272 10957 37 4 88 chr3 137700194 137701705 -89822873 + SVA Other Other 1 1384 -2 523 156 0 0 chr3 137701879 137701956 -89822622 + FRAM/FAM SINE Alu 1 76 -100 1691 199 149 6 chr3 137702491 137703204 -89821374 - L1ME2 LINE L1 -291 5873 5053 279 291 39 19 chr3 137703204 137703307 -89821271 - MIR SINE MIR -63 145 41 494 288 50 90 chr3 137703725 137703766 -89820812 - L2 LINE L2 -407 2907 2866 1978 139 27 33 chr3 137703766 137704132 -89820446 + THE1B LTR MaLR 1 364 0 494 288 50 90 chr3 137704132 137704489 -89820089 - L2 LINE L2 -448 2866 2525 1875 171 0 13 chr3 137704664 137704963 -89819615 - AluJo SINE Alu -17 295 1 204 163 0 0 chr3 137705355 137705398 -89819180 + CT-rich Low_complexity Low_complexity 2 44 0 232 312 78 0 chr3 137705666 137705743 -89818835 + L2 LINE L2 3191 3273 -40 488 284 56 19 chr3 137705934 137706096 -89818482 - MIR SINE MIR -48 214 47 304 329 148 0 chr3 137706717 137706872 -89817706 - MIR SINE MIR -6 256 79 585 0 0 0 chr3 137706892 137706957 -89817621 + (GA)n Simple_repeat Simple_repeat 1 65 0 5663 205 120 66 chr3 137707334 137709137 -89815441 + L1MC3 LINE L1 5184 7212 -573 441 159 34 11 chr3 137709137 137709225 -89815353 + MLT1F1 LTR MaLR 35 124 -443 5663 205 120 66 chr3 137709225 137709563 -89815015 + L1MC3 LINE L1 7212 7531 -254 879 100 8 0 chr3 137709564 137709684 -89814894 + AluSq/x SINE Alu 1 121 -191 548 37 0 37 chr3 137709798 137709879 -89814699 + L1PA5 LINE L1 6077 6154 0 2257 83 0 0 chr3 137710589 137710898 -89813680 + AluSc SINE Alu 3 311 0 296 262 117 24 chr3 137710968 137711174 -89813404 + HAL1 LINE L1 2270 2494 -13 963 225 155 3 chr3 137711629 137712003 -89812575 - Charlie5 DNA MER1_type -2175 437 7 931 122 7 0 chr3 137713358 137713505 -89811073 + L1 LINE L1 4030 4177 -1969 342 186 12 0 chr3 137713505 137713591 -89810987 + L1MA4 LINE L1 6208 6294 -6 2329 71 7 3 chr3 137713597 137713891 -89810687 - AluY SINE Alu -16 295 1 451 317 104 31 chr3 137714373 137714660 -89809918 - HAL1 LINE L1 -935 1572 1265 357 244 17 8 chr3 137714661 137714780 -89809798 - L1MEd LINE L1 -5059 1060 941 439 302 101 73 chr3 137714811 137715388 -89809190 + L1M2 LINE L1 445 1089 -5760 263 323 126 71 chr3 137715635 137716134 -89808444 + L2 LINE L2 2774 3301 -12 223 174 0 0 chr3 137716212 137716258 -89808320 + (TTCA)n Simple_repeat Simple_repeat 1 46 0 368 354 76 56 chr3 137716429 137716825 -89807753 - L2 LINE L2 -17 3255 2852 484 290 118 16 chr3 137717163 137717349 -89807229 + MIR SINE MIR 34 238 -24 924 217 72 58 chr3 137719316 137719676 -89804902 + MLT1A1 LTR MaLR 1 365 0 568 265 148 0 chr3 137719771 137719933 -89804645 - MER5A DNA MER1_type 0 189 4 590 215 40 28 chr3 137720076 137720382 -89804196 + MER58D DNA MER1_type 1 371 -15 1946 174 0 0 chr3 137720623 137721016 -89803562 - AluSx SINE Alu 0 393 1 312 252 114 92 chr3 137721016 137721464 -89803114 - HAL1 LINE L1 -999 1508 1051 2427 70 0 3 chr3 137722084 137722385 -89802193 - AluSg1 SINE Alu -9 300 1 186 43 0 0 chr3 137723861 137723884 -89800694 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 209 292 0 35 chr3 137725653 137725766 -89798812 + C-rich Low_complexity Low_complexity 2 110 0 649 196 49 6 chr3 137725794 137725957 -89798621 + L1PA16 LINE L1 5913 6082 -84 1566 165 32 52 chr3 137726609 137726918 -89797660 + AluJo SINE Alu 1 303 -9 355 346 53 0 chr3 137729750 137729883 -89794695 - MIR3 SINE MIR -38 170 31 26 0 0 0 chr3 137731262 137731288 -89793290 + AT_rich Low_complexity Low_complexity 1 26 0 2595 219 33 48 chr3 137732479 137733210 -89791368 + L1M2 LINE L1 1317 2036 -4743 483 176 59 0 chr3 137733190 137733373 -89791205 + L1MA7 LINE L1 5981 6280 -11 * 1356 235 43 85 chr3 137733974 137734715 -89789863 - L1M4 LINE L1 -2436 3710 3001 1045 171 0 0 chr3 137734897 137735061 -89789517 + AluJb SINE Alu 149 312 0 355 231 58 19 chr3 137737780 137737884 -89786694 + MIR SINE MIR 53 160 -102 * 415 250 171 23 chr3 137737882 137738098 -89786480 - L2 LINE L2 -1 3312 3065 5362 128 58 6 chr3 137738104 137739130 -89785448 - L1MA4 LINE L1 -6 6294 5216 2099 119 7 3 chr3 137739668 137739962 -89784616 + AluSx SINE Alu 1 295 -17 1140 187 99 34 chr3 137740094 137740356 -89784222 - AluJo SINE Alu -17 295 17 329 303 28 7 chr3 137740505 137740650 -89783928 + L1ME4a LINE L1 5572 5719 -402 329 269 118 8 chr3 137740713 137740832 -89783746 + L1ME4a LINE L1 5728 5859 -262 180 346 50 10 chr3 137741513 137741614 -89782964 - MIR SINE MIR -77 185 81 234 207 0 0 chr3 137743003 137743061 -89781517 + (CA)n Simple_repeat Simple_repeat 1 58 0 275 318 0 0 chr3 137743296 137743362 -89781216 - L2 LINE L2 -35 3237 3172 336 164 0 0 chr3 137744164 137744231 -89780347 + (CAGAGA)n Simple_repeat Simple_repeat 5 71 0 281 269 13 13 chr3 137745475 137745553 -89779025 + (CATATA)n Simple_repeat Simple_repeat 1 78 0 2297 97 0 0 chr3 137745694 137745994 -89778584 + AluY SINE Alu 1 300 -11 2241 82 0 36 chr3 137746073 137746379 -89778199 + AluY SINE Alu 1 295 -16 1410 171 12 8 chr3 137746396 137746636 -89777942 + AluJb SINE Alu 5 245 -67 4856 151 26 22 chr3 137746790 137747466 -89777112 - L1 LINE L1 -1076 5070 4398 447 19 0 0 chr3 137747466 137747518 -89777060 + (TCTA)n Simple_repeat Simple_repeat 4 55 0 2026 140 0 0 chr3 137747518 137747804 -89776774 - AluSx SINE Alu -26 286 1 4856 151 26 22 chr3 137747804 137748119 -89776459 - L1 LINE L1 -1747 4399 4074 266 258 106 30 chr3 137748337 137748469 -89776109 - MIR3 SINE MIR -5 203 62 * 467 247 31 66 chr3 137748463 137748664 -89775914 + MIR SINE MIR 64 256 -6 312 264 272 18 chr3 137749387 137749663 -89774915 + L2 LINE L2 2967 3312 -1 245 350 17 26 chr3 137749919 137750036 -89774542 - L2 LINE L2 -1 3312 3197 317 244 44 0 chr3 137750050 137750140 -89774438 - L2 LINE L2 -2402 912 819 753 221 74 0 chr3 137750149 137750312 -89774266 - MER58A DNA MER1_type -49 175 1 997 275 17 42 chr3 137750321 137750674 -89773904 - L2 LINE L2 -2500 814 471 2150 110 4 0 chr3 137752469 137752770 -89771808 - AluSx SINE Alu 0 302 1 255 303 26 0 chr3 137752791 137752867 -89771711 - L2 LINE L2 0 3313 3236 1707 189 61 11 chr3 137753136 137753592 -89770986 + L1M4 LINE L1 4200 4678 -1468 22 35 7 0 chr3 137753785 137753862 -89770716 + AT_rich Low_complexity Low_complexity 1 36 0 27 49 0 0 chr3 137753948 137753989 -89770589 + AT_rich Low_complexity Low_complexity 1 41 0 2146 110 41 0 chr3 137756068 137756360 -89768218 + AluSx SINE Alu 1 304 -8 186 143 0 0 chr3 137757274 137757309 -89767269 + (TTAAA)n Simple_repeat Simple_repeat 3 37 0 1735 173 14 7 chr3 137759008 137759303 -89765275 - AluSx SINE Alu -15 297 1 1199 216 73 29 chr3 137759983 137760474 -89764104 - L1MC5 LINE L1 -120 7841 7329 268 229 72 0 chr3 137760824 137760907 -89763671 - MARNA DNA Mariner -63 523 435 248 323 54 0 chr3 137760833 137760926 -89763652 + MARNA DNA Mariner 73 170 -416 * 351 113 0 0 chr3 137761032 137761085 -89763493 + (TTCC)n Simple_repeat Simple_repeat 2 54 0 342 80 0 0 chr3 137761272 137761322 -89763256 + (CA)n Simple_repeat Simple_repeat 2 51 0 209 239 0 0 chr3 137761944 137761990 -89762588 + L2 LINE L2 3224 3269 -3 556 210 210 60 chr3 137762640 137762921 -89761657 - MLT1H LTR MaLR -49 500 178 2216 141 28 3 chr3 137762923 137763278 -89761300 + THE1B LTR MaLR 1 364 0 417 230 0 72 chr3 137763471 137763610 -89760968 - MER94 DNA DNA 0 134 6 24 67 0 0 chr3 137764139 137764184 -89760394 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr3 137764803 137764833 -89759745 + AT_rich Low_complexity Low_complexity 1 30 0 279 327 71 9 chr3 137765007 137765120 -89759458 - L2 LINE L2 -8 3264 3145 326 247 177 48 chr3 137766638 137766824 -89757754 + MIR SINE MIR 47 256 -6 264 91 0 0 chr3 137768012 137768056 -89756522 + (TG)n Simple_repeat Simple_repeat 1 44 0 298 249 24 18 chr3 137768684 137768853 -89755725 + C-rich Low_complexity Low_complexity 2 171 0 * 446 200 22 44 chr3 137768828 137769151 -89755427 + CT-rich Low_complexity Low_complexity 1 315 0 231 236 36 0 chr3 137769167 137769222 -89755356 + C-rich Low_complexity Low_complexity 1 57 0 244 233 70 12 chr3 137771190 137771276 -89753302 - MER103 DNA DNA -49 117 27 401 289 56 21 chr3 137771338 137771480 -89753098 + MIR3 SINE MIR 30 176 -32 384 281 74 20 chr3 137771552 137771754 -89752824 + L2 LINE L2 2287 2499 -815 257 331 137 0 chr3 137771754 137771878 -89752700 + MIR SINE MIR 2 142 -120 21 0 0 0 chr3 137772337 137772358 -89752220 + AT_rich Low_complexity Low_complexity 1 21 0 495 153 76 34 chr3 137773423 137773541 -89751037 + MER2 DNA MER2_type 223 345 0 367 146 122 0 chr3 137773541 137773623 -89750955 + L1MB8 LINE L1 5828 5919 -259 1256 125 37 148 chr3 137773627 137773978 -89750600 + Tigger1 DNA MER2_type 1 312 -2106 2205 117 23 0 chr3 137773978 137774278 -89750300 - AluY SINE Alu -4 307 1 2695 162 6 23 chr3 137774621 137775147 -89749431 - L1MA5 LINE L1 -465 5835 5319 2004 85 44 0 chr3 137775185 137775456 -89749122 - AluSp SINE Alu -26 287 5 508 230 79 36 chr3 137775483 137775622 -89748956 + L2 LINE L2 3169 3313 0 454 322 16 22 chr3 137776579 137776762 -89747816 + L2 LINE L2 2907 3088 -225 541 131 12 0 chr3 137776767 137776851 -89747727 - MER81 DNA DNA 0 114 30 252 59 0 0 chr3 137776905 137776939 -89747639 + (CA)n Simple_repeat Simple_repeat 2 35 0 205 205 0 0 chr3 137777959 137777998 -89746580 + MER91 DNA MER1_type 90 128 -62 1447 229 11 16 chr3 137778375 137778746 -89745832 - L1MC/D LINE L1 -2143 5665 5297 279 90 0 34 chr3 137778743 137778810 -89745768 - L1MB2 LINE L1 -3 6177 6115 * 2685 110 42 0 chr3 137778866 137779293 -89745285 - L1MA5A LINE L1 -6 6291 5847 848 156 35 20 chr3 137779293 137779492 -89745086 + L1MA5A LINE L1 5646 5847 -450 606 310 95 28 chr3 137780941 137781225 -89743353 - L2 LINE L2 -1949 1365 1063 688 243 55 93 chr3 137781528 137781894 -89742684 - L1MDa LINE L1 -6133 407 56 932 297 66 20 chr3 137781919 137782465 -89742113 - L1M4 LINE L1 -810 5336 4766 1359 205 40 58 chr3 137782998 137783520 -89741058 - L1M4 LINE L1 -2705 3441 2929 589 198 48 0 chr3 137783520 137783646 -89740932 + AluJb SINE Alu 157 288 -24 1307 223 32 35 chr3 137783684 137784147 -89740431 - L1M4 LINE L1 -3203 2943 2482 348 24 0 0 chr3 137784148 137784189 -89740389 + (TG)n Simple_repeat Simple_repeat 2 42 0 639 160 0 0 chr3 137784190 137784290 -89740288 - FLAM_A SINE Alu -32 110 11 26 0 0 0 chr3 137785026 137785052 -89739526 + AT_rich Low_complexity Low_complexity 1 26 0 1185 233 83 35 chr3 137785148 137785604 -89738974 - L1MA10 LINE L1 -1 6333 5856 654 104 0 0 chr3 137785875 137785971 -89738607 + (CATATA)n Simple_repeat Simple_repeat 1 96 0 316 335 20 20 chr3 137787469 137787672 -89736906 - HAL1 LINE L1 -811 1696 1494 994 178 5 35 chr3 137787897 137788094 -89736484 + AluSx SINE Alu 5 195 -117 420 287 68 75 chr3 137788714 137789167 -89735411 - HAL1 LINE L1 -2057 450 1 2391 67 0 35 chr3 137789473 137789787 -89734791 - AluY SINE Alu -8 303 1 21 36 0 0 chr3 137789792 137789820 -89734758 + AT_rich Low_complexity Low_complexity 1 28 0 332 277 58 39 chr3 137790210 137790365 -89734213 + MIR SINE MIR 92 249 -13 2166 104 13 0 chr3 137791096 137791394 -89733184 - AluSp SINE Alu -11 302 1 249 318 141 28 chr3 137792456 137792711 -89731867 + L2 LINE L2 2130 2413 -901 671 213 0 0 chr3 137793133 137793269 -89731309 + Tigger3(Golem) DNA MER2_type 2894 3029 0 275 210 84 34 chr3 137793329 137793448 -89731130 - L1ME4a LINE L1 -30 6091 5967 446 246 6 49 chr3 137793464 137793647 -89730931 - L1MC5 LINE L1 -74 7887 7713 27 29 0 0 chr3 137793737 137793771 -89730807 + AT_rich Low_complexity Low_complexity 1 34 0 248 180 16 33 chr3 137793898 137793959 -89730619 + MIR SINE MIR 186 245 -17 506 313 21 21 chr3 137793979 137794171 -89730407 - MIR SINE MIR 0 262 71 257 384 53 0 chr3 137794292 137794498 -89730080 + L2 LINE L2 2511 2727 -587 613 266 13 73 chr3 137794703 137795004 -89729574 + MLT1G3 LTR MaLR 1 283 -247 255 253 0 0 chr3 137795032 137795111 -89729467 + (TG)n Simple_repeat Simple_repeat 1 79 0 717 198 82 0 chr3 137795703 137795946 -89728632 - L1MA6 LINE L1 -300 6000 5738 926 110 28 0 chr3 137795949 137796094 -89728484 + L1MA6 LINE L1 5606 5754 -546 288 389 40 0 chr3 137796561 137796687 -89727891 - L2 LINE L2 -626 2688 2558 1997 140 8 20 chr3 137796692 137797049 -89727529 - MER39B LTR ERV1 -3 650 298 1329 209 65 15 chr3 137797266 137797605 -89726973 - MLT1A1 LTR MaLR 0 365 10 22 0 0 0 chr3 137799120 137799142 -89725436 + AT_rich Low_complexity Low_complexity 1 22 0 261 372 31 0 chr3 137799302 137799431 -89725147 + L3 LINE CR1 1407 1539 -38 200 333 99 0 chr3 137799945 137800056 -89724522 - MER5A DNA MER1_type -8 181 60 190 192 154 0 chr3 137800619 137800671 -89723907 - L3 LINE CR1 -15 1562 1503 259 335 19 25 chr3 137800696 137800857 -89723721 - MER117 DNA MER1_type -34 163 4 282 303 73 0 chr3 137800857 137800966 -89723612 - MIR3 SINE MIR -45 163 47 197 43 0 0 chr3 137800973 137800996 -89723582 + (T)n Simple_repeat Simple_repeat 1 23 0 1243 217 61 45 chr3 137802896 137803085 -89721493 - L1ME LINE L1 -507 5659 5474 1530 172 63 0 chr3 137803085 137803353 -89721225 + AluJb SINE Alu 1 285 -27 190 0 67 0 chr3 137803357 137803387 -89721191 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1243 217 61 45 chr3 137803387 137803649 -89720929 - L1ME LINE L1 -694 5472 5216 242 29 29 0 chr3 137803649 137803684 -89720894 + (ATTG)n Simple_repeat Simple_repeat 1 36 0 1916 109 8 4 chr3 137803684 137803949 -89720629 - AluSg SINE Alu -44 266 1 1243 217 61 45 chr3 137803949 137804184 -89720394 - L1ME LINE L1 -949 5217 4957 288 155 0 35 chr3 137804474 137804532 -89720046 - L1P LINE L1 -1207 4939 4884 403 287 8 16 chr3 137804643 137804765 -89719813 + MIR SINE MIR 28 148 -114 349 243 93 43 chr3 137805084 137805224 -89719354 - MIR SINE MIR -9 253 107 27 0 0 0 chr3 137805391 137805418 -89719160 + AT_rich Low_complexity Low_complexity 1 27 0 618 259 31 12 chr3 137805767 137805929 -89718649 + LTR33 LTR ERVL 14 178 -343 233 57 29 0 chr3 137805946 137805981 -89718597 + (TTCA)n Simple_repeat Simple_repeat 2 37 0 225 275 101 0 chr3 137806018 137806087 -89718491 + LTR33 LTR ERVL 263 338 -183 267 306 106 53 chr3 137806090 137806374 -89718204 - L2 LINE L2 -618 2696 2398 22 35 0 0 chr3 137806820 137806849 -89717729 + GC_rich Low_complexity Low_complexity 1 29 0 2244 122 0 3 chr3 137807336 137807639 -89716939 + AluSx SINE Alu 1 302 -10 349 292 47 103 chr3 137808235 137808643 -89715935 + L1PA12 LINE L1 1402 1786 -5795 291 281 8 31 chr3 137810507 137810635 -89713943 - AluJb SINE Alu -175 127 3 27 73 0 0 chr3 137811315 137811370 -89713208 + AT_rich Low_complexity Low_complexity 1 55 0 22 56 0 0 chr3 137811415 137811451 -89713127 + AT_rich Low_complexity Low_complexity 1 36 0 1008 245 30 13 chr3 137812325 137812830 -89711748 - L1M4 LINE L1 -1137 5009 4427 431 63 16 0 chr3 137813687 137813750 -89710828 + (TA)n Simple_repeat Simple_repeat 2 65 0 196 115 0 39 chr3 137813868 137813920 -89710658 + (CCCCG)n Simple_repeat Simple_repeat 1 50 0 42 0 0 0 chr3 137813920 137813962 -89710616 + GC_rich Low_complexity Low_complexity 1 42 0 295 193 40 33 chr3 137813962 137814112 -89710466 + C-rich Low_complexity Low_complexity 3 153 0 217 202 65 8 chr3 137814086 137814210 -89710368 + (CCGCG)n Simple_repeat Simple_repeat 1 131 0 * 193 76 15 61 chr3 137814212 137814278 -89710300 + (CCCCCG)n Simple_repeat Simple_repeat 5 67 0 257 171 24 41 chr3 137814279 137814402 -89710176 + (CCG)n Simple_repeat Simple_repeat 1 121 0 220 111 37 0 chr3 137814403 137814457 -89710121 + (CCCG)n Simple_repeat Simple_repeat 3 58 0 53 32 0 0 chr3 137814463 137814525 -89710053 + GC_rich Low_complexity Low_complexity 1 62 0 1368 174 24 35 chr3 137815187 137815475 -89709103 - MER44D DNA MER2_type -1 604 265 1124 153 70 9 chr3 137815480 137815695 -89708883 - MER30 DNA MER1_type 0 230 3 934 127 0 8 chr3 137816008 137816142 -89708436 - FLAM_C SINE Alu 0 133 1 23 33 0 0 chr3 137817252 137817282 -89707296 + GC_rich Low_complexity Low_complexity 1 30 0 696 336 22 4 chr3 137817585 137817853 -89706725 + PRIMA41-int LTR ERV1 1578 1850 -5906 2372 207 46 39 chr3 137817858 137818472 -89706106 + LTR5 LTR ERVK 5 622 -347 4152 214 29 10 chr3 137818713 137819757 -89704821 - L1M4 LINE L1 -2089 4057 2994 21 36 0 0 chr3 137820031 137820059 -89704519 + AT_rich Low_complexity Low_complexity 1 28 0 331 119 77 6 chr3 137820059 137820227 -89704351 + (TA)n Simple_repeat Simple_repeat 1 180 0 40 37 0 0 chr3 137820227 137820281 -89704297 + AT_rich Low_complexity Low_complexity 1 54 0 241 183 43 6 chr3 137820284 137820448 -89704130 + (TA)n Simple_repeat Simple_repeat 1 170 0 29 47 0 0 chr3 137820456 137820499 -89704079 + AT_rich Low_complexity Low_complexity 1 43 0 28 0 0 0 chr3 137823309 137823337 -89701241 + AT_rich Low_complexity Low_complexity 1 28 0 654 164 0 9 chr3 137823520 137823630 -89700948 + AluSg/x SINE Alu 202 310 0 282 356 6 28 chr3 137823796 137823976 -89700602 - Charlie8 DNA MER1_type -2241 176 1 22 0 0 0 chr3 137824816 137824838 -89699740 + AT_rich Low_complexity Low_complexity 1 22 0 1263 320 64 60 chr3 137826101 137826772 -89697806 + L1MC4a LINE L1 167 776 -5764 537 182 0 0 chr3 137826785 137826895 -89697683 + G-rich Low_complexity Low_complexity 1 110 0 23 0 0 0 chr3 137827922 137827945 -89696633 + AT_rich Low_complexity Low_complexity 1 23 0 226 171 91 34 chr3 137828457 137828545 -89696033 + L1MC4a LINE L1 1873 1965 -4575 239 284 149 40 chr3 137828638 137828913 -89695665 + L1MC4a LINE L1 2205 2509 -4212 1769 157 14 4 chr3 137829019 137829299 -89695279 + AluSx SINE Alu 1 283 -29 182 307 57 23 chr3 137829772 137829860 -89694718 - L3 LINE CR1 -4 1573 1483 399 257 18 9 chr3 137831026 137831135 -89693443 - MER69 DNA AcHobo -1105 121 12 199 256 0 0 chr3 137833460 137833503 -89691075 - L2 LINE L2 -5 3267 3225 195 42 0 0 chr3 137834334 137834358 -89690220 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 308 304 0 10 chr3 137834732 137834834 -89689744 - L3 LINE CR1 -65 1512 1412 435 235 26 17 chr3 137835076 137835191 -89689387 + MIR SINE MIR 33 148 -114 437 121 0 8 chr3 137836162 137836249 -89688329 + L1M LINE L1 5311 5394 -966 2059 117 3 13 chr3 137836249 137836653 -89687925 + AluSg SINE Alu 1 401 0 531 234 63 32 chr3 137836816 137836910 -89687668 - MER41D LTR ERV1 0 557 455 1847 124 64 7 chr3 137836910 137837193 -89687385 + AluSc SINE Alu 2 300 -9 531 234 63 32 chr3 137837193 137837256 -89687322 - MER41D LTR ERV1 -102 455 395 847 210 11 16 chr3 137837295 137837481 -89687097 + AluSx SINE Alu 47 231 -81 1969 135 0 31 chr3 137837906 137838224 -89686354 + AluSx SINE Alu 1 308 -4 1820 164 32 0 chr3 137838432 137838712 -89685866 - AluSx SINE Alu -23 289 1 1749 144 3 126 chr3 137839206 137839595 -89684983 + MER7A DNA MER2_type 7 345 -1 552 224 41 0 chr3 137839669 137839816 -89684762 + L1MC4a LINE L1 2922 3074 -3466 1415 147 41 4 chr3 137839820 137840065 -89684513 + MER2 DNA MER2_type 2 255 -90 1818 80 0 60 chr3 137840071 137840320 -89684258 - AluSx SINE Alu -23 289 56 1725 230 36 36 chr3 137840328 137840942 -89683636 + L1MC4a LINE L1 3604 4217 -2323 1490 125 33 8 chr3 137840923 137841163 -89683415 + MSTA-int LTR MaLR 1405 1650 -1 * 2363 142 43 17 chr3 137841166 137841581 -89682997 + MSTA LTR MaLR 3 428 0 2355 85 3 44 chr3 137841934 137842250 -89682328 + AluSp SINE Alu 1 303 -10 222 0 51 26 chr3 137842470 137842509 -89682069 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 539 116 14 159 chr3 137842570 137842708 -89681870 - L1MB8 LINE L1 -144 6034 5917 1604 244 124 52 chr3 137842710 137843442 -89681136 + L1MC4a LINE L1 5779 6563 -1639 2270 121 3 0 chr3 137843652 137843957 -89680621 + AluSx SINE Alu 1 306 -6 1245 212 0 30 chr3 137844060 137844324 -89680254 - AluJo SINE Alu -13 299 44 643 279 36 6 chr3 137844603 137844768 -89679810 - MIR SINE MIR -88 174 5 24 0 0 0 chr3 137845510 137845534 -89679044 + AT_rich Low_complexity Low_complexity 1 24 0 2486 61 3 10 chr3 137846505 137846816 -89677762 + AluY SINE Alu 3 311 0 2183 108 0 38 chr3 137847011 137847153 -89677425 + AluSc SINE Alu 1 147 -162 2462 73 3 0 chr3 137847153 137847456 -89677122 + AluY SINE Alu 1 304 -7 2183 108 0 38 chr3 137847456 137847627 -89676951 + AluSc SINE Alu 147 302 -7 2165 126 7 7 chr3 137847707 137848016 -89676562 + AluSx SINE Alu 3 311 -1 1185 231 36 96 chr3 137848394 137848969 -89675609 + MER34 LTR ERV1 2 542 0 2487 75 0 0 chr3 137849528 137849834 -89674744 + AluSc SINE Alu 1 306 -3 394 274 47 0 chr3 137849843 137849949 -89674629 + L1M3b LINE L1 5 115 -6166 2153 107 10 7 chr3 137849949 137850248 -89674330 + AluSx SINE Alu 2 301 -11 457 220 0 0 chr3 137851195 137851295 -89673283 + AluSg/x SINE Alu 202 301 -11 431 145 0 0 chr3 137851295 137851357 -89673221 - AluJ/FLAM SINE Alu -249 63 2 944 203 0 0 chr3 137851366 137851529 -89673049 - FRAM SINE Alu -3 163 1 233 349 0 0 chr3 137851610 137851676 -89672902 + polypyrimidine Low_complexity Low_complexity 3 68 0 2029 148 0 3 chr3 137851703 137852007 -89672571 + AluSx SINE Alu 1 303 -9 807 144 0 0 chr3 137852155 137852273 -89672305 + FLAM_C SINE Alu 1 118 -15 24 67 0 0 chr3 137852273 137852318 -89672260 + AT_rich Low_complexity Low_complexity 1 45 0 278 243 86 0 chr3 137853124 137853194 -89671384 + MIR SINE MIR 22 97 -165 2402 71 10 0 chr3 137853194 137853491 -89671087 - AluY SINE Alu -11 300 1 2768 137 2 37 chr3 137853534 137853995 -89670583 - MER65A LTR ERV1 0 445 1 4251 175 13 29 chr3 137854086 137854553 -89670025 + MER21B LTR ERV1 39 491 -372 1735 169 7 7 chr3 137854553 137854848 -89669730 + AluJo SINE Alu 3 297 -15 4251 175 13 29 chr3 137854848 137855151 -89669427 + MER21B LTR ERV1 491 797 -66 2435 73 0 3 chr3 137855167 137855469 -89669109 - AluSg SINE Alu -9 301 1 297 363 22 15 chr3 137855478 137855613 -89668965 - MIR SINE MIR -122 140 5 232 294 0 69 chr3 137855672 137856478 -89668100 + GA-rich Low_complexity Low_complexity 2 150 0 249 242 32 75 chr3 137855720 137855809 -89668769 + (CAGAGA)n Simple_repeat Simple_repeat 3 94 -86 2262 90 0 7 chr3 137855809 137856151 -89668427 - AluY SINE Alu 0 311 1 249 242 32 75 chr3 137856151 137856161 -89668417 + (CAGAGA)n Simple_repeat Simple_repeat 94 103 -77 2519 65 0 0 chr3 137856161 137856467 -89668111 - AluY SINE Alu -5 306 1 249 242 32 75 chr3 137856467 137856552 -89668026 + (CAGAGA)n Simple_repeat Simple_repeat 103 180 0 1000 172 0 12 chr3 137856568 137856737 -89667841 - FRAM SINE Alu -10 166 1 1834 149 0 17 chr3 137856741 137857030 -89667548 - AluSx SINE Alu -19 293 10 834 204 30 0 chr3 137857088 137857255 -89667323 + FAM SINE Alu 4 175 0 322 264 36 55 chr3 137857543 137857653 -89666925 + L2 LINE L2 3158 3265 -7 * 875 191 84 100 chr3 137857625 137857773 -89666805 - L2 LINE L2 0 3313 3164 1835 161 3 7 chr3 137857773 137858071 -89666507 + AluSx SINE Alu 1 297 -15 875 191 84 100 chr3 137858071 137858231 -89666347 - L2 LINE L2 -149 3164 3010 2011 128 3 16 chr3 137858526 137858830 -89665748 + AluSx SINE Alu 1 300 -12 366 80 0 0 chr3 137858830 137858880 -89665698 + (GA)n Simple_repeat Simple_repeat 1 50 0 2447 50 7 3 chr3 137858943 137859244 -89665334 + AluY SINE Alu 1 302 -9 2328 151 12 41 chr3 137859275 137859686 -89664892 + MSTB LTR MaLR 1 399 -27 222 118 0 0 chr3 137859689 137859723 -89664855 + (TCCC)n Simple_repeat Simple_repeat 3 36 0 1050 82 6 22 chr3 137859725 137859908 -89664670 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 220 91 30 0 chr3 137859910 137859943 -89664635 + CT-rich Low_complexity Low_complexity 1 34 0 1910 126 4 0 chr3 137859955 137860225 -89664353 - AluSx SINE Alu -41 271 1 375 173 0 0 chr3 137860230 137860305 -89664273 - AluS SINE Alu 0 300 226 1767 138 4 4 chr3 137860306 137860560 -89664018 - AluSx SINE Alu -56 256 3 1106 159 62 38 chr3 137860743 137861032 -89663546 - AluSg SINE Alu -3 297 2 24 67 0 0 chr3 137862190 137862235 -89662343 + AT_rich Low_complexity Low_complexity 1 45 0 636 268 18 41 chr3 137862249 137862452 -89662126 + MIR3 SINE MIR 1 202 -6 312 286 71 0 chr3 137863243 137863327 -89661251 - L2 LINE L2 -1 3271 3182 212 307 93 67 chr3 137863370 137863520 -89661058 - MIR SINE MIR -48 214 61 286 309 55 36 chr3 137863733 137863843 -89660735 - L2 LINE L2 -46 3226 3115 312 359 92 27 chr3 137864372 137864896 -89659682 - L2 LINE L2 -965 2349 1792 1346 172 41 11 chr3 137864935 137865202 -89659376 + MER58B DNA MER1_type 34 308 -33 265 312 76 13 chr3 137865230 137865387 -89659191 - L2 LINE L2 -1516 1798 1632 762 154 8 15 chr3 137866486 137866616 -89657962 - MER33 DNA MER1_type -195 129 1 467 302 37 33 chr3 137866839 137867054 -89657524 - MARNA DNA Mariner -350 236 21 245 67 0 67 chr3 137868094 137868139 -89656439 + (A)n Simple_repeat Simple_repeat 1 42 0 1438 126 27 14 chr3 137868204 137868427 -89656151 + AluSg/x SINE Alu 85 310 0 204 279 0 16 chr3 137869208 137869269 -89655309 - MIR3 SINE MIR -31 177 118 412 279 255 14 chr3 137869277 137869485 -89655093 + MIR SINE MIR 5 262 0 305 261 113 103 chr3 137869501 137869696 -89654882 - L2 LINE L2 -6 3266 3070 181 311 90 41 chr3 137870058 137870180 -89654398 - L2 LINE L2 -458 2856 2729 246 348 99 11 chr3 137870230 137870411 -89654167 - L2 LINE L2 -738 2576 2380 204 353 78 10 chr3 137870425 137870527 -89654051 - MIR3 SINE MIR -86 122 14 365 304 11 60 chr3 137870531 137870715 -89653863 - MER5B DNA MER1_type -3 175 1 2117 108 11 0 chr3 137871838 137872171 -89652407 - AluSx SINE Alu 0 336 1 2372 144 13 5 chr3 137872323 137872719 -89651859 + L1MB7 LINE L1 5786 6184 0 216 0 0 0 chr3 137872828 137872852 -89651726 + (TAAAAA)n Simple_repeat Simple_repeat 1 24 0 1882 134 4 7 chr3 137872854 137873131 -89651447 - AluSx SINE Alu -36 276 1 240 86 0 0 chr3 137873249 137873284 -89651294 + (GA)n Simple_repeat Simple_repeat 2 36 0 22 70 0 0 chr3 137876408 137876451 -89648127 + AT_rich Low_complexity Low_complexity 1 43 0 819 165 110 6 chr3 137876707 137876871 -89647707 - MER20 DNA MER1_type -3 216 36 636 229 157 0 chr3 137878941 137879094 -89645484 + MER5B DNA MER1_type 2 178 0 290 197 0 47 chr3 137881058 137881185 -89643393 + CT-rich Low_complexity Low_complexity 1 121 0 2563 182 91 166 chr3 137881394 137881949 -89642629 + L1MC4 LINE L1 6461 7056 -986 899 129 0 23 chr3 137881949 137882081 -89642497 + FLAM_C SINE Alu 1 129 -14 2563 182 91 166 chr3 137882081 137882766 -89641812 + L1MC4 LINE L1 7056 7729 -313 241 220 0 0 chr3 137882785 137882844 -89641734 + L1MC4 LINE L1 7982 8040 -2 501 263 181 33 chr3 137883154 137883580 -89640998 - L1MC4a LINE L1 -1910 5898 5410 1033 162 210 7 chr3 137883580 137883851 -89640727 - LTR52 LTR ERVL -95 326 1 232 284 78 29 chr3 137884384 137884588 -89639990 - L1MC4a LINE L1 -1073 5073 4860 216 0 0 0 chr3 137884749 137884773 -89639805 + (TG)n Simple_repeat Simple_repeat 1 24 0 2107 96 7 3 chr3 137884774 137885056 -89639522 - AluSq SINE Alu -30 283 1 3083 171 37 18 chr3 137885160 137885577 -89639001 - Tigger6a DNA MER2_type -970 627 193 2454 184 30 20 chr3 137885577 137886077 -89638501 - MLT1D LTR MaLR 0 505 1 3083 171 37 18 chr3 137886077 137886274 -89638304 - Tigger6a DNA MER2_type -1404 193 1 205 29 29 29 chr3 137887913 137887948 -89636630 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1987 124 0 36 chr3 137890238 137890544 -89634034 + AluSx SINE Alu 1 295 -17 467 272 128 0 chr3 137890814 137890939 -89633639 + Charlie1b DNA MER1_type 7 147 -376 240 258 30 0 chr3 137890944 137891010 -89633568 - MER81 DNA DNA -32 82 15 1624 183 52 13 chr3 137891013 137891401 -89633177 + Charlie1b DNA MER1_type 121 523 0 740 165 0 0 chr3 137892474 137892595 -89631983 + FLAM_A SINE Alu 20 140 -2 1881 270 98 29 chr3 137892690 137893483 -89631095 + L1ME3A LINE L1 5280 6127 -43 206 54 0 54 chr3 137893514 137893551 -89631027 + (CAAAAA)n Simple_repeat Simple_repeat 5 39 0 1782 171 3 16 chr3 137894596 137894900 -89629678 - AluJo SINE Alu -12 300 1 1716 155 0 21 chr3 137895702 137895992 -89628586 - AluJb SINE Alu -17 295 12 1786 255 94 22 chr3 137896635 137897516 -89627062 - L1ME2 LINE L1 -11 6153 5191 14921 150 26 34 chr3 137897523 137898220 -89626358 - L1MA3 LINE L1 0 7724 7023 216 0 0 0 chr3 137898220 137898244 -89626334 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2107 108 7 0 chr3 137898244 137898523 -89626055 - AluSg SINE Alu -29 281 1 14921 150 26 34 chr3 137898523 137900948 -89623630 - L1MA3 LINE L1 -700 7024 4645 2102 136 0 0 chr3 137900948 137901243 -89623335 + AluSx SINE Alu 1 295 -17 14921 150 26 34 chr3 137901243 137902539 -89622039 - L1MA3 LINE L1 -3079 4645 3340 1995 124 31 3 chr3 137902539 137902830 -89621748 - AluSx SINE Alu -13 299 1 5068 106 80 16 chr3 137902830 137903723 -89620855 - L1MA3 LINE L1 -4321 3244 2294 2160 102 7 10 chr3 137903723 137904027 -89620551 - AluSc SINE Alu -1 308 6 681 236 5 42 chr3 137904062 137904253 -89620325 + L1ME1 LINE L1 5978 6161 -5 21 0 0 0 chr3 137904619 137904640 -89619938 + AT_rich Low_complexity Low_complexity 1 21 0 724 281 55 0 chr3 137905406 137905605 -89618973 + MIR SINE MIR 42 251 -11 1731 60 0 0 chr3 137905738 137905956 -89618622 - L1PA5 LINE L1 -1 6153 5936 13348 93 10 1 chr3 137905952 137907788 -89616790 - L1P LINE L1 -4292 1854 2 180 250 0 0 chr3 137907809 137907873 -89616705 + T-rich Low_complexity Low_complexity 1 64 0 41000 38 2 2 chr3 137908056 137913787 -89610791 + L1PA3 LINE L1 445 6178 0 598 174 98 23 chr3 137913816 137913948 -89610630 + MIR SINE MIR 48 189 -73 662 217 0 22 chr3 137914135 137914273 -89610305 + AluJo SINE Alu 2 136 -176 194 282 26 51 chr3 137914616 137914694 -89609884 - L2 LINE L2 -4 3268 3193 2618 61 0 0 chr3 137914735 137915046 -89609532 - AluY SINE Alu 0 311 1 273 241 0 0 chr3 137915978 137916036 -89608542 + L2 LINE L2 3215 3272 0 652 249 92 27 chr3 137916339 137916632 -89607946 + L1MC/D LINE L1 5315 5626 -2182 2268 99 7 0 chr3 137916736 137917029 -89607549 + AluSq SINE Alu 1 295 -18 23 101 0 0 chr3 137917080 137917159 -89607419 + AT_rich Low_complexity Low_complexity 1 79 0 34 42 0 0 chr3 137918643 137918691 -89605887 + AT_rich Low_complexity Low_complexity 1 48 0 2298 99 3 0 chr3 137918703 137918996 -89605582 + AluSp SINE Alu 2 295 -18 1202 215 15 44 chr3 137919293 137919567 -89605011 + AluJo SINE Alu 14 279 -33 439 133 0 0 chr3 137919600 137919660 -89604918 + AluJ/FLAM SINE Alu 5 64 -248 279 322 43 0 chr3 137919706 137919821 -89604757 + L2 LINE L2 2540 2659 -655 360 299 49 35 chr3 137920010 137920357 -89604221 + L2 LINE L2 2680 3070 -243 2131 119 3 3 chr3 137920449 137920751 -89603827 + AluSq SINE Alu 1 302 -11 490 252 204 7 chr3 137921839 137921986 -89602592 - MER5A DNA MER1_type -6 183 8 310 273 13 0 chr3 137921994 137922071 -89602507 - MIR3 SINE MIR -49 159 82 2147 122 0 0 chr3 137923913 137924199 -89600379 + AluSx SINE Alu 4 289 -23 24 0 0 0 chr3 137924210 137924234 -89600344 + AT_rich Low_complexity Low_complexity 1 24 0 2002 138 7 7 chr3 137924243 137924540 -89600038 + AluSx SINE Alu 1 297 -15 625 307 0 34 chr3 137925572 137925751 -89598827 - MIR3 SINE MIR -15 193 21 340 311 142 11 chr3 137925805 137925822 -89598756 + MIR SINE MIR 56 69 -193 2160 100 0 0 chr3 137925822 137926102 -89598476 - AluSg SINE Alu -5 305 26 340 311 142 11 chr3 137926102 137926267 -89598311 + MIR SINE MIR 69 262 0 2569 210 26 12 chr3 137926427 137927007 -89597571 - L1M4 LINE L1 -1828 4318 3731 605 160 30 0 chr3 137927017 137927117 -89597461 - U13 snRNA snRNA -1 103 1 2215 134 41 0 chr3 137927158 137927500 -89597078 + MER46B DNA MER2_type 1 231 -5 1643 253 59 21 chr3 137927503 137927735 -89596843 - L1M4 LINE L1 -2441 3705 3483 1781 139 42 127 chr3 137927735 137928168 -89596410 - MSTD LTR MaLR 0 396 1 1643 253 59 21 chr3 137928168 137928515 -89596063 - L1M4 LINE L1 -2663 3483 3104 456 316 18 59 chr3 137928517 137928734 -89595844 - L1M4 LINE L1 -3569 2577 2372 1841 129 47 0 chr3 137928734 137929012 -89595566 + AluSx SINE Alu 1 291 -21 456 316 18 59 chr3 137929012 137929066 -89595512 - L1M4 LINE L1 -3774 2372 2317 501 224 24 0 chr3 137929096 137929221 -89595357 - L1M4 LINE L1 -3120 3026 2899 1174 178 14 0 chr3 137929223 137929431 -89595147 - AluJb SINE Alu -16 296 86 545 207 82 0 chr3 137929431 137929566 -89595012 - L1M4 LINE L1 -3238 2908 2763 1524 82 0 48 chr3 137929566 137929773 -89594805 - AluSc SINE Alu -112 197 1 320 251 145 60 chr3 137929784 137929902 -89594676 - L1 LINE L1 -1656 4490 4383 2299 93 0 37 chr3 137929902 137930224 -89594354 - AluSg SINE Alu 0 310 1 320 251 145 60 chr3 137930224 137930388 -89594190 - L1 LINE L1 -1763 4383 4184 23 0 0 0 chr3 137930430 137930453 -89594125 + AT_rich Low_complexity Low_complexity 1 23 0 1336 153 22 5 chr3 137930536 137930759 -89593819 + AluJb SINE Alu 86 312 0 290 170 0 0 chr3 137930813 137930860 -89593718 + U6 snRNA snRNA 1 47 -60 1783 168 0 13 chr3 137930922 137931058 -89593520 + AluJb SINE Alu 1 137 -175 2217 102 0 3 chr3 137931058 137931353 -89593225 + AluSx SINE Alu 1 294 -18 1783 168 0 13 chr3 137931353 137931514 -89593064 + AluJb SINE Alu 137 294 -18 1017 128 0 0 chr3 137932770 137932903 -89591675 + FLAM_C SINE Alu 1 133 0 181 309 95 12 chr3 137933088 137933172 -89591406 + MIR SINE MIR 51 141 -67 219 88 0 0 chr3 137934103 137934137 -89590441 + (CTTTG)n Simple_repeat Simple_repeat 2 35 0 * 672 13 0 0 chr3 137934136 137934213 -89590365 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 1529 186 17 28 chr3 137934232 137934523 -89590055 - AluJo SINE Alu -22 290 3 1197 198 13 4 chr3 137934604 137934836 -89589742 + AluJo SINE Alu 15 248 -64 723 154 0 65 chr3 137934840 137935002 -89589576 + AluJb SINE Alu 168 321 0 2223 132 0 0 chr3 137935088 137935391 -89589187 + AluSx SINE Alu 1 303 -9 1732 190 7 7 chr3 137935411 137935721 -89588857 + AluJo SINE Alu 1 310 -2 562 181 53 23 chr3 137936420 137936500 -89588078 + Charlie5 DNA MER1_type 1 88 -2536 1591 169 14 27 chr3 137936500 137936795 -89587783 - AluJo SINE Alu -18 294 4 562 181 53 23 chr3 137936795 137936847 -89587731 + Charlie5 DNA MER1_type 88 137 -2487 * 1021 154 51 5 chr3 137936844 137937039 -89587539 + Charlie5 DNA MER1_type 2246 2449 -163 1822 112 94 0 chr3 137937162 137937429 -89587149 + AluSx SINE Alu 1 292 -20 21 36 0 0 chr3 137937475 137937503 -89587075 + AT_rich Low_complexity Low_complexity 1 28 0 1376 117 0 5 chr3 137937620 137937808 -89586770 + AluSg/x SINE Alu 110 296 -16 252 0 0 0 chr3 137937823 137937851 -89586727 + (CA)n Simple_repeat Simple_repeat 2 29 0 202 158 53 18 chr3 137937978 137938035 -89586543 + T-rich Low_complexity Low_complexity 2 60 0 1231 115 0 0 chr3 137938040 137938205 -89586373 + AluSc SINE Alu 63 227 -82 1427 127 24 71 chr3 137938225 137938509 -89586069 + AluJb SINE Alu 73 344 0 477 111 0 0 chr3 137938530 137938593 -89585985 + AluJ/FLAM SINE Alu 2 64 -248 * 709 154 18 0 chr3 137938591 137938701 -89585877 - FLAM_A SINE Alu -30 112 1 2238 99 0 26 chr3 137939441 137939753 -89584825 + AluY SINE Alu 1 304 -7 842 175 0 22 chr3 137939820 137939957 -89584621 - AluJo SINE Alu -177 135 2 2447 85 3 3 chr3 137939992 137940298 -89584280 + AluSp SINE Alu 1 306 -7 2026 127 0 4 chr3 137940333 137940608 -89583970 + AluSx SINE Alu 1 274 -38 2036 99 27 20 chr3 137940861 137941154 -89583424 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr3 137941717 137941738 -89582840 + AT_rich Low_complexity Low_complexity 1 21 0 864 110 8 0 chr3 137942320 137942447 -89582131 - AluSg/x SINE Alu 0 312 185 383 276 134 0 chr3 137942465 137942592 -89581986 - MIR SINE MIR -117 145 2 2319 89 3 3 chr3 137942639 137942942 -89581636 - AluSx SINE Alu -8 304 2 274 289 82 52 chr3 137942951 137943145 -89581433 + L2 LINE L2 3113 3312 -1 21 0 0 0 chr3 137945110 137945131 -89579447 + AT_rich Low_complexity Low_complexity 1 21 0 1892 136 35 3 chr3 137945693 137945979 -89578599 - AluSx SINE Alu -17 295 1 2154 117 3 0 chr3 137946052 137946350 -89578228 - AluSx SINE Alu -13 299 1 220 308 123 0 chr3 137946545 137946610 -89577968 + MIR SINE MIR 34 106 -156 220 228 53 0 chr3 137946671 137946728 -89577850 + MIR SINE MIR 182 241 -21 624 350 93 32 chr3 137946808 137947057 -89577521 + L2 LINE L2 2420 2652 -662 1606 110 48 100 chr3 137947057 137947366 -89577212 - AluSq SINE Alu -20 293 1 624 350 93 32 chr3 137947366 137947641 -89576937 + L2 LINE L2 2652 2976 -338 804 230 0 0 chr3 137947645 137947806 -89576772 - AluSg/x SINE Alu -12 298 138 2094 114 0 35 chr3 137947893 137948210 -89576368 - AluSx SINE Alu -6 306 1 2255 89 38 7 chr3 137948872 137949165 -89575413 + AluSx SINE Alu 1 302 -10 430 233 68 0 chr3 137949654 137949757 -89574821 + MIR SINE MIR 42 151 -57 25 0 0 0 chr3 137949980 137950005 -89574573 + AT_rich Low_complexity Low_complexity 1 25 0 236 167 0 48 chr3 137951400 137951442 -89573136 + L2 LINE L2 3203 3242 -30 2212 98 53 39 chr3 137952401 137952758 -89571820 + L1PA16 LINE L1 5805 6166 0 1875 159 7 3 chr3 137953111 137953407 -89571171 + AluJo SINE Alu 3 299 -13 21 36 0 0 chr3 137953554 137953582 -89570996 + AT_rich Low_complexity Low_complexity 1 28 0 2555 230 130 57 chr3 137953585 137954312 -89570266 - HAL1 LINE L1 -105 2402 1582 2408 91 3 0 chr3 137954312 137954619 -89569959 - AluSq SINE Alu -5 308 1 2555 230 130 57 chr3 137954619 137954884 -89569694 - HAL1 LINE L1 -925 1582 1338 1077 270 56 34 chr3 137954893 137955430 -89569148 + L1MC4a LINE L1 2539 3087 -3059 1782 171 31 0 chr3 137955431 137955723 -89568855 + AluSx SINE Alu 1 301 -11 965 260 82 48 chr3 137955786 137955875 -89568703 + L1ME LINE L1 5258 5342 -828 1986 63 112 0 chr3 137955875 137956144 -89568434 + AluY SINE Alu 1 299 -12 965 260 82 48 chr3 137956144 137956234 -89568344 + L1ME LINE L1 5342 5427 -743 2099 134 0 0 chr3 137956234 137956526 -89568052 + AluSg SINE Alu 1 292 -18 965 260 82 48 chr3 137956526 137956784 -89567794 + L1ME LINE L1 5427 5711 -459 1586 110 5 0 chr3 137957215 137957433 -89567145 + AluSq SINE Alu 1 219 -94 736 111 0 46 chr3 137957433 137957541 -89567037 + AluSg/x SINE Alu 186 288 -22 23 33 0 0 chr3 137957608 137957638 -89566940 + AT_rich Low_complexity Low_complexity 1 30 0 227 268 179 8 chr3 137957845 137957968 -89566610 + MIR SINE MIR 106 249 -13 1187 267 120 54 chr3 137958298 137958855 -89565723 + L2 LINE L2 2555 3159 -154 2142 73 44 0 chr3 137958855 137959127 -89565451 - AluSp SINE Alu -25 288 5 1187 267 120 54 chr3 137959127 137959293 -89565285 + L2 LINE L2 3159 3313 0 22 56 0 0 chr3 137959537 137959573 -89565005 + AT_rich Low_complexity Low_complexity 1 36 0 1920 154 52 9 chr3 137959576 137959920 -89564658 - MER47A DNA MER2_type 0 366 8 236 280 136 38 chr3 137959920 137960052 -89564526 + L2 LINE L2 3165 3309 -4 1165 132 24 40 chr3 137960827 137961077 -89563501 + Tigger2 DNA MER2_type 2 247 -2471 1767 95 0 57 chr3 137961077 137961339 -89563239 - AluSx SINE Alu -10 302 56 1517 234 34 30 chr3 137961347 137961941 -89562637 + L1MC4a LINE L1 3210 3805 -2341 1372 125 33 8 chr3 137961942 137962182 -89562396 + MSTA-int LTR MaLR 1405 1650 -1 2324 142 43 17 chr3 137962185 137962600 -89561978 + MSTA LTR MaLR 3 428 0 310 283 90 92 chr3 137962611 137962953 -89561625 + L1MC4a LINE L1 4672 5014 -1132 2344 85 3 44 chr3 137962953 137963269 -89561309 + AluSp SINE Alu 1 303 -10 310 283 90 92 chr3 137963269 137963350 -89561228 + L1MC4a LINE L1 5014 5094 -1052 222 0 51 26 chr3 137963489 137963528 -89561050 + (CAAAAA)n Simple_repeat Simple_repeat 3 42 0 485 116 14 159 chr3 137963589 137963727 -89560851 - L1MB8 LINE L1 -144 6034 5917 1357 246 124 53 chr3 137963729 137964462 -89560116 + L1MC4a LINE L1 5385 6169 -1639 2268 121 3 0 chr3 137964672 137964977 -89559601 + AluSx SINE Alu 1 306 -6 1225 219 0 30 chr3 137965080 137965345 -89559233 - AluJo SINE Alu -12 300 44 714 273 36 6 chr3 137965625 137965790 -89558788 - MIR SINE MIR -88 174 5 24 0 0 0 chr3 137966532 137966556 -89558022 + AT_rich Low_complexity Low_complexity 1 24 0 2440 61 3 10 chr3 137967527 137967837 -89556741 + AluY SINE Alu 3 310 -1 2165 108 0 38 chr3 137968032 137968174 -89556404 + AluSc SINE Alu 1 147 -162 2421 73 3 0 chr3 137968174 137968477 -89556101 + AluY SINE Alu 1 304 -7 2165 108 0 38 chr3 137968477 137968648 -89555930 + AluSc SINE Alu 147 302 -7 2165 126 7 7 chr3 137968728 137969037 -89555541 + AluSx SINE Alu 3 311 -1 1088 229 36 97 chr3 137969415 137969991 -89554587 + MER34 LTR ERV1 2 542 0 2472 72 0 0 chr3 137970550 137970856 -89553722 + AluSc SINE Alu 1 306 -3 349 274 47 0 chr3 137970865 137970971 -89553607 + L1M3b LINE L1 5 115 -6166 2282 106 7 0 chr3 137970971 137971273 -89553305 + AluSq SINE Alu 2 305 -8 2091 136 3 7 chr3 137971275 137971570 -89553008 + AluSq SINE Alu 1 294 -19 2213 255 21 37 chr3 137971603 137972253 -89552325 + L1M3b LINE L1 101 740 -5541 * 2970 239 32 52 chr3 137972247 137972394 -89552184 + L1M3b LINE L1 629 777 -5504 879 201 25 0 chr3 137972394 137972553 -89552025 - FRAM SINE Alu 0 166 4 2970 239 32 52 chr3 137972553 137973333 -89551245 + L1M3b LINE L1 777 1538 -4743 445 182 59 0 chr3 137973313 137973496 -89551082 + L1MA7 LINE L1 5981 6280 -11 * 1237 229 47 71 chr3 137974742 137975192 -89549386 + MLT1J LTR MaLR 73 511 0 2682 193 59 5 chr3 137975229 137975826 -89548752 + MER82 DNA MER2_type 23 651 -2 234 0 0 0 chr3 137976590 137976616 -89547962 + (TA)n Simple_repeat Simple_repeat 2 27 0 2497 52 0 7 chr3 137976625 137976931 -89547647 + AluY SINE Alu 2 305 -6 2093 106 0 0 chr3 137977485 137977758 -89546820 + AluSx SINE Alu 1 273 -39 702 236 68 0 chr3 137977871 137978019 -89546559 - MER58A DNA MER1_type 0 158 1 21 0 0 0 chr3 137978189 137978210 -89546368 + AT_rich Low_complexity Low_complexity 1 21 0 700 193 290 0 chr3 137978315 137978491 -89546087 + Tigger7 DNA MER2_type 2 228 -2259 610 143 71 0 chr3 137978506 137978604 -89545974 + Tigger7 DNA MER2_type 2382 2486 -1 534 200 10 0 chr3 137978668 137978768 -89545810 + Tigger7 DNA MER2_type 2386 2486 -1 2160 101 0 4 chr3 137978825 137979101 -89545477 - AluSx SINE Alu -37 275 1 684 214 17 56 chr3 137979471 137979515 -89545063 - MER5B DNA MER1_type -1 177 133 2856 7 0 0 chr3 137979515 137979824 -89544754 - AluYb8 SINE Alu -9 309 1 684 214 17 56 chr3 137979824 137979957 -89544621 - MER5B DNA MER1_type -45 133 7 1764 161 7 14 chr3 137980240 137980531 -89544047 - AluJo SINE Alu -23 289 1 1860 169 3 10 chr3 137980643 137980957 -89543621 + AluJb SINE Alu 1 312 0 21 107 0 0 chr3 137981002 137981086 -89543492 + AT_rich Low_complexity Low_complexity 1 84 0 21 0 0 0 chr3 137981570 137981591 -89542987 + AT_rich Low_complexity Low_complexity 1 21 0 856 238 45 56 chr3 137981727 137982105 -89542473 + L1ME2 LINE L1 5789 6162 -2 297 0 0 0 chr3 137982150 137982183 -89542395 + (CA)n Simple_repeat Simple_repeat 2 34 0 406 208 52 0 chr3 137982184 137982280 -89542298 - Tigger2 DNA MER2_type -1 2717 2617 2395 82 0 0 chr3 137982280 137982583 -89541995 + AluY SINE Alu 9 311 0 9487 126 97 57 chr3 137982583 137984063 -89540515 - Tigger2 DNA MER2_type -247 2471 1051 270 95 0 0 chr3 137984063 137984105 -89540473 + (TG)n Simple_repeat Simple_repeat 1 42 0 9487 126 97 57 chr3 137984105 137984133 -89540445 - Tigger2 DNA MER2_type -1667 1051 1026 1625 179 3 25 chr3 137984133 137984283 -89540295 - AluJb SINE Alu -32 280 137 2298 96 0 0 chr3 137984283 137984574 -89540004 - AluSx SINE Alu -21 291 1 1625 179 3 25 chr3 137984574 137984708 -89539870 - AluJb SINE Alu -175 137 2 9487 126 97 57 chr3 137984708 137985152 -89539426 - Tigger2 DNA MER2_type -1692 1026 441 547 219 18 0 chr3 137985286 137985400 -89539178 + MIR SINE MIR 126 241 -21 31 0 0 0 chr3 137985591 137985622 -89538956 + AT_rich Low_complexity Low_complexity 1 31 0 1712 129 8 4 chr3 137985813 137986053 -89538525 + AluSx SINE Alu 1 241 -71 243 0 0 0 chr3 137986053 137986081 -89538497 + LTR2B LTR ERV1 1 28 -462 3506 96 8 10 chr3 137986081 137986569 -89538009 + LTR2B LTR ERV1 4 490 0 420 102 0 0 chr3 137986570 137986629 -89537949 + AluSx SINE Alu 239 297 -15 251 326 12 0 chr3 137986650 137986736 -89537842 - L1MEd LINE L1 -5489 1041 955 2276 106 0 3 chr3 137986890 137987192 -89537386 - AluSx SINE Alu -11 301 1 26 50 0 0 chr3 137987387 137987427 -89537151 + AT_rich Low_complexity Low_complexity 1 40 0 1751 174 40 0 chr3 137987629 137987928 -89536650 + AluJb SINE Alu 1 311 -1 562 234 110 7 chr3 137988175 137988320 -89536258 - MER5B DNA MER1_type -16 162 3 1014 47 0 23 chr3 137988326 137988454 -89536124 + AluSp SINE Alu 1 125 -188 2097 99 0 11 chr3 137988475 137988782 -89535796 + AluSg SINE Alu 1 304 0 282 179 75 0 chr3 137989096 137989163 -89535415 - MLT1A1 LTR MaLR 0 365 294 2099 125 7 0 chr3 137989166 137989461 -89535117 + AluSx SINE Alu 1 297 -15 1111 231 49 49 chr3 137989474 137989544 -89535034 - L1MEd LINE L1 -6190 350 281 190 0 67 0 chr3 137989544 137989574 -89535004 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1111 231 49 49 chr3 137989574 137989853 -89534725 - L1MEd LINE L1 -6258 282 1 269 244 84 25 chr3 137989891 137990010 -89534568 + LTR16A1 LTR ERVL 19 144 -313 301 213 0 27 chr3 137990066 137990141 -89534437 + LTR16A1 LTR ERVL 251 323 -134 233 274 0 0 chr3 137990329 137990380 -89534198 + MIR SINE MIR 97 147 -61 24 0 0 0 chr3 137990884 137990908 -89533670 + AT_rich Low_complexity Low_complexity 1 24 0 1870 124 8 4 chr3 137990926 137991193 -89533385 + AluSx SINE Alu 33 300 -12 1913 106 44 34 chr3 137991195 137991488 -89533090 + AluSg SINE Alu 2 297 -13 2020 128 3 3 chr3 137991671 137991977 -89532601 + AluSq SINE Alu 3 308 0 458 172 108 0 chr3 137991984 137992077 -89532501 - Tigger7 DNA MER2_type -630 103 1 796 201 6 49 chr3 137992168 137992332 -89532246 - AluJb SINE Alu -18 294 138 332 302 24 16 chr3 137992992 137993118 -89531460 + L2 LINE L2 3184 3310 -3 303 260 67 19 chr3 137993352 137993456 -89531122 + MIR SINE MIR 119 227 -35 2448 167 92 33 chr3 137993592 137994054 -89530524 - Charlie1 DNA MER1_type -9 2752 2242 2389 102 0 0 chr3 137994054 137994357 -89530221 - AluSx SINE Alu -9 303 1 2448 167 92 33 chr3 137994357 137994528 -89530050 - Charlie1 DNA MER1_type -519 2242 2082 234 200 0 0 chr3 137994530 137994580 -89529998 - Charlie1 DNA MER1_type -2614 147 98 347 231 19 46 chr3 137994580 137994688 -89529890 + L1MD2 LINE L1 6241 6345 -14 410 206 200 18 chr3 137994808 137994973 -89529605 - L1MDa LINE L1 -4472 2068 1874 181 222 63 16 chr3 137995250 137995313 -89529265 - MIR SINE MIR -120 142 77 2895 192 59 103 chr3 137996033 137996241 -89528337 + L1M3 LINE L1 4313 4528 -1655 1502 92 8 88 chr3 137996241 137996508 -89528070 - AluSg SINE Alu 0 313 66 2182 107 0 13 chr3 137996514 137996823 -89527755 - AluSq SINE Alu -8 305 1 527 105 0 0 chr3 137996824 137996900 -89527678 - AluSg SINE Alu -233 76 1 2895 192 59 103 chr3 137996900 137996928 -89527650 + L1M3 LINE L1 4533 4561 -1622 2354 84 0 16 chr3 137996928 137997238 -89527340 - AluSq SINE Alu -8 305 1 2895 192 59 103 chr3 137997238 137997890 -89526688 + L1M3 LINE L1 4561 5240 -943 2125 121 13 10 chr3 137997890 137998195 -89526383 + AluSq SINE Alu 1 306 -7 2895 192 59 103 chr3 137998195 137998320 -89526258 + L1M3 LINE L1 5240 5369 -814 2051 63 4 12 chr3 137998320 137998573 -89526005 + AluSp SINE Alu 63 313 0 2895 192 59 103 chr3 137998573 137998821 -89525757 + L1M3 LINE L1 5369 5615 -568 302 128 21 0 chr3 137998821 137998868 -89525710 + FLAM SINE Alu 76 123 -10 3538 133 4 4 chr3 137998919 137999444 -89525134 - MER1A DNA MER1_type 0 527 3 2403 97 0 7 chr3 137999729 138000038 -89524540 + AluSc SINE Alu 1 307 -2 269 180 33 148 chr3 138000143 138000265 -89524313 - MLT1H LTR MaLR -243 306 199 1830 162 7 7 chr3 138000322 138000618 -89523960 + AluSx SINE Alu 1 296 -16 450 222 59 30 chr3 138000793 138000928 -89523650 - FLAM_C SINE Alu 0 143 5 1622 115 0 5 chr3 138001024 138001262 -89523316 - AluSg/x SINE Alu 0 302 66 25 0 0 0 chr3 138001269 138001294 -89523284 + AT_rich Low_complexity Low_complexity 1 25 0 252 0 0 0 chr3 138001457 138001485 -89523093 + (TG)n Simple_repeat Simple_repeat 2 29 0 1402 116 0 5 chr3 138001496 138001686 -89522892 - AluSg/x SINE Alu -14 298 110 21 36 0 0 chr3 138001803 138001831 -89522747 + AT_rich Low_complexity Low_complexity 1 28 0 1824 112 94 0 chr3 138001877 138002144 -89522434 - AluSx SINE Alu -20 292 1 903 159 51 5 chr3 138002267 138002462 -89522116 - Charlie5 DNA MER1_type -163 2449 2246 503 181 53 23 chr3 138002459 138002511 -89522067 - Charlie5 DNA MER1_type -2487 137 88 * 1606 169 14 27 chr3 138002511 138002806 -89521772 + AluJo SINE Alu 4 294 -18 503 181 53 23 chr3 138002806 138002886 -89521692 - Charlie5 DNA MER1_type -2536 88 1 1767 190 7 7 chr3 138003585 138003895 -89520683 - AluJo SINE Alu -2 310 1 1956 169 7 0 chr3 138003915 138004217 -89520361 - AluJb SINE Alu -8 304 1 215 284 45 0 chr3 138004396 138004463 -89520115 - L3 LINE CR1 -3 1574 1505 302 155 0 5 chr3 138004976 138005074 -89519504 + MER53 DNA DNA 1 146 -43 1968 142 12 121 chr3 138005074 138005588 -89518990 - L1MA7 LINE L1 -7 6284 5827 519 161 9 33 chr3 138006172 138006297 -89518281 + L1PA14 LINE L1 5845 5961 -198 211 213 0 0 chr3 138006441 138006488 -89518090 - L2 LINE L2 -2 3311 3265 279 0 0 0 chr3 138006652 138006683 -89517895 + (CA)n Simple_repeat Simple_repeat 2 32 0 1160 158 0 0 chr3 138007258 138007448 -89517130 + Tigger4(Zombi) DNA MER2_type 30 219 -2512 * 1653 128 57 4 chr3 138007446 138007727 -89516851 + Tigger4(Zombi) DNA MER2_type 2435 2730 -1 349 193 23 11 chr3 138007729 138007817 -89516761 - MER103 DNA DNA -76 90 2 416 340 66 25 chr3 138008420 138008617 -89515961 + L1MEd LINE L1 589 793 -5326 216 0 0 0 chr3 138008773 138008797 -89515781 + (A)n Simple_repeat Simple_repeat 1 24 0 659 279 101 33 chr3 138008820 138009426 -89515152 + L1MEd LINE L1 2202 2765 -3364 857 135 0 8 chr3 138009426 138009559 -89515019 + FLAM_C SINE Alu 1 132 -1 225 0 0 0 chr3 138009559 138009584 -89514994 + (TG)n Simple_repeat Simple_repeat 2 26 0 659 279 101 33 chr3 138009584 138009653 -89514925 + L1MEd LINE L1 2765 2828 -3301 2007 125 34 0 chr3 138009653 138009949 -89514629 - AluSx SINE Alu -6 306 1 659 279 101 33 chr3 138009949 138010313 -89514265 + L1MEd LINE L1 2828 3395 -2734 230 208 69 14 chr3 138010400 138010472 -89514106 + L1MEd LINE L1 3416 3491 -2638 774 165 0 0 chr3 138010691 138010812 -89513766 - FLAM_A SINE Alu -8 125 5 303 244 333 6 chr3 138010894 138011062 -89513516 - MIR SINE MIR 0 262 40 752 224 94 5 chr3 138011454 138011646 -89512932 + MER58A DNA MER1_type 1 209 -15 2505 78 0 3 chr3 138012434 138012741 -89511837 + AluSq SINE Alu 2 307 -6 2093 106 0 0 chr3 138013295 138013568 -89511010 + AluSx SINE Alu 1 273 -39 702 236 68 0 chr3 138013682 138013830 -89510748 - MER58A DNA MER1_type 0 158 1 211 299 75 15 chr3 138013832 138013899 -89510679 + L2 LINE L2 3150 3220 -52 21 0 0 0 chr3 138014000 138014021 -89510557 + AT_rich Low_complexity Low_complexity 1 21 0 700 193 290 0 chr3 138014126 138014302 -89510276 + Tigger7 DNA MER2_type 2 228 -2259 610 143 71 0 chr3 138014317 138014415 -89510163 + Tigger7 DNA MER2_type 2386 2490 -1 534 200 10 0 chr3 138014479 138014579 -89509999 + Tigger7 DNA MER2_type 2386 2486 -1 2160 101 0 4 chr3 138014636 138014912 -89509666 - AluSx SINE Alu -37 275 1 185 188 42 42 chr3 138015282 138015330 -89509248 + MER5B DNA MER1_type 2 49 -129 2938 6 0 0 chr3 138015334 138015651 -89508927 - AluYb8 SINE Alu 0 318 2 234 0 0 0 chr3 138015660 138015686 -89508892 + (TA)n Simple_repeat Simple_repeat 2 27 0 2682 193 59 5 chr3 138016450 138017047 -89507531 - MER82 DNA MER2_type -2 651 23 1237 229 47 71 chr3 138017084 138017534 -89507044 - MLT1J LTR MaLR 0 511 73 483 176 59 0 chr3 138018780 138018963 -89505615 - L1MA7 LINE L1 -11 6280 5981 * 3039 233 33 52 chr3 138018943 138019722 -89504856 - L1M3b LINE L1 -4743 1538 777 879 201 25 0 chr3 138019722 138019881 -89504697 + FRAM SINE Alu 4 166 0 3039 233 33 52 chr3 138019881 138020028 -89504550 - L1M3b LINE L1 -5504 777 629 2240 252 21 37 chr3 138020022 138020672 -89503906 - L1M3b LINE L1 -5541 740 101 * 2091 136 3 7 chr3 138020704 138020999 -89503579 - AluSq SINE Alu -19 294 1 2282 106 7 0 chr3 138021001 138021303 -89503275 - AluSq SINE Alu -8 305 2 349 274 47 0 chr3 138021303 138021409 -89503169 - L1M3b LINE L1 -6166 115 5 2464 75 0 0 chr3 138021418 138021724 -89502854 - AluSc SINE Alu -3 306 1 774 165 0 0 chr3 138022471 138022592 -89501986 + FLAM_A SINE Alu 5 125 -8 230 208 69 14 chr3 138022811 138022883 -89501695 - L1M4 LINE L1 -2638 3508 3433 410 266 102 44 chr3 138022970 138023334 -89501244 - L1M4 LINE L1 -2734 3412 3018 2007 125 34 0 chr3 138023334 138023630 -89500948 + AluSx SINE Alu 1 306 -6 410 266 102 44 chr3 138023630 138023697 -89500881 - L1M4 LINE L1 -3128 3018 2956 225 0 0 0 chr3 138023699 138023724 -89500854 + (CA)n Simple_repeat Simple_repeat 2 26 0 871 128 0 8 chr3 138023724 138023857 -89500721 - FLAM_C SINE Alu -1 132 1 31 0 0 0 chr3 138024048 138024079 -89500499 + AT_rich Low_complexity Low_complexity 1 31 0 635 269 68 43 chr3 138024270 138024407 -89500171 - MIR SINE MIR -21 241 94 1891 123 3 7 chr3 138024407 138024691 -89499887 + AluSx SINE Alu 23 305 -7 635 269 68 43 chr3 138024691 138024787 -89499791 - MIR SINE MIR -168 94 2 2314 89 3 3 chr3 138024834 138025137 -89499441 - AluSx SINE Alu -8 304 2 285 289 82 52 chr3 138025146 138025340 -89499238 + L2 LINE L2 3113 3312 -1 21 0 0 0 chr3 138027305 138027326 -89497252 + AT_rich Low_complexity Low_complexity 1 21 0 1906 136 35 3 chr3 138027888 138028174 -89496404 - AluSx SINE Alu -17 295 1 2153 117 3 0 chr3 138028247 138028545 -89496033 - AluSx SINE Alu -13 299 1 222 292 123 0 chr3 138028740 138028805 -89495773 + MIR SINE MIR 34 106 -156 229 228 53 0 chr3 138028866 138028923 -89495655 + MIR SINE MIR 182 241 -21 664 348 96 33 chr3 138029002 138029251 -89495327 + L2 LINE L2 2420 2652 -662 1558 106 48 109 chr3 138029251 138029563 -89495015 - AluSq SINE Alu -20 293 1 664 348 96 33 chr3 138029563 138029825 -89494753 + L2 LINE L2 2652 2963 -351 809 244 0 0 chr3 138029831 138030003 -89494575 - AluSg/x SINE Alu -1 309 138 2029 116 0 41 chr3 138030090 138030409 -89494169 - AluSx SINE Alu -6 306 1 2256 89 38 7 chr3 138031071 138031364 -89493214 + AluSx SINE Alu 1 302 -10 436 233 68 0 chr3 138031853 138031956 -89492622 + MIR SINE MIR 42 151 -57 180 259 52 35 chr3 138031956 138032014 -89492564 + L2 LINE L2 3210 3268 -4 25 0 0 0 chr3 138032179 138032204 -89492374 + AT_rich Low_complexity Low_complexity 1 25 0 246 226 108 54 chr3 138033548 138033641 -89490937 + L2 LINE L2 3145 3242 -30 2032 98 53 39 chr3 138034600 138034957 -89489621 + L1PA16 LINE L1 5805 6166 0 1893 159 7 3 chr3 138035310 138035606 -89488972 + AluJo SINE Alu 3 299 -13 21 36 0 0 chr3 138035753 138035781 -89488797 + AT_rich Low_complexity Low_complexity 1 28 0 2165 230 130 57 chr3 138035784 138036511 -89488067 - HAL1 LINE L1 -105 2402 1582 2406 91 3 0 chr3 138036511 138036818 -89487760 - AluSq SINE Alu -5 308 1 2165 230 130 57 chr3 138036818 138037083 -89487495 - HAL1 LINE L1 -925 1582 1338 870 273 54 34 chr3 138037092 138037630 -89486948 + L1M4 LINE L1 2539 3087 -3059 1868 158 31 0 chr3 138037631 138037923 -89486655 + AluSx SINE Alu 1 301 -11 278 227 92 43 chr3 138037986 138038076 -89486502 + L1M LINE L1 5258 5342 -822 2140 62 99 0 chr3 138038076 138038348 -89486230 + AluY SINE Alu 1 299 -12 278 227 92 43 chr3 138038348 138038420 -89486158 + L1M LINE L1 5342 5428 -736 2144 121 0 0 chr3 138038438 138038745 -89485833 + AluSg SINE Alu 1 307 0 1721 174 10 29 chr3 138039076 138039387 -89485191 + AluJo SINE Alu 1 305 -7 753 181 161 39 chr3 138039593 138039696 -89484882 - Tigger7 DNA MER2_type -503 230 141 1937 113 14 11 chr3 138039696 138040003 -89484575 + AluSq SINE Alu 1 308 0 753 181 161 39 chr3 138040003 138040103 -89484475 - Tigger7 DNA MER2_type -592 141 1 918 167 0 49 chr3 138040194 138040356 -89484222 - AluJb SINE Alu -18 294 141 21 0 0 0 chr3 138041715 138041736 -89482842 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr3 138042175 138042200 -89482378 + (A)n Simple_repeat Simple_repeat 1 25 0 2129 130 3 3 chr3 138043208 138043509 -89481069 + AluSx SINE Alu 2 302 -10 3652 164 10 29 chr3 138043802 138044179 -89480399 + MER21B LTR ERV1 129 489 -374 1738 169 7 7 chr3 138044179 138044474 -89480104 + AluJo SINE Alu 3 297 -15 3652 164 10 29 chr3 138044474 138044778 -89479800 + MER21B LTR ERV1 489 797 -66 2366 76 0 3 chr3 138044794 138045096 -89479482 - AluSg SINE Alu -9 301 1 290 287 40 30 chr3 138045105 138045240 -89479338 - MIR SINE MIR -67 141 5 857 200 24 0 chr3 138045866 138046036 -89478542 + AluJo SINE Alu 75 248 -64 680 154 0 65 chr3 138046040 138046202 -89478376 + AluJb SINE Alu 168 321 0 2250 132 0 0 chr3 138046288 138046592 -89477986 + AluSx SINE Alu 1 304 -8 1767 190 7 7 chr3 138046612 138046922 -89477656 + AluJo SINE Alu 1 310 -2 384 218 11 0 chr3 138047614 138047701 -89476877 + MER3 DNA MER1_type 41 128 -81 1577 167 14 28 chr3 138047701 138047988 -89476590 - AluJb SINE Alu -18 294 12 1626 255 94 22 chr3 138048630 138049511 -89475067 - L1ME2 LINE L1 -11 6153 5191 13945 151 25 33 chr3 138049518 138050215 -89474363 - L1MA3 LINE L1 0 7724 7023 216 0 0 0 chr3 138050215 138050239 -89474339 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2115 108 7 0 chr3 138050239 138050518 -89474060 - AluSg SINE Alu -29 281 1 13945 151 25 33 chr3 138050518 138052942 -89471636 - L1MA3 LINE L1 -700 7024 4646 2125 136 0 0 chr3 138052942 138053237 -89471341 + AluSx SINE Alu 1 295 -17 13945 151 25 33 chr3 138053237 138054534 -89470044 - L1MA3 LINE L1 -3078 4646 3340 1995 127 31 3 chr3 138054534 138054825 -89469753 - AluSx SINE Alu -13 299 1 4793 106 81 15 chr3 138054825 138055718 -89468860 - L1MA3 LINE L1 -4320 3245 2294 2177 102 7 10 chr3 138055718 138056022 -89468556 - AluSc SINE Alu -1 308 6 624 251 0 37 chr3 138056057 138056248 -89468330 + L1ME1 LINE L1 5978 6161 -5 21 0 0 0 chr3 138056614 138056635 -89467943 + AT_rich Low_complexity Low_complexity 1 21 0 717 281 55 0 chr3 138057401 138057600 -89466978 + MIR SINE MIR 42 251 -11 1737 60 0 0 chr3 138057733 138057951 -89466627 - L1PA5 LINE L1 -1 6153 5936 11987 97 15 1 chr3 138057951 138059782 -89464796 - L1P LINE L1 -4296 1850 2 180 250 0 0 chr3 138059803 138059867 -89464711 + T-rich Low_complexity Low_complexity 1 64 0 38271 38 2 2 chr3 138060050 138065755 -89458823 + L1PA3 LINE L1 445 6152 -3 207 0 0 0 chr3 138065758 138065781 -89458797 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 609 174 98 23 chr3 138065810 138065942 -89458636 + MIR SINE MIR 48 189 -73 607 222 0 0 chr3 138066128 138066245 -89458333 + FLAM_C SINE Alu 1 117 -16 203 282 26 51 chr3 138066610 138066688 -89457890 - L2 LINE L2 -4 3268 3193 2585 62 0 0 chr3 138066729 138067038 -89457540 - AluY SINE Alu -2 309 1 281 241 0 0 chr3 138067970 138068028 -89456550 + L2 LINE L2 3215 3272 0 554 251 82 29 chr3 138068345 138068624 -89455954 + L1MC4a LINE L1 5333 5626 -2182 2261 117 0 0 chr3 138068728 138069035 -89455543 + AluSc SINE Alu 1 307 -2 363 184 64 0 chr3 138069037 138069146 -89455432 + L1MC4a LINE L1 5870 5985 -1823 1154 169 52 30 chr3 138069324 138069555 -89455023 + MER46A DNA MER2_type 1 236 0 346 339 12 33 chr3 138069578 138069823 -89454755 + L1MEc LINE L1 81 320 -6076 301 349 56 28 chr3 138070106 138070321 -89454257 + L1MEc LINE L1 579 799 -5597 3098 188 82 16 chr3 138070413 138070450 -89454128 + Charlie5 DNA MER1_type 1012 1045 -1579 2064 140 39 22 chr3 138070450 138070808 -89453770 + THE1B LTR MaLR 1 364 0 3098 188 82 16 chr3 138070808 138071600 -89452978 + Charlie5 DNA MER1_type 1045 1896 -728 755 136 0 53 chr3 138071601 138071733 -89452845 + FLAM_C SINE Alu 1 125 -18 1539 160 50 50 chr3 138071752 138071927 -89452651 + Charlie5 DNA MER1_type 1891 2065 -559 1710 145 111 0 chr3 138071927 138072251 -89452327 + MER46B DNA MER2_type 2 236 0 1539 160 50 50 chr3 138072251 138072431 -89452147 + Charlie5 DNA MER1_type 2065 2249 -375 1975 151 0 16 chr3 138072431 138072743 -89451835 - AluJo SINE Alu 0 312 6 1539 160 50 50 chr3 138072743 138072822 -89451756 + Charlie5 DNA MER1_type 2248 2326 -298 4044 122 63 72 chr3 138072822 138073678 -89450900 + Tigger1 DNA MER2_type 1 848 -1570 418 76 30 0 chr3 138073684 138073750 -89450828 + Alu SINE Alu 244 311 0 2420 77 3 0 chr3 138073765 138074064 -89450514 + AluSp SINE Alu 1 300 -13 301 317 75 53 chr3 138074428 138074655 -89449923 - L2 LINE L2 -1220 2094 1863 1800 161 30 3 chr3 138075115 138075413 -89449165 + AluJo SINE Alu 1 306 -6 1576 93 9 9 chr3 138076346 138076561 -89448017 + AluSg/x SINE Alu 87 301 -11 22 0 0 0 chr3 138077191 138077213 -89447365 + AT_rich Low_complexity Low_complexity 1 22 0 1601 95 193 0 chr3 138077380 138077645 -89446933 + AluSx SINE Alu 2 312 0 526 252 56 135 chr3 138077855 138077984 -89446594 - MIR SINE MIR -16 246 147 1762 140 0 78 chr3 138077984 138078291 -89446287 - AluJb SINE Alu -29 283 1 526 252 56 135 chr3 138078291 138078427 -89446151 - MIR SINE MIR -115 147 2 2150 94 0 55 chr3 138078816 138079151 -89445427 + AluSq SINE Alu 1 313 0 1195 133 0 0 chr3 138080298 138080464 -89444114 + AluSx SINE Alu 1 166 -146 1926 171 7 0 chr3 138081084 138081383 -89443195 - AluJb SINE Alu -11 301 1 215 284 45 0 chr3 138081562 138081629 -89442949 - L3 LINE CR1 -3 1574 1505 302 155 0 5 chr3 138082138 138082236 -89442342 + MER53 DNA DNA 1 146 -43 1968 142 12 121 chr3 138082236 138082750 -89441828 - L1MA7 LINE L1 -7 6284 5827 519 113 0 0 chr3 138083377 138083457 -89441121 + L1PA14 LINE L1 5882 5961 -200 211 213 0 0 chr3 138083601 138083648 -89440930 - L2 LINE L2 -2 3311 3265 297 0 0 0 chr3 138083812 138083845 -89440733 + (CA)n Simple_repeat Simple_repeat 2 34 0 1160 158 0 0 chr3 138084420 138084610 -89439968 + Tigger4(Zombi) DNA MER2_type 30 219 -2512 * 1653 128 57 4 chr3 138084608 138084889 -89439689 + Tigger4(Zombi) DNA MER2_type 2435 2730 -1 349 193 23 11 chr3 138084891 138084979 -89439599 - MER103 DNA DNA -76 90 2 400 342 67 26 chr3 138085585 138085778 -89438800 + L1MEd LINE L1 593 793 -5326 207 0 0 0 chr3 138085934 138085957 -89438621 + (A)n Simple_repeat Simple_repeat 1 23 0 659 279 101 33 chr3 138085980 138086586 -89437992 + L1MEd LINE L1 2202 2765 -3364 857 135 0 8 chr3 138086586 138086719 -89437859 + FLAM_C SINE Alu 1 132 -1 225 0 0 0 chr3 138086719 138086744 -89437834 + (TG)n Simple_repeat Simple_repeat 2 26 0 659 279 101 33 chr3 138086744 138086813 -89437765 + L1MEd LINE L1 2765 2828 -3301 2007 125 34 0 chr3 138086813 138087109 -89437469 - AluSx SINE Alu -6 306 1 659 279 101 33 chr3 138087109 138087473 -89437105 + L1MEd LINE L1 2828 3395 -2734 230 208 69 14 chr3 138087560 138087632 -89436946 + L1MEd LINE L1 3416 3491 -2638 774 165 0 0 chr3 138087851 138087972 -89436606 - FLAM_A SINE Alu -8 125 5 303 244 333 6 chr3 138088054 138088222 -89436356 - MIR SINE MIR 0 262 40 780 214 94 5 chr3 138088614 138088806 -89435772 + MER58A DNA MER1_type 1 209 -15 2411 84 0 3 chr3 138089595 138089892 -89434686 + AluSq SINE Alu 2 297 -16 21 0 0 0 chr3 138090483 138090504 -89434074 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr3 138090941 138090966 -89433612 + (A)n Simple_repeat Simple_repeat 1 25 0 2129 130 3 3 chr3 138091974 138092275 -89432303 + AluSx SINE Alu 2 302 -10 268 330 55 0 chr3 138092988 138093079 -89431499 + L2 LINE L2 3169 3264 -8 2021 108 7 21 chr3 138093623 138093930 -89430648 + AluSc SINE Alu 1 303 0 1885 151 30 20 chr3 138093936 138094241 -89430337 + AluSx SINE Alu 1 308 -4 306 50 0 0 chr3 138094241 138094281 -89430297 + (GA)n Simple_repeat Simple_repeat 1 40 0 264 122 0 0 chr3 138094276 138094317 -89430261 + (GAAAA)n Simple_repeat Simple_repeat 3 43 0 * 22 80 0 0 chr3 138094396 138094446 -89430132 + AT_rich Low_complexity Low_complexity 1 50 0 27 29 0 0 chr3 138094617 138094651 -89429927 + AT_rich Low_complexity Low_complexity 1 34 0 542 283 82 40 chr3 138097795 138098099 -89426479 - L2 LINE L2 0 3313 2997 1806 149 14 10 chr3 138098126 138098415 -89426163 + AluSx SINE Alu 1 290 -22 2247 113 20 0 chr3 138098425 138098726 -89425852 + AluSx SINE Alu 1 307 -5 939 257 96 11 chr3 138098765 138099131 -89425447 + L1ME LINE L1 62 458 -5612 1366 163 80 35 chr3 138099140 138099428 -89425150 + MER1B DNA MER1_type 1 301 -38 1719 167 13 39 chr3 138099992 138100298 -89424280 - AluJo SINE Alu -14 298 1 22 35 0 0 chr3 138100336 138100365 -89424213 + AT_rich Low_complexity Low_complexity 1 29 0 2340 95 0 0 chr3 138100374 138100669 -89423909 + AluSq SINE Alu 1 295 -18 23 101 0 0 chr3 138100720 138100799 -89423779 + AT_rich Low_complexity Low_complexity 1 79 0 34 42 0 0 chr3 138102285 138102333 -89422245 + AT_rich Low_complexity Low_complexity 1 48 0 2285 99 3 0 chr3 138102345 138102638 -89421940 + AluSp SINE Alu 2 295 -18 2346 77 0 19 chr3 138102916 138103227 -89421351 + AluY SINE Alu 1 305 -6 1029 94 0 0 chr3 138103411 138103564 -89421014 + AluSg/x SINE Alu 155 307 0 1782 152 14 27 chr3 138103895 138104192 -89420386 + AluJo SINE Alu 1 293 -19 1253 237 58 43 chr3 138104198 138104730 -89419848 - L1M4c LINE L1 -4771 1613 1074 317 173 87 67 chr3 138104732 138104836 -89419742 + AluSc SINE Alu 3 108 -191 22 35 0 0 chr3 138104851 138104880 -89419698 + AT_rich Low_complexity Low_complexity 1 29 0 2358 100 3 7 chr3 138105463 138105772 -89418806 + AluSp SINE Alu 5 312 -1 428 68 0 0 chr3 138106396 138106455 -89418123 + AluSp/q SINE Alu 241 299 -14 1275 180 9 0 chr3 138106464 138106675 -89417903 + AluSg/x SINE Alu 85 297 -15 2392 194 45 8 chr3 138106676 138107212 -89417366 + Tigger2 DNA MER2_type 260 815 -1903 1581 188 24 10 chr3 138207549 138207837 -89316741 + AluJo SINE Alu 7 298 -14 21 0 0 0 chr3 138207932 138207953 -89316625 + AT_rich Low_complexity Low_complexity 1 21 0 2144 115 0 13 chr3 138208016 138208329 -89316249 + AluSx SINE Alu 1 309 -3 350 267 68 80 chr3 138208683 138209009 -89315569 + L1MCa LINE L1 2304 2632 -3794 264 59 0 0 chr3 138209061 138209095 -89315483 + (TA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr3 138209769 138209791 -89314787 + AT_rich Low_complexity Low_complexity 1 22 0 600 290 98 59 chr3 138210765 138211255 -89313323 + MER109 Unknown Unknown 145 653 -1779 26 0 0 0 chr3 138211408 138211434 -89313144 + AT_rich Low_complexity Low_complexity 1 26 0 274 340 62 90 chr3 138211546 138211914 -89312664 + L2 LINE L2 2880 3237 -35 412 127 0 0 chr3 138212379 138212458 -89312120 - AluSp/q SINE Alu 0 313 235 183 208 104 21 chr3 138212764 138212812 -89311766 + L2 LINE L2 3215 3266 -6 195 395 26 26 chr3 138213376 138213528 -89311050 + L2 LINE L2 2703 2854 -460 2226 110 0 10 chr3 138213547 138213856 -89310722 - AluSg SINE Alu 0 310 5 405 363 109 30 chr3 138213899 138214238 -89310340 + L2 LINE L2 2895 3260 -12 296 146 202 0 chr3 138215498 138215587 -89308991 - L1ME3A LINE L1 -73 6097 5991 288 270 157 0 chr3 138215783 138215872 -89308706 - MIR SINE MIR -3 259 157 372 293 69 31 chr3 138216382 138216550 -89308028 - MIR SINE MIR -27 235 60 1996 133 0 20 chr3 138216828 138216984 -89307594 - AluSx SINE Alu -24 288 139 2464 69 13 0 chr3 138216984 138217290 -89307288 - AluSg SINE Alu 0 310 1 1996 133 0 20 chr3 138217290 138217427 -89307151 - AluSx SINE Alu -173 139 1 248 53 26 0 chr3 138217443 138217481 -89307097 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 2350 100 0 3 chr3 138217483 138217794 -89306784 - AluSx SINE Alu 0 312 3 2354 66 3 7 chr3 138218192 138218494 -89306084 - AluY SINE Alu -10 301 1 2278 94 3 0 chr3 138218498 138218807 -89305771 - AluSg SINE Alu 0 310 1 2021 117 17 3 chr3 138218807 138219106 -89305472 - AluSg1 SINE Alu -6 303 1 617 276 27 32 chr3 138219714 138219935 -89304643 - Charlie8 DNA MER1_type -2197 220 1 520 298 73 19 chr3 138221351 138221556 -89303022 - MIR SINE MIR 0 262 47 237 307 13 0 chr3 138222760 138222835 -89301743 + MIR3 SINE MIR 122 197 -11 663 255 39 20 chr3 138224945 138225149 -89299429 + MIR SINE MIR 52 259 -3 188 290 58 43 chr3 138225423 138225492 -89299086 + L2 LINE L2 3167 3236 -36 337 286 11 0 chr3 138225675 138225766 -89298812 - L2 LINE L2 0 3313 3222 455 147 126 0 chr3 138225822 138225917 -89298661 - MIR SINE MIR 0 262 156 405 273 87 31 chr3 138226190 138226391 -89298187 + L1MC/D LINE L1 4951 5139 -982 2177 114 3 3 chr3 138226391 138226690 -89297888 + AluSx SINE Alu 1 299 -13 405 273 87 31 chr3 138226690 138226981 -89297597 + L1MC/D LINE L1 5139 5479 -642 3043 159 45 148 chr3 138227264 138227680 -89296898 - MER21A LTR ERV1 -35 896 635 853 217 0 6 chr3 138227680 138227837 -89296741 + FRAM SINE Alu 1 156 -10 3043 159 45 148 chr3 138227837 138228392 -89296186 - MER21A LTR ERV1 -296 635 25 207 100 0 0 chr3 138228392 138228422 -89296156 + (TATATG)n Simple_repeat Simple_repeat 4 33 0 307 267 48 38 chr3 138228440 138228545 -89296033 + MIR SINE MIR 156 261 -1 452 185 0 0 chr3 138228605 138228686 -89295892 - FLAM_A SINE Alu -15 127 47 28 61 0 0 chr3 138228760 138228809 -89295769 + AT_rich Low_complexity Low_complexity 1 49 0 2033 120 14 3 chr3 138228809 138229092 -89295486 - AluSx SINE Alu -26 286 1 2798 154 36 34 chr3 138229171 138229698 -89294880 - MER68 LTR ERV1 -32 530 3 190 267 0 0 chr3 138229770 138229815 -89294763 + L2 LINE L2 3251 3295 -18 1293 73 14 56 chr3 138231590 138231878 -89292700 - L1PA15 LINE L1 -4 6161 5738 791 188 15 15 chr3 138233295 138233492 -89291086 - L1ME LINE L1 -3245 3712 3516 2402 96 3 0 chr3 138233511 138233823 -89290755 + AluSp SINE Alu 1 313 0 237 114 0 0 chr3 138233848 138233883 -89290695 - Tigger6 DNA MER2_type -1035 48 14 965 202 16 125 chr3 138233949 138234389 -89290189 - L1ME LINE L1 -3459 3498 3107 1071 205 64 4 chr3 138234394 138234628 -89289950 + Tigger7 DNA MER2_type 17 264 -2223 602 152 0 10 chr3 138234629 138234728 -89289850 + Tigger7 DNA MER2_type 2490 2587 0 1355 247 118 37 chr3 138234731 138236016 -89288562 - L1ME LINE L1 -3993 3145 1336 1482 200 34 90 chr3 138236544 138237020 -89287558 - MLT2B1 LTR ERVL -2 518 70 265 246 0 0 chr3 138237084 138237153 -89287425 - L1ME LINE L1 -5935 1012 944 670 198 156 0 chr3 138237174 138237341 -89287237 + MER58A DNA MER1_type 5 197 -27 1740 142 87 17 chr3 138237603 138237891 -89286687 + AluJo SINE Alu 1 308 -4 214 236 122 88 chr3 138238275 138238423 -89286155 - L2 LINE L2 -998 2316 2164 25 0 0 0 chr3 138238555 138238580 -89285998 + AT_rich Low_complexity Low_complexity 1 25 0 449 195 73 0 chr3 138238661 138238784 -89285794 + MER3 DNA MER1_type 37 168 -41 900 155 48 0 chr3 138238786 138238973 -89285605 + MER3 DNA MER1_type 2233 2428 0 352 216 27 9 chr3 138239007 138239118 -89285460 + MER3 DNA MER1_type 2508 2620 0 3608 130 0 20 chr3 138239338 138239876 -89284702 + MER1A DNA MER1_type 1 527 0 1345 146 88 122 chr3 138240779 138241163 -89283415 - MLT1A2 LTR MaLR 0 374 4 6984 56 11 14 chr3 138241431 138243227 -89281351 - L1PA8 LINE L1 0 6172 4376 544 252 91 62 chr3 138243329 138243662 -89280916 + L1M4 LINE L1 2240 2562 -3584 969 204 0 0 chr3 138243662 138243824 -89280754 - FRAM SINE Alu -4 162 1 544 252 91 62 chr3 138243824 138243898 -89280680 + L1M4 LINE L1 2562 2632 -3514 1870 179 0 22 chr3 138243898 138244217 -89280361 + AluJb SINE Alu 1 312 0 544 252 91 62 chr3 138244217 138244464 -89280114 + L1M4 LINE L1 2632 2919 -3227 1793 122 0 4 chr3 138244464 138244711 -89279867 + AluSx SINE Alu 54 299 -13 544 252 91 62 chr3 138244711 138244761 -89279817 + L1M4 LINE L1 2919 2966 -3180 22 35 0 0 chr3 138245038 138245067 -89279511 + AT_rich Low_complexity Low_complexity 1 29 0 297 352 179 7 chr3 138245266 138245567 -89279011 - L2 LINE L2 -470 2844 2492 335 330 68 0 chr3 138246227 138246330 -89278248 + L2 LINE L2 3158 3267 -5 286 339 208 6 chr3 138246388 138246571 -89278007 - L2 LINE L2 -240 3073 2854 1803 176 10 0 chr3 138246587 138246883 -89277695 + AluJo SINE Alu 1 299 -13 333 231 43 34 chr3 138247055 138247172 -89277406 + L2 LINE L2 2032 2149 -1165 959 188 0 6 chr3 138247173 138247343 -89277235 - FRAM SINE Alu -5 171 3 1745 253 55 77 chr3 138247359 138247760 -89276818 + L2 LINE L2 2070 2478 -836 585 0 0 0 chr3 138247760 138247825 -89276753 + (TTCC)n Simple_repeat Simple_repeat 4 68 0 1745 253 55 77 chr3 138247825 138247849 -89276729 + L2 LINE L2 2478 2501 -813 1569 204 17 20 chr3 138247849 138248143 -89276435 - AluJo SINE Alu -18 294 2 1745 253 55 77 chr3 138248143 138248456 -89276122 + L2 LINE L2 2501 2793 -521 380 182 0 0 chr3 138248527 138248593 -89275985 + MER7A DNA MER2_type 23 86 -260 271 211 0 14 chr3 138248655 138248726 -89275852 - L1MA4 LINE L1 -11 6289 6220 1413 98 33 95 chr3 138248728 138249002 -89275576 + MER7A DNA MER2_type 80 336 -10 893 291 64 81 chr3 138249012 138249375 -89275203 + L3 LINE CR1 936 1291 -286 2293 116 0 0 chr3 138249375 138249676 -89274902 - AluSq SINE Alu -12 301 1 893 291 64 81 chr3 138249676 138249793 -89274785 + L3 LINE CR1 1291 1408 -169 412 210 143 0 chr3 138249806 138249925 -89274653 + MER103 DNA DNA 28 163 -3 416 319 37 37 chr3 138252465 138252554 -89272024 - MIR SINE MIR -56 206 118 1874 85 0 92 chr3 138252554 138252847 -89271731 + AluSx SINE Alu 1 266 -46 416 319 37 37 chr3 138252847 138252948 -89271630 - MIR SINE MIR -143 119 16 40966 32 22 2 chr3 138253873 138259898 -89264680 + L1PA3 LINE L1 7 6155 0 25 31 0 0 chr3 138259919 138259951 -89264627 + AT_rich Low_complexity Low_complexity 1 32 0 2240 104 0 13 chr3 138260455 138260762 -89263816 + AluSq SINE Alu 1 303 -10 181 226 107 71 chr3 138261368 138261452 -89263126 + L3 LINE CR1 138 224 -1353 344 268 9 71 chr3 138261872 138261984 -89262594 + L2 LINE L2 3209 3313 0 892 202 75 16 chr3 138263797 138264050 -89260528 + L1ME4a LINE L1 5616 5883 -238 311 233 0 135 chr3 138264669 138264802 -89259776 - L2 LINE L2 0 3313 3199 2562 154 17 2 chr3 138264985 138265407 -89259171 - MSTA LTR MaLR 0 428 1 4724 154 9 8 chr3 138265407 138266212 -89258366 - MSTA-int LTR MaLR 0 1651 846 1274 169 35 35 chr3 138266213 138266468 -89258110 - MSTA LTR MaLR -173 255 1 252 0 0 0 chr3 138266875 138266903 -89257675 + (TA)n Simple_repeat Simple_repeat 1 28 0 553 76 13 0 chr3 138270452 138270531 -89254047 + MADE1 DNA Mariner 1 80 0 331 344 28 37 chr3 138270724 138270942 -89253636 + L2 LINE L2 2454 2669 -645 460 315 122 22 chr3 138271048 138271270 -89253308 - MIR SINE MIR -8 254 11 230 208 83 56 chr3 138271297 138271369 -89253209 - L2 LINE L2 -42 3271 3198 2036 142 3 10 chr3 138272035 138272346 -89252232 + AluSc SINE Alu 1 309 0 2153 113 3 0 chr3 138272583 138272896 -89251682 - AluSx SINE Alu 0 314 1 580 276 72 41 chr3 138272900 138273193 -89251385 - L1MEc LINE L1 -4223 2173 1872 669 323 32 22 chr3 138273206 138273853 -89250725 - L1MEc LINE L1 -4576 1820 1167 2165 262 62 53 chr3 138273966 138275516 -89249062 + L1M4 LINE L1 466 2101 -4724 1780 138 58 0 chr3 138275516 138275777 -89248801 + AluSx SINE Alu 1 276 -36 2165 262 62 53 chr3 138275777 138276454 -89248124 + L1M4 LINE L1 2101 2771 -4054 1025 167 62 66 chr3 138276612 138276839 -89247739 + AluJb SINE Alu 73 298 -14 1146 112 39 0 chr3 138276840 138277018 -89247560 - MER51B LTR ERV1 -192 185 1 533 78 100 0 chr3 138277018 138277108 -89247470 - MER41A-int LTR ERV1 -5847 99 1 2043 105 15 85 chr3 138277108 138277317 -89247261 - MER41A LTR ERV1 0 554 383 2224 88 3 26 chr3 138277317 138277622 -89246956 - AluY SINE Alu -11 300 3 2043 105 15 85 chr3 138277622 138277801 -89246777 - MER41A LTR ERV1 -171 383 193 796 87 24 0 chr3 138277801 138277927 -89246651 - L1P5 LINE L1 -534 5620 5492 638 195 5 54 chr3 138277930 138278135 -89246443 - L1M4 LINE L1 -2104 4042 3848 1546 178 65 7 chr3 138278136 138278412 -89246166 - AluJo SINE Alu -20 292 1 2488 81 3 0 chr3 138278420 138278729 -89245849 - AluSg SINE Alu 0 310 1 852 129 92 32 chr3 138278733 138278950 -89245628 - L1MDa LINE L1 -3987 2553 2324 269 254 0 14 chr3 138279457 138279528 -89245050 + MIR SINE MIR 193 262 0 485 196 98 0 chr3 138279678 138279790 -89244788 - MER119 DNA MER1_type 0 583 461 1001 97 26 0 chr3 138279790 138279944 -89244634 + L1PB3 LINE L1 5632 5789 -365 2317 130 3 11 chr3 138279983 138280359 -89244219 + L1PB3 LINE L1 5780 6152 -2 4072 170 14 1 chr3 138280405 138281104 -89243474 + L1M1 LINE L1 18 725 -6840 2735 126 21 4 chr3 138281092 138281567 -89243011 + L1M1 LINE L1 2702 3184 -4381 * 1029 135 102 7 chr3 138281567 138281864 -89242714 - MSTA LTR MaLR 0 428 1 6741 217 28 43 chr3 138281864 138284608 -89239970 + L1M1 LINE L1 3180 5885 -1680 18822 161 17 23 chr3 138284608 138284665 -89239913 + L1PA12 LINE L1 1 57 -7527 2756 96 0 0 chr3 138284665 138285020 -89239558 + THE1A LTR MaLR 1 355 0 18822 161 17 23 chr3 138285020 138289428 -89235150 + L1PA12 LINE L1 57 4449 -3135 792 130 0 62 chr3 138289442 138289621 -89234957 + L1PA15-16 LINE L1 2066 2230 -4616 25 83 0 0 chr3 138290465 138290525 -89234053 + AT_rich Low_complexity Low_complexity 1 60 0 498 230 106 61 chr3 138290715 138291110 -89233468 - L1MC5 LINE L1 -76 7885 7473 812 166 0 63 chr3 138291116 138291291 -89233287 - FAM SINE Alu -9 40 1 370 214 16 83 chr3 138291297 138291489 -89233089 - L1MC5 LINE L1 -476 7485 7307 2316 116 0 0 chr3 138291734 138292035 -89232543 + AluSx SINE Alu 1 301 -11 21 36 0 0 chr3 138292539 138292567 -89232011 + AT_rich Low_complexity Low_complexity 1 28 0 191 196 20 39 chr3 138292834 138292885 -89231693 - L2 LINE L2 -1 3312 3263 195 272 194 29 chr3 138293163 138293266 -89231312 + MER5A DNA MER1_type 31 150 -39 779 119 0 86 chr3 138294023 138294174 -89230404 - FLAM_C SINE Alu 0 143 6 1897 161 10 7 chr3 138294182 138294480 -89230098 - AluJo SINE Alu -12 300 2 2276 113 7 0 chr3 138294912 138295214 -89229364 + AluSg SINE Alu 1 304 -6 37339 76 4 7 chr3 138295373 138301540 -89223038 - L1PA5 LINE L1 0 6154 2 1875 157 3 7 chr3 138302240 138302550 -89222028 + AluJb SINE Alu 2 310 0 875 152 0 14 chr3 138302832 138302970 -89221608 + AluJb SINE Alu 1 136 -176 732 124 133 0 chr3 138303265 138303378 -89221200 + FLAM_C SINE Alu 1 128 -5 4514 233 83 39 chr3 138303403 138304149 -89220429 + L1MDb LINE L1 391 1103 -5303 2375 113 3 0 chr3 138304149 138304459 -89220119 + AluSx SINE Alu 1 311 -1 4514 233 83 39 chr3 138304459 138306022 -89218556 + L1MDb LINE L1 1103 2596 -3810 2184 99 3 0 chr3 138306022 138306325 -89218253 + AluSx SINE Alu 1 304 0 4514 233 83 39 chr3 138306325 138307300 -89217278 + L1MDb LINE L1 2596 3647 -2759 1688 144 35 74 chr3 138307300 138307612 -89216966 + AluJo SINE Alu 1 300 -12 4514 233 83 39 chr3 138307612 138308044 -89216534 + L1MDb LINE L1 3647 4059 -2347 385 321 230 13 chr3 138308408 138308726 -89215852 + L2 LINE L2 1355 1741 -1573 754 221 169 131 chr3 138308749 138309613 -89214965 + LTR28 LTR ERV1 1 1755 0 1053 331 78 19 chr3 138309629 138310254 -89214324 + L2 LINE L2 1842 2503 -811 442 247 10 0 chr3 138310275 138310372 -89214206 - MER96B DNA MER1_type? 0 417 320 393 336 44 105 chr3 138310374 138310759 -89213819 + L2 LINE L2 2651 2991 -281 1837 170 3 0 chr3 138310759 138311080 -89213498 - AluJo SINE Alu 0 322 1 393 336 44 105 chr3 138311080 138311346 -89213232 + L2 LINE L2 2991 3272 0 2518 78 0 0 chr3 138311367 138311675 -89212903 + AluY SINE Alu 1 308 -3 291 301 11 97 chr3 138312468 138312654 -89211924 + MER5B DNA MER1_type 1 170 -8 * 364 301 26 72 chr3 138312578 138312771 -89211807 + MIR SINE MIR 73 256 -6 957 102 0 3 chr3 138313612 138313751 -89210827 - AluY SINE Alu -9 302 174 425 333 38 8 chr3 138313746 138313878 -89210700 + L2 LINE L2 3136 3271 -1 * 226 211 0 26 chr3 138314511 138314587 -89209991 + GA-rich Low_complexity Low_complexity 1 74 0 596 315 230 8 chr3 138314923 138315279 -89209299 - L3 LINE CR1 -97 1480 1046 2043 118 4 0 chr3 138315958 138316263 -89208315 + AluSx SINE Alu 1 306 0 2122 110 0 7 chr3 138318000 138318292 -89206286 + AluSc SINE Alu 5 294 -15 1418 109 95 0 chr3 138318563 138318773 -89205805 + MER30 DNA MER1_type 1 230 0 199 70 23 23 chr3 138318832 138318875 -89205703 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 246 306 0 0 chr3 138319047 138319109 -89205469 - MIR SINE MIR -55 153 92 2004 156 0 6 chr3 138319122 138319436 -89205142 + AluSx SINE Alu 1 312 0 918 130 0 0 chr3 138319463 138319594 -89204984 - FLAM_C SINE Alu -2 131 1 39151 76 9 10 chr3 138319971 138326124 -89198454 + L1PA6 LINE L1 11 6153 -1 32 0 0 0 chr3 138326124 138326156 -89198422 + AT_rich Low_complexity Low_complexity 1 32 0 257 51 26 0 chr3 138326611 138326650 -89197928 + (CA)n Simple_repeat Simple_repeat 2 41 0 180 152 0 0 chr3 138326869 138326902 -89197676 + (CA)n Simple_repeat Simple_repeat 2 34 0 2130 114 7 0 chr3 138327170 138327451 -89197127 + AluSx SINE Alu 1 283 -29 218 115 66 0 chr3 138327461 138327522 -89197056 + (TA)n Simple_repeat Simple_repeat 2 66 0 22 35 0 0 chr3 138327598 138327627 -89196951 + AT_rich Low_complexity Low_complexity 1 29 0 183 273 164 23 chr3 138327710 138327838 -89196740 - L2 LINE L2 -212 3060 2915 235 346 20 79 chr3 138327968 138328271 -89196307 - L2 LINE L2 -562 2752 2468 182 344 111 38 chr3 138328316 138328659 -89195919 - L2 LINE L2 -1074 2240 1873 218 312 128 18 chr3 138328718 138328827 -89195751 + L2 LINE L2 3188 3308 -5 242 241 0 0 chr3 138328827 138328881 -89195697 + (TTAAA)n Simple_repeat Simple_repeat 5 58 0 365 182 101 30 chr3 138329123 138329222 -89195356 + L1ME3 LINE L1 6055 6160 -2 21 0 0 0 chr3 138329361 138329382 -89195196 + AT_rich Low_complexity Low_complexity 1 21 0 723 205 19 13 chr3 138329717 138329873 -89194705 - MER103 DNA DNA -2 164 8 359 345 44 28 chr3 138330166 138330309 -89194269 + L3b LINE CR1 1123 1273 -310 2314 101 0 0 chr3 138330309 138330605 -89193973 - AluSx SINE Alu -16 296 1 359 345 44 28 chr3 138330605 138330713 -89193865 + L3b LINE CR1 1273 1378 -205 987 199 0 6 chr3 138331566 138331742 -89192836 - FAM SINE Alu 0 175 1 25 31 0 0 chr3 138333044 138333076 -89191502 + AT_rich Low_complexity Low_complexity 1 32 0 2109 107 37 17 chr3 138334367 138334666 -89189912 + AluSq SINE Alu 1 305 -8 347 253 77 0 chr3 138334780 138334871 -89189707 - MIR SINE MIR -108 154 57 2091 122 20 0 chr3 138335034 138335404 -89189174 + AluSg SINE Alu 1 376 0 184 235 15 73 chr3 138335579 138335647 -89188931 - L2 LINE L2 0 3313 3250 215 188 125 0 chr3 138336460 138336508 -89188070 - MIR3 SINE MIR -3 205 152 266 396 0 10 chr3 138336546 138336647 -89187931 - MER5A DNA MER1_type -73 116 17 1799 266 80 26 chr3 138337065 138337826 -89186752 + L1M4 LINE L1 4277 5105 -1041 2423 72 16 3 chr3 138337826 138338130 -89186448 - AluSg SINE Alu -2 308 1 1799 266 80 26 chr3 138338130 138338362 -89186216 + L1M4 LINE L1 5105 5323 -823 326 40 0 20 chr3 138338370 138338420 -89186158 + AluY SINE Alu 253 301 0 1208 143 9 67 chr3 138338437 138338624 -89185954 + MER4B LTR ERV1 400 575 -35 2003 105 0 0 chr3 138338624 138338914 -89185664 + AluSq SINE Alu 18 307 0 1208 143 9 67 chr3 138338914 138338949 -89185629 + MER4B LTR ERV1 575 610 0 369 254 161 0 chr3 138338949 138339067 -89185511 - L1MC/D LINE L1 -2080 5728 5592 280 219 50 20 chr3 138339064 138339173 -89185405 - L1P LINE L1 -791 5355 5244 * 464 162 41 147 chr3 138339228 138339425 -89185153 - L1ME3 LINE L1 -17 6145 5970 467 302 81 14 chr3 138339919 138340214 -89184364 - HAL1b LINE L1 -673 675 361 2456 62 0 23 chr3 138340229 138340534 -89184044 - AluY SINE Alu -13 298 1 222 236 9 57 chr3 138341130 138341236 -89183342 + A-rich Low_complexity Low_complexity 4 104 0 2766 151 36 4 chr3 138341274 138341771 -89182807 + L1MC1 LINE L1 5713 6225 -108 209 98 24 0 chr3 138341853 138341894 -89182684 + (TA)n Simple_repeat Simple_repeat 1 42 0 25 31 0 0 chr3 138341901 138341933 -89182645 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr3 138342179 138342204 -89182374 + AT_rich Low_complexity Low_complexity 1 25 0 1245 291 83 15 chr3 138342587 138343260 -89181318 - L2 LINE L2 -93 3220 2492 966 309 56 31 chr3 138343588 138344067 -89180511 + MER20B DNA MER1_type 1 491 -292 724 231 88 8 chr3 138344206 138344444 -89180134 + MER20B DNA MER1_type 519 775 -8 799 279 54 48 chr3 138344621 138344962 -89179616 - L1MEd LINE L1 -1842 4287 3940 2131 151 0 0 chr3 138344962 138345274 -89179304 - AluSx SINE Alu 0 312 1 799 279 54 48 chr3 138345274 138345449 -89179129 - L1MEd LINE L1 -2189 3940 3768 42 17 0 17 chr3 138345501 138345530 -89179048 + AT_rich Low_complexity Low_complexity 1 29 -30 1937 152 0 3 chr3 138345530 138345820 -89178758 + AluSx SINE Alu 1 289 -23 42 17 0 17 chr3 138345820 138345850 -89178728 + AT_rich Low_complexity Low_complexity 29 59 0 9742 144 42 36 chr3 138345850 138346847 -89177731 + L1MA4 LINE L1 3370 4360 -1940 414 0 0 0 chr3 138346847 138346893 -89177685 + (CA)n Simple_repeat Simple_repeat 2 47 0 9742 144 42 36 chr3 138346893 138346915 -89177663 + L1MA4 LINE L1 4360 4380 -1920 1574 197 3 10 chr3 138346915 138347209 -89177369 + AluJo SINE Alu 10 301 -11 9742 144 42 36 chr3 138347209 138349074 -89175504 + L1MA4 LINE L1 4380 6291 -9 1299 273 100 76 chr3 138349106 138349403 -89175175 - L1MEd LINE L1 -2847 3282 2994 938 205 0 0 chr3 138349403 138349569 -89175009 + FAM SINE Alu 1 166 -9 195 42 0 0 chr3 138349570 138349594 -89174984 + (TTAA)n Simple_repeat Simple_repeat 1 24 0 1299 273 100 76 chr3 138349594 138350115 -89174463 - L1MEd LINE L1 -3135 2994 2423 252 86 0 0 chr3 138350115 138350150 -89174428 + (CA)n Simple_repeat Simple_repeat 2 36 0 1299 273 100 76 chr3 138350150 138350487 -89174091 - L1MEd LINE L1 -3706 2423 2096 477 265 185 35 chr3 138351021 138351485 -89173093 - HAL1 LINE L1 -861 1646 1113 434 279 48 71 chr3 138351486 138351837 -89172741 - L1MEd LINE L1 -5113 1006 664 259 333 15 44 chr3 138352731 138352866 -89171712 - MIR SINE MIR -62 146 16 1046 343 84 34 chr3 138353238 138354459 -89170119 - L2 LINE L2 -5 3308 1965 319 385 33 0 chr3 138355706 138355828 -89168750 + L2 LINE L2 2855 2980 -333 2379 214 101 32 chr3 138355850 138356154 -89168424 - L1ME3 LINE L1 -15 6147 5865 219 36 0 0 chr3 138356154 138356182 -89168396 + (TTATA)n Simple_repeat Simple_repeat 5 32 0 2379 214 101 32 chr3 138356182 138356786 -89167792 - L1ME3 LINE L1 -297 5865 5169 37 52 0 0 chr3 138356963 138357021 -89167557 + AT_rich Low_complexity Low_complexity 1 58 0 29 47 0 0 chr3 138357044 138357087 -89167491 + AT_rich Low_complexity Low_complexity 1 43 0 32279 67 4 12 chr3 138357275 138361679 -89162899 + L1P LINE L1 638 5003 -1143 264 368 0 0 chr3 138364431 138364526 -89160052 + (CA)n Simple_repeat Simple_repeat 1 95 0 531 85 0 0 chr3 138364608 138364690 -89159888 + (TA)n Simple_repeat Simple_repeat 1 82 0 986 229 70 28 chr3 138364913 138365197 -89159381 - L1ME3 LINE L1 -1181 4965 4670 824 219 148 25 chr3 138365197 138365475 -89159103 - L1ME3 LINE L1 -2315 3831 3520 2071 125 14 0 chr3 138365499 138365788 -89158790 - AluSc SINE Alu -16 293 1 336 253 77 0 chr3 138365951 138366042 -89158536 + MIR SINE MIR 57 154 -108 324 132 29 15 chr3 138366157 138366225 -89158353 - AluSp/q SINE Alu 0 303 235 1932 127 10 23 chr3 138366843 138367150 -89157428 + AluSq SINE Alu 1 303 -10 312 237 9 97 chr3 138368263 138368377 -89156201 + L2 LINE L2 3209 3312 -1 305 293 142 34 chr3 138369031 138369447 -89155131 + L1MEc LINE L1 1713 2173 -4223 2271 112 3 0 chr3 138369451 138369755 -89154823 + AluSx SINE Alu 1 305 -7 3095 125 49 22 chr3 138369762 138370314 -89154264 + L1MB7 LINE L1 5366 5932 -252 70 49 0 28 chr3 138372070 138372212 -89152366 + AT_rich Low_complexity Low_complexity 1 138 0 4407 171 14 13 chr3 138372505 138373296 -89151282 - MST-int LTR MaLR -14 1637 846 1374 173 35 35 chr3 138373297 138373552 -89151026 - MSTA LTR MaLR -173 255 1 2187 171 22 29 chr3 138373854 138374310 -89150268 - L1MC2 LINE L1 -70 6274 5822 834 174 0 21 chr3 138374310 138374454 -89150124 - FLAM_C SINE Alu 0 143 3 1930 197 23 8 chr3 138374455 138374851 -89149727 - L1MC2 LINE L1 -518 5826 5425 6175 49 22 19 chr3 138374977 138375749 -89148829 + L1PA6 LINE L1 5380 6153 -1 2270 113 7 0 chr3 138375909 138376211 -89148367 - AluSg SINE Alu -6 304 1 506 304 52 30 chr3 138376622 138376892 -89147686 + MER20B DNA MER1_type 216 491 -292 774 231 88 8 chr3 138377031 138377269 -89147309 + MER20B DNA MER1_type 519 775 -8 327 314 62 19 chr3 138377427 138377685 -89146893 - L1M4 LINE L1 -1822 4324 4056 29 0 0 0 chr3 138378320 138378349 -89146229 + AT_rich Low_complexity Low_complexity 1 29 0 690 285 36 10 chr3 138378905 138379098 -89145480 - MIR SINE MIR -19 243 46 417 258 74 64 chr3 138379402 138379701 -89144877 - L1MC4a LINE L1 -302 5819 5602 1012 181 91 14 chr3 138379956 138380177 -89144401 + MER21B LTR ERV1 615 852 -11 1225 163 0 41 chr3 138381193 138381414 -89143164 + AluJo SINE Alu 89 300 -12 287 277 0 0 chr3 138381417 138381482 -89143096 + MLT1J LTR MaLR 447 511 0 255 306 83 21 chr3 138381491 138381635 -89142943 - MIR SINE MIR -109 153 1 1596 110 68 0 chr3 138381872 138382108 -89142470 - L1PA11 LINE L1 -3 6171 5920 620 162 0 0 chr3 138382108 138382207 -89142371 + L1P LINE L1 5185 5283 -863 260 387 45 18 chr3 138382243 138382354 -89142224 - L2 LINE L2 -10 3262 3149 612 286 125 5 chr3 138383597 138383821 -89140757 - MIR SINE MIR 0 262 12 304 298 71 14 chr3 138383902 138384046 -89140532 - MIR SINE MIR -72 136 16 312 263 158 11 chr3 138384792 138384887 -89139691 - MER5A DNA MER1_type -77 112 4 1173 112 0 0 chr3 138385021 138385182 -89139396 + AluSp SINE Alu 151 311 -2 254 279 119 50 chr3 138385630 138385849 -89138729 + L3 LINE CR1 1307 1540 -37 335 316 51 0 chr3 138386040 138386138 -89138440 + MIR3 SINE MIR 76 178 -30 207 298 171 40 chr3 138386756 138386984 -89137594 + L2 LINE L2 2717 2974 -340 325 260 0 0 chr3 138387266 138387343 -89137235 + L2 LINE L2 3235 3311 -2 464 303 57 0 chr3 138387695 138387817 -89136761 - MER5A DNA MER1_type 0 189 61 2291 113 3 0 chr3 138387838 138388147 -89136431 - AluSx SINE Alu -2 310 1 2025 160 10 0 chr3 138388177 138388484 -89136094 - AluJo SINE Alu -1 311 2 427 167 0 0 chr3 138388495 138388561 -89136017 - MER5A DNA MER1_type -123 66 1 369 0 0 0 chr3 138388579 138388620 -89135958 + (CA)n Simple_repeat Simple_repeat 2 42 0 436 313 78 16 chr3 138388620 138388812 -89135766 + MIR SINE MIR 29 232 -30 24 32 0 0 chr3 138389662 138389693 -89134885 + AT_rich Low_complexity Low_complexity 1 31 0 187 54 54 0 chr3 138389852 138389889 -89134689 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 246 62 0 0 chr3 138390901 138390933 -89133645 + (TC)n Simple_repeat Simple_repeat 1 32 0 218 327 0 0 chr3 138391156 138391211 -89133367 - MIR SINE MIR -162 100 46 185 362 0 0 chr3 138391683 138391741 -89132837 + MIR SINE MIR 30 87 -175 386 256 125 19 chr3 138391831 138391991 -89132587 + MIR SINE MIR 86 262 0 27 0 0 0 chr3 138392528 138392555 -89132023 + AT_rich Low_complexity Low_complexity 1 27 0 2529 189 18 2 chr3 138392853 138393349 -89131229 + L1P LINE L1 3176 3679 -2467 625 198 4 39 chr3 138393333 138393448 -89131130 + L1P LINE L1 4015 4129 -2017 * 1762 123 25 0 chr3 138393448 138393716 -89130862 + L1MA3 LINE L1 6022 6305 0 625 198 4 39 chr3 138393716 138393746 -89130832 + L1P LINE L1 4129 4159 -1987 * 5453 152 22 46 chr3 138393740 138394205 -89130373 - L1MC2 LINE L1 -62 6282 5807 886 150 0 15 chr3 138394205 138394338 -89130240 - FLAM_C SINE Alu -2 131 1 5453 152 22 46 chr3 138394338 138394976 -89129602 - L1MC2 LINE L1 -537 5807 5205 2198 176 91 16 chr3 138394987 138395429 -89129149 - MER34B LTR ERV1 -90 475 1 802 230 37 61 chr3 138395486 138395827 -89128751 - MER34B-int LTR ERV1 -151 6180 4565 355 241 0 0 chr3 138395801 138395880 -89128698 - MER34B-int LTR ERV1 -941 3930 3852 * 2552 174 40 67 chr3 138395885 138396455 -89128123 - MER31-int LTR ERV1 -371 4565 4011 1792 201 16 45 chr3 138396456 138396685 -89127893 - L1MC2 LINE L1 -979 5167 4933 1559 201 38 0 chr3 138396685 138396854 -89127724 - AluJb SINE Alu -12 300 114 180 0 0 0 chr3 138396854 138396874 -89127704 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1559 201 38 0 chr3 138396874 138396993 -89127585 - AluJb SINE Alu -198 114 1 1792 201 16 45 chr3 138396993 138397250 -89127328 - L1MC2 LINE L1 -1213 4933 4695 1744 206 39 85 chr3 138397270 138397915 -89126663 + L1MC/D LINE L1 4851 5429 -813 3215 171 14 60 chr3 138397915 138398554 -89126024 + LTR9 LTR ERV1 3 612 0 1744 206 39 85 chr3 138398554 138398756 -89125822 + L1MC/D LINE L1 5429 5639 -603 2969 103 34 51 chr3 138398918 138399023 -89125555 + LTR8A LTR ERV1 1 106 -621 3957 96 10 0 chr3 138399023 138399532 -89125046 + MER75 DNA T2_type 1 514 0 2969 103 34 51 chr3 138399532 138400064 -89124514 + LTR8A LTR ERV1 106 727 0 463 314 67 59 chr3 138400234 138400266 -89124312 + ERVL LTR ERVL 1260 1290 -4474 2282 140 83 12 chr3 138400266 138400674 -89123904 - LTR23 LTR ERV1 0 437 1 463 314 67 59 chr3 138400674 138400744 -89123834 + ERVL LTR ERVL 1290 1358 -4406 2572 187 97 73 chr3 138400744 138401454 -89123124 - LTR8A LTR ERV1 0 727 1 463 314 67 59 chr3 138401454 138401739 -89122839 + ERVL LTR ERVL 1358 1651 -4113 592 309 52 33 chr3 138401793 138402065 -89122513 - ERVL LTR ERVL -1703 4061 3785 1293 296 65 16 chr3 138402110 138402614 -89121964 - ERVL LTR ERVL -2059 3705 3177 365 216 0 57 chr3 138402616 138402704 -89121874 + MER94 DNA DNA 1 83 -51 373 167 77 149 chr3 138402794 138402896 -89121682 + HAL1b LINE L1 281 368 -980 762 273 22 6 chr3 138402896 138403079 -89121499 - MER5A DNA MER1_type -3 186 1 373 167 77 149 chr3 138403079 138403144 -89121434 + HAL1b LINE L1 368 436 -912 285 207 17 0 chr3 138403184 138403242 -89121336 + HAL1b LINE L1 396 454 -894 2317 112 51 28 chr3 138403446 138403802 -89120776 + THE1B LTR MaLR 1 364 0 12567 88 8 3 chr3 138403802 138405374 -89119204 + THE1B-int LTR MaLR 1 1580 0 2305 117 54 20 chr3 138405374 138405726 -89118852 + THE1B LTR MaLR 1 364 0 846 229 127 55 chr3 138406196 138406476 -89118102 + HAL1b LINE L1 799 1118 -230 1765 175 0 26 chr3 138406476 138406784 -89117794 - AluJo SINE Alu -11 301 2 846 229 127 55 chr3 138406784 138406904 -89117674 + HAL1b LINE L1 1118 1228 -120 1430 233 64 5 chr3 138406914 138407287 -89117291 - L1MB8 LINE L1 -4 6434 6040 2050 137 89 22 chr3 138407296 138407654 -89116924 + MLT1B LTR MaLR 5 386 -4 2610 197 71 20 chr3 138407658 138408412 -89116166 - L1MB8 LINE L1 -702 5724 4930 5519 205 88 67 chr3 138408412 138408714 -89115864 - L1MB8 LINE L1 -2315 4091 3797 2203 117 7 0 chr3 138408714 138409005 -89115573 - AluSc SINE Alu -16 293 1 5519 205 88 67 chr3 138409005 138409447 -89115131 - L1MB8 LINE L1 -2609 3797 3365 613 109 50 0 chr3 138409447 138409548 -89115030 - MER50 LTR ERV1 -130 604 499 5519 205 88 67 chr3 138409548 138412740 -89111838 - L1MB8 LINE L1 -3041 3365 5 1690 158 23 48 chr3 138413864 138414174 -89110404 - AluJo SINE Alu -6 306 5 1994 205 24 3 chr3 138415493 138415869 -89108709 - MER21B LTR ERV1 -283 580 197 226 309 29 0 chr3 138415910 138415978 -89108600 - MER5A DNA MER1_type -59 130 61 1839 138 9 17 chr3 138415979 138416498 -89108080 - LTR59 LTR ERV1 -6 591 1 320 194 16 0 chr3 138416498 138416560 -89108018 - MER5A DNA MER1_type -126 63 1 302 281 212 39 chr3 138417073 138417276 -89107302 - MIR SINE MIR -6 256 19 257 304 78 52 chr3 138418467 138418582 -89105996 - MIR SINE MIR -55 153 36 2279 112 0 0 chr3 138418949 138419244 -89105334 + AluSx SINE Alu 1 295 -17 418 277 17 25 chr3 138419383 138419502 -89105076 + MER5A DNA MER1_type 50 167 -22 356 293 57 0 chr3 138420193 138420317 -89104261 + MIR SINE MIR 2 133 -75 206 315 77 54 chr3 138423277 138423407 -89101171 - MIR3 SINE MIR -69 139 7 2314 99 0 3 chr3 138423712 138424006 -89100572 + AluSq SINE Alu 1 293 -20 235 264 273 8 chr3 138424011 138424132 -89100446 + MARNA DNA Mariner 63 215 -371 361 231 183 18 chr3 138424163 138424332 -89100246 + MARNA DNA Mariner 358 554 -32 311 224 61 20 chr3 138424545 138424643 -89099935 - MIR SINE MIR -39 223 122 2169 114 3 0 chr3 138424931 138425229 -89099349 - AluSc SINE Alu -10 299 1 245 326 61 20 chr3 138425265 138425363 -89099215 - MIR SINE MIR -141 121 20 877 193 56 0 chr3 138425397 138425558 -89099020 + FRAM SINE Alu 1 168 -8 281 252 185 53 chr3 138427167 138427318 -89097260 - L2 LINE L2 -3 3310 3140 791 315 160 38 chr3 138427393 138427591 -89096987 + L2 LINE L2 2274 2447 -825 2527 126 27 0 chr3 138427591 138427956 -89096622 + THE1C LTR MaLR 1 375 0 791 315 160 38 chr3 138427956 138428633 -89095945 + L2 LINE L2 2447 3271 -1 2182 104 16 3 chr3 138429232 138429541 -89095037 - AluSq SINE Alu 0 313 1 7006 61 2 1 chr3 138429766 138430719 -89093859 + L1PA7 LINE L1 5172 6126 -28 207 0 0 0 chr3 138430727 138430750 -89093828 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 365 233 83 33 chr3 138430773 138430893 -89093685 + MIR SINE MIR 16 141 -67 254 303 40 0 chr3 138432190 138432266 -89092312 - MIR SINE MIR -142 120 42 431 251 90 36 chr3 138432387 138432554 -89092024 - MIR SINE MIR -5 257 82 206 253 0 51 chr3 138434442 138434521 -89090057 + C-rich Low_complexity Low_complexity 2 76 0 1972 97 14 0 chr3 138434827 138435152 -89089426 + AluSx SINE Alu 1 329 0 215 232 0 0 chr3 138435301 138435357 -89089221 + (TTTA)n Simple_repeat Simple_repeat 3 58 0 243 0 0 0 chr3 138435981 138436008 -89088570 + (CAG)n Simple_repeat Simple_repeat 1 27 0 324 298 93 7 chr3 138436341 138436492 -89088086 + MER103 DNA DNA 2 165 -1 916 272 38 13 chr3 138436789 138437028 -89087550 - MIR SINE MIR -13 249 5 616 240 55 116 chr3 138437329 138437388 -89087190 - MIR SINE MIR -1 261 200 606 185 28 0 chr3 138437388 138437496 -89087082 - HY1 scRNA scRNA 0 112 2 616 240 55 116 chr3 138437496 138437711 -89086867 - MIR SINE MIR -62 200 4 324 257 27 0 chr3 138438045 138438119 -89086459 + L2 LINE L2 3227 3302 -11 266 287 174 9 chr3 138438135 138438250 -89086328 - L2 LINE L2 -230 3042 2909 411 345 63 26 chr3 138438286 138438637 -89085941 - L2 LINE L2 -477 2837 2474 616 238 72 99 chr3 138438962 138439379 -89085199 + L1ME3A LINE L1 4083 4479 -1667 2186 122 0 0 chr3 138439379 138439682 -89084896 - AluSq SINE Alu -10 303 1 616 238 72 99 chr3 138439682 138439902 -89084676 + L1ME3A LINE L1 4479 4703 -1443 1478 227 36 31 chr3 138439912 138440238 -89084340 + MER21B LTR ERV1 426 756 -107 2537 56 0 28 chr3 138440238 138440558 -89084020 + AluY SINE Alu 1 311 0 1478 227 36 31 chr3 138440558 138440615 -89083963 + MER21B LTR ERV1 756 811 -52 709 301 152 25 chr3 138440765 138441317 -89083261 + L1ME3A LINE L1 5265 5886 -284 2137 108 3 0 chr3 138441421 138441708 -89082870 + AluSx SINE Alu 1 288 -24 198 0 0 0 chr3 138441708 138441730 -89082848 + (TA)n Simple_repeat Simple_repeat 2 23 0 258 361 66 0 chr3 138442028 138442150 -89082428 + MIR3 SINE MIR 71 200 -8 261 0 0 0 chr3 138442820 138442849 -89081729 + (TC)n Simple_repeat Simple_repeat 2 30 0 363 255 20 20 chr3 138442982 138443080 -89081498 - MER5B DNA MER1_type -74 104 7 269 323 36 18 chr3 138443341 138443450 -89081128 + MIR3 SINE MIR 49 160 -48 2416 158 3 6 chr3 138443679 138444045 -89080533 + MLT1A1 LTR MaLR 1 365 0 2251 263 53 39 chr3 138444161 138444714 -89079864 - L1ME3 LINE L1 0 6162 5618 2422 224 78 6 chr3 138444714 138445240 -89079338 + MLT1F1 LTR MaLR 1 564 -3 2251 263 53 39 chr3 138445240 138446307 -89078271 - L1ME3 LINE L1 -544 5618 4520 260 177 76 25 chr3 138446336 138446415 -89078163 - L1ME3 LINE L1 -1759 4387 4305 606 236 81 40 chr3 138446495 138446791 -89077787 + L1MCc LINE L1 15 322 -6101 2453 102 51 23 chr3 138446867 138447221 -89077357 - THE1B LTR MaLR 0 364 1 298 150 17 33 chr3 138447581 138447641 -89076937 + LTR49 LTR ERV1 459 517 -78 1852 169 182 6 chr3 138447657 138448019 -89076559 + MSTA LTR MaLR 3 428 0 10227 167 16 12 chr3 138448019 138448505 -89076073 + MSTA-int LTR MaLR 1 483 -1168 2325 102 0 0 chr3 138448505 138448799 -89075779 + AluY SINE Alu 2 295 -16 10227 167 16 12 chr3 138448799 138449956 -89074622 + MSTA-int LTR MaLR 483 1651 0 1810 128 158 85 chr3 138449956 138450355 -89074223 + MSTA LTR MaLR 1 428 0 2652 229 85 56 chr3 138450361 138451095 -89073483 + L1MCc LINE L1 892 1603 -5338 402 198 47 0 chr3 138451095 138451181 -89073397 + L1MA5A LINE L1 6208 6297 0 2652 229 85 56 chr3 138451181 138452014 -89072564 + L1MCc LINE L1 1603 2516 -4425 2238 245 58 12 chr3 138452653 138453343 -89071235 + L1M4 LINE L1 4655 5376 -770 2176 184 13 20 chr3 138453344 138453740 -89070838 + MSTD LTR MaLR 2 394 -2 1854 175 3 11 chr3 138453744 138454110 -89070468 - L1 LINE L1 -1633 4749 4387 * 43720 32 22 2 chr3 138454109 138460136 -89064442 - L1PA2 LINE L1 0 6155 3 6279 214 109 52 chr3 138460139 138461000 -89063578 - L1 LINE L1 -1982 4400 3590 825 146 0 0 chr3 138461000 138461123 -89063455 - FLAM_C SINE Alu -10 133 11 6279 214 109 52 chr3 138461123 138461864 -89062714 - L1 LINE L1 -2792 3590 2893 1128 177 70 120 chr3 138461864 138462248 -89062330 + MLT1A1 LTR MaLR 1 365 0 6279 214 109 52 chr3 138462248 138463925 -89060653 - L1 LINE L1 -3489 2893 893 180 0 0 0 chr3 138463925 138463945 -89060633 + (CAA)n Simple_repeat Simple_repeat 2 21 0 6279 214 109 52 chr3 138463945 138464044 -89060534 - L1 LINE L1 -5489 893 801 228 376 36 30 chr3 138464190 138464355 -89060223 - L1M3de LINE L1 -5203 688 523 253 254 87 94 chr3 138464444 138464582 -89059996 - L1M3de LINE L1 -5498 393 257 1064 287 22 65 chr3 138464651 138464767 -89059811 - L1M3de LINE L1 -5217 674 555 2200 107 17 0 chr3 138464767 138465067 -89059511 - AluSx SINE Alu -7 305 1 1064 287 22 65 chr3 138465067 138465377 -89059201 - L1M3de LINE L1 -5336 555 2 973 120 33 33 chr3 138465372 138465555 -89059023 - L1M3 LINE L1 -740 5440 5258 * 364 164 0 0 chr3 138465563 138465630 -89058948 + MLT1F LTR MaLR 474 540 -2 22 56 0 0 chr3 138465658 138465694 -89058884 + AT_rich Low_complexity Low_complexity 1 36 0 745 225 0 8 chr3 138465748 138465877 -89058701 - FLAM_A SINE Alu -5 128 1 21 0 0 0 chr3 138466061 138466082 -89058496 + AT_rich Low_complexity Low_complexity 1 21 0 464 283 109 43 chr3 138466403 138466851 -89057727 - HAL1b LINE L1 -575 1562 431 219 217 29 29 chr3 138468074 138468143 -89056435 + GA-rich Low_complexity Low_complexity 4 72 0 413 281 176 3 chr3 138468230 138468428 -89056150 - MIR SINE MIR -5 257 27 2339 78 3 13 chr3 138468525 138468832 -89055746 - AluSc SINE Alu -5 304 1 800 261 69 57 chr3 138469182 138469618 -89054960 + L1ME LINE L1 5380 5820 -301 21 57 0 0 chr3 138469787 138469822 -89054756 + AT_rich Low_complexity Low_complexity 1 35 0 712 282 31 0 chr3 138470094 138470289 -89054289 + MIR SINE MIR 3 203 -59 212 293 158 0 chr3 138470314 138470396 -89054182 - MIR SINE MIR -100 162 68 679 323 102 36 chr3 138470915 138471603 -89052975 - L2 LINE L2 -568 2746 2014 1133 97 0 7 chr3 138471603 138471758 -89052820 + AluSg/x SINE Alu 150 303 -6 1935 160 39 79 chr3 138471876 138472282 -89052296 + MLT1B LTR MaLR 1 390 0 304 339 106 24 chr3 138472300 138472554 -89052024 - L2 LINE L2 -1223 2091 1817 664 186 0 47 chr3 138472700 138472829 -89051749 + FLAM_A SINE Alu 1 123 -10 23 0 0 0 chr3 138472829 138472852 -89051726 + AT_rich Low_complexity Low_complexity 1 23 0 251 292 22 11 chr3 138473620 138473709 -89050869 + L1P3 LINE L1 5374 5463 -691 * 2386 161 65 11 chr3 138473708 138474173 -89050405 + L1MD2 LINE L1 5291 5780 -579 573 168 25 17 chr3 138474179 138474294 -89050284 + L1MD2 LINE L1 6240 6359 0 436 263 58 66 chr3 138474297 138474540 -89050038 + L1ME LINE L1 5374 5614 -507 234 333 48 38 chr3 138474601 138474706 -89049872 - L2 LINE L2 -20 3293 3188 259 286 77 0 chr3 138474880 138474971 -89049607 + MIR SINE MIR 66 163 -99 386 325 59 0 chr3 138475485 138475654 -89048924 + L1ME LINE L1 5600 5778 -343 1477 133 195 23 chr3 138475792 138476048 -89048530 - AluSx SINE Alu -2 300 1 404 247 193 0 chr3 138477221 138477387 -89047191 - MIR SINE MIR -60 202 5 658 291 62 8 chr3 138477617 138477858 -89046720 + MER102a DNA MER1_type 77 330 0 221 289 91 41 chr3 138478402 138478523 -89046055 + MIR SINE MIR 88 214 -48 376 239 103 98 chr3 138478710 138478894 -89045684 + MIR SINE MIR 69 253 -9 251 333 81 67 chr3 138478896 138479241 -89045337 - L2 LINE L2 -5 3267 2918 271 250 87 39 chr3 138481007 138481111 -89043467 - L3 LINE CR1 -2 1575 1467 303 315 47 8 chr3 138481345 138481472 -89043106 + L2 LINE L2 3140 3271 -1 4017 231 43 39 chr3 138483152 138484042 -89040536 - L1MC2 LINE L1 -9 6335 5443 * 6975 26 1 2 chr3 138484039 138485287 -89039291 + L1PA3 LINE L1 4813 6059 -96 896 210 0 5 chr3 138485409 138485604 -89038974 - L1MC2 LINE L1 -760 5386 5193 444 372 65 20 chr3 138487397 138487795 -89036783 + L3 LINE CR1 1151 1566 -11 686 260 63 18 chr3 138487973 138488196 -89036382 - MIR SINE MIR 0 262 30 265 277 158 11 chr3 138488209 138488393 -89036185 - MER113 DNA MER1_type? -309 212 2 311 362 58 0 chr3 138488877 138489051 -89035527 - MIR SINE MIR -28 234 51 198 176 39 39 chr3 138491124 138491175 -89033403 - L2 LINE L2 0 3313 3263 182 333 0 0 chr3 138493913 138493964 -89030614 + L2 LINE L2 2988 3038 -234 1322 323 135 19 chr3 138494181 138495054 -89029524 - L3 LINE CR1 -11 1566 593 1111 312 89 19 chr3 138495118 138495625 -89028953 + L2 LINE L2 2475 3006 -266 701 279 26 5 chr3 138495629 138495819 -89028759 - MLT1H1 LTR MaLR 0 555 362 1189 184 64 74 chr3 138495820 138496117 -89028461 + MER33 DNA MER1_type 2 297 -2288 2197 115 0 3 chr3 138496117 138496412 -89028166 - AluSx SINE Alu -18 294 1 1189 184 64 74 chr3 138496412 138496440 -89028138 + MER33 DNA MER1_type 297 324 0 1043 247 23 0 chr3 138496448 138496667 -89027911 - MER58A DNA MER1_type 0 224 1 * 1533 262 33 8 chr3 138496667 138497027 -89027551 - MLT1H1 LTR MaLR -186 369 1 386 315 137 14 chr3 138497125 138497271 -89027307 + L2 LINE L2 3109 3272 0 398 376 6 0 chr3 138497308 138497465 -89027113 - L3 LINE CR1 -1058 519 362 188 289 0 0 chr3 138497539 138497584 -89026994 - L2 LINE L2 -5 3308 3264 185 345 144 22 chr3 138498192 138498331 -89026247 + L2 LINE L2 3111 3266 -6 188 289 0 0 chr3 138498765 138498810 -89025768 + L2 LINE L2 3264 3308 -5 577 192 90 32 chr3 138499056 138499212 -89025366 + MIR SINE MIR 40 204 -58 580 321 124 20 chr3 138499702 138500097 -89024481 + L3 LINE CR1 1054 1489 -88 420 276 56 9 chr3 138500305 138500565 -89024013 - L1M3 LINE L1 -675 5496 5220 4089 160 32 7 chr3 138500775 138501470 -89023108 + L1MB3 LINE L1 5471 6182 -1 716 276 165 41 chr3 138501639 138502131 -89022447 + L1MC4a LINE L1 5424 5976 -1832 270 229 0 0 chr3 138502747 138502795 -89021783 + 5S rRNA rRNA 1 48 -73 604 269 114 0 chr3 138502964 138503131 -89021447 + MER5A DNA MER1_type 2 187 -2 676 250 64 9 chr3 138503391 138503611 -89020967 - MLT1J2 LTR MaLR -214 236 5 1015 189 32 57 chr3 138504338 138504586 -89019992 + MER69 DNA AcHobo 6 247 -979 236 198 10 83 chr3 138504581 138504677 -89019901 + MER69 DNA AcHobo 2435 2523 -3 * 188 236 278 0 chr3 138504688 138504760 -89019818 + MIR3 SINE MIR 109 200 -8 843 207 6 6 chr3 138505270 138505439 -89019139 - FRAM SINE Alu -2 174 6 2152 163 42 0 chr3 138505479 138505811 -89018767 - MER7A DNA MER2_type 0 346 3 990 231 9 9 chr3 138505836 138506057 -89018521 - MIR SINE MIR -25 237 17 2127 96 13 54 chr3 138507295 138507608 -89016970 - AluSx SINE Alu -12 300 1 1256 167 15 61 chr3 138508218 138508481 -89016097 - AluJo SINE Alu -44 268 18 23 86 0 0 chr3 138508552 138508610 -89015968 + AT_rich Low_complexity Low_complexity 1 58 0 22 35 0 0 chr3 138508633 138508662 -89015916 + AT_rich Low_complexity Low_complexity 1 29 0 912 236 47 17 chr3 138508682 138508915 -89015663 - MIR SINE MIR -21 241 2 954 265 86 37 chr3 138508925 138509332 -89015246 - L1MC/D LINE L1 -1988 5820 5394 497 284 16 0 chr3 138509338 138509465 -89015113 - L2 LINE L2 -1 3312 3184 1465 206 13 83 chr3 138509465 138509862 -89014716 - MER76 LTR ERV 0 688 320 1714 223 68 13 chr3 138509886 138510271 -89014307 - MER76 LTR ERV -282 406 1 822 291 188 59 chr3 138510279 138511552 -89013026 - L2 LINE L2 -129 3184 1738 226 383 0 28 chr3 138511632 138511739 -89012839 - L2 LINE L2 -2093 1221 1118 1170 203 5 0 chr3 138511811 138512018 -89012560 - MER3 DNA MER1_type -1 208 1 317 325 39 43 chr3 138512041 138512296 -89012282 - L2 LINE L2 -2367 947 694 294 352 21 48 chr3 138512460 138512605 -89011973 - L2 LINE L2 -2916 398 258 380 304 0 0 chr3 138513370 138513472 -89011106 - MER5A DNA MER1_type -79 110 9 258 32 0 0 chr3 138513637 138513668 -89010910 + (TA)n Simple_repeat Simple_repeat 2 32 0 243 0 0 0 chr3 138514531 138514558 -89010020 + (T)n Simple_repeat Simple_repeat 1 27 0 509 303 36 6 chr3 138515324 138515489 -89009089 - MIR3 SINE MIR -6 202 33 1714 217 113 35 chr3 138516596 138517084 -89007494 - L1ME1 LINE L1 -24 6142 5617 279 0 0 0 chr3 138518965 138518996 -89005582 + (CA)n Simple_repeat Simple_repeat 1 31 0 546 228 51 25 chr3 138522209 138522406 -89002172 - L1ME4a LINE L1 -209 5912 5711 1791 207 58 35 chr3 138523454 138523888 -89000690 + MLT1E2 LTR MaLR 1 444 -182 1906 94 0 8 chr3 138524429 138524683 -88999895 - AluSc SINE Alu -1 308 57 5852 88 6 20 chr3 138524971 138525824 -88998754 - L1PB2 LINE L1 -2 6149 5315 563 307 91 8 chr3 138525843 138526084 -88998494 + L3 LINE CR1 1134 1394 -183 2169 110 0 10 chr3 138526094 138526413 -88998165 + AluSx SINE Alu 1 316 0 819 243 5 14 chr3 138526438 138526648 -88997930 + L1ME3A LINE L1 35 242 -6154 4743 220 48 21 chr3 138526697 138527713 -88996865 + L1ME3A LINE L1 3743 4801 -1414 1560 63 5 0 chr3 138527713 138527903 -88996675 + AluSp SINE Alu 120 310 -3 4743 220 48 21 chr3 138527903 138528138 -88996440 + L1ME3A LINE L1 4801 5028 -1187 1863 231 128 21 chr3 138528150 138529176 -88995402 + L1ME3A LINE L1 5075 6229 -10 1432 104 9 24 chr3 138529203 138529415 -88995163 - L1PB2 LINE L1 -3 6148 5940 311 241 76 0 chr3 138530506 138530585 -88993993 + L2 LINE L2 3188 3272 0 523 318 158 31 chr3 138530612 138530961 -88993617 + L2 LINE L2 2919 3311 -2 200 279 33 16 chr3 138533737 138533798 -88990780 + L2 LINE L2 3162 3223 -49 474 184 52 0 chr3 138533798 138533934 -88990644 - HAL1 LINE L1 -1322 1185 1043 636 267 10 25 chr3 138534078 138534280 -88990298 - MIR SINE MIR 0 262 64 10937 90 17 17 chr3 138534283 138535791 -88988787 + THE1C-int LTR MaLR 73 1580 0 2901 96 3 11 chr3 138535793 138536169 -88988409 + THE1C LTR MaLR 3 375 0 3524 220 164 39 chr3 138536857 138538069 -88986509 - HAL1 LINE L1 -627 1880 517 264 300 156 12 chr3 138538211 138538371 -88986207 - MIR3 SINE MIR -23 185 3 571 223 108 19 chr3 138538414 138538571 -88986007 + MIR SINE MIR 2 172 -90 2808 19 0 0 chr3 138540382 138540689 -88983889 + AluYa5 SINE Alu 1 307 -4 5702 163 14 24 chr3 138540845 138541290 -88983288 + L1P4 LINE L1 4211 4659 -1506 2439 164 50 48 chr3 138541290 138541372 -88983206 - MER66B LTR ERV1 -2 484 404 2369 63 11 0 chr3 138541372 138541656 -88982922 + AluY SINE Alu 11 297 -14 2439 164 50 48 chr3 138541656 138542056 -88982522 - MER66B LTR ERV1 -82 404 1 5702 163 14 24 chr3 138542056 138543198 -88981380 + L1P4 LINE L1 4659 5783 -382 183 156 0 0 chr3 138543262 138543294 -88981284 + CT-rich Low_complexity Low_complexity 1 32 0 256 232 36 0 chr3 138543303 138543359 -88981219 - MIR SINE MIR -14 248 191 291 243 0 40 chr3 138543835 138543909 -88980669 + MLT1K LTR MaLR 460 530 -58 285 301 103 85 chr3 138544039 138544311 -88980267 - MLT1K LTR MaLR -123 465 189 342 296 118 15 chr3 138544422 138544557 -88980021 + LTR16A1 LTR ERVL 1 149 -308 * 635 169 131 0 chr3 138544555 138544715 -88979863 - MER96B DNA MER1_type? -236 181 1 1175 192 82 14 chr3 138544742 138545023 -88979555 + LTR16A1 LTR ERVL 156 455 -2 404 309 9 55 chr3 138545195 138545282 -88979296 + HERV16 LTR ERVL 140 229 -4767 744 222 41 6 chr3 138545282 138545453 -88979125 + MER5B DNA MER1_type 2 178 0 404 309 9 55 chr3 138545453 138545585 -88978993 + HERV16 LTR ERVL 229 349 -4647 2000 128 21 3 chr3 138545589 138545878 -88978700 + AluSx SINE Alu 1 294 -18 5052 42 0 0 chr3 138545878 138546494 -88978084 - L1PA3 LINE L1 -802 5344 4729 4420 10 2 2 chr3 138546492 138546985 -88977593 + L1PA3 LINE L1 5348 5840 -315 * 632 154 19 0 chr3 138547398 138547502 -88977076 + L1PA3 LINE L1 6048 6153 -2 344 250 30 40 chr3 138547509 138547609 -88976969 + HERV16 LTR ERVL 356 454 -4542 326 156 16 0 chr3 138547739 138547803 -88976775 - MER53 DNA DNA -2 187 123 403 169 0 0 chr3 138547943 138548008 -88976570 + L1PA15 LINE L1 5990 6054 -111 307 313 0 16 chr3 138548257 138548516 -88976062 + C-rich Low_complexity Low_complexity 1 254 0 7265 122 37 4 chr3 138548834 138550010 -88974568 + L1M1 LINE L1 1543 2757 -4808 1695 139 4 33 chr3 138550016 138550290 -88974288 + AluSx SINE Alu 36 301 -11 196 325 38 0 chr3 138550292 138550372 -88974206 - L2 LINE L2 -779 2535 2453 * 535 255 138 76 chr3 138550371 138550712 -88973866 - L2 LINE L2 0 3313 2952 584 272 83 12 chr3 138550833 138551171 -88973407 + L1ME1 LINE L1 4966 5327 -819 225 0 0 0 chr3 138551173 138551198 -88973380 + (TCTCCC)n Simple_repeat Simple_repeat 1 25 0 5844 66 22 64 chr3 138551203 138552108 -88972470 + SVA Other Other 2 868 -518 185 362 110 17 chr3 138552452 138552742 -88971836 + L3b LINE CR1 1102 1418 -165 2387 81 7 0 chr3 138552798 138553093 -88971485 - AluSc SINE Alu -12 297 1 236 308 0 0 chr3 138553381 138553459 -88971119 + L1ME1 LINE L1 5701 5778 -2030 291 244 93 95 chr3 138555990 138556202 -88968376 + MIR SINE MIR 53 261 -1 7058 175 16 10 chr3 138556854 138558398 -88966180 - L1M1 LINE L1 -743 5403 3996 31 99 0 0 chr3 138558486 138558587 -88965991 + GC_rich Low_complexity Low_complexity 1 101 0 24 32 0 0 chr3 138558620 138558651 -88965927 + GC_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3 138558704 138558732 -88965846 + GC_rich Low_complexity Low_complexity 1 28 0 232 287 9 56 chr3 138559306 138559414 -88965164 - MARNA DNA Mariner -446 140 38 2064 144 0 3 chr3 138561332 138561638 -88962940 + AluSg SINE Alu 1 305 -5 720 222 155 17 chr3 138562110 138562402 -88962176 + L1ME1 LINE L1 5845 6334 0 3969 171 35 14 chr3 138563146 138563986 -88960592 - L1M1 LINE L1 -2225 3921 3065 262 220 0 0 chr3 138563990 138564040 -88960538 + L1 LINE L1 2486 2535 -3611 187 234 43 0 chr3 138564658 138564705 -88959873 - L3 LINE CR1 -3 1574 1526 798 229 55 25 chr3 138564834 138565109 -88959469 + MER113 DNA MER1_type? 54 336 -185 3775 138 24 79 chr3 138565669 138566488 -88958090 + LTR1 LTR ERV1 12 785 0 234 237 88 18 chr3 138567014 138567128 -88957450 + L1M1 LINE L1 1732 1853 -5712 2840 120 7 0 chr3 138567132 138567575 -88957003 + L1M1 LINE L1 2416 2861 -4704 * 3333 225 15 12 chr3 138567552 138568388 -88956190 + L1M1 LINE L1 3610 4459 -3106 756 149 75 0 chr3 138569212 138569346 -88955232 + MER5A DNA MER1_type 2 145 -44 867 207 36 5 chr3 138569470 138569663 -88954915 - AluJo SINE Alu -24 288 90 523 319 96 33 chr3 138570121 138570456 -88954122 + L2 LINE L2 2461 2816 -498 398 288 129 18 chr3 138570460 138570630 -88953948 - MIR SINE MIR -67 195 7 254 341 27 58 chr3 138570631 138570854 -88953724 + L2 LINE L2 2844 3059 -213 1986 127 14 0 chr3 138571227 138571511 -88953067 - AluSq SINE Alu -5 308 21 1950 189 48 16 chr3 138571511 138571951 -88952627 - L1M1 LINE L1 -6473 1092 639 1189 154 4 57 chr3 138572341 138572376 -88952202 - L1MA5 LINE L1 -130 6170 6135 2048 129 7 3 chr3 138572376 138572701 -88951877 + AluSp SINE Alu 1 326 0 1189 154 4 57 chr3 138572701 138572909 -88951669 - L1MA5 LINE L1 -165 6135 5937 3171 108 36 16 chr3 138573436 138574179 -88950399 - L1P4 LINE L1 -575 5599 4850 30 164 0 0 chr3 138574179 138574246 -88950332 + GC_rich Low_complexity Low_complexity 1 67 0 191 275 14 43 chr3 138574246 138574384 -88950194 + (CCCCG)n Simple_repeat Simple_repeat 4 137 0 21 200 0 0 chr3 138574384 138574419 -88950159 + GC_rich Low_complexity Low_complexity 1 35 0 214 211 0 28 chr3 138574652 138574723 -88949855 + G-rich Low_complexity Low_complexity 5 73 0 24 53 0 0 chr3 138574736 138574774 -88949804 + GC_rich Low_complexity Low_complexity 1 38 0 2192 168 7 82 chr3 138575006 138575434 -88949144 - MSTD LTR MaLR 0 396 1 305 303 55 34 chr3 138575452 138575690 -88948888 - L1M4c LINE L1 -4132 2589 2347 286 276 45 45 chr3 138575848 138576004 -88948574 - L1M4c LINE L1 -4444 2096 1941 44831 38 4 3 chr3 138576163 138582315 -88942263 - L1PA4 LINE L1 0 6155 1 2165 116 0 3 chr3 138582317 138582610 -88941968 - AluSc SINE Alu -17 292 1 357 233 105 8 chr3 138582610 138582743 -88941835 - L1M4c LINE L1 -4901 1641 1459 204 67 0 0 chr3 138582842 138582872 -88941706 + (A)n Simple_repeat Simple_repeat 1 30 0 689 272 100 52 chr3 138584278 138584668 -88939910 - L1ME LINE L1 -370 5751 5331 1591 178 43 16 chr3 138584668 138584972 -88939606 - AluJo SINE Alu 0 312 1 689 272 100 52 chr3 138584972 138585193 -88939385 - L1ME LINE L1 -790 5331 5122 634 253 104 18 chr3 138585422 138585643 -88938935 - L2 LINE L2 0 3313 3074 377 211 111 42 chr3 138586319 138586470 -88938108 + MIR SINE MIR 44 202 -60 21 36 0 0 chr3 138586476 138586504 -88938074 + AT_rich Low_complexity Low_complexity 1 28 0 810 295 42 7 chr3 138588702 138589072 -88935506 - L1ME4a LINE L1 -216 5905 5507 907 289 65 37 chr3 138589153 138589542 -88935036 - L1MC/D LINE L1 -744 5402 5240 2320 98 0 13 chr3 138589542 138589859 -88934719 + AluSq SINE Alu 1 313 0 907 289 65 37 chr3 138589859 138590146 -88934432 - L1MC/D LINE L1 -906 5240 4963 319 253 74 78 chr3 138590233 138590490 -88934088 - L1MC/D LINE L1 -1393 4753 4498 3979 162 27 73 chr3 138590564 138591441 -88933137 - L1MB7 LINE L1 0 6184 5348 3790 207 38 16 chr3 138591417 138592360 -88932218 - L1ME LINE L1 -1085 5061 4098 * 8115 219 22 2 chr3 138592366 138593927 -88930651 + L1M2 LINE L1 1 1593 -5256 624 118 0 0 chr3 138593927 138594012 -88930566 + AluY SINE Alu 213 297 -14 6906 169 48 41 chr3 138594013 138595644 -88928934 + L1M2 LINE L1 1586 3237 -3611 269 200 78 33 chr3 138595613 138595703 -88928875 + L1M2 LINE L1 3999 4092 -2756 * 571 100 0 0 chr3 138595700 138595780 -88928798 + L1M1 LINE L1 5545 5624 -681 869 159 159 11 chr3 138595781 138595957 -88928621 + MSTB1 LTR MaLR 226 427 -5 2926 166 64 16 chr3 138595962 138595999 -88928579 - L1 LINE L1 -2155 3991 3957 1849 171 26 3 chr3 138595999 138596304 -88928274 - AluJb SINE Alu 0 312 1 2926 166 64 16 chr3 138596304 138596874 -88927704 - L1 LINE L1 -2189 3957 3355 1125 250 20 99 chr3 138596877 138597235 -88927343 - L1M4 LINE L1 -6118 424 105 2220 96 0 0 chr3 138597235 138597553 -88927025 - AluSq SINE Alu 0 322 5 1125 250 20 99 chr3 138597553 138597637 -88926941 - L1M4 LINE L1 -6437 105 16 21699 153 18 28 chr3 138597679 138598706 -88925872 - L1MA3 LINE L1 0 7724 6689 2487 96 0 0 chr3 138598706 138599018 -88925560 - AluSx SINE Alu 0 312 1 21699 153 18 28 chr3 138599018 138602775 -88921803 - L1MA3 LINE L1 -1035 6689 2898 378 0 0 0 chr3 138602775 138602817 -88921761 + (TCTCCC)n Simple_repeat Simple_repeat 1 42 0 6500 74 22 60 chr3 138602817 138604664 -88919914 + SVA Other Other 57 1386 0 21699 153 18 28 chr3 138604664 138604755 -88919823 - L1MA3 LINE L1 -4825 2899 2809 1985 138 3 0 chr3 138604755 138605084 -88919494 - AluSx SINE Alu 0 330 1 21699 153 18 28 chr3 138605084 138605198 -88919380 - L1MA3 LINE L1 -4915 2809 2695 1811 133 4 0 chr3 138605198 138605461 -88919117 - AluSx SINE Alu -13 299 36 21699 153 18 28 chr3 138605461 138607178 -88917400 - L1MA3 LINE L1 -5029 2695 1082 2007 132 10 0 chr3 138607178 138607467 -88917111 - AluSq SINE Alu -1 312 21 21699 153 18 28 chr3 138607467 138608457 -88916121 - L1MA3 LINE L1 -6642 1082 84 3779 84 4 25 chr3 138608457 138608968 -88915610 - LTR3b LTR ERVK 0 500 1 381 143 71 0 chr3 138608968 138609038 -88915540 - L1MA3 LINE L1 -7476 89 15 377 312 87 31 chr3 138609217 138609667 -88914911 - L1 LINE L1 -2908 3238 2752 2317 34 0 11 chr3 138609715 138609982 -88914596 - L1PA4 LINE L1 0 6155 5892 2180 98 35 6 chr3 138610033 138610421 -88914157 - LTR7 LTR ERV1 0 450 1 14374 133 39 0 chr3 138610922 138613133 -88911445 - Tigger1 DNA MER2_type 0 2418 122 836 219 67 0 chr3 138613222 138613386 -88911192 + FAM SINE Alu 1 175 0 531 193 13 73 chr3 138613402 138613552 -88911026 - MER69 DNA AcHobo 0 2526 2386 365 212 15 0 chr3 138613671 138613737 -88910841 - MER69 DNA AcHobo -2459 67 1 254 304 233 43 chr3 138613740 138614129 -88910449 + L3 LINE CR1 822 1314 -263 6669 83 39 5 chr3 138614129 138615537 -88909041 + L1PA11 LINE L1 4730 6174 0 254 304 233 43 chr3 138615537 138615610 -88908968 + L3 LINE CR1 1314 1372 -205 629 211 44 49 chr3 138615613 138615817 -88908761 - L2 LINE L2 -4 3309 3107 2620 253 50 52 chr3 138615817 138616093 -88908485 + L1ME3A LINE L1 4338 4613 -1557 243 0 0 0 chr3 138616093 138616120 -88908458 + (TG)n Simple_repeat Simple_repeat 1 27 0 2620 253 50 52 chr3 138616120 138616724 -88907854 + L1ME3A LINE L1 4613 5217 -953 601 191 31 6 chr3 138616724 138616886 -88907692 + L1MA7 LINE L1 6126 6291 0 2620 253 50 52 chr3 138616886 138617157 -88907421 + L1ME3A LINE L1 5217 5487 -683 2342 89 6 16 chr3 138617157 138617472 -88907106 - AluSp SINE Alu -1 312 1 2620 253 50 52 chr3 138617472 138617969 -88906609 + L1ME3A LINE L1 5487 5990 -180 2376 73 0 0 chr3 138618283 138618569 -88906009 + AluY SINE Alu 17 302 -9 1252 112 0 0 chr3 138618569 138618738 -88905840 + AluSg/x SINE Alu 135 303 -9 1359 286 104 20 chr3 138618854 138618967 -88905611 - L2 LINE L2 -195 3118 3016 1856 100 4 0 chr3 138618967 138619207 -88905371 + AluSg SINE Alu 58 298 -12 1359 286 104 20 chr3 138619207 138619700 -88904878 - L2 LINE L2 -297 3016 2455 187 234 43 0 chr3 138620434 138620481 -88904097 - L3 LINE CR1 -3 1574 1526 1252 249 46 24 chr3 138620610 138621068 -88903510 + MER113 DNA MER1_type? 54 521 0 381 336 50 0 chr3 138621068 138621208 -88903370 + MIR SINE MIR 9 155 -107 370 303 180 45 chr3 138621223 138621490 -88903088 - L3 LINE CR1 -470 1107 805 278 250 185 0 chr3 138621653 138621761 -88902817 - MIR SINE MIR -14 248 121 272 283 66 49 chr3 138621947 138622191 -88902387 - L1ME LINE L1 -303 5818 5571 204 292 98 77 chr3 138622283 138622557 -88902021 - L2 LINE L2 -1 3271 2992 26 30 0 0 chr3 138623024 138623057 -88901521 + GC_rich Low_complexity Low_complexity 1 33 0 383 313 132 24 chr3 138625222 138625510 -88899068 - L2 LINE L2 0 3313 2995 443 306 48 121 chr3 138626123 138626577 -88898001 - L2 LINE L2 -1 3271 2851 407 282 129 18 chr3 138626583 138626753 -88897825 + MIR SINE MIR 7 195 -67 544 320 89 36 chr3 138626757 138627116 -88897462 - L2 LINE L2 -498 2816 2439 201 74 0 0 chr3 138627337 138627364 -88897214 + (TC)n Simple_repeat Simple_repeat 2 28 0 340 251 68 92 chr3 138627934 138628097 -88896481 + MIR SINE MIR 86 244 -18 746 294 10 5 chr3 138629134 138629335 -88895243 + MIR SINE MIR 2 203 -59 338 274 66 0 chr3 138629341 138629447 -88895131 + L2 LINE L2 3160 3272 0 218 200 0 0 chr3 138629447 138629487 -88895091 + (TGAA)n Simple_repeat Simple_repeat 2 41 0 318 272 44 91 chr3 138629539 138629731 -88894847 - MIR SINE MIR -62 146 20 2327 112 0 6 chr3 138630033 138630347 -88894231 - AluSx SINE Alu 0 312 1 628 269 11 5 chr3 138630709 138630895 -88893683 + L1ME LINE L1 5596 5782 -339 678 302 15 15 chr3 138630905 138631107 -88893471 + MIR SINE MIR 2 203 -59 414 333 94 6 chr3 138631420 138631579 -88892999 - MER5A DNA MER1_type 0 189 17 281 24 49 0 chr3 138631928 138631969 -88892609 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 2059 125 0 0 chr3 138631980 138632252 -88892326 - AluSx SINE Alu -40 272 1 215 200 117 17 chr3 138632655 138632715 -88891863 - MIR3 SINE MIR -27 181 116 201 312 130 0 chr3 138633048 138633125 -88891453 + L2 LINE L2 3137 3223 -49 304 170 20 30 chr3 138633679 138633779 -88890799 + CT-rich Low_complexity Low_complexity 3 101 0 604 324 66 0 chr3 138634311 138634524 -88890054 - MIR SINE MIR -14 248 22 1133 256 26 14 chr3 138634585 138634932 -88889646 + L1ME4a LINE L1 5519 5869 -252 1498 101 5 18 chr3 138635252 138635491 -88889087 - AluJb SINE Alu 0 312 84 1840 133 10 10 chr3 138635542 138635843 -88888735 - L1MA9 LINE L1 -5 6307 6007 486 287 71 28 chr3 138636944 138637268 -88887310 + L1ME1 LINE L1 5619 5956 -165 21 36 0 0 chr3 138637498 138637526 -88887052 + AT_rich Low_complexity Low_complexity 1 28 0 2194 108 16 43 chr3 138638409 138638617 -88885961 + L1MA5 LINE L1 5937 6149 -151 211 28 56 0 chr3 138638617 138638653 -88885925 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2075 125 7 3 chr3 138638655 138638942 -88885636 - AluSp SINE Alu -25 288 1 2194 108 16 43 chr3 138638942 138639100 -88885478 + L1MA5 LINE L1 6150 6296 -4 882 277 127 32 chr3 138639173 138639731 -88884847 - L1ME3A LINE L1 -208 5962 5315 7185 59 9 17 chr3 138639735 138641211 -88883367 - SVA Other Other -875 1386 2 225 0 0 0 chr3 138641216 138641241 -88883337 + (GGGAGA)n Simple_repeat Simple_repeat 1 25 0 1246 288 82 31 chr3 138641243 138642013 -88882565 - L1ME3A LINE L1 -819 5327 4519 3717 123 7 17 chr3 138642022 138642598 -88881980 - MER7C DNA MER2_type 0 602 33 5985 161 23 8 chr3 138642694 138644674 -88879904 - L1MA4 LINE L1 -2 6298 4285 614 282 12 0 chr3 138644774 138644944 -88879634 + L1ME1 LINE L1 5957 6128 -38 22 0 0 0 chr3 138644960 138644982 -88879596 + AT_rich Low_complexity Low_complexity 1 22 0 426 229 137 8 chr3 138645924 138646055 -88878523 - L1ME2 LINE L1 0 6164 6017 2251 188 120 94 chr3 138646078 138647182 -88877396 - L1ME2 LINE L1 -212 5952 4855 550 174 11 0 chr3 138647410 138647502 -88877076 - Tigger5 DNA MER2_type 0 2323 2231 290 163 0 0 chr3 138647507 138647550 -88877028 - Tigger5 DNA MER2_type -2268 55 13 445 163 35 23 chr3 138647550 138647636 -88876942 - Tigger5 DNA MER2_type 0 2323 2237 295 222 0 0 chr3 138647646 138647700 -88876878 - Tigger5 DNA MER2_type -2268 55 2 250 26 51 0 chr3 138647700 138647739 -88876839 + (TTC)n Simple_repeat Simple_repeat 1 41 0 205 393 7 0 chr3 138648448 138648598 -88875980 + (CCA)n Simple_repeat Simple_repeat 1 151 0 653 276 31 20 chr3 138649548 138649842 -88874736 + AluSx SINE Alu 6 302 -10 1113 183 45 61 chr3 138650022 138650289 -88874289 + AluJb SINE Alu 44 306 0 191 271 47 47 chr3 138650492 138650577 -88874001 - MIR3 SINE MIR -6 202 118 309 227 41 41 chr3 138650711 138650808 -88873770 - MIR SINE MIR -50 212 116 377 20 20 0 chr3 138651795 138651845 -88872733 + (CA)n Simple_repeat Simple_repeat 1 51 0 2199 135 37 6 chr3 138652539 138652866 -88871712 - MER1B DNA MER1_type 0 337 1 1922 158 10 3 chr3 138653931 138654422 -88870156 + AluSx SINE Alu 1 493 0 906 134 11 17 chr3 138654243 138654461 -88870117 + GA-rich Low_complexity Low_complexity 3 219 0 764 115 16 41 chr3 138655087 138655209 -88869369 + FRAM SINE Alu 54 172 -4 755 267 98 68 chr3 138655393 138655921 -88868657 + HAL1 LINE L1 95 638 -1869 1238 128 11 0 chr3 138655921 138656100 -88868478 + MLT1D LTR MaLR 3 183 -322 5652 178 72 64 chr3 138656105 138656300 -88868278 + L1MC4a LINE L1 6357 6549 -1259 2282 99 0 0 chr3 138656300 138656634 -88867944 - AluSq SINE Alu 0 334 1 5652 178 72 64 chr3 138656634 138656661 -88867917 + L1MC4a LINE L1 6549 6574 -1234 399 41 0 0 chr3 138656661 138656710 -88867868 + (CA)n Simple_repeat Simple_repeat 2 50 0 5652 178 72 64 chr3 138656710 138657922 -88866656 + L1MC4a LINE L1 6574 7805 -3 455 287 112 12 chr3 138659824 138660021 -88864557 + MIR SINE MIR 3 216 -46 * 740 266 43 11 chr3 138660002 138660230 -88864348 - MIR SINE MIR -13 249 19 1527 179 0 8 chr3 138660270 138660522 -88864056 + AluJo SINE Alu 1 250 -62 464 338 44 18 chr3 138660581 138660806 -88863772 + MIR SINE MIR 20 250 -12 2329 106 3 0 chr3 138661000 138661303 -88863275 - AluSx SINE Alu -8 304 1 2223 112 0 3 chr3 138661644 138661940 -88862638 - AluSg SINE Alu -15 295 1 216 0 0 0 chr3 138662669 138662693 -88861885 + (TG)n Simple_repeat Simple_repeat 2 25 0 2889 7 0 0 chr3 138662703 138663011 -88861567 - AluYb8 SINE Alu -10 308 1 878 153 86 101 chr3 138663154 138663203 -88861375 + AluJb SINE Alu 86 134 -178 2359 88 0 0 chr3 138663203 138663500 -88861078 - AluSq SINE Alu -16 297 1 878 153 86 101 chr3 138663500 138663659 -88860919 + AluJb SINE Alu 134 291 -21 2459 64 3 0 chr3 138663972 138664267 -88860311 + AluSp SINE Alu 2 297 -16 1172 210 94 94 chr3 138667228 138667394 -88857184 + MLT1C LTR MaLR 1 166 -301 2149 109 33 7 chr3 138667394 138667696 -88856882 + AluSx SINE Alu 1 310 -2 1172 210 94 94 chr3 138667696 138667996 -88856582 + MLT1C LTR MaLR 165 467 0 794 152 184 0 chr3 138668164 138668322 -88856256 + AluSc SINE Alu 2 188 -121 227 224 149 0 chr3 138669386 138669453 -88855125 - MIR3 SINE MIR -8 200 124 22 0 0 0 chr3 138670098 138670120 -88854458 + GC_rich Low_complexity Low_complexity 1 22 0 243 305 98 0 chr3 138671888 138671970 -88852608 - MIR SINE MIR -59 149 60 1622 176 0 46 chr3 138672225 138672532 -88852046 + AluJo SINE Alu 9 301 -11 285 355 28 0 chr3 138672959 138673066 -88851512 + L2 LINE L2 3202 3311 -2 546 267 80 27 chr3 138673346 138673533 -88851045 - MIR3 SINE MIR -10 198 2 234 292 113 80 chr3 138674394 138674718 -88849860 - L2 LINE L2 -1064 2250 1903 2406 68 0 0 chr3 138674718 138675011 -88849567 + AluY SINE Alu 3 295 -16 234 292 113 80 chr3 138675011 138675175 -88849403 - L2 LINE L2 -1411 1903 1746 611 26 0 13 chr3 138675323 138675401 -88849177 + (TAGA)n Simple_repeat Simple_repeat 4 80 0 548 266 90 20 chr3 138675403 138675647 -88848931 + L1ME4a LINE L1 5598 5858 -263 368 199 106 68 chr3 138675666 138675827 -88848751 + L1ME4a LINE L1 5944 6110 -11 1022 182 35 35 chr3 138675897 138676095 -88848483 + AluJo SINE Alu 97 294 -18 460 263 99 18 chr3 138676597 138676768 -88847810 + MER5A DNA MER1_type 1 185 -4 1194 166 0 0 chr3 138677138 138677345 -88847233 - AluJb SINE Alu 0 303 97 21 0 0 0 chr3 138677354 138677375 -88847203 + AT_rich Low_complexity Low_complexity 1 21 0 900 273 201 24 chr3 138677590 138678007 -88846571 + L2 LINE L2 2819 3309 -4 914 98 8 0 chr3 138678324 138678457 -88846121 + L1MB3 LINE L1 6040 6173 -10 694 235 62 12 chr3 138678479 138678641 -88845937 + MER5A DNA MER1_type 5 174 -15 259 308 58 39 chr3 138678855 138679011 -88845567 - MIR SINE MIR 0 262 104 2150 235 86 45 chr3 138679173 138679843 -88844735 + L1M4 LINE L1 23 727 -5815 2686 128 24 2 chr3 138679843 138680258 -88844320 - MSTA LTR MaLR 0 428 5 2150 235 86 45 chr3 138680258 138680324 -88844254 + L1M4 LINE L1 727 789 -5753 2065 156 29 29 chr3 138680478 138680889 -88843689 - Tigger3b DNA MER2_type -820 411 1 936 299 36 0 chr3 138681366 138681617 -88842961 + MIR SINE MIR 3 262 0 1421 68 117 0 chr3 138681696 138681902 -88842676 + MER30 DNA MER1_type 1 230 0 1095 142 37 0 chr3 138681914 138682076 -88842502 - FRAM SINE Alu -9 167 1 2262 101 7 0 chr3 138682083 138682381 -88842197 - AluSc SINE Alu -9 300 1 262 263 13 13 chr3 138682409 138682485 -88842093 + CT-rich Low_complexity Low_complexity 5 80 0 2475 206 29 33 chr3 138682756 138683480 -88841098 + L1M4 LINE L1 3336 4058 -2586 2060 144 3 7 chr3 138683480 138683786 -88840792 + AluSx SINE Alu 1 305 -7 2475 206 29 33 chr3 138683786 138683829 -88840749 + L1M4 LINE L1 4058 4100 -2544 1987 133 6 29 chr3 138683866 138684181 -88840397 + AluSx SINE Alu 5 312 0 2307 88 0 28 chr3 138685495 138685812 -88838766 + AluSq SINE Alu 1 308 -5 41 36 0 0 chr3 138686019 138686074 -88838504 + AT_rich Low_complexity Low_complexity 1 55 0 228 238 198 12 chr3 138686190 138686362 -88838216 - L1MC4a LINE L1 -1866 5942 5739 243 0 0 0 chr3 138686790 138686817 -88837761 + (T)n Simple_repeat Simple_repeat 1 27 0 30 45 0 0 chr3 138687000 138687044 -88837534 + AT_rich Low_complexity Low_complexity 1 44 0 23 68 0 0 chr3 138687096 138687140 -88837438 + AT_rich Low_complexity Low_complexity 1 44 0 26 0 0 0 chr3 138687207 138687233 -88837345 + AT_rich Low_complexity Low_complexity 1 26 0 1524 205 167 47 chr3 138687573 138688130 -88836448 - MLT1E2 LTR MaLR -2 624 1 181 222 67 0 chr3 138688259 138688304 -88836274 - L2 LINE L2 -3 3310 3263 456 269 164 10 chr3 138688922 138689130 -88835448 - L2 LINE L2 -4 3309 3070 1443 184 61 4 chr3 138689279 138689540 -88835038 + AluJo SINE Alu 9 284 -28 2243 122 3 0 chr3 138690680 138690992 -88833586 + AluSq SINE Alu 1 313 0 2433 109 100 4 chr3 138690993 138691461 -88833117 + Tigger3(Golem) DNA MER2_type 2271 2783 -246 1002 192 0 6 chr3 138691490 138691657 -88832921 - FRAM SINE Alu 0 166 1 2400 86 0 6 chr3 138691668 138691981 -88832597 - AluY SINE Alu 0 311 1 570 109 109 20 chr3 138691988 138692089 -88832489 - FLAM_C SINE Alu 0 143 34 1429 146 24 20 chr3 138692089 138692342 -88832236 + Tigger3(Golem) DNA MER2_type 2774 3027 -2 321 271 194 45 chr3 138692480 138692635 -88831943 + MER5B DNA MER1_type 1 178 0 1528 205 0 7 chr3 138692736 138693038 -88831540 + AluSx SINE Alu 1 300 -12 263 203 42 8 chr3 138694746 138694864 -88829714 + (TAGA)n Simple_repeat Simple_repeat 3 124 0 1888 181 0 6 chr3 138694954 138695268 -88829310 - AluJb SINE Alu 0 312 1 214 306 0 16 chr3 138695469 138695531 -88829047 + MIR SINE MIR 202 262 0 351 230 167 106 chr3 138695687 138696082 -88828496 - MLT1J LTR MaLR -86 425 7 400 280 170 42 chr3 138696099 138696491 -88828087 - L2 LINE L2 -83 3189 2741 1932 122 0 66 chr3 138696494 138696814 -88827764 - AluSx SINE Alu -13 299 1 198 0 0 0 chr3 138697137 138697159 -88827419 + (T)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr3 138697492 138697514 -88827064 + AT_rich Low_complexity Low_complexity 1 22 0 1155 214 143 85 chr3 138697548 138698712 -88825866 + L1MC5 LINE L1 6582 7816 -145 2513 115 5 13 chr3 138698716 138699107 -88825471 - L1PA13 LINE L1 -6 6157 5770 884 174 12 24 chr3 138699108 138699275 -88825303 - AluSg/x SINE Alu -11 301 137 2062 95 15 15 chr3 138699286 138699605 -88824973 - L1PA13 LINE L1 -379 5782 5464 2234 87 0 0 chr3 138699605 138699881 -88824697 + AluSq SINE Alu 1 276 -37 3260 65 9 2 chr3 138699882 138700316 -88824262 + L1PA7 LINE L1 5718 6154 0 2365 80 0 7 chr3 138700326 138700627 -88823951 + AluSp SINE Alu 1 299 -14 1547 141 16 32 chr3 138701430 138701890 -88822688 - L1PA13 LINE L1 -689 5472 5027 272 267 0 0 chr3 138701906 138701981 -88822597 + L1MC5 LINE L1 7820 7894 -67 33 43 0 0 chr3 138701984 138702031 -88822547 + AT_rich Low_complexity Low_complexity 1 47 0 925 174 41 55 chr3 138704666 138704884 -88819694 - MER20 DNA MER1_type -4 215 1 2046 145 0 0 chr3 138707358 138707647 -88816931 - AluJb SINE Alu -23 289 1 658 216 136 40 chr3 138707673 138707767 -88816811 - MIR SINE MIR -40 222 138 2068 135 0 16 chr3 138707767 138708079 -88816499 + AluSx SINE Alu 1 307 -5 658 216 136 40 chr3 138708079 138708183 -88816395 - MIR SINE MIR -124 138 5 207 386 69 0 chr3 138709607 138709708 -88814870 + L2 LINE L2 3180 3287 -26 207 0 0 0 chr3 138709822 138709845 -88814733 + (A)n Simple_repeat Simple_repeat 1 23 0 222 62 0 0 chr3 138710074 138710106 -88814472 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1720 156 19 47 chr3 138710137 138710457 -88814121 + AluJo SINE Alu 1 311 -1 27 0 0 0 chr3 138710637 138710664 -88813914 + AT_rich Low_complexity Low_complexity 1 27 0 360 236 157 41 chr3 138710683 138710874 -88813704 - L1ME4a LINE L1 -67 6054 5816 1853 155 3 10 chr3 138710874 138711171 -88813407 - AluJb SINE Alu -17 295 1 360 236 157 41 chr3 138711171 138711272 -88813306 - L1ME4a LINE L1 -305 5816 5728 28 0 0 78 chr3 138711699 138711750 -88812828 + AT_rich Low_complexity Low_complexity 1 47 0 63 87 0 0 chr3 138712269 138712430 -88812148 + AT_rich Low_complexity Low_complexity 1 161 0 2153 123 0 16 chr3 138712592 138712902 -88811676 + AluSx SINE Alu 1 305 -7 2006 143 0 0 chr3 138713171 138713457 -88811121 - AluSx SINE Alu -26 286 1 953 178 31 79 chr3 138713518 138713652 -88810926 - L1MC4 LINE L1 -141 7901 7762 1929 149 0 16 chr3 138713652 138713961 -88810617 + AluJo SINE Alu 2 305 -7 953 178 31 79 chr3 138713961 138714070 -88810508 - L1MC4 LINE L1 -280 7762 7672 887 194 12 0 chr3 138714070 138714235 -88810343 + FAM SINE Alu 1 167 -8 953 178 31 79 chr3 138714235 138714282 -88810296 - L1MC4 LINE L1 -370 7672 7624 3548 182 27 32 chr3 138714283 138715100 -88809478 - L1MB8 LINE L1 -3 6175 5363 295 185 0 15 chr3 138715100 138715165 -88809413 - MADE1 DNA Mariner 0 80 17 2822 100 18 48 chr3 138715166 138715277 -88809301 - MSTC LTR MaLR 0 428 315 2147 116 14 3 chr3 138715277 138715571 -88809007 + AluSq SINE Alu 1 297 -16 2822 100 18 48 chr3 138715571 138715900 -88808678 - MSTC LTR MaLR -113 315 1 4910 222 42 3 chr3 138715900 138717141 -88807437 - L1MB8 LINE L1 -876 5270 3982 27 0 0 0 chr3 138717753 138717780 -88806798 + AT_rich Low_complexity Low_complexity 1 27 0 246 292 118 51 chr3 138718053 138718231 -88806347 + MIR SINE MIR 59 248 -14 272 159 0 0 chr3 138718456 138718500 -88806078 - Alu SINE Alu -258 44 1 2129 240 92 13 chr3 138723878 138724574 -88800004 + L1M4 LINE L1 3208 3958 -2188 1078 165 142 25 chr3 138724568 138724582 -88799996 + L1M4 LINE L1 4364 4375 -1771 * 2221 102 16 0 chr3 138724582 138724886 -88799692 + AluSq SINE Alu 1 309 -4 1078 165 142 25 chr3 138724886 138725187 -88799391 + L1M4 LINE L1 4375 4716 -1430 1815 146 30 20 chr3 138725530 138725825 -88798753 - AluSx SINE Alu -14 298 1 21 0 0 0 chr3 138726022 138726043 -88798535 + AT_rich Low_complexity Low_complexity 1 21 0 2290 117 0 0 chr3 138726161 138726470 -88798108 - AluSg SINE Alu -1 309 1 1938 121 14 4 chr3 138727168 138727448 -88797130 + AluSx SINE Alu 2 284 -28 2282 104 0 3 chr3 138728308 138728607 -88795971 - AluSx SINE Alu -14 298 1 215 250 23 157 chr3 138729406 138729489 -88795089 + MIR3 SINE MIR 56 148 -60 361 58 0 0 chr3 138729489 138729541 -88795037 - L1MA7 LINE L1 -4 6287 6236 215 250 23 157 chr3 138729541 138729552 -88795026 + MIR3 SINE MIR 148 159 -49 192 40 0 0 chr3 138729552 138729577 -88795001 + (CA)n Simple_repeat Simple_repeat 2 26 0 215 250 23 157 chr3 138729577 138729653 -88794925 + MIR3 SINE MIR 159 204 -4 6480 134 48 16 chr3 138729935 138730973 -88793605 + MER11C LTR ERVK 1 1071 0 1955 148 0 7 chr3 138731151 138731449 -88793129 - AluSx SINE Alu -16 296 1 1164 145 31 24 chr3 138732405 138732749 -88791829 + MSTA LTR MaLR 1 391 -37 2448 88 3 0 chr3 138732749 138733055 -88791523 - AluSp SINE Alu -6 307 1 1164 145 31 24 chr3 138733055 138733094 -88791484 + MSTA LTR MaLR 391 428 0 1444 194 20 47 chr3 138733559 138733858 -88790720 - AluJo SINE Alu -21 291 1 235 338 107 107 chr3 138734441 138734888 -88789690 - L2 LINE L2 -1 3271 2825 221 272 154 19 chr3 138735116 138735278 -88789300 - L2 LINE L2 -787 2527 2344 2227 101 3 3 chr3 138735972 138736270 -88788308 - AluSx SINE Alu -14 298 1 193 276 122 24 chr3 138737024 138737147 -88787431 - L3b LINE CR1 -322 1261 1127 19791 165 110 24 chr3 138737205 138737899 -88786679 + L1P LINE L1 11 644 -5502 5770 168 26 33 chr3 138737899 138738973 -88785605 - MER11C LTR ERVK 0 1071 5 19791 165 110 24 chr3 138738973 138742262 -88782316 + L1P LINE L1 644 4336 -1810 7155 60 27 5 chr3 138742271 138743152 -88781426 + L1PA6 LINE L1 5254 6154 0 197 351 84 39 chr3 138743177 138743331 -88781247 - L3 LINE CR1 -515 1062 902 2058 88 25 4 chr3 138744561 138744692 -88779886 + L1PB1 LINE L1 5255 5382 -769 2462 75 0 3 chr3 138744692 138744997 -88779581 + AluSq SINE Alu 1 304 -9 2058 88 25 4 chr3 138744997 138745548 -88779030 + L1PB1 LINE L1 5382 6151 0 261 211 0 19 chr3 138745548 138745600 -88778978 - Charlie1 DNA MER1_type -2710 51 1 1804 147 103 6 chr3 138748039 138748380 -88776198 - L1PB4 LINE L1 0 6156 5783 201 213 0 0 chr3 138748380 138748427 -88776151 + (TATG)n Simple_repeat Simple_repeat 3 49 0 2348 117 58 57 chr3 138748462 138748761 -88775817 - L1PB4 LINE L1 -366 5790 5485 1985 121 28 0 chr3 138748761 138749043 -88775535 - AluSx SINE Alu -22 290 1 2348 117 58 57 chr3 138749043 138749230 -88775348 - L1PB4 LINE L1 -671 5485 5300 2150 105 10 3 chr3 138750513 138750807 -88773771 + AluSx SINE Alu 1 296 -16 876 148 7 7 chr3 138751240 138751389 -88773189 - Tigger7 DNA MER2_type 0 2491 2343 294 165 196 10 chr3 138751378 138751475 -88773103 - Tigger7 DNA MER2_type -196 354 240 * 24 32 0 0 chr3 138752003 138752034 -88772544 + GC_rich Low_complexity Low_complexity 1 31 0 238 178 0 0 chr3 138752530 138752575 -88772003 - MER5B DNA MER1_type -7 171 127 589 278 118 35 chr3 138752575 138752888 -88771690 + L1MC/D LINE L1 5327 5665 -2143 456 287 52 70 chr3 138753779 138754051 -88770527 + L3 LINE CR1 1244 1510 -67 478 243 61 77 chr3 138754579 138754760 -88769818 + MIR3 SINE MIR 21 198 -10 2143 105 0 14 chr3 138755199 138755531 -88769047 + AluSg SINE Alu 1 328 0 1729 174 10 7 chr3 138755962 138756260 -88768318 + AluJb SINE Alu 1 299 -13 525 214 43 7 chr3 138756263 138756403 -88768175 + L1MC4 LINE L1 7775 7919 -123 263 191 15 0 chr3 138756422 138756490 -88768088 + GA-rich Low_complexity Low_complexity 3 71 0 543 203 8 31 chr3 138756493 138756621 -88767957 + L1MC4 LINE L1 7918 8042 0 590 217 54 31 chr3 138758055 138758184 -88766394 + FLAM_A SINE Alu 2 133 0 664 272 69 5 chr3 138759670 138759872 -88764706 - MIR SINE MIR -2 260 46 315 282 122 9 chr3 138759900 138760070 -88764508 - MIR SINE MIR -12 250 6 1682 161 0 21 chr3 138761457 138761743 -88762835 + AluJo SINE Alu 6 285 -27 4172 123 24 78 chr3 138762383 138763201 -88761377 - LTR1 LTR ERV1 0 785 12 414 300 19 31 chr3 138763862 138764022 -88760556 + MER5A DNA MER1_type 13 170 -19 1651 122 7 30 chr3 138765163 138765433 -88759145 - AluSx SINE Alu -9 303 40 325 274 107 61 chr3 138765548 138765606 -88758972 + MIR SINE MIR 17 71 -191 2298 97 3 0 chr3 138765606 138765905 -88758673 - AluSx SINE Alu -10 302 3 325 274 107 61 chr3 138765905 138766037 -88758541 + MIR SINE MIR 71 216 -46 21 0 0 0 chr3 138766229 138766250 -88758328 + AT_rich Low_complexity Low_complexity 1 21 0 1861 135 30 0 chr3 138766573 138766870 -88757708 - AluSx SINE Alu -6 306 1 520 238 33 51 chr3 138768319 138768592 -88755986 + AluSx SINE Alu 37 304 -8 1571 179 116 66 chr3 138768596 138768740 -88755838 + L1PB4 LINE L1 5684 5819 -347 1887 144 3 23 chr3 138768740 138769046 -88755532 + AluSq SINE Alu 3 302 -11 1571 179 116 66 chr3 138769046 138769307 -88755271 + L1PB4 LINE L1 5819 6118 -48 1927 140 11 7 chr3 138769307 138769593 -88754985 + AluSg SINE Alu 4 290 -20 1571 179 116 66 chr3 138769593 138769645 -88754933 + L1PB4 LINE L1 6118 6166 0 547 256 254 60 chr3 138769656 138769969 -88754609 - L2 LINE L2 -955 2359 1945 1507 195 43 0 chr3 138769969 138770246 -88754332 + AluJo SINE Alu 1 289 -23 547 256 254 60 chr3 138770246 138770346 -88754232 - L2 LINE L2 -1369 1945 1866 361 310 103 0 chr3 138770499 138770615 -88753963 - L2 LINE L2 -589 2725 2598 2105 174 21 3 chr3 138770823 138771163 -88753415 - MER7A DNA MER2_type -1 345 2 814 233 53 16 chr3 138771225 138771414 -88753164 - MER3 DNA MER1_type -12 197 2 22 0 0 0 chr3 138771840 138771862 -88752716 + AT_rich Low_complexity Low_complexity 1 22 0 6159 193 88 13 chr3 138771889 138774368 -88750210 + L1MB7 LINE L1 3498 6184 0 318 336 26 0 chr3 138775378 138775491 -88749087 + L1MC4a LINE L1 5815 5930 -1878 186 43 0 0 chr3 138775516 138775539 -88749039 + (TG)n Simple_repeat Simple_repeat 2 24 0 2477 80 0 0 chr3 138775545 138775846 -88748732 - AluSc SINE Alu -8 301 1 2143 115 7 0 chr3 138775847 138776134 -88748444 - AluSg SINE Alu -21 289 1 515 209 186 0 chr3 138776222 138776351 -88748227 + MER5A DNA MER1_type 32 184 -5 1470 181 49 36 chr3 138776765 138776879 -88747699 + AluJb SINE Alu 5 116 -196 180 0 0 0 chr3 138776879 138776899 -88747679 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 1470 181 49 36 chr3 138776899 138777088 -88747490 + AluJb SINE Alu 116 312 0 491 202 96 79 chr3 138777749 138778041 -88746537 - L1MC5 LINE L1 -15 7946 7650 697 256 41 27 chr3 138778066 138778285 -88746293 + L2 LINE L2 2356 2577 -737 842 167 0 33 chr3 138778285 138778460 -88746118 - AluJb SINE Alu 0 306 137 719 312 47 50 chr3 138778460 138778773 -88745805 + L2 LINE L2 2975 3288 -25 2156 134 33 15 chr3 138778773 138779109 -88745469 - MER2 DNA MER2_type 0 344 3 719 312 47 50 chr3 138779109 138779135 -88745443 + L2 LINE L2 3288 3313 0 2018 259 13 17 chr3 138779701 138780231 -88744347 + L1ME1 LINE L1 5601 6128 -38 22 0 0 0 chr3 138780247 138780269 -88744309 + AT_rich Low_complexity Low_complexity 1 22 0 1056 223 144 14 chr3 138782027 138782319 -88742259 + Tigger7 DNA MER2_type 2 331 -2156 4217 138 4 6 chr3 138782470 138783180 -88741398 - L1P LINE L1 -3299 2847 2139 1625 165 21 7 chr3 138784913 138785204 -88739374 - AluJb SINE Alu -17 295 1 2093 125 20 3 chr3 138785484 138785789 -88738789 - AluSg SINE Alu 0 310 1 626 208 33 8 chr3 138786316 138786436 -88738142 + MER2 DNA MER2_type 223 345 0 343 248 120 0 chr3 138786436 138786553 -88738025 - L1ME4a LINE L1 -24 6097 5967 748 118 92 33 chr3 138786580 138786732 -88737846 + L1PA5 LINE L1 5994 6154 0 218 250 18 18 chr3 138787187 138787243 -88737335 + L3 LINE CR1 1520 1575 -2 482 215 192 40 chr3 138787682 138787859 -88736719 - MER63A DNA MER1_type -4 206 3 282 191 170 11 chr3 138788292 138788386 -88736192 + MER103 DNA DNA 57 165 -1 320 333 44 0 chr3 138790015 138790129 -88734449 - L2 LINE L2 -9 3263 3145 401 264 75 0 chr3 138790194 138790300 -88734278 - L2 LINE L2 0 3313 3200 326 297 87 97 chr3 138790360 138790555 -88734023 + L2 LINE L2 3080 3272 0 323 284 214 20 chr3 138790926 138791127 -88733451 - MLT1J LTR MaLR -46 465 226 211 289 157 25 chr3 138791671 138791792 -88732786 + MIR SINE MIR 120 256 -6 247 224 53 66 chr3 138791828 138791904 -88732674 - L2 LINE L2 -5 3267 3193 270 219 55 14 chr3 138791975 138792048 -88732530 + L2 LINE L2 3139 3214 -58 436 278 135 8 chr3 138792463 138792596 -88731982 + MER91A DNA MER1_type 22 171 -25 234 311 107 51 chr3 138792629 138792806 -88731772 - L2 LINE L2 -244 3028 2842 391 237 82 0 chr3 138792894 138792991 -88731587 - MIR SINE MIR -145 117 13 240 388 0 0 chr3 138793016 138793096 -88731482 - L2 LINE L2 -645 2669 2590 1654 192 3 19 chr3 138793096 138793413 -88731165 + AluJb SINE Alu 1 312 0 822 156 11 22 chr3 138793429 138793608 -88730970 + GA-rich Low_complexity Low_complexity 3 179 0 419 336 138 29 chr3 138793647 138794061 -88730517 - L2 LINE L2 -711 2603 2145 2138 133 0 3 chr3 138794325 138794627 -88729951 - AluSq SINE Alu -12 301 1 180 111 0 0 chr3 138795875 138795902 -88728676 + (T)n Simple_repeat Simple_repeat 1 27 0 635 338 79 15 chr3 138795964 138796355 -88728223 - L3 LINE CR1 -155 1422 1007 31 44 0 0 chr3 138796703 138796748 -88727830 + AT_rich Low_complexity Low_complexity 1 45 0 243 170 140 70 chr3 138797152 138797252 -88727326 - L1ME4a LINE L1 -16 6105 5999 372 248 131 56 chr3 138797589 138797692 -88726886 - MIR SINE MIR -15 247 153 2202 125 0 10 chr3 138797692 138798005 -88726573 - AluSx SINE Alu -2 310 1 372 248 131 56 chr3 138798005 138798115 -88726463 - MIR SINE MIR -109 153 18 302 208 43 0 chr3 138799232 138799328 -88725250 + L1ME1 LINE L1 5691 5793 -328 23 54 0 0 chr3 138799359 138799396 -88725182 + AT_rich Low_complexity Low_complexity 1 37 0 180 0 0 0 chr3 138799443 138799463 -88725115 + (T)n Simple_repeat Simple_repeat 1 20 0 799 232 12 6 chr3 138799852 138800016 -88724562 - MER5B DNA MER1_type -13 165 1 1955 40 0 0 chr3 138800713 138800937 -88723641 - AluY SINE Alu -11 300 77 952 44 0 0 chr3 138801674 138801787 -88722791 + L1PA5 LINE L1 6042 6154 0 195 42 0 0 chr3 138802567 138802591 -88721987 + (CTCA)n Simple_repeat Simple_repeat 4 27 0 291 244 93 95 chr3 138804346 138804558 -88720020 + MIR SINE MIR 53 261 -1 426 310 76 14 chr3 138805474 138805619 -88718959 - MLT1K LTR MaLR -415 173 20 263 295 248 0 chr3 138806534 138806639 -88717939 + L2 LINE L2 3142 3272 0 378 241 11 0 chr3 138806702 138806789 -88717789 - MLT1K LTR MaLR -355 233 146 789 148 0 0 chr3 138807504 138807626 -88716952 - AluSg/x SINE Alu -2 310 189 2088 141 0 3 chr3 138807807 138808113 -88716465 + AluSg SINE Alu 1 305 -5 720 222 155 17 chr3 138808584 138808876 -88715702 + L1ME1 LINE L1 5845 6334 0 666 274 59 39 chr3 138809114 138809369 -88715209 + MIR SINE MIR 3 262 0 301 355 19 9 chr3 138809370 138809477 -88715101 - MIR SINE MIR -67 141 34 316 296 0 41 chr3 138809715 138809813 -88714765 + L2 LINE L2 3220 3313 0 5348 231 43 26 chr3 138810312 138810930 -88713648 - L1M4 LINE L1 -1996 4150 3544 2137 128 0 0 chr3 138810930 138811226 -88713352 - AluSx SINE Alu -16 296 1 5348 231 43 26 chr3 138811226 138812158 -88712420 - L1M4 LINE L1 -2602 3544 2574 226 369 70 25 chr3 138812289 138812446 -88712132 - L2 LINE L2 -2 3270 3107 3484 166 58 12 chr3 138812667 138813176 -88711402 - L1MB8 LINE L1 0 6178 5633 315 0 0 0 chr3 138813176 138813211 -88711367 + (CA)n Simple_repeat Simple_repeat 1 35 0 3484 166 58 12 chr3 138813211 138813341 -88711237 - L1MB8 LINE L1 -545 5633 5510 191 288 144 30 chr3 138813728 138813860 -88710718 + L2 LINE L2 3165 3311 -2 810 231 20 10 chr3 138814365 138814560 -88710018 + MIR SINE MIR 60 256 -6 930 122 7 14 chr3 138815704 138815843 -88708735 + AluJo SINE Alu 1 138 -174 414 246 127 8 chr3 138816081 138816207 -88708371 + MIR SINE MIR 84 224 -38 369 241 0 47 chr3 138816711 138816865 -88707713 - MER91B DNA MER1_type 0 190 1 346 325 34 10 chr3 138817522 138817671 -88706907 + MER20B DNA MER1_type 63 219 0 2211 116 7 0 chr3 138818128 138818431 -88706147 - AluSx SINE Alu -7 305 1 418 314 43 38 chr3 138819344 138819529 -88705049 - MIR3 SINE MIR -21 187 2 331 208 99 40 chr3 138819820 138819921 -88704657 + MIR SINE MIR 3 109 -153 1205 272 91 35 chr3 138819947 138820407 -88704171 + MLT1J LTR MaLR 4 489 -22 670 287 47 32 chr3 138820419 138820760 -88703818 + L1M4 LINE L1 3611 3956 -2190 2032 90 25 11 chr3 138820876 138821153 -88703425 - L1PA10 LINE L1 -2 6166 5886 2353 109 15 0 chr3 138821154 138821493 -88703085 + L1P LINE L1 3849 4192 -1954 192 77 0 0 chr3 138821665 138821691 -88702887 + (TTCCC)n Simple_repeat Simple_repeat 5 30 0 236 244 106 49 chr3 138822196 138822251 -88702327 + L1M4b LINE L1 94 144 -6715 209 30 61 0 chr3 138822251 138822284 -88702294 + T-rich Low_complexity Low_complexity 2 36 0 236 244 106 49 chr3 138822284 138822351 -88702227 + L1M4b LINE L1 144 223 -6636 1212 262 72 19 chr3 138822360 138822886 -88701692 - L1M4 LINE L1 -1877 4269 3716 228 200 0 0 chr3 138822936 138822986 -88701592 + (TG)n Simple_repeat Simple_repeat 2 51 0 208 256 239 0 chr3 138823710 138823827 -88700751 + MIR SINE MIR 113 257 -5 183 211 0 0 chr3 138823795 138823833 -88700745 + L2 LINE L2 3271 3308 -5 * 663 246 60 0 chr3 138823878 138824045 -88700533 - MIR SINE MIR -64 198 22 200 304 87 0 chr3 138824049 138824118 -88700460 + L2 LINE L2 3198 3272 0 22 0 0 0 chr3 138824363 138824385 -88700193 + AT_rich Low_complexity Low_complexity 1 22 0 185 247 35 82 chr3 138824655 138824740 -88699838 + L2 LINE L2 1404 1484 -1830 967 259 0 29 chr3 138827335 138827578 -88697000 + MIR SINE MIR 27 262 0 2167 203 34 32 chr3 138829045 138829548 -88695030 + MLT1D LTR MaLR 2 505 0 1862 140 6 22 chr3 138830878 138831192 -88693386 + AluJb SINE Alu 1 309 -3 6717 26 0 0 chr3 138831813 138832579 -88691999 - L1PA4 LINE L1 0 6155 5390 1846 169 0 3 chr3 138832975 138833270 -88691308 + AluJb SINE Alu 1 294 -18 22 0 0 0 chr3 138833359 138833381 -88691197 + AT_rich Low_complexity Low_complexity 1 22 0 453 306 21 0 chr3 138833452 138833596 -88690982 - LTR67 LTR ERVL -4 553 407 1508 134 17 13 chr3 138834282 138834521 -88690057 + LTR32 LTR ERVL 232 471 0 287 199 61 84 chr3 138834535 138834666 -88689912 + L1ME4a LINE L1 5971 6098 -23 497 206 0 48 chr3 138834750 138834876 -88689702 - L1MC4 LINE L1 -1 8041 7922 504 243 30 55 chr3 138834912 138835114 -88689464 + L1MC5 LINE L1 7729 7925 -36 237 196 0 0 chr3 138835967 138836018 -88688560 + GA-rich Low_complexity Low_complexity 3 53 0 1942 188 78 36 chr3 138837065 138837511 -88687067 + MER31B LTR ERV1 2 466 0 2034 55 0 16 chr3 138838534 138838791 -88685787 + AluY SINE Alu 27 279 -32 1181 175 75 51 chr3 138839002 138839441 -88685137 + MLT1D LTR MaLR 4 495 -10 205 235 210 0 chr3 138839453 138839534 -88685044 + MIR3 SINE MIR 102 199 -9 495 48 0 0 chr3 138839773 138839835 -88684743 + (TAGA)n Simple_repeat Simple_repeat 1 62 0 420 302 65 8 chr3 138839933 138840178 -88684400 + L1MC4 LINE L1 7712 7970 -72 63 87 0 0 chr3 138840899 138841060 -88683518 + AT_rich Low_complexity Low_complexity 1 161 0 2147 123 0 16 chr3 138841222 138841532 -88683046 + AluSx SINE Alu 1 305 -7 1491 148 30 70 chr3 138841801 138842099 -88682479 - AluJo SINE Alu -26 286 1 975 265 7 25 chr3 138842783 138843029 -88681549 + L1MC4 LINE L1 6785 7027 -1015 6552 101 40 10 chr3 138843029 138843977 -88680601 - L1PA13 LINE L1 -5 6158 5199 975 265 7 25 chr3 138843977 138844013 -88680565 + L1MC4 LINE L1 7027 7062 -980 530 256 28 11 chr3 138844056 138844232 -88680346 + L1MC5 LINE L1 6961 7139 -822 351 171 57 23 chr3 138844272 138844360 -88680218 + L1MA10 LINE L1 6241 6331 -3 24 53 0 0 chr3 138844471 138844509 -88680069 + AT_rich Low_complexity Low_complexity 1 38 0 568 243 80 130 chr3 138844531 138845091 -88679487 + L1 LINE L1 4206 4792 -1354 2107 113 30 7 chr3 138845091 138845393 -88679185 + AluSx SINE Alu 1 309 -3 568 243 80 130 chr3 138845393 138845659 -88678919 + L1 LINE L1 4792 5070 -1076 1798 170 3 7 chr3 138845659 138845965 -88678613 + AluJo SINE Alu 3 307 -5 568 243 80 130 chr3 138845965 138846015 -88678563 + L1 LINE L1 5070 5121 -1025 2208 96 48 0 chr3 138846015 138846308 -88678270 + AluSg SINE Alu 1 307 -3 568 243 80 130 chr3 138846308 138846511 -88678067 + L1 LINE L1 5121 5233 -913 211 384 29 43 chr3 138847368 138847506 -88677072 + MIR3 SINE MIR 1 136 -72 1450 170 60 89 chr3 138847521 138847573 -88677005 - MER58B DNA MER1_type -2079 341 289 860 214 7 0 chr3 138847573 138847727 -88676851 + FRAM SINE Alu 1 155 -11 1450 170 60 89 chr3 138847727 138848021 -88676557 - MER58B DNA MER1_type -2131 289 5 2539 176 39 149 chr3 138849825 138850381 -88674197 + LTR8 LTR ERV1 1 617 -74 2339 93 0 0 chr3 138850381 138850670 -88673908 + AluSc SINE Alu 1 289 -20 2539 176 39 149 chr3 138850670 138850725 -88673853 + LTR8 LTR ERV1 617 511 -180 2249 64 64 0 chr3 138850725 138851006 -88673572 + AluSp SINE Alu 2 300 -13 2539 176 39 149 chr3 138851006 138851170 -88673408 + LTR8 LTR ERV1 510 691 0 256 125 0 0 chr3 138851170 138851210 -88673368 + L1ME4a LINE L1 6079 6118 -3 552 98 0 12 chr3 138851893 138851975 -88672603 - MLT1C LTR MaLR -386 81 1 456 371 109 2 chr3 138852082 138852502 -88672076 - L2 LINE L2 -493 2821 2357 674 210 78 43 chr3 138852815 138853056 -88671522 - MIR SINE MIR -12 250 1 224 329 0 0 chr3 138853377 138853462 -88671116 + (CGAG)n Simple_repeat Simple_repeat 2 86 0 237 254 34 51 chr3 138853487 138853664 -88670914 + (CGGG)n Simple_repeat Simple_repeat 2 175 0 213 158 35 53 chr3 138853691 138853748 -88670830 + G-rich Low_complexity Low_complexity 3 58 0 202 259 0 0 chr3 138853858 138853912 -88670666 + G-rich Low_complexity Low_complexity 1 54 0 213 43 64 21 chr3 138853959 138854006 -88670572 + G-rich Low_complexity Low_complexity 2 50 0 369 267 0 22 chr3 138854295 138854385 -88670193 - MER91B DNA MER1_type 0 190 103 205 191 0 85 chr3 138854402 138854449 -88670129 + MER91 DNA MER1_type 98 140 0 4394 183 31 16 chr3 138854894 138855846 -88668732 - L1 LINE L1 -2115 4031 3065 2597 186 19 60 chr3 138855850 138856437 -88668141 + L1 LINE L1 2486 3048 -3098 591 225 8 8 chr3 138856573 138856702 -88667876 - L1 LINE L1 -3526 2620 2492 370 192 0 0 chr3 138856719 138856792 -88667786 + L1 LINE L1 2976 3048 -3098 674 278 88 50 chr3 138856872 138856930 -88667648 - L1M4 LINE L1 -1810 4336 4282 470 198 226 0 chr3 138856930 138857036 -88667542 - FLAM_A SINE Alu -3 130 1 674 278 88 50 chr3 138857036 138857376 -88667202 - L1M4 LINE L1 -1864 4282 3923 755 146 215 19 chr3 138857759 138857917 -88666661 - MER5A DNA MER1_type 0 189 1 12964 118 18 13 chr3 138857952 138858060 -88666518 + L1PA10 LINE L1 3511 3617 -2551 2358 126 42 22 chr3 138858060 138858417 -88666161 - THE1B LTR MaLR 0 364 1 12964 118 18 13 chr3 138858417 138860128 -88664450 + L1PA10 LINE L1 3617 5338 -830 1798 174 0 25 chr3 138860128 138860444 -88664134 + AluSx SINE Alu 1 308 -4 12964 118 18 13 chr3 138860444 138861274 -88663304 + L1PA10 LINE L1 5338 6163 -5 2451 87 0 0 chr3 138861346 138861644 -88662934 - AluSp SINE Alu -15 298 1 237 305 189 0 chr3 138861767 138861931 -88662647 - L3 LINE CR1 -2 1575 1381 430 301 124 35 chr3 138861960 138862306 -88662272 - L3 LINE CR1 -160 1417 1041 306 295 8 47 chr3 138863920 138864049 -88660529 - MARNA DNA Mariner -38 548 425 241 271 34 0 chr3 138864268 138864327 -88660251 - HAL1b LINE L1 -90 1258 1198 394 284 102 30 chr3 138864329 138864526 -88660052 - MARNA DNA Mariner -198 388 178 297 265 106 29 chr3 138864651 138864821 -88659757 + MIR SINE MIR 80 262 0 313 229 144 8 chr3 138865303 138865421 -88659157 + MIR SINE MIR 129 262 0 731 273 42 83 chr3 138865609 138865811 -88658767 - L2 LINE L2 0 3313 3135 1797 137 27 10 chr3 138865811 138866103 -88658475 - AluJo SINE Alu -15 297 1 731 273 42 83 chr3 138866103 138866310 -88658268 - L2 LINE L2 -178 3135 2921 280 229 131 33 chr3 138866425 138866547 -88658031 + MIR SINE MIR 129 262 0 630 326 56 42 chr3 138866631 138866956 -88657622 - L2 LINE L2 -448 2866 2532 2230 78 3 33 chr3 138866956 138867263 -88657315 + AluSc SINE Alu 1 298 -11 630 326 56 42 chr3 138867263 138867345 -88657233 - L2 LINE L2 -782 2532 2453 * 817 272 188 48 chr3 138867344 138867995 -88656583 - L2 LINE L2 0 3313 2565 2207 111 3 0 chr3 138869395 138869684 -88654894 + AluSx SINE Alu 2 291 -21 304 260 128 44 chr3 138870405 138870553 -88654025 + MIR SINE MIR 33 191 -71 12845 201 25 19 chr3 138871122 138874485 -88650093 + L1P4 LINE L1 2326 5701 -465 223 283 0 17 chr3 138875514 138875574 -88649004 - L2 LINE L2 -52 3261 3203 342 338 8 0 chr3 138875932 138876065 -88648513 + MIR3 SINE MIR 74 207 -1 2357 172 50 7 chr3 138876087 138876547 -88648031 + MER90 LTR ERV1 1 480 -95 267 261 148 0 chr3 138876583 138876671 -88647907 + MER96 DNA MER1_type? 73 173 -2 975 250 32 0 chr3 138877452 138877668 -88646910 - MER58A DNA MER1_type -1 223 1 1081 196 10 5 chr3 138878885 138879084 -88645494 + AluJo SINE Alu 89 288 -24 706 149 75 0 chr3 138879208 138879342 -88645236 - MER5A DNA MER1_type -44 145 2 2149 120 17 0 chr3 138880396 138880688 -88643890 - AluSc SINE Alu -12 297 1 675 289 39 1 chr3 138880754 138880987 -88643591 + L1ME3A LINE L1 5718 5949 -221 961 233 66 0 chr3 138881037 138881265 -88643313 + L1ME3A LINE L1 5463 5705 -465 10866 163 17 13 chr3 138881269 138883097 -88641481 + L1MA2 LINE L1 19 1853 -5712 3053 100 5 0 chr3 138883098 138883546 -88641032 + L1MA2 LINE L1 2412 2861 -4704 * 16472 158 11 6 chr3 138883540 138887616 -88636962 + L1MA2 LINE L1 3628 7723 0 1399 201 161 10 chr3 138887621 138888005 -88636573 + L1ME3A LINE L1 5688 6129 -41 376 242 87 47 chr3 138888428 138888577 -88636001 + MIR SINE MIR 105 259 -3 211 285 171 0 chr3 138889127 138889250 -88635328 + MIR3 SINE MIR 1 144 -64 337 336 22 7 chr3 138889908 138890045 -88634533 - MIR3 SINE MIR -17 191 53 2124 141 0 13 chr3 138890103 138890407 -88634171 - AluSx SINE Alu -12 300 1 207 250 0 0 chr3 138890513 138890557 -88634021 - L3 LINE CR1 -10 1567 1524 228 288 22 65 chr3 138891561 138891700 -88632878 + L1ME LINE L1 5778 5910 -211 287 322 35 9 chr3 138891822 138891937 -88632641 - MIR3 SINE MIR -84 124 7 889 181 7 0 chr3 138892088 138892243 -88632335 - L1PA16 LINE L1 -3 6163 6008 7180 124 79 29 chr3 138892243 138893467 -88631111 + pTR5 LTR ERV1 741 2025 -413 379 177 14 46 chr3 138893469 138893578 -88631000 + LTR30 LTR ERV1 375 478 -91 1123 171 16 5 chr3 138993596 138993783 -88530795 + AluJb SINE Alu 111 299 -13 585 283 147 67 chr3 138993787 138994462 -88530116 + L2 LINE L2 1894 2622 -692 1020 72 58 0 chr3 138994465 138994655 -88529923 - AluY SINE Alu 0 333 136 3045 84 40 46 chr3 138994756 138995210 -88529368 + L1PA8 LINE L1 5713 6163 -9 2111 139 17 0 chr3 138995891 138996186 -88528392 + AluSx SINE Alu 6 305 -7 185 349 0 58 chr3 138996727 138996813 -88527765 - MIR3 SINE MIR -3 205 125 2169 75 0 34 chr3 138997298 138997591 -88526987 + AluY SINE Alu 29 311 0 1995 154 3 6 chr3 138997655 138997967 -88526611 + AluJb SINE Alu 1 311 -1 2237 102 3 0 chr3 138997998 138998306 -88526272 + AluSp SINE Alu 3 311 0 417 101 121 121 chr3 138998325 138998371 -88526207 + L1ME4a LINE L1 5972 6017 -104 2266 88 3 23 chr3 138998371 138998679 -88525899 + AluSq SINE Alu 1 302 -11 417 101 121 121 chr3 138998679 138998781 -88525797 + L1ME4a LINE L1 6016 6120 -1 535 333 76 13 chr3 138998960 138999197 -88525381 - L2 LINE L2 -44 3228 2977 252 346 85 43 chr3 138999190 138999401 -88525177 - L2 LINE L2 -453 2861 2642 * 315 0 0 0 chr3 138999699 138999734 -88524844 + (TG)n Simple_repeat Simple_repeat 1 35 0 348 186 0 0 chr3 139000094 139000153 -88524425 + L2 LINE L2 3205 3263 -9 252 315 0 0 chr3 139001517 139001590 -88522988 + MIR SINE MIR 189 261 -1 1879 154 14 81 chr3 139001748 139002118 -88522460 + MER47B DNA MER2_type 2 346 -72 1789 158 7 35 chr3 139002982 139003292 -88521286 + AluJo SINE Alu 1 301 -11 206 280 0 0 chr3 139003761 139003811 -88520767 + GA-rich Low_complexity Low_complexity 4 53 0 186 300 124 34 chr3 139004042 139004275 -88520303 + L2 LINE L2 1803 2056 -1258 208 271 45 30 chr3 139004491 139004624 -88519954 - L2 LINE L2 -1248 2066 1932 394 284 104 37 chr3 139004863 139005148 -88519430 + L1M3 LINE L1 4029 4331 -1815 3497 246 140 51 chr3 139005148 139005957 -88518621 + L1MEc LINE L1 34 770 -5626 2227 99 3 23 chr3 139005957 139006259 -88518319 + AluSq SINE Alu 11 306 -7 3497 246 140 51 chr3 139006259 139006898 -88517680 + L1MEc LINE L1 770 1636 -4760 1674 202 0 17 chr3 139006898 139007200 -88517378 + AluJo SINE Alu 2 298 -14 3497 246 140 51 chr3 139007200 139007333 -88517245 + L1MEc LINE L1 1636 1756 -4640 700 193 13 0 chr3 139007393 139007543 -88517035 + L1M3 LINE L1 4669 4820 -1326 * 2312 178 27 25 chr3 139007516 139007946 -88516632 + L1M3 LINE L1 5028 5462 -709 186 43 0 0 chr3 139007946 139007969 -88516609 + (GGAAA)n Simple_repeat Simple_repeat 2 24 0 2312 178 27 25 chr3 139007969 139008192 -88516386 + L1M3 LINE L1 5462 5683 -488 1070 146 0 0 chr3 139008192 139008343 -88516235 - Tigger3(Golem) DNA MER2_type 0 3029 2879 2415 67 0 0 chr3 139008675 139008973 -88515605 - AluY SINE Alu -13 298 1 299 227 93 21 chr3 139009373 139009470 -88515108 - L1ME4a LINE L1 -5 6116 6013 476 256 85 18 chr3 139009473 139009637 -88514941 - MIR SINE MIR -79 183 9 241 225 12 12 chr3 139009953 139010033 -88514545 + CT-rich Low_complexity Low_complexity 3 82 0 775 161 73 0 chr3 139010048 139010172 -88514406 - FLAM_C SINE Alu 0 133 1 836 62 0 0 chr3 139010198 139010295 -88514283 - AluY SINE Alu -20 291 195 2166 76 0 0 chr3 139010297 139010561 -88514017 - AluSg SINE Alu -46 264 1 271 171 0 0 chr3 139010567 139010608 -88513970 - U6 snRNA snRNA -66 41 1 2320 91 0 14 chr3 139010697 139010994 -88513584 - AluSx SINE Alu -19 293 1 2237 85 11 0 chr3 139011048 139011360 -88513218 - AluSp SINE Alu 0 315 1 1823 137 4 4 chr3 139011427 139011690 -88512888 - AluJb SINE Alu -45 267 5 271 313 133 36 chr3 139011867 139012062 -88512516 + L2 LINE L2 2877 3090 -182 1458 171 0 64 chr3 139012337 139012635 -88511943 + AluJb SINE Alu 19 297 -15 221 286 48 12 chr3 139012643 139012727 -88511851 - MER5A DNA MER1_type -23 166 80 257 254 0 0 chr3 139012989 139013048 -88511530 + MIR SINE MIR 203 261 -1 23 0 0 0 chr3 139013093 139013116 -88511462 + AT_rich Low_complexity Low_complexity 1 23 0 807 228 126 47 chr3 139013221 139013475 -88511103 - LTR16C LTR ERVL -2 489 216 1284 187 0 63 chr3 139013475 139013743 -88510835 - AluJb SINE Alu -17 295 45 438 246 193 50 chr3 139014083 139014435 -88510143 + LTR16B LTR ERVL 1 450 0 476 186 124 50 chr3 139014438 139014599 -88509979 - MER104 DNA MER2_type -3 177 5 1720 147 6 39 chr3 139015349 139015661 -88508917 - AluJo SINE Alu -2 310 9 193 263 84 53 chr3 139016567 139016662 -88507916 - L2 LINE L2 -181 3091 2994 2212 79 14 0 chr3 139017024 139017339 -88507239 - AluY SINE Alu 0 319 1 1759 149 0 14 chr3 139017896 139018177 -88506401 - AluSq SINE Alu -36 277 1 419 260 65 7 chr3 139018178 139018332 -88506246 - L1M4 LINE L1 -2172 3974 3812 310 219 105 58 chr3 139018399 139018527 -88506051 - LTR45B LTR ERV1 0 783 358 765 183 0 0 chr3 139018528 139018648 -88505930 + AluJb SINE Alu 165 284 -28 2222 147 38 3 chr3 139018648 139018994 -88505584 - LTR45B LTR ERV1 -129 360 3 1444 197 7 19 chr3 139019540 139019809 -88504769 - AluJo SINE Alu -46 266 1 6281 136 29 26 chr3 139019925 139020819 -88503759 - L1MC1 LINE L1 0 6333 5436 1589 164 43 16 chr3 139020819 139021123 -88503455 - AluJo SINE Alu 0 312 1 6281 136 29 26 chr3 139021123 139021354 -88503224 - L1MC1 LINE L1 -897 5436 5207 683 141 91 0 chr3 139021693 139021814 -88502764 - L1MB7 LINE L1 -9 6175 6044 1024 171 12 0 chr3 139021815 139021985 -88502593 + AluJb SINE Alu 141 312 0 2043 140 34 17 chr3 139021985 139022341 -88502237 - L1MB7 LINE L1 -132 6052 5691 2407 58 3 17 chr3 139023561 139023856 -88500722 - AluY SINE Alu -20 291 1 2199 103 0 3 chr3 139024236 139024518 -88500060 - AluSx SINE Alu -27 285 5 2221 135 100 18 chr3 139024569 139024968 -88499610 - MSTB1 LTR MaLR 0 432 1 525 222 0 0 chr3 139025179 139025269 -88499309 - FLAM_A SINE Alu -52 90 1 1690 178 0 0 chr3 139025460 139025781 -88498797 - AluJb SINE Alu 0 321 1 696 250 170 0 chr3 139026150 139026374 -88498204 - MIR SINE MIR 0 262 1 1261 128 0 0 chr3 139027291 139027463 -88497115 + AluSg/x SINE Alu 124 295 -15 250 195 0 0 chr3 139027701 139027742 -88496836 - MER5A DNA MER1_type -148 41 1 491 215 58 76 chr3 139028177 139028349 -88496229 + LTR33 LTR ERVL 45 213 -308 675 228 119 15 chr3 139028384 139028586 -88495992 + LTR33 LTR ERVL 299 521 0 219 316 126 11 chr3 139028641 139028736 -88495842 + L2 LINE L2 3162 3267 -5 302 281 258 24 chr3 139028901 139029068 -88495510 - MIR SINE MIR -31 231 26 783 278 60 67 chr3 139029589 139030335 -88494243 - L1M4 LINE L1 -835 5311 4571 553 208 183 75 chr3 139030884 139031125 -88493453 - L1ME1 LINE L1 -8 6158 5892 1576 174 38 109 chr3 139031145 139031236 -88493342 - L1M4 LINE L1 -3317 2829 2733 2246 102 0 0 chr3 139031236 139031520 -88493058 + AluSx SINE Alu 1 284 -28 1576 174 38 109 chr3 139031520 139031533 -88493045 - L1M4 LINE L1 -3413 2733 2721 366 23 0 0 chr3 139031533 139031576 -88493002 + (TA)n Simple_repeat Simple_repeat 2 44 0 1576 174 38 109 chr3 139031576 139031965 -88492613 - L1M4 LINE L1 -3425 2721 2370 876 148 0 21 chr3 139031998 139032140 -88492438 - L1MB2 LINE L1 -2 6169 6031 1254 129 33 5 chr3 139032145 139032355 -88492223 - L1MB2 LINE L1 -276 5907 5692 1109 158 31 5 chr3 139032379 139032575 -88492003 + MER7A DNA MER2_type 1 199 -147 1173 237 98 50 chr3 139032689 139032920 -88491658 - L2 LINE L2 -755 2559 2341 2271 109 3 0 chr3 139032920 139033224 -88491354 - AluSc SINE Alu -4 305 1 1173 237 98 50 chr3 139033224 139033469 -88491109 - L2 LINE L2 -973 2341 2060 1407 176 68 11 chr3 139033474 139033752 -88490826 + AluSx SINE Alu 7 300 -12 1484 254 21 5 chr3 139033752 139034134 -88490444 - L2 LINE L2 -1248 2066 1679 507 149 14 0 chr3 139035017 139035091 -88489487 - FRAM SINE Alu -45 131 57 650 278 114 9 chr3 139035153 139035380 -88489198 + MIR SINE MIR 10 260 -2 2199 103 0 10 chr3 139035860 139036150 -88488428 + AluSx SINE Alu 1 287 -25 467 45 15 0 chr3 139036151 139036217 -88488361 + (TAGA)n Simple_repeat Simple_repeat 4 70 0 212 319 0 14 chr3 139036347 139036416 -88488162 + MIR SINE MIR 7 74 -188 809 227 58 6 chr3 139036450 139036622 -88487956 + MIR SINE MIR 42 222 -40 21 0 0 0 chr3 139036670 139036691 -88487887 + AT_rich Low_complexity Low_complexity 1 21 0 5837 87 3 0 chr3 139036691 139037418 -88487160 - L1PA10 LINE L1 -4 6164 5436 2224 100 0 17 chr3 139037520 139037821 -88486757 - AluSc SINE Alu -13 296 1 2284 77 0 7 chr3 139038728 139039015 -88485563 + AluY SINE Alu 1 285 -26 2189 102 20 3 chr3 139039116 139039409 -88485169 + AluY SINE Alu 1 298 -13 24 0 0 0 chr3 139039736 139039760 -88484818 + AT_rich Low_complexity Low_complexity 1 24 0 2128 139 0 7 chr3 139040001 139040335 -88484243 + AluJb SINE Alu 6 337 0 2070 112 0 7 chr3 139041577 139041855 -88482723 - AluSx SINE Alu -10 302 27 481 244 135 27 chr3 139042497 139042683 -88481895 + MIR SINE MIR 3 207 -55 1902 114 59 0 chr3 139042990 139043138 -88481440 - AluSx SINE Alu -24 288 150 180 0 0 0 chr3 139043138 139043158 -88481420 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 1902 114 59 0 chr3 139043158 139043281 -88481297 - AluSx SINE Alu -162 150 1 755 285 263 50 chr3 139043488 139044225 -88480353 + HAL1 LINE L1 12 905 -1602 473 311 146 18 chr3 139044311 139044530 -88480048 - MIR SINE MIR -3 259 13 854 265 75 39 chr3 139044652 139044984 -88479594 - Tigger8 DNA MER2_type -321 345 2 275 273 71 30 chr3 139045318 139045417 -88479161 + MIR SINE MIR 35 137 -125 1290 193 82 40 chr3 139045746 139046105 -88478473 - MLT1E2 LTR MaLR -226 400 8 328 253 0 0 chr3 139046111 139046186 -88478392 - L1PA15-16 LINE L1 -4357 2492 2418 639 195 18 0 chr3 139046290 139046403 -88478175 - FRAM SINE Alu -8 168 54 438 20 0 0 chr3 139046411 139046462 -88478116 + (TG)n Simple_repeat Simple_repeat 2 52 0 821 147 0 9 chr3 139046462 139046578 -88478000 - FLAM_C SINE Alu -18 115 1 1079 342 72 5 chr3 139046598 139046975 -88477603 - MER115 DNA AcHobo -266 427 26 297 344 87 72 chr3 139047258 139047592 -88476986 + L2 LINE L2 2932 3270 -2 22 35 0 0 chr3 139048542 139048571 -88476007 + AT_rich Low_complexity Low_complexity 1 29 0 2175 91 51 3 chr3 139048754 139049050 -88475528 + AluSq SINE Alu 1 310 -3 2336 59 0 16 chr3 139049257 139049564 -88475014 + AluY SINE Alu 1 302 -9 1842 166 47 0 chr3 139049700 139049996 -88474582 + AluJb SINE Alu 3 312 0 202 139 0 47 chr3 139050440 139050483 -88474095 + (TTCC)n Simple_repeat Simple_repeat 3 43 0 1021 191 0 0 chr3 139050572 139050745 -88473833 + AluJo SINE Alu 3 175 -137 600 141 175 51 chr3 139050745 139050922 -88473656 - Charlie5 DNA MER1_type -42 2570 2372 926 64 0 0 chr3 139051127 139051237 -88473341 + AluSg SINE Alu 2 111 -199 247 226 0 32 chr3 139051242 139051304 -88473274 + (TATG)n Simple_repeat Simple_repeat 3 62 0 22 0 0 0 chr3 139051429 139051451 -88473127 + AT_rich Low_complexity Low_complexity 1 22 0 710 325 122 28 chr3 139052330 139053205 -88471373 - L2 LINE L2 -182 3090 2134 398 281 25 25 chr3 139053221 139053342 -88471236 + L2 LINE L2 3193 3313 0 1969 147 16 10 chr3 139054249 139054556 -88470022 + AluSg SINE Alu 2 310 0 295 295 64 0 chr3 139056233 139056311 -88468267 - L2 LINE L2 -86 3186 3104 363 267 114 8 chr3 139057158 139057289 -88467289 - MIR SINE MIR -70 192 48 717 187 8 16 chr3 139058499 139058622 -88465956 + FLAM_A SINE Alu 1 122 -11 1410 163 9 4 chr3 139058649 139058876 -88465702 + AluJo SINE Alu 1 228 -84 25 0 0 0 chr3 139058916 139058941 -88465637 + AT_rich Low_complexity Low_complexity 1 25 0 821 263 84 0 chr3 139058950 139059140 -88465438 + MIR SINE MIR 38 243 -19 21 57 0 0 chr3 139059218 139059253 -88465325 + AT_rich Low_complexity Low_complexity 1 35 0 226 340 87 0 chr3 139059719 139059822 -88464756 + L2 LINE L2 3142 3253 -19 1916 141 20 13 chr3 139061446 139061751 -88462827 + AluJo SINE Alu 1 307 -5 650 121 0 0 chr3 139062067 139062181 -88462397 + AluSg/x SINE Alu 199 312 0 216 0 0 0 chr3 139063112 139063136 -88461442 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 2215 102 3 0 chr3 139063287 139063603 -88460975 + AluSp SINE Alu 1 313 0 1835 176 0 14 chr3 139063871 139064167 -88460411 - AluJo SINE Alu -20 292 1 868 177 16 83 chr3 139064210 139064354 -88460224 + MIR SINE MIR 57 186 -76 2236 105 0 3 chr3 139064354 139064648 -88459930 + AluSq SINE Alu 5 297 -16 868 177 16 83 chr3 139064648 139064695 -88459883 + MIR SINE MIR 186 235 -27 417 290 160 0 chr3 139065491 139065622 -88458956 + MER63A DNA MER1_type 59 210 0 462 148 0 25 chr3 139065787 139065868 -88458710 - AluJ/FRAM SINE Alu -6 306 228 1381 275 25 10 chr3 139066007 139066403 -88458175 - L1MC4a LINE L1 -1878 5930 5529 223 350 0 64 chr3 139066403 139066543 -88458035 + L2 LINE L2 2617 2747 -567 887 202 134 5 chr3 139066584 139066807 -88457771 + MER33 DNA MER1_type 2 253 -71 424 191 45 9 chr3 139066817 139066927 -88457651 + MER33 DNA MER1_type 209 322 -2 295 187 288 58 chr3 139068357 139068496 -88456082 - L1ME4a LINE L1 -10 6111 5941 2292 94 3 7 chr3 139068569 139068877 -88455701 + AluSx SINE Alu 1 307 -5 201 229 0 0 chr3 139068877 139068925 -88455653 + GA-rich Low_complexity Low_complexity 1 48 0 1836 159 14 0 chr3 139069724 139070001 -88454577 - AluJo SINE Alu -31 281 1 956 251 142 39 chr3 139070080 139070798 -88453780 - L2 LINE L2 -4 3309 2520 193 167 208 0 chr3 139071133 139071181 -88453397 - MIR SINE MIR -112 96 39 * 526 211 12 87 chr3 139071169 139071330 -88453248 + MER5B DNA MER1_type 30 178 0 2245 92 4 0 chr3 139071366 139071690 -88452888 + AluSp SINE Alu 1 325 0 425 245 13 33 chr3 139074646 139074797 -88449781 + (CAGAGA)n Simple_repeat Simple_repeat 3 150 0 1963 142 0 7 chr3 139075150 139075445 -88449133 - AluSx SINE Alu -6 306 14 252 0 0 0 chr3 139075688 139075716 -88448862 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1698 154 56 11 chr3 139075820 139076106 -88448472 + AluJb SINE Alu 1 299 -13 2421 88 3 0 chr3 139076359 139076666 -88447912 + AluSx SINE Alu 1 308 -4 180 318 122 47 chr3 139076698 139077123 -88447455 - L2 LINE L2 -411 2903 2447 223 281 45 11 chr3 139077215 139077304 -88447274 + MIR SINE MIR 118 209 -53 680 293 74 8 chr3 139077325 139077567 -88447011 - MIR SINE MIR -1 261 4 754 244 0 17 chr3 139078079 139078255 -88446323 + MER5B DNA MER1_type 1 173 -5 1796 158 3 26 chr3 139078994 139079297 -88445281 + AluJo SINE Alu 1 296 -16 410 291 204 52 chr3 139079518 139079807 -88444771 + LTR16C LTR ERVL 37 369 -122 2130 130 0 40 chr3 139079810 139079996 -88444582 - AluSx SINE Alu -1 311 142 1984 121 7 29 chr3 139079996 139080302 -88444276 - AluSg SINE Alu -11 299 1 2130 130 0 40 chr3 139080302 139080439 -88444139 - AluSx SINE Alu -170 142 1 298 210 16 0 chr3 139080460 139080522 -88444056 + LTR16C LTR ERVL 429 491 0 425 358 11 6 chr3 139080571 139080750 -88443828 - MIR3 SINE MIR -10 198 19 766 262 49 0 chr3 139080794 139080977 -88443601 - MER117 DNA MER1_type -5 192 1 1200 265 20 59 chr3 139082297 139082738 -88441840 - LTR16A1 LTR ERVL -4 453 30 799 309 66 93 chr3 139082789 139082940 -88441638 + L3 LINE CR1 836 990 -587 5126 104 47 56 chr3 139082940 139083560 -88441018 + L1MC2 LINE L1 5490 6103 -241 1924 104 97 0 chr3 139083560 139083838 -88440740 + AluSx SINE Alu 1 305 -7 5126 104 47 56 chr3 139083838 139084062 -88440516 + L1MC2 LINE L1 6103 6327 -17 799 309 66 93 chr3 139084062 139084573 -88440005 + L3 LINE CR1 990 1480 -97 247 330 80 0 chr3 139084883 139084983 -88439595 - MIR SINE MIR -1 261 154 1626 205 13 3 chr3 139085000 139085307 -88439271 + AluJo SINE Alu 1 310 -2 233 163 20 0 chr3 139085307 139085356 -88439222 + GA-rich Low_complexity Low_complexity 1 50 0 224 228 18 18 chr3 139085367 139085424 -88439154 + GA-rich Low_complexity Low_complexity 1 57 0 972 175 0 29 chr3 139085486 139085657 -88438921 - AluJb SINE Alu -14 298 133 2099 123 3 16 chr3 139085679 139085996 -88438582 + AluSq SINE Alu 1 313 0 1813 196 79 79 chr3 139086123 139086644 -88437934 + MLT1F LTR MaLR 18 538 -4 237 167 0 0 chr3 139086827 139086863 -88437715 - MER2 DNA MER2_type -30 315 280 1351 139 10 5 chr3 139086902 139087111 -88437467 - MER2 DNA MER2_type -134 211 2 549 211 168 21 chr3 139087905 139088095 -88436483 + MIR SINE MIR 6 223 -39 1829 176 0 0 chr3 139088661 139088957 -88435621 - AluJb SINE Alu -12 300 5 230 264 149 0 chr3 139089442 139089529 -88435049 - L2 LINE L2 -3 3269 3170 2071 126 6 25 chr3 139090724 139091041 -88433537 + AluSq SINE Alu 1 311 -2 325 218 115 0 chr3 139091130 139091217 -88433361 - MIR SINE MIR 0 262 166 541 241 0 0 chr3 139091218 139091326 -88433252 - MER81 DNA DNA 0 114 7 1205 249 48 4 chr3 139091354 139091623 -88432955 + MER69 DNA AcHobo 1 281 -2245 344 181 307 0 chr3 139091626 139091753 -88432825 + MER69 DNA AcHobo 2358 2523 -3 238 231 296 28 chr3 139091762 139091870 -88432708 - MIR SINE MIR -114 148 12 231 222 0 0 chr3 139091959 139092004 -88432574 - MIR SINE MIR -107 155 111 1718 172 77 58 chr3 139092005 139092106 -88432472 + MLT1B LTR MaLR 1 99 -291 2013 143 3 0 chr3 139092106 139092413 -88432165 - AluSx SINE Alu -2 310 3 1718 172 77 58 chr3 139092413 139092688 -88431890 + MLT1B LTR MaLR 99 384 -6 418 292 0 0 chr3 139092691 139092787 -88431791 - MIR SINE MIR -148 114 19 1977 194 46 35 chr3 139092796 139093059 -88431519 - MER90 LTR ERV1 0 575 289 2611 60 0 0 chr3 139093059 139093360 -88431218 - AluY SINE Alu -10 301 1 1977 194 46 35 chr3 139093360 139093584 -88430994 - MER90 LTR ERV1 -286 289 69 1034 280 101 76 chr3 139094744 139095298 -88429280 - MLT1K LTR MaLR -7 581 14 21 0 0 0 chr3 139095365 139095386 -88429192 + AT_rich Low_complexity Low_complexity 1 21 0 1630 142 116 7 chr3 139096018 139096293 -88428285 - AluSg SINE Alu -5 305 1 3847 140 0 6 chr3 139096381 139096911 -88427667 - MER1A DNA MER1_type 0 527 1 1730 173 22 0 chr3 139097265 139097569 -88427009 + AluJb SINE Alu 1 310 0 273 257 76 98 chr3 139097619 139097881 -88426697 - MIR3 SINE MIR 0 262 11 511 268 102 21 chr3 139099279 139099514 -88425064 - MLT1K LTR MaLR 0 588 335 393 302 40 67 chr3 139100019 139100168 -88424410 + L2 LINE L2 3126 3270 -2 1595 134 37 118 chr3 139100271 139100645 -88423933 - MER2 DNA MER2_type 0 344 1 2102 211 86 6 chr3 139100948 139101435 -88423143 - MLT1F LTR MaLR -7 535 10 616 336 60 17 chr3 139101460 139101758 -88422820 - L3 LINE CR1 -9 1568 1258 294 295 48 41 chr3 139101895 139102084 -88422494 - L1ME4a LINE L1 -43 6078 5885 8052 30 0 0 chr3 139102084 139103105 -88421473 - L1PA4 LINE L1 0 6155 5139 294 295 48 41 chr3 139103105 139103183 -88421395 - L1ME4a LINE L1 -236 5885 5809 252 248 110 41 chr3 139103213 139103358 -88421220 - L1ME4a LINE L1 -175 5946 5792 1303 164 5 0 chr3 139103618 139103825 -88420753 + AluJo SINE Alu 85 292 -20 2322 62 38 7 chr3 139103977 139104267 -88420311 + AluY SINE Alu 1 299 -12 214 264 14 14 chr3 139104673 139104745 -88419833 + CT-rich Low_complexity Low_complexity 3 74 0 2300 110 0 0 chr3 139105777 139106086 -88418492 - AluSx SINE Alu -3 309 1 2028 136 23 0 chr3 139106117 139106419 -88418159 - AluSx SINE Alu -3 309 1 1522 174 3 76 chr3 139106422 139106739 -88417839 - AluJb SINE Alu -18 294 1 265 281 109 32 chr3 139106744 139106901 -88417677 - MIR SINE MIR -51 211 44 848 130 0 0 chr3 139107004 139107119 -88417459 + AluSg SINE Alu 1 115 -195 333 151 19 22 chr3 139107119 139107211 -88417367 + AluSp/q SINE Alu 167 225 -78 1694 256 91 38 chr3 139107462 139108777 -88415801 + HAL1 LINE L1 67 1559 -948 1740 143 23 40 chr3 139108784 139109084 -88415494 + AluJb SINE Alu 1 295 -17 23 33 0 0 chr3 139109376 139109406 -88415172 + AT_rich Low_complexity Low_complexity 1 30 0 935 258 82 19 chr3 139109406 139109674 -88414904 + L1MC/D LINE L1 5423 5707 -2101 2258 123 0 0 chr3 139109746 139110047 -88414531 - AluSx SINE Alu -11 301 1 2472 99 59 31 chr3 139110106 139110460 -88414118 - THE1B LTR MaLR 0 364 1 491 276 109 8 chr3 139110518 139110893 -88413685 + L1ME LINE L1 5156 5574 -588 1850 130 71 60 chr3 139111494 139111862 -88412716 - THE1C LTR MaLR -1 374 3 297 75 0 0 chr3 139112065 139112105 -88412473 + (TCCC)n Simple_repeat Simple_repeat 4 43 0 37981 83 14 21 chr3 139112288 139115136 -88409442 + L1PA6 LINE L1 11 2879 -3275 2569 71 0 0 chr3 139115136 139115447 -88409131 + AluY SINE Alu 1 311 0 37981 83 14 21 chr3 139115447 139116045 -88408533 + L1PA6 LINE L1 2879 3480 -2674 2068 102 0 14 chr3 139116045 139116357 -88408221 + AluSc SINE Alu 1 308 0 37981 83 14 21 chr3 139116357 139119103 -88405475 + L1PA6 LINE L1 3480 6153 -1 358 103 0 5 chr3 139119148 139119214 -88405364 - MLT2D LTR ERVL 0 414 369 1913 158 0 13 chr3 139119217 139119521 -88405057 + AluJb SINE Alu 1 300 -12 2033 109 18 11 chr3 139119529 139119876 -88404702 + AluSx SINE Alu 8 312 0 202 268 0 0 chr3 139119942 139119983 -88404595 - L2 LINE L2 -200 3072 3032 26 0 0 0 chr3 139120706 139120732 -88403846 + AT_rich Low_complexity Low_complexity 1 26 0 364 315 93 46 chr3 139121201 139121683 -88402895 + L1ME LINE L1 5326 5663 -458 2267 121 0 3 chr3 139125915 139126228 -88398350 + AluSx SINE Alu 1 312 0 329 248 99 0 chr3 139126239 139126360 -88398218 + MER58B DNA MER1_type 100 232 -109 3793 144 49 20 chr3 139126361 139127049 -88397529 + MER67C LTR ERV1 3 710 0 578 209 0 0 chr3 139127049 139127154 -88397424 + MER58B DNA MER1_type 228 332 -9 272 317 73 0 chr3 139127326 139127408 -88397170 - MER102b DNA MER1_type -1 340 253 242 277 48 0 chr3 139127463 139127546 -88397032 - MER102b DNA MER1_type -194 147 61 246 250 0 0 chr3 139128004 139128056 -88396522 + MIR SINE MIR 210 261 -1 1522 179 8 8 chr3 139128202 139128464 -88396114 + AluJo SINE Alu 47 308 -4 239 0 32 0 chr3 139128473 139128504 -88396074 + (TTA)n Simple_repeat Simple_repeat 3 34 0 7499 51 4 0 chr3 139128504 139129706 -88394872 - L1PA6 LINE L1 -18 6136 4933 3954 185 27 1 chr3 139129704 139130448 -88394130 - L1P LINE L1 -5373 773 11 354 297 0 0 chr3 139130461 139130552 -88394026 + MLT1H1 LTR MaLR 18 108 -459 1071 154 67 26 chr3 139130553 139130748 -88393830 - AluJo SINE Alu -23 289 87 728 250 127 82 chr3 139130749 139131189 -88393389 + MLT1H1 LTR MaLR 96 555 0 394 68 119 3 chr3 139131748 139132114 -88392464 + (TA)n Simple_repeat Simple_repeat 1 408 0 1261 215 81 3 chr3 139132266 139132550 -88392028 + L1MC4 LINE L1 6459 6764 -1278 272 208 0 0 chr3 139132596 139132644 -88391934 - MER58A DNA MER1_type -36 71 24 456 19 0 0 chr3 139132649 139132702 -88391876 + (CA)n Simple_repeat Simple_repeat 2 54 0 2698 89 16 3 chr3 139132707 139133076 -88391502 - L1PA14 LINE L1 -333 5828 5455 375 159 17 0 chr3 139133130 139133239 -88391339 + L1MC4 LINE L1 7704 8042 0 242 250 139 0 chr3 139133812 139133920 -88390658 + L1M4 LINE L1 2170 2292 -3854 634 308 77 25 chr3 139133928 139134467 -88390111 - MLT1L LTR MaLR 0 615 15 932 141 0 0 chr3 139134636 139134771 -88389807 + FLAM_C SINE Alu 1 135 -8 322 295 139 0 chr3 139135022 139135151 -88389427 - LTR16A1 LTR ERVL -308 149 3 479 202 91 0 chr3 139135155 139135254 -88389324 + MIR SINE MIR 3 110 -152 351 171 53 0 chr3 139135345 139135421 -88389157 + MIR SINE MIR 121 200 -62 438 222 13 0 chr3 139135525 139135610 -88388968 + L1MC4a LINE L1 5481 5569 -605 799 269 167 64 chr3 139135610 139135679 -88388899 + MLT1H1 LTR MaLR 1 62 -493 2576 105 118 18 chr3 139135679 139136068 -88388510 - MSTA LTR MaLR 0 428 1 799 269 167 64 chr3 139136068 139136496 -88388082 + MLT1H1 LTR MaLR 62 555 0 1779 223 92 108 chr3 139136496 139137322 -88387256 + L1MC4a LINE L1 5562 6370 -1438 2175 185 3 11 chr3 139137322 139137690 -88386888 - MLT1A1 LTR MaLR 0 365 1 1779 223 92 108 chr3 139137690 139137892 -88386686 + L1MC4a LINE L1 6370 6574 -1234 2231 212 48 30 chr3 139138417 139138877 -88385701 - MER63C DNA MER1_type -381 679 345 270 0 0 0 chr3 139138877 139138907 -88385671 + (TA)n Simple_repeat Simple_repeat 2 31 0 2231 212 48 30 chr3 139138907 139139259 -88385319 - MER63C DNA MER1_type -715 345 1 608 267 119 45 chr3 139141048 139141400 -88383178 + L2 LINE L2 2379 2756 -558 225 0 0 0 chr3 139142513 139142538 -88382040 + (CGGGGG)n Simple_repeat Simple_repeat 3 27 0 274 236 87 55 chr3 139143666 139143810 -88380768 - MER5A DNA MER1_type -22 167 7 2098 109 0 16 chr3 139144086 139144398 -88380180 + AluSc SINE Alu 1 307 -2 212 267 46 15 chr3 139145574 139145705 -88378873 + L2 LINE L2 1939 2073 -1241 339 232 109 65 chr3 139145760 139145898 -88378680 - MIR3 SINE MIR -62 146 3 214 254 0 17 chr3 139146765 139146824 -88377754 + (TAGGG)n Simple_repeat Simple_repeat 5 62 0 2156 129 0 0 chr3 139146825 139147120 -88377458 - AluSg SINE Alu -15 295 1 309 285 7 83 chr3 139147311 139147455 -88377123 + MIR SINE MIR 124 256 -6 1994 142 0 3 chr3 139147462 139147764 -88376814 - AluJb SINE Alu -11 301 1 1865 142 7 26 chr3 139147773 139148076 -88376502 - AluJo SINE Alu -15 297 1 196 327 173 19 chr3 139150379 139150541 -88374037 + L2 LINE L2 2221 2407 -907 1527 181 55 10 chr3 139150626 139150918 -88373660 - AluJb SINE Alu -7 305 1 285 252 205 53 chr3 139151481 139151632 -88372946 - MIR3 SINE MIR -5 203 30 815 239 154 72 chr3 139151758 139151819 -88372759 - MLT1J2 LTR MaLR -9 441 386 1970 127 36 0 chr3 139151819 139152122 -88372456 - AluSx SINE Alu 0 313 1 815 239 154 72 chr3 139152122 139152449 -88372129 - MLT1J2 LTR MaLR -64 386 20 227 261 204 11 chr3 139152949 139153037 -88371541 - L2 LINE L2 -8 3264 3160 25 65 0 0 chr3 139153133 139153179 -88371399 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr3 139153398 139153427 -88371151 + AT_rich Low_complexity Low_complexity 1 29 0 627 256 161 5 chr3 139154258 139154469 -88370109 - MIR SINE MIR 0 262 19 762 219 93 39 chr3 139154678 139154867 -88369711 + MIR SINE MIR 13 215 -47 2026 149 0 13 chr3 139154867 139155182 -88369396 + AluJb SINE Alu 1 311 -1 762 219 93 39 chr3 139155182 139155197 -88369381 + MIR SINE MIR 215 228 -34 428 288 62 34 chr3 139155298 139155444 -88369134 - L2 LINE L2 -1 3271 3122 512 325 141 4 chr3 139155572 139155849 -88368729 + L2 LINE L2 2946 3260 -12 1841 118 74 19 chr3 139155859 139156130 -88368448 - AluSx SINE Alu -26 286 1 267 315 141 50 chr3 139156144 139156542 -88368036 - L2 LINE L2 -240 3032 2598 1882 146 6 22 chr3 139158246 139158562 -88366016 - AluJb SINE Alu -1 311 1 694 238 7 14 chr3 139158631 139158774 -88365804 - MIR SINE MIR -87 175 34 718 251 73 9 chr3 139159187 139159406 -88365172 + MIR SINE MIR 29 261 -1 741 284 65 4 chr3 139159847 139160079 -88364499 + MIR SINE MIR 16 261 -1 2243 110 0 10 chr3 139163520 139163828 -88360750 - AluSx SINE Alu -7 305 1 532 218 158 0 chr3 139163883 139164016 -88360562 - MIR SINE MIR -101 161 8 22 0 0 0 chr3 139164048 139164070 -88360508 + AT_rich Low_complexity Low_complexity 1 22 0 1125 138 0 22 chr3 139164151 139164332 -88360246 + FRAM SINE Alu 1 176 0 1325 205 33 48 chr3 139166256 139166651 -88357927 - L1MC5 LINE L1 -45 7916 7528 593 311 112 19 chr3 139167673 139167985 -88356593 + MER102b DNA MER1_type 1 341 0 248 211 0 0 chr3 139168322 139168374 -88356204 - L1ME4a LINE L1 -8 6113 6062 809 114 22 1 chr3 139168445 139168728 -88355850 + AluSx SINE Alu 1 321 0 24 0 0 0 chr3 139168736 139168760 -88355818 + AT_rich Low_complexity Low_complexity 1 24 0 1559 144 0 89 chr3 139168799 139169090 -88355488 + AluJo SINE Alu 1 265 -47 545 255 57 33 chr3 139169117 139169329 -88355249 - L1ME4a LINE L1 -276 5845 5629 888 226 37 79 chr3 139169922 139170352 -88354226 - L1ME LINE L1 -4873 1667 1256 10426 173 28 11 chr3 139170370 139171192 -88353386 - L1PB2 LINE L1 -5 6540 5734 219 88 0 0 chr3 139171192 139171226 -88353352 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 10426 173 28 11 chr3 139171226 139172098 -88352480 - L1PB2 LINE L1 -811 5734 4879 459 0 0 0 chr3 139172098 139172149 -88352429 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 10426 173 28 11 chr3 139172149 139173549 -88351029 - L1PB2 LINE L1 -1666 4879 3505 1951 134 13 20 chr3 139173549 139173855 -88350723 - AluSx SINE Alu -8 304 1 10426 173 28 11 chr3 139173855 139173867 -88350711 - L1PB2 LINE L1 -3040 3505 3495 2054 137 3 3 chr3 139173867 139174160 -88350418 - AluJb SINE Alu -19 293 1 10426 173 28 11 chr3 139174160 139174278 -88350300 - L1PB2 LINE L1 -3050 3495 1025 257 240 52 21 chr3 139174414 139174510 -88350068 - L1MDa LINE L1 -6408 132 34 262 200 105 63 chr3 139175202 139175224 -88349354 - MIR SINE MIR -89 173 153 2095 127 0 0 chr3 139175224 139175551 -88349027 - AluSx SINE Alu 0 327 1 262 200 105 63 chr3 139175551 139175622 -88348956 - MIR SINE MIR -109 153 75 1773 209 42 21 chr3 139175779 139176161 -88348417 + MLT1B LTR MaLR 1 390 0 364 148 12 25 chr3 139176518 139176599 -88347979 + T-rich Low_complexity Low_complexity 5 84 0 736 161 46 8 chr3 139176610 139176740 -88347838 - AluSx SINE Alu -11 299 165 888 103 0 0 chr3 139176740 139176857 -88347721 - AluSx SINE Alu -196 117 1 1571 145 44 24 chr3 139177177 139177474 -88347104 + AluSx SINE Alu 1 303 -9 1797 114 95 22 chr3 139177493 139177766 -88346812 + AluSx SINE Alu 1 293 -19 2248 114 3 16 chr3 139178127 139178442 -88346136 - AluSx SINE Alu -1 311 1 2054 137 3 3 chr3 139178454 139178747 -88345831 - AluJb SINE Alu -19 293 1 294 237 18 35 chr3 139178750 139178864 -88345714 - L1ME LINE L1 -5404 1136 1025 282 268 37 33 chr3 139178922 139179094 -88345484 - L1ME LINE L1 -5878 652 482 220 242 16 16 chr3 139180555 139180617 -88343961 + GA-rich Low_complexity Low_complexity 5 66 0 277 145 145 0 chr3 139180997 139181059 -88343519 - L1PA6 LINE L1 0 6154 6084 630 26 0 0 chr3 139181489 139181565 -88343013 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 446 315 34 7 chr3 139182284 139182430 -88342148 - L2 LINE L2 -16 3256 3107 210 256 24 73 chr3 139182804 139182886 -88341692 + L2 LINE L2 3195 3272 0 244 325 141 18 chr3 139185855 139186018 -88338560 - MER5A DNA MER1_type 0 189 7 724 183 17 0 chr3 139186729 139186849 -88337729 + FLAM_A SINE Alu 8 129 -13 2170 110 0 0 chr3 139187202 139187492 -88337086 + AluSg SINE Alu 1 290 -20 332 358 73 0 chr3 139188228 139188365 -88336213 + MER117 DNA MER1_type 3 149 -48 1910 256 111 91 chr3 139188610 139188831 -88335747 - L1MC4 LINE L1 -55 7987 7772 2234 102 0 13 chr3 139188831 139189135 -88335443 - AluSx SINE Alu -12 300 1 1910 256 111 91 chr3 139189135 139190188 -88334390 - L1MC4 LINE L1 -270 7772 6688 1489 195 13 33 chr3 139190193 139190500 -88334078 - AluJo SINE Alu -11 301 1 5197 87 50 32 chr3 139190541 139191327 -88333251 - SVA Other Other 0 1386 587 1651 271 114 26 chr3 139191473 139192321 -88332257 - L1MEc LINE L1 -3943 2453 1531 25 0 0 0 chr3 139192582 139192607 -88331971 + AT_rich Low_complexity Low_complexity 1 25 0 199 394 48 0 chr3 139194915 139195019 -88329559 + L2 LINE L2 3163 3271 -1 314 350 29 0 chr3 139195033 139195170 -88329408 - L3 LINE CR1 -46 1531 1391 265 280 0 97 chr3 139195283 139195330 -88329248 - L3 LINE CR1 -181 1396 1361 2093 82 71 0 chr3 139195330 139195610 -88328968 - AluSp SINE Alu -13 300 1 265 280 0 97 chr3 139195610 139195655 -88328923 - L3 LINE CR1 -216 1361 1313 317 291 110 35 chr3 139195898 139196125 -88328453 - MIR SINE MIR -6 256 13 288 333 73 40 chr3 139197008 139197158 -88327420 + MER5B DNA MER1_type 1 155 -23 374 339 8 8 chr3 139197026 139197156 -88327422 - MER5A DNA MER1_type -23 166 37 870 185 190 22 chr3 139197168 139197400 -88327178 + ORSL DNA AcHobo 1 271 -4 292 194 280 32 chr3 139197450 139197543 -88327035 - FLAM_A SINE Alu 0 133 18 2023 101 4 0 chr3 139197571 139197838 -88326740 - AluSx SINE Alu -44 268 1 478 198 78 132 chr3 139198141 139198337 -88326241 + MER112 DNA MER1_type 7 187 -73 1931 111 17 21 chr3 139198337 139198625 -88325953 + AluSg SINE Alu 23 309 -1 478 198 78 132 chr3 139198625 139198685 -88325893 + MER112 DNA MER1_type 187 249 -11 45386 36 3 3 chr3 139198767 139204946 -88319632 + L1PA4 LINE L1 1 6180 0 513 256 83 17 chr3 139205040 139205220 -88319358 - L2 LINE L2 0 3313 3122 896 204 55 6 chr3 139205758 139205939 -88318639 - MER58A DNA MER1_type 0 224 35 35 0 0 0 chr3 139206188 139206223 -88318355 + AT_rich Low_complexity Low_complexity 1 35 0 786 275 149 24 chr3 139207486 139208063 -88316515 + L1ME LINE L1 5142 5803 -367 995 189 92 12 chr3 139208128 139208425 -88316153 + L1ME3 LINE L1 5363 5886 -276 2032 168 15 0 chr3 139208425 139208764 -88315814 + MLT2C1 LTR ERVL 1 344 -53 211 282 0 12 chr3 139208778 139208863 -88315715 + (TA)n Simple_repeat Simple_repeat 1 84 0 229 103 0 51 chr3 139208864 139208903 -88315675 - L1M1 LINE L1 -653 5649 5613 1412 145 8 47 chr3 139209000 139209183 -88315395 - L1MB7 LINE L1 -326 5858 5686 2263 95 14 0 chr3 139209183 139209479 -88315099 + AluSp SINE Alu 1 300 -13 1412 145 8 47 chr3 139209479 139209550 -88315028 - L1MB7 LINE L1 -498 5686 5614 285 129 20 0 chr3 139209550 139209602 -88314976 - MLT2C1 LTR ERVL 0 397 357 988 217 0 0 chr3 139209762 139209928 -88314650 + FRAM SINE Alu 1 166 0 443 260 149 68 chr3 139210699 139211306 -88313272 + L1MC4a LINE L1 3736 4439 -1707 3983 157 78 27 chr3 139211306 139212002 -88312576 + MER44D DNA MER2_type 3 605 0 443 260 149 68 chr3 139212002 139212287 -88312291 + L1MC4a LINE L1 4439 4700 -1446 2799 61 0 21 chr3 139212512 139212891 -88311687 + SVA Other Other 1 371 -1015 2076 159 25 20 chr3 139213834 139214187 -88310391 + L1PA16 LINE L1 5682 6036 -130 9714 27 0 222 chr3 139214187 139215951 -88308627 + SVA Other Other 14 1386 0 1703 235 49 17 chr3 139216115 139216588 -88307990 + L1MC4a LINE L1 5465 5952 -1856 246 311 0 8 chr3 139216593 139216712 -88307866 + (TA)n Simple_repeat Simple_repeat 2 119 0 1398 235 98 90 chr3 139216712 139217167 -88307411 + L1MC4a LINE L1 5946 6396 -1412 2245 98 0 10 chr3 139217167 139217462 -88307116 - AluSc SINE Alu -17 292 1 1398 235 98 90 chr3 139217462 139217522 -88307056 + L1MC4a LINE L1 6396 6454 -1354 2374 102 0 0 chr3 139217522 139217825 -88306753 - AluSc SINE Alu -6 303 1 1398 235 98 90 chr3 139217825 139217924 -88306654 + L1MC4a LINE L1 6454 6551 -1257 477 202 30 20 chr3 139217924 139218023 -88306555 + U13 snRNA snRNA 1 100 -4 1398 235 98 90 chr3 139218023 139218068 -88306510 + L1MC4a LINE L1 6551 6594 -1214 437 0 0 19 chr3 139218068 139218122 -88306456 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 1398 235 98 90 chr3 139218122 139218382 -88306196 + L1MC4a LINE L1 6594 6875 -933 863 275 78 31 chr3 139218392 139218752 -88305826 + L3 LINE CR1 736 1112 -465 473 289 134 15 chr3 139218792 139218993 -88305585 - MIR SINE MIR -13 249 25 211 350 43 21 chr3 139221273 139221413 -88303165 - L2 LINE L2 -1360 1954 1812 3380 146 21 12 chr3 139221483 139222065 -88302513 + L1MB7 LINE L1 5444 6030 -154 347 319 222 26 chr3 139223261 139223603 -88300975 - L3 LINE CR1 -28 1549 1141 1799 147 6 45 chr3 139224113 139224427 -88300151 + AluJo SINE Alu 1 302 -10 391 295 92 29 chr3 139224601 139224774 -88299804 - MIR3 SINE MIR -16 192 9 280 303 58 93 chr3 139225090 139225400 -88299178 + L2 LINE L2 2965 3263 -9 240 367 0 10 chr3 139225610 139225708 -88298870 + L2 LINE L2 3197 3293 -20 1215 161 143 64 chr3 139226342 139226622 -88297956 + AluJo SINE Alu 1 302 0 215 299 128 17 chr3 139226745 139226862 -88297716 - MIR SINE MIR -62 146 17 306 0 0 0 chr3 139226894 139226928 -88297650 + (CA)n Simple_repeat Simple_repeat 1 34 0 626 224 0 28 chr3 139227275 139227418 -88297160 - L2 LINE L2 -6 3307 3169 185 320 0 0 chr3 139227428 139227478 -88297100 - L2 LINE L2 -330 2983 2934 275 289 71 107 chr3 139228572 139228797 -88295781 - L2 LINE L2 -17 3255 3039 1687 157 0 75 chr3 139229196 139229527 -88295051 + AluJb SINE Alu 1 306 -6 206 233 192 14 chr3 139229739 139229812 -88294766 - L3 LINE CR1 -14 1563 1478 439 325 192 19 chr3 139229856 139230283 -88294295 - L3 LINE CR1 -221 1356 856 2284 211 77 2 chr3 139230299 139230886 -88293692 - L1M4 LINE L1 -3217 2929 2299 486 189 43 48 chr3 139230887 139231016 -88293562 + L1ME2 LINE L1 5894 5992 -167 742 200 7 7 chr3 139231016 139231166 -88293412 + L1MA10 LINE L1 6176 6325 -9 1134 181 65 0 chr3 139231180 139231379 -88293199 - Charlie1a DNA MER1_type -1230 225 14 22 35 0 0 chr3 139232967 139232996 -88291582 + AT_rich Low_complexity Low_complexity 1 29 0 2271 115 0 6 chr3 139233007 139233321 -88291257 + AluSx SINE Alu 1 312 0 2635 139 98 56 chr3 139233331 139233977 -88290601 + Charlie1a DNA MER1_type 673 1345 -110 504 234 224 10 chr3 139234445 139234650 -88289928 + MIR SINE MIR 12 260 -2 1842 136 0 57 chr3 139234969 139235300 -88289278 + AluSx SINE Alu 1 312 0 413 214 27 80 chr3 139235309 139235421 -88289157 + AluJb SINE Alu 92 197 -115 21 57 0 0 chr3 139236644 139236679 -88287899 + AT_rich Low_complexity Low_complexity 1 35 0 824 192 0 0 chr3 139236724 139236849 -88287729 + FLAM_A SINE Alu 1 125 -8 27 0 0 0 chr3 139236849 139236876 -88287702 + AT_rich Low_complexity Low_complexity 1 27 0 217 175 75 0 chr3 139237341 139237381 -88287197 + L2 LINE L2 3216 3258 -14 1977 148 10 3 chr3 139237387 139237692 -88286886 - AluSx SINE Alu -5 307 1 253 98 122 0 chr3 139238062 139238103 -88286475 + MIR SINE MIR 201 246 -16 2100 136 0 13 chr3 139238130 139238446 -88286132 + AluJb SINE Alu 1 312 0 693 305 137 51 chr3 139239505 139240450 -88284128 + L1ME4a LINE L1 4084 5109 -1037 1576 179 44 17 chr3 139240563 139240859 -88283719 - AluJo SINE Alu -3 309 6 344 301 94 36 chr3 139240916 139241017 -88283561 + L1ME4a LINE L1 5309 5403 -718 2029 118 6 29 chr3 139241017 139241330 -88283248 - AluSx SINE Alu -6 306 1 344 301 94 36 chr3 139241330 139241373 -88283205 + L1ME4a LINE L1 5403 5442 -679 1730 171 4 7 chr3 139241373 139241653 -88282925 - AluJb SINE Alu -33 279 1 344 301 94 36 chr3 139241653 139241783 -88282795 + L1ME4a LINE L1 5442 5600 -521 516 289 120 68 chr3 139241835 139242503 -88282075 - L2 LINE L2 -86 3227 2517 740 229 112 6 chr3 139242595 139242944 -88281634 + L1ME4a LINE L1 5604 6025 -96 1275 121 32 0 chr3 139242946 139243185 -88281393 + L1MB7 LINE L1 5227 5475 -699 1162 46 0 0 chr3 139243197 139243328 -88281250 - AluSg SINE Alu -179 131 1 3309 179 60 18 chr3 139243328 139244008 -88280570 + L1MB7 LINE L1 5460 6168 -16 353 248 62 39 chr3 139244118 139244247 -88280331 + MIR SINE MIR 128 259 -3 757 159 45 0 chr3 139245794 139245926 -88278652 - L1PA16 LINE L1 -5 6161 6024 2445 72 0 28 chr3 139246224 139246544 -88278034 - AluY SINE Alu 0 311 1 2242 82 0 35 chr3 139246740 139247057 -88277521 - AluSg1 SINE Alu -3 306 1 293 0 27 0 chr3 139247209 139247246 -88277332 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 6507 63 14 57 chr3 139247246 139249307 -88275271 - SVA Other Other -518 1363 14 2168 144 23 20 chr3 139249307 139249661 -88274917 - L1PA16 LINE L1 -130 6036 5682 1698 141 24 5 chr3 139251185 139251548 -88273030 - MER34 LTR ERV1 -13 529 83 2445 80 3 0 chr3 139251548 139251847 -88272731 - AluY SINE Alu -11 300 1 1698 141 24 5 chr3 139251847 139251923 -88272655 - MER34 LTR ERV1 -459 83 10 274 305 95 34 chr3 139251971 139252266 -88272312 + L1ME LINE L1 5539 5851 -270 211 191 0 88 chr3 139252712 139252780 -88271798 - MIR SINE MIR -131 77 16 314 182 159 98 chr3 139252965 139252988 -88271590 + MLT1J LTR MaLR 3 23 -488 2953 137 59 7 chr3 139252988 139253448 -88271130 + MER31A LTR ERV1 1 484 -1 314 182 159 98 chr3 139253448 139253556 -88271022 + MLT1J LTR MaLR 23 142 -369 252 0 0 0 chr3 139253559 139253587 -88270991 + (TAGA)n Simple_repeat Simple_repeat 4 31 0 213 39 0 0 chr3 139253610 139253636 -88270942 + (TG)n Simple_repeat Simple_repeat 1 26 0 239 259 52 0 chr3 139254394 139254452 -88270126 + L2 LINE L2 3251 3311 -2 23 54 0 0 chr3 139255217 139255254 -88269324 + AT_rich Low_complexity Low_complexity 1 37 0 2916 176 30 2 chr3 139256175 139256682 -88267896 + L1MB2 LINE L1 5651 6171 0 209 313 12 25 chr3 139257287 139257367 -88267211 + L2 LINE L2 3235 3313 0 1865 172 3 0 chr3 139257579 139257875 -88266703 - AluSx SINE Alu -13 299 3 848 161 15 0 chr3 139258414 139258551 -88266027 + AluJ SINE Alu 1 139 -173 437 202 248 0 chr3 139258768 139258877 -88265701 - MIR SINE MIR -34 228 93 258 309 221 20 chr3 139258869 139259118 -88265460 + L2 LINE L2 2639 2937 -377 * 610 256 116 64 chr3 139259134 139259462 -88265116 - L2 LINE L2 0 3313 2969 369 321 120 50 chr3 139259455 139259754 -88264824 - L2 LINE L2 -452 2862 2543 * 347 273 264 22 chr3 139259940 139260171 -88264407 - L2 LINE L2 -2107 1207 921 1804 91 12 8 chr3 139260362 139260615 -88263963 + AluSc SINE Alu 56 309 0 22 70 0 0 chr3 139262728 139262771 -88261807 + GC_rich Low_complexity Low_complexity 1 43 0 26 64 0 0 chr3 139263003 139263050 -88261528 + GC_rich Low_complexity Low_complexity 1 47 0 1828 176 21 6 chr3 139264126 139264456 -88260122 - MLT1A1 LTR MaLR 0 365 31 787 176 40 7 chr3 139264459 139264607 -88259971 + AluJ SINE Alu 137 289 -13 196 122 49 49 chr3 139264692 139264733 -88259845 + MIR SINE MIR 220 260 -2 914 308 157 14 chr3 139264807 139265362 -88259216 + L3 LINE CR1 891 1524 -53 1973 142 0 0 chr3 139265419 139265721 -88258857 + AluJb SINE Alu 2 303 0 523 216 0 17 chr3 139265791 139265907 -88258671 - L1MD3 LINE L1 -206 7789 7676 1541 133 33 8 chr3 139266361 139266602 -88257976 - AluJb SINE Alu -2 310 64 324 202 110 18 chr3 139266740 139266849 -88257729 - L2 LINE L2 -1224 2090 1972 5540 267 103 36 chr3 139266868 139269055 -88255523 - L2 LINE L2 -99 3214 830 1813 104 29 25 chr3 139269055 139269334 -88255244 + AluSq SINE Alu 21 300 -13 5540 267 103 36 chr3 139269334 139269660 -88254918 - L2 LINE L2 -2483 830 527 307 206 0 78 chr3 139269660 139269762 -88254816 + L1MEc LINE L1 45 138 -6258 790 157 0 0 chr3 139269772 139269893 -88254685 + FLAM_A SINE Alu 16 136 -6 1573 247 72 5 chr3 139269905 139270334 -88254244 + L1MEc LINE L1 109 566 -5830 1191 211 17 106 chr3 139270350 139270941 -88253637 + L1MEc LINE L1 955 1539 -1037 872 283 98 19 chr3 139270942 139271309 -88253269 - L2 LINE L2 -2885 429 34 2667 146 14 30 chr3 139271726 139272157 -88252421 - MSTB LTR MaLR -2 424 1 868 158 8 0 chr3 139272376 139272509 -88252069 - AluJo SINE Alu -178 134 1 341 321 77 36 chr3 139273347 139273515 -88251063 + L3 LINE CR1 926 1100 -477 2107 133 7 0 chr3 139274100 139274400 -88250178 - AluSx SINE Alu -10 302 1 25 31 0 0 chr3 139274932 139274964 -88249614 + AT_rich Low_complexity Low_complexity 1 32 0 250 292 12 32 chr3 139275035 139275177 -88249401 - L2 LINE L2 -221 3051 2914 243 309 86 43 chr3 139275512 139275745 -88248833 - L2 LINE L2 -467 2847 2605 417 242 22 0 chr3 139275780 139275871 -88248707 - L2 LINE L2 0 3313 3221 991 260 154 58 chr3 139275964 139276735 -88247843 - L2 LINE L2 -105 3208 2372 862 138 8 0 chr3 139277165 139277288 -88247290 + FLAM_C SINE Alu 1 124 -9 556 96 0 0 chr3 139278306 139278379 -88246199 - L1PA10 LINE L1 -3 6165 6093 280 289 108 33 chr3 139278568 139279020 -88245558 + L1P LINE L1 4901 5390 -756 781 297 112 28 chr3 139279063 139279571 -88245007 + L1MC4a LINE L1 5388 5938 -1870 1813 166 31 0 chr3 139279691 139279980 -88244598 - AluJo SINE Alu -14 298 1 395 313 30 8 chr3 139280224 139280355 -88244223 + MER5A DNA MER1_type 55 188 -1 2112 91 49 3 chr3 139280698 139280983 -88243595 + AluSx SINE Alu 1 298 -14 2067 122 11 0 chr3 139281723 139282009 -88242569 + AluSx SINE Alu 9 297 -15 521 275 162 59 chr3 139282330 139282394 -88242184 - MLT1J LTR MaLR -38 473 417 1525 90 29 86 chr3 139282394 139282638 -88241940 - MER30 DNA MER1_type 0 230 1 521 275 162 59 chr3 139282638 139282820 -88241758 - MLT1J LTR MaLR -94 417 255 2037 142 10 0 chr3 139282820 139283115 -88241463 - AluSx SINE Alu -14 298 1 521 275 162 59 chr3 139283115 139283292 -88241286 - MLT1J LTR MaLR -256 255 5 426 203 82 57 chr3 139284297 139284455 -88240123 - MLT1J LTR MaLR -13 498 337 1304 164 12 8 chr3 139284996 139285246 -88239332 + MLT1D LTR MaLR 250 500 -5 1575 168 52 52 chr3 139285310 139285620 -88238958 - AluJb SINE Alu 0 312 3 749 260 100 52 chr3 139285658 139286220 -88238358 + L1ME4a LINE L1 5512 6100 -21 2020 128 3 27 chr3 139286391 139286689 -88237889 + AluSx SINE Alu 3 293 -19 1924 140 34 0 chr3 139286699 139286992 -88237586 + AluJo SINE Alu 1 303 -9 317 262 65 47 chr3 139287176 139287283 -88237295 + L2 LINE L2 3160 3268 -4 189 240 20 160 chr3 139287934 139288034 -88236544 + MIR3 SINE MIR 5 90 -118 2391 94 28 17 chr3 139288626 139288986 -88235592 + THE1B LTR MaLR 1 364 0 448 351 34 30 chr3 139290219 139290515 -88234063 + L2 LINE L2 1846 2142 -1172 537 317 70 29 chr3 139290712 139291106 -88233472 + MER115 DNA AcHobo 1 434 -259 287 295 48 48 chr3 139291230 139291335 -88233243 + L2 LINE L2 3204 3308 -5 2197 141 0 0 chr3 139292294 139292760 -88231818 - AluSx SINE Alu 0 466 1 202 246 43 14 chr3 139293727 139293796 -88230782 - MIR3 SINE MIR -7 201 131 189 337 168 0 chr3 139293822 139293923 -88230655 - MIR SINE MIR -55 153 36 573 266 78 62 chr3 139294061 139294305 -88230273 + MIR SINE MIR 8 255 -7 291 290 0 0 chr3 139295424 139295486 -88229092 - L2 LINE L2 -7 3265 3204 425 270 42 121 chr3 139295531 139295844 -88228734 - L2 LINE L2 -188 3084 2797 497 324 128 54 chr3 139295868 139296276 -88228302 - L2 LINE L2 -8 3264 2827 5549 196 65 18 chr3 139296833 139297197 -88227381 + L1MB8 LINE L1 3667 4012 -2166 1651 157 11 8 chr3 139297197 139297458 -88227120 + AluSx SINE Alu 1 262 -50 189 0 0 0 chr3 139297458 139297479 -88227099 + (CAAA)n Simple_repeat Simple_repeat 4 24 0 5549 196 65 18 chr3 139297479 139299505 -88225073 + L1MB8 LINE L1 4011 6172 -6 309 309 51 46 chr3 139299520 139299695 -88224883 + L1ME LINE L1 5320 5495 -675 377 317 144 8 chr3 139299843 139300007 -88224571 - MIR3 SINE MIR -6 202 20 21 0 0 0 chr3 139300529 139300550 -88224028 + AT_rich Low_complexity Low_complexity 1 21 0 1981 138 0 48 chr3 139300668 139300979 -88223599 + AluJb SINE Alu 1 296 -16 28 61 0 0 chr3 139301417 139301466 -88223112 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr3 139301604 139301625 -88222953 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 139301682 139301704 -88222874 + AT_rich Low_complexity Low_complexity 1 22 0 310 175 0 0 chr3 139301993 139302050 -88222528 - Charlie5 DNA MER1_type -32 2580 2524 6611 190 27 46 chr3 139302051 139303820 -88220758 + L1PB3 LINE L1 2750 4484 -1662 4221 25 2 0 chr3 139303826 139304348 -88220230 - L1PA4 LINE L1 -2100 4046 3524 11156 30 7 0 chr3 139304348 139306441 -88218137 + L1PA4 LINE L1 4051 6152 -3 5186 146 18 11 chr3 139306449 139308110 -88216468 + L1PB3 LINE L1 4477 6147 -7 25 94 0 23 chr3 139308110 139308238 -88216340 + AT_rich Low_complexity Low_complexity 1 125 0 775 163 68 80 chr3 139308243 139308494 -88216084 - Charlie5 DNA MER1_type -67 2545 2298 * 2399 168 52 10 chr3 139308488 139309064 -88215514 - Charlie5 DNA MER1_type -1426 1186 587 1256 176 70 36 chr3 139309060 139309389 -88215189 - Charlie5 DNA MER1_type -2228 384 45 * 201 74 0 0 chr3 139309463 139309490 -88215088 + (AATAG)n Simple_repeat Simple_repeat 4 30 0 347 222 79 16 chr3 139309500 139309626 -88214952 - MER112 DNA MER1_type -125 135 2 2822 13 0 0 chr3 139309929 139310237 -88214341 + AluY SINE Alu 1 308 -3 201 323 32 0 chr3 139310303 139310365 -88214213 - L2 LINE L2 -527 2787 2724 482 220 121 56 chr3 139311372 139311677 -88212901 - L1MC5 LINE L1 -414 7547 7223 265 296 81 12 chr3 139311725 139311897 -88212681 - L1P4 LINE L1 -372 5802 5619 1157 199 0 10 chr3 139311965 139312161 -88212417 - AluJo SINE Alu -118 194 1 24 32 0 0 chr3 139312248 139312279 -88212299 + AT_rich Low_complexity Low_complexity 1 31 0 2217 114 0 3 chr3 139312288 139312586 -88211992 + AluSq SINE Alu 1 297 -16 330 211 0 105 chr3 139312663 139312757 -88211821 + L1MC4 LINE L1 6614 6696 -1346 4049 118 44 16 chr3 139312757 139313437 -88211141 - L1PA15 LINE L1 -7 6158 5460 330 211 0 105 chr3 139313437 139313456 -88211122 + L1MC4 LINE L1 6696 6715 -1327 831 259 129 32 chr3 139314171 139314645 -88209933 - L1ME LINE L1 -356 5814 5295 1318 196 21 35 chr3 139315178 139315483 -88209095 + AluJb SINE Alu 1 301 0 349 265 77 8 chr3 139316948 139317065 -88207513 + L2 LINE L2 3189 3313 0 2091 121 7 23 chr3 139318713 139319020 -88205558 + AluSx SINE Alu 1 302 -10 308 331 71 19 chr3 139319321 139319475 -88205103 - MIR3 SINE MIR -41 167 6 1800 148 25 4 chr3 139319528 139319829 -88204749 + AluJo SINE Alu 1 307 0 500 307 58 21 chr3 139320447 139320636 -88203942 - MIR3 SINE MIR -7 201 6 1352 159 5 5 chr3 139320953 139321167 -88203411 + AluJb SINE Alu 85 298 -14 218 266 62 0 chr3 139321904 139321968 -88202610 + MIR3 SINE MIR 100 167 -41 243 0 0 0 chr3 139323599 139323626 -88200952 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 297 286 19 29 chr3 139324313 139324418 -88200160 + MIR3 SINE MIR 103 206 -2 893 141 0 0 chr3 139324809 139324937 -88199641 + FLAM_A SINE Alu 1 128 -5 1642 162 86 0 chr3 139325175 139325453 -88199125 + AluSp SINE Alu 1 302 -11 314 178 19 56 chr3 139327834 139327941 -88196637 - L1ME4a LINE L1 -56 6065 5963 1903 152 0 3 chr3 139330950 139331233 -88193345 + AluJb SINE Alu 1 282 -30 865 108 0 0 chr3 139331878 139331998 -88192580 + L1PA16 LINE L1 6038 6157 -9 2162 128 0 0 chr3 139333122 139333418 -88191160 + AluSx SINE Alu 1 296 -16 280 225 28 14 chr3 139333716 139333788 -88190790 + MER5A DNA MER1_type 38 121 -68 24 0 0 0 chr3 139335076 139335100 -88189478 + AT_rich Low_complexity Low_complexity 1 24 0 1566 156 22 18 chr3 139335746 139336063 -88188515 - AluSg SINE Alu 0 321 4 229 264 18 9 chr3 139336475 139336585 -88187993 + (TGGG)n Simple_repeat Simple_repeat 1 111 0 * 273 196 10 62 chr3 139336507 139336604 -88187974 + G-rich Low_complexity Low_complexity 4 95 0 542 136 37 0 chr3 139336724 139336805 -88187773 + FLAM_C SINE Alu 37 120 -23 240 35 0 0 chr3 139336805 139336834 -88187744 + (TAA)n Simple_repeat Simple_repeat 2 30 0 24 0 0 0 chr3 139336836 139336860 -88187718 + AT_rich Low_complexity Low_complexity 1 24 0 653 276 122 32 chr3 139337517 139337861 -88186717 + L1MC4a LINE L1 5529 5903 -1905 2410 74 0 0 chr3 139339071 139339368 -88185210 - AluY SINE Alu -14 297 1 1140 67 0 0 chr3 139339368 139339502 -88185076 - AluY SINE Alu -177 134 1 22 35 0 0 chr3 139339650 139339679 -88184899 + AT_rich Low_complexity Low_complexity 1 29 0 229 278 167 11 chr3 139339679 139339769 -88184809 - MIR SINE MIR -50 212 109 202 335 184 5 chr3 139339924 139340130 -88184448 + L3 LINE CR1 669 911 -666 598 316 123 39 chr3 139340324 139340789 -88183789 + L3 LINE CR1 1047 1550 -27 1563 173 19 42 chr3 139340862 139341175 -88183403 + AluJb SINE Alu 2 307 -5 1625 185 21 7 chr3 139342175 139342462 -88182116 - AluJo SINE Alu -12 300 10 1104 134 13 0 chr3 139343153 139343310 -88181268 + AluSg/x SINE Alu 138 296 -14 304 228 123 18 chr3 139344298 139344412 -88180166 - L1ME4a LINE L1 -3 6118 5993 2342 202 18 33 chr3 139344856 139345365 -88179213 - MER119 DNA MER1_type 0 583 83 1770 191 51 109 chr3 139345905 139346430 -88178148 + MLT1D LTR MaLR 3 497 -8 21 0 0 0 chr3 139346655 139346676 -88177902 + AT_rich Low_complexity Low_complexity 1 21 0 1385 155 124 4 chr3 139347378 139347636 -88176942 - AluJb SINE Alu -21 291 3 259 158 0 18 chr3 139347666 139347723 -88176855 + L1ME4a LINE L1 6049 6104 -17 318 271 175 48 chr3 139347785 139348183 -88176395 + L2 LINE L2 2759 3214 -99 207 100 0 0 chr3 139349884 139349914 -88174664 + (T)n Simple_repeat Simple_repeat 1 30 0 2160 119 3 3 chr3 139350342 139350644 -88173934 - AluSx SINE Alu -10 302 1 372 260 397 0 chr3 139351380 139351526 -88173052 + MIR SINE MIR 59 262 0 338 209 198 0 chr3 139351681 139351767 -88172811 + MIR SINE MIR 111 213 -49 2660 45 0 6 chr3 139352076 139352389 -88172189 - AluY SINE Alu 0 311 1 718 283 38 50 chr3 139352414 139352757 -88171821 + MLT1J2 LTR MaLR 1 339 -111 23 0 0 0 chr3 139353255 139353278 -88171300 + AT_rich Low_complexity Low_complexity 1 23 0 1805 162 0 17 chr3 139353425 139353722 -88170856 - AluJb SINE Alu -20 292 1 1784 198 83 3 chr3 139353849 139354187 -88170391 + MLT1A1 LTR MaLR 1 365 0 982 267 138 72 chr3 139354698 139354907 -88169671 + L1MEc LINE L1 790 984 -5412 2155 130 7 0 chr3 139354907 139355208 -88169370 + AluSx SINE Alu 1 303 -9 982 267 138 72 chr3 139355208 139356423 -88168155 + L1MEc LINE L1 984 2308 -4088 1600 174 11 0 chr3 139356423 139356687 -88167891 + AluJo SINE Alu 30 296 -16 5725 140 27 34 chr3 139356687 139356715 -88167863 + L1MA4 LINE L1 4985 5012 -1288 3880 94 10 8 chr3 139356715 139357227 -88167351 + MER75 DNA T2_type 2 514 0 5725 140 27 34 chr3 139357227 139358525 -88166053 + L1MA4 LINE L1 5012 6300 0 22 0 0 0 chr3 139358525 139358547 -88166031 + AT_rich Low_complexity Low_complexity 1 22 0 466 276 52 9 chr3 139358554 139358764 -88165814 + L1M4 LINE L1 4392 4610 -1536 302 323 70 36 chr3 139358776 139359086 -88165492 + L1M4 LINE L1 4723 5048 -1098 944 202 5 67 chr3 139359086 139359309 -88165269 + MER3 DNA MER1_type 1 209 0 302 323 70 36 chr3 139359309 139359354 -88165224 + L1M4 LINE L1 5048 5090 -1056 273 284 0 0 chr3 139359367 139359441 -88165137 - L1M4b LINE L1 -5357 1502 1429 240 173 0 19 chr3 139359492 139359544 -88165034 - L1M4b LINE L1 -5438 1421 1371 2371 64 17 3 chr3 139359554 139359849 -88164729 + AluY SINE Alu 1 299 -12 196 351 204 4 chr3 139359855 139360080 -88164498 + L2 LINE L2 2422 2691 -623 801 201 0 0 chr3 139362891 139363035 -88161543 + FRAM SINE Alu 13 156 -20 590 172 0 0 chr3 139363557 139363650 -88160928 + AluJ/FLAM SINE Alu 1 93 -219 538 200 195 45 chr3 139364053 139364253 -88160325 - MIR SINE MIR -18 244 15 1699 278 65 74 chr3 139364557 139365421 -88159157 + Charlie2b DNA MER1_type 122 977 -1805 397 285 44 0 chr3 139365421 139365438 -88159140 - L1MA10 LINE L1 -3 6331 6315 3373 206 58 54 chr3 139365438 139365995 -88158583 - L1ME1 LINE L1 -12 6154 5600 2504 165 33 58 chr3 139365995 139366467 -88158111 + LTR54 LTR ERV1 1 460 -50 300 52 0 52 chr3 139366467 139366525 -88158053 + (TAAA)n Simple_repeat Simple_repeat 2 56 0 2504 165 33 58 chr3 139366525 139366573 -88158005 + LTR54 LTR ERV1 460 508 -2 3373 206 58 54 chr3 139366573 139366686 -88157892 - L1ME1 LINE L1 -566 5600 5489 1958 142 19 10 chr3 139366686 139366995 -88157583 - AluSx SINE Alu 0 312 1 3373 206 58 54 chr3 139366995 139367192 -88157386 - L1ME1 LINE L1 -677 5489 5294 624 173 63 31 chr3 139367192 139367319 -88157259 - FLAM_A SINE Alu 0 133 3 3373 206 58 54 chr3 139367319 139367545 -88157033 - L1ME1 LINE L1 -872 5294 5030 428 203 181 44 chr3 139367546 139367728 -88156850 + Charlie2b DNA MER1_type 988 1194 -1588 1760 180 141 6 chr3 139367856 139368373 -88156205 + Charlie2b DNA MER1_type 2183 2769 -13 2082 130 0 3 chr3 139369755 139370062 -88154516 + AluSx SINE Alu 1 306 -6 357 230 122 56 chr3 139370311 139370428 -88154150 + L1ME3A LINE L1 5574 5711 -410 2054 123 0 23 chr3 139370428 139370728 -88153850 + AluJb SINE Alu 20 312 0 357 230 122 56 chr3 139370728 139370806 -88153772 + L1ME3A LINE L1 5711 5782 -339 2194 125 0 3 chr3 139371155 139371459 -88153119 - AluSq SINE Alu -10 303 1 1893 162 3 3 chr3 139372275 139372571 -88152007 + AluJo SINE Alu 1 296 -16 314 221 63 101 chr3 139373285 139373443 -88151135 - L1M2 LINE L1 -5749 1100 949 311 223 237 14 chr3 139373809 139373948 -88150630 + L1ME4a LINE L1 5631 5800 -321 1921 106 4 15 chr3 139374243 139374516 -88150062 - AluSx SINE Alu -4 308 39 547 263 96 26 chr3 139374517 139374787 -88149791 + L1ME4a LINE L1 5832 6120 -1 361 229 32 51 chr3 139374899 139375056 -88149522 - HAL1 LINE L1 -325 2182 2029 333 287 69 17 chr3 139375059 139375233 -88149345 + L1ME3A LINE L1 5988 6170 0 1645 216 168 94 chr3 139375266 139376023 -88148555 - HAL1 LINE L1 -473 2034 1123 301 122 41 0 chr3 139376023 139376072 -88148506 - U5 snRNA snRNA -65 51 1 1645 216 168 94 chr3 139376072 139376375 -88148203 - HAL1 LINE L1 -1384 1123 844 321 197 0 0 chr3 139376657 139376723 -88147855 + GA-rich Low_complexity Low_complexity 1 66 0 403 315 35 30 chr3 139376827 139377027 -88147551 - HAL1 LINE L1 -2001 506 306 271 194 60 0 chr3 139377309 139377376 -88147202 + L1ME4a LINE L1 6047 6117 -4 306 0 0 0 chr3 139377700 139377734 -88146844 + (TG)n Simple_repeat Simple_repeat 2 35 0 1692 184 3 0 chr3 139377968 139378296 -88146282 + AluJb SINE Alu 1 329 0 261 57 0 0 chr3 139379239 139379274 -88145304 + (TG)n Simple_repeat Simple_repeat 2 36 0 2751 16 0 3 chr3 139380501 139380804 -88143774 + AluYa5 SINE Alu 1 302 -9 22 88 0 0 chr3 139383065 139383122 -88141456 + GC_rich Low_complexity Low_complexity 1 57 0 204 298 24 48 chr3 139384152 139384236 -88140342 - L2 LINE L2 0 3272 3191 545 244 50 67 chr3 139384425 139384605 -88139973 + MIR SINE MIR 30 206 -56 1587 151 96 11 chr3 139384628 139384900 -88139678 + AluJb SINE Alu 1 295 -17 462 235 123 2 chr3 139384920 139385082 -88139496 - MIR SINE MIR -33 229 52 486 254 33 0 chr3 139385984 139386106 -88138472 - MIR SINE MIR -1 261 136 410 284 110 26 chr3 139386289 139386333 -88138245 - MIR3 SINE MIR -2 206 167 548 150 170 26 chr3 139386333 139386486 -88138092 - MER5B DNA MER1_type -3 175 1 410 284 110 26 chr3 139386486 139386596 -88137982 - MIR3 SINE MIR -41 167 39 320 276 27 65 chr3 139388284 139388469 -88136109 - MER5B DNA MER1_type 0 178 1 225 0 0 0 chr3 139388970 139388995 -88135583 + (T)n Simple_repeat Simple_repeat 1 25 0 278 331 77 0 chr3 139389000 139389169 -88135409 + L3 LINE CR1 1255 1436 -141 408 321 54 71 chr3 139390535 139390719 -88133859 - MIR SINE MIR -48 214 34 486 274 154 10 chr3 139391634 139391842 -88132736 - MIR SINE MIR -7 255 18 282 240 54 87 chr3 139392854 139393048 -88131530 - MIR SINE MIR -46 216 28 556 236 82 31 chr3 139393996 139394191 -88130387 + MER112 DNA MER1_type 1 205 -55 501 290 145 29 chr3 139394342 139394806 -88129772 + L2 LINE L2 2538 3053 -219 1327 106 35 31 chr3 139395249 139395363 -88129215 + MER30 DNA MER1_type 4 116 -114 2394 96 0 6 chr3 139395363 139395676 -88128902 + AluY SINE Alu 1 311 0 1327 106 35 31 chr3 139395676 139395787 -88128791 + MER30 DNA MER1_type 116 230 0 204 194 0 0 chr3 139395985 139396021 -88128557 - L3 LINE CR1 -3 1574 1539 749 216 52 47 chr3 139396836 139397015 -88127563 - MIR SINE MIR -2 260 78 540 113 0 0 chr3 139397015 139397095 -88127483 + MADE1 DNA Mariner 1 80 0 749 216 52 47 chr3 139397095 139397128 -88127450 - MIR SINE MIR -184 78 47 1721 170 0 27 chr3 139397169 139397469 -88127109 - AluJo SINE Alu -20 292 1 781 203 0 69 chr3 139398212 139398414 -88126164 - MER53 DNA DNA -1 188 1 230 234 128 11 chr3 139399524 139399618 -88124960 - MIR SINE MIR -68 140 36 546 312 45 0 chr3 139400686 139400888 -88123690 - MIR SINE MIR -32 230 20 23 0 0 0 chr3 139401010 139401033 -88123545 + AT_rich Low_complexity Low_complexity 1 23 0 883 230 142 47 chr3 139401039 139401393 -88123185 - HAL1 LINE L1 -2 2505 2087 1552 220 141 46 chr3 139401393 139402066 -88122512 - HsTC2a DNA MER2_type -4 740 4 883 230 142 47 chr3 139402066 139402220 -88122358 - HAL1 LINE L1 -420 2087 1949 1794 181 0 22 chr3 139402221 139402327 -88122251 - AluJo SINE Alu -2 310 203 3267 91 7 7 chr3 139402327 139402787 -88121791 + LTR46 LTR ERV1 1 460 0 1794 181 0 22 chr3 139402787 139402995 -88121583 - AluJo SINE Alu -109 203 3 2160 237 133 16 chr3 139403005 139403810 -88120768 - HAL1 LINE L1 -543 1964 1066 2391 85 3 0 chr3 139403890 139404184 -88120394 - AluSx SINE Alu -17 295 1 1114 221 142 34 chr3 139404187 139404681 -88119897 + L1MC5 LINE L1 7107 7653 -308 725 196 46 17 chr3 139404695 139404868 -88119710 + AluJo SINE Alu 123 300 -12 544 223 93 21 chr3 139404868 139405061 -88119517 + L1MC5 LINE L1 7703 7909 -52 452 263 92 37 chr3 139405078 139405295 -88119283 - HAL1 LINE L1 -1658 849 621 2161 118 6 10 chr3 139405656 139405970 -88118608 - AluSq SINE Alu 0 313 1 317 340 45 51 chr3 139405970 139406126 -88118452 - HAL1 LINE L1 -2333 174 20 288 333 77 13 chr3 139406532 139406688 -88117890 + L2 LINE L2 1831 1996 -1318 294 29 0 0 chr3 139408226 139408261 -88116317 + (TGGA)n Simple_repeat Simple_repeat 1 35 0 203 250 0 0 chr3 139408281 139408321 -88116257 + (TGGA)n Simple_repeat Simple_repeat 4 43 0 191 289 89 33 chr3 139408574 139408664 -88115914 + L2 LINE L2 3204 3298 -15 * 199 184 0 26 chr3 139408633 139408671 -88115907 + MIR SINE MIR 223 259 -3 358 215 172 0 chr3 139409030 139409123 -88115455 - MER81 DNA DNA -5 109 1 443 236 126 21 chr3 139409577 139409772 -88114806 - MIR SINE MIR -51 211 1 410 234 16 62 chr3 139411382 139411510 -88113068 + MIR SINE MIR 79 200 -62 260 288 0 0 chr3 139411574 139411640 -88112938 + MIR SINE MIR 185 250 -12 991 174 21 11 chr3 139411708 139411898 -88112680 + L1MD2 LINE L1 6154 6345 -14 26 0 0 0 chr3 139412102 139412128 -88112450 + AT_rich Low_complexity Low_complexity 1 26 0 247 226 24 71 chr3 139412149 139412233 -88112345 - MIR SINE MIR -80 182 103 375 293 5 83 chr3 139412489 139412636 -88111942 + MIR3 SINE MIR 17 145 -63 724 216 105 0 chr3 139412636 139412807 -88111771 - MER5A DNA MER1_type 0 189 1 375 293 5 83 chr3 139412807 139412864 -88111714 + MIR3 SINE MIR 145 205 -3 645 321 75 12 chr3 139413698 139414122 -88110456 + L2 LINE L2 2383 2833 -481 222 205 133 72 chr3 139414317 139414400 -88110178 + L2 LINE L2 3029 3116 -156 300 70 0 0 chr3 139414956 139414999 -88109579 + (GA)n Simple_repeat Simple_repeat 1 43 0 181 261 148 11 chr3 139416514 139416602 -88107976 - L2 LINE L2 -3 3269 3170 225 293 12 24 chr3 139416691 139416773 -88107805 + L2 LINE L2 3188 3268 -4 1114 261 56 47 chr3 139418980 139419359 -88105219 + L1MC5 LINE L1 4902 5296 -1165 2594 207 36 47 chr3 139419359 139420058 -88104520 + LTR8 LTR ERV1 1 691 0 1114 261 56 47 chr3 139420058 139420416 -88104162 + L1MC5 LINE L1 5296 5649 -812 1107 222 82 3 chr3 139420420 139420713 -88103865 + MER5C DNA MER1_type 6 321 -3 602 281 11 6 chr3 139420721 139420899 -88103679 + L1MC5 LINE L1 5648 5826 -1982 1075 173 0 17 chr3 139420899 139421078 -88103500 - AluJb SINE Alu -2 310 135 326 237 14 22 chr3 139421168 139421307 -88103271 + L1MC5 LINE L1 5872 6009 -1799 199 219 31 62 chr3 139421592 139421656 -88102922 + MIR3 SINE MIR 108 169 -39 2266 121 0 0 chr3 139421913 139422211 -88102367 - AluSq SINE Alu -15 298 1 24 32 0 0 chr3 139422220 139422251 -88102327 + AT_rich Low_complexity Low_complexity 1 31 0 1191 194 0 10 chr3 139422338 139422534 -88102044 + AluJo SINE Alu 1 194 -118 319 296 76 24 chr3 139422562 139422774 -88101804 + L1P4 LINE L1 5574 5802 -372 1171 219 128 63 chr3 139422822 139423488 -88101090 + L1MC5 LINE L1 7223 7931 -30 1571 52 0 6 chr3 139423856 139423865 -88100713 + (G)n Simple_repeat Simple_repeat 1 376 0 1571 52 0 6 chr3 139423865 139424235 -88100343 + (G)n Simple_repeat Simple_repeat 1 367 0 227 351 43 0 chr3 139475002 139475096 -88049482 - L2 LINE L2 -20 3293 3196 229 240 31 52 chr3 139475241 139475337 -88049241 - MLT1L LTR MaLR -13 602 509 2193 104 0 13 chr3 139475450 139475769 -88048809 + AluSg SINE Alu 1 310 0 230 180 180 0 chr3 139476051 139476112 -88048466 + LTR37B LTR ERV1 324 395 -73 2285 146 56 17 chr3 139476269 139476681 -88047897 - MSTC LTR MaLR 0 428 1 278 272 57 15 chr3 139478106 139478233 -88046345 - MIR SINE MIR -77 131 21 1257 184 0 9 chr3 139478549 139478766 -88045812 + AluJo SINE Alu 87 301 -11 283 259 46 9 chr3 139479210 139479318 -88045260 - MER5B DNA MER1_type -17 161 50 416 218 203 8 chr3 139480640 139480773 -88043805 + MIR SINE MIR 104 262 0 1096 147 22 0 chr3 139481304 139481488 -88043090 + MER5A DNA MER1_type 2 189 0 476 202 0 10 chr3 139481553 139481652 -88042926 - MER5B DNA MER1_type -31 147 50 454 229 44 55 chr3 139481665 139481848 -88042730 - L1MC4 LINE L1 -1 8041 7861 2295 112 0 0 chr3 139481891 139482187 -88042391 + AluSx SINE Alu 1 296 -16 181 293 75 88 chr3 139482275 139482422 -88042156 - L2 LINE L2 -2831 483 339 670 212 20 20 chr3 139482456 139482607 -88041971 - MER53 DNA DNA -38 151 1 576 181 9 0 chr3 139482722 139482838 -88041740 - MLT2D LTR ERVL -297 117 1 394 346 16 11 chr3 139482840 139483028 -88041550 - MER5A DNA MER1_type 0 189 1 2403 90 3 0 chr3 139485302 139485601 -88038977 + AluSp SINE Alu 1 300 -13 1744 164 17 6 chr3 139485763 139486111 -88038467 - L1MB3 LINE L1 0 6183 5832 1419 25 6 0 chr3 139488708 139488870 -88035708 + AluY SINE Alu 149 311 0 230 279 13 13 chr3 139489013 139489092 -88035486 + GA-rich Low_complexity Low_complexity 5 83 0 592 245 0 0 chr3 139489722 139489865 -88034713 + L1PA16 LINE L1 6024 6166 0 1749 152 25 41 chr3 139490329 139490644 -88033934 + AluJo SINE Alu 1 310 -2 487 312 91 10 chr3 139492929 139493128 -88031450 + MIR SINE MIR 47 261 -1 2302 121 0 3 chr3 139493367 139493674 -88030904 - AluSc SINE Alu -3 306 1 2175 115 7 0 chr3 139494077 139494372 -88030206 + AluSq SINE Alu 1 297 -16 540 278 23 36 chr3 139494491 139494701 -88029877 + MIR3 SINE MIR 3 208 0 406 265 63 46 chr3 139495087 139495281 -88029297 - MIR SINE MIR -54 154 11 195 129 0 0 chr3 139495927 139495958 -88028620 + (GGGA)n Simple_repeat Simple_repeat 3 33 0 266 233 22 33 chr3 139496202 139496292 -88028286 + GA-rich Low_complexity Low_complexity 1 89 0 196 289 115 18 chr3 139496299 139496480 -88028098 + MIR SINE MIR 6 200 -58 272 277 125 0 chr3 139497808 139497920 -88026658 - MIR SINE MIR -63 145 20 486 289 34 7 chr3 139498735 139498884 -88025694 - MIR SINE MIR -35 227 75 944 200 42 23 chr3 139502005 139502220 -88022358 - MER20 DNA MER1_type 0 219 1 200 194 0 0 chr3 139502965 139503001 -88021577 + (TG)n Simple_repeat Simple_repeat 2 37 0 207 0 0 0 chr3 139503145 139503168 -88021410 + (CTG)n Simple_repeat Simple_repeat 2 24 0 229 226 26 104 chr3 139505316 139505396 -88019182 + MIR3 SINE MIR 78 148 -60 746 223 22 0 chr3 139505396 139505580 -88018998 + MER5A DNA MER1_type 1 188 -1 229 226 26 104 chr3 139505580 139505614 -88018964 + MIR3 SINE MIR 148 183 -25 320 309 71 16 chr3 139506215 139506341 -88018237 + L2 LINE L2 3175 3307 -6 211 185 0 46 chr3 139506438 139506503 -88018075 + GA-rich Low_complexity Low_complexity 2 63 0 282 95 0 0 chr3 139507423 139507465 -88017113 + (TG)n Simple_repeat Simple_repeat 1 42 0 207 223 165 74 chr3 139507742 139507863 -88016715 - L2 LINE L2 -3 3269 3138 182 329 35 24 chr3 139507922 139508007 -88016571 + MER5B DNA MER1_type 30 115 -63 469 280 160 11 chr3 139508142 139508352 -88016226 + MIR SINE MIR 2 234 -28 2376 99 0 3 chr3 139508444 139508746 -88015832 + AluSc SINE Alu 1 301 -8 431 218 209 29 chr3 139509959 139510165 -88014413 + MIR SINE MIR 20 262 0 251 268 24 12 chr3 139511139 139511221 -88013357 + MIR SINE MIR 166 248 -14 603 253 28 52 chr3 139511326 139511543 -88013035 - MIR SINE MIR -33 229 19 1315 346 152 19 chr3 139512094 139512720 -88011858 + L3 LINE CR1 166 708 -869 2465 171 31 4 chr3 139512720 139513175 -88011403 + MLT1C LTR MaLR 1 467 0 1315 346 152 19 chr3 139513175 139513736 -88010842 + L3 LINE CR1 708 1510 -67 1581 181 8 50 chr3 139514217 139514483 -88010095 + MER2 DNA MER2_type 1 277 -67 180 0 0 0 chr3 139514483 139514503 -88010075 + (TTTAA)n Simple_repeat Simple_repeat 3 22 0 1549 203 7 30 chr3 139514503 139514798 -88009780 - AluJo SINE Alu -24 288 1 2461 61 17 0 chr3 139514807 139515104 -88009474 - AluY SINE Alu -9 302 1 1581 181 8 50 chr3 139515104 139515185 -88009393 + MER2 DNA MER2_type 284 344 0 513 194 29 112 chr3 139515482 139515542 -88009036 - MER5A DNA MER1_type 0 189 126 2262 120 0 13 chr3 139515542 139515850 -88008728 + AluSx SINE Alu 1 304 -8 513 194 29 112 chr3 139515850 139515995 -88008583 - MER5A DNA MER1_type -63 126 1 345 343 27 7 chr3 139516478 139516624 -88007954 - L3 LINE CR1 -561 1016 868 485 251 18 101 chr3 139517116 139517230 -88007348 + MIR SINE MIR 48 137 -125 1734 184 25 0 chr3 139517230 139517512 -88007066 + AluJb SINE Alu 1 289 -23 485 251 18 101 chr3 139517512 139517616 -88006962 + MIR SINE MIR 137 248 -14 1119 243 56 3 chr3 139517985 139518289 -88006289 + L1ME4a LINE L1 5629 5948 -173 514 235 85 26 chr3 139518566 139518719 -88005859 - MER5B DNA MER1_type 0 178 17 222 227 0 0 chr3 139519715 139519759 -88004819 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 187 337 54 22 chr3 139519991 139520083 -88004495 - MIR3 SINE MIR -7 201 107 264 306 60 37 chr3 139520089 139520223 -88004355 - L3b LINE CR1 -198 1385 1249 315 0 0 0 chr3 139521242 139521277 -88003301 + (CA)n Simple_repeat Simple_repeat 1 35 0 352 155 0 0 chr3 139521736 139521794 -88002784 + L2 LINE L2 3227 3284 -29 240 128 0 43 chr3 139522843 139522890 -88001688 + Charlie8 DNA MER1_type 1384 1428 -989 231 309 48 12 chr3 139523344 139523428 -88001150 + L2 LINE L2 3170 3256 -16 274 252 10 29 chr3 139525679 139525782 -87998796 + GA-rich Low_complexity Low_complexity 1 101 0 314 209 45 0 chr3 139526312 139526379 -87998199 + MIR SINE MIR 106 175 -87 504 0 0 0 chr3 139528542 139528598 -87995980 + (TC)n Simple_repeat Simple_repeat 1 56 0 225 0 0 0 chr3 139528929 139528954 -87995624 + (TTCC)n Simple_repeat Simple_repeat 1 25 0 348 320 40 55 chr3 139528998 139529270 -87995308 - L2 LINE L2 -108 3164 2897 444 346 16 5 chr3 139529337 139529522 -87995056 + MIR3 SINE MIR 17 203 -5 2003 250 154 10 chr3 139529679 139530629 -87993949 + L2 LINE L2 2165 3271 -42 193 179 26 0 chr3 139530688 139530727 -87993851 - MIR SINE MIR -109 153 114 2486 84 0 3 chr3 139531549 139531859 -87992719 + AluSp SINE Alu 1 309 -4 1963 142 13 31 chr3 139533399 139533717 -87990861 + AluJo SINE Alu 1 312 0 1872 179 37 2 chr3 139533777 139534186 -87990392 + L1MB3 LINE L1 5759 6181 -2 21 36 0 0 chr3 139534221 139534249 -87990329 + AT_rich Low_complexity Low_complexity 1 28 0 512 219 123 32 chr3 139534472 139534627 -87989951 - MER5B DNA MER1_type 0 178 10 901 260 20 12 chr3 139534628 139534874 -87989704 + MIR SINE MIR 15 262 0 328 356 7 22 chr3 139535821 139535956 -87988622 - MIR3 SINE MIR -34 174 42 333 227 93 0 chr3 139536595 139536670 -87987908 + L2 LINE L2 3231 3312 -1 209 333 0 0 chr3 139538660 139538717 -87985861 + L2 LINE L2 3248 3304 -9 245 95 0 24 chr3 139538801 139538843 -87985735 + (GAAAA)n Simple_repeat Simple_repeat 1 41 0 579 231 69 0 chr3 139538920 139539050 -87985528 + MIR SINE MIR 76 214 -48 243 169 75 0 chr3 139539102 139539184 -87985394 + L1ME LINE L1 5377 5431 -690 1894 145 0 33 chr3 139539201 139539505 -87985073 + AluJo SINE Alu 1 294 -18 213 238 12 38 chr3 139540874 139540954 -87983624 + (TAGA)n Simple_repeat Simple_repeat 1 78 0 940 290 102 41 chr3 139541352 139541624 -87982954 + MLT1L LTR MaLR 1 234 -277 2003 104 45 0 chr3 139541624 139541929 -87982649 + AluSg SINE Alu 1 317 0 940 290 102 41 chr3 139541929 139542197 -87982381 + MLT1L LTR MaLR 234 484 -27 2245 102 0 13 chr3 139542251 139542554 -87982024 + AluSg SINE Alu 1 299 -11 301 346 39 31 chr3 139543650 139543777 -87980801 + MIR SINE MIR 65 192 -70 357 298 113 33 chr3 139544323 139544474 -87980104 - L2 LINE L2 0 3272 3110 622 267 42 6 chr3 139545319 139545484 -87979094 - MIR3 SINE MIR -10 198 28 2512 70 3 0 chr3 139545558 139545857 -87978721 - AluSp SINE Alu -13 300 1 264 321 45 19 chr3 139546046 139546088 -87978490 - L1MB1 LINE L1 -199 5969 5928 1016 259 32 11 chr3 139546088 139546458 -87978120 - L1ME4a LINE L1 -199 5922 5545 454 344 32 0 chr3 139546678 139546835 -87977743 - MER5B DNA MER1_type -16 162 1 1047 161 6 0 chr3 139547130 139547291 -87977287 + FRAM SINE Alu 1 162 -4 237 296 118 16 chr3 139547298 139547484 -87977094 + L1MC4a LINE L1 5729 5933 -1875 2577 86 0 0 chr3 139547553 139547866 -87976712 + AluSp SINE Alu 1 313 0 214 275 12 62 chr3 139548129 139548209 -87976369 - MIR SINE MIR -83 179 104 43 76 0 0 chr3 139549150 139549242 -87975336 + AT_rich Low_complexity Low_complexity 1 92 0 2166 133 3 19 chr3 139549263 139549580 -87974998 - AluJb SINE Alu 0 312 1 356 279 36 42 chr3 139549598 139549764 -87974814 - MIR SINE MIR -58 150 5 458 128 32 21 chr3 139549913 139550007 -87974571 + L1ME3A LINE L1 6074 6168 -2 252 340 56 7 chr3 139550121 139550265 -87974313 + L2 LINE L2 2636 2786 -528 321 270 180 26 chr3 139550320 139550532 -87974046 + MIR SINE MIR 2 252 -10 1894 158 89 34 chr3 139551180 139551616 -87972962 + MLT1C LTR MaLR 1 460 -7 237 108 0 0 chr3 139551715 139551752 -87972826 + (CAT)n Simple_repeat Simple_repeat 3 39 0 793 238 105 5 chr3 139551752 139551962 -87972616 - MIR SINE MIR -6 256 26 181 352 118 28 chr3 139552909 139553508 -87971070 - L2 LINE L2 -819 2495 1843 362 157 118 59 chr3 139553792 139553894 -87970684 - LTR67 LTR ERVL -1 556 449 1943 152 3 7 chr3 139553896 139554193 -87970385 + AluJo SINE Alu 1 296 -16 2302 218 18 32 chr3 139554204 139554644 -87969934 - MLT1F1 LTR MaLR 0 567 135 2298 115 0 0 chr3 139554644 139554949 -87969629 - AluSx SINE Alu -7 305 1 2302 218 18 32 chr3 139554949 139555078 -87969500 - MLT1F1 LTR MaLR -432 135 6 361 195 69 0 chr3 139555478 139555565 -87969013 - MER21B LTR ERV1 -113 750 658 303 250 93 56 chr3 139556847 139556955 -87967623 - L2 LINE L2 -5 3267 3156 276 185 0 0 chr3 139556957 139557011 -87967567 + (TG)n Simple_repeat Simple_repeat 2 55 0 652 242 76 0 chr3 139557122 139557279 -87967299 - MIR SINE MIR -48 214 46 3830 155 19 13 chr3 139557296 139557988 -87966590 - L1MB2 LINE L1 0 6171 5476 405 156 31 10 chr3 139558002 139558098 -87966480 + CT-rich Low_complexity Low_complexity 3 100 0 694 135 11 49 chr3 139558116 139558301 -87966277 + CT-rich Low_complexity Low_complexity 3 180 0 1909 179 87 2 chr3 139558301 139558470 -87966108 - L1MB2 LINE L1 -709 5474 5321 405 0 0 0 chr3 139558470 139558515 -87966063 + (TG)n Simple_repeat Simple_repeat 1 45 0 1909 179 87 2 chr3 139558515 139558889 -87965689 - L1MB2 LINE L1 -862 5321 4905 975 152 52 5 chr3 139558894 139559085 -87965493 - L1MB3 LINE L1 -40 6143 5944 2618 86 81 8 chr3 139559544 139559941 -87964637 - MSTA LTR MaLR -2 426 1 729 212 104 36 chr3 139559966 139560188 -87964390 - L1ME3A LINE L1 -66 6104 5868 182 273 39 65 chr3 139560724 139560801 -87963777 - MIR3 SINE MIR -23 185 111 1829 168 14 0 chr3 139560922 139561219 -87963359 + AluJo SINE Alu 1 301 -11 1057 199 107 42 chr3 139561220 139561453 -87963125 - L1ME2 LINE L1 -108 6056 5839 210 37 0 0 chr3 139561453 139561480 -87963098 + (TC)n Simple_repeat Simple_repeat 2 28 0 1057 199 107 42 chr3 139561480 139561555 -87963023 - L1ME2 LINE L1 -325 5839 5770 2068 153 36 43 chr3 139561555 139561948 -87962630 - MLT1B LTR MaLR 0 390 1 1057 199 107 42 chr3 139561948 139562081 -87962497 - L1ME2 LINE L1 -394 5770 5495 216 152 52 139 chr3 139562083 139562204 -87962374 - MIR SINE MIR -62 146 32 797 292 128 44 chr3 139562252 139563055 -87961523 - L2 LINE L2 0 3313 2440 226 167 144 89 chr3 139563107 139563197 -87961381 + L2 LINE L2 3218 3312 -1 1929 133 59 9 chr3 139563224 139563547 -87961031 - MER1B DNA MER1_type 0 339 1 3152 142 33 40 chr3 139563604 139563943 -87960635 - L1MB5 LINE L1 -12 6162 5827 1582 188 56 3 chr3 139563943 139564109 -87960469 - AluJo SINE Alu -9 303 114 194 0 0 37 chr3 139564109 139564136 -87960442 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 1582 188 56 3 chr3 139564136 139564257 -87960321 - AluJo SINE Alu -198 114 1 3152 142 33 40 chr3 139564257 139564515 -87960063 - L1MB5 LINE L1 -347 5827 5569 365 251 174 30 chr3 139564609 139564776 -87959802 + MIR SINE MIR 60 250 -12 346 292 100 0 chr3 139565700 139565830 -87958748 + MIR SINE MIR 50 192 -70 234 373 40 60 chr3 139566593 139566891 -87957687 - L2 LINE L2 -3 3269 2978 193 267 27 27 chr3 139567149 139567224 -87957354 - L2 LINE L2 -1 3271 3197 355 288 8 16 chr3 139567230 139567355 -87957223 + L1ME4a LINE L1 5676 5799 -322 1396 199 33 39 chr3 139567364 139567725 -87956853 - MLT1A1 LTR MaLR 0 365 7 2450 96 0 0 chr3 139567726 139568038 -87956540 + AluSx SINE Alu 1 312 0 366 215 37 84 chr3 139568087 139568194 -87956384 + L1ME4a LINE L1 5797 5898 -223 420 213 59 22 chr3 139568225 139568361 -87956217 + L1ME4a LINE L1 5977 6117 -4 42 36 0 0 chr3 139569017 139569073 -87955505 + AT_rich Low_complexity Low_complexity 1 56 0 528 294 44 0 chr3 139569090 139569250 -87955328 - MIR3 SINE MIR -39 169 3 251 319 43 9 chr3 139569681 139569797 -87954781 + L2 LINE L2 3153 3272 0 417 235 232 6 chr3 139570138 139570311 -87954267 + MIR SINE MIR 47 250 -12 303 28 0 0 chr3 139570831 139570867 -87953711 + (TG)n Simple_repeat Simple_repeat 1 36 0 372 300 169 42 chr3 139572082 139572319 -87952259 - L2 LINE L2 -12 3301 3035 1512 144 55 103 chr3 139572319 139572756 -87951822 - Charlie4a DNA MER1_type -51 457 42 341 224 122 22 chr3 139572890 139573160 -87951418 + LTR37B LTR ERV1 114 463 -5 349 239 314 33 chr3 139573174 139573655 -87950923 - L2 LINE L2 -1010 2304 1689 202 225 92 108 chr3 139573672 139573792 -87950786 - MER5A DNA MER1_type -32 157 40 306 253 108 0 chr3 139574196 139574279 -87950299 + MIR SINE MIR 60 151 -111 765 246 77 9 chr3 139575094 139575314 -87949264 + MIR SINE MIR 28 262 0 375 23 0 0 chr3 139575485 139575529 -87949049 + (CA)n Simple_repeat Simple_repeat 1 44 0 2455 91 0 0 chr3 139575754 139576052 -87948526 - AluSg SINE Alu -12 298 1 184 377 26 0 chr3 139576089 139576166 -87948412 - L2 LINE L2 -7 3265 3187 1523 177 425 6 chr3 139576379 139576922 -87947656 - L1MC4 LINE L1 -1 8041 7271 1768 76 20 8 chr3 139577117 139577367 -87947211 - AluY SINE Alu -4 307 55 2246 99 3 40 chr3 139577684 139578008 -87946570 - AluSx SINE Alu 0 312 1 307 299 88 20 chr3 139578523 139578670 -87945908 - MIR SINE MIR -70 192 36 309 284 25 62 chr3 139579599 139579750 -87944828 - MIR SINE MIR -62 146 4 2400 48 0 0 chr3 139580498 139580771 -87943807 - AluY SINE Alu -4 307 35 693 308 76 7 chr3 139580840 139581179 -87943399 - L1ME4a LINE L1 -293 5828 5466 199 305 126 63 chr3 139581394 139581696 -87942882 + L3 LINE CR1 1192 1512 -65 1011 262 73 21 chr3 139582088 139582473 -87942105 - MLT1J LTR MaLR -30 481 77 292 296 161 31 chr3 139582552 139582714 -87941864 - MIR3 SINE MIR -17 191 9 696 260 50 0 chr3 139583632 139583813 -87940765 + MIR SINE MIR 33 222 -40 540 311 35 22 chr3 139584031 139584259 -87940319 - MIR SINE MIR -12 250 20 205 156 0 0 chr3 139585034 139585066 -87939512 + (TTG)n Simple_repeat Simple_repeat 3 34 0 210 200 0 0 chr3 139586533 139586573 -87938005 - L2 LINE L2 -14 3258 3219 374 322 45 23 chr3 139587571 139587748 -87936830 - MIR SINE MIR -50 212 32 299 218 92 58 chr3 139587757 139587844 -87936734 + MIR SINE MIR 16 105 -157 2949 245 87 59 chr3 139587875 139588511 -87936067 - HAL1 LINE L1 -545 1962 1345 689 217 16 0 chr3 139588511 139588640 -87935938 - FLAM_A SINE Alu -2 131 1 2949 245 87 59 chr3 139588640 139589687 -87934891 - HAL1 LINE L1 -1162 1345 237 1382 176 71 22 chr3 139589939 139590262 -87934316 + MER2 DNA MER2_type 7 345 0 221 358 33 33 chr3 139594069 139594189 -87930389 - MIR SINE MIR -59 149 30 207 0 0 0 chr3 139594586 139594609 -87929969 + (TG)n Simple_repeat Simple_repeat 1 23 0 292 253 63 44 chr3 139596402 139596544 -87928034 + MIR SINE MIR 56 191 -63 2394 103 3 0 chr3 139596795 139597096 -87927482 + AluSp SINE Alu 1 302 -11 481 277 0 0 chr3 139597125 139597244 -87927334 + MIR SINE MIR 30 148 -60 1652 162 42 11 chr3 139597533 139597817 -87926761 - AluJb SINE Alu -19 293 1 218 204 0 20 chr3 139600373 139600422 -87924156 + (CA)n Simple_repeat Simple_repeat 1 48 0 409 236 57 16 chr3 139600603 139600726 -87923852 - L2 LINE L2 0 3313 3186 934 191 33 6 chr3 139602522 139602705 -87921873 - MER5A DNA MER1_type -1 188 1 334 268 39 39 chr3 139602964 139603091 -87921487 - MER5B DNA MER1_type -41 137 11 2572 84 0 0 chr3 139603228 139603539 -87921039 - AluSx SINE Alu -1 311 1 210 150 0 0 chr3 139604936 139604976 -87919602 + (TCTCCC)n Simple_repeat Simple_repeat 1 40 0 309 51 0 0 chr3 139607059 139607098 -87917480 + (CA)n Simple_repeat Simple_repeat 1 39 0 786 153 0 8 chr3 139608738 139608869 -87915709 + FLAM_A SINE Alu 1 130 -3 1768 160 18 11 chr3 139609132 139609413 -87915165 - AluJo SINE Alu -16 296 14 344 336 25 0 chr3 139609757 139609879 -87914699 - L3 LINE CR1 -476 1101 977 294 29 0 0 chr3 139610095 139610130 -87914448 + (CA)n Simple_repeat Simple_repeat 1 35 0 417 283 87 78 chr3 139610138 139610241 -87914337 - L1ME4a LINE L1 -219 5902 5801 887 191 62 19 chr3 139610241 139610451 -87914127 - MER20 DNA MER1_type 0 219 1 417 283 87 78 chr3 139610451 139610651 -87913927 - L1ME4a LINE L1 -320 5801 5591 2425 91 0 0 chr3 139610651 139610949 -87913629 + AluSq SINE Alu 1 298 -15 417 283 87 78 chr3 139610949 139611082 -87913496 - L1ME4a LINE L1 -530 5591 5461 655 341 161 18 chr3 139611097 139611487 -87913091 - L3 LINE CR1 -756 821 376 301 302 116 0 chr3 139611589 139611718 -87912860 - HAL1 LINE L1 -2180 327 184 1005 168 12 6 chr3 139611762 139611935 -87912643 + FAM SINE Alu 1 174 -1 4237 143 31 33 chr3 139612031 139612051 -87912527 + L1MB4 LINE L1 5374 5393 -787 2337 117 0 0 chr3 139612051 139612358 -87912220 + AluSx SINE Alu 3 309 -3 4237 143 31 33 chr3 139612358 139613146 -87911432 + L1MB4 LINE L1 5393 6180 0 361 175 58 57 chr3 139613159 139613256 -87911322 - Charlie5 DNA MER1_type -2538 74 1 553 162 0 27 chr3 139616158 139616343 -87908235 + (CCTG)n Simple_repeat Simple_repeat 1 180 0 909 132 0 7 chr3 139616344 139616589 -87907989 + (TTCC)n Simple_repeat Simple_repeat 1 421 0 211 296 28 0 chr3 139617209 139617280 -87907298 - L2 LINE L2 -16 3256 3184 650 276 68 65 chr3 139617660 139617982 -87906596 + MER102b DNA MER1_type 3 325 -16 334 268 39 39 chr3 139618707 139618834 -87905744 - MER5B DNA MER1_type -41 137 11 2429 95 3 0 chr3 139618971 139619276 -87905302 - AluSg SINE Alu -1 309 4 588 288 95 19 chr3 139619331 139619596 -87904982 - MLT1L LTR MaLR -27 509 235 1579 102 5 0 chr3 139619599 139619842 -87904736 - AluSg/x SINE Alu 0 319 76 473 204 6 0 chr3 139619960 139620127 -87904451 + CT-rich Low_complexity Low_complexity 1 168 0 24 67 0 0 chr3 139620443 139620488 -87904090 + AT_rich Low_complexity Low_complexity 1 45 0 198 200 0 0 chr3 139621848 139621888 -87902690 + L2 LINE L2 3219 3258 -14 345 343 27 7 chr3 139623674 139623820 -87900758 - L3 LINE CR1 -561 1016 868 376 224 61 0 chr3 139624305 139624403 -87900175 + MIR SINE MIR 46 149 -113 515 299 85 15 chr3 139624833 139625161 -87899417 - L1ME4a LINE L1 -21 6100 5750 188 259 0 17 chr3 139625429 139625487 -87899091 - MIR SINE MIR -5 257 201 324 189 11 44 chr3 139625857 139625947 -87898631 + MIR3 SINE MIR 98 184 -24 465 235 42 0 chr3 139626756 139626875 -87897703 + MIR3 SINE MIR 34 157 -51 359 190 15 95 chr3 139626878 139627015 -87897563 + MER112 DNA MER1_type 1 126 -134 795 219 84 0 chr3 139627113 139627291 -87897287 + MER58A DNA MER1_type 2 194 -30 2270 102 0 40 chr3 139627724 139628049 -87896529 - AluSx SINE Alu 0 312 1 296 287 107 8 chr3 139628564 139628686 -87895892 - MIR SINE MIR -70 192 59 309 276 22 60 chr3 139629639 139629773 -87894805 - MIR SINE MIR -114 148 20 410 296 91 28 chr3 139630683 139630859 -87893719 - MIR3 SINE MIR -5 203 17 214 310 45 45 chr3 139631184 139631339 -87893239 + L2 LINE L2 3116 3270 -2 2399 160 24 47 chr3 139632338 139632564 -87892014 - L1MB2 LINE L1 0 6171 5941 225 0 0 0 chr3 139632564 139632589 -87891989 + (TA)n Simple_repeat Simple_repeat 2 26 0 700 192 0 0 chr3 139632593 139632713 -87891865 - FLAM_A SINE Alu -13 120 1 2399 160 24 47 chr3 139632713 139633019 -87891559 - L1MB2 LINE L1 -233 5938 5646 262 330 97 0 chr3 139633868 139633971 -87890607 + L2 LINE L2 3156 3268 -4 1780 159 27 17 chr3 139634158 139634453 -87890125 + AluJo SINE Alu 1 298 -14 452 265 27 27 chr3 139635439 139635586 -87888992 + MIR SINE MIR 48 194 -68 180 388 60 9 chr3 139635812 139635928 -87888650 + L2 LINE L2 2250 2371 -943 428 253 203 13 chr3 139636990 139637148 -87887430 - MIR SINE MIR -62 200 13 180 327 0 0 chr3 139637650 139637705 -87886873 - L2 LINE L2 -8 3264 3210 280 231 221 10 chr3 139637837 139637941 -87886637 - MIR SINE MIR -70 192 67 1534 164 4 12 chr3 139638182 139638432 -87886146 + AluJo SINE Alu 1 248 -64 691 235 20 7 chr3 139640436 139640589 -87883989 - MIR SINE MIR 0 262 108 219 296 56 0 chr3 139642739 139642810 -87881768 - MIR3 SINE MIR -130 78 4 547 337 56 5 chr3 139642817 139643013 -87881565 - L3 LINE CR1 -193 1384 1179 208 286 200 0 chr3 139643059 139643164 -87881414 - L2 LINE L2 -9 3263 3138 251 227 227 53 chr3 139643175 139643307 -87881271 - HAL1 LINE L1 -1935 572 418 208 229 0 124 chr3 139643539 139643644 -87880934 - L3 LINE CR1 -647 930 839 1489 128 0 34 chr3 139643686 139643920 -87880658 - AluJo SINE Alu -2 310 85 364 244 212 21 chr3 139644152 139644345 -87880233 - L1MC4a LINE L1 -1959 5849 5620 200 257 57 14 chr3 139644386 139644456 -87880122 - L3 LINE CR1 -770 807 735 247 235 44 15 chr3 139644936 139645004 -87879574 - MIR SINE MIR -76 132 63 232 280 93 0 chr3 139645909 139645984 -87878594 - L2 LINE L2 -40 3232 3151 1867 155 7 0 chr3 139646189 139646460 -87878118 + AluJo SINE Alu 11 283 -29 1207 127 0 0 chr3 139646460 139646618 -87877960 + AluSg/x SINE Alu 134 291 -21 24 32 0 0 chr3 139646636 139646667 -87877911 + AT_rich Low_complexity Low_complexity 1 31 0 202 293 80 0 chr3 139647297 139647372 -87877206 - MIR SINE MIR -93 169 89 188 354 70 32 chr3 139648351 139648509 -87876069 + L3 LINE CR1 60 223 -1354 195 335 55 67 chr3 139648847 139649011 -87875567 + L3 LINE CR1 646 807 -770 238 243 68 10 chr3 139649028 139649131 -87875447 - L1ME4a LINE L1 -8 6113 6005 1548 160 0 0 chr3 139649152 139649436 -87875142 - AluJo SINE Alu 0 365 82 267 262 103 14 chr3 139650821 139650966 -87873612 - L1ME4a LINE L1 -1 6120 5963 1709 141 109 14 chr3 139651149 139651432 -87873146 - AluJo SINE Alu -2 310 1 2281 83 45 0 chr3 139651656 139651944 -87872634 + AluSg SINE Alu 1 301 -9 838 296 87 38 chr3 139651954 139652581 -87871997 - L1MC4a LINE L1 -774 5406 5288 338 336 85 35 chr3 139652588 139652714 -87871864 - L1MC4a LINE L1 -871 5275 5157 674 255 41 64 chr3 139652714 139652981 -87871597 - MIR SINE MIR 0 262 2 338 336 85 35 chr3 139652981 139653155 -87871423 - L1MC4a LINE L1 -989 5157 4956 1905 175 0 3 chr3 139653155 139653441 -87871137 - AluJo SINE Alu -27 285 1 338 336 85 35 chr3 139653441 139653457 -87871121 - L1MC4a LINE L1 -1190 4956 4942 598 252 31 51 chr3 139653495 139653749 -87870829 - L1ME4a LINE L1 -245 5876 5628 661 279 87 53 chr3 139655014 139655588 -87868990 - L2 LINE L2 -38 3275 2682 239 267 185 44 chr3 139656074 139656209 -87868369 - MER117 DNA MER1_type -40 157 4 21 36 0 0 chr3 139656944 139656972 -87867606 + AT_rich Low_complexity Low_complexity 1 28 0 2393 93 0 7 chr3 139658294 139658596 -87865982 + AluY SINE Alu 1 300 -11 2412 78 0 13 chr3 139659794 139660103 -87864475 + AluY SINE Alu 1 305 -6 535 243 133 23 chr3 139660304 139660477 -87864101 + MIR SINE MIR 39 230 -32 2162 127 32 86 chr3 139661907 139662001 -87862577 - MLT1B LTR MaLR 0 390 292 2186 104 30 3 chr3 139662001 139662298 -87862280 - AluSx SINE Alu -7 305 1 2162 127 32 86 chr3 139662298 139662612 -87861966 - MLT1B LTR MaLR -98 292 4 525 261 187 15 chr3 139663264 139663467 -87861111 + MIR SINE MIR 16 253 -9 1931 165 0 3 chr3 139663472 139663769 -87860809 + AluJb SINE Alu 1 296 -16 337 284 64 9 chr3 139663878 139663987 -87860591 - MIR SINE MIR -72 190 76 589 227 38 8 chr3 139664881 139665013 -87859565 - MIR SINE MIR -112 150 15 1187 102 0 7 chr3 139666916 139667139 -87857439 + (CCTG)n Simple_repeat Simple_repeat 1 224 -236 1071 94 0 0 chr3 139667139 139667319 -87857259 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1187 102 0 7 chr3 139667319 139667380 -87857198 + (CCTG)n Simple_repeat Simple_repeat 224 460 0 183 229 108 48 chr3 139667402 139667485 -87857093 - L2 LINE L2 -34 3238 3151 24 67 0 0 chr3 139667687 139667732 -87856846 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr3 139670533 139670563 -87854015 + AT_rich Low_complexity Low_complexity 1 30 0 232 239 15 45 chr3 139672496 139672563 -87852015 + MER5A DNA MER1_type 77 141 -48 256 294 111 16 chr3 139672616 139672742 -87851836 - MIR3 SINE MIR -59 149 12 199 333 206 0 chr3 139673221 139673347 -87851231 + L2 LINE L2 3161 3312 -1 306 342 60 0 chr3 139673395 139673544 -87851034 - MIR SINE MIR -60 202 45 682 285 73 7 chr3 139673545 139673819 -87850759 - LTR16C LTR ERVL 0 491 200 600 283 20 60 chr3 139674641 139674892 -87849686 - Charlie8 DNA MER1_type -2174 243 3 223 296 28 0 chr3 139675275 139675346 -87849232 + L2 LINE L2 3184 3256 -16 709 336 31 8 chr3 139675859 139676115 -87848463 - MIR SINE MIR 0 262 1 1318 201 34 0 chr3 139677694 139677962 -87846616 + AluJo SINE Alu 36 312 0 355 172 58 58 chr3 139680199 139680286 -87844292 + Charlie5 DNA MER1_type 1 74 -2538 4606 158 30 44 chr3 139680309 139681096 -87843482 - L1MB4 LINE L1 0 6180 5404 2324 120 0 0 chr3 139681096 139681405 -87843173 - AluSx SINE Alu -3 309 1 4606 158 30 44 chr3 139681405 139681850 -87842728 - L1MB4 LINE L1 -776 5404 4954 396 139 0 25 chr3 139681850 139681929 -87842649 - L1MB4 LINE L1 -2 6178 6102 2393 94 0 0 chr3 139682314 139682612 -87841966 + AluSx SINE Alu 1 298 -14 1134 221 39 14 chr3 139682612 139682892 -87841686 - L1MB4 LINE L1 -1210 4936 4650 3963 199 77 19 chr3 139682898 139684078 -87840500 - L1MD2 LINE L1 -240 6119 4831 1037 155 6 50 chr3 139684078 139684282 -87840296 + FAM SINE Alu 1 175 0 3963 199 77 19 chr3 139684282 139684561 -87840017 - L1MD2 LINE L1 -1528 4831 4570 373 224 234 0 chr3 139684692 139684799 -87839779 + L1MC4 LINE L1 7911 8042 0 267 31 0 0 chr3 139685400 139685432 -87839146 + (CA)n Simple_repeat Simple_repeat 2 33 0 412 333 16 0 chr3 139685485 139685608 -87838970 - L3 LINE CR1 -476 1101 977 294 29 0 0 chr3 139685825 139685860 -87838718 + (CA)n Simple_repeat Simple_repeat 1 35 0 372 279 87 78 chr3 139685868 139685971 -87838607 - L1ME4a LINE L1 -219 5902 5801 989 186 62 19 chr3 139685971 139686181 -87838397 - MER20 DNA MER1_type 0 219 1 372 279 87 78 chr3 139686181 139686381 -87838197 - L1ME4a LINE L1 -320 5801 5591 2443 87 0 0 chr3 139686381 139686679 -87837899 + AluSq SINE Alu 1 298 -15 372 279 87 78 chr3 139686679 139686812 -87837766 - L1ME4a LINE L1 -530 5591 5461 712 340 161 18 chr3 139686827 139687218 -87837360 - L3 LINE CR1 -756 821 375 319 300 108 0 chr3 139687324 139687454 -87837124 - HAL1 LINE L1 -2180 327 184 1100 169 12 0 chr3 139687498 139687670 -87836908 + FAM SINE Alu 1 174 -1 404 190 30 71 chr3 139687706 139687786 -87836792 - MER69 DNA AcHobo 0 2526 2444 2269 79 52 0 chr3 139687786 139688077 -87836501 + AluSx SINE Alu 3 308 -4 404 190 30 71 chr3 139688077 139688094 -87836484 - MER69 DNA AcHobo -82 2444 2428 258 32 0 0 chr3 139688094 139688125 -87836453 + (CA)n Simple_repeat Simple_repeat 2 32 0 1248 194 9 107 chr3 139688131 139688450 -87836128 + AluY SINE Alu 1 288 -23 404 190 30 71 chr3 139688450 139688589 -87835989 - MER69 DNA AcHobo -103 2423 2312 497 289 124 25 chr3 139688612 139688854 -87835724 + L2 LINE L2 3032 3297 -16 514 235 134 20 chr3 139689056 139689303 -87835275 + L1ME4a LINE L1 5836 6110 -11 2289 100 0 3 chr3 139689701 139690002 -87834576 - AluY SINE Alu -11 300 1 442 286 80 57 chr3 139690993 139691555 -87833023 + L1ME4a LINE L1 5348 5922 -199 398 19 0 19 chr3 139691812 139691864 -87832714 + (TTTTA)n Simple_repeat Simple_repeat 4 54 0 1757 157 3 17 chr3 139691866 139692160 -87832418 - AluJb SINE Alu -22 290 1 25 0 0 0 chr3 139692348 139692373 -87832205 + AT_rich Low_complexity Low_complexity 1 25 0 349 176 22 11 chr3 139692381 139692472 -87832106 + L1MB8 LINE L1 5091 5182 -964 2719 151 60 101 chr3 139692481 139692882 -87831696 + L1MB8 LINE L1 5446 5862 -316 2075 143 0 0 chr3 139692882 139693183 -87831395 - AluJb SINE Alu -11 301 1 2719 151 60 101 chr3 139693183 139693229 -87831349 + L1MB8 LINE L1 5862 5908 -270 4942 55 3 9 chr3 139693229 139693861 -87830717 + L1PA6 LINE L1 5524 6151 -3 2719 151 60 101 chr3 139693861 139694166 -87830412 + L1MB8 LINE L1 5908 6168 -10 548 244 96 68 chr3 139694307 139694557 -87830021 + MIR SINE MIR 1 257 -5 22 0 0 0 chr3 139696977 139696999 -87827579 + AT_rich Low_complexity Low_complexity 1 22 0 1826 229 35 14 chr3 139697384 139697896 -87826682 + L1MD3 LINE L1 7472 7994 -1 376 297 58 36 chr3 139697895 139698484 -87826094 - L1M4 LINE L1 -2615 3531 2930 * 973 99 17 22 chr3 139698528 139698709 -87825869 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 674 191 0 0 chr3 139698710 139698825 -87825753 - FLAM_C SINE Alu -28 115 1 22 0 0 0 chr3 139698874 139698896 -87825682 + AT_rich Low_complexity Low_complexity 1 22 0 182 313 12 84 chr3 139698943 139699026 -87825552 + L2 LINE L2 392 468 -2846 1728 116 104 15 chr3 139699451 139699559 -87825019 + AluSq SINE Alu 2 99 -210 2066 115 3 3 chr3 139699559 139699854 -87824724 + AluSc SINE Alu 1 295 -14 1728 116 104 15 chr3 139699854 139700030 -87824548 + AluSq SINE Alu 99 309 0 626 191 0 30 chr3 139700184 139700315 -87824263 - MLT2D LTR ERVL 0 414 288 530 123 25 0 chr3 139700315 139700396 -87824182 - MER1B DNA MER1_type 0 329 247 * 1231 130 85 0 chr3 139700392 139700592 -87823986 - MER1B DNA MER1_type -80 217 1 955 212 7 44 chr3 139700592 139700865 -87823713 - MLT2D LTR ERVL -128 286 24 2458 89 47 0 chr3 139700898 139701257 -87823321 - L1MA1 LINE L1 0 6302 5927 1293 165 106 33 chr3 139701259 139701532 -87823046 - AluJo SINE Alu -17 295 3 328 303 81 28 chr3 139701621 139701764 -87822814 + MIR SINE MIR 19 183 -79 1658 181 0 27 chr3 139701764 139702057 -87822521 - AluJo SINE Alu -24 288 4 328 303 81 28 chr3 139702057 139702136 -87822442 + MIR SINE MIR 183 256 -6 468 48 0 0 chr3 139702511 139702574 -87822004 + (TC)n Simple_repeat Simple_repeat 1 63 0 184 281 69 40 chr3 139703535 139703660 -87820918 + MIR SINE MIR 2 144 -64 999 257 66 40 chr3 139704075 139704530 -87820048 + L1MD1 LINE L1 4750 5216 -930 2786 151 60 50 chr3 139704624 139704696 -87819882 + L1MD1 LINE L1 5199 5269 -973 1748 164 85 3 chr3 139704696 139705014 -87819564 + MER2 DNA MER2_type 1 344 0 2786 151 60 50 chr3 139705014 139705075 -87819503 + L1MD1 LINE L1 5269 5328 -914 1992 115 3 62 chr3 139705075 139705396 -87819182 + AluSx SINE Alu 1 302 -10 2786 151 60 50 chr3 139705396 139705812 -87818766 + L1MD1 LINE L1 5328 5738 -504 1385 186 69 28 chr3 139705812 139706103 -87818475 + AluJo SINE Alu 1 303 -9 2786 151 60 50 chr3 139706103 139706229 -87818349 + L1MD1 LINE L1 5738 5885 -357 2143 80 40 0 chr3 139706229 139706504 -87818074 + AluSg SINE Alu 13 298 -12 2786 151 60 50 chr3 139706504 139706524 -87818054 + L1MD1 LINE L1 5885 5903 -339 1454 185 44 9 chr3 139706524 139706843 -87817735 + MLT1A2 LTR MaLR 34 363 -11 1746 152 55 9 chr3 139706850 139707179 -87817399 + L1MD1 LINE L1 5899 6242 0 1719 161 46 12 chr3 139707225 139707554 -87817024 - MER47A DNA MER2_type 0 366 27 296 224 207 0 chr3 139707577 139707693 -87816885 + L1MC4 LINE L1 7902 8041 -1 205 254 164 36 chr3 139708252 139708362 -87816216 + MIR SINE MIR 139 262 0 22 56 0 0 chr3 139708485 139708521 -87816057 + AT_rich Low_complexity Low_complexity 1 36 0 325 316 73 15 chr3 139708546 139708682 -87815896 + MIR SINE MIR 1 144 -118 2216 110 0 10 chr3 139708887 139709195 -87815383 + AluSg SINE Alu 1 305 -5 1968 150 0 7 chr3 139709221 139709514 -87815064 - AluJb SINE Alu -21 291 1 254 244 47 23 chr3 139709605 139709691 -87814887 + ERVL LTR ERVL 2049 2136 -3628 444 273 33 8 chr3 139709844 139709965 -87814613 + ERVL LTR ERVL 2331 2454 -3310 654 246 0 14 chr3 139710189 139710327 -87814251 + MER58A DNA MER1_type 1 136 0 308 303 27 57 chr3 139710414 139710547 -87814031 - L1MCa LINE L1 -874 1913 1778 201 74 0 0 chr3 139710547 139710574 -87814004 + (TG)n Simple_repeat Simple_repeat 2 28 0 308 303 27 57 chr3 139710574 139710652 -87813926 - L1MCa LINE L1 -1009 1778 1464 9149 196 59 69 chr3 139711169 139712194 -87812384 - L1MB7 LINE L1 -19 6663 5630 624 227 0 0 chr3 139712194 139712313 -87812265 + FLAM_A SINE Alu 4 122 -11 9149 196 59 69 chr3 139712313 139712345 -87812233 - L1MB7 LINE L1 -1052 5630 5599 2148 114 7 0 chr3 139712345 139712642 -87811936 - AluJb SINE Alu -13 299 1 9149 196 59 69 chr3 139712642 139713910 -87810668 - L1MB7 LINE L1 -1083 5599 4321 1907 162 55 0 chr3 139713910 139714238 -87810340 - MER7A DNA MER2_type -2 344 1 1899 148 17 7 chr3 139714241 139714532 -87810046 - AluJo SINE Alu -18 294 1 9149 196 59 69 chr3 139714532 139714690 -87809888 - L1MB7 LINE L1 -2363 4319 4161 846 164 0 0 chr3 139714690 139714818 -87809760 - FLAM_C SINE Alu -15 128 1 9149 196 59 69 chr3 139714818 139715123 -87809455 - L1MB7 LINE L1 -2521 4161 3855 1923 162 3 7 chr3 139715123 139715426 -87809152 - AluSx SINE Alu -10 302 1 9149 196 59 69 chr3 139715426 139717073 -87807505 - L1MB7 LINE L1 -2827 3855 2163 637 215 69 7 chr3 139717238 139717382 -87807196 - FRAM SINE Alu -23 153 1 338 282 43 34 chr3 139717385 139717502 -87807076 - L1MB7 LINE L1 -4544 2102 1985 2310 84 0 0 chr3 139717506 139717791 -87806787 - AluSg SINE Alu -14 296 12 757 252 12 49 chr3 139717803 139718090 -87806488 - L1MB7 LINE L1 -4644 2002 1693 305 133 133 0 chr3 139718066 139718126 -87806452 - L1PA13 LINE L1 -2 6659 6592 * 1399 221 82 6 chr3 139718123 139718641 -87805937 - L1MB7 LINE L1 -4832 1710 1215 352 290 161 19 chr3 139718962 139719124 -87805454 - L1ME3A LINE L1 -296 5874 5690 1124 98 0 0 chr3 139719184 139719327 -87805251 - AluSg/x SINE Alu -45 267 125 2127 143 3 0 chr3 139719334 139719627 -87804951 - AluSx SINE Alu -18 294 1 705 244 105 22 chr3 139719636 139720045 -87804533 - L1MEc LINE L1 -5039 1357 915 198 118 0 0 chr3 139720087 139720121 -87804457 + (A)n Simple_repeat Simple_repeat 1 34 0 774 252 69 11 chr3 139720145 139720419 -87804159 - L1MEc LINE L1 -5482 914 625 322 327 65 9 chr3 139720731 139720948 -87803630 - L1MEc LINE L1 -6122 274 46 1715 135 44 47 chr3 139721050 139721347 -87803231 - AluJb SINE Alu -2 310 15 858 209 161 56 chr3 139721360 139721694 -87802884 - L1ME3A LINE L1 -60 6110 5720 2132 125 3 13 chr3 139721694 139722007 -87802571 - AluSx SINE Alu -2 310 1 858 209 161 56 chr3 139722007 139722102 -87802476 - L1ME3A LINE L1 -450 5720 5636 1079 337 111 37 chr3 139722104 139723063 -87801515 + L2 LINE L2 2236 3272 0 288 0 0 0 chr3 139724657 139724689 -87799889 + (T)n Simple_repeat Simple_repeat 1 32 0 574 297 86 2 chr3 139724797 139724995 -87799583 + MIR SINE MIR 39 249 -13 * 763 210 17 77 chr3 139724992 139725225 -87799353 - MIR SINE MIR 0 262 44 351 236 234 9 chr3 139725276 139725403 -87799175 + MIR SINE MIR 2 147 -61 335 179 126 0 chr3 139725879 139725974 -87798604 - MER113 DNA MER1_type? -408 113 7 1913 115 45 0 chr3 139727010 139727315 -87797263 + AluSx SINE Alu 1 317 0 251 353 0 0 chr3 139727455 139727523 -87797055 + L2 LINE L2 3204 3271 -1 1155 196 157 4 chr3 139727714 139727969 -87796609 - AluJo SINE Alu -14 298 5 1972 157 7 0 chr3 139728409 139728702 -87795876 + AluSx SINE Alu 1 295 -17 21 0 0 0 chr3 139728925 139728946 -87795632 + AT_rich Low_complexity Low_complexity 1 21 0 470 259 30 30 chr3 139729207 139729338 -87795240 + MER5A DNA MER1_type 59 189 0 818 298 82 11 chr3 139729532 139730095 -87794483 - L1ME4a LINE L1 -1 6120 5518 285 128 0 0 chr3 139730128 139730175 -87794403 + Alu SINE Alu 1 47 -253 1730 128 4 39 chr3 139730341 139730622 -87793956 - AluSp SINE Alu -42 271 1 593 220 33 60 chr3 139730622 139730804 -87793774 - L1M4b LINE L1 -5446 1413 1237 324 293 138 0 chr3 139730819 139730942 -87793636 + L3 LINE CR1 1063 1202 -375 1813 106 4 0 chr3 139730942 139731179 -87793399 - AluSg1 SINE Alu -14 295 58 1653 75 0 0 chr3 139731289 139731503 -87793075 - L1PA7 LINE L1 -2 6152 5939 305 299 127 19 chr3 139731698 139731855 -87792723 + L3 LINE CR1 1372 1545 -32 6344 124 16 20 chr3 139732011 139733353 -87791225 + L1MA3 LINE L1 4972 6302 -3 27 0 0 0 chr3 139733354 139733381 -87791197 + AT_rich Low_complexity Low_complexity 1 27 0 1869 145 17 7 chr3 139734104 139734394 -87790184 - AluJo SINE Alu -19 293 1 1116 205 42 5 chr3 139734650 139734865 -87789713 + MER58A DNA MER1_type 1 223 -1 1790 256 55 55 chr3 139735891 139736410 -87788168 + L1MC4 LINE L1 7076 7597 -445 2199 100 10 3 chr3 139736410 139736701 -87787877 + AluSx SINE Alu 1 293 -19 1790 256 55 55 chr3 139736701 139737146 -87787432 + L1MC4 LINE L1 7596 8040 -2 2453 98 0 0 chr3 139737411 139737717 -87786861 - AluSx SINE Alu -6 306 1 272 89 0 22 chr3 139737993 139738038 -87786540 + (TA)n Simple_repeat Simple_repeat 2 45 0 408 227 232 16 chr3 139738208 139738402 -87786176 - MER112 DNA MER1_type -6 254 19 239 235 0 0 chr3 139739248 139739299 -87785279 - MIR SINE MIR -14 248 198 857 153 15 0 chr3 139739305 139739442 -87785136 + FRAM SINE Alu 25 163 -13 21 0 0 0 chr3 139739931 139739952 -87784626 + AT_rich Low_complexity Low_complexity 1 21 0 862 213 127 6 chr3 139741207 139741521 -87783057 - L1ME4a LINE L1 0 6121 5770 2230 108 0 16 chr3 139741592 139741906 -87782672 - AluY SINE Alu -2 309 1 2133 116 0 7 chr3 139741908 139742200 -87782378 - AluSx SINE Alu -22 290 1 235 290 14 0 chr3 139742313 139742382 -87782196 + MIR SINE MIR 174 243 -19 330 324 68 113 chr3 139742474 139742557 -87782021 - L2 LINE L2 -2 3270 3185 2494 71 3 0 chr3 139742557 139742867 -87781711 + AluY SINE Alu 1 311 0 330 324 68 113 chr3 139742867 139743153 -87781425 - L2 LINE L2 -87 3185 2918 * 431 322 101 22 chr3 139743129 139743396 -87781182 - L2 LINE L2 -822 2492 2205 460 262 86 27 chr3 139743442 139743784 -87780794 + L1MC4 LINE L1 7574 8039 -3 363 271 84 54 chr3 139743823 139743989 -87780589 + L1MC4a LINE L1 5791 5961 -1847 228 163 0 0 chr3 139744115 139744158 -87780420 + (TG)n Simple_repeat Simple_repeat 2 44 0 219 114 0 0 chr3 139744317 139744352 -87780226 + (CAAAA)n Simple_repeat Simple_repeat 3 37 0 1491 164 0 0 chr3 139744608 139744887 -87779691 + L1PA7 LINE L1 5886 6164 0 762 169 8 15 chr3 139745290 139745420 -87779158 + FLAM_C SINE Alu 1 129 -4 258 252 16 24 chr3 139745582 139745709 -87778869 + T-rich Low_complexity Low_complexity 5 130 0 2369 107 0 3 chr3 139745869 139746179 -87778399 - AluSg SINE Alu -1 309 1 394 283 78 52 chr3 139746290 139746481 -87778097 - MIR3 SINE MIR 0 208 13 1845 119 21 7 chr3 139747452 139747728 -87776850 + AluSx SINE Alu 5 287 -25 192 77 0 0 chr3 139747728 139747754 -87776824 + (TA)n Simple_repeat Simple_repeat 2 27 0 2350 214 144 22 chr3 139747769 139748447 -87776131 + MER21B LTR ERV1 43 803 -60 3197 208 42 41 chr3 139748515 139749497 -87775081 - L1M4 LINE L1 -1477 4669 3687 181 335 159 38 chr3 139750855 139751094 -87773484 + L2 LINE L2 3004 3271 -1 1452 172 115 18 chr3 139751579 139751858 -87772720 - AluJo SINE Alu -6 306 1 455 257 111 119 chr3 139753886 139754139 -87770439 - MIR SINE MIR -7 255 5 208 254 55 28 chr3 139754459 139754535 -87770043 + MIR SINE MIR 73 149 -63 * 249 330 11 11 chr3 139754528 139754619 -87769959 - MIR SINE MIR -152 110 20 21 0 0 0 chr3 139755299 139755320 -87769258 + AT_rich Low_complexity Low_complexity 1 21 0 1152 71 35 0 chr3 139755340 139755509 -87769069 - L1MA1 LINE L1 -362 5940 5766 369 0 0 0 chr3 139756226 139756267 -87768311 + (TG)n Simple_repeat Simple_repeat 2 42 0 2053 200 77 11 chr3 139756468 139757028 -87767550 + L1ME2 LINE L1 5469 6065 -99 1883 184 11 3 chr3 139757030 139757395 -87767183 + MER74A LTR ERVL 3 370 -188 2241 24 0 0 chr3 139757397 139757754 -87766824 + L1P1 LINE L1 5110 5466 -689 1668 53 5 0 chr3 139757763 139757972 -87766606 + L1PA3 LINE L1 5945 6154 -1 719 167 189 11 chr3 139757975 139758155 -87766423 + MER74A LTR ERVL 346 557 -1 798 165 8 8 chr3 139758417 139758550 -87766028 - FRAM SINE Alu -38 138 6 24 0 0 0 chr3 139758787 139758811 -87765767 + AT_rich Low_complexity Low_complexity 1 24 0 538 297 59 39 chr3 139758855 139759595 -87764983 - L1MC5 LINE L1 -284 7677 7094 291 336 68 20 chr3 139760036 139760182 -87764396 + L2 LINE L2 2698 2850 -464 1355 184 82 82 chr3 139760426 139760791 -87763787 - MLT1A1 LTR MaLR 0 365 1 306 276 236 0 chr3 139760791 139760918 -87763660 + L2 LINE L2 3115 3271 -1 24 0 0 0 chr3 139761306 139761330 -87763248 + GC_rich Low_complexity Low_complexity 1 24 0 625 137 92 13 chr3 139761566 139761719 -87762859 - Charlie5 DNA MER1_type -27 2585 2421 1282 232 17 6 chr3 139761774 139762123 -87762455 - L1MC4 LINE L1 -251 7791 7439 411 330 63 10 chr3 139762123 139762329 -87762249 + LTR16A LTR ERVL 1 217 -233 2077 101 10 42 chr3 139762416 139762724 -87761854 - AluSx SINE Alu -14 298 1 427 213 47 27 chr3 139762726 139762876 -87761702 - L1MEc LINE L1 -4345 2051 1899 599 262 49 67 chr3 139762933 139763062 -87761516 - L1MEc LINE L1 -4501 1895 1765 2194 79 0 0 chr3 139763062 139763339 -87761239 - AluY SINE Alu 0 311 35 599 262 49 67 chr3 139763339 139763467 -87761111 - L1MEc LINE L1 -4631 1765 1643 1731 185 3 31 chr3 139763467 139763786 -87760792 - AluJb SINE Alu -2 310 1 599 262 49 67 chr3 139763786 139763871 -87760707 - L1MEc LINE L1 -4753 1643 1558 3355 195 74 10 chr3 139763993 139765682 -87758896 - L1MDa LINE L1 -2952 3588 1791 2516 203 54 34 chr3 139765707 139766334 -87758244 - L1MDa LINE L1 -5900 640 1 563 235 139 73 chr3 139766328 139766881 -87757697 - L1MC4 LINE L1 -92 7716 7205 * 333 0 0 0 chr3 139766929 139766966 -87757612 + (TG)n Simple_repeat Simple_repeat 2 38 0 2141 194 153 34 chr3 139766977 139767375 -87757203 + L1MC4a LINE L1 7018 7367 -441 2584 65 0 0 chr3 139767375 139767681 -87756897 - AluY SINE Alu -5 306 1 2141 194 153 34 chr3 139767681 139767989 -87756589 + L1MC4a LINE L1 7367 7808 0 620 233 82 65 chr3 139768283 139768515 -87756063 - L2 LINE L2 -1 3312 3077 513 299 129 4 chr3 139768514 139768755 -87755823 + L2 LINE L2 3039 3309 -4 * 194 348 78 43 chr3 139769587 139769702 -87754876 + MIR SINE MIR 24 142 -66 2116 121 4 0 chr3 139770056 139770360 -87754218 + AluSq SINE Alu 1 305 0 465 275 127 47 chr3 139770394 139770819 -87753759 + L1MC4a LINE L1 5496 5954 -1854 2452 78 0 0 chr3 139770941 139771236 -87753342 + AluSg SINE Alu 1 295 -15 1073 125 78 42 chr3 139771402 139771594 -87752984 - AluSq SINE Alu -16 297 99 213 228 228 0 chr3 139771880 139771959 -87752619 - MIR SINE MIR -4 258 162 290 240 272 44 chr3 139771962 139772400 -87752178 - MLT1K LTR MaLR -2 586 18 346 280 16 64 chr3 139772405 139772530 -87752048 - MIR SINE MIR -99 163 45 21 71 0 0 chr3 139773308 139773350 -87751228 + AT_rich Low_complexity Low_complexity 1 42 0 1735 187 7 7 chr3 139773647 139773946 -87750632 - AluJo SINE Alu -13 299 1 2325 55 0 52 chr3 139774021 139774330 -87750248 - AluY SINE Alu -18 293 1 1785 156 11 7 chr3 139774956 139775231 -87749347 + AluJb SINE Alu 14 289 -23 267 259 52 60 chr3 139775807 139775923 -87748655 + L2 LINE L2 2934 3048 -224 1742 301 102 18 chr3 139776044 139776900 -87747678 + L2 LINE L2 2181 3102 -211 1635 105 0 0 chr3 139777609 139777819 -87746759 + AluSg SINE Alu 1 210 -100 275 164 0 18 chr3 139777819 139777874 -87746704 + FLAM_A SINE Alu 77 130 -3 1759 157 18 11 chr3 139778137 139778418 -87746160 - AluJo SINE Alu -16 296 14 724 131 9 0 chr3 139778616 139778723 -87745855 - AluSg/x SINE Alu -13 299 192 29 28 0 0 chr3 139779747 139779783 -87744795 + AT_rich Low_complexity Low_complexity 1 36 0 210 139 0 0 chr3 139780649 139780685 -87743893 + (TG)n Simple_repeat Simple_repeat 2 37 0 688 311 98 52 chr3 139781023 139781464 -87743114 - L2 LINE L2 -18 3295 2835 611 274 119 0 chr3 139781635 139781854 -87742724 + MIR SINE MIR 4 248 -14 455 291 86 12 chr3 139782364 139782691 -87741887 - L1ME4a LINE L1 -21 6100 5750 1367 165 8 4 chr3 139884415 139884651 -87639927 - AluJo SINE Alu -38 274 38 21 36 0 0 chr3 139884688 139884716 -87639862 + AT_rich Low_complexity Low_complexity 1 28 0 272 182 231 74 chr3 139884716 139884837 -87639741 - MIR SINE MIR -65 197 58 363 287 0 0 chr3 139885334 139885456 -87639122 - MER103 DNA DNA -43 123 2 405 351 107 0 chr3 139886208 139886351 -87638227 - MIR SINE MIR -63 145 23 647 181 55 16 chr3 139886443 139886570 -87638008 - AluJb SINE Alu -179 133 2 422 305 49 1 chr3 139887224 139887366 -87637212 - MIR SINE MIR -65 143 35 491 71 14 0 chr3 139887603 139887673 -87636905 - MADE1 DNA Mariner 0 80 10 293 130 0 0 chr3 139887677 139887723 -87636855 - MADE1 DNA Mariner 0 80 35 216 0 0 0 chr3 139887775 139887799 -87636779 + (CA)n Simple_repeat Simple_repeat 2 25 0 1890 75 0 16 chr3 139888812 139889090 -87635488 + AluY SINE Alu 36 309 0 315 279 142 58 chr3 139889190 139889286 -87635292 - MIR SINE MIR 0 262 175 879 171 80 6 chr3 139889286 139889462 -87635116 - MER5A DNA MER1_type 0 189 1 315 279 142 58 chr3 139889462 139889555 -87635023 - MIR SINE MIR -87 175 57 1857 104 8 0 chr3 139889588 139889839 -87634739 - AluSq SINE Alu -20 293 41 523 77 0 0 chr3 139889839 139889904 -87634674 + THE1A LTR MaLR 291 355 0 402 91 0 0 chr3 139889934 139889989 -87634589 - MSTB1 LTR MaLR -6 426 372 1216 165 12 16 chr3 139890089 139890331 -87634247 - AluSq SINE Alu -72 241 1 406 21 0 0 chr3 139890335 139890382 -87634196 - AluSq/x SINE Alu -180 133 87 2012 114 0 20 chr3 139890446 139890743 -87633835 - AluJb SINE Alu -14 298 8 1973 103 31 10 chr3 139890785 139891077 -87633501 - AluSq SINE Alu -15 298 1 1179 113 5 31 chr3 139891108 139891303 -87633275 - AluSg/x SINE Alu -18 294 105 492 18 0 0 chr3 139891686 139891743 -87632835 + (TA)n Simple_repeat Simple_repeat 1 57 0 1891 118 4 7 chr3 139891780 139892151 -87632427 - AluSc SINE Alu 0 370 1 1964 132 0 7 chr3 139892151 139892454 -87632124 - AluSx SINE Alu -11 301 1 923 59 0 0 chr3 139892486 139892605 -87631973 + SVA Other Other 213 331 -1055 1401 141 114 4 chr3 139893176 139893439 -87631139 + AluJo SINE Alu 1 292 -20 1802 93 128 0 chr3 139893452 139893709 -87630869 - AluSx SINE Alu -12 290 1 760 231 57 31 chr3 139893711 139893940 -87630638 - L1MB3 LINE L1 -130 6053 5819 954 113 0 44 chr3 139893940 139894100 -87630478 - AluSg/x SINE Alu -26 284 132 2210 89 0 0 chr3 139894290 139894583 -87629995 - AluY SINE Alu -18 293 1 1878 106 24 27 chr3 139894584 139894877 -87629701 - AluSx SINE Alu -20 292 1 915 214 28 23 chr3 139895031 139895246 -87629332 - MER20 DNA MER1_type -3 216 1 350 277 50 0 chr3 139895352 139895453 -87629125 + MIR SINE MIR 43 148 -114 831 195 0 0 chr3 139895666 139895820 -87628758 - AluJo SINE Alu -41 271 118 25 31 0 0 chr3 139895836 139895868 -87628710 + AT_rich Low_complexity Low_complexity 1 32 0 2192 110 0 0 chr3 139895873 139896174 -87628404 - AluSq SINE Alu -2 311 11 1188 57 0 0 chr3 139896177 139896318 -87628260 - AluSq/x SINE Alu -172 141 1 31 0 0 0 chr3 139896365 139896396 -87628182 + AT_rich Low_complexity Low_complexity 1 31 0 831 195 20 7 chr3 139896458 139896607 -87627971 - AluJb SINE Alu -28 284 134 1015 115 14 0 chr3 139896607 139896755 -87627823 - AluSp/q SINE Alu -8 305 156 1202 125 0 0 chr3 139897022 139897198 -87627380 - AluSx SINE Alu 0 312 137 2311 80 0 3 chr3 139897198 139897497 -87627081 - AluSx SINE Alu -14 298 1 21 0 0 0 chr3 139897499 139897520 -87627058 + AT_rich Low_complexity Low_complexity 1 21 0 875 145 0 0 chr3 139897651 139897782 -87626796 - AluSx SINE Alu -180 133 3 1788 151 20 0 chr3 139897783 139897951 -87626627 - AluJo SINE Alu -14 298 120 198 0 0 0 chr3 139897951 139897973 -87626605 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1788 151 20 0 chr3 139897973 139898096 -87626482 - AluJo SINE Alu -192 120 1 1733 53 0 22 chr3 139898214 139898442 -87626136 + AluY SINE Alu 82 304 -7 2166 101 16 3 chr3 139899029 139899336 -87625242 - AluSx SINE Alu -1 311 1 1436 47 0 0 chr3 139899481 139899651 -87624927 - AluY SINE Alu -141 170 1 733 154 15 44 chr3 139899651 139899787 -87624791 - AluJo/FLAM SINE Alu -170 132 1 200 216 59 0 chr3 139900404 139900455 -87624123 + (CACCC)n Simple_repeat Simple_repeat 3 56 0 232 217 33 0 chr3 139901335 139901395 -87623183 - LTR16C LTR ERVL -7 484 423 438 323 56 50 chr3 139901529 139901832 -87622746 + L2 LINE L2 2882 3186 -86 2331 92 0 0 chr3 139902088 139902394 -87622184 + AluY SINE Alu 1 306 -5 29 28 0 0 chr3 139902514 139902550 -87622028 + AT_rich Low_complexity Low_complexity 1 36 0 1803 180 7 0 chr3 139902550 139902856 -87621722 + AluJb SINE Alu 1 308 -4 1235 182 0 22 chr3 139902950 139903175 -87621403 + AluJo SINE Alu 1 220 -92 1883 138 10 0 chr3 139903304 139903594 -87620984 + AluSp SINE Alu 19 311 -2 775 229 51 37 chr3 139903598 139903812 -87620766 + MER20 DNA MER1_type 2 218 -1 189 0 0 0 chr3 139903887 139903908 -87620670 + (A)n Simple_repeat Simple_repeat 1 21 0 2243 107 3 0 chr3 139904240 139904549 -87620029 - AluSg SINE Alu 0 310 1 2173 134 0 3 chr3 139904570 139904883 -87619695 - AluSx SINE Alu 0 312 1 2212 114 0 0 chr3 139905226 139905524 -87619054 - AluSx SINE Alu -14 298 1 2074 113 0 26 chr3 139906093 139906403 -87618175 + AluSx SINE Alu 1 302 -10 2208 92 26 0 chr3 139906444 139906774 -87617804 - AluSx SINE Alu 0 338 1 699 215 23 0 chr3 139906776 139906906 -87617672 - AluJo/FLAM SINE Alu -169 133 1 596 274 38 9 chr3 139907496 139907708 -87616870 - MLT1K LTR MaLR -295 293 76 985 128 20 0 chr3 139908089 139908237 -87616341 - AluSq/x SINE Alu -162 151 1 630 231 94 30 chr3 139908238 139908441 -87616137 - L1MA10 LINE L1 -56 6278 6063 2220 100 3 0 chr3 139909381 139909691 -87614887 - AluSx SINE Alu -1 311 1 22 35 0 0 chr3 139910540 139910569 -87614009 + GC_rich Low_complexity Low_complexity 1 29 0 252 346 28 0 chr3 139911239 139911346 -87613232 + MER3 DNA MER1_type 1 110 -99 1579 156 109 0 chr3 139911365 139911640 -87612938 - AluJo SINE Alu -7 305 1 360 300 83 22 chr3 139911684 139911714 -87612864 + L2 LINE L2 3123 3150 -163 2337 100 0 6 chr3 139911714 139912025 -87612553 - AluSx SINE Alu -3 309 1 360 300 83 22 chr3 139912025 139912174 -87612404 + L2 LINE L2 3150 3313 0 788 243 92 0 chr3 139912287 139912538 -87612040 - MER58 DNA MER1_type -2146 274 1 27 29 0 0 chr3 139912544 139912578 -87612000 + AT_rich Low_complexity Low_complexity 1 34 0 2044 109 11 0 chr3 139912578 139912862 -87611716 - AluSx SINE Alu -25 287 1 243 241 17 0 chr3 139912908 139912966 -87611612 - FLAM_A SINE Alu -72 60 2 1618 110 27 104 chr3 139912969 139913297 -87611281 - AluYb8 SINE Alu -15 303 1 1137 105 0 47 chr3 139913723 139913894 -87610684 + AluSg/x SINE Alu 136 298 -12 856 226 0 0 chr3 139915869 139916028 -87608550 + FRAM SINE Alu 1 156 -20 2036 104 10 20 chr3 139916050 139916347 -87608231 + AluSc SINE Alu 1 294 -15 540 255 35 0 chr3 139916350 139916495 -87608083 - L1MB3 LINE L1 -20 6163 6014 335 237 43 21 chr3 139916502 139916595 -87607983 + L1MC4 LINE L1 6610 6704 -1338 1960 123 3 26 chr3 139917024 139917334 -87607244 - AluJb SINE Alu -9 303 1 261 192 39 0 chr3 139922098 139922150 -87602428 - MIR3 SINE MIR -38 170 117 30 45 0 0 chr3 139922350 139922394 -87602184 + GC_rich Low_complexity Low_complexity 1 44 0 189 0 0 0 chr3 139922505 139922526 -87602052 + (CGGGGG)n Simple_repeat Simple_repeat 2 22 0 690 117 19 0 chr3 139922767 139922870 -87601708 + AluSq/x SINE Alu 4 108 -205 949 148 43 0 chr3 139922972 139923134 -87601444 - AluJ SINE Alu 0 312 144 319 145 325 0 chr3 139923136 139923219 -87601359 - AluJ SINE Alu -191 111 2 351 0 0 0 chr3 139923510 139923549 -87601029 + (TG)n Simple_repeat Simple_repeat 2 40 0 25 0 0 0 chr3 139926711 139926736 -87597842 + GC_rich Low_complexity Low_complexity 1 25 0 432 248 60 8 chr3 139929692 139929809 -87594769 - MER20 DNA MER1_type -68 151 29 195 370 59 8 chr3 139930102 139930221 -87594357 - MIR3 SINE MIR -54 154 30 538 100 0 11 chr3 139932066 139932156 -87592422 + AluS SINE Alu 1 89 -224 369 0 0 0 chr3 139932401 139932442 -87592136 + (TG)n Simple_repeat Simple_repeat 2 42 0 1030 162 0 12 chr3 139932444 139932617 -87591961 - AluSg/x SINE Alu -31 279 109 1746 183 0 0 chr3 139934457 139934746 -87589832 - AluJo SINE Alu -14 298 10 2764 81 11 0 chr3 139934807 139935165 -87589413 - L1PA8 LINE L1 -13 6159 5798 186 260 201 19 chr3 139935793 139935947 -87588631 + MIR3 SINE MIR 9 190 -18 190 319 0 0 chr3 139935997 139936044 -87588534 - L2 LINE L2 -3 3310 3264 1515 194 3 25 chr3 139936803 139937122 -87587456 - AluJo SINE Alu 0 312 1 2209 106 6 0 chr3 139937138 139937449 -87587129 - AluSq SINE Alu 0 313 1 1916 124 28 3 chr3 139937556 139937838 -87586740 - AluJb SINE Alu -17 295 7 207 325 26 0 chr3 139938530 139938607 -87585971 - MIR3 SINE MIR -52 156 78 2366 47 0 27 chr3 139938615 139938916 -87585662 - AluY SINE Alu -18 293 1 2183 105 0 0 chr3 139938916 139939211 -87585367 - AluSg SINE Alu -15 295 1 1706 85 135 0 chr3 139940047 139940307 -87584271 + AluSp SINE Alu 1 295 -18 802 215 0 7 chr3 139940307 139940456 -87584122 - AluJb SINE Alu -34 278 131 1217 49 0 0 chr3 139940472 139940616 -87583962 + AluY SINE Alu 1 144 -167 2342 84 3 0 chr3 139940616 139940924 -87583654 + AluSx SINE Alu 1 309 -3 1087 194 14 5 chr3 139940963 139941174 -87583404 - AluJo SINE Alu -94 218 6 671 151 28 0 chr3 139941176 139941282 -87583296 - AluJo SINE Alu -174 138 30 253 280 11 75 chr3 139941409 139941502 -87583076 + L2 LINE L2 3226 3312 -1 189 161 0 0 chr3 139941739 139941770 -87582808 + MIR SINE MIR 221 251 -11 183 214 24 0 chr3 139941770 139941781 -87582797 + L2 LINE L2 3266 3308 -5 859 162 54 73 chr3 139942183 139942387 -87582191 - AluJb SINE Alu -21 291 92 203 152 0 0 chr3 139942528 139942561 -87582017 + L2 LINE L2 3271 3303 -10 189 326 23 0 chr3 139942542 139942637 -87581941 - MIR SINE MIR -71 137 83 * 202 187 0 80 chr3 139943321 139943396 -87581182 + G-rich Low_complexity Low_complexity 4 72 0 2018 115 13 0 chr3 139943678 139943983 -87580595 - AluSx SINE Alu -3 309 1 828 153 8 0 chr3 139943984 139944115 -87580463 - AluJo SINE Alu -176 136 5 626 262 98 6 chr3 139945920 139946084 -87578494 - AluJo SINE Alu -11 301 123 1773 115 84 25 chr3 139946097 139946383 -87578195 + AluSq SINE Alu 1 303 -10 818 207 73 69 chr3 139946920 139947195 -87577383 + LTR2 LTR ERV1 41 316 -133 25 31 0 0 chr3 139947295 139947327 -87577251 + GC_rich Low_complexity Low_complexity 1 32 0 2119 111 7 0 chr3 139947737 139948043 -87576535 - AluSx SINE Alu -4 308 1 341 289 0 21 chr3 139948736 139948833 -87575745 - MIR3 SINE MIR -52 156 62 1961 126 18 0 chr3 139948969 139949255 -87575323 + AluSx SINE Alu 1 291 -21 485 241 62 2 chr3 139949351 139949516 -87575062 - MIR SINE MIR -62 146 5 553 67 0 48 chr3 139950734 139950839 -87573739 + (TTCC)n Simple_repeat Simple_repeat 1 100 0 183 279 82 0 chr3 139951018 139951079 -87573499 - MIR3 SINE MIR -43 165 100 2142 106 0 31 chr3 139951166 139951488 -87573090 - AluSx SINE Alu 0 312 1 211 301 55 0 chr3 139951525 139951598 -87572980 + L2 LINE L2 3235 3311 -2 252 0 0 0 chr3 139951643 139951671 -87572907 + (TGAA)n Simple_repeat Simple_repeat 3 30 0 240 282 128 0 chr3 139951708 139951786 -87572792 + MIR SINE MIR 36 123 -85 241 310 38 19 chr3 139952024 139952182 -87572396 + C-rich Low_complexity Low_complexity 1 161 0 217 296 11 45 chr3 139952660 139952748 -87571830 - MIR SINE MIR 0 262 178 414 0 0 0 chr3 139953271 139953317 -87571261 + (TG)n Simple_repeat Simple_repeat 2 47 0 202 189 0 0 chr3 139953372 139953409 -87571169 - L2 LINE L2 -19 3294 3258 870 153 0 0 chr3 139954455 139954579 -87569999 + FLAM_C SINE Alu 1 124 -9 2078 99 0 40 chr3 139954599 139954901 -87569677 + AluSx SINE Alu 1 290 -22 22 56 0 0 chr3 139955858 139955894 -87568684 + GC_rich Low_complexity Low_complexity 1 36 0 2407 53 0 10 chr3 139957592 139957896 -87566682 + AluY SINE Alu 1 301 -10 2266 115 0 0 chr3 139958146 139958451 -87566127 + AluSx SINE Alu 1 305 -7 26 0 0 0 chr3 139961627 139961653 -87562925 + GC_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr3 139961739 139961764 -87562814 + GC_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3 139962011 139962034 -87562544 + GC_rich Low_complexity Low_complexity 1 23 0 246 147 0 53 chr3 139962068 139962143 -87562435 + (CCGGG)n Simple_repeat Simple_repeat 5 75 0 26 30 0 0 chr3 139962185 139962218 -87562360 + GC_rich Low_complexity Low_complexity 1 33 0 38 51 0 0 chr3 139962383 139962442 -87562136 + GC_rich Low_complexity Low_complexity 1 59 0 29 0 0 0 chr3 139964354 139964383 -87560195 + GC_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr3 139966609 139966634 -87557944 + AT_rich Low_complexity Low_complexity 1 25 0 2066 129 3 0 chr3 139966664 139966974 -87557604 + AluSx SINE Alu 1 311 -1 1353 91 0 67 chr3 139967109 139967172 -87557406 - AluSp SINE Alu -117 196 130 2080 98 17 3 chr3 139967172 139967468 -87557110 - AluY SINE Alu -11 300 1 1353 91 0 67 chr3 139967468 139967614 -87556964 - AluSp SINE Alu -183 130 1 2385 68 0 3 chr3 139967622 139967918 -87556660 - AluY SINE Alu -16 295 1 2388 88 3 0 chr3 139967925 139968232 -87556346 - AluSp SINE Alu -5 308 1 2442 65 0 0 chr3 139968727 139969034 -87555544 - AluY SINE Alu -4 307 1 1398 107 97 0 chr3 139969042 139969258 -87555320 - AluSx SINE Alu -20 292 56 874 192 0 0 chr3 139969917 139970063 -87554515 - FRAM SINE Alu -30 146 1 198 310 52 0 chr3 139970142 139970200 -87554378 - L2 LINE L2 0 3313 3253 25 65 0 0 chr3 139970558 139970604 -87553974 + GC_rich Low_complexity Low_complexity 1 46 0 1230 118 0 147 chr3 139972703 139972779 -87551799 + AluJo SINE Alu 81 167 -145 2572 41 0 13 chr3 139972779 139973093 -87551485 + AluY SINE Alu 1 310 -1 1230 118 0 147 chr3 139973093 139973288 -87551290 + AluJo SINE Alu 167 312 0 2006 109 0 45 chr3 139973406 139973717 -87550861 - AluSg SINE Alu -11 299 3 1901 128 0 73 chr3 139973731 139974060 -87550518 - AluY SINE Alu -6 305 1 2029 98 25 0 chr3 139976198 139976484 -87548094 + AluSx SINE Alu 1 293 -19 546 195 39 47 chr3 139976510 139976638 -87547940 + AluJb SINE Alu 153 279 -33 1473 164 94 0 chr3 139977783 139977800 -87546778 - AluJb SINE Alu -11 301 287 246 32 0 0 chr3 139977800 139977831 -87546747 + (TTGG)n Simple_repeat Simple_repeat 2 32 0 1473 164 94 0 chr3 139977831 139978088 -87546490 - AluJb SINE Alu -25 287 1 399 263 115 6 chr3 139978395 139978551 -87546027 - MLT1B LTR MaLR -32 535 363 2199 114 0 0 chr3 139978667 139978965 -87545613 + AluSx SINE Alu 1 298 -14 656 265 167 15 chr3 139979229 139979565 -87545013 + L1MC3 LINE L1 7370 7756 -29 2056 120 20 0 chr3 139979572 139979873 -87544705 + AluSx SINE Alu 1 307 -5 1731 89 170 12 chr3 139980234 139980493 -87544085 - AluSg SINE Alu 0 300 1 686 0 0 0 chr3 139980912 139980985 -87543593 - tRNA-Phe-TTC tRNA tRNA -3 73 1 689 0 0 0 chr3 139981113 139981188 -87543390 + tRNA-Asn-AAC tRNA tRNA 1 75 -2 1325 246 42 57 chr3 139981988 139982363 -87542215 - Charlie4a DNA MER1_type -1464 497 131 1555 172 41 14 chr3 139982363 139982654 -87541924 - AluJb SINE Alu -13 299 1 1325 246 42 57 chr3 139982654 139982783 -87541795 - Charlie4a DNA MER1_type -1830 131 1 2264 81 7 0 chr3 139982789 139983085 -87541493 + AluSp SINE Alu 7 304 -9 2142 94 3 7 chr3 139983087 139983384 -87541194 + AluSp SINE Alu 1 296 -17 1510 159 53 58 chr3 139983798 139984051 -87540527 - MLT1B LTR MaLR -26 364 112 2223 105 0 0 chr3 139984051 139984346 -87540232 - AluSx SINE Alu -15 297 3 1510 159 53 58 chr3 139984346 139984451 -87540127 - MLT1B LTR MaLR -278 112 8 193 324 48 19 chr3 139984948 139985053 -87539525 - L2 LINE L2 -244 3028 2921 215 241 12 0 chr3 139986538 139986621 -87537957 + (CA)n Simple_repeat Simple_repeat 1 84 0 266 319 11 11 chr3 139986624 139986718 -87537860 + (CACG)n Simple_repeat Simple_repeat 4 97 0 459 274 0 0 chr3 139986721 139986896 -87537682 + (CA)n Simple_repeat Simple_repeat 1 175 0 2353 49 29 19 chr3 139987443 139987751 -87536827 - AluY SINE Alu 0 311 1 291 270 0 50 chr3 139988139 139988239 -87536339 + Charlie5 DNA MER1_type 2472 2566 -46 2337 85 13 3 chr3 139989029 139989334 -87535244 - AluSx SINE Alu -4 308 1 1685 128 4 23 chr3 139989528 139989794 -87534784 - AluJo SINE Alu -38 274 14 248 167 18 10 chr3 139990518 139990573 -87534005 + MIR SINE MIR 113 165 -43 2459 57 7 0 chr3 139990595 139990894 -87533684 - AluY SINE Alu -7 304 4 974 125 0 0 chr3 139990896 139991032 -87533546 - AluSq/x SINE Alu -176 136 1 835 166 29 17 chr3 139991055 139991230 -87533348 - L1MB5 LINE L1 0 6174 5998 379 286 43 7 chr3 139991686 139991826 -87532752 + MIR SINE MIR 22 166 -96 182 337 157 0 chr3 139991943 139992026 -87532552 + L2 LINE L2 3163 3258 -14 2105 117 3 31 chr3 139992069 139992386 -87532192 + AluSx SINE Alu 1 308 -4 269 351 70 18 chr3 139992771 139992942 -87531636 + MIR SINE MIR 5 184 -78 22 56 0 0 chr3 139993746 139993782 -87530796 + GC_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr3 139993882 139993904 -87530674 + GC_rich Low_complexity Low_complexity 1 22 0 24 91 0 0 chr3 139993991 139994057 -87530521 + GC_rich Low_complexity Low_complexity 1 66 0 191 61 30 0 chr3 139994339 139994372 -87530206 + (TG)n Simple_repeat Simple_repeat 2 35 0 451 249 50 6 chr3 139994421 139994746 -87529832 + (TG)n Simple_repeat Simple_repeat 1 339 0 2067 133 0 0 chr3 139997036 139997336 -87527242 + AluJb SINE Alu 1 300 -12 578 187 11 50 chr3 139998176 139998429 -87526149 + (CCCA)n Simple_repeat Simple_repeat 1 243 0 7694 53 3 7 chr3 139999949 140000991 -87523587 + SVA Other Other 434 1380 -6 2147 120 3 0 chr3 140001103 140001403 -87523175 - AluSx SINE Alu -7 305 5 259 270 95 48 chr3 140001465 140001591 -87522987 + MIR3 SINE MIR 15 146 -62 258 258 0 0 chr3 140002649 140002738 -87521840 + (CA)n Simple_repeat Simple_repeat 1 89 0 212 197 0 16 chr3 140002850 140002911 -87521667 + (CA)n Simple_repeat Simple_repeat 1 60 0 2188 77 28 0 chr3 140004628 140004913 -87519665 + AluY SINE Alu 1 293 -18 781 197 39 116 chr3 140005083 140005316 -87519262 - MER20 DNA MER1_type 0 219 5 233 250 18 0 chr3 140005428 140005484 -87519094 + MIR SINE MIR 117 173 -89 1952 122 39 0 chr3 140005516 140005802 -87518776 - AluSx SINE Alu -11 301 5 259 270 95 48 chr3 140005864 140005990 -87518588 + MIR3 SINE MIR 15 146 -62 188 348 56 0 chr3 140006264 140006353 -87518225 - MIR SINE MIR -89 173 80 301 240 108 23 chr3 140009362 140009491 -87515087 + L2 LINE L2 2632 2771 -543 203 269 218 45 chr3 140009535 140009691 -87514887 + L2 LINE L2 2912 3094 -178 311 315 18 9 chr3 140009771 140009882 -87514696 - MIR3 SINE MIR -13 195 84 28 71 0 0 chr3 140010444 140010500 -87514078 + GC_rich Low_complexity Low_complexity 1 56 0 254 164 30 45 chr3 140010954 140011021 -87513557 + (TCTCTG)n Simple_repeat Simple_repeat 1 66 0 255 204 37 0 chr3 140011270 140011324 -87513254 + MIR SINE MIR 94 149 -59 2530 36 10 7 chr3 140011607 140011916 -87512662 - AluY SINE Alu -1 310 1 1749 112 4 0 chr3 140011916 140012166 -87512412 - AluSg SINE Alu -12 298 48 265 318 84 13 chr3 140012335 140012489 -87512089 + MIR3 SINE MIR 3 167 -41 220 319 44 11 chr3 140012563 140012654 -87511924 - MIR3 SINE MIR -29 179 86 23 0 0 0 chr3 140014039 140014062 -87510516 + GC_rich Low_complexity Low_complexity 1 23 0 23 54 0 0 chr3 140014203 140014240 -87510338 + GC_rich Low_complexity Low_complexity 1 37 0 283 237 237 0 chr3 140014810 140014903 -87509675 - L2 LINE L2 -3 3310 3196 207 0 0 0 chr3 140016896 140016919 -87507659 + (CCG)n Simple_repeat Simple_repeat 1 23 0 2126 132 0 0 chr3 140019504 140019808 -87504770 - AluSx SINE Alu -8 304 1 1725 148 0 40 chr3 140019817 140020152 -87504426 - AluJo SINE Alu 0 312 2 22 35 0 0 chr3 140022808 140022837 -87501741 + GC_rich Low_complexity Low_complexity 1 29 0 240 268 10 41 chr3 140023262 140023333 -87501245 - MIR SINE MIR -31 231 162 1001 76 0 15 chr3 140023333 140023464 -87501114 - FLAM_C SINE Alu -1 132 4 240 268 10 41 chr3 140023464 140023489 -87501089 - MIR SINE MIR -100 162 138 213 39 0 0 chr3 140023489 140023515 -87501063 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 256 38 208 0 chr3 140023518 140023571 -87501007 - MER41B LTR ERV1 -91 544 481 233 171 0 0 chr3 140023576 140023617 -87500961 - MIR SINE MIR -64 144 104 225 0 0 0 chr3 140023995 140024020 -87500558 + (CCTG)n Simple_repeat Simple_repeat 3 27 0 344 204 175 10 chr3 140024041 140024144 -87500434 - MIR SINE MIR -102 160 41 1974 107 0 63 chr3 140024412 140024730 -87499848 - AluSg SINE Alu -8 302 5 276 100 0 0 chr3 140025521 140025561 -87499017 + (TCCC)n Simple_repeat Simple_repeat 3 42 0 290 319 18 0 chr3 140026495 140026608 -87497970 - L1MD2 LINE L1 0 6359 6245 183 129 0 0 chr3 140027968 140027999 -87496579 + (T)n Simple_repeat Simple_repeat 1 31 0 2281 106 0 3 chr3 140028335 140028646 -87495932 + AluSx SINE Alu 1 310 -2 263 328 69 26 chr3 140030884 140031000 -87493578 - MIR SINE MIR -77 185 65 2301 91 0 0 chr3 140031404 140031701 -87492877 - AluSg SINE Alu -13 297 1 1754 144 3 24 chr3 140033598 140033896 -87490682 + AluJo SINE Alu 1 292 -20 263 265 48 0 chr3 140035018 140035101 -87489477 - Tigger5 DNA MER2_type 0 2323 2237 233 204 19 0 chr3 140035101 140035155 -87489423 - Tigger5 DNA MER2_type -32 2291 2237 314 271 83 54 chr3 140035339 140035456 -87489122 - L1MC5 LINE L1 -32 7929 7817 2373 70 10 0 chr3 140035456 140035754 -87488824 - AluY SINE Alu -10 301 1 314 271 83 54 chr3 140035754 140035789 -87488789 - L1MC5 LINE L1 -144 7817 7784 768 249 58 0 chr3 140035789 140035994 -87488584 + MER20 DNA MER1_type 3 219 0 314 271 83 54 chr3 140035994 140036114 -87488464 - L1MC5 LINE L1 -177 7784 7584 289 154 18 9 chr3 140036114 140036181 -87488397 + Alu SINE Alu 1 55 -253 311 360 89 21 chr3 140036408 140036644 -87487934 - L1MC4 LINE L1 -180 7862 7611 315 161 0 0 chr3 140039778 140039834 -87484744 + T-rich Low_complexity Low_complexity 1 56 0 216 0 0 0 chr3 140041322 140041346 -87483232 + (CCCCCT)n Simple_repeat Simple_repeat 5 28 0 201 140 53 35 chr3 140043172 140043229 -87481349 + (CTGGGG)n Simple_repeat Simple_repeat 3 60 0 2419 63 0 3 chr3 140047691 140047992 -87476586 - AluY SINE Alu -11 300 1 2377 70 0 16 chr3 140048084 140048398 -87476180 - AluY SINE Alu 0 311 3 1657 107 4 0 chr3 140048402 140048636 -87475942 - AluSq SINE Alu -14 299 65 23 0 0 0 chr3 140051801 140051824 -87472754 + GC_rich Low_complexity Low_complexity 1 23 0 439 135 151 4 chr3 140052901 140053007 -87471571 - MLT1D LTR MaLR -375 130 8 2584 49 0 0 chr3 140053037 140053344 -87471234 + AluSp SINE Alu 1 307 -6 400 321 16 80 chr3 140153740 140154051 -87370527 + L2 LINE L2 2972 3262 -10 24 32 0 0 chr3 140155475 140155506 -87369072 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 140155605 140155627 -87368951 + AT_rich Low_complexity Low_complexity 1 22 0 1065 206 0 0 chr3 140155682 140155862 -87368716 + AluJb SINE Alu 50 229 -83 434 241 51 70 chr3 140155876 140156034 -87368544 + L1ME4a LINE L1 5966 6120 -1 2223 117 0 43 chr3 140156041 140156328 -87368250 + AluSx SINE Alu 1 274 -38 441 0 0 0 chr3 140156328 140156377 -87368201 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 2223 117 0 43 chr3 140156377 140156415 -87368163 + AluSx SINE Alu 274 312 0 23 0 0 0 chr3 140156540 140156563 -87368015 + AT_rich Low_complexity Low_complexity 1 23 0 2205 115 10 0 chr3 140156565 140156860 -87367718 - AluSx SINE Alu -14 298 1 259 316 15 21 chr3 140157174 140157348 -87367230 + MLT1L LTR MaLR 1 174 -337 214 290 0 14 chr3 140158508 140158577 -87366001 + C-rich Low_complexity Low_complexity 1 68 0 563 208 23 17 chr3 140158846 140159170 -87365408 + GA-rich Low_complexity Low_complexity 1 325 0 697 164 0 48 chr3 140159199 140159388 -87365190 + GA-rich Low_complexity Low_complexity 1 180 0 657 201 6 17 chr3 140159416 140159595 -87364983 + GA-rich Low_complexity Low_complexity 2 178 0 333 0 0 0 chr3 140159595 140159632 -87364946 + (CAGG)n Simple_repeat Simple_repeat 1 37 0 237 33 0 0 chr3 140159632 140159662 -87364916 + (GA)n Simple_repeat Simple_repeat 1 30 0 1860 161 7 3 chr3 140160166 140160451 -87364127 + AluJo SINE Alu 1 286 -26 230 200 22 0 chr3 140161933 140161978 -87362600 + MER3 DNA MER1_type 1 46 -163 * 900 231 13 8 chr3 140161961 140162199 -87362379 + MER3 DNA MER1_type 2340 2578 0 532 158 0 12 chr3 140162310 140162433 -87362145 - L1MB1 LINE L1 0 6168 6067 285 330 10 0 chr3 140162981 140163081 -87361497 + MIR SINE MIR 37 137 -71 997 277 68 54 chr3 140163132 140163477 -87361101 + L1ME4a LINE L1 5532 5889 -232 2296 68 21 0 chr3 140163477 140163799 -87360779 + AluSq SINE Alu 1 328 0 997 277 68 54 chr3 140163799 140163968 -87360610 + L1ME4a LINE L1 5889 6054 -67 2581 53 0 10 chr3 140165381 140165683 -87358895 + AluY SINE Alu 1 299 -12 21 36 0 0 chr3 140165730 140165758 -87358820 + AT_rich Low_complexity Low_complexity 1 28 0 1887 171 10 13 chr3 140165910 140166215 -87358363 + AluJb SINE Alu 1 304 -8 207 273 189 38 chr3 140166231 140166363 -87358215 + MIR SINE MIR 32 183 -79 1964 146 0 0 chr3 140168407 140168746 -87355832 - AluSx SINE Alu 0 340 2 3085 157 36 9 chr3 140168748 140169166 -87355412 + MER74A LTR ERVL 15 451 -107 180 0 0 0 chr3 140169166 140169186 -87355392 + (GCATG)n Simple_repeat Simple_repeat 1 20 0 3085 157 36 9 chr3 140169186 140169297 -87355281 + MER74A LTR ERVL 451 558 0 1581 153 9 37 chr3 140170170 140170282 -87354296 + L1MB5 LINE L1 5766 5880 -294 1735 165 0 48 chr3 140170282 140170591 -87353987 + AluJo SINE Alu 2 295 -17 1581 153 9 37 chr3 140170591 140170799 -87353779 + L1MB5 LINE L1 5880 6077 -97 183 42 0 0 chr3 140171151 140171175 -87353403 + (T)n Simple_repeat Simple_repeat 1 24 0 2319 92 0 0 chr3 140171188 140171481 -87353097 + AluSg SINE Alu 1 293 -17 2217 116 7 0 chr3 140171507 140171809 -87352769 + AluSx SINE Alu 1 304 -8 184 200 15 123 chr3 140172048 140172113 -87352465 - L2 LINE L2 -9 3304 3247 562 213 128 18 chr3 140172386 140172550 -87352028 + MER5A DNA MER1_type 1 182 -7 197 164 0 36 chr3 140173124 140173179 -87351399 + CT-rich Low_complexity Low_complexity 2 54 0 1998 145 0 14 chr3 140173460 140173756 -87350822 - AluJo SINE Alu -16 296 5 318 217 84 0 chr3 140176488 140176571 -87348007 - L3b LINE CR1 -217 1366 1277 277 231 169 54 chr3 140177100 140177230 -87347348 + MIR SINE MIR 67 211 -51 2232 116 0 3 chr3 140177377 140177670 -87346908 - AluSx SINE Alu -20 292 1 421 214 39 10 chr3 140177708 140177811 -87346767 - MIR SINE MIR -126 136 31 355 305 57 17 chr3 140178654 140178831 -87345747 + L1MC5 LINE L1 7711 7894 -67 988 227 78 26 chr3 140179613 140179921 -87344657 + MLT1B LTR MaLR 65 388 -2 583 252 36 0 chr3 140180513 140180652 -87343926 + MIR3 SINE MIR 62 205 -3 854 150 7 0 chr3 140181009 140181149 -87343429 + MLT2B1 LTR ERVL 3 143 -377 2370 121 65 35 chr3 140181149 140181579 -87342999 - MSTB2 LTR MaLR 0 457 15 2111 176 19 3 chr3 140181582 140181958 -87342620 + MLT2B1 LTR ERVL 139 520 0 182 147 0 0 chr3 140182563 140182597 -87341981 + L2 LINE L2 3019 3052 -220 1810 175 97 21 chr3 140183536 140183970 -87340608 - MLT1C LTR MaLR 0 467 1 504 257 166 17 chr3 140184045 140184220 -87340358 - MIR SINE MIR -21 241 41 381 351 29 19 chr3 140185193 140185398 -87339180 - MIR SINE MIR -52 210 4 416 263 58 19 chr3 140188848 140189004 -87335574 - MIR SINE MIR -12 250 89 216 179 89 36 chr3 140189029 140189085 -87335493 - L2 LINE L2 -62 3251 3193 204 135 0 0 chr3 140189085 140189122 -87335456 + (T)n Simple_repeat Simple_repeat 1 37 0 2152 122 0 22 chr3 140189124 140189443 -87335135 - AluSx SINE Alu 0 312 1 636 200 48 21 chr3 140190469 140190614 -87333964 + MIR SINE MIR 82 230 -32 198 200 100 0 chr3 140190642 140190692 -87333886 + L2 LINE L2 3168 3222 -50 196 200 200 15 chr3 140191045 140191110 -87333468 - MIR3 SINE MIR -34 174 98 439 324 14 7 chr3 140191568 140191707 -87332871 + MER5A DNA MER1_type 50 189 0 518 247 143 69 chr3 140191710 140191941 -87332637 + MIR SINE MIR 12 259 -3 210 196 137 0 chr3 140193968 140194019 -87330559 - L2 LINE L2 0 3313 3256 888 154 35 0 chr3 140194128 140194271 -87330307 + FAM SINE Alu 28 175 -10 242 234 47 0 chr3 140194728 140194792 -87329786 - MER5B DNA MER1_type 0 178 112 1995 139 16 7 chr3 140195330 140195639 -87328939 - AluJo SINE Alu 0 312 1 193 232 98 27 chr3 140195861 140195973 -87328605 - L2 LINE L2 -82 3231 3112 328 206 48 87 chr3 140196966 140197092 -87327486 + MIR SINE MIR 21 141 -67 310 250 74 37 chr3 140197480 140197588 -87326990 - MER5B DNA MER1_type -60 118 7 201 39 0 0 chr3 140197641 140197667 -87326911 + (CCCTAA)n Simple_repeat Simple_repeat 6 31 0 1997 147 0 0 chr3 140197815 140198154 -87326424 + AluSx SINE Alu 1 339 0 604 191 0 0 chr3 140198156 140198261 -87326317 - AluJo/FLAM SINE Alu -201 111 7 196 335 127 52 chr3 140198448 140198535 -87326043 + L2 LINE L2 2558 2637 -677 1661 153 3 42 chr3 140198535 140198823 -87325755 - AluJo SINE Alu -14 298 22 196 335 127 52 chr3 140198823 140198947 -87325631 + L2 LINE L2 2637 2785 -529 318 331 128 7 chr3 140199065 140199213 -87325365 - L2 LINE L2 -5 3267 3102 493 247 54 111 chr3 140199863 140199940 -87324638 + L1ME4a LINE L1 5601 5681 -440 680 194 0 8 chr3 140199940 140200069 -87324509 - FLAM_A SINE Alu -5 128 1 493 247 54 111 chr3 140200069 140200359 -87324219 + L1ME4a LINE L1 5681 5947 -174 2417 82 0 0 chr3 140200364 140200656 -87323922 - AluSg SINE Alu -18 292 1 22 35 0 0 chr3 140200749 140200778 -87323800 + AT_rich Low_complexity Low_complexity 1 29 0 228 35 0 0 chr3 140200988 140201017 -87323561 + (TA)n Simple_repeat Simple_repeat 2 30 0 2311 107 0 3 chr3 140201018 140201316 -87323262 - AluSc SINE Alu -12 297 1 2258 107 17 0 chr3 140201316 140201616 -87322962 - AluSx SINE Alu -7 305 1 202 263 25 38 chr3 140201958 140202038 -87322540 + L2 LINE L2 3190 3268 -4 314 230 38 25 chr3 140202598 140202719 -87321859 + MIR SINE MIR 68 199 -9 25 0 0 0 chr3 140203466 140203491 -87321087 + GC_rich Low_complexity Low_complexity 1 25 0 252 276 35 11 chr3 140203949 140204036 -87320542 + GA-rich Low_complexity Low_complexity 3 91 0 540 224 12 6 chr3 140204040 140204201 -87320377 + CT-rich Low_complexity Low_complexity 1 162 0 1858 149 9 38 chr3 140204201 140204517 -87320061 - AluJo SINE Alu -5 307 1 207 342 142 0 chr3 140204532 140204652 -87319926 - L2 LINE L2 -8 3305 3169 1986 112 49 25 chr3 140205969 140206255 -87318323 - AluSx SINE Alu -19 293 1 1630 196 0 17 chr3 140206504 140206840 -87317738 - AluJo SINE Alu 0 331 1 291 266 81 24 chr3 140206840 140206964 -87317614 - MIR SINE MIR -57 151 21 309 221 0 0 chr3 140207349 140207453 -87317125 + GA-rich Low_complexity Low_complexity 1 104 0 225 308 96 32 chr3 140207473 140207629 -87316949 + MIR3 SINE MIR 33 198 -10 207 71 0 0 chr3 140208329 140208357 -87316221 - MER91 DNA MER1_type -77 63 36 236 273 0 34 chr3 140211044 140211132 -87313446 + CT-rich Low_complexity Low_complexity 2 86 0 252 315 178 39 chr3 140211379 140211998 -87312580 + L2 LINE L2 2029 2733 -581 * 357 322 42 98 chr3 140211969 140212398 -87312180 + L2 LINE L2 2865 3269 -3 475 236 16 39 chr3 140213496 140213623 -87310955 + MER94 DNA DNA 1 124 -10 384 269 67 0 chr3 140214088 140214207 -87310371 + MIR SINE MIR 63 189 -73 600 148 35 9 chr3 140214355 140214470 -87310108 - MIR SINE MIR -108 154 37 243 88 0 0 chr3 140214791 140214825 -87309753 + (TG)n Simple_repeat Simple_repeat 2 35 0 201 291 162 39 chr3 140215771 140215950 -87308628 - L3b LINE CR1 -196 1387 1187 298 268 21 0 chr3 140216114 140216211 -87308367 + (TG)n Simple_repeat Simple_repeat 1 99 0 265 214 19 0 chr3 140216225 140216328 -87308250 + (TG)n Simple_repeat Simple_repeat 1 105 0 3360 174 34 4 chr3 140217171 140217848 -87306730 - L1MB4 LINE L1 0 6180 5484 1134 215 68 30 chr3 140217955 140218323 -87306255 - L2 LINE L2 -342 2972 2591 779 198 108 0 chr3 140218418 140218575 -87306003 - MER45A DNA AcHobo -4 174 1 269 196 39 0 chr3 140218620 140218671 -87305907 + MER96 DNA MER1_type? 47 99 -76 638 262 25 20 chr3 140218993 140219195 -87305383 - MIR SINE MIR -44 218 16 324 250 160 0 chr3 140219336 140219436 -87305142 - MIR SINE MIR -40 222 107 244 262 41 57 chr3 140220098 140220220 -87304358 + MIR SINE MIR 31 150 -112 182 281 211 0 chr3 140221761 140221875 -87302703 + MIR3 SINE MIR 10 147 -61 186 103 0 0 chr3 140222117 140222146 -87302432 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 1682 87 0 14 chr3 140222152 140222370 -87302208 - AluSg/x SINE Alu -5 307 93 376 293 48 94 chr3 140222479 140222998 -87301580 - L2 LINE L2 -72 3200 2673 2240 222 22 15 chr3 140225534 140226123 -87298455 + L1ME4a LINE L1 3776 4368 -1778 333 250 0 0 chr3 140226134 140226194 -87298384 - MER2 DNA MER2_type -1 344 285 420 185 0 0 chr3 140226216 140226281 -87298297 + MER2 DNA MER2_type 281 345 0 514 186 0 39 chr3 140226281 140226383 -87298195 - MER2 DNA MER2_type -247 98 1 2231 204 36 48 chr3 140226385 140227195 -87297383 + L1ME4a LINE L1 4381 5243 -903 323 200 136 8 chr3 140227290 140227415 -87297163 + L1ME2 LINE L1 4906 5046 -1100 * 1531 191 223 74 chr3 140227396 140228045 -87296533 + L1ME2 LINE L1 5419 6164 0 360 0 0 0 chr3 140228952 140228992 -87295586 + (TG)n Simple_repeat Simple_repeat 2 41 0 1697 145 61 44 chr3 140229119 140229416 -87295162 + AluJo SINE Alu 1 302 -10 687 167 42 7 chr3 140230031 140230128 -87294450 - MER53 DNA DNA -18 171 66 288 0 0 0 chr3 140230128 140230160 -87294418 + (TA)n Simple_repeat Simple_repeat 2 33 0 687 167 42 7 chr3 140230160 140230206 -87294372 - MER53 DNA DNA -123 66 23 345 327 47 43 chr3 140231627 140231838 -87292740 - MIR SINE MIR -50 212 1 1625 172 34 18 chr3 140232116 140232442 -87292136 - L1MB7 LINE L1 -16 6168 5838 1921 121 72 3 chr3 140232446 140232778 -87291800 - MER46B DNA MER2_type 0 236 7 1947 175 42 12 chr3 140232784 140233185 -87291393 - L1MB7 LINE L1 -347 5837 5425 1163 279 125 53 chr3 140233637 140233658 -87290920 + L1ME4a LINE L1 5282 5300 -821 2350 110 0 3 chr3 140233658 140233959 -87290619 + AluSg SINE Alu 1 300 -10 1163 279 125 53 chr3 140233959 140234425 -87290153 + L1ME4a LINE L1 5300 5846 -275 1989 157 3 3 chr3 140234425 140234724 -87289854 + AluJb SINE Alu 3 301 -11 1163 279 125 53 chr3 140234724 140235003 -87289575 + L1ME4a LINE L1 5846 6104 -17 2255 88 3 73 chr3 140235725 140236054 -87288524 - AluSx SINE Alu -6 306 1 848 183 159 38 chr3 140236741 140237030 -87287548 + MER33 DNA MER1_type 1 324 0 428 305 48 12 chr3 140237526 140237693 -87286885 + MIR3 SINE MIR 24 196 -12 2165 107 7 3 chr3 140239111 140239400 -87285178 + AluSx SINE Alu 1 290 -22 1055 182 0 0 chr3 140239400 140239565 -87285013 + AluSg/x SINE Alu 132 296 -14 355 281 11 0 chr3 140239581 140239670 -87284908 + L2 LINE L2 3224 3313 0 964 241 103 32 chr3 140239810 140240180 -87284398 + MSTD LTR MaLR 1 396 0 264 292 24 65 chr3 140240480 140240648 -87283930 + MIR3 SINE MIR 41 201 -7 28 0 0 0 chr3 140241073 140241101 -87283477 + AT_rich Low_complexity Low_complexity 1 28 0 583 264 117 59 chr3 140241104 140241538 -87283040 + MLT1J LTR MaLR 1 446 0 216 238 48 0 chr3 140241592 140241655 -87282923 + CT-rich Low_complexity Low_complexity 2 67 0 285 275 46 28 chr3 140242023 140242132 -87282446 + MIR SINE MIR 81 191 -71 220 280 20 0 chr3 140243914 140243964 -87280614 + L2 LINE L2 3208 3258 -14 187 289 19 77 chr3 140244584 140244688 -87279890 + MIR SINE MIR 16 113 -95 871 282 33 12 chr3 140245202 140245447 -87279131 - MIR SINE MIR -11 251 2 1059 187 0 35 chr3 140246972 140247170 -87277408 + AluJb SINE Alu 107 297 -15 2186 127 0 13 chr3 140247202 140247518 -87277060 + AluSx SINE Alu 1 312 0 1476 255 39 59 chr3 140247748 140248242 -87276336 - LTR16C LTR ERVL -7 484 1 562 236 20 72 chr3 140248244 140248439 -87276139 + MIR SINE MIR 77 261 -1 303 228 173 8 chr3 140248999 140249126 -87275452 - MER103 DNA DNA -9 157 10 2687 180 82 60 chr3 140249145 140249516 -87275062 + MER44D DNA MER2_type 2 363 -2124 1944 171 0 22 chr3 140249516 140249831 -87274747 - AluJb SINE Alu -4 308 1 2687 180 82 60 chr3 140249831 140249856 -87274722 + MER44D DNA MER2_type 363 386 -2101 2389 63 21 0 chr3 140249856 140250141 -87274437 - AluY SINE Alu -20 291 1 2687 180 82 60 chr3 140250141 140250459 -87274119 + MER44D DNA MER2_type 386 605 0 248 320 13 0 chr3 140250545 140250623 -87273955 + L2 LINE L2 3194 3272 0 * 289 303 99 40 chr3 140250604 140250756 -87273822 + L3b LINE CR1 1201 1361 -222 222 212 45 76 chr3 140250913 140250979 -87273599 - L2 LINE L2 -2 3270 3207 353 218 35 153 chr3 140251909 140252111 -87272467 - MER5B DNA MER1_type 0 178 1 841 305 140 46 chr3 140252128 140252741 -87271837 - L3 LINE CR1 -50 1527 857 231 306 8 25 chr3 140255182 140255303 -87269275 + GA-rich Low_complexity Low_complexity 2 120 0 210 282 129 37 chr3 140256807 140256970 -87267608 - MIR3 SINE MIR -12 196 19 21 0 0 0 chr3 140258721 140258742 -87265836 + GC_rich Low_complexity Low_complexity 1 21 0 188 0 0 69 chr3 140258897 140258926 -87265652 + (CCG)n Simple_repeat Simple_repeat 2 28 0 233 215 15 15 chr3 140258944 140259009 -87265569 + (CCG)n Simple_repeat Simple_repeat 3 67 0 21 36 0 0 chr3 140259246 140259274 -87265304 + GC_rich Low_complexity Low_complexity 1 28 0 210 234 0 0 chr3 140259906 140259953 -87264625 + G-rich Low_complexity Low_complexity 2 48 0 233 275 0 67 chr3 140260500 140260678 -87263900 + C-rich Low_complexity Low_complexity 6 171 0 314 230 38 25 chr3 140261360 140261481 -87263097 - MIR SINE MIR -9 199 68 202 263 25 38 chr3 140262041 140262121 -87262457 - L2 LINE L2 -4 3268 3190 2258 107 17 0 chr3 140262463 140262763 -87261815 + AluSx SINE Alu 1 305 -7 2346 108 0 0 chr3 140262763 140263060 -87261518 + AluSc SINE Alu 1 297 -12 228 35 0 0 chr3 140263061 140263090 -87261488 + (TA)n Simple_repeat Simple_repeat 2 30 0 22 35 0 0 chr3 140263300 140263329 -87261249 + AT_rich Low_complexity Low_complexity 1 29 0 2417 82 0 0 chr3 140263422 140263714 -87260864 + AluSg SINE Alu 1 292 -18 493 247 54 111 chr3 140263719 140264009 -87260569 - L1ME4a LINE L1 -174 5947 5681 680 194 0 8 chr3 140264009 140264138 -87260440 + FLAM_A SINE Alu 1 128 -5 493 247 54 111 chr3 140264138 140264215 -87260363 - L1ME4a LINE L1 -440 5681 5601 318 331 128 7 chr3 140264865 140265013 -87259565 + L2 LINE L2 3102 3267 -5 196 335 127 52 chr3 140265131 140265255 -87259323 - L2 LINE L2 -529 2785 2672 1661 153 3 42 chr3 140265255 140265543 -87259035 + AluJo SINE Alu 22 298 -14 196 335 127 52 chr3 140265543 140265630 -87258948 - L2 LINE L2 -642 2672 2558 1740 173 7 33 chr3 140265817 140266123 -87258455 + AluJo SINE Alu 7 304 -8 936 229 18 14 chr3 140266545 140266689 -87257889 + L1MB7 LINE L1 5951 6098 -86 2343 114 57 26 chr3 140266689 140266881 -87257697 + Tigger2a DNA MER2_type 1 186 -2522 2063 142 20 0 chr3 140266881 140267177 -87257401 - AluSx SINE Alu -10 302 1 2343 114 57 26 chr3 140267177 140267405 -87257173 + Tigger2a DNA MER2_type 186 434 0 936 229 18 14 chr3 140267405 140267483 -87257095 + L1MB7 LINE L1 6098 6174 -10 2349 81 3 0 chr3 140267564 140267871 -87256707 - AluSp SINE Alu 0 308 1 1973 154 0 7 chr3 140269340 140269639 -87254939 + AluSx SINE Alu 1 297 -15 1000 171 0 13 chr3 140269639 140269797 -87254781 + AluJb SINE Alu 134 289 -23 366 80 0 0 chr3 140269797 140269847 -87254731 + (GGAA)n Simple_repeat Simple_repeat 1 50 0 893 181 116 58 chr3 140269940 140270217 -87254361 + L1MB8 LINE L1 5886 6178 0 212 310 35 0 chr3 140271221 140271308 -87253270 - MIR SINE MIR -64 144 55 732 201 180 0 chr3 140271649 140271838 -87252740 + MER58A DNA MER1_type 2 224 0 3636 201 36 59 chr3 140271838 140271875 -87252703 + L1ME1 LINE L1 4965 5001 -1165 2232 118 0 0 chr3 140271875 140272164 -87252414 + AluSx SINE Alu 1 289 -23 2255 94 0 39 chr3 140272168 140272476 -87252102 + AluY SINE Alu 3 298 -13 1735 164 34 14 chr3 140272485 140272777 -87251801 + AluJo SINE Alu 1 298 -14 3636 201 36 59 chr3 140272777 140273036 -87251542 + L1ME1 LINE L1 5012 5275 -891 2001 119 41 27 chr3 140273036 140273331 -87251247 + AluSx SINE Alu 1 299 -13 3636 201 36 59 chr3 140273331 140274250 -87250328 + L1ME1 LINE L1 5275 6161 -5 629 246 7 8 chr3 140274865 140275050 -87249528 + L1MC4 LINE L1 6743 6948 -1035 258 284 35 35 chr3 140275211 140275327 -87249251 + MIR SINE MIR 34 149 -59 2145 136 3 3 chr3 140275605 140275906 -87248672 - AluSx SINE Alu -11 301 1 1118 76 0 0 chr3 140275906 140276037 -87248541 - AluSq/x SINE Alu -178 135 5 1793 161 14 82 chr3 140276304 140276720 -87247858 + MLT1B LTR MaLR 3 390 0 2119 144 0 0 chr3 140276927 140277226 -87247352 + AluSx SINE Alu 1 299 -13 337 217 0 24 chr3 140277252 140277335 -87247243 + L1MC5 LINE L1 7827 7907 -54 418 293 68 21 chr3 140278354 140278545 -87246033 - LTR67 LTR ERVL 0 557 358 526 230 170 50 chr3 140279034 140279339 -87245239 + L1ME3A LINE L1 5361 5712 -458 1587 184 22 0 chr3 140279340 140279612 -87244966 - AluJo SINE Alu -9 303 26 928 168 0 7 chr3 140279622 140279771 -87244807 - AluJo SINE Alu -162 150 3 1438 286 53 0 chr3 140279771 140280208 -87244370 + L1ME3A LINE L1 5702 6161 -9 201 147 0 0 chr3 140280296 140280330 -87244248 - L2 LINE L2 -18 3254 3221 194 259 25 49 chr3 140281054 140281135 -87243443 - L2 LINE L2 -56 3216 3138 1884 150 31 3 chr3 140281157 140281450 -87243128 - AluSx SINE Alu -11 301 1 495 233 17 111 chr3 140281451 140281513 -87243065 - MIR SINE MIR -4 258 192 1973 161 10 6 chr3 140281513 140281824 -87242754 - AluJo SINE Alu 0 312 1 495 233 17 111 chr3 140281824 140281933 -87242645 - MIR SINE MIR -70 192 103 1106 235 57 41 chr3 140281938 140282415 -87242163 + MLT1F1 LTR MaLR 1 567 0 3185 163 17 10 chr3 140282492 140283076 -87241502 - L1PA16 LINE L1 -2 6164 5577 2020 130 34 3 chr3 140283087 140283379 -87241199 - AluSq SINE Alu -12 301 1 458 196 21 10 chr3 140283511 140283608 -87240970 + MIR SINE MIR 103 200 -62 2343 96 0 7 chr3 140283677 140283978 -87240600 - AluSc SINE Alu -10 299 1 253 281 219 9 chr3 140284031 140284137 -87240441 + MIR SINE MIR 120 253 -9 2058 114 7 39 chr3 140284137 140284443 -87240135 + AluSx SINE Alu 1 296 -16 754 163 0 15 chr3 140284504 140284639 -87239939 - FLAM_C SINE Alu 0 133 1 400 321 16 80 chr3 140286063 140286374 -87238204 - L2 LINE L2 -10 3262 2972 2505 93 0 3 chr3 140286990 140287303 -87237275 - AluSx SINE Alu 0 312 1 186 325 0 25 chr3 140287907 140287987 -87236591 - L2 LINE L2 -2 3270 3193 189 0 0 0 chr3 140288135 140288156 -87236422 + (GA)n Simple_repeat Simple_repeat 2 22 0 492 309 29 0 chr3 140288394 140288530 -87236048 - MIR SINE MIR 0 262 123 422 251 56 99 chr3 140288534 140288954 -87235624 + MLT1C LTR MaLR 1 372 -95 620 323 25 25 chr3 140291000 140291235 -87233343 + MIR SINE MIR 7 241 -21 508 258 84 65 chr3 140291964 140292286 -87232292 - MER102a DNA MER1_type -2 328 1 2191 89 4 0 chr3 140293318 140293587 -87230991 - AluY SINE Alu -41 270 1 207 313 10 42 chr3 140293598 140293694 -87230884 + MIR3 SINE MIR 108 200 -8 190 183 33 83 chr3 140294408 140294468 -87230110 + L2 LINE L2 3011 3067 -246 260 277 12 24 chr3 140294564 140294647 -87229931 - L2 LINE L2 -53 3219 3138 2541 52 0 29 chr3 140294766 140295074 -87229504 - AluY SINE Alu -12 299 1 915 138 0 0 chr3 140295101 140295224 -87229354 - FLAM_C SINE Alu -19 124 2 353 161 81 11 chr3 140295236 140295323 -87229255 + MER53 DNA DNA 97 189 0 270 318 47 24 chr3 140295327 140295497 -87229081 - L2 LINE L2 -176 3096 2923 907 274 46 58 chr3 140295538 140295676 -87228902 - L2 LINE L2 -457 2857 2719 2169 130 0 19 chr3 140295676 140295992 -87228586 - AluSx SINE Alu -2 310 1 907 274 46 58 chr3 140295992 140296352 -87228226 - L2 LINE L2 -595 2719 2365 398 333 128 0 chr3 140296657 140296852 -87227726 - Charlie8 DNA MER1_type -2185 232 13 346 314 25 8 chr3 140296950 140297071 -87227507 - MER5A DNA MER1_type -22 167 45 338 278 97 21 chr3 140296951 140297095 -87227483 + MER5A DNA MER1_type 35 189 0 * 275 316 215 21 chr3 140297939 140298069 -87226509 - L2 LINE L2 -1366 1948 1845 2318 110 0 0 chr3 140298069 140298361 -87226217 + AluSx SINE Alu 1 292 -20 275 316 215 21 chr3 140298361 140298756 -87225822 - L2 LINE L2 -1469 1845 1321 1841 179 0 3 chr3 140298957 140299254 -87225324 + AluJb SINE Alu 1 296 -16 2379 93 0 7 chr3 140301718 140302020 -87222558 + AluSq SINE Alu 1 300 -13 24 53 0 0 chr3 140302517 140302555 -87222023 + AT_rich Low_complexity Low_complexity 1 38 0 2465 67 0 7 chr3 140303884 140304182 -87220396 + AluY SINE Alu 1 296 -15 542 217 43 97 chr3 140306053 140306260 -87218318 - MIR SINE MIR -35 227 32 496 282 45 45 chr3 140306504 140306706 -87217872 + MER20 DNA MER1_type 1 202 -17 1537 185 20 7 chr3 140306836 140307134 -87217444 - AluJo SINE Alu -10 302 1 2008 145 17 7 chr3 140309237 140309534 -87215044 + MER1B DNA MER1_type 40 339 0 21 57 0 0 chr3 140310830 140310865 -87213713 + AT_rich Low_complexity Low_complexity 1 35 0 23 33 0 0 chr3 140312021 140312051 -87212527 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr3 140313151 140313181 -87211397 + AT_rich Low_complexity Low_complexity 1 30 0 2177 91 11 3 chr3 140313803 140314090 -87210488 + AluSx SINE Alu 10 298 -14 22 0 0 0 chr3 140314993 140315015 -87209563 + AT_rich Low_complexity Low_complexity 1 22 0 249 331 128 20 chr3 140315105 140315253 -87209325 + L2 LINE L2 3109 3272 0 333 299 101 58 chr3 140315610 140315729 -87208849 + L3 LINE CR1 641 753 -824 2708 135 46 54 chr3 140315729 140316246 -87208332 + L1MB3 LINE L1 5668 6180 -3 333 299 101 58 chr3 140316246 140316471 -87208107 + L3 LINE CR1 753 1000 -577 1802 145 0 69 chr3 140317229 140317546 -87207032 - AluJb SINE Alu -17 295 1 1653 152 18 11 chr3 140317798 140318081 -87206497 + AluJo SINE Alu 12 296 -16 2083 189 30 70 chr3 140318090 140318446 -87206132 + L1MB7 LINE L1 5667 5995 -189 761 53 0 0 chr3 140318446 140318540 -87206038 + L1MA1 LINE L1 6205 6298 -4 2083 189 30 70 chr3 140318540 140318723 -87205855 + L1MB7 LINE L1 5995 6184 0 653 112 0 20 chr3 140318730 140318828 -87205750 + FLAM_A SINE Alu 40 135 -7 1675 166 87 36 chr3 140319674 140320030 -87204548 - MLT1A2 LTR MaLR 0 374 1 389 260 21 0 chr3 140320042 140320138 -87204440 - MER58C DNA MER1_type -1 214 117 967 139 86 53 chr3 140320147 140320334 -87204244 + AluJb SINE Alu 120 312 0 2479 57 7 3 chr3 140320429 140320726 -87203852 - AluY SINE Alu -13 298 1 4209 141 56 34 chr3 140320926 140321184 -87203394 - L1MB4 LINE L1 -21 6159 5908 2158 108 0 10 chr3 140321184 140321480 -87203098 - AluSx SINE Alu -19 293 1 4209 141 56 34 chr3 140321480 140322076 -87202502 - L1MB4 LINE L1 -272 5908 5290 264 220 126 3 chr3 140322097 140322219 -87202359 - MIR SINE MIR 0 262 89 204 40 0 0 chr3 140322283 140322308 -87202270 + (CA)n Simple_repeat Simple_repeat 2 26 0 1440 157 66 2 chr3 140322737 140323078 -87201500 + MSTB1 LTR MaLR 7 430 -2 2283 210 106 77 chr3 140323565 140324921 -87199657 + L1MC4a LINE L1 6444 7855 -140 1969 138 3 3 chr3 140324921 140325217 -87199361 + AluJb SINE Alu 1 296 -16 2283 210 106 77 chr3 140325217 140325363 -87199215 + L1MC4a LINE L1 7855 7995 0 409 176 0 0 chr3 140325972 140326040 -87198538 - MIR SINE MIR -5 257 190 528 281 27 34 chr3 140326205 140326351 -87198227 + L2 LINE L2 3123 3267 -5 2030 129 0 13 chr3 140326686 140326988 -87197590 - AluSx SINE Alu -14 298 1 2467 60 0 3 chr3 140327162 140327462 -87197116 - AluY SINE Alu -12 299 1 413 196 41 21 chr3 140327849 140327946 -87196632 + MIR SINE MIR 48 146 -116 607 256 112 41 chr3 140328759 140328839 -87195739 + Charlie8 DNA MER1_type 1 74 -267 2904 3 0 0 chr3 140328839 140329148 -87195430 + AluYa5 SINE Alu 1 309 -2 607 256 112 41 chr3 140329148 140329309 -87195269 + Charlie8 DNA MER1_type 74 259 -82 2257 92 3 10 chr3 140329643 140329949 -87194629 + AluSg SINE Alu 1 304 -6 920 186 122 11 chr3 140331325 140331513 -87193065 - MER3 DNA MER1_type 0 209 1 1662 129 19 83 chr3 140332953 140333278 -87191300 + AluJo SINE Alu 1 304 -8 261 288 62 82 chr3 140334360 140334506 -87190072 - MIR SINE MIR -70 192 50 452 328 29 11 chr3 140335127 140335301 -87189277 - MER5A DNA MER1_type -6 183 7 674 153 161 0 chr3 140335596 140335714 -87188864 - FLAM_C SINE Alu -5 138 2 244 270 153 51 chr3 140335765 140335902 -87188676 + MIR SINE MIR 41 191 -71 4372 180 35 1 chr3 140338175 140338882 -87185696 + MER44D DNA MER2_type 3 605 0 579 202 0 0 chr3 140338906 140339005 -87185573 + AluJ/FLAM SINE Alu 2 100 -212 2161 126 0 3 chr3 140340028 140340329 -87184249 - AluSx SINE Alu -11 301 2 1787 168 3 10 chr3 140340371 140340663 -87183915 + AluJo SINE Alu 1 290 -22 195 139 0 0 chr3 140340670 140340706 -87183872 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 22 0 0 0 chr3 140340838 140340860 -87183718 + AT_rich Low_complexity Low_complexity 1 22 0 180 0 0 0 chr3 140341126 140341146 -87183432 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1564 161 7 46 chr3 140341178 140341337 -87183241 - AluJo SINE Alu -19 293 150 2322 94 0 0 chr3 140341337 140341635 -87182943 - AluSc SINE Alu -11 298 1 1564 161 7 46 chr3 140341635 140341780 -87182798 - AluJo SINE Alu -162 150 1 180 0 0 0 chr3 140341791 140341811 -87182767 + (TTG)n Simple_repeat Simple_repeat 2 21 0 1969 103 0 8 chr3 140341814 140342075 -87182503 - AluSc SINE Alu -31 278 20 1782 129 61 24 chr3 140342245 140342539 -87182039 - AluSx SINE Alu -7 305 1 944 248 77 48 chr3 140342669 140343044 -87181534 - L1ME4a LINE L1 -234 5887 5502 2106 109 13 22 chr3 140343477 140343788 -87180790 + AluSx SINE Alu 1 308 -4 1915 142 0 11 chr3 140344082 140344364 -87180214 - AluJb SINE Alu -20 292 14 304 244 156 0 chr3 140344613 140344703 -87179875 - L2 LINE L2 -16 3297 3194 183 382 59 20 chr3 140344746 140344898 -87179680 - L2 LINE L2 -537 2777 2620 207 0 0 0 chr3 140344958 140344981 -87179597 + (TG)n Simple_repeat Simple_repeat 1 23 0 6070 114 76 43 chr3 140345187 140346274 -87178304 + Tigger3b DNA MER2_type 1 1123 -108 347 245 131 57 chr3 140346803 140347085 -87177493 - L1MC4a LINE L1 -1674 6134 5832 1826 236 159 33 chr3 140347403 140348226 -87176352 + HAL1b LINE L1 77 1003 -345 1316 175 29 36 chr3 140348239 140348507 -87176071 + AluJo SINE Alu 27 294 -18 267 31 0 0 chr3 140348507 140348539 -87176039 + (CA)n Simple_repeat Simple_repeat 2 33 0 1316 175 29 36 chr3 140348539 140348550 -87176028 + AluJo SINE Alu 294 304 -8 279 328 52 21 chr3 140348613 140348805 -87175773 + HAL1b LINE L1 1149 1346 -2 2213 112 3 7 chr3 140350217 140350521 -87174057 + AluSx SINE Alu 1 303 -9 1614 156 52 42 chr3 140350733 140351040 -87173538 + AluJo SINE Alu 1 310 -2 24 53 0 0 chr3 140351814 140351852 -87172726 + AT_rich Low_complexity Low_complexity 1 38 0 2285 103 3 0 chr3 140351917 140352207 -87172371 + AluSx SINE Alu 1 291 -21 337 243 117 10 chr3 140352535 140352638 -87171940 - MIR3 SINE MIR -19 189 76 282 291 75 62 chr3 140352765 140352821 -87171757 + L1ME LINE L1 5221 5275 -846 2623 11 0 0 chr3 140352821 140353103 -87171475 + AluYa5 SINE Alu 28 309 -2 282 291 75 62 chr3 140353103 140353470 -87171108 + L1ME LINE L1 5275 5654 -467 512 211 10 113 chr3 140353681 140353885 -87170693 + L1MC5 LINE L1 6784 6966 -995 400 176 14 0 chr3 140354277 140354351 -87170227 + L1MC5 LINE L1 6971 7045 -916 311 242 55 79 chr3 140354410 140354575 -87170003 + L1MC4a LINE L1 6046 6206 -1602 1319 149 18 104 chr3 140355523 140355858 -87168720 - MLT1B LTR MaLR -82 308 3 1091 76 0 0 chr3 140356125 140356256 -87168322 + AluSq/x SINE Alu 5 135 -178 2117 136 3 3 chr3 140356256 140356557 -87168021 + AluSx SINE Alu 1 301 -11 267 293 26 26 chr3 140356835 140356951 -87167627 - MIR SINE MIR -59 149 34 599 205 0 0 chr3 140357170 140357297 -87167281 - L1MC4 LINE L1 -1094 6948 6822 3509 187 37 49 chr3 140357912 140358830 -87165748 - L1ME1 LINE L1 -5 6161 5255 2324 101 0 26 chr3 140358831 140359138 -87165440 - AluSx SINE Alu -13 299 1 24 53 0 0 chr3 140359203 140359241 -87165337 + AT_rich Low_complexity Low_complexity 1 38 0 1637 156 52 42 chr3 140360015 140360322 -87164256 - AluJo SINE Alu -2 310 1 2216 112 3 7 chr3 140360534 140360838 -87163740 - AluSx SINE Alu -9 303 1 230 329 40 13 chr3 140362251 140362403 -87162175 - HAL1b LINE L1 -2 1346 1191 1340 177 28 35 chr3 140362506 140362517 -87162061 - AluJo SINE Alu -8 304 294 267 31 0 0 chr3 140362517 140362549 -87162029 + (TG)n Simple_repeat Simple_repeat 2 33 0 1340 177 28 35 chr3 140362549 140362819 -87161759 - AluJo SINE Alu -18 294 25 1520 239 178 17 chr3 140362938 140363653 -87160925 - HAL1b LINE L1 -442 906 77 276 252 18 27 chr3 140363971 140364082 -87160496 + L1MC4a LINE L1 5832 5941 -1867 5514 115 76 43 chr3 140364784 140365871 -87158707 - Tigger3b DNA MER2_type -108 1123 1 207 0 0 0 chr3 140366077 140366100 -87158478 + (CA)n Simple_repeat Simple_repeat 1 23 0 699 278 101 0 chr3 140466237 140466464 -87058114 - Charlie1 DNA MER1_type -2511 250 1 332 240 152 32 chr3 140466498 140466623 -87057955 - HAL1 LINE L1 -1227 1280 1141 442 214 8 15 chr3 140466635 140466766 -87057812 + CT-rich Low_complexity Low_complexity 1 130 0 1938 163 0 10 chr3 140466766 140467060 -87057518 - AluJb SINE Alu -21 291 1 819 259 157 8 chr3 140467060 140467423 -87057155 - HAL1 LINE L1 -1349 1158 742 2140 155 35 37 chr3 140467580 140468131 -87056447 + MLT2A2 LTR ERVL 1 554 0 1715 144 15 4 chr3 140468267 140468530 -87056048 - AluJb SINE Alu -22 290 25 2113 133 19 0 chr3 140468933 140469241 -87055337 + LTR57 LTR ERVL 91 404 -7 885 172 57 6 chr3 140469246 140469403 -87055175 + FRAM SINE Alu 3 167 -9 1912 134 29 0 chr3 140469681 140469979 -87054599 - AluSx SINE Alu 0 306 1 874 142 60 0 chr3 140469982 140470116 -87054462 - FRAM SINE Alu -16 160 19 243 302 42 10 chr3 140470400 140470496 -87054082 - HAL1 LINE L1 -1772 735 637 497 195 0 0 chr3 140470514 140470601 -87053977 + MER45A DNA AcHobo 1 87 -91 243 0 0 0 chr3 140470602 140470629 -87053949 + (A)n Simple_repeat Simple_repeat 1 27 0 538 153 59 0 chr3 140470760 140470845 -87053733 + MER45A DNA AcHobo 89 178 0 370 292 72 47 chr3 140470852 140471088 -87053490 - HAL1 LINE L1 -1889 618 377 1186 140 0 0 chr3 140471139 140471303 -87053275 - FRAM SINE Alu -12 164 1 355 174 159 98 chr3 140471387 140471519 -87053059 - HAL1 LINE L1 -2350 157 18 2356 53 42 3 chr3 140471674 140471959 -87052619 + AluY SINE Alu 1 296 -15 271 275 12 0 chr3 140472939 140473019 -87051559 + MIR SINE MIR 114 194 -68 370 227 0 0 chr3 140473159 140473225 -87051353 - MER2 DNA MER2_type 0 345 280 2095 138 3 0 chr3 140473233 140473529 -87051049 + AluSx SINE Alu 1 297 -15 611 62 39 16 chr3 140473529 140473658 -87050920 + (TA)n Simple_repeat Simple_repeat 2 133 0 438 250 56 66 chr3 140473920 140474116 -87050462 - MIR SINE MIR 0 262 69 187 302 81 35 chr3 140474415 140474501 -87050077 - L2 LINE L2 -14 3258 3169 255 200 42 19 chr3 140474880 140474969 -87049609 + MIR SINE MIR 15 103 -105 814 87 87 7 chr3 140474980 140475011 -87049567 - L1MA8 LINE L1 0 6291 6264 324 0 0 0 chr3 140475011 140475047 -87049531 + (CA)n Simple_repeat Simple_repeat 2 37 0 814 87 87 7 chr3 140475047 140475153 -87049425 - L1MA8 LINE L1 -27 6264 6143 2278 106 0 0 chr3 140475738 140476030 -87048548 + AluSx SINE Alu 1 292 -20 287 265 0 24 chr3 140477038 140477121 -87047457 - MER5B DNA MER1_type -96 82 2 754 235 142 0 chr3 140477129 140477333 -87047245 + MIR SINE MIR 28 260 -2 830 267 134 16 chr3 140477764 140478311 -87046267 + L2 LINE L2 2711 3312 -1 282 68 23 0 chr3 140478437 140478481 -87046097 - MADE1 DNA Mariner -35 45 1 25 51 0 0 chr3 140479617 140479656 -87044922 + AT_rich Low_complexity Low_complexity 1 39 0 196 333 135 0 chr3 140480055 140480151 -87044427 + MIR SINE MIR 37 145 -117 236 158 0 0 chr3 140480561 140480599 -87043979 - MER33 DNA MER1_type -5 358 321 1365 140 0 61 chr3 140480600 140480774 -87043804 - AluJb SINE Alu -15 297 114 405 0 0 0 chr3 140480774 140480819 -87043759 + (TATG)n Simple_repeat Simple_repeat 2 46 0 2146 126 0 0 chr3 140480819 140481105 -87043473 - AluSg SINE Alu -24 286 1 1365 140 0 61 chr3 140481105 140481157 -87043421 - AluJb SINE Alu -196 116 84 1247 170 108 4 chr3 140481157 140481416 -87043162 - MER33 DNA MER1_type -38 286 1 2740 138 27 2 chr3 140481496 140481910 -87042668 + MSTB LTR MaLR 1 424 -2 374 220 55 0 chr3 140482229 140482320 -87042258 - MER5A DNA MER1_type -85 104 9 380 121 45 0 chr3 140482366 140482432 -87042146 - MER5A DNA MER1_type 0 189 121 536 158 0 50 chr3 140483608 140483709 -87040869 - AluJo SINE Alu -94 218 123 2079 131 6 16 chr3 140483738 140484052 -87040526 + AluSx SINE Alu 1 311 -1 419 146 13 166 chr3 140484075 140484226 -87040352 + L2 LINE L2 3179 3306 -7 489 254 41 0 chr3 140484531 140484653 -87039925 + MER20B DNA MER1_type 1 127 -656 230 136 153 34 chr3 140485576 140485635 -87038943 + MER20B DNA MER1_type 519 584 -199 507 230 58 49 chr3 140485635 140485861 -87038717 + MER20B DNA MER1_type 555 782 -1 447 252 42 0 chr3 140485904 140486023 -87038555 - MER94 DNA DNA 0 134 11 2047 176 23 30 chr3 140486739 140487166 -87037412 - L1MB5 LINE L1 0 6174 5751 600 292 185 3 chr3 140487657 140488030 -87036548 - L2 LINE L2 -1052 2262 1822 398 281 82 37 chr3 140488030 140488300 -87036278 - L1ME4a LINE L1 -251 5870 5589 527 285 69 41 chr3 140489548 140489794 -87034784 + MIR SINE MIR 8 260 -2 1389 238 40 55 chr3 140490241 140490662 -87033916 - MLT1J2 LTR MaLR -11 439 25 2844 75 11 0 chr3 140491031 140491391 -87033187 - THE1B LTR MaLR 0 364 1 319 361 57 6 chr3 140491622 140491780 -87032798 + MIR SINE MIR 18 183 -79 2150 101 49 0 chr3 140492655 140492942 -87031636 - AluSx SINE Alu -11 301 1 445 208 100 39 chr3 140493589 140493719 -87030859 + MER112 DNA MER1_type 17 154 -106 399 297 110 25 chr3 140494985 140495385 -87029193 - L2 LINE L2 -246 3067 2631 264 189 0 0 chr3 140497388 140497441 -87027137 - L1ME4a LINE L1 -7 6114 6062 22 35 0 0 chr3 140497454 140497483 -87027095 + AT_rich Low_complexity Low_complexity 1 29 0 360 285 109 18 chr3 140497504 140497725 -87026853 - L1ME4a LINE L1 -215 5906 5666 835 252 68 70 chr3 140497774 140498321 -87026257 + L1MC5 LINE L1 7371 7916 -45 4405 167 31 37 chr3 140498956 140499648 -87024930 - L1MB7 LINE L1 -9 6175 5481 1738 183 3 13 chr3 140499648 140499948 -87024630 - AluJo SINE Alu -15 297 1 4405 167 31 37 chr3 140499948 140499995 -87024583 - L1MB7 LINE L1 -703 5481 5435 1742 172 10 7 chr3 140499995 140500292 -87024286 - AluJo SINE Alu -14 298 1 4405 167 31 37 chr3 140500292 140500522 -87024056 - L1MB7 LINE L1 -749 5435 5209 3657 221 22 62 chr3 140500515 140501277 -87023301 - L1M4 LINE L1 -5612 930 139 * 248 51 0 26 chr3 140501277 140501316 -87023262 + (TTG)n Simple_repeat Simple_repeat 2 39 0 3657 221 22 62 chr3 140501316 140501353 -87023225 - L1M4 LINE L1 -6403 139 102 1769 152 16 35 chr3 140501353 140501669 -87022909 - AluJo SINE Alu 0 312 3 3657 221 22 62 chr3 140501669 140501821 -87022757 - L1M4 LINE L1 -6440 102 16 235 288 82 78 chr3 140501951 140502270 -87022308 + L2 LINE L2 1479 1798 -1516 501 344 61 4 chr3 140502286 140502516 -87022062 - MIR SINE MIR 0 262 20 207 260 60 0 chr3 140502826 140502876 -87021702 + L2 LINE L2 3236 3288 -25 296 307 29 14 chr3 140504118 140504258 -87020320 + MIR SINE MIR 92 233 -29 218 208 0 0 chr3 140504289 140504337 -87020241 + L2 LINE L2 3266 3313 0 383 302 47 0 chr3 140504656 140504785 -87019793 + MIR3 SINE MIR 20 154 -54 2092 98 11 4 chr3 140504849 140505125 -87019453 + AluSq SINE Alu 1 278 -35 213 39 0 0 chr3 140505125 140505151 -87019427 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 641 196 9 0 chr3 140505496 140505608 -87018970 - MER58B DNA MER1_type -6 335 223 954 128 14 0 chr3 140505610 140505751 -87018827 + FLAM_C SINE Alu 1 143 0 366 172 0 0 chr3 140505782 140505840 -87018738 + AluSp/q SINE Alu 240 297 -6 1004 214 36 13 chr3 140505853 140506077 -87018501 - MER58B DNA MER1_type -111 230 2 248 336 72 28 chr3 140508751 140508972 -87015606 - MIR SINE MIR -10 252 9 530 247 123 35 chr3 140510174 140510401 -87014177 + MIR SINE MIR 16 262 0 199 240 0 20 chr3 140510874 140510924 -87013654 + L2 LINE L2 3021 3069 -203 781 290 89 33 chr3 140510953 140511439 -87013139 - L2 LINE L2 0 3313 2794 185 288 45 15 chr3 140511479 140511545 -87013033 + L2 LINE L2 3159 3226 -87 2100 116 0 19 chr3 140511732 140512050 -87012528 + AluJb SINE Alu 1 312 0 340 309 74 0 chr3 140514470 140514637 -87009941 - MIR SINE MIR -64 144 6 345 303 8 16 chr3 140514816 140514938 -87009640 + CT-rich Low_complexity Low_complexity 2 122 0 193 234 15 33 chr3 140515660 140515725 -87008853 + MIR SINE MIR 87 141 -67 459 0 0 0 chr3 140516263 140516314 -87008264 + (CA)n Simple_repeat Simple_repeat 2 52 0 199 357 16 48 chr3 140516480 140516606 -87007972 + MIR SINE MIR 29 150 -58 892 254 45 15 chr3 140518515 140518779 -87005799 - L1ME1 LINE L1 -3 6163 5892 1033 120 0 0 chr3 140518787 140518929 -87005649 - AluJb SINE Alu -13 299 158 1895 202 44 16 chr3 140518931 140519362 -87005216 - L1ME1 LINE L1 -281 5885 5443 255 277 191 45 chr3 140519403 140519739 -87004839 + L1MC4a LINE L1 5791 6175 -1633 2267 68 0 13 chr3 140520455 140520763 -87003815 + AluY SINE Alu 1 304 -7 377 270 43 43 chr3 140520763 140520926 -87003652 - MIR SINE MIR -15 247 85 2465 156 111 59 chr3 140522467 140523006 -87001572 - MLT1F1 LTR MaLR 0 567 1 277 311 14 0 chr3 140523158 140523232 -87001346 + L2 LINE L2 3236 3310 -3 287 153 53 35 chr3 140523608 140523694 -87000884 - MLT1G1 LTR MaLR 0 590 459 383 354 50 11 chr3 140524265 140524446 -87000132 - MIR3 SINE MIR -1 207 20 189 264 0 56 chr3 140524581 140524653 -86999925 - L2 LINE L2 -514 2800 2733 2274 71 6 53 chr3 140524954 140525277 -86999301 - AluY SINE Alu -3 308 1 215 290 112 19 chr3 140526953 140527060 -86997518 + MIR SINE MIR 8 124 -138 830 178 0 8 chr3 140527061 140527190 -86997388 - FLAM_C SINE Alu -13 130 3 315 325 48 8 chr3 140527192 140527318 -86997260 + MIR SINE MIR 101 231 -31 201 158 0 0 chr3 140528070 140528108 -86996470 + (ATTG)n Simple_repeat Simple_repeat 2 39 0 180 0 0 0 chr3 140528643 140528663 -86995915 + (T)n Simple_repeat Simple_repeat 1 20 0 511 226 250 10 chr3 140532161 140532369 -86992209 - MIR SINE MIR 0 262 5 197 246 14 58 chr3 140534249 140534318 -86990260 - MIR SINE MIR -13 249 184 400 292 32 32 chr3 140537862 140538047 -86986531 - MIR3 SINE MIR -5 203 19 190 300 50 0 chr3 140540278 140540358 -86984220 - MIR SINE MIR -122 140 57 1465 261 199 22 chr3 140540824 140541934 -86982644 - L2 LINE L2 0 3313 2401 1537 172 32 0 chr3 140541934 140542213 -86982365 + AluJb SINE Alu 1 288 -24 696 70 0 26 chr3 140542213 140542328 -86982250 + (GGAA)n Simple_repeat Simple_repeat 3 114 0 1465 261 199 22 chr3 140542328 140542448 -86982130 - L2 LINE L2 -911 2402 1847 267 267 218 0 chr3 140542448 140542549 -86982029 - MIR SINE MIR -139 123 1 2212 84 0 0 chr3 140542655 140542959 -86981619 - AluSq SINE Alu 0 304 1 273 279 13 0 chr3 140542999 140543078 -86981500 - MER116 DNA Mariner 0 80 1 377 304 37 0 chr3 140543189 140543313 -86981265 - MIR SINE MIR -67 141 25 1841 142 0 40 chr3 140544263 140544588 -86979990 - AluJb SINE Alu 0 312 1 359 328 35 11 chr3 140544607 140544790 -86979788 - MIR SINE MIR -43 219 34 1807 109 57 21 chr3 140545063 140545346 -86979232 + AluSx SINE Alu 1 293 -19 381 262 170 14 chr3 140545606 140545747 -86978831 + MER5B DNA MER1_type 16 178 0 198 0 0 0 chr3 140546832 140546854 -86977724 + (CAGCC)n Simple_repeat Simple_repeat 4 25 0 754 160 58 146 chr3 140548668 140548943 -86975635 - ORSL DNA AcHobo -24 251 1 680 184 52 46 chr3 140549766 140549940 -86974638 + MER5B DNA MER1_type 1 175 -3 2429 65 0 0 chr3 140550567 140550873 -86973705 - AluSc SINE Alu -3 306 1 369 348 40 51 chr3 140550930 140551183 -86973395 - L1ME4a LINE L1 -4 6117 5868 207 69 0 0 chr3 140551228 140551257 -86973321 + (TG)n Simple_repeat Simple_repeat 2 30 0 357 341 69 32 chr3 140551708 140551925 -86972653 - MIR SINE MIR 0 262 38 315 0 0 0 chr3 140551980 140552015 -86972563 + (TA)n Simple_repeat Simple_repeat 1 35 0 297 207 154 85 chr3 140552050 140552238 -86972340 - L1MC4 LINE L1 -153 7889 7689 413 319 64 0 chr3 140552509 140552650 -86971928 + MIR3 SINE MIR 41 190 -18 341 282 155 0 chr3 140554871 140554974 -86969604 - L2 LINE L2 0 3272 3154 195 283 53 44 chr3 140555099 140555212 -86969366 - L2 LINE L2 -291 2981 2868 307 257 0 14 chr3 140555263 140555337 -86969241 + MER5A DNA MER1_type 117 189 0 319 305 288 13 chr3 140555377 140555852 -86968726 - L2 LINE L2 -456 2858 2253 746 137 40 2 chr3 140556484 140556745 -86967833 + AluJb SINE Alu 1 312 0 232 396 16 6 chr3 140556823 140556986 -86967592 + MIR SINE MIR 30 143 -65 1129 175 46 26 chr3 140557432 140557887 -86966691 - MLT1B LTR MaLR 0 467 1 642 224 34 20 chr3 140559005 140559129 -86965449 + MER3 DNA MER1_type 1 129 -33 1765 166 48 0 chr3 140559129 140559418 -86965160 - AluJo SINE Alu -4 308 6 642 224 34 20 chr3 140559418 140559440 -86965138 + MER3 DNA MER1_type 129 149 -60 1118 154 14 170 chr3 140559726 140559835 -86964743 - L1MC4 LINE L1 -1 8041 7917 2286 126 0 0 chr3 140559835 140560144 -86964434 - AluSx SINE Alu -3 309 1 1118 154 14 170 chr3 140560144 140560463 -86964115 - L1MC4 LINE L1 -125 7917 7680 213 217 17 50 chr3 140560581 140560641 -86963937 + L2 LINE L2 3215 3272 0 855 210 114 44 chr3 140560941 140561213 -86963365 - L2 LINE L2 0 3313 3023 1600 224 111 29 chr3 140561218 140561705 -86962873 - L1ME1 LINE L1 0 6166 5640 186 133 0 0 chr3 140561897 140561927 -86962651 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 2347 113 0 7 chr3 140562266 140562576 -86962002 - AluSx SINE Alu -4 308 1 1198 114 9 59 chr3 140564588 140564748 -86959830 + MER3 DNA MER1_type 1 149 -60 2412 160 13 26 chr3 140564748 140565203 -86959375 - L1MB7 LINE L1 -8 6176 5728 1198 114 9 59 chr3 140565203 140565262 -86959316 + MER3 DNA MER1_type 149 209 0 186 375 70 16 chr3 140566639 140566767 -86957811 + L2 LINE L2 2551 2685 -629 346 258 86 113 chr3 140566943 140567129 -86957449 - MER91A DNA MER1_type -13 183 3 251 200 62 46 chr3 140567283 140567348 -86957230 + MIR3 SINE MIR 135 200 -8 22 0 0 0 chr3 140569326 140569348 -86955230 + AT_rich Low_complexity Low_complexity 1 22 0 336 296 38 23 chr3 140571182 140571314 -86953264 - MIR SINE MIR -50 212 79 464 226 179 48 chr3 140571805 140571973 -86952605 - MIR SINE MIR -69 193 4 379 337 21 87 chr3 140573150 140573438 -86951140 - L2 LINE L2 -104 3168 2900 264 222 48 35 chr3 140573607 140573748 -86950830 + MER5A DNA MER1_type 10 189 0 898 291 26 4 chr3 140574003 140574237 -86950341 - MIR SINE MIR -4 258 20 446 317 226 26 chr3 140574249 140574855 -86949723 - L2 LINE L2 -838 2476 1750 2284 117 0 3 chr3 140574879 140575186 -86949392 + AluSx SINE Alu 1 306 -6 387 0 0 0 chr3 140575866 140575909 -86948669 + (CA)n Simple_repeat Simple_repeat 2 44 0 284 276 105 0 chr3 140576891 140576996 -86947582 - L2 LINE L2 -3 3269 3154 749 189 0 0 chr3 140577792 140577924 -86946654 - FLAM_A SINE Alu -1 132 1 237 223 0 0 chr3 140579393 140579487 -86945091 + (CA)n Simple_repeat Simple_repeat 2 95 0 334 252 54 0 chr3 140579635 140579746 -86944832 - MIR3 SINE MIR -22 186 70 1318 108 33 19 chr3 140581204 140581416 -86943162 + L1PA10 LINE L1 5954 6168 0 221 265 41 0 chr3 140581433 140581482 -86943096 + MIR3 SINE MIR 137 187 -21 1059 85 0 0 chr3 140582041 140582171 -86942407 + FLAM_C SINE Alu 1 130 -3 665 250 104 0 chr3 140582243 140582407 -86942171 - MER58A DNA MER1_type -41 183 3 267 103 0 0 chr3 140583344 140583383 -86941195 + (CA)n Simple_repeat Simple_repeat 2 40 0 991 258 27 79 chr3 140583582 140583746 -86940832 - L1MC4a LINE L1 -1789 6019 5848 1800 140 70 0 chr3 140583746 140584031 -86940547 - AluSx SINE Alu -7 305 1 991 258 27 79 chr3 140584031 140584347 -86940231 - L1MC4a LINE L1 -1960 5848 5564 492 304 63 16 chr3 140584559 140584750 -86939828 + MIR SINE MIR 11 210 -52 497 298 0 13 chr3 140586878 140587029 -86937549 + MER5B DNA MER1_type 1 149 -29 736 229 39 29 chr3 140587047 140587252 -86937326 - MIR SINE MIR -12 250 44 558 237 126 20 chr3 140587518 140587723 -86936855 - MIR SINE MIR 0 262 21 1252 188 0 5 chr3 140587818 140588031 -86936547 + AluJo SINE Alu 90 301 -11 440 150 0 35 chr3 140588031 140588144 -86936434 + GA-rich Low_complexity Low_complexity 2 110 0 1478 148 33 3 chr3 140588314 140588605 -86935973 - L1 LINE L1 -1603 5185 4883 495 0 0 0 chr3 140588605 140588660 -86935918 + (TA)n Simple_repeat Simple_repeat 1 55 0 1478 148 33 3 chr3 140588660 140588672 -86935906 - L1 LINE L1 -1905 4883 4873 * 7398 169 124 108 chr3 140588668 140591091 -86933487 - L1 LINE L1 -4219 2570 107 1976 172 13 0 chr3 140591186 140591488 -86933090 - AluJo SINE Alu -6 306 1 1740 258 175 30 chr3 140591879 140591965 -86932613 - L2 LINE L2 -86 3227 3155 2349 114 0 0 chr3 140591965 140592273 -86932305 + AluSq SINE Alu 1 308 -5 1740 258 175 30 chr3 140592273 140593264 -86931314 - L2 LINE L2 -158 3155 1969 2204 178 28 8 chr3 140594111 140594499 -86930079 - MSTD LTR MaLR 0 396 1 27 0 0 0 chr3 140595181 140595208 -86929370 + AT_rich Low_complexity Low_complexity 1 27 0 2071 142 0 16 chr3 140595326 140595629 -86928949 + AluSx SINE Alu 1 298 -14 861 38 0 0 chr3 140595638 140595743 -86928835 + (GGAA)n Simple_repeat Simple_repeat 4 108 0 198 0 0 0 chr3 140596545 140596567 -86928011 + (A)n Simple_repeat Simple_repeat 1 22 0 1813 206 68 25 chr3 140596781 140597223 -86927355 - LTR40b LTR ERVL 0 462 2 253 389 46 8 chr3 140597248 140597379 -86927199 - MIR SINE MIR -6 256 121 357 252 173 7 chr3 140597461 140597600 -86926978 - MIR SINE MIR -3 259 98 1659 166 4 4 chr3 140597648 140597926 -86926652 - AluJb SINE Alu -13 299 22 664 235 137 46 chr3 140597969 140598275 -86926303 + L3 LINE CR1 1101 1434 -143 340 271 125 28 chr3 140599963 140600107 -86924471 - MIR SINE MIR -74 188 31 430 227 42 34 chr3 140600375 140600494 -86924084 + L2 LINE L2 3193 3312 -1 325 318 61 46 chr3 140601165 140601263 -86923315 + L1ME4a LINE L1 5591 5686 -435 2139 128 0 0 chr3 140601263 140601572 -86923006 + AluSx SINE Alu 1 309 0 325 318 61 46 chr3 140601572 140601733 -86922845 + L1ME4a LINE L1 5686 5855 -266 24 32 0 0 chr3 140601754 140601785 -86922793 + AT_rich Low_complexity Low_complexity 1 31 0 269 256 39 0 chr3 140602383 140602461 -86922117 - MER94 DNA DNA -53 81 1 2384 96 0 0 chr3 140602548 140602840 -86921738 + AluSx SINE Alu 3 294 -18 2391 99 0 3 chr3 140606802 140607114 -86917464 - AluSq SINE Alu -2 311 1 285 271 59 12 chr3 140607195 140607280 -86917298 + MIR3 SINE MIR 85 173 -35 631 304 50 54 chr3 140607373 140607633 -86916945 + MIR SINE MIR 1 259 -3 201 146 24 24 chr3 140607661 140607702 -86916876 + MIR SINE MIR 99 139 -69 225 231 0 39 chr3 140607993 140608045 -86916533 + MIR3 SINE MIR 145 194 -14 2143 110 3 20 chr3 140608912 140609212 -86915366 - AluSq SINE Alu -18 295 1 299 251 96 90 chr3 140609262 140609394 -86915184 + MIR SINE MIR 28 112 -96 2067 90 3 14 chr3 140609394 140609704 -86914874 + AluSx SINE Alu 1 307 0 299 251 96 90 chr3 140609704 140609737 -86914841 + MIR SINE MIR 112 143 -65 378 239 45 0 chr3 140610059 140610147 -86914431 + MIR3 SINE MIR 109 200 -8 26 0 0 0 chr3 140610256 140610282 -86914296 + AT_rich Low_complexity Low_complexity 1 26 0 499 294 4 93 chr3 140610412 140610660 -86913918 - MIR SINE MIR -12 250 25 275 250 50 25 chr3 140612298 140612378 -86912200 + MIR SINE MIR 181 262 0 295 284 60 60 chr3 140612847 140612963 -86911615 - MIR SINE MIR -86 122 6 220 245 38 0 chr3 140614129 140614182 -86910396 - MIR SINE MIR -99 163 109 4513 146 9 14 chr3 140614190 140614928 -86909650 + L1PA16 LINE L1 5419 6153 -13 2067 162 128 17 chr3 140615060 140615529 -86909049 + Charlie1b DNA MER1_type 3 523 0 291 273 112 13 chr3 140618095 140618219 -86906359 + MIR SINE MIR 29 167 -41 436 292 112 6 chr3 140618526 140618687 -86905891 - MIR SINE MIR -16 246 69 250 219 96 55 chr3 140618960 140619033 -86905545 + L2 LINE L2 3238 3313 0 253 227 27 45 chr3 140619112 140619222 -86905356 + L1MC5 LINE L1 7803 7910 -51 25 0 0 0 chr3 140619226 140619251 -86905327 + AT_rich Low_complexity Low_complexity 1 25 0 553 306 65 31 chr3 140619322 140619613 -86904965 - L1ME LINE L1 -348 5773 5473 1003 244 4 63 chr3 140619971 140620241 -86904337 + MIR SINE MIR 9 262 0 315 269 0 90 chr3 140620785 140620919 -86903659 + LTR67 LTR ERVL 428 549 -8 353 311 72 0 chr3 140620930 140621097 -86903481 + L1ME LINE L1 5625 5803 -318 911 216 87 26 chr3 140621323 140621554 -86903024 + MIR SINE MIR 18 262 0 343 306 94 19 chr3 140621736 140621896 -86902682 + MIR3 SINE MIR 30 201 -7 1765 131 31 22 chr3 140623719 140624039 -86900539 + L1MB7 LINE L1 5808 6130 -54 340 92 105 26 chr3 140624499 140624575 -86900003 - L1MB5 LINE L1 -11 6163 6082 454 180 102 155 chr3 140626034 140626279 -86898299 + MLT1L LTR MaLR 223 454 -161 231 170 0 0 chr3 140626627 140626674 -86897904 + CT-rich Low_complexity Low_complexity 2 48 0 450 310 78 35 chr3 140626760 140626992 -86897586 + MER115 DNA AcHobo 6 247 -446 1734 46 18 0 chr3 140627747 140627965 -86896613 + L1PA3 LINE L1 5934 6155 0 1987 77 55 26 chr3 140629563 140629873 -86894705 - L1MA1 LINE L1 -6 6296 5978 2298 78 0 3 chr3 140630042 140630337 -86894241 - AluSx SINE Alu -18 294 1 1104 136 0 88 chr3 140630432 140630660 -86893918 - MER3 DNA MER1_type -1 208 1 237 292 67 42 chr3 140631667 140631787 -86892791 - MER5B DNA MER1_type -5 173 51 471 243 178 13 chr3 140631791 140631943 -86892635 - MER5A DNA MER1_type 0 189 13 1166 185 101 13 chr3 140631961 140632259 -86892319 + MER33 DNA MER1_type 1 324 0 491 123 0 0 chr3 140632355 140632428 -86892150 - AluJ/FRAM SINE Alu -8 304 232 225 298 48 0 chr3 140633733 140633817 -86890761 - L2 LINE L2 -101 3212 3125 241 196 0 0 chr3 140634754 140634800 -86889778 - LTR16A1 LTR ERVL 0 457 412 286 197 141 0 chr3 140634825 140634896 -86889682 - LTR16A1 LTR ERVL -376 81 1 210 333 35 23 chr3 140634935 140635022 -86889556 - MIR SINE MIR -78 130 43 201 308 44 22 chr3 140635364 140635455 -86889123 + MIR3 SINE MIR 110 202 -6 222 37 0 0 chr3 140637695 140637722 -86886856 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1607 173 11 11 chr3 140637724 140638007 -86886571 - AluJo SINE Alu -29 283 1 360 262 141 102 chr3 140638501 140638883 -86885695 + MLT1K LTR MaLR 187 583 -5 392 298 50 61 chr3 140638901 140639046 -86885532 + MIR SINE MIR 26 171 -91 264 30 0 0 chr3 140639046 140639079 -86885499 + (TATG)n Simple_repeat Simple_repeat 1 33 0 2137 89 4 0 chr3 140639079 140639360 -86885218 - AluSp SINE Alu -31 282 1 392 298 50 61 chr3 140639360 140639394 -86885184 + MIR SINE MIR 169 204 -58 2159 97 0 3 chr3 140640626 140640916 -86883662 + AluSq SINE Alu 1 289 -24 523 246 88 44 chr3 140640925 140641109 -86883469 - HAL1 LINE L1 0 2507 2332 1851 148 3 10 chr3 140641109 140641414 -86883164 - AluJb SINE Alu -9 303 1 523 246 88 44 chr3 140641414 140641447 -86883131 - HAL1 LINE L1 -175 2332 2302 1230 165 56 127 chr3 140641447 140641840 -86882738 + MLT1A1 LTR MaLR 1 365 0 523 246 88 44 chr3 140641840 140641918 -86882660 - HAL1 LINE L1 -205 2302 2198 2970 272 118 65 chr3 140641975 140643725 -86880853 - HAL1 LINE L1 -385 2122 280 3501 129 51 99 chr3 140643926 140644132 -86880446 + L1MB3 LINE L1 5469 5683 -500 2191 119 3 0 chr3 140644132 140644443 -86880135 + AluSx SINE Alu 1 312 0 3501 129 51 99 chr3 140644443 140644985 -86879593 + L1MB3 LINE L1 5683 6181 -2 303 293 10 10 chr3 140644981 140645080 -86879498 - L1M4 LINE L1 -1286 4860 4762 * 2090 127 0 0 chr3 140646207 140646515 -86878063 + AluSx SINE Alu 1 308 -4 486 315 31 86 chr3 140648421 140648713 -86875865 + L2 LINE L2 2994 3269 -3 23 33 0 0 chr3 140648779 140648809 -86875769 + AT_rich Low_complexity Low_complexity 1 30 0 1971 121 0 41 chr3 140648911 140649225 -86875353 + AluSq SINE Alu 1 301 -12 762 308 82 59 chr3 140649350 140649872 -86874706 + L3 LINE CR1 976 1509 -68 345 311 131 19 chr3 140650245 140650505 -86874073 - L1M4 LINE L1 -2851 3295 3007 1930 161 49 3 chr3 140650512 140650861 -86873717 - MER47A DNA MER2_type 0 366 2 313 308 42 8 chr3 140650965 140651085 -86873493 + L1ME4a LINE L1 4412 4535 -1611 489 274 203 26 chr3 140651154 140651779 -86872799 + L1ME4a LINE L1 4791 5551 -771 228 232 192 20 chr3 140651850 140651949 -86872629 + L1ME4a LINE L1 5573 5688 -433 292 224 168 49 chr3 140652156 140652299 -86872279 + L1ME4a LINE L1 5962 6121 0 335 315 28 0 chr3 140653309 140653417 -86871161 - MIR SINE MIR -65 197 87 237 365 35 0 chr3 140653804 140653889 -86870689 - L2 LINE L2 -48 3224 3137 1557 155 30 33 chr3 140653912 140654215 -86870363 - AluJo SINE Alu -10 302 1 233 292 0 0 chr3 140654760 140654808 -86869770 - L2 LINE L2 -19 3294 3247 517 254 99 35 chr3 140655261 140655544 -86869034 + L1ME4a LINE L1 5598 5898 -223 307 271 86 43 chr3 140655638 140655778 -86868800 - MIR SINE MIR -108 154 9 204 273 317 25 chr3 140656061 140656222 -86868356 - MIR SINE MIR -34 228 21 404 215 41 103 chr3 140657000 140657195 -86867383 + MER106A DNA MER1_type 2 184 -52 1546 65 0 15 chr3 140657216 140657416 -86867162 + AluY SINE Alu 106 302 -9 2175 117 0 0 chr3 140659034 140659342 -86865236 + AluSx SINE Alu 1 308 -4 433 262 19 9 chr3 140659349 140659456 -86865122 - MIR3 SINE MIR -3 205 98 368 311 83 62 chr3 140659645 140659886 -86864692 - L2 LINE L2 -6 3266 3021 227 344 31 23 chr3 140660539 140660667 -86863911 - L3 LINE CR1 -1 1576 1448 216 254 17 17 chr3 140660681 140660740 -86863838 + L2 LINE L2 3254 3312 -1 292 310 117 0 chr3 140660926 140661071 -86863507 - MIR3 SINE MIR -10 198 37 699 286 108 77 chr3 140661772 140662412 -86862166 - L1ME4a LINE L1 -142 5979 5320 255 274 14 0 chr3 140662835 140662908 -86861670 - Charlie8 DNA MER1_type -6 2411 2338 272 270 153 12 chr3 140663090 140663253 -86861325 - Charlie8 DNA MER1_type -2214 203 18 381 254 29 51 chr3 140663253 140663391 -86861187 - HAL1 LINE L1 -125 2382 2248 1431 212 13 56 chr3 140663720 140664093 -86860485 - MLT1A1 LTR MaLR 0 365 9 5105 145 23 19 chr3 140666857 140668584 -86855994 - L1MA5A LINE L1 -1 6299 4625 21 0 0 0 chr3 140668868 140668889 -86855689 + AT_rich Low_complexity Low_complexity 1 21 0 497 171 18 0 chr3 140669369 140669480 -86855098 + GA-rich Low_complexity Low_complexity 1 113 0 645 149 0 0 chr3 140669503 140669597 -86854981 + AluJ/FLAM SINE Alu 2 95 -217 529 221 0 0 chr3 140669613 140669717 -86854861 - FRAM SINE Alu -7 169 66 682 251 148 9 chr3 140670969 140671192 -86853386 + MIR SINE MIR 5 258 -4 267 267 130 50 chr3 140671297 140671501 -86853077 - MIR SINE MIR -46 216 5 186 287 46 46 chr3 140672116 140672224 -86852354 + L3b LINE CR1 1300 1407 -176 404 283 201 14 chr3 140672425 140672650 -86851928 + MIR SINE MIR 3 262 0 312 232 239 7 chr3 140673738 140673880 -86850698 - MER5A DNA MER1_type -6 183 9 182 317 0 0 chr3 140674153 140674194 -86850384 + MER5A DNA MER1_type 149 189 0 194 294 31 92 chr3 140674780 140674915 -86849663 - MIR SINE MIR -56 206 81 372 206 228 0 chr3 140674915 140675007 -86849571 + MER81 DNA DNA 2 114 0 194 294 31 92 chr3 140675007 140675034 -86849544 - MIR SINE MIR -181 81 54 1015 245 116 5 chr3 140675050 140675452 -86849126 - L1ME3A LINE L1 -82 6080 5612 740 197 0 8 chr3 140677192 140677314 -86847264 + FLAM_A SINE Alu 1 121 -12 246 62 0 0 chr3 140677316 140677348 -86847230 + (CA)n Simple_repeat Simple_repeat 1 32 0 1976 165 0 3 chr3 140677751 140678060 -86846518 + AluJb SINE Alu 1 308 -4 1850 150 48 3 chr3 140678086 140678379 -86846199 + AluJb SINE Alu 1 306 -6 260 259 35 35 chr3 140678944 140679004 -86845574 - MIR3 SINE MIR -23 185 123 2345 89 0 19 chr3 140679004 140679318 -86845260 + AluY SINE Alu 1 308 -3 260 259 35 35 chr3 140679318 140679342 -86845236 - MIR3 SINE MIR -84 124 101 2337 105 7 0 chr3 140679764 140680060 -86844518 - AluSq SINE Alu -15 298 1 738 233 80 0 chr3 140680097 140680260 -86844318 - MER45A DNA AcHobo 0 178 3 859 246 72 17 chr3 140680562 140680798 -86843780 + MIR SINE MIR 3 251 -11 245 147 206 0 chr3 140680860 140680928 -86843650 - MIR SINE MIR -116 146 65 329 237 61 9 chr3 140683433 140683547 -86841031 - L1ME4a LINE L1 -46 6075 5956 579 219 34 79 chr3 140684788 140684966 -86839612 + MIR SINE MIR 74 243 -19 796 257 84 5 chr3 140685002 140685204 -86839374 - MIR SINE MIR -29 233 16 2557 63 3 0 chr3 140685328 140685627 -86838951 - AluY SINE Alu -11 300 1 801 144 0 0 chr3 140685664 140685775 -86838803 - AluSg/x SINE Alu -8 301 191 1581 172 4 29 chr3 140686809 140687088 -86837490 - AluJo SINE Alu -11 301 30 24 32 0 0 chr3 140687702 140687733 -86836845 + AT_rich Low_complexity Low_complexity 1 31 0 301 297 0 45 chr3 140688022 140688133 -86836445 - MER81 DNA DNA -2 112 7 312 172 16 0 chr3 140688807 140688871 -86835707 - MIR SINE MIR -78 130 66 600 147 92 0 chr3 140690220 140690329 -86834249 - MIR3 SINE MIR -8 200 82 23 0 0 0 chr3 140691035 140691058 -86833520 + AT_rich Low_complexity Low_complexity 1 23 0 3447 112 40 25 chr3 140692281 140692800 -86831778 + MER1A DNA MER1_type 1 527 0 240 35 0 0 chr3 140692857 140692886 -86831692 + (CAT)n Simple_repeat Simple_repeat 1 29 0 328 244 53 12 chr3 140693711 140693848 -86830730 + MLT1J2 LTR MaLR 54 192 -217 510 246 0 0 chr3 140693895 140694009 -86830569 + MLT1I LTR MaLR 288 401 -8 240 222 0 0 chr3 140694024 140694036 -86830542 + MER3 DNA MER1_type 37 48 -161 664 186 16 0 chr3 140694036 140694165 -86830413 - MER3 DNA MER1_type -1 208 78 821 135 0 53 chr3 140694343 140694476 -86830102 + FLAM_C SINE Alu 1 126 -7 2397 80 0 19 chr3 140694517 140694831 -86829747 + AluY SINE Alu 1 308 -3 2355 104 7 0 chr3 140695278 140695576 -86829002 - AluSq SINE Alu -13 300 1 738 233 80 0 chr3 140695613 140695776 -86828802 - MER45A DNA AcHobo 0 178 3 871 241 72 17 chr3 140696078 140696314 -86828264 + MIR SINE MIR 3 251 -11 245 147 206 0 chr3 140696376 140696444 -86828134 - MIR SINE MIR -116 146 65 303 246 61 9 chr3 140698971 140699085 -86825493 - L1ME4a LINE L1 -46 6075 5956 579 219 34 79 chr3 140700326 140700504 -86824074 + MIR SINE MIR 74 243 -19 796 257 84 5 chr3 140700540 140700742 -86823836 - MIR SINE MIR -29 233 16 2544 67 3 0 chr3 140700866 140701165 -86823413 - AluY SINE Alu -11 300 1 769 153 0 0 chr3 140701202 140701313 -86823265 - AluSg/x SINE Alu -8 302 192 1564 173 4 29 chr3 140702347 140702624 -86821954 - AluJo SINE Alu -13 299 30 24 32 0 0 chr3 140703238 140703269 -86821309 + AT_rich Low_complexity Low_complexity 1 31 0 263 279 18 63 chr3 140703558 140703669 -86820909 - MER81 DNA DNA -2 112 7 312 172 16 0 chr3 140704341 140704405 -86820173 - MIR SINE MIR -78 130 66 547 140 112 0 chr3 140705754 140705861 -86818717 - MIR3 SINE MIR -8 200 82 22 0 0 0 chr3 140706554 140706576 -86818002 + AT_rich Low_complexity Low_complexity 1 22 0 267 296 99 42 chr3 140708433 140708575 -86816003 + MIR SINE MIR 56 205 -57 195 221 39 65 chr3 140708964 140709041 -86815537 - MIR SINE MIR -113 149 75 2023 144 155 0 chr3 140709742 140710109 -86814469 - MSTB LTR MaLR -2 424 1 230 290 47 18 chr3 140710169 140710338 -86814240 + (TATATG)n Simple_repeat Simple_repeat 4 177 0 545 176 120 14 chr3 140710515 140710657 -86813921 - L1MB8 LINE L1 -4 6174 6018 1961 180 0 0 chr3 140710723 140711028 -86813550 + AluJb SINE Alu 1 305 -7 2256 112 0 3 chr3 140711038 140711343 -86813235 + AluSx SINE Alu 1 304 -8 617 132 143 0 chr3 140711436 140711527 -86813051 - AluSg SINE Alu -205 105 2 1881 131 3 32 chr3 140711562 140711844 -86812734 + AluJo SINE Alu 5 278 -34 937 194 12 12 chr3 140711883 140712043 -86812535 + FRAM SINE Alu 2 161 -5 196 149 43 0 chr3 140714191 140714238 -86810340 + (TG)n Simple_repeat Simple_repeat 2 50 0 3630 112 40 25 chr3 140714629 140715148 -86809430 + MER1A DNA MER1_type 1 527 0 294 29 0 0 chr3 140715205 140715240 -86809338 + (CAT)n Simple_repeat Simple_repeat 1 35 0 343 244 53 12 chr3 140716065 140716202 -86808376 + MLT1J2 LTR MaLR 54 192 -217 547 246 0 0 chr3 140716249 140716363 -86808215 + MLT1I LTR MaLR 288 401 -8 251 222 0 0 chr3 140716378 140716390 -86808188 + MER3 DNA MER1_type 37 48 -161 713 186 16 0 chr3 140716390 140716519 -86808059 - MER3 DNA MER1_type -1 208 78 848 135 0 53 chr3 140716697 140716830 -86807748 + FLAM_C SINE Alu 1 126 -7 2609 41 0 0 chr3 140716871 140717166 -86807412 + AluY SINE Alu 1 295 -16 295 275 12 0 chr3 140718147 140718227 -86806351 + MIR SINE MIR 114 194 -68 374 227 0 0 chr3 140718367 140718433 -86806145 - MER2 DNA MER2_type 0 345 280 2086 140 3 0 chr3 140718441 140718741 -86805837 + AluSx SINE Alu 1 301 -11 601 58 47 47 chr3 140718741 140719038 -86805540 + (TA)n Simple_repeat Simple_repeat 1 297 0 496 99 70 18 chr3 140719041 140719212 -86805366 + (TATAA)n Simple_repeat Simple_repeat 1 180 0 461 106 43 19 chr3 140719223 140719384 -86805194 + (TATAA)n Simple_repeat Simple_repeat 5 169 0 1114 94 0 31 chr3 140719493 140719652 -86804926 - MER2 DNA MER2_type -172 173 20 494 47 0 0 chr3 140720273 140720337 -86804241 - L1PA4 LINE L1 -171 5984 5921 469 67 0 0 chr3 140720339 140720399 -86804179 + L1PA3 LINE L1 6093 6152 -3 246 274 88 60 chr3 140720405 140720620 -86803958 + HAL1 LINE L1 94 314 -2193 1492 158 19 90 chr3 140720852 140721175 -86803403 + AluJb SINE Alu 1 300 -12 2312 62 41 3 chr3 140721422 140721712 -86802866 - AluY SINE Alu -10 301 1 350 212 212 0 chr3 140721867 140721966 -86802612 + HAL1 LINE L1 18 137 -2370 1147 146 0 0 chr3 140722082 140722246 -86802332 + FRAM SINE Alu 1 164 -12 356 292 72 47 chr3 140722297 140722533 -86802045 + HAL1 LINE L1 377 618 -1889 540 153 59 0 chr3 140722540 140722625 -86801953 - MER45A DNA AcHobo 0 178 89 234 0 0 0 chr3 140722755 140722781 -86801797 + (T)n Simple_repeat Simple_repeat 1 26 0 489 195 0 0 chr3 140722782 140722869 -86801709 - MER45A DNA AcHobo -91 87 1 245 302 42 10 chr3 140722887 140722983 -86801595 + HAL1 LINE L1 637 735 -1772 867 142 60 0 chr3 140723266 140723400 -86801178 + FRAM SINE Alu 19 160 -16 1910 134 29 0 chr3 140723403 140723701 -86800877 + AluSx SINE Alu 1 306 0 858 178 57 6 chr3 140723979 140724136 -86800442 - FRAM SINE Alu -9 167 3 2117 130 19 0 chr3 140724141 140724449 -86800129 - LTR57 LTR ERVL -7 404 91 1699 144 15 4 chr3 140724852 140725115 -86799463 + AluJb SINE Alu 25 290 -22 2132 157 34 35 chr3 140725251 140725802 -86798776 - MLT2A2 LTR ERVL 0 554 1 846 256 160 11 chr3 140725959 140726322 -86798256 + HAL1 LINE L1 742 1158 -1349 1923 163 0 10 chr3 140726322 140726616 -86797962 + AluJb SINE Alu 1 291 -21 451 213 8 8 chr3 140726616 140726743 -86797835 + GA-rich Low_complexity Low_complexity 1 127 0 358 240 144 24 chr3 140726755 140726880 -86797698 + HAL1 LINE L1 1141 1280 -1227 716 222 66 17 chr3 140726914 140727211 -86797367 + Charlie1 DNA MER1_type 1 2722 -39 1653 158 0 0 chr3 140727519 140727772 -86796806 - AluJb SINE Alu -59 253 1 2165 139 3 0 chr3 140727978 140728287 -86796291 + AluJo SINE Alu 3 312 0 850 172 68 25 chr3 140728592 140728755 -86795823 + FRAM SINE Alu 1 169 -7 353 222 40 71 chr3 140729046 140729172 -86795406 + LTR40b LTR ERVL 135 256 -206 890 255 70 70 chr3 140729279 140729478 -86795100 - L1ME4a LINE L1 -286 5835 5637 812 176 7 37 chr3 140729478 140729614 -86794964 + FLAM_A SINE Alu 1 132 -1 890 255 70 70 chr3 140729614 140729884 -86794694 - L1ME4a LINE L1 -483 5638 5366 1685 174 38 14 chr3 140730204 140730492 -86794086 - AluJb SINE Alu -17 295 1 279 303 176 36 chr3 140730895 140731116 -86793462 + LTR67 LTR ERVL 9 260 -297 393 282 51 8 chr3 140731249 140731366 -86793212 + LTR67 LTR ERVL 428 549 -8 2161 242 92 5 chr3 140732180 140732977 -86791601 - L1ME3A LINE L1 -208 5962 5111 573 254 98 34 chr3 140733168 140733463 -86791115 + L1MEd LINE L1 561 874 -5245 * 2352 161 20 29 chr3 140733461 140733907 -86790671 + L1MC2 LINE L1 5664 6105 -239 1918 137 54 48 chr3 140734135 140734380 -86790198 + THE1C LTR MaLR 1 250 -125 2398 116 65 6 chr3 140734380 140734734 -86789844 - THE1C LTR MaLR 0 375 1 1918 137 54 48 chr3 140734734 140734861 -86789717 + THE1C LTR MaLR 250 375 0 10000 124 6 34 chr3 140734863 140736440 -86788138 + THE1C-int LTR MaLR 3 1534 -46 460 267 91 98 chr3 140736440 140736712 -86787866 - L2 LINE L2 -363 2951 2680 2303 147 31 0 chr3 140736712 140737039 -86787539 + MER1B DNA MER1_type 1 337 0 460 267 91 98 chr3 140737039 140737084 -86787494 - L2 LINE L2 -634 2680 2636 2226 118 0 0 chr3 140737334 140737630 -86786948 + AluSq SINE Alu 1 296 -17 589 96 24 0 chr3 140737737 140737819 -86786759 + LTR8A LTR ERV1 1 84 -643 551 176 176 36 chr3 140737819 140737984 -86786594 - MER4C LTR ERV1 0 465 278 2235 80 31 0 chr3 140737984 140738270 -86786308 - AluSg SINE Alu -15 295 1 2171 105 53 87 chr3 140738294 140738731 -86785847 - MER4A LTR ERV1 -242 422 1 * 2399 126 78 50 chr3 140738731 140739201 -86785377 + LTR8A LTR ERV1 81 563 -164 704 128 122 67 chr3 140739264 140739428 -86785150 + LTR8A LTR ERV1 555 727 0 893 271 195 19 chr3 140739430 140739466 -86785112 + L2 LINE L2 2198 2226 -1088 2064 123 131 33 chr3 140739466 140739864 -86784714 + LTR23 LTR ERV1 1 437 0 893 271 195 19 chr3 140739864 140740196 -86784382 + L2 LINE L2 2226 2631 -683 1722 157 93 13 chr3 140740241 140740553 -86784025 + MER1B DNA MER1_type 1 337 0 382 308 87 93 chr3 140741474 140742229 -86782349 - L1M2 LINE L1 -5419 1430 709 672 217 36 0 chr3 140742491 140742629 -86781949 + MIR3 SINE MIR 51 193 -15 253 148 33 33 chr3 140742722 140742783 -86781795 - L1MC5 LINE L1 -37 7924 7864 249 239 128 37 chr3 140742784 140742893 -86781685 - L1MC4a LINE L1 -1634 6174 6056 332 287 32 0 chr3 140743093 140743187 -86781391 - MIR SINE MIR -79 129 33 23 0 0 0 chr3 140743281 140743304 -86781274 + AT_rich Low_complexity Low_complexity 1 23 0 429 203 121 99 chr3 140744964 140745196 -86779382 - MLT1K LTR MaLR -1 587 351 1922 61 141 8 chr3 140745571 140745833 -86778745 + AluY SINE Alu 3 299 -2 1814 162 3 20 chr3 140745882 140746185 -86778393 - AluJo SINE Alu -14 298 1 1242 177 9 0 chr3 140746194 140746409 -86778169 - AluJb SINE Alu -11 301 85 612 140 0 0 chr3 140746490 140746583 -86777995 - Alu SINE Alu 0 311 219 235 346 65 0 chr3 140746696 140746803 -86777775 + MIR3 SINE MIR 74 187 -21 1745 144 13 70 chr3 140747074 140747387 -86777191 + AluJo SINE Alu 1 295 -17 1957 160 0 0 chr3 140748116 140748409 -86776169 + AluJo SINE Alu 1 293 -19 1749 145 114 23 chr3 140748433 140748820 -86775758 + L1MB7 LINE L1 5763 6184 0 2648 43 0 0 chr3 140749044 140749347 -86775231 - AluY SINE Alu -8 303 1 22 0 0 0 chr3 140751108 140751130 -86773448 + AT_rich Low_complexity Low_complexity 1 22 0 759 133 144 61 chr3 140751145 140751268 -86773310 + MER3 DNA MER1_type 2 146 -63 1795 148 10 42 chr3 140751268 140751579 -86772999 + AluJo SINE Alu 1 301 -11 759 133 144 61 chr3 140751579 140751636 -86772942 + MER3 DNA MER1_type 146 197 -12 24 32 0 0 chr3 140752003 140752034 -86772544 + AT_rich Low_complexity Low_complexity 1 31 0 245 327 92 7 chr3 140752601 140752744 -86771834 + MIR3 SINE MIR 43 197 -11 361 165 223 0 chr3 140753363 140753466 -86771112 - L1ME4a LINE L1 -18 6103 5978 1925 147 3 10 chr3 140754155 140754455 -86770123 - AluJo SINE Alu -12 300 3 314 289 34 2 chr3 140754591 140754738 -86769840 + MER20B DNA MER1_type 34 211 -572 2229 188 89 63 chr3 140754840 140755446 -86769132 - MLT1E3 LTR MaLR -1 623 2 348 24 0 0 chr3 140755722 140755763 -86768815 + (TG)n Simple_repeat Simple_repeat 2 42 0 773 146 168 22 chr3 140756327 140756553 -86768025 + MER20B DNA MER1_type 525 783 0 2379 97 0 3 chr3 140756638 140756948 -86767630 - AluSx SINE Alu -3 309 1 1868 139 14 3 chr3 140756992 140757280 -86767298 + AluJb SINE Alu 1 291 -21 224 305 106 13 chr3 140757703 140757837 -86766741 + MIR SINE MIR 45 188 -69 190 191 75 138 chr3 140759251 140759345 -86765233 + MIR SINE MIR 124 211 -51 278 150 200 0 chr3 140759785 140759845 -86764733 - AluJ/FRAM SINE Alu -1 301 230 1498 97 0 0 chr3 140759845 140760031 -86764547 - AluSx SINE Alu -126 186 1 1896 152 7 0 chr3 140760061 140760357 -86764221 + AluJo SINE Alu 1 298 -14 217 313 25 12 chr3 140760628 140760708 -86763870 - MIR SINE MIR -147 115 35 2110 177 34 8 chr3 140760991 140761347 -86763231 - MLT1A1 LTR MaLR 0 365 1 215 276 89 65 chr3 140761490 140761613 -86762965 - L2 LINE L2 -1 3271 3146 318 247 82 0 chr3 140761681 140761766 -86762812 + L2 LINE L2 3128 3219 -53 255 201 55 81 chr3 140762798 140762858 -86761720 - MIR SINE MIR -45 163 103 790 88 103 7 chr3 140762858 140762964 -86761614 + L1MA8 LINE L1 6143 6266 -25 216 0 0 0 chr3 140762964 140762988 -86761590 + (TG)n Simple_repeat Simple_repeat 2 25 0 790 88 103 7 chr3 140762988 140763017 -86761561 + L1MA8 LINE L1 6266 6291 0 255 201 55 81 chr3 140763017 140763117 -86761461 - MIR SINE MIR -105 103 15 187 302 81 35 chr3 140763496 140763582 -86760996 + L2 LINE L2 3169 3258 -14 572 231 40 65 chr3 140763881 140764080 -86760498 + MIR SINE MIR 69 262 0 215 309 0 25 chr3 140864813 140864894 -86659684 + CT-rich Low_complexity Low_complexity 3 81 0 1235 241 103 28 chr3 140866569 140867192 -86657386 + L1M4c LINE L1 2 1941 -5089 760 217 50 74 chr3 140867174 140867570 -86657008 + L1M4c LINE L1 2932 3333 -3773 * 436 328 79 5 chr3 140868367 140868556 -86656022 + MIR SINE MIR 17 219 -43 322 360 27 0 chr3 140868606 140868717 -86655861 + L2 LINE L2 3137 3250 -22 307 279 163 12 chr3 140869016 140869188 -86655390 - MIR SINE MIR -26 236 39 386 356 0 15 chr3 140870127 140870262 -86654316 + MIR SINE MIR 20 152 -56 699 329 20 12 chr3 140870278 140870527 -86654051 - MIR SINE MIR -10 252 2 1887 248 33 33 chr3 140871996 140872577 -86652001 - L1ME1 LINE L1 -271 5895 5315 1172 182 86 0 chr3 140872621 140872841 -86651737 + Tigger7 DNA MER2_type 29 267 -2220 580 175 10 0 chr3 140872839 140872936 -86651642 + Tigger7 DNA MER2_type 2489 2586 -1 * 844 248 52 16 chr3 140872937 140873187 -86651391 - L1ME1 LINE L1 -874 5272 5014 986 196 14 27 chr3 140873336 140873556 -86651022 + MER49 LTR ERV1 423 639 -284 443 174 0 11 chr3 140873625 140873717 -86650861 + CT-rich Low_complexity Low_complexity 3 93 0 1338 130 127 20 chr3 140873728 140873981 -86650597 + MER49 LTR ERV1 635 914 -9 224 356 50 0 chr3 140873994 140874095 -86650483 - L2 LINE L2 -16 3256 3151 371 179 253 0 chr3 140874858 140874953 -86649625 + MER5A DNA MER1_type 41 159 -30 298 219 175 25 chr3 140874860 140874991 -86649587 - MER5A DNA MER1_type -31 158 4 * 301 253 0 0 chr3 140875008 140875076 -86649502 - MER5B DNA MER1_type -6 172 113 197 248 30 59 chr3 140875383 140875484 -86649094 - MER5A DNA MER1_type -45 144 47 592 242 11 88 chr3 140875855 140876115 -86648463 + L2 LINE L2 3074 3313 0 269 339 9 26 chr3 140876243 140876358 -86648220 - MIR SINE MIR -130 132 20 414 248 26 34 chr3 140876476 140876593 -86647985 - MIR SINE MIR -106 156 41 215 310 35 0 chr3 140876638 140876696 -86647882 - L2 LINE L2 -5 3267 3208 2300 144 73 7 chr3 140876842 140877266 -86647312 + L1PA13 LINE L1 5710 6161 -2 180 304 333 17 chr3 140877426 140877666 -86646912 - L2 LINE L2 -424 2890 2575 742 148 16 0 chr3 140878274 140878396 -86646182 - FLAM_C SINE Alu -5 128 5 22 0 0 0 chr3 140878399 140878421 -86646157 + AT_rich Low_complexity Low_complexity 1 22 0 268 368 50 67 chr3 140879176 140879518 -86645060 + L2 LINE L2 2924 3259 -13 286 178 34 20 chr3 140879600 140879706 -86644872 - L1ME1 LINE L1 -5 6161 6051 571 276 33 11 chr3 140881154 140881335 -86643243 - MER5A DNA MER1_type -4 185 1 259 172 35 17 chr3 140881346 140881404 -86643174 - MER5A DNA MER1_type -3 186 128 2171 143 32 3 chr3 140881406 140881777 -86642801 + L1PA6 LINE L1 5647 6028 -126 4226 168 18 10 chr3 140881884 140883133 -86641445 - L1MA5 LINE L1 -322 5978 4711 826 255 97 3 chr3 140883126 140883467 -86641111 - L1MEc LINE L1 -3167 3048 2676 * 336 352 62 17 chr3 140883580 140883759 -86640819 - MIR SINE MIR -66 196 10 196 197 61 91 chr3 140883812 140883878 -86640700 + L2 LINE L2 3200 3263 -9 1714 291 37 13 chr3 140884063 140884605 -86639973 - MLT1H1 LTR MaLR 0 555 1 1449 160 22 26 chr3 140884977 140885245 -86639333 - MER49 LTR ERV1 -656 267 1 389 234 97 83 chr3 140886102 140886533 -86638045 - L1ME4a LINE L1 -6 6115 5679 1467 265 104 35 chr3 140886665 140887880 -86636698 - L1MEc LINE L1 -3609 2606 1352 509 280 0 5 chr3 140887894 140888087 -86636491 - L1MEc LINE L1 -5205 1191 1000 511 260 7 65 chr3 140888444 140888598 -86635980 + MIR3 SINE MIR 30 174 -34 4788 152 38 14 chr3 140888731 140889576 -86635002 + MER6 DNA MER2_type 1 865 0 288 254 0 0 chr3 140889802 140889936 -86634642 + C-rich Low_complexity Low_complexity 1 134 0 217 235 0 69 chr3 140889975 140890077 -86634501 + C-rich Low_complexity Low_complexity 3 97 0 * 242 277 36 36 chr3 140890009 140890175 -86634403 + (CCCCG)n Simple_repeat Simple_repeat 1 166 0 1987 92 48 4 chr3 140890331 140890604 -86633974 - AluSc SINE Alu -23 286 2 1197 105 0 0 chr3 140890605 140890757 -86633821 - AluSc SINE Alu -157 152 1 183 205 0 0 chr3 140892429 140892468 -86632110 + GA-rich Low_complexity Low_complexity 3 41 0 528 184 48 56 chr3 140892948 140893073 -86631505 - MLT1A1 LTR MaLR -241 124 1 2788 164 17 2 chr3 140893758 140894287 -86630291 - L1MA9 LINE L1 0 6312 5776 243 88 0 0 chr3 140894297 140894331 -86630247 + (TG)n Simple_repeat Simple_repeat 2 35 0 533 112 20 31 chr3 140894356 140894454 -86630124 - L1PB4 LINE L1 -13 6143 6047 256 170 57 0 chr3 140894456 140894509 -86630069 + Charlie3 DNA MER1_type 1 56 -2654 6342 55 16 0 chr3 140894646 140896043 -86628535 + L1PA5 LINE L1 4661 6075 -79 1729 245 90 2 chr3 140896164 140896890 -86627688 - MER63C DNA MER1_type -56 874 2 443 276 57 89 chr3 140897614 140897810 -86626768 - L1ME LINE L1 -4848 1694 1493 723 211 0 0 chr3 140897810 140897938 -86626640 - FLAM_C SINE Alu -5 128 1 443 276 57 89 chr3 140897938 140898366 -86626212 - L1ME LINE L1 -5049 1493 1203 501 241 9 26 chr3 140898679 140898795 -86625783 + MER58A DNA MER1_type 4 117 0 540 325 43 30 chr3 140899341 140899572 -86625006 - MIR SINE MIR -6 256 23 213 301 36 12 chr3 140899677 140899760 -86624818 + MIR SINE MIR 58 142 -66 625 246 72 12 chr3 140900894 140901061 -86623517 + MIR SINE MIR 58 234 -28 5323 132 35 16 chr3 140902493 140903628 -86620950 + L1PB2 LINE L1 4951 6116 -35 903 129 14 0 chr3 140903762 140903909 -86620669 - THE1C-int LTR MaLR -1430 150 2 2331 114 21 26 chr3 140903910 140904287 -86620291 - THE1C LTR MaLR 0 375 1 727 172 86 13 chr3 140904289 140904440 -86620138 + MER2 DNA MER2_type 182 343 -2 954 167 15 5 chr3 140904440 140904644 -86619934 + L1MA9 LINE L1 6106 6311 -1 321 301 70 26 chr3 140904656 140904812 -86619766 - Charlie8 DNA MER1_type -2191 226 64 1049 194 0 5 chr3 140905158 140905344 -86619234 + AluSg/x SINE Alu 123 307 -3 22 94 0 0 chr3 140907123 140907187 -86617391 + AT_rich Low_complexity Low_complexity 1 64 0 831 309 59 16 chr3 140907858 140908165 -86616413 + L3 LINE CR1 1245 1564 -13 326 245 82 41 chr3 140908601 140908699 -86615879 - MLT1I LTR MaLR -154 255 154 536 200 25 0 chr3 140909106 140909226 -86615352 - L1MD3 LINE L1 -25 7970 7848 567 128 0 0 chr3 140909227 140909313 -86615265 - L1MD3 LINE L1 -180 7815 7730 312 269 230 15 chr3 140909583 140909906 -86614672 - L1ME2 LINE L1 -262 5902 5492 462 278 73 28 chr3 140909915 140910203 -86614375 - L1ME2 LINE L1 -1559 4587 4287 1320 207 76 27 chr3 140910219 140910547 -86614031 - MER2 DNA MER2_type 0 344 1 855 306 81 31 chr3 140910627 140911467 -86613111 - L1ME2 LINE L1 -1988 4158 3277 658 293 28 86 chr3 140911632 140912159 -86612419 + MLT1J LTR MaLR 1 492 -19 1709 179 7 0 chr3 140912221 140912500 -86612078 - AluJb SINE Alu -31 281 1 264 174 0 0 chr3 140912536 140912582 -86611996 - L1ME2 LINE L1 -3126 3020 2975 438 208 10 10 chr3 140912629 140912725 -86611853 + MLT1J LTR MaLR 454 549 0 13490 38 8 0 chr3 140912974 140915914 -86608664 - L1PA5 LINE L1 -4 6150 3191 275 363 24 0 chr3 140915950 140916074 -86608504 + MLT1H-int LTR MaLR 437 563 -808 273 291 13 0 chr3 140916404 140916483 -86608095 + MLT1H-int LTR MaLR 786 865 -506 392 272 89 73 chr3 140916701 140917014 -86607564 + MLT1H-int LTR MaLR 1387 1704 -31 924 249 81 58 chr3 140917040 140917491 -86607087 + MLT1H LTR MaLR 7 511 -38 23 0 0 0 chr3 140917693 140917716 -86606862 + AT_rich Low_complexity Low_complexity 1 23 0 921 174 61 20 chr3 140917797 140917993 -86606585 + L1PA16 LINE L1 5963 6166 0 593 266 112 81 chr3 140918056 140918657 -86605921 - L1MEd LINE L1 -872 1618 908 255 226 0 0 chr3 140918675 140918728 -86605850 - AluJ/monomer SINE Alu 0 302 250 871 178 0 35 chr3 140918728 140918897 -86605681 + FRAM SINE Alu 1 40 0 266 252 164 28 chr3 140919741 140919944 -86604634 - MIR SINE MIR 0 262 30 8421 16 0 0 chr3 140920004 140921033 -86603545 + L1PA3 LINE L1 5127 6155 0 2177 131 63 102 chr3 140921609 140922052 -86602526 - MSTC LTR MaLR -2 426 1 246 234 16 0 chr3 140922779 140922843 -86601735 + MARNA DNA Mariner 322 386 -200 427 304 125 5 chr3 140922851 140923080 -86601498 + L1ME LINE L1 5257 5515 -2270 487 277 21 7 chr3 140923238 140923379 -86601199 + MARNA DNA Mariner 400 542 -44 2366 97 0 0 chr3 140924071 140924382 -86600196 + AluY SINE Alu 1 311 0 390 318 104 5 chr3 140924503 140924714 -86599864 + MIR SINE MIR 31 262 0 529 230 123 29 chr3 140925586 140925790 -86598788 - MIR SINE MIR -38 224 2 609 187 129 0 chr3 140926215 140926354 -86598224 + MIR SINE MIR 5 161 -101 3737 210 56 17 chr3 140926368 140927576 -86597002 + L1ME2 LINE L1 4898 6154 -10 295 260 41 16 chr3 140927717 140927840 -86596738 + L1MC4 LINE L1 7916 8041 -1 1427 156 67 4 chr3 140927873 140928098 -86596480 + AluJo SINE Alu 29 267 -45 256 262 151 71 chr3 140928729 140928855 -86595723 - L2 LINE L2 0 3272 3137 2162 188 184 18 chr3 140928953 140929459 -86595119 + MLT1G LTR MaLR 1 590 0 591 239 141 43 chr3 140929606 140929882 -86594696 - L2 LINE L2 -1 3312 3010 298 247 24 12 chr3 140930030 140930115 -86594463 - MIR3 SINE MIR -6 202 117 1786 176 27 122 chr3 140930482 140930998 -86593580 + MLT1C LTR MaLR 1 467 0 510 253 42 58 chr3 140931396 140931637 -86592941 + L1ME LINE L1 5520 5756 -365 617 233 133 43 chr3 140931653 140931863 -86592715 - MIR SINE MIR 0 262 34 247 306 92 20 chr3 140931874 140931972 -86592606 + MIR SINE MIR 86 190 -72 551 274 45 8 chr3 140932932 140933109 -86591469 - MIR SINE MIR -58 150 2 367 214 34 34 chr3 140933781 140933870 -86590708 + L1M4 LINE L1 3794 3882 -2264 1193 215 4 26 chr3 140933872 140934100 -86590478 + MER58A DNA MER1_type 2 224 0 2053 234 86 6 chr3 140934449 140935103 -86589475 + L1ME1 LINE L1 3025 3730 -2416 44085 28 21 1 chr3 140935103 140941133 -86583445 + L1HS LINE L1 2 6155 0 690 217 31 19 chr3 140941143 140941304 -86583274 + L1ME1 LINE L1 3717 3879 -2267 721 167 11 44 chr3 140941327 140941553 -86583025 + MER58A DNA MER1_type 9 195 -29 2577 226 53 40 chr3 140941576 140942279 -86582299 - MER21B LTR ERV1 -54 809 98 420 202 0 96 chr3 140942317 140942411 -86582167 - MER21B LTR ERV1 -766 97 13 1689 216 33 20 chr3 140942457 140942907 -86581671 + L1ME1 LINE L1 3872 4327 -1819 4116 216 33 27 chr3 140943110 140944938 -86579640 + L1ME1 LINE L1 4318 6154 -12 321 153 17 0 chr3 140944959 140945018 -86579560 + HsTC2 DNA Tc2 234 293 -1605 * 631 339 66 14 chr3 140945006 140945354 -86579224 + HsTC2 DNA Tc2 468 833 -1065 356 272 19 56 chr3 140945372 140945534 -86579044 + L1M4 LINE L1 3684 3839 -2307 260 266 16 0 chr3 140945534 140945598 -86578980 + HsTC2 DNA Tc2 819 883 -1015 329 240 104 71 chr3 140945957 140946111 -86578467 - MER5A DNA MER1_type -24 165 7 197 300 181 21 chr3 140946392 140946635 -86577943 - L2 LINE L2 -341 2973 2692 264 272 105 18 chr3 140947340 140947454 -86577124 - L2 LINE L2 -3 3269 3146 2090 121 7 0 chr3 140947973 140948263 -86576315 - AluSq SINE Alu -21 292 1 2251 82 0 60 chr3 140948900 140949231 -86575347 - AluY SINE Alu 0 311 1 334 234 22 69 chr3 140949394 140949539 -86575039 - MIR3 SINE MIR -46 162 21 1626 145 33 7 chr3 140951417 140951693 -86572885 + AluJb SINE Alu 1 283 -29 28 61 0 0 chr3 140953496 140953545 -86571033 + GC_rich Low_complexity Low_complexity 1 49 0 330 67 0 0 chr3 140953623 140953668 -86570910 + (CGGGG)n Simple_repeat Simple_repeat 1 45 0 205 295 13 0 chr3 140953668 140953746 -86570832 + (CGAG)n Simple_repeat Simple_repeat 4 82 0 318 318 37 0 chr3 140954016 140954123 -86570455 + MIR SINE MIR 43 153 -55 841 241 90 23 chr3 140954358 140954657 -86569921 - LTR40b LTR ERVL 0 462 144 260 328 24 92 chr3 140954917 140955329 -86569249 + L2 LINE L2 2230 2613 -701 419 248 162 30 chr3 140955332 140955398 -86569180 - LTR33 LTR ERVL -2 519 463 2437 74 0 0 chr3 140955398 140955707 -86568871 + AluY SINE Alu 1 309 -2 419 248 162 30 chr3 140955707 140955838 -86568740 - LTR33 LTR ERVL -58 463 296 288 273 74 45 chr3 140956033 140956059 -86568519 + L2 LINE L2 2651 2675 -639 1195 192 137 29 chr3 140956059 140956366 -86568212 - MER58B DNA MER1_type -1 340 1 288 273 74 45 chr3 140956366 140956515 -86568063 + L2 LINE L2 2675 2831 -483 609 199 228 47 chr3 140956641 140956983 -86567595 + L1ME4a LINE L1 5697 6100 -21 2034 91 4 0 chr3 140957269 140957534 -86567044 + AluSx SINE Alu 1 266 -46 240 245 236 9 chr3 140958594 140958700 -86565878 + MIR SINE MIR 15 144 -118 718 255 77 49 chr3 140958898 140959145 -86565433 - MIR SINE MIR 0 262 9 712 196 22 7 chr3 140959758 140959896 -86564682 + L1MC4 LINE L1 6745 6884 -1158 * 4336 134 23 8 chr3 140959890 140960702 -86563876 + L1MB1 LINE L1 5146 5972 -196 1248 180 88 20 chr3 140960738 140961043 -86563535 + L1MC4 LINE L1 7680 8005 -37 29 78 0 0 chr3 140961705 140961769 -86562809 + AT_rich Low_complexity Low_complexity 1 64 0 22 35 0 0 chr3 140962296 140962325 -86562253 + AT_rich Low_complexity Low_complexity 1 29 0 1486 158 29 24 chr3 140962340 140962644 -86561934 + L1MB3 LINE L1 5745 6054 -129 195 331 65 24 chr3 140962844 140962968 -86561610 - L3b LINE CR1 -68 1515 1387 32 0 0 0 chr3 140964042 140964074 -86560504 + AT_rich Low_complexity Low_complexity 1 32 0 796 138 8 0 chr3 140964607 140964730 -86559848 + MER3 DNA MER1_type 46 122 -87 1495 152 167 3 chr3 140964738 140965074 -86559504 + MER3 DNA MER1_type 2234 2624 0 707 232 42 6 chr3 140965127 140965295 -86559283 + MER58B DNA MER1_type 168 341 0 875 262 57 59 chr3 140965508 140965912 -86558666 - LTR33 LTR ERVL -2 519 117 2007 189 28 7 chr3 140965923 140966346 -86558232 - LTR40c LTR ERVL 0 465 34 270 241 58 0 chr3 140966357 140966444 -86558134 - LTR33 LTR ERVL -427 94 3 23 33 0 0 chr3 140967025 140967055 -86557523 + AT_rich Low_complexity Low_complexity 1 30 0 598 311 52 0 chr3 140968276 140968469 -86556109 - MIR SINE MIR -17 245 43 31 26 0 0 chr3 140968709 140968747 -86555831 + AT_rich Low_complexity Low_complexity 1 38 0 1611 243 25 23 chr3 140968784 140969299 -86555279 - L1ME3 LINE L1 -57 6105 5590 187 54 54 0 chr3 140969946 140969983 -86554595 + T-rich Low_complexity Low_complexity 2 40 0 2226 96 3 22 chr3 140970992 140971306 -86553272 + AluSg SINE Alu 1 308 -2 258 290 84 0 chr3 140971520 140971651 -86552927 - L1ME LINE L1 -218 5903 5762 25 0 0 0 chr3 140971687 140971712 -86552866 + AT_rich Low_complexity Low_complexity 1 25 0 265 331 32 7 chr3 140971902 140972056 -86552522 + L1ME LINE L1 5631 5788 -333 23 68 0 0 chr3 140972098 140972142 -86552436 + AT_rich Low_complexity Low_complexity 1 44 0 704 177 31 0 chr3 140973538 140973668 -86550910 - MIR SINE MIR -12 250 117 22 0 0 0 chr3 140974397 140974419 -86550159 + AT_rich Low_complexity Low_complexity 1 22 0 406 253 115 69 chr3 140974940 140975245 -86549333 - MLT1I LTR MaLR 0 409 91 3350 173 41 89 chr3 140975274 140976213 -86548365 - MER21A LTR ERV1 -19 912 70 337 123 92 0 chr3 140976313 140976378 -86548200 - MER21A LTR ERV1 -848 83 13 213 175 0 0 chr3 140976378 140976418 -86548160 + (TATG)n Simple_repeat Simple_repeat 2 41 0 27 49 0 0 chr3 140976451 140976492 -86548086 + AT_rich Low_complexity Low_complexity 1 41 0 1008 218 52 13 chr3 140977190 140977419 -86547159 - MIR SINE MIR -8 254 17 239 282 14 0 chr3 140977670 140977741 -86546837 + MARNA DNA Mariner 169 240 -346 257 269 60 67 chr3 140978279 140978413 -86546165 - MER20B DNA MER1_type -650 133 1 204 338 0 0 chr3 140978749 140978817 -86545761 - L2 LINE L2 -2 3311 3244 746 216 30 25 chr3 140979488 140979724 -86544854 - L1MB4 LINE L1 -1 6179 5943 281 274 78 49 chr3 140979725 140979827 -86544751 + L2 LINE L2 3209 3313 0 377 188 0 0 chr3 140980015 140980084 -86544494 + AluJ/FRAM SINE Alu 233 301 -1 411 259 109 25 chr3 140980092 140980891 -86543687 + HAL1b LINE L1 249 1253 -95 * 3728 207 95 27 chr3 140980885 140982686 -86541892 + L1ME1 LINE L1 4104 6055 -111 2274 84 12 26 chr3 140982686 140983030 -86541548 - L1PA14 LINE L1 -17 6144 5806 3728 207 95 27 chr3 140983030 140983151 -86541427 + L1ME1 LINE L1 6055 6166 0 318 235 88 0 chr3 140983195 140983297 -86541281 + HAL1b LINE L1 1063 1173 -175 332 294 59 38 chr3 140983311 140983549 -86541029 - L2 LINE L2 -1518 1796 1554 684 262 107 36 chr3 140983846 140984513 -86540065 - L1MC4a LINE L1 -743 5403 5211 312 289 85 38 chr3 140984524 140984735 -86539843 - L1MC4a LINE L1 -981 5165 4945 2559 68 7 0 chr3 140985234 140985543 -86539035 - AluSx SINE Alu -1 311 1 243 196 87 0 chr3 140986085 140986131 -86538447 - L2 LINE L2 0 3272 3223 550 258 98 45 chr3 140986140 140986402 -86538176 - L1ME4a LINE L1 -177 5944 5656 1912 128 11 4 chr3 140986402 140986726 -86537852 - AluSx SINE Alu 0 326 1 550 258 98 45 chr3 140986726 140986819 -86537759 - L1ME4a LINE L1 -465 5656 5569 353 295 107 44 chr3 140986822 140987120 -86537458 + L1M4 LINE L1 4998 5314 -832 431 305 0 34 chr3 140987354 140987472 -86537106 + L2 LINE L2 3156 3269 -3 547 277 193 5 chr3 140988688 140988890 -86535688 + MIR SINE MIR 4 243 -19 251 296 112 0 chr3 140988891 140988989 -86535589 + MIR3 SINE MIR 81 189 -19 27 73 0 0 chr3 140989305 140989360 -86535218 + AT_rich Low_complexity Low_complexity 1 55 0 1568 131 31 24 chr3 140989648 140989939 -86534639 + L1MB7 LINE L1 5867 6159 -25 1745 151 28 0 chr3 140989946 140990230 -86534348 + AluJo SINE Alu 9 300 -12 324 260 170 15 chr3 140990577 140990750 -86533828 - MIR3 SINE MIR -55 207 14 2158 94 0 38 chr3 140991008 140991328 -86533250 - AluY SINE Alu -3 308 1 268 283 67 58 chr3 140991455 140991575 -86533003 - MIR SINE MIR -67 141 21 1605 167 0 39 chr3 140992114 140992396 -86532182 - AluJb SINE Alu -17 295 25 98 9 0 0 chr3 140992925 140993030 -86531548 + AT_rich Low_complexity Low_complexity 1 105 0 22 0 0 0 chr3 140993076 140993098 -86531480 + AT_rich Low_complexity Low_complexity 1 22 0 12571 190 63 56 chr3 140993618 140993808 -86530770 - L1MA7 LINE L1 -9 6486 6299 2153 127 3 0 chr3 140993808 140994099 -86530479 + AluSq SINE Alu 1 292 -21 12571 190 63 56 chr3 140994099 140997678 -86526900 - L1MA7 LINE L1 -196 6299 3046 1460 115 55 0 chr3 140997678 140997896 -86526682 - MER30 DNA MER1_type 0 230 1 12571 190 63 56 chr3 140997896 141000298 -86524280 - L1MA7 LINE L1 -3449 3046 661 1635 282 61 4 chr3 141000623 141001145 -86523433 - L1MA7 LINE L1 -4768 582 10 698 260 127 42 chr3 141001462 141002015 -86522563 - L1ME4a LINE L1 -225 5896 5297 1855 108 0 4 chr3 141002018 141002277 -86522301 - AluSx SINE Alu 0 312 55 647 233 140 50 chr3 141002795 141003095 -86521483 - L3 LINE CR1 -150 1427 1101 1618 166 4 4 chr3 141003138 141003416 -86521162 + AluJb SINE Alu 22 299 -13 334 240 184 8 chr3 141003478 141003603 -86520975 + MIR SINE MIR 113 259 -3 222 389 46 8 chr3 141003685 141003816 -86520762 + MIR SINE MIR 121 256 -6 1723 201 68 25 chr3 141003841 141004283 -86520295 + LTR40b LTR ERVL 2 462 0 198 0 0 0 chr3 141004497 141004519 -86520059 + (T)n Simple_repeat Simple_repeat 1 22 0 678 75 0 0 chr3 141005321 141005414 -86519164 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 270 260 10 20 chr3 141005680 141005780 -86518798 + C-rich Low_complexity Low_complexity 3 101 0 207 146 0 0 chr3 141005892 141005933 -86518645 + (TTCC)n Simple_repeat Simple_repeat 4 44 0 2031 142 0 16 chr3 141005942 141006245 -86518333 - AluSx SINE Alu -14 298 1 27 0 0 0 chr3 141006363 141006390 -86518188 + AT_rich Low_complexity Low_complexity 1 27 0 2137 178 28 8 chr3 141007072 141007460 -86517118 + MSTD LTR MaLR 1 396 0 1620 263 170 29 chr3 141008307 141009298 -86515280 + L2 LINE L2 1969 3154 -159 2308 114 0 0 chr3 141009298 141009606 -86514972 - AluSq SINE Alu -5 308 1 1620 263 170 29 chr3 141009606 141009692 -86514886 + L2 LINE L2 3154 3227 -86 1953 172 13 0 chr3 141010083 141010385 -86514193 + AluJo SINE Alu 1 306 -6 7240 167 114 100 chr3 141010480 141012903 -86511675 + L1MA5A LINE L1 107 2570 -4219 6261 130 35 5 chr3 141012899 141012911 -86511667 + L1MA5A LINE L1 4873 4883 -2056 * 495 0 0 0 chr3 141012911 141012966 -86511612 + (TA)n Simple_repeat Simple_repeat 1 55 0 6261 130 35 5 chr3 141012966 141014951 -86509627 + L1MA5A LINE L1 4883 6929 -10 28 0 0 0 chr3 141014951 141014979 -86509599 + AT_rich Low_complexity Low_complexity 1 28 0 1531 212 13 56 chr3 141017728 141018101 -86506477 + MLT1A1 LTR MaLR 9 365 0 235 0 57 0 chr3 141019239 141019274 -86505304 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 2011 127 3 7 chr3 141019278 141019561 -86505017 - AluSx SINE Alu -30 282 1 1264 123 56 0 chr3 141020324 141020503 -86504075 + MER5A DNA MER1_type 1 189 0 4400 98 39 20 chr3 141020814 141021455 -86503123 + MER39B LTR ERV1 1 653 0 446 202 50 25 chr3 141021592 141021711 -86502867 - L1MC4a LINE L1 -1847 5961 5840 2167 96 31 0 chr3 141022255 141022546 -86502032 - AluSq SINE Alu -13 300 1 302 89 78 0 chr3 141022674 141022764 -86501814 + (TA)n Simple_repeat Simple_repeat 2 98 0 1093 167 36 31 chr3 141022764 141022986 -86501592 - L1MB8 LINE L1 -10 6168 5946 4406 244 45 28 chr3 141023010 141024028 -86500550 + L1MEc LINE L1 1086 2085 -4130 2177 131 3 0 chr3 141024028 141024334 -86500244 + AluSx SINE Alu 1 307 -5 4406 244 45 28 chr3 141024334 141025753 -86498825 + L1MEc LINE L1 2085 3528 -2687 937 243 52 23 chr3 141025760 141026069 -86498509 + L1MEc LINE L1 3702 4019 -2196 406 346 34 5 chr3 141026271 141026479 -86498099 + L3 LINE CR1 1340 1553 -24 202 359 8 0 chr3 141026812 141026940 -86497638 + L2 LINE L2 1722 1850 -1464 257 194 0 0 chr3 141027212 141027274 -86497304 + L1MCa LINE L1 2404 2465 -3961 347 247 129 6 chr3 141027331 141027509 -86497069 + L1MCa LINE L1 2494 2693 -3733 278 273 79 43 chr3 141027684 141027823 -86496755 + L1MCa LINE L1 2916 3059 -3367 412 244 31 55 chr3 141027941 141028068 -86496510 - L2 LINE L2 -1 3312 3189 388 283 71 0 chr3 141029716 141029829 -86494749 + MIR SINE MIR 63 183 -79 1100 188 0 6 chr3 141030030 141030206 -86494372 - FAM SINE Alu 0 175 1 1250 151 4 22 chr3 141030681 141030906 -86493672 - AluJo SINE Alu -7 305 85 554 116 0 23 chr3 141031065 141031151 -86493427 + AluSg/x SINE Alu 218 301 -8 466 265 130 43 chr3 141031213 141031398 -86493180 - MIR SINE MIR -42 220 20 399 21 0 0 chr3 141031483 141031531 -86493047 + (CA)n Simple_repeat Simple_repeat 1 48 0 2218 129 0 7 chr3 141031695 141032005 -86492573 + AluSx SINE Alu 1 308 -4 214 332 254 10 chr3 141035339 141035532 -86489046 - L2 LINE L2 -646 2668 2429 498 255 182 5 chr3 141036248 141036440 -86488138 - L2 LINE L2 0 3313 3088 194 414 68 0 chr3 141037032 141037165 -86487413 + L2 LINE L2 3122 3263 -9 512 333 94 4 chr3 141037535 141037769 -86486809 - L3 LINE CR1 -400 1177 923 180 250 18 36 chr3 141038027 141038083 -86486495 - MIR SINE MIR -130 132 78 210 191 86 67 chr3 141038197 141038302 -86486276 + MIR SINE MIR 106 212 -50 210 118 0 0 chr3 141039831 141039865 -86484713 + (TTTC)n Simple_repeat Simple_repeat 1 34 0 1622 157 52 36 chr3 141040263 141040569 -86484009 - AluJo SINE Alu -1 311 1 349 295 101 40 chr3 141041158 141041616 -86482962 - L1MEd LINE L1 -898 1592 997 2366 58 3 3 chr3 141041616 141041947 -86482631 - AluY SINE Alu 0 311 1 349 295 101 40 chr3 141041947 141042087 -86482491 - L1MEd LINE L1 -1493 997 867 666 268 160 19 chr3 141042954 141043379 -86481199 - L1M4 LINE L1 -1304 4842 4358 270 270 11 106 chr3 141043726 141043915 -86480663 - L1MC4a LINE L1 -1876 5932 5762 250 288 98 15 chr3 141043919 141044051 -86480527 - LTR67 LTR ERVL -13 544 402 514 271 70 28 chr3 141044373 141044628 -86479950 - L1MC4a LINE L1 -408 5762 5495 342 0 0 0 chr3 141044652 141044690 -86479888 + (TG)n Simple_repeat Simple_repeat 2 39 0 2889 197 111 53 chr3 141044704 141044897 -86479681 - L1MC5 LINE L1 -36 7925 7745 2332 58 4 0 chr3 141044897 141045172 -86479406 + L1PA8 LINE L1 5883 6158 -14 2889 197 111 53 chr3 141045172 141045967 -86478611 - L1MC5 LINE L1 -216 7745 6879 250 244 37 55 chr3 141045989 141046206 -86478372 - L1MC4a LINE L1 -880 5479 5267 260 292 84 55 chr3 141046393 141046727 -86477851 - L1MC4a LINE L1 -1089 5057 4734 2205 123 7 0 chr3 141046727 141047036 -86477542 - AluSq SINE Alu -2 311 1 260 292 84 55 chr3 141047036 141047355 -86477223 - L1MC4a LINE L1 -1412 4734 4385 204 335 101 67 chr3 141047359 141047568 -86477010 + L3b LINE CR1 1329 1544 -39 293 349 109 26 chr3 141047846 141048075 -86476503 - L2 LINE L2 -8 3264 3017 207 331 259 7 chr3 141048238 141048685 -86475893 - L2 LINE L2 -601 2713 2154 1642 134 0 113 chr3 141048970 141049299 -86475279 + AluSg SINE Alu 3 294 -16 529 288 0 74 chr3 141049642 141049857 -86474721 - MIR SINE MIR 0 262 64 23 68 0 0 chr3 141050612 141050656 -86473922 + AT_rich Low_complexity Low_complexity 1 44 0 202 354 0 15 chr3 141050885 141050950 -86473628 + MIR SINE MIR 29 92 -170 3156 128 6 20 chr3 141051336 141051562 -86473016 - L1MA8 LINE L1 -291 6000 5772 2362 124 151 0 chr3 141051562 141051934 -86472644 - MSTC LTR MaLR 0 428 1 3156 128 6 20 chr3 141051934 141052206 -86472372 - L1MA8 LINE L1 -519 5772 5509 642 265 60 6 chr3 141052316 141052436 -86472142 + MER5B DNA MER1_type 1 134 -44 294 29 0 0 chr3 141052436 141052471 -86472107 + (TTTTG)n Simple_repeat Simple_repeat 3 37 0 642 265 60 6 chr3 141052471 141052516 -86472062 + MER5B DNA MER1_type 134 175 -3 23 0 0 0 chr3 141052668 141052691 -86471887 + AT_rich Low_complexity Low_complexity 1 23 0 4089 182 52 18 chr3 141053191 141054888 -86469690 + L1MB4 LINE L1 4298 6133 -47 1975 138 0 7 chr3 141054888 141055179 -86469399 + AluSc SINE Alu 1 289 -20 4089 182 52 18 chr3 141055179 141055229 -86469349 + L1MB4 LINE L1 6133 6180 0 607 104 163 3 chr3 141055260 141055376 -86469202 + MSTA LTR MaLR 1 139 -225 7081 133 12 30 chr3 141055376 141055789 -86468789 + THE1B-int LTR MaLR 454 873 -707 2357 96 44 49 chr3 141055789 141056155 -86468423 + THE1B LTR MaLR 1 364 0 13198 78 3 0 chr3 141056155 141057730 -86466848 + THE1B-int LTR MaLR 1 1580 0 2322 131 42 25 chr3 141057730 141058088 -86466490 + THE1B LTR MaLR 1 364 0 7081 133 12 30 chr3 141058088 141058568 -86466010 + THE1B-int LTR MaLR 871 1326 -254 1902 149 3 10 chr3 141058568 141058864 -86465714 - AluSx SINE Alu -18 294 1 7081 133 12 30 chr3 141058864 141059115 -86465463 + THE1B-int LTR MaLR 1326 1580 0 2010 144 168 29 chr3 141059117 141059491 -86465087 + MSTA LTR MaLR 3 428 0 21 0 0 0 chr3 141059904 141059925 -86464653 + AT_rich Low_complexity Low_complexity 1 21 0 242 274 73 73 chr3 141059989 141060357 -86464221 + HAL1b LINE L1 2 369 -979 913 173 11 78 chr3 141060357 141060548 -86464030 + MLT1A1 LTR MaLR 188 365 0 251 270 21 66 chr3 141060548 141060727 -86463851 + HAL1b LINE L1 496 1722 -678 436 269 59 8 chr3 141061185 141061296 -86463282 + L1MC4 LINE L1 6708 6827 -1215 2320 111 0 0 chr3 141061296 141061603 -86462975 + AluSc SINE Alu 1 307 -2 371 121 30 0 chr3 141061610 141061676 -86462902 + GA-rich Low_complexity Low_complexity 4 71 0 2123 173 86 136 chr3 141061677 141062515 -86462063 + L1MC5 LINE L1 6728 7523 -438 580 197 18 114 chr3 141062586 141062814 -86461764 + L1ME3A LINE L1 5965 6170 0 185 105 0 53 chr3 141062943 141062981 -86461597 + (CCCCCT)n Simple_repeat Simple_repeat 1 36 0 318 318 37 0 chr3 141063152 141063259 -86461319 - MIR SINE MIR -55 153 43 205 295 13 0 chr3 141063529 141063607 -86460971 + (CTCG)n Simple_repeat Simple_repeat 4 82 0 285 75 0 0 chr3 141063607 141063647 -86460931 + (CCCCG)n Simple_repeat Simple_repeat 1 40 0 28 61 0 0 chr3 141063725 141063774 -86460804 + GC_rich Low_complexity Low_complexity 1 49 0 1856 135 30 3 chr3 141065555 141065852 -86458726 - AluJb SINE Alu -7 305 1 334 234 22 69 chr3 141067730 141067875 -86456703 + MIR3 SINE MIR 21 162 -46 2236 85 0 60 chr3 141068038 141068369 -86456209 + AluY SINE Alu 1 311 0 2090 121 7 0 chr3 141069006 141069296 -86455282 + AluSq SINE Alu 1 292 -21 264 272 105 18 chr3 141069815 141069929 -86454649 + L2 LINE L2 3146 3269 -3 197 300 181 21 chr3 141070634 141070877 -86453701 + L2 LINE L2 2692 2973 -341 305 247 104 71 chr3 141071158 141071312 -86453266 + MER5A DNA MER1_type 7 165 -24 260 266 16 0 chr3 141071671 141071735 -86452843 - HsTC2 DNA Tc2 -1015 883 819 356 272 19 56 chr3 141071735 141071897 -86452681 - L1M4 LINE L1 -2307 3839 3684 631 339 66 14 chr3 141071915 141072263 -86452315 - HsTC2 DNA Tc2 -1065 833 468 321 153 17 0 chr3 141072251 141072310 -86452268 - HsTC2 DNA Tc2 -1605 293 234 * 4100 216 33 27 chr3 141072331 141074159 -86450419 - L1ME1 LINE L1 -12 6154 4318 1679 218 33 20 chr3 141074362 141074812 -86449766 - L1ME1 LINE L1 -1819 4327 3872 420 202 0 96 chr3 141074858 141074952 -86449626 + MER21B LTR ERV1 13 97 -766 2577 226 53 40 chr3 141074990 141075693 -86448885 + MER21B LTR ERV1 98 809 -54 721 167 11 44 chr3 141075716 141075942 -86448636 - MER58A DNA MER1_type -29 195 9 2680 231 76 9 chr3 141075965 141076766 -86447812 - L1ME1 LINE L1 -2267 3879 3025 1193 215 4 26 chr3 141077115 141077343 -86447235 - MER58A DNA MER1_type 0 224 2 367 214 34 34 chr3 141077345 141077434 -86447144 - L1M4 LINE L1 -2264 3882 3794 551 274 45 8 chr3 141078106 141078283 -86446295 + MIR SINE MIR 2 182 -58 247 306 92 20 chr3 141079243 141079341 -86445237 - MIR SINE MIR -72 190 86 617 233 133 43 chr3 141079352 141079562 -86445016 + MIR SINE MIR 34 262 0 510 253 42 58 chr3 141079578 141079819 -86444759 - L1ME LINE L1 -365 5756 5520 1792 177 27 120 chr3 141080217 141080732 -86443846 - MLT1C LTR MaLR 0 467 1 298 247 24 12 chr3 141081099 141081184 -86443394 + MIR3 SINE MIR 117 202 -6 591 239 141 43 chr3 141081332 141081608 -86442970 + L2 LINE L2 3010 3312 -1 2194 184 184 18 chr3 141081755 141082261 -86442317 - MLT1G LTR MaLR 0 590 1 256 262 151 71 chr3 141082359 141082485 -86442093 + L2 LINE L2 3137 3272 0 1427 156 67 4 chr3 141083116 141083341 -86441237 - AluJo SINE Alu -45 267 29 295 260 41 16 chr3 141083374 141083497 -86441081 - L1MC4 LINE L1 -1 8041 7916 3737 210 56 17 chr3 141083638 141084846 -86439732 - L1ME2 LINE L1 -10 6154 4898 609 187 129 0 chr3 141084860 141084999 -86439579 - MIR SINE MIR -101 161 5 514 235 123 29 chr3 141085424 141085628 -86438950 + MIR SINE MIR 2 224 -38 221 238 0 0 chr3 141086633 141086675 -86437903 + polypurine Low_complexity Low_complexity 4 45 0 195 324 43 36 chr3 141086697 141086836 -86437742 - MER5A DNA MER1_type 0 189 50 * 716 236 0 0 chr3 141086715 141086859 -86437719 + MER5A DNA MER1_type 30 173 -16 1399 186 118 0 chr3 141086933 141087212 -86437366 + AluSx SINE Alu 1 312 0 190 122 41 82 chr3 141087806 141087855 -86436723 - L2 LINE L2 0 3313 3267 402 118 0 15 chr3 141087859 141087927 -86436651 - MER53 DNA DNA 0 189 123 208 381 52 0 chr3 141087936 141088033 -86436545 - L2 LINE L2 -20 3252 3151 2516 61 0 0 chr3 141088337 141088633 -86435945 + AluY SINE Alu 1 296 -15 576 77 0 0 chr3 141088899 141088977 -86435601 - L1PA5 LINE L1 0 6154 6077 462 229 224 26 chr3 141089711 141089903 -86434675 - MIR SINE MIR -1 261 32 1348 229 84 53 chr3 141089958 141090351 -86434227 - LTR16C LTR ERVL -16 475 71 320 241 13 0 chr3 141091654 141091733 -86432845 - L2 LINE L2 0 3313 3234 275 174 12 0 chr3 141091833 141091919 -86432659 + CT-rich Low_complexity Low_complexity 4 90 0 195 69 0 0 chr3 141091936 141091965 -86432613 + (CCG)n Simple_repeat Simple_repeat 2 30 0 21 71 0 0 chr3 141092044 141092086 -86432492 + GC_rich Low_complexity Low_complexity 1 42 0 23 33 0 0 chr3 141092210 141092240 -86432338 + GC_rich Low_complexity Low_complexity 1 30 0 204 342 87 31 chr3 141093397 141093558 -86431020 - L3 LINE CR1 -1373 204 35 4589 205 55 86 chr3 141093918 141094528 -86430050 + L1M4 LINE L1 2330 2957 -3189 1821 165 4 0 chr3 141094528 141094807 -86429771 + AluSx SINE Alu 1 280 -32 4589 205 55 86 chr3 141094807 141095781 -86428797 + L1M4 LINE L1 2957 3865 -2281 1863 206 45 43 chr3 141095781 141096247 -86428331 + MLT1C LTR MaLR 1 467 0 872 182 7 0 chr3 141096271 141096419 -86428159 + AluJb SINE Alu 3 151 -161 24 0 0 0 chr3 141096440 141096464 -86428114 + AT_rich Low_complexity Low_complexity 1 24 0 482 192 0 10 chr3 141096464 141096568 -86428010 + L1M4 LINE L1 3875 3977 -2169 235 271 45 60 chr3 141096669 141096802 -86427776 - MLT1L LTR MaLR -377 134 4 468 0 0 0 chr3 141096893 141096945 -86427633 + (TG)n Simple_repeat Simple_repeat 2 53 0 853 126 8 0 chr3 141097187 141097306 -86427272 + FLAM_C SINE Alu 1 120 -23 3370 51 46 2 chr3 141097767 141098179 -86426399 - L1PA7 LINE L1 -1 6153 5724 974 193 6 0 chr3 141098427 141098598 -86425980 - MER58B DNA MER1_type 0 341 170 306 345 22 22 chr3 141099240 141099379 -86425199 + L3b LINE CR1 1305 1443 -140 2463 64 10 10 chr3 141099766 141100102 -86424476 - AluY SINE Alu 0 336 1 316 346 83 5 chr3 141100488 141100693 -86423885 - L2 LINE L2 -677 2637 2417 265 271 52 21 chr3 141101056 141101152 -86423426 + MIR3 SINE MIR 81 179 -29 3369 211 64 47 chr3 141101824 141102714 -86421864 - L1ME1 LINE L1 -4 6162 5258 1300 175 6 52 chr3 141102714 141102951 -86421627 + MLT1D LTR MaLR 230 439 -66 2484 34 40 0 chr3 141102951 141103247 -86421331 - AluY SINE Alu -3 308 1 1300 175 6 52 chr3 141103247 141103285 -86421293 + MLT1D LTR MaLR 439 477 -28 25 51 0 0 chr3 141104775 141104814 -86419764 + AT_rich Low_complexity Low_complexity 1 39 0 1237 176 124 37 chr3 141105251 141105574 -86419004 + MLT1B LTR MaLR 1 351 -39 1972 148 102 3 chr3 141106280 141106612 -86417966 - MLT1A1 LTR MaLR 0 365 1 281 258 15 0 chr3 141106874 141106940 -86417638 - MIR3 SINE MIR -5 203 137 193 345 64 45 chr3 141109285 141109395 -86415183 - MIR SINE MIR -62 146 35 769 199 60 7 chr3 141110838 141110989 -86413589 + FRAM SINE Alu 3 161 -5 680 287 72 50 chr3 141114446 141114990 -86409588 + L1MEd LINE L1 438 993 -5537 377 240 18 73 chr3 141115079 141115308 -86409270 + L1MEd LINE L1 2356 2578 -3962 254 261 43 87 chr3 141115312 141115542 -86409036 + L1MEd LINE L1 2631 2850 -3690 1868 108 108 18 chr3 141115962 141116294 -86408284 - L1MB3 LINE L1 -1 6182 5821 290 196 0 0 chr3 141116295 141116341 -86408237 - tRNA-Arg-CGC tRNA tRNA -30 46 1 1659 124 33 7 chr3 141116348 141116622 -86407956 - L1MB3 LINE L1 -352 5831 5551 439 260 85 17 chr3 141117024 141117201 -86407377 - MIR SINE MIR -36 226 38 237 65 0 0 chr3 141118700 141118731 -86405847 + (CAT)n Simple_repeat Simple_repeat 3 33 0 24 63 0 16 chr3 141118965 141118982 -86405596 + AT_rich Low_complexity Low_complexity 1 17 -45 1939 126 77 0 chr3 141118982 141119268 -86405310 + AluJb SINE Alu 1 308 -4 24 63 0 16 chr3 141119268 141119313 -86405265 + AT_rich Low_complexity Low_complexity 17 62 0 42 0 0 0 chr3 141119530 141119572 -86405006 + AT_rich Low_complexity Low_complexity 1 42 0 5176 222 92 5 chr3 141119627 141120731 -86403847 - L1PA13 LINE L1 -5588 1199 1 1533 134 0 0 chr3 141121401 141121610 -86402968 - AluSg/x SINE Alu -18 294 86 229 280 19 56 chr3 141121873 141121980 -86402598 + MIR3 SINE MIR 3 105 -103 305 247 74 0 chr3 141122007 141122088 -86402490 - L2 LINE L2 -45 3227 3141 224 333 0 0 chr3 141122285 141122360 -86402218 + L2 LINE L2 3226 3300 -13 194 260 13 91 chr3 141122517 141122594 -86401984 - L2 LINE L2 -529 2785 2715 1620 238 137 69 chr3 141122610 141123323 -86401255 + LTR41 LTR ERVL 5 766 -7 374 154 13 0 chr3 141123521 141123599 -86400979 + GA-rich Low_complexity Low_complexity 3 81 0 312 207 147 17 chr3 141124461 141124577 -86400001 + L2 LINE L2 3139 3269 -3 996 209 27 14 chr3 141125759 141125979 -86398599 - MIR SINE MIR -33 229 7 181 306 128 33 chr3 141126072 141126252 -86398326 - MIR SINE MIR -32 230 34 477 0 0 0 chr3 141126256 141126309 -86398269 + (TG)n Simple_repeat Simple_repeat 2 54 0 1846 170 11 0 chr3 141126309 141126591 -86397987 - AluJb SINE Alu -27 285 1 3464 235 151 1 chr3 141127778 141128895 -86395683 + L2 LINE L2 1620 2904 -410 303 288 0 93 chr3 141129079 141129129 -86395449 - L2 LINE L2 -1 3271 3218 437 269 9 9 chr3 141129129 141129237 -86395341 + MER81 DNA DNA 4 111 -3 303 288 0 93 chr3 141129237 141129325 -86395253 - L2 LINE L2 -54 3218 3146 477 267 118 5 chr3 141130062 141130249 -86394329 - MIR SINE MIR -4 258 51 210 274 32 0 chr3 141130872 141130934 -86393644 + L2 LINE L2 3250 3313 0 790 262 34 37 chr3 141131623 141131914 -86392664 - L1ME1 LINE L1 -26 6152 5860 606 310 25 0 chr3 141133489 141133689 -86390889 - MIR SINE MIR -43 219 15 253 256 144 0 chr3 141133954 141134044 -86390534 + MIR SINE MIR 85 187 -75 1737 255 19 37 chr3 141134337 141134800 -86389778 - LTR16C LTR ERVL -1 490 36 508 227 86 121 chr3 141136658 141136997 -86387581 - L1MC4 LINE L1 -27 8015 7689 4134 143 32 3 chr3 141136999 141137679 -86386899 - L1MB3 LINE L1 -3 6180 5481 270 0 0 0 chr3 141137682 141137712 -86386866 + (TTTTA)n Simple_repeat Simple_repeat 5 34 0 738 175 16 0 chr3 141137713 141137839 -86386739 - FAM SINE Alu -30 155 28 939 181 88 0 chr3 141137856 141138156 -86386422 - L1MB3 LINE L1 -701 5482 5145 327 160 53 32 chr3 141138159 141138253 -86386325 + Charlie5 DNA MER1_type 2529 2624 0 683 233 67 74 chr3 141138264 141138309 -86386269 - L1MC4 LINE L1 -547 7495 7451 1752 166 42 7 chr3 141138309 141138593 -86385985 + AluJb SINE Alu 3 296 -16 683 233 67 74 chr3 141138593 141138817 -86385761 - L1MC4 LINE L1 -591 7451 7228 627 211 97 11 chr3 141139920 141140095 -86384483 + L1ME1 LINE L1 5012 5201 -945 1066 171 37 0 chr3 141140097 141140221 -86384357 + AluJo SINE Alu 1 136 -176 180 0 0 0 chr3 141140221 141140241 -86384337 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1066 171 37 0 chr3 141140241 141140303 -86384275 + AluJo SINE Alu 136 194 -118 3227 207 47 29 chr3 141140303 141140678 -86383900 + L1ME1 LINE L1 5214 5581 -753 581 0 0 14 chr3 141140678 141140748 -86383830 + (TTTC)n Simple_repeat Simple_repeat 2 70 0 2100 125 0 0 chr3 141140751 141141031 -86383547 - AluSq SINE Alu -33 280 1 3227 207 47 29 chr3 141141031 141141547 -86383031 + L1ME1 LINE L1 5582 6278 -56 232 250 16 0 chr3 141141927 141141991 -86382587 + L1ME4a LINE L1 5479 5543 -641 302 311 170 7 chr3 141142015 141142285 -86382293 + L1ME4a LINE L1 5613 5926 -236 2308 175 46 56 chr3 141142655 141143158 -86381420 - MLT1D LTR MaLR -7 498 1 386 284 196 0 chr3 141143471 141143619 -86380959 - MER5A DNA MER1_type 0 189 13 320 227 34 45 chr3 141145319 141145407 -86379171 - MIR SINE MIR -89 119 33 372 332 87 0 chr3 141146621 141146829 -86377749 - MIR SINE MIR -9 253 28 221 178 0 22 chr3 141146935 141146980 -86377598 + L2 LINE L2 3265 3308 -5 261 225 79 22 chr3 141147831 141147920 -86376658 - L1ME4a LINE L1 -175 5946 5853 299 233 75 42 chr3 141148079 141148199 -86376379 + L1ME4a LINE L1 5996 6119 -2 184 270 0 79 chr3 141148268 141148331 -86376247 + MIR SINE MIR 93 150 -112 602 194 54 11 chr3 141148636 141148845 -86375733 - ORSL DNA AcHobo 0 275 2 662 271 137 9 chr3 141149843 141150220 -86374358 - LTR33 LTR ERVL -1 520 53 1016 199 4 35 chr3 141150499 141150725 -86373853 - MER20 DNA MER1_type 0 219 1 183 184 0 0 chr3 141151186 141151224 -86373354 + T-rich Low_complexity Low_complexity 1 38 0 363 344 53 0 chr3 141151338 141151469 -86373109 + MER91A DNA MER1_type 58 195 -1 2653 167 74 75 chr3 141151841 141152493 -86372085 + MLT1E1 LTR MaLR 1 651 -3 214 93 23 23 chr3 141154061 141154104 -86370474 + (TTCC)n Simple_repeat Simple_repeat 4 46 0 3295 114 26 2 chr3 141154968 141155458 -86369120 - L1PA15 LINE L1 -1 6164 5663 2298 173 40 30 chr3 141156265 141156515 -86368063 + MER61D LTR ERV1 69 326 -175 1963 145 3 0 chr3 141156515 141156804 -86367774 + AluSg SINE Alu 2 291 -19 2298 173 40 30 chr3 141156804 141156981 -86367597 + MER61D LTR ERV1 326 500 -1 825 198 19 123 chr3 141157356 141157664 -86366914 + MER93b LTR ERV1 98 373 0 1542 169 50 0 chr3 141157664 141157906 -86366672 + MER1B DNA MER1_type 1 254 -85 801 79 44 0 chr3 141158027 141158141 -86366437 + L1PA13 LINE L1 6045 6163 0 628 216 113 43 chr3 141160725 141160910 -86363668 + L1ME2 LINE L1 5899 6096 -68 203 61 30 0 chr3 141163973 141164006 -86360572 + (GGGTG)n Simple_repeat Simple_repeat 3 36 0 315 292 88 9 chr3 141164135 141164248 -86360330 + MIR3 SINE MIR 60 181 -27 480 280 86 25 chr3 141164505 141164748 -86359830 + LTR33 LTR ERVL 27 284 -237 516 190 0 10 chr3 141164795 141164895 -86359683 + LTR33 LTR ERVL 423 521 0 537 206 211 20 chr3 141165449 141165653 -86358925 - MIR SINE MIR 0 262 20 771 219 127 20 chr3 141165660 141165952 -86358626 - L1MC5 LINE L1 -30 7931 7609 295 364 54 16 chr3 141166934 141167063 -86357515 + L2 LINE L2 3139 3272 0 371 311 15 15 chr3 141168515 141168650 -86355928 - MER5A DNA MER1_type -47 142 8 329 278 43 9 chr3 141168782 141168897 -86355681 - MIR3 SINE MIR -23 185 67 348 267 50 0 chr3 141169031 141169132 -86355446 - MER5A DNA MER1_type -80 109 4 527 292 185 5 chr3 141169648 141169843 -86354735 + MIR SINE MIR 29 258 -4 1894 283 68 9 chr3 141169975 141170807 -86353771 + MER45C DNA AcHobo 29 953 0 2034 220 5 3 chr3 141171134 141171516 -86353062 + MER119 DNA MER1_type 1 383 -200 1731 93 37 19 chr3 141171526 141171795 -86352783 + L1MA8 LINE L1 5994 6267 -24 934 218 39 5 chr3 141171799 141172005 -86352573 + MER119 DNA MER1_type 369 581 -2 33 43 0 0 chr3 141172217 141172264 -86352314 + AT_rich Low_complexity Low_complexity 1 47 0 2032 133 72 20 chr3 141172853 141173199 -86351379 + THE1B LTR MaLR 1 364 0 478 264 18 31 chr3 141174533 141174696 -86349882 - MIR3 SINE MIR -12 196 36 514 288 19 6 chr3 141176722 141176882 -86347696 + MER117 DNA MER1_type 1 162 -35 570 230 220 0 chr3 141178358 141178549 -86346029 + MIR SINE MIR 29 261 -1 345 164 164 0 chr3 141178806 141178879 -86345699 + L2 LINE L2 3228 3312 -1 320 295 45 0 chr3 141178902 141179014 -86345564 - L2 LINE L2 -1 3271 3155 1759 158 48 0 chr3 141180290 141180581 -86343997 - AluJo SINE Alu -7 305 1 703 317 55 44 chr3 141180882 141181317 -86343261 + L3 LINE CR1 367 806 -771 558 328 129 39 chr3 141181843 141182456 -86342122 + L3 LINE CR1 909 1576 -1 24 0 0 0 chr3 141182606 141182630 -86341948 + AT_rich Low_complexity Low_complexity 1 24 0 192 388 0 10 chr3 141183784 141183882 -86340696 - L2 LINE L2 -68 3204 3108 461 275 126 6 chr3 141184033 141184215 -86340363 - MIR SINE MIR -18 244 41 189 191 32 79 chr3 141184482 141184545 -86340033 - L2 LINE L2 -832 2482 2423 383 305 38 8 chr3 141184939 141185070 -86339508 + MIR3 SINE MIR 25 159 -49 750 272 126 4 chr3 141185072 141185318 -86339260 + Charlie8 DNA MER1_type 1 276 -2141 229 255 0 0 chr3 141185372 141185423 -86339155 + Charlie8 DNA MER1_type 1377 1427 -990 341 326 112 20 chr3 141188257 141188453 -86336125 + MIR SINE MIR 49 262 0 1262 193 149 22 chr3 141190257 141190578 -86334000 + MLT1A1 LTR MaLR 2 363 -2 291 317 168 0 chr3 141190628 141190795 -86333783 + MIR SINE MIR 20 214 -48 386 232 113 40 chr3 141191130 141191281 -86333297 - MIR3 SINE MIR -9 199 38 509 152 0 13 chr3 141192696 141192775 -86331803 + polypyrimidine Low_complexity Low_complexity 1 78 0 189 340 14 49 chr3 141194113 141194257 -86330321 + L2 LINE L2 2346 2484 -830 1089 132 59 64 chr3 141195738 141195958 -86328620 + MER20 DNA MER1_type 1 219 0 309 289 106 17 chr3 141195993 141196173 -86328405 + MIR SINE MIR 63 258 -4 732 336 120 37 chr3 141197734 141198906 -86325672 - L2 LINE L2 -557 2757 1488 320 197 28 0 chr3 141199762 141199833 -86324745 + MIR SINE MIR 72 144 -118 1083 127 0 0 chr3 141199857 141200007 -86324571 + AluSg/x SINE Alu 154 303 -9 808 60 0 17 chr3 141200187 141200304 -86324274 + (TTCC)n Simple_repeat Simple_repeat 2 116 0 211 284 60 90 chr3 141200995 141201129 -86323449 - L2 LINE L2 -1 3271 3142 359 217 123 29 chr3 141201374 141201512 -86323066 + L1ME3A LINE L1 6020 6170 0 207 258 0 45 chr3 141202203 141202269 -86322309 + L2 LINE L2 3241 3303 -10 221 412 18 18 chr3 141202573 141202687 -86321891 - L2 LINE L2 -6 3266 3153 2331 77 0 35 chr3 141202863 141203174 -86321404 - AluY SINE Alu -11 300 1 339 268 80 29 chr3 141203220 141203358 -86321220 - L1ME4a LINE L1 -21 6100 5956 463 256 35 50 chr3 141203745 141203858 -86320720 - L1MC4a LINE L1 -1873 5935 5825 2467 44 3 10 chr3 141203858 141204154 -86320424 - AluY SINE Alu -17 294 1 463 256 35 50 chr3 141204154 141204239 -86320339 - L1MC4a LINE L1 -1983 5825 5740 237 363 0 29 chr3 141204351 141204453 -86320125 - L3b LINE CR1 -237 1346 1248 208 254 41 79 chr3 141204678 141204868 -86319710 + MIR SINE MIR 40 212 -50 192 261 250 0 chr3 141207295 141207383 -86317195 + MIR3 SINE MIR 88 197 -11 763 190 0 21 chr3 141208418 141208560 -86316018 - FRAM SINE Alu -25 151 13 845 165 0 0 chr3 141209612 141209745 -86314833 + FLAM_C SINE Alu 1 133 0 358 300 165 32 chr3 141210426 141210574 -86314004 - L1MC4a LINE L1 -2135 5673 5546 405 0 0 0 chr3 141210574 141210619 -86313959 + (TG)n Simple_repeat Simple_repeat 2 46 0 358 300 165 32 chr3 141210619 141210840 -86313738 - L1MC4a LINE L1 -2262 5546 5255 642 266 30 27 chr3 141211049 141211305 -86313273 - L1MC4a LINE L1 -209 5912 5774 598 230 128 20 chr3 141211305 141211619 -86312959 - Charlie2a DNA MER1_type 0 2862 1473 540 277 245 4 chr3 141211819 141212097 -86312481 - MLT1G1 LTR MaLR -7 588 244 213 369 27 13 chr3 141212816 141212965 -86311613 - MIR SINE MIR -7 255 105 310 238 0 24 chr3 141215056 141215140 -86309438 + MER5A DNA MER1_type 108 189 0 265 325 0 0 chr3 141216970 141217053 -86307525 + MIR SINE MIR 71 153 -109 454 256 31 8 chr3 141218345 141218474 -86306104 - MIR SINE MIR -108 154 23 206 330 0 9 chr3 141219195 141219301 -86305277 + GA-rich Low_complexity Low_complexity 1 105 0 450 301 86 29 chr3 141219544 141219753 -86304825 + MIR SINE MIR 33 253 -9 621 255 5 42 chr3 141220430 141220622 -86303956 + MIR SINE MIR 78 262 0 228 269 11 32 chr3 141220995 141221088 -86303490 + MIR SINE MIR 119 209 -53 212 88 0 0 chr3 141221517 141221551 -86303027 + L2 LINE L2 3280 3313 0 362 225 0 14 chr3 141222427 141222498 -86302080 - MER113 DNA MER1_type? 0 521 452 5121 141 67 26 chr3 141223246 141224145 -86300433 - L1MA5A LINE L1 -10 6287 5426 2393 98 0 0 chr3 141224145 141224442 -86300136 + AluSx SINE Alu 1 297 -15 5121 141 67 26 chr3 141224442 141224486 -86300092 - L1MA5A LINE L1 -871 5426 5385 189 0 0 0 chr3 141224486 141224507 -86300071 + (TTTTG)n Simple_repeat Simple_repeat 3 23 0 5121 141 67 26 chr3 141224507 141224646 -86299932 - L1MA5A LINE L1 -912 5385 5152 1652 173 3 0 chr3 141224643 141224932 -86299646 + L1MA5A LINE L1 4857 5146 -1000 * 392 240 31 128 chr3 141224997 141225193 -86299385 + MER5B DNA MER1_type 1 177 -1 323 257 101 9 chr3 141226780 141226889 -86297689 + MIR SINE MIR 141 259 -3 341 305 50 7 chr3 141227160 141227301 -86297277 - MIR SINE MIR -69 193 47 2061 154 3 3 chr3 141227937 141228248 -86296330 + AluSx SINE Alu 1 311 -1 455 330 32 27 chr3 141228484 141228669 -86295909 - L2 LINE L2 -1 3271 3086 489 250 53 32 chr3 141230185 141230373 -86294205 - L2 LINE L2 0 3313 3122 205 274 12 24 chr3 141230633 141230717 -86293861 - MIR SINE MIR -71 191 109 291 244 61 0 chr3 141230944 141231026 -86293552 - MIR SINE MIR -73 135 49 265 207 186 71 chr3 141232653 141232704 -86291874 + MIR SINE MIR 107 151 -111 1083 278 70 13 chr3 141232704 141233089 -86291489 + MLT1I LTR MaLR 1 407 -2 265 207 186 71 chr3 141233089 141233177 -86291401 + MIR SINE MIR 151 262 0 231 123 88 53 chr3 141233194 141233251 -86291327 - MLT1L LTR MaLR -8 607 549 180 77 0 0 chr3 141233274 141233300 -86291278 + (TTCTCC)n Simple_repeat Simple_repeat 6 31 0 431 272 78 71 chr3 141233362 141233855 -86290723 - L1MEd LINE L1 -4862 1257 776 421 165 0 12 chr3 141233862 141233947 -86290631 - L1MA9 LINE L1 0 6312 6229 270 144 0 75 chr3 141233948 141234136 -86290442 + (TA)n Simple_repeat Simple_repeat 2 175 0 327 181 8 60 chr3 141234147 141234280 -86290298 + (TA)n Simple_repeat Simple_repeat 2 127 0 288 77 0 0 chr3 141234280 141234319 -86290259 + (CA)n Simple_repeat Simple_repeat 2 40 0 1253 221 82 14 chr3 141235034 141235400 -86289178 - MLT1L LTR MaLR -224 391 1 32 43 0 0 chr3 141235595 141235641 -86288937 + AT_rich Low_complexity Low_complexity 1 46 0 2175 132 3 0 chr3 141235843 141236146 -86288432 + AluSx SINE Alu 1 304 -8 627 246 33 28 chr3 141236917 141237128 -86287450 + MIR SINE MIR 2 213 -49 294 254 191 18 chr3 141238722 141238832 -86285746 - L2 LINE L2 -8 3305 3177 191 188 47 62 chr3 141239095 141239159 -86285419 - L2 LINE L2 -537 2777 2715 386 253 173 15 chr3 141240171 141240379 -86284199 - MIR SINE MIR -11 251 15 1821 120 104 10 chr3 141240407 141240716 -86283862 - MER44D DNA MER2_type -1 608 1 23 54 0 0 chr3 141241187 141241224 -86283354 + AT_rich Low_complexity Low_complexity 1 37 0 207 283 94 28 chr3 141242552 141242658 -86281920 - MIR SINE MIR -18 244 132 23 0 0 0 chr3 141243202 141243225 -86281353 + AT_rich Low_complexity Low_complexity 1 23 0 230 313 35 35 chr3 141244403 141244518 -86280060 - L2 LINE L2 -8 3264 3150 306 0 0 0 chr3 141244533 141244567 -86280011 + (TA)n Simple_repeat Simple_repeat 2 35 0 2185 94 3 10 chr3 141244652 141244940 -86279638 + AluSx SINE Alu 22 307 -5 387 257 80 9 chr3 141245066 141245179 -86279399 + L2 LINE L2 3193 3313 0 14927 119 64 4 chr3 141246220 141246742 -86277836 + Tigger1 DNA MER2_type 2 491 -1927 2220 100 3 3 chr3 141246742 141247033 -86277545 + AluSg SINE Alu 1 291 -19 14927 119 64 4 chr3 141247033 141248791 -86275787 + Tigger1 DNA MER2_type 491 2418 0 383 250 14 45 chr3 141248974 141249153 -86275425 - MIR SINE MIR -50 212 41 666 346 60 0 chr3 141251364 141251682 -86272896 - L3 LINE CR1 -2 1575 1239 200 269 135 39 chr3 141251894 141251998 -86272580 - L2 LINE L2 -2 3311 3198 1995 240 102 21 chr3 141254302 141254931 -86269647 + L1ME3 LINE L1 5482 6161 -1 373 310 84 0 chr3 141255633 141255775 -86268803 + MIR3 SINE MIR 40 193 -15 34 0 0 0 chr3 141256954 141256988 -86267590 + AT_rich Low_complexity Low_complexity 1 34 0 349 217 42 105 chr3 141256988 141257131 -86267447 - MARNA DNA Mariner -209 377 244 6421 153 3 1 chr3 141257680 141259355 -86265223 + L1PB1 LINE L1 4470 6148 -3 296 260 108 0 chr3 141259678 141259811 -86264767 - MIR SINE MIR -17 245 94 486 209 26 17 chr3 141259888 141260003 -86264575 - MER5B DNA MER1_type -57 121 6 1089 182 11 0 chr3 141260059 141260246 -86264332 - MER5A DNA MER1_type 0 189 1 182 314 0 0 chr3 141261560 141261611 -86262967 - MIR SINE MIR -59 149 99 256 254 146 31 chr3 141265697 141265827 -86258751 + MIR SINE MIR 2 146 -116 264 241 28 50 chr3 141266021 141266162 -86258416 - MIR3 SINE MIR -61 147 10 189 206 15 103 chr3 141266192 141266260 -86258318 + L2 LINE L2 3241 3302 -11 375 228 0 110 chr3 141266789 141266916 -86257662 + L2 LINE L2 3201 3313 0 338 262 0 12 chr3 141267280 141267364 -86257214 + MIR SINE MIR 28 110 -152 22 0 0 0 chr3 141267686 141267708 -86256870 + AT_rich Low_complexity Low_complexity 1 22 0 999 129 0 0 chr3 141268336 141268514 -86256064 + (TCC)n Simple_repeat Simple_repeat 3 180 0 186 209 23 0 chr3 141269061 141269104 -86255474 - L2 LINE L2 0 3272 3229 590 278 11 22 chr3 141269130 141269310 -86255268 + MER5B DNA MER1_type 1 178 0 181 233 0 23 chr3 141269430 141269473 -86255105 - L2 LINE L2 -9 3263 3222 1184 153 106 33 chr3 141270026 141270327 -86254251 + MER5C DNA MER1_type 2 324 0 2352 107 10 0 chr3 141270419 141270728 -86253850 + AluSx SINE Alu 1 312 0 338 338 72 31 chr3 141270790 141271012 -86253566 - MIR SINE MIR -3 259 29 659 196 127 0 chr3 141271357 141271515 -86253063 - L1MD2 LINE L1 -19 6340 6163 260 327 73 9 chr3 141271524 141271634 -86252944 + L3 LINE CR1 1083 1199 -378 198 262 49 16 chr3 141271682 141271743 -86252835 + L2 LINE L2 3207 3269 -3 226 329 92 58 chr3 141271773 141272101 -86252477 + L3 LINE CR1 1237 1575 -2 469 282 111 14 chr3 141272754 141272970 -86251608 - MIR SINE MIR -6 256 20 216 336 50 0 chr3 141273419 141273538 -86251040 + MIR SINE MIR 58 182 -80 1327 18 37 18 chr3 141274206 141274369 -86250209 - L1PA5 LINE L1 -2 6152 5987 3311 244 48 22 chr3 141274527 141275698 -86248880 - L1ME3A LINE L1 -5 6165 4958 2124 129 0 3 chr3 141276350 141276593 -86247985 - AluSg SINE Alu 0 363 120 207 0 0 0 chr3 141276593 141276616 -86247962 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2124 129 0 3 chr3 141276616 141276736 -86247842 - AluSg SINE Alu -243 120 1 202 180 66 0 chr3 141276877 141276938 -86247640 + T-rich Low_complexity Low_complexity 1 65 0 7919 22 0 3 chr3 141276938 141278003 -86246575 - L1PA3 LINE L1 0 6155 5092 8966 30 3 0 chr3 141278003 141279050 -86245528 + L1PA3 LINE L1 4061 5110 -1036 233 242 0 0 chr3 141279143 141279205 -86245373 - L1ME3A LINE L1 -1233 4913 4852 315 282 159 6 chr3 141280977 141281140 -86243438 - MIR3 SINE MIR -6 202 15 1871 175 0 9 chr3 141283079 141283394 -86241184 - AluJb SINE Alu 0 312 1 804 185 92 16 chr3 141283859 141284043 -86240535 + MLT1C LTR MaLR 6 203 -264 775 135 19 51 chr3 141284827 141284983 -86239595 + L1MB3 LINE L1 6031 6181 -2 21 0 0 0 chr3 141288549 141288570 -86236008 + AT_rich Low_complexity Low_complexity 1 21 0 206 75 100 50 chr3 141288759 141288799 -86235779 + MIR SINE MIR 108 149 -59 422 302 0 8 chr3 141289118 141289247 -86235331 - MER5B DNA MER1_type -6 172 45 816 276 27 69 chr3 141289648 141290110 -86234468 + L2 LINE L2 2792 3227 -86 2008 128 3 24 chr3 141290579 141290900 -86233678 + AluSx SINE Alu 1 315 0 233 328 0 0 chr3 141291284 141291348 -86233230 + MIR3 SINE MIR 124 187 -21 819 191 33 43 chr3 141291556 141291766 -86232812 - MER3 DNA MER1_type -1 208 1 283 274 179 21 chr3 141292824 141293014 -86231564 + MIR SINE MIR 13 232 -30 475 272 72 31 chr3 141294126 141294321 -86230257 - MIR SINE MIR -28 234 32 1687 123 141 11 chr3 141294663 141294939 -86229639 - AluSx SINE Alu 0 312 1 632 278 71 75 chr3 141295015 141295533 -86229045 - MLT1H LTR MaLR -33 516 1 359 269 25 50 chr3 141295810 141295929 -86228649 + MIR SINE MIR 30 145 -63 299 220 66 33 chr3 141296824 141296915 -86227663 - MIR SINE MIR -133 129 36 261 175 153 58 chr3 141296956 141297093 -86227485 + L1ME4a LINE L1 5961 6110 -11 2238 98 0 7 chr3 141297441 141297737 -86226841 - AluSc SINE Alu -12 297 4 1891 166 0 3 chr3 141297982 141298278 -86226300 + AluSx SINE Alu 4 298 -14 188 246 154 46 chr3 141299641 141299771 -86224807 + L2 LINE L2 2245 2388 -926 224 345 69 14 chr3 141300409 141300554 -86224024 + MIR3 SINE MIR 13 165 -43 195 321 24 12 chr3 141301769 141301853 -86222725 + MER5A DNA MER1_type 2 86 -103 2005 137 18 15 chr3 141302006 141302199 -86222379 - MER44D DNA MER2_type -1883 608 417 6227 133 96 17 chr3 141302199 141302652 -86221926 - Tigger3b DNA MER2_type -1798 1230 814 1664 178 10 24 chr3 141302652 141302950 -86221628 + AluJo SINE Alu 1 294 -18 6227 133 96 17 chr3 141302950 141303635 -86220943 - Tigger3b DNA MER2_type -2214 814 2 2005 137 18 15 chr3 141303635 141303777 -86220801 - MER44D DNA MER2_type -2074 417 2 340 319 54 10 chr3 141304343 141304545 -86220033 + MIR SINE MIR 40 253 -9 1581 155 0 72 chr3 141304787 141305065 -86219513 + AluSx SINE Alu 11 268 -44 1501 230 86 45 chr3 141305996 141306483 -86218095 - MLT1F1 LTR MaLR 0 567 61 2080 142 25 71 chr3 141306810 141307005 -86217573 + MLT1B LTR MaLR 1 169 -221 2011 142 93 51 chr3 141307005 141307414 -86217164 - MSTB LTR MaLR 0 426 1 2080 142 25 71 chr3 141307414 141307626 -86216952 + MLT1B LTR MaLR 169 389 -1 702 268 104 4 chr3 141307967 141308198 -86216380 + MIR SINE MIR 8 261 -1 221 171 0 0 chr3 141308610 141308651 -86215927 + L2 LINE L2 3268 3308 -5 2038 161 0 0 chr3 141308834 141309144 -86215434 - AluSq SINE Alu -3 310 1 491 239 181 16 chr3 141310115 141310303 -86214275 + MIR SINE MIR 13 231 -31 198 277 119 20 chr3 141310352 141310453 -86214125 + L2 LINE L2 3198 3308 -5 2105 136 0 3 chr3 141310902 141311210 -86213368 - AluSx SINE Alu -5 307 1 309 75 0 0 chr3 141311211 141311251 -86213327 + THE1B LTR MaLR 325 364 0 218 157 20 59 chr3 141311780 141311831 -86212747 - MER5B DNA MER1_type -5 173 125 607 188 27 34 chr3 141311979 141312128 -86212450 - MER5A DNA MER1_type -10 179 32 2771 186 15 19 chr3 141312501 141313022 -86211556 - LTR40a LTR ERVL 0 519 1 1078 88 0 7 chr3 141313349 141313486 -86211092 + AluSq/x SINE Alu 1 136 -177 2210 112 7 3 chr3 141313486 141313782 -86210796 + AluSc SINE Alu 1 297 -12 732 220 75 23 chr3 141314304 141314477 -86210101 - MLT1H1 LTR MaLR -1 589 408 4434 182 54 17 chr3 141314548 141315366 -86209212 - MER21B LTR ERV1 -15 848 1 917 274 73 26 chr3 141315403 141315782 -86208796 - MLT1H1 LTR MaLR -195 395 1 1702 164 78 60 chr3 141315896 141316036 -86208542 + MLT1B LTR MaLR 1 137 -253 3319 85 23 15 chr3 141316036 141316506 -86208072 + L1MA1 LINE L1 5829 6302 0 1702 164 78 60 chr3 141316506 141316748 -86207830 + MLT1B LTR MaLR 137 390 0 436 278 73 31 chr3 141316925 141317116 -86207462 + LTR33 LTR ERVL 16 214 -307 310 308 46 0 chr3 141317194 141317324 -86207254 + LTR33A LTR ERVL 380 515 -8 412 258 23 64 chr3 141317480 141317744 -86206834 - L1ME4a LINE L1 -56 6065 5813 314 276 124 41 chr3 141318175 141318320 -86206258 + MIR SINE MIR 16 172 -90 667 291 62 4 chr3 141320636 141320880 -86203698 - MIR SINE MIR -2 260 3 359 276 104 41 chr3 141322042 141322277 -86202301 + MIR SINE MIR 1 246 -16 222 316 13 0 chr3 141323357 141323436 -86201142 - L2 LINE L2 0 3313 3234 287 315 110 14 chr3 141323952 141324098 -86200480 + MIR3 SINE MIR 8 167 -41 1902 159 46 17 chr3 141324100 141324445 -86200133 - MLT1A1 LTR MaLR 0 365 11 358 272 119 67 chr3 141324766 141325013 -86199565 + MLT1J LTR MaLR 100 426 -189 254 248 67 29 chr3 141325013 141325118 -86199460 + MLT1J LTR MaLR 390 498 -13 2079 133 0 3 chr3 141326073 141326374 -86198204 - AluJb SINE Alu -6 306 7 313 143 78 52 chr3 141327551 141327628 -86196950 - MIR SINE MIR -116 146 68 1322 188 4 30 chr3 141327671 141327905 -86196673 - MER8 DNA MER2_type -11 228 1 464 235 110 70 chr3 141328954 141329154 -86195424 + MER63A DNA MER1_type 1 208 -2 509 246 39 8 chr3 141329223 141329353 -86195225 + MIR SINE MIR 59 192 -70 1240 269 108 24 chr3 141329924 141330333 -86194245 - MLT1J2 LTR MaLR -2 448 6 637 284 49 22 chr3 141331420 141331645 -86192933 + MIR SINE MIR 24 254 -8 1723 187 0 3 chr3 141332511 141332815 -86191763 + AluJo SINE Alu 1 303 0 1809 112 81 41 chr3 141333051 141333346 -86191232 + AluSx SINE Alu 1 307 -5 504 250 7 42 chr3 141333567 141333711 -86190867 + MIR3 SINE MIR 46 184 -24 700 298 8 36 chr3 141333837 141334085 -86190493 + MIR SINE MIR 16 256 -6 787 150 7 26 chr3 141334086 141334239 -86190339 + MER104 DNA Tc2 1 150 -30 285 236 158 31 chr3 141334995 141335122 -86189456 - MIR SINE MIR -21 241 99 725 306 63 34 chr3 141336008 141336810 -86187768 - L1ME4a LINE L1 -21 6100 5279 419 358 48 24 chr3 141336965 141337379 -86187199 - L1ME4a LINE L1 -1075 5071 4648 183 80 0 0 chr3 141337959 141337984 -86186594 + (TA)n Simple_repeat Simple_repeat 2 26 0 361 236 96 25 chr3 141338019 141338218 -86186360 - L1ME4a LINE L1 -196 5925 5713 212 231 0 0 chr3 141339244 141339283 -86185295 + (CTCA)n Simple_repeat Simple_repeat 1 39 0 483 218 170 14 chr3 141339403 141339550 -86185028 - MIR SINE MIR -70 192 23 373 287 56 7 chr3 141340966 141341109 -86183469 + L2 LINE L2 3160 3309 -4 189 107 0 0 chr3 141341283 141341311 -86183267 + (TG)n Simple_repeat Simple_repeat 1 28 0 180 322 118 66 chr3 141342980 141343191 -86181387 - L2 LINE L2 -23 3249 3028 1978 129 0 0 chr3 141343767 141344071 -86180507 - AluSg SINE Alu 0 304 1 311 288 0 27 chr3 141344188 141344213 -86180365 + CT-rich Low_complexity Low_complexity 2 26 -83 276 30 0 0 chr3 141344213 141344246 -86180332 + (TG)n Simple_repeat Simple_repeat 2 34 0 311 288 0 27 chr3 141344246 141344331 -86180247 + CT-rich Low_complexity Low_complexity 26 109 0 205 278 160 21 chr3 141345194 141345388 -86179190 - L2 LINE L2 -16 3297 3077 190 329 61 30 chr3 141345422 141345586 -86178992 - L2 LINE L2 -780 2534 2366 1863 157 0 11 chr3 141346446 141346733 -86177845 - AluJb SINE Alu -28 284 1 323 208 14 14 chr3 141346762 141346834 -86177744 - MER5A DNA MER1_type -84 105 34 215 310 44 26 chr3 141346976 141347089 -86177489 + L2 LINE L2 3197 3311 -2 1636 112 9 0 chr3 141348101 141348325 -86176253 + MER30 DNA MER1_type 1 226 -4 319 254 0 0 chr3 141351365 141351436 -86173142 - L2 LINE L2 0 3272 3202 369 0 0 0 chr3 141351492 141351533 -86173045 + (T)n Simple_repeat Simple_repeat 1 41 0 349 247 108 0 chr3 141352424 141352517 -86172061 + MER58A DNA MER1_type 3 105 -2 * 1658 201 89 20 chr3 141352514 141352917 -86171661 - MLT1D LTR MaLR 0 505 75 642 202 16 16 chr3 141352946 141353075 -86171503 + MER58A DNA MER1_type 96 224 0 263 354 56 7 chr3 141353712 141353856 -86170722 + L3 LINE CR1 1417 1567 -10 236 122 0 68 chr3 141354636 141354710 -86169868 + (A)n Simple_repeat Simple_repeat 1 69 0 572 204 13 70 chr3 141355414 141355571 -86169007 - MER103 DNA DNA -1 165 18 341 265 76 38 chr3 141358355 141358487 -86166091 - MIR SINE MIR -42 220 84 791 165 87 61 chr3 141359046 141359276 -86165302 + MER106A DNA MER1_type 1 236 0 320 290 80 17 chr3 141359359 141359535 -86165043 - MIR3 SINE MIR -2 206 20 287 333 86 6 chr3 141359991 141360165 -86164413 + L3b LINE CR1 1302 1489 -94 2161 132 0 0 chr3 141361194 141361490 -86163088 - AluSx SINE Alu -16 296 1 200 351 11 11 chr3 141361751 141361845 -86162733 + L3 LINE CR1 206 299 -1278 753 290 147 69 chr3 141361852 141362362 -86162216 + L3 LINE CR1 1022 1571 -6 196 296 0 0 chr3 141362755 141362799 -86161779 - L3 LINE CR1 -18 1559 1516 249 203 17 17 chr3 141362807 141362866 -86161712 - L2 LINE L2 0 3272 3214 1157 256 151 29 chr3 141364151 141364596 -86159982 - LTR33 LTR ERVL -22 499 1 211 315 54 0 chr3 141364602 141364694 -86159884 + MIR SINE MIR 87 183 -79 261 212 15 30 chr3 141365151 141365217 -86159361 + L1ME LINE L1 5824 5888 -282 292 302 137 19 chr3 141365821 141366026 -86158552 - L2 LINE L2 -456 2858 2630 744 250 127 0 chr3 141366053 141366273 -86158305 - MIR SINE MIR 0 262 15 317 308 30 15 chr3 141367574 141367707 -86156871 + MIR SINE MIR 122 256 -6 186 171 0 0 chr3 141367786 141367827 -86156751 + (TTAGGG)n Simple_repeat Simple_repeat 3 43 0 2249 102 3 16 chr3 141368059 141368364 -86156214 - AluSq SINE Alu -12 301 1 458 315 112 4 chr3 141368372 141368639 -86155939 - L1ME4a LINE L1 -188 5933 5638 6076 116 14 35 chr3 141368677 141369701 -86154877 - L1MA4 LINE L1 0 6300 5299 877 135 13 7 chr3 141369755 141370025 -86154553 - L1MA2 LINE L1 -356 5947 5543 26 50 0 0 chr3 141371340 141371380 -86153198 + AT_rich Low_complexity Low_complexity 1 40 0 216 374 30 0 chr3 141373239 141373370 -86151208 - MIR3 SINE MIR 0 208 74 1930 148 3 3 chr3 141375185 141375488 -86149090 - AluJb SINE Alu 0 312 10 472 118 75 11 chr3 141375981 141376074 -86148504 + MER5B DNA MER1_type 1 99 -79 235 341 16 8 chr3 141376147 141376270 -86148308 + MIR3 SINE MIR 82 205 -3 334 239 11 22 chr3 141376809 141376901 -86147677 - MER113 DNA MER1_type? -120 401 311 268 317 16 8 chr3 141378123 141378246 -86146332 + MIR3 SINE MIR 82 205 -3 252 0 0 0 chr3 141378249 141378277 -86146301 + (A)n Simple_repeat Simple_repeat 1 28 0 374 308 97 11 chr3 141378289 141378474 -86146104 + MIR SINE MIR 24 224 -38 265 151 0 0 chr3 141378713 141378766 -86145812 + L2 LINE L2 2910 2962 -310 2366 79 7 0 chr3 141378779 141379070 -86145508 - AluSq SINE Alu -20 293 1 348 242 11 32 chr3 141379237 141379332 -86145246 + L2 LINE L2 3180 3272 0 260 256 131 44 chr3 141381117 141381254 -86143324 + MER5A DNA MER1_type 30 189 0 25 0 0 0 chr3 141381657 141381682 -86142896 + AT_rich Low_complexity Low_complexity 1 25 0 201 236 84 150 chr3 141382106 141382580 -86141998 + L2 LINE L2 1854 2296 -1018 236 280 0 0 chr3 141382608 141382658 -86141920 - MER2 DNA MER2_type 0 345 296 363 175 16 0 chr3 141382697 141382760 -86141818 + MER2 DNA MER2_type 282 345 0 781 253 49 66 chr3 141382832 141383259 -86141319 - LTR16A1 LTR ERVL -35 422 3 413 260 232 0 chr3 141383287 141383464 -86141114 - MIR SINE MIR -32 230 13 658 254 81 16 chr3 141383481 141383729 -86140849 - L2 LINE L2 -38 3275 3012 2327 264 43 39 chr3 141383938 141384606 -86139972 - MER115 DNA AcHobo -1 692 22 952 90 0 8 chr3 141384882 141385004 -86139574 - AluSq/x SINE Alu -179 133 13 560 301 80 14 chr3 141385008 141385221 -86139357 + MIR SINE MIR 22 248 -14 514 257 83 26 chr3 141385705 141385985 -86138593 + L1ME LINE L1 5272 5576 -545 1033 162 6 6 chr3 141387257 141387430 -86137148 + FAM SINE Alu 1 173 -2 1349 165 0 48 chr3 141387826 141388074 -86136504 - MER46A DNA MER2_type 0 236 1 350 266 9 18 chr3 141388727 141388840 -86135738 + L1ME LINE L1 5518 5629 -492 1661 129 22 0 chr3 141388840 141389111 -86135467 - L1MA4 LINE L1 -1 6299 6023 1744 119 8 4 chr3 141389123 141389367 -86135211 - AluSx SINE Alu -14 298 54 206 203 0 17 chr3 141389626 141389685 -86134893 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 2248 88 14 17 chr3 141389738 141390069 -86134509 + AluSx SINE Alu 1 330 0 566 209 76 3 chr3 141391198 141391345 -86133233 - MER5A DNA MER1_type -6 172 9 715 294 6 0 chr3 141391364 141391541 -86133037 + MER5B DNA MER1_type 1 178 0 662 269 50 0 chr3 141391707 141391908 -86132670 - MIR SINE MIR -7 255 45 577 213 218 15 chr3 141393318 141393515 -86131063 - MIR SINE MIR -15 247 11 23 78 0 0 chr3 141394376 141394427 -86130151 + AT_rich Low_complexity Low_complexity 1 51 0 1929 277 18 6 chr3 141394661 141395156 -86129422 + MER115 DNA AcHobo 192 692 -1 580 270 81 16 chr3 141395366 141395614 -86128964 + L2 LINE L2 3012 3275 -38 254 295 188 0 chr3 141395637 141395749 -86128829 + MIR SINE MIR 19 151 -111 259 137 20 20 chr3 141395871 141395922 -86128656 + MIR SINE MIR 94 144 -118 204 265 0 0 chr3 141396878 141396927 -86127651 - MIR SINE MIR -53 209 161 5313 199 156 5 chr3 141397037 141398413 -86126165 + L1MB8 LINE L1 3765 5348 -798 404 213 23 8 chr3 141399431 141399534 -86125044 + AluS SINE Alu 1 78 -225 3293 172 11 58 chr3 141399670 141400325 -86124253 + L1MB8 LINE L1 5485 6169 -9 279 79 0 0 chr3 141400325 141400363 -86124215 + (CATTT)n Simple_repeat Simple_repeat 3 40 0 2281 99 0 0 chr3 141400363 141400645 -86123933 - AluSq SINE Alu -31 282 1 3293 172 11 58 chr3 141400645 141400684 -86123894 + L1MB8 LINE L1 6109 6148 -30 2380 99 7 0 chr3 141401135 141401438 -86123140 + AluSp SINE Alu 1 305 -8 22 35 0 0 chr3 141401529 141401558 -86123020 + AT_rich Low_complexity Low_complexity 1 29 0 723 73 0 0 chr3 141402740 141402836 -86121742 - L1PA6 LINE L1 0 6154 6059 259 281 44 44 chr3 141404072 141404207 -86120371 + L2 LINE L2 2925 3059 -213 614 232 120 105 chr3 141404447 141404904 -86119674 - MLT1L LTR MaLR -8 607 144 720 177 50 100 chr3 141405048 141405092 -86119486 - MER3 DNA MER1_type 0 209 164 641 167 23 30 chr3 141405092 141405224 -86119354 + L1PB4 LINE L1 6026 6156 0 720 177 50 100 chr3 141405224 141405257 -86119321 - MER3 DNA MER1_type -45 164 131 2260 101 0 0 chr3 141405257 141405543 -86119035 - AluSq SINE Alu -27 286 1 720 177 50 100 chr3 141405543 141405684 -86118894 - MER3 DNA MER1_type -78 131 1 1033 59 5 43 chr3 141405770 141405957 -86118621 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 282 224 0 17 chr3 141405965 141406023 -86118555 + CT-rich Low_complexity Low_complexity 3 59 0 1470 132 0 35 chr3 141406027 141406254 -86118324 - AluSg SINE Alu -87 223 5 2263 99 0 3 chr3 141406969 141407275 -86117303 - AluSx SINE Alu 0 305 1 45 34 0 0 chr3 141407365 141407424 -86117154 + AT_rich Low_complexity Low_complexity 1 59 0 645 174 0 25 chr3 141407663 141407784 -86116794 - FLAM_C SINE Alu -7 136 19 39 22 0 0 chr3 141407788 141407834 -86116744 + AT_rich Low_complexity Low_complexity 1 46 0 198 0 0 0 chr3 141409247 141409269 -86115309 + (T)n Simple_repeat Simple_repeat 1 22 0 306 305 170 14 chr3 141409294 141409435 -86115143 + MER5A DNA MER1_type 27 189 0 369 0 0 0 chr3 141410638 141410679 -86113899 + (CA)n Simple_repeat Simple_repeat 1 41 0 547 227 135 31 chr3 141411216 141411379 -86113199 + MER5A DNA MER1_type 10 189 0 625 224 73 22 chr3 141411384 141411563 -86113015 + MIR SINE MIR 15 202 -60 1764 77 7 0 chr3 141411563 141411833 -86112745 + L1PB1 LINE L1 5709 6151 0 21 0 0 0 chr3 141411851 141411872 -86112706 + AT_rich Low_complexity Low_complexity 1 21 0 1293 287 78 7 chr3 141412390 141413075 -86111503 - L2 LINE L2 -71 3242 2503 1468 187 141 20 chr3 141414073 141414257 -86110321 + MSTB LTR MaLR 4 164 -262 1780 156 22 0 chr3 141414257 141414533 -86110045 + AluJb SINE Alu 1 282 -30 1468 187 141 20 chr3 141414533 141414695 -86109883 + MSTB LTR MaLR 164 392 -34 4211 51 0 0 chr3 141414695 141415204 -86109374 - L1PA5 LINE L1 0 6154 5646 722 37 0 0 chr3 141415205 141415287 -86109291 + L1PA5 LINE L1 5554 5635 -519 244 103 26 0 chr3 141415289 141415328 -86109250 + MSTB LTR MaLR 417 456 -1 325 233 29 82 chr3 141415448 141415577 -86109001 + MER5B DNA MER1_type 66 178 0 534 217 17 8 chr3 141416263 141416383 -86108195 - L2 LINE L2 -5 3308 3188 435 310 91 20 chr3 141417435 141417632 -86106946 - MIR SINE MIR -50 212 2 3781 187 58 36 chr3 141417814 141418721 -86105857 + MER63C DNA MER1_type 1 927 -3 278 138 15 77 chr3 141418721 141418786 -86105792 + MIR SINE MIR 84 144 -118 217 245 0 0 chr3 141419737 141419786 -86104792 - MIR SINE MIR -53 209 161 1141 259 131 5 chr3 141421185 141421552 -86103026 - LTR16C LTR ERVL 0 491 79 343 258 50 25 chr3 141421862 141421982 -86102596 + L3 LINE CR1 1343 1465 -112 220 195 102 119 chr3 141421956 141422074 -86102504 - L2 LINE L2 -2 3270 3155 * 419 225 178 2 chr3 141423034 141423179 -86101399 + MIR3 SINE MIR 18 187 -21 345 273 83 30 chr3 141425005 141425137 -86099441 - MIR SINE MIR -112 150 12 531 180 141 0 chr3 141425276 141425404 -86099174 - Charlie4a DNA MER1_type 0 508 363 1038 189 22 3 chr3 141425406 141425649 -86098929 + L1PA16 LINE L1 5886 6168 0 1234 203 84 13 chr3 141425683 141425993 -86098585 - Charlie4a DNA MER1_type -176 332 1 809 135 68 14 chr3 141426934 141427082 -86097496 - L1MA10 LINE L1 -2 6332 6177 226 288 0 14 chr3 141429009 141429082 -86095496 + MIR SINE MIR 159 230 -32 207 265 108 0 chr3 141430163 141430246 -86094332 - MIR3 SINE MIR -35 173 82 201 274 0 0 chr3 141430413 141430475 -86094103 + (CACG)n Simple_repeat Simple_repeat 2 63 0 288 0 0 0 chr3 141431479 141431511 -86093067 + (TG)n Simple_repeat Simple_repeat 1 32 0 192 241 93 0 chr3 141431542 141431596 -86092982 - L2 LINE L2 0 3272 3214 279 0 0 0 chr3 141431941 141431972 -86092606 + (TG)n Simple_repeat Simple_repeat 1 31 0 220 204 93 0 chr3 141432003 141432057 -86092521 - L2 LINE L2 0 3272 3214 21 57 0 0 chr3 141432144 141432179 -86092399 + AT_rich Low_complexity Low_complexity 1 35 0 459 293 75 6 chr3 141432640 141432814 -86091764 + MIR SINE MIR 21 206 -56 286 242 28 129 chr3 141433080 141433328 -86091250 - L2 LINE L2 -179 3093 2871 337 297 76 58 chr3 141433479 141433873 -86090705 - L2 LINE L2 -665 2649 2249 215 186 47 0 chr3 141434976 141435019 -86089559 + (CATG)n Simple_repeat Simple_repeat 3 47 0 307 236 75 0 chr3 141435033 141435122 -86089456 + MIR SINE MIR 41 136 -72 1196 125 0 0 chr3 141435348 141435516 -86089062 + AluSg/x SINE Alu 145 312 0 204 182 0 0 chr3 141435951 141435995 -86088583 + CT-rich Low_complexity Low_complexity 1 44 0 225 0 0 0 chr3 141436074 141436099 -86088479 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 217 263 36 66 chr3 141437048 141437185 -86087393 + MIR SINE MIR 80 212 -50 976 242 0 62 chr3 141439209 141439482 -86085096 - MIR SINE MIR -3 259 4 366 267 79 30 chr3 141440161 141440326 -86084252 - MIR SINE MIR -25 237 65 485 281 35 78 chr3 141440427 141440658 -86083920 - MIR SINE MIR -30 232 12 1053 162 222 65 chr3 141440713 141441083 -86083495 + MSTC LTR MaLR 1 428 0 1993 135 0 10 chr3 141441854 141442151 -86082427 + AluSx SINE Alu 1 294 -18 660 57 28 0 chr3 141442152 141442258 -86082320 + (TA)n Simple_repeat Simple_repeat 2 110 0 324 306 67 83 chr3 141442419 141443258 -86081320 + L1MEc LINE L1 135 893 -5312 4228 240 43 64 chr3 141443403 141445384 -86079194 - L1MEc LINE L1 -2553 3662 1734 2645 252 22 26 chr3 141445388 141446345 -86078233 - L1M4c LINE L1 -4428 2710 1618 1343 172 5 0 chr3 141446361 141446565 -86078013 + AluJb SINE Alu 86 290 -22 5182 221 89 55 chr3 141446579 141448123 -86076455 - L1M4c LINE L1 -5254 1605 9 352 296 37 37 chr3 141448207 141448342 -86076236 - MER5A DNA MER1_type -15 174 40 306 0 0 0 chr3 141448488 141448522 -86076056 + (TG)n Simple_repeat Simple_repeat 2 35 0 2051 164 5 54 chr3 141449603 141450012 -86074566 + MLT1B LTR MaLR 1 389 -1 299 282 188 0 chr3 141450390 141450507 -86074071 + L2 LINE L2 3134 3272 0 188 167 0 37 chr3 141450764 141450818 -86073760 + (TATATG)n Simple_repeat Simple_repeat 3 54 0 198 274 65 0 chr3 141451891 141451953 -86072625 + L2 LINE L2 2682 2747 -567 953 263 43 71 chr3 141451953 141452349 -86072229 + MLT1I LTR MaLR 1 385 -24 263 141 62 31 chr3 141452421 141452485 -86072093 + HSMAR1 DNA Mariner 1222 1287 0 802 204 34 0 chr3 141452907 141453083 -86071495 - MIR SINE MIR -7 255 74 552 299 116 3 chr3 141453082 141453393 -86071185 - L3 LINE CR1 -85 1492 1147 * 439 293 123 75 chr3 141454463 141454958 -86069620 + MLT1K LTR MaLR 38 556 -32 309 247 22 11 chr3 141454974 141455063 -86069515 - L3 LINE CR1 -277 1300 1211 216 128 0 0 chr3 141456810 141456828 -86067750 + (ATG)n Simple_repeat Simple_repeat 2 19 -21 2499 118 0 27 chr3 141456828 141457202 -86067376 - THE1B LTR MaLR 0 364 1 216 128 0 0 chr3 141457202 141457222 -86067356 + (ATG)n Simple_repeat Simple_repeat 18 40 0 652 226 24 12 chr3 141457244 141457408 -86067170 - MIR SINE MIR -34 228 63 2334 91 3 13 chr3 141457532 141457839 -86066739 + AluSq SINE Alu 3 306 -7 390 288 76 0 chr3 141457839 141457960 -86066618 - L2 LINE L2 -17 3255 3122 183 42 0 0 chr3 141458710 141458734 -86065844 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1827 129 0 0 chr3 141458737 141458985 -86065593 - AluSx SINE Alu -30 282 35 14401 85 20 14 chr3 141460690 141462754 -86061824 - L1P LINE L1 -1617 4529 2454 434 281 45 56 chr3 141462847 141463025 -86061553 + MER5A DNA MER1_type 7 182 -7 264 277 45 18 chr3 141463985 141464097 -86060481 - L2 LINE L2 -65 3248 3134 1864 178 3 7 chr3 141464164 141464467 -86060111 + AluSx SINE Alu 1 302 -10 2283 122 0 3 chr3 141464597 141464909 -86059669 + AluSx SINE Alu 1 311 -1 191 344 0 16 chr3 141465595 141465659 -86058919 - L2 LINE L2 -9 3263 3201 243 0 0 0 chr3 141466075 141466102 -86058476 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2292 175 24 0 chr3 141466105 141466516 -86058062 - L1PB4 LINE L1 -12 6144 5724 374 266 84 14 chr3 141466970 141467102 -86057476 + L2 LINE L2 2567 2711 -603 1585 184 21 11 chr3 141467102 141467384 -86057194 - AluJo SINE Alu -27 285 1 326 322 98 42 chr3 141467563 141467849 -86056729 + L2 LINE L2 2968 3269 -3 423 0 0 0 chr3 141471195 141471242 -86053336 + (TG)n Simple_repeat Simple_repeat 2 48 0 297 0 0 0 chr3 141471292 141471325 -86053253 + (TG)n Simple_repeat Simple_repeat 2 34 0 3912 114 38 38 chr3 141472489 141472649 -86051929 + L1MB3 LINE L1 5520 5679 -504 2245 97 7 3 chr3 141472649 141472939 -86051639 - AluSx SINE Alu -21 291 1 3912 114 38 38 chr3 141472939 141473269 -86051309 + L1MB3 LINE L1 5679 6013 -170 1453 82 106 0 chr3 141473269 141473477 -86051101 - MER30 DNA MER1_type 0 230 1 3912 114 38 38 chr3 141473477 141473649 -86050929 + L1MB3 LINE L1 6012 6183 0 375 309 40 6 chr3 141474284 141474459 -86050119 - MIR SINE MIR -81 181 1 2480 67 0 0 chr3 141476644 141476943 -86047635 + L1PA6 LINE L1 5852 6150 -4 535 291 216 35 chr3 141479184 141479586 -86044992 + L3 LINE CR1 993 1467 -110 2308 115 3 0 chr3 141479630 141479935 -86044643 - AluSx SINE Alu -6 306 1 323 292 48 125 chr3 141479986 141480241 -86044337 + L2 LINE L2 1713 1925 -1389 2353 105 3 3 chr3 141480241 141480554 -86044024 - AluSq SINE Alu 0 313 1 323 292 48 125 chr3 141480554 141480713 -86043865 + L2 LINE L2 1925 2095 -1219 875 145 7 20 chr3 141480867 141481019 -86043559 - AluSq/x SINE Alu -162 150 1 768 336 112 45 chr3 141481029 141482270 -86042308 + L2 LINE L2 1945 3272 0 292 316 13 0 chr3 141482266 141482342 -86042236 + L3 LINE CR1 1486 1562 -15 * 909 266 23 19 chr3 141483019 141483275 -86041303 - MIR SINE MIR 0 262 6 443 356 131 0 chr3 141483905 141484127 -86040451 + MIR SINE MIR 5 255 -7 399 229 325 5 chr3 141485375 141485563 -86039015 - MIR SINE MIR -1 261 14 181 256 0 22 chr3 141486169 141486259 -86038319 + (TGG)n Simple_repeat Simple_repeat 3 90 0 195 129 0 0 chr3 141486294 141486325 -86038253 + (TCC)n Simple_repeat Simple_repeat 3 33 0 616 136 24 32 chr3 141487376 141487501 -86037077 + L1MA4 LINE L1 6176 6299 -1 221 346 77 23 chr3 141487794 141487924 -86036654 + MIR SINE MIR 103 239 -23 189 265 29 29 chr3 141489158 141489226 -86035352 - MIR3 SINE MIR -138 70 3 6456 78 4 57 chr3 141490581 141491588 -86032990 - SVA Other Other 0 1386 433 470 281 157 7 chr3 141492593 141492746 -86031832 - MER5A DNA MER1_type 0 189 14 332 130 19 0 chr3 141492770 141492824 -86031754 - MER5A DNA MER1_type -21 168 114 479 293 0 0 chr3 141493027 141493133 -86031445 - MER5A DNA MER1_type -83 106 1 453 311 31 31 chr3 141493188 141493349 -86031229 + MER5B DNA MER1_type 1 161 -17 263 320 56 32 chr3 141494328 141494410 -86030168 + MIR3 SINE MIR 41 128 -80 1914 144 34 0 chr3 141494410 141494702 -86029876 - AluSq SINE Alu -11 302 1 263 320 56 32 chr3 141494702 141494744 -86029834 + MIR3 SINE MIR 128 168 -40 226 293 0 94 chr3 141495343 141495449 -86029129 - MIR SINE MIR -74 188 93 353 302 118 24 chr3 141495526 141495695 -86028883 - MIR3 SINE MIR -21 187 3 1813 161 13 19 chr3 141496782 141497092 -86027486 + AluJo SINE Alu 3 310 -2 4001 213 17 24 chr3 141497159 141498098 -86026480 - L1ME2 LINE L1 -3 6161 5227 378 229 309 21 chr3 141499953 141500141 -86024437 - MIR SINE MIR -16 246 5 231 61 0 0 chr3 141500245 141500278 -86024300 + (CAAAAA)n Simple_repeat Simple_repeat 3 35 0 2061 78 14 14 chr3 141500453 141500734 -86023844 + AluY SINE Alu 1 281 -30 1815 10 0 0 chr3 141500735 141500928 -86023650 + L1PA2 LINE L1 5960 6152 -3 1373 111 11 0 chr3 141500933 141501123 -86023455 + AluSg/x SINE Alu 121 312 0 744 218 0 32 chr3 141501183 141501339 -86023239 + MIR SINE MIR 53 203 -59 1308 149 4 60 chr3 141501440 141501675 -86022903 + AluJb SINE Alu 87 308 -4 1005 110 12 43 chr3 141504001 141504164 -86020414 + L1MA1 LINE L1 6144 6301 -1 21 0 0 0 chr3 141504918 141504939 -86019639 + AT_rich Low_complexity Low_complexity 1 21 0 514 279 112 17 chr3 141505388 141505751 -86018827 + L1MC4a LINE L1 5536 5933 -197 414 85 0 0 chr3 141506631 141506690 -86017888 + (CA)n Simple_repeat Simple_repeat 2 60 0 29 28 0 0 chr3 141506690 141506726 -86017852 + AT_rich Low_complexity Low_complexity 1 36 0 894 119 0 0 chr3 141506726 141506844 -86017734 - FLAM_C SINE Alu -25 118 1 2147 73 0 14 chr3 141507267 141507542 -86017036 - AluY SINE Alu -12 299 29 1822 81 21 8 chr3 141507714 141507994 -86016584 + AluSq SINE Alu 46 328 0 2292 97 3 13 chr3 141508254 141508562 -86016016 - AluSx SINE Alu -7 305 1 404 326 82 26 chr3 141508748 141508981 -86015597 - MIR SINE MIR -7 255 10 2534 81 0 0 chr3 141509186 141509496 -86015082 + AluSx SINE Alu 1 310 -2 206 235 20 0 chr3 141509498 141509549 -86015029 + CT-rich Low_complexity Low_complexity 5 56 0 1849 150 26 20 chr3 141509848 141510154 -86014424 + AluSx SINE Alu 1 308 -4 1695 214 186 5 chr3 141511072 141511465 -86013113 - MLT1C LTR MaLR 0 467 4 203 315 0 0 chr3 141511752 141511806 -86012772 - L2 LINE L2 -2 3270 3217 1464 204 85 13 chr3 141512253 141512571 -86012007 + MER58B DNA MER1_type 1 341 0 1365 139 5 5 chr3 141514663 141514871 -86009707 + MER3 DNA MER1_type 2 209 0 189 0 0 0 chr3 141516052 141516073 -86008505 + (A)n Simple_repeat Simple_repeat 1 21 0 207 255 0 20 chr3 141516533 141516584 -86007994 + L2 LINE L2 3264 3313 0 417 20 0 0 chr3 141517231 141517281 -86007297 + (TG)n Simple_repeat Simple_repeat 1 50 0 223 319 44 22 chr3 141517824 141518006 -86006572 - MIR3 SINE MIR -3 205 20 222 344 8 15 chr3 141518988 141519119 -86005459 + GA-rich Low_complexity Low_complexity 2 131 0 284 100 0 20 chr3 141519135 141519185 -86005393 + (TAGG)n Simple_repeat Simple_repeat 3 51 0 534 239 60 69 chr3 141519313 141519531 -86005047 + MER112 DNA MER1_type 3 218 -42 329 271 150 14 chr3 141519791 141519931 -86004647 - MIR3 SINE MIR -1 207 49 29 0 0 0 chr3 141521286 141521315 -86003263 + AT_rich Low_complexity Low_complexity 1 29 0 418 264 93 0 chr3 141522018 141522158 -86002420 - MER103 DNA DNA -11 155 3 2927 221 23 24 chr3 141522362 141523213 -86001365 + L1MEc LINE L1 2154 2971 -3244 470 264 54 30 chr3 141523241 141523408 -86001170 - MIR SINE MIR -32 230 60 1715 189 118 3 chr3 141526175 141526497 -85998081 - MLT1A1 LTR MaLR -3 362 4 1003 176 5 32 chr3 141526562 141526626 -85997952 - MER20 DNA MER1_type 0 219 155 2392 189 35 18 chr3 141526626 141527082 -85997496 + MLT1C LTR MaLR 3 466 -1 1003 176 5 32 chr3 141527082 141527204 -85997374 - MER20 DNA MER1_type -64 155 38 262 259 9 107 chr3 141527469 141527581 -85996997 + MER5B DNA MER1_type 62 162 -16 291 264 62 114 chr3 141527764 141527991 -85996587 + L1ME4a LINE L1 5719 5933 -188 225 253 53 0 chr3 141528212 141528287 -85996291 + L1ME4a LINE L1 6041 6119 -2 3840 93 15 4 chr3 141528346 141528875 -85995703 + L1MA1 LINE L1 5767 6301 -1 1413 138 0 77 chr3 141528974 141529234 -85995344 + L1MA8 LINE L1 5534 5773 -527 8448 113 31 10 chr3 141529237 141530505 -85994073 + HSMAR2 DNA Mariner 1 1295 -7 2520 134 36 61 chr3 141530506 141531065 -85993513 + L1MA8 LINE L1 5776 6287 -4 234 0 0 0 chr3 141531445 141531471 -85993107 + (TCTCCC)n Simple_repeat Simple_repeat 1 26 0 5142 30 17 207 chr3 141531476 141532500 -85992078 + SVA Other Other 38 866 -520 1290 52 0 28 chr3 141532514 141532726 -85991852 + SVA Other Other 661 866 -520 866 50 6 25 chr3 141532740 141532899 -85991679 + SVA Other Other 661 816 -570 5361 240 85 8 chr3 141532999 141533499 -85991079 - L1MEc LINE L1 -4281 2115 1655 203 61 30 0 chr3 141533499 141533532 -85991046 + (TTTTG)n Simple_repeat Simple_repeat 3 36 0 5361 240 85 8 chr3 141533532 141534587 -85989991 - L1MEc LINE L1 -4741 1655 440 191 313 12 12 chr3 141535103 141535183 -85989395 + L3b LINE CR1 1294 1373 -210 645 314 95 49 chr3 141535766 141536366 -85988212 - L2 LINE L2 0 3272 2643 418 363 60 5 chr3 141536538 141536753 -85987825 - L2 LINE L2 -5 3267 3041 875 272 39 9 chr3 141536849 141537081 -85987497 + MIR SINE MIR 24 262 0 455 255 92 0 chr3 141537288 141537386 -85987192 + MER81 DNA DNA 8 114 0 2484 197 8 34 chr3 141538111 141538589 -85985989 - MLT1C LTR MaLR -1 466 1 506 305 37 18 chr3 141541340 141541504 -85983074 + MIR3 SINE MIR 37 203 -5 24 0 0 0 chr3 141541540 141541564 -85983014 + AT_rich Low_complexity Low_complexity 1 24 0 352 299 73 0 chr3 141541669 141541806 -85982772 - MIR SINE MIR -59 203 57 227 247 26 13 chr3 141541831 141541908 -85982670 + T-rich Low_complexity Low_complexity 5 82 0 441 319 7 21 chr3 141542255 141542397 -85982181 - MIR SINE MIR -67 141 9 246 208 0 0 chr3 141542802 141542855 -85981723 + (TATATG)n Simple_repeat Simple_repeat 3 55 0 211 178 111 0 chr3 141543318 141543363 -85981215 + L2 LINE L2 3261 3310 -3 212 122 24 0 chr3 141543946 141543987 -85980591 + CT-rich Low_complexity Low_complexity 4 45 0 577 283 121 5 chr3 141544354 141544577 -85980001 + L1ME4a LINE L1 5698 5946 -175 1308 149 4 60 chr3 141546861 141547096 -85977482 - AluJb SINE Alu -4 308 87 744 218 0 32 chr3 141547197 141547353 -85977225 - MIR SINE MIR -59 203 53 1361 111 11 0 chr3 141547413 141547603 -85976975 - AluSg/x SINE Alu 0 310 119 1829 5 0 0 chr3 141547608 141547801 -85976777 - L1PA2 LINE L1 -3 6152 5960 2108 124 0 0 chr3 141547802 141548084 -85976494 - AluSx SINE Alu -30 282 1 297 200 59 71 chr3 141548495 141548580 -85975998 - MIR SINE MIR -74 188 105 262 376 22 34 chr3 141548859 141549037 -85975541 - MIR3 SINE MIR -14 194 19 341 253 116 0 chr3 141551342 141551437 -85973141 + MIR3 SINE MIR 93 198 -10 379 288 64 0 chr3 141552814 141552939 -85971639 - MIR SINE MIR -109 153 21 217 214 0 36 chr3 141553348 141553404 -85971174 + L2 LINE L2 3217 3270 -2 2232 92 4 0 chr3 141553924 141554256 -85970322 - AluSx SINE Alu 0 333 1 27 0 0 0 chr3 141555302 141555329 -85969249 + AT_rich Low_complexity Low_complexity 1 27 0 1910 174 0 0 chr3 141556041 141556351 -85968227 + AluJb SINE Alu 1 310 -2 241 219 184 9 chr3 141557285 141557399 -85967179 + L1ME4a LINE L1 5987 6120 -1 286 202 53 53 chr3 141557429 141557523 -85967055 - Charlie7 DNA MER1_type 0 2612 2519 1559 214 120 44 chr3 141557534 141558033 -85966545 - Charlie7 DNA MER1_type -1928 684 148 266 311 22 22 chr3 141558566 141558656 -85965922 - L2 LINE L2 -4 3268 3179 195 194 48 97 chr3 141558812 141558874 -85965704 - L3 LINE CR1 -87 1490 1432 192 263 66 132 chr3 141558916 141559068 -85965510 - L3 LINE CR1 -206 1371 1230 22 0 0 0 chr3 141559522 141559544 -85965034 + AT_rich Low_complexity Low_complexity 1 22 0 328 336 170 13 chr3 141559573 141559885 -85964693 - L3 LINE CR1 -941 636 276 2446 76 7 3 chr3 141560463 141560766 -85963812 - AluY SINE Alu -7 304 1 762 287 11 58 chr3 141561559 141561655 -85962923 + MIR SINE MIR 14 113 -149 2109 109 34 7 chr3 141561655 141561949 -85962629 - AluSx SINE Alu -10 302 1 762 287 11 58 chr3 141561949 141562113 -85962465 + MIR SINE MIR 113 262 0 26 64 0 0 chr3 141562114 141562161 -85962417 + AT_rich Low_complexity Low_complexity 1 47 0 472 125 159 0 chr3 141562516 141562604 -85961974 + U6 snRNA snRNA 1 102 -5 2312 62 41 3 chr3 141562606 141562898 -85961680 - AluY SINE Alu -8 303 1 231 61 0 0 chr3 141563074 141563107 -85961471 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 378 229 309 21 chr3 141563211 141563399 -85961179 + MIR SINE MIR 5 246 -16 4001 213 17 24 chr3 141565254 141566193 -85958385 + L1ME2 LINE L1 5227 6161 -3 1770 164 13 20 chr3 141566261 141566566 -85958012 - AluJo SINE Alu -7 305 3 353 302 118 24 chr3 141567653 141567822 -85956756 + MIR3 SINE MIR 3 187 -21 226 293 0 94 chr3 141567899 141568005 -85956573 + MIR SINE MIR 93 188 -74 263 320 56 32 chr3 141568604 141568646 -85955932 - MIR3 SINE MIR -40 168 128 1914 144 34 0 chr3 141568646 141568938 -85955640 + AluSq SINE Alu 1 302 -11 263 320 56 32 chr3 141568938 141569020 -85955558 - MIR3 SINE MIR -80 128 41 453 311 31 31 chr3 141569999 141570160 -85954418 - MER5B DNA MER1_type -17 161 1 479 293 0 0 chr3 141570215 141570321 -85954257 + MER5A DNA MER1_type 1 106 -83 332 130 19 0 chr3 141570524 141570578 -85954000 + MER5A DNA MER1_type 114 168 -21 470 281 157 7 chr3 141570602 141570755 -85953823 + MER5A DNA MER1_type 14 189 0 402 289 52 21 chr3 141572009 141572168 -85952410 + MIR3 SINE MIR 36 200 -8 23 33 0 0 chr3 141572410 141572440 -85952138 + AT_rich Low_complexity Low_complexity 1 30 0 409 302 37 37 chr3 141572501 141572690 -85951888 + MIR SINE MIR 47 235 -27 270 289 58 58 chr3 141572763 141572867 -85951711 + L2 LINE L2 3165 3268 -4 21 0 0 0 chr3 141572968 141572989 -85951589 + AT_rich Low_complexity Low_complexity 1 21 0 743 207 65 12 chr3 141573071 141573240 -85951338 - MER5B DNA MER1_type 0 178 1 215 225 0 0 chr3 141573309 141573349 -85951229 + GA-rich Low_complexity Low_complexity 5 44 0 589 233 0 0 chr3 141573633 141573762 -85950816 - MER5B DNA MER1_type 0 178 50 976 89 0 22 chr3 141573774 141573909 -85950669 + AluSg/x SINE Alu 164 295 -15 469 183 153 15 chr3 141574135 141574272 -85950306 - MIR SINE MIR -24 238 83 285 348 43 0 chr3 141574370 141574485 -85950093 - L2 LINE L2 -1 3271 3152 397 156 15 118 chr3 141576284 141576419 -85948159 - MIR SINE MIR -56 206 86 241 253 40 30 chr3 141577950 141578049 -85946529 - MLT1J1 LTR MaLR 0 446 347 1757 173 20 10 chr3 141578416 141578716 -85945862 + AluJo SINE Alu 1 303 -9 297 236 142 0 chr3 141578833 141578939 -85945639 - MIR SINE MIR -57 205 85 274 280 92 43 chr3 141579611 141579804 -85944774 - MIR SINE MIR -60 202 2 2113 140 104 2 chr3 141579834 141580227 -85944351 + L1MA5 LINE L1 5864 6296 -4 196 244 0 22 chr3 141582627 141582672 -85941906 - MIR3 SINE MIR -14 194 151 393 285 60 26 chr3 141582731 141582882 -85941696 - MIR SINE MIR -50 212 57 398 231 202 40 chr3 141583202 141583375 -85941203 - MIR SINE MIR -55 207 7 190 346 40 40 chr3 141584841 141584942 -85939636 - L2 LINE L2 -29 3284 3184 1981 146 3 17 chr3 141586951 141587253 -85937325 + AluSx SINE Alu 1 298 -14 204 133 50 0 chr3 141588047 141588107 -85936471 + (TAAA)n Simple_repeat Simple_repeat 2 64 0 1764 157 19 41 chr3 141588132 141588450 -85936128 + AluJo SINE Alu 1 311 -1 354 173 14 62 chr3 141589631 141589748 -85934830 - MLT1F LTR MaLR 0 529 350 293 226 120 45 chr3 141589913 141590046 -85934532 - MLT1I LTR MaLR -266 143 1 1745 200 38 68 chr3 141590569 141591038 -85933540 + L1M4 LINE L1 4548 5002 -1144 197 217 0 22 chr3 141591085 141591131 -85933447 + MIR SINE MIR 86 130 -78 2338 110 0 0 chr3 141592289 141592598 -85931980 + AluSx SINE Alu 1 309 -3 453 137 76 12 chr3 141592735 141592864 -85931714 + MER2 DNA MER2_type 12 210 -135 370 240 13 0 chr3 141592892 141592967 -85931611 + MER2 DNA MER2_type 270 345 0 284 241 209 25 chr3 141593508 141593666 -85930912 + L2 LINE L2 2153 2339 -975 432 168 30 0 chr3 141593982 141594083 -85930495 + CT-rich Low_complexity Low_complexity 2 105 0 339 25 0 0 chr3 141594083 141594123 -85930455 + (CA)n Simple_repeat Simple_repeat 1 40 0 48 32 0 0 chr3 141595465 141595527 -85929051 + AT_rich Low_complexity Low_complexity 1 62 0 710 284 15 5 chr3 141596425 141596626 -85927952 + AluJo SINE Alu 1 203 -109 1082 170 0 0 chr3 141596751 141596922 -85927656 + AluJb SINE Alu 142 312 0 414 255 0 0 chr3 141597446 141597548 -85927030 + MER3 DNA MER1_type 107 208 -1 426 250 19 0 chr3 141597690 141597794 -85926784 + MER5A DNA MER1_type 4 109 -80 1717 171 7 0 chr3 141597802 141598077 -85926501 + AluJo SINE Alu 34 310 -2 305 271 31 47 chr3 141599443 141599572 -85925006 - MLT1H LTR MaLR -394 155 29 1895 138 32 32 chr3 141599583 141599895 -85924683 + AluJb SINE Alu 1 312 0 523 243 53 101 chr3 141600120 141600309 -85924269 + MIR SINE MIR 14 193 -69 180 328 83 59 chr3 141603485 141603738 -85920840 + L2 LINE L2 2804 3062 -210 4100 162 15 7 chr3 141604654 141605372 -85919206 - L1MB7 LINE L1 -67 6117 5394 2074 123 3 10 chr3 141605632 141605933 -85918645 - AluSq SINE Alu -14 299 1 191 188 21 0 chr3 141606323 141606371 -85918207 + GA-rich Low_complexity Low_complexity 4 52 0 310 309 135 8 chr3 141607389 141607515 -85917063 - L2 LINE L2 0 3313 3172 242 274 137 32 chr3 141609318 141609442 -85915136 + MIR3 SINE MIR 1 137 -71 881 221 45 10 chr3 141609598 141609681 -85914897 - MIR SINE MIR -15 247 168 1935 159 26 40 chr3 141609681 141610027 -85914551 - MER2 DNA MER2_type -3 341 1 881 221 45 10 chr3 141610027 141610142 -85914436 - MIR SINE MIR -94 168 42 2389 97 0 10 chr3 141612135 141612443 -85912135 - AluSx SINE Alu -7 305 1 630 209 7 22 chr3 141612558 141612697 -85911881 + MIR SINE MIR 112 248 -14 503 259 26 0 chr3 141613916 141614032 -85910546 + MER5A DNA MER1_type 70 188 -1 514 254 32 0 chr3 141614065 141614191 -85910387 - MER5B DNA MER1_type -48 130 1 203 273 121 71 chr3 141614510 141614609 -85909969 - L2 LINE L2 -1 3271 3168 2669 43 0 0 chr3 141615941 141616245 -85908333 - AluY SINE Alu -7 304 1 24 0 0 0 chr3 141616580 141616604 -85907974 + AT_rich Low_complexity Low_complexity 1 24 0 2105 173 20 33 chr3 141616743 141617199 -85907379 - L1MB7 LINE L1 -2 6182 5733 405 222 0 12 chr3 141617200 141617281 -85907297 - L1MB7 LINE L1 -505 5679 5600 212 261 0 0 chr3 141617283 141617329 -85907249 + L2 LINE L2 2604 2649 -665 2151 117 3 7 chr3 141617404 141617729 -85906849 - AluJo SINE Alu 0 312 1 192 329 90 17 chr3 141618238 141618462 -85906116 - L2 LINE L2 -614 2700 2412 2141 129 0 3 chr3 141619492 141619787 -85904791 + AluSx SINE Alu 2 295 -17 2034 142 26 0 chr3 141621040 141621342 -85903236 + AluSx SINE Alu 1 310 -2 21 0 0 0 chr3 141621788 141621809 -85902769 + AT_rich Low_complexity Low_complexity 1 21 0 2243 122 0 0 chr3 141621816 141622112 -85902466 + AluSx SINE Alu 1 296 -16 447 318 32 13 chr3 141623659 141623813 -85900765 + MIR3 SINE MIR 3 159 -49 232 233 0 0 chr3 141624186 141624229 -85900349 + (GGTTG)n Simple_repeat Simple_repeat 4 46 0 180 125 0 0 chr3 141624910 141624942 -85899636 + (CA)n Simple_repeat Simple_repeat 1 32 0 707 94 0 68 chr3 141624971 141625088 -85899490 - L1MB3 LINE L1 0 6183 6075 2138 89 0 0 chr3 141625280 141625551 -85899027 + AluSx SINE Alu 38 308 -4 829 181 22 55 chr3 141625921 141626103 -85898475 + MER5A DNA MER1_type 9 184 -5 1414 176 42 0 chr3 141626204 141626442 -85898136 + AluJo SINE Alu 1 248 -64 23 0 0 0 chr3 141626442 141626465 -85898113 + AT_rich Low_complexity Low_complexity 1 23 0 190 327 0 0 chr3 141629275 141629330 -85895248 - L2 LINE L2 -8 3305 3251 255 222 0 32 chr3 141630921 141630984 -85893594 + (CATA)n Simple_repeat Simple_repeat 2 62 0 2013 132 26 7 chr3 141631672 141631976 -85892602 + AluSx SINE Alu 1 310 -2 525 131 0 0 chr3 141632171 141632255 -85892323 + (TA)n Simple_repeat Simple_repeat 1 84 0 438 294 95 2 chr3 141634228 141634379 -85890199 - MIR3 SINE MIR -62 146 5 184 293 0 0 chr3 141634474 141634515 -85890063 - L2 LINE L2 -27 3245 3205 324 296 113 14 chr3 141634553 141634695 -85889883 + L2 LINE L2 3117 3272 0 350 243 134 7 chr3 141635487 141635622 -85888956 + MIR SINE MIR 36 191 -71 460 221 16 16 chr3 141635910 141636032 -85888546 - L1MC4 LINE L1 -968 7074 6953 412 294 176 71 chr3 141636032 141636593 -85887985 - L3 LINE CR1 -312 1265 646 261 318 57 0 chr3 141638019 141638107 -85886471 - L2 LINE L2 -31 3282 3190 335 251 111 17 chr3 141638407 141638706 -85885872 - LTR16A1 LTR ERVL -3 454 1 336 325 101 0 chr3 141638729 141638917 -85885661 + MIR SINE MIR 20 226 -36 375 296 151 26 chr3 141640448 141640600 -85883978 - MIR3 SINE MIR 0 208 38 1784 171 26 13 chr3 141641571 141641875 -85882703 + AluJb SINE Alu 5 312 0 363 260 0 10 chr3 141643128 141643224 -85881354 - L2 LINE L2 -4 3309 3215 23 33 0 0 chr3 141644195 141644225 -85880353 + AT_rich Low_complexity Low_complexity 1 30 0 2048 247 64 57 chr3 141644349 141645342 -85879236 - L1ME3A LINE L1 0 6170 5177 2189 117 3 3 chr3 141645429 141645727 -85878851 - AluSx SINE Alu -14 298 1 292 239 23 34 chr3 141647159 141647247 -85877331 - L2 LINE L2 -3 3310 3224 199 285 51 51 chr3 141647484 141647621 -85876957 + L2 LINE L2 2258 2394 -920 2114 132 0 10 chr3 141648589 141648900 -85875678 + AluSg SINE Alu 1 308 -2 260 283 0 0 chr3 141648925 141648985 -85875593 + (TATG)n Simple_repeat Simple_repeat 1 60 0 282 227 173 0 chr3 141648985 141649060 -85875518 + L1ME4a LINE L1 5935 6022 -99 728 243 75 1 chr3 141650718 141650919 -85873659 - MIR SINE MIR -15 247 34 791 285 77 4 chr3 141652476 141652711 -85871867 + MIR SINE MIR 9 260 -2 22 0 0 0 chr3 141652853 141652875 -85871703 + AT_rich Low_complexity Low_complexity 1 22 0 2275 90 0 37 chr3 141653013 141653335 -85871243 - AluSg SINE Alu 0 310 1 587 188 42 55 chr3 141655384 141655549 -85869029 + L1MC5 LINE L1 7763 7925 -36 798 104 0 89 chr3 141656726 141656861 -85867717 + MER1B DNA MER1_type 217 339 0 264 315 203 0 chr3 141657039 141657182 -85867396 - MIR SINE MIR -71 191 20 321 261 254 8 chr3 141657430 141657564 -85867014 - L2 LINE L2 0 3272 3106 453 241 110 55 chr3 141657576 141657721 -85866857 - MIR3 SINE MIR -25 183 31 863 207 115 19 chr3 141658083 141658344 -85866234 - L2 LINE L2 0 3313 3028 225 212 0 15 chr3 141658378 141658444 -85866134 - L1MC4 LINE L1 -1337 6705 6641 281 153 0 17 chr3 141658497 141658556 -85866022 + (TA)n Simple_repeat Simple_repeat 1 58 0 991 194 39 0 chr3 141658782 141658962 -85865616 - MER5A DNA MER1_type -1 188 2 1842 146 7 11 chr3 141662511 141662823 -85861755 + AluJo SINE Alu 1 311 0 753 240 46 10 chr3 141663112 141663308 -85861270 - L2 LINE L2 0 3313 3111 433 239 9 18 chr3 141663370 141663483 -85861095 - L2 LINE L2 -3175 139 28 2129 113 23 0 chr3 141663547 141663848 -85860730 + AluY SINE Alu 1 308 -3 439 191 0 12 chr3 141665348 141665432 -85859146 + L2 LINE L2 3199 3281 -32 1569 151 38 4 chr3 141666644 141666883 -85857695 - AluJo SINE Alu -45 267 21 214 205 0 0 chr3 141666903 141666942 -85857636 + (TAA)n Simple_repeat Simple_repeat 1 39 0 552 298 132 61 chr3 141667108 141667487 -85857091 - MLT1I LTR MaLR 0 409 4 2577 108 101 0 chr3 141667678 141668066 -85856512 - MSTA LTR MaLR -1 427 1 202 385 13 0 chr3 141668626 141668704 -85855874 + MIR SINE MIR 23 101 -107 2044 137 20 3 chr3 141668743 141669043 -85855535 + AluSx SINE Alu 1 305 -7 37 62 0 0 chr3 141669202 141669267 -85855311 + AT_rich Low_complexity Low_complexity 1 65 0 24 41 0 20 chr3 141669296 141669326 -85855252 + AT_rich Low_complexity Low_complexity 1 31 -17 810 152 0 36 chr3 141669326 141669464 -85855114 + FLAM_C SINE Alu 1 133 0 24 41 0 20 chr3 141669464 141669482 -85855096 + AT_rich Low_complexity Low_complexity 31 48 0 1705 187 0 22 chr3 141669579 141669894 -85854684 + AluJb SINE Alu 1 308 -4 234 325 26 0 chr3 141670003 141670080 -85854498 + MLT1F1 LTR MaLR 46 124 -443 1987 133 111 38 chr3 141670080 141670478 -85854100 + L1MC3 LINE L1 7189 7615 -170 1957 108 0 0 chr3 141670493 141670770 -85853808 + L1PA8 LINE L1 5893 6169 -3 192 323 62 19 chr3 141670775 141670936 -85853642 - L2 LINE L2 -2283 1031 864 775 249 44 35 chr3 141670940 141671169 -85853409 + L1MEc LINE L1 30 260 -6136 557 225 35 14 chr3 141671159 141671301 -85853277 + L1MEc LINE L1 519 663 -5733 * 28 0 0 0 chr3 141671315 141671343 -85853235 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr3 141671439 141671472 -85853106 + AT_rich Low_complexity Low_complexity 1 33 0 1197 243 99 39 chr3 141671942 141672407 -85852171 - MLT1J LTR MaLR -16 495 3 2383 108 0 0 chr3 141672416 141672721 -85851857 - AluSq SINE Alu -8 305 1 2201 120 0 0 chr3 141673270 141673561 -85851017 - AluSx SINE Alu -21 291 1 228 233 22 139 chr3 141673745 141673925 -85850653 - L2 LINE L2 -224 3048 2890 369 75 0 0 chr3 141674459 141674512 -85850066 + (TG)n Simple_repeat Simple_repeat 1 53 0 212 29 0 59 chr3 141674512 141674546 -85850032 + (CAGAGA)n Simple_repeat Simple_repeat 2 33 0 748 175 0 0 chr3 141674781 141674895 -85849683 + FLAM_C SINE Alu 2 115 -28 636 193 140 41 chr3 141675282 141675453 -85849125 - MER5A DNA MER1_type -1 188 1 1448 109 0 28 chr3 141676436 141676647 -85847931 - AluSg/x SINE Alu 0 312 108 1676 177 23 3 chr3 141676939 141677239 -85847339 + AluJo SINE Alu 1 306 -6 732 188 0 8 chr3 141677246 141677379 -85847199 + FLAM_C SINE Alu 1 132 -1 33 0 0 0 chr3 141677379 141677412 -85847166 + AT_rich Low_complexity Low_complexity 1 33 0 210 71 0 0 chr3 141677554 141677582 -85846996 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1441 187 22 29 chr3 141678074 141678347 -85846231 - AluJb SINE Alu -22 290 20 645 239 68 0 chr3 141679727 141679890 -85844688 - L2 LINE L2 -4 3309 3136 228 188 0 0 chr3 141679894 141679963 -85844615 + (TA)n Simple_repeat Simple_repeat 1 69 0 2022 113 17 0 chr3 141679975 141680266 -85844312 - AluSx SINE Alu -16 296 1 2604 178 76 33 chr3 141680917 141680944 -85843634 + MLT1F1 LTR MaLR 1 25 -542 2406 61 0 0 chr3 141680944 141681240 -85843338 + AluY SINE Alu 1 296 -15 2604 178 76 33 chr3 141681240 141681752 -85842826 + MLT1F1 LTR MaLR 25 563 -4 333 235 24 12 chr3 141681776 141681861 -85842717 + MIR3 SINE MIR 86 171 -37 231 250 405 9 chr3 141682153 141682269 -85842309 - MIR SINE MIR -50 212 51 24 32 0 0 chr3 141682331 141682362 -85842216 + AT_rich Low_complexity Low_complexity 1 31 0 438 111 0 0 chr3 141682554 141682617 -85841961 - AluS SINE Alu -21 291 229 1747 139 14 30 chr3 141682647 141682942 -85841636 - AluSx SINE Alu -22 290 1 2232 115 0 0 chr3 141683067 141683379 -85841199 - AluSx SINE Alu 0 312 1 561 263 105 18 chr3 141683843 141684014 -85840564 + MIR3 SINE MIR 23 208 0 1696 122 14 38 chr3 141684328 141684615 -85839963 + AluSx SINE Alu 1 280 -32 898 153 83 0 chr3 141684628 141684785 -85839793 + AluJb SINE Alu 129 298 -14 401 268 43 43 chr3 141685539 141685677 -85838901 + MIR3 SINE MIR 3 140 -68 235 323 11 43 chr3 141687540 141687726 -85836852 + CT-rich Low_complexity Low_complexity 1 180 0 481 266 150 0 chr3 141688122 141688295 -85836283 + MIR3 SINE MIR 10 208 0 390 222 0 0 chr3 141688632 141688704 -85835874 + MER5A DNA MER1_type 1 72 -117 1216 113 35 70 chr3 141688705 141688934 -85835644 + AluSg/x SINE Alu 83 303 -7 1535 32 5 0 chr3 141688944 141689131 -85835447 + AluY SINE Alu 120 307 -4 904 193 0 12 chr3 141689134 141689295 -85835283 + AluJo/FRAM SINE Alu 137 295 -7 1402 169 54 22 chr3 141689306 141689584 -85834994 + AluJb SINE Alu 1 287 -25 23 0 0 0 chr3 141689587 141689610 -85834968 + AT_rich Low_complexity Low_complexity 1 23 0 498 202 132 0 chr3 141689613 141689727 -85834851 + MER5A DNA MER1_type 61 189 0 205 255 39 88 chr3 141690306 141690408 -85834170 + MIR SINE MIR 165 261 -1 1861 149 0 13 chr3 141691118 141691419 -85833159 + AluJb SINE Alu 1 297 -15 825 216 18 0 chr3 141691962 141692133 -85832445 + MER5B DNA MER1_type 5 178 0 275 306 74 0 chr3 141692135 141692243 -85832335 - MIR3 SINE MIR -50 158 43 508 196 60 30 chr3 141692564 141692697 -85831881 + MER5B DNA MER1_type 1 137 -41 1035 200 0 0 chr3 141692712 141692902 -85831676 + AluJo SINE Alu 121 310 -2 213 167 0 0 chr3 141692906 141692942 -85831636 + MER5A DNA MER1_type 154 189 0 5091 135 39 14 chr3 141693013 141693881 -85830697 + L1MB3 LINE L1 5254 6143 -40 560 282 208 9 chr3 141694342 141694558 -85830020 - MIR SINE MIR 0 262 4 714 322 58 4 chr3 141695729 141695971 -85828607 - L3 LINE CR1 -12 1565 1311 440 114 0 0 chr3 141696580 141696650 -85827928 - AluJo SINE Alu -2 310 241 1168 141 0 6 chr3 141696650 141696827 -85827751 - AluJo SINE Alu -136 176 1 581 133 0 0 chr3 141696969 141697059 -85827519 + Alu SINE Alu 215 304 -7 37 62 0 0 chr3 141697218 141697283 -85827295 + AT_rich Low_complexity Low_complexity 1 65 0 24 41 0 20 chr3 141697312 141697342 -85827236 + AT_rich Low_complexity Low_complexity 1 31 -17 812 152 0 36 chr3 141697342 141697480 -85827098 + AluJo SINE Alu 1 133 -169 24 41 0 20 chr3 141697480 141697498 -85827080 + AT_rich Low_complexity Low_complexity 31 48 0 1630 169 16 22 chr3 141697595 141697909 -85826669 + AluSx SINE Alu 1 312 0 258 336 10 48 chr3 141698086 141698190 -85826388 + MIR SINE MIR 88 187 -75 263 274 63 42 chr3 141698316 141698330 -85826248 + MIR SINE MIR 19 31 -231 1601 149 11 7 chr3 141698330 141698599 -85825979 + AluJo SINE Alu 21 290 -22 263 274 63 42 chr3 141698599 141698679 -85825899 + MIR SINE MIR 31 115 -147 629 229 97 0 chr3 141698679 141698823 -85825755 + AluJo SINE Alu 131 288 -24 924 145 0 25 chr3 141699051 141699210 -85825368 - AluJb SINE Alu -10 302 148 891 246 170 37 chr3 141700917 141701037 -85823541 + L2 LINE L2 2728 2831 -482 1831 218 61 35 chr3 141701037 141701527 -85823051 - MLT1D LTR MaLR 0 505 3 891 246 170 37 chr3 141701527 141701921 -85822657 + L2 LINE L2 2831 3304 -9 1375 185 104 0 chr3 141703158 141703443 -85821135 + AluJo SINE Alu 1 312 0 260 196 0 0 chr3 141704109 141704155 -85820423 - MER5B DNA MER1_type -2 176 131 1089 139 6 0 chr3 141704157 141704329 -85820249 + AluSg/x SINE Alu 120 292 -18 1158 292 80 52 chr3 141705084 141705598 -85818980 - MLT1K LTR MaLR -48 540 13 1122 169 22 0 chr3 141705611 141705795 -85818783 + MER5A DNA MER1_type 2 189 0 406 260 29 0 chr3 141705803 141705907 -85818671 + MER5B DNA MER1_type 1 107 -71 501 258 73 0 chr3 141706200 141706324 -85818254 + L2 LINE L2 3140 3272 0 831 127 0 0 chr3 141706372 141706490 -85818088 + FLAM_C SINE Alu 1 118 -15 234 0 0 0 chr3 141706494 141706520 -85818058 + (TAA)n Simple_repeat Simple_repeat 2 27 0 226 129 0 0 chr3 141706753 141706784 -85817794 + Alu SINE Alu 1 31 -102 1165 118 6 0 chr3 141706784 141706953 -85817625 + AluSg/x SINE Alu 126 295 -15 2346 92 0 0 chr3 141707566 141707869 -85816709 - AluSx SINE Alu -9 303 1 374 261 115 15 chr3 141708115 141708245 -85816333 + MIR SINE MIR 120 262 0 1309 183 14 64 chr3 141708337 141708632 -85815946 - AluJb SINE Alu -32 280 1 259 313 0 31 chr3 141709177 141709273 -85815305 - MLT1K LTR MaLR -480 108 16 620 130 65 0 chr3 141709287 141709395 -85815183 + MER5A DNA MER1_type 2 116 -73 700 178 0 67 chr3 141709426 141709561 -85815017 + FLAM_C SINE Alu 1 126 -7 438 319 21 0 chr3 141709578 141709719 -85814859 - MIR SINE MIR -87 175 32 1782 152 40 0 chr3 141713247 141713543 -85811035 - AluJo SINE Alu -4 308 1 2089 110 0 3 chr3 141713983 141714275 -85810303 - AluSx SINE Alu -21 291 1 1692 151 14 0 chr3 141714885 141715164 -85809414 + AluJo SINE Alu 23 305 -7 821 261 0 6 chr3 141715277 141715453 -85809125 + MER8 DNA MER2_type 1 175 -64 252 261 15 0 chr3 141715430 141715495 -85809083 + MER2 DNA MER2_type 280 345 0 * 191 88 29 0 chr3 141715549 141715583 -85808995 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr3 141715996 141716025 -85808553 + AT_rich Low_complexity Low_complexity 1 29 0 283 86 0 0 chr3 141716174 141716209 -85808369 - U2 snRNA snRNA -153 35 1 2104 131 0 6 chr3 141716969 141717281 -85807297 + AluSx SINE Alu 1 310 -2 447 264 163 26 chr3 141718346 141718766 -85805812 + L1MC/D LINE L1 5176 5654 -814 1647 144 47 0 chr3 141719327 141719583 -85804995 - AluSx SINE Alu -39 273 6 1719 155 16 10 chr3 141719686 141719990 -85804588 - AluJb SINE Alu -6 306 1 280 405 16 0 chr3 141720433 141720559 -85804019 - MIR3 SINE MIR -21 187 60 297 180 33 0 chr3 141721508 141721569 -85803009 - MIR SINE MIR -97 165 103 559 205 43 68 chr3 141721724 141721885 -85802693 - L2 LINE L2 -11 3302 3146 2153 166 119 21 chr3 141721935 141722405 -85802173 - MER74A LTR ERVL -42 516 1 1450 166 13 58 chr3 141722418 141722726 -85801852 + AluJo SINE Alu 6 299 -13 432 325 28 24 chr3 141722726 141722938 -85801640 - L2 LINE L2 -158 3155 2943 986 310 46 41 chr3 141723328 141723708 -85800870 + L2 LINE L2 2719 3095 -218 189 0 0 0 chr3 141723708 141723729 -85800849 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 1896 123 0 14 chr3 141723729 141723877 -85800701 - AluSx SINE Alu -32 280 136 2321 93 3 0 chr3 141723877 141724187 -85800391 - AluSp SINE Alu -1 312 2 1896 123 0 14 chr3 141724187 141724322 -85800256 - AluSx SINE Alu -176 136 1 986 310 46 41 chr3 141724322 141724535 -85800043 + L2 LINE L2 3094 3313 0 1603 176 33 0 chr3 141725922 141726244 -85798334 - AluJb SINE Alu 0 331 1 1688 162 6 35 chr3 141726244 141726557 -85798021 - AluJo SINE Alu -7 305 1 1649 199 306 2 chr3 141726820 141727343 -85797235 + L1MC4 LINE L1 7361 8042 0 420 184 102 0 chr3 141728209 141728307 -85796271 - MER103 DNA DNA -4 162 55 2392 70 0 0 chr3 141728369 141728667 -85795911 + AluY SINE Alu 1 298 -13 1872 152 0 7 chr3 141728734 141729036 -85795542 + AluJb SINE Alu 1 300 -12 1001 225 11 0 chr3 141729302 141729484 -85795094 - MER5A DNA MER1_type 0 189 6 2360 66 0 22 chr3 141729773 141730091 -85794487 - AluY SINE Alu 0 311 1 2808 179 29 68 chr3 141730710 141731146 -85793432 - L1MA9 LINE L1 -280 6032 5628 2238 129 3 0 chr3 141731146 141731456 -85793122 - AluSq SINE Alu -2 311 1 2808 179 29 68 chr3 141731456 141731669 -85792909 - L1MA9 LINE L1 -684 5628 5408 1843 146 3 17 chr3 141731755 141732073 -85792505 - AluJo SINE Alu 0 314 1 406 138 11 11 chr3 141734731 141734818 -85789760 + CT-rich Low_complexity Low_complexity 2 88 0 660 129 61 95 chr3 141734821 141734968 -85789610 - FLAM_C SINE Alu 0 143 2 3045 68 45 45 chr3 141734999 141735070 -85789508 - MLT2A1 LTR ERVL 0 444 374 261 0 0 0 chr3 141735070 141735099 -85789479 + (CA)n Simple_repeat Simple_repeat 2 30 0 3045 68 45 45 chr3 141735099 141735471 -85789107 - MLT2A1 LTR ERVL -69 375 1 3422 141 13 25 chr3 141735633 141736186 -85788392 + MER44D DNA MER2_type 5 605 0 539 239 53 48 chr3 141736744 141736932 -85787646 - MIR SINE MIR -13 249 61 338 128 85 117 chr3 141737086 141737110 -85787468 + MER5C DNA MER1_type 234 257 -67 779 145 7 65 chr3 141737110 141737248 -85787330 + FLAM_C SINE Alu 1 130 -3 338 128 85 117 chr3 141737248 141737317 -85787261 + MER5C DNA MER1_type 257 324 0 392 254 91 53 chr3 141737391 141737469 -85787109 + L1ME3A LINE L1 5740 5814 -356 2224 125 0 0 chr3 141737469 141737765 -85786813 + AluSx SINE Alu 1 296 -16 392 254 91 53 chr3 141737765 141737895 -85786683 + L1ME3A LINE L1 5814 5956 -214 1046 129 0 6 chr3 141739810 141739988 -85784590 + (TCCC)n Simple_repeat Simple_repeat 2 178 0 849 156 0 22 chr3 141739988 141740168 -85784410 + CT-rich Low_complexity Low_complexity 1 176 0 1549 189 25 44 chr3 141740182 141740560 -85784018 - AluSx SINE Alu 0 372 1 261 98 0 0 chr3 141741469 141741510 -85783068 + (TC)n Simple_repeat Simple_repeat 2 42 0 1139 101 0 0 chr3 141742051 141742232 -85782346 - AluSg/x SINE Alu 0 316 136 603 271 52 10 chr3 141742251 141742443 -85782135 + MIR SINE MIR 33 232 -30 207 0 0 0 chr3 141742500 141742523 -85782055 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 2690 246 148 19 chr3 141742560 141743899 -85780679 + L2 LINE L2 1784 3269 -44 306 341 89 16 chr3 141744701 141744947 -85779631 + L3 LINE CR1 1189 1452 -125 198 0 0 0 chr3 141745307 141745329 -85779249 + (TG)n Simple_repeat Simple_repeat 2 23 0 392 267 48 53 chr3 141747488 141747694 -85776884 - L1ME LINE L1 -303 5818 5614 358 206 109 0 chr3 141750414 141750506 -85774072 + Charlie7 DNA MER1_type 1 102 -2510 * 492 203 92 18 chr3 141750490 141750653 -85773925 + Charlie7 DNA MER1_type 2438 2612 0 383 356 30 15 chr3 141750752 141750954 -85773624 + L2 LINE L2 2865 3069 -203 209 94 0 0 chr3 141751369 141751401 -85773177 + L2 LINE L2 3279 3310 -3 573 279 98 77 chr3 141751772 141751946 -85772632 + L3 LINE CR1 902 1071 -506 2295 110 10 0 chr3 141751946 141752254 -85772324 - AluSx SINE Alu -1 311 1 573 279 98 77 chr3 141752254 141752548 -85772030 + L3 LINE CR1 1071 1380 -197 275 300 50 30 chr3 141753152 141753252 -85771326 + MIR SINE MIR 36 137 -71 1996 123 10 13 chr3 141753670 141753970 -85770608 + AluSx SINE Alu 1 299 -13 217 211 0 0 chr3 141753973 141754011 -85770567 + polypurine Low_complexity Low_complexity 2 39 0 2278 87 3 26 chr3 141754477 141754787 -85769791 - AluSp SINE Alu -10 303 1 761 204 0 0 chr3 141754840 141754982 -85769596 - FLAM_C SINE Alu 0 143 2 1483 172 8 31 chr3 141755163 141755424 -85769154 - AluJo SINE Alu -23 289 35 559 238 14 26 chr3 141755441 141755606 -85768972 - L1MA9 LINE L1 -2 6289 6132 2665 197 39 47 chr3 141755666 141755993 -85768585 - L1MA9 LINE L1 -174 6138 5810 7386 49 6 9 chr3 141755993 141757281 -85767297 - L1PA7 LINE L1 0 6154 4873 2665 197 39 47 chr3 141757281 141757298 -85767280 - L1MA9 LINE L1 -502 5810 5794 297 0 0 0 chr3 141757298 141757331 -85767247 + (TC)n Simple_repeat Simple_repeat 2 34 0 2665 197 39 47 chr3 141757331 141757651 -85766927 - L1MA9 LINE L1 -518 5794 5478 2326 117 0 0 chr3 141758053 141758362 -85766216 - AluSx SINE Alu -3 309 1 23 0 0 0 chr3 141758370 141758393 -85766185 + AT_rich Low_complexity Low_complexity 1 23 0 769 164 15 8 chr3 141758743 141758877 -85765701 - AluJo SINE Alu -176 136 2 295 279 58 12 chr3 141759315 141759401 -85765177 + L2 LINE L2 3209 3298 -15 1695 169 48 4 chr3 141761163 141761281 -85763297 + AluJb SINE Alu 1 112 -200 243 0 0 0 chr3 141761281 141761308 -85763270 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1695 169 48 4 chr3 141761308 141761462 -85763116 + AluJb SINE Alu 112 285 -27 423 0 0 0 chr3 141761462 141761509 -85763069 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 872 134 0 0 chr3 141761513 141761678 -85762900 + FLAM_C SINE Alu 1 165 0 1990 164 3 0 chr3 141763296 141763607 -85760971 - AluJo SINE Alu 0 312 1 2412 69 0 3 chr3 141764255 141764546 -85760032 - AluY SINE Alu -21 290 1 530 264 190 45 chr3 141765004 141765341 -85759237 - L2 LINE L2 -1 3312 2927 404 241 75 33 chr3 141766358 141766517 -85758061 + MIR SINE MIR 4 167 -67 2564 64 0 3 chr3 141767998 141768309 -85756269 + AluY SINE Alu 1 310 -1 194 290 11 65 chr3 141768614 141768707 -85755871 + MIR SINE MIR 79 166 -96 1834 157 3 13 chr3 141769541 141769846 -85754732 + AluJb SINE Alu 1 302 -10 239 133 78 11 chr3 141771526 141771616 -85752962 + (TA)n Simple_repeat Simple_repeat 1 96 0 1914 161 0 3 chr3 141771616 141771902 -85752676 - AluJo SINE Alu -27 285 1 2205 135 3 0 chr3 141772069 141772380 -85752198 + AluSx SINE Alu 1 312 0 1264 154 8 39 chr3 141773860 141774094 -85750484 - AluJb SINE Alu -1 311 85 1686 170 90 75 chr3 141774383 141774631 -85749947 - MLT1C LTR MaLR -6 461 201 2178 88 46 3 chr3 141774631 141774916 -85749662 - AluSp SINE Alu -16 297 1 1686 170 90 75 chr3 141774916 141775121 -85749457 - MLT1C LTR MaLR -266 201 1 339 65 0 0 chr3 141775999 141776045 -85748533 + (TG)n Simple_repeat Simple_repeat 1 46 0 2377 88 0 0 chr3 141776078 141776372 -85748206 - AluSg SINE Alu -16 294 1 33 25 0 0 chr3 141777088 141777128 -85747450 + AT_rich Low_complexity Low_complexity 1 40 0 1997 145 3 0 chr3 141777134 141777423 -85747155 - AluSx SINE Alu -18 294 5 513 0 0 0 chr3 141779707 141779764 -85744814 + (CA)n Simple_repeat Simple_repeat 2 58 0 684 274 65 0 chr3 141780670 141780871 -85743707 - MIR SINE MIR 0 262 49 1990 156 14 40 chr3 141781349 141781628 -85742950 + MER2 DNA MER2_type 1 271 -73 2140 114 0 43 chr3 141781628 141781953 -85742625 - AluSx SINE Alu -1 311 1 1990 156 14 40 chr3 141781953 141782026 -85742552 + MER2 DNA MER2_type 271 344 0 2041 114 7 4 chr3 141783636 141783917 -85740661 - AluSx SINE Alu -30 282 1 446 235 0 10 chr3 141784411 141784513 -85740065 + MIR SINE MIR 31 131 -77 1646 167 33 30 chr3 141784772 141785072 -85739506 + AluJo SINE Alu 1 301 -11 492 167 27 24 chr3 141785091 141785388 -85739190 + (TATATG)n Simple_repeat Simple_repeat 1 298 0 198 0 0 0 chr3 141786747 141786769 -85737809 + (TA)n Simple_repeat Simple_repeat 2 23 0 194 150 25 0 chr3 141787238 141787278 -85737300 + CT-rich Low_complexity Low_complexity 2 42 0 1990 140 17 3 chr3 141793365 141793665 -85730913 - AluSx SINE Alu -8 304 1 1087 116 19 53 chr3 141795677 141795884 -85728694 - L1MB4 LINE L1 -1 6179 5980 228 320 134 0 chr3 141796211 141796308 -85728270 + MIR SINE MIR 22 131 -77 451 189 0 32 chr3 141798031 141798126 -85726452 - MIR SINE MIR -81 181 90 180 370 43 0 chr3 141798251 141798389 -85726189 - L2 LINE L2 -358 2955 2812 1913 167 3 3 chr3 141798538 141798850 -85725728 - AluJb SINE Alu 0 312 1 439 255 60 72 chr3 141799323 141799649 -85724929 + L1M4 LINE L1 2631 2954 -3192 1624 180 10 10 chr3 141799764 141800064 -85724514 + AluJo SINE Alu 1 300 -12 1573 164 50 37 chr3 141800939 141801238 -85723340 - AluJb SINE Alu -9 303 1 251 304 38 0 chr3 141801818 141801897 -85722681 - L2 LINE L2 -1 3271 3190 24 32 0 0 chr3 141801925 141801956 -85722622 + AT_rich Low_complexity Low_complexity 1 31 0 204 354 15 0 chr3 141801958 141802023 -85722555 - L2 LINE L2 -71 3201 3136 500 104 0 0 chr3 141802519 141802586 -85721992 - AluS SINE Alu -242 71 5 354 286 50 17 chr3 141802715 141802834 -85721744 - L2 LINE L2 -4 3268 3146 2277 104 3 7 chr3 141802884 141803193 -85721385 + AluSp SINE Alu 3 310 -3 295 182 39 13 chr3 141803377 141803454 -85721124 - L1ME4a LINE L1 -82 6039 5961 573 187 96 48 chr3 141803779 141803945 -85720633 + MER5B DNA MER1_type 5 178 0 364 310 152 0 chr3 141804402 141804599 -85719979 - MIR SINE MIR -16 246 20 352 246 95 0 chr3 141805777 141805903 -85718675 + L1ME4a LINE L1 5969 6106 -15 735 192 128 17 chr3 141808034 141808206 -85716372 - AluJb SINE Alu -26 286 96 254 94 75 0 chr3 141808232 141808285 -85716293 - L1MB2 LINE L1 0 6171 6115 864 114 0 0 chr3 141808298 141808412 -85716166 - AluJ SINE Alu -194 118 5 1045 135 0 45 chr3 141808457 141808657 -85715921 - L1MB3 LINE L1 -56 6127 5937 1611 155 89 4 chr3 141808661 141808932 -85715646 - AluJb SINE Alu -17 295 2 267 127 36 0 chr3 141809511 141809566 -85715012 - L1MB2 LINE L1 0 6171 6115 736 124 0 18 chr3 141809573 141809686 -85714892 - FLAM_C SINE Alu -21 122 12 1848 141 9 31 chr3 141809692 141810011 -85714567 - AluJo SINE Alu 0 312 1 352 259 92 23 chr3 141810297 141810428 -85714150 - MIR3 SINE MIR -56 152 13 323 289 45 3 chr3 141810986 141811114 -85713464 + MIR SINE MIR 55 188 -63 1618 128 0 0 chr3 141813112 141813339 -85711239 - AluJo SINE Alu -1 311 85 723 281 52 39 chr3 141813992 141814433 -85710145 - L1M4 LINE L1 -3038 3108 2662 842 136 0 0 chr3 141815239 141815357 -85709221 - FLAM_C SINE Alu -25 118 1 1582 135 12 98 chr3 141815369 141815694 -85708884 - AluJo SINE Alu -5 307 11 373 282 18 9 chr3 141815716 141815842 -85708736 - MIR SINE MIR -66 142 16 2109 143 0 6 chr3 141816271 141816585 -85707993 - AluJb SINE Alu 0 312 1 564 277 59 115 chr3 141816942 141817011 -85707567 + HAL1 LINE L1 14 85 -2422 207 0 0 0 chr3 141817011 141817034 -85707544 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 564 277 59 115 chr3 141817034 141817339 -85707239 + HAL1 LINE L1 85 367 -2140 273 303 0 0 chr3 141817337 141817403 -85707175 - HAL1 LINE L1 -2441 66 1 * 530 66 0 13 chr3 141817534 141817610 -85706968 + (TTCC)n Simple_repeat Simple_repeat 4 78 0 1820 171 16 13 chr3 141817632 141817942 -85706636 - AluJo SINE Alu -1 311 1 1380 262 25 30 chr3 141817942 141818298 -85706280 + HAL1 LINE L1 443 798 -1709 2423 98 0 0 chr3 141818298 141818605 -85705973 - AluSx SINE Alu -5 307 1 1380 262 25 30 chr3 141818605 141818653 -85705925 + HAL1 LINE L1 798 845 -1662 238 286 0 0 chr3 141818661 141818738 -85705840 + L1MDa LINE L1 34 110 -6430 1997 120 55 14 chr3 141818792 141819083 -85705495 + AluJb SINE Alu 1 303 -9 617 37 0 12 chr3 141819130 141819211 -85705367 + (TTCC)n Simple_repeat Simple_repeat 1 80 0 2240 126 0 0 chr3 141820121 141820423 -85704155 - AluSq SINE Alu -11 302 1 224 291 13 101 chr3 141820508 141820666 -85703912 - MIR SINE MIR -114 148 5 510 135 0 0 chr3 141820791 141820895 -85703683 + (CA)n Simple_repeat Simple_repeat 2 105 0 185 250 0 0 chr3 141821902 141821950 -85702628 - L2 LINE L2 -5 3308 3261 2432 60 0 0 chr3 141822178 141822483 -85702095 + AluY SINE Alu 1 305 0 218 312 21 21 chr3 141823251 141823339 -85701239 + L2 LINE L2 3180 3267 -46 452 288 31 37 chr3 141823339 141823527 -85701051 + MIR SINE MIR 1 191 -66 2434 91 0 0 chr3 141824229 141824536 -85700042 - AluSq SINE Alu -6 307 1 696 261 95 0 chr3 141824623 141824834 -85699744 - MIR SINE MIR 0 262 32 1517 141 5 0 chr3 141825544 141825764 -85698814 + AluJb SINE Alu 1 221 -91 1476 256 58 48 chr3 141825875 141826497 -85698081 - HAL1 LINE L1 -1351 1156 529 826 125 0 114 chr3 141826707 141826922 -85697656 + AluYa5 SINE Alu 127 321 0 374 269 67 0 chr3 141827210 141827314 -85697264 - L2 LINE L2 -7 3306 3196 435 333 94 17 chr3 141827425 141827605 -85696973 - MIR3 SINE MIR -11 197 4 264 236 142 52 chr3 141828255 141828522 -85696056 - L1ME4a LINE L1 -82 6039 5749 1001 157 0 0 chr3 141828535 141828688 -85695890 - L1PA16 LINE L1 -9 6157 6005 2086 131 0 3 chr3 141829738 141830036 -85694542 - AluSx SINE Alu -15 297 1 789 196 43 16 chr3 141830053 141830237 -85694341 - MIR SINE MIR -11 251 63 1329 152 33 89 chr3 141832063 141832333 -85692245 + AluJb SINE Alu 27 281 -31 253 213 29 154 chr3 141832349 141832485 -85692093 + MER5A DNA MER1_type 71 189 0 274 234 106 0 chr3 141832488 141832582 -85691996 + MIR SINE MIR 104 207 -55 258 276 26 0 chr3 141832841 141832917 -85691661 + MER5A DNA MER1_type 111 188 -1 748 175 0 0 chr3 141833304 141833418 -85691160 - FLAM_C SINE Alu -28 115 2 2394 80 0 0 chr3 141833662 141833950 -85690628 - AluSc SINE Alu -21 288 1 232 197 0 70 chr3 141834350 141834421 -85690157 + T-rich Low_complexity Low_complexity 1 66 0 255 178 123 14 chr3 141834708 141834781 -85689797 - MER63 DNA MER1_type -3 1057 977 496 241 98 0 chr3 141834783 141834895 -85689683 - MER63 DNA MER1_type -86 750 2 397 262 71 0 chr3 141834951 141835077 -85689501 - L1ME4a LINE L1 -376 5745 5611 265 258 183 0 chr3 141835357 141835450 -85689128 + MIR SINE MIR 2 111 -151 282 195 52 0 chr3 141835497 141835574 -85689004 - Charlie5 DNA MER1_type -57 2555 2475 1959 132 59 0 chr3 141835624 141835911 -85688667 + AluSq SINE Alu 1 304 -9 547 140 97 0 chr3 141835916 141836030 -85688548 - Charlie5 DNA MER1_type -111 2501 2377 387 274 82 7 chr3 141836034 141836169 -85688409 + MIR SINE MIR 118 262 0 2128 135 3 3 chr3 141836188 141836491 -85688087 + AluSx SINE Alu 1 303 -9 689 162 268 6 chr3 141837036 141837215 -85687363 + MER33 DNA MER1_type 1 226 -98 285 159 48 0 chr3 141837221 141837284 -85687294 + MER33 DNA MER1_type 188 253 -71 1648 173 10 13 chr3 141838097 141838397 -85686181 - AluSx SINE Alu -13 299 1 198 273 55 36 chr3 141838992 141839102 -85685476 + L3 LINE CR1 1446 1557 -20 356 336 38 43 chr3 141840470 141840705 -85683873 + MIR SINE MIR 23 256 -6 1878 161 16 0 chr3 141841171 141841476 -85683102 + AluJb SINE Alu 1 310 -2 242 308 0 0 chr3 141842236 141842301 -85682277 - MIR SINE MIR -122 140 76 217 49 0 49 chr3 141842364 141842405 -85682173 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1152 21 7 21 chr3 141843570 141843714 -85680864 - L1PA3 LINE L1 0 6155 6014 21 0 0 0 chr3 141844094 141844115 -85680463 + AT_rich Low_complexity Low_complexity 1 21 0 1090 154 0 0 chr3 141844122 141844278 -85680300 - FRAM SINE Alu -25 151 1 1278 159 5 0 chr3 141844296 141844485 -85680093 + AluSx SINE Alu 1 190 -122 696 183 15 0 chr3 141844605 141844736 -85679842 - MLT1A1 LTR MaLR -232 133 1 523 221 24 8 chr3 141844968 141845095 -85679483 + L1MA10 LINE L1 6196 6324 -10 22 0 0 0 chr3 141845097 141845119 -85679459 + AT_rich Low_complexity Low_complexity 1 22 0 392 222 94 17 chr3 141845306 141845423 -85679155 - MER5B DNA MER1_type -14 164 39 221 0 0 33 chr3 141845432 141845462 -85679116 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 720 175 7 0 chr3 141845463 141845606 -85678972 - FRAM SINE Alu -32 144 1 234 146 0 0 chr3 141845609 141845650 -85678928 - MER5B DNA MER1_type -137 41 1 2220 116 3 0 chr3 141846007 141846308 -85678270 - AluSx SINE Alu -10 302 1 751 264 68 4 chr3 141847005 141847235 -85677343 - MIR SINE MIR 0 262 18 193 309 85 21 chr3 141847314 141847408 -85677170 - L2 LINE L2 -26 3246 3147 1920 161 6 3 chr3 141847534 141847845 -85676733 - AluJb SINE Alu 0 312 1 2363 109 3 0 chr3 141848313 141848624 -85675954 - AluSq SINE Alu -1 312 1 621 130 0 70 chr3 141848624 141848739 -85675839 - FLAM_C SINE Alu -5 138 32 2526 62 0 3 chr3 141848748 141849056 -85675522 - AluY SINE Alu -4 307 1 529 265 84 42 chr3 141849349 141849587 -85674991 - MLT1J1 LTR MaLR -190 256 9 325 232 14 0 chr3 141849655 141849724 -85674854 + L2 LINE L2 3244 3313 0 896 122 30 0 chr3 141849747 141849878 -85674700 - AluJo SINE Alu -177 135 1 519 189 0 128 chr3 141850010 141850174 -85674404 + FLAM_C SINE Alu 1 143 0 272 302 17 17 chr3 141850220 141850336 -85674242 - L2 LINE L2 -223 3049 2934 872 148 0 40 chr3 141850493 141850642 -85673936 - FLAM_C SINE Alu 0 143 1 1678 172 30 24 chr3 141850654 141850951 -85673627 - AluJo SINE Alu -13 299 1 199 268 204 13 chr3 141851090 141851247 -85673331 + L3b LINE CR1 1277 1463 -120 385 264 47 8 chr3 141851471 141851600 -85672978 - MIR SINE MIR -55 153 20 1752 143 11 11 chr3 141851897 141852183 -85672395 + AluJo SINE Alu 6 291 -21 1688 184 0 14 chr3 141852772 141853066 -85671512 + AluJb SINE Alu 1 290 -22 785 290 114 33 chr3 141853561 141854070 -85670508 - L2 LINE L2 -56 3257 2720 409 315 143 4 chr3 141854074 141854312 -85670266 + L2 LINE L2 3042 3312 -1 2365 77 3 22 chr3 141854518 141854829 -85669749 - AluY SINE Alu -6 305 1 2192 115 3 7 chr3 141854885 141855189 -85669389 - AluSx SINE Alu -3 309 7 1522 155 0 53 chr3 141855350 141855637 -85668941 + AluJb SINE Alu 36 308 0 589 120 213 0 chr3 141855708 141855816 -85668762 - FLAM_C SINE Alu -10 133 3 266 250 37 28 chr3 141855818 141855926 -85668652 + L1ME LINE L1 5653 5761 -360 1613 171 45 7 chr3 141856267 141856554 -85668024 - AluSx SINE Alu -14 298 1 563 132 19 9 chr3 141857114 141857220 -85667358 + MER5A DNA MER1_type 6 112 -77 225 0 0 0 chr3 141857220 141857245 -85667333 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 1363 100 0 0 chr3 141857247 141857417 -85667161 - AluSp SINE Alu -26 287 118 1314 202 52 95 chr3 141857445 141857803 -85666775 - MER113 DNA MER1_type? -27 494 122 1696 176 3 39 chr3 141857803 141858115 -85666463 - AluJo SINE Alu -6 306 6 1314 202 52 95 chr3 141858115 141858146 -85666432 - MER113 DNA MER1_type? -399 122 91 1933 143 3 31 chr3 141858146 141858467 -85666111 + AluJo SINE Alu 1 312 0 1314 202 52 95 chr3 141858467 141858592 -85665986 - MER113 DNA MER1_type? -430 91 1 856 257 51 41 chr3 141859085 141859326 -85665252 + L1ME4a LINE L1 5462 5699 -422 2399 64 4 0 chr3 141859326 141859642 -85664936 - AluSp SINE Alu 0 317 1 856 257 51 41 chr3 141859642 141859673 -85664905 + L1ME4a LINE L1 5699 5728 -393 946 132 0 0 chr3 141859673 141859802 -85664776 - FLAM_C SINE Alu -2 131 3 856 257 51 41 chr3 141859802 141859916 -85664662 + L1ME4a LINE L1 5728 5854 -267 316 174 12 81 chr3 141859945 141860031 -85664547 - L2 LINE L2 -1 3312 3233 189 225 0 0 chr3 141860177 141860217 -85664361 + L2 LINE L2 3270 3309 -4 871 122 0 0 chr3 141860700 141860815 -85663763 + AluSq/x SINE Alu 1 115 -198 735 79 48 0 chr3 141860817 141860943 -85663635 + GA-rich Low_complexity Low_complexity 2 133 0 1088 167 11 0 chr3 141860943 141861123 -85663455 + AluSg/x SINE Alu 129 310 -2 3541 171 29 22 chr3 141861334 141861690 -85662888 + L1MB7 LINE L1 5441 5793 -391 1606 165 162 3 chr3 141861690 141862005 -85662573 - MER47A DNA MER2_type 0 366 2 3541 171 29 22 chr3 141862005 141862309 -85662269 + L1MB7 LINE L1 5793 6109 -75 1960 149 34 0 chr3 141862309 141862605 -85661973 - AluSx SINE Alu -6 306 1 3541 171 29 22 chr3 141862605 141862673 -85661905 + L1MB7 LINE L1 6109 6175 -9 8194 200 18 65 chr3 141862824 141863137 -85661441 - Cheshire DNA MER1_type -545 1875 1549 1992 120 18 0 chr3 141863137 141863413 -85661165 + AluSx SINE Alu 4 284 -28 257 0 30 0 chr3 141863418 141863451 -85661127 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 8194 200 18 65 chr3 141863451 141863974 -85660604 - Cheshire DNA MER1_type -875 1545 999 355 133 0 0 chr3 141863974 141864034 -85660544 - L1MB7 LINE L1 -12 6172 6113 8194 200 18 65 chr3 141864034 141864777 -85659801 - Cheshire DNA MER1_type -1421 999 395 2077 135 3 0 chr3 141864777 141865243 -85659335 + AluSx SINE Alu 1 467 0 8194 200 18 65 chr3 141865243 141865621 -85658957 - Cheshire DNA MER1_type -2025 395 1 199 287 217 0 chr3 141865882 141865997 -85658581 - MIR SINE MIR -122 140 1 299 277 42 78 chr3 141866220 141866386 -85658192 + MIR3 SINE MIR 49 208 0 225 274 73 89 chr3 141866728 141866852 -85657726 - L2 LINE L2 -8 3264 3143 530 233 94 25 chr3 141867346 141867505 -85657073 - MIR SINE MIR -53 209 40 187 311 148 15 chr3 141867983 141868118 -85656460 + L3 LINE CR1 1424 1576 -1 5916 144 20 43 chr3 141868143 141868981 -85655597 - L1PB3 LINE L1 -1 6153 5297 2024 143 40 0 chr3 141868981 141869281 -85655297 - AluJb SINE Alu 0 312 1 5916 144 20 43 chr3 141869281 141870399 -85654179 - L1PB3 LINE L1 -857 5297 4227 2223 91 38 0 chr3 141870802 141871089 -85653489 + AluSg SINE Alu 1 298 -12 361 172 103 60 chr3 141871168 141871284 -85653294 - L1ME4a LINE L1 -40 6081 5961 455 302 22 0 chr3 141871349 141871528 -85653050 + MER5A DNA MER1_type 1 183 -6 373 198 170 0 chr3 141871542 141871648 -85652930 + MER5C DNA MER1_type 1 124 -200 25 31 0 0 chr3 141871736 141871768 -85652810 + AT_rich Low_complexity Low_complexity 1 32 0 1725 152 61 0 chr3 141871863 141872140 -85652438 + AluJo SINE Alu 1 294 -18 2108 118 10 10 chr3 141872183 141872489 -85652089 + AluSx SINE Alu 1 306 -6 274 29 0 0 chr3 141872489 141872524 -85652054 + MER5C DNA MER1_type 290 324 0 305 287 213 15 chr3 141872685 141872887 -85651691 - L2 LINE L2 -531 2783 2542 929 40 0 0 chr3 141873230 141873331 -85651247 - AluY SINE Alu -190 121 21 2259 110 3 7 chr3 141873751 141874061 -85650517 + AluSq SINE Alu 1 309 -4 525 139 0 0 chr3 141874150 141874279 -85650299 - AluSg/x SINE Alu 0 331 203 236 211 19 0 chr3 141874308 141874360 -85650218 - L1ME3 LINE L1 -4 6158 6106 2313 83 0 0 chr3 141874556 141874868 -85649710 + AluY SINE Alu 1 311 0 1221 155 58 54 chr3 141875372 141875649 -85648929 + L1MB8 LINE L1 5107 5384 -762 1595 140 163 63 chr3 141875649 141875696 -85648882 - MSTB1 LTR MaLR 0 432 391 2259 130 48 20 chr3 141875696 141876050 -85648528 - THE1B LTR MaLR 0 364 1 1595 140 163 63 chr3 141876050 141876398 -85648180 - MSTB1 LTR MaLR -41 391 1 3837 145 65 50 chr3 141876398 141876517 -85648061 + L1MB8 LINE L1 5380 5496 -682 2079 111 7 4 chr3 141876517 141876820 -85647758 + AluSx SINE Alu 2 305 0 3837 145 65 50 chr3 141876820 141877479 -85647099 + L1MB8 LINE L1 5496 6171 -7 237 328 25 25 chr3 141878497 141878616 -85645962 + MIR SINE MIR 16 134 -74 223 200 40 0 chr3 141878615 141878665 -85645913 - MER5A DNA MER1_type -69 120 69 * 228 200 18 18 chr3 141878705 141878760 -85645818 + MIR3 SINE MIR 151 205 -3 1807 161 0 41 chr3 141879667 141880014 -85644564 + AluJb SINE Alu 1 312 0 1704 149 29 62 chr3 141880903 141881212 -85643366 + AluJb SINE Alu 1 299 -13 2314 117 0 0 chr3 141881212 141881618 -85642960 + AluSc SINE Alu 1 406 0 229 298 83 0 chr3 141885227 141885311 -85639267 - MIR SINE MIR -79 183 93 587 283 30 17 chr3 141885746 141885983 -85638595 - MARNA DNA Mariner -122 464 225 1267 188 91 16 chr3 141888103 141888411 -85636167 - L1MA9 LINE L1 -36 6276 5946 302 348 52 9 chr3 141888530 141888645 -85635933 - L1MCa LINE L1 -4469 1957 1838 268 237 20 30 chr3 141888647 141888935 -85635643 + CT-rich Low_complexity Low_complexity 1 285 0 21 0 0 0 chr3 141889314 141889335 -85635243 + AT_rich Low_complexity Low_complexity 1 21 0 527 112 37 9 chr3 141889394 141889501 -85635077 + GA-rich Low_complexity Low_complexity 2 111 0 1874 94 4 8 chr3 141889521 141889777 -85634801 - AluY SINE Alu -2 309 55 752 165 98 0 chr3 141889777 141889910 -85634668 + L1MC1 LINE L1 6182 6327 -6 1709 164 3 3 chr3 141889919 141890206 -85634372 - AluJb SINE Alu -25 287 1 464 343 35 12 chr3 141890494 141890666 -85633912 - MIR3 SINE MIR 0 208 33 298 280 43 0 chr3 141890892 141890985 -85633593 + MIR3 SINE MIR 77 173 -35 230 308 0 0 chr3 141891009 141891061 -85633517 + MER58B DNA MER1_type 1 52 -289 341 236 0 28 chr3 141891066 141891138 -85633440 + MER58B DNA MER1_type 223 292 -49 729 226 0 0 chr3 141892371 141892504 -85632074 - FLAM_C SINE Alu 0 133 1 1552 181 0 10 chr3 141892668 141892960 -85631618 - AluJo SINE Alu -13 299 11 21 36 0 0 chr3 141893211 141893239 -85631339 + AT_rich Low_complexity Low_complexity 1 28 0 889 189 6 6 chr3 141893464 141893628 -85630950 - FRAM SINE Alu -2 164 1 235 258 67 11 chr3 141893995 141894084 -85630494 - MIR SINE MIR -92 170 77 2105 112 0 3 chr3 141895439 141895733 -85628845 + AluSc SINE Alu 1 293 -16 2156 101 0 0 chr3 141895754 141896042 -85628536 + AluSq SINE Alu 1 288 -25 2115 84 7 7 chr3 141896051 141896364 -85628214 + AluSq SINE Alu 1 313 0 2354 93 0 0 chr3 141896572 141896885 -85627693 + AluSq SINE Alu 1 313 0 181 111 83 28 chr3 141896917 141896953 -85627625 - L2 LINE L2 -15 3298 3261 * 334 279 177 13 chr3 141896921 141897079 -85627499 - MIR SINE MIR -12 250 67 467 274 55 27 chr3 141897799 141897945 -85626633 + MIR3 SINE MIR 19 168 -40 2105 107 0 0 chr3 141897971 141898262 -85626316 + AluSx SINE Alu 1 291 -21 980 272 133 29 chr3 141898411 141899034 -85625544 - L2 LINE L2 -4 3309 2640 201 74 0 0 chr3 141900497 141900524 -85624054 + (A)n Simple_repeat Simple_repeat 1 27 0 1965 120 38 0 chr3 141900704 141900995 -85623583 + AluSp SINE Alu 1 302 -11 1960 126 3 0 chr3 141901274 141901568 -85623010 + AluSq SINE Alu 1 295 -18 237 182 23 0 chr3 141901608 141901652 -85622926 - MIR3 SINE MIR -7 201 157 24 53 0 0 chr3 141903030 141903068 -85621510 + GC_rich Low_complexity Low_complexity 1 38 0 873 192 98 23 chr3 141903452 141903718 -85620860 + MER33 DNA MER1_type 39 324 0 404 260 0 40 chr3 141903780 141903880 -85620698 - MIR3 SINE MIR -3 205 110 21 57 0 0 chr3 141904013 141904048 -85620530 + AT_rich Low_complexity Low_complexity 1 35 0 227 281 0 0 chr3 141904678 141904735 -85619843 + CT-rich Low_complexity Low_complexity 2 58 0 356 245 116 58 chr3 141904879 141905112 -85619466 + MIR SINE MIR 3 257 0 2249 99 0 0 chr3 141905112 141905414 -85619164 + AluSg SINE Alu 2 303 -7 1572 164 57 17 chr3 141906250 141906549 -85618029 + AluJo SINE Alu 1 311 -1 2025 117 0 10 chr3 141906585 141906885 -85617693 + AluSg SINE Alu 1 297 -13 1968 126 10 0 chr3 141907102 141907403 -85617175 + AluSx SINE Alu 1 304 -8 200 245 120 71 chr3 141907415 141907599 -85616979 - L2 LINE L2 -1211 2103 1911 429 235 244 30 chr3 141907884 141908114 -85616464 + MLT1H LTR MaLR 271 549 0 1645 161 30 0 chr3 141908168 141908435 -85616143 - AluJb SINE Alu -37 275 1 923 161 6 0 chr3 141909813 141909974 -85614604 - AluJb SINE Alu -17 295 134 661 143 34 0 chr3 141910205 141910324 -85614254 + AluSg/x SINE Alu 188 310 -2 1271 154 29 5 chr3 141910324 141910532 -85614046 + MLT1A1 LTR MaLR 153 365 0 1702 159 14 0 chr3 141910641 141910954 -85613624 + AluJb SINE Alu 1 317 0 264 314 92 74 chr3 141910964 141911193 -85613385 - L2 LINE L2 -400 2914 2682 754 250 199 49 chr3 141911760 141912192 -85612386 - MLT1K LTR MaLR -1 587 91 1241 172 0 9 chr3 141912359 141912586 -85611992 + AluJo SINE Alu 86 310 -2 210 248 18 44 chr3 141914056 141914169 -85610409 + CT-rich Low_complexity Low_complexity 5 114 0 738 150 18 0 chr3 141914359 141914472 -85610106 - FLAM_C SINE Alu -16 127 13 1921 132 0 7 chr3 141914521 141914816 -85609762 + AluJb SINE Alu 10 302 -10 216 0 0 0 chr3 141914836 141914860 -85609718 + (GA)n Simple_repeat Simple_repeat 2 25 0 266 318 45 23 chr3 141915048 141915136 -85609442 - MIR3 SINE MIR -31 177 88 206 258 55 86 chr3 141915390 141915518 -85609060 - MIR3 SINE MIR -2 206 83 247 238 19 67 chr3 141915982 141916087 -85608491 - L1MC4 LINE L1 0 8042 7943 2133 128 0 0 chr3 141916425 141916737 -85607841 + AluSx SINE Alu 1 312 0 345 82 0 0 chr3 141917027 141917076 -85607502 + (TG)n Simple_repeat Simple_repeat 1 49 0 1495 200 4 0 chr3 141917076 141917356 -85607222 - AluJb SINE Alu -31 281 1 1676 184 3 3 chr3 141917370 141917664 -85606914 - AluJo SINE Alu -17 295 2 707 319 172 24 chr3 141917682 141918136 -85606442 - L3 LINE CR1 -625 952 432 2378 64 0 16 chr3 141918338 141918652 -85605926 - AluY SINE Alu -2 309 1 1683 186 129 30 chr3 141918688 141919049 -85605529 - Charlie2 DNA MER1_type -456 2406 1978 1822 149 0 0 chr3 141919049 141919356 -85605222 + AluSx SINE Alu 1 307 0 1683 186 129 30 chr3 141919356 141919497 -85605081 - Charlie2 DNA MER1_type -884 1978 1852 253 190 155 120 chr3 141919503 141919579 -85604999 - Charlie2 DNA MER1_type -2546 316 244 2450 52 13 3 chr3 141919579 141919887 -85604691 + AluY SINE Alu 1 311 0 253 190 155 120 chr3 141919887 141919952 -85604626 - Charlie2 DNA MER1_type -2618 244 170 267 321 153 52 chr3 141920163 141920412 -85604166 - L2 LINE L2 -4 3268 2995 1778 166 0 7 chr3 141920433 141920741 -85603837 + AluJo SINE Alu 5 310 -2 22 0 0 0 chr3 141920742 141920764 -85603814 + AT_rich Low_complexity Low_complexity 1 22 0 409 230 89 7 chr3 141920936 141921084 -85603494 + L1ME3A LINE L1 5943 6098 -64 24 32 0 0 chr3 141921084 141921115 -85603463 + AT_rich Low_complexity Low_complexity 1 31 0 3388 201 79 30 chr3 141921388 141922368 -85602210 + L1ME1 LINE L1 4488 5581 -585 2421 63 3 0 chr3 141922368 141922667 -85601911 + AluY SINE Alu 1 300 -11 3388 201 79 30 chr3 141922667 141923271 -85601307 + L1ME1 LINE L1 5581 6154 -12 413 329 202 8 chr3 141923271 141923523 -85601055 + L1ME4a LINE L1 5620 5920 -201 190 365 35 0 chr3 141923835 141923920 -85600658 + MIR SINE MIR 67 154 -108 399 268 89 8 chr3 141923943 141924066 -85600512 - MIR SINE MIR -65 197 65 200 31 62 0 chr3 141924552 141924584 -85599994 + A-rich Low_complexity Low_complexity 5 38 0 516 289 121 34 chr3 141924598 141924837 -85599741 + MIR SINE MIR 3 262 0 2443 234 58 39 chr3 141924960 141925105 -85599473 + L1ME1 LINE L1 5421 5562 -604 3041 87 11 37 chr3 141925105 141925565 -85599013 + LTR7 LTR ERV1 1 448 -2 2443 234 58 39 chr3 141925565 141926142 -85598436 + L1ME1 LINE L1 5562 6157 -9 525 172 21 0 chr3 141926142 141926235 -85598343 - AluJ/FLAM SINE Alu -216 96 2 627 342 27 16 chr3 141926258 141926515 -85598063 + MIR SINE MIR 2 261 -1 360 277 69 10 chr3 141926577 141926678 -85597900 + L1ME4a LINE L1 6007 6113 -8 584 304 230 18 chr3 141928011 141928155 -85596423 - L3 LINE CR1 -24 1553 1441 2091 120 0 10 chr3 141928155 141928475 -85596103 + AluSx SINE Alu 1 312 0 584 304 230 18 chr3 141928475 141928877 -85595701 - L3 LINE CR1 -136 1441 891 456 286 97 5 chr3 141929767 141929962 -85594616 + MIR SINE MIR 41 257 -5 238 306 73 40 chr3 141930118 141930242 -85594336 + L2 LINE L2 3184 3311 -2 246 108 0 235 chr3 141930749 141930851 -85593727 - MER116 DNA Mariner -2 78 1 283 334 47 65 chr3 141931202 141931518 -85593060 - L2 LINE L2 -14 3258 2951 1716 167 23 26 chr3 141931518 141931866 -85592712 + L1MC1 LINE L1 5987 6333 0 283 334 47 65 chr3 141931866 141931998 -85592580 - L2 LINE L2 -321 2951 2818 549 179 35 0 chr3 141932013 141932158 -85592420 + GA-rich Low_complexity Low_complexity 4 153 0 206 252 168 19 chr3 141932205 141932312 -85592266 - L2 LINE L2 -340 2973 2851 22 0 0 0 chr3 141933660 141933682 -85590896 + AT_rich Low_complexity Low_complexity 1 22 0 912 161 0 13 chr3 141933687 141933842 -85590736 + AluSq SINE Alu 1 153 -160 462 169 0 0 chr3 141933842 141933925 -85590653 + AluJ/FRAM SINE Alu 226 308 -4 285 280 123 71 chr3 141933990 141934168 -85590410 + MIR SINE MIR 5 184 -63 326 320 104 8 chr3 141935512 141935637 -85588941 + L1MC5 LINE L1 7751 7887 -74 328 225 127 80 chr3 141935672 141935885 -85588693 - L1ME4a LINE L1 -16 6105 5883 2150 83 24 14 chr3 141936060 141936349 -85588229 - AluSc SINE Alu -17 292 1 1373 146 13 4 chr3 141937016 141937249 -85587329 + L1MB4 LINE L1 5591 5825 -355 569 190 0 0 chr3 141937256 141937356 -85587222 + FLAM_C SINE Alu 9 108 -35 891 88 0 40 chr3 141937502 141937627 -85586951 + FLAM_C SINE Alu 12 131 -12 210 91 0 0 chr3 141938225 141938258 -85586320 + (CGGGGG)n Simple_repeat Simple_repeat 3 35 0 289 315 37 9 chr3 141938536 141938644 -85585934 + MIR3 SINE MIR 85 195 -13 402 286 40 30 chr3 141938999 141939198 -85585380 - MIR SINE MIR -28 234 34 2348 87 0 7 chr3 141939537 141939835 -85584743 + AluSg SINE Alu 1 296 -14 861 173 0 0 chr3 141939838 141939971 -85584607 - AluJo/FLAM SINE Alu -169 133 1 2203 118 0 3 chr3 141941636 141941932 -85582646 - AluSx SINE Alu -17 295 1 2271 94 7 7 chr3 141942536 141942833 -85581745 - AluSq SINE Alu -16 297 1 250 267 67 75 chr3 141943060 141943180 -85581398 + MIR3 SINE MIR 88 160 -48 1932 156 7 3 chr3 141943769 141944070 -85580508 - AluJb SINE Alu -10 302 1 219 355 74 8 chr3 141944335 141944456 -85580122 - MIR3 SINE MIR -43 165 37 1631 185 12 52 chr3 141944593 141944918 -85579660 + AluJo SINE Alu 1 312 0 942 227 87 68 chr3 141945026 141945249 -85579329 - MLT1I LTR MaLR -17 392 158 2213 114 0 13 chr3 141945249 141945547 -85579031 + AluSg SINE Alu 1 294 -16 942 227 87 68 chr3 141945547 141945693 -85578885 - MLT1I LTR MaLR -251 158 16 598 186 29 21 chr3 141945696 141945857 -85578721 - L1ME1 LINE L1 -178 5988 5838 267 191 0 0 chr3 141945829 141945876 -85578702 - L1MB5 LINE L1 -270 5904 5858 * 2211 108 0 3 chr3 141946056 141946352 -85578226 - AluSg SINE Alu -15 295 1 1081 145 0 6 chr3 141946352 141946531 -85578047 - L1 LINE L1 -2019 4127 3950 487 192 74 89 chr3 141946736 141946939 -85577639 - Tigger7 DNA MER2_type 0 2491 2292 247 143 18 18 chr3 141946956 141947006 -85577572 + (TA)n Simple_repeat Simple_repeat 2 52 0 2425 88 0 3 chr3 141947006 141947312 -85577266 - AluSx SINE Alu -7 305 1 419 353 10 15 chr3 141947560 141947761 -85576817 + LTR67 LTR ERVL 2 201 -356 2267 118 3 0 chr3 141947770 141948074 -85576504 + AluSx SINE Alu 1 305 -7 354 197 40 0 chr3 141948330 141948406 -85576172 - MIR SINE MIR -74 188 110 2631 171 49 24 chr3 141948889 141949454 -85575124 + L1MA9 LINE L1 5682 6257 -55 1560 96 0 5 chr3 141949454 141949651 -85574927 - AluSx SINE Alu -114 198 3 710 238 6 30 chr3 141949662 141949830 -85574748 - FRAM SINE Alu -2 164 1 2637 115 28 7 chr3 141949852 141950279 -85574299 - L1MC3 LINE L1 -22 7763 7328 2038 152 3 3 chr3 141951434 141951743 -85572835 - AluSx SINE Alu -3 309 1 3482 219 27 45 chr3 141952011 141952498 -85572080 - L1ME1 LINE L1 -5 6161 5695 1988 165 0 0 chr3 141952498 141952795 -85571783 + AluSx SINE Alu 1 297 -15 3482 219 27 45 chr3 141952795 141953239 -85571339 - L1ME1 LINE L1 -471 5695 5245 916 153 11 68 chr3 141954338 141954514 -85570064 - FRAM SINE Alu -9 167 2 445 336 25 17 chr3 141954520 141954761 -85569817 - L1ME4a LINE L1 -294 5827 5585 29 0 0 0 chr3 141955742 141955771 -85568807 + AT_rich Low_complexity Low_complexity 1 29 0 281 244 12 24 chr3 141956245 141956327 -85568251 + C-rich Low_complexity Low_complexity 2 82 0 1942 145 10 3 chr3 141956778 141957088 -85567490 - AluJo SINE Alu 0 312 1 398 131 253 0 chr3 141957437 141957536 -85567042 - MIR SINE MIR -35 227 104 4363 84 31 2 chr3 141957859 141958442 -85566136 + MER4A LTR ERV1 1 600 0 1767 131 14 21 chr3 141958602 141958884 -85565694 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr3 141958884 141958905 -85565673 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 328 257 41 20 chr3 141959070 141959244 -85565334 - AluSp/q SINE Alu 0 303 201 653 121 0 0 chr3 141959639 141959730 -85564848 - AluS SINE Alu -221 92 2 743 122 0 68 chr3 141959731 141959840 -85564738 + L1MB4 LINE L1 6033 6131 -49 1823 122 32 55 chr3 141959840 141960151 -85564427 + AluJb SINE Alu 1 304 -8 743 122 0 68 chr3 141960151 141960188 -85564390 + L1MB4 LINE L1 6131 6169 -11 2075 137 0 10 chr3 141960560 141960859 -85563719 + AluSx SINE Alu 1 296 -16 227 196 109 0 chr3 141961338 141961384 -85563194 + LTR29 LTR ERV1 572 622 0 1758 118 56 15 chr3 141961726 141961996 -85562582 - AluSx SINE Alu -31 281 1 1127 159 16 6 chr3 141963729 141963931 -85560647 + L1MC/D LINE L1 5477 5679 -516 23 0 0 0 chr3 141964118 141964141 -85560437 + AT_rich Low_complexity Low_complexity 1 23 0 1493 173 54 22 chr3 141964144 141964422 -85560156 - AluJb SINE Alu -25 287 1 925 189 0 12 chr3 141964433 141964597 -85559981 - AluJo/FRAM SINE Alu -17 295 134 1606 37 5 0 chr3 141964597 141964784 -85559794 - AluY SINE Alu -4 307 120 2416 93 0 7 chr3 141964794 141965104 -85559474 - AluSx SINE Alu -4 308 1 514 260 189 47 chr3 141965562 141965900 -85558678 - L2 LINE L2 -1 3312 2927 376 254 82 34 chr3 141966917 141967075 -85557503 + MIR SINE MIR 4 167 -67 23 33 0 0 chr3 141967828 141967858 -85556720 + GC_rich Low_complexity Low_complexity 1 30 0 791 285 77 4 chr3 141968254 141968489 -85556089 - MIR SINE MIR -2 260 9 734 245 83 0 chr3 141970055 141970247 -85554331 + MIR SINE MIR 40 247 -15 334 217 109 0 chr3 141971153 141971245 -85553333 + Charlie7 DNA MER1_type 1 102 -2510 * 492 203 92 18 chr3 141971229 141971392 -85553186 + Charlie7 DNA MER1_type 2438 2612 0 297 354 35 25 chr3 141971491 141971689 -85552889 + L2 LINE L2 2865 3064 -208 209 94 0 0 chr3 141972112 141972144 -85552434 + L2 LINE L2 3279 3310 -3 262 297 119 0 chr3 141972515 141972633 -85551945 + L3 LINE CR1 902 1033 -544 1547 179 20 34 chr3 141972689 141972985 -85551593 - AluJb SINE Alu -1 311 20 267 127 36 0 chr3 141974430 141974485 -85550093 - L1MB2 LINE L1 0 6171 6115 664 146 0 18 chr3 141974492 141974602 -85549976 - FLAM_C SINE Alu -21 122 15 2021 137 0 7 chr3 141974631 141974923 -85549655 - AluSx SINE Alu -22 290 1 1795 151 14 0 chr3 141975532 141975811 -85548767 + AluJo SINE Alu 23 305 -7 836 256 0 6 chr3 141975924 141976100 -85548478 + MER8 DNA MER2_type 1 175 -64 234 277 15 0 chr3 141976077 141976142 -85548436 + MER2 DNA MER2_type 280 345 0 * 191 88 29 0 chr3 141976196 141976230 -85548348 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 22 35 0 0 chr3 141976642 141976671 -85547907 + AT_rich Low_complexity Low_complexity 1 29 0 254 307 72 28 chr3 141977118 141977285 -85547293 + L1ME LINE L1 321 495 -5575 2015 264 67 38 chr3 141977328 141978397 -85546181 + L1ME LINE L1 431 1494 -4586 1936 237 72 41 chr3 141978407 141978584 -85545994 + HAL1 LINE L1 899 1069 -1438 180 0 0 0 chr3 141978584 141978604 -85545974 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 2030 143 0 0 chr3 141978604 141978884 -85545694 - AluSx SINE Alu -32 280 1 1936 237 72 41 chr3 141978884 141979508 -85545070 + HAL1 LINE L1 1068 1726 -781 1050 211 106 54 chr3 141979497 141979810 -85544768 + HAL1 LINE L1 2072 2412 -95 * 1685 176 0 11 chr3 141979810 141980089 -85544489 + AluJb SINE Alu 1 276 -36 1050 211 106 54 chr3 141980089 141980182 -85544396 + HAL1 LINE L1 2412 2499 -8 757 203 0 0 chr3 141980504 141980627 -85543951 - FLAM_C SINE Alu -19 124 2 554 230 50 61 chr3 141980973 141981234 -85543344 + L1MC5 LINE L1 7660 7917 -44 1770 66 0 4 chr3 141981289 141981516 -85543062 + L1PB1 LINE L1 5926 6151 0 24 32 0 0 chr3 141981635 141981666 -85542912 + AT_rich Low_complexity Low_complexity 1 31 0 940 196 22 6 chr3 141981801 141981980 -85542598 + AluJb SINE Alu 120 301 -11 38 51 0 0 chr3 141981982 141982041 -85542537 + AT_rich Low_complexity Low_complexity 1 59 0 189 290 0 32 chr3 141982674 141982736 -85541842 - MIR SINE MIR -133 75 16 212 331 87 8 chr3 141983761 141983888 -85540690 + MIR SINE MIR 56 192 -70 187 222 0 0 chr3 141983909 141983945 -85540633 - L2 LINE L2 -9 3263 3228 2408 100 0 0 chr3 141984040 141984340 -85540238 + AluSx SINE Alu 1 300 -12 207 234 21 21 chr3 141984350 141984397 -85540181 - L2 LINE L2 -86 3186 3140 184 299 15 15 chr3 141984675 141984742 -85539836 - MER5B DNA MER1_type -79 99 33 35 54 0 0 chr3 141985282 141985338 -85539240 + AT_rich Low_complexity Low_complexity 1 56 0 * 405 297 26 67 chr3 141985297 141985492 -85539086 - MIR SINE MIR -62 200 14 2055 143 6 13 chr3 141985548 141985862 -85538716 + AluSx SINE Alu 1 312 0 857 212 0 0 chr3 141985966 141986117 -85538461 + FRAM SINE Alu 1 151 -15 2158 67 3 33 chr3 141986712 141987012 -85537566 + AluY SINE Alu 2 292 -19 2181 97 0 0 chr3 141987124 141987414 -85537164 - AluSx SINE Alu -18 294 5 2196 97 0 7 chr3 141987429 141987727 -85536851 - AluSg1 SINE Alu -13 296 1 2064 104 7 7 chr3 141990982 141991279 -85533299 + AluSq SINE Alu 1 297 -16 189 0 0 0 chr3 141992180 141992201 -85532377 + (TTTTG)n Simple_repeat Simple_repeat 5 25 0 215 214 18 18 chr3 141994763 141994819 -85529759 + (TA)n Simple_repeat Simple_repeat 2 57 0 24 0 0 0 chr3 141995391 141995415 -85529163 + AT_rich Low_complexity Low_complexity 1 24 0 1379 179 0 85 chr3 141995840 141996181 -85528397 + AluJb SINE Alu 1 312 0 270 254 119 22 chr3 141996696 141996830 -85527748 - MIR SINE MIR -50 212 66 1702 153 38 3 chr3 141996834 141997121 -85527457 - AluJb SINE Alu -15 297 1 1909 133 13 19 chr3 141997565 141997893 -85526685 - AluSx SINE Alu 0 312 1 383 333 20 45 chr3 141997909 141997982 -85526596 - MIR SINE MIR -50 212 139 2333 60 3 3 chr3 141997982 141998281 -85526297 - AluY SINE Alu -12 299 1 383 333 20 45 chr3 141998281 141998405 -85526173 - MIR SINE MIR -123 139 20 2691 134 60 0 chr3 141998464 141998912 -85525666 - L1MA5 LINE L1 -9 6291 5817 1500 128 92 7 chr3 142000253 142000526 -85524052 + AluJb SINE Alu 1 296 -16 1448 132 94 55 chr3 142000579 142000791 -85523787 + LTR23 LTR ERV1 1 203 -234 1296 168 9 98 chr3 142000791 142000913 -85523665 - AluJo SINE Alu -2 300 169 1755 103 62 41 chr3 142000913 142001203 -85523375 + AluSx SINE Alu 5 300 -12 1296 168 9 98 chr3 142001203 142001407 -85523171 - AluJo SINE Alu -133 169 3 1448 132 94 55 chr3 142001407 142001563 -85523015 + LTR23 LTR ERV1 203 437 0 348 289 42 21 chr3 142001564 142001706 -85522872 + L3 LINE CR1 1259 1403 -174 388 278 198 0 chr3 142001708 142001834 -85522744 - MER5A DNA MER1_type 0 189 39 259 182 0 36 chr3 142001862 142001917 -85522661 + Charlie5 DNA MER1_type 2 54 -2558 543 157 11 0 chr3 142001918 142002007 -85522571 - MER3 DNA MER1_type -107 102 13 587 233 135 70 chr3 142002228 142002274 -85522304 + Charlie2 DNA MER1_type 1962 2004 -858 270 0 0 0 chr3 142002274 142002304 -85522274 + (TG)n Simple_repeat Simple_repeat 2 31 0 587 233 135 70 chr3 142002304 142002643 -85521935 + Charlie2 DNA MER1_type 2004 2372 -490 1141 181 77 53 chr3 142003088 142003463 -85521115 + Charlie2 DNA MER1_type 2365 2748 -114 2112 99 0 7 chr3 142004045 142004359 -85520219 + AluSg SINE Alu 1 312 0 2093 120 0 0 chr3 142005003 142005295 -85519283 + AluSx SINE Alu 3 294 -18 1329 140 119 36 chr3 142005306 142005584 -85518994 + AluJo SINE Alu 1 301 -11 312 175 33 92 chr3 142005598 142005718 -85518860 + L1MC5 LINE L1 7634 7746 -215 898 129 0 0 chr3 142005776 142005908 -85518670 - FLAM_C SINE Alu 0 133 2 890 151 0 0 chr3 142006428 142006554 -85518024 + FLAM_C SINE Alu 1 126 -7 852 217 78 14 chr3 142007551 142007768 -85516810 - MLT1K LTR MaLR 0 588 358 394 367 52 5 chr3 142007764 142007974 -85516604 - MLT1K LTR MaLR -365 223 4 * 1992 146 0 7 chr3 142008631 142008940 -85515638 - AluJb SINE Alu -5 307 1 1478 166 59 14 chr3 142009982 142010272 -85514306 + AluJo SINE Alu 1 303 -9 703 165 9 0 chr3 142011241 142011356 -85513222 + FLAM_C SINE Alu 2 117 -16 606 287 48 6 chr3 142011702 142011869 -85512709 + MIR SINE MIR 69 242 -20 262 128 0 0 chr3 142012281 142012320 -85512258 + LTR56 LTR ERV1 349 387 -58 2236 100 0 0 chr3 142012358 142012659 -85511919 + AluSx SINE Alu 1 301 -11 2283 57 0 3 chr3 142012662 142012989 -85511589 + AluY SINE Alu 1 326 0 1750 153 23 10 chr3 142013707 142014015 -85510563 - AluJb SINE Alu 0 312 1 1018 93 14 0 chr3 142014675 142014815 -85509763 - AluSg/x SINE Alu -15 295 154 844 200 27 11 chr3 142015172 142015357 -85509221 - MER5A DNA MER1_type 0 189 2 268 268 8 89 chr3 142015573 142015696 -85508882 - MER5A DNA MER1_type -44 145 33 378 0 0 0 chr3 142016062 142016104 -85508474 + (TG)n Simple_repeat Simple_repeat 1 42 0 258 339 28 9 chr3 142016122 142016231 -85508347 - MIR3 SINE MIR -27 181 71 837 116 56 143 chr3 142016307 142016523 -85508055 - AluJb SINE Alu -6 306 110 311 235 61 76 chr3 142016736 142016868 -85507710 + MLT1H LTR MaLR 178 307 -242 253 289 2 12 chr3 142016919 142017001 -85507577 + MLT1H LTR MaLR 480 549 0 44 56 0 0 chr3 142017361 142017433 -85507145 + AT_rich Low_complexity Low_complexity 1 72 0 772 108 0 0 chr3 142017433 142017535 -85507043 - AluJb SINE Alu -209 103 2 387 0 0 0 chr3 142018679 142018722 -85505856 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 6540 67 15 35 chr3 142018722 142020651 -85503927 - SVA Other Other -518 1363 50 213 39 0 0 chr3 142020651 142020677 -85503901 + (GGGAGA)n Simple_repeat Simple_repeat 1 26 0 4238 114 60 80 chr3 142020681 142021458 -85503120 + MER4E LTR ERV1 18 779 0 2638 92 66 28 chr3 142021884 142022308 -85502270 - LTR7 LTR ERV1 -10 440 1 2619 80 51 0 chr3 142022308 142022681 -85501897 - HERVH LTR ERV1 0 7713 7322 1496 106 18 9 chr3 142022679 142022897 -85501681 - HERVH LTR ERV1 -1894 5819 5600 * 4298 149 6 1 chr3 142022898 142023557 -85501021 - HERVH LTR ERV1 -2564 5149 4488 3468 101 6 4 chr3 142023559 142024052 -85500526 - HERVH LTR ERV1 -3720 3993 3500 911 135 20 0 chr3 142024051 142024199 -85500379 - HERVH LTR ERV1 -4423 3290 3140 * 19938 96 47 5 chr3 142024193 142027061 -85497517 - HERVH LTR ERV1 -4726 2987 1 2483 105 66 16 chr3 142027063 142027490 -85497088 - LTR7 LTR ERV1 -2 448 1 2432 168 56 2 chr3 142027607 142028036 -85496542 - LTR47A LTR ERVL 0 452 1 253 156 66 189 chr3 142028278 142028400 -85496178 + MIR SINE MIR 86 192 -70 397 237 11 11 chr3 142028550 142028643 -85495935 + Charlie4 DNA MER1_type 1868 1960 -1 1472 207 61 24 chr3 142029725 142030101 -85494477 - MLT1B LTR MaLR 0 390 1 887 145 0 0 chr3 142030398 142030536 -85494042 - FLAM_C SINE Alu -5 138 1 228 220 0 0 chr3 142030595 142030645 -85493933 + MIR3 SINE MIR 135 184 -24 1636 175 3 13 chr3 142030863 142031166 -85493412 + AluJo SINE Alu 1 300 -12 310 158 18 0 chr3 142031703 142031760 -85492818 + MIR SINE MIR 91 148 -60 327 263 164 20 chr3 142033132 142033284 -85491294 + MIR3 SINE MIR 16 189 -19 227 326 76 0 chr3 142034006 142034098 -85490480 - MIR SINE MIR -62 146 48 1924 139 0 10 chr3 142035086 142035396 -85489182 + AluJb SINE Alu 6 312 0 294 208 0 0 chr3 142037024 142037077 -85487501 + L2 LINE L2 3261 3313 0 1903 139 24 3 chr3 142037096 142037383 -85487195 + AluJb SINE Alu 1 293 -19 2359 232 49 7 chr3 142037594 142038184 -85486394 - L1MB7 LINE L1 -50 6134 5520 180 250 26 53 chr3 142038867 142038943 -85485635 + MER5B DNA MER1_type 5 78 -100 2165 136 3 3 chr3 142040773 142041074 -85483504 + AluJo SINE Alu 1 301 -11 2346 87 27 3 chr3 142042213 142042513 -85482065 - AluSx SINE Alu -5 307 1 1972 221 33 19 chr3 142043519 142043999 -85480579 + MLT1D LTR MaLR 12 498 -7 198 0 0 0 chr3 142044092 142044114 -85480464 + (CAG)n Simple_repeat Simple_repeat 1 22 0 674 286 32 0 chr3 142044138 142044327 -85480251 - MIR SINE MIR -49 213 19 191 271 0 11 chr3 142044524 142044705 -85479873 + (TG)n Simple_repeat Simple_repeat 1 179 0 258 278 31 73 chr3 142045742 142045933 -85478645 - L1MC4 LINE L1 -1 8041 7859 307 354 28 7 chr3 142046879 142047023 -85477555 - MER117 DNA MER1_type -27 170 24 264 250 83 10 chr3 142048265 142048361 -85476217 + MIR SINE MIR 81 183 -79 469 313 139 0 chr3 142048889 142049097 -85475481 + MIR SINE MIR 2 238 -24 924 230 19 35 chr3 142051391 142051648 -85472930 - MIR SINE MIR 0 262 10 574 303 39 23 chr3 142051649 142051882 -85472696 - L2 LINE L2 -1303 2011 1770 2370 105 0 10 chr3 142051882 142052187 -85472391 + AluSq SINE Alu 1 302 -11 574 303 39 23 chr3 142052187 142052263 -85472315 - L2 LINE L2 -1544 1770 1697 2366 105 0 0 chr3 142052315 142052620 -85471958 + AluSx SINE Alu 1 305 -7 277 341 62 16 chr3 142052720 142052849 -85471729 + L2 LINE L2 3122 3256 -16 1705 165 52 0 chr3 142053537 142053828 -85470750 + AluJo SINE Alu 1 306 -6 2416 80 0 22 chr3 142054610 142054922 -85469656 + AluSg SINE Alu 3 307 -3 902 200 0 6 chr3 142055562 142055727 -85468851 + FRAM SINE Alu 1 164 -2 277 301 0 14 chr3 142056855 142056928 -85467650 + L2 LINE L2 3242 3313 0 2013 133 27 10 chr3 142057216 142057509 -85467069 - AluJo SINE Alu -14 298 1 819 114 0 32 chr3 142058230 142058353 -85466225 + FLAM_C SINE Alu 13 131 -12 338 297 76 42 chr3 142061564 142061682 -85462896 + L1ME4a LINE L1 5927 6048 -73 245 310 58 0 chr3 142062862 142062949 -85461629 - MIR SINE MIR -6 256 165 195 247 71 24 chr3 142062947 142063032 -85461546 - MIR3 SINE MIR -110 98 10 * 272 304 0 0 chr3 142063590 142063669 -85460909 + L3 LINE CR1 786 864 -713 22 0 0 0 chr3 142063708 142063730 -85460848 + AT_rich Low_complexity Low_complexity 1 22 0 2210 126 0 3 chr3 142063805 142064114 -85460464 + AluSx SINE Alu 1 308 -4 281 175 32 0 chr3 142064114 142064177 -85460401 + GA-rich Low_complexity Low_complexity 2 66 0 201 354 12 12 chr3 142064182 142064264 -85460314 + L3 LINE CR1 966 1047 -530 417 259 181 18 chr3 142064349 142064515 -85460063 + L3 LINE CR1 1190 1382 -195 2343 99 10 0 chr3 142064516 142064809 -85459769 + AluSx SINE Alu 1 296 -16 2207 190 56 37 chr3 142064818 142065302 -85459276 + MLT1D LTR MaLR 3 495 -10 433 313 7 14 chr3 142065345 142065489 -85459089 + L3 LINE CR1 1430 1572 -5 202 269 0 0 chr3 142066524 142066576 -85458002 - L2 LINE L2 -2 3270 3219 249 264 100 18 chr3 142067205 142067315 -85457263 + MER5B DNA MER1_type 59 177 -1 2346 98 0 0 chr3 142067362 142067657 -85456921 - AluSc SINE Alu -14 295 1 2025 122 7 21 chr3 142067720 142068032 -85456546 - AluSx SINE Alu 0 308 1 2069 131 0 32 chr3 142068578 142068892 -85455686 + AluJb SINE Alu 5 308 -4 351 298 142 12 chr3 142068895 142069078 -85455500 - MIR SINE MIR -2 260 53 189 282 45 55 chr3 142070877 142070987 -85453591 - L3 LINE CR1 -293 1284 1176 879 169 35 0 chr3 142071839 142072011 -85452567 + MER45A DNA AcHobo 1 178 0 222 302 52 31 chr3 142072640 142072736 -85451842 + MIR SINE MIR 84 181 -81 196 193 88 35 chr3 142073215 142073272 -85451306 + MIR SINE MIR 111 170 -92 1636 164 29 25 chr3 142073548 142073668 -85450910 + AluJo SINE Alu 1 119 -193 194 0 39 0 chr3 142073668 142073694 -85450884 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1636 164 29 25 chr3 142073694 142073884 -85450694 + AluJo SINE Alu 119 312 0 2400 105 0 0 chr3 142073966 142074270 -85450308 - AluSx SINE Alu -5 307 4 438 107 33 58 chr3 142074271 142074336 -85450242 + CT-rich Low_complexity Low_complexity 4 66 -55 316 0 45 0 chr3 142074336 142074380 -85450198 + (CCCTG)n Simple_repeat Simple_repeat 2 47 0 438 107 33 58 chr3 142074380 142074435 -85450143 + CT-rich Low_complexity Low_complexity 66 121 0 1717 212 0 0 chr3 142074438 142074749 -85449829 - AluJb SINE Alu -1 311 1 1829 184 3 3 chr3 142074763 142075057 -85449521 - AluJo SINE Alu -17 295 2 625 324 172 24 chr3 142075075 142075529 -85449049 - L3 LINE CR1 -625 952 432 2597 58 0 13 chr3 142075731 142076043 -85448535 - AluY SINE Alu -3 308 1 1611 192 127 28 chr3 142076079 142076440 -85448138 - Charlie2 DNA MER1_type -456 2406 1978 1976 149 0 0 chr3 142076440 142076747 -85447831 + AluSx SINE Alu 1 307 0 1611 192 127 28 chr3 142076747 142076888 -85447690 - Charlie2 DNA MER1_type -884 1978 1852 2676 42 13 3 chr3 142076970 142077278 -85447300 + AluY SINE Alu 1 311 0 267 297 125 16 chr3 142077914 142078042 -85446536 - MIR3 SINE MIR -65 143 2 212 313 33 65 chr3 142078746 142078960 -85445618 + L2 LINE L2 2836 3042 -230 1969 241 83 10 chr3 142079150 142079728 -85444850 + L1ME3A LINE L1 5479 6098 -72 956 131 44 0 chr3 142079774 142079940 -85444638 + FRAM SINE Alu 11 182 0 273 57 0 0 chr3 142080215 142080250 -85444328 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 183 345 36 0 chr3 142080491 142080546 -85444032 + L2 LINE L2 3117 3173 -99 24 0 0 0 chr3 142080679 142080703 -85443875 + AT_rich Low_complexity Low_complexity 1 24 0 184 324 65 28 chr3 142081047 142081155 -85443423 - MIR3 SINE MIR 0 208 97 398 297 47 8 chr3 142081361 142081489 -85443089 + L2 LINE L2 3140 3272 0 3737 208 49 14 chr3 142082548 142083364 -85441214 - MER21B LTR ERV1 -1 862 18 266 294 0 15 chr3 142083397 142083465 -85441113 - MER21B LTR ERV1 -796 67 1 27 0 0 0 chr3 142083561 142083588 -85440990 + AT_rich Low_complexity Low_complexity 1 27 0 603 242 93 0 chr3 142083600 142083761 -85440817 + L1ME1 LINE L1 5985 6160 -6 21 0 0 0 chr3 142083780 142083801 -85440777 + AT_rich Low_complexity Low_complexity 1 21 0 1469 155 136 12 chr3 142083801 142084052 -85440526 - AluJo SINE Alu -30 282 1 625 154 34 43 chr3 142086244 142086361 -85438217 + FLAM_C SINE Alu 2 117 -26 31 26 0 0 chr3 142086362 142086400 -85438178 + AT_rich Low_complexity Low_complexity 1 38 0 1206 134 0 0 chr3 142087809 142087981 -85436597 - AluSg/x SINE Alu -1 311 140 191 302 19 0 chr3 142088790 142088843 -85435735 - L3b LINE CR1 -95 1488 1435 265 182 39 0 chr3 142090003 142090080 -85434498 + L1MC5 LINE L1 7832 7911 -50 267 321 153 52 chr3 142092019 142092268 -85432310 - L2 LINE L2 -4 3268 2995 1778 166 0 7 chr3 142092289 142092597 -85431981 + AluJo SINE Alu 5 310 -2 22 0 0 0 chr3 142092598 142092620 -85431958 + AT_rich Low_complexity Low_complexity 1 22 0 409 239 87 7 chr3 142092773 142092940 -85431638 + L1ME3A LINE L1 5925 6098 -64 24 32 0 0 chr3 142092940 142092971 -85431607 + AT_rich Low_complexity Low_complexity 1 31 0 3375 201 79 30 chr3 142093244 142094223 -85430355 + L1ME1 LINE L1 4488 5581 -585 2432 60 3 0 chr3 142094223 142094522 -85430056 + AluY SINE Alu 1 300 -11 3375 201 79 30 chr3 142094522 142095126 -85429452 + L1ME1 LINE L1 5581 6154 -12 413 329 202 8 chr3 142095126 142095378 -85429200 + L1ME4a LINE L1 5620 5920 -201 190 365 35 0 chr3 142095690 142095775 -85428803 + MIR SINE MIR 67 154 -108 399 268 89 8 chr3 142095798 142095921 -85428657 - MIR SINE MIR -65 197 65 200 31 62 0 chr3 142096407 142096439 -85428139 + A-rich Low_complexity Low_complexity 5 38 0 516 289 121 34 chr3 142096453 142096692 -85427886 + MIR SINE MIR 3 262 0 2542 229 58 36 chr3 142096815 142096960 -85427618 + L1ME1 LINE L1 5421 5561 -605 3041 87 11 37 chr3 142096960 142097420 -85427158 + LTR7 LTR ERV1 1 448 -2 2542 229 58 36 chr3 142097420 142097995 -85426583 + L1ME1 LINE L1 5561 6157 -9 497 183 21 0 chr3 142097995 142098088 -85426490 - AluJ/FLAM SINE Alu -216 96 2 627 342 27 16 chr3 142098111 142098368 -85426210 + MIR SINE MIR 2 261 -1 360 277 69 10 chr3 142098430 142098531 -85426047 + L1ME4a LINE L1 6007 6113 -8 584 304 230 18 chr3 142099864 142100008 -85424570 - L3 LINE CR1 -24 1553 1441 2091 120 0 10 chr3 142100008 142100328 -85424250 + AluSx SINE Alu 1 312 0 584 304 230 18 chr3 142100328 142100730 -85423848 - L3 LINE CR1 -136 1441 891 456 286 97 5 chr3 142101620 142101815 -85422763 + MIR SINE MIR 41 257 -5 238 306 73 40 chr3 142101971 142102095 -85422483 + L2 LINE L2 3184 3311 -2 246 108 0 235 chr3 142102602 142102704 -85421874 - MER116 DNA Mariner -2 78 1 283 334 47 65 chr3 142103055 142103371 -85421207 - L2 LINE L2 -14 3258 2951 1716 167 23 26 chr3 142103371 142103719 -85420859 + L1MC1 LINE L1 5987 6333 0 283 334 47 65 chr3 142103719 142103851 -85420727 - L2 LINE L2 -321 2951 2818 555 182 34 0 chr3 142103863 142104011 -85420567 + GA-rich Low_complexity Low_complexity 1 153 0 206 252 168 19 chr3 142104058 142104165 -85420413 - L2 LINE L2 -340 2974 2852 22 0 0 0 chr3 142105513 142105535 -85419043 + AT_rich Low_complexity Low_complexity 1 22 0 912 161 0 13 chr3 142105540 142105695 -85418883 + AluSq SINE Alu 1 153 -160 462 169 0 0 chr3 142105695 142105778 -85418800 + AluJ/FRAM SINE Alu 226 308 -4 285 280 123 71 chr3 142105843 142106021 -85418557 + MIR SINE MIR 5 184 -63 323 320 104 8 chr3 142107365 142107490 -85417088 + L1MC5 LINE L1 7751 7887 -74 317 225 127 80 chr3 142107525 142107738 -85416840 - L1ME4a LINE L1 -16 6105 5883 2427 58 0 0 chr3 142107913 142108207 -85416371 - AluY SINE Alu -17 294 1 2309 73 3 16 chr3 142109956 142110270 -85414308 - AluSg SINE Alu 0 310 1 182 267 116 23 chr3 142110951 142111037 -85413541 - L2 LINE L2 -11 3302 3209 276 314 81 35 chr3 142111771 142112029 -85412549 - L2 LINE L2 -337 2977 2708 302 191 154 64 chr3 142113358 142113468 -85411110 + L1MEd LINE L1 47 166 -5953 267 31 0 0 chr3 142113512 142113544 -85411034 + (A)n Simple_repeat Simple_repeat 1 32 0 2177 103 0 0 chr3 142113584 142113876 -85410702 + AluSx SINE Alu 1 292 -20 1617 110 0 4 chr3 142114457 142114685 -85409893 + AluSx SINE Alu 1 227 -85 460 210 27 57 chr3 142115614 142115829 -85408749 + MLT1J2 LTR MaLR 263 399 -10 2141 103 0 3 chr3 142115958 142116250 -85408328 + AluSx SINE Alu 1 291 -21 746 293 39 22 chr3 142116258 142116487 -85408091 + MIR SINE MIR 27 259 -3 295 194 125 0 chr3 142116732 142116804 -85407774 + MLT1J1 LTR MaLR 3 83 -363 412 251 49 79 chr3 142116883 142117086 -85407492 + MLT1J1 LTR MaLR 239 435 -11 2210 104 7 0 chr3 142118077 142118386 -85406192 - AluSx SINE Alu -1 311 1 197 317 0 17 chr3 142119529 142119589 -85404989 + MIR SINE MIR 40 98 -110 1386 12 6 18 chr3 142119849 142120015 -85404563 + L1PA3 LINE L1 5992 6155 0 283 248 179 21 chr3 142120478 142120623 -85403955 + MIR SINE MIR 31 196 -59 348 24 0 0 chr3 142120915 142120956 -85403622 + (CA)n Simple_repeat Simple_repeat 2 42 0 1826 160 7 0 chr3 142121999 142122292 -85402286 - AluJb SINE Alu -17 295 1 25 0 0 0 chr3 142122300 142122325 -85402253 + AT_rich Low_complexity Low_complexity 1 25 0 739 191 25 6 chr3 142123022 142123184 -85401394 + L1MD3 LINE L1 7813 7977 -18 2716 125 56 111 chr3 142123460 142124083 -85400495 + L1MB7 LINE L1 5577 6165 -19 1914 120 25 0 chr3 142124337 142124612 -85399966 + AluSx SINE Alu 1 282 -30 352 163 105 35 chr3 142125285 142125371 -85399207 - FLAM_A SINE Alu -2 131 40 727 178 0 0 chr3 142125374 142125492 -85399086 - AluJo/FLAM SINE Alu -184 118 1 337 285 113 43 chr3 142125506 142125762 -85398816 + MARNA DNA Mariner 161 434 -152 201 233 70 0 chr3 142126514 142126557 -85398021 - L2 LINE L2 -11 3261 3216 297 288 93 25 chr3 142126711 142126829 -85397749 - MIR3 SINE MIR -74 134 9 183 276 250 26 chr3 142127036 142127152 -85397426 + MIR3 SINE MIR 6 147 -61 1962 107 27 27 chr3 142127158 142127458 -85397120 + AluSx SINE Alu 1 300 -12 1302 192 23 0 chr3 142127761 142128022 -85396556 + L1MB4 LINE L1 5705 5971 -209 24 67 0 0 chr3 142128073 142128118 -85396460 + AT_rich Low_complexity Low_complexity 1 45 0 1073 176 49 0 chr3 142128118 142128323 -85396255 + L1MB4 LINE L1 5960 6174 -6 283 281 61 85 chr3 142128844 142129008 -85395570 + MIR SINE MIR 103 262 0 873 147 0 0 chr3 142129108 142129237 -85395341 + AluJo SINE Alu 2 130 -172 425 259 214 63 chr3 142129368 142129685 -85394893 + L1ME4a LINE L1 5556 5920 -201 899 192 6 6 chr3 142130220 142130402 -85394176 + AluJo SINE Alu 131 312 0 780 170 85 7 chr3 142130634 142130787 -85393791 + AluJo SINE Alu 135 299 -13 297 0 0 0 chr3 142130802 142130835 -85393743 + (CA)n Simple_repeat Simple_repeat 2 34 0 2197 98 0 0 chr3 142130871 142131166 -85393412 - AluSc SINE Alu -14 295 1 1846 157 17 0 chr3 142132826 142133120 -85391458 - AluSx SINE Alu -13 299 1 527 112 37 9 chr3 142133276 142133383 -85391195 + GA-rich Low_complexity Low_complexity 2 111 0 2367 84 3 0 chr3 142133403 142133712 -85390866 - AluY SINE Alu -1 310 1 1241 159 183 0 chr3 142133814 142134065 -85390513 + L1PA16 LINE L1 5870 6166 0 209 271 171 36 chr3 142134183 142134323 -85390255 - MIR3 SINE MIR -29 179 21 1968 137 3 6 chr3 142134781 142135094 -85389484 - AluJo SINE Alu 0 312 1 1960 118 45 0 chr3 142135302 142135589 -85388989 - AluSx SINE Alu -12 300 1 202 244 0 0 chr3 142136191 142136236 -85388342 - L2 LINE L2 0 3313 3269 525 300 24 12 chr3 142136881 142137051 -85387527 + MLT1J1 LTR MaLR 22 193 -253 2391 108 13 46 chr3 142137174 142137562 -85387016 + THE1C LTR MaLR 1 375 0 1555 150 3 70 chr3 142137804 142138117 -85386461 + AluJo SINE Alu 1 292 -20 1892 146 3 3 chr3 142138600 142138901 -85385677 + AluJb SINE Alu 1 301 -11 185 343 39 20 chr3 142139284 142139386 -85385192 - MIR SINE MIR -40 222 119 375 276 59 79 chr3 142139665 142139753 -85384825 - L2 LINE L2 -7 3306 3221 2186 106 0 0 chr3 142139753 142140054 -85384524 + AluSg1 SINE Alu 1 301 -8 375 276 59 79 chr3 142140054 142140117 -85384461 - L2 LINE L2 -92 3221 3158 1941 134 3 3 chr3 142140199 142140491 -85384087 - AluJb SINE Alu -14 298 7 2154 102 0 3 chr3 142140507 142140800 -85383778 - AluSg SINE Alu -18 292 1 1648 161 19 19 chr3 142140850 142141183 -85383395 + AluJo SINE Alu 1 333 0 477 294 149 0 chr3 142141551 142141752 -85382826 + MIR SINE MIR 5 235 -27 198 103 0 0 chr3 142142036 142142065 -85382513 + (TTCC)n Simple_repeat Simple_repeat 4 32 0 600 200 64 50 chr3 142142070 142142210 -85382368 - FLAM_C SINE Alu 0 143 2 316 298 84 76 chr3 142143157 142143382 -85381196 + L1M4 LINE L1 3661 3887 -2259 905 173 294 40 chr3 142143391 142143639 -85380939 + AluJb SINE Alu 2 312 0 3864 163 29 24 chr3 142143644 142144502 -85380076 + L1MA9 LINE L1 4477 5329 -983 2060 127 3 0 chr3 142144502 142144809 -85379769 + AluSx SINE Alu 1 308 -4 3864 147 56 37 chr3 142144812 142145615 -85378963 + L1MA9 LINE L1 5495 6312 0 3864 163 29 24 chr3 142145615 142145672 -85378906 + L1MA9 LINE L1 5330 6312 0 186 43 0 0 chr3 142146242 142146265 -85378313 + (TTTTC)n Simple_repeat Simple_repeat 3 25 0 1936 142 0 25 chr3 142146267 142146585 -85377993 - AluJo SINE Alu -2 310 1 197 330 57 9 chr3 142146834 142146940 -85377638 - MIR3 SINE MIR -1 207 97 1845 144 3 24 chr3 142147158 142147456 -85377122 - AluSx SINE Alu -20 292 1 228 308 25 58 chr3 142147817 142147937 -85376641 - L2 LINE L2 -3 3269 3154 2100 114 0 3 chr3 142149560 142149858 -85374720 - AluSx SINE Alu -15 297 1 200 301 41 27 chr3 142149916 142149989 -85374589 + L2 LINE L2 3190 3263 -9 267 306 158 0 chr3 142150010 142150148 -85374430 - MIR SINE MIR -68 140 33 3160 154 18 27 chr3 142151327 142151878 -85372700 - MER44D DNA MER2_type 0 605 5 3007 72 45 45 chr3 142152041 142152413 -85372165 + MLT2A1 LTR ERVL 1 375 -69 261 0 0 0 chr3 142152413 142152442 -85372136 + (TG)n Simple_repeat Simple_repeat 2 30 0 3007 72 45 45 chr3 142152442 142152513 -85372065 + MLT2A1 LTR ERVL 374 444 0 790 83 0 106 chr3 142152544 142152722 -85371856 + FLAM_C SINE Alu 2 165 0 707 253 5 25 chr3 142153645 142153843 -85370735 - L1M2 LINE L1 -519 5793 5600 1810 145 17 0 chr3 142153849 142154145 -85370433 - AluJb SINE Alu -5 307 7 449 336 38 43 chr3 142154616 142154851 -85369727 - MIR SINE MIR -6 256 23 262 284 95 0 chr3 142157975 142158070 -85366508 + MIR SINE MIR 104 207 -55 964 200 39 0 chr3 142160913 142161093 -85363485 + MER5A DNA MER1_type 2 188 -1 305 227 53 0 chr3 142161311 142161386 -85363192 + L1MCa LINE L1 2001 2079 -4347 315 212 0 15 chr3 142161431 142161497 -85363081 + L1MC4 LINE L1 6641 6705 -1337 1000 204 114 19 chr3 142161528 142161792 -85362786 + L2 LINE L2 3025 3313 0 357 266 133 56 chr3 142162154 142162297 -85362281 + MIR3 SINE MIR 30 183 -25 369 261 254 8 chr3 142162309 142162443 -85362135 + L2 LINE L2 3106 3272 0 334 153 9 144 chr3 142163547 142163658 -85360920 - MER1B DNA MER1_type -27 312 217 581 188 42 55 chr3 142164833 142164998 -85359580 - L1MC5 LINE L1 -36 7925 7763 1483 154 0 0 chr3 142165736 142165970 -85358608 - AluJo SINE Alu -78 234 1 1615 104 29 7 chr3 142166619 142166898 -85357680 - AluY SINE Alu -21 290 6 303 239 120 34 chr3 142168728 142168845 -85355733 + L1MCa LINE L1 3354 3480 -2946 1047 285 91 54 chr3 142170725 142171209 -85353369 - MLT1K LTR MaLR -48 540 39 1091 162 34 0 chr3 142171250 142171429 -85353149 + MER5A DNA MER1_type 5 189 0 406 260 29 0 chr3 142171437 142171541 -85353037 + MER5B DNA MER1_type 1 107 -71 700 200 0 0 chr3 142171592 142171767 -85352811 + C-rich Low_complexity Low_complexity 1 175 0 298 351 7 18 chr3 142171745 142172074 -85352504 + CT-rich Low_complexity Low_complexity 1 325 0 * 239 133 78 11 chr3 142172698 142172788 -85351790 + (TA)n Simple_repeat Simple_repeat 1 96 0 1772 164 0 3 chr3 142172788 142173074 -85351504 - AluJo SINE Alu -27 285 1 2002 145 3 0 chr3 142173241 142173552 -85351026 + AluSx SINE Alu 1 312 0 767 250 26 36 chr3 142174153 142174457 -85350121 + AluSp SINE Alu 3 303 -10 237 261 0 0 chr3 142175299 142175364 -85349214 + C-rich Low_complexity Low_complexity 1 65 0 805 140 96 13 chr3 142176034 142176191 -85348387 - AluJb SINE Alu -14 298 129 180 143 0 0 chr3 142176507 142176549 -85348029 + (C)n Simple_repeat Simple_repeat 1 42 0 1664 160 0 25 chr3 142176992 142177311 -85347267 - AluY SINE Alu 0 311 1 25 51 0 0 chr3 142178765 142178804 -85345774 + GC_rich Low_complexity Low_complexity 1 39 0 502 283 42 12 chr3 142279046 142279212 -85245366 + MER5B DNA MER1_type 1 171 -7 882 168 0 6 chr3 142279303 142279464 -85245114 + L1PA16 LINE L1 6003 6162 -4 262 352 78 23 chr3 142279898 142280117 -85244461 - L2 LINE L2 -660 2654 2424 2149 129 10 0 chr3 142280382 142280685 -85243893 - AluSx SINE Alu -6 306 1 950 170 28 16 chr3 142280781 142280963 -85243615 - MER58A DNA MER1_type 0 224 41 269 71 0 0 chr3 142280964 142281006 -85243572 + L1MB5 LINE L1 6126 6167 -7 302 193 0 18 chr3 142281009 142281066 -85243512 - MER58A DNA MER1_type -168 56 1 659 189 19 31 chr3 142281185 142281344 -85243234 + MIR SINE MIR 48 204 -58 209 244 24 61 chr3 142281977 142282059 -85242519 - MER5A DNA MER1_type -103 86 8 275 260 14 14 chr3 142282553 142282626 -85241952 - L2 LINE L2 -2 3270 3198 553 299 119 52 chr3 142283156 142283180 -85241398 - L1ME3A LINE L1 -5 6165 6144 2416 116 6 3 chr3 142283180 142283543 -85241035 - THE1B LTR MaLR 0 364 1 553 299 119 52 chr3 142283543 142283979 -85240599 - L1ME3A LINE L1 -26 6144 5674 427 300 0 100 chr3 142284069 142284269 -85240309 + MIR SINE MIR 28 207 -55 1783 163 11 25 chr3 142284303 142284586 -85239992 + AluJo SINE Alu 1 279 -33 21 82 0 0 chr3 142284586 142284635 -85239943 + AT_rich Low_complexity Low_complexity 1 49 0 1599 224 66 7 chr3 142286001 142286438 -85238140 + MLT1C LTR MaLR 5 467 0 782 312 194 46 chr3 142286600 142288100 -85236478 + L2 LINE L2 1527 3272 0 197 287 19 65 chr3 142288603 142288711 -85235867 - MIR SINE MIR -70 192 90 296 244 93 0 chr3 142288883 142288969 -85235609 - MIR3 SINE MIR -10 198 105 675 239 74 26 chr3 142289018 142289248 -85235330 + MLT1J1 LTR MaLR 4 244 -202 562 178 0 0 chr3 142289420 142289510 -85235068 + 5S rRNA rRNA 1 90 -31 256 277 48 12 chr3 142289555 142289638 -85234940 - MIR3 SINE MIR -8 200 115 195 341 59 0 chr3 142289717 142289802 -85234776 - L3b LINE CR1 -213 1370 1281 25 31 0 0 chr3 142291670 142291702 -85232876 + GC_rich Low_complexity Low_complexity 1 32 0 23 68 0 0 chr3 142291764 142291808 -85232770 + GC_rich Low_complexity Low_complexity 1 44 0 39 60 0 0 chr3 142291875 142291942 -85232636 + GC_rich Low_complexity Low_complexity 1 67 0 264 149 0 0 chr3 142291995 142292042 -85232536 + (CTG)n Simple_repeat Simple_repeat 3 49 0 35 71 0 0 chr3 142292139 142292209 -85232369 + GC_rich Low_complexity Low_complexity 1 70 0 324 248 58 73 chr3 142293039 142293176 -85231402 + MIR SINE MIR 84 218 -44 255 311 28 28 chr3 142294622 142294728 -85229850 - L3 LINE CR1 -10 1567 1462 924 281 100 40 chr3 142295046 142295687 -85228891 + L1ME4a LINE L1 5255 5945 -176 816 283 20 32 chr3 142296236 142296487 -85228091 + MIR SINE MIR 13 260 -2 590 269 148 0 chr3 142298044 142298226 -85226352 - MIR SINE MIR -7 255 47 195 69 0 0 chr3 142298291 142298320 -85226258 + (A)n Simple_repeat Simple_repeat 1 29 0 194 243 100 29 chr3 142298409 142298479 -85226099 + MIR SINE MIR 25 99 -163 191 264 19 19 chr3 142298457 142298510 -85226068 + L3 LINE CR1 1510 1562 -15 * 216 326 163 14 chr3 142298561 142298782 -85225796 - L2 LINE L2 -926 2388 2135 426 257 59 1 chr3 142299419 142299568 -85225010 - MIR3 SINE MIR -62 146 6 324 171 0 29 chr3 142299862 142299932 -85224646 + L1M3 LINE L1 5450 5517 -654 297 0 0 0 chr3 142300621 142300654 -85223924 + (CA)n Simple_repeat Simple_repeat 2 34 0 5173 113 31 65 chr3 142300673 142301609 -85222969 - Tigger3b DNA MER2_type 0 1231 328 1944 114 43 71 chr3 142301690 142301741 -85222837 - Tigger3b DNA MER2_type -889 342 291 2110 129 0 13 chr3 142301741 142302051 -85222527 + AluSx SINE Alu 1 306 -6 1944 114 43 71 chr3 142302051 142302351 -85222227 - Tigger3b DNA MER2_type -940 291 1 1020 257 118 36 chr3 142302356 142302745 -85221833 + MARNA DNA Mariner 76 496 -90 1239 288 53 9 chr3 142302825 142303255 -85221323 + MLT1J2 LTR MaLR 2 450 0 1609 174 3 27 chr3 142304303 142304625 -85219953 + AluJo SINE Alu 1 315 0 544 261 17 6 chr3 142305066 142305236 -85219342 - MIR SINE MIR -61 201 30 2267 186 34 24 chr3 142305576 142306075 -85218503 + MLT1D LTR MaLR 1 504 -1 297 233 0 0 chr3 142307656 142307746 -85216832 + (TGGA)n Simple_repeat Simple_repeat 4 93 0 1068 253 104 27 chr3 142308792 142308879 -85215699 - L1ME1 LINE L1 -41 6125 6046 2206 119 0 0 chr3 142308879 142309191 -85215387 + AluSx SINE Alu 1 312 0 1068 253 104 27 chr3 142309191 142309507 -85215071 - L1ME1 LINE L1 -120 6046 5691 1741 161 31 0 chr3 142309805 142310096 -85214482 + AluJb SINE Alu 1 300 -12 1649 220 72 35 chr3 142311206 142311693 -85212885 + MLT1D LTR MaLR 1 505 0 1075 166 0 0 chr3 142311728 142311897 -85212681 + FRAM SINE Alu 1 161 -15 608 234 25 86 chr3 142312155 142312290 -85212288 + MER5A DNA MER1_type 1 122 -67 2271 88 0 3 chr3 142312290 142312586 -85211992 - AluSq SINE Alu -18 295 1 608 234 25 86 chr3 142312586 142312647 -85211931 + MER5A DNA MER1_type 122 185 -4 1464 228 138 19 chr3 142312974 142313439 -85211139 + L1MC4a LINE L1 5596 6115 -1693 27 49 0 0 chr3 142313460 142313501 -85211077 + AT_rich Low_complexity Low_complexity 1 41 0 2258 108 0 0 chr3 142313724 142314031 -85210547 + AluSg SINE Alu 1 307 -3 244 329 13 0 chr3 142315023 142315102 -85209476 + MIR SINE MIR 56 135 -73 189 151 57 94 chr3 142315313 142315366 -85209212 - L3 LINE CR1 -1116 461 411 1935 148 7 0 chr3 142315848 142316158 -85208420 - AluSx SINE Alu 0 312 1 1635 154 82 0 chr3 142316184 142316464 -85208114 - AluSx SINE Alu -9 303 1 541 117 0 125 chr3 142317273 142317376 -85207202 + L1MB3 LINE L1 6072 6160 -23 2144 114 7 0 chr3 142317376 142317675 -85206903 - AluSx SINE Alu -11 301 1 541 117 0 125 chr3 142317675 142317691 -85206887 + L1MB3 LINE L1 6160 6176 -7 323 253 63 11 chr3 142317707 142317802 -85206776 + MER117 DNA MER1_type 76 175 -22 2257 96 0 0 chr3 142319963 142320266 -85204312 - AluSg SINE Alu -6 304 2 207 0 0 0 chr3 142320270 142320293 -85204285 + (T)n Simple_repeat Simple_repeat 1 23 0 247 83 0 62 chr3 142320403 142320451 -85204127 - L1MA10 LINE L1 -2 6332 6288 1667 256 87 32 chr3 142320451 142320982 -85203596 + MER74B LTR ERVL 56 615 -7 319 176 59 29 chr3 142321013 142321081 -85203497 + Tigger5 DNA MER2_type 2254 2323 0 381 43 0 0 chr3 142321118 142321165 -85203413 + (TA)n Simple_repeat Simple_repeat 2 48 0 297 239 31 85 chr3 142321241 142321371 -85203207 - L1ME1 LINE L1 -98 6068 5946 2985 190 39 21 chr3 142321384 142322106 -85202472 - L1ME1 LINE L1 -956 5190 4456 * 3772 212 27 46 chr3 142322101 142323064 -85201514 - L1ME1 LINE L1 -2260 3886 2863 685 183 0 63 chr3 142323064 142323206 -85201372 - FLAM_A SINE Alu 0 133 1 3772 212 27 46 chr3 142323206 142323637 -85200941 - L1ME1 LINE L1 -3283 2863 2425 305 279 221 0 chr3 142324529 142324683 -85199895 - MIR SINE MIR -55 207 20 316 173 53 40 chr3 142324700 142324775 -85199803 + MIR3 SINE MIR 117 192 -16 21 0 0 0 chr3 142324888 142324909 -85199669 + AT_rich Low_complexity Low_complexity 1 21 0 2202 113 0 0 chr3 142325678 142325979 -85198599 + AluSx SINE Alu 1 301 -11 198 404 64 21 chr3 142326115 142326256 -85198322 - L2 LINE L2 -461 2853 2707 782 305 195 23 chr3 142327104 142327622 -85196956 + L2 LINE L2 2355 2961 -353 339 283 29 29 chr3 142327630 142327768 -85196810 - L2 LINE L2 -342 2971 2834 466 255 22 23 chr3 142328578 142328727 -85195851 + MIR SINE MIR 8 155 -63 506 288 134 34 chr3 142329174 142329532 -85195046 + MARNA DNA Mariner 8 401 -185 769 157 7 41 chr3 142329552 142329686 -85194892 + FLAM_C SINE Alu 2 139 -173 366 23 0 0 chr3 142329686 142329729 -85194849 + (TG)n Simple_repeat Simple_repeat 2 44 0 198 103 0 0 chr3 142329728 142329757 -85194821 + (CATATA)n Simple_repeat Simple_repeat 5 33 0 * 769 157 7 41 chr3 142329729 142329769 -85194809 + FLAM_C SINE Alu 139 143 -169 329 301 75 7 chr3 142329774 142329920 -85194658 + MARNA DNA Mariner 420 575 -11 396 270 35 50 chr3 142329948 142330168 -85194410 + MIR SINE MIR 1 217 -45 423 228 69 24 chr3 142330201 142330349 -85194229 + MIR SINE MIR 76 225 -37 216 194 0 0 chr3 142330639 142330675 -85193903 - L2 LINE L2 -9 3263 3228 233 226 196 29 chr3 142330765 142330867 -85193711 - L2 LINE L2 -222 3050 2932 218 200 0 0 chr3 142331135 142331175 -85193403 + CT-rich Low_complexity Low_complexity 2 41 0 885 256 30 5 chr3 142331449 142331652 -85192926 + MIR SINE MIR 34 241 -21 195 335 168 32 chr3 142333479 142333664 -85190914 + L2 LINE L2 3044 3253 -19 1238 117 0 6 chr3 142333670 142333850 -85190728 - AluSg/x SINE Alu -7 305 127 297 0 0 0 chr3 142334626 142334659 -85189919 + (GA)n Simple_repeat Simple_repeat 1 33 0 216 97 0 0 chr3 142334918 142334949 -85189629 + (A)n Simple_repeat Simple_repeat 1 31 0 2077 107 0 3 chr3 142335138 142335473 -85189105 + AluSx SINE Alu 1 312 0 296 296 20 10 chr3 142335681 142335779 -85188799 - MIR SINE MIR -3 259 161 285 274 68 0 chr3 142337018 142337091 -85187487 - MIR3 SINE MIR -4 204 127 23 0 0 0 chr3 142337891 142337914 -85186664 + AT_rich Low_complexity Low_complexity 1 23 0 2111 86 0 0 chr3 142338949 142339217 -85185361 + AluSq SINE Alu 1 268 -45 184 330 156 53 chr3 142340221 142340618 -85183960 + L2 LINE L2 2425 2862 -452 373 311 164 27 chr3 142340775 142340958 -85183620 + MIR SINE MIR 49 256 -6 2102 107 0 7 chr3 142341839 142342130 -85182448 + AluSq SINE Alu 1 289 -24 463 285 77 50 chr3 142342551 142342891 -85181687 + L1ME4a LINE L1 5617 5965 -156 383 258 61 91 chr3 142342897 142343095 -85181483 - MIR SINE MIR -49 213 22 875 152 0 22 chr3 142343885 142344069 -85180509 + (CA)n Simple_repeat Simple_repeat 1 180 0 1028 174 134 8 chr3 142344130 142344383 -85180195 - MER33 DNA MER1_type -22 302 18 729 300 58 43 chr3 142345342 142345826 -85178752 + L1MEd LINE L1 44 534 -5585 402 132 0 110 chr3 142345855 142345924 -85178654 + L1MB7 LINE L1 6086 6144 -40 2080 135 3 32 chr3 142345924 142346271 -85178307 + MER1B DNA MER1_type 1 337 0 402 132 0 110 chr3 142346271 142346292 -85178286 + L1MB7 LINE L1 6144 6166 -18 541 117 0 125 chr3 142347056 142347159 -85177419 + L1MB3 LINE L1 6072 6160 -23 2160 110 7 0 chr3 142347159 142347458 -85177120 - AluSx SINE Alu -11 301 1 541 117 0 125 chr3 142347458 142347474 -85177104 + L1MB3 LINE L1 6160 6176 -7 323 253 63 11 chr3 142347490 142347585 -85176993 + MER117 DNA MER1_type 76 175 -22 695 122 0 0 chr3 142349746 142349853 -85174725 - AluSg/x SINE Alu -4 306 200 3334 212 48 33 chr3 142349853 142350132 -85174446 - L1MEc LINE L1 -3034 3181 2908 685 183 0 63 chr3 142350132 142350274 -85174304 - FLAM_A SINE Alu 0 133 1 3334 212 48 33 chr3 142350274 142351330 -85173248 - L1MEc LINE L1 -3307 2908 1874 28 0 0 0 chr3 142352934 142352962 -85171616 + AT_rich Low_complexity Low_complexity 1 28 0 1316 138 25 0 chr3 142352967 142353170 -85171408 - L1PB4 LINE L1 -62 6094 5887 261 279 193 72 chr3 142353422 142353841 -85170737 + L2 LINE L2 2828 3297 -16 825 340 42 25 chr3 142353894 142354374 -85170204 + L2 LINE L2 530 1017 -2297 3362 263 113 4 chr3 142354474 142355556 -85169022 + L2 LINE L2 1420 2619 -695 676 256 43 93 chr3 142355561 142355862 -85168716 + MLT1J2 LTR MaLR 47 332 -118 1280 287 90 29 chr3 142355923 142356580 -85167998 + L2 LINE L2 2621 3313 0 305 267 95 17 chr3 142356907 142357023 -85167555 + L2 LINE L2 3113 3237 -76 29 47 0 0 chr3 142357067 142357110 -85167468 + AT_rich Low_complexity Low_complexity 1 43 0 1986 114 0 23 chr3 142357168 142357476 -85167102 + AluSc SINE Alu 1 301 -8 459 0 0 0 chr3 142357594 142357645 -85166933 + (TG)n Simple_repeat Simple_repeat 2 52 0 34 55 0 0 chr3 142358140 142358195 -85166383 + AT_rich Low_complexity Low_complexity 1 55 0 287 323 65 0 chr3 142358315 142358439 -85166139 - L1ME LINE L1 -364 5806 5675 373 315 94 30 chr3 142358578 142358621 -85165957 + L1M4b LINE L1 11 50 -6809 351 0 0 0 chr3 142358621 142358660 -85165918 + (CA)n Simple_repeat Simple_repeat 1 39 0 373 315 94 30 chr3 142358660 142358819 -85165759 + L1M4b LINE L1 50 226 -6633 1764 233 35 58 chr3 142359304 142359712 -85164866 + L1M4b LINE L1 1206 1597 -5258 2093 120 7 0 chr3 142359712 142360013 -85164565 + AluSq SINE Alu 1 303 -10 1764 233 35 58 chr3 142360013 142360346 -85164232 + L1M4b LINE L1 1597 1936 -4919 22 0 0 0 chr3 142360421 142360443 -85164135 + AT_rich Low_complexity Low_complexity 1 22 0 213 39 0 0 chr3 142362219 142362245 -85162333 + (TCCA)n Simple_repeat Simple_repeat 1 26 0 184 281 83 42 chr3 142362247 142362343 -85162235 - L2 LINE L2 -15 3257 3158 1951 112 0 7 chr3 142363194 142363480 -85161098 - AluSx SINE Alu -18 294 11 193 182 0 0 chr3 142363827 142363860 -85160718 - L2 LINE L2 -16 3256 3224 2295 102 0 3 chr3 142364004 142364317 -85160261 + AluSq SINE Alu 2 313 0 1736 148 0 32 chr3 142366081 142366365 -85158213 + AluJb SINE Alu 14 288 -24 34 24 0 0 chr3 142366366 142366407 -85158171 + AT_rich Low_complexity Low_complexity 1 41 0 1825 145 0 17 chr3 142367105 142367402 -85157176 + AluJb SINE Alu 1 292 -20 742 107 29 0 chr3 142367860 142367963 -85156615 - U6 snRNA snRNA 0 107 2 180 398 50 6 chr3 142368170 142368331 -85156247 + MIR3 SINE MIR 16 183 -25 559 306 47 12 chr3 142368841 142369011 -85155567 - MIR SINE MIR -79 183 8 750 291 41 25 chr3 142370296 142370540 -85154038 - MIR SINE MIR -13 249 2 731 291 147 12 chr3 142370647 142371077 -85153501 + L1ME4a LINE L1 5607 6094 -27 201 39 0 0 chr3 142371106 142371132 -85153446 + (TTTTTG)n Simple_repeat Simple_repeat 2 27 0 342 264 84 50 chr3 142371518 142371757 -85152821 + HAL1 LINE L1 838 1084 -1423 321 159 86 33 chr3 142371764 142371787 -85152791 + AluSg/x SINE Alu 134 154 -148 600 169 29 88 chr3 142371787 142371855 -85152723 + AluJo/FLAM SINE Alu 1 59 -243 1866 148 20 3 chr3 142371855 142372158 -85152420 + AluSx SINE Alu 1 308 -4 600 169 29 88 chr3 142372158 142372225 -85152353 + AluJo/FLAM SINE Alu 59 128 -174 321 159 86 33 chr3 142372225 142372278 -85152300 + AluSg/x SINE Alu 154 190 -112 * 2068 109 24 28 chr3 142372237 142372575 -85152003 - THE1B LTR MaLR -21 334 1 2138 107 3 10 chr3 142373080 142373389 -85151189 - AluSx SINE Alu -5 307 1 407 234 91 19 chr3 142373728 142373882 -85150696 + MER103 DNA DNA 1 165 -1 2158 101 0 3 chr3 142374050 142374348 -85150230 + AluSx SINE Alu 12 308 -4 694 285 16 11 chr3 142374356 142374542 -85150036 - MIR3 SINE MIR -6 202 16 441 271 68 0 chr3 142375706 142375839 -85148739 + MIR SINE MIR 111 252 -10 423 206 65 0 chr3 142376187 142376279 -85148299 + MIR SINE MIR 63 160 -102 584 242 168 0 chr3 142376281 142376430 -85148148 - MER69A DNA AcHobo -3 174 1 25 99 0 0 chr3 142376567 142376648 -85147930 + AT_rich Low_complexity Low_complexity 1 81 0 2133 92 18 0 chr3 142376649 142376933 -85147645 - AluSc SINE Alu -20 289 1 2730 3 0 0 chr3 142376941 142377243 -85147335 - AluYa5 SINE Alu -9 302 1 1118 144 0 0 chr3 142377243 142377410 -85147168 - AluSg/x SINE Alu -12 300 134 219 267 38 57 chr3 142378677 142378782 -85145796 + MIR3 SINE MIR 61 163 -45 1997 138 0 22 chr3 142379066 142379385 -85145193 + AluSx SINE Alu 1 312 0 552 228 95 38 chr3 142380096 142380151 -85144427 - MER45A DNA AcHobo -1414 167 117 2115 113 0 3 chr3 142380151 142380451 -85144127 - AluSx SINE Alu -13 299 1 552 228 95 38 chr3 142380451 142380553 -85144025 - MER45A DNA AcHobo -1464 117 1 1109 295 163 23 chr3 142381135 142381953 -85142625 - L2 LINE L2 -672 2642 1711 2373 235 57 42 chr3 142381998 142382108 -85142470 - L1ME1 LINE L1 -5 6161 6054 294 29 0 0 chr3 142382108 142382143 -85142435 + (CA)n Simple_repeat Simple_repeat 2 36 0 1271 179 48 45 chr3 142382144 142382287 -85142291 - AluJb SINE Alu -20 292 151 1553 89 0 0 chr3 142382287 142382489 -85142089 - AluSx SINE Alu -110 202 1 1271 179 48 45 chr3 142382489 142382636 -85141942 - AluJb SINE Alu -161 151 1 2373 235 57 42 chr3 142382636 142382869 -85141709 - L1ME1 LINE L1 -112 6054 5826 1974 119 0 26 chr3 142382869 142383171 -85141407 - AluSx SINE Alu -18 294 1 2373 235 57 42 chr3 142383171 142383522 -85141056 - L1ME1 LINE L1 -340 5826 5453 476 110 0 27 chr3 142384202 142384275 -85140303 + FLAM SINE Alu 63 133 -10 25 0 0 0 chr3 142385983 142386008 -85138570 + AT_rich Low_complexity Low_complexity 1 25 0 299 241 0 0 chr3 142386659 142386738 -85137840 + (CA)n Simple_repeat Simple_repeat 1 79 0 2034 116 3 28 chr3 142386881 142387201 -85137377 + AluSx SINE Alu 1 312 0 280 280 32 24 chr3 142387329 142387454 -85137124 + L1ME4a LINE L1 5927 6052 -69 1191 184 117 0 chr3 142387487 142387607 -85136971 + AluJo SINE Alu 1 106 -206 396 0 0 0 chr3 142387607 142387651 -85136927 + (CA)n Simple_repeat Simple_repeat 2 45 0 1191 184 117 0 chr3 142387651 142387769 -85136809 + AluJo SINE Alu 106 267 -45 225 268 0 18 chr3 142389054 142389110 -85135468 - MIR SINE MIR -76 132 78 885 192 0 33 chr3 142389463 142389645 -85134933 - FRAM SINE Alu 0 176 1 208 97 0 81 chr3 142390423 142390485 -85134093 + (CTGGGG)n Simple_repeat Simple_repeat 5 61 0 217 333 27 0 chr3 142391328 142391403 -85133175 + MIR SINE MIR 36 112 -96 197 337 30 0 chr3 142391421 142391522 -85133056 - MER5A DNA MER1_type -83 106 3 223 314 37 43 chr3 142391777 142391952 -85132626 - MIR3 SINE MIR -1 207 32 527 136 117 10 chr3 142392982 142393085 -85131493 - MIR SINE MIR -41 221 108 304 285 161 7 chr3 142393813 142393950 -85130628 - MIR3 SINE MIR -2 206 49 256 346 24 39 chr3 142393974 142394101 -85130477 + L2 LINE L2 3095 3219 -53 2238 0 187 10 chr3 142394102 142394340 -85130238 + L1MB4 LINE L1 5676 5870 -310 1805 136 41 58 chr3 142394340 142394578 -85130000 - MER44D DNA MER2_type -1882 609 368 1870 153 0 6 chr3 142394578 142394891 -85129687 - AluJb SINE Alu -1 311 1 1805 136 41 58 chr3 142394891 142394997 -85129581 - MER44D DNA MER2_type -2123 368 1 2238 0 187 10 chr3 142394997 142395221 -85129357 + L1MB4 LINE L1 5870 6180 0 210 37 0 0 chr3 142395228 142395255 -85129323 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 911 150 0 18 chr3 142395448 142395615 -85128963 - AluJb SINE Alu -60 252 89 617 345 40 4 chr3 142396668 142396917 -85127661 - MIR SINE MIR 0 262 5 314 380 12 6 chr3 142398446 142398609 -85125969 + GA-rich Low_complexity Low_complexity 6 169 0 198 222 12 111 chr3 142399629 142399710 -85124868 - MER5A DNA MER1_type 0 189 117 204 174 0 43 chr3 142399914 142399960 -85124618 + CT-rich Low_complexity Low_complexity 1 44 0 562 237 93 0 chr3 142400665 142400804 -85123774 - MIR SINE MIR -64 198 47 314 306 104 15 chr3 142401423 142401557 -85123021 - MIR SINE MIR -49 213 68 249 294 76 0 chr3 142401610 142401702 -85122876 + L2 LINE L2 3202 3300 -13 209 330 80 27 chr3 142401941 142402053 -85122525 - L2 LINE L2 -2 3270 3153 759 117 0 0 chr3 142402382 142402517 -85122061 - AluSx SINE Alu 0 317 183 608 182 0 0 chr3 142402526 142402625 -85121953 - Tigger7 DNA MER2_type -268 2219 2121 1312 111 0 0 chr3 142402628 142402808 -85121770 - AluSx SINE Alu -132 180 1 227 235 143 20 chr3 142402831 142402929 -85121649 - MIR SINE MIR -67 141 32 645 288 82 12 chr3 142403078 142403321 -85121257 + MIR SINE MIR 1 260 -2 2303 142 17 0 chr3 142403331 142403684 -85120894 - Tigger7 DNA MER2_type -7 2580 2222 1426 197 45 14 chr3 142403682 142403971 -85120607 - Tigger7 DNA MER2_type -435 298 1 * 2189 57 71 0 chr3 142404250 142404533 -85120045 + AluY SINE Alu 1 303 -8 32 67 0 0 chr3 142405931 142405991 -85118587 + AT_rich Low_complexity Low_complexity 1 60 0 365 219 0 0 chr3 142406070 142406134 -85118444 - Tigger5 DNA MER2_type 0 2323 2260 420 353 120 12 chr3 142406313 142406713 -85117865 + L2 LINE L2 2825 3267 -5 2256 102 0 0 chr3 142406975 142407279 -85117299 - AluSx SINE Alu -6 306 3 1122 252 34 37 chr3 142407946 142408029 -85116549 + HAL1 LINE L1 1 83 -2424 894 122 0 0 chr3 142408029 142408152 -85116426 - FLAM_C SINE Alu -6 127 5 1122 252 34 37 chr3 142408152 142408393 -85116185 + HAL1 LINE L1 83 324 -2183 371 58 0 19 chr3 142408396 142408448 -85116130 - Alu SINE Alu -249 53 3 1642 141 60 11 chr3 142408718 142409002 -85115576 - AluJo SINE Alu -12 300 3 694 188 84 7 chr3 142409031 142409185 -85115393 + MIR SINE MIR 92 257 -5 288 296 35 49 chr3 142410990 142411132 -85113446 - L2 LINE L2 0 3272 3133 202 279 29 29 chr3 142411643 142411747 -85112831 + (CAGAGA)n Simple_repeat Simple_repeat 2 105 0 * 236 341 0 0 chr3 142411670 142411752 -85112826 + GA-rich Low_complexity Low_complexity 3 84 0 1739 167 23 10 chr3 142411781 142412086 -85112492 + AluJb SINE Alu 1 309 -3 2240 59 40 20 chr3 142412086 142412389 -85112189 + AluY SINE Alu 1 310 -1 616 279 99 15 chr3 142412999 142413200 -85111378 + MIR SINE MIR 25 242 -20 567 157 84 60 chr3 142413525 142413691 -85110887 - MER5B DNA MER1_type -4 174 5 209 306 0 72 chr3 142413802 142413913 -85110665 + MIR SINE MIR 90 192 -70 188 302 19 0 chr3 142414480 142414533 -85110045 - L2 LINE L2 -1 3271 3218 209 357 29 43 chr3 142415117 142415257 -85109321 + L2 LINE L2 2602 2739 -575 302 273 34 34 chr3 142415460 142415548 -85109030 + L1ME2 LINE L1 5808 5895 -269 1977 119 14 0 chr3 142415912 142416205 -85108373 - AluSx SINE Alu -15 297 1 204 298 48 36 chr3 142416354 142416438 -85108140 - MIR SINE MIR -97 165 81 787 280 83 55 chr3 142418291 142419268 -85105310 + L1MC4a LINE L1 500 952 -1555 2491 55 0 3 chr3 142419392 142419702 -85104876 + AluY SINE Alu 1 309 -2 228 173 96 0 chr3 142419920 142419972 -85104606 + MLT1F LTR MaLR 1 57 -533 6434 13 0 0 chr3 142419972 142420684 -85103894 + L1HS LINE L1 5444 6155 0 303 130 0 0 chr3 142420686 142420740 -85103838 + (A)n Simple_repeat Simple_repeat 1 54 0 2044 128 0 0 chr3 142420752 142421049 -85103529 + AluSq SINE Alu 1 297 -16 279 79 0 0 chr3 142421063 142421101 -85103477 + (TC)n Simple_repeat Simple_repeat 1 38 0 1423 208 89 20 chr3 142421102 142421449 -85103129 + MLT1F LTR MaLR 171 541 -1 2152 124 0 0 chr3 142421657 142421963 -85102615 + AluSq SINE Alu 1 306 -7 5813 159 56 29 chr3 142421972 142422569 -85102009 + L1MC2 LINE L1 4696 5275 -1069 2102 113 0 3 chr3 142422569 142422869 -85101709 + AluSx SINE Alu 1 299 -13 5813 159 56 29 chr3 142422869 142422882 -85101696 + L1MC2 LINE L1 5275 5286 -1058 192 40 0 0 chr3 142422882 142422907 -85101671 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5813 159 56 29 chr3 142422907 142423898 -85100680 + L1MC2 LINE L1 5286 6344 0 347 277 128 20 chr3 142423921 142424069 -85100509 - L1ME4a LINE L1 -65 6056 5893 959 99 15 0 chr3 142425000 142425131 -85099447 - AluSq/x SINE Alu -180 133 1 7696 24 2 1 chr3 142425163 142426248 -85098330 + L1PA4 LINE L1 5069 6155 0 831 178 70 152 chr3 142427182 142427610 -85096968 + LTR37B LTR ERV1 10 402 -66 324 209 0 0 chr3 142427665 142427732 -85096846 + LTR37A LTR ERV1 346 412 -14 339 65 0 0 chr3 142428465 142428511 -85096067 + (GA)n Simple_repeat Simple_repeat 1 46 0 582 254 243 0 chr3 142428988 142429169 -85095409 + MIR SINE MIR 9 233 -29 611 202 0 8 chr3 142429183 142429302 -85095276 + AluJb SINE Alu 13 130 -182 1554 191 3 10 chr3 142429310 142429613 -85094965 + AluJo SINE Alu 2 302 -10 2167 104 0 3 chr3 142429775 142430072 -85094506 - AluSg SINE Alu -14 296 1 2150 104 7 0 chr3 142431218 142431537 -85093041 - AluSx SINE Alu 0 312 1 1084 196 32 18 chr3 142431599 142431819 -85092759 + MER58A DNA MER1_type 2 224 0 871 265 75 6 chr3 142431956 142432303 -85092275 + L1M4 LINE L1 3035 3405 -2741 2364 71 7 7 chr3 142432305 142432615 -85091963 + AluYb8 SINE Alu 1 310 -8 660 278 143 5 chr3 142432697 142432920 -85091658 + MIR SINE MIR 9 262 0 188 335 113 49 chr3 142433808 142434214 -85090364 - L2 LINE L2 -337 2977 2546 423 273 131 26 chr3 142434258 142434525 -85090053 + HAL1 LINE L1 2 296 -2211 757 329 25 39 chr3 142434674 142435036 -85089542 + HAL1 LINE L1 472 828 -1679 913 185 0 0 chr3 142435056 142435207 -85089371 - AluJb SINE Alu -30 282 132 1488 201 3 3 chr3 142435216 142435505 -85089073 - AluJo SINE Alu -22 290 2 338 204 63 178 chr3 142435506 142435679 -85088899 + HAL1 LINE L1 812 1003 -1504 1771 172 0 10 chr3 142435679 142435982 -85088596 - AluJo SINE Alu -12 300 1 338 204 63 178 chr3 142435982 142436152 -85088426 + HAL1 LINE L1 1003 1073 -1434 638 269 129 65 chr3 142436152 142436632 -85087946 + MLT1J LTR MaLR 1 511 0 338 204 63 178 chr3 142436632 142436827 -85087751 + HAL1 LINE L1 1073 1289 -1218 1217 279 56 53 chr3 142436896 142437319 -85087259 + HAL1 LINE L1 1815 2242 -265 1865 95 0 0 chr3 142437319 142437562 -85087016 + AluSq SINE Alu 1 243 -70 1217 279 56 53 chr3 142437562 142437829 -85086749 + HAL1 LINE L1 2242 2507 0 22 0 0 0 chr3 142437829 142437851 -85086727 + AT_rich Low_complexity Low_complexity 1 22 0 789 145 0 0 chr3 142437924 142438048 -85086530 - AluSg/x SINE Alu -2 308 185 1085 80 0 9 chr3 142438048 142438222 -85086356 - AluSq SINE Alu -86 227 1 286 237 211 18 chr3 142439817 142439931 -85084647 + MIR SINE MIR 125 260 -2 1828 168 0 0 chr3 142439936 142440240 -85084338 - AluJo SINE Alu -8 304 1 1460 246 123 9 chr3 142440564 142440994 -85083584 + L2 LINE L2 1881 2359 -955 665 204 172 0 chr3 142442115 142442272 -85082306 - MER5A DNA MER1_type 0 189 6 324 359 82 16 chr3 142442547 142442792 -85081786 + L2 LINE L2 2963 3223 -49 507 178 10 30 chr3 142444387 142444488 -85080090 - MER5B DNA MER1_type -75 103 5 304 308 113 75 chr3 142445461 142445639 -85078939 - L1ME4a LINE L1 -21 6100 5903 2167 104 0 3 chr3 142445639 142445936 -85078642 + AluSg SINE Alu 1 296 -14 304 308 113 75 chr3 142445936 142446075 -85078503 - L1ME4a LINE L1 -218 5903 5771 1830 165 0 7 chr3 142446098 142446401 -85078177 - AluJo SINE Alu -10 302 2 901 122 0 8 chr3 142446409 142446540 -85078038 - AluJb SINE Alu -182 130 1 657 307 93 34 chr3 142446549 142446807 -85077771 - L1 LINE L1 -2819 3327 3033 2837 9 0 0 chr3 142446807 142447125 -85077453 - AluYb8 SINE Alu 0 318 1 657 307 93 34 chr3 142447125 142447283 -85077295 - L1 LINE L1 -3113 3033 2886 21 0 0 0 chr3 142447752 142447773 -85076805 + AT_rich Low_complexity Low_complexity 1 21 0 1596 138 8 0 chr3 142447775 142448015 -85076563 - AluSx SINE Alu -51 261 20 582 254 243 0 chr3 142448036 142448217 -85076361 - MIR SINE MIR -29 233 9 213 94 0 0 chr3 142448694 142448726 -85075852 + (TC)n Simple_repeat Simple_repeat 1 32 0 324 209 0 0 chr3 142449459 142449526 -85075052 - LTR37A LTR ERV1 -14 412 346 831 178 70 152 chr3 142449581 142450009 -85074569 - LTR37B LTR ERV1 -66 402 10 1254 85 6 6 chr3 142450943 142451119 -85073459 - L1PA5 LINE L1 0 6154 5979 798 280 81 54 chr3 142451993 142452971 -85071607 + L1MC4a LINE L1 500 952 -1555 2471 61 0 3 chr3 142453095 142453405 -85071173 + AluY SINE Alu 1 309 -2 241 288 0 0 chr3 142453624 142453684 -85070894 + MLT1F LTR MaLR 5 67 -500 2135 117 0 0 chr3 142453684 142453984 -85070594 + AluSq SINE Alu 1 300 -13 241 288 0 0 chr3 142453984 142453996 -85070582 + MLT1F LTR MaLR 66 77 -490 270 81 0 0 chr3 142453999 142454036 -85070542 + (TC)n Simple_repeat Simple_repeat 1 37 0 1423 208 89 20 chr3 142454037 142454384 -85070194 + MLT1F LTR MaLR 171 541 -1 2126 128 0 0 chr3 142454592 142454898 -85069680 + AluSq SINE Alu 1 306 -7 5813 161 57 28 chr3 142454907 142455502 -85069076 + L1MC2 LINE L1 4696 5272 -1072 2045 117 3 3 chr3 142455502 142455801 -85068777 + AluSx SINE Alu 1 299 -13 5813 161 57 28 chr3 142455801 142455814 -85068764 + L1MC2 LINE L1 5272 5283 -1061 192 40 0 0 chr3 142455814 142455839 -85068739 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 5813 161 57 28 chr3 142455839 142456830 -85067748 + L1MC2 LINE L1 5283 6344 0 231 289 133 15 chr3 142456853 142456988 -85067590 - L1ME4a LINE L1 -65 6056 5906 959 99 15 0 chr3 142457923 142458054 -85066524 - AluSq/x SINE Alu -180 133 1 6498 21 2 0 chr3 142458086 142459015 -85065563 + L1PA4 LINE L1 5069 5999 -156 1573 199 29 0 chr3 142459116 142459458 -85065120 + L1M4 LINE L1 3440 3791 -2355 25 0 0 0 chr3 142459845 142459870 -85064708 + AT_rich Low_complexity Low_complexity 1 25 0 640 296 75 69 chr3 142461432 142461698 -85062880 + L2 LINE L2 2908 3178 -94 2448 134 56 19 chr3 142461698 142462108 -85062470 + MSTB LTR MaLR 1 425 -1 640 296 75 69 chr3 142462108 142462203 -85062375 + L2 LINE L2 3178 3271 -1 2023 144 72 3 chr3 142462681 142463056 -85061522 + MLT2C2 LTR ERVL 1 395 -2 289 265 71 0 chr3 142463065 142463163 -85061415 + L2 LINE L2 2957 3061 -211 191 229 133 48 chr3 142463290 142463373 -85061205 + L2 LINE L2 3168 3257 -15 201 195 0 0 chr3 142464359 142464400 -85060178 + (CA)n Simple_repeat Simple_repeat 2 42 0 528 152 97 121 chr3 142464465 142464630 -85059948 + MLT1J2 LTR MaLR 1 161 -289 411 273 87 16 chr3 142464677 142464860 -85059718 + LTR33A LTR ERVL 328 523 0 2064 119 0 3 chr3 142466781 142467076 -85057502 + AluSx SINE Alu 1 294 -18 3197 205 46 57 chr3 142469786 142470341 -85054237 + L1MC4a LINE L1 6102 6645 -1163 1766 172 3 0 chr3 142470341 142470637 -85053941 + AluJo SINE Alu 1 297 -15 3197 205 46 57 chr3 142470637 142470989 -85053589 + L1MC4a LINE L1 6645 6999 -809 1948 147 0 0 chr3 142470993 142471286 -85053292 - AluJb SINE Alu -19 293 1 3264 192 15 118 chr3 142471430 142472046 -85052532 + L1MC4 LINE L1 7089 7767 -275 2085 108 3 0 chr3 142472046 142472341 -85052237 + AluSq SINE Alu 1 296 -17 3264 192 15 118 chr3 142472341 142472475 -85052103 + L1MC4 LINE L1 7767 7702 -340 2343 67 0 3 chr3 142472475 142472772 -85051806 - AluY SINE Alu -15 296 1 3264 192 15 118 chr3 142472772 142473081 -85051497 + L1MC4 LINE L1 7701 8040 -2 390 141 0 0 chr3 142473087 142473151 -85051427 + L1MB3 LINE L1 6079 6142 -41 1789 151 7 20 chr3 142473155 142473460 -85051118 + AluJo SINE Alu 1 301 -11 422 247 78 68 chr3 142473483 142473857 -85050721 + HAL1b LINE L1 732 2502 -5 1756 156 10 3 chr3 142473862 142474169 -85050409 + AluJb SINE Alu 1 309 -3 1804 151 3 20 chr3 142474812 142475117 -85049461 + AluJo SINE Alu 1 300 -12 1067 171 133 0 chr3 142475188 142475398 -85049180 + AluJb SINE Alu 1 238 -74 186 43 0 0 chr3 142475398 142475421 -85049157 + (A)n Simple_repeat Simple_repeat 1 23 0 2019 117 3 10 chr3 142475597 142475905 -85048673 - AluSx SINE Alu -6 306 1 180 0 0 0 chr3 142476325 142476345 -85048233 + (T)n Simple_repeat Simple_repeat 1 20 0 6662 139 10 13 chr3 142476387 142476500 -85048078 + L1MA4 LINE L1 4427 4539 -1761 2371 85 0 0 chr3 142476500 142476807 -85047771 + AluSq SINE Alu 1 307 -6 6662 139 10 13 chr3 142476807 142478572 -85046006 + L1MA4 LINE L1 4539 6294 -6 1615 240 63 9 chr3 142478574 142479015 -85045563 + MER74B LTR ERVL 102 566 -56 636 221 31 12 chr3 142479392 142479555 -85045023 + MER69A DNA AcHobo 1 166 -11 219 132 26 0 chr3 142479617 142479655 -85044923 + MIR SINE MIR 113 151 -57 222 295 76 6 chr3 142479983 142480181 -85044397 + MIR3 SINE MIR 32 203 -5 2597 129 37 2 chr3 142480314 142480724 -85043854 - MSTA LTR MaLR 0 428 5 201 266 46 83 chr3 142481148 142481257 -85043321 + L2 LINE L2 3204 3308 -5 392 297 40 59 chr3 142481584 142481806 -85042772 - MIR SINE MIR -14 248 31 590 280 69 11 chr3 142482171 142482360 -85042218 - MIR SINE MIR -19 243 44 405 0 0 0 chr3 142482442 142482487 -85042091 + (CA)n Simple_repeat Simple_repeat 2 46 0 306 0 0 0 chr3 142482486 142482520 -85042058 + (GA)n Simple_repeat Simple_repeat 2 35 0 * 349 261 138 8 chr3 142482994 142483124 -85041454 + MIR SINE MIR 115 261 -1 441 326 86 44 chr3 142483240 142483606 -85040972 - L2 LINE L2 -1 3271 2654 202 182 0 0 chr3 142485787 142485820 -85038758 + G-rich Low_complexity Low_complexity 2 34 0 26 30 0 0 chr3 142486419 142486452 -85038126 + GC_rich Low_complexity Low_complexity 1 33 0 1703 164 42 6 chr3 142487369 142487704 -85036874 - L1MB4 LINE L1 -16 6164 5818 1703 187 25 13 chr3 142487836 142488007 -85036571 + MER2 DNA MER2_type 1 180 -165 1457 165 0 98 chr3 142488007 142488358 -85036220 + AluJb SINE Alu 1 320 0 1703 187 25 13 chr3 142488358 142488501 -85036077 + MER2 DNA MER2_type 180 320 -25 207 0 0 0 chr3 142488960 142488983 -85035595 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 1890 128 38 0 chr3 142489008 142489297 -85035281 + AluSx SINE Alu 1 300 -12 407 211 87 82 chr3 142489356 142489512 -85035066 + L1ME4a LINE L1 5673 5827 -294 1815 115 0 135 chr3 142489512 142489611 -85034967 + AluSx SINE Alu 1 112 -190 2271 92 3 0 chr3 142489611 142489916 -85034662 - AluSg SINE Alu -4 306 1 1815 115 0 135 chr3 142489916 142489961 -85034617 + AluSx SINE Alu 112 161 -141 1899 105 4 0 chr3 142489961 142490227 -85034351 - AluSx SINE Alu -2 310 44 1815 115 0 135 chr3 142490227 142490428 -85034150 + AluSx SINE Alu 161 300 -2 407 211 87 82 chr3 142490428 142490542 -85034036 + L1ME4a LINE L1 5827 5939 -182 423 0 0 0 chr3 142490542 142490589 -85033989 + (CA)n Simple_repeat Simple_repeat 2 48 0 407 211 87 82 chr3 142490589 142490615 -85033963 + L1ME4a LINE L1 5939 5963 -158 2376 86 0 6 chr3 142490615 142490930 -85033648 + AluSp SINE Alu 1 313 0 407 211 87 82 chr3 142490930 142490984 -85033594 + L1ME4a LINE L1 5963 6027 -94 570 139 167 0 chr3 142491022 142491130 -85033448 - FLAM_C SINE Alu -4 139 14 21 0 0 0 chr3 142491150 142491171 -85033407 + AT_rich Low_complexity Low_complexity 1 21 0 1500 239 156 45 chr3 142491267 142491761 -85032817 + MLT1G1 LTR MaLR 47 595 0 1739 111 4 0 chr3 142491891 142492134 -85032444 - AluSp SINE Alu -20 293 50 333 125 0 0 chr3 142492227 142492275 -85032303 + AluJo SINE Alu 1 48 -254 731 164 21 106 chr3 142492546 142492735 -85031843 - MER5B DNA MER1_type -2 176 4 187 280 60 0 chr3 142493024 142493074 -85031504 - MIR SINE MIR -136 72 20 290 335 39 65 chr3 142493693 142493848 -85030730 + MIR SINE MIR 35 185 -77 249 343 116 33 chr3 142494547 142494728 -85029850 - L2 LINE L2 -626 2688 2493 263 294 0 12 chr3 142495544 142495629 -85028949 + GA-rich Low_complexity Low_complexity 4 87 0 1033 163 35 25 chr3 142495880 142496083 -85028495 - AluJb SINE Alu -23 289 85 653 263 18 18 chr3 142496358 142496550 -85028028 - MLT1G1 LTR MaLR -390 205 47 1547 166 30 15 chr3 142496724 142496825 -85027753 + AluJo SINE Alu 1 99 -213 183 42 0 0 chr3 142496825 142496849 -85027729 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1547 166 30 15 chr3 142496849 142497018 -85027560 + AluJo SINE Alu 99 275 -37 378 322 37 26 chr3 142497054 142497241 -85027337 - MIR SINE MIR -30 232 41 1338 188 0 4 chr3 142497409 142497649 -85026929 + AluJo SINE Alu 44 282 -30 21 36 0 0 chr3 142504323 142504351 -85020227 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr3 142507830 142507874 -85016704 + AT_rich Low_complexity Low_complexity 1 44 0 378 151 0 0 chr3 142508657 142508710 -85015868 - tRNA-Arg-CGC tRNA tRNA -23 53 1 3797 37 4 0 chr3 142509348 142509805 -85014773 + L1PA5 LINE L1 5696 6154 0 671 157 37 30 chr3 142509924 142510058 -85014520 - AluJo SINE Alu -177 135 1 259 225 28 28 chr3 142510580 142510651 -85013927 - MIR3 SINE MIR -48 160 90 1757 179 3 3 chr3 142510994 142511284 -85013294 + AluJb SINE Alu 1 290 -22 2168 193 80 39 chr3 142511409 142512040 -85012538 + L1MB7 LINE L1 4518 5204 -942 2222 119 0 0 chr3 142512040 142512334 -85012244 + AluSx SINE Alu 1 294 -18 2342 185 37 4 chr3 142512381 142512913 -85011665 + L1MB4 LINE L1 5565 6150 -24 2349 165 65 38 chr3 142512918 142513546 -85011032 + L1MB7 LINE L1 5188 5830 -348 1271 169 16 16 chr3 142513557 142513811 -85010767 + L1MB7 LINE L1 5930 6183 -1 682 171 0 0 chr3 142513906 142514017 -85010561 + AluSq/x SINE Alu 1 111 -201 1643 183 6 13 chr3 142514178 142514489 -85010089 + AluJb SINE Alu 3 311 -1 731 169 48 0 chr3 142515001 142515125 -85009453 - FLAM_A SINE Alu 0 142 13 830 284 124 54 chr3 142515151 142516033 -85008545 - L1MC4a LINE L1 -774 5372 4975 1986 113 9 41 chr3 142516033 142516351 -85008227 + AluSx SINE Alu 1 308 -4 830 284 124 54 chr3 142516351 142516724 -85007854 - L1MC4a LINE L1 -1171 4975 4630 1706 160 13 37 chr3 142517220 142517520 -85007058 - AluJo SINE Alu -19 293 1 737 320 155 44 chr3 142518074 142518189 -85006389 + L2 LINE L2 1819 1920 -1394 2210 116 0 0 chr3 142518189 142518492 -85006086 - AluSq SINE Alu -10 303 1 737 320 155 44 chr3 142518492 142518864 -85005714 + L2 LINE L2 1920 2249 -1065 1943 160 41 6 chr3 142518864 142519226 -85005352 + THE1C LTR MaLR 1 375 0 737 320 155 44 chr3 142519226 142519738 -85004840 + L2 LINE L2 2249 2930 -384 604 293 55 32 chr3 142520073 142520326 -85004252 + MIR SINE MIR 2 260 -2 2085 112 3 10 chr3 142521139 142521433 -85003145 - AluSx SINE Alu -20 292 1 281 182 0 0 chr3 142521953 142522008 -85002570 - L1ME3A LINE L1 -195 5975 5921 5460 163 42 19 chr3 142522684 142524002 -85000576 + L1MA9 LINE L1 4954 6307 -5 305 156 94 42 chr3 142524611 142524707 -84999871 - L1MC5 LINE L1 -54 7907 7807 686 277 13 22 chr3 142524752 142524983 -84999595 - L1ME3A LINE L1 -5 6165 5937 1834 259 136 26 chr3 142525066 142525868 -84998710 - L1ME2 LINE L1 -11 6571 5682 1117 286 129 44 chr3 142525872 142526194 -84998384 - L1ME2 LINE L1 -938 5626 5333 2124 98 39 0 chr3 142526194 142526480 -84998098 + AluSc SINE Alu 2 298 -11 1117 286 129 44 chr3 142526480 142527954 -84996624 - L1ME2 LINE L1 -1231 5333 3687 952 275 121 39 chr3 142527964 142528932 -84995646 - L1ME2 LINE L1 -3394 3170 2074 2454 93 0 0 chr3 142528932 142529242 -84995336 - AluSx SINE Alu -2 310 1 952 275 121 39 chr3 142529242 142529721 -84994857 - L1ME2 LINE L1 -4490 2074 1636 2004 99 38 17 chr3 142529788 142530081 -84994497 + AluY SINE Alu 1 299 -12 2105 116 3 0 chr3 142530090 142530398 -84994180 + AluSx SINE Alu 1 309 0 445 156 200 0 chr3 142530398 142530488 -84994090 + MER105 DNA DNA 31 138 -66 227 299 30 18 chr3 142530507 142530674 -84993904 - L1ME2 LINE L1 -5056 1498 1330 339 376 38 10 chr3 142530677 142530957 -84993621 - L1ME2 LINE L1 -4877 1331 946 2274 70 6 29 chr3 142530965 142531277 -84993301 + AluSx SINE Alu 1 305 -7 24 0 0 0 chr3 142531413 142531437 -84993141 + AT_rich Low_complexity Low_complexity 1 24 0 2469 56 7 10 chr3 142531836 142532141 -84992437 + AluY SINE Alu 1 304 -7 602 203 0 25 chr3 142532143 142532261 -84992317 - FLAM_A SINE Alu -18 115 1 22 70 0 0 chr3 142532505 142532548 -84992030 + AT_rich Low_complexity Low_complexity 1 43 0 981 227 140 29 chr3 142532773 142533160 -84991418 + L1ME1 LINE L1 5175 5607 -737 1254 111 0 60 chr3 142533160 142533376 -84991202 - Tigger1 DNA MER2_type 0 2418 2216 464 173 0 0 chr3 142533377 142533452 -84991126 + AluS SINE Alu 3 77 -235 3787 143 28 7 chr3 142533453 142534063 -84990515 - Tigger1 DNA MER2_type -1795 623 1 1491 211 48 2 chr3 142534069 142534459 -84990119 + L1ME1 LINE L1 5609 6157 -9 307 209 267 0 chr3 142534665 142534770 -84989808 - L2 LINE L2 -1880 1434 1302 732 195 95 18 chr3 142534776 142534945 -84989633 - MER58A DNA MER1_type -8 216 35 953 336 147 9 chr3 142534969 142535498 -84989080 - L2 LINE L2 -2003 1311 710 5486 190 75 18 chr3 142535507 142536766 -84987812 - Cheshire DNA MER1_type 0 2420 1089 264 182 0 0 chr3 142536787 142536842 -84987736 - L1MB8 LINE L1 -16 6162 6108 442 232 131 0 chr3 142536842 142536941 -84987637 - Cheshire DNA MER1_type -1329 1091 980 2216 117 0 0 chr3 142536963 142537261 -84987317 + AluSx SINE Alu 1 298 -14 337 280 0 0 chr3 142537261 142537336 -84987242 + MER21B LTR ERV1 16 90 -773 456 158 26 0 chr3 142537358 142537434 -84987144 + MER21B LTR ERV1 19 96 -767 2803 213 87 36 chr3 142537436 142538163 -84986415 + MER21B LTR ERV1 40 803 -60 654 99 0 0 chr3 142538184 142538275 -84986303 - Cheshire DNA MER1_type -1437 983 893 11035 198 31 65 chr3 142539580 142542392 -84982186 + L1 LINE L1 2299 5123 -1023 747 203 0 0 chr3 142542392 142542520 -84982058 + AluJo SINE Alu 1 128 -184 11035 198 31 65 chr3 142542520 142542780 -84981798 + L1 LINE L1 5123 5390 -756 1627 180 0 43 chr3 142542780 142543085 -84981493 + AluJb SINE Alu 1 292 -20 4176 158 8 7 chr3 142543087 142543825 -84980753 + L1PA16 LINE L1 5428 6166 0 836 147 0 0 chr3 142543920 142544049 -84980529 + AluJo SINE Alu 2 130 -172 1016 158 0 6 chr3 142544420 142544584 -84979994 + AluJo SINE Alu 134 296 -16 23 105 0 0 chr3 142544669 142544755 -84979823 + AT_rich Low_complexity Low_complexity 1 86 0 537 295 179 0 chr3 142545225 142545432 -84979146 + MIR SINE MIR 6 249 -13 22 80 0 0 chr3 142546288 142546338 -84978240 + AT_rich Low_complexity Low_complexity 1 50 0 1997 93 54 0 chr3 142547194 142547473 -84977105 - AluSg SINE Alu -16 294 1 652 304 67 29 chr3 142549138 142549378 -84975200 + MIR SINE MIR 4 252 -10 233 262 122 19 chr3 142549439 142549546 -84975032 - MER112 DNA MER1_type -63 197 80 303 263 188 30 chr3 142549702 142549835 -84974743 + L2 LINE L2 3160 3313 0 2328 63 3 3 chr3 142550103 142550428 -84974150 - AluSp SINE Alu 0 325 1 23 54 0 0 chr3 142552981 142553018 -84971560 + AT_rich Low_complexity Low_complexity 1 37 0 519 264 29 45 chr3 142553290 142553532 -84971046 + L1MC4a LINE L1 5722 5959 -1849 1830 149 10 3 chr3 142554094 142554389 -84970189 + AluJb SINE Alu 1 297 -15 208 397 0 0 chr3 142555635 142555698 -84968880 + L2 LINE L2 3229 3291 -22 291 242 30 15 chr3 142557667 142557733 -84966845 + L2 LINE L2 3205 3271 -1 22 0 0 0 chr3 142559242 142559264 -84965314 + AT_rich Low_complexity Low_complexity 1 22 0 759 162 0 0 chr3 142559271 142559388 -84965190 - AluJb SINE Alu -195 117 1 319 229 93 34 chr3 142560107 142560225 -84964353 + L1ME4a LINE L1 5499 5623 -498 377 251 163 69 chr3 142560229 142560579 -84963999 + L1ME4a LINE L1 5671 6053 -68 430 260 192 28 chr3 142560619 142560796 -84963782 + MER63A DNA MER1_type 2 207 -3 1630 158 4 0 chr3 142561051 142561310 -84963268 + AluJo SINE Alu 1 260 -52 524 212 80 0 chr3 142561332 142561445 -84963133 - L2 LINE L2 0 3313 3192 185 0 0 39 chr3 142563726 142563752 -84960826 + (CCA)n Simple_repeat Simple_repeat 3 27 0 184 353 0 0 chr3 142564341 142564392 -84960186 - L2 LINE L2 -15 3257 3207 1747 218 62 25 chr3 142566447 142566928 -84957650 + Charlie1b DNA MER1_type 24 522 -1 4240 223 66 13 chr3 142567051 142568200 -84956378 + L1MC4a LINE L1 6599 7808 0 197 356 44 33 chr3 142568291 142568381 -84956197 - L2 LINE L2 -13 3300 3210 340 343 90 0 chr3 142568394 142568560 -84956018 - MIR SINE MIR -72 190 10 230 330 146 10 chr3 142568580 142568683 -84955895 - MIR SINE MIR -62 146 30 2130 114 3 0 chr3 142568868 142569167 -84955411 + AluSg SINE Alu 1 300 -10 214 341 99 28 chr3 142569258 142569469 -84955109 + MIR SINE MIR 3 228 -34 237 263 175 9 chr3 142569509 142569623 -84954955 + MIR SINE MIR 128 260 -2 2124 123 3 7 chr3 142569816 142570117 -84954461 - AluSx SINE Alu -12 300 1 361 250 96 88 chr3 142570257 142570774 -84953804 + L1ME4a LINE L1 5518 6076 -45 26 30 0 0 chr3 142570817 142570850 -84953728 + AT_rich Low_complexity Low_complexity 1 33 0 1147 252 128 18 chr3 142570965 142571678 -84952900 + L1ME3A LINE L1 4967 5771 -399 838 215 142 58 chr3 142571697 142572008 -84952570 + L1ME3A LINE L1 5827 6163 -7 249 33 0 0 chr3 142572038 142572068 -84952510 + (CA)n Simple_repeat Simple_repeat 1 30 0 245 257 114 34 chr3 142572110 142572285 -84952293 + L1ME1 LINE L1 5739 5927 -239 2504 65 0 10 chr3 142572313 142572621 -84951957 - AluY SINE Alu -6 305 1 727 220 0 0 chr3 142573079 142573211 -84951367 + AluJo SINE Alu 3 134 -178 2040 138 0 0 chr3 142573661 142573966 -84950612 - AluSx SINE Alu -7 305 1 734 178 32 6 chr3 142574708 142574870 -84949708 + MER3 DNA MER1_type 2 123 -86 476 141 212 20 chr3 142574924 142575023 -84949555 + FLAM_C SINE Alu 1 118 -15 22 0 0 0 chr3 142575023 142575045 -84949533 + AT_rich Low_complexity Low_complexity 1 22 0 2152 116 0 3 chr3 142575476 142575779 -84948799 + AluSx SINE Alu 1 302 -10 1699 192 0 3 chr3 142575789 142576102 -84948476 + AluJo SINE Alu 1 312 0 309 221 153 23 chr3 142576339 142576470 -84948108 + L1ME4a LINE L1 5772 5919 -202 2072 199 41 19 chr3 142576554 142577017 -84947561 + L1MD2 LINE L1 5640 6112 -247 3370 142 0 15 chr3 142577020 142577555 -84947023 + MER1A DNA MER1_type 1 527 0 480 275 14 7 chr3 142577586 142577728 -84946850 + L1MD2 LINE L1 6201 6343 -16 1845 209 69 30 chr3 142578240 142578794 -84945784 + L1MC4 LINE L1 6440 7076 -817 665 267 137 25 chr3 142578805 142579120 -84945458 + L1MC4 LINE L1 7321 7670 -372 1905 242 126 25 chr3 142579144 142579224 -84945354 + L1ME2 LINE L1 2542 2612 -3534 1450 186 55 7 chr3 142579224 142579514 -84945064 + AluJo SINE Alu 1 304 -8 1905 242 126 25 chr3 142579514 142580312 -84944266 + L1ME2 LINE L1 2612 3509 -2637 1284 184 19 56 chr3 142580312 142580578 -84944000 + AluJb SINE Alu 44 299 -13 3760 216 69 50 chr3 142580580 142581002 -84943576 + L1ME2 LINE L1 3502 3914 -2232 2083 46 4 8 chr3 142581002 142581261 -84943317 - AluY SINE Alu -16 295 38 3760 216 69 50 chr3 142581261 142581348 -84943230 + L1ME2 LINE L1 3914 3998 -2148 1600 179 7 33 chr3 142581348 142581649 -84942929 - AluJb SINE Alu -19 293 1 3760 216 69 50 chr3 142581649 142582452 -84942126 + L1ME2 LINE L1 3998 4840 -1306 1326 261 88 13 chr3 142582460 142582938 -84941640 + L1ME2 LINE L1 5650 6163 -1 268 368 35 18 chr3 142583305 142583476 -84941102 - L2 LINE L2 -489 2825 2652 1986 210 35 32 chr3 142583512 142583768 -84940810 + L1ME LINE L1 2647 2901 -3245 2099 145 3 0 chr3 142583768 142584071 -84940507 - AluSx SINE Alu -6 306 3 1986 210 35 32 chr3 142584071 142584409 -84940169 + L1ME LINE L1 2901 3243 -2903 703 164 8 0 chr3 142584411 142584545 -84940033 + L1MB2 LINE L1 5990 6124 -47 2352 234 39 2 chr3 142585400 142586023 -84938555 + L1ME LINE L1 3242 3887 -2259 215 355 66 0 chr3 142586104 142586180 -84938398 - L2 LINE L2 -50 3222 3142 22 0 0 0 chr3 142587656 142587678 -84936900 + AT_rich Low_complexity Low_complexity 1 22 0 510 295 78 40 chr3 142587694 142588091 -84936487 + L1ME LINE L1 5298 5709 -412 1868 156 3 13 chr3 142588472 142588779 -84935799 + AluJb SINE Alu 2 305 -7 33 43 0 0 chr3 142589071 142589118 -84935460 + AT_rich Low_complexity Low_complexity 1 47 0 2188 101 0 7 chr3 142589122 142589420 -84935158 + AluSc SINE Alu 1 296 -13 6994 98 27 9 chr3 142589428 142590555 -84934023 - L1MA1 LINE L1 -11 6291 5144 887 242 80 47 chr3 142591006 142591345 -84933233 + L1MC4a LINE L1 5576 5925 -1883 192 152 0 0 chr3 142591376 142591409 -84933169 + (CATATA)n Simple_repeat Simple_repeat 4 36 0 398 277 175 12 chr3 142593355 142593521 -84931057 - MIR SINE MIR -34 228 36 21 0 0 0 chr3 142595126 142595147 -84929431 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 142595504 142595525 -84929053 + AT_rich Low_complexity Low_complexity 1 21 0 1884 106 25 7 chr3 142595723 142596006 -84928572 - AluY SINE Alu -8 303 16 776 279 169 17 chr3 142596052 142596454 -84928124 + MLT1J LTR MaLR 1 463 -48 2473 72 3 0 chr3 142597374 142597679 -84926899 + AluY SINE Alu 1 306 -5 825 21 0 0 chr3 142597791 142597888 -84926690 + L1PA3 LINE L1 6057 6153 -2 322 301 115 44 chr3 142598189 142598372 -84926206 + L3b LINE CR1 1359 1554 -29 1565 248 81 48 chr3 142598691 142599164 -84925414 + L1M4b LINE L1 1297 1753 -5385 2084 121 3 30 chr3 142599164 142599469 -84925109 - AluSx SINE Alu -15 297 1 1565 248 81 48 chr3 142599469 142600270 -84924308 + L1M4b LINE L1 1753 2928 -4210 644 198 0 28 chr3 142600278 142600572 -84924006 + (TA)n Simple_repeat Simple_repeat 1 285 0 1937 232 82 6 chr3 142600597 142601234 -84923344 + L1M4b LINE L1 2921 3605 -3352 727 163 8 8 chr3 142601234 142601363 -84923215 + FLAM_C SINE Alu 1 129 -14 654 175 114 0 chr3 142601367 142601578 -84923000 + L1M4b LINE L1 3595 3829 -3128 26 50 0 0 chr3 142601754 142601794 -84922784 + AT_rich Low_complexity Low_complexity 1 40 0 487 152 9 25 chr3 142602097 142602219 -84922359 + L1MA4 LINE L1 6156 6277 -35 245 279 117 39 chr3 142602512 142602691 -84921887 + L1M3 LINE L1 5461 5653 -468 219 114 0 0 chr3 142602694 142602729 -84921849 + (TA)n Simple_repeat Simple_repeat 1 35 0 432 172 0 22 chr3 142602903 142603037 -84921541 + (TA)n Simple_repeat Simple_repeat 2 132 0 2181 108 14 0 chr3 142603056 142603353 -84921225 - AluSx SINE Alu -11 301 1 478 248 55 27 chr3 142603353 142603537 -84921041 + L1M3 LINE L1 5652 5851 -483 2008 153 0 3 chr3 142603878 142604186 -84920392 + AluJb SINE Alu 1 307 -5 877 146 7 15 chr3 142604241 142604378 -84920200 + AluJo SINE Alu 1 136 -176 24 0 0 0 chr3 142604679 142604703 -84919875 + AT_rich Low_complexity Low_complexity 1 24 0 991 240 91 39 chr3 142606158 142606541 -84918037 + MER57A LTR ERV1 1 403 0 255 179 0 0 chr3 142607470 142607509 -84917069 - Tigger5 DNA MER2_type 0 2323 2285 267 250 0 14 chr3 142607531 142607603 -84916975 - Tigger5 DNA MER2_type -2246 77 7 577 253 57 0 chr3 142608265 142608423 -84916155 - MIR SINE MIR -34 228 62 1043 306 69 18 chr3 142608504 142608955 -84915623 + L2 LINE L2 2818 3291 -22 204 300 100 0 chr3 142608961 142609031 -84915547 - MIR SINE MIR -183 79 3 203 276 81 35 chr3 142609049 142609136 -84915442 - MIR SINE MIR -124 138 48 2116 121 3 3 chr3 142610373 142610670 -84913908 - AluSc SINE Alu -12 297 1 331 268 73 16 chr3 142611389 142611512 -84913066 - MIR SINE MIR -81 181 52 1741 153 27 33 chr3 142611515 142611815 -84912763 + AluJo SINE Alu 1 298 -14 1198 154 0 6 chr3 142612197 142612379 -84912199 + AluSg/x SINE Alu 126 306 -6 657 182 0 16 chr3 142612752 142612873 -84911705 - FLAM_C SINE Alu -14 119 1 965 93 117 0 chr3 142613339 142613501 -84911077 + L1MA2 LINE L1 6124 6304 0 335 24 0 0 chr3 142613552 142613594 -84910984 - 5S rRNA rRNA -79 42 1 1347 220 138 102 chr3 142613657 142614400 -84910178 + L1MDb LINE L1 9 915 -5494 2770 10 0 7 chr3 142614400 142614709 -84909869 + AluYa5 SINE Alu 1 307 -4 1347 220 138 102 chr3 142614709 142614975 -84909603 + L1MDb LINE L1 915 1170 -5239 24 0 0 0 chr3 142615004 142615028 -84909550 + AT_rich Low_complexity Low_complexity 1 24 0 1427 199 8 15 chr3 142615032 142615293 -84909285 + AluJb SINE Alu 1 259 -53 2350 220 95 56 chr3 142615295 142615408 -84909170 + L1MDb LINE L1 1118 1225 -5181 1799 163 3 3 chr3 142615408 142615690 -84908888 + AluJb SINE Alu 1 282 -30 2350 220 95 56 chr3 142615690 142616699 -84907879 + L1MDb LINE L1 1225 2289 -4117 1035 96 8 229 chr3 142617030 142617396 -84907182 + LTR12 LTR ERV1 1 285 -429 239 186 93 35 chr3 142617397 142617483 -84907095 + LTR30 LTR ERV1 553 643 -79 628 106 0 39 chr3 142617485 142617589 -84906989 + LTR12 LTR ERV1 615 714 0 5867 199 92 53 chr3 142618739 142619277 -84905301 + L1MDb LINE L1 2874 3390 -3016 180 0 0 0 chr3 142619277 142619297 -84905281 + (CAA)n Simple_repeat Simple_repeat 2 21 0 5867 199 92 53 chr3 142619297 142620166 -84904412 + L1MDb LINE L1 3390 4224 -2182 1396 155 105 77 chr3 142620166 142620528 -84904050 + THE1C LTR MaLR 1 372 -3 5867 199 92 53 chr3 142620528 142621265 -84903313 + L1MDb LINE L1 4224 5116 -1290 1390 138 158 15 chr3 142621265 142621525 -84903053 - AluJb SINE Alu -4 298 2 5867 199 92 53 chr3 142621525 142621678 -84902900 + L1MDb LINE L1 5116 5262 -1144 1842 132 45 17 chr3 142621680 142621968 -84902610 + AluJb SINE Alu 1 296 -16 1087 167 0 0 chr3 142622029 142622197 -84902381 + AluJb SINE Alu 136 303 -9 4113 181 27 8 chr3 142622231 142623390 -84901188 + L1M1 LINE L1 4421 5608 -695 1020 173 0 0 chr3 142623390 142623546 -84901032 + FRAM SINE Alu 1 156 -20 608 121 10 0 chr3 142623549 142623648 -84900930 + L1P4 LINE L1 5598 5697 -469 * 841 195 27 54 chr3 142623639 142623857 -84900721 + L1MB1 LINE L1 5454 5665 -503 1918 130 0 36 chr3 142623857 142624158 -84900420 - AluSx SINE Alu -14 298 9 841 195 27 54 chr3 142624158 142624200 -84900378 + L1MB1 LINE L1 5665 5707 -461 1676 168 29 32 chr3 142624200 142624515 -84900063 - MER1B DNA MER1_type 0 339 26 1977 140 22 57 chr3 142624524 142624755 -84899823 + L1MB1 LINE L1 5782 5995 -173 1411 161 9 126 chr3 142624755 142625097 -84899481 + AluJb SINE Alu 1 302 0 1977 140 22 57 chr3 142625097 142625266 -84899312 + L1MB1 LINE L1 5995 6168 0 4172 156 49 18 chr3 142625282 142626264 -84898314 + L1MB8 LINE L1 5431 6594 0 1196 240 11 24 chr3 142626301 142626680 -84897898 + L1MD2 LINE L1 4489 4862 -1284 946 196 12 5 chr3 142626681 142626910 -84897668 + L1MD2 LINE L1 5576 5808 -354 798 227 119 54 chr3 142626922 142627310 -84897268 + L1MD2 LINE L1 5929 6341 -18 699 223 0 0 chr3 142627312 142627451 -84897127 - FLAM_C SINE Alu -4 139 1 869 148 0 15 chr3 142627488 142627623 -84896955 + FLAM_C SINE Alu 1 133 0 41 82 0 0 chr3 142627821 142627918 -84896660 + AT_rich Low_complexity Low_complexity 1 97 0 253 50 100 0 chr3 142628070 142628110 -84896468 + LTR54 LTR ERV1 402 445 -65 21 0 0 0 chr3 142628110 142628131 -84896447 + AT_rich Low_complexity Low_complexity 1 21 0 338 275 158 0 chr3 142628713 142628833 -84895745 + MIR3 SINE MIR 64 202 -6 747 158 213 16 chr3 142628994 142629177 -84895401 - MER20 DNA MER1_type 0 219 1 829 124 0 29 chr3 142629301 142629438 -84895140 + FLAM_C SINE Alu 1 133 0 204 289 134 0 chr3 142630005 142630102 -84894476 + MIR SINE MIR 29 138 -70 201 39 0 0 chr3 142630960 142630986 -84893592 + (TCC)n Simple_repeat Simple_repeat 1 26 0 186 103 0 0 chr3 142631003 142631032 -84893546 + (CACG)n Simple_repeat Simple_repeat 3 31 0 2255 103 7 0 chr3 142631611 142631913 -84892665 - AluSp SINE Alu -9 304 1 359 283 49 60 chr3 142631930 142632114 -84892464 - HAL1 LINE L1 -44 2463 2282 234 261 91 23 chr3 142632430 142632518 -84892060 + L3b LINE CR1 1341 1434 -149 2507 63 0 0 chr3 142632520 142632820 -84891758 - AluY SINE Alu -11 300 1 1433 385 0 19 chr3 142632923 142633232 -84891346 - AluSx SINE Alu -9 303 1 570 146 21 0 chr3 142633381 142633477 -84891101 + AluJ SINE Alu 39 136 -176 38 22 0 0 chr3 142633477 142633522 -84891056 + AT_rich Low_complexity Low_complexity 1 45 0 947 165 13 13 chr3 142633531 142633689 -84890889 + AluJ SINE Alu 136 293 -19 2100 125 3 7 chr3 142634196 142634492 -84890086 + AluSx SINE Alu 1 295 -17 1847 189 0 0 chr3 142635189 142635501 -84889077 - AluJb SINE Alu 0 312 1 1861 158 28 0 chr3 142636304 142636595 -84887983 - AluSx SINE Alu -13 299 1 1839 148 32 0 chr3 142636763 142637047 -84887531 + AluSx SINE Alu 1 293 -19 1069 232 116 18 chr3 142637066 142637446 -84887132 + L1ME3 LINE L1 5725 6141 -21 205 311 91 23 chr3 142637751 142637883 -84886695 + L2 LINE L2 3173 3313 0 195 167 71 0 chr3 142638042 142638084 -84886494 - L2 LINE L2 -6 3307 3263 1663 168 4 14 chr3 142638182 142638462 -84886116 + AluJb SINE Alu 1 277 -35 365 238 77 83 chr3 142638783 142638951 -84885627 - MIR SINE MIR -48 214 48 267 243 0 54 chr3 142639091 142639165 -84885413 - MER112 DNA MER1_type -13 247 178 256 301 7 72 chr3 142639202 142639355 -84885223 - MER112 DNA MER1_type -101 159 17 185 361 72 0 chr3 142639367 142639464 -84885114 + L2 LINE L2 2890 2993 -279 243 0 0 0 chr3 142640275 142640302 -84884276 + (TTCA)n Simple_repeat Simple_repeat 1 27 0 2023 131 3 3 chr3 142641309 142641614 -84882964 + AluSx SINE Alu 1 305 -7 2213 130 0 0 chr3 142641626 142641933 -84882645 + AluSx SINE Alu 1 307 -5 207 0 0 0 chr3 142642031 142642054 -84882524 + (A)n Simple_repeat Simple_repeat 1 23 0 184 333 144 11 chr3 142642069 142642159 -84882419 + L2 LINE L2 3152 3253 -19 1946 97 0 26 chr3 142642375 142642642 -84881936 + AluSx SINE Alu 36 295 -17 193 182 0 0 chr3 142643055 142643088 -84881490 - L2 LINE L2 -2 3311 3279 2042 133 0 13 chr3 142643717 142644019 -84880559 + AluJb SINE Alu 1 298 -14 2144 119 7 0 chr3 142644032 142644334 -84880244 + AluSp SINE Alu 1 304 -9 353 342 124 36 chr3 142645812 142646288 -84878290 + L1M2 LINE L1 716 1233 -5616 390 91 0 0 chr3 142646431 142646486 -84878092 + (TCC)n Simple_repeat Simple_repeat 1 55 0 196 271 29 71 chr3 142647318 142647388 -84877190 + L2 LINE L2 3190 3256 -16 24 0 0 0 chr3 142647845 142647869 -84876709 + AT_rich Low_complexity Low_complexity 1 24 0 1449 228 55 43 chr3 142648369 142648494 -84876084 - L1MD2 LINE L1 0 6359 6237 3018 106 18 16 chr3 142648494 142648938 -84875640 - MER65A LTR ERV1 0 445 1 1449 228 55 43 chr3 142648938 142649022 -84875556 - L1MD2 LINE L1 -122 6237 6156 324 0 0 0 chr3 142649022 142649058 -84875520 + (TG)n Simple_repeat Simple_repeat 1 36 0 1449 228 55 43 chr3 142649058 142649334 -84875244 - L1MD2 LINE L1 -203 6156 5867 427 276 130 11 chr3 142649354 142649539 -84875039 - Charlie8 DNA MER1_type -2178 239 33 799 228 23 76 chr3 142650492 142650692 -84873886 + MIR SINE MIR 7 216 -46 186 43 0 0 chr3 142650692 142650715 -84873863 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1694 170 18 4 chr3 142650717 142650994 -84873584 - AluJo SINE Alu -30 282 2 799 228 23 76 chr3 142650994 142651053 -84873525 + MIR SINE MIR 217 255 -7 1902 144 21 3 chr3 142652148 142652433 -84872145 + AluJo SINE Alu 1 290 -22 1000 170 13 0 chr3 142652444 142652623 -84871955 + AluJb SINE Alu 131 311 0 189 306 0 0 chr3 142652674 142652723 -84871855 - L2 LINE L2 -21 3292 3244 208 333 138 81 chr3 142652756 142653104 -84871474 - L2 LINE L2 -1 3271 2904 188 300 62 0 chr3 142653541 142653621 -84870957 - L2 LINE L2 -563 2751 2667 731 180 8 0 chr3 142653690 142653812 -84870766 + FLAM_A SINE Alu 1 123 -10 396 207 12 12 chr3 142653972 142654054 -84870524 - MER112 DNA MER1_type -178 82 1 565 299 27 32 chr3 142654086 142654307 -84870271 - L2 LINE L2 -1 3312 3093 336 225 0 67 chr3 142654348 142654437 -84870141 + L2 LINE L2 3229 3311 -2 187 351 13 26 chr3 142654444 142654595 -84869983 - L2 LINE L2 -698 2616 2468 861 265 166 25 chr3 142654600 142655039 -84869539 + L2 LINE L2 2655 3203 -110 243 61 0 0 chr3 142655039 142655072 -84869506 + (TG)n Simple_repeat Simple_repeat 1 33 0 861 265 166 25 chr3 142655072 142655201 -84869377 + L2 LINE L2 3203 3312 -1 555 285 117 30 chr3 142655190 142655488 -84869090 - L2 LINE L2 -841 2473 2150 * 252 122 0 0 chr3 142655656 142655697 -84868881 + L1MA6 LINE L1 6257 6297 -3 2227 119 0 0 chr3 142655705 142656000 -84868578 + AluSx SINE Alu 1 295 -17 343 127 0 0 chr3 142656008 142656063 -84868515 - MLT1F LTR MaLR -28 514 460 1446 208 88 9 chr3 142656073 142656415 -84868163 - MER21B LTR ERV1 -29 834 466 2818 94 23 37 chr3 142656416 142656534 -84868044 + MER57B LTR ERV1 1 119 -315 2241 129 0 0 chr3 142656534 142656843 -84867735 + AluSx SINE Alu 1 309 -3 2818 94 23 37 chr3 142656843 142657019 -84867559 + MER57B LTR ERV1 119 290 -144 186 43 0 0 chr3 142657019 142657042 -84867536 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2818 94 23 37 chr3 142657042 142657182 -84867396 + MER57B LTR ERV1 290 430 -4 474 187 0 0 chr3 142657182 142657273 -84867305 - AluSg/x SINE Alu -1 309 219 185 0 40 0 chr3 142657290 142657315 -84867263 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 267 184 0 0 chr3 142657324 142657373 -84867205 - MER21B LTR ERV1 -409 454 406 733 173 65 134 chr3 142657470 142657701 -84866877 - MER21B LTR ERV1 -632 231 17 * 927 245 31 91 chr3 142657687 142658205 -84866373 - MLT1F1 LTR MaLR -51 542 1 342 340 30 10 chr3 142658256 142658456 -84866122 - L2 LINE L2 -1394 1920 1717 342 0 0 0 chr3 142658470 142658508 -84866070 + (TTA)n Simple_repeat Simple_repeat 2 39 0 1641 179 16 10 chr3 142658543 142658851 -84865727 + AluJb SINE Alu 1 310 -2 6987 63 2 1 chr3 142658892 142660090 -84864488 + L1PA6 LINE L1 4942 6143 -11 434 152 0 0 chr3 142660119 142660185 -84864393 + U6 snRNA snRNA 1 66 -41 1870 162 7 3 chr3 142660192 142660489 -84864089 + AluJo SINE Alu 1 298 -14 201 300 92 39 chr3 142660620 142660750 -84863828 - L2 LINE L2 -1898 1416 1280 270 250 109 19 chr3 142661184 142661340 -84863238 - MIR SINE MIR -3 259 90 278 204 0 0 chr3 142662189 142662233 -84862345 - AluJ/monomer SINE Alu -264 44 1 2009 144 3 7 chr3 142663347 142663653 -84860925 - AluSx SINE Alu -7 305 1 931 318 88 16 chr3 142663756 142664373 -84860205 + L2 LINE L2 2091 2751 -563 492 363 71 35 chr3 142664423 142664762 -84859816 + L2 LINE L2 2914 3264 -8 1433 162 42 58 chr3 142664765 142665074 -84859504 + AluJb SINE Alu 1 304 -8 2688 188 60 94 chr3 142665908 142666760 -84857818 + L1MC5 LINE L1 6718 7536 -425 1771 158 18 3 chr3 142666760 142667045 -84857533 + AluJb SINE Alu 4 292 -20 2688 188 60 94 chr3 142667045 142667142 -84857436 + L1MC5 LINE L1 7536 7635 -326 279 0 0 0 chr3 142667184 142667215 -84857363 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 908 144 0 20 chr3 142667235 142667381 -84857197 + FLAM_C SINE Alu 1 143 0 465 228 96 46 chr3 142667381 142667662 -84856916 + L1MC5 LINE L1 7646 7940 -21 648 236 89 37 chr3 142667942 142668002 -84856576 + L2 LINE L2 1995 2050 -1264 898 127 0 0 chr3 142668002 142668128 -84856450 - FLAM_C SINE Alu -7 126 1 648 236 89 37 chr3 142668128 142668394 -84856184 + L2 LINE L2 2050 2400 -914 1674 179 0 0 chr3 142668408 142668676 -84855902 - AluJo SINE Alu -43 269 2 1277 187 10 0 chr3 142668710 142668919 -84855659 + AluJb SINE Alu 87 297 -15 1412 188 42 35 chr3 142669001 142669289 -84855289 + AluJo SINE Alu 3 292 -20 613 288 84 56 chr3 142669332 142669675 -84854903 + L2 LINE L2 2676 3096 -217 198 0 0 0 chr3 142669675 142669697 -84854881 + (CA)n Simple_repeat Simple_repeat 2 23 0 613 288 84 56 chr3 142669697 142669922 -84854656 + L2 LINE L2 3096 3313 0 2726 101 0 3 chr3 142669934 142670299 -84854279 + THE1B LTR MaLR 1 364 0 758 218 169 49 chr3 142670427 142670665 -84853913 + MLT1F1 LTR MaLR 223 431 -136 234 0 0 0 chr3 142670665 142670691 -84853887 + (TTG)n Simple_repeat Simple_repeat 2 27 0 2201 89 0 31 chr3 142670694 142670985 -84853593 - AluSp SINE Alu -31 282 1 758 218 169 49 chr3 142670985 142671050 -84853528 + MLT1F1 LTR MaLR 432 567 0 361 333 15 15 chr3 142672752 142672887 -84851691 - L2 LINE L2 0 3313 3179 369 251 44 71 chr3 142673455 142673514 -84851064 + MER5B DNA MER1_type 1 60 -118 2423 100 0 0 chr3 142673514 142673823 -84850755 + AluJb SINE Alu 1 309 -3 369 251 44 71 chr3 142673823 142673946 -84850632 + MER5B DNA MER1_type 60 178 0 553 312 164 18 chr3 142674389 142674780 -84849798 - L3 LINE CR1 -48 1529 1082 2261 112 3 0 chr3 142676006 142676301 -84848277 + AluSx SINE Alu 3 298 -14 1950 148 7 10 chr3 142677158 142677468 -84847110 + AluJo SINE Alu 1 309 -3 354 154 110 55 chr3 142677783 142677874 -84846704 + MER21B LTR ERV1 1 96 -767 2108 146 3 13 chr3 142677909 142678224 -84846354 - AluJb SINE Alu 0 312 1 2043 141 21 0 chr3 142678233 142678524 -84846054 - AluSx SINE Alu -15 297 1 5560 130 8 27 chr3 142678526 142679355 -84845223 + MER57A-int LTR ERV1 5747 6590 -947 1966 128 113 82 chr3 142679355 142679396 -84845182 - MSTA LTR MaLR 0 428 390 2318 81 27 0 chr3 142679396 142679694 -84844884 + AluY SINE Alu 1 306 -5 1966 128 113 82 chr3 142679694 142680067 -84844511 - MSTA LTR MaLR -38 390 1 5560 130 8 27 chr3 142680067 142680086 -84844492 + MER57A-int LTR ERV1 6590 6581 -956 2152 130 0 3 chr3 142680086 142680386 -84844192 - AluSx SINE Alu -3 309 11 5560 130 8 27 chr3 142680386 142680414 -84844164 + MER57A-int LTR ERV1 6580 6607 -930 1841 129 18 14 chr3 142680441 142680727 -84843851 + MER57A-int LTR ERV1 6595 6881 -656 1180 80 12 6 chr3 142680722 142680884 -84843694 + MER57A-int LTR ERV1 6984 7146 -391 * 691 123 31 39 chr3 142680884 142681014 -84843564 + LTR54B LTR ERV1 3 131 -367 1663 140 24 0 chr3 142681016 142681266 -84843312 + MER57A-int LTR ERV1 7280 7535 -2 2617 145 0 12 chr3 142681268 142681676 -84842902 + MER57A LTR ERV1 1 403 0 397 233 101 4 chr3 142681859 142682025 -84842553 + MLT1G1 LTR MaLR 16 206 -343 1372 190 31 103 chr3 142682025 142682335 -84842243 - LTR56 LTR ERV1 0 437 189 2162 138 0 0 chr3 142682335 142682647 -84841931 + AluSx SINE Alu 1 312 0 1372 190 31 103 chr3 142682647 142682824 -84841754 - LTR56 LTR ERV1 -248 189 1 755 190 280 76 chr3 142682854 142683066 -84841512 + MLT1G1 LTR MaLR 248 415 -180 2211 120 0 10 chr3 142683066 142683375 -84841203 - AluSx SINE Alu -6 306 1 755 190 280 76 chr3 142683375 142683451 -84841127 + MLT1G1 LTR MaLR 415 595 0 3633 160 51 48 chr3 142683481 142684193 -84840385 + MER72 LTR ERV1 9 722 0 856 113 8 45 chr3 142684424 142684557 -84840021 + FLAM_C SINE Alu 1 128 -5 322 196 45 98 chr3 142684912 142685024 -84839554 + MIR SINE MIR 86 191 -71 3364 134 16 0 chr3 142685492 142685992 -84838586 + MER41E LTR ERV1 1 508 -4 201 279 8 98 chr3 142686024 142686084 -84838494 - MIR SINE MIR -48 214 169 3022 96 49 2 chr3 142686084 142686511 -84838067 - MER83 LTR ERV1 0 448 2 201 279 8 98 chr3 142686511 142686572 -84838006 - MIR SINE MIR -93 169 104 236 252 68 48 chr3 142686580 142686683 -84837895 + MER5A DNA MER1_type 21 125 -64 237 167 0 21 chr3 142686710 142686758 -84837820 + MER96B DNA MER1_type? 1 47 -370 880 178 39 0 chr3 142686935 142687115 -84837463 - MER5A DNA MER1_type 0 189 3 266 266 109 31 chr3 142688044 142688172 -84836406 + MIR3 SINE MIR 10 147 -61 2301 122 0 3 chr3 142689211 142689522 -84835056 - AluSx SINE Alu -2 310 1 352 294 77 21 chr3 142689535 142689678 -84834900 - MIR SINE MIR -84 178 28 1750 165 28 3 chr3 142689935 142690226 -84834352 + AluJo SINE Alu 2 299 -13 490 264 85 51 chr3 142691093 142691312 -84833266 + MIR SINE MIR 29 260 -2 682 219 102 15 chr3 142691705 142691901 -84832677 + L1MC1 LINE L1 5581 5793 -328 502 226 90 39 chr3 142691968 142692202 -84832376 + L1M4 LINE L1 2375 2620 -3526 431 222 28 9 chr3 142692271 142692379 -84832199 - MER21B LTR ERV1 -326 537 428 295 259 54 34 chr3 142692420 142692452 -84832126 + L1M4 LINE L1 2574 2604 -3542 2255 116 0 10 chr3 142692452 142692763 -84831815 + AluSx SINE Alu 1 308 -4 295 259 54 34 chr3 142692763 142692866 -84831712 + L1M4 LINE L1 2604 2715 -3431 1634 191 10 7 chr3 142692866 142693160 -84831418 + AluJb SINE Alu 3 297 -15 333 0 0 0 chr3 142693189 142693226 -84831352 + (CA)n Simple_repeat Simple_repeat 2 38 0 209 288 81 62 chr3 142693302 142693462 -84831116 - L2 LINE L2 -219 3053 2891 2150 132 0 0 chr3 142693949 142694245 -84830333 - AluSx SINE Alu -16 296 1 2387 84 0 0 chr3 142694499 142694786 -84829792 - AluSg SINE Alu -23 287 1 1192 78 0 7 chr3 142695127 142695281 -84829297 + AluY SINE Alu 136 288 -23 641 186 17 0 chr3 142695420 142695538 -84829040 + FLAM_A SINE Alu 1 120 -13 207 162 0 0 chr3 142695538 142695575 -84829003 + (TA)n Simple_repeat Simple_repeat 2 38 0 27 29 0 0 chr3 142695778 142695812 -84828766 + AT_rich Low_complexity Low_complexity 1 34 0 2181 170 38 57 chr3 142696313 142696827 -84827751 + L1MC1 LINE L1 5831 6333 0 2044 152 3 0 chr3 142696842 142697151 -84827427 + AluSx SINE Alu 1 310 -2 30 59 0 0 chr3 142697182 142697233 -84827345 + AT_rich Low_complexity Low_complexity 1 51 0 2244 102 0 10 chr3 142698491 142698786 -84825792 + AluSx SINE Alu 1 292 -20 2389 50 40 7 chr3 142698900 142699197 -84825381 + AluY SINE Alu 1 307 -4 2463 87 0 3 chr3 142700475 142700785 -84823793 + AluSg SINE Alu 1 309 -1 347 123 0 0 chr3 142701012 142701069 -84823509 - MER94 DNA DNA -1 133 77 309 180 0 0 chr3 142701073 142701123 -84823455 - Alu SINE Alu -8 293 244 482 264 16 55 chr3 142701259 142701441 -84823137 + L2 LINE L2 3111 3285 -28 760 180 0 23 chr3 142701767 142701895 -84822683 - FLAM_A SINE Alu -7 126 2 2328 109 0 3 chr3 142702020 142702332 -84822246 + AluY SINE Alu 1 311 0 2356 72 0 23 chr3 142702397 142702704 -84821874 + AluY SINE Alu 1 300 -11 24 0 0 0 chr3 142702907 142702931 -84821647 + AT_rich Low_complexity Low_complexity 1 24 0 453 287 143 14 chr3 142702942 142703151 -84821427 + MIR SINE MIR 3 238 -24 495 48 0 0 chr3 142703899 142703961 -84820617 + (TA)n Simple_repeat Simple_repeat 1 62 0 1853 127 0 15 chr3 142704714 142704974 -84819604 + AluJo SINE Alu 31 286 -26 21 0 0 0 chr3 142705755 142705776 -84818802 + AT_rich Low_complexity Low_complexity 1 21 0 205 313 104 26 chr3 142705920 142706035 -84818543 - L2 LINE L2 0 3272 3149 21 0 0 0 chr3 142706287 142706308 -84818270 + AT_rich Low_complexity Low_complexity 1 21 0 615 254 96 37 chr3 142706963 142707001 -84817577 - MIR SINE MIR -28 234 200 1510 175 12 0 chr3 142707001 142707253 -84817325 - AluJo SINE Alu -15 297 43 615 254 96 37 chr3 142707253 142707438 -84817140 - MIR SINE MIR -62 200 13 180 0 0 0 chr3 142708439 142708459 -84816119 + (A)n Simple_repeat Simple_repeat 1 20 0 843 242 44 11 chr3 142708471 142708744 -84815834 + AluSq SINE Alu 9 290 -23 734 182 0 23 chr3 142710123 142710255 -84814323 + FLAM_C SINE Alu 1 129 -4 183 42 0 0 chr3 142710849 142710873 -84813705 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 186 179 77 0 chr3 142710876 142710915 -84813663 - L2 LINE L2 -12 3260 3219 565 93 128 0 chr3 142711195 142711281 -84813297 - AluJb SINE Alu -6 306 210 1834 163 0 13 chr3 142711380 142711681 -84812897 + AluJo SINE Alu 1 297 -15 711 264 97 10 chr3 142712002 142712418 -84812160 + MLT1J LTR MaLR 2 495 -16 2249 115 0 10 chr3 142712655 142712968 -84811610 - AluSx SINE Alu -2 310 1 1066 229 57 4 chr3 142713038 142713283 -84811295 + MIR SINE MIR 2 259 -3 28 0 0 0 chr3 142714241 142714269 -84810309 + AT_rich Low_complexity Low_complexity 1 28 0 592 132 44 0 chr3 142714306 142714397 -84810181 - FLAM_C SINE Alu -34 109 15 2276 104 7 0 chr3 142714413 142714721 -84809857 - AluSx SINE Alu -2 310 1 476 158 11 0 chr3 142715022 142715117 -84809461 + MER53 DNA DNA 92 187 -2 1805 192 133 30 chr3 142715796 142716476 -84808102 + L1ME1 LINE L1 5373 6161 -5 2045 141 0 3 chr3 142716482 142716786 -84807792 - AluSx SINE Alu -9 303 1 261 57 0 0 chr3 142716803 142716838 -84807740 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 1739 151 21 7 chr3 142716848 142717133 -84807445 - AluJo SINE Alu -23 289 1 21 0 0 0 chr3 142717138 142717159 -84807419 + AT_rich Low_complexity Low_complexity 1 21 0 497 221 29 0 chr3 142717343 142717447 -84807131 - MIR SINE MIR -127 135 29 1088 121 40 0 chr3 142717505 142717678 -84806900 - MER20 DNA MER1_type 0 219 40 226 308 174 29 chr3 142717968 142718244 -84806334 - MARNA DNA Mariner -75 511 196 707 156 58 17 chr3 142718377 142718550 -84806028 + L1M4 LINE L1 4964 5143 -1003 2189 115 3 6 chr3 142718550 142718863 -84805715 + AluSx SINE Alu 1 312 0 693 186 23 81 chr3 142718947 142719119 -84805459 + MER5A DNA MER1_type 28 189 0 2384 109 6 0 chr3 142719226 142719537 -84805041 + AluSq SINE Alu 1 313 0 1963 131 4 0 chr3 142719565 142719833 -84804745 + AluSq SINE Alu 26 294 -19 23 0 0 0 chr3 142720183 142720206 -84804372 + AT_rich Low_complexity Low_complexity 1 23 0 2197 123 0 0 chr3 142720207 142720517 -84804061 + AluSx SINE Alu 1 310 -2 365 297 113 48 chr3 142720961 142721190 -84803388 - L1ME4a LINE L1 -294 5827 5584 269 301 32 0 chr3 142721760 142721853 -84802725 + MER58B DNA MER1_type 245 340 -1 1976 145 35 0 chr3 142721965 142722289 -84802289 - AluSx SINE Alu 0 312 1 364 246 62 8 chr3 142722355 142722485 -84802093 + MER103 DNA DNA 2 138 -28 413 261 40 45 chr3 142723003 142723179 -84801399 - L1MC5 LINE L1 -48 7913 7739 2049 119 7 11 chr3 142723191 142723508 -84801070 + AluSx SINE Alu 1 316 0 384 329 200 18 chr3 142724569 142725330 -84799248 + L2 LINE L2 1217 2115 -1199 2157 110 34 0 chr3 142725367 142725658 -84798920 - AluSp SINE Alu -12 301 1 645 211 128 0 chr3 142725797 142725953 -84798625 - FRAM SINE Alu -1 175 1 273 322 55 41 chr3 142726685 142726831 -84797747 - MIR3 SINE MIR -9 199 52 2437 87 3 0 chr3 142726913 142727222 -84797356 + AluSp SINE Alu 1 310 -3 27 29 0 0 chr3 142727246 142727280 -84797298 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr3 142728368 142728398 -84796180 + AT_rich Low_complexity Low_complexity 1 30 0 1067 182 0 41 chr3 142728878 142729098 -84795480 - L1PA16 LINE L1 -10 6156 5946 2272 122 3 0 chr3 142729262 142729565 -84795013 - AluSx SINE Alu -8 304 1 897 83 62 0 chr3 142730219 142730363 -84794215 - L1P4 LINE L1 -698 5476 5324 2169 127 0 6 chr3 142730373 142730687 -84793891 - AluSx SINE Alu 0 312 1 2271 113 0 7 chr3 142730688 142730989 -84793589 - AluSg SINE Alu -11 299 1 920 159 19 6 chr3 142730989 142731146 -84793432 - AluSg/x SINE Alu -17 295 137 1693 180 22 17 chr3 142731147 142731552 -84793026 - L1P4 LINE L1 -813 5333 4927 1022 153 103 21 chr3 142731547 142731829 -84792749 + L1M4 LINE L1 4268 4572 -1574 * 2195 137 0 0 chr3 142731848 142732154 -84792424 + AluSx SINE Alu 1 306 -6 577 1159 2848 0 chr3 142732155 142732242 -84792336 + L1M4 LINE L1 4648 4478 -1668 2138 117 0 29 chr3 142732242 142732550 -84792028 + AluSq SINE Alu 1 299 -14 577 1159 2848 0 chr3 142732550 142732610 -84791968 + L1M4 LINE L1 4478 4362 -1784 1688 170 9 64 chr3 142732610 142732746 -84791832 + AluJb SINE Alu 1 143 -169 2044 141 0 7 chr3 142732746 142733037 -84791541 + AluSx SINE Alu 1 289 -23 1688 170 9 64 chr3 142733037 142733230 -84791348 + AluJb SINE Alu 143 312 0 577 1159 2848 0 chr3 142733230 142733361 -84791217 + L1M4 LINE L1 4361 4972 -1174 749 214 34 6 chr3 142733551 142733729 -84790849 + L1MB3 LINE L1 5989 6171 -12 24 0 0 0 chr3 142733729 142733753 -84790825 + AT_rich Low_complexity Low_complexity 1 24 0 719 157 9 0 chr3 142733753 142733868 -84790710 - FLAM_C SINE Alu -27 116 1 830 138 12 6 chr3 142733974 142734140 -84790438 + L1MA7 LINE L1 6126 6307 -5 796 174 138 6 chr3 142734850 142735017 -84789561 + MER66B LTR ERV1 298 486 0 209 132 19 94 chr3 142735608 142735661 -84788917 + CT-rich Low_complexity Low_complexity 4 52 0 317 316 39 22 chr3 142736029 142736177 -84788401 - MER5B DNA MER1_type -21 168 7 1276 241 79 11 chr3 142736638 142737081 -84787497 + L1M4 LINE L1 3804 4276 -1870 1836 169 0 19 chr3 142737085 142737392 -84787186 - AluJo SINE Alu -9 303 3 835 158 0 0 chr3 142737406 142737539 -84787039 - FLAM_C SINE Alu 0 133 1 1477 144 49 8 chr3 142737553 142737817 -84786761 - L1PA15 LINE L1 0 6165 5891 207 0 0 0 chr3 142738062 142738085 -84786493 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1901 96 52 15 chr3 142738087 142738357 -84786221 - AluY SINE Alu -31 280 1 1653 205 0 20 chr3 142738854 142739157 -84785421 + AluJo SINE Alu 1 297 -15 394 149 0 0 chr3 142739346 142739413 -84785165 - L1MB2 LINE L1 -10 6161 6095 874 159 26 69 chr3 142739413 142739551 -84785027 + MER2 DNA MER2_type 1 130 -215 2009 118 51 39 chr3 142739551 142739882 -84784696 - MER1B DNA MER1_type 0 337 3 874 159 26 69 chr3 142739882 142739932 -84784646 + MER2 DNA MER2_type 130 181 -164 1068 103 5 32 chr3 142739932 142740117 -84784461 - L1MB2 LINE L1 -249 5934 5755 207 0 0 0 chr3 142740335 142740358 -84784220 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 839 143 0 0 chr3 142740441 142740560 -84784018 + FLAM_C SINE Alu 2 120 -23 279 0 0 0 chr3 142740561 142740592 -84783986 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 243 347 160 23 chr3 142740726 142740988 -84783590 + L2 LINE L2 2966 3263 -9 2220 103 0 0 chr3 142741172 142741463 -84783115 + AluY SINE Alu 1 291 -20 839 201 35 0 chr3 142741481 142741650 -84782928 - FRAM SINE Alu -4 172 1 1961 126 39 3 chr3 142741693 142741978 -84782600 + AluSx SINE Alu 1 295 -17 2227 114 3 0 chr3 142742163 142742460 -84782118 + AluSx SINE Alu 1 298 -14 34 0 0 0 chr3 142742950 142742984 -84781594 + AT_rich Low_complexity Low_complexity 1 34 0 677 146 0 41 chr3 142742984 142743107 -84781471 - FLAM_C SINE Alu -25 118 1 882 179 0 0 chr3 142743985 142744125 -84780453 - FLAM_C SINE Alu -1 142 3 311 182 15 30 chr3 142744552 142744618 -84779960 + FLAM_A SINE Alu 23 87 -46 2447 80 0 16 chr3 142744726 142745040 -84779538 + AluY SINE Alu 2 310 -1 1761 148 27 34 chr3 142745267 142745565 -84779013 + AluJo SINE Alu 1 296 -16 24 53 0 0 chr3 142746081 142746119 -84778459 + AT_rich Low_complexity Low_complexity 1 38 0 1470 157 0 15 chr3 142747154 142747422 -84777156 + L1PA16 LINE L1 5903 6166 0 29 28 0 0 chr3 142747504 142747540 -84777038 + AT_rich Low_complexity Low_complexity 1 36 0 528 125 0 0 chr3 142747566 142747646 -84776932 - U13 snRNA snRNA -24 80 1 741 88 35 9 chr3 142747695 142747809 -84776769 - FLAM_C SINE Alu -26 117 1 1701 159 21 17 chr3 142747811 142748101 -84776477 - AluJo SINE Alu -21 291 1 1680 163 11 25 chr3 142748349 142748626 -84775952 + AluJb SINE Alu 13 285 -27 270 157 0 0 chr3 142748626 142748677 -84775901 + Alu SINE Alu 251 301 -1 552 165 75 68 chr3 142748696 142748829 -84775749 + AluJo SINE Alu 3 136 -176 1904 149 3 55 chr3 142748921 142749250 -84775328 + AluSq SINE Alu 2 313 0 864 219 111 9 chr3 142750036 142750248 -84774330 + L1M4 LINE L1 3105 3367 -2779 2373 98 0 6 chr3 142750248 142750563 -84774015 + AluSp SINE Alu 1 313 0 864 219 111 9 chr3 142750563 142750693 -84773885 + L1M4 LINE L1 3367 3482 -2664 652 146 8 32 chr3 142750714 142750837 -84773741 + FLAM_A SINE Alu 22 141 -1 348 289 54 24 chr3 142750837 142751006 -84773572 + L1M4 LINE L1 3520 3693 -2453 820 150 120 6 chr3 142751361 142751528 -84773050 + AluJo SINE Alu 118 303 -9 2168 133 0 0 chr3 142751993 142752293 -84772285 - AluSx SINE Alu -12 300 1 4764 161 57 27 chr3 142752345 142752838 -84771740 + L1MB2 LINE L1 19 551 -5833 579 256 0 0 chr3 142752838 142752967 -84771611 + FLAM_A SINE Alu 1 129 -4 4764 161 57 27 chr3 142752967 142753352 -84771226 + L1MB2 LINE L1 551 923 -5461 818 244 0 0 chr3 142753364 142753528 -84771050 - AluJo/FRAM SINE Alu -2 300 137 1072 105 14 0 chr3 142753531 142753674 -84770904 - AluSc SINE Alu -11 298 154 615 172 0 0 chr3 142753674 142753773 -84770805 - AluJ/FLAM SINE Alu -211 101 3 364 154 0 15 chr3 142753775 142753840 -84770738 + L1MB2 LINE L1 911 974 -5410 1807 137 11 0 chr3 142754481 142754751 -84769827 + AluSq SINE Alu 37 309 -4 4363 163 46 45 chr3 142754761 142754864 -84769714 + L1MB2 LINE L1 5427 5528 -879 2287 104 7 7 chr3 142754864 142755171 -84769407 + AluSx SINE Alu 1 307 -5 4363 163 46 45 chr3 142755171 142755628 -84768950 + L1MB2 LINE L1 5528 6005 -402 2326 54 20 10 chr3 142755628 142755922 -84768656 - AluY SINE Alu -14 297 1 4363 163 46 45 chr3 142755922 142756317 -84768261 + L1MB2 LINE L1 6005 6398 -9 2059 108 24 0 chr3 142756317 142756605 -84767973 - AluSp SINE Alu -16 297 3 260 272 5 63 chr3 142757362 142757553 -84767025 + GA-rich Low_complexity Low_complexity 1 180 0 671 182 0 11 chr3 142757571 142757752 -84766826 + A-rich Low_complexity Low_complexity 1 179 0 291 130 0 0 chr3 142757847 142757901 -84766677 + (A)n Simple_repeat Simple_repeat 1 54 0 1900 169 35 17 chr3 142758171 142758519 -84766059 - MLT1A1 LTR MaLR -11 354 1 412 238 84 75 chr3 142758649 142758718 -84765860 - MER112 DNA MER1_type -3 257 190 2201 129 0 0 chr3 142758718 142759020 -84765558 - AluSx SINE Alu -10 302 1 1240 204 95 0 chr3 142759028 142759292 -84765286 - AluJb SINE Alu -23 289 1 412 238 84 75 chr3 142759292 142759427 -84765151 - MER112 DNA MER1_type -76 184 42 1705 141 0 16 chr3 142759430 142759686 -84764892 + AluSx SINE Alu 37 288 -24 21 0 0 0 chr3 142759686 142759707 -84764871 + AT_rich Low_complexity Low_complexity 1 21 0 1936 162 0 10 chr3 142759708 142760017 -84764561 + AluJo SINE Alu 1 306 -6 234 255 0 0 chr3 142760017 142760064 -84764514 - MER112 DNA MER1_type -213 47 1 731 176 38 0 chr3 142760095 142760226 -84764352 + AluJo SINE Alu 2 137 -175 3106 201 59 28 chr3 142760639 142761103 -84763475 - L1M4 LINE L1 -954 5428 4927 2599 53 0 0 chr3 142761103 142761404 -84763174 - AluY SINE Alu -10 301 1 3106 201 59 28 chr3 142761404 142761751 -84762827 - L1M4 LINE L1 -1455 4927 4592 772 123 25 0 chr3 142761754 142761876 -84762702 - AluSp/q SINE Alu -5 308 184 3294 143 70 5 chr3 142761876 142762465 -84762113 - L1M4 LINE L1 -4712 1672 1046 2004 112 53 23 chr3 142762465 142762768 -84761810 - AluSx SINE Alu 0 312 1 757 176 0 0 chr3 142762776 142762901 -84761677 - AluJb SINE Alu -186 126 2 644 232 172 18 chr3 142763728 142764111 -84760467 + L1M4 LINE L1 3495 3936 -2210 1121 181 0 11 chr3 142764435 142764617 -84759961 + AluJo SINE Alu 1 180 -132 189 0 0 0 chr3 142764738 142764759 -84759819 + (TTGG)n Simple_repeat Simple_repeat 1 21 0 1897 146 3 0 chr3 142764759 142765046 -84759532 - AluJo SINE Alu -24 288 1 429 129 12 59 chr3 142765182 142765267 -84759311 + FLAM_A SINE Alu 44 124 -18 432 237 76 0 chr3 142765302 142765420 -84759158 - MIR3 SINE MIR -5 203 77 1774 110 61 0 chr3 142765967 142766212 -84758366 - AluSx SINE Alu -52 260 1 235 299 79 16 chr3 142766297 142766424 -84758154 - L3b LINE CR1 -275 1308 1174 885 143 0 0 chr3 142766920 142767046 -84757532 + FLAM_C SINE Alu 1 126 -17 2171 123 0 16 chr3 142767055 142767371 -84757207 + AluSq SINE Alu 2 312 -1 2343 84 10 7 chr3 142767799 142768107 -84756471 + AluY SINE Alu 1 309 -2 460 184 0 0 chr3 142768637 142768713 -84755865 + AluSg/x SINE Alu 195 270 -39 821 120 8 15 chr3 142768736 142768869 -84755709 - MER57-int LTR ERV1 -1779 5758 5627 729 185 23 0 chr3 142768882 142769012 -84755566 - AluJo SINE Alu -178 134 2 6592 141 16 44 chr3 142769016 142769536 -84755042 - MER57-int LTR ERV1 -1587 4744 4211 1664 139 117 11 chr3 142769536 142769809 -84754769 + AluSg SINE Alu 1 302 -8 6592 141 16 44 chr3 142769809 142770651 -84753927 - MER57-int LTR ERV1 -2120 4211 3668 255 143 0 0 chr3 142772545 142772587 -84751991 - AluS SINE Alu -201 101 60 719 130 145 8 chr3 142772587 142772718 -84751860 - AluJb SINE Alu -162 150 2 2027 156 0 0 chr3 142772874 142773163 -84751415 + AluSx SINE Alu 1 289 -23 194 116 23 0 chr3 142774245 142774288 -84750290 + (TA)n Simple_repeat Simple_repeat 1 44 0 215 338 96 41 chr3 142774713 142775056 -84749522 - L2 LINE L2 -500 2814 2453 1530 106 5 0 chr3 142775372 142775570 -84749008 - AluSp SINE Alu -114 199 1 544 140 57 32 chr3 142775576 142775733 -84748845 - MER57-int LTR ERV1 -3074 2049 1889 503 160 0 80 chr3 142775742 142775842 -84748736 - AluSg/x SINE Alu -84 228 137 2048 149 0 3 chr3 142775844 142776139 -84748439 - AluSx SINE Alu -10 302 9 289 250 75 0 chr3 142776271 142776351 -84748227 - MER57-int LTR ERV1 -2994 3337 3252 354 143 0 16 chr3 142776830 142776893 -84747685 - MER34C LTR ERV1 -369 216 155 2041 113 11 0 chr3 142776925 142777237 -84747341 - AluSx SINE Alu 0 315 1 303 274 14 68 chr3 142777247 142777393 -84747185 - MER57-int LTR ERV1 -3680 2651 2514 516 187 15 37 chr3 142777437 142777571 -84747007 - MER57-int LTR ERV1 -6695 842 712 1485 149 15 19 chr3 142777685 142777946 -84746632 + AluJb SINE Alu 11 270 -42 280 282 126 0 chr3 142777960 142778063 -84746515 - L1ME LINE L1 -409 5712 5597 243 284 81 14 chr3 142778112 142778186 -84746392 + MIR SINE MIR 2 80 -182 307 324 22 27 chr3 142778244 142778429 -84746149 + L1MEc LINE L1 2144 2327 -4069 1419 174 22 58 chr3 142778462 142778773 -84745805 + AluJo SINE Alu 1 300 -12 289 294 16 48 chr3 142778830 142778956 -84745622 + L2 LINE L2 1878 1999 -1315 1925 156 23 0 chr3 142778975 142779277 -84745301 - AluSx SINE Alu -3 309 1 2186 110 7 3 chr3 142779279 142779578 -84745000 - AluSg SINE Alu -8 302 3 1671 197 0 7 chr3 142779578 142779872 -84744706 - AluJb SINE Alu -20 292 1 1209 71 19 19 chr3 142779902 142780056 -84744522 + AluSq SINE Alu 1 154 -159 694 116 107 8 chr3 142780217 142780338 -84744240 - FLAM_C SINE Alu 0 133 1 4070 150 11 16 chr3 142780338 142780984 -84743594 - MER57A-int LTR ERV1 -6894 643 1 2006 159 48 28 chr3 142780984 142781379 -84743199 - MER57A LTR ERV1 0 403 1 1706 171 7 4 chr3 142781423 142781697 -84742881 + AluJo SINE Alu 1 275 -37 1866 166 13 7 chr3 142782209 142782510 -84742068 - AluJo SINE Alu -9 303 1 294 287 33 16 chr3 142783482 142783604 -84740974 + GA-rich Low_complexity Low_complexity 3 126 0 275 321 12 0 chr3 142783798 142783879 -84740699 + GA-rich Low_complexity Low_complexity 2 83 0 1035 179 0 6 chr3 142783990 142784163 -84740415 - AluJb SINE Alu -79 233 62 2261 80 28 0 chr3 142784579 142784867 -84739711 + AluY SINE Alu 1 296 -15 1273 47 13 0 chr3 142785038 142785188 -84739390 - AluY SINE Alu -155 156 5 241 125 0 0 chr3 142785202 142785242 -84739336 + L1ME4a LINE L1 6079 6118 -3 1788 174 17 3 chr3 142785258 142785556 -84739022 + AluJb SINE Alu 1 302 -10 221 136 68 17 chr3 142785674 142785733 -84738845 + (TATG)n Simple_repeat Simple_repeat 3 64 0 2089 102 4 4 chr3 142785849 142786123 -84738455 + AluSp SINE Alu 1 274 -39 238 344 0 0 chr3 142786496 142786586 -84737992 - MIR SINE MIR -18 244 155 2206 153 8 6 chr3 142786586 142786939 -84737639 - MLT1A1 LTR MaLR 0 365 12 336 169 46 0 chr3 142786947 142787012 -84737566 - MIR SINE MIR -100 162 95 1307 142 38 28 chr3 142787012 142787223 -84737355 + AluSg/x SINE Alu 83 295 -15 396 163 12 47 chr3 142787251 142787337 -84737241 + AluJo SINE Alu 52 134 -168 1183 157 11 38 chr3 142787620 142787882 -84736696 - AluJb SINE Alu -41 271 17 204 184 0 0 chr3 142838958 142838996 -84685582 + G-rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr3 142839010 142839033 -84685545 + GC_rich Low_complexity Low_complexity 1 23 0 680 144 20 48 chr3 142839348 142839494 -84685084 + LTR7 LTR ERV1 302 443 -7 191 262 0 0 chr3 142840040 142840082 -84684496 + L2 LINE L2 3265 3306 -7 1731 177 22 19 chr3 142840149 142840460 -84684118 + AluJo SINE Alu 1 312 0 2394 102 3 3 chr3 142840760 142841073 -84683505 + AluSp SINE Alu 1 313 0 351 235 0 12 chr3 142842017 142842098 -84682480 + MER103 DNA DNA 43 122 -44 2120 115 23 30 chr3 142842200 142842505 -84682073 - AluSx SINE Alu -9 303 1 795 181 0 0 chr3 142842505 142842621 -84681957 - AluJo/FLAM SINE Alu -186 116 1 258 211 0 0 chr3 142842655 142842707 -84681871 + LTR30 LTR ERV1 1 52 -670 1206 110 121 20 chr3 142842722 142842952 -84681626 + LTR12 LTR ERV1 55 2021 -417 306 273 10 0 chr3 142842952 142843051 -84681527 + LTR30 LTR ERV1 544 643 -79 701 136 0 0 chr3 142843052 142843155 -84681423 + LTR12 LTR ERV1 481 583 -131 18782 114 6 13 chr3 142843176 142846003 -84678575 + HERV9 LTR ERV1 58 2866 -5533 878 115 31 0 chr3 142845995 142846125 -84678453 + LTR12 LTR ERV1 347 480 -234 * 2150 116 6 31 chr3 142846310 142846629 -84677949 + AluSx SINE Alu 1 311 -1 953 152 0 116 chr3 142847347 142847571 -84677007 + AluSg/x SINE Alu 87 284 -28 345 47 0 0 chr3 142847571 142847614 -84676964 + (CATA)n Simple_repeat Simple_repeat 2 44 0 1921 145 34 20 chr3 142848348 142848645 -84675933 - AluJb SINE Alu -11 301 1 450 230 170 24 chr3 142848749 142848914 -84675664 - MIR SINE MIR -7 255 67 1856 111 111 4 chr3 142848958 142849237 -84675341 + AluSg SINE Alu 1 309 -1 444 241 35 9 chr3 142849242 142849358 -84675220 - L2 LINE L2 -179 3134 3016 227 291 17 86 chr3 142849653 142849770 -84674808 - MIR SINE MIR 0 262 154 1251 196 49 69 chr3 142849775 142850122 -84674456 - MLT1A2 LTR MaLR -16 358 19 482 200 168 0 chr3 142850123 142850248 -84674330 - MIR SINE MIR -113 149 4 1124 171 0 0 chr3 142850618 142850782 -84673796 - AluJb SINE Alu -13 299 136 1699 130 23 20 chr3 142850784 142851083 -84673495 - AluSp SINE Alu -13 300 1 1239 157 23 54 chr3 142851085 142851346 -84673232 - LTR8 LTR ERV1 -438 253 1 545 296 36 5 chr3 142851352 142851548 -84673030 + L2 LINE L2 2490 2691 -623 1777 197 51 16 chr3 142851555 142851923 -84672655 - L1MB7 LINE L1 0 6184 5830 656 202 16 8 chr3 142851923 142852047 -84672531 - FLAM_A SINE Alu -8 125 1 352 217 0 0 chr3 142851988 142852048 -84672530 - FRAM/FAM SINE Alu -107 59 1 * 2361 101 16 0 chr3 142852053 142852359 -84672219 - AluSx SINE Alu -1 311 1 1777 197 51 16 chr3 142852359 142852533 -84672045 - L1MB7 LINE L1 -358 5826 5611 2474 88 0 0 chr3 142852534 142852840 -84671738 - AluY SINE Alu -5 306 1 494 136 0 0 chr3 142852842 142852923 -84671655 - AluSp/q SINE Alu -5 308 228 2587 77 0 6 chr3 142852925 142853252 -84671326 - LTR2B LTR ERV1 -2 488 164 504 227 38 34 chr3 142853410 142854233 -84670345 - ALR/Alpha Satellite centromeric -5 826 1 477 236 36 66 chr3 142854323 142854415 -84670163 - ALR/Alpha Satellite centromeric -5 1006 913 2019 133 14 14 chr3 142854415 142854708 -84669870 - AluSx SINE Alu -19 293 1 477 236 36 66 chr3 142854708 142854852 -84669726 - ALR/Alpha Satellite centromeric -98 913 766 2092 125 10 6 chr3 142854852 142855163 -84669415 - AluSq SINE Alu -1 312 1 477 236 36 66 chr3 142855163 142855361 -84669217 - ALR/Alpha Satellite centromeric -245 766 1 421 245 35 35 chr3 142855392 142855741 -84668837 - ALR/Alpha Satellite centromeric -5 349 1 1540 173 77 4 chr3 142855812 142856084 -84668494 + AluJo SINE Alu 8 299 -13 982 147 212 25 chr3 142856086 142856331 -84668247 - LTR54B LTR ERV1 -194 304 14 1370 171 5 0 chr3 142856331 142856548 -84668030 - AluSc SINE Alu -9 300 83 2472 186 34 0 chr3 142856553 142857121 -84667457 - L1P LINE L1 -783 5363 4797 824 166 7 0 chr3 142857118 142857269 -84667309 - L1 LINE L1 -1447 4699 4548 * 895 164 19 65 chr3 142857237 142857385 -84667193 - L1M4 LINE L1 -538 5636 5483 2141 134 0 13 chr3 142857385 142857699 -84666879 - AluSx SINE Alu -2 310 1 895 164 19 65 chr3 142857699 142857732 -84666846 - L1M4 LINE L1 -691 5483 5464 2953 112 123 2 chr3 142857732 142858188 -84666390 + MER9 LTR ERVK 1 511 0 895 164 19 65 chr3 142858188 142858219 -84666359 - L1M4 LINE L1 -710 5464 5433 1635 148 24 17 chr3 142858227 142858517 -84666061 - AluJo SINE Alu -20 292 1 701 118 18 0 chr3 142858518 142858628 -84665950 + MLT1B LTR MaLR 50 161 -229 659 133 0 0 chr3 142858652 142858742 -84665836 + AluS SINE Alu 2 91 -222 778 190 45 22 chr3 142858897 142859076 -84665502 + AluJb SINE Alu 129 311 -1 2827 193 16 12 chr3 142859079 142859119 -84665459 - L1MB4 LINE L1 -12 6168 6130 1632 176 30 23 chr3 142859119 142859420 -84665158 - AluJo SINE Alu -9 303 1 2827 193 16 12 chr3 142859420 142859620 -84664958 - L1MB4 LINE L1 -50 6130 5932 964 166 156 122 chr3 142859620 142860055 -84664523 + LTR7 LTR ERV1 1 450 0 2827 193 16 12 chr3 142860055 142860387 -84664191 - L1MB4 LINE L1 -248 5932 5593 22 65 0 0 chr3 142860401 142860432 -84664146 + AT_rich Low_complexity Low_complexity 1 31 0 1195 186 89 1 chr3 142860439 142860700 -84663878 - L1PA16 LINE L1 -16 6150 5871 27 0 0 0 chr3 142861060 142861087 -84663491 + GC_rich Low_complexity Low_complexity 1 27 0 793 220 116 53 chr3 142861563 142861995 -84662583 - L1 LINE L1 -2629 3517 3059 853 242 25 5 chr3 142861999 142862197 -84662381 - MER58A DNA MER1_type -1 223 22 417 257 123 36 chr3 142862198 142862474 -84662104 - L1 LINE L1 -3085 3061 2762 22 42 0 0 chr3 142862540 142862564 -84662014 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr3 142862781 142862807 -84661771 + AT_rich Low_complexity Low_complexity 1 26 0 329 343 7 14 chr3 142862966 142863242 -84661336 + G-rich Low_complexity Low_complexity 1 274 0 214 203 8 42 chr3 142863259 142863377 -84661201 + GA-rich Low_complexity Low_complexity 4 117 0 205 309 0 12 chr3 142863387 142863471 -84661107 + G-rich Low_complexity Low_complexity 2 84 0 * 245 206 0 32 chr3 142863410 142863473 -84661105 + GA-rich Low_complexity Low_complexity 1 61 0 181 190 0 35 chr3 142863484 142863542 -84661036 + GA-rich Low_complexity Low_complexity 1 56 0 446 138 0 0 chr3 142863677 142863742 -84660836 - LTR7 LTR ERV1 -385 65 1 2054 81 0 4 chr3 142863840 142864099 -84660479 + AluSq SINE Alu 47 304 -9 703 117 0 29 chr3 142864101 142864204 -84660374 - AluS SINE Alu -212 101 2 2284 121 0 3 chr3 142864652 142864965 -84659613 - AluSx SINE Alu 0 312 1 2139 100 4 4 chr3 142864982 142865262 -84659316 - AluSg SINE Alu -18 292 13 2287 88 47 26 chr3 142865713 142866054 -84658524 + THE1A LTR MaLR 1 348 -7 29 0 0 0 chr3 142866097 142866126 -84658452 + AT_rich Low_complexity Low_complexity 1 29 0 577 84 8 160 chr3 142866133 142866190 -84658388 - HY3 scRNA scRNA 0 101 70 1633 191 24 0 chr3 142866190 142866478 -84658100 + AluJo SINE Alu 1 295 -17 577 84 8 160 chr3 142866478 142866539 -84658039 - HY3 scRNA scRNA -31 70 1 23 0 0 0 chr3 142867337 142867360 -84657218 + AT_rich Low_complexity Low_complexity 1 23 0 2327 98 10 3 chr3 142868859 142869166 -84655412 - AluSg SINE Alu -1 309 1 2476 79 3 0 chr3 142869176 142869479 -84655099 - AluSp SINE Alu -9 304 1 305 122 0 41 chr3 142869563 142869612 -84654966 - FLAM_A SINE Alu -10 123 77 22 35 0 0 chr3 142870099 142870128 -84654450 + AT_rich Low_complexity Low_complexity 1 29 0 807 243 34 25 chr3 142870209 142870448 -84654130 + L1MEc LINE L1 23 263 -6133 410 198 12 0 chr3 142870487 142870573 -84654005 + L1MB8 LINE L1 4864 4950 -1196 1399 189 95 25 chr3 142870577 142871021 -84653557 + L1MB8 LINE L1 5596 6103 -75 262 169 14 28 chr3 142871043 142871114 -84653464 + CT-rich Low_complexity Low_complexity 3 72 0 1675 117 97 0 chr3 142871135 142871382 -84653196 - AluSx SINE Alu -11 301 31 435 258 56 56 chr3 142871592 142871825 -84652753 + L1MEc LINE L1 2499 2731 -3484 848 171 0 0 chr3 142871827 142871950 -84652628 - AluJb SINE Alu -125 187 65 249 132 0 0 chr3 142871950 142871988 -84652590 + L1MEc LINE L1 2749 2786 -3429 2329 106 6 6 chr3 142871988 142872300 -84652278 + AluSx SINE Alu 1 312 0 1946 147 14 0 chr3 142873180 142873473 -84651105 + AluSx SINE Alu 1 297 -15 1437 138 154 8 chr3 142873598 142873858 -84650720 + AluJo SINE Alu 1 298 -4 225 246 15 0 chr3 142873859 142873924 -84650654 - L2 LINE L2 -19 3294 3229 402 273 8 16 chr3 142874387 142874508 -84650070 - L2 LINE L2 -9 3304 3185 413 194 58 19 chr3 142874581 142874684 -84649894 - MER5A DNA MER1_type -43 146 40 3260 106 9 0 chr3 142874760 142875204 -84649374 - MER83 LTR ERV1 0 448 1 1941 143 0 7 chr3 142875227 142875507 -84649071 + AluJo SINE Alu 1 278 -34 436 201 134 43 chr3 142876421 142876585 -84647993 - MIR SINE MIR 0 262 84 1869 151 4 0 chr3 142876703 142876981 -84647597 + AluSx SINE Alu 1 279 -33 271 22 87 0 chr3 142876983 142877029 -84647549 + A-rich Low_complexity Low_complexity 1 50 0 366 23 0 0 chr3 142877088 142877131 -84647447 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1506 212 10 7 chr3 142877393 142877690 -84646888 + AluJo SINE Alu 7 304 -8 1953 146 7 0 chr3 142877715 142878003 -84646575 - AluSx SINE Alu -22 290 1 554 143 10 31 chr3 142878041 142878139 -84646439 + MLT1A2 LTR MaLR 2 97 -277 998 145 0 0 chr3 142878294 142878446 -84646132 + AluSg/x SINE Alu 158 309 -3 240 217 0 0 chr3 142878456 142878502 -84646076 + AluJ/monomer SINE Alu 1 46 -257 1218 121 23 0 chr3 142878502 142878675 -84645903 - AluSx SINE Alu -135 177 1 410 185 0 0 chr3 142879171 142879252 -84645326 - L1PA16 LINE L1 -1 6165 6085 927 144 45 5 chr3 142879252 142879425 -84645153 - L1PA16 LINE L1 -324 5839 5667 278 197 121 0 chr3 142879624 142879690 -84644888 + L1MC/D LINE L1 5684 5757 -2051 1775 156 19 0 chr3 142879915 142880184 -84644394 - AluJb SINE Alu -38 274 1 705 191 57 0 chr3 142880811 142880952 -84643626 + AluJo SINE Alu 2 150 -162 1540 160 25 71 chr3 142880983 142881308 -84643270 + AluJo SINE Alu 1 310 -2 22 0 0 0 chr3 142881544 142881566 -84643012 + AT_rich Low_complexity Low_complexity 1 22 0 1894 151 0 39 chr3 142881566 142881878 -84642700 + AluSx SINE Alu 1 300 -12 1514 146 22 93 chr3 142881964 142882285 -84642293 + MLT2A2 LTR ERVL 1 298 -155 19120 90 20 14 chr3 142882311 142882396 -84642182 + HERVL-B3 LTR ERVL 2748 2831 -2823 2064 117 3 11 chr3 142882396 142882678 -84641900 + AluSq SINE Alu 1 280 -33 19120 90 20 14 chr3 142882678 142882705 -84641873 + HERVL-B3 LTR ERVL 2831 2856 -2798 1146 75 6 12 chr3 142882705 142882878 -84641700 + (GAAA)n Simple_repeat Simple_repeat 4 175 0 19120 90 20 14 chr3 142882878 142885581 -84638997 + HERVL-B3 LTR ERVL 2856 5654 0 2230 197 31 74 chr3 142885581 142886160 -84638418 + MLT2B3 LTR ERVL 1 554 0 1978 148 13 7 chr3 142886542 142886846 -84637732 + AluSx SINE Alu 5 310 -2 2355 98 3 3 chr3 142887041 142887346 -84637232 + AluSx SINE Alu 1 305 -7 1453 111 60 0 chr3 142887361 142887578 -84637000 - MER30 DNA MER1_type 0 230 1 322 323 77 7 chr3 142887579 142887734 -84636844 + MIR SINE MIR 32 197 -65 2124 132 3 0 chr3 142887970 142888266 -84636312 - AluSx SINE Alu -15 297 1 2053 137 3 6 chr3 142888435 142888748 -84635830 + AluSx SINE Alu 1 312 0 1751 138 87 4 chr3 142888785 142889061 -84635517 + AluSx SINE Alu 5 303 -9 790 162 0 42 chr3 142889708 142889850 -84634728 + MER2 DNA MER2_type 1 136 -209 785 172 0 0 chr3 142889855 142889977 -84634601 - FLAM_A SINE Alu -8 125 4 1535 167 4 0 chr3 142890020 142890259 -84634319 - AluJb SINE Alu -58 254 15 2034 132 21 0 chr3 142890282 142890570 -84634008 - AluSx SINE Alu -18 294 1 624 160 137 110 chr3 142890573 142890792 -84633786 + MER2 DNA MER2_type 121 345 0 1674 160 58 0 chr3 142890969 142891262 -84633316 + AluJo SINE Alu 1 310 -2 2045 96 64 3 chr3 142891467 142891749 -84632829 - AluSx SINE Alu -13 299 1 1638 171 0 58 chr3 142891782 142892091 -84632487 + AluJo SINE Alu 1 291 -21 324 0 0 0 chr3 142892095 142892131 -84632447 + (CA)n Simple_repeat Simple_repeat 2 37 0 483 210 0 114 chr3 142892220 142892295 -84632283 + MIR SINE MIR 7 54 -208 2186 118 16 0 chr3 142892295 142892601 -84631977 - AluSx SINE Alu -1 311 1 483 210 0 114 chr3 142892601 142892692 -84631886 + MIR SINE MIR 54 154 -108 222 264 92 0 chr3 142892691 142892778 -84631800 + L2 LINE L2 3169 3263 -9 * 198 0 0 0 chr3 142893524 142893546 -84631032 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2291 123 16 27 chr3 142893551 142893731 -84630847 - L1PB1 LINE L1 -8 6143 5963 1453 148 0 0 chr3 142893731 142893941 -84630637 - AluSg/x SINE Alu -19 291 82 2291 123 16 27 chr3 142893941 142894126 -84630452 - L1PB1 LINE L1 -188 5963 5782 1817 108 8 8 chr3 142894240 142894481 -84630097 + AluSx SINE Alu 58 298 -14 4365 200 46 26 chr3 142894482 142895208 -84629370 - Charlie1a DNA MER1_type -1687 1074 319 2159 123 0 3 chr3 142895208 142895510 -84629068 + AluSx SINE Alu 1 301 -11 4365 200 46 26 chr3 142895510 142895835 -84628743 - Charlie1a DNA MER1_type -2442 319 2 311 264 27 27 chr3 142896199 142896309 -84628269 - L1ME LINE L1 -516 5605 5496 331 265 129 27 chr3 142896606 142896753 -84627825 - MIR3 SINE MIR -10 198 37 407 35 18 0 chr3 142897632 142897689 -84626889 + (TA)n Simple_repeat Simple_repeat 2 59 0 2086 103 7 31 chr3 142897784 142898076 -84626502 - AluSx SINE Alu -25 287 3 1401 111 0 10 chr3 142898490 142898688 -84625890 + AluSg/x SINE Alu 114 309 0 888 208 18 0 chr3 142899294 142899462 -84625116 - MER58A DNA MER1_type -10 214 44 378 296 72 33 chr3 142899525 142899677 -84624901 + L2 LINE L2 3115 3272 0 213 245 33 166 chr3 142899840 142899916 -84624662 - MIR SINE MIR -112 150 102 1718 179 0 17 chr3 142899916 142900212 -84624366 - AluJo SINE Alu -21 291 1 213 245 33 166 chr3 142900212 142900286 -84624292 - MIR SINE MIR -160 102 20 1812 122 32 61 chr3 142900651 142900832 -84623746 - AluSp SINE Alu -5 308 138 2294 104 0 7 chr3 142900832 142901139 -84623439 - AluY SINE Alu -6 305 1 1812 122 32 61 chr3 142901139 142901269 -84623309 - AluSp SINE Alu -175 138 6 2299 117 0 0 chr3 142901454 142901762 -84622816 - AluSx SINE Alu -4 308 1 1507 127 0 0 chr3 142901976 142902181 -84622397 - AluSx SINE Alu -106 206 2 1841 166 23 13 chr3 142902182 142902490 -84622088 - AluJb SINE Alu -1 311 1 2357 132 11 3 chr3 142902490 142902861 -84621717 - L1P4 LINE L1 -428 5738 5365 2217 135 0 0 chr3 142902861 142903173 -84621405 - AluSx SINE Alu 0 312 1 231 114 0 0 chr3 142904428 142904463 -84620115 + (TG)n Simple_repeat Simple_repeat 2 36 0 784 159 56 0 chr3 142904829 142904955 -84619623 + FLAM_C SINE Alu 1 133 0 991 153 38 0 chr3 142904995 142905152 -84619426 - AluSg/x SINE Alu -16 296 134 1682 135 8 0 chr3 142905152 142905396 -84619182 - AluSq SINE Alu -14 299 54 1797 133 54 17 chr3 142905438 142905732 -84618846 + AluSx SINE Alu 1 305 -7 2204 99 3 7 chr3 142906703 142906997 -84617581 - AluSq SINE Alu -20 293 1 21 36 0 0 chr3 142907607 142907635 -84616943 + AT_rich Low_complexity Low_complexity 1 28 0 2234 108 0 7 chr3 142907846 142908142 -84616436 - AluSq SINE Alu -19 294 1 1680 176 3 21 chr3 142908315 142908605 -84615973 - AluJo SINE Alu -27 285 1 260 274 27 27 chr3 142908752 142908825 -84615753 + MIR3 SINE MIR 85 157 -51 360 225 5 13 chr3 142908893 142908980 -84615598 + AluS SINE Alu 2 68 -235 1086 238 3 13 chr3 142909375 142909653 -84614925 + AluJb SINE Alu 5 281 -21 324 0 0 0 chr3 142909653 142909689 -84614889 + (CA)n Simple_repeat Simple_repeat 1 36 0 1086 238 3 13 chr3 142909689 142909708 -84614870 + AluJb SINE Alu 281 299 -3 229 163 47 0 chr3 142910149 142910192 -84614386 - Alu SINE Alu -237 65 21 1756 141 0 15 chr3 142910200 142910464 -84614114 + AluJo SINE Alu 42 302 -5 207 0 0 0 chr3 142910464 142910487 -84614091 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 255 253 176 17 chr3 142910494 142910769 -84613809 + L1ME4a LINE L1 5778 6105 -16 2156 99 3 37 chr3 142910769 142911091 -84613487 + AluSx SINE Alu 2 312 0 255 253 176 17 chr3 142911091 142911111 -84613467 + L1ME4a LINE L1 6105 6120 -1 392 175 58 19 chr3 142911286 142911389 -84613189 + MER50 LTR ERV1 492 598 -136 261 139 0 0 chr3 142911400 142911443 -84613135 + (TA)n Simple_repeat Simple_repeat 2 44 0 1740 184 20 0 chr3 142912117 142912411 -84612167 + AluJb SINE Alu 1 300 -12 364 178 20 40 chr3 142912820 142912921 -84611657 + L1ME LINE L1 5564 5662 -459 1383 262 179 36 chr3 142913097 142914174 -84610404 + HAL1 LINE L1 14 1252 -1255 207 0 0 0 chr3 142914174 142914197 -84610381 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1383 262 179 36 chr3 142914197 142914212 -84610366 + HAL1 LINE L1 1252 1263 -1244 1843 154 92 27 chr3 142914217 142914718 -84609860 + MLT2A2 LTR ERVL 1 554 0 875 225 174 24 chr3 142914718 142914973 -84609605 + HAL1 LINE L1 1277 1492 -1015 2199 113 7 0 chr3 142914973 142915264 -84609314 - AluSx SINE Alu -19 293 1 875 225 174 24 chr3 142915264 142915462 -84609116 + HAL1 LINE L1 1492 1798 -709 23 33 0 0 chr3 142916426 142916456 -84608122 + AT_rich Low_complexity Low_complexity 1 30 0 451 294 29 0 chr3 142916500 142916602 -84607976 + L2 LINE L2 3165 3269 -3 2202 130 13 0 chr3 142916651 142916959 -84607619 - AluSx SINE Alu 0 312 1 1991 147 16 3 chr3 142917069 142917375 -84607203 - AluSx SINE Alu -2 310 1 652 185 161 19 chr3 142918083 142918245 -84606333 - MER5A DNA MER1_type -1 188 4 1119 185 46 9 chr3 142918256 142918472 -84606106 + MER58A DNA MER1_type 1 224 0 1705 116 29 0 chr3 142918678 142918919 -84605659 - AluSx SINE Alu -20 292 45 546 167 33 0 chr3 142918926 142919016 -84605562 - AluSq/x SINE Alu -196 116 24 272 205 0 0 chr3 142919016 142919072 -84605506 - AluS SINE Alu -210 93 44 255 174 0 0 chr3 142919092 142919139 -84605439 + AluS SINE Alu 47 88 -215 1226 123 6 0 chr3 142919690 142919869 -84604709 + AluSp SINE Alu 32 211 -102 1607 125 20 16 chr3 142919869 142920117 -84604461 + AluSq SINE Alu 43 291 -22 28 29 0 0 chr3 142920117 142920152 -84604426 + AT_rich Low_complexity Low_complexity 1 35 0 1219 162 16 0 chr3 142920655 142920846 -84603732 - AluSx SINE Alu -118 194 1 2098 135 17 0 chr3 142920856 142921145 -84603433 - AluSx SINE Alu -18 294 1 252 333 120 18 chr3 142921195 142921420 -84603158 + L2 LINE L2 2334 2581 -733 506 242 159 16 chr3 142921653 142921835 -84602743 - MIR SINE MIR -19 243 36 2354 93 3 0 chr3 142922492 142922792 -84601786 + AluSp SINE Alu 1 301 -12 22 0 0 0 chr3 142922815 142922837 -84601741 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr3 142923281 142923312 -84601266 + AT_rich Low_complexity Low_complexity 1 31 0 2339 98 0 0 chr3 142924505 142924802 -84599776 - AluSx SINE Alu -15 297 1 1095 171 5 5 chr3 142924895 142925082 -84599496 + AluJb SINE Alu 87 273 -39 30 0 0 0 chr3 142925084 142925114 -84599464 + AT_rich Low_complexity Low_complexity 1 30 0 273 212 0 110 chr3 142925416 142925534 -84599044 + L1ME4a LINE L1 5964 6068 -53 2256 97 0 0 chr3 142925865 142926153 -84598425 - AluSq SINE Alu -25 288 1 207 100 0 0 chr3 142926616 142926646 -84597932 + (TA)n Simple_repeat Simple_repeat 2 31 0 1010 137 26 0 chr3 142926646 142926799 -84597779 - FRAM SINE Alu -21 155 1 251 275 137 61 chr3 142926880 142927011 -84597567 - L2 LINE L2 -849 2465 2325 1948 161 0 3 chr3 142927561 142927860 -84596718 + AluJo SINE Alu 1 298 -14 2277 73 0 0 chr3 142928024 142928297 -84596281 + AluY SINE Alu 25 297 -14 1950 139 10 13 chr3 142928798 142929099 -84595479 - AluJb SINE Alu -12 300 1 1059 224 155 11 chr3 142929403 142929905 -84594673 + L1ME3A LINE L1 5561 6170 0 28 0 0 0 chr3 142930064 142930092 -84594486 + AT_rich Low_complexity Low_complexity 1 28 0 1221 135 56 94 chr3 142930096 142930363 -84594215 + AluJo SINE Alu 37 293 -19 2294 104 48 28 chr3 142930372 142930729 -84593849 + THE1B LTR MaLR 1 364 0 11867 86 8 1 chr3 142930729 142932298 -84592280 + THE1B-int LTR MaLR 1 1580 0 2318 93 48 34 chr3 142932298 142932654 -84591924 + THE1B LTR MaLR 1 361 -3 405 131 41 8 chr3 142932654 142932776 -84591802 + (TA)n Simple_repeat Simple_repeat 1 126 0 261 215 0 25 chr3 142932809 142932888 -84591690 + (TA)n Simple_repeat Simple_repeat 2 78 0 2267 101 0 29 chr3 142933431 142933747 -84590831 + AluSp SINE Alu 1 307 -6 4235 194 53 35 chr3 142933883 142935018 -84589560 + Charlie1a DNA MER1_type 1 1155 -300 185 143 0 20 chr3 142935184 142935233 -84589345 + (TA)n Simple_repeat Simple_repeat 1 48 0 830 137 8 8 chr3 142935248 142935379 -84589199 - FLAM_C SINE Alu -2 131 1 1551 177 0 39 chr3 142935383 142935694 -84588884 - AluJo SINE Alu -13 299 1 2183 118 0 7 chr3 142936539 142936843 -84587735 - AluSx SINE Alu -10 302 1 2280 194 35 123 chr3 142937201 142937406 -84587172 + L1ME1 LINE L1 5325 5546 -620 2288 107 0 10 chr3 142937406 142937716 -84586862 + AluSx SINE Alu 2 308 -4 2280 194 35 123 chr3 142937716 142938321 -84586257 + L1ME1 LINE L1 5546 6049 -117 2024 102 0 83 chr3 142938321 142938645 -84585933 + AluSx SINE Alu 1 297 -15 2280 194 35 123 chr3 142938645 142938747 -84585831 + L1ME1 LINE L1 6049 6158 -8 26 0 0 0 chr3 142938913 142938939 -84585639 + AT_rich Low_complexity Low_complexity 1 26 0 2430 84 3 0 chr3 142940092 142940401 -84584177 + AluSq SINE Alu 1 310 -3 1188 110 6 0 chr3 142940956 142941120 -84583458 - AluSg/x SINE Alu -16 294 130 261 0 0 0 chr3 142941225 142941254 -84583324 + (CA)n Simple_repeat Simple_repeat 2 30 0 3390 145 15 0 chr3 142941254 142942099 -84582479 - L1P5 LINE L1 -364 5787 4930 358 200 100 80 chr3 142942113 142942313 -84582265 - LTR7 LTR ERV1 -21 429 226 8103 191 9 39 chr3 142942495 142944601 -84579977 - L1 LINE L1 -1209 4937 2894 470 329 30 12 chr3 142944637 142944801 -84579777 - MIR SINE MIR -15 247 81 490 316 28 117 chr3 142944819 142944846 -84579732 - L2 LINE L2 -2 3270 3242 1639 172 7 32 chr3 142944846 142944976 -84579602 + AluJo SINE Alu 5 137 -175 2294 105 0 19 chr3 142944976 142945289 -84579289 + AluSg SINE Alu 1 307 -3 1639 172 7 32 chr3 142945289 142945466 -84579112 + AluJo SINE Alu 137 304 -8 490 316 28 117 chr3 142945466 142945830 -84578748 - L2 LINE L2 -30 3242 2914 1701 168 25 0 chr3 142945842 142946139 -84578439 + AluJb SINE Alu 5 308 0 1399 191 83 142 chr3 142946662 142947336 -84577242 + LTR8A LTR ERV1 34 667 -60 186 133 0 0 chr3 142947349 142947379 -84577199 + (TTCC)n Simple_repeat Simple_repeat 3 32 0 674 178 0 25 chr3 142947402 142947520 -84577058 - AluJo/FRAM SINE Alu -54 258 144 1273 113 159 0 chr3 142947522 142947717 -84576861 - AluSg SINE Alu -84 226 1 404 209 183 26 chr3 142947761 142947914 -84576664 + MIR SINE MIR 67 243 -19 1858 147 34 20 chr3 142948030 142948323 -84576255 + AluJb SINE Alu 1 297 -15 345 47 0 0 chr3 142949065 142949108 -84575470 + (TATG)n Simple_repeat Simple_repeat 2 44 0 955 152 0 116 chr3 142949108 142949332 -84575246 - AluSg/x SINE Alu -28 282 85 200 301 116 27 chr3 142949399 142949545 -84575033 - MIR SINE MIR -25 237 79 334 195 24 0 chr3 142949631 142949713 -84574865 - MLT1D LTR MaLR 0 505 422 2125 144 0 0 chr3 142949713 142950019 -84574559 + AluSx SINE Alu 1 306 -6 183 100 0 0 chr3 142950192 142950222 -84574356 + (TTA)n Simple_repeat Simple_repeat 1 30 0 2117 114 0 0 chr3 142950222 142950502 -84574076 - AluSx SINE Alu -32 280 1 487 32 0 0 chr3 142950677 142950739 -84573839 + L1PA6 LINE L1 6091 6152 -2 648 218 21 23 chr3 142950767 142951451 -84573127 + ALR/Alpha Satellite centromeric 1 682 -22 591 229 34 17 chr3 142951501 142953588 -84570990 + ALR/Alpha Satellite centromeric 1 2122 -17 693 218 32 25 chr3 142953605 142954948 -84569630 + ALR/Alpha Satellite centromeric 1 1352 -17 617 201 37 39 chr3 142954960 142955743 -84568835 + ALR/Alpha Satellite centromeric 1 781 -60 1413 135 65 8 chr3 142956106 142956351 -84568227 + L1MD3 LINE L1 7729 7987 -8 227 261 0 61 chr3 142956673 142956708 -84567870 + CT-rich Low_complexity Low_complexity 2 38 -71 2074 122 21 0 chr3 142956708 142956994 -84567584 - AluSx SINE Alu -15 297 6 227 261 0 61 chr3 142956994 142957073 -84567505 + CT-rich Low_complexity Low_complexity 38 109 0 2078 131 0 0 chr3 142957154 142957460 -84567118 - AluSx SINE Alu 0 306 1 475 216 138 72 chr3 142957802 142957892 -84566686 + MER5A DNA MER1_type 8 91 -98 1805 126 65 14 chr3 142957892 142958169 -84566409 + AluSx SINE Alu 1 291 -21 475 216 138 72 chr3 142958169 142958245 -84566333 + MER5A DNA MER1_type 91 185 -4 359 317 111 19 chr3 142958256 142958464 -84566114 + L2 LINE L2 1082 1308 -2006 262 127 0 99 chr3 142958464 142958535 -84566043 + MER53 DNA DNA 1 64 -125 * 498 161 11 0 chr3 142958529 142958622 -84565956 - MER53 DNA DNA -95 94 1 980 204 103 8 chr3 142958636 142959061 -84565517 - MLT2F LTR ERVL -152 511 1 2286 88 14 14 chr3 142959144 142959440 -84565138 + AluSg SINE Alu 1 296 -14 360 321 114 0 chr3 142959516 142959700 -84564878 - MIR SINE MIR -57 205 1 430 337 74 5 chr3 142959871 142960061 -84564517 + MIR SINE MIR 47 249 -13 226 255 170 11 chr3 142960390 142960484 -84564094 + L3 LINE CR1 1078 1186 -391 234 0 0 0 chr3 142960498 142960524 -84564054 + (T)n Simple_repeat Simple_repeat 1 26 0 673 164 14 41 chr3 142961072 142961218 -84563360 - FLAM_C SINE Alu 0 143 2 971 187 21 16 chr3 142961247 142961556 -84563022 - MLT1A2 LTR MaLR -4 370 2 1953 146 7 0 chr3 142961594 142961882 -84562696 + AluSx SINE Alu 1 290 -22 1476 218 10 7 chr3 142961907 142962205 -84562373 - AluJo SINE Alu -7 305 7 468 51 0 0 chr3 142962467 142962526 -84562052 + (TTTA)n Simple_repeat Simple_repeat 2 60 0 275 0 0 28 chr3 142962594 142962630 -84561948 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 1901 144 4 0 chr3 142962632 142962910 -84561668 - AluSx SINE Alu -33 279 1 436 201 134 43 chr3 142963028 142963192 -84561386 + MIR SINE MIR 84 262 0 1962 147 0 14 chr3 142964093 142964386 -84560192 - AluJo SINE Alu -23 289 1 3260 106 9 0 chr3 142964409 142964853 -84559725 + MER83 LTR ERV1 1 448 0 440 196 59 10 chr3 142964929 142965031 -84559547 + MER5A DNA MER1_type 40 146 -43 402 273 8 16 chr3 142965104 142965225 -84559353 + L2 LINE L2 3185 3304 -9 225 246 15 0 chr3 142965688 142965753 -84558825 + L2 LINE L2 3229 3294 -19 1448 138 154 8 chr3 142965754 142966014 -84558564 - AluJo SINE Alu -4 298 1 2032 142 13 0 chr3 142966139 142966442 -84558136 - AluSx SINE Alu -5 307 1 2352 119 0 0 chr3 142967321 142967632 -84556946 - AluSx SINE Alu 0 312 2 2139 117 13 3 chr3 142968188 142968487 -84556091 - AluSx SINE Alu -10 302 1 22 56 0 0 chr3 142968521 142968557 -84556021 + AT_rich Low_complexity Low_complexity 1 36 0 274 193 0 18 chr3 142968558 142968615 -84555963 + AluJo SINE Alu 86 141 -161 2102 128 0 3 chr3 142968620 142968917 -84555661 + AluSx SINE Alu 11 306 -6 1473 165 8 12 chr3 142968946 142969176 -84555402 + AluJb SINE Alu 59 289 -23 180 0 0 0 chr3 142969176 142969196 -84555382 + (TTAA)n Simple_repeat Simple_repeat 2 21 0 1473 165 8 12 chr3 142969196 142969208 -84555370 + AluJb SINE Alu 289 300 -12 2364 101 3 0 chr3 142969250 142969547 -84555031 + AluSx SINE Alu 1 298 -14 26 0 0 0 chr3 142970393 142970419 -84554159 + AT_rich Low_complexity Low_complexity 1 26 0 2378 107 0 0 chr3 142970496 142970804 -84553774 + AluSx SINE Alu 1 308 -4 750 188 0 0 chr3 142970805 142970922 -84553656 + FLAM_C SINE Alu 1 117 -16 23 33 0 0 chr3 142970936 142970966 -84553612 + AT_rich Low_complexity Low_complexity 1 30 0 2249 118 0 3 chr3 142971279 142971592 -84552986 + AluSx SINE Alu 1 312 0 1168 157 10 25 chr3 142972068 142972265 -84552313 - AluJo SINE Alu -107 205 12 1903 141 3 23 chr3 142972327 142972632 -84551946 - AluSq SINE Alu -14 299 1 792 161 0 29 chr3 142973151 142973288 -84551290 + FLAM_C SINE Alu 1 133 0 2313 86 0 13 chr3 142973709 142974010 -84550568 - AluSg SINE Alu -12 298 2 218 276 157 89 chr3 142974365 142974881 -84549697 - L2 LINE L2 -785 2529 2050 1629 145 55 4 chr3 142974881 142975136 -84549442 + AluJb SINE Alu 16 283 -29 2295 124 0 0 chr3 142975136 142975442 -84549136 + AluSx SINE Alu 1 306 -6 218 276 157 89 chr3 142975442 142975511 -84549067 - L2 LINE L2 -1263 2051 1903 618 179 73 8 chr3 142975579 142975702 -84548876 + MLT2B1 LTR ERVL 379 509 -11 362 258 0 11 chr3 142976171 142976260 -84548318 + L1ME LINE L1 5591 5678 -443 2178 116 23 0 chr3 142976260 142976561 -84548017 + AluSq SINE Alu 1 308 -5 2096 121 3 20 chr3 142977462 142977759 -84546819 + AluSx SINE Alu 1 292 -20 189 161 0 0 chr3 142978083 142978114 -84546464 + MIR SINE MIR 64 94 -168 278 247 41 31 chr3 142978179 142978276 -84546302 + MIR SINE MIR 124 221 -41 723 271 118 44 chr3 142978516 142978948 -84545630 + MLT1F1 LTR MaLR 99 562 -5 1208 170 5 5 chr3 142979000 142979206 -84545372 + AluJo SINE Alu 87 292 -20 1441 147 87 23 chr3 142979272 142979537 -84545041 - AluJo SINE Alu -25 287 6 526 270 47 0 chr3 142980039 142980254 -84544324 + L1MB7 LINE L1 4971 5195 -951 2412 81 0 0 chr3 142980537 142980835 -84543743 + AluSx SINE Alu 1 298 -14 203 305 0 0 chr3 142981856 142981915 -84542663 + (CTG)n Simple_repeat Simple_repeat 2 60 0 23 54 0 0 chr3 142982537 142982574 -84542004 + GC_rich Low_complexity Low_complexity 1 37 0 2816 13 0 0 chr3 142983041 142983343 -84541235 - AluYa5 SINE Alu -9 302 1 225 304 65 22 chr3 142983582 142983674 -84540904 + MIR3 SINE MIR 88 183 -25 1835 100 0 0 chr3 142983705 142983936 -84540642 + AluSx SINE Alu 1 231 -81 3939 55 27 0 chr3 142983936 142984411 -84540167 + LTR2B LTR ERV1 1 488 -2 491 136 0 0 chr3 142984413 142984494 -84540084 + AluSp/q SINE Alu 228 308 -5 2453 88 0 0 chr3 142984496 142984802 -84539776 + AluY SINE Alu 1 306 -5 1913 218 48 34 chr3 142984804 142984977 -84539601 + L1MB7 LINE L1 5612 5781 -403 2327 99 17 0 chr3 142984977 142985279 -84539299 + AluSx SINE Alu 1 307 -5 611 191 17 9 chr3 142985288 142985403 -84539175 + FLAM_A SINE Alu 1 116 -17 1913 218 48 34 chr3 142985403 142985784 -84538794 + L1MB7 LINE L1 5788 6184 0 471 296 36 5 chr3 142985791 142985987 -84538591 - L2 LINE L2 -623 2691 2490 1318 157 23 54 chr3 142985993 142986254 -84538324 + LTR8 LTR ERV1 1 253 -438 1645 107 50 47 chr3 142986256 142986555 -84538023 + AluSp SINE Alu 1 300 -13 1099 172 0 0 chr3 142986557 142986720 -84537858 + AluJb SINE Alu 136 298 -14 430 200 168 0 chr3 142987091 142987216 -84537362 + MIR SINE MIR 4 149 -113 1348 193 49 69 chr3 142987217 142987564 -84537014 + MLT1A2 LTR MaLR 19 358 -16 627 237 102 37 chr3 142987981 142988101 -84536477 + L2 LINE L2 3016 3127 -186 2337 95 3 0 chr3 142988101 142988405 -84536173 - AluSx SINE Alu -7 305 1 627 237 102 37 chr3 142988405 142988529 -84536049 + L2 LINE L2 3127 3276 -37 517 231 85 0 chr3 142988551 142988695 -84535883 + MIR SINE MIR 7 162 -46 1838 143 29 38 chr3 142988705 142988844 -84535734 + AluJb SINE Alu 1 140 -172 2315 107 0 0 chr3 142988844 142989143 -84535435 + AluSx SINE Alu 1 299 -13 1838 143 29 38 chr3 142989143 142989318 -84535260 + AluJb SINE Alu 140 312 0 2331 102 3 6 chr3 142989627 142989941 -84534637 + AluSp SINE Alu 1 313 0 370 235 0 12 chr3 142990885 142990966 -84533612 + MER103 DNA DNA 43 122 -44 2087 115 23 30 chr3 142991068 142991372 -84533206 - AluSx SINE Alu -10 302 1 768 181 0 0 chr3 142991372 142991488 -84533090 - AluJo/FLAM SINE Alu -186 116 1 269 211 0 0 chr3 142991522 142991574 -84533004 + LTR30 LTR ERV1 1 52 -670 1309 105 104 23 chr3 142991574 142991819 -84532759 + LTR12 LTR ERV1 53 2021 -417 324 273 10 0 chr3 142991819 142991918 -84532660 + LTR30 LTR ERV1 544 643 -79 740 136 0 0 chr3 142991919 142992022 -84532556 + LTR12 LTR ERV1 481 583 -131 19561 114 9 12 chr3 142992043 142994861 -84529717 + HERV9 LTR ERV1 58 2866 -5533 927 115 31 0 chr3 142994853 142994983 -84529595 + LTR12 LTR ERV1 347 480 -234 * 2116 116 6 31 chr3 142995168 142995487 -84529091 + AluSx SINE Alu 1 311 -1 291 336 90 0 chr3 142996094 142996228 -84528350 - Charlie8 DNA MER1_type -2140 277 132 281 163 0 0 chr3 142996223 142996266 -84528312 + AluS SINE Alu 27 69 -232 * 244 195 0 0 chr3 142996257 142996298 -84528280 - Alu SINE Alu -258 44 4 * 284 271 42 51 chr3 142996302 142996334 -84528244 - Charlie8 DNA MER1_type -224 117 86 2443 82 0 0 chr3 142996334 142996628 -84527950 - AluY SINE Alu -17 294 1 284 271 42 51 chr3 142996628 142996713 -84527865 - Charlie8 DNA MER1_type -255 86 1 1607 141 0 43 chr3 142996819 142997075 -84527503 + AluSx SINE Alu 1 245 -67 1884 122 0 21 chr3 142997223 142997510 -84527068 + AluSx SINE Alu 30 310 -2 834 146 7 28 chr3 142997513 142997657 -84526921 + L1M4 LINE L1 5496 5636 -538 * 2664 188 149 0 chr3 142997633 142998341 -84526237 + L1P4 LINE L1 4556 5379 -783 1296 168 5 0 chr3 142998346 142998555 -84526023 + AluSg/x SINE Alu 85 294 -18 1356 129 88 0 chr3 142998558 142998854 -84525724 + L1P4 LINE L1 5373 5738 -428 1277 216 0 20 chr3 142998854 142999150 -84525428 + AluSx SINE Alu 1 290 -22 4479 140 28 25 chr3 142999171 142999543 -84525035 + L1PA16 LINE L1 5364 5734 -432 1841 166 23 13 chr3 142999543 142999851 -84524727 + AluJb SINE Alu 1 311 -1 2202 129 3 0 chr3 142999852 143000162 -84524416 + AluSx SINE Alu 2 312 0 4479 140 28 25 chr3 143000162 143000572 -84524006 + L1PA16 LINE L1 5733 6150 -16 2690 193 16 17 chr3 143000628 143000961 -84523617 + L1MB4 LINE L1 5595 5927 -253 783 144 151 183 chr3 143000961 143001426 -84523152 - LTR7 LTR ERV1 0 450 1 2690 193 16 17 chr3 143001426 143001626 -84522952 + L1MB4 LINE L1 5927 6129 -51 1638 176 30 23 chr3 143001626 143001928 -84522650 + AluJo SINE Alu 1 304 -8 2690 193 16 17 chr3 143001928 143001968 -84522610 + L1MB4 LINE L1 6129 6168 -12 1536 142 17 0 chr3 143001971 143002203 -84522375 - AluJb SINE Alu -1 311 76 971 151 13 0 chr3 143002303 143002462 -84522116 - MLT1B LTR MaLR -68 322 162 1511 151 162 42 chr3 143002465 143002649 -84521929 - LTR54B LTR ERV1 -1 497 337 1511 186 71 7 chr3 143002649 143002929 -84521649 + AluJo SINE Alu 2 299 -13 1511 151 162 42 chr3 143002929 143003176 -84521402 - LTR54B LTR ERV1 -161 337 14 2011 149 7 0 chr3 143003176 143003477 -84521101 - AluSx SINE Alu -9 303 1 2089 138 0 0 chr3 143004224 143004521 -84520057 + AluSx SINE Alu 1 297 -15 798 73 9 9 chr3 143004644 143004754 -84519824 + HY1 scRNA scRNA 1 110 -2 398 265 34 17 chr3 143004849 143004966 -84519612 + MIR3 SINE MIR 4 122 -86 2136 117 3 3 chr3 143005364 143005664 -84518914 + AluSx SINE Alu 1 300 -12 1605 185 0 10 chr3 143005847 143006145 -84518433 + AluJo SINE Alu 1 295 -17 1400 116 30 26 chr3 143006261 143006391 -84518187 + AluJb SINE Alu 1 135 -177 1694 135 14 35 chr3 143006391 143006712 -84517866 + AluSx SINE Alu 1 315 0 1400 116 30 26 chr3 143006712 143006813 -84517765 + AluJb SINE Alu 135 234 -78 333 68 0 0 chr3 143007608 143007652 -84516926 + (CAGCC)n Simple_repeat Simple_repeat 3 46 0 23 0 0 0 chr3 143007876 143007899 -84516679 + GC_rich Low_complexity Low_complexity 1 23 0 2176 74 10 0 chr3 143008316 143008486 -84516092 - AluSq SINE Alu -12 301 125 243 0 0 0 chr3 143008486 143008513 -84516065 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2176 74 10 0 chr3 143008513 143008640 -84515938 - AluSq SINE Alu -188 125 1 1949 76 31 17 chr3 143009045 143009333 -84515245 + AluSq SINE Alu 1 292 -21 22 35 0 0 chr3 143009467 143009496 -84515082 + AT_rich Low_complexity Low_complexity 1 29 0 1469 120 120 22 chr3 143009503 143009777 -84514801 + AluSx SINE Alu 1 301 -1 2144 95 0 0 chr3 143009777 143010083 -84514495 + AluSx SINE Alu 1 306 0 443 228 0 0 chr3 143010094 143010173 -84514405 + AluS SINE Alu 2 80 -233 323 189 0 0 chr3 143010173 143010226 -84514352 - Charlie3 DNA MER1_type -2657 53 1 872 164 19 13 chr3 143010486 143010645 -84513933 + FRAM SINE Alu 1 159 -17 1597 157 21 0 chr3 143010645 143010925 -84513653 + AluJo SINE Alu 27 312 0 272 271 115 16 chr3 143010929 143011051 -84513527 - MIR SINE MIR -109 153 20 1535 197 23 0 chr3 143012121 143012421 -84512157 - AluJo SINE Alu -5 307 1 1270 196 76 89 chr3 143013077 143013526 -84511052 - LTR7 LTR ERV1 -7 443 1 1900 88 0 8 chr3 143013624 143013884 -84510694 + AluSq SINE Alu 47 304 -9 712 117 0 29 chr3 143013886 143013989 -84510589 - AluS SINE Alu -212 101 2 279 0 0 0 chr3 143014435 143014466 -84510112 + (T)n Simple_repeat Simple_repeat 1 31 0 358 73 36 0 chr3 143014578 143014633 -84509945 - L1PA6 LINE L1 -7 6147 6091 625 221 34 41 chr3 143014633 143015096 -84509482 - ALR/Alpha Satellite centromeric 0 1538 1073 2044 121 0 19 chr3 143015096 143015410 -84509168 - AluSx SINE Alu -4 308 1 625 221 34 41 chr3 143015410 143015453 -84509125 - ALR/Alpha Satellite centromeric -465 1073 1031 294 29 0 0 chr3 143015453 143015488 -84509090 + (TA)n Simple_repeat Simple_repeat 1 35 0 1936 145 10 0 chr3 143015488 143015785 -84508793 - AluSx SINE Alu -12 300 1 625 221 34 41 chr3 143015785 143016182 -84508396 - ALR/Alpha Satellite centromeric -505 1033 1 409 127 0 0 chr3 143016182 143016237 -84508341 + AluSg/x SINE Alu 124 178 -132 501 240 36 35 chr3 143016237 143017828 -84506750 - ALR/Alpha Satellite centromeric -5 1593 1 473 236 36 66 chr3 143017918 143018010 -84506568 - ALR/Alpha Satellite centromeric -5 1005 912 1871 137 14 14 chr3 143018010 143018303 -84506275 - AluSx SINE Alu -19 293 1 473 236 36 66 chr3 143018303 143018447 -84506131 - ALR/Alpha Satellite centromeric -98 912 765 1937 132 10 7 chr3 143018447 143018757 -84505821 - AluSq SINE Alu -2 311 1 473 236 36 66 chr3 143018757 143018955 -84505623 - ALR/Alpha Satellite centromeric -245 765 1 421 246 34 34 chr3 143018986 143019335 -84505243 - ALR/Alpha Satellite centromeric -5 349 1 1929 125 0 14 chr3 143019406 143019720 -84504858 + AluSx SINE Alu 8 317 0 410 239 13 63 chr3 143019746 143019966 -84504612 - ALR/Alpha Satellite centromeric -5 209 1 290 140 0 10 chr3 143019972 143020025 -84504553 - Alu SINE Alu -261 40 1 * 400 263 47 24 chr3 143020017 143020564 -84504014 - ALR/Alpha Satellite centromeric -5 559 1 394 260 25 30 chr3 143020675 143021248 -84503330 - ALR/Alpha Satellite centromeric -5 570 1 480 246 40 39 chr3 143021344 143023267 -84501311 - ALR/Alpha Satellite centromeric -5 2300 70 2212 99 3 0 chr3 143023267 143023571 -84501007 - AluY SINE Alu -6 305 1 480 246 40 39 chr3 143023571 143023642 -84500936 - ALR/Alpha Satellite centromeric -2235 70 1 374 235 42 39 chr3 143023664 143023896 -84500682 - ALR/Alpha Satellite centromeric -4 232 1 1320 196 16 0 chr3 143023939 143024307 -84500271 + L1P LINE L1 4883 5309 -822 1916 103 0 4 chr3 143025196 143025457 -84499121 - AluSc SINE Alu -19 290 31 1912 187 58 32 chr3 143025457 143025987 -84498591 + pTR5 LTR ERV1 743 1286 -1152 597 243 40 7 chr3 143025972 143026124 -84498454 + pTR5 LTR ERV1 1187 1343 -1095 * 3222 138 160 90 chr3 143026141 143026909 -84497669 + LTR12 LTR ERV1 5 826 0 273 239 133 53 chr3 143028192 143028305 -84496273 - MER5B DNA MER1_type 0 178 57 254 153 24 47 chr3 143028315 143028400 -84496178 + (TATATG)n Simple_repeat Simple_repeat 5 87 0 235 341 122 0 chr3 143028971 143029135 -84495443 - MIR SINE MIR -56 206 23 2485 48 0 19 chr3 143029189 143029504 -84495074 - AluY SINE Alu -2 309 1 24 0 0 0 chr3 143030227 143030251 -84494327 + AT_rich Low_complexity Low_complexity 1 24 0 2020 124 0 0 chr3 143030469 143030776 -84493802 - AluSx SINE Alu 0 307 1 1323 76 0 6 chr3 143031584 143031755 -84492823 + AluSg SINE Alu 1 170 -140 382 61 0 0 chr3 143031900 143031949 -84492629 + AluSc SINE Alu 173 221 -78 * 1358 171 43 0 chr3 143031948 143032206 -84492372 + MER2 DNA MER2_type 77 345 0 189 107 0 0 chr3 143032209 143032237 -84492341 + (CATATA)n Simple_repeat Simple_repeat 2 29 0 556 77 0 0 chr3 143032239 143032317 -84492261 + L1MA1 LINE L1 6225 6302 0 27 49 0 0 chr3 143032317 143032358 -84492220 + AT_rich Low_complexity Low_complexity 1 41 0 1863 131 3 7 chr3 143032393 143032690 -84491888 - AluSq SINE Alu -17 296 1 2214 181 28 2 chr3 143033010 143033407 -84491171 - MER73 LTR ERVL 0 644 238 261 294 140 36 chr3 143036401 143036622 -84487956 - MIR SINE MIR -10 252 9 207 0 0 0 chr3 143037389 143037412 -84487166 + (A)n Simple_repeat Simple_repeat 1 23 0 578 235 135 35 chr3 143037891 143038121 -84486457 + MIR SINE MIR 10 262 0 194 260 0 20 chr3 143038594 143038644 -84485934 + L2 LINE L2 3021 3069 -203 861 261 94 37 chr3 143038673 143039159 -84485419 - L2 LINE L2 0 3313 2794 196 309 15 15 chr3 143039202 143039270 -84485308 + L2 LINE L2 3167 3234 -79 1972 135 0 19 chr3 143039450 143039761 -84484817 + AluJb SINE Alu 1 305 -7 1234 232 246 33 chr3 143040621 143042431 -84482147 - SATR1 Satellite Satellite -15 2195 1 783 220 291 0 chr3 143042469 143042737 -84481841 - SATR1 Satellite Satellite -108 362 17 1000 204 316 0 chr3 143042770 143043118 -84481460 - SATR1 Satellite Satellite -1 469 12 1112 221 238 39 chr3 143043141 143044719 -84479859 - SATR1 Satellite Satellite -2 1892 1 984 205 285 22 chr3 143044757 143045635 -84478943 - SATR1 Satellite Satellite -1 1109 1 511 255 336 10 chr3 143045657 143046179 -84478399 - SATR1 Satellite Satellite -3 691 1 1796 220 134 32 chr3 143046192 143047087 -84477491 - SATR1 Satellite Satellite -1 985 1 2237 175 106 11 chr3 143047121 143047688 -84476890 - SATR1 Satellite Satellite -1 621 1 35 24 0 0 chr3 143047757 143047799 -84476779 + AT_rich Low_complexity Low_complexity 1 42 0 303 179 7 64 chr3 143047838 143047978 -84476600 + (TTA)n Simple_repeat Simple_repeat 1 132 0 663 170 12 67 chr3 143048108 143048273 -84476305 + LTR2 LTR ERV1 272 427 -22 441 176 0 0 chr3 143048287 143048361 -84476217 - tRNA-Glu-GAG tRNA tRNA 0 75 2 32746 97 12 9 chr3 143048362 143052868 -84471710 + HERVE LTR ERV1 647 5165 -2648 2309 177 111 7 chr3 143052868 143054338 -84470240 - SATR1 Satellite Satellite 0 1623 1 2020 213 195 43 chr3 143054369 143056450 -84468128 - SATR1 Satellite Satellite -1 2396 1 1346 113 27 14 chr3 143056452 143056673 -84467905 - AluSq SINE Alu -89 224 1 740 243 40 0 chr3 143058568 143058770 -84465808 + MER6B DNA MER2_type 1 210 0 378 217 36 0 chr3 143058875 143058958 -84465620 - MER5B DNA MER1_type -6 172 87 270 0 0 0 chr3 143058983 143059013 -84465565 + (T)n Simple_repeat Simple_repeat 1 30 0 2084 113 0 40 chr3 143059189 143059515 -84465063 - AluSp SINE Alu 0 313 1 281 224 133 63 chr3 143059520 143059663 -84464915 - HsTC2 DNA Tc2 -113 1785 1633 1410 202 3 82 chr3 143059705 143059888 -84464690 + L1MA4 LINE L1 5771 5908 -392 1713 149 0 4 chr3 143059888 143060169 -84464409 + AluSx SINE Alu 1 280 -32 1410 202 3 82 chr3 143060169 143060376 -84464202 + L1MA4 LINE L1 5908 6130 -170 1950 131 3 3 chr3 143060456 143060762 -84463816 - AluSp SINE Alu -6 307 2 3010 235 27 43 chr3 143060808 143061800 -84462778 + L1MB3 LINE L1 4818 5824 -359 1842 125 4 4 chr3 143061800 143062079 -84462499 + AluSx SINE Alu 1 279 -33 230 71 0 24 chr3 143062085 143062127 -84462451 + (CAAAA)n Simple_repeat Simple_repeat 5 45 0 3010 235 27 43 chr3 143062127 143062231 -84462347 + L1MB3 LINE L1 5829 5933 -250 1912 155 0 0 chr3 143062231 143062535 -84462043 + AluSx SINE Alu 1 304 -8 3010 235 27 43 chr3 143062535 143062787 -84461791 + L1MB3 LINE L1 5933 6153 -30 25 0 0 0 chr3 143062804 143062829 -84461749 + AT_rich Low_complexity Low_complexity 1 25 0 212 158 0 0 chr3 143063569 143063607 -84460971 + (ATG)n Simple_repeat Simple_repeat 3 40 0 300 355 65 33 chr3 143063626 143063840 -84460738 - MIR SINE MIR -10 252 32 2125 99 0 7 chr3 143064234 143064537 -84460041 + AluSg SINE Alu 1 301 -9 187 356 59 0 chr3 143064582 143064683 -84459895 + MIR SINE MIR 30 136 -72 231 310 44 26 chr3 143064920 143065033 -84459545 + L2 LINE L2 3158 3272 0 1937 123 0 7 chr3 143065098 143065399 -84459179 - AluSc SINE Alu -10 299 1 949 228 242 29 chr3 143067096 143068340 -84456238 - SATR1 Satellite Satellite -1 1509 1 1416 243 163 35 chr3 143068392 143070691 -84453887 - SATR1 Satellite Satellite 0 2593 1 21 36 0 0 chr3 143070737 143070765 -84453813 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr3 143070782 143070808 -84453770 + AT_rich Low_complexity Low_complexity 1 26 0 236 221 12 55 chr3 143070852 143071015 -84453563 + (TTA)n Simple_repeat Simple_repeat 1 156 0 29332 97 10 11 chr3 143071043 143075105 -84449473 + HERVE LTR ERV1 1108 5165 -2648 2137 184 106 16 chr3 143075105 143077261 -84447317 - SATR1 Satellite Satellite 0 2348 1 804 236 278 3 chr3 143077289 143077620 -84446958 - SATR1 Satellite Satellite -1 469 48 1332 120 27 31 chr3 143077622 143077847 -84446731 - AluSq SINE Alu -89 224 1 768 213 46 0 chr3 143079743 143079940 -84444638 + MER6B DNA MER2_type 5 210 0 360 295 20 20 chr3 143080042 143080191 -84444387 - MER5B DNA MER1_type -3 175 27 2062 127 0 13 chr3 143080336 143080522 -84444056 - AluSp SINE Alu -1 312 130 207 0 0 0 chr3 143080522 143080545 -84444033 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2062 127 0 13 chr3 143080545 143080674 -84443904 - AluSp SINE Alu -183 130 1 304 252 105 35 chr3 143080679 143080822 -84443756 - HsTC2 DNA Tc2 -115 1783 1631 1106 229 15 80 chr3 143080860 143081043 -84443535 + L1MA4 LINE L1 5767 5913 -387 1656 157 0 4 chr3 143081043 143081324 -84443254 + AluSx SINE Alu 1 280 -32 1106 229 15 80 chr3 143081324 143081529 -84443049 + L1MA4 LINE L1 5913 6130 -170 2727 0 0 0 chr3 143081761 143082060 -84442518 - AluYa5 SINE Alu -12 299 1 448 308 26 13 chr3 143082071 143082227 -84442351 - MIR SINE MIR -64 198 41 694 204 43 104 chr3 143082256 143082487 -84442091 + MER20 DNA MER1_type 1 217 -2 1307 197 14 30 chr3 143083804 143084099 -84440479 - AluJb SINE Alu -22 290 1 647 290 16 36 chr3 143084182 143084430 -84440148 - MIR SINE MIR -12 250 8 401 269 109 74 chr3 143086553 143086985 -84437593 - L2 LINE L2 -11 3261 2815 209 287 109 10 chr3 143087473 143087574 -84437004 + L2 LINE L2 3178 3288 -25 505 266 16 0 chr3 143087676 143087800 -84436778 - MIR SINE MIR -38 224 99 2721 227 55 7 chr3 143087816 143088419 -84436159 + ERVL LTR ERVL 1518 2149 -3615 190 367 17 0 chr3 143088424 143088484 -84436094 - MIR SINE MIR -187 75 15 1793 143 4 0 chr3 143088789 143089097 -84435481 + AluSc SINE Alu 1 309 0 339 87 0 0 chr3 143089335 143089381 -84435197 - Alu SINE Alu -9 292 247 2233 190 109 4 chr3 143089482 143090763 -84433815 - SATR1 Satellite Satellite 0 1415 1 1844 173 105 30 chr3 143090791 143091218 -84433360 - SATR1 Satellite Satellite 0 470 12 852 227 278 3 chr3 143091246 143091577 -84433001 - SATR1 Satellite Satellite -1 469 48 1174 111 131 5 chr3 143091579 143091778 -84432800 - AluSq SINE Alu -89 224 1 717 228 46 0 chr3 143093671 143093868 -84430710 + MER6B DNA MER2_type 5 210 0 409 228 67 74 chr3 143093973 143094122 -84430456 - MER5B DNA MER1_type -6 172 25 1973 133 0 28 chr3 143094265 143094587 -84429991 - AluSp SINE Alu 0 313 1 243 276 103 35 chr3 143094592 143094737 -84429841 - HsTC2 DNA Tc2 -115 1783 1629 1211 235 3 72 chr3 143094771 143094954 -84429624 + L1MA4 LINE L1 5767 5910 -390 1537 171 0 4 chr3 143094954 143095235 -84429343 + AluSx SINE Alu 1 280 -32 1211 235 3 72 chr3 143095235 143095442 -84429136 + L1MA4 LINE L1 5910 6130 -170 2003 113 3 3 chr3 143095521 143095822 -84428756 - AluSp SINE Alu -12 301 1 2894 248 23 45 chr3 143095867 143096860 -84427718 + L1MB3 LINE L1 4818 5831 -352 1785 130 3 23 chr3 143096860 143097161 -84427417 + AluSx SINE Alu 1 295 -17 2894 248 23 45 chr3 143097161 143097279 -84427299 + L1MB3 LINE L1 5831 5950 -233 1730 145 35 0 chr3 143097279 143097562 -84427016 + AluSx SINE Alu 3 295 -17 2894 248 23 45 chr3 143097562 143097814 -84426764 + L1MB3 LINE L1 5950 6153 -30 31 0 0 0 chr3 143097834 143097865 -84426713 + AT_rich Low_complexity Low_complexity 1 31 0 3052 210 18 64 chr3 143098324 143099340 -84425238 + LTR5 LTR ERVK 1 969 0 291 360 56 23 chr3 143099666 143099880 -84424698 - MIR SINE MIR -10 252 32 1977 128 0 6 chr3 143100273 143100585 -84423993 + AluSg SINE Alu 1 310 0 189 265 68 76 chr3 143100621 143100753 -84423825 + MIR3 SINE MIR 6 136 -72 266 231 75 75 chr3 143100970 143101104 -84423474 + L2 LINE L2 3139 3272 0 2140 96 0 3 chr3 143101165 143101466 -84423112 - AluY SINE Alu -11 300 1 1089 237 251 18 chr3 143103167 143106025 -84418553 - SATR1 Satellite Satellite -1 3522 1 1405 237 107 35 chr3 143106037 143107231 -84417347 - SATR1 Satellite Satellite -5 1280 1 21 36 0 0 chr3 143107279 143107307 -84417271 + AT_rich Low_complexity Low_complexity 1 28 0 283 206 11 71 chr3 143107326 143107510 -84417068 + (TTA)n Simple_repeat Simple_repeat 3 175 0 22 0 0 0 chr3 143107513 143107535 -84417043 + AT_rich Low_complexity Low_complexity 1 22 0 27764 100 12 11 chr3 143107589 143111641 -84412937 + HERVE LTR ERV1 1108 5165 -2648 2179 178 109 15 chr3 143111641 143113654 -84410924 - SATR1 Satellite Satellite -18 2203 1 900 222 256 17 chr3 143113685 143114154 -84410424 - SATR1 Satellite Satellite -1 581 1 1279 111 131 5 chr3 143114156 143114355 -84410223 - AluSq SINE Alu -89 224 1 677 228 46 0 chr3 143116248 143116445 -84408133 + MER6B DNA MER2_type 5 210 0 379 228 67 74 chr3 143116550 143116699 -84407879 - MER5B DNA MER1_type -6 172 25 2147 130 0 28 chr3 143116842 143117164 -84407414 - AluSp SINE Alu 0 313 1 238 276 103 35 chr3 143117169 143117314 -84407264 - HsTC2 DNA Tc2 -115 1783 1629 1216 249 2 67 chr3 143117348 143117531 -84407047 + L1MA4 LINE L1 5767 5960 -340 1631 169 7 4 chr3 143117531 143117810 -84406768 + AluSx SINE Alu 1 280 -32 1216 249 2 67 chr3 143117810 143118047 -84406531 + L1MA4 LINE L1 5960 6160 -140 2113 122 3 3 chr3 143118093 143118396 -84406182 - AluSp SINE Alu -10 303 1 2815 243 31 38 chr3 143118441 143119425 -84405153 + L1MB3 LINE L1 4818 5808 -375 1947 141 3 28 chr3 143119425 143119745 -84404833 + AluSx SINE Alu 1 312 0 2815 243 31 38 chr3 143119745 143119857 -84404721 + L1MB3 LINE L1 5808 5919 -264 2046 133 0 0 chr3 143119857 143120143 -84404435 + AluSx SINE Alu 10 295 -17 2815 243 31 38 chr3 143120143 143120388 -84404190 + L1MB3 LINE L1 5919 6148 -35 3296 216 20 78 chr3 143120902 143121930 -84402648 + LTR5 LTR ERVK 1 969 0 326 374 47 14 chr3 143122254 143122468 -84402110 - MIR SINE MIR -10 252 32 2078 117 0 55 chr3 143122862 143123188 -84401390 + AluSg SINE Alu 1 308 -2 276 235 31 10 chr3 143124311 143124409 -84400169 + L1M4 LINE L1 4623 4722 -1424 192 77 0 0 chr3 143124414 143124440 -84400138 + (TA)n Simple_repeat Simple_repeat 2 27 0 267 276 62 56 chr3 143124449 143124786 -84399792 - L1M4 LINE L1 -3201 2945 2607 297 243 221 66 chr3 143124827 143125008 -84399570 - MLT1J2 LTR MaLR -2 448 240 487 194 104 42 chr3 143125020 143125209 -84399369 - MLT1J1 LTR MaLR -198 211 1 238 307 35 0 chr3 143125233 143125347 -84399231 - L1M4 LINE L1 -3609 2537 2420 184 326 112 11 chr3 143125423 143125512 -84399066 - MIR3 SINE MIR -54 154 57 3797 135 116 68 chr3 143125616 143127011 -84397567 - pTR5 LTR ERV1 0 2438 66 443 272 258 16 chr3 143128298 143128732 -84395846 + L2 LINE L2 2243 2781 -533 317 277 9 36 chr3 143128812 143128924 -84395654 + L2 LINE L2 2920 3028 -244 246 32 0 0 chr3 143128986 143129017 -84395561 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1989 144 0 11 chr3 143129017 143129301 -84395277 - AluSq SINE Alu -32 281 1 181 309 21 41 chr3 143129612 143129709 -84394869 - MER5B DNA MER1_type -5 173 79 190 340 0 0 chr3 143129630 143129683 -84394895 + MER5A DNA MER1_type 35 87 -102 403 313 169 0 chr3 143129701 143129861 -84394717 + L2 LINE L2 2519 2705 -609 1377 177 40 12 chr3 143129861 143130110 -84394468 - AluJo SINE Alu -15 297 42 231 157 0 0 chr3 143130179 143130230 -84394348 + CT-rich Low_complexity Low_complexity 2 52 0 2475 68 0 0 chr3 143130876 143131168 -84393410 + AluY SINE Alu 1 292 -19 1926 140 7 4 chr3 143131401 143131715 -84392863 - AluSc SINE Alu 0 315 1 2592 234 55 7 chr3 143132085 143132688 -84391890 - ERVL LTR ERVL -3615 2149 1518 483 266 16 0 chr3 143132704 143132828 -84391750 + MIR SINE MIR 99 224 -38 207 343 0 0 chr3 143132926 143132993 -84391585 - L2 LINE L2 -21 3251 3185 363 280 104 77 chr3 143133547 143133951 -84390627 + L2 LINE L2 2847 3261 -11 623 294 16 36 chr3 143135188 143135436 -84389142 + MIR SINE MIR 8 250 -12 1664 182 3 27 chr3 143135519 143135816 -84388762 + AluJb SINE Alu 1 290 -22 683 235 50 54 chr3 143137133 143137366 -84387212 - MER20 DNA MER1_type -2 217 1 373 316 32 13 chr3 143137395 143137550 -84387028 + MIR SINE MIR 41 198 -64 2108 130 3 3 chr3 143137581 143137882 -84386696 - AluSc SINE Alu -8 301 1 2636 231 55 7 chr3 143138199 143138802 -84385776 - ERVL LTR ERVL -3615 2149 1518 512 231 9 0 chr3 143138818 143138926 -84385652 + MIR SINE MIR 99 207 -55 217 309 91 0 chr3 143139034 143139144 -84385434 - L2 LINE L2 -16 3297 3178 363 294 104 70 chr3 143139620 143140063 -84384515 + L2 LINE L2 2804 3261 -11 580 303 14 23 chr3 143142203 143142424 -84382154 + MIR SINE MIR 32 250 -12 1452 195 14 37 chr3 143142507 143142804 -84381774 + AluJb SINE Alu 1 290 -22 683 234 50 54 chr3 143144113 143144346 -84380232 - MER20 DNA MER1_type -2 217 1 387 331 43 11 chr3 143144375 143144559 -84380019 + MIR SINE MIR 41 230 -32 2218 125 0 0 chr3 143144563 143144867 -84379711 - AluSx SINE Alu -8 304 1 208 391 8 0 chr3 143146047 143146180 -84378398 - L2 LINE L2 -1026 2288 2155 1383 155 43 0 chr3 143146208 143146415 -84378163 - AluSx SINE Alu -96 216 1 25 31 0 0 chr3 143146415 143146447 -84378131 + AT_rich Low_complexity Low_complexity 1 32 0 2069 125 20 13 chr3 143146645 143146950 -84377628 + AluSx SINE Alu 3 309 -3 21 0 0 0 chr3 143146958 143146979 -84377599 + AT_rich Low_complexity Low_complexity 1 21 0 2189 147 69 50 chr3 143147014 143147341 -84377237 - L1MA8 LINE L1 -3 6288 5946 2062 148 7 3 chr3 143147341 143147651 -84376927 - AluJo SINE Alu -1 311 1 2189 147 69 50 chr3 143147651 143147827 -84376751 - L1MA8 LINE L1 -345 5946 5775 966 195 36 0 chr3 143148234 143148429 -84376149 + MER58A DNA MER1_type 9 210 -14 2065 137 14 0 chr3 143149427 143149711 -84374867 + AluSx SINE Alu 1 288 -24 1443 151 36 0 chr3 143150323 143150542 -84374036 + AluSg SINE Alu 1 227 -83 482 142 19 47 chr3 143150624 143150730 -84373848 + AluSg SINE Alu 207 309 0 2029 81 3 0 chr3 143150819 143151103 -84373475 - L1PA8 LINE L1 -2 6170 5886 302 334 57 23 chr3 143151177 143151472 -84373106 - L1ME3A LINE L1 -245 5925 5612 304 271 0 52 chr3 143151794 143151890 -84372688 + MIR SINE MIR 102 192 -70 733 214 22 0 chr3 143152485 143152663 -84371915 - MER53 DNA DNA 0 189 8 2322 97 13 16 chr3 143153366 143153674 -84370904 - AluSq SINE Alu -6 307 1 279 272 50 76 chr3 143153827 143154179 -84370399 + L2 LINE L2 2914 3254 -18 306 232 168 32 chr3 143154184 143154309 -84370269 - MIR SINE MIR -115 147 6 725 150 7 0 chr3 143155346 143155493 -84369085 + (TCCA)n Simple_repeat Simple_repeat 1 148 0 486 246 0 0 chr3 143155542 143155779 -84368799 + (TCCA)n Simple_repeat Simple_repeat 1 237 0 482 272 92 11 chr3 143155852 143156036 -84368542 + MIR SINE MIR 12 210 -52 209 390 25 8 chr3 143156164 143156282 -84368296 - L2 LINE L2 -163 3109 2990 205 355 9 37 chr3 143156479 143156586 -84367992 + MIR SINE MIR 113 216 -46 2059 158 3 0 chr3 143156700 143157003 -84367575 + AluSx SINE Alu 1 304 -8 258 224 107 4 chr3 143157374 143157465 -84367113 + MIR SINE MIR 63 161 -47 1946 153 20 10 chr3 143157904 143158204 -84366374 - AluJb SINE Alu -9 303 1 421 217 115 83 chr3 143158206 143158520 -84366058 - L1MC5 LINE L1 -28 7933 7610 2003 118 2 1 chr3 143158658 143158947 -84365631 + AluSc SINE Alu 1 257 -52 242 261 67 79 chr3 143159244 143159409 -84365169 - MER5A DNA MER1_type -3 186 24 2118 137 3 16 chr3 143159956 143160262 -84364316 + AluSx SINE Alu 1 302 -10 1823 134 8 4 chr3 143160852 143161114 -84363464 + AluSx SINE Alu 1 263 -49 773 193 193 27 chr3 143161187 143161524 -84363054 - HAL1b LINE L1 -28 1320 928 929 264 118 16 chr3 143162015 143162465 -84362113 - HAL1b LINE L1 -415 933 438 2164 97 7 17 chr3 143162467 143162765 -84361813 - AluY SINE Alu -16 295 1 225 268 49 0 chr3 143163038 143163120 -84361458 - L2 LINE L2 -220 3052 2967 1309 189 39 142 chr3 143163135 143163594 -84360984 + MLT2B1 LTR ERVL 3 414 0 599 76 0 0 chr3 143164165 143164244 -84360334 + MADE1 DNA Mariner 2 80 0 626 346 23 20 chr3 143165591 143165894 -84358684 + MLT1I LTR MaLR 103 406 -3 790 224 14 33 chr3 143167090 143167304 -84357274 - MER20 DNA MER1_type -9 210 1 1704 165 3 29 chr3 143167453 143167762 -84356816 - AluJo SINE Alu -9 303 3 795 227 123 38 chr3 143168112 143168449 -84356129 + L1MB8 LINE L1 5738 6118 -54 830 168 0 0 chr3 143168521 143168658 -84355920 + FLAM_C SINE Alu 1 137 -6 1111 101 0 0 chr3 143168662 143168801 -84355777 + AluSx SINE Alu 1 139 -174 1215 138 11 0 chr3 143169678 143169852 -84354726 + AluSx SINE Alu 130 305 -7 962 142 0 20 chr3 143169856 143170004 -84354574 + FRAM SINE Alu 2 146 -30 356 113 32 0 chr3 143170006 143170068 -84354510 + (CATA)n Simple_repeat Simple_repeat 2 65 0 2739 137 18 18 chr3 143170367 143170812 -84353766 - L1MA7 LINE L1 -232 6059 5615 1001 167 88 0 chr3 143170807 143171023 -84353555 + L1MA7 LINE L1 6051 6285 -6 * 243 0 0 0 chr3 143171896 143171923 -84352655 + (T)n Simple_repeat Simple_repeat 1 27 0 204 236 19 142 chr3 143171987 143172093 -84352485 - L2 LINE L2 -7 3265 3173 3163 204 20 77 chr3 143172968 143173995 -84350583 - LTR5 LTR ERVK 0 969 1 1110 169 6 6 chr3 143173997 143174175 -84350403 - HERVK LTR ERVK -2 7241 7064 322 286 13 26 chr3 143174260 143174414 -84350164 + CT-rich Low_complexity Low_complexity 1 152 0 2636 104 8 0 chr3 143174516 143174881 -84349697 - HERVK LTR ERVK -1720 5523 5156 1015 124 45 6 chr3 143175280 143175457 -84349121 - L1MA4 LINE L1 -7 6293 6110 5654 151 42 4 chr3 143175465 143176608 -84347970 + L1PB1 LINE L1 4295 5393 -758 2249 94 3 0 chr3 143176608 143176895 -84347683 + AluSg SINE Alu 1 288 -22 197 33 33 0 chr3 143176898 143176928 -84347650 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 5654 151 42 4 chr3 143176928 143177223 -84347355 + L1PB1 LINE L1 5394 5676 -475 216 0 0 0 chr3 143177223 143177247 -84347331 + (TA)n Simple_repeat Simple_repeat 1 24 0 180 0 0 0 chr3 143177246 143177266 -84347312 + (CA)n Simple_repeat Simple_repeat 2 21 0 * 5654 151 42 4 chr3 143177247 143177615 -84346963 + L1PB1 LINE L1 5676 6151 0 3865 133 20 109 chr3 143177618 143178495 -84346083 - L1MA4 LINE L1 -175 6125 5327 777 189 7 0 chr3 143178478 143178631 -84345947 - L1P LINE L1 -942 5204 5051 * 2037 133 14 0 chr3 143178732 143179018 -84345560 - AluY SINE Alu -21 290 1 1714 181 0 35 chr3 143179022 143179337 -84345241 - AluJo SINE Alu -8 304 1 1233 149 14 19 chr3 143179722 143179936 -84344642 + MER20 DNA MER1_type 7 219 0 390 215 97 0 chr3 143180090 143180183 -84344395 - MER91C DNA MER1_type -15 125 24 283 262 99 50 chr3 143181071 143181212 -84343366 + MLT1K LTR MaLR 116 263 -325 1526 181 31 31 chr3 143181493 143181786 -84342792 - AluJo SINE Alu -14 298 6 334 278 42 0 chr3 143181827 143181899 -84342679 - AluJ/FLAM SINE Alu -227 75 1 1735 192 45 51 chr3 143181911 143182002 -84342576 + MLT1C LTR MaLR 3 93 -374 2170 117 7 7 chr3 143182002 143182310 -84342268 + AluSp SINE Alu 1 308 -5 1735 192 45 51 chr3 143182310 143182686 -84341892 + MLT1C LTR MaLR 93 467 0 2493 79 0 0 chr3 143182691 143182995 -84341583 - AluY SINE Alu -7 304 1 1167 244 75 22 chr3 143183284 143183559 -84341019 + MLT1E1 LTR MaLR 3 262 -392 2347 109 0 0 chr3 143183559 143183863 -84340715 - AluSx SINE Alu -8 304 1 1167 244 75 22 chr3 143183863 143184130 -84340448 + MLT1E1 LTR MaLR 262 654 0 2195 144 0 0 chr3 143184178 143184490 -84340088 - AluSx SINE Alu 0 312 1 43349 53 4 4 chr3 143184913 143191065 -84333513 - L1PA4 LINE L1 0 6155 1 265 274 94 0 chr3 143191172 143191301 -84333277 + L2 LINE L2 2916 3066 -247 354 323 65 13 chr3 143191454 143191686 -84332892 - L2 LINE L2 -361 2953 2710 24 77 0 0 chr3 143191700 143191752 -84332826 + AT_rich Low_complexity Low_complexity 1 52 0 2117 151 0 0 chr3 143191760 143192071 -84332507 - AluSx SINE Alu -1 311 1 1347 174 25 39 chr3 143192096 143192378 -84332200 + AluJo SINE Alu 1 278 -34 600 206 38 0 chr3 143192881 143193012 -84331566 + L1MB4 LINE L1 6045 6180 0 2185 128 0 0 chr3 143193020 143193317 -84331261 + AluSx SINE Alu 1 297 -15 2094 113 3 42 chr3 143193479 143193790 -84330788 + AluJo SINE Alu 5 303 -9 1382 234 14 0 chr3 143193959 143194254 -84330324 + AluJo SINE Alu 2 300 -12 1429 194 33 30 chr3 143194272 143194601 -84329977 - L1MB5 LINE L1 -32 6142 5813 345 216 35 60 chr3 143194612 143194728 -84329850 + MER58C DNA MER1_type 103 215 0 231 250 125 27 chr3 143195113 143195225 -84329353 + MIR SINE MIR 3 125 -137 624 229 54 24 chr3 143195478 143195644 -84328934 + MLT1I LTR MaLR 232 402 -7 2264 101 20 0 chr3 143196413 143196711 -84327867 - AluSx SINE Alu -6 306 3 252 179 64 39 chr3 143197137 143197215 -84327363 - MLT1K LTR MaLR -1 587 508 1102 294 26 0 chr3 143197234 143197537 -84327041 - LTR16C LTR ERVL -17 474 164 2000 133 7 17 chr3 143197537 143197839 -84326739 - AluSg SINE Alu -11 299 1 372 266 39 73 chr3 143197996 143198255 -84326323 - MLT1K LTR MaLR -159 429 180 1152 99 4 2 chr3 143198454 143198708 -84325870 + AluSg SINE Alu 10 301 -11 315 0 0 0 chr3 143198994 143199029 -84325549 + (TG)n Simple_repeat Simple_repeat 1 35 0 485 247 62 17 chr3 143199029 143199197 -84325381 + MLT1H LTR MaLR 12 193 -356 590 100 0 118 chr3 143199197 143199240 -84325338 + MER4A LTR ERV1 2 48 -616 2283 92 0 10 chr3 143199240 143199543 -84325035 + AluSx SINE Alu 1 300 -12 590 100 0 118 chr3 143199543 143199609 -84324969 + MER4A LTR ERV1 48 98 -566 1880 99 169 91 chr3 143199609 143199982 -84324596 + MER4A LTR ERV1 263 664 0 304 275 194 19 chr3 143200131 143200342 -84324236 + MLT1H LTR MaLR 348 595 0 2423 92 3 0 chr3 143200961 143201267 -84323311 + AluSp SINE Alu 1 307 -6 4529 57 2 2 chr3 143201519 143202077 -84322501 - LTR6B LTR ERV1 0 558 1 2244 117 0 3 chr3 143202077 143202394 -84322184 - HERVS71 LTR ERV1 -69 8909 8594 * 14613 132 14 1 chr3 143202391 143205206 -84319372 - HERVS71 LTR ERV1 -1192 7786 4870 22046 133 25 2 chr3 143205221 143208377 -84316201 - HERVS71 LTR ERV1 -5748 3230 4 4022 96 18 4 chr3 143208379 143208929 -84315649 - LTR6B LTR ERV1 0 558 1 231 313 112 6 chr3 143208936 143209115 -84315463 - L3 LINE CR1 -200 1377 1180 1060 176 18 50 chr3 143209132 143209237 -84315341 - MER58A DNA MER1_type -2205 215 108 2515 133 78 2 chr3 143209237 143209635 -84314943 + MSTA LTR MaLR 1 428 0 1060 176 18 50 chr3 143209635 143209751 -84314827 - MER58A DNA MER1_type -2312 108 1 1885 143 10 3 chr3 143209791 143210091 -84314487 - AluSq SINE Alu -11 302 1 960 102 0 0 chr3 143210091 143210218 -84314360 - AluSq/x SINE Alu -178 135 9 223 370 20 34 chr3 143210236 143210382 -84314196 - L3 LINE CR1 -381 1196 1053 1061 303 98 43 chr3 143211043 143211277 -84313301 + L2 LINE L2 2125 2345 -968 1488 157 0 67 chr3 143211277 143211590 -84312988 + AluJo SINE Alu 1 292 -20 1061 303 98 43 chr3 143211590 143212283 -84312295 + L2 LINE L2 2345 3101 -212 3550 123 86 26 chr3 143212292 143213364 -84311214 + MER11A LTR ERVK 1 1236 0 481 295 7 22 chr3 143213391 143213530 -84311048 + L2 LINE L2 3136 3272 0 802 230 42 98 chr3 143213867 143213945 -84310633 - MLT1I LTR MaLR -7 402 321 1788 140 32 4 chr3 143213945 143214224 -84310354 - AluSx SINE Alu -25 287 1 802 230 42 98 chr3 143214224 143214480 -84310098 - MLT1I LTR MaLR -88 321 87 1943 141 0 0 chr3 143214648 143214945 -84309633 - AluSx SINE Alu -15 297 1 370 333 55 68 chr3 143214996 143215215 -84309363 + MIR SINE MIR 1 216 -46 2115 114 13 0 chr3 143215219 143215518 -84309060 - AluSc SINE Alu -6 303 1 277 336 41 18 chr3 143215691 143215838 -84308740 + MIR3 SINE MIR 46 192 -54 2108 112 0 3 chr3 143215886 143216181 -84308397 - AluSc SINE Alu -15 294 1 1881 199 185 54 chr3 143216192 143216770 -84307808 - MLT1E1 LTR MaLR 0 654 1 1198 91 0 34 chr3 143216900 143217075 -84307503 + AluSc SINE Alu 1 169 -140 493 145 0 137 chr3 143217075 143217206 -84307372 - LTR2B LTR ERV1 -106 384 272 7812 48 5 0 chr3 143217234 143218201 -84306377 + L1P LINE L1 4279 5250 -896 2112 181 147 5 chr3 143218201 143218643 -84305935 + MLT1E LTR MaLR 89 593 0 204 286 33 55 chr3 143218901 143218930 -84305648 + L2 LINE L2 3201 3229 -84 1918 139 17 0 chr3 143218930 143219224 -84305354 - AluSx SINE Alu -13 299 1 204 286 33 55 chr3 143219224 143219285 -84305293 + L2 LINE L2 3229 3289 -24 225 324 28 60 chr3 143219313 143219495 -84305083 - MER5A DNA MER1_type -11 178 3 610 200 8 24 chr3 143219581 143219706 -84304872 + MER5B DNA MER1_type 5 127 -51 384 22 0 0 chr3 143219706 143219751 -84304827 + (TG)n Simple_repeat Simple_repeat 2 46 0 1878 130 7 3 chr3 143219751 143220035 -84304543 - AluSx SINE Alu -26 286 2 1250 180 21 57 chr3 143220040 143220323 -84304255 - L1MB5 LINE L1 0 6174 5902 497 239 182 23 chr3 143220293 143220469 -84304109 + L1MB5 LINE L1 5684 5887 -287 * 327 153 17 0 chr3 143220469 143220528 -84304050 + MER5B DNA MER1_type 119 178 0 1354 172 0 5 chr3 143220725 143220946 -84303632 - AluSx SINE Alu -92 220 1 2012 123 0 3 chr3 143221063 143221364 -84303214 + AluSc SINE Alu 1 300 -9 189 203 54 68 chr3 143221612 143221686 -84302892 + L3 LINE CR1 643 715 -862 180 0 0 0 chr3 143221984 143222004 -84302574 + (A)n Simple_repeat Simple_repeat 1 20 0 551 324 34 4 chr3 143222125 143222387 -84302191 + L2 LINE L2 2458 2727 -587 2121 64 4 4 chr3 143222435 143222738 -84301840 + AluY SINE Alu 1 303 0 228 300 0 0 chr3 143222793 143222853 -84301725 - MIR SINE MIR -60 148 89 335 311 35 81 chr3 143222894 143222996 -84301582 + L2 LINE L2 2804 2909 -363 2217 104 0 0 chr3 143222996 143223295 -84301283 + AluSq SINE Alu 1 299 -14 335 311 35 81 chr3 143223295 143223452 -84301126 + L2 LINE L2 2909 3051 -221 941 221 34 0 chr3 143223452 143223656 -84300922 - L1MB7 LINE L1 0 6184 5974 1146 98 75 0 chr3 143223659 143223832 -84300746 - AluSg/x SINE Alu -23 287 102 2029 184 24 0 chr3 143223832 143224208 -84300370 - L1MB7 LINE L1 -219 5959 5575 597 254 66 13 chr3 143224376 143224604 -84299974 - Charlie5 DNA MER1_type -42 2570 2331 1960 133 3 3 chr3 143224870 143225171 -84299407 - AluSc SINE Alu -8 301 1 568 279 91 44 chr3 143226126 143226423 -84298155 + MLT1H LTR MaLR 41 351 -198 421 176 39 98 chr3 143226421 143226523 -84298055 + MLT1H LTR MaLR 454 549 0 * 1364 190 23 39 chr3 143226698 143227008 -84297570 - AluJo SINE Alu -7 305 1 864 275 9 0 chr3 143227128 143227346 -84297232 + MER58A DNA MER1_type 4 223 -1 13498 187 39 35 chr3 143227563 143227974 -84296604 + L1M2 LINE L1 985 1393 -5455 2162 109 3 6 chr3 143227974 143228285 -84296293 + AluSg SINE Alu 1 310 0 13498 187 39 35 chr3 143228285 143229329 -84295249 + L1M2 LINE L1 1393 2431 -4417 957 196 0 0 chr3 143229329 143229487 -84295091 + FRAM SINE Alu 1 158 -8 13498 187 39 35 chr3 143229487 143229751 -84294827 + L1M2 LINE L1 2431 2692 -4156 2227 120 48 31 chr3 143229751 143230109 -84294469 - THE1B LTR MaLR 0 364 1 11117 106 19 11 chr3 143230109 143231677 -84292901 - THE1B-int LTR MaLR 0 1580 1 2122 144 48 20 chr3 143231677 143232031 -84292547 - THE1B LTR MaLR 0 364 1 13498 187 39 35 chr3 143232031 143233189 -84291389 + L1M2 LINE L1 2692 3844 -3004 243 0 0 0 chr3 143233189 143233216 -84291362 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 13498 187 39 35 chr3 143233216 143234239 -84290339 + L1M2 LINE L1 3844 4861 -1987 2028 134 10 0 chr3 143234239 143234538 -84290040 + AluSx SINE Alu 1 302 -10 13498 187 39 35 chr3 143234538 143235037 -84289541 + L1M2 LINE L1 4861 5356 -1492 2262 66 0 23 chr3 143235037 143235338 -84289240 + AluY SINE Alu 1 294 -17 13498 187 39 35 chr3 143235338 143235827 -84288751 + L1M2 LINE L1 5356 5900 -948 1165 200 0 5 chr3 143235927 143236147 -84288431 - AluSx SINE Alu -93 219 1 293 287 28 61 chr3 143236165 143236346 -84288232 - L1MC5 LINE L1 -51 7910 7736 180 0 0 0 chr3 143236381 143236401 -84288177 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 459 248 150 7 chr3 143236504 143236657 -84287921 - MER5A DNA MER1_type 0 189 15 648 219 176 16 chr3 143236854 143236919 -84287659 - MLT1D LTR MaLR 0 484 431 1893 145 3 7 chr3 143236919 143237223 -84287355 + AluSx SINE Alu 1 303 -9 648 219 176 16 chr3 143237223 143237396 -84287182 - MLT1D LTR MaLR -53 431 206 1870 96 48 8 chr3 143237438 143237783 -84286795 + LTR7 LTR ERV1 1 448 -2 19349 91 52 22 chr3 143237785 143240682 -84283896 + HERVH LTR ERV1 1 2984 -4729 6104 101 2 2 chr3 143240678 143241534 -84283044 + HERVH LTR ERV1 3138 3993 -3720 * 4485 143 0 1 chr3 143241536 143242195 -84282383 + HERVH LTR ERV1 4488 5145 -2568 1267 126 60 5 chr3 143242192 143242407 -84282171 + HERVH LTR ERV1 5593 5819 -1894 * 2276 109 53 16 chr3 143242407 143242783 -84281795 + HERVH LTR ERV1 7324 7713 0 2643 75 124 12 chr3 143242784 143243186 -84281392 + LTR7 LTR ERV1 2 448 -2 2190 97 3 0 chr3 143243202 143243500 -84281078 - AluSp SINE Alu -12 301 3 649 226 27 32 chr3 143243510 143243696 -84280882 - MLT1D LTR MaLR -320 185 1 3582 22 5 0 chr3 143243807 143244221 -84280357 + L1PA2 LINE L1 5740 6155 0 290 339 25 17 chr3 143245218 143245336 -84279242 - L2 LINE L2 -15 3298 3180 1805 146 6 41 chr3 143245374 143245690 -84278888 + AluSx SINE Alu 1 305 -7 432 0 0 0 chr3 143245976 143246024 -84278554 + (CAT)n Simple_repeat Simple_repeat 3 50 0 734 145 89 8 chr3 143246134 143246258 -84278320 + THE1B LTR MaLR 196 329 -35 2260 83 0 3 chr3 143246806 143247108 -84277470 - AluY SINE Alu -9 302 2 342 115 0 0 chr3 143247253 143247305 -84277273 + (GA)n Simple_repeat Simple_repeat 1 52 0 2064 123 3 0 chr3 143247620 143247912 -84276666 - AluSg SINE Alu -17 293 1 1135 167 14 28 chr3 143247977 143248193 -84276385 + MER73 LTR ERVL 432 644 0 242 264 0 113 chr3 143248681 143248738 -84275840 - MER5B DNA MER1_type -81 97 56 924 150 0 0 chr3 143248738 143248871 -84275707 + FLAM_A SINE Alu 1 133 0 242 264 0 113 chr3 143248871 143248919 -84275659 - MER5B DNA MER1_type -122 56 4 403 203 0 0 chr3 143248998 143249072 -84275506 - MER66B LTR ERV1 -412 74 1 860 138 0 8 chr3 143249434 143249564 -84275014 + FLAM_C SINE Alu 1 129 -4 1877 152 3 3 chr3 143249742 143250052 -84274526 - AluSx SINE Alu -2 310 1 419 251 22 95 chr3 143250760 143250898 -84273680 + MER5B DNA MER1_type 2 140 -49 1819 170 0 0 chr3 143250898 143251209 -84273369 - AluJo SINE Alu -1 311 1 419 251 22 95 chr3 143251209 143251256 -84273322 + MER5B DNA MER1_type 140 189 0 192 293 53 53 chr3 143251274 143251407 -84273171 + MER5B DNA MER1_type 7 139 -39 1317 232 106 21 chr3 143251822 143251894 -84272684 + MLT1C LTR MaLR 6 70 -397 1886 161 3 0 chr3 143251894 143252192 -84272386 + AluSx SINE Alu 1 299 -13 1317 232 106 21 chr3 143252192 143252542 -84272036 + MLT1C LTR MaLR 70 464 -3 2176 103 0 0 chr3 143252583 143252875 -84271703 + AluSp SINE Alu 1 292 -21 1462 133 26 113 chr3 143253094 143253439 -84271139 + AluYb8 SINE Alu 1 315 -3 308 191 16 16 chr3 143253620 143253683 -84270895 + AluJo SINE Alu 1 63 -239 3811 123 108 50 chr3 143253709 143254153 -84270425 + LTR1 LTR ERV1 1 507 -278 1861 52 0 4 chr3 143254153 143254383 -84270195 + AluY SINE Alu 16 244 -67 3811 123 108 50 chr3 143254383 143254680 -84269898 + LTR1 LTR ERV1 507 785 0 1395 148 0 79 chr3 143254683 143254973 -84269605 + AluJo SINE Alu 43 309 -3 183 358 30 0 chr3 143254980 143255047 -84269531 - MIR SINE MIR -119 89 21 1801 140 0 17 chr3 143255514 143255814 -84268764 + AluSx SINE Alu 1 295 -17 279 104 0 0 chr3 143255818 143255866 -84268712 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 1857 151 3 25 chr3 143256011 143256329 -84268249 - AluJo SINE Alu -1 311 1 527 266 82 13 chr3 143256851 143257009 -84267569 + MIR SINE MIR 79 247 -15 339 283 76 0 chr3 143257033 143257125 -84267453 + L2 LINE L2 3162 3260 -12 518 299 25 34 chr3 143257488 143257692 -84266886 + MIR SINE MIR 21 222 -40 2175 118 0 0 chr3 143257709 143258015 -84266563 + AluSq SINE Alu 1 306 -7 3248 123 68 8 chr3 143258102 143258599 -84265979 + MER1A DNA MER1_type 1 527 0 789 186 9 97 chr3 143258615 143258775 -84265803 + MER3 DNA MER1_type 4 140 -69 2095 119 3 0 chr3 143258775 143259070 -84265508 - AluSx SINE Alu -16 296 1 789 186 9 97 chr3 143259070 143259135 -84265443 + MER3 DNA MER1_type 140 209 0 791 265 94 8 chr3 143259284 143259518 -84265060 - MIR SINE MIR -6 256 3 273 29 0 0 chr3 143261510 143261544 -84263034 + (TG)n Simple_repeat Simple_repeat 1 34 0 2096 152 0 3 chr3 143262118 143262420 -84262158 + AluSg SINE Alu 1 301 -9 454 254 67 62 chr3 143262476 143262669 -84261909 - L2 LINE L2 0 3313 3120 900 198 90 0 chr3 143262794 143263006 -84261572 - LTR16A1 LTR ERVL 0 457 227 424 250 176 0 chr3 143263647 143263783 -84260795 - MIR SINE MIR -72 190 31 1577 159 67 25 chr3 143263788 143264071 -84260507 - AluJo SINE Alu -17 295 1 551 87 0 0 chr3 143264081 143264150 -84260428 - Alu SINE Alu -17 294 226 6700 59 12 0 chr3 143264150 143264926 -84259652 + LTR5 LTR ERVK 1 785 -184 46074 31 0 0 chr3 143264954 143270488 -84254090 + HERVK LTR ERVK 1 5534 -1709 14402 33 3 0 chr3 143270732 143272484 -84252094 + HERVK LTR ERVK 5533 7243 0 6636 64 12 0 chr3 143272484 143273260 -84251318 + LTR5 LTR ERVK 1 785 -184 411 304 19 34 chr3 143273476 143273683 -84250895 - MLT1K LTR MaLR -302 286 83 1102 107 0 0 chr3 143273861 143274001 -84250577 + AluSp/q SINE Alu 159 298 -15 1453 158 20 39 chr3 143274096 143274240 -84250338 + AluJo SINE Alu 1 139 -173 2011 167 0 0 chr3 143274240 143274540 -84250038 + AluSx SINE Alu 1 300 -12 1453 158 20 39 chr3 143274540 143274649 -84249929 + AluJo SINE Alu 139 249 -63 326 331 0 60 chr3 143274653 143274786 -84249792 - L1MC4 LINE L1 -1339 6703 6579 596 238 50 12 chr3 143274803 143274963 -84249615 + MER104 DNA Tc2 11 176 -4 1871 93 0 0 chr3 143275855 143276133 -84248445 + AluSx SINE Alu 60 337 0 1851 182 0 22 chr3 143276271 143276589 -84247989 + AluJo SINE Alu 1 311 -1 276 299 69 0 chr3 143276654 143276741 -84247837 - MIR SINE MIR -74 188 96 1589 167 0 16 chr3 143276761 143277013 -84247565 + AluJb SINE Alu 1 248 -64 2346 149 46 11 chr3 143277013 143277448 -84247130 + MER66B LTR ERV1 3 452 -34 4181 126 45 38 chr3 143277448 143278366 -84246212 + pTR5 LTR ERV1 742 1999 -439 350 271 9 0 chr3 143278366 143278473 -84246105 + LTR30 LTR ERV1 517 624 -98 1486 95 0 5 chr3 143278473 143278721 -84245857 + pTR5 LTR ERV1 49 397 -2041 1784 195 24 41 chr3 143278945 143279194 -84245384 + L1MB7 LINE L1 5670 5909 -275 333 0 0 0 chr3 143279194 143279231 -84245347 + (CA)n Simple_repeat Simple_repeat 2 38 0 1784 195 24 41 chr3 143279231 143279443 -84245135 + L1MB7 LINE L1 5909 6123 -61 1748 177 3 7 chr3 143279443 143279742 -84244836 - AluJb SINE Alu -14 298 1 959 143 0 0 chr3 143279865 143279998 -84244580 - FLAM_C SINE Alu -10 133 1 344 116 0 43 chr3 143279999 143280068 -84244510 + L1MB8 LINE L1 6112 6177 -1 1697 187 3 14 chr3 143280079 143280214 -84244364 + AluJb SINE Alu 1 136 -176 1935 108 66 28 chr3 143280214 143280502 -84244076 + AluSx SINE Alu 1 299 -13 1697 187 3 14 chr3 143280502 143280655 -84243923 + AluJb SINE Alu 136 286 -26 2279 87 0 7 chr3 143280792 143281103 -84243475 + AluSx SINE Alu 1 309 0 2118 127 7 10 chr3 143281718 143282026 -84242552 - AluSx SINE Alu 0 312 6 1462 167 52 75 chr3 143282227 143282533 -84242045 + AluJo SINE Alu 1 299 -13 632 228 114 46 chr3 143282696 143282915 -84241663 + MIR SINE MIR 29 262 0 1452 167 126 4 chr3 143284025 143284294 -84240284 + AluJo SINE Alu 1 302 0 549 162 86 8 chr3 143285031 143285148 -84239430 + MER45A DNA AcHobo 1 126 -52 1603 150 66 7 chr3 143285149 143285422 -84239156 + AluJo SINE Alu 1 289 -23 2299 117 0 0 chr3 143285429 143285738 -84238840 + AluSq SINE Alu 1 309 -4 1314 180 35 80 chr3 143285764 143286010 -84238568 - MLT1C LTR MaLR -45 422 199 2130 121 3 7 chr3 143286010 143286308 -84238270 - AluSx SINE Alu -15 297 1 1314 180 35 80 chr3 143286308 143286461 -84238117 - MLT1C LTR MaLR -268 199 41 1498 196 36 0 chr3 143286481 143286761 -84237817 - AluJo SINE Alu -22 290 1 2184 94 10 3 chr3 143287420 143287708 -84236870 + AluSc SINE Alu 1 290 -19 2417 80 6 6 chr3 143287802 143288113 -84236465 + AluSq SINE Alu 1 311 -2 365 280 88 50 chr3 143289165 143289347 -84235231 + L2 LINE L2 3122 3310 -3 212 251 6 103 chr3 143290332 143290507 -84234071 + C-rich Low_complexity Low_complexity 3 160 0 221 83 42 83 chr3 143291539 143291587 -84232991 - MIR SINE MIR -85 177 132 891 234 65 0 chr3 143291608 143291822 -84232756 + MIR SINE MIR 13 240 -22 743 231 93 55 chr3 143291843 143291948 -84232630 - L2 LINE L2 -1 3271 3171 183 80 0 0 chr3 143291948 143291973 -84232605 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 743 231 93 55 chr3 143291973 143292326 -84232252 - L2 LINE L2 -101 3171 2777 183 250 71 18 chr3 143292302 143292358 -84232220 - MIR SINE MIR -67 141 83 * 2163 128 0 0 chr3 143293768 143294065 -84230513 + AluSx SINE Alu 1 297 -15 342 267 179 19 chr3 143295014 143295332 -84229246 + LTR33A LTR ERVL 139 507 -16 2062 137 10 0 chr3 143295344 143295650 -84228928 - AluSx SINE Alu -3 309 1 729 157 50 8 chr3 143296148 143296269 -84228309 - FLAM_A SINE Alu -7 126 1 302 268 74 63 chr3 143296559 143296713 -84227865 + MIR SINE MIR 26 177 -68 2340 101 0 0 chr3 143296793 143297090 -84227488 + AluSq SINE Alu 4 300 -13 937 155 77 0 chr3 143297090 143297245 -84227333 + AluSg/x SINE Alu 134 300 -12 513 323 45 0 chr3 143297302 143297500 -84227078 - L1MD2 LINE L1 -351 6008 5802 295 199 153 38 chr3 143299234 143299365 -84225213 + MIR SINE MIR 9 154 -54 304 269 145 7 chr3 143299503 143299648 -84224930 - MIR SINE MIR -17 245 81 2095 136 3 0 chr3 143299921 143300229 -84224349 + AluJb SINE Alu 1 309 -3 761 227 27 8 chr3 143300449 143300709 -84223869 - L1M4c LINE L1 -5142 1242 978 671 209 99 0 chr3 143300815 143301016 -84223562 - L1M4 LINE L1 -797 5349 5129 314 175 38 50 chr3 143301016 143301096 -84223482 + Charlie5 DNA MER1_type 2501 2579 -33 275 212 51 82 chr3 143301101 143301160 -84223418 - L1MC5 LINE L1 -547 7495 7436 1521 154 77 15 chr3 143301160 143301432 -84223146 + AluJb SINE Alu 5 293 -19 275 212 51 82 chr3 143301432 143301653 -84222925 - L1MC5 LINE L1 -606 7436 7228 22 0 0 0 chr3 143302066 143302088 -84222490 + AT_rich Low_complexity Low_complexity 1 22 0 551 190 66 7 chr3 143302759 143302896 -84221682 + L1MB1 LINE L1 5012 5156 -990 592 225 22 7 chr3 143303421 143303559 -84221019 + L1MC4 LINE L1 6745 6884 -1158 * 4944 151 37 5 chr3 143303553 143304536 -84220042 + L1MB1 LINE L1 5146 6163 -5 4613 180 71 21 chr3 143304545 143305637 -84218941 + L1MC4 LINE L1 6859 8005 -37 2248 94 3 17 chr3 143305840 143306138 -84218440 + AluSp SINE Alu 1 294 -19 1373 144 48 0 chr3 143307060 143307310 -84217268 + L1MB3 LINE L1 5793 6054 -129 16428 124 19 101 chr3 143307337 143310937 -84213641 + L1P LINE L1 12 3314 -2832 432 90 179 0 chr3 143311088 143311155 -84213423 - MADE1 DNA Mariner 0 80 2 831 235 40 0 chr3 143312386 143312586 -84211992 - MER58A DNA MER1_type -16 208 1 1874 108 12 0 chr3 143314368 143314619 -84209959 + AluSq SINE Alu 1 254 -59 4031 254 103 3 chr3 143314727 143316140 -84208438 + L2 LINE L2 1746 3312 -1 2579 150 105 88 chr3 143316654 143317294 -84207284 - MLT1E1 LTR MaLR -3 651 1 411 271 178 0 chr3 143317659 143317777 -84206801 - MER91A DNA MER1_type 0 196 58 1072 190 4 35 chr3 143318354 143318580 -84205998 + MER20 DNA MER1_type 1 219 0 819 243 196 14 chr3 143318870 143319237 -84205341 + LTR33 LTR ERVL 87 520 -1 28 91 0 0 chr3 143323158 143323235 -84201343 + GC_rich Low_complexity Low_complexity 1 77 0 23 86 0 0 chr3 143323296 143323354 -84201224 + GC_rich Low_complexity Low_complexity 1 58 0 2564 227 39 39 chr3 143323455 143323692 -84200886 + L1ME1 LINE L1 5357 5593 -573 2153 120 0 0 chr3 143323692 143324004 -84200574 - AluSq SINE Alu 0 312 1 2564 227 39 39 chr3 143324004 143324539 -84200039 + L1ME1 LINE L1 5592 6130 -36 193 224 69 52 chr3 143324570 143324628 -84199950 - L2 LINE L2 -382 2931 2873 362 299 142 81 chr3 143324904 143325574 -84199004 + L1ME4a LINE L1 5476 6036 -85 2115 191 40 52 chr3 143325631 143326135 -84198443 - MLT1D LTR MaLR -7 498 1 183 290 32 16 chr3 143326215 143326277 -84198301 - L2 LINE L2 -15 3298 3236 466 270 196 0 chr3 143326450 143326598 -84197980 - MER5A DNA MER1_type 0 189 13 380 256 51 80 chr3 143328273 143328410 -84196168 - MIR3 SINE MIR -65 143 11 2553 71 0 0 chr3 143328671 143328982 -84195596 - AluY SINE Alu 0 311 1 459 331 46 0 chr3 143329962 143330137 -84194441 - MIR SINE MIR -52 210 28 230 178 0 22 chr3 143330243 143330288 -84194290 + L2 LINE L2 3265 3308 -5 311 200 67 22 chr3 143331140 143331230 -84193348 - L1ME4a LINE L1 -175 5946 5853 338 256 40 32 chr3 143331388 143331513 -84193065 + L1ME4a LINE L1 5996 6121 0 197 277 48 84 chr3 143331582 143331665 -84192913 + MIR SINE MIR 93 172 -90 632 188 49 10 chr3 143331945 143332156 -84192422 - ORSL DNA AcHobo 0 275 1 6928 45 34 6 chr3 143332413 143333309 -84191269 - L1PA7 LINE L1 -8 6146 5224 28 29 0 0 chr3 143333573 143333608 -84190970 + GC_rich Low_complexity Low_complexity 1 35 0 288 176 0 134 chr3 143333723 143333865 -84190713 + L1MC5 LINE L1 7638 7760 -201 275 288 106 45 chr3 143333996 143334128 -84190450 - MIR SINE MIR -75 187 48 804 287 24 0 chr3 143334342 143334551 -84190027 + MIR SINE MIR 6 219 -43 41268 35 21 2 chr3 143335504 143341535 -84183043 - L1PA2 LINE L1 -1 6154 2 605 268 39 25 chr3 143342171 143342399 -84182179 + L1ME1 LINE L1 5923 6162 -2 893 221 72 0 chr3 143343828 143344036 -84180542 + MER58A DNA MER1_type 1 223 -1 268 347 0 0 chr3 143344229 143344301 -84180277 + L2 LINE L2 3149 3220 -52 1964 133 35 0 chr3 143345132 143345418 -84179160 + AluSx SINE Alu 5 300 -12 381 320 10 0 chr3 143345905 143346005 -84178573 - L1M3d LINE L1 -5108 783 683 298 274 32 48 chr3 143345973 143346097 -84178481 - L1M3d LINE L1 -5721 251 130 * 186 311 93 53 chr3 143346098 143346249 -84178329 + L2 LINE L2 2898 3054 -259 183 80 0 0 chr3 143346351 143346376 -84178202 + (TTTC)n Simple_repeat Simple_repeat 4 28 0 284 258 42 25 chr3 143346515 143346635 -84177943 - L1M3d LINE L1 -5769 122 1 596 317 67 26 chr3 143346637 143347202 -84177376 - HAL1 LINE L1 -758 1749 1162 356 210 126 25 chr3 143348086 143348205 -84176373 + L1MC3 LINE L1 6505 6635 -1150 * 1369 233 103 8 chr3 143348167 143348554 -84176024 - L1MD3 LINE L1 -952 7043 6620 367 260 58 0 chr3 143348551 143348655 -84175923 + L1MD3 LINE L1 7169 7278 -717 * 442 187 65 16 chr3 143348656 143348779 -84175799 + MLT1F1 LTR MaLR 3 131 -436 1286 231 166 3 chr3 143348782 143349168 -84175410 + L1MD3 LINE L1 7410 7858 -137 2605 139 44 2 chr3 143349174 143349583 -84174995 - MSTB LTR MaLR 0 426 1 7643 184 50 4 chr3 143349583 143351071 -84173507 - MSTB-int LTR MaLR 0 1651 95 1904 142 46 0 chr3 143351071 143351396 -84173182 - MSTB LTR MaLR -84 342 3 461 196 47 0 chr3 143351410 143351517 -84173061 + L1MD3 LINE L1 7874 7985 -10 825 264 106 50 chr3 143351686 143352122 -84172456 - LTR33 LTR ERVL -7 514 55 493 249 129 27 chr3 143352557 143352872 -84171706 + MER31B LTR ERV1 2 390 -76 220 360 136 4 chr3 143353060 143353296 -84171282 + L2 LINE L2 638 904 -2410 302 327 50 0 chr3 143353468 143353569 -84171009 + MER91B DNA MER1_type 75 180 -10 274 253 13 0 chr3 143354359 143354434 -84170144 + (TG)n Simple_repeat Simple_repeat 1 76 0 292 296 66 20 chr3 143355624 143355776 -84168802 + L2 LINE L2 2257 2415 -899 189 228 70 0 chr3 143356661 143356718 -84167860 - L2 LINE L2 0 3272 3212 21 57 0 0 chr3 143357106 143357141 -84167437 + AT_rich Low_complexity Low_complexity 1 35 0 270 305 0 0 chr3 143357483 143357601 -84166977 + (TCCA)n Simple_repeat Simple_repeat 1 118 0 233 330 22 11 chr3 143357615 143357706 -84166872 - L2 LINE L2 0 3272 3181 364 288 34 34 chr3 143357737 143357883 -84166695 - L1MC/D LINE L1 -2349 5459 5314 221 57 57 19 chr3 143357928 143357981 -84166597 + (TA)n Simple_repeat Simple_repeat 1 55 0 259 115 64 26 chr3 143358085 143358163 -84166415 + (TTATA)n Simple_repeat Simple_repeat 4 84 0 458 289 102 19 chr3 143358349 143358615 -84165963 - L1MC/D LINE L1 -1300 4846 4559 2513 151 42 2 chr3 143358642 143359052 -84165526 - MSTA LTR MaLR 0 428 3 9958 161 23 3 chr3 143359054 143360673 -84163905 - MSTA-int LTR MaLR 0 1651 1 2386 120 39 68 chr3 143360673 143361114 -84163464 - MSTA LTR MaLR 0 428 1 701 205 115 14 chr3 143362435 143362723 -84161855 - MLT1A1 LTR MaLR -53 321 1 257 197 49 0 chr3 143363051 143363112 -84161466 - L2 LINE L2 -21 3251 3188 199 323 138 23 chr3 143363301 143363431 -84161147 + L2 LINE L2 3127 3271 -1 336 158 13 53 chr3 143363945 143364021 -84160557 - MIR3 SINE MIR -32 176 104 361 285 141 11 chr3 143364624 143364894 -84159684 + LTR16B LTR ERVL 146 450 -14 1754 146 177 9 chr3 143365554 143365904 -84158674 + MSTC LTR MaLR 1 409 -19 398 286 152 6 chr3 143366032 143366203 -84158375 - MER50 LTR ERV1 -48 686 491 1536 126 57 13 chr3 143366203 143366504 -84158074 + LTR23 LTR ERV1 86 399 -38 392 246 127 0 chr3 143366508 143366618 -84157960 + MER50 LTR ERV1 4 127 -607 * 1043 262 102 25 chr3 143366614 143367015 -84157563 + MER50 LTR ERV1 26 457 -277 2534 57 7 0 chr3 143367043 143367343 -84157235 + AluY SINE Alu 1 302 -9 1451 137 100 52 chr3 143367376 143367705 -84156873 - MER4B LTR ERV1 -264 346 2 3377 243 94 25 chr3 143367722 143368826 -84155752 + MSTC-int LTR MaLR 471 1651 0 2724 107 38 24 chr3 143368826 143369248 -84155330 + MSTC LTR MaLR 1 428 0 196 333 39 0 chr3 143370974 143371052 -84153526 + MIR SINE MIR 169 249 -13 403 353 56 16 chr3 143373750 143374002 -84150576 - MER102a DNA MER1_type -3 327 66 2295 116 0 10 chr3 143374699 143375000 -84149578 - AluSx SINE Alu -14 298 1 184 352 133 43 chr3 143375236 143375469 -84149109 - L2 LINE L2 -5 3267 3014 606 280 122 30 chr3 143375834 143376321 -84148257 - L2 LINE L2 0 3272 2735 4223 223 103 29 chr3 143376436 143377799 -84146779 - L1MDa LINE L1 -4623 1917 265 2249 98 7 0 chr3 143377799 143378086 -84146492 - AluSx SINE Alu -23 289 1 4223 223 103 29 chr3 143378086 143378346 -84146232 - L1MDa LINE L1 -6275 265 26 557 259 149 45 chr3 143379018 143379307 -84145271 + L2 LINE L2 2995 3313 0 366 116 58 35 chr3 143379768 143379940 -84144638 + (CACAC)n Simple_repeat Simple_repeat 5 180 0 183 120 180 0 chr3 143380585 143380635 -84143943 + L3 LINE CR1 1190 1248 -329 662 228 32 37 chr3 143382004 143382193 -84142385 + MER5A DNA MER1_type 1 188 -1 287 254 132 0 chr3 143382360 143382474 -84142104 - LTR33 LTR ERVL -13 508 380 1016 232 42 8 chr3 143382548 143382789 -84141789 - LTR33 LTR ERVL -272 249 1 299 300 100 42 chr3 143382790 143382910 -84141668 - L2 LINE L2 -35 3237 3111 453 321 105 0 chr3 143382959 143383168 -84141410 - MIR SINE MIR 0 262 32 6699 170 191 30 chr3 143383208 143384720 -84139858 - MER52A LTR ERV1 0 1755 1 1469 138 78 18 chr3 143384721 143385003 -84139575 - MER52A-int LTR ERV1 -1 5216 4918 1297 142 8 57 chr3 143385008 143385255 -84139323 - MER52A-int LTR ERV1 -1226 3991 3757 2145 49 0 0 chr3 143386201 143386466 -84138112 - L1PA6 LINE L1 -1 6153 5889 11811 88 9 2 chr3 143386468 143388191 -84136387 - L1P LINE L1 -865 5281 3547 751 245 72 46 chr3 143388317 143388554 -84136024 + MIR SINE MIR 20 262 0 1994 97 0 8 chr3 143389923 143390191 -84134387 - AluSx SINE Alu -46 266 1 479 206 221 47 chr3 143390477 143390821 -84133757 - L1ME4a LINE L1 -21 6100 5697 274 317 85 12 chr3 143390928 143391092 -84133486 - L2 LINE L2 -466 2848 2673 953 211 138 20 chr3 143391092 143391396 -84133182 + MER58B DNA MER1_type 1 340 -1 296 301 97 0 chr3 143391617 143391730 -84132848 + LTR33 LTR ERVL 296 419 -102 256 346 42 65 chr3 143391834 143392218 -84132360 - L2 LINE L2 -710 2604 2230 460 269 65 21 chr3 143392306 143392492 -84132086 + L2 LINE L2 3120 3313 0 1164 208 62 50 chr3 143393868 143394190 -84130388 + LTR16C LTR ERVL 150 475 -16 432 208 229 31 chr3 143394245 143394437 -84130141 + MIR SINE MIR 32 261 -1 554 50 0 25 chr3 143395168 143395248 -84129330 + L1PA5 LINE L1 6077 6154 0 198 330 119 17 chr3 143395780 143395898 -84128680 + L2 LINE L2 3123 3252 -20 425 132 0 0 chr3 143395904 143395972 -84128606 + MER53 DNA DNA 122 189 0 191 113 19 132 chr3 143395976 143396029 -84128549 + L2 LINE L2 3267 3313 0 1511 161 121 11 chr3 143396611 143396884 -84127694 - AluSx SINE Alu -9 303 1 733 243 0 7 chr3 143396953 143397105 -84127473 - MER5A DNA MER1_type -9 180 30 213 175 0 0 chr3 143397147 143397187 -84127391 + CT-rich Low_complexity Low_complexity 4 43 0 37 52 0 0 chr3 143398598 143398656 -84125922 + AT_rich Low_complexity Low_complexity 1 58 0 186 43 0 0 chr3 143398995 143399018 -84125560 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1427 157 154 43 chr3 143399071 143399422 -84125156 + MLT1B LTR MaLR 1 390 0 24 32 0 0 chr3 143399497 143399528 -84125050 + AT_rich Low_complexity Low_complexity 1 31 0 1849 148 106 3 chr3 143400106 143400437 -84124141 - MLT1A1 LTR MaLR 0 365 1 275 307 13 0 chr3 143400693 143400768 -84123810 - MIR3 SINE MIR -5 203 128 207 354 62 44 chr3 143403070 143403183 -84121395 - MIR SINE MIR -62 146 32 654 228 19 13 chr3 143404623 143404781 -84119797 + FRAM SINE Alu 3 161 -5 249 280 130 20 chr3 143407777 143407877 -84116701 - L3 LINE CR1 -88 1489 1379 606 296 72 50 chr3 143408419 143408963 -84115615 + L1MEd LINE L1 27 582 -5537 281 70 0 0 chr3 143409119 143409162 -84115416 - LTR5 LTR ERVK -164 805 763 362 300 209 25 chr3 143409481 143409758 -84114820 + L2 LINE L2 2942 3269 -3 1110 231 23 23 chr3 143410915 143411171 -84113407 - MIR SINE MIR 0 262 7 258 313 125 34 chr3 143411237 143411445 -84113133 - MIR SINE MIR -10 252 26 1827 169 11 4 chr3 143411448 143411762 -84112816 - AluJb SINE Alu 0 316 1 1670 181 16 14 chr3 143612798 143613169 -83911409 + L1MD1 LINE L1 5864 6235 -7 402 260 30 6 chr3 143613178 143613347 -83911231 + HAL1 LINE L1 1075 1247 -1260 406 278 113 17 chr3 143613485 143613715 -83910863 + HAL1 LINE L1 419 670 -1837 993 274 111 0 chr3 143613807 143614187 -83910391 - L1ME3A LINE L1 -38 6132 5711 396 194 82 10 chr3 143614198 143614296 -83910282 + HAL1 LINE L1 797 901 -1606 1122 251 153 45 chr3 143614320 143614986 -83909592 + HAL1 LINE L1 973 1710 -797 241 250 79 0 chr3 143615101 143615177 -83909401 + LTR45 LTR ERV1 444 525 0 2016 188 15 26 chr3 143615342 143615805 -83908773 + pTR5 LTR ERV1 741 1198 -1240 24 32 0 0 chr3 143615926 143615957 -83908621 + GC_rich Low_complexity Low_complexity 1 31 0 211 208 0 21 chr3 143616053 143616101 -83908477 + G-rich Low_complexity Low_complexity 6 52 0 207 245 5 94 chr3 143616061 143616253 -83908325 + (CGGGG)n Simple_repeat Simple_repeat 4 178 0 * 4939 81 68 28 chr3 143616352 143617151 -83907427 + pTR5 LTR ERV1 1195 2025 -413 261 272 0 0 chr3 143617151 143617232 -83907346 + LTR30 LTR ERV1 544 624 -98 1366 93 0 32 chr3 143617232 143617480 -83907098 + pTR5 LTR ERV1 172 2220 -218 681 333 43 34 chr3 143617531 143617969 -83906609 + HAL1 LINE L1 2064 2505 -2 676 326 158 0 chr3 143617969 143618254 -83906324 + L1M4 LINE L1 2777 3106 -3040 1046 215 169 10 chr3 143618386 143618729 -83905849 + MLT1F LTR MaLR 178 542 0 376 217 47 19 chr3 143619035 143619141 -83905437 + LTR67 LTR ERVL 449 557 0 356 281 10 0 chr3 143620650 143620746 -83903832 - MLT1H LTR MaLR -378 171 75 413 331 216 4 chr3 143621165 143621410 -83903168 - L2 LINE L2 0 3313 3017 436 297 43 35 chr3 143622649 143622924 -83901654 + L1MEc LINE L1 1409 1713 -863 3569 213 36 6 chr3 143623518 143624487 -83900091 + L1MB7 LINE L1 5172 6174 -10 1179 112 6 6 chr3 143624507 143624676 -83899902 + AluSp SINE Alu 1 169 -144 4574 125 15 124 chr3 143624676 143626223 -83898355 - pTR5 LTR ERV1 0 2606 1524 954 108 0 20 chr3 143626223 143626390 -83898188 + AluSg/x SINE Alu 164 310 0 819 198 165 0 chr3 143626576 143626824 -83897754 - MER33 DNA MER1_type -2 322 34 676 221 0 27 chr3 143626957 143627327 -83897251 + CT-rich Low_complexity Low_complexity 1 360 0 2643 10 0 3 chr3 143627751 143628050 -83896528 + AluYa5 SINE Alu 1 298 -13 474 214 41 0 chr3 143628275 143628373 -83896205 - MER91C DNA MER1_type 0 140 39 272 260 16 4 chr3 143628889 143628963 -83895615 - MIR SINE MIR -61 147 84 579 256 39 69 chr3 143629590 143629895 -83894683 - MLT2D LTR ERVL -118 296 1 268 280 53 58 chr3 143630247 143630436 -83894142 - MER113 DNA MER1_type? -245 276 89 2562 198 58 16 chr3 143631540 143631842 -83892736 - L1MB3 LINE L1 -3 6180 5879 739 341 28 6 chr3 143631842 143632203 -83892375 - L1PB4 LINE L1 -295 5861 5493 911 277 121 26 chr3 143632208 143632631 -83891947 + MLT1K LTR MaLR 103 565 -23 340 297 31 8 chr3 143632984 143633112 -83891466 + MIR SINE MIR 34 164 -98 303 295 93 22 chr3 143634444 143634583 -83889995 + MIR SINE MIR 67 215 -47 280 311 136 15 chr3 143635057 143635189 -83889389 + MER5B DNA MER1_type 23 170 -8 207 182 0 0 chr3 143637465 143637498 -83887080 + (CATATA)n Simple_repeat Simple_repeat 6 38 0 233 316 154 0 chr3 143640812 143640929 -83883649 - MER3 DNA MER1_type -60 149 15 330 350 64 39 chr3 143644875 143645109 -83879469 + L1M4 LINE L1 3606 3845 -2301 230 302 179 0 chr3 143645486 143645592 -83878986 + L2 LINE L2 2921 3045 -268 293 291 10 19 chr3 143646282 143646385 -83878193 - MIR SINE MIR -139 123 22 819 181 18 0 chr3 143646845 143647011 -83877567 - L1MB3 LINE L1 -317 5866 5698 * 1378 181 44 3 chr3 143646979 143647277 -83877301 + L1MB3 LINE L1 5865 6174 -9 2641 196 19 11 chr3 143647300 143647820 -83876758 + L1MC1 LINE L1 5810 6333 0 215 283 17 0 chr3 143648712 143648772 -83875806 - MIR SINE MIR -12 250 190 203 271 51 0 chr3 143649112 143649171 -83875407 - MIR SINE MIR -200 62 1 255 356 60 13 chr3 143651127 143651276 -83873302 - MIR SINE MIR -104 158 3 372 377 36 0 chr3 143652598 143652736 -83871842 + MIR SINE MIR 54 196 -66 292 284 0 0 chr3 143653379 143653453 -83871125 + MER81 DNA DNA 20 93 -21 387 340 90 0 chr3 143653823 143653967 -83870611 - MIR SINE MIR -81 181 25 201 74 0 0 chr3 143658039 143658066 -83866512 + (CCCCG)n Simple_repeat Simple_repeat 5 31 0 752 240 28 23 chr3 143662286 143662503 -83862075 - ERVL LTR ERVL -3635 2129 1912 * 905 234 44 0 chr3 143662502 143662728 -83861850 - ERVL LTR ERVL -3761 2003 1768 321 302 107 10 chr3 143665020 143665225 -83859353 + L2 LINE L2 2923 3147 -166 276 296 53 23 chr3 143665227 143665359 -83859219 + MER3 DNA MER1_type 72 207 -2 324 0 0 0 chr3 143669543 143669579 -83854999 + (CCCCAG)n Simple_repeat Simple_repeat 1 36 0 184 154 0 51 chr3 143670885 143670924 -83853654 + MIR SINE MIR 156 192 -70 233 306 35 0 chr3 143678688 143678773 -83845805 - MIR SINE MIR -116 146 59 367 220 34 0 chr3 143682491 143682585 -83841993 + MIR SINE MIR 50 149 -62 195 303 45 0 chr3 143682700 143682766 -83841812 + MIR SINE MIR 1 69 -193 270 56 0 0 chr3 143684060 143684096 -83840482 + (CAG)n Simple_repeat Simple_repeat 3 38 0 258 374 53 8 chr3 143685447 143685578 -83839000 + MIR SINE MIR 33 169 -93 267 267 53 0 chr3 143685799 143685874 -83838704 - MIR SINE MIR -62 146 68 284 269 71 64 chr3 143686018 143686159 -83838419 + L2 LINE L2 3172 3313 0 41 66 0 0 chr3 143689044 143689120 -83835458 + GC_rich Low_complexity Low_complexity 1 76 0 224 117 0 104 chr3 143689329 143689406 -83835172 + (CCCCG)n Simple_repeat Simple_repeat 3 71 0 21 0 0 0 chr3 143689429 143689450 -83835128 + GC_rich Low_complexity Low_complexity 1 21 0 181 67 33 67 chr3 143689450 143689510 -83835068 + (CCG)n Simple_repeat Simple_repeat 3 60 0 21 57 0 0 chr3 143689530 143689565 -83835013 + GC_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr3 143689644 143689673 -83834905 + GC_rich Low_complexity Low_complexity 1 29 0 182 62 31 0 chr3 143689690 143689722 -83834856 + (CGGGGG)n Simple_repeat Simple_repeat 1 33 0 21 0 0 0 chr3 143689813 143689834 -83834744 + GC_rich Low_complexity Low_complexity 1 21 0 797 249 107 72 chr3 143690847 143691166 -83833412 - L1ME LINE L1 -389 5773 5467 1751 169 16 13 chr3 143691166 143691473 -83833105 - AluJo SINE Alu -4 308 1 1747 113 78 0 chr3 143691478 143691734 -83832844 - AluSx SINE Alu -36 276 1 797 249 107 72 chr3 143691734 143691781 -83832797 - L1ME LINE L1 -698 5464 5388 291 319 130 32 chr3 143691790 143691975 -83832603 - MIR SINE MIR -57 205 3 267 273 153 27 chr3 143692020 143692170 -83832408 + MIR SINE MIR 25 193 -69 225 323 173 26 chr3 143692333 143692674 -83831904 + L2 LINE L2 2250 2640 -674 600 308 14 7 chr3 143692802 143693081 -83831497 + L1M4 LINE L1 5023 5303 -843 492 278 0 0 chr3 143694040 143694441 -83830137 + (CA)n Simple_repeat Simple_repeat 1 401 0 281 346 92 13 chr3 143694794 143694947 -83829631 - L2 LINE L2 -556 2758 2594 245 203 85 0 chr3 143695095 143695154 -83829424 - MLT1K LTR MaLR -20 568 505 357 258 21 10 chr3 143695266 143695363 -83829215 - MLT1K LTR MaLR -298 290 193 255 333 56 14 chr3 143695614 143695758 -83828820 - MIR SINE MIR -78 184 35 868 128 8 15 chr3 143695996 143696129 -83828449 - FLAM_C SINE Alu -1 132 1 229 229 14 57 chr3 143696412 143696482 -83828096 - Charlie8 DNA MER1_type -991 1426 1360 5086 194 83 25 chr3 143696884 143698451 -83826127 + L1MDa LINE L1 906 2563 -3977 713 269 90 5 chr3 143698440 143698652 -83825926 + L1MD2 LINE L1 5909 6138 -221 * 520 234 25 19 chr3 143698661 143698819 -83825759 + L1MD2 LINE L1 6199 6357 -2 202 346 25 0 chr3 143699017 143699098 -83825480 + L2 LINE L2 3003 3085 -228 407 285 107 30 chr3 143699248 143699558 -83825020 - MLT1G LTR MaLR -7 583 204 184 325 65 13 chr3 143700267 143700344 -83824234 - MIR SINE MIR -99 163 83 739 217 0 0 chr3 143701049 143701178 -83823400 + FLAM_A SINE Alu 1 129 -4 344 209 165 0 chr3 143701308 143701399 -83823179 - MLT1K LTR MaLR -108 480 375 25 51 0 0 chr3 143701613 143701652 -83822926 + AT_rich Low_complexity Low_complexity 1 39 0 258 271 17 0 chr3 143701868 143701927 -83822651 + polypyrimidine Low_complexity Low_complexity 4 63 0 373 241 193 39 chr3 143701933 143702140 -83822438 - L1ME3 LINE L1 -19 6143 5905 521 272 284 5 chr3 143702181 143702597 -83821981 + MLT1E3 LTR MaLR 62 624 0 1389 281 34 25 chr3 143702601 143702648 -83821930 - L1ME3 LINE L1 -258 5904 5858 318 331 87 41 chr3 143702648 143703186 -83821392 - L1PA8 LINE L1 -314 5858 5296 265 257 27 0 chr3 143703286 143703360 -83821218 + MLT1E1 LTR MaLR 500 575 -79 264 305 130 0 chr3 143703399 143703530 -83821048 + MLT1K LTR MaLR 415 562 -26 224 327 109 18 chr3 143703954 143704119 -83820459 + L2 LINE L2 3073 3252 -61 390 282 88 37 chr3 143704493 143704844 -83819734 - L1ME4a LINE L1 -42 6079 5711 911 176 0 0 chr3 143704845 143704998 -83819580 + FRAM SINE Alu 9 161 -15 1891 147 68 34 chr3 143705085 143705411 -83819167 + MER1B DNA MER1_type 1 337 0 220 266 63 13 chr3 143705881 143705960 -83818618 - MIR SINE MIR -91 171 89 225 229 16 0 chr3 143706069 143706130 -83818448 - L1ME4a LINE L1 -456 5665 5604 805 274 45 24 chr3 143706133 143706465 -83818113 - L1ME4a LINE L1 -3600 2546 2208 847 258 47 27 chr3 143706994 143707250 -83817328 + MIR SINE MIR 1 261 -1 558 258 131 3 chr3 143707502 143707846 -83816732 + LTR33A LTR ERVL 111 523 0 324 376 6 6 chr3 143708217 143708437 -83816141 + (CA)n Simple_repeat Simple_repeat 1 220 0 421 237 260 11 chr3 143709149 143709326 -83815252 - MLT1K LTR MaLR -22 566 346 275 303 69 55 chr3 143709439 143709584 -83814994 - MIR SINE MIR -91 171 25 415 212 4 16 chr3 143710797 143710906 -83813672 + MLT1H LTR MaLR 458 549 0 225 0 0 0 chr3 143712141 143712166 -83812412 + (CTG)n Simple_repeat Simple_repeat 3 27 0 348 263 109 64 chr3 143715796 143715952 -83808626 - L1ME4a LINE L1 0 6121 5959 252 0 0 0 chr3 143716088 143716116 -83808462 + (TC)n Simple_repeat Simple_repeat 1 28 0 212 257 152 38 chr3 143716210 143716315 -83808263 - MIR SINE MIR -87 175 59 266 324 48 14 chr3 143716927 143717072 -83807506 - MLT1L LTR MaLR -368 247 98 239 329 0 0 chr3 143719046 143719119 -83805459 + MIR SINE MIR 97 169 -93 211 320 26 13 chr3 143719496 143719574 -83805004 + MIR SINE MIR 12 90 -172 1855 134 102 6 chr3 143721368 143721710 -83802868 - THE1C LTR MaLR 0 375 1 2039 130 10 3 chr3 143721967 143722260 -83802318 + AluSx SINE Alu 1 295 -17 244 303 106 42 chr3 143723883 143724025 -83800553 + MLT1K LTR MaLR 423 573 -15 1213 244 64 55 chr3 143724083 143724538 -83800040 + MLT1C LTR MaLR 2 460 -7 287 282 58 32 chr3 143725064 143725220 -83799358 - MIR SINE MIR -82 180 21 633 192 58 6 chr3 143728630 143728786 -83795792 - L1M4 LINE L1 -1002 5144 4981 3160 264 126 37 chr3 143729643 143731095 -83793483 + L1MC4 LINE L1 6460 8040 -2 21 0 0 0 chr3 143731289 143731310 -83793268 + AT_rich Low_complexity Low_complexity 1 21 0 340 291 97 81 chr3 143731776 143732397 -83792181 + L1MC4a LINE L1 5255 5885 -1923 301 181 0 96 chr3 143732512 143732595 -83791983 + L1ME4a LINE L1 6047 6121 0 230 274 0 0 chr3 143732987 143733049 -83791529 + MARNA DNA Mariner 514 575 -11 183 100 0 0 chr3 143733208 143733238 -83791340 + (CA)n Simple_repeat Simple_repeat 1 30 0 379 252 79 39 chr3 143733249 143733376 -83791202 + L3 LINE CR1 766 897 -680 334 280 53 23 chr3 143733381 143733513 -83791065 + L2 LINE L2 2686 2821 -493 369 313 17 11 chr3 143733545 143733703 -83790875 + MIR SINE MIR 28 186 -22 338 348 62 11 chr3 143734219 143734468 -83790110 - MIR SINE MIR 0 262 1 263 289 41 0 chr3 143735097 143735195 -83789383 - MIR SINE MIR -67 141 82 351 289 78 28 chr3 143735478 143735620 -83788958 + MIR SINE MIR 4 152 -110 1049 189 129 0 chr3 143735783 143735862 -83788716 - MER33 DNA MER1_type -2262 323 256 2111 131 7 3 chr3 143735862 143736160 -83788418 + AluSx SINE Alu 1 299 -13 1049 189 129 0 chr3 143736160 143736366 -83788212 - MER33 DNA MER1_type -2329 256 1 248 359 60 22 chr3 143736381 143736565 -83788013 - MIR SINE MIR -35 227 37 2688 51 0 3 chr3 143737868 143738180 -83786398 + AluY SINE Alu 1 311 0 2060 143 99 13 chr3 143738946 143739338 -83785240 + MSTB LTR MaLR 1 426 0 266 272 37 0 chr3 143739554 143739635 -83784943 - MIR3 SINE MIR -27 181 98 228 295 67 2 chr3 143740696 143740807 -83783771 + MIR SINE MIR 31 146 -62 192 282 48 48 chr3 143741755 143741879 -83782699 + L3 LINE CR1 1314 1437 -140 461 295 44 27 chr3 143741981 143742169 -83782409 - MIR SINE MIR -59 149 1 668 322 178 38 chr3 143742468 143742859 -83781719 + L3 LINE CR1 268 603 -974 2352 84 0 0 chr3 143742859 143743143 -83781435 + AluSx SINE Alu 9 292 -20 668 322 178 38 chr3 143743143 143743803 -83780775 + L3 LINE CR1 603 1466 -111 308 352 48 13 chr3 143745914 143746141 -83778437 + L2 LINE L2 2682 2916 -398 214 324 59 0 chr3 143746375 143746443 -83778135 - L2 LINE L2 -51 3262 3191 213 290 71 71 chr3 143747178 143747333 -83777245 - L3b LINE CR1 -94 1489 1335 198 211 35 18 chr3 143747439 143747496 -83777082 - L3b LINE CR1 -416 1167 1110 311 301 19 0 chr3 143748898 143749001 -83775577 - MIR SINE MIR 0 262 158 319 346 50 0 chr3 143749550 143749709 -83774869 + MER117 DNA MER1_type 1 167 -30 228 67 0 0 chr3 143749982 143750012 -83774566 + (CA)n Simple_repeat Simple_repeat 2 31 0 288 0 0 0 chr3 143750062 143750094 -83774484 + (CA)n Simple_repeat Simple_repeat 2 33 0 342 295 19 19 chr3 143750303 143750408 -83774170 - MIR SINE MIR -64 198 94 * 344 304 44 30 chr3 143750404 143750539 -83774039 + MIR SINE MIR 116 252 -10 1216 274 223 31 chr3 143752322 143753103 -83771475 + L1MEc LINE L1 790 1734 -4662 1869 182 10 3 chr3 143753103 143753411 -83771167 + AluJb SINE Alu 1 310 -2 1216 274 223 31 chr3 143753411 143753440 -83771138 + L1MEc LINE L1 1734 1756 -4640 1267 236 60 7 chr3 143753450 143753904 -83770674 + L1MEc LINE L1 2641 3118 -3097 699 331 137 7 chr3 143753933 143754376 -83770202 + L2 LINE L2 2774 3272 0 2182 169 3 8 chr3 143754719 143755086 -83769492 - MLT1A1 LTR MaLR 0 365 1 278 327 86 0 chr3 143755132 143755287 -83769291 - MIR3 SINE MIR -38 170 24 263 277 42 50 chr3 143755377 143755496 -83769082 + MIR SINE MIR 57 174 -88 2462 100 0 0 chr3 143756301 143756602 -83767976 - AluSx SINE Alu -10 302 2 1358 147 15 0 chr3 143756721 143756919 -83767659 + AluJb SINE Alu 87 287 -25 198 163 86 0 chr3 143757432 143757491 -83767087 + MIR SINE MIR 67 131 -77 1192 181 29 5 chr3 143758266 143758470 -83766108 + MER58A DNA MER1_type 1 209 -15 441 261 60 1 chr3 143758485 143758624 -83765954 - MIR3 SINE MIR -48 160 8 209 354 83 10 chr3 143758761 143758857 -83765721 + MIR SINE MIR 21 123 -139 2154 94 0 24 chr3 143759221 143759508 -83765070 + AluSq SINE Alu 34 313 0 194 256 0 0 chr3 143759525 143759568 -83765010 - MIR SINE MIR -103 159 117 387 279 106 0 chr3 143762006 143762167 -83762411 - L1MC/D LINE L1 -2036 5772 5595 1799 171 26 7 chr3 143762423 143762728 -83761850 - AluJb SINE Alu -1 311 1 624 320 36 20 chr3 143763726 143763973 -83760605 + MIR SINE MIR 2 252 -10 504 244 47 8 chr3 143764066 143764193 -83760385 + L2 LINE L2 3181 3312 -1 224 298 39 29 chr3 143764687 143764791 -83759787 - MIR SINE MIR -112 150 46 465 226 0 0 chr3 143815682 143816220 -83708358 + (TGG)n Simple_repeat Simple_repeat 1 538 0 558 193 0 0 chr3 143816225 143816386 -83708192 + GA-rich Low_complexity Low_complexity 1 161 0 513 212 0 0 chr3 143816384 143816563 -83708015 + (TGG)n Simple_repeat Simple_repeat 2 180 0 * 336 219 0 0 chr3 143816576 143816704 -83707874 + (TGG)n Simple_repeat Simple_repeat 2 129 0 308 215 127 0 chr3 143817581 143817660 -83706918 - MIR SINE MIR -169 93 5 22 0 0 0 chr3 143819124 143819146 -83705432 + AT_rich Low_complexity Low_complexity 1 22 0 736 208 63 63 chr3 143819662 143819946 -83704632 + L1ME3 LINE L1 2894 3177 -2969 2126 112 28 0 chr3 143819946 143820231 -83704347 + AluSp SINE Alu 1 293 -20 736 208 63 63 chr3 143820231 143820243 -83704335 + L1ME3 LINE L1 3177 3188 -2958 2361 99 3 0 chr3 143820243 143820545 -83704033 - AluSx SINE Alu -9 303 1 736 208 63 63 chr3 143820545 143820598 -83703980 + L1ME3 LINE L1 3187 3244 -2902 * 1421 235 136 37 chr3 143820576 143820724 -83703854 + L1ME3 LINE L1 3941 4073 -2073 1783 143 3 95 chr3 143820724 143821060 -83703518 - AluJo SINE Alu -7 305 1 1421 235 136 37 chr3 143821060 143821608 -83702970 + L1ME3 LINE L1 4073 4745 -1401 1619 194 32 0 chr3 143821608 143821731 -83702847 + AluJb SINE Alu 1 119 -193 189 0 0 0 chr3 143821731 143821752 -83702826 + (CAAAA)n Simple_repeat Simple_repeat 3 23 0 1619 194 32 0 chr3 143821752 143821911 -83702667 + AluJb SINE Alu 119 292 -20 1421 235 136 37 chr3 143821911 143822097 -83702481 + L1ME3 LINE L1 4745 4911 -1235 3276 194 50 39 chr3 143822169 143823231 -83701347 + L1MB7 LINE L1 4568 5647 -537 1761 111 24 20 chr3 143823231 143823483 -83701095 + AluSg SINE Alu 1 253 -57 3276 194 50 39 chr3 143823483 143823967 -83700611 + L1MB7 LINE L1 5647 6124 -60 887 268 48 37 chr3 143823943 143824589 -83699989 + L1ME3 LINE L1 5425 6136 -26 * 238 256 0 51 chr3 143824996 143825074 -83699504 - L2 LINE L2 -69 3244 3171 226 240 94 99 chr3 143825362 143825533 -83699045 - L2 LINE L2 -555 2759 2590 194 397 0 15 chr3 143828241 143828309 -83696269 + MIR SINE MIR 34 100 -108 376 279 18 18 chr3 143828855 143828966 -83695612 + MER5A DNA MER1_type 9 119 -70 2549 63 0 3 chr3 143829045 143829346 -83695232 - AluY SINE Alu -11 300 1 430 228 25 122 chr3 143829484 143829681 -83694897 - MER5B DNA MER1_type 0 178 1 547 314 16 58 chr3 143829684 143829926 -83694652 + MIR SINE MIR 19 250 -12 301 293 167 36 chr3 143830234 143830456 -83694122 + MLT1K LTR MaLR 21 271 -317 414 321 57 48 chr3 143830661 143830695 -83693883 - MIR SINE MIR -18 244 212 2361 134 57 41 chr3 143830695 143830877 -83693701 + MSTB LTR MaLR 1 178 -248 2381 93 3 0 chr3 143830877 143831178 -83693400 + AluSp SINE Alu 1 302 -11 2361 134 57 41 chr3 143831178 143831414 -83693164 + MSTB LTR MaLR 178 426 0 414 321 57 48 chr3 143831414 143831588 -83692990 - MIR SINE MIR -50 212 34 2824 56 0 0 chr3 143833777 143834149 -83690429 + L1PA5 LINE L1 5802 6173 0 258 253 0 25 chr3 143834711 143834790 -83689788 + GA-rich Low_complexity Low_complexity 3 79 0 371 333 102 40 chr3 143834860 143835388 -83689190 - L2 LINE L2 -337 2977 2417 3707 181 110 32 chr3 143835738 143836537 -83688041 - MER21B LTR ERV1 -2 861 1 224 339 98 9 chr3 143837229 143837341 -83687237 + MIR SINE MIR 122 243 -19 282 333 33 72 chr3 143837532 143837685 -83686893 - MIR SINE MIR -67 195 49 2016 110 31 27 chr3 143838111 143838403 -83686175 + AluSq SINE Alu 1 293 -20 199 344 82 67 chr3 143838583 143838778 -83685800 + L3 LINE CR1 38 235 -1342 519 293 112 4 chr3 143839321 143839570 -83685008 + Charlie8 DNA MER1_type 1 276 -2141 820 245 72 0 chr3 143840062 143840311 -83684267 - L1MD3 LINE L1 -6 7989 7723 734 205 202 39 chr3 143840389 143840696 -83683882 - HAL1 LINE L1 -106 2401 2045 378 208 39 54 chr3 143840694 143840797 -83683781 - HAL1 LINE L1 -932 1575 1473 * 8074 112 36 25 chr3 143840797 143841572 -83683006 + HSMAR2 DNA Mariner 2 798 -504 2193 118 17 7 chr3 143841572 143841868 -83682710 + AluSx SINE Alu 1 299 -13 8074 112 36 25 chr3 143841868 143842378 -83682200 + HSMAR2 DNA Mariner 798 1301 -1 378 208 39 54 chr3 143842378 143842404 -83682174 - HAL1 LINE L1 -1034 1473 1448 684 258 287 21 chr3 143842415 143842837 -83681741 + MLT1E LTR MaLR 14 547 -46 748 206 144 0 chr3 143842859 143843019 -83681559 + MER58A DNA MER1_type 42 224 0 354 123 18 0 chr3 143843019 143843074 -83681504 + MLT1F LTR MaLR 487 542 0 1312 242 100 19 chr3 143843074 143843595 -83680983 - HAL1 LINE L1 -1050 1457 895 26661 30 6 1 chr3 143843633 143847725 -83676853 - L1PA4 LINE L1 -3 6152 2042 330 300 89 16 chr3 143847826 143848016 -83676562 - MLT1K LTR MaLR -25 563 360 426 370 169 0 chr3 143848404 143848736 -83675842 - L3 LINE CR1 -829 748 361 451 186 14 89 chr3 143848871 143848956 -83675622 - L1MB5 LINE L1 -2 6176 6086 2268 94 0 7 chr3 143848956 143849244 -83675334 + AluSq SINE Alu 1 286 -27 243 0 0 0 chr3 143849244 143849271 -83675307 + (CTAAA)n Simple_repeat Simple_repeat 3 29 0 451 186 14 89 chr3 143849271 143849375 -83675203 - L1MB5 LINE L1 -90 6088 5997 516 286 60 16 chr3 143850065 143850250 -83674328 - MIR SINE MIR -45 217 25 405 273 124 8 chr3 143852501 143852622 -83671956 + MIR3 SINE MIR 68 202 -6 378 244 41 8 chr3 143852623 143852746 -83671832 + L1MC4a LINE L1 5800 5926 -1882 1902 109 40 14 chr3 143854529 143854871 -83669707 + AluSx SINE Alu 1 349 0 409 335 95 33 chr3 143855070 143855437 -83669141 + L3 LINE CR1 1155 1544 -33 503 322 110 43 chr3 143855967 143856763 -83667815 + L2 LINE L2 2430 3289 -24 222 317 73 24 chr3 143857064 143857187 -83667391 - MIR3 SINE MIR -1 207 79 606 274 92 63 chr3 143859432 143859922 -83664656 - MLT1J LTR MaLR -2 509 6 543 283 36 45 chr3 143860435 143860658 -83663920 - MIR SINE MIR -40 222 2 925 375 11 69 chr3 143861243 143861603 -83662975 - Tigger7 DNA MER2_type -394 339 1 24 53 0 0 chr3 143863397 143863435 -83661143 + AT_rich Low_complexity Low_complexity 1 38 0 3702 190 111 10 chr3 143864259 143865043 -83659535 - MER21B LTR ERV1 0 863 1 297 350 36 0 chr3 143865135 143865272 -83659306 + MIR SINE MIR 120 261 -1 1172 210 139 0 chr3 143865658 143865939 -83658639 + LTR32 LTR ERVL 14 333 -138 1066 254 129 37 chr3 143867852 143868418 -83656160 - L1MC4 LINE L1 0 8042 7425 1002 283 122 42 chr3 143868479 143869027 -83655551 + MLT1G1 LTR MaLR 3 594 -1 2012 261 104 29 chr3 143869045 143869923 -83654655 - L1MC4a LINE L1 -585 7223 6280 892 192 71 18 chr3 143869917 143870141 -83654437 - L1MD2 LINE L1 -2 6357 6122 * 501 228 68 27 chr3 143870168 143870254 -83654324 - L1MC4a LINE L1 -1542 6266 6185 2308 78 0 0 chr3 143870254 143870549 -83654029 - AluY SINE Alu -16 295 1 501 228 68 27 chr3 143870549 143870750 -83653828 - L1MC4a LINE L1 -1623 6185 5928 233 286 116 36 chr3 143872707 143872819 -83651759 - L2 LINE L2 -182 3090 2970 586 241 123 15 chr3 143873873 143874076 -83650502 + MIR SINE MIR 20 244 -18 354 267 180 0 chr3 143875260 143875410 -83649168 + MER5A DNA MER1_type 1 177 -12 548 233 9 0 chr3 143875451 143875567 -83649011 - FLAM_A SINE Alu -25 117 1 996 195 31 20 chr3 143875567 143875762 -83648816 - MER20 DNA MER1_type -20 199 3 2303 83 0 0 chr3 143875859 143876160 -83648418 + AluY SINE Alu 3 303 -8 256 301 0 27 chr3 143876915 143876988 -83647590 + L3 LINE CR1 190 260 -1317 243 310 71 9 chr3 143877090 143877203 -83647375 + L3 LINE CR1 796 915 -662 191 340 92 82 chr3 143877342 143877636 -83646942 + L3 LINE CR1 1167 1463 -114 * 276 294 233 18 chr3 143877633 143877796 -83646782 - MIR SINE MIR -49 213 16 398 240 44 25 chr3 143878101 143878314 -83646264 + L1 LINE L1 5204 5425 -726 198 0 0 0 chr3 143878511 143878533 -83646045 + (A)n Simple_repeat Simple_repeat 1 22 0 273 291 84 45 chr3 143878812 143878991 -83645587 + L1ME4a LINE L1 5477 5662 -459 424 264 110 59 chr3 143879091 143879345 -83645233 + L1ME4a LINE L1 5837 6103 -18 24 0 0 0 chr3 143879360 143879384 -83645194 + AT_rich Low_complexity Low_complexity 1 24 0 227 319 44 11 chr3 143879833 143879924 -83644654 - L2 LINE L2 -493 2821 2728 315 291 71 28 chr3 143880893 143881108 -83643470 + L1MC4 LINE L1 7630 7962 -80 420 293 35 0 chr3 143881317 143881433 -83643145 + MIR SINE MIR 110 229 -33 326 327 20 0 chr3 143881474 143881575 -83643003 + MIR SINE MIR 157 259 -3 389 252 50 25 chr3 143881629 143881748 -83642830 - MIR SINE MIR -62 200 79 183 294 152 11 chr3 143881700 143881792 -83642786 + MIR SINE MIR 34 138 -124 * 314 360 6 6 chr3 143882144 143882322 -83642256 + (TGG)n Simple_repeat Simple_repeat 2 179 0 209 207 0 52 chr3 143882297 143882355 -83642223 + (ATGGTG)n Simple_repeat Simple_repeat 1 55 0 * 206 239 0 11 chr3 143882374 143882462 -83642116 + (TGG)n Simple_repeat Simple_repeat 1 87 0 324 191 0 0 chr3 143882588 143882677 -83641901 + GA-rich Low_complexity Low_complexity 1 89 0 279 202 0 0 chr3 143882782 143882866 -83641712 + (TGG)n Simple_repeat Simple_repeat 2 85 0 441 213 0 0 chr3 143882878 143883042 -83641536 + (TGG)n Simple_repeat Simple_repeat 2 165 0 395 288 124 40 chr3 143883125 143883302 -83641276 - MIR SINE MIR -70 192 1 239 370 14 8 chr3 143883473 143883592 -83640986 - MIR SINE MIR -54 154 31 2112 39 4 4 chr3 143883945 143884200 -83640378 - L1PA5 LINE L1 0 6154 5900 423 249 214 35 chr3 143884795 143884996 -83639582 + MIR SINE MIR 13 249 -13 264 252 0 94 chr3 143885412 143885539 -83639039 - L2 LINE L2 -5 3267 3153 1579 278 79 36 chr3 143886151 143886912 -83637666 - L1ME3A LINE L1 -49 6121 5330 194 368 40 0 chr3 143887380 143887456 -83637122 + L2 LINE L2 3142 3220 -52 413 298 84 19 chr3 143887541 143887756 -83636822 - MIR SINE MIR -27 235 7 2291 112 13 126 chr3 143888116 143888296 -83636282 + LTR32 LTR ERVL 67 266 -205 1395 103 43 56 chr3 143888296 143888529 -83636049 - MER30 DNA MER1_type 0 230 1 2291 112 13 126 chr3 143888529 143888802 -83635776 + LTR32 LTR ERVL 266 469 -2 369 300 43 14 chr3 143889110 143889250 -83635328 - MIR SINE MIR -21 241 98 21 0 0 0 chr3 143891282 143891303 -83633275 + AT_rich Low_complexity Low_complexity 1 21 0 280 271 177 0 chr3 143892036 143892132 -83632446 - MIR SINE MIR -25 237 125 * 436 287 84 35 chr3 143892124 143892326 -83632252 - MIR SINE MIR -4 258 47 209 242 152 30 chr3 143892600 143892699 -83631879 + MIR SINE MIR 21 131 -131 213 221 81 47 chr3 143893102 143893188 -83631390 - MIR3 SINE MIR -114 94 6 184 308 77 29 chr3 143893440 143893544 -83631034 + MIR SINE MIR 49 157 -105 322 314 44 36 chr3 143894705 143894842 -83629736 - L2 LINE L2 -26 3246 3109 538 230 95 66 chr3 143895763 143896067 -83628511 - L1MC5 LINE L1 -45 7916 7604 1181 180 35 31 chr3 143896325 143896580 -83627998 + AluJo SINE Alu 50 305 -7 291 283 35 29 chr3 143896647 143896820 -83627758 + GA-rich Low_complexity Low_complexity 2 175 0 1924 232 73 61 chr3 143896901 143897474 -83627104 + MLT1E LTR MaLR 14 593 0 591 230 43 92 chr3 143897566 143897914 -83626664 + L1MCc LINE L1 1206 1536 -4887 * 687 245 0 0 chr3 143897913 143898072 -83626506 - L1M4c LINE L1 -4823 1823 1665 2848 230 8 27 chr3 143898077 143898741 -83625837 - L1M4c LINE L1 -5891 651 1 471 268 82 46 chr3 143898741 143899107 -83625471 + L1MCc LINE L1 1528 1906 -5035 1811 265 141 25 chr3 143899112 143899415 -83625163 + L1MCc LINE L1 2700 2966 -3975 2070 203 69 15 chr3 143899415 143899894 -83624684 - MLT1D LTR MaLR 0 505 1 1811 265 141 25 chr3 143899894 143901551 -83623027 + L1MCc LINE L1 2966 4866 -2075 265 211 200 21 chr3 143901946 143902041 -83622537 - MIR SINE MIR -64 144 33 1294 168 67 46 chr3 143902296 143902581 -83621997 - AluJo SINE Alu -19 293 3 1576 152 10 38 chr3 143902616 143902926 -83621652 - AluJo SINE Alu 0 302 1 582 293 16 68 chr3 143903091 143903204 -83621374 + MIR SINE MIR 1 118 -144 3867 23 5 0 chr3 143903204 143903682 -83620896 + L1PA2 LINE L1 5702 6181 0 582 293 16 68 chr3 143903682 143903816 -83620762 + MIR SINE MIR 118 236 -26 996 179 22 0 chr3 143904144 143904328 -83620250 - L1MB7 LINE L1 -16 6168 5981 2274 172 14 11 chr3 143904328 143904760 -83619818 + L1MB7 LINE L1 5740 6175 -9 384 78 0 0 chr3 143904760 143904824 -83619754 - Charlie4 DNA MER1_type -97 1864 1801 1745 172 10 7 chr3 143905360 143905668 -83618910 + AluJo SINE Alu 1 309 -3 240 196 320 27 chr3 143905715 143905820 -83618758 + MIR SINE MIR 12 133 -75 1465 183 25 0 chr3 143906991 143907265 -83617313 - AluJo SINE Alu -29 283 3 266 289 53 0 chr3 143907271 143907347 -83617231 - MIR SINE MIR -118 144 65 607 263 141 51 chr3 143907933 143908483 -83616095 - L2 LINE L2 -9 3304 2699 275 265 96 29 chr3 143910025 143910161 -83614417 + LTR67 LTR ERVL 409 553 -4 271 262 93 82 chr3 143910216 143910399 -83614179 + L2 LINE L2 3125 3309 -4 2757 7 0 0 chr3 143910465 143910773 -83613805 - AluYa8 SINE Alu -2 308 1 283 285 124 15 chr3 143911073 143911210 -83613368 - MARNA DNA Mariner -125 461 310 230 291 0 0 chr3 143911378 143911466 -83613112 + (TATATG)n Simple_repeat Simple_repeat 1 88 0 183 382 13 0 chr3 143912053 143912129 -83612449 - L2 LINE L2 -2 3311 3235 379 308 34 8 chr3 143912327 143912444 -83612134 + MIR3 SINE MIR 38 157 -51 2254 84 0 7 chr3 143913222 143913521 -83611057 + AluY SINE Alu 1 297 -14 215 363 101 36 chr3 143913539 143913927 -83610651 - L2 LINE L2 -338 2976 2564 836 293 47 20 chr3 143914314 143914359 -83610219 + L1ME LINE L1 142 184 -6021 1365 177 79 65 chr3 143914359 143914417 -83610161 - MLT1A2 LTR MaLR -2 372 316 2090 112 0 0 chr3 143914417 143914731 -83609847 - AluSx SINE Alu 0 314 1 1365 177 79 65 chr3 143914731 143915038 -83609540 - MLT1A2 LTR MaLR -58 316 1 836 293 47 20 chr3 143915038 143915388 -83609190 + L1ME LINE L1 184 573 -5632 * 1010 243 44 30 chr3 143915357 143915724 -83608854 + L1M4 LINE L1 3009 3380 -2835 380 288 40 8 chr3 143916032 143916157 -83608421 + LTR67 LTR ERVL 428 556 -1 220 290 79 47 chr3 143916313 143916527 -83608051 - L2 LINE L2 -1076 2238 2018 * 235 289 64 90 chr3 143916507 143916663 -83607915 - L2 LINE L2 -220 3052 2901 443 305 136 48 chr3 143917097 143917656 -83606922 + L2 LINE L2 2499 3088 -184 354 363 55 34 chr3 143917801 143918038 -83606540 + MIR SINE MIR 14 255 -7 236 277 20 10 chr3 143918567 143918668 -83605910 + L1ME LINE L1 1697 1798 -4598 747 253 75 37 chr3 143918706 143919054 -83605524 + L1ME LINE L1 2254 2614 -3601 15092 61 2 4 chr3 143919205 143921094 -83603484 - L1P LINE L1 -4258 1888 4 965 312 133 45 chr3 143921107 143921928 -83602650 - HAL1 LINE L1 -1606 901 9 398 277 66 22 chr3 143922041 143922312 -83602266 + L1ME4a LINE L1 5634 5916 -205 219 353 32 55 chr3 143922993 143923211 -83601367 - L2 LINE L2 -53 3219 3007 1745 146 0 24 chr3 143925819 143926106 -83598472 - AluJo SINE Alu -32 280 1 356 352 74 17 chr3 143926759 143926989 -83597589 - MIR SINE MIR 0 262 20 240 255 142 64 chr3 143927438 143927642 -83596936 + HAL1 LINE L1 1514 1733 -774 243 103 0 0 chr3 143927715 143927754 -83596824 + (TA)n Simple_repeat Simple_repeat 2 40 0 243 103 0 0 chr3 143927840 143927879 -83596699 + (TA)n Simple_repeat Simple_repeat 1 39 0 3664 197 67 44 chr3 143927912 143929747 -83594831 + L1MEd LINE L1 1084 2962 -3167 2106 157 12 116 chr3 143929747 143930258 -83594320 + L1MB4 LINE L1 5511 5968 -215 2263 105 3 3 chr3 143930258 143930554 -83594024 + AluSq SINE Alu 1 296 -17 40586 50 3 1 chr3 143930554 143936329 -83588249 + L1PA4 LINE L1 359 6144 -11 770 170 36 63 chr3 143936352 143936575 -83588003 + L1MB4 LINE L1 5952 6168 -12 414 167 122 0 chr3 143936722 143936812 -83587766 + MLT1D LTR MaLR 405 505 0 923 202 24 56 chr3 143936847 143937060 -83587518 + MER20 DNA MER1_type 14 219 0 2761 145 61 0 chr3 143938481 143938958 -83585620 - L1 LINE L1 -1752 4394 3889 949 157 162 5 chr3 143938957 143939161 -83585417 + L1MA7 LINE L1 5863 6098 -193 * 611 196 0 0 chr3 143939155 143939267 -83585311 + L1P LINE L1 4876 4987 -1159 * 264 51 77 0 chr3 143939267 143939306 -83585272 + MLT1K LTR MaLR 18 59 -529 285 248 0 40 chr3 143939570 143939671 -83584907 + LTR67 LTR ERVL 433 529 -28 365 282 46 88 chr3 143940922 143941184 -83583394 + MLT1L LTR MaLR 1 251 -364 244 272 22 0 chr3 143941320 143941412 -83583166 + MLT1L LTR MaLR 508 601 -14 5260 144 24 66 chr3 143942420 143942607 -83581971 + L1MB8 LINE L1 4855 5048 -1130 2313 109 3 0 chr3 143942607 143942911 -83581667 - AluSg SINE Alu -5 305 1 5260 144 24 66 chr3 143942911 143943021 -83581557 + L1MB8 LINE L1 5048 5161 -1017 228 216 0 0 chr3 143943021 143943058 -83581520 + AluY SINE Alu 3 39 -264 5260 144 24 66 chr3 143943058 143943119 -83581459 + L1MB8 LINE L1 5161 5223 -955 1559 129 66 59 chr3 143943119 143943405 -83581173 + AluJo SINE Alu 1 288 -24 5260 144 24 66 chr3 143943405 143944410 -83580168 + L1MB8 LINE L1 5223 6176 -2 430 273 61 8 chr3 143945178 143945310 -83579268 + MIR SINE MIR 13 151 -111 590 203 111 0 chr3 143945310 143945463 -83579115 - MER104 DNA Tc2 0 180 11 201 167 0 0 chr3 143945546 143945582 -83578996 - L2 LINE L2 -8 3305 3270 325 263 45 8 chr3 143946135 143946268 -83578310 + LTR50 LTR ERVL 27 164 -631 873 260 110 4 chr3 143946376 143946714 -83577864 + LTR50 LTR ERVL 340 795 0 350 290 72 25 chr3 143946758 143947017 -83577561 + L1ME LINE L1 5333 5604 -517 2075 218 123 35 chr3 143947044 143947644 -83576934 + L1MDa LINE L1 40 692 -5848 568 248 21 0 chr3 143947704 143947845 -83576733 + L1MD2 LINE L1 6194 6337 -22 552 218 28 41 chr3 143947864 143948035 -83576543 + L1ME1 LINE L1 6007 6183 -1 396 185 84 25 chr3 143948089 143948208 -83576370 + L1MC4 LINE L1 7112 7237 -805 * 524 288 113 45 chr3 143948197 143948261 -83576317 + L1M4c LINE L1 14 72 -6470 2044 136 13 3 chr3 143948261 143948569 -83576009 + AluSx SINE Alu 1 311 -1 524 288 113 45 chr3 143948569 143948886 -83575692 + L1M4c LINE L1 72 421 -6121 4790 201 25 12 chr3 143948928 143949785 -83574793 + L1PA15 LINE L1 1631 2506 -3640 2273 76 11 0 chr3 143949785 143950061 -83574517 + AluY SINE Alu 17 295 -16 4790 201 25 12 chr3 143950061 143950234 -83574344 + L1PA15 LINE L1 2506 2675 -3471 11552 184 49 12 chr3 143950259 143950658 -83573920 + L1PA15 LINE L1 2880 3263 -2902 2315 95 3 22 chr3 143950658 143950973 -83573605 + AluSc SINE Alu 1 309 0 11552 184 49 12 chr3 143950973 143952361 -83572217 + L1PA15 LINE L1 3263 4599 -1566 2138 128 3 10 chr3 143952361 143952665 -83571913 + AluSx SINE Alu 1 302 -10 11552 184 49 12 chr3 143952665 143953638 -83570940 + L1PA15 LINE L1 4599 5714 -451 2489 109 21 107 chr3 143953638 143954106 -83570472 - MSTA LTR MaLR 0 428 1 11552 184 49 12 chr3 143954106 143954576 -83570002 + L1PA15 LINE L1 5714 6165 0 312 242 110 0 chr3 143957929 143958020 -83566558 + L1MC4 LINE L1 6610 6710 -1332 754 159 37 90 chr3 143958060 143958181 -83566397 + L1M4c LINE L1 2263 2366 -4280 1021 176 41 9 chr3 143958181 143958402 -83566176 - L1MB4 LINE L1 -8 6172 5945 754 159 37 90 chr3 143958402 143958525 -83566053 + L1M4c LINE L1 2366 2494 -4152 1438 188 14 61 chr3 143958525 143958818 -83565760 + AluJo SINE Alu 1 279 -33 317 255 10 0 chr3 143958822 143958920 -83565658 + G-rich Low_complexity Low_complexity 5 103 0 259 217 43 29 chr3 143958922 143958991 -83565587 + GA-rich Low_complexity Low_complexity 3 72 0 3324 220 119 16 chr3 143958991 143960438 -83564140 + L1M4c LINE L1 2484 4074 -2570 1434 181 0 4 chr3 143960439 143960676 -83563902 + AluJo SINE Alu 1 236 -76 797 171 11 61 chr3 143960679 143960860 -83563718 + MLT1C LTR MaLR 63 234 -233 3445 165 22 33 chr3 143960860 143961036 -83563542 + L1MB3 LINE L1 5501 5678 -505 1688 158 37 17 chr3 143961036 143961333 -83563245 + AluJo SINE Alu 1 303 -9 3445 165 22 33 chr3 143961333 143961846 -83562732 + L1MB3 LINE L1 5678 6182 -1 1355 248 101 53 chr3 143961860 143961977 -83562601 + L1MC4 LINE L1 7205 7315 -727 2264 156 76 2 chr3 143961977 143962374 -83562204 + MSTA LTR MaLR 1 426 -2 1355 248 101 53 chr3 143962374 143962913 -83561665 + L1MC4 LINE L1 7315 7892 -150 280 327 56 0 chr3 143963214 143963321 -83561257 + L3b LINE CR1 1261 1373 -210 1312 181 13 0 chr3 143964841 143965073 -83559505 - MER46A DNA MER2_type 0 236 2 414 252 81 0 chr3 143965352 143965463 -83559115 + L2 LINE L2 3190 3309 -4 242 179 36 18 chr3 143965518 143965574 -83559004 - MIR SINE MIR -125 137 81 228 335 49 0 chr3 143966115 143966279 -83558299 + MIR SINE MIR 59 230 -32 375 105 0 0 chr3 143966295 143966352 -83558226 + (CA)n Simple_repeat Simple_repeat 2 58 0 440 247 95 25 chr3 143967832 143967990 -83556588 - MIR SINE MIR -38 224 56 243 256 141 0 chr3 143970376 143970454 -83554124 - MIR SINE MIR -146 116 28 2159 130 0 7 chr3 143970638 143970937 -83553641 - AluJb SINE Alu -9 303 7 368 257 58 34 chr3 143972238 143972415 -83552163 + MLT1J2 LTR MaLR 10 175 -275 329 232 80 24 chr3 143972521 143972646 -83551932 + MLT1J LTR MaLR 378 509 -2 326 294 128 19 chr3 143972712 143972923 -83551655 + L2 LINE L2 2436 2669 -645 376 354 102 44 chr3 143972954 143973386 -83551192 + L2 LINE L2 2816 3272 0 2372 115 0 0 chr3 143973538 143973850 -83550728 - AluSx SINE Alu 0 312 1 373 301 73 22 chr3 143974687 143974823 -83549755 - MIR SINE MIR -10 252 110 415 285 136 32 chr3 143976690 143976911 -83547667 - MIR SINE MIR -13 249 6 487 253 95 67 chr3 143976948 143977250 -83547328 + MLT1J LTR MaLR 37 358 -153 1678 108 18 0 chr3 143977250 143977473 -83547105 + AluSg/x SINE Alu 72 298 -14 487 253 95 67 chr3 143977473 143977632 -83546946 + MLT1J LTR MaLR 358 511 0 2457 175 41 2 chr3 143979282 143979694 -83544884 - MSTC LTR MaLR 0 428 1 518 252 21 19 chr3 143980424 143980579 -83543999 - MER5A DNA MER1_type -18 167 4 214 290 0 29 chr3 143981075 143981144 -83543434 - MIR SINE MIR -48 214 148 1090 293 109 18 chr3 143981802 143982469 -83542109 + L1MCc LINE L1 850 1570 -4852 853 196 65 0 chr3 143982720 143982904 -83541674 + MER58C DNA MER1_type 20 215 0 461 222 0 0 chr3 143983797 143983878 -83540700 + MER2 DNA MER2_type 18 98 -247 309 197 0 16 chr3 143983903 143983964 -83540614 + MER2 DNA MER2_type 286 345 0 489 308 111 63 chr3 143984316 143984729 -83539849 + L2 LINE L2 2827 3259 -13 261 0 0 0 chr3 143984743 143984772 -83539806 + (TA)n Simple_repeat Simple_repeat 2 30 0 2192 107 7 10 chr3 143984824 143985124 -83539454 - AluSx SINE Alu -13 299 1 1458 121 40 4 chr3 143986419 143986667 -83537911 + Tigger1 DNA MER2_type 1838 2094 -324 15081 91 16 22 chr3 143986669 143988940 -83535638 + L1P LINE L1 359 2617 -3529 254 378 0 9 chr3 143989078 143989189 -83535389 + G-rich Low_complexity Low_complexity 5 114 0 375 248 0 0 chr3 143989216 143989321 -83535257 + G-rich Low_complexity Low_complexity 1 105 0 286 385 0 19 chr3 143989324 143989480 -83535098 + GA-rich Low_complexity Low_complexity 4 156 0 * 490 361 0 17 chr3 143989451 143989680 -83534898 + G-rich Low_complexity Low_complexity 1 225 0 1515 87 60 5 chr3 143990041 143990259 -83534319 - MER30 DNA MER1_type 0 230 1 189 313 48 41 chr3 143992017 143992164 -83532414 + L2 LINE L2 2597 2744 -570 187 250 143 60 chr3 143992453 143992537 -83532041 + L2 LINE L2 3136 3226 -46 704 317 58 3 chr3 143992894 143993206 -83531372 + MLT1L LTR MaLR 172 500 -115 327 275 113 28 chr3 143993566 143993708 -83530870 - MIR3 SINE MIR -21 187 34 320 246 85 113 chr3 143994396 143994916 -83529662 + L1ME4a LINE L1 5600 6104 -17 1774 190 0 13 chr3 143994974 143995290 -83529288 - AluJo SINE Alu 0 312 1 431 268 183 28 chr3 143995513 143995726 -83528852 - MIR SINE MIR -10 252 7 1748 133 48 7 chr3 143995956 143996227 -83528351 - AluJo SINE Alu -1 311 30 192 260 60 0 chr3 143996270 143996320 -83528258 + MIR SINE MIR 123 175 -87 15199 129 35 5 chr3 144000469 144002816 -83521762 + Tigger1 DNA MER2_type 1 2416 -2 234 156 0 22 chr3 144003150 144003195 -83521383 - L2 LINE L2 -5 3308 3265 269 324 14 33 chr3 144003253 144003466 -83521112 + L1MC/D LINE L1 5621 5829 -1979 180 0 0 0 chr3 144003833 144003853 -83520725 + (TAA)n Simple_repeat Simple_repeat 1 20 0 2594 206 70 29 chr3 144003927 144004621 -83519957 + L1MB8 LINE L1 4799 5463 -715 1616 201 10 30 chr3 144004621 144004925 -83519653 + AluJo SINE Alu 1 298 -14 2594 206 70 29 chr3 144004925 144005517 -83519061 + L1MB8 LINE L1 5463 6177 -1 310 214 122 99 chr3 144006506 144006637 -83517941 - MER63 DNA MER1_type -302 760 1 2371 102 0 3 chr3 144006902 144007205 -83517373 + AluSq SINE Alu 1 302 -11 242 284 30 75 chr3 144007299 144007433 -83517145 - L2 LINE L2 -20 3293 3166 348 349 62 30 chr3 144007627 144008038 -83516540 - L2 LINE L2 -172 3141 2723 239 313 0 12 chr3 144008418 144008501 -83516077 + MIR SINE MIR 64 145 -117 671 265 32 21 chr3 144008548 144008737 -83515841 + MIR SINE MIR 31 221 -41 243 206 79 32 chr3 144008845 144008908 -83515670 - MIR SINE MIR 0 262 197 * 278 246 154 45 chr3 144008906 144009016 -83515562 + MIR3 SINE MIR 79 200 -8 818 152 8 0 chr3 144009463 144009588 -83514990 - FLAM_A SINE Alu -8 134 9 296 323 57 15 chr3 144009871 144010035 -83514543 - MIR SINE MIR -36 172 2 302 280 124 56 chr3 144010228 144010478 -83514100 + L2 LINE L2 3047 3313 0 187 285 133 86 chr3 144010479 144010876 -83513702 - L2 LINE L2 -15 3257 2842 226 134 51 0 chr3 144011757 144011802 -83512776 - MIR SINE MIR -65 143 102 269 311 118 17 chr3 144012197 144012316 -83512262 - MIR SINE MIR -98 164 34 187 269 0 19 chr3 144012312 144012364 -83512214 - L2 LINE L2 -1 3271 3221 * 24 0 0 0 chr3 144012791 144012815 -83511763 + AT_rich Low_complexity Low_complexity 1 24 0 1988 68 0 0 chr3 144012981 144013215 -83511363 - AluY SINE Alu -4 307 74 278 266 138 0 chr3 144013323 144013417 -83511161 - L2 LINE L2 -5 3308 3202 253 296 204 37 chr3 144014064 144014334 -83510244 - L2 LINE L2 -786 2528 2214 199 283 0 33 chr3 144015157 144015217 -83509361 + L2 LINE L2 3251 3308 -5 3549 223 42 10 chr3 144016009 144016898 -83507680 + L1MB8 LINE L1 3995 4911 -1235 695 204 7 14 chr3 144016941 144017083 -83507495 + MER58A DNA MER1_type 1 141 0 708 175 8 0 chr3 144017085 144017205 -83507373 + MER2 DNA MER2_type 1 121 -224 2693 181 28 41 chr3 144017209 144017850 -83506728 + L1MB8 LINE L1 5266 5898 -286 1106 138 31 0 chr3 144017960 144018155 -83506423 - MER2 DNA MER2_type -130 215 15 669 186 110 42 chr3 144018184 144018414 -83506164 + L1MB8 LINE L1 5924 6172 -6 737 161 73 0 chr3 144018414 144018538 -83506040 - FLAM_A SINE Alu 0 133 1 417 273 191 6 chr3 144018734 144018917 -83505661 + MIR SINE MIR 20 236 -26 249 321 41 100 chr3 144018941 144019212 -83505366 + L2 LINE L2 3008 3262 -10 2139 122 17 0 chr3 144019802 144020097 -83504481 - AluSx SINE Alu -12 300 1 304 275 107 0 chr3 144020453 144020561 -83504017 + MIR3 SINE MIR 63 187 -21 197 220 40 0 chr3 144020726 144020776 -83503802 + MIR SINE MIR 88 139 -123 239 210 111 54 chr3 144021243 144021327 -83503251 - MIR SINE MIR -55 153 64 545 227 153 20 chr3 144021493 144021718 -83502860 + MIR SINE MIR 8 262 0 * 659 307 143 20 chr3 144021715 144022106 -83502472 - L2 LINE L2 -48 3265 2827 216 231 25 50 chr3 144022601 144022722 -83501856 + (CCCCG)n Simple_repeat Simple_repeat 1 118 0 241 314 15 44 chr3 144023191 144023328 -83501250 - L2 LINE L2 -1 3271 3139 247 326 47 16 chr3 144023570 144023699 -83500879 - L2 LINE L2 -457 2857 2725 335 199 57 121 chr3 144024164 144024305 -83500273 - LTR16A1 LTR ERVL -14 443 312 2464 204 62 15 chr3 144024312 144024993 -83499585 - L1 LINE L1 -2619 3527 2815 * 4787 175 33 21 chr3 144024992 144026278 -83498300 + L1MA9 LINE L1 4340 5640 -672 1689 173 63 53 chr3 144026281 144026675 -83497903 + MER57A LTR ERV1 6 403 0 2124 127 56 64 chr3 144026675 144027095 -83497483 + L1MA9 LINE L1 5642 6149 -163 2099 129 7 13 chr3 144027095 144027398 -83497180 + AluSx SINE Alu 1 301 -11 2124 127 56 64 chr3 144027398 144027539 -83497039 + L1MA9 LINE L1 6149 6290 -22 1526 166 58 18 chr3 144027546 144027824 -83496754 - AluJo SINE Alu -23 289 1 289 227 120 0 chr3 144027996 144028071 -83496507 - MIR SINE MIR -76 186 103 593 287 16 62 chr3 144028351 144028672 -83495906 + L1MC4 LINE L1 6962 7267 -775 350 182 0 0 chr3 144028686 144028741 -83495837 - Alu SINE Alu -245 55 1 1064 253 159 51 chr3 144028895 144029222 -83495356 + L1MC4 LINE L1 7285 7575 -467 1912 154 3 31 chr3 144029222 144029541 -83495037 + AluJb SINE Alu 1 310 -2 1064 253 159 51 chr3 144029541 144029897 -83494681 + L1MC4 LINE L1 7575 8042 0 2172 115 28 0 chr3 144030329 144030616 -83493962 + AluSx SINE Alu 1 295 -17 1349 222 121 11 chr3 144030626 144030817 -83493761 + L1M4 LINE L1 4056 4224 -1922 249 33 0 0 chr3 144030817 144030847 -83493731 + (CA)n Simple_repeat Simple_repeat 1 30 0 1349 222 121 11 chr3 144030847 144031034 -83493544 + L1M4 LINE L1 4224 4476 -1670 427 279 29 0 chr3 144031043 144031183 -83493395 + L1ME3 LINE L1 5988 6131 -31 890 143 127 48 chr3 144031184 144031244 -83493334 + AluJo SINE Alu 79 133 -179 5397 131 39 1 chr3 144031244 144032598 -83491980 + L1PA16 LINE L1 4785 6165 -1 890 143 127 48 chr3 144032598 144032726 -83491852 + AluJo SINE Alu 133 282 -30 250 268 61 0 chr3 144032957 144033039 -83491539 - MLT1J LTR MaLR -324 187 101 3186 178 31 0 chr3 144033436 144033975 -83490603 - MER41D LTR ERV1 -1 556 1 204 239 90 0 chr3 144034149 144034216 -83490362 + MIR3 SINE MIR 87 159 -49 1533 228 137 86 chr3 144034524 144035260 -83489318 - MER21B LTR ERV1 -87 776 3 374 150 0 0 chr3 144035306 144035366 -83489212 + MSTB LTR MaLR 1 60 -366 6201 175 22 4 chr3 144035366 144036847 -83487731 - L1PB1 LINE L1 -2675 4187 2623 * 8453 163 18 13 chr3 144036844 144037769 -83486809 + L1PB1 LINE L1 4206 5125 -1742 2235 104 7 7 chr3 144037769 144038066 -83486512 + AluSc SINE Alu 1 297 -12 8453 163 18 13 chr3 144038066 144039442 -83485136 + L1PB1 LINE L1 5125 6515 -352 450 36 0 0 chr3 144039442 144039498 -83485080 + (TA)n Simple_repeat Simple_repeat 2 57 0 8453 163 18 13 chr3 144039498 144039852 -83484726 + L1PB1 LINE L1 6515 6866 -1 1987 150 75 0 chr3 144039879 144040238 -83484340 + MSTB LTR MaLR 41 426 0 184 247 74 123 chr3 144040433 144040595 -83483983 - L2 LINE L2 -459 2855 2702 2447 122 46 55 chr3 144040646 144040797 -83483781 - MSTB1 LTR MaLR 0 432 281 2072 117 0 37 chr3 144040797 144041139 -83483439 - AluSc SINE Alu 0 331 1 2447 122 46 55 chr3 144041139 144041422 -83483156 - MSTB1 LTR MaLR -151 281 1 4287 171 27 5 chr3 144041422 144042211 -83482367 - MSTB1-int LTR MaLR 0 1651 846 246 164 219 0 chr3 144042465 144042538 -83482040 + LTR33 LTR ERVL 421 509 -12 228 245 0 59 chr3 144042556 144042658 -83481920 + (TG)n Simple_repeat Simple_repeat 1 96 0 342 0 0 0 chr3 144042861 144042899 -83481679 + (T)n Simple_repeat Simple_repeat 1 38 0 345 153 0 0 chr3 144043223 144043295 -83481283 + (CA)n Simple_repeat Simple_repeat 2 73 0 256 161 32 0 chr3 144043701 144043763 -83480815 + (TA)n Simple_repeat Simple_repeat 2 65 0 634 224 15 0 chr3 144043764 144043898 -83480680 + MIR SINE MIR 104 239 -23 3751 142 21 15 chr3 144043935 144044549 -83480029 + LTR31 LTR ERV1 2 619 0 555 228 0 9 chr3 144044615 144044729 -83479849 - MIR SINE MIR -114 148 36 504 122 0 27 chr3 144045975 144046089 -83478489 + L1MC2 LINE L1 5904 6011 -155 343 228 80 74 chr3 144047112 144047274 -83477304 + MIR SINE MIR 52 214 -48 1754 212 13 0 chr3 144049161 144049467 -83475111 + AluJo SINE Alu 1 310 -2 937 253 215 15 chr3 144049533 144049988 -83474590 + MLT1H LTR MaLR 3 548 -1 975 275 111 17 chr3 144050321 144050918 -83473660 - HAL1 LINE L1 -724 1783 1131 248 262 0 0 chr3 144050921 144050982 -83473596 + (TA)n Simple_repeat Simple_repeat 2 62 0 342 67 0 0 chr3 144051052 144051097 -83473481 + (CA)n Simple_repeat Simple_repeat 2 46 0 249 233 0 29 chr3 144051105 144051198 -83473380 - HAL1 LINE L1 -1423 1084 993 847 138 32 32 chr3 144051198 144051386 -83473192 - L1MB8 LINE L1 0 6178 5991 572 297 66 31 chr3 144051532 144051788 -83472790 + L1M4 LINE L1 2219 2483 -3663 612 303 55 46 chr3 144051789 144052222 -83472356 - MLT1K LTR MaLR -2 586 150 390 306 119 58 chr3 144052387 144052799 -83471779 + L1M4 LINE L1 2475 2911 -3235 287 221 34 74 chr3 144052840 144052989 -83471589 + L1M4 LINE L1 2915 3057 -3089 470 279 46 76 chr3 144053045 144053242 -83471336 + MIR SINE MIR 1 191 -71 511 306 148 0 chr3 144053261 144053457 -83471121 - MIR SINE MIR -18 244 20 365 263 132 26 chr3 144055134 144055286 -83469292 + HAL1b LINE L1 94 261 -1087 583 250 14 73 chr3 144055368 144055588 -83468990 + MLT1F1 LTR MaLR 1 207 -360 1003 241 27 0 chr3 144055642 144055866 -83468712 + MLT1F1 LTR MaLR 338 567 0 1567 231 94 66 chr3 144055888 144056730 -83467848 + HAL1b LINE L1 414 1284 -64 1908 109 4 19 chr3 144056730 144056996 -83467582 - AluSx SINE Alu -12 300 39 1567 231 94 66 chr3 144056996 144057056 -83467522 + HAL1b LINE L1 1284 1341 -7 249 287 61 22 chr3 144057091 144057321 -83467257 + L1M4 LINE L1 3053 3291 -2855 1899 179 10 3 chr3 144057325 144057633 -83466945 + AluJo SINE Alu 1 310 -2 185 349 60 12 chr3 144058636 144058719 -83465859 + L2 LINE L2 2889 2975 -338 373 297 95 0 chr3 144059317 144059465 -83465113 + MIR3 SINE MIR 36 197 -11 521 308 26 6 chr3 144060436 144060592 -83463986 + MIR SINE MIR 39 197 -65 421 331 105 16 chr3 144061331 144061579 -83462999 - L3 LINE CR1 -454 1123 854 209 294 20 0 chr3 144061559 144061610 -83462968 + L2 LINE L2 3241 3292 -21 * 208 0 30 30 chr3 144062045 144062078 -83462500 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 250 300 133 13 chr3 144064387 144064537 -83460041 + MER5A DNA MER1_type 22 189 0 182 222 89 67 chr3 144064601 144064691 -83459887 - MIR3 SINE MIR -26 182 91 231 317 0 0 chr3 144065652 144065712 -83458866 + L2 LINE L2 3209 3268 -4 204 364 7 45 chr3 144066807 144066961 -83457617 - MIR3 SINE MIR -13 195 48 969 193 0 88 chr3 144067303 144067542 -83457036 - AluJo SINE Alu -10 302 85 329 135 0 0 chr3 144067542 144067594 -83456984 - FRAM SINE Alu -52 114 63 1566 133 68 4 chr3 144067606 144067855 -83456723 - AluSx SINE Alu -4 308 44 2138 109 3 10 chr3 144067891 144068184 -83456394 - AluY SINE Alu -20 291 1 343 303 77 46 chr3 144068581 144068925 -83455653 + L2 LINE L2 2702 3056 -257 370 229 132 28 chr3 144069265 144069409 -83455169 - MIR3 SINE MIR -49 159 1 194 264 194 0 chr3 144070211 144070283 -83454295 - MIR SINE MIR -86 122 37 275 317 37 0 chr3 144071136 144071218 -83453360 + L2 LINE L2 3203 3287 -26 1478 62 0 0 chr3 144071357 144071536 -83453042 - AluY SINE Alu 0 311 133 337 309 65 99 chr3 144071966 144072442 -83452136 - L1M2 LINE L1 -5634 1215 756 29 84 0 0 chr3 144072457 144072528 -83452050 + GC_rich Low_complexity Low_complexity 1 71 0 1094 268 85 24 chr3 144073199 144073850 -83450728 - L1ME3A LINE L1 -223 5947 5259 4100 173 62 10 chr3 144073872 144074694 -83449884 - MER6 DNA MER2_type 0 865 1 2866 106 31 0 chr3 144074745 144075160 -83449418 + MSTA LTR MaLR 1 428 0 325 308 64 17 chr3 144075178 144075539 -83449039 - L1ME3A LINE L1 -980 5166 4789 255 200 100 50 chr3 144075564 144075644 -83448934 + L2 LINE L2 3199 3282 -31 415 345 160 32 chr3 144075699 144076099 -83448479 - L3 LINE CR1 -94 1483 1033 1901 153 3 0 chr3 144076525 144076820 -83447758 - AluJb SINE Alu -16 296 1 4970 164 8 13 chr3 144077143 144078153 -83446425 - L1MB3 LINE L1 -1 6182 5177 917 141 7 0 chr3 144078154 144078289 -83446289 - FAM SINE Alu -16 169 34 3814 222 37 12 chr3 144078296 144079332 -83445246 - L1MB3 LINE L1 -966 5180 4120 1094 139 0 60 chr3 144079332 144079533 -83445045 - AluJo SINE Alu -23 289 101 282 336 109 5 chr3 144079533 144079744 -83444834 - L2 LINE L2 -939 2375 2143 228 393 37 0 chr3 144080343 144080450 -83444128 - L2 LINE L2 -3 3310 3200 22 56 0 0 chr3 144081550 144081586 -83442992 + AT_rich Low_complexity Low_complexity 1 36 0 235 111 89 0 chr3 144083251 144083296 -83441282 - MIR SINE MIR -54 208 160 485 158 211 26 chr3 144083336 144083450 -83441128 + AluJo SINE Alu 1 135 -177 668 291 184 2 chr3 144083870 144084299 -83440279 + LTR33 LTR ERVL 1 507 -14 209 229 0 42 chr3 144085247 144085295 -83439283 - L2 LINE L2 -4 3309 3264 207 300 0 0 chr3 144085715 144085765 -83438813 - L2 LINE L2 -258 3055 3006 2001 154 85 33 chr3 144085931 144086354 -83438224 - MER65A LTR ERV1 0 445 1 195 346 69 23 chr3 144086507 144086637 -83437941 - MER5B DNA MER1_type -14 164 29 1886 140 0 75 chr3 144086961 144087282 -83437296 + AluJo SINE Alu 1 297 -15 2100 125 0 13 chr3 144088098 144088403 -83436175 - AluSx SINE Alu -11 301 1 2157 99 7 3 chr3 144088683 144088967 -83435611 + AluY SINE Alu 27 311 0 325 332 41 28 chr3 144089496 144089766 -83434812 + L1M4 LINE L1 3174 3452 -2694 1486 87 60 5 chr3 144089866 144090084 -83434494 + MER30 DNA MER1_type 1 230 0 329 302 85 68 chr3 144090445 144090693 -83433885 + L1M4 LINE L1 4033 4284 -1862 1405 191 0 24 chr3 144090700 144090951 -83433627 + AluJo SINE Alu 38 282 -30 328 202 30 0 chr3 144090957 144091056 -83433522 + (TATG)n Simple_repeat Simple_repeat 3 104 0 409 255 87 61 chr3 144091142 144091373 -83433205 + L1M4 LINE L1 4462 4698 -1448 194 297 22 44 chr3 144091452 144091543 -83433035 + MER5A DNA MER1_type 3 91 -98 * 214 276 124 48 chr3 144091478 144091623 -83432955 - MER5A DNA MER1_type -15 174 19 26 0 0 0 chr3 144093663 144093689 -83430889 + AT_rich Low_complexity Low_complexity 1 26 0 2018 125 0 11 chr3 144094218 144094498 -83430080 - AluSg SINE Alu -7 303 27 280 227 11 124 chr3 144095556 144095741 -83428837 + MER112 DNA MER1_type 2 165 -95 1250 301 166 29 chr3 144096215 144097284 -83427294 + L2 LINE L2 1355 2569 -745 1752 277 77 38 chr3 144098097 144099323 -83425255 - L1M4 LINE L1 -1525 4621 3348 2863 211 66 25 chr3 144099338 144099813 -83424765 - L1ME2 LINE L1 0 6164 5710 1585 194 11 0 chr3 144099813 144100092 -83424486 - AluJo SINE Alu -30 282 1 2863 211 66 25 chr3 144100092 144100757 -83423821 - L1ME2 LINE L1 -454 5710 4980 6100 30 7 0 chr3 144101017 144101745 -83422833 + L1PA4 LINE L1 5422 6154 -1 1525 219 147 16 chr3 144102111 144102210 -83422368 - L1ME2 LINE L1 -1192 4954 4869 2238 59 0 4 chr3 144102210 144102481 -83422097 + AluY SINE Alu 30 299 -12 1525 219 147 16 chr3 144102481 144102960 -83421618 - L1ME2 LINE L1 -1277 4869 4300 2200 237 33 31 chr3 144102976 144103727 -83420851 - L1ME2 LINE L1 -1931 4215 3463 2000 158 40 16 chr3 144103730 144104164 -83420414 - MLT1B LTR MaLR -2 465 4 465 268 32 6 chr3 144104184 144104341 -83420237 - L1ME2 LINE L1 -2718 3428 3268 185 292 21 0 chr3 144105309 144105357 -83419221 - L2 LINE L2 -12 3301 3253 293 397 0 26 chr3 144105584 144105735 -83418843 + MIR3 SINE MIR 47 193 -15 349 227 44 121 chr3 144106229 144106502 -83418076 - L1MC4 LINE L1 0 8042 7791 2505 66 0 0 chr3 144106585 144106888 -83417690 - AluY SINE Alu -8 303 1 6612 144 19 14 chr3 144107034 144109251 -83415327 - L1MA5 LINE L1 0 6300 4067 342 336 20 7 chr3 144109251 144109400 -83415178 - L1MC4 LINE L1 -469 7573 7423 3294 125 80 13 chr3 144112722 144113338 -83411240 - Tigger3b DNA MER2_type -570 661 5 304 220 11 0 chr3 144113374 144113465 -83411113 - L1M4 LINE L1 -1133 5013 4922 683 219 61 47 chr3 144113465 144113744 -83410834 + HAL1 LINE L1 2113 2395 -112 237 332 37 28 chr3 144113880 144114097 -83410481 + L1M4 LINE L1 4740 4958 -1188 520 92 92 0 chr3 144114328 144114435 -83410143 + AluY SINE Alu 201 314 0 1844 143 4 4 chr3 144114571 144114881 -83409697 + AluJb SINE Alu 5 314 0 718 125 0 0 chr3 144115946 144116050 -83408528 - FLAM_A SINE Alu -15 127 24 2112 133 0 0 chr3 144118519 144118827 -83405751 - AluSx SINE Alu 0 308 1 24 0 0 0 chr3 144120486 144120510 -83404068 + AT_rich Low_complexity Low_complexity 1 24 0 283 269 11 11 chr3 144121215 144121308 -83403270 + L1M4 LINE L1 2677 2769 -3377 220 325 175 9 chr3 144121533 144121647 -83402931 + MIR SINE MIR 56 188 -74 1779 243 39 40 chr3 144121814 144122357 -83402221 + MLT1F LTR MaLR 1 542 0 431 195 68 42 chr3 144122647 144122765 -83401813 - MER110 LTR ERV1 -21 470 350 971 282 82 67 chr3 144123163 144124169 -83400409 + L1MEc LINE L1 35 1056 -5340 572 269 76 65 chr3 144124197 144124487 -83400091 - MER68 LTR ERV1 -30 532 240 493 237 77 73 chr3 144124755 144125042 -83399536 + L1MEc LINE L1 1063 1350 -5046 * 3969 186 58 10 chr3 144125020 144125959 -83398619 + L1MCb LINE L1 836 1823 -4741 622 190 199 0 chr3 144125959 144126185 -83398393 + L1MCb LINE L1 2286 2556 -4008 729 149 209 0 chr3 144126201 144126335 -83398243 + FRAM SINE Alu 1 162 -14 608 94 113 0 chr3 144126360 144126466 -83398112 + LTR52 LTR ERVL 1 118 -303 583 207 29 14 chr3 144126553 144126693 -83397885 + LTR52 LTR ERVL 261 402 -19 2526 230 37 11 chr3 144126709 144127333 -83397245 + LTR52-int LTR ERVL 3 672 -2884 613 193 35 0 chr3 144127362 144127476 -83397102 + LTR52-int LTR ERVL 852 969 -2587 692 192 8 19 chr3 144127488 144127738 -83396840 + GA-rich Low_complexity Low_complexity 1 247 0 3387 158 101 5 chr3 144127891 144128548 -83396030 - L1MB4 LINE L1 -50 6130 5411 1372 173 104 71 chr3 144128551 144128577 -83396001 + L1MC3 LINE L1 7360 7384 -401 2340 77 3 10 chr3 144128577 144128890 -83395688 + AluY SINE Alu 1 311 0 1372 173 104 71 chr3 144128890 144129256 -83395322 + L1MC3 LINE L1 7384 7765 -20 2311 262 92 38 chr3 144129275 144130213 -83394365 + L1M4 LINE L1 3320 4341 -1805 2351 92 0 0 chr3 144130213 144130518 -83394060 - AluSg SINE Alu -2 308 4 2311 262 92 38 chr3 144130518 144130802 -83393776 + L1M4 LINE L1 4341 4608 -1538 2604 216 94 34 chr3 144130831 144130921 -83393657 - L1MDb LINE L1 -4573 1833 1750 2030 122 0 3 chr3 144130921 144131209 -83393369 - AluSx SINE Alu -25 287 1 2604 216 94 34 chr3 144131209 144132133 -83392445 - L1MDb LINE L1 -4656 1750 799 11640 108 25 26 chr3 144132706 144133270 -83391308 + Tigger1 DNA MER2_type 315 878 -1540 2419 60 3 0 chr3 144133270 144133572 -83391006 + AluY SINE Alu 1 303 -8 11640 108 25 26 chr3 144133572 144134010 -83390568 + Tigger1 DNA MER2_type 878 1315 -1103 2227 110 0 0 chr3 144134010 144134318 -83390260 + AluSx SINE Alu 1 308 -4 11640 108 25 26 chr3 144134318 144135097 -83389481 + Tigger1 DNA MER2_type 1315 2094 -324 368 138 0 0 chr3 144135099 144135157 -83389421 + L1P LINE L1 359 416 -5730 1551 178 10 20 chr3 144135408 144135701 -83388877 + AluJo SINE Alu 1 290 -22 2447 235 56 47 chr3 144135707 144136812 -83387766 - L1ME1 LINE L1 -9 6157 5033 2237 138 21 0 chr3 144136813 144137147 -83387431 - Tigger1 DNA MER2_type 0 2418 2078 37677 64 13 9 chr3 144137165 144142929 -83381649 - L1PA5 LINE L1 -12 6142 359 5530 153 24 14 chr3 144142931 144143693 -83380885 - Tigger1 DNA MER2_type -324 2094 1341 459 0 0 0 chr3 144143693 144143744 -83380834 + (TA)n Simple_repeat Simple_repeat 2 52 0 2218 108 0 0 chr3 144143744 144144049 -83380529 - AluSx SINE Alu -7 305 1 5530 153 24 14 chr3 144144049 144144262 -83380316 - Tigger1 DNA MER2_type -1076 1342 1109 1644 141 4 14 chr3 144144399 144144675 -83379903 + AluSx SINE Alu 29 301 -11 1672 173 10 3 chr3 144145491 144145786 -83378792 - AluJo SINE Alu -15 297 1 1620 201 59 10 chr3 144145787 144146451 -83378127 - L1ME LINE L1 -492 5908 5216 6218 30 7 0 chr3 144146711 144147440 -83377138 + L1PA4 LINE L1 5422 6155 0 1714 221 146 15 chr3 144147804 144147903 -83376675 - L1ME LINE L1 -1192 5190 5105 2160 59 0 4 chr3 144147903 144148174 -83376404 + AluY SINE Alu 30 299 -12 1714 221 146 15 chr3 144148174 144148657 -83375921 - L1ME LINE L1 -1277 5105 4532 2436 237 33 31 chr3 144148669 144149420 -83375158 - L1ME LINE L1 -1931 4451 3699 621 93 69 5 chr3 144149423 144149525 -83375053 - MLT1B LTR MaLR -2 388 281 294 122 20 0 chr3 144149503 144149552 -83375026 - MLT1B LTR MaLR -28 362 313 * 1285 105 5 11 chr3 144149553 144149744 -83374834 + Tigger1 DNA MER2_type 1702 1891 -527 376 174 0 8 chr3 144149873 144149946 -83374632 - AluS SINE Alu -250 58 1 1512 241 39 23 chr3 144149950 144151209 -83373369 - L1ME LINE L1 -3562 2820 1452 971 254 112 43 chr3 144151397 144152081 -83372497 - L1ME LINE L1 -5509 771 5 * 972 183 32 16 chr3 144152067 144152253 -83372325 - L1MD1 LINE L1 -415 5827 5639 691 112 0 0 chr3 144152293 144152382 -83372196 - 5S rRNA rRNA -31 90 2 253 170 94 75 chr3 144152388 144152494 -83372084 - HAL1 LINE L1 -1424 1083 976 379 240 74 0 chr3 144152577 144152698 -83371880 + L1ME1 LINE L1 6029 6158 -8 * 1090 285 114 49 chr3 144152689 144153366 -83371212 - HAL1 LINE L1 -1667 840 120 * 2412 237 16 58 chr3 144153362 144154152 -83370426 + L1M4 LINE L1 4472 5228 -918 233 146 37 12 chr3 144154292 144154374 -83370204 + (CA)n Simple_repeat Simple_repeat 2 85 0 553 58 79 31 chr3 144154385 144154734 -83369844 + (CA)n Simple_repeat Simple_repeat 1 365 0 182 107 80 13 chr3 144154757 144154832 -83369746 + (CA)n Simple_repeat Simple_repeat 1 80 0 509 77 77 18 chr3 144154856 144155025 -83369553 + (CA)n Simple_repeat Simple_repeat 1 179 0 255 79 69 40 chr3 144155110 144155211 -83369367 + (CA)n Simple_repeat Simple_repeat 2 105 0 5168 228 58 38 chr3 144156615 144156902 -83367676 + L1 LINE L1 2641 2921 -3225 1938 150 7 0 chr3 144156902 144157208 -83367370 + AluSx SINE Alu 1 308 -4 5168 228 58 38 chr3 144157208 144158551 -83366027 + L1 LINE L1 2921 4303 -1843 376 309 12 55 chr3 144159637 144159802 -83364776 + MIR SINE MIR 58 215 -47 714 183 0 0 chr3 144160806 144161067 -83363511 + (TG)n Simple_repeat Simple_repeat 1 261 0 521 185 6 0 chr3 144161112 144161285 -83363293 + (TG)n Simple_repeat Simple_repeat 1 174 0 440 258 105 22 chr3 144161403 144161670 -83362908 - LTR16C LTR ERVL -15 476 188 1921 116 17 34 chr3 144162198 144162490 -83362088 - MER1B DNA MER1_type 0 339 53 720 236 82 15 chr3 144162834 144163029 -83361549 - MER3 DNA MER1_type 0 209 2 2374 87 3 0 chr3 144163366 144163678 -83360900 + AluSq SINE Alu 1 313 0 1171 164 19 5 chr3 144163702 144163915 -83360663 + AluJb SINE Alu 86 301 -11 433 265 205 20 chr3 144163915 144164300 -83360278 + L1MD1 LINE L1 5599 6058 -184 553 250 49 14 chr3 144165612 144165756 -83358822 + MIR SINE MIR 111 259 -3 193 167 0 0 chr3 144166041 144166077 -83358501 - MIR SINE MIR -119 143 108 210 193 18 18 chr3 144166794 144166851 -83357727 + (CA)n Simple_repeat Simple_repeat 1 57 0 333 253 23 0 chr3 144168254 144168341 -83356237 + MIR SINE MIR 100 188 -74 479 256 112 60 chr3 144168350 144168635 -83355943 + L1MC4a LINE L1 5625 5924 -1884 410 321 159 25 chr3 144169553 144169634 -83354944 - L1ME3A LINE L1 -124 6046 5977 1802 111 0 4 chr3 144169634 144169887 -83354691 + AluSx SINE Alu 1 252 -60 410 321 159 25 chr3 144169887 144170132 -83354446 - L1ME3A LINE L1 -193 5977 5676 875 296 58 26 chr3 144171025 144171170 -83353408 - LTR16C LTR ERVL -15 476 337 1133 218 37 63 chr3 144171170 144171551 -83353027 - MLT1A2 LTR MaLR -3 371 1 875 296 58 26 chr3 144171551 144171787 -83352791 - LTR16C LTR ERVL -154 337 83 313 304 132 36 chr3 144171823 144172103 -83352475 + MLT1J LTR MaLR 108 414 -97 2694 143 7 28 chr3 144173507 144173941 -83350637 - MSTC LTR MaLR -3 425 1 255 268 0 0 chr3 144174144 144174301 -83350277 + (CA)n Simple_repeat Simple_repeat 2 158 0 254 271 0 14 chr3 144175247 144175317 -83349261 + MER5A DNA MER1_type 1 69 -120 23 33 0 0 chr3 144175480 144175510 -83349068 + GC_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr3 144175716 144175754 -83348824 + GC_rich Low_complexity Low_complexity 1 38 0 188 338 68 0 chr3 144176288 144176362 -83348216 + MIR SINE MIR 18 96 -166 1840 246 76 31 chr3 144177037 144177711 -83346867 + L1MB7 LINE L1 5466 6169 -15 313 163 52 20 chr3 144177817 144177970 -83346608 + (TG)n Simple_repeat Simple_repeat 1 158 0 211 127 36 36 chr3 144177974 144178029 -83346549 + (GTGTG)n Simple_repeat Simple_repeat 1 55 0 230 244 12 35 chr3 144178288 144178374 -83346204 + L1MC5 LINE L1 7849 7932 -29 293 95 22 6 chr3 144178596 144178662 -83345916 + L1MB3 LINE L1 5825 5893 -275 427 278 62 14 chr3 144179336 144179480 -83345098 - MIR SINE MIR -101 161 11 356 304 119 0 chr3 144179522 144179690 -83344888 + MIR SINE MIR 42 229 -33 219 338 42 42 chr3 144179826 144179968 -83344610 + MIR3 SINE MIR 43 184 -24 399 378 104 6 chr3 144180174 144180531 -83344047 + L2 LINE L2 2918 3309 -4 389 36 18 0 chr3 144180534 144180589 -83343989 + (TG)n Simple_repeat Simple_repeat 1 56 0 310 247 54 0 chr3 144180794 144180887 -83343691 + L2 LINE L2 3175 3272 -41 198 0 0 0 chr3 144183058 144183080 -83341498 + (TCTG)n Simple_repeat Simple_repeat 2 23 0 7736 212 47 10 chr3 144183259 144185933 -83338645 + L1MB7 LINE L1 3165 5932 -252 679 230 92 6 chr3 144186174 144186348 -83338230 - MER5A DNA MER1_type 0 189 1 190 216 0 148 chr3 144186348 144186419 -83338159 + L2 LINE L2 3256 3313 0 239 338 0 21 chr3 144187672 144187817 -83336761 + GA-rich Low_complexity Low_complexity 4 145 0 472 267 75 19 chr3 144187885 144188046 -83336532 - MIR SINE MIR -91 171 2 264 385 0 0 chr3 144189348 144189478 -83335100 + L2 LINE L2 2905 3034 -238 204 313 157 17 chr3 144189483 144189598 -83334980 + MIR3 SINE MIR 15 145 -63 631 250 13 48 chr3 144189798 144190026 -83334552 + MLT1K LTR MaLR 98 317 -271 237 219 31 16 chr3 144190456 144190520 -83334058 + L2 LINE L2 3193 3257 -56 351 0 0 0 chr3 144193879 144193918 -83330660 + (TG)n Simple_repeat Simple_repeat 2 40 0 1098 173 15 20 chr3 144194151 144194348 -83330230 - L1PB4 LINE L1 0 6156 5961 509 254 122 6 chr3 144194387 144194568 -83330010 + MIR SINE MIR 51 252 -10 360 248 61 15 chr3 144194571 144194769 -83329809 - MER113 DNA MER1_type? -295 226 20 279 294 213 22 chr3 144195192 144195464 -83329114 - L2 LINE L2 0 3313 2990 465 221 52 20 chr3 144195492 144195672 -83328906 - MLT1H1 LTR MaLR 0 555 379 189 231 220 22 chr3 144196083 144196174 -83328404 - L2 LINE L2 -402 2912 2804 846 225 41 18 chr3 144196345 144196563 -83328015 - MIR SINE MIR 0 262 40 1932 115 54 0 chr3 144196595 144196891 -83327687 - AluSq SINE Alu -1 312 1 518 243 92 0 chr3 144196933 144197085 -83327493 - L1MD2 LINE L1 -4 6355 6190 307 242 44 22 chr3 144197092 144197183 -83327395 + Charlie8 DNA MER1_type 62 154 -2263 191 222 74 0 chr3 144197498 144197552 -83327026 + L2 LINE L2 3225 3282 -31 2998 213 59 35 chr3 144197665 144198458 -83326120 - MER21B LTR ERV1 -30 833 22 401 216 24 64 chr3 144198629 144198754 -83325824 + MIR SINE MIR 33 152 -110 247 278 181 23 chr3 144198972 144199105 -83325473 + MIR SINE MIR 39 192 -70 184 333 39 13 chr3 144201527 144201605 -83322973 + MIR SINE MIR 117 196 -66 480 214 107 18 chr3 144202737 144202849 -83321729 - MIR SINE MIR -32 230 109 306 0 0 0 chr3 144203219 144203253 -83321325 + (CA)n Simple_repeat Simple_repeat 2 35 0 695 195 0 0 chr3 144203379 144203507 -83321071 - MLT1D LTR MaLR 0 505 378 1757 145 21 3 chr3 144203664 144203946 -83320632 - AluJo SINE Alu -25 287 1 557 304 71 55 chr3 144204328 144204581 -83319997 + HAL1b LINE L1 145 401 -947 252 252 77 56 chr3 144204933 144205076 -83319502 - MER112 DNA MER1_type -15 245 100 192 211 53 0 chr3 144205399 144205456 -83319122 - L2 LINE L2 -213 3059 3000 464 227 59 8 chr3 144206118 144206237 -83318341 - MER5A DNA MER1_type -4 185 61 215 206 111 0 chr3 144206337 144206400 -83318178 + L2 LINE L2 3243 3312 -1 492 215 59 0 chr3 144206876 144207011 -83317567 - L1MD3 LINE L1 -8 7987 7845 267 168 137 0 chr3 144207027 144207122 -83317456 - Charlie5 DNA MER1_type -19 2593 2486 1140 125 0 17 chr3 144207122 144207298 -83317280 - AluJb SINE Alu -2 310 138 522 118 20 0 chr3 144207298 144207400 -83317178 - Charlie5 DNA MER1_type -156 2456 2353 543 233 57 23 chr3 144209128 144209304 -83315274 - L1M3e LINE L1 -6846 184 3 447 255 209 0 chr3 144209438 144209591 -83314987 - MER5A DNA MER1_type -1 188 4 2436 64 3 13 chr3 144209639 144209953 -83314625 + AluY SINE Alu 1 311 0 2276 189 60 19 chr3 144209969 144210499 -83314079 + L1MB7 LINE L1 5628 6179 -5 275 217 0 43 chr3 144211290 144211359 -83313219 - L2 LINE L2 -22 3250 3185 4522 33 0 80 chr3 144213682 144214437 -83310141 + L1PA2 LINE L1 5458 6152 -3 539 234 55 0 chr3 144214552 144214680 -83309898 - MIR SINE MIR -7 255 121 235 288 144 8 chr3 144215504 144215622 -83308956 + MIR SINE MIR 16 149 -59 9988 60 8 0 chr3 144216360 144217814 -83306764 + L1P LINE L1 3689 5154 -992 338 328 17 17 chr3 144221659 144221839 -83302739 + L1M4c LINE L1 1025 1204 -5833 2281 189 45 13 chr3 144221853 144222545 -83302033 + L1M4c LINE L1 1721 2438 -4599 941 198 57 0 chr3 144222559 144222822 -83301756 - L1MA4 LINE L1 0 6300 6023 1463 259 36 4 chr3 144222826 144223327 -83301251 + L1M4c LINE L1 2432 2948 -4159 1253 193 72 71 chr3 144223340 144223925 -83300653 + L1M4c LINE L1 2824 3407 -3699 2226 124 0 6 chr3 144223925 144224239 -83300339 - AluSx SINE Alu 0 312 1 1253 193 72 71 chr3 144224239 144224437 -83300141 + L1M4c LINE L1 3407 4744 -2362 * 2621 168 6 16 chr3 144224435 144224933 -83299645 - L1MC1 LINE L1 -74 6259 5767 2174 108 28 0 chr3 144224933 144225258 -83299320 + MSTA LTR MaLR 1 334 -94 1653 172 33 13 chr3 144225259 144225640 -83298938 + L1ME2 LINE L1 5399 5943 -221 4836 224 37 30 chr3 144225712 144226286 -83298292 - L1M4 LINE L1 -1306 4840 4271 2166 113 3 3 chr3 144226286 144226595 -83297983 - AluSc SINE Alu 0 309 1 1703 173 28 0 chr3 144226595 144226884 -83297694 - AluJo SINE Alu -15 297 1 4836 224 37 30 chr3 144226884 144227702 -83296876 - L1M4 LINE L1 -1874 4272 3438 642 296 132 14 chr3 144228127 144228475 -83296103 + L2 LINE L2 2919 3307 -6 236 257 219 19 chr3 144230770 144230805 -83293773 - MIR SINE MIR -115 147 120 503 292 87 27 chr3 144230805 144230990 -83293588 - MER91A DNA MER1_type 0 196 1 236 257 219 19 chr3 144230990 144231059 -83293519 - MIR SINE MIR -142 120 22 682 290 50 19 chr3 144231591 144231761 -83292817 + L1M4 LINE L1 5033 5196 -950 2247 104 0 3 chr3 144231761 144232070 -83292508 + AluSp SINE Alu 1 308 -5 682 290 50 19 chr3 144232070 144232220 -83292358 + L1M4 LINE L1 5196 5363 -783 1493 202 106 44 chr3 144232304 144232755 -83291823 + MER74A LTR ERVL 20 498 -60 204 226 57 0 chr3 144233710 144233763 -83290815 + MIR SINE MIR 89 144 -118 426 288 88 18 chr3 144236673 144236843 -83287735 - MIR SINE MIR -61 201 20 1522 158 107 16 chr3 144236918 144237228 -83287350 - MER44D DNA MER2_type 0 609 2 10883 77 0 0 chr3 144239601 144241852 -83282726 + L1PA6 LINE L1 3912 6154 0 620 300 50 0 chr3 144241855 144242035 -83282543 - MLT1G1 LTR MaLR -406 189 1 541 292 137 62 chr3 144242046 144242427 -83282151 + HAL1 LINE L1 1544 1966 -541 2079 138 0 22 chr3 144242427 144242747 -83281831 + AluSq SINE Alu 1 313 0 541 292 137 62 chr3 144242747 144242817 -83281761 + HAL1 LINE L1 1966 2029 -478 352 289 28 66 chr3 144243064 144243192 -83281386 + L1ME3A LINE L1 4770 4901 -1245 1865 149 14 3 chr3 144243192 144243488 -83281090 - AluSx SINE Alu -7 305 7 352 289 28 66 chr3 144243488 144243646 -83280932 + L1ME3A LINE L1 4901 5045 -1101 1715 289 44 8 chr3 144243648 144244357 -83280221 + L1ME3A LINE L1 5232 5967 -203 2793 6 0 0 chr3 144244369 144244680 -83279898 + AluYa5 SINE Alu 1 311 0 2017 98 30 13 chr3 144244896 144245201 -83279377 + AluY SINE Alu 1 310 -1 1602 140 0 60 chr3 144245439 144245739 -83278839 + AluJb SINE Alu 17 298 -14 2305 84 10 0 chr3 144245805 144246113 -83278465 + AluSq SINE Alu 3 313 0 211 319 164 9 chr3 144246814 144246930 -83277648 - L2 LINE L2 0 3272 3139 230 189 113 75 chr3 144247251 144247357 -83277221 - L1ME4a LINE L1 -4 6117 6008 201 39 0 0 chr3 144247937 144247963 -83276615 + (TC)n Simple_repeat Simple_repeat 2 27 0 364 294 171 0 chr3 144248304 144248491 -83276087 + L2 LINE L2 1778 1996 -1318 593 210 108 16 chr3 144248493 144248679 -83275899 - L1MB7 LINE L1 0 6184 5982 326 331 97 0 chr3 144249549 144249703 -83274875 + LTR67 LTR ERVL 389 557 0 291 300 0 0 chr3 144250301 144250381 -83274197 + MIR SINE MIR 168 247 -15 202 337 56 0 chr3 144250642 144250731 -83273847 - L2 LINE L2 -468 2846 2753 194 242 0 16 chr3 144250773 144250835 -83273743 + (CA)n Simple_repeat Simple_repeat 2 62 0 381 270 27 27 chr3 144250839 144250987 -83273591 - MLT1J2 LTR MaLR -43 407 260 692 246 74 6 chr3 144251426 144251601 -83272977 - MER5A DNA MER1_type 0 189 3 185 301 214 0 chr3 144252349 144252452 -83272126 + MIR SINE MIR 17 141 -67 616 265 137 26 chr3 144252511 144252862 -83271716 - L2 LINE L2 -76 3237 2848 2411 212 13 7 chr3 144253254 144253716 -83270862 - MLT1C LTR MaLR -2 465 1 486 310 30 37 chr3 144254099 144254370 -83270208 - L1MC4a LINE L1 -1834 5974 5706 321 260 42 0 chr3 144254975 144255071 -83269507 - L2 LINE L2 -336 2977 2878 197 244 0 0 chr3 144255632 144255673 -83268905 - MER5A DNA MER1_type -36 153 113 313 314 65 0 chr3 144255856 144255980 -83268598 - L2 LINE L2 -3 3269 3138 438 314 43 22 chr3 144256026 144256303 -83268275 + L2 LINE L2 2907 3189 -124 1169 264 22 19 chr3 144256370 144256684 -83267894 + L1MC/D LINE L1 4051 4365 -1781 823 207 125 54 chr3 144256712 144257064 -83267514 + L1MB4 LINE L1 35 411 -5973 4628 168 18 24 chr3 144257170 144257537 -83267041 + L1MB4 LINE L1 5460 5828 -588 2209 68 4 0 chr3 144257537 144257842 -83266736 + AluY SINE Alu 1 306 0 4628 168 18 24 chr3 144257842 144258431 -83266147 + L1MB4 LINE L1 5828 6416 0 396 0 0 0 chr3 144258463 144258507 -83266071 + (TA)n Simple_repeat Simple_repeat 1 44 0 259 275 133 8 chr3 144258639 144258759 -83265819 - L2 LINE L2 -245 3068 2934 180 273 200 18 chr3 144259085 144259195 -83265383 + L2 LINE L2 3159 3288 -25 2096 201 61 33 chr3 144259302 144259843 -83264735 - MER74A LTR ERVL 0 558 3 352 297 141 43 chr3 144259906 144260394 -83264184 - L2 LINE L2 -670 2644 2109 1935 141 13 0 chr3 144260440 144260744 -83263834 - AluSx SINE Alu -4 308 1 247 271 116 26 chr3 144261107 144261262 -83263316 + L1MC/D LINE L1 5297 5465 -2343 2144 182 42 14 chr3 144261311 144261744 -83262834 - LTR24B LTR ERV1 -7 569 125 2127 87 14 3 chr3 144261744 144262030 -83262548 - AluSc SINE Alu -20 289 1 1283 178 140 3 chr3 144262057 144262375 -83262203 - L1MB3 LINE L1 -7 6176 5813 1995 131 0 0 chr3 144262443 144262749 -83261829 + AluSx SINE Alu 1 306 0 873 164 0 0 chr3 144262846 144262992 -83261586 - AluJb SINE Alu -8 304 159 346 276 23 133 chr3 144264454 144264853 -83259725 - MLT1J LTR MaLR -40 471 117 280 322 73 38 chr3 144265118 144265379 -83259199 - L1MC5 LINE L1 -32 7929 7660 1804 144 3 20 chr3 144265853 144266151 -83258427 - AluJb SINE Alu -19 293 1 1371 280 145 21 chr3 144266151 144266981 -83257597 - L1ME2 LINE L1 -56 6177 5209 2183 99 3 0 chr3 144266981 144267273 -83257305 + AluSq SINE Alu 1 293 -20 1371 280 145 21 chr3 144267273 144267439 -83257139 - L1ME2 LINE L1 -1024 5209 5065 906 202 16 0 chr3 144267554 144267742 -83256836 - AluJb SINE Alu -2 310 120 252 291 35 35 chr3 144267742 144267828 -83256750 - L1ME2 LINE L1 -1992 4223 4138 1129 216 57 12 chr3 144267886 144268131 -83256447 - MLT1D LTR MaLR 0 505 250 4367 204 21 33 chr3 144268133 144269265 -83255313 - L1 LINE L1 -2178 3968 2850 1050 225 21 4 chr3 144269271 144269507 -83255071 - MLT1D LTR MaLR -258 247 8 718 251 15 0 chr3 144269515 144269714 -83254864 - L1ME2 LINE L1 -2139 4076 3875 488 288 105 0 chr3 144269839 144270024 -83254554 + MIR SINE MIR 56 258 -4 295 308 93 0 chr3 144270913 144271020 -83253558 - MLT1K LTR MaLR -14 574 458 34 55 0 0 chr3 144271748 144271803 -83252775 + GC_rich Low_complexity Low_complexity 1 55 0 76 63 0 0 chr3 144271868 144271995 -83252583 + GC_rich Low_complexity Low_complexity 1 127 0 498 182 10 10 chr3 144272030 144272129 -83252449 + L1PA2 LINE L1 6054 6152 -3 531 234 55 0 chr3 144272244 144272372 -83252206 - MIR SINE MIR -7 255 121 526 264 76 21 chr3 144274692 144275126 -83249452 + MLT1J LTR MaLR 8 511 0 193 299 196 0 chr3 144275557 144275664 -83248914 - MIR SINE MIR -132 130 3 5241 151 14 19 chr3 144278365 144279344 -83245234 - L1PB2 LINE L1 0 6151 5169 225 0 0 0 chr3 144279344 144279369 -83245209 + (TTA)n Simple_repeat Simple_repeat 1 25 0 5241 151 14 19 chr3 144279369 144280129 -83244449 - L1PB2 LINE L1 -982 5169 4416 288 0 0 0 chr3 144280129 144280161 -83244417 + (TATG)n Simple_repeat Simple_repeat 2 33 0 5241 151 14 19 chr3 144280161 144280306 -83244272 - L1PB2 LINE L1 -1735 4416 4272 1320 175 10 38 chr3 144280319 144280392 -83244186 + MLT1B LTR MaLR 106 179 -211 2619 49 3 0 chr3 144280392 144280697 -83243881 + AluY SINE Alu 2 307 -4 1320 175 10 38 chr3 144280697 144280914 -83243664 + MLT1B LTR MaLR 179 388 -2 3246 230 41 25 chr3 144282464 144282526 -83242052 - L1ME2 LINE L1 -2976 3239 3180 2275 110 3 0 chr3 144282526 144282836 -83241742 - AluSq SINE Alu 0 313 3 3246 230 41 25 chr3 144282836 144284047 -83240531 - L1ME2 LINE L1 -3035 3180 1988 1537 277 91 22 chr3 144284060 144284888 -83239690 - L1ME2 LINE L1 -4499 1897 1013 1738 275 170 22 chr3 144284889 144285706 -83238872 - L1ME2 LINE L1 -5424 972 35 850 267 181 3 chr3 144285849 144286220 -83238358 + MLT1J LTR MaLR 73 509 -2 426 222 90 21 chr3 144286279 144286423 -83238155 - MLT1L LTR MaLR -152 463 310 296 228 177 0 chr3 144286494 144286573 -83238005 - MLT1J2 LTR MaLR -309 202 72 269 360 0 10 chr3 144287490 144287590 -83236988 + (CA)n Simple_repeat Simple_repeat 2 100 0 404 280 83 5 chr3 144288572 144288765 -83235813 + Charlie8 DNA MER1_type 86 293 -2124 395 323 118 7 chr3 144289047 144289344 -83235234 - LTR16A LTR ERVL -15 435 106 2255 221 54 74 chr3 144290097 144290862 -83233716 + L1MC3 LINE L1 6225 6975 -810 733 223 169 35 chr3 144290862 144291181 -83233397 - MLT1A1 LTR MaLR -3 362 1 2255 221 54 74 chr3 144291181 144291214 -83233364 + L1MC3 LINE L1 6975 7007 -778 2129 148 37 11 chr3 144291418 144291795 -83232783 - MLT1B LTR MaLR -1 389 3 1818 168 14 3 chr3 144293111 144293397 -83231181 - AluJb SINE Alu -23 289 1 1298 226 83 45 chr3 144293611 144293901 -83230677 - MLT1C LTR MaLR -6 461 147 1687 203 10 54 chr3 144293901 144294309 -83230269 + MLT1B LTR MaLR 1 390 0 1298 226 83 45 chr3 144294309 144294461 -83230117 - MLT1C LTR MaLR -320 147 2 398 238 57 9 chr3 144294637 144294807 -83229771 - MLT1H LTR MaLR 0 549 382 830 207 26 16 chr3 144294833 144295026 -83229552 + MER58A DNA MER1_type 30 224 0 260 262 48 40 chr3 144295144 144295270 -83229308 - MLT1H LTR MaLR -409 140 14 1772 204 60 5 chr3 144295835 144296237 -83228341 - MLT1C LTR MaLR -6 461 38 211 259 247 12 chr3 144296589 144296670 -83227908 - MIR SINE MIR -78 130 31 661 204 102 21 chr3 144296904 144297090 -83227488 + MER58C DNA MER1_type 1 201 -14 247 280 0 63 chr3 144297107 144297250 -83227328 + G-rich Low_complexity Low_complexity 6 139 0 210 300 0 72 chr3 144297510 144297690 -83226888 + G-rich Low_complexity Low_complexity 4 170 0 4042 149 32 25 chr3 144298172 144298895 -83225683 + MER50 LTR ERV1 7 734 0 5110 130 57 5 chr3 144299619 144300587 -83223991 - L1MC1 LINE L1 0 6333 5263 373 244 124 109 chr3 144301008 144301274 -83223304 - MER102a DNA MER1_type -21 309 40 1785 196 72 28 chr3 144303107 144303576 -83221002 - MLT1D LTR MaLR 0 505 16 246 333 11 11 chr3 144303698 144303785 -83220793 - L2 LINE L2 -50 3222 3136 326 365 0 26 chr3 144303819 144303934 -83220644 + L1MC/D LINE L1 5554 5665 -2143 25 31 0 0 chr3 144303942 144303974 -83220604 + AT_rich Low_complexity Low_complexity 1 32 0 386 188 19 201 chr3 144304015 144304324 -83220254 - L1MC4 LINE L1 0 8322 8070 359 224 3 50 chr3 144304326 144304448 -83220130 - L1MC4 LINE L1 -1340 6982 1995 1399 124 9 5 chr3 144304459 144304669 -83219909 - L1PA8A LINE L1 -9 6122 5912 295 268 37 32 chr3 144304751 144304941 -83219637 - L1PA8A LINE L1 -228 5903 5713 449 253 12 47 chr3 144305210 144305380 -83219198 - MLT1D LTR MaLR -326 179 16 246 333 11 11 chr3 144305502 144305589 -83218989 - L2 LINE L2 -50 3222 3136 326 365 0 26 chr3 144305623 144305738 -83218840 + L1MC/D LINE L1 5554 5665 -2143 25 31 0 0 chr3 144305746 144305778 -83218800 + AT_rich Low_complexity Low_complexity 1 32 0 729 209 19 202 chr3 144305819 144306194 -83218384 - L1MC4 LINE L1 0 8042 7897 4960 63 54 86 chr3 144306194 144306971 -83217607 - L1PA8 LINE L1 -10 6162 5411 729 209 19 202 chr3 144306971 144307416 -83217162 - L1MC4 LINE L1 -145 7897 7372 41149 30 29 1 chr3 144307466 144313452 -83211126 - L1HS LINE L1 0 6155 1 345 305 64 64 chr3 144314167 144314403 -83210175 + L1 LINE L1 4881 5116 -1030 227 330 52 31 chr3 144314484 144314675 -83209903 + L1MC/D LINE L1 4127 4321 -1825 256 255 10 69 chr3 144314697 144314799 -83209779 - MLT1H LTR MaLR 0 549 454 347 260 47 0 chr3 144315298 144315425 -83209153 + L1MC/D LINE L1 4525 4657 -1489 962 169 0 33 chr3 144315538 144315721 -83208857 - FRAM SINE Alu 0 176 1 434 311 117 41 chr3 144316105 144316436 -83208142 + L1MC/D LINE L1 5256 5637 -2171 4773 104 1 3 chr3 144316436 144317116 -83207462 + L1PB1 LINE L1 5465 6143 -8 434 311 117 41 chr3 144317116 144317273 -83207305 + L1MC/D LINE L1 5637 5781 -2027 638 291 117 15 chr3 144317505 144317838 -83206740 + L2 LINE L2 2519 2885 -429 1072 256 52 0 chr3 144317844 144318168 -83206410 + L1MD3 LINE L1 7651 7991 -4 211 156 66 82 chr3 144318168 144318290 -83206288 + (TTAA)n Simple_repeat Simple_repeat 1 120 0 284 289 27 53 chr3 144318337 144318524 -83206054 + L2 LINE L2 3081 3262 -51 4940 28 2 0 chr3 144318651 144319258 -83205320 + L1P LINE L1 4558 5165 -981 210 312 9 37 chr3 144319761 144319870 -83204708 + G-rich Low_complexity Low_complexity 4 109 0 269 313 9 17 chr3 144319938 144320053 -83204525 + GA-rich Low_complexity Low_complexity 3 116 0 198 0 0 0 chr3 144320053 144320075 -83204503 + (C)n Simple_repeat Simple_repeat 1 22 0 1408 137 141 0 chr3 144320985 144321241 -83203337 - AluJo SINE Alu -15 297 6 759 315 71 55 chr3 144321862 144322300 -83202278 + L2 LINE L2 2828 3272 0 315 267 0 0 chr3 144322358 144322504 -83202074 + (CA)n Simple_repeat Simple_repeat 1 146 0 199 318 73 0 chr3 144322786 144322896 -83201682 - MIR3 SINE MIR -52 156 39 201 237 0 0 chr3 144323345 144323383 -83201195 + MIR SINE MIR 109 146 -62 449 309 58 5 chr3 144323722 144323910 -83200668 + MIR SINE MIR 64 261 -1 542 273 99 0 chr3 144324049 144324210 -83200368 - MER91B DNA MER1_type -10 180 4 235 303 84 39 chr3 144324249 144324404 -83200174 + MIR SINE MIR 9 170 -92 641 290 98 19 chr3 144324999 144325230 -83199348 + MIR SINE MIR 17 261 -1 441 314 71 12 chr3 144325355 144325524 -83199054 + MIR SINE MIR 21 199 -63 214 261 130 9 chr3 144325550 144325665 -83198913 - L2 LINE L2 -334 2979 2851 209 256 0 0 chr3 144325747 144325790 -83198788 + L3 LINE CR1 1418 1460 -117 229 225 0 0 chr3 144325828 144325868 -83198710 + MIR SINE MIR 210 249 -13 271 318 61 23 chr3 144326908 144327040 -83197538 - MIR3 SINE MIR -60 148 12 382 331 74 7 chr3 144328222 144328370 -83196208 + MIR SINE MIR 18 175 -87 740 169 45 11 chr3 144330397 144330574 -83194004 + MER53 DNA DNA 1 183 -6 186 377 0 0 chr3 144331018 144331087 -83193491 + L2 LINE L2 3235 3303 -10 246 298 106 19 chr3 144331374 144331478 -83193100 + MIR3 SINE MIR 85 197 -11 448 362 34 19 chr3 144331760 144331967 -83192611 + MIR SINE MIR 50 259 -3 389 245 65 22 chr3 144332082 144332221 -83192357 + L1MC5 LINE L1 7610 7754 -207 216 301 182 59 chr3 144332478 144332681 -83191897 + L2 LINE L2 3086 3313 0 27 49 0 0 chr3 144334139 144334180 -83190398 + GC_rich Low_complexity Low_complexity 1 41 0 22 88 0 0 chr3 144334209 144334266 -83190312 + GC_rich Low_complexity Low_complexity 1 57 0 22 35 0 0 chr3 144334278 144334307 -83190271 + GC_rich Low_complexity Low_complexity 1 29 0 22 88 0 0 chr3 144334794 144334851 -83189727 + GC_rich Low_complexity Low_complexity 1 57 0 23 33 0 0 chr3 144334863 144334893 -83189685 + GC_rich Low_complexity Low_complexity 1 30 0 229 85 0 43 chr3 144335069 144335116 -83189462 + (CCCCG)n Simple_repeat Simple_repeat 4 48 0 233 244 52 61 chr3 144335860 144335975 -83188603 - MIR SINE MIR -65 143 30 503 246 15 23 chr3 144336601 144336731 -83187847 + L2 LINE L2 2681 2809 -505 442 269 11 77 chr3 144337027 144337209 -83187369 - HAL1b LINE L1 -971 377 208 862 289 80 3 chr3 144337211 144337498 -83187080 + L2 LINE L2 2968 3276 -37 495 273 16 48 chr3 144338571 144338758 -83185820 + MIR SINE MIR 42 222 -40 1616 157 11 25 chr3 144339374 144339704 -83184874 + AluJo SINE Alu 1 326 0 412 292 91 5 chr3 144339771 144339980 -83184598 + LTR33 LTR ERVL 60 286 -235 798 255 43 8 chr3 144340296 144340551 -83184027 - HAL1 LINE L1 -772 1735 1472 1889 160 14 22 chr3 144340553 144340756 -83183822 + MLT1A1 LTR MaLR 1 201 -164 1831 152 50 141 chr3 144340756 144341231 -83183347 - MSTB1 LTR MaLR 0 432 1 1889 160 14 22 chr3 144341231 144341395 -83183183 + MLT1A1 LTR MaLR 201 365 0 309 241 65 35 chr3 144341401 144341600 -83182978 - HAL1 LINE L1 -1040 1467 1263 370 300 81 36 chr3 144342347 144342570 -83182008 - MLT1K LTR MaLR -310 278 46 193 387 102 7 chr3 144342579 144342716 -83181862 - MIR3 SINE MIR -34 174 25 239 220 44 55 chr3 144343904 144343983 -83180595 - MLT1J LTR MaLR -147 364 285 324 0 0 0 chr3 144343983 144344019 -83180559 + (CA)n Simple_repeat Simple_repeat 2 37 0 239 220 44 55 chr3 144344019 144344030 -83180548 - MLT1J LTR MaLR -226 285 275 289 282 73 9 chr3 144344131 144344241 -83180337 + MIR SINE MIR 29 145 -63 184 238 24 0 chr3 144344451 144344493 -83180085 - MIR SINE MIR -1 261 219 323 330 52 0 chr3 144344498 144344613 -83179965 - MIR SINE MIR -2 260 140 229 355 47 6 chr3 144344621 144344793 -83179785 + HAL1 LINE L1 1002 1180 -1327 257 222 173 0 chr3 144345281 144345362 -83179216 + L1ME4a LINE L1 5382 5476 -645 356 315 46 9 chr3 144345434 144345653 -83178925 + L1ME4a LINE L1 5619 5845 -276 288 213 35 92 chr3 144345706 144345880 -83178698 + L1ME4a LINE L1 5957 6120 -1 2356 57 3 10 chr3 144346103 144346402 -83178176 + AluY SINE Alu 1 297 -14 2725 119 25 11 chr3 144346402 144346832 -83177746 - L1MB2 LINE L1 -11 6160 5725 387 328 46 32 chr3 144346847 144347323 -83177255 - L1ME LINE L1 -247 5874 5391 423 287 82 0 chr3 144348528 144348650 -83175928 - L2 LINE L2 -2 3311 3180 330 318 32 0 chr3 144349288 144349414 -83175164 - L2 LINE L2 -514 2800 2671 2080 200 55 0 chr3 144349424 144349893 -83174685 + L1MB3 LINE L1 5687 6181 -2 244 207 99 58 chr3 144350107 144350228 -83174350 - LTR33 LTR ERVL -281 240 115 195 314 113 75 chr3 144351902 144352061 -83172517 - MER5A DNA MER1_type -22 167 3 * 508 293 172 38 chr3 144352027 144352654 -83171924 - L2 LINE L2 0 3313 2600 806 303 10 0 chr3 144352723 144352931 -83171647 - MIR SINE MIR -35 227 18 1778 117 53 7 chr3 144352949 144353232 -83171346 + AluY SINE Alu 5 300 -11 235 288 144 8 chr3 144353731 144353849 -83170729 + MIR SINE MIR 16 149 -59 291 386 38 11 chr3 144354611 144354795 -83169783 + L2 LINE L2 2175 2363 -951 1985 134 3 7 chr3 144355412 144355717 -83168861 + AluSx SINE Alu 1 304 -8 1232 242 114 16 chr3 144355870 144356299 -83168279 + MLT1H LTR MaLR 75 545 -4 496 302 36 0 chr3 144356596 144356735 -83167843 + L2 LINE L2 3123 3266 -6 688 285 155 42 chr3 144356921 144357221 -83167357 + L2 LINE L2 2415 2680 -633 1577 183 33 7 chr3 144357221 144357522 -83167056 + AluJo SINE Alu 1 309 -3 688 285 155 42 chr3 144357522 144357829 -83166749 + L2 LINE L2 2680 3088 -225 185 260 65 39 chr3 144357892 144357969 -83166609 + L2 LINE L2 3181 3259 -54 2510 175 78 31 chr3 144358765 144359251 -83165327 - LTR64 LTR ERVK 0 513 5 921 160 93 0 chr3 144359261 144359411 -83165167 - FRAM SINE Alu -2 164 1 1276 247 92 8 chr3 144359532 144359924 -83164654 - MLT1G1 LTR MaLR -1 594 170 3365 75 8 2 chr3 144359924 144360431 -83164147 + L1P LINE L1 3478 3987 -2159 1662 171 67 0 chr3 144360531 144360859 -83163719 + L1MB5 LINE L1 5817 6166 -8 503 158 105 0 chr3 144360891 144361005 -83163573 + L1MC4 LINE L1 6867 6992 -1050 875 239 80 8 chr3 144361015 144361266 -83163312 + L1ME1 LINE L1 5801 6069 -97 344 211 56 94 chr3 144364880 144365060 -83159518 - LTR33 LTR ERVL -348 173 1 242 317 126 6 chr3 144365524 144365691 -83158887 - HAL1 LINE L1 -204 2303 2117 267 281 10 10 chr3 144365743 144365839 -83158739 - HAL1 LINE L1 -1806 701 606 247 329 102 0 chr3 144366058 144366195 -83158383 - HAL1 LINE L1 -2344 163 13 2028 90 173 10 chr3 144366390 144366776 -83157802 - MER4C LTR ERV1 -11 454 6 832 147 7 7 chr3 144366776 144366926 -83157652 + MER4B LTR ERV1 1 150 -460 * 3292 151 53 41 chr3 144366923 144367626 -83156952 - MER50 LTR ERV1 -23 711 1 1826 114 107 59 chr3 144367627 144368070 -83156508 + MER4B LTR ERV1 144 903 0 2292 91 3 0 chr3 144368164 144368462 -83156116 + AluSp SINE Alu 1 299 -14 4893 219 49 24 chr3 144368646 144369616 -83154962 + L1M4 LINE L1 3889 4924 -1260 2436 66 0 3 chr3 144369616 144369921 -83154657 - AluY SINE Alu -7 304 1 4893 219 49 24 chr3 144369921 144370544 -83154034 + L1M4 LINE L1 4924 5530 -654 1599 98 0 0 chr3 144370546 144370751 -83153827 - AluSg SINE Alu -105 205 1 551 265 43 37 chr3 144370941 144371103 -83153475 - L2 LINE L2 0 3272 3110 380 341 165 0 chr3 144371325 144371507 -83153071 + MIR SINE MIR 51 262 0 390 209 67 15 chr3 144371861 144371995 -83152583 - MER20 DNA MER1_type -47 172 32 368 293 66 6 chr3 144372491 144372658 -83151920 + MIR SINE MIR 12 188 -74 533 256 135 42 chr3 144373262 144373477 -83151101 + MIR SINE MIR 28 262 0 249 295 38 88 chr3 144373841 144374102 -83150476 + L1MCc LINE L1 34 281 -6142 254 313 18 55 chr3 144374480 144374643 -83149935 + L1MCc LINE L1 1132 1288 -5135 1092 301 59 44 chr3 144374782 144375699 -83148879 + L1MCc LINE L1 1512 2442 -4680 405 246 66 25 chr3 144379758 144379880 -83144698 - MIR SINE MIR -98 164 38 408 307 58 15 chr3 144381911 144382116 -83142462 + MIR SINE MIR 14 227 -35 524 79 45 0 chr3 144382827 144382916 -83141662 - Tigger1 DNA MER2_type -124 2294 2202 * 620 154 123 0 chr3 144382914 144383044 -83141534 - Tigger1 DNA MER2_type -2271 147 2 937 220 136 19 chr3 144383047 144383415 -83141163 - Charlie2 DNA MER1_type -303 2559 2149 1161 255 165 51 chr3 144383454 144383644 -83140934 - Charlie2a DNA MER1_type -1219 1643 1476 2407 77 0 0 chr3 144383644 144383954 -83140624 + AluY SINE Alu 1 310 -1 1161 255 165 51 chr3 144383954 144385101 -83139477 - Charlie2a DNA MER1_type -1386 1476 93 197 322 0 58 chr3 144385742 144385829 -83138749 + MIR SINE MIR 111 192 -70 264 159 0 0 chr3 144386017 144386061 -83138517 - MER105 DNA DNA -45 159 116 598 217 65 69 chr3 144387345 144387562 -83137016 + MIR SINE MIR 31 246 -16 182 397 0 0 chr3 144387653 144387716 -83136862 - L2 LINE L2 -2 3311 3249 421 277 149 17 chr3 144387993 144388282 -83136296 - LTR33A LTR ERVL -128 395 69 826 188 0 0 chr3 144388620 144388753 -83135825 - FLAM_A SINE Alu 0 133 1 380 279 54 16 chr3 144388773 144388902 -83135676 - MIR SINE MIR -40 222 89 320 330 85 6 chr3 144390756 144390932 -83133646 - L1ME LINE L1 -370 5751 5562 278 282 51 26 chr3 144391203 144391320 -83133258 + MIR SINE MIR 88 207 -55 298 283 71 0 chr3 144391745 144391844 -83132734 + L2 LINE L2 2470 2575 -739 430 381 63 15 chr3 144391904 144392131 -83132447 - L1ME LINE L1 -2214 3932 3689 1618 144 18 7 chr3 144392131 144392408 -83132170 - AluJo SINE Alu -10 302 23 430 381 63 15 chr3 144392408 144392450 -83132128 - L1ME LINE L1 -2457 3689 3650 247 267 52 69 chr3 144392696 144392812 -83131766 + Charlie8 DNA MER1_type 11 124 -2293 227 299 103 9 chr3 144392935 144393042 -83131536 - MIR SINE MIR -72 190 74 1191 91 0 28 chr3 144393080 144393256 -83131322 - AluSp SINE Alu -6 307 137 330 276 58 47 chr3 144393294 144393454 -83131124 + L1MC4 LINE L1 1930 6983 -1339 451 249 90 23 chr3 144394492 144394669 -83129909 + MER46C DNA MER2_type 1 189 -149 1326 246 131 33 chr3 144394741 144395108 -83129470 + L1MD3 LINE L1 6636 7076 -919 2290 55 13 23 chr3 144395108 144395415 -83129163 + AluY SINE Alu 1 304 -7 1326 246 131 33 chr3 144395415 144395597 -83128981 + L1MD3 LINE L1 7076 7239 -756 1743 224 110 20 chr3 144395623 144396122 -83128456 + MER77 LTR ERV1 58 601 -4 829 291 132 4 chr3 144396175 144396670 -83127908 + L1MD3 LINE L1 7266 7914 -81 973 272 127 32 chr3 144397039 144397611 -83126967 + L1MC5 LINE L1 7068 7705 -256 2296 91 0 25 chr3 144397611 144397930 -83126648 - AluSx SINE Alu -1 311 1 973 272 127 32 chr3 144397930 144397981 -83126597 + L1MC5 LINE L1 7705 7750 -211 223 296 49 25 chr3 144399798 144399879 -83124699 - MIR SINE MIR -90 118 36 180 97 0 0 chr3 144400350 144400381 -83124197 + (TTAAA)n Simple_repeat Simple_repeat 1 31 0 321 314 14 43 chr3 144400660 144400800 -83123778 - MIR3 SINE MIR -10 198 63 243 293 49 73 chr3 144401876 144401999 -83122579 - MIR SINE MIR -122 140 21 235 294 71 0 chr3 144402354 144402439 -83122139 + L2 LINE L2 3141 3231 -41 2269 80 0 3 chr3 144402456 144402758 -83121820 - AluY SINE Alu -7 304 4 25 0 0 0 chr3 144403204 144403229 -83121349 + AT_rich Low_complexity Low_complexity 1 25 0 1782 171 7 0 chr3 144405061 144405354 -83119224 + AluJo SINE Alu 1 295 -17 280 293 0 50 chr3 144406103 144406202 -83118376 - MIR3 SINE MIR -5 203 110 446 294 98 0 chr3 144406666 144406809 -83117769 + MIR SINE MIR 46 202 -60 659 262 79 15 chr3 144408403 144408605 -83115973 - MIR SINE MIR -46 216 2 266 338 142 5 chr3 144408606 144408810 -83115768 + L2 LINE L2 2154 2385 -929 342 301 60 1 chr3 144409310 144409420 -83115158 - MIR SINE MIR -67 141 39 2022 139 10 0 chr3 144409577 144409880 -83114698 + AluSx SINE Alu 1 306 -6 220 345 48 0 chr3 144410041 144410125 -83114453 - MIR SINE MIR -157 105 18 288 316 137 0 chr3 144410883 144411022 -83113556 + MIR SINE MIR 77 234 -28 1025 205 165 4 chr3 144411874 144412128 -83112450 - MER106B DNA MER1_type -708 351 57 259 354 21 21 chr3 144412354 144412498 -83112080 + MER103 DNA DNA 22 165 -1 2547 36 0 0 chr3 144413456 144413757 -83110821 - AluY SINE Alu -10 301 1 31 58 0 0 chr3 144414764 144414816 -83109762 + GC_rich Low_complexity Low_complexity 1 52 0 28 71 0 0 chr3 144414875 144414931 -83109647 + GC_rich Low_complexity Low_complexity 1 56 0 27 73 0 0 chr3 144415061 144415116 -83109462 + GC_rich Low_complexity Low_complexity 1 55 0 32 75 0 0 chr3 144415142 144415209 -83109369 + GC_rich Low_complexity Low_complexity 1 67 0 390 82 0 94 chr3 144415462 144415621 -83108957 + (CGGGGG)n Simple_repeat Simple_repeat 1 144 0 241 335 77 24 chr3 144416534 144416743 -83107835 + L2 LINE L2 3033 3252 -61 1784 189 86 16 chr3 144416879 144417598 -83106980 + L1M4 LINE L1 4868 5634 -540 695 204 66 0 chr3 144417598 144417735 -83106843 - FAM SINE Alu -39 146 1 509 302 14 0 chr3 144417737 144417876 -83106702 - MLT1H1 LTR MaLR -414 141 1 290 95 0 0 chr3 144417876 144417918 -83106660 + MIR SINE MIR 108 149 -59 1042 296 54 9 chr3 144417920 144418346 -83106232 + MER90 LTR ERV1 1 445 -130 439 293 156 9 chr3 144418953 144419165 -83105413 - Charlie8 DNA MER1_type -2146 271 29 1014 175 0 0 chr3 144419165 144419331 -83105247 + FRAM SINE Alu 1 166 -10 600 185 0 0 chr3 144420055 144420212 -83104366 + CT-rich Low_complexity Low_complexity 2 158 0 193 156 16 31 chr3 144420226 144420290 -83104288 + (TCTCTG)n Simple_repeat Simple_repeat 4 66 0 326 230 113 60 chr3 144420297 144420484 -83104094 + MLT1A2 LTR MaLR 173 370 -4 275 270 0 0 chr3 144420709 144420772 -83103806 - MLT1L LTR MaLR -531 84 22 730 200 0 0 chr3 144423286 144423406 -83101172 - FLAM_C SINE Alu -19 124 5 220 303 53 0 chr3 144424562 144424638 -83099940 + MIR SINE MIR 182 261 -1 * 311 321 19 0 chr3 144424622 144424728 -83099850 - MIR SINE MIR -50 212 105 313 211 56 11 chr3 144424872 144424962 -83099616 + MER5A DNA MER1_type 4 97 -92 681 159 40 8 chr3 144424989 144425115 -83099463 - FLAM_A SINE Alu -1 132 3 312 268 0 0 chr3 144425185 144425338 -83099240 + C-rich Low_complexity Low_complexity 1 153 0 352 296 111 0 chr3 144425509 144425644 -83098934 + HAL1 LINE L1 14 163 -2344 333 363 71 6 chr3 144425964 144426146 -83098432 + HAL1 LINE L1 642 835 -1672 182 330 44 22 chr3 144426845 144426936 -83097642 + MIR SINE MIR 47 139 -123 289 335 36 6 chr3 144428232 144428399 -83096179 + L1MCc LINE L1 35 206 -6217 244 176 35 71 chr3 144428586 144428671 -83095907 + MLT1D LTR MaLR 252 333 -172 342 198 177 0 chr3 144428705 144428801 -83095777 - MER81 DNA DNA -1 113 1 586 272 22 33 chr3 144429189 144429373 -83095205 - MIR SINE MIR -32 230 49 236 222 0 0 chr3 144429391 144429436 -83095142 - Tigger5 DNA MER2_type -5 2318 2274 365 152 0 15 chr3 144429450 144429516 -83095062 + Tigger5 DNA MER2_type 2253 2317 -6 1677 166 55 0 chr3 144430047 144430337 -83094241 + AluSx SINE Alu 1 306 -6 337 224 201 8 chr3 144430717 144430851 -83093727 + L2 LINE L2 2900 3059 -254 317 178 178 30 chr3 144431480 144431581 -83092997 - MIR SINE MIR -67 195 80 249 219 53 18 chr3 144432626 144432690 -83091888 - MIR SINE MIR -62 146 88 273 123 420 12 chr3 144432833 144432914 -83091664 + MER20 DNA MER1_type 34 147 -72 2076 159 106 30 chr3 144432940 144433404 -83091174 + L1MB3 LINE L1 5670 6168 -15 237 164 16 66 chr3 144433404 144433465 -83091113 + MER20 DNA MER1_type 162 219 0 382 285 41 8 chr3 144434606 144434729 -83089849 - MIR SINE MIR -116 146 20 2644 166 33 0 chr3 144434831 144435438 -83089140 - L1MB3 LINE L1 -2 6181 5501 194 315 14 14 chr3 144435979 144436052 -83088526 - L2 LINE L2 0 3313 3241 508 294 18 6 chr3 144436098 144436261 -83088317 - L2 LINE L2 -252 3061 2897 449 225 51 7 chr3 144436306 144436444 -83088134 - MER63 DNA MER1_type -12 1050 907 186 247 14 41 chr3 144439490 144439563 -83085015 - MIR SINE MIR -127 135 65 284 350 83 0 chr3 144440087 144440267 -83084311 - MIR SINE MIR -8 254 60 332 206 0 22 chr3 144441703 144441795 -83082783 + (TATATG)n Simple_repeat Simple_repeat 4 93 0 647 201 20 8 chr3 144441821 144442694 -83081884 + (TG)n Simple_repeat Simple_repeat 1 883 0 234 222 0 0 chr3 144444008 144444062 -83080516 + (TG)n Simple_repeat Simple_repeat 1 54 0 2188 160 67 7 chr3 144445040 144445446 -83079132 + MSTB1 LTR MaLR 1 430 -2 261 98 0 0 chr3 144445828 144445869 -83078709 + (GGGA)n Simple_repeat Simple_repeat 2 42 0 2256 116 0 3 chr3 144446993 144447296 -83077282 + AluSq SINE Alu 2 303 -10 314 281 55 34 chr3 144447340 144447486 -83077092 + L1ME2 LINE L1 6006 6154 -10 226 231 0 51 chr3 144448346 144448424 -83076154 - AluJ/FLAM SINE Alu -207 95 22 221 266 57 24 chr3 144448516 144448640 -83075938 + L2 LINE L2 2633 2760 -554 222 318 204 14 chr3 144448721 144449010 -83075568 + L2 LINE L2 2966 3309 -4 354 127 0 0 chr3 144450926 144450997 -83073581 + (GGAA)n Simple_repeat Simple_repeat 4 74 0 2720 122 86 0 chr3 144451279 144451707 -83072871 + MER4C LTR ERV1 1 465 0 254 258 105 8 chr3 144451872 144451996 -83072582 - L1MC/D LINE L1 -2354 5454 5319 689 337 77 32 chr3 144452003 144452469 -83072109 - L1MC/D LINE L1 -847 5299 4813 22 0 0 0 chr3 144452626 144452648 -83071930 + AT_rich Low_complexity Low_complexity 1 22 0 926 300 42 28 chr3 144454946 144455427 -83069151 - L1MC4a LINE L1 -359 7449 7031 438 94 0 0 chr3 144455800 144455864 -83068714 + (CA)n Simple_repeat Simple_repeat 1 64 0 344 247 11 28 chr3 144455912 144456090 -83068488 + (CATA)n Simple_repeat Simple_repeat 1 175 0 296 284 142 7 chr3 144456213 144456361 -83068217 - MIR SINE MIR -79 183 16 2539 154 44 21 chr3 144456588 144457062 -83067516 + MER31A LTR ERV1 1 485 0 2260 70 4 0 chr3 144457170 144457440 -83067138 - AluY SINE Alu -35 276 6 291 336 22 8 chr3 144457573 144457707 -83066871 + MIR SINE MIR 77 212 -50 481 327 67 75 chr3 144457740 144457881 -83066697 - L1M4 LINE L1 -817 5329 5188 801 167 8 0 chr3 144457881 144458007 -83066571 - FLAM_A SINE Alu -2 131 5 481 327 67 75 chr3 144458007 144458388 -83066190 - L1M4 LINE L1 -958 5188 4811 697 151 56 0 chr3 144458837 144458963 -83065615 + FLAM_C SINE Alu 1 133 0 2461 103 7 49 chr3 144459055 144459428 -83065150 + MER4B LTR ERV1 1 388 -222 1989 132 0 7 chr3 144459428 144459708 -83064870 + AluSg SINE Alu 1 278 -32 351 0 0 0 chr3 144459709 144459748 -83064830 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 2461 103 7 49 chr3 144459748 144459780 -83064798 + MER4B LTR ERV1 387 391 -219 659 125 0 36 chr3 144459793 144459905 -83064673 + MER4B LTR ERV1 503 610 0 656 225 115 16 chr3 144460408 144460590 -83063988 + MIR SINE MIR 48 247 -15 433 329 57 54 chr3 144460630 144460928 -83063650 + L1M4 LINE L1 4072 4370 -1776 879 193 6 0 chr3 144460940 144461121 -83063457 + L1MB8 LINE L1 4130 4311 -1835 3650 147 54 16 chr3 144461128 144461855 -83062723 + Tigger3b DNA MER2_type 1 754 -477 22 0 0 0 chr3 144461855 144461877 -83062701 + AT_rich Low_complexity Low_complexity 1 22 0 333 27 0 228 chr3 144461877 144462061 -83062517 + (TTTTTA)n Simple_repeat Simple_repeat 3 144 0 2883 133 9 15 chr3 144462078 144462545 -83062033 + Tigger3b DNA MER2_type 769 1232 0 518 179 0 0 chr3 144462545 144462657 -83061921 + L1MB8 LINE L1 4313 4424 -1722 3722 199 55 23 chr3 144462710 144463489 -83061089 - MER21B LTR ERV1 -37 826 19 336 64 0 0 chr3 144463489 144463536 -83061042 + (TA)n Simple_repeat Simple_repeat 2 48 0 3722 199 55 23 chr3 144463536 144463552 -83061026 - MER21B LTR ERV1 -844 19 5 3800 190 67 15 chr3 144463553 144465210 -83059368 + L1MB8 LINE L1 4436 6178 0 701 363 72 28 chr3 144465250 144465673 -83058905 + L1M4 LINE L1 4459 4916 -1230 2713 147 0 36 chr3 144465673 144466123 -83058455 - Tigger2a DNA MER2_type 0 434 1 701 363 72 28 chr3 144466123 144466278 -83058300 + L1M4 LINE L1 4916 5063 -1083 238 322 68 0 chr3 144466871 144466989 -83057589 + MIR3 SINE MIR 82 207 -1 339 235 132 47 chr3 144467806 144468015 -83056563 + MLT1G1 LTR MaLR 339 565 -30 1906 174 11 6 chr3 144468015 144468365 -83056213 + MLT2D LTR ERVL 1 352 -62 207 156 0 0 chr3 144468393 144468425 -83056153 + (CA)n Simple_repeat Simple_repeat 2 33 0 242 57 38 94 chr3 144468429 144468482 -83056096 + MLT2D LTR ERVL 358 407 -7 886 193 45 8 chr3 144469283 144469592 -83054986 + MLT1A1 LTR MaLR 1 365 0 1109 161 17 59 chr3 144470368 144470604 -83053974 - MER57-int LTR ERV1 -32 7505 7280 740 106 15 30 chr3 144470604 144470736 -83053842 - LTR54B LTR ERV1 -366 132 3 11851 132 11 9 chr3 144470736 144472637 -83051941 - MER57-int LTR ERV1 -392 7145 5242 351 233 11 41 chr3 144472642 144472842 -83051736 - MER34C LTR ERV1 -195 390 155 4595 174 8 16 chr3 144473069 144473907 -83050671 - MER57A-int LTR ERV1 -6705 832 1 2302 168 23 0 chr3 144473907 144474301 -83050277 - MER57A LTR ERV1 0 403 1 712 283 80 63 chr3 144474522 144475059 -83049519 + L1MC4 LINE L1 7496 8041 -1 3738 163 51 21 chr3 144475104 144475851 -83048727 - MER4E LTR ERV1 -10 769 1 22 0 0 0 chr3 144476494 144476516 -83048062 + AT_rich Low_complexity Low_complexity 1 22 0 290 344 56 9 chr3 144476698 144476913 -83047665 - L1MC4a LINE L1 -1849 5959 5735 263 282 16 8 chr3 144477131 144477255 -83047323 - L1P LINE L1 -722 5429 5305 1106 241 8 4 chr3 144477401 144477646 -83046932 + LTR1B LTR ERV1 1 246 -580 1323 174 12 47 chr3 144477665 144478009 -83046569 - HERVH LTR ERV1 -6435 1278 947 2172 138 95 5 chr3 144478178 144478578 -83046000 - HERVH LTR ERV1 -7255 458 23 2107 146 42 21 chr3 144478612 144479043 -83045535 - LTR7 LTR ERV1 -10 440 1 1300 153 42 8 chr3 144479043 144479279 -83045299 + LTR1B LTR ERV1 583 826 0 17679 152 35 29 chr3 144479280 144482346 -83042232 + HUERS-P2 LTR ERV1 2 3087 -1 4251 145 103 29 chr3 144482348 144483114 -83041464 + LTR1B LTR ERV1 1 823 -3 508 324 38 54 chr3 144483211 144483918 -83040660 - L1M4 LINE L1 -1095 5051 4356 449 246 36 7 chr3 144483952 144484090 -83040488 - L1MB8 LINE L1 0 6178 6037 234 299 15 0 chr3 144484073 144484140 -83040438 - L1ME1 LINE L1 -162 6004 5937 * 926 133 63 7 chr3 144484217 144484360 -83040218 - THE1B LTR MaLR -2 362 212 1347 160 4 46 chr3 144484473 144484710 -83039868 - THE1B LTR MaLR -137 227 1 631 319 128 0 chr3 144484725 144485217 -83039361 - L1M4 LINE L1 -1981 4165 3611 257 329 31 19 chr3 144485268 144485429 -83039149 - L1M4 LINE L1 -2613 3533 3371 27 62 0 0 chr3 144485492 144485540 -83039038 + AT_rich Low_complexity Low_complexity 1 48 0 804 160 8 0 chr3 144485540 144485665 -83038913 - AluJb SINE Alu -186 126 1 853 194 118 14 chr3 144486118 144486329 -83038249 - L1MB5 LINE L1 -6 6168 5936 2349 131 13 8 chr3 144486332 144486705 -83037873 + THE1C LTR MaLR 1 375 0 10195 116 35 40 chr3 144486705 144487023 -83037555 + THE1B-int LTR MaLR 1 319 -1261 2416 144 8 0 chr3 144487023 144487384 -83037194 + THE1B LTR MaLR 1 364 0 10195 116 35 40 chr3 144487384 144488653 -83035925 + THE1B-int LTR MaLR 319 1580 0 2195 159 16 13 chr3 144488655 144489027 -83035551 + THE1C LTR MaLR 3 375 0 3096 184 15 34 chr3 144489032 144489780 -83034798 - L1MB5 LINE L1 -249 5925 5191 2321 109 0 0 chr3 144489786 144490089 -83034489 - AluY SINE Alu -8 303 1 1045 184 0 48 chr3 144490288 144490494 -83034084 - AluJo SINE Alu -30 282 87 563 271 71 69 chr3 144490562 144490912 -83033666 - MLT1J LTR MaLR -117 394 44 204 232 14 29 chr3 144491148 144491217 -83033361 + T-rich Low_complexity Low_complexity 4 71 0 21 57 0 0 chr3 144491455 144491490 -83033088 + AT_rich Low_complexity Low_complexity 1 35 0 277 217 0 76 chr3 144491913 144492005 -83032573 + L1MC4 LINE L1 7846 7930 -112 272 208 0 62 chr3 144491978 144492074 -83032504 + L1MC4 LINE L1 6614 6703 -1339 * 1415 212 7 20 chr3 144492193 144492490 -83032088 - AluJo SINE Alu -19 293 1 2422 90 0 3 chr3 144492612 144492924 -83031654 - AluSx SINE Alu -1 311 1 225 94 0 0 chr3 144492924 144492956 -83031622 + (T)n Simple_repeat Simple_repeat 1 32 0 249 190 35 0 chr3 144493225 144493283 -83031295 - L1P LINE L1 -1102 5044 4985 293 231 70 85 chr3 144493561 144493870 -83030708 - L1MB5 LINE L1 -1587 4559 4255 238 295 58 29 chr3 144494427 144494600 -83029978 - MIR SINE MIR -35 227 50 447 221 15 29 chr3 144494609 144494745 -83029833 - Charlie1 DNA MER1_type 0 2761 2628 1299 128 116 4 chr3 144494746 144494997 -83029581 - L1MA4 LINE L1 -2 6298 6020 554 277 119 0 chr3 144495058 144495235 -83029343 - Charlie1 DNA MER1_type -2562 199 2 192 171 24 0 chr3 144495476 144495517 -83029061 - MIR SINE MIR -83 125 84 802 256 31 75 chr3 144497494 144497814 -83026764 + MER46C DNA MER2_type 1 306 -32 2345 97 162 8 chr3 144498210 144498581 -83025997 + MSTA LTR MaLR 1 428 0 595 271 83 44 chr3 144498639 144499000 -83025578 + L1MC4 LINE L1 7556 7930 -112 272 208 0 62 chr3 144498973 144499069 -83025509 + L1MC4 LINE L1 6614 6703 -1339 * 383 211 27 102 chr3 144499098 144499186 -83025392 + L1MC4 LINE L1 7907 7981 -61 2427 79 0 0 chr3 144499186 144499476 -83025102 - AluSc SINE Alu -19 290 1 383 211 27 102 chr3 144499476 144499534 -83025044 + L1MC4 LINE L1 7981 8042 0 512 183 42 22 chr3 144500496 144500809 -83023769 + GA-rich Low_complexity Low_complexity 1 319 0 257 318 47 8 chr3 144501778 144501907 -83022671 - MIR SINE MIR -16 246 113 336 273 129 0 chr3 144501915 144502054 -83022524 - MIR SINE MIR -93 169 13 270 184 79 0 chr3 144502365 144502441 -83022137 + MER113 DNA MER1_type? 62 143 -378 1458 199 4 11 chr3 144502442 144502713 -83021865 + AluJo SINE Alu 1 269 -43 314 243 0 0 chr3 144503508 144503582 -83020996 + MIR SINE MIR 96 169 -93 300 111 0 0 chr3 144506730 144506775 -83017803 + (GGA)n Simple_repeat Simple_repeat 2 46 0 336 200 24 24 chr3 144507141 144507226 -83017352 + MIR SINE MIR 64 148 -60 1526 197 153 33 chr3 144507226 144507677 -83016901 - MLT1D LTR MaLR 0 505 1 263 140 20 0 chr3 144508661 144508711 -83015867 + GA-rich Low_complexity Low_complexity 3 53 0 28 71 0 0 chr3 144509270 144509326 -83015252 + AT_rich Low_complexity Low_complexity 1 56 0 1672 137 158 102 chr3 144509326 144509378 -83015200 - MER4A LTR ERV1 0 664 616 2280 84 7 13 chr3 144509378 144509676 -83014902 + AluSc SINE Alu 1 296 -13 1672 137 158 102 chr3 144509676 144510004 -83014574 - MER4A LTR ERV1 -48 616 263 664 131 0 10 chr3 144510004 144510103 -83014475 - MER4A LTR ERV1 -566 98 1 227 309 52 7 chr3 144510123 144510259 -83014319 + Charlie8 DNA MER1_type 114 255 -2162 1557 173 14 11 chr3 144510915 144511198 -83013380 + L1PA15 LINE L1 5875 6158 -7 844 226 35 22 chr3 144511201 144511427 -83013151 + L1M4 LINE L1 4490 4718 -1428 2290 94 0 3 chr3 144511432 144511719 -83012859 + AluSx SINE Alu 14 299 -13 774 201 29 10 chr3 144512156 144512360 -83012218 + L1MEc LINE L1 2192 2399 -3997 * 4386 242 79 19 chr3 144512359 144513655 -83010923 + L1M4 LINE L1 10 1382 -5160 5994 185 24 127 chr3 144513655 144516839 -83007739 + L1PA15 LINE L1 3002 5852 -313 277 196 0 40 chr3 144516888 144517036 -83007542 + T-rich Low_complexity Low_complexity 1 142 0 945 79 0 0 chr3 144517058 144517198 -83007380 + (T)n Simple_repeat Simple_repeat 1 140 0 789 169 24 24 chr3 144517317 144517483 -83007095 + L1M4 LINE L1 4704 4869 -1277 * 2057 192 72 25 chr3 144517473 144517983 -83006595 + L1MC3 LINE L1 7251 7784 -1 821 239 87 0 chr3 144517983 144518201 -83006377 - MER97a DNA MER1_type? -657 237 1 723 152 76 0 chr3 144519247 144519392 -83005186 - MLT1C LTR MaLR -303 164 9 651 307 80 19 chr3 144520258 144520571 -83004007 + MER46C DNA MER2_type 2 333 -5 702 176 34 14 chr3 144520783 144520931 -83003647 + L1MCa LINE L1 20 170 -6256 339 25 0 0 chr3 144521338 144521378 -83003200 + (CA)n Simple_repeat Simple_repeat 1 40 0 1135 220 35 12 chr3 144521378 144521633 -83002945 - L1MB2 LINE L1 -6 6401 6141 366 204 204 0 chr3 144521633 144521731 -83002847 - Tigger5 DNA MER2_type 0 2323 2206 890 194 73 93 chr3 144521831 144522079 -83002499 - Tigger5 DNA MER2_type -116 2207 8 6815 203 36 17 chr3 144522095 144524278 -83000300 - L1MB2 LINE L1 -273 6134 3909 6709 23 16 0 chr3 144524280 144525056 -82999522 - L1PA3 LINE L1 -1 6154 5367 5435 29 11 0 chr3 144525041 144525697 -82998881 + L1PA3 LINE L1 4721 5383 -763 * 5395 226 32 16 chr3 144525696 144527177 -82997401 - L1MB2 LINE L1 -2449 3933 2412 * 1464 209 3 17 chr3 144527177 144527474 -82997104 - AluJo SINE Alu -19 293 1 5395 226 32 16 chr3 144527474 144527629 -82996949 - L1MB2 LINE L1 -3970 2412 2261 325 274 35 62 chr3 144527744 144527932 -82996646 - L1MC/D LINE L1 -682 5439 5256 280 242 124 7 chr3 144528700 144528853 -82995725 - HAL1b LINE L1 -1116 232 62 521 283 110 16 chr3 144530835 144531143 -82993435 - MLT1I LTR MaLR -4 405 69 1695 257 141 23 chr3 144531260 144532038 -82992540 - L1ME3 LINE L1 -32 6130 5261 362 262 106 28 chr3 144532764 144532905 -82991673 + L1ME LINE L1 5624 5775 -395 24 0 0 0 chr3 144533394 144533418 -82991160 + GC_rich Low_complexity Low_complexity 1 24 0 210 208 0 0 chr3 144533745 144533793 -82990785 + CT-rich Low_complexity Low_complexity 4 51 0 230 325 65 16 chr3 144533796 144533919 -82990659 - L1MC/D LINE L1 -1946 5862 5734 565 281 35 0 chr3 144534815 144534986 -82989592 + MLT1I LTR MaLR 233 409 0 336 345 57 0 chr3 144535093 144535270 -82989308 - L2 LINE L2 -913 2401 2215 297 242 15 0 chr3 144535561 144535627 -82988951 - MER113 DNA MER1_type? -1 520 454 410 254 138 26 chr3 144535649 144535838 -82988740 - MER113 DNA MER1_type? -310 211 2 273 306 58 0 chr3 144536679 144536800 -82987778 + MIR SINE MIR 65 192 -70 235 214 114 0 chr3 144536897 144536967 -82987611 - LTR67 LTR ERVL -23 534 457 401 353 66 12 chr3 144537674 144537915 -82986663 - L1M4 LINE L1 -1865 4281 4028 245 316 51 0 chr3 144538177 144538256 -82986322 - MLT1I LTR MaLR -164 245 163 627 292 139 47 chr3 144538264 144538767 -82985811 + MLT1G3 LTR MaLR 13 510 -32 257 27 54 0 chr3 144538772 144538809 -82985769 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 2061 59 27 12 chr3 144538812 144539068 -82985510 - AluY SINE Alu -29 282 23 297 258 53 0 chr3 144539252 144539384 -82985194 + L1 LINE L1 4285 4423 -1723 520 295 150 18 chr3 144540736 144541136 -82983442 + L2 LINE L2 2861 3313 0 191 296 259 9 chr3 144541140 144541248 -82983330 + L2 LINE L2 3129 3263 -9 1903 122 177 14 chr3 144541401 144541769 -82982809 + MSTA LTR MaLR 1 428 0 336 318 49 49 chr3 144542521 144542845 -82981733 - HAL1 LINE L1 -170 2337 2014 204 40 0 0 chr3 144543099 144543124 -82981454 + (T)n Simple_repeat Simple_repeat 1 25 0 420 289 64 12 chr3 144543746 144543919 -82980659 - HAL1 LINE L1 -1296 1211 1030 1048 164 70 45 chr3 144544029 144544230 -82980348 - AluJo SINE Alu -90 222 17 1619 253 90 10 chr3 144544439 144544930 -82979648 - L1ME2 LINE L1 -40 6124 5595 411 172 131 0 chr3 144545113 144545212 -82979366 + LTR54 LTR ERV1 3 114 -396 553 264 117 15 chr3 144545310 144545507 -82979071 + MER57A LTR ERV1 187 403 0 700 225 75 15 chr3 144545541 144545741 -82978837 + MER57A-int LTR ERV1 36 247 -7290 1819 160 0 14 chr3 144545998 144546286 -82978292 - AluSq SINE Alu -29 284 1 3277 94 2 2 chr3 144547686 144548120 -82976458 + MER57B LTR ERV1 1 434 0 4686 151 34 37 chr3 144548120 144549798 -82974780 + MER57-int LTR ERV1 3 1684 -5875 5732 36 0 0 chr3 144549798 144550463 -82974115 - L1PA5 LINE L1 0 6154 5490 4686 151 34 37 chr3 144550463 144551027 -82973551 + MER57-int LTR ERV1 1684 4143 -3416 * 6039 118 31 16 chr3 144551020 144552316 -82972262 + MER57-int LTR ERV1 1848 5522 -2015 1163 105 6 0 chr3 144552316 144552478 -82972100 + MER57-int LTR ERV1 6991 7153 -384 666 176 23 15 chr3 144552478 144552609 -82971969 + LTR54B LTR ERV1 5 136 -362 582 29 0 0 chr3 144552652 144552720 -82971858 + MER57B-int LTR ERV1 7468 7535 -2 3099 112 12 0 chr3 144552721 144553150 -82971428 + MER57B LTR ERV1 1 434 0 641 332 64 53 chr3 144553643 144554491 -82970087 + MER57B-int LTR ERV1 158 3914 -3803 355 359 0 0 chr3 144555057 144555149 -82969429 + MER89-int LTR ERV1 3786 3877 -2924 1972 250 33 87 chr3 144555243 144556638 -82967940 + MER89-int LTR ERV1 2090 6205 -1332 2081 246 37 8 chr3 144556882 144557373 -82967205 + MER89-int LTR ERV1 6637 7141 -396 487 172 65 0 chr3 144557376 144557469 -82967109 + LTR54 LTR ERV1 1 99 -411 1043 214 0 6 chr3 144557488 144557666 -82966912 + MER8 DNA MER2_type 1 177 -62 304 224 26 13 chr3 144557694 144557770 -82966808 - Tigger2 DNA MER2_type -2641 77 1 760 223 135 39 chr3 144557772 144558032 -82966546 + MER57A LTR ERV1 115 399 -4 194 260 99 103 chr3 144558442 144558754 -82965824 + L2 LINE L2 1356 1666 -1648 2088 154 43 0 chr3 144559715 144560086 -82964492 - L1MB3 LINE L1 -2 6181 5795 216 0 0 0 chr3 144561032 144561056 -82963522 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 216 0 0 0 chr3 144561361 144561385 -82963193 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 221 333 115 31 chr3 144561744 144562032 -82962546 - L2 LINE L2 -28 3244 2933 619 242 16 0 chr3 144562152 144562276 -82962302 - MLT1F1 LTR MaLR -416 151 26 495 230 65 154 chr3 144562289 144562659 -82961919 - MLT1F1-int LTR MaLR 0 1734 1141 418 331 22 16 chr3 144562864 144563048 -82961530 - MLT1F1-int LTR MaLR -488 883 699 735 268 64 14 chr3 144563231 144563451 -82961127 - MLT1F1-int LTR MaLR -758 613 383 2138 129 0 19 chr3 144563803 144564112 -82960466 + AluSx SINE Alu 1 303 -9 201 350 34 8 chr3 144564251 144564368 -82960210 - L2 LINE L2 -304 2968 2849 776 256 139 37 chr3 144564460 144564870 -82959708 - L2 LINE L2 -7 3306 2855 795 201 0 0 chr3 144565481 144565660 -82958918 + T-rich Low_complexity Low_complexity 1 179 0 591 190 0 34 chr3 144565619 144565798 -82958780 + CT-rich Low_complexity Low_complexity 3 175 0 * 348 259 66 48 chr3 144567182 144567348 -82957230 + MIR SINE MIR 24 192 -70 988 66 8 0 chr3 144567395 144567539 -82957039 - AluSg/x SINE Alu 0 303 159 273 98 0 0 chr3 144568126 144568167 -82956411 + (CA)n Simple_repeat Simple_repeat 2 42 0 10429 222 66 26 chr3 144568374 144568504 -82956074 - L1MC2 LINE L1 -9 6753 6630 2128 132 7 3 chr3 144568504 144568814 -82955764 - AluJo SINE Alu -1 311 1 10429 222 66 26 chr3 144568814 144568861 -82955717 - L1MC2 LINE L1 -132 6630 6586 2012 129 14 17 chr3 144568861 144569156 -82955422 - AluSx SINE Alu -18 294 1 10429 222 66 26 chr3 144569156 144572584 -82951994 - L1MC2 LINE L1 -176 6586 2706 2153 81 32 11 chr3 144572584 144572869 -82951709 + AluSp SINE Alu 1 291 -22 10429 222 66 26 chr3 144572869 144575327 -82949251 - L1MC2 LINE L1 -4056 2706 349 3926 108 17 22 chr3 144575328 144575602 -82948976 - LTR19B LTR ERV1 0 580 306 2333 84 0 3 chr3 144575602 144575898 -82948680 - AluSc SINE Alu -14 295 1 3926 108 17 22 chr3 144575898 144576206 -82948372 - LTR19B LTR ERV1 -274 306 1 1464 126 23 0 chr3 144576207 144576422 -82948156 - HERVFH19I LTR ERV1 -1 7718 7499 * 7970 199 47 50 chr3 144576417 144578962 -82945616 - LTR19-int LTR ERV1 -332 6894 4463 25 51 0 0 chr3 144580110 144580149 -82944429 + AT_rich Low_complexity Low_complexity 1 39 0 25 0 0 0 chr3 144580287 144580312 -82944266 + AT_rich Low_complexity Low_complexity 1 25 0 3024 104 28 25 chr3 144580312 144580782 -82943796 - LTR19-int LTR ERV1 -3998 1588 1118 254 174 0 0 chr3 144580758 144580804 -82943774 - LTR19-int LTR ERV1 -4666 920 875 * 4336 198 16 12 chr3 144580806 144581807 -82942771 + L1 LINE L1 2959 3967 -2179 4320 114 75 65 chr3 144581787 144582658 -82941920 + L1PA16 LINE L1 5288 6166 0 * 237 178 0 0 chr3 144582732 144582777 -82941801 + (CCCTG)n Simple_repeat Simple_repeat 4 48 0 1739 175 11 0 chr3 144582777 144583057 -82941521 - AluJb SINE Alu -20 292 10 1684 248 184 35 chr3 144583071 144585176 -82939402 + L1ME3A LINE L1 3704 6156 -6 255 177 177 16 chr3 144585178 144585302 -82939276 - MER113 DNA MER1_type? -372 149 6 192 267 12 93 chr3 144585541 144585627 -82938951 - MIR SINE MIR -104 104 26 1155 116 0 0 chr3 144586475 144586639 -82937939 + U1 snRNA snRNA 2 165 0 233 230 47 128 chr3 144586660 144586808 -82937770 - MER5A DNA MER1_type -50 139 4 453 271 333 5 chr3 144587398 144587984 -82936594 - LTR50 LTR ERVL -13 782 5 374 286 155 5 chr3 144589054 144589260 -82935318 + MIR SINE MIR 20 256 -6 783 245 62 71 chr3 144589751 144590204 -82934374 - MLT1K LTR MaLR 0 588 140 649 217 161 0 chr3 144590670 144590850 -82933728 - MER3 DNA MER1_type 0 209 1 2320 74 0 18 chr3 144593244 144593555 -82931023 + AluSg SINE Alu 1 306 0 368 203 28 49 chr3 144594266 144594409 -82930169 - L2 LINE L2 -330 2983 2844 247 254 98 41 chr3 144594750 144594872 -82929706 + MIR SINE MIR 126 254 -8 1994 141 176 2 chr3 144594923 144595326 -82929252 - MER101 LTR ERV1 0 474 2 191 341 24 0 chr3 144595369 144595454 -82929124 - MIR SINE MIR -74 188 102 598 258 134 5 chr3 144598935 144599144 -82925434 - MIR SINE MIR -2 260 25 775 266 128 57 chr3 144599471 144599892 -82924686 - LTR16A1 LTR ERVL 0 457 7 2320 74 0 18 chr3 144601029 144601340 -82923238 + AluSg SINE Alu 1 306 0 368 203 28 49 chr3 144602051 144602194 -82922384 - L2 LINE L2 -330 2983 2844 247 254 98 41 chr3 144602535 144602657 -82921921 + MIR SINE MIR 126 254 -8 2022 141 173 2 chr3 144602708 144603112 -82921466 - MER101 LTR ERV1 0 474 2 191 341 24 0 chr3 144603155 144603240 -82921338 - MIR SINE MIR -74 188 102 368 254 23 9 chr3 144605695 144605812 -82918766 - MLT1G LTR MaLR 0 530 432 485 241 35 37 chr3 144605984 144606171 -82918407 - MLT1H LTR MaLR 0 590 388 * 612 271 88 20 chr3 144606152 144606403 -82918175 - MLT1H LTR MaLR -274 275 8 5091 181 44 27 chr3 144606666 144608546 -82916032 - L1MB1 LINE L1 -7 6397 4475 1471 200 60 7 chr3 144608546 144608831 -82915747 - AluJo SINE Alu -12 300 1 5091 181 44 27 chr3 144608831 144608953 -82915625 - L1MB1 LINE L1 -1929 4475 4357 1348 191 31 8 chr3 144608953 144609210 -82915368 + Tigger7 DNA MER2_type 1 263 -2224 379 177 8 177 chr3 144609203 144609227 -82915351 + Tigger7 DNA MER2_type 2388 2414 -77 * 1963 152 14 0 chr3 144609227 144609583 -82914995 + MER47A DNA MER2_type 2 362 -4 379 177 8 177 chr3 144609583 144609682 -82914896 + Tigger7 DNA MER2_type 2414 2490 -1 5655 248 98 29 chr3 144609688 144613697 -82910881 - L1MB1 LINE L1 -2029 4353 33 1687 206 51 21 chr3 144613699 144614194 -82910384 - L1ME LINE L1 -490 5676 5170 552 291 68 15 chr3 144614197 144614403 -82910175 - MIR SINE MIR -26 236 20 246 304 22 0 chr3 144615382 144615474 -82909104 - MIR SINE MIR -148 114 21 282 285 28 21 chr3 144616297 144616441 -82908137 - LTR33 LTR ERVL -13 508 364 25 0 0 0 chr3 144617429 144617454 -82907124 + AT_rich Low_complexity Low_complexity 1 25 0 290 312 55 0 chr3 144618405 144618514 -82906064 - MLT2E LTR ERVL -18 610 496 571 260 157 5 chr3 144618638 144618970 -82905608 - MLT2E LTR ERVL -73 555 124 821 207 65 54 chr3 144619193 144619601 -82904977 - LTR55 LTR ERV 0 548 71 185 271 110 8 chr3 144619763 144619881 -82904697 - L2 LINE L2 -5 3308 3179 274 318 0 0 chr3 144620159 144620225 -82904353 + L2 LINE L2 3248 3313 0 324 116 14 58 chr3 144620497 144620566 -82904012 + MSTA LTR MaLR 1 66 -362 1046 244 29 1 chr3 144621981 144622249 -82902329 - MLT1E2 LTR MaLR -5 610 348 219 258 56 34 chr3 144623193 144623282 -82901296 - MIR SINE MIR -15 247 157 339 219 0 5 chr3 144624159 144624293 -82900285 + MER20 DNA MER1_type 29 219 0 195 69 0 0 chr3 144624334 144624363 -82900215 + (GGCTG)n Simple_repeat Simple_repeat 3 31 0 369 242 133 0 chr3 144624782 144624910 -82899668 + MIR SINE MIR 32 176 -86 219 300 36 45 chr3 144625093 144625203 -82899375 + L2 LINE L2 2714 2822 -492 1306 275 48 9 chr3 144626138 144626571 -82898007 - MLT1C LTR MaLR -15 452 3 208 271 28 17 chr3 144628396 144628524 -82896054 - MIR SINE MIR 0 262 162 342 0 0 0 chr3 144629143 144629181 -82895397 + (TG)n Simple_repeat Simple_repeat 2 39 0 435 286 119 91 chr3 144629298 144629720 -82894858 - L1MEc LINE L1 -2703 3512 3081 2461 93 0 0 chr3 144629734 144630034 -82894544 + AluSx SINE Alu 1 300 -12 839 265 74 49 chr3 144630061 144630844 -82893734 - L1MEc LINE L1 -3725 2517 1731 698 286 35 43 chr3 144630858 144631253 -82893325 - L1MEc LINE L1 -4437 2701 2310 1931 243 71 0 chr3 144631287 144631752 -82892826 - L1MEc LINE L1 -6360 499 2 362 333 74 64 chr3 144631762 144631951 -82892627 - L1M4 LINE L1 -3180 2966 2771 1410 211 115 44 chr3 144631951 144632387 -82892191 - MLT1C LTR MaLR 0 467 1 362 333 74 64 chr3 144632387 144632494 -82892084 - L1M4 LINE L1 -3375 2771 2667 5341 170 39 0 chr3 144632517 144633590 -82890988 - L1MC1 LINE L1 -4 6329 5216 871 286 114 31 chr3 144633732 144634285 -82890293 - L2 LINE L2 -721 2593 1995 1768 194 55 0 chr3 144634666 144635032 -82889546 - MLT1B LTR MaLR -4 386 1 613 159 14 154 chr3 144635513 144635612 -82888966 + Charlie5 DNA MER1_type 2366 2421 -203 1924 151 13 13 chr3 144635612 144635924 -82888654 - AluJo SINE Alu 0 312 1 613 159 14 154 chr3 144635924 144636038 -82888540 + Charlie5 DNA MER1_type 2421 2549 -75 1379 146 23 5 chr3 144636040 144636260 -82888318 - AluJb SINE Alu -16 296 73 675 165 76 25 chr3 144636892 144637070 -82887508 + AluSg/x SINE Alu 135 312 0 22 0 0 0 chr3 144637086 144637108 -82887470 + AT_rich Low_complexity Low_complexity 1 22 0 2001 143 0 32 chr3 144637111 144637419 -82887159 + AluSx SINE Alu 1 298 -14 2256 89 4 4 chr3 144637419 144637743 -82886835 + AluSx SINE Alu 1 324 0 27 0 0 0 chr3 144637779 144637806 -82886772 + AT_rich Low_complexity Low_complexity 1 27 0 223 293 37 0 chr3 144638155 144638237 -82886341 - L2 LINE L2 -19 3294 3210 339 250 0 0 chr3 144639093 144639181 -82885397 + L1MA9 LINE L1 6187 6274 -38 387 325 81 0 chr3 144639270 144639430 -82885148 + MIR SINE MIR 49 221 -41 608 253 92 17 chr3 144640754 144641047 -82883531 - LTR16A1 LTR ERVL -2 455 141 620 270 87 24 chr3 144641710 144642112 -82882466 - MLT1H LTR MaLR -10 539 82 285 260 16 41 chr3 144644122 144644245 -82880333 + L2 LINE L2 3151 3270 -2 306 274 111 59 chr3 144646556 144646691 -82877887 - MLT1G1 LTR MaLR -11 584 443 333 307 40 45 chr3 144646750 144646926 -82877652 - MLT1H1 LTR MaLR -339 216 42 226 318 34 11 chr3 144646954 144647042 -82877536 - MER91B DNA MER1_type 0 190 101 230 219 55 41 chr3 144647081 144647154 -82877424 - MER91B DNA MER1_type -61 129 56 384 316 99 30 chr3 144647709 144648214 -82876364 - L2 LINE L2 0 3272 2743 3780 171 44 9 chr3 144648838 144649650 -82874928 - L1 LINE L1 -803 5343 4503 230 305 29 0 chr3 144649763 144649937 -82874641 - L1M4 LINE L1 -861 5285 5107 243 0 0 0 chr3 144649941 144649968 -82874610 + (TG)n Simple_repeat Simple_repeat 2 28 0 291 28 0 0 chr3 144650000 144650036 -82874542 + (TG)n Simple_repeat Simple_repeat 2 37 0 239 286 123 35 chr3 144650258 144650485 -82874093 - L2 LINE L2 -1484 1830 1584 225 286 26 32 chr3 144651764 144651843 -82872735 + L1ME4a LINE L1 5969 6049 -72 1957 144 3 7 chr3 144651843 144652151 -82872427 - AluSx SINE Alu 0 307 1 225 286 26 32 chr3 144652151 144652224 -82872354 + L1ME4a LINE L1 6049 6121 0 367 317 98 11 chr3 144652276 144652459 -82872119 + L1ME3A LINE L1 5758 5956 -214 308 164 0 0 chr3 144652680 144652741 -82871837 - L1MB7 LINE L1 -16 6168 6108 1147 189 5 0 chr3 144652745 144652962 -82871616 + L1MB7 LINE L1 5661 5878 -306 1108 168 74 61 chr3 144652953 144653339 -82871239 - L1M4 LINE L1 -724 5690 5304 * 3500 210 52 23 chr3 144653472 144653967 -82870611 - L1M4 LINE L1 -2773 3609 3130 1980 157 0 13 chr3 144653967 144654266 -82870312 + AluJb SINE Alu 5 299 -13 3500 210 52 23 chr3 144654266 144655122 -82869456 - L1M4 LINE L1 -3252 3130 2118 579 301 25 5 chr3 144655206 144655405 -82869173 - L1M4 LINE L1 -4560 1824 1622 306 350 64 0 chr3 144656085 144656242 -82868336 - MIR SINE MIR -18 244 78 800 266 31 23 chr3 144657286 144657545 -82867033 + MLT1J LTR MaLR 9 269 -242 341 259 12 0 chr3 144658848 144658929 -82865649 + MLT1I LTR MaLR 288 369 -40 1921 99 59 0 chr3 144659096 144659349 -82865229 - AluSx SINE Alu -44 268 1 288 240 89 7 chr3 144659355 144659501 -82865077 - MER20B DNA MER1_type -57 726 569 696 107 98 16 chr3 144659713 144659835 -82864743 + AluJb SINE Alu 2 133 -179 1198 216 80 28 chr3 144660302 144660663 -82863915 - MLT1B LTR MaLR -10 380 1 402 235 12 0 chr3 144661134 144661219 -82863359 - Zaphod DNA AcHobo 0 4031 3946 269 136 0 0 chr3 144661219 144661263 -82863315 + MER4D LTR ERV1 1 44 -859 1660 248 112 30 chr3 144661269 144661893 -82862685 + MER50 LTR ERV1 14 688 -46 3379 86 13 33 chr3 144661893 144662414 -82862164 - MER9 LTR ERVK 0 511 1 2163 108 5 14 chr3 144662414 144662754 -82861824 - HERVK9 LTR ERVK 0 5916 4922 7408 94 10 3 chr3 144662795 144663840 -82860738 - HERVK9 LTR ERVK -282 5634 4583 1636 55 45 0 chr3 144663841 144664061 -82860517 - HERVK9 LTR ERVK -1976 3940 3711 11945 57 2 1 chr3 144664061 144665578 -82859000 - HERVK9 LTR ERVK -3130 2786 1268 4392 73 8 8 chr3 144665578 144666170 -82858408 - HERVK9 LTR ERVK -5324 592 1 785 115 0 23 chr3 144666170 144666300 -82858278 - MER9 LTR ERVK 0 511 385 24 0 0 0 chr3 144668517 144668541 -82856037 + GC_rich Low_complexity Low_complexity 1 24 0 622 211 11 0 chr3 144669096 144669271 -82855307 + CT-rich Low_complexity Low_complexity 3 179 0 2602 65 9 3 chr3 144669572 144669912 -82854666 - MER9 LTR ERVK -169 342 1 3880 137 86 38 chr3 144669974 144670801 -82853777 + MER4D LTR ERV1 41 664 0 630 214 90 0 chr3 144670801 144670946 -82853632 - MER115 DNA AcHobo -82 611 454 3992 124 23 11 chr3 144671114 144671767 -82852811 - MER4B-int LTR ERV1 -634 6124 5464 4825 121 39 3 chr3 144671902 144672674 -82851904 - MER4B-int LTR ERV1 -1507 5251 4452 3859 137 45 11 chr3 144672673 144673317 -82851261 - MER4B-int LTR ERV1 -2670 4088 3423 * 7947 116 59 33 chr3 144673310 144675385 -82849193 - MER4B-int LTR ERV1 -3350 1665 937 369 0 0 0 chr3 144675396 144675437 -82849141 + (CA)n Simple_repeat Simple_repeat 2 42 0 4098 100 95 65 chr3 144675437 144676206 -82848372 - MER4B-int LTR ERV1 -5611 1147 356 375 181 0 5 chr3 144676843 144676974 -82847604 - MER20 DNA MER1_type 0 219 29 3705 178 39 6 chr3 144677666 144678323 -82846255 - L1MA4 LINE L1 -7 6293 5602 2082 151 3 3 chr3 144678323 144678634 -82845944 - AluSx SINE Alu -1 311 1 3705 178 39 6 chr3 144678634 144678789 -82845789 - L1MA4 LINE L1 -698 5602 5454 183 291 53 85 chr3 144679741 144679930 -82844648 - MER5A DNA MER1_type 0 189 7 1533 143 82 98 chr3 144680137 144680578 -82844000 - MER4B LTR ERV1 -174 436 3 23 0 0 0 chr3 144681044 144681067 -82843511 + GC_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr3 144681126 144681151 -82843427 + GC_rich Low_complexity Low_complexity 1 25 0 623 167 24 0 chr3 144681499 144681625 -82842953 + L1MB2 LINE L1 5770 5898 -273 1060 202 95 58 chr3 144681641 144681987 -82842591 + MER47A DNA MER2_type 8 366 0 855 251 35 12 chr3 144681987 144682242 -82842336 + L1MB2 LINE L1 5905 6165 -6 231 36 0 0 chr3 144682242 144682270 -82842308 + (TG)n Simple_repeat Simple_repeat 1 28 0 330 229 153 7 chr3 144882981 144883125 -82641453 + MIR3 SINE MIR 37 201 -7 2256 92 17 3 chr3 144884008 144884302 -82640276 + AluSc SINE Alu 1 298 -11 874 127 0 40 chr3 144884311 144884437 -82640141 - FLAM_C SINE Alu -16 127 7 397 221 7 7 chr3 144884980 144885116 -82639462 + (TG)n Simple_repeat Simple_repeat 1 136 0 334 312 195 10 chr3 144885141 144885346 -82639232 + MIR SINE MIR 20 262 0 1032 242 33 19 chr3 144885891 144886251 -82638327 - MLT1A1 LTR MaLR 0 365 1 806 153 8 0 chr3 144886727 144886858 -82637720 - FLAM_C SINE Alu -1 132 1 319 202 21 11 chr3 144886862 144886956 -82637622 - MER113 DNA MER1_type? -302 219 125 301 243 243 0 chr3 144886971 144887078 -82637500 + FLAM_C SINE Alu 1 133 0 321 303 30 36 chr3 144887138 144887303 -82637275 + MIR SINE MIR 35 198 -64 1847 75 39 39 chr3 144887605 144887860 -82636718 + AluSg SINE Alu 37 291 -19 707 189 0 0 chr3 144889029 144889156 -82635422 - FLAM_A SINE Alu -6 127 1 217 320 82 0 chr3 144889163 144889260 -82635318 - MIR SINE MIR -61 147 43 2506 54 3 0 chr3 144889510 144889804 -82634774 - AluY SINE Alu -16 295 1 2060 147 0 3 chr3 144891058 144891365 -82633213 + AluJo SINE Alu 1 306 -6 305 146 209 36 chr3 144892071 144892181 -82632397 + MIR SINE MIR 16 144 -118 2227 127 3 0 chr3 144893244 144893544 -82631034 - AluSg SINE Alu -9 301 1 1820 174 3 3 chr3 144893546 144893844 -82630734 - AluJo SINE Alu -10 302 5 2549 59 0 13 chr3 144893877 144894183 -82630395 - AluY SINE Alu -9 302 1 192 296 37 0 chr3 144895512 144895566 -82629012 + L2 LINE L2 3134 3189 -83 261 197 45 15 chr3 144895617 144895683 -82628895 - MIR SINE MIR -73 135 68 281 323 57 52 chr3 144896441 144896633 -82627945 + L2 LINE L2 2907 3099 -173 2256 100 0 7 chr3 144896703 144897002 -82627576 - AluSx SINE Alu -15 297 1 422 321 87 12 chr3 144897077 144897329 -82627249 + MLT1J2 LTR MaLR 59 329 -121 294 240 0 13 chr3 144897331 144897406 -82627172 + MLT1J1 LTR MaLR 373 446 0 1608 156 106 11 chr3 144897445 144897727 -82626851 - AluSg SINE Alu -1 309 1 850 274 77 71 chr3 144897827 144898306 -82626272 - L2 LINE L2 -2 3311 2830 732 234 13 61 chr3 144898312 144898543 -82626035 + L2 LINE L2 3094 3313 0 1635 137 124 9 chr3 144899020 144899342 -82625236 - MSTB LTR MaLR 0 426 68 1949 149 3 0 chr3 144899443 144899725 -82624853 - AluSx SINE Alu -29 283 1 929 147 0 0 chr3 144900113 144900249 -82624329 + AluSg/x SINE Alu 161 296 -16 1093 136 0 0 chr3 144900579 144900741 -82623837 + FAM SINE Alu 4 165 -10 460 119 0 71 chr3 144901284 144901390 -82623188 - AluJ/FRAM SINE Alu 0 312 216 2128 177 9 144 chr3 144901391 144902036 -82622542 - LTR6A LTR ERV1 0 564 1 1492 114 43 14 chr3 144902036 144902246 -82622332 - AluSg SINE Alu -94 216 1 2484 73 0 10 chr3 144902442 144902755 -82621823 + AluY SINE Alu 1 310 -1 820 184 0 1 chr3 144903108 144903339 -82621239 + AluJb SINE Alu 43 304 -8 1286 163 96 0 chr3 144903393 144903633 -82620945 + MER39 LTR ERV1 1 263 -444 2184 91 6 88 chr3 144903638 144903978 -82620600 + AluSx SINE Alu 1 312 0 1906 157 39 6 chr3 144904005 144904361 -82620217 + MER39 LTR ERV1 340 707 0 600 224 26 26 chr3 144904366 144904392 -82620186 - L1M4 LINE L1 -978 5168 5143 1891 116 56 11 chr3 144904392 144904676 -82619902 - AluSx SINE Alu -15 297 1 600 224 26 26 chr3 144904676 144904805 -82619773 - L1M4 LINE L1 -1002 5144 5013 2258 93 17 0 chr3 144904805 144905094 -82619484 - AluSx SINE Alu -18 294 1 230 216 0 0 chr3 144905125 144905162 -82619416 - Alu SINE Alu -10 165 129 689 174 0 0 chr3 144905162 144905271 -82619307 - FLAM_A SINE Alu -33 109 1 1637 131 27 4 chr3 144905278 144905537 -82619041 - AluSx SINE Alu -15 297 33 243 0 0 0 chr3 144905679 144905706 -82618872 + (A)n Simple_repeat Simple_repeat 1 27 0 883 115 0 83 chr3 144906328 144906484 -82618094 - FLAM_C SINE Alu 0 143 1 212 157 39 0 chr3 144906566 144906617 -82617961 + (CATA)n Simple_repeat Simple_repeat 2 54 0 822 157 0 57 chr3 144906617 144906757 -82617821 - AluJ SINE Alu -15 297 166 4533 102 23 119 chr3 144906757 144907666 -82616912 - LTR12 LTR ERV1 0 826 5 2088 200 26 34 chr3 144907682 144908263 -82616315 - pTR5 LTR ERV1 -1094 1344 769 366 157 109 0 chr3 144908273 144908341 -82616237 - AluJo SINE Alu -133 169 104 327 303 68 0 chr3 144908341 144908473 -82616105 + L1M4 LINE L1 1145 1285 -5257 465 198 12 0 chr3 144908473 144908559 -82616019 + AluJ/FLAM SINE Alu 2 88 -224 273 296 201 11 chr3 144910450 144910629 -82613949 - MIR SINE MIR -29 233 21 220 164 73 0 chr3 144911004 144911059 -82613519 + L2 LINE L2 1992 2050 -1264 2030 125 0 75 chr3 144912963 144913298 -82611280 - AluSx SINE Alu -2 310 1 607 254 66 33 chr3 144913439 144913606 -82610972 + L1ME3A LINE L1 5432 5592 -578 2027 158 29 8 chr3 144913606 144913986 -82610592 + MLT1B LTR MaLR 3 390 0 607 254 66 33 chr3 144913986 144914343 -82610235 + L1ME3A LINE L1 5592 6161 -9 535 184 0 19 chr3 144914607 144914710 -82609868 - FRAM SINE Alu -17 159 59 563 100 11 11 chr3 144914839 144914929 -82609649 + AluSg/x SINE Alu 206 295 -15 2220 108 83 43 chr3 144914929 144915202 -82609376 + MER41C LTR ERV1 142 437 -117 2171 111 3 10 chr3 144915202 144915500 -82609078 - AluSp SINE Alu -17 296 1 2220 108 83 43 chr3 144915500 144915623 -82608955 + MER41C LTR ERV1 437 554 0 8307 91 8 13 chr3 144915646 144916526 -82608052 + PRIMA41-int LTR ERV1 1470 2345 -5411 2256 101 7 10 chr3 144916526 144916833 -82607745 - AluY SINE Alu -1 310 5 8307 91 8 13 chr3 144916833 144917145 -82607433 + PRIMA41-int LTR ERV1 2345 2657 -5099 2255 117 13 0 chr3 144917145 144917453 -82607125 + AluSx SINE Alu 1 312 0 473 114 0 13 chr3 144917471 144917550 -82607028 + (GAAA)n Simple_repeat Simple_repeat 3 80 0 711 106 26 9 chr3 144917553 144917666 -82606912 + PRIMA41-int LTR ERV1 2642 2756 -5000 438 278 69 46 chr3 144917783 144917896 -82606682 - MIR SINE MIR -30 232 123 2002 141 10 13 chr3 144917896 144918195 -82606383 + AluSq SINE Alu 1 298 -15 438 278 69 46 chr3 144918195 144918297 -82606281 - MIR SINE MIR -139 123 12 225 0 0 0 chr3 144918343 144918368 -82606210 + (TTTA)n Simple_repeat Simple_repeat 1 25 0 2036 95 25 39 chr3 144918368 144918653 -82605925 - AluSq SINE Alu -32 281 1 1892 146 23 39 chr3 144918657 144918966 -82605612 - AluJb SINE Alu -8 304 1 22 0 0 0 chr3 144919220 144919242 -82605336 + AT_rich Low_complexity Low_complexity 1 22 0 834 142 128 7 chr3 144919933 144920074 -82604504 + AluSx SINE Alu 1 158 -154 1841 126 36 18 chr3 144920383 144920511 -82604067 + AluSx SINE Alu 1 125 -188 2246 120 0 0 chr3 144920511 144920812 -82603766 + AluSg SINE Alu 1 301 -9 1841 126 36 18 chr3 144920812 144920991 -82603587 + AluSx SINE Alu 125 313 0 2132 118 30 0 chr3 144920998 144921294 -82603284 + AluSx SINE Alu 1 305 -7 1067 186 0 130 chr3 144921297 144921470 -82603108 + AluJo SINE Alu 2 111 -191 2262 102 7 3 chr3 144921470 144921765 -82602813 + AluSx SINE Alu 1 296 -16 1067 186 0 130 chr3 144921765 144921929 -82602649 + AluJo SINE Alu 111 295 -7 682 261 30 15 chr3 144922299 144922563 -82602015 + AluSc SINE Alu 37 304 -5 686 267 52 59 chr3 144922767 144922880 -82601698 - L2 LINE L2 -174 3139 3027 712 224 12 24 chr3 144922880 144923045 -82601533 - FAM SINE Alu -9 166 4 686 267 52 59 chr3 144923045 144923355 -82601223 - L2 LINE L2 -286 3027 2723 479 45 0 15 chr3 144923359 144923426 -82601152 + (TG)n Simple_repeat Simple_repeat 2 67 0 1515 217 7 10 chr3 144923726 144924021 -82600557 - AluJo SINE Alu -13 299 6 742 185 15 0 chr3 144924023 144924158 -82600420 - AluJo SINE Alu -174 138 2 665 273 83 47 chr3 144924391 144924798 -82599780 + MLT1C LTR MaLR 42 463 -4 345 175 140 18 chr3 144924799 144924913 -82599665 - L1MC5 LINE L1 -332 7629 7502 1168 112 0 12 chr3 144924923 144925084 -82599494 - AluSg/x SINE Alu 0 312 154 335 181 54 49 chr3 144925104 144925207 -82599371 - AluS SINE Alu -242 57 1 320 202 20 40 chr3 144925275 144925374 -82599204 + MER5A DNA MER1_type 9 105 -84 472 200 56 16 chr3 144925442 144925567 -82599011 - L1MC5 LINE L1 -586 7375 7246 2244 111 3 7 chr3 144925607 144925914 -82598664 + AluSx SINE Alu 1 306 -6 460 146 68 97 chr3 144925915 144925952 -82598626 - MSTA LTR MaLR -34 394 357 1998 123 11 0 chr3 144925952 144926229 -82598349 + AluSx SINE Alu 2 281 -31 1032 58 32 0 chr3 144926231 144926386 -82598192 + (GGAAA)n Simple_repeat Simple_repeat 3 162 0 460 146 68 97 chr3 144926386 144926448 -82598130 - MSTA LTR MaLR -72 356 295 306 224 128 2 chr3 144926920 144927080 -82597498 - MLT1I LTR MaLR -2 407 194 28 79 0 0 chr3 144927132 144927195 -82597383 + AT_rich Low_complexity Low_complexity 1 63 0 462 202 129 32 chr3 144927240 144927364 -82597214 - MLT1I LTR MaLR -263 146 11 2402 82 0 7 chr3 144927527 144927831 -82596747 - AluY SINE Alu -9 302 1 2063 128 0 17 chr3 144927831 144928128 -82596450 - AluJb SINE Alu -10 302 11 1633 176 0 83 chr3 144928132 144928468 -82596110 - AluJb SINE Alu -4 308 1 596 164 30 22 chr3 144928513 144928647 -82595931 - FRAM SINE Alu -1 175 41 578 144 171 0 chr3 144928816 144928927 -82595651 + FLAM_C SINE Alu 1 130 -3 2141 82 75 3 chr3 144928937 144929219 -82595359 - AluSg SINE Alu -8 302 1 2244 102 0 10 chr3 144929351 144929645 -82594933 - AluSg SINE Alu -19 291 1 2215 113 7 0 chr3 144929700 144929992 -82594586 - AluSp SINE Alu -19 294 1 839 147 0 0 chr3 144930376 144930505 -82594073 - FLAM_C SINE Alu -4 129 1 525 201 35 53 chr3 144930512 144930681 -82593897 - AluJb SINE Alu -14 298 133 2127 128 7 7 chr3 144931163 144931461 -82593117 + AluSx SINE Alu 1 298 -14 1701 153 33 13 chr3 144931490 144931791 -82592787 + AluSq SINE Alu 1 307 -6 2014 123 3 3 chr3 144931804 144932089 -82592489 + AluSc SINE Alu 15 299 -10 1134 152 30 0 chr3 144932122 144932319 -82592259 + AluSx SINE Alu 1 203 -109 573 143 142 4 chr3 144932339 144932579 -82591999 + AluSg/x SINE Alu 93 288 -21 1786 147 33 7 chr3 144933111 144933383 -82591195 + AluSq SINE Alu 1 279 -34 2183 110 7 0 chr3 144933385 144933676 -82590902 + AluSg1 SINE Alu 1 293 -16 354 306 88 20 chr3 144933677 144933824 -82590754 + MLT1J LTR MaLR 217 373 -138 525 133 0 0 chr3 144933853 144933928 -82590650 + AluS SINE Alu 2 76 -237 511 231 44 97 chr3 144933973 144934271 -82590307 + MLT1J LTR MaLR 30 311 -200 404 203 0 0 chr3 144934445 144934524 -82590054 + MER41B LTR ERV1 556 634 -1 974 163 6 0 chr3 144934524 144934684 -82589894 - AluJb SINE Alu -151 161 1 896 174 52 38 chr3 144934684 144934897 -82589681 - L1MC4a LINE L1 -375 7433 7218 1221 151 0 24 chr3 144934900 144935077 -82589501 - AluSg/x SINE Alu -2 310 137 2261 79 3 7 chr3 144935077 144935390 -82589188 - AluSx SINE Alu 0 312 1 1221 151 0 24 chr3 144935390 144935417 -82589161 - AluSg/x SINE Alu -175 137 111 359 253 0 0 chr3 144935418 144935509 -82589069 - L1MD3 LINE L1 -746 7249 7159 2378 50 47 10 chr3 144935661 144935961 -82588617 + AluY SINE Alu 1 311 0 25 31 0 0 chr3 144936340 144936372 -82588206 + GC_rich Low_complexity Low_complexity 1 32 0 185 204 136 68 chr3 144937764 144937852 -82586726 - MIR SINE MIR -109 153 60 2213 112 3 16 chr3 144939510 144939813 -82584765 - AluSx SINE Alu -13 299 1 2438 80 3 6 chr3 144939815 144940126 -82584452 - AluY SINE Alu -1 310 1 2184 114 0 10 chr3 144940319 144940617 -82583961 - AluSx SINE Alu -15 297 3 818 282 57 12 chr3 144941498 144941746 -82582832 + MIR SINE MIR 2 260 -2 1242 146 11 0 chr3 144942921 144943106 -82581472 + AluSg/x SINE Alu 118 304 -6 928 191 10 10 chr3 144943112 144943316 -82581262 + MSTB2 LTR MaLR 57 260 -197 696 69 0 0 chr3 144943318 144943405 -82581173 - AluSg/x SINE Alu -142 168 82 2016 153 113 5 chr3 144943405 144943611 -82580967 - MER6A DNA MER2_type -423 442 260 234 0 0 0 chr3 144943611 144943637 -82580941 + (CA)n Simple_repeat Simple_repeat 1 26 0 2016 153 113 5 chr3 144943637 144943828 -82580750 - MER6A DNA MER2_type -605 260 2 230 236 91 0 chr3 144944354 144944409 -82580169 + MER2 DNA MER2_type 2 61 -284 518 297 14 7 chr3 144944581 144944719 -82579859 - L2 LINE L2 -23 3290 3152 1364 151 8 60 chr3 144944728 144944979 -82579599 + AluJb SINE Alu 36 273 -39 725 154 15 15 chr3 144945101 144945231 -82579347 - MSTB LTR MaLR -294 132 3 524 242 96 0 chr3 144945244 144945422 -82579156 - L1MC5 LINE L1 -1134 6827 6633 2343 99 3 0 chr3 144945468 144945770 -82578808 + AluSx SINE Alu 1 303 -9 2212 100 36 0 chr3 144946283 144946564 -82578014 - AluSq SINE Alu -22 291 1 1964 115 7 17 chr3 144946567 144946855 -82577723 - AluSq SINE Alu -18 295 11 216 291 64 45 chr3 144947098 144947208 -82577370 + MIR SINE MIR 74 185 -77 454 252 8 8 chr3 144947212 144947331 -82577247 + FLAM_C SINE Alu 2 120 -23 200 143 127 63 chr3 144947526 144947589 -82576989 + MIR SINE MIR 92 158 -104 201 74 0 0 chr3 144947626 144947653 -82576925 + (TG)n Simple_repeat Simple_repeat 1 27 0 2201 106 3 7 chr3 144947674 144947958 -82576620 - AluSp SINE Alu -30 283 1 1125 96 0 0 chr3 144947958 144948093 -82576485 - AluJb SINE Alu -177 135 1 1000 195 11 0 chr3 144948100 144948274 -82576304 - 7SLRNA srpRNA srpRNA -11 309 134 2199 118 0 3 chr3 144948276 144948580 -82575998 - AluSq SINE Alu -4 309 7 1871 119 4 4 chr3 144948580 144948831 -82575747 - AluSc SINE Alu -56 253 1 272 345 36 9 chr3 144949502 144949612 -82574966 - L2 LINE L2 -1 3312 3200 2126 131 3 29 chr3 144949898 144950159 -82574419 - AluSx SINE Alu -6 306 53 2538 73 0 13 chr3 144950159 144950472 -82574106 - AluSp SINE Alu -4 309 1 2126 131 3 29 chr3 144950472 144950524 -82574054 - AluSx SINE Alu -259 53 1 2529 58 3 0 chr3 144950535 144950830 -82573748 - AluY SINE Alu -15 296 1 352 114 0 43 chr3 144951788 144951858 -82572720 - AluJ/FLAM SINE Alu -234 68 2 1974 101 0 4 chr3 144951913 144952171 -82572407 - AluSg SINE Alu -18 292 36 489 288 139 52 chr3 144952196 144952395 -82572183 - L1ME LINE L1 -302 5819 5582 1686 169 46 23 chr3 144952395 144952697 -82571881 + AluJb SINE Alu 1 309 -3 489 288 139 52 chr3 144952697 144952806 -82571772 - L1ME LINE L1 -539 5582 5484 2361 100 0 0 chr3 144953016 144953306 -82571272 + AluSx SINE Alu 2 291 -21 300 309 43 37 chr3 144953344 144953506 -82571072 + MIR SINE MIR 68 230 -32 298 240 123 26 chr3 144953528 144953682 -82570896 - L1ME4a LINE L1 -224 5897 5729 343 259 30 23 chr3 144954218 144954349 -82570229 - L1MD2 LINE L1 -196 6163 6032 283 307 20 13 chr3 144954723 144954873 -82569705 - L1MC4a LINE L1 -1844 5964 5814 313 347 181 10 chr3 144954983 144955182 -82569396 - L1MC4a LINE L1 -1762 6046 5814 2188 118 3 0 chr3 144955195 144955484 -82569094 - AluSx SINE Alu -22 290 1 382 258 5 8 chr3 144955497 144955635 -82568943 - L1MC4a LINE L1 -352 5822 5696 2224 109 3 13 chr3 144956422 144956596 -82567982 - AluSq SINE Alu -5 308 137 2273 90 0 13 chr3 144956596 144956897 -82567681 - AluSc SINE Alu -12 297 1 2224 109 3 13 chr3 144956897 144957033 -82567545 - AluSq SINE Alu -176 137 1 1613 163 51 30 chr3 144957300 144957595 -82566983 - AluJo SINE Alu -11 301 1 405 167 13 0 chr3 144958130 144958208 -82566370 - MER53 DNA DNA 0 189 111 2358 102 0 0 chr3 144958656 144958949 -82565629 - AluSp SINE Alu -20 293 1 273 104 0 42 chr3 144958977 144959025 -82565553 + MLT1A1 LTR MaLR 1 46 -328 1352 216 27 27 chr3 144959252 144959580 -82564998 + MLT1A1 LTR MaLR 38 365 0 642 72 0 31 chr3 144960166 144960263 -82564315 - AluS SINE Alu -218 95 2 24 0 0 0 chr3 144960622 144960646 -82563932 + AT_rich Low_complexity Low_complexity 1 24 0 2598 57 0 0 chr3 144960790 144961090 -82563488 + AluY SINE Alu 1 300 -11 1579 195 3 17 chr3 144961734 144962032 -82562546 - AluSg SINE Alu -16 294 1 609 246 0 0 chr3 144962049 144962179 -82562399 - FLAM_A SINE Alu -2 131 2 241 136 85 0 chr3 144962665 144962724 -82561854 - L1MC4a LINE L1 -327 7481 7418 2180 133 0 3 chr3 144962725 144963033 -82561545 - AluSx SINE Alu -5 307 1 1890 181 3 7 chr3 144963033 144963342 -82561236 - AluJo SINE Alu -4 308 1 796 163 52 0 chr3 144963342 144963477 -82561101 - FRAM SINE Alu -16 160 19 689 139 9 0 chr3 144963477 144963585 -82560993 + MER41A LTR ERV1 3 111 -443 3019 114 11 4 chr3 144963598 144964061 -82560517 - LTR12 LTR ERV1 -23 691 226 420 227 36 132 chr3 144964171 144964352 -82560226 - L1M4b LINE L1 -5412 1447 1250 2089 121 7 3 chr3 144964352 144964650 -82559928 - AluSx SINE Alu -13 299 1 420 227 36 132 chr3 144964650 144964661 -82559917 - L1M4b LINE L1 -5609 1250 1240 2556 61 3 7 chr3 144964661 144964971 -82559607 - AluY SINE Alu -2 309 1 420 227 36 132 chr3 144964971 144965028 -82559550 - L1M4b LINE L1 -5619 1240 1221 2100 123 10 3 chr3 144965035 144965337 -82559241 - AluSp SINE Alu -5 308 5 2077 151 3 3 chr3 144965366 144965678 -82558900 - AluSx SINE Alu 0 312 1 873 182 19 0 chr3 144965708 144965862 -82558716 + FRAM SINE Alu 12 168 -8 461 196 0 0 chr3 144965862 144965954 -82558624 + L1M4c LINE L1 1035 1126 -5258 227 118 39 0 chr3 144966003 144966054 -82558524 - L1MA7 LINE L1 -146 6145 6093 1408 186 7 21 chr3 144966561 144966852 -82557726 - AluSq SINE Alu -26 287 1 4926 134 61 28 chr3 144967053 144967427 -82557151 - L1MC1 LINE L1 -1 6332 5972 2208 111 7 3 chr3 144967427 144967724 -82556854 - AluSx SINE Alu -14 298 1 4926 134 61 28 chr3 144967724 144967848 -82556730 - L1MC1 LINE L1 -361 5972 5854 1507 182 20 24 chr3 144967848 144968144 -82556434 + AluJo SINE Alu 1 295 -17 4926 134 61 28 chr3 144968144 144968621 -82555957 - L1MC1 LINE L1 -479 5854 5323 476 131 39 124 chr3 144968622 144968775 -82555803 - AluJb SINE Alu -9 303 164 183 220 0 0 chr3 144969028 144969078 -82555500 + C-rich Low_complexity Low_complexity 1 50 0 535 274 50 33 chr3 144970387 144970686 -82553892 - L1MC5 LINE L1 -32 7929 7626 793 159 44 53 chr3 144970686 144970913 -82553665 + MLT1B LTR MaLR 1 225 -165 197 310 235 3 chr3 144971052 144971384 -82553194 - L2 LINE L2 -674 2640 2232 1117 150 0 6 chr3 144971695 144971868 -82552710 - AluSg/x SINE Alu -8 304 133 2257 119 0 0 chr3 144971904 144972197 -82552381 + AluSx SINE Alu 1 293 -19 1562 81 18 9 chr3 144972393 144972616 -82551962 + AluY SINE Alu 3 227 -84 263 246 218 27 chr3 144973297 144973407 -82551171 + MIR SINE MIR 107 237 -25 426 267 99 0 chr3 144973525 144973656 -82550922 - MIR SINE MIR -21 241 98 2201 113 26 0 chr3 144973675 144973977 -82550601 + AluSg SINE Alu 1 310 0 382 164 0 0 chr3 144973977 144974063 -82550515 + L1MC4a LINE L1 7246 7302 -506 667 200 39 0 chr3 144974075 144974205 -82550373 + FRAM SINE Alu 11 145 -31 988 57 90 0 chr3 144974232 144974376 -82550202 + AluSp/q SINE Alu 158 312 0 1280 184 29 54 chr3 144974606 144974884 -82549694 + AluJo SINE Alu 12 282 -30 2378 83 3 3 chr3 144974914 144975216 -82549362 + AluSc SINE Alu 2 303 -6 970 200 0 0 chr3 144975219 144975379 -82549199 + AluJo/FRAM SINE Alu 137 296 -6 674 304 210 11 chr3 144975379 144975767 -82548811 - L2 LINE L2 -94 3219 2740 1606 173 26 35 chr3 144975807 144975991 -82548587 - AluJb SINE Alu -3 309 128 2321 108 7 0 chr3 144975991 144976296 -82548282 - AluSg SINE Alu -3 307 1 1606 173 26 35 chr3 144976296 144976423 -82548155 - AluJb SINE Alu -184 128 1 681 223 8 0 chr3 144976448 144976578 -82548000 - FLAM_C SINE Alu -2 131 1 507 129 12 12 chr3 144976764 144976849 -82547729 + AluY SINE Alu 217 301 -10 1169 134 109 5 chr3 144976855 144977056 -82547522 + AluSp SINE Alu 2 223 -90 216 0 0 0 chr3 144977067 144977091 -82547487 + (A)n Simple_repeat Simple_repeat 1 24 0 2409 90 7 0 chr3 144977091 144977401 -82547177 + AluSq SINE Alu 1 312 -1 2308 93 7 7 chr3 144977414 144977716 -82546862 + AluSg SINE Alu 1 302 -8 536 239 19 31 chr3 144977831 144977990 -82546588 + MSTC LTR MaLR 1 157 -271 306 272 34 0 chr3 144978123 144978270 -82546308 - AluYa5 SINE Alu -4 297 146 2232 116 7 3 chr3 144978861 144979162 -82545416 + AluSx SINE Alu 3 304 -8 1984 150 7 0 chr3 144979222 144979516 -82545062 + AluJb SINE Alu 1 296 -16 1697 142 0 0 chr3 144979540 144979779 -82544799 + AluSx SINE Alu 42 280 -32 725 75 0 9 chr3 144979782 144979888 -82544690 + (GAAA)n Simple_repeat Simple_repeat 4 108 0 1632 168 42 11 chr3 144980352 144980637 -82543941 + AluJo SINE Alu 6 299 -13 249 263 126 0 chr3 144981005 144981100 -82543478 - Charlie8 DNA MER1_type -2185 232 126 665 122 9 0 chr3 144981345 144981452 -82543126 - AluSq/x SINE Alu -204 109 2 222 295 107 9 chr3 144981469 144981581 -82542997 + MIR SINE MIR 140 262 0 2183 155 0 0 chr3 144981751 144981776 -82542802 - AluSx SINE Alu -2 310 286 401 0 20 0 chr3 144981776 144981825 -82542753 + (TG)n Simple_repeat Simple_repeat 1 50 0 2183 155 0 0 chr3 144981825 144982109 -82542469 - AluSx SINE Alu -25 287 1 498 270 53 20 chr3 144982110 144982262 -82542316 + MIR SINE MIR 101 257 -5 693 186 45 26 chr3 144982555 144982711 -82541867 + LTR54B LTR ERV1 297 455 -43 724 262 12 6 chr3 144982711 144982879 -82541699 - FRAM SINE Alu -15 161 1 483 221 76 0 chr3 144982912 144983043 -82541535 + L1M4 LINE L1 5202 5342 -804 3499 201 65 35 chr3 144983074 144983464 -82541114 - MER21B LTR ERV1 0 863 486 1892 134 0 14 chr3 144983464 144983755 -82540823 + AluSx SINE Alu 23 309 -3 3499 201 65 35 chr3 144983755 144984185 -82540393 - MER21B LTR ERV1 -377 486 19 278 203 172 109 chr3 144984937 144985003 -82539575 - MIR SINE MIR -2 260 200 2197 79 16 10 chr3 144985003 144985307 -82539271 - AluSp SINE Alu -7 306 1 278 203 172 109 chr3 144985307 144985368 -82539210 - MIR SINE MIR -62 200 125 381 262 131 36 chr3 144985756 144985924 -82538654 - MIR SINE MIR -12 250 67 369 223 46 54 chr3 144986013 144986143 -82538435 - MER5A DNA MER1_type -26 163 35 346 277 44 44 chr3 144986026 144986163 -82538415 + MER5A DNA MER1_type 50 186 -3 * 1961 91 0 14 chr3 144986451 144986736 -82537842 + AluSc SINE Alu 2 282 -27 2092 113 3 16 chr3 144987264 144987573 -82537005 - AluSq SINE Alu -8 305 1 312 279 59 64 chr3 144987581 144987785 -82536793 - L1ME3A LINE L1 0 6170 5968 1158 176 9 5 chr3 144987909 144988119 -82536459 - AluSq SINE Alu -70 243 33 1012 92 21 0 chr3 144991158 144991300 -82533278 - AluSc SINE Alu -19 290 146 2031 116 0 28 chr3 144991492 144991812 -82532766 - AluY SINE Alu 0 311 1 2221 96 13 0 chr3 144991813 144992115 -82532463 - AluSp SINE Alu -7 306 1 405 234 234 34 chr3 144992133 144992308 -82532270 + L1ME4a LINE L1 5724 5933 -188 2151 104 0 10 chr3 144992376 144992675 -82531903 - AluSx SINE Alu -16 296 1 221 337 60 0 chr3 144992878 144992961 -82531617 - MIR3 SINE MIR -7 201 114 1079 99 20 0 chr3 144993214 144993366 -82531212 - AluSq SINE Alu -158 155 1 2027 125 3 7 chr3 144993418 144993723 -82530855 - AluSx SINE Alu -8 304 1 2267 91 0 3 chr3 144993771 144994080 -82530498 - AluY SINE Alu -3 308 1 1781 78 0 8 chr3 144994707 144994950 -82529628 - AluY SINE Alu -70 241 1 932 207 24 111 chr3 144994950 144995284 -82529294 - MLT1A1 LTR MaLR -60 305 1 1594 127 7 45 chr3 144995382 144995690 -82528888 - AluSp SINE Alu -17 296 1 1227 96 6 11 chr3 144996976 144997153 -82527425 + AluSp SINE Alu 1 176 -137 316 35 18 44 chr3 144997267 144997324 -82527254 + AluSq/x SINE Alu 85 133 -170 2215 101 3 0 chr3 144997338 144997636 -82526942 + AluSp SINE Alu 1 299 -14 1279 205 9 66 chr3 144997639 144997787 -82526791 + AluSx SINE Alu 2 124 -178 207 0 0 0 chr3 144997787 144997810 -82526768 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 1279 205 9 66 chr3 144997810 144997978 -82526600 + AluSx SINE Alu 124 300 -2 231 94 38 19 chr3 144998058 144998111 -82526467 + (CTA)n Simple_repeat Simple_repeat 3 56 0 613 250 26 60 chr3 144999016 144999109 -82525469 - MLT1K LTR MaLR -15 573 478 2349 69 7 0 chr3 144999109 144999412 -82525166 + AluY SINE Alu 1 305 -6 613 250 26 60 chr3 144999412 144999550 -82525028 - MLT1K LTR MaLR -110 478 350 504 0 0 0 chr3 144999600 144999656 -82524922 + (CA)n Simple_repeat Simple_repeat 1 56 0 438 176 10 0 chr3 144999877 144999975 -82524603 + MLT1J LTR MaLR 111 273 -332 519 17 0 0 chr3 145000140 145000200 -82524378 + (TCTA)n Simple_repeat Simple_repeat 4 63 0 201 211 35 0 chr3 145000208 145000265 -82524313 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 26 64 0 0 chr3 145000876 145000923 -82523655 + GC_rich Low_complexity Low_complexity 1 47 0 1277 164 0 48 chr3 145001251 145001368 -82523210 - AluJo SINE Alu -74 238 138 1899 153 0 3 chr3 145001368 145001662 -82522916 - AluJb SINE Alu -19 293 1 1277 164 0 48 chr3 145001662 145001794 -82522784 - AluJo SINE Alu -174 138 1 444 165 29 10 chr3 145001794 145001897 -82522681 - L1MC4 LINE L1 -451 7591 7487 197 322 74 54 chr3 145001927 145002001 -82522577 + L2 LINE L2 3107 3178 -94 2266 82 0 13 chr3 145002001 145002304 -82522274 - AluSg SINE Alu -11 299 1 197 322 74 54 chr3 145002304 145002378 -82522200 + L2 LINE L2 3178 3258 -14 723 223 89 15 chr3 145003063 145003265 -82521313 + MIR SINE MIR 14 230 -32 1791 131 38 3 chr3 145003404 145003695 -82520883 - AluSg SINE Alu -9 301 1 295 301 56 103 chr3 145003713 145003780 -82520798 - MIR SINE MIR 0 262 193 896 128 0 0 chr3 145003780 145003905 -82520673 - FLAM_C SINE Alu -8 125 1 295 301 56 103 chr3 145003905 145004050 -82520528 - MIR SINE MIR -69 193 60 375 274 137 13 chr3 145004692 145004845 -82519733 + L3 LINE CR1 1297 1468 -109 477 327 69 10 chr3 145005018 145005220 -82519358 + MIR SINE MIR 1 214 -48 190 316 0 0 chr3 145005255 145005312 -82519266 + MIR SINE MIR 94 150 -58 501 349 35 22 chr3 145005466 145005695 -82518883 - MIR SINE MIR 0 262 31 843 187 0 0 chr3 145006115 145006249 -82518329 - AluJo SINE Alu -177 135 2 259 304 99 35 chr3 145007435 145007636 -82516942 - MIR SINE MIR -1 261 48 866 267 234 19 chr3 145008079 145008446 -82516132 + MLT1K LTR MaLR 137 582 -6 552 307 154 29 chr3 145009898 145010243 -82514335 + MLT1K LTR MaLR 180 567 -21 2181 73 27 23 chr3 145010844 145011144 -82513434 - AluSp SINE Alu -12 301 1 1895 150 0 25 chr3 145011903 145012217 -82512361 - AluJb SINE Alu -6 306 1 290 240 90 18 chr3 145012295 145012460 -82512118 + LTR33A LTR ERVL 356 540 -17 230 375 45 18 chr3 145012793 145012905 -82511673 - L2 LINE L2 -54 3218 3104 22 35 0 0 chr3 145013843 145013872 -82510706 + GC_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 145013920 145013942 -82510636 + GC_rich Low_complexity Low_complexity 1 22 0 194 270 126 18 chr3 145017608 145017719 -82506859 + L3 LINE CR1 1330 1452 -125 1927 107 0 43 chr3 145017823 145018123 -82506455 + AluSg SINE Alu 1 287 -23 428 186 178 17 chr3 145018187 145018305 -82506273 - L2 LINE L2 -8 3305 3169 2130 79 26 13 chr3 145018435 145018738 -82505840 + AluY SINE Alu 2 308 -3 339 321 80 5 chr3 145018853 145019040 -82505538 + LTR16A LTR ERVL 18 218 -232 902 155 20 102 chr3 145019215 145019382 -82505196 + L1MB3 LINE L1 5958 6100 -83 894 127 0 0 chr3 145019382 145019508 -82505070 + AluJo SINE Alu 1 126 -176 902 155 20 102 chr3 145019508 145019585 -82504993 + L1MB3 LINE L1 6100 6182 -1 812 174 7 0 chr3 145019606 145019750 -82504828 + AluJo SINE Alu 122 266 -46 617 266 58 25 chr3 145019752 145020027 -82504551 + L1MC3 LINE L1 7001 7284 -501 201 121 0 0 chr3 145020373 145020406 -82504172 + (CCCCAG)n Simple_repeat Simple_repeat 1 33 0 416 224 121 0 chr3 145020516 145020632 -82503946 + L2 LINE L2 3181 3310 -3 246 32 0 0 chr3 145020634 145020665 -82503913 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 321 312 287 5 chr3 145020740 145021141 -82503437 + L2 LINE L2 2750 3273 -40 237 269 15 0 chr3 145021832 145021899 -82502679 + MIR SINE MIR 70 137 -71 387 264 19 0 chr3 145022025 145022131 -82502447 + Charlie8 DNA MER1_type 83 190 -2227 372 291 7 61 chr3 145022326 145022474 -82502104 - L2 LINE L2 0 3272 3133 222 284 53 42 chr3 145022578 145022673 -82501905 - L2 LINE L2 -35 3278 3183 279 221 129 31 chr3 145022768 145022931 -82501647 + L1MC4a LINE L1 5264 5442 -2366 500 196 42 14 chr3 145022931 145023074 -82501504 + L1MB7 LINE L1 6038 6184 0 389 353 65 43 chr3 145023070 145023605 -82500973 + L1MC4a LINE L1 5420 5966 -1842 * 497 68 14 0 chr3 145023757 145023831 -82500747 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 318 343 30 57 chr3 145023871 145024171 -82500407 + L1ME LINE L1 5413 5704 -458 338 270 10 10 chr3 145024706 145024806 -82499772 + MIR SINE MIR 22 121 -141 532 338 69 20 chr3 145024972 145025342 -82499236 - L1MC4a LINE L1 -154 5967 5584 517 330 21 7 chr3 145025571 145025862 -82498716 - L1ME4a LINE L1 -152 5969 5675 444 208 162 17 chr3 145025923 145026096 -82498482 + L1ME3A LINE L1 5957 6154 -16 1791 156 20 49 chr3 145026208 145026272 -82498306 - L1PA16 LINE L1 -3 6163 6099 1559 163 62 17 chr3 145026272 145026561 -82498017 + AluJb SINE Alu 1 302 -10 1791 156 20 49 chr3 145026561 145026843 -82497735 - L1PA16 LINE L1 -67 6099 5827 21 57 0 0 chr3 145027665 145027700 -82496878 + GC_rich Low_complexity Low_complexity 1 35 0 320 304 0 0 chr3 145028751 145028843 -82495735 + L2 LINE L2 3218 3309 -4 293 333 9 0 chr3 145029349 145029463 -82495115 + L1ME3A LINE L1 5471 5585 -577 547 279 42 0 chr3 145029563 145029753 -82494825 + L1ME3A LINE L1 5730 5927 -243 1286 220 16 45 chr3 145029829 145030207 -82494371 + L1MC4 LINE L1 7619 7985 -57 569 324 142 30 chr3 145030458 145030930 -82493648 - MLT1K LTR MaLR -62 526 2 1010 199 142 101 chr3 145031026 145031414 -82493164 + MLT1E2 LTR MaLR 17 420 -206 896 189 51 64 chr3 145031581 145031911 -82492667 - L1ME4a LINE L1 -634 5530 5203 * 1229 268 70 0 chr3 145031909 145032349 -82492229 + L1M4 LINE L1 3054 3524 -2622 2015 98 25 42 chr3 145032368 145032654 -82491924 + AluSq SINE Alu 1 281 -32 225 0 0 0 chr3 145032654 145032679 -82491899 + (TAAA)n Simple_repeat Simple_repeat 1 25 0 2334 103 0 3 chr3 145032824 145033125 -82491453 - AluSg SINE Alu -10 300 1 2658 176 20 13 chr3 145034193 145034830 -82489748 + L1MB7 LINE L1 5193 5835 -349 1174 229 40 48 chr3 145036096 145036450 -82488128 + L1MB7 LINE L1 5818 6168 -16 517 254 23 8 chr3 145036461 145036591 -82487987 + MLT1J LTR MaLR 53 184 -327 2092 254 166 10 chr3 145037149 145037921 -82486657 - L1MEc LINE L1 -5474 922 31 540 298 5 48 chr3 145037921 145038109 -82486469 + ERVL LTR ERVL 1694 1873 -3891 699 281 130 0 chr3 145038109 145038401 -82486177 + MLT1K LTR MaLR 227 556 -32 1650 132 30 27 chr3 145038740 145039035 -82485543 - MSTA LTR MaLR 0 428 133 551 323 123 39 chr3 145039199 145039580 -82484998 - L1MEc LINE L1 -4213 2925 2513 610 239 74 23 chr3 145039589 145039765 -82484813 + MER77 LTR ERV1 415 599 -6 1563 290 41 32 chr3 145039843 145040430 -82484148 - L1MEc LINE L1 -5883 976 385 307 326 0 30 chr3 145042429 145042564 -82482014 + (CGGA)n Simple_repeat Simple_repeat 2 132 0 634 243 11 28 chr3 145042567 145042744 -82481834 + MIR SINE MIR 10 183 -79 852 230 2 2 chr3 145043494 145043970 -82480608 + (CCCA)n Simple_repeat Simple_repeat 1 476 0 5826 132 22 26 chr3 145044274 145045309 -82479269 - L1MC1 LINE L1 0 6333 5303 1211 181 3 75 chr3 145045310 145045603 -82478975 - AluJb SINE Alu -11 301 30 692 246 78 46 chr3 145045726 145045980 -82478598 - L1MC5 LINE L1 -78 7883 7612 1210 193 89 62 chr3 145045980 145046431 -82478147 + MLT1C LTR MaLR 1 463 -4 692 246 78 46 chr3 145046431 145046546 -82478032 - L1MC5 LINE L1 -349 7612 7502 1136 118 0 12 chr3 145046556 145046717 -82477861 - AluSg/x SINE Alu 0 312 154 320 161 18 0 chr3 145046737 145046793 -82477785 - AluS SINE Alu -243 57 1 320 202 20 40 chr3 145046908 145047007 -82477571 + MER5A DNA MER1_type 9 105 -84 479 200 56 16 chr3 145047075 145047200 -82477378 - L1MC5 LINE L1 -586 7375 7246 860 150 9 70 chr3 145047240 145047467 -82477111 + AluSq SINE Alu 1 213 -100 442 217 92 8 chr3 145048107 145048227 -82476351 - LTR16A LTR ERVL -52 398 269 726 302 85 30 chr3 145050606 145050843 -82473735 + Charlie8 DNA MER1_type 39 304 -2113 1914 128 64 4 chr3 145050843 145051124 -82473454 - AluSx SINE Alu -14 298 1 726 302 85 30 chr3 145051124 145051250 -82473328 + Charlie8 DNA MER1_type 304 422 -1995 23 33 0 0 chr3 145051931 145051961 -82472617 + AT_rich Low_complexity Low_complexity 1 30 0 330 277 18 0 chr3 145052118 145052230 -82472348 + L1M4 LINE L1 2949 3062 -3084 280 247 14 0 chr3 145052376 145052449 -82472129 + L2 LINE L2 1937 2010 -1304 725 244 61 20 chr3 145052478 145052675 -82471903 - MER63A DNA MER1_type 0 210 6 807 224 53 24 chr3 145052682 145052928 -82471650 + L2 LINE L2 2048 2300 -1014 344 240 66 16 chr3 145052972 145053093 -82471485 - L2 LINE L2 -817 2497 2371 2121 119 107 23 chr3 145053380 145053774 -82470804 - MER4C LTR ERV1 -38 427 1 2227 121 0 9 chr3 145053906 145054221 -82470357 - AluSx SINE Alu 0 312 1 2179 184 18 5 chr3 145054849 145055289 -82469289 - L1MB3 LINE L1 -24 6159 5714 946 188 0 6 chr3 145055313 145055473 -82469105 + AluJb SINE Alu 130 288 -24 189 147 0 0 chr3 145055474 145055508 -82469070 + (CAAT)n Simple_repeat Simple_repeat 4 37 0 1183 161 0 19 chr3 145056226 145056437 -82468141 + AluSg/x SINE Alu 92 298 -12 722 199 11 70 chr3 145056437 145056623 -82467955 - MER58A DNA MER1_type -4 220 46 1089 209 43 4 chr3 145056646 145056923 -82467655 - L1M4 LINE L1 -3539 2607 2320 213 104 87 17 chr3 145056955 145057070 -82467508 + (TA)n Simple_repeat Simple_repeat 1 123 0 315 174 41 58 chr3 145057073 145057194 -82467384 + (TATATG)n Simple_repeat Simple_repeat 1 119 0 2832 208 15 3 chr3 145057489 145058173 -82466405 + L1M4 LINE L1 3781 4472 -1674 1244 145 0 5 chr3 145058192 145058385 -82466193 + AluSp SINE Alu 122 313 0 1594 201 25 74 chr3 145058664 145059278 -82465300 - L1MB3 LINE L1 -851 5295 4771 2353 107 0 0 chr3 145059278 145059576 -82465002 - AluSc SINE Alu -11 298 1 1594 201 25 74 chr3 145059576 145059728 -82464850 - L1MB3 LINE L1 -1375 4771 4613 2194 223 85 27 chr3 145059983 145060615 -82463963 + L1MC3 LINE L1 7110 7778 -7 241 349 17 51 chr3 145060678 145060853 -82463725 + L1MEd LINE L1 1054 1222 -4897 621 36 12 0 chr3 145060855 145060938 -82463640 + AluY SINE Alu 2 85 -225 434 269 27 20 chr3 145061604 145061753 -82462825 + MIR SINE MIR 63 212 -50 361 227 49 92 chr3 145061883 145062068 -82462510 - MLT1L LTR MaLR -24 591 415 183 313 70 43 chr3 145062624 145062739 -82461839 - L2 LINE L2 -2 3270 3153 660 203 22 7 chr3 145062811 145062949 -82461629 + L1MB7 LINE L1 5449 5588 -596 863 122 8 0 chr3 145062971 145063094 -82461484 + FLAM_C SINE Alu 13 136 -7 1775 136 30 24 chr3 145063094 145063426 -82461152 + L1MB7 LINE L1 5579 5912 -272 376 303 154 0 chr3 145064022 145064197 -82460381 + MLT1K LTR MaLR 27 228 -360 338 275 135 41 chr3 145064239 145064483 -82460095 + MLT1K LTR MaLR 313 579 -9 558 254 40 17 chr3 145065132 145065309 -82459269 + MLT1G LTR MaLR 410 590 0 301 356 13 20 chr3 145065444 145065593 -82458985 + MIR SINE MIR 7 154 -108 1117 252 162 21 chr3 145065632 145066021 -82458557 - MLT1J LTR MaLR -65 446 3 221 179 0 0 chr3 145066150 145066189 -82458389 + L2 LINE L2 3216 3254 -18 182 257 143 48 chr3 145066289 145066394 -82458184 + L2 LINE L2 3105 3219 -94 824 264 156 16 chr3 145066404 145066783 -82457795 - LTR33A LTR ERVL -10 513 82 320 304 0 0 chr3 145066884 145066976 -82457602 + L2 LINE L2 3218 3309 -4 273 333 9 0 chr3 145067482 145067596 -82456982 + L1ME3A LINE L1 5471 5585 -577 561 268 42 0 chr3 145067696 145067886 -82456692 + L1ME3A LINE L1 5730 5927 -243 1358 215 16 42 chr3 145067962 145068339 -82456239 + L1MC4 LINE L1 7619 7985 -57 414 233 43 9 chr3 145071718 145071834 -82452744 - L2 LINE L2 -22 3291 3172 1834 139 47 36 chr3 145072720 145073021 -82451557 - AluJo SINE Alu -5 307 4 414 233 43 9 chr3 145074642 145074758 -82449820 - L2 LINE L2 -22 3291 3172 1847 141 46 36 chr3 145075645 145075949 -82448629 - AluJo SINE Alu -5 307 1 381 179 15 0 chr3 145075949 145076016 -82448562 - AluJ/FLAM SINE Alu -234 68 1 180 0 0 0 chr3 145076020 145076040 -82448538 + (TA)n Simple_repeat Simple_repeat 2 21 0 192 200 0 0 chr3 145076208 145076253 -82448325 + (TA)n Simple_repeat Simple_repeat 2 46 0 1059 194 38 17 chr3 145077632 145077925 -82446653 + AluJo SINE Alu 1 299 -3 203 236 14 0 chr3 145079529 145079601 -82444977 + (TG)n Simple_repeat Simple_repeat 2 74 0 22 0 0 0 chr3 145080290 145080312 -82444266 + AT_rich Low_complexity Low_complexity 1 22 0 834 217 6 6 chr3 145082274 145082454 -82442124 + MER3 DNA MER1_type 30 209 0 187 256 0 0 chr3 145082620 145082659 -82441919 + MIR SINE MIR 109 147 -61 214 241 0 17 chr3 145082854 145082912 -82441666 + G-rich Low_complexity Low_complexity 5 61 0 355 282 87 74 chr3 145085546 145085950 -82438628 + L1MC1 LINE L1 5256 5664 -2144 2401 72 0 3 chr3 145085992 145086298 -82438280 - AluY SINE Alu -6 305 1 499 104 21 62 chr3 145086458 145086554 -82438024 + L1MC1 LINE L1 6238 6329 -4 201 176 0 0 chr3 145086983 145087017 -82437561 + (CAT)n Simple_repeat Simple_repeat 3 36 0 362 267 118 43 chr3 145087018 145087179 -82437399 + MIR SINE MIR 18 190 -72 638 244 12 12 chr3 145087200 145087360 -82437218 + L2 LINE L2 2883 3042 -271 182 33 67 0 chr3 145087374 145087404 -82437174 + T-rich Low_complexity Low_complexity 2 33 0 2177 66 30 13 chr3 145087408 145087711 -82436867 - AluY SINE Alu 0 311 4 289 187 22 44 chr3 145087842 145087933 -82436645 + L2 LINE L2 3169 3257 -56 250 208 0 28 chr3 145088145 145088217 -82436361 + L1MB8 LINE L1 6108 6177 -1 * 472 343 86 38 chr3 145088213 145088877 -82435701 + L1MC4a LINE L1 5420 6115 -1693 344 71 18 0 chr3 145088890 145088946 -82435632 + (TAGA)n Simple_repeat Simple_repeat 4 60 0 437 364 32 5 chr3 145089089 145089306 -82435272 + L1ME LINE L1 5495 5717 -453 823 136 12 22 chr3 145089319 145089529 -82435049 + AluJo SINE Alu 85 309 -3 433 352 53 28 chr3 145089728 145090049 -82434529 + L1MC/D LINE L1 4422 4750 -1396 902 258 98 34 chr3 145090341 145090869 -82433709 + MLT1E3 LTR MaLR 56 623 -1 1034 173 79 24 chr3 145091088 145091584 -82432994 + L1MB7 LINE L1 5594 6173 -11 1050 173 79 24 chr3 145092299 145092795 -82431783 + L1MB7 LINE L1 5594 6173 -11 188 67 33 0 chr3 145093072 145093102 -82431476 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 535 167 0 0 chr3 145093144 145093222 -82431356 - AluS SINE Alu -233 79 2 24 0 0 0 chr3 145093255 145093279 -82431299 + AT_rich Low_complexity Low_complexity 1 24 0 1852 141 0 27 chr3 145093284 145093581 -82430997 + AluJo SINE Alu 3 291 -21 285 29 0 0 chr3 145093582 145093616 -82430962 + (TA)n Simple_repeat Simple_repeat 1 34 0 279 0 0 0 chr3 145093615 145093646 -82430932 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 417 278 103 61 chr3 145093862 145094451 -82430127 + L1MC/D LINE L1 5061 5664 -750 2346 69 7 0 chr3 145094493 145094796 -82429782 - AluY SINE Alu -6 305 1 255 269 32 11 chr3 145094796 145094889 -82429689 + MLT1K LTR MaLR 479 573 -15 242 281 74 52 chr3 145098164 145098299 -82426279 - L2 LINE L2 -93 3220 3083 352 287 75 63 chr3 145099303 145099477 -82425101 - L1MC/D LINE L1 -2059 5749 5574 2099 91 3 3 chr3 145100940 145101225 -82423353 - AluY SINE Alu -13 298 14 314 319 29 29 chr3 145101334 145101472 -82423106 + MIR3 SINE MIR 13 150 -58 250 113 113 25 chr3 145102163 145102243 -82422335 + L1MA9 LINE L1 5890 5976 -336 322 338 60 53 chr3 145102396 145102727 -82421851 + HAL1 LINE L1 1013 1303 -1204 211 226 19 19 chr3 145102727 145102780 -82421798 + GA-rich Low_complexity Low_complexity 1 53 0 2188 176 16 8 chr3 145102869 145103256 -82421322 + MLT1B LTR MaLR 1 390 0 252 327 19 19 chr3 145103266 145103370 -82421208 + L2 LINE L2 3201 3304 -9 233 297 68 0 chr3 145103385 145103459 -82421119 + L2 LINE L2 3155 3233 -39 183 42 0 0 chr3 145103577 145103601 -82420977 + (TCC)n Simple_repeat Simple_repeat 2 25 0 224 330 121 37 chr3 145104118 145104333 -82420245 + MIR SINE MIR 30 262 0 312 250 19 39 chr3 145104407 145104511 -82420067 + MIR3 SINE MIR 4 105 -103 1196 289 113 9 chr3 145104697 145105147 -82419431 + MLT1J LTR MaLR 1 497 -14 913 316 63 8 chr3 145105160 145105543 -82419035 + MLT1L LTR MaLR 195 598 -17 215 200 0 0 chr3 145105785 145105825 -82418753 + MIR SINE MIR 106 145 -63 319 239 26 68 chr3 145106036 145106153 -82418425 + MLT1K LTR MaLR 161 272 -316 452 213 14 21 chr3 145106307 145106595 -82417983 + C-rich Low_complexity Low_complexity 1 285 0 342 272 25 0 chr3 145107519 145107600 -82416978 + L2 LINE L2 2673 2755 -559 2063 129 50 47 chr3 145107638 145108001 -82416577 - THE1B LTR MaLR 0 364 1 298 207 33 33 chr3 145108054 145108175 -82416403 + (CCCA)n Simple_repeat Simple_repeat 2 122 0 272 154 60 51 chr3 145108313 145108430 -82416148 + (CACAC)n Simple_repeat Simple_repeat 2 119 0 365 333 79 16 chr3 145108648 145108837 -82415741 + L1M4 LINE L1 3080 3280 -2866 429 289 143 45 chr3 145108948 145109484 -82415094 + L2 LINE L2 2680 3272 0 339 279 10 10 chr3 145109540 145109644 -82414934 + MIR SINE MIR 89 192 -70 306 286 68 30 chr3 145110110 145110243 -82414335 - L1ME4a LINE L1 -4 6117 5980 474 240 0 18 chr3 145110601 145110876 -82413702 + C-rich Low_complexity Low_complexity 1 270 0 328 299 0 0 chr3 145110935 145111042 -82413536 + C-rich Low_complexity Low_complexity 1 107 0 241 133 0 50 chr3 145112034 145112094 -82412484 + (CCCCG)n Simple_repeat Simple_repeat 4 60 0 416 224 121 0 chr3 145112200 145112316 -82412262 + L2 LINE L2 3181 3310 -3 246 32 0 0 chr3 145112318 145112349 -82412229 + (TGGA)n Simple_repeat Simple_repeat 1 31 0 295 325 273 3 chr3 145112423 145112862 -82411716 + L2 LINE L2 2750 3313 0 787 224 13 0 chr3 145116417 145116573 -82408005 + AluJb SINE Alu 136 293 -19 321 298 72 72 chr3 145116625 145116971 -82407607 + L1M2 LINE L1 1662 2007 -4842 302 178 27 70 chr3 145120791 145120976 -82403602 + (CCCA)n Simple_repeat Simple_repeat 1 177 0 468 324 53 22 chr3 145121418 145121643 -82402935 + MIR SINE MIR 10 241 -21 809 311 20 38 chr3 145121740 145122084 -82402494 - L1ME LINE L1 -399 5722 5385 275 219 0 27 chr3 145122531 145122604 -82401974 + L2 LINE L2 3155 3225 -47 340 315 3 39 chr3 145124526 145124796 -82399782 + C-rich Low_complexity Low_complexity 1 260 0 3347 262 80 8 chr3 145124916 145125568 -82399010 - L1ME LINE L1 -1897 4249 3645 240 35 0 0 chr3 145125568 145125597 -82398981 + (ATG)n Simple_repeat Simple_repeat 3 31 0 1644 139 40 7 chr3 145125600 145125874 -82398704 - AluJb SINE Alu -29 283 1 3347 262 80 8 chr3 145125874 145126333 -82398245 - L1ME LINE L1 -2502 3644 3054 2628 212 32 31 chr3 145126331 145127070 -82397508 + L1ME1 LINE L1 5203 5944 -222 * 319 65 65 0 chr3 145127106 145127152 -82397426 + L1MB7 LINE L1 6136 6184 0 33 0 0 0 chr3 145127193 145127226 -82397352 + AT_rich Low_complexity Low_complexity 1 33 0 2061 171 113 32 chr3 145127352 145127819 -82396759 + MLT1D LTR MaLR 1 505 0 719 176 95 0 chr3 145127819 145127967 -82396611 + L1ME1 LINE L1 5806 5967 -199 730 224 145 14 chr3 145128531 145128745 -82395833 - MIR SINE MIR -6 256 15 383 347 8 0 chr3 145128873 145128997 -82395581 + MIR3 SINE MIR 8 132 -76 816 255 49 25 chr3 145129000 145129348 -82395230 + MLT2C1 LTR ERVL 2 393 -4 274 215 46 0 chr3 145129836 145129901 -82394677 + L2 LINE L2 3014 3081 -232 877 133 14 7 chr3 145130009 145130152 -82394426 + MLT1D LTR MaLR 5 148 -357 490 273 250 6 chr3 145131035 145131190 -82393388 + L2 LINE L2 2538 2654 -618 1725 170 10 7 chr3 145131190 145131490 -82393088 + AluJb SINE Alu 1 301 -11 490 273 250 6 chr3 145131490 145131712 -82392866 + L2 LINE L2 2654 2998 -274 727 243 217 23 chr3 145132085 145132522 -82392056 + MLT1K LTR MaLR 58 579 -9 639 235 115 32 chr3 145132587 145133016 -82391562 + MLT1G LTR MaLR 73 590 0 348 304 27 27 chr3 145133151 145133299 -82391279 + MIR SINE MIR 7 154 -108 831 249 83 66 chr3 145133338 145133724 -82390854 - MLT1J LTR MaLR -65 446 6 280 281 211 24 chr3 145133952 145134198 -82390380 + L2 LINE L2 3019 3310 -3 235 342 36 18 chr3 145134729 145134840 -82389738 + L2 LINE L2 3134 3246 -26 254 278 28 0 chr3 145135270 145135342 -82389236 + MIR SINE MIR 27 100 -162 375 134 64 41 chr3 145136994 145137188 -82387390 + (CACAA)n Simple_repeat Simple_repeat 1 198 0 466 174 0 27 chr3 145137310 145137494 -82387084 + G-rich Low_complexity Low_complexity 1 179 0 205 337 168 26 chr3 145137639 145137829 -82386749 - MIR SINE MIR 0 262 46 379 360 94 30 chr3 145137907 145138249 -82386329 + HAL1b LINE L1 12 316 -1032 279 253 0 0 chr3 145138369 145138452 -82386126 - AluY SINE Alu -225 83 1 434 196 10 0 chr3 145138541 145138643 -82385935 + (TGG)n Simple_repeat Simple_repeat 2 104 0 726 198 0 0 chr3 145138656 145138833 -82385745 + (TGG)n Simple_repeat Simple_repeat 1 177 0 923 143 0 11 chr3 145138851 145139033 -82385545 + (TGG)n Simple_repeat Simple_repeat 1 180 0 878 166 0 6 chr3 145139057 145139238 -82385340 + (TGG)n Simple_repeat Simple_repeat 1 180 0 665 193 0 17 chr3 145139216 145139397 -82385181 + (ATGGTG)n Simple_repeat Simple_repeat 3 180 0 * 363 229 0 0 chr3 145139413 145139531 -82385047 + (TGG)n Simple_repeat Simple_repeat 1 118 0 272 316 0 0 chr3 145139592 145139609 -82384969 + (ATGGTG)n Simple_repeat Simple_repeat 3 19 -62 2816 138 21 2 chr3 145139609 145140029 -82384549 + MSTA LTR MaLR 1 428 0 272 316 0 0 chr3 145140029 145140090 -82384488 + (ATGGTG)n Simple_repeat Simple_repeat 18 81 0 380 314 94 76 chr3 145140096 145140583 -82383995 + L2 LINE L2 417 912 -2402 1796 237 67 13 chr3 145140772 145141248 -82383330 - MLT1F LTR MaLR -1 541 40 444 337 98 57 chr3 145141250 145141409 -82383169 + L2 LINE L2 1139 1290 -2024 2255 109 0 0 chr3 145141409 145141712 -82382866 - AluSg SINE Alu -7 303 1 444 337 98 57 chr3 145141712 145142042 -82382536 + L2 LINE L2 1290 1648 -1666 277 303 191 11 chr3 145142191 145142379 -82382199 + L1MC4 LINE L1 6781 7002 -1040 184 319 32 32 chr3 145142795 145142889 -82381689 + MIR SINE MIR 52 145 -63 191 274 20 0 chr3 145143382 145143433 -82381145 - MIR SINE MIR -60 148 97 1238 155 9 30 chr3 145143724 145143956 -82380622 - AluJb SINE Alu 0 312 86 576 294 89 11 chr3 145144037 145144217 -82380361 + MIR SINE MIR 20 213 -49 332 233 181 48 chr3 145145469 145145740 -82378838 + LTR33 LTR ERVL 101 407 -114 2549 210 8 9 chr3 145145898 145146387 -82378191 + L1PB1 LINE L1 4697 5186 -960 2251 88 0 10 chr3 145146387 145146692 -82377886 + AluY SINE Alu 1 302 -9 2549 210 8 9 chr3 145146692 145146850 -82377728 + L1PB1 LINE L1 5186 5343 -803 * 3471 86 20 21 chr3 145146848 145147405 -82377173 + L1PB1 LINE L1 5596 6151 0 200 122 24 0 chr3 145147449 145147490 -82377088 + A-rich Low_complexity Low_complexity 2 43 0 243 195 0 0 chr3 145147850 145147891 -82376687 - MIR SINE MIR -110 152 112 1688 207 96 4 chr3 145149008 145149486 -82375092 - MER74A LTR ERVL -30 528 7 678 236 34 0 chr3 145150383 145150561 -82374017 + MER105 DNA DNA 14 197 -7 279 313 0 10 chr3 145150825 145150924 -82373654 - ERVL LTR ERVL -1579 4185 4088 304 324 43 0 chr3 145151208 145151347 -82373231 - ERVL LTR ERVL -2062 3702 3558 577 352 24 7 chr3 145151639 145151929 -82372649 - ERVL LTR ERVL -2600 3164 2870 329 286 68 30 chr3 145152187 145152320 -82372258 + L1ME4a LINE L1 5980 6117 -4 338 279 10 10 chr3 145152786 145152890 -82371688 - MIR SINE MIR -70 192 89 716 296 132 31 chr3 145152946 145153572 -82371006 - L2 LINE L2 0 3272 2582 736 237 55 9 chr3 145153580 145153799 -82370779 - MLT1J LTR MaLR -280 231 3 237 320 8 24 chr3 145153897 145154022 -82370556 + (TGG)n Simple_repeat Simple_repeat 1 123 0 274 316 17 0 chr3 145154072 145154189 -82370389 + (TGG)n Simple_repeat Simple_repeat 1 119 0 * 307 313 6 36 chr3 145154133 145154299 -82370279 + (ATGGTG)n Simple_repeat Simple_repeat 4 164 0 1310 90 0 6 chr3 145154376 145154553 -82370025 - AluSg SINE Alu -134 176 1 212 244 0 0 chr3 145154645 145154686 -82369892 + (ATGGTG)n Simple_repeat Simple_repeat 3 43 0 819 179 0 0 chr3 145154686 145154865 -82369713 + (TGG)n Simple_repeat Simple_repeat 1 179 0 954 164 0 0 chr3 145154883 145155320 -82369258 + (TGG)n Simple_repeat Simple_repeat 1 437 0 252 286 83 52 chr3 145155911 145156028 -82368550 + L1M4 LINE L1 4595 4707 -1439 315 0 0 0 chr3 145156028 145156063 -82368515 + (TG)n Simple_repeat Simple_repeat 1 35 0 216 0 0 0 chr3 145156062 145156086 -82368492 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 252 286 83 52 chr3 145156063 145156293 -82368285 + L1M4 LINE L1 4707 4929 -1217 250 319 132 0 chr3 145157133 145157277 -82367301 + MIR SINE MIR 30 192 -70 309 26 0 0 chr3 145157956 145157994 -82366584 + (CA)n Simple_repeat Simple_repeat 2 39 0 810 282 8 4 chr3 145158254 145158488 -82366090 - MLT1E LTR MaLR -23 570 336 544 295 105 3 chr3 145158834 145159279 -82365299 - L1ME3A LINE L1 -218 5952 5432 194 151 19 75 chr3 145159480 145159533 -82365045 + L2 LINE L2 2915 2964 -308 892 144 164 41 chr3 145159695 145159890 -82364688 - MER20 DNA MER1_type 0 219 1 445 291 34 45 chr3 145160662 145160841 -82363737 + L2 LINE L2 3108 3284 -29 933 150 0 5 chr3 145160867 145161308 -82363270 + (TGGG)n Simple_repeat Simple_repeat 2 617 0 691 243 11 28 chr3 145162058 145162235 -82362343 - MIR SINE MIR -79 183 10 220 310 0 14 chr3 145162302 145162373 -82362205 + (TCCA)n Simple_repeat Simple_repeat 2 71 0 326 316 23 17 chr3 145163597 145163774 -82360804 + (CCA)n Simple_repeat Simple_repeat 2 179 0 195 220 0 0 chr3 145163834 145163884 -82360694 + (CCA)n Simple_repeat Simple_repeat 2 51 0 203 372 0 7 chr3 145164577 145164722 -82359856 + (CCA)n Simple_repeat Simple_repeat 1 144 0 180 179 0 0 chr3 145165167 145165206 -82359372 + (CACCAT)n Simple_repeat Simple_repeat 3 41 0 398 314 12 12 chr3 145165293 145165465 -82359113 + (CACCAT)n Simple_repeat Simple_repeat 6 177 0 312 161 23 11 chr3 145166036 145166123 -82358455 + GA-rich Low_complexity Low_complexity 3 90 0 824 112 22 28 chr3 145166136 145166315 -82358263 + GA-rich Low_complexity Low_complexity 1 178 0 951 225 121 60 chr3 145166551 145166916 -82357662 - MLT1B LTR MaLR -3 387 1 221 239 104 0 chr3 145167008 145167075 -82357503 + MIR SINE MIR 48 121 -87 185 277 100 46 chr3 145169211 145169341 -82355237 + L3 LINE CR1 1316 1452 -125 1955 107 0 43 chr3 145169445 145169745 -82354833 + AluSg SINE Alu 1 287 -23 740 257 58 137 chr3 145169809 145170057 -82354521 - L2 LINE L2 -8 3305 3110 2259 65 26 13 chr3 145170057 145170363 -82354215 + AluY SINE Alu 2 311 0 740 257 58 137 chr3 145170363 145170581 -82353997 - L2 LINE L2 -203 3110 2876 388 272 111 43 chr3 145170592 145170754 -82353824 - MIR SINE MIR -72 190 18 201 176 0 0 chr3 145170755 145170789 -82353789 + (ATG)n Simple_repeat Simple_repeat 3 36 0 339 270 27 18 chr3 145170966 145171077 -82353501 + L2 LINE L2 3201 3312 -1 257 281 16 0 chr3 145172016 145172080 -82352498 - MIR SINE MIR -113 149 85 249 330 115 10 chr3 145172148 145172357 -82352221 + L2 LINE L2 2910 3140 -132 250 298 189 13 chr3 145172645 145172986 -82351592 + L2 LINE L2 2594 3013 -300 372 266 93 8 chr3 145173458 145173646 -82350932 - MIR SINE MIR -37 225 25 904 222 62 0 chr3 145175487 145175730 -82348848 - L1MB3 LINE L1 0 6183 5926 2193 163 82 15 chr3 145175895 145176360 -82348218 - MLT1D LTR MaLR -9 496 1 982 300 225 15 chr3 145178647 145179411 -82345167 - L2 LINE L2 -299 3014 2063 228 255 0 0 chr3 145179719 145179770 -82344808 + (CAT)n Simple_repeat Simple_repeat 2 52 0 * 347 328 11 22 chr3 145179736 145179916 -82344662 + (CCA)n Simple_repeat Simple_repeat 2 179 0 249 381 48 0 chr3 145179946 145180051 -82344527 - L2 LINE L2 -24 3289 3180 1378 319 134 24 chr3 145180186 145181296 -82343282 - L2 LINE L2 -338 2976 1745 313 303 99 0 chr3 145181592 145181754 -82342824 - L1MC5 LINE L1 -728 7233 7056 1020 266 117 35 chr3 145181856 145182392 -82342186 + L2 LINE L2 2739 3313 0 520 204 26 80 chr3 145182394 145182570 -82342008 - MIR SINE MIR -59 149 32 726 272 37 33 chr3 145182571 145182681 -82341897 + Charlie8 DNA MER1_type 4 112 -229 1694 171 19 32 chr3 145182681 145182990 -82341588 + AluJo SINE Alu 1 305 -7 726 272 37 33 chr3 145182990 145183151 -82341427 + Charlie8 DNA MER1_type 112 276 -65 370 332 171 10 chr3 145183200 145183498 -82341080 + L2 LINE L2 2927 3272 0 341 286 47 19 chr3 145183864 145184019 -82340559 + MIR SINE MIR 20 181 -63 414 263 0 42 chr3 145186842 145186960 -82337618 + MIR SINE MIR 88 200 -62 642 240 114 8 chr3 145187008 145187254 -82337324 - MER33 DNA MER1_type -24 300 29 329 295 19 62 chr3 145187705 145187913 -82336665 - MIR SINE MIR -33 229 34 447 364 36 0 chr3 145187922 145188117 -82336461 + MIR SINE MIR 48 249 -13 353 293 86 0 chr3 145188147 145188287 -82336291 + L2 LINE L2 2922 3073 -240 1089 319 89 1 chr3 145188508 145189058 -82335520 + L1ME1 LINE L1 5540 6145 -21 1533 177 4 14 chr3 145189422 145189699 -82334879 + AluJo SINE Alu 1 274 -38 240 35 0 0 chr3 145189704 145189733 -82334845 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 246 206 14 27 chr3 145190020 145190093 -82334485 + (TG)n Simple_repeat Simple_repeat 2 73 0 1822 196 40 0 chr3 145190250 145190602 -82333976 - L1MB7 LINE L1 -1 6183 5818 225 0 0 0 chr3 145190603 145190628 -82333950 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 824 178 7 7 chr3 145190628 145190774 -82333804 - FRAM SINE Alu -30 146 1 441 157 33 18 chr3 145190785 145190893 -82333685 - L1MB7 LINE L1 -369 5815 5722 286 179 0 0 chr3 145190894 145190950 -82333628 - L1MB7 LINE L1 -570 5614 5559 190 138 0 0 chr3 145190954 145190983 -82333595 - L2 LINE L2 -15 3257 3229 508 299 0 6 chr3 145193954 145194131 -82330447 + CT-rich Low_complexity Low_complexity 2 177 0 449 340 120 17 chr3 145194668 145194909 -82329669 - L1MB8 LINE L1 -248 5930 5665 334 349 46 5 chr3 145194925 145195120 -82329458 - L1MB8 LINE L1 -543 5621 5419 225 297 102 16 chr3 145196853 145196981 -82327597 + MIR SINE MIR 123 261 -1 435 252 132 16 chr3 145198022 145198272 -82326306 - L2 LINE L2 -354 2960 2682 481 275 95 38 chr3 145198482 145198744 -82325834 - MLT1K LTR MaLR -52 536 260 194 279 131 16 chr3 145200140 145200262 -82324316 + L2 LINE L2 2124 2259 -1055 322 242 23 55 chr3 145200680 145200808 -82323770 + (ATGGTG)n Simple_repeat Simple_repeat 2 125 0 259 264 101 16 chr3 145202823 145202952 -82321626 + L2 LINE L2 2911 3050 -222 248 152 65 0 chr3 145203285 145203331 -82321247 - MIR SINE MIR -120 142 94 409 289 52 7 chr3 145204739 145204874 -82319704 - MIR SINE MIR -78 184 44 187 287 58 23 chr3 145205030 145205117 -82319461 - MIR SINE MIR -93 115 26 216 0 0 0 chr3 145206030 145206054 -82318524 + (CA)n Simple_repeat Simple_repeat 2 25 0 342 265 229 0 chr3 145207679 145207845 -82316733 + LTR33 LTR ERVL 7 210 -311 226 255 132 69 chr3 145208274 145208478 -82316100 + L2 LINE L2 2835 3051 -221 363 96 0 0 chr3 145208526 145208578 -82316000 + (TA)n Simple_repeat Simple_repeat 2 53 0 1183 166 0 10 chr3 145208602 145208801 -82315777 - AluJb SINE Alu -29 283 87 1675 154 25 31 chr3 145208801 145209158 -82315420 - L1MA7 LINE L1 -47 6244 5890 311 309 43 0 chr3 145209863 145209957 -82314621 - MIR SINE MIR -58 150 53 2273 81 0 0 chr3 145210113 145210398 -82314180 + AluY SINE Alu 14 298 -13 192 301 26 62 chr3 145211409 145211522 -82313056 - L2 LINE L2 -43 3270 3162 216 0 0 0 chr3 145211602 145211626 -82312952 + (GGA)n Simple_repeat Simple_repeat 1 24 0 214 259 53 30 chr3 145212049 145212180 -82312398 + L2 LINE L2 2831 2964 -350 856 319 65 16 chr3 145212195 145212577 -82312001 + L2 LINE L2 2907 3307 -6 476 204 78 4 chr3 145212805 145212938 -82311640 - MIR SINE MIR -57 151 8 229 274 137 16 chr3 145213883 145214007 -82310571 + L2 LINE L2 3023 3161 -111 279 0 0 0 chr3 145216309 145216340 -82308238 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 184 321 37 12 chr3 145218024 145218105 -82306473 - MIR SINE MIR -146 116 34 323 224 24 0 chr3 145218691 145218776 -82305802 - MIR SINE MIR -126 136 50 200 328 101 8 chr3 145218846 145218965 -82305613 + L2 LINE L2 3132 3261 -11 340 274 44 9 chr3 145218970 145219083 -82305495 - MIR SINE MIR -88 174 58 215 132 26 0 chr3 145219226 145219264 -82305314 + (CA)n Simple_repeat Simple_repeat 2 40 0 219 226 19 0 chr3 145221516 145221569 -82303009 + L2 LINE L2 3201 3254 -18 273 295 26 0 chr3 145223085 145223163 -82301415 - MIR SINE MIR -156 106 27 236 337 41 10 chr3 145223590 145223688 -82300890 - L2 LINE L2 -26 3246 3146 393 293 183 21 chr3 145224235 145224607 -82299971 - L2 LINE L2 -3 3310 2879 254 310 103 0 chr3 145225900 145226016 -82298562 + MIR3 SINE MIR 38 165 -43 2349 153 73 2 chr3 145228451 145228849 -82295729 + MSTB LTR MaLR 1 426 0 291 273 23 11 chr3 145228993 145229081 -82295497 - Charlie8 DNA MER1_type -2236 181 93 313 201 175 19 chr3 145229256 145229410 -82295168 + MER113 DNA MER1_type? 38 215 -306 194 296 19 0 chr3 145229759 145229813 -82294765 + MIR SINE MIR 187 241 -21 288 243 35 72 chr3 145229901 145230161 -82294417 + Charlie8 DNA MER1_type 7 1398 -1019 300 352 53 4 chr3 145230462 145230684 -82293894 + MIR SINE MIR 20 248 -14 196 289 144 0 chr3 145231212 145231302 -82293276 + L2 LINE L2 2953 3055 -217 434 325 51 40 chr3 145231379 145231653 -82292925 + MER102b DNA MER1_type 56 332 -9 604 333 92 4 chr3 145231804 145232044 -82292534 + MIR SINE MIR 2 262 0 200 359 157 4 chr3 145232092 145232340 -82292238 - L2 LINE L2 -17 3296 3011 204 299 15 0 chr3 145232925 145232992 -82291586 + (CA)n Simple_repeat Simple_repeat 2 69 0 224 292 115 39 chr3 145233273 145233403 -82291175 - MIR SINE MIR -74 188 49 268 233 0 27 chr3 145236920 145236993 -82287585 - L2 LINE L2 -47 3225 3155 772 308 20 38 chr3 145237440 145237784 -82286794 + L1ME LINE L1 5385 5722 -399 468 324 53 22 chr3 145237881 145238106 -82286472 - MIR SINE MIR -21 241 10 260 287 223 0 chr3 145239187 145239344 -82285234 + MLT1K LTR MaLR 129 320 -268 225 276 71 10 chr3 145239742 145239840 -82284738 - L2 LINE L2 -195 3077 2974 863 261 28 20 chr3 145240478 145240731 -82283847 + MIR SINE MIR 8 262 0 358 292 8 23 chr3 145242204 145242334 -82282244 + MIR SINE MIR 20 147 -115 191 238 16 131 chr3 145242678 145242800 -82281778 + MIR SINE MIR 147 254 -8 796 246 79 0 chr3 145243900 145244103 -82280475 + MER20 DNA MER1_type 1 219 0 217 275 12 12 chr3 145244332 145244412 -82280166 + MIR SINE MIR 183 262 0 342 275 47 0 chr3 145244415 145244564 -82280014 + L2 LINE L2 2895 3050 -222 689 233 112 0 chr3 145245121 145245327 -82279251 + L1MC4 LINE L1 7352 7580 -462 440 284 43 7 chr3 145245393 145245534 -82279044 + L1MC4 LINE L1 7696 7841 -201 253 236 83 0 chr3 145246416 145246488 -82278090 + Charlie8 DNA MER1_type 97 174 -2243 242 191 132 15 chr3 145246663 145246731 -82277847 - MIR SINE MIR -69 193 118 2019 133 0 16 chr3 145246951 145247267 -82277311 - AluSx SINE Alu -1 311 1 219 313 73 0 chr3 145247975 145248071 -82276507 + L2 LINE L2 2993 3095 -177 2278 177 16 0 chr3 145248157 145248541 -82276037 + MLT1B LTR MaLR 1 390 0 252 327 19 19 chr3 145248551 145248655 -82275923 + L2 LINE L2 3201 3304 -9 233 297 68 0 chr3 145248670 145248744 -82275834 + L2 LINE L2 3155 3233 -39 183 42 0 0 chr3 145248863 145248887 -82275691 + (TCC)n Simple_repeat Simple_repeat 2 25 0 188 274 233 0 chr3 145250497 145250570 -82274008 + MIR SINE MIR 56 145 -117 828 153 0 7 chr3 145251264 145251401 -82273177 - AluJo SINE Alu -176 136 1 198 313 31 0 chr3 145253406 145253470 -82271108 + MIR SINE MIR 87 152 -110 817 224 13 0 chr3 145255872 145256028 -82268550 + AluJb SINE Alu 136 293 -19 355 292 191 18 chr3 145256099 145256478 -82268100 + L2 LINE L2 2830 3269 -3 352 308 167 13 chr3 145257434 145257590 -82266988 - MIR SINE MIR -37 225 46 352 287 75 63 chr3 145258327 145258501 -82266077 + L1MC/D LINE L1 5574 5749 -2059 329 327 130 19 chr3 145259514 145259722 -82264856 + L2 LINE L2 3083 3313 0 569 239 17 45 chr3 145259798 145259974 -82264604 - L1MA10 LINE L1 0 6334 6164 285 297 95 84 chr3 145260000 145260296 -82264282 + L2 LINE L2 2957 3255 -17 385 250 10 29 chr3 145261590 145261694 -82262884 - MIR SINE MIR -141 121 20 803 206 4 103 chr3 145262173 145262406 -82262172 + MER6B DNA MER2_type 1 210 0 352 263 184 13 chr3 145262488 145262640 -82261938 + MIR SINE MIR 16 193 -69 298 226 128 29 chr3 145263921 145264023 -82260555 + MIR SINE MIR 30 141 -67 198 354 0 0 chr3 145265519 145265584 -82258994 - MIR SINE MIR -1 261 197 188 268 42 0 chr3 145266267 145266338 -82258240 + L2 LINE L2 2909 2982 -290 788 233 115 43 chr3 145266630 145267047 -82257531 + MER113 DNA MER1_type? 1 447 -74 468 91 0 0 chr3 145267107 145267173 -82257405 + (CA)n Simple_repeat Simple_repeat 2 67 0 433 284 54 31 chr3 145267179 145267401 -82257177 + L2 LINE L2 3080 3306 -7 335 287 66 22 chr3 145267712 145267848 -82256730 - L1MDa LINE L1 -3939 2601 2460 3160 203 112 9 chr3 145268422 145269214 -82255364 + Cheshire DNA MER1_type 2 875 -1545 298 229 271 24 chr3 145269406 145269572 -82255006 + L2 LINE L2 3106 3312 -1 186 333 164 31 chr3 145270202 145270361 -82254217 - MIR SINE MIR -37 225 46 286 224 118 0 chr3 145270840 145270916 -82253662 + MIR SINE MIR 45 129 -79 370 352 34 11 chr3 145273268 145273447 -82251131 + MIR3 SINE MIR 3 185 -23 368 288 33 113 chr3 145274822 145275345 -82249233 - L2 LINE L2 -1 3271 2839 2156 125 53 42 chr3 145275345 145275705 -82248873 + THE1B LTR MaLR 1 364 0 342 272 25 0 chr3 145275744 145275825 -82248753 - L2 LINE L2 -559 2755 2673 427 307 139 30 chr3 145277386 145277653 -82246925 - L1ME LINE L1 -403 5761 5466 393 318 93 49 chr3 145278462 145278912 -82245666 - L2 LINE L2 -3 3310 2841 912 286 158 31 chr3 145279377 145280269 -82244309 + L2 LINE L2 2268 3290 -23 218 285 106 24 chr3 145280789 145280912 -82243666 - MIR SINE MIR -71 191 59 191 326 122 14 chr3 145281161 145281308 -82243270 - MIR SINE MIR -76 186 24 247 297 58 0 chr3 145281814 145281920 -82242658 - MIR SINE MIR -55 207 89 1621 130 4 0 chr3 145282728 145282959 -82241619 + AluSx SINE Alu 63 294 -18 868 141 6 19 chr3 145282959 145283107 -82241471 + MER46A DNA MER2_type 89 236 0 180 206 15 29 chr3 145283214 145283282 -82241296 + (TA)n Simple_repeat Simple_repeat 1 67 0 447 354 106 5 chr3 145283319 145283698 -82240880 - L1MC/D LINE L1 -1987 5821 5405 265 269 34 46 chr3 145283856 145284031 -82240547 + GA-rich Low_complexity Low_complexity 4 176 0 323 314 2 58 chr3 145284038 145284624 -82239954 + G-rich Low_complexity Low_complexity 1 553 0 255 355 98 0 chr3 145284882 145285065 -82239513 + L2 LINE L2 3037 3237 -35 284 305 108 24 chr3 145287191 145287358 -82237220 + MIR SINE MIR 22 202 -60 238 309 130 0 chr3 145287848 145287971 -82236607 - L2 LINE L2 -5 3267 3129 298 269 138 47 chr3 145289412 145289687 -82234891 + L1ME4a LINE L1 5623 5922 -199 247 289 104 20 chr3 145289929 145290065 -82234513 - MIR SINE MIR -27 181 37 254 314 219 0 chr3 145291724 145291829 -82232749 + MIR SINE MIR 61 188 -74 283 266 0 0 chr3 145293144 145293208 -82231370 - MIR SINE MIR -155 107 44 556 276 35 15 chr3 145294394 145294593 -82229985 - MIR SINE MIR -33 229 27 492 306 127 13 chr3 145294814 145295043 -82229535 + MIR SINE MIR 6 260 -2 452 255 29 0 chr3 145295213 145295315 -82229263 - MER58A DNA MER1_type 0 224 120 186 333 208 8 chr3 145295548 145295668 -82228910 - L2 LINE L2 -4 3268 3125 247 253 63 0 chr3 145296446 145296541 -82228037 + MIR SINE MIR 94 194 -68 242 285 52 76 chr3 145297347 145297635 -82226943 - L2 LINE L2 -27 3245 2965 335 359 72 44 chr3 145298807 145299264 -82225314 + L1ME4a LINE L1 5649 6118 -3 304 308 67 43 chr3 145299432 145299640 -82224938 + L1ME4a LINE L1 5798 6010 -111 250 240 13 40 chr3 145299924 145299999 -82224579 + MIR SINE MIR 73 145 -117 629 283 86 16 chr3 145300107 145300351 -82224227 - MIR SINE MIR 0 262 2 841 191 17 69 chr3 145300573 145300773 -82223805 + MER20 DNA MER1_type 1 190 -29 1809 173 0 0 chr3 145300773 145301095 -82223483 + AluSx SINE Alu 1 322 0 841 191 17 69 chr3 145301095 145301124 -82223454 + MER20 DNA MER1_type 190 219 0 345 316 8 8 chr3 145302363 145302480 -82222098 - MIR SINE MIR -124 138 22 369 245 196 25 chr3 145303088 145303251 -82221327 + MIR SINE MIR 44 234 -28 300 255 75 0 chr3 145303255 145303361 -82221217 - MER117 DNA MER1_type -82 115 2 248 134 15 104 chr3 145303368 145303435 -82221143 - L2 LINE L2 -8 3305 3245 191 239 0 0 chr3 145303715 145303761 -82220817 - MIR SINE MIR -133 129 84 21 0 0 0 chr3 145304304 145304325 -82220253 + AT_rich Low_complexity Low_complexity 1 21 0 195 211 26 0 chr3 145305864 145305902 -82218676 + MIR SINE MIR 109 147 -61 337 325 175 0 chr3 145306828 145307034 -82217544 + MIR SINE MIR 7 248 -14 345 286 65 45 chr3 145308515 145308714 -82215864 + MIR SINE MIR 16 218 -44 262 227 30 15 chr3 145308720 145308786 -82215792 - MIR SINE MIR -90 172 106 374 306 89 16 chr3 145308825 145309121 -82215457 + L1MC/D LINE L1 2218 2533 -3613 384 295 100 29 chr3 145309185 145309703 -82214875 + L1MC/D LINE L1 2671 3225 -2921 2362 314 134 45 chr3 145309706 145310418 -82214160 + L1MC/D LINE L1 3274 3921 -2225 2054 162 0 0 chr3 145310418 145310714 -82213864 + AluJb SINE Alu 6 301 -11 2362 314 134 45 chr3 145310714 145311663 -82212915 + L1MC/D LINE L1 3921 5083 -1063 325 242 75 43 chr3 145311833 145312019 -82212559 + L1MC/D LINE L1 5285 5476 -2332 266 179 51 13 chr3 145412033 145412111 -82112467 - MLT1F1 LTR MaLR -451 116 36 513 139 154 11 chr3 145412144 145412276 -82112302 - L1MC3 LINE L1 -766 7019 6887 297 345 168 19 chr3 145412919 145413128 -82111450 - MIR SINE MIR -21 241 2 23 68 0 0 chr3 145415322 145415366 -82109212 + GC_rich Low_complexity Low_complexity 1 44 0 22 56 0 0 chr3 145415372 145415408 -82109170 + GC_rich Low_complexity Low_complexity 1 36 0 1255 75 81 0 chr3 145417187 145417360 -82107218 + U2 snRNA snRNA 1 187 -1 2308 96 3 10 chr3 145417562 145417876 -82106702 - AluSp SINE Alu -1 312 1 1451 221 152 16 chr3 145417903 145418428 -82106150 - L1ME2 LINE L1 -26 6138 5540 321 291 143 16 chr3 145418426 145418615 -82105963 - L1MC4a LINE L1 -1872 5936 5724 * 196 262 0 33 chr3 145418616 145418677 -82105901 - L2 LINE L2 -249 3023 2965 411 262 81 29 chr3 145419287 145419496 -82105082 + MIR SINE MIR 16 236 -26 234 270 22 22 chr3 145421198 145421287 -82103291 + MIR SINE MIR 42 130 -78 917 160 163 28 chr3 145423125 145423407 -82101171 + MER33 DNA MER1_type 5 324 0 351 333 28 0 chr3 145423524 145423665 -82100913 + MER58A DNA MER1_type 16 160 0 1985 142 0 3 chr3 145425713 145426009 -82098569 + AluJb SINE Alu 1 295 -17 2286 71 0 19 chr3 145426395 145426704 -82097874 + AluY SINE Alu 1 303 -8 1574 145 19 55 chr3 145427767 145428078 -82096500 - AluJo SINE Alu -12 300 1 2167 82 7 7 chr3 145428802 145429095 -82095483 + AluSg1 SINE Alu 1 293 -16 189 309 32 43 chr3 145431220 145431314 -82093264 - MIR SINE MIR -150 112 20 2097 113 24 3 chr3 145432949 145433241 -82091337 - AluSg SINE Alu -11 299 2 1588 128 65 46 chr3 145433551 145433857 -82090721 - AluJo SINE Alu 0 312 1 2583 58 0 19 chr3 145433923 145434235 -82090343 + AluY SINE Alu 1 306 -5 410 216 9 36 chr3 145434422 145434533 -82090045 - MIR SINE MIR -94 168 61 2062 102 7 14 chr3 145434563 145434858 -82089720 - AluSx SINE Alu -15 297 5 206 280 0 0 chr3 145434869 145434919 -82089659 - L2 LINE L2 -4 3268 3219 2341 108 10 0 chr3 145435205 145435510 -82089068 + AluSg SINE Alu 1 308 -2 198 306 35 12 chr3 145438629 145438714 -82085864 - MIR SINE MIR -168 94 8 183 42 0 0 chr3 145440019 145440043 -82084535 + (CGCGG)n Simple_repeat Simple_repeat 1 24 0 180 77 0 0 chr3 145440097 145440123 -82084455 + (CCGCG)n Simple_repeat Simple_repeat 4 29 0 231 197 66 0 chr3 145441178 145441239 -82083339 - MER102a DNA MER1_type -4 337 273 2032 122 0 26 chr3 145441716 145442020 -82082558 + AluJb SINE Alu 1 296 -16 24 67 0 0 chr3 145442280 145442325 -82082253 + AT_rich Low_complexity Low_complexity 1 45 0 2163 116 16 3 chr3 145442613 145442916 -82081662 + AluSx SINE Alu 1 307 -5 268 81 0 0 chr3 145443624 145443661 -82080917 - tRNA-Cys-TGC tRNA tRNA -38 37 1 2363 107 0 0 chr3 145443793 145444091 -82080487 - AluSx SINE Alu -13 299 2 677 279 101 27 chr3 145444911 145445130 -82079448 + MER102a DNA MER1_type 96 330 0 249 57 0 0 chr3 145445229 145445264 -82079314 + (TG)n Simple_repeat Simple_repeat 1 35 0 1782 83 167 4 chr3 145445622 145445886 -82078692 + AluSg1 SINE Alu 1 307 -2 432 306 70 21 chr3 145446048 145446234 -82078344 - MLT1J LTR MaLR -236 275 81 274 105 0 33 chr3 145446662 145446715 -82077863 - MLT2C1 LTR ERVL 0 397 363 1109 119 41 101 chr3 145446715 145446934 -82077644 + MER2 DNA MER2_type 1 206 -139 2173 113 14 0 chr3 145446966 145447258 -82077320 - AluSq SINE Alu -17 296 1 302 233 67 0 chr3 145447263 145447323 -82077255 + MER2 DNA MER2_type 280 343 -2 1227 209 106 31 chr3 145447352 145447702 -82076876 - MLT2C1 LTR ERVL -20 377 2 829 283 147 32 chr3 145448041 145448415 -82076163 - MLT1K LTR MaLR -14 574 158 5124 164 121 6 chr3 145448516 145449430 -82075148 + LTR28 LTR ERV1 1 1020 0 2432 97 0 0 chr3 145449559 145449859 -82074719 + AluSg SINE Alu 1 300 -10 293 266 105 8 chr3 145449859 145449983 -82074595 + MIR SINE MIR 110 245 -17 333 201 92 92 chr3 145450214 145450287 -82074291 - MIR SINE MIR -31 231 159 2265 115 0 0 chr3 145450287 145450583 -82073995 - AluSx SINE Alu -16 296 1 333 201 92 92 chr3 145450583 145450673 -82073905 - MIR SINE MIR -102 160 68 4448 167 47 20 chr3 145451712 145452670 -82071908 - L1MB7 LINE L1 -16 6666 5686 1262 68 0 0 chr3 145452674 145452820 -82071758 - AluSg SINE Alu -164 146 1 4830 201 79 40 chr3 145452821 145453803 -82070775 - L1MB7 LINE L1 -944 5700 4758 2021 113 4 4 chr3 145453803 145454077 -82070501 - AluSx SINE Alu 0 312 39 4830 201 79 40 chr3 145454077 145454486 -82070092 - L1MB7 LINE L1 -1886 4758 4366 2570 45 0 22 chr3 145454486 145454800 -82069778 - AluY SINE Alu -4 307 1 4830 201 79 40 chr3 145454800 145455371 -82069207 - L1MB7 LINE L1 -2278 4366 3523 1780 101 4 0 chr3 145455371 145455599 -82068979 - AluSp SINE Alu -84 229 1 5092 209 66 41 chr3 145455600 145456894 -82067684 - L1MB7 LINE L1 -5215 1327 2 1845 121 24 65 chr3 145457137 145457475 -82067103 - MLT1B LTR MaLR -66 324 1 2195 122 3 0 chr3 145457902 145458196 -82066382 + AluSx SINE Alu 1 295 -17 2312 96 30 0 chr3 145458234 145458535 -82066043 + AluSx SINE Alu 1 310 -2 1064 192 73 73 chr3 145459026 145459328 -82065250 - MER102b DNA MER1_type -1 340 39 1361 277 99 23 chr3 145459365 145459972 -82064606 - L2 LINE L2 -1359 1955 1303 433 273 53 0 chr3 145460229 145460379 -82064199 - L2 LINE L2 -2083 1231 1074 2830 116 82 33 chr3 145460740 145461208 -82063370 + L1MA7 LINE L1 4823 5267 -1024 1452 154 131 0 chr3 145461208 145461467 -82063111 + AluJo SINE Alu 1 293 -9 2830 116 82 33 chr3 145461467 145461700 -82062878 + L1MA7 LINE L1 5267 5487 -804 2366 99 3 13 chr3 145461700 145462013 -82062565 + AluSq SINE Alu 1 310 -3 2830 116 82 33 chr3 145462013 145462164 -82062414 + L1MA7 LINE L1 5487 5725 -566 2081 135 0 3 chr3 145462165 145462461 -82062117 + AluSx SINE Alu 1 295 -17 2132 97 72 3 chr3 145462483 145462832 -82061746 + L1MA7 LINE L1 5919 6291 0 869 262 141 38 chr3 145462832 145463252 -82061326 - MLT1J LTR MaLR -43 468 6 237 298 129 0 chr3 145463478 145463602 -82060976 + L2 LINE L2 2925 3064 -208 198 167 0 0 chr3 145463684 145463720 -82060858 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 185 233 23 0 chr3 145464134 145464177 -82060401 - MER5A DNA MER1_type -83 106 63 646 107 91 16 chr3 145464260 145464306 -82060272 - L1MB3 LINE L1 0 6183 6142 2327 99 0 3 chr3 145464306 145464600 -82059978 + AluSx SINE Alu 1 293 -19 646 107 91 16 chr3 145464600 145464674 -82059904 - L1MB3 LINE L1 -41 6142 6054 1290 165 0 19 chr3 145464674 145464886 -82059692 - AluJo SINE Alu -89 223 16 1084 171 13 125 chr3 145464897 145465282 -82059296 - L1M4 LINE L1 -841 5305 4964 2614 259 71 25 chr3 145465301 145466320 -82058258 - HAL1 LINE L1 -1 2506 1442 857 156 0 29 chr3 145466488 145466661 -82057917 - MER53 DNA DNA 0 189 22 2332 100 3 6 chr3 145466662 145466973 -82057605 - AluSg SINE Alu 0 310 1 392 146 45 45 chr3 145467118 145467207 -82057371 + HAL1 LINE L1 1570 1658 -849 617 240 80 11 chr3 145467512 145467687 -82056891 - L1ME3A LINE L1 -22 6148 5962 908 202 26 16 chr3 145467689 145467882 -82056696 - MER58A DNA MER1_type -11 213 19 4744 217 23 11 chr3 145467913 145468838 -82055740 + L1M4b LINE L1 363 1298 -5561 614 184 55 0 chr3 145468848 145468957 -82055621 + FLAM_C SINE Alu 4 118 -25 1730 140 49 38 chr3 145468959 145469147 -82055431 + L1M4b LINE L1 1285 1480 -5379 2072 116 7 0 chr3 145469147 145469439 -82055139 - AluSc SINE Alu -11 298 5 1730 140 49 38 chr3 145469439 145469615 -82054963 + L1M4b LINE L1 1480 1653 -5206 831 150 0 0 chr3 145469893 145470020 -82054558 - FLAM_C SINE Alu -4 129 3 225 0 0 0 chr3 145470499 145470524 -82054054 + (CAGGG)n Simple_repeat Simple_repeat 5 29 0 977 73 58 0 chr3 145470714 145470851 -82053727 - MER57B LTR ERV1 0 434 290 332 89 0 71 chr3 145470836 145470892 -82053686 - MER57B LTR ERV1 -382 52 1 * 1546 91 121 4 chr3 145470894 145471125 -82053453 - MER57B-int LTR ERV1 -1 7536 7279 505 195 23 31 chr3 145471125 145471253 -82053325 - LTR54B LTR ERV1 -367 131 5 24821 105 31 34 chr3 145471255 145471767 -82052811 - MER57-int LTR ERV1 -389 7148 6636 2231 91 0 17 chr3 145471767 145472065 -82052513 - AluSg SINE Alu -17 293 1 24821 105 31 34 chr3 145472065 145472925 -82051653 - MER57-int LTR ERV1 -901 6636 5775 2262 109 0 0 chr3 145472925 145473242 -82051336 + AluSx SINE Alu 1 317 0 24821 105 31 34 chr3 145473242 145473976 -82050602 - MER57-int LTR ERV1 -1762 5775 5041 2351 112 0 0 chr3 145473976 145474281 -82050297 - AluSx SINE Alu -7 305 1 24821 105 31 34 chr3 145474281 145475037 -82049541 - MER57-int LTR ERV1 -2496 5041 4285 2425 99 3 0 chr3 145475037 145475349 -82049229 + AluSp SINE Alu 1 313 0 24821 105 31 34 chr3 145475349 145475842 -82048736 - MER57-int LTR ERV1 -3252 4285 3792 2051 149 3 13 chr3 145475842 145476151 -82048427 - AluSx SINE Alu -6 306 1 24821 105 31 34 chr3 145476151 145476532 -82048046 - MER57-int LTR ERV1 -3745 3792 3414 2193 113 0 3 chr3 145476532 145476824 -82047754 - AluSg SINE Alu -19 291 1 24821 105 31 34 chr3 145476824 145476991 -82047587 - MER57-int LTR ERV1 -4123 3414 3248 918 110 29 0 chr3 145476979 145477115 -82047463 - MER57-int LTR ERV1 -4617 2920 2781 * 542 222 17 0 chr3 145477111 145477228 -82047350 - MER57-int LTR ERV1 -4908 2629 2511 * 3904 143 44 9 chr3 145477230 145478002 -82046576 - MER57-int LTR ERV1 -4215 3601 648 1160 64 0 0 chr3 145477994 145478134 -82046444 - MER57-int LTR ERV1 -6570 967 828 * 303 139 0 0 chr3 145478148 145478191 -82046387 - MER57-int LTR ERV1 -6995 542 500 2274 106 7 0 chr3 145478191 145478483 -82046095 + AluSx SINE Alu 1 294 -18 5165 144 17 37 chr3 145478488 145478756 -82045822 - Tigger3b DNA MER2_type -2082 946 674 2461 89 0 0 chr3 145478756 145479059 -82045519 - AluSg SINE Alu -7 303 1 5165 144 17 37 chr3 145479059 145479491 -82045087 - Tigger3b DNA MER2_type -2354 674 235 3933 123 2 0 chr3 145479491 145480044 -82044534 - MER41A LTR ERV1 0 554 1 5165 144 17 37 chr3 145480044 145480229 -82044349 - Tigger3b DNA MER2_type -2793 235 77 2439 82 0 0 chr3 145480229 145480523 -82044055 - AluSx SINE Alu -18 294 1 5165 144 17 37 chr3 145480523 145480595 -82043983 - Tigger3b DNA MER2_type -2951 77 5 567 201 201 6 chr3 145480774 145480948 -82043630 - MER67C LTR ERV1 -5 705 498 310 217 181 2 chr3 145481141 145481282 -82043296 + LTR8A LTR ERV1 419 675 -52 402 242 67 40 chr3 145481295 145481444 -82043134 - MER67C LTR ERV1 -551 159 7 229 264 18 0 chr3 145481448 145481558 -82043020 + (CA)n Simple_repeat Simple_repeat 2 113 0 604 231 75 0 chr3 145481560 145481720 -82042858 + Ricksha DNA DNA 3 174 -1080 * 690 180 6 25 chr3 145481614 145481775 -82042803 - Ricksha DNA DNA -13 3233 3076 1571 191 154 0 chr3 145481776 145482144 -82042434 - Ricksha DNA DNA -2736 510 9 201 313 21 10 chr3 145482152 145482248 -82042330 + (CA)n Simple_repeat Simple_repeat 2 98 0 256 311 85 9 chr3 145482389 145482495 -82042083 - MIR SINE MIR -52 210 97 1775 129 3 34 chr3 145482590 145482885 -82041693 + AluSx SINE Alu 16 301 -11 188 290 108 11 chr3 145482945 145483038 -82041540 + MIR SINE MIR 20 121 -87 428 250 135 14 chr3 145483255 145483403 -82041175 - HAL1 LINE L1 -301 2206 2041 196 304 0 29 chr3 145483432 145483501 -82041077 + L2 LINE L2 3193 3259 -13 328 193 174 46 chr3 145483589 145483698 -82040880 - MIR SINE MIR -79 183 61 1261 151 0 0 chr3 145483713 145483905 -82040673 - AluJb SINE Alu -120 192 1 353 268 8 76 chr3 145484023 145484121 -82040457 + L1P2 LINE L1 5390 5481 -673 2182 63 3 57 chr3 145484121 145484438 -82040140 + AluY SINE Alu 1 300 -11 353 268 8 76 chr3 145484438 145484471 -82040107 + L1P2 LINE L1 5481 5515 -639 903 158 5 188 chr3 145484699 145485046 -82039532 + Charlie5 DNA MER1_type 41 2624 0 2012 111 4 0 chr3 145486747 145487075 -82037503 + AluSx SINE Alu 1 329 0 547 272 106 0 chr3 145487178 145487358 -82037220 + MIR SINE MIR 4 202 -60 351 242 143 0 chr3 145487908 145487999 -82036579 - MIR SINE MIR -69 193 90 321 235 82 20 chr3 145488168 145488266 -82036312 - L1MC5 LINE L1 -50 7911 7808 719 258 44 14 chr3 145488283 145488558 -82036020 - L1MEc LINE L1 -1608 4607 4325 * 2118 243 94 55 chr3 145488546 145488579 -82035999 - L1MEc LINE L1 -3090 3125 3095 2074 117 0 0 chr3 145488579 145488877 -82035701 - AluSx SINE Alu -14 298 1 2118 243 94 55 chr3 145488877 145489754 -82034824 - L1MEc LINE L1 -3120 3095 2179 2295 73 0 0 chr3 145489761 145490047 -82034531 - AluSg SINE Alu -24 286 1 764 304 72 7 chr3 145490051 145490396 -82034182 - L1MEc LINE L1 -4501 1895 1371 284 308 90 24 chr3 145490598 145490809 -82033769 - LTR16A LTR ERVL -162 288 64 1336 247 96 62 chr3 145490897 145491290 -82033288 - L1MEc LINE L1 -5054 1342 964 2227 84 0 7 chr3 145491290 145491586 -82032992 - AluY SINE Alu -17 294 1 1642 166 0 47 chr3 145491594 145491758 -82032820 - AluJo SINE Alu -25 287 142 2111 105 3 0 chr3 145491758 145492044 -82032534 - AluSc SINE Alu -22 287 1 1642 166 0 47 chr3 145492044 145492180 -82032398 - AluJo SINE Alu -170 142 1 1336 247 96 62 chr3 145492180 145492425 -82032153 - L1MEc LINE L1 -5438 958 673 305 366 83 23 chr3 145492456 145492672 -82031906 - L1MEc LINE L1 -5835 561 333 543 307 13 22 chr3 145492694 145492925 -82031653 - L1MEc LINE L1 -6137 259 31 314 168 96 32 chr3 145492968 145493093 -82031485 - L1M4 LINE L1 -2173 3973 3841 2026 141 0 0 chr3 145493141 145493446 -82031132 - AluSx SINE Alu -7 305 1 256 328 0 0 chr3 145494003 145494067 -82030511 + MIR SINE MIR 90 153 -109 3622 147 56 12 chr3 145494702 145495368 -82029210 - L1MB3 LINE L1 -3 6180 5486 309 297 160 30 chr3 145495529 145495923 -82028655 - L1MC4a LINE L1 -1866 5942 5498 469 276 118 10 chr3 145496753 145496877 -82027701 - HAL1 LINE L1 -6 2501 2392 261 0 0 0 chr3 145496877 145496906 -82027672 + (TTG)n Simple_repeat Simple_repeat 2 30 0 469 276 118 10 chr3 145496906 145496984 -82027594 - HAL1 LINE L1 -115 2392 2277 605 207 178 72 chr3 145497019 145497145 -82027433 - HAL1 LINE L1 -304 2203 2092 1880 153 0 0 chr3 145497145 145497439 -82027139 - AluJb SINE Alu -18 294 1 605 207 178 72 chr3 145497439 145497800 -82026778 - HAL1 LINE L1 -415 2092 1664 991 217 43 11 chr3 145497800 145498066 -82026512 + MLT1G LTR MaLR 1 269 -286 972 209 202 36 chr3 145498284 145498586 -82025992 + MLT1H1 LTR MaLR 204 555 0 458 243 124 106 chr3 145498586 145498744 -82025834 - HAL1 LINE L1 -841 1666 1512 1504 148 3 34 chr3 145498744 145499035 -82025543 - AluJo SINE Alu 0 312 31 458 243 124 106 chr3 145499035 145499107 -82025471 - HAL1 LINE L1 -995 1512 1443 1634 166 11 3 chr3 145499107 145499391 -82025187 - AluJo SINE Alu -22 290 5 458 243 124 106 chr3 145499391 145499822 -82024756 - HAL1 LINE L1 -1064 1443 992 840 253 79 0 chr3 145499936 145500165 -82024413 - MIR SINE MIR -8 254 8 550 94 21 42 chr3 145500286 145500382 -82024196 - L1MD1 LINE L1 -5 6237 6144 1231 266 107 7 chr3 145501187 145501646 -82022932 + MLT1D LTR MaLR 1 505 0 358 275 47 20 chr3 145502608 145502757 -82021821 + L1MC4a LINE L1 5730 5882 -1926 226 158 18 18 chr3 145502767 145502824 -82021754 + LTR66 LTR ERVL 384 440 -170 406 241 35 0 chr3 145502961 145503048 -82021530 - MER58A DNA MER1_type 0 119 30 603 280 132 32 chr3 145503319 145503697 -82020881 - MLT1L LTR MaLR -43 572 157 2072 115 7 3 chr3 145504298 145504594 -82019984 - AluSq SINE Alu -16 297 1 2328 71 0 16 chr3 145505650 145505958 -82018620 + AluSc SINE Alu 1 303 -6 635 216 83 28 chr3 145506085 145506266 -82018312 - MIR SINE MIR -24 238 48 1618 180 52 81 chr3 145508435 145508675 -82015903 - MSTB1 LTR MaLR 0 432 209 2257 77 3 0 chr3 145508675 145508962 -82015616 - AluSg SINE Alu -20 290 3 1618 180 52 81 chr3 145508962 145509166 -82015412 - MSTB1 LTR MaLR -223 209 1 1103 223 111 39 chr3 145509864 145510250 -82014328 - MER74B LTR ERVL -162 460 47 750 263 21 5 chr3 145510237 145510423 -82014155 - LTR33 LTR ERVL -329 192 4 * 286 287 21 29 chr3 145510492 145510597 -82013981 - L1M4 LINE L1 -3413 2733 2627 1133 113 0 0 chr3 145510617 145510777 -82013801 - AluSc SINE Alu -149 160 1 539 298 19 0 chr3 145511043 145511201 -82013377 - MIR SINE MIR -49 213 53 393 229 92 48 chr3 145511249 145511541 -82013037 + L1MC5 LINE L1 7631 7935 -26 347 155 113 31 chr3 145511567 145511664 -82012914 - L1M4 LINE L1 -1541 4605 4501 2241 113 0 0 chr3 145511807 145512118 -82012460 + AluSx SINE Alu 1 311 -1 522 332 72 50 chr3 145512232 145512717 -82011861 - L1ME LINE L1 -3045 3495 3000 994 160 21 21 chr3 145512723 145512917 -82011661 + MER3 DNA MER1_type 1 194 -15 770 241 30 106 chr3 145513083 145513540 -82011038 - L1ME LINE L1 -5319 1211 782 351 338 49 46 chr3 145513837 145514142 -82010436 - L1ME LINE L1 -6194 346 41 6014 91 46 0 chr3 145514258 145515577 -82009001 + L1PA15 LINE L1 4802 6161 -4 288 319 8 8 chr3 145515624 145515743 -82008835 + L1MC4 LINE L1 5774 5892 -1916 * 1464 254 65 59 chr3 145515739 145516513 -82008065 + L1MC4 LINE L1 7265 8042 0 1110 218 25 39 chr3 145517150 145517435 -82007143 + LTR16C LTR ERVL 207 487 -4 1946 71 56 4 chr3 145517443 145517731 -82006847 - AluY SINE Alu 0 302 1 1651 271 112 66 chr3 145518648 145519818 -82004760 - L1MC4 LINE L1 0 8042 6819 279 324 57 9 chr3 145519889 145519994 -82004584 + L2 LINE L2 3158 3267 -5 510 274 0 0 chr3 145520014 145520120 -82004458 - MER5B DNA MER1_type -4 174 69 675 286 124 0 chr3 145520122 145520332 -82004246 + MIR SINE MIR 1 236 -26 5994 197 82 19 chr3 145521468 145523641 -82000937 - L1MB7 LINE L1 -7 6177 3827 1336 81 0 0 chr3 145523641 145523813 -82000765 - L1PA11 LINE L1 0 6174 6003 5994 197 82 19 chr3 145523813 145524087 -82000491 - L1MB7 LINE L1 -2357 3827 3572 1714 215 72 32 chr3 145524176 145524618 -81999960 - LTR40b LTR ERVL 0 462 3 697 299 106 22 chr3 145524702 145525116 -81999462 - HAL1 LINE L1 -6 2501 2053 2344 242 135 10 chr3 145525162 145526126 -81998452 - HAL1 LINE L1 -593 1914 806 611 238 98 12 chr3 145526176 145526340 -81998238 - HAL1 LINE L1 -1825 682 505 645 258 224 24 chr3 145526393 145526723 -81997855 - HAL1 LINE L1 -2108 399 4 2279 79 3 31 chr3 145527768 145528085 -81996493 - AluSg SINE Alu -2 308 1 245 211 39 0 chr3 145528667 145528719 -81995859 - L2 LINE L2 -1 3312 3259 690 122 0 0 chr3 145528739 145528829 -81995749 - 5S rRNA rRNA -31 90 1 252 347 0 20 chr3 145529574 145529672 -81994906 + 7SK RNA RNA 3 98 -95 282 222 0 0 chr3 145529809 145529863 -81994715 - L2 LINE L2 -5 3308 3255 238 246 18 0 chr3 145530639 145530696 -81993882 + L2 LINE L2 3178 3235 -37 22 0 0 0 chr3 145532064 145532086 -81992492 + AT_rich Low_complexity Low_complexity 1 22 0 334 283 94 50 chr3 145532515 145532695 -81991883 + MIR SINE MIR 20 207 -55 491 317 69 59 chr3 145534294 145534685 -81989893 + L2 LINE L2 2831 3225 -47 25 31 0 0 chr3 145535159 145535191 -81989387 + AT_rich Low_complexity Low_complexity 1 32 0 223 240 40 80 chr3 145536605 145536680 -81987898 + L2 LINE L2 3186 3257 -15 308 381 6 25 chr3 145536738 145536898 -81987680 + MER5A DNA MER1_type 3 159 -30 265 236 11 79 chr3 145537344 145537433 -81987145 - L2 LINE L2 -4 3268 3186 627 304 20 29 chr3 145539269 145539473 -81985105 - MIR SINE MIR -4 258 57 2187 99 20 0 chr3 145541394 145541687 -81982891 - AluSq SINE Alu -14 299 1 232 372 43 24 chr3 145542948 145543112 -81981466 + L2 LINE L2 2692 2858 -456 235 204 23 0 chr3 145543455 145543499 -81981079 - L2 LINE L2 -15 3298 3254 243 257 37 83 chr3 145544242 145544351 -81980227 + MIR SINE MIR 38 141 -121 1288 280 59 24 chr3 145545264 145546457 -81978121 + L1M4c LINE L1 804 2252 -4311 2253 130 0 0 chr3 145546458 145546758 -81977820 + AluSx SINE Alu 1 300 -12 662 175 80 24 chr3 145546760 145546953 -81977625 + L1M2 LINE L1 5264 5474 -732 2705 48 0 0 chr3 145546953 145547264 -81977314 + AluY SINE Alu 1 311 0 662 175 80 24 chr3 145547264 145547277 -81977301 + L1M2 LINE L1 5474 5485 -721 1153 149 5 86 chr3 145547318 145547588 -81976990 + AluJb SINE Alu 82 333 0 6374 158 30 27 chr3 145547588 145549272 -81975306 + L1MA9 LINE L1 3971 5681 -631 2648 141 30 0 chr3 145549273 145549712 -81974866 + MSTB2 LTR MaLR 1 452 -5 309 169 0 0 chr3 145549716 145549799 -81974779 + (TA)n Simple_repeat Simple_repeat 1 83 0 942 161 123 7 chr3 145549799 145550263 -81974315 + L1MA9 LINE L1 5663 6279 -33 5777 251 59 20 chr3 145550273 145550537 -81974041 - L1MEc LINE L1 -1835 4705 4453 2162 107 3 44 chr3 145550537 145550854 -81973724 + AluSx SINE Alu 1 304 -8 5777 251 59 20 chr3 145550854 145552968 -81971610 - L1MEc LINE L1 -2087 4453 2264 260 286 122 14 chr3 145553396 145553650 -81970928 - L1ME LINE L1 -5937 593 21 317 241 212 24 chr3 145553651 145553863 -81970715 - L1MEd LINE L1 -3763 2366 2115 29 47 0 0 chr3 145554197 145554240 -81970338 + AT_rich Low_complexity Low_complexity 1 43 0 780 301 59 61 chr3 145554287 145555223 -81969355 - L1MEd LINE L1 -4579 1731 761 369 0 0 0 chr3 145555223 145555264 -81969314 + (TTG)n Simple_repeat Simple_repeat 2 42 0 780 301 59 61 chr3 145555264 145555697 -81968881 - L1MEd LINE L1 -5549 761 328 387 219 42 0 chr3 145555816 145555912 -81968666 - L1MB8 LINE L1 -13 6165 6066 1124 272 62 12 chr3 145555930 145556049 -81968529 - L1M4c LINE L1 -3513 3131 3019 2079 151 3 0 chr3 145556049 145556353 -81968225 - AluSx SINE Alu -7 305 1 1124 272 62 12 chr3 145556353 145556821 -81967757 - L1M4c LINE L1 -3625 3019 2521 772 169 0 22 chr3 145556821 145556957 -81967621 - FLAM_A SINE Alu 0 133 1 1124 272 62 12 chr3 145556957 145557194 -81967384 - L1M4c LINE L1 -4123 2521 2297 423 191 0 22 chr3 145557269 145557358 -81967220 + Tigger5 DNA MER2_type 2237 2323 0 1429 265 70 44 chr3 145557368 145558551 -81966027 - L1M4c LINE L1 -4461 2183 927 212 332 129 21 chr3 145559634 145559827 -81964751 - MIR SINE MIR -47 215 2 276 234 126 27 chr3 145564000 145564111 -81960467 - MIR SINE MIR -66 142 21 221 140 37 28 chr3 145568025 145568132 -81956446 + (TA)n Simple_repeat Simple_repeat 1 108 0 194 158 211 18 chr3 145570551 145570608 -81953970 - L2 LINE L2 -561 2753 2686 224 200 0 0 chr3 145570990 145571028 -81953550 + MIR SINE MIR 114 150 -112 334 316 116 42 chr3 145571112 145571302 -81953276 + MIR SINE MIR 1 204 -58 22 35 0 0 chr3 145571357 145571386 -81953192 + AT_rich Low_complexity Low_complexity 1 29 0 455 269 55 33 chr3 145571926 145572108 -81952470 + L1ME3A LINE L1 5698 5883 -287 368 214 12 0 chr3 145572212 145572296 -81952282 + L1MC4 LINE L1 7943 8027 -15 1848 79 4 0 chr3 145572944 145573172 -81951406 + AluSg SINE Alu 36 264 -46 196 372 106 53 chr3 145573578 145573695 -81950883 + L2 LINE L2 2812 2921 -351 2559 55 0 0 chr3 145573695 145574006 -81950572 - AluY SINE Alu 0 311 1 196 372 106 53 chr3 145574006 145574264 -81950314 + L2 LINE L2 2921 3207 -65 255 122 0 0 chr3 145574281 145574322 -81950256 - AluJo SINE Alu -11 291 251 951 200 22 11 chr3 145574324 145574509 -81950069 - AluJo SINE Alu -125 187 1 3592 173 119 28 chr3 145574687 145575477 -81949101 + MER21B LTR ERV1 1 862 -1 195 114 0 0 chr3 145575714 145575749 -81948829 + (T)n Simple_repeat Simple_repeat 1 35 0 288 263 0 34 chr3 145575783 145575901 -81948677 + Charlie8 DNA MER1_type 128 241 -2176 330 316 38 30 chr3 145576428 145576561 -81948017 - L2 LINE L2 0 3272 3139 405 131 24 12 chr3 145577421 145577505 -81947073 - MER53 DNA DNA 0 189 105 396 131 24 12 chr3 145577433 145577517 -81947061 + MER53 DNA DNA 23 107 -82 * 919 186 11 52 chr3 145577783 145578011 -81946567 - MLT1D LTR MaLR -56 449 247 466 189 76 76 chr3 145578019 145578151 -81946427 - LTR12 LTR ERV1 -234 480 349 231 275 0 0 chr3 145578151 145578220 -81946358 - LTR30 LTR ERV1 -108 614 546 1358 65 3 224 chr3 145578224 145578576 -81946002 - LTR12 LTR ERV1 -440 274 1 1450 153 39 4 chr3 145578617 145578898 -81945680 - L1MB4 LINE L1 0 6180 5890 2044 117 0 0 chr3 145578911 145579193 -81945385 - AluSx SINE Alu -30 282 1 280 115 448 0 chr3 145579193 145579280 -81945298 - L1MB4 LINE L1 -275 5908 5783 1673 154 4 15 chr3 145579405 145579671 -81944907 - AluJo SINE Alu -6 306 44 252 111 0 0 chr3 145580178 145580223 -81944355 + (TC)n Simple_repeat Simple_repeat 2 46 0 626 207 24 59 chr3 145581771 145581940 -81942638 + L2 LINE L2 3150 3312 -1 197 326 47 0 chr3 145582346 145582432 -81942146 - L2 LINE L2 -2857 457 368 315 0 0 0 chr3 145582646 145582681 -81941897 + (TG)n Simple_repeat Simple_repeat 2 36 0 651 244 77 80 chr3 145583743 145584170 -81940408 - MLT1J LTR MaLR 0 511 86 607 212 0 33 chr3 145584368 145584519 -81940059 + L2 LINE L2 3168 3313 0 220 189 83 83 chr3 145584697 145584829 -81939749 + L2 LINE L2 3140 3271 -1 226 154 0 0 chr3 145585181 145585220 -81939358 - L2 LINE L2 -6 3307 3269 6733 55 3 35 chr3 145585282 145586629 -81937949 - L1PA7 LINE L1 -5 6149 4790 191 252 122 52 chr3 145587596 145587711 -81936867 + MIR3 SINE MIR 10 132 -76 * 762 251 75 19 chr3 145587703 145587970 -81936608 - L2 LINE L2 -5 3308 3027 227 132 26 0 chr3 145588132 145588170 -81936408 + MLT1J1 LTR MaLR 275 313 -133 733 273 14 19 chr3 145588699 145588908 -81935670 - MLT1J2 LTR MaLR -242 208 1 194 256 0 0 chr3 145590033 145590072 -81934506 - L3 LINE CR1 -952 625 587 1625 180 187 10 chr3 145590072 145590467 -81934111 + MLT1C LTR MaLR 1 465 -2 564 182 58 25 chr3 145590599 145590720 -81933858 + FLAM_A SINE Alu 1 125 -8 191 395 0 0 chr3 145590892 145590973 -81933605 - L3 LINE CR1 -1280 297 217 1366 205 39 143 chr3 145591107 145591127 -81933451 - L1MC4 LINE L1 -1 8041 8021 2374 94 10 3 chr3 145591127 145591434 -81933144 + AluSp SINE Alu 1 309 -4 1366 205 39 143 chr3 145591434 145591664 -81932914 - L1MC4 LINE L1 -21 8021 7769 1848 146 7 4 chr3 145591664 145591945 -81932633 + AluJo SINE Alu 1 282 -30 1366 205 39 143 chr3 145591945 145592336 -81932242 - L1MC4 LINE L1 -273 7769 7466 389 308 39 50 chr3 145592570 145592752 -81931826 + MIR SINE MIR 12 191 -71 882 259 102 42 chr3 145592874 145593284 -81931294 + LTR16A LTR ERVL 16 450 0 317 188 62 0 chr3 145593349 145593429 -81931149 - HAL1b LINE L1 -4 1344 1260 773 238 126 5 chr3 145593530 145593753 -81930825 + MLT1J LTR MaLR 1 250 -261 273 200 15 0 chr3 145593920 145593985 -81930593 - L2 LINE L2 -976 2338 2273 263 119 71 0 chr3 145594180 145594222 -81930356 - L1ME4a LINE L1 -100 6021 5977 2395 100 0 0 chr3 145594288 145594589 -81929989 + AluSx SINE Alu 1 301 -11 22 35 0 0 chr3 145595034 145595063 -81929515 + AT_rich Low_complexity Low_complexity 1 29 0 1828 137 10 34 chr3 145595063 145595356 -81929222 - AluJb SINE Alu -26 286 1 376 220 82 64 chr3 145595378 145595650 -81928928 - L1ME4a LINE L1 -747 5399 5180 1832 132 194 31 chr3 145595718 145596105 -81928473 + MSTB2 LTR MaLR 1 450 -7 495 322 66 44 chr3 145596130 145596679 -81927899 - L1ME4a LINE L1 -1098 5048 4488 349 67 0 0 chr3 145597006 145597051 -81927527 - LTR10A LTR ERV1 0 609 565 12688 205 9 5 chr3 145597051 145597315 -81927263 - HERVI LTR ERV1 -3718 4067 3805 2724 36 0 0 chr3 145597315 145597618 -81926960 + AluY SINE Alu 1 303 -8 12688 205 9 5 chr3 145597618 145599655 -81924923 - HERVI LTR ERV1 -3980 3805 1758 410 129 118 0 chr3 145649677 145649762 -81874816 - L1M LINE L1 -948 5411 5317 2078 124 3 7 chr3 145649777 145650075 -81874503 - AluSx SINE Alu -11 301 5 530 158 0 0 chr3 145650097 145650192 -81874386 - AluJ/FRAM SINE Alu -1 311 217 3177 223 39 40 chr3 145650192 145650843 -81873735 - L1M4 LINE L1 -817 5329 4678 713 215 0 15 chr3 145650843 145650978 -81873600 - FLAM_C SINE Alu 0 133 1 3177 223 39 40 chr3 145650978 145651386 -81873192 - L1M4 LINE L1 -1468 4678 4271 823 156 71 5 chr3 145651506 145651718 -81872860 - L1MDa LINE L1 -3890 2650 2425 183 42 0 0 chr3 145651731 145651755 -81872823 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 2259 72 7 7 chr3 145651755 145652036 -81872542 - AluSg SINE Alu -26 284 1 208 242 97 16 chr3 145652046 145652108 -81872470 - MIR SINE MIR -79 183 117 183 100 0 0 chr3 145652189 145652219 -81872359 + (TCTCTG)n Simple_repeat Simple_repeat 2 31 0 319 245 71 10 chr3 145653241 145653339 -81871239 - MER5B DNA MER1_type -67 111 8 1296 151 36 4 chr3 145654719 145654970 -81869608 - MER33 DNA MER1_type -63 261 3 1987 157 0 3 chr3 145655034 145655334 -81869244 + AluSg SINE Alu 1 299 -11 240 111 0 0 chr3 145655334 145655370 -81869208 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 2170 102 14 0 chr3 145655381 145655676 -81868902 - AluSp SINE Alu -14 299 1 363 295 130 25 chr3 145656830 145657030 -81867548 + MIR SINE MIR 29 249 -13 391 322 30 27 chr3 145657360 145657740 -81866838 - MER74A LTR ERVL -3 619 182 184 214 0 54 chr3 145658782 145658838 -81865740 - L3b LINE CR1 -4 1579 1527 646 231 15 0 chr3 145659414 145659544 -81865034 + FLAM_A SINE Alu 1 132 -1 2178 104 0 7 chr3 145659658 145659955 -81864623 + AluSx SINE Alu 1 295 -17 452 277 131 0 chr3 145662120 145662257 -81862321 - MER91A DNA MER1_type 0 196 42 440 198 0 9 chr3 145663850 145663956 -81860622 + GA-rich Low_complexity Low_complexity 2 106 0 271 286 14 0 chr3 145664213 145664283 -81860295 - MIR SINE MIR -56 152 82 325 349 40 0 chr3 145665014 145665166 -81859412 + MIR SINE MIR 20 177 -85 798 229 59 102 chr3 145665955 145666327 -81858251 - MLT1H LTR MaLR -71 478 123 261 290 32 97 chr3 145666579 145666703 -81857875 + L2 LINE L2 3155 3270 -2 1062 216 0 0 chr3 145667601 145667795 -81856783 - MLT1B LTR MaLR -5 385 192 1822 189 0 0 chr3 145668271 145668578 -81856000 - AluJo SINE Alu -5 307 1 402 288 117 65 chr3 145668578 145668929 -81855649 + MLT1L LTR MaLR 139 507 -108 817 321 62 27 chr3 145669231 145669680 -81854898 + MLT1K LTR MaLR 2 466 -122 2583 72 3 0 chr3 145669864 145670171 -81854407 + AluY SINE Alu 3 310 -1 2236 233 46 1 chr3 145670367 145671036 -81853542 + L1M4 LINE L1 3063 3761 -2385 1233 64 0 0 chr3 145671036 145671177 -81853401 - AluSq/x SINE Alu -172 141 1 585 229 0 0 chr3 145671179 145671336 -81853242 + (TCCA)n Simple_repeat Simple_repeat 1 157 0 818 174 0 6 chr3 145671350 145671528 -81853050 + (TCCA)n Simple_repeat Simple_repeat 1 177 0 479 318 104 9 chr3 145671558 145671778 -81852800 - L2 LINE L2 -6 3266 3026 254 100 60 60 chr3 145672169 145672219 -81852359 - MIR SINE MIR -173 89 40 422 269 37 22 chr3 145672318 145672452 -81852126 - MIR SINE MIR -76 186 51 248 267 11 67 chr3 145673345 145673435 -81851143 - MIR3 SINE MIR -12 196 112 617 323 91 21 chr3 145673751 145674234 -81850344 + MER113 DNA MER1_type? 1 517 -4 26 0 0 0 chr3 145674744 145674770 -81849808 + AT_rich Low_complexity Low_complexity 1 26 0 2235 120 0 0 chr3 145675548 145675840 -81848738 + AluSx SINE Alu 2 293 -19 450 237 86 36 chr3 145676724 145676863 -81847715 + L2 LINE L2 3162 3307 -6 277 137 74 11 chr3 145676995 145677090 -81847488 + (TA)n Simple_repeat Simple_repeat 1 101 0 2362 101 3 0 chr3 145677185 145677492 -81847086 - AluSq SINE Alu -5 308 1 2419 93 0 0 chr3 145677506 145677807 -81846771 - AluSq SINE Alu -12 301 1 484 242 150 33 chr3 145678285 145678438 -81846140 - MIR SINE MIR -55 207 37 1225 258 67 33 chr3 145678472 145678952 -81845626 - MLT1J LTR MaLR 0 478 9 285 314 88 25 chr3 145679440 145679620 -81844958 + MIR3 SINE MIR 6 197 -65 1880 120 10 14 chr3 145680916 145681208 -81843370 + AluJb SINE Alu 1 291 -21 423 299 22 0 chr3 145682538 145682672 -81841906 + MER117 DNA MER1_type 52 188 -9 538 231 119 21 chr3 145682796 145683039 -81841539 + L1ME4a LINE L1 5846 6112 -9 4020 102 9 46 chr3 145683253 145683888 -81840690 - L1PA16 LINE L1 0 6166 5555 865 103 0 0 chr3 145684467 145684584 -81839994 - AluSg/x SINE Alu -117 193 77 1262 179 0 0 chr3 145684585 145684797 -81839781 - AluSx SINE Alu -100 212 1 892 259 110 59 chr3 145685061 145685527 -81839051 - L1MC4 LINE L1 -172 7870 7376 2246 105 0 0 chr3 145685527 145685831 -81838747 + AluSx SINE Alu 1 304 -8 892 259 110 59 chr3 145685831 145685855 -81838723 - L1MC4 LINE L1 -666 7376 7355 1902 97 4 4 chr3 145686001 145686268 -81838310 - AluY SINE Alu -9 302 36 326 239 106 6 chr3 145686289 145686423 -81838155 - MIR SINE MIR -36 172 63 527 274 99 65 chr3 145686813 145687076 -81837502 + MLT1J LTR MaLR 4 275 -236 408 274 128 21 chr3 145687141 145687375 -81837203 + MLT1J LTR MaLR 252 510 -1 352 286 119 94 chr3 145687389 145687816 -81836762 + L2 LINE L2 2835 3272 0 332 250 138 66 chr3 145688757 145688909 -81835669 + L2 LINE L2 3151 3313 0 2239 79 0 0 chr3 145689241 145689531 -81835047 + AluSg1 SINE Alu 1 290 -19 199 0 65 0 chr3 145689694 145689725 -81834853 + (GA)n Simple_repeat Simple_repeat 1 33 0 444 252 117 0 chr3 145689760 145689863 -81834715 - L2 LINE L2 -7 3306 3192 231 153 0 167 chr3 145689866 145689938 -81834640 - Charlie5 DNA MER1_type -27 2585 2526 885 191 19 0 chr3 145689940 145690097 -81834481 + AluJo SINE Alu 90 249 -63 344 179 8 154 chr3 145690201 145690324 -81834254 - L2 LINE L2 0 3313 3209 451 348 35 20 chr3 145690442 145690643 -81833935 + MIR3 SINE MIR 1 204 -4 609 236 27 51 chr3 145691082 145691263 -81833315 - L1MC/D LINE L1 -2167 5641 5462 207 260 187 8 chr3 145691664 145691787 -81832791 + L2 LINE L2 3112 3256 -16 518 221 71 7 chr3 145692422 145692576 -81832002 - L1ME4a LINE L1 -2 6119 5956 1659 119 28 0 chr3 145692621 145692872 -81831706 - AluSx SINE Alu -6 306 49 317 271 24 0 chr3 145693408 145693493 -81831085 + MER58B DNA MER1_type 206 292 -49 1176 219 89 37 chr3 145693525 145693960 -81830618 + MLT1E2 LTR MaLR 60 626 0 326 265 162 51 chr3 145694034 145694189 -81830389 - L1ME4a LINE L1 -302 5819 5628 2154 128 0 0 chr3 145694189 145694501 -81830077 - AluSx SINE Alu 0 312 1 326 265 162 51 chr3 145694501 145694579 -81829999 - L1ME4a LINE L1 -493 5628 5560 310 290 65 0 chr3 145695094 145695201 -81829377 + L1ME3A LINE L1 6044 6157 -13 1710 117 7 32 chr3 145695594 145695876 -81828702 + L1PA15 LINE L1 5891 6165 0 185 300 83 0 chr3 145695879 145695939 -81828639 + L2 LINE L2 3249 3313 0 1031 313 48 23 chr3 145696024 145696506 -81828072 - HAL1 LINE L1 -501 2006 1513 1139 171 28 0 chr3 145696507 145696724 -81827854 + MSTB1 LTR MaLR 186 408 -24 2231 172 35 57 chr3 145696733 145697221 -81827357 + MLT1D LTR MaLR 29 505 0 2531 264 133 38 chr3 145697230 145698485 -81826093 - HAL1 LINE L1 -1009 1498 125 1855 143 13 0 chr3 145698601 145698908 -81825670 - AluSp SINE Alu -2 311 1 395 226 164 53 chr3 145698917 145699125 -81825453 - MER97c DNA MER1_type? -41 1049 819 1417 187 62 87 chr3 145699135 145699183 -81825395 - MER97b DNA MER1_type? -421 632 584 1680 101 4 0 chr3 145699183 145699434 -81825144 + AluSx SINE Alu 54 305 0 1417 187 62 87 chr3 145699434 145699786 -81824792 - MER97b DNA MER1_type? -469 584 241 287 253 20 10 chr3 145699819 145699918 -81824660 + (TA)n Simple_repeat Simple_repeat 1 100 0 561 114 34 0 chr3 145700974 145701062 -81823516 - AluS SINE Alu -221 92 2 565 182 69 43 chr3 145701062 145701226 -81823352 - Tigger4(Zombi) DNA MER2_type -185 2546 2 939 132 35 0 chr3 145701761 145701905 -81822673 - AluSg/x SINE Alu -30 280 132 2288 88 3 0 chr3 145701905 145702210 -81822368 - AluSp SINE Alu -7 306 1 239 213 24 63 chr3 145702315 145702442 -81822136 + T-rich Low_complexity Low_complexity 2 123 0 233 237 10 31 chr3 145702979 145703076 -81821502 - L1ME LINE L1 -734 5430 5336 1901 97 16 72 chr3 145703081 145703402 -81821176 - AluSq SINE Alu -10 303 1 712 277 90 68 chr3 145703448 145703648 -81820930 - L1ME LINE L1 -841 5305 5092 3640 150 16 39 chr3 145703648 145703680 -81820898 - L1MA7 LINE L1 -1 6290 6259 1954 139 0 0 chr3 145703680 145703974 -81820604 - AluSx SINE Alu -18 294 1 3640 150 16 39 chr3 145703974 145704626 -81819952 - L1MA7 LINE L1 -32 6259 5622 712 277 90 68 chr3 145704626 145704779 -81819799 - L1ME LINE L1 -1054 5092 4944 695 138 0 144 chr3 145705045 145705113 -81819465 + MER53 DNA DNA 29 105 -84 2102 108 0 0 chr3 145705113 145705400 -81819178 + AluSx SINE Alu 3 289 -23 695 138 0 144 chr3 145705400 145705519 -81819059 + MER53 DNA DNA 105 189 0 506 230 171 7 chr3 145705704 145705856 -81818722 - MER5A DNA MER1_type -2 187 11 268 333 94 57 chr3 145706110 145706302 -81818276 + L2 LINE L2 3073 3271 -1 293 286 38 9 chr3 145706763 145706868 -81817710 - LTR67 LTR ERVL -25 532 425 414 329 43 0 chr3 145707349 145707489 -81817089 + MIR3 SINE MIR 47 192 -16 819 274 87 5 chr3 145707653 145707872 -81816706 - MIR SINE MIR -17 245 9 351 0 0 0 chr3 145707937 145707976 -81816602 + (CA)n Simple_repeat Simple_repeat 2 40 0 279 221 65 13 chr3 145708583 145708660 -81815918 - MIR3 SINE MIR -23 185 105 277 264 45 27 chr3 145708785 145708895 -81815683 + MER113 DNA MER1_type? 28 139 -382 316 331 62 0 chr3 145708960 145709090 -81815488 + MIR SINE MIR 35 172 -90 1900 217 76 34 chr3 145709876 145710402 -81814176 - MLT1H LTR MaLR 0 549 2 628 303 92 21 chr3 145710748 145710986 -81813592 - MIR SINE MIR 0 262 8 521 343 137 30 chr3 145710975 145711634 -81812944 + L2 LINE L2 1738 2466 -848 * 540 305 82 19 chr3 145711634 145711903 -81812675 - Charlie8 DNA MER1_type -2130 287 2 338 203 25 13 chr3 145712072 145712151 -81812427 - Charlie8 DNA MER1_type -2246 171 92 246 314 131 26 chr3 145712248 145712401 -81812177 - MIR SINE MIR -24 238 70 2565 113 32 8 chr3 145712734 145713106 -81811472 - MSTA LTR MaLR 0 428 48 610 115 31 0 chr3 145713212 145713308 -81811270 + L1MD1 LINE L1 6144 6242 0 2120 80 55 0 chr3 145713485 145713774 -81810804 - AluSx SINE Alu -7 305 1 966 126 86 0 chr3 145714616 145714767 -81809811 - AluSg/x SINE Alu -17 293 130 197 167 0 17 chr3 145714803 145714863 -81809715 + (TG)n Simple_repeat Simple_repeat 1 59 0 229 279 21 29 chr3 145714872 145715012 -81809566 + (TATG)n Simple_repeat Simple_repeat 4 142 0 * 341 246 27 44 chr3 145714938 145715121 -81809457 + (TG)n Simple_repeat Simple_repeat 1 180 0 26 30 0 0 chr3 145715296 145715329 -81809249 + GC_rich Low_complexity Low_complexity 1 33 0 430 399 6 0 chr3 145715498 145715661 -81808917 + C-rich Low_complexity Low_complexity 3 166 0 2655 186 77 72 chr3 145715775 145716551 -81808027 + L1ME2 LINE L1 5385 6164 0 1859 141 10 3 chr3 145717138 145717435 -81807143 - AluSx SINE Alu -13 299 1 1379 272 48 50 chr3 145718452 145719099 -81805479 + HAL1b LINE L1 1 646 -702 1928 115 14 3 chr3 145719213 145719499 -81805079 + AluSx SINE Alu 1 289 -23 2542 164 120 13 chr3 145719631 145720179 -81804399 - L1MD1 LINE L1 -319 6317 5711 1932 124 3 7 chr3 145720194 145720492 -81804086 - AluSx SINE Alu -11 301 5 526 158 0 0 chr3 145720514 145720609 -81803969 - AluJ/FRAM SINE Alu -1 311 217 3283 229 39 38 chr3 145720609 145721259 -81803319 - L1MD1 LINE L1 -817 5723 5070 720 207 0 15 chr3 145721259 145721394 -81803184 - FLAM_C SINE Alu 0 133 1 3283 229 39 38 chr3 145721394 145721801 -81802777 - L1MD1 LINE L1 -1470 5070 4665 6712 160 62 42 chr3 145721921 145722138 -81802440 - L1MD1 LINE L1 -3890 2650 2439 183 42 0 0 chr3 145722146 145722170 -81802408 + (GTTTG)n Simple_repeat Simple_repeat 2 25 0 1612 122 114 8 chr3 145722170 145722423 -81802155 - AluSg SINE Alu -26 284 1 1479 196 14 10 chr3 145722425 145722721 -81801857 - AluJb SINE Alu -15 297 1 6712 160 62 42 chr3 145722721 145724134 -81800444 - L1MD1 LINE L1 -4101 2439 984 1212 199 5 14 chr3 145724130 145724351 -81800227 - L1MD1 LINE L1 -6305 235 17 * 549 278 65 44 chr3 145727544 145727791 -81796787 - MIR SINE MIR -11 251 10 816 245 40 54 chr3 145728069 145728347 -81796231 - MLT1E2 LTR MaLR -232 394 121 206 268 72 26 chr3 145728371 145728524 -81796054 - L2 LINE L2 -312 3001 2842 1331 188 52 87 chr3 145728745 145729112 -81795466 + MLT1B LTR MaLR 37 390 0 261 286 12 12 chr3 145729418 145729502 -81795076 + MLT1J LTR MaLR 97 180 -331 1473 131 0 0 chr3 145729539 145729745 -81794833 + AluSc SINE Alu 1 206 -103 588 286 12 6 chr3 145729997 145730158 -81794420 + MIR SINE MIR 58 219 -43 245 282 13 0 chr3 145731039 145731117 -81793461 + Charlie8 DNA MER1_type 1350 1428 -989 207 0 0 0 chr3 145731281 145731304 -81793274 + (A)n Simple_repeat Simple_repeat 1 23 0 272 325 131 7 chr3 145733273 145733462 -81791116 - MIR SINE MIR -34 228 20 273 312 54 0 chr3 145735301 145735394 -81789184 - MIR SINE MIR -48 214 117 182 180 0 80 chr3 145736379 145736429 -81788149 - L2 LINE L2 0 3313 3268 282 279 38 13 chr3 145736472 145736551 -81788027 - MIR SINE MIR -70 192 112 357 260 30 10 chr3 145737584 145737684 -81786894 + MER5B DNA MER1_type 10 111 -67 313 245 71 10 chr3 145739486 145739584 -81784994 + MER5B DNA MER1_type 8 111 -67 183 100 0 0 chr3 145740607 145740637 -81783941 + (CAGAGA)n Simple_repeat Simple_repeat 2 31 0 209 303 76 0 chr3 145740714 145740780 -81783798 + MIR SINE MIR 113 183 -79 2351 68 14 0 chr3 145740790 145741085 -81783493 + AluSg SINE Alu 1 299 -11 264 346 149 5 chr3 145741431 145741619 -81782959 - MIR SINE MIR -6 256 42 950 241 169 9 chr3 145742475 145742893 -81781685 - MLT1K LTR MaLR 0 588 42 279 328 84 8 chr3 145742898 145743017 -81781561 - MIR SINE MIR -63 145 18 616 251 96 0 chr3 145743706 145743873 -81780705 - MIR SINE MIR -59 203 21 345 293 45 30 chr3 145745128 145745261 -81779317 - MIR SINE MIR -81 181 47 1775 172 21 67 chr3 145746630 145747007 -81777571 - L1M3 LINE L1 -451 5732 5376 2304 98 3 0 chr3 145747007 145747313 -81777265 - AluSp SINE Alu 0 313 7 1775 172 21 67 chr3 145747313 145747371 -81777207 - L1M3 LINE L1 -807 5376 5317 2054 86 0 18 chr3 145747411 145747690 -81776888 - L1PA10 LINE L1 0 6168 5895 220 255 0 0 chr3 145747849 145747896 -81776682 + L2 LINE L2 3193 3239 -33 256 289 107 31 chr3 145747977 145748202 -81776376 + L2 LINE L2 2063 2304 -1010 584 289 94 6 chr3 145748306 145748486 -81776092 + MIR SINE MIR 59 254 -8 1694 152 22 0 chr3 145748507 145748821 -81775757 - AluSx SINE Alu 0 320 1 208 208 0 38 chr3 145749023 145749076 -81775502 + CT-rich Low_complexity Low_complexity 5 55 0 287 348 0 0 chr3 145749631 145749720 -81774858 - MIR SINE MIR -82 126 38 235 379 20 26 chr3 145749723 145749876 -81774702 + L2 LINE L2 2904 3055 -217 369 311 130 40 chr3 145749888 145750065 -81774513 + MER91A DNA MER1_type 1 193 -3 448 306 111 19 chr3 145750497 145750713 -81773865 - MIR SINE MIR -6 256 21 2053 115 7 7 chr3 145750801 145751096 -81773482 - AluSg SINE Alu -15 295 1 465 270 17 37 chr3 145751107 145751268 -81773310 - MIR SINE MIR -60 148 43 314 350 35 0 chr3 145751469 145751612 -81772966 + MIR3 SINE MIR 58 205 -3 348 292 55 52 chr3 145751899 145752245 -81772333 - MLT1K LTR MaLR -15 573 227 282 306 89 61 chr3 145752433 145752613 -81771965 - MIR SINE MIR -56 206 22 387 271 120 8 chr3 145752898 145753031 -81771547 - L1ME4a LINE L1 0 6121 5974 972 137 62 0 chr3 145753033 145753194 -81771384 - AluSg/x SINE Alu -16 296 126 2145 123 3 3 chr3 145753194 145753503 -81771075 - AluSx SINE Alu -3 309 1 745 389 97 13 chr3 145753503 145754051 -81770527 - L1ME4a LINE L1 -140 5981 5388 2205 100 7 0 chr3 145754066 145754365 -81770213 + AluSx SINE Alu 1 301 -11 217 384 92 32 chr3 145754671 145755082 -81769496 - L3 LINE CR1 -628 949 514 1842 146 3 17 chr3 145755167 145755455 -81769123 - AluSx SINE Alu -20 292 9 2119 109 0 3 chr3 145756175 145756468 -81768110 + AluSx SINE Alu 15 306 -6 971 106 0 8 chr3 145756468 145756600 -81767978 - AluSq/x SINE Alu -182 131 1 1069 186 24 16 chr3 145757059 145757311 -81767267 + L1MC4 LINE L1 7420 7673 -369 200 310 80 26 chr3 145758218 145758331 -81766247 + MIR3 SINE MIR 89 207 -1 272 311 0 38 chr3 145759004 145759110 -81765468 + CT-rich Low_complexity Low_complexity 1 102 0 2192 104 0 7 chr3 145759405 145759714 -81764864 + AluSc SINE Alu 1 307 -2 2287 186 31 62 chr3 145759750 145760390 -81764188 - L1MC4 LINE L1 -3 8039 7420 2143 102 13 13 chr3 145761058 145761362 -81763216 + AluSx SINE Alu 1 304 -8 3898 126 48 8 chr3 145761547 145762173 -81762405 + MER39B LTR ERV1 3 653 0 394 226 15 92 chr3 145763709 145763891 -81760687 + MIR SINE MIR 4 175 -79 387 258 64 39 chr3 145764123 145764302 -81760276 - MIR SINE MIR -29 233 47 803 214 123 0 chr3 145764783 145764970 -81759608 + MER58A DNA MER1_type 4 213 -11 194 308 15 15 chr3 145766033 145766098 -81758480 - MIR SINE MIR -68 140 76 748 281 181 32 chr3 145767734 145767885 -81756693 - L2 LINE L2 -26 3287 3160 1949 147 0 35 chr3 145767885 145768204 -81756374 + AluJb SINE Alu 3 310 -2 748 281 181 32 chr3 145768204 145768745 -81755833 - L2 LINE L2 -153 3160 2476 224 140 40 0 chr3 145768783 145768833 -81755745 + (CACG)n Simple_repeat Simple_repeat 4 55 0 239 100 57 14 chr3 145770553 145770623 -81753955 + (CCCCG)n Simple_repeat Simple_repeat 2 74 0 28 0 0 0 chr3 145770714 145770742 -81753836 + GC_rich Low_complexity Low_complexity 1 28 0 502 298 60 0 chr3 145773135 145773286 -81751292 + MIR SINE MIR 2 161 -101 384 22 0 0 chr3 145775337 145775382 -81749196 + (CA)n Simple_repeat Simple_repeat 2 46 0 1340 197 23 11 chr3 145776775 145777039 -81747539 + AluJb SINE Alu 1 267 -45 238 287 0 101 chr3 145777055 145777184 -81747394 + MIR SINE MIR 51 166 -96 361 213 8 47 chr3 145777192 145777319 -81747259 + L1M4 LINE L1 4891 5012 -1134 1028 223 98 3 chr3 145777353 145777649 -81746929 + L1MC4 LINE L1 6565 6888 -1154 1353 197 15 21 chr3 145778200 145778548 -81746030 + L1MC4 LINE L1 7553 7898 -144 373 117 32 31 chr3 145778568 145778692 -81745886 + L1M2 LINE L1 5325 5450 -720 4098 99 32 24 chr3 145778809 145780014 -81744564 - L1PA8A LINE L1 -240 5891 4682 982 183 13 67 chr3 145780009 145780315 -81744263 - L1M LINE L1 -815 5331 5062 * 311 248 6 102 chr3 145780318 145780475 -81744103 - L1MC4 LINE L1 -137 7905 7764 2334 71 0 3 chr3 145780943 145781239 -81743339 + AluSx SINE Alu 5 299 -13 186 262 131 28 chr3 145781770 145781877 -81742701 + MIR SINE MIR 13 130 -132 207 191 0 0 chr3 145782657 145782699 -81741879 + (TTG)n Simple_repeat Simple_repeat 1 42 0 2090 136 0 0 chr3 145782701 145783011 -81741567 - AluJb SINE Alu 0 312 3 269 285 211 31 chr3 145783323 145783579 -81740999 - L2 LINE L2 0 3272 2971 991 248 31 19 chr3 145784276 145784534 -81740044 + MIR SINE MIR 2 262 0 194 200 0 0 chr3 145784829 145784869 -81739709 - MIR SINE MIR -74 134 95 1795 215 20 3 chr3 145785116 145785470 -81739108 - L1MD1 LINE L1 -1 6241 5882 710 239 83 7 chr3 145786255 145786440 -81738138 - MLT1J LTR MaLR -239 199 12 488 259 62 25 chr3 145786440 145786602 -81737976 + MIR SINE MIR 95 262 0 2254 105 0 0 chr3 145787232 145787537 -81737041 + AluSx SINE Alu 1 305 -7 2069 102 0 58 chr3 145788163 145788488 -81736090 - AluSx SINE Alu -6 306 1 399 287 0 0 chr3 145789495 145789582 -81734996 - L1MC4 LINE L1 -1342 6700 6614 378 322 0 0 chr3 145789510 145789600 -81734978 + L1MC4 LINE L1 6614 6703 -1339 * 357 203 14 14 chr3 145789553 145789613 -81734965 - L1MCa LINE L1 -4362 2064 2002 * 2163 100 7 0 chr3 145789613 145789914 -81734664 - AluSx SINE Alu -8 304 2 357 203 14 14 chr3 145789914 145789927 -81734651 - L1MCa LINE L1 -4423 2003 1991 302 321 72 65 chr3 145790039 145790301 -81734277 - L2 LINE L2 0 3313 3050 715 313 228 4 chr3 145790467 145791369 -81733209 - L2 LINE L2 -524 2790 1687 207 0 0 0 chr3 145791788 145791811 -81732767 + (A)n Simple_repeat Simple_repeat 1 23 0 574 316 149 3 chr3 145795289 145795618 -81728960 + L2 LINE L2 2520 2896 -418 228 318 45 36 chr3 145795653 145795763 -81728815 + L2 LINE L2 3105 3215 -98 243 88 0 0 chr3 145795838 145795872 -81728706 + (TGAG)n Simple_repeat Simple_repeat 2 35 0 609 222 0 0 chr3 145796048 145796224 -81728354 + (TGAG)n Simple_repeat Simple_repeat 1 176 0 434 169 28 34 chr3 145796266 145796444 -81728134 + (TGAA)n Simple_repeat Simple_repeat 3 179 0 568 208 6 11 chr3 145796481 145796659 -81727919 + (TGAA)n Simple_repeat Simple_repeat 4 180 0 208 242 16 16 chr3 145796659 145796721 -81727857 + (TGAG)n Simple_repeat Simple_repeat 3 64 0 466 242 6 6 chr3 145796722 145796900 -81727678 + (TGAA)n Simple_repeat Simple_repeat 2 179 0 752 186 0 16 chr3 145796921 145797104 -81727474 + (TGAA)n Simple_repeat Simple_repeat 1 180 0 501 199 17 11 chr3 145797167 145797343 -81727235 + (TGAA)n Simple_repeat Simple_repeat 3 179 0 341 250 23 6 chr3 145797377 145797549 -81727029 + (TGAA)n Simple_repeat Simple_repeat 1 175 0 260 207 17 0 chr3 145797564 145797622 -81726956 + (TGAG)n Simple_repeat Simple_repeat 2 60 0 618 217 21 16 chr3 145797623 145798067 -81726511 + (TGAA)n Simple_repeat Simple_repeat 1 446 0 203 152 22 0 chr3 145798074 145798120 -81726458 + GA-rich Low_complexity Low_complexity 4 50 0 557 256 44 0 chr3 145798163 145798334 -81726244 + MER45A DNA AcHobo 1 178 0 189 252 0 117 chr3 145798542 145798645 -81725933 - L2 LINE L2 -21 3251 3161 1969 128 3 0 chr3 145799185 145799475 -81725103 - AluJo SINE Alu -11 301 11 2021 119 3 0 chr3 145800192 145800522 -81724056 + AluSq SINE Alu 1 331 0 21 36 0 0 chr3 145801074 145801102 -81723476 + GC_rich Low_complexity Low_complexity 1 28 0 212 213 16 0 chr3 145801340 145801401 -81723177 + (TG)n Simple_repeat Simple_repeat 1 62 0 219 253 84 24 chr3 145803281 145803364 -81721214 + MIR SINE MIR 175 262 0 193 288 0 100 chr3 145804004 145804037 -81720541 - MIR SINE MIR -74 188 153 2179 101 0 3 chr3 145804037 145804334 -81720244 - AluSc SINE Alu -13 296 1 193 288 0 100 chr3 145804334 145804380 -81720198 - MIR SINE MIR -109 153 117 1963 126 10 0 chr3 145804670 145804963 -81719615 - AluSx SINE Alu -12 300 5 217 400 36 0 chr3 145804992 145805132 -81719446 + L3b LINE CR1 1298 1442 -141 606 295 11 16 chr3 145806489 145806672 -81717906 - MIR SINE MIR -53 209 28 245 29 0 29 chr3 145806986 145807021 -81717557 + (TTTC)n Simple_repeat Simple_repeat 1 34 0 1675 150 46 29 chr3 145807023 145807330 -81717248 - AluJb SINE Alu 0 312 1 180 0 0 0 chr3 145807868 145807888 -81716690 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 877 243 18 23 chr3 145808296 145808514 -81716064 + MIR SINE MIR 11 227 -35 243 344 0 47 chr3 145808541 145808669 -81715909 - MIR SINE MIR -15 247 126 234 318 62 39 chr3 145809702 145809831 -81714747 - MIR SINE MIR -52 210 79 409 232 18 45 chr3 145809961 145810073 -81714505 - MIR SINE MIR -63 199 91 192 327 68 49 chr3 145810845 145811007 -81713571 + L2 LINE L2 3057 3221 -51 249 288 15 0 chr3 145811831 145811897 -81712681 - L2 LINE L2 -539 2775 2709 842 146 133 19 chr3 145812397 145812555 -81712023 + MER5B DNA MER1_type 3 178 0 1470 132 174 4 chr3 145813584 145813849 -81710729 - AluJb SINE Alu -2 310 1 186 302 206 0 chr3 145813849 145813975 -81710603 + MIR SINE MIR 96 247 -15 228 340 97 19 chr3 145814194 145814400 -81710178 - MIR SINE MIR -24 238 17 2094 124 0 3 chr3 145814510 145814817 -81709761 - AluSx SINE Alu -6 306 1 420 246 17 11 chr3 145815475 145815650 -81708928 + (CATA)n Simple_repeat Simple_repeat 1 176 0 2259 98 0 9 chr3 145817357 145817672 -81706906 - AluSx SINE Alu 0 312 1 1577 204 3 13 chr3 145817702 145818015 -81706563 + AluJo SINE Alu 1 310 -2 308 269 134 8 chr3 145818856 145818975 -81705603 - MIR SINE MIR -12 250 117 484 322 102 35 chr3 145819052 145819425 -81705153 - MLT1J LTR MaLR -111 400 3 732 181 34 57 chr3 145820310 145820487 -81704091 - MER5B DNA MER1_type -3 175 3 271 330 11 0 chr3 145821804 145821898 -81702680 + MIR SINE MIR 106 200 -62 455 181 112 0 chr3 145821898 145822014 -81702564 - MER5A DNA MER1_type -4 185 57 234 0 0 0 chr3 145822025 145822051 -81702527 + (CTG)n Simple_repeat Simple_repeat 1 26 0 233 299 46 11 chr3 145822262 145822349 -81702229 - L2 LINE L2 -1 3312 3223 277 278 164 38 chr3 145822524 145822787 -81701791 - L2 LINE L2 -360 2954 2659 773 290 37 5 chr3 145823280 145823497 -81701081 - MIR SINE MIR -11 251 28 2173 157 14 11 chr3 145823708 145824072 -81700506 - MLT1A1 LTR MaLR 0 365 1 433 263 88 0 chr3 145824326 145824463 -81700115 + MIR SINE MIR 63 211 -51 347 345 110 14 chr3 145824472 145824681 -81699897 + MIR SINE MIR 12 240 -22 1824 148 3 26 chr3 145825105 145825410 -81699168 + AluJb SINE Alu 1 298 -14 196 167 0 0 chr3 145825947 145825983 -81698595 + MIR SINE MIR 77 112 -150 1255 158 14 10 chr3 145826448 145826657 -81697921 + AluJo SINE Alu 10 219 -93 392 190 69 26 chr3 145826972 145827088 -81697490 - L2 LINE L2 -1 3312 3192 256 300 12 0 chr3 145827199 145827279 -81697299 + MIR SINE MIR 106 186 -76 2224 112 3 0 chr3 145827387 145827692 -81696886 - AluSx SINE Alu -6 306 1 381 234 297 0 chr3 145827787 145827818 -81696760 + MER5A DNA MER1_type 2 23 -166 180 77 0 0 chr3 145827818 145827844 -81696734 + (CAG)n Simple_repeat Simple_repeat 1 26 0 381 234 297 0 chr3 145827844 145827957 -81696621 + MER5A DNA MER1_type 23 189 0 327 304 38 0 chr3 145828313 145828392 -81696186 + MIR SINE MIR 2 83 -179 1229 244 42 3 chr3 145828399 145828759 -81695819 - L1M4 LINE L1 -2440 3706 3333 474 293 43 6 chr3 145828759 145828923 -81695655 + MIR SINE MIR 93 262 0 327 274 151 0 chr3 145829179 145829285 -81695293 - L2 LINE L2 0 3272 3151 389 314 8 8 chr3 145829391 145829515 -81695063 + MIR SINE MIR 31 154 -108 254 96 0 58 chr3 145829563 145829615 -81694963 + (ATGGTG)n Simple_repeat Simple_repeat 1 49 0 183 42 0 0 chr3 145829670 145829694 -81694884 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1944 145 0 7 chr3 145829697 145829979 -81694599 - AluSx SINE Alu -32 280 1 238 274 186 9 chr3 145830420 145830533 -81694045 - L2 LINE L2 -8 3264 3132 404 179 147 96 chr3 145830672 145830828 -81693750 + MIR SINE MIR 84 247 -15 691 258 53 34 chr3 145831746 145831955 -81692623 + MIR SINE MIR 46 258 -4 183 342 133 8 chr3 145832107 145832227 -81692351 - MIR SINE MIR -4 258 124 200 264 116 66 chr3 145833876 145833997 -81690581 + MIR SINE MIR 124 250 -12 182 310 35 0 chr3 145835614 145835672 -81688906 + L2 LINE L2 3205 3264 -8 253 312 142 14 chr3 145835825 145835966 -81688612 - MIR SINE MIR -43 219 61 290 177 41 0 chr3 145836467 145836541 -81688037 + MIR SINE MIR 60 138 -70 207 294 0 0 chr3 145837311 145837362 -81687216 - L2 LINE L2 -25 3288 3238 2396 96 6 13 chr3 145837541 145837855 -81686723 + AluSx SINE Alu 1 312 0 192 212 72 48 chr3 145838213 145838299 -81686279 + MIR SINE MIR 36 123 -85 836 252 174 33 chr3 145838310 145838734 -81685844 - L2 LINE L2 0 3313 2830 213 178 0 0 chr3 145839276 145839321 -81685257 + (TG)n Simple_repeat Simple_repeat 2 46 0 439 212 137 94 chr3 145839438 145839844 -81684734 - MLT1H LTR MaLR -13 536 39 313 278 43 9 chr3 145839982 145840097 -81684481 - MLT1J LTR MaLR -3 508 390 1213 184 119 1 chr3 145840097 145840540 -81684038 - MER74A LTR ERVL 0 558 2 547 263 94 42 chr3 145840548 145840912 -81683666 - MLT1J LTR MaLR -128 383 3 310 245 25 69 chr3 145840912 145841071 -81683507 - MER113 DNA MER1_type? -320 201 50 190 337 22 22 chr3 145842180 145842269 -81682309 + MIR SINE MIR 108 196 -66 182 267 47 47 chr3 145842902 145842988 -81681590 + MIR SINE MIR 34 119 -143 216 306 102 0 chr3 145843061 145843159 -81681419 - MIR SINE MIR -108 154 47 284 333 69 6 chr3 145844160 145844319 -81680259 + L1MC4a LINE L1 5723 5891 -1917 2286 95 3 7 chr3 145844359 145844655 -81679923 + AluSq SINE Alu 1 295 -18 1657 219 102 34 chr3 145845049 145845557 -81679021 - MLT1H LTR MaLR -3 546 4 325 287 147 0 chr3 145845979 145846108 -81678470 - L1ME4a LINE L1 -1 6120 5973 550 268 187 0 chr3 145846587 145846942 -81677636 + L2 LINE L2 2643 3052 -261 273 323 31 15 chr3 145847752 145847882 -81676696 - L2 LINE L2 -215 3057 2926 1677 159 159 9 chr3 145847958 145848297 -81676281 - MLT1B LTR MaLR 0 390 1 397 63 13 76 chr3 145848311 145848390 -81676188 + (TC)n Simple_repeat Simple_repeat 1 74 0 325 280 90 10 chr3 145849231 145849331 -81675247 - L2 LINE L2 -21 3251 3144 212 191 32 32 chr3 145849666 145849729 -81674849 + (CAGAGA)n Simple_repeat Simple_repeat 2 64 0 2227 159 44 7 chr3 145851068 145851476 -81673102 - L1PB4 LINE L1 -2 6154 5732 432 264 77 48 chr3 145851511 145851757 -81672821 - MIR SINE MIR -7 255 1 243 0 0 0 chr3 145853163 145853190 -81671388 + (T)n Simple_repeat Simple_repeat 1 27 0 2078 103 4 0 chr3 145853648 145853920 -81670658 + AluSx SINE Alu 1 273 -39 2266 115 0 0 chr3 145854149 145854453 -81670125 - AluSx SINE Alu -8 304 1 553 314 105 3 chr3 145854543 145854858 -81669720 + L1MB3 LINE L1 5478 5824 -297 852 237 51 15 chr3 145856327 145856601 -81667977 + L1MB3 LINE L1 5898 6181 -2 332 262 12 0 chr3 145856602 145856686 -81667892 + MER102a DNA MER1_type 96 180 -150 604 320 52 4 chr3 145857363 145857594 -81666984 - MIR SINE MIR -4 258 17 439 275 79 28 chr3 145857756 145857934 -81666644 + MER3 DNA MER1_type 1 187 -22 2149 120 3 13 chr3 145858436 145858737 -81665841 - AluJb SINE Alu -14 298 1 1950 119 53 0 chr3 145858833 145859118 -81665460 + AluSq SINE Alu 9 308 -5 579 240 155 17 chr3 145859426 145859517 -81665061 - L1M4 LINE L1 -1346 4800 4723 1798 150 4 4 chr3 145859517 145859777 -81664801 + AluSx SINE Alu 37 296 -16 579 240 155 17 chr3 145859777 145859969 -81664609 - L1M4 LINE L1 -1423 4723 4462 210 388 0 0 chr3 145860361 145860441 -81664137 + L2 LINE L2 2568 2647 -667 638 279 51 9 chr3 145861894 145862109 -81662469 - MIR SINE MIR 0 262 39 330 237 114 59 chr3 145862445 145862756 -81661822 + MLT1F1 LTR MaLR 206 545 -22 1265 162 33 0 chr3 145863131 145863341 -81661237 + AluJo SINE Alu 87 303 -9 2293 113 0 0 chr3 145863413 145863704 -81660874 - AluSx SINE Alu -21 291 1 493 207 0 45 chr3 145863929 145864040 -81660538 - L2 LINE L2 0 3313 3208 391 287 152 6 chr3 145864563 145864727 -81659851 - MIR SINE MIR 0 262 75 2126 108 0 10 chr3 145864904 145865201 -81659377 + AluSx SINE Alu 1 294 -18 228 317 133 33 chr3 145865888 145866128 -81658450 + L3b LINE CR1 1187 1450 -133 565 253 194 25 chr3 145866354 145866714 -81657864 - L1ME3A LINE L1 -223 5947 5527 181 300 67 0 chr3 145867770 145867830 -81656748 + MIR SINE MIR 10 73 -189 234 250 115 0 chr3 145868208 145868304 -81656274 + L2 LINE L2 2698 2804 -510 4219 94 2 0 chr3 145868389 145868942 -81655636 - MER41A LTR ERV1 0 554 1 363 295 130 25 chr3 145869466 145869666 -81654912 + MIR SINE MIR 29 249 -13 1196 261 35 8 chr3 145869991 145870366 -81654212 - MER74B LTR ERVL 0 622 238 437 155 12 12 chr3 145870389 145870473 -81654105 - MER74A LTR ERVL -474 84 1 315 0 0 0 chr3 145870525 145870560 -81654018 + (TAA)n Simple_repeat Simple_repeat 2 36 0 794 164 16 0 chr3 145870577 145870699 -81653879 + FLAM_A SINE Alu 1 124 -9 201 256 24 61 chr3 145870873 145870955 -81653623 - L2 LINE L2 -4 3268 3190 216 318 76 45 chr3 145871745 145871877 -81652701 - L2 LINE L2 -784 2530 2395 300 321 31 77 chr3 145872152 145872301 -81652277 + L1MC4a LINE L1 4797 4936 -1210 513 168 17 17 chr3 145872301 145872420 -81652158 + L1MB5 LINE L1 6056 6174 0 300 321 31 77 chr3 145872420 145872466 -81652112 + L1MC4a LINE L1 4936 4983 -1163 601 170 78 7 chr3 145872470 145872623 -81651955 + L1MB3 LINE L1 6019 6182 -1 1295 252 99 134 chr3 145872829 145874164 -81650414 + L1MC4a LINE L1 5263 6531 -1277 2141 133 23 0 chr3 145874164 145874464 -81650114 - AluJb SINE Alu -5 307 1 1295 252 99 134 chr3 145874464 145874769 -81649809 + L1MC4a LINE L1 6531 6845 -963 364 270 65 23 chr3 145874849 145875060 -81649518 + L1MC5 LINE L1 7512 7850 -192 298 237 30 76 chr3 145875099 145875164 -81649414 - L1MC4 LINE L1 0 8042 7984 2235 89 36 7 chr3 145875164 145875466 -81649112 + AluY SINE Alu 1 311 0 298 237 30 76 chr3 145875466 145875531 -81649047 - L1MC4 LINE L1 -58 7984 7918 411 137 25 0 chr3 145875533 145875656 -81648922 + CT-rich Low_complexity Low_complexity 1 126 0 1227 194 65 54 chr3 145875656 145876105 -81648473 - AluJo SINE Alu 0 452 1 247 339 8 0 chr3 145876293 145876411 -81648167 + L1MC4 LINE L1 5846 5964 -1844 2651 180 48 31 chr3 145877261 145877708 -81646870 + L1MB3 LINE L1 5589 6050 -133 2256 144 37 3 chr3 145877708 145878084 -81646494 - MLT1B LTR MaLR -1 389 1 2651 180 48 31 chr3 145878084 145878218 -81646360 + L1MB3 LINE L1 6050 6180 -3 539 231 38 25 chr3 145879075 145879235 -81645343 + MIR SINE MIR 58 219 -43 226 308 13 0 chr3 145880116 145880194 -81644384 + MER102a DNA MER1_type 252 330 0 225 0 0 0 chr3 145880359 145880384 -81644194 + (A)n Simple_repeat Simple_repeat 1 25 0 22 56 0 0 chr3 145881009 145881045 -81643533 + AT_rich Low_complexity Low_complexity 1 36 0 3557 159 22 17 chr3 145881172 145881893 -81642685 + L1MB2 LINE L1 5447 6171 0 712 259 133 11 chr3 145882068 145882338 -81642240 + L1MC4 LINE L1 6765 7067 -975 1887 258 95 61 chr3 145882370 145883331 -81641247 + HAL1 LINE L1 21 1013 -1494 247 274 0 41 chr3 145883806 145883879 -81640699 - Charlie8 DNA MER1_type 0 2417 2348 2200 132 0 3 chr3 145884145 145884448 -81640130 + AluSx SINE Alu 1 302 -10 390 185 0 0 chr3 145885290 145885371 -81639207 + CT-rich Low_complexity Low_complexity 2 82 0 916 294 109 49 chr3 145886674 145887625 -81636953 + HAL1 LINE L1 920 1927 -580 324 348 81 38 chr3 145887815 145888025 -81636553 + HAL1 LINE L1 825 1043 -1464 188 391 135 0 chr3 145888025 145888217 -81636361 + L3 LINE CR1 1355 1572 -5 229 347 91 17 chr3 145888219 145888395 -81636183 - L2 LINE L2 -616 2698 2510 1734 177 17 7 chr3 145888829 145889123 -81635455 - AluJo SINE Alu -15 297 1 2466 82 0 0 chr3 145889124 145889417 -81635161 - AluSg SINE Alu -13 297 5 1000 120 0 33 chr3 145889418 145889568 -81635010 - AluJo SINE Alu -167 145 1 212 280 43 32 chr3 145889568 145889661 -81634917 + MIR3 SINE MIR 115 208 0 245 348 45 0 chr3 145889733 145889822 -81634756 + L2 LINE L2 3148 3240 -32 205 286 92 34 chr3 145889902 145890108 -81634470 + L2 LINE L2 2063 2280 -1034 518 279 101 6 chr3 145890228 145890407 -81634171 + MIR SINE MIR 59 254 -8 1190 131 0 0 chr3 145890428 145890625 -81633953 - AluSg/x SINE Alu 0 320 124 1904 104 4 8 chr3 145890627 145890878 -81633700 + AluSq SINE Alu 1 250 -63 561 258 82 12 chr3 145891077 145891333 -81633245 + AluJo SINE Alu 33 306 -6 2200 127 3 0 chr3 145891341 145891641 -81632937 + AluSx SINE Alu 3 303 -9 341 252 48 20 chr3 145891747 145891817 -81632761 + L1ME4a LINE L1 5967 6034 -87 2268 113 0 0 chr3 145891817 145892133 -81632445 - AluSq SINE Alu 0 313 1 341 252 48 20 chr3 145892133 145892209 -81632369 + L1ME4a LINE L1 6034 6117 -4 336 309 148 38 chr3 145892594 145892830 -81631748 + MIR SINE MIR 1 262 0 216 372 23 16 chr3 145893587 145893716 -81630862 - L2 LINE L2 -6 3307 3178 2313 112 0 0 chr3 145893814 145894119 -81630459 - AluSx SINE Alu -7 305 1 364 373 0 0 chr3 145894379 145894505 -81630073 + MIR3 SINE MIR 73 198 -10 195 308 46 0 chr3 145894653 145894718 -81629860 + L3 LINE CR1 924 991 -586 194 247 55 104 chr3 145894946 145895128 -81629450 + MIR SINE MIR 89 261 -1 * 240 283 83 69 chr3 145895123 145895268 -81629310 + L3 LINE CR1 1167 1313 -264 2071 129 7 7 chr3 145895428 145895731 -81628847 + AluSx SINE Alu 1 303 -9 1527 221 113 20 chr3 145896374 145896781 -81627797 + MLT1H LTR MaLR 59 503 -46 757 231 59 0 chr3 145896783 145896952 -81627626 - MER5A DNA MER1_type -5 184 6 311 154 0 0 chr3 145896962 145897014 -81627564 + MLT1H LTR MaLR 498 549 0 219 69 0 0 chr3 145897078 145897107 -81627471 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 273 368 49 0 chr3 145897107 145897265 -81627313 - L2 LINE L2 -5 3308 3143 264 122 49 12 chr3 145897722 145897780 -81626798 - MER5A DNA MER1_type -125 64 4 2276 112 6 10 chr3 145897798 145898112 -81626466 - AluSq SINE Alu 0 313 1 2314 87 3 0 chr3 145898115 145898403 -81626175 - AluSq SINE Alu -18 295 7 277 328 84 46 chr3 145898452 145898941 -81625637 + L2 LINE L2 2770 3270 -2 376 220 143 0 chr3 145898948 145899039 -81625539 - MIR3 SINE MIR -49 159 56 270 0 0 0 chr3 145899050 145899080 -81625498 + (CA)n Simple_repeat Simple_repeat 1 30 0 328 244 144 11 chr3 145899087 145899177 -81625401 - MIR3 SINE MIR -51 157 56 267 270 0 80 chr3 145899713 145899813 -81624765 - L2 LINE L2 -25 3288 3197 201 154 0 0 chr3 145902906 145902945 -81621633 + (CA)n Simple_repeat Simple_repeat 1 39 0 30 59 0 0 chr3 145903118 145903169 -81621409 + GC_rich Low_complexity Low_complexity 1 51 0 23 68 0 0 chr3 145903209 145903253 -81621325 + GC_rich Low_complexity Low_complexity 1 44 0 206 301 21 14 chr3 145903271 145903414 -81621164 + (CGG)n Simple_repeat Simple_repeat 1 144 0 37 23 0 0 chr3 145903453 145903497 -81621081 + GC_rich Low_complexity Low_complexity 1 44 0 251 258 63 69 chr3 145903776 145903935 -81620643 + MIR3 SINE MIR 6 163 -45 180 337 54 106 chr3 145903992 145904342 -81620236 - L2 LINE L2 -50 3222 2891 183 42 0 0 chr3 145904787 145904811 -81619767 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 379 296 109 48 chr3 145904841 145905318 -81619260 + L1M4 LINE L1 3964 4469 -1677 576 192 0 54 chr3 145905319 145905449 -81619129 + FLAM_A SINE Alu 1 123 -10 1919 184 0 0 chr3 145905455 145905754 -81618824 + AluJo SINE Alu 1 299 -13 4004 143 76 33 chr3 145905762 145905981 -81618597 + L1MB8 LINE L1 5199 5407 -771 2109 142 0 0 chr3 145905981 145906276 -81618302 + AluSx SINE Alu 1 295 -17 4004 143 76 33 chr3 145906276 145906935 -81617643 + L1MB8 LINE L1 5407 6124 -54 1262 129 0 0 chr3 145906951 145907121 -81617457 - AluSg/x SINE Alu -21 291 122 1608 173 49 7 chr3 145907188 145907472 -81617106 - AluJo SINE Alu -6 306 11 192 179 0 0 chr3 145907494 145907533 -81617045 + (CA)n Simple_repeat Simple_repeat 2 40 0 239 333 51 43 chr3 145907652 145907886 -81616692 + L2 LINE L2 1682 1917 -1397 317 212 98 61 chr3 145907909 145907929 -81616649 + MER104 DNA Tc2 44 62 -1836 2106 82 0 78 chr3 145907929 145908259 -81616319 + AluSx SINE Alu 1 306 0 317 212 98 61 chr3 145908259 145908369 -81616209 + MER104 DNA Tc2 62 180 0 474 298 252 17 chr3 145908384 145908553 -81616025 + L2 LINE L2 1942 2070 -1244 2383 94 0 7 chr3 145908553 145908851 -81615727 - AluSg SINE Alu -14 296 1 474 298 252 17 chr3 145908851 145909221 -81615357 + L2 LINE L2 2070 2608 -706 1598 146 88 15 chr3 145909434 145909708 -81614870 + AluJb SINE Alu 1 294 -18 282 337 140 11 chr3 145911034 145911212 -81613366 + MIR SINE MIR 50 250 -12 1875 157 10 14 chr3 145912559 145912852 -81611726 - AluJo SINE Alu -20 292 1 2176 88 63 0 chr3 145912852 145913135 -81611443 - AluSg SINE Alu -7 303 2 260 314 155 17 chr3 145913624 145914135 -81610443 - L2 LINE L2 -3 3310 2699 180 280 60 0 chr3 145917025 145917075 -81607503 + MIR SINE MIR 117 169 -93 851 217 70 89 chr3 145917556 145917915 -81606663 + L1MC5 LINE L1 6704 7055 -906 * 1255 256 63 33 chr3 145917887 145918437 -81606141 + L1MC5 LINE L1 7296 7867 -94 1728 189 64 11 chr3 145918437 145918813 -81605765 + MSTD LTR MaLR 1 396 0 1255 256 63 33 chr3 145918813 145918860 -81605718 + L1MC5 LINE L1 7867 7911 -50 455 282 233 5 chr3 145918951 145919153 -81605425 + MIR SINE MIR 4 251 -11 811 256 201 20 chr3 145919191 145919585 -81604993 + LTR40c LTR ERVL 1 465 0 339 242 268 13 chr3 145919594 145919747 -81604831 - MIR SINE MIR -51 211 20 342 321 208 0 chr3 145920067 145920226 -81604352 - MIR SINE MIR -48 214 23 463 320 84 0 chr3 145920329 145920532 -81604046 - Charlie8 DNA MER1_type -2128 289 70 2923 6 0 3 chr3 145920552 145920864 -81603714 + AluYa5 SINE Alu 1 311 0 295 239 128 43 chr3 145921512 145921629 -81602949 + L2 LINE L2 3145 3271 -1 208 268 206 0 chr3 145922168 145922265 -81602313 - L2 LINE L2 0 3272 3156 2443 92 10 0 chr3 145922405 145922710 -81601868 + AluSx SINE Alu 1 308 -4 708 144 23 30 chr3 145922944 145923076 -81601502 + FLAM_C SINE Alu 3 133 0 363 222 167 0 chr3 145924421 145924529 -81600049 + MIR SINE MIR 22 147 -115 274 316 202 18 chr3 145924657 145924875 -81599703 + MIR SINE MIR 1 258 -4 231 191 59 15 chr3 145924925 145924993 -81599585 - LTR16A1 LTR ERVL -98 359 289 366 244 106 8 chr3 145925439 145925562 -81599016 - Charlie8 DNA MER1_type -2242 175 41 229 286 136 14 chr3 145926548 145926688 -81597890 + MIR SINE MIR 57 213 -49 2374 98 3 0 chr3 145926810 145927115 -81597463 + AluSp SINE Alu 1 306 -7 1775 170 67 3 chr3 145928104 145928461 -81596117 + L1MB3 LINE L1 5762 6141 -42 1722 158 21 0 chr3 145928461 145928590 -81595988 + AluJo SINE Alu 1 126 -196 2283 97 0 10 chr3 145928590 145928900 -81595678 + AluSc SINE Alu 1 307 -2 1722 158 21 0 chr3 145928900 145929086 -81595492 + AluJo SINE Alu 126 322 0 719 108 217 0 chr3 145929089 145929229 -81595349 + AluSq SINE Alu 137 302 0 240 63 0 159 chr3 145929229 145929252 -81595326 + L1MB2 LINE L1 6118 6143 -28 2125 91 42 0 chr3 145929252 145929539 -81595039 + AluSc SINE Alu 1 299 -10 240 63 0 159 chr3 145929539 145929578 -81595000 + L1MB2 LINE L1 6143 6170 -1 195 327 164 22 chr3 145929948 145930110 -81594468 - MIR SINE MIR -65 143 2 2490 208 100 23 chr3 145930365 145930884 -81593694 + L1MB7 LINE L1 5112 5590 -594 1939 114 4 21 chr3 145930884 145931165 -81593413 + AluSx SINE Alu 1 276 -36 228 35 0 0 chr3 145931167 145931196 -81593382 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2490 208 100 23 chr3 145931196 145931666 -81592912 + L1MB7 LINE L1 5590 6179 -5 2096 118 0 3 chr3 145932248 145932544 -81592034 - AluSq SINE Alu -10 303 9 185 274 39 0 chr3 145932569 145932620 -81591958 + L2 LINE L2 3255 3307 -6 294 225 14 0 chr3 145933342 145933413 -81591165 + L2 LINE L2 2898 2969 -303 188 244 0 0 chr3 145933806 145933847 -81590731 + L2 LINE L2 3272 3312 -1 2389 71 0 0 chr3 145934444 145934739 -81589839 + AluSg SINE Alu 1 295 -15 238 323 84 26 chr3 145934828 145934983 -81589595 - L2 LINE L2 -199 3073 2910 475 286 138 100 chr3 145935031 145935420 -81589158 - L2 LINE L2 -464 2850 2478 1937 113 24 7 chr3 145935420 145935712 -81588866 - AluSx SINE Alu -14 298 2 475 286 138 100 chr3 145935712 145936095 -81588483 - L2 LINE L2 -836 2478 2048 326 320 198 18 chr3 145936373 145936595 -81587983 + MIR SINE MIR 1 262 0 338 244 106 8 chr3 145937155 145937278 -81587300 - Charlie8 DNA MER1_type -2242 175 41 256 286 136 14 chr3 145938264 145938404 -81586174 + MIR SINE MIR 57 213 -49 2250 99 3 0 chr3 145938526 145938830 -81585748 + AluSp SINE Alu 1 305 -8 1656 171 67 3 chr3 145939820 145940177 -81584401 + L1MB3 LINE L1 5762 6141 -42 1722 158 21 0 chr3 145940177 145940306 -81584272 + AluJo SINE Alu 1 126 -196 2113 112 0 16 chr3 145940306 145940618 -81583960 + AluSc SINE Alu 1 307 -2 1722 158 21 0 chr3 145940618 145940804 -81583774 + AluJo SINE Alu 126 322 0 719 108 217 0 chr3 145940807 145940947 -81583631 + AluSq SINE Alu 137 302 0 240 63 0 159 chr3 145940947 145940970 -81583608 + L1MB2 LINE L1 6118 6143 -28 2125 91 42 0 chr3 145940970 145941257 -81583321 + AluSc SINE Alu 1 299 -10 240 63 0 159 chr3 145941257 145941296 -81583282 + L1MB2 LINE L1 6143 6170 -1 195 326 177 20 chr3 145941665 145941812 -81582766 - MIR SINE MIR -91 171 2 1387 179 151 9 chr3 145942083 145942599 -81581979 + L1M4 LINE L1 5112 5686 -480 2223 102 3 0 chr3 145942602 145942897 -81581681 + AluSp SINE Alu 1 296 -17 1071 273 80 29 chr3 145942897 145943363 -81581215 - MLT1F1 LTR MaLR -30 537 41 395 255 116 1 chr3 145943764 145943999 -81580579 + MLT1F1 LTR MaLR 5 304 -263 232 303 35 28 chr3 145944051 145944193 -81580385 - MLT1J LTR MaLR -104 407 265 2117 304 79 20 chr3 145944343 145945542 -81579036 - HERVL LTR ERVL -2207 3447 2113 203 350 60 0 chr3 145945738 145945838 -81578740 - L2 LINE L2 0 3313 3208 1967 71 50 62 chr3 145945975 145946298 -81578280 + MER48 LTR ERV1 4 322 -65 2730 13 0 6 chr3 145946298 145946614 -81577964 + AluYb8 SINE Alu 1 314 -4 2191 75 41 85 chr3 145946716 145947028 -81577550 + MER48 LTR ERV1 16 309 -78 2876 6 0 0 chr3 145947028 145947345 -81577233 + AluYb8 SINE Alu 1 317 -1 2191 75 41 85 chr3 145947345 145947421 -81577157 + MER48 LTR ERV1 309 387 0 434 286 117 0 chr3 145947424 145947595 -81576983 + MLT1I LTR MaLR 4 194 -215 2076 115 3 3 chr3 145948052 145948348 -81576230 + AluSg SINE Alu 6 301 -9 433 243 14 91 chr3 145948348 145948558 -81576020 - LTR33 LTR ERVL 0 521 328 787 256 84 13 chr3 145948831 145949069 -81575509 + MIR SINE MIR 8 262 0 21 21 0 64 chr3 145949193 145949240 -81575338 + AT_rich Low_complexity Low_complexity 1 44 0 2112 129 3 3 chr3 145949252 145949546 -81575032 - AluSx SINE Alu -17 295 2 1979 141 0 13 chr3 145949664 145949976 -81574602 - AluJb SINE Alu -4 308 1 328 282 27 7 chr3 145949983 145950132 -81574446 - L1 LINE L1 -1112 5034 4883 1778 152 20 0 chr3 145950146 145950443 -81574135 - AluSx SINE Alu -9 303 1 208 208 0 38 chr3 145950645 145950698 -81573880 + CT-rich Low_complexity Low_complexity 5 55 0 295 366 24 0 chr3 145951219 145951342 -81573236 - MIR3 SINE MIR -45 163 38 235 379 20 26 chr3 145951345 145951498 -81573080 + L2 LINE L2 2904 3055 -217 401 293 127 44 chr3 145951510 145951691 -81572887 + MER91A DNA MER1_type 1 196 0 440 310 111 19 chr3 145952121 145952337 -81572241 - MIR SINE MIR -6 256 21 2183 104 0 10 chr3 145952425 145952723 -81571855 - AluSg SINE Alu -15 295 1 465 270 17 37 chr3 145952734 145952895 -81571683 - MIR SINE MIR -60 148 43 314 350 35 0 chr3 145953096 145953239 -81571339 + MIR3 SINE MIR 58 205 -3 348 292 55 52 chr3 145953526 145953872 -81570706 - MLT1K LTR MaLR -15 573 227 282 306 89 61 chr3 145954060 145954240 -81570338 - MIR SINE MIR -56 206 22 427 256 120 8 chr3 145954525 145954658 -81569920 - L1ME4a LINE L1 0 6121 5974 953 138 63 0 chr3 145954660 145954819 -81569759 - AluSg/x SINE Alu -16 294 126 2180 123 3 0 chr3 145954821 145955129 -81569449 - AluSx SINE Alu -3 309 1 709 388 97 15 chr3 145955129 145955678 -81568900 - L1ME4a LINE L1 -140 5981 5388 2139 120 0 0 chr3 145955693 145955985 -81568593 + AluSx SINE Alu 1 292 -20 217 384 92 32 chr3 145956071 145956482 -81568096 + L3 LINE CR1 514 949 -628 202 143 24 0 chr3 145956674 145956716 -81567862 + T-rich Low_complexity Low_complexity 6 48 0 21 57 0 0 chr3 145956990 145957025 -81567553 + AT_rich Low_complexity Low_complexity 1 35 0 232 308 0 0 chr3 145957739 145957791 -81566787 - L2 LINE L2 -18 3295 3244 209 295 197 16 chr3 145957787 145957909 -81566669 - MIR SINE MIR 0 262 119 * 203 309 241 0 chr3 145959174 145959336 -81565242 + MIR SINE MIR 58 258 -4 426 314 48 0 chr3 145959766 145959890 -81564688 + L2 LINE L2 3184 3313 0 21 0 0 0 chr3 145959890 145959911 -81564667 + AT_rich Low_complexity Low_complexity 1 21 0 192 231 0 0 chr3 145959992 145960044 -81564534 + (TA)n Simple_repeat Simple_repeat 2 53 0 306 311 0 0 chr3 145960081 145960258 -81564320 + (TG)n Simple_repeat Simple_repeat 1 177 0 298 238 83 83 chr3 145961549 145961730 -81562848 + MER5A DNA MER1_type 4 184 -5 470 296 70 0 chr3 145962633 145962775 -81561803 + MIR SINE MIR 111 262 0 443 284 35 20 chr3 145962938 145963135 -81561443 + MLT1K LTR MaLR 84 283 -305 372 299 125 27 chr3 145963426 145963650 -81560928 - MIR SINE MIR 0 262 17 190 195 98 0 chr3 145963780 145963821 -81560757 + L2 LINE L2 3265 3309 -4 864 261 116 6 chr3 145964607 145964944 -81559634 + MLT1K LTR MaLR 191 564 -24 196 264 368 0 chr3 145965691 145965797 -81558781 + MIR SINE MIR 8 152 -110 264 297 97 0 chr3 145966505 145966650 -81557928 + L1ME3A LINE L1 5759 5917 -245 317 231 0 0 chr3 145966730 145966795 -81557783 + L1ME3A LINE L1 6057 6121 -49 2202 100 3 31 chr3 145966846 145967166 -81557412 + AluSx SINE Alu 1 311 -1 948 133 0 0 chr3 145967499 145967634 -81556944 + AluJo SINE Alu 1 135 -177 2162 107 0 3 chr3 145967634 145967934 -81556644 + AluSx SINE Alu 1 299 -13 2224 100 0 34 chr3 145967934 145968077 -81556501 + AluSp SINE Alu 1 147 -166 2225 93 3 7 chr3 145968077 145968379 -81556199 + AluSp SINE Alu 1 301 -12 2224 100 0 34 chr3 145968379 145968556 -81556022 + AluSp SINE Alu 147 310 -3 1941 142 0 28 chr3 145968662 145968979 -81555599 + AluJo SINE Alu 5 312 0 516 274 55 0 chr3 145969051 145969215 -81555363 + MLT1J LTR MaLR 5 177 -334 497 333 39 5 chr3 145969390 145969597 -81554981 + MLT1J LTR MaLR 237 450 -61 594 312 186 24 chr3 145969673 145970194 -81554384 - L2 LINE L2 -280 3033 2429 236 274 60 43 chr3 145970235 145970352 -81554226 + MLT1L LTR MaLR 41 159 -456 269 154 19 0 chr3 145970431 145970483 -81554095 + MER20B DNA MER1_type 103 155 -628 1820 166 0 44 chr3 145970840 145971160 -81553418 - AluSx SINE Alu -6 306 1 852 313 65 44 chr3 145971413 145971981 -81552597 + MLT1K LTR MaLR 9 588 0 365 316 171 0 chr3 145971981 145972133 -81552445 + MIR SINE MIR 29 206 -56 1150 75 0 0 chr3 145972172 145972319 -81552259 - AluSg/x SINE Alu -6 306 160 215 237 356 0 chr3 145972502 145972620 -81551958 - MIR SINE MIR -88 174 15 318 233 212 48 chr3 145972700 145972846 -81551732 - MER5A DNA MER1_type -6 183 14 2355 99 0 0 chr3 145972920 145973222 -81551356 - AluSx SINE Alu -10 302 1 383 293 36 21 chr3 145973246 145973386 -81551192 - MIR SINE MIR -19 243 102 28 0 0 0 chr3 145974936 145974964 -81549614 + GC_rich Low_complexity Low_complexity 1 28 0 401 288 59 0 chr3 145975796 145975914 -81548664 - MIR SINE MIR -79 183 59 193 368 44 9 chr3 145975988 145976102 -81548476 + L2 LINE L2 2837 2954 -318 434 286 117 0 chr3 145976619 145976790 -81547788 - MLT1I LTR MaLR -215 194 4 556 66 0 0 chr3 145976793 145976869 -81547709 - MER48 LTR ERV1 0 387 312 980 141 0 5 chr3 145976869 145977068 -81547510 - AluYb8 SINE Alu -1 317 120 183 42 0 0 chr3 146027205 146027229 -81497349 + (TG)n Simple_repeat Simple_repeat 1 24 0 288 0 0 0 chr3 146027260 146027292 -81497286 + (TG)n Simple_repeat Simple_repeat 2 33 0 296 303 61 0 chr3 146027790 146027889 -81496689 + MIR SINE MIR 81 185 -77 251 286 39 60 chr3 146028201 146028383 -81496195 - L1MC4a LINE L1 -1754 6054 5877 339 65 0 0 chr3 146028458 146028504 -81496074 + (TTCA)n Simple_repeat Simple_repeat 3 48 0 204 245 41 0 chr3 146028504 146028553 -81496025 - L2 LINE L2 -26 3287 3237 810 283 137 29 chr3 146028613 146028924 -81495654 - L1MC4a LINE L1 -1963 5845 5569 306 0 0 0 chr3 146028924 146028958 -81495620 + (CA)n Simple_repeat Simple_repeat 2 35 0 810 283 137 29 chr3 146028958 146029173 -81495405 - L1MC4a LINE L1 -2239 5569 5262 833 241 60 37 chr3 146029179 146029395 -81495183 + MER58A DNA MER1_type 1 221 -3 2170 101 3 49 chr3 146029501 146029809 -81494769 + AluSc SINE Alu 1 294 -15 2121 118 0 34 chr3 146029923 146030244 -81494334 - AluJb SINE Alu -2 310 1 231 241 0 0 chr3 146030390 146030448 -81494130 - MIR SINE MIR -96 166 109 597 179 0 53 chr3 146030823 146031013 -81493565 + G-rich Low_complexity Low_complexity 1 180 0 278 272 0 41 chr3 146031169 146031316 -81493262 + (CCCCAG)n Simple_repeat Simple_repeat 1 141 0 193 303 53 0 chr3 146031575 146031707 -81492871 + L2 LINE L2 2835 2973 -299 186 200 0 0 chr3 146032099 146032129 -81492449 - L2 LINE L2 -17 3255 3226 * 498 262 113 6 chr3 146032116 146032284 -81492294 - MIR SINE MIR -40 222 37 204 141 218 51 chr3 146032355 146032433 -81492145 - MIR SINE MIR -71 137 47 268 275 53 38 chr3 146032930 146033061 -81491517 - Charlie8 DNA MER1_type -2257 160 28 501 253 39 56 chr3 146033365 146033543 -81491035 + L2 LINE L2 2893 3067 -246 842 271 135 15 chr3 146034790 146035326 -81489252 + L2 LINE L2 2462 3061 -252 1354 123 9 6 chr3 146035327 146035667 -81488911 - MER57B LTR ERV1 0 434 1 190 328 66 0 chr3 146035778 146035839 -81488739 + L2 LINE L2 3205 3269 -3 194 152 0 22 chr3 146036657 146036703 -81487875 + (TCTG)n Simple_repeat Simple_repeat 1 45 0 196 219 0 0 chr3 146036767 146036808 -81487770 - MIR3 SINE MIR -54 154 114 381 338 40 4 chr3 146037495 146037577 -81487001 + L2 LINE L2 2459 2537 -777 1938 149 10 10 chr3 146037577 146037872 -81486706 - AluJo SINE Alu -17 295 1 381 338 40 4 chr3 146037872 146038014 -81486564 + L2 LINE L2 2537 2691 -623 196 219 62 0 chr3 146038107 146038171 -81486407 + L2 LINE L2 2850 2917 -355 1442 218 67 6 chr3 146038212 146038580 -81485998 - MLT2D LTR ERVL -21 533 1 380 233 114 26 chr3 146038737 146038930 -81485648 + LTR16A LTR ERVL 240 449 -1 531 276 26 0 chr3 146039276 146039432 -81485146 + L1MD2 LINE L1 6190 6349 -10 196 125 0 0 chr3 146039663 146039695 -81484883 - L2 LINE L2 0 3313 3282 191 353 49 0 chr3 146040198 146040300 -81484278 + L2 LINE L2 3176 3282 -31 295 190 25 114 chr3 146040583 146040662 -81483916 - L2 LINE L2 -37 3276 3205 * 632 262 24 12 chr3 146040660 146040828 -81483750 + MIR SINE MIR 93 262 0 183 316 91 50 chr3 146040831 146041214 -81483364 - L2 LINE L2 -103 3210 2812 283 264 57 9 chr3 146043302 146043408 -81481170 + Charlie7 DNA MER1_type 58 168 -2444 888 260 40 17 chr3 146043515 146043811 -81480767 + Charlie7 DNA MER1_type 322 624 -1988 1364 270 133 0 chr3 146044105 146044602 -81479976 - L1MD3 LINE L1 -8 7987 7425 1166 65 0 0 chr3 146045310 146045449 -81479129 + AluSg/x SINE Alu 166 304 -6 694 226 156 38 chr3 146045512 146045800 -81478778 - MLT1G LTR MaLR -18 572 251 2003 180 65 5 chr3 146045987 146046404 -81478174 + MSTB2 LTR MaLR 16 457 0 242 284 37 0 chr3 146046404 146046474 -81478104 - MLT1G LTR MaLR -522 73 1 4265 211 68 60 chr3 146047026 146047677 -81476901 - L1MDa LINE L1 -4126 2414 1770 2210 81 0 0 chr3 146047677 146047949 -81476629 - AluY SINE Alu -39 272 1 2252 124 0 0 chr3 146047951 146048258 -81476320 - AluSx SINE Alu -5 307 1 4265 211 68 60 chr3 146048258 146049025 -81475553 - L1MDa LINE L1 -4770 1770 982 1391 253 82 18 chr3 146049026 146049525 -81475053 - L1MDa LINE L1 -5991 549 19 214 200 45 124 chr3 146050515 146050643 -81473935 - MIR SINE MIR -63 145 20 1077 244 84 0 chr3 146050646 146050920 -81473658 - MLT1J LTR MaLR -207 304 8 206 354 89 0 chr3 146051086 146051165 -81473413 - MIR SINE MIR -3 259 174 799 236 93 66 chr3 146051207 146051578 -81473000 - LTR16A LTR ERVL -1 456 70 213 250 69 42 chr3 146051644 146051716 -81472862 - MIR SINE MIR -169 93 20 828 316 66 37 chr3 146051831 146052316 -81472262 + L2 LINE L2 2815 3313 0 746 161 75 23 chr3 146052578 146052752 -81471826 - MLT1B LTR MaLR -121 269 87 2520 199 74 20 chr3 146052753 146053345 -81471233 - MER44D DNA MER2_type 0 705 82 1093 128 153 35 chr3 146053345 146053548 -81471030 - AluJo SINE Alu 0 312 86 485 189 11 0 chr3 146053548 146053638 -81470940 - MER44D DNA MER2_type -614 91 1 303 208 56 0 chr3 146053639 146053711 -81470867 - MLT1B LTR MaLR -304 86 11 1208 270 38 53 chr3 146054371 146054972 -81469606 + L1ME4a LINE L1 5319 5910 -211 2449 155 56 17 chr3 146055419 146055902 -81468676 - L1MB2 LINE L1 -2 6169 5668 3356 108 38 51 chr3 146056821 146057072 -81467506 - Tigger3(Golem) DNA MER2_type 0 3028 2775 2181 127 0 25 chr3 146057072 146057387 -81467191 + AluSx SINE Alu 1 307 -5 3356 108 38 51 chr3 146057387 146057747 -81466831 - Tigger3(Golem) DNA MER2_type -253 2775 2425 666 194 134 0 chr3 146057747 146057881 -81466697 - AluJb SINE Alu 0 312 161 2209 95 0 14 chr3 146058588 146058873 -81465705 + AluSq SINE Alu 1 281 -32 313 223 11 21 chr3 146059028 146059122 -81465456 - LTR67 LTR ERVL -5 552 460 249 220 0 0 chr3 146059614 146059664 -81464914 - LTR67 LTR ERVL -494 63 14 19176 48 1 0 chr3 146060995 146064144 -81460434 - L1PA5 LINE L1 -2 6152 3003 2045 149 3 0 chr3 146064172 146064468 -81460110 + AluJo SINE Alu 1 297 -15 379 270 67 0 chr3 146064474 146064563 -81460015 + L1MC4 LINE L1 6609 6703 -1339 311 293 0 75 chr3 146064477 146064583 -81459995 - L1MC4 LINE L1 -1337 6705 6608 * 574 207 150 10 chr3 146064601 146064794 -81459784 + L1ME4a LINE L1 5902 6121 0 181 231 19 19 chr3 146064906 146064958 -81459620 + L2 LINE L2 3262 3313 0 2476 84 0 0 chr3 146065175 146065474 -81459104 - AluSq SINE Alu -14 299 1 2600 182 32 11 chr3 146065566 146066034 -81458544 - MER66A LTR ERV1 0 478 1 238 296 65 53 chr3 146066151 146066320 -81458258 - L1ME3 LINE L1 -31 6131 5961 2150 249 30 37 chr3 146066378 146067200 -81457378 - L1ME3 LINE L1 -208 5962 5150 2382 98 5 53 chr3 146067251 146067479 -81457099 - MSTC LTR MaLR -4 424 220 419 91 212 0 chr3 146067479 146067545 -81457033 + MADE1 DNA Mariner 1 80 0 2382 98 5 53 chr3 146067545 146067693 -81456885 - MSTC LTR MaLR -208 220 66 1247 162 105 60 chr3 146067695 146068179 -81456399 + LTR49 LTR ERV1 1 736 -51 507 66 13 2 chr3 146068218 146068294 -81456284 - MSTC LTR MaLR -363 65 1 1438 272 83 36 chr3 146068338 146070127 -81454451 - L1ME3 LINE L1 -990 5156 3213 2020 113 8 0 chr3 146070127 146070393 -81454185 - AluSq SINE Alu -45 268 1 1438 272 83 36 chr3 146070393 146070500 -81454078 - L1ME3 LINE L1 -2933 3213 3112 * 1700 202 7 38 chr3 146070495 146070941 -81453637 - L1MEc LINE L1 -1395 5562 5131 600 169 30 42 chr3 146071129 146071295 -81453283 + L1MC3 LINE L1 7622 7785 0 2049 141 7 0 chr3 146071304 146071595 -81452983 - AluSx SINE Alu -18 294 2 7246 216 91 26 chr3 146071595 146071691 -81452887 - L1MEc LINE L1 -1812 5145 5057 2100 149 3 0 chr3 146071691 146071999 -81452579 - AluSx SINE Alu -1 311 3 7246 216 91 26 chr3 146071999 146073721 -81450857 - L1MEc LINE L1 -1900 5057 3165 2599 61 0 0 chr3 146073721 146074032 -81450546 - AluY SINE Alu 0 311 1 7246 216 91 26 chr3 146074032 146074617 -81449961 - L1MEc LINE L1 -3792 3165 2619 992 176 6 0 chr3 146074779 146074938 -81449640 - FRAM SINE Alu -18 158 1 1609 260 80 53 chr3 146074946 146075202 -81449376 - L1MEc LINE L1 -4491 2468 2220 1794 176 7 0 chr3 146075202 146075486 -81449092 + AluSx SINE Alu 1 286 -26 1609 260 80 53 chr3 146075486 146076314 -81448264 - L1MEc LINE L1 -4739 2220 1355 316 214 71 71 chr3 146076330 146076456 -81448122 - L1MEc LINE L1 -5471 1388 1263 * 794 314 81 9 chr3 146076447 146076769 -81447809 - L1MEc LINE L1 -6412 447 103 744 308 58 8 chr3 146077009 146077489 -81447089 - L1MDa LINE L1 -4576 2546 2043 189 0 0 0 chr3 146077489 146077510 -81447068 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 626 233 26 0 chr3 146077510 146077626 -81446952 - FLAM_C SINE Alu -23 120 2 303 272 55 18 chr3 146077626 146077833 -81446745 - L1MDa LINE L1 -4920 2011 1790 1403 240 48 21 chr3 146077835 146078312 -81446266 - MER119 DNA MER1_type 0 583 1 373 315 11 30 chr3 146078313 146078580 -81445998 - L1MDa LINE L1 -4955 1468 1350 213 211 0 0 chr3 146078593 146078650 -81445928 + (ATG)n Simple_repeat Simple_repeat 3 59 0 2130 110 3 0 chr3 146079639 146079929 -81444649 - AluSp SINE Alu -22 291 1 360 299 0 75 chr3 146080175 146080322 -81444256 - MER5B DNA MER1_type -42 136 1 1294 265 77 55 chr3 146080569 146081151 -81443427 + MLT1G1 LTR MaLR 1 595 0 6924 177 194 37 chr3 146081151 146082666 -81441912 - MER52A LTR ERV1 -2 1753 1 345 321 53 8 chr3 146082684 146082815 -81441763 - L2 LINE L2 -2 3270 3134 1415 246 138 29 chr3 146082850 146083184 -81441394 + MLT1J LTR MaLR 1 297 -214 2723 139 42 0 chr3 146083184 146083593 -81440985 + MSTB LTR MaLR 1 426 0 9549 175 17 20 chr3 146083593 146085249 -81439329 + MSTB-int LTR MaLR 1 1651 0 2557 139 57 0 chr3 146085249 146085652 -81438926 + MSTB LTR MaLR 1 426 0 1415 246 138 29 chr3 146085652 146085770 -81438808 + MLT1J LTR MaLR 296 505 -6 280 247 52 13 chr3 146085890 146085967 -81438611 - MLT1K LTR MaLR -322 266 187 490 313 94 9 chr3 146086218 146086451 -81438127 + MIR SINE MIR 4 256 -6 2361 161 17 46 chr3 146086723 146086851 -81437727 - L1MB3 LINE L1 -2 6181 6051 2016 125 0 7 chr3 146086851 146087146 -81437432 - AluSx SINE Alu -19 293 1 2361 161 17 46 chr3 146087146 146087423 -81437155 - L1MB3 LINE L1 -132 6051 5788 204 40 0 0 chr3 146087423 146087448 -81437130 + (CA)n Simple_repeat Simple_repeat 2 26 0 2361 161 17 46 chr3 146087448 146087502 -81437076 - L1MB3 LINE L1 -395 5788 5734 1089 145 6 0 chr3 146087518 146087690 -81436888 - FRAM SINE Alu -11 165 1 530 252 27 7 chr3 146088307 146088454 -81436124 + MIR SINE MIR 34 183 -79 873 230 73 0 chr3 146088454 146088645 -81435933 - MLT1B LTR MaLR -2 388 184 996 179 0 0 chr3 146088672 146088840 -81435738 - FRAM SINE Alu -2 174 7 681 210 68 12 chr3 146088843 146089005 -81435573 - MLT1B LTR MaLR -218 172 2 195 272 104 24 chr3 146089065 146089190 -81435388 + L2 LINE L2 2965 3099 -173 593 316 44 4 chr3 146089410 146089638 -81434940 + L2 LINE L2 2992 3228 -85 264 328 39 31 chr3 146089851 146089979 -81434599 - MIR3 SINE MIR -65 143 15 269 259 135 54 chr3 146090288 146090626 -81433952 - MLT1K LTR MaLR -3 585 181 372 277 0 0 chr3 146090747 146090924 -81433654 + (TG)n Simple_repeat Simple_repeat 2 178 0 718 268 185 38 chr3 146091075 146091673 -81432905 - L2 LINE L2 -313 3000 2326 848 274 72 22 chr3 146092154 146092516 -81432062 + MLT1K LTR MaLR 209 588 0 200 293 198 9 chr3 146093278 146093394 -81431184 - MIR SINE MIR -6 256 119 1215 259 61 35 chr3 146093399 146093824 -81430754 - MLT1J1 LTR MaLR -9 437 2 502 235 94 11 chr3 146094095 146094279 -81430299 + MIR SINE MIR 29 228 -34 191 176 30 49 chr3 146094330 146094391 -81430187 - MIR SINE MIR -69 139 94 811 259 127 37 chr3 146094883 146095348 -81429230 - L2 LINE L2 -5 3308 2802 381 298 149 10 chr3 146095402 146095691 -81428887 - L2 LINE L2 -71 3242 2914 270 246 18 61 chr3 146095839 146095953 -81428625 - MLT1K LTR MaLR -13 536 428 1166 268 42 21 chr3 146096215 146096435 -81428143 - MER58B DNA MER1_type -2081 339 108 1977 101 34 10 chr3 146096435 146096732 -81427846 - AluSc SINE Alu -5 304 1 1166 268 42 21 chr3 146096732 146096843 -81427735 - MER58B DNA MER1_type -2312 108 1 369 0 0 0 chr3 146097240 146097281 -81427297 + (TC)n Simple_repeat Simple_repeat 2 42 0 351 0 0 0 chr3 146097280 146097319 -81427259 + (TG)n Simple_repeat Simple_repeat 2 40 0 * 351 321 53 0 chr3 146097773 146097904 -81426674 - MIR SINE MIR -77 185 48 277 352 17 0 chr3 146098633 146098809 -81425769 - L1MC4 LINE L1 0 8042 7864 243 292 91 61 chr3 146100235 146100909 -81423669 - L1M4 LINE L1 -2887 3259 2566 239 338 150 19 chr3 146101043 146101250 -81423328 + MIR SINE MIR 22 255 -7 215 231 0 0 chr3 146101372 146101411 -81423167 + (CA)n Simple_repeat Simple_repeat 2 40 0 463 206 6 30 chr3 146101943 146102108 -81422470 + CT-rich Low_complexity Low_complexity 4 164 0 285 222 49 37 chr3 146102113 146102194 -81422384 - L2 LINE L2 -20 3293 3212 1324 306 74 15 chr3 146102249 146102833 -81421745 + L1ME3A LINE L1 5552 6169 -1 192 77 0 0 chr3 146102839 146102865 -81421713 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 183 42 0 0 chr3 146103242 146103266 -81421312 + (TG)n Simple_repeat Simple_repeat 1 24 0 288 0 0 0 chr3 146103297 146103329 -81421249 + (TG)n Simple_repeat Simple_repeat 2 33 0 693 312 164 20 chr3 146103938 146104525 -81420053 - L1MC4a LINE L1 -1884 5924 5254 400 272 139 81 chr3 146105023 146105369 -81419209 - LTR16A1 LTR ERVL -3 454 89 235 214 0 18 chr3 146106326 146106382 -81418196 + C-rich Low_complexity Low_complexity 6 60 0 357 224 75 37 chr3 146107621 146107728 -81416850 - MLT1K LTR MaLR -338 250 140 368 161 86 43 chr3 146108001 146108094 -81416484 - MLT1K LTR MaLR -2 586 490 898 269 159 21 chr3 146108222 146108556 -81416022 + LTR16A LTR ERVL 67 446 -4 687 276 72 69 chr3 146108570 146108903 -81415675 - MLT1K LTR MaLR -251 337 4 442 237 158 0 chr3 146111568 146111758 -81412820 + MIR SINE MIR 13 232 -30 344 323 83 42 chr3 146112092 146112309 -81412269 - MIR SINE MIR -9 253 28 240 284 74 0 chr3 146112813 146112894 -81411684 - MIR SINE MIR -71 191 105 664 178 66 7 chr3 146112894 146113046 -81411532 + LTR16C LTR ERVL 331 491 0 712 142 0 0 chr3 146114491 146114604 -81409974 + L1P LINE L1 1521 1633 -4513 811 258 9 39 chr3 146114794 146115023 -81409555 + MIR SINE MIR 1 222 -40 277 238 12 25 chr3 146115221 146115301 -81409277 + (CATATA)n Simple_repeat Simple_repeat 6 84 0 1085 260 27 7 chr3 146116196 146116488 -81408090 + MLT1H LTR MaLR 1 298 -251 194 288 51 0 chr3 146116652 146116711 -81407867 - MIR SINE MIR -113 149 88 505 279 66 0 chr3 146117402 146117538 -81407040 + L2 LINE L2 3123 3267 -5 192 290 72 0 chr3 146117728 146117797 -81406781 + MIR SINE MIR 157 230 -32 234 265 109 13 chr3 146118297 146118382 -81406196 + MIR SINE MIR 33 126 -82 543 365 29 23 chr3 146119939 146120283 -81404295 - L2 LINE L2 -5 3267 2922 697 253 83 33 chr3 146120283 146120524 -81404054 + MIR SINE MIR 4 256 -6 228 135 0 0 chr3 146120748 146120785 -81403793 + (TG)n Simple_repeat Simple_repeat 2 38 0 337 376 38 16 chr3 146121107 146121293 -81403285 - L1MD3 LINE L1 -2048 5947 5758 279 336 27 9 chr3 146123836 146123946 -81400632 - MIR SINE MIR -71 191 80 704 347 57 18 chr3 146124140 146124529 -81400049 - LTR16B LTR ERVL -1 463 60 277 268 109 44 chr3 146124582 146124738 -81399840 + MIR SINE MIR 4 164 -44 181 253 149 46 chr3 146125083 146125170 -81399408 + L2 LINE L2 3164 3259 -54 205 383 37 27 chr3 146125694 146125882 -81398696 - MIR SINE MIR -60 202 13 342 243 117 20 chr3 146126334 146126487 -81398091 + MIR3 SINE MIR 34 203 -5 288 0 0 0 chr3 146126518 146126550 -81398028 + (TG)n Simple_repeat Simple_repeat 2 33 0 306 0 0 0 chr3 146127310 146127344 -81397234 + (T)n Simple_repeat Simple_repeat 1 34 0 555 29 0 0 chr3 146127554 146127623 -81396955 + (CA)n Simple_repeat Simple_repeat 2 70 0 388 316 66 7 chr3 146128597 146128749 -81395829 - MIR SINE MIR -79 183 23 438 313 56 12 chr3 146129268 146129517 -81395061 - MIR SINE MIR -1 261 2 455 281 226 5 chr3 146129584 146129783 -81394795 + MIR SINE MIR 5 247 -15 1227 260 127 49 chr3 146130124 146130597 -81393981 + MLT1K LTR MaLR 69 578 -10 2596 181 26 4 chr3 146130847 146131316 -81393262 - MLT1D LTR MaLR 0 505 27 1627 182 10 21 chr3 146131322 146131613 -81392965 - AluJo SINE Alu -19 293 6 971 259 206 5 chr3 146132111 146132759 -81391819 + L2 LINE L2 2309 3084 -229 948 212 106 54 chr3 146132768 146133239 -81391339 + REP3 LTR ERV 3 540 -22 302 317 58 0 chr3 146133306 146133410 -81391168 + L2 LINE L2 3162 3271 -1 414 181 181 38 chr3 146133418 146133523 -81391055 - MIR SINE MIR -115 147 28 2340 92 0 10 chr3 146134052 146134357 -81390221 + AluSx SINE Alu 1 302 -10 504 276 26 13 chr3 146135330 146135486 -81389092 - MIR SINE MIR -60 202 45 218 283 0 0 chr3 146135642 146135695 -81388883 + T-rich Low_complexity Low_complexity 2 54 0 283 291 55 16 chr3 146136345 146136472 -81388106 - Charlie8 DNA MER1_type -2210 207 76 557 254 17 28 chr3 146136561 146136587 -81387991 - L1MC4a LINE L1 -1871 5937 5912 2226 130 73 27 chr3 146136587 146136996 -81387582 - MSTC LTR MaLR 0 428 1 557 254 17 28 chr3 146136996 146137146 -81387432 - L1MC4a LINE L1 -1896 5912 5763 762 194 69 56 chr3 146137146 146137362 -81387216 + MER20 DNA MER1_type 1 219 0 405 163 12 0 chr3 146137423 146137503 -81387075 + MER53 DNA DNA 109 189 0 1058 257 60 3 chr3 146137511 146137811 -81386767 - L1MC4a LINE L1 -2048 5760 5444 249 176 0 20 chr3 146137958 146138009 -81386569 - MIR SINE MIR -137 125 76 22 0 0 0 chr3 146138327 146138349 -81386229 + AT_rich Low_complexity Low_complexity 1 22 0 237 324 133 12 chr3 146138529 146138702 -81385876 - MIR SINE MIR -11 251 58 463 272 55 77 chr3 146138784 146139019 -81385559 + MLT1K LTR MaLR 69 298 -290 299 241 0 25 chr3 146139126 146139205 -81385373 + MLT1K LTR MaLR 442 518 -70 198 174 0 58 chr3 146139218 146139287 -81385291 + CT-rich Low_complexity Low_complexity 5 69 0 1124 120 0 0 chr3 146140094 146140272 -81384306 + FRAM SINE Alu 1 174 0 450 264 60 42 chr3 146140287 146140630 -81383948 - L1MC/D LINE L1 -652 5522 5175 231 254 27 45 chr3 146140906 146141016 -81383562 - L1MC/D LINE L1 -1458 4688 4581 897 156 7 0 chr3 146141424 146141559 -81383019 - AluJo SINE Alu -176 136 1 609 338 88 12 chr3 146141559 146142047 -81382531 - L1ME LINE L1 -387 6063 5539 486 272 70 77 chr3 146142056 146142380 -81382198 - L1ME LINE L1 -914 5512 5191 477 300 56 31 chr3 146142380 146142703 -81381875 - L1ME LINE L1 -2018 4408 4078 521 298 53 0 chr3 146142776 146142947 -81381631 - L1ME3A LINE L1 -80 6090 5911 316 347 16 11 chr3 146142942 146143183 -81381395 - L1ME LINE L1 -2351 4075 3834 * 26 0 0 0 chr3 146143183 146143209 -81381369 + AT_rich Low_complexity Low_complexity 1 26 0 32 0 0 0 chr3 146143222 146143254 -81381324 + AT_rich Low_complexity Low_complexity 1 32 0 10676 25 3 7 chr3 146143254 146145346 -81379232 - L1PA2 LINE L1 0 6155 4069 277 306 42 29 chr3 146145348 146145655 -81378923 - L1ME LINE L1 -2577 3849 3539 * 309 311 73 42 chr3 146145652 146146241 -81378337 - L1ME LINE L1 -3284 3142 2536 441 282 9 52 chr3 146146258 146146415 -81378163 - L1MCa LINE L1 -3933 2493 2341 640 269 64 60 chr3 146146668 146146951 -81377627 + MLT1K LTR MaLR 6 289 -241 1202 149 0 0 chr3 146147106 146147274 -81377304 + FRAM SINE Alu 1 168 -8 279 157 0 0 chr3 146147350 146147401 -81377177 + (CA)n Simple_repeat Simple_repeat 1 51 0 425 342 230 18 chr3 146147518 146147901 -81376677 - L1 LINE L1 -1532 4614 4151 674 313 33 37 chr3 146147982 146148442 -81376136 - L1 LINE L1 -2002 4144 3687 338 307 42 52 chr3 146148501 146148694 -81375884 + L1 LINE L1 2845 3035 -3111 629 317 32 18 chr3 146148988 146149483 -81375095 + L1M4 LINE L1 2758 3259 -2887 673 302 68 13 chr3 146149829 146150064 -81374514 + MLT1K LTR MaLR 341 588 0 319 223 136 19 chr3 146150707 146150810 -81373768 - L2 LINE L2 -1 3312 3198 738 248 182 19 chr3 146150817 146151245 -81373333 - L2 LINE L2 -345 2969 2472 251 250 0 0 chr3 146152515 146152575 -81372003 + MIR SINE MIR 100 159 -103 330 285 100 8 chr3 146153057 146153187 -81371391 - MLT1K LTR MaLR -233 355 214 225 0 0 0 chr3 146153324 146153349 -81371229 + (TG)n Simple_repeat Simple_repeat 1 25 0 409 259 150 77 chr3 146153727 146154106 -81370472 - L2 LINE L2 -9 3263 2857 369 324 87 21 chr3 146154323 146154564 -81370014 + L2 LINE L2 2986 3242 -30 231 172 16 47 chr3 146155001 146155065 -81369513 + GA-rich Low_complexity Low_complexity 3 64 0 473 240 0 6 chr3 146155079 146155250 -81369328 + GA-rich Low_complexity Low_complexity 1 170 0 185 387 28 9 chr3 146155336 146155442 -81369136 + MIR SINE MIR 49 156 -106 202 224 41 0 chr3 146156450 146156499 -81368079 - MIR SINE MIR -115 147 97 588 255 6 28 chr3 146157050 146157213 -81367365 + MIR SINE MIR 21 175 -63 1201 82 0 0 chr3 146157215 146157361 -81367217 + AluY SINE Alu 155 300 -11 294 225 38 12 chr3 146157361 146157441 -81367137 + MIR SINE MIR 167 248 -14 395 307 68 0 chr3 146159966 146160112 -81364466 + MIR SINE MIR 54 208 -54 363 296 83 8 chr3 146160374 146160506 -81364072 + L2 LINE L2 2638 2779 -535 195 286 0 0 chr3 146160636 146160692 -81363886 + L2 LINE L2 3006 3061 -252 265 270 146 0 chr3 146160911 146161000 -81363578 + MLT1L LTR MaLR 137 238 -377 4735 237 49 32 chr3 146161035 146162936 -81361642 - L1ME2 LINE L1 -9 6155 4214 1561 137 56 4 chr3 146162936 146163170 -81361408 - AluJb SINE Alu -20 292 47 4735 237 49 32 chr3 146163170 146163410 -81361168 - L1ME2 LINE L1 -1950 4214 3979 817 290 24 38 chr3 146163475 146163687 -81360891 + MLT1L LTR MaLR 327 535 -80 726 138 14 51 chr3 146163687 146163825 -81360753 + FLAM_C SINE Alu 1 133 0 817 290 24 38 chr3 146163825 146163905 -81360673 + MLT1L LTR MaLR 535 615 0 338 242 105 0 chr3 146163916 146164011 -81360567 + L2 LINE L2 3209 3313 0 191 161 129 39 chr3 146164784 146164867 -81359711 + MIR SINE MIR 6 103 -105 826 153 6 65 chr3 146164870 146165040 -81359538 - LTR1B LTR ERV1 0 826 667 1156 171 5 9 chr3 146165053 146165263 -81359315 - LTR1B LTR ERV1 -611 215 7 401 235 10 20 chr3 146165278 146165376 -81359202 + MIR SINE MIR 91 187 -75 8606 41 8 9 chr3 146166086 146167056 -81357522 + LTR5 LTR ERVK 1 969 0 236 190 35 17 chr3 146168126 146168184 -81356394 - LTR33A LTR ERVL -25 498 440 442 208 148 129 chr3 146168235 146168553 -81356025 - LTR33A LTR ERVL -194 329 6 287 273 48 91 chr3 146168764 146168951 -81355627 + MIR SINE MIR 45 223 -39 304 193 138 28 chr3 146169580 146169689 -81354889 - MIR SINE MIR -114 148 28 594 292 87 0 chr3 146170460 146170748 -81353830 + L2 LINE L2 2475 2787 -527 375 299 47 57 chr3 146171072 146171283 -81353295 + Charlie8 DNA MER1_type 37 245 -2172 451 255 107 10 chr3 146171928 146172124 -81352454 + LTR16A LTR ERVL 201 415 -35 399 311 44 33 chr3 146172288 146172518 -81352060 + MIR SINE MIR 33 259 -3 399 254 32 5 chr3 146172767 146172959 -81351619 - MER41E LTR ERV1 -3 509 226 417 292 134 5 chr3 146173732 146173941 -81350637 - MIR SINE MIR -7 255 20 491 324 158 12 chr3 146174636 146174889 -81349689 - L3 LINE CR1 -481 1096 807 3858 93 20 7 chr3 146175098 146175645 -81348933 + MER41A LTR ERV1 1 554 0 3913 113 19 44 chr3 146175730 146176368 -81348210 + MER41A-int LTR ERV1 1 622 -5324 2348 135 23 33 chr3 146176345 146176850 -81347728 + MER41A-int LTR ERV1 632 840 -4377 * 968 140 0 0 chr3 146176852 146177002 -81347576 + MER41A-int LTR ERV1 1868 2017 -3929 * 11342 104 55 29 chr3 146176994 146180292 -81344286 + MER41A-int LTR ERV1 2163 5944 -2 3710 121 5 5 chr3 146180292 146180846 -81343732 + MER41A LTR ERV1 1 554 0 1154 289 77 22 chr3 146180847 146181393 -81343185 - L1ME4a LINE L1 -34 6087 5512 819 134 70 21 chr3 146181395 146181537 -81343041 - FRAM SINE Alu -11 165 17 1502 173 72 17 chr3 146181554 146181901 -81342677 - MER47A DNA MER2_type 0 366 1 693 199 80 50 chr3 146182214 146182415 -81342163 + MIR SINE MIR 48 254 -8 1051 301 110 8 chr3 146183915 146184307 -81340271 - MLT1K LTR MaLR -16 572 141 598 230 265 21 chr3 146185458 146185704 -81338874 - MLT1G LTR MaLR -281 314 15 327 353 46 12 chr3 146186019 146186192 -81338386 + MIR SINE MIR 36 214 -48 306 73 0 0 chr3 146186559 146186600 -81337978 + (CCCCAG)n Simple_repeat Simple_repeat 3 43 0 212 158 0 0 chr3 146188401 146188439 -81336139 - L2 LINE L2 -219 3053 3016 194 308 0 0 chr3 146189017 146189082 -81335496 + L2 LINE L2 3235 3299 -14 222 364 33 0 chr3 146189145 146189266 -81335312 + L2 LINE L2 3138 3262 -10 2616 60 0 0 chr3 146189356 146189657 -81334921 + AluY SINE Alu 1 301 -10 268 218 63 103 chr3 146189906 146190080 -81334498 - MLT1H LTR MaLR -4 545 379 238 295 22 58 chr3 146190214 146190353 -81334225 - MLT1K LTR MaLR -415 134 1 21 0 0 0 chr3 146191539 146191560 -81333018 + AT_rich Low_complexity Low_complexity 1 21 0 1101 225 104 41 chr3 146191724 146192054 -81332524 - L1MB7 LINE L1 -2 6182 5816 2345 112 3 0 chr3 146192054 146192358 -81332220 - AluSp SINE Alu -8 305 1 1101 225 104 41 chr3 146192358 146192467 -81332111 - L1MB7 LINE L1 -368 5816 5715 233 152 43 0 chr3 146192863 146192909 -81331669 - MIR SINE MIR -108 154 107 262 304 62 0 chr3 146194122 146194234 -81330344 - L2 LINE L2 -5 3267 3149 307 309 124 81 chr3 146195638 146195745 -81328833 + MLT1K LTR MaLR 39 140 -448 428 0 19 0 chr3 146195745 146195797 -81328781 + (CA)n Simple_repeat Simple_repeat 1 53 0 307 309 124 81 chr3 146195797 146196107 -81328471 + MLT1K LTR MaLR 140 474 -114 276 330 91 0 chr3 146196310 146196519 -81328059 - L1M4 LINE L1 -1898 4248 4021 237 286 71 0 chr3 146196519 146196589 -81327989 - L2 LINE L2 -39 3274 3200 456 310 55 35 chr3 146196702 146197047 -81327531 - L1M4 LINE L1 -2095 4051 3700 1324 293 52 5 chr3 146197985 146198701 -81325877 - L1ME LINE L1 -389 5781 5040 1029 231 35 45 chr3 146198724 146199036 -81325542 + L2 LINE L2 3005 3313 0 1776 130 20 8 chr3 146200625 146200879 -81323699 - AluSx SINE Alu -55 257 1 457 62 12 25 chr3 146200979 146201060 -81323518 + AluYb8 SINE Alu 238 317 -1 185 400 12 0 chr3 146201185 146201270 -81323308 + L2 LINE L2 2965 3050 -222 981 258 124 31 chr3 146201342 146201593 -81322985 - MLT1J LTR MaLR -65 446 145 1660 216 43 0 chr3 146201593 146201940 -81322638 + MLT1A1 LTR MaLR 4 365 0 981 258 124 31 chr3 146201940 146202076 -81322502 - MLT1J LTR MaLR -366 145 23 250 324 58 43 chr3 146202151 146202290 -81322288 + L2 LINE L2 3173 3313 0 253 244 244 0 chr3 146202622 146202708 -81321870 - MER5A DNA MER1_type 0 189 83 254 148 130 0 chr3 146202713 146202767 -81321811 - MLT1K LTR MaLR -18 570 510 241 233 143 30 chr3 146203588 146203721 -81320857 + MER5A DNA MER1_type 7 154 -35 467 273 81 12 chr3 146204137 146204309 -81320269 + Charlie8 DNA MER1_type 4 187 -2230 274 259 194 9 chr3 146205473 146205581 -81318997 - MIR SINE MIR -63 145 18 256 265 24 42 chr3 146206475 146206673 -81317905 + (TCTCTG)n Simple_repeat Simple_repeat 1 194 0 396 246 109 0 chr3 146207672 146207782 -81316796 - MIR SINE MIR -43 219 98 1741 221 88 11 chr3 146208963 146209438 -81315140 + MER74A LTR ERVL 12 523 -35 693 314 105 7 chr3 146209488 146209937 -81314641 + LTR33 LTR ERVL 21 513 -8 493 235 0 0 chr3 146210174 146210289 -81314289 + MER113 DNA MER1_type? 2 116 -405 1083 228 30 37 chr3 146210320 146210618 -81313960 - L1ME1 LINE L1 -11 6155 5860 2262 120 10 0 chr3 146210630 146210931 -81313647 - AluSx SINE Alu -8 304 1 2836 225 40 40 chr3 146211097 146212002 -81312576 - L1ME1 LINE L1 -65 6101 5192 2058 162 3 0 chr3 146212002 146212310 -81312268 - AluJb SINE Alu -3 309 1 2836 225 40 40 chr3 146212310 146212367 -81312211 - L1ME1 LINE L1 -974 5192 5136 258 316 84 39 chr3 146212550 146212705 -81311873 - MLT1L LTR MaLR -145 470 309 428 247 192 0 chr3 146212714 146212860 -81311718 + MER96 DNA MER1_type? 1 174 -1 290 196 41 62 chr3 146212906 146213003 -81311575 - MLT1L LTR MaLR -347 268 174 3914 179 58 38 chr3 146213217 146214708 -81309870 + L1MB7 LINE L1 4652 6175 -9 302 284 147 5 chr3 146215517 146215721 -81308857 - LTR16A LTR ERVL -56 394 162 1717 189 10 0 chr3 146216235 146216526 -81308052 - AluJb SINE Alu -14 298 5 348 272 103 49 chr3 146217940 146218124 -81306454 + L2 LINE L2 1773 1966 -1348 1242 256 64 8 chr3 146218131 146218521 -81306057 - MLT1J LTR MaLR -38 473 62 190 321 87 41 chr3 146218632 146218850 -81305728 + L2 LINE L2 2118 2345 -969 1839 145 18 7 chr3 146218957 146219240 -81305338 - AluSx SINE Alu -18 294 9 252 303 81 0 chr3 146219577 146219676 -81304902 + L2 LINE L2 3196 3302 -11 228 270 110 0 chr3 146219918 146220018 -81304560 - L2 LINE L2 -38 3275 3165 1573 155 114 15 chr3 146220207 146220548 -81304030 + THE1C LTR MaLR 1 375 0 9599 113 27 43 chr3 146220548 146222154 -81302424 + THE1C-int LTR MaLR 1 1580 0 1816 117 111 12 chr3 146222154 146222495 -81302083 + THE1C LTR MaLR 1 375 0 219 376 18 0 chr3 146222626 146222735 -81301843 - L2 LINE L2 -74 3239 3129 1031 227 9 9 chr3 146222735 146222951 -81301627 + MER66B LTR ERV1 1 216 -270 1714 132 0 19 chr3 146223176 146223441 -81301137 + MER66B LTR ERV1 227 486 0 503 322 59 14 chr3 146224107 146224789 -81299789 - L1MC/D LINE L1 -726 5430 4783 236 331 85 16 chr3 146224844 146225231 -81299347 - L1MC/D LINE L1 -1573 4573 4151 1675 214 0 7 chr3 146225231 146225540 -81299038 - AluJo SINE Alu -5 307 1 236 331 85 16 chr3 146225540 146225587 -81298991 - L1MC/D LINE L1 -1995 4151 4109 716 213 19 43 chr3 146225801 146226012 -81298566 - MER3 DNA MER1_type -3 206 1 439 181 30 77 chr3 146226529 146226693 -81297885 + MLT1H1 LTR MaLR 391 617 -9 368 20 20 0 chr3 146226696 146226745 -81297833 + (TG)n Simple_repeat Simple_repeat 2 51 0 290 321 87 23 chr3 146227585 146227803 -81296775 - L2 LINE L2 -228 3085 2854 280 279 135 35 chr3 146228848 146228999 -81295579 + MIR SINE MIR 1 169 -63 3418 241 119 74 chr3 146229863 146230499 -81294079 - HAL1 LINE L1 -10 2497 1891 1660 164 3 40 chr3 146230499 146230823 -81293755 - AluSx SINE Alu 0 312 1 3418 241 119 74 chr3 146230823 146232322 -81292256 - HAL1 LINE L1 -616 1891 267 684 279 21 33 chr3 146232335 146232575 -81292003 - HAL1 LINE L1 -2270 237 1 1112 106 144 11 chr3 146232793 146232973 -81291605 - AluJo SINE Alu -23 289 86 381 22 0 0 chr3 146233104 146233150 -81291428 + (TTTTG)n Simple_repeat Simple_repeat 1 46 0 1776 102 68 15 chr3 146233150 146233415 -81291163 - AluSx SINE Alu -33 279 1 806 150 0 0 chr3 146233452 146233572 -81291006 - FLAM_C SINE Alu -10 123 4 1237 289 63 26 chr3 146233700 146234284 -81290294 + L1MC4 LINE L1 7170 7775 -267 1879 201 29 0 chr3 146234362 146234741 -81289837 + MLT1B LTR MaLR 1 390 0 432 271 11 39 chr3 146235653 146235834 -81288744 + MER69A DNA AcHobo 1 176 -1 1837 162 47 15 chr3 146236322 146236662 -81287916 + MLT1A1 LTR MaLR 3 353 -12 997 172 113 95 chr3 146236680 146237017 -81287561 - MER2 DNA MER2_type 0 344 2 270 258 0 0 chr3 146237071 146237137 -81287441 + MER113 DNA MER1_type? 455 520 -1 827 243 70 35 chr3 146237578 146238054 -81286524 - MLT1H LTR MaLR 0 549 1 314 281 86 29 chr3 146238710 146238849 -81285729 - MIR SINE MIR -96 166 20 517 211 0 27 chr3 146238949 146239134 -81285444 + (TG)n Simple_repeat Simple_repeat 1 180 0 301 175 0 44 chr3 146239155 146239269 -81285309 + (TG)n Simple_repeat Simple_repeat 2 110 0 258 107 0 89 chr3 146239275 146239331 -81285247 + MER4-int LTR ERV1 1112 1162 -5436 410 233 2 31 chr3 146239332 146239765 -81284813 + (TG)n Simple_repeat Simple_repeat 1 420 0 911 273 45 12 chr3 146240561 146240891 -81283687 - MER113 DNA MER1_type? -101 420 80 423 279 29 0 chr3 146241658 146241762 -81282816 + MLT1L LTR MaLR 132 238 -377 292 272 107 10 chr3 146241769 146241872 -81282706 + MLT1L LTR MaLR 350 462 -153 332 153 0 34 chr3 146241910 146241969 -81282609 + MLT1L LTR MaLR 557 613 -2 13069 220 51 32 chr3 146242443 146244762 -81279816 - L1MA9 LINE L1 -50 6150 3876 1983 130 7 0 chr3 146244762 146245061 -81279517 - AluSq SINE Alu -12 301 1 13069 220 51 32 chr3 146245061 146248912 -81275666 - L1MA9 LINE L1 -2324 3876 302 489 273 8 155 chr3 146249413 146249677 -81274901 + MIR SINE MIR 1 225 -37 524 291 91 43 chr3 146250264 146250518 -81274060 + L2 LINE L2 3043 3308 -5 267 103 0 0 chr3 146250690 146250729 -81273849 + (CA)n Simple_repeat Simple_repeat 2 40 0 433 179 27 80 chr3 146251196 146251308 -81273270 - MIR SINE MIR -142 120 15 980 263 119 45 chr3 146252383 146252877 -81271701 + MLT1H LTR MaLR 10 540 -9 236 289 0 53 chr3 146253271 146253385 -81271193 - L1ME LINE L1 -314 5856 5749 545 244 84 43 chr3 146253500 146253777 -81270801 - L1ME LINE L1 -587 5534 5257 534 217 161 44 chr3 146254344 146254593 -81269985 - LTR16A LTR ERVL -106 344 67 620 325 95 23 chr3 146254640 146255140 -81269438 + L2 LINE L2 2739 3284 -29 198 103 0 0 chr3 146255158 146255187 -81269391 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 1341 223 6 44 chr3 146255681 146256000 -81268578 + MLT2C1 LTR ERVL 40 346 -51 21 36 0 0 chr3 146256014 146256042 -81268536 + AT_rich Low_complexity Low_complexity 1 28 0 204 97 0 0 chr3 146256061 146256092 -81268486 + (TC)n Simple_repeat Simple_repeat 2 32 0 387 0 0 0 chr3 146256092 146256135 -81268443 + (CA)n Simple_repeat Simple_repeat 1 43 0 248 191 0 0 chr3 146256136 146256178 -81268400 + MLT2F LTR ERVL 622 663 0 1776 120 0 45 chr3 146258592 146258913 -81265665 - AluSx SINE Alu 0 310 3 1915 183 51 9 chr3 146259036 146259386 -81265192 - MLT1A1 LTR MaLR 0 365 1 252 0 0 0 chr3 146259575 146259603 -81264975 + (TGAA)n Simple_repeat Simple_repeat 4 31 0 394 289 35 18 chr3 146259853 146259982 -81264596 + MIR SINE MIR 30 159 -49 401 242 161 55 chr3 146260787 146261060 -81263518 - L1ME4a LINE L1 -4 6117 5816 393 287 35 21 chr3 146261540 146261683 -81262895 + MER5B DNA MER1_type 18 162 -16 311 248 248 0 chr3 146261736 146261837 -81262741 + MER5A DNA MER1_type 58 183 -6 2262 87 0 13 chr3 146262115 146262427 -81262151 + AluSg SINE Alu 1 308 -2 382 303 17 17 chr3 146262854 146263029 -81261549 + L1M4 LINE L1 3915 4089 -2057 332 324 60 17 chr3 146263702 146263914 -81260664 - L1MDa LINE L1 -904 1997 1765 267 242 48 0 chr3 146265860 146265922 -81258656 - MLT1A2 LTR MaLR -307 67 3 273 284 129 34 chr3 146268338 146268781 -81255797 + L1M4 LINE L1 4069 4553 -1593 * 5175 157 38 16 chr3 146268776 146269734 -81254844 + L1MC2 LINE L1 5357 6335 -9 * 5763 155 102 156 chr3 146269733 146271129 -81253449 + L1MC3 LINE L1 5813 7168 -617 329 231 67 19 chr3 146271129 146271233 -81253345 + MLT1F1 LTR MaLR 25 133 -434 5763 155 102 156 chr3 146271233 146271819 -81252759 + L1MC3 LINE L1 7168 7784 -1 352 336 73 39 chr3 146271823 146272055 -81252523 + L1M4 LINE L1 4552 4791 -1355 247 336 33 0 chr3 146272714 146272836 -81251742 - L1M4 LINE L1 -535 5643 5518 1280 159 56 4 chr3 146273068 146273300 -81251278 - L1PB4 LINE L1 -1 6155 5912 467 193 23 0 chr3 146274163 146274251 -81250327 + MER5B DNA MER1_type 89 178 0 601 250 75 6 chr3 146274265 146274425 -81250153 - MER5B DNA MER1_type -3 175 5 695 327 71 41 chr3 146274548 146275083 -81249495 - L1MEc LINE L1 -4569 1741 1191 242 114 0 0 chr3 146275125 146275169 -81249409 - L1MEc LINE L1 -5029 1090 1047 25 0 0 0 chr3 146275210 146275235 -81249343 + AT_rich Low_complexity Low_complexity 1 25 0 1230 163 75 52 chr3 146275235 146275487 -81249091 - AluJo SINE Alu -25 287 30 2514 35 3 16 chr3 146275507 146275826 -81248752 + AluYb8 SINE Alu 2 316 -2 309 292 69 82 chr3 146275839 146276072 -81248506 - L1MEc LINE L1 -5325 985 756 443 238 25 8 chr3 146276075 146276197 -81248381 + L1MC5 LINE L1 7701 7824 -137 366 324 102 39 chr3 146276205 146276615 -81247963 - L1MEc LINE L1 -5409 710 275 277 203 0 41 chr3 146276930 146277053 -81247525 + (CA)n Simple_repeat Simple_repeat 2 119 0 1757 132 17 10 chr3 146277178 146277474 -81247104 + AluSg SINE Alu 1 298 -12 1589 124 161 36 chr3 146278393 146278731 -81245847 + MSTB LTR MaLR 61 426 0 356 360 70 16 chr3 146278928 146279114 -81245464 - L1 LINE L1 -1075 5071 4876 455 282 130 53 chr3 146279525 146279627 -81244951 + L1M4 LINE L1 2916 3009 -3137 2152 107 0 0 chr3 146279627 146279916 -81244662 - AluSc SINE Alu -20 289 1 455 282 130 53 chr3 146279916 146280075 -81244503 + L1M4 LINE L1 3009 3197 -2949 630 234 79 32 chr3 146280088 146280366 -81244212 - L1M4 LINE L1 -3601 2545 2255 1556 238 32 27 chr3 146280382 146280773 -81243805 + MER21B LTR ERV1 471 852 -8 241 333 136 47 chr3 146281613 146281871 -81242707 - L2 LINE L2 -665 2649 2369 260 264 11 58 chr3 146282020 146282107 -81242471 + MIR SINE MIR 64 146 -116 359 371 18 24 chr3 146282988 146283158 -81241420 + MIR SINE MIR 29 197 -65 418 290 205 20 chr3 146283172 146283372 -81241206 + MIR SINE MIR 18 254 -8 213 39 0 0 chr3 146283798 146283824 -81240754 + (TTTC)n Simple_repeat Simple_repeat 2 27 0 5028 68 15 0 chr3 146283828 146284488 -81240090 - SVA Other Other -6 1380 711 798 81 27 0 chr3 146284865 146284976 -81239602 + L1MB1 LINE L1 6055 6168 0 380 71 18 0 chr3 146285132 146285188 -81239390 + (GAAA)n Simple_repeat Simple_repeat 2 58 0 647 246 63 60 chr3 146286762 146287079 -81237499 - MLT1A1 LTR MaLR -16 349 32 2484 37 0 3 chr3 146287608 146287908 -81236670 - AluY SINE Alu -12 299 1 1517 191 37 0 chr3 146288213 146288486 -81236092 - AluJb SINE Alu -29 283 1 29 0 0 0 chr3 146288551 146288580 -81235998 + AT_rich Low_complexity Low_complexity 1 29 0 2900 208 30 16 chr3 146288594 146289290 -81235288 - L1PA13 LINE L1 -175 5988 5283 960 251 75 81 chr3 146290445 146290951 -81233627 - MLT1J LTR MaLR -1 510 8 387 339 12 48 chr3 146291349 146291517 -81233061 - MER5B DNA MER1_type -1 177 16 7532 132 20 25 chr3 146291519 146293373 -81231205 - MER52C-int LTR ERV1 -5162 1929 2 4281 168 96 126 chr3 146293373 146294680 -81229898 - MER52C LTR ERV1 0 1278 12 268 310 19 25 chr3 146294926 146295084 -81229494 - L1M4 LINE L1 -3572 2810 2654 471 132 13 0 chr3 146295525 146295601 -81228977 - MER116 DNA Mariner -3 77 1 609 310 42 6 chr3 146295916 146296221 -81228357 - HAL1 LINE L1 -838 1905 1436 542 366 59 34 chr3 146296231 146296709 -81227869 + L1MEd LINE L1 444 933 -5186 935 190 11 0 chr3 146296719 146296893 -81227685 - Tigger7 DNA MER2_type -9 2478 2303 434 262 41 21 chr3 146297113 146297265 -81227313 - MLT1H1 LTR MaLR -1 554 422 986 302 50 5 chr3 146297308 146297689 -81226889 - L1ME3 LINE L1 -300 5862 5465 1695 264 70 62 chr3 146297777 146299045 -81225533 - L1ME3 LINE L1 -804 5342 4064 254 182 0 55 chr3 146299310 146299365 -81225213 + MER21B LTR ERV1 9 60 -803 2272 228 87 77 chr3 146299381 146300078 -81224500 + MER21B LTR ERV1 20 727 -136 2065 150 137 8 chr3 146300078 146300457 -81224121 - MSTA LTR MaLR 0 428 1 2272 228 87 77 chr3 146300457 146300541 -81224037 + MER21B LTR ERV1 727 809 -54 253 314 31 67 chr3 146300621 146300876 -81223702 + L2 LINE L2 2503 2748 -566 335 275 0 0 chr3 146301900 146301980 -81222598 - MIR SINE MIR -2 260 181 181 346 77 19 chr3 146302013 146302117 -81222461 - MIR3 SINE MIR -28 180 71 1049 224 102 37 chr3 146304824 146305146 -81219432 + MLT1B LTR MaLR 12 354 -36 309 51 0 0 chr3 146305146 146305185 -81219393 + (CA)n Simple_repeat Simple_repeat 2 40 0 226 212 99 91 chr3 146305318 146305439 -81219139 + MIR SINE MIR 46 171 -37 313 343 0 54 chr3 146306047 146306213 -81218365 + L1MEd LINE L1 2312 2468 -3661 308 258 57 57 chr3 146307124 146307248 -81217330 - L1MDa LINE L1 -5146 1394 1271 508 281 98 31 chr3 146307900 146308257 -81216321 - MLT1J LTR MaLR -85 426 3 201 200 60 0 chr3 146308852 146308902 -81215676 + L2 LINE L2 3206 3258 -14 207 291 91 18 chr3 146309541 146309651 -81214927 - L2 LINE L2 -223 3049 2932 2408 87 0 0 chr3 146311397 146311706 -81212872 - AluSc SINE Alu 0 309 1 186 150 0 0 chr3 146312235 146312275 -81212303 + (TAA)n Simple_repeat Simple_repeat 1 40 0 277 290 10 0 chr3 146313469 146313569 -81211009 + L1M4 LINE L1 4557 4657 -1489 2937 134 73 10 chr3 146313652 146314175 -81210403 + LTR38 LTR ERV1 1 556 0 10880 141 50 51 chr3 146314175 146315005 -81209573 + LTR38-int LTR ERV1 1 830 -2863 5215 172 72 31 chr3 146315005 146316233 -81208345 + LTR57-int LTR ERVL 318 1595 -3748 10880 141 50 51 chr3 146316233 146317115 -81207463 + LTR38-int LTR ERV1 830 3693 0 1995 145 3 0 chr3 146317130 146317441 -81207137 - AluSx SINE Alu 0 312 1 1170 148 13 25 chr3 146317525 146317761 -81206817 + LTR38-int LTR ERV1 3731 3963 -2635 259 299 84 9 chr3 146318317 146318424 -81206154 - MIR SINE MIR -35 227 113 246 250 0 92 chr3 146318429 146318505 -81206073 - L2 LINE L2 -68 3204 3136 267 292 90 35 chr3 146318613 146318757 -81205821 + MIR SINE MIR 103 254 -8 1544 254 128 66 chr3 146319062 146320448 -81204130 + HAL1 LINE L1 638 2110 -397 405 240 83 45 chr3 146320485 146320727 -81203851 + HAL1 LINE L1 2195 2445 -62 264 315 18 9 chr3 146322396 146322507 -81202071 - L2 LINE L2 -946 2368 2257 753 151 39 136 chr3 146322771 146322977 -81201601 + LOR1-int LTR ERV1 3786 3971 -4149 444 198 225 0 chr3 146323156 146323267 -81201311 + LOR1-int LTR ERV1 6008 6143 -615 1563 194 20 9 chr3 146323272 146323621 -81200957 + LOR1-int LTR ERV1 6389 7096 -4 1180 157 18 66 chr3 146323627 146323911 -81200667 + MER4D LTR ERV1 9 240 -632 871 153 42 0 chr3 146323899 146324043 -81200535 + MER49 LTR ERV1 611 760 -163 * 2106 291 54 21 chr3 146324642 146325443 -81199135 + LTR38-int LTR ERV1 6679 7505 -251 2650 140 35 5 chr3 146325639 146326074 -81198504 + LTR38 LTR ERV1 1 448 -108 692 209 15 48 chr3 146326206 146326412 -81198166 - L1M4 LINE L1 -1071 5075 4877 804 271 23 27 chr3 146326580 146326817 -81197761 - MIR SINE MIR 0 262 25 4830 82 29 16 chr3 146326817 146327498 -81197080 - SVA Other Other 0 1386 697 804 271 23 27 chr3 146327498 146327522 -81197056 - MIR SINE MIR -237 25 2 1530 178 20 0 chr3 146327586 146327839 -81196739 - MLT1D LTR MaLR 0 505 248 754 223 16 45 chr3 146328037 146328279 -81196299 - L1MC5 LINE L1 -48 7913 7679 339 203 15 17 chr3 146328489 146328614 -81195964 - MSTC LTR MaLR 0 453 305 267 309 122 16 chr3 146329199 146329445 -81195133 - L1MC/D LINE L1 -2254 5554 5283 2755 243 59 53 chr3 146330652 146331614 -81192964 - L1MC3 LINE L1 -17 7768 6862 2198 114 38 49 chr3 146331614 146331982 -81192596 + THE1B LTR MaLR 1 364 0 2755 243 59 53 chr3 146331982 146332076 -81192502 - L1MC3 LINE L1 -923 6862 6770 925 202 45 16 chr3 146332084 146332327 -81192251 - L1M4 LINE L1 -758 5388 5139 365 254 77 6 chr3 146332331 146332561 -81192017 - LTR16A LTR ERVL -5 445 177 550 134 35 6 chr3 146332679 146333002 -81191576 + (TA)n Simple_repeat Simple_repeat 1 332 0 1582 184 3 20 chr3 146333002 146333296 -81191282 - AluJb SINE Alu -23 289 1 572 208 8 16 chr3 146333321 146333446 -81191132 + FLAM_C SINE Alu 1 124 -19 1524 159 14 7 chr3 146333463 146333740 -81190838 + AluSx SINE Alu 4 282 -30 4392 54 22 8 chr3 146333878 146334472 -81190106 + L1PA3 LINE L1 5554 6155 0 243 204 0 0 chr3 146334538 146334592 -81189986 + (TA)n Simple_repeat Simple_repeat 2 55 0 592 183 16 136 chr3 146334764 146334955 -81189623 - AluSg/x SINE Alu -9 300 133 1412 208 115 26 chr3 146335242 146335669 -81188909 + MLT1C LTR MaLR 3 467 0 978 199 122 65 chr3 146335671 146335973 -81188605 + MER77 LTR ERV1 295 673 -4 207 0 0 0 chr3 146337884 146337907 -81186671 + (T)n Simple_repeat Simple_repeat 1 23 0 249 375 0 0 chr3 146338040 146338128 -81186450 + G-rich Low_complexity Low_complexity 3 90 0 380 211 29 19 chr3 146339047 146339151 -81185427 + LTR38 LTR ERV1 445 549 -7 189 0 0 0 chr3 146339553 146339574 -81185004 + (T)n Simple_repeat Simple_repeat 1 21 0 345 276 110 57 chr3 146340411 146340675 -81183903 - L1M4 LINE L1 -870 5276 4999 51 42 0 0 chr3 146340965 146341037 -81183541 + AT_rich Low_complexity Low_complexity 1 72 0 22 70 0 0 chr3 146341187 146341230 -81183348 + AT_rich Low_complexity Low_complexity 1 43 0 864 290 112 59 chr3 146341237 146342065 -81182513 - L1M4 LINE L1 -1939 4207 3336 470 306 132 26 chr3 146342161 146342616 -81181962 - L1M4 LINE L1 -2979 3167 2665 1535 217 122 52 chr3 146342783 146343266 -81181312 - MLT2B1 LTR ERVL -3 517 1 496 143 95 12 chr3 146343417 146343501 -81181077 + MER21B LTR ERV1 13 103 -760 * 741 129 0 0 chr3 146343496 146343597 -81180981 + U6 snRNA snRNA 1 101 -6 2303 254 55 18 chr3 146343614 146344275 -81180303 + MER21B LTR ERV1 94 778 -85 338 211 77 21 chr3 146344434 146344588 -81179990 + MIR SINE MIR 33 191 -59 33 66 0 0 chr3 146344620 146344681 -81179897 + AT_rich Low_complexity Low_complexity 1 61 0 1431 287 56 33 chr3 146345051 146346098 -81178480 + L1ME2 LINE L1 4851 5955 -209 320 338 29 50 chr3 146346488 146346870 -81177708 + L1 LINE L1 3184 3557 -2589 333 194 57 18 chr3 146347009 146347123 -81177455 + MLT1L LTR MaLR 95 277 -310 702 330 86 19 chr3 146347341 146347941 -81176637 + L1 LINE L1 3626 4264 -1882 383 268 81 0 chr3 146347941 146348064 -81176514 + MIR SINE MIR 109 241 -21 312 255 48 41 chr3 146348067 146348212 -81176366 + L1 LINE L1 4296 4441 -1705 2315 131 0 18 chr3 146348247 146348590 -81175988 - MER1B DNA MER1_type 0 337 1 1996 147 25 17 chr3 146348601 146348961 -81175617 + MLT1A1 LTR MaLR 1 363 -2 659 243 98 57 chr3 146349544 146349860 -81174718 - L1ME LINE L1 -516 5650 5305 2471 84 0 7 chr3 146349860 146350170 -81174408 - AluSg1 SINE Alu -1 308 1 659 243 98 57 chr3 146350170 146350236 -81174342 - L1ME LINE L1 -861 5305 5243 517 277 19 32 chr3 146350801 146350956 -81173622 - L1ME1 LINE L1 0 6166 6014 329 303 64 29 chr3 146351425 146351739 -81172839 - L1ME4a LINE L1 -2 6119 5795 281 237 0 13 chr3 146351772 146351848 -81172730 + MIR SINE MIR 182 256 -6 318 50 0 0 chr3 146352815 146352855 -81171723 + (GGA)n Simple_repeat Simple_repeat 2 41 0 378 0 0 0 chr3 146353644 146353686 -81170892 + (CA)n Simple_repeat Simple_repeat 2 43 0 235 247 97 43 chr3 146354008 146354101 -81170477 - L1ME4a LINE L1 -516 5605 5508 278 241 299 7 chr3 146354181 146354318 -81170260 - HAL1 LINE L1 -9 2498 2322 305 286 134 0 chr3 146354387 146354499 -81170079 - HAL1 LINE L1 -550 1957 1831 481 242 53 8 chr3 146355079 146355211 -81169367 + L1MD1 LINE L1 6092 6229 -13 525 256 112 51 chr3 146356448 146356779 -81167799 - L1MC5 LINE L1 -271 7690 7328 706 205 48 67 chr3 146356779 146356989 -81167589 - MER3 DNA MER1_type -3 206 1 525 256 112 51 chr3 146356989 146357067 -81167511 - L1MC5 LINE L1 -633 7328 7256 343 228 26 70 chr3 146357167 146357309 -81167269 - L1MC5 LINE L1 -645 7224 7024 2016 138 14 0 chr3 146357403 146357692 -81166886 - AluSx SINE Alu -17 295 3 467 280 53 93 chr3 146357759 146358155 -81166423 + L2 LINE L2 2858 3237 -35 2155 106 3 0 chr3 146359066 146359382 -81165196 - AluSx SINE Alu 0 317 1 250 276 128 51 chr3 146359580 146359837 -81164741 + HAL1 LINE L1 185 461 -2046 434 259 45 45 chr3 146360086 146360287 -81164291 + HAL1 LINE L1 840 1040 -1467 * 2068 131 37 11 chr3 146360271 146360621 -81163957 + L1MC2 LINE L1 5467 5825 -1960 590 195 25 0 chr3 146360625 146360743 -81163835 + FLAM_A SINE Alu 14 134 -8 1173 150 0 26 chr3 146360786 146360979 -81163599 + AluJb SINE Alu 112 299 -13 1970 185 152 9 chr3 146360979 146361434 -81163144 + L1MC2 LINE L1 5823 6342 -2 1413 188 34 68 chr3 146361441 146362041 -81162537 + L1MD2 LINE L1 4939 5512 -744 282 105 0 0 chr3 146362044 146362082 -81162496 + HERVH LTR ERV1 3956 3993 -3720 471 141 0 0 chr3 146362147 146362218 -81162360 + HERVH LTR ERV1 3994 4064 -3649 2059 169 31 0 chr3 146362218 146362568 -81162010 + L1MD2 LINE L1 5508 5868 -491 1386 112 5 15 chr3 146362669 146362875 -81161703 + AluSg/x SINE Alu 109 312 0 1060 269 97 27 chr3 146364079 146364988 -81159590 + L1ME4a LINE L1 5123 6118 -3 786 309 40 3 chr3 146365003 146365353 -81159225 + L1ME4a LINE L1 5754 6116 -5 2212 112 0 0 chr3 146365368 146365655 -81158923 - AluSx SINE Alu -25 287 1 239 258 0 16 chr3 146365678 146365740 -81158838 + L1ME LINE L1 5602 5662 -459 961 190 50 0 chr3 146365749 146365949 -81158629 + MER20 DNA MER1_type 3 212 -7 405 245 113 26 chr3 146366105 146366256 -81158322 + MLT1L LTR MaLR 431 594 -21 194 326 51 10 chr3 146366472 146366570 -81158008 + L2 LINE L2 2948 3049 -223 593 167 98 38 chr3 146366714 146366846 -81157732 + MER44D DNA MER2_type 4 413 -196 2329 248 105 60 chr3 146366947 146368019 -81156559 - HAL1 LINE L1 -705 1802 671 1974 108 0 4 chr3 146368019 146368279 -81156299 - AluJo SINE Alu -29 283 25 2329 248 105 60 chr3 146368279 146368388 -81156190 - HAL1 LINE L1 -1836 671 568 560 276 71 77 chr3 146368415 146368894 -81155684 - HAL1 LINE L1 -2030 477 2 773 175 76 0 chr3 146372685 146372856 -81151722 + MER5A DNA MER1_type 6 189 0 39 95 0 0 chr3 146372872 146372988 -81151590 + AT_rich Low_complexity Low_complexity 1 116 0 2256 64 50 0 chr3 146372988 146373268 -81151310 + AluY SINE Alu 1 294 -17 387 0 0 0 chr3 146373269 146373312 -81151266 + (TA)n Simple_repeat Simple_repeat 1 43 0 210 294 0 0 chr3 146373327 146373378 -81151200 + CT-rich Low_complexity Low_complexity 3 53 0 280 276 326 6 chr3 146374102 146374446 -81150132 - L2 LINE L2 -4 3309 2856 1153 299 138 19 chr3 146374508 146375253 -81149325 - L2 LINE L2 -623 2691 1858 442 220 28 9 chr3 146375268 146375377 -81149201 + L1MD3 LINE L1 7871 7981 -14 350 332 81 5 chr3 146375422 146375645 -81148933 - L2 LINE L2 -1485 1829 1590 993 314 149 13 chr3 146375656 146376286 -81148292 - L2 LINE L2 -1985 1329 614 532 348 56 3 chr3 146376468 146376770 -81147808 + MER20B DNA MER1_type 23 340 -443 1136 240 181 13 chr3 146376973 146377360 -81147218 - L1MD2 LINE L1 -8 6351 5900 * 4266 145 108 37 chr3 146377359 146378357 -81146221 - L1MDa LINE L1 -3984 2556 1488 276 319 88 0 chr3 146378489 146378602 -81145976 + L2 LINE L2 2975 3097 -216 1791 178 0 7 chr3 146378683 146378986 -81145592 - AluJb SINE Alu -11 301 1 239 222 94 68 chr3 146379407 146379524 -81145054 - LTR50 LTR ERVL -608 187 68 181 339 0 16 chr3 146379678 146379740 -81144838 + L3 LINE CR1 1497 1557 -20 1862 334 64 6 chr3 146379811 146380608 -81143970 - ERVL LTR ERVL -287 5477 4635 1124 208 13 26 chr3 146380620 146380846 -81143732 + MER58A DNA MER1_type 2 224 0 1300 273 81 21 chr3 146380852 146381574 -81143004 - ERVL LTR ERVL -1069 4585 3836 552 335 30 19 chr3 146381900 146382163 -81142415 - ERVL LTR ERVL -5147 617 352 192 316 142 58 chr3 146382303 146382458 -81142120 + L2 LINE L2 3137 3304 -9 651 293 165 0 chr3 146382914 146383187 -81141391 - MLT1H LTR MaLR -231 318 1 639 316 34 44 chr3 146383403 146383723 -81140855 + L1ME3 LINE L1 3 319 -5800 2588 200 72 19 chr3 146383737 146384267 -81140311 + MER89 LTR ERV1 1 558 -1 1486 319 70 25 chr3 146384272 146386352 -81138226 + L1ME3 LINE L1 3712 5914 -247 2228 111 26 57 chr3 146386363 146386750 -81137828 - THE1C LTR MaLR 0 375 1 243 0 0 0 chr3 146386939 146386966 -81137612 + (CA)n Simple_repeat Simple_repeat 2 28 0 329 139 0 56 chr3 146387306 146387378 -81137200 + MER103 DNA DNA 53 120 -46 1181 260 39 39 chr3 146387599 146388030 -81136548 + L1ME1 LINE L1 5735 6165 -1 734 288 152 52 chr3 146388490 146389024 -81135554 + MLT1K LTR MaLR 2 588 0 196 273 0 0 chr3 146389186 146389230 -81135348 - MIR SINE MIR -109 153 110 3772 215 23 37 chr3 146390251 146391172 -81133406 + L1M4 LINE L1 1 908 -5634 556 297 73 0 chr3 146392092 146392284 -81132294 + MIR SINE MIR 46 251 -11 247 342 9 18 chr3 146393316 146393430 -81131148 + MIR SINE MIR 33 145 -63 246 316 132 43 chr3 146393608 146393912 -81130666 + L2 LINE L2 2920 3250 -22 494 174 200 9 chr3 146394269 146394384 -81130194 - FRAM SINE Alu -6 170 34 324 0 0 0 chr3 146394404 146394440 -81130138 + (CAAAAA)n Simple_repeat Simple_repeat 4 39 0 339 244 11 0 chr3 146395581 146395671 -81128907 + L1ME3 LINE L1 6054 6144 -1 250 284 14 14 chr3 146395691 146395765 -81128813 + CT-rich Low_complexity Low_complexity 1 74 0 260 210 0 32 chr3 146396255 146396317 -81128261 + CT-rich Low_complexity Low_complexity 1 60 0 304 341 29 14 chr3 146396437 146396575 -81128003 + MIR3 SINE MIR 4 143 -65 388 219 101 0 chr3 146396974 146397093 -81127485 - Charlie8 DNA MER1_type -2248 169 39 187 246 0 35 chr3 146397152 146397209 -81127369 - MIR SINE MIR -141 121 67 714 211 0 0 chr3 146397233 146397413 -81127165 + (TCCA)n Simple_repeat Simple_repeat 1 180 0 756 331 37 20 chr3 146397429 146397728 -81126850 - L2 LINE L2 -1 3312 3009 2400 80 0 0 chr3 146397728 146398029 -81126549 + AluSp SINE Alu 1 301 -12 305 255 149 43 chr3 146398211 146398419 -81126159 - L2 LINE L2 -666 2648 2419 215 332 10 18 chr3 146398700 146398813 -81125765 - MIR SINE MIR -60 148 35 1200 280 88 41 chr3 146399163 146399479 -81125099 + MLT1H LTR MaLR 15 366 -183 4056 148 12 5 chr3 146399479 146400130 -81124448 + L1MA3 LINE L1 5649 6304 -1 1200 280 88 41 chr3 146400130 146400324 -81124254 + MLT1H LTR MaLR 366 549 0 558 270 90 26 chr3 146400708 146400941 -81123637 + MIR SINE MIR 13 260 -2 237 331 66 11 chr3 146401384 146401536 -81123042 - MIR SINE MIR -11 197 31 188 316 10 51 chr3 146401865 146401963 -81122615 + MIR3 SINE MIR 114 207 -1 253 235 24 12 chr3 146404142 146404227 -81120351 + (CA)n Simple_repeat Simple_repeat 1 86 0 471 182 0 0 chr3 146404436 146404557 -81120021 + CT-rich Low_complexity Low_complexity 2 122 0 279 0 0 0 chr3 146404557 146404588 -81119990 + (CA)n Simple_repeat Simple_repeat 1 31 0 240 270 48 109 chr3 146404952 146405182 -81119396 - L2 LINE L2 -25 3247 3032 234 164 18 18 chr3 146405531 146405586 -81118992 - MIR3 SINE MIR -37 171 117 221 279 8 0 chr3 146405687 146405816 -81118762 + (TG)n Simple_repeat Simple_repeat 1 130 0 280 358 62 5 chr3 146406307 146406500 -81118078 + L1ME3 LINE L1 5862 6065 -97 369 312 7 7 chr3 146408601 146408755 -81115823 + (CA)n Simple_repeat Simple_repeat 2 155 0 251 398 31 8 chr3 146409163 146409291 -81115287 - L2 LINE L2 -1 3312 3182 341 294 83 11 chr3 146409577 146409757 -81114821 - L2 LINE L2 -652 2662 2470 1658 188 192 7 chr3 146409838 146410259 -81114319 + MLT1D LTR MaLR 7 505 0 209 176 27 68 chr3 146410377 146410451 -81114127 - L2 LINE L2 -1166 2148 2078 1417 271 12 10 chr3 146410482 146410892 -81113686 + L1ME1 LINE L1 5751 6161 -5 199 238 125 0 chr3 146410892 146410972 -81113606 - L2 LINE L2 -1296 2018 1929 270 303 53 64 chr3 146411032 146411296 -81113282 + MLT1L LTR MaLR 134 394 -221 1621 154 0 0 chr3 146411356 146411609 -81112969 - AluSx SINE Alu -32 280 28 564 276 141 24 chr3 146411759 146412049 -81112529 + LTR33 LTR ERVL 133 456 -65 323 347 66 20 chr3 146412683 146412762 -81111816 + L1M4 LINE L1 2205 2279 -3867 2278 99 3 10 chr3 146412762 146413076 -81111502 + AluSx SINE Alu 1 312 0 323 347 66 20 chr3 146413076 146413192 -81111386 + L1M4 LINE L1 2279 2409 -3737 498 278 224 15 chr3 146413742 146413947 -81110631 - MIR SINE MIR -5 257 10 2235 177 34 0 chr3 146415276 146415689 -81108889 - MSTB1 LTR MaLR -1 431 5 251 220 40 26 chr3 146415755 146415989 -81108589 + (CATA)n Simple_repeat Simple_repeat 1 237 0 207 156 0 0 chr3 146416011 146416043 -81108535 - MIR SINE MIR -109 153 122 2288 82 0 0 chr3 146416524 146416816 -81107762 + AluSq SINE Alu 1 292 -21 1037 302 138 19 chr3 146417071 146417585 -81106993 + MLT1K LTR MaLR 14 588 0 1842 231 52 35 chr3 146417801 146418339 -81106239 - LTR38 LTR ERV1 -9 547 1 180 222 28 102 chr3 146418350 146418458 -81106120 + MIR SINE MIR 34 133 -129 195 335 239 19 chr3 146418515 146418670 -81105908 - L2 LINE L2 0 3313 3125 371 295 0 0 chr3 146418734 146418846 -81105732 + Charlie5 DNA MER1_type 16 127 -2485 1025 193 19 78 chr3 146418867 146419241 -81105337 + Charlie5 DNA MER1_type 2272 2623 0 492 268 142 0 chr3 146419271 146419461 -81105117 - L2 LINE L2 -246 3067 2851 693 251 107 40 chr3 146419518 146419916 -81104662 + MLT1G1 LTR MaLR 16 531 -59 423 241 26 26 chr3 146420022 146420138 -81104440 - L2 LINE L2 -576 2738 2623 292 346 22 7 chr3 146420237 146420373 -81104205 - MIR SINE MIR -117 145 8 390 290 16 16 chr3 146420661 146420785 -81103793 + MIR3 SINE MIR 70 193 -15 555 189 122 47 chr3 146420819 146420967 -81103611 - MLT1K LTR MaLR -15 573 415 265 236 47 47 chr3 146421053 146421159 -81103419 - MLT1K LTR MaLR -338 250 145 465 245 142 27 chr3 146422157 146422401 -81102177 + MLT1H LTR MaLR 7 332 -217 5927 107 37 47 chr3 146422401 146423815 -81100763 + pTR5 LTR ERV1 744 2295 -143 365 229 23 13 chr3 146423932 146424246 -81100332 + (CAGCC)n Simple_repeat Simple_repeat 1 317 0 289 212 114 93 chr3 146424247 146424440 -81100138 + MLT1H LTR MaLR 336 532 -17 264 309 11 0 chr3 146424805 146424899 -81099679 + (CA)n Simple_repeat Simple_repeat 2 96 0 628 315 78 10 chr3 146425010 146425305 -81099273 + L1MC/D LINE L1 5437 5751 -2057 356 301 57 38 chr3 146426445 146426654 -81097924 - LTR16C LTR ERVL -1 490 278 461 353 24 0 chr3 146427056 146427223 -81097355 - MIR SINE MIR -76 186 16 309 293 138 17 chr3 146427935 146428144 -81096434 + MLT1G LTR MaLR 6 199 -391 724 217 128 38 chr3 146428189 146428424 -81096154 + MLT1G LTR MaLR 324 579 -11 220 277 18 89 chr3 146428825 146428937 -81095641 + MER5A DNA MER1_type 9 112 -77 204 222 22 0 chr3 146429427 146429472 -81095106 + CT-rich Low_complexity Low_complexity 2 47 0 560 297 165 42 chr3 146430842 146431370 -81093208 - MLT1E LTR MaLR 0 593 1 593 264 219 10 chr3 146432623 146433096 -81091482 + L1ME3 LINE L1 4945 5515 -649 270 323 115 23 chr3 146433206 146433336 -81091242 + L1ME3 LINE L1 5676 5817 -345 394 247 0 0 chr3 146433350 146433435 -81091143 - MER81 DNA DNA -26 88 4 258 302 10 28 chr3 146433449 146433557 -81091021 + L1ME3 LINE L1 5843 5948 -222 23 0 0 0 chr3 146433790 146433813 -81090765 + AT_rich Low_complexity Low_complexity 1 23 0 244 229 52 26 chr3 146435205 146435358 -81089220 + (TA)n Simple_repeat Simple_repeat 2 158 0 1655 167 3 29 chr3 146435466 146435772 -81088806 + AluJo SINE Alu 1 298 -14 527 271 54 12 chr3 146436252 146436418 -81088160 - MER58C DNA MER1_type -42 173 1 455 303 84 11 chr3 146436418 146436705 -81087873 + L1M4 LINE L1 3898 4205 -1941 509 323 137 16 chr3 146436707 146436756 -81087822 + L1M3c LINE L1 1025 1067 -5143 6015 131 27 0 chr3 146436756 146437635 -81086943 - MER4D LTR ERV1 0 903 1 509 323 137 16 chr3 146437635 146437956 -81086622 + L1M3c LINE L1 1067 4772 -1438 445 347 40 36 chr3 146437994 146438219 -81086359 + L1M3c LINE L1 4855 5080 -1130 227 337 11 65 chr3 146438513 146438697 -81085881 + L2 LINE L2 2809 2982 -290 701 352 38 23 chr3 146438949 146439293 -81085285 - MLT1K LTR MaLR -203 385 37 1152 111 0 0 chr3 146439522 146439702 -81084876 + (CAGAC)n Simple_repeat Simple_repeat 1 180 0 1026 140 0 0 chr3 146439727 146439906 -81084672 + (CAGAC)n Simple_repeat Simple_repeat 1 179 0 668 99 0 20 chr3 146440010 146440111 -81084467 + L1MA2 LINE L1 6206 6304 0 24 0 0 0 chr3 146440116 146440140 -81084438 + AT_rich Low_complexity Low_complexity 1 24 0 649 267 60 40 chr3 146440220 146440471 -81084107 + Charlie8 DNA MER1_type 35 290 -2127 294 238 48 24 chr3 146441349 146441433 -81083145 - MIR SINE MIR -70 192 107 1011 275 24 3 chr3 146441547 146441845 -81082733 - MER33 DNA MER1_type 0 324 21 416 225 187 5 chr3 146443032 146443219 -81081359 - LTR16A1 LTR ERVL -11 446 226 1488 178 50 7 chr3 146444217 146444515 -81080063 + L1MB3 LINE L1 5858 6168 -15 2114 110 0 3 chr3 146444523 146444814 -81079764 - AluSx SINE Alu -20 292 3 27 0 0 0 chr3 146444822 146444849 -81079729 + AT_rich Low_complexity Low_complexity 1 27 0 1863 148 28 0 chr3 146444858 146445149 -81079429 + AluJo SINE Alu 10 308 -4 200 423 21 0 chr3 146445980 146446077 -81078501 + L2 LINE L2 3162 3260 -12 1146 229 52 13 chr3 146446138 146446448 -81078130 + MER102b DNA MER1_type 20 341 0 312 48 0 0 chr3 146446475 146446517 -81078061 + (TG)n Simple_repeat Simple_repeat 1 42 0 235 341 0 22 chr3 146446869 146446960 -81077618 + MIR3 SINE MIR 96 184 -24 1067 289 151 11 chr3 146448138 146448581 -81075997 + MLT1K LTR MaLR 76 580 -8 927 226 39 0 chr3 146448836 146449040 -81075538 - MER58A DNA MER1_type 0 224 13 288 324 9 9 chr3 146449247 146449352 -81075226 + MIR SINE MIR 21 125 -137 382 338 90 0 chr3 146449870 146450071 -81074507 + L1ME4a LINE L1 5676 5894 -227 280 157 143 14 chr3 146450320 146450390 -81074188 + HERV3 LTR ERV1 1686 1764 -6662 719 257 120 0 chr3 146450409 146450685 -81073893 + MLT1H1 LTR MaLR 262 551 -4 256 375 6 6 chr3 146451094 146451254 -81073324 + REP3 LTR ERV 110 316 -246 203 250 0 0 chr3 146451522 146451570 -81073008 + L2 LINE L2 2927 2974 -298 327 311 60 29 chr3 146452175 146452422 -81072156 + MIR SINE MIR 12 261 -1 750 133 0 0 chr3 146452455 146452560 -81072018 + FLAM_C SINE Alu 2 106 -37 407 303 73 0 chr3 146452560 146452738 -81071840 - LTR16C LTR ERVL -38 453 263 3760 181 27 68 chr3 146452752 146453649 -81070929 + L1MB2 LINE L1 4827 5759 -412 1952 136 0 34 chr3 146453649 146453972 -81070606 + AluSx SINE Alu 1 312 0 3760 181 27 68 chr3 146453972 146454373 -81070205 + L1MB2 LINE L1 5759 6064 -107 1618 185 17 10 chr3 146454373 146454665 -81069913 + AluSx SINE Alu 1 294 -18 3760 181 27 68 chr3 146454665 146454766 -81069812 + L1MB2 LINE L1 6064 6168 -3 301 306 37 0 chr3 146454896 146455004 -81069574 - LTR16C LTR ERVL -244 247 136 548 238 143 0 chr3 146455151 146455319 -81069259 - MIR SINE MIR -69 193 2 201 121 0 0 chr3 146456465 146456498 -81068080 + (TC)n Simple_repeat Simple_repeat 1 33 0 300 287 19 37 chr3 146456701 146456809 -81067769 - MIR SINE MIR -1 261 156 721 266 116 7 chr3 146456994 146457283 -81067295 + MLT1G LTR MaLR 219 533 -62 285 250 13 0 chr3 146457318 146457394 -81067184 - MIR SINE MIR -110 152 76 346 234 39 39 chr3 146457425 146457553 -81067025 + MLT1H LTR MaLR 81 208 -341 320 287 82 10 chr3 146458393 146458545 -81066033 - MIR3 SINE MIR -65 143 2 512 255 67 108 chr3 146458648 146458989 -81065589 + L2 LINE L2 2916 3242 -30 301 259 0 12 chr3 146459802 146459887 -81064691 - Charlie8 DNA MER1_type -2246 171 88 427 291 40 0 chr3 146460072 146460223 -81064355 - MIR SINE MIR -58 204 48 966 219 122 7 chr3 146460280 146460523 -81064055 - MER44D DNA MER2_type -63 546 3 448 269 51 34 chr3 146461966 146462141 -81062437 + MER63A DNA MER1_type 27 204 -6 300 211 0 0 chr3 146462189 146462246 -81062332 - L1ME LINE L1 -465 5725 5669 1073 165 0 0 chr3 146462252 146462428 -81062150 - AluJb SINE Alu 0 312 137 373 344 48 16 chr3 146462431 146462617 -81061961 - L1ME LINE L1 -512 5678 5487 498 349 73 26 chr3 146463582 146463983 -81060595 - L1MEc LINE L1 -3711 2523 2118 1968 131 7 3 chr3 146463993 146464298 -81060280 - AluSx SINE Alu -6 306 1 236 184 41 0 chr3 146465032 146465081 -81059497 + LTR33 LTR ERVL 383 433 -88 4097 127 60 3 chr3 146465085 146465753 -81058825 - MER50 LTR ERV1 -28 706 1 335 327 117 39 chr3 146466131 146466807 -81057771 - HAL1 LINE L1 -738 1769 1041 1580 191 61 31 chr3 146467190 146467222 -81057356 - MLT2B2 LTR ERVL -7 508 478 449 62 15 0 chr3 146467222 146467287 -81057291 + (TAGA)n Simple_repeat Simple_repeat 3 68 0 1580 191 61 31 chr3 146467287 146467705 -81056873 - MLT2B2 LTR ERVL -37 478 1 695 256 72 123 chr3 146467870 146467974 -81056604 - LTR16A LTR ERVL -57 393 285 2580 33 0 3 chr3 146467974 146468279 -81056299 + AluY SINE Alu 1 304 -7 695 256 72 123 chr3 146468279 146468588 -81055990 - LTR16A LTR ERVL -165 285 1 2794 94 11 3 chr3 146468900 146469271 -81055307 + THE1C LTR MaLR 1 374 -1 270 264 56 0 chr3 146469373 146469445 -81055133 - MER113 DNA MER1_type? -283 238 163 200 349 80 34 chr3 146469454 146469629 -81054949 - L3 LINE CR1 -1232 345 163 1317 231 13 7 chr3 146469940 146470238 -81054340 + AluJo SINE Alu 3 302 -10 803 296 100 14 chr3 146470385 146470756 -81053822 - MER113 DNA MER1_type? -112 409 7 187 300 0 0 chr3 146471218 146471268 -81053310 - L2 LINE L2 -13 3259 3210 242 295 25 66 chr3 146471565 146471687 -81052891 - MLT1J LTR MaLR -370 141 25 544 305 80 19 chr3 146472164 146472377 -81052201 - MIR SINE MIR -36 226 1 466 289 94 82 chr3 146473255 146473670 -81050908 - L2 LINE L2 0 3272 2853 668 335 85 10 chr3 146474382 146474782 -81049796 + LTR16B LTR ERVL 34 463 -1 282 330 44 0 chr3 146475310 146475401 -81049177 - MIR SINE MIR -84 124 30 440 367 30 27 chr3 146475495 146475795 -81048783 + L1ME LINE L1 4743 5043 -1103 2611 149 36 0 chr3 146475974 146476391 -81048187 - MSTB1 LTR MaLR 0 432 1 366 354 62 58 chr3 146476451 146476776 -81047802 + L1ME LINE L1 5356 5681 -440 344 193 73 28 chr3 146476816 146476925 -81047653 - L1MC5 LINE L1 -34 7927 7814 660 224 66 43 chr3 146476927 146477231 -81047347 - L1MC5 LINE L1 -184 7777 7467 1456 183 52 16 chr3 146478226 146478707 -81045871 - MER74A LTR ERVL 0 558 1 315 303 74 6 chr3 146478707 146478882 -81045696 + L2 LINE L2 2433 2619 -695 534 280 135 31 chr3 146478946 146479464 -81045114 + MLT1H1 LTR MaLR 16 555 0 486 296 156 0 chr3 146479466 146479652 -81044926 + L2 LINE L2 2677 2891 -423 3677 159 32 38 chr3 146479749 146480490 -81044088 + L1MB3 LINE L1 5445 6181 -2 214 348 148 0 chr3 146480578 146480693 -81043885 - L2 LINE L2 -19 3253 3122 440 266 44 0 chr3 146480791 146480904 -81043674 + MIR SINE MIR 82 199 -63 2063 141 0 0 chr3 146481864 146482172 -81042406 - AluSx SINE Alu 0 308 1 254 333 65 37 chr3 146482246 146482354 -81042224 - MIR SINE MIR -87 121 11 577 148 66 9 chr3 146483096 146483269 -81041309 - MER33 DNA MER1_type -50 313 46 230 234 125 0 chr3 146483272 146483336 -81041242 - L2 LINE L2 -62 3251 3180 1334 268 146 27 chr3 146484287 146484951 -81039627 - L2 LINE L2 -339 2975 2233 403 310 73 15 chr3 146485045 146485306 -81039272 - LTR16A LTR ERVL -143 307 32 209 250 54 0 chr3 146485354 146485410 -81039168 - MIR SINE MIR -119 143 85 450 230 108 14 chr3 146485675 146485814 -81038764 - MIR SINE MIR -48 214 63 287 280 53 33 chr3 146486761 146486911 -81037667 - MIR SINE MIR -87 175 23 467 269 108 0 chr3 146487028 146487214 -81037364 + L2 LINE L2 2855 3060 -253 197 313 36 12 chr3 146487272 146487355 -81037223 + L2 LINE L2 3178 3262 -51 194 317 120 19 chr3 146487399 146487604 -81036974 - MIR SINE MIR -16 246 20 322 286 60 36 chr3 146489300 146489468 -81035110 + L1ME3A LINE L1 5695 5866 -304 518 189 0 8 chr3 146489869 146490120 -81034458 + (CA)n Simple_repeat Simple_repeat 1 248 0 482 214 0 11 chr3 146490132 146490314 -81034264 + (CA)n Simple_repeat Simple_repeat 1 180 0 624 182 0 0 chr3 146490351 146490527 -81034051 + (CA)n Simple_repeat Simple_repeat 2 177 0 534 207 0 0 chr3 146490547 146490726 -81033852 + (CA)n Simple_repeat Simple_repeat 2 180 0 718 170 11 0 chr3 146490752 146491038 -81033540 + (CA)n Simple_repeat Simple_repeat 1 289 0 541 175 9 0 chr3 146491051 146491283 -81033295 + (CA)n Simple_repeat Simple_repeat 1 234 0 275 194 22 8 chr3 146491304 146491438 -81033140 + (CA)n Simple_repeat Simple_repeat 1 136 0 405 202 11 6 chr3 146491455 146491633 -81032945 + (CA)n Simple_repeat Simple_repeat 1 179 0 351 199 23 11 chr3 146491663 146491839 -81032739 + (CA)n Simple_repeat Simple_repeat 2 179 0 294 229 0 0 chr3 146491935 146492057 -81032521 + (CA)n Simple_repeat Simple_repeat 1 122 0 279 194 57 12 chr3 146493121 146493206 -81031372 + MLT1G1 LTR MaLR 239 414 -181 247 247 39 13 chr3 146493183 146493260 -81031318 + MLT1F LTR MaLR 354 432 -110 * 670 173 60 7 chr3 146493312 146493462 -81031116 + MLT1A2 LTR MaLR 4 161 -213 819 122 16 8 chr3 146493589 146493712 -81030866 - AluJb SINE Alu -188 124 1 1649 243 115 35 chr3 146493712 146494699 -81029879 - L1MDa LINE L1 -5310 1230 16 998 136 23 0 chr3 146496687 146496864 -81027714 - L1MA7 LINE L1 -1 6290 6110 194 172 150 29 chr3 146497254 146497359 -81027219 - MIR SINE MIR -89 119 2 192 278 133 0 chr3 146499564 146499654 -81024924 + MIR SINE MIR 78 179 -83 325 250 189 0 chr3 146499769 146499901 -81024677 + MIR SINE MIR 56 212 -50 533 291 91 17 chr3 146500053 146500403 -81024175 + MER90 LTR ERV1 3 378 -197 296 320 77 0 chr3 146500601 146500757 -81023821 - LTR33A LTR ERVL -31 492 325 383 213 188 25 chr3 146500835 146500995 -81023583 - LTR33A LTR ERVL -328 195 10 400 284 0 0 chr3 146501028 146501123 -81023455 + C-rich Low_complexity Low_complexity 4 98 0 439 248 134 0 chr3 146501643 146501792 -81022786 - MER113 DNA MER1_type? -193 328 160 1652 156 108 0 chr3 146501836 146502105 -81022473 + AluJb SINE Alu 1 298 -14 628 265 142 51 chr3 146503118 146503491 -81021087 + L1M4 LINE L1 2942 3348 -2798 2095 104 38 0 chr3 146503525 146503813 -81020765 + AluSp SINE Alu 1 299 -14 389 299 107 56 chr3 146503934 146504452 -81020126 + L1M4 LINE L1 2547 3984 -2162 1081 261 138 24 chr3 146504569 146505360 -81019218 + L1MA9 LINE L1 2856 3741 -3824 569 128 0 0 chr3 146505369 146505455 -81019123 + HY3 scRNA scRNA 14 99 -2 625 284 104 10 chr3 146505457 146505869 -81018709 + L1MA9 LINE L1 3734 4184 -3381 461 290 77 11 chr3 146505864 146506136 -81018442 + L1M4 LINE L1 4979 5268 -878 * 390 276 110 60 chr3 146506174 146506437 -81018141 + L1MC4 LINE L1 7507 7892 -150 226 274 49 29 chr3 146506505 146506607 -81017971 + L1MC4 LINE L1 7905 8008 -34 2313 212 98 42 chr3 146506642 146507336 -81017242 - MER44D DNA MER2_type 0 605 1 419 250 73 29 chr3 146508493 146508629 -81015949 + L1MA9 LINE L1 4338 4479 -3086 2494 218 58 38 chr3 146508633 146509484 -81015094 + L1MA9 LINE L1 6820 7693 -38 22 0 0 0 chr3 146509660 146509682 -81014896 + AT_rich Low_complexity Low_complexity 1 22 0 191 141 47 109 chr3 146512553 146512617 -81011961 - L2 LINE L2 -825 2489 2430 1338 75 150 0 chr3 146513397 146513597 -81010981 - MER30 DNA MER1_type 0 230 1 330 268 0 0 chr3 146515340 146515422 -81009156 - MIR SINE MIR -8 254 173 309 273 86 43 chr3 146515574 146515761 -81008817 + LTR33 LTR ERVL 296 490 -31 878 201 0 24 chr3 146515891 146516060 -81008518 - FRAM SINE Alu 0 166 2 21 89 0 0 chr3 146516349 146516405 -81008173 + AT_rich Low_complexity Low_complexity 1 56 0 295 321 41 19 chr3 146516432 146516793 -81007785 - L1M4c LINE L1 -828 1679 1309 817 223 114 53 chr3 146516845 146517258 -81007320 + L1ME3 LINE L1 4630 5067 -1079 645 184 7 0 chr3 146517249 146517390 -81007188 + L1MD3 LINE L1 7845 7986 -9 * 525 281 52 30 chr3 146517360 146517630 -81006948 + L1ME3 LINE L1 5017 5292 -854 * 553 160 189 0 chr3 146517649 146517755 -81006823 + FRAM SINE Alu 24 149 -27 1434 233 123 48 chr3 146517776 146517922 -81006656 + L1ME3 LINE L1 5474 5608 -554 333 118 0 0 chr3 146517922 146517973 -81006605 + (TA)n Simple_repeat Simple_repeat 2 52 0 1434 233 123 48 chr3 146517973 146518405 -81006173 + L1ME3 LINE L1 5608 6095 -67 807 196 35 8 chr3 146518404 146518599 -81005979 + L1MDa LINE L1 1261 1539 -4843 * 9286 200 45 18 chr3 146518597 146521540 -81003038 + L1MB7 LINE L1 2866 5909 -275 1765 152 73 14 chr3 146521540 146521829 -81002749 + AluSx SINE Alu 7 312 0 9286 200 45 18 chr3 146521829 146522097 -81002481 + L1MB7 LINE L1 5909 6168 -16 192 40 0 0 chr3 146522481 146522506 -81002072 + (GA)n Simple_repeat Simple_repeat 1 25 0 327 206 151 0 chr3 146522507 146522580 -81001998 + L1MC4 LINE L1 7929 8012 -30 888 204 16 21 chr3 146523867 146524053 -81000525 + AluJo SINE Alu 108 292 -20 227 91 0 45 chr3 146524053 146524097 -81000481 + (AGGGGG)n Simple_repeat Simple_repeat 5 46 0 1388 150 4 42 chr3 146724486 146724726 -80799852 + AluJb SINE Alu 82 312 0 244 261 340 7 chr3 146724884 146725037 -80799541 - MIR SINE MIR -20 242 39 2046 146 16 10 chr3 146725463 146725771 -80798807 + AluJo SINE Alu 1 310 -2 796 261 138 3 chr3 146725801 146726092 -80798486 - L3 LINE CR1 -3 1574 1245 313 254 166 68 chr3 146726121 146726326 -80798252 - L3 LINE CR1 -758 819 595 250 146 24 0 chr3 146726442 146726483 -80798095 + Tigger5 DNA MER2_type 2282 2323 0 1198 201 60 16 chr3 146726850 146727148 -80797430 - L1PA8A LINE L1 -384 5748 5461 550 245 94 21 chr3 146727313 146727505 -80797073 + MIR SINE MIR 6 211 -51 443 95 16 0 chr3 146728976 146729039 -80795539 + AluS SINE Alu 2 65 -248 548 189 47 31 chr3 146729102 146729229 -80795349 + L2 LINE L2 3139 3267 -5 25 31 0 0 chr3 146731069 146731101 -80793477 + AT_rich Low_complexity Low_complexity 1 32 0 2112 72 24 31 chr3 146731110 146731400 -80793178 + AluY SINE Alu 1 288 -23 619 275 24 36 chr3 146731564 146731815 -80792763 + L1MC4a LINE L1 5668 5915 -1893 1794 189 9 9 chr3 146731829 146732167 -80792411 - MER4D LTR ERV1 -10 893 556 339 142 35 41 chr3 146732167 146732278 -80792300 - MER4E LTR ERV1 -586 286 69 * 1676 135 40 7 chr3 146732262 146732559 -80792019 - MER49 LTR ERV1 -616 307 1 186 43 0 0 chr3 146734206 146734229 -80790349 + (TTA)n Simple_repeat Simple_repeat 2 24 0 373 216 98 29 chr3 146737482 146737584 -80786994 + MER91C DNA MER1_type 4 112 -28 1877 158 10 10 chr3 146737688 146737980 -80786598 + AluJo SINE Alu 3 294 -18 363 309 179 6 chr3 146738162 146738330 -80786248 - MIR SINE MIR 0 262 66 304 311 8 61 chr3 146738428 146738495 -80786083 + L1M LINE L1 5304 5362 -2446 2545 58 0 13 chr3 146738495 146738804 -80785774 + AluY SINE Alu 1 305 -6 304 311 8 61 chr3 146738804 146738868 -80785710 + L1M LINE L1 5362 5428 -2380 23 54 0 0 chr3 146739068 146739105 -80785473 + AT_rich Low_complexity Low_complexity 1 37 0 2551 61 0 0 chr3 146739994 146740289 -80784289 + AluSc SINE Alu 1 295 -14 1301 204 55 65 chr3 146740476 146740879 -80783699 + MER57A LTR ERV1 3 401 -2 2273 98 6 28 chr3 146740887 146741205 -80783373 - AluSx SINE Alu -1 311 1 232 193 96 48 chr3 146741254 146741337 -80783241 + MIR SINE MIR 174 260 -2 668 162 36 0 chr3 146741579 146741715 -80782863 + FLAM_C SINE Alu 2 141 0 296 234 78 13 chr3 146741788 146741865 -80782713 + L2 LINE L2 3212 3293 -20 338 325 88 50 chr3 146741887 146742127 -80782451 - MIR SINE MIR -13 249 1 1035 72 36 18 chr3 146742526 146742693 -80781885 + L1PA12 LINE L1 5997 6166 -2 7030 45 3 0 chr3 146742789 146743572 -80781006 + LTR5 LTR ERVK 1 785 -184 1870 98 16 0 chr3 146743622 146743895 -80780683 - AluSx SINE Alu 0 312 36 2492 90 0 0 chr3 146744044 146744355 -80780223 - AluY SINE Alu 0 311 1 1952 86 0 50 chr3 146744410 146744688 -80779890 - AluSx SINE Alu -2 310 47 1444 140 5 21 chr3 146744688 146744841 -80779737 - L1MC/D LINE L1 -541 5637 5483 2354 92 10 13 chr3 146744841 146745146 -80779432 - AluY SINE Alu -7 304 1 2293 112 16 3 chr3 146745146 146745451 -80779127 - AluSx SINE Alu -3 309 1 1444 140 5 21 chr3 146745451 146745567 -80779011 - L1MC/D LINE L1 -693 5485 5377 192 200 0 0 chr3 146745845 146745890 -80778688 + GA-rich Low_complexity Low_complexity 1 45 0 477 242 122 9 chr3 146745900 146746061 -80778517 + MIR3 SINE MIR 2 186 -22 202 284 0 59 chr3 146746117 146746219 -80778359 + L2 LINE L2 2914 3009 -263 263 192 0 0 chr3 146746223 146746275 -80778303 - L1MA9 LINE L1 0 6312 6261 750 180 73 0 chr3 146746306 146746456 -80778122 - AluJb SINE Alu -22 290 130 1331 152 22 52 chr3 146746614 146746883 -80777695 + MSTB LTR MaLR 166 426 0 540 207 0 0 chr3 146746886 146747002 -80777576 + L1 LINE L1 4670 4785 -1361 341 213 0 50 chr3 146747014 146747094 -80777484 + L1 LINE L1 5029 5104 -1042 268 216 70 87 chr3 146747115 146747188 -80777390 - L1MC5 LINE L1 -36 7925 7852 2188 129 0 3 chr3 146747188 146747483 -80777095 - AluSx SINE Alu -18 294 1 268 216 70 87 chr3 146747483 146747594 -80776984 - L1MC5 LINE L1 -109 7852 7744 3030 161 43 2 chr3 146747641 146748193 -80776385 - L1MB5 LINE L1 -12 6162 5588 736 293 98 37 chr3 146748501 146748538 -80776040 + MLT1K LTR MaLR 42 75 -513 3136 107 6 29 chr3 146748538 146748979 -80775599 + MER101 LTR ERV1 1 432 -42 1589 149 31 102 chr3 146748979 146749114 -80775464 + AluJo SINE Alu 1 144 -168 2557 86 0 3 chr3 146749114 146749427 -80775151 + AluSx SINE Alu 1 312 0 1589 149 31 102 chr3 146749427 146749613 -80774965 + AluJo SINE Alu 144 299 -13 3136 107 6 29 chr3 146749613 146749656 -80774922 + MER101 LTR ERV1 432 474 0 736 293 98 37 chr3 146749656 146750046 -80774532 + MLT1K LTR MaLR 75 567 -21 265 284 0 12 chr3 146750650 146750731 -80773847 + MER116 DNA Mariner 1 80 0 391 307 36 7 chr3 146751264 146751401 -80773177 + MIR SINE MIR 85 225 -37 377 279 86 0 chr3 146752354 146752494 -80772084 - Charlie2 DNA MER1_type -10 2852 2701 1101 197 71 44 chr3 146752525 146752819 -80771759 - AluJb SINE Alu 0 302 1 809 245 45 42 chr3 146752819 146752934 -80771644 - Charlie2 DNA MER1_type -147 2715 2602 2236 80 28 3 chr3 146752934 146753220 -80771358 - AluSq SINE Alu -20 293 1 2740 23 0 0 chr3 146753220 146753520 -80771058 - AluY SINE Alu -11 300 1 809 245 45 42 chr3 146753520 146753738 -80770840 - Charlie2 DNA MER1_type -259 2603 2380 606 201 107 20 chr3 146753742 146753891 -80770687 + FRAM SINE Alu 1 154 -22 1071 227 64 21 chr3 146753891 146753953 -80770625 - Charlie2 DNA MER1_type -493 2369 2311 1978 125 32 0 chr3 146753953 146754234 -80770344 - AluJb SINE Alu -22 290 1 1071 227 64 21 chr3 146754234 146754545 -80770033 - Charlie2 DNA MER1_type -551 2311 1980 241 222 37 25 chr3 146754552 146754633 -80769945 + L1MC5 LINE L1 7848 7929 -32 435 272 24 0 chr3 146754633 146754758 -80769820 - Charlie2 DNA MER1_type -870 1992 1865 929 191 23 0 chr3 146755191 146755364 -80769214 + FRAM SINE Alu 1 176 0 2548 38 3 0 chr3 146755394 146755686 -80768892 + AluY SINE Alu 1 293 -18 1008 252 70 24 chr3 146755701 146756074 -80768504 + L1MC4 LINE L1 7652 8041 -1 186 232 18 36 chr3 146756310 146756366 -80768212 - MIR3 SINE MIR -54 154 100 218 31 0 31 chr3 146756638 146756670 -80767908 + (TCCC)n Simple_repeat Simple_repeat 1 31 0 1523 263 109 28 chr3 146757534 146758052 -80766526 - L1ME1 LINE L1 0 6166 5579 2432 50 17 10 chr3 146758052 146758353 -80766225 - AluY SINE Alu -8 303 1 1523 263 109 28 chr3 146758353 146758511 -80766067 - L1ME1 LINE L1 -587 5579 5435 451 244 159 0 chr3 146759179 146759355 -80765223 - L2 LINE L2 -256 3057 2854 1034 114 0 0 chr3 146759380 146759520 -80765058 + AluJb SINE Alu 163 302 -10 633 175 6 62 chr3 146759522 146759682 -80764896 + MLT1B LTR MaLR 171 321 -69 365 187 27 0 chr3 146759703 146759778 -80764800 - MLT1B LTR MaLR -4 386 310 1392 136 34 75 chr3 146759778 146760043 -80764535 - AluJo SINE Alu -58 254 1 544 164 69 17 chr3 146760059 146760175 -80764403 - MLT1B LTR MaLR -268 122 1 186 122 61 61 chr3 146761378 146761427 -80763151 + L3 LINE CR1 1425 1473 -104 207 257 14 0 chr3 146762070 146762140 -80762438 + G-rich Low_complexity Low_complexity 4 74 0 391 209 87 70 chr3 146762179 146762351 -80762227 + L2 LINE L2 2909 3083 -189 269 263 38 0 chr3 146762675 146762755 -80761823 + MIR SINE MIR 77 159 -103 935 166 0 0 chr3 146763507 146763664 -80760914 - FRAM SINE Alu -9 157 1 329 244 77 0 chr3 146763671 146763749 -80760829 - L1ME4a LINE L1 -2 6119 6036 840 139 7 22 chr3 146763751 146763888 -80760690 + AluJo SINE Alu 1 135 -177 196 366 67 0 chr3 146764387 146764521 -80760057 - MIR3 SINE MIR -55 153 11 224 256 35 35 chr3 146766383 146766469 -80758109 - MIR SINE MIR -92 116 31 220 324 35 14 chr3 146766990 146767132 -80757446 - L2 LINE L2 -167 3105 2961 244 291 142 28 chr3 146768553 146768694 -80755884 + L2 LINE L2 3155 3311 -2 261 83 0 0 chr3 146768698 146768734 -80755844 + (GGGA)n Simple_repeat Simple_repeat 2 37 0 241 346 82 33 chr3 146769097 146769279 -80755299 - L2 LINE L2 -97 3175 2985 188 313 42 42 chr3 146769260 146769356 -80755222 - L2 LINE L2 -208 3064 2969 * 2365 82 7 0 chr3 146770071 146770376 -80754202 + AluSg SINE Alu 1 307 -3 777 212 92 0 chr3 146770376 146770571 -80754007 + MIR SINE MIR 41 259 -3 222 136 0 45 chr3 146770770 146770814 -80753764 - MIR SINE MIR -63 145 104 453 330 79 20 chr3 146770996 146771199 -80753379 - MIR SINE MIR 0 262 48 243 284 96 9 chr3 146771275 146771406 -80753172 + MIR SINE MIR 30 167 -70 211 319 44 62 chr3 146771633 146771746 -80752832 + MIR SINE MIR 103 213 -49 255 352 38 0 chr3 146772588 146772693 -80751885 + MIR3 SINE MIR 66 174 -34 226 294 64 2 chr3 146772895 146772995 -80751583 - MIR SINE MIR -60 148 45 211 339 8 74 chr3 146773043 146773113 -80751465 + MIR3 SINE MIR 80 127 -81 3306 52 5 0 chr3 146773113 146773521 -80751057 + L1PA5 LINE L1 5742 6151 -3 211 339 8 74 chr3 146773521 146773571 -80751007 + MIR3 SINE MIR 127 179 -29 995 248 84 9 chr3 146774059 146774382 -80750196 + MER113 DNA MER1_type? 64 410 -111 197 274 32 0 chr3 146774581 146774643 -80749935 - L2 LINE L2 0 3313 3250 199 129 0 0 chr3 146774747 146774778 -80749800 + MIR SINE MIR 114 144 -118 482 234 70 51 chr3 146775007 146775165 -80749413 - MIR SINE MIR -22 240 80 347 318 11 17 chr3 146775369 146775433 -80749145 + GA-rich Low_complexity Low_complexity 3 66 -114 236 71 48 0 chr3 146775433 146775475 -80749103 + (CAGAGA)n Simple_repeat Simple_repeat 3 46 0 347 318 11 17 chr3 146775475 146775589 -80748989 + GA-rich Low_complexity Low_complexity 66 180 0 536 291 41 12 chr3 146776124 146776296 -80748282 + MIR SINE MIR 53 229 -33 348 280 6 46 chr3 146776770 146776945 -80747633 + GA-rich Low_complexity Low_complexity 2 169 0 245 305 0 0 chr3 146777061 146777143 -80747435 + GA-rich Low_complexity Low_complexity 1 82 0 256 211 12 87 chr3 146777199 146777374 -80747204 + G-rich Low_complexity Low_complexity 1 183 -62 199 0 65 0 chr3 146777374 146777405 -80747173 + (CCCCCG)n Simple_repeat Simple_repeat 1 33 0 256 211 12 87 chr3 146777405 146777464 -80747114 + G-rich Low_complexity Low_complexity 183 245 0 26 82 0 0 chr3 146777476 146777537 -80747041 + GC_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr3 146777696 146777719 -80746859 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 146778068 146778091 -80746487 + GC_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 146778171 146778192 -80746386 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 146778613 146778637 -80745941 + GC_rich Low_complexity Low_complexity 1 24 0 357 75 0 0 chr3 146778900 146778953 -80745625 + (CGG)n Simple_repeat Simple_repeat 2 54 0 251 236 69 14 chr3 146779586 146779658 -80744920 - L2 LINE L2 0 3272 3197 * 844 266 62 0 chr3 146779656 146779882 -80744696 - MIR SINE MIR -21 241 2 976 261 37 12 chr3 146781219 146781460 -80743118 + MIR SINE MIR 16 262 0 199 284 258 22 chr3 146781586 146782022 -80742556 - L2 LINE L2 -10 3262 2714 329 278 11 11 chr3 146782028 146782118 -80742460 + MIR SINE MIR 115 204 -58 315 271 65 28 chr3 146782246 146782353 -80742225 - L2 LINE L2 0 3313 3203 324 235 88 10 chr3 146783663 146783765 -80740813 + MIR SINE MIR 79 188 -74 22 35 0 0 chr3 146783812 146783841 -80740737 + AT_rich Low_complexity Low_complexity 1 29 0 499 253 91 40 chr3 146784158 146784356 -80740222 - MIR SINE MIR 0 262 55 371 262 93 0 chr3 146784789 146784896 -80739682 + MIR SINE MIR 28 144 -118 504 317 88 15 chr3 146785244 146785449 -80739129 - MIR SINE MIR -18 244 25 220 179 0 0 chr3 146785518 146785557 -80739021 - MIR SINE MIR -118 144 106 221 295 93 41 chr3 146785863 146786207 -80738371 - L2 LINE L2 -157 3115 2680 194 286 0 0 chr3 146786276 146786318 -80738260 + MIR3 SINE MIR 148 189 -19 661 260 77 19 chr3 146786978 146787186 -80737392 + MIR SINE MIR 14 233 -29 398 237 160 17 chr3 146788054 146788230 -80736348 - MIR SINE MIR -10 252 48 212 71 0 0 chr3 146788231 146788259 -80736319 + MIR SINE MIR 117 144 -118 327 49 0 0 chr3 146788269 146788310 -80736268 + (TG)n Simple_repeat Simple_repeat 1 41 0 959 163 125 17 chr3 146789351 146789591 -80734987 - L1MD3 LINE L1 0 7995 7730 826 191 26 0 chr3 146789725 146789877 -80734701 - FRAM SINE Alu -9 167 12 30 0 0 0 chr3 146791483 146791513 -80733065 + AT_rich Low_complexity Low_complexity 1 30 0 731 281 104 27 chr3 146792117 146792483 -80732095 - L2 LINE L2 -337 2977 2584 436 283 33 44 chr3 146792602 146792660 -80731918 - MIR SINE MIR 0 262 205 1740 60 0 5 chr3 146792660 146792876 -80731702 - 7SLRNA srpRNA srpRNA -105 215 1 436 283 33 44 chr3 146792876 146792997 -80731581 - MIR SINE MIR -57 205 85 278 271 234 39 chr3 146793376 146793560 -80731018 + MIR SINE MIR 44 262 0 346 257 18 46 chr3 146795136 146795245 -80729333 + MIR SINE MIR 28 133 -129 281 306 56 9 chr3 146795736 146795844 -80728734 + MIR SINE MIR 32 144 -118 397 343 96 0 chr3 146795881 146796047 -80728531 - MIR SINE MIR -12 250 69 259 286 48 12 chr3 146796125 146796209 -80728369 + L2 LINE L2 3185 3271 -1 262 362 8 8 chr3 146796868 146796995 -80727583 + MIR SINE MIR 18 144 -118 259 241 75 65 chr3 146797071 146797209 -80727369 - MIR SINE MIR -39 169 27 315 289 44 30 chr3 146797682 146797817 -80726761 + L2 LINE L2 2915 3051 -221 847 282 35 4 chr3 146798404 146798631 -80725947 - MIR SINE MIR -1 261 28 675 215 346 0 chr3 146799054 146799504 -80725074 - L2 LINE L2 -1 3312 2718 313 305 76 8 chr3 146800358 146800476 -80724102 - L3 LINE CR1 -103 1474 1349 347 358 68 6 chr3 146800700 146800862 -80723716 - L1ME4a LINE L1 -236 5885 5714 266 301 96 15 chr3 146800876 146801012 -80723566 - L1ME4a LINE L1 -444 5677 5531 218 360 11 22 chr3 146801068 146801157 -80723421 - MIR SINE MIR -101 107 20 228 245 128 21 chr3 146802406 146802500 -80722078 - L2 LINE L2 -16 3256 3153 533 258 119 0 chr3 146802514 146802665 -80721913 + MIR SINE MIR 78 246 -16 192 273 136 23 chr3 146802746 146802834 -80721744 - L2 LINE L2 -221 3051 2954 611 251 29 23 chr3 146804092 146804263 -80720315 + MIR SINE MIR 88 259 -3 301 153 28 0 chr3 146805007 146805079 -80719499 + CT-rich Low_complexity Low_complexity 1 74 0 205 338 50 0 chr3 146805376 146805456 -80719122 - MIR3 SINE MIR -14 194 111 210 280 80 0 chr3 146805539 146805614 -80718964 + MIR SINE MIR 92 172 -90 373 257 95 34 chr3 146806316 146806464 -80718114 - MIR3 SINE MIR -35 173 17 403 299 192 9 chr3 146807410 146807619 -80716959 - MIR SINE MIR 0 262 15 267 297 66 38 chr3 146807833 146808045 -80716533 - L2 LINE L2 -219 3053 2836 303 355 76 0 chr3 146809370 146809542 -80715036 + MIR SINE MIR 46 230 -32 244 204 54 86 chr3 146810010 146810103 -80714475 - L2 LINE L2 -70 3243 3154 292 211 9 13 chr3 146811720 146811800 -80712778 + MIR SINE MIR 74 141 -67 302 278 33 53 chr3 146813487 146813638 -80710940 - MIR SINE MIR -29 233 86 346 311 195 0 chr3 146813781 146813976 -80710602 - L3 LINE CR1 -113 1464 1234 666 298 41 23 chr3 146814020 146814238 -80710340 - MIR SINE MIR 0 262 41 3405 183 24 35 chr3 146814738 146815377 -80709201 + L1MB8 LINE L1 5474 6106 -72 2037 148 7 0 chr3 146815377 146815682 -80708896 + AluJb SINE Alu 1 307 -5 3405 183 24 35 chr3 146815682 146815749 -80708829 + L1MB8 LINE L1 6106 6172 -6 456 238 121 90 chr3 146815751 146815974 -80708604 - L1ME4a LINE L1 -11 6110 5881 361 184 88 26 chr3 146815979 146816093 -80708485 - L1ME4a LINE L1 -5 6116 5996 232 32 0 0 chr3 146816140 146816171 -80708407 - U7 snRNA snRNA -31 32 2 248 282 122 30 chr3 146817200 146817331 -80707247 + L2 LINE L2 2642 2784 -530 215 224 0 20 chr3 146817816 146817865 -80706713 + L3 LINE CR1 1416 1463 -114 248 263 21 63 chr3 146818059 146818154 -80706424 + L3 LINE CR1 1396 1486 -91 377 278 133 52 chr3 146819194 146819539 -80705039 - L2 LINE L2 -82 3190 2818 864 116 0 36 chr3 146819724 146819862 -80704716 - FLAM_C SINE Alu -10 133 1 371 255 29 0 chr3 146819863 146819965 -80704613 + MIR SINE MIR 42 146 -62 242 206 113 31 chr3 146820285 146820382 -80704196 + MER113 DNA MER1_type? 27 131 -390 526 335 34 0 chr3 146820608 146820784 -80703794 + MIR SINE MIR 12 193 -69 1967 142 10 0 chr3 146821699 146821995 -80702583 - AluJo SINE Alu -13 299 1 309 268 14 0 chr3 146822157 146822228 -80702350 - MIR SINE MIR -59 149 78 248 234 0 13 chr3 146823199 146823276 -80701302 + CT-rich Low_complexity Low_complexity 1 76 0 266 180 6 75 chr3 146823295 146823456 -80701122 + (TCTCTG)n Simple_repeat Simple_repeat 2 151 0 240 263 53 32 chr3 146824142 146824237 -80700341 - MIR SINE MIR -82 126 30 476 271 13 32 chr3 146824654 146824809 -80699769 + MIR SINE MIR 5 156 -106 379 292 107 17 chr3 146824826 146825004 -80699574 - MIR SINE MIR -33 229 36 212 208 13 39 chr3 146826288 146826365 -80698213 - L2 LINE L2 -285 2987 2913 314 315 34 20 chr3 146829339 146829485 -80695093 - MIR SINE MIR -86 176 29 263 291 43 17 chr3 146830280 146830397 -80694181 - L1ME4a LINE L1 -205 5916 5797 526 332 79 15 chr3 146831160 146831529 -80693049 + L2 LINE L2 2398 2845 -469 1111 286 101 30 chr3 146831558 146832033 -80692545 - MLT1G1 LTR MaLR -10 585 77 452 302 27 7 chr3 146832052 146832201 -80692377 + L2 LINE L2 2830 2981 -332 190 325 117 8 chr3 146832466 146832586 -80691992 + L2 LINE L2 2957 3089 -183 196 281 35 0 chr3 146832663 146832720 -80691858 + L2 LINE L2 3214 3272 0 268 274 138 56 chr3 146833124 146833248 -80691330 + MIR SINE MIR 22 154 -62 451 278 78 39 chr3 146833545 146833725 -80690853 + MIR SINE MIR 25 211 -51 1317 179 9 0 chr3 146833810 146834039 -80690539 - AluJb SINE Alu -16 296 66 244 304 22 94 chr3 146834151 146834251 -80690327 + L2 LINE L2 2816 2899 -373 2094 136 0 0 chr3 146834251 146834553 -80690025 - AluSx SINE Alu -10 302 1 244 304 22 94 chr3 146834553 146834633 -80689945 + L2 LINE L2 2899 2983 -289 221 296 83 0 chr3 146836391 146836499 -80688079 - L2 LINE L2 -229 3043 2927 2136 110 7 0 chr3 146837008 146837307 -80687271 - AluSg SINE Alu -9 301 1 780 259 120 41 chr3 146837422 146837881 -80686697 + L1MC5 LINE L1 7413 7907 -54 1657 179 38 3 chr3 146837882 146838056 -80686522 - AluJb SINE Alu -11 301 112 486 49 0 0 chr3 146838056 146838117 -80686461 + (TTA)n Simple_repeat Simple_repeat 2 62 0 1657 179 38 3 chr3 146838117 146838233 -80686345 - AluJb SINE Alu -200 112 1 2806 155 70 18 chr3 146838247 146838794 -80685784 + L1MB7 LINE L1 5602 6176 -8 1287 167 0 5 chr3 146838955 146839165 -80685413 + AluJb SINE Alu 90 298 -14 228 267 32 16 chr3 146839353 146839444 -80685134 + MIR3 SINE MIR 90 183 -25 354 286 103 60 chr3 146839897 146840246 -80684332 + L2 LINE L2 2722 3116 -156 420 315 73 73 chr3 146840264 146840496 -80684082 + L2 LINE L2 2979 3210 -62 204 130 74 0 chr3 146840763 146840817 -80683761 + (TGGG)n Simple_repeat Simple_repeat 3 60 0 306 283 38 9 chr3 146841196 146841302 -80683276 + MIR3 SINE MIR 58 166 -42 230 322 35 29 chr3 146841631 146841802 -80682776 + L1MC/D LINE L1 5309 5480 -879 2121 110 3 0 chr3 146841888 146842215 -80682363 + AluSq SINE Alu 6 333 0 1985 151 0 16 chr3 146842243 146842560 -80682018 + AluJb SINE Alu 1 312 0 557 354 102 0 chr3 146842561 146842925 -80681653 + L1ME3 LINE L1 5429 5829 -333 231 36 0 0 chr3 146842969 146842997 -80681581 + (TG)n Simple_repeat Simple_repeat 1 28 0 28 29 0 0 chr3 146843012 146843047 -80681531 + AT_rich Low_complexity Low_complexity 1 35 0 230 298 117 0 chr3 146843238 146843332 -80681246 + L2 LINE L2 2687 2791 -523 431 238 176 60 chr3 146843437 146843515 -80681063 + MLT1H LTR MaLR 1 69 -480 1725 157 33 10 chr3 146843515 146843698 -80680880 - AluJo SINE Alu -5 307 113 672 102 0 0 chr3 146843698 146843796 -80680782 + (TA)n Simple_repeat Simple_repeat 2 99 0 1725 157 33 10 chr3 146843796 146843912 -80680666 - AluJo SINE Alu -199 113 1 431 238 176 60 chr3 146843912 146844274 -80680304 + MLT1H LTR MaLR 69 549 0 621 301 43 37 chr3 146844290 146844589 -80679989 + L2 LINE L2 2950 3250 -22 2170 137 0 3 chr3 146845363 146845676 -80678902 + AluSx SINE Alu 1 312 0 338 105 0 18 chr3 146845676 146845733 -80678845 + (GGGA)n Simple_repeat Simple_repeat 1 56 0 817 311 48 26 chr3 146845748 146846211 -80678367 - MLT1J LTR MaLR -38 473 1 333 297 135 14 chr3 146846313 146846461 -80678117 - MIR SINE MIR -6 256 91 1659 193 4 0 chr3 146846462 146846900 -80677678 + AluJo SINE Alu 3 441 0 351 250 171 23 chr3 146847618 146847794 -80676784 + MLT1K LTR MaLR 3 204 -384 919 24 81 0 chr3 146847809 146847933 -80676645 - MER85 DNA T2_type -5 134 1 406 241 71 9 chr3 146848006 146848118 -80676460 + MLT1K LTR MaLR 468 586 -2 190 371 83 23 chr3 146848346 146848416 -80676162 - MIR SINE MIR -27 235 171 2127 104 0 0 chr3 146848416 146848756 -80675822 - AluSg SINE Alu 0 340 1 190 371 83 23 chr3 146848756 146848816 -80675762 - MIR SINE MIR -91 171 96 230 384 5 49 chr3 146849832 146850017 -80674561 - MIR SINE MIR 0 262 86 247 290 0 0 chr3 146850097 146850159 -80674419 - L2 LINE L2 -1 3312 3251 27 29 0 0 chr3 146850331 146850365 -80674213 + AT_rich Low_complexity Low_complexity 1 34 0 436 288 96 20 chr3 146850836 146850982 -80673596 - MIR SINE MIR -44 218 62 470 229 79 21 chr3 146851170 146851310 -80673268 - MER5A DNA MER1_type -6 183 36 518 0 16 0 chr3 146853635 146853697 -80670881 + (TG)n Simple_repeat Simple_repeat 2 64 0 248 254 15 0 chr3 146853943 146854010 -80670568 + MER94 DNA DNA 2 69 -65 273 342 108 0 chr3 146854264 146854384 -80670194 + MIR3 SINE MIR 13 145 -63 181 340 97 0 chr3 146854621 146854724 -80669854 + L2 LINE L2 3134 3246 -26 216 327 19 48 chr3 146854766 146854870 -80669708 + MIR SINE MIR 45 145 -63 371 289 26 40 chr3 146856877 146857029 -80667549 - L2 LINE L2 -5 3308 3159 335 339 17 8 chr3 146857618 146857736 -80666842 + L2 LINE L2 3122 3240 -32 376 165 153 0 chr3 146857744 146857829 -80666749 + L2 LINE L2 3216 3313 0 1759 122 55 0 chr3 146858000 146858271 -80666307 - AluJo SINE Alu -26 286 1 361 252 86 66 chr3 146858315 146858466 -80666112 - MIR3 SINE MIR -5 203 50 376 200 11 33 chr3 146858962 146859052 -80665526 + MIR SINE MIR 114 201 -61 256 221 15 15 chr3 146859074 146859142 -80665436 + L2 LINE L2 2995 3062 -251 1987 143 0 0 chr3 146859172 146859458 -80665120 - AluSx SINE Alu -26 286 1 1451 158 6 88 chr3 146859460 146859777 -80664801 - AluJo SINE Alu -21 291 1 967 132 17 35 chr3 146859848 146860022 -80664556 - AluJo SINE Alu -23 289 119 275 224 171 0 chr3 146860057 146860133 -80664445 + L2 LINE L2 3183 3271 -1 270 81 0 0 chr3 146860502 146860539 -80664039 + (TCC)n Simple_repeat Simple_repeat 3 39 0 223 322 129 50 chr3 146860698 146860900 -80663678 - L2 LINE L2 -16 3256 3039 758 149 9 0 chr3 146861418 146861532 -80663046 - AluJo SINE Alu -187 115 1 811 138 7 36 chr3 146861603 146861741 -80662837 - FRAM SINE Alu -23 153 20 281 341 35 35 chr3 146865946 146866119 -80658459 + MLT1K LTR MaLR 251 423 -165 336 173 0 27 chr3 146866901 146867011 -80657567 + (TG)n Simple_repeat Simple_repeat 2 108 0 198 0 0 0 chr3 146867144 146867166 -80657412 + (TG)n Simple_repeat Simple_repeat 1 22 0 370 243 5 53 chr3 146867200 146867389 -80657189 + (TG)n Simple_repeat Simple_repeat 1 180 0 270 0 0 0 chr3 146867479 146867509 -80657069 + (TG)n Simple_repeat Simple_repeat 1 30 0 305 255 0 35 chr3 146867520 146867661 -80656917 + (TG)n Simple_repeat Simple_repeat 1 136 0 264 287 6 33 chr3 146867701 146867882 -80656696 + (TG)n Simple_repeat Simple_repeat 1 176 0 198 0 0 0 chr3 146867895 146867917 -80656661 + (TG)n Simple_repeat Simple_repeat 1 22 0 323 276 11 28 chr3 146867972 146868153 -80656425 + (TG)n Simple_repeat Simple_repeat 1 178 0 245 153 0 17 chr3 146868166 146868225 -80656353 + (TG)n Simple_repeat Simple_repeat 1 58 0 296 309 251 5 chr3 146868999 146869190 -80655388 - MIR SINE MIR -8 254 17 499 296 100 30 chr3 146872002 146872232 -80652346 - MIR SINE MIR -15 247 2 418 254 273 31 chr3 146873060 146873415 -80651163 + L2 LINE L2 2832 3272 0 855 160 32 6 chr3 146873978 146874134 -80650444 + FRAM SINE Alu 1 160 -16 525 238 95 0 chr3 146874223 146874349 -80650229 - MIR SINE MIR -26 236 99 182 365 0 0 chr3 146874438 146874490 -80650088 + MIR SINE MIR 16 67 -195 8394 90 44 0 chr3 146874490 146875686 -80648892 + HSMAR1 DNA Mariner 39 1287 0 496 233 48 34 chr3 146875697 146875843 -80648735 + MIR SINE MIR 107 254 -8 332 283 80 7 chr3 146875937 146876075 -80648503 - MIR3 SINE MIR 0 208 61 22 0 0 0 chr3 146877332 146877354 -80647224 + AT_rich Low_complexity Low_complexity 1 22 0 241 298 33 41 chr3 146878213 146878334 -80646244 - MIR SINE MIR -65 197 78 209 235 73 29 chr3 146878461 146878529 -80646049 - L2 LINE L2 -9 3304 3234 198 240 55 32 chr3 146878960 146879044 -80645534 + MIR SINE MIR 38 120 -92 661 259 0 49 chr3 146879339 146879524 -80645054 + MIR SINE MIR 45 220 -42 292 259 36 27 chr3 146881009 146881121 -80643457 + L2 LINE L2 3160 3272 0 235 314 59 25 chr3 146881520 146881638 -80642940 + L2 LINE L2 3151 3272 0 279 353 54 24 chr3 146881744 146881911 -80642667 - MIR SINE MIR -1 261 90 342 321 96 11 chr3 146883699 146883904 -80640674 + MIR SINE MIR 41 261 -1 1649 144 53 3 chr3 146886919 146887204 -80637374 - AluJb SINE Alu -13 299 1 278 322 169 11 chr3 146889258 146889441 -80635137 - MIR SINE MIR -19 243 32 198 0 0 0 chr3 146889493 146889515 -80635063 + (CA)n Simple_repeat Simple_repeat 2 23 0 774 211 0 0 chr3 146889855 146889988 -80634590 + FLAM_C SINE Alu 1 133 0 418 333 67 11 chr3 146890593 146890773 -80633805 + MIR SINE MIR 21 210 -52 197 341 61 0 chr3 146890833 146890915 -80633663 + L2 LINE L2 3184 3270 -2 1741 177 6 3 chr3 146891083 146891394 -80633184 + AluJb SINE Alu 1 312 0 212 264 132 28 chr3 146891699 146891805 -80632773 - MIR SINE MIR -68 194 78 837 157 0 50 chr3 146894039 146894179 -80630399 + AluJo SINE Alu 2 134 -178 2390 63 0 3 chr3 146894341 146894644 -80629934 - AluY SINE Alu -9 302 1 268 311 72 19 chr3 146894778 146894957 -80629621 - MIR SINE MIR -43 219 29 212 274 16 16 chr3 146895420 146895482 -80629096 - MIR SINE MIR 0 262 201 411 289 108 12 chr3 146895538 146895704 -80628874 - MIR SINE MIR -54 208 27 263 320 54 54 chr3 146896119 146896341 -80628237 + L2 LINE L2 2843 3064 -208 184 205 26 0 chr3 146896557 146896596 -80627982 - MIR SINE MIR -83 125 86 336 307 55 0 chr3 146896739 146896866 -80627712 - MIR SINE MIR -82 180 47 212 300 22 33 chr3 146897299 146897389 -80627189 + MIR SINE MIR 24 112 -150 333 280 73 20 chr3 146897783 146897933 -80626645 - MIR3 SINE MIR -9 199 42 515 331 53 11 chr3 146898898 146899164 -80625414 + L1MD1 LINE L1 5540 5816 -305 800 191 33 75 chr3 146899168 146899409 -80625169 + L1MD1 LINE L1 5991 6221 -21 247 327 17 7 chr3 146900293 146900416 -80624162 - MIR SINE MIR -77 131 6 433 283 111 24 chr3 146901323 146901554 -80623024 - MIR SINE MIR -6 256 4 1011 171 6 6 chr3 146903127 146903291 -80621287 - FAM SINE Alu -9 166 3 185 0 40 0 chr3 146903306 146903331 -80621247 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 402 291 99 7 chr3 146903374 146903515 -80621063 - MIR SINE MIR -87 175 22 1776 138 16 62 chr3 146904741 146905061 -80619517 - AluJo SINE Alu -7 305 1 1216 188 56 81 chr3 146905453 146905773 -80618805 + AluJb SINE Alu 1 312 0 1115 161 0 42 chr3 146908364 146908538 -80616040 - AluJo SINE Alu -8 304 137 1902 161 0 0 chr3 146908538 146908830 -80615748 - AluJb SINE Alu -20 292 1 1115 161 0 42 chr3 146908830 146908847 -80615731 - AluJo SINE Alu -175 137 121 616 128 36 5 chr3 146908848 146909040 -80615538 - L1M4 LINE L1 -572 5612 5369 1321 201 25 40 chr3 146909049 146909327 -80615251 - AluJo SINE Alu -38 274 1 525 154 20 2 chr3 146909337 146909445 -80615133 - L1M4 LINE L1 -867 5279 5172 721 226 54 25 chr3 146910219 146910423 -80614155 + L1ME LINE L1 10 219 -5851 1354 251 82 60 chr3 146910443 146910890 -80613688 + L1ME LINE L1 291 726 -5500 1366 206 27 7 chr3 146910890 146911182 -80613396 - AluJo SINE Alu -14 298 1 1354 251 82 60 chr3 146911182 146911636 -80612942 + L1ME LINE L1 726 1244 -4982 1700 181 3 42 chr3 146911736 146912045 -80612533 + AluJo SINE Alu 1 297 -15 1003 230 62 0 chr3 146912113 146912339 -80612239 + MIR SINE MIR 23 262 0 279 269 26 26 chr3 146912702 146912780 -80611798 + L2 LINE L2 3230 3307 -6 2231 109 3 10 chr3 146913328 146913631 -80610947 + AluSx SINE Alu 1 301 -11 2449 62 0 7 chr3 146913636 146913927 -80610651 + AluY SINE Alu 1 289 -22 279 0 0 0 chr3 146913931 146913962 -80610616 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 308 351 56 63 chr3 146914008 146914418 -80610160 + L2 LINE L2 2865 3271 -1 846 271 8 34 chr3 146914445 146914681 -80609897 + MIR SINE MIR 18 247 -15 2138 120 3 3 chr3 146915564 146915856 -80608722 + AluSx SINE Alu 8 299 -13 556 243 171 29 chr3 146916638 146916947 -80607631 + L1ME4a LINE L1 5731 6083 -38 2259 134 0 3 chr3 146917398 146917711 -80606867 + AluSx SINE Alu 1 312 0 2181 88 0 111 chr3 146918092 146918262 -80606316 + AluSx SINE Alu 1 116 -196 2862 7 0 0 chr3 146918262 146918564 -80606014 + AluYb8 SINE Alu 4 305 -13 2181 88 0 111 chr3 146918564 146918736 -80605842 + AluSx SINE Alu 116 305 -7 487 195 16 0 chr3 146919029 146919152 -80605426 + (CA)n Simple_repeat Simple_repeat 1 125 0 217 286 63 16 chr3 146919927 146919990 -80604588 + L2 LINE L2 3243 3308 -5 715 307 35 26 chr3 146920018 146920249 -80604329 - MIR SINE MIR 0 262 30 1280 203 103 0 chr3 146920677 146920998 -80603580 + L1MD2 LINE L1 5795 6148 -211 519 279 14 0 chr3 146920999 146921146 -80603432 + L1MD2 LINE L1 6195 6343 -16 581 247 141 48 chr3 146921660 146921887 -80602691 + MIR SINE MIR 13 260 -2 245 317 81 41 chr3 146921913 146922036 -80602542 + L2 LINE L2 3143 3270 -2 225 266 21 64 chr3 146922078 146922172 -80602406 - MIR SINE MIR -65 197 108 187 204 0 23 chr3 146922546 146922590 -80601988 - L2 LINE L2 -205 3067 3025 372 183 43 43 chr3 146923169 146923262 -80601316 - FLAM_C SINE Alu -8 125 33 2497 138 6 105 chr3 146923497 146923641 -80600937 + L1MB2 LINE L1 5683 5840 -331 581 180 171 0 chr3 146923641 146923752 -80600826 + FLAM_C SINE Alu 2 131 -2 2497 138 6 105 chr3 146923752 146924150 -80600428 + L1MB2 LINE L1 5840 6171 0 1303 196 68 38 chr3 146924150 146924416 -80600162 + AluJb SINE Alu 1 274 -38 1092 88 18 0 chr3 146924420 146924591 -80599987 + (GGAA)n Simple_repeat Simple_repeat 3 176 0 399 393 56 43 chr3 146924594 146924672 -80599906 - L2 LINE L2 -13 3259 3184 1840 70 0 0 chr3 146924672 146924910 -80599668 + AluY SINE Alu 68 305 0 399 393 56 43 chr3 146924910 146925133 -80599445 - L2 LINE L2 -88 3184 2953 195 308 63 44 chr3 146925145 146925304 -80599274 - L2 LINE L2 -840 2474 2313 * 224 309 0 36 chr3 146925272 146925356 -80599222 + MIR SINE MIR 182 262 0 715 282 109 38 chr3 146925781 146926004 -80598574 - L2 LINE L2 -3 3310 3104 1309 132 81 33 chr3 146926004 146926156 -80598422 - L1MA7 LINE L1 0 6291 6119 2413 72 3 13 chr3 146926156 146926461 -80598117 + AluY SINE Alu 1 302 -9 1309 132 81 33 chr3 146926461 146926581 -80597997 - L1MA7 LINE L1 -172 6119 6006 715 282 109 38 chr3 146926581 146926957 -80597621 - L2 LINE L2 -209 3104 2653 438 286 59 0 chr3 146927150 146927269 -80597309 + MIR SINE MIR 85 210 -52 2099 96 36 4 chr3 146927270 146927551 -80597027 - AluSx SINE Alu -22 290 1 2141 130 0 0 chr3 146927552 146927837 -80596741 - AluSg SINE Alu -25 285 1 491 301 72 18 chr3 146927970 146928136 -80596442 + MIR SINE MIR 11 185 -77 328 256 33 0 chr3 146928150 146928240 -80596338 + AluY SINE Alu 2 94 -207 285 29 0 0 chr3 146928261 146928295 -80596283 + (TCC)n Simple_repeat Simple_repeat 2 35 0 193 251 11 34 chr3 146928360 146928535 -80596043 + CT-rich Low_complexity Low_complexity 2 172 0 213 338 0 0 chr3 146928596 146928673 -80595905 + CT-rich Low_complexity Low_complexity 1 77 0 270 261 15 56 chr3 146928780 146928989 -80595589 + CT-rich Low_complexity Low_complexity 1 200 0 477 207 0 0 chr3 146929453 146929535 -80595043 - AluS SINE Alu -229 83 2 1757 163 7 0 chr3 146929590 146929912 -80594666 + AluSq SINE Alu 1 324 0 1108 208 0 5 chr3 146930113 146930315 -80594263 - AluJo SINE Alu -22 290 90 2438 144 71 26 chr3 146930472 146931006 -80593572 - L1MB8 LINE L1 0 6178 5621 1726 179 38 3 chr3 146931031 146931147 -80593431 + AluJb SINE Alu 1 112 -200 459 52 0 0 chr3 146931147 146931205 -80593373 + (TAA)n Simple_repeat Simple_repeat 2 59 0 1726 179 38 3 chr3 146931205 146931379 -80593199 + AluJb SINE Alu 112 301 -11 782 261 120 41 chr3 146931380 146931839 -80592739 - L1MC5 LINE L1 -54 7907 7413 2144 130 0 0 chr3 146931954 146932239 -80592339 + AluSg SINE Alu 1 285 -25 2099 96 36 4 chr3 146932240 146932521 -80592057 + AluSx SINE Alu 1 290 -22 438 286 59 0 chr3 146932522 146932641 -80591937 - MIR SINE MIR -52 210 85 525 276 120 12 chr3 146932834 146933171 -80591407 + L2 LINE L2 2653 3032 -240 1927 141 10 7 chr3 146937237 146937535 -80587043 + AluSx SINE Alu 1 299 -13 227 218 36 0 chr3 146937694 146937749 -80586829 - AluJ/monomer SINE Alu 0 302 246 1369 179 9 0 chr3 146937749 146937978 -80586600 + AluJb SINE Alu 66 296 -16 202 308 58 19 chr3 146938091 146938195 -80586383 - MIR SINE MIR -75 187 80 21 36 0 0 chr3 146938353 146938381 -80586197 + GC_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 146940094 146940116 -80584462 + GC_rich Low_complexity Low_complexity 1 22 0 840 254 19 5 chr3 146940358 146940563 -80584015 + MIR SINE MIR 17 224 -38 256 268 67 38 chr3 146940945 146941079 -80583499 + MIR SINE MIR 35 182 -75 246 131 49 82 chr3 146941182 146941243 -80583335 - MER117 DNA MER1_type -34 163 105 265 264 221 0 chr3 146941488 146941628 -80582950 - MIR SINE MIR 0 262 92 319 183 24 12 chr3 146942727 146942809 -80581769 - L1MD1 LINE L1 -11 6231 6149 581 202 77 33 chr3 146943276 146943459 -80581119 + MLT1B LTR MaLR 197 387 -3 2288 112 0 0 chr3 146943741 146944036 -80580542 + AluSx SINE Alu 1 295 -17 2015 130 31 0 chr3 146945288 146945581 -80578997 + AluJb SINE Alu 11 312 0 1157 213 23 0 chr3 146945747 146945963 -80578615 + MER58A DNA MER1_type 4 224 0 229 241 161 54 chr3 146945963 146946018 -80578560 + MLT1J LTR MaLR 445 511 0 232 222 14 14 chr3 146946044 146946107 -80578471 + (TA)n Simple_repeat Simple_repeat 1 66 -6 1696 192 6 10 chr3 146946107 146946420 -80578158 - AluJo SINE Alu 0 312 1 232 222 14 14 chr3 146946420 146946428 -80578150 + (TA)n Simple_repeat Simple_repeat 65 72 0 1702 168 0 4 chr3 146946429 146946726 -80577852 - AluJo SINE Alu -14 298 30 478 219 92 79 chr3 146946729 146946893 -80577685 + L2 LINE L2 3148 3313 0 255 321 0 0 chr3 146946908 146946992 -80577586 - L2 LINE L2 -1 3312 3229 282 290 35 89 chr3 146947080 146947249 -80577329 - MIR SINE MIR -82 180 21 285 235 62 37 chr3 146947932 146948013 -80576565 + MIR SINE MIR 51 133 -75 249 292 103 49 chr3 146947979 146948164 -80576414 + L2 LINE L2 1720 1914 -1400 * 1939 115 0 32 chr3 146948243 146948555 -80576023 + AluSx SINE Alu 1 302 -10 1604 135 12 4 chr3 146948566 146948811 -80575767 + AluSx SINE Alu 34 280 -32 838 191 13 0 chr3 146948843 146948995 -80575583 + FAM SINE Alu 1 154 -31 447 52 0 0 chr3 146949026 146949084 -80575494 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 614 236 99 26 chr3 146949110 146949412 -80575166 + L2 LINE L2 2743 3059 -254 406 241 93 9 chr3 146949423 146949531 -80575047 + L2 LINE L2 3197 3313 0 295 287 79 10 chr3 146949582 146949683 -80574895 + MIR SINE MIR 58 165 -97 3933 108 28 5 chr3 146949817 146950383 -80574195 + LTR19B LTR ERV1 2 580 0 200 310 162 41 chr3 146952087 146952284 -80572294 + L2 LINE L2 2818 3038 -234 1754 141 0 44 chr3 146952885 146953029 -80571549 + AluJo SINE Alu 1 150 -162 2324 83 0 0 chr3 146953029 146953330 -80571248 + AluY SINE Alu 1 301 -10 1754 141 0 44 chr3 146953330 146953505 -80571073 + AluJo SINE Alu 150 306 -6 2319 73 0 6 chr3 146953512 146953825 -80570753 + AluY SINE Alu 1 311 0 409 290 184 27 chr3 146953830 146954123 -80570455 - L2 LINE L2 -987 2327 1989 * 675 363 56 25 chr3 146954016 146954424 -80570154 + L3 LINE CR1 1136 1556 -21 343 308 56 68 chr3 146954665 146955003 -80569575 - L2 LINE L2 -356 2958 2625 886 82 31 6 chr3 146955618 146955777 -80568801 + (GAAA)n Simple_repeat Simple_repeat 2 164 0 285 271 181 40 chr3 146956509 146956686 -80567892 + MLT1K LTR MaLR 3 204 -384 946 41 98 0 chr3 146956701 146956823 -80567755 - MER85 DNA T2_type -5 134 1 436 241 71 9 chr3 146956896 146957008 -80567570 + MLT1K LTR MaLR 468 586 -2 2024 113 0 0 chr3 146957306 146957648 -80566930 - AluSx SINE Alu 0 342 1 647 128 36 5 chr3 146957666 146957858 -80566720 - L1M4 LINE L1 -572 5612 5369 1188 201 25 40 chr3 146957867 146958145 -80566433 - AluJo SINE Alu -38 274 1 551 144 20 2 chr3 146958155 146958263 -80566315 - L1M4 LINE L1 -867 5279 5172 500 297 88 6 chr3 146958554 146958736 -80565842 + MIR SINE MIR 60 256 -6 202 244 0 22 chr3 146958703 146958748 -80565830 + L2 LINE L2 3228 3271 -1 * 205 311 49 41 chr3 146959011 146959133 -80565445 - L2 LINE L2 -557 2757 2635 204 226 0 0 chr3 146959177 146959230 -80565348 + T-rich Low_complexity Low_complexity 1 53 0 270 188 42 0 chr3 146959631 146959679 -80564899 + Charlie8 DNA MER1_type 25 74 -2343 1375 255 85 61 chr3 146959931 146960384 -80564194 - L1ME LINE L1 -4982 1088 725 1348 203 31 7 chr3 146960384 146960674 -80563904 + AluJo SINE Alu 2 298 -4 1375 255 85 61 chr3 146960674 146961120 -80563458 - L1ME LINE L1 -5345 725 291 780 230 54 25 chr3 146961140 146961344 -80563234 - L1ME LINE L1 -5851 219 10 216 0 0 0 chr3 146961805 146961829 -80562749 + (A)n Simple_repeat Simple_repeat 1 24 0 406 348 86 48 chr3 146961849 146962246 -80562332 + L3b LINE CR1 1124 1535 -48 245 323 128 45 chr3 146963016 146963149 -80561429 - L2 LINE L2 -10 3262 3119 346 370 0 0 chr3 146963807 146963980 -80560598 + G-rich Low_complexity Low_complexity 1 173 0 1595 144 87 10 chr3 146964010 146964322 -80560256 + Tigger2 DNA MER2_type 2372 2707 -11 2288 90 0 0 chr3 146964461 146964761 -80559817 + AluSg SINE Alu 1 300 -10 334 316 151 34 chr3 146964910 146965116 -80559462 + MIR SINE MIR 2 231 -31 399 41 0 0 chr3 146965369 146965418 -80559160 + (CA)n Simple_repeat Simple_repeat 2 50 0 344 132 0 0 chr3 146965518 146965571 -80559007 - Alu SINE Alu 0 308 256 587 143 40 87 chr3 146965571 146965697 -80558881 - AluJo/FLAM SINE Alu -191 121 2 262 280 13 13 chr3 146965794 146965869 -80558709 + Charlie4 DNA MER1_type 1883 1957 -4 303 303 92 28 chr3 146965959 146966101 -80558477 - MIR SINE MIR -111 151 1 181 245 122 0 chr3 146966075 146966124 -80558454 - L3 LINE CR1 -236 1341 1287 * 1986 263 159 13 chr3 146966134 146966833 -80557745 + L2 LINE L2 841 1641 -1673 1627 247 107 77 chr3 146966833 146967788 -80556790 + L2 LINE L2 2334 3311 -2 1562 170 0 74 chr3 146968510 146968833 -80555745 + AluJo SINE Alu 1 299 -13 2200 75 0 0 chr3 146968913 146969194 -80555384 + AluY SINE Alu 1 281 -30 577 330 86 48 chr3 146969239 146969636 -80554942 + L3b LINE CR1 1124 1535 -48 224 328 142 44 chr3 146970404 146970537 -80554041 - L2 LINE L2 -10 3303 3184 654 192 52 23 chr3 146970537 146970709 -80553869 + MER104 DNA MER2_type 1 177 -3 224 328 142 44 chr3 146970709 146970776 -80553802 - L2 LINE L2 -129 3184 3125 1913 177 34 136 chr3 146970776 146970934 -80553644 + LTR9 LTR ERV1 1 174 -438 2073 110 3 22 chr3 146970934 146971252 -80553326 + AluSx SINE Alu 1 312 0 1913 177 34 136 chr3 146971252 146971775 -80552803 + LTR9 LTR ERV1 174 612 0 224 328 142 44 chr3 146971775 146971911 -80552667 - L2 LINE L2 -188 3125 2933 1079 141 102 102 chr3 146971932 146972120 -80552458 + MER4B LTR ERV1 1 191 -419 2076 83 11 0 chr3 146972120 146972396 -80552182 + AluSg SINE Alu 1 279 -31 1079 141 102 102 chr3 146972396 146972511 -80552067 + MER4B LTR ERV1 190 304 -306 338 271 123 25 chr3 146973285 146973407 -80551171 + MIR3 SINE MIR 56 189 -19 310 277 149 20 chr3 146973643 146973791 -80550787 - MIR SINE MIR -73 189 23 296 295 21 21 chr3 146973911 146974006 -80550572 + MIR3 SINE MIR 113 207 -1 23 0 0 0 chr3 146974022 146974045 -80550533 + AT_rich Low_complexity Low_complexity 1 23 0 1372 172 0 88 chr3 146974102 146974421 -80550157 - AluJb SINE Alu -21 291 1 214 222 133 56 chr3 146974496 146974586 -80549992 + MIR SINE MIR 95 191 -71 265 182 18 0 chr3 146975207 146975262 -80549316 + Charlie8 DNA MER1_type 2362 2417 0 787 273 56 0 chr3 146975278 146975494 -80549084 + MIR SINE MIR 7 234 -28 871 220 75 88 chr3 146975758 146976199 -80548379 - MER113 DNA MER1_type? -51 470 36 21 0 0 0 chr3 146976865 146976886 -80547692 + AT_rich Low_complexity Low_complexity 1 21 0 212 293 100 23 chr3 146979808 146979953 -80544625 + MIR SINE MIR 16 167 -62 21 0 0 0 chr3 146980477 146980498 -80544080 + AT_rich Low_complexity Low_complexity 1 21 0 373 188 34 43 chr3 146980498 146980615 -80543963 + MER69 DNA AcHobo 2058 2173 -353 901 128 45 67 chr3 146980642 146980821 -80543757 + AluJb SINE Alu 137 311 -1 1933 148 0 3 chr3 146981033 146981324 -80543254 + AluJo SINE Alu 1 290 -22 273 317 39 10 chr3 146982218 146982322 -80542256 + MIR SINE MIR 40 146 -62 295 251 182 21 chr3 146982586 146982773 -80541805 - L1ME4a LINE L1 0 6121 5905 1121 198 48 16 chr3 146982933 146983185 -80541393 + MIR SINE MIR 3 262 0 206 288 58 50 chr3 146983418 146983557 -80541021 + MIR SINE MIR 123 262 0 341 269 109 26 chr3 146983670 146983826 -80540752 + MIR SINE MIR 8 176 -86 236 237 10 113 chr3 146983823 146983920 -80540658 - L2 LINE L2 0 3272 3186 * 1089 162 37 140 chr3 146983937 146984358 -80540220 - MSTC LTR MaLR 0 428 52 194 299 41 41 chr3 146984372 146984469 -80540109 - MER5A DNA MER1_type -81 108 12 453 176 78 20 chr3 146984478 146984580 -80539998 - MER3 DNA MER1_type -82 127 67 304 89 22 0 chr3 146984597 146984642 -80539936 - MSTC LTR MaLR -382 46 1 28 0 0 0 chr3 146985076 146985104 -80539474 + GC_rich Low_complexity Low_complexity 1 28 0 2258 153 102 40 chr3 146985138 146985588 -80538990 + MLT1F1 LTR MaLR 85 562 -5 807 255 19 24 chr3 146986486 146986698 -80537880 + MIR SINE MIR 8 218 -44 262 270 148 61 chr3 146987522 146987637 -80536941 - MIR SINE MIR -62 146 22 25 75 0 0 chr3 146988496 146988549 -80536029 + GC_rich Low_complexity Low_complexity 1 53 0 247 290 0 0 chr3 146988714 146988776 -80535802 + L2 LINE L2 3210 3271 -1 201 251 0 0 chr3 146988856 146988918 -80535660 + MIR SINE MIR 87 147 -65 3840 226 23 47 chr3 147190339 147192248 -80332330 - HERVH LTR ERV1 -4361 2168 593 1997 186 52 25 chr3 147192308 147192755 -80331823 - HERVH LTR ERV1 -7254 459 1 1395 189 83 48 chr3 147192755 147193190 -80331388 - LTR7 LTR ERV1 0 450 1 216 259 102 19 chr3 147193383 147193491 -80331087 - L2 LINE L2 -171 3142 3026 1137 139 0 0 chr3 147193556 147193729 -80330849 - THE1B LTR MaLR -191 173 1 254 248 101 18 chr3 147197566 147197675 -80326903 - L2 LINE L2 -172 3141 3024 395 273 20 23 chr3 147201885 147202060 -80322518 - L1MA7 LINE L1 -159 6144 5978 584 171 193 14 chr3 147202180 147202320 -80322258 - Charlie1b DNA MER1_type -227 296 132 1826 123 58 27 chr3 147202364 147202656 -80321922 - AluSx SINE Alu -11 301 1 1761 198 0 10 chr3 147202761 147203075 -80321503 + AluJb SINE Alu 1 311 -1 27 0 0 0 chr3 147203075 147203102 -80321476 + AT_rich Low_complexity Low_complexity 1 27 0 2174 122 7 0 chr3 147203732 147204027 -80320551 + AluSx SINE Alu 1 297 -15 1941 153 7 10 chr3 147204162 147204463 -80320115 - AluSx SINE Alu -7 305 6 1417 160 91 0 chr3 147204466 147204697 -80319881 - AluJb SINE Alu -28 284 33 427 239 38 0 chr3 147204706 147204810 -80319768 - L1MC4 LINE L1 -1139 6646 6571 426 277 154 11 chr3 147204807 147204995 -80319583 + L1M4 LINE L1 3014 3228 -2918 * 1715 167 27 10 chr3 147205016 147205309 -80319269 + AluJo SINE Alu 1 298 -14 189 0 0 0 chr3 147205654 147205675 -80318903 + (CA)n Simple_repeat Simple_repeat 2 22 0 183 326 159 0 chr3 147206312 147206444 -80318134 - MIR SINE MIR -90 172 20 2244 75 4 0 chr3 147207526 147207792 -80316786 - AluSp SINE Alu -46 267 1 2082 145 7 3 chr3 147207794 147208104 -80316474 - AluSx SINE Alu -1 311 1 339 172 0 31 chr3 147208104 147208168 -80316410 - AluJo SINE Alu -156 146 85 2376 94 3 3 chr3 147208703 147209012 -80315566 + AluSp SINE Alu 1 309 -4 510 165 0 10 chr3 147209012 147209109 -80315469 + AluJb SINE Alu 204 299 -13 490 274 76 48 chr3 147209524 147209720 -80314858 - L1M4 LINE L1 -763 5383 5171 1977 163 100 28 chr3 147209720 147210150 -80314428 + MER65C LTR ERV1 1 461 0 490 274 76 48 chr3 147210150 147210310 -80314268 - L1M4 LINE L1 -975 5171 5017 1497 145 7 51 chr3 147210326 147210602 -80313976 + AluJb SINE Alu 35 298 -14 283 184 193 0 chr3 147210606 147210720 -80313858 + AluSp SINE Alu 7 142 -161 1255 132 28 5 chr3 147210889 147211102 -80313476 - HERVH LTR ERV1 -1896 5817 5600 4082 138 23 2 chr3 147211106 147211750 -80312828 - HERVH LTR ERV1 -2567 5146 4489 3108 121 18 6 chr3 147211753 147212249 -80312329 - HERVH LTR ERV1 -3720 3993 3492 838 167 7 0 chr3 147212239 147212389 -80312189 - HERVH LTR ERV1 -4423 3290 3140 * 19128 97 21 23 chr3 147212375 147215372 -80309206 - HERVH LTR ERV1 -4721 2992 1 1390 158 110 65 chr3 147215374 147215803 -80308775 - LTR7 LTR ERV1 -2 448 1 1587 91 26 0 chr3 147215803 147216034 -80308544 + LTR14 LTR ERVK 312 548 0 1480 136 61 7 chr3 147216034 147216311 -80308267 - MER51D LTR ERV1 -361 296 5 1725 160 27 0 chr3 147216336 147216630 -80307948 - HERVL LTR ERVL -2813 2841 2540 1286 190 97 56 chr3 147216943 147217375 -80307203 - LTR7 LTR ERV1 0 450 1 2686 101 21 12 chr3 147217375 147217802 -80306776 - HERVH LTR ERV1 0 7713 7283 10372 120 7 41 chr3 147217812 147219527 -80305051 - HERVH LTR ERV1 -2700 5013 3357 4157 130 9 14 chr3 147219527 147220225 -80304353 - HERVH LTR ERV1 -4883 2830 2137 791 248 84 4 chr3 147220546 147220784 -80303794 - L1M4 LINE L1 -600 5584 5328 671 182 0 38 chr3 147220792 147220924 -80303654 - FLAM_C SINE Alu -15 128 2 2372 212 80 13 chr3 147220931 147221627 -80302951 - L1M4 LINE L1 -812 5334 4589 2249 107 13 0 chr3 147221627 147221926 -80302652 - AluSx SINE Alu -9 303 1 382 271 96 45 chr3 147221943 147222235 -80302343 + L1M4 LINE L1 2215 2521 -3625 320 263 170 0 chr3 147222699 147222806 -80301772 + L1ME LINE L1 637 724 -5346 2052 146 3 3 chr3 147222806 147223107 -80301471 + AluSx SINE Alu 3 303 -9 320 263 170 0 chr3 147223107 147223246 -80301332 + L1ME LINE L1 724 925 -5145 3366 117 26 53 chr3 147223255 147223878 -80300700 + LTR14B LTR ERVK 3 608 0 1120 124 23 0 chr3 147223878 147224055 -80300523 + HERVK14 LTR ERVK 1 181 -5764 * 8528 75 12 11 chr3 147224050 147224741 -80299837 + HERVK14 LTR ERVK 1290 1984 -3961 2419 67 3 17 chr3 147224741 147225039 -80299539 + AluY SINE Alu 2 295 -16 8528 75 12 11 chr3 147225039 147225496 -80299082 + HERVK14 LTR ERVK 1984 2439 -3506 881 117 44 15 chr3 147225635 147225772 -80298806 + FRAM SINE Alu 17 157 -19 1177 143 104 21 chr3 147225772 147226052 -80298526 + L1MB4 LINE L1 5864 6166 -14 428 0 0 19 chr3 147227930 147227983 -80296595 + (CA)n Simple_repeat Simple_repeat 2 53 0 1336 206 32 81 chr3 147228203 147228598 -80295980 - MLT2B3 LTR ERVL 0 554 164 606 131 30 0 chr3 147229722 147229821 -80294757 + L1MB1 LINE L1 6022 6123 -66 520 154 192 0 chr3 147229824 147229928 -80294650 + FLAM_C SINE Alu 2 125 -18 289 226 78 35 chr3 147229937 147230052 -80294526 + L1MA10 LINE L1 6115 6234 -100 237 290 75 55 chr3 147230237 147230437 -80294141 + L1ME LINE L1 1005 1208 -4862 2214 96 10 7 chr3 147231081 147231407 -80293171 - AluSc SINE Alu 0 309 1 1609 96 12 29 chr3 147231409 147231649 -80292929 - AluSx SINE Alu -15 297 62 468 257 30 19 chr3 147232629 147232813 -80291765 + LTR43 LTR ERV1 153 491 -188 27 0 0 0 chr3 147233005 147233032 -80291546 + AT_rich Low_complexity Low_complexity 1 27 0 359 369 27 13 chr3 147233235 147233384 -80291194 + L1ME LINE L1 5626 5776 -345 252 0 0 0 chr3 147233617 147233645 -80290933 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1199 91 0 0 chr3 147234218 147234393 -80290185 + HERVH LTR ERV1 7429 7603 -110 907 158 51 116 chr3 147234393 147234729 -80289849 + LTR7 LTR ERV1 135 448 -2 1400 94 10 0 chr3 147234731 147234923 -80289655 - LTR14 LTR ERVK -232 316 123 2340 72 7 10 chr3 147234925 147235215 -80289363 + AluY SINE Alu 1 289 -22 257 164 104 112 chr3 147235316 147235450 -80289128 - LTR14 LTR ERVK -414 134 2 2209 200 46 55 chr3 147236052 147236657 -80287921 + L1MB7 LINE L1 5374 5973 -211 1459 188 46 9 chr3 147236658 147236983 -80287595 + MER1B DNA MER1_type 1 337 0 913 162 60 38 chr3 147237194 147237429 -80287149 - MLT1B LTR MaLR -149 241 2 369 234 219 23 chr3 147237643 147237771 -80286807 - MER5B DNA MER1_type -16 162 10 830 240 30 27 chr3 147237882 147238182 -80286396 + AluY SINE Alu 1 301 0 1699 104 47 29 chr3 147238633 147238911 -80285667 + AluYa5 SINE Alu 11 293 -18 269 114 0 0 chr3 147238869 147238913 -80285665 + Alu SINE Alu 251 294 -6 388 269 57 14 chr3 147238918 147239059 -80285519 + L1MD2 LINE L1 6167 6313 -46 2184 125 0 10 chr3 147239073 147239377 -80285201 + AluSx SINE Alu 1 301 -11 554 196 0 10 chr3 147239377 147239479 -80285099 + AluJb SINE Alu 134 234 -78 324 254 46 11 chr3 147239629 147239829 -80284749 - L1M4 LINE L1 -1622 4524 4313 29 28 0 0 chr3 147239883 147239919 -80284659 + AT_rich Low_complexity Low_complexity 1 36 0 502 264 26 61 chr3 147239968 147240058 -80284520 - L1M4 LINE L1 -3090 3056 2964 2392 112 0 0 chr3 147240058 147240362 -80284216 - AluSx SINE Alu -8 304 1 502 264 26 61 chr3 147240362 147240581 -80283997 - L1M4 LINE L1 -3182 2964 2758 973 243 132 48 chr3 147240596 147241092 -80283486 - MER77 LTR ERV1 -6 599 175 1647 92 4 35 chr3 147241265 147241492 -80283086 - AluSg/x SINE Alu -16 294 75 2391 73 7 3 chr3 147241503 147241804 -80282774 - AluSg SINE Alu -7 303 2 2016 181 54 50 chr3 147241804 147242116 -80282462 - L1MB7 LINE L1 -43 6141 5832 2335 97 0 3 chr3 147242116 147242424 -80282154 - AluSq SINE Alu -6 307 1 2016 181 54 50 chr3 147242424 147242511 -80282067 - L1MB7 LINE L1 -352 5832 5747 2003 148 6 16 chr3 147242511 147242822 -80281756 - AluJb SINE Alu -4 308 1 2016 181 54 50 chr3 147242822 147242918 -80281660 - L1MB7 LINE L1 -437 5747 5643 296 311 46 33 chr3 147244664 147244815 -80279763 + MIR SINE MIR 110 262 0 246 355 65 0 chr3 147244806 147244913 -80279665 + L2 LINE L2 3172 3285 -28 * 489 279 173 4 chr3 147245226 147245498 -80279080 + L1MD2 LINE L1 544 861 -5258 656 268 29 14 chr3 147245531 147245740 -80278838 + HAL1 LINE L1 181 392 -2115 1505 224 31 28 chr3 147245797 147246222 -80278356 + L1MD2 LINE L1 4437 4862 -1267 842 191 5 53 chr3 147246250 147246439 -80278139 + AluJo SINE Alu 117 296 -16 779 197 9 34 chr3 147246441 147246674 -80277904 + L1MD2 LINE L1 4981 5207 -922 315 186 12 23 chr3 147246678 147246764 -80277814 + L1MD2 LINE L1 5171 5255 -874 22 0 0 0 chr3 147246776 147246798 -80277780 + AT_rich Low_complexity Low_complexity 1 22 0 1234 193 0 100 chr3 147246800 147247111 -80277467 - AluSp SINE Alu -29 284 5 2328 110 0 0 chr3 147247120 147247421 -80277157 - AluSx SINE Alu -11 301 1 2768 231 46 51 chr3 147247421 147248277 -80276301 + L1MD2 LINE L1 5245 6095 -247 1824 172 14 3 chr3 147248278 147248574 -80276004 - AluJb SINE Alu -13 299 1 2064 202 139 15 chr3 147248574 147248632 -80275946 - L1MB4 LINE L1 -306 5874 5825 2363 80 0 3 chr3 147248632 147248921 -80275657 - AluSc SINE Alu -21 288 1 2064 202 139 15 chr3 147248921 147249792 -80274786 - L1MB4 LINE L1 -355 5825 4832 228 297 117 8 chr3 147250697 147250825 -80273753 - Charlie8 DNA MER1_type -2236 181 40 1366 75 32 5 chr3 147250889 147251077 -80273501 - AluY SINE Alu -6 305 113 656 209 33 0 chr3 147251198 147251351 -80273227 + MLT1B LTR MaLR 233 390 0 230 330 21 0 chr3 147252217 147252314 -80272264 + (TTAGGG)n Simple_repeat Simple_repeat 6 104 0 1834 121 61 4 chr3 147252346 147252610 -80271968 + AluSx SINE Alu 19 297 -15 288 0 0 0 chr3 147253279 147253311 -80271267 + (TG)n Simple_repeat Simple_repeat 1 32 0 2035 136 0 0 chr3 147253311 147253592 -80270986 - AluSx SINE Alu -31 281 1 1808 29 10 10 chr3 147253866 147254097 -80270481 + SVA Other Other 1178 1386 0 285 29 0 0 chr3 147256680 147256714 -80267864 + (TG)n Simple_repeat Simple_repeat 1 34 0 276 239 120 0 chr3 147257360 147257452 -80267126 + Charlie8 DNA MER1_type 132 234 -2183 24 39 0 0 chr3 147257915 147257941 -80266637 + GC_rich Low_complexity Low_complexity 1 26 0 205 254 36 18 chr3 147258363 147258418 -80266160 - L2 LINE L2 -25 3288 3233 1945 119 0 0 chr3 147258528 147258780 -80265798 + AluSq SINE Alu 1 252 -61 1031 178 85 66 chr3 147258780 147259073 -80265505 - L1MB8 LINE L1 -5 6173 5914 2051 153 3 0 chr3 147259073 147259373 -80265205 - AluJo SINE Alu -9 303 3 1031 178 85 66 chr3 147259373 147259585 -80264993 - L1MB8 LINE L1 -264 5914 5708 807 233 0 0 chr3 147259667 147259813 -80264765 + FRAM SINE Alu 16 161 -15 2431 80 3 3 chr3 147259872 147260171 -80264407 - AluSq SINE Alu -14 299 1 947 210 67 89 chr3 147260171 147260543 -80264035 + MLT1A2 LTR MaLR 7 370 -4 2304 97 10 10 chr3 147260697 147261007 -80263571 + AluSg SINE Alu 1 310 0 316 287 107 70 chr3 147261039 147261283 -80263295 + L1M4 LINE L1 4754 5006 -1140 330 268 96 89 chr3 147262477 147262555 -80262023 - MIR SINE MIR -70 192 116 2261 108 0 10 chr3 147262555 147262869 -80261709 - AluSx SINE Alu -1 311 1 330 268 96 89 chr3 147262869 147262947 -80261631 - MIR SINE MIR -146 116 35 304 281 39 46 chr3 147264046 147264199 -80260379 - MIR3 SINE MIR -27 181 30 254 269 30 0 chr3 147264800 147264867 -80259711 + L1ME3 LINE L1 6027 6095 -67 1753 113 8 0 chr3 147265047 147265285 -80259293 + AluSp SINE Alu 56 295 -18 190 200 60 0 chr3 147265777 147265827 -80258751 - L2 LINE L2 -6 3307 3255 749 132 0 39 chr3 147266437 147266566 -80258012 - FRAM SINE Alu 0 176 53 338 212 39 106 chr3 147266910 147267089 -80257489 + MER53 DNA DNA 2 168 -21 1909 153 3 3 chr3 147268322 147268604 -80255974 + AluJb SINE Alu 1 282 -30 1273 173 153 8 chr3 147268822 147269077 -80255501 - AluJo SINE Alu -20 292 1 211 185 148 0 chr3 147269116 147269170 -80255408 - MIR SINE MIR -130 78 17 2680 33 0 0 chr3 147269235 147269534 -80255044 + AluY SINE Alu 1 299 -12 535 284 155 17 chr3 147270240 147270479 -80254099 + L2 LINE L2 2990 3261 -52 459 300 139 54 chr3 147270810 147271033 -80253545 + MIR SINE MIR 13 254 -8 1343 82 44 16 chr3 147271742 147271832 -80252746 + AluSg SINE Alu 41 127 -183 2201 88 0 14 chr3 147271832 147271966 -80252612 + AluSg SINE Alu 1 135 -196 2404 86 7 0 chr3 147271966 147272268 -80252310 + AluY SINE Alu 2 305 -6 2201 88 0 14 chr3 147272268 147272468 -80252110 + AluSg SINE Alu 135 331 0 1343 82 44 16 chr3 147272468 147272558 -80252020 + AluSg SINE Alu 127 227 -83 2228 131 0 3 chr3 147272578 147272891 -80251687 + AluSx SINE Alu 1 312 0 1896 153 13 3 chr3 147273844 147274145 -80250433 + AluSq SINE Alu 1 304 -9 192 40 0 0 chr3 147274359 147274384 -80250194 + (TTG)n Simple_repeat Simple_repeat 1 25 0 368 273 183 23 chr3 147274516 147274838 -80249740 + L1ME4a LINE L1 4735 6048 -73 3473 170 60 38 chr3 147275171 147275550 -80249028 - L1MDa LINE L1 -4272 2268 1899 2277 123 7 0 chr3 147275550 147275858 -80248720 - AluSx SINE Alu -2 310 1 3473 170 60 38 chr3 147275858 147276339 -80248239 - L1MDa LINE L1 -4641 1899 1389 27 0 0 0 chr3 147276339 147276366 -80248212 + AT_rich Low_complexity Low_complexity 1 27 0 6667 65 15 50 chr3 147276366 147277354 -80247224 - SVA Other Other 0 1386 433 5789 71 45 62 chr3 147277371 147279044 -80245534 - SVA Other Other -518 868 5 492 191 64 0 chr3 147279190 147279300 -80245278 + L1MA7 LINE L1 6173 6289 -2 2366 86 0 0 chr3 147279319 147279610 -80244968 + AluY SINE Alu 1 291 -20 22 0 0 0 chr3 147280350 147280372 -80244206 + AT_rich Low_complexity Low_complexity 1 22 0 2489 47 7 3 chr3 147281224 147281522 -80243056 - AluY SINE Alu -12 299 1 232 281 73 10 chr3 147282470 147282566 -80242012 + MIR SINE MIR 30 131 -77 2589 136 151 29 chr3 147282741 147283264 -80241314 - LTR4 LTR ERV1 0 588 2 2722 153 14 7 chr3 147283266 147283696 -80240882 - HERV3 LTR ERV1 0 8426 7994 5756 137 15 12 chr3 147283720 147284612 -80239966 - HERV3 LTR ERV1 -2112 6314 5421 1956 218 32 8 chr3 147284627 147285027 -80239551 - HERV3 LTR ERV1 -5273 3153 2744 * 13832 151 34 49 chr3 147285025 147285682 -80238896 - HERV3 LTR ERV1 -5891 2535 1870 2541 70 0 3 chr3 147285682 147285984 -80238594 + AluY SINE Alu 2 302 -9 13832 151 34 49 chr3 147285984 147287897 -80236681 - HERV3 LTR ERV1 -6556 1870 2 2735 126 146 29 chr3 147287897 147288423 -80236155 - LTR4 LTR ERV1 0 588 1 816 175 42 71 chr3 147288598 147288838 -80235740 + L1MD1 LINE L1 5991 6223 -19 281 235 0 82 chr3 147289720 147289818 -80234760 - MIR SINE MIR -132 130 41 4185 65 14 2 chr3 147290395 147290961 -80233617 + L1PA5 LINE L1 5581 6153 -1 2354 86 23 0 chr3 147291011 147291313 -80233265 + AluSq SINE Alu 1 309 -4 505 285 83 24 chr3 147291999 147292230 -80232348 - MIR SINE MIR -10 252 4 2545 72 3 0 chr3 147292301 147292605 -80231973 - AluY SINE Alu -6 305 1 893 191 6 0 chr3 147294119 147294281 -80230297 - FAM SINE Alu -10 165 3 381 291 106 14 chr3 147294349 147294490 -80230088 - MIR SINE MIR -87 175 22 2447 96 0 0 chr3 147294694 147294997 -80229581 - AluSx SINE Alu -9 303 1 184 182 0 0 chr3 147295470 147295503 -80229075 - MIR SINE MIR -151 111 79 190 100 0 0 chr3 147295503 147295533 -80229045 - MIR SINE MIR -144 118 89 243 128 43 0 chr3 147295535 147295582 -80228996 - MIR SINE MIR -136 126 78 231 162 0 0 chr3 147295582 147295619 -80228959 - MIR SINE MIR -147 115 79 203 225 0 0 chr3 147295619 147295659 -80228919 - MIR SINE MIR -144 118 79 182 229 0 0 chr3 147295660 147295695 -80228883 - MIR SINE MIR -145 117 83 194 158 79 0 chr3 147295697 147295735 -80228843 - MIR SINE MIR -143 119 79 246 150 0 0 chr3 147295735 147295775 -80228803 - MIR SINE MIR -144 118 79 218 150 0 0 chr3 147295775 147295815 -80228763 - MIR SINE MIR -144 118 79 276 100 0 0 chr3 147295855 147295895 -80228683 - MIR SINE MIR -144 118 79 258 150 0 0 chr3 147295895 147295935 -80228643 - MIR SINE MIR -144 118 79 263 115 0 12 chr3 147295958 147296006 -80228572 - MIR SINE MIR -83 125 80 312 50 0 0 chr3 147296007 147296047 -80228531 - MIR SINE MIR -144 118 79 555 214 16 0 chr3 147296054 147296180 -80228398 + AluJb SINE Alu 184 311 -1 2439 171 33 23 chr3 147296180 147296411 -80228167 + L1MB7 LINE L1 5598 5825 -359 1858 173 3 0 chr3 147296411 147296706 -80227872 + AluJo SINE Alu 5 300 -12 2439 171 33 23 chr3 147296706 147296893 -80227685 + L1MB7 LINE L1 5825 6024 -160 2239 117 10 0 chr3 147296893 147297200 -80227378 - AluSp SINE Alu -3 310 1 2439 171 33 23 chr3 147297200 147297301 -80227277 + L1MB7 LINE L1 6024 6123 -61 1260 167 0 20 chr3 147297301 147297505 -80227073 - AluJb SINE Alu -23 289 90 357 85 0 17 chr3 147297514 147297573 -80227005 + L1MB7 LINE L1 6111 6168 -16 228 163 23 0 chr3 147297573 147297616 -80226962 + Charlie5 DNA MER1_type 2542 2585 -27 346 310 47 16 chr3 147298373 147298502 -80226076 + L2 LINE L2 3136 3268 -4 547 266 171 30 chr3 147298736 147299041 -80225537 + MLT1K LTR MaLR 151 498 -90 2254 64 16 58 chr3 147299622 147299934 -80224644 + AluY SINE Alu 1 299 -12 930 228 186 0 chr3 147300472 147300810 -80223768 - MER74A LTR ERVL -27 531 131 1529 144 96 48 chr3 147300810 147301101 -80223477 + AluJo SINE Alu 1 305 -7 242 288 85 34 chr3 147301274 147301392 -80223186 + L2 LINE L2 3010 3133 -180 * 389 247 118 0 chr3 147301376 147301562 -80223016 + L2 LINE L2 2694 2901 -413 200 268 65 49 chr3 147301626 147301749 -80222829 + L2 LINE L2 3171 3295 -18 393 321 61 16 chr3 147301799 147302096 -80222482 - L2 LINE L2 0 3313 2925 1831 263 58 48 chr3 147302206 147302985 -80221593 - L2 LINE L2 -697 2617 1831 779 211 183 21 chr3 147302985 147303274 -80221304 - L2 LINE L2 -1662 1652 1317 370 204 0 78 chr3 147303556 147303659 -80220919 - MIR SINE MIR -84 178 84 263 211 184 0 chr3 147304347 147304423 -80220155 - MLT1C LTR MaLR -159 308 219 1766 138 101 37 chr3 147304604 147304930 -80219648 + MER57A LTR ERV1 1 356 -47 2221 116 3 0 chr3 147304930 147305223 -80219355 - AluSx SINE Alu -18 294 1 1766 138 101 37 chr3 147305223 147305272 -80219306 + MER57A LTR ERV1 356 400 -3 312 242 63 11 chr3 147305382 147305477 -80219101 - MIR SINE MIR -43 219 120 506 258 38 38 chr3 147306101 147306287 -80218291 - LTR8 LTR ERV1 -138 553 368 2355 171 101 46 chr3 147306424 147306603 -80217975 + LTR8 LTR ERV1 1 169 -522 180 0 0 0 chr3 147306603 147306623 -80217955 + (CAA)n Simple_repeat Simple_repeat 2 21 0 2355 171 101 46 chr3 147306623 147307098 -80217480 + LTR8 LTR ERV1 169 691 0 1857 63 112 19 chr3 147308633 147308902 -80215676 - AluSq SINE Alu -19 294 1 221 326 11 43 chr3 147308906 147308998 -80215580 + MIR SINE MIR 119 207 -55 298 264 35 11 chr3 147309038 147309125 -80215453 + MIR SINE MIR 61 149 -113 208 273 169 0 chr3 147309319 147309396 -80215182 - MIR SINE MIR -121 141 52 544 241 148 30 chr3 147309493 147309729 -80214849 + L2 LINE L2 1317 1580 -1734 1843 294 47 41 chr3 147309729 147310230 -80214348 + L2 LINE L2 1776 2285 -1029 819 201 0 6 chr3 147310230 147310394 -80214184 - FRAM SINE Alu -3 163 1 1843 294 47 41 chr3 147310394 147310718 -80213860 + L2 LINE L2 2285 2606 -708 1191 158 0 13 chr3 147311292 147311557 -80213021 - AluJb SINE Alu 0 312 2 2546 72 10 0 chr3 147311565 147311871 -80212707 - AluSg SINE Alu -1 309 1 207 358 67 15 chr3 147312395 147312529 -80212049 - MIR SINE MIR -49 213 73 24 53 0 0 chr3 147312829 147312867 -80211711 + AT_rich Low_complexity Low_complexity 1 38 0 441 296 142 27 chr3 147313138 147313398 -80211180 - MER5C DNA MER1_type -1 323 34 303 207 0 0 chr3 147313533 147313591 -80210987 - Charlie1 DNA MER1_type -56 2705 2648 182 36 0 36 chr3 147313594 147313622 -80210956 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 504 260 75 0 chr3 147313625 147313771 -80210807 - FAM SINE Alu -18 157 1 1850 124 0 0 chr3 147313906 147314155 -80210423 + AluSg SINE Alu 54 302 -8 241 358 75 7 chr3 147314159 147314438 -80210140 - L1M4c LINE L1 -4750 1634 1337 * 852 250 93 16 chr3 147314429 147314805 -80209773 + L1ME1 LINE L1 5757 6161 -5 734 146 62 0 chr3 147315050 147315180 -80209398 - FRAM SINE Alu -19 157 20 430 277 0 17 chr3 147315426 147315545 -80209033 - L1ME3A LINE L1 -15 6155 6039 1826 182 3 13 chr3 147315576 147315884 -80208694 + AluJo SINE Alu 1 305 -7 303 188 43 0 chr3 147316411 147316480 -80208098 - L1MC4 LINE L1 -1061 6981 6910 481 226 9 0 chr3 147316715 147316821 -80207757 + MER20 DNA MER1_type 113 219 0 368 241 82 103 chr3 147316952 147317046 -80207532 + L1ME4a LINE L1 5931 6025 -96 2088 146 3 3 chr3 147317046 147317347 -80207231 - AluJo SINE Alu -11 301 1 368 241 82 103 chr3 147317347 147317385 -80207193 + L1ME4a LINE L1 6025 6062 -59 2415 109 0 0 chr3 147317385 147317689 -80206889 - AluSx SINE Alu -8 304 1 368 241 82 103 chr3 147317689 147317750 -80206828 + L1ME4a LINE L1 6062 6121 0 1748 102 45 4 chr3 147319701 147319946 -80204632 - AluSc SINE Alu -12 297 43 335 284 42 0 chr3 147319957 147320052 -80204526 + MER58B DNA MER1_type 242 340 -1 2009 128 13 19 chr3 147320357 147320670 -80203908 - AluSx SINE Alu -1 311 1 283 217 62 133 chr3 147320818 147320921 -80203657 - L1MC5 LINE L1 -229 7732 7623 1945 124 41 21 chr3 147320921 147321212 -80203366 - AluJb SINE Alu -15 297 1 283 217 62 133 chr3 147321212 147321348 -80203230 - L1MC5 LINE L1 -338 7623 7510 301 217 11 11 chr3 147321399 147321491 -80203087 - L1MA8 LINE L1 0 6291 6200 360 0 0 0 chr3 147322036 147322076 -80202502 + (TG)n Simple_repeat Simple_repeat 2 41 0 1902 167 0 0 chr3 147322462 147322744 -80201834 - AluSx SINE Alu -30 282 1 2300 65 45 3 chr3 147322746 147323037 -80201541 - AluY SINE Alu -8 303 1 866 126 0 22 chr3 147323039 147323174 -80201404 - AluJo/FLAM SINE Alu -169 133 2 301 320 100 48 chr3 147323370 147323679 -80200899 + L2 LINE L2 2923 3247 -66 276 30 0 0 chr3 147323685 147323718 -80200860 + (TGGA)n Simple_repeat Simple_repeat 1 33 0 1954 211 56 8 chr3 147324232 147324752 -80199826 - L1MB7 LINE L1 -16 6168 5624 615 158 0 0 chr3 147324756 147324851 -80199727 - AluJ/FLAM SINE Alu -217 95 1 267 259 0 0 chr3 147325798 147325856 -80198722 - MIR SINE MIR -60 148 91 2367 94 0 10 chr3 147327375 147327684 -80196894 + AluSq SINE Alu 1 306 -7 733 120 9 0 chr3 147327692 147327800 -80196778 + AluJb SINE Alu 87 195 -117 22 0 0 0 chr3 147328063 147328085 -80196493 + AT_rich Low_complexity Low_complexity 1 22 0 192 301 41 32 chr3 147333041 147333164 -80191414 - MIR SINE MIR -132 130 7 260 71 48 0 chr3 147333536 147333578 -80191000 + (TATG)n Simple_repeat Simple_repeat 3 46 0 2285 99 0 3 chr3 147333578 147333870 -80190708 - AluSq SINE Alu -22 291 1 2152 122 0 26 chr3 147333950 147334254 -80190324 - AluSx SINE Alu -16 296 1 459 245 115 52 chr3 147337303 147337495 -80187083 - MIR3 SINE MIR -1 207 4 432 280 94 92 chr3 147340017 147340602 -80183976 + HAL1 LINE L1 979 1529 -978 2150 129 0 10 chr3 147340700 147341002 -80183576 + AluSx SINE Alu 1 299 -13 2292 112 13 0 chr3 147341453 147341756 -80182822 - AluSq SINE Alu -6 307 1 369 271 96 45 chr3 147341773 147342065 -80182513 + L1M4 LINE L1 2215 2521 -3625 311 259 170 0 chr3 147342529 147342636 -80181942 + L1ME LINE L1 637 724 -5346 2053 146 3 3 chr3 147342636 147342937 -80181641 + AluSx SINE Alu 3 303 -9 311 259 170 0 chr3 147342937 147343076 -80181502 + L1ME LINE L1 724 925 -5145 3855 104 24 51 chr3 147343085 147343708 -80180870 + LTR14B LTR ERVK 3 608 0 1106 124 23 0 chr3 147343708 147343885 -80180693 + HERVK14 LTR ERVK 1 181 -5764 * 8548 72 12 11 chr3 147343880 147344571 -80180007 + HERVK14 LTR ERVK 1290 1984 -3961 2394 70 3 17 chr3 147344571 147344869 -80179709 + AluY SINE Alu 2 295 -16 8548 72 12 11 chr3 147344869 147345326 -80179252 + HERVK14 LTR ERVK 1984 2439 -3506 3314 72 24 66 chr3 147345320 147345897 -80178681 + HERVK14 LTR ERVK 5103 5572 -373 * 1275 153 24 0 chr3 147345899 147345927 -80178651 + MER41C-int LTR ERV1 5733 5946 0 1415 61 22 0 chr3 147345927 147346108 -80178470 + HERVK14 LTR ERVK 5575 5759 -186 353 162 0 18 chr3 147346108 147346183 -80178395 + MER41C LTR ERV1 1 61 -493 419 38 0 0 chr3 147346183 147346236 -80178342 + HERVK14 LTR ERVK 5835 5887 -58 916 319 6 9 chr3 147346301 147346630 -80177948 + HERVK14 LTR ERVK 4928 5255 -7 4110 101 6 64 chr3 147346636 147346945 -80177633 + LTR14B LTR ERVK 3 257 -351 2421 92 3 10 chr3 147346945 147347259 -80177319 - AluSp SINE Alu -1 312 1 4110 101 6 64 chr3 147347259 147347592 -80176986 + LTR14B LTR ERVK 257 608 0 2142 137 6 46 chr3 147347627 147347977 -80176601 - MER1B DNA MER1_type -1 336 1 519 251 111 38 chr3 147347982 147348465 -80176113 + L1ME LINE L1 990 1447 -4633 330 222 109 50 chr3 147348519 147348739 -80175839 + L1ME LINE L1 5127 5373 -723 1756 135 15 33 chr3 147348740 147349014 -80175564 + AluSx SINE Alu 1 269 -43 358 200 118 74 chr3 147349014 147349149 -80175429 + L1MB7 LINE L1 4051 4191 -1955 1113 201 61 72 chr3 147349167 147349327 -80175251 + MLT1B LTR MaLR 1 161 -229 2286 110 0 0 chr3 147349327 147349619 -80174959 + AluSc SINE Alu 1 292 -17 1113 201 61 72 chr3 147349619 147349821 -80174757 + MLT1B LTR MaLR 161 359 -31 2914 220 104 28 chr3 147349908 147349952 -80174626 + L1MB7 LINE L1 4288 4327 -1819 2538 50 0 13 chr3 147349952 147350254 -80174324 + AluY SINE Alu 1 298 -13 2914 220 104 28 chr3 147350254 147350485 -80174093 + L1MB7 LINE L1 4327 4539 -1607 2366 89 0 3 chr3 147350485 147350787 -80173791 + AluY SINE Alu 2 302 -9 2914 220 104 28 chr3 147350787 147351483 -80173095 + L1MB7 LINE L1 4539 5334 -812 724 182 0 38 chr3 147351490 147351622 -80172956 + FLAM_C SINE Alu 2 128 -15 2790 232 42 19 chr3 147351630 147352449 -80172129 + L1MB7 LINE L1 5328 6164 -20 2055 130 3 0 chr3 147352674 147352958 -80171620 - AluSx SINE Alu -22 290 6 1388 162 92 0 chr3 147352961 147353190 -80171388 - AluJb SINE Alu -28 284 35 394 300 0 0 chr3 147353201 147353291 -80171287 - L1MC4 LINE L1 -1339 6703 6614 * 415 271 154 11 chr3 147353290 147353478 -80171100 + L1M4 LINE L1 3014 3228 -2918 1707 167 27 10 chr3 147353499 147353792 -80170786 + AluJo SINE Alu 1 298 -14 204 311 159 0 chr3 147354793 147354925 -80169653 - MIR SINE MIR -90 172 20 187 318 59 0 chr3 147355342 147355427 -80169151 + MIR SINE MIR 60 149 -113 2228 75 4 0 chr3 147356011 147356277 -80168301 - AluSp SINE Alu -46 267 1 2069 145 7 3 chr3 147356279 147356589 -80167989 - AluSx SINE Alu -1 311 1 331 172 0 31 chr3 147356589 147356653 -80167925 - AluJo SINE Alu -156 146 85 2365 94 3 3 chr3 147357188 147357497 -80167081 + AluSp SINE Alu 1 309 -4 545 165 0 10 chr3 147357497 147357594 -80166984 + AluJb SINE Alu 204 299 -13 458 274 76 48 chr3 147358009 147358205 -80166373 - L1M4 LINE L1 -763 5383 5171 2173 153 100 28 chr3 147358205 147358635 -80165943 + MER65C LTR ERV1 1 461 0 458 274 76 48 chr3 147358635 147358795 -80165783 - L1M4 LINE L1 -975 5171 5017 1576 136 7 50 chr3 147358811 147359091 -80165487 + AluJb SINE Alu 35 302 -10 2082 86 43 14 chr3 147359095 147359375 -80165203 + AluYa5 SINE Alu 7 294 -17 377 269 57 14 chr3 147359382 147359523 -80165055 + L1MD2 LINE L1 6167 6313 -46 2018 130 23 10 chr3 147359537 147359837 -80164741 + AluSx SINE Alu 1 304 -8 647 146 7 44 chr3 147359837 147359974 -80164604 + L1MDa LINE L1 1310 1441 -5099 1498 163 39 39 chr3 147359974 147360280 -80164298 + AluY SINE Alu 1 306 -5 628 134 126 0 chr3 147360281 147360400 -80164178 - LTR14 LTR ERVK -414 134 1 1646 142 37 20 chr3 147360430 147360726 -80163852 + MER51D LTR ERV1 357 657 0 20089 82 19 11 chr3 147360726 147363538 -80161040 + HERVL LTR ERVL 2838 5764 0 638 188 102 65 chr3 147363538 147363566 -80161012 + Ricksha DNA DNA 352 386 -868 279 0 0 0 chr3 147364061 147364092 -80160486 + (GGGAGA)n Simple_repeat Simple_repeat 6 36 0 2478 67 0 0 chr3 147364128 147364426 -80160152 - AluY SINE Alu -13 298 1 652 139 7 44 chr3 147364426 147364563 -80160015 - L1MDa LINE L1 -5099 1441 1310 1968 137 27 0 chr3 147364563 147364856 -80159722 - AluSg1 SINE Alu -8 301 1 992 187 0 32 chr3 147364858 147365045 -80159533 - AluJo SINE Alu -14 298 118 722 186 160 17 chr3 147365045 147365282 -80159296 - L1MDa LINE L1 -5258 1285 1015 1369 173 47 24 chr3 147365284 147365539 -80159039 + AluJo SINE Alu 52 312 0 1486 252 123 12 chr3 147365610 147366251 -80158327 - L1MDa LINE L1 -5572 968 2 579 275 58 0 chr3 147366235 147366406 -80158172 - HAL1 LINE L1 -1120 1387 1207 * 1236 147 0 11 chr3 147366406 147366590 -80157988 - AluSg/x SINE Alu -11 301 120 2363 202 91 8 chr3 147366628 147367147 -80157431 + MER68 LTR ERV1 1 562 0 416 289 108 21 chr3 147367190 147367604 -80156974 - HAL1 LINE L1 -1575 932 446 2112 139 0 3 chr3 147367672 147367973 -80156605 + AluSp SINE Alu 1 300 -13 2751 210 35 100 chr3 147367974 147368830 -80155748 - L1MD2 LINE L1 -247 6095 5184 2328 110 0 0 chr3 147368830 147369131 -80155447 + AluSx SINE Alu 1 301 -11 1766 119 0 100 chr3 147369140 147369450 -80155128 + AluJb SINE Alu 5 283 -29 2751 210 35 100 chr3 147369450 147369571 -80155007 - L1MD2 LINE L1 -1044 5298 5171 784 193 9 34 chr3 147369575 147369808 -80154770 - L1MD2 LINE L1 -922 5207 4981 842 191 5 53 chr3 147369810 147369999 -80154579 - AluJo SINE Alu -16 296 117 1524 221 31 28 chr3 147370027 147370452 -80154126 - L1MD2 LINE L1 -1267 4862 4437 656 268 29 14 chr3 147370509 147370718 -80153860 - HAL1 LINE L1 -2115 392 181 489 279 173 4 chr3 147370751 147371023 -80153555 - L1MD2 LINE L1 -5258 861 544 246 355 65 0 chr3 147371336 147371443 -80153135 - L2 LINE L2 -28 3285 3172 * 296 311 46 33 chr3 147371434 147371585 -80152993 - MIR SINE MIR 0 262 110 1061 254 41 51 chr3 147372250 147372396 -80152182 + L1M4 LINE L1 3960 4106 -2040 2492 55 3 0 chr3 147372396 147372689 -80151889 - AluY SINE Alu -7 304 11 1061 254 41 51 chr3 147372689 147372932 -80151646 + L1M4 LINE L1 4106 4345 -1801 240 206 9 0 chr3 147372962 147373029 -80151549 - L1M4 LINE L1 -1200 4946 4878 2338 100 3 0 chr3 147373046 147373345 -80151233 - AluSx SINE Alu -12 300 1 827 159 45 125 chr3 147373357 147373576 -80151002 - L1MB8 LINE L1 -12 6166 5974 2231 118 43 0 chr3 147373576 147373899 -80150679 - MER1B DNA MER1_type 0 337 1 827 159 45 125 chr3 147373899 147373968 -80150610 - L1MB8 LINE L1 -204 5974 5901 281 241 0 11 chr3 147374078 147374150 -80150428 - AluJ/monomer SINE Alu -246 54 2 2434 104 0 0 chr3 147374645 147374954 -80149624 + AluSc SINE Alu 1 309 0 407 85 0 85 chr3 147375304 147375386 -80149192 + AluSp/q SINE Alu 239 313 0 582 168 204 0 chr3 147375386 147375523 -80149055 - Charlie1b DNA MER1_type -227 296 132 1818 123 58 27 chr3 147375567 147375859 -80148719 - AluSx SINE Alu -11 301 1 1767 194 0 10 chr3 147375964 147376278 -80148300 + AluJb SINE Alu 1 311 -1 219 36 0 0 chr3 147376281 147376309 -80148269 + (TA)n Simple_repeat Simple_repeat 2 29 0 318 216 63 27 chr3 147376875 147376937 -80147641 - Charlie1b DNA MER1_type -2615 146 77 2228 125 0 0 chr3 147376937 147377234 -80147344 + AluSx SINE Alu 1 297 -15 318 216 63 27 chr3 147377234 147377282 -80147296 - Charlie1b DNA MER1_type -2684 77 32 24 32 0 0 chr3 147377396 147377427 -80147151 + AT_rich Low_complexity Low_complexity 1 31 0 1160 156 0 0 chr3 147377599 147377785 -80146793 + MER7A DNA MER2_type 3 186 -160 22 35 0 0 chr3 147377805 147377834 -80146744 + AT_rich Low_complexity Low_complexity 1 29 0 927 95 0 0 chr3 147377838 147377954 -80146624 - AluJb SINE Alu -196 116 1 765 133 47 0 chr3 147377954 147378082 -80146496 + MER7A DNA MER2_type 173 306 -40 235 324 0 0 chr3 147378107 147378133 -80146445 - L1MA10 LINE L1 -99 6235 6210 877 221 128 3 chr3 147378133 147378454 -80146124 - L1ME1 LINE L1 -116 6050 5690 1895 170 3 16 chr3 147378455 147378766 -80145812 - AluJo SINE Alu -5 307 1 1763 94 26 9 chr3 147378789 147379022 -80145556 - AluSg SINE Alu -73 237 1 262 250 62 0 chr3 147379029 147379093 -80145485 - L1MEc LINE L1 -4554 1842 1775 253 109 22 0 chr3 147379193 147379239 -80145339 + Alu SINE Alu 253 299 -1 2140 126 7 0 chr3 147379336 147379645 -80144933 - AluSx SINE Alu -1 311 1 302 222 0 81 chr3 147380284 147380383 -80144195 + MLT1K LTR MaLR 405 495 -93 195 293 164 50 chr3 147380413 147380553 -80144025 + L3 LINE CR1 821 976 -601 496 280 111 66 chr3 147380605 147380955 -80143623 + L3 LINE CR1 1209 1574 -3 418 278 92 17 chr3 147381176 147381349 -80143229 - MIR SINE MIR -44 218 33 965 257 157 69 chr3 147381603 147382310 -80142268 + L2 LINE L2 1622 2390 -924 1748 157 104 48 chr3 147382460 147382758 -80141820 + MSTD LTR MaLR 1 326 -70 2271 122 3 3 chr3 147382758 147383070 -80141508 - AluSx SINE Alu 0 312 1 1748 157 104 48 chr3 147383070 147383146 -80141432 + MSTD LTR MaLR 326 396 0 208 276 38 48 chr3 147383401 147383506 -80141072 + MIR SINE MIR 20 123 -139 2371 59 0 71 chr3 147383687 147384011 -80140567 + AluY SINE Alu 1 301 -10 510 202 0 0 chr3 147384134 147384238 -80140340 + MER57A LTR ERV1 300 403 0 426 288 39 0 chr3 147384238 147384390 -80140188 + MER113 DNA MER1_type? 201 358 -163 286 245 75 19 chr3 147384925 147385031 -80139547 + MIR SINE MIR 17 128 -80 496 250 46 7 chr3 147385366 147385518 -80139060 - MER20B DNA MER1_type -61 722 565 201 152 0 0 chr3 147385646 147385679 -80138899 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 1159 92 0 0 chr3 147385719 147385872 -80138706 - AluSp/q SINE Alu -5 308 156 1072 278 72 33 chr3 147385888 147386316 -80138262 - MER20B DNA MER1_type -331 452 8 320 235 143 87 chr3 147386576 147386664 -80137914 + MIR SINE MIR 46 128 -134 1873 151 7 0 chr3 147386664 147386962 -80137616 - AluJb SINE Alu -12 300 1 320 235 143 87 chr3 147386962 147387069 -80137509 + MIR SINE MIR 128 252 -10 264 190 25 89 chr3 147387158 147387195 -80137383 + MER3 DNA MER1_type 17 48 -161 361 129 12 106 chr3 147387195 147387249 -80137329 - MER3 DNA MER1_type 0 209 164 2385 88 0 0 chr3 147387249 147387555 -80137023 + AluSq SINE Alu 1 306 -7 361 129 12 106 chr3 147387555 147387585 -80136993 - MER3 DNA MER1_type -45 164 133 925 81 0 0 chr3 147387686 147387809 -80136769 + AluSp/q SINE Alu 182 304 -9 729 200 73 7 chr3 147387810 147387960 -80136618 - MER3 DNA MER1_type -49 160 1 1524 221 47 3 chr3 147388978 147389300 -80135278 - MER58B DNA MER1_type -3 338 3 222 288 15 15 chr3 147389626 147389692 -80134886 + MIR SINE MIR 78 143 -65 1290 235 143 14 chr3 147389836 147390257 -80134321 + MLT1E2 LTR MaLR 152 626 0 860 203 96 55 chr3 147390305 147390713 -80133865 + MLT1L LTR MaLR 110 613 -2 342 306 20 0 chr3 147390718 147390816 -80133762 + MIR SINE MIR 163 262 0 447 149 53 35 chr3 147391194 147391308 -80133270 + AluJb SINE Alu 190 305 -7 616 253 111 99 chr3 147391308 147391652 -80132926 - MLT1L LTR MaLR -53 458 111 358 225 22 22 chr3 147391598 147391687 -80132891 - LTR67 LTR ERVL -389 168 80 * 1637 154 3 48 chr3 147392248 147392560 -80132018 + AluJb SINE Alu 1 298 -14 1025 261 108 21 chr3 147392651 147393077 -80131501 - MLT1K LTR MaLR 0 588 126 1140 144 0 0 chr3 147393466 147393640 -80130938 + FRAM SINE Alu 1 173 -3 181 95 24 24 chr3 147393969 147394011 -80130567 + (GGA)n Simple_repeat Simple_repeat 2 43 0 406 306 69 14 chr3 147394500 147394644 -80129934 + MIR SINE MIR 88 239 -23 747 199 151 0 chr3 147394902 147395179 -80129399 - L2 LINE L2 -303 3010 2689 297 229 67 57 chr3 147395462 147395567 -80129011 - MIR3 SINE MIR -9 199 94 789 253 93 69 chr3 147395577 147395984 -80128594 - MLT1K LTR MaLR -4 584 168 753 170 106 0 chr3 147396852 147396993 -80127585 + MIR SINE MIR 3 158 -104 313 226 49 29 chr3 147397740 147397842 -80126736 + LTR67 LTR ERVL 437 540 -17 221 342 0 0 chr3 147397934 147398013 -80126565 + MIR SINE MIR 74 152 -56 234 146 83 21 chr3 147398317 147398365 -80126213 - MIR SINE MIR -100 162 112 1129 263 43 51 chr3 147398449 147398879 -80125699 + L1M4 LINE L1 3655 4072 -2074 1795 157 0 10 chr3 147398879 147399178 -80125400 + AluJb SINE Alu 1 296 -16 1129 263 43 51 chr3 147399178 147399296 -80125282 + L1M4 LINE L1 4072 4189 -1957 352 299 109 15 chr3 147399507 147399644 -80124934 + MIR SINE MIR 62 211 -51 329 256 56 0 chr3 147400271 147400361 -80124217 - MIR SINE MIR -66 196 102 226 307 119 51 chr3 147401440 147401616 -80122962 - L2 LINE L2 -164 3108 2921 4435 212 25 6 chr3 147403586 147404590 -80119988 + L1P LINE L1 1498 2520 -3626 446 235 39 20 chr3 147405568 147405670 -80118908 + L2 LINE L2 3168 3271 -1 300 259 189 43 chr3 147405745 147405930 -80118648 - MLT1L LTR MaLR -60 555 344 614 280 203 16 chr3 147406521 147407019 -80117559 + L2 LINE L2 2724 3308 -5 1624 216 92 25 chr3 147407261 147407705 -80116873 - MER74B LTR ERVL -93 529 56 2279 174 34 58 chr3 147407713 147408243 -80116335 - Tigger6a DNA MER2_type -306 777 261 256 274 14 14 chr3 147409166 147409239 -80115339 + MIR3 SINE MIR 87 159 -49 225 0 0 0 chr3 147410138 147410163 -80114415 + (A)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr3 147410201 147410223 -80114355 + AT_rich Low_complexity Low_complexity 1 22 0 877 239 0 5 chr3 147410328 147410512 -80114066 + MER69 DNA AcHobo 24 206 -2320 363 264 96 48 chr3 147412602 147412769 -80111809 - MIR SINE MIR 0 262 88 915 203 0 12 chr3 147412896 147413059 -80111519 + FRAM SINE Alu 2 162 -4 2081 145 0 0 chr3 147413164 147413475 -80111103 + AluSx SINE Alu 1 311 -1 5047 79 16 4 chr3 147413611 147413662 -80110916 + L1PA14 LINE L1 5137 5186 -975 2234 77 6 13 chr3 147413662 147413974 -80110604 + AluY SINE Alu 1 310 -1 5047 79 16 4 chr3 147413974 147414701 -80109877 + L1PA14 LINE L1 5186 5931 -230 444 248 71 50 chr3 147414873 147415071 -80109507 + L2 LINE L2 3112 3313 0 836 283 67 4 chr3 147415132 147415372 -80109206 + MIR SINE MIR 2 256 -6 237 162 0 0 chr3 147416293 147416330 -80108248 + L1MD2 LINE L1 6086 6122 -237 391 235 20 10 chr3 147416390 147416492 -80108086 - L1M4 LINE L1 -3642 2504 2402 1287 166 0 0 chr3 147416529 147416746 -80107832 - AluSg/x SINE Alu 0 310 94 2971 159 35 29 chr3 147416754 147417301 -80107277 + L1MCa LINE L1 335 884 -5542 186 43 0 0 chr3 147417444 147417467 -80107111 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 6280 91 15 6 chr3 147417472 147418488 -80106090 - SVA Other Other -839 1369 432 2326 78 0 0 chr3 147419740 147420034 -80104544 - AluY SINE Alu -17 294 1 2220 82 7 0 chr3 147420038 147420329 -80104249 - AluSp SINE Alu -20 293 1 1171 281 56 30 chr3 147420352 147421017 -80103561 + L1MCa LINE L1 1090 1771 -4657 304 224 0 0 chr3 147421019 147421077 -80103501 + AluJ/monomer SINE Alu 234 291 -11 870 170 0 0 chr3 147422607 147422742 -80101836 + pTR5 LTR ERV1 261 395 -2043 2095 100 17 0 chr3 147422858 147423147 -80101431 - AluSg SINE Alu -16 294 1 374 275 137 60 chr3 147424043 147424276 -80100302 + MLT1L LTR MaLR 204 454 -161 942 189 9 60 chr3 147424280 147424497 -80100081 - L2 LINE L2 0 3313 3108 665 153 38 104 chr3 147424509 147424692 -80099886 - L2 LINE L2 -506 2808 2638 417 294 106 17 chr3 147424818 147424998 -80099580 + MIR SINE MIR 57 252 -10 27 87 0 0 chr3 147425004 147425073 -80099505 + AT_rich Low_complexity Low_complexity 1 69 0 218 188 0 77 chr3 147425073 147425168 -80099410 + (TAA)n Simple_repeat Simple_repeat 1 87 -21 1773 155 18 0 chr3 147425168 147425452 -80099126 + AluSx SINE Alu 1 289 -23 218 188 0 77 chr3 147425452 147425473 -80099105 + (TAA)n Simple_repeat Simple_repeat 87 108 0 365 253 283 6 chr3 147426733 147426899 -80097679 + MIR SINE MIR 49 260 -2 233 214 0 0 chr3 147428251 147428293 -80096285 + (TTCA)n Simple_repeat Simple_repeat 3 44 0 1578 226 59 66 chr3 147428899 147429460 -80095118 - LTR67 LTR ERVL 0 557 1 1653 158 26 0 chr3 147430608 147430880 -80093698 + AluJb SINE Alu 1 279 -33 183 42 0 0 chr3 147430882 147430906 -80093672 + (CAA)n Simple_repeat Simple_repeat 1 24 0 294 309 0 0 chr3 147431194 147431288 -80093290 + MER117 DNA MER1_type 100 193 -4 225 0 0 0 chr3 147431355 147431380 -80093198 + (TG)n Simple_repeat Simple_repeat 1 25 0 971 182 29 0 chr3 147431404 147431574 -80093004 - MER5A DNA MER1_type -1 188 14 722 236 89 35 chr3 147432089 147432347 -80092231 - L1MB7 LINE L1 0 6184 5913 231 211 144 19 chr3 147433550 147433654 -80090924 + MIR SINE MIR 28 144 -118 809 148 0 0 chr3 147433838 147433960 -80090618 - FLAM_C SINE Alu -11 122 1 1064 117 17 34 chr3 147433960 147434139 -80090439 + MER6 DNA MER2_type 690 865 0 335 362 0 36 chr3 147434198 147434336 -80090242 - L2 LINE L2 -1 3271 3139 556 176 17 8 chr3 147435701 147435820 -80088758 - L1MC/D LINE L1 -583 5776 5657 303 239 137 51 chr3 147435819 147435967 -80088611 - L1MC/D LINE L1 -737 5447 5278 * 1985 83 113 0 chr3 147435967 147436233 -80088345 - AluSp SINE Alu -17 296 1 303 239 137 51 chr3 147436233 147436281 -80088297 - L1MC/D LINE L1 -906 5278 5236 2122 98 44 17 chr3 147436996 147437292 -80087286 + AluSq SINE Alu 1 304 -9 886 250 43 35 chr3 147437323 147437691 -80086887 + L1MC5 LINE L1 7515 7885 -76 750 175 17 8 chr3 147437693 147437813 -80086765 + FLAM_C SINE Alu 2 122 -11 2423 47 4 0 chr3 147437887 147438165 -80086413 + AluY SINE Alu 1 279 -32 536 84 0 0 chr3 147438353 147438424 -80086154 + AluSc SINE Alu 155 225 -84 569 241 110 72 chr3 147439830 147440120 -80084458 + LTR37B LTR ERV1 3 303 -165 1077 110 0 0 chr3 147440277 147440413 -80084165 + AluSq/x SINE Alu 1 136 -176 2377 68 4 0 chr3 147440414 147440693 -80083885 + AluSx SINE Alu 1 280 -32 856 110 0 116 chr3 147440881 147441036 -80083542 + AluSg/x SINE Alu 157 293 -19 722 250 12 6 chr3 147441151 147441319 -80083259 + MER5A DNA MER1_type 1 169 -20 304 369 7 14 chr3 147441347 147441488 -80083090 + MIR3 SINE MIR 9 148 -60 965 66 8 0 chr3 147441592 147441714 -80082864 - AluY SINE Alu -1 310 188 1888 101 0 4 chr3 147441820 147442058 -80082520 - AluSx SINE Alu -75 237 1 195 129 0 0 chr3 147442487 147442518 -80082060 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 282 288 68 8 chr3 147442574 147442692 -80081886 + LTR67 LTR ERVL 431 555 -2 267 278 126 20 chr3 147443274 147443425 -80081153 + LTR67 LTR ERVL 99 265 -292 2348 92 0 7 chr3 147444862 147445166 -80079412 - AluSc SINE Alu -7 302 1 1870 156 0 0 chr3 147445583 147445865 -80078713 + AluJo SINE Alu 26 307 -5 1262 282 118 13 chr3 147446003 147446503 -80078075 - L2 LINE L2 -38 3275 2714 190 365 87 29 chr3 147446809 147447017 -80077561 + L2 LINE L2 2824 3043 -229 1781 96 0 25 chr3 147447260 147447500 -80077078 + AluY SINE Alu 62 295 -16 369 239 92 23 chr3 147447983 147448113 -80076465 - MIR SINE MIR -108 154 16 1136 199 0 19 chr3 147448270 147448486 -80076092 - AluJo SINE Alu -17 295 84 747 281 17 43 chr3 147448829 147449064 -80075514 - MIR SINE MIR -1 261 33 243 276 107 78 chr3 147449670 147449844 -80074734 - MIR3 SINE MIR -27 181 10 1840 112 11 4 chr3 147450126 147450394 -80074184 - THE1C LTR MaLR 0 375 106 186 43 0 0 chr3 147450495 147450518 -80074060 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1942 106 26 7 chr3 147450520 147450793 -80073785 - AluSc SINE Alu -31 278 1 935 125 0 0 chr3 147450796 147450924 -80073654 - AluSq/x SINE Alu -181 132 5 1666 168 24 0 chr3 147451166 147451458 -80073120 - AluSp SINE Alu -14 299 1 225 0 0 0 chr3 147451468 147451493 -80073085 + (T)n Simple_repeat Simple_repeat 1 25 0 229 231 183 10 chr3 147452464 147452568 -80072010 + L1M4 LINE L1 4519 4640 -1506 1354 142 98 33 chr3 147452575 147452850 -80071728 - MSTA LTR MaLR 0 428 136 2063 88 0 27 chr3 147453052 147453314 -80071264 + AluSc SINE Alu 36 290 -19 719 267 112 0 chr3 147453343 147453575 -80071003 - MIR SINE MIR -3 259 2 460 313 39 63 chr3 147453576 147453860 -80070718 + L3 LINE CR1 1297 1573 -4 694 126 10 10 chr3 147454657 147454760 -80069818 - AluSg/x SINE Alu -19 293 191 305 196 0 0 chr3 147454861 147454917 -80069661 + MLT1B LTR MaLR 333 388 -2 194 270 20 100 chr3 147455434 147455534 -80069044 - MIR3 SINE MIR 0 208 117 247 377 49 0 chr3 147455732 147455854 -80068724 - MIR3 SINE MIR -14 194 67 672 48 0 0 chr3 147456208 147456292 -80068286 + MER30B DNA MER1_type 1 84 -106 1906 167 13 19 chr3 147456380 147456691 -80067887 + AluJo SINE Alu 1 309 -3 23 0 0 0 chr3 147456749 147456772 -80067806 + AT_rich Low_complexity Low_complexity 1 23 0 771 89 193 0 chr3 147456794 147456929 -80067649 + MER30B DNA MER1_type 70 230 0 2470 81 0 0 chr3 147457041 147457348 -80067230 - AluY SINE Alu -4 307 1 261 192 77 0 chr3 147457598 147457676 -80066902 + L1MB2 LINE L1 5933 6016 -155 984 226 0 0 chr3 147457790 147458038 -80066540 - L1P LINE L1 -1578 4568 4321 2512 11 0 0 chr3 147458038 147458307 -80066271 - AluYb8 SINE Alu 0 318 50 305 300 20 20 chr3 147460039 147460139 -80064439 + MIR3 SINE MIR 63 162 -46 313 306 130 0 chr3 147460294 147460402 -80064176 - L2 LINE L2 0 3313 3192 206 286 0 18 chr3 147460411 147460467 -80064111 + MIR3 SINE MIR 151 205 -3 842 259 24 5 chr3 147460553 147460758 -80063820 + MIR SINE MIR 18 226 -36 239 311 0 0 chr3 147460983 147461044 -80063534 + L2 LINE L2 3252 3312 -1 1006 148 0 0 chr3 147461368 147461510 -80063068 + AluSg/x SINE Alu 139 280 -30 25 0 0 0 chr3 147461544 147461569 -80063009 + AT_rich Low_complexity Low_complexity 1 25 0 2073 176 53 37 chr3 147461713 147461869 -80062709 + MER65C LTR ERV1 1 153 -308 2244 110 3 10 chr3 147461869 147462178 -80062400 - AluSq SINE Alu -6 307 1 2073 176 53 37 chr3 147462178 147462475 -80062103 + MER65C LTR ERV1 153 461 0 883 129 0 0 chr3 147462746 147462870 -80061708 - FLAM_C SINE Alu -9 124 1 273 75 0 0 chr3 147463094 147463134 -80061444 + (TCCCC)n Simple_repeat Simple_repeat 3 42 0 762 269 60 80 chr3 147463271 147463773 -80060805 + L1MEd LINE L1 79 570 -5549 5300 100 25 0 chr3 147463775 147464563 -80060015 + L1PB1 LINE L1 5342 6149 -2 289 195 153 25 chr3 147464640 147464758 -80059820 + L1MEd LINE L1 661 793 -5326 310 270 79 16 chr3 147464872 147464998 -80059580 + L1M4 LINE L1 4944 5077 -1069 399 254 278 5 chr3 147465180 147465262 -80059316 - L2 LINE L2 -162 3151 3093 2289 99 7 0 chr3 147465262 147465555 -80059023 + AluSx SINE Alu 1 295 -17 399 254 278 5 chr3 147465555 147465681 -80058897 - L2 LINE L2 -220 3093 2886 204 277 164 23 chr3 147465704 147465881 -80058697 - L2 LINE L2 -563 2751 2550 266 149 0 0 chr3 147466490 147466537 -80058041 - Alu SINE Alu -3 305 259 2077 150 60 15 chr3 147466638 147467037 -80057541 + L1MC1 LINE L1 5901 6317 -16 660 162 35 35 chr3 147467044 147467186 -80057392 + FLAM_C SINE Alu 2 143 0 503 308 61 14 chr3 147467238 147467452 -80057126 + Charlie8 DNA MER1_type 13 236 -2181 2500 76 0 0 chr3 147467537 147467841 -80056737 + AluSx SINE Alu 1 304 -8 442 263 38 0 chr3 147470665 147470798 -80053780 - MLT2C1 LTR ERVL -229 168 31 192 305 130 22 chr3 147471829 147472052 -80052526 - L2 LINE L2 -559 2755 2509 1908 173 31 11 chr3 147472295 147472676 -80051902 + MLT1B LTR MaLR 1 389 -1 255 301 68 10 chr3 147472744 147472847 -80051731 + L2 LINE L2 3204 3312 -1 882 271 131 41 chr3 147473260 147473648 -80050930 + MLT1K LTR MaLR 151 573 -15 321 322 133 36 chr3 147474172 147474557 -80050021 + MLT1K LTR MaLR 2 423 -165 619 216 78 20 chr3 147474636 147474789 -80049789 - MIR SINE MIR -11 251 90 286 284 112 9 chr3 147474953 147475069 -80049509 + MIR SINE MIR 16 143 -65 2409 98 0 0 chr3 147475390 147475687 -80048891 - AluSx SINE Alu -11 301 5 432 242 115 73 chr3 147475700 147475865 -80048713 - MIR SINE MIR -8 254 83 297 331 15 22 chr3 147475935 147476071 -80048507 - MIR SINE MIR -119 143 9 225 241 0 17 chr3 147476424 147476482 -80048096 + C-rich Low_complexity Low_complexity 2 58 0 839 294 145 10 chr3 147477359 147477760 -80046818 + MLT1K LTR MaLR 132 586 -2 201 204 41 0 chr3 147477760 147477809 -80046769 + GA-rich Low_complexity Low_complexity 3 53 0 217 306 14 14 chr3 147478335 147478407 -80046171 + L2 LINE L2 3200 3271 -1 301 284 110 65 chr3 147478770 147479199 -80045379 + L1MEd LINE L1 498 945 -5174 269 309 59 29 chr3 147479277 147479413 -80045165 + MIR SINE MIR 82 221 -41 443 281 133 20 chr3 147479838 147480041 -80044537 + MIR SINE MIR 34 259 -3 184 169 84 70 chr3 147480202 147480273 -80044305 + MIR SINE MIR 63 134 -74 2217 123 10 0 chr3 147480344 147480653 -80043925 + AluSx SINE Alu 1 312 0 582 252 110 7 chr3 147480766 147480921 -80043657 + MIR SINE MIR 20 190 -72 464 264 195 56 chr3 147481263 147481875 -80042703 + L2 LINE L2 2549 3255 -17 191 367 41 27 chr3 147481976 147482123 -80042455 - MIR SINE MIR -79 183 35 642 261 7 0 chr3 147482163 147482301 -80042277 + MIR SINE MIR 123 261 -1 794 192 0 11 chr3 147482411 147482593 -80041985 + (TGGG)n Simple_repeat Simple_repeat 1 180 0 368 206 0 11 chr3 147482598 147482690 -80041888 + (TGGA)n Simple_repeat Simple_repeat 1 91 0 431 204 126 0 chr3 147483570 147483673 -80040905 + L2 LINE L2 3180 3295 -18 26 50 0 0 chr3 147484760 147484800 -80039778 + GC_rich Low_complexity Low_complexity 1 40 0 327 208 25 6 chr3 147486777 147486866 -80037712 + L1ME1 LINE L1 5668 5755 -407 2432 83 0 13 chr3 147487120 147487434 -80037144 + AluSx SINE Alu 1 310 -2 321 221 47 12 chr3 147487929 147488015 -80036563 - L1ME4a LINE L1 -74 6047 5959 379 182 39 0 chr3 147488018 147488095 -80036483 + L1ME1 LINE L1 6014 6093 -73 3579 221 29 7 chr3 147488591 147489666 -80034912 + L1MB8 LINE L1 5076 6177 -1 786 216 68 127 chr3 147489869 147490356 -80034222 + MLT1H LTR MaLR 92 549 0 1807 245 114 22 chr3 147490586 147491129 -80033449 - MLT1G1 LTR MaLR -1 594 2 228 341 66 0 chr3 147491130 147491221 -80033357 - MER5A DNA MER1_type -58 131 35 256 289 91 41 chr3 147491710 147491831 -80032747 + MIR3 SINE MIR 6 132 -76 408 259 106 6 chr3 147491988 147492158 -80032420 + L2 LINE L2 2864 3050 -222 451 263 86 13 chr3 147492230 147492382 -80032196 + MIR3 SINE MIR 7 169 -39 192 260 40 0 chr3 147493439 147493489 -80031089 - L2 LINE L2 0 3313 3262 318 258 56 0 chr3 147494117 147494206 -80030372 - MIR SINE MIR -66 196 103 934 97 15 0 chr3 147494264 147494391 -80030187 + AluSp/q SINE Alu 175 306 -7 2324 92 3 0 chr3 147494391 147494685 -80029893 - AluSx SINE Alu -17 295 1 339 277 77 54 chr3 147494833 147495093 -80029485 - MLT1H LTR MaLR -198 351 86 2710 80 33 33 chr3 147495176 147495574 -80029004 - MER48 LTR ERV1 0 398 1 323 270 0 18 chr3 147495579 147495690 -80028888 - L1 LINE L1 -3656 2490 2382 2235 132 0 3 chr3 147496048 147496351 -80028227 - AluSx SINE Alu -10 302 1 2287 110 0 0 chr3 147496447 147496748 -80027830 - AluSx SINE Alu -9 303 3 566 312 81 10 chr3 147496800 147497095 -80027483 - L1ME4a LINE L1 -316 5805 5490 189 0 0 0 chr3 147497654 147497675 -80026903 + (T)n Simple_repeat Simple_repeat 1 21 0 257 228 13 38 chr3 147498288 147498367 -80026211 + MER5A DNA MER1_type 12 88 -101 2123 128 3 0 chr3 147498410 147498706 -80025872 - AluSx SINE Alu -15 297 1 186 209 0 0 chr3 147498785 147498828 -80025750 + (TG)n Simple_repeat Simple_repeat 2 44 0 334 300 47 40 chr3 147499625 147499775 -80024803 - L1ME4a LINE L1 -19 6102 5952 2298 101 0 0 chr3 147499790 147500086 -80024492 - AluSx SINE Alu -16 296 1 352 261 123 8 chr3 147500140 147500270 -80024308 + MIR SINE MIR 20 164 -98 373 250 9 45 chr3 147500270 147500382 -80024196 + MER97a DNA MER1_type? 1 108 -786 * 497 148 0 70 chr3 147500365 147500447 -80024131 - MER104 DNA Tc2 -1791 107 34 1684 187 67 0 chr3 147500447 147500730 -80023848 + AluJb SINE Alu 4 305 -7 497 148 0 70 chr3 147500730 147500762 -80023816 - MER104 DNA Tc2 -1864 34 1 1282 152 38 0 chr3 147500923 147501134 -80023444 - MER20 DNA MER1_type 0 219 1 223 267 200 0 chr3 147501227 147501317 -80023261 + MER5A DNA MER1_type 6 113 -76 1797 167 7 21 chr3 147501500 147501787 -80022791 - AluJo SINE Alu -28 284 2 299 250 65 24 chr3 147501870 147501994 -80022584 - L1ME4a LINE L1 -2 6119 5991 1956 166 48 29 chr3 147502216 147502761 -80021817 - MLT2A2 LTR ERVL 0 554 1 298 313 99 0 chr3 147503475 147503635 -80020943 + MIR SINE MIR 31 203 -59 13100 121 40 19 chr3 147503826 147505336 -80019242 + Tigger1 DNA MER2_type 2 1479 -939 2207 123 0 0 chr3 147505336 147505629 -80018949 + AluSx SINE Alu 3 295 -17 2441 94 0 0 chr3 147505629 147505936 -80018642 + AluY SINE Alu 1 307 -4 13100 121 40 19 chr3 147505936 147506577 -80018001 + Tigger1 DNA MER2_type 1479 2203 -215 2001 157 13 0 chr3 147506577 147506876 -80017702 - AluJb SINE Alu -9 303 1 13100 121 40 19 chr3 147506876 147506906 -80017672 + Tigger1 DNA MER2_type 2203 2231 -187 691 275 23 0 chr3 147506950 147506980 -80017598 - FRAM SINE Alu -137 175 147 7559 31 14 0 chr3 147506980 147506992 -80017586 - L1PA5 LINE L1 0 6154 6144 225 0 0 0 chr3 147506992 147507017 -80017561 + (TA)n Simple_repeat Simple_repeat 1 25 0 7559 31 14 0 chr3 147507017 147508378 -80016200 - L1PA5 LINE L1 -10 6144 4773 691 275 23 0 chr3 147508378 147508518 -80016060 - FRAM SINE Alu -165 147 1 974 142 58 5 chr3 147508520 147508710 -80015868 + Tigger1 DNA MER2_type 2217 2416 -2 2235 113 3 0 chr3 147509094 147509387 -80015191 - AluSq SINE Alu -19 294 1 377 278 83 61 chr3 147510161 147510341 -80014237 - MIR SINE MIR -50 212 29 292 294 51 28 chr3 147510532 147510787 -80013791 - L1M4 LINE L1 -1555 4591 4331 365 319 146 0 chr3 147510789 147510933 -80013645 + MER5A DNA MER1_type 25 189 0 939 93 0 53 chr3 147511342 147511567 -80013011 + (TCCA)n Simple_repeat Simple_repeat 1 213 0 2328 68 4 0 chr3 147511817 147512125 -80012453 - AluY SINE Alu 0 309 1 2320 123 0 0 chr3 147512125 147512426 -80012152 - AluSx SINE Alu -11 301 1 192 347 54 69 chr3 147512507 147512784 -80011794 - L3 LINE CR1 -7 1570 1298 250 196 54 0 chr3 147512787 147512843 -80011735 - L2 LINE L2 -27 3245 3187 2433 93 3 0 chr3 147513289 147513590 -80010988 - AluSp SINE Alu -11 302 1 328 288 163 49 chr3 147513680 147513968 -80010610 - L1M4 LINE L1 -743 5403 5083 590 221 26 0 chr3 147513973 147514086 -80010492 + FLAM_A SINE Alu 1 116 -17 2166 121 3 3 chr3 147514091 147514389 -80010189 - AluSq SINE Alu -13 300 3 360 230 145 33 chr3 147514536 147514688 -80009890 - L1M4 LINE L1 -1053 5093 4925 279 313 43 9 chr3 147514841 147514956 -80009622 - MIR SINE MIR -32 230 112 548 267 50 25 chr3 147515594 147515755 -80008823 - MIR SINE MIR -70 192 28 333 274 66 0 chr3 147515984 147516090 -80008488 - MIR SINE MIR -96 166 54 1670 178 50 4 chr3 147516528 147516809 -80007769 - AluJo SINE Alu -17 295 2 484 72 84 48 chr3 147517174 147517197 -80007381 - AluSc SINE Alu -217 92 71 1817 98 0 4 chr3 147517197 147517432 -80007146 - AluSg SINE Alu -17 293 60 1256 156 98 122 chr3 147517432 147517893 -80006685 - LTR7 LTR ERV1 0 450 1 484 72 84 48 chr3 147517893 147517951 -80006627 - AluSc SINE Alu -237 72 7 610 251 128 10 chr3 147517999 147518194 -80006384 + MIR SINE MIR 4 221 -41 428 312 97 5 chr3 147518520 147518706 -80005872 + MIR SINE MIR 1 203 -59 630 242 95 0 chr3 147518765 147518955 -80005623 + MER20 DNA MER1_type 5 212 -7 21 0 0 0 chr3 147519014 147519035 -80005543 + AT_rich Low_complexity Low_complexity 1 21 0 2373 81 3 3 chr3 147519066 147519363 -80005215 - AluSp SINE Alu -16 297 1 340 264 153 18 chr3 147519648 147519811 -80004767 - MIR SINE MIR -46 216 32 2432 92 0 0 chr3 147519913 147520219 -80004359 + AluY SINE Alu 1 306 -5 752 251 35 10 chr3 147520469 147520672 -80003906 + MER3 DNA MER1_type 2 209 0 567 250 45 0 chr3 147520678 147520810 -80003768 + MER5B DNA MER1_type 12 149 -29 2173 116 75 55 chr3 147521383 147521822 -80002756 - LTR7 LTR ERV1 -2 448 1 2478 79 45 13 chr3 147521822 147522202 -80002376 - HERVH LTR ERV1 0 7713 7322 1320 124 23 9 chr3 147522200 147522417 -80002161 - HERVH LTR ERV1 -1894 5819 5600 * 3678 121 2 7 chr3 147522493 147523053 -80001525 - HERVH LTR ERV1 -2669 5044 4488 3109 112 25 0 chr3 147523055 147523537 -80001041 - HERVH LTR ERV1 -3720 3993 3500 872 135 20 0 chr3 147523536 147523684 -80000894 - HERVH LTR ERV1 -4423 3290 3140 * 15118 87 18 15 chr3 147523678 147526527 -79998051 - HERVH LTR ERV1 -4726 2987 3 2060 118 88 51 chr3 147526531 147526963 -79997615 - LTR7 LTR ERV1 -2 448 1 1050 204 133 37 chr3 147527188 147527540 -79997038 - HAL1 LINE L1 -698 1809 1424 2298 120 3 0 chr3 147527543 147527852 -79996726 - AluSp SINE Alu -3 310 1 2017 148 0 0 chr3 147527873 147528157 -79996421 - AluJb SINE Alu -23 289 6 607 176 85 173 chr3 147528222 147528551 -79996027 - L1MD2 LINE L1 -18 6224 5925 1278 194 119 51 chr3 147528551 147528964 -79995614 + MLT1C LTR MaLR 1 441 -26 323 173 0 53 chr3 147528978 147529053 -79995525 - L1MD2 LINE L1 -430 5929 5859 * 933 157 68 21 chr3 147529052 147529288 -79995290 - L1MDa LINE L1 -3918 2622 2376 303 233 151 68 chr3 147529621 147529767 -79994811 + L1MC5 LINE L1 7794 7951 -10 26 30 0 0 chr3 147529767 147529800 -79994778 + AT_rich Low_complexity Low_complexity 1 33 0 374 294 65 65 chr3 147530248 147530523 -79994055 - L2 LINE L2 -194 3078 2804 236 311 33 0 chr3 147531369 147531459 -79993119 - MIR3 SINE MIR -8 200 108 205 308 39 26 chr3 147531858 147531936 -79992642 - MIR SINE MIR -100 108 30 216 0 0 0 chr3 147532298 147532322 -79992256 + (T)n Simple_repeat Simple_repeat 1 24 0 192 239 0 0 chr3 147532375 147532421 -79992157 - L2 LINE L2 -1 3312 3267 1135 254 64 27 chr3 147532499 147532904 -79991674 + LTR16C LTR ERVL 61 480 -11 252 234 31 0 chr3 147533090 147533154 -79991424 + MER116 DNA Mariner 1 66 -14 1569 163 8 0 chr3 147533250 147533496 -79991082 - AluSx SINE Alu -64 248 1 557 288 103 9 chr3 147533589 147533822 -79990756 - MLT1J LTR MaLR -205 306 52 22 56 0 0 chr3 147534134 147534170 -79990408 + AT_rich Low_complexity Low_complexity 1 36 0 538 293 100 15 chr3 147534218 147534448 -79990130 + MIR SINE MIR 2 251 -11 857 260 27 0 chr3 147534556 147534775 -79989803 - MIR SINE MIR -25 237 13 3961 144 53 65 chr3 147534888 147535798 -79988780 - pTR5 LTR ERV1 0 2606 1524 916 224 65 47 chr3 147535929 147536143 -79988435 - AluJo SINE Alu -92 220 3 229 245 0 0 chr3 147536145 147536194 -79988384 + L1ME1 LINE L1 4845 4893 -1253 1786 231 51 24 chr3 147536199 147536299 -79988279 + L1ME1 LINE L1 5270 5366 -800 2124 122 7 14 chr3 147536299 147536595 -79987983 + AluSx SINE Alu 5 298 -14 1786 231 51 24 chr3 147536595 147537026 -79987552 + L1ME1 LINE L1 5366 5815 -351 838 158 0 22 chr3 147537036 147537175 -79987403 + AluJo SINE Alu 1 136 -176 983 226 30 39 chr3 147537217 147537549 -79987029 + L1ME1 LINE L1 5838 6166 0 2034 134 7 7 chr3 147537765 147538070 -79986508 - AluSx SINE Alu -5 307 3 1962 158 3 7 chr3 147538092 147538389 -79986189 - AluJb SINE Alu -16 296 1 1304 205 118 46 chr3 147538529 147538995 -79985583 + MER66A LTR ERV1 101 478 0 449 222 30 0 chr3 147539000 147539099 -79985479 - MLT1E2 LTR MaLR -137 489 388 201 277 15 15 chr3 147540353 147540418 -79984160 + MIR3 SINE MIR 123 187 -21 1669 122 8 46 chr3 147540489 147540751 -79983827 + AluSx SINE Alu 56 307 -5 2052 102 31 14 chr3 147540801 147540936 -79983642 + AluSq SINE Alu 1 132 -181 2428 62 0 26 chr3 147540936 147541261 -79983317 + AluY SINE Alu 1 311 0 2052 102 31 14 chr3 147541261 147541418 -79983160 + AluSq SINE Alu 132 298 -15 2104 108 35 0 chr3 147543199 147543485 -79981093 + AluY SINE Alu 1 296 -15 2077 116 0 4 chr3 147543601 147543876 -79980702 + AluSx SINE Alu 1 274 -38 392 164 0 0 chr3 147543876 147543949 -79980629 + (CAGG)n Simple_repeat Simple_repeat 2 74 0 325 0 0 24 chr3 147543949 147543990 -79980588 + (CA)n Simple_repeat Simple_repeat 2 41 0 1713 163 45 9 chr3 147544312 147544644 -79979934 - MER2 DNA MER2_type 0 344 1 206 232 61 24 chr3 147544933 147545015 -79979563 + L2 LINE L2 3221 3305 -8 349 306 50 6 chr3 147545883 147546201 -79978377 + (CTGGGG)n Simple_repeat Simple_repeat 1 332 0 490 266 41 0 chr3 147546206 147546375 -79978203 + G-rich Low_complexity Low_complexity 3 178 0 188 83 0 28 chr3 147546475 147546511 -79978067 + (CCGGG)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr3 147546865 147546886 -79977692 + AT_rich Low_complexity Low_complexity 1 21 0 857 101 0 72 chr3 147547216 147547300 -79977278 + AluSc SINE Alu 1 73 -236 2266 70 20 17 chr3 147547300 147547601 -79976977 + AluY SINE Alu 1 302 -9 857 101 0 72 chr3 147547601 147547655 -79976923 + AluSc SINE Alu 73 129 -180 1968 114 0 30 chr3 147547661 147547959 -79976619 + AluY SINE Alu 3 291 -20 1531 112 0 30 chr3 147547959 147548024 -79976554 + AluSg/x SINE Alu 73 138 -172 2358 90 0 29 chr3 147548024 147548334 -79976244 + AluY SINE Alu 3 303 -8 1531 112 0 30 chr3 147548334 147548500 -79976078 + AluSg/x SINE Alu 138 297 -13 33 43 0 0 chr3 147549968 147550015 -79974563 + GC_rich Low_complexity Low_complexity 1 47 0 795 280 197 30 chr3 147550528 147550986 -79973592 + L3 LINE CR1 670 1231 -346 2527 79 0 0 chr3 147550986 147551291 -79973287 - AluSq SINE Alu -8 305 1 795 280 197 30 chr3 147551291 147551364 -79973214 + L3 LINE CR1 1231 1290 -287 2318 99 10 0 chr3 147552289 147552592 -79971986 + AluSq SINE Alu 1 306 -7 212 91 36 36 chr3 147552694 147552749 -79971829 + CT-rich Low_complexity Low_complexity 3 57 0 328 215 0 0 chr3 147552921 147552986 -79971592 - L1MC5 LINE L1 -1160 6801 6737 414 284 128 79 chr3 147553024 147553834 -79970744 - HAL1 LINE L1 -1572 935 86 2065 155 0 0 chr3 147553836 147554139 -79970439 + AluSx SINE Alu 1 303 -9 1075 143 30 24 chr3 147554273 147554441 -79970137 - AluJo SINE Alu -143 169 1 263 105 0 0 chr3 147554601 147554639 -79969939 + tRNA-Gln-CAG tRNA tRNA 1 38 -37 183 297 81 0 chr3 147555250 147555324 -79969254 - MIR SINE MIR -63 145 66 225 220 144 93 chr3 147557056 147557174 -79967404 + MIR SINE MIR 29 152 -110 2288 117 3 0 chr3 147557601 147557908 -79966670 + AluSq SINE Alu 1 308 -5 1684 123 146 4 chr3 147558194 147558462 -79966116 + AluSx SINE Alu 1 306 -6 1318 119 0 0 chr3 147558462 147558638 -79965940 + AluSg/x SINE Alu 132 307 -3 22 0 0 0 chr3 147559368 147559390 -79965188 + AT_rich Low_complexity Low_complexity 1 22 0 1308 79 0 6 chr3 147559563 147559727 -79964851 + AluSx SINE Alu 1 163 -149 329 161 383 0 chr3 147560120 147560201 -79964377 + MIR SINE MIR 35 146 -116 3014 109 67 0 chr3 147560253 147560719 -79963859 + LOR1a LTR ERV1 1 497 0 2537 122 127 7 chr3 147561277 147561820 -79962758 - LTR12 LTR ERV1 -226 2212 66 260 250 0 0 chr3 147561820 147561872 -79962706 - LTR30 LTR ERV1 -670 52 1 570 203 68 43 chr3 147562058 147562265 -79962313 - Charlie1 DNA MER1_type 0 2761 2550 353 188 29 0 chr3 147562257 147562326 -79962252 + AluYa5 SINE Alu 122 192 -109 * 3437 129 86 68 chr3 147562326 147563103 -79961475 + pTR5 LTR ERV1 749 1539 -899 1718 163 0 0 chr3 147563203 147563460 -79961118 + AluSx SINE Alu 50 306 -6 4091 227 39 21 chr3 147563496 147564022 -79960556 + L1MC4a LINE L1 2402 2917 -3229 1933 140 0 40 chr3 147564022 147564344 -79960234 + AluSx SINE Alu 1 309 -3 4091 227 39 21 chr3 147564344 147564834 -79959744 + L1MC4a LINE L1 2917 3448 -2698 2520 67 0 13 chr3 147564834 147565147 -79959431 + AluY SINE Alu 1 309 -2 4091 227 39 21 chr3 147565147 147565405 -79959173 + L1MC4a LINE L1 3448 3700 -2446 263 268 0 24 chr3 147567785 147567867 -79956711 + L2 LINE L2 3191 3270 -43 2258 238 45 5 chr3 147567870 147568489 -79956089 + L1MC4a LINE L1 3682 4325 -1821 2069 101 44 20 chr3 147568493 147568791 -79955787 - AluY SINE Alu -6 305 1 2402 84 0 7 chr3 147569605 147569904 -79954674 - AluSc SINE Alu -12 297 1 353 257 79 61 chr3 147570877 147571091 -79953487 + L1MC4a LINE L1 5733 5950 -1858 283 264 103 0 chr3 147571455 147571542 -79953036 + L1MD2 LINE L1 5564 5659 -505 509 232 182 23 chr3 147571625 147571845 -79952733 + L1ME3A LINE L1 5888 6142 -28 * 1086 211 68 30 chr3 147571843 147572100 -79952478 + L1MD2 LINE L1 5794 6069 -290 1588 181 8 4 chr3 147572100 147572359 -79952219 - AluJo SINE Alu -52 260 1 1086 211 68 30 chr3 147572359 147572438 -79952140 + L1MD2 LINE L1 6069 6143 -216 558 283 21 0 chr3 147572439 147572584 -79951994 + L1MD2 LINE L1 6196 6343 -16 2365 102 0 0 chr3 147573643 147573938 -79950640 + AluSg SINE Alu 1 295 -15 387 311 25 12 chr3 147574411 147574572 -79950006 - L1MC4 LINE L1 -548 7494 7332 288 360 125 0 chr3 147574800 147574936 -79949642 - L2 LINE L2 -1 3271 3119 220 296 40 56 chr3 147576178 147576303 -79948275 + MIR SINE MIR 107 229 -33 215 308 75 19 chr3 147577386 147577493 -79947085 - L2 LINE L2 -19 3294 3182 2391 102 0 28 chr3 147577555 147577877 -79946701 - AluSq SINE Alu 0 313 1 225 0 23 70 chr3 147577878 147577921 -79946657 + (TTTTG)n Simple_repeat Simple_repeat 2 42 0 1731 159 0 0 chr3 147577921 147578166 -79946412 - AluSx SINE Alu -28 284 40 2286 82 7 0 chr3 147579311 147579602 -79944976 + AluSg SINE Alu 7 299 -11 2043 94 7 7 chr3 147580866 147581181 -79943397 - AluSg SINE Alu 0 310 1 192 135 0 0 chr3 147582754 147582791 -79941787 + (T)n Simple_repeat Simple_repeat 1 37 0 2290 72 7 39 chr3 147583033 147583340 -79941238 - AluSp SINE Alu -16 297 1 1696 140 77 11 chr3 147583344 147583630 -79940948 - AluSx SINE Alu -5 307 3 308 156 0 0 chr3 147583632 147583677 -79940901 - Alu SINE Alu -254 45 1 2299 99 10 0 chr3 147584689 147584993 -79939585 + AluY SINE Alu 1 307 -4 1781 112 66 0 chr3 147584995 147585253 -79939325 + AluSx SINE Alu 29 303 -9 1185 59 0 0 chr3 147585255 147585390 -79939188 + AluYb8 SINE Alu 3 137 -181 255 258 76 0 chr3 147585728 147585794 -79938784 + MIR SINE MIR 192 262 0 501 241 184 0 chr3 147585795 147585969 -79938609 - MIR SINE MIR -15 247 42 1178 47 0 47 chr3 147586226 147586374 -79938204 - AluY SINE Alu -170 141 1 423 223 11 11 chr3 147586615 147586709 -79937869 - MER5A DNA MER1_type -80 109 16 2549 51 7 0 chr3 147586937 147587233 -79937345 - AluY SINE Alu -13 298 1 253 220 36 0 chr3 147588629 147588715 -79935863 - MIR SINE MIR -76 132 40 1359 65 0 24 chr3 147593490 147593660 -79930918 - AluY SINE Alu -145 166 1 465 259 134 44 chr3 147595417 147595674 -79928904 + HAL1 LINE L1 925 1157 -1350 2193 96 0 0 chr3 147595674 147595946 -79928632 + AluSx SINE Alu 1 272 -40 465 259 134 44 chr3 147595946 147595958 -79928620 + HAL1 LINE L1 1157 1167 -1340 240 35 0 0 chr3 147595958 147595987 -79928591 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 465 259 134 44 chr3 147595987 147596194 -79928384 + HAL1 LINE L1 1167 1445 -1062 1213 216 67 22 chr3 147596207 147596564 -79928014 + HAL1 LINE L1 1528 1900 -607 287 393 53 8 chr3 147596566 147596810 -79927768 + L1MEc LINE L1 43 297 -6099 1622 86 5 14 chr3 147596910 147597119 -79927459 - AluSg SINE Alu -103 207 1 22 56 0 0 chr3 147597252 147597288 -79927290 + AT_rich Low_complexity Low_complexity 1 36 0 2308 113 3 0 chr3 147597523 147597825 -79926753 - AluSp SINE Alu -10 303 1 180 0 0 0 chr3 147598407 147598427 -79926151 + (TTAG)n Simple_repeat Simple_repeat 2 21 0 239 136 0 0 chr3 147598427 147598471 -79926107 - Alu SINE Alu -2 298 255 2349 81 18 0 chr3 147598471 147598756 -79925822 - AluSg SINE Alu -19 291 2 1728 177 28 0 chr3 147599051 147599334 -79925244 + AluJb SINE Alu 1 291 -21 2286 98 0 7 chr3 147599343 147599638 -79924940 + AluSx SINE Alu 1 293 -19 923 196 13 7 chr3 147599638 147599791 -79924787 + AluJb SINE Alu 134 287 -25 2214 125 3 0 chr3 147599797 147600094 -79924484 + AluSx SINE Alu 1 298 -14 34 79 0 0 chr3 147600194 147600270 -79924308 + AT_rich Low_complexity Low_complexity 1 76 0 353 278 220 21 chr3 147600341 147600532 -79924046 + L1ME4a LINE L1 5893 6121 0 24 0 0 0 chr3 147600563 147600587 -79923991 + AT_rich Low_complexity Low_complexity 1 24 0 373 127 0 0 chr3 147600740 147600795 -79923783 + U6 snRNA snRNA 3 57 -50 209 213 0 0 chr3 147600797 147600844 -79923734 + A-rich Low_complexity Low_complexity 1 47 0 315 188 47 24 chr3 147601155 147601240 -79923338 - MER112 DNA MER1_type -31 229 143 192 40 0 0 chr3 147601287 147601312 -79923266 + (TG)n Simple_repeat Simple_repeat 2 26 0 1690 210 0 0 chr3 147601486 147601781 -79922797 - AluJb SINE Alu -15 297 3 2219 122 7 0 chr3 147601797 147602092 -79922486 - AluSx SINE Alu -13 299 3 180 0 0 0 chr3 147602725 147602745 -79921833 + (TTA)n Simple_repeat Simple_repeat 2 21 0 2063 108 0 21 chr3 147602747 147603033 -79921545 - AluSx SINE Alu -31 281 2 2394 75 0 7 chr3 147603063 147603358 -79921220 - AluY SINE Alu -14 297 5 1968 149 7 17 chr3 147603361 147603662 -79920916 - AluJo SINE Alu -14 298 1 271 267 171 12 chr3 147604904 147605067 -79919511 + MIR SINE MIR 13 200 -62 1139 16 0 0 chr3 147605230 147605355 -79919223 - AluY SINE Alu -13 298 174 254 309 176 7 chr3 147605665 147605801 -79918777 - L2 LINE L2 0 3313 3155 195 204 0 0 chr3 147606120 147606169 -79918409 + (CCCG)n Simple_repeat Simple_repeat 2 50 0 264 397 69 6 chr3 147607985 147608159 -79916419 + MLT1K LTR MaLR 108 292 -296 591 186 59 0 chr3 147608913 147609031 -79915547 + MLT1D LTR MaLR 1 125 -380 2397 109 0 3 chr3 147609031 147609343 -79915235 + AluSx SINE Alu 1 311 -1 852 180 24 6 chr3 147609343 147609510 -79915068 + AluSq SINE Alu 134 303 -10 269 260 104 21 chr3 147609823 147609919 -79914659 + MIR SINE MIR 114 217 -45 221 256 165 58 chr3 147610281 147610402 -79914176 - MIR3 SINE MIR -62 146 13 1808 130 111 32 chr3 147610521 147610603 -79913975 + MER44D DNA MER2_type 1 75 -2412 2136 118 0 50 chr3 147610603 147610926 -79913652 + AluSq SINE Alu 1 307 -6 2270 113 0 3 chr3 147610935 147611235 -79913343 + AluSx SINE Alu 1 299 -13 1808 130 111 32 chr3 147611235 147611629 -79912949 + MER44D DNA MER2_type 82 593 -12 25 0 0 0 chr3 147612425 147612450 -79912128 + AT_rich Low_complexity Low_complexity 1 25 0 280 255 10 59 chr3 147612517 147612619 -79911959 + L1MC4a LINE L1 6074 6170 -1638 388 193 150 49 chr3 147612657 147612810 -79911768 - MIR3 SINE MIR -41 167 21 578 277 217 0 chr3 147613324 147613624 -79910954 - L2 LINE L2 -98 3215 2851 709 193 0 14 chr3 147614087 147614227 -79910351 - AluSq/x SINE Alu -174 139 2 726 250 47 9 chr3 147614333 147614545 -79910033 + L1ME1 LINE L1 5942 6161 -5 187 259 0 35 chr3 147614831 147614889 -79909689 + MIR SINE MIR 36 91 -117 23 0 0 0 chr3 147615483 147615506 -79909072 + AT_rich Low_complexity Low_complexity 1 23 0 2392 127 46 84 chr3 147616054 147616577 -79908001 + pTR5 LTR ERV1 1526 2295 -143 429 179 13 0 chr3 147616583 147616661 -79907917 + FLAM SINE Alu 49 127 -6 * 897 227 50 81 chr3 147616654 147616975 -79907603 - Charlie1b DNA MER1_type -208 315 5 2039 124 38 0 chr3 147617326 147617617 -79906961 - AluSx SINE Alu -10 302 1 2030 160 16 16 chr3 147617949 147618356 -79906222 - MLT2A2 LTR ERVL -149 304 1 1497 136 4 43 chr3 147618754 147619012 -79905566 + AluJb SINE Alu 1 248 -64 495 259 129 71 chr3 147619170 147619272 -79905306 + MLT1A1 LTR MaLR 39 134 -231 1546 118 144 0 chr3 147619272 147619501 -79905077 + AluJb SINE Alu 37 298 -14 495 259 129 71 chr3 147619501 147619707 -79904871 + MLT1A1 LTR MaLR 134 365 0 609 253 121 47 chr3 147620211 147620281 -79904297 + Charlie8 DNA MER1_type 1 64 -277 2625 64 0 3 chr3 147620281 147620594 -79903984 - AluSq SINE Alu -1 312 1 609 253 121 47 chr3 147620594 147620780 -79903798 + Charlie8 DNA MER1_type 64 276 -65 204 125 42 42 chr3 147621206 147621254 -79903324 + GA-rich Low_complexity Low_complexity 1 48 0 2240 94 0 59 chr3 147622337 147622657 -79901921 + AluSx SINE Alu 1 301 -11 2533 167 45 4 chr3 147622657 147623148 -79901430 + L1MC1 LINE L1 5823 6333 0 199 245 180 33 chr3 147623519 147623644 -79900934 - MIR3 SINE MIR -54 154 13 2030 163 0 0 chr3 147623963 147624264 -79900314 + AluSx SINE Alu 1 301 -11 587 161 0 0 chr3 147624451 147624544 -79900034 + FRAM SINE Alu 65 157 -19 1562 181 118 77 chr3 147624558 147624971 -79899607 + MLT1F1 LTR MaLR 63 500 -67 1586 198 13 25 chr3 147624971 147625285 -79899293 + AluJo SINE Alu 1 310 -2 1562 181 118 77 chr3 147625285 147625353 -79899225 + MLT1F1 LTR MaLR 500 564 -3 1001 228 18 5 chr3 147625667 147625891 -79898687 - MER45C DNA AcHobo -725 228 2 432 0 0 0 chr3 147626359 147626407 -79898171 + (CA)n Simple_repeat Simple_repeat 2 49 0 4642 117 48 71 chr3 147626408 147626605 -79897973 - MER49 LTR ERV1 -24 899 699 1757 171 28 0 chr3 147626605 147626891 -79897687 + AluJo SINE Alu 6 299 -13 2309 89 10 0 chr3 147626898 147627189 -79897389 + AluSg SINE Alu 1 294 -16 4642 117 48 71 chr3 147627189 147627903 -79896675 - MER49 LTR ERV1 -230 693 1 423 258 6 17 chr3 147627903 147628080 -79896498 + MER113 DNA MER1_type? 82 256 -265 2507 96 0 0 chr3 147628264 147628576 -79896002 - AluSx SINE Alu 0 312 1 707 250 32 9 chr3 147628637 147628857 -79895721 - MIR SINE MIR -21 241 17 1025 260 68 22 chr3 147629710 147630233 -79894345 - L2 LINE L2 -13 3300 2748 466 288 80 58 chr3 147830374 147830739 -79693839 + L2 LINE L2 2337 2709 -605 6802 174 137 25 chr3 147830932 147832606 -79691972 + L1MA8 LINE L1 2280 4140 -2006 2086 130 10 0 chr3 147832632 147832924 -79691654 + AluSx SINE Alu 1 295 -17 5672 148 40 13 chr3 147832924 147834695 -79689883 + L1MA8 LINE L1 4480 6288 -3 328 191 32 0 chr3 147834711 147834774 -79689804 + MER58 DNA MER1_type 2355 2419 -1 230 208 0 19 chr3 147834817 147834870 -79689708 + L2 LINE L2 3261 3312 -1 464 239 0 173 chr3 147836104 147836330 -79688248 + MER5A DNA MER1_type 1 187 -2 364 192 223 23 chr3 147838433 147838563 -79686015 + MIR SINE MIR 84 239 -23 330 285 57 51 chr3 147838828 147838986 -79685592 + MER5B DNA MER1_type 14 172 -6 984 192 106 83 chr3 147839443 147839527 -79685051 + L1MC5 LINE L1 6973 7054 -907 2057 106 3 7 chr3 147839527 147839833 -79684745 - AluSx SINE Alu 0 305 1 984 192 106 83 chr3 147839833 147840133 -79684445 + L1MC5 LINE L1 7054 7367 -594 756 137 0 0 chr3 147840153 147840270 -79684308 + L1MC3 LINE L1 6498 6614 -1171 909 166 0 7 chr3 147840276 147840427 -79684151 - MLT1A1 LTR MaLR -215 150 1 875 190 95 5 chr3 147840428 147840684 -79683894 + L1MC3 LINE L1 7586 7976 -19 690 227 0 0 chr3 147840686 147840805 -79683773 - FLAM_C SINE Alu -23 120 2 628 211 161 22 chr3 147840838 147841160 -79683418 + L1MC5 LINE L1 7381 7747 -214 250 250 0 0 chr3 147841315 147841363 -79683215 + MER5B DNA MER1_type 130 177 -1 525 130 9 111 chr3 147841686 147841839 -79682739 - AluSg/x SINE Alu 0 331 190 1481 135 5 0 chr3 147841885 147842100 -79682478 - AluSg SINE Alu -94 216 1 193 318 169 30 chr3 147842102 147842505 -79682073 + L2 LINE L2 2298 2756 -558 2316 224 73 12 chr3 147842561 147843070 -79681508 - MLT1F LTR MaLR 0 542 3 338 242 175 8 chr3 147843869 147843989 -79680589 - MLT1H LTR MaLR -387 162 23 2130 124 0 10 chr3 147844114 147844428 -79680150 + AluSx SINE Alu 1 311 -1 212 333 88 53 chr3 147845028 147845142 -79679436 - MIR3 SINE MIR -78 130 13 24 32 0 0 chr3 147845559 147845590 -79678988 + AT_rich Low_complexity Low_complexity 1 31 0 665 220 189 0 chr3 147847046 147847205 -79677373 + MER5A DNA MER1_type 1 189 0 1940 181 31 74 chr3 147847417 147847682 -79676896 + MER31B LTR ERV1 1 237 -229 2198 189 80 2 chr3 147847682 147848106 -79676472 + MSTB2 LTR MaLR 1 457 0 1940 181 31 74 chr3 147848106 147848327 -79676251 + MER31B LTR ERV1 237 466 0 424 234 31 55 chr3 147848400 147848528 -79676050 + MIR SINE MIR 6 130 -132 234 105 0 0 chr3 147848528 147848566 -79676012 + (TC)n Simple_repeat Simple_repeat 1 38 0 532 266 239 76 chr3 147849782 147850192 -79674386 - L2 LINE L2 -8 3305 2829 205 156 0 0 chr3 147850217 147850249 -79674329 + GA-rich Low_complexity Low_complexity 2 33 0 487 266 19 32 chr3 147850256 147850414 -79674164 - MIR SINE MIR -24 238 83 1891 85 75 65 chr3 147851247 147851540 -79673038 - AluSq SINE Alu -17 296 1 283 236 142 61 chr3 147851822 147851970 -79672608 - MIR SINE MIR -50 212 53 238 333 0 12 chr3 147852032 147852116 -79672462 + L2 LINE L2 73 155 -3159 1118 318 107 24 chr3 147852119 147852829 -79671749 + L2 LINE L2 571 1339 -1975 28 29 0 0 chr3 147852829 147852864 -79671714 + AT_rich Low_complexity Low_complexity 1 35 0 4834 179 32 20 chr3 147852864 147854000 -79670578 - L1MA9 LINE L1 -38 6274 5126 552 211 57 19 chr3 147854002 147854211 -79670367 + L1 LINE L1 3132 3348 -2798 2274 171 67 7 chr3 147854211 147854615 -79669963 + MSTA LTR MaLR 1 428 0 6341 164 11 5 chr3 147854615 147855673 -79668905 + MSTA-int LTR MaLR 1 1065 -586 1016 330 42 28 chr3 147855673 147856239 -79668339 + L2 LINE L2 1366 1939 -1375 251 279 15 0 chr3 147856290 147856358 -79668220 + MLT1A1 LTR MaLR 297 365 0 189 195 0 0 chr3 147856404 147856445 -79668133 + (CA)n Simple_repeat Simple_repeat 1 41 0 1218 275 123 28 chr3 147857184 147857908 -79666670 + L1M4 LINE L1 2116 2908 -3238 249 309 0 12 chr3 147858367 147858448 -79666130 - MIR SINE MIR -105 103 24 290 146 73 0 chr3 147858852 147858907 -79665671 - L1MC4 LINE L1 0 8042 7984 736 229 105 53 chr3 147858908 147859231 -79665347 - L1MC4 LINE L1 -141 7901 7562 456 280 60 71 chr3 147859670 147859852 -79664726 + MIR3 SINE MIR 8 187 -21 30 27 0 0 chr3 147860154 147860191 -79664387 + AT_rich Low_complexity Low_complexity 1 37 0 2440 229 49 72 chr3 147860191 147860886 -79663692 - L1ME1 LINE L1 -22 6144 5488 225 0 0 0 chr3 147860886 147860911 -79663667 + (A)n Simple_repeat Simple_repeat 1 25 0 2164 81 0 78 chr3 147860913 147861235 -79663343 + AluSc SINE Alu 1 297 -12 353 273 50 0 chr3 147861237 147861358 -79663220 - MIR SINE MIR -44 218 92 261 321 88 36 chr3 147861371 147861508 -79663070 + MIR3 SINE MIR 27 170 -38 183 0 105 26 chr3 147861511 147861549 -79663029 + T-rich Low_complexity Low_complexity 3 43 0 45413 35 2 2 chr3 147861552 147867710 -79656868 - L1PA3 LINE L1 -3 6152 1 2277 157 13 18 chr3 147868060 147868443 -79656135 + MSTD LTR MaLR 11 391 -5 2145 264 98 31 chr3 147868680 147869786 -79654792 + L2 LINE L2 2140 3313 0 189 308 164 10 chr3 147870691 147870795 -79653783 + L2 LINE L2 3121 3240 -32 230 0 0 32 chr3 147870858 147870889 -79653689 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 1255 194 42 49 chr3 147870892 147871176 -79653402 - AluJo SINE Alu -30 282 1 192 290 235 55 chr3 147871179 147871396 -79653182 - L2 LINE L2 -12 3301 3046 21 0 0 0 chr3 147871419 147871440 -79653138 + AT_rich Low_complexity Low_complexity 1 21 0 2051 261 73 45 chr3 147871499 147872013 -79652565 - MER115 DNA AcHobo 0 693 154 1518 186 42 80 chr3 147872013 147872390 -79652188 - MLT1A1 LTR MaLR -2 363 1 2051 261 73 45 chr3 147872390 147872546 -79652032 - MER115 DNA AcHobo -539 154 4 400 290 150 29 chr3 147872577 147872946 -79651632 - L2 LINE L2 -259 3054 2657 228 243 50 79 chr3 147873617 147873757 -79650821 - L1ME3A LINE L1 -67 6103 5968 329 259 35 43 chr3 147874269 147874385 -79650193 - MIR3 SINE MIR -1 207 93 693 191 196 24 chr3 147874860 147875156 -79649422 + MER31B LTR ERV1 3 466 0 376 314 8 0 chr3 147875213 147875334 -79649244 - MER94 DNA DNA 0 134 13 421 228 207 0 chr3 147876459 147876604 -79647974 + MER5A DNA MER1_type 13 187 -2 316 71 0 0 chr3 147876605 147876647 -79647931 - L1M3 LINE L1 -738 5433 5392 5044 144 28 7 chr3 147876722 147878445 -79646133 - L1PA16 LINE L1 -13 6159 4372 204 125 0 0 chr3 147878629 147878661 -79645917 + (TC)n Simple_repeat Simple_repeat 1 32 0 410 187 0 13 chr3 147879124 147879199 -79645379 - MER116 DNA Mariner 0 80 7 242 186 71 0 chr3 147880178 147880248 -79644330 + L1ME LINE L1 5790 5864 -257 281 236 16 49 chr3 147880282 147880405 -79644173 - L1ME3A LINE L1 -232 5889 5771 811 279 68 41 chr3 147880408 147880866 -79643712 - L1MC4a LINE L1 -149 5972 5512 205 257 0 20 chr3 147880979 147881080 -79643498 + CT-rich Low_complexity Low_complexity 1 99 0 23 33 0 0 chr3 147881671 147881701 -79642877 + AT_rich Low_complexity Low_complexity 1 30 0 458 308 178 40 chr3 147884855 147886375 -79638203 + L2 LINE L2 422 2230 -1084 620 261 54 38 chr3 147887589 147887773 -79636805 + MER5A DNA MER1_type 1 187 -2 386 196 198 25 chr3 147889998 147890154 -79634424 + MIR SINE MIR 58 239 -23 763 161 24 0 chr3 147890207 147890331 -79634247 + FLAM_C SINE Alu 1 127 -16 291 292 42 71 chr3 147890555 147890723 -79633855 + MER5B DNA MER1_type 12 174 -4 1058 220 91 30 chr3 147891191 147891564 -79633014 + L1MC5 LINE L1 6973 7368 -593 4803 161 93 100 chr3 147891583 147892220 -79632358 + L1MC3 LINE L1 6498 7138 -647 254 244 61 12 chr3 147892220 147892302 -79632276 + MLT1F1 LTR MaLR 37 122 -445 4803 161 93 100 chr3 147892302 147892564 -79632014 + L1MC3 LINE L1 7138 7401 -384 1822 213 14 11 chr3 147892564 147892926 -79631652 - MLT1A1 LTR MaLR 0 365 3 4803 161 93 100 chr3 147892926 147893239 -79631339 + L1MC3 LINE L1 7401 7782 -3 327 253 54 48 chr3 147893238 147893424 -79631154 + L1MC5 LINE L1 7390 7576 -385 * 576 213 123 75 chr3 147893425 147893693 -79630885 + L1MC5 LINE L1 7651 7931 -30 235 243 0 0 chr3 147893904 147893952 -79630626 + MER5B DNA MER1_type 136 178 0 314 209 30 0 chr3 147894057 147894124 -79630454 - L1MC/D LINE L1 -2278 5764 5696 2185 137 0 0 chr3 147894532 147894839 -79629739 - AluSx SINE Alu -1 311 5 235 342 56 31 chr3 147895428 147895624 -79628954 + MLT1K LTR MaLR 67 267 -321 492 280 42 0 chr3 147896101 147896244 -79628334 + MIR SINE MIR 111 259 -3 2244 101 3 3 chr3 147896309 147896607 -79627971 + AluY SINE Alu 1 298 -13 205 153 203 34 chr3 147899342 147899401 -79625177 - MIR SINE MIR -69 139 71 355 83 33 0 chr3 147902847 147902907 -79621671 + (TCC)n Simple_repeat Simple_repeat 3 64 0 687 204 0 0 chr3 147902947 147903055 -79621523 - FLAM_C SINE Alu -33 110 3 304 250 14 0 chr3 147903057 147903129 -79621449 - MER5A DNA MER1_type -114 75 3 223 182 0 0 chr3 147904013 147904057 -79620521 + A-rich Low_complexity Low_complexity 1 44 0 3294 77 26 0 chr3 147904707 147905122 -79619456 + L1PA11 LINE L1 5749 6174 0 2121 163 127 55 chr3 147905134 147905173 -79619405 + L1MA9 LINE L1 5724 5759 -553 261 0 0 0 chr3 147905173 147905202 -79619376 + (CA)n Simple_repeat Simple_repeat 2 30 0 2121 163 127 55 chr3 147905202 147905676 -79618902 + L1MA9 LINE L1 5759 6274 -38 21 0 0 0 chr3 147905826 147905847 -79618731 + AT_rich Low_complexity Low_complexity 1 21 0 718 244 57 6 chr3 147906010 147906186 -79618392 + LTR50 LTR ERVL 1 185 -610 216 0 0 0 chr3 147906515 147906539 -79618039 + (CA)n Simple_repeat Simple_repeat 2 25 0 5453 111 12 7 chr3 147907040 147907851 -79616727 + L1PA13 LINE L1 5345 6159 -4 490 327 88 5 chr3 147908311 147908516 -79616062 - MIR SINE MIR -24 238 17 378 267 14 68 chr3 147909088 147909234 -79615344 - MIR SINE MIR -72 190 53 2184 83 17 0 chr3 147909249 147909538 -79615040 + L1MA4A LINE L1 5996 6289 -14 1403 176 4 20 chr3 147910651 147910906 -79613672 - AluJo SINE Alu 0 312 62 2317 149 0 37 chr3 147911540 147911890 -79612688 + MER1B DNA MER1_type 1 337 0 211 344 62 0 chr3 147913301 147913397 -79611181 + L2 LINE L2 3151 3252 -20 4580 173 30 89 chr3 147913526 147914621 -79609957 + L1MC1 LINE L1 18 1047 -5379 271 67 0 0 chr3 147914629 147914674 -79609904 + L1MC1 LINE L1 1015 1059 -5367 17081 202 43 32 chr3 147914685 147921176 -79603402 + L1PA15 LINE L1 1 6682 -134 1717 157 59 3 chr3 147921176 147921462 -79603116 + AluSx SINE Alu 1 302 -10 17081 202 43 32 chr3 147921462 147921593 -79602985 + L1PA15 LINE L1 6682 6810 -6 2506 135 66 28 chr3 147921588 147921940 -79602638 + L1MC1 LINE L1 1053 1431 -4995 * 318 50 0 0 chr3 147921940 147921980 -79602598 + (CCA)n Simple_repeat Simple_repeat 2 41 0 2506 135 66 28 chr3 147921980 147922124 -79602454 + L1MC1 LINE L1 1431 1568 -4858 788 11 0 0 chr3 147922115 147922205 -79602373 - L1PA3 LINE L1 -1808 4338 4249 * 8927 25 0 1 chr3 147922204 147924020 -79600558 + L1PA3 LINE L1 4354 6167 0 2825 123 103 69 chr3 147924021 147924528 -79600050 + L1MC1 LINE L1 1555 2184 -4242 1703 174 7 3 chr3 147924528 147924816 -79599762 + AluJb SINE Alu 1 289 -23 2825 123 103 69 chr3 147924816 147924987 -79599591 + L1MC1 LINE L1 2184 2348 -4078 1329 140 61 31 chr3 147925202 147925430 -79599148 + MER46A DNA MER2_type 1 235 -1 8791 220 32 35 chr3 147925478 147927985 -79596593 + L1MC1 LINE L1 2364 4862 -1751 1195 143 0 0 chr3 147927985 147928153 -79596425 + FRAM SINE Alu 1 164 -12 8791 220 32 35 chr3 147928153 147929873 -79594705 + L1MC1 LINE L1 4862 6585 -28 2216 165 10 47 chr3 147931251 147931656 -79592922 + MLT1B LTR MaLR 1 390 0 2392 93 3 0 chr3 147931917 147932229 -79592349 + AluSp SINE Alu 1 313 0 2152 107 0 0 chr3 147933095 147933403 -79591175 + AluSx SINE Alu 1 308 0 421 245 49 70 chr3 147934646 147934789 -79589789 - MIR SINE MIR -104 158 19 720 273 65 40 chr3 147935096 147935496 -79589082 + LTR16A LTR ERVL 37 446 -4 1919 155 63 27 chr3 147935645 147936168 -79588410 - MLT2A2 LTR ERVL -8 546 1 297 0 0 0 chr3 147937119 147937152 -79587426 + (CA)n Simple_repeat Simple_repeat 2 34 0 210 323 0 0 chr3 147937277 147937342 -79587236 + MIR SINE MIR 87 151 -57 433 323 68 5 chr3 147937537 147937729 -79586849 + MIR SINE MIR 53 256 -6 207 162 0 0 chr3 147938853 147938890 -79585688 + (TAGA)n Simple_repeat Simple_repeat 4 40 0 1243 241 127 29 chr3 147938890 147939309 -79585269 + L1MC4a LINE L1 5457 5916 -1892 1401 253 117 44 chr3 147939583 147940362 -79584216 + L1MEc LINE L1 418 1253 -5143 871 211 27 31 chr3 147940974 147941242 -79583336 + L1ME1 LINE L1 5908 6177 -1 1784 128 84 0 chr3 147941305 147941579 -79582999 - AluSp SINE Alu -15 298 2 38 22 0 0 chr3 147941622 147941667 -79582911 + AT_rich Low_complexity Low_complexity 1 45 0 439 241 234 0 chr3 147941700 147941841 -79582737 - MER5A DNA MER1_type -7 182 9 228 35 0 0 chr3 147942097 147942126 -79582452 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 293 208 13 0 chr3 147942199 147942276 -79582302 + (TCCA)n Simple_repeat Simple_repeat 4 81 0 1015 266 8 0 chr3 147942731 147942975 -79581603 - MIR SINE MIR -10 252 7 488 230 9 0 chr3 147943224 147943337 -79581241 - L2 LINE L2 -910 2404 2291 391 241 59 32 chr3 147943349 147943536 -79581042 + L1MC5 LINE L1 7719 7910 -51 1847 212 14 64 chr3 147943561 147944137 -79580441 + L1MC4 LINE L1 7437 7983 -59 1044 243 46 13 chr3 147944145 147944450 -79580128 + LTR16A LTR ERVL 128 442 -8 420 326 45 8 chr3 147944468 147944600 -79579978 - MIR3 SINE MIR -65 143 7 21 36 0 0 chr3 147945250 147945278 -79579300 + AT_rich Low_complexity Low_complexity 1 28 0 6967 16 0 17 chr3 147945573 147945717 -79578861 + L1PA3 LINE L1 5348 5493 -662 2830 35 0 0 chr3 147945717 147946035 -79578543 + AluYb8 SINE Alu 1 318 0 6967 16 0 17 chr3 147946035 147946712 -79577866 + L1PA3 LINE L1 5493 6155 0 250 174 22 0 chr3 147946968 147947014 -79577564 + MSTB2 LTR MaLR 411 457 0 2381 116 0 0 chr3 147947894 147948205 -79576373 + AluSx SINE Alu 1 311 -1 367 263 158 24 chr3 147948439 147948549 -79576029 - Charlie7 DNA MER1_type -2367 245 151 2296 74 6 35 chr3 147948549 147948861 -79575717 - AluSp SINE Alu -10 303 1 2252 98 0 0 chr3 147948861 147949157 -79575421 - AluSq SINE Alu -17 296 1 367 263 158 24 chr3 147949157 147949254 -79575324 - Charlie7 DNA MER1_type -2460 152 9 616 226 168 0 chr3 147950203 147950358 -79574220 - MER5A DNA MER1_type 0 189 9 632 233 126 31 chr3 147950375 147950598 -79573980 - MER45C DNA AcHobo -3 950 707 666 230 172 6 chr3 147950710 147950884 -79573694 - MER45C DNA AcHobo -743 210 8 30822 98 12 64 chr3 147950986 147957083 -79567495 + L1PA5 LINE L1 12 5782 -372 1997 49 0 0 chr3 147957111 147957376 -79567202 + L1P LINE L1 4662 4926 -1220 1846 74 4 19 chr3 147957376 147957628 -79566950 + L1PA5 LINE L1 5896 6148 -6 2847 80 0 0 chr3 147957628 147957994 -79566584 + L1PA7 LINE L1 5770 6142 -12 803 189 0 0 chr3 147958076 147958235 -79566343 + L1M4 LINE L1 4082 4240 -1906 711 203 8 0 chr3 147958311 147958429 -79566149 - FLAM_A SINE Alu -14 119 1 748 249 64 16 chr3 147958429 147958793 -79565785 - L1M4 LINE L1 -2692 3454 3070 247 327 185 19 chr3 147958994 147959156 -79565422 + MIR3 SINE MIR 17 205 -3 1149 211 14 5 chr3 147960011 147960229 -79564349 - MER58A DNA MER1_type -4 220 1 637 242 39 22 chr3 147960234 147960416 -79564162 - MIR3 SINE MIR -1 207 23 1036 275 92 2 chr3 147960781 147961184 -79563394 + LTR16A LTR ERVL 6 444 -6 218 275 203 36 chr3 147961545 147961683 -79562895 + MIR SINE MIR 47 207 -55 21 0 0 0 chr3 147961887 147961908 -79562670 + AT_rich Low_complexity Low_complexity 1 21 0 4080 87 40 18 chr3 147962350 147962971 -79561607 - L1PB1 LINE L1 -3 6148 5514 292 289 137 70 chr3 147963198 147963374 -79561204 + LTR67 LTR ERVL 2 204 -353 1851 162 0 36 chr3 147963374 147963676 -79560902 + AluJb SINE Alu 1 291 -21 292 289 137 70 chr3 147963676 147963769 -79560809 + LTR67 LTR ERVL 204 289 -268 1194 183 117 17 chr3 147963815 147964105 -79560473 + MLT1F LTR MaLR 224 542 0 1742 175 3 0 chr3 147964314 147964629 -79559949 - L1MA6 LINE L1 -6 6294 5979 696 221 154 0 chr3 147964633 147964828 -79559750 - MER57A LTR ERV1 -27 376 152 212 306 71 31 chr3 147964876 147964974 -79559604 + L2 LINE L2 3208 3309 -4 225 383 92 23 chr3 147965009 147965226 -79559352 - L2 LINE L2 -338 2976 2745 2152 128 0 0 chr3 147965531 147965932 -79558646 - AluSq SINE Alu 0 401 1 231 326 70 23 chr3 147967008 147967094 -79557484 + L2 LINE L2 3137 3226 -46 518 204 310 0 chr3 147967865 147968007 -79556571 + MER5A DNA MER1_type 4 189 0 2079 221 77 81 chr3 147969419 147970380 -79554198 - HAL1 LINE L1 -110 2397 1441 1045 271 109 85 chr3 147970381 147971623 -79552955 - HAL1 LINE L1 -1215 1292 21 21 0 0 0 chr3 147971843 147971864 -79552714 + AT_rich Low_complexity Low_complexity 1 21 0 1238 248 35 6 chr3 147971864 147972203 -79552375 + L1PA15-16 LINE L1 48 396 -6453 537 160 10 0 chr3 147972205 147972305 -79552273 + L1MA2 LINE L1 6200 6300 -4 6087 156 18 13 chr3 147972309 147974562 -79550016 + L1PB1 LINE L1 3883 6151 0 4695 140 42 22 chr3 147974575 147974830 -79549748 + L1PB4 LINE L1 5042 5290 -866 245 51 26 0 chr3 147974830 147974869 -79549709 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 4695 140 42 22 chr3 147974869 147975341 -79549237 + L1PB4 LINE L1 5290 5802 -354 243 0 0 0 chr3 147975341 147975368 -79549210 + (CA)n Simple_repeat Simple_repeat 2 28 0 4695 140 42 22 chr3 147975368 147975724 -79548854 + L1PB4 LINE L1 5802 6149 -7 1517 211 3 10 chr3 147975741 147976030 -79548548 - AluJo SINE Alu -25 287 1 353 336 19 0 chr3 147976038 147976142 -79548436 - L2 LINE L2 -9 3263 3158 21 0 0 0 chr3 147976522 147976543 -79548035 + AT_rich Low_complexity Low_complexity 1 21 0 295 326 0 0 chr3 147977023 147977112 -79547466 + MIR3 SINE MIR 92 180 -28 323 273 30 8 chr3 147977449 147977581 -79546997 + L1ME4a LINE L1 5978 6112 -9 1089 116 0 0 chr3 147977952 147978099 -79546479 + AluSq/x SINE Alu 1 147 -166 23 0 0 0 chr3 147979010 147979033 -79545545 + AT_rich Low_complexity Low_complexity 1 23 0 699 257 40 24 chr3 147979202 147979451 -79545127 - L1ME4a LINE L1 -266 5855 5603 21 0 0 0 chr3 147979939 147979960 -79544618 + AT_rich Low_complexity Low_complexity 1 21 0 237 33 0 0 chr3 147980118 147980148 -79544430 + (CAA)n Simple_repeat Simple_repeat 2 31 0 288 0 0 0 chr3 147980823 147980855 -79543723 + (TGAA)n Simple_repeat Simple_repeat 1 32 0 585 215 11 0 chr3 147981749 147981892 -79542686 - L1ME2 LINE L1 -9 6155 6030 304 280 97 80 chr3 147981915 147982226 -79542352 + L2 LINE L2 2893 3208 -105 1083 264 147 32 chr3 147982228 147982637 -79541941 - L2 LINE L2 0 3313 2858 654 302 46 87 chr3 147982718 147983214 -79541364 - L2 LINE L2 -667 2647 2172 290 241 17 0 chr3 147983203 147983261 -79541317 + L2 LINE L2 3205 3263 -50 * 1684 158 28 11 chr3 147983328 147983612 -79540966 - AluJo SINE Alu -23 289 1 205 200 0 0 chr3 147984604 147984644 -79539934 + T-rich Low_complexity Low_complexity 4 43 0 382 303 67 0 chr3 147984842 147985007 -79539571 + MIR SINE MIR 51 226 -36 410 230 0 0 chr3 147986703 147986790 -79537788 + MIR SINE MIR 61 147 -115 522 290 54 40 chr3 147987279 147987555 -79537023 + LTR16B LTR ERVL 34 313 -151 208 121 0 0 chr3 147987555 147987588 -79536990 + (CCTG)n Simple_repeat Simple_repeat 3 35 0 558 0 0 0 chr3 147987632 147987694 -79536884 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 306 267 52 0 chr3 147990007 147990142 -79534436 - MIR3 SINE MIR -45 163 22 203 260 0 0 chr3 147990218 147990268 -79534310 + L2 LINE L2 2919 2968 -304 285 244 13 13 chr3 147990821 147990899 -79533679 - AluJ/FLAM SINE Alu -224 78 1 194 247 39 26 chr3 147991271 147991348 -79533230 - L2 LINE L2 -339 2974 2897 2469 75 0 7 chr3 147992472 147992777 -79531801 - AluY SINE Alu -8 303 1 231 316 71 25 chr3 147993276 147993472 -79531106 - L2 LINE L2 -556 2758 2554 992 181 18 0 chr3 147993484 147993655 -79530923 + AluJo SINE Alu 122 295 -17 319 268 115 32 chr3 147995516 147995673 -79528905 + MER5A DNA MER1_type 20 189 0 217 170 43 0 chr3 147995886 147995933 -79528645 + MIR SINE MIR 102 150 -112 2264 81 13 45 chr3 147995959 147996101 -79528477 + AluSp SINE Alu 1 146 -167 2604 56 0 7 chr3 147996101 147996407 -79528171 + AluY SINE Alu 1 304 -7 2264 81 13 45 chr3 147996407 147996574 -79528004 + AluSp SINE Alu 146 300 -13 629 128 18 28 chr3 147996602 147996711 -79527867 + AluJo/FLAM SINE Alu 24 131 -181 2086 125 10 3 chr3 147996714 147997010 -79527568 + AluSq SINE Alu 1 298 -15 359 100 100 0 chr3 147997024 147997084 -79527494 + L1MB1 LINE L1 6111 6176 -13 1758 117 0 12 chr3 147997087 147997222 -79527356 + AluSp SINE Alu 1 133 -180 2364 108 0 0 chr3 147997222 147997529 -79527049 + AluSx SINE Alu 1 307 -5 1758 117 0 12 chr3 147997529 147997640 -79526938 + AluSp SINE Alu 133 244 -69 194 339 33 33 chr3 147997786 147997907 -79526671 + MIR SINE MIR 11 131 -131 560 107 0 0 chr3 147997912 147997996 -79526582 + Alu SINE Alu 222 305 -5 2202 114 42 36 chr3 147998059 147998419 -79526159 - THE1B LTR MaLR 0 364 3 703 295 43 8 chr3 147998668 147998902 -79525676 - MIR SINE MIR 0 262 21 236 339 36 0 chr3 148001622 148001734 -79522844 + MIR SINE MIR 12 127 -135 46 19 0 0 chr3 148002210 148002263 -79522315 + AT_rich Low_complexity Low_complexity 1 53 0 283 83 0 0 chr3 148002273 148002309 -79522269 + L1P5 LINE L1 5663 5698 -456 217 240 0 20 chr3 148002309 148002359 -79522219 + (CATA)n Simple_repeat Simple_repeat 2 50 0 3474 91 8 4 chr3 148002361 148002844 -79521734 - L1PB3 LINE L1 -7 6147 5663 231 345 0 30 chr3 148003035 148003200 -79521378 + CT-rich Low_complexity Low_complexity 2 161 0 544 165 161 124 chr3 148003223 148003465 -79521113 + MER112 DNA MER1_type 4 254 -2 256 32 0 0 chr3 148003465 148003496 -79521082 + L1PA13 LINE L1 2228 2258 -4529 439 269 81 7 chr3 148003537 148003686 -79520892 + MIR SINE MIR 48 207 -55 6960 123 66 22 chr3 148003750 148004662 -79519916 - Tigger3b DNA MER2_type -1798 1230 253 1897 153 0 3 chr3 148004662 148004956 -79519622 + AluSx SINE Alu 1 293 -19 6960 123 66 22 chr3 148004956 148005221 -79519357 - Tigger3b DNA MER2_type -2775 253 1 28 29 0 0 chr3 148005250 148005285 -79519293 + AT_rich Low_complexity Low_complexity 1 35 0 1088 176 33 11 chr3 148005471 148005653 -79518925 - MER58A DNA MER1_type -2 222 37 892 184 17 0 chr3 148006315 148006494 -79518084 - MER5A DNA MER1_type -7 182 1 293 291 8 51 chr3 148006850 148006967 -79517611 - MIR SINE MIR -72 190 79 759 158 139 0 chr3 148007227 148007385 -79517193 - MER5A DNA MER1_type -9 180 1 941 189 16 32 chr3 148007697 148007887 -79516691 + MER5A DNA MER1_type 2 188 -1 284 321 119 0 chr3 148007950 148008059 -79516519 + L2 LINE L2 3151 3272 0 31 26 0 0 chr3 148008828 148008866 -79515712 + AT_rich Low_complexity Low_complexity 1 38 0 212 0 36 0 chr3 148009052 148009080 -79515498 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 382 320 39 0 chr3 148009168 148009296 -79515282 + MIR SINE MIR 12 144 -118 909 162 90 68 chr3 148009399 148009621 -79514957 - MLT1B LTR MaLR 0 390 164 5313 51 1 22 chr3 148009622 148010293 -79514285 - L1PA7 LINE L1 -1 6153 5497 1412 52 0 0 chr3 148010293 148010466 -79514112 + L1PA7 LINE L1 5309 5481 -691 1101 156 6 6 chr3 148010466 148010646 -79513932 - MLT1B LTR MaLR -210 180 1 723 259 107 72 chr3 148010646 148011009 -79513569 + LTR16A1 LTR ERVL 81 456 -1 685 182 0 0 chr3 148011598 148011708 -79512870 + Tigger3(Golem) DNA MER2_type 2919 3028 -1 839 137 191 0 chr3 148013107 148013275 -79511303 - MER3 DNA MER1_type -9 200 1 2281 27 0 0 chr3 148013761 148014023 -79510555 - L1PA5 LINE L1 -6 6148 5887 378 61 0 0 chr3 148014466 148014515 -79510063 + (CA)n Simple_repeat Simple_repeat 2 50 0 221 308 22 22 chr3 148014833 148014924 -79509654 + MIR SINE MIR 76 166 -96 1831 156 14 65 chr3 148015011 148015382 -79509196 - MLT1A1 LTR MaLR 0 365 14 448 237 173 0 chr3 148015398 148015537 -79509041 - MER5A DNA MER1_type -18 171 9 216 0 0 0 chr3 148015985 148016009 -79508569 + (TG)n Simple_repeat Simple_repeat 1 24 0 2116 120 19 80 chr3 148016029 148016404 -79508174 - MLT2D LTR ERVL -62 352 1 648 94 12 0 chr3 148016594 148016679 -79507899 + L1PA6 LINE L1 13 98 -6048 * 36397 62 8 14 chr3 148016677 148021608 -79502970 + L1PA6 LINE L1 623 5520 -634 2279 89 14 0 chr3 148021608 148021899 -79502679 - AluY SINE Alu -16 295 1 36397 62 8 14 chr3 148021899 148022529 -79502049 + L1PA6 LINE L1 5520 6152 -2 272 250 0 16 chr3 148023365 148023429 -79501149 - LTR16A1 LTR ERVL 0 457 395 4026 167 113 50 chr3 148024528 148025384 -79499194 - MER21A LTR ERV1 -9 922 13 180 0 0 0 chr3 148025384 148025404 -79499174 + (TA)n Simple_repeat Simple_repeat 2 21 0 315 273 11 0 chr3 148025404 148025492 -79499086 - L1MC4 LINE L1 -1339 6703 6615 7537 43 0 3 chr3 148025599 148026660 -79497918 - L1PA4 LINE L1 -1 6154 5095 2107 177 62 2 chr3 148026662 148027063 -79497515 - L1P LINE L1 -5711 435 11 1950 109 15 4 chr3 148027073 148027362 -79497216 + AluSg SINE Alu 13 304 0 261 326 70 16 chr3 148027367 148027554 -79497024 + L1MEd LINE L1 511 707 -5412 218 297 31 0 chr3 148027679 148027743 -79496835 + L2 LINE L2 2970 3035 -278 249 128 0 0 chr3 148027962 148028009 -79496569 + (TA)n Simple_repeat Simple_repeat 2 48 0 701 275 112 0 chr3 148028048 148028281 -79496297 - L1ME3A LINE L1 -242 6322 6064 1536 143 38 5 chr3 148028281 148028680 -79495898 - LOR1a LTR ERV1 0 497 1 846 235 46 35 chr3 148028681 148028941 -79495637 - L1ME3A LINE L1 -498 6066 5804 441 279 117 5 chr3 148028950 148029287 -79495291 - L1MDa LINE L1 -4785 1755 1512 255 268 174 30 chr3 148029668 148029933 -79494645 - L1MC/D LINE L1 -2210 5598 5296 13556 46 4 1 chr3 148030084 148031680 -79492898 + HERV17 LTR ERV1 4418 6019 -2607 324 26 0 0 chr3 148031673 148031712 -79492866 + HERV17 LTR ERV1 7510 7548 -1078 * 2493 45 0 0 chr3 148031702 148031994 -79492584 + HERV17 LTR ERV1 8335 8626 0 2618 57 0 30 chr3 148031996 148032330 -79492248 + LTR17 LTR ERV1 3 326 -454 246 62 0 0 chr3 148032330 148032362 -79492216 + (GAAAA)n Simple_repeat Simple_repeat 3 34 0 2098 121 34 0 chr3 148032368 148032665 -79491913 + AluSg SINE Alu 1 307 -3 22 0 0 0 chr3 148032799 148032821 -79491757 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr3 148033126 148033155 -79491423 + AT_rich Low_complexity Low_complexity 1 29 0 347 357 16 0 chr3 148033221 148033347 -79491231 - L2 LINE L2 0 3313 3186 297 0 0 0 chr3 148033369 148033402 -79491176 + (TA)n Simple_repeat Simple_repeat 2 34 0 303 255 149 0 chr3 148033501 148033595 -79490983 + MER91C DNA MER1_type 33 140 0 270 290 148 44 chr3 148033624 148033807 -79490771 - L2 LINE L2 -199 3073 2872 296 218 18 0 chr3 148033839 148033894 -79490684 + MER81 DNA DNA 59 114 0 459 304 87 31 chr3 148033898 148034187 -79490391 - L2 LINE L2 -448 2866 2562 250 395 52 8 chr3 148034236 148034370 -79490208 - MIR SINE MIR -119 143 4 36 0 0 0 chr3 148034566 148034602 -79489976 + AT_rich Low_complexity Low_complexity 1 36 0 1947 203 85 8 chr3 148035777 148036261 -79488317 + Charlie1b DNA MER1_type 2 522 -1 4861 164 36 3 chr3 148036310 148037470 -79487108 - L1MB3 LINE L1 -87 6096 4891 1961 195 54 48 chr3 148037518 148038020 -79486558 + MLT1D LTR MaLR 1 505 0 1095 206 59 40 chr3 148038034 148038408 -79486170 - HAL1b LINE L1 -241 1107 727 1946 168 27 40 chr3 148038483 148038857 -79485721 - MSTB LTR MaLR -1 425 57 631 235 7 7 chr3 148038857 148039010 -79485568 + L2 LINE L2 3161 3313 0 220 267 0 33 chr3 148039069 148039129 -79485449 + L2 LINE L2 3205 3262 -10 676 268 123 9 chr3 148039296 148039524 -79485054 - MIR SINE MIR 0 262 9 1240 154 0 1 chr3 148039575 148039895 -79484683 + MLT1A1 LTR MaLR 6 365 0 1680 180 74 61 chr3 148039900 148040361 -79484217 - MLT1C LTR MaLR 0 467 1 296 295 162 0 chr3 148040393 148040498 -79484080 + L2 LINE L2 3149 3270 -2 603 76 0 0 chr3 148040801 148040880 -79483698 + MADE1 DNA Mariner 2 80 0 272 350 0 12 chr3 148041790 148041870 -79482708 + MER5B DNA MER1_type 2 80 -98 1039 182 35 0 chr3 148041871 148042069 -79482509 + MER3 DNA MER1_type 1 205 -4 550 310 69 5 chr3 148043125 148043328 -79481250 - MIR SINE MIR -15 247 32 871 266 16 59 chr3 148043679 148043984 -79480594 + LTR16B LTR ERVL 173 464 0 413 328 17 0 chr3 148044666 148044785 -79479793 - L2 LINE L2 -2 3270 3150 517 247 175 0 chr3 148044787 148044941 -79479637 - MER5A DNA MER1_type 0 189 9 5163 77 10 0 chr3 148045223 148045903 -79478675 + L1PA10 LINE L1 5467 6153 -15 189 107 0 0 chr3 148047026 148047054 -79477524 + (T)n Simple_repeat Simple_repeat 1 28 0 1751 195 39 72 chr3 148047352 148047423 -79477155 - MLT1D LTR MaLR 0 505 433 2535 71 0 0 chr3 148047423 148047731 -79476847 - AluY SINE Alu -3 308 1 1751 195 39 72 chr3 148047731 148048142 -79476436 - MLT1D LTR MaLR -72 433 39 587 228 34 7 chr3 148048374 148048523 -79476055 + MER104 DNA Tc2 25 177 -3 410 282 133 29 chr3 148048895 148049293 -79475285 + MLT1I LTR MaLR 1 450 0 719 221 29 0 chr3 148049312 148049484 -79475094 - MER104 DNA MER2_type -3 177 1 1216 195 41 108 chr3 148049855 148050244 -79474334 - MLT1A1 LTR MaLR -2 363 1 5885 121 143 16 chr3 148050261 148051353 -79473225 + Tigger3b DNA MER2_type 1 1231 0 224 256 119 88 chr3 148051813 148051973 -79472605 - MIR SINE MIR -58 204 40 26 0 0 0 chr3 148053391 148053417 -79471161 + AT_rich Low_complexity Low_complexity 1 26 0 1898 233 39 31 chr3 148053420 148053961 -79470617 - L1ME1 LINE L1 -4 6162 5618 440 113 0 0 chr3 148055026 148055088 -79469490 + L1P4 LINE L1 5694 5755 -413 190 242 178 4 chr3 148055650 148055729 -79468849 + MIR SINE MIR 76 143 -65 4112 136 3 2 chr3 148055887 148056521 -79468057 - MER41B LTR ERV1 0 635 1 585 287 156 30 chr3 148056904 148057308 -79467270 + LTR16B LTR ERVL 8 462 -2 380 242 20 20 chr3 148057331 148057430 -79467148 - L2 LINE L2 0 3313 3215 549 264 28 14 chr3 148057475 148057619 -79466959 - MIR SINE MIR -15 247 102 198 214 24 0 chr3 148058609 148058651 -79465927 + MIR SINE MIR 86 128 -80 351 291 0 0 chr3 148058786 148058872 -79465706 + MIR3 SINE MIR 120 205 -3 2830 13 0 0 chr3 148060540 148060851 -79463727 + AluYa5 SINE Alu 1 311 0 271 293 242 0 chr3 148060855 148060954 -79463624 + MER5A DNA MER1_type 61 183 -6 187 292 46 15 chr3 148062051 148062116 -79462462 + MER5A DNA MER1_type 25 91 -98 21 36 0 0 chr3 148063634 148063662 -79460916 + AT_rich Low_complexity Low_complexity 1 28 0 269 320 136 0 chr3 148064026 148064129 -79460449 + L2 LINE L2 3155 3271 -1 746 266 50 0 chr3 148064814 148065013 -79459565 - MER63A DNA MER1_type -1 209 1 367 141 59 0 chr3 148065386 148065471 -79459107 - L1MA7 LINE L1 -7 6284 6195 3860 138 14 6 chr3 148065471 148066108 -79458470 - L1MA8 LINE L1 -154 6137 5493 664 249 209 5 chr3 148067117 148067318 -79457260 + MIR SINE MIR 14 255 -7 12495 188 43 19 chr3 148067328 148067341 -79457237 - L1PA13 LINE L1 -3628 3169 3158 4903 92 27 0 chr3 148067341 148068019 -79456559 - L1PA13 LINE L1 0 6163 5464 1549 78 147 0 chr3 148068019 148068237 -79456341 - AluSc SINE Alu -5 304 55 4903 92 27 0 chr3 148068237 148068253 -79456325 - L1PA13 LINE L1 -699 5464 5450 12495 188 43 19 chr3 148068253 148069416 -79455162 - L1PA13 LINE L1 -3639 3158 2024 2084 136 3 0 chr3 148069416 148069711 -79454867 - AluSx SINE Alu -16 296 1 12495 188 43 19 chr3 148069711 148071614 -79452964 - L1PA13 LINE L1 -4773 2024 3 1277 169 100 41 chr3 148071818 148072208 -79452370 + MER96B DNA MER1_type 1 413 -4 597 240 169 6 chr3 148072401 148072584 -79451994 - MIR SINE MIR -46 216 4 324 119 321 24 chr3 148072659 148072743 -79451835 + L1PA13 LINE L1 1 109 -6678 1294 188 109 34 chr3 148074495 148074879 -79449699 + MER96B DNA MER1_type 1 413 -4 347 303 121 70 chr3 148075165 148075495 -79449083 + L2 LINE L2 2928 3274 -39 1974 96 0 11 chr3 148076091 148076352 -79448226 - AluSc SINE Alu -12 297 40 21 57 0 0 chr3 148077185 148077220 -79447358 + AT_rich Low_complexity Low_complexity 1 35 0 477 257 60 60 chr3 148077826 148078044 -79446534 - MIR SINE MIR 0 262 45 424 274 37 11 chr3 148078230 148078420 -79446158 + L1MEc LINE L1 1598 1792 -4604 239 223 146 0 chr3 148078535 148078638 -79445940 + L1MEc LINE L1 2272 2389 -4007 261 161 54 18 chr3 148078736 148078792 -79445786 + MER4-int LTR ERV1 1102 1159 -5439 1340 251 114 37 chr3 148078796 148079635 -79444943 + L1MEc LINE L1 2643 3546 -2669 2738 133 63 23 chr3 148079662 148080340 -79444238 + L1PA15 LINE L1 5595 6293 -7 723 111 71 8 chr3 148080356 148080431 -79444147 + L1PA15 LINE L1 6024 6112 -53 189 0 0 0 chr3 148080431 148080452 -79444126 + (TA)n Simple_repeat Simple_repeat 2 22 0 723 111 71 8 chr3 148080452 148080502 -79444076 + L1PA15 LINE L1 6112 6157 -8 1668 269 68 49 chr3 148080704 148081502 -79443076 + L1MEc LINE L1 3565 4377 -1838 1692 213 70 82 chr3 148081550 148082492 -79442086 + L1MEc LINE L1 4659 5564 -667 353 317 10 10 chr3 148082691 148082795 -79441783 - MIR3 SINE MIR -12 196 93 213 154 0 0 chr3 148083206 148083245 -79441333 + (TAA)n Simple_repeat Simple_repeat 2 40 0 967 218 63 28 chr3 148083248 148083500 -79441078 - MIR SINE MIR 0 262 2 1716 181 7 10 chr3 148083892 148084196 -79440382 + AluJo SINE Alu 1 303 -9 292 220 0 17 chr3 148084561 148084620 -79439958 - MER5A DNA MER1_type 0 189 132 283 294 15 0 chr3 148085528 148085596 -79438982 - MER5A DNA MER1_type 0 189 121 39 0 0 0 chr3 148085699 148085738 -79438840 + AT_rich Low_complexity Low_complexity 1 39 0 617 175 56 0 chr3 148086016 148086142 -79438436 + MER3 DNA MER1_type 1 133 -76 268 286 139 84 chr3 148086967 148087254 -79437324 + MLT1I LTR MaLR 107 409 0 184 343 41 34 chr3 148087254 148087400 -79437178 + L2 LINE L2 2722 2868 -446 707 238 116 0 chr3 148088091 148088255 -79436323 + MER63A DNA MER1_type 28 210 0 1991 219 81 55 chr3 148088613 148089193 -79435385 - MLT1G1 LTR MaLR 0 595 1 9729 138 37 5 chr3 148089626 148091136 -79433442 - L1M1 LINE L1 -4902 2663 1105 358 105 26 217 chr3 148091132 148091197 -79433381 - L1M1 LINE L1 -7430 135 114 * 947 98 0 0 chr3 148091197 148091330 -79433248 + L1MA2 LINE L1 6172 6304 0 358 105 26 217 chr3 148091330 148091416 -79433162 - L1M1 LINE L1 -7451 114 13 25 0 0 0 chr3 148093512 148093537 -79431041 + AT_rich Low_complexity Low_complexity 1 25 0 2240 97 3 0 chr3 148094500 148094789 -79429789 + AluY SINE Alu 3 292 -19 180 0 0 0 chr3 148095864 148095884 -79428694 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 313 243 71 21 chr3 148096950 148097090 -79427488 + L1MC1 LINE L1 841 987 -5944 * 9351 193 35 13 chr3 148097089 148098097 -79426481 + L1MC1 LINE L1 3523 4507 -2621 1988 129 3 0 chr3 148098097 148098384 -79426194 + AluSx SINE Alu 1 288 -24 9351 193 35 13 chr3 148098384 148099845 -79424733 + L1MC1 LINE L1 4507 6093 -1035 2246 82 13 16 chr3 148099845 148100148 -79424430 + AluY SINE Alu 1 302 -9 9351 193 35 13 chr3 148100148 148101207 -79423371 + L1MC1 LINE L1 6093 7127 -1 253 272 49 43 chr3 148101473 148101635 -79422943 + L1MEc LINE L1 1293 1455 -4968 27 49 0 0 chr3 148101688 148101729 -79422849 + AT_rich Low_complexity Low_complexity 1 41 0 283 343 0 0 chr3 148101761 148101927 -79422651 + L1M3de LINE L1 1791 1956 -4697 2308 112 3 0 chr3 148101936 148102248 -79422330 + AluSq SINE Alu 1 313 0 312 300 9 27 chr3 148102248 148102348 -79422230 + L1MEc LINE L1 1863 1962 -4969 392 256 62 19 chr3 148102351 148102511 -79422067 + L1MEc LINE L1 1902 2068 -4863 368 288 100 118 chr3 148102513 148102944 -79421634 + L1MEc LINE L1 2124 2589 -713 204 361 10 21 chr3 148103227 148103324 -79421254 + L2 LINE L2 2737 2832 -482 186 279 0 0 chr3 148103379 148103422 -79421156 + L2 LINE L2 3219 3261 -11 300 346 39 31 chr3 148103474 148103604 -79420974 - L2 LINE L2 0 3272 3142 24 85 0 0 chr3 148103774 148103833 -79420745 + AT_rich Low_complexity Low_complexity 1 59 0 337 260 132 9 chr3 148104245 148104351 -79420227 - MIR SINE MIR -73 135 37 286 171 257 48 chr3 148104571 148104676 -79419902 + MLT1L LTR MaLR 1 127 -488 484 175 7 9 chr3 148104721 148104842 -79419736 - LTR37B LTR ERV1 -175 293 144 963 267 59 56 chr3 148104966 148105356 -79419222 + MLT1L LTR MaLR 217 607 -8 2261 112 0 0 chr3 148105736 148106031 -79418547 + AluSg SINE Alu 1 295 -15 40096 70 5 4 chr3 148107079 148113298 -79411280 + L1PA5 LINE L1 3 6228 0 2079 158 120 29 chr3 148113787 148114235 -79410343 - MLT2B1 LTR ERVL 0 554 1 714 267 110 14 chr3 148114551 148114832 -79409746 + MLT1I LTR MaLR 80 387 -22 2161 117 3 3 chr3 148115271 148115570 -79409008 - AluSg SINE Alu -11 299 1 376 345 12 12 chr3 148115668 148115839 -79408739 + LTR16C LTR ERVL 321 491 0 227 346 78 62 chr3 148115917 148116226 -79408352 + L2 LINE L2 2358 2671 -643 259 323 133 38 chr3 148116416 148116574 -79408004 + L2 LINE L2 2918 3090 -182 1968 235 70 40 chr3 148116616 148117284 -79407294 - L1ME3 LINE L1 -1 6161 5474 279 219 18 140 chr3 148117416 148117447 -79407131 - MIR SINE MIR -98 164 131 573 100 0 0 chr3 148117447 148117527 -79407051 - MADE1 DNA Mariner 0 80 1 279 219 18 140 chr3 148117527 148117609 -79406969 - MIR SINE MIR -131 131 65 2223 184 57 49 chr3 148119520 148120030 -79404548 + MER67A LTR ERV1 1 514 -29 22 0 0 0 chr3 148120090 148120112 -79404466 + AT_rich Low_complexity Low_complexity 1 22 0 366 85 0 0 chr3 148121400 148121447 -79403131 + Tigger2 DNA MER2_type 1 47 -2671 746 197 27 14 chr3 148121477 148121624 -79402954 - MER8 DNA MER2_type -43 196 48 225 313 0 0 chr3 148121714 148121778 -79402800 + GA-rich Low_complexity Low_complexity 3 66 0 356 43 0 0 chr3 148121830 148121877 -79402701 - L1PA3 LINE L1 -3 6152 6106 891 235 84 26 chr3 148122190 148122686 -79401892 + MER57-int LTR ERV1 882 1449 -3487 336 127 99 42 chr3 148122830 148122901 -79401677 + MER34 LTR ERV1 133 207 -335 556 230 102 71 chr3 148122962 148123385 -79401193 + MER57-int LTR ERV1 1874 2374 -2749 2078 130 38 22 chr3 148123385 148123754 -79400824 + THE1C LTR MaLR 1 375 0 556 230 102 71 chr3 148123754 148123961 -79400617 + MER57-int LTR ERV1 2374 2573 -2550 14291 235 31 43 chr3 148124069 148128619 -79395959 + L1PA16 LINE L1 8 4613 -2991 1572 146 97 4 chr3 148128619 148128886 -79395692 - AluSg SINE Alu -18 292 1 14291 235 31 43 chr3 148128886 148130392 -79394186 + L1PA16 LINE L1 4613 6758 -846 1808 95 0 0 chr3 148130392 148130623 -79393955 + AluSg/x SINE Alu 68 298 -14 14291 235 31 43 chr3 148130623 148130793 -79393785 + L1PA16 LINE L1 6758 6929 -675 6723 29 2 0 chr3 148130791 148131597 -79392981 - L1P LINE L1 -901 5245 4438 * 7373 27 1 0 chr3 148131598 148132459 -79392119 + L1PA3 LINE L1 5287 6148 -7 234 81 0 0 chr3 148132459 148132496 -79392082 + (TTAAA)n Simple_repeat Simple_repeat 4 40 0 3815 132 67 3 chr3 148132496 148133125 -79391453 + L1PA16 LINE L1 6917 7585 -19 3391 209 59 57 chr3 148133138 148134554 -79390024 + MER57-int LTR ERV1 2658 5821 -1498 969 261 35 44 chr3 148134721 148135360 -79389218 + MER57-int LTR ERV1 2459 4093 -778 1940 116 58 0 chr3 148135495 148135770 -79388808 + AluSg SINE Alu 1 291 -19 795 95 0 0 chr3 148136273 148136378 -79388200 + U6 snRNA snRNA 1 105 -2 1304 299 37 44 chr3 148136392 148137068 -79387510 + MER57-int LTR ERV1 6430 7100 -437 639 279 124 17 chr3 148137099 148137461 -79387117 + MER57A LTR ERV1 3 403 0 22 0 0 0 chr3 148137814 148137836 -79386742 + AT_rich Low_complexity Low_complexity 1 22 0 1451 226 10 7 chr3 148138137 148138443 -79386135 + AluJo SINE Alu 1 307 -5 198 0 0 0 chr3 148139163 148139185 -79385393 + (CAAAAA)n Simple_repeat Simple_repeat 3 24 0 2159 134 0 0 chr3 148139466 148139773 -79384805 + AluSx SINE Alu 5 311 -1 416 363 22 11 chr3 148139856 148140035 -79384543 - MER5A DNA MER1_type 0 189 9 2262 104 0 13 chr3 148141659 148141968 -79382610 + AluSc SINE Alu 1 305 -4 280 264 95 5 chr3 148142490 148142595 -79381983 + MIR SINE MIR 56 165 -65 1761 200 68 16 chr3 148142597 148143459 -79381119 + L1MD3 LINE L1 6826 7901 -94 287 374 29 0 chr3 148143503 148143642 -79380936 + L2 LINE L2 2896 3038 -234 22 0 0 0 chr3 148144276 148144298 -79380280 + AT_rich Low_complexity Low_complexity 1 22 0 889 213 6 6 chr3 148144302 148144471 -79380107 + MER5B DNA MER1_type 7 175 -3 228 313 52 17 chr3 148145146 148145261 -79379317 - L2 LINE L2 -236 3036 2918 1003 183 5 26 chr3 148146014 148146205 -79378373 - MER5A DNA MER1_type -2 187 1 1175 184 54 17 chr3 148146211 148146507 -79378071 + L1MC4 LINE L1 7746 7992 -3 930 219 0 10 chr3 148146548 148146753 -79377825 - MER3 DNA MER1_type -6 203 1 1781 186 6 6 chr3 148148062 148148373 -79376205 - AluJo SINE Alu -1 311 1 342 45 0 0 chr3 148149131 148149175 -79375403 + (CA)n Simple_repeat Simple_repeat 1 44 0 282 222 22 22 chr3 148149195 148149285 -79375293 + (TCTCTG)n Simple_repeat Simple_repeat 6 95 0 33 0 0 0 chr3 148150265 148150298 -79374280 + AT_rich Low_complexity Low_complexity 1 33 0 248 317 50 30 chr3 148150901 148151002 -79373576 - L3 LINE CR1 -226 1351 1249 234 279 29 0 chr3 148151016 148151084 -79373494 - MER5A DNA MER1_type 0 189 120 1191 161 21 29 chr3 148151235 148151478 -79373100 + L1MC4a LINE L1 5343 5583 -601 920 193 0 6 chr3 148152108 148152274 -79372304 + MER45A DNA AcHobo 14 178 0 553 109 27 27 chr3 148152841 148152951 -79371627 - L1MA10 LINE L1 -4 6330 6221 186 232 158 21 chr3 148153326 148153421 -79371157 + MIR SINE MIR 91 198 -64 5606 24 4 0 chr3 148153734 148154436 -79370142 + L1PA3 LINE L1 4578 5282 -864 7607 26 0 1 chr3 148154545 148155440 -79369138 + L1PA3 LINE L1 5254 6147 -8 1691 191 21 0 chr3 148156599 148156881 -79367697 - AluJo SINE Alu -24 288 1 336 204 157 54 chr3 148156881 148157028 -79367550 + L2 LINE L2 3112 3273 -40 435 38 0 0 chr3 148157533 148157586 -79366992 + (TTTA)n Simple_repeat Simple_repeat 1 53 0 1629 156 0 8 chr3 148157594 148157850 -79366728 - AluJb SINE Alu -46 266 13 1575 158 92 0 chr3 148157994 148158266 -79366312 - AluJb SINE Alu -15 297 1 481 290 12 0 chr3 148159331 148159493 -79365085 - MER103 DNA DNA 0 166 3 813 252 7 82 chr3 148159967 148160384 -79364194 + L1MC4a LINE L1 5674 6059 -1749 423 133 19 133 chr3 148160536 148160641 -79363937 + FLAM_A SINE Alu 32 124 -18 1651 163 10 24 chr3 148161293 148161588 -79362990 - AluJo SINE Alu -21 291 1 21 0 0 0 chr3 148161663 148161684 -79362894 + AT_rich Low_complexity Low_complexity 1 21 0 8665 140 65 26 chr3 148163518 148165623 -79358955 + L1PBa LINE L1 4 2489 -4373 1014 46 0 0 chr3 148165623 148165753 -79358825 + L1PA6 LINE L1 6025 6154 0 8665 140 65 26 chr3 148165753 148167065 -79357513 + L1PBa LINE L1 2489 3749 -3113 4724 105 7 10 chr3 148167149 148167881 -79356697 - L1P LINE L1 -3091 3055 2326 312 222 139 0 chr3 148169761 148169905 -79354673 - L1ME4a LINE L1 -2 6119 5956 367 284 41 67 chr3 148169976 148170170 -79354408 + LTR67 LTR ERVL 5 193 -364 302 309 16 0 chr3 148170294 148170417 -79354161 + LTR67 LTR ERVL 425 549 -8 422 346 43 47 chr3 148171227 148171438 -79353140 - L2 LINE L2 -20 3252 3043 24 32 0 0 chr3 148171674 148171705 -79352873 + AT_rich Low_complexity Low_complexity 1 31 0 205 156 0 0 chr3 148171853 148171885 -79352693 + CT-rich Low_complexity Low_complexity 4 35 0 1702 243 69 19 chr3 148172000 148172466 -79352112 - LTR16C LTR ERVL -2 489 1 497 295 90 17 chr3 148173820 148174108 -79350470 + MLT1L LTR MaLR 259 567 -48 32 26 0 0 chr3 148174584 148174623 -79349955 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr3 148174774 148174802 -79349776 + AT_rich Low_complexity Low_complexity 1 28 0 300 303 110 9 chr3 148175251 148175360 -79349218 - MIR3 SINE MIR -14 194 75 5478 11 0 0 chr3 148176225 148176839 -79347739 - L1PA2 LINE L1 -3 6152 5539 23 33 0 0 chr3 148177052 148177082 -79347496 + AT_rich Low_complexity Low_complexity 1 30 0 582 196 147 6 chr3 148177820 148177980 -79346598 - MER5A DNA MER1_type 0 189 4 287 220 0 0 chr3 148178188 148178238 -79346340 - MIR3 SINE MIR -50 158 109 405 294 0 10 chr3 148178319 148178421 -79346157 - L3b LINE CR1 -193 1390 1290 239 286 100 0 chr3 148178971 148179041 -79345537 - L2 LINE L2 -84 3188 3112 199 200 80 0 chr3 148179224 148179274 -79345304 - MIR SINE MIR -106 156 103 2259 99 3 37 chr3 148179343 148179665 -79344913 - AluSx SINE Alu -1 311 1 1300 305 98 62 chr3 148179904 148180857 -79343721 + L3 LINE CR1 219 1205 -372 445 292 191 0 chr3 148180894 148181072 -79343506 - MIR SINE MIR -31 231 20 542 375 67 14 chr3 148181172 148181455 -79343123 + L2 LINE L2 2897 3194 -78 3188 138 27 14 chr3 148181470 148181605 -79342973 - L1MB7 LINE L1 -9 6175 6043 2201 153 15 20 chr3 148181605 148181997 -79342581 + MLT1B LTR MaLR 1 390 0 3188 138 27 14 chr3 148181997 148182424 -79342154 - L1MB7 LINE L1 -141 6043 5606 1864 172 0 7 chr3 148182888 148183185 -79341393 + AluJo SINE Alu 1 295 -17 945 248 43 7 chr3 148183486 148183788 -79340790 + L1ME1 LINE L1 5849 6161 -5 191 218 91 0 chr3 148184095 148184150 -79340428 + L2 LINE L2 3183 3242 -71 5866 16 10 0 chr3 148184712 148185384 -79339194 + L1PA2 LINE L1 5474 6152 -3 327 320 27 14 chr3 148185403 148185550 -79339028 - L3 LINE CR1 -824 753 605 463 299 66 62 chr3 148185922 148186163 -79338415 + MIR SINE MIR 3 244 -18 686 65 28 28 chr3 148186472 148186580 -79337998 - HY1 scRNA scRNA -4 108 1 2256 119 3 0 chr3 148187218 148187521 -79337057 - AluSq SINE Alu -9 304 1 216 383 130 6 chr3 148187619 148187781 -79336797 - L2 LINE L2 0 3272 3091 2146 122 0 31 chr3 148188251 148188571 -79336007 + AluSx SINE Alu 1 310 -2 23 0 0 0 chr3 148188650 148188673 -79335905 + AT_rich Low_complexity Low_complexity 1 23 0 1704 130 80 26 chr3 148189111 148189450 -79335128 + MER47A DNA MER2_type 7 363 -3 1548 161 84 9 chr3 148189787 148190122 -79334456 - L1MB1 LINE L1 -4 6164 5805 2390 39 0 4 chr3 148190837 148191142 -79333436 + AluY SINE Alu 1 304 0 2128 128 26 0 chr3 148191342 148191646 -79332932 - AluSq SINE Alu -1 312 1 11328 191 39 25 chr3 148191652 148193198 -79331380 - L1MB1 LINE L1 -346 5822 4300 2270 122 0 0 chr3 148193198 148193509 -79331069 - AluSx SINE Alu -1 311 1 11328 191 39 25 chr3 148193509 148195347 -79329231 - L1MB1 LINE L1 -1868 4300 2385 2269 112 0 3 chr3 148195347 148195652 -79328926 - AluSx SINE Alu -5 307 4 11328 191 39 25 chr3 148195652 148195664 -79328914 - L1MB1 LINE L1 -3783 2385 2375 5369 144 30 36 chr3 148195657 148196336 -79328242 - L1 LINE L1 -3233 4332 3650 * 2485 90 0 0 chr3 148196336 148196648 -79327930 - AluSq SINE Alu -1 312 1 5369 144 30 36 chr3 148196648 148197270 -79327308 - L1 LINE L1 -3915 3650 3044 531 95 24 0 chr3 148197270 148197354 -79327224 - L1PA14 LINE L1 -5 6156 6071 5369 144 30 36 chr3 148197354 148197750 -79326828 - L1 LINE L1 -4521 3044 2647 998 231 53 0 chr3 148197928 148198210 -79326368 + AluSx SINE Alu 4 300 -2 4884 180 18 23 chr3 148198234 148198396 -79326182 + L1 LINE L1 2898 3059 -3087 1630 184 30 16 chr3 148198396 148198700 -79325878 + AluSx SINE Alu 1 308 -4 4884 180 18 23 chr3 148198700 148199650 -79324928 + L1 LINE L1 3059 4004 -2142 2137 120 0 3 chr3 148199654 148199945 -79324633 + AluSx SINE Alu 2 291 -21 27 29 0 0 chr3 148200166 148200200 -79324378 + AT_rich Low_complexity Low_complexity 1 34 0 11970 109 12 33 chr3 148200547 148203043 -79321535 - L1P3 LINE L1 -3953 2508 8 202 260 20 10 chr3 148203245 148203345 -79321233 + (CATA)n Simple_repeat Simple_repeat 2 102 0 538 228 12 42 chr3 148204340 148204507 -79320071 - L1MA10 LINE L1 0 6334 6173 38 22 0 0 chr3 148206683 148206728 -79317850 + AT_rich Low_complexity Low_complexity 1 45 0 2183 120 3 0 chr3 148207271 148207563 -79317015 + AluSg SINE Alu 2 294 -16 379 229 55 0 chr3 148207837 148207946 -79316632 + L1ME4a LINE L1 5794 5908 -213 187 286 71 71 chr3 148207967 148208018 -79316560 + L2 LINE L2 2943 2993 -279 639 210 91 40 chr3 148208018 148208194 -79316384 + MER5A DNA MER1_type 5 189 0 187 286 71 71 chr3 148208194 148208254 -79316324 + L2 LINE L2 2992 3054 -218 546 261 118 0 chr3 148208385 148208538 -79316040 + MER5B DNA MER1_type 8 178 0 2306 46 43 0 chr3 148210165 148210446 -79314132 + AluY SINE Alu 1 293 -18 263 308 77 31 chr3 148212027 148212157 -79312421 - MIR SINE MIR -15 247 112 466 262 63 68 chr3 148212407 148212590 -79311988 - Charlie8 DNA MER1_type -64 277 94 2435 88 0 0 chr3 148212590 148212887 -79311691 + AluSx SINE Alu 1 297 -15 466 262 63 68 chr3 148212887 148212955 -79311623 - Charlie8 DNA MER1_type -247 94 27 200 222 22 0 chr3 148213175 148213220 -79311358 + CT-rich Low_complexity Low_complexity 2 47 0 237 323 81 0 chr3 148213236 148213360 -79311218 - L3b LINE CR1 -346 1237 1104 1953 147 17 0 chr3 148214601 148214894 -79309684 - AluSx SINE Alu -14 298 1 2263 60 44 3 chr3 148215998 148216296 -79308282 + AluY SINE Alu 1 310 -1 212 284 63 63 chr3 148216833 148216928 -79307650 - MIR3 SINE MIR -5 203 109 245 324 14 0 chr3 148217251 148217325 -79307253 + L2 LINE L2 3229 3303 -10 805 178 137 18 chr3 148218591 148218810 -79305768 - MER96B DNA MER1_type? 0 417 173 312 338 104 7 chr3 148220906 148221060 -79303518 - MIR SINE MIR -62 200 32 22 35 0 0 chr3 148221469 148221498 -79303080 + AT_rich Low_complexity Low_complexity 1 29 0 831 135 10 121 chr3 148221773 148221980 -79302598 + MER20 DNA MER1_type 19 202 -17 381 184 61 31 chr3 148222126 148222224 -79302354 + L1MB8 LINE L1 6003 6103 -75 1238 159 124 27 chr3 148222228 148222486 -79302092 + AluJo SINE Alu 6 288 -24 364 149 15 0 chr3 148222491 148222558 -79302020 + L1MB7 LINE L1 6096 6163 -21 448 240 55 12 chr3 148223000 148223170 -79301408 - L1MA10 LINE L1 -8 6326 5984 467 228 157 68 chr3 148223171 148223553 -79301025 - L1ME3A LINE L1 -26 6144 5729 235 214 29 0 chr3 148223559 148223629 -79300949 - L1ME3A LINE L1 -775 5389 5318 381 250 192 34 chr3 148223634 148223926 -79300652 - L1ME3A LINE L1 -886 5260 4923 233 254 60 15 chr3 148224244 148224311 -79300267 - MIR SINE MIR -35 227 158 277 277 58 66 chr3 148225712 148225849 -79298729 + MER5B DNA MER1_type 11 146 -32 * 325 259 30 59 chr3 148225731 148225866 -79298712 - MER5A DNA MER1_type -28 161 31 227 179 48 107 chr3 148226484 148226568 -79298010 - L2 LINE L2 0 3313 3235 2397 95 0 0 chr3 148226849 148227155 -79297423 - AluSg SINE Alu -4 306 1 621 176 210 40 chr3 148227321 148227497 -79297081 - MER3 DNA MER1_type -2 207 2 674 271 161 20 chr3 148229154 148229510 -79295068 - L2 LINE L2 0 3313 875 335 204 68 0 chr3 148229511 148229599 -79294979 + L2 LINE L2 3164 3257 -56 189 359 31 46 chr3 148230029 148230224 -79294354 - L3 LINE CR1 -707 870 679 344 244 76 8 chr3 148231447 148231566 -79293012 - MER112 DNA MER1_type -14 246 120 2289 113 7 0 chr3 148232288 148232597 -79291981 + AluSx SINE Alu 2 312 0 256 128 0 0 chr3 148233069 148233108 -79291470 + MADE1 DNA Mariner 1 39 -41 330 307 93 21 chr3 148233789 148233929 -79290649 + MIR SINE MIR 113 262 0 2508 73 0 13 chr3 148234352 148234667 -79289911 + AluY SINE Alu 1 311 0 27 0 0 0 chr3 148235471 148235498 -79289080 + AT_rich Low_complexity Low_complexity 1 27 0 863 227 13 80 chr3 148236166 148236391 -79288187 - MER58A DNA MER1_type -3 221 12 1786 161 47 0 chr3 148236391 148236689 -79287889 - AluSx SINE Alu 0 312 1 1608 157 0 20 chr3 148237877 148238126 -79286452 + AluJb SINE Alu 1 244 -68 291 28 0 0 chr3 148238174 148238210 -79286368 + (CA)n Simple_repeat Simple_repeat 2 37 0 2225 119 0 0 chr3 148238425 148238728 -79285850 + AluSx SINE Alu 1 303 -9 204 135 0 0 chr3 148238852 148238889 -79285689 + (CA)n Simple_repeat Simple_repeat 1 37 0 1965 144 10 7 chr3 148239422 148239727 -79284851 + AluSx SINE Alu 1 306 -6 27 0 0 0 chr3 148243123 148243150 -79281428 + AT_rich Low_complexity Low_complexity 1 27 0 2186 130 0 0 chr3 148243709 148244017 -79280561 - AluSx SINE Alu -4 308 1 407 274 67 7 chr3 148244041 148244176 -79280402 - MIR SINE MIR -82 180 38 21 0 0 0 chr3 148246781 148246802 -79277776 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 148247625 148247649 -79276929 + AT_rich Low_complexity Low_complexity 1 24 0 2141 100 10 16 chr3 148248895 148249206 -79275372 + AluSx SINE Alu 3 311 -1 1774 154 7 10 chr3 148249407 148249706 -79274872 - AluJb SINE Alu -14 298 1 219 36 0 0 chr3 148250165 148250193 -79274385 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 24 32 0 0 chr3 148250295 148250326 -79274252 + AT_rich Low_complexity Low_complexity 1 31 0 1191 206 23 0 chr3 148251156 148251370 -79273208 + MER20 DNA MER1_type 1 219 0 235 351 13 0 chr3 148252244 148252321 -79272257 - L3b LINE CR1 -247 1336 1259 417 211 277 114 chr3 148252430 148252852 -79271726 + L2 LINE L2 209 699 -2615 2573 260 152 65 chr3 148252857 148253501 -79271077 + L2 LINE L2 1286 1872 -1441 189 0 0 0 chr3 148253501 148253522 -79271056 + (CCA)n Simple_repeat Simple_repeat 3 23 0 2573 260 152 65 chr3 148253522 148254546 -79270032 + L2 LINE L2 1872 3101 -212 789 237 71 5 chr3 148255058 148255256 -79269322 - MER51C LTR ERV1 -1 639 429 2356 71 17 3 chr3 148255259 148255555 -79269023 - AluSp SINE Alu -13 300 1 2285 82 20 0 chr3 148255568 148255872 -79268706 - AluSq SINE Alu -3 310 1 245 205 152 98 chr3 148255912 148256024 -79268554 - MER51C LTR ERV1 -189 445 328 600 195 9 0 chr3 148256159 148256272 -79268306 - MER51-int LTR ERV1 -4 7812 7699 1738 166 0 66 chr3 148257214 148257534 -79267044 + AluJo SINE Alu 3 301 -11 779 144 0 17 chr3 148257551 148257669 -79266909 + AluJ SINE Alu 7 122 -190 877 200 7 0 chr3 148257735 148257885 -79266693 + AluJ SINE Alu 132 282 -30 509 0 16 0 chr3 148257887 148257948 -79266630 + (CTAAA)n Simple_repeat Simple_repeat 3 64 0 2735 186 113 83 chr3 148258745 148259179 -79265399 + Ricksha_a DNA DNA 7 426 -2825 2075 109 0 7 chr3 148259179 148259463 -79265115 - AluSx SINE Alu -30 282 1 2735 186 113 83 chr3 148259463 148260188 -79264390 + Ricksha_a DNA DNA 426 1168 -13 303 316 66 7 chr3 148260369 148260505 -79264073 + L1ME LINE L1 5539 5682 -439 195 42 0 0 chr3 148260521 148260545 -79264033 + (TAA)n Simple_repeat Simple_repeat 2 25 0 496 229 57 114 chr3 148260599 148260726 -79263852 + MIR SINE MIR 26 136 -126 3588 146 31 65 chr3 148260726 148261509 -79263069 + L1MC2 LINE L1 5580 6335 -9 496 229 57 114 chr3 148261509 148261608 -79262970 + MIR SINE MIR 136 239 -23 3502 209 64 25 chr3 148262507 148263772 -79260806 + L1ME1 LINE L1 4863 6166 0 746 115 62 39 chr3 148264436 148264566 -79260012 + FLAM_C SINE Alu 1 133 0 475 266 32 37 chr3 148269923 148270111 -79254467 - HAL1 LINE L1 -44 2463 2277 354 298 126 34 chr3 148270232 148270494 -79254084 + MLT1I LTR MaLR 1 286 -123 409 262 80 58 chr3 148270573 148270848 -79253730 - HAL1 LINE L1 -424 2083 1803 332 190 250 0 chr3 148270936 148271036 -79253542 - HAL1 LINE L1 -873 1634 1510 1299 191 81 0 chr3 148271062 148271308 -79253270 + Tigger7 DNA MER2_type 2 267 -466 545 206 0 10 chr3 148271303 148271405 -79253173 + Tigger7 DNA MER2_type 2389 2489 -2 * 475 249 43 101 chr3 148271410 148271827 -79252751 - HAL1 LINE L1 -1015 1492 1100 543 306 110 76 chr3 148271884 148271983 -79252595 - HAL1 LINE L1 -1580 927 833 2812 45 28 0 chr3 148271983 148272342 -79252236 + L1PA3 LINE L1 5787 6155 0 543 306 110 76 chr3 148272342 148272495 -79252083 - HAL1 LINE L1 -1674 833 687 1748 170 43 0 chr3 148272495 148272818 -79251760 + MER1B DNA MER1_type 1 337 0 543 306 110 76 chr3 148272818 148273181 -79251397 - HAL1 LINE L1 -1820 687 290 1516 182 7 7 chr3 148274125 148274394 -79250184 + AluJb SINE Alu 3 271 -41 432 0 0 0 chr3 148274408 148274456 -79250122 + (TG)n Simple_repeat Simple_repeat 2 49 0 611 94 94 0 chr3 148274458 148274554 -79250024 - AluSp/q SINE Alu -21 292 188 1817 102 0 4 chr3 148274554 148274790 -79249788 - AluSx SINE Alu -77 235 1 765 158 15 15 chr3 148278266 148278399 -79246179 + FLAM_C SINE Alu 1 133 0 208 192 154 0 chr3 148278909 148278961 -79245617 - L2 LINE L2 0 3313 3254 822 334 118 15 chr3 148279078 148279623 -79244955 - L2 LINE L2 -261 3011 2419 498 285 7 29 chr3 148281037 148281174 -79243404 + MIR SINE MIR 8 141 -121 2588 170 33 16 chr3 148281176 148281689 -79242889 + L1MB5 LINE L1 5653 6174 0 270 81 0 0 chr3 148282072 148282109 -79242469 + (T)n Simple_repeat Simple_repeat 1 37 0 6386 187 48 22 chr3 148282122 148283608 -79240970 - Looper DNA T2_type -13 1545 21 254 197 28 42 chr3 148284650 148284721 -79239857 - HAL1 LINE L1 -989 1518 1449 503 287 109 25 chr3 148284849 148285253 -79239325 - HAL1 LINE L1 -1260 1247 810 215 61 30 0 chr3 148285763 148285796 -79238782 + (CA)n Simple_repeat Simple_repeat 1 34 0 28 0 0 0 chr3 148285840 148285868 -79238710 + AT_rich Low_complexity Low_complexity 1 28 0 859 203 104 47 chr3 148286399 148286611 -79237967 + MER58A DNA MER1_type 1 224 0 1851 129 4 22 chr3 148286993 148287271 -79237307 + AluSq SINE Alu 22 294 -19 24 67 0 0 chr3 148287476 148287521 -79237057 + AT_rich Low_complexity Low_complexity 1 45 0 1007 47 78 0 chr3 148287661 148287790 -79236788 + MER85 DNA T2_type 1 139 0 333 266 124 90 chr3 148288066 148288389 -79236189 + L1ME4a LINE L1 5568 5901 -220 23 54 0 0 chr3 148288513 148288550 -79236028 + AT_rich Low_complexity Low_complexity 1 37 0 363 266 118 6 chr3 148288747 148288916 -79235662 - MIR SINE MIR -1 261 74 2132 120 0 3 chr3 148290037 148290329 -79234249 + AluSx SINE Alu 1 291 -21 27 29 0 0 chr3 148290549 148290583 -79233995 + AT_rich Low_complexity Low_complexity 1 34 0 501 47 0 0 chr3 148291679 148291743 -79232835 + (CATA)n Simple_repeat Simple_repeat 2 65 0 264 243 162 9 chr3 148291766 148291877 -79232701 + MER103 DNA DNA 9 136 -30 375 238 103 32 chr3 148291897 148292023 -79232555 + MER5A DNA MER1_type 33 167 -22 263 208 78 39 chr3 148292125 148292202 -79232376 - L2 LINE L2 0 3272 3193 598 281 178 42 chr3 148292482 148292841 -79231737 - L2 LINE L2 -3 3310 2903 506 254 118 48 chr3 148293333 148293561 -79231017 - MIR SINE MIR -6 256 13 5768 149 25 6 chr3 148295193 148296145 -79228433 - Tigger1 DNA MER2_type -1425 993 24 2118 225 63 27 chr3 148296156 148297166 -79227412 + L1M4c LINE L1 1267 2409 -3975 1688 175 77 24 chr3 148297168 148297545 -79227033 + L1MB8 LINE L1 5776 6172 -6 306 337 0 0 chr3 148297563 148297655 -79226923 + MER5A DNA MER1_type 14 105 -84 198 333 77 0 chr3 148297698 148297776 -79226802 - MIR3 SINE MIR -49 159 76 3071 62 5 0 chr3 148299047 148299447 -79225131 + L1PA5 LINE L1 5753 6154 0 180 0 0 0 chr3 148299453 148299473 -79225105 + (TAAAAA)n Simple_repeat Simple_repeat 4 23 0 1083 231 84 17 chr3 148299731 148300030 -79224548 - MER2 DNA MER2_type -25 320 2 1002 216 131 19 chr3 148300162 148300482 -79224096 + MLT1A2 LTR MaLR 19 374 0 2149 113 3 7 chr3 148301297 148301598 -79222980 + AluSx SINE Alu 1 300 -12 372 22 0 0 chr3 148303537 148303582 -79220996 + (CA)n Simple_repeat Simple_repeat 1 45 0 2360 78 3 7 chr3 148303592 148303900 -79220678 + AluY SINE Alu 1 307 -4 4489 188 109 61 chr3 148307577 148307968 -79216610 - Charlie1a DNA MER1_type -1306 1455 1084 2476 65 0 16 chr3 148307968 148308275 -79216303 - AluY SINE Alu -9 302 1 4489 188 109 61 chr3 148308275 148309269 -79215309 - Charlie1a DNA MER1_type -1677 1084 3 24 53 0 0 chr3 148309532 148309570 -79215008 + AT_rich Low_complexity Low_complexity 1 38 0 1625 198 7 7 chr3 148309672 148309975 -79214603 + AluJo SINE Alu 1 303 -9 194 191 0 24 chr3 148310479 148310521 -79214057 + L3b LINE CR1 1290 1330 -253 595 260 20 14 chr3 148311002 148311148 -79213430 + MER5B DNA MER1_type 8 154 -24 354 266 216 30 chr3 148311227 148311426 -79213152 + MIR SINE MIR 25 260 -2 185 276 26 86 chr3 148311530 148311646 -79212932 - MIR SINE MIR 0 262 154 270 247 215 0 chr3 148312208 148312301 -79212277 - MIR SINE MIR -110 152 40 865 200 93 70 chr3 148312806 148313121 -79211457 + L1ME1 LINE L1 5858 6184 0 305 146 0 18 chr3 148313961 148313972 -79210606 + MER3 DNA MER1_type 37 46 -163 574 167 59 184 chr3 148313972 148314211 -79210367 - MER3 DNA MER1_type 0 209 1 257 217 208 17 chr3 148316044 148316164 -79208414 + MIR SINE MIR 118 260 -2 2440 71 0 13 chr3 148317261 148317571 -79207007 + AluY SINE Alu 1 306 -5 1099 153 5 25 chr3 148318524 148318726 -79205852 + L1MB1 LINE L1 3 200 -6663 * 13293 162 41 22 chr3 148318706 148320917 -79203661 + L1MB1 LINE L1 620 2786 -4098 1930 151 10 0 chr3 148320917 148321215 -79203363 - AluSx SINE Alu -11 301 1 13293 162 41 22 chr3 148321215 148321284 -79203294 + L1MB1 LINE L1 2786 2852 -4032 2024 128 30 3 chr3 148321284 148321581 -79202997 + AluSg SINE Alu 1 305 -5 13293 162 41 22 chr3 148321581 148323419 -79201159 + L1MB1 LINE L1 2852 4652 -2232 2216 129 0 0 chr3 148323419 148323730 -79200848 + AluSx SINE Alu 1 311 -1 13293 162 41 22 chr3 148323730 148325276 -79199302 + L1MB1 LINE L1 4652 6538 -346 2116 125 26 0 chr3 148325282 148325586 -79198992 + AluSq SINE Alu 1 312 -1 2406 39 0 4 chr3 148325786 148326091 -79198487 - AluY SINE Alu 0 304 1 1656 161 84 9 chr3 148326806 148327141 -79197437 + L1MB1 LINE L1 6521 6880 -4 1812 130 80 26 chr3 148327478 148327817 -79196761 - MER47A DNA MER2_type -3 363 7 23 0 0 0 chr3 148328255 148328278 -79196300 + AT_rich Low_complexity Low_complexity 1 23 0 2117 122 0 31 chr3 148328357 148328677 -79195901 - AluSx SINE Alu -2 310 1 212 383 130 6 chr3 148329147 148329309 -79195269 + L2 LINE L2 3091 3272 0 2230 119 3 0 chr3 148329407 148329710 -79194868 + AluSq SINE Alu 1 304 -9 289 254 155 0 chr3 148330156 148330227 -79194351 + FLAM_A SINE Alu 34 115 -18 685 65 28 28 chr3 148330348 148330456 -79194122 + HY1 scRNA scRNA 1 108 -4 470 299 66 62 chr3 148330765 148331006 -79193572 - MIR SINE MIR -18 244 3 326 320 27 14 chr3 148331378 148331525 -79193053 + L3 LINE CR1 605 753 -824 7720 15 0 0 chr3 148331544 148333201 -79191377 - L1PA2 LINE L1 -3 6152 4489 12182 29 0 1 chr3 148333201 148334671 -79189907 + L1PA2 LINE L1 3002 4470 -1676 743 160 0 30 chr3 148334795 148334926 -79189652 + FLAM_C SINE Alu 1 127 -16 27 0 0 0 chr3 148334926 148334953 -79189625 + AT_rich Low_complexity Low_complexity 1 27 0 464 331 102 55 chr3 148334966 148335329 -79189249 + L3 LINE CR1 841 1220 -357 213 287 181 0 chr3 148335380 148335474 -79189104 + L3 LINE CR1 1229 1339 -238 370 263 126 31 chr3 148336227 148336855 -79187723 - L1ME4a LINE L1 -94 6027 5337 2659 157 50 128 chr3 148336945 148337695 -79186883 + L1M4 LINE L1 4581 5255 -891 213 39 0 0 chr3 148337695 148337721 -79186857 + (TG)n Simple_repeat Simple_repeat 2 27 0 2659 157 50 128 chr3 148337721 148337842 -79186736 + L1M4 LINE L1 5255 5384 -762 290 269 0 42 chr3 148337839 148337958 -79186620 + L1MB5 LINE L1 4716 4829 -1317 * 315 183 17 0 chr3 148337957 148338017 -79186561 - L1 LINE L1 -1159 4987 4927 * 1758 193 122 34 chr3 148338015 148338704 -79185874 + L1MB5 LINE L1 5382 6149 -22 3179 187 144 120 chr3 148339101 148340691 -79183887 + L1MC4a LINE L1 6174 7801 -7 323 76 76 38 chr3 148341063 148341142 -79183436 + GA-rich Low_complexity Low_complexity 1 82 0 227 245 0 20 chr3 148341143 148341192 -79183386 + polypurine Low_complexity Low_complexity 1 48 0 216 0 0 0 chr3 148342473 148342497 -79182081 + (A)n Simple_repeat Simple_repeat 1 24 0 281 298 159 48 chr3 148342572 148342721 -79181857 - MIR SINE MIR -6 256 76 889 199 26 62 chr3 148342721 148342947 -79181631 - MER20 DNA MER1_type 0 219 2 281 298 159 48 chr3 148342947 148343005 -79181573 - MIR SINE MIR -186 76 26 1624 210 3 16 chr3 148344420 148344725 -79179853 + AluJo SINE Alu 1 301 -11 2533 143 38 5 chr3 148345176 148345596 -79178982 + Tigger2a DNA MER2_type 1 434 0 262 257 176 91 chr3 148347303 148347490 -79177088 - MIR SINE MIR -24 238 36 660 255 184 14 chr3 148347722 148347934 -79176644 - MIR SINE MIR -4 258 11 472 262 64 59 chr3 148347969 148348156 -79176422 - MIR SINE MIR -70 192 5 25 31 0 0 chr3 148350485 148350517 -79174061 + GC_rich Low_complexity Low_complexity 1 32 0 215 100 0 25 chr3 148350591 148350631 -79173947 + (GGGA)n Simple_repeat Simple_repeat 1 39 0 446 244 11 0 chr3 148352838 148352928 -79171650 - MER2 DNA MER2_type -253 92 2 259 198 0 52 chr3 148352928 148353024 -79171554 + (CATATA)n Simple_repeat Simple_repeat 2 92 0 769 196 28 7 chr3 148353709 148353852 -79170726 - FRAM SINE Alu -30 146 1 1817 181 0 0 chr3 148354851 148355143 -79169435 + AluJo SINE Alu 16 307 -5 2498 135 41 2 chr3 148355421 148355845 -79168733 + MER6A DNA MER2_type -2 437 -168 19501 161 25 28 chr3 148355848 148358842 -79165736 + L1M1 LINE L1 20 3021 -4544 531 95 24 0 chr3 148358842 148358926 -79165652 + L1PA14 LINE L1 6071 6156 -5 19501 161 25 28 chr3 148358926 148359544 -79165034 + L1M1 LINE L1 3021 3639 -3926 2485 90 0 0 chr3 148359544 148359856 -79164722 + AluSq SINE Alu 1 312 -1 19501 161 25 28 chr3 148359856 148360540 -79164038 + L1M1 LINE L1 3639 4323 -3242 2163 111 10 0 chr3 148360540 148360846 -79163732 + AluSx SINE Alu 4 312 0 19501 161 25 28 chr3 148360846 148361022 -79163556 + L1M1 LINE L1 4323 4498 -3067 1635 182 30 17 chr3 148361022 148361324 -79163254 + AluSx SINE Alu 1 306 -6 19501 161 25 28 chr3 148361324 148362277 -79162301 + L1M1 LINE L1 4498 5430 -2135 2022 130 36 17 chr3 148362277 148362578 -79162000 + AluSx SINE Alu 2 308 -4 19501 161 25 28 chr3 148362578 148363199 -79161379 + L1M1 LINE L1 5430 6051 -1514 1027 199 0 0 chr3 148363208 148363389 -79161189 + AluJb SINE Alu 91 271 -41 282 160 0 0 chr3 148363392 148363442 -79161136 + GA-rich Low_complexity Low_complexity 3 52 0 2277 219 43 38 chr3 148364743 148365410 -79159168 + L1MA5 LINE L1 1239 1912 -4937 1897 125 10 44 chr3 148365410 148365706 -79158872 + AluSg SINE Alu 1 286 -24 2277 219 43 38 chr3 148365706 148365777 -79158801 + L1MA5 LINE L1 1912 1981 -4868 357 121 15 0 chr3 148365746 148365812 -79158766 + L1MA5A LINE L1 6809 6875 -124 * 3048 182 36 25 chr3 148365814 148366482 -79158096 + L1MA5 LINE L1 2174 2856 -3992 7319 47 0 0 chr3 148366482 148367455 -79157123 - L1PA5 LINE L1 -6 6148 5175 3048 182 36 25 chr3 148367455 148367664 -79156914 + L1MA5 LINE L1 2856 3061 -3787 * 5521 155 28 23 chr3 148367661 148369793 -79154785 + L1MA5 LINE L1 4846 7002 0 247 259 94 59 chr3 148369845 148370015 -79154563 - MER5A DNA MER1_type -2 187 12 392 281 168 5 chr3 148370036 148370221 -79154357 + MLT1L LTR MaLR 399 613 -2 21 0 0 0 chr3 148370525 148370546 -79154032 + AT_rich Low_complexity Low_complexity 1 21 0 2402 100 0 0 chr3 148370637 148370947 -79153631 - AluSg SINE Alu 0 310 1 195 300 56 72 chr3 148371339 148371508 -79153070 - MIR SINE MIR -56 206 38 2310 112 0 0 chr3 148371894 148372199 -79152379 + AluSg SINE Alu 1 305 -5 2101 119 3 3 chr3 148372734 148373036 -79151542 - AluSq SINE Alu -11 302 1 910 144 132 0 chr3 148373255 148373422 -79151156 + MER5A DNA MER1_type 1 189 0 12923 137 60 13 chr3 148373504 148375319 -79149259 - Tigger1 DNA MER2_type 0 2418 469 8467 26 18 269 chr3 148375319 148377150 -79147428 - SVA Other Other 0 1386 16 12923 137 60 13 chr3 148377150 148377639 -79146939 - Tigger1 DNA MER2_type -1949 469 5 2579 97 8 0 chr3 148378594 148378946 -79145632 - THE1A LTR MaLR 0 355 1 11684 87 15 1 chr3 148378946 148380504 -79144074 - THE1A-int LTR MaLR 0 1580 1 2714 85 6 0 chr3 148380504 148380857 -79143721 - THE1A LTR MaLR 0 355 1 1735 236 123 18 chr3 148381372 148381876 -79142702 + MER69 DNA AcHobo 1 557 -669 302 167 156 21 chr3 148381872 148381968 -79142610 + MER69 DNA AcHobo 2118 2226 -300 * 806 148 0 8 chr3 148381968 148382091 -79142487 + AluSq/x SINE Alu 1 123 -186 460 43 0 29 chr3 148382091 148382160 -79142418 + (TAAA)n Simple_repeat Simple_repeat 2 68 0 2250 80 0 33 chr3 148382166 148382465 -79142113 + AluY SINE Alu 1 289 -22 596 244 58 18 chr3 148382495 148382717 -79141861 + MER69 DNA AcHobo 2222 2452 -74 1851 152 122 68 chr3 148382717 148383145 -79141433 + MLT2B2 LTR ERVL 1 451 -64 2115 121 4 0 chr3 148383176 148383456 -79141122 - AluSx SINE Alu -26 286 6 283 244 0 13 chr3 148383477 148383555 -79141023 + MER69 DNA AcHobo 2449 2525 -1 235 161 16 16 chr3 148383661 148383723 -79140855 + GA-rich Low_complexity Low_complexity 3 64 0 633 310 56 28 chr3 148383763 148383976 -79140602 + MIR SINE MIR 28 246 -16 542 244 59 52 chr3 148384326 148384597 -79139981 + MER69 DNA AcHobo 2139 2411 -115 450 282 189 19 chr3 148385343 148385602 -79138976 - L3 LINE CR1 -11 1566 1264 379 361 172 11 chr3 148385789 148386149 -79138429 - L2 LINE L2 0 3272 2855 2076 156 34 36 chr3 148386149 148386706 -79137872 + MLT2A2 LTR ERVL 1 554 0 466 298 65 36 chr3 148386867 148387142 -79137436 - L2 LINE L2 -661 2653 2371 928 78 78 0 chr3 148387467 148387595 -79136983 + MER85 DNA T2_type 1 138 -1 385 321 61 0 chr3 148388813 148388944 -79135634 + MIR3 SINE MIR 28 166 -42 212 312 54 21 chr3 148389084 148389177 -79135401 - L2 LINE L2 -5 3267 3172 980 269 150 21 chr3 148389200 148389679 -79134899 - L2 LINE L2 -610 2704 2164 1231 221 123 39 chr3 148391024 148391464 -79133114 - MER113 DNA MER1_type? -43 478 2 409 246 232 24 chr3 148395750 148395961 -79128617 - MIR SINE MIR 0 262 8 2318 111 0 3 chr3 148396057 148396363 -79128215 + AluSx SINE Alu 1 305 -7 189 0 0 0 chr3 148396739 148396760 -79127818 + (T)n Simple_repeat Simple_repeat 1 21 0 2417 92 0 0 chr3 148396936 148397239 -79127339 + AluSg SINE Alu 1 303 -7 187 268 0 0 chr3 148397584 148397625 -79126953 + L2 LINE L2 3212 3252 -20 972 177 29 6 chr3 148398425 148398600 -79125978 - MER5A DNA MER1_type -10 179 1 430 212 15 19 chr3 148399481 148399606 -79124972 - MER5A DNA MER1_type -1 188 10 464 257 13 53 chr3 148399692 148399844 -79124734 + L2 LINE L2 3119 3264 -49 806 234 130 0 chr3 148399847 148400078 -79124500 + HAL1 LINE L1 141 401 -2106 231 313 61 10 chr3 148400175 148400274 -79124304 + L2 LINE L2 2969 3072 -241 396 0 0 0 chr3 148400408 148400452 -79124126 + (TG)n Simple_repeat Simple_repeat 1 44 0 322 223 118 87 chr3 148400980 148401017 -79123561 - L1M4 LINE L1 -1051 5095 5061 2162 103 0 47 chr3 148401017 148401336 -79123242 - AluSx SINE Alu -8 304 1 322 223 118 87 chr3 148401336 148401437 -79123141 - L1M4 LINE L1 -1085 5061 4965 2319 78 0 47 chr3 148401437 148401757 -79122821 - AluY SINE Alu -1 310 6 322 223 118 87 chr3 148401757 148401846 -79122732 - L1M4 LINE L1 -1181 4965 4860 1316 141 0 0 chr3 148401870 148402062 -79122516 - MLT1B LTR MaLR 0 390 199 543 155 0 10 chr3 148402072 148402169 -79122409 - MLT1B LTR MaLR -294 96 1 30 59 0 0 chr3 148402460 148402511 -79122067 + AT_rich Low_complexity Low_complexity 1 51 0 334 356 8 0 chr3 148402582 148402700 -79121878 - MIR SINE MIR -135 127 9 2123 107 3 23 chr3 148403082 148403405 -79121173 + AluSx SINE Alu 1 317 0 191 211 0 0 chr3 148404065 148404103 -79120475 + MIR3 SINE MIR 169 206 -2 925 217 271 26 chr3 148404957 148405381 -79119197 + LTR50 LTR ERVL 1 528 -267 206 300 73 36 chr3 148405536 148405646 -79118932 + L2 LINE L2 2267 2380 -934 2650 221 100 60 chr3 148405970 148406247 -79118331 - L1MEc LINE L1 -4939 1457 1193 2271 119 0 3 chr3 148406247 148406558 -79118020 - AluSx SINE Alu -1 311 2 2650 221 100 60 chr3 148406558 148407319 -79117259 - L1MEc LINE L1 -5203 1193 377 226 253 35 46 chr3 148407334 148407421 -79117157 + MIR SINE MIR 164 249 -13 2479 69 7 0 chr3 148407478 148407782 -79116796 - AluY SINE Alu -5 306 1 454 278 53 8 chr3 148407986 148408119 -79116459 + LTR67 LTR ERVL 349 487 -70 435 233 68 45 chr3 148408126 148408259 -79116319 - L1ME3A LINE L1 -11 6159 6024 30 69 0 0 chr3 148511435 148511493 -79013085 + GC_rich Low_complexity Low_complexity 1 58 0 298 284 34 0 chr3 148512300 148512388 -79012190 + L2 LINE L2 3223 3313 0 330 221 147 30 chr3 148515103 148515237 -79009341 + MIR SINE MIR 14 160 -61 333 332 27 76 chr3 148517509 148517732 -79006846 - L1MCa LINE L1 -4002 2424 2213 280 281 21 0 chr3 148518766 148518862 -79005716 - MLT1C LTR MaLR -40 427 330 237 206 0 55 chr3 148518885 148518958 -79005620 - MLT1C LTR MaLR -222 152 84 1377 65 45 10 chr3 148520996 148521195 -79003383 + AluY SINE Alu 106 311 0 274 223 170 0 chr3 148524706 148524818 -78999760 + MLT1F1 LTR MaLR 311 441 -126 210 206 15 84 chr3 148524977 148525108 -78999470 + (GCGTG)n Simple_repeat Simple_repeat 2 123 0 2246 104 3 3 chr3 148525496 148525805 -78998773 - AluSx SINE Alu -2 310 2 2138 92 7 26 chr3 148525946 148526250 -78998328 + AluSg SINE Alu 1 298 -12 2167 120 0 0 chr3 148526259 148526558 -78998020 + AluSq SINE Alu 1 299 -14 571 85 79 13 chr3 148526959 148527266 -78997312 + (CA)n Simple_repeat Simple_repeat 1 327 0 558 102 72 23 chr3 148527287 148527732 -78996846 + (CA)n Simple_repeat Simple_repeat 1 466 0 409 53 77 41 chr3 148527751 148527920 -78996658 + (CA)n Simple_repeat Simple_repeat 1 175 0 444 79 56 45 chr3 148527949 148528127 -78996451 + (CA)n Simple_repeat Simple_repeat 1 180 0 767 124 0 0 chr3 148535555 148535660 -78988918 + AluJo/FLAM SINE Alu 6 110 -202 1552 70 0 0 chr3 148535662 148535849 -78988729 - AluSp SINE Alu -19 294 108 2120 130 0 0 chr3 148536112 148536412 -78988166 - AluJo SINE Alu -12 300 1 732 254 10 38 chr3 148538525 148538647 -78985931 + MLT1A1 LTR MaLR 163 278 -87 2394 61 3 0 chr3 148538647 148538942 -78985636 - AluY SINE Alu -15 296 1 732 254 10 38 chr3 148538942 148539028 -78985550 + MLT1A1 LTR MaLR 278 365 0 2124 114 7 3 chr3 148539596 148539903 -78984675 + AluSx SINE Alu 1 308 -4 211 367 8 0 chr3 148540219 148540347 -78984231 + (TG)n Simple_repeat Simple_repeat 1 129 0 1621 188 7 10 chr3 148540472 148540770 -78983808 + AluJo SINE Alu 3 299 -13 1962 120 0 0 chr3 148541373 148541648 -78982930 + AluSq SINE Alu 1 275 -38 543 227 0 0 chr3 148541653 148541781 -78982797 + G-rich Low_complexity Low_complexity 4 131 0 207 204 0 0 chr3 148541783 148541832 -78982746 + GA-rich Low_complexity Low_complexity 1 49 0 499 289 127 9 chr3 148541986 148542214 -78982364 + MLT1F1 LTR MaLR 32 286 -281 850 120 0 0 chr3 148544232 148544349 -78980229 + AluSg/x SINE Alu 174 290 -20 2276 94 0 0 chr3 148544973 148545280 -78979298 + AluY SINE Alu 1 307 -4 2010 144 0 10 chr3 148545323 148545458 -78979120 + AluJb SINE Alu 1 136 -176 2353 54 30 0 chr3 148545458 148545756 -78978822 + AluY SINE Alu 1 307 -4 2010 144 0 10 chr3 148545756 148545932 -78978646 + AluJb SINE Alu 136 309 -3 259 211 40 26 chr3 148547135 148547211 -78977367 + G-rich Low_complexity Low_complexity 3 79 0 1946 127 7 0 chr3 148549687 148549970 -78974608 - AluSx SINE Alu -13 299 15 328 233 17 58 chr3 148550333 148550453 -78974125 + LTR33 LTR ERVL 44 158 -363 1038 255 163 12 chr3 148550585 148551008 -78973570 - MLT1D LTR MaLR -17 488 2 707 175 83 0 chr3 148552455 148552575 -78972003 - FLAM_C SINE Alu -2 131 2 21 0 0 0 chr3 148553439 148553460 -78971118 + AT_rich Low_complexity Low_complexity 1 21 0 224 254 42 14 chr3 148553954 148554025 -78970553 - MIR SINE MIR -79 183 111 2157 47 0 0 chr3 148556491 148556748 -78967830 - AluY SINE Alu -53 258 2 228 196 185 0 chr3 148563093 148563185 -78961393 - L2 LINE L2 -305 3008 2900 444 311 96 47 chr3 148563508 148563602 -78960976 + L1M4 LINE L1 2682 2770 -3376 2466 58 0 13 chr3 148563602 148563912 -78960666 + AluY SINE Alu 1 306 -5 444 311 96 47 chr3 148563912 148564170 -78960408 + L1M4 LINE L1 2770 3014 -3132 1820 169 0 7 chr3 148564170 148564471 -78960107 + AluJo SINE Alu 1 299 -13 444 311 96 47 chr3 148564471 148564819 -78959759 + L1M4 LINE L1 3014 3343 -2803 2312 93 0 6 chr3 148564819 148565130 -78959448 - AluSq SINE Alu -4 309 1 444 311 96 47 chr3 148565130 148565279 -78959299 + L1M4 LINE L1 3343 3679 -2467 240 333 70 34 chr3 148566072 148566486 -78958092 - L1M4c LINE L1 -2919 3463 3035 377 362 0 18 chr3 148566646 148566809 -78957769 + (TG)n Simple_repeat Simple_repeat 1 160 0 265 353 6 18 chr3 148566844 148567011 -78957567 + (TG)n Simple_repeat Simple_repeat 2 166 0 1214 238 18 13 chr3 148567247 148567555 -78957023 - MLT1B LTR MaLR -7 460 75 2127 120 0 3 chr3 148567560 148567860 -78956718 - AluSx SINE Alu -13 299 1 369 339 110 33 chr3 148567863 148568120 -78956458 - L1M4c LINE L1 -4841 1543 1288 895 205 0 0 chr3 148568678 148568844 -78955734 - AluJb SINE Alu -10 302 137 610 231 134 17 chr3 148568847 148569085 -78955493 - L1MB5 LINE L1 -27 6147 5882 453 267 48 0 chr3 148569271 148569436 -78955142 + MER58A DNA MER1_type 3 175 -49 225 114 0 0 chr3 148569967 148570002 -78954576 - Alu SINE Alu -62 71 37 2228 94 3 13 chr3 148571721 148572020 -78952558 + AluSp SINE Alu 1 296 -17 23 0 0 0 chr3 148572423 148572446 -78952132 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 148572641 148572664 -78951914 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 148572753 148572776 -78951802 + GC_rich Low_complexity Low_complexity 1 23 0 283 209 104 0 chr3 148574689 148574882 -78949696 + (CGGGG)n Simple_repeat Simple_repeat 1 213 0 237 159 29 14 chr3 148578474 148578543 -78946035 + G-rich Low_complexity Low_complexity 3 72 0 21 36 0 0 chr3 148584495 148584523 -78940055 + GC_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 148584545 148584570 -78940008 + GC_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr3 148584907 148584945 -78939633 + GC_rich Low_complexity Low_complexity 1 38 0 206 341 143 0 chr3 148585706 148585797 -78938781 + MIR SINE MIR 108 211 -51 414 309 92 32 chr3 148588324 148588606 -78935972 + MER58B DNA MER1_type 43 341 0 201 159 0 0 chr3 148591242 148591286 -78933292 + G-rich Low_complexity Low_complexity 2 45 0 23 0 0 0 chr3 148595241 148595264 -78929314 + GC_rich Low_complexity Low_complexity 1 23 0 303 28 0 0 chr3 148596810 148596846 -78927732 + (TG)n Simple_repeat Simple_repeat 1 36 0 188 67 33 0 chr3 148597320 148597350 -78927228 + (TA)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr3 148597959 148597988 -78926590 + AT_rich Low_complexity Low_complexity 1 29 0 202 35 0 0 chr3 148598886 148598915 -78925663 - L2 LINE L2 -216 3056 3028 444 247 12 29 chr3 148598944 148599114 -78925464 + CT-rich Low_complexity Low_complexity 5 171 0 2252 89 16 0 chr3 148601234 148601361 -78923217 + AluSx SINE Alu 1 124 -188 2132 86 0 4 chr3 148601361 148601640 -78922938 + AluY SINE Alu 21 298 -13 2252 89 16 0 chr3 148601640 148601815 -78922763 + AluSx SINE Alu 124 308 -4 2334 68 0 7 chr3 148605160 148605456 -78919122 - AluY SINE Alu -17 294 1 27 0 0 0 chr3 148605466 148605493 -78919085 + AT_rich Low_complexity Low_complexity 1 27 0 2079 110 0 32 chr3 148605527 148605837 -78918741 - AluY SINE Alu -11 300 1 1189 211 32 26 chr3 148607196 148607508 -78917070 - MLT1A1 LTR MaLR -48 317 4 1940 110 52 0 chr3 148607532 148607823 -78916755 + AluSq SINE Alu 1 306 -7 1358 179 44 4 chr3 148607859 148608111 -78916467 + AluJb SINE Alu 27 288 -24 2090 88 27 7 chr3 148608125 148608419 -78916159 + AluY SINE Alu 1 300 -11 222 275 0 43 chr3 148608427 148608496 -78916082 + L2 LINE L2 1127 1192 -2122 377 293 60 0 chr3 148609368 148609547 -78915031 + L1MD1 LINE L1 5763 5967 -275 1582 149 0 71 chr3 148609565 148609721 -78914857 + AluJo SINE Alu 1 124 -188 2116 120 7 0 chr3 148609721 148610022 -78914556 + AluSq SINE Alu 5 307 -6 1582 149 0 71 chr3 148610022 148610187 -78914391 + AluJo SINE Alu 124 299 -13 2063 177 6 75 chr3 148610191 148610433 -78914145 + L1M4 LINE L1 5279 5463 -721 2014 93 24 17 chr3 148610433 148610724 -78913854 + AluY SINE Alu 1 293 -18 2063 177 6 75 chr3 148610724 148611028 -78913550 + L1M4 LINE L1 5463 5787 -397 295 312 48 0 chr3 148611059 148611184 -78913394 + MER3 DNA MER1_type 1 131 -78 851 144 0 14 chr3 148611207 148611346 -78913232 + AluJo SINE Alu 1 137 -175 565 239 68 15 chr3 148611641 148611846 -78912732 + L1MC5 LINE L1 7603 7818 -143 2181 122 0 3 chr3 148612216 148612528 -78912050 + AluSx SINE Alu 1 311 -1 2217 101 0 19 chr3 148612553 148612860 -78911718 + AluSx SINE Alu 1 301 -11 1022 151 6 0 chr3 148612866 148613032 -78911546 + AluSg/x SINE Alu 140 306 -6 502 157 249 4 chr3 148613349 148613499 -78911079 + L1PA16 LINE L1 5997 6150 -16 321 77 0 19 chr3 148613918 148613970 -78910608 + L1PA16 LINE L1 6115 6165 -1 1855 124 27 17 chr3 148614240 148614368 -78910210 + AluSx SINE Alu 1 126 -186 2352 93 0 0 chr3 148614368 148614669 -78909909 + AluSg SINE Alu 1 301 -9 1855 124 27 17 chr3 148614669 148614838 -78909740 + AluSx SINE Alu 126 301 -11 2230 78 7 0 chr3 148615667 148615960 -78908618 - AluSx SINE Alu -17 295 1 317 340 109 6 chr3 148616604 148616760 -78907818 + HAL1 LINE L1 3 174 -2333 427 331 140 26 chr3 148617131 148617403 -78907175 + HAL1 LINE L1 806 1108 -1399 252 216 51 57 chr3 148618376 148618552 -78906026 + (CCCCAG)n Simple_repeat Simple_repeat 3 177 0 211 225 39 77 chr3 148618694 148618876 -78905702 + (CCCCAG)n Simple_repeat Simple_repeat 3 177 0 257 225 62 38 chr3 148618933 148619093 -78905485 + (CCCCAG)n Simple_repeat Simple_repeat 1 164 0 231 159 145 0 chr3 148619418 148619487 -78905091 + L1MC4 LINE L1 6828 6906 -1136 204 311 0 17 chr3 148619724 148619904 -78904674 + (CCCA)n Simple_repeat Simple_repeat 4 180 0 356 295 156 19 chr3 148619984 148620276 -78904302 + L1MC4a LINE L1 7050 7421 -387 2240 112 0 10 chr3 148620276 148620589 -78903989 - AluSx SINE Alu -2 310 1 356 295 156 19 chr3 148620589 148620726 -78903852 + L1MC4a LINE L1 7421 7538 -270 2096 103 0 7 chr3 148620967 148621257 -78903321 + AluSc SINE Alu 1 288 -21 1291 228 45 75 chr3 148621545 148621902 -78902676 - MLT1C LTR MaLR -14 453 112 2315 91 0 0 chr3 148621902 148622198 -78902380 + AluY SINE Alu 1 296 -15 1291 228 45 75 chr3 148622198 148622304 -78902274 - MLT1C LTR MaLR -355 112 4 224 246 49 0 chr3 148622564 148622625 -78901953 - L2 LINE L2 -244 3069 3006 1103 192 24 52 chr3 148623629 148624017 -78900561 - MLT1C LTR MaLR -21 369 3 365 312 196 46 chr3 148624279 148624625 -78899953 - HAL1 LINE L1 -292 2215 1818 1547 127 0 0 chr3 148625257 148625477 -78899101 + AluSg/x SINE Alu 79 298 -12 3164 189 66 43 chr3 148625478 148625606 -78898972 + L1MC1 LINE L1 4648 4772 -1561 1259 205 110 0 chr3 148625606 148625869 -78898709 + AluJo SINE Alu 3 294 -18 3164 189 66 43 chr3 148625869 148626054 -78898524 + L1MC1 LINE L1 4772 4951 -1382 2124 127 0 0 chr3 148626054 148626346 -78898232 + AluSx SINE Alu 1 292 -20 3164 189 66 43 chr3 148626346 148626701 -78897877 + L1MC1 LINE L1 4951 5296 -1037 1456 123 5 9 chr3 148626701 148626921 -78897657 + AluSg/x SINE Alu 83 301 -9 2203 90 17 0 chr3 148626921 148627221 -78897357 + AluSq SINE Alu 1 305 -8 3164 189 66 43 chr3 148627221 148627280 -78897298 + L1MC1 LINE L1 5296 5352 -981 1822 114 95 0 chr3 148627280 148627553 -78897025 + AluSx SINE Alu 1 299 -13 2397 69 7 0 chr3 148627555 148627859 -78896719 + AluSp SINE Alu 3 308 -5 3164 189 66 43 chr3 148627859 148628601 -78895977 + L1MC1 LINE L1 5352 6257 -76 1685 134 0 4 chr3 148628617 148628864 -78895714 - AluSq SINE Alu -20 293 48 235 65 0 0 chr3 148628864 148628895 -78895683 - LTR13 LTR ERVK -2 1005 975 420 133 0 0 chr3 148628896 148628956 -78895622 - AluJ/FLAM SINE Alu -252 60 1 1518 127 0 25 chr3 148629080 148629317 -78895261 - AluJb SINE Alu -81 231 1 274 284 47 112 chr3 148629433 148629665 -78894913 + MIR SINE MIR 16 232 -30 2340 94 0 0 chr3 148629767 148630076 -78894502 - AluSc SINE Alu 0 309 1 703 93 28 0 chr3 148630937 148631045 -78893533 - HY1 scRNA scRNA -1 111 1 232 185 59 25 chr3 148631841 148631960 -78892618 + (CCG)n Simple_repeat Simple_repeat 1 123 0 2272 75 19 7 chr3 148633553 148633861 -78890717 + AluSq SINE Alu 1 312 -1 264 261 34 0 chr3 148634125 148634226 -78890352 - MIR SINE MIR -59 149 70 1029 175 137 0 chr3 148634488 148634750 -78889828 + L1MB5 LINE L1 5877 6174 0 2290 101 0 0 chr3 148634757 148635064 -78889514 + AluSg SINE Alu 1 307 -3 328 205 0 12 chr3 148635221 148635304 -78889274 - L1M4 LINE L1 -3541 2605 2524 2448 62 0 3 chr3 148635304 148635611 -78888967 - AluY SINE Alu -3 308 3 1863 222 83 54 chr3 148635613 148635650 -78888928 - L1M4 LINE L1 -945 5201 5167 1801 142 0 68 chr3 148635650 148635821 -78888757 - AluJo SINE Alu -10 302 121 207 0 0 0 chr3 148635821 148635844 -78888734 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2026 98 29 0 chr3 148635844 148636121 -78888457 - AluSp SINE Alu -28 285 1 2093 111 10 0 chr3 148636128 148636425 -78888153 - AluSp SINE Alu -13 300 1 1801 142 0 68 chr3 148636425 148636568 -78888010 - AluJo SINE Alu -196 116 1 1863 222 83 54 chr3 148636568 148636840 -78887738 - L1M4 LINE L1 -979 5167 4904 2438 72 3 0 chr3 148636840 148637147 -78887431 - AluY SINE Alu -3 308 1 1863 222 83 54 chr3 148637147 148637454 -78887124 - L1M4 LINE L1 -1242 4904 4607 2113 115 3 3 chr3 148637454 148637750 -78886828 - AluSx SINE Alu -15 297 2 2274 90 7 0 chr3 148637759 148638058 -78886520 - AluSp SINE Alu -12 301 1 1863 222 83 54 chr3 148638058 148638203 -78886375 - L1M4 LINE L1 -1546 4600 4406 201 74 0 0 chr3 148638310 148638337 -78886241 + (CA)n Simple_repeat Simple_repeat 1 27 0 1530 135 41 4 chr3 148638771 148639016 -78885562 + AluSx SINE Alu 1 254 -58 2070 125 16 0 chr3 148639859 148640164 -78884414 + AluSp SINE Alu 1 310 -3 2061 132 0 0 chr3 148641584 148641879 -78882699 - AluSx SINE Alu -16 296 2 2128 125 3 0 chr3 148641885 148642188 -78882390 - AluSx SINE Alu -8 304 1 1832 119 81 0 chr3 148643015 148643300 -78881278 + AluSg SINE Alu 1 308 -2 184 67 0 67 chr3 148643418 148643463 -78881115 + (CAAAAA)n Simple_repeat Simple_repeat 2 43 0 713 191 23 23 chr3 148643960 148644091 -78880487 + FLAM_C SINE Alu 3 133 0 2175 107 3 0 chr3 148644113 148644413 -78880165 + AluSx SINE Alu 1 301 -11 1488 169 0 8 chr3 148644426 148644680 -78879898 + AluSx SINE Alu 55 306 -6 2134 105 7 3 chr3 148644680 148644985 -78879593 + AluSx SINE Alu 1 306 -6 25 0 0 0 chr3 148645017 148645042 -78879536 + AT_rich Low_complexity Low_complexity 1 25 0 2142 86 10 10 chr3 148645052 148645342 -78879236 + AluSp SINE Alu 1 290 -23 1266 178 53 76 chr3 148645351 148645573 -78879005 + AluJo SINE Alu 2 217 -95 1685 123 100 0 chr3 148645573 148645834 -78878744 + AluSg SINE Alu 1 287 -23 1266 178 53 76 chr3 148645834 148645915 -78878663 + AluJo SINE Alu 217 298 -14 2137 110 0 0 chr3 148645983 148646275 -78878303 - AluY SINE Alu -19 292 1 1582 172 46 11 chr3 148646285 148646570 -78878008 - AluJo SINE Alu -17 295 1 968 244 82 59 chr3 148647678 148648056 -78876522 - MER119 DNA MER1_type -64 519 128 1506 171 23 37 chr3 148648056 148648355 -78876223 - AluJo SINE Alu -17 295 1 968 244 82 59 chr3 148648355 148648415 -78876163 - MER119 DNA MER1_type -455 128 71 356 224 10 31 chr3 148648461 148648559 -78876019 + MER105 DNA DNA 66 161 -43 2304 81 3 3 chr3 148648625 148648933 -78875645 - AluSp SINE Alu 0 313 6 2126 131 0 0 chr3 148649116 148649422 -78875156 + AluSx SINE Alu 1 306 -6 2175 91 34 0 chr3 148650456 148650752 -78873826 + AluSg SINE Alu 1 306 -4 735 205 117 12 chr3 148650837 148651008 -78873570 - MER5A DNA MER1_type 0 189 1 703 163 7 71 chr3 148651278 148651419 -78873159 + AluJo SINE Alu 5 136 -176 2161 120 3 0 chr3 148652419 148652720 -78871858 - AluSp SINE Alu -9 304 3 941 188 33 0 chr3 148653306 148653487 -78871091 + AluJb SINE Alu 103 289 -23 1724 150 20 10 chr3 148653497 148653791 -78870787 + AluSx SINE Alu 1 297 -15 1552 136 25 74 chr3 148654021 148654344 -78870234 + AluSx SINE Alu 1 307 -5 1781 107 80 50 chr3 148654348 148654433 -78870145 + AluSx SINE Alu 3 84 -228 2796 13 0 0 chr3 148654433 148654746 -78869832 + AluYb8 SINE Alu 1 313 -5 1781 107 80 50 chr3 148654746 148654959 -78869619 + AluSx SINE Alu 84 310 -2 1757 143 10 31 chr3 148655111 148655250 -78869328 + AluSg SINE Alu 1 141 -169 2298 99 0 0 chr3 148655250 148655552 -78869026 + AluSg SINE Alu 6 307 -3 1757 143 10 31 chr3 148655552 148655705 -78868873 + AluSg SINE Alu 141 287 -23 220 260 61 21 chr3 148656286 148656430 -78868148 - L2 LINE L2 -363 2951 2732 1478 86 15 0 chr3 148656508 148656706 -78867872 - AluSp SINE Alu -6 307 107 3319 90 96 29 chr3 148656706 148657060 -78867518 + LTR14 LTR ERVK 2 402 -146 2318 71 10 0 chr3 148657060 148657357 -78867221 - AluY SINE Alu -11 300 1 3319 90 96 29 chr3 148657357 148657515 -78867063 + LTR14 LTR ERVK 402 548 0 839 97 0 0 chr3 148657515 148657628 -78866950 - AluSp SINE Alu -200 113 1 588 287 142 14 chr3 148657630 148657877 -78866701 + L2 LINE L2 2192 2503 -811 2257 119 112 52 chr3 148657877 148658217 -78866361 - MER4C LTR ERV1 0 465 92 2278 100 0 3 chr3 148658217 148658526 -78866052 + AluSx SINE Alu 1 308 -4 2257 119 112 52 chr3 148658526 148658623 -78865955 - MER4C LTR ERV1 -373 92 2 588 287 142 14 chr3 148658623 148658741 -78865837 + L2 LINE L2 2503 2604 -710 255 196 41 31 chr3 148659629 148659726 -78864852 + (CAGGG)n Simple_repeat Simple_repeat 4 101 0 27 49 0 0 chr3 148659799 148659840 -78864738 + GC_rich Low_complexity Low_complexity 1 41 0 22 0 0 0 chr3 148660038 148660060 -78864518 + GC_rich Low_complexity Low_complexity 1 22 0 264 212 0 30 chr3 148660361 148660427 -78864151 + MLT1F1 LTR MaLR 504 567 0 327 133 13 67 chr3 148661043 148661065 -78863513 + MER49 LTR ERV1 1 23 -900 2037 108 35 0 chr3 148661065 148661352 -78863226 + AluSp SINE Alu 1 297 -16 327 133 13 67 chr3 148661352 148661404 -78863174 + MER49 LTR ERV1 23 71 -852 * 934 125 54 6 chr3 148661403 148661571 -78863007 + MER49 LTR ERV1 221 396 -527 667 181 22 58 chr3 148661572 148661710 -78862868 + AluJo/FLAM SINE Alu 1 133 -179 1912 149 3 3 chr3 148661710 148662005 -78862573 + AluJo SINE Alu 1 295 -17 1619 124 45 30 chr3 148662010 148662416 -78862162 + MER49 LTR ERV1 391 859 -64 751 90 20 0 chr3 148662422 148662522 -78862056 - AluSg/x SINE Alu -20 290 189 216 254 18 0 chr3 148662606 148662661 -78861917 + L2 LINE L2 3209 3264 -8 474 171 51 0 chr3 148666487 148666604 -78857974 + L1MC4 LINE L1 6889 7011 -1031 1775 78 130 11 chr3 148666722 148666992 -78857586 + AluSc SINE Alu 1 302 -7 21 0 0 0 chr3 148668317 148668338 -78856240 + GC_rich Low_complexity Low_complexity 1 21 0 29 0 0 0 chr3 148668373 148668402 -78856176 + GC_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr3 148668419 148668444 -78856134 + GC_rich Low_complexity Low_complexity 1 25 0 226 149 0 21 chr3 148669058 148669105 -78855473 + (CCCCG)n Simple_repeat Simple_repeat 3 48 0 191 262 0 0 chr3 148669722 148669764 -78854814 + L2 LINE L2 2430 2471 -843 2258 76 0 13 chr3 148671331 148671634 -78852944 - AluY SINE Alu -12 299 1 1373 70 0 16 chr3 148671742 148671928 -78852650 - AluY SINE Alu -2 309 127 977 155 7 0 chr3 148672134 148672289 -78852289 - AluJb SINE Alu -23 289 134 2284 82 7 3 chr3 148672289 148672594 -78851984 - AluSp SINE Alu -7 306 1 665 215 20 51 chr3 148674110 148674210 -78850368 + MER54B LTR ERVL 494 587 -206 2149 103 10 13 chr3 148674210 148674521 -78850057 + AluSq SINE Alu 2 311 -2 665 215 20 51 chr3 148674521 148674615 -78849963 + MER54B LTR ERVL 587 682 -111 717 191 106 11 chr3 148674828 148675016 -78849562 + MER54A LTR ERVL 669 874 -27 6371 112 52 20 chr3 148676590 148677358 -78847220 - LTR13 LTR ERVK 0 1007 200 2249 72 10 7 chr3 148677358 148677662 -78846916 - AluY SINE Alu -5 306 2 6371 112 52 20 chr3 148677662 148677869 -78846709 - LTR13 LTR ERVK -807 200 1 2038 116 14 0 chr3 148678967 148679260 -78845318 - AluSx SINE Alu -15 297 1 1565 267 107 2 chr3 148680031 148680612 -78843966 - L1MB7 LINE L1 -265 5919 5278 1575 173 35 35 chr3 148680700 148681012 -78843566 + AluJo SINE Alu 1 312 0 2288 105 3 0 chr3 148681022 148681327 -78843251 + AluSx SINE Alu 1 306 -6 2183 118 0 0 chr3 148681518 148681814 -78842764 - AluSx SINE Alu -16 296 1 536 186 31 0 chr3 148681834 148681931 -78842647 + AluJo SINE Alu 38 137 -175 324 206 0 0 chr3 148681932 148682000 -78842578 - L1MB7 LINE L1 -1116 5030 4963 1114 175 113 0 chr3 148682002 148682231 -78842347 - AluJb SINE Alu -16 296 42 324 233 186 0 chr3 148682300 148682429 -78842149 + MER20 DNA MER1_type 2 154 -65 2152 117 10 0 chr3 148683466 148683775 -78840803 + AluSx SINE Alu 1 312 0 672 238 58 0 chr3 148683777 148683949 -78840629 + MER58A DNA MER1_type 2 183 -41 2029 126 3 3 chr3 148683949 148684250 -78840328 + AluSx SINE Alu 1 301 -11 2592 150 38 10 chr3 148685855 148686348 -78838230 - LTR10A LTR ERV1 -21 612 58 2123 94 3 7 chr3 148686348 148686647 -78837931 + AluY SINE Alu 1 298 -13 2592 150 38 10 chr3 148686647 148686707 -78837871 - LTR10A LTR ERV1 -575 58 1 273 206 0 0 chr3 148687118 148687215 -78837363 + C-rich Low_complexity Low_complexity 3 99 0 957 178 0 12 chr3 148689270 148689439 -78835139 + AluJb SINE Alu 141 307 -5 1026 179 11 5 chr3 148689852 148689866 -78834712 + AluSg/x SINE Alu 118 130 -179 1902 115 22 0 chr3 148689866 148690136 -78834442 + AluSx SINE Alu 27 302 -10 1026 179 11 5 chr3 148690136 148690305 -78834273 + AluSg/x SINE Alu 130 302 -7 1982 112 22 0 chr3 148690312 148690590 -78833988 + AluSc SINE Alu 14 297 -12 2302 101 0 0 chr3 148690592 148690898 -78833680 + AluSg SINE Alu 3 308 -2 2287 95 0 0 chr3 148793663 148793959 -78730619 - AluSc SINE Alu -13 296 1 902 209 0 11 chr3 148794067 148794244 -78730334 - FAM SINE Alu -5 44 1 428 198 50 0 chr3 148794300 148794401 -78730177 - L1ME2 LINE L1 -9 6155 6050 579 168 39 9 chr3 148794564 148794715 -78729863 + L1ME3 LINE L1 5594 5750 -412 1391 198 99 18 chr3 148794812 148795195 -78729383 - MER110A LTR ERV1 -54 414 1 1235 182 39 105 chr3 148795198 148795637 -78728941 + L1ME3 LINE L1 5752 6161 -1 1394 118 5 5 chr3 148795793 148795988 -78728590 + AluSg/x SINE Alu 103 297 -15 427 156 98 122 chr3 148796085 148796290 -78728288 - LTR37A LTR ERV1 -2 424 225 21 43 0 22 chr3 148797237 148797255 -78727323 + AT_rich Low_complexity Low_complexity 1 18 -27 2120 91 33 0 chr3 148797255 148797529 -78727049 - AluSg SINE Alu -27 283 1 21 43 0 22 chr3 148797529 148797556 -78727022 + AT_rich Low_complexity Low_complexity 18 45 0 1522 200 49 94 chr3 148797859 148798558 -78726020 - L1MC5 LINE L1 -436 7525 6859 21 57 0 0 chr3 148799060 148799095 -78725483 + AT_rich Low_complexity Low_complexity 1 35 0 1799 161 20 0 chr3 148799462 148799754 -78724824 - AluJb SINE Alu -14 298 1 271 285 108 13 chr3 148799802 148799960 -78724618 - L1ME LINE L1 -401 5769 5597 1997 215 8 34 chr3 148800005 148800538 -78724040 - L1MA9 LINE L1 -38 6274 5762 22 56 0 0 chr3 148800544 148800580 -78723998 + AT_rich Low_complexity Low_complexity 1 36 0 5001 155 28 10 chr3 148800609 148802247 -78722331 - L1MA5 LINE L1 -84 6216 4551 1248 216 52 57 chr3 148802238 148802380 -78722198 - L1MA9 LINE L1 -560 5752 5611 * 1946 150 14 7 chr3 148802380 148802673 -78721905 - AluSx SINE Alu -17 295 1 1248 216 52 57 chr3 148802673 148802933 -78721645 - L1MA9 LINE L1 -701 5611 5352 629 277 108 9 chr3 148803465 148803696 -78720882 + MIR SINE MIR 9 262 0 233 338 90 68 chr3 148803922 148804156 -78720422 - L2 LINE L2 0 3272 3034 1777 28 9 5 chr3 148804737 148804950 -78719628 + AluY SINE Alu 93 306 -5 477 0 0 0 chr3 148807664 148807717 -78716861 + (TG)n Simple_repeat Simple_repeat 2 54 0 2235 114 0 0 chr3 148807717 148808014 -78716564 - AluSx SINE Alu -15 297 1 20332 155 28 18 chr3 148808424 148811633 -78712945 - L1MA3 LINE L1 0 7724 4549 2148 116 7 3 chr3 148811633 148811936 -78712642 - AluSg SINE Alu -6 304 1 20332 155 28 18 chr3 148811936 148813574 -78711004 - L1MA3 LINE L1 -3175 4549 2929 2330 90 0 3 chr3 148813574 148813873 -78710705 + AluY SINE Alu 1 298 -13 20332 155 28 18 chr3 148813873 148816651 -78707927 - L1MA3 LINE L1 -4795 2929 27 24 32 0 0 chr3 148817164 148817195 -78707383 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr3 148817826 148817849 -78706729 + AT_rich Low_complexity Low_complexity 1 23 0 482 293 126 18 chr3 148817889 148818111 -78706467 - MIR SINE MIR -14 248 3 2056 124 6 16 chr3 148818804 148819118 -78705460 - AluSx SINE Alu -1 311 1 795 102 0 0 chr3 148820193 148820330 -78704248 + (TG)n Simple_repeat Simple_repeat 2 138 0 580 137 26 43 chr3 148820331 148820448 -78704130 - MER20 DNA MER1_type -61 158 44 183 131 16 33 chr3 148820549 148820610 -78703968 + (TA)n Simple_repeat Simple_repeat 2 61 0 1039 237 182 40 chr3 148820612 148821149 -78703429 + MLT1G3 LTR MaLR 27 530 0 22 70 0 0 chr3 148821180 148821223 -78703355 + AT_rich Low_complexity Low_complexity 1 43 0 241 236 187 16 chr3 148821766 148821889 -78702689 - MLT1L LTR MaLR -18 597 454 2268 100 10 3 chr3 148821891 148822201 -78702377 - AluSp SINE Alu -1 312 1 1258 137 232 0 chr3 148822430 148822714 -78701864 + Tigger3(Golem) DNA MER2_type 10 2156 -873 228 315 33 22 chr3 148822721 148822813 -78701765 + MIR SINE MIR 54 146 -62 2098 124 0 0 chr3 148822916 148823198 -78701380 + AluSx SINE Alu 1 282 -30 391 333 56 0 chr3 148823218 148823380 -78701198 - L2 LINE L2 -989 2325 2155 1873 168 3 13 chr3 148823509 148823824 -78700754 + AluJb SINE Alu 1 312 0 2188 123 0 0 chr3 148824044 148824355 -78700223 - AluSx SINE Alu 0 311 1 21 0 0 0 chr3 148824415 148824436 -78700142 + AT_rich Low_complexity Low_complexity 1 21 0 313 355 22 35 chr3 148824565 148824793 -78699785 + L2 LINE L2 2835 3059 -213 443 256 144 32 chr3 148825123 148825413 -78699165 - L1MC4 LINE L1 -294 7748 7335 1013 203 75 0 chr3 148825413 148825488 -78699090 - MER33 DNA MER1_type -2265 320 252 2175 87 45 0 chr3 148825488 148825777 -78698801 + AluY SINE Alu 1 302 -9 1013 203 75 0 chr3 148825777 148825996 -78698582 - MER33 DNA MER1_type -2333 252 4 443 256 144 32 chr3 148825996 148826025 -78698553 - L1MC4 LINE L1 -707 7335 7311 2162 129 10 6 chr3 148826038 148826349 -78698229 + AluSx SINE Alu 1 312 0 857 267 47 19 chr3 148826370 148826729 -78697849 - L1MC4 LINE L1 -567 7475 7107 331 266 147 0 chr3 148827031 148827140 -78697438 - MLT1J2 LTR MaLR -124 326 202 200 173 12 49 chr3 148827514 148827595 -78696983 + GA-rich Low_complexity Low_complexity 3 80 0 704 337 44 70 chr3 148827928 148828531 -78696047 - L2 LINE L2 0 3272 2686 323 340 42 11 chr3 148828576 148828767 -78695811 + L1MB8 LINE L1 4773 4969 -1177 252 262 64 116 chr3 148828893 148829160 -78695418 - L2 LINE L2 -715 2599 2347 3300 163 72 23 chr3 148829160 148830024 -78694554 + L1MB8 LINE L1 5155 6063 -115 1795 88 4 34 chr3 148830030 148830167 -78694411 + AluSc SINE Alu 1 128 -181 2238 31 59 21 chr3 148830167 148830457 -78694121 + AluY SINE Alu 1 301 -10 1795 88 4 34 chr3 148830457 148830581 -78693997 + AluSc SINE Alu 128 254 -55 2222 81 10 16 chr3 148831761 148832069 -78692509 - AluSg SINE Alu -4 306 1 203 299 46 35 chr3 148832123 148832210 -78692368 + L2 LINE L2 3170 3257 -15 313 328 109 44 chr3 148833764 148833947 -78690631 - L2 LINE L2 -212 3060 2866 752 294 73 53 chr3 148833967 148834366 -78690212 - L2 LINE L2 -614 2700 2288 1200 234 32 44 chr3 148834366 148834682 -78689896 - AluJo SINE Alu 0 312 1 752 294 73 53 chr3 148834682 148834772 -78689806 - L2 LINE L2 -1026 2288 2201 819 181 122 16 chr3 148835717 148835905 -78688673 + MER6B DNA MER2_type 1 208 -2 758 231 141 29 chr3 148835962 148836239 -78688339 - L2 LINE L2 -1 3312 3005 1572 171 61 6 chr3 148836359 148836703 -78687875 - MLT1B LTR MaLR 0 390 28 833 247 65 63 chr3 148836852 148837051 -78687527 - L1MC4 LINE L1 -17 8025 7828 1955 128 33 10 chr3 148837051 148837356 -78687222 - AluSx SINE Alu 0 312 1 833 247 65 63 chr3 148837356 148837630 -78686948 - L1MC4 LINE L1 -214 7828 7551 518 234 92 0 chr3 148837664 148837848 -78686730 - L1MD3 LINE L1 -11 7984 7784 1569 223 95 74 chr3 148837875 148838144 -78686434 - L1MC4 LINE L1 -498 7544 7282 1959 154 3 3 chr3 148838144 148838436 -78686142 + AluJb SINE Alu 6 297 -15 2298 64 3 0 chr3 148838436 148838750 -78685828 + AluY SINE Alu 1 315 0 1569 223 95 74 chr3 148838750 148839311 -78685267 - L1MC4 LINE L1 -759 7283 6695 258 193 0 0 chr3 148839323 148839380 -78685198 - L1M4 LINE L1 -3463 2683 2627 786 153 33 20 chr3 148839440 148839590 -78684988 - Tigger5 DNA MER2_type -3 2320 2169 875 249 40 88 chr3 148839704 148839841 -78684737 - L2 LINE L2 -10 3303 3161 1779 169 49 3 chr3 148839841 148840123 -78684455 + MER47A DNA MER2_type 2 304 -2019 2226 123 0 0 chr3 148840123 148840424 -78684154 - AluSx SINE Alu -2 310 10 1779 169 49 3 chr3 148840424 148840490 -78684088 + MER47A DNA MER2_type 304 366 0 875 249 40 88 chr3 148840490 148840749 -78683829 - L2 LINE L2 -152 3161 2926 442 280 32 0 chr3 148840921 148841046 -78683532 + L2 LINE L2 3130 3258 -55 1977 130 0 50 chr3 148841196 148841524 -78683054 - AluSx SINE Alu 0 313 1 23 33 0 0 chr3 148845003 148845033 -78679545 + AT_rich Low_complexity Low_complexity 1 30 0 203 167 42 21 chr3 148845412 148845460 -78679118 + (CAAAT)n Simple_repeat Simple_repeat 1 49 0 325 264 11 11 chr3 148845683 148845770 -78678808 - MIR SINE MIR -85 177 91 711 183 56 0 chr3 148845936 148846062 -78678516 - AluJb SINE Alu -49 263 131 299 274 162 26 chr3 148846977 148847094 -78677484 - MIR SINE MIR -60 148 16 27 0 0 0 chr3 148847225 148847252 -78677326 + AT_rich Low_complexity Low_complexity 1 27 0 303 333 111 58 chr3 148848532 148848739 -78675839 - L2 LINE L2 -5 3267 3050 252 86 0 0 chr3 148849185 148849220 -78675358 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 241 299 75 8 chr3 148849617 148849751 -78674827 + L1ME LINE L1 5754 5896 -225 2204 70 3 13 chr3 148850387 148850685 -78673893 + AluY SINE Alu 1 295 -16 41 0 0 0 chr3 148851143 148851184 -78673394 + AT_rich Low_complexity Low_complexity 1 41 0 269 239 109 0 chr3 148851215 148851307 -78673271 - L1ME4a LINE L1 -40 6081 5980 700 256 123 0 chr3 148851365 148851584 -78672994 + MIR SINE MIR 17 262 0 400 258 89 59 chr3 148851608 148851945 -78672633 - L1ME4a LINE L1 -238 5883 5537 605 314 83 63 chr3 148852059 148852830 -78671748 - L1ME4a LINE L1 -747 5399 4590 402 250 13 51 chr3 148852952 148853108 -78671470 - HAL1 LINE L1 -113 2394 2245 276 232 0 0 chr3 148853425 148853494 -78671084 - HAL1 LINE L1 -361 2146 2078 826 223 103 38 chr3 148853874 148854193 -78670385 - HAL1 LINE L1 -815 1692 1353 192 231 0 0 chr3 148854618 148854670 -78669908 + (TG)n Simple_repeat Simple_repeat 1 52 0 21 0 0 0 chr3 148854796 148854817 -78669761 + AT_rich Low_complexity Low_complexity 1 21 0 1587 171 6 32 chr3 148854817 148855133 -78669445 - AluSg SINE Alu 0 310 3 1708 83 0 0 chr3 148855643 148855848 -78668730 - AluSc SINE Alu -104 205 1 803 223 66 0 chr3 148855857 148856054 -78668524 - MLT2B1 LTR ERVL -310 210 1 2150 174 13 10 chr3 148856251 148856642 -78667936 + MSTD LTR MaLR 5 396 0 1237 246 58 66 chr3 148857172 148857314 -78667264 + L1ME3A LINE L1 5564 5706 -464 4842 100 32 0 chr3 148857314 148858032 -78666546 - L1PA13 LINE L1 0 6163 5423 1237 246 58 66 chr3 148858032 148858463 -78666115 + L1ME3A LINE L1 5706 6132 -38 * 1347 218 3 3 chr3 148858459 148858753 -78665825 + L1M4 LINE L1 4647 4940 -1206 2330 98 0 0 chr3 148859606 148859913 -78664665 + AluY SINE Alu 1 307 -4 180 217 0 0 chr3 148860542 148860588 -78663990 + (GGGTG)n Simple_repeat Simple_repeat 4 49 0 2033 124 0 3 chr3 148861589 148861872 -78662706 + AluSx SINE Alu 1 282 -30 246 62 0 0 chr3 148861882 148861914 -78662664 + (TAAA)n Simple_repeat Simple_repeat 2 33 0 2090 108 6 32 chr3 148862101 148862416 -78662162 - AluSg SINE Alu -3 307 1 3142 164 53 27 chr3 148863144 148863836 -78660742 - L1MA9 LINE L1 0 6312 5600 2567 36 0 7 chr3 148863836 148864137 -78660441 - AluY SINE Alu -12 299 1 1118 160 14 19 chr3 148864146 148864351 -78660227 - AluJb SINE Alu -22 290 85 36512 33 1 0 chr3 148864456 148869626 -78654952 + L1PA2 LINE L1 973 6145 -10 6359 75 18 12 chr3 148873970 148874361 -78650217 + L1PA8A LINE L1 5089 5476 -655 2261 103 7 0 chr3 148874361 148874663 -78649915 + AluSx SINE Alu 1 304 -8 6359 75 18 12 chr3 148874663 148875280 -78649298 + L1PA8A LINE L1 5476 6104 -27 281 167 62 0 chr3 148875330 148875378 -78649200 + Alu SINE Alu 1 51 -249 2092 130 0 3 chr3 148875813 148876112 -78648466 + AluSg SINE Alu 1 298 -12 562 330 46 12 chr3 148876690 148876863 -78647715 - MIR SINE MIR -78 184 6 2205 95 16 7 chr3 148877093 148877397 -78647181 - AluSp SINE Alu -5 308 2 967 243 233 44 chr3 148877978 148878532 -78646046 - L1MEc LINE L1 -5602 794 102 303 71 0 0 chr3 148878532 148878574 -78646004 + (TG)n Simple_repeat Simple_repeat 2 43 0 967 243 233 44 chr3 148878574 148878658 -78645920 - L1MEc LINE L1 -6294 102 35 369 211 0 90 chr3 148878809 148878965 -78645613 - L1M4 LINE L1 -1439 4707 4566 806 259 91 87 chr3 148878970 148879708 -78644870 - L1M4 LINE L1 -1736 4410 3670 2124 135 34 0 chr3 148879748 148880097 -78644481 - L1MB7 LINE L1 -16 6168 5808 329 242 236 39 chr3 148880549 148880727 -78643851 - MIR SINE MIR -17 245 33 21 0 0 0 chr3 148881561 148881582 -78642996 + AT_rich Low_complexity Low_complexity 1 21 0 302 236 243 7 chr3 148882199 148882339 -78642239 + L1ME4a LINE L1 5257 5429 -2379 2152 137 11 6 chr3 148883253 148883617 -78640961 + MER47A DNA MER2_type 1 366 0 2103 138 0 0 chr3 148884654 148884978 -78639600 + AluSx SINE Alu 1 312 0 1665 239 96 27 chr3 148886091 148886898 -78637680 - L2 LINE L2 0 3313 2456 1580 161 22 39 chr3 148887751 148888062 -78636516 - AluJo SINE Alu -6 306 1 446 298 15 45 chr3 148888175 148888373 -78636205 - L1ME2 LINE L1 -10 6154 5963 2119 106 10 3 chr3 148888391 148888684 -78635894 - AluSx SINE Alu -17 295 1 277 234 22 59 chr3 148889925 148890159 -78634419 + L1ME4a LINE L1 5519 5777 -370 3981 231 82 18 chr3 148890206 148891240 -78633338 + L1MB7 LINE L1 16 1115 -5427 3237 234 74 21 chr3 148891243 148892377 -78632201 + L1MB7 LINE L1 1168 2458 -4188 10640 210 62 22 chr3 148892388 148892547 -78632031 + L1MB7 LINE L1 2670 2821 -3861 2146 105 7 13 chr3 148892547 148892851 -78631727 + AluSx SINE Alu 7 308 -4 10640 210 62 22 chr3 148892851 148894044 -78630534 + L1MB7 LINE L1 2821 3965 -2717 2099 208 70 30 chr3 148894044 148894573 -78630005 - MER44D DNA MER2_type 0 605 1 10640 210 62 22 chr3 148894573 148897072 -78627506 + L1MB7 LINE L1 3965 6664 -18 2163 179 48 28 chr3 148897223 148897726 -78626852 + L1MB7 LINE L1 5665 6177 -7 2366 104 0 3 chr3 148897740 148898047 -78626531 + AluY SINE Alu 1 306 -5 300 215 254 17 chr3 148898063 148898240 -78626338 + L1ME4a LINE L1 5892 6110 -11 364 287 76 19 chr3 148898503 148898660 -78625918 - MIR SINE MIR -44 218 53 1481 113 39 31 chr3 148898791 148899020 -78625558 + AluJb SINE Alu 73 303 -9 207 0 0 0 chr3 148899557 148899580 -78624998 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 218 377 0 0 chr3 148900088 148900149 -78624429 - L2 LINE L2 -108 3164 3104 195 42 0 0 chr3 148900363 148900387 -78624191 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 522 225 134 0 chr3 148900992 148901134 -78623444 + MER58C DNA MER1_type 55 215 0 400 227 0 0 chr3 148901255 148901352 -78623226 + L1ME1 LINE L1 5776 5872 -294 4856 194 157 49 chr3 148901354 148902560 -78622018 + L1MD3 LINE L1 6135 7570 -425 1686 159 80 15 chr3 148902560 148902899 -78621679 + MER46B DNA MER2_type 1 236 0 4856 194 157 49 chr3 148902899 148903353 -78621225 + L1MD3 LINE L1 7570 7974 -21 346 235 160 8 chr3 148904071 148904190 -78620388 + MIR SINE MIR 89 225 -37 669 231 20 41 chr3 148904301 148904496 -78620082 - L1ME LINE L1 -355 5811 5621 1180 140 121 15 chr3 148904507 148904779 -78619799 - L1MA7 LINE L1 -1 6290 5990 321 295 102 24 chr3 148906073 148906239 -78618339 + MIR SINE MIR 84 262 0 1613 239 207 47 chr3 148906305 148906987 -78617591 + L2 LINE L2 1869 2659 -655 1035 207 105 7 chr3 148907093 148907378 -78617200 - MLT1D LTR MaLR -192 313 1 274 192 117 75 chr3 148907472 148907592 -78616986 + L2 LINE L2 2832 2956 -357 * 428 286 48 20 chr3 148907565 148907712 -78616866 + L2 LINE L2 3163 3313 0 621 230 88 14 chr3 148909062 148909210 -78615368 - MIR SINE MIR -87 175 17 2212 73 49 0 chr3 148909368 148909654 -78614924 - AluSc SINE Alu -9 300 1 22 35 0 0 chr3 148910149 148910178 -78614400 + AT_rich Low_complexity Low_complexity 1 29 0 262 323 31 21 chr3 148910630 148910726 -78613852 - MIR3 SINE MIR -97 111 15 1881 148 45 6 chr3 148911236 148911567 -78613011 + MER2 DNA MER2_type 1 344 0 457 271 122 63 chr3 148914510 148914813 -78609765 + L2 LINE L2 2988 3308 -5 671 165 200 6 chr3 148915090 148915260 -78609318 + MER3 DNA MER1_type 6 208 -1 280 267 105 9 chr3 148915355 148915460 -78609118 + MIR SINE MIR 77 191 -71 1827 148 4 0 chr3 148915486 148915764 -78608814 - AluJo SINE Alu -23 289 11 1447 132 4 9 chr3 148916242 148916470 -78608108 - AluSg/x SINE Alu -1 311 85 1295 76 0 0 chr3 148916585 148916743 -78607835 + AluSg/x SINE Alu 138 295 -15 305 231 261 0 chr3 148917915 148918049 -78606529 - MER45 DNA AcHobo 0 1581 1413 650 251 93 50 chr3 148918113 148918170 -78606408 - MER45C DNA AcHobo -338 615 562 1366 134 60 0 chr3 148918170 148918386 -78606192 + MER30 DNA MER1_type 2 230 0 650 251 93 50 chr3 148918386 148918793 -78605785 - MER45C DNA AcHobo -391 562 38 21 0 0 0 chr3 148919427 148919448 -78605130 + AT_rich Low_complexity Low_complexity 1 21 0 907 259 56 83 chr3 148919570 148919749 -78604829 - L1MEd LINE L1 -3140 2989 2807 2096 118 7 0 chr3 148919749 148920036 -78604542 - AluSx SINE Alu -23 289 1 907 259 56 83 chr3 148920036 148920658 -78603920 - L1MEd LINE L1 -3322 2807 2211 2359 84 0 3 chr3 148920658 148920954 -78603624 - AluSq SINE Alu -18 295 1 907 259 56 83 chr3 148920954 148921028 -78603550 - L1MEd LINE L1 -3918 2211 2137 26 0 0 0 chr3 148921127 148921153 -78603425 + AT_rich Low_complexity Low_complexity 1 26 0 24 53 0 0 chr3 148921448 148921486 -78603092 + AT_rich Low_complexity Low_complexity 1 38 0 2130 121 0 7 chr3 148921610 148921907 -78602671 + AluSx SINE Alu 1 295 -17 318 251 71 52 chr3 148922298 148922509 -78602069 - L1MEd LINE L1 -4886 1233 1019 679 281 45 35 chr3 148922723 148923804 -78600774 - L1MC4 LINE L1 -152 7890 6741 219 281 0 18 chr3 148923958 148924015 -78600563 + GA-rich Low_complexity Low_complexity 1 56 0 293 244 12 23 chr3 148925088 148925174 -78599404 + L2 LINE L2 3226 3310 -3 520 284 155 0 chr3 148925735 148925883 -78598695 - MER5A DNA MER1_type -1 188 18 244 257 124 9 chr3 148928207 148928312 -78596266 - MIR3 SINE MIR -8 200 84 479 234 88 36 chr3 148928375 148928562 -78596016 + MIR3 SINE MIR 4 201 -7 531 284 131 0 chr3 148929456 148929639 -78594939 + MIR SINE MIR 26 232 -30 205 260 0 0 chr3 148929694 148929744 -78594834 + MIR SINE MIR 211 260 -2 518 213 207 6 chr3 148930608 148930772 -78593806 + MIR SINE MIR 23 219 -43 284 226 44 31 chr3 148930825 148930917 -78593661 - MIR SINE MIR -53 155 86 785 214 183 34 chr3 148931448 148931550 -78593028 + MER57B LTR ERV1 1 86 -348 216 0 0 0 chr3 148931550 148931574 -78593004 + (TTG)n Simple_repeat Simple_repeat 2 25 0 785 214 183 34 chr3 148931574 148931791 -78592787 + MER57B LTR ERV1 86 368 -66 3927 159 90 53 chr3 148931791 148933414 -78591164 + MER52A LTR ERV1 1 1755 0 266 213 0 0 chr3 148933414 148933475 -78591103 + MER57A LTR ERV1 334 394 -9 724 251 37 5 chr3 148933482 148933673 -78590905 + MER57A-int LTR ERV1 3 199 -7338 2179 163 26 43 chr3 148934033 148934498 -78590080 + LTR8A LTR ERV1 271 727 0 216 253 84 63 chr3 148934865 148934960 -78589618 - MIR3 SINE MIR -7 201 105 363 226 29 59 chr3 148936600 148936702 -78587876 + L2 LINE L2 3210 3308 -5 2466 82 0 3 chr3 148937716 148938022 -78586556 - AluSc SINE Alu -4 305 1 286 270 117 9 chr3 148938033 148938144 -78586434 - MIR SINE MIR -15 247 125 296 335 137 30 chr3 148938182 148938510 -78586068 - L3b LINE CR1 -8 1575 1213 2184 85 41 0 chr3 148938533 148938827 -78585751 - AluY SINE Alu -5 306 1 305 281 59 27 chr3 148939244 148939362 -78585216 + MIR SINE MIR 6 134 -74 916 249 3 25 chr3 148940573 148940829 -78583749 + MIR SINE MIR 15 259 -3 583 271 92 74 chr3 148942173 148942582 -78581996 + L2 LINE L2 2579 2979 -334 2265 89 3 3 chr3 148942582 148942874 -78581704 - AluSg SINE Alu -18 292 1 583 271 92 74 chr3 148942874 148943006 -78581572 + L2 LINE L2 2979 3107 -206 357 48 0 65 chr3 148943006 148943068 -78581510 - L1PA2 LINE L1 0 6155 6098 583 271 92 74 chr3 148943068 148943255 -78581323 + L2 LINE L2 3107 3313 0 1657 164 78 0 chr3 148943591 148943859 -78580719 + AluJb SINE Alu 1 289 -23 22 56 0 0 chr3 148943917 148943953 -78580625 + AT_rich Low_complexity Low_complexity 1 36 0 231 206 11 22 chr3 148944555 148944647 -78579931 + (TA)n Simple_repeat Simple_repeat 1 91 0 1050 146 88 0 chr3 148944704 148944896 -78579682 - MER3 DNA MER1_type 0 209 1 285 188 9 116 chr3 148944896 148945008 -78579570 + MER69 DNA AcHobo 38 137 -2389 387 0 0 0 chr3 148946882 148946925 -78577653 + (CA)n Simple_repeat Simple_repeat 2 44 0 21 0 0 0 chr3 148947580 148947601 -78576977 + AT_rich Low_complexity Low_complexity 1 21 0 362 275 139 10 chr3 148947634 148947936 -78576642 - L1ME4a LINE L1 -30 6091 5751 322 186 14 0 chr3 148948181 148948251 -78576327 - L1ME4a LINE L1 -436 5685 5615 22 0 0 0 chr3 148948672 148948694 -78575884 + AT_rich Low_complexity Low_complexity 1 22 0 4066 244 115 31 chr3 148948720 148949459 -78575119 + HAL1 LINE L1 13 689 -1818 1849 167 10 0 chr3 148949459 148949759 -78574819 - AluJo SINE Alu -9 303 1 4066 244 115 31 chr3 148949759 148950712 -78573866 + HAL1 LINE L1 689 1847 -660 338 237 55 97 chr3 148950829 148951067 -78573511 + HAL1 LINE L1 2240 2468 -39 996 158 8 96 chr3 148951067 148951307 -78573271 + MER20 DNA MER1_type 1 219 0 338 237 55 97 chr3 148951307 148951325 -78573253 + HAL1 LINE L1 2468 2485 -22 234 150 0 0 chr3 148952025 148952065 -78572513 + (AGGGGG)n Simple_repeat Simple_repeat 6 45 0 210 336 121 27 chr3 148953265 148953414 -78571164 + L2 LINE L2 3107 3269 -3 2137 152 0 0 chr3 148953530 148953839 -78570739 - AluSx SINE Alu -3 309 1 345 109 0 0 chr3 148954526 148954590 -78569988 + (TTTA)n Simple_repeat Simple_repeat 1 64 0 7773 7 0 0 chr3 148954726 148955919 -78568659 - L1HS LINE L1 0 6155 4963 35660 30 0 0 chr3 148956019 148960538 -78564040 - L1P LINE L1 -729 5426 908 661 24 12 0 chr3 148960536 148960621 -78563957 - L1P LINE L1 -6048 98 13 * 24 32 0 0 chr3 148960763 148960794 -78563784 + AT_rich Low_complexity Low_complexity 1 31 0 303 283 71 9 chr3 148960806 148960919 -78563659 - L1ME4a LINE L1 -33 6088 5969 347 279 101 32 chr3 148961271 148961490 -78563088 - L1M4 LINE L1 -1600 4546 4313 406 169 26 0 chr3 148962231 148962308 -78562270 + MIR SINE MIR 113 191 -71 2802 179 64 34 chr3 148963396 148964071 -78560507 - L1MC3 LINE L1 0 7785 7091 498 234 134 29 chr3 148964174 148964345 -78560233 + MER5A DNA MER1_type 1 189 0 188 121 30 0 chr3 148965574 148965607 -78558971 + L2 LINE L2 2227 2260 -1054 193 337 24 24 chr3 148965785 148965868 -78558710 + L2 LINE L2 2571 2653 -661 2191 119 0 3 chr3 148965884 148966178 -78558400 - AluSx SINE Alu -19 293 1 2416 71 0 0 chr3 148966484 148966778 -78557800 - AluY SINE Alu -17 294 1 397 240 96 10 chr3 148966943 148967047 -78557531 - L2 LINE L2 0 3313 3201 238 273 0 15 chr3 148967062 148967128 -78557450 + L2 LINE L2 3207 3271 -1 422 326 107 21 chr3 148967923 148968251 -78556327 + L1 LINE L1 4185 4540 -1606 456 324 171 6 chr3 148968714 148969195 -78555383 + L2 LINE L2 1731 2290 -1024 1070 208 0 45 chr3 148969195 148969416 -78555162 + AluJo SINE Alu 87 297 -15 230 346 143 32 chr3 148969463 148969931 -78554647 + L2 LINE L2 2364 2883 -431 190 376 111 37 chr3 148970066 148970255 -78554323 + L2 LINE L2 3031 3233 -39 348 300 122 26 chr3 148970932 148971162 -78553416 - MIR SINE MIR -2 260 9 390 309 118 7 chr3 148972050 148972186 -78552392 + L2 LINE L2 3121 3271 -1 998 221 44 12 chr3 148972360 148972609 -78551969 - MIR SINE MIR -3 259 3 12290 184 44 6 chr3 148973831 148976566 -78548012 + L1PA15 LINE L1 2558 5397 -749 4429 128 34 4 chr3 148976821 148977576 -78547002 + L1PA15 LINE L1 5387 6164 -1 563 231 55 33 chr3 148977763 148977945 -78546633 - L2 LINE L2 -1 3312 3127 544 250 67 18 chr3 148977968 148978132 -78546446 + MER5A DNA MER1_type 12 183 -6 482 290 28 23 chr3 148978146 148978322 -78546256 - MER5B DNA MER1_type 0 178 2 197 296 0 0 chr3 148978351 148978405 -78546173 - L2 LINE L2 -553 2761 2708 207 0 0 0 chr3 148979379 148979402 -78545176 + (A)n Simple_repeat Simple_repeat 1 23 0 216 0 0 0 chr3 148980564 148980588 -78543990 + (A)n Simple_repeat Simple_repeat 1 24 0 531 312 52 28 chr3 148980758 148981008 -78543570 + MIR SINE MIR 4 259 -3 281 347 53 12 chr3 148981161 148981331 -78543247 - MIR SINE MIR -10 252 76 1382 206 97 19 chr3 148981531 148981943 -78542635 + L1ME3A LINE L1 5727 6170 0 2112 136 55 3 chr3 148982218 148982564 -78542014 + THE1B LTR MaLR 1 364 0 21 0 0 0 chr3 148983020 148983041 -78541537 + AT_rich Low_complexity Low_complexity 1 21 0 2241 80 10 3 chr3 148984888 148985187 -78539391 + AluY SINE Alu 1 301 -10 1963 43 8 0 chr3 148985187 148985440 -78539138 + L1PA5 LINE L1 5900 6154 0 25 31 0 0 chr3 148985440 148985472 -78539106 + AT_rich Low_complexity Low_complexity 1 32 0 234 0 0 0 chr3 148985472 148985498 -78539080 + (T)n Simple_repeat Simple_repeat 1 26 0 567 208 220 0 chr3 148986369 148986542 -78538036 - MIR SINE MIR 0 262 52 991 280 197 16 chr3 148986669 148987437 -78537141 + L2 LINE L2 2401 3313 0 603 269 42 12 chr3 148987731 148987898 -78536680 - MIR SINE MIR -50 212 41 365 268 65 12 chr3 148988524 148988692 -78535886 + L1MEd LINE L1 1029 1205 -4914 848 239 82 20 chr3 148989721 148990027 -78534551 + LTR16A1 LTR ERVL 131 455 -2 800 223 47 33 chr3 148991035 148991246 -78533332 - MER20 DNA MER1_type 0 219 6 213 288 0 0 chr3 148992672 148992745 -78531833 + (TA)n Simple_repeat Simple_repeat 1 73 0 232 287 0 40 chr3 148992904 148993005 -78531573 + A-rich Low_complexity Low_complexity 5 101 0 2579 166 148 15 chr3 148994006 148994145 -78530433 - L1MCa LINE L1 -3876 2731 2612 2382 98 0 3 chr3 148994145 148994450 -78530128 - AluSc SINE Alu -5 304 1 2579 166 148 15 chr3 148994450 148995170 -78529408 - L1MCa LINE L1 -3995 2612 1741 * 3807 185 60 40 chr3 148995167 148996549 -78528029 - L1MA9 LINE L1 -38 6274 4870 1712 169 154 20 chr3 148996548 148996699 -78527879 - L1MCa LINE L1 -4761 1665 1536 * 2291 89 0 10 chr3 148996699 148997001 -78527577 - AluSq SINE Alu -12 301 3 1712 169 154 20 chr3 148997001 148997341 -78527237 - L1MCa LINE L1 -4890 1536 1108 4446 134 105 76 chr3 148997344 148998861 -78525717 - pTR5 LTR ERV1 0 2438 741 538 161 59 0 chr3 148998861 148998979 -78525599 - L1MCa LINE L1 -5315 1111 987 3975 169 108 13 chr3 148999079 149000002 -78524576 - L1P LINE L1 -1135 5011 4001 2179 94 12 0 chr3 149000002 149000321 -78524257 - THE1A LTR MaLR 0 355 33 327 301 7 70 chr3 149000659 149000751 -78523827 + MIR3 SINE MIR 61 142 -66 2936 6 0 0 chr3 149000751 149001068 -78523510 + AluYb8 SINE Alu 1 317 -1 327 301 7 70 chr3 149001068 149001118 -78523460 + MIR3 SINE MIR 142 194 -14 600 290 50 36 chr3 149003555 149003816 -78520762 - MIR SINE MIR 0 262 4 247 265 205 26 chr3 149005535 149005652 -78518926 + MIR3 SINE MIR 10 147 -61 21 36 0 0 chr3 149005717 149005745 -78518833 + AT_rich Low_complexity Low_complexity 1 28 0 363 211 103 76 chr3 149006001 149006224 -78518354 + L1 LINE L1 3124 3352 -2794 373 371 0 7 chr3 149006253 149006404 -78518174 + L1 LINE L1 3545 3694 -2452 1271 158 0 50 chr3 149007255 149007476 -78517102 + AluJb SINE Alu 85 294 -18 662 240 158 0 chr3 149007508 149007654 -78516924 + MER5A DNA MER1_type 19 187 -2 475 298 102 19 chr3 149007942 149008157 -78516421 - MIR SINE MIR -8 254 22 2273 90 0 34 chr3 149008523 149008845 -78515733 + AluY SINE Alu 1 311 0 338 247 165 0 chr3 149008874 149008971 -78515607 - MER81 DNA DNA 0 114 2 1214 208 143 46 chr3 149010316 149010730 -78513848 - LTR16A1 LTR ERVL 0 457 4 287 278 78 11 chr3 149014004 149014094 -78510484 + MIR SINE MIR 56 151 -57 265 237 51 70 chr3 149014921 149015077 -78509501 + LTR16C LTR ERVL 332 484 -7 384 257 185 36 chr3 149015608 149015830 -78508748 - MIR SINE MIR -1 261 7 580 326 37 16 chr3 149016111 149016353 -78508225 + MIR SINE MIR 14 260 -2 224 303 127 28 chr3 149016402 149016551 -78508027 - MIR3 SINE MIR -8 200 40 238 237 17 0 chr3 149018089 149018148 -78506430 - MIR SINE MIR -59 203 144 889 256 151 25 chr3 149018261 149018899 -78505679 + L2 LINE L2 2589 3305 -8 488 310 50 36 chr3 149018935 149019274 -78505304 - L2 LINE L2 -193 3079 2737 230 245 0 0 chr3 149019330 149019379 -78505199 + MIR3 SINE MIR 157 205 -3 277 305 201 0 chr3 149019719 149019873 -78504705 + MIR SINE MIR 47 231 -31 432 249 152 18 chr3 149021251 149021416 -78503162 - MIR SINE MIR -3 259 73 639 331 131 26 chr3 149021548 149022384 -78502194 - L2 LINE L2 -176 3096 2178 1424 255 71 5 chr3 149022833 149023241 -78501337 - LTR16C LTR ERVL -5 486 52 323 286 67 25 chr3 149024255 149024374 -78500204 - L2 LINE L2 -2 3311 3188 322 226 169 8 chr3 149025102 149025226 -78499352 - MIR SINE MIR -12 250 107 27 29 0 0 chr3 149025877 149025911 -78498667 + AT_rich Low_complexity Low_complexity 1 34 0 2164 69 7 0 chr3 149026090 149026364 -78498214 + AluSp SINE Alu 23 298 -15 25 65 0 0 chr3 149027733 149027779 -78496799 + GC_rich Low_complexity Low_complexity 1 46 0 523 334 118 27 chr3 149028341 149028670 -78495908 - L2 LINE L2 -5 3267 2909 180 0 0 0 chr3 149029163 149029183 -78495395 + (CAA)n Simple_repeat Simple_repeat 2 21 0 966 143 6 11 chr3 149029386 149029568 -78495010 + L1MA4A LINE L1 6119 6299 -4 216 148 0 131 chr3 149030695 149030720 -78493858 - L2 LINE L2 0 3313 3299 8257 122 18 4 chr3 149030720 149032002 -78492576 - HSMAR2 DNA Mariner 0 1302 3 216 148 0 131 chr3 149032002 149032037 -78492541 - L2 LINE L2 -14 3299 3261 429 293 258 29 chr3 149032129 149032505 -78492073 - L2 LINE L2 0 3272 2811 * 560 308 62 39 chr3 149032502 149032810 -78491768 - L2 LINE L2 -826 2488 2174 832 261 227 39 chr3 149032824 149033533 -78491045 - L2 LINE L2 -2 3311 2450 231 218 36 146 chr3 149035071 149035181 -78489397 - MIR SINE MIR -122 140 43 286 68 45 0 chr3 149035245 149035289 -78489289 + MLT1G1 LTR MaLR 2 47 -548 1033 199 0 0 chr3 149035382 149035578 -78489000 - LTR16C LTR ERVL -18 473 278 1074 134 74 52 chr3 149036476 149036707 -78487871 - MLT1B LTR MaLR -43 347 112 2115 161 29 23 chr3 149036752 149037194 -78487384 - L1MA9 LINE L1 -3 6309 5865 2248 98 0 14 chr3 149037687 149037984 -78486594 + AluSx SINE Alu 1 293 -19 330 333 76 29 chr3 149039407 149039578 -78485000 - MIR3 SINE MIR -21 187 9 1266 286 87 19 chr3 149040292 149040775 -78483803 - MLT1G1 LTR MaLR -7 588 73 314 294 63 21 chr3 149041050 149041193 -78483385 + L1ME LINE L1 5260 5388 -733 325 256 106 44 chr3 149041647 149041874 -78482704 + L1ME LINE L1 5386 5626 -495 617 204 8 15 chr3 149041966 149042098 -78482480 + MER94 DNA DNA 3 133 -1 316 76 15 136 chr3 149042134 149042200 -78482378 - MLT2D LTR ERVL -58 356 299 351 323 216 11 chr3 149042514 149042876 -78481702 - L1 LINE L1 -1623 4523 4088 369 346 23 8 chr3 149043137 149043267 -78481311 + L2 LINE L2 3178 3309 -4 295 299 21 21 chr3 149043854 149043951 -78480627 - L3 LINE CR1 -60 1517 1421 410 359 73 9 chr3 149044145 149044365 -78480213 + L1ME LINE L1 5317 5550 -571 1052 158 20 5 chr3 149044405 149044601 -78479977 + MLT2D LTR ERVL 1 199 -215 2438 61 0 23 chr3 149044601 149044911 -78479667 + AluY SINE Alu 1 303 -8 247 146 36 0 chr3 149044924 149044979 -78479599 + A-rich Low_complexity Low_complexity 5 61 0 568 258 8 0 chr3 149044979 149045107 -78479471 + MLT2D LTR ERVL 188 316 -98 319 322 0 0 chr3 149045165 149045255 -78479323 + L1MC4 LINE L1 6614 6703 -1339 * 336 272 0 22 chr3 149045179 149045271 -78479307 - L1MC4 LINE L1 -1339 6703 6614 312 333 0 0 chr3 149045265 149045361 -78479217 + L1MC4 LINE L1 6614 6709 -1333 * 314 182 0 13 chr3 149045361 149045438 -78479140 + (TA)n Simple_repeat Simple_repeat 2 77 0 189 0 0 0 chr3 149045438 149045459 -78479119 + (TG)n Simple_repeat Simple_repeat 2 22 0 315 100 0 50 chr3 149045460 149045520 -78479058 + MLT2B1 LTR ERVL 464 520 0 265 174 58 14 chr3 149045529 149045598 -78478980 + L1ME LINE L1 5621 5692 -429 694 156 0 0 chr3 149045812 149045934 -78478644 + MER3 DNA MER1_type 41 162 -47 604 238 6 6 chr3 149045953 149046121 -78478457 + MER3 DNA MER1_type 2241 2408 0 1984 115 28 7 chr3 149046144 149046431 -78478147 - AluSc SINE Alu -16 293 1 3533 144 71 6 chr3 149047237 149047911 -78476667 + L1MA8 LINE L1 5557 6274 -17 456 328 74 63 chr3 149048124 149048203 -78476375 + HAL1 LINE L1 18 95 -2412 2317 138 35 26 chr3 149048203 149048413 -78476165 + MSTB1 LTR MaLR 1 208 -224 2230 117 16 0 chr3 149048413 149048721 -78475857 - AluSq SINE Alu 0 313 1 2317 138 35 26 chr3 149048721 149048938 -78475640 + MSTB1 LTR MaLR 208 432 0 456 328 74 63 chr3 149048938 149049236 -78475342 + HAL1 LINE L1 95 399 -2108 446 244 110 0 chr3 149049245 149049409 -78475169 + HAL1 LINE L1 766 947 -1560 210 224 0 35 chr3 149049424 149049482 -78475096 + A-rich Low_complexity Low_complexity 4 59 0 459 245 7 7 chr3 149049525 149049664 -78474914 + HAL1 LINE L1 1269 1407 -1100 430 263 32 13 chr3 149049698 149049854 -78474724 + HAL1 LINE L1 1406 1564 -943 2031 149 7 0 chr3 149049875 149050170 -78474408 - AluSx SINE Alu -15 297 1 2105 176 36 33 chr3 149050200 149050650 -78473928 - MLT1C LTR MaLR 0 467 17 530 229 38 33 chr3 149050665 149050848 -78473730 + HAL1 LINE L1 1601 1784 -723 357 262 82 49 chr3 149051157 149051284 -78473294 + HAL1 LINE L1 2247 2368 -139 1463 225 39 11 chr3 149051284 149051639 -78472939 - MLT1A1 LTR MaLR 0 365 1 357 262 82 49 chr3 149051639 149051755 -78472823 + HAL1 LINE L1 2368 2498 -9 497 289 38 6 chr3 149051783 149051868 -78472710 - MER5A DNA MER1_type -24 165 84 1857 117 0 0 chr3 149051868 149052115 -78472463 - AluSc SINE Alu -62 247 1 497 289 38 6 chr3 149052115 149052188 -78472390 - MER5A DNA MER1_type -105 84 2 252 317 0 12 chr3 149052918 149053000 -78471578 - MIR SINE MIR -118 144 64 232 270 27 40 chr3 149053443 149053517 -78471061 - MIR3 SINE MIR -9 199 127 430 289 71 53 chr3 149053533 149053777 -78470801 - MIR3 SINE MIR 0 262 2 424 250 43 21 chr3 149053861 149054001 -78470577 + MIR SINE MIR 109 251 -11 472 254 41 0 chr3 149054256 149054378 -78470200 + MER5B DNA MER1_type 25 151 -27 640 137 11 0 chr3 149054384 149054479 -78470099 + MER5A DNA MER1_type 94 189 0 388 336 157 4 chr3 149054585 149054853 -78469725 + L2 LINE L2 2575 2883 -431 274 350 64 77 chr3 149054953 149055264 -78469314 + L2 LINE L2 2944 3250 -22 581 258 152 7 chr3 149055341 149055492 -78469086 - MER5A DNA MER1_type 0 189 17 416 286 0 0 chr3 149056726 149056824 -78467754 - L2 LINE L2 -1 3312 3215 2383 65 0 3 chr3 149057619 149057912 -78466666 - AluY SINE Alu -19 292 1 5241 41 0 2 chr3 149058051 149058685 -78465893 + L1PA4 LINE L1 5523 6155 0 453 316 105 22 chr3 149059224 149059594 -78464984 - L1ME3A LINE L1 -287 5883 5483 303 28 0 0 chr3 149059630 149059666 -78464912 + (CA)n Simple_repeat Simple_repeat 2 37 0 3560 85 2 0 chr3 149061486 149062001 -78462577 - L1P LINE L1 -3939 2207 1692 7851 87 9 1 chr3 149062001 149063880 -78460698 + L1PA7 LINE L1 4268 6154 0 515 276 44 48 chr3 149063895 149064145 -78460433 + LTR16A1 LTR ERVL 209 457 0 1508 225 133 30 chr3 149064168 149064962 -78459616 - Charlie2a DNA MER1_type -1 2861 1986 1121 234 50 26 chr3 149064962 149065381 -78459197 - Charlie2a DNA MER1_type -959 1903 1475 303 28 42 56 chr3 149065446 149065518 -78459060 + (TTTTTG)n Simple_repeat Simple_repeat 3 73 0 1850 191 19 11 chr3 149065543 149065905 -78458673 - MLT1A1 LTR MaLR 0 365 1 1191 237 115 84 chr3 149065909 149066517 -78458061 - Charlie2 DNA MER1_type -2155 627 1 379 347 24 0 chr3 149066519 149066655 -78457923 - MIR3 SINE MIR -50 158 8 889 272 54 0 chr3 149066706 149066945 -78457633 - MIR SINE MIR 0 262 11 805 172 0 0 chr3 149067234 149067356 -78457222 - MER5A DNA MER1_type -66 123 2 225 325 12 12 chr3 149067857 149067937 -78456641 + MIR3 SINE MIR 91 170 -38 681 208 5 88 chr3 149068285 149068477 -78456101 - MER5B DNA MER1_type 0 178 3 1355 191 89 40 chr3 149068523 149068895 -78455683 + MLT1B LTR MaLR 1 390 0 337 279 0 58 chr3 149068998 149069152 -78455426 + MIR SINE MIR 94 238 -24 1881 212 89 70 chr3 149069320 149069900 -78454678 - L1MDb LINE L1 -4550 1856 1267 1758 190 19 16 chr3 149069900 149070211 -78454367 - AluJb SINE Alu 0 312 1 1881 212 89 70 chr3 149070211 149070697 -78453881 - L1MDb LINE L1 -5139 1267 792 300 79 0 0 chr3 149070867 149070905 -78453673 - LTR3b LTR ERVK 0 500 463 3327 93 22 6 chr3 149070905 149071397 -78453181 - LTR3b LTR ERVK 0 500 1 361 277 85 54 chr3 149071530 149071798 -78452780 - L1MDb LINE L1 -5775 621 23 22 70 0 0 chr3 149071834 149071877 -78452701 + AT_rich Low_complexity Low_complexity 1 43 0 444 193 0 0 chr3 149072009 149072123 -78452455 + (TA)n Simple_repeat Simple_repeat 1 114 0 740 235 52 0 chr3 149072151 149072364 -78452214 - L1ME LINE L1 -361 5809 5586 276 53 0 0 chr3 149073835 149073873 -78450705 + (CA)n Simple_repeat Simple_repeat 2 39 0 37 23 0 0 chr3 149074372 149074416 -78450162 + AT_rich Low_complexity Low_complexity 1 44 0 607 329 71 0 chr3 149074983 149075208 -78449370 + MIR SINE MIR 3 243 -19 422 191 135 67 chr3 149076206 149076384 -78448194 - MER117 DNA MER1_type -4 193 4 180 0 0 0 chr3 149076806 149076826 -78447752 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 676 193 69 86 chr3 149077271 149077496 -78447082 - L1MEc LINE L1 -2291 3924 3700 796 154 18 95 chr3 149077496 149077717 -78446861 - L1MA4 LINE L1 -135 6165 3571 624 92 0 18 chr3 149077720 149077829 -78446749 + L1MA4 LINE L1 6193 6299 -1 3661 226 35 5 chr3 149077843 149078859 -78445719 - L1MEc LINE L1 -2510 3705 2659 3068 266 76 11 chr3 149078883 149079982 -78444596 - L1MEc LINE L1 -5179 1217 47 1797 179 7 10 chr3 149080506 149080813 -78443765 + AluJo SINE Alu 2 307 -5 557 355 0 9 chr3 149081804 149082021 -78442557 - MIR SINE MIR -13 249 35 368 261 119 21 chr3 149082239 149082394 -78442184 + MIR SINE MIR 23 188 -68 34 24 0 0 chr3 149083154 149083195 -78441383 + AT_rich Low_complexity Low_complexity 1 41 0 613 314 79 4 chr3 149083329 149083558 -78441020 + MIR SINE MIR 2 247 -15 403 215 25 13 chr3 149083981 149084139 -78440439 + (CCA)n Simple_repeat Simple_repeat 2 161 0 463 218 0 12 chr3 149084154 149084324 -78440254 + (CCA)n Simple_repeat Simple_repeat 1 168 0 362 309 69 20 chr3 149084861 149085065 -78439513 + L1ME4a LINE L1 5691 5904 -217 703 178 71 59 chr3 149085349 149085518 -78439060 - MER20 DNA MER1_type -40 179 9 1089 186 5 0 chr3 149086358 149086546 -78438032 - MER5A DNA MER1_type 0 189 1 269 361 30 48 chr3 149086550 149086716 -78437862 - MER5A DNA MER1_type -1 188 26 1406 116 37 61 chr3 149088315 149088609 -78435969 - L1MA2 LINE L1 0 6304 6018 667 109 0 64 chr3 149088831 149088941 -78435637 + AluSp/q SINE Alu 189 291 -22 1924 153 3 34 chr3 149089758 149090078 -78434500 - AluJo SINE Alu -1 311 2 7732 72 5 8 chr3 149091534 149092595 -78431983 + MER11C LTR ERVK 1 1057 -14 49898 79 3 3 chr3 149092634 149099399 -78425179 + HERVK11 LTR ERVK 1 6765 -1188 8432 50 3 0 chr3 149099383 149100380 -78424198 + HERVK11 LTR ERVK 6954 7953 0 * 4558 46 21 5 chr3 149100380 149100949 -78423629 + MER11B LTR ERVK 1 578 -658 419 322 14 14 chr3 149102129 149102272 -78422306 + HsTC2 DNA Tc2 6 148 -1750 2024 227 113 4 chr3 149102281 149102837 -78421741 + HsTC2 DNA Tc2 1279 1895 -3 1092 173 42 23 chr3 149103090 149103304 -78421274 - MER20 DNA MER1_type -1 218 1 205 286 127 0 chr3 149103319 149103382 -78421196 - MER5C DNA MER1_type -6 318 248 409 217 96 17 chr3 149103439 149103554 -78421024 - MER5C DNA MER1_type -200 124 1 420 296 169 14 chr3 149103565 149103707 -78420871 + MER5A DNA MER1_type 16 179 -10 198 0 0 0 chr3 149105578 149105600 -78418978 + (CA)n Simple_repeat Simple_repeat 1 22 0 207 309 0 0 chr3 149106103 149106158 -78418420 - L2 LINE L2 0 3313 3259 354 45 0 0 chr3 149106510 149106554 -78418024 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 2332 301 62 108 chr3 149106554 149106645 -78417933 - L2 LINE L2 -13 3300 3206 2095 126 10 0 chr3 149106645 149106946 -78417632 + AluSg SINE Alu 1 304 -6 2332 301 62 108 chr3 149106946 149108627 -78415951 - L2 LINE L2 -107 3206 1611 221 153 35 35 chr3 149108638 149108723 -78415855 + (TAA)n Simple_repeat Simple_repeat 2 86 0 8804 95 4 2 chr3 149108948 149110952 -78413626 + L1PA8A LINE L1 4094 6104 -27 23 68 0 0 chr3 149110952 149110996 -78413582 + AT_rich Low_complexity Low_complexity 1 44 0 426 236 99 71 chr3 149111045 149111257 -78413321 + L1MC/D LINE L1 5315 5532 -589 612 270 62 38 chr3 149112298 149112372 -78412206 + MIR SINE MIR 47 118 -144 2136 115 14 0 chr3 149112372 149112668 -78411910 - AluSc SINE Alu -9 300 1 612 270 62 38 chr3 149112668 149112804 -78411774 + MIR SINE MIR 118 262 0 446 207 21 16 chr3 149113749 149113889 -78410689 + L1MD2 LINE L1 6023 6166 0 201 353 43 17 chr3 149113979 149114095 -78410483 - L2 LINE L2 0 3313 3195 24 32 0 0 chr3 149120733 149120764 -78403814 + AT_rich Low_complexity Low_complexity 1 31 0 401 259 117 56 chr3 149120821 149120983 -78403595 - MIR SINE MIR -71 191 20 24 0 0 0 chr3 149121182 149121206 -78403372 + AT_rich Low_complexity Low_complexity 1 24 0 345 276 138 0 chr3 149121927 149122050 -78402528 - MIR3 SINE MIR 0 208 69 32 0 0 0 chr3 149122409 149122441 -78402137 + AT_rich Low_complexity Low_complexity 1 32 0 403 327 19 13 chr3 149123073 149123232 -78401346 - L2 LINE L2 -556 2758 2599 1060 273 47 43 chr3 149124069 149124637 -78399941 + L1ME4a LINE L1 5313 5879 -242 244 188 29 14 chr3 149124742 149124811 -78399767 + CT-rich Low_complexity Low_complexity 3 72 0 2488 133 24 14 chr3 149125053 149125467 -78399111 - L1MA8 LINE L1 -168 6123 5706 213 307 23 64 chr3 149126453 149126671 -78397907 - L2 LINE L2 -143 3129 2921 1206 169 22 59 chr3 149126753 149127025 -78397553 - L1MA9 LINE L1 -24 6288 6027 638 245 37 0 chr3 149127052 149127215 -78397363 - MER45A DNA AcHobo 0 178 10 2944 62 0 6 chr3 149127669 149128025 -78396553 + L1PA8 LINE L1 5818 6171 -1 284 127 0 0 chr3 149128026 149128081 -78396497 + L1MA7 LINE L1 6237 6291 0 2745 62 0 9 chr3 149128310 149128647 -78395931 + L1PA8 LINE L1 5838 6171 -1 284 127 0 0 chr3 149128648 149128703 -78395875 + L1MA7 LINE L1 6237 6291 0 339 265 20 0 chr3 149129020 149129118 -78395460 - MER91B DNA MER1_type 0 190 91 22 56 0 0 chr3 149129746 149129782 -78394796 + AT_rich Low_complexity Low_complexity 1 36 0 965 228 27 9 chr3 149133161 149133385 -78391193 + MIR SINE MIR 14 241 -21 945 183 12 122 chr3 149134683 149134929 -78389649 + MER20 DNA MER1_type 1 219 0 1074 176 47 0 chr3 149136464 149136510 -78388068 + MER3 DNA MER1_type 2 56 -153 386 244 91 51 chr3 149136510 149136686 -78387892 - MER3 DNA MER1_type 0 209 27 4545 147 42 53 chr3 149136727 149137732 -78386846 - MER11C LTR ERVK 0 1071 1 273 277 0 0 chr3 149137861 149137926 -78386652 - MER96 DNA MER1_type? -1 174 110 752 292 77 65 chr3 149138020 149138690 -78385888 + L2 LINE L2 2567 3254 -18 253 329 0 13 chr3 149139784 149139860 -78384718 + GA-rich Low_complexity Low_complexity 2 76 0 321 301 44 9 chr3 149140617 149140730 -78383848 + L2 LINE L2 3154 3270 -2 384 222 185 9 chr3 149141076 149141184 -78383394 - MIR SINE MIR -124 138 12 245 222 28 14 chr3 149141697 149141769 -78382809 + (CAAA)n Simple_repeat Simple_repeat 4 76 0 254 71 0 24 chr3 149141824 149141866 -78382712 + (TG)n Simple_repeat Simple_repeat 1 41 0 535 263 55 54 chr3 149142806 149143235 -78381343 - L1ME3 LINE L1 -64 6098 5688 726 186 47 16 chr3 149143274 149143403 -78381175 - FLAM_A SINE Alu 0 133 1 230 177 0 16 chr3 149145047 149145109 -78379469 + (TTCA)n Simple_repeat Simple_repeat 4 64 0 539 372 62 17 chr3 149145136 149145426 -78379152 - L2 LINE L2 -21 3251 2949 2093 104 0 34 chr3 149145500 149145798 -78378780 + AluSq SINE Alu 1 288 -25 2349 97 0 3 chr3 149145892 149146200 -78378378 + AluY SINE Alu 1 307 -4 212 406 15 8 chr3 149146201 149146334 -78378244 - L2 LINE L2 -469 2845 2712 513 245 57 23 chr3 149146606 149146827 -78377751 - LTR16A1 LTR ERVL 0 457 194 2436 90 0 0 chr3 149147133 149147434 -78377144 + AluY SINE Alu 1 301 -10 346 118 0 29 chr3 149148131 149148199 -78376379 + (TA)n Simple_repeat Simple_repeat 2 67 0 2507 67 0 16 chr3 149148396 149148711 -78375867 + AluY SINE Alu 1 310 -1 884 248 50 27 chr3 149148745 149149043 -78375535 - MER102b DNA MER1_type -1 340 36 318 327 33 13 chr3 149149408 149149558 -78375020 + MER102a DNA MER1_type 178 330 0 267 31 0 0 chr3 149149644 149149676 -78374902 + (CA)n Simple_repeat Simple_repeat 2 33 0 436 282 131 21 chr3 149151122 149151316 -78373262 - MIR SINE MIR -50 212 16 616 300 94 33 chr3 149151564 149151957 -78372621 + LTR16A LTR ERVL 1 417 -33 243 0 0 0 chr3 149152459 149152486 -78372092 + (CA)n Simple_repeat Simple_repeat 2 28 0 223 188 14 14 chr3 149152925 149152994 -78371584 + GA-rich Low_complexity Low_complexity 4 72 0 280 308 51 17 chr3 149153625 149153742 -78370836 - MIR3 SINE MIR -30 178 58 241 256 372 8 chr3 149154457 149154578 -78370000 - MIR SINE MIR -6 256 92 273 234 22 131 chr3 149157242 149157379 -78367199 - L2 LINE L2 -1 3312 3191 231 167 0 0 chr3 149157609 149157651 -78366927 + (TA)n Simple_repeat Simple_repeat 2 43 0 717 311 65 12 chr3 149158191 149158512 -78366066 + MLT1J LTR MaLR 1 338 -173 571 280 187 5 chr3 149159196 149159410 -78365168 - MIR SINE MIR -3 259 7 184 234 128 0 chr3 149159694 149159741 -78364837 - MIR SINE MIR -81 181 129 288 363 0 10 chr3 149160943 149161045 -78363533 - MIR SINE MIR -76 132 32 990 288 148 13 chr3 149161130 149161713 -78362865 + L2 LINE L2 2644 3311 -2 752 203 34 34 chr3 149162208 149162415 -78362163 - MER3 DNA MER1_type 0 209 3 203 184 0 0 chr3 149162457 149162495 -78362083 + (TA)n Simple_repeat Simple_repeat 2 39 0 368 320 41 14 chr3 149162937 149163084 -78361494 - MER5B DNA MER1_type -1 177 27 203 50 0 75 chr3 149163309 149163349 -78361229 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 374 264 59 14 chr3 149164067 149164287 -78360291 + L1ME4a LINE L1 5654 5883 -238 1323 260 46 42 chr3 149164295 149164799 -78359779 + MLT1J LTR MaLR 4 509 -2 1071 182 30 0 chr3 149164821 149165024 -78359554 - MER3 DNA MER1_type 0 209 1 183 172 16 31 chr3 149165089 149165153 -78359425 + GA-rich Low_complexity Low_complexity 2 64 0 642 277 20 0 chr3 149165280 149165475 -78359103 - L1ME1 LINE L1 -4 6162 5964 267 269 0 0 chr3 149166398 149166506 -78358072 + (CCA)n Simple_repeat Simple_repeat 2 109 0 1117 290 114 29 chr3 149166564 149167429 -78357149 - L2 LINE L2 -40 3273 2259 275 302 177 0 chr3 149167534 149167630 -78356948 + L2 LINE L2 3155 3267 -5 553 231 105 7 chr3 149167792 149167935 -78356643 - MIR SINE MIR -94 168 12 223 237 172 11 chr3 149168231 149168324 -78356254 - L2 LINE L2 0 3313 3206 2154 124 52 0 chr3 149169622 149169970 -78354608 + THE1C LTR MaLR 6 371 -4 573 257 60 6 chr3 149170091 149170274 -78354304 - LTR16A1 LTR ERVL -97 360 168 255 135 0 0 chr3 149170502 149170539 -78354039 + MER63 DNA MER1_type 2 38 -1023 202 209 0 0 chr3 149170682 149170725 -78353853 + (CA)n Simple_repeat Simple_repeat 2 44 0 636 168 0 128 chr3 149170743 149170812 -78353766 + Tigger3(Golem) DNA MER2_type 13 55 -1176 1863 170 3 0 chr3 149170812 149171100 -78353478 + AluJb SINE Alu 1 289 -23 636 168 0 128 chr3 149171100 149171179 -78353399 + Tigger3(Golem) DNA MER2_type 55 142 -1089 * 1538 151 16 0 chr3 149171178 149171430 -78353148 + Tigger3(Golem) DNA MER2_type 2773 3028 -1 21 57 0 0 chr3 149171963 149171998 -78352580 + AT_rich Low_complexity Low_complexity 1 35 0 552 287 6 12 chr3 149172114 149172278 -78352300 - MIR SINE MIR 0 262 100 210 297 81 0 chr3 149172760 149172834 -78351744 - MIR3 SINE MIR -5 203 124 3677 174 39 29 chr3 149172834 149174366 -78350212 - L1MB7 LINE L1 -128 6056 4516 225 172 151 65 chr3 149174749 149174842 -78349736 - L1ME LINE L1 -481 5640 5540 302 244 98 0 chr3 149175354 149175436 -78349142 + L3 LINE CR1 1487 1576 -1 342 23 0 0 chr3 149176246 149176289 -78348289 - MADE1 DNA Mariner -9 71 29 261 109 0 0 chr3 149177000 149177046 -78347532 + (CA)n Simple_repeat Simple_repeat 2 47 0 289 252 30 69 chr3 149177049 149177180 -78347398 + L2 LINE L2 3188 3313 0 440 264 33 8 chr3 149177859 149177980 -78346598 - L2 LINE L2 0 3313 3190 289 418 0 0 chr3 149177976 149178079 -78346499 + L2 LINE L2 3123 3225 -47 * 201 284 111 0 chr3 149178512 149178593 -78345985 - L2 LINE L2 -45 3227 3138 261 231 0 0 chr3 149178755 149178807 -78345771 + L2 LINE L2 3262 3313 0 234 274 0 0 chr3 149179014 149179065 -78345513 + MIR3 SINE MIR 109 159 -49 860 189 67 0 chr3 149179652 149179816 -78344762 - MER5B DNA MER1_type -2 176 2 295 290 30 10 chr3 149179888 149179988 -78344590 + MIR SINE MIR 112 213 -49 2411 32 4 0 chr3 149179988 149180294 -78344284 + AluYa5 SINE Alu 1 307 0 253 299 115 32 chr3 149180354 149180511 -78344067 + MLT1K LTR MaLR 84 253 -335 525 251 70 12 chr3 149180534 149180705 -78343873 + MLT1K LTR MaLR 401 581 -7 277 275 44 0 chr3 149181406 149181497 -78343081 - MER94 DNA DNA -10 124 30 3496 188 32 35 chr3 149181502 149182253 -78342325 + L1MC1 LINE L1 26 774 -5652 1667 160 102 15 chr3 149182252 149182790 -78341788 + L1MC1 LINE L1 2094 2719 -3888 * 1823 174 26 5 chr3 149182790 149183170 -78341408 + L1MC1 LINE L1 4787 5174 -1252 297 0 0 0 chr3 149183241 149183274 -78341304 + (TA)n Simple_repeat Simple_repeat 1 33 0 231 125 0 0 chr3 149183275 149183315 -78341263 + (GA)n Simple_repeat Simple_repeat 1 40 0 393 262 7 7 chr3 149183316 149183465 -78341113 + L1MC1 LINE L1 5244 5392 -1034 796 265 69 46 chr3 149183654 149184043 -78340535 + MLT1J2 LTR MaLR 11 408 -42 284 295 37 9 chr3 149184859 149185000 -78339578 - L2 LINE L2 -214 3058 2914 385 299 102 0 chr3 149185586 149185723 -78338855 + MIR3 SINE MIR 28 178 -30 195 296 189 23 chr3 149187022 149187154 -78337424 + MIR SINE MIR 29 182 -80 225 275 296 28 chr3 149187161 149187303 -78337275 - MER5A DNA MER1_type 0 189 10 317 223 200 46 chr3 149187484 149187614 -78336964 - MIR SINE MIR -63 199 50 575 180 0 0 chr3 149187760 149187871 -78336707 + L1MA6 LINE L1 6190 6300 0 227 269 13 13 chr3 149188087 149188165 -78336413 + MIR SINE MIR 138 215 -47 5324 167 58 7 chr3 149188364 149189503 -78335075 + L1MC1 LINE L1 5401 6582 -31 502 213 73 15 chr3 149189517 149189653 -78334925 + L1ME2 LINE L1 6011 6154 -10 318 194 146 10 chr3 149189749 149189852 -78334726 + MER97c DNA MER1_type? 51 167 -923 22 80 0 0 chr3 149190118 149190168 -78334410 + AT_rich Low_complexity Low_complexity 1 50 0 474 215 44 37 chr3 149190606 149190741 -78333837 - MER58B DNA MER1_type -11 330 195 264 147 67 27 chr3 149190751 149190826 -78333752 + ORSL DNA AcHobo 12 89 -186 36 62 0 0 chr3 149190870 149190934 -78333644 + AT_rich Low_complexity Low_complexity 1 64 0 264 147 314 0 chr3 149191006 149191108 -78333470 + ORSL DNA AcHobo 142 275 0 684 291 92 31 chr3 149191452 149191865 -78332713 - L1MC4a LINE L1 -1978 5830 5393 319 278 109 71 chr3 149192057 149192239 -78332339 - L1MDa LINE L1 -1854 4686 4512 2595 55 0 0 chr3 149192239 149192546 -78332032 - AluY SINE Alu -4 307 1 319 278 109 71 chr3 149192546 149193025 -78331553 - L1MDa LINE L1 -2028 4512 4000 465 318 102 67 chr3 149193152 149193891 -78330687 - L1MDa LINE L1 -2685 3855 3070 507 71 12 71 chr3 149193891 149193976 -78330602 + MADE1 DNA Mariner 1 80 0 465 318 102 67 chr3 149193976 149194234 -78330344 - L1MDa LINE L1 -3470 3070 2823 264 315 22 11 chr3 149194303 149194392 -78330186 + L2 LINE L2 3223 3312 -1 329 324 58 43 chr3 149194517 149194852 -78329726 - L1MDa LINE L1 -3864 2676 2339 1486 182 35 0 chr3 149195319 149195632 -78328946 - MER33 DNA MER1_type 0 324 1 465 265 224 0 chr3 149195839 149195986 -78328592 - MER5A DNA MER1_type -1 188 9 380 192 23 15 chr3 149196308 149196438 -78328140 + CT-rich Low_complexity Low_complexity 1 131 0 392 266 214 6 chr3 149197445 149197618 -78326960 - MIR SINE MIR -25 237 29 322 269 48 70 chr3 149197765 149197959 -78326619 + MIR SINE MIR 24 212 -50 10171 62 5 1 chr3 149198139 149200209 -78324369 - L1PA6 LINE L1 -5 6149 4075 764 254 153 72 chr3 149200238 149200710 -78323868 + MLT1J LTR MaLR 2 511 0 471 253 123 6 chr3 149200964 149201126 -78323452 - MIR SINE MIR -1 261 81 7033 48 10 1 chr3 149201458 149202348 -78322230 + L1PA8 LINE L1 5275 6172 0 35 0 0 0 chr3 149203069 149203104 -78321474 + AT_rich Low_complexity Low_complexity 1 35 0 203 136 0 222 chr3 149204034 149204089 -78320489 + L3 LINE CR1 1499 1532 -45 796 220 27 11 chr3 149204089 149204275 -78320303 - MER5A DNA MER1_type 0 189 1 203 136 0 222 chr3 149204275 149204300 -78320278 + L3 LINE CR1 1532 1561 -16 24 0 0 0 chr3 149205329 149205353 -78319225 + AT_rich Low_complexity Low_complexity 1 24 0 297 228 109 0 chr3 149206647 149206739 -78317839 + MER113 DNA MER1_type? 363 464 -57 1831 233 63 4 chr3 149206773 149207236 -78317342 + MER110 LTR ERV1 2 491 0 280 332 183 14 chr3 149207583 149207791 -78316787 + MLT1K LTR MaLR 181 423 -165 356 348 12 12 chr3 149208432 149208596 -78315982 + MER5B DNA MER1_type 7 170 -8 2231 118 0 0 chr3 149208883 149209179 -78315399 + AluY SINE Alu 1 296 -15 1180 132 11 0 chr3 149209910 149210100 -78314478 - L1MA2 LINE L1 -8 6296 6105 7704 135 10 19 chr3 149210101 149211427 -78313151 + L1P LINE L1 3865 5178 -968 2326 82 35 9 chr3 149211532 149211873 -78312705 + L1PA11 LINE L1 5824 6173 -1 1979 107 0 17 chr3 149211889 149212178 -78312400 + AluSx SINE Alu 1 284 -28 207 0 0 0 chr3 149212178 149212201 -78312377 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 3057 86 94 20 chr3 149212213 149212714 -78311864 - L1MA2 LINE L1 -185 6119 5582 * 10424 160 88 12 chr3 149212710 149214862 -78309716 - L1MA2 LINE L1 -926 5220 2904 246 171 0 0 chr3 149215122 149215163 -78309415 + L1MB1 LINE L1 6124 6164 -4 180 97 0 0 chr3 149215166 149215197 -78309381 + (CATA)n Simple_repeat Simple_repeat 2 32 0 216 158 0 0 chr3 149215364 149215402 -78309176 + A-rich Low_complexity Low_complexity 1 38 0 262 303 184 64 chr3 149215683 149215901 -78308677 + MLT1L LTR MaLR 2 245 -370 4979 164 36 33 chr3 149215931 149217909 -78306669 - L1MB1 LINE L1 -7 6161 4183 3336 134 18 9 chr3 149217922 149218488 -78306090 - L1MA4A LINE L1 -9 6294 5724 2814 239 16 30 chr3 149218495 149219423 -78305155 - L1M4 LINE L1 -4531 2044 1166 287 215 15 15 chr3 149219984 149220049 -78304529 - L1M4 LINE L1 -6075 500 436 464 244 41 35 chr3 149220162 149220334 -78304244 + MLT1L LTR MaLR 443 615 0 253 208 0 65 chr3 149221004 149221081 -78303497 + MLT1K LTR MaLR 187 258 -330 275 189 32 95 chr3 149222269 149222364 -78302214 + MLT1H LTR MaLR 431 519 -30 1605 162 4 0 chr3 149222835 149223088 -78301490 + AluJb SINE Alu 27 280 -32 690 13 0 0 chr3 149223090 149223169 -78301409 + (GGAA)n Simple_repeat Simple_repeat 2 80 0 257 339 33 0 chr3 149223622 149223802 -78300776 + L1M4 LINE L1 3922 4107 -2039 * 2476 190 147 9 chr3 149223799 149224494 -78300084 - L1M4 LINE L1 -895 5251 4461 317 264 201 21 chr3 149224607 149224751 -78299827 - LTR50 LTR ERVL -241 554 385 1559 242 156 15 chr3 149224780 149225235 -78299343 - MLT1F LTR MaLR -23 519 1 503 180 70 31 chr3 149225514 149225642 -78298936 - L1MA9 LINE L1 0 6312 6180 4538 165 11 33 chr3 149225644 149227233 -78297345 - L1MA9 LINE L1 -231 6081 4538 451 329 59 53 chr3 149227235 149227691 -78296887 + HAL1 LINE L1 228 686 -1821 1071 65 0 0 chr3 149227703 149227841 -78296737 + L1PA14 LINE L1 6019 6156 -5 714 61 0 0 chr3 149227866 149227965 -78296613 + AluY SINE Alu 210 308 -3 1506 246 60 67 chr3 149228072 149228933 -78295645 + HAL1 LINE L1 786 1640 -867 3436 253 93 94 chr3 149228984 149229639 -78294939 - L2 LINE L2 -1313 2001 1347 1573 133 13 80 chr3 149229639 149229941 -78294637 - AluJo SINE Alu -30 282 1 3436 253 93 94 chr3 149229941 149231275 -78293303 - L2 LINE L2 -1967 1347 14 243 235 0 94 chr3 149231567 149231652 -78292926 - MIR3 SINE MIR -1 207 131 5496 62 7 0 chr3 149232574 149233278 -78291300 - L1PA6 LINE L1 -1 6153 5445 1747 35 0 0 chr3 149233278 149233544 -78291034 + L1PA6 LINE L1 5171 5436 -718 22 56 0 0 chr3 149233941 149233977 -78290601 + AT_rich Low_complexity Low_complexity 1 36 0 205 322 93 42 chr3 149234448 149234467 -78290111 - L2 LINE L2 -8 3264 3247 276 30 0 0 chr3 149234467 149234500 -78290078 + (TA)n Simple_repeat Simple_repeat 2 34 0 205 322 93 42 chr3 149234500 149234598 -78289980 - L2 LINE L2 -25 3247 3141 788 206 12 38 chr3 149234992 149235152 -78289426 + FRAM SINE Alu 1 156 -10 3706 113 15 0 chr3 149235799 149236340 -78288238 - L1PA15 LINE L1 -4 6161 5613 1003 88 0 0 chr3 149236342 149236479 -78288099 - L1PA15 LINE L1 -141 6024 5888 * 2447 110 21 9 chr3 149236466 149236990 -78287588 - L1PA15 LINE L1 -559 5606 5081 441 220 110 8 chr3 149237026 149237144 -78287434 - L2 LINE L2 -1 3312 3183 2139 211 86 30 chr3 149237165 149237667 -78286911 - MLT1F LTR MaLR -2 540 11 225 0 0 0 chr3 149237866 149237891 -78286687 + (TA)n Simple_repeat Simple_repeat 2 26 0 243 115 33 33 chr3 149238047 149238108 -78286470 + (TA)n Simple_repeat Simple_repeat 2 62 0 1927 153 44 36 chr3 149238111 149238476 -78286102 - THE1C LTR MaLR 0 375 8 233 276 11 35 chr3 149238478 149238565 -78286013 + L1MEd LINE L1 100 184 -5935 747 285 68 62 chr3 149238692 149239179 -78285399 + L1MEd LINE L1 364 853 -5266 900 259 100 30 chr3 149239197 149239830 -78284748 + L1MEd LINE L1 895 1608 -4702 858 290 46 0 chr3 149240479 149240717 -78283861 + MIR SINE MIR 5 253 -9 6145 87 7 12 chr3 149241087 149241974 -78282604 - L1PB2 LINE L1 -3 6148 5267 22 0 0 0 chr3 149242258 149242280 -78282298 + AT_rich Low_complexity Low_complexity 1 22 0 1027 348 49 15 chr3 149242692 149243103 -78281475 - L2 LINE L2 -453 2861 2437 214 309 105 49 chr3 149243766 149243928 -78280650 - L3b LINE CR1 -166 1417 1247 3180 166 23 73 chr3 149244863 149245606 -78278972 + MER67C LTR ERV1 1 706 -4 1939 132 10 3 chr3 149245763 149246059 -78278519 - MER66-int LTR ERV1 -4046 2630 2333 * 6892 183 71 41 chr3 149246044 149247915 -78276663 - MER66-int LTR ERV1 -4507 2169 205 2281 104 10 0 chr3 149248026 149248334 -78276244 + AluSq SINE Alu 1 311 -2 8294 66 4 15 chr3 149249471 149250554 -78274024 - MER11C LTR ERVK 0 1071 1 343 235 103 98 chr3 149250697 149250803 -78273775 - L1MC4 LINE L1 -2 8040 7893 223 231 0 0 chr3 149250803 149250842 -78273736 + (TCCA)n Simple_repeat Simple_repeat 3 41 0 343 235 103 98 chr3 149250842 149250901 -78273677 - L1MC4 LINE L1 -149 7893 7836 11938 43 3 0 chr3 149251772 149254019 -78270559 - L1PA5 LINE L1 -1 6153 3903 706 284 30 22 chr3 149254510 149254916 -78269662 - L1ME LINE L1 -573 5597 5186 461 253 81 0 chr3 149255563 149255761 -78268817 - L1ME LINE L1 -974 5172 4959 357 195 37 12 chr3 149255851 149255933 -78268645 + L1MB8 LINE L1 23 106 -6753 * 5745 245 99 28 chr3 149255927 149258041 -78266537 + L1MB8 LINE L1 2942 4904 -2085 1698 189 0 17 chr3 149258041 149258342 -78266236 + AluJb SINE Alu 1 296 -16 5745 245 99 28 chr3 149258342 149259449 -78265129 + L1MB8 LINE L1 4904 5931 -1058 2285 145 43 0 chr3 149259449 149259822 -78264756 - MLT1B LTR MaLR -1 389 1 5745 245 99 28 chr3 149259822 149259857 -78264721 + L1MB8 LINE L1 5931 5962 -1027 2307 143 8 6 chr3 149259857 149260221 -78264357 - MLT1A1 LTR MaLR 0 365 1 5745 245 99 28 chr3 149260221 149260726 -78263852 + L1MB8 LINE L1 5962 6984 -5 905 264 191 27 chr3 149260819 149261521 -78263057 + HAL1 LINE L1 1691 2507 0 515 244 34 28 chr3 149261557 149261733 -78262845 + L1M4b LINE L1 829 1005 -5942 1584 117 67 0 chr3 149261812 149262052 -78262526 - AluSx SINE Alu -36 276 21 1019 178 72 0 chr3 149262081 149262317 -78262261 - L1 LINE L1 -1713 4433 4181 21 36 0 0 chr3 149262807 149262835 -78261743 + AT_rich Low_complexity Low_complexity 1 28 0 395 308 69 69 chr3 149263293 149263553 -78261025 - L2 LINE L2 -1 3312 3053 244 222 97 0 chr3 149264520 149264592 -78259986 + MLT1K LTR MaLR 506 584 -4 373 246 120 27 chr3 149264660 149264843 -78259735 - MLT1J LTR MaLR -1 510 311 304 214 23 25 chr3 149264904 149264998 -78259580 - MLT1J2 LTR MaLR -306 141 59 367 307 28 40 chr3 149265409 149265585 -78258993 + L1M LINE L1 5255 5428 -2380 2774 249 64 22 chr3 149265599 149266365 -78258213 + L2 LINE L2 1984 2781 -533 888 236 149 16 chr3 149266378 149266859 -78257719 + MLT1G1 LTR MaLR 5 595 0 268 311 52 59 chr3 149266867 149267002 -78257576 + L2 LINE L2 2796 2929 -385 999 232 17 145 chr3 149267111 149267164 -78257414 + L2 LINE L2 2889 2947 -366 2230 119 10 0 chr3 149267164 149267474 -78257104 - AluSq SINE Alu 0 313 1 999 232 17 145 chr3 149267474 149267903 -78256675 + L2 LINE L2 2947 3309 -4 1213 259 96 8 chr3 149268503 149268901 -78255677 - LTR16A LTR ERVL -2 448 16 426 271 73 66 chr3 149268983 149269183 -78255395 - L1ME3A LINE L1 -207 5963 5766 2137 129 7 0 chr3 149269183 149269485 -78255093 - AluSx SINE Alu -8 304 1 426 271 73 66 chr3 149269485 149269738 -78254840 - L1ME3A LINE L1 -404 5766 5507 478 271 102 0 chr3 149269738 149269915 -78254663 - MLT1I LTR MaLR 0 409 215 661 148 57 0 chr3 149270192 149270314 -78254264 - MLT1H LTR MaLR -28 521 393 23 33 0 0 chr3 149271514 149271544 -78253034 + AT_rich Low_complexity Low_complexity 1 30 0 496 279 116 30 chr3 149271810 149272111 -78252467 + LTR16A LTR ERVL 17 343 -107 295 22 0 43 chr3 149272129 149272175 -78252403 + (GGGTG)n Simple_repeat Simple_repeat 3 46 0 1204 152 46 0 chr3 149272678 149272895 -78251683 + MER49 LTR ERV1 1 227 -696 4038 133 25 16 chr3 149272995 149273687 -78250891 + MER49 LTR ERV1 226 923 0 545 166 146 20 chr3 149274364 149274515 -78250063 + MLT1B LTR MaLR 2 171 -219 639 197 7 54 chr3 149274525 149274672 -78249906 + FLAM_A SINE Alu 3 142 0 631 207 167 0 chr3 149274717 149274891 -78249687 + MLT1B LTR MaLR 188 390 0 22 0 0 0 chr3 149275495 149275517 -78249061 + AT_rich Low_complexity Low_complexity 1 22 0 536 271 8 0 chr3 149276006 149276128 -78248450 + MIR SINE MIR 19 141 -67 855 152 10 78 chr3 149277290 149277494 -78247084 + MER3 DNA MER1_type 14 203 -6 271 311 123 8 chr3 149278373 149278495 -78246083 - L2 LINE L2 -556 2758 2623 4320 129 35 20 chr3 149278539 149279330 -78245248 + L1PB4 LINE L1 5340 6142 -14 25 0 0 0 chr3 149279330 149279355 -78245223 + AT_rich Low_complexity Low_complexity 1 25 0 212 340 22 45 chr3 149279421 149279689 -78244889 - L2 LINE L2 -926 2388 2127 469 220 89 65 chr3 149279698 149279866 -78244712 + MER69A DNA AcHobo 6 177 0 184 293 49 32 chr3 149279869 149279992 -78244586 - L2 LINE L2 -1217 2097 1973 445 204 292 0 chr3 149280432 149280569 -78244009 - MER5B DNA MER1_type 0 178 2 411 258 48 0 chr3 149280811 149280935 -78243643 - MIR SINE MIR -88 174 45 2289 96 7 0 chr3 149281127 149281420 -78243158 + AluSx SINE Alu 7 301 -11 1171 199 14 0 chr3 149282349 149282565 -78242013 + AluJb SINE Alu 80 298 -14 303 183 18 37 chr3 149282850 149283014 -78241564 + A-rich Low_complexity Low_complexity 5 165 0 210 138 0 50 chr3 149283040 149283120 -78241458 + (TAAAA)n Simple_repeat Simple_repeat 5 80 0 267 269 9 9 chr3 149283143 149283251 -78241327 + A-rich Low_complexity Low_complexity 3 110 0 361 291 48 10 chr3 149283304 149283407 -78241171 - MIR3 SINE MIR -49 159 53 426 290 174 0 chr3 149284035 149284173 -78240405 + MER5A DNA MER1_type 28 189 0 213 320 49 33 chr3 149285817 149285939 -78238639 + MER5A DNA MER1_type 66 189 0 1539 166 117 55 chr3 149285974 149286270 -78238308 + Charlie4a DNA MER1_type 1 340 -1621 2584 165 35 10 chr3 149286270 149286791 -78237787 + L1MA7 LINE L1 5758 6291 0 1539 166 117 55 chr3 149286791 149286971 -78237607 + Charlie4a DNA MER1_type 340 507 -1 706 244 30 89 chr3 149286983 149287254 -78237324 + MIR SINE MIR 3 257 -5 189 351 13 13 chr3 149287635 149287712 -78236866 - MIR SINE MIR -105 103 27 248 289 37 65 chr3 149287742 149287988 -78236590 - MER102a DNA MER1_type 0 330 92 22 0 0 0 chr3 149288287 149288309 -78236269 + AT_rich Low_complexity Low_complexity 1 22 0 290 91 0 0 chr3 149338759 149338803 -78185775 + L1MA4 LINE L1 5163 5206 -940 1232 185 4 0 chr3 149338805 149339064 -78185514 + L1P LINE L1 4960 5219 -927 * 3355 144 15 0 chr3 149339032 149339624 -78184954 + L1MA4 LINE L1 5327 5927 -373 695 155 115 6 chr3 149339716 149339890 -78184688 + L1MA4 LINE L1 5930 6122 -178 1095 124 62 0 chr3 149339895 149340088 -78184490 - L1PB1 LINE L1 -1 6150 5946 2168 118 37 6 chr3 149340272 149340621 -78183957 + L1PA16 LINE L1 5807 6166 0 700 265 43 14 chr3 149340676 149340955 -78183623 - L1ME4a LINE L1 -218 5903 5617 2504 68 0 7 chr3 149340983 149341291 -78183287 - AluY SINE Alu -5 306 1 284 271 192 0 chr3 149341310 149341461 -78183117 + MLT1L LTR MaLR 1 180 -435 1118 277 14 0 chr3 149341684 149341969 -78182609 - LTR16C LTR ERVL -134 357 69 1559 81 5 9 chr3 149341996 149342218 -78182360 - L1PA10 LINE L1 0 6168 5948 361 299 65 0 chr3 149343226 149343333 -78181245 - L2 LINE L2 0 3313 3200 733 88 88 34 chr3 149344867 149345015 -78179563 - THE1B-int LTR MaLR -1424 156 1 1949 150 47 33 chr3 149345015 149345374 -78179204 - THE1B LTR MaLR 0 364 1 11490 187 22 36 chr3 149345374 149347566 -78177012 + L1MB8 LINE L1 2775 4996 -1852 2159 129 10 10 chr3 149347566 149347877 -78176701 + AluSx SINE Alu 1 311 -1 11490 187 22 36 chr3 149347877 149348360 -78176218 + L1MB8 LINE L1 4996 5484 -1364 1724 91 143 11 chr3 149348360 149348625 -78175953 + AluY SINE Alu 2 301 0 11490 187 22 36 chr3 149348625 149348650 -78175928 + L1MB8 LINE L1 5484 5508 -1340 243 0 0 0 chr3 149348650 149348677 -78175901 + (TA)n Simple_repeat Simple_repeat 2 28 0 11490 187 22 36 chr3 149348677 149348945 -78175633 + L1MB8 LINE L1 5508 5698 -1150 7818 113 17 11 chr3 149349045 149350238 -78174340 + THE1B-int LTR MaLR 381 1580 0 2192 123 48 28 chr3 149350238 149350595 -78173983 + THE1B LTR MaLR 1 364 0 1053 115 52 0 chr3 149350595 149350786 -78173792 - L1M2 LINE L1 -4070 2779 2579 248 128 0 43 chr3 149350834 149350881 -78173697 - Alu SINE Alu -5 295 251 609 276 84 37 chr3 149350920 149351217 -78173361 - MLT1H LTR MaLR -198 351 41 2136 103 3 4 chr3 149352169 149352481 -78172097 + AluSc SINE Alu 1 294 -15 709 221 56 26 chr3 149352748 149352979 -78171599 + Charlie5 DNA MER1_type 2333 2570 -42 2078 176 27 0 chr3 149353149 149353525 -78171053 + L1MB8 LINE L1 6277 6662 -218 1153 88 76 0 chr3 149353526 149353697 -78170881 + AluSg/x SINE Alu 106 289 -23 908 226 10 5 chr3 149353700 149353904 -78170674 + L1MB8 LINE L1 6676 6880 0 349 316 36 71 chr3 149353907 149354057 -78170521 - L2 LINE L2 -225 3047 2908 1941 134 0 0 chr3 149354057 149354348 -78170230 - AluSq SINE Alu -22 291 1 349 316 36 71 chr3 149354348 149354450 -78170128 - L2 LINE L2 -364 2908 2804 202 317 0 0 chr3 149354491 149354551 -78170027 + MIR SINE MIR 89 148 -60 2266 81 0 3 chr3 149354598 149354907 -78169671 - AluY SINE Alu -3 308 1 485 277 97 25 chr3 149354939 149355217 -78169361 - L2 LINE L2 -559 2755 2458 2146 94 0 3 chr3 149355973 149356270 -78168308 - AluSc SINE Alu -13 296 1 1333 162 0 5 chr3 149356397 149356607 -78167971 + AluSx SINE Alu 12 220 -92 344 136 17 0 chr3 149356804 149356863 -78167715 - MER5B DNA MER1_type 0 178 119 557 222 182 23 chr3 149356863 149357039 -78167539 - L1MB5 LINE L1 -287 5887 5684 * 1183 196 11 58 chr3 149357009 149357285 -78167293 + L1MB5 LINE L1 5902 6164 -10 934 130 0 0 chr3 149357298 149357436 -78167142 + AluSq/x SINE Alu 2 139 -173 287 343 14 27 chr3 149357453 149357599 -78166979 + MER5A DNA MER1_type 3 146 -43 1774 163 20 0 chr3 149357725 149358020 -78166558 + AluSx SINE Alu 1 301 -11 2074 193 129 7 chr3 149358301 149358751 -78165827 - MLT1E LTR MaLR 0 593 89 7913 42 5 0 chr3 149358751 149359718 -78164860 - L1P LINE L1 -896 5250 4279 561 156 9 18 chr3 149359746 149359855 -78164723 + LTR2B LTR ERV1 272 379 -111 1195 101 0 34 chr3 149359856 149360035 -78164543 - AluSc SINE Alu -136 173 1 1788 214 183 53 chr3 149360165 149360744 -78163834 + MLT1E1 LTR MaLR 1 654 0 2099 109 0 3 chr3 149360755 149361049 -78163529 + AluSc SINE Alu 1 293 -16 206 359 38 9 chr3 149361137 149361243 -78163335 - MIR3 SINE MIR -54 154 46 2195 103 0 0 chr3 149361416 149361717 -78162861 + AluSc SINE Alu 1 301 -8 358 333 42 42 chr3 149361721 149361937 -78162641 - MIR SINE MIR -46 216 1 1915 148 0 0 chr3 149361992 149362290 -78162288 + AluSx SINE Alu 5 302 -10 844 240 42 78 chr3 149362458 149362714 -78161864 + MLT1I LTR MaLR 87 331 -78 1789 140 25 4 chr3 149362714 149363016 -78161562 + AluSx SINE Alu 1 308 0 844 240 42 78 chr3 149363016 149363091 -78161487 + MLT1I LTR MaLR 331 407 -2 521 268 7 22 chr3 149363423 149363561 -78161017 - L2 LINE L2 0 3272 3137 3671 138 33 30 chr3 149363585 149364625 -78159953 - MER11A LTR ERVK 0 1266 1 926 285 125 43 chr3 149364625 149365290 -78159288 - L2 LINE L2 -209 3104 2339 1319 190 0 53 chr3 149365290 149365611 -78158967 - AluJo SINE Alu -8 304 1 926 285 125 43 chr3 149365611 149365842 -78158736 - L2 LINE L2 -974 2339 2128 898 121 8 0 chr3 149366670 149366802 -78157776 + AluSq/x SINE Alu 1 133 -179 1999 133 10 3 chr3 149366806 149367108 -78157470 + AluSq SINE Alu 1 304 -9 1117 191 4 48 chr3 149367153 149367270 -78157308 + MER58A DNA MER1_type 1 105 -2315 2620 123 78 0 chr3 149367270 149367667 -78156911 - MSTA LTR MaLR 0 428 1 1117 191 4 48 chr3 149367667 149367780 -78156798 + MER58A DNA MER1_type 105 221 -3 206 324 119 11 chr3 149367791 149367967 -78156611 + L3 LINE CR1 1180 1374 -203 4168 89 11 0 chr3 149367977 149368529 -78156049 + LTR6B LTR ERV1 1 558 0 22764 130 16 3 chr3 149368531 149371717 -78152861 + HERVS71 LTR ERV1 4 3230 -5748 14395 139 16 1 chr3 149371732 149374542 -78150036 + HERVS71 LTR ERV1 4870 7786 -1192 2223 120 0 3 chr3 149374539 149374856 -78149722 + HERVS71 LTR ERV1 8594 8909 -69 * 4549 49 11 0 chr3 149374856 149375408 -78149170 + LTR6B LTR ERV1 1 558 0 2061 102 14 0 chr3 149375665 149375959 -78148619 - AluSp SINE Alu -15 298 1 380 235 120 62 chr3 149376581 149376820 -78147758 - MLT1H LTR MaLR 0 595 248 1887 113 14 73 chr3 149376942 149377305 -78147273 - MER4A LTR ERV1 -2 662 263 586 99 0 126 chr3 149377305 149377372 -78147206 - MER4A LTR ERV1 -566 98 49 2081 97 0 27 chr3 149377372 149377670 -78146908 - AluSx SINE Alu -22 290 1 586 99 0 126 chr3 149377670 149377713 -78146865 - MER4A LTR ERV1 -615 49 2 472 258 110 6 chr3 149377713 149377876 -78146702 - MLT1H LTR MaLR -356 193 14 1580 100 153 0 chr3 149378180 149378429 -78146149 - AluSx SINE Alu -16 296 10 421 260 42 83 chr3 149378624 149378889 -78145689 + MLT1K LTR MaLR 173 426 -162 1990 131 7 0 chr3 149379012 149379318 -78145260 + AluSg SINE Alu 1 308 -2 1190 289 23 0 chr3 149379323 149379627 -78144951 + LTR16C LTR ERVL 164 474 -17 261 194 65 16 chr3 149379658 149379720 -78144858 + MLT1K LTR MaLR 518 582 -6 195 133 0 0 chr3 149380110 149380140 -78144438 + L2 LINE L2 3282 3311 -2 624 108 30 4 chr3 149380144 149380349 -78144229 + AluSx SINE Alu 2 295 -15 213 318 16 0 chr3 149381035 149381098 -78143480 - MIR SINE MIR 0 262 199 581 314 54 48 chr3 149381107 149381438 -78143140 - MLT1I LTR MaLR -8 401 69 285 250 125 27 chr3 149381525 149381637 -78142941 - MIR SINE MIR -137 125 3 335 254 68 17 chr3 149382021 149382139 -78142439 - MER58C DNA MER1_type 0 215 92 1460 211 37 28 chr3 149382157 149382512 -78142066 + L1MB5 LINE L1 5813 6170 -4 1292 206 18 4 chr3 149382525 149382802 -78141776 - AluJo SINE Alu -30 282 2 1741 140 3 46 chr3 149382969 149383276 -78141302 - AluJb SINE Alu -14 298 5 2114 135 0 0 chr3 149383438 149383742 -78140836 - AluSx SINE Alu -8 304 1 597 221 38 0 chr3 149383749 149383880 -78140698 - L1MB4 LINE L1 0 6180 6045 821 193 202 42 chr3 149384397 149384635 -78139943 - AluJo SINE Alu -36 276 1 433 318 58 43 chr3 149384635 149384660 -78139918 + L2 LINE L2 2692 2715 -599 1617 147 0 0 chr3 149384660 149384911 -78139667 + AluSq SINE Alu 1 251 -62 433 318 58 43 chr3 149384911 149385143 -78139435 + L2 LINE L2 2715 2953 -361 263 279 63 104 chr3 149385142 149385429 -78139149 - L2 LINE L2 -91 3181 2907 * 43077 52 7 1 chr3 149385531 149391650 -78132928 + L1PA4 LINE L1 1 6155 0 2101 130 0 0 chr3 149392070 149392371 -78132207 + AluSx SINE Alu 1 301 -11 1105 223 24 12 chr3 149392419 149392666 -78131912 - MLT1E1 LTR MaLR 0 654 405 2036 112 30 0 chr3 149392690 149392993 -78131585 + AluSx SINE Alu 1 312 0 225 197 183 73 chr3 149392997 149393134 -78131444 - MLT2C2 LTR ERVL -231 233 82 * 1089 187 98 8 chr3 149393014 149393260 -78131318 - MLT1E1 LTR MaLR -384 270 3 2339 76 3 0 chr3 149393545 149393847 -78130731 + AluY SINE Alu 1 303 -8 1299 219 50 32 chr3 149393852 149394231 -78130347 - MLT1C LTR MaLR 0 467 82 204 40 0 0 chr3 149394235 149394260 -78130318 + (TTTTC)n Simple_repeat Simple_repeat 5 29 0 2233 97 3 0 chr3 149394269 149394569 -78130009 - AluSp SINE Alu -12 301 1 541 172 32 0 chr3 149394569 149394662 -78129916 - MLT1C LTR MaLR -369 98 3 351 250 42 0 chr3 149394674 149394746 -78129832 + AluJ/FLAM SINE Alu 1 75 -227 1469 189 31 10 chr3 149394787 149395078 -78129500 + AluJo SINE Alu 6 302 -10 261 222 0 0 chr3 149395157 149395202 -78129376 + FLAM SINE Alu 78 122 -11 251 196 0 0 chr3 149395260 149395306 -78129272 - MLT1K LTR MaLR -111 477 432 293 278 111 16 chr3 149395359 149395485 -78129093 - MLT1K LTR MaLR -325 263 126 450 284 78 0 chr3 149396346 149396462 -78128116 - MER91C DNA MER1_type 0 140 16 1262 153 5 18 chr3 149396609 149396831 -78127747 - MER20 DNA MER1_type 0 219 1 946 187 0 48 chr3 149397220 149397407 -78127171 + AluJo SINE Alu 1 178 -134 3228 205 20 4 chr3 149397507 149398252 -78126326 - L1 LINE L1 -1095 5051 4295 1045 126 29 0 chr3 149398260 149398434 -78126144 + L1MA4 LINE L1 6110 6288 -12 2600 99 11 0 chr3 149398836 149399200 -78125378 + HERVK LTR ERVK 5156 5523 -1720 193 184 0 46 chr3 149399321 149399408 -78125170 + GA-rich Low_complexity Low_complexity 2 84 0 778 191 0 0 chr3 149399544 149399675 -78124903 + HERVK LTR ERVK 7058 7188 -55 515 221 24 0 chr3 149399682 149399809 -78124769 + SVA Other Other 885 1014 -372 681 135 10 0 chr3 149400226 149400322 -78124256 + MER30 DNA MER1_type 132 228 -2 247 369 10 0 chr3 149401487 149401590 -78122988 - MIR3 SINE MIR -2 206 103 186 43 0 0 chr3 149402644 149402667 -78121911 + (TTG)n Simple_repeat Simple_repeat 1 23 0 260 331 174 6 chr3 149403102 149403280 -78121298 + MIR SINE MIR 7 214 -48 296 323 133 71 chr3 149403690 149404027 -78120551 + L2 LINE L2 2909 3266 -6 399 171 14 0 chr3 149404622 149404692 -78119886 + MER117 DNA MER1_type 126 196 -1 193 286 0 65 chr3 149405020 149405097 -78119481 - L2 LINE L2 -528 2786 2715 2213 96 3 0 chr3 149405621 149405914 -78118664 + AluSp SINE Alu 1 294 -19 273 21 43 21 chr3 149406007 149406054 -78118524 + (TG)n Simple_repeat Simple_repeat 1 48 0 1461 258 69 49 chr3 149406059 149406841 -78117737 + L1MEd LINE L1 540 1378 -4862 204 324 81 18 chr3 149407866 149407977 -78116601 + L2 LINE L2 3145 3262 -10 865 149 0 7 chr3 149407998 149408139 -78116439 - FRAM SINE Alu -32 144 5 974 204 100 17 chr3 149408197 149408427 -78116151 + MIR SINE MIR 13 261 -1 415 278 118 86 chr3 149409601 149409914 -78114664 + L1ME4a LINE L1 5552 5874 -247 423 161 65 11 chr3 149410359 149410452 -78114126 + L1P LINE L1 4736 4833 -1313 6067 146 29 5 chr3 149410672 149411822 -78112756 + L1MA4A LINE L1 5127 6298 -5 749 263 86 0 chr3 149412145 149412331 -78112247 - MER3 DNA MER1_type -6 203 2 408 239 62 34 chr3 149412888 149413097 -78111481 + L1ME4a LINE L1 5656 5870 -251 * 1104 240 56 70 chr3 149413096 149413321 -78111257 + L1MC4 LINE L1 7466 7693 -349 1985 169 19 11 chr3 149413321 149413683 -78110895 + MLT1A1 LTR MaLR 1 365 0 1104 240 56 70 chr3 149413683 149413734 -78110844 + L1MC4 LINE L1 7693 7743 -299 1897 107 72 0 chr3 149413734 149414025 -78110553 + AluSx SINE Alu 1 312 0 1104 240 56 70 chr3 149414025 149414247 -78110331 + L1MC4 LINE L1 7743 7958 -84 4695 90 3 5 chr3 149414382 149415017 -78109561 + HERVE LTR ERV1 4542 5175 -2638 2139 192 108 4 chr3 149415017 149416642 -78107936 - SATR1 Satellite Satellite 0 1793 1 1980 151 110 42 chr3 149416660 149417164 -78107414 - SATR1 Satellite Satellite 0 538 1 821 230 282 3 chr3 149417192 149417522 -78107056 - SATR1 Satellite Satellite -1 469 48 1234 131 27 23 chr3 149417526 149417747 -78106831 - AluSq SINE Alu -91 222 1 681 226 56 0 chr3 149419639 149419834 -78104744 + MER6B DNA MER2_type 5 210 0 378 234 76 55 chr3 149419939 149420084 -78104494 - MER5B DNA MER1_type -6 172 25 1937 113 0 72 chr3 149420234 149420569 -78104009 - AluSp SINE Alu 0 313 3 270 252 105 35 chr3 149420576 149420719 -78103859 - HsTC2 DNA Tc2 -113 1785 1633 1062 240 8 77 chr3 149420757 149420940 -78103638 + L1MA4 LINE L1 5767 5910 -390 1647 157 0 4 chr3 149420940 149421221 -78103357 + AluSx SINE Alu 1 280 -32 1062 240 8 77 chr3 149421221 149421428 -78103150 + L1MA4 LINE L1 5910 6130 -170 2046 108 3 3 chr3 149421508 149421814 -78102764 - AluSp SINE Alu -7 306 1 2954 237 30 48 chr3 149421859 149422846 -78101732 + L1MB3 LINE L1 4818 5821 -362 1778 141 3 28 chr3 149422846 149423166 -78101412 + AluSx SINE Alu 1 312 0 2954 237 30 48 chr3 149423166 149423283 -78101295 + L1MB3 LINE L1 5821 5939 -244 1769 138 35 0 chr3 149423283 149423566 -78101012 + AluSx SINE Alu 3 295 -17 2954 237 30 48 chr3 149423566 149423818 -78100760 + L1MB3 LINE L1 5939 6153 -30 31 0 0 0 chr3 149423838 149423869 -78100709 + AT_rich Low_complexity Low_complexity 1 31 0 3169 201 21 63 chr3 149424331 149425343 -78099235 + LTR5 LTR ERVK 1 969 0 290 360 51 19 chr3 149425669 149425883 -78098695 - MIR SINE MIR -10 252 32 2018 120 0 7 chr3 149426277 149426586 -78097992 + AluSg SINE Alu 1 307 -3 276 269 60 60 chr3 149426948 149427082 -78097496 + L2 LINE L2 3139 3272 0 2108 100 0 3 chr3 149427143 149427444 -78097134 - AluY SINE Alu -11 300 1 1145 215 205 47 chr3 149429166 149430591 -78093987 - SATR1 Satellite Satellite -1 1650 1 1044 220 297 17 chr3 149430628 149431690 -78092888 - SATR1 Satellite Satellite -1 1358 1 1443 245 121 31 chr3 149431720 149433299 -78091279 - SATR1 Satellite Satellite -3 1719 1 21 36 0 0 chr3 149433345 149433373 -78091205 + AT_rich Low_complexity Low_complexity 1 28 0 318 225 12 58 chr3 149433390 149433563 -78091015 + (TTA)n Simple_repeat Simple_repeat 2 166 0 29344 96 11 12 chr3 149433662 149437729 -78086849 + HERVE LTR ERV1 1108 5172 -2641 1974 196 116 11 chr3 149437729 149438646 -78085932 - SATR1 Satellite Satellite 0 1013 1 1495 194 14 3 chr3 149438746 149439029 -78085549 - AluSx SINE Alu -26 286 1 340 255 43 75 chr3 149439040 149439228 -78085350 - L1MC5 LINE L1 -44 7917 7736 482 258 152 0 chr3 149439382 149439533 -78085045 - MER5A DNA MER1_type -1 188 15 611 260 134 14 chr3 149439729 149439794 -78084784 - MLT1D LTR MaLR 0 484 428 1765 166 7 7 chr3 149439794 149440102 -78084476 + AluSx SINE Alu 1 308 -4 611 260 134 14 chr3 149440102 149440297 -78084281 - MLT1D LTR MaLR -56 428 193 1991 98 34 8 chr3 149440314 149440664 -78083914 + LTR7 LTR ERV1 1 448 -2 15829 100 34 16 chr3 149440666 149443484 -78081094 + HERVH LTR ERV1 1 2992 -4721 2073 113 6 12 chr3 149443470 149443774 -78080804 + HERVH LTR ERV1 3140 3441 -4272 63378 65 4 6 chr3 149443774 149451597 -78072981 + HERVE LTR ERV1 3 7811 -2 1722 216 42 39 chr3 149451686 149452094 -78072484 + LTR2 LTR ERV1 41 449 0 4044 93 4 0 chr3 149452094 149452644 -78071934 + HERVH LTR ERV1 3442 3993 -3720 4333 145 0 12 chr3 149452646 149453249 -78071329 + HERVH LTR ERV1 4488 5084 -2629 9047 43 5 2 chr3 149453249 149454317 -78070261 + MER11C LTR ERVK 1 1071 0 4333 145 0 12 chr3 149454317 149454383 -78070195 + HERVH LTR ERV1 5084 5149 -2564 1284 117 63 0 chr3 149454384 149454590 -78069988 + HERVH LTR ERV1 5600 5818 -1895 2306 88 53 13 chr3 149454590 149454966 -78069612 + HERVH LTR ERV1 7323 7713 0 2310 103 128 5 chr3 149454967 149455365 -78069213 + LTR7 LTR ERV1 2 448 -2 2246 107 3 0 chr3 149455377 149455667 -78068911 - AluSp SINE Alu -20 293 3 557 232 55 33 chr3 149455677 149455858 -78068720 - MLT1D LTR MaLR -320 185 1 192 366 75 37 chr3 149457044 149457178 -78067400 - L2 LINE L2 -15 3257 3119 1963 137 6 42 chr3 149457200 149457513 -78067065 + AluSx SINE Alu 1 302 -10 714 136 80 8 chr3 149457927 149458052 -78066526 + THE1B LTR MaLR 196 329 -35 2346 100 3 3 chr3 149458614 149458923 -78065655 - AluY SINE Alu 0 311 3 258 136 0 0 chr3 149459067 149459111 -78065467 + (GA)n Simple_repeat Simple_repeat 1 44 0 2198 123 3 10 chr3 149459418 149459718 -78064860 - AluSg SINE Alu -12 298 1 1136 153 14 28 chr3 149459795 149460011 -78064567 + MER73 LTR ERVL 432 644 0 231 287 0 69 chr3 149460499 149460556 -78064022 - MER5B DNA MER1_type -81 97 48 835 165 0 0 chr3 149460556 149460689 -78063889 + FLAM_A SINE Alu 1 133 0 231 287 0 69 chr3 149460689 149460732 -78063846 - MER5B DNA MER1_type -130 48 4 231 235 20 0 chr3 149460746 149460797 -78063781 + MLT1F LTR MaLR 1 52 -490 404 189 0 0 chr3 149460811 149460885 -78063693 - MER66B LTR ERV1 -412 74 1 795 146 0 8 chr3 149461246 149461376 -78063202 + FLAM_C SINE Alu 1 129 -4 1872 148 3 43 chr3 149461557 149461735 -78062843 - AluSx SINE Alu 0 312 151 2440 81 0 3 chr3 149461735 149462033 -78062545 - AluY SINE Alu -14 297 1 1872 148 3 43 chr3 149462033 149462179 -78062399 - AluSx SINE Alu -161 151 1 442 240 16 88 chr3 149462905 149463041 -78061537 + MER5B DNA MER1_type 2 138 -51 2003 158 0 0 chr3 149463041 149463338 -78061240 - AluJo SINE Alu -13 299 3 442 240 16 88 chr3 149463338 149463387 -78061191 + MER5B DNA MER1_type 138 189 0 378 290 11 5 chr3 149463401 149463550 -78061028 - MER5A DNA MER1_type 0 178 30 1252 227 110 20 chr3 149463954 149464026 -78060552 + MLT1C LTR MaLR 6 70 -397 2071 147 7 0 chr3 149464026 149464325 -78060253 + AluSx SINE Alu 1 301 -11 1252 227 110 20 chr3 149464325 149464661 -78059917 + MLT1C LTR MaLR 70 451 -16 2415 89 0 0 chr3 149464715 149465007 -78059571 + AluSp SINE Alu 1 292 -21 2124 117 6 46 chr3 149465228 149465554 -78059024 + AluSq SINE Alu 1 313 0 288 254 0 0 chr3 149465733 149465796 -78058782 + AluJ/FLAM SINE Alu 1 63 -239 3607 129 103 48 chr3 149465822 149466268 -78058310 + LTR1 LTR ERV1 1 506 -279 1903 65 0 4 chr3 149466268 149466498 -78058080 + AluY SINE Alu 16 244 -67 3607 129 103 48 chr3 149466498 149466795 -78057783 + LTR1 LTR ERV1 506 785 0 584 126 0 45 chr3 149466795 149466906 -78057672 + FLAM_C SINE Alu 38 143 0 862 198 0 6 chr3 149466920 149467082 -78057496 + FRAM SINE Alu 3 163 -3 1862 146 0 55 chr3 149467634 149467995 -78056583 + AluSx SINE Alu 1 372 0 240 35 0 0 chr3 149467995 149468024 -78056554 + (CA)n Simple_repeat Simple_repeat 2 30 0 1820 206 0 0 chr3 149468147 149468458 -78056120 - AluJo SINE Alu -1 311 1 3387 216 29 68 chr3 149468674 149469682 -78054896 + LTR5 LTR ERVK 1 969 0 501 272 82 13 chr3 149469992 149470150 -78054428 + MIR SINE MIR 79 247 -15 302 294 76 0 chr3 149470179 149470271 -78054307 + L2 LINE L2 3162 3260 -12 560 267 41 31 chr3 149470633 149470828 -78053750 + MIR SINE MIR 21 217 -45 2371 98 0 0 chr3 149470852 149471149 -78053429 + AluSq SINE Alu 1 297 -16 3225 134 39 4 chr3 149471236 149471745 -78052833 + MER1A DNA MER1_type 1 527 0 767 176 23 88 chr3 149471765 149471912 -78052666 + MER3 DNA MER1_type 8 138 -71 2025 142 10 0 chr3 149471912 149472200 -78052378 - AluSx SINE Alu -21 291 1 767 176 23 88 chr3 149472200 149472268 -78052310 + MER3 DNA MER1_type 138 209 0 767 221 95 0 chr3 149472417 149472607 -78051971 - MIR SINE MIR -6 256 49 186 194 0 0 chr3 149473473 149473535 -78051043 + CT-rich Low_complexity Low_complexity 1 62 0 2007 142 10 3 chr3 149475319 149475607 -78048971 + AluSg SINE Alu 1 290 -20 377 268 68 63 chr3 149475669 149475859 -78048719 - L2 LINE L2 -3 3310 3120 975 103 0 0 chr3 149475968 149476094 -78048484 - AluSq/x SINE Alu -185 127 2 1528 170 47 60 chr3 149476292 149476592 -78047986 + AluJo SINE Alu 1 296 -16 584 256 91 23 chr3 149476754 149476973 -78047605 + MIR SINE MIR 29 262 0 639 120 0 20 chr3 149477198 149477298 -78047280 - AluS SINE Alu -214 99 2 526 193 27 73 chr3 149477302 149477452 -78047126 - MLT1C LTR MaLR -284 183 41 1481 175 37 57 chr3 149477472 149477769 -78046809 - AluJo SINE Alu -21 291 1 2250 94 7 0 chr3 149478428 149478716 -78045862 + AluSc SINE Alu 1 290 -19 2338 89 3 7 chr3 149478810 149479113 -78045465 + AluSq SINE Alu 1 302 -11 181 161 0 0 chr3 149480292 149480323 -78044255 + L2 LINE L2 3280 3310 -3 204 271 10 31 chr3 149481388 149481484 -78043094 + C-rich Low_complexity Low_complexity 2 95 0 196 115 0 96 chr3 149482514 149482566 -78042012 - MIR SINE MIR -81 181 135 796 259 66 4 chr3 149482583 149482826 -78041752 + MIR SINE MIR 5 262 0 839 265 91 29 chr3 149482826 149483309 -78041269 - L2 LINE L2 -1 3312 2777 2072 128 7 3 chr3 149484732 149485028 -78039550 + AluSx SINE Alu 1 297 -15 417 271 202 19 chr3 149485924 149486290 -78038288 + LTR33A LTR ERVL 75 507 -16 2040 129 36 7 chr3 149486302 149486604 -78037974 - AluSx SINE Alu -1 311 1 633 168 50 8 chr3 149487128 149487247 -78037331 - FLAM_A SINE Alu -9 124 1 299 293 74 63 chr3 149487537 149487691 -78036887 + MIR SINE MIR 26 177 -68 2032 107 52 14 chr3 149487768 149487901 -78036677 + AluSx SINE Alu 1 127 -185 2294 117 0 0 chr3 149487901 149488201 -78036377 + AluSq SINE Alu 1 300 -13 2032 107 52 14 chr3 149488201 149488356 -78036222 + AluSx SINE Alu 127 300 -12 582 310 74 0 chr3 149488414 149488643 -78035935 - L1MD2 LINE L1 -351 6008 5763 247 311 0 14 chr3 149490487 149490561 -78034017 + MIR3 SINE MIR 82 154 -54 196 326 136 0 chr3 149490712 149490844 -78033734 - MIR SINE MIR -32 230 81 1742 182 6 10 chr3 149491120 149491433 -78033145 + AluJb SINE Alu 1 312 0 1881 161 3 10 chr3 149491538 149491849 -78032729 - AluSx SINE Alu -3 309 1 1171 154 6 11 chr3 149492023 149492205 -78032373 - AluSx SINE Alu -131 181 1 605 214 8 0 chr3 149492241 149492358 -78032220 + FLAM_A SINE Alu 7 124 -18 1173 104 12 0 chr3 149492437 149492610 -78031968 - MER30 DNA MER1_type -55 175 1 1935 129 13 55 chr3 149492742 149493051 -78031527 + AluSx SINE Alu 3 298 -14 1094 153 58 0 chr3 149493091 149493280 -78031298 + AluJo SINE Alu 106 305 -7 468 0 0 0 chr3 149493341 149493393 -78031185 + (TG)n Simple_repeat Simple_repeat 2 53 0 2204 109 3 0 chr3 149493393 149493677 -78030901 - AluSx SINE Alu -27 285 1 848 240 40 0 chr3 149495498 149495698 -78028880 + MER58A DNA MER1_type 1 208 -16 408 60 179 0 chr3 149496933 149497000 -78027578 + MADE1 DNA Mariner 2 80 0 712 118 0 0 chr3 149497542 149497644 -78026934 - AluSg/x SINE Alu -10 302 201 1999 105 0 22 chr3 149497645 149497956 -78026622 + AluSq SINE Alu 16 320 0 1789 138 32 11 chr3 149498035 149498318 -78026260 + AluSx SINE Alu 1 289 -23 2061 135 24 0 chr3 149499642 149499931 -78024647 + AluSx SINE Alu 1 296 -16 2262 119 3 0 chr3 149500311 149500613 -78023965 - AluSx SINE Alu -5 307 5 242 347 0 0 chr3 149501441 149501513 -78023065 - L2 LINE L2 -52 3261 3190 815 238 67 0 chr3 149501711 149501904 -78022674 - MER58A DNA MER1_type -18 206 1 2186 123 3 0 chr3 149502983 149503292 -78021286 - AluSx SINE Alu -2 310 1 2032 145 0 7 chr3 149503297 149503607 -78020971 - AluSq SINE Alu -5 308 1 22 0 0 0 chr3 149503611 149503633 -78020945 + AT_rich Low_complexity Low_complexity 1 22 0 1233 175 40 43 chr3 149503675 149504000 -78020578 - MER33 DNA MER1_type 0 324 1 2476 109 19 27 chr3 149504437 149504648 -78019930 - THE1B LTR MaLR 0 364 156 1987 160 0 0 chr3 149504648 149504948 -78019630 + AluSx SINE Alu 1 300 -12 2476 109 19 27 chr3 149504948 149505103 -78019475 - THE1B LTR MaLR -208 156 1 242 313 39 19 chr3 149505162 149505292 -78019286 - MIR SINE MIR -62 146 10 441 314 6 26 chr3 149505407 149505563 -78019015 + MER5B DNA MER1_type 17 169 -9 235 279 61 61 chr3 149505415 149505580 -78018998 - MER5A DNA MER1_type -24 165 1 * 29 28 0 0 chr3 149505593 149505629 -78018949 + AT_rich Low_complexity Low_complexity 1 36 0 488 192 29 0 chr3 149505629 149505733 -78018845 - L1MC4 LINE L1 -17 8025 7919 1861 230 70 2 chr3 149505752 149506225 -78018353 - L1MC4 LINE L1 -185 7857 7353 1867 153 0 33 chr3 149506670 149506977 -78017601 - AluJo SINE Alu -11 301 5 750 209 23 23 chr3 149507652 149507829 -78016749 + MLT1B LTR MaLR 1 177 -213 1082 200 9 31 chr3 149507829 149508054 -78016524 + AluJo SINE Alu 1 220 -92 2012 130 3 7 chr3 149508106 149508417 -78016161 + AluSx SINE Alu 1 310 0 264 253 0 13 chr3 149508419 149508494 -78016084 + (TA)n Simple_repeat Simple_repeat 1 74 0 528 227 31 133 chr3 149508494 149508750 -78015828 + MLT1C LTR MaLR 161 467 0 349 206 36 133 chr3 149508750 149508915 -78015663 - MIR SINE MIR -40 222 74 683 167 22 58 chr3 149509048 149509186 -78015392 - FLAM_A SINE Alu 0 133 1 187 316 51 0 chr3 149509415 149509494 -78015084 + L2 LINE L2 2442 2524 -790 4067 208 42 34 chr3 149509517 149509890 -78014688 - MER45B DNA AcHobo -541 1040 671 2182 122 3 10 chr3 149509890 149510202 -78014376 - AluSg SINE Alu 0 310 1 4067 208 42 34 chr3 149510202 149510728 -78013850 - MER45B DNA AcHobo -910 671 130 2076 130 14 0 chr3 149510728 149511020 -78013558 + AluSx SINE Alu 1 296 -16 4067 208 42 34 chr3 149511020 149511141 -78013437 - MER45B DNA AcHobo -1451 130 11 1927 138 44 13 chr3 149512052 149512350 -78012228 + AluSx SINE Alu 1 307 -5 668 297 61 0 chr3 149512350 149512562 -78012016 + MER82 DNA MER2_type 429 653 0 2323 92 3 10 chr3 149512774 149513080 -78011498 + AluSx SINE Alu 1 304 -8 1693 62 38 0 chr3 149514285 149514495 -78010083 - AluY SINE Alu 0 311 94 2326 108 0 0 chr3 149514813 149515108 -78009470 + AluSg SINE Alu 1 295 -15 11866 219 59 47 chr3 149515108 149515246 -78009332 - MER21B-int LTR ERV1 -789 3402 3267 2181 140 19 123 chr3 149515246 149515527 -78009051 - MSTA LTR MaLR 0 428 216 2198 116 3 0 chr3 149515527 149515820 -78008758 - AluSx SINE Alu -18 294 1 2181 140 19 123 chr3 149515820 149516016 -78008562 - MSTA LTR MaLR -212 216 1 11866 219 59 47 chr3 149516016 149516231 -78008347 - MER21B-int LTR ERV1 -924 3267 3056 1934 116 79 10 chr3 149516231 149516523 -78008055 - AluSx SINE Alu 0 312 1 11866 219 59 47 chr3 149516523 149516746 -78007832 - MER21B-int LTR ERV1 -1135 3056 2837 1993 131 44 0 chr3 149516746 149517044 -78007534 - AluSp SINE Alu -1 312 2 11866 219 59 47 chr3 149517044 149517827 -78006751 - MER21B-int LTR ERV1 -1354 2837 2065 2365 117 0 3 chr3 149517827 149518136 -78006442 - AluSq SINE Alu -5 308 1 11866 219 59 47 chr3 149518136 149520055 -78004523 - MER21B-int LTR ERV1 -2126 2065 79 2386 92 0 0 chr3 149520055 149520349 -78004229 - AluYa5 SINE Alu -17 294 1 11866 219 59 47 chr3 149520349 149520429 -78004149 - MER21B-int LTR ERV1 -4112 79 1 225 0 0 0 chr3 149520436 149520461 -78004117 + (CA)n Simple_repeat Simple_repeat 2 26 0 4215 186 50 10 chr3 149520465 149521281 -78003297 - MER21B LTR ERV1 -14 849 1 1916 154 76 73 chr3 149521347 149521952 -78002626 - MER4A LTR ERV1 0 465 1 1891 117 0 4 chr3 149522351 149522607 -78001971 + AluSx SINE Alu 12 266 -46 362 328 138 13 chr3 149523140 149523445 -78001133 + L2 LINE L2 725 1067 -2247 1695 139 102 0 chr3 149523494 149523768 -78000810 + AluSx SINE Alu 1 302 -10 2020 100 64 0 chr3 149523905 149524186 -78000392 - AluY SINE Alu -11 300 2 2041 160 108 60 chr3 149524241 149524528 -78000050 - MLT1D LTR MaLR 0 505 184 2349 106 0 0 chr3 149524528 149524820 -77999758 - AluSq SINE Alu -21 292 1 2041 160 108 60 chr3 149524820 149525014 -77999564 - MLT1D LTR MaLR -321 184 1 247 246 96 90 chr3 149525042 149525066 -77999512 + L2 LINE L2 1797 1819 -1495 2084 152 3 0 chr3 149525066 149525376 -77999202 - AluSp SINE Alu -2 311 1 247 246 96 90 chr3 149525376 149525518 -77999060 + L2 LINE L2 1819 1964 -1350 332 260 65 39 chr3 149525772 149525926 -77998652 - L1ME3A LINE L1 -44 6126 5969 268 177 0 5 chr3 149525947 149526004 -77998574 - L1MC1 LINE L1 -1 6332 6280 1988 125 0 4 chr3 149526004 149526276 -77998302 + AluSg SINE Alu 1 271 -39 268 177 0 5 chr3 149526276 149526287 -77998291 - L1MC1 LINE L1 -53 6280 6270 592 160 17 0 chr3 149526290 149526409 -77998169 + GA-rich Low_complexity Low_complexity 4 124 0 2856 144 12 23 chr3 149526409 149526924 -77997654 - L1MC1 LINE L1 -42 6291 5783 1969 150 0 3 chr3 149526938 149527245 -77997333 - AluSx SINE Alu 0 306 1 281 220 211 0 chr3 149527592 149527701 -77996877 - MLT1J2 LTR MaLR -67 383 252 2613 88 103 7 chr3 149528386 149528795 -77995783 - LTR7 LTR ERV1 -2 448 1 2254 108 48 13 chr3 149528795 149529174 -77995404 - HERVH LTR ERV1 0 7713 7322 1316 134 18 5 chr3 149529172 149529389 -77995189 - HERVH LTR ERV1 -1894 5819 5600 * 4169 148 1 1 chr3 149529390 149530052 -77994526 - HERVH LTR ERV1 -2564 5149 4488 3334 97 4 6 chr3 149530054 149530549 -77994029 - HERVH LTR ERV1 -3720 3993 3500 839 142 20 0 chr3 149530548 149530696 -77993882 - HERVH LTR ERV1 -4423 3290 3140 * 18860 113 14 12 chr3 149530690 149533673 -77990905 - HERVH LTR ERV1 -4726 2987 1 2871 100 11 35 chr3 149533675 149534134 -77990444 - LTR7 LTR ERV1 -2 448 1 1203 208 121 30 chr3 149534588 149534970 -77989608 - MLT1C LTR MaLR 0 505 39 6680 118 11 19 chr3 149534970 149535947 -77988631 - LTR5 LTR ERVK 0 969 1 1203 208 121 30 chr3 149535947 149535990 -77988588 - MLT1C LTR MaLR -466 39 1 3992 188 23 39 chr3 149536322 149537120 -77987458 - LTR1 LTR ERV1 0 785 1 2340 88 7 0 chr3 149537960 149538254 -77986324 + AluY SINE Alu 1 296 -15 801 143 0 50 chr3 149538627 149538767 -77985811 - FLAM_C SINE Alu 0 133 1 862 187 16 64 chr3 149538775 149538962 -77985616 + AluJo SINE Alu 112 289 -23 2033 135 7 7 chr3 149538972 149539276 -77985302 + AluSg SINE Alu 2 305 -5 181 316 133 38 chr3 149539276 149539434 -77985144 - L2 LINE L2 -87 3226 3054 203 296 0 0 chr3 149539572 149539626 -77984952 + MIR SINE MIR 203 256 -6 207 0 0 0 chr3 149540997 149541020 -77983558 + (TA)n Simple_repeat Simple_repeat 1 23 0 847 102 0 0 chr3 149541020 149541128 -77983450 - AluSx SINE Alu -9 300 193 1130 96 7 7 chr3 149541129 149541275 -77983303 - AluSx SINE Alu -167 146 1 1359 202 29 62 chr3 149541280 149541641 -77982937 - L1MB8 LINE L1 -4 6174 5827 2099 122 3 7 chr3 149541641 149541937 -77982641 - AluSx SINE Alu -17 295 1 1359 202 29 62 chr3 149541937 149541995 -77982583 - L1MB8 LINE L1 -351 5827 5769 327 49 0 0 chr3 149542730 149542771 -77981807 + (TTCC)n Simple_repeat Simple_repeat 4 44 0 276 185 0 0 chr3 149542866 149542920 -77981658 + CT-rich Low_complexity Low_complexity 2 55 0 870 184 0 0 chr3 149542951 149543130 -77981448 + CT-rich Low_complexity Low_complexity 2 180 0 1939 157 20 3 chr3 149543133 149543439 -77981139 - AluSq SINE Alu -2 311 1 750 211 0 0 chr3 149543853 149543986 -77980592 - FLAM_C SINE Alu 0 133 1 1953 114 0 75 chr3 149544322 149544661 -77979917 + AluSq SINE Alu 1 316 0 2789 96 3 0 chr3 149545905 149546268 -77978310 - THE1B LTR MaLR 0 364 1 834 244 29 57 chr3 149546671 149546950 -77977628 - MLT1A2 LTR MaLR -17 357 87 319 316 65 7 chr3 149546972 149547111 -77977467 - MIR SINE MIR -73 189 43 349 384 28 9 chr3 149547191 149547402 -77977176 + L2 LINE L2 3099 3313 0 677 246 1 3 chr3 149548446 149549163 -77975415 + (TG)n Simple_repeat Simple_repeat 1 715 0 566 333 113 41 chr3 149550645 149551114 -77973464 - L2 LINE L2 -1 3271 2770 284 103 0 0 chr3 149551114 149551153 -77973425 + MADE1 DNA Mariner 1 39 -41 1892 147 13 20 chr3 149551153 149551452 -77973126 - AluSx SINE Alu -15 297 1 516 203 17 17 chr3 149551565 149551683 -77972895 + MER58B DNA MER1_type 210 327 -14 1499 211 0 18 chr3 149551880 149552155 -77972423 + AluJo SINE Alu 13 282 -30 996 136 0 0 chr3 149552189 149552351 -77972227 + (TA)n Simple_repeat Simple_repeat 1 162 0 1969 137 6 37 chr3 149552415 149552737 -77971841 + AluSx SINE Alu 1 312 0 1213 218 14 55 chr3 149552738 149552844 -77971734 + L1MB3 LINE L1 5810 5919 -264 1972 157 0 0 chr3 149552844 149553138 -77971440 + AluSx SINE Alu 7 300 -12 1213 218 14 55 chr3 149553138 149553390 -77971188 + L1MB3 LINE L1 5919 6153 -30 34 0 0 0 chr3 149553407 149553441 -77971137 + AT_rich Low_complexity Low_complexity 1 34 0 3515 208 21 63 chr3 149553904 149554916 -77969662 + LTR5 LTR ERVK 1 969 0 401 350 47 14 chr3 149555236 149555450 -77969128 - MIR SINE MIR -10 252 32 2090 111 0 37 chr3 149555844 149556156 -77968422 + AluSg SINE Alu 1 287 -23 364 222 20 10 chr3 149557307 149557406 -77967172 + L1M4 LINE L1 4623 4722 -1424 345 254 74 42 chr3 149557438 149557655 -77966923 - L1M4 LINE L1 -3201 2945 2722 206 71 0 71 chr3 149557660 149557702 -77966876 + (T)n Simple_repeat Simple_repeat 1 39 0 918 179 24 6 chr3 149607760 149607928 -77916650 + AluJo SINE Alu 50 220 -92 231 122 0 82 chr3 149607928 149607977 -77916601 + Alu SINE Alu 86 130 -172 3142 178 95 36 chr3 149609084 149610124 -77914454 - L1MB8 LINE L1 -6 6172 5072 255 219 41 0 chr3 149610155 149610228 -77914350 - L1MB8 LINE L1 -1059 5087 5012 21 36 0 0 chr3 149610644 149610672 -77913906 + AT_rich Low_complexity Low_complexity 1 28 0 230 352 121 0 chr3 149610718 149610809 -77913769 + MIR3 SINE MIR 2 103 -105 196 206 0 0 chr3 149610869 149610903 -77913675 + MIR SINE MIR 117 150 -112 195 279 0 0 chr3 149612399 149612442 -77912136 + MIR SINE MIR 12 54 -208 2068 118 17 0 chr3 149612826 149613113 -77911465 + AluSx SINE Alu 1 292 -20 1894 154 7 0 chr3 149613172 149613470 -77911108 + AluJb SINE Alu 1 300 -12 2204 130 0 9 chr3 149613985 149614300 -77910278 - AluSx SINE Alu 0 312 1 327 616 203 0 chr3 149614461 149614578 -77910000 + L1MC4 LINE L1 7630 7662 -380 1947 157 30 43 chr3 149614578 149614794 -77909784 - MLT1A1 LTR MaLR 0 365 155 2081 107 3 45 chr3 149614794 149615104 -77909474 - AluSx SINE Alu -15 297 1 1947 157 30 43 chr3 149615104 149615257 -77909321 - MLT1A1 LTR MaLR -210 155 1 327 616 203 0 chr3 149615257 149615435 -77909143 + L1MC4 LINE L1 7662 8042 0 2281 112 0 0 chr3 149615469 149615773 -77908805 + AluSg SINE Alu 1 304 -6 204 40 0 0 chr3 149616798 149616823 -77907755 + (T)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr3 149616843 149616867 -77907711 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr3 149617355 149617379 -77907199 + AT_rich Low_complexity Low_complexity 1 24 0 1989 147 17 0 chr3 149618558 149618851 -77905727 - AluSx SINE Alu -14 298 1 205 274 0 0 chr3 149618938 149619000 -77905578 + A-rich Low_complexity Low_complexity 1 62 0 306 272 11 65 chr3 149619683 149619775 -77904803 - L2 LINE L2 -18 3295 3209 2254 106 33 0 chr3 149620038 149620340 -77904238 + AluSx SINE Alu 1 312 0 340 271 203 0 chr3 149621334 149621452 -77903126 + MLT1G1 LTR MaLR 248 389 -206 185 308 0 77 chr3 149621536 149621614 -77902964 - L2 LINE L2 -19 3294 3223 2252 113 0 0 chr3 149621723 149622024 -77902554 - AluSg SINE Alu -8 302 2 1906 232 75 14 chr3 149622062 149622636 -77901942 - L1ME1 LINE L1 -34 6201 5593 244 245 157 49 chr3 149622752 149622956 -77901622 - L1ME1 LINE L1 -4296 2100 1875 328 211 0 13 chr3 149623389 149623465 -77901113 - MER116 DNA Mariner 0 80 6 1669 185 7 4 chr3 149623612 149623893 -77900685 - AluJb SINE Alu -30 282 1 1924 136 16 23 chr3 149624081 149624389 -77900189 + AluJo SINE Alu 1 306 -6 372 182 203 95 chr3 149624611 149624759 -77899819 + HAL1 LINE L1 8 171 -2336 850 214 92 16 chr3 149624973 149625352 -77899226 + HAL1 LINE L1 788 1195 -1312 331 264 25 0 chr3 149625437 149625558 -77899020 + L1ME3A LINE L1 5828 5951 -219 26 82 0 0 chr3 149625749 149625810 -77898768 + AT_rich Low_complexity Low_complexity 1 61 0 1247 251 110 26 chr3 149625965 149626500 -77898078 + HAL1 LINE L1 1380 1959 -548 508 147 0 110 chr3 149626506 149626615 -77897963 + AluJb SINE Alu 190 286 -26 2442 70 0 3 chr3 149626630 149626928 -77897650 + AluY SINE Alu 1 297 -14 2323 90 0 0 chr3 149627064 149627353 -77897225 + AluSx SINE Alu 15 303 -9 1816 147 3 42 chr3 149627839 149628152 -77896426 - AluJb SINE Alu -6 306 6 851 321 110 19 chr3 149628358 149628785 -77895793 + L3 LINE CR1 295 760 -817 2236 64 43 0 chr3 149629395 149629675 -77894903 - AluYa5 SINE Alu -19 292 1 331 254 35 35 chr3 149629707 149629821 -77894757 + L2 LINE L2 3196 3309 -4 269 333 68 15 chr3 149630184 149630316 -77894262 + MIR SINE MIR 86 224 -38 306 280 120 0 chr3 149631446 149631571 -77893007 + L2 LINE L2 1854 1993 -1321 3968 146 34 0 chr3 149631689 149632472 -77892106 - L1M LINE L1 -743 5403 4618 2635 200 33 9 chr3 149632472 149633380 -77891198 - L1 LINE L1 -3319 4246 3315 5688 113 49 9 chr3 149633889 149635023 -77889555 - L1PA15 LINE L1 -1 6164 4999 2138 137 17 0 chr3 149635345 149635645 -77888933 - AluSx SINE Alu -7 305 1 219 345 24 0 chr3 149636004 149636088 -77888490 - MIR SINE MIR -13 249 164 201 286 107 0 chr3 149636200 149636256 -77888322 + L2 LINE L2 3207 3268 -4 1624 204 0 23 chr3 149636321 149636620 -77887958 + AluJo SINE Alu 1 292 -20 379 308 95 9 chr3 149636666 149636887 -77887691 + L2 LINE L2 2033 2272 -1042 567 287 249 28 chr3 149636917 149637580 -77886998 - L2 LINE L2 0 3313 2474 687 313 126 55 chr3 149637581 149637770 -77886808 + L2 LINE L2 2287 2461 -811 1718 155 0 68 chr3 149637770 149638093 -77886485 - AluJo SINE Alu -11 301 1 687 313 126 55 chr3 149638093 149638683 -77885895 + L2 LINE L2 2461 3099 -173 2150 107 3 0 chr3 149639515 149639804 -77884774 + AluSg SINE Alu 1 290 -20 30 59 0 0 chr3 149640026 149640077 -77884501 + AT_rich Low_complexity Low_complexity 1 51 0 794 153 8 0 chr3 149640079 149640197 -77884381 - FLAM_C SINE Alu -14 119 1 985 183 72 48 chr3 149640345 149640596 -77883982 - AluJo SINE Alu 0 312 56 2305 146 41 85 chr3 149640604 149641146 -77883432 - MER41A LTR ERV1 -5 549 32 305 226 16 0 chr3 149641151 149641213 -77883365 - AluJo SINE Alu -239 63 1 311 197 0 59 chr3 149641412 149641503 -77883075 - MER58 DNA MER1_type 0 2420 128 309 221 115 0 chr3 149641677 149641781 -77882797 - LTR37A LTR ERV1 -22 404 289 2436 110 28 3 chr3 149641830 149642185 -77882393 + THE1B LTR MaLR 1 364 0 2059 68 15 136 chr3 149642185 149642581 -77881997 + THE1B-int LTR MaLR 1 348 -1232 319 233 0 0 chr3 149642780 149642840 -77881738 - MIR SINE MIR 0 262 203 230 56 28 0 chr3 149642967 149643003 -77881575 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 201 159 0 0 chr3 149643397 149643441 -77881137 + CT-rich Low_complexity Low_complexity 2 45 0 1666 189 7 13 chr3 149644228 149644535 -77880043 + AluJo SINE Alu 1 305 -7 297 0 0 0 chr3 149644539 149644572 -77880006 + (TA)n Simple_repeat Simple_repeat 2 34 0 225 0 0 0 chr3 149644571 149644596 -77879982 + (CA)n Simple_repeat Simple_repeat 2 26 0 * 2030 198 105 60 chr3 149645441 149646158 -77878420 + L1MC3 LINE L1 6098 6846 -939 2144 150 96 27 chr3 149646224 149646671 -77877907 - L1MB2 LINE L1 -1 6170 5693 2179 130 0 0 chr3 149646814 149647113 -77877465 - AluSx SINE Alu -13 299 1 667 149 91 0 chr3 149647131 149647252 -77877326 - FLAM_C SINE Alu -1 132 1 2617 55 0 0 chr3 149647256 149647566 -77877012 - AluY SINE Alu -1 310 1 709 201 41 6 chr3 149647582 149647751 -77876827 - L1MC2 LINE L1 -9 6335 6161 906 142 0 137 chr3 149647751 149647947 -77876631 - FRAM SINE Alu -144 168 1 463 96 0 21 chr3 149647947 149648041 -77876537 + (TG)n Simple_repeat Simple_repeat 2 93 0 2135 62 15 7 chr3 149648041 149648314 -77876264 - AluY SINE Alu -26 285 11 1152 226 141 16 chr3 149648428 149648919 -77875659 + L1ME3 LINE L1 5511 6062 -100 213 315 9 19 chr3 149648931 149649039 -77875539 + (TATATG)n Simple_repeat Simple_repeat 4 110 0 1577 91 0 10 chr3 149649080 149649288 -77875290 - AluY SINE Alu -25 286 81 21 0 0 0 chr3 149649365 149649386 -77875192 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr3 149649884 149649908 -77874670 + (CA)n Simple_repeat Simple_repeat 2 25 0 6186 91 1 8 chr3 149651845 149652650 -77871928 + THE1C-int LTR MaLR 722 1522 -58 5137 118 17 5 chr3 149652650 149653420 -77871158 - MER4E LTR ERV1 0 779 1 6186 91 1 8 chr3 149653420 149653479 -77871099 + THE1C-int LTR MaLR 1522 1580 0 889 105 38 0 chr3 149653479 149653612 -77870966 + THE1C LTR MaLR 1 138 -237 750 185 111 6 chr3 149653822 149653984 -77870594 + FAM SINE Alu 1 48 -1 323 278 129 5 chr3 149654451 149654728 -77869850 - L1MB2 LINE L1 -422 5699 5386 1732 118 76 11 chr3 149655524 149655808 -77868770 + AluSg SINE Alu 1 301 0 240 146 110 37 chr3 149656122 149656204 -77868374 + LTR36 LTR ERV1 1 88 -523 955 114 0 6 chr3 149656314 149656485 -77868093 - L1MB2 LINE L1 -235 5936 5789 1349 160 133 20 chr3 149656485 149656785 -77867793 + MSTD LTR MaLR 63 396 0 973 130 0 14 chr3 149657025 149657163 -77867415 - FRAM SINE Alu -19 157 22 211 341 123 7 chr3 149657295 149657433 -77867145 + L3 LINE CR1 342 495 -1082 209 254 102 0 chr3 149657558 149657617 -77866961 - L2 LINE L2 -7 3265 3201 1719 125 91 14 chr3 149657910 149658197 -77866381 + AluSg SINE Alu 1 309 -1 232 277 60 0 chr3 149658219 149658302 -77866276 + L1ME LINE L1 5731 5818 -344 251 206 0 50 chr3 149658400 149658475 -77866103 + AluJ/monomer SINE Alu 1 54 -249 667 306 107 58 chr3 149658584 149659051 -77865527 + L2 LINE L2 2345 2834 -480 1086 81 0 7 chr3 149659065 149659201 -77865377 - AluSp SINE Alu -178 135 1 394 350 57 36 chr3 149659349 149659629 -77864949 - L2 LINE L2 -41 3272 2987 393 258 79 32 chr3 149662831 149663022 -77861556 + MLT1J2 LTR MaLR 29 221 -188 584 152 0 11 chr3 149663617 149663709 -77860869 + AluJ/FLAM SINE Alu 7 97 -215 278 217 12 36 chr3 149663737 149663820 -77860758 + MER31-int LTR ERV1 1041 1121 -3815 1790 146 56 11 chr3 149663844 149664131 -77860447 + AluJo SINE Alu 1 300 -12 1278 157 0 5 chr3 149665182 149665405 -77859173 - AluJb SINE Alu 0 306 85 639 131 180 8 chr3 149665850 149665972 -77858606 - AluJb SINE Alu -9 303 161 644 213 112 92 chr3 149666083 149666397 -77858181 + MER31-int LTR ERV1 3784 4103 -833 283 172 0 47 chr3 149666500 149666540 -77858038 + MER31-int LTR ERV1 4149 4186 -750 3580 118 16 7 chr3 149666540 149667089 -77857489 + MER41A LTR ERV1 1 554 0 283 172 0 47 chr3 149667089 149667112 -77857466 + MER31-int LTR ERV1 4186 4209 -727 910 179 0 0 chr3 149667124 149667269 -77857309 + FRAM SINE Alu 1 40 0 2333 115 18 42 chr3 149667519 149667903 -77856675 - THE1C LTR MaLR 0 375 1 460 196 60 75 chr3 149668484 149668646 -77855932 + L1M4 LINE L1 3796 3956 -2190 2139 145 0 0 chr3 149668646 149668950 -77855628 + AluSx SINE Alu 1 304 -8 460 196 60 75 chr3 149668950 149668986 -77855592 + L1M4 LINE L1 3956 3991 -2155 1272 152 0 19 chr3 149669065 149669275 -77855303 - AluJo SINE Alu -106 206 1 235 146 62 0 chr3 149669275 149669323 -77855255 + MER2 DNA MER2_type 123 173 -172 764 237 55 4 chr3 149669422 149669658 -77854920 - L1M4 LINE L1 -1825 4321 4074 228 204 0 0 chr3 149669668 149669717 -77854861 - L1MDb LINE L1 -5586 823 775 295 157 0 0 chr3 149670540 149670591 -77853987 + MLT1G1 LTR MaLR 542 592 -3 267 298 12 0 chr3 149671699 149671783 -77852795 - MIR SINE MIR -25 237 153 2772 141 86 12 chr3 149671783 149672207 -77852371 + MER44D DNA MER2_type 1 526 -1961 2198 140 15 0 chr3 149672207 149672550 -77852028 + MER7A DNA MER2_type 1 346 0 2772 141 86 12 chr3 149672550 149672637 -77851941 + MER44D DNA MER2_type 526 605 0 913 184 0 37 chr3 149672691 149672854 -77851724 + AluJo SINE Alu 1 157 -155 32 26 0 0 chr3 149673143 149673182 -77851396 + AT_rich Low_complexity Low_complexity 1 39 0 1782 133 4 0 chr3 149673966 149674222 -77850356 + AluSx SINE Alu 49 305 -7 203 306 184 59 chr3 149675066 149675474 -77849104 - L2 LINE L2 -601 2713 2255 304 259 37 12 chr3 149675660 149675741 -77848837 + L2 LINE L2 3136 3218 -54 576 173 68 30 chr3 149676013 149676146 -77848432 - L1MC5 LINE L1 -1154 6807 6670 431 286 110 48 chr3 149676164 149676224 -77848354 - L1MC4a LINE L1 -1430 6378 6323 1775 166 13 10 chr3 149676224 149676525 -77848053 - AluJo SINE Alu -10 302 1 431 286 110 48 chr3 149676525 149676754 -77847824 - L1MC4a LINE L1 -1485 6323 6071 2950 230 54 60 chr3 149676913 149677736 -77846842 - L1MC4a LINE L1 -780 5366 4539 1222 130 20 0 chr3 149677736 149677936 -77846642 - L1PA16 LINE L1 -9 6157 5954 2950 230 54 60 chr3 149677936 149678007 -77846571 - L1MC4a LINE L1 -1607 4539 4469 2385 73 0 0 chr3 149678007 149678296 -77846282 - AluSx SINE Alu -23 289 1 2950 230 54 60 chr3 149678296 149679108 -77845470 - L1MC4a LINE L1 -1677 4469 4252 1746 154 41 10 chr3 149679816 149680109 -77844469 + AluJb SINE Alu 1 302 -10 818 210 72 5 chr3 149681443 149681638 -77842940 - MER3 DNA MER1_type -1 208 1 221 227 213 0 chr3 149681872 149681947 -77842631 - L2 LINE L2 0 3313 3223 2236 271 142 13 chr3 149682167 149683006 -77841572 - L2 LINE L2 -409 2905 1959 309 236 75 19 chr3 149683115 149683221 -77841357 - L1MC/D LINE L1 -910 5449 5338 664 197 15 7 chr3 149683392 149683529 -77841049 + FLAM_C SINE Alu 1 138 -5 882 113 21 0 chr3 149683529 149683670 -77840908 - MER47A DNA MER2_type -59 307 164 644 103 6 189 chr3 149683676 149683851 -77840727 + FLAM_C SINE Alu 1 143 0 794 181 0 13 chr3 149683860 149684009 -77840569 - MER47A DNA MER2_type -219 147 1 474 222 9 0 chr3 149684009 149684117 -77840461 - L1MC/D LINE L1 -878 5268 5160 1420 251 33 9 chr3 149684119 149684577 -77840001 - L1MC/D LINE L1 -1096 5050 4582 585 279 144 16 chr3 149684572 149685010 -77839568 + L1M4 LINE L1 3329 3822 -2324 * 864 128 0 0 chr3 149685398 149685604 -77838974 - AluJb SINE Alu 0 370 165 1582 142 0 0 chr3 149685604 149685830 -77838748 - AluJb SINE Alu -86 226 1 1437 97 25 63 chr3 149686397 149686534 -77838044 + MER30 DNA MER1_type 2 128 -102 2337 88 0 0 chr3 149686534 149686829 -77837749 + AluSx SINE Alu 1 295 -17 1437 97 25 63 chr3 149686829 149686929 -77837649 + MER30 DNA MER1_type 128 230 0 1301 120 52 7 chr3 149687244 149687535 -77837043 + Tigger2 DNA MER2_type 2451 2718 0 3611 181 100 12 chr3 149687535 149688283 -77836295 + MER21B LTR ERV1 20 833 -30 1983 144 3 10 chr3 149688447 149688752 -77835826 + AluJb SINE Alu 1 303 -9 190 296 74 0 chr3 149689138 149689192 -77835386 - L2 LINE L2 -76 3196 3139 1769 165 3 34 chr3 149689304 149689625 -77834953 + AluJo SINE Alu 1 311 -1 212 409 42 19 chr3 149689632 149689845 -77834733 - L2 LINE L2 -214 3058 2841 1973 84 87 31 chr3 149690583 149690869 -77833709 - AluY SINE Alu -9 302 1 574 191 184 14 chr3 149690971 149691253 -77833325 - HAL1 LINE L1 -134 2373 2044 207 0 0 0 chr3 149691345 149691368 -77833210 + (TTA)n Simple_repeat Simple_repeat 2 24 0 328 211 66 13 chr3 149691641 149691717 -77832861 - MIR3 SINE MIR -7 201 122 1469 158 20 64 chr3 149692244 149692542 -77832036 - AluJb SINE Alu -13 299 15 1102 193 34 4 chr3 149692637 149692875 -77831703 + L1MB7 LINE L1 5821 6065 -119 1077 211 0 5 chr3 149692880 149693070 -77831508 + AluJo SINE Alu 87 275 -37 205 88 29 0 chr3 149693175 149693209 -77831369 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr3 149694227 149694250 -77830328 + AT_rich Low_complexity Low_complexity 1 23 0 1317 161 3 91 chr3 149694335 149694620 -77829958 - AluSx SINE Alu -14 298 39 2080 110 17 7 chr3 149694920 149695221 -77829357 + AluSx SINE Alu 1 304 -8 443 205 43 6 chr3 149695878 149696007 -77828571 + L1MC4 LINE L1 6435 6582 -1422 25 65 0 0 chr3 149696021 149696067 -77828511 + AT_rich Low_complexity Low_complexity 1 46 0 323 304 101 0 chr3 149696506 149696656 -77827922 - MIR SINE MIR -73 189 23 285 353 0 0 chr3 149696667 149696752 -77827826 - L2 LINE L2 -26 3246 3162 2316 67 0 0 chr3 149697052 149697335 -77827243 + AluY SINE Alu 22 304 -7 2281 78 0 19 chr3 149699168 149699475 -77825103 + AluY SINE Alu 1 301 -10 376 235 12 12 chr3 149699712 149699797 -77824781 - FRAM/FAM SINE Alu -84 82 1 350 113 0 0 chr3 149699797 149699847 -77824731 + MLT1H LTR MaLR 500 549 0 496 323 48 41 chr3 149699856 149700147 -77824431 + L2 LINE L2 2826 3118 -195 531 181 42 90 chr3 149700150 149700294 -77824284 - FRAM SINE Alu -18 158 22 2255 79 0 50 chr3 149700379 149700696 -77823882 + AluY SINE Alu 1 301 -10 517 139 36 73 chr3 149700925 149701062 -77823516 + MER1B DNA MER1_type 4 135 -162 1195 141 6 0 chr3 149701217 149701394 -77823184 - AluSp SINE Alu -3 310 133 2169 93 0 45 chr3 149701401 149701712 -77822866 - AluSx SINE Alu -15 297 1 1807 145 64 0 chr3 149701715 149702012 -77822566 + LTR36 LTR ERV1 296 611 0 1155 266 93 7 chr3 149702066 149702498 -77822080 + L2 LINE L2 1632 2100 -1214 265 152 22 0 chr3 149702645 149702691 -77821887 - AluSx SINE Alu -26 276 230 1257 85 0 18 chr3 149702691 149702855 -77821723 - AluSx SINE Alu -132 180 20 473 250 77 61 chr3 149703645 149703841 -77820737 + MIR SINE MIR 10 208 -54 1569 165 12 0 chr3 149704592 149704847 -77819731 + AluJb SINE Alu 38 295 -17 894 186 228 5 chr3 149705368 149705583 -77818995 - AluJo SINE Alu -49 263 1 249 156 0 22 chr3 149705774 149705819 -77818759 + MIR SINE MIR 63 106 -156 2453 70 3 16 chr3 149706198 149706511 -77818067 - AluSx SINE Alu -3 309 1 408 217 11 97 chr3 149706827 149707002 -77817576 - L1ME3 LINE L1 -6 6156 5997 4272 177 47 25 chr3 149707597 149708556 -77816022 - L1MB7 LINE L1 -11 6173 5304 2404 92 0 3 chr3 149708628 149708932 -77815646 - AluSc SINE Alu -6 303 1 238 326 139 8 chr3 149709337 149709466 -77815112 - L2 LINE L2 -2 3270 3125 1066 173 0 0 chr3 149709611 149709784 -77814794 + FAM SINE Alu 1 173 -2 26 0 0 0 chr3 149710046 149710072 -77814506 + AT_rich Low_complexity Low_complexity 1 26 0 2254 110 3 7 chr3 149710078 149710387 -77814191 + AluSx SINE Alu 1 308 -4 2365 97 3 0 chr3 149710394 149710692 -77813886 + AluSx SINE Alu 1 299 -13 2345 59 49 0 chr3 149710692 149710979 -77813599 + AluY SINE Alu 1 301 -10 463 190 5 144 chr3 149711502 149711545 -77813033 - L1MA10 LINE L1 0 6334 6292 928 231 18 78 chr3 149711545 149711647 -77812931 - L1ME1 LINE L1 -24 6142 6035 1729 175 14 10 chr3 149711647 149711939 -77812639 + AluJb SINE Alu 9 301 -11 928 231 18 78 chr3 149711939 149712118 -77812460 - L1ME1 LINE L1 -131 6035 5878 408 103 11 92 chr3 149712125 149712212 -77812366 - MADE1 DNA Mariner 0 80 1 381 247 17 34 chr3 149712343 149712521 -77812057 + G-rich Low_complexity Low_complexity 6 180 0 256 271 13 33 chr3 149712531 149712682 -77811896 + (CGGGG)n Simple_repeat Simple_repeat 4 151 0 332 256 66 16 chr3 149713026 149713042 -77811536 + L1MD1 LINE L1 5870 5884 -358 1911 81 12 0 chr3 149713042 149713290 -77811288 + AluSx SINE Alu 58 308 -4 332 256 66 16 chr3 149713290 149713394 -77811184 + L1MD1 LINE L1 5884 5996 -246 * 1170 172 77 23 chr3 149713293 149713579 -77810999 + L1MB5 LINE L1 5892 6180 0 2365 97 0 7 chr3 149713589 149713899 -77810679 + AluSc SINE Alu 1 308 -1 794 196 49 31 chr3 149714002 149714226 -77810352 + L1MC3 LINE L1 5922 6149 -1636 1754 70 18 4 chr3 149715049 149715278 -77809300 + AluSp SINE Alu 18 249 -64 181 340 0 20 chr3 149715363 149715413 -77809165 + L2 LINE L2 3047 3095 -177 954 196 192 8 chr3 149715729 149715984 -77808594 - AluJo SINE Alu -10 302 1 1731 174 20 0 chr3 149716654 149716947 -77807631 + AluSx SINE Alu 4 302 -10 336 24 0 0 chr3 149716947 149716988 -77807590 + (TA)n Simple_repeat Simple_repeat 2 42 0 2252 113 0 3 chr3 149717060 149717362 -77807216 + AluSg SINE Alu 1 301 -9 3272 113 6 10 chr3 149717375 149717855 -77806723 + MER9 LTR ERVK 34 511 0 4767 84 15 18 chr3 149717855 149718519 -77806059 + HERVK9 LTR ERVK 1 662 -5254 31196 88 1 3 chr3 149718519 149722537 -77802041 + HERVK9 LTR ERVK 1625 5634 -282 2082 121 36 17 chr3 149722562 149722909 -77801669 + HERVK9 LTR ERVK 5635 5916 0 3182 122 30 10 chr3 149722909 149723350 -77801228 + MER9 LTR ERVK 1 455 -56 369 0 0 0 chr3 149723350 149723391 -77801187 + (TG)n Simple_repeat Simple_repeat 2 42 0 3182 122 30 10 chr3 149723391 149723450 -77801128 + MER9 LTR ERVK 455 511 0 643 214 0 29 chr3 149724012 149724101 -77800477 - AluJo SINE Alu -92 220 135 216 0 0 0 chr3 149724101 149724125 -77800453 + (CTTG)n Simple_repeat Simple_repeat 2 25 0 643 214 0 29 chr3 149724125 149724175 -77800403 - AluJo SINE Alu -177 135 85 255 71 0 48 chr3 149724175 149724217 -77800361 - AluSg/x SINE Alu -52 250 211 * 299 92 13 118 chr3 149724188 149724264 -77800314 + Alu SINE Alu 233 300 -1 2312 121 57 79 chr3 149724391 149724943 -77799635 - LTR35 LTR ERV1 -4 614 1 510 174 0 12 chr3 149725243 149725329 -77799249 - AluJo SINE Alu -226 86 2 2350 98 3 0 chr3 149725557 149725863 -77798715 - AluSx SINE Alu -5 307 1 483 258 161 0 chr3 149725953 149726108 -77798470 + MER5A DNA MER1_type 10 189 0 2226 66 0 31 chr3 149726309 149726640 -77797938 - AluY SINE Alu 0 326 5 876 165 0 0 chr3 149726646 149726779 -77797799 - FLAM_C SINE Alu 0 133 1 2216 108 24 0 chr3 149727060 149727357 -77797221 + AluSq SINE Alu 1 304 -9 247 88 0 0 chr3 149727362 149727396 -77797182 - U2 snRNA snRNA -154 34 1 488 301 117 53 chr3 149727421 149727763 -77796815 + L2 LINE L2 2909 3272 0 227 125 97 14 chr3 149727767 149727839 -77796739 + (TTAA)n Simple_repeat Simple_repeat 1 78 0 558 264 140 0 chr3 149728035 149728228 -77796350 + MIR SINE MIR 22 241 -21 805 243 49 26 chr3 149728297 149728523 -77796055 + L1ME3 LINE L1 5864 6094 -68 1488 184 3 20 chr3 149728529 149728822 -77795756 - AluSx SINE Alu -14 298 11 228 219 0 31 chr3 149728982 149729046 -77795532 - MLT1K LTR MaLR -18 570 509 315 230 53 88 chr3 149729244 149729445 -77795133 - MLT1K LTR MaLR -318 270 11 247 157 0 20 chr3 149729749 149729800 -77794778 + MIR3 SINE MIR 114 163 -45 1666 149 71 7 chr3 149729859 149730128 -77794450 + AluJb SINE Alu 1 286 -26 2208 103 0 0 chr3 149730209 149730513 -77794065 + AluSc SINE Alu 1 304 0 1157 241 65 35 chr3 149730520 149730923 -77793655 - L1MC4 LINE L1 0 8042 7628 * 2732 174 13 2 chr3 149730918 149731396 -77793182 + L1MB7 LINE L1 5508 5990 -194 277 229 72 0 chr3 149731443 149731526 -77793052 + Charlie8 DNA MER1_type 192 280 -2137 2155 129 0 3 chr3 149731674 149731976 -77792602 + AluJb SINE Alu 11 311 -1 2213 128 0 3 chr3 149732138 149732450 -77792128 + AluSx SINE Alu 1 311 -1 489 115 0 0 chr3 149732985 149733072 -77791506 + (TG)n Simple_repeat Simple_repeat 1 87 0 2126 130 29 21 chr3 149733278 149733734 -77790844 + LTR10E LTR ERV1 1 612 -21 434 233 53 8 chr3 149734309 149734442 -77790136 + L1MA7 LINE L1 6011 6149 -142 412 237 15 0 chr3 149735390 149735521 -77789057 + GA-rich Low_complexity Low_complexity 2 134 0 252 185 0 0 chr3 149735516 149735570 -77789008 + A-rich Low_complexity Low_complexity 3 56 0 * 317 213 156 16 chr3 149735681 149735803 -77788775 - L1ME LINE L1 -346 5818 5680 691 164 16 39 chr3 149735810 149735938 -77788640 + BC200 scRNA scRNA 3 127 -73 264 196 0 0 chr3 149735964 149736010 -77788568 - L1ME LINE L1 -482 5684 5639 1420 215 24 79 chr3 149736010 149736099 -77788479 + MLT2C1 LTR ERVL 2 94 -303 1771 168 10 10 chr3 149736099 149736391 -77788187 - AluJb SINE Alu -20 292 1 1420 215 24 79 chr3 149736391 149736719 -77787859 + MLT2C1 LTR ERVL 94 396 -1 627 274 104 64 chr3 149736722 149737193 -77787385 + HERVL-C1 LTR ERVL 4 493 -5161 * 3544 182 39 19 chr3 149737184 149737820 -77786758 + ERVL LTR ERVL 3212 3860 -1904 1250 201 0 5 chr3 149737821 149738040 -77786538 + ERVL LTR ERVL 4879 5096 -668 804 163 16 143 chr3 149738043 149738217 -77786361 + ERVL LTR ERVL 5522 5716 -48 2382 106 0 0 chr3 149738217 149738519 -77786059 - AluSg SINE Alu -8 302 1 1723 126 18 36 chr3 149738525 149738802 -77785776 - AluJo SINE Alu -19 293 22 804 163 16 143 chr3 149738802 149738865 -77785713 + ERVL LTR ERVL 5721 5735 -29 768 189 99 61 chr3 149738883 149739226 -77785352 - L1ME LINE L1 -699 5479 5118 1403 155 75 60 chr3 149739335 149739407 -77785171 + L1MB5 LINE L1 5826 5895 -285 2278 95 10 0 chr3 149739407 149739712 -77784866 + AluSx SINE Alu 1 308 -4 1403 155 75 60 chr3 149739712 149740001 -77784577 + L1MB5 LINE L1 5895 6180 0 2365 97 0 7 chr3 149740011 149740321 -77784257 + AluSc SINE Alu 1 308 -1 4989 169 56 12 chr3 149740424 149741412 -77783166 + L1MC3 LINE L1 5922 6952 -833 256 242 15 0 chr3 149741419 149741485 -77783093 + MLT1F1 LTR MaLR 35 101 -466 2751 166 71 29 chr3 149741489 149741739 -77782839 + L1MC3 LINE L1 7169 7407 -378 1784 189 0 0 chr3 149741739 149742041 -77782537 + AluJb SINE Alu 1 302 -10 2751 166 71 29 chr3 149742041 149742382 -77782196 + L1MC3 LINE L1 7407 7785 0 594 126 59 104 chr3 149742763 149742898 -77781680 + FLAM_C SINE Alu 5 133 0 291 197 40 26 chr3 149742906 149742982 -77781596 + L3 LINE CR1 1206 1282 -295 189 267 324 0 chr3 149743826 149743931 -77780647 + L2 LINE L2 2919 3057 -256 247 118 0 0 chr3 149744004 149744038 -77780540 - MER58B DNA MER1_type -1 340 307 * 1184 210 86 32 chr3 149744034 149744348 -77780230 + MER58B DNA MER1_type 11 341 0 474 264 22 33 chr3 149744353 149744535 -77780043 + L2 LINE L2 3134 3313 0 337 345 16 15 chr3 149746448 149746657 -77777921 + GA-rich Low_complexity Low_complexity 1 209 0 246 143 0 0 chr3 149746820 149746869 -77777709 + (CCG)n Simple_repeat Simple_repeat 2 50 0 21 0 0 0 chr3 149747387 149747408 -77777170 + AT_rich Low_complexity Low_complexity 1 21 0 2068 94 3 31 chr3 149747778 149748086 -77776492 - AluSg SINE Alu 0 300 1 1938 96 0 19 chr3 149748195 149748456 -77776122 - AluSc SINE Alu -53 256 1 641 157 36 29 chr3 149748742 149748882 -77775696 + L1M4 LINE L1 4986 5126 -1020 1931 150 0 3 chr3 149748894 149749187 -77775391 + AluSx SINE Alu 13 304 -8 1692 120 12 0 chr3 149749322 149749564 -77775014 - AluSx SINE Alu -10 302 58 1917 153 4 0 chr3 149749788 149750069 -77774509 - AluJb SINE Alu -30 282 1 995 103 0 22 chr3 149750446 149750582 -77773996 - AluJb SINE Alu -179 133 1 770 276 85 17 chr3 149750676 149751028 -77773550 - L1MEc LINE L1 -4580 1816 1441 45 34 0 0 chr3 149751029 149751088 -77773490 + AT_rich Low_complexity Low_complexity 1 59 0 583 216 0 0 chr3 149751128 149751230 -77773348 - AluSq/x SINE Alu -210 103 2 254 115 0 33 chr3 149751242 149751294 -77773284 - L1MB3 LINE L1 0 6252 6201 1802 191 0 3 chr3 149751294 149751597 -77772981 - AluJb SINE Alu -10 302 1 2108 97 19 0 chr3 149751624 149751768 -77772810 - AluSx SINE Alu -38 274 121 279 0 0 0 chr3 149751768 149751799 -77772779 + (TG)n Simple_repeat Simple_repeat 2 32 0 2108 97 19 0 chr3 149751799 149751923 -77772655 - AluSx SINE Alu -191 121 1 3926 193 86 30 chr3 149751924 149753226 -77771352 - L1MB3 LINE L1 -42 6210 1042 2389 82 7 3 chr3 149753765 149754071 -77770507 + AluSq SINE Alu 1 307 -6 1179 194 28 0 chr3 149754086 149754297 -77770281 - MER46A DNA MER2_type -19 217 1 875 129 8 15 chr3 149754902 149755034 -77769544 - FLAM_C SINE Alu -1 132 2 1724 186 3 3 chr3 149755477 149755768 -77768810 - AluJo SINE Alu -21 291 1 523 270 75 52 chr3 149755770 149756022 -77768556 - L2 LINE L2 -144 3169 2912 417 221 252 15 chr3 149756066 149756197 -77768381 - MER5A DNA MER1_type -1 188 27 * 2879 229 59 43 chr3 149756193 149756664 -77767914 - L2 LINE L2 -519 2795 2333 2257 108 3 19 chr3 149756664 149756979 -77767599 + AluSq SINE Alu 1 310 -3 2879 229 59 43 chr3 149756979 149756992 -77767586 - L2 LINE L2 -981 2333 2322 2088 116 0 35 chr3 149756992 149757303 -77767275 + AluSg SINE Alu 1 300 -10 2879 229 59 43 chr3 149757303 149757756 -77766822 - L2 LINE L2 -992 2322 1842 2407 82 0 10 chr3 149757951 149758255 -77766323 - AluY SINE Alu -10 301 1 23 0 0 0 chr3 149758263 149758286 -77766292 + AT_rich Low_complexity Low_complexity 1 23 0 783 171 8 8 chr3 149758286 149758415 -77766163 - FLAM_C SINE Alu -3 130 2 198 71 0 0 chr3 149758614 149758642 -77765936 + (T)n Simple_repeat Simple_repeat 1 28 0 2197 107 4 3 chr3 149758777 149759076 -77765502 - AluSp SINE Alu -13 300 12 323 268 102 16 chr3 149759214 149759341 -77765237 - L2 LINE L2 0 3313 3176 2025 110 7 13 chr3 149759409 149759719 -77764859 - AluSx SINE Alu -4 308 1 561 213 39 24 chr3 149759720 149759847 -77764731 - FLAM_A SINE Alu -2 131 3 1851 160 10 0 chr3 149760044 149760351 -77764227 - AluJo SINE Alu -2 310 1 764 181 16 0 chr3 149760371 149760498 -77764080 - FLAM_C SINE Alu -12 131 3 209 293 52 0 chr3 149760566 149760624 -77763954 - L2 LINE L2 -4 3268 3208 236 217 32 108 chr3 149760833 149760990 -77763588 - L1ME4a LINE L1 -111 6010 5866 872 159 236 0 chr3 149760990 149761172 -77763406 + MER46A DNA MER2_type 2 226 -10 1429 185 10 17 chr3 149761229 149761526 -77763052 - AluJo SINE Alu -17 295 1 1946 96 86 0 chr3 149761725 149762005 -77762573 + AluSx SINE Alu 1 304 -8 349 328 125 64 chr3 149762017 149762377 -77762201 + L2 LINE L2 2804 3185 -87 531 314 49 80 chr3 149762468 149762732 -77761846 + MIR SINE MIR 4 259 -3 359 263 69 15 chr3 149763483 149763631 -77760947 + MIR3 SINE MIR 1 156 -70 321 335 44 27 chr3 149763661 149763992 -77760586 + L2 LINE L2 2687 3060 -212 899 129 117 12 chr3 149764106 149764277 -77760301 + MER5A DNA MER1_type 1 189 0 847 232 45 10 chr3 149764562 149764851 -77759727 - AluY SINE Alu 0 301 3 197 250 177 31 chr3 149764941 149765037 -77759541 + MIR SINE MIR 86 195 -67 309 89 0 0 chr3 149765636 149765681 -77758897 + (TA)n Simple_repeat Simple_repeat 2 46 0 1023 107 13 19 chr3 149765818 149765977 -77758601 - AluSg/x SINE Alu -21 289 132 2074 123 0 3 chr3 149766636 149766944 -77757634 + AluSg SINE Alu 2 308 -2 1683 200 62 50 chr3 149766970 149767227 -77757351 + L1MC3 LINE L1 5589 5856 -1929 2066 73 56 3 chr3 149767227 149767514 -77757064 - AluSc SINE Alu -7 302 1 1683 200 62 50 chr3 149767514 149767741 -77756837 + L1MC3 LINE L1 5856 6079 -1706 3142 152 52 38 chr3 149767742 149768356 -77756222 - MER73 LTR ERVL 0 644 22 1898 139 3 26 chr3 149768356 149768665 -77755913 + AluSx SINE Alu 1 302 -10 264 196 0 0 chr3 149769126 149769172 -77755406 + L2 LINE L2 3251 3296 -17 224 243 108 0 chr3 149769181 149769255 -77755323 + MIR SINE MIR 33 114 -94 2382 67 3 0 chr3 149770425 149770723 -77753855 + AluSp SINE Alu 1 299 -14 324 160 79 47 chr3 149770741 149770867 -77753711 + L1MC4 LINE L1 1992 6984 -1338 335 326 97 82 chr3 149771106 149771373 -77753205 + L2 LINE L2 2210 2480 -834 186 143 18 143 chr3 149771417 149771473 -77753105 - L2 LINE L2 0 3313 3265 1636 136 62 84 chr3 149771640 149772046 -77752532 - Charlie1 DNA MER1_type -22 2739 2343 343 268 396 0 chr3 149772144 149772308 -77752270 + MIR SINE MIR 32 260 -2 241 258 15 15 chr3 149773176 149773242 -77751336 + MIR SINE MIR 86 151 -57 306 224 0 0 chr3 149773573 149773631 -77750947 - L2 LINE L2 -7 3265 3208 942 260 60 11 chr3 149773873 149774142 -77750436 + LTR16C LTR ERVL 210 491 0 2261 91 0 0 chr3 149774642 149774939 -77749639 + AluSg SINE Alu 1 297 -13 1357 156 43 23 chr3 149774939 149775240 -77749338 + L1MB8 LINE L1 5867 6173 -5 294 143 0 0 chr3 149775240 149775289 -77749289 + (TG)n Simple_repeat Simple_repeat 1 49 0 864 318 50 13 chr3 149775672 149776053 -77748525 - L2 LINE L2 -478 2836 2442 243 250 0 0 chr3 149776124 149776176 -77748402 - L2 LINE L2 0 3313 3262 219 286 18 0 chr3 149776245 149776301 -77748277 + L2 LINE L2 3001 3057 -215 311 269 151 82 chr3 149776463 149776624 -77747954 + L2 LINE L2 2918 3103 -169 3021 185 76 23 chr3 149776624 149777310 -77747268 + MER72 LTR ERV1 1 722 0 311 269 151 82 chr3 149777310 149777393 -77747185 + L2 LINE L2 3103 3179 -93 334 208 143 0 chr3 149777445 149777522 -77747056 - L2 LINE L2 -3 3310 3223 434 221 96 16 chr3 149777596 149777886 -77746692 - MLT1J2 LTR MaLR -44 406 67 416 284 6 65 chr3 149778166 149778335 -77746243 - MIR SINE MIR -14 248 90 200 169 102 17 chr3 149778830 149778889 -77745689 + MIR SINE MIR 87 150 -58 548 273 59 40 chr3 149779166 149779397 -77745181 + MIR SINE MIR 33 260 -2 278 281 18 32 chr3 149779716 149779854 -77744724 + MIR SINE MIR 46 180 -63 224 194 0 0 chr3 149780927 149780963 -77743615 + polypyrimidine Low_complexity Low_complexity 1 36 0 192 231 0 0 chr3 149781144 149781196 -77743382 + CT-rich Low_complexity Low_complexity 2 53 0 731 243 21 26 chr3 149781432 149781621 -77742957 + MIR SINE MIR 43 230 -32 332 75 0 19 chr3 149783669 149783722 -77740856 + (GA)n Simple_repeat Simple_repeat 1 52 0 965 130 0 19 chr3 149783751 149783913 -77740665 - FRAM SINE Alu -12 164 6 244 303 0 26 chr3 149783926 149784002 -77740576 + MIR SINE MIR 74 147 -61 626 237 203 48 chr3 149784017 149784312 -77740266 + MER102b DNA MER1_type 1 341 0 1535 179 3 20 chr3 149784475 149784771 -77739807 - AluJo SINE Alu -21 291 1 351 314 65 8 chr3 149784778 149784902 -77739676 - L2 LINE L2 -15 3257 3127 694 309 99 29 chr3 149785002 149785377 -77739201 + L1MC4a LINE L1 5536 5936 -1872 1678 151 3 41 chr3 149785393 149785710 -77738868 - AluJo SINE Alu -1 311 7 1340 138 0 0 chr3 149786264 149786460 -77738118 - AluSx SINE Alu -114 198 3 500 273 80 92 chr3 149786542 149786756 -77737822 + L3 LINE CR1 950 1160 -417 2136 73 0 60 chr3 149786756 149787072 -77737506 - AluY SINE Alu -8 303 7 500 273 80 92 chr3 149787072 149787183 -77737395 + L3 LINE CR1 1160 1271 -306 23 0 0 0 chr3 149787389 149787412 -77737166 + AT_rich Low_complexity Low_complexity 1 23 0 1710 242 62 23 chr3 149787876 149788477 -77736101 - MER21B LTR ERV1 -77 786 98 379 241 24 12 chr3 149788513 149788596 -77735982 - MER21B LTR ERV1 -765 98 15 2177 112 0 3 chr3 149788796 149789099 -77735479 + AluSx SINE Alu 1 302 -10 264 196 0 0 chr3 149789563 149789609 -77734969 + L2 LINE L2 3251 3296 -17 224 243 108 0 chr3 149789618 149789692 -77734886 + MIR SINE MIR 33 114 -94 2382 67 3 0 chr3 149790862 149791160 -77733418 + AluSp SINE Alu 1 299 -14 324 160 79 47 chr3 149791178 149791304 -77733274 + L1MC4 LINE L1 1992 6984 -1338 335 326 97 82 chr3 149791543 149791810 -77732768 + L2 LINE L2 2210 2480 -834 430 328 34 8 chr3 149791865 149791984 -77732594 - L2 LINE L2 0 3272 3151 1443 163 64 7 chr3 149792089 149792372 -77732206 + AluSq SINE Alu 2 300 -13 456 277 81 66 chr3 149792439 149792771 -77731807 - MLT1L LTR MaLR -34 581 245 706 208 10 83 chr3 149792771 149792963 -77731615 - MER5A DNA MER1_type -3 186 9 275 211 53 26 chr3 149793083 149793159 -77731419 - MLT1L LTR MaLR -536 79 2 229 79 79 0 chr3 149793159 149793197 -77731381 - L1MC/D LINE L1 -2083 5725 5685 766 252 53 56 chr3 149793204 149793541 -77731037 - L1MC/D LINE L1 -2192 5616 5281 279 287 115 25 chr3 149793740 149793897 -77730681 + L3 LINE CR1 659 829 -748 299 163 0 0 chr3 149793904 149793953 -77730625 - Alu SINE Alu 0 302 254 2231 91 3 0 chr3 149794265 149794563 -77730015 + AluSx SINE Alu 1 299 -13 293 359 35 7 chr3 149794825 149794967 -77729611 + MIR SINE MIR 6 151 -111 618 179 45 0 chr3 149794967 149795079 -77729499 + FLAM_A SINE Alu 1 117 -16 1989 87 7 28 chr3 149795211 149795528 -77729050 - AluY SINE Alu 0 313 3 1315 191 67 7 chr3 149795604 149795887 -77728691 - AluJo SINE Alu -12 300 1 251 385 10 10 chr3 149796005 149796109 -77728469 + L2 LINE L2 2554 2657 -657 2005 148 0 0 chr3 149796161 149796471 -77728107 - AluJb SINE Alu -2 310 1 314 136 0 17 chr3 149797303 149797362 -77727216 + (TCCC)n Simple_repeat Simple_repeat 1 58 0 391 246 0 63 chr3 149797362 149797425 -77727153 - L2 LINE L2 -6 3307 3254 2537 180 96 2 chr3 149797425 149797935 -77726643 + MER74A LTR ERVL 1 558 0 391 246 0 63 chr3 149797935 149797997 -77726581 - L2 LINE L2 -59 3254 3190 429 199 0 0 chr3 149798176 149798312 -77726266 + (CA)n Simple_repeat Simple_repeat 2 137 0 1940 121 0 33 chr3 149798556 149798861 -77725717 - AluSx SINE Alu -17 295 1 911 184 193 5 chr3 149798861 149799036 -77725542 - L1MD2 LINE L1 -6 6353 6128 261 0 0 0 chr3 149799036 149799065 -77725513 + (TG)n Simple_repeat Simple_repeat 2 30 0 911 184 193 5 chr3 149799065 149799107 -77725471 - L1MD2 LINE L1 -231 6128 6095 184 348 43 26 chr3 149799306 149799421 -77725157 + L2 LINE L2 1835 1951 -1363 242 250 42 14 chr3 149799426 149799498 -77725080 - L2 LINE L2 0 3272 3199 294 246 65 65 chr3 149799507 149799645 -77724933 - L2 LINE L2 -468 2846 2709 245 133 0 0 chr3 149799646 149799691 -77724887 - Alu SINE Alu -1 132 88 1258 182 4 9 chr3 149799692 149799917 -77724661 - AluJb SINE Alu -88 224 1 1402 248 152 26 chr3 149800252 149800744 -77723834 - MLT1K LTR MaLR -24 564 11 199 355 26 0 chr3 149800758 149800834 -77723744 - MIR SINE MIR -62 146 69 204 349 87 16 chr3 149801629 149801755 -77722823 - L2 LINE L2 -107 3165 3031 566 265 160 17 chr3 149801790 149802028 -77722550 + L2 LINE L2 3042 3313 0 326 330 17 28 chr3 149802824 149803003 -77721575 + (TATATG)n Simple_repeat Simple_repeat 1 177 0 359 294 112 28 chr3 149803433 149803516 -77721062 - MIR SINE MIR -59 203 128 2410 81 0 0 chr3 149803516 149803826 -77720752 + AluSx SINE Alu 1 310 -2 359 294 112 28 chr3 149803826 149803885 -77720693 - MIR SINE MIR -134 128 49 251 211 111 33 chr3 149805022 149805112 -77719466 + MLT1K LTR MaLR 490 586 -2 1111 305 72 8 chr3 149805378 149805902 -77718676 + MLT1K LTR MaLR 1 586 -2 577 258 62 0 chr3 149806004 149806132 -77718446 + MIR SINE MIR 27 162 -100 617 218 110 49 chr3 149806140 149806380 -77718198 - MIR SINE MIR 0 262 13 2084 75 14 4 chr3 149806480 149806800 -77717778 + AluSg SINE Alu 1 323 0 200 222 14 0 chr3 149807046 149807118 -77717460 + (TGAG)n Simple_repeat Simple_repeat 4 76 0 191 36 36 0 chr3 149807176 149807204 -77717374 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 219 235 15 0 chr3 149808622 149808690 -77715888 + (CA)n Simple_repeat Simple_repeat 2 70 0 180 0 0 0 chr3 149808756 149808776 -77715802 + (CA)n Simple_repeat Simple_repeat 2 21 0 271 197 30 61 chr3 149808833 149808899 -77715679 + MIR SINE MIR 82 145 -63 1747 149 3 14 chr3 149808905 149809200 -77715378 + AluJo SINE Alu 1 292 -20 1676 174 30 3 chr3 149809200 149809504 -77715074 + AluJb SINE Alu 1 312 0 764 145 8 0 chr3 149809539 149809656 -77714922 + FLAM_C SINE Alu 7 124 -19 2235 75 0 17 chr3 149809664 149809957 -77714621 - AluY SINE Alu -23 288 1 23 0 0 0 chr3 149809964 149809987 -77714591 + AT_rich Low_complexity Low_complexity 1 23 0 247 324 90 19 chr3 149810329 149810585 -77713993 + L2 LINE L2 2810 3083 -189 482 231 0 28 chr3 149810615 149810723 -77713855 - MIR SINE MIR -84 124 20 305 24 24 0 chr3 149810725 149810767 -77713811 + (TTTC)n Simple_repeat Simple_repeat 4 46 0 1933 157 3 0 chr3 149810769 149811075 -77713503 - AluJo SINE Alu 0 312 6 374 196 145 72 chr3 149811138 149811276 -77713302 - L1ME LINE L1 -370 5751 5604 276 315 90 0 chr3 149811292 149811403 -77713175 + L2 LINE L2 2552 2672 -642 274 301 104 52 chr3 149811465 149811658 -77712920 + MLT1H LTR MaLR 105 307 -242 * 296 235 78 87 chr3 149811649 149811764 -77712814 + MLT1H LTR MaLR 434 547 -2 22 0 0 0 chr3 149811808 149811830 -77712748 + AT_rich Low_complexity Low_complexity 1 22 0 342 351 30 8 chr3 149812090 149812224 -77712354 - MIR SINE MIR -103 159 23 250 202 0 3 chr3 149812297 149812357 -77712221 + MIR SINE MIR 61 120 -88 * 401 250 58 8 chr3 149812355 149812475 -77712103 + L2 LINE L2 3188 3313 0 247 263 204 7 chr3 149812634 149812771 -77711807 + MIR SINE MIR 93 256 -6 347 261 59 24 chr3 149813272 149813422 -77711156 - MIR SINE MIR -32 230 75 864 246 174 23 chr3 149813602 149814094 -77710484 - MLT1G1 LTR MaLR 0 555 1 249 138 0 69 chr3 149815162 149815220 -77709358 - MER5A DNA MER1_type -63 126 73 483 216 180 0 chr3 149815397 149815665 -77708913 + FLAM_A SINE Alu 3 290 0 293 310 103 83 chr3 149815713 149816013 -77708565 - L2 LINE L2 0 3272 2967 2137 113 3 0 chr3 149816688 149816989 -77707589 + AluSx SINE Alu 1 302 -10 221 304 152 36 chr3 149817034 149817146 -77707432 + MER5A DNA MER1_type 60 184 -5 203 298 36 36 chr3 149817074 149817158 -77707420 - MER5A DNA MER1_type -102 87 4 * 309 308 63 6 chr3 149817627 149817786 -77706792 - MER5A DNA MER1_type -21 168 1 887 118 15 7 chr3 149817945 149818080 -77706498 + AluJb SINE Alu 1 136 -176 325 279 69 61 chr3 149818179 149818426 -77706152 + MIR SINE MIR 2 250 -12 785 241 139 38 chr3 149818480 149818717 -77705861 + MIR SINE MIR 2 262 0 493 204 148 21 chr3 149819214 149819356 -77705222 - MIR SINE MIR -101 161 2 196 279 89 63 chr3 149819370 149819449 -77705129 + MIR3 SINE MIR 91 171 -37 591 221 110 0 chr3 149819605 149819759 -77704819 - MIR SINE MIR 0 262 92 575 305 27 9 chr3 149819761 149819984 -77704594 + LTR16A1 LTR ERVL 6 232 -225 1289 182 96 11 chr3 149819989 149820269 -77704309 + MLT1C LTR MaLR 1 304 -163 2487 61 0 0 chr3 149820383 149820693 -77703885 + AluY SINE Alu 1 310 -1 593 273 178 0 chr3 149820861 149821136 -77703442 + L2 LINE L2 2818 3141 -172 1592 235 128 15 chr3 149821576 149822081 -77702497 - MLT1G1 LTR MaLR -13 529 1 225 234 0 0 chr3 149822372 149822419 -77702159 - MIR SINE MIR -109 153 107 502 256 33 24 chr3 149822522 149822763 -77701815 + MER41B LTR ERV1 54 430 -205 243 286 146 6 chr3 149823616 149823787 -77700791 + L2 LINE L2 2590 2784 -530 1947 268 49 31 chr3 149823955 149824881 -77699697 + L2 LINE L2 2380 3309 -4 411 145 0 0 chr3 149824917 149825000 -77699578 + (CA)n Simple_repeat Simple_repeat 2 84 0 1900 150 0 0 chr3 149825025 149825311 -77699267 + AluSx SINE Alu 1 286 -26 216 204 23 0 chr3 149825330 149825374 -77699204 + (CAAA)n Simple_repeat Simple_repeat 2 46 0 1222 280 129 30 chr3 149825452 149825908 -77698670 + MLT1K LTR MaLR 4 520 -68 1599 181 9 29 chr3 149825908 149826223 -77698355 - AluJb SINE Alu -3 309 1 1222 280 129 30 chr3 149826223 149826291 -77698287 + MLT1K LTR MaLR 520 580 -8 186 43 0 0 chr3 149826847 149826870 -77697708 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 682 149 18 9 chr3 149826870 149826984 -77697594 - FRAM SINE Alu -27 149 35 1050 165 0 0 chr3 149826990 149827160 -77697418 + AluSg/x SINE Alu 129 298 -14 240 244 102 71 chr3 149827204 149827331 -77697247 - MIR3 SINE MIR -46 162 32 631 211 42 14 chr3 149827357 149827499 -77697079 + MLT1C LTR MaLR 310 455 -12 488 304 55 17 chr3 149827502 149827683 -77696895 - MER115 DNA AcHobo -150 543 356 1341 201 83 76 chr3 149827768 149828216 -77696362 - MER41B LTR ERV1 -39 596 146 615 254 76 54 chr3 149828264 149828488 -77696090 - MER115 DNA AcHobo -420 273 45 1457 261 68 56 chr3 149828619 149829193 -77695385 + L1ME2 LINE L1 5478 6058 -106 345 140 0 0 chr3 149829309 149829366 -77695212 + (TG)n Simple_repeat Simple_repeat 2 58 0 264 278 78 52 chr3 149829617 149829808 -77694770 - L2 LINE L2 -884 2430 2235 572 297 113 4 chr3 149829855 149830084 -77694494 + Charlie8 DNA MER1_type 20 273 -2144 201 39 0 0 chr3 149830127 149830153 -77694425 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 778 263 151 18 chr3 149830153 149830729 -77693849 - L2 LINE L2 -13 3300 2642 2365 75 3 0 chr3 149830759 149831067 -77693511 + AluSc SINE Alu 1 309 0 3153 132 64 63 chr3 149831091 149831738 -77692840 + MER51A LTR ERV1 2 640 0 4089 173 7 60 chr3 149831739 149831981 -77692597 - L1MB4 LINE L1 -19 6161 5908 2244 83 0 38 chr3 149831981 149832295 -77692283 + AluSq SINE Alu 1 302 -11 4089 173 7 60 chr3 149832295 149832652 -77691926 - L1MB4 LINE L1 -272 5908 5620 1774 180 0 3 chr3 149832652 149832957 -77691621 - AluJb SINE Alu -8 304 1 4089 173 7 60 chr3 149832957 149833224 -77691354 - L1MB4 LINE L1 -560 5620 5340 624 276 147 9 chr3 149833237 149833462 -77691116 - L2 LINE L2 -703 2611 2356 464 273 176 16 chr3 149833966 149834222 -77690356 - L2 LINE L2 -18 3295 2999 271 374 6 0 chr3 149834894 149835065 -77689513 + (CA)n Simple_repeat Simple_repeat 1 172 0 191 125 25 0 chr3 149835338 149835378 -77689200 + (CA)n Simple_repeat Simple_repeat 1 41 0 300 345 6 17 chr3 149835474 149835648 -77688930 + (CA)n Simple_repeat Simple_repeat 1 172 0 1060 165 0 0 chr3 149836169 149836339 -77688239 + FRAM SINE Alu 1 162 -14 7539 198 30 37 chr3 149836379 149837210 -77687368 + L1M4 LINE L1 16 852 -5794 1820 147 92 14 chr3 149837210 149837558 -77687020 + THE1C LTR MaLR 1 375 0 7539 198 30 37 chr3 149837558 149838028 -77686550 + L1M4 LINE L1 852 1324 -5322 1943 96 0 25 chr3 149838028 149838308 -77686270 + AluSg SINE Alu 1 273 -37 279 54 0 0 chr3 149838311 149838348 -77686230 + (CAAAA)n Simple_repeat Simple_repeat 3 39 0 7539 198 30 37 chr3 149838348 149838894 -77685684 + L1M4 LINE L1 1326 1858 -4788 1029 216 0 5 chr3 149838902 149839106 -77685472 + AluJo SINE Alu 1 203 -109 1875 146 0 29 chr3 149839160 149839469 -77685109 - AluJo SINE Alu -11 301 2 1211 191 29 7 chr3 149839485 149839758 -77684820 + L1M4 LINE L1 2711 2989 -3655 890 187 5 5 chr3 149839818 149840005 -77684573 - MER53 DNA DNA 0 189 3 234 196 22 0 chr3 149840018 149840064 -77684514 + Charlie8 DNA MER1_type 1378 1424 -993 180 265 31 0 chr3 149840206 149840304 -77684274 + CT-rich Low_complexity Low_complexity 1 101 0 206 352 11 34 chr3 149840305 149840393 -77684185 - L2 LINE L2 -1 3312 3227 330 263 59 51 chr3 149840437 149840555 -77684023 + MER5A DNA MER1_type 10 139 -50 259 270 70 52 chr3 149840451 149840566 -77684012 - MER5A DNA MER1_type -22 167 51 * 1937 96 31 38 chr3 149841663 149841954 -77682624 - AluSg SINE Alu -21 289 1 1087 201 19 106 chr3 149842864 149843223 -77681355 - MLT2D LTR ERVL -6 408 81 2066 133 0 0 chr3 149843226 149843528 -77681050 + AluSx SINE Alu 3 304 -8 1648 164 31 3 chr3 149843757 149844049 -77680529 + AluSx SINE Alu 1 300 -12 593 273 110 60 chr3 149844073 149844655 -77679923 + L1M4 LINE L1 3398 4032 -2612 447 52 0 0 chr3 149844655 149844713 -77679865 + (CA)n Simple_repeat Simple_repeat 2 59 0 593 273 110 60 chr3 149844713 149844928 -77679650 + L1M4 LINE L1 4032 4235 -2409 2110 126 0 0 chr3 149845292 149845602 -77678976 + AluSx SINE Alu 1 310 -2 670 96 0 0 chr3 149846025 149846119 -77678459 - AluY SINE Alu -9 302 209 246 301 43 99 chr3 149846133 149846171 -77678407 - L1ME LINE L1 -382 5739 5700 2062 120 0 3 chr3 149846171 149846472 -77678106 + AluSq SINE Alu 1 300 -13 246 301 43 99 chr3 149846472 149846706 -77677872 - L1ME LINE L1 -421 5700 5483 1037 167 43 34 chr3 149846706 149846939 -77677639 - MER46A DNA MER2_type -1 235 1 246 301 43 99 chr3 149846939 149846967 -77677611 - L1ME LINE L1 -638 5483 5455 1416 133 9 13 chr3 149846975 149847208 -77677370 - AluJb SINE Alu -80 232 1 288 302 168 22 chr3 149847233 149847513 -77677065 + L2 LINE L2 2710 3047 -266 1939 140 3 3 chr3 149847560 149847867 -77676711 - AluSx SINE Alu -5 307 1 256 163 0 0 chr3 149848168 149848211 -77676367 - 5S rRNA rRNA -78 43 1 457 198 18 0 chr3 149848759 149848870 -77675708 + GA-rich Low_complexity Low_complexity 2 114 0 243 294 0 15 chr3 149848874 149848942 -77675636 + CT-rich Low_complexity Low_complexity 3 69 0 187 158 158 0 chr3 149849236 149849274 -77675304 - L2 LINE L2 -9 3304 3261 372 43 0 0 chr3 149849409 149849455 -77675123 + (TG)n Simple_repeat Simple_repeat 2 47 0 1496 164 14 21 chr3 149849455 149849742 -77674836 - AluJb SINE Alu -27 285 1 1696 172 7 3 chr3 149850422 149850718 -77673860 + AluJb SINE Alu 1 297 -15 315 303 143 0 chr3 149850907 149851026 -77673552 + MIR SINE MIR 50 185 -77 520 268 79 26 chr3 149851073 149851231 -77673347 + MIR SINE MIR 50 221 -41 2384 71 0 7 chr3 149851231 149851541 -77673037 + AluY SINE Alu 1 308 -3 520 268 79 26 chr3 149851541 149851572 -77673006 + MIR SINE MIR 221 249 -13 991 107 0 89 chr3 149851799 149851874 -77672704 + LTR32 LTR ERVL 319 372 -99 1868 150 0 10 chr3 149851874 149852168 -77672410 + AluSx SINE Alu 3 293 -19 991 107 0 89 chr3 149852168 149852260 -77672318 + LTR32 LTR ERVL 372 471 0 562 254 60 63 chr3 149852667 149852919 -77671659 - MER21B LTR ERV1 -149 714 464 757 194 62 0 chr3 149852930 149853093 -77671485 - L1MD2 LINE L1 0 7807 6194 1050 297 83 59 chr3 149854122 149854679 -77669899 - L2 LINE L2 -1 3271 2729 1791 148 37 0 chr3 149854679 149854976 -77669602 - AluSx SINE Alu -3 309 2 1050 297 83 59 chr3 149854976 149855277 -77669301 - L2 LINE L2 -543 2729 2381 225 0 0 0 chr3 149855277 149855302 -77669276 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 1050 297 83 59 chr3 149855302 149855405 -77669173 - L2 LINE L2 -891 2381 2282 1628 159 10 45 chr3 149855442 149855751 -77668827 - AluJo SINE Alu -14 298 1 560 119 0 59 chr3 149855877 149855978 -77668600 - AluJ/FRAM SINE Alu 0 312 218 1669 170 122 55 chr3 149856371 149856612 -77667966 - L1MB3 LINE L1 0 6183 5960 2072 143 0 0 chr3 149856612 149856919 -77667659 - AluSx SINE Alu -5 307 1 1907 149 0 10 chr3 149856924 149857225 -77667353 - AluJb SINE Alu -13 299 2 1669 170 122 55 chr3 149857225 149857555 -77667023 - L1MB3 LINE L1 -226 5957 5443 4016 76 0 8 chr3 149857979 149858494 -77666084 + MER9 LTR ERVK 1 511 0 244 115 0 58 chr3 149859117 149859169 -77665409 + L1PA15 LINE L1 6110 6158 -7 22 35 0 0 chr3 149859183 149859212 -77665366 + AT_rich Low_complexity Low_complexity 1 29 0 228 300 0 0 chr3 149859238 149859298 -77665280 + (TATG)n Simple_repeat Simple_repeat 3 62 0 2157 94 0 7 chr3 149859305 149859612 -77664966 - AluY SINE Alu -6 305 1 2284 92 10 7 chr3 149859619 149859914 -77664664 - AluSx SINE Alu -16 296 1 381 245 136 65 chr3 149860019 149860203 -77664375 - MIR SINE MIR -3 259 63 975 260 68 44 chr3 149860217 149860602 -77663976 - L2 LINE L2 -1907 1407 1014 2558 201 45 22 chr3 149860670 149861670 -77662908 + L1ME2 LINE L1 4899 5913 -251 1145 197 147 19 chr3 149862054 149862069 -77662509 - AluJo SINE Alu -10 292 280 225 83 0 0 chr3 149862069 149862105 -77662473 + (TATG)n Simple_repeat Simple_repeat 1 36 0 1145 197 147 19 chr3 149862105 149862348 -77662230 - AluJo SINE Alu -22 280 1 633 205 0 0 chr3 149862746 149862858 -77661720 - AluJo/FRAM SINE Alu -67 245 134 447 162 0 0 chr3 149862854 149862922 -77661656 - AluS SINE Alu -244 69 2 * 1248 184 13 21 chr3 149863034 149863268 -77661310 - AluJb SINE Alu -2 310 79 291 28 0 0 chr3 149863875 149863911 -77660667 + (TG)n Simple_repeat Simple_repeat 1 36 0 1131 168 16 0 chr3 149863911 149864102 -77660476 - AluJb SINE Alu -33 279 86 4677 206 58 55 chr3 149864818 149865719 -77658859 - L1MCb LINE L1 -2090 4474 3578 2355 99 0 3 chr3 149865719 149866031 -77658547 - AluY SINE Alu 0 311 1 4677 206 58 55 chr3 149866031 149866590 -77657988 - L1MCb LINE L1 -2986 3578 3023 252 0 0 0 chr3 149866590 149866618 -77657960 + (TG)n Simple_repeat Simple_repeat 2 29 0 1794 191 0 0 chr3 149866618 149866912 -77657666 - AluSx SINE Alu -18 294 1 4677 206 58 55 chr3 149866912 149867096 -77657482 - L1MCb LINE L1 -3540 3024 2822 1309 115 111 25 chr3 149867102 149867337 -77657241 - THE1C LTR MaLR 0 375 121 3209 136 8 64 chr3 149867337 149867509 -77657069 - THE1B-int LTR MaLR -1090 561 381 2006 121 18 3 chr3 149867509 149867791 -77656787 - AluSx SINE Alu -26 286 1 3209 136 8 64 chr3 149867791 149868212 -77656366 - THE1B-int LTR MaLR -1270 381 1 1588 141 83 49 chr3 149868216 149868564 -77656014 - THE1B LTR MaLR -4 360 1 673 253 38 67 chr3 149868566 149868751 -77655827 - L1MCb LINE L1 -3894 2851 2677 1922 167 3 3 chr3 149868751 149869051 -77655527 - AluJb SINE Alu -12 300 1 673 253 38 67 chr3 149869051 149869181 -77655397 - L1MCb LINE L1 -4068 2677 2545 1693 181 30 3 chr3 149869185 149869488 -77655090 - AluJo SINE Alu -1 311 1 702 207 0 0 chr3 149869490 149869611 -77654967 - FLAM_A SINE Alu -9 133 13 1901 243 160 56 chr3 149869618 149870317 -77654261 - L1MCb LINE L1 -4221 2524 1899 2465 85 3 0 chr3 149870317 149870623 -77653955 - AluSg SINE Alu -3 307 1 1901 243 160 56 chr3 149870623 149870658 -77653920 - L1MCb LINE L1 -4846 1899 1869 1730 171 19 13 chr3 149870658 149870968 -77653610 - AluJb SINE Alu 0 312 1 1901 243 160 56 chr3 149870968 149871932 -77652646 - L1MCb LINE L1 -4876 1869 554 479 293 30 54 chr3 149872248 149872415 -77652163 - L1MCb LINE L1 -5692 353 206 1020 255 89 34 chr3 149872576 149873081 -77651497 - L1MDa LINE L1 -3343 3197 2665 349 271 85 17 chr3 149873123 149873300 -77651278 - L1MDa LINE L1 -3969 2571 2383 24 0 0 0 chr3 149873744 149873768 -77650810 + AT_rich Low_complexity Low_complexity 1 24 0 711 131 0 33 chr3 149875354 149875476 -77649102 - FLAM_C SINE Alu -14 129 12 1524 182 36 23 chr3 149875495 149875802 -77648776 - AluJb SINE Alu -1 311 1 307 231 105 21 chr3 149876057 149876200 -77648378 - L1ME4a LINE L1 0 6121 5967 267 284 9 37 chr3 149876689 149876798 -77647780 + CT-rich Low_complexity Low_complexity 3 108 0 2086 127 0 7 chr3 149876946 149877238 -77647340 + AluSx SINE Alu 5 294 -18 2280 115 3 0 chr3 149877865 149878169 -77646409 + AluSx SINE Alu 1 305 -7 189 0 0 0 chr3 149879625 149879646 -77644932 + (T)n Simple_repeat Simple_repeat 1 21 0 189 94 0 0 chr3 149880551 149880583 -77643995 + (T)n Simple_repeat Simple_repeat 1 32 0 216 0 0 0 chr3 149881239 149881263 -77643315 + (CTG)n Simple_repeat Simple_repeat 3 26 0 689 260 70 26 chr3 149881932 149882159 -77642419 - MER102a DNA MER1_type -1 329 93 1789 176 0 20 chr3 149882578 149882880 -77641698 - AluJb SINE Alu -16 296 1 1322 184 45 51 chr3 149883171 149883507 -77641071 - L1ME1 LINE L1 -26 6140 5807 304 98 0 0 chr3 149883507 149883548 -77641030 + Alu SINE Alu 244 284 -18 2213 114 0 0 chr3 149884756 149885046 -77639532 - AluSx SINE Alu -22 290 1 228 35 0 0 chr3 149885443 149885472 -77639106 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr3 149885729 149885750 -77638828 + AT_rich Low_complexity Low_complexity 1 21 0 2091 128 3 0 chr3 149885754 149886050 -77638528 - AluSq SINE Alu -16 297 1 2519 53 0 0 chr3 149886059 149886395 -77638183 - AluY SINE Alu 0 336 1 24 32 0 0 chr3 149886487 149886518 -77638060 + AT_rich Low_complexity Low_complexity 1 31 0 1301 215 27 0 chr3 149886523 149886779 -77637799 - AluJo SINE Alu -23 289 27 874 184 0 44 chr3 149887543 149887701 -77636877 - FRAM SINE Alu -14 152 2 22 35 0 0 chr3 149887902 149887931 -77636647 + AT_rich Low_complexity Low_complexity 1 29 0 1888 134 14 7 chr3 149887931 149888214 -77636364 - AluJb SINE Alu -27 285 1 196 247 268 10 chr3 149889410 149889604 -77634974 - L3 LINE CR1 -142 1435 1192 28 29 0 0 chr3 149889607 149889642 -77634936 + AT_rich Low_complexity Low_complexity 1 35 0 296 276 118 64 chr3 149889645 149889848 -77634730 - MIR SINE MIR -36 226 13 502 133 92 20 chr3 149890118 149890216 -77634362 - U6 snRNA snRNA 0 107 3 251 299 51 0 chr3 149890230 149890347 -77634231 - L3 LINE CR1 -397 1180 1058 2328 60 0 0 chr3 149890628 149890918 -77633660 + AluSx SINE Alu 17 306 0 707 111 0 0 chr3 149890964 149891063 -77633515 - HY3 scRNA scRNA -2 99 1 2047 137 3 7 chr3 149891753 149891886 -77632692 + AluSx SINE Alu 1 133 -179 2213 112 10 0 chr3 149891886 149892181 -77632397 + AluSx SINE Alu 1 298 -14 2047 137 3 7 chr3 149892181 149892346 -77632232 + AluSx SINE Alu 133 298 -14 893 196 0 0 chr3 149892545 149892693 -77631885 - AluJb SINE Alu -28 284 137 461 190 33 25 chr3 149892819 149892940 -77631638 - L1MA4 LINE L1 0 6300 6179 1549 169 4 18 chr3 149892940 149893212 -77631366 - AluJo SINE Alu -2 310 43 792 252 53 56 chr3 149893865 149894202 -77630376 + L1MC/D LINE L1 5281 5616 -2192 229 79 79 0 chr3 149894209 149894247 -77630331 + L1MC/D LINE L1 5685 5725 -2083 276 211 53 26 chr3 149894247 149894323 -77630255 + MLT1L LTR MaLR 2 79 -536 639 213 11 80 chr3 149894447 149894635 -77629943 + MER5A DNA MER1_type 12 186 -3 462 274 81 66 chr3 149894635 149894967 -77629611 + MLT1L LTR MaLR 245 581 -34 2072 99 60 7 chr3 149895034 149895318 -77629260 - AluSx SINE Alu -13 299 1 271 190 22 0 chr3 149895512 149895561 -77629017 + Alu SINE Alu 1 45 -256 1474 144 21 62 chr3 149895661 149895676 -77628902 + MSTB1 LTR MaLR 145 159 -216 1762 133 19 8 chr3 149895676 149895940 -77628638 - AluSx SINE Alu -45 267 1 1474 144 21 62 chr3 149895940 149896228 -77628350 + MSTB1 LTR MaLR 159 374 -1 399 223 112 99 chr3 149896231 149896282 -77628296 - MIR SINE MIR -22 240 191 1616 144 112 7 chr3 149896282 149896559 -77628019 - AluSg SINE Alu -4 306 1 399 223 112 99 chr3 149896559 149896740 -77627838 - MIR SINE MIR -71 191 5 190 307 40 0 chr3 149896830 149896905 -77627673 - MIR SINE MIR -129 133 56 1321 256 67 31 chr3 149896926 149897344 -77627234 + MLT1K LTR MaLR 156 588 0 234 208 0 0 chr3 149897537 149897585 -77626993 - MIR SINE MIR -3 259 212 331 204 124 9 chr3 149897635 149897748 -77626830 + LTR33 LTR ERVL 7 132 -389 378 205 103 6 chr3 149897790 149897946 -77626632 + LTR33 LTR ERVL 207 377 -144 1805 149 7 45 chr3 149898116 149898424 -77626154 - AluJb SINE Alu -16 296 1 573 318 0 31 chr3 149898508 149898687 -77625891 - MIR SINE MIR -19 243 71 1940 116 87 123 chr3 149898687 149899135 -77625443 + MSTB1 LTR MaLR 1 432 0 573 318 0 31 chr3 149899135 149899178 -77625400 - MIR SINE MIR -191 71 28 300 241 121 9 chr3 149899235 149899351 -77625227 - LTR33 LTR ERVL -386 135 7 490 293 13 6 chr3 149899723 149899880 -77624698 - MIR SINE MIR -3 259 102 1152 269 58 39 chr3 149900208 149900676 -77623902 + MLT1L LTR MaLR 134 610 -5 675 71 0 0 chr3 149900676 149900760 -77623818 + AluS SINE Alu 2 85 -227 754 136 0 0 chr3 149901548 149901658 -77622920 + FRAM SINE Alu 43 152 -24 592 254 88 6 chr3 149901671 149901852 -77622726 - MIR SINE MIR -19 243 48 21 0 0 0 chr3 149902292 149902313 -77622265 + AT_rich Low_complexity Low_complexity 1 21 0 2967 163 40 16 chr3 149902869 149903414 -77621164 - MER74A LTR ERVL 0 558 1 298 200 82 0 chr3 149903523 149903608 -77620970 + L2 LINE L2 2826 2917 -396 610 309 53 43 chr3 149903822 149904197 -77620381 - L1ME4a LINE L1 -261 5860 5482 2248 99 3 22 chr3 149904225 149904398 -77620180 - AluSx SINE Alu -5 307 141 2352 98 3 0 chr3 149904398 149904693 -77619885 - AluSp SINE Alu -17 296 1 2248 99 3 22 chr3 149904693 149904832 -77619746 - AluSx SINE Alu -171 141 1 321 104 21 0 chr3 149904845 149904893 -77619685 + (TTCC)n Simple_repeat Simple_repeat 1 49 0 751 139 47 0 chr3 149904893 149905065 -77619513 + CT-rich Low_complexity Low_complexity 1 180 0 751 189 113 0 chr3 149905068 149905227 -77619351 - AluSg/x SINE Alu -1 311 135 186 305 0 17 chr3 149905810 149905869 -77618709 + MIR SINE MIR 2 59 -203 344 300 10 0 chr3 149905895 149905995 -77618583 - MIR SINE MIR -113 149 49 676 234 51 54 chr3 149906031 149906264 -77618314 + MER20 DNA MER1_type 1 217 -2 1742 171 11 0 chr3 149907585 149907872 -77616706 - AluJb SINE Alu -22 290 1 507 290 20 40 chr3 149907955 149908203 -77616375 - MIR SINE MIR -12 250 8 259 230 92 23 chr3 150112251 150112338 -77412240 + MIR SINE MIR 95 187 -75 281 222 32 0 chr3 150112487 150112550 -77412028 + MER58 DNA MER1_type 2356 2420 0 271 244 24 0 chr3 150113757 150113839 -77410739 - LTR39 LTR ERV1 -528 255 172 924 234 176 21 chr3 150115509 150115838 -77408740 - MSTD LTR MaLR -12 384 5 485 240 140 0 chr3 150115849 150115999 -77408579 + MIR SINE MIR 79 249 -13 421 209 0 0 chr3 150116130 150116221 -77408357 - MER3 DNA MER1_type -4 205 115 582 229 13 0 chr3 150116325 150116478 -77408100 + MER89 LTR ERV1 405 559 0 436 239 153 26 chr3 150116525 150116831 -77407747 - L2 LINE L2 -710 2604 2182 281 284 34 11 chr3 150116843 150116931 -77407647 - L2 LINE L2 -3 3269 3180 366 101 0 58 chr3 150116964 150117033 -77407545 + L1MB1 LINE L1 6089 6153 -15 357 302 65 51 chr3 150117158 150117486 -77407092 - L2 LINE L2 -248 3024 2698 208 283 0 0 chr3 150117482 150117535 -77407043 - MER5B DNA MER1_type -50 128 76 * 500 223 134 19 chr3 150117657 150117814 -77406764 + MSTD LTR MaLR 222 396 0 195 300 17 17 chr3 150118376 150118436 -77406142 + L2 LINE L2 3198 3257 -15 3644 186 2 15 chr3 150120419 150121208 -77403370 + HERVH LTR ERV1 2809 3587 -4126 760 203 6 0 chr3 150121199 150121376 -77403202 + HERVH LTR ERV1 3804 3981 -3732 * 374 221 17 0 chr3 150121424 150121528 -77403050 + HERVH LTR ERV1 3962 4072 -2457 2798 186 2 20 chr3 150121689 150122284 -77402294 - HERVH LTR ERV1 -2850 4135 3957 1034 141 11 0 chr3 150122321 150122505 -77402073 - HERVH LTR ERV1 -3720 3993 3808 * 1321 187 4 4 chr3 150122501 150122768 -77401810 - HERVH LTR ERV1 -4126 3587 3321 528 294 56 73 chr3 150123017 150123429 -77401149 + MLT1K LTR MaLR 179 583 -5 542 315 46 20 chr3 150124411 150124608 -77399970 - MIR SINE MIR -55 207 6 230 314 95 44 chr3 150124685 150124822 -77399756 + L2 LINE L2 3128 3271 -1 24 0 0 0 chr3 150125906 150125930 -77398648 + AT_rich Low_complexity Low_complexity 1 24 0 4414 209 72 5 chr3 150126288 150127515 -77397063 - L1 LINE L1 -874 5272 3964 190 409 0 0 chr3 150129359 150129447 -77395131 - L3 LINE CR1 -13 1564 1477 311 353 81 0 chr3 150130391 150130527 -77394051 + MIR SINE MIR 8 154 -108 1018 268 14 18 chr3 150130714 150130998 -77393580 + MLT1A1 LTR MaLR 83 365 0 365 226 103 28 chr3 150131196 150131448 -77393130 + L1M4 LINE L1 2142 2412 -3734 1966 156 0 23 chr3 150131456 150131764 -77392814 + AluJo SINE Alu 1 301 -11 1583 255 41 10 chr3 150131795 150132278 -77392300 + MER90 LTR ERV1 114 611 -3 277 133 133 0 chr3 150132279 150132339 -77392239 - MIR SINE MIR -114 148 81 324 271 104 31 chr3 150132362 150132458 -77392120 + MER5B DNA MER1_type 69 171 -7 473 111 0 0 chr3 150132584 150132647 -77391931 + AluSp/q SINE Alu 212 274 -39 249 291 76 13 chr3 150132647 150132726 -77391852 - MIR SINE MIR -150 112 29 194 302 57 0 chr3 150132764 150132817 -77391761 - L2 LINE L2 -80 3192 3137 715 210 164 5 chr3 150132869 150133083 -77391495 - MLT1G1 LTR MaLR -331 264 17 21 0 0 0 chr3 150134434 150134455 -77390123 + AT_rich Low_complexity Low_complexity 1 21 0 372 173 29 67 chr3 150134628 150134732 -77389846 + L1MB7 LINE L1 6068 6167 -17 584 282 52 33 chr3 150135005 150135218 -77389360 + MIR SINE MIR 46 262 0 6224 159 6 27 chr3 150135434 150136657 -77387921 - HERVH LTR ERV1 -5709 2004 808 2966 130 8 4 chr3 150136687 150137171 -77387407 - HERVH LTR ERV1 -7227 486 1 348 44 0 0 chr3 150137172 150137217 -77387361 - LTR7 LTR ERV1 -405 45 1 4693 131 36 45 chr3 150137218 150137297 -77387281 + L1PB3 LINE L1 5200 5278 -876 3694 103 0 4 chr3 150137297 150137810 -77386768 + MER9 LTR ERVK 1 511 0 4693 131 36 45 chr3 150137810 150137870 -77386708 + L1PB3 LINE L1 5278 5337 -817 7446 32 5 2 chr3 150137870 150139289 -77385289 + L1PA5 LINE L1 4728 6148 -6 4693 131 36 45 chr3 150139289 150140104 -77384474 + L1PB3 LINE L1 5337 6154 0 403 138 0 0 chr3 150140457 150140515 -77384063 + AluS SINE Alu 1 58 -260 1590 103 5 5 chr3 150140618 150140832 -77383746 + AluSg/x SINE Alu 91 304 -8 246 294 78 49 chr3 150141465 150141567 -77383011 + L2 LINE L2 3156 3260 -12 24 0 0 0 chr3 150142139 150142163 -77382415 + AT_rich Low_complexity Low_complexity 1 24 0 761 221 36 64 chr3 150142165 150142414 -77382164 - L1ME3 LINE L1 -1 6161 5920 349 73 0 18 chr3 150142416 150142471 -77382107 - L1ME3 LINE L1 -210 5952 5899 2013 219 112 76 chr3 150142478 150143441 -77381137 - L1MC4 LINE L1 -6 8036 7039 300 210 10 90 chr3 150143991 150144091 -77380487 - L2 LINE L2 -1 3312 3221 282 271 0 0 chr3 150145266 150145336 -77379242 - L1MC4 LINE L1 -532 7510 7441 21 0 0 0 chr3 150146785 150146806 -77377772 + AT_rich Low_complexity Low_complexity 1 21 0 2382 65 0 3 chr3 150146971 150147264 -77377314 + AluY SINE Alu 1 292 -19 384 335 6 36 chr3 150148288 150148455 -77376123 - MIR3 SINE MIR -13 195 34 531 294 78 6 chr3 150148776 150148956 -77375622 - MIR SINE MIR -1 261 69 2434 77 3 0 chr3 150149643 150149940 -77374638 + AluY SINE Alu 1 298 -13 213 180 0 0 chr3 150150362 150150412 -77374166 + T-rich Low_complexity Low_complexity 1 50 0 920 207 11 5 chr3 150151641 150151829 -77372749 + MER5A DNA MER1_type 1 189 0 3120 47 12 147 chr3 150153442 150154148 -77370430 + L1P LINE L1 4844 5423 -731 284 216 134 0 chr3 150154674 150154771 -77369807 + MLT1D LTR MaLR 261 370 -135 427 294 141 9 chr3 150155419 150155618 -77368960 + MIR SINE MIR 31 250 -12 377 261 94 36 chr3 150156551 150156689 -77367889 - MER5B DNA MER1_type -32 146 1 5305 125 85 34 chr3 150160284 150161340 -77363238 + Tigger1 DNA MER2_type 1309 2418 0 432 272 224 15 chr3 150161395 150161935 -77362643 - L1M4 LINE L1 -1465 4681 4029 1577 189 0 21 chr3 150162675 150162991 -77361587 + AluJo SINE Alu 3 312 0 269 281 12 12 chr3 150166073 150166155 -77358423 - MARNA DNA Mariner -182 404 323 937 183 6 29 chr3 150166740 150166915 -77357663 - FRAM SINE Alu -6 170 1 2400 154 51 12 chr3 150167766 150168258 -77356320 - L1MA6 LINE L1 -1 6299 5789 282 116 0 0 chr3 150168286 150168329 -77356249 + (CA)n Simple_repeat Simple_repeat 1 43 0 247 98 0 24 chr3 150168331 150168372 -77356206 - L1MA6 LINE L1 -523 5782 5743 2066 129 137 34 chr3 150168480 150168868 -77355710 + MSTA LTR MaLR 1 428 0 180 152 0 0 chr3 150169098 150169131 -77355447 + A-rich Low_complexity Low_complexity 1 33 0 399 213 126 0 chr3 150169911 150170038 -77354540 + L1ME4a LINE L1 5930 6072 -49 258 32 0 0 chr3 150170277 150170308 -77354270 + (CA)n Simple_repeat Simple_repeat 2 32 0 225 0 0 0 chr3 150170589 150170614 -77353964 + (CA)n Simple_repeat Simple_repeat 2 26 0 26 30 0 0 chr3 150170905 150170938 -77353640 + AT_rich Low_complexity Low_complexity 1 33 0 742 237 72 12 chr3 150171766 150172015 -77352563 - L1MC4a LINE L1 -1234 6574 6311 1680 236 85 16 chr3 150172693 150173226 -77351352 + MLT1F1 LTR MaLR 1 567 0 6322 153 58 22 chr3 150173478 150175473 -77349105 + L1MA6 LINE L1 3953 6015 -285 1804 169 57 21 chr3 150175573 150175945 -77348633 + L1MA6 LINE L1 5916 6300 0 1817 150 3 45 chr3 150176023 150176337 -77348241 - AluJo SINE Alu -10 302 2 618 210 32 0 chr3 150176634 150176758 -77347820 + FLAM_C SINE Alu 1 128 -5 786 215 33 56 chr3 150178784 150179054 -77345524 - L1MC5 LINE L1 -59 7902 7639 664 219 84 47 chr3 150179238 150179453 -77345125 + MER58A DNA MER1_type 2 224 0 180 219 156 0 chr3 150179815 150179879 -77344699 + L2 LINE L2 2898 2971 -301 583 221 0 7 chr3 150179965 150180101 -77344477 - AluYa8 SINE Alu -12 298 164 4304 38 8 0 chr3 150180209 150180730 -77343848 + L1PA6 LINE L1 5627 6151 -3 197 270 138 57 chr3 150181766 150181925 -77342653 - L2 LINE L2 -3 3310 3139 520 102 0 11 chr3 150182093 150182181 -77342397 + L1MA7 LINE L1 6200 6286 -5 255 175 70 0 chr3 150182229 150182286 -77342292 + MER116 DNA Mariner 19 79 -1 401 284 241 32 chr3 150183678 150183960 -77340618 + L2 LINE L2 1109 1449 -1865 428 335 18 18 chr3 150184006 150184173 -77340405 - MER5B DNA MER1_type -8 170 4 2335 254 243 16 chr3 150184178 150185501 -77339077 + L2 LINE L2 1509 3136 -177 268 213 46 149 chr3 150185565 150185627 -77338951 + L2 LINE L2 3115 3182 -131 1936 133 23 52 chr3 150185627 150185974 -77338604 - MER1B DNA MER1_type 0 337 1 268 213 46 149 chr3 150185974 150186085 -77338493 + L2 LINE L2 3182 3270 -43 184 263 79 79 chr3 150186732 150186808 -77337770 + L2 LINE L2 3150 3225 -47 342 305 109 40 chr3 150189102 150189276 -77335302 - MIR3 SINE MIR -3 205 20 12040 200 26 18 chr3 150189913 150191985 -77332593 + L1PB1 LINE L1 1789 3842 -3020 243 0 0 0 chr3 150191985 150192012 -77332566 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 12040 200 26 18 chr3 150192012 150192260 -77332318 + L1PB1 LINE L1 3842 4086 -2776 3253 16 0 0 chr3 150192260 150192632 -77331946 + L1PA2 LINE L1 5782 6153 -2 12040 200 26 18 chr3 150192632 150193904 -77330674 + L1PB1 LINE L1 4086 5476 -1386 3124 76 7 47 chr3 150193905 150194353 -77330225 + MLT2A1 LTR ERVL 8 437 -7 6520 125 6 8 chr3 150194353 150195403 -77329175 + L1PB1 LINE L1 5469 6512 -355 197 62 0 31 chr3 150195403 150195435 -77329143 + (CATA)n Simple_repeat Simple_repeat 2 32 0 6520 125 6 8 chr3 150195435 150195791 -77328787 + L1PB1 LINE L1 6512 6867 0 267 261 61 61 chr3 150195837 150196082 -77328496 + MER97c DNA MER1_type? 806 1050 -40 260 200 129 0 chr3 150196367 150196452 -77328126 - L1ME LINE L1 -740 5430 5335 181 273 127 0 chr3 150196582 150196637 -77327941 - MIR3 SINE MIR -32 176 115 295 265 48 12 chr3 150196672 150196755 -77327823 + MIR SINE MIR 112 197 -65 429 288 102 38 chr3 150196768 150197004 -77327574 + MER102a DNA MER1_type 44 294 -36 326 271 42 10 chr3 150197300 150197396 -77327182 + L2 LINE L2 2515 2613 -701 2180 99 3 43 chr3 150198008 150198332 -77326246 - AluY SINE Alu 0 311 1 258 360 36 22 chr3 150198426 150198565 -77326013 + MER5A DNA MER1_type 1 141 -48 * 460 275 78 51 chr3 150198559 150198898 -77325680 + L2 LINE L2 2698 3035 -237 428 152 0 38 chr3 150199001 150199080 -77325498 - L1MB1 LINE L1 -4 6164 6089 307 304 35 26 chr3 150199083 150199198 -77325380 + L2 LINE L2 3154 3269 -3 606 252 126 12 chr3 150199210 150199538 -77325040 + L2 LINE L2 2182 2625 -689 1771 183 85 2 chr3 150199563 150199986 -77324592 - MER89 LTR ERV1 0 559 1 1115 260 114 45 chr3 150200332 150200824 -77323754 + MLT1H LTR MaLR 12 537 -12 1134 252 59 68 chr3 150201420 150201992 -77322586 + MLT1F1 LTR MaLR 1 567 0 487 267 89 7 chr3 150202411 150202546 -77322032 - MIR3 SINE MIR -33 175 30 517 205 72 48 chr3 150202585 150202751 -77321827 - MIR SINE MIR -5 257 88 2058 263 84 47 chr3 150202751 150203246 -77321332 + MER115 DNA AcHobo 1 529 -164 660 204 15 8 chr3 150203246 150203378 -77321200 + FLAM_A SINE Alu 1 133 0 2058 263 84 47 chr3 150203378 150203547 -77321031 + MER115 DNA AcHobo 529 690 -3 789 233 45 45 chr3 150203546 150203748 -77320830 + MER63A DNA MER1_type 1 202 -8 * 464 253 0 0 chr3 150203764 150203851 -77320727 - MIR SINE MIR -168 94 8 828 93 17 0 chr3 150204463 150204581 -77319997 + AluSg/x SINE Alu 174 293 -16 285 229 71 0 chr3 150204645 150204715 -77319863 + MER105 DNA DNA 1 75 -129 2105 142 3 0 chr3 150204830 150205132 -77319446 + AluJb SINE Alu 10 312 0 939 197 62 0 chr3 150205613 150205791 -77318787 + MER5A DNA MER1_type 1 189 0 2376 85 0 16 chr3 150206373 150206689 -77317889 - AluY SINE Alu 0 311 1 1408 279 75 10 chr3 150207010 150207397 -77317181 + LTR16C LTR ERVL 80 491 0 240 303 0 30 chr3 150207525 150207591 -77316987 - L2 LINE L2 0 3272 3209 305 167 28 0 chr3 150208079 150208151 -77316427 - LTR37B LTR ERV1 0 468 395 588 289 26 26 chr3 150208197 150208425 -77316153 - MER31-int LTR ERV1 -877 4059 3832 366 261 85 0 chr3 150208555 150208685 -77315893 + MER69 DNA AcHobo 2002 2142 -384 1703 157 52 17 chr3 150208692 150208979 -77315599 + AluJo SINE Alu 1 297 -15 5060 202 30 14 chr3 150208995 150210007 -77314571 + L1M1 LINE L1 22 1049 -6516 348 155 0 0 chr3 150210110 150210168 -77314410 + Alu SINE Alu 240 297 -5 12538 144 23 63 chr3 150210186 150213998 -77310580 + L1MA3 LINE L1 24 3566 -3999 1782 169 10 13 chr3 150213998 150214299 -77310279 + AluJo SINE Alu 1 300 -12 12538 144 23 63 chr3 150214299 150216230 -77308348 + L1MA3 LINE L1 3566 5571 -1994 7092 108 16 20 chr3 150216225 150217217 -77307361 + L1MA3 LINE L1 6499 7482 -242 * 1850 124 8 0 chr3 150217217 150217475 -77307103 + AluSx SINE Alu 40 299 -13 7092 108 16 20 chr3 150217475 150217717 -77306861 + L1MA3 LINE L1 7482 7724 0 1114 207 105 39 chr3 150217719 150218082 -77306496 + MER69 DNA AcHobo 2140 2526 0 27 0 0 0 chr3 150218520 150218547 -77306031 + AT_rich Low_complexity Low_complexity 1 27 0 256 342 135 0 chr3 150219649 150219760 -77304818 + MIR3 SINE MIR 34 159 -49 469 218 8 48 chr3 150219845 150219966 -77304612 - MLT1F LTR MaLR 0 542 427 3225 190 23 21 chr3 150219966 150220577 -77304001 - LTR39 LTR ERV1 0 783 172 24 77 0 0 chr3 150221656 150221708 -77302870 + AT_rich Low_complexity Low_complexity 1 52 0 857 285 34 8 chr3 150221826 150222061 -77302517 + MIR SINE MIR 9 249 -13 1505 181 44 0 chr3 150222222 150222471 -77302107 - AluJo SINE Alu -50 262 3 1090 152 0 11 chr3 150222480 150222658 -77301920 - AluSg/x SINE Alu -1 311 136 1589 170 45 0 chr3 150222822 150223069 -77301509 - AluJo SINE Alu -52 260 3 2376 122 0 0 chr3 150223078 150223389 -77301189 - AluSx SINE Alu -1 311 1 249 234 221 13 chr3 150223389 150223543 -77301035 - MIR SINE MIR -66 196 11 394 352 78 0 chr3 150223622 150223815 -77300763 - LTR16A LTR ERVL -7 443 236 249 33 0 0 chr3 150224052 150224082 -77300496 + (T)n Simple_repeat Simple_repeat 1 30 0 310 233 0 0 chr3 150224085 150224158 -77300420 - LTR30 LTR ERV1 -98 624 552 478 119 0 0 chr3 150224168 150224235 -77300343 + MER31B LTR ERV1 1 67 -399 537 155 69 35 chr3 150224235 150224351 -77300227 + L1PA16 LINE L1 5874 5993 -173 260 226 16 16 chr3 150224686 150224748 -77299830 - L2 LINE L2 -2118 1196 1135 1903 158 30 0 chr3 150224892 150225227 -77299351 - MER90 LTR ERV1 -226 349 5 314 289 12 0 chr3 150225735 150225818 -77298760 + L2 LINE L2 3211 3294 -19 2284 101 0 3 chr3 150225850 150226157 -77298421 - AluSp SINE Alu -6 307 2 598 278 52 28 chr3 150226415 150226627 -77297951 + MIR SINE MIR 46 262 0 289 271 279 0 chr3 150227222 150227344 -77297234 - MIR SINE MIR -33 229 74 927 273 62 77 chr3 150228615 150229033 -77295545 - MLT1K LTR MaLR 0 588 177 458 253 63 13 chr3 150229125 150229283 -77295295 - MIR SINE MIR 0 262 97 328 106 59 0 chr3 150230042 150230127 -77294451 + (TA)n Simple_repeat Simple_repeat 2 91 0 471 319 30 0 chr3 150230388 150230557 -77294021 + HsTC2 DNA Tc2 711 884 -1014 598 111 83 104 chr3 150231126 150231270 -77293308 - L1MB5 LINE L1 0 6174 6034 1906 77 85 8 chr3 150231495 150231755 -77292823 - AluSc SINE Alu 0 309 30 252 333 10 10 chr3 150232026 150232039 -77292539 - L2 LINE L2 -208 3064 3052 2444 100 0 0 chr3 150232039 150232349 -77292229 - AluSx SINE Alu -2 310 1 252 333 10 10 chr3 150232349 150232434 -77292144 - L2 LINE L2 -219 3053 2966 423 340 62 25 chr3 150232466 150232790 -77291788 - L2 LINE L2 -428 2886 2551 989 127 0 7 chr3 150233721 150233863 -77290715 + AluJo SINE Alu 1 141 -171 2295 101 0 7 chr3 150233863 150234171 -77290407 + AluSx SINE Alu 1 306 -6 2015 100 61 0 chr3 150234171 150234451 -77290127 + AluSq SINE Alu 3 299 -14 458 319 140 13 chr3 150234557 150234786 -77289792 + LTR16A LTR ERVL 25 282 -168 375 264 178 12 chr3 150234900 150235063 -77289515 - MIR SINE MIR -36 226 37 2252 176 98 106 chr3 150235709 150236340 -77288238 + MLT1E2 LTR MaLR 1 626 0 6235 192 53 17 chr3 150236378 150237715 -77286863 + Charlie1a DNA MER1_type 35 1419 -36 2147 92 10 17 chr3 150237845 150238139 -77286439 - AluSx SINE Alu -20 292 1 455 322 91 0 chr3 150238171 150238370 -77286208 + MER102b DNA MER1_type 83 299 -42 1051 208 12 33 chr3 150238731 150238944 -77285634 + MIR SINE MIR 28 237 -25 2192 186 16 5 chr3 150238944 150239314 -77285264 + MLT1A2 LTR MaLR 1 374 0 1051 208 12 33 chr3 150239314 150239340 -77285238 + MIR SINE MIR 237 262 0 480 203 209 27 chr3 150240780 150240928 -77283650 + MER5A DNA MER1_type 15 189 0 189 263 53 86 chr3 150242267 150242419 -77282159 + L2 LINE L2 2842 2988 -284 215 276 35 0 chr3 150242591 150242649 -77281929 + MIR SINE MIR 64 123 -139 413 292 144 30 chr3 150243186 150243388 -77281190 - MIR SINE MIR -3 259 35 28 29 0 0 chr3 150243786 150243821 -77280757 + AT_rich Low_complexity Low_complexity 1 35 0 1987 93 0 4 chr3 150243823 150244092 -77280486 + AluY SINE Alu 35 302 -9 1130 228 146 92 chr3 150244098 150244237 -77280341 - L1ME3A LINE L1 -26 6144 6014 809 196 131 6 chr3 150244237 150244405 -77280173 + MER5A DNA MER1_type 1 189 0 1130 228 146 92 chr3 150244405 150244853 -77279725 - L1ME3A LINE L1 -156 6014 5525 303 93 0 0 chr3 150245099 150245142 -77279436 + (TAA)n Simple_repeat Simple_repeat 3 45 0 580 241 139 51 chr3 150245146 150245383 -77279195 - MIR SINE MIR 0 262 5 272 188 16 47 chr3 150246053 150246117 -77278461 + L2 LINE L2 3251 3312 -1 446 322 115 5 chr3 150247663 150247871 -77276707 + MIR SINE MIR 32 262 0 257 314 74 40 chr3 150248595 150248770 -77275808 - MIR SINE MIR -21 241 61 1247 242 182 22 chr3 150248770 150249171 -77275407 + MLT1F LTR MaLR 78 542 0 415 324 88 38 chr3 150249698 150250038 -77274540 - MER90 LTR ERV1 -7 607 251 2181 70 52 11 chr3 150250089 150250376 -77274202 + AluY SINE Alu 1 299 -12 409 314 22 1 chr3 150250445 150250593 -77273985 - MIR SINE MIR -62 200 52 992 205 46 65 chr3 150252283 150252546 -77272032 - MIR SINE MIR -3 259 2 505 243 243 0 chr3 150252801 150252945 -77271633 - MER5A DNA MER1_type -2 187 9 382 260 80 0 chr3 150252969 150253069 -77271509 + MIR SINE MIR 30 137 -71 402 125 0 0 chr3 150253138 150253202 -77271376 - AluSc SINE Alu -1 308 245 1919 106 7 35 chr3 150253202 150253485 -77271093 - AluSc SINE Alu -34 275 1 1939 223 14 49 chr3 150253504 150253998 -77270580 + MLT1D LTR MaLR 29 505 0 1941 151 10 3 chr3 150254130 150254429 -77270149 - AluJo SINE Alu -11 301 1 477 219 0 0 chr3 150254485 150254590 -77269988 + L1P LINE L1 5097 5201 -945 1354 186 114 67 chr3 150254592 150255022 -77269556 - LTR7 LTR ERV1 0 450 1 3710 111 7 26 chr3 150255022 150255598 -77268980 - HERVH LTR ERV1 0 7713 7149 1592 149 0 0 chr3 150255579 150255840 -77268738 - HERVH LTR ERV1 -1697 6016 5756 * 3595 147 11 13 chr3 150255832 150256645 -77267933 - HERVH LTR ERV1 -2735 4258 3806 * 9543 137 19 19 chr3 150256639 150259025 -77265553 - HERVH LTR ERV1 -4126 3587 800 218 320 33 59 chr3 150259204 150259357 -77265221 - L2 LINE L2 -460 2854 2706 317 292 31 46 chr3 150259399 150259529 -77265049 + MIR3 SINE MIR 27 154 -54 326 309 0 10 chr3 150259996 150260093 -77264485 + MLT1L LTR MaLR 193 288 -327 2353 109 3 0 chr3 150260351 150260662 -77263916 - AluSx SINE Alu 0 312 1 249 250 38 25 chr3 150260777 150260857 -77263721 + MLT1J LTR MaLR 235 315 -196 1179 196 43 0 chr3 150260969 150261178 -77263400 - MER20 DNA MER1_type 0 219 2 1100 206 5 0 chr3 150261235 150261439 -77263139 + MER3 DNA MER1_type 1 205 -4 489 240 140 0 chr3 150261570 150261720 -77262858 - MIR SINE MIR -13 249 79 1287 176 197 44 chr3 150261731 150262071 -77262507 + MSTD LTR MaLR 5 396 0 260 271 17 0 chr3 150262632 150262691 -77261887 + L2 LINE L2 3198 3257 -15 623 232 83 78 chr3 150264429 150264751 -77259827 + LTR37B LTR ERV1 19 345 -123 2210 120 0 0 chr3 150264751 150265050 -77259528 - AluSq SINE Alu -14 299 1 623 232 83 78 chr3 150265050 150265175 -77259403 + LTR37B LTR ERV1 345 468 0 490 341 23 0 chr3 150265176 150265305 -77259273 - MER91A DNA MER1_type -63 133 2 414 145 12 0 chr3 150265671 150265754 -77258824 + MER3 DNA MER1_type 84 167 -42 1429 168 17 88 chr3 150265762 150266184 -77258394 + MER3 DNA MER1_type 2232 2623 0 1335 171 17 30 chr3 150267435 150267734 -77256844 - MER58B DNA MER1_type 0 341 47 1229 204 37 98 chr3 150267773 150268210 -77256368 + Charlie4a DNA MER1_type 2 401 -1560 2184 109 27 0 chr3 150268210 150268503 -77256075 + AluSc SINE Alu 1 301 -8 1229 204 37 98 chr3 150268503 150268605 -77255973 + Charlie4a DNA MER1_type 401 508 0 22 0 0 0 chr3 150269421 150269443 -77255135 + AT_rich Low_complexity Low_complexity 1 22 0 2023 169 0 3 chr3 150269601 150269914 -77254664 + AluJo SINE Alu 1 312 0 1312 309 54 8 chr3 150270703 150271402 -77253176 - L2 LINE L2 0 3313 2579 478 249 42 84 chr3 150271423 150271660 -77252918 - L2 LINE L2 -1647 1667 1441 455 256 71 18 chr3 150272110 150272278 -77252300 - MIR SINE MIR -15 247 71 634 303 48 5 chr3 150272753 150272941 -77251637 - MIR SINE MIR -55 207 12 216 302 107 53 chr3 150272995 150273164 -77251414 + L2 LINE L2 3094 3271 -1 24 0 0 0 chr3 150274247 150274271 -77250307 + AT_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr3 150274575 150274597 -77249981 + (TTA)n Simple_repeat Simple_repeat 3 24 0 905 260 154 7 chr3 150275892 150276165 -77248413 + LTR16C LTR ERVL 177 489 -2 360 271 171 38 chr3 150276644 150276854 -77247724 - Charlie8 DNA MER1_type -2168 249 12 345 303 92 9 chr3 150278388 150278497 -77246081 - MIR SINE MIR -113 149 32 2092 135 0 7 chr3 150278517 150278813 -77245765 + AluSx SINE Alu 1 294 -18 431 245 123 13 chr3 150279271 150279426 -77245152 - MIR SINE MIR -3 259 88 538 243 144 62 chr3 150281218 150281510 -77243068 + Charlie2 DNA MER1_type 1 316 -2546 * 2299 231 78 30 chr3 150281509 150282462 -77242116 + Charlie2 DNA MER1_type 1865 2862 0 333 260 160 59 chr3 150282550 150282769 -77241809 - MIR SINE MIR -1 261 21 220 276 25 163 chr3 150282887 150283083 -77241495 + L2 LINE L2 3015 3183 -89 449 255 124 19 chr3 150283190 150283351 -77241227 + MER5B DNA MER1_type 1 178 0 243 215 0 0 chr3 150283753 150283818 -77240760 + (TG)n Simple_repeat Simple_repeat 2 66 0 404 273 174 0 chr3 150286072 150286244 -77238334 + MIR SINE MIR 2 203 -59 182 339 17 0 chr3 150286255 150286314 -77238264 - MER5A DNA MER1_type -2 187 128 616 251 80 12 chr3 150289851 150290014 -77234564 - MER96 DNA MER1_type 0 175 2 1728 200 3 13 chr3 150291778 150292143 -77232435 + AluJo SINE Alu 1 362 0 231 213 0 0 chr3 150292580 150292627 -77231951 - L1ME LINE L1 -338 5783 5737 255 31 0 0 chr3 150292733 150292765 -77231813 + (TTTA)n Simple_repeat Simple_repeat 1 32 0 1077 8 0 0 chr3 150292768 150292894 -77231684 - L1HS LINE L1 -7 6148 6023 1070 260 39 10 chr3 150294626 150295073 -77229505 - LTR33 LTR ERVL 0 521 2 653 225 167 36 chr3 150298044 150298266 -77226312 - MIR SINE MIR 0 262 12 275 289 134 0 chr3 150298400 150298497 -77226081 - L2 LINE L2 0 3313 3204 1680 238 25 64 chr3 150298935 150299528 -77225050 - MER74B LTR ERVL -3 619 50 245 250 0 11 chr3 150299684 150299745 -77224833 + (TA)n Simple_repeat Simple_repeat 2 63 -25 3712 135 31 2 chr3 150299745 150300330 -77224248 - MER7C DNA MER2_type 0 602 1 245 250 0 11 chr3 150300330 150300356 -77224222 + (TA)n Simple_repeat Simple_repeat 63 88 0 340 221 0 0 chr3 150300360 150300428 -77224150 - Tigger5 DNA MER2_type -4 2319 2252 285 236 0 0 chr3 150300398 150300453 -77224125 - Tigger5 DNA MER2_type -2268 55 1 * 14132 128 41 3 chr3 150300486 150302804 -77221774 + Tigger1 DNA MER2_type 2 2408 -10 675 37 0 0 chr3 150302814 150302896 -77221682 + (CATATA)n Simple_repeat Simple_repeat 3 84 0 257 75 25 0 chr3 150302905 150302945 -77221633 + (CA)n Simple_repeat Simple_repeat 2 42 0 318 269 0 13 chr3 150302980 150303058 -77221520 + MIR SINE MIR 35 111 -151 2139 104 0 0 chr3 150303317 150303596 -77220982 + AluY SINE Alu 1 279 -32 238 78 20 20 chr3 150303596 150303647 -77220931 + (CAAAC)n Simple_repeat Simple_repeat 5 55 0 21 0 0 0 chr3 150303879 150303900 -77220678 + AT_rich Low_complexity Low_complexity 1 21 0 779 247 57 26 chr3 150304246 150304473 -77220105 + MIR SINE MIR 13 246 -16 346 260 17 68 chr3 150305248 150305425 -77219153 + MLT1H LTR MaLR 381 548 -1 549 222 22 15 chr3 150306251 150306386 -77218192 - MIR SINE MIR -118 144 9 954 313 161 24 chr3 150306563 150307105 -77217473 + L2 LINE L2 2091 2557 -715 1173 173 5 0 chr3 150307105 150307313 -77217265 + MER3 DNA MER1_type 1 209 0 954 313 161 24 chr3 150307313 150307816 -77216762 + L2 LINE L2 2557 3272 0 658 177 196 0 chr3 150309283 150309441 -77215137 + MER5A DNA MER1_type 1 189 0 1958 112 86 0 chr3 150309530 150309808 -77214770 - AluSp SINE Alu -11 302 1 297 183 0 0 chr3 150310154 150310214 -77214364 + (TG)n Simple_repeat Simple_repeat 1 60 0 10939 152 19 14 chr3 150310506 150313554 -77211024 - L1MA3 LINE L1 -111 6194 3129 1577 255 56 2 chr3 150313748 150314160 -77210418 - LTR16C LTR ERVL 0 491 58 438 20 0 0 chr3 150314213 150314264 -77210314 + (TCTG)n Simple_repeat Simple_repeat 2 52 0 660 249 45 11 chr3 150314531 150314708 -77209870 - MIR SINE MIR -2 260 78 341 311 66 26 chr3 150314707 150314858 -77209720 - MIR3 SINE MIR -31 177 21 * 433 265 46 41 chr3 150315231 150315427 -77209151 - MIR SINE MIR -46 216 20 429 304 141 26 chr3 150316101 150316414 -77208164 + L2 LINE L2 2314 2662 -652 2208 183 34 86 chr3 150316543 150317127 -77207451 - MLT2B3 LTR ERVL 0 554 1 340 147 177 4 chr3 150317912 150317999 -77206579 + MLT1I LTR MaLR 318 395 -14 399 328 115 27 chr3 150318006 150318302 -77206276 + L3 LINE CR1 1251 1572 -5 317 268 161 0 chr3 150319524 150319636 -77204942 - MIR3 SINE MIR -43 165 36 690 244 95 0 chr3 150319668 150319836 -77204742 - MIR SINE MIR -1 261 78 251 255 87 106 chr3 150319930 150320091 -77204487 - MIR SINE MIR -74 188 31 234 218 0 0 chr3 150320093 150320148 -77204430 + L1MC4 LINE L1 6651 6705 -1337 447 149 112 52 chr3 150320509 150320643 -77203935 + MLT2C1 LTR ERVL 1 142 -255 3368 175 11 40 chr3 150320643 150321193 -77203385 - L1 LINE L1 -1482 4664 4099 216 0 0 0 chr3 150321193 150321217 -77203361 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2123 90 7 28 chr3 150321219 150321509 -77203069 - AluSc SINE Alu -25 284 1 3368 175 11 40 chr3 150321509 150321720 -77202858 - L1 LINE L1 -2048 4098 3923 * 5152 183 23 23 chr3 150321719 150322919 -77201659 + L1MA10 LINE L1 4668 5866 -468 2342 153 48 15 chr3 150322919 150323331 -77201247 - MSTB LTR MaLR 0 426 1 5152 183 23 23 chr3 150323331 150323634 -77200944 + L1MA10 LINE L1 5866 6180 -154 222 118 0 0 chr3 150323634 150323668 -77200910 + (CAAA)n Simple_repeat Simple_repeat 3 36 0 5152 183 23 23 chr3 150323668 150323821 -77200757 + L1MA10 LINE L1 6180 6331 -3 2906 0 0 0 chr3 150323832 150324143 -77200435 + AluYa5 SINE Alu 1 311 0 925 180 35 78 chr3 150324143 150324427 -77200151 + MLT2C1 LTR ERVL 126 397 0 692 239 6 19 chr3 150324516 150324675 -77199903 - MIR SINE MIR -8 254 98 2006 70 0 18 chr3 150324694 150324966 -77199612 + L1PA7 LINE L1 5887 6153 -1 22 0 0 0 chr3 150325147 150325169 -77199409 + AT_rich Low_complexity Low_complexity 1 22 0 194 261 118 76 chr3 150325304 150325423 -77199155 + L2 LINE L2 3148 3271 -1 487 274 11 74 chr3 150325631 150325806 -77198772 + MIR3 SINE MIR 17 180 -28 207 363 68 47 chr3 150325985 150326175 -77198403 - MIR SINE MIR -64 198 5 302 352 75 48 chr3 150328776 150329003 -77195575 - L2 LINE L2 -13 3259 3027 353 218 45 73 chr3 150329357 150329467 -77195111 + MIR SINE MIR 35 141 -67 429 283 33 13 chr3 150329525 150329677 -77194901 - MER5A DNA MER1_type -33 156 2 197 318 34 11 chr3 150330654 150330742 -77193836 - L2 LINE L2 -1 3312 3223 204 227 0 0 chr3 150330866 150330910 -77193668 + L2 LINE L2 3270 3313 0 3414 64 18 7 chr3 150331876 150332315 -77192263 + MLT2A1 LTR ERVL 1 444 0 283 313 169 23 chr3 150332471 150332643 -77191935 - MIR SINE MIR -26 236 41 180 0 0 0 chr3 150332747 150332767 -77191811 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 697 186 84 6 chr3 150332771 150332948 -77191630 - L1PA16 LINE L1 -9 6156 5936 264 356 168 5 chr3 150333058 150333432 -77191146 - L2 LINE L2 -568 2746 2312 264 324 0 0 chr3 150335241 150335352 -77189226 + MER103 DNA DNA 11 121 -45 * 552 285 0 0 chr3 150335341 150335478 -77189100 + MER96 DNA MER1_type? 11 147 -28 307 331 38 107 chr3 150335629 150336079 -77188499 - L2 LINE L2 -1 3271 2853 609 307 58 59 chr3 150336272 150336775 -77187803 + L2 LINE L2 2771 3270 -2 510 391 0 0 chr3 150337601 150337762 -77186816 - L2 LINE L2 -1 3271 3111 410 264 139 5 chr3 150338054 150338262 -77186316 + LTR16C LTR ERVL 254 489 -2 390 271 19 71 chr3 150338264 150338419 -77186159 - L2 LINE L2 -196 3076 2930 2198 120 0 0 chr3 150339583 150339875 -77184703 + AluSx SINE Alu 1 292 -20 360 276 14 35 chr3 150340163 150340308 -77184270 - MER117 DNA MER1_type -50 147 6 973 193 40 0 chr3 150342482 150342658 -77181920 - MER5A DNA MER1_type -6 183 1 922 119 0 15 chr3 150343242 150343376 -77181202 + AluSp SINE Alu 152 283 -30 519 17 0 0 chr3 150343383 150343443 -77181135 + (CA)n Simple_repeat Simple_repeat 1 60 0 373 363 30 12 chr3 150344629 150344797 -77179781 - MIR3 SINE MIR -8 200 30 247 262 56 74 chr3 150344824 150344972 -77179606 - MIR SINE MIR -13 249 104 204 111 0 0 chr3 150345401 150345437 -77179141 + (TTCA)n Simple_repeat Simple_repeat 4 39 0 304 300 73 45 chr3 150345441 150345551 -77179027 - L2 LINE L2 -18 3254 3142 733 154 0 0 chr3 150345750 150345886 -77178692 - L1MA7 LINE L1 -3 6288 6153 230 333 0 0 chr3 150346705 150346765 -77177813 + L2 LINE L2 2771 2830 -484 259 358 61 20 chr3 150347203 150347351 -77177227 + MER5A DNA MER1_type 23 176 -13 2222 211 52 6 chr3 150348023 150348502 -77176076 + MLT1D LTR MaLR 3 503 -2 1877 161 10 13 chr3 150348804 150349103 -77175475 - AluJo SINE Alu -14 298 1 1987 148 0 37 chr3 150349282 150349606 -77174972 + AluJb SINE Alu 1 312 0 515 224 211 14 chr3 150351213 150351360 -77173218 + MER5A DNA MER1_type 14 189 0 267 170 0 0 chr3 150352586 150352633 -77171945 + LTR33 LTR ERVL 474 520 -1 813 194 42 0 chr3 150353151 150353316 -77171262 - Tigger7 DNA MER2_type 0 2491 2320 12446 133 25 16 chr3 150353323 150354456 -77170122 + Tigger1 DNA MER2_type 22 1183 -1235 2443 90 0 3 chr3 150354456 150354766 -77169812 + AluSg SINE Alu 2 310 0 12446 133 25 16 chr3 150354766 150355750 -77168828 + Tigger1 DNA MER2_type 1183 2157 -261 1529 101 5 0 chr3 150355760 150355978 -77168600 - THE1A LTR MaLR 0 355 137 5373 38 0 3 chr3 150355979 150356689 -77167889 - L1P LINE L1 -2534 3612 2905 1186 60 0 0 chr3 150356689 150356840 -77167738 - THE1A LTR MaLR -204 151 1 * 1472 123 7 74 chr3 150356840 150356996 -77167582 + Tigger1 DNA MER2_type 2155 2285 -133 2009 151 0 3 chr3 150356996 150357287 -77167291 - AluSx SINE Alu -22 290 1 1472 123 7 74 chr3 150357287 150357413 -77167165 + Tigger1 DNA MER2_type 2285 2418 0 309 169 0 0 chr3 150357435 150357494 -77167084 + CT-rich Low_complexity Low_complexity 2 60 0 805 73 0 0 chr3 150357496 150357606 -77166972 - Tigger7 DNA MER2_type -231 2256 2147 1171 174 97 4 chr3 150357609 150357856 -77166722 + Tigger7 DNA MER2_type 77 346 -204 363 250 0 0 chr3 150357853 150357933 -77166645 - Tigger7 DNA MER2_type -653 80 1 * 886 227 5 0 chr3 150358080 150358283 -77166295 - MER3 DNA MER1_type 0 209 6 274 212 0 47 chr3 150358294 150358379 -77166199 - HsTC2 DNA Tc2 -1817 81 1 515 261 50 0 chr3 150359117 150359236 -77165342 - MIR SINE MIR -81 181 57 * 965 300 21 24 chr3 150359228 150359565 -77165013 + L2 LINE L2 1848 2183 -1131 619 219 7 34 chr3 150359565 150359711 -77164867 - MER20 DNA MER1_type 0 219 78 1266 215 210 5 chr3 150359728 150360100 -77164478 + L2 LINE L2 2226 2673 -641 529 333 48 56 chr3 150360151 150360613 -77163965 + L1M4 LINE L1 2674 3131 -3015 250 299 11 0 chr3 150360770 150360857 -77163721 - L1ME LINE L1 -449 5672 5585 865 189 0 6 chr3 150362240 150362415 -77162163 - MER3 DNA MER1_type 0 209 36 1038 136 5 48 chr3 150362518 150362624 -77161954 + L1PB1 LINE L1 2 96 -6767 2465 4 0 0 chr3 150362624 150362890 -77161688 + AluYa5 SINE Alu 34 299 -12 1038 136 5 48 chr3 150362890 150362989 -77161589 + L1PB1 LINE L1 96 198 -6665 13751 192 26 8 chr3 150362989 150368870 -77155708 + L1PB1 LINE L1 632 6866 -1 2509 110 13 8 chr3 150369238 150369611 -77154967 + THE1C LTR MaLR 1 375 0 2419 97 3 11 chr3 150369611 150369981 -77154597 + THE1C-int LTR MaLR 1 367 -1213 2222 97 34 11 chr3 150369983 150370333 -77154245 + THE1C-int LTR MaLR 1223 1580 0 2664 99 8 8 chr3 150370333 150370708 -77153870 + THE1C LTR MaLR 1 375 0 522 168 228 102 chr3 150370764 150370854 -77153724 - MER5A DNA MER1_type 0 189 112 2248 112 0 0 chr3 150370854 150371150 -77153428 - AluY SINE Alu -15 296 1 522 168 228 102 chr3 150371150 150371226 -77153352 - MER5A DNA MER1_type -77 112 2 305 324 48 19 chr3 150371335 150371440 -77153138 + MIR SINE MIR 16 123 -85 359 281 158 0 chr3 150372141 150372287 -77152291 - MIR SINE MIR -12 250 82 203 319 88 11 chr3 150372526 150372617 -77151961 - MIR SINE MIR -115 147 50 1172 81 29 6 chr3 150373274 150373448 -77151130 + L1MA1 LINE L1 6125 6302 0 324 279 271 0 chr3 150374310 150374439 -77150139 + MIR SINE MIR 20 183 -79 1701 192 3 3 chr3 150374794 150375080 -77149498 + AluJb SINE Alu 1 286 -26 265 377 92 23 chr3 150375125 150375255 -77149323 + L2 LINE L2 3134 3272 0 180 111 0 0 chr3 150375444 150375471 -77149107 + (TGAA)n Simple_repeat Simple_repeat 2 28 0 258 257 0 43 chr3 150375472 150375542 -77149036 - MIR SINE MIR -88 174 108 342 343 51 0 chr3 150376263 150376438 -77148140 + MIR SINE MIR 39 222 -40 1498 215 133 75 chr3 150376484 150377085 -77147493 - MLT1E1 LTR MaLR -2 652 17 2523 30 40 0 chr3 150377179 150377477 -77147101 + AluY SINE Alu 1 310 -1 332 260 110 27 chr3 150377642 150377788 -77146790 + MIR SINE MIR 59 216 -46 284 337 148 15 chr3 150378271 150378473 -77146105 + MIR SINE MIR 18 246 -16 311 326 104 7 chr3 150378496 150378631 -77145947 + MIR3 SINE MIR 33 180 -28 246 305 37 0 chr3 150379421 150379503 -77145075 + L2 LINE L2 2211 2295 -1019 421 250 0 0 chr3 150379507 150379595 -77144983 + MER81 DNA DNA 6 93 -21 221 303 57 51 chr3 150379598 150379773 -77144805 + L2 LINE L2 2308 2483 -831 417 314 102 51 chr3 150379821 150379844 -77144734 + L2 LINE L2 2602 2622 -692 2320 62 13 13 chr3 150379844 150380151 -77144427 - AluY SINE Alu -4 307 1 417 314 102 51 chr3 150380151 150380461 -77144117 + L2 LINE L2 2622 2952 -362 779 207 11 17 chr3 150380685 150380864 -77143714 - MER5B DNA MER1_type 0 178 1 1498 141 36 11 chr3 150380953 150381229 -77143349 - L1PA13 LINE L1 -3 6160 5878 616 234 57 0 chr3 150381475 150381633 -77142945 + MER20 DNA MER1_type 34 200 -19 1011 171 12 0 chr3 150381873 150382037 -77142541 + MER5A DNA MER1_type 15 180 -9 219 146 0 0 chr3 150383231 150383272 -77141306 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 755 251 10 44 chr3 150383272 150383475 -77141103 - L2 LINE L2 0 3313 3118 1254 196 41 74 chr3 150383672 150384156 -77140422 + LTR37B LTR ERV1 1 468 0 2154 106 24 0 chr3 150384236 150384408 -77140170 - AluSc SINE Alu -9 300 117 351 0 0 0 chr3 150384408 150384447 -77140131 + (TG)n Simple_repeat Simple_repeat 2 40 0 2154 106 24 0 chr3 150384447 150384567 -77140011 - AluSc SINE Alu -192 117 1 32 43 0 0 chr3 150384807 150384853 -77139725 + AT_rich Low_complexity Low_complexity 1 46 0 21 36 0 0 chr3 150385828 150385856 -77138722 + AT_rich Low_complexity Low_complexity 1 28 0 692 163 41 0 chr3 150386668 150386815 -77137763 - L1MB3 LINE L1 -3 6180 6028 477 165 0 0 chr3 150387220 150387299 -77137279 - MER3 DNA MER1_type -123 86 8 490 301 44 0 chr3 150387315 150387451 -77137127 + MIR SINE MIR 22 163 -99 772 292 136 18 chr3 150387451 150387834 -77136744 + MLT1J2 LTR MaLR 1 428 -22 277 325 0 0 chr3 150387857 150387940 -77136638 + MIR SINE MIR 180 262 0 222 361 39 8 chr3 150387949 150388079 -77136499 + MIR SINE MIR 20 153 -109 195 100 0 0 chr3 150389119 150389149 -77135429 + (CATATA)n Simple_repeat Simple_repeat 3 32 0 6925 67 8 0 chr3 150389254 150390181 -77134397 + L1PA8 LINE L1 5225 6158 -14 213 346 12 12 chr3 150390300 150390381 -77134197 + MER5A DNA MER1_type 1 81 -108 376 211 58 29 chr3 150391463 150391567 -77133011 + MIR SINE MIR 110 216 -46 896 121 8 0 chr3 150391849 150391973 -77132605 + FLAM_C SINE Alu 1 125 -18 2052 141 0 0 chr3 150392165 150392487 -77132091 + AluSx SINE Alu 20 312 0 232 289 49 0 chr3 150392604 150392746 -77131832 + L1 LINE L1 4457 4605 -1541 304 311 50 0 chr3 150392938 150393099 -77131479 + L1MC4a LINE L1 6067 6235 -1573 364 148 0 191 chr3 150393247 150393436 -77131142 + L1MC5 LINE L1 6809 6961 -1000 627 253 22 60 chr3 150393503 150393871 -77130707 + L1MC5 LINE L1 7411 7764 -197 309 185 0 25 chr3 150393982 150394063 -77130515 + ORSL DNA AcHobo 138 216 -59 222 209 23 0 chr3 150394069 150394112 -77130466 + MER5A DNA MER1_type 137 180 -9 744 142 86 146 chr3 150394122 150394355 -77130223 + MER20 DNA MER1_type 1 219 0 290 253 10 0 chr3 150394356 150394455 -77130123 + CT-rich Low_complexity Low_complexity 4 103 0 1028 246 65 32 chr3 150395647 150396041 -77128537 + MLT1H LTR MaLR 2 450 -99 20084 146 20 51 chr3 150396141 150397074 -77127504 - L1 LINE L1 -3284 4281 3320 1831 164 0 11 chr3 150397074 150397403 -77127175 - AluSx SINE Alu 0 326 1 20084 146 20 51 chr3 150397403 150397421 -77127157 - L1 LINE L1 -4245 3320 3303 16873 153 8 24 chr3 150397421 150401401 -77123177 - L1PA12 LINE L1 -2 6166 2228 20084 146 20 51 chr3 150401401 150401720 -77122858 - L1 LINE L1 -4262 3303 2976 3246 90 11 0 chr3 150401720 150402175 -77122403 - L1PB1 LINE L1 0 6151 5692 20084 146 20 51 chr3 150402175 150405308 -77119270 - L1 LINE L1 -4589 2976 13 605 269 41 58 chr3 150406104 150406346 -77118232 + MIR SINE MIR 25 262 0 2188 89 0 0 chr3 150406546 150406827 -77117751 + AluSg1 SINE Alu 1 281 -28 273 365 48 24 chr3 150408312 150408438 -77116140 + L2 LINE L2 3144 3272 0 234 91 0 0 chr3 150408879 150408912 -77115666 + (TGAA)n Simple_repeat Simple_repeat 4 36 0 194 382 69 20 chr3 150408980 150409226 -77115352 - L2 LINE L2 -419 2895 2638 436 385 20 0 chr3 150410164 150410364 -77114214 + MIR SINE MIR 48 251 -11 6426 177 31 15 chr3 150410364 150412765 -77111813 + L1PA16 LINE L1 3722 6166 0 317 306 141 24 chr3 150413260 150413430 -77111148 + MIR SINE MIR 58 247 -15 194 188 0 0 chr3 150413402 150413434 -77111144 + L2 LINE L2 3265 3296 -17 * 1243 204 5 0 chr3 150413538 150413759 -77110819 + MER58A DNA MER1_type 2 223 -1 2119 179 62 20 chr3 150414266 150414768 -77109810 - Charlie1b DNA MER1_type 0 523 1 347 308 0 0 chr3 150414973 150415051 -77109527 + MIR3 SINE MIR 82 159 -49 21 0 0 0 chr3 150415412 150415433 -77109145 + AT_rich Low_complexity Low_complexity 1 21 0 1258 267 106 39 chr3 150415454 150416006 -77108572 + MLT1H1 LTR MaLR 1 545 -10 235 362 114 0 chr3 150416045 150416150 -77108428 + MIR3 SINE MIR 85 201 -7 191 276 97 92 chr3 150416912 150417097 -77107481 + L2 LINE L2 3126 3311 -2 234 259 0 0 chr3 150417097 150417151 -77107427 + (TGAA)n Simple_repeat Simple_repeat 1 54 0 271 256 12 12 chr3 150417174 150417260 -77107318 + MIR SINE MIR 166 251 -11 2216 96 6 13 chr3 150418996 150419308 -77105270 + AluY SINE Alu 1 310 -1 2270 118 0 0 chr3 150419675 150419979 -77104599 + AluSg SINE Alu 1 304 -6 971 176 25 29 chr3 150420252 150420456 -77104122 + MER3 DNA MER1_type 2 204 -5 207 0 0 0 chr3 150421100 150421123 -77103455 + (T)n Simple_repeat Simple_repeat 1 23 0 4800 32 0 2 chr3 150421737 150422303 -77102275 + L1PA5 LINE L1 5590 6154 0 771 206 153 106 chr3 150422370 150422774 -77101804 + MLT1F1 LTR MaLR 15 437 -130 362 180 42 0 chr3 150422838 150422929 -77101649 + MLT1F1 LTR MaLR 449 543 -24 251 274 0 0 chr3 150423270 150423332 -77101246 + (ATG)n Simple_repeat Simple_repeat 1 62 0 499 303 0 8 chr3 150423380 150423499 -77101079 - L2 LINE L2 -1 3271 3154 264 225 113 28 chr3 150424861 150424932 -77099646 - L2 LINE L2 -12 3301 3225 1029 261 67 41 chr3 150425325 150425742 -77098836 + LTR16C LTR ERVL 64 491 0 183 359 0 0 chr3 150425890 150425943 -77098635 - MIR SINE MIR -129 133 81 657 171 132 7 chr3 150425943 150426095 -77098483 + MLT1B LTR MaLR 1 171 -219 237 108 0 0 chr3 150426132 150426169 -77098409 + (TCCC)n Simple_repeat Simple_repeat 1 37 0 509 188 181 7 chr3 150426352 150426496 -77098082 + MER5A DNA MER1_type 21 189 0 418 318 47 20 chr3 150427433 150427581 -77096997 - MIR SINE MIR -1 261 110 2953 124 26 65 chr3 150427584 150428218 -77096360 + MER4B LTR ERV1 2 778 -1 610 281 79 9 chr3 150428222 150428450 -77096128 - MLT1D LTR MaLR 0 467 224 617 234 32 19 chr3 150428494 150428648 -77095930 - MLT1D LTR MaLR -349 156 1 578 241 9 0 chr3 150428648 150428760 -77095818 - MIR SINE MIR -149 113 1 362 180 190 20 chr3 150428985 150429085 -77095493 + MIR SINE MIR 82 198 -64 441 296 95 65 chr3 150429190 150429622 -77094956 - L2 LINE L2 -722 2592 2148 314 296 117 38 chr3 150429885 150430063 -77094515 + L1ME LINE L1 5493 5696 -425 375 78 0 0 chr3 150430063 150430114 -77094464 + (TA)n Simple_repeat Simple_repeat 1 51 0 314 296 117 38 chr3 150430114 150430175 -77094403 + L1ME LINE L1 5696 5751 -370 430 314 67 31 chr3 150430693 150430916 -77093662 + MIR SINE MIR 12 242 -20 * 599 237 227 30 chr3 150430915 150431210 -77093368 + L2 LINE L2 2942 3294 -19 309 367 43 8 chr3 150431644 150431810 -77092768 + MIR SINE MIR 3 172 -36 512 242 16 0 chr3 150432160 150432288 -77092290 + MER94 DNA DNA 5 134 0 254 246 0 0 chr3 150433398 150433467 -77091111 - L1ME4a LINE L1 -85 6036 5968 180 0 0 0 chr3 150434512 150434532 -77090046 + (AGATG)n Simple_repeat Simple_repeat 3 22 0 525 301 55 0 chr3 150434628 150434791 -77089787 - MIR3 SINE MIR -7 201 30 988 178 27 5 chr3 150435725 150435910 -77088668 + MER5A DNA MER1_type 1 189 0 650 219 30 24 chr3 150436602 150436766 -77087812 + MIR SINE MIR 76 240 -22 194 174 0 87 chr3 150437377 150437423 -77087155 + MIR SINE MIR 82 123 -85 663 330 13 9 chr3 150437783 150438013 -77086565 - MIR SINE MIR -20 242 12 211 231 31 15 chr3 150438845 150438910 -77085668 + L2 LINE L2 2589 2654 -660 1795 122 44 4 chr3 150438944 150439397 -77085181 - AluSg SINE Alu 0 464 1 1915 130 14 14 chr3 150439775 150440067 -77084511 - AluY SINE Alu -1 310 19 303 286 200 7 chr3 150440400 150440540 -77084038 - MIR SINE MIR -73 189 23 816 116 0 0 chr3 150440663 150440775 -77083803 + AluY SINE Alu 1 112 -199 452 35 0 0 chr3 150440775 150440833 -77083745 + AluY SINE Alu 242 299 -12 1217 206 119 63 chr3 150440925 150441431 -77083147 - L1ME1 LINE L1 -6 6160 5627 695 194 14 0 chr3 150441434 150441592 -77082986 - L1P5 LINE L1 -661 5493 5324 646 266 92 6 chr3 150441605 150441778 -77082800 - MIR SINE MIR -74 188 1 2374 51 34 0 chr3 150441979 150442275 -77082303 + AluY SINE Alu 1 306 -5 245 206 63 0 chr3 150443503 150443566 -77081012 + MER104 DNA Tc2 43 109 -71 * 449 144 29 29 chr3 150443557 150443661 -77080917 + MER104 DNA Tc2 43 146 -34 215 353 15 0 chr3 150443749 150443817 -77080761 - MIR SINE MIR -188 74 6 2315 171 36 51 chr3 150443823 150444297 -77080281 + MLT1C LTR MaLR 1 467 0 508 150 321 0 chr3 150445002 150445142 -77079436 + MER3 DNA MER1_type 2 186 -23 415 199 205 53 chr3 150445252 150445403 -77079175 + MER5B DNA MER1_type 2 175 -3 394 237 101 29 chr3 150445875 150446082 -77078496 + LTR33 LTR ERVL 245 466 -55 565 290 87 6 chr3 150446316 150446499 -77078079 - MIR SINE MIR -1 261 64 1616 161 4 25 chr3 150447963 150448243 -77076335 + AluJo SINE Alu 9 282 -30 268 331 68 7 chr3 150448781 150448929 -77075649 - MER103 DNA DNA -1 165 9 27 0 0 0 chr3 150449136 150449163 -77075415 + AT_rich Low_complexity Low_complexity 1 27 0 2250 85 24 3 chr3 150449693 150449987 -77074591 + AluSc SINE Alu 3 302 -7 1786 87 0 4 chr3 150450468 150450698 -77073880 - AluSc SINE Alu -4 305 77 220 356 87 9 chr3 150451303 150451418 -77073160 - L2 LINE L2 0 3272 3149 258 265 76 47 chr3 150451751 150451937 -77072641 + L3 LINE CR1 1317 1576 -1 188 61 61 0 chr3 150451976 150452009 -77072569 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1490 218 129 20 chr3 150452182 150452195 -77072383 + MER74A LTR ERVL 3 13 -545 1535 145 0 0 chr3 150452195 150452422 -77072156 - AluSq SINE Alu -1 312 86 1490 218 129 20 chr3 150452422 150452898 -77071680 + MER74A LTR ERVL 13 545 -13 397 336 28 0 chr3 150453080 150453223 -77071355 - MIR SINE MIR -83 179 33 1711 268 161 12 chr3 150453639 150454566 -77070012 + L2 LINE L2 2164 3216 -97 260 200 0 0 chr3 150455328 150455378 -77069200 + MLT1L LTR MaLR 336 385 -230 1933 223 59 13 chr3 150455398 150455855 -77068723 + MLT2B1 LTR ERVL 1 478 -42 207 204 0 0 chr3 150455857 150455906 -77068672 + (TA)n Simple_repeat Simple_repeat 1 49 0 692 315 104 24 chr3 150455925 150456513 -77068065 + L1M4 LINE L1 2676 3310 -2836 512 314 49 18 chr3 150456654 150457040 -77067538 + L1M4 LINE L1 3520 3917 -2229 22 56 0 0 chr3 150457090 150457126 -77067452 + AT_rich Low_complexity Low_complexity 1 36 0 1957 14 0 0 chr3 150457128 150457345 -77067233 + AluY SINE Alu 95 311 0 23 33 0 0 chr3 150457586 150457616 -77066962 + AT_rich Low_complexity Low_complexity 1 30 0 4882 202 50 6 chr3 150457717 150459477 -77065101 - L1MD1 LINE L1 -1 6635 4802 5565 149 10 11 chr3 150459490 150460810 -77063768 - L1MA6 LINE L1 -4 6296 4971 676 202 9 0 chr3 150460908 150461022 -77063556 - FLAM_A SINE Alu -18 115 1 1548 237 24 2 chr3 150461063 150461485 -77063093 - L1MD1 LINE L1 -1853 4687 4257 3794 244 50 43 chr3 150461612 150463184 -77061394 - L1MD1 LINE L1 -2299 4241 2659 881 212 101 27 chr3 150463187 150463551 -77061027 - MSTC LTR MaLR -2 426 1 363 208 58 12 chr3 150463551 150463667 -77060911 - L1MD1 LINE L1 -3890 2650 2544 5243 216 71 29 chr3 150463778 150464930 -77059648 - L1MD1 LINE L1 -4329 2211 865 218 56 28 0 chr3 150464930 150464966 -77059612 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 5243 216 71 29 chr3 150464966 150465859 -77058719 - L1MD1 LINE L1 -5675 865 11 232 310 30 0 chr3 150465980 150466080 -77058498 + L1ME3 LINE L1 4552 4654 -1492 37 23 0 0 chr3 150466163 150466207 -77058371 + AT_rich Low_complexity Low_complexity 1 44 0 234 189 0 0 chr3 150466234 150466287 -77058291 + L1ME3 LINE L1 4776 4828 -1318 543 289 54 60 chr3 150466716 150467349 -77057229 + L1ME3 LINE L1 5264 5826 -336 1210 237 140 55 chr3 150467920 150468427 -77056151 + MER119 DNA MER1_type 10 559 -24 2689 88 6 0 chr3 150469912 150470265 -77054313 + THE1A LTR MaLR 1 355 0 11890 87 8 1 chr3 150470265 150471832 -77052746 + THE1A-int LTR MaLR 1 1579 -1 2638 90 3 0 chr3 150471833 150472187 -77052391 + THE1A LTR MaLR 1 355 0 466 317 36 0 chr3 150473424 150473591 -77050987 - MIR SINE MIR -39 223 51 876 209 0 0 chr3 150474378 150474536 -77050042 - FRAM SINE Alu -7 169 12 434 313 48 0 chr3 150475492 150475639 -77048939 - MIR SINE MIR -27 235 82 331 373 0 0 chr3 150475654 150475772 -77048806 - L2 LINE L2 0 3313 3196 329 299 102 0 chr3 150476863 150476990 -77047588 + L1ME4a LINE L1 5519 5658 -463 898 247 62 4 chr3 150477089 150477332 -77047246 - MIR SINE MIR -5 257 1 329 263 76 80 chr3 150477344 150477568 -77047010 + L1ME4a LINE L1 5833 6055 -66 322 352 21 5 chr3 150477669 150477862 -77046716 + L1ME LINE L1 5458 5653 -468 1655 220 72 16 chr3 150478386 150478831 -77045747 + MER110 LTR ERV1 1 470 -21 742 229 5 73 chr3 150479258 150479450 -77045128 + MIR SINE MIR 9 187 -75 731 228 0 0 chr3 150479624 150479773 -77044805 + MER63A DNA MER1_type 61 209 -1 216 67 0 0 chr3 150480419 150480449 -77044129 + (TG)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chr3 150480955 150480976 -77043602 + AT_rich Low_complexity Low_complexity 1 21 0 272 315 11 11 chr3 150484221 150484313 -77040265 + L2 LINE L2 3161 3252 -61 287 284 53 65 chr3 150484818 150484987 -77039591 + L2 LINE L2 2159 2325 -989 348 188 0 0 chr3 150484988 150485057 -77039521 + (TA)n Simple_repeat Simple_repeat 1 69 0 259 289 0 0 chr3 150485066 150485156 -77039422 + L1MC4 LINE L1 6614 6703 -1339 236 149 21 0 chr3 150485166 150485213 -77039365 + (TATATG)n Simple_repeat Simple_repeat 1 48 0 207 100 0 0 chr3 150485243 150485273 -77039305 + (CATA)n Simple_repeat Simple_repeat 3 32 0 306 0 0 0 chr3 150485294 150485328 -77039250 + (TG)n Simple_repeat Simple_repeat 2 35 0 536 336 52 46 chr3 150485328 150485807 -77038771 + L2 LINE L2 2329 2810 -504 284 294 88 0 chr3 150485870 150485971 -77038607 + MER5B DNA MER1_type 30 129 -49 596 335 10 5 chr3 150485981 150486175 -77038403 + L2 LINE L2 2849 3043 -270 2144 103 0 23 chr3 150486643 150486944 -77037634 - AluSc SINE Alu -15 294 1 4478 156 8 1 chr3 150487709 150488426 -77036152 + MER72 LTR ERV1 1 722 0 208 337 63 0 chr3 150488435 150488530 -77036048 + MIR3 SINE MIR 90 190 -18 1291 222 61 33 chr3 150490247 150490607 -77033971 - MLT1A2 LTR MaLR -4 370 1 189 211 0 26 chr3 150490993 150491031 -77033547 - L2 LINE L2 -221 3051 3015 452 18 18 0 chr3 150492299 150492356 -77032222 + (TG)n Simple_repeat Simple_repeat 2 59 0 1360 164 40 4 chr3 150492385 150492635 -77031943 - L1PA16 LINE L1 -2 6164 5906 211 296 28 14 chr3 150492793 150492864 -77031714 + L2 LINE L2 3242 3313 0 209 105 0 26 chr3 150493732 150493770 -77030808 + (TA)n Simple_repeat Simple_repeat 2 38 0 324 292 0 11 chr3 150493772 150493861 -77030717 + L1MC4 LINE L1 6616 6703 -1339 21 0 0 0 chr3 150493861 150493882 -77030696 + AT_rich Low_complexity Low_complexity 1 21 0 454 289 81 41 chr3 150495509 150495706 -77028872 + MIR SINE MIR 31 235 -27 205 175 25 0 chr3 150495682 150495722 -77028856 + L2 LINE L2 3216 3256 -16 * 351 284 88 0 chr3 150496002 150496104 -77028474 - L2 LINE L2 -21 3292 3182 329 376 7 13 chr3 150496110 150496259 -77028319 + L1MC/D LINE L1 5682 5829 -1979 1187 231 51 7 chr3 150496931 150497226 -77027352 + MLT1H LTR MaLR 11 318 -231 655 206 35 0 chr3 150497256 150497397 -77027181 + MLT1H LTR MaLR 381 526 -23 982 251 108 44 chr3 150497891 150498370 -77026208 - MLT1G1 LTR MaLR -66 501 3 2589 62 0 0 chr3 150498669 150498974 -77025604 + AluY SINE Alu 1 305 -6 319 301 101 18 chr3 150499741 150500027 -77024551 - L1MC4a LINE L1 -1888 5920 5611 34 0 0 0 chr3 150500145 150500179 -77024399 + AT_rich Low_complexity Low_complexity 1 34 0 252 289 145 0 chr3 150500222 150500298 -77024280 + L2 LINE L2 3195 3281 -32 207 0 0 0 chr3 150500320 150500343 -77024235 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 1479 215 108 16 chr3 150500355 150500930 -77023648 + L1MCc LINE L1 1047 1702 -4926 1354 219 49 49 chr3 150501454 150501905 -77022673 + MLT1D LTR MaLR 54 504 -1 192 257 0 0 chr3 150502364 150502434 -77022144 + GA-rich Low_complexity Low_complexity 3 72 0 3687 173 47 117 chr3 150502462 150503882 -77020696 + L1MA10 LINE L1 4999 6333 -1 431 263 101 39 chr3 150504254 150504433 -77020145 - MIR SINE MIR -7 255 66 250 357 131 57 chr3 150505123 150505420 -77019158 - L2 LINE L2 0 3272 2954 208 222 41 6 chr3 150505878 150506049 -77018529 + (TA)n Simple_repeat Simple_repeat 1 177 0 876 293 92 13 chr3 150506637 150507016 -77017562 - MLT1I LTR MaLR 0 409 1 2882 3 0 0 chr3 150507070 150507401 -77017177 - AluYa5 SINE Alu 0 331 1 2453 208 50 8 chr3 150508083 150508602 -77015976 - MER87 LTR ERV1 0 541 1 601 196 0 3 chr3 150509368 150509499 -77015079 - L1ME1 LINE L1 -2 6332 6046 653 278 52 85 chr3 150509640 150510028 -77014550 - L2 LINE L2 -164 3149 2776 553 213 178 0 chr3 150511018 150511168 -77013410 + MER5A DNA MER1_type 6 186 -3 243 301 147 14 chr3 150511194 150511316 -77013262 - MIR SINE MIR -70 192 47 2182 136 0 0 chr3 150511316 150511618 -77012960 + AluSg SINE Alu 1 302 -8 243 301 147 14 chr3 150511618 150511638 -77012940 - MIR SINE MIR -215 47 31 408 104 0 0 chr3 150511958 150512025 -77012553 + (CA)n Simple_repeat Simple_repeat 2 68 0 405 281 44 22 chr3 150512457 150512592 -77011986 + MIR SINE MIR 29 166 -96 1245 273 78 12 chr3 150512635 150513057 -77011521 - LTR16A LTR ERVL 0 450 1 274 275 50 0 chr3 150513237 150513317 -77011261 - MIR SINE MIR -70 192 109 387 224 26 26 chr3 150513725 150513841 -77010737 - LTR67 LTR ERVL -3 554 439 2210 116 0 10 chr3 150515324 150515635 -77008943 - AluSg SINE Alu -2 308 1 385 272 95 19 chr3 150515688 150515846 -77008732 - MIR SINE MIR -6 256 87 199 220 34 34 chr3 150518076 150518135 -77006443 + L2 LINE L2 3254 3312 -1 518 314 84 42 chr3 150519135 150519177 -77005401 - L1ME4a LINE L1 0 6121 6082 2096 144 0 0 chr3 150519177 150519482 -77005096 - AluSx SINE Alu -7 305 1 518 314 84 42 chr3 150519482 150519892 -77004686 - L1ME4a LINE L1 -39 6082 5650 331 179 77 13 chr3 150519914 150519992 -77004586 + MLT1L LTR MaLR 7 89 -526 564 298 65 22 chr3 150520055 150520330 -77004248 + MLT1L LTR MaLR 175 461 -154 246 196 0 0 chr3 150520359 150520405 -77004173 + MLT1L LTR MaLR 568 613 -2 2390 115 27 33 chr3 150521259 150521625 -77002953 + THE1B LTR MaLR 1 364 0 241 349 147 0 chr3 150522262 150522371 -77002207 - MIR SINE MIR -118 144 20 454 252 89 7 chr3 150524346 150524481 -77000097 + MIR SINE MIR 21 166 -96 5560 125 24 17 chr3 150524783 150526837 -76997741 + L1PA15 LINE L1 4102 6165 0 195 312 32 32 chr3 150527729 150527822 -76996756 + MIR SINE MIR 37 129 -133 279 133 0 0 chr3 150528452 150528497 -76996081 + (CA)n Simple_repeat Simple_repeat 2 46 0 214 234 78 16 chr3 150529210 150529274 -76995304 - MIR SINE MIR -37 225 158 236 255 39 39 chr3 150529587 150529689 -76994889 + LTR67 LTR ERVL 413 514 -43 277 345 149 0 chr3 150530093 150530267 -76994311 - L3 LINE CR1 -7 1570 1371 777 313 52 12 chr3 150530479 150530808 -76993770 + LTR16C LTR ERVL 150 491 0 436 320 91 5 chr3 150530921 150531118 -76993460 + MIR SINE MIR 20 233 -29 361 180 135 11 chr3 150531133 150531222 -76993356 - MIR SINE MIR -66 196 97 524 312 35 0 chr3 150531223 150531422 -76993156 + L2 LINE L2 2850 3055 -258 461 321 56 32 chr3 150531612 150531631 -76992947 - L1MEd LINE L1 -5359 760 743 417 39 0 0 chr3 150531631 150531682 -76992896 + (TC)n Simple_repeat Simple_repeat 1 51 0 461 321 56 32 chr3 150531682 150531911 -76992667 - L1MEd LINE L1 -5376 743 506 304 274 61 49 chr3 150532154 150532318 -76992260 - L1MEd LINE L1 -5942 177 12 417 281 112 11 chr3 150532417 150532595 -76991983 - MIR SINE MIR -2 260 65 302 266 208 23 chr3 150532639 150532812 -76991766 + MIR SINE MIR 58 262 0 730 316 89 10 chr3 150533215 150533620 -76990958 - LTR16A LTR ERVL 0 450 14 186 305 121 75 chr3 150533699 150533873 -76990705 + L2 LINE L2 3086 3267 -5 25 0 0 0 chr3 150534006 150534031 -76990547 + AT_rich Low_complexity Low_complexity 1 25 0 415 267 98 24 chr3 150534317 150534807 -76989771 + L1ME4a LINE L1 5316 5901 -220 279 0 0 0 chr3 150534989 150535020 -76989558 + (CA)n Simple_repeat Simple_repeat 2 32 0 240 35 0 0 chr3 150535019 150535048 -76989530 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 386 307 25 43 chr3 150535193 150535356 -76989222 + MIR SINE MIR 10 169 -93 769 248 40 22 chr3 150535378 150535600 -76988978 + MIR SINE MIR 5 230 -32 334 276 37 45 chr3 150536543 150536677 -76987901 + L2 LINE L2 2950 3082 -190 1826 222 110 6 chr3 150536790 150537461 -76987117 - Charlie2 DNA MER1_type -266 2596 1856 442 236 118 0 chr3 150537597 150537724 -76986854 - Charlie2 DNA MER1_type -2713 149 8 971 176 25 29 chr3 150538343 150538547 -76986031 + MER3 DNA MER1_type 2 204 -5 180 0 0 0 chr3 150539190 150539210 -76985368 + (T)n Simple_repeat Simple_repeat 1 20 0 588 253 66 6 chr3 150539804 150539970 -76984608 - MER69A DNA AcHobo 0 177 2 505 307 33 7 chr3 150540382 150540532 -76984046 + MIR SINE MIR 34 187 -75 256 173 77 0 chr3 150540708 150540760 -76983818 + L2 LINE L2 3258 3313 0 225 227 0 0 chr3 150541468 150541512 -76983066 - MIR SINE MIR -64 144 101 334 179 26 26 chr3 150541628 150541706 -76982872 + MER117 DNA MER1_type 87 164 -33 347 308 0 0 chr3 150542061 150542139 -76982439 + MIR3 SINE MIR 82 159 -49 21 0 0 0 chr3 150542500 150542521 -76982057 + AT_rich Low_complexity Low_complexity 1 21 0 673 266 86 43 chr3 150542542 150542955 -76981623 + MLT1H1 LTR MaLR 1 402 -153 1990 128 17 7 chr3 150543247 150543536 -76981042 + AluSg SINE Alu 5 296 -14 1592 179 29 39 chr3 150544212 150544524 -76980054 - AluJb SINE Alu -3 309 1 195 100 0 0 chr3 150544586 150544616 -76979962 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1551 193 0 29 chr3 150544776 150545050 -76979528 + AluJo SINE Alu 1 266 -46 300 27 0 0 chr3 150545065 150545102 -76979476 + (CAAAA)n Simple_repeat Simple_repeat 2 38 0 1404 249 116 4 chr3 150546212 150546693 -76977885 - L1ME2 LINE L1 -9 6155 5621 627 156 18 28 chr3 150546744 150546853 -76977725 + FRAM SINE Alu 32 139 -37 215 0 67 0 chr3 150546861 150546891 -76977687 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 2107 133 25 19 chr3 150546939 150547301 -76977277 - THE1B LTR MaLR 0 364 1 276 213 225 12 chr3 150547486 150547566 -76977012 + L2 LINE L2 3171 3267 -5 866 254 151 36 chr3 150548197 150548878 -76975700 + L2 LINE L2 2459 3313 0 758 253 82 18 chr3 150549406 150549786 -76974792 + MER113 DNA MER1_type? 89 492 -29 339 349 57 31 chr3 150549793 150549985 -76974593 + MIR SINE MIR 14 210 -52 273 200 67 0 chr3 150550215 150550275 -76974303 + MLT1A2 LTR MaLR 4 67 -307 2351 193 31 7 chr3 150550461 150550918 -76973660 + MLT1A1-int LTR MaLR 1268 1735 0 1839 174 34 3 chr3 150550955 150551282 -76973296 + MLT1A1 LTR MaLR 29 365 0 1813 168 0 16 chr3 150551439 150551743 -76972835 + AluJb SINE Alu 1 299 -13 583 293 67 38 chr3 150553003 150553274 -76971304 + L1MD2 LINE L1 2 287 -6253 2165 123 0 0 chr3 150553274 150553567 -76971011 + AluSx SINE Alu 1 293 -19 583 293 67 38 chr3 150553567 150553640 -76970938 + L1MD2 LINE L1 287 356 -6184 1676 200 94 16 chr3 150554219 150554664 -76969914 + L1MD2 LINE L1 4106 4585 -1955 3185 197 61 57 chr3 150554672 150555911 -76968667 + L1MD2 LINE L1 5455 6699 -54 816 234 80 0 chr3 150555905 150556131 -76968447 - L1MB8 LINE L1 -1 6177 5934 * 323 105 0 18 chr3 150556131 150556188 -76968390 + L1MC4a LINE L1 7753 7808 0 180 245 0 0 chr3 150556825 150556878 -76967700 + (TA)n Simple_repeat Simple_repeat 1 53 0 260 290 12 89 chr3 150557053 150557456 -76967122 + L1ME4a LINE L1 5541 5912 -209 24 32 0 0 chr3 150557456 150557487 -76967091 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3 150557566 150557594 -76966984 + AT_rich Low_complexity Low_complexity 1 28 0 291 389 54 6 chr3 150557775 150557942 -76966636 + MIR3 SINE MIR 19 193 -15 2061 127 35 44 chr3 150559391 150559731 -76964847 + MER1B DNA MER1_type 1 337 0 277 314 0 0 chr3 150559788 150559858 -76964720 + LTR16A LTR ERVL 64 133 -317 204 40 0 0 chr3 150560758 150560783 -76963795 + (A)n Simple_repeat Simple_repeat 1 25 0 305 268 49 32 chr3 150561692 150561815 -76962763 + MIR SINE MIR 106 230 -32 2011 108 47 24 chr3 150562284 150562581 -76961997 - AluSx SINE Alu -8 304 1 207 252 149 19 chr3 150562678 150562785 -76961793 - MIR SINE MIR 0 262 142 436 350 111 4 chr3 150563246 150563472 -76961106 - MIR SINE MIR -4 258 9 792 207 120 37 chr3 150564051 150564268 -76960310 + MIR SINE MIR 6 240 -22 325 295 8 39 chr3 150564861 150564990 -76959588 - MLT1G1 LTR MaLR -300 295 171 234 0 0 0 chr3 150566984 150567010 -76957568 + (A)n Simple_repeat Simple_repeat 1 26 0 683 268 12 93 chr3 150567142 150567279 -76957299 + MLT1H LTR MaLR 40 187 -362 1942 158 129 5 chr3 150567279 150567660 -76956918 - MSTA LTR MaLR 0 428 1 683 268 12 93 chr3 150567660 150567865 -76956713 + MLT1H LTR MaLR 187 354 -195 21 36 0 0 chr3 150568158 150568186 -76956392 + AT_rich Low_complexity Low_complexity 1 28 0 356 261 87 11 chr3 150568378 150568470 -76956108 + MIR SINE MIR 35 133 -129 181 268 0 89 chr3 150568500 150568556 -76956022 + L2 LINE L2 3210 3260 -12 251 303 119 9 chr3 150568643 150568752 -76955826 - L2 LINE L2 -9 3304 3184 * 646 270 185 0 chr3 150568751 150568940 -76955638 - MIR SINE MIR -31 231 8 23 0 0 0 chr3 150569311 150569334 -76955244 + AT_rich Low_complexity Low_complexity 1 23 0 186 366 0 14 chr3 150569719 150569790 -76954788 + MIR3 SINE MIR 3 72 -136 212 307 57 23 chr3 150569816 150569904 -76954674 - MIR3 SINE MIR -13 195 105 3225 243 83 24 chr3 150570315 150572580 -76951998 + L1ME2 LINE L1 3758 6164 0 210 292 0 28 chr3 150572742 150572814 -76951764 + CT-rich Low_complexity Low_complexity 2 71 0 207 100 0 0 chr3 150572823 150572853 -76951725 + (TCC)n Simple_repeat Simple_repeat 3 32 0 186 43 0 0 chr3 150573730 150573753 -76950825 + (TG)n Simple_repeat Simple_repeat 1 23 0 22 0 0 0 chr3 150573916 150573938 -76950640 + AT_rich Low_complexity Low_complexity 1 22 0 475 210 0 0 chr3 150574324 150574405 -76950173 - AluJ/FLAM SINE Alu -228 84 4 644 249 122 9 chr3 150574742 150574971 -76949607 - MIR SINE MIR -3 259 5 21 0 0 0 chr3 150575000 150575021 -76949557 + AT_rich Low_complexity Low_complexity 1 21 0 224 262 115 49 chr3 150575531 150575653 -76948925 + MIR3 SINE MIR 73 202 -6 23 0 0 0 chr3 150576072 150576095 -76948483 + AT_rich Low_complexity Low_complexity 1 23 0 195 307 68 57 chr3 150576934 150577022 -76947556 + MER5B DNA MER1_type 38 126 -52 281 320 0 0 chr3 150577196 150577274 -76947304 - MER94 DNA DNA -18 116 39 615 248 8 0 chr3 150577573 150577702 -76946876 + MER5B DNA MER1_type 49 178 0 432 0 0 0 chr3 150579429 150579477 -76945101 + (TG)n Simple_repeat Simple_repeat 1 48 0 2169 92 0 7 chr3 150579477 150579759 -76944819 - AluSq SINE Alu -33 280 1 15557 34 3 1 chr3 150580745 150583383 -76941195 - L1PA4 LINE L1 -11 6144 3502 1255 299 41 7 chr3 150583767 150584185 -76940393 - LTR16A LTR ERVL -3 447 16 248 300 0 0 chr3 150584548 150584618 -76939960 - MLT1J LTR MaLR -341 170 101 432 318 23 0 chr3 150585744 150585873 -76938705 + MIR3 SINE MIR 49 180 -28 1151 279 100 13 chr3 150586161 150586630 -76937948 + MLT1J LTR MaLR 2 511 0 228 337 55 58 chr3 150587813 150588122 -76936456 - L2 LINE L2 -6 3307 3000 289 336 123 41 chr3 150588268 150588560 -76936018 - L2 LINE L2 0 3272 2957 259 270 0 16 chr3 150588611 150588674 -76935904 + CT-rich Low_complexity Low_complexity 3 64 0 324 237 0 0 chr3 150588888 150588947 -76935631 + L3b LINE CR1 1198 1256 -327 290 276 82 79 chr3 150589067 150589422 -76935156 + L3b LINE CR1 1111 1466 -117 259 345 70 7 chr3 150589812 150589954 -76934624 + L2 LINE L2 2925 3075 -197 707 240 23 12 chr3 150589954 150590125 -76934453 + MLT1G LTR MaLR 1 173 -422 307 128 0 0 chr3 150590139 150590186 -76934392 - MLT2B1 LTR ERVL 0 397 351 222 118 0 0 chr3 150590187 150590221 -76934357 + (TG)n Simple_repeat Simple_repeat 2 35 0 1137 224 130 50 chr3 150590231 150590684 -76933894 - MLT2B1 LTR ERVL -20 464 2 748 268 92 46 chr3 150590687 150591069 -76933509 + MLT1G LTR MaLR 144 579 -11 425 156 61 0 chr3 150591269 150591378 -76933200 + LTR50 LTR ERVL 407 793 -2 217 349 124 8 chr3 150591637 150591766 -76932812 - L2 LINE L2 -5 3267 3124 2540 60 0 0 chr3 150592110 150592412 -76932166 - AluY SINE Alu -9 302 1 314 309 43 11 chr3 150592419 150592513 -76932065 - L2 LINE L2 -5 3267 3171 306 367 93 0 chr3 150592501 150592651 -76931927 + MIR SINE MIR 43 206 -56 * 294 336 64 8 chr3 150593028 150593153 -76931425 - MIR SINE MIR -74 188 57 5015 25 0 13 chr3 150593266 150593867 -76930711 + L1PA4 LINE L1 5558 6150 -5 1072 129 0 25 chr3 150594101 150594309 -76930269 + AluSg/x SINE Alu 123 326 0 2290 84 0 3 chr3 150594385 150594682 -76929896 + AluY SINE Alu 1 296 -15 561 308 25 107 chr3 150594851 150595205 -76929373 - L2 LINE L2 -43 3229 2905 521 256 78 5 chr3 150595264 150595455 -76929123 - LTR16C LTR ERVL -67 424 220 2431 70 7 0 chr3 150595497 150595796 -76928782 + AluY SINE Alu 1 301 -10 333 272 110 15 chr3 150596084 150596220 -76928358 + MLT1L LTR MaLR 112 260 -355 1478 211 66 8 chr3 150597298 150597691 -76926887 - MLT1C LTR MaLR -6 461 46 5013 134 43 0 chr3 150597975 150598914 -76925664 + L1P LINE L1 3512 4490 -1656 770 248 27 19 chr3 150599085 150599343 -76925235 + L1MB1 LINE L1 5783 6042 -147 2540 60 0 0 chr3 150599754 150600056 -76924522 - AluY SINE Alu -9 302 1 314 309 43 11 chr3 150600063 150600157 -76924421 - L2 LINE L2 -5 3267 3171 306 367 93 0 chr3 150600145 150600295 -76924283 + MIR SINE MIR 43 206 -56 * 294 336 64 8 chr3 150600672 150600797 -76923781 - MIR SINE MIR -74 188 57 5015 25 0 13 chr3 150600910 150601511 -76923067 + L1PA4 LINE L1 5558 6150 -5 1072 129 0 25 chr3 150601745 150601953 -76922625 + AluSg/x SINE Alu 125 328 0 2580 58 0 0 chr3 150602029 150602337 -76922241 + AluY SINE Alu 1 308 -3 2676 251 32 12 chr3 150603501 150604271 -76920307 + L1ME3A LINE L1 5341 6126 -44 348 252 165 10 chr3 150604505 150604608 -76919970 - L2 LINE L2 0 3313 3195 204 296 28 42 chr3 150605300 150605371 -76919207 + L3b LINE CR1 1427 1496 -87 339 377 77 47 chr3 150605486 150605786 -76918792 + L2 LINE L2 2931 3239 -33 2158 68 43 0 chr3 150605802 150606082 -76918496 - AluY SINE Alu -18 293 2 205 244 0 0 chr3 150606082 150606123 -76918455 + L2 LINE L2 3270 3310 -3 2834 208 25 13 chr3 150606615 150607217 -76917361 + MER90 LTR ERV1 6 614 0 225 0 0 0 chr3 150607807 150607832 -76916746 + (CA)n Simple_repeat Simple_repeat 2 26 0 22 88 0 0 chr3 150607888 150607945 -76916633 + AT_rich Low_complexity Low_complexity 1 57 0 420 320 77 28 chr3 150608300 150608357 -76916221 - MIR SINE MIR -72 190 137 436 88 11 132 chr3 150608357 150608393 -76916185 + MADE1 DNA Mariner 1 40 -40 2335 75 17 3 chr3 150608393 150608686 -76915892 - AluY SINE Alu -14 297 1 436 88 11 132 chr3 150608686 150608740 -76915838 + MADE1 DNA Mariner 40 80 0 420 320 77 28 chr3 150608740 150608863 -76915715 - MIR SINE MIR -125 137 1 891 303 178 5 chr3 150608922 150609365 -76915213 + L2 LINE L2 2377 2896 -418 877 102 45 18 chr3 150609366 150609531 -76915047 - L1MB1 LINE L1 -3 6165 6013 868 289 137 8 chr3 150609531 150609888 -76914690 + L2 LINE L2 2910 3312 -1 1948 136 21 51 chr3 150610258 150610633 -76913945 + THE1B LTR MaLR 1 364 0 9721 84 8 125 chr3 150610633 150611213 -76913365 + THE1B-int LTR MaLR 1 647 -933 2485 33 3 0 chr3 150611213 150611514 -76913064 - L1PA2 LINE L1 -3 6152 5851 9721 84 8 125 chr3 150611514 150612722 -76911856 + THE1B-int LTR MaLR 647 1580 0 2215 109 16 48 chr3 150612722 150613098 -76911480 + THE1B LTR MaLR 1 364 0 351 239 26 35 chr3 150613104 150613217 -76911361 + MIR SINE MIR 100 211 -51 244 209 0 0 chr3 150613550 150613593 -76910985 + MLT1G LTR MaLR 34 76 -514 767 299 17 8 chr3 150613648 150613882 -76910696 + MLT1G LTR MaLR 353 588 -2 569 342 104 13 chr3 150614746 150614977 -76909601 - MIR SINE MIR -10 252 1 278 241 0 0 chr3 150615026 150615084 -76909494 - MIR SINE MIR -142 120 63 4558 190 21 27 chr3 150615458 150616952 -76907626 + L1MA10 LINE L1 4837 6324 -10 27 0 0 0 chr3 150616993 150617020 -76907558 + AT_rich Low_complexity Low_complexity 1 27 0 381 154 77 0 chr3 150617020 150617085 -76907493 + L1ME2 LINE L1 6038 6107 -57 2921 105 26 0 chr3 150617090 150617518 -76907060 - L1PA13 LINE L1 0 6163 5725 969 323 70 36 chr3 150617528 150617999 -76906579 + L1MA6 LINE L1 796 1282 -6284 * 5182 220 81 19 chr3 150617977 150620002 -76904576 + L1MA6 LINE L1 2893 5027 -2538 * 5206 157 53 14 chr3 150619999 150621162 -76903416 + L1MA6 LINE L1 6518 7717 -2 276 180 115 0 chr3 150621610 150621671 -76902907 + AluS SINE Alu 3 70 -233 298 274 62 80 chr3 150621671 150621996 -76902582 + L1ME4a LINE L1 5604 5922 -199 419 335 171 14 chr3 150622084 150622436 -76902142 + L3 LINE CR1 700 1106 -471 551 317 39 19 chr3 150622878 150623086 -76901492 + MIR SINE MIR 23 234 -28 485 227 42 25 chr3 150623112 150623231 -76901347 + MIR SINE MIR 1 121 -141 236 106 21 0 chr3 150623236 150623283 -76901295 + L1MA9 LINE L1 6265 6312 0 1840 159 14 14 chr3 150623287 150623582 -76900996 + AluJo SINE Alu 1 295 -17 307 287 0 37 chr3 150623616 150623724 -76900854 + MIR SINE MIR 158 261 -1 854 294 46 31 chr3 150624862 150625188 -76899390 - MER102b DNA MER1_type -10 331 1 294 322 201 0 chr3 150625198 150625372 -76899206 + MIR SINE MIR 20 228 -34 2261 72 6 16 chr3 150625776 150626097 -76898481 + L1M1 LINE L1 5254 5571 -731 416 139 35 58 chr3 150627235 150627321 -76897257 + AluS SINE Alu 1 57 -251 230 250 62 12 chr3 150627379 150627459 -76897119 + LTR33A LTR ERVL 273 356 -167 326 226 0 0 chr3 150627477 150627539 -76897039 + MER63 DNA MER1_type 38 725 -111 * 381 240 0 0 chr3 150627538 150627613 -76896965 + MER63 DNA MER1_type 986 1060 0 198 0 0 0 chr3 150627749 150627771 -76896807 + (TTA)n Simple_repeat Simple_repeat 3 24 0 478 301 99 6 chr3 150628021 150628333 -76896245 + L1ME4a LINE L1 5575 5915 -206 717 292 85 8 chr3 150629228 150629464 -76895114 + MIR SINE MIR 5 258 -4 279 37 37 37 chr3 150631871 150631925 -76892653 + (TTTTG)n Simple_repeat Simple_repeat 2 55 0 6187 30 3 1 chr3 150631929 150632661 -76891917 - L1PA3 LINE L1 -3 6152 5420 955 39 0 0 chr3 150632661 150632790 -76891788 + L1P LINE L1 5273 5401 -754 189 138 0 0 chr3 150633005 150633034 -76891544 + MIR SINE MIR 122 150 -112 188 242 45 45 chr3 150633056 150633122 -76891456 - L2 LINE L2 -9 3304 3239 192 40 0 0 chr3 150633168 150633193 -76891385 + (CA)n Simple_repeat Simple_repeat 1 25 0 268 174 0 0 chr3 150633204 150633250 -76891328 + MER58B DNA MER1_type 175 220 -121 835 192 12 52 chr3 150633293 150633465 -76891113 + MER58B DNA MER1_type 175 339 -2 374 295 27 27 chr3 150633631 150633743 -76890835 - MIR SINE MIR -67 141 30 425 318 190 6 chr3 150634460 150634639 -76889939 + MIR SINE MIR 51 262 0 1093 282 74 26 chr3 150635017 150635520 -76889058 + Charlie7 DNA MER1_type 163 689 -1923 242 261 92 0 chr3 150636029 150636083 -76888495 + LTR33 LTR ERVL 323 382 -139 659 267 104 27 chr3 150636083 150636472 -76888106 - LTR16A1 LTR ERVL -1 456 16 1554 236 60 14 chr3 150636656 150637181 -76887397 + MLT1E LTR MaLR 1 588 -5 387 0 0 0 chr3 150637217 150637260 -76887318 + (TG)n Simple_repeat Simple_repeat 2 44 0 204 288 121 0 chr3 150638181 150638247 -76886331 - L2 LINE L2 -8 3264 3191 439 215 264 7 chr3 150638442 150638586 -76885992 - MER5A DNA MER1_type 0 189 9 4221 152 27 6 chr3 150638753 150639449 -76885129 + MER50 LTR ERV1 1 711 -23 852 251 11 5 chr3 150639450 150639641 -76884937 + MIR SINE MIR 70 261 -1 433 344 21 31 chr3 150639753 150639945 -76884633 - MIR SINE MIR -71 191 2 2216 93 4 0 chr3 150640371 150640673 -76883905 + AluSp SINE Alu 5 307 0 410 260 182 32 chr3 150640723 150640877 -76883701 - MIR SINE MIR -71 191 15 796 237 46 0 chr3 150642321 150642515 -76882063 + MER3 DNA MER1_type 1 203 -6 201 39 0 0 chr3 150643232 150643258 -76881320 + (TC)n Simple_repeat Simple_repeat 2 27 0 458 340 69 5 chr3 150643672 150643860 -76880718 - MIR SINE MIR -7 255 56 433 297 62 21 chr3 150644002 150644147 -76880431 - L2 LINE L2 -2 3311 3161 493 235 17 0 chr3 150644383 150644498 -76880080 + MER103 DNA DNA 48 164 -2 1049 228 110 31 chr3 150644988 150645369 -76879209 + L1ME3A LINE L1 5760 6170 0 222 231 0 0 chr3 150645725 150645777 -76878801 + L2 LINE L2 2703 2754 -560 26 74 0 0 chr3 150646259 150646313 -76878265 + AT_rich Low_complexity Low_complexity 1 54 0 415 346 88 24 chr3 150647204 150647409 -76877169 + MIR SINE MIR 5 222 -40 2678 134 35 9 chr3 150647602 150648036 -76876542 - L1PA16 LINE L1 -9 6157 5713 384 286 29 0 chr3 150648359 150648464 -76876114 + MIR SINE MIR 99 206 -56 2292 124 0 0 chr3 150649093 150649400 -76875178 + AluSx SINE Alu 1 307 -5 613 270 35 17 chr3 150650158 150650332 -76874246 - MER5B DNA MER1_type 0 178 2 288 161 0 0 chr3 150650788 150650850 -76873728 + CT-rich Low_complexity Low_complexity 1 62 0 229 393 103 0 chr3 150651331 150651545 -76873033 - MIR SINE MIR -25 237 2 203 333 8 42 chr3 150652468 150652588 -76871990 - L2 LINE L2 -232 3040 2925 350 281 82 34 chr3 150652706 150652852 -76871726 - MIR SINE MIR 0 262 110 268 341 57 0 chr3 150653185 150653308 -76871270 + L2 LINE L2 3143 3272 0 366 170 28 137 chr3 150653634 150653816 -76870762 + L1ME4a LINE L1 5957 6118 -3 198 0 0 0 chr3 150654867 150654889 -76869689 + (A)n Simple_repeat Simple_repeat 1 22 0 226 352 56 28 chr3 150656039 150656147 -76868431 - LTR33 LTR ERVL -301 220 110 282 182 18 0 chr3 150656287 150656342 -76868236 + MIR SINE MIR 194 249 -13 464 267 33 0 chr3 150657452 150657572 -76867006 + MIR3 SINE MIR 82 205 -3 416 327 165 19 chr3 150658029 150658350 -76866228 - L2 LINE L2 -2 3311 2944 459 111 28 0 chr3 150658351 150658423 -76866155 + AluSq/x SINE Alu 34 107 -205 1622 128 56 12 chr3 150658441 150658692 -76865886 + AluSx SINE Alu 34 295 -17 327 366 191 0 chr3 150658709 150659018 -76865560 - L2 LINE L2 -424 2890 2523 3116 164 5 27 chr3 150659062 150659623 -76864955 + L1MA7 LINE L1 5508 6056 -235 233 340 7 50 chr3 150659665 150659806 -76864772 - L2 LINE L2 -832 2482 2348 965 318 159 45 chr3 150659810 150660086 -76864492 - L2 LINE L2 -1335 1979 1736 2173 71 7 0 chr3 150660086 150660368 -76864210 - L1PA7 LINE L1 0 6154 5871 965 318 159 45 chr3 150660368 150661225 -76863353 - L2 LINE L2 -1578 1736 717 591 285 106 63 chr3 150662657 150663470 -76861108 + HAL1b LINE L1 69 916 -432 22 0 0 0 chr3 150663640 150663662 -76860916 + AT_rich Low_complexity Low_complexity 1 22 0 1916 161 3 0 chr3 150663746 150664037 -76860541 + AluJb SINE Alu 1 292 -20 30 0 0 0 chr3 150664039 150664069 -76860509 + AT_rich Low_complexity Low_complexity 1 30 0 1833 127 72 39 chr3 150664130 150664491 -76860087 - THE1C LTR MaLR 0 375 3 1252 262 96 49 chr3 150664591 150665125 -76859453 + L1MC4a LINE L1 5420 5978 -1830 311 265 69 10 chr3 150665223 150665325 -76859253 - MER94 DNA DNA -13 121 14 246 247 13 39 chr3 150665359 150665436 -76859142 - MIR SINE MIR -9 253 179 600 262 28 7 chr3 150665561 150665702 -76858876 - MIR SINE MIR -98 164 21 227 293 41 41 chr3 150666684 150666776 -76857802 - MIR SINE MIR -6 256 162 1262 209 131 40 chr3 150666776 150667174 -76857404 - MER63B DNA MER1_type -1 435 2 227 293 41 41 chr3 150667174 150667228 -76857350 - MIR SINE MIR -99 163 110 25 90 0 0 chr3 150667702 150667769 -76856809 + AT_rich Low_complexity Low_complexity 1 67 0 187 268 0 0 chr3 150667854 150667895 -76856683 - L2 LINE L2 -10 3262 3222 26 0 0 0 chr3 150667922 150667948 -76856630 + AT_rich Low_complexity Low_complexity 1 26 0 241 288 0 0 chr3 150668019 150668085 -76856493 - L1ME4a LINE L1 -82 6039 5974 387 0 0 0 chr3 150668092 150668135 -76856443 + (TG)n Simple_repeat Simple_repeat 1 43 0 * 468 0 0 0 chr3 150668134 150668186 -76856392 + (GA)n Simple_repeat Simple_repeat 1 52 0 185 114 409 0 chr3 150668470 150668514 -76856064 + MIR3 SINE MIR 121 182 -26 343 346 22 7 chr3 150668526 150668662 -76855916 + MIR SINE MIR 1 138 -124 653 207 47 165 chr3 150668673 150669055 -76855523 - MER46C DNA MER2_type -1 337 1 197 235 161 12 chr3 150669058 150669139 -76855439 + MIR SINE MIR 160 252 -10 200 176 0 39 chr3 150669165 150669216 -76855362 + (TTA)n Simple_repeat Simple_repeat 2 50 0 235 312 68 38 chr3 150669236 150669586 -76854992 + L2 LINE L2 2546 2951 -321 315 267 0 11 chr3 150670717 150670807 -76853771 + MIR SINE MIR 48 136 -126 203 267 139 10 chr3 150670870 150670971 -76853607 - MIR SINE MIR -66 196 83 1163 268 23 49 chr3 150670976 150671447 -76853131 + LTR16B LTR ERVL 6 464 0 2702 157 10 8 chr3 150671687 150672170 -76852408 - L1MB5 LINE L1 -8 6166 5683 3035 234 67 25 chr3 150672174 150672874 -76851704 - L1MB5 LINE L1 -751 5395 4726 180 0 0 0 chr3 150672874 150672894 -76851684 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 5275 66 5 0 chr3 150672898 150673566 -76851012 - L1PA8 LINE L1 -6 6166 5496 3035 234 67 25 chr3 150673566 150673816 -76850762 - L1MB5 LINE L1 -1422 4724 4392 1993 126 35 35 chr3 150673816 150674189 -76850389 + THE1C LTR MaLR 3 375 0 3035 234 67 25 chr3 150674189 150674260 -76850318 - L1MB5 LINE L1 -1754 4392 4325 339 297 9 0 chr3 150674292 150674403 -76850175 - L1MB5 LINE L1 -2060 4086 3975 423 324 133 9 chr3 150674611 150674821 -76849757 + MIR SINE MIR 20 255 -7 337 289 0 0 chr3 150674831 150674928 -76849650 - Zaphod DNA AcHobo -1 4030 3934 228 304 0 0 chr3 150675212 150675268 -76849310 - L2 LINE L2 -3 3269 3214 358 288 21 63 chr3 150675358 150675549 -76849029 + L2 LINE L2 3030 3212 -101 384 260 73 7 chr3 150675549 150675699 -76848879 - L1ME LINE L1 -360 5802 5643 2848 240 3 3 chr3 150675705 150676351 -76848227 + MER82 DNA MER2_type 7 652 -1 421 340 47 25 chr3 150676351 150676669 -76847909 - L1ME LINE L1 -476 5645 5321 1558 231 73 47 chr3 150676676 150677192 -76847386 - L1ME LINE L1 -1459 4687 4105 9918 26 0 202 chr3 150677192 150678929 -76845649 + SVA Other Other 1 1386 0 1558 231 73 47 chr3 150678929 150679268 -76845310 - L1ME LINE L1 -2041 4105 3776 2267 159 38 9 chr3 150679268 150679712 -76844866 + L1MA4 LINE L1 5831 6295 -5 349 352 55 15 chr3 150679727 150679926 -76844652 + L1MEd LINE L1 941 1147 -4972 3714 64 2 0 chr3 150680167 150680639 -76843939 - L1PA5 LINE L1 0 6154 5682 309 282 32 138 chr3 150680754 150681101 -76843477 - L1M4 LINE L1 -1969 4177 3868 442 297 98 76 chr3 150681732 150682099 -76842479 - L1M4 LINE L1 -2327 3819 3445 475 287 73 67 chr3 150682179 150682507 -76842071 + L1ME4a LINE L1 5605 5934 -187 416 303 167 15 chr3 150683791 150683989 -76840589 - MIR SINE MIR -1 261 34 587 210 173 6 chr3 150684014 150684176 -76840402 + MER5A DNA MER1_type 1 189 0 270 242 40 18 chr3 150684184 150684272 -76840306 + MIR SINE MIR 27 115 -93 1733 151 0 78 chr3 150684283 150684628 -76839950 - AluYb8 SINE Alu 0 318 1 2885 6 0 0 chr3 150684658 150684969 -76839609 - AluYa5 SINE Alu 0 311 1 226 223 8 131 chr3 150684974 150685104 -76839474 + MIR SINE MIR 107 220 -42 21 0 0 0 chr3 150685287 150685308 -76839270 + AT_rich Low_complexity Low_complexity 1 21 0 208 169 17 17 chr3 150685758 150685817 -76838761 + GA-rich Low_complexity Low_complexity 3 61 0 304 333 38 54 chr3 150686009 150686054 -76838524 - MIR3 SINE MIR -7 201 157 3800 121 20 34 chr3 150686054 150686666 -76837912 + LTR26 LTR ERV1 1 603 0 304 333 38 54 chr3 150686666 150686806 -76837772 - MIR3 SINE MIR -51 157 19 208 333 14 0 chr3 150687888 150687957 -76836621 + L2 LINE L2 3200 3269 -3 308 213 16 0 chr3 150688243 150688304 -76836274 - L2 LINE L2 -1 3312 3251 28423 104 16 9 chr3 150688625 150695044 -76829534 + L1PA8 LINE L1 6 6480 -7 303 70 0 0 chr3 150695044 150695087 -76829491 - MADE1 DNA Mariner -37 43 1 186 43 0 0 chr3 150695456 150695479 -76829099 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 360 262 223 63 chr3 150695479 150695658 -76828920 + MIR SINE MIR 24 242 -20 641 274 96 68 chr3 150695658 150696056 -76828522 + MLT1I LTR MaLR 1 409 0 360 262 223 63 chr3 150696056 150696082 -76828496 + MIR SINE MIR 242 262 0 28 48 0 0 chr3 150696207 150696249 -76828329 + AT_rich Low_complexity Low_complexity 1 42 0 1858 209 67 74 chr3 150696545 150697100 -76827478 - MLT1H1 LTR MaLR -4 551 1 327 318 137 32 chr3 150697301 150697578 -76827000 + LTR33 LTR ERVL 48 353 -168 266 333 0 0 chr3 150697585 150697660 -76826918 + L2 LINE L2 3193 3267 -5 354 350 25 18 chr3 150698373 150698536 -76826042 + MIR3 SINE MIR 30 193 -15 876 298 12 16 chr3 150699085 150699340 -76825238 - MIR SINE MIR -1 261 8 322 299 28 28 chr3 150699947 150700091 -76824487 + (CATATA)n Simple_repeat Simple_repeat 6 149 0 1938 150 0 6 chr3 150700392 150700706 -76823872 + AluJb SINE Alu 1 312 0 23 33 0 0 chr3 150701574 150701604 -76822974 + AT_rich Low_complexity Low_complexity 1 30 0 2396 102 0 0 chr3 150702463 150702766 -76821812 - AluSg SINE Alu -7 303 1 219 170 0 0 chr3 150703214 150703261 -76821317 + (CA)n Simple_repeat Simple_repeat 2 48 0 2277 128 11 3 chr3 150703363 150703722 -76820856 - L1PB1 LINE L1 -8 6143 5782 10206 177 136 5 chr3 150703835 150707337 -76817241 - L1PBa LINE L1 -2895 3967 5 21 0 0 0 chr3 150708922 150708943 -76815635 + AT_rich Low_complexity Low_complexity 1 21 0 225 356 11 11 chr3 150709415 150709505 -76815073 - MIR3 SINE MIR -116 92 3 1475 275 62 7 chr3 150709825 150710211 -76814367 + LTR16C LTR ERVL 13 429 -62 1676 175 63 14 chr3 150710211 150710559 -76814019 - MLT1A1 LTR MaLR 0 365 1 1475 275 62 7 chr3 150710559 150710626 -76813952 + LTR16C LTR ERVL 429 491 0 483 281 86 36 chr3 150710626 150710847 -76813731 - MIR SINE MIR -18 244 13 770 156 45 84 chr3 150711467 150711646 -76812932 + MER63A DNA MER1_type 39 210 0 1083 70 7 21 chr3 150711856 150711999 -76812579 + AluY SINE Alu 1 141 -170 754 50 0 0 chr3 150711999 150712099 -76812479 + AluSg/x SINE Alu 209 308 -2 688 237 132 0 chr3 150712145 150712297 -76812281 + MER5B DNA MER1_type 1 172 -6 417 196 43 58 chr3 150712418 150712556 -76812022 + L1ME3 LINE L1 5928 6063 -99 2073 125 0 16 chr3 150712628 150712932 -76811646 - AluSq SINE Alu -14 299 1 205 282 39 51 chr3 150713006 150713084 -76811494 - MER5A DNA MER1_type -104 85 9 208 327 106 26 chr3 150713132 150713245 -76811333 - L2 LINE L2 -13 3259 3138 206 281 125 31 chr3 150713257 150713353 -76811225 - L2 LINE L2 0 3272 3168 883 316 111 22 chr3 150713455 150713914 -76810664 - L2 LINE L2 -420 2894 2395 2674 103 14 0 chr3 150716188 150716556 -76808022 + THE1C LTR MaLR 3 375 0 8920 118 68 43 chr3 150716556 150718097 -76806481 + THE1C-int LTR MaLR 1 1580 0 2973 99 8 0 chr3 150718097 150718469 -76806109 + THE1C LTR MaLR 1 375 0 1004 224 63 94 chr3 150719209 150719668 -76804910 + L1M4 LINE L1 4103 4547 -1599 315 217 341 36 chr3 150719813 150719951 -76804627 + MER5A DNA MER1_type 4 183 -6 756 156 74 0 chr3 150720439 150720561 -76804017 - FLAM_C SINE Alu -1 132 2 219 103 0 0 chr3 150720599 150720638 -76803940 + (CA)n Simple_repeat Simple_repeat 1 39 0 836 164 33 28 chr3 150720826 150721006 -76803572 + MER33 DNA MER1_type 1 173 -101 394 229 78 0 chr3 150721273 150721370 -76803208 - MIR SINE MIR -58 150 46 1083 231 14 0 chr3 150722602 150722810 -76801768 - MER20 DNA MER1_type -1 218 8 267 221 9 129 chr3 150722930 150723161 -76801417 - L1ME3A LINE L1 -2 6168 5964 2040 257 115 30 chr3 150723187 150723986 -76800592 + HAL1 LINE L1 1640 2506 -1 1230 162 29 0 chr3 150724339 150724543 -76800035 - MER2 DNA MER2_type -134 211 2 387 347 26 11 chr3 150724791 150725004 -76799574 + MIR SINE MIR 3 218 -44 222 156 0 0 chr3 150725034 150725079 -76799499 + (TTA)n Simple_repeat Simple_repeat 1 45 0 988 185 27 45 chr3 150725201 150725423 -76799155 - AluJb SINE Alu -3 309 92 250 114 0 0 chr3 150725427 150725462 -76799116 + AluJ/FLAM SINE Alu 35 69 -233 186 43 0 0 chr3 150725604 150725627 -76798951 + (CAA)n Simple_repeat Simple_repeat 2 24 0 21 0 0 0 chr3 150726534 150726555 -76798023 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 150726714 150726743 -76797835 + AT_rich Low_complexity Low_complexity 1 29 0 533 15 0 15 chr3 150727141 150727208 -76797370 + (GGAA)n Simple_repeat Simple_repeat 1 66 0 306 312 0 28 chr3 150729551 150729660 -76794918 + MIR3 SINE MIR 57 162 -46 1183 119 15 8 chr3 150729996 150730184 -76794394 - MSTD LTR MaLR -237 159 1 180 343 167 0 chr3 150730763 150730865 -76793713 - L2 LINE L2 0 3313 3195 239 353 83 32 chr3 150731053 150731305 -76793273 - L2 LINE L2 -168 3145 2881 956 201 128 47 chr3 150731306 150731649 -76792929 + L1ME2 LINE L1 5613 5983 -181 672 113 38 0 chr3 150731787 150731893 -76792685 + AluSq/x SINE Alu 2 111 -201 208 239 43 0 chr3 150732424 150732470 -76792108 - MIR SINE MIR -15 247 200 * 389 349 150 19 chr3 150732467 150732579 -76791999 - L2 LINE L2 -3 3310 3214 191 61 30 0 chr3 150732579 150732612 -76791966 + (TAAA)n Simple_repeat Simple_repeat 3 36 0 389 349 150 19 chr3 150732612 150732872 -76791706 - L2 LINE L2 -99 3214 2889 400 236 0 22 chr3 150732880 150732969 -76791609 + AluJ/FRAM SINE Alu 221 307 -5 423 246 16 32 chr3 150732976 150733102 -76791476 - MIR SINE MIR -58 204 81 740 70 0 39 chr3 150733613 150733742 -76790836 + (GAAA)n Simple_repeat Simple_repeat 4 127 0 186 43 0 0 chr3 150734799 150734822 -76789756 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 710 217 151 0 chr3 150735007 150735159 -76789419 + MER5A DNA MER1_type 9 183 -6 265 261 0 76 chr3 150736437 150736529 -76788049 + MIR SINE MIR 29 113 -149 217 328 0 0 chr3 150736939 150737003 -76787575 + (CA)n Simple_repeat Simple_repeat 1 64 0 186 341 67 59 chr3 150737181 150737260 -76787318 - L2 LINE L2 0 3272 3190 964 227 116 14 chr3 150737260 150737476 -76787102 + MER8 DNA MER2_type 2 239 0 186 341 67 59 chr3 150737476 150737531 -76787047 - L2 LINE L2 -82 3190 3137 302 273 36 9 chr3 150737559 150737669 -76786909 + MIR SINE MIR 74 186 -76 289 180 49 0 chr3 150737920 150737981 -76786597 + MIR SINE MIR 120 183 -79 188 370 135 16 chr3 150738974 150739166 -76785412 + MIR SINE MIR 23 237 -25 327 292 0 0 chr3 150739179 150739251 -76785327 - MER91B DNA MER1_type -117 73 2 479 205 54 9 chr3 150739613 150739725 -76784853 + L2 LINE L2 3196 3312 -1 396 272 151 10 chr3 150739974 150740180 -76784398 - MIR SINE MIR 0 262 28 926 203 28 55 chr3 150741379 150741596 -76782982 + MER20 DNA MER1_type 9 219 0 333 330 44 22 chr3 150741739 150741921 -76782657 + MIR SINE MIR 48 233 -29 231 329 89 0 chr3 150742632 150742711 -76781867 - MIR3 SINE MIR -22 186 101 292 333 41 0 chr3 150742712 150742835 -76781743 - MER91A DNA MER1_type -1 195 68 359 325 8 0 chr3 150743620 150743746 -76780832 - MER58B DNA MER1_type -4 337 211 1013 141 0 0 chr3 150743905 150744047 -76780531 - AluSq/x SINE Alu -170 142 1 2305 108 0 0 chr3 150744519 150744825 -76779753 + AluSx SINE Alu 1 306 -6 794 279 19 34 chr3 150745234 150745499 -76779079 - MIR SINE MIR 0 262 2 245 366 10 10 chr3 150746803 150746904 -76777674 + MIR3 SINE MIR 97 197 -11 180 77 0 0 chr3 150747083 150747109 -76777469 + (CA)n Simple_repeat Simple_repeat 2 27 0 186 200 100 0 chr3 150747670 150747710 -76776868 + L3 LINE CR1 1526 1569 -8 301 241 6 29 chr3 150748854 150749024 -76775554 + GA-rich Low_complexity Low_complexity 2 167 0 182 263 66 13 chr3 150752751 150752827 -76771751 - MIR3 SINE MIR -14 194 115 640 301 92 5 chr3 150753043 150753249 -76771329 - MER58A DNA MER1_type 0 224 1 26 0 0 0 chr3 150754147 150754173 -76770405 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr3 150755001 150755031 -76769547 + AT_rich Low_complexity Low_complexity 1 30 0 2800 19 0 0 chr3 150755059 150755366 -76769212 - AluYa5 SINE Alu -4 307 1 558 144 14 123 chr3 150755578 150755662 -76768916 + Charlie1 DNA MER1_type 2628 2691 -70 2219 119 0 3 chr3 150755662 150755964 -76768614 - AluSx SINE Alu -11 301 1 558 144 14 123 chr3 150755964 150756025 -76768553 + Charlie1 DNA MER1_type 2691 2757 -4 204 291 23 44 chr3 150756049 150756154 -76768424 + MIR SINE MIR 30 130 -78 387 353 26 32 chr3 150756174 150756330 -76768248 + L2 LINE L2 3116 3270 -2 210 298 0 96 chr3 150756329 150756423 -76768155 + MIR SINE MIR 166 250 -12 * 877 205 5 51 chr3 150756516 150756711 -76767867 + MER5A DNA MER1_type 1 186 -3 251 315 240 7 chr3 150757282 150757428 -76767150 - MIR SINE MIR -77 185 6 22 35 0 0 chr3 150757675 150757704 -76766874 + AT_rich Low_complexity Low_complexity 1 29 0 35 0 0 0 chr3 150758209 150758244 -76766334 + AT_rich Low_complexity Low_complexity 1 35 0 410 274 57 16 chr3 150758432 150758556 -76766022 - MIR SINE MIR -115 147 19 345 259 129 0 chr3 150758661 150758777 -76765801 - L2 LINE L2 -1 3312 3182 462 302 57 31 chr3 150758791 150758983 -76765595 + MIR3 SINE MIR 9 205 -3 191 219 0 0 chr3 150760003 150760035 -76764543 + L2 LINE L2 3203 3234 -38 1017 171 78 21 chr3 150760282 150760525 -76764053 + MER33 DNA MER1_type 1 249 -75 343 242 61 40 chr3 150761847 150761946 -76762632 + MIR3 SINE MIR 87 187 -21 191 222 0 0 chr3 150761915 150761951 -76762627 + L3 LINE CR1 1530 1565 -12 * 186 71 0 0 chr3 150764968 150764996 -76759582 + (TG)n Simple_repeat Simple_repeat 2 29 0 226 371 0 0 chr3 150765595 150765692 -76758886 + C-rich Low_complexity Low_complexity 4 100 0 193 93 0 47 chr3 150767054 150767097 -76757481 + (GGGA)n Simple_repeat Simple_repeat 3 43 0 182 366 0 0 chr3 150767539 150767610 -76756968 + L2 LINE L2 3187 3257 -15 535 272 23 102 chr3 150768357 150768662 -76755916 - MLT1K LTR MaLR -294 294 14 375 254 25 68 chr3 150768806 150768924 -76755654 + L2 LINE L2 3162 3274 -39 27 0 0 0 chr3 150768931 150768958 -76755620 + AT_rich Low_complexity Low_complexity 1 27 0 185 333 0 0 chr3 150768958 150769006 -76755572 - MIR3 SINE MIR -36 172 125 359 353 69 10 chr3 150769010 150769214 -76755364 - MIR SINE MIR -6 256 41 180 152 0 0 chr3 150770139 150770172 -76754406 + T-rich Low_complexity Low_complexity 1 33 0 234 254 15 45 chr3 150770766 150770833 -76753745 + MIR3 SINE MIR 110 174 -34 379 290 104 97 chr3 150771052 150771107 -76753471 + MLT1J LTR MaLR 105 158 -353 994 220 0 0 chr3 150771107 150771316 -76753262 - MER3 DNA MER1_type 0 209 1 379 290 104 97 chr3 150771316 150771664 -76752914 + MLT1J LTR MaLR 158 511 0 484 305 71 10 chr3 150771960 150772157 -76752421 - MIR SINE MIR -18 244 36 391 274 11 0 chr3 150772925 150773020 -76751558 - MLT1H1 LTR MaLR -457 98 3 1143 171 46 125 chr3 150773480 150773825 -76750753 - MLT1A1 LTR MaLR -2 363 46 222 370 64 56 chr3 150773963 150774384 -76750194 - L2 LINE L2 -75 3197 2768 482 265 33 143 chr3 150774812 150775204 -76749374 - L2 LINE L2 -44 3269 2921 309 328 40 40 chr3 150776195 150776369 -76748209 - L1MC4a LINE L1 -1938 5870 5697 2015 126 7 0 chr3 150776451 150776728 -76747850 + AluSx SINE Alu 1 279 -33 371 130 0 14 chr3 150776741 150776810 -76747768 + (GGGAA)n Simple_repeat Simple_repeat 2 69 0 1727 199 8 8 chr3 150777186 150777578 -76747000 + L1MD3 LINE L1 7590 7981 -14 2563 53 0 0 chr3 150777934 150778238 -76746340 + AluY SINE Alu 1 304 -7 1396 242 124 23 chr3 150778809 150779293 -76745285 + MLT1H LTR MaLR 17 549 0 411 250 26 26 chr3 150779293 150779409 -76745169 - MIR SINE MIR -102 160 45 394 339 16 42 chr3 150780041 150780233 -76744345 + L2 LINE L2 2708 2894 -420 806 197 6 17 chr3 150780242 150780420 -76744158 - FRAM SINE Alu -1 175 1 213 39 0 0 chr3 150780512 150780538 -76744040 + (CA)n Simple_repeat Simple_repeat 1 26 0 35930 44 5 1 chr3 150780622 150786065 -76738513 - L1PA5 LINE L1 -1 6153 690 349 281 10 21 chr3 150786167 150786263 -76738315 + L2 LINE L2 3219 3313 0 1496 200 37 59 chr3 150787240 150787645 -76736933 + MSTD LTR MaLR 1 396 0 5507 44 0 0 chr3 150788242 150788901 -76735677 - L1PA5 LINE L1 -3 6151 5493 356 337 112 39 chr3 150789303 150789715 -76734863 - L2 LINE L2 -2 3270 2829 571 313 94 0 chr3 150789804 150790005 -76734573 - L2 LINE L2 -560 2754 2535 795 311 38 14 chr3 150790235 150790582 -76733996 + LTR16C LTR ERVL 134 488 -3 1658 154 42 88 chr3 150791174 150791582 -76732996 - MLT1B LTR MaLR 0 390 2 5980 133 17 9 chr3 150791816 150793718 -76730860 - L1PA14 LINE L1 0 6161 4246 189 0 0 0 chr3 150793783 150793804 -76730774 + (A)n Simple_repeat Simple_repeat 1 21 0 1652 149 7 0 chr3 150793932 150794214 -76730364 - L1PA14 LINE L1 -1905 4241 3958 353 267 60 9 chr3 150795287 150795403 -76729175 - MIR SINE MIR -59 203 82 187 148 0 0 chr3 150796557 150796584 -76727994 + L3 LINE CR1 437 463 -1114 880 259 68 34 chr3 150797168 150797697 -76726881 + HAL1b LINE L1 67 613 -735 217 304 40 88 chr3 150799479 150799712 -76724866 + MIR3 SINE MIR 8 225 -37 2071 168 5 16 chr3 150799919 150800288 -76724290 - MLT1A1 LTR MaLR 0 365 1 342 282 39 0 chr3 150800520 150800623 -76723955 - MER94 DNA DNA -21 113 7 377 271 99 33 chr3 150800798 150800949 -76723629 - MER117 DNA MER1_type -34 163 3 220 350 10 21 chr3 150801414 150801511 -76723067 - MER91A DNA MER1_type -100 96 1 2430 148 140 36 chr3 150801676 150802274 -76722304 + MER39 LTR ERV1 1 707 0 423 0 0 0 chr3 150802413 150802460 -76722118 + (CA)n Simple_repeat Simple_repeat 2 48 0 275 252 37 93 chr3 150804152 150804259 -76720319 - MIR SINE MIR -23 239 139 277 252 176 8 chr3 150804391 150804510 -76720068 - MIR SINE MIR -3 259 121 3309 58 2 0 chr3 150804553 150804970 -76719608 + L1PA5 LINE L1 5736 6153 -1 258 311 0 0 chr3 150805683 150805757 -76718821 + (TATG)n Simple_repeat Simple_repeat 2 75 0 276 314 89 8 chr3 150805984 150806108 -76718470 - MIR SINE MIR -50 212 79 237 308 0 31 chr3 150807772 150807837 -76716741 - MIR SINE MIR -179 83 21 4616 142 30 1 chr3 150808617 150809405 -76715173 - L1PA16 LINE L1 -9 6157 5347 251 313 56 30 chr3 150810550 150810748 -76713830 + L1ME4a LINE L1 5481 5683 -438 391 217 89 35 chr3 150810774 150810977 -76713601 + L1ME4a LINE L1 5733 5946 -175 194 280 0 0 chr3 150811370 150811420 -76713158 + L2 LINE L2 3264 3313 0 2036 157 30 34 chr3 150812156 150812717 -76711861 + MLT2A2 LTR ERVL 1 554 0 2437 48 3 0 chr3 150812847 150813136 -76711442 - AluY SINE Alu -21 290 1 1983 142 0 39 chr3 150813300 150813610 -76710968 - AluSx SINE Alu -14 298 1 4210 288 86 19 chr3 150813796 150815705 -76708873 + L2 LINE L2 1273 3308 -5 260 227 0 30 chr3 150815706 150815772 -76708806 + GA-rich Low_complexity Low_complexity 1 64 0 408 252 36 0 chr3 150815799 150815910 -76708668 + MIR3 SINE MIR 91 205 -3 212 352 46 19 chr3 150817032 150817140 -76707438 + L2 LINE L2 2949 3059 -213 21 36 0 0 chr3 150817298 150817326 -76707252 + AT_rich Low_complexity Low_complexity 1 28 0 285 250 86 20 chr3 150868220 150868372 -76656206 - L1MEd LINE L1 -5954 165 4 1982 80 0 8 chr3 150868434 150868736 -76655842 - AluSg SINE Alu 0 334 35 249 288 65 13 chr3 150868756 150868909 -76655669 - L1ME4a LINE L1 -1 6120 5960 249 57 0 0 chr3 150868946 150868981 -76655597 + (T)n Simple_repeat Simple_repeat 1 35 0 330 106 213 0 chr3 150869704 150869845 -76654733 - L1PA3 LINE L1 -8 6147 5977 1371 166 59 24 chr3 150870059 150870348 -76654230 + AluY SINE Alu 1 299 -2 1424 159 58 24 chr3 150870064 150870359 -76654219 + AluY SINE Alu 6 310 -1 4206 69 10 0 chr3 150870360 150871181 -76653397 + L1PA11 LINE L1 5002 5828 -346 31 0 0 0 chr3 150871297 150871328 -76653250 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr3 150871366 150871389 -76653189 + AT_rich Low_complexity Low_complexity 1 23 0 30 0 0 0 chr3 150871403 150871433 -76653145 + AT_rich Low_complexity Low_complexity 1 30 0 56 71 0 0 chr3 150873130 150873242 -76651336 + GC_rich Low_complexity Low_complexity 1 112 0 294 303 91 18 chr3 150873860 150874025 -76650553 - MIR SINE MIR -10 252 76 1176 191 136 30 chr3 150874321 150874651 -76649927 - MLT1A1 LTR MaLR 0 365 1 261 295 0 0 chr3 150877351 150877429 -76647149 - MER91B DNA MER1_type -9 181 104 401 279 0 58 chr3 150877716 150877959 -76646619 + C-rich Low_complexity Low_complexity 1 228 0 1112 274 72 25 chr3 150878530 150878935 -76645643 - LTR16A LTR ERVL -6 444 21 530 243 227 16 chr3 150878957 150879142 -76645436 + MER58A DNA MER1_type 1 224 0 6476 83 12 7 chr3 150879778 150880702 -76643876 + L1PA7 LINE L1 5224 6154 0 229 140 0 20 chr3 150881432 150881482 -76643096 + LTR5 LTR ERVK 751 799 -170 4029 106 1 60 chr3 150881510 150881596 -76642982 - L1M1 LINE L1 -4638 2927 2838 1978 135 7 0 chr3 150881596 150881924 -76642654 - AluSx SINE Alu 0 330 1 4029 106 1 60 chr3 150881924 150882038 -76642540 - L1M1 LINE L1 -4727 2838 2719 1827 133 4 0 chr3 150882038 150882301 -76642277 - AluSx SINE Alu -13 299 36 4029 106 1 60 chr3 150882301 150882780 -76641798 - L1M1 LINE L1 -4846 2719 2286 292 211 0 0 chr3 150882880 150882937 -76641641 - MER5A DNA MER1_type -124 65 9 382 329 145 0 chr3 150883252 150883459 -76641119 + MIR SINE MIR 26 262 0 450 278 106 7 chr3 150883631 150883782 -76640796 + MIR3 SINE MIR 42 207 -1 322 149 14 40 chr3 150884828 150884902 -76639676 - MLT1J LTR MaLR -1 589 518 7241 51 2 0 chr3 150885081 150885963 -76638615 - L1PA3 LINE L1 -1 6154 5271 837 266 104 47 chr3 150886426 150886790 -76637788 - MLT1J LTR MaLR -123 388 4 297 217 73 42 chr3 150886816 150886921 -76637657 - MIR SINE MIR -98 110 4 366 323 30 23 chr3 150887211 150887393 -76637185 + MIR3 SINE MIR 2 187 -21 227 323 69 15 chr3 150887697 150887827 -76636751 + L2 LINE L2 3161 3297 -16 736 230 58 0 chr3 150888039 150888213 -76636365 + MER3 DNA MER1_type 1 184 -25 720 222 60 6 chr3 150888355 150888522 -76636056 - MER97a DNA MER1_type? -717 177 2 2144 102 31 7 chr3 150888847 150889140 -76635438 + AluSg SINE Alu 1 300 -10 5171 109 18 3 chr3 150891214 150892017 -76632561 - L1PA12 LINE L1 -157 6011 5199 499 261 28 11 chr3 150892096 150892272 -76632306 + L1MC5 LINE L1 6961 7139 -822 238 200 77 0 chr3 150892312 150892377 -76632201 + L1MA10 LINE L1 6241 6310 -24 374 342 80 5 chr3 150892545 150892744 -76631834 - L2 LINE L2 -188 3084 2871 1365 220 40 3 chr3 150892834 150893212 -76631366 + L1MB7 LINE L1 5615 6006 -178 396 258 172 20 chr3 150894393 150894544 -76630034 + MER5A DNA MER1_type 9 182 -7 271 231 145 8 chr3 150895090 150895207 -76629371 + MIR SINE MIR 129 261 -1 631 278 46 0 chr3 150895396 150895547 -76629031 - L2 LINE L2 0 3272 3115 1606 138 28 21 chr3 150895598 150895881 -76628697 - AluJo SINE Alu -15 297 13 2094 129 60 6 chr3 150896039 150896371 -76628207 - MLT1B LTR MaLR -40 350 1 21 36 0 0 chr3 150897033 150897061 -76627517 + GC_rich Low_complexity Low_complexity 1 28 0 59 53 0 0 chr3 150897132 150897226 -76627352 + GC_rich Low_complexity Low_complexity 1 94 0 246 221 29 29 chr3 150897309 150897445 -76627133 + (CGG)n Simple_repeat Simple_repeat 3 138 0 47 19 0 0 chr3 150897913 150897967 -76626611 + GC_rich Low_complexity Low_complexity 1 54 0 49 95 0 6 chr3 150898146 150898294 -76626284 + GC_rich Low_complexity Low_complexity 1 149 -29 230 54 0 27 chr3 150898294 150898331 -76626247 + (CGGGGG)n Simple_repeat Simple_repeat 6 41 0 49 95 0 6 chr3 150898331 150898361 -76626217 + GC_rich Low_complexity Low_complexity 149 178 0 4014 220 28 3 chr3 150899618 150900804 -76623774 - L1PA13 LINE L1 -4206 2591 1371 298 315 15 8 chr3 150900949 150901079 -76623499 - L1PA13 LINE L1 -6176 611 481 332 278 0 11 chr3 150901487 150901577 -76623001 - MIR SINE MIR -117 145 57 * 398 202 83 0 chr3 150901576 150901660 -76622918 + MER5A DNA MER1_type 59 149 -40 2019 149 0 0 chr3 150901674 150901956 -76622622 - AluSx SINE Alu -30 282 1 222 250 19 0 chr3 150901960 150902012 -76622566 + MER5A DNA MER1_type 136 188 -1 1444 118 37 8 chr3 150902098 150902343 -76622235 + L1MA9 LINE L1 6061 6312 0 273 279 0 51 chr3 150902557 150902636 -76621942 - MIR SINE MIR -87 121 47 251 139 0 0 chr3 150904019 150904055 -76620523 + MADE1 DNA Mariner 4 39 -41 6412 94 14 0 chr3 150904055 150905510 -76619068 - L1PA8A LINE L1 -1 6130 4667 9302 118 1 0 chr3 150905510 150906865 -76617713 + L1P LINE L1 3262 4617 -1529 568 288 84 78 chr3 150907644 150908144 -76616434 + MLT1J LTR MaLR 7 509 -2 180 0 0 0 chr3 150908431 150908451 -76616127 + (TCC)n Simple_repeat Simple_repeat 2 21 0 268 224 30 0 chr3 150909021 150909088 -76615490 + LTR33 LTR ERVL 399 467 -54 437 250 81 0 chr3 150909144 150909304 -76615274 - MER114 LTR ERV 0 648 476 23 0 0 0 chr3 150909305 150909328 -76615250 + AT_rich Low_complexity Low_complexity 1 23 0 386 209 22 0 chr3 150909509 150909600 -76614978 + L1M4 LINE L1 2377 2469 -3677 22 0 0 0 chr3 150909649 150909671 -76614907 + AT_rich Low_complexity Low_complexity 1 22 0 527 218 23 0 chr3 150909671 150909804 -76614774 + L1M4 LINE L1 2473 2608 -3538 675 272 61 4 chr3 150910093 150910321 -76614257 + L1ME3A LINE L1 5916 6156 -14 7853 28 0 0 chr3 150910514 150911739 -76612839 + L1PA3 LINE L1 4929 6155 0 423 297 28 64 chr3 150911814 150912063 -76612515 + MLT1H LTR MaLR 23 262 -287 270 217 43 33 chr3 150912169 150912261 -76612317 + MLT1H LTR MaLR 450 542 0 1478 201 84 31 chr3 150912393 150912841 -76611737 + MLT2B2 LTR ERVL 3 514 -1 583 295 35 10 chr3 150913758 150913958 -76610620 - MIR SINE MIR -10 252 48 221 227 47 0 chr3 150914616 150914688 -76609890 - MIR SINE MIR -94 114 40 718 316 67 26 chr3 150915400 150915960 -76608618 + L1ME3A LINE L1 5314 5890 -280 374 337 38 19 chr3 150917102 150917366 -76607212 + L1ME3A LINE L1 5622 5890 -280 321 262 16 16 chr3 150919751 150919877 -76604701 + L1MB7 LINE L1 6044 6169 -15 27 0 0 0 chr3 150919895 150919922 -76604656 + AT_rich Low_complexity Low_complexity 1 27 0 304 280 38 36 chr3 150920001 150920200 -76604378 + MIR SINE MIR 60 256 -6 499 259 213 0 chr3 150921188 150921470 -76603108 + L1ME4a LINE L1 5575 5916 -205 43050 37 22 4 chr3 150921485 150926329 -76598249 + L1PA3 LINE L1 42 5023 -1132 2850 6 0 19 chr3 150926329 150926646 -76597932 + AluYa5 SINE Alu 1 311 0 43050 37 22 4 chr3 150926646 150927798 -76596780 + L1PA3 LINE L1 5023 6152 -3 22 35 0 0 chr3 150927910 150927939 -76596639 + AT_rich Low_complexity Low_complexity 1 29 0 249 57 0 0 chr3 150928532 150928567 -76596011 + (A)n Simple_repeat Simple_repeat 1 35 0 283 268 72 20 chr3 150928604 150928757 -76595821 + L1ME4a LINE L1 5960 6120 -1 1852 102 0 28 chr3 150928776 150929052 -76595526 + AluSc SINE Alu 34 302 0 2093 110 3 7 chr3 150929053 150929371 -76595207 + AluSg SINE Alu 1 317 0 400 295 110 49 chr3 150929754 150929833 -76594745 - L2 LINE L2 -111 3202 3129 1172 164 27 53 chr3 150929833 150930058 -76594520 - MER20 DNA MER1_type 0 219 1 400 295 110 49 chr3 150930058 150930324 -76594254 - L2 LINE L2 -184 3129 2836 1273 226 41 78 chr3 150930485 150930945 -76593633 + MLT1J1 LTR MaLR 2 444 -2 189 107 0 0 chr3 150931723 150931751 -76592827 + (TATATG)n Simple_repeat Simple_repeat 3 30 0 401 208 59 20 chr3 150931768 150931869 -76592709 + MER112 DNA MER1_type 77 181 -79 2745 198 108 19 chr3 150931878 150932630 -76591948 + L1ME2 LINE L1 5301 6119 -45 435 295 36 14 chr3 150933956 150934095 -76590483 + MIR SINE MIR 70 211 -51 371 209 76 29 chr3 150934195 150934300 -76590278 - L2 LINE L2 -1 3312 3203 1285 251 27 33 chr3 150934408 150934742 -76589836 + LTR16A LTR ERVL 97 428 -22 2176 153 11 27 chr3 150934742 150935108 -76589470 + MLT2D LTR ERVL 1 360 -54 279 113 0 0 chr3 150935129 150935182 -76589396 + (TC)n Simple_repeat Simple_repeat 1 53 0 351 0 0 0 chr3 150935182 150935221 -76589357 + (TG)n Simple_repeat Simple_repeat 2 40 0 1311 240 88 0 chr3 150935337 150935620 -76588958 + MER45B DNA AcHobo 1 308 -732 263 276 0 0 chr3 150935617 150935675 -76588903 + MER45B DNA AcHobo 251 308 -732 * 3630 179 34 43 chr3 150935672 150936038 -76588540 + MER45B DNA AcHobo 251 619 -962 3694 61 5 2 chr3 150936038 150936483 -76588095 + L1PA7 LINE L1 5706 6151 -3 3630 179 34 43 chr3 150936483 150936913 -76587665 + MER45B DNA AcHobo 619 1040 0 3064 211 43 34 chr3 150937317 150937991 -76586587 + L1ME1 LINE L1 4865 5526 -652 2217 102 10 0 chr3 150937991 150938285 -76586293 - AluSq SINE Alu -16 297 1 3064 211 43 34 chr3 150938285 150938943 -76585635 + L1ME1 LINE L1 5526 6177 -1 425 271 33 55 chr3 150939409 150939590 -76584988 + MIR3 SINE MIR 1 177 -31 222 37 0 0 chr3 150940024 150940051 -76584527 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 267 31 0 0 chr3 150940050 150940082 -76584496 + (CA)n Simple_repeat Simple_repeat 1 32 0 228 318 15 15 chr3 150940474 150940540 -76584038 - MIR SINE MIR -124 84 19 1305 253 140 4 chr3 150940684 150941165 -76583413 + MLT1G3 LTR MaLR 5 498 -32 745 61 0 0 chr3 150941165 150941263 -76583315 - L1PA4 LINE L1 -66 6089 5992 395 20 0 0 chr3 150941267 150941316 -76583262 + L1PA2 LINE L1 6104 6152 -3 328 149 14 40 chr3 150941497 150941571 -76583007 + MLT1G3 LTR MaLR 518 589 -1 1293 188 136 30 chr3 150942194 150942524 -76582054 + MLT1A1 LTR MaLR 1 365 0 181 407 44 0 chr3 150942613 150942704 -76581874 - L2 LINE L2 -25 3247 3153 337 321 79 6 chr3 150942820 150942985 -76581593 + MIR SINE MIR 76 252 -10 189 255 64 0 chr3 150943181 150943228 -76581350 - MIR3 SINE MIR -36 172 123 1634 220 153 59 chr3 150943557 150944047 -76580531 + MLT1H LTR MaLR 14 549 0 264 271 105 15 chr3 150944683 150944816 -76579762 + MLT1K LTR MaLR 432 576 -12 273 359 95 29 chr3 150944911 150945259 -76579319 + LTR16A LTR ERVL 1 371 -79 189 0 0 0 chr3 150945717 150945738 -76578840 + (T)n Simple_repeat Simple_repeat 1 21 0 390 264 343 14 chr3 150946147 150946514 -76578064 + MLT1H LTR MaLR 99 587 -8 613 317 61 7 chr3 150946551 150946931 -76577647 + L1MC4a LINE L1 5500 5715 -406 263 301 0 14 chr3 150947030 150947103 -76577475 - MLT1I LTR MaLR -8 401 330 323 259 0 24 chr3 150947503 150947588 -76576990 - MLT1I LTR MaLR -228 181 99 325 231 103 92 chr3 150947721 150947916 -76576662 - MIR SINE MIR -46 216 20 373 338 83 23 chr3 150948078 150948211 -76576367 + L2 LINE L2 3123 3263 -9 588 29 0 0 chr3 150948212 150948282 -76576296 + (TGGA)n Simple_repeat Simple_repeat 2 71 0 621 203 169 0 chr3 150948352 150948500 -76576078 + MER5A DNA MER1_type 9 181 -8 280 290 107 8 chr3 150949012 150949143 -76575435 - MIR SINE MIR -56 206 63 253 368 97 9 chr3 150949733 150949847 -76574731 - MIR SINE MIR -65 143 20 1808 301 86 23 chr3 150949888 150950864 -76573714 + L2 LINE L2 2144 3190 -123 794 229 213 0 chr3 150950930 150951113 -76573465 - MER58A DNA MER1_type -1 223 2 305 196 0 0 chr3 150951434 150951490 -76573088 - L1PA13 LINE L1 -5361 1426 1371 289 315 15 8 chr3 150951635 150951765 -76572813 - L1PA13 LINE L1 -6176 611 481 356 267 0 11 chr3 150952174 150952264 -76572314 - MIR SINE MIR -117 145 57 * 430 202 83 0 chr3 150952263 150952347 -76572231 + MER5A DNA MER1_type 59 149 -40 2036 136 0 0 chr3 150952363 150952643 -76571935 - AluSx SINE Alu -32 280 1 3127 156 7 24 chr3 150952644 150953195 -76571383 - MST-int LTR MaLR -1108 543 2 2578 105 11 11 chr3 150953200 150953552 -76571026 - THE1A LTR MaLR -3 352 1 2211 258 82 2 chr3 150955037 150955583 -76568995 - MLT1G1 LTR MaLR -5 590 1 195 42 0 0 chr3 150955619 150955643 -76568935 + (TG)n Simple_repeat Simple_repeat 1 24 0 15324 44 10 3 chr3 150956230 150958148 -76566430 + L1P LINE L1 3119 5049 -1097 6815 83 4 16 chr3 150958311 150959854 -76564724 + L1PA7 LINE L1 4613 6148 -6 6742 152 29 30 chr3 150959854 150961112 -76563466 - Tigger1 DNA MER2_type -1158 1260 4 255 320 29 10 chr3 150961404 150961507 -76563071 - MIR SINE MIR -1 261 157 2037 177 98 38 chr3 150961510 150961961 -76562617 + MLT2B1 LTR ERVL 1 478 -42 400 198 11 29 chr3 150961983 150962259 -76562319 + (TA)n Simple_repeat Simple_repeat 1 270 0 1556 106 0 9 chr3 150962498 150962716 -76561862 + AluSq SINE Alu 84 299 -14 373 196 33 43 chr3 150962890 150962982 -76561596 - MLT1H LTR MaLR -2 547 457 245 238 98 116 chr3 150963089 150963253 -76561325 - MLT1H LTR MaLR -251 298 138 240 267 27 104 chr3 150963409 150963630 -76560948 - L1ME LINE L1 -230 5891 5687 384 22 0 0 chr3 150963641 150963686 -76560892 + (TG)n Simple_repeat Simple_repeat 1 45 0 355 98 20 0 chr3 150963727 150963778 -76560800 - MER20 DNA MER1_type -47 172 121 1131 145 146 5 chr3 150963779 150964184 -76560394 + L1P5 LINE L1 5201 5660 -491 300 328 157 0 chr3 150965388 150965522 -76559056 - MIR3 SINE MIR -18 190 36 263 235 59 24 chr3 150966241 150966326 -76558252 + MIR3 SINE MIR 113 200 -8 2127 112 0 7 chr3 150966369 150966675 -76557903 + AluY SINE Alu 1 311 0 1859 176 46 65 chr3 150967788 150967873 -76556705 + Charlie1 DNA MER1_type 2250 2335 -426 1085 79 0 7 chr3 150967873 150968013 -76556565 - MER85 DNA T2_type 0 139 1 1859 176 46 65 chr3 150968013 150968286 -76556292 + Charlie1 DNA MER1_type 2335 2597 -164 2113 114 7 16 chr3 150968286 150968593 -76555985 - AluSx SINE Alu -8 304 1 1859 176 46 65 chr3 150968593 150968755 -76555823 + Charlie1 DNA MER1_type 2597 2761 0 228 81 0 0 chr3 150969028 150969065 -76555513 + L1MA8 LINE L1 6251 6287 -4 2214 120 0 0 chr3 150969161 150969470 -76555108 + AluSx SINE Alu 3 311 -1 536 278 47 11 chr3 150969526 150969717 -76554861 + MIR SINE MIR 65 262 0 355 203 0 0 chr3 150970653 150970717 -76553861 + MLT1L LTR MaLR 548 611 -4 414 186 93 12 chr3 150970726 150970812 -76553766 + L2 LINE L2 3180 3272 0 1138 265 124 33 chr3 150971712 150972195 -76552383 - MLT1G LTR MaLR -63 527 1 1598 266 53 11 chr3 150972222 150972770 -76551808 + L2 LINE L2 2507 3078 -235 1015 174 49 72 chr3 150973556 150973861 -76550717 - AluJo SINE Alu -3 299 2 184 293 98 0 chr3 150974239 150974321 -76550257 - L2 LINE L2 -4 3268 3179 1442 180 337 14 chr3 150974483 150975056 -76549522 + LTR50 LTR ERVL 1 758 -37 425 200 73 12 chr3 150975056 150975243 -76549335 + L1M3 LINE L1 5495 5693 -487 384 228 8 41 chr3 150975491 150975614 -76548964 + MLT1J2 LTR MaLR 330 448 -2 368 219 59 34 chr3 150976420 150976539 -76548039 + MER112 DNA MER1_type 60 181 -79 2417 202 107 17 chr3 150976548 150977294 -76547284 + L1ME2 LINE L1 5301 6113 -51 442 295 36 14 chr3 150978627 150978766 -76545812 + MIR SINE MIR 70 211 -51 378 209 76 29 chr3 150978866 150978971 -76545607 - L2 LINE L2 -1 3312 3203 1158 254 27 33 chr3 150979079 150979413 -76545165 + LTR16A LTR ERVL 97 428 -22 2010 153 11 27 chr3 150979413 150979779 -76544799 + MLT2D LTR ERVL 1 360 -54 279 113 0 0 chr3 150979800 150979853 -76544725 + (TC)n Simple_repeat Simple_repeat 1 53 0 351 0 0 0 chr3 150979853 150979892 -76544686 + (TG)n Simple_repeat Simple_repeat 2 40 0 1207 247 88 0 chr3 150980008 150980291 -76544287 + MER45B DNA AcHobo 1 308 -732 243 276 0 0 chr3 150980288 150980346 -76544232 + MER45B DNA AcHobo 251 308 -732 * 3285 182 33 41 chr3 150980343 150980709 -76543869 + MER45B DNA AcHobo 251 619 -962 3459 61 5 2 chr3 150980709 150981154 -76543424 + L1PA7 LINE L1 5706 6151 -3 3285 182 33 41 chr3 150981154 150981584 -76542994 + MER45B DNA AcHobo 619 1040 0 2754 211 43 34 chr3 150981988 150982662 -76541916 + L1ME1 LINE L1 4865 5526 -652 2214 102 10 0 chr3 150982662 150982956 -76541622 - AluSq SINE Alu -16 297 1 2754 211 43 34 chr3 150982956 150983614 -76540964 + L1ME1 LINE L1 5526 6177 -1 423 271 33 55 chr3 150984080 150984261 -76540317 + MIR3 SINE MIR 1 177 -31 222 37 0 0 chr3 150984694 150984721 -76539857 + (TC)n Simple_repeat Simple_repeat 1 27 0 * 267 31 0 0 chr3 150984720 150984752 -76539826 + (CA)n Simple_repeat Simple_repeat 1 32 0 224 318 15 15 chr3 150985144 150985210 -76539368 - MIR SINE MIR -124 84 19 1143 253 141 4 chr3 150985354 150985832 -76538746 + MLT1G3 LTR MaLR 5 495 -35 741 58 0 0 chr3 150985832 150985935 -76538643 - L1PA4 LINE L1 -63 6092 5990 368 41 0 0 chr3 150985936 150985985 -76538593 + L1PA6 LINE L1 6103 6151 -3 294 149 14 40 chr3 150986166 150986240 -76538338 + MLT1G3 LTR MaLR 518 589 -1 1146 188 136 30 chr3 150986863 150987193 -76537385 + MLT1A1 LTR MaLR 1 365 0 182 418 44 0 chr3 150987282 150987373 -76537205 - L2 LINE L2 -25 3247 3153 348 321 79 6 chr3 150987489 150987654 -76536924 + MIR SINE MIR 76 252 -10 189 255 64 0 chr3 150987850 150987897 -76536681 - MIR3 SINE MIR -36 172 123 1472 222 151 59 chr3 150988226 150988717 -76535861 + MLT1H LTR MaLR 14 549 0 226 333 58 0 chr3 150989581 150989701 -76534877 + LTR16A LTR ERVL 1 127 -323 189 0 0 0 chr3 150990387 150990408 -76534170 + (T)n Simple_repeat Simple_repeat 1 21 0 343 260 20 27 chr3 150990817 150990963 -76533615 + MLT1H LTR MaLR 99 243 -306 288 284 206 5 chr3 150990990 150991184 -76533394 + MLT1H LTR MaLR 355 587 -8 528 297 34 0 chr3 150991221 150991430 -76533148 + L1ME LINE L1 5500 5715 -406 236 301 0 14 chr3 150991700 150991773 -76532805 - MLT1I LTR MaLR -8 401 330 290 259 0 24 chr3 150992173 150992258 -76532320 - MLT1I LTR MaLR -228 181 99 340 231 103 92 chr3 150992391 150992586 -76531992 - MIR SINE MIR -46 216 20 381 338 83 23 chr3 150992748 150992881 -76531697 + L2 LINE L2 3123 3263 -9 588 29 0 0 chr3 150992882 150992952 -76531626 + (TGGA)n Simple_repeat Simple_repeat 2 71 0 634 203 169 0 chr3 150993022 150993170 -76531408 + MER5A DNA MER1_type 9 181 -8 285 290 107 8 chr3 150993682 150993813 -76530765 - MIR SINE MIR -56 206 63 253 368 97 9 chr3 150994403 150994517 -76530061 - MIR SINE MIR -65 143 20 1820 305 84 21 chr3 150994558 150995534 -76529044 + L2 LINE L2 2144 3190 -123 756 224 213 0 chr3 150995600 150995783 -76528795 - MER58A DNA MER1_type -1 223 2 22 56 0 0 chr3 150996279 150996315 -76528263 + AT_rich Low_complexity Low_complexity 1 36 0 282 29 0 0 chr3 150996947 150996982 -76527596 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 371 316 90 8 chr3 150997954 150998087 -76526491 + MIR SINE MIR 49 192 -70 855 296 111 31 chr3 150998722 150999147 -76525431 - L2 LINE L2 0 3313 2855 531 240 167 0 chr3 150999153 150999305 -76525273 - MER5A DNA MER1_type -2 187 4 509 296 142 3 chr3 150999592 150999816 -76524762 + MIR SINE MIR 9 256 -6 502 278 106 7 chr3 150999995 151000146 -76524432 + MIR3 SINE MIR 42 207 -1 32 43 0 0 chr3 151000663 151000709 -76523869 + AT_rich Low_complexity Low_complexity 1 46 0 685 216 8 0 chr3 151002172 151002306 -76522272 + FRAM SINE Alu 5 139 -37 189 0 0 0 chr3 151002310 151002331 -76522247 + (TA)n Simple_repeat Simple_repeat 2 22 0 244 336 16 0 chr3 151002342 151002464 -76522114 + L1M2 LINE L1 40 163 -6686 259 353 25 22 chr3 151002467 151002827 -76521751 + L1PA12 LINE L1 233 593 -6988 276 299 92 92 chr3 151003167 151003384 -76521194 + L1M2 LINE L1 796 1012 -5837 4095 171 60 8 chr3 151003720 151004581 -76519997 + L1PA12 LINE L1 2000 2905 -4679 1195 95 28 28 chr3 151006096 151006307 -76518271 + L1PA12 LINE L1 2897 3107 -4477 3443 124 46 4 chr3 151006307 151006849 -76517729 + L1PA16 LINE L1 5587 6151 -15 461 312 14 22 chr3 151007500 151007638 -76516940 + MER5A DNA MER1_type 51 187 -2 317 245 170 41 chr3 151008178 151008325 -76516253 + MER117 DNA MER1_type 31 196 -1 649 259 22 43 chr3 151009611 151009796 -76514782 - MER91B DNA MER1_type -9 181 1 201 191 0 64 chr3 151010261 151010308 -76514270 - L2 LINE L2 -74 3198 3155 1310 124 49 4 chr3 151010320 151010545 -76514033 + Charlie5 DNA MER1_type 6 240 -2372 358 323 8 53 chr3 151012586 151012719 -76511859 + MIR SINE MIR 21 147 -61 218 374 17 43 chr3 151013343 151013458 -76511120 + MIR SINE MIR 23 134 -74 253 294 140 28 chr3 151013928 151014071 -76510507 + MIR SINE MIR 48 206 -56 199 295 82 0 chr3 151014265 151014326 -76510252 + L3 LINE CR1 1231 1296 -281 800 275 52 8 chr3 151014388 151014639 -76509939 + MIR SINE MIR 1 262 0 218 283 10 50 chr3 151014683 151014782 -76509796 + L3 LINE CR1 1329 1423 -154 225 0 0 0 chr3 151015093 151015118 -76509460 + (TG)n Simple_repeat Simple_repeat 1 25 0 337 248 181 19 chr3 151015390 151015495 -76509083 - L2 LINE L2 0 3313 3192 1286 184 45 16 chr3 151015501 151015811 -76508767 - MER33 DNA MER1_type -4 320 2 260 234 143 0 chr3 151015888 151015965 -76508613 + MER63 DNA MER1_type 1 714 -348 683 158 93 148 chr3 151016329 151016640 -76507938 - L1MA8 LINE L1 -6 6285 5992 440 231 0 0 chr3 151017509 151017617 -76506961 - MER53 DNA DNA -81 108 1 201 349 58 0 chr3 151017874 151017960 -76506618 - MIR SINE MIR -18 244 154 1631 179 15 9 chr3 151017987 151018327 -76506251 + L1MC3 LINE L1 7443 7784 -1 382 281 88 9 chr3 151018388 151018502 -76506076 - MIR SINE MIR -115 147 25 334 234 52 0 chr3 151019890 151019967 -76504611 - MIR SINE MIR -1 261 181 1417 232 37 53 chr3 151020552 151020987 -76503591 + MER74A LTR ERVL 1 428 -130 710 119 30 22 chr3 151020989 151021123 -76503455 + Ricksha DNA DNA 6 140 -1114 * 6496 139 26 22 chr3 151021102 151022306 -76502272 + Ricksha DNA DNA 1710 2919 -327 1246 51 6 0 chr3 151022317 151022475 -76502103 - L1PA5 LINE L1 -8 6146 5988 1093 127 80 0 chr3 151022506 151022719 -76501859 + Ricksha DNA DNA 2911 3140 -111 858 167 0 0 chr3 151022729 151022855 -76501723 + FLAM_C SINE Alu 1 126 -17 1317 272 45 24 chr3 151023069 151023488 -76501090 - LTR16C LTR ERVL -2 489 62 357 339 55 6 chr3 151024103 151024268 -76500310 + MIR SINE MIR 20 192 -70 1471 227 142 25 chr3 151025333 151025813 -76498765 + MLT1H LTR MaLR 4 539 -10 302 265 77 53 chr3 151026154 151026324 -76498254 + L2 LINE L2 1805 1978 -1336 335 308 56 0 chr3 151026624 151026731 -76497847 + MIR SINE MIR 30 142 -66 322 248 8 85 chr3 151026742 151026783 -76497795 + L2 LINE L2 3191 3234 -79 2377 100 0 0 chr3 151026783 151027083 -76497495 - AluSq SINE Alu -13 300 1 322 248 8 85 chr3 151027083 151027170 -76497408 + L2 LINE L2 3234 3309 -4 484 265 43 68 chr3 151027371 151027533 -76497045 - MER5A DNA MER1_type -4 185 28 516 243 227 16 chr3 151028579 151028764 -76495814 - MER58A DNA MER1_type 0 224 1 1019 269 72 25 chr3 151028786 151029191 -76495387 + LTR16A LTR ERVL 21 444 -6 274 305 13 93 chr3 151029452 151029603 -76494975 - MER5A DNA MER1_type -44 145 7 279 0 0 0 chr3 151029699 151029730 -76494848 + (CA)n Simple_repeat Simple_repeat 2 32 0 375 273 29 21 chr3 151029939 151030130 -76494448 - Charlie8 DNA MER1_type -2180 237 85 22 0 0 0 chr3 151030838 151030860 -76493718 + AT_rich Low_complexity Low_complexity 1 22 0 258 310 147 0 chr3 151030926 151031055 -76493523 + MIR3 SINE MIR 42 189 -19 422 284 119 46 chr3 151031074 151031402 -76493176 - MLT1K LTR MaLR -5 583 232 1009 193 19 28 chr3 151033099 151033312 -76491266 + MER58A DNA MER1_type 10 220 -4 358 247 11 0 chr3 151034101 151034190 -76490388 - MER103 DNA DNA -49 117 28 248 250 0 0 chr3 151034426 151034490 -76490088 - MLT1I LTR MaLR -263 146 83 497 229 59 0 chr3 151035568 151035721 -76488857 + MER103 DNA DNA 3 164 -2 25 31 0 0 chr3 151035959 151035991 -76488587 + AT_rich Low_complexity Low_complexity 1 32 0 514 259 152 19 chr3 151036263 151036421 -76488157 - MER5A DNA MER1_type -2 187 9 1362 174 123 0 chr3 151038191 151038467 -76486111 + MER1B DNA MER1_type 30 339 0 1707 75 0 4 chr3 151038517 151038745 -76485833 + L1PA7 LINE L1 5925 6151 -3 245 258 26 179 chr3 151040597 151040737 -76483841 - MER5A DNA MER1_type -3 186 81 1904 142 0 4 chr3 151040737 151041012 -76483566 - AluSg SINE Alu -36 274 1 245 258 26 179 chr3 151041012 151041061 -76483517 - MER5A DNA MER1_type -108 81 26 535 277 168 0 chr3 151041632 151041787 -76482791 - MER5A DNA MER1_type 0 189 9 390 318 116 12 chr3 151041812 151041985 -76482593 + MIR SINE MIR 31 221 -41 826 247 39 17 chr3 151042170 151042401 -76482177 + MLT1D LTR MaLR 206 441 -64 548 284 37 0 chr3 151042477 151042611 -76481967 + L2 LINE L2 3175 3313 0 620 194 43 0 chr3 151042956 151043095 -76481483 + MER5A DNA MER1_type 8 152 -37 1137 127 0 69 chr3 151043095 151043284 -76481294 + AluJo SINE Alu 1 176 -136 1744 172 64 0 chr3 151043480 151043823 -76480755 + MLT1A1 LTR MaLR 1 365 0 331 322 81 29 chr3 151043876 151044050 -76480528 + L1MC5 LINE L1 7743 7925 -36 2005 145 0 0 chr3 151044057 151044340 -76480238 + AluSx SINE Alu 1 283 -29 263 168 53 11 chr3 151044345 151044440 -76480138 + (TA)n Simple_repeat Simple_repeat 2 100 0 251 144 27 57 chr3 151044520 151044829 -76479749 + (TATAA)n Simple_repeat Simple_repeat 1 299 0 233 80 86 69 chr3 151044800 151044975 -76479603 + (TA)n Simple_repeat Simple_repeat 1 178 0 * 349 115 97 6 chr3 151045016 151045181 -76479397 + (TA)n Simple_repeat Simple_repeat 1 180 0 416 178 37 37 chr3 151045437 151045544 -76479034 - MER53 DNA DNA -82 107 1 425 309 106 64 chr3 151046368 151046772 -76477806 - MLT1K LTR MaLR 0 588 168 1195 285 116 22 chr3 151047300 151047791 -76476787 + MLT1K LTR MaLR 38 574 -14 3535 112 70 5 chr3 151047914 151048510 -76476068 - LTR24C LTR ERV1 0 635 1 504 289 60 20 chr3 151048516 151048665 -76475913 - MER91A DNA MER1_type -37 159 5 2073 225 75 11 chr3 151049050 151049583 -76474995 + MLT1F1 LTR MaLR 1 567 0 823 200 56 6 chr3 151050171 151050351 -76474227 - MER5A DNA MER1_type 0 189 1 245 258 265 15 chr3 151050596 151050728 -76473850 - MIR SINE MIR -12 250 86 2090 142 3 10 chr3 151051364 151051675 -76472903 + AluJb SINE Alu 1 309 -3 1413 241 70 32 chr3 151051722 151052195 -76472383 - LTR16C LTR ERVL 0 491 1 3310 126 19 36 chr3 151053252 151053552 -76471026 + Tigger3b DNA MER2_type 1 289 -2739 2339 46 7 0 chr3 151053552 151053855 -76470723 - AluY SINE Alu 0 305 1 3310 126 19 36 chr3 151053855 151054141 -76470437 + Tigger3b DNA MER2_type 289 578 -653 813 112 30 52 chr3 151054154 151054288 -76470290 + FLAM_C SINE Alu 7 137 -6 3669 127 30 6 chr3 151054310 151054934 -76469644 + Tigger3b DNA MER2_type 593 1231 0 1648 174 39 90 chr3 151054941 151055641 -76468937 + MER4A LTR ERV1 1 455 -10 769 131 7 8 chr3 151055646 151055802 -76468776 - L1MA8 LINE L1 -164 6127 5979 572 98 0 59 chr3 151055811 151055932 -76468646 - AluSg/x SINE Alu 0 312 216 810 102 0 0 chr3 151055933 151056041 -76468537 - AluSq/x SINE Alu -204 108 1 2326 114 28 0 chr3 151056046 151056398 -76468180 - L1PA10 LINE L1 -4 6164 5803 518 335 38 24 chr3 151056407 151056694 -76467884 - MERVL LTR ERVL -2336 3149 2859 2351 87 3 0 chr3 151056700 151057010 -76467568 - AluSq SINE Alu -2 311 1 1537 177 39 106 chr3 151057064 151057400 -76467178 + L1MD3 LINE L1 7510 7867 -128 440 132 0 0 chr3 151057400 151057476 -76467102 + L1MA1 LINE L1 6227 6302 0 1537 177 39 106 chr3 151057476 151057522 -76467056 + L1MD3 LINE L1 7867 7915 -80 625 124 108 16 chr3 151057522 151057651 -76466927 - L1MA5 LINE L1 -2 6298 6158 1537 177 39 106 chr3 151057651 151057758 -76466820 + L1MD3 LINE L1 7915 7967 -28 465 177 0 0 chr3 151058002 151058081 -76466497 - MER96 DNA MER1_type? -91 84 6 618 28 0 0 chr3 151058121 151058193 -76466385 - tRNA-Cys-TGC tRNA tRNA -3 72 1 189 132 0 0 chr3 151058663 151058701 -76465877 + (A)n Simple_repeat Simple_repeat 1 38 0 706 259 49 29 chr3 151059063 151059306 -76465272 - MIR SINE MIR 0 262 15 203 292 125 96 chr3 151059684 151060091 -76464487 + L2 LINE L2 2838 3256 -16 535 287 56 46 chr3 151060528 151060744 -76463834 + MIR SINE MIR 45 262 0 662 0 0 0 chr3 151060819 151060891 -76463687 - tRNA-Cys-TGC tRNA tRNA -3 72 1 461 294 27 7 chr3 151061966 151062112 -76462466 - MIR3 SINE MIR -10 198 50 189 292 0 0 chr3 151062155 151062203 -76462375 + L2 LINE L2 3221 3268 -4 387 267 11 0 chr3 151062223 151062313 -76462265 - MER81 DNA DNA -1 113 23 300 241 0 0 chr3 151062359 151062442 -76462136 + MER113 DNA MER1_type? 32 114 -407 813 233 0 0 chr3 151062566 151062729 -76461849 - MIR SINE MIR -23 239 77 1636 208 97 21 chr3 151062793 151063226 -76461352 + MLT2B1 LTR ERVL 9 474 -46 300 247 0 0 chr3 151063226 151063311 -76461267 + (TG)n Simple_repeat Simple_repeat 1 85 0 273 79 0 41 chr3 151063317 151063380 -76461198 + MLT2C2 LTR ERVL 429 464 0 1036 150 31 19 chr3 151063847 151064143 -76460435 + L1MA9 LINE L1 5159 5459 -743 450 209 22 0 chr3 151064144 151064283 -76460295 + (TA)n Simple_repeat Simple_repeat 2 143 0 327 283 0 11 chr3 151064283 151064375 -76460203 - L1MC4 LINE L1 -1337 6705 6615 186 189 0 0 chr3 151064378 151064415 -76460163 + (CATATA)n Simple_repeat Simple_repeat 2 38 0 2588 155 19 15 chr3 151064416 151064938 -76459640 + L1MA9 LINE L1 5789 6312 0 244 292 21 21 chr3 151065006 151065102 -76459476 + MIR3 SINE MIR 105 200 -8 3617 184 35 7 chr3 151065333 151066101 -76458477 + L1MB2 LINE L1 5382 6171 0 21 0 0 0 chr3 151066574 151066595 -76457983 + AT_rich Low_complexity Low_complexity 1 21 0 206 156 22 0 chr3 151066817 151066862 -76457716 + CT-rich Low_complexity Low_complexity 1 46 0 1590 230 133 38 chr3 151067235 151067835 -76456743 + MLT2F LTR ERVL 1 657 -6 2355 96 3 0 chr3 151068262 151068564 -76456014 + AluSp SINE Alu 1 303 -10 385 240 47 67 chr3 151068594 151068744 -76455834 + MIR3 SINE MIR 49 195 -13 264 238 44 75 chr3 151069695 151069855 -76454723 + MLT1G1-int LTR MaLR 1389 1543 -192 914 251 40 55 chr3 151070058 151070404 -76454174 + MLT1G1 LTR MaLR 73 413 -182 496 158 8 102 chr3 151072342 151072469 -76452109 - MER33 DNA MER1_type 0 363 249 538 213 202 11 chr3 151073309 151073497 -76451081 - MER33 DNA MER1_type -100 224 1 1015 136 27 22 chr3 151073613 151073797 -76450781 - MER53 DNA DNA -3 186 2 21 0 0 0 chr3 151074153 151074174 -76450404 + AT_rich Low_complexity Low_complexity 1 21 0 2482 80 0 6 chr3 151074176 151074488 -76450090 + AluSg SINE Alu 1 310 0 655 175 0 9 chr3 151074725 151074839 -76449739 - MER5A DNA MER1_type -76 113 1 490 242 82 50 chr3 151076278 151076460 -76448118 + MER5A DNA MER1_type 2 189 0 295 325 84 13 chr3 151077100 151077254 -76447324 + L2 LINE L2 3133 3297 -16 785 229 51 0 chr3 151077466 151077641 -76446937 + MER3 DNA MER1_type 1 184 -25 777 210 60 6 chr3 151077784 151077951 -76446627 - MER97a DNA MER1_type? -717 177 2 2130 102 31 7 chr3 151078282 151078575 -76446003 + AluSg SINE Alu 1 300 -10 382 265 53 17 chr3 151080098 151080276 -76444302 + MIR SINE MIR 23 207 -55 2557 126 48 5 chr3 151081198 151081570 -76443008 + MLT1B LTR MaLR 1 388 -2 2429 84 0 7 chr3 151081990 151082289 -76442289 - AluSg SINE Alu -13 297 1 671 175 120 40 chr3 151082554 151082754 -76441824 - L1MC5 LINE L1 -44 7917 7702 469 248 64 59 chr3 151083342 151083544 -76441034 + MIR SINE MIR 8 210 -52 457 346 82 5 chr3 151083586 151083794 -76440784 + MIR SINE MIR 8 231 -31 462 237 108 7 chr3 151084989 151085128 -76439450 + MER103 DNA DNA 13 165 -1 2146 151 10 70 chr3 151085411 151085823 -76438755 + MLT1B LTR MaLR 1 387 -3 798 311 40 94 chr3 151085852 151086277 -76438301 - L2 LINE L2 0 3272 2871 2911 181 13 13 chr3 151086367 151086889 -76437689 + L1MB7 LINE L1 5615 6140 -44 2235 88 0 7 chr3 151086889 151087224 -76437354 + AluSg SINE Alu 1 333 0 2911 181 13 13 chr3 151087224 151087251 -76437327 + L1MB7 LINE L1 6139 6165 -19 355 231 75 64 chr3 151087286 151087459 -76437119 + L1MEd LINE L1 90 264 -5941 413 187 27 0 chr3 151087648 151087723 -76436855 + MER116 DNA Mariner 3 79 -1 243 346 80 6 chr3 151087827 151087989 -76436589 + L1MEd LINE L1 1582 1755 -4641 1107 284 94 23 chr3 151087997 151088730 -76435848 + L1MEd LINE L1 2352 3136 -3079 576 307 28 23 chr3 151088751 151088966 -76435612 + LTR33 LTR ERVL 23 238 -283 554 254 69 0 chr3 151089021 151089194 -76435384 + LTR33 LTR ERVL 335 519 -2 398 252 208 17 chr3 151089204 151089498 -76435080 + L1MEd LINE L1 3139 3488 -2727 248 259 0 59 chr3 151089541 151089626 -76434952 - MER63 DNA MER1_type -4 1057 978 371 203 0 0 chr3 151089627 151089691 -76434887 - MER63 DNA MER1_type -311 751 688 295 341 22 7 chr3 151089693 151089828 -76434750 + L1MEd LINE L1 3541 3677 -2538 27 0 0 0 chr3 151090033 151090060 -76434518 + AT_rich Low_complexity Low_complexity 1 27 0 2382 67 40 0 chr3 151090060 151090357 -76434221 - AluY SINE Alu -2 309 1 376 324 27 78 chr3 151090394 151090690 -76433888 + L1MEd LINE L1 3954 4234 -1981 276 30 0 0 chr3 151090893 151090926 -76433652 + (CCA)n Simple_repeat Simple_repeat 1 33 0 915 232 33 43 chr3 151091132 151091434 -76433144 + MER5C DNA MER1_type 4 302 -22 433 250 36 50 chr3 151091429 151091569 -76433009 + MER5B DNA MER1_type 33 170 -8 * 336 258 32 0 chr3 151091579 151091672 -76432906 + MER5A DNA MER1_type 11 106 -83 489 158 40 26 chr3 151092013 151092360 -76432218 + (CA)n Simple_repeat Simple_repeat 1 352 0 1466 179 43 0 chr3 151092473 151092753 -76431825 + AluJo SINE Alu 11 302 -10 191 274 89 119 chr3 151092761 151092929 -76431649 + L2 LINE L2 3002 3164 -108 769 162 15 0 chr3 151093337 151093473 -76431105 + MER82 DNA MER2_type 1 138 -515 359 328 110 14 chr3 151093492 151093837 -76430741 - L1M4 LINE L1 -2140 4006 3629 685 292 0 6 chr3 151093922 151094083 -76430495 + MER82 DNA MER2_type 493 652 -1 492 159 68 0 chr3 151094834 151094922 -76429656 - MER5A DNA MER1_type -85 104 11 790 227 49 32 chr3 151094946 151095131 -76429447 - MER5A DNA MER1_type -1 188 1 185 241 62 89 chr3 151095508 151095586 -76428992 + L2 LINE L2 3191 3267 -46 2339 103 3 0 chr3 151095586 151095887 -76428691 + AluSp SINE Alu 1 302 -11 185 241 62 89 chr3 151095887 151095920 -76428658 + L2 LINE L2 3267 3299 -14 292 229 0 21 chr3 151095925 151096021 -76428557 + GA-rich Low_complexity Low_complexity 3 96 0 466 169 0 0 chr3 151096994 151097059 -76427519 + AluJ/FLAM SINE Alu 2 66 -246 207 152 0 0 chr3 151097066 151097112 -76427466 + A-rich Low_complexity Low_complexity 1 46 0 2368 193 64 17 chr3 151097502 151097984 -76426594 - LTR22 LTR ERVK -4 505 1 2078 118 0 4 chr3 151098227 151098536 -76426042 + AluSg SINE Alu 1 308 0 433 231 19 39 chr3 151098541 151098645 -76425933 - L2 LINE L2 0 3313 3212 250 182 0 0 chr3 151098846 151098890 -76425688 - L2 LINE L2 -5 3308 3265 552 241 75 70 chr3 151098904 151099091 -76425487 - MER5A DNA MER1_type 0 189 2 1737 106 99 21 chr3 151099142 151099424 -76425154 + AluSx SINE Alu 1 304 -8 2017 134 3 10 chr3 151099434 151099741 -76424837 + AluY SINE Alu 1 305 -6 359 226 54 11 chr3 151099931 151100024 -76424554 - MIR SINE MIR -10 252 156 1897 189 58 87 chr3 151100026 151100477 -76424101 + MLT1D LTR MaLR 1 463 -42 1747 79 16 40 chr3 151100477 151100643 -76423935 - L1MA3 LINE L1 0 6305 6137 230 0 33 0 chr3 151100643 151100673 -76423905 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1930 109 72 0 chr3 151100673 151100938 -76423640 - AluSx SINE Alu -28 284 1 1747 79 16 40 chr3 151100938 151101022 -76423556 - L1MA3 LINE L1 -166 6139 6060 1897 189 58 87 chr3 151101022 151101090 -76423488 + MLT1D LTR MaLR 463 505 0 182 289 224 0 chr3 151101096 151101172 -76423406 - MIR SINE MIR -123 139 47 188 354 62 35 chr3 151101196 151101309 -76423269 - L2 LINE L2 -768 2546 2431 529 225 312 6 chr3 151101849 151102022 -76422556 + MIR SINE MIR 27 252 -10 894 246 75 72 chr3 151102498 151102843 -76421735 + L2 LINE L2 2964 3309 -4 1373 93 77 93 chr3 151103432 151103556 -76421022 + MER39B LTR ERV1 1 125 -528 8058 35 0 7 chr3 151103556 151105077 -76419501 - L1PA4 LINE L1 -3 6152 4637 1373 93 77 93 chr3 151105077 151105211 -76419367 + MER39B LTR ERV1 125 255 -398 1208 123 0 0 chr3 151105211 151105374 -76419204 + AluSc SINE Alu 133 295 -14 331 114 0 0 chr3 151105380 151105423 -76419155 + MER39B LTR ERV1 251 293 -360 1984 147 44 85 chr3 151105423 151105880 -76418698 - LTR8 LTR ERV1 0 691 254 835 138 0 88 chr3 151105879 151105993 -76418585 - LTR8 LTR ERV1 -546 145 47 * 3376 96 142 57 chr3 151105993 151106325 -76418253 + LTR10E LTR ERV1 1 303 -330 2982 6 0 0 chr3 151106325 151106643 -76417935 + AluYb8 SINE Alu 1 318 0 3376 96 142 57 chr3 151106643 151106893 -76417685 + LTR10E LTR ERV1 303 633 0 835 138 0 88 chr3 151106893 151106937 -76417641 - LTR8 LTR ERV1 -644 47 1 2231 116 55 3 chr3 151106937 151107283 -76417295 + MER39B LTR ERV1 290 653 0 182 36 0 36 chr3 151107438 151107466 -76417112 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 397 159 0 0 chr3 151107522 151107585 -76416993 + MLT1C LTR MaLR 405 467 0 2292 93 3 31 chr3 151107709 151108030 -76416548 - AluSq SINE Alu -1 312 1 180 301 133 18 chr3 151108172 151108285 -76416293 + MER5A DNA MER1_type 36 161 -28 2662 126 43 31 chr3 151108503 151108827 -76415751 - MSTC LTR MaLR -2 426 94 2049 115 3 51 chr3 151108827 151109139 -76415439 - AluSq SINE Alu -14 299 3 2662 126 43 31 chr3 151109139 151109235 -76415343 - MSTC LTR MaLR -334 94 1 26 0 0 0 chr3 151109291 151109317 -76415261 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr3 151109545 151109567 -76415011 + AT_rich Low_complexity Low_complexity 1 22 0 513 159 0 80 chr3 151109644 151109708 -76414870 + U13 snRNA snRNA 1 54 -50 2383 81 0 3 chr3 151109708 151110017 -76414561 - AluSg1 SINE Alu 0 309 2 513 159 0 80 chr3 151110017 151110065 -76414513 + U13 snRNA snRNA 54 104 0 4961 127 53 13 chr3 151110201 151110950 -76413628 + MER4E LTR ERV1 1 779 0 227 290 103 20 chr3 151111404 151111656 -76412922 + L1P LINE L1 3527 3799 -2347 1917 123 17 7 chr3 151111705 151112005 -76412573 - LTR23 LTR ERV1 0 437 135 1220 182 129 68 chr3 151112006 151112286 -76412292 - AluJo SINE Alu -1 301 5 750 334 49 19 chr3 151112336 151112761 -76411817 + L2 LINE L2 1720 2157 -1157 5321 134 10 24 chr3 151112776 151113569 -76411009 - LTR39 LTR ERV1 0 783 2 457 186 0 12 chr3 151113574 151113660 -76410918 + MIR SINE MIR 84 168 -94 875 139 32 13 chr3 151113666 151113808 -76410770 - MER65C LTR ERV1 0 461 317 3312 156 43 52 chr3 151113808 151114647 -76409931 - LTR1 LTR ERV1 0 785 1 1400 206 45 10 chr3 151114647 151114957 -76409621 - MER65C LTR ERV1 -138 323 3 288 279 0 0 chr3 151114958 151115026 -76409552 + MIR SINE MIR 170 237 -25 432 237 21 0 chr3 151115027 151115124 -76409454 + MER5B DNA MER1_type 1 99 -79 342 211 0 0 chr3 151115163 151115226 -76409352 - AluJb SINE Alu -2 300 238 2243 148 48 16 chr3 151115226 151115725 -76408853 + MER41B LTR ERV1 1 595 -40 1248 182 21 25 chr3 151115726 151115968 -76408610 - AluJb SINE Alu -71 241 1 234 216 39 0 chr3 151115968 151116019 -76408559 + MER5B DNA MER1_type 123 175 -3 2366 115 55 12 chr3 151116164 151116577 -76408001 - LTR23 LTR ERV1 -1 466 2 1143 281 102 23 chr3 151116582 151117176 -76407402 + L2 LINE L2 2468 3150 -163 3534 151 46 20 chr3 151117176 151117764 -76406814 - LTR26 LTR ERV1 0 603 1 1143 281 102 23 chr3 151117764 151117943 -76406635 + L2 LINE L2 3150 3313 0 843 269 135 30 chr3 151118415 151118853 -76405725 + LTR16B LTR ERVL 10 464 0 2302 107 0 0 chr3 151119526 151119825 -76404753 + AluSx SINE Alu 1 299 -13 249 350 10 0 chr3 151119888 151119985 -76404593 + MIR SINE MIR 156 253 -9 2070 169 81 17 chr3 151120255 151120664 -76403914 - MER63B DNA MER1_type 0 436 2 338 208 183 8 chr3 151120935 151121055 -76403523 + L2 LINE L2 3172 3312 -1 750 191 7 0 chr3 151121082 151121223 -76403355 - Charlie1 DNA MER1_type 0 2761 2620 * 914 201 20 91 chr3 151121204 151121366 -76403212 - Charlie1 DNA MER1_type -2519 242 127 1961 139 0 0 chr3 151121366 151121676 -76402902 - AluSg SINE Alu 0 310 1 914 201 20 91 chr3 151121676 151121795 -76402783 - Charlie1 DNA MER1_type -2634 127 1 2285 143 132 8 chr3 151122288 151122666 -76401912 - MSTA LTR MaLR -3 425 1 24 32 0 0 chr3 151122700 151122731 -76401847 + AT_rich Low_complexity Low_complexity 1 31 0 360 0 0 0 chr3 151123204 151123244 -76401334 + (TG)n Simple_repeat Simple_repeat 2 41 0 31 0 0 0 chr3 151123292 151123323 -76401255 + AT_rich Low_complexity Low_complexity 1 31 0 224 167 21 0 chr3 151123674 151123722 -76400856 + (TA)n Simple_repeat Simple_repeat 2 50 0 985 178 45 15 chr3 151123792 151123994 -76400584 - L2 LINE L2 0 3313 3106 1646 199 71 34 chr3 151124023 151124461 -76400117 + LTR2B LTR ERV1 37 490 0 4650 75 3 0 chr3 151124461 151125097 -76399481 + Harlequin LTR ERV1 1 638 -6258 1883 177 68 32 chr3 151125097 151125538 -76399040 - LTR2B LTR ERV1 0 490 34 35794 74 18 17 chr3 151125558 151127169 -76397409 - Harlequin LTR ERV1 0 6896 5288 295 26 0 0 chr3 151127169 151127208 -76397370 - AluY SINE Alu -169 132 94 35794 74 18 17 chr3 151127208 151130648 -76393930 - Harlequin LTR ERV1 -1608 5288 1803 6756 74 128 13 chr3 151130628 151130765 -76393813 - HERVE LTR ERV1 -3668 4117 3997 * 198 0 0 0 chr3 151130765 151130787 -76393791 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 6756 74 128 13 chr3 151130787 151131739 -76392839 - HERVE LTR ERV1 -3788 3997 263 732 131 8 15 chr3 151131734 151131864 -76392714 - HERVE LTR ERV1 -7430 383 255 * 2447 119 2 25 chr3 151131850 151132244 -76392334 - HERVE LTR ERV1 -6511 385 1 2006 159 68 32 chr3 151132244 151132685 -76391893 - LTR2B LTR ERV1 0 490 34 44264 61 22 24 chr3 151132703 151138975 -76385603 + Harlequin LTR ERV1 632 6895 -1 1827 173 68 34 chr3 151138999 151139439 -76385139 + LTR2B LTR ERV1 36 490 0 645 295 155 4 chr3 151139443 151139780 -76384798 - L2 LINE L2 -214 3099 2708 366 236 46 40 chr3 151140079 151140253 -76384325 - L1ME4a LINE L1 0 6121 5947 902 178 19 19 chr3 151140617 151140831 -76383747 + MER96B DNA MER1_type? 1 214 -203 377 318 0 28 chr3 151140864 151140971 -76383607 + MER5A DNA MER1_type 86 189 0 1017 215 118 33 chr3 151141010 151141340 -76383238 + MLT1E LTR MaLR 229 592 -1 48 0 0 0 chr3 151141346 151141394 -76383184 + AT_rich Low_complexity Low_complexity 1 48 0 1345 219 23 23 chr3 151141534 151141918 -76382660 - L1MB8 LINE L1 -5 6173 5790 1282 278 33 18 chr3 151142567 151142956 -76381622 + LTR16A LTR ERVL 52 446 -4 2400 146 3 3 chr3 151143156 151143520 -76381058 + THE1B LTR MaLR 1 364 0 2222 112 0 16 chr3 151144416 151144719 -76379859 - AluSx SINE Alu -14 298 1 2165 102 6 40 chr3 151145256 151145578 -76379000 - AluSx SINE Alu -1 311 1 2294 119 0 3 chr3 151145869 151146180 -76378398 + AluSg SINE Alu 1 310 0 226 253 138 23 chr3 151146208 151146295 -76378283 + MIR3 SINE MIR 71 167 -41 262 279 89 0 chr3 151148431 151148510 -76376068 - MIR SINE MIR -17 245 160 425 129 81 5 chr3 151148511 151148632 -76375946 - MER53 DNA DNA -1 188 2 721 223 14 0 chr3 151148654 151148793 -76375785 - MIR SINE MIR -110 152 12 385 248 80 22 chr3 151149081 151149218 -76375360 + MER103 DNA DNA 3 147 -19 249 220 50 60 chr3 151149318 151149418 -76375160 - L1MC5 LINE L1 -73 7888 7790 2362 98 0 0 chr3 151149677 151149974 -76374604 - AluSx SINE Alu -14 298 2 608 222 0 0 chr3 151150070 151150187 -76374391 + FRAM SINE Alu 28 144 -32 757 193 0 14 chr3 151150219 151150359 -76374219 + FLAM_C SINE Alu 1 138 -5 467 236 38 127 chr3 151150927 151151164 -76373414 - MIR SINE MIR 0 262 47 1838 166 72 46 chr3 151151748 151152165 -76372413 + MSTC LTR MaLR 1 428 0 492 280 147 65 chr3 151152356 151152824 -76371754 - L2 LINE L2 -33 3280 2778 2449 89 0 0 chr3 151152960 151153262 -76371316 + AluSq SINE Alu 1 302 -11 2468 94 0 0 chr3 151153658 151153965 -76370613 - AluSc SINE Alu -2 307 1 216 0 0 0 chr3 151154620 151154644 -76369934 + (CA)n Simple_repeat Simple_repeat 2 25 0 747 266 75 18 chr3 151154772 151154998 -76369580 + MIR SINE MIR 14 252 -10 1115 148 84 5 chr3 151155088 151155290 -76369288 + MER20 DNA MER1_type 1 218 -1 2259 112 0 0 chr3 151156259 151156553 -76368025 + AluSg SINE Alu 2 295 -15 1950 97 93 0 chr3 151156561 151156830 -76367748 + AluSx SINE Alu 1 294 -18 719 230 73 0 chr3 151157039 151157204 -76367374 + MER5B DNA MER1_type 2 178 0 2508 82 0 0 chr3 151157421 151157727 -76366851 + AluSq SINE Alu 1 306 -7 669 202 51 56 chr3 151158276 151158454 -76366124 - MER5B DNA MER1_type -1 177 1 548 267 126 0 chr3 151158738 151158900 -76365678 - MER5A DNA MER1_type 0 189 4 2177 118 0 7 chr3 151158938 151159244 -76365334 - AluSx SINE Alu -8 304 1 947 198 39 0 chr3 151159372 151159554 -76365024 + MER5A DNA MER1_type 1 189 0 580 254 16 48 chr3 151159824 151160013 -76364565 + MER5A DNA MER1_type 7 189 0 564 237 160 0 chr3 151160021 151160177 -76364401 - MER5A DNA MER1_type 0 189 9 362 282 97 8 chr3 151160243 151160367 -76364211 - L3 LINE CR1 -18 1559 1425 220 302 48 0 chr3 151160394 151160457 -76364121 - L2 LINE L2 -2 3270 3205 204 97 0 0 chr3 151161637 151161668 -76362910 + (GA)n Simple_repeat Simple_repeat 2 32 0 360 313 45 55 chr3 151161818 151162019 -76362559 - MIR SINE MIR -33 229 31 636 171 71 59 chr3 151162042 151162212 -76362366 + MER5B DNA MER1_type 4 175 -3 2443 102 0 0 chr3 151162813 151163126 -76361452 + AluSq SINE Alu 1 313 0 217 233 0 0 chr3 151163240 151163283 -76361295 + GA-rich Low_complexity Low_complexity 2 44 0 390 245 140 44 chr3 151163821 151164011 -76360567 + MIR SINE MIR 3 210 -52 716 267 166 74 chr3 151164472 151165003 -76359575 - L2 LINE L2 -12 3301 2674 2400 63 0 0 chr3 151165003 151165288 -76359290 + AluY SINE Alu 1 285 -26 716 267 166 74 chr3 151165288 151165657 -76358921 - L2 LINE L2 -639 2674 2340 216 241 190 13 chr3 151165650 151165729 -76358849 - L2 LINE L2 -344 2969 2877 * 199 365 50 13 chr3 151165736 151165895 -76358683 - L2 LINE L2 -955 2359 2195 324 0 0 0 chr3 151166088 151166124 -76358454 + (TG)n Simple_repeat Simple_repeat 2 37 0 904 257 92 68 chr3 151167199 151167732 -76356846 - L1MC4a LINE L1 -1825 5983 5438 251 254 0 0 chr3 151167748 151167811 -76356767 + L1 LINE L1 4062 4124 -2022 1702 95 0 0 chr3 151167896 151168137 -76356441 - L1PA13 LINE L1 -1 6162 5922 3475 180 94 46 chr3 151168265 151169057 -76355521 - MER21B LTR ERV1 -3 860 26 2387 80 3 3 chr3 151169057 151169356 -76355222 + AluSq SINE Alu 1 299 -14 3475 180 94 46 chr3 151169356 151169384 -76355194 - MER21B LTR ERV1 -837 26 1 280 290 127 41 chr3 151169456 151170046 -76354532 - L1MC4a LINE L1 -1009 5137 4497 551 289 89 52 chr3 151170131 151170839 -76353739 - L1MC4a LINE L1 -1962 4184 3451 1226 164 14 5 chr3 151171326 151171540 -76353038 + MER20 DNA MER1_type 1 216 -3 213 298 0 0 chr3 151172800 151172847 -76351731 - L2 LINE L2 -3 3310 3264 1711 166 6 47 chr3 151172875 151173023 -76351555 + AluJo SINE Alu 1 153 -159 2291 114 10 0 chr3 151173023 151173322 -76351256 + AluSx SINE Alu 1 302 -10 1061 161 12 0 chr3 151173324 151173492 -76351086 + AluJo/FRAM SINE Alu 137 306 -6 662 259 33 28 chr3 151174100 151174334 -76350244 + MIR SINE MIR 20 251 -11 202 282 42 14 chr3 151174365 151174436 -76350142 + MIR3 SINE MIR 112 184 -24 229 261 141 11 chr3 151175833 151175925 -76348653 + MER5A DNA MER1_type 9 112 -77 339 246 91 27 chr3 151176080 151176190 -76348388 + MIR3 SINE MIR 92 208 0 1954 160 3 13 chr3 151176494 151176807 -76347771 - AluJb SINE Alu -2 310 1 339 25 0 0 chr3 151176857 151176897 -76347681 + (CA)n Simple_repeat Simple_repeat 2 41 0 1363 186 14 0 chr3 151176974 151177195 -76347383 + MER58A DNA MER1_type 1 224 0 307 336 40 40 chr3 151177312 151177461 -76347117 + MIR SINE MIR 6 154 -108 349 326 159 8 chr3 151177834 151177966 -76346612 + L2 LINE L2 3116 3267 -5 281 231 201 17 chr3 151178647 151178815 -76345763 + MIR SINE MIR 44 248 -14 1132 216 5 0 chr3 151179490 151179698 -76344880 - MER3 DNA MER1_type 0 209 1 188 348 174 0 chr3 151180503 151180595 -76343983 - L2 LINE L2 -2944 370 263 267 254 245 0 chr3 151180821 151180932 -76343646 - MIR SINE MIR -62 146 5 284 326 12 0 chr3 151181123 151181209 -76343369 + MIR SINE MIR 48 134 -128 22 0 0 0 chr3 151181209 151181231 -76343347 + AT_rich Low_complexity Low_complexity 1 22 0 2021 120 10 0 chr3 151181231 151181522 -76343056 - AluSx SINE Alu -18 294 1 589 188 34 0 chr3 151182708 151182825 -76341753 + MER45A DNA AcHobo 27 147 -31 236 259 17 0 chr3 151184233 151184291 -76340287 - MLT1I LTR MaLR -259 150 92 2233 92 0 4 chr3 151184493 151184840 -76339738 - AluSc SINE Alu 0 346 1 1845 149 3 3 chr3 151186776 151187104 -76337474 + AluJb SINE Alu 1 328 0 796 167 0 16 chr3 151187133 151187259 -76337319 + FLAM_C SINE Alu 2 125 -18 190 231 0 0 chr3 151188195 151188234 -76336344 - L2 LINE L2 -213 3059 3021 2320 51 14 0 chr3 151188255 151188530 -76336048 + AluY SINE Alu 1 279 -32 261 0 0 0 chr3 151188530 151188559 -76336019 + (TAAA)n Simple_repeat Simple_repeat 1 29 0 499 245 72 0 chr3 151188801 151188940 -76335638 - MER63A DNA MER1_type -3 207 59 359 299 43 8 chr3 151189022 151189139 -76335439 + L3 LINE CR1 1255 1375 -202 278 136 0 0 chr3 151189258 151189302 -76335276 + MER53 DNA DNA 7 50 -139 199 306 83 19 chr3 151189842 151189950 -76334628 + L2 LINE L2 3199 3313 0 209 362 16 58 chr3 151190289 151190477 -76334101 + L2 LINE L2 543 722 -2592 254 253 263 0 chr3 151191207 151191302 -76333276 - MIR SINE MIR -94 168 49 485 317 42 88 chr3 151191472 151191857 -76332721 - L2 LINE L2 -35 3237 2871 261 0 0 0 chr3 151192110 151192139 -76332439 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 206 347 125 34 chr3 151192277 151192574 -76332004 + L2 LINE L2 2268 2591 -723 2243 107 10 0 chr3 151192681 151192990 -76331588 + AluSq SINE Alu 1 312 -1 1840 178 0 13 chr3 151193086 151193400 -76331178 + AluJo SINE Alu 1 310 -2 272 257 218 20 chr3 151193679 151193780 -76330798 + L2 LINE L2 3137 3257 -15 2498 249 70 54 chr3 151194136 151194725 -76329853 - L2 LINE L2 -9 3304 2726 1993 119 3 33 chr3 151194725 151195028 -76329550 + AluSx SINE Alu 3 296 -16 2498 249 70 54 chr3 151195028 151195043 -76329535 - L2 LINE L2 -587 2726 2713 1966 162 3 0 chr3 151195043 151195340 -76329238 + AluJb SINE Alu 1 298 -14 2498 249 70 54 chr3 151195340 151195828 -76328750 - L2 LINE L2 -600 2713 2179 296 221 266 44 chr3 151196433 151196591 -76327987 - MIR3 SINE MIR -7 201 9 207 186 0 0 chr3 151197338 151197381 -76327197 + (CA)n Simple_repeat Simple_repeat 2 44 0 281 331 28 48 chr3 151197720 151197763 -76326815 + MIR3 SINE MIR 59 101 -107 1886 179 0 7 chr3 151197763 151198070 -76326508 - AluJo SINE Alu -7 305 1 281 331 28 48 chr3 151198070 151198171 -76326407 + MIR3 SINE MIR 101 200 -8 1391 111 0 0 chr3 151199086 151199275 -76325303 - AluSg/x SINE Alu -1 311 123 1789 126 89 0 chr3 151199280 151199551 -76325027 - MER41C LTR ERV1 -259 295 1 2068 139 3 0 chr3 151199572 151199867 -76324711 + AluSx SINE Alu 1 296 -16 343 296 129 0 chr3 151200071 151200257 -76324321 - HAL1 LINE L1 -737 1704 1495 43575 36 22 2 chr3 151200257 151206286 -76318292 - L1PA2 LINE L1 -1 6154 1 684 264 35 10 chr3 151206286 151206520 -76318058 - L1MCa LINE L1 -929 1512 1036 305 285 111 35 chr3 151206588 151206732 -76317846 - L1MCa LINE L1 -5004 1066 912 1001 186 0 0 chr3 151206785 151206952 -76317626 - FRAM SINE Alu -9 167 1 246 327 30 24 chr3 151206959 151207127 -76317451 - HAL1 LINE L1 -1490 1017 849 2066 236 63 85 chr3 151207228 151207995 -76316583 - L1MCa LINE L1 -5314 756 7 2755 146 20 26 chr3 151208713 151209171 -76315407 - LTR32 LTR ERVL 0 471 17 477 344 11 16 chr3 151209840 151210026 -76314552 - MER5A DNA MER1_type 0 189 5 1415 117 10 0 chr3 151210026 151210232 -76314346 - L1P4 LINE L1 -558 5608 5401 957 146 12 0 chr3 151210217 151210381 -76314197 + L1P4 LINE L1 5579 5744 -422 * 8001 169 39 74 chr3 151210381 151211071 -76313507 - MER52A LTR ERV1 0 1755 1042 2018 228 34 85 chr3 151211071 151211716 -76312862 - LTR9 LTR ERV1 0 612 1 8001 169 39 74 chr3 151211716 151212840 -76311738 - MER52A LTR ERV1 -713 1042 5 2970 108 14 18 chr3 151212840 151213274 -76311304 + L1PA16 LINE L1 5735 6166 0 192 77 0 0 chr3 151213386 151213412 -76311166 + (TG)n Simple_repeat Simple_repeat 2 27 0 6293 29 1 4 chr3 151213427 151214128 -76310450 + L1PA4 LINE L1 5457 6155 0 28 0 0 0 chr3 151214679 151214707 -76309871 + AT_rich Low_complexity Low_complexity 1 28 0 977 174 0 53 chr3 151214807 151214968 -76309610 + MIR SINE MIR 20 171 -91 1839 67 13 13 chr3 151214968 151215207 -76309371 + AluSc SINE Alu 65 303 -6 977 174 0 53 chr3 151215207 151215235 -76309343 + MIR SINE MIR 171 199 -63 337 163 0 0 chr3 151215405 151215454 -76309124 - THE1C LTR MaLR 0 428 380 2508 48 3 0 chr3 151217543 151217834 -76306744 - AluY SINE Alu -19 292 1 620 191 96 0 chr3 151218688 151218803 -76305775 + FLAM_A SINE Alu 1 126 -7 207 0 0 0 chr3 151218938 151218961 -76305617 + (TTG)n Simple_repeat Simple_repeat 2 24 0 2374 69 14 0 chr3 151219605 151219893 -76304685 - AluY SINE Alu -19 292 1 2303 109 0 16 chr3 151220695 151221008 -76303570 - AluSc SINE Alu -1 308 1 1404 123 57 14 chr3 151221724 151221990 -76302588 - THE1C LTR MaLR -25 350 1 943 280 121 26 chr3 151223120 151223616 -76300962 + HAL1 LINE L1 1373 1915 -592 904 110 44 7 chr3 151224036 151224172 -76300406 - MLT2A1 LTR ERVL 0 444 304 3769 209 89 12 chr3 151224183 151225003 -76299575 + L1M1 LINE L1 118 1000 -6565 821 248 29 45 chr3 151225272 151225582 -76298996 + pTR5 LTR ERV1 743 1047 -1391 3844 97 166 68 chr3 151225641 151226393 -76298185 + LTR12 LTR ERV1 1 826 0 957 191 91 22 chr3 151227766 151227997 -76296581 - L1MD2 LINE L1 -208 6151 5905 798 279 46 48 chr3 151228961 151229334 -76295244 + L2 LINE L2 2933 3304 -9 336 313 15 8 chr3 151229662 151229796 -76294782 + L1ME LINE L1 461 595 -5935 351 173 12 37 chr3 151229980 151230081 -76294497 + L1ME LINE L1 2577 2650 -3890 896 181 0 13 chr3 151230084 151230233 -76294345 + FRAM SINE Alu 13 159 -17 25 0 0 0 chr3 151231055 151231080 -76293498 + AT_rich Low_complexity Low_complexity 1 25 0 211 322 0 0 chr3 151231161 151231220 -76293358 - L2 LINE L2 -4 3309 3251 207 0 0 0 chr3 151231703 151231726 -76292852 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 204 318 0 0 chr3 151231836 151231899 -76292679 + L2 LINE L2 3251 3313 0 786 274 31 47 chr3 151232001 151232256 -76292322 - MIR SINE MIR 0 262 12 746 218 11 46 chr3 151232270 151232444 -76292134 - MER5A DNA MER1_type 0 189 22 2058 105 42 60 chr3 151232722 151233104 -76291474 + THE1C LTR MaLR 1 375 0 25 75 0 0 chr3 151236032 151236085 -76288493 + AT_rich Low_complexity Low_complexity 1 53 0 741 303 39 4 chr3 151236273 151236504 -76288074 + MIR SINE MIR 12 250 -12 1284 184 134 70 chr3 151236930 151237194 -76287384 + MLT1A1 LTR MaLR 1 294 -71 1570 178 0 51 chr3 151237194 151237513 -76287065 - AluJb SINE Alu 0 308 5 1284 184 134 70 chr3 151237513 151237590 -76286988 + MLT1A1 LTR MaLR 294 365 0 359 279 8 60 chr3 151238154 151238318 -76286260 + MIR SINE MIR 4 155 -55 29 47 0 0 chr3 151238958 151239001 -76285577 + AT_rich Low_complexity Low_complexity 1 43 0 232 253 291 0 chr3 151239073 151239152 -76285426 - MIR SINE MIR -109 153 52 245 202 139 81 chr3 151239672 151239845 -76284733 - MLT1J LTR MaLR -323 188 6 244 47 0 70 chr3 151239888 151239931 -76284647 - L1PA8 LINE L1 -6 6166 6127 3893 63 4 0 chr3 151239971 151240476 -76284102 - L1PA8 LINE L1 -13 6159 5653 329 315 92 0 chr3 151241597 151241727 -76282851 - MIR SINE MIR -27 235 94 183 129 0 0 chr3 151242308 151242339 -76282239 + (TA)n Simple_repeat Simple_repeat 2 32 0 722 138 53 13 chr3 151242600 151242749 -76281829 - Charlie5 DNA MER1_type -27 2585 2431 2282 153 50 70 chr3 151242749 151243196 -76281382 + MER31A LTR ERV1 1 439 -46 1592 185 0 25 chr3 151243196 151243482 -76281096 - AluJo SINE Alu -33 279 1 2282 153 50 70 chr3 151243482 151243516 -76281062 + MER31A LTR ERV1 439 472 -13 2276 82 14 0 chr3 151243518 151243810 -76280768 - AluSq SINE Alu -17 296 1 251 127 0 36 chr3 151243824 151243879 -76280699 - Charlie5 DNA MER1_type -172 2440 2388 265 171 0 0 chr3 151243902 151243943 -76280635 - Charlie5 DNA MER1_type -2563 49 9 304 320 94 8 chr3 151244397 151244525 -76280053 + L3 LINE CR1 1068 1206 -371 250 322 70 28 chr3 151244892 151245035 -76279543 + MIR SINE MIR 37 185 -77 187 200 250 0 chr3 151245765 151245825 -76278753 + MIR SINE MIR 113 187 -75 21 0 0 0 chr3 151248416 151248437 -76276141 + AT_rich Low_complexity Low_complexity 1 21 0 385 171 67 48 chr3 151248852 151248957 -76275621 - MER20B DNA MER1_type 0 783 677 320 239 60 30 chr3 151248983 151249117 -76275461 + L1MCb LINE L1 396 533 -5889 856 281 157 27 chr3 151249470 151249947 -76274631 + L1MCb LINE L1 807 1345 -5078 900 229 124 88 chr3 151250361 151250484 -76274094 - MER20B DNA MER1_type -168 615 498 1668 114 100 36 chr3 151250484 151250764 -76273814 - AluSx SINE Alu -14 298 1 900 229 124 88 chr3 151250764 151251048 -76273530 - MER20B DNA MER1_type -285 498 182 1837 147 32 35 chr3 151251048 151251361 -76273217 - AluJo SINE Alu 0 312 1 900 229 124 88 chr3 151251361 151251475 -76273103 - MER20B DNA MER1_type -601 182 74 1216 189 108 8 chr3 151252064 151252313 -76272265 + AluJo SINE Alu 17 290 -22 342 67 0 0 chr3 151256100 151256145 -76268433 + (TG)n Simple_repeat Simple_repeat 2 46 0 1922 142 0 17 chr3 151256158 151256460 -76268118 - AluJb SINE Alu -14 298 2 204 175 25 0 chr3 151256500 151256540 -76268038 + (TAA)n Simple_repeat Simple_repeat 2 42 0 395 285 100 15 chr3 151256822 151256952 -76267626 - MIR SINE MIR -55 207 67 740 168 0 8 chr3 151257515 151257634 -76266944 - FLAM_C SINE Alu -15 118 1 2061 122 0 0 chr3 151257778 151258057 -76266521 - AluSg SINE Alu -31 279 1 421 330 106 26 chr3 151258370 151258597 -76265981 + MIR SINE MIR 16 260 -2 41 21 0 0 chr3 151259327 151259375 -76265203 + AT_rich Low_complexity Low_complexity 1 48 0 740 275 88 96 chr3 151260182 151260568 -76264010 - L2 LINE L2 -1 3312 2930 885 193 40 0 chr3 151260653 151260829 -76263749 + L1MB7 LINE L1 5632 5814 -364 1116 159 84 9 chr3 151260833 151261059 -76263519 + L1MB7 LINE L1 5934 6176 -8 2237 98 0 22 chr3 151261211 151261529 -76263049 - AluSx SINE Alu -1 311 1 403 223 184 0 chr3 151261898 151262001 -76262577 - MER5C DNA MER1_type -202 122 1 244 240 67 0 chr3 151262001 151262076 -76262502 + L1ME LINE L1 5776 5855 -266 718 180 0 0 chr3 151262268 151262379 -76262199 - AluJo SINE Alu -24 288 178 892 194 24 0 chr3 151262430 151262595 -76261983 - AluJo SINE Alu -138 174 6 2470 56 10 0 chr3 151262958 151263261 -76261317 + AluY SINE Alu 3 308 -3 1298 72 6 0 chr3 151263261 151263428 -76261150 + AluY SINE Alu 133 300 -11 351 261 60 45 chr3 151264160 151264294 -76260284 + MIR SINE MIR 115 250 -12 3703 175 71 54 chr3 151265058 151265896 -76258682 - L1MB7 LINE L1 -8 6176 5266 2318 94 23 7 chr3 151265896 151266203 -76258375 - AluSx SINE Alu 0 312 1 3703 175 71 54 chr3 151266203 151266859 -76257719 - L1MB7 LINE L1 -918 5266 4623 1336 171 0 5 chr3 151266876 151267093 -76257485 + AluSg/x SINE Alu 85 300 -12 657 213 45 0 chr3 151267105 151267260 -76257318 - L1MB7 LINE L1 -1544 4602 4441 1966 149 3 0 chr3 151269000 151269288 -76255290 + AluSx SINE Alu 1 289 -23 303 192 101 50 chr3 151269404 151269503 -76255075 - MIR SINE MIR -3 259 156 1185 135 204 110 chr3 151269505 151269823 -76254755 + MER7A DNA MER2_type 1 346 0 455 259 145 0 chr3 151269827 151269958 -76254620 - MIR SINE MIR -111 151 2 352 330 132 46 chr3 151270152 151270500 -76254078 + L3 LINE CR1 1183 1560 -17 667 123 70 0 chr3 151271207 151271321 -76253257 - FLAM_C SINE Alu -11 122 1 2048 126 32 0 chr3 151272186 151272471 -76252107 - AluSq SINE Alu -13 300 7 601 156 148 0 chr3 151272918 151273046 -76251532 - MER3 DNA MER1_type -5 204 58 1145 116 77 44 chr3 151273046 151273316 -76251262 + MER1B DNA MER1_type 1 334 -5 21 82 0 0 chr3 151275430 151275479 -76249099 + AT_rich Low_complexity Low_complexity 1 49 0 25 31 0 0 chr3 151279608 151279640 -76244938 + AT_rich Low_complexity Low_complexity 1 32 0 730 149 15 30 chr3 151280206 151280340 -76244238 + FLAM_C SINE Alu 2 133 0 360 272 24 40 chr3 151281460 151281585 -76242993 - MER20 DNA MER1_type 0 219 97 1363 162 31 0 chr3 151281586 151281815 -76242763 + MER46A DNA MER2_type 1 236 0 2249 95 0 55 chr3 151283340 151283665 -76240913 - AluSx SINE Alu -5 307 1 204 293 38 57 chr3 151283868 151283974 -76240604 - MIR SINE MIR -43 219 116 1644 206 91 17 chr3 151283977 151284598 -76239980 + L1ME LINE L1 5061 5731 -435 23190 34 1 0 chr3 151284883 151287716 -76236862 + L1P LINE L1 1287 4120 -2026 1613 175 48 14 chr3 151288054 151288345 -76236233 - AluJo SINE Alu -11 301 1 1711 180 24 0 chr3 151289334 151289628 -76234950 - AluJb SINE Alu -11 301 1 719 204 143 10 chr3 151289724 151289920 -76234658 + MIR SINE MIR 4 225 -37 24 53 0 0 chr3 151291356 151291394 -76233184 + AT_rich Low_complexity Low_complexity 1 38 0 1248 149 0 11 chr3 151293856 151294044 -76230534 - AluSx SINE Alu -126 186 1 224 39 0 0 chr3 151294687 151294713 -76229865 + (T)n Simple_repeat Simple_repeat 1 26 0 1052 78 0 0 chr3 151295009 151295138 -76229440 - AluSg SINE Alu -181 129 1 1459 183 42 14 chr3 151295138 151295427 -76229151 - AluJo SINE Alu -12 300 4 26 30 0 0 chr3 151296891 151296924 -76227654 + AT_rich Low_complexity Low_complexity 1 33 0 324 340 20 0 chr3 151297226 151297326 -76227252 + L1ME LINE L1 5512 5613 -508 1749 141 0 70 chr3 151297466 151297765 -76226813 - AluSx SINE Alu -12 300 23 475 261 94 9 chr3 151297916 151298160 -76226418 - L1MDa LINE L1 -4604 1525 1326 299 91 0 23 chr3 151298165 151298209 -76226369 - tRNA-Met-e tRNA tRNA -32 43 1 758 277 44 7 chr3 151298259 151298555 -76226023 - L1MDa LINE L1 -4862 1257 951 248 273 247 20 chr3 151298559 151298709 -76225869 - MER5B DNA MER1_type -5 184 1 745 292 59 86 chr3 151298709 151299689 -76224889 - L1MDa LINE L1 -5160 959 6 1519 261 104 36 chr3 151301196 151302057 -76222521 - L2 LINE L2 -3 3310 2420 467 317 30 24 chr3 151302127 151302294 -76222284 - MER5A DNA MER1_type -9 180 13 680 210 0 151 chr3 151302767 151302860 -76221718 + MER112 DNA MER1_type 8 113 -147 213 39 0 0 chr3 151302860 151302886 -76221692 + (TGGA)n Simple_repeat Simple_repeat 4 29 0 680 210 0 151 chr3 151302886 151303063 -76221515 + MER112 DNA MER1_type 113 237 -23 9657 76 1 10 chr3 151303644 151305542 -76219036 - L1PA7 LINE L1 -2 6467 4564 2176 121 0 3 chr3 151305542 151305847 -76218731 - AluSx SINE Alu -8 304 1 9657 76 1 10 chr3 151305847 151306028 -76218550 - L1PA7 LINE L1 -1905 4564 4383 19678 37 2 0 chr3 151306075 151309255 -76215323 - L1PA4 LINE L1 -2 6153 2970 21541 106 12 14 chr3 151309255 151312899 -76211679 - L1PA7 LINE L1 -2075 4386 740 248 365 42 0 chr3 151313508 151313604 -76210974 - L3 LINE CR1 -19 1558 1459 23 54 0 0 chr3 151314107 151314144 -76210434 + AT_rich Low_complexity Low_complexity 1 37 0 1237 184 74 37 chr3 151315017 151315343 -76209235 - MER44D DNA MER2_type 0 609 2 2150 124 0 0 chr3 151316360 151316658 -76207920 + AluSq SINE Alu 1 298 -15 22 0 0 0 chr3 151317411 151317433 -76207145 + AT_rich Low_complexity Low_complexity 1 22 0 795 185 38 8 chr3 151317497 151317757 -76206821 - L1MD2 LINE L1 0 6359 6041 23 86 0 0 chr3 151319382 151319440 -76205138 + AT_rich Low_complexity Low_complexity 1 58 0 50 42 0 0 chr3 151319529 151319600 -76204978 + AT_rich Low_complexity Low_complexity 1 71 0 317 335 37 28 chr3 151319708 151319926 -76204652 + L2 LINE L2 2410 2629 -685 35 33 0 17 chr3 151319926 151319947 -76204631 + AT_rich Low_complexity Low_complexity 1 21 -38 2256 86 3 3 chr3 151319947 151320237 -76204341 - AluSg SINE Alu -20 290 1 35 33 0 17 chr3 151320237 151320275 -76204303 + AT_rich Low_complexity Low_complexity 21 59 0 826 173 0 0 chr3 151320299 151320432 -76204146 - FLAM_C SINE Alu -10 133 1 255 178 0 0 chr3 151321016 151321061 -76203517 + L2 LINE L2 3264 3308 -5 6113 76 31 0 chr3 151323038 151324043 -76200535 - L1PA13 LINE L1 -19 6144 5108 1284 285 50 30 chr3 151324054 151324570 -76200008 + L2 LINE L2 2784 3312 -1 339 359 22 23 chr3 151324639 151324832 -76199746 + L2 LINE L2 2881 3073 -199 283 341 0 0 chr3 151324888 151324976 -76199602 + L2 LINE L2 3226 3313 0 421 213 0 0 chr3 151325733 151325813 -76198765 - FLAM_C SINE Alu -36 107 28 453 325 8 0 chr3 151325815 151325935 -76198643 - L1MD2 LINE L1 -2205 5603 5483 355 263 104 68 chr3 151326120 151326458 -76198120 - L1MD2 LINE L1 -816 5330 4981 1671 215 0 7 chr3 151327548 151327855 -76196723 - AluJb SINE Alu -7 305 1 6218 76 27 17 chr3 151328090 151328916 -76195662 + L1PA14 LINE L1 4784 5628 -533 1903 117 44 13 chr3 151328916 151329214 -76195364 + AluSx SINE Alu 1 307 -5 6218 76 27 17 chr3 151329214 151329745 -76194833 + L1PA14 LINE L1 5628 6152 -9 1381 218 47 39 chr3 151330197 151330559 -76194019 - MLT1A1 LTR MaLR 0 365 1 2253 249 124 19 chr3 151331169 151331227 -76193351 + L1ME LINE L1 21 72 -6008 342 45 0 0 chr3 151331227 151331271 -76193307 + (CATA)n Simple_repeat Simple_repeat 2 45 0 2253 249 124 19 chr3 151331271 151332249 -76192329 + L1ME LINE L1 72 1130 -4950 2362 84 0 16 chr3 151332343 151332653 -76191925 - AluSq SINE Alu -8 305 1 8382 32 8 3 chr3 151332962 151334752 -76189826 - L1PA4 LINE L1 -3 6152 4358 13172 42 1 5 chr3 151334752 151336492 -76188086 + L1P LINE L1 1999 3730 -2416 389 296 28 57 chr3 151337097 151337273 -76187305 - HAL1 LINE L1 -111 2396 2226 1362 265 147 12 chr3 151337911 151338559 -76186019 - HAL1 LINE L1 -577 1930 1196 1138 202 48 55 chr3 151338703 151339124 -76185454 - L1MC5 LINE L1 -171 7790 7373 25 65 0 0 chr3 151339449 151339495 -76185083 + AT_rich Low_complexity Low_complexity 1 46 0 30 45 0 0 chr3 151340860 151340904 -76183674 + AT_rich Low_complexity Low_complexity 1 44 0 1250 73 0 0 chr3 151341236 151341387 -76183191 - AluSq/x SINE Alu -162 151 1 254 362 13 59 chr3 151341894 151342046 -76182532 + MIR3 SINE MIR 16 160 -48 400 38 0 238 chr3 151342633 151342738 -76181840 + MADE1 DNA Mariner 1 80 0 500 315 87 16 chr3 151343955 151344209 -76180369 + L3 LINE CR1 1221 1492 -85 2023 110 7 42 chr3 151344317 151344627 -76179951 + AluSx SINE Alu 1 299 -13 1431 178 29 3 chr3 151345898 151346212 -76178366 - MER33 DNA MER1_type 0 324 3 1778 96 11 4 chr3 151346287 151346547 -76178031 + L1PA8 LINE L1 5909 6170 -2 6591 147 27 9 chr3 151346588 151347806 -76176772 - L1PA13 LINE L1 -1170 4976 3737 5530 115 27 13 chr3 151347806 151348960 -76175618 + L1PA13 LINE L1 4997 6161 -2 23 33 0 0 chr3 151348977 151349007 -76175571 + AT_rich Low_complexity Low_complexity 1 30 0 241 111 0 0 chr3 151349147 151349183 -76175395 - HY5 scRNA scRNA -48 36 1 4639 193 91 19 chr3 151349414 151351216 -76173362 - L1MD1 LINE L1 0 6636 4666 1474 114 5 9 chr3 151351216 151351426 -76173152 - AluSq SINE Alu -10 303 95 4639 193 91 19 chr3 151351426 151351720 -76172858 - L1MD1 LINE L1 -1970 4666 4395 5832 190 86 43 chr3 151351754 151352186 -76172392 - L1MD1 LINE L1 -3890 2650 2238 2219 113 3 0 chr3 151352186 151352479 -76172099 + AluSx SINE Alu 1 294 -18 5832 190 86 43 chr3 151352479 151353471 -76171107 - L1MD1 LINE L1 -4302 2238 1290 1621 185 148 5 chr3 151353471 151353849 -76170729 - MSTB1 LTR MaLR 0 432 1 5832 190 86 43 chr3 151353849 151354742 -76169836 - L1MD1 LINE L1 -5250 1290 20 4651 223 103 25 chr3 151354917 151357067 -76167511 + L1ME1 LINE L1 3371 5760 -406 2201 86 10 3 chr3 151357067 151357357 -76167221 + AluSg SINE Alu 8 299 -11 4651 223 103 25 chr3 151357357 151357768 -76166810 + L1ME1 LINE L1 5760 6138 -28 237 277 24 69 chr3 151358628 151358756 -76165822 + MIR SINE MIR 47 208 -54 1505 159 43 47 chr3 151358756 151359057 -76165521 + AluJo SINE Alu 1 300 -12 237 277 24 69 chr3 151359057 151359097 -76165481 + MIR SINE MIR 208 248 -14 1433 167 12 4 chr3 151360724 151360964 -76163614 + AluJo SINE Alu 64 305 -7 758 260 220 31 chr3 151362555 151362934 -76161644 + L2 LINE L2 2590 2896 -417 2295 99 3 0 chr3 151362934 151363227 -76161351 + AluSx SINE Alu 1 294 -18 758 260 220 31 chr3 151363227 151363462 -76161116 + L2 LINE L2 2896 3313 0 1514 241 47 47 chr3 151364330 151364823 -76159755 + L2 LINE L2 2821 3313 0 2319 86 10 3 chr3 151364944 151365246 -76159332 + AluSx SINE Alu 1 304 -8 297 250 43 11 chr3 151365253 151365345 -76159233 - MER5B DNA MER1_type 0 178 84 1098 135 158 60 chr3 151365753 151366100 -76158478 - Charlie5 DNA MER1_type 0 2624 2244 395 206 7 73 chr3 151366107 151366146 -76158432 - MER3 DNA MER1_type 6 168 128 1933 152 0 0 chr3 151366146 151366436 -76158142 + AluJb SINE Alu 1 290 -22 395 206 7 73 chr3 151366436 151366532 -76158046 - MER3 DNA MER1_type -34 128 42 3258 109 111 38 chr3 151366678 151367237 -76157341 - MER4A LTR ERV1 0 600 1 1103 97 0 0 chr3 151367371 151367516 -76157062 + AluSc SINE Alu 157 301 -8 1782 168 0 20 chr3 151367750 151368054 -76156524 + AluJb SINE Alu 1 298 -14 183 350 60 0 chr3 151369439 151369539 -76155039 - L2 LINE L2 -469 2845 2740 290 276 118 29 chr3 151369588 151369758 -76154820 - L2 LINE L2 -667 2647 2463 1160 191 30 128 chr3 151369789 151370156 -76154422 - LTR28 LTR ERV1 -3 1017 687 2125 137 0 7 chr3 151370542 151370842 -76153736 + AluJb SINE Alu 1 298 -14 1092 152 17 178 chr3 151371221 151371635 -76152943 - LTR28 LTR ERV1 -292 493 102 22 80 0 0 chr3 151371764 151371814 -76152764 + AT_rich Low_complexity Low_complexity 1 50 0 870 240 180 47 chr3 151371957 151372274 -76152304 + MER41C LTR ERV1 1 274 -280 1004 47 78 0 chr3 151372274 151372403 -76152175 - MER85 DNA T2_type 0 139 1 870 240 180 47 chr3 151372403 151372573 -76152005 + MER41C LTR ERV1 274 553 -1 416 184 143 20 chr3 151372573 151372671 -76151907 + FLAM_A SINE Alu 26 135 -7 423 271 40 60 chr3 151372996 151373195 -76151383 - HAL1 LINE L1 -519 1988 1794 300 119 186 0 chr3 151373205 151373264 -76151314 + MER4D LTR ERV1 284 353 -550 913 144 20 13 chr3 151373266 151373419 -76151159 - FRAM SINE Alu -8 168 15 594 125 10 10 chr3 151373419 151373523 -76151055 + LTR49 LTR ERV1 492 595 0 779 239 177 45 chr3 151373523 151373882 -76150696 - HAL1 LINE L1 -767 1740 1430 3463 108 85 30 chr3 151373882 151374048 -76150530 - MER41B LTR ERV1 0 635 480 2246 108 0 13 chr3 151374048 151374354 -76150224 - AluSg SINE Alu -8 302 1 3463 108 85 30 chr3 151374354 151374789 -76149789 - MER41B LTR ERV1 -155 480 1 3873 118 34 25 chr3 151374789 151375434 -76149144 + MER39B LTR ERV1 3 653 0 779 239 177 45 chr3 151375434 151375829 -76148749 - HAL1 LINE L1 -1076 1431 885 922 163 84 128 chr3 151377917 151378323 -76146255 - MLT1B LTR MaLR 0 390 3 219 255 184 10 chr3 151378549 151378647 -76145931 - MIR SINE MIR -70 192 78 617 307 19 55 chr3 151379390 151379647 -76144931 + MIR SINE MIR 15 262 0 249 214 0 0 chr3 151382984 151383026 -76141552 + MER119 DNA MER1_type 2 43 -540 333 196 108 70 chr3 151383069 151383252 -76141326 - FAM SINE Alu -13 162 33 638 183 38 0 chr3 151383293 151383424 -76141154 + MER119 DNA MER1_type 448 583 0 1599 161 47 11 chr3 151384809 151385088 -76139490 - AluJo SINE Alu -22 290 2 2012 131 0 56 chr3 151385809 151386129 -76138449 + AluSx SINE Alu 1 302 -10 1867 128 88 0 chr3 151386131 151386405 -76138173 + AluSx SINE Alu 1 298 -14 2089 132 13 0 chr3 151386405 151386526 -76138052 + AluSx SINE Alu 1 119 -193 216 0 0 0 chr3 151386526 151386550 -76138028 + (TAA)n Simple_repeat Simple_repeat 2 25 0 2089 132 13 0 chr3 151386550 151386730 -76137848 + AluSx SINE Alu 119 307 -5 2433 71 0 0 chr3 151387652 151387947 -76136631 - AluY SINE Alu -16 295 1 375 261 149 90 chr3 151389144 151389332 -76135246 - L2 LINE L2 -19 3253 3055 2535 50 0 0 chr3 151389659 151389957 -76134621 - AluY SINE Alu -13 298 1 1835 165 94 2 chr3 151390106 151390512 -76134066 + L1MB5 LINE L1 5732 6174 0 213 402 60 0 chr3 151391488 151391605 -76132973 - MIR SINE MIR -137 125 2 434 278 70 0 chr3 151391833 151391948 -76132630 - MIR SINE MIR -79 183 61 1645 146 69 9 chr3 151392254 151392604 -76131974 - L1MA7 LINE L1 -25 6266 5896 274 270 20 20 chr3 151392944 151393044 -76131534 + (TA)n Simple_repeat Simple_repeat 1 100 0 2408 45 14 10 chr3 151394114 151394404 -76130174 - AluSp SINE Alu -22 291 1 532 269 102 11 chr3 151394881 151395067 -76129511 - MIR SINE MIR -1 261 59 231 197 254 14 chr3 151397326 151397397 -76127181 + L2 LINE L2 3225 3312 -1 211 407 22 0 chr3 151397758 151397849 -76126729 + L2 LINE L2 3128 3220 -52 1132 178 9 70 chr3 151398107 151398337 -76126241 - AluJo SINE Alu -87 225 10 820 249 36 0 chr3 151399126 151399318 -76125260 + MER58A DNA MER1_type 1 199 -25 1779 121 88 30 chr3 151399318 151399648 -76124930 + THE1B LTR MaLR 1 349 -15 3101 189 106 11 chr3 151399677 151400793 -76123785 + L1MB8 LINE L1 4958 6178 0 1873 141 3 17 chr3 151400807 151401106 -76123472 + AluJb SINE Alu 1 295 -17 926 27 0 0 chr3 151401293 151401404 -76123174 + L1PA4 LINE L1 6045 6155 0 181 231 19 39 chr3 151401842 151401894 -76122684 - L2 LINE L2 -605 2709 2659 * 433 276 43 9 chr3 151401853 151401969 -76122609 + MER5A DNA MER1_type 40 159 -30 769 289 65 0 chr3 151403081 151403313 -76121265 - MIR SINE MIR -5 257 11 611 182 142 7 chr3 151406172 151406320 -76118258 - AluJb SINE Alu -22 290 123 24 53 0 0 chr3 151407745 151407783 -76116795 + AT_rich Low_complexity Low_complexity 1 38 0 944 285 182 49 chr3 151407826 151408778 -76115800 - L2 LINE L2 0 3313 2216 1212 202 0 0 chr3 151408781 151409009 -76115569 + AluJb SINE Alu 85 312 0 619 289 38 14 chr3 151409009 151409220 -76115358 - L2 LINE L2 -1102 2212 1997 323 264 64 9 chr3 151410159 151410269 -76114309 + L1MC4 LINE L1 7927 8042 0 2239 117 0 3 chr3 151410392 151410700 -76113878 + AluSg SINE Alu 1 307 -3 6421 65 30 48 chr3 151412681 151414955 -76109623 + SVA Other Other 29 1386 0 23 54 0 0 chr3 151415139 151415176 -76109402 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr3 151415256 151415284 -76109294 + AT_rich Low_complexity Low_complexity 1 28 0 2560 62 0 0 chr3 151417169 151417478 -76107100 + AluY SINE Alu 1 309 -2 535 180 0 0 chr3 151418304 151418404 -76106174 + L1MB7 LINE L1 6070 6169 -15 1654 180 4 7 chr3 151422941 151423219 -76101359 + AluJo SINE Alu 1 277 -35 212 0 36 0 chr3 151423227 151423255 -76101323 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1159 109 70 70 chr3 151423402 151423632 -76100946 - MER30 DNA MER1_type 0 230 1 497 295 40 60 chr3 151425099 151425299 -76099279 + MIR SINE MIR 50 245 -17 2046 106 66 6 chr3 151425325 151425674 -76098904 - L1MB3 LINE L1 0 6183 5814 647 298 98 4 chr3 151425695 151425930 -76098648 + MIR SINE MIR 1 257 -5 227 53 0 0 chr3 151426162 151426200 -76098378 - L1MA1 LINE L1 0 6302 6265 308 231 0 15 chr3 151426279 151426344 -76098234 + MER21B LTR ERV1 5 68 -795 291 217 67 0 chr3 151426380 151426440 -76098138 + MER21B LTR ERV1 26 89 -774 277 254 56 14 chr3 151426442 151426513 -76098065 + MER21B LTR ERV1 42 115 -748 222 303 207 21 chr3 151426804 151426949 -76097629 + L2 LINE L2 2569 2740 -574 26 30 0 0 chr3 151429017 151429050 -76095528 + AT_rich Low_complexity Low_complexity 1 33 0 759 174 8 0 chr3 151429260 151429392 -76095186 + FLAM_A SINE Alu 1 133 0 12703 108 59 99 chr3 151429829 151432347 -76092231 - Tigger1 DNA MER2_type -1 2417 2 2429 94 0 0 chr3 151432931 151433239 -76091339 + AluSc SINE Alu 1 308 -1 2391 82 3 3 chr3 151433429 151433735 -76090843 + AluSp SINE Alu 1 306 -7 380 327 42 42 chr3 151434535 151434752 -76089826 - MIR SINE MIR -12 250 34 204 111 0 0 chr3 151435435 151435471 -76089107 + (CAAAAA)n Simple_repeat Simple_repeat 2 37 0 189 241 0 0 chr3 151435948 151436002 -76088576 + (TATG)n Simple_repeat Simple_repeat 2 55 0 21 0 0 0 chr3 151437763 151437784 -76086794 + AT_rich Low_complexity Low_complexity 1 21 0 429 119 0 0 chr3 151438189 151438256 -76086322 - Alu SINE Alu -8 304 238 1196 162 5 0 chr3 151438377 151438562 -76086016 - AluSx SINE Alu -126 186 1 709 220 110 0 chr3 151439195 151439377 -76085201 + MER58C DNA MER1_type 14 215 0 844 217 21 21 chr3 151439742 151439931 -76084647 + MER5A DNA MER1_type 1 189 0 2348 93 0 3 chr3 151440765 151441076 -76083502 + AluY SINE Alu 1 310 -1 25 0 0 0 chr3 151441985 151442010 -76082568 + AT_rich Low_complexity Low_complexity 1 25 0 367 302 95 6 chr3 151443632 151443811 -76080767 - MIR SINE MIR -4 258 64 306 233 47 23 chr3 151443966 151444052 -76080526 - L1M4 LINE L1 -1336 4810 4723 21 0 0 0 chr3 151446044 151446065 -76078513 + AT_rich Low_complexity Low_complexity 1 21 0 257 264 128 43 chr3 151446366 151446544 -76078034 - MIR3 SINE MIR -8 254 26 522 311 72 25 chr3 151446812 151447047 -76077531 - MIR SINE MIR -12 250 5 21 57 0 0 chr3 151447067 151447102 -76077476 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr3 151448064 151448093 -76076485 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr3 151449086 151449106 -76075472 + (CAAAA)n Simple_repeat Simple_repeat 1 20 0 180 0 0 0 chr3 151452400 151452420 -76072158 + (A)n Simple_repeat Simple_repeat 1 20 0 2318 90 0 3 chr3 151452424 151452724 -76071854 + AluSg SINE Alu 1 299 -11 253 378 14 21 chr3 151452741 151452884 -76071694 + MIR3 SINE MIR 16 157 -51 456 331 138 67 chr3 151453303 151453708 -76070870 + L2 LINE L2 2825 3258 -14 241 301 0 14 chr3 151455111 151455184 -76069394 - Charlie4 DNA MER1_type -5 1956 1885 943 273 18 24 chr3 151455478 151455812 -76068766 + L1ME4a LINE L1 5551 5882 -239 200 273 0 0 chr3 151455914 151455958 -76068620 - MIR SINE MIR -6 256 213 1759 139 17 3 chr3 151456373 151456660 -76067918 - AluJb SINE Alu -15 297 7 25 31 0 0 chr3 151457039 151457071 -76067507 + AT_rich Low_complexity Low_complexity 1 32 0 29 28 0 0 chr3 151457339 151457375 -76067203 + AT_rich Low_complexity Low_complexity 1 36 0 224 336 104 0 chr3 151457492 151457626 -76066952 - MIR3 SINE MIR -7 201 54 273 297 41 62 chr3 151457741 151457886 -76066692 + L2 LINE L2 3172 3313 0 1929 120 73 0 chr3 151458762 151459078 -76065500 + MER61C LTR ERV1 86 424 -10 480 92 0 0 chr3 151459229 151459369 -76065209 + L1PA8 LINE L1 5890 6172 0 2286 76 3 7 chr3 151460851 151461141 -76063437 - AluSx SINE Alu -23 289 1 249 292 46 0 chr3 151461654 151461719 -76062859 - L2 LINE L2 0 3272 3205 1735 173 25 3 chr3 151462477 151462760 -76061818 + AluJo SINE Alu 1 289 -23 599 82 0 0 chr3 151462760 151462845 -76061733 + L1PA5 LINE L1 6066 6150 -4 193 75 50 0 chr3 151462871 151462911 -76061667 + A-rich Low_complexity Low_complexity 2 43 0 2139 53 0 8 chr3 151463769 151464031 -76060547 - AluY SINE Alu -15 296 37 9805 28 4 0 chr3 151464171 151465341 -76059237 - L1PA4 LINE L1 -1404 4742 3568 7544 28 2 0 chr3 151465341 151466747 -76057831 + L1PA4 LINE L1 4743 6152 -3 216 103 26 0 chr3 151466754 151466808 -76057770 + A-rich Low_complexity Low_complexity 1 55 0 445 257 125 14 chr3 151466892 151467036 -76057542 - L2 LINE L2 -553 2761 2602 659 307 60 56 chr3 151467158 151467409 -76057169 + MIR SINE MIR 5 256 -6 31 44 0 0 chr3 151467527 151467572 -76057006 + AT_rich Low_complexity Low_complexity 1 45 0 200 317 10 59 chr3 151468564 151468665 -76055913 - L2 LINE L2 -1911 1403 1308 24 32 0 0 chr3 151468855 151468886 -76055692 + AT_rich Low_complexity Low_complexity 1 31 0 519 185 43 49 chr3 151469918 151470080 -76054498 + L1MD3 LINE L1 7835 7995 0 201 224 0 52 chr3 151470082 151470140 -76054438 - MIR SINE MIR -141 121 67 207 353 59 0 chr3 151470227 151470295 -76054283 - L2 LINE L2 -55 3217 3146 213 283 0 33 chr3 151471560 151471620 -76052958 + MIR SINE MIR 19 76 -132 315 121 0 0 chr3 151471645 151471703 -76052875 + (CA)n Simple_repeat Simple_repeat 1 58 0 1950 104 89 0 chr3 151471801 151472070 -76052508 - AluSg SINE Alu -17 293 1 429 266 141 0 chr3 151472318 151472446 -76052132 + MIR SINE MIR 47 192 -70 2313 70 0 3 chr3 151472944 151473230 -76051348 + AluY SINE Alu 1 285 -26 1209 98 0 0 chr3 151473243 151473417 -76051161 + (GAA)n Simple_repeat Simple_repeat 1 174 0 22 0 0 0 chr3 151476131 151476153 -76048425 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr3 151476355 151476380 -76048198 + AT_rich Low_complexity Low_complexity 1 25 0 2257 40 61 0 chr3 151477665 151477943 -76046635 - AluY SINE Alu -15 296 2 478 106 0 0 chr3 151478012 151478078 -76046500 - Alu SINE Alu -243 67 2 2704 171 49 18 chr3 151478233 151478783 -76045795 + L1MB7 LINE L1 5598 6164 -20 2233 148 19 17 chr3 151479404 151479781 -76044797 - MLT1A1 LTR MaLR -1 427 1 4012 185 27 54 chr3 151480476 151481472 -76043106 + LTR5 LTR ERVK 1 969 0 3030 273 48 13 chr3 151482404 151483348 -76041230 + L2 LINE L2 23 999 -2315 2808 88 31 3 chr3 151483349 151483735 -76040843 + THE1B-int LTR MaLR 1184 1580 0 2641 94 0 24 chr3 151483735 151484106 -76040472 + THE1B LTR MaLR 1 362 -2 619 294 48 27 chr3 151484108 151484295 -76040283 + L2 LINE L2 1004 1194 -2120 632 272 58 114 chr3 151484308 151484789 -76039789 - LTR16A1 LTR ERVL 0 457 4 3007 245 224 9 chr3 151484796 151485874 -76038704 + L2 LINE L2 1205 2514 -800 732 187 8 8 chr3 151485882 151486005 -76038573 - MER7A DNA MER2_type 0 336 214 1542 133 0 17 chr3 151486593 151486827 -76037751 - MER7A DNA MER2_type -117 229 2 770 293 158 36 chr3 151486827 151487491 -76037087 + L2 LINE L2 2533 3288 -25 1069 221 52 87 chr3 151487811 151488175 -76036403 - L1ME3A LINE L1 -315 5855 5511 2110 102 10 10 chr3 151488175 151488469 -76036109 - AluSx SINE Alu -16 296 3 1069 221 52 87 chr3 151488469 151488587 -76035991 - L1ME3A LINE L1 -659 5511 5390 983 256 190 23 chr3 151488693 151489424 -76035154 - L1ME3A LINE L1 -991 5155 4303 2153 105 24 3 chr3 151489546 151489842 -76034736 - AluSx SINE Alu -10 302 1 329 279 66 22 chr3 151489861 151489997 -76034581 - L1ME3A LINE L1 -3366 2780 2639 212 277 143 18 chr3 151490134 151490246 -76034332 - MIR SINE MIR -85 177 52 212 316 26 0 chr3 151490550 151490626 -76033952 - MIR SINE MIR -124 138 61 198 313 250 0 chr3 151490770 151490866 -76033712 - MIR3 SINE MIR -46 162 43 770 284 44 13 chr3 151492916 151493145 -76031433 + MIR SINE MIR 3 238 -24 480 223 169 0 chr3 151493175 151493305 -76031273 - MIR SINE MIR -2 260 109 207 289 252 7 chr3 151494038 151494173 -76030405 - L2 LINE L2 -22 3291 3124 304 276 81 41 chr3 151494426 151494549 -76030029 + MIR SINE MIR 18 145 -117 3707 253 161 50 chr3 151494645 151496190 -76028388 + HAL1 LINE L1 58 1892 -615 686 226 66 22 chr3 151496190 151496371 -76028207 - MER5A DNA MER1_type 0 189 1 3707 253 161 50 chr3 151496371 151496887 -76027691 + HAL1 LINE L1 1892 2349 -158 258 219 55 41 chr3 151496897 151496970 -76027608 + HAL1 LINE L1 2401 2474 -33 216 135 96 39 chr3 151497232 151497284 -76027294 + MER5B DNA MER1_type 2 56 -122 572 291 11 16 chr3 151498603 151498792 -76025786 - MER5A DNA MER1_type -1 188 1 308 273 367 0 chr3 151498805 151498933 -76025645 + MER5A DNA MER1_type 9 183 -6 259 179 89 0 chr3 151498940 151498996 -76025582 - MER5A DNA MER1_type -120 69 9 692 242 75 0 chr3 151499012 151499173 -76025405 + MER5B DNA MER1_type 1 173 -5 383 265 108 0 chr3 151499367 151499469 -76025109 - MIR SINE MIR -62 146 34 351 0 0 0 chr3 151499838 151499877 -76024701 + (TG)n Simple_repeat Simple_repeat 1 39 0 513 281 162 11 chr3 151500183 151500368 -76024210 + MIR SINE MIR 2 214 -48 1235 196 36 84 chr3 151500746 151500960 -76023618 - MER58B DNA MER1_type -2079 341 149 1669 170 10 7 chr3 151500960 151501248 -76023330 - AluJb SINE Alu -23 289 1 1235 196 36 84 chr3 151501248 151501391 -76023187 - MER58B DNA MER1_type -2271 149 1 832 169 0 7 chr3 151501713 151501849 -76022729 - FRAM SINE Alu -22 154 20 228 261 43 9 chr3 151503997 151504112 -76020466 + (TA)n Simple_repeat Simple_repeat 2 120 0 278 262 153 53 chr3 151504885 151505026 -76019552 - L1MC/D LINE L1 -2004 5804 5679 2001 164 0 0 chr3 151505026 151505325 -76019253 - AluJb SINE Alu -13 299 1 278 262 153 53 chr3 151505325 151505343 -76019235 - L1MC/D LINE L1 -2129 5679 5664 1607 167 27 37 chr3 151505343 151505643 -76018935 - AluJb SINE Alu -15 297 1 278 262 153 53 chr3 151505643 151505860 -76018718 - L1MC/D LINE L1 -2144 5664 5389 514 91 39 0 chr3 151505990 151506067 -76018511 + MADE1 DNA Mariner 1 80 0 1780 138 11 15 chr3 151506083 151506352 -76018226 + AluJb SINE Alu 1 268 -44 550 159 68 61 chr3 151506367 151506530 -76018048 + L1ME3 LINE L1 5987 6169 -1 488 254 22 0 chr3 151506564 151506698 -76017880 + MER104 DNA Tc2 19 155 -25 253 184 61 0 chr3 151506717 151506766 -76017812 - L2 LINE L2 -1 3271 3220 2274 89 0 0 chr3 151510320 151510627 -76013951 - AluSx SINE Alu 0 307 1 2120 97 0 0 chr3 151510687 151510954 -76013624 + AluSg SINE Alu 23 289 -21 473 253 200 0 chr3 151511665 151511815 -76012763 - MER5A DNA MER1_type 0 189 10 1974 103 26 7 chr3 151511899 151512198 -76012380 - AluSc SINE Alu 0 306 3 2122 131 0 13 chr3 151512933 151513245 -76011333 - AluSx SINE Alu -4 308 1 22 0 0 0 chr3 151516057 151516079 -76008499 + AT_rich Low_complexity Low_complexity 1 22 0 1396 181 0 9 chr3 151516867 151517093 -76007485 - AluJo SINE Alu -88 224 1 23 68 0 0 chr3 151517098 151517142 -76007436 + AT_rich Low_complexity Low_complexity 1 44 0 2384 75 7 0 chr3 151517447 151517740 -76006838 + AluY SINE Alu 1 295 -16 717 271 77 5 chr3 151519504 151519711 -76004867 - MER58A DNA MER1_type 0 224 3 2118 127 38 3 chr3 151519715 151520062 -76004516 + MER46B DNA MER2_type 2 235 -1 290 258 0 15 chr3 151520078 151520144 -76004434 - MIR SINE MIR -177 85 21 331 279 66 33 chr3 151521087 151521209 -76003369 + MIR SINE MIR 61 186 -76 22 0 0 0 chr3 151522626 151522648 -76001930 + AT_rich Low_complexity Low_complexity 1 22 0 1725 137 60 109 chr3 151523622 151523988 -76000590 + Tigger3(Golem) DNA MER2_type 1 3029 0 22 0 0 0 chr3 151524092 151524114 -76000464 + AT_rich Low_complexity Low_complexity 1 22 0 859 82 16 0 chr3 151524115 151524237 -76000341 - L1MB1 LINE L1 -4 6164 6041 383 159 14 0 chr3 151524240 151524309 -76000269 + AluJ/FRAM SINE Alu 232 301 -1 482 303 82 58 chr3 151524810 151525210 -75999368 + L1MEd LINE L1 41 450 -5669 2335 87 0 0 chr3 151525267 151525567 -75999011 + AluY SINE Alu 1 300 -11 403 244 135 42 chr3 151525651 151526028 -75998550 + L1M4 LINE L1 4637 5048 -1098 492 224 82 52 chr3 151526079 151526386 -75998192 + L1P5 LINE L1 5159 5460 -691 203 343 67 9 chr3 151526827 151526932 -75997646 - L2 LINE L2 -1 3271 3161 1749 157 7 13 chr3 151527321 151527620 -75996958 + AluJb SINE Alu 1 297 -15 662 154 74 56 chr3 151529469 151529631 -75994947 + MER106B DNA MER1_type 895 1059 0 2170 102 7 3 chr3 151529655 151529948 -75994630 - AluSg SINE Alu -16 294 1 2208 111 3 3 chr3 151529949 151530246 -75994332 - AluSq SINE Alu -16 297 1 508 299 44 68 chr3 151530308 151530570 -75994008 + L2 LINE L2 2243 2497 -817 2138 96 0 0 chr3 151530570 151530841 -75993737 - AluSx SINE Alu -20 292 22 508 299 44 68 chr3 151530841 151530916 -75993662 + L2 LINE L2 2497 2572 -742 209 333 38 53 chr3 151532917 151533049 -75991529 + L2 LINE L2 3180 3309 -4 2256 56 3 18 chr3 151533409 151533726 -75990852 + AluY SINE Alu 1 313 0 429 299 76 14 chr3 151534594 151534738 -75989840 + MIR SINE MIR 20 172 -90 * 818 258 78 14 chr3 151534735 151534952 -75989626 - MIR SINE MIR 0 262 32 22 35 0 0 chr3 151535018 151535047 -75989531 + AT_rich Low_complexity Low_complexity 1 29 0 1951 185 0 3 chr3 151535237 151535550 -75989028 - AluJb SINE Alu 0 312 1 25 95 0 0 chr3 151536208 151536282 -75988296 + AT_rich Low_complexity Low_complexity 1 74 0 36 62 0 0 chr3 151536814 151536878 -75987700 + AT_rich Low_complexity Low_complexity 1 64 0 817 163 52 6 chr3 151537562 151537739 -75986839 - MIR SINE MIR -30 232 53 2476 84 0 0 chr3 151537747 151538057 -75986521 + AluY SINE Alu 1 310 -1 1139 175 0 46 chr3 151538935 151539152 -75985426 + AluJo SINE Alu 86 292 -20 1423 274 73 14 chr3 151539267 151539749 -75984829 + L2 LINE L2 2464 2973 -341 2311 120 0 0 chr3 151540942 151541250 -75983328 - AluJb SINE Alu -4 308 1 367 239 55 0 chr3 151541675 151541784 -75982794 + L1MC5 LINE L1 7739 7853 -108 27 96 0 0 chr3 151542998 151543081 -75981497 + AT_rich Low_complexity Low_complexity 1 83 0 240 152 0 0 chr3 151543230 151543276 -75981302 - Alu SINE Alu -1 301 256 954 217 8 79 chr3 151544023 151544154 -75980424 - MER58A DNA MER1_type -2197 223 115 2413 93 0 0 chr3 151544154 151544455 -75980123 + AluY SINE Alu 1 301 -10 954 217 8 79 chr3 151544455 151544563 -75980015 - MER58A DNA MER1_type -2305 115 1 21 0 0 0 chr3 151545072 151545093 -75979485 + AT_rich Low_complexity Low_complexity 1 21 0 1072 206 65 18 chr3 151545741 151546018 -75978560 - MER58B DNA MER1_type -51 290 1 995 197 5 56 chr3 151546186 151546430 -75978148 + AluJo SINE Alu 82 314 0 21 36 0 0 chr3 151546696 151546724 -75977854 + AT_rich Low_complexity Low_complexity 1 28 0 756 170 7 7 chr3 151547531 151547672 -75976906 + MER2 DNA MER2_type 1 141 -204 842 117 216 0 chr3 151547685 151547847 -75976731 - MER30 DNA MER1_type -33 197 1 465 90 13 0 chr3 151547847 151547925 -75976653 + MER2 DNA MER2_type 132 210 -135 200 109 0 43 chr3 151547926 151547972 -75976606 + (TTTTTA)n Simple_repeat Simple_repeat 2 45 0 22 35 0 0 chr3 151548967 151548996 -75975582 + AT_rich Low_complexity Low_complexity 1 29 0 2426 73 10 0 chr3 151549422 151549723 -75974855 - AluSc SINE Alu -5 304 1 791 261 154 39 chr3 151550156 151550493 -75974085 + MLT1J LTR MaLR 5 380 -131 202 355 45 9 chr3 151550859 151550969 -75973609 - L3b LINE CR1 -286 1297 1184 264 300 0 22 chr3 151551017 151551107 -75973471 - MER20B DNA MER1_type -619 164 77 222 37 0 0 chr3 151551563 151551590 -75972988 + (TA)n Simple_repeat Simple_repeat 2 28 0 323 241 23 35 chr3 151551878 151551965 -75972613 + L2 LINE L2 3186 3271 -1 228 35 0 0 chr3 151552324 151552353 -75972225 + (CAA)n Simple_repeat Simple_repeat 2 30 0 2512 61 0 0 chr3 151552593 151552888 -75971690 - AluSx SINE Alu -17 295 1 669 152 152 14 chr3 151553327 151553472 -75971106 + FRAM SINE Alu 2 166 0 29 78 0 0 chr3 151553821 151553885 -75970693 + GC_rich Low_complexity Low_complexity 1 64 0 265 203 51 0 chr3 151554074 151554153 -75970425 + (CGGAA)n Simple_repeat Simple_repeat 1 83 0 397 159 83 19 chr3 151554198 151554355 -75970223 + (CGGGG)n Simple_repeat Simple_repeat 5 171 0 463 206 56 56 chr3 151554380 151554560 -75970018 + (CGGGG)n Simple_repeat Simple_repeat 1 180 0 180 143 0 0 chr3 151554886 151554914 -75969664 - L2 LINE L2 -15 3257 3230 311 151 58 81 chr3 151555001 151555087 -75969491 - LTR65 LTR ERV1 -14 655 572 1699 43 19 5 chr3 151555716 151555924 -75968654 + AluY SINE Alu 86 296 -15 905 192 0 17 chr3 151556117 151556289 -75968289 - MER45A DNA AcHobo -6 172 4 1605 237 54 22 chr3 151556290 151556760 -75967818 + MLT1H1 LTR MaLR 58 497 -8 2278 71 3 7 chr3 151556815 151557110 -75967468 - AluSg SINE Alu -16 294 1 187 192 0 58 chr3 151557223 151557275 -75967303 - MER5A DNA MER1_type -105 84 36 468 268 183 7 chr3 151557343 151557496 -75967082 + MER5A DNA MER1_type 9 188 -1 830 213 0 33 chr3 151557506 151557689 -75966889 + MER5B DNA MER1_type 2 178 0 945 208 94 0 chr3 151558357 151558559 -75966019 - MER58A DNA MER1_type -3 221 1 377 313 71 15 chr3 151558568 151558735 -75965843 + MER5B DNA MER1_type 2 188 -1 1928 130 10 16 chr3 151559951 151560259 -75964319 + AluJb SINE Alu 1 306 -6 360 248 59 10 chr3 151560748 151560849 -75963729 + MIR SINE MIR 91 196 -66 4741 129 32 25 chr3 151561238 151562075 -75962503 - L1MA8 LINE L1 -3 6288 5446 2356 140 122 5 chr3 151562138 151562581 -75961997 + LTR44 LTR ERV1 25 519 0 1504 159 70 48 chr3 151564030 151564388 -75960190 + LTR49-int LTR ERV1 2741 3106 -3225 * 2005 179 25 44 chr3 151564382 151564907 -75959671 + LTR49-int LTR ERV1 1229 1743 -6377 21 0 0 0 chr3 151564923 151564944 -75959634 + AT_rich Low_complexity Low_complexity 1 21 0 1443 167 13 47 chr3 151564944 151565524 -75959054 + LTR49-int LTR ERV1 1720 2447 -4311 299 152 209 0 chr3 151565525 151565630 -75958948 + LTR49-int LTR ERV1 3895 4021 -2577 * 6475 165 51 30 chr3 151565598 151567351 -75957227 + LTR49-int LTR ERV1 2638 5679 -563 2114 133 121 79 chr3 151567613 151568109 -75956469 + LTR44 LTR ERV1 3 519 0 3898 149 36 64 chr3 151568110 151568439 -75956139 - L1MA8 LINE L1 -723 5448 5112 184 29 29 29 chr3 151568439 151568473 -75956105 + (TTTTG)n Simple_repeat Simple_repeat 5 38 0 3898 149 36 64 chr3 151568473 151569165 -75955413 - L1MA8 LINE L1 -1059 5112 4472 1989 122 138 26 chr3 151569434 151569819 -75954759 - MSTA LTR MaLR 0 428 1 470 235 16 112 chr3 151570586 151570774 -75953804 + MIR SINE MIR 36 200 -62 297 181 35 18 chr3 151572249 151572420 -75952158 + (TA)n Simple_repeat Simple_repeat 2 175 0 473 344 40 12 chr3 151572422 151572675 -75951903 - L1MEd LINE L1 -4233 2077 1818 36685 82 4 7 chr3 151572815 151578977 -75945601 - L1PA6 LINE L1 0 6154 11 627 273 57 49 chr3 151578986 151579159 -75945419 - L1MEd LINE L1 -4646 1664 1494 2220 122 0 0 chr3 151579159 151579454 -75945124 - AluSx SINE Alu -17 295 1 627 273 57 49 chr3 151579454 151579826 -75944752 - L1MEd LINE L1 -4816 1494 1076 29 28 0 0 chr3 151580599 151580635 -75943943 + AT_rich Low_complexity Low_complexity 1 36 0 1463 214 172 14 chr3 151580791 151580880 -75943698 - L1ME2 LINE L1 -5 6159 6085 1112 206 90 61 chr3 151580880 151581259 -75943319 + MLT1B LTR MaLR 1 390 0 1463 214 172 14 chr3 151581259 151581939 -75942639 - L1ME2 LINE L1 -79 6085 5196 518 269 15 15 chr3 151582014 151582211 -75942367 - L1ME2 LINE L1 -960 5186 4990 1202 281 51 24 chr3 151582214 151582821 -75941757 - L1ME4a LINE L1 -193 5928 5304 218 320 152 24 chr3 151583635 151583760 -75940818 - MIR3 SINE MIR 0 208 68 2200 94 0 0 chr3 151583762 151584038 -75940540 + AluSc SINE Alu 8 283 -26 249 33 0 0 chr3 151585178 151585208 -75939370 + (TTTC)n Simple_repeat Simple_repeat 3 32 0 322 16 0 0 chr3 151586388 151586434 -75938144 + AluY SINE Alu 2 41 -260 250 284 22 75 chr3 151586537 151586671 -75937907 + MIR SINE MIR 136 262 0 186 133 0 0 chr3 151586698 151586728 -75937850 + (TG)n Simple_repeat Simple_repeat 2 31 0 27 62 0 0 chr3 151586880 151586928 -75937650 + AT_rich Low_complexity Low_complexity 1 48 0 764 338 82 52 chr3 151587555 151588492 -75936086 - L2 LINE L2 0 3272 2264 1831 174 0 0 chr3 151589893 151590191 -75934387 + AluJb SINE Alu 12 309 -3 21 36 0 0 chr3 151590458 151590486 -75934092 + AT_rich Low_complexity Low_complexity 1 28 0 32 43 0 0 chr3 151591572 151591618 -75932960 + AT_rich Low_complexity Low_complexity 1 46 0 217 299 305 6 chr3 151591620 151591784 -75932794 + MIR SINE MIR 5 217 -45 1273 267 35 0 chr3 151591884 151592195 -75932383 + L2 LINE L2 2155 2476 -838 7177 36 55 15 chr3 151592432 151593454 -75931124 - L1PA2 LINE L1 -4 6151 5120 8125 59 110 6 chr3 151593579 151594772 -75929806 - L1P LINE L1 -4827 1319 3 571 244 88 46 chr3 151595601 151595839 -75928739 - MER112 DNA MER1_type -12 248 1 1875 169 120 47 chr3 151596257 151596742 -75927836 + MLT2B1 LTR ERVL 1 520 0 1746 150 38 41 chr3 151597710 151598051 -75926527 - MER2 DNA MER2_type -2 342 3 1504 254 129 4 chr3 151598633 151599137 -75925441 - L2 LINE L2 -844 2470 1904 11137 125 13 38 chr3 151599146 151601857 -75922721 + L1P3 LINE L1 9 2708 -3753 38535 38 32 1 chr3 151601958 151606986 -75917592 - L1P LINE L1 -964 5182 3 420 184 6 184 chr3 151606996 151607057 -75917521 + L2 LINE L2 3167 3237 -76 6408 79 7 11 chr3 151607057 151607788 -75916790 - L1PA13 LINE L1 0 6163 5431 1951 127 52 0 chr3 151607788 151608079 -75916499 - AluSx SINE Alu -6 306 1 6408 79 7 11 chr3 151608079 151609346 -75915232 - L1PA13 LINE L1 -732 5431 4179 420 184 6 184 chr3 151609346 151609463 -75915115 + L2 LINE L2 3237 3313 0 252 221 29 15 chr3 151609476 151609544 -75915034 - MIR SINE MIR -121 141 73 203 347 0 20 chr3 151609877 151609975 -75914603 + CT-rich Low_complexity Low_complexity 3 98 0 2767 212 92 10 chr3 151610154 151611161 -75913417 + L1ME3 LINE L1 5068 6161 -1 1619 237 26 33 chr3 151611190 151611680 -75912898 + L1ME1 LINE L1 5675 6161 -5 880 203 153 17 chr3 151611915 151612471 -75912107 - LTR50 LTR ERVL -1 794 25 445 287 53 27 chr3 151612479 151612629 -75911949 + MIR SINE MIR 40 193 -69 1637 215 90 31 chr3 151613330 151613818 -75910760 - MLT2B1 LTR ERVL -3 517 1 436 215 11 11 chr3 151614126 151614219 -75910359 + MIR SINE MIR 51 143 -65 298 311 6 12 chr3 151614500 151614519 -75910059 - L1MA10 LINE L1 0 6334 6316 1924 228 135 10 chr3 151614519 151615134 -75909444 - L1ME2 LINE L1 -9 6155 5464 231 36 0 0 chr3 151615160 151615188 -75909390 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 1378 108 14 5 chr3 151616143 151616357 -75908221 - L1MA2 LINE L1 0 6304 6089 825 117 21 0 chr3 151616357 151616502 -75908076 + L1MA1 LINE L1 5915 6062 -240 1805 140 0 0 chr3 151616526 151616783 -75907795 + AluSx SINE Alu 40 296 -16 3746 170 32 53 chr3 151617040 151617841 -75906737 - L1MB8 LINE L1 -1 6177 5400 2138 100 21 15 chr3 151617841 151618181 -75906397 - L1MA1 LINE L1 0 6302 5961 3746 170 32 53 chr3 151618181 151618326 -75906252 - L1MB8 LINE L1 -778 5400 5253 375 361 16 6 chr3 151618396 151618579 -75905999 - MIR3 SINE MIR -6 202 18 332 169 62 0 chr3 151618745 151618810 -75905768 - MER5A DNA MER1_type -2 187 119 1083 178 11 5 chr3 151618991 151619176 -75905402 - MER5A DNA MER1_type -3 186 1 2105 143 0 3 chr3 151619464 151619806 -75904772 + MER47A DNA MER2_type 26 366 0 212 297 0 16 chr3 151619959 151620023 -75904555 + L2 LINE L2 3210 3272 0 25 0 0 0 chr3 151620539 151620564 -75904014 + AT_rich Low_complexity Low_complexity 1 25 0 201 351 40 0 chr3 151620628 151620702 -75903876 + MIR SINE MIR 13 89 -173 940 286 29 0 chr3 151620783 151621056 -75903522 + LTR16A LTR ERVL 170 450 0 247 315 141 47 chr3 151621056 151621205 -75903373 + MIR SINE MIR 85 247 -15 1976 67 15 11 chr3 151621626 151621896 -75902682 + L1PA8 LINE L1 5898 6168 -4 771 241 46 34 chr3 151622310 151622547 -75902031 + MLT1J LTR MaLR 23 262 -249 488 272 131 19 chr3 151622683 151622889 -75901689 - MIR SINE MIR -14 248 20 2114 131 0 0 chr3 151622900 151623197 -75901381 - AluSx SINE Alu -15 297 1 886 172 101 0 chr3 151624160 151624329 -75900249 - MER5A DNA MER1_type 0 189 4 3359 164 37 13 chr3 151624376 151624407 -75900171 - L1PA16 LINE L1 -6 6160 6131 1508 112 0 0 chr3 151624407 151624613 -75899965 - AluSg/x SINE Alu -10 300 95 3359 164 37 13 chr3 151624613 151624731 -75899847 - L1PA16 LINE L1 -35 6131 6017 207 0 0 0 chr3 151624731 151624754 -75899824 + (TCCC)n Simple_repeat Simple_repeat 2 24 0 3359 164 37 13 chr3 151624754 151625274 -75899304 - L1PA16 LINE L1 -149 6017 5474 2415 87 36 0 chr3 151625498 151625831 -75898747 - L1PA13 LINE L1 -10 6153 5809 4972 162 29 95 chr3 151625831 151627029 -75897549 - L1PA16 LINE L1 -665 5501 4226 716 169 25 0 chr3 151627029 151627147 -75897431 + FRAM SINE Alu 24 144 -32 621 49 0 0 chr3 151627147 151627228 -75897350 + (GAAA)n Simple_repeat Simple_repeat 4 84 0 4972 162 29 95 chr3 151627228 151627470 -75897108 - L1PA16 LINE L1 -1939 4227 4084 1833 151 0 0 chr3 151627470 151627742 -75896836 - AluSx SINE Alu -6 306 35 4972 162 29 95 chr3 151627742 151627934 -75896644 - L1PA16 LINE L1 -2082 4084 3881 194 324 40 14 chr3 151628020 151628094 -75896484 + L2 LINE L2 3187 3262 -10 1467 213 67 3 chr3 151628102 151628445 -75896133 + MLT1A1 LTR MaLR 1 365 0 279 51 0 0 chr3 151629174 151629213 -75895365 + L1MA2 LINE L1 6256 6294 -10 1129 208 39 41 chr3 151629227 151629351 -75895227 + MLT1A2 LTR MaLR 1 124 -250 2451 55 3 0 chr3 151629351 151629641 -75894937 + AluY SINE Alu 1 291 -20 1129 208 39 41 chr3 151629641 151629863 -75894715 + MLT1A2 LTR MaLR 124 342 -32 342 0 0 0 chr3 151629863 151629901 -75894677 + (TG)n Simple_repeat Simple_repeat 2 39 0 330 26 0 0 chr3 151630182 151630221 -75894357 + (TCTA)n Simple_repeat Simple_repeat 3 41 0 1069 140 0 6 chr3 151630222 151630379 -75894199 - AluJb SINE Alu -22 290 135 395 303 101 13 chr3 151630516 151630744 -75893834 + MIR SINE MIR 15 262 0 571 356 34 25 chr3 151631166 151631829 -75892749 + L2 LINE L2 2521 3192 -121 1086 223 88 55 chr3 151632128 151632513 -75892065 - MLT1J2 LTR MaLR -26 424 27 262 271 206 9 chr3 151632936 151633043 -75891535 + L2 LINE L2 3145 3272 0 221 79 79 0 chr3 151633339 151633377 -75891201 + L2 LINE L2 3226 3266 -6 233 297 0 0 chr3 151633886 151633950 -75890628 + MLT1J LTR MaLR 110 173 -338 2002 195 15 10 chr3 151634015 151634437 -75890141 - MSTB LTR MaLR 0 411 1 453 176 42 115 chr3 151634745 151634910 -75889668 + L1M4 LINE L1 4671 4823 -1323 208 275 14 43 chr3 151635367 151635436 -75889142 + L2 LINE L2 2695 2761 -553 2425 96 0 0 chr3 151635557 151635859 -75888719 + AluSx SINE Alu 3 304 -8 10929 28 0 1 chr3 151636040 151638113 -75886465 - L1PA4 LINE L1 0 6155 4085 13910 31 2 1 chr3 151638113 151639897 -75884681 + L1PA4 LINE L1 2297 4083 -2063 235 294 101 0 chr3 151639980 151640089 -75884489 - MER94 DNA DNA -13 121 2 678 168 134 7 chr3 151640428 151640577 -75884001 - MER3 DNA MER1_type -41 168 1 791 192 169 20 chr3 151640584 151640839 -75883739 + L1MD3 LINE L1 7693 7985 -10 363 269 140 88 chr3 151640919 151641020 -75883558 - MER5A DNA MER1_type 0 189 74 1620 167 4 15 chr3 151641020 151641290 -75883288 - AluJo SINE Alu -4 308 42 363 269 140 88 chr3 151641290 151641359 -75883219 - MER5A DNA MER1_type -115 74 10 380 352 60 48 chr3 151642012 151642466 -75882112 - L1MEd LINE L1 -5314 805 347 225 0 0 0 chr3 151642662 151642687 -75881891 + (T)n Simple_repeat Simple_repeat 1 25 0 499 296 28 5 chr3 151643047 151643263 -75881315 - L1ME LINE L1 -320 5801 5581 2454 52 0 26 chr3 151643447 151643754 -75880824 - AluY SINE Alu -12 299 1 187 238 0 0 chr3 151643975 151644017 -75880561 - L3 LINE CR1 -2 1575 1534 381 323 47 8 chr3 151644814 151644941 -75879637 - MIR3 SINE MIR -40 168 37 723 188 8 0 chr3 151645929 151646057 -75878521 + MER5B DNA MER1_type 2 130 -48 899 137 0 0 chr3 151646073 151646197 -75878381 - FLAM_C SINE Alu -19 124 1 385 319 34 0 chr3 151646268 151646387 -75878191 + L2 LINE L2 3150 3272 0 466 274 45 6 chr3 151646772 151646929 -75877649 + L2 LINE L2 2802 2964 -350 349 183 85 12 chr3 151646940 151647022 -75877556 - MLT1H LTR MaLR -460 89 2 16905 18 0 0 chr3 151647423 151650268 -75874310 - L1HS LINE L1 0 6155 3311 446 43 0 0 chr3 151650267 151650337 -75874241 + L1HS LINE L1 3237 3306 -2840 * 790 194 26 11 chr3 151650374 151650565 -75874013 - L1M4 LINE L1 -1260 4886 4693 238 186 103 52 chr3 151650568 151650665 -75873913 - L1M4 LINE L1 -1643 4503 4402 2571 131 32 77 chr3 151650711 151651043 -75873535 - L1MB3 LINE L1 -9 6174 5876 2285 119 3 3 chr3 151651043 151651354 -75873224 - AluSx SINE Alu -1 311 1 2571 131 32 77 chr3 151651354 151651579 -75872999 - L1MB3 LINE L1 -307 5876 5642 1274 239 60 9 chr3 151651627 151651918 -75872660 + MLT2B2 LTR ERVL 168 479 -36 668 74 11 0 chr3 151651918 151652013 -75872565 + (TCTA)n Simple_repeat Simple_repeat 3 98 0 1274 239 60 9 chr3 151652013 151652052 -75872526 + MLT2B2 LTR ERVL 479 515 0 454 57 45 11 chr3 151652349 151652437 -75872141 + (TA)n Simple_repeat Simple_repeat 1 91 0 845 277 46 7 chr3 151652437 151652722 -75871856 - MLT1L LTR MaLR -151 464 169 1001 82 0 7 chr3 151652722 151652868 -75871710 + (TTTTC)n Simple_repeat Simple_repeat 4 148 0 1581 200 4 11 chr3 151652878 151653158 -75871420 - AluJo SINE Alu -34 278 1 356 338 128 26 chr3 151653466 151653870 -75870708 + L2 LINE L2 2678 3119 -153 295 343 0 0 chr3 151653932 151654037 -75870541 - MER117 DNA MER1_type -1 196 92 1166 145 45 0 chr3 151654747 151654947 -75869631 - MER3 DNA MER1_type 0 209 1 21 0 0 0 chr3 151655639 151655660 -75868918 + AT_rich Low_complexity Low_complexity 1 21 0 254 292 84 22 chr3 151655930 151656055 -75868523 + MIR SINE MIR 18 145 -63 947 207 16 69 chr3 151656149 151656453 -75868125 - L1ME2 LINE L1 -2 6162 5875 251 280 91 61 chr3 151656574 151656743 -75867835 + MIR SINE MIR 23 207 -55 432 302 111 12 chr3 151656950 151657122 -75867456 - MIR SINE MIR -56 206 18 2725 266 61 25 chr3 151657378 151658497 -75866081 - L2 LINE L2 -24 3289 2151 1162 255 68 78 chr3 151659125 151659724 -75864854 - MLT1G1 LTR MaLR 0 595 3 206 154 0 26 chr3 151661086 151661125 -75863453 + A-rich Low_complexity Low_complexity 5 42 0 519 305 32 58 chr3 151661328 151661636 -75862942 + MLT1I LTR MaLR 91 390 -19 433 298 22 28 chr3 151663899 151664080 -75860498 + LTR16C LTR ERVL 312 491 0 5963 106 19 21 chr3 151665939 151666311 -75858267 - L1PB1 LINE L1 -1 6150 5779 660 87 0 0 chr3 151666311 151666403 -75858175 + (TG)n Simple_repeat Simple_repeat 2 93 0 5963 106 19 21 chr3 151666403 151667163 -75857415 - L1PB1 LINE L1 -372 5779 5018 1828 178 25 8 chr3 151667162 151667560 -75857018 + L1PB1 LINE L1 4613 5017 -1129 * 805 257 65 16 chr3 151667789 151668034 -75856544 + MIR SINE MIR 6 262 0 395 297 80 5 chr3 151668283 151668564 -75856014 + MLT1I LTR MaLR 33 360 -49 24 32 0 0 chr3 151668800 151668831 -75855747 + AT_rich Low_complexity Low_complexity 1 31 0 1932 167 10 52 chr3 151669646 151670053 -75854525 - MLT1B LTR MaLR 0 390 1 387 183 14 0 chr3 151670208 151670279 -75854299 - MER58B DNA MER1_type -4 337 266 1989 159 0 6 chr3 151670601 151670915 -75853663 - AluJb SINE Alu 0 312 1 323 328 94 0 chr3 151670991 151671119 -75853459 - MER20B DNA MER1_type -601 182 43 634 225 55 33 chr3 151671421 151671603 -75852975 - MER3 DNA MER1_type -10 199 14 1539 22 6 0 chr3 151672055 151672236 -75852342 + L1PA3 LINE L1 5974 6155 0 446 332 118 0 chr3 151672713 151672924 -75851654 - MIR SINE MIR -2 260 25 2201 123 0 3 chr3 151673259 151673561 -75851017 - AluSx SINE Alu -11 301 1 542 258 54 6 chr3 151674487 151674654 -75849924 - MER5B DNA MER1_type -1 177 3 1046 187 11 0 chr3 151674655 151674837 -75849741 + MER5A DNA MER1_type 6 189 0 184 323 0 16 chr3 151675310 151675372 -75849206 + L3 LINE CR1 949 1009 -568 197 376 134 7 chr3 151675418 151675567 -75849011 + L2 LINE L2 3104 3271 -1 271 336 57 16 chr3 151676888 151677010 -75847568 + L2 LINE L2 2885 3011 -261 1480 146 19 63 chr3 151677013 151677257 -75847321 + MER4A LTR ERV1 1 225 -439 2703 26 0 7 chr3 151677257 151677564 -75847014 - AluY SINE Alu -6 305 1 1480 146 19 63 chr3 151677564 151677681 -75846897 + MER4A LTR ERV1 225 346 -318 239 70 12 209 chr3 151677663 151677749 -75846829 + MER4A LTR ERV1 286 354 -310 * 396 164 313 8 chr3 151677812 151677946 -75846632 + MER4C LTR ERV1 291 465 0 1089 202 15 0 chr3 151678055 151678253 -75846325 + MIR SINE MIR 3 203 -59 24 32 0 0 chr3 151678405 151678436 -75846142 + AT_rich Low_complexity Low_complexity 1 31 0 1128 197 15 0 chr3 151678948 151679151 -75845427 + MER58A DNA MER1_type 10 215 -9 430 333 38 0 chr3 151679228 151679360 -75845218 + L2 LINE L2 3134 3270 -2 563 268 105 7 chr3 151679816 151679969 -75844609 - MER5B DNA MER1_type -3 175 8 288 190 0 0 chr3 151679998 151680052 -75844526 + Alu SINE Alu 1 49 -250 1556 205 7 10 chr3 151680052 151680170 -75844408 + AluJo SINE Alu 5 122 -190 378 0 0 0 chr3 151680170 151680212 -75844366 + (TAA)n Simple_repeat Simple_repeat 2 43 0 1556 205 7 10 chr3 151680212 151680400 -75844178 + AluJo SINE Alu 122 310 -2 447 124 45 45 chr3 151680424 151680513 -75844065 + MER89 LTR ERV1 1 89 -470 * 1569 184 86 6 chr3 151680486 151680822 -75843756 + MER89 LTR ERV1 197 559 0 1489 64 0 0 chr3 151682738 151682925 -75841653 - L1PA6 LINE L1 -10 6144 5958 207 0 0 0 chr3 151682972 151682995 -75841583 + (TAA)n Simple_repeat Simple_repeat 2 24 0 462 291 20 20 chr3 151683278 151683426 -75841152 - L2 LINE L2 -195 3077 2930 527 352 81 26 chr3 151683863 151684207 -75840371 - L2 LINE L2 -444 2870 2508 776 179 19 106 chr3 151684594 151684801 -75839777 + MER5A DNA MER1_type 1 189 0 399 326 47 17 chr3 151684802 151684974 -75839604 - MIR SINE MIR -57 205 29 831 231 29 19 chr3 151685172 151685380 -75839198 - MER63A DNA MER1_type 0 210 1 386 227 71 92 chr3 151686051 151686083 -75838495 - MIR3 SINE MIR -1 207 176 844 171 0 75 chr3 151686083 151686270 -75838308 + MER5B DNA MER1_type 2 174 -4 386 227 71 92 chr3 151686270 151686378 -75838200 - MIR3 SINE MIR -32 176 70 2319 131 19 80 chr3 151686389 151686443 -75838135 + MER65A LTR ERV1 1 57 -388 1867 158 14 3 chr3 151686443 151686734 -75837844 + AluJo SINE Alu 1 294 -18 2319 131 19 80 chr3 151686734 151686894 -75837684 + MER65A LTR ERV1 57 225 -220 3097 86 25 16 chr3 151686894 151686937 -75837641 - MLT2A1 LTR ERVL 0 444 403 315 0 0 0 chr3 151686937 151686972 -75837606 + (TG)n Simple_repeat Simple_repeat 2 36 0 3097 86 25 16 chr3 151686972 151687368 -75837210 - MLT2A1 LTR ERVL -41 403 1 2319 131 19 80 chr3 151687368 151687626 -75836952 + MER65A LTR ERV1 225 445 0 265 254 46 81 chr3 151687800 151687973 -75836605 + L2 LINE L2 3072 3238 -75 302 224 0 30 chr3 151687978 151688045 -75836533 - L2 LINE L2 0 3313 3249 272 186 0 0 chr3 151688041 151688084 -75836494 + L2 LINE L2 3215 3257 -15 * 632 159 303 0 chr3 151688155 151688300 -75836278 + MER5A DNA MER1_type 1 189 0 219 36 0 0 chr3 151689264 151689292 -75835286 + (GA)n Simple_repeat Simple_repeat 1 28 0 185 365 24 90 chr3 151689698 151689865 -75834713 + L2 LINE L2 3028 3183 -89 13633 171 29 7 chr3 151689923 151695897 -75828681 - L1PB1 LINE L1 0 6867 620 946 166 31 5 chr3 151695877 151696070 -75828508 - L1PB1 LINE L1 -6663 200 3 * 22 56 0 0 chr3 151696408 151696444 -75828134 + AT_rich Low_complexity Low_complexity 1 36 0 231 305 95 45 chr3 151697506 151697706 -75826872 + L2 LINE L2 1837 2046 -1268 1643 141 17 0 chr3 151698067 151698357 -75826221 + L1MB3 LINE L1 5717 6011 -172 2542 147 13 4 chr3 151698423 151698879 -75825699 - L1MB3 LINE L1 -7 6176 5717 1029 199 59 108 chr3 151698958 151699329 -75825249 + LTR47B LTR ERVL 6 358 -85 508 186 17 0 chr3 151699475 151699593 -75824985 - L1MA7 LINE L1 -10 6281 6162 227 389 40 0 chr3 151700452 151700578 -75824000 + L2 LINE L2 3142 3272 0 266 227 202 25 chr3 151700975 151701094 -75823484 - MIR SINE MIR -17 245 106 323 96 19 0 chr3 151701234 151701286 -75823292 + (TG)n Simple_repeat Simple_repeat 2 54 0 21 0 0 0 chr3 151701310 151701331 -75823247 + AT_rich Low_complexity Low_complexity 1 21 0 2636 197 58 77 chr3 151701365 151701754 -75822824 - L1ME1 LINE L1 -53 6507 6112 2039 203 31 45 chr3 151701754 151702266 -75822312 + MLT1D LTR MaLR 1 505 0 2636 197 58 77 chr3 151702266 151702364 -75822214 - L1ME1 LINE L1 -448 6112 6014 2419 77 0 7 chr3 151702364 151702662 -75821916 - AluY SINE Alu -15 296 1 2636 197 58 77 chr3 151702662 151703068 -75821510 - L1ME1 LINE L1 -546 6014 5631 * 3736 223 52 42 chr3 151703067 151703683 -75820895 - L1ME1 LINE L1 -1263 5277 4668 429 37 0 0 chr3 151703683 151703737 -75820841 - L1PA5 LINE L1 -2 6152 6099 3736 223 52 42 chr3 151703737 151704467 -75820111 - L1ME1 LINE L1 -1872 4668 3918 290 240 0 41 chr3 151704582 151704703 -75819875 - L1ME1 LINE L1 -2630 3910 3795 368 184 0 0 chr3 151704705 151704792 -75819786 - L1ME1 LINE L1 -5158 1382 1296 348 367 50 68 chr3 151704874 151705212 -75819366 - L1ME1 LINE L1 -6192 348 17 462 248 55 71 chr3 151705520 151705774 -75818804 + MLT1K LTR MaLR 329 578 -10 461 148 11 11 chr3 151706322 151706410 -75818168 + MLT1H1 LTR MaLR 468 555 0 455 207 35 0 chr3 151707580 151707696 -75816882 - L1ME4a LINE L1 -21 6100 5981 183 235 0 0 chr3 151707744 151707795 -75816783 + (TA)n Simple_repeat Simple_repeat 2 52 0 195 129 0 0 chr3 151707801 151707832 -75816746 + (TG)n Simple_repeat Simple_repeat 1 31 0 871 141 0 30 chr3 151708138 151708273 -75816305 + AluJo SINE Alu 83 213 -99 461 296 37 21 chr3 151708658 151708847 -75815731 + MIR SINE MIR 33 224 -38 1656 81 4 4 chr3 151708853 151709088 -75815490 + MLT2A1 LTR ERVL 1 235 -209 207 0 0 0 chr3 151709113 151709136 -75815442 + (TA)n Simple_repeat Simple_repeat 1 23 0 260 0 111 0 chr3 151709136 151709172 -75815406 + MLT2A1 LTR ERVL 405 444 0 * 384 123 5 5 chr3 151709172 151709237 -75815341 + MLT2A1 LTR ERVL 392 444 0 1015 198 40 5 chr3 151709598 151709800 -75814778 - MER58A DNA MER1_type -15 209 1 48 32 0 0 chr3 151709883 151709945 -75814633 + AT_rich Low_complexity Low_complexity 1 62 0 1354 102 64 86 chr3 151711223 151711536 -75813042 + L1MA8 LINE L1 5982 6287 -4 2242 117 0 0 chr3 151711633 151711942 -75812636 + AluSx SINE Alu 3 311 -1 576 278 47 11 chr3 151711998 151712189 -75812389 + MIR SINE MIR 65 262 0 1513 144 19 4 chr3 151712730 151713000 -75811578 - L1MA5A LINE L1 -3 6294 6021 980 255 148 21 chr3 151713191 151713622 -75810956 + MLT1L LTR MaLR 126 611 -4 414 186 93 12 chr3 151713631 151713717 -75810861 + L2 LINE L2 3180 3272 0 1303 219 105 7 chr3 151714586 151714971 -75809607 + L1ME3A LINE L1 5721 6067 -103 315 0 0 0 chr3 151714971 151715006 -75809572 + (TC)n Simple_repeat Simple_repeat 2 36 0 261 0 0 0 chr3 151715005 151715034 -75809544 + (TA)n Simple_repeat Simple_repeat 1 29 0 1303 219 105 7 chr3 151715006 151715033 -75809545 + L1ME3A LINE L1 6067 6090 -80 237 65 0 0 chr3 151715033 151715064 -75809514 + (TG)n Simple_repeat Simple_repeat 2 32 0 1303 219 105 7 chr3 151715064 151715088 -75809490 + L1ME3A LINE L1 6090 6170 0 361 292 39 23 chr3 151715162 151715292 -75809286 - MIR SINE MIR -57 151 20 667 241 0 7 chr3 151715487 151715632 -75808946 + MER45A DNA AcHobo 34 177 -1 394 295 18 9 chr3 151715862 151715974 -75808604 - MIR3 SINE MIR 0 208 96 263 329 199 13 chr3 151716818 151717195 -75807383 - L2 LINE L2 -561 2753 2307 317 284 149 28 chr3 151717406 151717547 -75807031 - MIR3 SINE MIR -26 182 25 3823 39 2 2 chr3 151718831 151719294 -75805284 - L1PA3 LINE L1 0 6155 5693 210 298 58 10 chr3 151719341 151719445 -75805133 - MIR SINE MIR -152 110 2 233 256 37 49 chr3 151719634 151719716 -75804862 + MIR SINE MIR 170 250 -12 344 325 75 38 chr3 151720118 151720278 -75804300 - L1MEd LINE L1 -5834 285 120 30 69 0 0 chr3 151720648 151720706 -75803872 + AT_rich Low_complexity Low_complexity 1 58 0 553 55 85 18 chr3 151722105 151722270 -75802308 + (TG)n Simple_repeat Simple_repeat 2 177 0 908 28 39 47 chr3 151722288 151722658 -75801920 + (TG)n Simple_repeat Simple_repeat 1 367 0 1466 199 133 27 chr3 151723050 151723462 -75801116 - LTR16A1 LTR ERVL -1 456 1 745 297 57 18 chr3 151723771 151723903 -75800675 - MER115 DNA AcHobo -6 687 562 369 0 0 0 chr3 151723903 151723944 -75800634 + (TA)n Simple_repeat Simple_repeat 1 41 0 745 297 57 18 chr3 151723944 151724094 -75800484 - MER115 DNA AcHobo -131 562 394 363 187 13 0 chr3 151724102 151724177 -75800401 - MLT1C LTR MaLR -2 465 390 299 191 0 15 chr3 151724178 151724246 -75800332 + MLT1G1 LTR MaLR 523 589 -6 332 291 0 0 chr3 151724267 151724346 -75800232 - MER115 DNA AcHobo -614 79 1 8802 142 27 21 chr3 151724427 151726073 -75798505 + L1MA3 LINE L1 3662 5297 -1008 1925 66 0 0 chr3 151726073 151726301 -75798277 + AluY SINE Alu 35 262 -49 8802 142 27 21 chr3 151726301 151726752 -75797826 + L1MA3 LINE L1 5297 5744 -561 201 39 0 0 chr3 151726752 151726778 -75797800 + (TG)n Simple_repeat Simple_repeat 2 27 0 8802 142 27 21 chr3 151726778 151727291 -75797287 + L1MA3 LINE L1 5744 6299 -6 530 307 23 23 chr3 151727466 151727723 -75796855 + MARNA DNA Mariner 96 352 -234 202 222 19 19 chr3 151727727 151727781 -75796797 + L2 LINE L2 2682 2735 -579 315 311 76 0 chr3 151727928 151728047 -75796531 - MIR SINE MIR -12 250 123 1154 152 121 92 chr3 151728093 151728508 -75796070 - Charlie5 DNA MER1_type 0 2618 2192 513 145 37 10 chr3 151728531 151728645 -75795933 - Charlie5 DNA MER1_type -2490 122 1 234 218 30 129 chr3 151728662 151728693 -75795885 - MIR SINE MIR -93 169 137 1984 85 3 27 chr3 151728693 151728986 -75795592 + L1PA7 LINE L1 5867 6152 -2 234 218 30 129 chr3 151728986 151729055 -75795523 - MIR SINE MIR -125 137 79 276 250 59 0 chr3 151729095 151729163 -75795415 - MIR SINE MIR -144 118 47 181 318 0 0 chr3 151729418 151729462 -75795116 - L2 LINE L2 -78 3194 3151 684 173 17 35 chr3 151729463 151729636 -75794942 - Charlie1 DNA MER1_type 0 2761 2592 1007 125 0 7 chr3 151729637 151729773 -75794805 + AluSq/x SINE Alu 1 135 -177 1682 109 0 4 chr3 151729773 151730002 -75794576 + AluSc SINE Alu 1 228 -81 1092 241 26 20 chr3 151730123 151730468 -75794110 - L1MCb LINE L1 -5698 347 1 1572 111 0 5 chr3 151730504 151730721 -75793857 + AluSq SINE Alu 84 299 -14 332 196 33 43 chr3 151730896 151730988 -75793590 - MLT1H LTR MaLR -2 547 457 384 289 31 92 chr3 151731379 151731639 -75792939 - L1MC4a LINE L1 -1882 5926 5683 312 27 0 0 chr3 151731647 151731684 -75792894 + (TG)n Simple_repeat Simple_repeat 1 37 0 331 98 20 0 chr3 151731724 151731775 -75792803 - MER20 DNA MER1_type -47 172 121 5200 127 22 7 chr3 151731776 151732701 -75791877 + L1PB2 LINE L1 5201 6139 -12 305 286 65 30 chr3 151733028 151733196 -75791382 - L1MEd LINE L1 -4872 1247 1074 829 190 62 41 chr3 151733292 151733534 -75791044 - L1ME3 LINE L1 -68 6094 5848 230 237 72 59 chr3 151733527 151733848 -75790730 - L1MEd LINE L1 -5022 1097 773 * 328 346 85 46 chr3 151734035 151734318 -75790260 - L1MEd LINE L1 -5503 616 323 4175 73 11 4 chr3 151734660 151735208 -75789370 + MER41A LTR ERV1 3 554 0 1325 201 79 47 chr3 151735787 151736191 -75788387 + MLT1C LTR MaLR 36 452 -15 214 234 31 47 chr3 151736199 151736263 -75788315 + MIR SINE MIR 89 151 -111 1614 257 62 23 chr3 151736282 151736857 -75787721 + MLT1G LTR MaLR 15 590 0 187 256 122 24 chr3 151737239 151737321 -75787257 - L2 LINE L2 -4 3268 3179 1393 183 141 16 chr3 151737483 151738018 -75786560 + LTR50 LTR ERVL 1 681 -114 3374 160 30 12 chr3 151738050 151738724 -75785854 + L1MB2 LINE L1 5486 6171 0 249 280 27 0 chr3 151738914 151738989 -75785589 - MLT1J1 LTR MaLR -128 318 242 457 253 52 13 chr3 151739013 151739167 -75785411 - MLT1J2 LTR MaLR -276 174 15 2472 76 0 0 chr3 151739469 151739770 -75784808 - AluY SINE Alu -10 301 1 334 219 50 47 chr3 151740576 151740774 -75783804 + L1ME3 LINE L1 5948 6157 -13 345 62 0 0 chr3 151740810 151740858 -75783720 + (CA)n Simple_repeat Simple_repeat 2 49 0 2012 258 82 2 chr3 151741772 151742318 -75782260 - MLT1G1 LTR MaLR -5 590 1 195 42 0 0 chr3 151742354 151742378 -75782200 + (TG)n Simple_repeat Simple_repeat 1 24 0 2249 92 0 10 chr3 151743065 151743395 -75781183 + AluY SINE Alu 1 311 0 413 287 42 59 chr3 151743896 151744133 -75780445 - L2 LINE L2 -3 3310 3078 195 139 0 0 chr3 151744221 151744257 -75780321 + (TAA)n Simple_repeat Simple_repeat 2 37 0 266 256 0 37 chr3 151744257 151744339 -75780239 - MIR SINE MIR 0 262 184 3600 107 47 11 chr3 151745543 151746114 -75778464 - L1PA13 LINE L1 -5 6158 5567 906 202 75 4 chr3 151746284 151746512 -75778066 - MER58 DNA MER1_type -66 275 32 323 167 0 115 chr3 151747603 151747699 -75776879 + MER103 DNA DNA 7 91 -75 2138 152 55 65 chr3 151748576 151748719 -75775859 - Charlie1 DNA MER1_type -18 2743 2600 2144 115 13 10 chr3 151748719 151749023 -75775555 + AluSx SINE Alu 1 305 -7 2138 152 55 65 chr3 151749023 151749296 -75775282 - Charlie1 DNA MER1_type -161 2600 2332 1012 65 7 7 chr3 151749296 151749435 -75775143 + MER85 DNA T2_type 1 139 0 2138 152 55 65 chr3 151749435 151749604 -75774974 - Charlie1 DNA MER1_type -429 2332 2163 1212 81 0 0 chr3 151749620 151749769 -75774809 - AluSg/x SINE Alu -26 284 136 612 127 76 0 chr3 151749776 151749894 -75774684 - Charlie1 DNA MER1_type -591 2170 2044 549 204 91 54 chr3 151750060 151750246 -75774332 - MLT1J2 LTR MaLR -231 219 27 7450 32 1 0 chr3 151750398 151751620 -75772958 + L1PA4 LINE L1 4964 6186 0 3819 194 159 17 chr3 151751744 151752860 -75771718 - L1MCa LINE L1 -4321 2243 969 1717 296 20 17 chr3 151752938 151753583 -75770995 - L1MCa LINE L1 -5113 932 286 238 227 121 0 chr3 151753767 151753833 -75770745 + L3 LINE CR1 1502 1575 -2 506 265 54 6 chr3 151754175 151754341 -75770237 - MIR SINE MIR 0 262 89 936 291 45 6 chr3 151754365 151754678 -75769900 - LTR16A LTR ERVL 0 450 126 359 261 34 0 chr3 151754808 151754896 -75769682 - MER5A DNA MER1_type -77 112 22 244 299 46 23 chr3 151754908 151754995 -75769583 - MIR SINE MIR -172 90 2 2304 139 24 12 chr3 151755132 151755542 -75769036 + MER31A LTR ERV1 1 415 -70 1851 184 78 43 chr3 151755663 151756125 -75768453 - MLT2B1 LTR ERVL -42 478 1 262 320 29 10 chr3 151756128 151756231 -75768347 + MIR SINE MIR 157 261 -1 2352 110 3 0 chr3 151756352 151756661 -75767917 - AluSg SINE Alu 0 310 1 21 0 0 0 chr3 151757493 151757514 -75767064 + AT_rich Low_complexity Low_complexity 1 21 0 5386 133 15 33 chr3 151757884 151758862 -75765716 - Tigger1 DNA MER2_type -1456 962 2 334 338 136 7 chr3 151759563 151759717 -75764861 + MIR3 SINE MIR 17 190 -18 198 433 21 0 chr3 151761130 151761227 -75763351 - MIR SINE MIR -90 118 20 784 277 40 0 chr3 151761477 151761726 -75762852 - MIR SINE MIR 0 262 4 306 335 49 30 chr3 151762151 151762354 -75762224 - L1MC/D LINE L1 -2035 5773 5567 281 45 0 23 chr3 151762852 151762896 -75761682 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 1505 183 44 35 chr3 151763255 151763594 -75760984 - THE1B LTR MaLR -22 342 1 761 125 33 25 chr3 151764497 151764617 -75759961 - FRAM SINE Alu -21 155 35 287 328 0 35 chr3 151765137 151765308 -75759270 + CT-rich Low_complexity Low_complexity 3 167 0 * 329 296 23 23 chr3 151765192 151765368 -75759210 + C-rich Low_complexity Low_complexity 1 176 0 4465 24 4 2 chr3 151765492 151766046 -75758532 - L1PA4 LINE L1 -301 5854 5300 2149 141 50 46 chr3 151766696 151767157 -75757421 + L1MB1 LINE L1 5646 6108 -60 452 233 74 3 chr3 151767298 151767456 -75757122 - MLT1J2 LTR MaLR 0 446 279 1572 155 19 63 chr3 151768503 151768820 -75755758 - AluJo SINE Alu -9 303 1 328 361 30 8 chr3 151770236 151770369 -75754209 + MIR SINE MIR 6 141 -121 306 274 138 13 chr3 151771304 151771470 -75753108 - MIR SINE MIR -15 247 55 319 227 148 0 chr3 151771654 151771742 -75752836 - MIR SINE MIR -56 152 52 1945 187 10 62 chr3 151772126 151772172 -75752406 + LOR1b LTR ERV1 1 48 -413 2310 107 0 7 chr3 151772172 151772480 -75752098 - AluSg SINE Alu -4 306 1 1945 187 10 62 chr3 151772480 151772919 -75751659 + LOR1b LTR ERV1 48 461 0 6712 70 6 5 chr3 151773162 151774649 -75749929 + L1PA7 LINE L1 4652 6141 -13 1427 184 19 41 chr3 151774654 151775018 -75749560 - Tigger1 DNA MER2_type -1154 1264 909 386 258 125 71 chr3 151776959 151777254 -75747324 - L1MC/D LINE L1 -2048 5760 5450 311 304 32 16 chr3 151777464 151777589 -75746989 - L2 LINE L2 -31 3282 3156 325 215 13 13 chr3 151777924 151778003 -75746575 - MER116 DNA Mariner 0 80 2 387 324 0 9 chr3 151778865 151778976 -75745602 - MIR3 SINE MIR -94 114 5 575 258 112 59 chr3 151779307 151779594 -75744984 - L2 LINE L2 -8 3305 3004 409 304 66 6 chr3 151779711 151779892 -75744686 - MER117 DNA MER1_type -1 196 5 207 167 0 0 chr3 151781370 151781412 -75743166 + (TA)n Simple_repeat Simple_repeat 1 42 0 329 124 0 202 chr3 151781719 151781808 -75742770 + MER5A DNA MER1_type 4 74 -115 34 65 0 0 chr3 151781921 151781983 -75742595 + AT_rich Low_complexity Low_complexity 1 62 0 1366 234 24 27 chr3 151781986 151782400 -75742178 - L1MB8 LINE L1 -15 6163 5751 186 250 25 0 chr3 151783488 151783528 -75741050 + L2 LINE L2 3205 3245 -27 180 271 21 0 chr3 151783894 151783942 -75740636 + L2 LINE L2 3222 3270 -43 756 179 0 8 chr3 151784620 151784743 -75739835 + FLAM_C SINE Alu 3 124 -19 29 0 0 0 chr3 151784743 151784772 -75739806 + AT_rich Low_complexity Low_complexity 1 29 0 718 197 8 0 chr3 151785036 151785163 -75739415 + FLAM_A SINE Alu 1 128 -5 2032 140 42 25 chr3 151785952 151786310 -75738268 + THE1B LTR MaLR 1 364 0 764 217 19 14 chr3 151786362 151786574 -75738004 - L1MCc LINE L1 -6181 242 30 483 218 49 84 chr3 151786604 151786829 -75737749 + MER112 DNA MER1_type 42 258 -2 265 278 0 0 chr3 151786924 151786996 -75737582 - LTR67 LTR ERVL -9 548 477 272 325 83 17 chr3 151787168 151787288 -75737290 - LTR67 LTR ERVL -295 262 135 22 56 0 0 chr3 151787401 151787437 -75737141 + AT_rich Low_complexity Low_complexity 1 36 0 467 304 99 96 chr3 151787438 151787991 -75736587 + L2 LINE L2 2199 2753 -561 221 175 50 0 chr3 151788319 151788359 -75736219 + L2 LINE L2 3197 3238 -75 1527 266 130 22 chr3 151788495 151789093 -75735485 + MLT2F LTR ERVL 1 663 0 2066 138 33 21 chr3 151789229 151789562 -75735016 + MER1B DNA MER1_type 1 337 0 374 318 46 7 chr3 151789566 151789717 -75734861 + MIR SINE MIR 1 157 -105 445 265 7 75 chr3 151789973 151790120 -75734458 - MIR3 SINE MIR -4 204 68 1612 262 32 34 chr3 151790402 151790905 -75733673 - L2 LINE L2 -1 3312 2811 3453 198 32 7 chr3 151791161 151791888 -75732690 - Charlie1a DNA MER1_type -706 749 5 336 324 58 54 chr3 151791948 151792189 -75732389 - L2 LINE L2 -218 3054 2813 838 235 33 8 chr3 151792208 151792451 -75732127 + L1MC4 LINE L1 7426 7674 -368 1337 268 30 13 chr3 151792608 151793003 -75731575 - LTR16B LTR ERVL -16 448 47 3328 130 9 6 chr3 151793100 151793629 -75730949 + L1PA16 LINE L1 5636 6166 0 21 0 0 0 chr3 151793772 151793793 -75730785 + AT_rich Low_complexity Low_complexity 1 21 0 602 167 0 0 chr3 151793955 151794057 -75730521 - AluSp/q SINE Alu -2 311 210 3517 53 22 0 chr3 151794058 151794509 -75730069 + L1PA6 LINE L1 5692 6152 -2 321 254 43 87 chr3 151794509 151794694 -75729884 + L1ME3A LINE L1 5967 6143 -27 453 325 43 32 chr3 151794932 151795120 -75729458 - MIR SINE MIR -50 212 23 2018 111 64 0 chr3 151795394 151795674 -75728904 + AluSx SINE Alu 8 305 -7 260 196 0 0 chr3 151795783 151795839 -75728739 - L1MA10 LINE L1 -1 6333 6278 1496 93 28 0 chr3 151796138 151796352 -75728226 + L1PA10 LINE L1 5945 6164 -4 296 218 127 18 chr3 151796418 151796528 -75728050 - L1ME4a LINE L1 -198 5923 5802 1804 83 91 8 chr3 151796650 151796904 -75727674 - AluY SINE Alu -2 309 35 27 0 0 0 chr3 151797079 151797106 -75727472 + AT_rich Low_complexity Low_complexity 1 27 0 197 176 10 29 chr3 151798745 151798847 -75725731 + (TA)n Simple_repeat Simple_repeat 1 100 0 2190 121 50 19 chr3 151798929 151799293 -75725285 + THE1C LTR MaLR 1 375 0 236 189 31 24 chr3 151799313 151799440 -75725138 + (TA)n Simple_repeat Simple_repeat 2 129 0 9415 175 34 4 chr3 151800957 151802743 -75721835 + L1M1 LINE L1 23 1862 -5703 1357 99 99 0 chr3 151802753 151802976 -75721602 + L1MA1 LINE L1 6058 6302 0 22 0 0 0 chr3 151803008 151803030 -75721548 + AT_rich Low_complexity Low_complexity 1 22 0 1252 138 110 8 chr3 151803961 151804207 -75720371 + MSTA LTR MaLR 1 271 -157 486 334 119 26 chr3 151804258 151804560 -75720018 - L2 LINE L2 -556 2758 2429 2129 112 0 7 chr3 151805218 151805524 -75719054 - AluY SINE Alu 0 311 1 270 257 27 0 chr3 151805567 151805641 -75718937 - MIR3 SINE MIR -8 200 125 5375 203 60 41 chr3 151805651 151806971 -75717607 - MER45R DNA AcHobo -125 1456 104 2355 52 0 3 chr3 151806971 151807311 -75717267 + AluY SINE Alu 1 339 0 5375 203 60 41 chr3 151807311 151807417 -75717161 - MER45R DNA AcHobo -1477 104 1 261 271 0 31 chr3 151807417 151807470 -75717108 + MER20 DNA MER1_type 164 213 -6 242 191 0 0 chr3 151807472 151807519 -75717059 - L1ME2 LINE L1 -203 5961 5915 524 214 9 30 chr3 151807542 151807695 -75716883 - L1ME1 LINE L1 0 6334 6029 1844 156 3 26 chr3 151808825 151809132 -75715446 - AluJb SINE Alu -8 304 5 450 318 76 21 chr3 151810386 151810675 -75713903 + LTR16A LTR ERVL 146 450 0 1106 256 126 7 chr3 151811424 151811830 -75712748 - LTR33A LTR ERVL 0 523 70 883 43 0 0 chr3 151813300 151813415 -75711163 - L1P LINE L1 -1349 4797 4683 1283 26 0 0 chr3 151813415 151813571 -75711007 - L1P LINE L1 -1164 4982 4827 41575 46 4 2 chr3 151813671 151819739 -75704839 - L1PA3 LINE L1 -77 6078 1 3538 146 18 26 chr3 151819857 151820541 -75704037 - L1MA8 LINE L1 0 6291 5614 1520 248 33 14 chr3 151820928 151821416 -75703162 + L1ME1 LINE L1 5665 6161 -5 26 0 0 0 chr3 151821651 151821677 -75702901 + AT_rich Low_complexity Low_complexity 1 26 0 778 222 6 17 chr3 151822397 151822577 -75702001 - MER5B DNA MER1_type 0 178 1 455 283 96 35 chr3 151822722 151822794 -75701784 + L1MC4a LINE L1 5405 5471 -650 2121 79 47 0 chr3 151822794 151823071 -75701507 + AluY SINE Alu 1 290 -21 455 283 96 35 chr3 151823071 151823228 -75701350 + L1MC4a LINE L1 5471 5648 -473 2214 134 57 8 chr3 151823266 151823668 -75700910 + MSTA LTR MaLR 7 428 0 7944 163 25 41 chr3 151823668 151824204 -75700374 + MSTA-int LTR MaLR 1 544 -1107 2245 114 0 0 chr3 151824204 151824511 -75700067 + AluY SINE Alu 1 307 -4 7944 163 25 41 chr3 151824511 151824686 -75699892 + MSTA-int LTR MaLR 544 720 -931 2733 85 8 0 chr3 151824686 151825038 -75699540 - THE1A LTR MaLR 0 355 1 11503 92 4 21 chr3 151825038 151826642 -75697936 - THE1A-int LTR MaLR 0 1580 3 2560 93 11 11 chr3 151826646 151827000 -75697578 - THE1A LTR MaLR -1 354 1 7944 163 25 41 chr3 151827000 151827638 -75696940 + MSTA-int LTR MaLR 722 1331 -320 2061 90 61 4 chr3 151827638 151827916 -75696662 + AluSg SINE Alu 4 297 -13 7944 163 25 41 chr3 151827916 151828152 -75696426 + MSTA-int LTR MaLR 1331 1569 -82 1471 114 5 9 chr3 151828152 151828372 -75696206 + THE1A LTR MaLR 26 244 -111 456 85 0 49 chr3 151828372 151828454 -75696124 + MSTA-int LTR MaLR 1503 1580 0 2247 158 48 10 chr3 151828454 151828866 -75695712 + MSTA LTR MaLR 1 428 0 313 304 25 42 chr3 151828871 151829108 -75695470 + L1MC4a LINE L1 5694 5926 -1882 1255 157 0 43 chr3 151829123 151829358 -75695220 + Tigger2a DNA MER2_type 1 225 -209 23 0 0 0 chr3 151829358 151829381 -75695197 + AT_rich Low_complexity Low_complexity 1 23 0 4249 103 12 12 chr3 151829385 151830056 -75694522 - L1MA1 LINE L1 -4 6298 5628 1079 144 31 18 chr3 151830056 151830278 -75694300 + Tigger2a DNA MER2_type 210 434 0 1187 118 10 5 chr3 151831857 151832060 -75692518 - MER6A DNA MER2_type -29 576 373 973 82 15 0 chr3 151832060 151832194 -75692384 + AluY SINE Alu 175 310 -1 1653 210 26 6 chr3 151832194 151832537 -75692041 - MER6A DNA MER2_type -224 381 32 1620 195 12 0 chr3 151832568 151832906 -75691672 + L1ME1 LINE L1 5815 6156 -10 318 140 0 0 chr3 151832951 151833001 -75691577 - L2 LINE L2 -1 3312 3263 312 237 170 30 chr3 151833363 151833498 -75691080 + MIR3 SINE MIR 1 154 -54 265 245 40 26 chr3 151833502 151833613 -75690965 + MIR SINE MIR 34 147 -61 402 137 126 0 chr3 151833616 151833711 -75690867 + L1MB4 LINE L1 6074 6180 0 229 367 92 0 chr3 151834394 151834514 -75690064 + L2 LINE L2 2939 3069 -203 200 200 0 0 chr3 151834800 151834835 -75689743 + (TTCA)n Simple_repeat Simple_repeat 2 36 0 254 368 77 0 chr3 151834836 151834953 -75689625 - L2 LINE L2 -1 3271 3146 2288 104 3 0 chr3 151835754 151836052 -75688526 + AluSx SINE Alu 1 299 -13 645 139 14 148 chr3 151836391 151836547 -75688031 - MER53 DNA DNA 0 189 68 1633 182 7 7 chr3 151836547 151836838 -75687740 + AluJo SINE Alu 6 296 -16 645 139 14 148 chr3 151836838 151836897 -75687681 - MER53 DNA DNA -121 68 3 536 222 113 101 chr3 151837460 151837727 -75686851 + MLT1J LTR MaLR 60 370 -141 1126 279 48 21 chr3 151837727 151838164 -75686414 + LTR16A LTR ERVL 1 449 -1 536 222 113 101 chr3 151838164 151838236 -75686342 + MLT1J LTR MaLR 370 440 -71 207 0 0 0 chr3 151839751 151839774 -75684804 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 183 42 0 0 chr3 151839927 151839951 -75684627 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 2225 100 0 3 chr3 151840089 151840379 -75684199 - AluSx SINE Alu -7 305 17 1873 152 17 20 chr3 151840798 151841095 -75683483 + AluJo SINE Alu 1 296 -16 27 0 0 0 chr3 151841818 151841845 -75682733 + AT_rich Low_complexity Low_complexity 1 27 0 746 251 50 0 chr3 151841881 151842060 -75682518 + MER5A DNA MER1_type 2 189 0 436 311 67 52 chr3 151842532 151842725 -75681853 - L2 LINE L2 -2 3270 3075 26 30 0 0 chr3 151843614 151843647 -75680931 + AT_rich Low_complexity Low_complexity 1 33 0 760 296 88 49 chr3 151845091 151845277 -75679301 - L2 LINE L2 -5 3308 3131 709 213 56 30 chr3 151845277 151845474 -75679104 + MER105 DNA DNA 1 202 -2 760 296 88 49 chr3 151845474 151845754 -75678824 - L2 LINE L2 -182 3131 2824 251 259 0 0 chr3 151845992 151846046 -75678532 - LTR16C LTR ERVL -10 481 428 331 188 52 62 chr3 151846108 151846204 -75678374 - LTR16A1 LTR ERVL -165 292 198 358 263 58 139 chr3 151847093 151847186 -75677392 - MIR SINE MIR 0 262 163 1885 159 3 7 chr3 151847186 151847482 -75677096 + AluSx SINE Alu 7 301 -11 358 263 58 139 chr3 151847482 151847502 -75677076 - MIR SINE MIR -99 163 143 1470 156 114 19 chr3 151847502 151847810 -75676768 + MER44D DNA MER2_type 2 608 -1 358 263 58 139 chr3 151847810 151847969 -75676609 - MIR SINE MIR -119 143 11 249 232 145 0 chr3 151847978 151848047 -75676531 + MER117 DNA MER1_type 114 192 -5 1445 183 49 23 chr3 151848216 151848561 -75676017 - MLT1A2 LTR MaLR -2 372 19 308 297 40 20 chr3 151848571 151848672 -75675906 + L2 LINE L2 2985 3087 -185 877 36 0 18 chr3 151850312 151850424 -75674154 + L1PA10 LINE L1 6054 6163 -5 276 296 123 25 chr3 151850774 151850936 -75673642 + MER5B DNA MER1_type 1 178 0 594 226 148 26 chr3 151851995 151852150 -75672428 + MER5A DNA MER1_type 10 183 -6 2175 86 4 4 chr3 151854261 151854576 -75670002 - AluSg SINE Alu 0 315 1 449 83 94 10 chr3 151855808 151855904 -75668674 + AluSc SINE Alu 192 295 -14 332 196 33 43 chr3 151856078 151856170 -75668408 - MLT1H LTR MaLR -2 547 457 328 302 32 83 chr3 151856561 151856813 -75667765 - L1MC4a LINE L1 -1882 5926 5688 870 134 0 0 chr3 151857077 151857219 -75667359 - L1P LINE L1 -1475 4671 4530 * 6862 108 10 0 chr3 151857212 151858315 -75666263 - L1P LINE L1 -2451 3695 2582 1185 241 63 17 chr3 151861560 151861909 -75662669 - L1ME3A LINE L1 -251 5919 5555 23 0 0 0 chr3 151862279 151862302 -75662276 + AT_rich Low_complexity Low_complexity 1 23 0 1044 193 64 124 chr3 151863000 151863388 -75661190 + MLT1A1 LTR MaLR 1 365 0 181 164 0 49 chr3 151863465 151863526 -75661052 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 26 0 0 0 chr3 151863867 151863893 -75660685 + AT_rich Low_complexity Low_complexity 1 26 0 7351 18 6 0 chr3 151863893 151864785 -75659793 - L1PA3 LINE L1 0 6155 5259 372 88 0 0 chr3 151865003 151865060 -75659518 + (TG)n Simple_repeat Simple_repeat 2 58 0 187 346 64 0 chr3 151865258 151865336 -75659242 + L2 LINE L2 3168 3250 -22 702 205 55 45 chr3 151865346 151865426 -75659152 - L1MC4 LINE L1 0 8042 7964 2227 151 29 16 chr3 151865426 151865811 -75658767 - MLT1B LTR MaLR 0 390 1 702 205 55 45 chr3 151865811 151866092 -75658486 - L1MC4 LINE L1 -78 7964 5161 935 183 68 159 chr3 151868533 151868960 -75655618 - MSTD LTR MaLR -8 388 1 343 266 49 120 chr3 151868960 151869369 -75655209 - L2 LINE L2 -249 3064 2684 1180 153 48 19 chr3 151870365 151870574 -75654004 - MER20 DNA MER1_type -4 215 1 767 211 133 0 chr3 151871774 151871940 -75652638 + MER5A DNA MER1_type 2 189 0 1134 144 45 5 chr3 151872107 151872308 -75652270 - MER3 DNA MER1_type 0 209 1 274 217 75 38 chr3 151873215 151873321 -75651257 + L1ME3A LINE L1 5813 5922 -248 24 0 0 0 chr3 151874538 151874562 -75650016 + AT_rich Low_complexity Low_complexity 1 24 0 273 119 0 0 chr3 151874894 151874936 -75649642 + (TG)n Simple_repeat Simple_repeat 1 42 0 2142 266 237 13 chr3 151876435 151877468 -75647110 + L2 LINE L2 1 1265 -2049 205 191 0 0 chr3 151877482 151877524 -75647054 + L2 LINE L2 1801 1842 -1472 341 316 60 8 chr3 151878459 151878592 -75645986 + MIR3 SINE MIR 69 208 0 24 0 0 0 chr3 151878613 151878637 -75645941 + AT_rich Low_complexity Low_complexity 1 24 0 459 249 61 55 chr3 151878708 151878873 -75645705 - MIR3 SINE MIR -6 202 37 525 163 14 64 chr3 151879247 151879388 -75645190 + Charlie4 DNA MER1_type 1825 1958 -3 388 258 41 0 chr3 151880579 151880676 -75643902 + MER5A DNA MER1_type 9 109 -80 1147 175 96 42 chr3 151880762 151881002 -75643576 + AluJo SINE Alu 37 289 -23 2494 75 0 3 chr3 151881016 151881322 -75643256 - AluY SINE Alu -6 305 1 366 252 97 0 chr3 151881324 151881427 -75643151 - MIR SINE MIR -74 188 76 607 264 40 69 chr3 151881513 151881862 -75642716 + MLT1J1 LTR MaLR 69 407 -39 5642 210 34 38 chr3 151883034 151885204 -75639374 - L1MC1 LINE L1 -13 6320 4165 189 94 0 0 chr3 151885204 151885236 -75639342 + (TTTAA)n Simple_repeat Simple_repeat 4 35 0 5642 210 34 38 chr3 151885236 151885403 -75639175 - L1MC1 LINE L1 -2168 4165 3999 318 316 67 6 chr3 151885464 151885633 -75638945 - MER20B DNA MER1_type -5 214 34 361 345 85 6 chr3 151889064 151889229 -75635349 + MIR SINE MIR 7 184 -78 405 0 0 0 chr3 151890169 151890214 -75634364 + (TA)n Simple_repeat Simple_repeat 2 46 0 205 288 63 54 chr3 151891489 151891600 -75632978 + L2 LINE L2 3137 3248 -24 1473 181 38 26 chr3 151891642 151891984 -75632594 - MLT1A1 LTR MaLR -10 355 10 226 330 140 35 chr3 151892823 151893023 -75631555 - L2 LINE L2 -38 3234 3014 248 282 0 39 chr3 151893032 151893110 -75631468 - MIR SINE MIR -90 118 44 487 208 20 0 chr3 151893249 151893350 -75631228 + MLT1A1 LTR MaLR 12 114 -251 499 258 72 14 chr3 151893423 151893632 -75630946 + L1ME LINE L1 5559 5779 -342 2370 67 3 10 chr3 151893940 151894240 -75630338 - AluY SINE Alu -13 298 1 29 47 0 0 chr3 151895561 151895604 -75628974 + AT_rich Low_complexity Low_complexity 1 43 0 1851 153 30 14 chr3 151895765 151896132 -75628446 - L1MB7 LINE L1 0 6184 5812 5262 120 42 20 chr3 151896132 151896616 -75627962 - L1MA8 LINE L1 -3 6288 5816 243 0 0 0 chr3 151896616 151896643 -75627935 + (TC)n Simple_repeat Simple_repeat 2 28 0 225 0 0 0 chr3 151896642 151896667 -75627911 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 5262 120 42 20 chr3 151896643 151897148 -75627430 - L1MA8 LINE L1 -475 5816 5301 1312 171 143 34 chr3 151897443 151897621 -75626957 - MER47A DNA MER2_type -1957 366 209 2387 90 3 0 chr3 151897621 151897920 -75626658 - AluSx SINE Alu -12 300 1 1312 171 143 34 chr3 151897920 151898069 -75626509 - MER47A DNA MER2_type -2114 209 3 318 344 77 7 chr3 151898351 151898609 -75625969 - L1MB7 LINE L1 -508 5658 5383 491 110 4 4 chr3 151898745 151898861 -75625717 - L1M2 LINE L1 -776 5524 5414 289 163 88 12 chr3 151899272 151899352 -75625226 + L1MA10 LINE L1 6248 6333 -1 201 356 161 0 chr3 151899468 151899586 -75624992 - MIR3 SINE MIR -58 150 14 236 280 0 0 chr3 151901270 151901320 -75623258 + (TG)n Simple_repeat Simple_repeat 2 51 0 1685 199 31 8 chr3 151902485 151902842 -75621736 - MLT1A1 LTR MaLR 0 365 1 219 298 36 36 chr3 151903621 151903705 -75620873 + L2 LINE L2 2987 3070 -202 250 309 12 12 chr3 151904118 151904202 -75620376 + MIR SINE MIR 73 156 -106 1599 208 34 14 chr3 151904304 151904660 -75619918 - MLT1A2 LTR MaLR -11 363 1 394 294 90 10 chr3 151904813 151905014 -75619564 - LTR16B LTR ERVL -2 462 246 251 261 269 8 chr3 151905289 151905408 -75619170 - L2 LINE L2 -7 3265 3116 402 270 133 66 chr3 151905595 151905622 -75618956 - MIR SINE MIR 0 262 238 518 250 8 0 chr3 151905622 151905750 -75618828 - MER94 DNA DNA -1 133 5 402 270 133 66 chr3 151905750 151905775 -75618803 - MIR SINE MIR -24 238 216 1800 186 6 6 chr3 151905775 151906086 -75618492 - AluJo SINE Alu -1 311 1 402 270 133 66 chr3 151906086 151906273 -75618305 - MIR SINE MIR -46 216 6 187 232 145 0 chr3 151906423 151906492 -75618086 + L2 LINE L2 3235 3313 0 210 347 105 0 chr3 151907896 151907991 -75616587 - MIR3 SINE MIR -46 162 58 542 254 104 21 chr3 151908540 151908780 -75615798 - L1MC4 LINE L1 -925 7117 6858 189 262 82 66 chr3 151909675 151909736 -75614842 - L2 LINE L2 -64 3208 3147 2403 139 65 2 chr3 151911908 151912311 -75612267 - MSTA LTR MaLR 0 428 1 23 0 0 0 chr3 151912431 151912454 -75612124 + AT_rich Low_complexity Low_complexity 1 23 0 331 268 108 5 chr3 151913709 151913903 -75610675 - L1ME4a LINE L1 -84 6037 5824 417 306 139 12 chr3 151913908 151914310 -75610268 - L1ME4a LINE L1 -416 5705 5349 1078 265 127 19 chr3 151915146 151915617 -75608961 - MLT1G1 LTR MaLR 0 595 74 575 156 12 55 chr3 151916177 151916199 -75608379 - L1MA9 LINE L1 -220 5945 5924 13572 106 90 26 chr3 151916199 151918473 -75606105 + Tigger1 DNA MER2_type 1 2418 0 575 156 12 55 chr3 151918473 151918588 -75605990 - L1MA9 LINE L1 -241 5924 5814 836 113 0 0 chr3 151918590 151918705 -75605873 - AluY SINE Alu -3 308 194 2100 75 4 0 chr3 151918705 151918970 -75605608 - AluY SINE Alu -45 266 1 477 295 185 12 chr3 151919020 151919345 -75605233 - L1M4 LINE L1 -3256 3701 3321 451 206 0 22 chr3 151919357 151919449 -75605129 + MER21B LTR ERV1 1 90 -773 28 0 0 0 chr3 151919495 151919523 -75605055 + AT_rich Low_complexity Low_complexity 1 28 0 1258 139 5 23 chr3 151919535 151919750 -75604828 - L1PB3 LINE L1 -3 6151 5941 1529 105 26 18 chr3 151923297 151923525 -75601053 - MER30 DNA MER1_type 0 230 1 4254 45 17 6 chr3 151923676 151924207 -75600371 - L1PA7 LINE L1 0 6154 5618 439 99 0 0 chr3 151924208 151924279 -75600299 + L1P LINE L1 5235 5305 -841 390 257 31 172 chr3 151924525 151924844 -75599734 - L1M4 LINE L1 -5658 1201 688 559 290 43 13 chr3 151924873 151925104 -75599474 - L1M4 LINE L1 -6611 248 11 38 51 0 0 chr3 151925745 151925804 -75598774 + AT_rich Low_complexity Low_complexity 1 59 0 1032 203 18 53 chr3 151926827 151927054 -75597524 - MER20 DNA MER1_type 0 219 1 838 231 60 28 chr3 151927680 151927931 -75596647 - MIR SINE MIR 0 262 4 273 173 39 0 chr3 151928500 151928552 -75596026 - MIR SINE MIR -119 143 90 591 53 0 0 chr3 151928829 151928904 -75595674 + (TTTTA)n Simple_repeat Simple_repeat 1 75 0 17630 80 6 1 chr3 151928904 151932267 -75592311 - L1PA7 LINE L1 -24 6130 2752 1598 89 0 0 chr3 151932270 151932507 -75592071 - L1P4 LINE L1 -638 5527 5291 253 256 81 12 chr3 151932519 151932605 -75591973 + MIR SINE MIR 94 185 -77 340 227 0 20 chr3 151932727 151932828 -75591750 + L1MC3 LINE L1 6517 6601 -1184 1288 205 118 52 chr3 151932871 151933252 -75591326 + L1MD3 LINE L1 6547 6952 -1043 23 0 0 0 chr3 151933362 151933385 -75591193 + AT_rich Low_complexity Low_complexity 1 23 0 2029 147 3 6 chr3 151933621 151933934 -75590644 + AluJb SINE Alu 1 312 0 2624 149 49 4 chr3 151934122 151934631 -75589947 - L1MA9 LINE L1 -5 6307 5776 268 287 22 15 chr3 151934631 151934767 -75589811 + (CATATA)n Simple_repeat Simple_repeat 6 142 0 2910 140 9 36 chr3 151934778 151935473 -75589105 - L1MA9 LINE L1 -538 5774 5097 474 300 142 65 chr3 151935915 151936252 -75588326 + L2 LINE L2 2909 3271 -1 220 265 0 0 chr3 151938151 151938200 -75586378 + MIR3 SINE MIR 150 198 -10 732 164 101 13 chr3 151938258 151938417 -75586161 - MIR SINE MIR 0 262 90 3196 20 0 0 chr3 151938962 151939367 -75585211 - L1P LINE L1 -757 5389 4985 3491 38 0 5 chr3 151939367 151939785 -75584793 + L1PA4 LINE L1 5733 6155 0 5110 135 39 0 chr3 151939788 151940953 -75583625 - L1PA14 LINE L1 -5 6156 4949 255 79 0 0 chr3 151940961 151940999 -75583579 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 405 313 49 25 chr3 151941398 151941561 -75583017 + MIR SINE MIR 56 222 -40 989 258 48 30 chr3 151941580 151941952 -75582626 + MLT1I LTR MaLR 8 386 -23 195 250 156 0 chr3 151942914 151942978 -75581600 - MIR SINE MIR -26 236 163 2393 111 0 0 chr3 151943098 151943405 -75581173 + AluSc SINE Alu 1 307 -2 854 257 75 4 chr3 151944483 151944724 -75579854 - MIR SINE MIR -1 261 4 881 269 206 31 chr3 151945818 151946437 -75578141 + L2 LINE L2 2600 3313 0 215 205 0 0 chr3 151946436 151946475 -75578103 + MIR SINE MIR 224 262 0 * 24 0 0 0 chr3 151948609 151948633 -75575945 + AT_rich Low_complexity Low_complexity 1 24 0 342 280 78 31 chr3 151948787 151948980 -75575598 - L1ME4a LINE L1 -202 5919 5718 2333 103 0 3 chr3 151949195 151949495 -75575083 - AluSx SINE Alu -13 299 1 285 347 52 46 chr3 151949647 151949820 -75574758 + MIR3 SINE MIR 26 199 -9 264 315 95 0 chr3 151950534 151950639 -75573939 + MIR SINE MIR 57 170 -38 239 231 19 0 chr3 151951140 151951192 -75573386 + (TGAG)n Simple_repeat Simple_repeat 1 53 0 3391 135 6 17 chr3 151951565 151952100 -75572478 - MER1A DNA MER1_type 0 529 1 1814 172 10 7 chr3 151952363 151952659 -75571919 - AluJo SINE Alu -13 299 3 2591 101 0 0 chr3 151954277 151954632 -75569946 - THE1A LTR MaLR 0 355 1 11855 85 14 2 chr3 151954632 151956193 -75568385 - THE1A-int LTR MaLR 0 1580 2 2416 92 47 0 chr3 151956195 151956533 -75568045 - THE1A LTR MaLR -1 354 1 1698 177 0 17 chr3 151956534 151956822 -75567756 + AluJb SINE Alu 14 296 -16 369 250 51 38 chr3 151957225 151957461 -75567117 - L1ME LINE L1 -318 5803 5565 21 0 0 0 chr3 151957818 151957839 -75566739 + AT_rich Low_complexity Low_complexity 1 21 0 267 344 57 8 chr3 151958730 151958852 -75565726 + L2 LINE L2 3167 3294 -19 5312 84 13 0 chr3 151959029 151959801 -75564777 + L1PA13 LINE L1 5380 6161 -2 229 190 246 44 chr3 151960025 151960140 -75564438 + MIR SINE MIR 91 249 -13 588 312 40 14 chr3 151960279 151960504 -75564074 + MIR SINE MIR 20 258 -4 1410 189 132 86 chr3 151961241 151961764 -75562814 - MLT1E2 LTR MaLR 0 626 80 371 279 79 0 chr3 151961660 151961800 -75562778 - MLT2C1 LTR ERVL -199 198 48 * 218 340 43 53 chr3 151962223 151962317 -75562261 - L2 LINE L2 -92 3180 3088 216 0 0 0 chr3 151962379 151962403 -75562175 + (T)n Simple_repeat Simple_repeat 1 24 0 222 293 131 9 chr3 151962478 151962625 -75561953 - MIR SINE MIR -69 139 31 1069 231 12 21 chr3 151962681 151963186 -75561392 + MLT1F LTR MaLR 1 542 0 270 333 29 9 chr3 151963215 151963320 -75561258 - L2 LINE L2 -484 2830 2724 398 20 20 0 chr3 151963650 151963701 -75560877 + (TG)n Simple_repeat Simple_repeat 2 53 0 2271 110 3 0 chr3 151964153 151964444 -75560134 + AluSx SINE Alu 1 292 -20 2328 24 0 0 chr3 151964451 151964877 -75559701 - L1P2 LINE L1 -630 5525 5100 2685 37 6 0 chr3 151964877 151965202 -75559376 + L1PA4 LINE L1 5826 6155 0 630 335 5 28 chr3 151965302 151965514 -75559064 + MIR3 SINE MIR 2 208 0 845 143 0 8 chr3 151965549 151965682 -75558896 + FLAM_C SINE Alu 2 133 0 918 199 11 5 chr3 151966954 151967140 -75557438 - MER5A DNA MER1_type -2 187 1 379 252 148 0 chr3 151967420 151967555 -75557023 - MIR SINE MIR -75 187 33 201 294 73 37 chr3 151970503 151970612 -75553966 - MIR3 SINE MIR -1 207 95 23 0 0 0 chr3 151970822 151970845 -75553733 + AT_rich Low_complexity Low_complexity 1 23 0 584 304 61 14 chr3 151971542 151971756 -75552822 - MIR SINE MIR -6 256 33 183 309 24 0 chr3 151971951 151971993 -75552585 - L2 LINE L2 -20 3252 3210 241 266 18 18 chr3 151972195 151972304 -75552274 + L1P LINE L1 5317 5425 -740 2374 124 11 0 chr3 151972304 151972684 -75551894 - HSMAR2 DNA Mariner -918 384 1 231 274 0 0 chr3 151972750 151972801 -75551777 + L3 LINE CR1 1512 1562 -15 2120 115 20 3 chr3 151972975 151973270 -75551308 - AluSx SINE Alu -12 300 1 306 270 0 0 chr3 151977043 151977106 -75547472 - MIR SINE MIR -93 169 107 2418 77 7 0 chr3 151978784 151979082 -75545496 + AluY SINE Alu 1 300 -11 302 253 11 23 chr3 151979222 151979309 -75545269 + (CATA)n Simple_repeat Simple_repeat 2 87 0 999 311 38 2 chr3 151979333 151979751 -75544827 - L1MC4a LINE L1 -1941 5867 5435 228 286 187 11 chr3 151979782 151979873 -75544705 - L2 LINE L2 -5 3267 3161 2161 109 0 39 chr3 151982389 151982700 -75541878 + AluSg SINE Alu 1 299 -11 614 130 43 80 chr3 151982736 151982898 -75541680 - MER3 DNA MER1_type 0 2623 2468 1371 127 15 0 chr3 151982898 151983105 -75541473 + MER2 DNA MER2_type 1 210 -135 23 54 0 0 chr3 151983106 151983143 -75541435 + AT_rich Low_complexity Low_complexity 1 37 0 1110 132 45 66 chr3 151983187 151983429 -75541149 - MER3 DNA MER1_type 0 2471 2235 620 183 16 40 chr3 151983438 151983564 -75541014 - MER3 DNA MER1_type -87 122 47 350 254 79 56 chr3 151984756 151984882 -75539696 + MIR3 SINE MIR 49 177 -31 294 242 132 0 chr3 151984898 151984989 -75539589 - MIR3 SINE MIR -44 164 62 1851 148 7 7 chr3 151985267 151985545 -75539033 + AluSx SINE Alu 1 278 -34 443 268 177 0 chr3 151985875 151986039 -75538539 - MIR SINE MIR -13 249 57 19682 85 4 7 chr3 151986171 151989833 -75534745 + L1PA7 LINE L1 2559 6205 0 273 173 39 0 chr3 151990110 151990162 -75534416 + MIR SINE MIR 90 143 -119 938 230 65 20 chr3 151990731 151990979 -75533599 + MIR SINE MIR 4 262 0 1125 203 18 53 chr3 151991605 151991832 -75532746 + MER20 DNA MER1_type 1 219 0 38 51 0 0 chr3 151992856 151992915 -75531663 + AT_rich Low_complexity Low_complexity 1 59 0 585 302 39 13 chr3 151993556 151993788 -75530790 + L1M4b LINE L1 11 248 -6611 337 319 50 21 chr3 151993817 151993958 -75530620 + L1M4b LINE L1 688 832 -6027 253 322 26 74 chr3 151993963 151994193 -75530385 + L1M4b LINE L1 797 1015 -5840 493 107 0 0 chr3 151994381 151994456 -75530122 - L1P LINE L1 -841 5305 5231 4543 45 17 6 chr3 151994456 151994984 -75529594 + L1PA7 LINE L1 5618 6154 0 1642 97 31 22 chr3 151995135 151995363 -75529215 + MER30 DNA MER1_type 1 230 0 182 108 54 0 chr3 151999163 151999200 -75525378 + (TGAA)n Simple_repeat Simple_repeat 2 40 0 292 347 35 14 chr3 151999930 152000074 -75524504 + L1ME LINE L1 5514 5660 -461 314 269 69 44 chr3 152000098 152000258 -75524320 - MLT1J LTR MaLR 0 511 348 234 224 86 0 chr3 152000358 152000416 -75524162 - MLT1L LTR MaLR -343 272 210 260 268 47 63 chr3 152000651 152000778 -75523800 - MLT2E LTR ERVL 0 628 504 360 220 129 30 chr3 152000784 152000916 -75523662 - LTR16C LTR ERVL -2 489 345 1799 224 42 22 chr3 152001681 152002088 -75522490 - LTR53 LTR ERVL 0 519 105 7390 178 56 39 chr3 152002247 152003901 -75520677 - L1P LINE L1 -4464 1682 2 220 261 78 78 chr3 152004392 152004507 -75520071 - MIR3 SINE MIR -9 199 85 1036 172 81 0 chr3 152004564 152004738 -75519840 - MER5A DNA MER1_type 0 189 2 186 255 98 0 chr3 152005287 152005338 -75519240 + L2 LINE L2 3005 3060 -212 180 337 72 0 chr3 152005426 152005509 -75519069 - MIR SINE MIR -71 191 103 1372 188 33 11 chr3 152005517 152005793 -75518785 - AluJo SINE Alu -30 282 1 24 32 0 0 chr3 152006360 152006391 -75518187 + AT_rich Low_complexity Low_complexity 1 31 0 3792 138 35 7 chr3 152006917 152007519 -75517059 - MER49 LTR ERV1 0 923 305 1201 85 62 17 chr3 152007520 152007696 -75516882 + L1PA11 LINE L1 5987 6170 -4 5069 91 18 151 chr3 152007726 152009278 -75515300 - pTR5 LTR ERV1 0 2606 1524 1867 134 19 13 chr3 152009278 152009585 -75514993 - MER49 LTR ERV1 -614 309 1 1801 163 89 20 chr3 152009587 152009797 -75514781 - MSTD LTR MaLR -22 374 129 5158 92 41 0 chr3 152009797 152010458 -75514120 + LTR12 LTR ERV1 1 688 0 1801 163 89 20 chr3 152010458 152010597 -75513981 - MSTD LTR MaLR -267 129 1 235 259 0 70 chr3 152010793 152010906 -75513672 - MER5A DNA MER1_type -14 167 63 31 0 0 0 chr3 152012650 152012681 -75511897 + AT_rich Low_complexity Low_complexity 1 31 0 910 167 14 0 chr3 152012731 152012869 -75511709 - FRAM SINE Alu -30 146 7 697 240 142 27 chr3 152013387 152013612 -75510966 - MIR SINE MIR 0 262 12 2461 97 63 26 chr3 152014082 152014433 -75510145 + THE1B LTR MaLR 1 364 0 6394 94 18 0 chr3 152015043 152015915 -75508663 + L1P LINE L1 1 888 -5258 270 0 0 0 chr3 152016392 152016422 -75508156 + (A)n Simple_repeat Simple_repeat 1 30 0 1306 152 25 62 chr3 152018338 152018582 -75505996 - MER46A DNA MER2_type 0 236 2 24 53 0 0 chr3 152019654 152019692 -75504886 + AT_rich Low_complexity Low_complexity 1 38 0 2217 104 47 0 chr3 152021155 152021453 -75503125 - AluSx SINE Alu 0 312 1 204 40 0 0 chr3 152022266 152022291 -75502287 + (TG)n Simple_repeat Simple_repeat 2 26 0 425 193 44 35 chr3 152022352 152022466 -75502112 + MIR3 SINE MIR 88 202 -6 2024 139 0 0 chr3 152022853 152023133 -75501445 + AluSx SINE Alu 1 280 -32 180 111 0 0 chr3 152023133 152023160 -75501418 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 951 263 100 49 chr3 152023914 152024324 -75500254 - MLT1J2 LTR MaLR 0 450 20 187 327 0 0 chr3 152025965 152026017 -75498561 - L2 LINE L2 -18 3254 3203 720 311 8 23 chr3 152026630 152026887 -75497691 - MLT1I LTR MaLR 0 409 157 264 122 0 0 chr3 152028123 152028164 -75496414 + (TG)n Simple_repeat Simple_repeat 2 42 0 198 320 206 6 chr3 152028707 152028882 -75495696 + MIR SINE MIR 47 256 -6 21 0 0 0 chr3 152029082 152029103 -75495475 + AT_rich Low_complexity Low_complexity 1 21 0 2344 107 0 0 chr3 152029150 152029449 -75495129 - AluSg SINE Alu -11 299 1 21 36 0 0 chr3 152030239 152030267 -75494311 + AT_rich Low_complexity Low_complexity 1 28 0 248 277 59 33 chr3 152030402 152030580 -75493998 - MIR SINE MIR -59 203 19 1880 197 11 18 chr3 152030680 152031061 -75493517 + L1M3e LINE L1 2138 2515 -4974 989 201 43 11 chr3 152031064 152031248 -75493330 + AluJb SINE Alu 84 273 -39 3337 227 83 37 chr3 152031248 152032610 -75491968 + L1M4c LINE L1 2259 3590 -3975 381 200 14 0 chr3 152032680 152032750 -75491828 + MER21B LTR ERV1 19 89 -774 3338 213 62 19 chr3 152032757 152033486 -75491092 + MER21B LTR ERV1 47 806 -57 23 78 0 0 chr3 152033506 152033557 -75491021 + AT_rich Low_complexity Low_complexity 1 51 0 244 180 0 0 chr3 152033604 152033654 -75490924 + L1M4c LINE L1 3547 3596 -3971 1036 175 0 12 chr3 152033655 152033821 -75490757 + FRAM SINE Alu 1 156 -20 3075 213 49 25 chr3 152033821 152034766 -75489812 + L1M4c LINE L1 3608 4574 -2991 1617 162 94 20 chr3 152036047 152036510 -75488068 + Charlie1 DNA MER1_type 1 2761 0 407 229 29 0 chr3 152036862 152036967 -75487611 - MER104 DNA Tc2 -1 179 72 594 215 139 25 chr3 152037896 152038054 -75486524 + MER5B DNA MER1_type 2 177 -1 687 192 108 0 chr3 152038066 152038233 -75486345 - MER5A DNA MER1_type -3 186 2 322 279 23 47 chr3 152039176 152039305 -75485273 + MIR SINE MIR 68 193 -69 554 208 136 51 chr3 152040094 152040113 -75484465 - MLT1D LTR MaLR 0 505 489 2226 122 7 0 chr3 152040113 152040417 -75484161 - AluSq SINE Alu -7 306 1 554 208 136 51 chr3 152040417 152040772 -75483806 - MLT1D LTR MaLR -16 489 1 6480 82 3 3 chr3 152040959 152042453 -75482125 + L1PA7 LINE L1 4642 6140 -14 263 395 18 0 chr3 152042625 152042734 -75481844 + L2 LINE L2 3190 3300 -13 899 193 59 35 chr3 152042782 152042984 -75481594 + MER3 DNA MER1_type 3 209 0 21079 70 11 27 chr3 152043428 152046622 -75477956 + L1P LINE L1 80 3223 -2923 213 273 158 22 chr3 152046794 152046933 -75477645 - L2 LINE L2 -1429 1885 1728 25 31 0 0 chr3 152047866 152047898 -75476680 + AT_rich Low_complexity Low_complexity 1 32 0 2357 42 0 14 chr3 152048001 152048286 -75476292 - AluY SINE Alu -30 281 1 378 272 99 39 chr3 152048305 152048588 -75475990 - LTR16C LTR ERVL 0 491 192 309 322 70 35 chr3 152049563 152049734 -75474844 - MIR3 SINE MIR 0 208 32 276 277 274 28 chr3 152049750 152050111 -75474467 + L2 LINE L2 2834 3283 -30 1263 204 39 12 chr3 152050237 152050571 -75474007 - Charlie5 DNA MER1_type 0 2617 2275 398 168 42 11 chr3 152050595 152050690 -75473888 - Charlie5 DNA MER1_type -2497 115 18 4075 17 0 0 chr3 152051122 152051657 -75472921 - L1P LINE L1 -727 5428 4894 9552 34 2 2 chr3 152051660 152052862 -75471716 + L1P LINE L1 3693 4893 -1253 271 197 127 14 chr3 152052863 152052934 -75471644 + MIR SINE MIR 66 144 -118 323 227 0 67 chr3 152053116 152053191 -75471387 - MIR SINE MIR -73 189 120 428 78 16 0 chr3 152054795 152054859 -75469719 - MER4D LTR ERV1 -667 205 141 27 81 0 0 chr3 152056476 152056538 -75468040 + AT_rich Low_complexity Low_complexity 1 62 0 9767 157 36 9 chr3 152056652 152058963 -75465615 - L1M2 LINE L1 -592 5699 3331 16453 37 7 1 chr3 152059069 152061738 -75462840 + L1PA3 LINE L1 3310 5992 -163 7111 177 7 12 chr3 152061978 152063654 -75460924 - L1P3 LINE L1 -3773 2688 1029 322 296 178 0 chr3 152064567 152064702 -75459876 - MER5B DNA MER1_type -3 175 17 223 342 123 0 chr3 152064750 152064864 -75459714 + MER5B DNA MER1_type 5 132 -46 21 36 0 0 chr3 152065406 152065434 -75459144 + AT_rich Low_complexity Low_complexity 1 28 0 23 68 0 0 chr3 152065453 152065497 -75459081 + AT_rich Low_complexity Low_complexity 1 44 0 207 0 0 0 chr3 152066261 152066284 -75458294 + (TTTTA)n Simple_repeat Simple_repeat 2 24 0 502 255 107 125 chr3 152066579 152066929 -75457649 + Charlie8 DNA MER1_type 75 415 -2002 2120 141 3 3 chr3 152066929 152067241 -75457337 + AluSx SINE Alu 1 312 0 502 255 107 125 chr3 152067241 152067369 -75457209 + Charlie8 DNA MER1_type 415 544 -1873 459 208 126 38 chr3 152067587 152067746 -75456832 - MIR SINE MIR -27 235 63 345 310 103 0 chr3 152068459 152068614 -75455964 - MIR SINE MIR -20 242 72 202 297 31 0 chr3 152068612 152068676 -75455902 + MIR SINE MIR 83 148 -114 * 2165 142 0 3 chr3 152069016 152069348 -75455230 + MER1B DNA MER1_type 8 338 -1 1419 241 29 24 chr3 152069348 152069800 -75454778 + MER82 DNA MER2_type 31 484 -169 183 80 0 0 chr3 152070677 152070702 -75453876 + (TTCA)n Simple_repeat Simple_repeat 3 27 0 2177 124 36 33 chr3 152070962 152071325 -75453253 + THE1B LTR MaLR 1 364 0 2326 96 0 7 chr3 152071577 152071880 -75452698 - AluY SINE Alu -10 301 1 582 307 78 36 chr3 152072302 152072756 -75451822 - MLT1G1 LTR MaLR 0 595 1 2099 167 17 36 chr3 152073166 152073585 -75450993 + MSTB1 LTR MaLR 1 411 -21 7004 124 17 3 chr3 152073698 152074908 -75449670 + L1P LINE L1 3644 4870 -1276 3648 180 49 5 chr3 152075272 152076012 -75448566 - MER4D LTR ERV1 0 903 132 2441 137 55 11 chr3 152076114 152076583 -75447995 + L1MA8 LINE L1 5699 6188 -103 446 306 66 39 chr3 152077027 152077394 -75447184 + L1M4 LINE L1 4827 5200 -946 237 317 98 0 chr3 152077614 152077696 -75446882 - MIR SINE MIR -62 146 57 190 288 0 0 chr3 152077819 152077878 -75446700 + C-rich Low_complexity Low_complexity 1 59 0 51 54 0 0 chr3 152077878 152077952 -75446626 + GC_rich Low_complexity Low_complexity 1 74 0 2089 122 0 0 chr3 152079675 152079994 -75444584 - L1PA16 LINE L1 -154 6012 5694 562 170 0 20 chr3 152080167 152080267 -75444311 - FLAM_A SINE Alu -13 129 32 2593 113 54 35 chr3 152080402 152080827 -75443751 + Tigger2a DNA MER2_type 1 433 -1 232 277 25 101 chr3 152081386 152081505 -75443073 - L2 LINE L2 -1 3312 3203 404 275 84 28 chr3 152081649 152081827 -75442751 - MLT1J2 LTR MaLR 0 450 263 260 267 95 19 chr3 152081889 152081994 -75442584 - MLT1J LTR MaLR -313 198 86 379 255 49 10 chr3 152082499 152082601 -75441977 + MER91C DNA MER1_type 1 106 -34 274 188 0 116 chr3 152082948 152083017 -75441561 + MIR3 SINE MIR 108 168 -40 493 262 25 4 chr3 152083089 152083220 -75441358 - MER2 DNA MER2_type -97 142 1 * 850 188 6 6 chr3 152083220 152083388 -75441190 - MER2 DNA MER2_type -177 168 1 402 304 48 68 chr3 152083445 152083652 -75440926 + MIR3 SINE MIR 6 208 0 766 212 0 0 chr3 152084282 152084414 -75440164 + FLAM_C SINE Alu 2 133 0 683 294 36 90 chr3 152084508 152084919 -75439659 + L1MEd LINE L1 435 823 -5296 1648 253 102 12 chr3 152084924 152085490 -75439088 - MLT1G3 LTR MaLR 0 530 1 849 303 81 29 chr3 152085563 152085932 -75438646 + L1MEd LINE L1 925 1340 -4970 2100 132 0 22 chr3 152085932 152086251 -75438327 + AluSx SINE Alu 1 312 0 849 303 81 29 chr3 152086251 152086499 -75438079 + L1MEd LINE L1 1340 1574 -4736 395 289 119 62 chr3 152086671 152087073 -75437505 + L1MEd LINE L1 1736 2160 -3969 266 333 0 9 chr3 152087076 152087187 -75437391 + L1MEd LINE L1 3605 3714 -2415 2312 145 52 0 chr3 152088233 152088578 -75436000 + MLT1A1 LTR MaLR 1 363 -2 419 267 55 42 chr3 152089692 152089857 -75434721 - MIR SINE MIR -94 168 2 1260 282 103 26 chr3 152090387 152091154 -75433424 - L2 LINE L2 -1 3312 2479 25 31 0 0 chr3 152092555 152092587 -75431991 + AT_rich Low_complexity Low_complexity 1 32 0 275 274 105 21 chr3 152092927 152093022 -75431556 - L2 LINE L2 -21 3251 3149 943 253 58 55 chr3 152094251 152094543 -75430035 + AluJo SINE Alu 1 293 -9 209 329 0 14 chr3 152094978 152095051 -75429527 + MIR SINE MIR 129 200 -62 328 185 37 47 chr3 152095055 152095161 -75429417 - LTR33A LTR ERVL -2 535 445 237 331 30 68 chr3 152096533 152096629 -75427949 + MER5B DNA MER1_type 29 120 -58 896 228 35 15 chr3 152096629 152096831 -75427747 + MER6B DNA MER2_type 5 210 0 237 331 30 68 chr3 152096831 152096867 -75427711 + MER5B DNA MER1_type 120 156 -22 2310 68 0 32 chr3 152097018 152097328 -75427250 + AluY SINE Alu 1 300 -11 643 236 64 123 chr3 152097386 152097712 -75426866 - L2 LINE L2 -1 3271 2965 2256 207 90 22 chr3 152097750 152098252 -75426326 - MLT1F LTR MaLR -6 536 1 198 294 164 46 chr3 152098276 152098538 -75426040 - L2 LINE L2 -460 2854 2562 384 250 10 10 chr3 152098553 152098649 -75425929 + MER5A DNA MER1_type 10 105 -84 792 254 22 22 chr3 152100376 152100608 -75423970 + L2 LINE L2 3078 3309 -4 276 359 72 30 chr3 152100618 152100785 -75423793 - MIR3 SINE MIR -31 177 4 384 40 0 0 chr3 152101025 152101075 -75423503 + (CA)n Simple_repeat Simple_repeat 2 51 0 236 328 0 0 chr3 152102247 152102308 -75422270 - L2 LINE L2 -195 3077 3017 360 0 0 0 chr3 152102503 152102543 -75422035 + (TG)n Simple_repeat Simple_repeat 2 41 0 413 298 73 7 chr3 152102635 152102786 -75421792 - MIR3 SINE MIR -4 204 44 296 264 58 0 chr3 152102915 152103002 -75421576 - MIR3 SINE MIR -16 192 101 639 257 51 6 chr3 152103010 152103185 -75421393 + MER20B DNA MER1_type 7 189 -594 376 276 188 16 chr3 152104155 152104347 -75420231 - MIR SINE MIR -30 232 8 329 322 98 14 chr3 152105095 152105238 -75419340 + MIR3 SINE MIR 15 169 -39 1380 173 96 20 chr3 152105241 152105542 -75419036 - MER33 DNA MER1_type 0 324 1 925 237 95 10 chr3 152105583 152105887 -75418691 - MER46C DNA MER2_type -8 330 1 651 171 196 0 chr3 152106098 152106256 -75418322 - MER53 DNA DNA 0 189 1 1276 212 136 27 chr3 152107034 152107456 -75417122 + L1MC4 LINE L1 7456 8041 -1 321 284 69 9 chr3 152107662 152107778 -75416800 + MIR SINE MIR 101 223 -39 333 324 89 12 chr3 152108233 152108406 -75416172 + MIR3 SINE MIR 9 196 -55 2213 141 11 31 chr3 152108410 152108764 -75415814 - MER7A DNA MER2_type 0 346 2 304 123 96 82 chr3 152108831 152108904 -75415674 + MER5A DNA MER1_type 33 106 -83 227 277 0 0 chr3 152109702 152109749 -75414829 + L2 LINE L2 3215 3261 -11 2296 254 55 10 chr3 152110559 152111082 -75413496 - MLT1H LTR MaLR 0 549 3 376 325 8 0 chr3 152111628 152111754 -75412824 + MIR3 SINE MIR 54 180 -28 2563 66 0 0 chr3 152111821 152112125 -75412453 + AluY SINE Alu 1 304 -7 315 279 30 70 chr3 152112700 152112901 -75411677 + L1MC4a LINE L1 5698 5890 -1918 28 19 0 56 chr3 152113061 152113115 -75411463 + AT_rich Low_complexity Low_complexity 1 51 0 419 208 0 0 chr3 152113723 152113800 -75410778 - MER3 DNA MER1_type -97 112 36 389 147 496 35 chr3 152114888 152115031 -75409547 + MER3 DNA MER1_type 1 209 0 38027 87 10 16 chr3 152116534 152119849 -75404729 - L1PA6 LINE L1 -5 6149 2892 2530 19 0 34 chr3 152119849 152120171 -75404407 - AluYa5 SINE Alu 0 311 1 38027 87 10 16 chr3 152120171 152123035 -75401543 - L1PA6 LINE L1 -3262 2892 11 518 230 98 69 chr3 152123059 152123333 -75401245 - L1MC4 LINE L1 -211 7831 7550 2231 74 42 0 chr3 152123376 152123659 -75400919 - AluY SINE Alu -16 295 1 22 0 0 0 chr3 152123659 152123681 -75400897 + AT_rich Low_complexity Low_complexity 1 22 0 610 244 57 10 chr3 152123724 152123933 -75400645 - L1MC4 LINE L1 -528 7514 7296 664 316 46 9 chr3 152125124 152125342 -75399236 + MIR SINE MIR 37 262 0 236 268 73 37 chr3 152125383 152125465 -75399113 - MIR SINE MIR -109 153 69 683 312 46 9 chr3 152126360 152126578 -75398000 + MIR SINE MIR 37 262 0 250 256 73 37 chr3 152126619 152126701 -75397877 - MIR SINE MIR -109 153 69 798 281 4 22 chr3 152129123 152129354 -75395224 - L2 LINE L2 -5 3308 3082 334 308 75 31 chr3 152129796 152129955 -75394623 - MIR SINE MIR -72 190 25 438 194 39 31 chr3 152130022 152130151 -75394427 + L1MC5 LINE L1 7393 7522 -439 1062 154 55 0 chr3 152130162 152130344 -75394234 + L1PB2 LINE L1 1 192 -6671 14701 156 34 30 chr3 152130349 152131404 -75393174 + L1PB2 LINE L1 645 1695 -5172 879 103 35 0 chr3 152131404 152131520 -75393058 + FLAM_C SINE Alu 1 120 -23 14701 156 34 30 chr3 152131520 152136561 -75388017 + L1PB2 LINE L1 1695 6866 -1 2336 120 0 0 chr3 152136792 152137092 -75387486 - AluSg SINE Alu -10 300 1 640 218 144 45 chr3 152137580 152137782 -75386796 + MER58A DNA MER1_type 1 222 -2 419 206 10 10 chr3 152137887 152137989 -75386589 + MER103 DNA DNA 54 155 -11 308 287 155 66 chr3 152138068 152138249 -75386329 + L1MC4a LINE L1 5857 6053 -1755 2641 200 29 31 chr3 152138364 152138984 -75385594 + L1ME1 LINE L1 5543 6161 -5 577 298 35 6 chr3 152139890 152140061 -75384517 + MIR SINE MIR 20 195 -67 880 261 235 22 chr3 152140069 152140559 -75384019 - MLT1G1 LTR MaLR -1 594 1 578 258 86 7 chr3 152141817 152141968 -75382610 - MER5A DNA MER1_type -1 188 26 1942 158 24 3 chr3 152142030 152142328 -75382250 - AluJo SINE Alu -8 304 1 917 150 212 29 chr3 152142358 152142632 -75381946 - MER33 DNA MER1_type 0 324 1 993 239 27 0 chr3 152142640 152142862 -75381716 - MIR SINE MIR -21 241 14 194 246 58 29 chr3 152142921 152142990 -75381588 + L2 LINE L2 3201 3271 -1 21 0 0 0 chr3 152143089 152143110 -75381468 + AT_rich Low_complexity Low_complexity 1 21 0 1153 291 22 45 chr3 152143391 152143835 -75380743 - LTR16A LTR ERVL 0 450 17 287 296 212 6 chr3 152144627 152144806 -75379772 + MIR SINE MIR 41 256 -6 257 138 86 0 chr3 152145388 152145446 -75379132 + MIR SINE MIR 159 221 -41 2538 158 33 16 chr3 152145447 152145896 -75378682 - LTR32 LTR ERVL 0 471 15 247 91 0 0 chr3 152145896 152145929 -75378649 + L2 LINE L2 3263 3295 -18 201 133 0 0 chr3 152147258 152147288 -75377290 + (CA)n Simple_repeat Simple_repeat 2 31 0 197 290 32 0 chr3 152147437 152147499 -75377079 - L2 LINE L2 -9 3304 3241 403 261 110 50 chr3 152147571 152147789 -75376789 - MIR SINE MIR -23 239 9 2592 179 43 16 chr3 152148593 152149153 -75375425 - L1MC3 LINE L1 -1 7784 7210 351 0 0 0 chr3 152149510 152149549 -75375029 + (TG)n Simple_repeat Simple_repeat 1 39 0 1834 274 61 18 chr3 152149814 152150384 -75374194 - MLT1G1 LTR MaLR 0 595 1 275 327 135 13 chr3 152150414 152150570 -75374008 - L2 LINE L2 -2 3270 3096 230 302 0 30 chr3 152150894 152150971 -75373607 + MIR SINE MIR 37 109 -100 1855 138 67 0 chr3 152151701 152151983 -75372595 + AluJo SINE Alu 1 301 -11 464 0 18 0 chr3 152151985 152152041 -75372537 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 479 253 51 63 chr3 152152062 152152220 -75372358 + MIR3 SINE MIR 28 183 -25 877 236 157 43 chr3 152152379 152152872 -75371706 - MLT1G1 LTR MaLR 0 595 5 349 260 59 69 chr3 152152972 152153176 -75371402 + L1MCa LINE L1 1864 2065 -4361 1001 266 9 0 chr3 152153504 152153737 -75370841 + MIR SINE MIR 1 235 -27 465 288 53 0 chr3 152154377 152154509 -75370069 + MIR3 SINE MIR 52 190 -18 212 302 91 87 chr3 152154592 152154890 -75369688 + L3b LINE CR1 1209 1507 -76 1976 151 46 49 chr3 152155451 152155842 -75368736 - MLT1B LTR MaLR 0 390 1 216 305 107 53 chr3 152156061 152156192 -75368386 + MIR SINE MIR 11 148 -114 2018 120 3 109 chr3 152156293 152156669 -75367909 + MER1B DNA MER1_type 1 336 -1 22 0 0 0 chr3 152157381 152157403 -75367175 + AT_rich Low_complexity Low_complexity 1 22 0 476 322 35 25 chr3 152159935 152160137 -75364441 - MIR3 SINE MIR -2 206 3 219 218 23 46 chr3 152160230 152160317 -75364261 + CT-rich Low_complexity Low_complexity 5 89 0 375 337 126 47 chr3 152160695 152161476 -75363102 - L3 LINE CR1 -67 1510 669 251 229 73 73 chr3 152161890 152161986 -75362592 - MIR SINE MIR -59 149 54 241 286 0 0 chr3 152162008 152162057 -75362521 - L2 LINE L2 -19 3253 3205 212 360 13 0 chr3 152162229 152162304 -75362274 - L3 LINE CR1 -914 663 588 251 319 76 17 chr3 152164299 152164418 -75360160 + MIR SINE MIR 19 144 -118 1209 254 71 3 chr3 152164430 152164741 -75359837 - LTR16B LTR ERVL 0 464 133 425 310 117 14 chr3 152165365 152165578 -75359000 + MIR SINE MIR 1 235 -27 347 279 68 3 chr3 152165753 152165905 -75358673 - MIR SINE MIR -6 256 47 332 281 62 39 chr3 152166109 152166237 -75358341 + MIR SINE MIR 23 153 -55 285 269 45 21 chr3 152166253 152166429 -75358149 - MIR SINE MIR -13 249 15 413 255 35 14 chr3 152166844 152166985 -75357593 + MIR3 SINE MIR 15 158 -50 182 289 48 36 chr3 152167673 152167756 -75356822 + MIR SINE MIR 41 124 -84 2319 98 6 19 chr3 152167976 152168291 -75356287 + AluSx SINE Alu 1 311 -1 561 278 49 0 chr3 152168319 152168481 -75356097 + MIR SINE MIR 83 252 -10 198 0 0 0 chr3 152168495 152168517 -75356061 + (ATG)n Simple_repeat Simple_repeat 2 23 0 383 257 299 7 chr3 152168998 152169142 -75355436 + MER5A DNA MER1_type 4 189 0 195 256 0 0 chr3 152169174 152169213 -75355365 - L2 LINE L2 -12 3260 3222 315 291 25 0 chr3 152169500 152169579 -75354999 - MIR SINE MIR -162 100 20 658 293 33 66 chr3 152169968 152170410 -75354168 + L2 LINE L2 2647 3081 -191 1422 289 147 10 chr3 152170513 152170720 -75353858 + L2 LINE L2 1893 2070 -1243 2269 112 0 28 chr3 152170720 152171041 -75353537 - AluSx SINE Alu 0 312 1 1422 289 147 10 chr3 152171041 152172069 -75352509 + L2 LINE L2 2070 3312 -1 212 299 15 0 chr3 152172078 152172145 -75352433 + L2 LINE L2 3231 3298 -15 217 171 73 0 chr3 152172992 152173074 -75351504 + CT-rich Low_complexity Low_complexity 5 92 0 25 51 0 0 chr3 152174606 152174645 -75349933 + AT_rich Low_complexity Low_complexity 1 39 0 21 0 0 0 chr3 152176220 152176241 -75348337 + AT_rich Low_complexity Low_complexity 1 21 0 268 246 0 14 chr3 152177247 152177316 -75347262 + MIR SINE MIR 55 122 -86 257 179 82 0 chr3 152178259 152178323 -75346255 + MIR3 SINE MIR 100 164 -47 408 290 94 54 chr3 152179294 152179518 -75345060 - MIR SINE MIR 0 262 30 750 164 79 0 chr3 152179670 152179847 -75344731 - MER3 DNA MER1_type 0 2582 2392 * 1136 135 10 30 chr3 152179845 152180045 -75344533 + MER3 DNA MER1_type 9 204 -5 340 238 13 0 chr3 152180853 152180942 -75343636 + MIR SINE MIR 65 153 -63 2360 107 0 7 chr3 152181216 152181525 -75343053 - AluSx SINE Alu -5 307 1 646 225 0 35 chr3 152182673 152182815 -75341763 - AluJo SINE Alu -58 254 118 317 222 161 0 chr3 152182815 152182896 -75341682 + MER45C DNA AcHobo 133 226 -727 1187 235 77 12 chr3 152182977 152183374 -75341204 + MER45C DNA AcHobo 473 952 -1 2184 103 26 26 chr3 152184533 152184843 -75339735 - AluSx SINE Alu -2 310 1 413 248 64 35 chr3 152185099 152185240 -75339338 + MIR SINE MIR 20 164 -98 400 300 188 21 chr3 152185248 152185506 -75339072 + L1MC4a LINE L1 4026 4325 -1821 948 183 6 6 chr3 152185512 152185681 -75338897 + AluJb SINE Alu 137 305 -7 684 212 8 0 chr3 152185685 152185817 -75338761 + FLAM_A SINE Alu 1 133 0 888 315 46 39 chr3 152185843 152186697 -75337881 + L1MC4a LINE L1 4359 5233 -913 1452 257 83 50 chr3 152186717 152187811 -75336767 + L1MC4a LINE L1 5256 6449 -1359 270 0 0 0 chr3 152187811 152187841 -75336737 + (TG)n Simple_repeat Simple_repeat 2 31 0 1452 257 83 50 chr3 152187841 152188307 -75336271 + L1MC4a LINE L1 6449 6898 -910 1201 193 47 66 chr3 152189713 152190201 -75334377 + L1MC5 LINE L1 6906 7384 -577 1196 238 50 46 chr3 152190319 152190862 -75333716 + L1MC5 LINE L1 7372 7916 -45 285 230 162 14 chr3 152190877 152190951 -75333627 + MIR SINE MIR 157 241 -21 181 250 45 0 chr3 152192204 152192248 -75332330 + L2 LINE L2 1175 1220 -2094 423 208 10 78 chr3 152192609 152192801 -75331777 + C-rich Low_complexity Low_complexity 1 179 0 305 308 23 10 chr3 152192819 152193057 -75331521 + CT-rich Low_complexity Low_complexity 1 241 0 266 280 51 13 chr3 152193049 152193206 -75331372 + (CTACT)n Simple_repeat Simple_repeat 4 166 0 * 406 250 23 28 chr3 152193130 152193306 -75331272 + CT-rich Low_complexity Low_complexity 3 177 0 374 223 16 65 chr3 152193460 152193714 -75330864 + C-rich Low_complexity Low_complexity 1 241 0 367 272 17 28 chr3 152193689 152193869 -75330709 + CT-rich Low_complexity Low_complexity 2 179 0 * 399 237 35 23 chr3 152193895 152194106 -75330472 + CT-rich Low_complexity Low_complexity 1 213 0 366 269 16 39 chr3 152194112 152194294 -75330284 + C-rich Low_complexity Low_complexity 2 179 0 442 304 14 17 chr3 152194329 152194574 -75330004 + CT-rich Low_complexity Low_complexity 1 244 0 272 279 13 44 chr3 152194515 152194673 -75329905 + C-rich Low_complexity Low_complexity 4 156 0 * 432 260 3 63 chr3 152194633 152194869 -75329709 + CT-rich Low_complexity Low_complexity 1 221 0 232 163 23 0 chr3 152195350 152195393 -75329185 - MER90 LTR ERV1 -2 612 569 2114 165 18 13 chr3 152195611 152195999 -75328579 - MLT1B LTR MaLR 0 390 1 227 61 0 30 chr3 152195999 152196032 -75328546 - MIR SINE MIR -118 144 113 1563 258 76 22 chr3 152196765 152197303 -75327275 - MER90 LTR ERV1 -8 567 1 329 280 42 25 chr3 152197630 152197748 -75326830 + MIR SINE MIR 87 206 -56 * 355 333 33 0 chr3 152197747 152197867 -75326711 + L2 LINE L2 3190 3313 0 2050 189 78 11 chr3 152197906 152198344 -75326234 - MLT1C LTR MaLR 0 467 1 2317 83 0 0 chr3 152198501 152198801 -75325777 + AluSc SINE Alu 1 300 -9 503 198 0 0 chr3 152198903 152198989 -75325589 + MIR3 SINE MIR 69 154 -54 204 319 74 22 chr3 152199076 152199211 -75325367 + MIR3 SINE MIR 33 174 -34 262 165 25 13 chr3 152199784 152199863 -75324715 + GA-rich Low_complexity Low_complexity 3 82 0 652 333 123 4 chr3 152199880 152200108 -75324470 + MIR SINE MIR 1 255 -7 234 164 0 55 chr3 152200206 152200261 -75324317 + G-rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr3 152200725 152200746 -75323832 + GC_rich Low_complexity Low_complexity 1 21 0 1767 88 20 81 chr3 152200747 152201042 -75323536 - AluSg SINE Alu -33 277 1 241 328 127 4 chr3 152201134 152201263 -75323315 + MIR SINE MIR 29 147 -61 1927 131 6 6 chr3 152201296 152201608 -75322970 - AluSx SINE Alu 0 312 1 226 234 0 0 chr3 152201848 152201895 -75322683 - L2 LINE L2 -6 3307 3261 201 186 0 114 chr3 152201988 152202058 -75322520 - L2 LINE L2 -31 3241 3180 320 278 155 20 chr3 152204959 152205105 -75319473 - MIR SINE MIR -58 150 31 882 257 18 9 chr3 152205495 152205717 -75318861 - MIR SINE MIR -13 249 26 350 264 62 8 chr3 152205812 152205941 -75318637 - LTR16A1 LTR ERVL -4 453 318 1788 184 37 17 chr3 152206881 152207235 -75317343 - MLT2D LTR ERVL 0 414 54 385 115 0 51 chr3 152207327 152207392 -75317186 - HSMAR2 DNA Mariner -1 1301 1239 6347 20 8 0 chr3 152207392 152208132 -75316446 - L1PA4 LINE L1 0 6155 5410 385 115 0 51 chr3 152208132 152208144 -75316434 - HSMAR2 DNA Mariner -63 1239 1228 16059 99 11 11 chr3 152208144 152210464 -75314114 + HERVH LTR ERV1 970 3290 -4423 3459 107 4 6 chr3 152210454 152210957 -75313621 + HERVH LTR ERV1 3492 3993 -3720 * 3063 143 2 2 chr3 152210959 152211576 -75313002 + HERVH LTR ERV1 4488 5149 -2564 1170 103 17 0 chr3 152211577 152211751 -75312827 + HERVH LTR ERV1 5600 5776 -1937 600 247 41 0 chr3 152211903 152212073 -75312505 - L1M4 LINE L1 -2644 3502 3326 329 241 170 45 chr3 152212171 152212322 -75312256 - MIR SINE MIR -27 181 3 406 295 36 0 chr3 152212344 152212456 -75312122 + MER5B DNA MER1_type 55 170 -8 649 271 114 44 chr3 152212582 152212925 -75311653 - MLT1H1 LTR MaLR -106 449 83 953 168 84 11 chr3 152212930 152213109 -75311469 - LTR32 LTR ERVL 0 471 280 298 161 125 0 chr3 152213109 152213165 -75311413 + AluJ/FLAM SINE Alu 5 67 -235 33 0 0 0 chr3 152213168 152213201 -75311377 + AT_rich Low_complexity Low_complexity 1 33 0 2104 103 3 0 chr3 152213218 152213508 -75311070 - AluSx SINE Alu -21 291 1 1445 160 72 19 chr3 152213511 152213773 -75310805 - LTR32 LTR ERVL -181 290 15 5167 38 0 0 chr3 152213830 152214432 -75310146 - L1PA3 LINE L1 0 6155 5554 2225 93 6 6 chr3 152214468 152214781 -75309797 + AluSp SINE Alu 1 313 0 580 96 43 9 chr3 152214796 152214911 -75309667 + GA-rich Low_complexity Low_complexity 2 120 0 323 304 140 70 chr3 152215341 152215470 -75309108 + HAL1 LINE L1 2225 2344 -163 2208 103 0 25 chr3 152215470 152215790 -75308788 + AluSx SINE Alu 1 312 0 323 304 140 70 chr3 152215790 152215917 -75308661 + HAL1 LINE L1 2344 2499 -8 263 215 147 55 chr3 152215959 152216122 -75308456 + L1MC5 LINE L1 7724 7901 -60 452 203 106 114 chr3 152216173 152216409 -75308169 + MIR SINE MIR 23 256 -6 506 312 125 32 chr3 152216575 152216950 -75307628 - L2 LINE L2 -1 3271 2862 190 133 0 67 chr3 152217114 152217174 -75307404 + (GA)n Simple_repeat Simple_repeat 2 57 0 2479 113 8 32 chr3 152217189 152217561 -75307017 - THE1B LTR MaLR -1 363 1 2077 70 22 0 chr3 152218264 152218537 -75306041 - AluSq SINE Alu -11 302 24 214 310 176 0 chr3 152218650 152218792 -75305786 - L2 LINE L2 -700 2614 2448 2027 274 128 58 chr3 152218885 152219347 -75305231 - L2 LINE L2 -2 3311 2883 1467 177 3 66 chr3 152219347 152219680 -75304898 - AluJo SINE Alu 0 312 1 2027 274 128 58 chr3 152219680 152220083 -75304495 - L2 LINE L2 -430 2883 2510 2027 109 7 7 chr3 152220083 152220385 -75304193 - AluSq SINE Alu -11 302 1 2027 274 128 58 chr3 152220385 152220859 -75303719 - L2 LINE L2 -803 2510 1858 246 62 0 0 chr3 152221321 152221353 -75303225 + (TA)n Simple_repeat Simple_repeat 2 33 0 418 271 84 94 chr3 152221497 152221700 -75302878 - MIR SINE MIR -1 261 61 644 296 73 55 chr3 152221830 152222266 -75302312 + L2 LINE L2 2406 2849 -465 907 192 33 22 chr3 152222560 152222742 -75301836 - MER5A DNA MER1_type -4 185 2 1833 142 71 12 chr3 152222753 152223078 -75301500 - MER2 DNA MER2_type 0 344 1 2022 137 0 0 chr3 152223364 152223664 -75300914 + AluSx SINE Alu 1 300 -12 648 0 0 0 chr3 152223796 152223868 -75300710 + (TA)n Simple_repeat Simple_repeat 1 72 0 280 189 176 0 chr3 152224062 152224136 -75300442 - MER3 DNA MER1_type -121 88 2 889 183 16 27 chr3 152224847 152225033 -75299545 - MER5A DNA MER1_type -4 185 2 633 223 54 12 chr3 152225043 152225209 -75299369 + MER5B DNA MER1_type 2 174 -4 280 334 172 22 chr3 152226197 152226511 -75298067 - L3b LINE CR1 -4 1579 1219 539 40 13 0 chr3 152226565 152226640 -75297938 - L1PA3 LINE L1 -2 6153 6078 315 0 0 0 chr3 152226644 152226679 -75297899 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 1845 123 10 37 chr3 152226741 152227041 -75297537 + AluJb SINE Alu 2 293 -19 702 152 18 23 chr3 152227080 152227251 -75297327 + GA-rich Low_complexity Low_complexity 3 172 0 458 311 97 44 chr3 152227717 152227973 -75296605 + L1ME4a LINE L1 5390 5631 -490 2253 86 3 0 chr3 152227973 152228275 -75296303 + AluY SINE Alu 1 303 -8 458 311 97 44 chr3 152228275 152228507 -75296071 + L1ME4a LINE L1 5631 5849 -272 1144 242 5 0 chr3 152228507 152228730 -75295848 - MER58A DNA MER1_type 0 224 1 458 311 97 44 chr3 152228730 152228897 -75295681 + L1ME4a LINE L1 5849 6081 -40 566 237 158 13 chr3 152229152 152229304 -75295274 + MER5B DNA MER1_type 2 175 -3 515 247 80 33 chr3 152229715 152229865 -75294713 - MIR3 SINE MIR -35 173 17 732 253 118 40 chr3 152230534 152230942 -75293636 - LTR16C LTR ERVL 0 491 3 983 175 0 24 chr3 152231319 152231485 -75293093 + FAM SINE Alu 4 165 -10 1692 178 98 26 chr3 152231508 152231896 -75292682 - MER21B LTR ERV1 -53 810 395 3470 100 38 13 chr3 152231907 152232439 -75292139 - Tigger3b DNA MER2_type -535 696 152 819 219 146 0 chr3 152232437 152232629 -75291949 - MLT1E1 LTR MaLR -126 528 309 * 591 218 48 15 chr3 152232631 152232825 -75291753 - MLT1E1 LTR MaLR -410 244 3 1804 161 3 16 chr3 152233610 152233914 -75290664 + AluJo SINE Alu 4 303 -9 283 200 129 35 chr3 152233915 152234000 -75290578 + MER3 DNA MER1_type 117 209 0 974 287 33 45 chr3 152234701 152234770 -75289808 - L1ME4a LINE L1 -266 5855 5787 1227 207 9 0 chr3 152234770 152234992 -75289586 + MER58A DNA MER1_type 1 224 0 974 287 33 45 chr3 152234992 152235330 -75289248 - L1ME4a LINE L1 -334 5787 5462 2144 107 0 7 chr3 152235554 152235864 -75288714 + AluSx SINE Alu 1 308 -4 1660 173 10 23 chr3 152236200 152236506 -75288072 + AluJo SINE Alu 1 302 -10 256 190 35 35 chr3 152237042 152237100 -75287478 + L2 LINE L2 3205 3262 -10 217 330 51 42 chr3 152237082 152237200 -75287378 - L2 LINE L2 -9 3263 3145 * 877 269 58 0 chr3 152237464 152237672 -75286906 - MIR SINE MIR -31 231 12 822 176 0 0 chr3 152237728 152237853 -75286725 - FLAM_C SINE Alu -18 125 1 954 213 134 7 chr3 152239014 152239319 -75285259 - MER113 DNA MER1_type? -16 505 162 287 159 63 0 chr3 152239843 152239906 -75284672 + MER63 DNA MER1_type 4 70 -991 21 0 0 0 chr3 152239956 152239977 -75284601 + AT_rich Low_complexity Low_complexity 1 21 0 4381 112 27 28 chr3 152240172 152240321 -75284257 - MER50 LTR ERV1 -23 711 563 2157 102 0 3 chr3 152240321 152240625 -75283953 + AluSp SINE Alu 1 303 -10 4381 112 27 28 chr3 152240625 152241181 -75283397 - MER50 LTR ERV1 -171 563 7 626 214 0 0 chr3 152241210 152241322 -75283256 + MER63 DNA MER1_type 950 1061 0 895 250 82 8 chr3 152241567 152241811 -75282767 + MIR SINE MIR 1 262 0 181 235 39 128 chr3 152242098 152242200 -75282378 - MIR SINE MIR -80 128 36 2168 91 13 10 chr3 152242293 152242602 -75281976 - AluSx SINE Alu -2 310 1 876 272 79 38 chr3 152242967 152243334 -75281244 + L1MC4a LINE L1 5453 5841 -1967 554 138 0 0 chr3 152243334 152243414 -75281164 - MADE1 DNA Mariner 0 80 1 876 272 79 38 chr3 152243414 152243465 -75281113 + L1MC4a LINE L1 5841 5888 -1920 23 0 0 0 chr3 152243477 152243500 -75281078 + AT_rich Low_complexity Low_complexity 1 23 0 2151 87 27 10 chr3 152243693 152243993 -75280585 + AluSx SINE Alu 1 305 -7 1090 223 133 70 chr3 152244429 152244859 -75279719 + LTR16A1 LTR ERVL 1 457 0 42 20 0 0 chr3 152244906 152244955 -75279623 + AT_rich Low_complexity Low_complexity 1 49 0 280 284 0 59 chr3 152245267 152245369 -75279209 + MIR SINE MIR 110 205 -57 256 295 74 49 chr3 152245393 152245515 -75279063 - L2 LINE L2 -18 3295 3171 191 250 187 56 chr3 152245522 152245648 -75278930 + MIR SINE MIR 7 147 -62 773 294 179 30 chr3 152245677 152246136 -75278442 - MLT1G1 LTR MaLR -41 554 28 507 229 17 8 chr3 152246162 152246280 -75278298 + MIR SINE MIR 144 262 0 954 168 4 55 chr3 152247155 152247393 -75277185 + AluSq SINE Alu 69 294 -19 21 0 0 0 chr3 152247426 152247447 -75277131 + AT_rich Low_complexity Low_complexity 1 21 0 1757 134 0 18 chr3 152247612 152247896 -75276682 - AluJo SINE Alu -7 305 27 35 24 0 0 chr3 152247933 152247975 -75276603 + AT_rich Low_complexity Low_complexity 1 42 0 1997 90 36 4 chr3 152247996 152248321 -75276257 - AluSq SINE Alu 0 334 1 237 328 72 26 chr3 152248341 152248536 -75276042 + HAL1b LINE L1 97 300 -1048 1014 124 0 0 chr3 152248545 152248690 -75275888 - AluSq/x SINE Alu -165 147 3 751 251 52 46 chr3 152248692 152249038 -75275540 + HAL1b LINE L1 776 1123 -225 764 198 0 0 chr3 152249043 152249169 -75275409 + FLAM_C SINE Alu 1 126 -17 1649 155 9 46 chr3 152249173 152249496 -75275082 + AluJb SINE Alu 1 311 -1 1889 180 11 21 chr3 152249549 152249922 -75274656 - L1MC4 LINE L1 -251 7791 7423 2644 189 99 51 chr3 152250374 152250397 -75274181 + L1MC4 LINE L1 7049 7069 -973 428 0 19 0 chr3 152250397 152250449 -75274129 + (CA)n Simple_repeat Simple_repeat 2 54 0 2644 189 99 51 chr3 152250449 152250467 -75274111 + L1MC4 LINE L1 7069 7085 -957 2182 88 3 0 chr3 152250467 152250777 -75273801 - AluSp SINE Alu 0 311 1 2644 189 99 51 chr3 152250777 152251215 -75273363 + L1MC4 LINE L1 7085 7576 -466 1934 218 15 24 chr3 152251215 152251682 -75272896 + MLT1C LTR MaLR 5 467 0 2644 189 99 51 chr3 152251682 152251899 -75272679 + L1MC4 LINE L1 7576 7781 -261 1342 192 11 0 chr3 152251998 152252259 -75272319 - L1PA13 LINE L1 -3487 3310 3047 5570 207 23 21 chr3 152252273 152252375 -75272203 - L1PA13 LINE L1 -4193 2604 2504 2011 134 10 0 chr3 152252375 152252682 -75271896 - AluSx SINE Alu -2 310 1 5570 207 23 21 chr3 152252682 152254080 -75270498 - L1PA13 LINE L1 -4293 2504 1096 24 0 0 0 chr3 152254106 152254130 -75270448 + AT_rich Low_complexity Low_complexity 1 24 0 593 148 16 0 chr3 152255987 152256099 -75268479 + L1MC4 LINE L1 7877 8042 0 1465 302 89 25 chr3 152256109 152256828 -75267750 - HERVL LTR ERVL -2592 3062 2298 182 256 0 0 chr3 152256861 152256900 -75267678 + MIR SINE MIR 223 261 -1 339 299 10 0 chr3 152256977 152257074 -75267504 + HsTC2 DNA Tc2 2 99 -1799 528 163 65 105 chr3 152257136 152257246 -75267332 + MER69 DNA AcHobo 1 105 -1121 1581 163 31 17 chr3 152257246 152257534 -75267044 - AluSx SINE Alu -20 292 1 528 163 65 105 chr3 152257534 152257576 -75267002 + MER69 DNA AcHobo 105 147 -1079 252 214 36 0 chr3 152257571 152257627 -75266951 + MER69 DNA AcHobo 2449 2506 -20 * 437 215 0 13 chr3 152257660 152257739 -75266839 + Tigger5 DNA MER2_type 1 78 -2245 373 197 14 0 chr3 152257767 152257838 -75266740 + Tigger5 DNA MER2_type 2252 2323 0 250 284 0 0 chr3 152258099 152258166 -75266412 + HsTC2 DNA Tc2 1826 1892 -6 673 207 0 21 chr3 152258332 152258344 -75266234 - AluJ SINE Alu -4 308 297 2086 121 0 0 chr3 152258344 152258649 -75265929 - AluSg SINE Alu -5 305 1 673 207 0 21 chr3 152258649 152258776 -75265802 - AluJ SINE Alu -15 297 172 5119 158 346 21 chr3 152258776 152260089 -75264489 + MER52A LTR ERV1 2 1741 -14 513 108 0 128 chr3 152260089 152260122 -75264456 + 5S rRNA rRNA 2 38 -83 2629 29 0 3 chr3 152260122 152260433 -75264145 - AluY SINE Alu -1 310 1 513 108 0 128 chr3 152260433 152260501 -75264077 + 5S rRNA rRNA 38 90 -31 974 166 0 28 chr3 152260531 152260712 -75263866 - AluJ SINE Alu -136 176 1 7147 147 26 18 chr3 152260712 152262329 -75262249 + L1MA4 LINE L1 4087 5689 -482 1970 131 20 0 chr3 152262329 152262627 -75261951 + AluSx SINE Alu 1 304 -8 7147 147 26 18 chr3 152262627 152262988 -75261590 + L1MA4 LINE L1 5689 6122 -49 2308 87 3 0 chr3 152262988 152263298 -75261280 + AluY SINE Alu 1 311 0 7147 147 26 18 chr3 152263298 152263349 -75261229 + L1MA4 LINE L1 6122 6171 0 7321 44 7 2 chr3 152263359 152264789 -75259789 - L1PA6 LINE L1 -21 6133 4698 342 245 38 162 chr3 152266345 152266635 -75257943 - L2 LINE L2 -76 3196 2943 221 348 88 48 chr3 152266737 152267387 -75257191 - L2 LINE L2 -557 2757 2082 338 231 9 37 chr3 152267625 152267733 -75256845 + CT-rich Low_complexity Low_complexity 5 109 0 21 0 0 0 chr3 152268352 152268373 -75256205 + AT_rich Low_complexity Low_complexity 1 21 0 180 267 0 0 chr3 152268392 152268452 -75256126 + (TA)n Simple_repeat Simple_repeat 1 60 0 704 158 0 72 chr3 152268566 152268705 -75255873 - FLAM_A SINE Alu -1 132 4 180 242 264 11 chr3 152268705 152268796 -75255782 + MER5A DNA MER1_type 45 158 -31 * 566 186 20 0 chr3 152268728 152268830 -75255748 - MER5A DNA MER1_type -77 112 9 499 255 102 107 chr3 152268851 152269047 -75255531 - MLT1L LTR MaLR -86 482 231 189 0 0 0 chr3 152269055 152269076 -75255502 + (A)n Simple_repeat Simple_repeat 1 21 0 3534 8 0 0 chr3 152269079 152269460 -75255118 - SVA Other Other -5 1381 1001 264 206 73 29 chr3 152269489 152269557 -75255021 - MLT1L LTR MaLR -328 287 217 * 381 211 0 13 chr3 152269536 152269612 -75254966 - MLT1J LTR MaLR -338 173 99 441 280 30 54 chr3 152269868 152270036 -75254542 - MIR3 SINE MIR -32 176 13 346 288 98 24 chr3 152270287 152270492 -75254086 - MIR SINE MIR -23 239 20 2150 100 7 0 chr3 152271736 152272037 -75252541 + AluSg SINE Alu 1 303 -7 695 245 41 41 chr3 152273081 152273326 -75251252 + L1M4 LINE L1 3422 3666 -2480 1572 183 10 7 chr3 152273339 152273640 -75250938 + AluJo SINE Alu 1 302 -10 409 228 109 11 chr3 152274023 152274207 -75250371 - L1MC5 LINE L1 -52 7909 7708 981 186 51 0 chr3 152274208 152274385 -75250193 - MER20 DNA MER1_type -4 215 30 308 206 43 65 chr3 152274419 152274489 -75250089 - L1MC5 LINE L1 -243 7718 7649 2137 99 7 3 chr3 152274489 152274781 -75249797 - AluSx SINE Alu -19 293 1 308 206 43 65 chr3 152274781 152274802 -75249776 - L1MC5 LINE L1 -312 7649 7629 295 305 12 0 chr3 152274820 152274902 -75249676 + MER117 DNA MER1_type 46 128 -69 641 201 0 45 chr3 152274902 152275036 -75249542 - FLAM_C SINE Alu -14 129 2 875 297 107 13 chr3 152275251 152275645 -75248933 + L1ME4a LINE L1 5492 5922 -199 272 249 63 63 chr3 152275731 152275901 -75248677 + L1ME4a LINE L1 5901 6074 -47 2031 104 0 14 chr3 152275901 152276213 -75248365 - AluSx SINE Alu 0 308 1 272 249 63 63 chr3 152276213 152276246 -75248332 + L1ME4a LINE L1 6073 6105 -16 2142 100 7 0 chr3 152276274 152276574 -75248004 - AluSp SINE Alu -11 302 1 486 200 0 0 chr3 152276613 152276708 -75247870 - MER53 DNA DNA -94 95 1 186 133 0 0 chr3 152276891 152276921 -75247657 + (CACCAT)n Simple_repeat Simple_repeat 2 31 0 303 252 156 15 chr3 152277606 152277741 -75246837 + L1M4 LINE L1 3047 3200 -2946 390 196 163 0 chr3 152277741 152277833 -75246745 - MIR SINE MIR -109 153 47 1236 254 137 27 chr3 152278121 152278566 -75246012 - MLT1G LTR MaLR 0 590 97 1452 165 13 36 chr3 152278566 152278869 -75245709 + AluJo SINE Alu 1 296 -16 463 155 74 74 chr3 152279880 152279934 -75244644 - MLT2E LTR ERVL -2 626 573 2148 109 0 3 chr3 152279934 152280236 -75244342 + AluSq SINE Alu 1 301 -12 463 155 74 74 chr3 152280236 152280329 -75244249 - MLT2E LTR ERVL -54 574 479 1336 235 62 7 chr3 152280370 152280676 -75243902 - MLT2E LTR ERVL -254 374 52 1888 113 3 45 chr3 152280676 152280968 -75243610 + AluSq SINE Alu 1 280 -33 960 104 0 35 chr3 152280970 152281143 -75243435 + (GGAA)n Simple_repeat Simple_repeat 3 169 0 2457 71 0 0 chr3 152281144 152281454 -75243124 + AluY SINE Alu 1 310 -1 802 144 11 17 chr3 152281454 152281628 -75242950 + GA-rich Low_complexity Low_complexity 2 174 0 442 152 15 0 chr3 152281628 152281694 -75242884 - MLT2E LTR ERVL -561 67 1 814 74 0 19 chr3 152282098 152282206 -75242372 - FRAM SINE Alu -31 145 40 580 243 79 90 chr3 152282335 152282744 -75241834 + MLT1L LTR MaLR 2 463 -152 1832 131 3 3 chr3 152282769 152283051 -75241527 - AluSx SINE Alu -30 282 1 1899 174 31 17 chr3 152283166 152283522 -75241056 + MLT1A2 LTR MaLR 1 361 -13 850 283 33 12 chr3 152283558 152283798 -75240780 - MIR SINE MIR -3 259 15 195 279 190 0 chr3 152283802 152283881 -75240697 + L2 LINE L2 3143 3236 -36 188 252 103 47 chr3 152283887 152283994 -75240584 - MIR SINE MIR -12 250 138 260 269 26 0 chr3 152284156 152284234 -75240344 - L1M4 LINE L1 -2752 3394 3315 1989 145 3 0 chr3 152284243 152284547 -75240031 - AluSx SINE Alu -7 305 1 2230 119 0 0 chr3 152284557 152284868 -75239710 - AluSx SINE Alu -1 311 1 540 317 30 15 chr3 152285373 152285575 -75239003 + MIR SINE MIR 2 206 -56 719 173 0 115 chr3 152285580 152285650 -75238928 + MER5A DNA MER1_type 2 46 -143 1479 206 3 17 chr3 152285650 152285942 -75238636 - AluJb SINE Alu -19 293 6 719 173 0 115 chr3 152285942 152286027 -75238551 + MER5A DNA MER1_type 46 139 -50 938 191 0 17 chr3 152286028 152286206 -75238372 - FRAM SINE Alu -1 175 1 270 233 0 0 chr3 152286212 152286272 -75238306 + MER5A DNA MER1_type 130 189 0 1963 129 0 23 chr3 152286282 152286585 -75237993 - AluSx SINE Alu -14 298 3 288 0 0 0 chr3 152287293 152287325 -75237253 + (TTTA)n Simple_repeat Simple_repeat 2 33 0 654 220 0 0 chr3 152287330 152287439 -75237139 - FLAM_A SINE Alu -33 109 1 1962 221 24 29 chr3 152287706 152287812 -75236766 + L1ME1 LINE L1 5713 5818 -348 2211 96 38 0 chr3 152287812 152288104 -75236474 - AluSx SINE Alu -9 303 1 1962 221 24 29 chr3 152288104 152288449 -75236129 + L1ME1 LINE L1 5818 6162 -4 803 167 0 0 chr3 152289431 152289551 -75235027 + FRAM SINE Alu 33 152 -24 299 273 83 68 chr3 152289688 152289820 -75234758 - MIR SINE MIR -73 189 56 2267 104 0 3 chr3 152290252 152290551 -75234027 + AluSx SINE Alu 1 298 -14 351 0 0 0 chr3 152290590 152290629 -75233949 + (CA)n Simple_repeat Simple_repeat 2 40 0 567 251 64 5 chr3 152290657 152290844 -75233734 + L1MD3 LINE L1 7798 7995 0 1056 281 99 9 chr3 152291025 152291349 -75233229 + MLT1J2 LTR MaLR 24 376 -74 1899 158 0 3 chr3 152291349 152291646 -75232932 + AluSp SINE Alu 1 296 -17 618 291 50 18 chr3 152293151 152293371 -75231207 + MIR SINE MIR 23 249 -13 3954 165 21 21 chr3 152293914 152294630 -75229948 - Charlie1 DNA MER1_type -492 2269 1554 747 153 0 9 chr3 152294635 152294746 -75229832 - AluJb SINE Alu -178 134 25 2841 164 34 28 chr3 152294762 152294962 -75229616 + ERVL LTR ERVL 1408 1605 -4159 2049 107 40 23 chr3 152294962 152295262 -75229316 + AluSq SINE Alu 1 305 -8 2841 164 34 28 chr3 152295262 152295560 -75229018 + ERVL LTR ERVL 1605 1909 -3855 716 154 8 8 chr3 152297278 152297408 -75227170 + MER53 DNA DNA 1 130 -59 206 389 67 0 chr3 152298397 152298487 -75226091 - L2 LINE L2 -10 3303 3208 761 158 18 18 chr3 152298500 152298664 -75225914 - Charlie5 DNA MER1_type -28 2584 2421 2182 78 36 16 chr3 152298794 152299101 -75225477 - MLT2A1 LTR ERVL -131 313 1 22 0 0 0 chr3 152299138 152299160 -75225418 + AT_rich Low_complexity Low_complexity 1 22 0 380 319 53 0 chr3 152299292 152299420 -75225158 - MIR SINE MIR -63 145 10 338 220 11 11 chr3 152299746 152299837 -75224741 + L1ME LINE L1 5347 5437 -684 11129 30 0 6 chr3 152300104 152301751 -75222827 + L1P2 LINE L1 4127 5760 -395 1546 195 16 19 chr3 152301885 152302192 -75222386 - AluJb SINE Alu -6 306 1 1850 146 4 0 chr3 152302605 152302873 -75221705 + AluSp SINE Alu 1 269 -44 1914 124 0 25 chr3 152303539 152303822 -75220756 - AluSx SINE Alu -36 276 1 2071 132 20 0 chr3 152303830 152304134 -75220444 - AluSx SINE Alu -2 310 1 301 192 26 64 chr3 152304179 152304257 -75220321 - MIR SINE MIR -109 153 79 1813 220 65 77 chr3 152304398 152304524 -75220054 + MLT1H1 LTR MaLR 5 131 -424 2111 124 6 22 chr3 152304524 152304838 -75219740 + AluSx SINE Alu 3 311 -1 1813 220 65 77 chr3 152304838 152305269 -75219309 + MLT1H1 LTR MaLR 131 555 0 357 226 0 0 chr3 152305286 152305348 -75219230 - AluS SINE Alu -237 62 1 865 171 5 67 chr3 152305402 152305595 -75218983 - AluJo/FRAM SINE Alu 0 312 132 353 227 0 0 chr3 152305595 152305670 -75218908 - AluJ/FLAM SINE Alu -227 75 1 372 256 24 72 chr3 152305744 152305869 -75218709 - MIR SINE MIR -133 129 11 2754 33 0 0 chr3 152305910 152306215 -75218363 - AluY SINE Alu -5 306 2 739 122 0 0 chr3 152306315 152306413 -75218165 - AluSg/x SINE Alu -9 301 204 289 256 52 117 chr3 152307164 152307473 -75217105 - L2 LINE L2 -514 2800 2512 329 294 52 88 chr3 152307858 152308164 -75216414 - L2 LINE L2 -91 3181 2887 2320 103 0 10 chr3 152308456 152308768 -75215810 - AluSg SINE Alu -1 309 1 2132 121 10 0 chr3 152308870 152309160 -75215418 - AluSx SINE Alu -18 294 2 286 122 0 0 chr3 152309187 152309228 -75215350 + Alu SINE Alu 1 41 -259 817 177 8 0 chr3 152309228 152309358 -75215220 - FAM SINE Alu -54 131 1 2249 97 0 29 chr3 152309842 152310152 -75214426 - AluSg SINE Alu -9 301 1 45299 36 1 1 chr3 152310312 152316321 -75208257 - L1PA3 LINE L1 -142 6013 5 2031 136 10 3 chr3 152316422 152316716 -75207862 - AluJo SINE Alu -14 298 3 536 131 0 199 chr3 152316926 152317050 -75207528 + MER45A DNA AcHobo 17 98 -1483 2243 78 0 39 chr3 152317050 152317357 -75207221 + AluY SINE Alu 1 295 -16 536 131 0 199 chr3 152317357 152317408 -75207170 + MER45A DNA AcHobo 98 157 -21 264 179 143 12 chr3 152317693 152317777 -75206801 + MIR SINE MIR 96 190 -72 850 223 0 0 chr3 152317798 152317970 -75206608 - AluJb SINE Alu 0 309 138 238 221 44 96 chr3 152318099 152318235 -75206343 - L2 LINE L2 0 3313 3185 246 307 171 0 chr3 152318286 152318374 -75206204 - L2 LINE L2 -52 3220 3118 379 299 39 32 chr3 152318447 152318601 -75205977 - MIR SINE MIR -76 186 32 333 0 0 0 chr3 152318621 152318658 -75205920 + (TG)n Simple_repeat Simple_repeat 2 38 0 221 374 36 36 chr3 152318719 152318914 -75205664 - L2 LINE L2 -188 3084 2890 678 122 0 20 chr3 152318918 152319016 -75205562 + AluJ/FLAM SINE Alu 2 97 -215 470 289 96 39 chr3 152319433 152319641 -75204937 - Charlie8 DNA MER1_type -2183 234 15 1342 150 20 11 chr3 152319902 152320244 -75204334 - MSTA LTR MaLR 0 428 1 342 0 0 0 chr3 152320349 152320387 -75204191 + (TG)n Simple_repeat Simple_repeat 1 38 0 213 194 0 0 chr3 152320392 152320428 -75204150 + polypurine Low_complexity Low_complexity 2 37 0 364 259 109 14 chr3 152320725 152320872 -75203706 + MIR SINE MIR 74 234 -28 2341 95 0 0 chr3 152321005 152321300 -75203278 - AluSg SINE Alu -13 297 3 798 281 4 22 chr3 152323986 152324217 -75200361 - L2 LINE L2 -5 3308 3082 334 308 75 31 chr3 152324659 152324818 -75199760 - MIR SINE MIR -72 190 25 454 186 39 31 chr3 152324885 152325014 -75199564 + L1MC5 LINE L1 7393 7522 -439 1062 154 55 0 chr3 152325025 152325207 -75199371 + L1PB2 LINE L1 1 192 -6671 15554 185 21 20 chr3 152325218 152326273 -75198305 + L1PB2 LINE L1 645 1698 -5169 823 130 35 0 chr3 152326273 152326388 -75198190 + AluJb SINE Alu 2 120 -192 15554 185 21 20 chr3 152326388 152330988 -75193590 + L1PB2 LINE L1 1698 6390 -477 2126 145 0 0 chr3 152330988 152331291 -75193287 + AluSg SINE Alu 1 303 -7 15554 185 21 20 chr3 152331291 152331763 -75192815 + L1PB2 LINE L1 6390 6860 -7 232 212 76 0 chr3 152331779 152331845 -75192733 + L1MC5 LINE L1 7506 7576 -385 653 186 0 0 chr3 152331865 152331962 -75192616 + FRAM SINE Alu 1 94 -82 184 89 22 22 chr3 152331999 152332044 -75192534 + (TAAAAA)n Simple_repeat Simple_repeat 4 48 0 712 225 113 14 chr3 152332091 152332375 -75192203 + L1MC5 LINE L1 7590 7901 -60 213 306 32 0 chr3 152332734 152332796 -75191782 + MIR SINE MIR 58 121 -87 216 254 36 18 chr3 152332947 152333002 -75191576 + L2 LINE L2 3133 3188 -84 310 275 53 44 chr3 152333016 152333139 -75191439 + MIR SINE MIR 5 144 -64 22 0 0 0 chr3 152335944 152335966 -75188612 + AT_rich Low_complexity Low_complexity 1 22 0 319 269 159 21 chr3 152337222 152337367 -75187211 + L1MC5 LINE L1 7717 7881 -80 297 0 0 0 chr3 152338373 152338406 -75186172 + (CA)n Simple_repeat Simple_repeat 1 33 0 269 156 156 0 chr3 152339415 152339433 -75185145 + MER3 DNA MER1_type 28 55 -154 258 86 121 35 chr3 152339433 152339491 -75185087 - MER3 DNA MER1_type 0 209 147 288 327 39 0 chr3 152339669 152339773 -75184805 - MIR3 SINE MIR -7 201 94 298 356 0 42 chr3 152340163 152340281 -75184297 + MIR SINE MIR 28 140 -68 244 183 354 24 chr3 152340295 152340377 -75184201 - MIR3 SINE MIR -2 206 98 21 57 0 0 chr3 152341604 152341639 -75182939 + AT_rich Low_complexity Low_complexity 1 35 0 22762 153 33 12 chr3 152341912 152348569 -75176009 + L1M1 LINE L1 3 6806 -759 1728 86 4 12 chr3 152348569 152348807 -75175771 + L1MA2 LINE L1 6064 6304 0 2370 241 124 22 chr3 152348807 152348822 -75175756 + L1MD3 LINE L1 5314 5326 -2669 3144 119 32 34 chr3 152348822 152349351 -75175227 + L1MA5 LINE L1 5769 6296 -4 2370 241 124 22 chr3 152349351 152350182 -75174396 + L1MD3 LINE L1 5326 6246 -1749 528 228 10 0 chr3 152350185 152350286 -75174292 - MER8 DNA MER2_type 0 239 138 490 148 12 12 chr3 152350285 152350366 -75174212 + Charlie3 DNA MER1_type 2626 2706 -4 * 354 280 89 67 chr3 152350383 152350665 -75173913 + L1ME LINE L1 2686 2973 -3173 288 262 59 84 chr3 152351501 152351703 -75172875 + L1ME LINE L1 3784 3980 -2166 346 236 205 39 chr3 152352040 152352167 -75172411 + L1ME2 LINE L1 5998 6145 -19 * 5211 187 31 22 chr3 152352163 152354004 -75170574 - L1MC2 LINE L1 -422 5922 4069 352 272 89 100 chr3 152354145 152354697 -75169881 + L1ME LINE L1 4456 5001 -1145 540 289 63 41 chr3 152354829 152355099 -75169479 - LTR16A LTR ERVL -158 292 17 263 289 0 12 chr3 152355380 152355463 -75169115 + L1ME LINE L1 5353 5434 -736 303 287 30 10 chr3 152355464 152355565 -75169013 - MIR SINE MIR -113 149 47 335 202 96 0 chr3 152355608 152355712 -75168866 + HAL1 LINE L1 55 168 -2339 * 5879 131 41 20 chr3 152355705 152356880 -75167698 + L1MA6 LINE L1 5106 6300 0 610 241 86 32 chr3 152356885 152357072 -75167506 + HAL1 LINE L1 156 352 -2155 402 284 60 0 chr3 152357102 152357218 -75167360 + HAL1 LINE L1 532 654 -1853 271 250 130 65 chr3 152357987 152358095 -75166483 - MIR SINE MIR -117 145 31 339 210 0 0 chr3 152358178 152358240 -75166338 + MER5B DNA MER1_type 1 62 -116 221 208 75 0 chr3 152358218 152358271 -75166307 - MER5B DNA MER1_type -120 58 2 * 3550 198 93 25 chr3 152358573 152359380 -75165198 - MER21B LTR ERV1 -1 862 1 1788 243 133 21 chr3 152361612 152362234 -75162344 + HsTC2c DNA Tc2 38 729 0 5411 161 29 4 chr3 152362254 152364106 -75160472 + L1PB2 LINE L1 4125 6018 -133 193 181 83 83 chr3 152364224 152364296 -75160282 - MIR SINE MIR -112 150 79 1517 262 37 60 chr3 152364425 152364551 -75160027 + MLT1H1 LTR MaLR 5 132 -423 2107 122 6 22 chr3 152364551 152364862 -75159716 + AluSx SINE Alu 3 308 -4 1517 262 37 60 chr3 152364862 152365299 -75159279 + MLT1H1 LTR MaLR 132 555 0 357 226 0 0 chr3 152365316 152365378 -75159200 - AluS SINE Alu -239 62 1 865 171 5 67 chr3 152365432 152365625 -75158953 - AluJo/FRAM SINE Alu 0 312 132 353 227 0 0 chr3 152365625 152365700 -75158878 - AluJ/FLAM SINE Alu -227 75 1 372 256 24 72 chr3 152365774 152365899 -75158679 - MIR SINE MIR -133 129 11 2514 58 0 10 chr3 152365940 152366249 -75158329 - AluY SINE Alu -5 306 1 212 213 16 33 chr3 152366307 152366368 -75158210 - MIR3 SINE MIR -48 160 101 712 212 0 0 chr3 152366370 152366488 -75158090 + AluJb SINE Alu 2 119 -193 211 71 0 0 chr3 152366488 152366516 -75158062 + (CAA)n Simple_repeat Simple_repeat 1 28 0 366 186 0 0 chr3 152366516 152366602 -75157976 + A-rich Low_complexity Low_complexity 1 86 0 475 222 37 22 chr3 152368080 152368215 -75156363 - MER103 DNA DNA -19 147 11 2224 95 0 3 chr3 152368446 152368756 -75155822 - AluSx SINE Alu 0 309 1 474 192 213 40 chr3 152368795 152369007 -75155571 - MIR SINE MIR -7 255 8 326 268 71 0 chr3 152369189 152369301 -75155277 - MLT1L LTR MaLR -69 546 427 555 246 56 46 chr3 152369367 152369562 -75155016 - MLT1L LTR MaLR -310 305 109 459 0 0 0 chr3 152369619 152369670 -75154908 + (TG)n Simple_repeat Simple_repeat 2 52 0 517 272 173 16 chr3 152369801 152370236 -75154342 + MLT1H LTR MaLR 23 549 0 278 269 60 45 chr3 152370319 152370453 -75154125 - L1ME4a LINE L1 -31 6090 5955 478 205 0 0 chr3 152370454 152370532 -75154046 + Tigger5 DNA MER2_type 2 79 -2244 2171 121 3 3 chr3 152370565 152370863 -75153715 - AluSx SINE Alu -14 298 1 2217 121 3 0 chr3 152370863 152371160 -75153418 - AluSx SINE Alu -14 298 1 3261 155 19 6 chr3 152371160 152371682 -75152896 + ERVL LTR ERVL 4412 4940 -824 1366 103 0 49 chr3 152371801 152372005 -75152573 + AluSg/x SINE Alu 104 297 -15 3464 166 32 5 chr3 152372017 152372613 -75151965 - L1MB5 LINE L1 -64 6110 5499 2133 135 3 0 chr3 152372621 152372917 -75151661 - AluSp SINE Alu -16 297 1 1637 192 16 19 chr3 152373330 152373637 -75150941 + AluJb SINE Alu 1 306 -6 340 286 34 25 chr3 152373655 152373774 -75150804 + MER5A DNA MER1_type 69 188 -1 572 275 215 29 chr3 152374454 152374803 -75149775 - MLT1H1 LTR MaLR -2 553 175 400 316 54 18 chr3 152374804 152374972 -75149606 + MIR SINE MIR 51 224 -38 2207 99 7 7 chr3 152375045 152375347 -75149231 + AluSx SINE Alu 1 302 -10 360 0 0 0 chr3 152375422 152375462 -75149116 + (TG)n Simple_repeat Simple_repeat 2 41 0 236 214 73 109 chr3 152375521 152375713 -75148865 + L1ME LINE L1 5634 5818 -303 349 255 20 10 chr3 152376029 152376127 -75148451 + MLT1J2 LTR MaLR 344 442 -8 2487 211 40 60 chr3 152376128 152376369 -75148209 + MLT1G LTR MaLR 1 245 -345 2507 78 0 3 chr3 152376369 152376678 -75147900 + AluSq SINE Alu 1 308 -5 2487 211 40 60 chr3 152376678 152377038 -75147540 + MLT1G LTR MaLR 245 590 0 316 279 10 29 chr3 152377055 152377159 -75147419 + LTR67 LTR ERVL 456 557 0 2326 95 7 0 chr3 152377159 152377465 -75147113 + AluSx SINE Alu 1 308 -4 590 269 120 14 chr3 152377473 152377756 -75146822 + L1ME4a LINE L1 5782 6094 -27 29 60 0 0 chr3 152377768 152377818 -75146760 + AT_rich Low_complexity Low_complexity 1 50 0 384 243 7 14 chr3 152377961 152378101 -75146477 + (TA)n Simple_repeat Simple_repeat 1 139 0 461 266 50 7 chr3 152378101 152378240 -75146338 + MLT1G1 LTR MaLR 32 176 -379 2315 111 0 13 chr3 152378279 152378595 -75145983 - AluSx SINE Alu 0 312 1 511 227 94 12 chr3 152378646 152378814 -75145764 + MLT1G1 LTR MaLR 201 386 -156 1151 104 0 12 chr3 152379116 152379279 -75145299 + AluSc SINE Alu 145 305 -4 590 269 120 14 chr3 152379287 152379570 -75145008 + L1ME4a LINE L1 5782 6094 -27 29 60 0 0 chr3 152379582 152379632 -75144946 + AT_rich Low_complexity Low_complexity 1 50 0 393 241 7 14 chr3 152379775 152379916 -75144662 + (TA)n Simple_repeat Simple_repeat 2 141 0 416 200 69 46 chr3 152379939 152380069 -75144509 + MLT1H1 LTR MaLR 58 233 -316 2138 111 6 22 chr3 152380093 152380408 -75144170 - AluSg SINE Alu 0 310 1 2281 98 10 0 chr3 152380733 152381039 -75143539 + AluY SINE Alu 1 309 -2 771 276 184 16 chr3 152381393 152381897 -75142681 + L2 LINE L2 2718 3311 -2 264 297 55 11 chr3 152382148 152382239 -75142339 + MIR SINE MIR 77 171 -91 700 165 101 57 chr3 152382342 152382500 -75142078 - MIR SINE MIR -77 185 21 292 333 67 0 chr3 152382464 152382569 -75142009 + MIR SINE MIR 34 145 -117 * 2134 146 10 0 chr3 152382602 152382911 -75141667 + AluSx SINE Alu 1 312 0 2019 168 139 19 chr3 152382993 152383410 -75141168 + MLT1C LTR MaLR 1 467 0 1866 154 4 0 chr3 152384203 152384482 -75140096 + AluJo SINE Alu 1 280 -32 306 163 0 0 chr3 152384507 152384556 -75140022 + L1PB4 LINE L1 6090 6138 -18 23 33 0 0 chr3 152384558 152384588 -75139990 + AT_rich Low_complexity Low_complexity 1 30 0 2137 100 13 27 chr3 152384702 152385002 -75139576 + AluSx SINE Alu 1 296 -16 1664 227 101 36 chr3 152385007 152385277 -75139301 - MLT1F LTR MaLR -13 529 278 683 167 9 9 chr3 152385277 152385391 -75139187 + MER81 DNA DNA 1 114 0 1664 227 101 36 chr3 152385391 152385617 -75138961 - MLT1F LTR MaLR -264 278 1 617 280 121 17 chr3 152385617 152385903 -75138675 - MLT1G1 LTR MaLR -26 569 159 2156 111 7 3 chr3 152385932 152386229 -75138349 + AluSq SINE Alu 1 298 -15 287 289 36 0 chr3 152386300 152386383 -75138195 + MER58 DNA MER1_type 28 113 -2307 1365 198 95 41 chr3 152386610 152386978 -75137600 - MLT1B LTR MaLR -2 388 1 2209 105 3 10 chr3 152387543 152387847 -75136731 - AluSx SINE Alu -10 302 1 1871 162 0 10 chr3 152388415 152388712 -75135866 - AluJb SINE Alu -18 294 1 2483 69 0 7 chr3 152388717 152389022 -75135556 - AluSp SINE Alu -10 303 1 200 211 0 0 chr3 152389213 152389251 -75135327 + (CATATA)n Simple_repeat Simple_repeat 3 40 0 275 289 141 16 chr3 152390132 152390253 -75134325 - MIR SINE MIR -103 159 24 300 292 71 18 chr3 152390328 152390496 -75134082 + L1ME1 LINE L1 97 280 -5925 999 275 80 24 chr3 152390644 152391095 -75133483 + L1ME1 LINE L1 1469 1944 -4452 1231 214 18 0 chr3 152391095 152391315 -75133263 - MER58A DNA MER1_type 0 224 1 2445 96 0 0 chr3 152391367 152391679 -75132899 - AluSq SINE Alu -1 312 1 1556 240 134 16 chr3 152391758 152392584 -75131994 + L1ME1 LINE L1 2117 2981 -3234 2145 105 0 7 chr3 152392605 152392920 -75131658 - AluSx SINE Alu 0 313 1 2050 250 110 14 chr3 152392937 152393122 -75131456 + L1ME1 LINE L1 3397 3563 -2652 2144 118 10 3 chr3 152393122 152393428 -75131150 + AluSx SINE Alu 1 308 -4 1572 148 107 0 chr3 152393438 152393701 -75130877 + AluJb SINE Alu 11 301 -11 2050 250 110 14 chr3 152393701 152394343 -75130235 + L1ME1 LINE L1 3571 4315 -1900 1331 150 87 53 chr3 152394397 152394663 -75129915 + AluJb SINE Alu 1 275 -37 395 243 81 85 chr3 152394840 152395075 -75129503 - MIR SINE MIR -6 256 23 268 215 147 55 chr3 152395126 152395289 -75129289 - L1MC5 LINE L1 -60 7901 7724 21 0 0 0 chr3 152395315 152395336 -75129242 + AT_rich Low_complexity Low_complexity 1 21 0 2312 103 0 25 chr3 152395458 152395778 -75128800 - AluSx SINE Alu 0 312 1 580 96 43 9 chr3 152396337 152396452 -75128126 + CT-rich Low_complexity Low_complexity 2 120 0 2332 93 6 6 chr3 152396467 152396780 -75127798 - AluSp SINE Alu 0 313 1 5387 40 0 0 chr3 152396816 152397417 -75127161 + L1PA5 LINE L1 5554 6154 0 226 156 89 0 chr3 152397547 152397592 -75126986 + L1M1 LINE L1 5711 5759 -543 294 176 54 40 chr3 152397616 152397677 -75126901 + HSMAR2 DNA Mariner 1 65 -1237 957 205 0 0 chr3 152397677 152397843 -75126735 - FRAM SINE Alu 0 166 1 294 176 54 40 chr3 152397843 152397855 -75126723 + HSMAR2 DNA Mariner 65 75 -1227 510 167 0 0 chr3 152397868 152397940 -75126638 - AluS SINE Alu -239 73 2 7856 113 25 13 chr3 152397941 152399097 -75125481 + HSMAR2 DNA Mariner 54 1223 -79 3043 57 5 3 chr3 152399104 152399490 -75125088 - LTR7 LTR ERV1 -63 387 1 739 102 6 73 chr3 152399490 152399667 -75124911 - HERVH LTR ERV1 0 7713 7549 6950 64 0 6 chr3 152399895 152400734 -75123844 + L1PA6 LINE L1 5316 6149 -5 3538 206 24 58 chr3 152400739 152401569 -75123009 + L1ME1 LINE L1 4957 5813 -422 207 0 0 0 chr3 152401569 152401592 -75122986 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 3344 27 3 3 chr3 152401592 152401965 -75122613 - L1PA2 LINE L1 -12 6143 5771 3538 206 24 58 chr3 152401965 152401994 -75122584 + L1ME1 LINE L1 5812 5840 -395 1898 172 0 6 chr3 152401994 152402308 -75122270 - AluSx SINE Alu 0 312 1 3538 206 24 58 chr3 152402308 152402764 -75121814 + L1ME1 LINE L1 5840 6230 -5 261 338 105 0 chr3 152402934 152403067 -75121511 - MIR SINE MIR -10 252 106 276 160 160 0 chr3 152403739 152403814 -75120764 + LTR33 LTR ERVL 433 519 -2 2515 61 3 6 chr3 152404388 152404700 -75119878 + AluY SINE Alu 1 311 0 298 340 19 0 chr3 152405074 152405180 -75119398 - MIR SINE MIR -65 143 36 423 0 0 0 chr3 152406075 152406122 -75118456 + (TG)n Simple_repeat Simple_repeat 2 48 0 2103 203 75 39 chr3 152406131 152406668 -75117910 + MER74A LTR ERVL 1 556 -2 255 310 47 16 chr3 152408158 152408287 -75116291 + L1ME LINE L1 5643 5775 -346 592 226 136 50 chr3 152408291 152408512 -75116066 + MIR SINE MIR 2 241 -21 205 250 80 70 chr3 152409488 152409588 -75114990 + MER5A DNA MER1_type 86 186 -3 279 302 181 17 chr3 152411422 152411538 -75113040 + MIR3 SINE MIR 15 149 -59 202 211 26 0 chr3 152413659 152413697 -75110881 + L2 LINE L2 3204 3242 -30 296 267 105 0 chr3 152413698 152413784 -75110794 - L2 LINE L2 -16 3256 3162 210 259 37 133 chr3 152414159 152414294 -75110284 - MIR SINE MIR -66 142 21 362 256 165 38 chr3 152415002 152415135 -75109443 + MER5B DNA MER1_type 29 178 0 23 0 0 0 chr3 152415411 152415434 -75109144 + AT_rich Low_complexity Low_complexity 1 23 0 1851 157 9 28 chr3 152415518 152415836 -75108742 + AluJb SINE Alu 1 312 0 1955 168 0 0 chr3 152416448 152416757 -75107821 - AluSx SINE Alu -3 309 1 915 259 39 36 chr3 152416820 152417152 -75107426 + L2 LINE L2 2977 3309 -4 1907 179 55 13 chr3 152417298 152417677 -75106901 - MER119 DNA MER1_type -105 478 84 374 261 115 34 chr3 152417802 152418036 -75106542 - L1MC5 LINE L1 -1 7960 7708 1941 131 15 0 chr3 152418070 152418344 -75106234 + AluSx SINE Alu 11 288 -24 188 262 0 0 chr3 152418376 152418418 -75106160 + MIR SINE MIR 187 228 -34 1722 178 10 19 chr3 152420459 152420768 -75103810 + AluJo SINE Alu 1 306 -6 186 300 38 50 chr3 152420975 152421055 -75103523 - L2 LINE L2 0 3272 3194 4940 64 0 3 chr3 152421621 152422203 -75102375 + L1PA5 LINE L1 5572 6151 -3 3361 177 5 7 chr3 152422266 152422848 -75101730 - L1MB5 LINE L1 -9 6165 5585 583 327 96 50 chr3 152423398 152423890 -75100688 + L1ME3 LINE L1 3920 4486 -1660 1845 121 32 25 chr3 152423890 152424210 -75100368 + AluSx SINE Alu 1 322 0 583 327 96 50 chr3 152424210 152424555 -75100023 + L1ME3 LINE L1 4486 4814 -1332 447 73 15 0 chr3 152424718 152424786 -75099792 - L1MA7 LINE L1 -4 6287 6219 412 319 53 72 chr3 152425128 152425432 -75099146 + L1ME3 LINE L1 5328 5625 -496 1266 193 38 8 chr3 152425480 152425718 -75098860 - MLT2F LTR ERVL -55 608 364 201 154 0 0 chr3 152425830 152425869 -75098709 + (CATA)n Simple_repeat Simple_repeat 2 40 0 25 0 0 0 chr3 152425871 152425896 -75098682 + AT_rich Low_complexity Low_complexity 1 25 0 954 261 105 21 chr3 152426183 152426508 -75098070 - L2 LINE L2 -11 3302 2951 511 163 0 0 chr3 152429807 152429887 -75094691 + L1ME3 LINE L1 5802 5881 -281 211 200 0 0 chr3 152431226 152431271 -75093307 + L2 LINE L2 3264 3308 -5 2426 111 32 16 chr3 152431577 152431946 -75092632 + THE1C LTR MaLR 1 375 0 566 151 36 143 chr3 152431946 152432187 -75092391 - Charlie4 DNA MER1_type -8 1953 1738 570 270 40 0 chr3 152432552 152432704 -75091874 - Charlie4 DNA MER1_type -1705 256 99 28 0 0 0 chr3 152432724 152432752 -75091826 + AT_rich Low_complexity Low_complexity 1 28 0 470 224 10 10 chr3 152432756 152432854 -75091724 - Charlie4 DNA MER1_type -1847 114 17 21 0 0 0 chr3 152432946 152432967 -75091611 + AT_rich Low_complexity Low_complexity 1 21 0 1241 171 14 9 chr3 152433917 152434133 -75090445 - AluJo SINE Alu -95 217 1 2183 116 7 0 chr3 152434142 152434435 -75090143 - AluSq SINE Alu -16 297 3 725 257 68 43 chr3 152434833 152434954 -75089624 - L1MC5 LINE L1 -44 7917 7801 2002 128 26 16 chr3 152434954 152435258 -75089320 - AluSx SINE Alu -5 307 1 725 257 68 43 chr3 152435258 152435533 -75089045 - L1MC5 LINE L1 -160 7801 7511 2357 78 3 26 chr3 152435882 152436188 -75088390 - AluSg SINE Alu -11 299 1 543 213 107 30 chr3 152436251 152436420 -75088158 - MIR SINE MIR 0 262 81 217 250 53 66 chr3 152436546 152436622 -75087956 + MIR3 SINE MIR 117 191 -17 1412 78 0 0 chr3 152436907 152437087 -75087491 + L1PA5 LINE L1 5975 6154 0 795 304 4 29 chr3 152437286 152437566 -75087012 + AluSx SINE Alu 2 274 -38 22 56 0 0 chr3 152437779 152437815 -75086763 + GC_rich Low_complexity Low_complexity 1 36 0 21 71 0 0 chr3 152437875 152437917 -75086661 + GC_rich Low_complexity Low_complexity 1 42 0 2137 100 13 27 chr3 152438087 152438387 -75086191 + AluSx SINE Alu 1 296 -16 1664 227 101 36 chr3 152438392 152438662 -75085916 - MLT1F LTR MaLR -13 529 278 683 167 9 9 chr3 152438662 152438776 -75085802 + MER81 DNA DNA 1 114 0 1664 227 101 36 chr3 152438776 152439002 -75085576 - MLT1F LTR MaLR -264 278 1 624 263 74 48 chr3 152439002 152439266 -75085312 - MLT1G1 LTR MaLR -26 569 201 1930 108 22 4 chr3 152439322 152439600 -75084978 + AluSc SINE Alu 6 288 -21 204 40 0 0 chr3 152439655 152439680 -75084898 + (CAT)n Simple_repeat Simple_repeat 1 25 0 643 267 104 14 chr3 152439695 152439916 -75084662 - MIR SINE MIR -10 252 12 333 208 0 13 chr3 152440970 152441047 -75083531 - MER116 DNA Mariner 0 80 5 201 94 0 0 chr3 152441112 152441144 -75083434 + (TG)n Simple_repeat Simple_repeat 2 33 0 326 227 151 84 chr3 152441558 152441677 -75082901 + L2 LINE L2 3146 3272 0 1057 173 0 59 chr3 152442371 152442591 -75081987 + AluJo SINE Alu 1 207 -105 2323 94 0 3 chr3 152443194 152443493 -75081085 + AluSg SINE Alu 1 298 -12 940 184 173 14 chr3 152443579 152443773 -75080805 + MER33 DNA MER1_type 3 255 -2330 837 145 15 0 chr3 152443773 152443904 -75080674 - FLAM_C SINE Alu 0 133 1 940 184 173 14 chr3 152443904 152443987 -75080591 + MER33 DNA MER1_type 255 324 0 2186 134 0 6 chr3 152444107 152444420 -75080158 - AluSx SINE Alu -1 311 1 210 105 0 0 chr3 152447518 152447556 -75077022 + (A)n Simple_repeat Simple_repeat 1 38 0 2125 101 17 7 chr3 152448983 152449281 -75075297 - AluSx SINE Alu -11 301 1 1839 168 0 10 chr3 152449420 152449717 -75074861 - AluJo SINE Alu -16 296 3 1179 194 92 22 chr3 152449759 152450074 -75074504 - MER2 DNA MER2_type -4 340 4 386 195 57 96 chr3 152450214 152450397 -75074181 + L1MC4a LINE L1 5656 5829 -340 252 118 103 0 chr3 152450399 152450467 -75074111 + GA-rich Low_complexity Low_complexity 3 77 0 2363 92 0 10 chr3 152450593 152450899 -75073679 - AluSp SINE Alu -10 303 1 444 190 0 0 chr3 152451366 152451445 -75073133 + FLAM SINE Alu 48 126 -17 35 0 0 0 chr3 152451461 152451496 -75073082 + AT_rich Low_complexity Low_complexity 1 35 0 966 155 18 18 chr3 152452734 152452902 -75071676 + FAM SINE Alu 1 42 -7 510 262 142 16 chr3 152453168 152453351 -75071227 - MIR SINE MIR -56 206 1 2152 126 7 0 chr3 152453377 152453671 -75070907 - AluSx SINE Alu -16 296 1 2194 110 7 7 chr3 152453865 152454166 -75070412 + AluSp SINE Alu 9 309 -4 966 168 17 6 chr3 152454464 152454643 -75069935 - MER58A DNA MER1_type 0 224 44 899 220 101 42 chr3 152454671 152455007 -75069571 + MER20B DNA MER1_type 1 356 -427 465 211 101 45 chr3 152455057 152455304 -75069274 + MER20B DNA MER1_type 488 748 -35 288 286 27 36 chr3 152456434 152456546 -75068032 + L2 LINE L2 3192 3302 -11 204 158 0 0 chr3 152457153 152457191 -75067387 + GA-rich Low_complexity Low_complexity 1 38 0 513 241 156 75 chr3 152457658 152457848 -75066730 - L1MC4a LINE L1 -1980 5828 5655 465 252 0 50 chr3 152457848 152457987 -75066591 + FLAM_A SINE Alu 1 132 -1 513 241 156 75 chr3 152457987 152458205 -75066373 - L1MC4a LINE L1 -2153 5655 5371 2233 91 0 3 chr3 152458205 152458491 -75066087 - AluSg SINE Alu -25 285 1 513 241 156 75 chr3 152458491 152458574 -75066004 - L1MC4a LINE L1 -2437 5371 5296 1717 196 3 0 chr3 152458707 152458992 -75065586 - AluJo SINE Alu -15 297 12 715 207 87 7 chr3 152459007 152459157 -75065421 - AluSg/x SINE Alu -16 294 133 1883 166 20 3 chr3 152459328 152459630 -75064948 + AluSq SINE Alu 5 311 -2 274 196 0 0 chr3 152459630 152459681 -75064897 + MSTA LTR MaLR 378 428 0 1420 259 84 25 chr3 152460055 152460279 -75064299 + L2 LINE L2 1901 2110 -1204 1587 217 4 4 chr3 152460279 152460585 -75063993 + AluJb SINE Alu 1 306 0 1420 259 84 25 chr3 152460585 152460879 -75063699 + L2 LINE L2 2110 2452 -862 370 293 30 58 chr3 152460932 152460997 -75063581 + HAL1b LINE L1 287 352 -996 2301 116 0 22 chr3 152460997 152461316 -75063262 + AluSx SINE Alu 1 312 0 370 293 30 58 chr3 152461316 152461615 -75062963 + HAL1b LINE L1 352 641 -707 790 188 39 7 chr3 152461866 152462020 -75062558 - AluJb SINE Alu -153 159 1 1770 130 31 38 chr3 152462033 152462326 -75062252 - AluJo SINE Alu -21 291 1 1160 255 88 28 chr3 152462391 152462889 -75061689 + L1ME3A LINE L1 5475 6002 -168 22 35 0 0 chr3 152463009 152463038 -75061540 + AT_rich Low_complexity Low_complexity 1 29 0 299 305 154 4 chr3 152463445 152463604 -75060974 - MIR3 SINE MIR -11 197 34 21 0 0 0 chr3 152463870 152463891 -75060687 + AT_rich Low_complexity Low_complexity 1 21 0 275 353 73 20 chr3 152464295 152464445 -75060133 - MIR SINE MIR -71 191 34 234 171 0 0 chr3 152465039 152465080 -75059498 - Alu SINE Alu -54 79 39 374 342 100 42 chr3 152465559 152465809 -75058769 - L2 LINE L2 -7 3306 3025 4497 52 23 9 chr3 152465809 152466384 -75058194 + L1PA6 LINE L1 5572 6154 0 374 342 100 42 chr3 152466384 152466513 -75058065 - L2 LINE L2 -288 3025 2905 2009 134 7 0 chr3 152467191 152467475 -75057103 - AluJb SINE Alu -26 286 1 21 36 0 0 chr3 152467562 152467590 -75056988 + AT_rich Low_complexity Low_complexity 1 28 0 1537 203 45 3 chr3 152468132 152468422 -75056156 - AluJb SINE Alu -10 302 1 227 250 77 71 chr3 152468593 152468761 -75055817 - L1ME3A LINE L1 -29 6141 5973 1756 155 24 24 chr3 152468767 152469058 -75055520 - AluJo SINE Alu -21 291 1 1452 231 51 50 chr3 152469141 152469786 -75054792 - L1MC5 LINE L1 -438 7523 6878 298 0 0 0 chr3 152469807 152469846 -75054732 - HY3 scRNA scRNA -1 100 62 203 161 0 0 chr3 152470308 152470339 -75054239 + (CATATA)n Simple_repeat Simple_repeat 3 33 0 327 161 0 0 chr3 152471560 152471616 -75052962 + MER58 DNA MER1_type 2357 2412 -8 736 217 90 38 chr3 152471674 152471886 -75052692 - MIR SINE MIR -38 224 2 2313 91 3 0 chr3 152472636 152472932 -75051646 + AluSg SINE Alu 1 297 -13 1985 160 0 0 chr3 152473138 152473438 -75051140 + AluSx SINE Alu 1 300 -12 291 241 24 0 chr3 152473575 152473658 -75050920 + L1MEd LINE L1 2 86 -6033 608 303 60 50 chr3 152473749 152474268 -75050310 + L1MEd LINE L1 233 756 -5363 546 157 174 26 chr3 152474344 152474459 -75050119 + AluSg SINE Alu 1 132 -178 682 205 140 54 chr3 152474468 152474804 -75049774 + L1MEd LINE L1 889 1253 -4866 250 323 83 21 chr3 152474813 152475005 -75049573 + HAL1 LINE L1 1400 1603 -904 2196 108 3 3 chr3 152475285 152475581 -75048997 + AluSp SINE Alu 1 296 -17 209 335 138 6 chr3 152477159 152477326 -75047252 + MIR SINE MIR 59 247 -15 1941 96 11 14 chr3 152477728 152478008 -75046570 - AluSq SINE Alu -34 279 1 294 263 217 88 chr3 152478230 152478447 -75046131 + MIR SINE MIR 12 256 -6 1240 169 28 19 chr3 152478456 152478669 -75045909 + AluJo SINE Alu 87 301 -11 2279 96 0 13 chr3 152480148 152480450 -75044128 - AluSx SINE Alu -14 298 1 21 0 0 0 chr3 152481423 152481444 -75043134 + AT_rich Low_complexity Low_complexity 1 21 0 1882 133 18 0 chr3 152481446 152481754 -75042824 + AluSx SINE Alu 1 312 0 396 304 24 0 chr3 152482626 152482751 -75041827 + L2 LINE L2 3180 3307 -6 25 0 0 0 chr3 152483544 152483569 -75041009 + AT_rich Low_complexity Low_complexity 1 25 0 201 215 31 0 chr3 152483646 152483711 -75040867 + (TA)n Simple_repeat Simple_repeat 2 68 0 1000 167 13 0 chr3 152483713 152483863 -75040715 + AluJb SINE Alu 134 285 -27 731 142 0 0 chr3 152483900 152484006 -75040572 - AluSg/x SINE Alu -13 299 194 2168 118 0 10 chr3 152484699 152485013 -75039565 + AluSx SINE Alu 1 311 -1 1633 188 7 17 chr3 152485052 152485350 -75039228 + AluSx SINE Alu 15 309 -3 1094 308 38 13 chr3 152485734 152486248 -75038330 + L2 LINE L2 2560 3086 -227 865 256 127 42 chr3 152486410 152486989 -75037589 + L2 LINE L2 2690 3312 -1 196 252 296 26 chr3 152487029 152487144 -75037434 + MER5A DNA MER1_type 41 186 -3 373 345 74 0 chr3 152488794 152488942 -75035636 - MIR SINE MIR -83 179 21 29 47 0 0 chr3 152489245 152489288 -75035290 + AT_rich Low_complexity Low_complexity 1 43 0 1924 148 198 7 chr3 152489475 152489879 -75034699 + MER31A LTR ERV1 1 481 -4 256 264 107 38 chr3 152490058 152490217 -75034361 - MIR SINE MIR 0 262 93 745 222 72 0 chr3 152490540 152490707 -75033871 + MER5A DNA MER1_type 1 179 -10 1022 221 70 55 chr3 152490742 152490843 -75033735 + MER2 DNA MER2_type 11 109 -236 2129 112 10 3 chr3 152490843 152491139 -75033439 - AluSg SINE Alu -12 298 1 1022 221 70 55 chr3 152491139 152491367 -75033211 + MER2 DNA MER2_type 109 345 0 578 140 28 47 chr3 152491445 152491552 -75033026 + U6 snRNA snRNA 1 105 -2 730 158 0 17 chr3 152491552 152491672 -75032906 + FLAM_C SINE Alu 2 119 -14 2088 163 0 3 chr3 152491704 152492017 -75032561 + AluJb SINE Alu 1 312 0 2232 85 37 3 chr3 152492181 152492476 -75032102 + AluSp SINE Alu 1 305 -8 21 0 0 0 chr3 152492545 152492566 -75032012 + AT_rich Low_complexity Low_complexity 1 21 0 1676 260 51 48 chr3 152492800 152492913 -75031665 + L1ME3A LINE L1 2978 3089 -3057 1913 151 6 28 chr3 152492913 152493231 -75031347 + AluSx SINE Alu 1 311 -1 1676 260 51 48 chr3 152493231 152493974 -75030604 + L1ME3A LINE L1 3089 3837 -2309 763 191 6 13 chr3 152493975 152494132 -75030446 + AluJo SINE Alu 121 276 -36 339 130 0 0 chr3 152494139 152494193 -75030385 + (GGGAA)n Simple_repeat Simple_repeat 5 58 0 200 105 18 53 chr3 152494200 152494257 -75030321 + (GAAAA)n Simple_repeat Simple_repeat 2 56 0 472 240 39 53 chr3 152494261 152494469 -75030109 + L1ME3A LINE L1 3861 4065 -2081 280 273 136 0 chr3 152494496 152494606 -75029972 + L1ME LINE L1 5574 5698 -472 * 630 258 118 9 chr3 152494603 152494832 -75029746 + L1ME3A LINE L1 4119 4372 -1774 1359 226 129 21 chr3 152494834 152495259 -75029319 + L1ME3A LINE L1 5695 6165 -5 958 161 37 82 chr3 152496276 152496376 -75028202 + MER58B DNA MER1_type 10 113 -2307 2298 92 7 0 chr3 152496376 152496682 -75027896 + AluSx SINE Alu 1 308 -4 958 161 37 82 chr3 152496682 152496824 -75027754 + MER58B DNA MER1_type 113 241 -2179 2266 170 41 10 chr3 152496838 152497256 -75027322 - MER65C LTR ERV1 -30 431 1 352 172 204 21 chr3 152497256 152497341 -75027237 + MER58B DNA MER1_type 240 341 0 2144 90 0 22 chr3 152498772 152499083 -75025495 + AluSg SINE Alu 1 304 -6 1152 160 0 0 chr3 152499100 152499275 -75025303 - AluJ SINE Alu -7 305 131 7288 53 4 0 chr3 152499284 152500262 -75024316 - L1PA7 LINE L1 -2 6152 5174 2232 108 0 0 chr3 152500273 152500597 -75023981 - AluSg SINE Alu 0 324 1 857 172 0 0 chr3 152500612 152500746 -75023832 - AluJ SINE Alu -176 136 3 2541 201 100 70 chr3 152500759 152501582 -75022996 - L1ME2 LINE L1 -1 6163 5317 1737 160 7 10 chr3 152501623 152501916 -75022662 - AluJo SINE Alu 0 312 21 210 71 0 0 chr3 152501951 152501979 -75022599 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 8008 113 1 0 chr3 152502652 152503753 -75020825 + L1P LINE L1 5 1106 -5040 699 228 93 23 chr3 152504306 152504521 -75020057 - MIR SINE MIR -13 249 20 1337 252 29 62 chr3 152504772 152505157 -75019421 - MLT1J1 LTR MaLR -11 435 64 1154 279 86 35 chr3 152505226 152505326 -75019252 - LTR16C LTR ERVL 0 491 398 2329 105 3 3 chr3 152505326 152505632 -75018946 + AluSq SINE Alu 1 306 -7 1154 279 86 35 chr3 152505632 152505994 -75018584 - LTR16C LTR ERVL -93 398 5 1813 211 64 15 chr3 152506498 152506990 -75017588 - REP3 LTR ERV 0 562 1 22755 56 4 0 chr3 152507458 152510576 -75014002 + L1P2 LINE L1 2527 5656 -498 575 183 31 115 chr3 152510916 152510986 -75013592 - MER5B DNA MER1_type -3 175 101 2323 92 0 0 chr3 152510986 152511280 -75013298 + AluSx SINE Alu 2 295 -17 575 183 31 115 chr3 152511280 152511400 -75013178 - MER5B DNA MER1_type -77 101 1 411 262 79 0 chr3 152512518 152512644 -75011934 - MIR SINE MIR -124 138 3 2140 93 34 7 chr3 152512808 152513099 -75011479 - AluSg SINE Alu -11 299 1 771 204 26 7 chr3 152513173 152513325 -75011253 - LTR32 LTR ERVL 0 471 317 1573 147 3 28 chr3 152513334 152513653 -75010925 - AluY SINE Alu 0 311 1 1002 198 25 112 chr3 152515423 152515746 -75008832 + MER51C LTR ERV1 346 640 0 423 255 0 19 chr3 152515750 152515856 -75008722 - MLT1C LTR MaLR 0 467 364 7961 69 8 3 chr3 152516302 152517352 -75007226 + L1P LINE L1 1338 2392 -3754 200 316 0 0 chr3 152518215 152518272 -75006306 + MIR SINE MIR 92 148 -60 2154 122 6 3 chr3 152518274 152518586 -75005992 - AluSq SINE Alu 0 313 1 3200 73 0 0 chr3 152518666 152519078 -75005500 - L1PA6 LINE L1 -2 6152 5741 23 0 0 0 chr3 152519086 152519109 -75005469 + AT_rich Low_complexity Low_complexity 1 23 0 1887 148 7 14 chr3 152519114 152519411 -75005167 + AluSq SINE Alu 1 295 -18 744 94 9 0 chr3 152519580 152519686 -75004892 - AluSq/x SINE Alu -205 108 2 200 119 0 48 chr3 152520898 152520940 -75003638 + (TCCCC)n Simple_repeat Simple_repeat 3 42 0 24 0 8 0 chr3 152521268 152521331 -75003247 + GC_rich Low_complexity Low_complexity 1 24 0 58 17 0 0 chr3 152521408 152521468 -75003110 + GC_rich Low_complexity Low_complexity 1 60 0 21 57 0 0 chr3 152521834 152521869 -75002709 + GC_rich Low_complexity Low_complexity 1 35 0 22 56 0 0 chr3 152522298 152522334 -75002244 + GC_rich Low_complexity Low_complexity 1 36 0 221 250 39 16 chr3 152522482 152522610 -75001968 + (CGG)n Simple_repeat Simple_repeat 2 132 0 32 98 0 0 chr3 152522667 152522769 -75001809 + GC_rich Low_complexity Low_complexity 1 102 0 271 208 174 79 chr3 152523856 152524034 -75000544 - L1ME3A LINE L1 -8 6162 5968 2343 96 0 3 chr3 152525201 152525504 -74999074 - AluSg SINE Alu -8 302 1 2331 82 16 13 chr3 152525715 152526018 -74998560 - AluSp SINE Alu -9 304 1 1332 195 87 14 chr3 152526353 152526630 -74997948 - AluJo SINE Alu -5 297 1 368 136 34 0 chr3 152527062 152527121 -74997457 - AluJ/FLAM SINE Alu -241 61 1 25 51 0 0 chr3 152527230 152527269 -74997309 + AT_rich Low_complexity Low_complexity 1 39 0 1721 138 28 31 chr3 152527382 152527671 -74996907 + AluJo SINE Alu 1 288 -24 25 31 0 0 chr3 152527671 152527703 -74996875 + AT_rich Low_complexity Low_complexity 1 32 0 575 262 28 0 chr3 152527839 152527980 -74996598 - MIR SINE MIR -110 152 8 1951 132 20 3 chr3 152528437 152528733 -74995845 - AluSx SINE Alu -11 301 1 1941 139 10 0 chr3 152529843 152530144 -74994434 - AluSx SINE Alu -8 304 1 892 230 39 17 chr3 152530999 152531229 -74993349 + MER106A DNA MER1_type 1 235 -1 1483 168 73 14 chr3 152531336 152531622 -74992956 - AluJo SINE Alu -9 303 1 592 91 0 0 chr3 152531686 152531763 -74992815 - AluS SINE Alu -235 77 1 2307 103 0 7 chr3 152531769 152532079 -74992499 - AluSx SINE Alu -4 308 1 2276 103 0 7 chr3 152532376 152532678 -74991900 - AluSx SINE Alu -12 300 1 22 0 0 0 chr3 152533516 152533538 -74991040 + AT_rich Low_complexity Low_complexity 1 22 0 2367 76 14 0 chr3 152536657 152536947 -74987631 - AluSg SINE Alu -16 294 1 1217 146 94 38 chr3 152537524 152537791 -74986787 - AluJo SINE Alu -30 282 1 3023 189 93 22 chr3 152537791 152537985 -74986593 - L1MB7 LINE L1 -43 6141 5962 2271 93 13 10 chr3 152537985 152538296 -74986282 - AluSx SINE Alu 0 312 1 3023 189 93 22 chr3 152538296 152539245 -74985333 - L1MB7 LINE L1 -222 5962 4912 1641 159 51 11 chr3 152539280 152539556 -74985022 - AluJo SINE Alu -25 287 1 782 159 23 0 chr3 152540008 152540140 -74984438 - AluSg/x SINE Alu -18 294 160 1221 118 113 48 chr3 152540246 152540320 -74984258 - MSTA LTR MaLR -184 244 176 2006 120 33 0 chr3 152540320 152540596 -74983982 + AluSx SINE Alu 1 285 -27 1221 118 113 48 chr3 152540596 152540750 -74983828 - MSTA LTR MaLR -252 176 1 1222 239 25 0 chr3 152541064 152541344 -74983234 - AluJb SINE Alu -25 287 1 231 224 73 97 chr3 152541496 152541661 -74982917 + FRAM SINE Alu 1 152 -14 1130 97 34 0 chr3 152541953 152542128 -74982450 - Tigger7 DNA MER2_type -4 2483 2303 954 145 0 36 chr3 152542130 152542296 -74982282 - FRAM SINE Alu -19 157 1 595 83 0 42 chr3 152542296 152542392 -74982186 - Tigger7 DNA MER2_type -177 2410 2319 1409 194 7 18 chr3 152542406 152542684 -74981894 + Tigger7 DNA MER2_type 72 346 -204 287 247 52 13 chr3 152542681 152542758 -74981820 - Tigger7 DNA MER2_type -653 80 1 * 2226 96 0 0 chr3 152542903 152543196 -74981382 + AluSc SINE Alu 11 303 -6 871 205 147 0 chr3 152543604 152543794 -74980784 - AluJb SINE Alu -84 228 11 2162 111 7 0 chr3 152543921 152544227 -74980351 - AluSq SINE Alu -5 308 1 678 165 0 0 chr3 152544512 152544609 -74979969 + AluSg SINE Alu 2 98 -212 255 260 29 0 chr3 152594642 152594746 -74929832 + A-rich Low_complexity Low_complexity 2 108 0 378 264 138 47 chr3 152594751 152595164 -74929414 + L1M2 LINE L1 1736 4062 -2786 300 239 155 0 chr3 152596317 152596430 -74928148 + MLT1I LTR MaLR 318 403 -6 1840 186 23 3 chr3 152598562 152598916 -74925662 - MLT1A1 LTR MaLR -4 361 1 279 0 0 0 chr3 152599034 152599065 -74925513 + (CA)n Simple_repeat Simple_repeat 2 32 0 404 249 28 33 chr3 152599128 152599309 -74925269 + (CA)n Simple_repeat Simple_repeat 1 180 0 189 176 20 39 chr3 152601172 152601223 -74923355 - L2 LINE L2 -2 3311 3262 1052 229 11 69 chr3 152601700 152602062 -74922516 - L1M4 LINE L1 -957 5189 4849 2030 198 104 30 chr3 152602064 152602564 -74922014 - L1MDa LINE L1 -5899 641 105 1229 171 47 77 chr3 152602706 152602937 -74921641 + L1MD2 LINE L1 6068 6290 -69 2430 89 3 3 chr3 152602937 152603250 -74921328 - AluSq SINE Alu 0 313 1 1229 171 47 77 chr3 152603250 152603316 -74921262 + L1MD2 LINE L1 6290 6356 -3 368 165 202 46 chr3 152603742 152603851 -74920727 + L1ME1 LINE L1 5814 5939 -227 22 0 0 0 chr3 152605203 152605225 -74919353 + GC_rich Low_complexity Low_complexity 1 22 0 889 134 0 21 chr3 152605468 152605610 -74918968 - L1PA16 LINE L1 -33 6133 5995 2394 98 0 3 chr3 152605668 152605974 -74918604 - AluSc SINE Alu -4 305 1 285 29 0 0 chr3 152606001 152606035 -74918543 + (TG)n Simple_repeat Simple_repeat 1 34 0 26 0 0 0 chr3 152606618 152606644 -74917934 + AT_rich Low_complexity Low_complexity 1 26 0 289 241 133 12 chr3 152607353 152607436 -74917142 - L2 LINE L2 0 3272 3180 248 204 19 0 chr3 152607622 152607676 -74916902 - L2 LINE L2 -221 3051 2997 449 284 46 35 chr3 152607681 152607878 -74916700 - L2 LINE L2 -3 3310 3112 649 191 52 0 chr3 152608680 152608795 -74915783 + FLAM_A SINE Alu 1 121 -12 348 205 17 95 chr3 152609015 152609181 -74915397 + MER21B LTR ERV1 329 577 -354 197 250 44 15 chr3 152610563 152610631 -74913947 - L2 LINE L2 -206 3066 2997 619 190 52 9 chr3 152611633 152611749 -74912829 + FLAM_A SINE Alu 1 121 -12 747 158 0 15 chr3 152612090 152612223 -74912355 + FLAM_A SINE Alu 11 141 -1 1431 98 193 11 chr3 152613065 152613350 -74911228 + MER44D DNA MER2_type 1 607 -2 428 242 36 72 chr3 152614097 152614320 -74910258 - L1ME4a LINE L1 -293 5828 5614 924 266 95 37 chr3 152617378 152617788 -74906790 - MLT1J LTR MaLR -77 434 1 889 175 67 31 chr3 152619092 152619286 -74905292 + MER20 DNA MER1_type 2 202 -17 2057 135 10 7 chr3 152619491 152619795 -74904783 - AluJb SINE Alu -7 305 1 675 228 21 32 chr3 152621504 152621693 -74902885 - L1MC4 LINE L1 -167 7875 7689 1927 179 146 29 chr3 152621700 152622158 -74902420 + L1MC4 LINE L1 6699 7220 -822 2936 13 0 0 chr3 152622158 152622473 -74902105 + AluYb8 SINE Alu 1 315 -3 1927 179 146 29 chr3 152622473 152622506 -74902072 + L1MC4 LINE L1 7220 7248 -794 182 37 37 0 chr3 152622523 152622550 -74902028 + (CAAAA)n Simple_repeat Simple_repeat 2 29 0 214 333 13 0 chr3 152622845 152622920 -74901658 + L2 LINE L2 3188 3263 -9 1096 117 19 0 chr3 152623633 152623795 -74900783 - L1PA16 LINE L1 -7 6159 5995 2417 95 0 3 chr3 152623853 152624159 -74900419 - AluSc SINE Alu -4 305 1 339 25 0 0 chr3 152624183 152624223 -74900355 + (TG)n Simple_repeat Simple_repeat 1 40 0 210 37 0 0 chr3 152625088 152625115 -74899463 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 249 300 74 24 chr3 152625115 152625445 -74899133 + L1ME4a LINE L1 5602 5970 -151 661 289 13 17 chr3 152626637 152626872 -74897706 + MIR SINE MIR 25 258 -4 994 188 61 5 chr3 152628432 152628629 -74895949 - MER3 DNA MER1_type -1 208 1 232 243 97 19 chr3 152628859 152628962 -74895616 + MER5A DNA MER1_type 55 165 -24 202 345 0 0 chr3 152629030 152629114 -74895464 + L2 LINE L2 3162 3245 -27 25 31 0 0 chr3 152629640 152629672 -74894906 + AT_rich Low_complexity Low_complexity 1 32 0 550 302 100 57 chr3 152630226 152630894 -74893684 + L2 LINE L2 1846 2542 -772 1895 188 52 0 chr3 152630924 152631286 -74893292 + LTR65 LTR ERV1 289 669 0 397 301 83 33 chr3 152631288 152631564 -74893014 + L1M4 LINE L1 3928 4217 -1929 2048 139 3 0 chr3 152631612 152631907 -74892671 + AluSx SINE Alu 1 296 -16 2227 96 11 0 chr3 152631918 152632226 -74892352 + AluSp SINE Alu 1 311 0 21 0 0 0 chr3 152632271 152632292 -74892286 + AT_rich Low_complexity Low_complexity 1 21 0 328 183 37 24 chr3 152632408 152632490 -74892088 + L1M4 LINE L1 4497 4579 -1567 2938 193 60 18 chr3 152632608 152633542 -74891036 + L1MA9 LINE L1 5059 6031 -281 893 133 0 15 chr3 152633555 152633690 -74890888 + AluJ SINE Alu 1 133 -169 225 148 37 0 chr3 152633702 152633756 -74890822 + (CAAA)n Simple_repeat Simple_repeat 1 56 0 869 97 110 32 chr3 152633756 152633911 -74890667 + AluJ SINE Alu 129 295 -17 292 151 12 105 chr3 152633913 152633999 -74890579 + L1MA9 LINE L1 6029 6106 -206 246 197 42 14 chr3 152634010 152634081 -74890497 + L1MA9 LINE L1 6201 6273 -39 3656 174 98 31 chr3 152634614 152635352 -74889226 - MER109 Unknown Unknown -94 2338 1534 333 0 0 0 chr3 152635352 152635389 -74889189 + (TAA)n Simple_repeat Simple_repeat 2 38 0 3656 174 98 31 chr3 152635389 152635494 -74889084 - MER109 Unknown Unknown -898 1534 1438 1044 93 33 20 chr3 152635512 152635663 -74888915 + MER1B DNA MER1_type 187 339 0 * 7888 165 37 40 chr3 152635663 152635839 -74888739 - MER109 Unknown Unknown -987 1445 1270 5954 72 55 52 chr3 152635839 152636790 -74887788 + SVA Other Other 433 1386 0 7888 165 37 40 chr3 152636790 152638485 -74886093 - MER109 Unknown Unknown -1162 1270 1 809 106 28 50 chr3 152638674 152638815 -74885763 + MER51B-int LTR ERV1 37 174 -7642 18682 104 48 13 chr3 152638828 152643981 -74880597 + MER51B-int LTR ERV1 416 5234 -2303 7457 95 14 5 chr3 152644117 152645132 -74879446 + MER51B-int LTR ERV1 5269 6292 -1245 5052 119 118 98 chr3 152645129 152645759 -74878819 + MER51B-int LTR ERV1 6671 7336 -480 * 2408 72 0 3 chr3 152645759 152646064 -74878514 - AluY SINE Alu -7 304 1 5052 119 118 98 chr3 152646064 152646556 -74878022 + MER51B-int LTR ERV1 7336 7816 0 1984 119 102 34 chr3 152646557 152646910 -74877668 + MER51B LTR ERV1 1 377 0 1871 207 99 112 chr3 152646910 152648516 -74876062 - MER109 Unknown Unknown -1143 1289 1 24 53 0 0 chr3 152649048 152649086 -74875492 + AT_rich Low_complexity Low_complexity 1 38 0 317 311 179 25 chr3 152649099 152649619 -74874959 + L1MC4a LINE L1 5311 5910 -1898 23 0 0 0 chr3 152649712 152649735 -74874843 + AT_rich Low_complexity Low_complexity 1 23 0 281 263 53 0 chr3 152650978 152651054 -74873524 - L2 LINE L2 -2 3270 3191 616 238 181 24 chr3 152652147 152652310 -74872268 + MIR SINE MIR 5 210 -52 1633 150 20 24 chr3 152652310 152652603 -74871975 + AluJo SINE Alu 1 292 -20 616 238 181 24 chr3 152652603 152652649 -74871929 + MIR SINE MIR 210 247 -15 191 256 89 33 chr3 152652805 152652895 -74871683 + L2 LINE L2 2018 2112 -1202 802 153 0 8 chr3 152653167 152653291 -74871287 - FLAM_C SINE Alu -16 127 5 2652 126 11 38 chr3 152653355 152653808 -74870770 - MER65A LTR ERV1 0 445 5 441 270 97 45 chr3 152653941 152654252 -74870326 + MER102a DNA MER1_type 1 327 -3 1292 151 5 5 chr3 152656288 152656506 -74868072 - AluJb SINE Alu -8 304 87 245 400 30 0 chr3 152657699 152657799 -74866779 + L2 LINE L2 3158 3260 -12 2248 96 0 0 chr3 152658367 152658669 -74865909 - AluSx SINE Alu -10 302 1 187 333 56 0 chr3 152659094 152659184 -74865394 - MER5A DNA MER1_type -69 120 26 239 249 95 71 chr3 152659989 152660158 -74864420 - MIR SINE MIR -48 214 42 2193 94 3 0 chr3 152661582 152661879 -74862699 + AluSx SINE Alu 1 298 -14 2267 87 0 3 chr3 152661966 152662266 -74862312 - AluSx SINE Alu -13 299 1 1422 164 45 22 chr3 152662591 152662912 -74861666 + MER33 DNA MER1_type 1 313 -11 245 400 30 0 chr3 152663886 152663986 -74860592 + L2 LINE L2 3158 3260 -12 2236 93 0 3 chr3 152664554 152664855 -74859723 - AluSg SINE Alu -10 300 1 587 197 158 0 chr3 152665045 152665197 -74859381 + MER104 DNA MER2_type 1 176 -4 305 325 103 67 chr3 152665501 152665994 -74858584 - HAL1 LINE L1 -367 2140 1630 703 293 99 51 chr3 152666200 152666965 -74857613 - L1MEd LINE L1 -4869 1250 449 264 267 23 12 chr3 152667002 152667088 -74857490 - L1MEd LINE L1 -5783 336 250 2384 67 0 0 chr3 152667106 152667404 -74857174 - AluY SINE Alu -13 298 1 2079 128 3 0 chr3 152667406 152667712 -74856866 - AluSq SINE Alu -6 307 1 471 125 42 0 chr3 152668047 152668119 -74856459 - Tigger4(Zombi) DNA MER2_type -1 2730 2656 261 149 64 0 chr3 152668089 152668136 -74856442 - Tigger4(Zombi) DNA MER2_type -2681 50 1 * 181 267 22 0 chr3 152668360 152668405 -74856173 + L2 LINE L2 3262 3307 -6 404 184 69 11 chr3 152669400 152669487 -74855091 + MIR3 SINE MIR 114 205 -3 184 324 135 9 chr3 152670979 152671090 -74853488 - L2 LINE L2 -2 3311 3187 250 163 0 20 chr3 152671195 152671244 -74853334 + MER58 DNA MER1_type 2373 2420 0 414 0 0 0 chr3 152672011 152672057 -74852521 + (TG)n Simple_repeat Simple_repeat 2 47 0 21 0 0 0 chr3 152672458 152672479 -74852099 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 152673151 152673171 -74851407 + (T)n Simple_repeat Simple_repeat 1 20 0 466 261 37 22 chr3 152674882 152675016 -74849562 - MER5A DNA MER1_type 0 189 54 1405 115 35 9 chr3 152676492 152676718 -74847860 - AluSg/x SINE Alu -15 297 66 24 0 0 0 chr3 152681737 152681761 -74842817 + AT_rich Low_complexity Low_complexity 1 24 0 929 180 13 82 chr3 152684013 152684246 -74840332 - MER20 DNA MER1_type -2 217 1 364 290 138 14 chr3 152684366 152684504 -74840074 - MER5A DNA MER1_type 0 189 35 900 201 50 0 chr3 152684544 152684743 -74839835 + MER3 DNA MER1_type 1 209 0 229 269 42 42 chr3 152685196 152685315 -74839263 + MIR SINE MIR 18 136 -72 233 176 129 47 chr3 152686444 152686529 -74838049 + MIR SINE MIR 47 138 -124 362 296 20 0 chr3 152687163 152687261 -74837317 + MIR SINE MIR 36 135 -73 212 222 194 28 chr3 152687986 152688094 -74836484 + L2 LINE L2 3146 3271 -1 404 249 28 33 chr3 152688455 152688636 -74835942 + (TG)n Simple_repeat Simple_repeat 1 180 0 243 0 0 0 chr3 152688699 152688726 -74835852 + (TG)n Simple_repeat Simple_repeat 2 28 0 1872 184 23 3 chr3 152688844 152689198 -74835380 + MLT1A1 LTR MaLR 1 361 -4 1242 248 118 44 chr3 152690398 152690854 -74833724 - Charlie4a DNA MER1_type 0 508 19 204 302 128 0 chr3 152691817 152691903 -74832675 - MIR SINE MIR -101 161 65 195 42 0 0 chr3 152693195 152693219 -74831359 + (CA)n Simple_repeat Simple_repeat 1 24 0 263 236 11 34 chr3 152695525 152695614 -74828964 + MIR SINE MIR 36 122 -140 506 308 57 47 chr3 152695665 152696087 -74828491 + L1ME4a LINE L1 5693 6118 -3 381 316 52 31 chr3 152696365 152696558 -74828020 - MIR3 SINE MIR 0 208 12 881 267 226 8 chr3 152696799 152697192 -74827386 + MLT1J LTR MaLR 2 480 -31 472 250 16 0 chr3 152697740 152697864 -74826714 + L1ME LINE L1 6 131 -5939 1661 174 3 20 chr3 152697868 152698172 -74826406 + AluJb SINE Alu 1 299 -13 501 249 53 37 chr3 152698395 152698584 -74825994 + MLT1A1 LTR MaLR 2 193 -172 198 0 0 0 chr3 152699401 152699423 -74825155 + (A)n Simple_repeat Simple_repeat 1 22 0 877 184 94 71 chr3 152700138 152700348 -74824230 - ORSL DNA AcHobo -2 273 54 1924 179 54 5 chr3 152700348 152700716 -74823862 - MLT1B LTR MaLR 0 390 5 877 184 94 71 chr3 152700716 152700772 -74823806 - ORSL DNA AcHobo -221 54 1 1564 208 0 0 chr3 152700973 152701257 -74823321 - AluJb SINE Alu -28 284 1 1060 234 142 37 chr3 152702123 152702533 -74822045 + MLT1C LTR MaLR 7 459 -8 437 304 20 7 chr3 152705497 152705645 -74818933 - MER103 DNA DNA -2 164 15 279 114 0 0 chr3 152706099 152706143 -74818435 + (TG)n Simple_repeat Simple_repeat 1 44 0 584 257 35 6 chr3 152707148 152707319 -74817259 - MER20B DNA MER1_type -607 176 1 427 314 47 0 chr3 152707948 152708117 -74816461 + MIR SINE MIR 48 224 -38 248 232 18 0 chr3 152708421 152708477 -74816101 + MER21A LTR ERV1 752 808 -123 298 278 42 7 chr3 152710814 152710961 -74813617 - MIR SINE MIR -52 210 2 213 212 0 35 chr3 152711065 152711150 -74813428 - L2 LINE L2 -275 2997 2916 1431 210 253 39 chr3 152711502 152711992 -74812586 + MLT1G1 LTR MaLR 1 595 0 1891 157 25 20 chr3 152712022 152712378 -74812200 - THE1C LTR MaLR -2 373 16 442 334 56 44 chr3 152713082 152713423 -74811155 - L2 LINE L2 -1 3271 2927 293 164 14 27 chr3 152715609 152715682 -74808896 - L1MA9 LINE L1 -7 6305 6234 2523 128 39 9 chr3 152715687 152716125 -74808453 - Tigger2 DNA MER2_type -1 2717 2267 339 200 0 0 chr3 152716109 152716174 -74808404 - Tigger2 DNA MER2_type -2649 69 5 * 1106 164 34 5 chr3 152716206 152716413 -74808165 - Tigger3b DNA MER2_type -16 1215 1003 2299 133 40 16 chr3 152716536 152716981 -74807597 - Tigger3b DNA MER2_type -502 729 274 650 158 0 0 chr3 152716979 152717080 -74807498 - Tigger3b DNA MER2_type -1129 102 2 * 536 90 36 81 chr3 152717080 152717191 -74807387 - L1MA9 LINE L1 -78 6234 6129 996 156 61 5 chr3 152717201 152717413 -74807165 + L1MA9 LINE L1 5898 6121 -191 274 293 252 0 chr3 152717942 152718065 -74806513 + LTR67 LTR ERVL 36 189 -368 423 267 100 56 chr3 152718178 152718358 -74806220 + LTR67 LTR ERVL 362 549 -8 5085 251 73 32 chr3 152718795 152720582 -74803996 + L1MEc LINE L1 34 1893 -4503 503 306 102 20 chr3 152720571 152720826 -74803752 + L1MEc LINE L1 1472 1747 -4649 * 567 261 36 12 chr3 152720856 152721021 -74803557 + MIR SINE MIR 23 191 -71 249 209 233 0 chr3 152721026 152721112 -74803466 + L1MD3 LINE L1 7880 7985 -10 254 307 88 0 chr3 152723456 152723570 -74801008 - MIR3 SINE MIR -3 205 82 1710 241 96 59 chr3 152723756 152724328 -74800250 - MLT1E LTR MaLR 0 593 1 208 352 117 17 chr3 152728699 152728878 -74795700 - MIR SINE MIR -19 243 47 204 209 0 0 chr3 152728895 152728938 -74795640 + (CTGGGG)n Simple_repeat Simple_repeat 5 47 0 242 335 99 7 chr3 152729452 152729604 -74794974 - MIR3 SINE MIR 0 208 43 387 339 133 0 chr3 152730071 152730251 -74794327 + MIR SINE MIR 47 250 -12 23 42 0 21 chr3 152731264 152731291 -74793287 + AT_rich Low_complexity Low_complexity 1 28 -19 1980 117 0 30 chr3 152731291 152731590 -74792988 - AluSx SINE Alu -22 290 1 23 42 0 21 chr3 152731590 152731610 -74792968 + AT_rich Low_complexity Low_complexity 28 47 0 1716 114 0 0 chr3 152732168 152732404 -74792174 + AluSx SINE Alu 1 236 -76 225 249 6 158 chr3 152733301 152733466 -74791112 + L2 LINE L2 3039 3178 -94 253 318 51 51 chr3 152735125 152735301 -74789277 + MIR3 SINE MIR 30 205 -3 227 299 124 0 chr3 152735438 152735535 -74789043 - L2 LINE L2 -12 3301 3193 203 257 29 29 chr3 152735528 152735598 -74788980 - MIR SINE MIR -119 143 74 * 330 270 14 27 chr3 152736985 152737133 -74787445 + C-rich Low_complexity Low_complexity 4 149 0 307 265 0 20 chr3 152737325 152737427 -74787151 + G-rich Low_complexity Low_complexity 2 101 0 195 139 0 0 chr3 152737495 152737531 -74787047 + (GGA)n Simple_repeat Simple_repeat 1 36 0 23 68 0 0 chr3 152737753 152737797 -74786781 + GC_rich Low_complexity Low_complexity 1 44 0 608 254 30 24 chr3 152740103 152740268 -74784310 + MLT1A1 LTR MaLR 200 365 0 1616 281 56 45 chr3 152740307 152740850 -74783728 + L1MEc LINE L1 682 1218 -5178 2147 125 0 0 chr3 152740850 152741155 -74783423 + AluSx SINE Alu 1 305 -7 1616 281 56 45 chr3 152741155 152741736 -74782842 + L1MEc LINE L1 1218 1818 -4578 368 314 54 29 chr3 152741785 152741989 -74782589 - MIR SINE MIR -1 261 53 1026 349 99 25 chr3 152742063 152743141 -74781437 + L2 LINE L2 1527 2689 -625 1314 190 170 114 chr3 152743143 152743548 -74781030 - MSTD LTR MaLR 0 396 1 258 333 170 0 chr3 152743733 152743892 -74780686 + L2 LINE L2 2898 3083 -189 491 310 81 6 chr3 152743956 152744130 -74780448 + MER5A DNA MER1_type 1 187 -2 240 256 179 0 chr3 152744266 152744344 -74780234 - MIR SINE MIR -168 94 3 1091 253 114 49 chr3 152744640 152745935 -74778643 + L1ME LINE L1 267 1670 -4591 288 232 43 0 chr3 152746397 152746466 -74778112 - MIR SINE MIR -65 143 72 2091 114 9 35 chr3 152747147 152747463 -74777115 - AluJb SINE Alu -3 309 2 274 311 68 3 chr3 152748345 152748487 -74776091 + MIR SINE MIR 45 195 -67 282 237 140 0 chr3 152748750 152748843 -74775735 - MER103 DNA DNA -59 107 2 263 214 38 0 chr3 152750558 152750636 -74773942 + MLT1L LTR MaLR 110 251 -331 306 222 111 7 chr3 152751045 152751198 -74773380 - L1ME3A LINE L1 -229 5941 5773 198 0 0 0 chr3 152751233 152751255 -74773323 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 2140 113 0 0 chr3 152751268 152751552 -74773026 - AluSc SINE Alu -25 284 1 517 216 29 7 chr3 152751562 152751701 -74772877 - L1MD3 LINE L1 -16 7979 7838 294 247 113 13 chr3 152751718 152751868 -74772710 - L1ME3A LINE L1 -432 5730 5566 189 0 0 0 chr3 152751955 152751976 -74772602 + (TA)n Simple_repeat Simple_repeat 2 22 0 1506 169 50 36 chr3 152751976 152752336 -74772242 - L1MD1 LINE L1 -3 6633 6269 398 234 45 0 chr3 152752486 152752640 -74771938 - L1ME3A LINE L1 -222 5931 5771 3138 170 39 25 chr3 152752645 152753300 -74771278 - L1MD1 LINE L1 -358 6278 5607 1640 158 0 16 chr3 152753300 152753554 -74771024 - AluJo SINE Alu -57 255 6 3138 170 39 25 chr3 152753554 152753925 -74770653 - L1MD1 LINE L1 -1029 5607 5243 2433 210 78 26 chr3 152753927 152754508 -74770070 - L1MD1 LINE L1 -5899 641 31 2594 270 89 17 chr3 152754684 152756093 -74768485 - L1ME3A LINE L1 -12 6158 4608 252 59 0 0 chr3 152756093 152756127 -74768451 + (CA)n Simple_repeat Simple_repeat 2 35 0 2594 270 89 17 chr3 152756127 152756291 -74768287 - L1ME3A LINE L1 -1562 4608 4457 298 220 30 10 chr3 152756319 152756419 -74768159 - L1ME3A LINE L1 -1834 4312 4211 * 746 191 21 59 chr3 152756415 152756628 -74767950 - L1ME3A LINE L1 -678 5471 5266 1897 157 0 13 chr3 152756628 152756933 -74767645 - AluJo SINE Alu -11 301 1 746 191 21 59 chr3 152756933 152756955 -74767623 - L1ME3A LINE L1 -883 5266 5245 3833 233 36 24 chr3 152756971 152758155 -74766423 - L1MEc LINE L1 -2519 3610 2437 2161 161 69 30 chr3 152758155 152758621 -74765957 - MER66B LTR ERV1 0 486 3 3833 233 36 24 chr3 152758621 152759186 -74765392 - L1MEc LINE L1 -3692 2437 1880 1006 117 37 0 chr3 152759197 152759360 -74765218 + Tigger2 DNA MER2_type 315 483 -2235 601 214 5 65 chr3 152759382 152759495 -74765083 + Charlie5 DNA MER1_type 1227 1324 -1300 2444 61 0 3 chr3 152759495 152759790 -74764788 + AluY SINE Alu 1 294 -17 601 214 5 65 chr3 152759790 152759877 -74764701 + Charlie5 DNA MER1_type 1324 1415 -1209 588 207 45 17 chr3 152759874 152760053 -74764525 + Charlie5 DNA MER1_type 1679 1862 -750 * 1193 148 0 0 chr3 152760053 152760236 -74764342 - AluSg/x SINE Alu 0 312 130 2768 162 60 50 chr3 152760236 152760922 -74763656 + Charlie5 DNA MER1_type 1849 2545 -79 2416 73 3 3 chr3 152760922 152761223 -74763355 - AluY SINE Alu -10 301 1 2768 162 60 50 chr3 152761223 152761284 -74763294 + Charlie5 DNA MER1_type 2545 2604 -20 870 230 103 61 chr3 152761458 152761794 -74762784 - L1MEc LINE L1 -4720 1562 1242 2290 119 0 0 chr3 152761794 152762104 -74762474 - AluSx SINE Alu -2 310 1 870 230 103 61 chr3 152762104 152762390 -74762188 - L1MEc LINE L1 -5040 1242 760 228 261 54 43 chr3 152762672 152762764 -74761814 - L1MEc LINE L1 -5466 653 561 2001 112 100 26 chr3 152763635 152763974 -74760604 + THE1B LTR MaLR 1 364 0 215 308 0 13 chr3 152764443 152764521 -74760057 + CT-rich Low_complexity Low_complexity 5 81 0 1849 151 4 0 chr3 152764817 152765096 -74759482 + AluJb SINE Alu 1 280 -32 252 0 0 0 chr3 152765097 152765125 -74759453 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 236 252 26 7 chr3 152765680 152765835 -74758743 + (TGGA)n Simple_repeat Simple_repeat 1 158 0 318 318 55 9 chr3 152766033 152766143 -74758435 + MIR SINE MIR 6 120 -142 806 262 103 50 chr3 152766303 152766392 -74758186 + HAL1b LINE L1 650 733 -615 2114 132 0 19 chr3 152766392 152766702 -74757876 + AluSx SINE Alu 3 306 -6 806 262 103 50 chr3 152766702 152767269 -74757309 + HAL1b LINE L1 733 1341 -7 1658 181 133 31 chr3 152768039 152768497 -74756081 - MLT1D LTR MaLR 0 505 1 715 130 0 62 chr3 152769358 152769519 -74755059 + AluSp SINE Alu 146 296 -17 2010 112 0 24 chr3 152770185 152770480 -74754098 - AluSx SINE Alu -24 288 1 1754 246 59 14 chr3 152770496 152771469 -74753109 - L1ME3A LINE L1 -19 6151 5109 1241 273 146 12 chr3 152771514 152772013 -74752565 + L1ME4a LINE L1 18 583 -5840 1005 251 30 113 chr3 152772197 152773443 -74751135 + L1ME4a LINE L1 1386 2527 -4595 904 193 75 29 chr3 152773459 152773698 -74750880 + L1ME LINE L1 5562 5811 -355 2398 197 31 4 chr3 152773704 152774361 -74750217 + L1ME4a LINE L1 5894 6565 -472 1714 74 4 8 chr3 152774361 152774604 -74749974 + L1PA7 LINE L1 5865 6106 -48 313 0 0 0 chr3 152774979 152775015 -74749563 - U2 snRNA snRNA -152 36 1 198 355 43 43 chr3 152775015 152775156 -74749422 + L2 LINE L2 2741 2881 -433 1135 128 45 11 chr3 152775390 152775569 -74749009 - AluJo SINE Alu -8 304 120 1993 78 4 4 chr3 152775587 152775855 -74748723 + AluY SINE Alu 44 311 0 1278 134 121 21 chr3 152876156 152876395 -74648183 + MSTA LTR MaLR 166 428 0 364 149 54 0 chr3 152878104 152878178 -74646400 - L1MA10 LINE L1 -1 6333 6256 263 256 73 58 chr3 152878347 152878453 -74646125 + L1MC4 LINE L1 7142 7252 -790 2071 133 143 8 chr3 152878453 152878830 -74645748 + MSTA LTR MaLR 1 428 0 263 256 73 58 chr3 152878830 152878860 -74645718 + L1MC4 LINE L1 7252 7280 -762 229 217 14 14 chr3 152880106 152880175 -74644403 + L1ME4a LINE L1 6803 6871 -45 2367 85 7 3 chr3 152880977 152881284 -74643294 - AluSq SINE Alu -5 308 1 12482 191 35 75 chr3 152882086 152887231 -74637347 + L1M2b LINE L1 991 5998 -850 4582 126 18 37 chr3 152887214 152887795 -74636783 + L1PA16 LINE L1 5387 5951 -215 * 2298 108 0 7 chr3 152887795 152888100 -74636478 + AluSx SINE Alu 1 303 -9 4582 126 18 37 chr3 152888100 152888297 -74636281 + L1PA16 LINE L1 5951 6150 -16 * 11771 145 37 16 chr3 152888291 152890255 -74634323 + L1MA4A LINE L1 3025 4361 -1944 1340 220 24 20 chr3 152890255 152890551 -74634027 + AluJo SINE Alu 5 301 -11 11771 145 37 16 chr3 152890551 152891109 -74633469 + L1MA4A LINE L1 4361 4906 -1399 4006 136 49 19 chr3 152891109 152891807 -74632771 + LTR62 LTR ERVK 1 719 0 11771 145 37 16 chr3 152891807 152892535 -74632043 + L1MA4A LINE L1 4906 6302 -3 205 353 39 59 chr3 152893258 152893360 -74631218 + L2 LINE L2 3141 3240 -32 1856 135 7 4 chr3 152893506 152893837 -74630741 + AluSx SINE Alu 1 332 0 186 333 147 0 chr3 152894113 152894188 -74630390 - L2 LINE L2 -50 3222 3137 382 224 233 0 chr3 152894567 152894683 -74629895 + MIR3 SINE MIR 43 185 -23 21 57 0 0 chr3 152894859 152894894 -74629684 + AT_rich Low_complexity Low_complexity 1 35 0 219 279 158 13 chr3 152894936 152895094 -74629484 - MIR SINE MIR -44 218 38 1957 36 4 0 chr3 152895628 152895853 -74628725 + AluY SINE Alu 80 305 -6 232 275 43 0 chr3 152895899 152895968 -74628610 - MIR3 SINE MIR -12 196 125 1732 243 101 55 chr3 152896467 152898339 -74626239 + L1MC5 LINE L1 5255 7209 -752 916 158 62 67 chr3 152898611 152898740 -74625838 + MER3 DNA MER1_type 1 130 -79 2486 52 10 20 chr3 152898740 152899045 -74625533 - AluSg SINE Alu -8 302 1 916 158 62 67 chr3 152899045 152899124 -74625454 + MER3 DNA MER1_type 130 208 -1 1786 151 73 48 chr3 152899151 152899297 -74625281 - MER1B DNA MER1_type -2373 329 188 2144 99 17 7 chr3 152899297 152899589 -74624989 - AluSg SINE Alu -15 295 1 1786 151 73 48 chr3 152899589 152899905 -74624673 - MER1B DNA MER1_type -2514 188 1 382 271 132 35 chr3 152899906 152900216 -74624362 + L1MC5 LINE L1 7349 7688 -273 22 35 0 0 chr3 152900816 152900845 -74623733 + AT_rich Low_complexity Low_complexity 1 29 0 189 400 7 21 chr3 152902465 152902605 -74621973 - L2 LINE L2 -196 3076 2939 2502 57 3 22 chr3 152903506 152903822 -74620756 - AluY SINE Alu -1 310 1 411 245 129 18 chr3 152905998 152906161 -74618417 - MIR SINE MIR -12 250 70 351 316 153 40 chr3 152906224 152906550 -74618028 - L2 LINE L2 0 3272 2910 1215 206 120 94 chr3 152907007 152907473 -74617105 - MLT1H LTR MaLR 0 549 72 2358 69 3 40 chr3 152908273 152908577 -74616001 + AluSp SINE Alu 1 293 -20 460 299 60 20 chr3 152908716 152908967 -74615611 - MIR SINE MIR 0 262 2 348 307 49 31 chr3 152911083 152911246 -74613332 - L2 LINE L2 -35 3278 3113 1284 151 75 56 chr3 152911251 152911556 -74613022 - LTR16A1 LTR ERVL 0 457 147 276 140 40 20 chr3 152911672 152911722 -74612856 - LTR16A1 LTR ERVL -356 101 51 224 336 119 22 chr3 152912557 152912783 -74611795 - L2 LINE L2 -561 2753 2506 2049 106 6 75 chr3 152913095 152913415 -74611163 + AluSx SINE Alu 1 298 -14 186 343 143 0 chr3 152913416 152913486 -74611092 - MIR SINE MIR -162 100 21 2398 141 23 3 chr3 152914281 152914672 -74609906 - L1PA13 LINE L1 -36 6127 5729 762 235 18 0 chr3 152914915 152915085 -74609493 + MER45A DNA AcHobo 5 177 -1 313 206 0 0 chr3 152915660 152915723 -74608855 - MER116 DNA Mariner -1 79 17 207 0 0 0 chr3 152916685 152916708 -74607870 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2157 78 24 27 chr3 152916710 152917005 -74607573 - AluY SINE Alu -17 294 1 699 281 36 12 chr3 152917195 152917444 -74607134 + MIR SINE MIR 8 262 0 25 0 0 0 chr3 152917506 152917531 -74607047 + AT_rich Low_complexity Low_complexity 1 25 0 237 345 26 9 chr3 152917563 152917676 -74606902 + MIR SINE MIR 16 130 -78 2278 105 7 0 chr3 152918053 152918347 -74606231 - AluSx SINE Alu -16 296 1 192 111 0 0 chr3 152918361 152918397 -74606181 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 201 121 0 0 chr3 152918700 152918733 -74605845 + (TGGA)n Simple_repeat Simple_repeat 3 35 0 42 0 0 0 chr3 152919561 152919603 -74604975 + AT_rich Low_complexity Low_complexity 1 42 0 245 219 27 27 chr3 152920605 152920678 -74603900 + LTR50 LTR ERVL 716 788 -7 1110 303 45 10 chr3 152920678 152920825 -74603753 + L1MC4a LINE L1 5395 5535 -2273 2157 128 0 13 chr3 152920825 152921131 -74603447 - AluJb SINE Alu -10 302 1 1110 303 45 10 chr3 152921131 152921495 -74603083 + L1MC4a LINE L1 5535 5924 -1884 2114 151 3 49 chr3 152921705 152921990 -74602588 - MER7A DNA MER2_type -2692 346 82 1746 122 40 66 chr3 152921990 152922293 -74602285 - AluSx SINE Alu -17 295 1 2114 151 3 49 chr3 152922293 152922372 -74602206 - MER7A DNA MER2_type -2956 82 1 465 212 21 59 chr3 152922476 152922628 -74601950 + L1MC4 LINE L1 7839 8042 0 195 42 0 0 chr3 152923748 152923772 -74600806 + (T)n Simple_repeat Simple_repeat 1 24 0 1585 164 51 51 chr3 152924634 152924946 -74599632 + AluJo SINE Alu 1 312 0 1572 156 7 11 chr3 152925723 152925987 -74598591 + L1PA16 LINE L1 5892 6155 -6 2313 106 3 0 chr3 152925987 152926289 -74598289 - AluSg SINE Alu -7 303 1 197 302 16 0 chr3 152926455 152926518 -74598060 - L2 LINE L2 0 3313 3250 2220 101 17 0 chr3 152927364 152927661 -74596917 + AluSx SINE Alu 1 302 -10 842 237 124 24 chr3 152927831 152928080 -74596498 - MLT1L LTR MaLR 0 615 342 198 0 0 0 chr3 152928225 152928247 -74596331 + (CA)n Simple_repeat Simple_repeat 2 23 0 475 275 167 27 chr3 152928249 152928471 -74596107 + MLT1K LTR MaLR 314 566 -22 1627 173 40 80 chr3 152928565 152928941 -74595637 + L1MD3 LINE L1 7617 7977 -18 304 286 71 27 chr3 152928988 152929100 -74595478 - MIR3 SINE MIR -47 161 45 327 301 48 6 chr3 152930229 152930395 -74594183 + L3 LINE CR1 721 893 -684 285 321 51 22 chr3 152930387 152930524 -74594054 + MIR3 SINE MIR 40 180 -28 * 264 309 74 26 chr3 152930563 152930793 -74593785 + L1ME4a LINE L1 5779 6019 -102 1560 163 82 11 chr3 152931077 152931359 -74593219 - AluJb SINE Alu -10 302 1 357 253 41 34 chr3 152931918 152932064 -74592514 + L1MC4 LINE L1 6855 7001 -1041 243 259 0 0 chr3 152932265 152932319 -74592259 + (CATA)n Simple_repeat Simple_repeat 3 56 0 305 227 0 13 chr3 152934265 152934340 -74590238 + MLT1K LTR MaLR 488 561 -27 339 309 124 6 chr3 152934387 152934654 -74589924 + L3 LINE CR1 1156 1520 -57 269 108 16 5 chr3 152934961 152935017 -74589561 + MSTB LTR MaLR 53 110 -322 702 263 44 118 chr3 152935260 152935801 -74588777 + L2 LINE L2 2809 3309 -4 2105 137 134 8 chr3 152936193 152936573 -74588005 - MSTA LTR MaLR 0 428 1 336 326 15 22 chr3 152937201 152937336 -74587242 - L2 LINE L2 0 3313 3180 1206 272 23 64 chr3 152937761 152938243 -74586335 - LTR16B LTR ERVL 0 464 3 1250 238 124 20 chr3 152939112 152939515 -74585063 + Zaphod DNA AcHobo 163 607 -3424 365 200 0 0 chr3 152939542 152939602 -74584976 + MER115 DNA AcHobo 634 693 0 392 311 15 0 chr3 152940686 152940821 -74583757 - MIR3 SINE MIR -22 186 50 195 100 0 0 chr3 152941329 152941359 -74583219 + (CCCTAA)n Simple_repeat Simple_repeat 5 34 0 629 272 41 6 chr3 152941386 152941555 -74583023 - MER5B DNA MER1_type 0 178 4 3822 265 69 50 chr3 152941882 152943353 -74581225 + L1ME1 LINE L1 44 1565 -4831 1886 93 0 4 chr3 152943353 152943590 -74580988 + AluSg/x SINE Alu 66 301 -11 3822 265 69 50 chr3 152943590 152944121 -74580457 + L1ME1 LINE L1 1565 2084 -4312 819 235 27 76 chr3 152944156 152944240 -74580338 + L1ME1 LINE L1 2290 2377 -3838 2249 63 6 60 chr3 152944240 152944556 -74580022 + AluSc SINE Alu 1 299 -10 819 235 27 76 chr3 152944556 152944799 -74579779 + L1ME1 LINE L1 2377 2601 -3614 383 226 0 62 chr3 152944803 152944980 -74579598 + (TTTA)n Simple_repeat Simple_repeat 1 166 0 1348 189 78 23 chr3 152944980 152945324 -74579254 + L1ME1 LINE L1 2601 2963 -3252 378 0 0 0 chr3 152945333 152945375 -74579203 + (CA)n Simple_repeat Simple_repeat 2 43 0 600 211 0 0 chr3 152945377 152945486 -74579092 + MER21B-int LTR ERV1 1767 1875 -2316 * 4543 154 13 43 chr3 152945479 152946275 -74578303 + MER21B-int LTR ERV1 2718 3489 -702 3338 163 27 10 chr3 152946275 152946864 -74577714 + MER21B-int LTR ERV1 3593 4191 0 3622 176 107 11 chr3 152946918 152947656 -74576922 + MER21B LTR ERV1 15 823 -40 2769 223 76 12 chr3 152947719 152948110 -74576468 + L1ME1 LINE L1 2961 3326 -2889 2562 58 0 10 chr3 152948110 152948418 -74576160 + AluY SINE Alu 1 305 -6 2769 223 76 12 chr3 152948418 152948838 -74575740 + L1ME1 LINE L1 3326 3824 -2391 28 48 0 0 chr3 152948845 152948887 -74575691 + AT_rich Low_complexity Low_complexity 1 42 0 3296 203 81 42 chr3 152950425 152951336 -74573242 + L1ME1 LINE L1 3842 4716 -1519 2522 33 40 7 chr3 152951336 152951635 -74572943 - AluY SINE Alu 0 311 3 3296 203 81 42 chr3 152951635 152951972 -74572606 + L1ME1 LINE L1 4716 5038 -1197 1704 183 0 10 chr3 152951972 152952284 -74572294 + AluJb SINE Alu 1 309 -3 3296 203 81 42 chr3 152952284 152952331 -74572247 + L1ME1 LINE L1 5038 5082 -1153 291 54 0 0 chr3 152952331 152952368 -74572210 + (CA)n Simple_repeat Simple_repeat 2 38 0 3296 203 81 42 chr3 152952368 152953020 -74571558 + L1ME1 LINE L1 5082 5993 -242 1513 171 13 56 chr3 152953020 152953325 -74571253 + AluJo SINE Alu 1 292 -20 3296 203 81 42 chr3 152953325 152953424 -74571154 + L1ME1 LINE L1 5993 6087 -148 1032 176 0 17 chr3 152953429 152953605 -74570973 - MER45A DNA AcHobo -1 177 5 324 279 36 18 chr3 152953608 152953719 -74570859 + L1ME1 LINE L1 6083 6195 -40 303 227 61 55 chr3 152953956 152953987 -74570591 + MER3 DNA MER1_type 20 51 -158 678 234 109 0 chr3 152953987 152954171 -74570407 - MER3 DNA MER1_type 0 209 6 392 281 33 0 chr3 152954704 152954825 -74569753 - L3 LINE CR1 -47 1530 1406 1014 224 130 7 chr3 152956013 152956290 -74568288 - MER46C DNA MER2_type -22 316 6 300 304 196 0 chr3 152957770 152957882 -74566696 - MIR SINE MIR -32 230 97 227 306 0 82 chr3 152958295 152958429 -74566149 + L3b LINE CR1 1283 1405 -178 523 279 79 23 chr3 152958534 152958749 -74565829 - MIR SINE MIR -16 246 20 197 239 33 54 chr3 152959253 152959345 -74565233 + L2 LINE L2 2763 2852 -462 2104 145 0 3 chr3 152959458 152959762 -74564816 - AluSq SINE Alu -10 303 1 323 279 31 99 chr3 152959886 152960047 -74564531 + L2 LINE L2 3160 3309 -4 198 0 0 0 chr3 152960063 152960085 -74564493 + (GGGA)n Simple_repeat Simple_repeat 2 23 0 248 191 0 0 chr3 152961334 152961381 -74563197 - MIR3 SINE MIR -48 160 114 1883 143 14 10 chr3 152961712 152962006 -74562572 - AluJb SINE Alu -17 295 1 2342 102 0 0 chr3 152962113 152962408 -74562170 + AluSq SINE Alu 1 295 -18 243 0 0 0 chr3 152962450 152962477 -74562101 + (CA)n Simple_repeat Simple_repeat 2 28 0 205 189 0 0 chr3 152962987 152963024 -74561554 - MIR SINE MIR -6 256 220 254 314 67 57 chr3 152963084 152963294 -74561284 + L2 LINE L2 3097 3308 -5 395 284 78 7 chr3 152963368 152963509 -74561069 - MIR SINE MIR -65 197 47 321 262 39 0 chr3 152963657 152963760 -74560818 + MIR3 SINE MIR 88 194 -14 2635 160 5 0 chr3 152965240 152965666 -74558912 - MSTA LTR MaLR 0 428 1 1708 240 18 29 chr3 152965676 152966293 -74558285 + ERVL LTR ERVL 4525 5166 -598 397 278 0 9 chr3 152966415 152966530 -74558048 + ERVL LTR ERVL 5166 5279 -485 367 298 85 14 chr3 152966920 152967061 -74557517 + LTR50 LTR ERVL 3 153 -642 234 0 0 0 chr3 152967235 152967261 -74557317 + (TG)n Simple_repeat Simple_repeat 2 27 0 282 73 0 0 chr3 152967263 152967304 -74557274 + (GA)n Simple_repeat Simple_repeat 1 41 0 1105 263 38 8 chr3 152969045 152969410 -74555168 - MER113 DNA MER1_type? -48 473 98 832 305 74 36 chr3 152969720 152970408 -74554170 - L1MC4a LINE L1 -748 5398 5237 2225 96 14 7 chr3 152970411 152970704 -74553874 - AluSp SINE Alu -18 295 1 2308 110 3 0 chr3 152970705 152971014 -74553564 - AluSg SINE Alu 0 310 1 23 33 0 0 chr3 152971311 152971341 -74553237 + AT_rich Low_complexity Low_complexity 1 30 0 285 259 25 0 chr3 152971377 152971458 -74553120 - L1MC4a LINE L1 -1330 4816 4734 2370 99 3 0 chr3 152971678 152971990 -74552588 - AluSp SINE Alu 0 313 1 535 309 92 29 chr3 152972138 152972650 -74551928 - L1MC4a LINE L1 -1854 4292 3749 318 260 100 0 chr3 152972665 152972765 -74551813 - L2 LINE L2 -13 3300 3191 260 198 25 74 chr3 152972780 152972861 -74551717 - MLT1H LTR MaLR -37 512 436 310 151 268 9 chr3 152972880 152972988 -74551590 - L1ME3A LINE L1 0 6170 6034 263 254 0 0 chr3 152973175 152973230 -74551348 + MLT1I LTR MaLR 104 158 -251 396 267 33 106 chr3 152973556 152973771 -74550807 - L1MC4a LINE L1 -2596 3550 3321 2109 135 3 7 chr3 152973771 152974075 -74550503 - AluSx SINE Alu -9 303 1 396 267 33 106 chr3 152974075 152974500 -74550078 - L1MC4a LINE L1 -2825 3321 2957 369 0 0 0 chr3 152974566 152974607 -74549971 + (TG)n Simple_repeat Simple_repeat 2 42 0 230 178 44 0 chr3 152974737 152974827 -74549751 + (TA)n Simple_repeat Simple_repeat 1 94 0 5159 133 35 17 chr3 152974838 152975708 -74548870 - L1MC1 LINE L1 -45 6288 5404 1024 186 6 0 chr3 152976013 152976180 -74548398 + FRAM SINE Alu 1 167 -9 1002 189 53 97 chr3 152976182 152976542 -74548036 - LTR37B LTR ERV1 -116 352 9 1832 219 21 16 chr3 152977021 152977376 -74547202 + MER82 DNA MER2_type 11 367 -286 2008 223 17 22 chr3 152977376 152977790 -74546788 - MER65C LTR ERV1 0 461 48 586 88 0 0 chr3 152977790 152977870 -74546708 - MADE1 DNA Mariner 0 80 1 2008 223 17 22 chr3 152977870 152977918 -74546660 - MER65C LTR ERV1 -413 48 1 1382 213 33 7 chr3 152977918 152978190 -74546388 + MER82 DNA MER2_type 369 647 -6 277 248 33 50 chr3 152978455 152978576 -74546002 - HAL1b LINE L1 -923 425 307 326 224 112 8 chr3 152979569 152979703 -74544875 - MER113 DNA MER1_type? -373 148 1 318 26 0 0 chr3 152982613 152982652 -74541926 + (TG)n Simple_repeat Simple_repeat 2 40 0 273 269 138 8 chr3 152982776 152982906 -74541672 + MIR SINE MIR 46 192 -70 238 322 58 16 chr3 152983063 152983184 -74541394 - MLT1H1 LTR MaLR -400 155 30 1265 248 148 41 chr3 152983247 152984148 -74540430 + L2 LINE L2 2192 3224 -89 426 216 134 0 chr3 152984148 152984245 -74540333 - MER81 DNA DNA -2 112 3 1265 248 148 41 chr3 152984245 152984346 -74540232 + L2 LINE L2 3224 3313 0 283 323 57 50 chr3 152984347 152984460 -74540118 + L2 LINE L2 2681 2792 -522 2593 111 28 14 chr3 152984460 152984819 -74539759 - THE1B LTR MaLR 0 364 1 283 323 57 50 chr3 152984819 152984984 -74539594 + L2 LINE L2 2792 2961 -353 361 259 129 0 chr3 152985424 152985540 -74539038 - MIR SINE MIR -12 250 120 598 268 66 109 chr3 152985553 152986065 -74538513 + MLT1J LTR MaLR 20 509 -2 348 292 51 7 chr3 152986371 152986508 -74538070 - MIR SINE MIR -3 259 117 977 222 12 21 chr3 152986537 152986780 -74537798 + L1M4 LINE L1 4572 4812 -1334 * 1906 138 8 70 chr3 152986761 152987145 -74537433 - L1M1 LINE L1 -597 5703 5344 439 122 12 12 chr3 152987261 152987343 -74537235 + (TCCCC)n Simple_repeat Simple_repeat 4 85 0 2144 128 0 10 chr3 152987345 152987649 -74536929 - AluSg SINE Alu -9 301 1 969 118 7 0 chr3 152987649 152987784 -74536794 - AluSq/x SINE Alu -176 136 1 1763 152 14 3 chr3 152987789 152988079 -74536499 - AluJo SINE Alu -15 297 5 425 287 95 20 chr3 152988943 152989141 -74535437 - MIR SINE MIR -50 212 6 214 206 16 32 chr3 152990325 152990388 -74534190 - MER5B DNA MER1_type -85 93 32 195 42 0 0 chr3 152990499 152990523 -74534055 + (TTCA)n Simple_repeat Simple_repeat 2 25 0 298 267 0 30 chr3 152990712 152990813 -74533765 + (CTCTG)n Simple_repeat Simple_repeat 3 100 0 354 23 0 0 chr3 152990981 152991024 -74533554 + (TTA)n Simple_repeat Simple_repeat 1 43 0 1985 116 0 25 chr3 152991024 152991309 -74533269 - AluSg SINE Alu -32 278 1 231 167 24 0 chr3 152993625 152993667 -74530911 - MER103 DNA DNA -76 90 48 186 310 17 0 chr3 152993750 152993808 -74530770 + MIR SINE MIR 86 144 -118 2433 72 7 0 chr3 152994151 152994444 -74530134 + AluSq SINE Alu 1 295 -18 243 0 0 0 chr3 152994486 152994513 -74530065 + (CA)n Simple_repeat Simple_repeat 2 28 0 205 189 0 0 chr3 152995023 152995060 -74529518 - MIR SINE MIR -6 256 220 254 314 67 57 chr3 152995120 152995330 -74529248 + L2 LINE L2 3097 3308 -5 459 263 70 32 chr3 152995389 152995545 -74529033 - MIR SINE MIR -54 208 47 369 262 39 0 chr3 152995693 152995796 -74528782 + MIR3 SINE MIR 88 194 -14 2641 160 5 0 chr3 152997276 152997702 -74526876 - MSTA LTR MaLR 0 428 1 1725 240 18 29 chr3 152997712 152998329 -74526249 + ERVL LTR ERVL 4525 5166 -598 403 278 0 9 chr3 152998451 152998566 -74526012 + ERVL LTR ERVL 5166 5279 -485 369 298 85 14 chr3 152998956 152999097 -74525481 + LTR50 LTR ERVL 3 153 -642 234 0 0 0 chr3 152999271 152999297 -74525281 + (TG)n Simple_repeat Simple_repeat 2 27 0 282 73 0 0 chr3 152999299 152999340 -74525238 + (GA)n Simple_repeat Simple_repeat 1 41 0 1096 263 38 8 chr3 153001081 153001446 -74523132 - MER113 DNA MER1_type? -48 473 98 788 311 75 35 chr3 153001714 153002444 -74522134 - L1MC4a LINE L1 -748 5381 5220 2096 96 14 7 chr3 153002447 153002740 -74521838 - AluSp SINE Alu -18 295 1 2180 110 3 0 chr3 153002741 153003050 -74521528 - AluSg SINE Alu 0 310 1 23 33 0 0 chr3 153003347 153003377 -74521201 + AT_rich Low_complexity Low_complexity 1 30 0 283 259 25 0 chr3 153003413 153003494 -74521084 - L1MC4a LINE L1 -1330 4799 4717 2247 99 3 0 chr3 153003714 153004026 -74520552 - AluSp SINE Alu 0 313 1 495 309 92 29 chr3 153004174 153004686 -74519892 - L1MC4a LINE L1 -1854 4275 3732 357 260 100 0 chr3 153004701 153004801 -74519777 - L2 LINE L2 -13 3300 3191 260 198 25 74 chr3 153004816 153004897 -74519681 - MLT1H LTR MaLR -37 512 436 302 151 268 9 chr3 153004916 153005024 -74519554 - L1ME3A LINE L1 0 6170 6034 264 254 0 0 chr3 153005211 153005266 -74519312 + MLT1I LTR MaLR 104 158 -251 1136 288 58 101 chr3 153005446 153005807 -74518771 - L1MC4a LINE L1 -2446 3683 3308 1990 141 3 0 chr3 153005807 153006111 -74518467 - AluSx SINE Alu -7 305 1 1136 288 58 101 chr3 153006111 153006599 -74517979 - L1MC4a LINE L1 -2821 3308 2871 369 0 0 0 chr3 153006602 153006643 -74517935 + (TG)n Simple_repeat Simple_repeat 2 42 0 230 178 44 0 chr3 153006773 153006863 -74517715 + (TA)n Simple_repeat Simple_repeat 1 94 0 4101 179 35 17 chr3 153006874 153007744 -74516834 - L1MC1 LINE L1 -45 6288 5404 305 284 72 95 chr3 153007756 153007978 -74516600 - L1MC4a LINE L1 -3267 2862 2646 963 186 6 0 chr3 153008049 153008216 -74516362 + FRAM SINE Alu 1 167 -9 978 189 53 97 chr3 153008218 153008578 -74516000 - LTR37B LTR ERV1 -116 352 9 1824 219 21 16 chr3 153009062 153009417 -74515161 + MER82 DNA MER2_type 11 367 -286 1868 233 17 22 chr3 153009417 153009831 -74514747 - MER65C LTR ERV1 0 461 48 561 100 0 0 chr3 153009831 153009911 -74514667 - MADE1 DNA Mariner 0 80 1 1868 233 17 22 chr3 153009911 153009959 -74514619 - MER65C LTR ERV1 -413 48 1 1377 213 33 7 chr3 153009959 153010231 -74514347 + MER82 DNA MER2_type 369 647 -6 239 289 16 33 chr3 153010496 153010617 -74513961 - HAL1b LINE L1 -923 425 307 321 298 93 80 chr3 153010699 153011001 -74513577 - L1MC4a LINE L1 -4918 1201 896 316 224 112 8 chr3 153011610 153011744 -74512834 - MER113 DNA MER1_type? -373 148 1 318 26 0 0 chr3 153014654 153014693 -74509885 + (TG)n Simple_repeat Simple_repeat 2 40 0 337 274 133 7 chr3 153014812 153014947 -74509631 + MIR SINE MIR 41 192 -70 242 322 58 16 chr3 153015104 153015225 -74509353 - MLT1H1 LTR MaLR -400 155 30 1528 246 147 46 chr3 153015288 153016189 -74508389 + L2 LINE L2 2192 3224 -89 429 216 134 0 chr3 153016189 153016286 -74508292 - MER81 DNA DNA -2 112 3 1528 246 147 46 chr3 153016286 153016387 -74508191 + L2 LINE L2 3224 3313 0 379 328 123 35 chr3 153016388 153016501 -74508077 + L2 LINE L2 2681 2783 -530 2591 111 28 14 chr3 153016501 153016860 -74507718 - THE1B LTR MaLR 0 364 1 379 328 123 35 chr3 153016860 153017280 -74507298 + L2 LINE L2 2783 3263 -50 412 259 129 0 chr3 153017465 153017581 -74506997 - MIR SINE MIR -12 250 120 599 268 66 109 chr3 153017594 153018106 -74506472 + MLT1J LTR MaLR 20 509 -2 417 309 59 7 chr3 153018412 153018564 -74506014 - MIR SINE MIR -3 259 100 967 222 12 21 chr3 153018578 153018821 -74505757 + L1ME1 LINE L1 4572 4812 -1334 * 6508 159 17 24 chr3 153018802 153020384 -74504194 - L1M1 LINE L1 -597 5703 4135 479 202 0 19 chr3 153020384 153020488 -74504090 + L1ME1 LINE L1 4844 4945 -1201 1954 118 7 0 chr3 153020545 153020832 -74503746 + AluSx SINE Alu 1 289 -23 1391 51 8 19 chr3 153020836 153021087 -74503491 + (GAAA)n Simple_repeat Simple_repeat 1 249 0 3092 203 11 24 chr3 153021106 153022146 -74502432 + L1ME1 LINE L1 4972 6000 -166 2022 90 38 7 chr3 153022233 153022542 -74502036 - AluSq SINE Alu 0 313 1 1768 66 4 0 chr3 153022547 153022807 -74501771 - AluY SINE Alu 0 312 52 335 241 221 46 chr3 153023613 153023808 -74500770 - L2 LINE L2 -1 3312 3084 1094 231 49 81 chr3 153024932 153025002 -74499576 + MLT1E LTR MaLR 219 290 -303 1730 142 12 70 chr3 153025002 153025332 -74499246 + AluSx SINE Alu 1 311 -1 1094 231 49 81 chr3 153025332 153025646 -74498932 + MLT1E LTR MaLR 290 591 -2 445 248 8 43 chr3 153025647 153025764 -74498814 - L2 LINE L2 -30 3283 3171 1097 207 123 46 chr3 153025778 153025903 -74498675 + MLT1A1 LTR MaLR 17 131 -234 2229 96 0 0 chr3 153025903 153026205 -74498373 + AluY SINE Alu 1 302 -9 1097 207 123 46 chr3 153026205 153026403 -74498175 + MLT1A1 LTR MaLR 131 365 0 566 239 35 14 chr3 153026469 153026611 -74497967 - L2 LINE L2 -223 3090 2946 370 354 120 6 chr3 153027620 153027795 -74496783 + L1MEc LINE L1 1641 1835 -4561 448 252 87 43 chr3 153027804 153027851 -74496727 + L1MEc LINE L1 1874 1918 -4297 1893 124 7 3 chr3 153027851 153028154 -74496424 + AluSq SINE Alu 1 304 0 448 252 87 43 chr3 153028154 153028269 -74496309 + L1MEc LINE L1 1918 2027 -4188 1490 186 4 0 chr3 153028269 153028544 -74496034 - AluJb SINE Alu -16 296 21 448 252 87 43 chr3 153028544 153028810 -74495768 + L1MEc LINE L1 2027 2272 -3943 505 309 22 51 chr3 153028866 153029141 -74495437 + MLT1J LTR MaLR 245 511 0 840 305 42 23 chr3 153029486 153029794 -74494784 - L2 LINE L2 -1 3312 2999 231 232 0 58 chr3 153030046 153030115 -74494463 - MIR SINE MIR -84 178 114 360 275 129 57 chr3 153030904 153031129 -74493449 - MIR SINE MIR -12 250 10 219 246 16 16 chr3 153031159 153031220 -74493358 + CT-rich Low_complexity Low_complexity 3 63 0 1039 262 124 28 chr3 153031222 153031906 -74492672 - L2 LINE L2 0 3313 2551 1528 181 0 31 chr3 153032471 153032758 -74491820 + MLT1F LTR MaLR 265 542 0 278 275 76 29 chr3 153033002 153033173 -74491405 - MIR SINE MIR -21 241 63 641 203 32 0 chr3 153033278 153033401 -74491177 - MLT2C1 LTR ERVL 0 397 271 335 198 16 32 chr3 153033403 153033529 -74491049 + (TA)n Simple_repeat Simple_repeat 1 124 0 812 192 64 32 chr3 153033537 153033787 -74490791 + Charlie2 DNA MER1_type 2514 2771 -91 372 200 0 71 chr3 153034880 153034965 -74489613 - MIR SINE MIR -115 147 69 1790 198 10 50 chr3 153034978 153035136 -74489442 + L1ME1 LINE L1 5192 5355 -809 1764 147 27 20 chr3 153035136 153035436 -74489142 - AluSx SINE Alu -10 302 1 1790 198 10 50 chr3 153035436 153035762 -74488816 + L1ME1 LINE L1 5355 5669 -495 1664 93 0 0 chr3 153035767 153035983 -74488595 + AluSx SINE Alu 1 216 -96 492 231 15 108 chr3 153035983 153036047 -74488531 + L1ME1 LINE L1 5980 6048 -118 2111 117 0 16 chr3 153036047 153036364 -74488214 + AluSx SINE Alu 1 312 0 492 231 15 108 chr3 153036364 153036502 -74488076 + L1ME1 LINE L1 6048 6163 -3 2203 95 0 0 chr3 153036539 153036834 -74487744 + AluSg SINE Alu 1 295 -15 280 176 71 47 chr3 153037279 153037364 -74487214 + MER103 DNA DNA 36 122 -44 292 252 96 59 chr3 153038195 153038330 -74486248 + HAL1 LINE L1 262 401 -2106 2967 221 108 37 chr3 153038446 153039496 -74485082 + HAL1 LINE L1 578 1701 -806 1429 276 96 30 chr3 153039498 153040093 -74484485 + HAL1 LINE L1 1726 2375 -132 2166 114 0 0 chr3 153040093 153040399 -74484179 + AluSx SINE Alu 1 306 -6 1429 276 96 30 chr3 153040399 153040503 -74484075 + HAL1 LINE L1 2375 2471 -36 457 231 147 19 chr3 153040509 153040665 -74483913 - L1ME1 LINE L1 -1 6165 5990 303 262 228 56 chr3 153040819 153041052 -74483526 + L2 LINE L2 2995 3267 -5 1862 149 13 0 chr3 153041990 153042292 -74482286 - AluSx SINE Alu -6 306 1 389 304 61 14 chr3 153044514 153044662 -74479916 + MIR SINE MIR 35 189 -73 312 27 0 0 chr3 153045027 153045064 -74479514 + (CA)n Simple_repeat Simple_repeat 2 38 0 327 25 0 0 chr3 153047394 153047434 -74477144 + (TG)n Simple_repeat Simple_repeat 2 41 0 371 274 131 30 chr3 153048204 153048372 -74476206 - MIR SINE MIR -70 192 8 361 324 18 63 chr3 153049535 153049757 -74474821 + L3b LINE CR1 1338 1549 -34 389 258 135 6 chr3 153049885 153050048 -74474530 - L2 LINE L2 -508 2806 2623 249 287 115 11 chr3 153051430 153051517 -74473061 - MIR SINE MIR -151 111 16 30 27 0 0 chr3 153052022 153052059 -74472519 + AT_rich Low_complexity Low_complexity 1 37 0 264 353 66 0 chr3 153056356 153056492 -74468086 + MIR SINE MIR 48 192 -70 805 234 20 5 chr3 153056839 153057036 -74467542 - MER3 DNA MER1_type -1 208 9 208 276 75 67 chr3 153057733 153057867 -74466711 + MIR SINE MIR 96 230 -32 225 282 194 16 chr3 153057935 153058059 -74466519 + MIR SINE MIR 43 188 -74 2182 96 10 0 chr3 153058782 153059073 -74465505 - AluSx SINE Alu -18 294 1 300 306 0 0 chr3 153059234 153059319 -74465259 - MER94 DNA DNA 0 134 50 28 0 0 0 chr3 153064060 153064088 -74460490 + AT_rich Low_complexity Low_complexity 1 28 0 436 106 43 0 chr3 153066378 153066459 -74458119 - L1MB7 LINE L1 0 6174 6090 933 215 12 0 chr3 153066822 153066994 -74457584 - MER69A DNA AcHobo 0 177 4 429 269 23 58 chr3 153069638 153069809 -74454769 - L2 LINE L2 -7 3306 3142 222 196 0 0 chr3 153069810 153069856 -74454722 - MER5C DNA MER1_type 0 324 279 209 247 14 41 chr3 153069921 153069994 -74454584 - MER5C DNA MER1_type -212 112 42 * 343 290 78 78 chr3 153069988 153070205 -74454373 - L2 LINE L2 -162 3151 2935 200 348 24 12 chr3 153070700 153070864 -74453714 + (CA)n Simple_repeat Simple_repeat 1 166 0 690 251 70 10 chr3 153071503 153071722 -74452856 - MIR SINE MIR -13 249 20 1039 173 204 4 chr3 153071756 153072011 -74452567 + L1MC3 LINE L1 7479 7784 -1 2665 221 32 26 chr3 153072395 153073119 -74451459 - L1M4 LINE L1 -1690 4456 3729 266 333 50 0 chr3 153073119 153073239 -74451339 + L2 LINE L2 3146 3271 -1 358 258 11 0 chr3 153073766 153073859 -74450719 + MIR SINE MIR 169 262 0 330 295 19 0 chr3 153074887 153074992 -74449586 + L1ME4a LINE L1 5687 5793 -328 655 257 29 24 chr3 153075044 153075250 -74449328 + MER102b DNA MER1_type 87 293 -48 317 349 0 54 chr3 153075290 153075456 -74449122 + L2 LINE L2 2936 3092 -180 3256 191 69 24 chr3 153075504 153076256 -74448322 + L1MC4a LINE L1 7023 7808 0 317 319 12 89 chr3 153076273 153076442 -74448136 + L2 LINE L2 3117 3272 0 260 305 75 57 chr3 153076444 153076611 -74447967 + L1ME4a LINE L1 5835 5998 -123 2349 84 3 0 chr3 153076611 153076922 -74447656 + AluSp SINE Alu 2 313 0 260 305 75 57 chr3 153076922 153076970 -74447608 + L1ME4a LINE L1 5998 6044 -77 1942 131 9 37 chr3 153076970 153077291 -74447287 - AluSx SINE Alu 0 312 1 260 305 75 57 chr3 153077291 153077356 -74447222 + L1ME4a LINE L1 6044 6121 0 2046 181 63 25 chr3 153077610 153078052 -74446526 - MLT1C LTR MaLR 0 467 9 1804 206 65 74 chr3 153078074 153078628 -74445950 - MLT1H LTR MaLR 0 549 1 317 271 213 47 chr3 153079488 153079831 -74444747 + MLT1K LTR MaLR 189 588 0 198 282 214 0 chr3 153079843 153079946 -74444632 - L2 LINE L2 -16 3297 3173 254 208 108 67 chr3 153081235 153081355 -74443223 + L2 LINE L2 3146 3270 -2 2242 91 7 0 chr3 153083642 153083940 -74440638 - AluSc SINE Alu -9 300 1 201 377 75 0 chr3 153084283 153084389 -74440189 - MIR SINE MIR -118 144 31 284 290 114 95 chr3 153086595 153086782 -74437796 - L2 LINE L2 -1 3312 3130 1880 116 0 25 chr3 153086782 153087067 -74437511 + AluSg SINE Alu 1 278 -32 354 23 0 0 chr3 153087067 153087110 -74437468 + (TAA)n Simple_repeat Simple_repeat 1 43 0 284 290 114 95 chr3 153087110 153087404 -74437174 - L2 LINE L2 -182 3131 2821 181 239 22 0 chr3 153087515 153087561 -74437017 + L2 LINE L2 3248 3294 -19 195 42 0 0 chr3 153087568 153087592 -74436986 + (TGAA)n Simple_repeat Simple_repeat 2 25 0 247 268 12 24 chr3 153087703 153087785 -74436793 + MER5B DNA MER1_type 32 112 -66 484 290 93 20 chr3 153088949 153089147 -74435431 + MIR SINE MIR 6 212 -50 1695 152 14 3 chr3 153090011 153090301 -74434277 + AluJo SINE Alu 5 297 -15 902 126 7 0 chr3 153090306 153090441 -74434137 + AluSq/x SINE Alu 1 136 -176 1755 120 4 12 chr3 153090441 153090699 -74433879 + AluSg SINE Alu 1 256 -54 380 326 71 0 chr3 153090773 153090914 -74433664 + LTR50 LTR ERVL 3 153 -642 234 0 0 0 chr3 153091088 153091114 -74433464 + (TG)n Simple_repeat Simple_repeat 2 27 0 282 73 0 0 chr3 153091116 153091157 -74433421 + (GA)n Simple_repeat Simple_repeat 1 41 0 495 167 0 0 chr3 153091906 153091996 -74432582 + GA-rich Low_complexity Low_complexity 2 91 0 1200 135 25 108 chr3 153092095 153092420 -74432158 + L1MA8 LINE L1 5994 6291 0 285 340 75 25 chr3 153092842 153093001 -74431577 - MIR SINE MIR -75 187 21 296 279 93 37 chr3 153093095 153093256 -74431322 - L1ME4a LINE L1 -219 5902 5733 606 241 14 0 chr3 153095218 153095359 -74429219 + MER5B DNA MER1_type 36 178 0 289 358 52 57 chr3 153095399 153095765 -74428813 + L2 LINE L2 2903 3266 -6 310 320 144 58 chr3 153096879 153097226 -74427352 - LTR16A LTR ERVL -9 441 65 184 42 0 0 chr3 153097233 153097257 -74427321 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 1940 95 0 21 chr3 153097257 153097540 -74427038 - AluSc SINE Alu -1 301 2 968 256 65 37 chr3 153097940 153098292 -74426286 + L1MC4a LINE L1 5254 5615 -2193 825 242 135 9 chr3 153098299 153098514 -74426064 + MIR SINE MIR 2 243 -19 727 224 68 40 chr3 153098521 153098766 -74425812 + L1MC4a LINE L1 5598 5805 -369 727 222 188 41 chr3 153098821 153099114 -74425464 + MER46C DNA MER2_type 1 336 -2 2445 62 0 3 chr3 153099212 153099519 -74425059 + AluSc SINE Alu 1 306 -3 263 288 27 0 chr3 153099796 153099941 -74424637 - L1MC/D LINE L1 -297 5824 5759 485 289 19 6 chr3 153100381 153100537 -74424041 + HAL1 LINE L1 1339 1496 -1011 752 253 30 56 chr3 153200731 153200964 -74323614 + MIR SINE MIR 33 259 -3 242 79 0 26 chr3 153201708 153201746 -74322832 - MIR SINE MIR -140 68 32 2461 70 3 0 chr3 153201758 153202056 -74322522 - AluY SINE Alu -12 299 1 422 256 25 41 chr3 153204390 153204511 -74320067 + L2 LINE L2 3195 3313 0 374 337 26 48 chr3 153205893 153206347 -74318231 + LTR67 LTR ERVL 114 557 0 557 298 21 5 chr3 153210212 153210403 -74314175 + MER117 DNA MER1_type 1 194 -3 183 80 0 0 chr3 153210708 153210733 -74313845 + (A)n Simple_repeat Simple_repeat 1 25 0 259 305 63 0 chr3 153211251 153211346 -74313232 + L2 LINE L2 3169 3269 -3 1895 186 21 43 chr3 153211366 153211834 -74312744 + MLT1C LTR MaLR 8 465 -2 330 213 13 0 chr3 153211893 153211968 -74312610 + MER96 DNA MER1_type? 9 84 -91 436 267 82 7 chr3 153212023 153212158 -74312420 - MIR3 SINE MIR -10 198 54 217 273 93 65 chr3 153212379 153212518 -74312060 + MIR3 SINE MIR 64 206 -2 2248 181 51 31 chr3 153212901 153213349 -74311229 + MSTB2 LTR MaLR 1 457 0 239 213 19 19 chr3 153213955 153214063 -74310515 + CT-rich Low_complexity Low_complexity 1 108 0 414 355 176 23 chr3 153214066 153214322 -74310256 - L2 LINE L2 -22 3250 2956 5939 96 14 17 chr3 153214651 153215150 -74309428 - L1PA11 LINE L1 0 6174 5676 2492 82 0 3 chr3 153215150 153215453 -74309125 - AluY SINE Alu -9 302 1 5939 96 14 17 chr3 153215453 153215849 -74308729 - L1PA11 LINE L1 -498 5676 5281 1002 179 5 23 chr3 153215875 153216093 -74308485 - L1PA11 LINE L1 -1288 4858 4645 243 236 22 11 chr3 153216737 153216826 -74307752 - L1MC4 LINE L1 -1339 6703 6614 * 249 281 0 0 chr3 153216818 153216907 -74307671 + L1MC4 LINE L1 6614 6702 -1340 225 292 0 0 chr3 153216949 153217038 -74307540 - L1MC4 LINE L1 -1339 6703 6615 * 233 241 72 0 chr3 153216961 153217044 -74307534 + L1MC4 LINE L1 6614 6702 -1340 213 139 28 0 chr3 153217045 153217081 -74307497 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 2030 104 0 25 chr3 153217160 153217477 -74307101 + L1P LINE L1 3993 4301 -1845 737 229 124 40 chr3 153217546 153217869 -74306709 + HAL1 LINE L1 2158 2507 0 984 276 113 63 chr3 153217877 153218131 -74306447 - L2 LINE L2 -624 2690 2450 518 236 93 6 chr3 153218131 153218292 -74306286 + MER96 DNA MER1_type 1 175 0 984 276 113 63 chr3 153218292 153218701 -74305877 - L2 LINE L2 -864 2450 1994 329 241 72 0 chr3 153219001 153219084 -74305494 - L2 LINE L2 -2 3270 3182 643 251 42 75 chr3 153220383 153220690 -74303888 + Tigger8 DNA MER2_type 220 516 -150 616 304 111 15 chr3 153220953 153221223 -74303355 - L3 LINE CR1 -193 1384 1089 318 283 113 53 chr3 153221223 153221470 -74303108 + L1ME LINE L1 5576 5837 -284 234 240 0 0 chr3 153221508 153221558 -74303020 + (CA)n Simple_repeat Simple_repeat 2 51 0 215 355 0 0 chr3 153221722 153221784 -74302794 - L3 LINE CR1 -473 1104 1043 232 279 62 54 chr3 153221811 153221940 -74302638 - L3 LINE CR1 -625 952 823 611 210 25 49 chr3 153222265 153222427 -74302151 + MIR SINE MIR 71 228 -34 263 246 0 0 chr3 153223317 153223374 -74301204 + (CA)n Simple_repeat Simple_repeat 2 58 0 708 286 56 77 chr3 153224723 153225243 -74299335 - MLT1J LTR MaLR 0 511 3 306 212 15 0 chr3 153225439 153225505 -74299073 + MER81 DNA DNA 47 113 -1 870 222 48 5 chr3 153225564 153225771 -74298807 + Charlie1b DNA MER1_type 7 222 -301 3032 41 0 8 chr3 153225773 153226138 -74298440 + L1PA5 LINE L1 5786 6147 -7 25 0 0 0 chr3 153226138 153226163 -74298415 + AT_rich Low_complexity Low_complexity 1 25 0 1724 140 33 0 chr3 153226245 153226488 -74298090 + AluSg SINE Alu 1 251 -59 383 239 55 0 chr3 153226739 153226848 -74297730 - L1MC5 LINE L1 -108 7853 7739 2154 132 0 0 chr3 153227274 153227563 -74297015 + AluJb SINE Alu 1 289 -23 425 270 113 54 chr3 153230056 153230278 -74294300 + MIR SINE MIR 2 236 -26 225 388 18 12 chr3 153231699 153231864 -74292714 + L2 LINE L2 2035 2200 -1114 357 159 142 35 chr3 153232043 153232156 -74292422 + MIR SINE MIR 124 248 -14 244 330 88 33 chr3 153232193 153232408 -74292170 + L2 LINE L2 2245 2471 -843 1572 192 80 87 chr3 153232487 153233075 -74291503 + L1MB5 LINE L1 5585 6168 -6 273 57 0 0 chr3 153234178 153234213 -74290365 + (T)n Simple_repeat Simple_repeat 1 35 0 868 250 16 0 chr3 153234587 153234771 -74289807 + MER5A DNA MER1_type 3 189 0 205 289 89 11 chr3 153235100 153235190 -74289388 + L2 LINE L2 3177 3273 -40 235 349 67 11 chr3 153235404 153235584 -74288994 + MIR SINE MIR 17 204 -58 421 198 71 71 chr3 153235584 153235710 -74288868 - LTR16C LTR ERVL -4 487 362 2362 97 0 0 chr3 153235835 153236134 -74288444 + AluSg SINE Alu 1 299 -11 423 324 11 51 chr3 153236474 153236587 -74287991 + L2 LINE L2 3104 3220 -52 7296 48 1 11 chr3 153236587 153238002 -74286576 + L1PA6 LINE L1 4745 6154 0 3011 63 5 0 chr3 153238002 153238380 -74286198 + L1PA6 LINE L1 5770 6149 -5 423 324 11 51 chr3 153238380 153238441 -74286137 + L2 LINE L2 3218 3272 0 589 341 0 5 chr3 153238574 153238788 -74285790 + L1MEc LINE L1 36 248 -6148 670 188 24 36 chr3 153238847 153239012 -74285566 + L1MA10 LINE L1 6171 6333 -1 1641 157 0 11 chr3 153239101 153239362 -74285216 + AluJo SINE Alu 1 258 -54 1876 201 22 8 chr3 153240599 153240967 -74283611 - MER70B LTR ERVL -102 476 104 1112 178 61 36 chr3 153240967 153241318 -74283260 - MSTD LTR MaLR 0 396 1 676 148 0 9 chr3 153241319 153241427 -74283151 - MER70A LTR ERVL -365 107 1 243 0 0 0 chr3 153241904 153241931 -74282647 + (CA)n Simple_repeat Simple_repeat 1 27 0 2350 88 0 0 chr3 153243322 153243664 -74280914 + AluY SINE Alu 1 311 0 299 284 29 10 chr3 153243950 153244052 -74280526 + HAL1b LINE L1 827 930 -418 807 298 117 5 chr3 153244225 153244635 -74279943 - L1ME3A LINE L1 -224 5946 5491 * 2270 173 42 13 chr3 153244622 153245143 -74279435 - L1M4 LINE L1 -378 5806 5271 1223 161 18 44 chr3 153245143 153245417 -74279161 - L1PB2 LINE L1 0 6151 5885 1880 121 86 0 chr3 153245423 153245637 -74278941 + L1PB1 LINE L1 5552 5803 -348 366 23 0 0 chr3 153245637 153245680 -74278898 + (TG)n Simple_repeat Simple_repeat 1 43 0 1880 121 86 0 chr3 153245680 153245780 -74278798 + L1PB1 LINE L1 5803 5893 -258 346 243 14 0 chr3 153245780 153245854 -74278724 - L1ME3A LINE L1 -671 5491 5417 379 239 11 11 chr3 153245855 153246022 -74278556 + MLT1G LTR MaLR 3 209 -340 406 231 89 23 chr3 153246158 153246348 -74278230 + MLT1G LTR MaLR 291 549 -41 1700 292 114 36 chr3 153246385 153248065 -74276513 - L1ME3A LINE L1 -747 5399 3590 2498 204 2 2 chr3 153248173 153248628 -74275950 - MER82 DNA MER2_type 0 653 199 247 341 15 15 chr3 153248905 153249037 -74275541 + Tigger2 DNA MER2_type 1060 1191 -1527 617 235 83 0 chr3 153249092 153249224 -74275354 - MER82 DNA MER2_type -510 143 1 1495 234 23 14 chr3 153249499 153249853 -74274725 - L1MD2 LINE L1 -409 5950 5594 439 279 84 14 chr3 153249844 153250059 -74274519 - L1MD2 LINE L1 -1945 4201 3972 * 1739 179 62 29 chr3 153250062 153250447 -74274131 - MLT1C LTR MaLR -7 460 63 324 319 17 70 chr3 153250525 153250641 -74273937 - HAL1b LINE L1 -972 376 255 1509 250 113 31 chr3 153250641 153251121 -74273457 + LTR40a LTR ERVL 1 519 0 324 319 17 70 chr3 153251121 153251361 -74273217 - HAL1b LINE L1 -1093 255 39 216 254 0 0 chr3 153252093 153252148 -74272430 + CT-rich Low_complexity Low_complexity 4 58 0 1137 289 73 19 chr3 153252372 153253067 -74271511 - L1MD2 LINE L1 -3213 2933 2201 261 234 95 36 chr3 153253227 153253364 -74271214 + HAL1b LINE L1 954 1098 -250 250 158 50 73 chr3 153253690 153253805 -74270773 + MER53 DNA DNA 1 184 -5 358 336 7 21 chr3 153254129 153254269 -74270309 + MIR SINE MIR 20 157 -105 557 242 145 45 chr3 153254461 153254792 -74269786 + L1MC4a LINE L1 5786 6149 -1659 28 61 0 0 chr3 153254799 153254848 -74269730 + AT_rich Low_complexity Low_complexity 1 49 0 225 139 0 0 chr3 153254905 153254948 -74269630 + (TG)n Simple_repeat Simple_repeat 2 44 0 250 262 19 19 chr3 153255399 153255502 -74269076 - L1ME4a LINE L1 -73 6048 5946 280 333 95 16 chr3 153255607 153255733 -74268845 + L2 LINE L2 3137 3272 0 548 306 56 60 chr3 153255744 153256227 -74268351 - L1ME4a LINE L1 -344 5777 5297 508 192 24 154 chr3 153256343 153256551 -74268027 - L1MC5 LINE L1 -50 7911 7731 465 62 0 0 chr3 153257738 153257803 -74266775 + (TG)n Simple_repeat Simple_repeat 2 66 0 410 306 15 0 chr3 153258654 153258788 -74265790 + Charlie8 DNA MER1_type 88 223 -2194 1662 180 41 86 chr3 153258875 153259409 -74265169 - MER69 DNA AcHobo 0 2526 2017 2482 265 73 6 chr3 153259463 153260160 -74264418 - MER69 DNA AcHobo -1782 744 1 678 261 95 49 chr3 153260821 153261105 -74263473 - MLT1H LTR MaLR -252 297 1 716 325 77 11 chr3 153261208 153261494 -74263084 + L3 LINE CR1 498 802 -775 200 206 0 0 chr3 153261512 153261546 -74263032 - L2 LINE L2 -16 3256 3223 8923 208 24 21 chr3 153261623 153264792 -74259786 + L1MB8 LINE L1 3079 6178 0 301 250 240 10 chr3 153264836 153264940 -74259638 - MER5A DNA MER1_type -1 188 61 1012 102 0 29 chr3 153264941 153265078 -74259500 + FLAM_C SINE Alu 1 133 0 277 309 62 12 chr3 153265156 153265237 -74259341 - MIR SINE MIR -154 108 24 734 302 76 67 chr3 153265246 153265785 -74258793 + L3 LINE CR1 858 1401 -176 1353 276 16 26 chr3 153265800 153266264 -74258314 - MLT1K LTR MaLR -33 555 47 308 247 21 75 chr3 153266299 153266392 -74258186 + L3 LINE CR1 1398 1485 -92 195 69 0 0 chr3 153268699 153268728 -74255850 + (A)n Simple_repeat Simple_repeat 1 29 0 358 256 23 0 chr3 153269808 153269894 -74254684 + L1MC5 LINE L1 7812 7899 -62 34 0 0 0 chr3 153269917 153269951 -74254627 + AT_rich Low_complexity Low_complexity 1 34 0 320 265 29 0 chr3 153270007 153270075 -74254503 + MER5A DNA MER1_type 11 80 -109 661 246 10 46 chr3 153270298 153270493 -74254085 - MIR SINE MIR -19 243 56 589 284 142 17 chr3 153270643 153270988 -74253590 - MLT1L LTR MaLR -102 513 126 2853 222 160 89 chr3 153271335 153272190 -74252388 + HAL1 LINE L1 574 1367 -1140 2205 116 30 0 chr3 153272190 153272493 -74252085 + AluSx SINE Alu 1 312 0 2853 222 160 89 chr3 153272493 153273224 -74251354 + HAL1 LINE L1 1367 2306 -201 2256 110 3 3 chr3 153273224 153273533 -74251045 + AluSc SINE Alu 1 309 0 2853 222 160 89 chr3 153273533 153273748 -74250830 + HAL1 LINE L1 2306 2504 -3 661 225 12 19 chr3 153275644 153275804 -74248774 - AluJb SINE Alu -152 160 2 306 306 148 22 chr3 153275888 153276117 -74248461 + L3 LINE CR1 1138 1395 -182 332 176 44 15 chr3 153276417 153276485 -74248093 - MLT1L LTR MaLR -543 72 3 200 207 172 0 chr3 153276514 153276572 -74248006 - MIR SINE MIR -118 144 77 196 312 132 39 chr3 153276658 153277097 -74247481 - L2 LINE L2 -798 2516 2037 201 236 348 0 chr3 153277349 153277438 -74247140 + L2 LINE L2 3153 3272 0 342 233 30 53 chr3 153277549 153277682 -74246896 - MLT1C LTR MaLR 0 467 338 2550 162 122 2 chr3 153277949 153278400 -74246178 + MLT1D LTR MaLR 1 505 0 552 291 110 18 chr3 153278938 153279165 -74245413 - MIR SINE MIR 0 262 15 2728 13 0 3 chr3 153279209 153279513 -74245065 - AluY SINE Alu -8 303 1 229 239 16 50 chr3 153279817 153279912 -74244666 - MIR SINE MIR -84 124 38 2074 189 12 52 chr3 153281565 153281968 -74242610 + MLT1B LTR MaLR 3 389 -1 220 139 23 0 chr3 153281999 153282042 -74242536 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 1967 61 4 12 chr3 153282237 153282482 -74242096 - L1PA4 LINE L1 -2 6153 5911 196 308 192 7 chr3 153282643 153282789 -74241789 - MIR SINE MIR -11 251 79 22 0 0 0 chr3 153283559 153283581 -74240997 + AT_rich Low_complexity Low_complexity 1 22 0 1058 200 11 0 chr3 153284143 153284328 -74240250 - MER5A DNA MER1_type 0 189 3 444 276 75 95 chr3 153284420 153284873 -74239705 - L2 LINE L2 0 3272 2829 471 142 372 0 chr3 153284913 153285026 -74239552 + MER5A DNA MER1_type 1 155 -34 600 281 113 0 chr3 153286630 153286790 -74237788 + MER45A DNA AcHobo 1 178 0 186 279 23 0 chr3 153286910 153286953 -74237625 - L2 LINE L2 -12 3260 3217 456 317 76 23 chr3 153286991 153287417 -74237161 - L2 LINE L2 -166 3106 2660 907 249 188 38 chr3 153287838 153288211 -74236367 + MLT1E3 LTR MaLR 1 429 -195 725 194 54 38 chr3 153288350 153288536 -74236042 + MER5A DNA MER1_type 1 189 0 501 273 64 29 chr3 153288550 153288722 -74235856 + MER5B DNA MER1_type 1 178 0 263 411 44 11 chr3 153289312 153289492 -74235086 - MER5A DNA MER1_type -3 186 1 1442 67 10 10 chr3 153290411 153290604 -74233974 + L1PA7 LINE L1 5791 5983 -171 830 200 14 0 chr3 153290604 153290749 -74233829 - MER5A DNA MER1_type -40 149 3 1115 125 16 62 chr3 153290773 153290965 -74233613 + L1PA6 LINE L1 5972 6154 0 182 108 54 0 chr3 153291639 153291676 -74232902 + C-rich Low_complexity Low_complexity 3 41 0 492 275 53 89 chr3 153292878 153293180 -74231398 + L2 LINE L2 3015 3305 -8 1107 245 108 6 chr3 153293997 153294320 -74230258 + LTR16C LTR ERVL 69 424 -67 1253 258 40 35 chr3 153294329 153294725 -74229853 - LTR16A1 LTR ERVL -11 446 49 265 141 14 0 chr3 153294768 153294821 -74229757 + LTR16C LTR ERVL 378 474 -17 1313 165 116 0 chr3 153295414 153295681 -74228897 - MER33 DNA MER1_type -16 308 11 198 390 113 13 chr3 153296243 153296543 -74228035 - L3 LINE CR1 -881 696 367 2235 95 16 10 chr3 153296765 153297071 -74227507 - AluSg SINE Alu -2 308 1 2210 117 3 0 chr3 153297254 153297553 -74227025 - AluSq SINE Alu -13 300 1 225 241 0 0 chr3 153297557 153297615 -74226963 - L1MC/D LINE L1 -1985 5823 5766 2270 61 7 7 chr3 153297694 153298014 -74226564 - AluY SINE Alu 0 320 1 506 306 86 10 chr3 153298455 153298664 -74225914 - L1ME3A LINE L1 -331 5822 5598 479 252 0 26 chr3 153298698 153298813 -74225765 + MLT1J2 LTR MaLR 27 138 -312 645 270 76 17 chr3 153299112 153299401 -74225177 - L1ME3A LINE L1 -544 5603 5298 1264 201 89 0 chr3 153299411 153299680 -74224898 - L1MB4 LINE L1 -3 6177 5885 642 158 59 0 chr3 153299683 153299784 -74224794 - U6 snRNA snRNA 0 107 1 764 272 127 16 chr3 153299802 153300613 -74223965 - L1ME3A LINE L1 -844 5285 4357 972 188 62 10 chr3 153300613 153300821 -74223757 + L1PA16 LINE L1 5948 6166 0 1017 304 45 19 chr3 153300849 153301316 -74223262 - L1ME3A LINE L1 -1793 4336 3858 545 287 46 111 chr3 153301408 153301886 -74222692 - L1ME3A LINE L1 -2574 3555 3109 809 294 109 25 chr3 153301887 153302611 -74221967 - L1ME3A LINE L1 -3114 3015 2231 824 11 0 0 chr3 153302622 153302712 -74221866 - 5S rRNA rRNA -31 90 1 374 327 76 14 chr3 153302719 153302942 -74221636 - L1ME3A LINE L1 -4044 2266 2030 294 293 77 57 chr3 153303186 153303972 -74220606 - L1MEd LINE L1 -4653 1657 808 1048 329 82 22 chr3 153303992 153304615 -74219963 - L1MEd LINE L1 -5455 664 5 2177 116 3 0 chr3 153304716 153305091 -74219487 - AluSx SINE Alu 0 376 1 238 169 17 34 chr3 153305162 153305221 -74219357 + CT-rich Low_complexity Low_complexity 4 61 0 32 26 0 0 chr3 153305287 153305326 -74219252 + AT_rich Low_complexity Low_complexity 1 39 0 5242 170 31 29 chr3 153305659 153307134 -74217444 + L1MA9 LINE L1 4297 5767 -545 215 31 31 0 chr3 153307134 153307166 -74217412 + (CA)n Simple_repeat Simple_repeat 2 34 0 5242 170 31 29 chr3 153307166 153307286 -74217292 + L1MA9 LINE L1 5767 5885 -427 2239 90 0 0 chr3 153307286 153307586 -74216992 - AluSq SINE Alu -13 300 1 5242 170 31 29 chr3 153307586 153307724 -74216854 + L1MA9 LINE L1 5885 6052 -260 307 314 37 42 chr3 153308372 153308563 -74216015 - L1MEd LINE L1 -5017 1102 913 309 296 48 32 chr3 153309674 153309799 -74214779 + L2 LINE L2 3145 3271 -1 319 176 0 0 chr3 153310119 153310170 -74214408 - L1MC4 LINE L1 -1339 6703 6653 267 324 37 0 chr3 153310181 153310289 -74214289 + L3b LINE CR1 1354 1465 -118 2522 100 3 47 chr3 153311098 153311479 -74213099 - THE1B LTR MaLR 0 364 1 282 280 161 21 chr3 153311926 153312069 -74212509 + L2 LINE L2 3108 3270 -43 195 129 0 0 chr3 153312533 153312564 -74212014 + (TCCA)n Simple_repeat Simple_repeat 4 34 0 416 315 41 46 chr3 153313798 153313995 -74210583 - L2 LINE L2 0 3313 3118 218 182 15 0 chr3 153314530 153314596 -74209982 + (CA)n Simple_repeat Simple_repeat 1 67 0 23 33 0 0 chr3 153319476 153319506 -74205072 + AT_rich Low_complexity Low_complexity 1 30 0 386 279 120 32 chr3 153319621 153319779 -74204799 - MER5A DNA MER1_type -1 188 17 181 273 152 40 chr3 153319811 153319910 -74204668 + MER5A DNA MER1_type 58 167 -22 * 185 247 135 34 chr3 153319825 153319914 -74204664 - MER5B DNA MER1_type -64 114 17 939 191 16 46 chr3 153319952 153320146 -74204432 - MIR SINE MIR -67 195 8 1033 60 0 8 chr3 153321312 153321445 -74203133 + AluY SINE Alu 1 132 -179 469 106 0 0 chr3 153321458 153321524 -74203054 + Alu SINE Alu 238 303 -9 299 261 188 23 chr3 153322746 153322962 -74201616 - MIR SINE MIR -8 254 4 296 29 0 0 chr3 153323230 153323264 -74201314 + (T)n Simple_repeat Simple_repeat 1 34 0 2649 96 3 3 chr3 153323274 153323629 -74200949 - THE1A LTR MaLR 0 355 1 507 278 59 97 chr3 153324842 153325213 -74199365 + L2 LINE L2 2916 3272 0 1172 262 78 27 chr3 153325272 153325773 -74198805 + MLT1G1 LTR MaLR 10 593 -2 364 255 170 49 chr3 153325865 153326112 -74198466 - L2 LINE L2 0 3313 3037 340 274 97 8 chr3 153326166 153326290 -74198288 + L3 LINE CR1 1346 1480 -97 337 237 68 68 chr3 153326402 153326520 -74198058 - L2 LINE L2 -18 3254 3137 360 64 0 0 chr3 153326652 153326699 -74197879 + (TG)n Simple_repeat Simple_repeat 1 47 0 708 218 48 0 chr3 153326819 153326984 -74197594 - LTR33 LTR ERVL 0 521 349 609 281 94 34 chr3 153327015 153327282 -74197296 - LTR33 LTR ERVL -238 283 1 921 296 37 42 chr3 153327288 153327666 -74196912 - MLT1K LTR MaLR -193 395 20 187 253 100 100 chr3 153328464 153328614 -74195964 + L2 LINE L2 2624 2773 -541 291 306 32 75 chr3 153329001 153329187 -74195391 - MIR3 SINE MIR -7 201 24 306 0 0 0 chr3 153329436 153329470 -74195108 + (TG)n Simple_repeat Simple_repeat 2 35 0 777 163 0 123 chr3 153330350 153330402 -74194176 - MER106A DNA MER1_type 0 236 179 2093 101 30 0 chr3 153330402 153330698 -74193880 - AluSx SINE Alu -7 305 1 777 163 0 123 chr3 153330698 153330872 -74193706 - MER106A DNA MER1_type -57 179 38 3137 217 82 18 chr3 153331293 153332107 -74192471 - L1ME1 LINE L1 -5 6161 5296 283 224 0 15 chr3 153333164 153333231 -74191347 + L2 LINE L2 3206 3271 -1 346 282 24 0 chr3 153334024 153334109 -74190469 + MER5A DNA MER1_type 15 101 -88 536 284 33 58 chr3 153334209 153334571 -74190007 + L1MC4 LINE L1 7596 7948 -94 483 252 0 7 chr3 153334610 153334757 -74189821 + L1MC4 LINE L1 7897 8042 0 331 188 47 0 chr3 153334780 153334844 -74189734 - L1ME LINE L1 -517 5604 5538 2187 96 3 34 chr3 153335230 153335552 -74189026 - AluSx SINE Alu 0 312 1 417 268 127 13 chr3 153335580 153335737 -74188841 + MIR SINE MIR 34 208 -54 368 229 64 9 chr3 153336201 153336310 -74188268 + MER96B DNA MER1_type? 8 122 -295 333 204 76 65 chr3 153336706 153336845 -74187733 + MIR SINE MIR 32 185 -23 2700 133 46 50 chr3 153337539 153338042 -74186536 - L1PB1 LINE L1 -3 6148 5648 371 302 24 32 chr3 153338622 153338748 -74185830 + MIR SINE MIR 128 252 -10 398 264 36 0 chr3 153339087 153339197 -74185381 - MLT1J2 LTR MaLR -4 446 333 198 167 0 0 chr3 153339556 153339592 -74184986 + CT-rich Low_complexity Low_complexity 1 36 0 191 237 129 0 chr3 153339855 153339948 -74184630 + L2 LINE L2 2850 2954 -360 1883 199 47 62 chr3 153340002 153340530 -74184048 - MLT2B1 LTR ERVL 0 520 1 242 250 62 0 chr3 153342121 153342185 -74182393 + MIR SINE MIR 124 191 -71 285 286 39 0 chr3 153342682 153342759 -74181819 - MIR SINE MIR -70 192 113 216 0 0 0 chr3 153343284 153343308 -74181270 + (T)n Simple_repeat Simple_repeat 1 24 0 1305 243 111 104 chr3 153343654 153344242 -74180336 + MLT1F1 LTR MaLR 4 595 0 475 293 251 10 chr3 153344505 153344868 -74179710 - L3 LINE CR1 -732 845 327 2148 101 0 39 chr3 153345117 153345425 -74179153 + AluSg SINE Alu 1 296 -14 221 326 73 54 chr3 153345478 153345739 -74178839 - L3b LINE CR1 -186 1397 1132 243 235 0 0 chr3 153346297 153346348 -74178230 - MIR SINE MIR -109 153 103 810 280 171 14 chr3 153348106 153348520 -74176058 + MLT1K LTR MaLR 88 566 -22 185 204 0 45 chr3 153348636 153348680 -74175898 + L2 LINE L2 1168 1209 -2105 325 281 69 11 chr3 153349221 153349350 -74175228 - MIR SINE MIR -62 146 45 2380 74 21 18 chr3 153350375 153350711 -74173867 - L1PA8A LINE L1 0 6131 5795 405 300 62 8 chr3 153351956 153352086 -74172492 - L2 LINE L2 0 3272 3136 253 176 59 0 chr3 153352171 153352222 -74172356 - L2 LINE L2 -556 2758 2705 536 306 120 18 chr3 153352979 153353254 -74171324 - L2 LINE L2 -838 2476 2174 254 286 191 0 chr3 153354068 153354173 -74170405 - MIR SINE MIR -16 246 122 28 29 0 0 chr3 153354998 153355033 -74169545 + AT_rich Low_complexity Low_complexity 1 35 0 239 200 0 0 chr3 153355323 153355368 -74169210 + MLT1K LTR MaLR 168 212 -376 248 137 39 20 chr3 153355611 153355662 -74168916 + MLT1K LTR MaLR 512 563 -25 576 206 163 7 chr3 153355778 153355919 -74168659 - MIR SINE MIR -67 195 33 302 167 156 52 chr3 153356147 153356243 -74168335 + L2 LINE L2 3208 3313 0 930 238 78 0 chr3 153356504 153356735 -74167843 + MER5C DNA MER1_type 26 274 -50 1429 212 79 3 chr3 153356822 153357162 -74167416 + LTR37A LTR ERV1 7 372 -54 1737 168 0 7 chr3 153357176 153357487 -74167091 + AluSx SINE Alu 1 309 0 213 39 0 0 chr3 153357768 153357794 -74166784 + (GA)n Simple_repeat Simple_repeat 1 26 0 2906 228 73 4 chr3 153358371 153359059 -74165519 - L1MB7 LINE L1 -1 6183 5449 217 271 0 0 chr3 153359771 153359819 -74164759 + MIR SINE MIR 79 126 -136 565 301 12 6 chr3 153360056 153360222 -74164356 + MIR SINE MIR 80 246 -16 186 333 44 0 chr3 153360759 153360849 -74163729 - MIR SINE MIR -7 255 162 253 276 46 11 chr3 153360854 153360941 -74163637 + MIR SINE MIR 13 102 -160 234 239 120 22 chr3 153362319 153362411 -74162167 + MLT1L LTR MaLR 505 605 -10 854 312 77 30 chr3 153362948 153363387 -74161191 + MLT1K LTR MaLR 116 575 -13 448 195 153 17 chr3 153363483 153363601 -74160977 + MIR3 SINE MIR 72 205 -3 554 299 83 0 chr3 153364082 153364239 -74160339 + MIR SINE MIR 92 261 -1 534 274 43 41 chr3 153364948 153365173 -74159405 + MIR SINE MIR 1 228 -34 292 281 132 0 chr3 153366335 153366456 -74158122 - MIR3 SINE MIR -10 198 62 2397 128 20 43 chr3 153366666 153366907 -74157671 - MLT1B LTR MaLR 0 390 160 1831 146 0 7 chr3 153366907 153367209 -74157369 + AluJb SINE Alu 1 300 -12 2397 128 20 43 chr3 153367209 153367366 -74157212 - MLT1B LTR MaLR -230 160 1 266 318 31 39 chr3 153367618 153367747 -74156831 + MIR SINE MIR 79 206 -56 29 60 0 0 chr3 153367754 153367804 -74156774 + AT_rich Low_complexity Low_complexity 1 50 0 812 237 64 19 chr3 153368143 153368391 -74156187 + MIR SINE MIR 3 261 -1 227 266 143 112 chr3 153368403 153368851 -74155727 - L2 LINE L2 -7 3265 2804 186 103 0 0 chr3 153369291 153369320 -74155258 + (CCCTAA)n Simple_repeat Simple_repeat 4 32 0 1978 83 0 80 chr3 153369669 153369982 -74154596 - AluSg SINE Alu -22 288 1 593 289 19 28 chr3 153370101 153370312 -74154266 - MLT1K LTR MaLR -15 573 365 2595 184 43 18 chr3 153370324 153370878 -74153700 - L1MB7 LINE L1 0 6184 5617 6283 205 41 8 chr3 153370880 153372749 -74151829 - L1M4 LINE L1 -513 5665 3734 350 292 25 17 chr3 153372828 153372948 -74151630 - MLT1K LTR MaLR -309 279 159 203 301 177 50 chr3 153373179 153373597 -74150981 - L2 LINE L2 -1916 1398 928 303 338 192 10 chr3 153373939 153374137 -74150441 - L2 LINE L2 -503 2811 2578 564 229 25 38 chr3 153374580 153374737 -74149841 - MIR SINE MIR -1 261 107 2036 154 14 8 chr3 153375429 153375793 -74148785 - L1PA16 LINE L1 0 6166 5801 245 324 85 12 chr3 153375956 153376215 -74148363 - L1ME3A LINE L1 -209 5961 5684 260 276 134 8 chr3 153376222 153376349 -74148229 - L1ME3A LINE L1 -544 5626 5484 21 36 0 0 chr3 153376599 153376627 -74147951 + AT_rich Low_complexity Low_complexity 1 28 0 1955 168 48 8 chr3 153376745 153377096 -74147482 - MLT1A1 LTR MaLR 0 365 1 1570 170 6 39 chr3 153377608 153377920 -74146658 + AluJb SINE Alu 1 302 -10 523 291 121 10 chr3 153379976 153380182 -74144396 + MIR SINE MIR 22 250 -12 484 212 76 8 chr3 153380548 153380680 -74143898 + MER5A DNA MER1_type 49 189 0 230 104 0 21 chr3 153380873 153380921 -74143657 + (TC)n Simple_repeat Simple_repeat 2 48 0 350 285 8 5 chr3 153380924 153381234 -74143344 + CT-rich Low_complexity Low_complexity 1 363 -20 459 0 0 0 chr3 153381234 153381285 -74143293 + (TG)n Simple_repeat Simple_repeat 2 52 0 350 285 8 5 chr3 153381285 153381307 -74143271 + CT-rich Low_complexity Low_complexity 363 383 0 217 400 22 0 chr3 153382136 153382226 -74142352 - MIR SINE MIR -63 145 54 246 32 0 0 chr3 153382236 153382267 -74142311 + (CA)n Simple_repeat Simple_repeat 2 32 0 380 264 132 8 chr3 153384324 153384453 -74140125 + MIR SINE MIR 108 252 -10 1928 202 0 29 chr3 153384473 153384638 -74139940 - MLT1A1 LTR MaLR 0 365 197 2035 135 3 0 chr3 153384638 153384942 -74139636 - AluSx SINE Alu -7 305 1 1928 202 0 29 chr3 153384942 153385152 -74139426 - MLT1A1 LTR MaLR -168 197 1 295 185 22 0 chr3 153385152 153385244 -74139334 + CT-rich Low_complexity Low_complexity 1 94 0 187 29 0 59 chr3 153385675 153385709 -74138869 + (TGGA)n Simple_repeat Simple_repeat 2 33 0 264 328 78 35 chr3 153386246 153386362 -74138216 + L2 LINE L2 3139 3259 -13 430 234 27 18 chr3 153386444 153386555 -74138023 + MIR SINE MIR 48 159 -103 205 310 30 30 chr3 153387446 153387546 -74137032 + MIR SINE MIR 107 206 -56 255 290 0 75 chr3 153388371 153388478 -74136100 - L2 LINE L2 -14 3258 3160 883 260 59 97 chr3 153388604 153388742 -74135836 + L1ME4a LINE L1 5316 5458 -663 2235 96 0 3 chr3 153388742 153389054 -74135524 + AluY SINE Alu 1 311 0 883 260 59 97 chr3 153389054 153389556 -74135022 + L1ME4a LINE L1 5458 5910 -211 2603 108 11 0 chr3 153389556 153389907 -74134671 + THE1A LTR MaLR 1 355 0 883 260 59 97 chr3 153389907 153390091 -74134487 + L1ME4a LINE L1 5910 6099 -22 366 257 72 44 chr3 153391872 153392024 -74132554 + MIR3 SINE MIR 14 146 -62 348 221 234 39 chr3 153392381 153392535 -74132043 - MIR SINE MIR -48 214 31 198 280 136 64 chr3 153392765 153392890 -74131688 - L2 LINE L2 -256 3016 2883 1011 188 22 0 chr3 153394192 153394373 -74130205 + MER20 DNA MER1_type 35 219 0 201 147 0 0 chr3 153394841 153394875 -74129703 + (TG)n Simple_repeat Simple_repeat 2 35 0 395 297 205 0 chr3 153395243 153395428 -74129150 - MIR SINE MIR 0 262 40 414 273 76 16 chr3 153395926 153396133 -74128445 + L1M4 LINE L1 58 522 -6333 2318 254 38 62 chr3 153396405 153397803 -74126775 + L1M4 LINE L1 1033 2401 -4558 341 234 63 36 chr3 153397804 153397915 -74126663 + L1M4 LINE L1 2573 2686 -4452 292 317 54 36 chr3 153397915 153398082 -74126496 - L2 LINE L2 -213 3059 2890 2170 156 14 14 chr3 153398403 153398768 -74125810 - MLT1A1 LTR MaLR 0 365 1 214 224 200 24 chr3 153398994 153399079 -74125499 - MIR SINE MIR -110 152 53 415 266 98 28 chr3 153401600 153401743 -74122835 + MIR SINE MIR 107 259 -3 277 296 65 41 chr3 153402064 153402233 -74122345 + L3b LINE CR1 1215 1387 -196 387 337 11 51 chr3 153402320 153402498 -74122080 + MIR3 SINE MIR 5 175 -33 468 249 149 25 chr3 153405116 153405317 -74119261 + MIR SINE MIR 26 251 -11 237 287 0 21 chr3 153406283 153406377 -74118201 + MER113 DNA MER1_type? 1 92 -429 470 163 116 62 chr3 153406490 153406619 -74117959 + MER113 DNA MER1_type? 278 413 -108 277 324 36 9 chr3 153406710 153406821 -74117757 - MIR SINE MIR -60 148 35 1566 164 45 3 chr3 153406936 153407057 -74117521 + AluJb SINE Alu 1 115 -197 186 71 0 0 chr3 153407057 153407085 -74117493 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 1566 164 45 3 chr3 153407085 153407249 -74117329 + AluJb SINE Alu 115 298 -14 1170 79 11 6 chr3 153410255 153410432 -74114146 + (TTTC)n Simple_repeat Simple_repeat 2 179 0 1895 117 0 0 chr3 153410446 153410711 -74113867 - AluY SINE Alu -46 265 1 242 345 112 0 chr3 153410965 153411081 -74113497 + L3 LINE CR1 1388 1516 -61 338 295 109 43 chr3 153411457 153411667 -74112911 - MIR SINE MIR -18 244 21 191 141 188 47 chr3 153412459 153412523 -74112055 - L2 LINE L2 -2 3270 3198 794 240 62 27 chr3 153412656 153412963 -74111615 + L1MEc LINE L1 1308 1547 -4995 630 232 135 11 chr3 153413876 153414061 -74110517 - MIR SINE MIR -7 255 48 589 235 49 64 chr3 153414240 153414444 -74110134 - MIR SINE MIR -2 260 60 966 262 138 33 chr3 153414609 153415093 -74109485 - MLT1H LTR MaLR -12 537 3 443 286 77 22 chr3 153416965 153417147 -74107431 + MIR SINE MIR 21 212 -50 314 94 0 38 chr3 153418746 153418799 -74105779 + MER5A DNA MER1_type 1 51 -138 1013 172 44 0 chr3 153418823 153419003 -74105575 - MER5A DNA MER1_type 0 189 2 207 352 8 24 chr3 153421041 153421166 -74103412 + C-rich Low_complexity Low_complexity 4 126 0 210 128 0 0 chr3 153422331 153422370 -74102208 + (TG)n Simple_repeat Simple_repeat 1 39 0 337 289 39 62 chr3 153422497 153422684 -74101894 + MIR3 SINE MIR 2 199 -9 252 306 19 31 chr3 153422693 153422853 -74101725 + GA-rich Low_complexity Low_complexity 1 158 0 232 385 6 12 chr3 153423131 153423292 -74101286 + CT-rich Low_complexity Low_complexity 4 163 0 601 189 16 94 chr3 153423459 153423650 -74100928 - MER112 DNA MER1_type -5 255 80 279 130 0 0 chr3 153423666 153423720 -74100858 + (CA)n Simple_repeat Simple_repeat 2 55 0 421 150 0 0 chr3 153425348 153425408 -74099170 - AluS SINE Alu -250 61 2 192 77 0 0 chr3 153426264 153426290 -74098288 + (T)n Simple_repeat Simple_repeat 1 26 0 1157 81 0 58 chr3 153426888 153427062 -74097516 - L1PA10 LINE L1 0 6168 6005 463 64 0 51 chr3 153427940 153428018 -74096560 - AluY SINE Alu -200 111 38 25 31 0 0 chr3 153428020 153428052 -74096526 + AT_rich Low_complexity Low_complexity 1 32 0 307 257 7 105 chr3 153428108 153428260 -74096318 - L1ME3 LINE L1 -76 6086 5950 659 281 44 54 chr3 153428313 153428701 -74095877 - L1ME3 LINE L1 -230 5940 5557 301 333 54 34 chr3 153428704 153428851 -74095727 - L1ME3 LINE L1 -1481 4665 4516 316 330 115 32 chr3 153428864 153429192 -74095386 - L1ME3 LINE L1 -1712 4434 4135 1829 153 0 14 chr3 153429192 153429486 -74095092 - AluJb SINE Alu -22 290 1 316 330 115 32 chr3 153429486 153429835 -74094743 - L1ME3 LINE L1 -2011 4135 3701 184 304 0 0 chr3 153431401 153431447 -74093131 + L2 LINE L2 2728 2773 -541 354 323 39 72 chr3 153431476 153431978 -74092600 + L2 LINE L2 2764 3244 -28 389 230 150 0 chr3 153434391 153434504 -74090074 + MIR SINE MIR 124 253 -9 409 328 67 15 chr3 153437402 153437597 -74086981 + L2 LINE L2 2877 3081 -191 1017 140 6 22 chr3 153437692 153437870 -74086708 - FRAM SINE Alu 0 176 2 215 294 140 22 chr3 153438052 153438188 -74086390 + MIR SINE MIR 19 170 -92 22 0 0 0 chr3 153438357 153438379 -74086199 + AT_rich Low_complexity Low_complexity 1 22 0 338 299 22 0 chr3 153438689 153438826 -74085752 + (TG)n Simple_repeat Simple_repeat 2 141 0 200 318 125 0 chr3 153438876 153438964 -74085614 - L2 LINE L2 -33 3239 3141 28 48 0 0 chr3 153439086 153439128 -74085450 + AT_rich Low_complexity Low_complexity 1 42 0 486 216 60 9 chr3 153439624 153439740 -74084838 - L2 LINE L2 -6 3307 3186 304 319 74 62 chr3 153439989 153440421 -74084157 + L2 LINE L2 2824 3260 -12 1013 284 88 2 chr3 153440994 153441402 -74083176 - MER113 DNA MER1_type? -64 457 15 652 147 4 186 chr3 153441661 153441892 -74082686 + MER53 DNA DNA 1 189 0 31 26 0 0 chr3 153443440 153443478 -74081100 + AT_rich Low_complexity Low_complexity 1 38 0 929 180 33 82 chr3 153443504 153443810 -74080768 + L1MC4 LINE L1 7685 7975 -67 1374 130 37 0 chr3 153443811 153444027 -74080551 - MLT1C LTR MaLR 0 467 244 2049 90 45 0 chr3 153444154 153444442 -74080136 - AluSc SINE Alu -8 301 1 381 22 0 0 chr3 153444778 153444824 -74079754 + (TG)n Simple_repeat Simple_repeat 2 47 0 252 252 179 32 chr3 153446161 153446284 -74078294 + MIR3 SINE MIR 31 171 -37 441 0 0 0 chr3 153446775 153446824 -74077754 + (ATG)n Simple_repeat Simple_repeat 1 49 0 486 202 0 0 chr3 153447915 153448004 -74076574 - MER33 DNA MER1_type -225 99 11 683 312 34 25 chr3 153448547 153448784 -74075794 + MIR SINE MIR 8 246 -16 225 221 63 47 chr3 153449622 153449749 -74074829 + L1ME4a LINE L1 5991 6119 -2 266 232 0 0 chr3 153450366 153450422 -74074156 - L2 LINE L2 0 3313 3258 357 310 139 48 chr3 153450900 153451216 -74073362 + L2 LINE L2 2212 2556 -758 448 152 13 0 chr3 153453665 153453744 -74070834 + MER116 DNA Mariner 1 80 0 515 221 33 113 chr3 153453780 153454020 -74070558 - L1MC4a LINE L1 -1877 5931 5711 311 336 8 15 chr3 153454126 153454260 -74070318 + L1MEc LINE L1 1448 1580 -4816 2103 128 0 0 chr3 153454260 153454542 -74070036 + AluSx SINE Alu 1 282 -30 306 296 37 19 chr3 153454572 153454734 -74069844 + L1M4 LINE L1 4672 4836 -1310 200 265 73 88 chr3 153454970 153455298 -74069280 + L2 LINE L2 2570 2892 -422 368 303 46 0 chr3 153455347 153455456 -74069122 + L2 LINE L2 3200 3313 0 2320 97 3 0 chr3 153455510 153455809 -74068769 - AluSc SINE Alu -9 300 1 338 16 0 0 chr3 153457494 153457540 -74067038 + AluY SINE Alu 2 41 -259 241 284 22 75 chr3 153457643 153457777 -74066801 + MIR SINE MIR 136 262 0 186 133 0 0 chr3 153457804 153457834 -74066744 + (TG)n Simple_repeat Simple_repeat 2 31 0 27 62 0 0 chr3 153457986 153458034 -74066544 + AT_rich Low_complexity Low_complexity 1 48 0 749 338 82 52 chr3 153458661 153459565 -74065013 - L2 LINE L2 0 3272 2299 18846 32 0 0 chr3 153460050 153462282 -74062296 - L1P LINE L1 -794 5352 3120 1362 255 68 80 chr3 153462640 153463240 -74061338 + MLT1G1 LTR MaLR 3 595 0 2635 267 55 30 chr3 153463868 153464977 -74059601 + L2 LINE L2 2151 3277 -36 349 136 45 0 chr3 153465220 153465286 -74059292 - AluJ/FLAM SINE Alu -233 69 1 342 93 0 37 chr3 153465286 153465340 -74059238 - MER65B LTR ERV1 -479 52 1 383 227 71 92 chr3 153465351 153465459 -74059119 + MIR3 SINE MIR 70 176 -32 923 171 0 75 chr3 153465459 153465646 -74058932 - MER5B DNA MER1_type -4 174 2 383 227 71 92 chr3 153465646 153465678 -74058900 + MIR3 SINE MIR 176 207 -1 921 231 29 19 chr3 153466349 153466557 -74058021 + MER63A DNA MER1_type 1 210 0 385 326 47 17 chr3 153466755 153466927 -74057651 + MIR SINE MIR 29 205 -57 759 190 29 107 chr3 153466928 153467133 -74057445 - MER5A DNA MER1_type 0 189 1 2110 131 0 0 chr3 153467951 153468248 -74056330 + AluSx SINE Alu 1 297 -15 445 283 94 13 chr3 153468268 153468427 -74056151 + MIR SINE MIR 29 200 -62 715 261 111 39 chr3 153468427 153468839 -74055739 - MLT1J LTR MaLR 0 446 23 377 319 34 0 chr3 153469716 153469835 -74054743 - L2 LINE L2 0 3272 3150 896 137 0 0 chr3 153469906 153470030 -74054548 + FLAM_C SINE Alu 1 124 -19 728 188 8 0 chr3 153470046 153470174 -74054404 - MER5B DNA MER1_type -48 130 2 369 323 47 8 chr3 153471161 153471288 -74053290 + MIR3 SINE MIR 37 168 -40 877 168 93 0 chr3 153472557 153472718 -74051860 - MER5A DNA MER1_type 0 189 14 28 0 0 0 chr3 153472773 153472801 -74051777 + AT_rich Low_complexity Low_complexity 1 28 0 2201 116 0 3 chr3 153472804 153473107 -74051471 - AluSx SINE Alu -10 302 1 498 298 22 28 chr3 153475418 153475599 -74048979 + LTR16C LTR ERVL 312 491 0 522 220 82 56 chr3 153476014 153476310 -74048268 + L1M2 LINE L1 5159 5427 -735 182 343 67 9 chr3 153476762 153476867 -74047711 - L2 LINE L2 -1 3271 3161 335 299 23 34 chr3 153477256 153477433 -74047145 + AluSx SINE Alu 1 175 -127 6368 139 31 13 chr3 153478065 153479140 -74045438 + LTR49-int LTR ERV1 4586 5679 -652 2315 135 121 81 chr3 153479402 153479899 -74044679 + LTR44 LTR ERV1 3 519 0 246 263 32 63 chr3 153480068 153480163 -74044415 - MIR3 SINE MIR -102 106 15 312 27 0 0 chr3 153480244 153480281 -74044297 + (CA)n Simple_repeat Simple_repeat 1 37 0 325 311 175 36 chr3 153480284 153480724 -74043854 - MLT1K LTR MaLR -73 515 15 349 333 42 21 chr3 153481377 153481521 -74043057 - MIR3 SINE MIR -47 161 15 22 0 0 0 chr3 153482526 153482548 -74042030 + AT_rich Low_complexity Low_complexity 1 22 0 6638 217 31 6 chr3 153484100 153485673 -74038905 - L1 LINE L1 -2009 4137 2526 180 238 0 0 chr3 153486319 153486361 -74038217 + L3 LINE CR1 1534 1575 -2 2473 49 0 26 chr3 153486582 153486889 -74037689 + AluY SINE Alu 1 299 -12 290 357 66 61 chr3 153487073 153487269 -74037309 + L1MC/D LINE L1 5581 5777 -2031 22 0 0 0 chr3 153487516 153487538 -74037040 + AT_rich Low_complexity Low_complexity 1 22 0 1396 177 0 9 chr3 153488326 153488552 -74036026 - AluJo SINE Alu -88 224 1 23 68 0 0 chr3 153488557 153488601 -74035977 + AT_rich Low_complexity Low_complexity 1 44 0 1592 83 0 0 chr3 153488906 153489098 -74035480 + AluY SINE Alu 1 192 -119 2369 95 0 0 chr3 153489221 153489517 -74035061 - AluY SINE Alu -15 296 1 633 237 38 0 chr3 153489517 153489648 -74034930 + MER58B DNA MER1_type 205 340 -1 261 152 0 0 chr3 153490393 153490439 -74034139 + Alu SINE Alu 256 301 -1 27 96 0 0 chr3 153490588 153490671 -74033907 + AT_rich Low_complexity Low_complexity 1 83 0 505 352 60 48 chr3 153491372 153491826 -74032752 - L1MEd LINE L1 -5314 805 347 4296 87 4 2 chr3 153492386 153492940 -74031638 + L1PB1 LINE L1 5597 6151 0 262 273 0 15 chr3 153493529 153493595 -74030983 + MIR SINE MIR 21 85 -177 2284 127 38 3 chr3 153493611 153493958 -74030620 - MER46B DNA MER2_type -1 235 2 796 271 77 5 chr3 153493962 153494169 -74030409 + MER58A DNA MER1_type 3 224 0 805 163 52 6 chr3 153495495 153495672 -74028906 - MIR SINE MIR -30 232 53 2473 87 0 0 chr3 153495680 153495990 -74028588 + AluY SINE Alu 1 310 -1 4377 118 38 26 chr3 153496252 153497050 -74027528 - L1P3 LINE L1 -4653 1808 1006 255 323 0 37 chr3 153497071 153497232 -74027346 + C-rich Low_complexity Low_complexity 4 158 0 192 200 0 0 chr3 153497267 153497317 -74027261 + C-rich Low_complexity Low_complexity 1 50 0 898 57 50 14 chr3 153497555 153497696 -74026882 - L1PA8 LINE L1 -129 6043 5898 235 315 141 47 chr3 153498117 153498266 -74026312 - MIR SINE MIR -15 247 85 977 274 24 4 chr3 153498266 153498518 -74026060 - LTR16A LTR ERVL 0 450 194 213 320 93 21 chr3 153498971 153499068 -74025510 + MIR SINE MIR 51 154 -108 681 300 33 14 chr3 153499085 153499295 -74025283 - MIR SINE MIR -17 245 32 22 35 0 0 chr3 153499361 153499390 -74025188 + AT_rich Low_complexity Low_complexity 1 29 0 1915 185 0 3 chr3 153499580 153499893 -74024685 - AluJb SINE Alu 0 312 1 553 260 41 47 chr3 153500705 153500874 -74023704 + MLT1J LTR MaLR 213 380 -131 192 355 45 9 chr3 153501240 153501350 -74023228 - L3b LINE CR1 -286 1297 1184 287 300 0 22 chr3 153501398 153501488 -74023090 - MER20B DNA MER1_type -619 164 77 261 0 0 0 chr3 153502032 153502061 -74022517 + (G)n Simple_repeat Simple_repeat 1 29 0 1926 134 49 0 chr3 153502111 153502439 -74022139 - MLT2A1 LTR ERVL -100 344 1 1587 138 31 4 chr3 153502439 153502697 -74021881 + MER65A LTR ERV1 181 445 0 235 234 57 65 chr3 153502920 153503044 -74021534 + L2 LINE L2 3116 3238 -75 279 224 0 30 chr3 153503049 153503116 -74021462 - L2 LINE L2 0 3313 3249 254 186 0 0 chr3 153503112 153503155 -74021423 + L2 LINE L2 3215 3257 -15 * 579 159 303 0 chr3 153503226 153503371 -74021207 + MER5A DNA MER1_type 1 189 0 706 257 65 16 chr3 153503938 153504183 -74020395 + MIR SINE MIR 6 262 0 418 304 97 1 chr3 153504457 153504712 -74019866 + MLT1I LTR MaLR 56 360 -49 24 32 0 0 chr3 153504948 153504979 -74019599 + AT_rich Low_complexity Low_complexity 1 31 0 1162 85 5 79 chr3 153506918 153507107 -74017471 - L1PB1 LINE L1 -1 6150 5976 418 235 16 112 chr3 153507509 153507697 -74016881 + MIR SINE MIR 36 200 -62 225 0 0 0 chr3 153508349 153508374 -74016204 + (A)n Simple_repeat Simple_repeat 1 25 0 22 35 0 0 chr3 153508800 153508829 -74015749 + AT_rich Low_complexity Low_complexity 1 29 0 1013 216 213 28 chr3 153509820 153510181 -74014397 - LTR50 LTR ERVL -343 452 25 395 235 0 12 chr3 153510189 153510274 -74014304 + MIR SINE MIR 40 123 -139 1397 66 30 15 chr3 153511194 153511391 -74013187 + L1MA1 LINE L1 6103 6302 0 3125 191 45 21 chr3 153511407 153512160 -74012418 + L1MB8 LINE L1 5387 6157 -21 8102 66 1 3 chr3 153512354 153513410 -74011168 + L1P LINE L1 2033 3086 -3060 1125 175 0 46 chr3 153514135 153514352 -74010226 + AluJo SINE Alu 86 292 -20 1075 259 35 12 chr3 153514467 153514810 -74009768 + L2 LINE L2 2464 2814 -500 1532 127 45 0 chr3 153514982 153515226 -74009352 + L1MA8 LINE L1 6034 6288 -3 322 207 49 12 chr3 153515634 153515716 -74008862 - MIR SINE MIR -87 175 91 557 224 12 68 chr3 153516203 153516364 -74008214 - AluSc SINE Alu -3 306 155 1206 218 91 57 chr3 153516526 153516911 -74007667 + MLT1J2 LTR MaLR 27 424 -26 387 343 14 14 chr3 153517339 153517546 -74007032 - L2 LINE L2 -218 3054 2848 703 225 55 33 chr3 153519520 153519702 -74004876 - MER3 DNA MER1_type -10 199 14 249 0 0 0 chr3 153520154 153520188 -74004390 + L1PA3 LINE L1 5974 6007 -148 225 154 0 0 chr3 153520197 153520236 -74004342 + C-rich Low_complexity Low_complexity 5 43 0 285 375 0 7 chr3 153520277 153520535 -74004043 + C-rich Low_complexity Low_complexity 1 256 0 2370 87 0 0 chr3 153520857 153521156 -74003422 - AluY SINE Alu -12 299 1 453 291 93 65 chr3 153521213 153521612 -74002966 - L1MEd LINE L1 -5669 450 41 323 185 31 0 chr3 153522109 153522174 -74002404 - Alu SINE Alu -1 301 235 425 118 127 0 chr3 153522176 153522286 -74002292 + L1MB1 LINE L1 6038 6161 -7 563 164 30 103 chr3 153522810 153522975 -74001603 - L1M4 LINE L1 -1323 4823 4671 271 290 65 29 chr3 153523090 153523228 -74001350 - MLT1L LTR MaLR -7 608 466 2177 195 15 10 chr3 153523283 153523705 -74000873 + MSTB LTR MaLR 1 375 0 25 0 0 0 chr3 153524959 153524984 -73999594 + AT_rich Low_complexity Low_complexity 1 25 0 7660 52 132 7 chr3 153525630 153526688 -73997890 - L1P LINE L1 -4318 1828 638 848 213 0 33 chr3 153526912 153527095 -73997483 - MER5B DNA MER1_type 0 178 2 410 268 183 7 chr3 153527105 153527258 -73997320 - MER5A DNA MER1_type -1 188 9 2320 71 3 7 chr3 153527490 153527785 -73996793 + AluSg SINE Alu 1 294 -16 411 168 59 20 chr3 153527861 153527962 -73996616 - MLT1H1 LTR MaLR -25 530 426 1021 240 37 43 chr3 153529618 153529918 -73994660 + L2 LINE L2 2241 2538 -776 5904 20 0 0 chr3 153529973 153530635 -73993943 - L1PA2 LINE L1 -2 6153 5492 21 0 0 0 chr3 153531283 153531304 -73993274 + AT_rich Low_complexity Low_complexity 1 21 0 316 158 83 51 chr3 153531979 153532088 -73992490 - L1M LINE L1 -817 5367 5263 303 340 24 12 chr3 153532170 153532340 -73992238 - MIR3 SINE MIR -6 202 28 205 227 30 45 chr3 153532519 153532585 -73991993 + MER5B DNA MER1_type 3 67 -111 1093 178 11 5 chr3 153532764 153532949 -73991629 - MER5A DNA MER1_type -3 186 1 724 240 38 64 chr3 153533186 153533229 -73991349 + MLT1A2 LTR MaLR 83 126 -248 2129 71 18 0 chr3 153533229 153533509 -73991069 + AluY SINE Alu 5 289 -22 724 240 38 64 chr3 153533509 153533732 -73990846 + MLT1A2 LTR MaLR 126 342 -32 207 0 0 0 chr3 153533732 153533755 -73990823 + (TG)n Simple_repeat Simple_repeat 1 23 0 334 102 0 0 chr3 153533799 153533848 -73990730 + (C)n Simple_repeat Simple_repeat 1 49 0 249 300 27 86 chr3 153534609 153534683 -73989895 - L2 LINE L2 -742 2572 2495 2104 107 0 0 chr3 153534683 153534954 -73989624 + AluSx SINE Alu 22 292 -20 249 300 27 86 chr3 153534954 153535136 -73989442 - L2 LINE L2 -819 2495 2331 1442 153 4 20 chr3 153536747 153536995 -73987583 + AluJo SINE Alu 65 308 -4 310 267 228 0 chr3 153536995 153537096 -73987482 + MER5A DNA MER1_type 66 189 0 896 196 165 16 chr3 153537176 153537431 -73987147 - L1MD3 LINE L1 -10 7985 7693 547 203 175 0 chr3 153537438 153537581 -73986997 + MER3 DNA MER1_type 1 168 -41 668 74 11 0 chr3 153537796 153537891 -73986687 + (TAGA)n Simple_repeat Simple_repeat 3 98 0 1271 239 14 27 chr3 153537891 153538184 -73986394 - MLT2B2 LTR ERVL -56 459 171 1207 196 5 119 chr3 153538230 153538457 -73986121 + L1MB1 LINE L1 5642 5809 -359 2149 129 7 3 chr3 153538457 153538766 -73985812 + AluSx SINE Alu 2 311 -1 1207 196 5 119 chr3 153538766 153538925 -73985653 + L1MB1 LINE L1 5809 5984 -184 1240 210 37 62 chr3 153539084 153539489 -73985089 - L1MC5 LINE L1 -262 7699 7305 280 320 40 20 chr3 153539764 153539914 -73984664 + MIR SINE MIR 109 261 -1 397 332 47 24 chr3 153539948 153540328 -73984250 - L2 LINE L2 -528 2786 2398 443 172 35 48 chr3 153540359 153540504 -73984074 - Charlie7 DNA MER1_type -52 2560 2418 * 1596 240 75 36 chr3 153540498 153541115 -73983463 - Charlie7 DNA MER1_type -1891 721 81 29 0 0 0 chr3 153544255 153544284 -73980294 + AT_rich Low_complexity Low_complexity 1 29 0 403 138 0 0 chr3 153544574 153544632 -73979946 + MER58B DNA MER1_type 243 300 -41 520 336 34 4 chr3 153544994 153545229 -73979349 - MIR SINE MIR 0 262 21 322 269 11 21 chr3 153546622 153546715 -73977863 + GA-rich Low_complexity Low_complexity 4 95 0 295 358 141 18 chr3 153546871 153547430 -73977148 + L3 LINE CR1 940 1567 -10 453 368 16 13 chr3 153552218 153552478 -73972100 - MIR SINE MIR 0 262 2 839 237 31 9 chr3 153552576 153552800 -73971778 - LTR33 LTR ERVL -1 520 292 281 222 0 0 chr3 153552890 153552953 -73971625 - LTR33 LTR ERVL -445 76 14 1268 216 32 18 chr3 153553096 153553434 -73971144 + MLT1C LTR MaLR 1 343 -124 4750 109 72 97 chr3 153553452 153554871 -73969707 - pTR5 LTR ERV1 0 2438 741 389 198 156 10 chr3 153554873 153554969 -73969609 + MLT1C LTR MaLR 358 467 0 272 316 28 46 chr3 153556694 153556912 -73967666 - L1MC/D LINE L1 -2065 5743 5530 267 133 0 0 chr3 153557786 153557831 -73966747 + (TG)n Simple_repeat Simple_repeat 1 45 0 211 281 53 61 chr3 153558057 153558171 -73966407 + L2 LINE L2 3197 3309 -4 767 144 16 16 chr3 153558867 153558992 -73965586 - FLAM_A SINE Alu -8 125 1 220 146 0 42 chr3 153559806 153559854 -73964724 + (GGGAGA)n Simple_repeat Simple_repeat 2 47 0 1543 196 58 6 chr3 153562009 153562572 -73962006 + L1ME1 LINE L1 4917 5529 -637 1209 226 44 58 chr3 153562582 153563011 -73961567 + L1ME1 LINE L1 5713 6135 -31 282 335 112 19 chr3 153563508 153563669 -73960909 + MIR3 SINE MIR 20 195 -13 208 319 231 20 chr3 153565920 153566171 -73958407 + L2 LINE L2 2175 2478 -836 192 352 47 23 chr3 153566307 153566435 -73958143 + L2 LINE L2 3104 3234 -38 548 325 159 7 chr3 153566449 153567016 -73957562 - L2 LINE L2 -861 2453 1801 267 282 117 108 chr3 153568648 153568964 -73955614 + L2 LINE L2 2954 3272 0 249 300 53 40 chr3 153569483 153569633 -73954945 - MARNA DNA Mariner -169 417 266 239 292 0 0 chr3 153569647 153569712 -73954866 + (TATG)n Simple_repeat Simple_repeat 1 65 0 308 290 21 43 chr3 153569712 153569805 -73954773 - L1MC4 LINE L1 -1338 6704 6614 328 327 19 9 chr3 153569809 153569916 -73954662 - L1MC4 LINE L1 -1340 6702 6595 321 226 0 0 chr3 153569918 153570002 -73954576 + (TG)n Simple_repeat Simple_repeat 1 84 0 279 339 9 0 chr3 153570049 153570158 -73954420 + MARNA DNA Mariner 421 530 -56 360 330 61 28 chr3 153570436 153570648 -73953930 + MIR SINE MIR 13 231 -31 258 222 103 17 chr3 153570943 153571060 -73953518 - MLT1K LTR MaLR -1 587 461 457 290 72 0 chr3 153571564 153571702 -73952876 - MIR SINE MIR -114 148 1 195 42 0 0 chr3 153572655 153572679 -73951899 + (GA)n Simple_repeat Simple_repeat 1 24 0 204 310 76 69 chr3 153572820 153572965 -73951613 - L3b LINE CR1 -18 1565 1420 244 340 135 14 chr3 153573792 153574007 -73950571 - MIR SINE MIR -2 260 20 207 225 126 63 chr3 153574356 153574467 -73950111 - L2 LINE L2 -2826 488 371 338 378 117 14 chr3 153574629 153575055 -73949523 + L3 LINE CR1 663 1132 -445 186 167 0 0 chr3 153575857 153575893 -73948685 + T-rich Low_complexity Low_complexity 1 36 0 602 230 7 39 chr3 153576683 153576837 -73947741 - MIR SINE MIR -47 215 67 421 295 140 39 chr3 153578214 153578421 -73946157 - MIR SINE MIR -2 260 33 * 1062 303 107 30 chr3 153578403 153578862 -73945716 + L2 LINE L2 2818 3311 -2 428 259 40 40 chr3 153579130 153579304 -73945274 + MARNA DNA Mariner 149 322 -264 585 263 34 34 chr3 153579349 153579558 -73945020 + MARNA DNA Mariner 149 357 -229 453 19 0 0 chr3 153579690 153579744 -73944834 + (CA)n Simple_repeat Simple_repeat 1 54 0 291 250 154 44 chr3 153580542 153580678 -73943900 - L2 LINE L2 -1005 2309 2159 216 320 0 60 chr3 153580780 153580880 -73943698 - L2 LINE L2 -78 3235 3142 231 337 12 0 chr3 153581025 153581108 -73943470 + MIR SINE MIR 56 139 -123 1571 188 28 55 chr3 153581879 153582316 -73942262 - L1MB8 LINE L1 -2 6176 5752 948 260 108 22 chr3 153582669 153583142 -73941436 - L1MB8 LINE L1 -743 5403 5197 519 317 92 43 chr3 153583184 153583465 -73941113 - L1MB8 LINE L1 -982 5164 4870 382 310 30 18 chr3 153583468 153583649 -73940929 - L1MC/D LINE L1 -539 5582 5422 297 324 157 57 chr3 153584073 153584499 -73940079 + L2 LINE L2 2580 3102 -211 2471 161 52 0 chr3 153584499 153584904 -73939674 + MSTB LTR MaLR 1 426 0 297 324 157 57 chr3 153584904 153585140 -73939438 + L2 LINE L2 3102 3313 0 330 170 14 48 chr3 153585527 153585625 -73938953 - MIR SINE MIR -11 197 104 1678 179 17 13 chr3 153585737 153586038 -73938540 - AluJo SINE Alu -10 302 1 191 339 36 36 chr3 153586845 153587010 -73937568 - L2 LINE L2 -270 3002 2838 263 263 149 44 chr3 153588006 153588120 -73936458 + MIR SINE MIR 78 203 -59 2394 132 92 8 chr3 153588358 153588751 -73935827 - MSTB LTR MaLR 0 426 1 202 336 98 0 chr3 153589030 153589152 -73935426 + L3b LINE CR1 1329 1462 -121 239 0 32 0 chr3 153590286 153590317 -73934261 + (TC)n Simple_repeat Simple_repeat 1 32 0 * 282 29 0 0 chr3 153590316 153590351 -73934227 + (CA)n Simple_repeat Simple_repeat 1 35 0 303 28 0 0 chr3 153593012 153593048 -73931530 + (T)n Simple_repeat Simple_repeat 1 36 0 3573 10 0 0 chr3 153593051 153593466 -73931112 - L1HS LINE L1 0 6155 5741 1766 5 0 0 chr3 153593462 153593661 -73930917 + L1P1 LINE L1 5538 5736 -419 * 245 291 0 0 chr3 153594567 153594622 -73929956 + MIR SINE MIR 52 106 -102 203 350 68 10 chr3 153595106 153595209 -73929369 - MER5B DNA MER1_type -24 154 46 333 0 0 0 chr3 153596358 153596395 -73928183 + (TG)n Simple_repeat Simple_repeat 1 37 0 239 238 0 0 chr3 153597284 153597326 -73927252 - MIR SINE MIR -122 86 45 378 0 0 0 chr3 153597911 153597953 -73926625 + (T)n Simple_repeat Simple_repeat 1 42 0 229 313 38 12 chr3 153599294 153599374 -73925204 - L3 LINE CR1 -98 1479 1398 853 206 30 176 chr3 153599665 153600164 -73924414 - L1MC4a LINE L1 -1969 5839 5414 180 111 0 0 chr3 153601037 153601064 -73923514 + (TCCCC)n Simple_repeat Simple_repeat 4 30 0 473 0 18 0 chr3 153601080 153601137 -73923441 + (TTCC)n Simple_repeat Simple_repeat 2 59 0 22 70 0 0 chr3 153601187 153601230 -73923348 + AT_rich Low_complexity Low_complexity 1 43 0 653 290 12 0 chr3 153601463 153601632 -73922946 - MIR SINE MIR -12 250 80 916 177 0 18 chr3 153603363 153603527 -73921051 + FRAM SINE Alu 1 161 -15 2061 172 21 41 chr3 153605278 153605715 -73918863 + MSTC LTR MaLR 1 428 0 227 281 167 38 chr3 153606016 153606226 -73918352 + MIR SINE MIR 19 255 -7 2718 221 112 27 chr3 153606536 153607314 -73917264 - L1ME1 LINE L1 -25 6141 5298 188 180 0 20 chr3 153607324 153607374 -73917204 + GA-rich Low_complexity Low_complexity 4 52 0 1123 220 54 48 chr3 153607917 153608289 -73916289 - L1ME1 LINE L1 -858 5288 4915 381 326 57 13 chr3 153608292 153608522 -73916056 + L2 LINE L2 2977 3216 -97 234 211 0 19 chr3 153610130 153610182 -73914396 + CT-rich Low_complexity Low_complexity 2 52 0 240 145 26 13 chr3 153610277 153610353 -73914225 + (TA)n Simple_repeat Simple_repeat 2 78 0 377 78 97 7 chr3 153610379 153610533 -73914045 + (TA)n Simple_repeat Simple_repeat 2 169 0 2395 105 0 3 chr3 153611370 153611676 -73912902 - AluSx SINE Alu -7 305 1 282 143 0 0 chr3 153612161 153612210 -73912368 + (CA)n Simple_repeat Simple_repeat 1 49 0 1055 229 20 4 chr3 153612227 153612471 -73912107 + MIR SINE MIR 15 262 0 306 297 14 29 chr3 153612852 153612990 -73911588 + CT-rich Low_complexity Low_complexity 2 137 0 315 273 8 50 chr3 153613527 153613648 -73910930 - MIR SINE MIR -34 228 113 243 81 0 0 chr3 153614918 153614955 -73909623 + L1MA9 LINE L1 6270 6306 -6 545 191 0 11 chr3 153617534 153617623 -73906955 + Tigger5 DNA MER2_type 1 88 -2235 457 109 294 0 chr3 153617623 153617715 -73906863 + Tigger5 DNA MER2_type 2205 2323 0 1986 253 64 0 chr3 153617998 153618437 -73906141 - MLT1G LTR MaLR -103 487 21 841 283 176 14 chr3 153619199 153619545 -73905033 - MLT1I LTR MaLR -7 402 1 196 333 0 28 chr3 153619628 153619700 -73904878 - L2 LINE L2 -3 3310 3241 543 289 89 32 chr3 153619848 153620094 -73904484 - MIR SINE MIR 0 262 3 312 255 49 10 chr3 153620240 153620342 -73904236 + GA-rich Low_complexity Low_complexity 2 107 0 2200 93 7 17 chr3 153623101 153623402 -73901176 - AluSx SINE Alu -14 298 1 512 217 58 0 chr3 153623543 153623681 -73900897 + MIR SINE MIR 114 259 -3 297 0 0 0 chr3 153624656 153624689 -73899889 + (CA)n Simple_repeat Simple_repeat 2 34 0 204 179 0 0 chr3 153625073 153625112 -73899466 + (TAA)n Simple_repeat Simple_repeat 2 40 0 524 280 16 16 chr3 153625112 153625200 -73899378 - MIR SINE MIR 0 262 175 1365 192 47 88 chr3 153625200 153625422 -73899156 + MLT1B LTR MaLR 1 231 -159 2040 106 0 41 chr3 153625422 153625714 -73898864 + AluY SINE Alu 1 280 -31 216 0 0 0 chr3 153625718 153625742 -73898836 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 1365 192 47 88 chr3 153625742 153625921 -73898657 + MLT1B LTR MaLR 234 390 0 524 280 16 16 chr3 153625921 153626014 -73898564 - MIR SINE MIR -86 176 81 234 208 0 0 chr3 153627413 153627466 -73897112 + (CA)n Simple_repeat Simple_repeat 2 54 0 962 214 53 43 chr3 153627630 153627953 -73896625 - HAL1b LINE L1 -249 1099 774 552 239 70 32 chr3 153627957 153628270 -73896308 - HAL1b LINE L1 -613 735 308 611 213 157 2 chr3 153628545 153628793 -73895785 + MER2 DNA MER2_type 11 345 0 238 268 0 0 chr3 153630439 153630495 -73894083 - L2 LINE L2 -7 3265 3210 215 225 84 28 chr3 153630667 153630738 -73893840 + L2 LINE L2 3139 3213 -59 388 298 92 87 chr3 153631844 153632190 -73892388 + L2 LINE L2 2923 3270 -2 780 185 0 0 chr3 153632537 153632667 -73891911 - FLAM_A SINE Alu -3 130 1 3018 179 60 30 chr3 153632734 153632931 -73891647 - L1MD2 LINE L1 -1 6358 6168 261 0 0 0 chr3 153632931 153632960 -73891618 + (TG)n Simple_repeat Simple_repeat 2 30 0 3018 179 60 30 chr3 153632960 153633450 -73891128 - L1MD2 LINE L1 -191 6168 5651 1348 190 18 53 chr3 153633447 153633800 -73890778 + L1MC/D LINE L1 5363 5707 -464 * 234 223 165 29 chr3 153633780 153633883 -73890695 - L1ME4a LINE L1 -20 6101 5985 * 1604 197 27 7 chr3 153634132 153634431 -73890147 - AluJb SINE Alu -7 305 1 433 297 85 50 chr3 153634437 153634777 -73889801 - L1MD2 LINE L1 -457 5664 5313 399 314 79 29 chr3 153635251 153635531 -73889047 - HAL1b LINE L1 -1016 332 39 187 277 0 0 chr3 153636707 153636754 -73887824 + L2 LINE L2 3193 3239 -33 578 286 26 5 chr3 153639679 153639871 -73884707 - L1MC4a LINE L1 -1910 5898 5703 1212 167 0 9 chr3 153639872 153640094 -73884484 + L1MB4 LINE L1 5650 5869 -311 469 154 110 11 chr3 153640101 153640192 -73884386 + THE1C LTR MaLR 1 100 -328 30158 42 35 4 chr3 153640192 153643921 -73880657 - L1P LINE L1 -2293 3853 10 1205 129 35 43 chr3 153643921 153644153 -73880425 + THE1C LTR MaLR 146 375 0 1521 140 68 7 chr3 153644155 153644448 -73880130 + L1MB4 LINE L1 5869 6179 -1 617 250 0 0 chr3 153644503 153644623 -73879955 + FLAM_A SINE Alu 11 130 -12 571 296 104 29 chr3 153644632 153644912 -73879666 - L1MC4a LINE L1 -2099 5709 5409 426 282 40 48 chr3 153645625 153645852 -73878726 - L3 LINE CR1 -753 824 600 758 216 140 14 chr3 153646171 153646393 -73878185 - MIR SINE MIR 0 262 13 231 300 56 0 chr3 153647072 153647162 -73877416 - MER5B DNA MER1_type -1 177 83 266 295 0 26 chr3 153647216 153647294 -73877284 - MER5B DNA MER1_type -102 76 1 508 242 134 32 chr3 153647831 153648145 -73876433 - HAL1b LINE L1 -11 1337 992 302 282 115 17 chr3 153648213 153648387 -73876191 - HAL1b LINE L1 -493 855 665 247 234 0 169 chr3 153648452 153648495 -73876083 - MER5A DNA MER1_type -83 106 57 2269 109 6 0 chr3 153648495 153648806 -73875772 - AluSq SINE Alu 0 313 1 247 234 0 169 chr3 153648806 153648886 -73875692 - MER5A DNA MER1_type -132 57 4 645 211 31 137 chr3 153648980 153649302 -73875276 - HAL1b LINE L1 -753 595 308 258 265 0 0 chr3 153652330 153652398 -73872180 + LTR67 LTR ERVL 490 557 0 216 260 271 0 chr3 153652520 153652616 -73871962 - L2 LINE L2 -22 3250 3129 2358 95 0 3 chr3 153653191 153653486 -73871092 - AluSx SINE Alu -18 294 1 610 244 66 8 chr3 153653721 153653963 -73870615 - L2 LINE L2 -245 3068 2813 189 313 61 10 chr3 153655741 153655840 -73868738 + L2 LINE L2 3168 3271 -1 393 293 57 0 chr3 153657420 153657560 -73867018 - L1ME4a LINE L1 0 6121 5974 1107 254 81 40 chr3 153657573 153658018 -73866560 - L1ME4a LINE L1 -202 5919 5457 2044 129 31 34 chr3 153658187 153658544 -73866034 - L1MB8 LINE L1 0 6178 5823 342 301 127 41 chr3 153658771 153659140 -73865438 - L1ME4a LINE L1 -1117 5029 4629 28 29 0 0 chr3 153659293 153659328 -73865250 + AT_rich Low_complexity Low_complexity 1 35 0 313 351 67 4 chr3 153659500 153659739 -73864839 - L1ME4a LINE L1 -1886 4260 4007 2380 58 31 0 chr3 153659922 153660214 -73864364 - AluY SINE Alu -10 301 1 346 357 66 9 chr3 153660214 153660528 -73864050 - L1ME4a LINE L1 -2379 3767 3436 333 288 115 59 chr3 153660727 153661067 -73863511 - HAL1b LINE L1 -630 718 360 1256 146 4 58 chr3 153661257 153661483 -73863095 - MER20 DNA MER1_type -5 214 1 305 221 212 22 chr3 153662610 153662832 -73861746 - HAL1 LINE L1 0 2507 2244 510 125 0 0 chr3 153663033 153663113 -73861465 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 216 0 0 0 chr3 153663144 153663168 -73861410 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 43485 33 21 3 chr3 153663168 153669194 -73855384 - L1PA3 LINE L1 -13 6142 1 206 222 0 0 chr3 153669216 153669252 -73855326 + polypyrimidine Low_complexity Low_complexity 1 36 0 1521 219 7 0 chr3 153669252 153669554 -73855024 - AluJb SINE Alu -8 304 1 1586 278 94 30 chr3 153669703 153670607 -73853971 - HAL1 LINE L1 -803 1704 743 247 282 82 12 chr3 153670887 153670972 -73853606 - HAL1 LINE L1 -2374 133 43 241 281 0 0 chr3 153673933 153673990 -73850588 + (TCCA)n Simple_repeat Simple_repeat 2 58 0 201 318 78 23 chr3 153673990 153674119 -73850459 - L2 LINE L2 0 3272 3137 374 217 43 0 chr3 153675437 153675529 -73849049 - MIR3 SINE MIR -26 182 87 631 323 87 14 chr3 153676142 153676486 -73848092 + MLT1H1 LTR MaLR 2 370 -185 1587 99 5 5 chr3 153676489 153676711 -73847867 - pTR5 LTR ERV1 -2046 392 171 371 204 31 20 chr3 153676713 153676811 -73847767 - LTR30 LTR ERV1 -80 642 544 5381 141 178 29 chr3 153676811 153677927 -73846651 - pTR5 LTR ERV1 -413 2025 743 437 226 8 57 chr3 153677929 153678053 -73846525 + MLT1H1 LTR MaLR 373 490 -65 443 275 115 20 chr3 153678057 153678257 -73846321 + MIR SINE MIR 29 247 -15 202 189 0 0 chr3 153678776 153678813 -73845765 + GA-rich Low_complexity Low_complexity 3 39 0 574 119 0 0 chr3 153679553 153679637 -73844941 - MER53 DNA DNA 0 189 106 1917 161 29 77 chr3 153679637 153679883 -73844695 - MSTD LTR MaLR 0 396 177 1594 181 27 14 chr3 153679883 153680175 -73844403 - AluJb SINE Alu -16 296 1 1917 161 29 77 chr3 153680175 153680344 -73844234 - MSTD LTR MaLR -219 177 1 556 199 0 62 chr3 153680362 153680508 -73844070 - MER53 DNA DNA -51 138 2 1965 151 6 6 chr3 153680774 153681086 -73843492 - AluSx SINE Alu 0 312 1 317 23 0 23 chr3 153681198 153681241 -73843337 + (TAA)n Simple_repeat Simple_repeat 2 43 0 540 317 29 38 chr3 153682416 153682656 -73841922 + MIR SINE MIR 13 250 -12 3995 208 132 28 chr3 153682970 153684197 -73840381 + Charlie1a DNA MER1_type 2 1455 0 725 186 0 0 chr3 153684572 153684701 -73839877 + MER5A DNA MER1_type 61 189 0 278 306 40 16 chr3 153684701 153684821 -73839757 + MIR SINE MIR 116 238 -24 215 170 0 19 chr3 153685565 153685618 -73838960 + (TTCA)n Simple_repeat Simple_repeat 3 54 0 811 193 80 52 chr3 153685691 153685904 -73838674 + MER20 DNA MER1_type 1 219 0 1814 157 13 29 chr3 153686169 153686510 -73838068 - AluJb SINE Alu 0 340 5 1044 260 134 23 chr3 153687180 153687650 -73836928 - MLT1G1 LTR MaLR 0 595 74 25 51 0 0 chr3 153688316 153688355 -73836223 + AT_rich Low_complexity Low_complexity 1 39 0 2233 136 25 8 chr3 153688498 153688851 -73835727 + MSTB LTR MaLR 1 359 -67 315 0 0 0 chr3 153688857 153688892 -73835686 + (TG)n Simple_repeat Simple_repeat 2 36 0 320 181 24 60 chr3 153688892 153688975 -73835603 - LTR9 LTR ERV1 -87 525 446 374 135 27 54 chr3 153688983 153689057 -73835521 + MSTB LTR MaLR 355 426 0 2549 68 0 0 chr3 153690524 153690835 -73833743 + AluY SINE Alu 1 311 0 303 179 0 0 chr3 153690837 153690893 -73833685 + L1MC4 LINE L1 6648 6703 -1339 317 311 0 0 chr3 153690907 153690997 -73833581 + L1MC4 LINE L1 6614 6703 -1339 517 124 8 116 chr3 153691007 153691136 -73833442 + MLT2D LTR ERVL 1 115 -299 836 114 8 8 chr3 153691142 153691274 -73833304 + L1MA4A LINE L1 6159 6290 -13 320 118 0 0 chr3 153691297 153691348 -73833230 + L1M4 LINE L1 5571 5621 -563 559 235 45 29 chr3 153691348 153691636 -73832942 - MER110A LTR ERV1 -89 379 37 1665 175 7 24 chr3 153691649 153691940 -73832638 + AluJo SINE Alu 1 286 -26 183 222 0 0 chr3 153691940 153691985 -73832593 + (TA)n Simple_repeat Simple_repeat 2 46 0 279 0 0 0 chr3 153691985 153692016 -73832562 + (CA)n Simple_repeat Simple_repeat 2 32 0 1273 142 51 87 chr3 153692061 153692336 -73832242 + MLT2D LTR ERVL 103 367 -47 246 314 59 39 chr3 153693009 153693264 -73831314 - L1ME LINE L1 -217 5904 5645 334 250 31 70 chr3 153693384 153693512 -73831066 - MIR SINE MIR -108 154 32 203 226 16 32 chr3 153695340 153695402 -73829176 + CT-rich Low_complexity Low_complexity 1 61 0 226 269 13 26 chr3 153695641 153695719 -73828859 + (TATATG)n Simple_repeat Simple_repeat 4 80 0 191 114 29 0 chr3 153697416 153697451 -73827127 + GA-rich Low_complexity Low_complexity 3 38 0 241 277 24 12 chr3 153697730 153697835 -73826743 + MIR SINE MIR 43 147 -84 2859 189 34 7 chr3 153697958 153698555 -73826023 - L1MB7 LINE L1 0 6184 5572 3324 87 8 14 chr3 153698589 153699074 -73825504 - L1MA1 LINE L1 0 6302 5821 1497 132 4 0 chr3 153699083 153699310 -73825268 - L1PB1 LINE L1 -7 6144 5917 15727 176 37 10 chr3 153699310 153699543 -73825035 - L1PB1 LINE L1 -150 6717 6492 3987 30 4 0 chr3 153699543 153700008 -73824570 - L1PA4 LINE L1 0 6155 5689 15727 176 37 10 chr3 153700008 153706177 -73818401 - L1PB1 LINE L1 -375 6492 6 1482 144 108 10 chr3 153706194 153706585 -73817993 - L1M4 LINE L1 -601 5583 5163 638 75 0 21 chr3 153706585 153706679 -73817899 - AluY SINE Alu -6 305 214 234 223 165 29 chr3 153706934 153707037 -73817541 - L1ME4a LINE L1 -20 6101 5985 1579 201 27 7 chr3 153707286 153707585 -73816993 - AluJb SINE Alu -7 305 1 426 300 85 50 chr3 153707591 153707931 -73816647 - L1ME4a LINE L1 -457 5664 5313 399 314 79 29 chr3 153708405 153708685 -73815893 - HAL1b LINE L1 -1016 332 39 187 277 0 0 chr3 153709861 153709908 -73814670 + L2 LINE L2 3193 3239 -33 572 266 36 16 chr3 153712833 153713025 -73811553 - L1MC4a LINE L1 -1910 5898 5703 1237 162 0 9 chr3 153713026 153713248 -73811330 + L1MB4 LINE L1 5650 5869 -311 483 143 121 22 chr3 153713255 153713346 -73811232 + THE1C LTR MaLR 1 100 -328 30020 43 36 4 chr3 153713346 153717071 -73807507 - L1P LINE L1 -2293 3853 10 1218 125 35 43 chr3 153717071 153717303 -73807275 + THE1C LTR MaLR 146 375 0 1521 140 68 7 chr3 153717305 153717598 -73806980 + L1MB4 LINE L1 5869 6179 -1 632 242 0 0 chr3 153717653 153717773 -73806805 + FLAM_A SINE Alu 11 130 -12 578 306 104 22 chr3 153717782 153718060 -73806518 - L1MC4a LINE L1 -2099 5709 5409 426 282 40 48 chr3 153718773 153719000 -73805578 - L3 LINE CR1 -753 824 600 748 221 140 14 chr3 153719319 153719541 -73805037 - MIR SINE MIR 0 262 13 222 311 56 0 chr3 153720220 153720310 -73804268 - MER5B DNA MER1_type -1 177 83 266 295 0 26 chr3 153720364 153720442 -73804136 - MER5B DNA MER1_type -102 76 1 500 242 134 32 chr3 153720979 153721293 -73803285 - HAL1b LINE L1 -11 1337 992 302 282 115 17 chr3 153721361 153721535 -73803043 - HAL1b LINE L1 -493 855 665 259 238 0 156 chr3 153721600 153721641 -73802937 - MER5A DNA MER1_type -83 106 60 2232 117 0 3 chr3 153721641 153721950 -73802628 - AluSg SINE Alu -2 308 1 259 238 0 156 chr3 153721950 153722030 -73802548 - MER5A DNA MER1_type -129 60 4 645 211 31 137 chr3 153722124 153722446 -73802132 - HAL1b LINE L1 -753 595 308 258 265 0 0 chr3 153725475 153725543 -73799035 + LTR67 LTR ERVL 490 557 0 216 260 271 0 chr3 153725665 153725761 -73798817 - L2 LINE L2 -22 3250 3129 2358 95 0 3 chr3 153726336 153726631 -73797947 - AluSx SINE Alu -18 294 1 602 248 66 8 chr3 153726866 153727108 -73797470 - L2 LINE L2 -245 3068 2813 393 293 57 0 chr3 153730566 153730706 -73793872 - L1ME4a LINE L1 0 6121 5974 1100 253 83 38 chr3 153730719 153731162 -73793416 - L1ME4a LINE L1 -202 5919 5457 2012 122 30 44 chr3 153731329 153731690 -73792888 - L1MB8 LINE L1 0 6178 5823 355 304 127 41 chr3 153731917 153732286 -73792292 - L1ME4a LINE L1 -1117 5029 4629 28 29 0 0 chr3 153732439 153732474 -73792104 + AT_rich Low_complexity Low_complexity 1 35 0 327 347 67 4 chr3 153732646 153732885 -73791693 - L1ME4a LINE L1 -1886 4260 4007 2380 58 31 0 chr3 153733068 153733360 -73791218 - AluY SINE Alu -10 301 1 346 357 66 9 chr3 153733360 153733674 -73790904 - L1ME4a LINE L1 -2379 3767 3436 333 288 115 59 chr3 153733873 153734213 -73790365 - HAL1b LINE L1 -630 718 360 1248 150 4 58 chr3 153734403 153734629 -73789949 - MER20 DNA MER1_type -5 214 1 305 221 212 22 chr3 153735755 153735977 -73788601 - HAL1 LINE L1 0 2507 2244 510 125 0 0 chr3 153736178 153736258 -73788320 + (TTCC)n Simple_repeat Simple_repeat 3 82 0 216 0 0 0 chr3 153736289 153736313 -73788265 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 43513 33 22 2 chr3 153736313 153742327 -73782251 - L1PA3 LINE L1 -13 6142 10 1218 125 35 43 chr3 153742327 153742559 -73782019 + THE1C LTR MaLR 146 375 0 1521 140 68 7 chr3 153742561 153742854 -73781724 + L1MB4 LINE L1 5869 6179 -1 632 242 0 0 chr3 153742910 153743030 -73781548 + FLAM_A SINE Alu 11 130 -12 578 308 100 21 chr3 153743039 153743318 -73781260 - L1MC/D LINE L1 -2099 5709 5409 426 282 40 48 chr3 153744031 153744258 -73780320 - L3 LINE CR1 -753 824 600 761 216 140 14 chr3 153744577 153744799 -73779779 - MIR SINE MIR 0 262 13 222 311 56 0 chr3 153745478 153745568 -73779010 - MER5B DNA MER1_type -1 177 83 266 295 0 26 chr3 153745622 153745700 -73778878 - MER5B DNA MER1_type -102 76 1 189 107 0 0 chr3 153746982 153747010 -73777568 + (ATG)n Simple_repeat Simple_repeat 3 30 0 253 229 57 0 chr3 153747054 153747124 -73777454 - MIR SINE MIR -104 158 85 260 259 194 0 chr3 153749202 153749310 -73775268 - MIR3 SINE MIR -47 161 33 252 188 109 109 chr3 153749574 153749702 -73774876 - MIR SINE MIR -113 149 22 21 0 0 0 chr3 153751872 153751893 -73772685 + AT_rich Low_complexity Low_complexity 1 21 0 2257 92 0 33 chr3 153752926 153753230 -73771348 - AluSx SINE Alu -18 294 1 227 152 121 61 chr3 153753531 153753597 -73770981 + L2 LINE L2 3238 3307 -6 4338 50 6 0 chr3 153754169 153754705 -73769873 + L1PA8 LINE L1 5634 6172 0 345 277 0 34 chr3 153755143 153755262 -73769316 - MIR SINE MIR -110 152 38 478 202 34 0 chr3 153756613 153756702 -73767876 + MIR SINE MIR 81 172 -90 316 281 89 27 chr3 153757742 153757888 -73766690 - MIR SINE MIR -3 259 105 423 342 33 33 chr3 153760873 153761116 -73763462 + MIR SINE MIR 12 254 -8 281 286 81 24 chr3 153762071 153762227 -73762351 + MIR SINE MIR 20 188 -66 180 318 16 16 chr3 153762230 153762293 -73762285 - MIR SINE MIR -124 84 22 888 237 16 0 chr3 153762825 153763011 -73761567 + MER5A DNA MER1_type 1 189 0 2324 69 0 0 chr3 153763319 153763608 -73760970 - AluSg SINE Alu -21 289 1 3691 32 9 0 chr3 153764026 153764463 -73760115 - L1PA4 LINE L1 -3 6152 5712 351 294 166 84 chr3 153765345 153765845 -73758733 - L3 LINE CR1 -302 1275 735 621 274 79 8 chr3 153765856 153766050 -73758528 + MIR SINE MIR 2 220 -42 1877 105 3 79 chr3 153766050 153766400 -73758178 + AluSg SINE Alu 1 327 0 621 274 79 8 chr3 153766400 153766444 -73758134 + MIR SINE MIR 220 259 -3 246 368 121 29 chr3 153766470 153766818 -73757760 - L3 LINE CR1 -1013 564 185 466 318 109 14 chr3 153767263 153767483 -73757095 + MIR SINE MIR 13 253 -9 2289 82 0 3 chr3 153767564 153767868 -73756710 + AluSc SINE Alu 1 303 -6 615 81 0 0 chr3 153768765 153768851 -73755727 + (TCCA)n Simple_repeat Simple_repeat 1 86 0 630 257 39 92 chr3 153769046 153769110 -73755468 + L1ME4a LINE L1 5479 5545 -576 1874 152 0 7 chr3 153769110 153769420 -73755158 - AluSx SINE Alu -4 308 1 630 257 39 92 chr3 153769420 153769736 -73754842 + L1ME4a LINE L1 5545 5839 -282 180 0 0 0 chr3 153769788 153769808 -73754770 + (CA)n Simple_repeat Simple_repeat 2 21 0 248 304 71 9 chr3 153770115 153770227 -73754351 - L2 LINE L2 -223 3049 2931 198 71 0 0 chr3 153770963 153770991 -73753587 + (A)n Simple_repeat Simple_repeat 1 28 0 1173 200 33 47 chr3 153770991 153771026 -73753552 + MLT1A1 LTR MaLR 30 64 -301 1998 111 0 29 chr3 153771026 153771342 -73753236 - AluSc SINE Alu -2 307 1 1173 200 33 47 chr3 153771342 153771581 -73752997 + MLT1A1 LTR MaLR 64 300 -65 187 77 26 26 chr3 153772009 153772048 -73752530 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 462 268 42 24 chr3 153773045 153773213 -73751365 + MIR SINE MIR 88 258 -4 3351 178 174 24 chr3 153774014 153774860 -73749718 - L1MB8 LINE L1 -9 6169 5118 243 0 0 0 chr3 153774860 153774887 -73749691 + (TA)n Simple_repeat Simple_repeat 2 28 0 3351 178 174 24 chr3 153774887 153775122 -73749456 - L1MB8 LINE L1 -1060 5118 4920 208 211 40 105 chr3 153775449 153775525 -73749053 + MIR SINE MIR 90 160 -102 371 321 42 24 chr3 153776725 153776890 -73747688 + MIR SINE MIR 6 173 -89 924 257 68 11 chr3 153776905 153777170 -73747408 - MLT1J LTR MaLR -7 504 225 560 266 101 15 chr3 153777551 153777750 -73746828 - MIR SINE MIR -14 248 33 619 280 32 0 chr3 153777864 153778021 -73746557 + MIR SINE MIR 31 192 -70 185 174 22 22 chr3 153779979 153780025 -73744553 + MIR SINE MIR 89 134 -74 418 218 77 51 chr3 153780036 153780192 -73744386 + MER117 DNA MER1_type 27 186 -11 264 122 0 0 chr3 153781253 153781294 -73743284 + (TTCC)n Simple_repeat Simple_repeat 2 42 0 1799 137 7 4 chr3 153781297 153781574 -73743004 - AluSx SINE Alu -34 278 1 1777 162 0 13 chr3 153782083 153782385 -73742193 + AluSx SINE Alu 1 298 -14 506 297 22 22 chr3 153782526 153782755 -73741823 - L1ME4a LINE L1 -262 5859 5631 182 239 0 43 chr3 153783708 153783754 -73740824 - L3 LINE CR1 -538 1039 996 303 269 0 0 chr3 153783932 153783999 -73740579 + L2 LINE L2 3204 3270 -2 400 303 97 65 chr3 153784006 153784760 -73739818 + L2 LINE L2 2495 3268 -4 228 318 24 12 chr3 153785492 153785577 -73739001 + MIR SINE MIR 40 125 -83 344 301 98 0 chr3 153785744 153785887 -73738691 + MER103 DNA DNA 8 164 -2 24 53 0 0 chr3 153786511 153786549 -73738029 + AT_rich Low_complexity Low_complexity 1 38 0 1028 276 183 49 chr3 153787617 153788034 -73736544 + L2 LINE L2 2197 2557 -756 1920 115 0 33 chr3 153788034 153788339 -73736239 + AluSx SINE Alu 1 295 -17 1028 276 183 49 chr3 153788339 153788823 -73735755 + L2 LINE L2 2557 3236 -77 2846 202 83 47 chr3 153789280 153790250 -73734328 - L1MC5 LINE L1 -34 7927 6923 352 258 121 8 chr3 153790640 153790772 -73733806 + MIR3 SINE MIR 47 193 -15 546 285 30 0 chr3 153792840 153793005 -73731573 + MIR SINE MIR 90 259 -3 245 274 41 0 chr3 153793033 153793106 -73731472 + MIR SINE MIR 171 246 -16 238 333 109 7 chr3 153793560 153793698 -73730880 + L3 LINE CR1 1341 1492 -85 590 318 35 5 chr3 153794856 153795054 -73729524 - MIR SINE MIR -2 260 57 561 279 117 22 chr3 153795406 153795722 -73728856 - L1ME4a LINE L1 -2150 5658 5313 1910 146 3 0 chr3 153795963 153796264 -73728314 - AluSx SINE Alu 0 312 11 439 321 88 9 chr3 153796462 153796907 -73727671 - L1ME4a LINE L1 -1313 4833 4354 271 229 146 21 chr3 153798759 153798855 -73725723 - MIR3 SINE MIR -87 121 14 444 309 85 27 chr3 153799648 153799871 -73724707 + MIR SINE MIR 13 248 -14 336 314 65 0 chr3 153800164 153800288 -73724290 + MIR SINE MIR 75 206 -56 1154 278 88 31 chr3 153800314 153800968 -73723610 + L2 LINE L2 2528 3232 -81 358 261 23 31 chr3 153801030 153801160 -73723418 - MIR SINE MIR -29 233 105 252 211 90 24 chr3 153803583 153803669 -73720909 - MIR SINE MIR -46 162 77 431 273 50 56 chr3 153805149 153805347 -73719231 + L2 LINE L2 3117 3313 0 353 346 72 57 chr3 153806086 153806739 -73717839 - L2 LINE L2 -45 3227 2554 248 333 108 19 chr3 153806852 153807212 -73717366 - L2 LINE L2 -1360 1954 1563 460 356 23 19 chr3 153808375 153808591 -73715987 + MIR SINE MIR 15 231 -31 180 267 0 0 chr3 153809939 153809999 -73714579 + (TGGA)n Simple_repeat Simple_repeat 4 63 0 227 343 89 41 chr3 153810389 153810558 -73714020 - L2 LINE L2 0 3272 3096 251 146 18 0 chr3 153811004 153811059 -73713519 + (TG)n Simple_repeat Simple_repeat 1 56 0 188 280 0 0 chr3 153812305 153812355 -73712223 - L2 LINE L2 -2 3311 3262 301 304 33 0 chr3 153812478 153812570 -73712008 - MIR SINE MIR -62 200 106 233 322 211 7 chr3 153812955 153813107 -73711471 - MIR SINE MIR -6 256 74 410 265 239 18 chr3 153813701 153813973 -73710605 - MER102b DNA MER1_type -9 332 1 208 333 96 15 chr3 153814102 153814237 -73710341 + MIR SINE MIR 47 192 -70 199 330 76 34 chr3 153815517 153815635 -73708943 + L2 LINE L2 3143 3265 -7 544 289 0 8 chr3 153816002 153816130 -73708448 - L2 LINE L2 0 3313 3187 397 284 14 54 chr3 153816826 153816974 -73707604 + L2 LINE L2 3126 3267 -5 222 171 0 0 chr3 153817660 153817701 -73706877 + T-rich Low_complexity Low_complexity 1 41 0 1135 331 130 28 chr3 153818644 153819757 -73704821 - L2 LINE L2 -1897 1417 191 411 252 51 93 chr3 153820641 153820855 -73703723 + MIR3 SINE MIR 4 208 0 900 198 64 0 chr3 153820861 153821033 -73703545 - MER5A DNA MER1_type -1 188 6 377 212 1 103 chr3 153823506 153823628 -73700950 - MIR SINE MIR -63 145 44 694 154 0 0 chr3 153823828 153823938 -73700640 + L1M4 LINE L1 5606 5715 -463 295 276 99 46 chr3 153826468 153826620 -73697958 + L2 LINE L2 3107 3266 -6 1989 287 128 25 chr3 153827031 153828216 -73696362 + L2 LINE L2 1907 3313 0 648 380 120 18 chr3 153828225 153828960 -73695618 + L3 LINE CR1 694 1503 -74 1497 273 42 13 chr3 153828970 153829417 -73695161 - LTR16B LTR ERVL -4 460 1 339 154 140 14 chr3 153831181 153831324 -73693254 - Charlie7 DNA MER1_type -56 2556 2396 1576 287 112 35 chr3 153831526 153832043 -73692535 - L2 LINE L2 0 3313 2837 1744 135 59 3 chr3 153832043 153832332 -73692246 + AluSx SINE Alu 1 305 -7 1576 287 112 35 chr3 153832332 153832911 -73691667 - L2 LINE L2 -476 2837 2118 348 300 44 27 chr3 153832922 153833068 -73691510 + MIR3 SINE MIR 12 165 -65 254 278 142 91 chr3 153833523 153833699 -73690879 - MIR SINE MIR -22 240 56 310 295 90 65 chr3 153834303 153834503 -73690075 - MIR SINE MIR -1 261 57 961 207 75 24 chr3 153834830 153835043 -73689535 - MER58A DNA MER1_type 0 224 1 191 370 34 17 chr3 153835538 153835657 -73688921 - L2 LINE L2 0 3313 3193 244 286 79 63 chr3 153836968 153837094 -73687484 - L3 LINE CR1 -456 1121 994 301 283 112 45 chr3 153839678 153839947 -73684631 + MER102b DNA MER1_type 51 337 -4 619 262 33 27 chr3 153840865 153841048 -73683530 - MER5A DNA MER1_type -5 184 1 2230 97 7 0 chr3 153841053 153841352 -73683226 + AluSx SINE Alu 5 305 -7 940 186 5 0 chr3 153841367 153841555 -73683023 - MER53 DNA DNA 0 189 1 225 376 8 26 chr3 153841770 153841887 -73682691 - MIR SINE MIR -122 140 26 24 32 0 0 chr3 153844075 153844106 -73680472 + AT_rich Low_complexity Low_complexity 1 31 0 332 354 83 40 chr3 153844159 153844436 -73680142 - L3b LINE CR1 -2 1581 1293 1136 68 0 6 chr3 153844926 153845088 -73679490 - AluYa5 SINE Alu -150 161 1 181 206 0 0 chr3 153847953 153847987 -73676591 + MIR3 SINE MIR 164 197 -11 243 311 110 53 chr3 153848045 153848254 -73676324 + L3 LINE CR1 1343 1563 -14 314 281 119 50 chr3 153848933 153849093 -73675485 - MIR SINE MIR -27 181 11 1052 336 136 29 chr3 153850095 153850964 -73673614 + L3 LINE CR1 48 1009 -568 584 273 165 5 chr3 153850969 153851163 -73673415 - MIR SINE MIR -2 260 36 790 323 112 41 chr3 153851187 153851748 -73672830 + L3 LINE CR1 965 1565 -12 263 372 43 21 chr3 153853369 153853557 -73671021 - MIR SINE MIR -1 261 70 1206 251 122 26 chr3 153853713 153854099 -73670479 + LTR16C LTR ERVL 69 491 0 2025 107 7 29 chr3 153854509 153854817 -73669761 + AluSg SINE Alu 1 301 -9 220 254 17 17 chr3 153858708 153858767 -73665811 + CT-rich Low_complexity Low_complexity 3 61 0 767 252 14 0 chr3 153859122 153859269 -73665309 - MER63A DNA MER1_type -3 207 59 745 172 6 6 chr3 153859289 153859446 -73665132 + CT-rich Low_complexity Low_complexity 3 159 0 413 193 0 48 chr3 153859446 153859529 -73665049 - MER63A DNA MER1_type 0 117 39 192 310 35 9 chr3 153859658 153859774 -73664804 + L3b LINE CR1 1259 1377 -206 269 293 95 54 chr3 153860760 153860907 -73663671 + L2 LINE L2 3119 3271 -1 225 300 71 0 chr3 153861249 153861319 -73663259 - MER91C DNA MER1_type -62 78 4 311 321 33 83 chr3 153861752 153861992 -73662586 - MIR SINE MIR -3 259 32 271 339 176 0 chr3 153862555 153862720 -73661858 + MER117 DNA MER1_type 4 197 0 712 223 27 22 chr3 153863217 153863401 -73661177 - MER5A DNA MER1_type -4 185 1 2041 134 7 0 chr3 153864233 153864531 -73660047 + AluSx SINE Alu 1 300 -12 2195 125 0 0 chr3 153864531 153864836 -73659742 + AluSg SINE Alu 1 305 -5 24 0 0 0 chr3 153865335 153865359 -73659219 + AT_rich Low_complexity Low_complexity 1 24 0 217 214 0 0 chr3 153865461 153865503 -73659075 + CT-rich Low_complexity Low_complexity 4 45 0 653 221 17 50 chr3 153865674 153865715 -73658863 + MER5B DNA MER1_type 4 45 -133 921 222 6 0 chr3 153865715 153865891 -73658687 + MER45A DNA AcHobo 1 177 -1 653 221 17 50 chr3 153865891 153866030 -73658548 + MER5B DNA MER1_type 45 178 0 657 213 90 21 chr3 153866405 153866593 -73657985 + MIR SINE MIR 49 249 -13 345 209 9 17 chr3 153866780 153866895 -73657683 + (CATA)n Simple_repeat Simple_repeat 2 115 0 188 167 24 24 chr3 153867131 153867173 -73657405 - L2 LINE L2 -8 3264 3223 767 174 8 0 chr3 153867277 153867409 -73657169 + FLAM_A SINE Alu 1 133 0 320 157 29 0 chr3 153867417 153867487 -73657091 + GA-rich Low_complexity Low_complexity 1 72 0 433 272 170 43 chr3 153868040 153868363 -73656215 + LTR16B LTR ERVL 1 364 -86 743 195 54 13 chr3 153870120 153870269 -73654309 - MLT1G1 LTR MaLR -11 584 430 758 239 148 27 chr3 153870321 153870584 -73653994 - MLT1G1 LTR MaLR -298 297 3 192 300 83 8 chr3 153870693 153870813 -73653765 - L2 LINE L2 -200 3072 2944 252 0 0 0 chr3 153871646 153871674 -73652904 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 7844 18 0 0 chr3 153871674 153872606 -73651972 - L1PA2 LINE L1 -24 6131 5200 809 118 0 15 chr3 153873291 153873426 -73651152 + FLAM_C SINE Alu 1 133 0 395 298 76 23 chr3 153873691 153873862 -73650716 + MIR3 SINE MIR 21 200 -8 312 310 60 0 chr3 153874430 153874530 -73650048 - MER117 DNA MER1_type -60 137 32 676 266 23 5 chr3 153875056 153875270 -73649308 - MIR SINE MIR -25 237 20 21 36 0 0 chr3 153875303 153875331 -73649247 + AT_rich Low_complexity Low_complexity 1 28 0 637 314 118 21 chr3 153876876 153877603 -73646975 - L2 LINE L2 -2 3311 2507 693 271 169 27 chr3 153878410 153878894 -73645684 + L2 LINE L2 2142 2694 -620 5354 70 4 40 chr3 153878997 153879743 -73644835 + L1PA8 LINE L1 5452 6170 -2 353 125 18 0 chr3 153879771 153879827 -73644751 - MER58 DNA MER1_type 0 2420 2364 1644 73 0 5 chr3 153879928 153880147 -73644431 - L1MA2 LINE L1 -318 5986 5769 300 258 90 42 chr3 153880143 153880310 -73644268 - L1MA2 LINE L1 -2379 5429 5255 * 385 267 17 100 chr3 153880574 153880814 -73643764 - L1MC4 LINE L1 -1 8041 7822 1465 198 78 52 chr3 153880838 153881263 -73643315 - L1ME2 LINE L1 -10 6154 5719 21 36 0 0 chr3 153881322 153881350 -73643228 + AT_rich Low_complexity Low_complexity 1 28 0 1972 141 7 3 chr3 153881532 153881823 -73642755 + AluSq SINE Alu 1 292 -21 350 293 9 9 chr3 153882350 153882456 -73642122 - L2 LINE L2 0 3313 3208 1098 240 48 51 chr3 153882645 153883020 -73641558 - MLT1A2 LTR MaLR 0 374 1 450 0 0 0 chr3 153883255 153883305 -73641273 + (TG)n Simple_repeat Simple_repeat 2 51 0 2451 265 105 12 chr3 153883597 153884562 -73640016 + L1MC4 LINE L1 6476 7617 -425 365 256 0 0 chr3 153884627 153884713 -73639865 + L1MC4 LINE L1 7956 8041 -1 183 353 47 0 chr3 153884717 153884802 -73639776 - L2 LINE L2 -605 2709 2621 190 287 31 31 chr3 153884891 153885020 -73639558 - L2 LINE L2 -829 2485 2357 414 319 7 21 chr3 153885223 153885364 -73639214 - L2 LINE L2 -963 2351 2213 337 261 15 45 chr3 153885544 153885678 -73638900 - MIR SINE MIR -55 153 24 1979 253 86 64 chr3 153886037 153887700 -73636878 - L1ME LINE L1 -4202 1878 191 2515 87 3 0 chr3 153889797 153890109 -73634469 - AluSp SINE Alu 0 313 1 770 219 22 6 chr3 153890343 153890526 -73634052 - MER5A DNA MER1_type -2 187 2 2247 130 0 0 chr3 153891087 153891395 -73633183 + AluSx SINE Alu 1 308 -4 420 20 0 0 chr3 153892071 153892120 -73632458 + (CA)n Simple_repeat Simple_repeat 1 49 0 213 252 61 69 chr3 153893354 153893485 -73631093 - L2 LINE L2 -67 3246 3117 1200 229 71 17 chr3 153893888 153894241 -73630337 + MLT1C LTR MaLR 9 380 -87 261 274 128 7 chr3 153896255 153896394 -73628184 + MIR SINE MIR 13 150 -58 524 247 29 96 chr3 153898480 153898719 -73625859 - L1MC4 LINE L1 -668 7374 7152 1433 160 114 55 chr3 153900814 153901157 -73623421 + L1PA16 LINE L1 5804 6166 0 318 310 43 33 chr3 153901570 153901754 -73622824 - L1MC4 LINE L1 -2049 5759 5574 * 1455 249 52 65 chr3 153901739 153902406 -73622172 - L1MC4 LINE L1 -11 8031 7373 238 250 48 12 chr3 153903231 153903315 -73621263 - MIR SINE MIR -79 183 97 26 0 0 0 chr3 153904567 153904593 -73619985 + AT_rich Low_complexity Low_complexity 1 26 0 2588 146 81 2 chr3 153904593 153905026 -73619552 - L1PA16 LINE L1 -9 6157 5691 2607 108 19 8 chr3 153906699 153907070 -73617508 - THE1C LTR MaLR 0 375 1 10263 120 49 3 chr3 153907070 153908580 -73615998 - THE1C-int LTR MaLR 0 1580 1 2896 90 0 3 chr3 153908580 153908956 -73615622 - THE1C LTR MaLR 0 375 1 324 232 113 46 chr3 153909052 153909203 -73615375 - MER5B DNA MER1_type 0 178 18 266 200 180 20 chr3 153909203 153909303 -73615275 - MER117 DNA MER1_type -68 129 14 609 198 198 0 chr3 153909338 153909495 -73615083 + MER5A DNA MER1_type 1 188 -1 257 329 30 43 chr3 153909519 153909683 -73614895 + MER5B DNA MER1_type 17 178 0 2067 214 47 5 chr3 153910062 153910510 -73614068 - MLT1C LTR MaLR 0 467 1 339 44 0 0 chr3 153911295 153911340 -73613238 + (CA)n Simple_repeat Simple_repeat 2 46 0 186 71 0 0 chr3 153912739 153912767 -73611811 + (TCTCTG)n Simple_repeat Simple_repeat 3 30 0 333 313 84 11 chr3 153913726 153913905 -73610673 + L2 LINE L2 2828 3019 -253 393 188 89 0 chr3 153913945 153914057 -73610521 - MIR SINE MIR -129 133 12 255 237 96 45 chr3 153914189 153914345 -73610233 + L2 LINE L2 3150 3313 0 223 319 108 16 chr3 153915674 153915859 -73608719 + MIR3 SINE MIR 7 208 0 1989 165 10 0 chr3 153916813 153917122 -73607456 + AluSx SINE Alu 1 312 0 198 0 0 0 chr3 153919038 153919060 -73605518 + (A)n Simple_repeat Simple_repeat 1 22 0 2103 120 0 3 chr3 153919062 153919353 -73605225 + AluSc SINE Alu 14 303 -6 335 257 46 0 chr3 153920094 153920203 -73604375 + MIR SINE MIR 59 172 -90 536 272 56 47 chr3 153920625 153920967 -73603611 - L1ME4a LINE L1 -2 6119 5775 410 293 103 17 chr3 153921553 153921785 -73602793 - L2 LINE L2 -2 3270 3019 341 348 81 4 chr3 153922121 153922380 -73602198 - L2 LINE L2 -606 2708 2430 456 295 16 75 chr3 153924067 153924321 -73600257 + MIR SINE MIR 24 262 0 37 0 0 0 chr3 153924344 153924381 -73600197 + AT_rich Low_complexity Low_complexity 1 37 0 43488 33 25 2 chr3 153924381 153930397 -73594181 - L1PA2 LINE L1 0 6155 4 27 0 0 0 chr3 153931493 153931520 -73593058 + AT_rich Low_complexity Low_complexity 1 27 0 349 214 56 0 chr3 153933835 153933924 -73590654 + MIR SINE MIR 71 164 -98 554 253 138 27 chr3 153933930 153934155 -73590423 - MIR SINE MIR 0 262 13 1051 193 11 0 chr3 153934160 153934347 -73590231 - MER5A DNA MER1_type 0 189 1 291 282 26 0 chr3 153936128 153936206 -73588372 + L2 LINE L2 3188 3267 -5 1169 306 147 34 chr3 153937064 153938413 -73586165 - L2 LINE L2 -173 3099 1603 279 306 90 28 chr3 153938908 153939052 -73585526 - MIR SINE MIR -105 157 5 243 311 66 0 chr3 153939148 153939270 -73585308 + MIR SINE MIR 132 261 -1 807 271 14 9 chr3 153941119 153941340 -73583238 - MER58A DNA MER1_type -1 223 2 214 220 0 51 chr3 153941877 153941936 -73582642 + (TTTA)n Simple_repeat Simple_repeat 4 59 0 748 211 26 32 chr3 153944422 153944612 -73579966 + MER5A DNA MER1_type 1 189 0 405 274 166 60 chr3 153945619 153945999 -73578579 - L2 LINE L2 -3 3310 2891 352 348 21 0 chr3 153946021 153946162 -73578416 - MIR SINE MIR -73 189 46 2185 119 14 17 chr3 153946678 153947039 -73577539 - L1MA5A LINE L1 -1 6296 5937 228 194 0 16 chr3 153947213 153947275 -73577303 - L1MCa LINE L1 -4371 2055 1995 312 308 116 30 chr3 153947313 153948194 -73576384 - L1M4 LINE L1 -1300 4846 3890 1036 273 39 41 chr3 153948561 153948949 -73575629 - L1ME3A LINE L1 -222 5948 5562 1119 212 79 4 chr3 153948960 153949201 -73575377 - HERVL40 LTR ERVL -2580 2950 2692 1077 240 90 16 chr3 153949201 153949513 -73575065 + MLT1D LTR MaLR 165 499 -6 263 273 0 0 chr3 153949611 153949666 -73574912 - HERVL40 LTR ERVL -3225 2305 2251 * 2792 249 39 85 chr3 153949664 153950640 -73573938 - HERVL40 LTR ERVL -4599 931 1 1559 240 97 25 chr3 153950641 153951125 -73573453 - LTR40a LTR ERVL 0 519 1 2308 223 36 72 chr3 153951134 153952048 -73572530 - L1MC4 LINE L1 -1890 6152 5272 3689 188 23 45 chr3 153952148 153952969 -73571609 - L1MA9 LINE L1 -34 6278 5476 1675 158 83 27 chr3 153952980 153953316 -73571262 - MSTA LTR MaLR -53 375 21 363 294 105 14 chr3 153953358 153953501 -73571077 - MLT1H LTR MaLR -276 273 118 9269 35 0 0 chr3 153953509 153954602 -73569976 - L1PA2 LINE L1 -1886 4260 3168 9376 32 0 1 chr3 153954603 153956484 -73568094 + L1PA2 LINE L1 4276 6155 0 266 200 29 57 chr3 153956513 153956583 -73567995 - MLT1H LTR MaLR -427 122 55 11135 58 5 9 chr3 153956583 153958238 -73566340 - HUERS-P1 LTR ERV1 -1770 4493 2880 3574 105 69 2 chr3 153958236 153958761 -73565817 - HUERS-P1 LTR ERV1 -5700 563 4 * 1170 83 0 0 chr3 153958763 153958908 -73565670 - LTR8 LTR ERV1 0 691 547 1097 179 4 29 chr3 153958908 153959148 -73565430 - L1MA9 LINE L1 -681 5487 5254 3775 185 55 3 chr3 153959159 153959920 -73564658 + L1 LINE L1 4044 4844 -1302 1836 156 122 6 chr3 153959921 153960248 -73564330 - MER47A DNA MER2_type -1 365 1 1471 201 6 33 chr3 153960249 153960582 -73563996 + L1 LINE L1 4844 5167 -979 186 43 0 0 chr3 153960602 153960625 -73563953 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1882 163 0 10 chr3 153960631 153960925 -73563653 - AluJo SINE Alu -11 301 11 2450 229 129 31 chr3 153960958 153961222 -73563356 - L1MC4 LINE L1 -865 5281 5044 2623 59 0 0 chr3 153961222 153961525 -73563053 - AluY SINE Alu -8 303 1 2450 229 129 31 chr3 153961525 153961594 -73562984 - L1MC4 LINE L1 -1102 5044 4983 336 24 0 0 chr3 153961594 153961635 -73562943 + (TG)n Simple_repeat Simple_repeat 2 42 0 2450 229 129 31 chr3 153961635 153962337 -73562241 - L1MC4 LINE L1 -1163 4983 4143 185 184 41 0 chr3 153962341 153962390 -73562188 + CT-rich Low_complexity Low_complexity 1 51 0 12170 172 34 44 chr3 153962441 153965220 -73559358 + L1MC3 LINE L1 5025 7777 -8 1086 286 51 55 chr3 153965292 153965753 -73558825 + L1MC4a LINE L1 5254 5713 -2095 2202 101 0 13 chr3 153965753 153966059 -73558519 - AluSc SINE Alu -7 302 1 1086 286 51 55 chr3 153966059 153966248 -73558330 + L1MC4a LINE L1 5713 5901 -1907 1130 57 0 0 chr3 153966502 153966642 -73557936 + AluY SINE Alu 167 306 -5 269 305 20 46 chr3 153966669 153966820 -73557758 + HAL1 LINE L1 1210 1356 -1151 568 274 91 33 chr3 153966917 153967224 -73557354 - L1MC/D LINE L1 -2086 5722 5398 644 233 97 45 chr3 153967229 153967559 -73557019 + HAL1 LINE L1 1406 1752 -755 1682 161 33 7 chr3 153967958 153968252 -73556326 - AluJb SINE Alu 0 301 1 27 62 0 0 chr3 153968727 153968775 -73555803 + AT_rich Low_complexity Low_complexity 1 48 0 451 265 106 7 chr3 153968888 153969039 -73555539 + MIR3 SINE MIR 37 202 -6 188 283 48 114 chr3 153969036 153969202 -73555376 + L3 LINE CR1 361 515 -1062 * 2870 139 17 21 chr3 153969639 153970107 -73554471 - MLT1C LTR MaLR -1 466 1 227 278 14 14 chr3 153970649 153970721 -73553857 - MLT1I LTR MaLR -263 146 75 331 328 71 15 chr3 153971100 153971298 -73553280 + L3 LINE CR1 739 947 -630 230 180 20 20 chr3 153971342 153971392 -73553186 + (TG)n Simple_repeat Simple_repeat 2 51 0 531 313 122 9 chr3 153971770 153972000 -73552578 + MIR SINE MIR 5 260 -2 250 226 89 48 chr3 153972018 153972142 -73552436 - L1ME LINE L1 -255 5866 5738 582 240 128 0 chr3 153972203 153972360 -73552218 - MER5A DNA MER1_type -6 183 4 491 284 81 20 chr3 153972403 153972600 -73551978 + L3 LINE CR1 1180 1388 -189 2962 221 85 29 chr3 153973689 153974405 -73550173 - MER21B LTR ERV1 -107 756 1 2142 110 28 3 chr3 153974439 153974730 -73549848 + AluSg SINE Alu 1 298 -12 236 296 113 42 chr3 153974899 153975041 -73549537 + L2 LINE L2 3113 3264 -8 657 282 45 33 chr3 153976424 153976669 -73547909 - MIR SINE MIR -2 260 13 2478 164 20 52 chr3 153977004 153977450 -73547128 + MSTB1 LTR MaLR 1 432 0 319 257 55 35 chr3 153980534 153980667 -73543911 + L1ME1 LINE L1 6009 6108 -58 354 183 0 0 chr3 153980669 153980740 -73543838 + (TG)n Simple_repeat Simple_repeat 1 71 0 180 111 0 0 chr3 153980740 153980767 -73543811 + (GA)n Simple_repeat Simple_repeat 1 27 0 290 336 15 15 chr3 153981194 153981331 -73543247 - ERVL LTR ERVL -1722 3763 3627 405 0 0 0 chr3 153981335 153981380 -73543198 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 1923 169 15 46 chr3 153981380 153981770 -73542808 - L1PA16 LINE L1 -15 6151 5774 778 137 24 5 chr3 153981784 153981924 -73542654 - L1ME LINE L1 -370 5786 5657 626 258 128 84 chr3 153981980 153982372 -73542206 + MLT1I LTR MaLR 1 409 0 305 323 19 12 chr3 153982795 153982956 -73541622 - ERVL LTR ERVL -4583 1181 1020 236 232 54 0 chr3 153983601 153983657 -73540921 - LTR67 LTR ERVL 0 557 499 1668 209 86 27 chr3 153984432 153984806 -73539772 - MSTD LTR MaLR 0 396 1 365 325 92 25 chr3 153985470 153985633 -73538945 + L2 LINE L2 3099 3272 0 325 271 110 0 chr3 153986032 153986150 -73538428 + MIR SINE MIR 108 238 -24 2125 231 37 24 chr3 153986415 153986952 -73537626 + L1ME3A LINE L1 5588 6131 -39 287 266 123 75 chr3 153987871 153988123 -73536455 + MLT1J LTR MaLR 110 373 -138 755 281 40 0 chr3 153988347 153988546 -73536032 - ERVL LTR ERVL -2215 3549 3343 183 243 54 54 chr3 153988546 153988620 -73535958 + L3 LINE CR1 1244 1317 -260 3679 305 64 62 chr3 153988648 153989010 -73535568 - ERVL LTR ERVL -2569 3195 2835 2036 128 3 13 chr3 153989010 153989315 -73535263 - AluSx SINE Alu -8 304 3 3679 305 64 62 chr3 153989315 153989515 -73535063 - ERVL LTR ERVL -2929 2835 2637 5843 31 0 114 chr3 153989515 153990345 -73534233 - L1PA3 LINE L1 -3 6152 5418 3679 305 64 62 chr3 153990345 153990915 -73533663 - ERVL LTR ERVL -3127 2637 2070 1800 175 7 7 chr3 153990915 153991218 -73533360 - AluJo SINE Alu -9 303 1 3679 305 64 62 chr3 153991218 153992326 -73532252 - ERVL LTR ERVL -3694 2070 883 648 276 97 26 chr3 153992406 153992634 -73531944 - LTR50 LTR ERVL -548 247 4 401 313 115 53 chr3 153992668 153993119 -73531459 + MLT1K LTR MaLR 17 495 -93 439 299 109 28 chr3 153993685 153993896 -73530682 - MIR SINE MIR -7 255 28 200 263 193 0 chr3 153993936 153994050 -73530528 - MIR SINE MIR -3 259 124 412 298 87 43 chr3 153994425 153994633 -73529945 + L2 LINE L2 2670 2886 -428 1862 157 3 3 chr3 153995208 153995514 -73529064 + AluJb SINE Alu 1 306 -6 467 207 21 57 chr3 153995990 153996130 -73528448 + MIR SINE MIR 84 218 -44 180 0 0 0 chr3 153996423 153996443 -73528135 + (A)n Simple_repeat Simple_repeat 1 20 0 210 167 0 0 chr3 153998878 153998914 -73525664 + (TAA)n Simple_repeat Simple_repeat 1 36 0 380 273 104 19 chr3 153999157 153999311 -73525267 + LTR16C LTR ERVL 224 390 -101 297 214 29 0 chr3 153999447 153999517 -73525061 - MIR SINE MIR -52 210 139 528 314 138 32 chr3 153999517 154000040 -73524538 + L3 LINE CR1 956 1533 -44 291 258 124 90 chr3 154001421 154001582 -73522996 + L2 LINE L2 2838 2992 -280 221 0 35 0 chr3 154001582 154001611 -73522967 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1940 108 37 0 chr3 154001614 154001883 -73522695 - AluSg SINE Alu -28 282 4 291 258 124 90 chr3 154001883 154001950 -73522628 + L2 LINE L2 2993 3078 -194 325 239 86 124 chr3 154001954 154002163 -73522415 + LTR33 LTR ERVL 16 216 -305 789 310 94 11 chr3 154002183 154002544 -73522034 - L2 LINE L2 -546 2768 2378 205 94 62 16 chr3 154002612 154002676 -73521902 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 955 221 33 108 chr3 154002840 154003284 -73521294 - L1M4 LINE L1 -1857 4289 3878 3719 52 0 5 chr3 154003284 154003723 -73520855 - L1PA5 LINE L1 0 6154 5718 955 221 33 108 chr3 154003723 154003734 -73520844 - L1M4 LINE L1 -2268 3878 3868 * 1677 217 5 54 chr3 154003730 154004140 -73520438 - L1MA10 LINE L1 -1 6333 5944 1426 194 23 0 chr3 154004287 154004550 -73520028 - L1MA10 LINE L1 -266 5923 5655 397 229 153 0 chr3 154004543 154004674 -73519904 - L1M4 LINE L1 -2319 3827 3677 * 297 335 57 31 chr3 154004913 154005107 -73519471 - L1MEc LINE L1 -6086 310 112 1106 214 53 1 chr3 154005146 154005402 -73519176 - MER21B LTR ERV1 -374 489 200 2424 285 50 12 chr3 154005417 154006325 -73518253 - HAL1 LINE L1 -1105 1402 461 217 241 0 0 chr3 154008120 154008178 -73516400 + (TA)n Simple_repeat Simple_repeat 2 59 0 1300 263 159 17 chr3 154008181 154008760 -73515818 - Charlie7 DNA MER1_type -1923 689 29 226 288 103 61 chr3 154009110 154009586 -73514992 + HAL1 LINE L1 798 1293 -1214 2963 248 40 80 chr3 154009591 154010499 -73514079 + L1ME1 LINE L1 146 1016 -5527 2690 218 91 26 chr3 154010500 154011216 -73513362 + L1ME1 LINE L1 1537 2310 -4230 2641 171 66 23 chr3 154011216 154011700 -73512878 + MLT1D LTR MaLR 1 505 0 2690 218 91 26 chr3 154011700 154011775 -73512803 + L1ME1 LINE L1 2310 2379 -4161 6697 190 43 25 chr3 154011784 154013149 -73511429 + L1MB5 LINE L1 3831 5211 -969 6056 35 0 0 chr3 154013149 154013825 -73510753 + L1PA4 LINE L1 5477 6152 -3 6697 190 43 25 chr3 154013825 154014121 -73510457 + L1MB5 LINE L1 5211 5500 -680 3274 153 30 9 chr3 154014123 154014680 -73509898 + L1MB5 LINE L1 5587 6155 -19 1785 225 78 13 chr3 154014689 154015137 -73509441 + L1MD2 LINE L1 5879 6355 -4 231 264 46 23 chr3 154016059 154016146 -73508432 - MLT1I LTR MaLR -25 384 296 436 254 8 41 chr3 154016263 154016385 -73508193 - MLT1J2 LTR MaLR -288 162 45 259 244 244 19 chr3 154016507 154016663 -73507915 - MIR SINE MIR 0 262 72 1136 162 17 0 chr3 154017555 154017734 -73506844 + MER5A DNA MER1_type 4 185 -4 220 311 14 14 chr3 154017743 154017817 -73506761 - MIR3 SINE MIR -31 177 104 2664 121 30 43 chr3 154017899 154018337 -73506241 + MSTB1 LTR MaLR 1 432 0 215 227 23 0 chr3 154019217 154019261 -73505317 + L2 LINE L2 3136 3180 -92 2261 105 0 3 chr3 154019438 154019743 -73504835 - AluSx SINE Alu -8 304 1 404 169 26 0 chr3 154021020 154021097 -73503481 - MLT1I LTR MaLR 0 409 331 535 281 6 36 chr3 154021205 154021372 -73503206 - MLT1I LTR MaLR -231 178 17 857 217 11 65 chr3 154022380 154022564 -73502014 - MER45A DNA AcHobo -4 174 1 200 250 44 59 chr3 154022708 154022776 -73501802 - MIR3 SINE MIR -135 73 7 21 57 0 0 chr3 154023051 154023086 -73501492 + AT_rich Low_complexity Low_complexity 1 35 0 6445 228 80 47 chr3 154023295 154023921 -73500657 + L1ME1 LINE L1 3316 3920 -2640 2175 204 48 44 chr3 154023921 154024422 -73500156 + MLT1D LTR MaLR 1 503 -2 6445 228 80 47 chr3 154024422 154026855 -73497723 + L1ME1 LINE L1 3920 6464 -96 355 286 25 34 chr3 154027239 154027358 -73497220 - MIR SINE MIR -138 124 7 195 300 109 36 chr3 154029347 154029457 -73495121 + L2 LINE L2 2873 2990 -282 219 268 0 125 chr3 154029573 154029685 -73494893 + L2 LINE L2 3160 3257 -15 579 252 16 0 chr3 154029868 154029995 -73494583 - MIR SINE MIR -46 216 88 552 357 8 0 chr3 154030430 154030665 -73493913 - MIR SINE MIR -11 251 15 21 0 0 0 chr3 154030680 154030701 -73493877 + AT_rich Low_complexity Low_complexity 1 21 0 354 319 56 19 chr3 154030970 154031130 -73493448 - MIR SINE MIR -75 187 22 186 310 50 115 chr3 154031267 154031467 -73493111 + L2 LINE L2 2906 3092 -180 560 291 101 6 chr3 154031584 154031763 -73492815 + MIR SINE MIR 40 235 -27 304 385 44 0 chr3 154031816 154031951 -73492627 + L2 LINE L2 3126 3266 -6 21 0 0 0 chr3 154033151 154033172 -73491406 + AT_rich Low_complexity Low_complexity 1 21 0 364 316 32 11 chr3 154034026 154034216 -73490362 + L1M4c LINE L1 1247 1440 -4944 556 225 56 6 chr3 154034227 154034387 -73490191 - L1ME2 LINE L1 -39 6125 5958 824 320 88 19 chr3 154035293 154035731 -73488847 - L2 LINE L2 -247 3066 2594 604 269 178 26 chr3 154035731 154036114 -73488464 + MLT1J1 LTR MaLR 1 441 -5 670 220 87 37 chr3 154036197 154036415 -73488163 - MIR SINE MIR -32 230 2 340 307 51 88 chr3 154037589 154037885 -73486693 + MLT1I LTR MaLR 108 392 -17 234 91 0 0 chr3 154037954 154037987 -73486591 + (TG)n Simple_repeat Simple_repeat 2 34 0 269 324 19 9 chr3 154038974 154039079 -73485499 - MIR3 SINE MIR -24 184 79 386 313 0 11 chr3 154039172 154039354 -73485224 + (TG)n Simple_repeat Simple_repeat 1 180 0 206 351 69 30 chr3 154041574 154041705 -73482873 + L2 LINE L2 3137 3272 0 189 284 266 18 chr3 154042454 154042563 -73482015 + L2 LINE L2 684 819 -2495 1460 333 109 20 chr3 154042607 154043802 -73480776 + L2 LINE L2 934 2234 -1080 2120 171 45 5 chr3 154044058 154044438 -73480140 + MSTD LTR MaLR 2 396 0 352 255 108 113 chr3 154044455 154044686 -73479892 + MIR SINE MIR 4 233 -29 264 397 15 15 chr3 154046283 154046487 -73478091 + L2 LINE L2 2144 2347 -967 527 311 114 36 chr3 154046511 154046932 -73477646 + L2 LINE L2 2486 2939 -375 690 319 79 33 chr3 154047133 154047525 -73477053 + L2 LINE L2 2861 3270 -2 234 350 130 22 chr3 154047577 154047945 -73476633 + L2 LINE L2 2366 2773 -541 291 269 25 50 chr3 154047949 154048109 -73476469 + L1ME3A LINE L1 5793 5948 -222 26 50 0 0 chr3 154048761 154048801 -73475777 + AT_rich Low_complexity Low_complexity 1 40 0 588 252 0 0 chr3 154049553 154049688 -73474890 - MIR SINE MIR -8 254 120 23 33 0 0 chr3 154050145 154050175 -73474403 + AT_rich Low_complexity Low_complexity 1 30 0 1599 225 44 0 chr3 154050179 154050539 -73474039 - L1MC4 LINE L1 -481 7561 7186 688 161 8 0 chr3 154050571 154050689 -73473889 + L1MC4 LINE L1 7914 8032 -10 288 265 51 10 chr3 154050689 154050787 -73473791 - LTR67 LTR ERVL -57 500 399 642 274 61 15 chr3 154051394 154051591 -73472987 + MIR SINE MIR 40 245 -17 1379 281 77 23 chr3 154051623 154052050 -73472528 + LTR16A LTR ERVL 1 450 0 190 372 80 29 chr3 154052204 154052341 -73472237 + L2 LINE L2 2969 3112 -160 464 260 101 41 chr3 154052408 154052833 -73471745 + LTR33A LTR ERVL 18 505 -18 1675 165 36 7 chr3 154053195 154053498 -73471080 - AluJb SINE Alu 0 312 1 525 135 0 0 chr3 154054306 154054395 -73470183 + (GGAA)n Simple_repeat Simple_repeat 2 90 0 198 143 0 0 chr3 154055017 154055052 -73469526 + (TC)n Simple_repeat Simple_repeat 1 35 0 274 284 0 0 chr3 154055566 154055640 -73468938 + MIR3 SINE MIR 113 186 -22 181 338 13 13 chr3 154055818 154055895 -73468683 - L2 LINE L2 -497 2817 2741 3947 38 0 0 chr3 154057350 154057884 -73466694 - L1P5 LINE L1 -686 5465 4927 4167 49 0 2 chr3 154057884 154058364 -73466214 + L1PA4 LINE L1 5669 6155 0 2293 103 3 3 chr3 154058388 154058729 -73465849 + L1P LINE L1 5026 5366 -780 25 65 0 0 chr3 154058847 154058893 -73465685 + AT_rich Low_complexity Low_complexity 1 46 0 267 304 65 23 chr3 154059388 154059694 -73464884 + L1M4 LINE L1 2149 2467 -3679 571 103 0 0 chr3 154059747 154059825 -73464753 - Alu SINE Alu -12 297 220 262 167 0 0 chr3 154060179 154060221 -73464357 - L1M3 LINE L1 -443 5725 5684 * 1474 181 46 3 chr3 154060218 154060522 -73464056 + L1M3 LINE L1 5387 5703 -465 365 232 28 21 chr3 154060697 154060839 -73463739 + L1M4 LINE L1 2856 2998 -3148 1298 186 35 22 chr3 154060917 154061228 -73463350 + MER58D DNA MER1_type 47 361 -25 311 309 0 42 chr3 154061610 154061775 -73462803 + G-rich Low_complexity Low_complexity 2 159 0 301 310 32 11 chr3 154062456 154062643 -73461935 + L1M4c LINE L1 1250 1440 -4944 530 210 41 11 chr3 154062654 154062814 -73461764 - L1ME2 LINE L1 -43 6127 5958 2169 115 0 0 chr3 154064127 154064413 -73460165 + AluSx SINE Alu 1 286 -26 1279 95 18 0 chr3 154065174 154065343 -73459235 - AluSg/x SINE Alu -7 305 134 2106 114 0 13 chr3 154065343 154065649 -73458929 - AluSx SINE Alu -10 302 1 251 248 159 0 chr3 154065851 154065964 -73458614 - L1M4 LINE L1 -1332 4814 4684 962 266 35 12 chr3 154065988 154066416 -73458162 + L1M4c LINE L1 1528 1965 -4598 1149 203 28 72 chr3 154066429 154066918 -73457660 + MLT1C LTR MaLR 5 467 0 427 229 48 95 chr3 154066920 154066968 -73457610 + L1M4c LINE L1 1972 2021 -4542 1923 147 7 0 chr3 154066968 154067254 -73457324 + AluSx SINE Alu 7 294 -18 427 229 48 95 chr3 154067254 154067436 -73457142 + L1M4c LINE L1 2021 2191 -4372 33 66 0 0 chr3 154067460 154067521 -73457057 + AT_rich Low_complexity Low_complexity 1 61 0 293 271 0 0 chr3 154067849 154067934 -73456644 - HAL1 LINE L1 -943 1564 1480 261 299 46 49 chr3 154067965 154068269 -73456309 - L1MEd LINE L1 -4920 1199 897 249 98 0 0 chr3 154070739 154070780 -73453798 + (TTCA)n Simple_repeat Simple_repeat 1 41 0 434 252 9 28 chr3 154070780 154070887 -73453691 - L2 LINE L2 -13 3300 3196 403 315 54 87 chr3 154071451 154071692 -73452886 + L2 LINE L2 265 497 -2817 254 279 16 109 chr3 154072135 154072318 -73452260 + L2 LINE L2 2701 2866 -448 252 233 163 47 chr3 154072590 154072719 -73451859 + L2 LINE L2 3169 3312 -1 264 364 13 0 chr3 154072767 154072844 -73451734 + MIR SINE MIR 28 105 -103 25106 43 2 0 chr3 154073096 154077111 -73447467 - L1PA5 LINE L1 -4 6150 2133 6645 15 0 6 chr3 154077172 154077973 -73446605 - L1PA2 LINE L1 -1 6154 5359 * 8178 31 0 2 chr3 154077961 154079007 -73445571 + L1PA2 LINE L1 4313 5356 -790 7603 66 2 10 chr3 154079004 154080080 -73444498 - L1PA5 LINE L1 -3999 2147 1081 * 729 88 0 0 chr3 154080058 154080160 -73444418 - L1PA5 LINE L1 -6044 102 1 * 184 217 0 22 chr3 154080204 154080250 -73444328 + MIR SINE MIR 159 203 -59 315 302 28 0 chr3 154081009 154081115 -73443463 + MIR SINE MIR 28 136 -126 315 307 75 82 chr3 154081218 154081655 -73442923 - L2 LINE L2 -1 3312 2879 213 287 170 11 chr3 154081762 154081856 -73442722 - L2 LINE L2 -665 2649 2541 356 213 0 0 chr3 154082032 154082255 -73442323 + (CA)n Simple_repeat Simple_repeat 1 223 0 576 278 18 24 chr3 154082256 154082425 -73442153 - MIR SINE MIR -84 178 11 2684 90 3 0 chr3 154082485 154082839 -73441739 - THE1A LTR MaLR 0 355 1 11955 88 3 1 chr3 154082843 154084415 -73440163 - THE1A-int LTR MaLR -4 1576 1 2726 85 6 0 chr3 154084415 154084768 -73439810 - THE1A LTR MaLR 0 355 1 26 0 0 0 chr3 154084813 154084839 -73439739 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr3 154085061 154085090 -73439488 + AT_rich Low_complexity Low_complexity 1 29 0 29 0 0 0 chr3 154085514 154085543 -73439035 + AT_rich Low_complexity Low_complexity 1 29 0 545 286 57 86 chr3 154085723 154086598 -73437980 + L1M4 LINE L1 2384 3233 -2913 318 272 88 16 chr3 154087272 154087397 -73437181 + MER5A DNA MER1_type 55 188 -1 244 311 42 21 chr3 154087618 154087901 -73436677 + L1M4 LINE L1 4271 4559 -1587 312 325 61 18 chr3 154087990 154088104 -73436474 + L1M4 LINE L1 4672 4790 -1356 1969 297 46 16 chr3 154088148 154088885 -73435693 + L2 LINE L2 2061 2819 -495 3895 217 23 6 chr3 154088893 154089798 -73434780 + MER63C DNA MER1_type 2 922 -8 840 277 148 17 chr3 154089809 154090221 -73434357 + L2 LINE L2 2844 3309 -4 245 286 24 12 chr3 154090588 154090672 -73433906 + L1P5 LINE L1 5522 5606 -548 1992 183 95 0 chr3 154090683 154091072 -73433506 + MSTB LTR MaLR 1 426 0 194 204 0 19 chr3 154091184 154091238 -73433340 + GA-rich Low_complexity Low_complexity 2 54 0 554 287 99 20 chr3 154091238 154091590 -73432988 + L1ME4a LINE L1 5738 6117 -4 611 315 138 29 chr3 154094864 154095249 -73429329 - LTR16A LTR ERVL -31 426 1 23 33 0 0 chr3 154095365 154095395 -73429183 + AT_rich Low_complexity Low_complexity 1 30 0 415 206 72 0 chr3 154095439 154095536 -73429042 + FRAM SINE Alu 71 174 -2 485 266 71 61 chr3 154096055 154096722 -73427856 + L1MEd LINE L1 694 1414 -4863 1566 202 58 58 chr3 154096881 154096915 -73427663 - L1M4 LINE L1 -1863 4283 4250 243 61 0 0 chr3 154096915 154096948 -73427630 + (TTTG)n Simple_repeat Simple_repeat 1 33 0 1566 202 58 58 chr3 154096948 154097019 -73427559 - L1M4 LINE L1 -1896 4250 4180 222 37 0 0 chr3 154097019 154097046 -73427532 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1566 202 58 58 chr3 154097046 154097100 -73427478 - L1M4 LINE L1 -1966 4180 4127 1618 147 10 65 chr3 154097100 154097407 -73427171 + AluJb SINE Alu 1 290 -22 1566 202 58 58 chr3 154097407 154097760 -73426818 - L1M4 LINE L1 -2018 4128 3769 4695 129 27 10 chr3 154097760 154098575 -73426003 - Tigger3b DNA MER2_type 0 1231 403 27 29 0 0 chr3 154098594 154098628 -73425950 + AT_rich Low_complexity Low_complexity 1 34 0 294 125 21 0 chr3 154098652 154098700 -73425878 - Tigger3b DNA MER2_type -845 386 338 327 146 0 0 chr3 154098700 154098755 -73425823 + (TA)n Simple_repeat Simple_repeat 2 56 0 240 138 0 17 chr3 154098763 154098821 -73425757 - Tigger3b DNA MER2_type -901 330 274 * 321 26 0 0 chr3 154098819 154098858 -73425720 - Tigger3b DNA MER2_type -1129 102 64 289 250 19 0 chr3 154098865 154098973 -73425605 + L1M4 LINE L1 3141 3250 -2896 303 346 75 23 chr3 154098996 154099210 -73425368 + L1M4 LINE L1 3605 3829 -2317 3833 92 28 0 chr3 154099497 154100040 -73424538 - L1PA10 LINE L1 -5 6163 5606 314 182 45 0 chr3 154100794 154100860 -73423718 - L1MD3 LINE L1 -802 7193 7125 22 0 0 0 chr3 154100862 154100884 -73423694 + AT_rich Low_complexity Low_complexity 1 22 0 986 338 101 12 chr3 154100926 154101758 -73422820 + L1MEd LINE L1 3 908 -5211 * 4295 230 41 14 chr3 154101755 154102403 -73422175 + L1MB8 LINE L1 2451 3080 -3066 2303 161 59 5 chr3 154102403 154102807 -73421771 - MSTB LTR MaLR 0 426 1 4295 230 41 14 chr3 154102807 154103556 -73421022 + L1MB8 LINE L1 3080 3885 -2261 3114 207 46 15 chr3 154103546 154104317 -73420261 + L1MB8 LINE L1 5353 6150 -28 * 2639 138 36 2 chr3 154104317 154104731 -73419847 + MSTA LTR MaLR 1 428 0 3114 207 46 15 chr3 154104731 154104748 -73419830 + L1MB8 LINE L1 6150 6165 -13 1852 150 22 64 chr3 154104802 154104992 -73419586 + MLT1B LTR MaLR 1 167 -223 2409 48 0 0 chr3 154104992 154105285 -73419293 + L1PA5 LINE L1 5862 6154 0 1852 150 22 64 chr3 154105285 154105501 -73419077 + MLT1B LTR MaLR 167 390 0 272 245 64 48 chr3 154105501 154105689 -73418889 + L1MEd LINE L1 1059 1249 -4870 1074 257 23 12 chr3 154105723 154106065 -73418513 + L1M4 LINE L1 3896 4241 -1905 366 267 92 42 chr3 154106073 154106290 -73418288 + HAL1b LINE L1 703 930 -418 312 316 96 55 chr3 154106406 154106865 -73417713 + L1PB4 LINE L1 253 730 -6119 3685 253 28 45 chr3 154106952 154108838 -73415740 + L1PB4 LINE L1 751 2798 -4052 * 13514 184 25 10 chr3 154108826 154112602 -73411976 + L1PB4 LINE L1 3020 6847 -12 3282 30 0 0 chr3 154112644 154113008 -73411570 - L1PA3 LINE L1 -1 6154 5791 17842 32 0 0 chr3 154113010 154115632 -73408946 + L1PA3 LINE L1 3300 5920 -235 6118 54 0 0 chr3 154115610 154116375 -73408203 + L1P LINE L1 1090 1854 -4292 * 5721 63 0 0 chr3 154116377 154117089 -73407489 - L1P LINE L1 -5434 712 1 315 0 0 0 chr3 154117843 154117878 -73406700 + (CA)n Simple_repeat Simple_repeat 2 36 0 841 184 0 22 chr3 154118350 154118486 -73406092 + FLAM_C SINE Alu 1 133 0 1769 262 105 65 chr3 154119780 154120352 -73404226 + MLT1H1 LTR MaLR 1 555 0 2590 47 0 0 chr3 154120954 154121251 -73403327 + AluY SINE Alu 1 297 -14 825 232 38 5 chr3 154121780 154121965 -73402613 + MER63A DNA MER1_type 17 207 -3 470 262 50 14 chr3 154122972 154123113 -73401465 + L2 LINE L2 3168 3313 0 531 267 111 6 chr3 154123993 154124173 -73400405 + MIR SINE MIR 21 219 -43 203 179 0 0 chr3 154124179 154124218 -73400360 + (TTA)n Simple_repeat Simple_repeat 3 41 0 1944 110 0 4 chr3 154124988 154125251 -73399327 - AluSq SINE Alu -12 301 40 235 311 184 42 chr3 154125468 154125658 -73398920 - L2 LINE L2 0 3272 3056 1064 301 88 3 chr3 154125671 154126057 -73398521 - LTR16A LTR ERVL -11 439 21 261 319 35 0 chr3 154126069 154126185 -73398393 - L2 LINE L2 -206 3066 2947 232 227 0 0 chr3 154126827 154126871 -73397707 + CT-rich Low_complexity Low_complexity 1 44 0 380 253 0 0 chr3 154127454 154127533 -73397045 + MER103 DNA DNA 43 121 -45 1062 298 136 33 chr3 154127869 154128390 -73396188 - MLT1K LTR MaLR 0 588 14 491 274 177 13 chr3 154128851 154129088 -73395490 - L3 LINE CR1 -18 1559 1284 489 331 101 0 chr3 154129492 154129670 -73394908 - MER91A DNA MER1_type 0 196 1 728 267 51 17 chr3 154131097 154131331 -73393247 - MIR SINE MIR 0 262 22 1845 163 148 6 chr3 154132403 154132817 -73391761 - MLT1D LTR MaLR 0 505 1 617 303 95 5 chr3 154134824 154135045 -73389533 + MIR SINE MIR 10 250 -12 211 321 0 0 chr3 154135276 154135329 -73389249 + polypyrimidine Low_complexity Low_complexity 2 54 0 315 230 18 124 chr3 154135494 154135607 -73388971 + MER5A DNA MER1_type 9 109 -80 769 249 24 28 chr3 154137221 154137434 -73387144 + MIR SINE MIR 8 219 -43 231 241 24 72 chr3 154137635 154137718 -73386860 - L2 LINE L2 -16 3256 3178 393 273 0 15 chr3 154137890 154138022 -73386556 - L1ME1 LINE L1 -5 6161 6032 232 222 0 0 chr3 154138049 154138094 -73386484 + L1ME LINE L1 5862 5906 -215 189 74 0 0 chr3 154138109 154138136 -73386442 + (TG)n Simple_repeat Simple_repeat 2 28 0 941 334 119 22 chr3 154138285 154139057 -73385521 - L2 LINE L2 -237 3035 2184 590 231 13 58 chr3 154139057 154139213 -73385365 - MLT1G LTR MaLR 0 590 442 306 295 50 68 chr3 154140135 154140457 -73384121 + L1ME3A LINE L1 547 862 -5208 755 304 70 43 chr3 154140464 154140843 -73383735 + L1ME3A LINE L1 895 1262 -4999 1237 191 44 132 chr3 154140843 154141252 -73383326 + MLT1A2 LTR MaLR 1 373 -1 755 304 70 43 chr3 154141252 154141645 -73382933 + L1ME3A LINE L1 1262 1688 -4573 1237 305 45 10 chr3 154141702 154142213 -73382365 + L1ME3A LINE L1 4550 5078 -1002 8261 83 1 0 chr3 154142265 154143354 -73381224 + L1P LINE L1 3637 4726 -1420 1435 265 37 0 chr3 154143368 154143742 -73380836 + L1ME3A LINE L1 5231 5618 -486 423 231 75 44 chr3 154143736 154143896 -73380682 + L1ME3A LINE L1 5932 6096 -8 * 217 286 143 20 chr3 154145309 154145407 -73379171 + L2 LINE L2 3203 3312 -1 231 358 147 16 chr3 154146070 154146640 -73377938 - L2 LINE L2 -342 2972 2328 1663 226 71 27 chr3 154146887 154147365 -73377213 + MLT1D LTR MaLR 1 499 -6 228 349 15 0 chr3 154147929 154147995 -73376583 + L2 LINE L2 3190 3256 -16 181 238 24 0 chr3 154148031 154148073 -73376505 + MER5B DNA MER1_type 1 43 -135 * 491 257 0 18 chr3 154148065 154148178 -73376400 - MER5A DNA MER1_type -75 114 4 347 257 59 0 chr3 154149084 154149185 -73375393 - MLT1K LTR MaLR -6 582 476 213 283 0 0 chr3 154150370 154150423 -73374155 - L2 LINE L2 -13 3300 3248 262 312 117 19 chr3 154150436 154150590 -73373988 - MIR3 SINE MIR -5 203 35 556 288 206 10 chr3 154151520 154151812 -73372766 - L2 LINE L2 -3 3269 2921 361 224 164 48 chr3 154151853 154152018 -73372560 - MIR SINE MIR -8 254 71 1490 113 55 0 chr3 154152020 154152258 -73372320 - L1MA9 LINE L1 0 6376 6126 204 257 0 0 chr3 154152262 154152332 -73372246 + (CATATA)n Simple_repeat Simple_repeat 4 73 0 2532 139 5 0 chr3 154152355 154152750 -73371828 - L1MA9 LINE L1 -585 5791 5395 1877 152 58 79 chr3 154152750 154153306 -73371272 - MLT2A2 LTR ERVL 0 554 1 195 100 0 0 chr3 154153339 154153369 -73371209 + (TTTTTG)n Simple_repeat Simple_repeat 5 34 0 635 129 122 20 chr3 154153388 154153535 -73371043 - L1MA9 LINE L1 -836 5374 5213 800 204 19 38 chr3 154153535 154153692 -73370886 + MER21B LTR ERV1 1 154 -709 * 1088 179 72 76 chr3 154153674 154153937 -73370641 + MER21B LTR ERV1 550 811 -52 9566 176 15 8 chr3 154153999 154155818 -73368760 - L1MA9 LINE L1 -995 5215 3385 4410 243 65 39 chr3 154155805 154156967 -73367611 - L1MA9 LINE L1 -4949 1192 1 * 688 215 5 112 chr3 154156998 154157101 -73367477 - MER63A DNA MER1_type -1483 205 137 2392 104 0 3 chr3 154157101 154157410 -73367168 + AluSc SINE Alu 1 308 -1 688 215 5 112 chr3 154157410 154157529 -73367049 - MER63A DNA MER1_type -1551 137 7 1174 236 112 40 chr3 154157959 154158386 -73366192 - MLT1C LTR MaLR -4 463 6 1454 208 57 5 chr3 154158388 154158758 -73365820 - Zaphod DNA AcHobo -48 3983 3595 1904 210 109 72 chr3 154158788 154158845 -73365733 - Zaphod DNA AcHobo -3068 963 910 2078 124 0 23 chr3 154158845 154159152 -73365426 + AluSq SINE Alu 2 301 -12 1904 210 109 72 chr3 154159152 154159436 -73365142 - Zaphod DNA AcHobo -3121 910 638 5005 144 1 3 chr3 154159436 154160206 -73364372 + L1MA3 LINE L1 5533 6301 -4 1904 210 109 72 chr3 154160206 154160760 -73363818 - Zaphod DNA AcHobo -3393 638 21 2612 27 0 3 chr3 154161363 154161658 -73362920 + AluY SINE Alu 1 294 -17 229 263 18 0 chr3 154161771 154161828 -73362750 + Charlie8 DNA MER1_type 2341 2398 -19 462 299 115 14 chr3 154161834 154162051 -73362527 + MIR SINE MIR 21 259 -3 23 78 0 0 chr3 154162625 154162676 -73361902 + AT_rich Low_complexity Low_complexity 1 51 0 196 359 16 0 chr3 154163014 154163060 -73361518 + L3 LINE CR1 461 507 -1070 415 288 184 17 chr3 154163060 154163272 -73361306 + MIR SINE MIR 4 253 -9 443 269 167 18 chr3 154163293 154163520 -73361058 + L3 LINE CR1 558 818 -759 788 234 78 16 chr3 154163537 154163729 -73360849 + MER63A DNA MER1_type 7 210 0 415 291 38 89 chr3 154163869 154164082 -73360496 + MIR SINE MIR 13 214 -48 2024 148 0 10 chr3 154164084 154164389 -73360189 + AluJb SINE Alu 1 302 -10 793 234 189 60 chr3 154164474 154164940 -73359638 - MLT1H LTR MaLR -10 539 14 389 262 79 52 chr3 154164955 154165193 -73359385 + L1M1 LINE L1 5337 5580 -618 25 65 0 0 chr3 154165272 154165318 -73359260 + AT_rich Low_complexity Low_complexity 1 46 0 2199 95 7 7 chr3 154165469 154165857 -73358721 + L1MA1 LINE L1 5999 6386 0 379 251 166 18 chr3 154166012 154166175 -73358403 + L3 LINE CR1 946 1132 -445 279 297 21 48 chr3 154166174 154166319 -73358259 - L2 LINE L2 0 3313 3173 * 256 156 0 0 chr3 154166319 154166364 -73358214 + Ricksha DNA DNA 40 84 -3162 * 6343 130 51 10 chr3 154166363 154167405 -73357173 + Ricksha DNA DNA 2155 3239 -7 236 313 21 0 chr3 154168235 154168331 -73356247 - L1ME4a LINE L1 -90 6031 5934 626 292 75 26 chr3 154168455 154168722 -73355856 - L2 LINE L2 0 3313 3034 1411 224 86 63 chr3 154168727 154169217 -73355361 - MLT1F1 LTR MaLR 0 567 67 532 273 74 28 chr3 154169273 154169546 -73355032 - L2 LINE L2 -283 3030 2750 467 304 140 33 chr3 154169546 154169911 -73354667 - L1ME4a LINE L1 -2004 5804 5401 362 291 63 53 chr3 154170283 154170472 -73354106 + MIR SINE MIR 61 251 -11 211 360 50 30 chr3 154170528 154170628 -73353950 + L2 LINE L2 3158 3259 -13 194 0 0 37 chr3 154170668 154170695 -73353883 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 397 245 145 72 chr3 154171089 154171407 -73353171 + MER102b DNA MER1_type 1 341 0 579 257 78 52 chr3 154171901 154172223 -73352355 - LTR16A LTR ERVL -22 428 27 197 274 98 72 chr3 154173527 154173680 -73350898 - MIR SINE MIR -71 191 35 32 26 0 0 chr3 154173743 154173782 -73350796 + AT_rich Low_complexity Low_complexity 1 39 0 966 345 172 25 chr3 154173953 154174849 -73349729 + L3 LINE CR1 241 1297 -280 2403 82 3 0 chr3 154174849 154175143 -73349435 - AluY SINE Alu -16 295 1 966 345 172 25 chr3 154175143 154175236 -73349342 + L3 LINE CR1 1297 1375 -202 500 294 53 11 chr3 154175880 154176120 -73348458 - MIR SINE MIR -12 250 1 244 321 24 36 chr3 154176607 154176691 -73347887 + MIR SINE MIR 2 84 -178 615 297 93 15 chr3 154177212 154177471 -73347107 - L2 LINE L2 -3 3310 3032 238 286 99 68 chr3 154177611 154177772 -73346806 + MLT1J LTR MaLR 151 316 -195 805 324 107 8 chr3 154177948 154178331 -73346247 - L2 LINE L2 -340 2974 2554 517 273 40 20 chr3 154178540 154178690 -73345888 - MIR SINE MIR -75 187 35 419 208 139 0 chr3 154178905 154179006 -73345572 - MIR SINE MIR -110 152 38 633 256 181 23 chr3 154179307 154179573 -73345005 + L2 LINE L2 3004 3311 -2 312 285 54 54 chr3 154182764 154182894 -73341684 - MIR SINE MIR -60 148 19 545 301 24 84 chr3 154183018 154183350 -73341228 + L2 LINE L2 2885 3196 -76 265 128 21 0 chr3 154183514 154183561 -73341017 + L2 LINE L2 3265 3312 -1 226 289 0 53 chr3 154183883 154184035 -73340543 + L1ME2 LINE L1 5255 5398 -2410 459 242 40 54 chr3 154185042 154185191 -73339387 + L1ME2 LINE L1 6018 6164 0 2766 238 27 24 chr3 154185303 154186042 -73338536 + L1ME1 LINE L1 45 785 -5611 * 10250 221 52 32 chr3 154186036 154188452 -73336126 + L1ME1 LINE L1 2452 4967 -1268 342 0 0 0 chr3 154188452 154188490 -73336088 + (TA)n Simple_repeat Simple_repeat 2 39 0 10250 221 52 32 chr3 154188490 154189781 -73334797 + L1ME1 LINE L1 4967 6230 -5 1051 88 2 98 chr3 154189896 154190097 -73334481 + HUERS-P1 LTR ERV1 5794 5951 -312 1703 41 0 0 chr3 154190108 154190303 -73334275 - L1PA4 LINE L1 -3 6152 5958 1024 9 0 0 chr3 154190303 154190419 -73334159 + L1PA4 LINE L1 5854 5969 -186 1996 159 3 6 chr3 154190419 154190745 -73333833 + HUERS-P1 LTR ERV1 5939 6263 0 3708 112 47 21 chr3 154190745 154191316 -73333262 + LTR8 LTR ERV1 1 586 -105 186 43 0 0 chr3 154191316 154191339 -73333239 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 279 247 37 68 chr3 154191765 154191955 -73332623 - Charlie7 DNA MER1_type 0 2612 2429 274 250 104 10 chr3 154191938 154192034 -73332544 - Charlie7 DNA MER1_type -2507 105 1 * 503 267 187 14 chr3 154192124 154192472 -73332106 + L1ME4a LINE L1 5711 6118 -3 2369 81 3 7 chr3 154193033 154193343 -73331235 + AluSc SINE Alu 1 309 0 258 303 10 20 chr3 154194697 154194796 -73329782 - MIR3 SINE MIR -2 206 109 25 0 0 0 chr3 154196102 154196127 -73328451 + AT_rich Low_complexity Low_complexity 1 25 0 1119 249 0 15 chr3 154197181 154197442 -73327136 + MIR SINE MIR 6 262 0 21 82 0 0 chr3 154197722 154197771 -73326807 + AT_rich Low_complexity Low_complexity 1 49 0 2268 110 0 0 chr3 154198288 154198580 -73325998 - AluSg SINE Alu -18 292 1 409 328 76 22 chr3 154199893 154200293 -73324285 - LTR16B LTR ERVL -12 438 1 818 254 35 0 chr3 154200916 154201117 -73323461 - MIR SINE MIR -14 248 41 260 275 100 0 chr3 154201701 154201781 -73322797 - L2 LINE L2 0 3272 3185 210 310 0 62 chr3 154201913 154202026 -73322552 + L2 LINE L2 2955 3060 -212 313 260 13 0 chr3 154202045 154202122 -73322456 + CT-rich Low_complexity Low_complexity 3 80 0 257 318 0 11 chr3 154202133 154202221 -73322357 - MIR SINE MIR -13 249 163 476 269 46 23 chr3 154202770 154202963 -73321615 + MIR SINE MIR 5 200 -61 727 236 156 27 chr3 154203055 154203280 -73321298 + MIR SINE MIR 5 258 -4 180 250 33 65 chr3 154203399 154203491 -73321087 - L2 LINE L2 -220 3052 2964 492 296 27 20 chr3 154203573 154203730 -73320848 - MER5B DNA MER1_type -4 174 19 849 183 7 0 chr3 154203742 154203884 -73320694 - MER5A DNA MER1_type 0 189 47 1200 169 96 32 chr3 154203884 154204133 -73320445 - MSTA LTR MaLR 0 428 164 766 262 160 17 chr3 154205365 154205777 -73318801 + MLT1K LTR MaLR 2 472 -4 359 287 103 0 chr3 154206215 154206351 -73318227 - MIR SINE MIR -7 255 106 752 288 92 52 chr3 154206362 154206785 -73317793 - MLT1K LTR MaLR -87 501 62 235 210 62 62 chr3 154207095 154207176 -73317402 - MER5A DNA MER1_type 0 189 109 579 249 73 17 chr3 154209359 154209536 -73315042 + MIR SINE MIR 5 191 -71 1937 162 0 7 chr3 154209790 154210093 -73314485 + AluJo SINE Alu 1 301 -11 25 31 0 0 chr3 154210401 154210433 -73314145 + AT_rich Low_complexity Low_complexity 1 32 0 272 143 18 0 chr3 154211295 154211351 -73313227 + CT-rich Low_complexity Low_complexity 1 57 0 465 188 82 0 chr3 154212632 154212717 -73311861 + MLT1A2 LTR MaLR 1 92 -282 2320 213 46 106 chr3 154212719 154213744 -73310834 - L1MC5 LINE L1 -334 7627 6665 9215 182 9 13 chr3 154213746 154216143 -73308435 + L1PA14 LINE L1 3767 6161 0 3024 140 26 41 chr3 154216180 154216716 -73307862 + L1MB3 LINE L1 5590 6117 -66 265 93 0 0 chr3 154216807 154216850 -73307728 + L1MB4 LINE L1 6138 6180 0 315 259 102 86 chr3 154217485 154217682 -73306896 + MIR SINE MIR 33 232 -30 964 350 83 21 chr3 154218415 154218905 -73305673 + L3 LINE CR1 1022 1547 -30 2033 224 0 6 chr3 154218905 154219271 -73305307 + MLT1A1 LTR MaLR 1 364 -1 964 350 83 21 chr3 154219271 154219300 -73305278 + L3 LINE CR1 1547 1573 -4 264 268 137 46 chr3 154219325 154219478 -73305100 + MIR SINE MIR 2 168 -94 1762 221 68 14 chr3 154220941 154221384 -73303194 - MLT1C LTR MaLR 0 467 1 244 403 13 0 chr3 154222107 154222261 -73302317 + L2 LINE L2 2553 2708 -606 255 287 22 81 chr3 154222641 154222777 -73301801 + MIR SINE MIR 20 147 -115 1837 170 0 38 chr3 154224550 154224868 -73299710 + AluJb SINE Alu 1 306 -6 320 339 154 12 chr3 154224882 154225298 -73299280 + L2 LINE L2 1813 2287 -1027 1858 253 79 13 chr3 154225554 154226151 -73298427 + L1ME3 LINE L1 4754 5389 -757 1995 125 3 10 chr3 154226177 154226503 -73298075 - AluSx SINE Alu 0 312 1 1703 213 25 11 chr3 154226503 154226856 -73297722 - MLT1A1 LTR MaLR -7 358 1 2882 262 31 3 chr3 154226860 154227608 -73296970 + L1ME3 LINE L1 5394 6162 0 1955 142 137 38 chr3 154229649 154230071 -73294507 + MLT2B1 LTR ERVL 1 464 -56 400 352 176 13 chr3 154230309 154230690 -73293888 - L3 LINE CR1 -732 845 403 227 381 0 3 chr3 154230987 154231111 -73293467 - MIR SINE MIR -53 155 32 265 355 59 20 chr3 154232160 154232312 -73292266 - MIR SINE MIR -79 183 26 191 293 123 28 chr3 154232580 154232686 -73291892 + L3b LINE CR1 1277 1392 -191 1951 206 44 11 chr3 154233940 154234373 -73290205 + MLT1C LTR MaLR 18 464 -3 728 178 78 89 chr3 154234648 154234771 -73289807 - MER5A DNA MER1_type 0 189 67 2390 94 0 0 chr3 154234771 154235069 -73289509 - AluY SINE Alu -13 298 1 728 178 78 89 chr3 154235069 154235136 -73289442 - MER5A DNA MER1_type -122 67 1 723 360 68 47 chr3 154237185 154237532 -73287046 - HERV16 LTR ERVL -3554 1442 1104 742 193 174 0 chr3 154237532 154237693 -73286885 - MER5A DNA MER1_type 0 189 1 723 360 68 47 chr3 154237693 154238758 -73285820 - HERV16 LTR ERVL -3892 1104 1 197 241 98 62 chr3 154239287 154239399 -73285179 - L2 LINE L2 -67 3246 3131 224 260 115 21 chr3 154239543 154239639 -73284939 + MIR SINE MIR 56 160 -102 751 183 68 161 chr3 154239663 154240061 -73284517 - L1ME1 LINE L1 -4 6162 5802 2997 249 89 37 chr3 154240073 154241065 -73283513 - L1MEc LINE L1 -5284 1112 70 210 297 27 0 chr3 154241098 154241172 -73283406 + MIR SINE MIR 172 247 -15 283 298 21 11 chr3 154241852 154241946 -73282632 + L2 LINE L2 3178 3272 0 2273 111 0 3 chr3 154243144 154243442 -73281136 - AluSq SINE Alu -16 297 1 479 309 52 36 chr3 154244043 154244295 -73280283 + MIR SINE MIR 5 260 -2 429 273 134 24 chr3 154244292 154244501 -73280077 + MIR SINE MIR 18 249 -13 * 4452 188 51 14 chr3 154244724 154245670 -73278908 - L1MC2 LINE L1 0 7777 6137 7347 215 39 11 chr3 154245770 154248568 -73276010 - L1MC3 LINE L1 -743 5821 3824 1505 168 80 122 chr3 154248568 154248979 -73275599 + MSTD LTR MaLR 3 396 0 7347 215 39 11 chr3 154248979 154249103 -73275475 - L1MC3 LINE L1 -2740 3824 3705 2874 210 83 11 chr3 154249090 154250209 -73274369 - L1MC3 LINE L1 -4765 1799 570 * 1321 305 36 23 chr3 154250393 154250871 -73273707 - L1MC3 LINE L1 -5561 484 1 23 33 0 0 chr3 154251098 154251128 -73273450 + AT_rich Low_complexity Low_complexity 1 30 0 192 319 53 32 chr3 154252552 154252646 -73271932 + L2 LINE L2 3137 3232 -40 266 328 25 42 chr3 154254105 154254224 -73270354 + MIR SINE MIR 17 133 -75 285 268 49 12 chr3 154254316 154254398 -73270180 + MIR3 SINE MIR 104 188 -20 464 211 18 44 chr3 154254458 154254572 -73270006 + MIR SINE MIR 93 203 -59 1435 330 142 18 chr3 154254647 154255628 -73268950 + L2 LINE L2 1875 2976 -338 1441 175 0 15 chr3 154255810 154256079 -73268499 - L1P LINE L1 -929 5217 4953 1213 99 29 0 chr3 154256077 154256248 -73268330 + L1P LINE L1 4773 4948 -1198 * 240 35 0 0 chr3 154257411 154257440 -73267138 + (T)n Simple_repeat Simple_repeat 1 29 0 2767 120 0 3 chr3 154257440 154257832 -73266746 - LTR9B LTR ERV1 -84 560 170 26899 32 16 2 chr3 154257833 154263863 -73260715 - L1PA2 LINE L1 0 6155 3 216 0 0 0 chr3 154264755 154264779 -73259799 + (TG)n Simple_repeat Simple_repeat 2 25 0 502 267 119 78 chr3 154265225 154265904 -73258674 - L2 LINE L2 0 3313 2599 449 192 0 0 chr3 154266218 154266291 -73258287 - MER5A DNA MER1_type -107 82 10 1579 228 17 89 chr3 154266377 154266961 -73257617 + MER34 LTR ERV1 1 542 0 927 184 17 16 chr3 154267110 154267455 -73257123 + MER63 DNA MER1_type 1 1020 -42 337 158 19 15 chr3 154267846 154267934 -73256644 - MIR SINE MIR -71 137 48 442 247 148 50 chr3 154267985 154268129 -73256449 - HAL1 LINE L1 -891 1616 1449 2189 109 0 13 chr3 154268129 154268433 -73256145 - AluSg SINE Alu -10 300 1 442 247 148 50 chr3 154268433 154268470 -73256108 - HAL1 LINE L1 -1058 1449 1417 * 542 287 221 38 chr3 154268450 154268665 -73255913 - HAL1 LINE L1 -1327 1180 1006 2330 58 41 7 chr3 154268665 154268958 -73255620 - AluY SINE Alu -8 303 1 542 287 221 38 chr3 154268958 154269320 -73255258 - HAL1 LINE L1 -1501 1006 497 7266 75 3 3 chr3 154269440 154270387 -73254191 + L1PA8 LINE L1 5217 6164 -8 32 26 0 0 chr3 154270635 154270674 -73253904 + AT_rich Low_complexity Low_complexity 1 39 0 376 278 6 56 chr3 154270767 154270929 -73253649 - HAL1 LINE L1 -145 2362 2209 1022 205 26 0 chr3 154270944 154271134 -73253444 + MER58A DNA MER1_type 30 224 0 4237 269 102 43 chr3 154271167 154271757 -73252821 - HAL1 LINE L1 -342 2165 1612 1858 207 16 34 chr3 154271757 154272138 -73252440 - MLT1A2 LTR MaLR 0 374 1 4237 269 102 43 chr3 154272138 154273580 -73250998 - HAL1 LINE L1 -895 1612 12 237 298 53 44 chr3 154273818 154273932 -73250646 + L2 LINE L2 2873 2987 -285 194 174 22 0 chr3 154274220 154274266 -73250312 + GA-rich Low_complexity Low_complexity 2 48 0 1099 271 38 29 chr3 154274397 154274744 -73249834 + MLT1I LTR MaLR 58 407 -2 372 327 223 13 chr3 154274790 154275108 -73249470 - L3 LINE CR1 -1 1576 1192 1241 148 5 10 chr3 154275732 154275935 -73248643 + MER3 DNA MER1_type 3 204 -5 2115 109 0 7 chr3 154275992 154276298 -73248280 + AluSx SINE Alu 31 334 0 984 247 20 12 chr3 154276367 154276618 -73247960 + MIR SINE MIR 8 260 -2 355 311 45 31 chr3 154276997 154277283 -73247295 + L1MC1 LINE L1 771 1060 -5059 1916 184 127 51 chr3 154277313 154277786 -73246792 - MLT2B2 LTR ERVL 0 515 7 400 274 46 85 chr3 154277828 154278426 -73246152 + L1MC1 LINE L1 1121 1858 -4272 745 303 26 33 chr3 154278621 154279076 -73245502 - L1M4 LINE L1 -2168 3978 3527 685 287 49 56 chr3 154279190 154279401 -73245177 - L1M4 LINE L1 -2930 3216 3005 1922 125 50 0 chr3 154279401 154279522 -73245056 + AluSx SINE Alu 1 115 -197 189 74 0 0 chr3 154279522 154279549 -73245029 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 1922 125 50 0 chr3 154279549 154279708 -73244870 + AluSx SINE Alu 115 295 -17 685 287 49 56 chr3 154279708 154280071 -73244507 - L1M4 LINE L1 -3141 3005 2646 936 248 157 88 chr3 154280114 154280795 -73243783 + L1MC1 LINE L1 4291 5018 -1111 355 145 0 53 chr3 154280795 154280871 -73243707 - L1PB4 LINE L1 -4 6152 6081 18917 85 2 0 chr3 154280898 154283380 -73241198 + L1PA5 LINE L1 11 2498 -3648 23021 39 0 6 chr3 154283381 154286814 -73237764 + L1PA5 LINE L1 2722 6151 -3 5107 133 15 9 chr3 154286824 154287104 -73237474 - L1PB4 LINE L1 -83 6073 5796 357 24 0 0 chr3 154287104 154287146 -73237432 + (TG)n Simple_repeat Simple_repeat 2 43 0 5107 133 15 9 chr3 154287146 154287201 -73237377 - L1PB4 LINE L1 -360 5796 5743 2674 123 8 3 chr3 154287201 154287574 -73237004 + THE1C LTR MaLR 1 375 0 5107 133 15 9 chr3 154287574 154288034 -73236544 - L1PB4 LINE L1 -413 5743 5272 2817 87 0 14 chr3 154288036 154288261 -73236317 + THE1B LTR MaLR 1 221 -143 1041 186 11 0 chr3 154288261 154288444 -73236134 - L1PB4 LINE L1 -13 6143 5959 2817 87 0 14 chr3 154288444 154288587 -73235991 + THE1B LTR MaLR 221 364 0 11533 107 37 0 chr3 154288587 154290111 -73234467 + THE1B-int LTR MaLR 1 1580 0 2865 96 3 6 chr3 154290111 154290476 -73234102 + THE1B LTR MaLR 1 364 0 1098 266 85 36 chr3 154290513 154291279 -73233299 + L1MC1 LINE L1 5026 5757 -388 204 182 0 0 chr3 154291291 154291335 -73233243 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 6183 113 19 36 chr3 154291342 154291971 -73232607 - Tigger1 DNA MER2_type -1 2417 1808 2334 67 0 3 chr3 154291971 154292285 -73232293 - AluY SINE Alu 0 313 1 6183 113 19 36 chr3 154292285 154292627 -73231951 - Tigger1 DNA MER2_type -610 1808 1462 * 6689 142 22 57 chr3 154292616 154293831 -73230747 - Tigger1 DNA MER2_type -1245 1173 1 267 193 60 12 chr3 154293831 154293914 -73230664 + (CATATA)n Simple_repeat Simple_repeat 5 91 0 257 248 99 10 chr3 154294043 154294144 -73230434 + L1ME LINE L1 5787 5896 -274 28 29 0 0 chr3 154294281 154294316 -73230262 + AT_rich Low_complexity Low_complexity 1 35 0 405 307 64 0 chr3 154294377 154294579 -73229999 - L1M4 LINE L1 -1821 4325 4111 228 350 14 8 chr3 154295352 154295467 -73229111 + MER5B DNA MER1_type 18 123 -55 499 196 170 0 chr3 154295469 154295581 -73228997 - MLT1H LTR MaLR -4 545 415 * 738 253 5 24 chr3 154295576 154295763 -73228815 - MLT1H LTR MaLR -381 168 1 937 267 108 17 chr3 154296188 154296540 -73228038 - MLT1K LTR MaLR -13 575 192 828 168 7 7 chr3 154296717 154296860 -73227718 - L1MC4 LINE L1 -507 7535 7393 763 196 41 122 chr3 154296860 154297130 -73227448 + MER21B LTR ERV1 1 248 -615 * 1771 205 73 37 chr3 154297122 154297614 -73226964 + MER21B LTR ERV1 376 811 -52 1009 142 0 6 chr3 154297646 154297808 -73226770 - L1MC4a LINE L1 -505 7303 7143 193 131 16 148 chr3 154297808 154297869 -73226709 + MER5B DNA MER1_type 126 178 0 613 237 0 0 chr3 154298093 154298207 -73226371 + MER81 DNA DNA 1 114 0 393 207 11 11 chr3 154298840 154298927 -73225651 - LTR33 LTR ERVL -18 503 417 832 142 10 117 chr3 154298929 154299035 -73225543 - MER5B DNA MER1_type -1 177 100 1461 200 16 16 chr3 154299035 154299355 -73225223 + MER33 DNA MER1_type 1 320 -4 832 142 10 117 chr3 154299355 154299445 -73225133 - MER5B DNA MER1_type -78 100 2 737 292 76 34 chr3 154299446 154299710 -73224868 - LTR33 LTR ERVL -98 423 149 310 196 0 0 chr3 154300079 154300135 -73224443 - MIR SINE MIR -13 249 194 341 252 112 9 chr3 154301931 154302038 -73222540 + L2 LINE L2 3141 3258 -14 799 233 22 33 chr3 154302305 154302485 -73222093 + MER45A DNA AcHobo 1 178 0 24 0 0 0 chr3 154302754 154302778 -73221800 + AT_rich Low_complexity Low_complexity 1 24 0 193 73 24 49 chr3 154304410 154304451 -73220127 + (TTTC)n Simple_repeat Simple_repeat 1 40 0 180 152 0 0 chr3 154304597 154304630 -73219948 + CT-rich Low_complexity Low_complexity 2 34 0 238 203 91 0 chr3 154304742 154304803 -73219775 - MIR3 SINE MIR -38 170 105 210 324 42 63 chr3 154304888 154305126 -73219452 + L2 LINE L2 2828 3060 -212 324 0 0 0 chr3 154307436 154307472 -73217106 + (CA)n Simple_repeat Simple_repeat 1 36 0 400 281 92 75 chr3 154307733 154308025 -73216553 - MLT1J LTR MaLR -95 416 120 2154 102 14 7 chr3 154308686 154308980 -73215598 + AluSx SINE Alu 1 296 -16 1119 249 0 15 chr3 154309692 154309953 -73214625 + MIR SINE MIR 6 262 0 2192 176 28 28 chr3 154310220 154310645 -73213933 + MLT2C2 LTR ERVL 1 425 -39 181 95 24 24 chr3 154310645 154310687 -73213891 + (TA)n Simple_repeat Simple_repeat 1 42 0 210 37 0 0 chr3 154310756 154310783 -73213795 + (TG)n Simple_repeat Simple_repeat 2 28 0 253 111 0 0 chr3 154310785 154310821 -73213757 + MLT2C2 LTR ERVL 427 462 -2 316 290 0 0 chr3 154311886 154311986 -73212592 - MER103 DNA DNA -57 109 10 185 35 69 0 chr3 154312274 154312303 -73212275 + C-rich Low_complexity Low_complexity 3 33 0 1341 196 9 0 chr3 154312921 154313141 -73211437 + MER58A DNA MER1_type 1 222 -2 369 0 0 0 chr3 154313200 154313241 -73211337 + (CA)n Simple_repeat Simple_repeat 1 41 0 442 272 68 19 chr3 154314014 154314176 -73210402 - MIR SINE MIR -1 261 92 1323 197 34 44 chr3 154316488 154316783 -73207795 - AluJo SINE Alu -17 295 4 766 53 23 15 chr3 154316991 154317122 -73207456 + (TAGA)n Simple_repeat Simple_repeat 3 134 0 192 213 16 49 chr3 154317340 154317401 -73207177 - MIR SINE MIR -11 251 193 646 218 9 0 chr3 154317887 154317997 -73206581 + MER81 DNA DNA 4 114 0 217 266 16 31 chr3 154318004 154318068 -73206510 - MIR SINE MIR -180 82 20 811 187 0 8 chr3 154318237 154318371 -73206207 - MER94 DNA DNA 0 134 2 213 274 0 0 chr3 154318850 154318901 -73205677 + CT-rich Low_complexity Low_complexity 3 53 0 256 254 0 30 chr3 154319121 154319188 -73205390 + MIR SINE MIR 190 254 -8 255 310 0 0 chr3 154319378 154319436 -73205142 + polypyrimidine Low_complexity Low_complexity 3 60 0 438 79 0 0 chr3 154319437 154319500 -73205078 + (CA)n Simple_repeat Simple_repeat 1 63 0 181 266 197 59 chr3 154319732 154319935 -73204643 - L2 LINE L2 -147 3125 2895 21 57 0 0 chr3 154320637 154320672 -73203906 + AT_rich Low_complexity Low_complexity 1 35 0 216 0 0 0 chr3 154320958 154320982 -73203596 + (TTG)n Simple_repeat Simple_repeat 1 24 0 497 157 0 0 chr3 154320991 154321061 -73203517 - AluSg/x SINE Alu -39 270 201 5228 89 35 13 chr3 154321204 154322001 -73202577 - L1PA13 LINE L1 -135 6028 5215 13395 195 35 7 chr3 154322002 154324340 -73200238 - L1PA13 LINE L1 -2219 4578 2309 542 150 0 0 chr3 154324340 154324420 -73200158 - MADE1 DNA Mariner 0 80 1 13395 195 35 7 chr3 154324420 154326511 -73198067 - L1PA13 LINE L1 -4488 2309 2 288 0 0 0 chr3 154327467 154327499 -73197079 + (TG)n Simple_repeat Simple_repeat 2 33 0 840 200 0 0 chr3 154327706 154327851 -73196727 + AluJb SINE Alu 141 285 -27 369 0 0 0 chr3 154327856 154327897 -73196681 + (TA)n Simple_repeat Simple_repeat 1 41 0 332 200 27 13 chr3 154328917 154328992 -73195586 - MLT1K LTR MaLR -2 586 511 2405 240 42 23 chr3 154329009 154329585 -73194993 - MLT1G LTR MaLR -3 587 1 470 285 53 93 chr3 154330492 154331230 -73193348 + L1MEc LINE L1 1141 1920 -4687 489 158 42 0 chr3 154331252 154331347 -73193231 + L1M1 LINE L1 35 133 -7432 * 16060 151 23 28 chr3 154331345 154334009 -73190569 + L1M1 LINE L1 1100 3749 -3816 1787 188 0 0 chr3 154334009 154334297 -73190281 + AluJb SINE Alu 1 288 -24 16060 151 23 28 chr3 154334297 154335233 -73189345 + L1M1 LINE L1 3749 4688 -2877 43659 30 25 1 chr3 154335235 154341240 -73183338 + L1PA2 LINE L1 1 6154 -1 207 0 0 0 chr3 154341244 154341267 -73183311 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 10576 180 32 3 chr3 154341269 154343378 -73181200 + L1M1 LINE L1 4668 6842 -743 1255 264 48 89 chr3 154343501 154343985 -73180593 - LTR16B LTR ERVL 0 464 1 585 366 38 27 chr3 154344104 154344737 -73179841 - HERVL LTR ERVL -310 5344 4705 23 0 0 0 chr3 154345244 154345267 -73179311 + AT_rich Low_complexity Low_complexity 1 23 0 4374 35 2 2 chr3 154345267 154345758 -73178820 - L1PA3 LINE L1 -5 6150 5660 1789 253 78 9 chr3 154345873 154346324 -73178254 - MLT1H1 LTR MaLR -15 540 59 422 269 59 25 chr3 154347014 154347133 -73177445 - L2 LINE L2 -1 3312 3190 665 125 0 0 chr3 154347581 154347694 -73176884 - AluSg/x SINE Alu 0 313 201 655 135 99 21 chr3 154347897 154348038 -73176540 + MER53 DNA DNA 6 157 -32 2619 156 45 19 chr3 154348053 154348539 -73176039 - L1MA8 LINE L1 -12 6279 5781 192 231 0 0 chr3 154348557 154348609 -73175969 + (TA)n Simple_repeat Simple_repeat 1 52 0 1814 147 50 0 chr3 154348638 154348937 -73175641 - L1MA8 LINE L1 -504 5787 5474 259 159 0 0 chr3 154348941 154348985 -73175593 + MER53 DNA DNA 146 189 0 319 312 61 6 chr3 154349017 154349169 -73175409 - MIR SINE MIR -64 144 23 1299 180 142 44 chr3 154350341 154350682 -73173896 - MSTD LTR MaLR 0 457 3 528 207 83 0 chr3 154350942 154351063 -73173515 + MER20B DNA MER1_type 55 185 -598 278 167 111 0 chr3 154351394 154351448 -73173130 - HAL1 LINE L1 -855 1652 1593 675 304 46 33 chr3 154351472 154351778 -73172800 - LTR16C LTR ERVL -15 476 167 643 267 61 47 chr3 154351897 154352241 -73172337 - HAL1 LINE L1 -914 1593 1245 2845 124 19 43 chr3 154352285 154352900 -73171678 + MER4E LTR ERV1 1 779 0 11298 27 3 0 chr3 154352993 154355012 -73169566 - L1PA4 LINE L1 -3 6152 4128 434 296 25 19 chr3 154355969 154356131 -73168447 - MIR SINE MIR -66 196 34 212 306 47 35 chr3 154356201 154356286 -73168292 + L2 LINE L2 3141 3226 -46 199 333 0 0 chr3 154356347 154356395 -73168183 - MIR SINE MIR -194 68 21 256 274 0 14 chr3 154356525 154356598 -73167980 + HAL1 LINE L1 2430 2501 -6 358 273 168 0 chr3 154356754 154356897 -73167681 + MIR3 SINE MIR 36 202 -6 10514 139 13 18 chr3 154358273 154359745 -73164833 + L1MA3 LINE L1 3449 4900 -1405 4928 121 3 3 chr3 154359745 154360448 -73164130 + L1PA13 LINE L1 5456 6158 -5 10514 139 13 18 chr3 154360448 154361826 -73162752 + L1MA3 LINE L1 4900 6284 -21 3956 127 34 27 chr3 154362518 154363264 -73161314 - Tigger3(Golem) DNA MER2_type -1 3028 2278 668 143 29 0 chr3 154363255 154363360 -73161218 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 2296 88 7 0 chr3 154363375 154363659 -73160919 + AluSc SINE Alu 1 286 -23 32 26 0 0 chr3 154363659 154363698 -73160880 + AT_rich Low_complexity Low_complexity 1 39 0 237 189 0 38 chr3 154363861 154363914 -73160664 - L2 LINE L2 -1 3271 3221 1956 123 3 7 chr3 154364002 154364294 -73160284 + AluJb SINE Alu 1 291 -21 1826 93 47 40 chr3 154364328 154364629 -73159949 + AluSg SINE Alu 8 310 0 438 306 35 20 chr3 154364913 154365168 -73159410 - L1MC4a LINE L1 -1976 5832 5574 218 213 21 0 chr3 154365236 154365283 -73159295 + L2 LINE L2 3266 3313 0 195 42 0 0 chr3 154366569 154366593 -73157985 + (CA)n Simple_repeat Simple_repeat 1 24 0 502 250 5 120 chr3 154366856 154366986 -73157592 + MER5B DNA MER1_type 1 102 -76 1119 186 95 67 chr3 154366986 154367271 -73157307 - AluJo SINE Alu -9 293 1 502 250 5 120 chr3 154367271 154367340 -73157238 + MER5B DNA MER1_type 102 177 -1 851 189 50 0 chr3 154367349 154367529 -73157049 + MER5A DNA MER1_type 1 189 0 205 316 143 10 chr3 154367657 154367755 -73156823 - L2 LINE L2 0 3272 3162 641 251 24 53 chr3 154367804 154368011 -73156567 - MIR SINE MIR -11 251 51 858 306 38 59 chr3 154368668 154369197 -73155381 + MLT1K LTR MaLR 71 588 0 2560 87 62 0 chr3 154369534 154369924 -73154654 + L1MA4A LINE L1 5888 6301 -2 835 114 0 0 chr3 154370845 154370976 -73153602 + L1MA3 LINE L1 6175 6305 0 644 230 225 5 chr3 154371015 154371224 -73153354 + MIR SINE MIR 5 259 -3 23 54 0 0 chr3 154371292 154371329 -73153249 + AT_rich Low_complexity Low_complexity 1 37 0 26 30 0 0 chr3 154371426 154371459 -73153119 + AT_rich Low_complexity Low_complexity 1 33 0 341 165 15 98 chr3 154371593 154371726 -73152852 + L1ME3A LINE L1 5961 6082 -88 249 338 12 0 chr3 154372135 154372215 -73152363 - L2 LINE L2 -5 3308 3228 1763 173 15 38 chr3 154372373 154372704 -73151874 - MLT2C1 LTR ERVL -13 384 62 1732 128 53 53 chr3 154372704 154373041 -73151537 + MER1B DNA MER1_type 1 337 0 1763 173 15 38 chr3 154373041 154373102 -73151476 - MLT2C1 LTR ERVL -335 62 1 468 0 0 0 chr3 154373172 154373224 -73151354 + (TG)n Simple_repeat Simple_repeat 2 53 0 297 0 0 0 chr3 154373395 154373428 -73151150 + (TG)n Simple_repeat Simple_repeat 2 34 0 260 219 14 55 chr3 154373593 154373666 -73150912 + MER5A DNA MER1_type 36 105 -84 2877 3 0 0 chr3 154374171 154374482 -73150096 - AluYa5 SINE Alu 0 311 1 302 254 100 1 chr3 154376917 154377057 -73147521 - L1ME3A LINE L1 -276 5888 5738 6612 183 20 3 chr3 154377224 154379409 -73145169 + L1PA15 LINE L1 4001 6165 0 463 324 55 40 chr3 154379469 154380178 -73144400 - L1MEd LINE L1 -5354 765 46 226 302 9 60 chr3 154380849 154380965 -73143613 + L2 LINE L2 3196 3305 -8 373 310 90 7 chr3 154381531 154381831 -73142747 + L1ME4a LINE L1 5726 6050 -71 195 235 0 0 chr3 154381935 154381986 -73142592 + CT-rich Low_complexity Low_complexity 2 52 0 1008 192 36 9 chr3 154382874 154383098 -73141480 + THE1-int LTR MaLR 130 359 -1221 261 0 0 0 chr3 154383341 154383370 -73141208 + (TTG)n Simple_repeat Simple_repeat 2 30 0 21 0 0 0 chr3 154383979 154384000 -73140578 + AT_rich Low_complexity Low_complexity 1 21 0 2015 144 3 10 chr3 154385481 154385787 -73138791 - AluJo SINE Alu -8 304 1 233 209 0 0 chr3 154385845 154385888 -73138690 + CT-rich Low_complexity Low_complexity 3 45 0 393 314 69 30 chr3 154386091 154386528 -73138050 - L1MC4a LINE L1 -1949 5859 5406 237 271 68 10 chr3 154387403 154387504 -73137074 - MIR SINE MIR -47 161 47 423 0 0 0 chr3 154388154 154388201 -73136377 + (TC)n Simple_repeat Simple_repeat 2 48 0 326 225 11 34 chr3 154388344 154388433 -73136145 + MER20B DNA MER1_type 1 87 -696 * 391 215 0 56 chr3 154388432 154388539 -73136039 + MER20B DNA MER1_type 683 783 0 200 349 72 0 chr3 154389298 154389381 -73135197 + L2 LINE L2 3139 3227 -45 2306 120 19 32 chr3 154389635 154390011 -73134567 - MER83C LTR ERV1 0 373 3 778 190 108 0 chr3 154390035 154390193 -73134385 - MER45A DNA AcHobo -2 176 2 622 229 120 47 chr3 154390742 154390934 -73133644 + MER63A DNA MER1_type 3 208 -2 327 277 107 0 chr3 154390935 154391094 -73133484 - Charlie8 DNA MER1_type -2186 231 56 25 0 0 0 chr3 154391877 154391902 -73132676 + AT_rich Low_complexity Low_complexity 1 25 0 243 88 0 0 chr3 154392455 154392489 -73132089 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 232 331 78 109 chr3 154392491 154392748 -73131830 - L2 LINE L2 -19 3253 3005 1322 244 48 23 chr3 154392760 154393199 -73131379 + LTR16C LTR ERVL 9 458 -33 2202 219 4 53 chr3 154393593 154394156 -73130422 + MLT1F LTR MaLR 8 542 0 658 180 0 16 chr3 154394610 154394738 -73129840 - MLT1F LTR MaLR -1 541 416 264 275 50 0 chr3 154394745 154394825 -73129753 + L1ME4a LINE L1 5688 5771 -350 304 189 151 0 chr3 154394839 154394945 -73129633 + L1ME4a LINE L1 5814 5935 -186 377 242 79 10 chr3 154395001 154395219 -73129359 - MLT1G1 LTR MaLR -3 589 302 360 111 0 0 chr3 154395235 154395289 -73129289 + (TTCTCC)n Simple_repeat Simple_repeat 2 55 0 524 181 11 11 chr3 154395373 154395467 -73129111 - MLT2C1 LTR ERVL -70 327 234 1927 179 0 0 chr3 154395471 154395828 -73128750 - L1MA6 LINE L1 -5 6295 5939 1148 103 0 11 chr3 154395835 154396019 -73128559 + L1MA6 LINE L1 5744 5925 -375 1531 185 36 0 chr3 154396019 154396322 -73128256 - MLT2C2 LTR ERVL -150 314 1 1893 279 121 31 chr3 154396536 154397656 -73126922 - HAL1b LINE L1 -30 1318 98 469 288 59 9 chr3 154398380 154398599 -73125979 + L1ME LINE L1 5522 5751 -370 547 250 16 0 chr3 154398778 154398902 -73125676 + L2 LINE L2 3188 3313 0 3161 217 63 8 chr3 154399130 154400594 -73123984 - L1MB8 LINE L1 -9 6351 4814 5885 137 15 13 chr3 154400954 154401436 -73123142 - L1MA6 LINE L1 0 6300 5821 1946 141 104 47 chr3 154401436 154401841 -73122737 + MSTA LTR MaLR 1 428 0 5885 137 15 13 chr3 154401841 154403258 -73121320 - L1MA6 LINE L1 -479 5821 4398 * 16043 191 16 6 chr3 154403253 154405796 -73118782 - L1PA15 LINE L1 -7 7596 4986 4665 118 15 10 chr3 154405796 154406482 -73118096 - LTR8 LTR ERV1 -2 689 1 16043 191 16 6 chr3 154406482 154408464 -73116114 - L1PA15 LINE L1 -2617 4986 3026 342 113 0 97 chr3 154408828 154408890 -73115688 - Charlie3 DNA MER1_type 0 2711 2656 447 323 36 12 chr3 154410003 154410251 -73114327 - L1PA15 LINE L1 -7327 254 1 9414 218 38 18 chr3 154410254 154413305 -73111273 - L1MB8 LINE L1 -1743 4585 1443 1861 199 61 27 chr3 154413305 154413717 -73110861 + MSTB LTR MaLR 1 426 0 9414 218 38 18 chr3 154413717 154414623 -73109955 - L1MB8 LINE L1 -4885 1443 556 1107 313 12 35 chr3 154414971 154415399 -73109179 - L1MB8 LINE L1 -5527 722 305 203 240 0 20 chr3 154415490 154415540 -73109038 + GA-rich Low_complexity Low_complexity 3 51 0 28 0 0 0 chr3 154415600 154415628 -73108950 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr3 154415783 154415810 -73108768 + AT_rich Low_complexity Low_complexity 1 27 0 553 268 38 14 chr3 154415851 154416060 -73108518 - L1MC4a LINE L1 -1849 5959 5746 460 313 7 13 chr3 154418534 154418684 -73105894 + MIR3 SINE MIR 37 185 -23 639 212 88 0 chr3 154418906 154419043 -73105535 + MER5A DNA MER1_type 1 149 -40 197 221 53 172 chr3 154419043 154419328 -73105250 + L2 LINE L2 2809 3059 -213 1873 213 106 45 chr3 154419397 154419500 -73105078 + MLT1E2 LTR MaLR 3 98 -528 2511 192 210 90 chr3 154419500 154420411 -73104167 + LTR28 LTR ERV1 1 1020 0 1873 213 106 45 chr3 154420411 154420949 -73103629 + MLT1E2 LTR MaLR 98 626 0 2021 98 7 3 chr3 154421016 154421302 -73103276 + AluSq SINE Alu 1 287 -26 189 0 0 0 chr3 154421305 154421326 -73103252 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 587 106 0 11 chr3 154421403 154421497 -73103081 + (TGGA)n Simple_repeat Simple_repeat 1 93 0 3607 63 2 0 chr3 154421653 154422094 -73102484 + MLT2A1 LTR ERVL 3 444 0 506 141 0 0 chr3 154423084 154423162 -73101416 + LTR67 LTR ERVL 480 557 0 180 343 104 0 chr3 154423182 154423249 -73101329 - L3b LINE CR1 -99 1484 1411 1128 293 88 32 chr3 154423249 154423774 -73100804 - LTR67 LTR ERVL 0 557 4 604 205 0 16 chr3 154424451 154424573 -73100005 + MIR SINE MIR 72 191 -71 22 56 0 0 chr3 154424719 154424755 -73099823 + AT_rich Low_complexity Low_complexity 1 36 0 2186 68 7 10 chr3 154425532 154425824 -73098754 + AluY SINE Alu 1 291 -20 2161 72 6 53 chr3 154427439 154427758 -73096820 - AluY SINE Alu -7 304 1 25 75 0 0 chr3 154428113 154428166 -73096412 + AT_rich Low_complexity Low_complexity 1 53 0 258 269 154 23 chr3 154428556 154428686 -73095892 - MIR SINE MIR -70 192 46 363 218 58 0 chr3 154429365 154429452 -73095126 + L2 LINE L2 3172 3263 -9 375 311 210 22 chr3 154431268 154431635 -73092943 - L2 LINE L2 -1 3271 2836 2390 47 0 10 chr3 154432265 154432562 -73092016 + AluY SINE Alu 1 294 -17 645 255 98 0 chr3 154432804 154432988 -73091590 + L2 LINE L2 3112 3313 0 185 167 0 93 chr3 154433131 154433185 -73091393 - L2 LINE L2 0 3313 3265 242 330 39 44 chr3 154433754 154433936 -73090642 + L3 LINE CR1 644 824 -753 241 315 27 0 chr3 154434914 154434987 -73089591 - MIR3 SINE MIR -7 201 127 983 282 100 57 chr3 154435559 154436109 -73088469 - L2 LINE L2 -1 3312 2749 2117 83 3 17 chr3 154436250 154436551 -73088027 - AluSc SINE Alu -11 298 2 2271 168 89 42 chr3 154438428 154438886 -73085692 + MLT2B1 LTR ERVL 1 480 -40 234 0 0 0 chr3 154438886 154438912 -73085666 + (CA)n Simple_repeat Simple_repeat 2 27 0 326 111 56 0 chr3 154438957 154439011 -73085567 + MLT2B1 LTR ERVL 464 520 0 361 292 35 9 chr3 154439278 154439391 -73085187 + MIR SINE MIR 35 150 -58 326 304 130 0 chr3 154439742 154439857 -73084721 + MIR SINE MIR 133 262 0 396 284 124 24 chr3 154440411 154440755 -73083823 - MLT1I LTR MaLR -4 405 26 4961 54 2 0 chr3 154492365 154493020 -73031558 - L1PA6 LINE L1 -287 5867 5212 317 114 0 0 chr3 154493026 154493070 -73031508 - MER53 DNA DNA -144 45 2 458 312 148 42 chr3 154493415 154493915 -73030663 - HAL1 LINE L1 -842 1665 1113 2139 110 3 0 chr3 154493971 154494271 -73030307 - AluSp SINE Alu -12 301 1 515 375 27 16 chr3 154495386 154495642 -73028936 - L3 LINE CR1 -1073 504 246 249 298 149 7 chr3 154496144 154496285 -73028293 + MIR3 SINE MIR 20 180 -28 6796 186 12 6 chr3 154496528 154498686 -73025892 + L1PA15 LINE L1 3980 6165 0 636 286 88 0 chr3 154498734 154498951 -73025627 - MIR SINE MIR -24 238 3 226 250 17 0 chr3 154498966 154499026 -73025552 + MER103 DNA DNA 25 85 -81 239 304 89 65 chr3 154499821 154499989 -73024589 + MIR SINE MIR 61 232 -30 1199 287 111 23 chr3 154500203 154500635 -73023943 + MLT1K LTR MaLR 5 474 -114 235 153 10 41 chr3 154500869 154500967 -73023611 + (CA)n Simple_repeat Simple_repeat 2 96 0 486 329 64 37 chr3 154502202 154502500 -73022078 - L2 LINE L2 -5 3267 2962 1059 181 11 5 chr3 154503055 154503243 -73021335 + MER5A DNA MER1_type 1 189 0 474 209 146 76 chr3 154503250 154503408 -73021170 + MER5B DNA MER1_type 10 178 0 270 268 319 7 chr3 154503416 154503554 -73021024 - MER5A DNA MER1_type 0 189 9 1038 286 111 29 chr3 154504476 154504892 -73019686 - L3 LINE CR1 -469 1108 659 247 280 140 20 chr3 154504899 154504999 -73019579 + MIR SINE MIR 30 141 -67 542 233 38 8 chr3 154505023 154505156 -73019422 + MIR SINE MIR 23 159 -103 210 211 70 9 chr3 154505173 154505287 -73019291 + (TA)n Simple_repeat Simple_repeat 2 122 0 466 236 36 9 chr3 154505293 154505403 -73019175 + MIR SINE MIR 146 258 -4 298 250 26 13 chr3 154505506 154505582 -73018996 - MER94 DNA DNA 0 134 58 297 296 78 73 chr3 154506172 154506351 -73018227 - L3 LINE CR1 -1158 419 240 2125 122 0 0 chr3 154507417 154507712 -73016866 + AluSx SINE Alu 1 295 -17 324 237 200 53 chr3 154507947 154508137 -73016441 - L2 LINE L2 -1 3312 3095 352 293 88 14 chr3 154508830 154508977 -73015601 + MIR SINE MIR 32 189 -73 911 265 135 4 chr3 154510349 154510579 -73013999 + MIR SINE MIR 3 262 0 907 36 0 0 chr3 154510937 154511047 -73013531 - L1PA5 LINE L1 0 6154 6045 2290 135 15 25 chr3 154511156 154511505 -73013073 + L1MB1 LINE L1 5779 6125 -43 1997 125 0 7 chr3 154511505 154511808 -73012770 + AluSp SINE Alu 1 301 -12 2290 135 15 25 chr3 154511808 154511851 -73012727 + L1MB1 LINE L1 6125 6167 -1 3468 117 38 21 chr3 154512416 154512524 -73012054 + L1MC1 LINE L1 5737 5842 -491 1807 159 3 0 chr3 154512524 154512813 -73011765 + AluJb SINE Alu 17 306 -6 3468 117 38 21 chr3 154512813 154513286 -73011292 + L1MC1 LINE L1 5842 6328 -5 2540 62 0 0 chr3 154513635 154513939 -73010639 + AluY SINE Alu 1 304 -7 276 284 12 12 chr3 154514042 154514123 -73010455 - MIR SINE MIR -60 148 68 25 0 0 0 chr3 154515383 154515408 -73009170 + AT_rich Low_complexity Low_complexity 1 25 0 302 233 81 0 chr3 154516146 154516232 -73008346 + MIR SINE MIR 30 122 -86 191 86 0 29 chr3 154516769 154516804 -73007774 + (TA)n Simple_repeat Simple_repeat 1 34 0 6466 47 5 0 chr3 154516805 154517578 -73007000 - L1PA7 LINE L1 -18 6136 5360 658 248 0 13 chr3 154518326 154518483 -73006095 - MER3 DNA MER1_type -87 122 15 335 293 31 81 chr3 154518863 154519085 -73005493 - MIR SINE MIR 0 262 52 564 278 111 59 chr3 154521584 154521955 -73002623 - MLT1J2 LTR MaLR -50 400 11 946 305 63 39 chr3 154522303 154522791 -73001787 + L2 LINE L2 2814 3313 0 631 204 1 0 chr3 154522902 154523053 -73001525 + L1M4 LINE L1 4896 5047 -1099 1572 174 26 30 chr3 154523067 154523371 -73001207 + AluJb SINE Alu 3 305 -7 762 117 0 0 chr3 154523374 154523494 -73001084 + (GAAA)n Simple_repeat Simple_repeat 1 120 0 706 150 24 14 chr3 154523468 154523680 -73000898 + GA-rich Low_complexity Low_complexity 1 214 0 * 1367 190 36 33 chr3 154523681 154524012 -73000566 + L1M4 LINE L1 5040 5371 -775 917 177 39 11 chr3 154524148 154524329 -73000249 + MER5A DNA MER1_type 3 188 -1 1153 173 35 0 chr3 154526402 154526604 -72997974 + MER3 DNA MER1_type 1 209 0 218 290 49 77 chr3 154526700 154526883 -72997695 - L2 LINE L2 -223 3049 2872 226 185 25 49 chr3 154527538 154527619 -72996959 + CT-rich Low_complexity Low_complexity 5 83 0 540 244 17 0 chr3 154527829 154527944 -72996634 + MER5A DNA MER1_type 10 126 -63 2351 99 0 10 chr3 154527995 154528307 -72996271 + AluSq SINE Alu 1 309 -4 2280 114 0 0 chr3 154528895 154529193 -72995385 - AluSx SINE Alu -14 298 1 443 277 33 11 chr3 154529717 154529901 -72994677 - L1MEd LINE L1 -3180 3202 3015 381 251 246 0 chr3 154529974 154530177 -72994401 - L1MEd LINE L1 -3504 2878 2626 263 283 155 9 chr3 154530261 154530488 -72994090 - L1MEd LINE L1 -3868 2514 2260 511 278 101 55 chr3 154530808 154530970 -72993608 - L1MEd LINE L1 -861 1882 1729 2081 144 19 72 chr3 154530970 154531443 -72993135 - L1MB4 LINE L1 -1 6179 5732 511 278 101 55 chr3 154531443 154531748 -72992830 - L1MEd LINE L1 -1014 1729 1440 351 0 0 0 chr3 154531748 154531787 -72992791 + (TC)n Simple_repeat Simple_repeat 2 40 0 511 278 101 55 chr3 154531787 154532016 -72992562 - L1MEd LINE L1 -1303 1440 1119 194 328 49 0 chr3 154532054 154532115 -72992463 - L2 LINE L2 -4 3309 3246 206 62 31 0 chr3 154532778 154532810 -72991768 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 1122 236 16 0 chr3 154533304 154533558 -72991020 - MIR SINE MIR -3 259 2 2622 120 43 7 chr3 154534426 154534843 -72989735 - MSTB1 LTR MaLR 0 432 1 236 329 14 0 chr3 154535006 154535076 -72989502 - L2 LINE L2 -8 3305 3235 332 179 0 0 chr3 154535085 154535141 -72989437 + Tigger5 DNA MER2_type 1 56 -2267 268 229 43 0 chr3 154535109 154535179 -72989399 + Tigger5 DNA MER2_type 2251 2323 0 * 208 308 13 64 chr3 154535590 154535668 -72988910 - L2 LINE L2 -1 3271 3198 916 275 97 30 chr3 154536136 154536529 -72988049 + L1ME4a LINE L1 5566 5984 -137 272 329 51 15 chr3 154537280 154537417 -72987161 + MIR3 SINE MIR 58 199 -9 367 281 74 8 chr3 154538068 154538189 -72986389 + MIR SINE MIR 78 206 -56 226 329 35 15 chr3 154538229 154538359 -72986219 - MER5B DNA MER1_type -23 166 26 1634 254 48 40 chr3 154539353 154539873 -72984705 + MLT1H1 LTR MaLR 30 553 -2 1018 255 124 38 chr3 154539953 154540509 -72984069 + L1ME4a LINE L1 5516 6119 -2 941 159 116 11 chr3 154540941 154541130 -72983448 - MER3 DNA MER1_type 0 209 1 488 321 31 8 chr3 154541180 154541410 -72983168 + MIR SINE MIR 14 249 -13 186 214 18 18 chr3 154543346 154543402 -72981176 - L2 LINE L2 -4 3268 3213 * 193 318 206 0 chr3 154543391 154543517 -72981061 + L2 LINE L2 3121 3272 0 217 256 73 0 chr3 154543880 154543962 -72980616 - L2 LINE L2 -49 3223 3136 3165 162 18 11 chr3 154544556 154545128 -72979450 - MER84 LTR ERVI 0 507 1 288 340 97 21 chr3 154546766 154546910 -72977668 - MIR SINE MIR -85 177 23 258 207 69 0 chr3 154547317 154547375 -72977203 - MLT1J1 LTR MaLR 0 446 385 207 161 0 0 chr3 154547727 154547758 -72976820 + (TCTG)n Simple_repeat Simple_repeat 2 32 0 232 178 22 0 chr3 154547954 154547999 -72976579 + L2 LINE L2 3268 3313 0 1001 222 0 35 chr3 154549459 154549689 -72974889 - MIR SINE MIR 0 262 41 287 222 59 105 chr3 154549843 154549996 -72974582 - MIR SINE MIR -41 221 76 426 271 56 21 chr3 154550225 154550369 -72974209 - MIR SINE MIR -70 192 44 198 0 0 0 chr3 154551315 154551337 -72973241 + (CAG)n Simple_repeat Simple_repeat 1 22 0 524 281 54 65 chr3 154551760 154552038 -72972540 - L2 LINE L2 -21 3251 2977 717 162 119 4 chr3 154552134 154552289 -72972289 - MER5A DNA MER1_type -6 176 23 657 192 44 33 chr3 154552291 154552539 -72972039 - LTR1B LTR ERV1 -3 823 443 526 295 113 46 chr3 154552555 154553013 -72971565 - L2 LINE L2 -601 2713 2225 587 274 71 10 chr3 154553167 154553443 -72971135 - LTR16A LTR ERVL 0 464 145 259 267 93 0 chr3 154553747 154553833 -72970745 - L2 LINE L2 -1489 1825 1732 314 263 206 38 chr3 154555861 154556021 -72968557 + MIR SINE MIR 61 247 -15 1873 137 0 11 chr3 154556848 154557119 -72967459 + AluSx SINE Alu 1 268 -44 858 102 0 0 chr3 154557120 154557247 -72967331 + (GAAA)n Simple_repeat Simple_repeat 3 129 0 1814 244 71 17 chr3 154557316 154557849 -72966729 - MLT1L LTR MaLR -8 607 46 22768 151 34 10 chr3 154557903 154563453 -72961125 + L1M1 LINE L1 17 5704 -1861 2149 125 0 25 chr3 154563453 154563773 -72960805 + AluSx SINE Alu 1 312 0 1482 140 4 4 chr3 154564290 154564518 -72960060 - AluJb SINE Alu 0 312 85 320 195 2 0 chr3 154565113 154565128 -72959450 + AluSp SINE Alu 130 135 -168 1498 113 13 123 chr3 154565128 154565428 -72959150 + AluSx SINE Alu 1 267 -45 2193 103 3 7 chr3 154567369 154567661 -72956917 - AluSg SINE Alu -19 291 1 364 118 0 129 chr3 154568039 154568069 -72956509 + MER53 DNA DNA 5 37 -152 2233 102 3 37 chr3 154568069 154568203 -72956375 + AluSx SINE Alu 1 138 -174 2501 84 0 0 chr3 154568203 154568514 -72956064 + AluY SINE Alu 1 311 0 2233 102 3 37 chr3 154568514 154568701 -72955877 + AluSx SINE Alu 138 311 -1 364 118 0 129 chr3 154568701 154568755 -72955823 + MER53 DNA DNA 37 78 -111 934 145 66 0 chr3 154569001 154569153 -72955425 + L1MB3 LINE L1 6015 6176 -7 454 298 82 0 chr3 154569443 154569614 -72954964 - MLT1L LTR MaLR -346 269 85 205 179 0 0 chr3 154570710 154570749 -72953829 - L2 LINE L2 -2 3270 3232 328 297 174 43 chr3 154572262 154572400 -72952178 + MIR SINE MIR 2 157 -105 215 129 0 0 chr3 154572692 154572723 -72951855 - L2 LINE L2 -92 3221 3191 1650 257 88 46 chr3 154573319 154573907 -72950671 + MLT1L LTR MaLR 3 615 0 247 310 64 21 chr3 154574079 154574266 -72950312 - L1M4 LINE L1 -1564 4582 4388 434 170 11 32 chr3 154575296 154575390 -72949188 - MER96 DNA MER1_type? 0 175 84 311 183 0 0 chr3 154575365 154575425 -72949153 + MER96 DNA MER1_type? 116 175 0 * 1303 248 86 67 chr3 154576026 154576819 -72947759 + L2 LINE L2 2503 3313 0 1556 248 51 7 chr3 154576927 154577355 -72947223 - L2 LINE L2 -805 2509 2063 1059 254 101 30 chr3 154577357 154577821 -72946757 - L2 LINE L2 -1558 1756 1260 209 286 177 54 chr3 154577974 154578177 -72946401 - MIR SINE MIR -19 243 16 283 170 74 12 chr3 154578737 154578954 -72945624 + AluJo SINE Alu 1 298 -4 978 192 71 0 chr3 154579164 154579204 -72945374 + MER3 DNA MER1_type 8 60 -149 313 211 108 72 chr3 154579204 154579370 -72945208 - MER3 DNA MER1_type 0 209 38 2418 193 73 43 chr3 154579513 154580113 -72944465 - MLT1E2 LTR MaLR -8 618 1 180 0 0 0 chr3 154580215 154580235 -72944343 + (T)n Simple_repeat Simple_repeat 1 20 0 1871 153 7 10 chr3 154580238 154580526 -72944052 + AluJb SINE Alu 10 296 -16 826 142 0 0 chr3 154583857 154583970 -72940608 - AluJb SINE Alu -23 289 177 27 0 0 0 chr3 154584357 154584384 -72940194 + AT_rich Low_complexity Low_complexity 1 27 0 4478 150 25 45 chr3 154585095 154586014 -72938564 + L1MA3 LINE L1 4270 5170 -976 1135 75 0 0 chr3 154586015 154586148 -72938430 + AluSg SINE Alu 1 133 -177 770 44 0 0 chr3 154586156 154586246 -72938332 + L1PA3 LINE L1 9 98 -6048 * 40064 35 1 2 chr3 154586240 154591782 -72932796 + L1PA3 LINE L1 617 6155 0 1398 85 11 5 chr3 154591790 154591978 -72932600 + AluSg SINE Alu 123 311 -1 6608 99 12 14 chr3 154591991 154592964 -72931614 + L1MA3 LINE L1 5335 6305 0 2246 117 0 3 chr3 154594511 154594809 -72929769 - AluSx SINE Alu -15 297 1 263 146 164 0 chr3 154594956 154595011 -72929567 + MER117 DNA MER1_type 4 67 -130 1675 233 34 63 chr3 154595011 154595487 -72929091 - LTR40b LTR ERVL 0 462 1 1166 219 37 4 chr3 154595487 154595733 -72928845 - HERVL40 LTR ERVL 0 5530 5277 778 338 8 28 chr3 154595680 154596068 -72928510 - MER89-int LTR ERV1 -289 6512 6133 * 1378 303 8 18 chr3 154596289 154596410 -72928168 - HERVL40 LTR ERVL -3257 2273 2152 1822 165 48 70 chr3 154596410 154596708 -72927870 - MLT1B LTR MaLR 0 390 102 2321 104 3 0 chr3 154596708 154597017 -72927561 - AluSx SINE Alu -2 310 1 1822 165 48 70 chr3 154597017 154597117 -72927461 - MLT1B LTR MaLR -288 102 1 1378 303 8 18 chr3 154597117 154597375 -72927203 - HERVL40 LTR ERVL -3378 2152 1898 3245 272 8 37 chr3 154597380 154597943 -72926635 - HERVL40 LTR ERVL -4127 1403 872 1397 190 14 0 chr3 154597943 154598164 -72926414 + MER58A DNA MER1_type 1 224 0 3245 272 8 37 chr3 154598164 154598461 -72926117 - HERVL40 LTR ERVL -4658 872 568 1589 271 58 50 chr3 154598538 154599103 -72925475 - HERVL40 LTR ERVL -4960 570 1 1675 256 27 25 chr3 154599118 154599462 -72925116 - LTR40b LTR ERVL -15 447 100 3652 157 57 16 chr3 154599462 154600081 -72924497 - LTR48B LTR ERV1 0 644 1 1675 256 27 25 chr3 154600081 154600182 -72924396 - LTR40b LTR ERVL -362 100 1 324 284 73 28 chr3 154600191 154600300 -72924278 + MER117 DNA MER1_type 73 186 -11 501 298 53 50 chr3 154600321 154600660 -72923918 + L1M4 LINE L1 4253 4592 -1554 653 263 128 0 chr3 154601665 154601821 -72922757 - MER45A DNA AcHobo 0 178 3 738 240 131 64 chr3 154602226 154602539 -72922039 + MER102b DNA MER1_type 2 335 -6 388 316 170 0 chr3 154604906 154605077 -72919501 + MIR SINE MIR 57 256 -6 225 65 0 0 chr3 154605532 154605563 -72919015 + (GTTTG)n Simple_repeat Simple_repeat 3 33 0 282 205 228 16 chr3 154605867 154605994 -72918584 - MIR SINE MIR -19 243 90 2578 205 37 14 chr3 154606175 154606741 -72917837 - MLT1G LTR MaLR -2 588 10 2906 166 11 21 chr3 154606753 154607288 -72917290 + L1MA8 LINE L1 5759 6288 -3 593 211 102 0 chr3 154608472 154608600 -72915978 - L2 LINE L2 -676 2638 2498 1245 157 84 147 chr3 154608609 154608672 -72915906 + MLT1C LTR MaLR 8 73 -394 1999 115 3 36 chr3 154608672 154608976 -72915602 + AluSx SINE Alu 1 294 -18 1245 157 84 147 chr3 154608976 154609306 -72915272 + MLT1C LTR MaLR 73 376 -91 324 331 15 7 chr3 154609423 154609559 -72915019 + L2 LINE L2 3176 3312 -1 607 304 130 56 chr3 154609809 154610326 -72914252 - MLT1H1 LTR MaLR 0 555 1 476 276 115 0 chr3 154611538 154611694 -72912884 + MER5B DNA MER1_type 1 174 -4 1117 276 64 58 chr3 154611718 154612764 -72911814 - L1MEd LINE L1 -4199 1930 514 219 36 0 0 chr3 154612814 154612842 -72911736 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 652 266 72 46 chr3 154612845 154613149 -72911429 - L1MEd LINE L1 -5718 401 90 361 261 8 30 chr3 154613149 154613283 -72911295 + L1MA9 LINE L1 6162 6292 -20 341 162 0 14 chr3 154613560 154613634 -72910944 + GA-rich Low_complexity Low_complexity 4 76 0 197 274 59 39 chr3 154614345 154614447 -72910131 + L2 LINE L2 3116 3219 -94 361 269 39 77 chr3 154614599 154614755 -72909823 - MIR SINE MIR -46 216 67 358 273 13 0 chr3 154614932 154615009 -72909569 - MER91A DNA MER1_type -104 92 15 242 292 67 11 chr3 154617534 154617623 -72906955 - L2 LINE L2 -33 3280 3187 2143 148 5 16 chr3 154617972 154618345 -72906233 - L1PB1 LINE L1 -1 6150 5782 424 108 72 0 chr3 154618349 154618432 -72906146 - L1PB1 LINE L1 -823 5323 5235 * 3699 186 3 68 chr3 154618429 154619033 -72905545 + L1 LINE L1 4265 4774 -1372 3044 28 11 0 chr3 154619033 154619393 -72905185 - L1PA3 LINE L1 -1 6154 5791 3699 186 3 68 chr3 154619393 154619837 -72904741 + L1 LINE L1 4774 5245 -901 358 121 0 0 chr3 154620060 154620118 -72904460 - MADE1 DNA Mariner 0 80 23 2162 101 30 0 chr3 154621471 154621768 -72902810 - AluSg SINE Alu -4 306 1 186 43 0 0 chr3 154621788 154621811 -72902767 + (CA)n Simple_repeat Simple_repeat 2 24 0 1023 277 39 32 chr3 154621812 154622370 -72902208 - L1ME3 LINE L1 -287 5875 5377 213 39 0 0 chr3 154622411 154622437 -72902141 + (TG)n Simple_repeat Simple_repeat 2 27 0 543 280 209 23 chr3 154622439 154623334 -72901244 - L1ME3 LINE L1 -852 5294 4068 770 286 109 53 chr3 154623335 154624153 -72900425 + L2 LINE L2 2170 3048 -224 242 323 65 11 chr3 154624186 154624279 -72900299 + L2 LINE L2 3202 3299 -14 1141 165 16 11 chr3 154625577 154625765 -72898813 + MER5A DNA MER1_type 1 189 0 777 176 11 57 chr3 154625766 154625942 -72898636 - MER5B DNA MER1_type -6 172 5 529 152 65 0 chr3 154626038 154626130 -72898448 - MER5A DNA MER1_type -68 121 24 381 276 26 53 chr3 154626327 154626368 -72898210 + MIR SINE MIR 105 146 -116 2299 152 8 22 chr3 154626368 154626770 -72897808 + MSTD LTR MaLR 1 396 0 381 276 26 53 chr3 154626770 154626880 -72897698 + MIR SINE MIR 146 252 -10 2045 115 10 30 chr3 154627041 154627346 -72897232 + AluSq SINE Alu 1 299 -14 372 325 65 0 chr3 154627961 154628115 -72896463 + L2 LINE L2 3109 3272 0 569 213 30 24 chr3 154628320 154628489 -72896089 - Charlie1b DNA MER1_type 0 523 354 582 192 19 0 chr3 154628594 154628698 -72895880 + FRAM SINE Alu 52 157 -19 1533 184 67 6 chr3 154628699 154629041 -72895537 - Charlie1b DNA MER1_type -160 363 1 309 200 47 12 chr3 154629041 154629126 -72895452 - MLT1J LTR MaLR -6 505 418 526 249 175 37 chr3 154629193 154629372 -72895206 - MLT1J LTR MaLR -205 306 76 1442 219 30 14 chr3 154629372 154629669 -72894909 - AluJo SINE Alu -10 302 1 526 249 175 37 chr3 154629669 154629758 -72894820 - MLT1J LTR MaLR -435 76 1 388 318 23 68 chr3 154630075 154630340 -72894238 + L2 LINE L2 2764 3016 -297 26 0 0 0 chr3 154630344 154630370 -72894208 + AT_rich Low_complexity Low_complexity 1 26 0 2740 158 25 15 chr3 154630370 154630900 -72893678 - MER89 LTR ERV1 -24 535 1 498 342 57 57 chr3 154630911 154631139 -72893439 + L2 LINE L2 3024 3251 -21 1964 147 10 3 chr3 154631150 154631442 -72893136 + AluJb SINE Alu 1 294 -18 2112 130 13 48 chr3 154632853 154633230 -72891348 - THE1B LTR MaLR 0 364 1 333 252 72 27 chr3 154633235 154633346 -72891232 + MIR3 SINE MIR 65 180 -28 402 250 45 18 chr3 154634148 154634260 -72890318 - L2 LINE L2 -2 3311 3197 21 71 0 0 chr3 154634890 154634932 -72889646 + AT_rich Low_complexity Low_complexity 1 42 0 1571 228 47 43 chr3 154636388 154636854 -72887724 + L1M3 LINE L1 417 884 -5419 10338 224 39 36 chr3 154636889 154639364 -72885214 + L1M3 LINE L1 824 3291 -3091 1778 162 7 27 chr3 154639364 154639661 -72884917 + AluJb SINE Alu 1 291 -21 10338 224 39 36 chr3 154639661 154640602 -72883976 + L1M3 LINE L1 3291 4228 -2154 2449 126 38 24 chr3 154640602 154641024 -72883554 - MSTA LTR MaLR 0 428 1 10338 224 39 36 chr3 154641024 154641426 -72883152 + L1M3 LINE L1 4228 4627 -1755 2275 118 0 0 chr3 154641426 154641731 -72882847 + AluSx SINE Alu 1 305 -7 10338 224 39 36 chr3 154641731 154642255 -72882323 + L1M3 LINE L1 4627 5031 -1351 587 170 0 10 chr3 154642257 154642357 -72882221 - Tigger7 DNA MER2_type 0 2487 2389 * 1491 205 0 4 chr3 154642355 154642623 -72881955 - Tigger7 DNA MER2_type -466 267 1 2456 173 25 49 chr3 154642623 154643336 -72881242 + L1M3 LINE L1 5032 5725 -694 979 153 69 54 chr3 154643391 154643590 -72880988 + Charlie1b DNA MER1_type 61 266 -2495 2104 108 0 43 chr3 154643590 154643895 -72880683 + AluSg SINE Alu 1 292 -18 979 153 69 54 chr3 154643895 154643956 -72880622 + Charlie1b DNA MER1_type 266 325 -198 253 159 0 0 chr3 154643972 154644016 -72880562 + L1MB1 LINE L1 6071 6114 -54 1482 186 3 20 chr3 154644021 154644327 -72880251 + L1M3 LINE L1 5722 6022 -382 1297 170 59 0 chr3 154645613 154645884 -72878694 - MER96B DNA MER1_type? -14 403 117 267 253 77 0 chr3 154645883 154645974 -72878604 + HsTC2 DNA Tc2 1796 1893 -5 * 2224 120 0 3 chr3 154646206 154646514 -72878064 + AluSg SINE Alu 1 307 -3 241 209 0 66 chr3 154646872 154646963 -72877615 + L1MC5 LINE L1 7848 7932 -29 243 0 0 0 chr3 154647058 154647085 -72877493 + (TG)n Simple_repeat Simple_repeat 2 28 0 1086 217 11 18 chr3 154648164 154648441 -72876137 + Charlie4a DNA MER1_type 44 318 -190 3514 136 29 24 chr3 154648448 154649103 -72875475 + Tigger3b DNA MER2_type 1 658 -573 577 162 29 9 chr3 154649135 154649240 -72875338 - FLAM_A SINE Alu -34 108 2 1200 143 132 4 chr3 154649242 154649508 -72875070 + Tigger3b DNA MER2_type 650 949 -283 4342 130 24 26 chr3 154649534 154649726 -72874852 - L1MA5 LINE L1 -2 7319 7128 12048 22 1 0 chr3 154649726 154651904 -72872674 - L1PA3 LINE L1 0 6155 3976 1955 118 10 31 chr3 154651910 154652223 -72872355 - AluSx SINE Alu 0 307 1 4342 130 24 26 chr3 154652223 154652814 -72871764 - L1MA5 LINE L1 -198 7123 6530 9902 39 0 1 chr3 154652814 154654029 -72870549 + HERV17 LTR ERV1 3100 4313 -4313 15868 52 1 1 chr3 154654130 154656151 -72868427 + HERV17 LTR ERV1 3999 6019 -2607 261 77 0 0 chr3 154656144 154656183 -72868395 + HERV17 LTR ERV1 7510 7548 -1078 * 2240 68 0 0 chr3 154656173 154656465 -72868113 + HERV17 LTR ERV1 8335 8626 0 2594 52 0 3 chr3 154656465 154656792 -72867786 + LTR17 LTR ERV1 1 326 -454 14166 185 17 31 chr3 154656806 154657012 -72867566 - L1MA5 LINE L1 -743 6424 6217 2432 96 3 0 chr3 154657012 154657324 -72867254 - AluSp SINE Alu 0 313 1 14166 185 17 31 chr3 154657324 154659138 -72865440 - L1MA5 LINE L1 -950 6217 4379 198 0 0 0 chr3 154659138 154659160 -72865418 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 14166 185 17 31 chr3 154659160 154661060 -72863518 - L1MA5 LINE L1 -2788 4379 2454 1910 147 18 0 chr3 154661060 154661345 -72863233 - AluJo SINE Alu -22 290 1 14166 185 17 31 chr3 154661345 154663590 -72860988 - L1MA5 LINE L1 -4713 2454 484 670 122 0 0 chr3 154663593 154663691 -72860887 + AluSg/x SINE Alu 204 301 -8 1554 129 4 4 chr3 154663691 154663932 -72860646 + Tigger3b DNA MER2_type 991 1231 0 2633 39 0 7 chr3 154663953 154664258 -72860320 + AluY SINE Alu 1 303 -8 739 194 13 0 chr3 154664269 154664424 -72860154 + Charlie4 DNA MER1_type 1804 1960 -1 1991 144 0 17 chr3 154664873 154665164 -72859414 + AluSx SINE Alu 1 286 -26 289 77 19 0 chr3 154665325 154665377 -72859201 + L1M LINE L1 5279 5331 -2454 559 160 0 0 chr3 154665428 154665534 -72859044 + L1MD1 LINE L1 4753 4858 -1288 * 3367 129 187 99 chr3 154665531 154666055 -72858523 - L1MC3 LINE L1 0 7785 7309 248 253 13 0 chr3 154666055 154666134 -72858444 - MLT1F1 LTR MaLR -453 114 35 3367 129 187 99 chr3 154666134 154666541 -72858037 - L1MC3 LINE L1 -476 7309 6687 1006 204 30 22 chr3 154666544 154666757 -72857821 + L1MD1 LINE L1 4849 5059 -1183 2419 93 3 0 chr3 154666757 154667069 -72857509 + AluSp SINE Alu 1 313 0 1006 204 30 22 chr3 154667069 154667683 -72856895 + L1MD1 LINE L1 5059 5876 -366 534 255 5 69 chr3 154667687 154667891 -72856687 + L1ME1 LINE L1 5968 6158 -8 2144 106 3 23 chr3 154668252 154668555 -72856023 + AluSg SINE Alu 1 297 -13 21 0 0 0 chr3 154669462 154669483 -72855095 + AT_rich Low_complexity Low_complexity 1 21 0 686 36 0 0 chr3 154669704 154669787 -72854791 + L1PA5 LINE L1 6061 6143 -11 35 24 0 0 chr3 154669787 154669829 -72854749 + AT_rich Low_complexity Low_complexity 1 42 0 2236 189 38 29 chr3 154669851 154670401 -72854177 + L1MB8 LINE L1 5615 6169 -9 380 191 12 0 chr3 154670402 154670486 -72854092 + GA-rich Low_complexity Low_complexity 4 88 0 524 248 51 19 chr3 154670609 154670766 -72853812 - LTR67 LTR ERVL -367 190 29 469 347 51 16 chr3 154670815 154671126 -72853452 - L2 LINE L2 -635 2679 2358 1217 231 22 0 chr3 154671151 154671463 -72853115 - L1MEc LINE L1 -3319 2896 2578 1516 111 0 5 chr3 154671473 154671680 -72852898 - AluSq SINE Alu -13 300 95 13989 165 23 47 chr3 154671701 154673154 -72851424 - L1M1 LINE L1 -602 5880 4393 834 89 32 0 chr3 154673154 154673278 -72851300 - L1MA3 LINE L1 0 6305 6178 13989 165 23 47 chr3 154673278 154674197 -72850381 - L1M1 LINE L1 -2089 4393 3453 1852 114 0 24 chr3 154674197 154674487 -72850091 - L1PA11 LINE L1 0 6174 5892 13989 165 23 47 chr3 154674487 154674834 -72849744 - L1M1 LINE L1 -3029 3453 3099 4669 169 27 57 chr3 154674834 154675938 -72848640 - MER11C LTR ERVK 0 1071 1 13989 165 23 47 chr3 154675938 154677023 -72847555 - L1M1 LINE L1 -3383 3099 2168 5864 186 51 33 chr3 154677565 154678765 -72845813 - L1M1 LINE L1 -4065 1263 877 1904 166 0 22 chr3 154678765 154679084 -72845494 - AluJo SINE Alu 0 312 1 5864 186 51 33 chr3 154679084 154679977 -72844601 - L1M1 LINE L1 -4451 877 1 229 159 0 0 chr3 154679979 154680023 -72844555 - L1MEc LINE L1 -4136 2260 2217 1073 246 94 18 chr3 154680047 154680430 -72844148 - L1MEc LINE L1 -5033 1363 933 1945 121 11 11 chr3 154680430 154680748 -72843830 - AluSq SINE Alu 0 318 1 1073 246 94 18 chr3 154680748 154680854 -72843724 - L1MEc LINE L1 -5463 933 836 * 1407 209 127 16 chr3 154680852 154681403 -72843175 + L1MC5 LINE L1 7314 7925 -36 328 313 52 81 chr3 154681408 154681567 -72843011 + L2 LINE L2 3020 3173 -99 2154 100 0 4 chr3 154681567 154681848 -72842730 - AluSx SINE Alu -32 280 1 328 313 52 81 chr3 154681848 154681899 -72842679 + L2 LINE L2 3173 3224 -48 263 290 16 0 chr3 154682465 154682527 -72842051 + (CA)n Simple_repeat Simple_repeat 2 64 0 310 234 32 43 chr3 154682529 154682623 -72841955 - L2 LINE L2 -28 3244 3152 202 196 0 36 chr3 154682691 154682747 -72841831 + (TTTA)n Simple_repeat Simple_repeat 4 57 0 232 298 0 0 chr3 154683253 154683310 -72841268 + (TAA)n Simple_repeat Simple_repeat 1 57 0 315 272 107 90 chr3 154683478 154683550 -72841028 - L1M2 LINE L1 -5598 1251 1182 258 32 0 0 chr3 154683550 154683581 -72840997 + (GGA)n Simple_repeat Simple_repeat 2 32 0 315 272 107 90 chr3 154683581 154683909 -72840669 - L1M2 LINE L1 -5667 1182 844 201 39 0 0 chr3 154683918 154683944 -72840634 + (CGGTG)n Simple_repeat Simple_repeat 5 30 0 3194 179 90 4 chr3 154684212 154684922 -72839656 - L1MC3 LINE L1 -8 7777 7007 2482 78 0 0 chr3 154686151 154686457 -72838121 + AluSc SINE Alu 1 306 -3 1496 112 4 17 chr3 154687406 154687647 -72836931 - L1PA14 LINE L1 -2 6159 5922 738 265 150 29 chr3 154688137 154688511 -72836067 - L2 LINE L2 -12 3301 2883 * 758 268 37 37 chr3 154688486 154688807 -72835771 - L2 LINE L2 -1472 1842 1522 2568 49 0 0 chr3 154688811 154689115 -72835463 + AluYa5 SINE Alu 5 308 -3 1178 117 47 0 chr3 154689115 154689286 -72835292 + AluSg/x SINE Alu 132 310 0 1406 201 108 27 chr3 154689292 154689661 -72834917 - L2 LINE L2 -1779 1535 1137 1058 96 0 0 chr3 154689961 154690097 -72834481 + AluJb SINE Alu 1 136 -176 1099 165 11 6 chr3 154690124 154690300 -72834278 + AluJb SINE Alu 121 297 -15 2243 78 0 0 chr3 154690358 154690629 -72833949 + AluSg SINE Alu 1 271 -39 2272 113 0 7 chr3 154691076 154691386 -72833192 + AluSp SINE Alu 1 308 -5 486 0 0 0 chr3 154691402 154691456 -72833122 + (TC)n Simple_repeat Simple_repeat 1 54 0 644 230 71 0 chr3 154692139 154692335 -72832243 + L1ME3A LINE L1 5953 6162 -8 2275 105 0 0 chr3 154692357 154692663 -72831915 + AluSq SINE Alu 1 306 -7 432 97 0 0 chr3 154693899 154693961 -72830617 + (CATA)n Simple_repeat Simple_repeat 4 65 0 2561 90 6 0 chr3 154693961 154694316 -72830262 + L1PB1 LINE L1 5793 6149 -2 345 47 0 0 chr3 154695103 154695146 -72829432 + (TG)n Simple_repeat Simple_repeat 1 43 0 3399 168 19 48 chr3 154695375 154696524 -72828054 - L1P5 LINE L1 -523 5628 4522 5698 181 27 15 chr3 154696702 154698465 -72826113 - L1P4 LINE L1 -417 5749 3977 269 227 0 45 chr3 154698596 154698684 -72825894 + L1MC3 LINE L1 7701 7784 -1 3049 140 113 28 chr3 154698732 154699709 -72824869 + L1MA4 LINE L1 4960 6020 -280 399 122 49 0 chr3 154699716 154699798 -72824780 + L1MB3 LINE L1 6090 6175 -8 2642 118 16 0 chr3 154699806 154700239 -72824339 + L1M2 LINE L1 5320 5759 -532 3490 139 34 1 chr3 154700522 154701584 -72822994 + L1P4 LINE L1 4640 5733 -435 2458 80 10 6 chr3 154701711 154702023 -72822555 - AluSp SINE Alu 0 313 1 2200 112 3 0 chr3 154702424 154702720 -72821858 + AluSc SINE Alu 1 297 -12 2318 105 0 7 chr3 154702732 154703037 -72821541 + AluSx SINE Alu 1 303 -9 1245 174 26 89 chr3 154703318 154703476 -72821102 + AluJb SINE Alu 1 133 -179 2283 87 3 10 chr3 154703476 154703774 -72820804 + AluSp SINE Alu 3 298 -15 1245 174 26 89 chr3 154703774 154703919 -72820659 + AluJb SINE Alu 132 285 -27 203 30 0 61 chr3 154703919 154703952 -72820626 + (TGAA)n Simple_repeat Simple_repeat 3 33 0 183 149 128 21 chr3 154704035 154704082 -72820496 - L2 LINE L2 -5 3308 3257 717 83 0 0 chr3 154704191 154704287 -72820291 - AluY SINE Alu -215 96 1 221 271 29 14 chr3 154704355 154704425 -72820153 - L3 LINE CR1 -592 985 915 284 142 150 44 chr3 154704482 154704595 -72819983 - L1MEc LINE L1 -3565 2650 2526 1368 154 5 5 chr3 154704662 154704882 -72819696 + AluJb SINE Alu 85 304 -8 682 183 0 38 chr3 154704896 154705027 -72819551 - FLAM_C SINE Alu -17 126 1 1607 186 92 36 chr3 154705042 154705543 -72819035 - L1MEc LINE L1 -5465 931 403 484 71 0 0 chr3 154705561 154705631 -72818947 - Alu SINE Alu -6 306 237 818 212 96 66 chr3 154705640 154705975 -72818603 - L1MEc LINE L1 -6013 383 39 896 198 0 16 chr3 154706008 154706200 -72818378 - MER3 DNA MER1_type -19 190 2 38 0 0 0 chr3 154706281 154706319 -72818259 + AT_rich Low_complexity Low_complexity 1 38 0 2113 116 0 0 chr3 154706341 154706664 -72817914 - AluSx SINE Alu 0 323 1 1828 165 3 29 chr3 154707123 154707439 -72817139 - AluSx SINE Alu -4 308 1 509 108 0 12 chr3 154707448 154707531 -72817047 + (TTCC)n Simple_repeat Simple_repeat 3 84 0 1655 204 183 9 chr3 154707641 154708575 -72816003 + L1ME LINE L1 4677 5772 -394 210 158 0 0 chr3 154708614 154708652 -72815926 + (TA)n Simple_repeat Simple_repeat 2 39 0 600 85 0 0 chr3 154708677 154708759 -72815819 + AluSp/q SINE Alu 224 305 -8 277 141 103 0 chr3 154708761 154708839 -72815739 + L1MB7 LINE L1 6099 6184 0 527 265 111 28 chr3 154709068 154709392 -72815186 + L1ME4a LINE L1 5506 5856 -265 291 266 89 41 chr3 154709428 154709597 -72814981 + L1ME4a LINE L1 5944 6120 -1 286 211 195 24 chr3 154709609 154709732 -72814846 - L1ME4a LINE L1 -3 6118 5975 300 218 369 11 chr3 154710402 154710581 -72813997 + MIR SINE MIR 20 262 0 1977 112 37 27 chr3 154710623 154710917 -72813661 + AluSg SINE Alu 9 305 -5 180 0 0 0 chr3 154710921 154710941 -72813637 + (TA)n Simple_repeat Simple_repeat 1 20 0 539 276 151 31 chr3 154710944 154711169 -72813409 + MIR SINE MIR 8 259 -3 382 245 113 9 chr3 154711414 154711520 -72813058 + L2 LINE L2 3147 3263 -9 300 279 90 18 chr3 154712103 154712214 -72812364 - L1ME4a LINE L1 -40 6081 5963 2527 62 0 0 chr3 154712381 154712687 -72811891 - AluY SINE Alu -5 306 1 298 172 17 17 chr3 154713071 154713129 -72811449 - L2 LINE L2 -1 3271 3214 933 243 87 34 chr3 154713363 154713587 -72810991 + L1MC5 LINE L1 6668 6879 -1082 2175 120 29 32 chr3 154713587 154713963 -72810615 + THE1C LTR MaLR 1 375 0 933 243 87 34 chr3 154713963 154714186 -72810392 + L1MC5 LINE L1 6879 7139 -822 2110 97 3 7 chr3 154714823 154715111 -72809467 - AluSx SINE Alu -19 293 7 1410 103 52 40 chr3 154715706 154715978 -72808600 + L1MA2 LINE L1 6030 6304 0 216 0 0 0 chr3 154716005 154716029 -72808549 + (A)n Simple_repeat Simple_repeat 1 24 0 2135 107 14 10 chr3 154716048 154716338 -72808240 + AluSx SINE Alu 1 291 -21 725 171 8 8 chr3 154718038 154718167 -72806411 + FLAM_C SINE Alu 1 129 -4 1994 64 4 0 chr3 154718322 154718573 -72806005 + L1PA7 LINE L1 5762 6013 -141 29190 95 12 16 chr3 154718674 154722871 -72801707 - L1P LINE L1 -1964 4182 4 811 245 164 3 chr3 154722880 154723178 -72801400 - L1M4 LINE L1 -2097 4049 3704 991 98 0 15 chr3 154723179 154723312 -72801266 - FLAM_C SINE Alu -5 138 8 2194 210 51 76 chr3 154723319 154723541 -72801037 - L1M4 LINE L1 -2434 3712 3486 2247 112 3 10 chr3 154723541 154723845 -72800733 - AluSp SINE Alu -11 302 1 2194 210 51 76 chr3 154723845 154724385 -72800193 - L1M4 LINE L1 -2660 3486 2971 1525 206 34 14 chr3 154724385 154724676 -72799902 - AluJo SINE Alu -15 297 1 2194 210 51 76 chr3 154724676 154724758 -72799820 - L1M4 LINE L1 -3175 2971 2888 2129 68 38 0 chr3 154724866 154725130 -72799448 - AluSc SINE Alu -35 274 1 540 311 92 31 chr3 154725624 154725917 -72798661 - LTR16A LTR ERVL -124 326 16 708 119 32 45 chr3 154726219 154726437 -72798141 - AluJb SINE Alu -15 297 2 2074 128 3 0 chr3 154727209 154727514 -72797064 + AluSx SINE Alu 1 306 0 656 288 125 59 chr3 154727559 154728366 -72796212 + L2 LINE L2 2203 3055 -217 188 273 76 0 chr3 154728540 154728606 -72795972 - MIR3 SINE MIR -1 207 137 185 88 18 70 chr3 154729159 154729216 -72795362 + (TATATG)n Simple_repeat Simple_repeat 6 59 0 2505 71 0 0 chr3 154729391 154729687 -72794891 + AluSg SINE Alu 1 296 -14 1705 178 14 7 chr3 154729731 154730017 -72794561 + AluJo SINE Alu 1 288 -24 197 244 0 0 chr3 154730174 154730219 -72794359 - L2 LINE L2 -15 3257 3213 1949 156 0 7 chr3 154730559 154730866 -72793712 + AluJo SINE Alu 1 305 -7 763 185 15 0 chr3 154730872 154731002 -72793576 + FLAM_C SINE Alu 1 132 -1 1429 119 35 9 chr3 154731024 154731251 -72793327 + MSTB LTR MaLR 194 426 0 2411 77 0 16 chr3 154731721 154732032 -72792546 + AluY SINE Alu 1 306 -5 2240 96 3 10 chr3 154732861 154733163 -72791415 - AluSx SINE Alu -12 300 1 925 151 0 14 chr3 154733300 154733446 -72791132 - AluJb SINE Alu -1 311 168 1487 172 31 14 chr3 154733515 154733805 -72790773 - AluJo SINE Alu -16 296 2 2212 111 10 0 chr3 154734111 154734418 -72790160 + AluSx SINE Alu 1 310 -2 376 102 0 0 chr3 154734779 154734828 -72789750 + AluSg SINE Alu 35 83 -217 217 306 19 28 chr3 154734941 154735049 -72789529 + G-rich Low_complexity Low_complexity 3 109 0 831 117 0 0 chr3 154735104 154735215 -72789363 - AluSq/x SINE Alu -201 111 1 918 122 21 117 chr3 154735215 154735295 -72789283 + MER119 DNA MER1_type 413 466 -117 2075 119 3 34 chr3 154735295 154735615 -72788963 + AluSx SINE Alu 1 310 -2 918 122 21 117 chr3 154735615 154735722 -72788856 + MER119 DNA MER1_type 466 582 -1 298 254 66 49 chr3 154735724 154735846 -72788732 - L1ME LINE L1 -466 5655 5532 240 95 71 0 chr3 154736150 154736192 -72788386 - MER53 DNA DNA -1 188 144 1671 136 92 0 chr3 154736192 154736465 -72788113 + AluJo SINE Alu 1 298 -14 545 109 160 59 chr3 154736502 154736621 -72787957 + FLAM_C SINE Alu 12 142 -1 6904 64 7 12 chr3 154736623 154737596 -72786982 + L1PA10 LINE L1 5198 6165 -3 1314 140 140 44 chr3 154737617 154737888 -72786690 + AluJb SINE Alu 1 297 -15 406 205 62 50 chr3 154738037 154738130 -72786448 - AluJo/FRAM SINE Alu 0 302 212 2250 80 42 0 chr3 154738130 154738418 -72786160 - AluY SINE Alu -11 300 1 406 205 62 50 chr3 154738418 154738430 -72786148 - AluJo/FRAM SINE Alu -90 212 202 1780 146 0 4 chr3 154738430 154738704 -72785874 - AluSx SINE Alu -13 299 27 406 205 62 50 chr3 154738704 154738758 -72785820 - AluJo/FRAM SINE Alu -100 202 140 4747 116 31 36 chr3 154738764 154738961 -72785617 - L1PA16 LINE L1 -133 6033 5836 2226 81 0 78 chr3 154738961 154739132 -72785446 - AluSp SINE Alu -18 295 112 233 29 0 29 chr3 154739132 154739167 -72785411 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2226 81 0 78 chr3 154739167 154739180 -72785398 - AluSp SINE Alu -201 112 100 2371 70 11 0 chr3 154739180 154739465 -72785113 - AluSp SINE Alu -25 288 1 2226 81 0 78 chr3 154739465 154739599 -72784979 - AluSp SINE Alu -213 100 1 4747 116 31 36 chr3 154739599 154740036 -72784542 - L1PA16 LINE L1 -330 5836 5398 2109 103 19 32 chr3 154740036 154740347 -72784231 - AluSc SINE Alu -2 307 1 4747 116 31 36 chr3 154740347 154740388 -72784190 - L1PA16 LINE L1 -768 5398 5358 2044 123 17 7 chr3 154740388 154740690 -72783888 - AluSx SINE Alu -7 305 1 4747 116 31 36 chr3 154740690 154740893 -72783685 - L1PA16 LINE L1 -808 5358 5152 211 314 0 0 chr3 154742965 154743016 -72781562 + G-rich Low_complexity Low_complexity 3 53 0 46 45 0 0 chr3 154743454 154743521 -72781057 + GC_rich Low_complexity Low_complexity 1 67 0 318 238 71 0 chr3 154745605 154745689 -72778889 + MIR3 SINE MIR 94 183 -25 215 245 0 0 chr3 154746754 154746807 -72777771 + T-rich Low_complexity Low_complexity 1 53 0 2106 85 3 21 chr3 154746907 154747189 -72777389 + AluSq SINE Alu 21 297 -16 1553 202 24 14 chr3 154747585 154747872 -72776706 - AluJo SINE Alu -22 290 1 2511 70 0 3 chr3 154747880 154748180 -72776398 - AluSg SINE Alu -11 299 1 188 167 0 0 chr3 154748221 154748251 -72776327 + L2 LINE L2 3262 3291 -22 1251 150 127 41 chr3 154748803 154749070 -72775508 - AluJo SINE Alu -9 303 14 1010 195 0 0 chr3 154749274 154749443 -72775135 - AluSg/x SINE Alu -18 294 126 2413 67 7 0 chr3 154749624 154749924 -72774654 - AluY SINE Alu -9 302 1 1030 155 4 123 chr3 154750043 154750294 -72774284 - AluJb SINE Alu -8 304 84 1471 186 90 4 chr3 154750620 154750899 -72773679 - AluJo SINE Alu -9 303 1 2105 122 3 7 chr3 154750910 154751214 -72773364 - AluSc SINE Alu -6 303 1 385 331 8 0 chr3 154751425 154751555 -72773023 + MER5A DNA MER1_type 12 142 -47 2121 89 13 36 chr3 154751683 154751986 -72772592 - AluSx SINE Alu -16 296 1 1134 166 49 5 chr3 154752263 154752468 -72772110 - MER2 DNA MER2_type 0 345 132 3152 127 57 21 chr3 154752468 154752979 -72771599 - MER1A DNA MER1_type 0 529 1 680 235 0 0 chr3 154752979 154753113 -72771465 - MER2 DNA MER2_type -206 139 6 1831 76 133 8 chr3 154753561 154753810 -72770768 + AluSg SINE Alu 1 280 -30 2123 130 0 3 chr3 154754090 154754382 -72770196 + AluSx SINE Alu 1 291 -21 243 273 0 15 chr3 154754410 154754476 -72770102 + Charlie8 DNA MER1_type 105 169 -2248 2562 48 0 22 chr3 154754626 154754940 -72769638 + AluY SINE Alu 1 307 -4 2861 217 100 41 chr3 154754948 154755957 -72768621 - L1M4 LINE L1 -1248 4898 3603 2327 78 26 13 chr3 154755957 154756265 -72768313 - AluSp SINE Alu 0 313 2 2861 217 100 41 chr3 154756265 154756771 -72767807 - L1M4 LINE L1 -2543 3603 3129 1636 124 20 0 chr3 154756773 154757022 -72767556 - AluSx SINE Alu -9 303 50 511 132 0 0 chr3 154757076 154757152 -72767426 - AluS SINE Alu -237 76 1 22 35 0 0 chr3 154757239 154757268 -72767310 + AT_rich Low_complexity Low_complexity 1 29 0 2274 76 33 0 chr3 154757411 154757712 -72766866 - AluY SINE Alu 0 311 1 2097 125 3 25 chr3 154758753 154759072 -72765506 - AluSq SINE Alu 0 313 2 2146 92 7 10 chr3 154759075 154759369 -72765209 - AluSc SINE Alu -16 293 1 647 195 16 8 chr3 154759396 154759519 -72765059 - FLAM_A SINE Alu -9 124 1 752 214 101 19 chr3 154759519 154759776 -72764802 - L1M4 LINE L1 -3098 3048 2771 2303 103 0 10 chr3 154760193 154760495 -72764083 - AluSq SINE Alu -14 299 1 2127 129 0 7 chr3 154760495 154760789 -72763789 - AluSx SINE Alu -19 293 1 236 301 55 0 chr3 154760900 154760973 -72763605 + L2 LINE L2 3144 3220 -52 1006 138 40 0 chr3 154761051 154761203 -72763375 - FRAM SINE Alu -20 156 1 26 30 0 0 chr3 154763916 154763949 -72760629 + AT_rich Low_complexity Low_complexity 1 33 0 205 182 0 0 chr3 154764661 154764705 -72759873 + T-rich Low_complexity Low_complexity 2 45 0 734 190 33 0 chr3 154765967 154766088 -72758490 + FLAM_A SINE Alu 1 125 -8 1853 133 19 0 chr3 154766937 154767208 -72757370 - AluJo SINE Alu -36 276 1 2216 98 0 0 chr3 154769746 154770031 -72754547 - AluSx SINE Alu -18 294 10 2241 109 0 3 chr3 154770617 154770911 -72753667 - AluSx SINE Alu -19 293 1 1994 146 0 7 chr3 154770917 154771212 -72753366 - AluSx SINE Alu -19 293 1 335 308 86 26 chr3 154771645 154771762 -72752816 - L2 LINE L2 -4 3268 3145 273 271 71 59 chr3 154771792 154771877 -72752701 + MIR SINE MIR 16 101 -161 728 144 61 72 chr3 154772015 154772195 -72752383 + MER20 DNA MER1_type 3 180 -39 399 300 218 19 chr3 154772206 154772633 -72751945 + L2 LINE L2 2104 2615 -699 218 349 146 10 chr3 154772649 154772841 -72751737 + L2 LINE L2 2866 3083 -189 * 464 309 211 45 chr3 154772815 154773394 -72751184 + L2 LINE L2 2576 3267 -5 203 30 0 61 chr3 154773477 154773510 -72751068 + (TTCA)n Simple_repeat Simple_repeat 3 33 0 1277 164 26 89 chr3 154773510 154773655 -72750923 - AluJb SINE Alu -27 285 167 2329 77 3 10 chr3 154773655 154773953 -72750625 - AluSp SINE Alu -15 298 3 1277 164 26 89 chr3 154773953 154774111 -72750467 - AluJb SINE Alu -145 167 1 439 231 0 109 chr3 154774348 154774504 -72750074 - L2 LINE L2 -3175 139 1 669 154 103 117 chr3 154776655 154776869 -72747709 + MER58C DNA MER1_type 4 214 -1 30739 102 20 58 chr3 154777960 154783296 -72741282 - L1P3 LINE L1 -640 5514 420 194 0 39 0 chr3 154783296 154783322 -72741256 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 30739 102 20 58 chr3 154783322 154783717 -72740861 - L1P3 LINE L1 -5734 420 12 6809 195 27 60 chr3 154783727 154783881 -72740697 - L1P LINE L1 -978 5168 5010 1891 155 3 23 chr3 154783881 154784184 -72740394 - AluSx SINE Alu -15 297 1 6809 195 27 60 chr3 154784184 154784566 -72740012 - L1P LINE L1 -1136 5010 4617 2129 102 0 0 chr3 154784566 154784840 -72739738 - AluSq SINE Alu -39 274 1 6809 195 27 60 chr3 154784840 154786178 -72738400 - L1P LINE L1 -1529 4617 3355 246 266 124 0 chr3 154786653 154786766 -72737812 - L1MCa LINE L1 -4743 1683 1557 893 194 117 1 chr3 154786842 154787124 -72737454 + MER58 DNA MER1_type 1 2419 -1 977 239 68 26 chr3 154788534 154788919 -72735659 - HAL1b LINE L1 -523 825 425 189 0 0 0 chr3 154788926 154788947 -72735631 + (TTTA)n Simple_repeat Simple_repeat 1 21 0 307 301 106 50 chr3 154789004 154789286 -72735292 - HAL1b LINE L1 -996 352 55 234 277 69 10 chr3 154789351 154789452 -72735126 - L1M1 LINE L1 -485 5817 5711 1841 149 0 14 chr3 154789478 154789760 -72734818 - AluJb SINE Alu -34 278 1 352 214 119 0 chr3 154790128 154790212 -72734366 + LTR33 LTR ERVL 4 97 -424 222 37 0 0 chr3 154790235 154790262 -72734316 + (A)n Simple_repeat Simple_repeat 1 27 0 2461 80 0 10 chr3 154790737 154791051 -72733527 - AluSp SINE Alu -2 311 1 2381 103 7 0 chr3 154791701 154792011 -72732567 - AluSx SINE Alu 0 312 1 1423 155 6 115 chr3 154792022 154792345 -72732233 - AluJo SINE Alu -12 290 3 180 374 40 30 chr3 154792449 154792548 -72732030 + L2 LINE L2 2954 3053 -219 2179 93 4 4 chr3 154793084 154793364 -72731214 + AluSp SINE Alu 1 280 -33 252 0 0 0 chr3 154793364 154793392 -72731186 + (CA)n Simple_repeat Simple_repeat 1 28 0 859 141 23 51 chr3 154794616 154794793 -72729785 - L1MB5 LINE L1 -8 6166 5995 678 168 203 28 chr3 154794850 154794993 -72729585 - FAM SINE Alu -6 169 2 2401 96 0 0 chr3 154795046 154795348 -72729230 + AluSx SINE Alu 3 304 -8 244 271 96 56 chr3 154795800 154795966 -72728612 - HAL1 LINE L1 -46 2461 2303 1968 143 0 10 chr3 154795966 154796259 -72728319 + AluSx SINE Alu 1 290 -22 183 100 0 0 chr3 154796259 154796289 -72728289 + (CCAA)n Simple_repeat Simple_repeat 2 31 0 244 271 96 56 chr3 154796289 154796372 -72728206 - HAL1 LINE L1 -203 2304 2201 21 0 0 0 chr3 154796401 154796422 -72728156 + AT_rich Low_complexity Low_complexity 1 21 0 1439 243 112 35 chr3 154796431 154796847 -72727731 - HAL1 LINE L1 -480 2027 1644 1376 138 50 116 chr3 154796847 154796999 -72727579 - AluJo SINE Alu -15 297 175 1960 120 7 36 chr3 154796999 154797300 -72727278 - AluSq SINE Alu -21 292 1 1376 138 50 116 chr3 154797300 154797465 -72727113 - AluJo SINE Alu -137 175 1 1439 243 112 35 chr3 154797465 154797788 -72726790 - HAL1 LINE L1 -863 1644 1231 388 187 4 40 chr3 154797791 154797902 -72726676 + MER33 DNA MER1_type 1 106 -97 276 177 101 0 chr3 154797909 154797988 -72726590 + MER33 DNA MER1_type 262 348 -15 2816 216 100 38 chr3 154798018 154799038 -72725540 - HAL1 LINE L1 -1300 1207 125 1213 191 0 14 chr3 154799358 154799578 -72725000 - AluJo SINE Alu -11 301 85 340 255 124 46 chr3 154800331 154800484 -72724094 + L3 LINE CR1 1402 1566 -11 822 120 0 93 chr3 154800723 154800873 -72723705 - AluSg/x SINE Alu -29 281 146 2167 145 20 0 chr3 154801462 154801820 -72722758 + MER47A DNA MER2_type 2 366 0 475 276 161 9 chr3 154802117 154802334 -72722244 + MIR SINE MIR 11 260 -2 841 277 65 15 chr3 154802721 154803118 -72721460 - L1M4 LINE L1 -2392 3754 3338 433 257 0 7 chr3 154803129 154803281 -72721297 - L1M4 LINE L1 -3224 2922 2772 3440 193 51 37 chr3 154803537 154804469 -72720109 - L1MB8 LINE L1 -45 6133 5216 1806 195 0 0 chr3 154804469 154804766 -72719812 - AluSx SINE Alu -15 297 1 3440 193 51 37 chr3 154804766 154804978 -72719600 - L1MB8 LINE L1 -962 5216 5008 532 103 0 0 chr3 154804978 154805056 -72719522 - MADE1 DNA Mariner -2 78 1 3440 193 51 37 chr3 154805056 154805543 -72719035 - L1MB8 LINE L1 -1170 5008 4490 2108 126 0 7 chr3 154805554 154805847 -72718731 - AluSq SINE Alu -22 291 1 857 132 58 74 chr3 154805848 154806038 -72718540 + MER46A DNA MER2_type 47 233 -3 1515 190 14 24 chr3 154806263 154806558 -72718020 - AluJo SINE Alu -18 294 3 21 0 0 0 chr3 154807407 154807428 -72717150 + AT_rich Low_complexity Low_complexity 1 21 0 2762 227 26 19 chr3 154807808 154808650 -72715928 + L1PA16 LINE L1 5310 6157 -9 28 0 0 0 chr3 154809016 154809044 -72715534 + AT_rich Low_complexity Low_complexity 1 28 0 1808 146 3 43 chr3 154809518 154809632 -72714946 + AluJb SINE Alu 1 118 -194 2621 90 17 3 chr3 154809632 154809989 -72714589 - THE1B LTR MaLR 0 364 3 10679 104 35 7 chr3 154809991 154811528 -72713050 - THE1B-int LTR MaLR 0 1580 1 2694 102 3 0 chr3 154811528 154811891 -72712687 - THE1B LTR MaLR 0 364 1 1808 146 3 43 chr3 154811891 154812073 -72712505 + AluJb SINE Alu 117 289 -23 30 0 0 0 chr3 154812497 154812527 -72712051 + AT_rich Low_complexity Low_complexity 1 30 0 195 328 16 0 chr3 154812994 154813058 -72711520 - L2 LINE L2 -3 3269 3205 245 269 21 0 chr3 154813416 154813509 -72711069 + HAL1 LINE L1 1568 1662 -845 389 269 101 68 chr3 154813510 154813808 -72710770 + L1MEc LINE L1 2171 2444 -3771 2350 102 0 0 chr3 154813808 154814112 -72710466 + AluSg1 SINE Alu 1 304 -5 389 269 101 68 chr3 154814112 154814143 -72710435 + L1MEc LINE L1 2444 2473 -3742 25 0 0 0 chr3 154814164 154814189 -72710389 + AT_rich Low_complexity Low_complexity 1 25 0 304 271 200 0 chr3 154814240 154814395 -72710183 + L1ME4a LINE L1 5772 5957 -164 582 300 87 20 chr3 154814616 154814963 -72709615 + L1MC4a LINE L1 5532 5901 -1907 372 320 8 16 chr3 154815214 154815342 -72709236 + MIR3 SINE MIR 15 141 -67 2172 133 0 0 chr3 154815392 154815692 -72708886 + AluSg SINE Alu 1 300 -10 223 178 67 0 chr3 154816546 154816591 -72707987 + L2 LINE L2 3261 3308 -5 2486 57 3 0 chr3 154818131 154818432 -72706146 - AluY SINE Alu -9 302 1 280 279 238 0 chr3 154818498 154818620 -72705958 + L3 LINE CR1 452 602 -975 515 301 132 50 chr3 154818745 154819087 -72705491 + L3 LINE CR1 1198 1567 -10 235 275 72 14 chr3 154819073 154819142 -72705436 + L2 LINE L2 3147 3219 -53 * 183 273 0 0 chr3 154819137 154819181 -72705397 + L3 LINE CR1 878 921 -656 * 22 103 0 0 chr3 154819363 154819441 -72705137 + AT_rich Low_complexity Low_complexity 1 78 0 1052 252 87 99 chr3 154820823 154821595 -72702983 - L2 LINE L2 -1 3312 2559 1882 166 0 3 chr3 154823520 154823815 -72700763 - AluSx SINE Alu -18 294 1 2395 202 94 31 chr3 154823818 154824566 -72700012 - L1MC4a LINE L1 0 7808 7014 1181 120 0 17 chr3 154824569 154824744 -72699834 - AluSg/x SINE Alu -10 300 129 1287 183 25 84 chr3 154824749 154824891 -72699687 - L1MC4a LINE L1 -821 6987 6838 1680 152 27 0 chr3 154824891 154825154 -72699424 - AluJb SINE Alu -29 283 14 1287 183 25 84 chr3 154825154 154825367 -72699211 - L1MC4a LINE L1 -970 6838 6653 337 99 183 0 chr3 154825357 154825428 -72699150 - L1M2 LINE L1 -484 5807 5724 * 1362 253 31 26 chr3 154825431 154825886 -72698692 - L1MEc LINE L1 -5929 467 11 475 275 117 7 chr3 154825865 154826174 -72698404 - L1M4 LINE L1 -1821 4394 4052 * 2339 159 34 5 chr3 154826229 154826645 -72697933 + MSTA LTR MaLR 1 428 0 663 294 88 5 chr3 154826656 154827088 -72697490 - L1M4 LINE L1 -2309 3906 3439 1656 172 18 4 chr3 154827137 154827410 -72697168 + AluJo SINE Alu 1 277 -35 332 236 89 120 chr3 154827652 154827910 -72696668 - HAL1 LINE L1 -13 2494 2245 7514 25 7 1 chr3 154828685 154830333 -72694245 - L1PA4 LINE L1 -2 6153 4497 2360 92 16 0 chr3 154830365 154830668 -72693910 - AluY SINE Alu -3 308 1 491 311 30 41 chr3 154830777 154831044 -72693534 - HAL1 LINE L1 -679 1828 1565 2399 65 3 26 chr3 154831163 154831471 -72693107 - AluY SINE Alu -10 301 1 1999 124 14 0 chr3 154831479 154831762 -72692816 - AluSx SINE Alu -25 287 1 462 269 128 13 chr3 154831762 154832067 -72692511 - HAL1 LINE L1 -1156 1351 1012 2445 154 61 2 chr3 154832084 154832360 -72692218 - L1MA8 LINE L1 -2 6289 6031 2258 112 94 13 chr3 154832360 154832754 -72691824 - MSTA LTR MaLR -2 426 1 2445 154 61 2 chr3 154832754 154832971 -72691607 - L1MA8 LINE L1 -260 6031 5767 1073 146 5 45 chr3 154832973 154833193 -72691385 - L1PA13 LINE L1 -18 6145 5935 227 317 148 7 chr3 154834326 154834468 -72690110 + L2 LINE L2 2419 2580 -734 1130 120 0 0 chr3 154834570 154834728 -72689850 - AluSq SINE Alu -15 298 141 2154 217 58 21 chr3 154834858 154835479 -72689099 - L1PA13 LINE L1 -4647 2927 2296 2159 96 0 7 chr3 154835487 154835768 -72688810 - AluSq SINE Alu -12 301 23 1847 172 24 0 chr3 154835768 154836058 -72688520 - AluJo SINE Alu -15 297 1 640 277 0 8 chr3 154836526 154836764 -72687814 - L1PA13 LINE L1 -5271 2303 2085 1460 316 59 22 chr3 154836797 154837353 -72687225 - L1PA13 LINE L1 -6209 1365 789 988 152 82 0 chr3 154837365 154837523 -72687055 - FRAM SINE Alu -6 170 1 311 308 17 50 chr3 154837531 154837651 -72686927 + L2 LINE L2 3142 3257 -15 2319 76 0 0 chr3 154838492 154838782 -72685796 - AluY SINE Alu -21 290 1 1707 93 13 4 chr3 154839455 154839692 -72684886 - L1PA10 LINE L1 -10 6158 5920 182 213 33 66 chr3 154839774 154839835 -72684743 - MIR SINE MIR 0 262 204 1835 172 33 0 chr3 154840412 154840714 -72683864 + AluJo SINE Alu 1 312 0 2120 149 0 0 chr3 154841407 154841702 -72682876 - AluSx SINE Alu -17 295 1 1934 140 26 44 chr3 154842208 154842550 -72682028 + MER1B DNA MER1_type 2 337 0 329 232 61 0 chr3 154844297 154844379 -72680199 - MIR SINE MIR -71 191 105 620 266 5 5 chr3 154845167 154845359 -72679219 + L1PBa LINE L1 6 197 -6666 * 7501 148 33 4 chr3 154845356 154847180 -72677398 + L1PBa LINE L1 1392 3310 -3552 3409 112 30 12 chr3 154847303 154847507 -72677071 + L1PB1 LINE L1 5577 5776 -375 189 0 0 0 chr3 154847507 154847528 -72677050 + (TG)n Simple_repeat Simple_repeat 2 22 0 483 63 0 0 chr3 154847528 154847591 -72676987 + (CATA)n Simple_repeat Simple_repeat 2 64 0 3409 112 30 12 chr3 154847591 154847947 -72676631 + L1PB1 LINE L1 5775 6148 -3 1880 166 0 20 chr3 154848128 154848424 -72676154 - AluJo SINE Alu -22 290 1 2199 73 0 0 chr3 154849225 154849524 -72675054 + AluSp SINE Alu 25 323 0 398 290 35 14 chr3 154849541 154849686 -72674892 - L3 LINE CR1 -714 863 716 293 277 177 15 chr3 154849797 154849927 -72674651 + MIR3 SINE MIR 17 167 -41 678 318 56 0 chr3 154850880 154851113 -72673465 + L3 LINE CR1 1299 1544 -33 24 0 0 0 chr3 154851688 154851712 -72672866 + AT_rich Low_complexity Low_complexity 1 24 0 7198 194 3 45 chr3 154853117 154853387 -72671191 + L1 LINE L1 2768 3048 -3098 2205 123 0 3 chr3 154853387 154853697 -72670881 + AluSc SINE Alu 1 309 0 7198 194 3 45 chr3 154853697 154854888 -72669690 + L1 LINE L1 3048 4135 -2011 2443 73 0 22 chr3 154854888 154855203 -72669375 + AluY SINE Alu 1 308 -3 7198 194 3 45 chr3 154855203 154855614 -72668964 + L1 LINE L1 4135 4562 -1584 288 0 0 0 chr3 154856537 154856569 -72668009 + (CAAAA)n Simple_repeat Simple_repeat 1 32 0 21 0 0 0 chr3 154857229 154857250 -72667328 + AT_rich Low_complexity Low_complexity 1 21 0 195 312 83 46 chr3 154859437 154859546 -72665032 - L2 LINE L2 0 3272 3160 1993 150 0 0 chr3 154861272 154861565 -72663013 - AluJb SINE Alu -19 293 1 580 71 3 0 chr3 154862001 154862093 -72662485 + L1M3 LINE L1 5670 5763 -417 607 69 241 17 chr3 154862166 154862282 -72662296 + L1PBa LINE L1 2204 2345 -4518 1059 223 91 33 chr3 154862384 154862869 -72661709 - L1M4 LINE L1 -3204 2942 2430 27 0 0 0 chr3 154863462 154863489 -72661089 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr3 154863645 154863666 -72660912 + AT_rich Low_complexity Low_complexity 1 21 0 412 214 168 8 chr3 154863770 154863901 -72660677 + MIR SINE MIR 91 242 -20 983 226 21 46 chr3 154863971 154864210 -72660368 - MER8 DNA MER2_type 0 239 7 818 219 7 7 chr3 154864236 154864391 -72660187 - FRAM SINE Alu -11 155 1 275 284 60 43 chr3 154864740 154864972 -72659606 - HAL1 LINE L1 -1369 1138 903 * 5360 123 18 17 chr3 154864960 154865965 -72658613 - L1PA16 LINE L1 0 6166 5162 2107 126 0 3 chr3 154865967 154866260 -72658318 - AluSx SINE Alu -20 292 1 1993 79 235 24 chr3 154866266 154866644 -72657934 - L1PA8 LINE L1 -5 6167 5710 697 176 30 0 chr3 154866749 154866880 -72657698 - MER46B DNA MER2_type -201 35 26 326 325 45 58 chr3 154867102 154867345 -72657233 - L1ME3A LINE L1 -100 6070 5831 323 255 78 10 chr3 154867563 154867665 -72656913 + MLT1I LTR MaLR 244 352 -57 199 256 108 78 chr3 154868110 154868239 -72656339 - MIR SINE MIR -110 152 20 23 78 0 0 chr3 154870636 154870687 -72653891 + AT_rich Low_complexity Low_complexity 1 51 0 22 56 0 0 chr3 154870872 154870908 -72653670 + AT_rich Low_complexity Low_complexity 1 36 0 826 289 158 19 chr3 154871587 154872005 -72652573 - L2 LINE L2 0 3313 2838 1154 67 0 7 chr3 154872009 154872158 -72652420 + AluSg/x SINE Alu 156 303 -9 591 259 162 15 chr3 154872569 154872766 -72651812 + MIR SINE MIR 37 262 0 396 296 126 20 chr3 154873149 154873592 -72650986 - L1ME3A LINE L1 -313 5808 5319 872 342 180 34 chr3 154873593 154875166 -72649412 - L2 LINE L2 -189 3083 1278 272 256 0 67 chr3 154875298 154875388 -72649190 - L3 LINE CR1 -919 658 575 500 228 16 16 chr3 154875734 154875861 -72648717 + HsTC2 DNA Tc2 4 130 -1768 1082 207 121 42 chr3 154875873 154876156 -72648422 + HsTC2 DNA Tc2 1258 1517 -381 2066 126 0 55 chr3 154876156 154876481 -72648097 + AluSx SINE Alu 1 307 -5 1082 207 121 42 chr3 154876481 154876603 -72647975 + HsTC2 DNA Tc2 1517 1871 -27 208 154 26 0 chr3 154876856 154876895 -72647683 - L2 LINE L2 -5 3308 3269 408 286 70 22 chr3 154877351 154877578 -72647000 + HAL1 LINE L1 238 475 -2032 415 221 0 12 chr3 154877746 154877832 -72646746 + HAL1 LINE L1 742 826 -1681 2691 191 90 72 chr3 154877852 154878925 -72645653 - L1ME2 LINE L1 -17 6147 5056 458 333 150 6 chr3 154878948 154879275 -72645303 + L2 LINE L2 1997 2370 -944 34 0 0 0 chr3 154879856 154879890 -72644688 + AT_rich Low_complexity Low_complexity 1 34 0 285 228 221 7 chr3 154880117 154880253 -72644325 + MIR3 SINE MIR 9 173 -35 319 239 141 98 chr3 154881871 154882105 -72642473 - L1ME4a LINE L1 -9 6112 5869 318 288 63 26 chr3 154882914 154883105 -72641473 + L1MC4a LINE L1 7218 7415 -393 311 265 77 0 chr3 154883095 154883212 -72641366 + L1MC5 LINE L1 7317 7442 -519 * 3469 215 131 129 chr3 154883233 154884031 -72640547 - L2 LINE L2 -327 2986 2191 562 167 28 9 chr3 154884031 154884139 -72640439 + MER3 DNA MER1_type 3 112 -97 285 222 0 0 chr3 154884142 154884196 -72640382 - MER3 DNA MER1_type -119 90 37 3469 215 131 129 chr3 154884196 154884259 -72640319 - L2 LINE L2 -1123 2190 2129 1985 203 38 61 chr3 154884259 154884787 -72639791 + LTR40a LTR ERVL 4 519 0 3469 215 131 129 chr3 154884787 154885632 -72638946 - L2 LINE L2 -1184 2129 1018 897 400 125 50 chr3 154885631 154886174 -72638404 + L2 LINE L2 229 812 -2502 * 751 130 7 7 chr3 154886443 154886581 -72637997 + (GA)n Simple_repeat Simple_repeat 1 138 0 1956 134 64 19 chr3 154886705 154886774 -72637804 - THE1C LTR MaLR 0 375 311 2229 117 22 35 chr3 154886774 154887143 -72637435 + THE1B LTR MaLR 1 364 0 1956 134 64 19 chr3 154887143 154887432 -72637146 - THE1C LTR MaLR -64 311 1 449 286 118 0 chr3 154887432 154887593 -72636985 - MIR SINE MIR -36 226 47 256 177 32 32 chr3 154887731 154887793 -72636785 + GA-rich Low_complexity Low_complexity 4 65 0 189 346 25 0 chr3 154888534 154888615 -72635963 + L2 LINE L2 3230 3312 -1 782 267 102 54 chr3 154889736 154890309 -72634269 + L2 LINE L2 2503 3293 -20 2257 97 21 0 chr3 154892499 154892788 -72631790 - AluSx SINE Alu -17 295 1 420 131 131 0 chr3 154893746 154893830 -72630748 - L1MD3 LINE L1 -8 7987 7893 2076 128 3 10 chr3 154893884 154894196 -72630382 + AluSx SINE Alu 1 310 -2 22 0 0 0 chr3 154894511 154894533 -72630045 + AT_rich Low_complexity Low_complexity 1 22 0 34 24 0 0 chr3 154894768 154894809 -72629769 + AT_rich Low_complexity Low_complexity 1 41 0 334 257 105 13 chr3 154895141 154895293 -72629285 + L1ME LINE L1 5106 5271 -875 750 325 99 7 chr3 154895397 154895812 -72628766 - MLT1J LTR MaLR -56 455 3 353 203 148 23 chr3 154895820 154895948 -72628630 + L1ME LINE L1 5337 5480 -2328 460 271 70 12 chr3 154896054 154896264 -72628314 + L1ME LINE L1 5547 5762 -359 247 162 81 27 chr3 154896269 154896343 -72628235 + L2 LINE L2 3107 3184 -129 626 272 253 8 chr3 154897262 154897527 -72627051 - L2 LINE L2 -374 2940 2611 1652 223 65 29 chr3 154897540 154897988 -72626590 - L2 LINE L2 -1064 2250 1787 360 257 0 0 chr3 154898048 154898118 -72626460 + L2 LINE L2 3198 3267 -5 322 279 184 19 chr3 154898541 154898699 -72625879 - MIR SINE MIR 0 262 79 4709 151 51 14 chr3 154898700 154899896 -72624682 + L1MB5 LINE L1 4902 6143 -31 339 284 118 31 chr3 154901176 154901405 -72623173 + L2 LINE L2 1759 2007 -1307 718 318 102 41 chr3 154901608 154901710 -72622868 + L2 LINE L2 2045 2139 -1175 349 222 148 49 chr3 154901710 154901872 -72622706 + MER5B DNA MER1_type 1 178 0 718 318 102 41 chr3 154901872 154901893 -72622685 + L2 LINE L2 2139 2157 -1157 850 221 96 78 chr3 154901893 154902228 -72622350 - MER102b DNA MER1_type 0 341 1 718 318 102 41 chr3 154902228 154902733 -72621845 + L2 LINE L2 2157 2712 -602 214 296 14 0 chr3 154902736 154902807 -72621771 + (TA)n Simple_repeat Simple_repeat 1 72 0 939 227 147 3 chr3 154902807 154903093 -72621485 + L1MC4a LINE L1 5614 5940 -1868 214 240 146 42 chr3 154903206 154903302 -72621276 - MER5B DNA MER1_type -72 106 1 503 309 66 81 chr3 154903363 154903758 -72620820 + L2 LINE L2 2882 3270 -2 1015 229 5 22 chr3 154903849 154904072 -72620506 + MER20 DNA MER1_type 1 219 0 1081 235 114 0 chr3 154905762 154906026 -72618552 - MER119 DNA MER1_type -285 298 5 2425 77 3 0 chr3 154906081 154906391 -72618187 - AluY SINE Alu 0 311 1 568 259 164 60 chr3 154906391 154906739 -72617839 + L1ME4a LINE L1 5677 6060 -61 275 356 81 31 chr3 154907282 154907442 -72617136 + L2 LINE L2 3103 3270 -2 1848 163 0 7 chr3 154907993 154908287 -72616291 + AluJb SINE Alu 1 292 -20 22 0 0 0 chr3 154908719 154908741 -72615837 + AT_rich Low_complexity Low_complexity 1 22 0 522 284 123 13 chr3 154908896 154909051 -72615527 - L2 LINE L2 0 3272 3101 2278 70 3 14 chr3 154909593 154909879 -72614699 + AluY SINE Alu 16 298 -13 1773 154 18 4 chr3 154910016 154910333 -72614245 - AluJb SINE Alu 0 321 1 430 218 0 11 chr3 154910450 154910537 -72614041 + MIR SINE MIR 75 160 -102 2219 125 0 0 chr3 154910540 154910836 -72613742 + AluSq SINE Alu 1 296 -17 718 197 113 0 chr3 154910836 154910978 -72613600 + AluJb SINE Alu 134 291 -21 975 174 46 15 chr3 154910978 154911173 -72613405 - MIR SINE MIR -57 205 5 778 301 68 27 chr3 154911174 154911543 -72613035 - L2 LINE L2 -900 2414 2031 2339 100 3 0 chr3 154911707 154912016 -72612562 - AluSx SINE Alu -2 310 1 691 117 31 47 chr3 154912487 154912615 -72611963 + FLAM_C SINE Alu 9 134 -9 1001 235 46 111 chr3 154912777 154913249 -72611329 - MLT1J LTR MaLR -6 505 71 2287 98 3 0 chr3 154913249 154913546 -72611032 - AluSg SINE Alu -12 298 1 1001 235 46 111 chr3 154913546 154913613 -72610965 - MLT1J LTR MaLR -440 71 1 2029 101 0 104 chr3 154914014 154914359 -72610219 + AluSg SINE Alu 1 309 -1 926 163 4 116 chr3 154914359 154914439 -72610139 + MER115 DNA AcHobo 487 574 -119 2027 136 0 7 chr3 154914439 154914741 -72609837 - AluSx SINE Alu -12 300 1 926 163 4 116 chr3 154914741 154914893 -72609685 + MER115 DNA AcHobo 574 693 0 2045 132 0 17 chr3 154915805 154915937 -72608641 + AluSx SINE Alu 5 138 -174 2241 93 26 3 chr3 154915937 154916239 -72608339 + AluSx SINE Alu 1 309 -3 2045 132 0 17 chr3 154916239 154916402 -72608176 + AluSx SINE Alu 138 295 -17 771 165 0 0 chr3 154916518 154916645 -72607933 - FLAM_C SINE Alu -16 127 1 2292 111 0 0 chr3 154916655 154916953 -72607625 - AluSx SINE Alu -14 298 1 1004 159 0 0 chr3 154917104 154917286 -72607292 - AluSg/x SINE Alu 0 315 134 2327 95 3 3 chr3 154917286 154917592 -72606986 - AluSx SINE Alu -6 306 1 316 322 75 48 chr3 154917592 154917927 -72606651 + L2 LINE L2 2130 2473 -841 1055 187 32 61 chr3 154918045 154918133 -72606445 - MER8 DNA MER2_type 0 239 150 2415 80 0 0 chr3 154918133 154918434 -72606144 + AluY SINE Alu 1 301 -10 1055 187 32 61 chr3 154918434 154918591 -72605987 - MER8 DNA MER2_type -89 150 1 338 248 52 13 chr3 154918601 154918754 -72605824 - L1ME4a LINE L1 -139 5982 5824 1339 138 97 127 chr3 154918759 154919223 -72605355 - LTR7 LTR ERV1 0 450 1 2594 139 9 9 chr3 154919223 154919654 -72604924 - HERVH LTR ERV1 0 7713 7283 7084 134 10 5 chr3 154919666 154921380 -72603198 - HERVH LTR ERV1 -1840 5251 3357 * 7477 186 18 50 chr3 154921373 154921920 -72602658 - HERVH LTR ERV1 -3576 3078 2515 2240 98 0 0 chr3 154921920 154922217 -72602361 + AluY SINE Alu 1 297 -14 7477 186 18 50 chr3 154922217 154924122 -72600456 - HERVH LTR ERV1 -4139 2515 801 1857 180 101 28 chr3 154924176 154924604 -72599974 - HERVH LTR ERV1 -7254 459 1 1239 167 121 74 chr3 154924604 154925034 -72599544 - LTR7 LTR ERV1 0 450 1 1026 150 64 0 chr3 154925034 154925207 -72599371 + MER5A DNA MER1_type 6 189 0 2307 74 0 3 chr3 154925220 154925518 -72599060 - AluY SINE Alu -14 297 1 315 264 11 11 chr3 154925522 154925613 -72598965 - L1ME4a LINE L1 -296 5825 5735 44632 37 5 4 chr3 154925627 154931761 -72592817 + L1PA3 LINE L1 14 6155 0 2159 107 0 19 chr3 154931786 154932104 -72592474 + AluSp SINE Alu 1 312 -1 1906 153 0 0 chr3 154932201 154932502 -72592076 - AluSx SINE Alu -11 301 1 555 251 89 116 chr3 154932758 154933310 -72591268 - L2 LINE L2 0 3313 2782 1995 136 0 0 chr3 154933310 154933604 -72590974 + AluSx SINE Alu 1 294 -18 555 251 89 116 chr3 154933604 154933649 -72590929 - L2 LINE L2 -531 2782 2737 908 182 0 0 chr3 154933666 154933825 -72590753 + AluJb SINE Alu 131 289 -23 363 197 27 158 chr3 154933961 154934092 -72590486 - L2 LINE L2 -1219 2095 1993 1752 154 3 43 chr3 154934092 154934417 -72590161 + AluJb SINE Alu 1 312 0 363 197 27 158 chr3 154934417 154934468 -72590110 - L2 LINE L2 -1321 1993 1937 1507 241 44 51 chr3 154934780 154935146 -72589432 + LTR16B LTR ERVL 1 365 -99 2258 88 0 7 chr3 154935146 154935453 -72589125 - AluSx SINE Alu -7 305 1 1507 241 44 51 chr3 154935453 154935514 -72589064 + LTR16B LTR ERVL 365 425 -39 1042 334 30 26 chr3 154935536 154936039 -72588539 + HERV16 LTR ERVL 3 507 -4489 1855 140 29 13 chr3 154936357 154936492 -72588086 + AluJb SINE Alu 1 132 -180 2157 120 3 0 chr3 154936492 154936801 -72587777 + AluSg SINE Alu 1 310 0 1855 140 29 13 chr3 154936801 154936972 -72587606 + AluJb SINE Alu 132 312 0 903 267 80 75 chr3 154937028 154937422 -72587156 + HERV16 LTR ERVL 4505 4903 -93 1321 132 123 134 chr3 154937422 154937892 -72586686 + MER4C LTR ERV1 1 465 0 903 267 80 75 chr3 154937892 154937987 -72586591 + HERV16 LTR ERVL 4903 4996 0 1082 258 68 63 chr3 154937987 154938014 -72586564 + LTR16B LTR ERVL 1 26 -438 2361 79 0 0 chr3 154938014 154938319 -72586259 + AluY SINE Alu 1 305 -6 1082 258 68 63 chr3 154938319 154938749 -72585829 + LTR16B LTR ERVL 26 460 -4 585 274 59 27 chr3 154939403 154939589 -72584989 + MLT1J2 LTR MaLR 259 450 0 2048 89 6 54 chr3 154939999 154940314 -72584264 - AluSx SINE Alu -12 300 1 380 318 100 29 chr3 154940323 154940493 -72584085 - MIR SINE MIR -13 249 68 240 253 58 11 chr3 154940838 154940925 -72583653 + LTR16B LTR ERVL 244 334 -130 1915 122 35 0 chr3 154940999 154941287 -72583291 - AluSx SINE Alu -14 298 1 275 148 19 0 chr3 154941288 154941342 -72583236 + Zaphod DNA AcHobo 3880 3934 -97 204 357 89 0 chr3 154941573 154941685 -72582893 - L2 LINE L2 -23 3290 3169 814 214 40 0 chr3 154942259 154942432 -72582146 - AluJo SINE Alu 0 312 133 1691 184 3 3 chr3 154942505 154942798 -72581780 + AluJb SINE Alu 1 293 -19 314 237 123 18 chr3 154942811 154942925 -72581653 - AluJo SINE Alu -172 130 5 1523 230 43 50 chr3 154943744 154943928 -72580650 + MLT1C LTR MaLR 6 190 -277 2255 107 0 0 chr3 154943928 154944237 -72580341 + AluSc SINE Alu 1 309 0 1523 230 43 50 chr3 154944237 154944513 -72580065 + MLT1C LTR MaLR 190 463 -4 1269 86 0 11 chr3 154945259 154945434 -72579144 - AluY SINE Alu -138 173 1 1763 161 7 10 chr3 154945540 154945844 -72578734 - AluJo SINE Alu -9 303 1 1040 191 5 27 chr3 154945951 154946004 -72578574 + AluJb SINE Alu 86 139 -173 1845 142 13 10 chr3 154946004 154946306 -72578272 + AluSx SINE Alu 1 303 -9 1040 191 5 27 chr3 154946306 154946472 -72578106 + AluJb SINE Alu 139 300 -12 249 33 0 0 chr3 154946515 154946545 -72578033 + (CA)n Simple_repeat Simple_repeat 2 31 0 1052 155 6 6 chr3 154946574 154946755 -72577823 + AluJo SINE Alu 118 298 -14 587 268 22 51 chr3 154946860 154947175 -72577403 + LTR16B LTR ERVL 34 394 -70 2060 100 7 0 chr3 154947175 154947479 -72577099 - AluSx SINE Alu 0 306 1 587 268 22 51 chr3 154947479 154947545 -72577033 + LTR16B LTR ERVL 394 460 -4 648 209 126 52 chr3 154947788 154947856 -72576722 - MIR SINE MIR -10 252 190 2003 112 0 11 chr3 154947856 154948166 -72576412 + AluSx SINE Alu 1 307 0 648 209 126 52 chr3 154948166 154948326 -72576252 - MIR SINE MIR -72 190 6 293 247 167 14 chr3 154948337 154948482 -72576096 - MIR SINE MIR -21 187 21 402 294 85 26 chr3 154949008 154949161 -72575417 - L2 LINE L2 -4 3268 3107 221 170 21 21 chr3 154949691 154949738 -72574840 + L2 LINE L2 3263 3309 -4 911 184 20 56 chr3 154949948 154950117 -72574461 - MER5A DNA MER1_type 0 189 26 1901 166 69 64 chr3 154950117 154950598 -72573980 + MER31A LTR ERV1 1 483 -2 911 184 20 56 chr3 154950598 154950624 -72573954 - MER5A DNA MER1_type -163 26 1 1395 145 74 0 chr3 154950718 154950960 -72573618 - AluJb SINE Alu -10 302 43 299 254 377 0 chr3 154950970 154951092 -72573486 + MIR SINE MIR 90 257 -5 1974 121 3 16 chr3 154952891 154953196 -72571382 - AluSq SINE Alu -12 301 1 416 239 61 80 chr3 154953215 154953275 -72571303 - L1ME LINE L1 -451 5670 5610 1758 117 45 0 chr3 154953275 154953539 -72571039 - AluSx SINE Alu -14 298 23 1436 130 120 29 chr3 154953541 154953817 -72570761 - AluJo SINE Alu -11 301 1 416 239 61 80 chr3 154953817 154953916 -72570662 - L1ME LINE L1 -512 5609 5511 2265 95 0 0 chr3 154954097 154954403 -72570175 - AluY SINE Alu -5 306 1 1766 140 4 0 chr3 154954405 154954676 -72569902 - AluSx SINE Alu -18 294 23 825 139 8 0 chr3 154954678 154954807 -72569771 - AluJb SINE Alu -6 306 177 198 0 0 0 chr3 154954818 154954840 -72569738 + (TTTTA)n Simple_repeat Simple_repeat 2 23 0 819 126 8 0 chr3 154954840 154954959 -72569619 - FLAM_C SINE Alu -21 122 3 315 285 49 111 chr3 154954962 154955106 -72569472 - L1ME LINE L1 -507 5614 5480 2051 120 0 7 chr3 154955225 154955533 -72569045 - AluY SINE Alu -5 306 1 1932 135 10 10 chr3 154955533 154955844 -72568734 - AluSx SINE Alu 0 312 1 2055 92 14 7 chr3 154955892 154956187 -72568391 - AluSp SINE Alu -16 297 1 931 161 0 0 chr3 154957107 154957256 -72567322 - AluSq/x SINE Alu -164 149 1 1749 206 52 25 chr3 154958114 154958555 -72566023 + MLT1D LTR MaLR 53 505 0 2112 104 14 0 chr3 154958668 154958965 -72565613 + AluSx SINE Alu 1 301 -11 247 294 248 35 chr3 154959569 154960082 -72564496 - HAL1 LINE L1 -1837 670 49 1960 127 7 0 chr3 154960198 154960482 -72564096 + AluSx SINE Alu 1 286 -26 1844 132 3 3 chr3 154960776 154961064 -72563514 - AluSx SINE Alu -22 290 3 1639 165 0 14 chr3 154961072 154961392 -72563186 - AluJb SINE Alu 0 316 1 180 313 0 45 chr3 154961603 154961670 -72562908 - L2 LINE L2 -21 3251 3188 1577 215 124 0 chr3 154961686 154962104 -72562474 - Charlie4a DNA MER1_type -1 507 38 253 322 203 13 chr3 154962298 154962451 -72562127 + MIR SINE MIR 32 212 -50 368 206 191 15 chr3 154963449 154963585 -72560993 - HAL1b LINE L1 0 1348 1189 2278 84 0 0 chr3 154963969 154964267 -72560311 - AluSg SINE Alu -12 298 1 1570 170 13 31 chr3 154964269 154964586 -72559992 - AluJb SINE Alu -1 311 1 1038 201 12 87 chr3 154964715 154964746 -72559832 - L1MC4 LINE L1 0 8042 8010 2068 138 0 0 chr3 154964746 154965042 -72559536 + AluSx SINE Alu 3 298 -14 1038 201 12 87 chr3 154965042 154965354 -72559224 - L1MC4 LINE L1 -32 8010 7725 216 158 0 0 chr3 154965438 154965476 -72559102 + (TA)n Simple_repeat Simple_repeat 2 39 0 502 219 61 0 chr3 154965487 154965601 -72558977 - L1MC4 LINE L1 -370 7672 7552 2294 82 0 7 chr3 154965606 154965910 -72558668 + AluY SINE Alu 1 302 -9 2232 86 0 0 chr3 154965928 154966218 -72558360 + AluSg1 SINE Alu 1 290 -19 499 241 56 12 chr3 154966220 154966382 -72558196 - L1MB7 LINE L1 -13 6171 6003 1526 232 39 22 chr3 154966427 154966837 -72557741 - L1ME1 LINE L1 -272 5894 5478 2391 66 0 10 chr3 154966837 154967142 -72557436 - AluY SINE Alu -9 302 1 2066 125 0 0 chr3 154967146 154967443 -72557135 - AluSx SINE Alu -15 297 1 988 158 0 0 chr3 154967447 154967599 -72556979 - AluJb SINE Alu -23 289 138 1449 137 97 51 chr3 154967603 154967888 -72556690 - L1ME1 LINE L1 -701 5483 5213 1925 142 6 6 chr3 154967888 154968199 -72556379 - AluSx SINE Alu -1 311 1 1521 158 37 30 chr3 154968201 154968499 -72556079 - AluJo SINE Alu -12 300 1 1510 194 3 10 chr3 154968508 154968801 -72555777 - AluJb SINE Alu -21 291 1 1449 137 97 51 chr3 154968801 154968954 -72555624 - L1ME1 LINE L1 -978 5206 5017 523 93 0 0 chr3 154968957 154969032 -72555546 - AluSp/q SINE Alu -9 304 230 303 28 0 0 chr3 154969064 154969100 -72555478 + (TG)n Simple_repeat Simple_repeat 2 37 0 483 107 0 0 chr3 154969102 154969177 -72555401 + (TA)n Simple_repeat Simple_repeat 2 76 0 1182 182 113 4 chr3 154969203 154969478 -72555100 - L1ME1 LINE L1 -1136 5010 4706 806 108 0 0 chr3 154969480 154969591 -72554987 - AluSg/x SINE Alu -14 296 186 396 186 104 21 chr3 154969936 154970118 -72554460 + L1P5 LINE L1 5293 5490 -664 1992 124 3 3 chr3 154970118 154970416 -72554162 + AluSx SINE Alu 1 298 -14 1075 192 112 7 chr3 154970418 154970694 -72553884 + L1ME1 LINE L1 4706 5010 -1136 483 107 0 0 chr3 154970720 154970795 -72553783 + (TA)n Simple_repeat Simple_repeat 2 76 0 303 28 0 0 chr3 154970797 154970833 -72553745 + (CA)n Simple_repeat Simple_repeat 2 37 0 523 93 0 0 chr3 154970865 154970940 -72553638 + AluSp/q SINE Alu 230 304 -9 1413 138 95 52 chr3 154970955 154971096 -72553482 + L1ME1 LINE L1 5031 5164 -1014 1510 194 3 10 chr3 154971096 154971389 -72553189 + AluJb SINE Alu 1 291 -21 1521 158 37 30 chr3 154971398 154971696 -72552882 + AluJo SINE Alu 1 300 -12 1925 142 6 6 chr3 154971698 154972009 -72552569 + AluSx SINE Alu 1 311 -1 1413 138 95 52 chr3 154972009 154972293 -72552285 + L1ME1 LINE L1 5171 5482 -696 988 158 0 0 chr3 154972298 154972450 -72552128 + AluJb SINE Alu 138 289 -23 2066 125 0 0 chr3 154972454 154972751 -72551827 + AluSx SINE Alu 1 297 -15 2391 66 0 10 chr3 154972755 154973060 -72551518 + AluY SINE Alu 1 302 -9 1407 217 57 27 chr3 154973060 154973465 -72551113 + L1ME1 LINE L1 5478 5894 -272 499 252 64 13 chr3 154973457 154973673 -72550905 + L1MB7 LINE L1 5939 6171 -8 * 2232 86 0 0 chr3 154973674 154973964 -72550614 - AluSg1 SINE Alu -19 290 1 2104 75 0 0 chr3 154973982 154974248 -72550330 - AluSc SINE Alu -11 298 33 1311 226 112 77 chr3 154974248 154974820 -72549758 - L1MC4 LINE L1 -1105 6937 6346 237 65 0 0 chr3 154975232 154975263 -72549315 + (T)n Simple_repeat Simple_repeat 1 31 0 300 274 0 55 chr3 154976085 154976158 -72548420 - MIR SINE MIR -173 89 21 249 333 70 32 chr3 154976289 154976445 -72548133 - L3 LINE CR1 -43 1534 1373 1720 147 11 4 chr3 154977024 154977303 -72547275 + AluSx SINE Alu 1 281 -31 999 163 4 116 chr3 154978594 154978746 -72545832 - MER115 DNA AcHobo 0 693 574 1928 139 0 3 chr3 154978746 154979047 -72545531 + AluSx SINE Alu 1 300 -12 999 163 4 116 chr3 154979047 154979127 -72545451 - MER115 DNA AcHobo -119 574 487 1787 101 0 110 chr3 154979148 154979474 -72545104 - AluSg SINE Alu -20 290 1 320 258 0 0 chr3 154979876 154979942 -72544636 + MLT1J LTR MaLR 1 66 -445 1800 158 0 19 chr3 154979943 154980259 -72544319 + AluJo SINE Alu 1 310 -2 2017 123 0 7 chr3 154980259 154980566 -72544012 + AluY SINE Alu 1 306 -5 315 285 49 111 chr3 154980685 154980829 -72543749 + L1ME LINE L1 5480 5614 -507 819 126 8 0 chr3 154980832 154980951 -72543627 + FLAM_C SINE Alu 3 122 -21 198 0 0 0 chr3 154980951 154980973 -72543605 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 825 139 8 0 chr3 154980984 154981113 -72543465 + AluJb SINE Alu 177 306 -6 1810 140 0 0 chr3 154981115 154981387 -72543191 + AluSx SINE Alu 23 294 -18 2265 95 0 0 chr3 154981389 154981695 -72542883 + AluY SINE Alu 1 306 -5 397 239 61 80 chr3 154981876 154981975 -72542603 + L1ME LINE L1 5511 5610 -511 1436 130 120 29 chr3 154981975 154982251 -72542327 + AluJo SINE Alu 1 301 -11 1758 117 45 0 chr3 154982253 154982517 -72542061 + AluSx SINE Alu 23 298 -14 397 239 61 80 chr3 154982517 154982577 -72542001 + L1ME LINE L1 5611 5670 -451 1974 121 3 16 chr3 154982596 154982901 -72541677 + AluSq SINE Alu 1 301 -12 299 254 377 0 chr3 154984699 154984821 -72539757 - MIR SINE MIR -5 257 90 1395 145 74 0 chr3 154984831 154985073 -72539505 + AluJb SINE Alu 43 302 -10 911 184 20 56 chr3 154985167 154985193 -72539385 + MER5A DNA MER1_type 1 26 -163 1901 166 69 64 chr3 154985193 154985674 -72538904 - MER31A LTR ERV1 -2 483 1 911 184 20 56 chr3 154985674 154985843 -72538735 + MER5A DNA MER1_type 26 189 0 221 170 21 21 chr3 154986053 154986100 -72538478 - L2 LINE L2 -4 3309 3263 402 294 85 26 chr3 154986630 154986783 -72537795 + L2 LINE L2 3107 3268 -4 293 247 167 14 chr3 154987309 154987454 -72537124 + MIR SINE MIR 21 187 -21 648 209 126 52 chr3 154987465 154987625 -72536953 + MIR SINE MIR 6 190 -72 2002 112 0 11 chr3 154987625 154987935 -72536643 - AluSx SINE Alu 0 307 1 648 209 126 52 chr3 154987935 154988003 -72536575 + MIR SINE MIR 190 252 -10 250 288 0 0 chr3 154988246 154988312 -72536266 - LTR16B LTR ERVL -4 460 395 2078 109 10 3 chr3 154988312 154988616 -72535962 + AluSx SINE Alu 1 306 -6 935 166 0 0 chr3 154988616 154988798 -72535780 + AluSg/x SINE Alu 134 315 0 2172 111 0 0 chr3 154988950 154989248 -72535330 + AluSx SINE Alu 1 298 -14 755 153 16 0 chr3 154989259 154989383 -72535195 + FLAM_C SINE Alu 2 127 -16 1298 137 0 23 chr3 154989499 154989662 -72534916 - AluSg/x SINE Alu -17 293 135 1651 146 30 7 chr3 154989662 154989964 -72534614 - AluSx SINE Alu -3 309 1 1298 137 0 23 chr3 154989964 154990019 -72534559 - AluSg/x SINE Alu -175 135 80 392 263 91 0 chr3 154990133 154990232 -72534346 - MER119 DNA MER1_type -471 112 5 2328 77 3 0 chr3 154990287 154990597 -72533981 - AluY SINE Alu 0 311 1 266 244 172 69 chr3 154990597 154990945 -72533633 + L1ME4a LINE L1 5677 6060 -61 262 356 81 31 chr3 154991488 154991648 -72532930 + L2 LINE L2 3103 3270 -2 1751 163 0 7 chr3 154992199 154992493 -72532085 + AluJb SINE Alu 1 292 -20 22 0 0 0 chr3 154992925 154992947 -72531631 + AT_rich Low_complexity Low_complexity 1 22 0 519 284 123 13 chr3 154993102 154993257 -72531321 - L2 LINE L2 0 3272 3101 2174 70 3 14 chr3 154993799 154994085 -72530493 + AluY SINE Alu 16 298 -13 1625 154 21 4 chr3 154994222 154994538 -72530040 - AluJb SINE Alu 0 321 1 429 218 0 11 chr3 154994655 154994742 -72529836 + MIR SINE MIR 75 160 -102 2101 125 0 0 chr3 154994745 154995041 -72529537 + AluSq SINE Alu 1 296 -17 716 197 113 0 chr3 154995041 154995183 -72529395 + AluJb SINE Alu 134 291 -21 978 174 46 15 chr3 154995183 154995378 -72529200 - MIR SINE MIR -57 205 5 796 301 68 27 chr3 154995379 154995748 -72528830 - L2 LINE L2 -900 2414 2031 2236 100 3 0 chr3 154995912 154996221 -72528357 - AluSx SINE Alu -2 310 1 705 117 31 47 chr3 154996692 154996820 -72527758 + FLAM_C SINE Alu 9 134 -9 1060 239 47 85 chr3 154996982 154997404 -72527174 - MLT1J LTR MaLR -6 505 100 2291 88 0 3 chr3 154997448 154997753 -72526825 - AluSg SINE Alu -6 304 1 200 167 0 0 chr3 154997794 154997824 -72526754 + L2 LINE L2 3262 3291 -22 1153 154 127 41 chr3 154998376 154998643 -72525935 - AluJo SINE Alu -9 303 14 926 201 0 0 chr3 154998847 154999016 -72525562 - AluSg/x SINE Alu -18 294 126 2285 67 7 0 chr3 154999197 154999497 -72525081 - AluY SINE Alu -9 302 1 1038 156 4 108 chr3 154999616 154999866 -72524712 - AluJb SINE Alu -5 307 84 957 172 123 5 chr3 155000191 155000395 -72524183 - AluJo SINE Alu -9 303 76 358 279 54 93 chr3 155000533 155000813 -72523765 + L2 LINE L2 2379 2647 -667 1983 112 0 0 chr3 155000840 155001116 -72523462 + AluSx SINE Alu 33 308 -4 534 241 38 6 chr3 155001295 155001453 -72523125 - L1ME3A LINE L1 -208 5962 5800 1958 132 0 13 chr3 155001492 155001795 -72522783 - AluSx SINE Alu -13 299 1 1837 149 10 0 chr3 155001875 155002163 -72522415 + AluSx SINE Alu 6 296 -16 293 262 10 19 chr3 155002164 155002267 -72522311 + MLT1B LTR MaLR 74 175 -215 2132 95 0 0 chr3 155002283 155002566 -72522012 + AluSc SINE Alu 12 294 -15 1826 142 13 10 chr3 155002576 155002878 -72521700 + AluSx SINE Alu 1 303 -9 826 199 12 6 chr3 155002878 155003044 -72521534 + AluJb SINE Alu 134 300 -12 373 228 101 6 chr3 155003147 155003305 -72521273 + AluJo SINE Alu 122 294 -8 781 127 17 0 chr3 155003508 155003626 -72520952 + FLAM_C SINE Alu 3 122 -21 198 0 0 0 chr3 155003626 155003648 -72520930 + (TAAAA)n Simple_repeat Simple_repeat 2 23 0 801 142 8 0 chr3 155003659 155003793 -72520785 + AluJb SINE Alu 177 311 -1 821 325 133 24 chr3 155003822 155004416 -72520162 - L2 LINE L2 -955 2359 1701 312 314 21 43 chr3 155004498 155004638 -72519940 + MIR3 SINE MIR 69 205 -3 235 314 100 0 chr3 155004697 155004767 -72519811 + L2 LINE L2 3191 3267 -5 296 332 42 47 chr3 155005105 155005319 -72519259 + L2 LINE L2 2261 2473 -841 357 265 87 60 chr3 155005411 155005437 -72519141 - L1ME4a LINE L1 -100 6021 5997 974 198 32 68 chr3 155005437 155005525 -72519053 - MER8 DNA MER2_type 0 239 149 2325 80 0 0 chr3 155005525 155005826 -72518752 + AluY SINE Alu 1 301 -10 974 198 32 68 chr3 155005826 155005985 -72518593 - MER8 DNA MER2_type -90 149 1 357 265 87 60 chr3 155005985 155006143 -72518435 - L1ME4a LINE L1 -124 5997 5832 249 196 93 21 chr3 155006163 155006260 -72518318 - LTR7 LTR ERV1 -11 439 336 1318 177 58 31 chr3 155006486 155006780 -72517798 + AluJb SINE Alu 1 302 -10 2049 112 0 14 chr3 155006808 155007104 -72517474 + AluSx SINE Alu 1 292 -20 319 232 258 14 chr3 155007210 155007356 -72517222 + MIR SINE MIR 38 216 -46 1324 139 0 0 chr3 155007392 155007586 -72516992 + AluSx SINE Alu 11 204 -108 979 148 7 7 chr3 155007586 155007735 -72516843 + AluSg/x SINE Alu 124 272 -40 34 0 0 0 chr3 155008009 155008043 -72516535 + AT_rich Low_complexity Low_complexity 1 34 0 21 0 0 0 chr3 155008338 155008359 -72516219 + AT_rich Low_complexity Low_complexity 1 21 0 919 127 22 0 chr3 155008359 155008493 -72516085 + AluSg1 SINE Alu 1 137 -172 1896 149 0 3 chr3 155008634 155008936 -72515642 - AluSx SINE Alu -11 301 1 555 251 89 116 chr3 155009192 155009744 -72514834 - L2 LINE L2 0 3313 2782 1995 136 0 0 chr3 155009744 155010038 -72514540 + AluSx SINE Alu 1 294 -18 555 251 89 116 chr3 155010038 155010083 -72514495 - L2 LINE L2 -531 2782 2737 908 182 0 0 chr3 155010100 155010259 -72514319 + AluJb SINE Alu 131 289 -23 363 197 27 158 chr3 155010395 155010526 -72514052 - L2 LINE L2 -1219 2095 1993 1752 154 3 43 chr3 155010526 155010851 -72513727 + AluJb SINE Alu 1 312 0 363 197 27 158 chr3 155010851 155010902 -72513676 - L2 LINE L2 -1321 1993 1937 1507 241 44 51 chr3 155011214 155011580 -72512998 + LTR16B LTR ERVL 1 365 -99 2258 88 0 7 chr3 155011580 155011887 -72512691 - AluSx SINE Alu -7 305 1 1507 241 44 51 chr3 155011887 155011948 -72512630 + LTR16B LTR ERVL 365 425 -39 1042 334 30 26 chr3 155011970 155012473 -72512105 + HERV16 LTR ERVL 3 507 -4489 1836 144 29 10 chr3 155012791 155012926 -72511652 + AluJb SINE Alu 1 132 -180 2161 113 3 6 chr3 155012926 155013237 -72511341 + AluSg SINE Alu 1 310 0 1836 144 29 10 chr3 155013237 155013407 -72511171 + AluJb SINE Alu 132 312 0 903 267 80 75 chr3 155013463 155013857 -72510721 + HERV16 LTR ERVL 4505 4903 -93 1321 132 123 134 chr3 155013857 155014327 -72510251 + MER4C LTR ERV1 1 465 0 903 267 80 75 chr3 155014327 155014422 -72510156 + HERV16 LTR ERVL 4903 4996 0 1082 258 68 63 chr3 155014422 155014449 -72510129 + LTR16B LTR ERVL 1 26 -438 2361 79 0 0 chr3 155014449 155014754 -72509824 + AluY SINE Alu 1 305 -6 1082 258 68 63 chr3 155014754 155015184 -72509394 + LTR16B LTR ERVL 26 460 -4 585 274 59 27 chr3 155015838 155016024 -72508554 + MLT1J2 LTR MaLR 259 450 0 2048 89 6 54 chr3 155016434 155016749 -72507829 - AluSx SINE Alu -12 300 1 380 318 100 29 chr3 155016758 155016928 -72507650 - MIR SINE MIR -13 249 68 240 253 58 11 chr3 155017273 155017360 -72507218 + LTR16B LTR ERVL 244 334 -130 1915 122 35 0 chr3 155017434 155017722 -72506856 - AluSx SINE Alu -14 298 1 275 148 19 0 chr3 155017723 155017777 -72506801 + Zaphod DNA AcHobo 3880 3934 -97 204 357 89 0 chr3 155018008 155018120 -72506458 - L2 LINE L2 -23 3290 3169 814 214 40 0 chr3 155018694 155018867 -72505711 - AluJo SINE Alu 0 312 133 1726 185 3 0 chr3 155018940 155019232 -72505346 + AluJb SINE Alu 1 293 -19 314 237 123 18 chr3 155019245 155019359 -72505219 - AluJo SINE Alu -172 130 5 1526 230 43 50 chr3 155020180 155020364 -72504214 + MLT1C LTR MaLR 6 190 -277 2361 107 0 0 chr3 155020364 155020673 -72503905 + AluSc SINE Alu 1 309 0 1526 230 43 50 chr3 155020673 155020949 -72503629 + MLT1C LTR MaLR 190 463 -4 1646 167 20 10 chr3 155021662 155021962 -72502616 - AluJo SINE Alu -9 303 1 * 2027 135 10 13 chr3 155021961 155022273 -72502305 - AluSx SINE Alu -1 311 1 2159 92 14 7 chr3 155022321 155022616 -72501962 - AluSp SINE Alu -16 297 1 980 161 0 0 chr3 155023536 155023685 -72500893 - AluSq/x SINE Alu -164 149 1 1763 204 52 25 chr3 155024545 155024986 -72499592 + MLT1D LTR MaLR 53 505 0 2215 104 14 0 chr3 155025099 155025396 -72499182 + AluSx SINE Alu 1 301 -11 320 338 132 28 chr3 155026000 155026213 -72498365 - HAL1 LINE L1 -1837 670 436 226 264 220 44 chr3 155026217 155026513 -72498065 - HAL1 LINE L1 -2111 396 49 2059 127 7 0 chr3 155026629 155026913 -72497665 + AluSx SINE Alu 1 286 -26 2096 118 3 0 chr3 155027207 155027494 -72497084 - AluSx SINE Alu -22 290 3 1724 165 0 14 chr3 155027502 155027822 -72496756 - AluJb SINE Alu 0 316 1 181 313 0 45 chr3 155028033 155028100 -72496478 - L2 LINE L2 -21 3251 3188 1623 206 127 2 chr3 155028116 155028534 -72496044 - Charlie4a DNA MER1_type -1 507 38 253 379 19 10 chr3 155028728 155028831 -72495747 + MIR SINE MIR 32 135 -73 380 206 191 15 chr3 155029879 155030015 -72494563 - HAL1b LINE L1 0 1348 1189 2386 84 0 0 chr3 155030399 155030697 -72493881 - AluSg SINE Alu -12 298 1 1672 170 13 31 chr3 155030699 155031016 -72493562 - AluJb SINE Alu -1 311 1 1095 198 12 87 chr3 155031145 155031176 -72493402 - L1MC4 LINE L1 0 8042 8010 2179 138 0 0 chr3 155031176 155031472 -72493106 + AluSx SINE Alu 3 298 -14 1095 198 12 87 chr3 155031472 155031784 -72492794 - L1MC4 LINE L1 -32 8010 7725 216 158 0 0 chr3 155031868 155031906 -72492672 + (TA)n Simple_repeat Simple_repeat 2 39 0 519 219 61 0 chr3 155031917 155032031 -72492547 - L1MC4 LINE L1 -370 7672 7552 2352 82 3 7 chr3 155032036 155032339 -72492239 + AluY SINE Alu 1 302 -9 2265 93 0 0 chr3 155032357 155032647 -72491931 + AluSg1 SINE Alu 1 290 -19 520 252 64 13 chr3 155032648 155032864 -72491714 - L1MB7 LINE L1 -8 6171 5939 * 1646 224 37 19 chr3 155032856 155033266 -72491312 - L1ME1 LINE L1 -272 6130 5714 2502 66 0 10 chr3 155033266 155033571 -72491007 - AluY SINE Alu -9 302 1 2167 125 0 0 chr3 155033575 155033872 -72490706 - AluSx SINE Alu -15 297 1 1042 158 0 0 chr3 155033876 155034028 -72490550 - AluJb SINE Alu -23 289 138 1469 134 103 52 chr3 155034033 155034317 -72490261 - L1ME1 LINE L1 -696 5718 5450 2040 142 6 6 chr3 155034317 155034628 -72489950 - AluSx SINE Alu -1 311 1 1621 158 37 30 chr3 155034630 155034928 -72489650 - AluJo SINE Alu -12 300 1 1544 192 10 14 chr3 155034937 155035229 -72489349 - AluJb SINE Alu -21 291 1 1469 134 103 52 chr3 155035229 155035374 -72489204 - L1ME1 LINE L1 -971 5443 5259 1811 97 89 4 chr3 155035490 155035747 -72488831 + AluSx SINE Alu 18 296 -16 3000 205 27 52 chr3 155035747 155036078 -72488500 - L1ME1 LINE L1 -1734 4648 4310 2513 59 3 3 chr3 155036078 155036381 -72488197 + AluY SINE Alu 1 303 -8 3000 205 27 52 chr3 155036381 155036870 -72487708 - L1ME1 LINE L1 -2072 4310 3849 494 158 85 0 chr3 155036870 155036952 -72487626 - MER70A LTR ERVL 0 472 384 11859 184 72 26 chr3 155036954 155036969 -72487609 - L1P5 LINE L1 -647 6220 6207 2027 126 0 32 chr3 155036969 155037279 -72487299 - AluSx SINE Alu -12 300 1 11859 184 72 26 chr3 155037279 155040139 -72484439 - L1P5 LINE L1 -660 6207 3479 2269 69 0 0 chr3 155040139 155040413 -72484165 + AluY SINE Alu 36 309 -2 11859 184 72 26 chr3 155040413 155041288 -72483290 - L1P5 LINE L1 -3388 3479 2645 1550 182 57 7 chr3 155041288 155041585 -72482993 - AluJo SINE Alu 0 312 1 11859 184 72 26 chr3 155041585 155042232 -72482346 - L1P5 LINE L1 -4222 2645 2029 225 0 0 0 chr3 155042232 155042257 -72482321 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2238 99 0 0 chr3 155042260 155042544 -72482034 - AluSx SINE Alu -28 284 1 11859 184 72 26 chr3 155042544 155044958 -72479620 - L1P5 LINE L1 -4839 2028 3 5479 238 92 44 chr3 155044982 155046126 -72478452 - L1ME1 LINE L1 -3211 3171 2084 2477 45 3 0 chr3 155046126 155046439 -72478139 - AluY SINE Alu 0 311 1 5479 238 92 44 chr3 155046439 155046822 -72477756 - L1ME1 LINE L1 -4298 2084 1721 1726 195 3 0 chr3 155046822 155047119 -72477459 - AluJb SINE Alu -14 298 1 5479 238 92 44 chr3 155047119 155047130 -72477448 - L1ME1 LINE L1 -4661 1721 1712 1334 212 50 27 chr3 155047130 155047427 -72477151 - AluJb SINE Alu -8 304 1 5479 238 92 44 chr3 155047427 155049092 -72475486 - L1ME1 LINE L1 -4670 1712 33 230 273 0 83 chr3 155049138 155049259 -72475319 - L1MEc LINE L1 -4554 2584 2474 526 267 112 10 chr3 155049275 155049481 -72475097 - L1MEc LINE L1 -6612 247 21 25 0 0 0 chr3 155050910 155050935 -72473643 + AT_rich Low_complexity Low_complexity 1 25 0 257 264 18 45 chr3 155051103 155051213 -72473365 + L1ME LINE L1 5535 5641 -480 2006 139 3 7 chr3 155051279 155051582 -72472996 + AluJb SINE Alu 1 302 -10 290 310 41 78 chr3 155051647 155051966 -72472612 + L2 LINE L2 1450 1756 -1558 210 327 40 33 chr3 155052070 155052220 -72472358 + L2 LINE L2 1975 2125 -1189 1242 233 106 64 chr3 155052746 155053227 -72471351 + L2 LINE L2 2147 2647 -667 2082 112 0 0 chr3 155053254 155053530 -72471048 + AluSx SINE Alu 33 308 -4 1023 254 57 104 chr3 155053709 155053906 -72470672 - L1ME3A LINE L1 -208 6242 6037 1787 159 3 17 chr3 155053906 155054207 -72470371 - AluSx SINE Alu -13 299 3 1023 254 57 104 chr3 155054207 155054624 -72469954 - L1ME3A LINE L1 -413 6037 5657 458 255 111 0 chr3 155054613 155054766 -72469812 - L1ME3A LINE L1 -3364 3062 2893 * 1649 176 20 13 chr3 155054811 155055117 -72469461 - AluJo SINE Alu -4 308 1 872 168 95 0 chr3 155055127 155055264 -72469314 - AluJo SINE Alu -16 286 137 1430 144 5 0 chr3 155055267 155055489 -72469089 - AluJb SINE Alu -3 309 87 647 218 8 23 chr3 155055497 155055630 -72468948 - AluJo SINE Alu -170 132 2 9985 181 86 66 chr3 155055634 155056443 -72468135 - L1MCa LINE L1 -3523 2903 2112 284 108 0 0 chr3 155056443 155056480 -72468098 - U2 snRNA snRNA -151 37 1 9985 181 86 66 chr3 155056480 155056999 -72467579 - L1MCa LINE L1 -4314 2112 1605 735 196 8 8 chr3 155056999 155057132 -72467446 - FLAM_A SINE Alu 0 133 1 9985 181 86 66 chr3 155057132 155057614 -72466964 - L1MCa LINE L1 -4821 1605 1134 757 221 0 0 chr3 155057614 155057745 -72466833 - FLAM_A SINE Alu -2 131 1 9985 181 86 66 chr3 155057745 155058721 -72465857 - L1MCa LINE L1 -5292 1134 4 227 264 0 0 chr3 155058720 155058773 -72465805 - L1MC/D LINE L1 -2314 5728 5676 * 257 226 123 0 chr3 155058958 155059039 -72465539 + L1MC/D LINE L1 5694 5783 -542 1547 156 64 28 chr3 155059485 155059767 -72464811 - AluJo SINE Alu -11 301 10 340 248 179 0 chr3 155059828 155059945 -72464633 + MIR SINE MIR 110 247 -15 21 0 0 0 chr3 155060525 155060546 -72464032 + AT_rich Low_complexity Low_complexity 1 21 0 896 236 281 32 chr3 155060658 155060791 -72463787 + HsTC2 DNA Tc2 28 127 -1771 1775 178 7 0 chr3 155060791 155061083 -72463495 - AluJb SINE Alu -18 294 1 1753 175 3 26 chr3 155061083 155061391 -72463187 - AluJo SINE Alu -10 302 1 896 236 281 32 chr3 155061391 155061812 -72462766 + HsTC2 DNA Tc2 126 1894 -4 277 238 164 25 chr3 155061877 155061999 -72462579 + L2 LINE L2 2452 2590 -724 363 232 63 0 chr3 155062000 155062095 -72462483 + HsTC2 DNA Tc2 1794 1894 -4 351 249 121 59 chr3 155062102 155062375 -72462203 - L1ME4a LINE L1 -2 6119 5830 3240 165 41 20 chr3 155062558 155063169 -72461409 - L1MB7 LINE L1 -9 6175 5552 26 50 0 0 chr3 155063268 155063308 -72461270 + AT_rich Low_complexity Low_complexity 1 40 0 1173 243 109 32 chr3 155063320 155063724 -72460854 - L2 LINE L2 -12 3301 2867 331 241 83 19 chr3 155063704 155063812 -72460766 - L2 LINE L2 -569 2745 2631 * 206 253 139 13 chr3 155064150 155064229 -72460349 - L2 LINE L2 -278 3035 2947 242 284 45 0 chr3 155065657 155065745 -72458833 - L1MC4 LINE L1 -1335 6707 6616 242 200 0 71 chr3 155065744 155065814 -72458764 - L1MCa LINE L1 -4356 2070 2006 * 246 229 0 62 chr3 155065797 155065893 -72458685 - L1MC4 LINE L1 -1339 6703 6614 * 280 69 42 83 chr3 155065855 155065927 -72458651 + L1MCa LINE L1 1995 2063 -4363 543 151 0 78 chr3 155065958 155066344 -72458234 + (TATATG)n Simple_repeat Simple_repeat 1 356 0 231 275 100 0 chr3 155066352 155066432 -72458146 - L1MC4 LINE L1 -1340 6702 6615 230 299 0 0 chr3 155066403 155066470 -72458108 - L1MC4 LINE L1 -1339 6703 6637 * 209 364 0 0 chr3 155066470 155066536 -72458042 + (CA)n Simple_repeat Simple_repeat 1 66 0 339 275 0 0 chr3 155066543 155066663 -72457915 + (TA)n Simple_repeat Simple_repeat 2 121 0 277 274 160 9 chr3 155067142 155067248 -72457330 + L2 LINE L2 3151 3272 0 4371 135 45 13 chr3 155068186 155068899 -72455679 - L1M4c LINE L1 -5618 766 31 1429 69 11 21 chr3 155068987 155069225 -72455353 - L1PA2 LINE L1 0 6155 5968 1535 219 18 3 chr3 155069276 155069559 -72455019 + AluJo SINE Alu 2 288 -14 328 294 99 49 chr3 155069562 155069947 -72454631 - L1M4 LINE L1 -1935 4211 3808 22 0 0 0 chr3 155070063 155070085 -72454493 + AT_rich Low_complexity Low_complexity 1 22 0 2086 134 0 0 chr3 155070085 155070377 -72454201 - AluSq SINE Alu -21 292 1 1057 174 15 15 chr3 155070390 155070586 -72453992 - MLT1B LTR MaLR 0 390 195 1285 191 0 0 chr3 155070624 155070844 -72453734 - AluJo SINE Alu -8 304 85 2313 83 0 13 chr3 155070856 155071158 -72453420 - AluY SINE Alu -13 298 1 2237 96 0 3 chr3 155071168 155071459 -72453119 - AluSc SINE Alu -14 295 6 305 272 0 10 chr3 155071468 155071571 -72453007 - MLT1B LTR MaLR -215 175 74 1938 149 10 0 chr3 155071572 155071860 -72452718 - AluSx SINE Alu -16 296 6 2175 130 10 0 chr3 155071940 155072247 -72452331 + AluSx SINE Alu 1 310 -2 673 117 160 10 chr3 155072971 155073110 -72451468 + L1MA7 LINE L1 6120 6269 -22 829 313 96 21 chr3 155073201 155073901 -72450677 + HAL1b LINE L1 95 846 -502 2265 99 3 0 chr3 155074167 155074476 -72450102 + AluSp SINE Alu 1 310 0 873 129 0 0 chr3 155074708 155074832 -72449746 - AluSg/x SINE Alu -13 299 176 538 328 104 43 chr3 155075012 155075454 -72449124 + L1MC4a LINE L1 2576 3060 -3086 2324 103 3 3 chr3 155075454 155075765 -72448813 + AluSx SINE Alu 1 311 -1 538 328 104 43 chr3 155075765 155075877 -72448701 + L1MC4a LINE L1 3060 3164 -2982 1921 161 0 7 chr3 155075991 155076289 -72448289 + AluJo SINE Alu 1 296 -16 1648 190 17 7 chr3 155076423 155076556 -72448022 + AluJb SINE Alu 1 131 -181 2374 78 7 0 chr3 155076556 155076850 -72447728 + AluSp SINE Alu 1 296 -17 1648 190 17 7 chr3 155076850 155077006 -72447572 + AluJb SINE Alu 131 293 -19 2268 251 127 86 chr3 155077231 155077833 -72446745 + L1MC4a LINE L1 3800 4376 -1770 1426 186 57 14 chr3 155077833 155078113 -72446465 - AluJo SINE Alu -20 292 1 2268 251 127 86 chr3 155078113 155078151 -72446427 + L1MC4a LINE L1 4376 4411 -1735 888 138 0 0 chr3 155078151 155078274 -72446304 + FLAM_C SINE Alu 1 123 -20 2268 251 127 86 chr3 155078274 155078620 -72445958 + L1MC4a LINE L1 4411 4741 -1405 2017 163 68 0 chr3 155078620 155078946 -72445632 - MER7A DNA MER2_type 0 346 1 2268 251 127 86 chr3 155078946 155080171 -72444407 + L1MC4a LINE L1 4741 5403 -743 3361 194 205 71 chr3 155080223 155080868 -72443710 + L1MC4 LINE L1 6345 6902 -1140 1503 205 76 0 chr3 155080868 155081156 -72443422 + AluSx SINE Alu 1 310 -2 3361 194 205 71 chr3 155081156 155081729 -72442849 + L1MC4 LINE L1 6902 7397 -645 2079 80 38 10 chr3 155081729 155082017 -72442561 + AluSc SINE Alu 1 296 -13 1746 173 14 0 chr3 155082026 155082310 -72442268 + AluJo SINE Alu 5 292 -20 3361 194 205 71 chr3 155082310 155082380 -72442198 + L1MC4 LINE L1 7403 7819 -223 1916 158 3 3 chr3 155082411 155082714 -72441864 + AluJo SINE Alu 1 303 -9 1959 141 3 13 chr3 155082780 155083092 -72441486 - AluSx SINE Alu -3 309 1 645 226 39 19 chr3 155083092 155083247 -72441331 - L1M4b LINE L1 -6691 168 11 1519 216 32 5 chr3 155084286 155084656 -72439922 - L1M4 LINE L1 -2154 4803 4424 494 158 85 0 chr3 155084656 155084738 -72439840 - MER70A LTR ERVL 0 472 384 11859 184 72 27 chr3 155084740 155084755 -72439823 - L1P5 LINE L1 -647 6220 6207 2027 126 0 32 chr3 155084755 155085065 -72439513 - AluSx SINE Alu -12 300 1 11859 184 72 27 chr3 155085065 155087925 -72436653 - L1P5 LINE L1 -660 6207 3479 2180 80 0 0 chr3 155087925 155088199 -72436379 + AluY SINE Alu 36 309 -2 11859 184 72 27 chr3 155088199 155089077 -72435501 - L1P5 LINE L1 -3388 3479 2642 1527 184 58 7 chr3 155089077 155089371 -72435207 - AluJo SINE Alu -3 309 1 11859 184 72 27 chr3 155089371 155090018 -72434560 - L1P5 LINE L1 -4225 2642 2026 225 0 0 0 chr3 155090018 155090043 -72434535 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 2238 99 0 0 chr3 155090046 155090330 -72434248 - AluSx SINE Alu -28 284 1 11859 184 72 27 chr3 155090330 155092740 -72431838 - L1P5 LINE L1 -4842 2025 3 5479 237 93 44 chr3 155092764 155093908 -72430670 - L1MEc LINE L1 -3211 3746 2659 2477 45 3 0 chr3 155093908 155094221 -72430357 - AluY SINE Alu 0 311 1 5479 237 93 44 chr3 155094221 155094604 -72429974 - L1MEc LINE L1 -4298 2659 2296 1726 195 3 0 chr3 155094604 155094901 -72429677 - AluJb SINE Alu -14 298 1 5479 237 93 44 chr3 155094901 155094912 -72429666 - L1MEc LINE L1 -4661 2296 2287 1334 212 50 27 chr3 155094912 155095209 -72429369 - AluJb SINE Alu -8 304 1 5479 237 93 44 chr3 155095209 155096874 -72427704 - L1MEc LINE L1 -4670 2287 608 526 267 112 10 chr3 155097057 155097263 -72427315 - L1MEc LINE L1 -6612 247 21 25 0 0 0 chr3 155098690 155098715 -72425863 + AT_rich Low_complexity Low_complexity 1 25 0 257 264 18 45 chr3 155098883 155098993 -72425585 + L1ME LINE L1 5535 5641 -480 2006 139 3 7 chr3 155099059 155099362 -72425216 + AluJb SINE Alu 1 302 -10 303 298 47 85 chr3 155099427 155099746 -72424832 + L2 LINE L2 1450 1756 -1558 210 327 40 33 chr3 155099850 155100000 -72424578 + L2 LINE L2 1975 2125 -1189 1242 233 106 64 chr3 155100526 155101007 -72423571 + L2 LINE L2 2147 2647 -667 1788 148 0 4 chr3 155101034 155101297 -72423281 + AluSx SINE Alu 33 294 -18 2369 95 0 0 chr3 155101299 155101605 -72422973 + AluY SINE Alu 1 306 -5 437 227 61 80 chr3 155101786 155101885 -72422693 + L1ME LINE L1 5511 5610 -511 1520 130 120 29 chr3 155101885 155102161 -72422417 + AluJo SINE Alu 1 301 -11 1859 117 45 0 chr3 155102163 155102427 -72422151 + AluSx SINE Alu 23 298 -14 437 227 61 80 chr3 155102427 155102487 -72422091 + L1ME LINE L1 5611 5670 -451 2077 121 3 16 chr3 155102506 155102811 -72421767 + AluSq SINE Alu 1 301 -12 326 249 272 58 chr3 155104610 155104742 -72419836 - MIR SINE MIR -5 257 155 1470 145 74 0 chr3 155104742 155104984 -72419594 + AluJb SINE Alu 43 302 -10 326 249 272 58 chr3 155104984 155105024 -72419554 - MIR SINE MIR -107 155 48 906 179 20 56 chr3 155105078 155105104 -72419474 + MER5A DNA MER1_type 1 26 -163 2031 166 69 64 chr3 155105104 155105585 -72418993 - MER31A LTR ERV1 -2 483 1 906 179 20 56 chr3 155105585 155105754 -72418824 + MER5A DNA MER1_type 26 189 0 214 170 21 21 chr3 155105964 155106011 -72418567 - L2 LINE L2 -4 3309 3263 394 288 85 26 chr3 155106541 155106694 -72417884 + L2 LINE L2 3107 3268 -4 297 257 160 14 chr3 155107219 155107363 -72417215 + MIR SINE MIR 21 187 -21 561 190 158 13 chr3 155107374 155107532 -72417046 + MIR SINE MIR 6 186 -76 995 168 6 6 chr3 155107534 155107724 -72416854 - AluJo SINE Alu 0 307 118 200 35 35 0 chr3 155107752 155107781 -72416797 + (TG)n Simple_repeat Simple_repeat 2 31 0 1087 196 5 27 chr3 155107824 155107990 -72416588 - AluJb SINE Alu -12 300 139 1925 146 13 10 chr3 155107990 155108292 -72416286 - AluSx SINE Alu -9 303 1 1087 196 5 27 chr3 155108292 155108345 -72416233 - AluJb SINE Alu -173 139 86 1418 179 0 4 chr3 155108454 155108688 -72415890 + AluJo SINE Alu 1 233 -79 1974 148 0 19 chr3 155109095 155109413 -72415165 - AluSx SINE Alu 0 312 1 2220 116 0 7 chr3 155110337 155110640 -72413938 + AluSx SINE Alu 1 301 -11 2231 103 3 0 chr3 155111179 155111471 -72413107 + AluSg SINE Alu 1 293 -17 1779 136 56 0 chr3 155111642 155111929 -72412649 - AluSx SINE Alu -9 303 1 2761 142 51 0 chr3 155112227 155112678 -72411900 + Tigger1 DNA MER2_type 1 474 -1944 * 5535 128 89 12 chr3 155112675 155113634 -72410944 + Tigger1 DNA MER2_type 1386 2417 -1 2006 148 3 0 chr3 155113727 155114018 -72410560 + AluSp SINE Alu 1 292 -21 29 0 0 0 chr3 155114062 155114091 -72410487 + AT_rich Low_complexity Low_complexity 1 29 0 237 85 75 38 chr3 155114169 155114275 -72410303 + (TA)n Simple_repeat Simple_repeat 1 110 0 2009 144 0 7 chr3 155114321 155114626 -72409952 + AluSx SINE Alu 1 303 -9 2431 203 39 80 chr3 155114666 155115429 -72409149 - L1MC4 LINE L1 -370 7672 6941 207 0 0 0 chr3 155115438 155115461 -72409117 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 614 165 10 0 chr3 155115483 155115580 -72408998 + AluSg/x SINE Alu 86 183 -129 708 60 0 0 chr3 155115583 155115666 -72408912 - AluSg/x SINE Alu -73 236 154 899 147 0 0 chr3 155115780 155115909 -72408669 - FLAM_C SINE Alu -2 131 3 5677 155 42 9 chr3 155116688 155117899 -72406679 - L1MA4 LINE L1 -5 7714 6459 8641 193 39 52 chr3 155117926 155118893 -72405685 - L1MA4 LINE L1 -1744 5821 4843 2231 109 0 0 chr3 155118893 155119186 -72405392 - AluSq SINE Alu -19 294 2 8641 193 39 52 chr3 155119186 155119518 -72405060 - L1MA4 LINE L1 -2722 4843 4508 186 71 0 0 chr3 155119518 155119546 -72405032 + (TTG)n Simple_repeat Simple_repeat 3 30 0 8641 193 39 52 chr3 155119546 155120283 -72404295 - L1MA4 LINE L1 -3057 4508 3811 2157 105 0 0 chr3 155120283 155120568 -72404010 - AluSc SINE Alu -24 285 1 8641 193 39 52 chr3 155120568 155121030 -72403548 - L1MA4 LINE L1 -3754 3811 3344 2099 145 0 0 chr3 155121053 155121357 -72403221 + AluSx SINE Alu 5 308 -4 206 32 32 0 chr3 155121539 155121570 -72403008 + (TTTG)n Simple_repeat Simple_repeat 2 33 0 801 164 0 8 chr3 155121570 155121692 -72402886 - FLAM_C SINE Alu -22 121 1 424 227 60 13 chr3 155121694 155121844 -72402734 - L1MA4 LINE L1 -4388 3177 3021 3049 100 62 105 chr3 155121845 155122473 -72402105 - LTR14B LTR ERVK 0 608 8 2483 258 65 21 chr3 155122475 155123474 -72401104 - L1M2 LINE L1 -4225 2624 1582 549 299 68 80 chr3 155123845 155124333 -72400245 - L1M2 LINE L1 -5797 982 501 1968 145 0 3 chr3 155124828 155125124 -72399454 + AluSx SINE Alu 3 297 -15 1977 103 57 7 chr3 155125126 155125408 -72399170 + AluSx SINE Alu 1 296 -16 374 274 204 10 chr3 155125677 155125878 -72398700 + L2 LINE L2 3032 3271 -42 2447 80 0 0 chr3 155125898 155126197 -72398381 - AluY SINE Alu -12 299 1 1997 126 77 28 chr3 155126737 155127051 -72397527 + MLT1B LTR MaLR 1 337 -53 2006 114 61 0 chr3 155127051 155127331 -72397247 + AluSc SINE Alu 1 297 -12 1997 126 77 28 chr3 155127331 155127380 -72397198 + MLT1B LTR MaLR 337 382 -8 348 213 25 38 chr3 155127385 155127465 -72397113 - L1MC5 LINE L1 -72 7889 7811 1973 86 124 0 chr3 155127946 155128213 -72396365 - AluSp SINE Alu -13 300 1 489 233 25 83 chr3 155128649 155128711 -72395867 - MIR SINE MIR -36 172 108 2325 73 3 3 chr3 155128711 155129000 -72395578 - AluSx SINE Alu -23 289 1 489 233 25 83 chr3 155129000 155129106 -72395472 - MIR SINE MIR -100 108 8 2328 88 0 7 chr3 155129814 155130110 -72394468 - AluSc SINE Alu -15 294 1 1278 191 16 107 chr3 155130115 155130434 -72394144 - AluJb SINE Alu -8 294 5 622 253 72 21 chr3 155131853 155132047 -72392531 + MIR SINE MIR 2 205 -57 2277 93 0 0 chr3 155132414 155132703 -72391875 - AluSx SINE Alu -21 291 3 1950 127 11 0 chr3 155132895 155133170 -72391408 - AluSx SINE Alu -24 288 11 817 173 47 0 chr3 155133252 155133379 -72391199 - FLAM_C SINE Alu 0 133 1 187 280 20 0 chr3 155133839 155133889 -72390689 + L2 LINE L2 2999 3049 -223 215 318 95 0 chr3 155134025 155134088 -72390490 + L2 LINE L2 3204 3272 0 199 321 0 0 chr3 155134448 155134504 -72390074 - MIR SINE MIR -11 251 196 1862 127 69 7 chr3 155134607 155134898 -72389680 + AluJb SINE Alu 1 309 -3 1921 161 0 7 chr3 155134903 155135201 -72389377 + AluJo SINE Alu 1 296 -16 1648 190 17 7 chr3 155135335 155135468 -72389110 + AluJb SINE Alu 1 131 -181 2361 82 7 0 chr3 155135468 155135762 -72388816 + AluSp SINE Alu 1 296 -17 1648 190 17 7 chr3 155135762 155135918 -72388660 + AluJb SINE Alu 131 293 -19 2268 251 128 85 chr3 155136143 155136745 -72387833 + L1MC4a LINE L1 3800 4375 -1771 1333 196 57 18 chr3 155136745 155137026 -72387552 - AluJo SINE Alu -20 292 1 2268 251 128 85 chr3 155137026 155137065 -72387513 + L1MC4a LINE L1 4375 4411 -1735 793 117 62 8 chr3 155137065 155137193 -72387385 + AluJo SINE Alu 2 136 -176 2268 251 128 85 chr3 155137193 155137530 -72387048 + L1MC4a LINE L1 4411 4732 -1414 2017 163 68 0 chr3 155137530 155137856 -72386722 - MER7A DNA MER2_type 0 346 1 2268 251 128 85 chr3 155137856 155139081 -72385497 + L1MC4a LINE L1 4732 5403 -743 3361 194 205 71 chr3 155139133 155139778 -72384800 + L1MC4 LINE L1 6345 6902 -1140 1503 205 76 0 chr3 155139778 155140066 -72384512 + AluSx SINE Alu 1 310 -2 3361 194 205 71 chr3 155140066 155140639 -72383939 + L1MC4 LINE L1 6902 7397 -645 2079 80 38 10 chr3 155140639 155140927 -72383651 + AluSc SINE Alu 1 296 -13 1731 175 11 0 chr3 155140936 155141221 -72383357 + AluJo SINE Alu 5 292 -20 3361 194 205 71 chr3 155141221 155141291 -72383287 + L1MC4 LINE L1 7403 7819 -223 231 209 119 67 chr3 155141297 155141322 -72383256 + L1MC4 LINE L1 7902 7924 -118 1916 158 3 3 chr3 155141322 155141625 -72382953 + AluJo SINE Alu 1 303 -9 231 209 119 67 chr3 155141625 155141691 -72382887 + L1MC4 LINE L1 7924 8005 -37 1926 162 3 3 chr3 155141691 155142000 -72382578 - AluSx SINE Alu -3 309 1 231 209 119 67 chr3 155142000 155142041 -72382537 + L1MC4 LINE L1 8005 8042 0 1819 171 6 22 chr3 155142597 155142913 -72381665 - AluJb SINE Alu -1 311 1 412 247 21 0 chr3 155143056 155143153 -72381425 + L2 LINE L2 3139 3237 -35 1616 106 4 47 chr3 155143441 155143697 -72380881 + AluSg SINE Alu 1 245 -65 356 110 134 85 chr3 155143697 155143779 -72380799 + AluSc SINE Alu 204 289 -10 4314 233 39 66 chr3 155143779 155144771 -72379807 - L1MB4 LINE L1 -2 6178 5160 2003 129 0 42 chr3 155144771 155145082 -72379496 - AluSx SINE Alu -14 298 1 4314 233 39 66 chr3 155145082 155146578 -72378000 - L1MB4 LINE L1 -1020 5160 3773 537 186 71 64 chr3 155146580 155146720 -72377858 - L1MC1 LINE L1 -5 6328 6188 * 3677 213 45 7 chr3 155146712 155146731 -72377847 - L1M4 LINE L1 -1742 4902 4885 2054 120 25 103 chr3 155146731 155147138 -72377440 - THE1C LTR MaLR 0 375 1 3677 213 45 7 chr3 155147138 155147969 -72376609 - L1M4 LINE L1 -1759 4885 4020 3928 219 113 40 chr3 155147969 155148886 -72375692 - L1M4 LINE L1 -4483 2163 1315 2030 134 0 25 chr3 155148886 155149207 -72375371 + AluSq SINE Alu 1 313 0 3928 219 113 40 chr3 155149207 155149498 -72375080 - L1M4 LINE L1 -5331 1315 1047 754 212 0 0 chr3 155149498 155149630 -72374948 - FLAM_C SINE Alu -1 132 1 3928 219 113 40 chr3 155149630 155150174 -72374404 - L1M4 LINE L1 -5599 1047 350 2167 122 10 0 chr3 155150278 155150574 -72374004 - AluSx SINE Alu -13 299 1 758 146 9 0 chr3 155150575 155150685 -72373893 - FLAM_A SINE Alu -9 133 23 1994 125 26 7 chr3 155150736 155151041 -72373537 - AluSx SINE Alu -1 311 1 953 198 90 56 chr3 155151043 155151209 -72373369 - L1M4 LINE L1 -2190 3956 3797 2311 80 3 0 chr3 155151209 155151496 -72373082 - AluY SINE Alu -23 288 1 953 198 90 56 chr3 155151496 155151652 -72372926 - L1M4 LINE L1 -2349 3797 3623 354 291 176 12 chr3 155151680 155151845 -72372733 - MIR SINE MIR -17 245 54 1261 254 116 46 chr3 155154475 155154976 -72369602 - MLT1H LTR MaLR 0 549 14 1253 234 161 66 chr3 155156001 155156689 -72367889 - L1MC4 LINE L1 0 8042 7421 2134 104 29 0 chr3 155156689 155156969 -72367609 + AluSx SINE Alu 1 288 -24 1253 234 161 66 chr3 155156969 155157157 -72367421 - L1MC4 LINE L1 -621 7421 7252 2229 80 0 0 chr3 155157157 155157432 -72367146 - AluSc SINE Alu -2 307 33 1253 234 161 66 chr3 155157432 155158029 -72366549 - L1MC4 LINE L1 -790 7252 6311 237 65 0 0 chr3 155158416 155158447 -72366131 + (T)n Simple_repeat Simple_repeat 1 31 0 300 274 0 55 chr3 155159269 155159342 -72365236 - MIR SINE MIR -173 89 21 228 327 70 32 chr3 155159473 155159629 -72364949 - L3 LINE CR1 -43 1534 1373 1829 143 11 4 chr3 155160208 155160487 -72364091 + AluSx SINE Alu 1 281 -31 1648 147 50 21 chr3 155160910 155161189 -72363389 - AluJb SINE Alu -25 287 1 1997 126 77 28 chr3 155164329 155164643 -72359935 + MLT1B LTR MaLR 1 337 -53 2006 114 61 0 chr3 155164643 155164923 -72359655 + AluSc SINE Alu 1 297 -12 1997 126 77 28 chr3 155164923 155164972 -72359606 + MLT1B LTR MaLR 337 382 -8 348 213 25 38 chr3 155164977 155165057 -72359521 - L1MC5 LINE L1 -72 7889 7811 1973 86 124 0 chr3 155165538 155165805 -72358773 - AluSp SINE Alu -13 300 1 483 219 22 93 chr3 155166241 155166303 -72358275 - MIR SINE MIR -36 172 122 2325 73 3 3 chr3 155166303 155166592 -72357986 - AluSx SINE Alu -23 289 1 483 219 22 93 chr3 155166592 155166667 -72357911 - MIR SINE MIR -86 122 43 2274 95 0 7 chr3 155167406 155167702 -72356876 - AluSc SINE Alu -15 294 1 1278 191 16 107 chr3 155167707 155168026 -72356552 - AluJb SINE Alu -8 294 5 622 253 72 21 chr3 155169445 155169639 -72354939 + MIR SINE MIR 2 205 -57 2277 93 0 0 chr3 155170006 155170295 -72354283 - AluSx SINE Alu -21 291 3 1818 134 11 7 chr3 155170487 155170764 -72353814 - AluSx SINE Alu -24 288 11 812 182 8 0 chr3 155170847 155170979 -72353599 - FLAM_C SINE Alu 0 133 1 257 264 18 45 chr3 155171045 155171155 -72353423 - L1ME LINE L1 -480 5641 5535 25 0 0 0 chr3 155171323 155171348 -72353230 + AT_rich Low_complexity Low_complexity 1 25 0 518 272 112 10 chr3 155172779 155172985 -72351593 + L1M4b LINE L1 -554 4294966968 -6612 5479 238 97 43 chr3 155173168 155174833 -72349745 + L1M4b LINE L1 33 1607 -4775 1334 212 50 27 chr3 155174833 155175130 -72349448 + AluJb SINE Alu 1 304 -8 5479 238 97 43 chr3 155175130 155175141 -72349437 + L1M4b LINE L1 1607 1616 -4766 1726 195 3 0 chr3 155175141 155175438 -72349140 + AluJb SINE Alu 1 298 -14 5479 238 97 43 chr3 155175438 155175821 -72348757 + L1M4b LINE L1 1616 1977 -4405 2477 45 3 0 chr3 155175821 155176134 -72348444 + AluY SINE Alu 1 311 0 5479 238 97 43 chr3 155176134 155177278 -72347300 + L1M4b LINE L1 1977 3171 -3211 11747 194 71 28 chr3 155177302 155179716 -72344862 + L1P5 LINE L1 3 2311 -4556 2238 99 0 0 chr3 155179716 155180000 -72344578 + AluSx SINE Alu 1 284 -28 225 0 0 0 chr3 155180003 155180028 -72344550 + (TAAA)n Simple_repeat Simple_repeat 2 26 0 11747 194 71 28 chr3 155180028 155180675 -72343903 + L1P5 LINE L1 2312 2930 -3937 1550 182 57 7 chr3 155180675 155180972 -72343606 + AluJo SINE Alu 1 312 0 11747 194 71 28 chr3 155180972 155181847 -72342731 + L1P5 LINE L1 2930 3766 -3101 2269 69 0 0 chr3 155181847 155182121 -72342457 - AluY SINE Alu -2 309 36 11747 194 71 28 chr3 155182121 155184978 -72339600 + L1P5 LINE L1 3766 6207 -660 1944 136 0 32 chr3 155184978 155185288 -72339290 + AluSx SINE Alu 1 300 -12 11747 194 71 28 chr3 155185288 155185303 -72339275 + L1P5 LINE L1 6207 6220 -647 479 171 85 0 chr3 155185305 155185387 -72339191 + MER70A LTR ERVL 384 472 0 813 273 41 4 chr3 155185387 155185629 -72338949 + L1M4b LINE L1 3849 4099 -2283 1997 126 77 28 chr3 155186005 155186319 -72338259 + MLT1B LTR MaLR 1 337 -53 1962 115 65 0 chr3 155186319 155186598 -72337980 + AluSc SINE Alu 1 297 -12 1997 126 77 28 chr3 155186598 155186647 -72337931 + MLT1B LTR MaLR 337 382 -8 348 213 25 38 chr3 155186652 155186732 -72337846 - L1MC5 LINE L1 -72 7889 7811 1973 86 124 0 chr3 155187213 155187480 -72337098 - AluSp SINE Alu -13 300 1 483 219 22 93 chr3 155187916 155187978 -72336600 - MIR SINE MIR -36 172 122 2325 73 3 3 chr3 155187978 155188267 -72336311 - AluSx SINE Alu -23 289 1 483 219 22 93 chr3 155188267 155188342 -72336236 - MIR SINE MIR -86 122 43 2328 88 0 7 chr3 155189081 155189377 -72335201 - AluSc SINE Alu -15 294 1 1278 191 16 107 chr3 155189382 155189701 -72334877 - AluJb SINE Alu -8 294 5 622 253 72 21 chr3 155191120 155191314 -72333264 + MIR SINE MIR 2 205 -57 2277 93 0 0 chr3 155191681 155191970 -72332608 - AluSx SINE Alu -21 291 3 1950 127 11 0 chr3 155192162 155192437 -72332141 - AluSx SINE Alu -24 288 11 841 165 47 0 chr3 155192520 155192647 -72331931 - FLAM_C SINE Alu 0 133 1 187 280 20 0 chr3 155193107 155193157 -72331421 + L2 LINE L2 2999 3049 -223 215 318 95 0 chr3 155193293 155193356 -72331222 + L2 LINE L2 3204 3272 0 199 321 0 0 chr3 155193716 155193772 -72330806 - MIR SINE MIR -11 251 196 1862 127 69 7 chr3 155193875 155194166 -72330412 + AluJb SINE Alu 1 309 -3 2189 119 0 3 chr3 155194171 155194464 -72330114 + AluSx SINE Alu 1 292 -20 346 186 0 0 chr3 155194464 155194534 -72330044 + L1MC4 LINE L1 7750 7819 -223 231 209 119 67 chr3 155194540 155194565 -72330013 + L1MC4 LINE L1 7902 7924 -118 1916 158 3 3 chr3 155194565 155194868 -72329710 + AluJo SINE Alu 1 303 -9 231 209 119 67 chr3 155194868 155194934 -72329644 + L1MC4 LINE L1 7924 8005 -37 2032 149 3 3 chr3 155194934 155195243 -72329335 - AluSx SINE Alu -3 309 1 231 209 119 67 chr3 155195243 155195284 -72329294 + L1MC4 LINE L1 8005 8042 0 1819 171 6 22 chr3 155195840 155196156 -72328422 - AluJb SINE Alu -1 311 1 412 247 21 0 chr3 155196299 155196396 -72328182 + L2 LINE L2 3139 3237 -35 1616 106 4 47 chr3 155196684 155196940 -72327638 + AluSg SINE Alu 1 245 -65 356 110 134 85 chr3 155196940 155197022 -72327556 + AluSc SINE Alu 204 289 -10 4314 233 39 66 chr3 155197022 155198014 -72326564 - L1MB4 LINE L1 -2 6178 5160 2003 129 0 42 chr3 155198014 155198325 -72326253 - AluSx SINE Alu -14 298 1 4314 233 39 66 chr3 155198325 155199821 -72324757 - L1MB4 LINE L1 -1020 5160 3773 537 186 71 64 chr3 155199823 155199963 -72324615 - L1MC1 LINE L1 -5 6328 6188 * 3677 213 45 7 chr3 155199955 155199974 -72324604 - L1M4 LINE L1 -1742 4902 4885 2054 120 25 103 chr3 155199974 155200381 -72324197 - THE1C LTR MaLR 0 375 1 3677 213 45 7 chr3 155200381 155201212 -72323366 - L1M4 LINE L1 -1759 4885 4020 3928 219 113 40 chr3 155201212 155202129 -72322449 - L1M4 LINE L1 -4483 2163 1315 2030 134 0 25 chr3 155202129 155202450 -72322128 + AluSq SINE Alu 1 313 0 3928 219 113 40 chr3 155202450 155202741 -72321837 - L1M4 LINE L1 -5331 1315 1047 754 212 0 0 chr3 155202741 155202873 -72321705 - FLAM_C SINE Alu -1 132 1 3928 219 113 40 chr3 155202873 155203417 -72321161 - L1M4 LINE L1 -5599 1047 350 2167 122 10 0 chr3 155203521 155203817 -72320761 - AluSx SINE Alu -13 299 1 758 146 9 0 chr3 155203818 155203928 -72320650 - FLAM_A SINE Alu -9 133 23 1994 125 26 7 chr3 155203979 155204284 -72320294 - AluSx SINE Alu -1 311 1 953 198 90 56 chr3 155204286 155204452 -72320126 - L1M4 LINE L1 -2190 3956 3797 2311 80 3 0 chr3 155204452 155204739 -72319839 - AluY SINE Alu -23 288 1 953 198 90 56 chr3 155204739 155204895 -72319683 - L1M4 LINE L1 -2349 3797 3623 354 291 176 12 chr3 155204923 155205088 -72319490 - MIR SINE MIR -17 245 54 1261 254 116 46 chr3 155207717 155208218 -72316360 - MLT1H LTR MaLR 0 549 14 1253 234 161 66 chr3 155209243 155209931 -72314647 - L1MC4 LINE L1 0 8042 7421 2134 104 29 0 chr3 155209931 155210211 -72314367 + AluSx SINE Alu 1 288 -24 1253 234 161 66 chr3 155210211 155210399 -72314179 - L1MC4 LINE L1 -621 7421 7252 2229 80 0 0 chr3 155210399 155210674 -72313904 - AluSc SINE Alu -2 307 33 1253 234 161 66 chr3 155210674 155211271 -72313307 - L1MC4 LINE L1 -790 7252 6311 237 65 0 0 chr3 155211658 155211689 -72312889 + (T)n Simple_repeat Simple_repeat 1 31 0 300 274 0 55 chr3 155212511 155212584 -72311994 - MIR SINE MIR -173 89 21 228 327 70 32 chr3 155212715 155212871 -72311707 - L3 LINE CR1 -43 1534 1373 1829 143 11 4 chr3 155213450 155213729 -72310849 + AluSx SINE Alu 1 281 -31 1648 147 50 21 chr3 155214152 155214431 -72310147 - AluJb SINE Alu -25 287 1 1997 126 77 28 chr3 155217573 155217887 -72306691 + MLT1B LTR MaLR 1 337 -53 2006 114 61 0 chr3 155217887 155218167 -72306411 + AluSc SINE Alu 1 297 -12 1997 126 77 28 chr3 155218167 155218216 -72306362 + MLT1B LTR MaLR 337 382 -8 348 213 25 38 chr3 155218221 155218301 -72306277 - L1MC5 LINE L1 -72 7889 7811 1973 86 124 0 chr3 155218782 155219049 -72305529 - AluSp SINE Alu -13 300 1 483 219 22 93 chr3 155219485 155219547 -72305031 - MIR SINE MIR -36 172 122 2325 73 3 3 chr3 155219547 155219836 -72304742 - AluSx SINE Alu -23 289 1 483 219 22 93 chr3 155219836 155219911 -72304667 - MIR SINE MIR -86 122 43 2328 88 0 7 chr3 155220650 155220946 -72303632 - AluSc SINE Alu -15 294 1 1278 191 16 107 chr3 155220951 155221270 -72303308 - AluJb SINE Alu -8 294 5 628 253 72 21 chr3 155222689 155222883 -72301695 + MIR SINE MIR 2 205 -57 2269 93 0 0 chr3 155223250 155223539 -72301039 - AluSx SINE Alu -21 291 3 1944 127 11 0 chr3 155223731 155224006 -72300572 - AluSx SINE Alu -24 288 11 784 165 47 0 chr3 155224089 155224216 -72300362 - FLAM_C SINE Alu 0 133 1 188 280 20 0 chr3 155224676 155224726 -72299852 + L2 LINE L2 2999 3049 -223 216 318 95 0 chr3 155224862 155224925 -72299653 + L2 LINE L2 3204 3272 0 204 321 0 0 chr3 155225285 155225341 -72299237 - MIR SINE MIR -11 251 196 191 299 13 26 chr3 155225347 155225424 -72299154 + MIR SINE MIR 185 260 -2 1845 127 69 7 chr3 155225444 155225735 -72298843 + AluJb SINE Alu 1 309 -3 2283 119 0 3 chr3 155225740 155226051 -72298527 + AluSx SINE Alu 1 310 -2 553 324 31 59 chr3 155226368 155226624 -72297954 - MIR SINE MIR -13 249 1 1478 187 22 18 chr3 155227060 155227333 -72297245 - AluJo SINE Alu -36 276 3 2166 254 57 94 chr3 155228344 155228499 -72296079 + L1M4b LINE L1 11 170 -6689 1865 106 56 7 chr3 155228499 155228783 -72295795 + AluSx SINE Alu 1 298 -14 2166 254 57 94 chr3 155228783 155229588 -72294990 + L1M4b LINE L1 170 936 -5923 385 178 56 11 chr3 155229605 155229695 -72294883 + L1MA9 LINE L1 6185 6278 -34 26 0 0 0 chr3 155230044 155230070 -72294508 + AT_rich Low_complexity Low_complexity 1 26 0 706 211 105 86 chr3 155230604 155230779 -72293799 + L1M4b LINE L1 1205 1390 -5469 2022 143 7 0 chr3 155230779 155231087 -72293491 - AluJb SINE Alu -2 310 1 706 211 105 86 chr3 155231087 155231215 -72293363 + L1M4b LINE L1 1390 1514 -5345 1693 169 58 23 chr3 155231219 155231567 -72293011 + MER47A DNA MER2_type 7 366 0 1787 257 43 21 chr3 155231568 155232234 -72292344 + L1M4b LINE L1 1516 2196 -4763 494 202 0 0 chr3 155232234 155232323 -72292255 - FRAM SINE Alu -78 98 10 417 281 74 56 chr3 155232324 155232594 -72291984 + L1M4b LINE L1 2411 2685 -4453 2797 236 72 44 chr3 155232630 155232926 -72291652 + L1MEc LINE L1 1739 2025 -4190 1946 135 0 30 chr3 155232926 155233229 -72291349 - AluSx SINE Alu -18 294 1 2797 236 72 44 chr3 155233229 155233698 -72290880 + L1MEc LINE L1 2025 2479 -3736 2334 110 3 0 chr3 155233698 155234007 -72290571 + AluSx SINE Alu 1 310 -2 2797 236 72 44 chr3 155234007 155234598 -72289980 + L1MEc LINE L1 2479 3102 -3113 592 173 47 0 chr3 155234685 155234812 -72289766 - FLAM_A SINE Alu 0 133 1 195 239 22 0 chr3 155234857 155234903 -72289675 + L2 LINE L2 3257 3303 -10 1608 158 55 15 chr3 155235018 155235291 -72289287 - AluJo SINE Alu -28 284 1 1184 150 0 0 chr3 155235367 155235547 -72289031 - AluSg/x SINE Alu -4 308 129 2514 65 0 3 chr3 155235563 155235870 -72288708 - AluY SINE Alu -5 306 1 1994 138 10 3 chr3 155236711 155237008 -72287570 - AluJb SINE Alu -13 299 1 1686 190 7 3 chr3 155237207 155237496 -72287082 - AluJo SINE Alu -22 290 1 1607 142 94 0 chr3 155238164 155238431 -72286147 - AluSx SINE Alu -20 292 1 872 279 165 35 chr3 155238772 155239167 -72285411 + L2 LINE L2 1442 1887 -1427 2190 81 11 0 chr3 155239297 155239570 -72285008 - AluY SINE Alu -15 296 21 247 250 40 13 chr3 155239830 155239906 -72284672 - L1MC4a LINE L1 -1879 5929 5852 684 297 14 3 chr3 155239909 155240131 -72284447 - L1M1 LINE L1 -518 5787 5560 34 62 0 12 chr3 155240211 155240251 -72284327 + AT_rich Low_complexity Low_complexity 1 40 -39 1612 184 3 7 chr3 155240251 155240534 -72284044 - AluJo SINE Alu -30 282 1 34 62 0 12 chr3 155240534 155240573 -72284005 + AT_rich Low_complexity Low_complexity 40 79 0 2215 111 0 10 chr3 155240575 155240881 -72283697 - AluSq SINE Alu -10 303 1 246 217 19 34 chr3 155240885 155240994 -72283584 - L1P LINE L1 -778 5394 5283 854 141 0 21 chr3 155241112 155241254 -72283324 + FLAM_C SINE Alu 5 143 0 313 292 102 35 chr3 155241325 155241551 -72283027 - L1M4 LINE L1 -1082 5064 4824 1781 144 30 20 chr3 155242384 155242682 -72281896 - AluJo SINE Alu -11 301 1 2214 132 0 0 chr3 155242695 155243005 -72281573 - AluSx SINE Alu -2 310 1 188 401 116 0 chr3 155243964 155244111 -72280467 + L3 LINE CR1 40 203 -1374 298 283 77 15 chr3 155244137 155244254 -72280324 - MER5A DNA MER1_type -54 135 2 447 309 194 18 chr3 155244255 155244533 -72280045 + L3 LINE CR1 209 535 -1042 506 270 90 25 chr3 155244733 155244933 -72279645 + MIR SINE MIR 20 232 -30 211 333 122 19 chr3 155244946 155245102 -72279476 + L2 LINE L2 3125 3296 -17 204 274 123 0 chr3 155245258 155245331 -72279247 + L3 LINE CR1 1044 1125 -452 234 205 0 0 chr3 155245987 155246026 -72278552 + MER2 DNA MER2_type 306 344 -1 * 546 222 41 0 chr3 155246026 155246123 -72278455 - MER2 DNA MER2_type -129 110 1 570 305 19 5 chr3 155247164 155247377 -72277201 + L1MC4a LINE L1 5641 5856 -1952 745 168 0 40 chr3 155247464 155247613 -72276965 - FLAM_C SINE Alu 0 143 1 22 0 0 0 chr3 155248057 155248079 -72276499 + AT_rich Low_complexity Low_complexity 1 22 0 5425 152 88 34 chr3 155248404 155248672 -72275906 + Tigger3b DNA MER2_type 14 266 -2762 402 21 0 0 chr3 155248672 155248719 -72275859 + (CTATA)n Simple_repeat Simple_repeat 1 47 0 5425 152 88 34 chr3 155248719 155248989 -72275589 + Tigger3b DNA MER2_type 266 520 -2508 25747 35 7 0 chr3 155248989 155252895 -72271683 - L1PA4 LINE L1 -8 6147 2219 5425 152 88 34 chr3 155252895 155252957 -72271621 + Tigger3b DNA MER2_type 520 577 -2451 2247 102 3 0 chr3 155252957 155253251 -72271327 + AluSp SINE Alu 1 295 -18 5425 152 88 34 chr3 155253251 155253803 -72270775 + Tigger3b DNA MER2_type 577 1231 0 1991 114 7 7 chr3 155254310 155254633 -72269945 + AluSg SINE Alu 1 323 0 379 0 0 0 chr3 155254591 155254686 -72269892 + (TAAA)n Simple_repeat Simple_repeat 2 96 0 915 333 95 16 chr3 155254987 155255410 -72269168 + MER115 DNA AcHobo 35 490 -203 1954 119 6 63 chr3 155255410 155255728 -72268850 - AluSq SINE Alu -11 302 3 2041 139 13 3 chr3 155255932 155256235 -72268343 + AluSx SINE Alu 1 306 -6 643 155 16 39 chr3 155256336 155256465 -72268113 - FLAM_C SINE Alu -17 126 1 715 213 0 77 chr3 155256552 155256735 -72267843 - FAM SINE Alu -5 170 2 1481 152 76 32 chr3 155256753 155257030 -72267548 - AluSx SINE Alu -16 296 8 2116 115 13 23 chr3 155257836 155258141 -72266437 + AluSx SINE Alu 2 303 -9 21 36 0 0 chr3 155259231 155259259 -72265319 + AT_rich Low_complexity Low_complexity 1 28 0 1800 120 8 4 chr3 155259820 155260086 -72264492 - AluSx SINE Alu -2 310 44 2114 115 7 16 chr3 155260295 155260599 -72263979 - AluSx SINE Alu -11 301 1 230 259 35 0 chr3 155260607 155260665 -72263913 - MIR SINE MIR -41 221 162 1157 257 116 65 chr3 155260673 155260817 -72263761 + L1MC4a LINE L1 5548 5683 -2125 2155 112 7 0 chr3 155260817 155261104 -72263474 - AluSc SINE Alu -20 289 1 1157 257 116 65 chr3 155261104 155261554 -72263024 + L1MC4a LINE L1 5683 6172 -1636 203 173 19 0 chr3 155261624 155261676 -72262902 + (TATG)n Simple_repeat Simple_repeat 4 56 0 317 140 0 0 chr3 155261677 155261727 -72262851 - L1MC4 LINE L1 -1340 6702 6653 251 221 151 12 chr3 155261748 155261834 -72262744 + L1MC4 LINE L1 6890 6987 -1055 14091 149 50 38 chr3 155261972 155262092 -72262486 + Tigger2 DNA MER2_type 1 118 -2600 2312 68 7 16 chr3 155262092 155262401 -72262177 + AluY SINE Alu 1 306 -5 14091 149 50 38 chr3 155262401 155262623 -72261955 + Tigger2 DNA MER2_type 118 336 -2382 1867 150 10 3 chr3 155262623 155262753 -72261825 + AluSx SINE Alu 1 129 -183 2250 65 31 7 chr3 155262753 155263046 -72261532 + AluY SINE Alu 1 300 -11 1867 150 10 3 chr3 155263046 155263209 -72261369 + AluSx SINE Alu 129 296 -16 14091 149 50 38 chr3 155263209 155264819 -72259759 + Tigger2 DNA MER2_type 336 1925 -793 1688 141 7 7 chr3 155264819 155265089 -72259489 + AluSx SINE Alu 1 270 -42 2178 105 0 0 chr3 155265091 155265386 -72259192 + AluSq SINE Alu 1 295 -18 14091 149 50 38 chr3 155265386 155266050 -72258528 + Tigger2 DNA MER2_type 1925 2658 -60 613 130 70 0 chr3 155266050 155266150 -72258428 - U6 snRNA snRNA 0 107 1 14091 149 50 38 chr3 155266150 155266210 -72258368 + Tigger2 DNA MER2_type 2658 2716 -2 253 216 0 0 chr3 155266213 155266264 -72258314 - L1MC5 LINE L1 -209 7752 7702 2176 259 88 31 chr3 155266266 155266492 -72258086 - L1M4c LINE L1 -4299 2526 2314 1521 108 31 0 chr3 155266492 155266715 -72257863 + MER30 DNA MER1_type 1 230 0 2176 259 88 31 chr3 155266715 155266759 -72257819 - L1M4c LINE L1 -4511 2314 2274 429 66 0 0 chr3 155266759 155266820 -72257758 + (CA)n Simple_repeat Simple_repeat 2 62 0 2176 259 88 31 chr3 155266820 155266869 -72257709 - L1M4c LINE L1 -4551 2274 2229 2143 139 0 0 chr3 155266869 155267170 -72257408 - AluSx SINE Alu -11 301 1 2176 259 88 31 chr3 155267170 155267243 -72257335 - L1M4c LINE L1 -4596 2229 2162 2182 113 3 0 chr3 155267243 155267536 -72257042 - AluSg SINE Alu -16 294 1 2176 259 88 31 chr3 155267536 155268450 -72256128 - L1M4c LINE L1 -4663 2162 1021 1895 120 10 37 chr3 155268461 155268760 -72255818 - AluSx SINE Alu -10 302 12 239 275 31 62 chr3 155268865 155269025 -72255553 - L1M4c LINE L1 -6333 209 55 376 318 32 45 chr3 155269098 155269252 -72255326 - MIR SINE MIR -93 169 18 25 0 0 0 chr3 155269267 155269292 -72255286 + AT_rich Low_complexity Low_complexity 1 25 0 461 308 96 31 chr3 155270045 155270431 -72254147 - L1MC/D LINE L1 -2024 5784 5374 294 262 75 0 chr3 155270544 155270651 -72253927 - L1MC/D LINE L1 -914 5232 5118 210 324 0 19 chr3 155270717 155270825 -72253753 + CT-rich Low_complexity Low_complexity 2 107 0 737 258 109 18 chr3 155271170 155271399 -72253179 - MIR SINE MIR -12 250 1 1976 136 0 3 chr3 155271630 155271931 -72252647 - AluSg SINE Alu -10 300 1 2046 119 14 0 chr3 155271933 155272219 -72252359 - AluSx SINE Alu -22 290 1 2179 115 3 0 chr3 155272248 155272544 -72252034 - AluSx SINE Alu -15 297 1 464 316 142 51 chr3 155273906 155274195 -72250383 + L2 LINE L2 2688 2949 -364 1924 124 58 7 chr3 155274195 155274486 -72250092 - AluSx SINE Alu -4 308 3 464 316 142 51 chr3 155274486 155274764 -72249814 + L2 LINE L2 2949 3313 0 351 270 37 86 chr3 155274819 155274878 -72249700 - MIR3 SINE MIR -8 200 140 2264 89 6 16 chr3 155274878 155275193 -72249385 + AluSx SINE Alu 1 312 0 351 270 37 86 chr3 155275193 155275296 -72249282 - MIR3 SINE MIR -68 140 46 453 19 0 0 chr3 155275354 155275408 -72249170 + (CA)n Simple_repeat Simple_repeat 2 55 0 22691 34 6 0 chr3 155275642 155278343 -72246235 - L1P LINE L1 -1210 4936 2219 3048 150 100 22 chr3 155278358 155278405 -72246173 + Tigger3(Golem) DNA MER2_type 2383 2425 -604 2265 102 3 0 chr3 155278405 155278699 -72245879 + AluSp SINE Alu 1 295 -18 3048 150 100 22 chr3 155278699 155279251 -72245327 + Tigger3(Golem) DNA MER2_type 2425 3029 0 2416 73 3 3 chr3 155279758 155280058 -72244520 + AluY SINE Alu 1 300 -11 481 233 164 6 chr3 155280059 155280218 -72244360 + MER115 DNA AcHobo 510 693 0 202 394 30 0 chr3 155280761 155280893 -72243685 - L2 LINE L2 0 3313 3178 1395 167 105 8 chr3 155281067 155281324 -72243254 + AluJo SINE Alu 5 286 -26 273 302 42 0 chr3 155281332 155281428 -72243150 - MIR SINE MIR -13 249 150 338 357 77 49 chr3 155281842 155282079 -72242499 - L2 LINE L2 -112 3160 2910 2272 104 0 0 chr3 155282079 155282376 -72242202 + AluSx SINE Alu 1 297 -15 338 357 77 49 chr3 155282376 155282463 -72242115 - L2 LINE L2 -362 2910 2827 509 266 182 15 chr3 155282658 155282861 -72241717 - MIR SINE MIR -14 248 12 2141 116 0 3 chr3 155282898 155283192 -72241386 - AluSc SINE Alu -16 293 1 2262 114 0 13 chr3 155283390 155283705 -72240873 + AluSx SINE Alu 1 311 -1 812 329 130 16 chr3 155283734 155284294 -72240284 - L2 LINE L2 -955 2359 1736 320 329 21 43 chr3 155284410 155284550 -72240028 + MIR3 SINE MIR 69 205 -3 276 343 0 0 chr3 155284606 155284679 -72239899 + L2 LINE L2 3236 3308 -5 2297 99 0 26 chr3 155285050 155285363 -72239215 - AluSq SINE Alu -8 305 1 839 208 71 47 chr3 155286186 155286326 -72238252 - MIR SINE MIR 0 262 112 2631 58 0 0 chr3 155286326 155286636 -72237942 + AluY SINE Alu 1 310 -1 839 208 71 47 chr3 155286636 155286750 -72237828 - MIR SINE MIR -150 112 2 2126 146 3 0 chr3 155286821 155287130 -72237448 + AluSx SINE Alu 1 310 -2 2054 131 10 7 chr3 155287139 155287437 -72237141 + AluSx SINE Alu 1 299 -13 1614 177 32 0 chr3 155287819 155288101 -72236477 + AluJo SINE Alu 1 291 -21 1840 163 3 3 chr3 155288372 155288654 -72235924 - AluJo SINE Alu -30 282 1 2395 90 0 10 chr3 155288708 155289020 -72235558 + AluSg SINE Alu 1 309 -1 520 147 0 74 chr3 155289308 155289403 -72235175 - AluJb SINE Alu -138 174 87 1165 199 28 0 chr3 155289790 155290001 -72234577 - MER58A DNA MER1_type -4 220 4 455 314 57 0 chr3 155290814 155290973 -72233605 - MIR SINE MIR -73 189 22 2298 106 0 0 chr3 155291017 155291318 -72233260 - AluSg SINE Alu -8 302 2 23 54 0 0 chr3 155291593 155291630 -72232948 + AT_rich Low_complexity Low_complexity 1 37 0 627 131 0 0 chr3 155291630 155291714 -72232864 - FLAM_C SINE Alu -25 118 35 1296 105 89 11 chr3 155291972 155292163 -72232415 - AluSg/x SINE Alu -22 290 85 2205 130 0 0 chr3 155292164 155292472 -72232106 - AluSx SINE Alu -4 308 1 2194 116 0 3 chr3 155292480 155292783 -72231795 - AluSg SINE Alu -8 302 1 2592 72 0 0 chr3 155294021 155294327 -72230251 - AluSc SINE Alu -3 306 1 946 257 129 35 chr3 155294748 155295137 -72229441 + L1ME4a LINE L1 5561 6007 -114 2212 119 0 0 chr3 155295137 155295448 -72229130 + AluY SINE Alu 1 311 0 946 257 129 35 chr3 155295448 155295548 -72229030 + L1ME4a LINE L1 6007 6096 -25 25 65 0 0 chr3 155295589 155295635 -72228943 + AT_rich Low_complexity Low_complexity 1 46 0 1175 136 0 11 chr3 155295994 155296171 -72228407 + AluSg/x SINE Alu 118 292 -18 2166 138 0 7 chr3 155296243 155296548 -72228030 - AluSx SINE Alu -9 303 1 2235 100 0 20 chr3 155296559 155296858 -72227720 - AluSc SINE Alu -16 293 1 1443 149 62 59 chr3 155297159 155297293 -72227285 + AluJb SINE Alu 14 146 -166 1936 87 47 96 chr3 155297293 155297615 -72226963 + AluSq SINE Alu 1 306 -7 1443 149 62 59 chr3 155297615 155297768 -72226810 + AluJb SINE Alu 146 302 -10 2123 113 7 17 chr3 155297994 155298296 -72226282 + AluSx SINE Alu 1 299 -13 1855 143 7 0 chr3 155298581 155298853 -72225725 - AluSx SINE Alu -36 276 3 1986 119 3 19 chr3 155298861 155299173 -72225405 - AluY SINE Alu -4 307 1 2426 77 7 0 chr3 155299173 155299472 -72225106 - AluSg SINE Alu -9 301 1 250 285 158 62 chr3 155299904 155300195 -72224383 - L1MEd LINE L1 -5357 762 444 2135 109 0 40 chr3 155300600 155300769 -72223809 - AluSq SINE Alu -19 294 141 1735 141 28 14 chr3 155300769 155301060 -72223518 - AluSx SINE Alu -17 295 1 2135 109 0 40 chr3 155301060 155301192 -72223386 - AluSq SINE Alu -172 141 5 1034 159 4 116 chr3 155302104 155302256 -72222322 - MER115 DNA AcHobo 0 693 574 2032 139 0 3 chr3 155302256 155302557 -72222021 + AluSx SINE Alu 1 300 -12 1034 159 4 116 chr3 155302557 155302637 -72221941 - MER115 DNA AcHobo -119 574 487 2018 99 0 104 chr3 155302637 155302982 -72221596 - AluSg SINE Alu -1 309 1 1191 235 46 111 chr3 155303383 155303450 -72221128 + MLT1J LTR MaLR 1 71 -440 2293 98 3 0 chr3 155303450 155303747 -72220831 + AluSg SINE Alu 1 298 -12 1191 235 46 111 chr3 155303747 155304219 -72220359 + MLT1J LTR MaLR 71 505 -6 745 117 31 47 chr3 155304381 155304509 -72220069 - FLAM_C SINE Alu -9 134 9 2341 100 3 0 chr3 155304980 155305289 -72219289 + AluSx SINE Alu 1 310 -2 766 301 68 27 chr3 155305453 155305822 -72218756 + L2 LINE L2 2031 2414 -900 339 237 108 0 chr3 155305823 155305916 -72218662 + MIR SINE MIR 5 107 -155 570 234 163 0 chr3 155306148 155306289 -72218289 - MER5A DNA MER1_type -15 174 11 840 102 62 23 chr3 155306487 155306615 -72217963 + FRAM SINE Alu 33 165 -11 2226 134 3 0 chr3 155306930 155307237 -72217341 - AluSx SINE Alu -4 308 1 1979 119 50 0 chr3 155307581 155307859 -72216719 - AluSx SINE Alu -20 292 1 2261 143 34 14 chr3 155307889 155308246 -72216332 + THE1B LTR MaLR 1 364 0 560 214 10 0 chr3 155308572 155308670 -72215908 + AluSc SINE Alu 121 219 -90 2257 124 0 0 chr3 155308768 155309075 -72215503 - AluSx SINE Alu -5 307 1 21 0 0 0 chr3 155309123 155309144 -72215434 + AT_rich Low_complexity Low_complexity 1 21 0 1881 145 0 0 chr3 155309658 155309934 -72214644 + AluSx SINE Alu 1 276 -36 191 256 0 0 chr3 155310017 155310056 -72214522 + MIR SINE MIR 157 195 -67 1370 181 113 21 chr3 155310500 155310782 -72213796 + AluJo SINE Alu 1 308 -4 214 208 21 0 chr3 155311362 155311410 -72213168 - MIR3 SINE MIR -40 168 120 22 56 0 0 chr3 155311492 155311528 -72213050 + AT_rich Low_complexity Low_complexity 1 36 0 2101 132 0 0 chr3 155311821 155312116 -72212462 - AluSx SINE Alu -17 295 1 445 279 149 5 chr3 155312274 155312496 -72212082 - MER112 DNA MER1_type 0 256 3 1171 172 19 0 chr3 155312604 155312819 -72211759 - AluJb SINE Alu -13 299 81 771 136 86 14 chr3 155313230 155313370 -72211208 + L1MB3 LINE L1 6025 6174 -9 414 316 56 48 chr3 155313386 155313744 -72210834 - L1M4 LINE L1 -3653 2493 2133 2080 134 0 10 chr3 155314159 155314465 -72210113 - AluSx SINE Alu -9 303 1 2117 92 17 14 chr3 155314553 155314845 -72209733 - AluSx SINE Alu -18 294 2 1806 158 6 25 chr3 155315376 155315693 -72208885 - AluSx SINE Alu -1 311 1 21 0 0 0 chr3 155315806 155315827 -72208751 + AT_rich Low_complexity Low_complexity 1 21 0 2206 114 3 0 chr3 155316126 155316425 -72208153 + AluSx SINE Alu 1 300 -12 2210 84 28 0 chr3 155316927 155317214 -72207364 + AluY SINE Alu 1 295 -16 335 308 0 0 chr3 155317356 155317447 -72207131 - L1MC4 LINE L1 -1339 6703 6613 22 35 0 0 chr3 155317450 155317479 -72207099 + AT_rich Low_complexity Low_complexity 1 29 0 2288 111 3 0 chr3 155317683 155317990 -72206588 + AluSp SINE Alu 1 308 -5 1943 164 0 3 chr3 155318764 155319062 -72205516 - AluSx SINE Alu -15 297 1 288 172 0 17 chr3 155319062 155319120 -72205458 + Alu SINE Alu 246 302 0 291 226 0 3 chr3 155319429 155319489 -72205089 + AluSp SINE Alu 136 186 -117 16025 64 2 2 chr3 155319493 155321572 -72203006 + L1P LINE L1 935 3012 -3134 21453 45 13 2 chr3 155321672 155326174 -72198404 + L1PA5 LINE L1 1616 6153 -1 422 248 67 0 chr3 155326174 155326279 -72198299 + FAM SINE Alu 55 166 -19 386 223 77 77 chr3 155326335 155326555 -72198023 + L1M4 LINE L1 4560 4779 -1367 1645 187 7 3 chr3 155326883 155327177 -72197401 - AluJb SINE Alu -17 295 1 3267 117 38 47 chr3 155327936 155328468 -72196110 + MER1A DNA MER1_type 1 527 0 195 280 0 0 chr3 155329071 155329121 -72195457 - L2 LINE L2 0 3272 3223 212 367 16 62 chr3 155329356 155329484 -72195094 + MIR SINE MIR 20 141 -121 386 330 67 10 chr3 155329502 155329696 -72194882 + MER63A DNA MER1_type 1 205 -5 493 265 47 65 chr3 155329772 155329942 -72194636 + LTR16A1 LTR ERVL 1 167 -290 877 267 31 49 chr3 155329983 155330179 -72194399 + LTR16A1 LTR ERVL 173 364 -93 2242 130 0 0 chr3 155330179 155330487 -72194091 - AluSq SINE Alu -5 308 1 877 267 31 49 chr3 155330487 155330578 -72194000 + LTR16A1 LTR ERVL 364 455 -2 377 289 70 26 chr3 155330580 155330736 -72193842 + HERV16 LTR ERVL 1 163 -4833 21 0 0 0 chr3 155332829 155332850 -72191728 + AT_rich Low_complexity Low_complexity 1 21 0 2040 125 4 0 chr3 155332850 155333130 -72191448 - AluSx SINE Alu -31 281 1 979 234 44 4 chr3 155333845 155334093 -72190485 + MIR SINE MIR 4 261 -1 43067 30 22 1 chr3 155334119 155340144 -72184434 - L1HS LINE L1 -2 6153 1 2287 98 0 0 chr3 155340216 155340511 -72184067 + AluY SINE Alu 1 295 -16 292 303 71 20 chr3 155340789 155341052 -72183526 - L1MC4a LINE L1 -241 5929 5656 438 248 96 25 chr3 155341054 155341211 -72183367 - MER112 DNA MER1_type -1 259 92 279 0 0 0 chr3 155342040 155342071 -72182507 + (A)n Simple_repeat Simple_repeat 1 31 0 2716 95 3 0 chr3 155342074 155342444 -72182134 - L1PA8A LINE L1 -30 6101 5731 1561 240 133 26 chr3 155342745 155343163 -72181415 + MLT1F LTR MaLR 1 483 -59 2250 113 0 0 chr3 155343163 155343463 -72181115 - AluSx SINE Alu -12 300 1 1561 240 133 26 chr3 155343463 155343526 -72181052 + MLT1F LTR MaLR 483 538 -4 21 57 0 0 chr3 155343895 155343930 -72180648 + AT_rich Low_complexity Low_complexity 1 35 0 218 28 0 56 chr3 155345059 155345095 -72179483 + (TTTAA)n Simple_repeat Simple_repeat 3 36 0 1917 124 48 0 chr3 155345095 155345368 -72179210 - AluSx SINE Alu -26 286 1 259 273 48 43 chr3 155345969 155346156 -72178422 - L1MEc LINE L1 -4925 1385 1198 927 172 0 0 chr3 155346168 155346319 -72178259 - FRAM SINE Alu -12 154 4 336 323 37 25 chr3 155346325 155346486 -72178092 - L1MEc LINE L1 -4971 1148 986 307 274 42 42 chr3 155346583 155346751 -72177827 - L1MC5 LINE L1 -492 7469 7302 1867 132 11 4 chr3 155346751 155347059 -72177519 + AluSx SINE Alu 1 310 0 319 267 37 43 chr3 155347519 155347680 -72176898 + L1MEc LINE L1 55 214 -6182 335 310 39 47 chr3 155347718 155347976 -72176602 + L1MEc LINE L1 1690 1945 -4451 2087 253 111 29 chr3 155347998 155348102 -72176476 + L1MEc LINE L1 3049 3143 -3072 1770 177 7 3 chr3 155348102 155348390 -72176188 + AluJb SINE Alu 1 289 -23 2087 253 111 29 chr3 155348390 155348423 -72176155 + L1MEc LINE L1 3143 3172 -3043 1902 161 0 0 chr3 155348423 155348715 -72175863 + AluJb SINE Alu 11 302 -10 2087 253 111 29 chr3 155348715 155349030 -72175548 + L1MEc LINE L1 3172 3460 -2755 1528 189 10 16 chr3 155349030 155349343 -72175235 + AluJo SINE Alu 2 312 0 2087 253 111 29 chr3 155349343 155349906 -72174672 + L1MEc LINE L1 3460 4150 -2065 1778 241 84 24 chr3 155349904 155350543 -72174035 + L1MEc LINE L1 4603 5280 -935 * 2125 109 0 14 chr3 155350596 155350727 -72173851 + AluSq SINE Alu 6 137 -173 2322 88 0 10 chr3 155350727 155351035 -72173543 + AluY SINE Alu 1 305 -6 2125 109 0 14 chr3 155351035 155351212 -72173366 + AluSq SINE Alu 137 310 0 1993 259 75 37 chr3 155351244 155352600 -72171978 + L1M4 LINE L1 2554 3987 -2159 2328 52 3 48 chr3 155352600 155352909 -72171669 + AluY SINE Alu 1 295 -16 1993 259 75 37 chr3 155352909 155352952 -72171626 + L1M4 LINE L1 3987 4027 -2119 2290 94 3 0 chr3 155352952 155353251 -72171327 + AluSp SINE Alu 1 300 -13 207 0 0 0 chr3 155353252 155353275 -72171303 + (TA)n Simple_repeat Simple_repeat 2 24 0 491 128 12 0 chr3 155353275 155353361 -72171217 + (CA)n Simple_repeat Simple_repeat 2 88 0 668 198 49 133 chr3 155353404 155353743 -72170835 + L1ME1 LINE L1 5867 6334 0 1021 254 8 8 chr3 155353981 155354217 -72170361 + MER8 DNA MER2_type 4 239 0 1567 163 89 0 chr3 155354229 155354499 -72170079 - AluJb SINE Alu -14 298 5 27 0 0 0 chr3 155354871 155354898 -72169680 + AT_rich Low_complexity Low_complexity 1 27 0 23 78 0 0 chr3 155356200 155356251 -72168327 + AT_rich Low_complexity Low_complexity 1 51 0 1720 199 126 19 chr3 155356332 155356754 -72167824 + MLT1C LTR MaLR 1 467 0 2215 93 14 0 chr3 155356946 155357237 -72167341 + AluSp SINE Alu 1 295 -18 374 343 6 24 chr3 155358149 155358315 -72166263 + L2 LINE L2 2247 2409 -905 2303 97 0 3 chr3 155358783 155359083 -72165495 - AluSq SINE Alu -14 299 1 496 249 297 0 chr3 155360386 155360635 -72163943 + MER5C DNA MER1_type 1 323 -1 563 319 218 3 chr3 155360671 155361057 -72163521 - L2 LINE L2 -37 3276 2808 2052 117 0 46 chr3 155361395 155361720 -72162858 + AluSx SINE Alu 1 310 -2 237 277 48 24 chr3 155361826 155361909 -72162669 - L2 LINE L2 -1047 2267 2183 695 271 92 4 chr3 155362032 155362261 -72162317 - MIR SINE MIR -13 249 1 1632 168 29 42 chr3 155362403 155362712 -72161866 - AluJb SINE Alu -5 307 3 640 307 146 0 chr3 155362895 155363182 -72161396 - L2 LINE L2 -1271 2043 1715 1505 180 63 71 chr3 155363187 155363452 -72161126 + MLT2C2 LTR ERVL 1 267 -197 1633 206 4 0 chr3 155363452 155363758 -72160820 + AluJo SINE Alu 1 307 0 1505 180 63 71 chr3 155363758 155363884 -72160694 + MLT2C2 LTR ERVL 267 392 -72 217 211 0 0 chr3 155363895 155363933 -72160645 + (CGTG)n Simple_repeat Simple_repeat 3 40 0 255 79 0 0 chr3 155363934 155363972 -72160606 + (GA)n Simple_repeat Simple_repeat 1 38 0 225 125 0 25 chr3 155363983 155364023 -72160555 + MLT2C2 LTR ERVL 359 397 0 1179 300 152 31 chr3 155364027 155364790 -72159788 - L2 LINE L2 -1610 1704 850 571 143 0 0 chr3 155365094 155365185 -72159393 + L1PA13 LINE L1 5560 5650 -511 869 120 11 115 chr3 155365185 155365339 -72159239 + THE1C LTR MaLR 1 135 -240 1862 120 46 7 chr3 155365339 155365623 -72158955 - AluSg SINE Alu -15 295 1 869 120 11 115 chr3 155365623 155365651 -72158927 + THE1C LTR MaLR 135 164 -211 1181 112 0 12 chr3 155365657 155365826 -72158752 - AluSg/x SINE Alu -11 299 133 2216 97 21 0 chr3 155365831 155366120 -72158458 - AluSx SINE Alu -17 295 1 1059 150 35 53 chr3 155366121 155366348 -72158230 + THE1C LTR MaLR 153 375 0 3463 116 0 0 chr3 155366350 155366861 -72157717 + L1PA13 LINE L1 5648 6158 -5 716 170 0 30 chr3 155367019 155367202 -72157376 + FLAM_C SINE Alu 3 181 0 1099 154 12 0 chr3 155367203 155367365 -72157213 + AluJb SINE Alu 130 293 -19 260 347 20 14 chr3 155367448 155367595 -72156983 + HAL1 LINE L1 328 475 -2032 257 276 40 0 chr3 155367901 155367977 -72156601 + HAL1 LINE L1 804 882 -1625 1827 132 3 40 chr3 155368112 155368415 -72156163 + AluSx SINE Alu 1 292 -20 650 254 161 32 chr3 155368558 155368905 -72155673 + HAL1 LINE L1 1395 1786 -721 21 36 0 0 chr3 155368962 155368990 -72155588 + AT_rich Low_complexity Low_complexity 1 28 0 6630 53 1 0 chr3 155369297 155370120 -72154458 + L1PA6 LINE L1 5329 6152 -2 1962 146 0 0 chr3 155370131 155370418 -72154160 + AluSx SINE Alu 1 287 -25 364 286 59 0 chr3 155370519 155370638 -72153940 - MIR SINE MIR -65 197 72 28 29 0 0 chr3 155371203 155371238 -72153340 + AT_rich Low_complexity Low_complexity 1 35 0 1286 210 50 8 chr3 155371285 155371547 -72153031 + AluJb SINE Alu 1 273 -39 413 300 29 3 chr3 155371799 155371984 -72152594 - MIR SINE MIR -24 238 5 328 231 17 5 chr3 155375222 155375343 -72149235 + MER5A DNA MER1_type 7 189 0 22 35 0 0 chr3 155376153 155376182 -72148396 + AT_rich Low_complexity Low_complexity 1 29 0 36693 66 4 5 chr3 155377625 155383434 -72141144 - L1PA5 LINE L1 -7 6147 344 5658 209 77 38 chr3 155383440 155383716 -72140862 + L1MA4A LINE L1 1639 1903 -4945 1419 199 79 4 chr3 155383716 155383983 -72140595 + AluSx SINE Alu 1 287 -25 230 49 0 49 chr3 155383987 155384028 -72140550 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 5658 209 77 38 chr3 155384028 155385468 -72139110 + L1MA4A LINE L1 1905 3288 -3560 351 122 0 0 chr3 155385468 155385517 -72139061 - 5S rRNA rRNA -72 49 1 5658 209 77 38 chr3 155385517 155385835 -72138743 + L1MA4A LINE L1 3288 3592 -3256 7067 29 5 2 chr3 155385835 155385872 -72138706 + L1PA2 LINE L1 5300 5335 -820 2056 120 7 0 chr3 155385872 155386156 -72138422 + AluSq SINE Alu 1 286 -27 7067 29 5 2 chr3 155386156 155386972 -72137606 + L1PA2 LINE L1 5335 6155 0 5658 209 77 38 chr3 155386972 155388364 -72136214 + L1MA4A LINE L1 3592 5257 -1591 2066 180 32 10 chr3 155388435 155388840 -72135738 - MSTB LTR MaLR -12 414 1 5569 148 28 32 chr3 155388840 155390429 -72134149 + L1MA4A LINE L1 5254 6835 -170 2024 145 0 0 chr3 155390429 155390739 -72133839 + AluSx SINE Alu 1 310 0 5569 148 28 32 chr3 155390739 155390910 -72133668 + L1MA4A LINE L1 6835 7005 0 951 189 64 75 chr3 155391476 155391511 -72133067 + MIR SINE MIR 1 35 -227 1817 114 4 11 chr3 155391511 155391775 -72132803 + AluSx SINE Alu 45 306 -6 951 189 64 75 chr3 155391775 155392004 -72132574 + MIR SINE MIR 35 262 0 593 215 11 28 chr3 155392220 155392397 -72132181 + Charlie7 DNA MER1_type 29 202 -2410 234 81 0 0 chr3 155392530 155392567 -72132011 + (T)n Simple_repeat Simple_repeat 1 37 0 714 252 131 42 chr3 155392749 155392808 -72131770 - L1ME4a LINE L1 -72 6049 5997 2151 125 0 0 chr3 155392808 155393119 -72131459 - AluY SINE Alu 0 311 1 714 252 131 42 chr3 155393119 155393508 -72131070 - L1ME4a LINE L1 -124 5997 5561 2589 72 0 0 chr3 155393929 155394235 -72130343 + AluSc SINE Alu 1 306 -3 2194 116 0 3 chr3 155395473 155395776 -72128802 + AluSg SINE Alu 1 302 -8 2216 130 0 0 chr3 155395784 155396092 -72128486 + AluSx SINE Alu 1 308 -4 1301 105 89 11 chr3 155396093 155396284 -72128294 + AluSg/x SINE Alu 85 290 -22 591 131 0 0 chr3 155396542 155396626 -72127952 + FLAM_C SINE Alu 35 118 -25 23 54 0 0 chr3 155396626 155396663 -72127915 + AT_rich Low_complexity Low_complexity 1 37 0 2294 106 0 0 chr3 155396938 155397239 -72127339 + AluSg SINE Alu 2 302 -8 471 308 57 0 chr3 155397283 155397442 -72127136 + MIR SINE MIR 22 189 -73 183 262 24 0 chr3 155398166 155398208 -72126370 - L2 LINE L2 -19 3253 3211 1070 199 28 0 chr3 155398257 155398468 -72126110 + MER58A DNA MER1_type 4 220 -4 481 147 0 74 chr3 155398855 155398950 -72125628 + AluJb SINE Alu 87 174 -138 2370 84 0 13 chr3 155399238 155399549 -72125029 - AluSx SINE Alu -1 311 5 2085 108 0 35 chr3 155399710 155400025 -72124553 - AluSc SINE Alu -5 304 1 2292 111 0 13 chr3 155400223 155400538 -72124040 + AluSx SINE Alu 1 311 -1 758 332 128 21 chr3 155400567 155401131 -72123447 - L2 LINE L2 -955 2359 1736 340 331 21 41 chr3 155401242 155401387 -72123191 + MIR3 SINE MIR 64 205 -3 287 343 0 0 chr3 155401443 155401516 -72123062 + L2 LINE L2 3236 3308 -5 2317 96 0 26 chr3 155401887 155402200 -72122378 - AluSq SINE Alu -8 305 1 729 208 71 47 chr3 155403023 155403163 -72121415 - MIR SINE MIR 0 262 112 2613 58 0 0 chr3 155403163 155403473 -72121105 + AluY SINE Alu 1 310 -1 729 208 71 47 chr3 155403473 155403587 -72120991 - MIR SINE MIR -150 112 2 2136 149 3 0 chr3 155403658 155403967 -72120611 + AluSx SINE Alu 1 310 -2 2086 128 10 7 chr3 155403976 155404274 -72120304 + AluSx SINE Alu 1 299 -13 1624 177 32 0 chr3 155404656 155404938 -72119640 + AluJo SINE Alu 1 291 -21 1862 163 3 3 chr3 155405209 155405491 -72119087 - AluJo SINE Alu -30 282 1 2392 90 0 10 chr3 155405545 155405857 -72118721 + AluSg SINE Alu 1 309 -1 481 147 0 74 chr3 155406146 155406241 -72118337 - AluJb SINE Alu -138 174 87 1070 199 28 0 chr3 155406628 155406839 -72117739 - MER58A DNA MER1_type -4 220 4 183 262 24 0 chr3 155406888 155406930 -72117648 + L2 LINE L2 3211 3253 -19 471 308 57 0 chr3 155407652 155407811 -72116767 - MIR SINE MIR -73 189 22 2294 106 0 0 chr3 155407855 155408156 -72116422 - AluSg SINE Alu -8 302 2 23 54 0 0 chr3 155408431 155408468 -72116110 + AT_rich Low_complexity Low_complexity 1 37 0 591 131 0 0 chr3 155408468 155408552 -72116026 - FLAM_C SINE Alu -25 118 35 1316 99 89 11 chr3 155408810 155409001 -72115577 - AluSg/x SINE Alu -22 290 85 2216 130 0 0 chr3 155409002 155409310 -72115268 - AluSx SINE Alu -4 308 1 2194 116 0 3 chr3 155409318 155409621 -72114957 - AluSg SINE Alu -8 302 1 2554 75 0 0 chr3 155410859 155411164 -72113414 - AluSc SINE Alu -4 305 1 704 261 129 35 chr3 155411585 155411974 -72112604 + L1ME4a LINE L1 5561 6007 -114 2191 120 0 0 chr3 155411974 155412283 -72112295 + AluY SINE Alu 1 309 -2 704 261 129 35 chr3 155412283 155412383 -72112195 + L1ME4a LINE L1 6007 6096 -25 25 65 0 0 chr3 155412424 155412470 -72112108 + AT_rich Low_complexity Low_complexity 1 46 0 1189 118 26 31 chr3 155412829 155413024 -72111554 + AluSq SINE Alu 120 313 0 2327 103 0 0 chr3 155413027 155413328 -72111250 + AluSg SINE Alu 1 301 -9 1532 198 0 0 chr3 155413337 155413625 -72110953 + AluSx SINE Alu 1 288 -24 1115 128 78 55 chr3 155413646 155413864 -72110714 + AluSg/x SINE Alu 83 305 -5 1592 80 10 0 chr3 155414025 155414226 -72110352 + AluSx SINE Alu 5 207 -105 338 125 0 31 chr3 155414227 155414291 -72110287 + AluSx SINE Alu 241 302 0 500 243 111 11 chr3 155414428 155414667 -72109911 + L1ME3A LINE L1 5373 5638 -528 623 201 67 15 chr3 155414850 155414984 -72109594 + Charlie1 DNA MER1_type 7 147 -2614 * 1456 164 61 83 chr3 155414977 155415231 -72109347 + Charlie1 DNA MER1_type 2279 2537 -224 2310 102 0 0 chr3 155415231 155415534 -72109044 + AluSg SINE Alu 1 303 -7 1995 128 28 3 chr3 155415544 155415834 -72108744 + AluSx SINE Alu 1 297 -15 1456 164 61 83 chr3 155415834 155415853 -72108725 + Charlie1 DNA MER1_type 2546 2564 -197 1893 158 0 0 chr3 155415853 155416138 -72108440 + AluJb SINE Alu 12 296 -16 1456 164 61 83 chr3 155416138 155416346 -72108232 + Charlie1 DNA MER1_type 2564 2761 0 546 277 102 70 chr3 155416346 155416815 -72107763 + L1ME3A LINE L1 5649 6132 -38 21 57 0 0 chr3 155417188 155417223 -72107355 + AT_rich Low_complexity Low_complexity 1 35 0 39 60 0 0 chr3 155417374 155417441 -72107137 + AT_rich Low_complexity Low_complexity 1 67 0 2259 132 0 0 chr3 155417647 155417957 -72106621 + AluSx SINE Alu 1 310 -2 995 129 0 32 chr3 155417970 155418125 -72106453 + AluJb SINE Alu 1 150 -162 1340 142 49 0 chr3 155418248 155418453 -72106125 + AluSg/x SINE Alu 80 294 -16 2094 122 3 10 chr3 155418509 155418820 -72105758 - AluSg SINE Alu -1 309 1 464 111 0 49 chr3 155419262 155419343 -72105235 + MADE1 DNA Mariner 4 80 0 273 328 31 16 chr3 155419520 155419712 -72104866 + L1MC/D LINE L1 5577 5771 -2037 973 89 0 0 chr3 155419892 155420016 -72104562 - AluSg/x SINE Alu -14 296 173 2127 139 0 0 chr3 155420044 155420331 -72104247 + AluSx SINE Alu 3 289 -23 535 193 21 14 chr3 155420339 155420479 -72104099 + L1M4 LINE L1 4341 4481 -1665 2207 110 7 0 chr3 155420479 155420771 -72103807 + AluSq SINE Alu 1 294 -19 21 82 0 0 chr3 155421232 155421281 -72103297 + AT_rich Low_complexity Low_complexity 1 49 0 2233 227 62 35 chr3 155421285 155421973 -72102605 - L1MD2 LINE L1 -227 6132 5426 469 141 0 0 chr3 155421983 155422061 -72102517 - AluJb SINE Alu 0 312 235 1030 161 6 6 chr3 155422062 155422230 -72102348 - AluJb SINE Alu -144 168 1 284 165 13 76 chr3 155422238 155422262 -72102316 - L1MD2 LINE L1 -750 5416 5392 2165 155 0 0 chr3 155422262 155422572 -72102006 + AluSx SINE Alu 1 310 -2 284 165 13 76 chr3 155422572 155422626 -72101952 - L1MD2 LINE L1 -774 5392 5343 261 0 0 0 chr3 155422911 155422940 -72101638 + (CA)n Simple_repeat Simple_repeat 2 30 0 421 260 58 39 chr3 155423194 155423348 -72101230 - MLT1J1 LTR MaLR -4 442 286 214 279 0 16 chr3 155424485 155424546 -72100032 + CT-rich Low_complexity Low_complexity 2 61 0 * 216 234 43 0 chr3 155424502 155424549 -72100029 + polypyrimidine Low_complexity Low_complexity 1 49 0 2237 121 10 0 chr3 155424549 155424854 -72099724 - AluSx SINE Alu -2 310 3 1963 148 20 0 chr3 155424955 155425253 -72099325 - AluSx SINE Alu -8 304 1 2098 111 0 32 chr3 155425286 155425601 -72098977 + AluSg SINE Alu 1 305 -5 1599 80 10 0 chr3 155425762 155425963 -72098615 + AluSx SINE Alu 5 207 -105 367 125 0 31 chr3 155425964 155426028 -72098550 + AluSx SINE Alu 240 301 0 602 256 105 4 chr3 155426165 155426404 -72098174 + L1ME3A LINE L1 5373 5638 -528 682 204 66 15 chr3 155426587 155426724 -72097854 + Charlie1 DNA MER1_type 7 150 -2611 * 1702 164 59 81 chr3 155426714 155426968 -72097610 + Charlie1 DNA MER1_type 2279 2537 -224 2315 102 0 0 chr3 155426968 155427271 -72097307 + AluSg SINE Alu 1 303 -7 2002 124 28 3 chr3 155427281 155427571 -72097007 + AluSx SINE Alu 1 297 -15 1702 164 59 81 chr3 155427571 155427590 -72096988 + Charlie1 DNA MER1_type 2546 2564 -197 1883 158 0 0 chr3 155427590 155427875 -72096703 + AluJb SINE Alu 12 296 -16 1702 164 59 81 chr3 155427875 155428083 -72096495 + Charlie1 DNA MER1_type 2564 2761 0 698 279 102 70 chr3 155428083 155428552 -72096026 + L1ME3A LINE L1 5649 6132 -38 21 57 0 0 chr3 155428925 155428960 -72095618 + AT_rich Low_complexity Low_complexity 1 35 0 32 75 0 0 chr3 155429111 155429178 -72095400 + AT_rich Low_complexity Low_complexity 1 67 0 2276 115 0 3 chr3 155429384 155429688 -72094890 + AluSx SINE Alu 1 303 -9 1306 87 0 0 chr3 155429688 155429849 -72094729 + AluSq SINE Alu 134 294 -19 265 303 145 45 chr3 155430254 155430544 -72094034 + L1MEd LINE L1 444 762 -5357 2497 88 0 0 chr3 155430976 155431284 -72093294 + AluSg SINE Alu 1 308 -2 261 0 0 0 chr3 155431623 155431652 -72092926 + (CA)n Simple_repeat Simple_repeat 2 30 0 483 260 58 39 chr3 155431906 155432060 -72092518 - MLT1J1 LTR MaLR -4 442 286 2216 121 10 0 chr3 155433213 155433568 -72091010 - AluSx SINE Alu 0 360 3 1674 143 26 4 chr3 155433669 155433941 -72090637 - AluSx SINE Alu -8 304 27 2356 74 3 7 chr3 155435757 155436054 -72088524 + AluY SINE Alu 1 296 -15 21 0 0 0 chr3 155436609 155436630 -72087948 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr3 155436841 155436869 -72087709 + AT_rich Low_complexity Low_complexity 1 28 0 2133 144 0 0 chr3 155437445 155437757 -72086821 + AluSx SINE Alu 1 312 0 408 219 0 0 chr3 155437945 155438018 -72086560 + MER5B DNA MER1_type 2 74 -104 21 0 0 0 chr3 155438060 155438081 -72086497 + AT_rich Low_complexity Low_complexity 1 21 0 423 0 0 0 chr3 155438444 155438491 -72086087 + (CA)n Simple_repeat Simple_repeat 1 47 0 388 220 53 30 chr3 155438508 155438640 -72085938 + MER103 DNA DNA 3 137 -29 482 305 28 40 chr3 155439388 155439637 -72084941 + L1MC/D LINE L1 5528 5773 -2035 453 257 238 0 chr3 155439666 155439872 -72084706 - MIR SINE MIR -6 256 2 298 339 34 8 chr3 155440491 155440609 -72083969 + MIR SINE MIR 31 151 -111 194 309 86 25 chr3 155440616 155440697 -72083881 + L2 LINE L2 3210 3295 -18 * 221 333 0 0 chr3 155440694 155440775 -72083803 + MIR SINE MIR 166 246 -16 865 165 67 6 chr3 155441185 155441349 -72083229 + AluJb SINE Alu 132 305 -7 839 269 74 72 chr3 155441366 155441798 -72082780 + HERV16 LTR ERVL 4505 4903 -93 1505 122 116 135 chr3 155441798 155442272 -72082306 + MER4C LTR ERV1 1 465 0 839 269 74 72 chr3 155442272 155442367 -72082211 + HERV16 LTR ERVL 4903 4996 0 1141 246 66 83 chr3 155442367 155442394 -72082184 + LTR16B LTR ERVL 1 27 -437 2446 74 0 0 chr3 155442394 155442690 -72081888 + AluY SINE Alu 1 296 -15 1141 246 66 83 chr3 155442690 155443133 -72081445 + LTR16B LTR ERVL 27 463 -1 592 290 48 16 chr3 155443783 155443969 -72080609 + MLT1J2 LTR MaLR 259 450 0 2155 89 6 54 chr3 155444379 155444694 -72079884 - AluSx SINE Alu -12 300 1 379 294 35 35 chr3 155444730 155444873 -72079705 - MIR SINE MIR -52 210 68 241 253 58 11 chr3 155445218 155445305 -72079273 + LTR16B LTR ERVL 244 334 -130 2040 121 35 0 chr3 155445379 155445669 -72078909 - AluSx SINE Alu -12 300 1 214 353 88 0 chr3 155445955 155446057 -72078521 - L2 LINE L2 -23 3290 3180 868 214 40 0 chr3 155446641 155446814 -72077764 - AluJo SINE Alu 0 312 133 1822 185 3 0 chr3 155446887 155447179 -72077399 + AluJb SINE Alu 1 293 -19 356 246 119 17 chr3 155447192 155447310 -72077268 - AluJo SINE Alu -172 130 1 1513 230 43 50 chr3 155448125 155448310 -72076268 + MLT1C LTR MaLR 6 191 -276 2364 100 0 3 chr3 155448310 155448620 -72075958 + AluSc SINE Alu 1 309 0 1513 230 43 50 chr3 155448620 155448895 -72075683 + MLT1C LTR MaLR 191 463 -4 1869 161 7 10 chr3 155449610 155449914 -72074664 - AluJo SINE Alu -9 303 1 1146 168 5 29 chr3 155450021 155450074 -72074504 + AluJb SINE Alu 86 139 -173 1903 149 13 10 chr3 155450074 155450376 -72074202 + AluSx SINE Alu 1 303 -9 1146 168 5 29 chr3 155450376 155450531 -72074047 + AluJb SINE Alu 139 289 -23 2173 121 0 0 chr3 155450535 155450832 -72073746 + AluSx SINE Alu 1 297 -15 2502 66 0 10 chr3 155450836 155451141 -72073437 + AluY SINE Alu 1 302 -9 1646 224 37 19 chr3 155451141 155451551 -72073027 + L1ME1 LINE L1 5478 5894 -272 520 252 64 13 chr3 155451543 155451759 -72072819 + L1MB7 LINE L1 5939 6171 -8 * 2334 86 0 0 chr3 155451760 155452050 -72072528 - AluSg1 SINE Alu -19 290 1 2210 101 0 10 chr3 155452068 155452374 -72072204 - AluY SINE Alu -8 303 1 519 219 61 0 chr3 155452379 155452493 -72072085 + L1MC4 LINE L1 7552 7672 -370 216 158 0 0 chr3 155452504 155452542 -72072036 + (TA)n Simple_repeat Simple_repeat 2 39 0 1058 204 12 87 chr3 155452626 155452938 -72071640 + L1MC4 LINE L1 7725 8010 -32 2179 138 0 0 chr3 155452938 155453234 -72071344 - AluSx SINE Alu -14 298 3 1058 204 12 87 chr3 155453234 155453265 -72071313 + L1MC4 LINE L1 8010 8042 0 998 159 0 0 chr3 155453511 155453693 -72070885 - AluSg/x SINE Alu 0 315 134 2295 98 3 3 chr3 155453693 155453999 -72070579 - AluSx SINE Alu -6 306 1 242 325 75 48 chr3 155453999 155454334 -72070244 + L2 LINE L2 2130 2473 -841 395 232 74 32 chr3 155454426 155454452 -72070126 - L1ME4a LINE L1 -100 6021 5998 1154 187 32 61 chr3 155454452 155454540 -72070038 - MER8 DNA MER2_type 0 239 150 2428 80 0 0 chr3 155454540 155454841 -72069737 + AluY SINE Alu 1 301 -10 1154 187 32 61 chr3 155454841 155454998 -72069580 - MER8 DNA MER2_type -89 150 1 395 232 74 32 chr3 155454998 155455161 -72069417 - L1ME4a LINE L1 -123 5998 5824 1483 140 88 121 chr3 155455167 155455631 -72068947 - LTR7 LTR ERV1 -1 449 1 2606 139 9 9 chr3 155455631 155456062 -72068516 - HERVH LTR ERV1 0 7713 7283 7099 132 10 5 chr3 155456074 155457788 -72066790 - HERVH LTR ERV1 -1840 5251 3357 * 7392 186 18 50 chr3 155457781 155458328 -72066250 - HERVH LTR ERV1 -3576 3078 2515 2349 98 0 0 chr3 155458328 155458625 -72065953 + AluY SINE Alu 1 297 -14 7392 186 18 50 chr3 155458625 155460531 -72064047 - HERVH LTR ERV1 -4139 2515 801 1833 178 101 28 chr3 155460585 155461013 -72063565 - HERVH LTR ERV1 -7254 459 1 1364 167 121 74 chr3 155461013 155461443 -72063135 - LTR7 LTR ERV1 0 450 1 1016 150 64 0 chr3 155461443 155461616 -72062962 + MER5A DNA MER1_type 6 189 0 1902 102 56 7 chr3 155461629 155461913 -72062665 - AluSx SINE Alu -14 298 1 643 232 39 19 chr3 155461913 155462068 -72062510 - L1M4b LINE L1 -6691 168 11 1465 176 26 22 chr3 155463079 155463352 -72061226 + AluJo SINE Alu 3 276 -36 534 324 31 59 chr3 155463788 155464044 -72060534 + MIR SINE MIR 1 249 -13 2271 123 0 3 chr3 155464361 155464671 -72059907 - AluSx SINE Alu -3 309 1 584 197 150 27 chr3 155464677 155464824 -72059754 - AluJb SINE Alu -7 305 141 242 266 18 92 chr3 155465298 155465366 -72059212 - MIR SINE MIR -114 148 89 1470 145 74 0 chr3 155465366 155465608 -72058970 + AluJb SINE Alu 43 302 -10 242 266 18 92 chr3 155465608 155465648 -72058930 - MIR SINE MIR -173 89 48 906 179 20 56 chr3 155465702 155465728 -72058850 + MER5A DNA MER1_type 1 26 -163 2031 166 69 64 chr3 155465728 155466209 -72058369 - MER31A LTR ERV1 -2 483 1 906 179 20 56 chr3 155466209 155466378 -72058200 + MER5A DNA MER1_type 26 189 0 214 170 21 21 chr3 155466588 155466635 -72057943 - L2 LINE L2 -4 3309 3263 394 288 85 26 chr3 155467165 155467318 -72057260 + L2 LINE L2 3107 3268 -4 286 245 155 26 chr3 155467834 155467989 -72056589 + MIR SINE MIR 13 187 -21 626 204 126 52 chr3 155468000 155468160 -72056418 + MIR SINE MIR 6 190 -72 2129 108 0 11 chr3 155468160 155468470 -72056108 - AluSx SINE Alu 0 307 1 626 204 126 52 chr3 155468470 155468538 -72056040 + MIR SINE MIR 190 252 -10 252 288 0 0 chr3 155468781 155468847 -72055731 - LTR16B LTR ERVL -4 460 395 1989 138 20 0 chr3 155468847 155469145 -72055433 + AluSx SINE Alu 1 304 -8 2174 128 10 0 chr3 155469246 155469597 -72054981 + AluSx SINE Alu 3 356 0 1575 152 18 21 chr3 155470312 155470431 -72054147 + AluSx SINE Alu 14 132 -180 2141 92 26 13 chr3 155470431 155470736 -72053842 + AluSx SINE Alu 1 309 -3 1575 152 18 21 chr3 155470736 155470899 -72053679 + AluSx SINE Alu 132 295 -17 817 160 8 0 chr3 155471015 155471140 -72053438 - FLAM_C SINE Alu -16 127 2 2354 91 0 0 chr3 155471151 155471447 -72053131 - AluSg SINE Alu -14 296 1 1906 140 0 0 chr3 155471449 155471721 -72052857 - AluSx SINE Alu -18 294 23 1415 173 85 3 chr3 155471723 155472006 -72052572 - AluJo SINE Alu -6 306 1 1965 140 0 7 chr3 155472269 155472576 -72052002 - AluY SINE Alu -6 305 1 824 176 14 14 chr3 155472580 155472728 -72051850 - AluSg/x SINE Alu 0 312 165 527 121 61 10 chr3 155472862 155472961 -72051617 - L1M4 LINE L1 -861 5285 5182 2029 139 7 7 chr3 155472964 155473273 -72051305 - AluSx SINE Alu -1 311 3 2113 210 25 41 chr3 155473276 155473510 -72051068 - L1M4 LINE L1 -1505 4641 4405 2006 102 80 0 chr3 155473510 155473784 -72050794 + AluSx SINE Alu 1 296 -16 2113 210 25 41 chr3 155473784 155474115 -72050463 - L1M4 LINE L1 -1741 4405 4085 2332 114 3 0 chr3 155474115 155474422 -72050156 + AluSx SINE Alu 1 308 -4 1515 203 36 54 chr3 155474428 155474926 -72049652 + L1M4 LINE L1 2454 2942 -3204 320 330 20 0 chr3 155677364 155677464 -71847114 + MIR3 SINE MIR 86 187 -21 180 176 0 0 chr3 155677985 155678019 -71846559 + G-rich Low_complexity Low_complexity 1 34 0 182 298 97 24 chr3 155678434 155678558 -71846020 - L2 LINE L2 -69 3244 3112 2531 58 3 3 chr3 155679063 155679371 -71845207 + AluY SINE Alu 1 308 -3 381 181 53 43 chr3 155679501 155679595 -71844983 - L2 LINE L2 -49 3264 3170 404 308 237 34 chr3 155679595 155680245 -71844333 + L2 LINE L2 2063 2844 -470 4152 223 77 22 chr3 155681530 155682797 -71841781 + L1MC4a LINE L1 3608 4944 -1202 21 0 0 0 chr3 155685500 155685521 -71839057 + AT_rich Low_complexity Low_complexity 1 21 0 213 39 0 0 chr3 155685626 155685652 -71838926 + (CAAT)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr3 155685883 155685904 -71838674 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 155686830 155686856 -71837722 + AT_rich Low_complexity Low_complexity 1 26 0 32 26 0 0 chr3 155687007 155687046 -71837532 + AT_rich Low_complexity Low_complexity 1 39 0 243 61 0 0 chr3 155687052 155687085 -71837493 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 243 291 82 57 chr3 155687417 155687575 -71837003 - MIR SINE MIR -13 249 88 237 248 119 20 chr3 155688389 155688490 -71836088 + L1ME LINE L1 5706 5816 -305 2302 85 0 3 chr3 155689021 155689316 -71835262 - AluY SINE Alu -17 294 1 29 28 0 0 chr3 155689336 155689372 -71835206 + AT_rich Low_complexity Low_complexity 1 36 0 2076 110 25 38 chr3 155689427 155689744 -71834834 + AluSq SINE Alu 1 313 0 244 284 62 19 chr3 155691555 155691717 -71832861 + L1MC4a LINE L1 5107 5275 -871 1473 284 67 16 chr3 155691723 155692273 -71832305 + L1MC4a LINE L1 5291 5868 -1940 496 279 96 0 chr3 155692284 155692450 -71832128 + L1MC4a LINE L1 6618 6767 -1041 238 249 91 97 chr3 155692659 155692824 -71831754 + L1MC5 LINE L1 7049 7212 -749 219 36 0 0 chr3 155693508 155693536 -71831042 + (CA)n Simple_repeat Simple_repeat 1 28 0 2912 205 146 28 chr3 155693925 155694956 -71829622 + L1ME2 LINE L1 539 1661 -4879 1423 243 133 16 chr3 155694954 155695365 -71829213 + L1ME2 LINE L1 1895 2257 -4283 * 2157 137 0 0 chr3 155695365 155695672 -71828906 + AluSg SINE Alu 1 307 -3 1423 243 133 16 chr3 155695672 155696154 -71828424 + L1ME2 LINE L1 2257 2895 -3645 233 118 0 39 chr3 155696241 155696292 -71828286 + L1M LINE L1 5258 5306 -1053 2827 225 135 22 chr3 155696336 155697460 -71827118 + L1ME2 LINE L1 4414 5664 -876 1942 161 117 29 chr3 155697460 155697929 -71826649 - Tigger7 DNA MER2_type 0 2487 97 1261 149 49 152 chr3 155697929 155698258 -71826320 + AluJo SINE Alu 1 295 -17 360 220 0 55 chr3 155698328 155698419 -71826159 - Tigger7 DNA MER2_type -607 98 13 1485 219 131 24 chr3 155698502 155699005 -71825573 + L1ME2 LINE L1 5991 6547 -11 342 195 39 0 chr3 155699037 155699114 -71825464 + L1MC5 LINE L1 6971 7050 -911 569 225 7 26 chr3 155699155 155699306 -71825272 + L1MC5 LINE L1 7062 7209 -752 1861 96 0 4 chr3 155699419 155699670 -71824908 - AluSx SINE Alu -16 296 47 2104 121 7 3 chr3 155699858 155700155 -71824423 + AluSx SINE Alu 2 299 -13 1146 121 68 10 chr3 155700292 155700499 -71824079 - Tigger1 DNA MER2_type 0 2418 2200 582 148 129 0 chr3 155700495 155700596 -71823982 - Tigger1 DNA MER2_type -2279 139 26 * 1114 211 34 25 chr3 155701287 155701524 -71823054 + MER8 DNA MER2_type 1 239 0 190 286 107 36 chr3 155701823 155701935 -71822643 + MIR SINE MIR 119 238 -24 21 57 0 0 chr3 155703282 155703317 -71821261 + AT_rich Low_complexity Low_complexity 1 35 0 2145 114 3 3 chr3 155705294 155705591 -71818987 - AluSc SINE Alu -12 297 1 1062 87 40 0 chr3 155705848 155705997 -71818581 - AluY SINE Alu -8 303 149 1621 162 3 52 chr3 155706034 155706361 -71818217 + AluJb SINE Alu 1 311 -1 447 19 0 0 chr3 155707361 155707413 -71817165 + (TG)n Simple_repeat Simple_repeat 1 52 0 181 244 0 51 chr3 155707712 155707790 -71816788 + L2 LINE L2 2349 2422 -892 2310 101 0 0 chr3 155709076 155709373 -71815205 - AluSg SINE Alu -13 297 1 250 313 106 14 chr3 155709646 155709863 -71814715 + MARNA DNA Mariner 278 514 -72 642 207 184 37 chr3 155709925 155710142 -71814436 - MER112 DNA MER1_type -2 258 10 193 303 261 0 chr3 155711177 155711296 -71813282 + MIR SINE MIR 113 262 0 624 238 109 25 chr3 155711390 155711607 -71812971 - MIR SINE MIR -40 222 3 258 214 131 0 chr3 155711625 155711709 -71812869 + L1ME4a LINE L1 6021 6115 -6 1476 152 98 14 chr3 155711859 155711986 -71812592 + AluJb SINE Alu 1 116 -196 455 0 18 0 chr3 155711986 155712041 -71812537 + (TAAA)n Simple_repeat Simple_repeat 3 58 0 1476 152 98 14 chr3 155712041 155712190 -71812388 + AluJb SINE Alu 116 300 -12 22 35 0 0 chr3 155712217 155712246 -71812332 + AT_rich Low_complexity Low_complexity 1 29 0 2422 67 0 10 chr3 155712594 155712907 -71811671 - AluY SINE Alu -1 310 1 2481 68 3 3 chr3 155713428 155713739 -71810839 + AluY SINE Alu 1 311 0 206 289 169 0 chr3 155713925 155714008 -71810570 + MIR SINE MIR 43 139 -69 198 143 0 0 chr3 155714719 155714754 -71809824 + (CA)n Simple_repeat Simple_repeat 1 35 0 196 319 14 14 chr3 155714827 155714896 -71809682 + MER5A DNA MER1_type 56 124 -65 33 0 0 0 chr3 155714899 155714932 -71809646 + AT_rich Low_complexity Low_complexity 1 33 0 238 333 0 21 chr3 155715124 155715216 -71809362 + (TATATG)n Simple_repeat Simple_repeat 5 94 -51 184 29 0 57 chr3 155715216 155715251 -71809327 + (TTAAA)n Simple_repeat Simple_repeat 1 33 0 238 333 0 21 chr3 155715251 155715302 -71809276 + (TATATG)n Simple_repeat Simple_repeat 94 145 0 495 223 65 0 chr3 155715498 155715637 -71808941 + MER104 DNA Tc2 4 151 -29 245 244 222 0 chr3 155715845 155715935 -71808643 + MIR3 SINE MIR 98 207 -1 207 191 0 0 chr3 155717286 155717333 -71807245 + A-rich Low_complexity Low_complexity 1 47 0 388 177 82 33 chr3 155720463 155720592 -71803986 + MLT1J1 LTR MaLR 5 131 -319 2200 107 0 7 chr3 155721412 155721712 -71802866 - AluSc SINE Alu -11 298 1 1432 178 39 36 chr3 155724298 155724607 -71799971 + AluJb SINE Alu 3 312 0 246 318 28 0 chr3 155725549 155725656 -71798922 + L1ME LINE L1 5535 5644 -477 340 279 62 31 chr3 155726202 155726331 -71798247 + MIR3 SINE MIR 6 138 -70 262 311 130 55 chr3 155726388 155726626 -71797952 - MIR SINE MIR -6 256 1 798 246 4 94 chr3 155726910 155727186 -71797392 + MIR SINE MIR 12 262 0 195 261 211 101 chr3 155727118 155727336 -71797242 - MIR SINE MIR -10 252 11 * 1114 200 91 70 chr3 155727670 155727881 -71796697 + MER58B DNA MER1_type 4 226 -2194 2191 113 20 17 chr3 155727881 155728235 -71796343 + THE1A LTR MaLR 1 355 0 1114 200 91 70 chr3 155728235 155728353 -71796225 + MER58B DNA MER1_type 226 340 -1 331 258 43 0 chr3 155728480 155728573 -71796005 + GA-rich Low_complexity Low_complexity 3 99 0 493 118 20 0 chr3 155729131 155729220 -71795358 - L1MA4A LINE L1 -344 5958 5864 2164 96 0 25 chr3 155729967 155730281 -71794297 + AluY SINE Alu 1 306 -5 7223 214 73 22 chr3 155730418 155731290 -71793288 + L1M3 LINE L1 3026 3852 -2331 2044 132 0 7 chr3 155731290 155731594 -71792984 + AluSq SINE Alu 1 302 -11 7223 214 73 22 chr3 155731594 155732113 -71792465 + L1M3 LINE L1 3852 4343 -1840 2233 94 3 13 chr3 155732113 155732422 -71792156 + AluSc SINE Alu 1 306 -3 7223 214 73 22 chr3 155732422 155733513 -71791065 + L1M3 LINE L1 4343 5635 -548 5183 156 82 30 chr3 155733502 155734566 -71790012 + L1MC1 LINE L1 31 1149 -5277 * 1260 156 376 24 chr3 155734566 155735016 -71789562 + L1MC1 LINE L1 1416 2023 -4403 299 200 46 15 chr3 155735016 155735081 -71789497 - Tigger5 DNA MER2_type 0 2323 2257 5346 213 61 29 chr3 155735081 155735175 -71789403 + L1MC1 LINE L1 3229 3319 -3294 2428 66 0 3 chr3 155735175 155735480 -71789098 + AluY SINE Alu 1 304 -7 5346 213 61 29 chr3 155735480 155737549 -71787029 + L1MC1 LINE L1 3319 5320 -1293 1883 123 25 0 chr3 155737549 155737825 -71786753 + AluSx SINE Alu 1 283 -29 257 0 0 29 chr3 155737825 155737859 -71786719 + (CAGA)n Simple_repeat Simple_repeat 4 36 0 5346 213 61 29 chr3 155737859 155738886 -71785692 + L1MC1 LINE L1 5319 6600 -13 2467 195 52 6 chr3 155738897 155739436 -71785142 + L1MB2 LINE L1 5601 6164 -7 241 300 243 11 chr3 155740177 155740440 -71784138 + L2 LINE L2 1928 2251 -1063 244 307 183 29 chr3 155740973 155741110 -71783468 - L2 LINE L2 -560 2754 2597 475 273 131 39 chr3 155742818 155743078 -71781500 - L2 LINE L2 -103 3210 2927 1188 308 147 19 chr3 155743110 155743682 -71780896 - L2 LINE L2 -454 2860 2216 2113 111 7 0 chr3 155743859 155744147 -71780431 + AluSg SINE Alu 1 290 -20 1709 142 3 75 chr3 155744259 155744591 -71779987 + AluJo SINE Alu 1 308 -4 21 0 0 0 chr3 155744714 155744735 -71779843 + AT_rich Low_complexity Low_complexity 1 21 0 243 321 16 78 chr3 155745346 155745539 -71779039 + L2 LINE L2 228 408 -2906 196 325 26 26 chr3 155745751 155745865 -71778713 + L2 LINE L2 682 795 -2519 917 128 8 0 chr3 155745992 155746125 -71778453 + AluSg/x SINE Alu 169 302 -8 3234 164 59 112 chr3 155746135 155746703 -71777875 - L1MA8 LINE L1 -15 6276 5680 552 42 0 0 chr3 155746703 155746774 -71777804 + (TA)n Simple_repeat Simple_repeat 2 72 0 3234 164 59 112 chr3 155746774 155747506 -71777072 - L1MA8 LINE L1 -611 5680 4911 1638 175 3 35 chr3 155747506 155747820 -71776758 - AluJo SINE Alu -8 304 1 3234 164 59 112 chr3 155747820 155748183 -71776395 - L1MA8 LINE L1 -1380 4911 4531 1424 171 123 10 chr3 155748183 155748493 -71776085 + MER2 DNA MER2_type 1 345 0 3234 164 59 112 chr3 155748493 155749697 -71774881 - L1MA8 LINE L1 -1760 4531 3181 2129 227 87 49 chr3 155749677 155750873 -71773705 - L1M4 LINE L1 -4735 2302 1 * 3332 193 32 23 chr3 155751327 155752056 -71772522 + L1MB2 LINE L1 5430 6164 -7 282 235 78 29 chr3 155752088 155752190 -71772388 - MER103 DNA DNA -8 158 52 980 225 4 35 chr3 155753850 155754077 -71770501 + MER58A DNA MER1_type 4 223 -1 285 29 0 0 chr3 155754627 155754661 -71769917 + (CA)n Simple_repeat Simple_repeat 1 34 0 207 0 0 0 chr3 155754686 155754709 -71769869 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 183 80 0 0 chr3 155754785 155754810 -71769768 + (A)n Simple_repeat Simple_repeat 1 25 0 1635 179 62 0 chr3 155755891 155756164 -71768414 + AluJb SINE Alu 2 291 -21 287 293 40 30 chr3 155757468 155757567 -71767011 - MIR SINE MIR -78 130 31 2075 36 4 0 chr3 155757843 155758092 -71766486 + L1PA3 LINE L1 5905 6154 -1 736 261 80 0 chr3 155759040 155759239 -71765339 + MIR SINE MIR 29 243 -19 2115 115 0 0 chr3 155759244 155759531 -71765047 + AluSx SINE Alu 1 287 -25 210 143 0 0 chr3 155759531 155759566 -71765012 + (CAG)n Simple_repeat Simple_repeat 1 35 0 320 356 29 0 chr3 155760763 155760867 -71763711 - MER5A DNA MER1_type -3 186 80 21 0 0 0 chr3 155760874 155760895 -71763683 + AT_rich Low_complexity Low_complexity 1 21 0 241 343 150 23 chr3 155761665 155762152 -71762426 + L2 LINE L2 1869 2417 -897 230 258 183 75 chr3 155762251 155762437 -71762141 - L2 LINE L2 -2 3311 3106 194 333 18 18 chr3 155762948 155763005 -71761573 - MIR SINE MIR -183 79 23 195 42 0 0 chr3 155763783 155763807 -71760771 + (A)n Simple_repeat Simple_repeat 1 24 0 1337 215 117 54 chr3 155764036 155764556 -71760022 + L1ME3A LINE L1 5566 6118 -52 823 289 125 68 chr3 155764700 155765590 -71758988 + L1ME1 LINE L1 288 1227 -5336 412 265 64 57 chr3 155765591 155765855 -71758723 + L1ME1 LINE L1 1111 1376 -5008 1378 163 53 35 chr3 155765894 155766176 -71758402 - MER7A DNA MER2_type -61 285 1 788 260 156 22 chr3 155766227 155766638 -71757940 + L1ME2 LINE L1 5647 6112 -52 592 263 40 0 chr3 155766638 155766793 -71757785 + MLT1G1 LTR MaLR 1 86 -444 1155 160 19 10 chr3 155766793 155766999 -71757579 + MER2 DNA MER2_type 1 208 -137 636 208 16 0 chr3 155766999 155767124 -71757454 + MLT1G1 LTR MaLR 469 595 0 1921 253 78 31 chr3 155767364 155768416 -71756162 + L1ME1 LINE L1 1795 2845 -3537 4027 174 26 26 chr3 155768474 155768963 -71755615 + L1MB3 LINE L1 5374 5865 -318 2064 147 77 15 chr3 155768963 155769364 -71755214 + MSTB LTR MaLR 1 426 0 4027 174 26 26 chr3 155769364 155769684 -71754894 + L1MB3 LINE L1 5864 6183 0 2615 218 86 7 chr3 155769684 155770367 -71754211 + L1ME1 LINE L1 5661 6397 -5 410 260 138 66 chr3 155770528 155770630 -71753948 + L1MC/D LINE L1 4967 5060 -1086 1424 177 33 73 chr3 155770630 155770930 -71753648 + AluJo SINE Alu 1 288 -24 410 260 138 66 chr3 155770930 155771189 -71753389 + L1MC/D LINE L1 5060 5354 -792 300 319 56 38 chr3 155771239 155771399 -71753179 + L1MC/D LINE L1 5510 5672 -2136 1576 269 90 17 chr3 155771722 155772551 -71752027 + L2 LINE L2 2417 3309 -4 1668 191 70 20 chr3 155772649 155773105 -71751473 + L1MB7 LINE L1 4332 4810 -1336 1662 142 99 15 chr3 155773088 155773412 -71751166 + L1MB7 LINE L1 5833 6183 -1 * 661 137 73 16 chr3 155774763 155774887 -71749691 - AluJo SINE Alu -17 295 165 490 208 30 0 chr3 155774877 155774978 -71749600 - AluJo SINE Alu -165 147 44 * 200 259 93 0 chr3 155775246 155775300 -71749278 - L2 LINE L2 -219 3053 2995 1092 129 0 109 chr3 155775500 155775748 -71748830 + AluJo SINE Alu 82 302 -10 1213 201 50 27 chr3 155775779 155776162 -71748416 + L1MA4 LINE L1 5761 6163 -8 260 323 0 0 chr3 155776452 155776517 -71748061 + MIR3 SINE MIR 134 198 -10 535 272 132 14 chr3 155776594 155777043 -71747535 + L1ME3A LINE L1 5395 5902 -269 193 296 0 28 chr3 155777383 155777454 -71747124 - MIR3 SINE MIR -4 204 136 874 138 8 0 chr3 155777498 155777621 -71746957 + AluJb SINE Alu 1 124 -188 2067 144 0 0 chr3 155777659 155777957 -71746621 + AluSx SINE Alu 6 303 -9 371 56 56 0 chr3 155777959 155778030 -71746548 + (TA)n Simple_repeat Simple_repeat 2 76 0 304 154 45 91 chr3 155778032 155778142 -71746436 - L1MCa LINE L1 -4362 2064 1960 2198 96 14 0 chr3 155779082 155779386 -71745192 - AluSx SINE Alu 0 308 1 2060 96 31 17 chr3 155780937 155781229 -71743349 - AluSc SINE Alu -13 296 1 194 320 13 40 chr3 155781307 155781382 -71743196 - MIR SINE MIR -61 147 75 24 0 0 0 chr3 155781438 155781462 -71743116 + AT_rich Low_complexity Low_complexity 1 24 0 1342 172 76 46 chr3 155781537 155781839 -71742739 + AluJo SINE Alu 1 311 -1 616 200 125 8 chr3 155782041 155782161 -71742417 + AluJo SINE Alu 2 135 -177 348 310 110 4 chr3 155782458 155782591 -71741987 + MIR3 SINE MIR 24 166 -42 417 39 0 0 chr3 155782709 155782760 -71741818 + (CA)n Simple_repeat Simple_repeat 2 52 0 243 0 0 0 chr3 155782971 155782998 -71741580 + (CA)n Simple_repeat Simple_repeat 2 28 0 185 327 82 36 chr3 155783011 155783121 -71741457 + L2 LINE L2 3148 3262 -10 1793 183 69 23 chr3 155783163 155783512 -71741066 + MLT1A1 LTR MaLR 1 365 0 273 226 296 0 chr3 155783676 155783791 -71740787 - MIR SINE MIR -10 252 104 21 0 0 0 chr3 155785954 155785975 -71738603 + GC_rich Low_complexity Low_complexity 1 21 0 225 295 9 18 chr3 155786226 155786338 -71738240 + (CCG)n Simple_repeat Simple_repeat 1 111 0 22 0 0 0 chr3 155786792 155786814 -71737764 + GC_rich Low_complexity Low_complexity 1 22 0 339 25 0 0 chr3 155787583 155787623 -71736955 + (TG)n Simple_repeat Simple_repeat 2 41 0 794 108 54 47 chr3 155787795 155787924 -71736654 - FLAM_C SINE Alu -3 130 1 207 244 105 58 chr3 155789046 155789132 -71735446 - L2 LINE L2 -50 3222 3133 2504 77 0 0 chr3 155789219 155789530 -71735048 - AluY SINE Alu 0 311 1 219 154 103 0 chr3 155789872 155789911 -71734667 + MIR SINE MIR 213 255 -7 186 43 0 0 chr3 155789914 155789937 -71734641 + (TAG)n Simple_repeat Simple_repeat 1 23 0 508 335 152 19 chr3 155790124 155790704 -71733874 + L2 LINE L2 1712 2368 -946 417 235 10 10 chr3 155790717 155790819 -71733759 - L2 LINE L2 -898 2416 2315 625 299 175 24 chr3 155790819 155791089 -71733489 + MLT1J LTR MaLR 1 331 -180 1165 176 59 116 chr3 155791089 155791476 -71733102 + MLT1A1 LTR MaLR 1 365 0 625 299 175 24 chr3 155791476 155791536 -71733042 + MLT1J LTR MaLR 331 381 -130 257 207 35 0 chr3 155791640 155791698 -71732880 - L2 LINE L2 -995 2319 2260 392 242 215 27 chr3 155791897 155792046 -71732532 + MIR SINE MIR 72 248 -14 379 256 103 26 chr3 155792069 155792186 -71732392 + MIR SINE MIR 55 180 -82 1016 282 144 2 chr3 155792192 155792766 -71731812 - L2 LINE L2 0 3313 2666 206 299 75 0 chr3 155792756 155792790 -71731788 + MIR SINE MIR 179 249 -12 * 209 156 0 0 chr3 155792790 155792822 -71731756 + L2 LINE L2 3263 3294 -19 243 345 48 0 chr3 155792935 155793019 -71731559 + L2 LINE L2 3149 3236 -36 234 329 186 29 chr3 155793299 155793509 -71731069 + L2 LINE L2 3030 3272 0 185 250 17 33 chr3 155793785 155793845 -71730733 + MIR3 SINE MIR 135 193 -15 338 265 210 0 chr3 155794718 155794880 -71729698 - MIR SINE MIR -18 244 49 269 296 80 23 chr3 155795113 155795201 -71729377 + MIR SINE MIR 59 151 -111 1266 191 26 4 chr3 155795306 155795537 -71729041 - LTR16C LTR ERVL 0 491 256 300 263 40 10 chr3 155795569 155795668 -71728910 - LTR16C LTR ERVL -332 159 58 27 29 0 0 chr3 155796519 155796553 -71728025 + AT_rich Low_complexity Low_complexity 1 34 0 830 144 8 0 chr3 155796553 155796671 -71727907 - FLAM_C SINE Alu -24 119 1 343 307 92 23 chr3 155796751 155796969 -71727609 - L1MC4 LINE L1 -17 8025 7793 2097 201 35 128 chr3 155797143 155797215 -71727363 + MER77 LTR ERV1 1 78 -527 2569 66 0 0 chr3 155797215 155797520 -71727058 + AluY SINE Alu 1 305 -6 2097 201 35 128 chr3 155797520 155798112 -71726466 + MER77 LTR ERV1 78 603 -2 1316 267 59 23 chr3 155798588 155799298 -71725280 + ERVL LTR ERVL 1703 2503 -3021 1131 308 25 12 chr3 155799307 155799794 -71724784 + L1MEc LINE L1 1325 1817 -4579 1971 281 40 32 chr3 155799806 155801047 -71723531 + L1MEc LINE L1 1874 3087 -3128 574 240 0 71 chr3 155801078 155801107 -71723471 - MER58B DNA MER1_type -2079 341 312 3591 118 56 0 chr3 155801107 155801606 -71722972 + MER1A DNA MER1_type 1 527 0 574 240 0 71 chr3 155801606 155801773 -71722805 - MER58B DNA MER1_type -2108 312 162 766 120 9 9 chr3 155802078 155802186 -71722392 - FLAM_A SINE Alu -25 117 10 401 331 39 0 chr3 155802192 155802319 -71722259 + L2 LINE L2 3182 3313 0 968 237 66 4 chr3 155802813 155803070 -71721508 - L1ME3A LINE L1 -208 5962 5690 1006 89 73 52 chr3 155803252 155803443 -71721135 - MSTB2 LTR MaLR 0 457 263 450 308 13 25 chr3 155803773 155803932 -71720646 - MER5A DNA MER1_type -29 160 4 459 326 108 25 chr3 155804485 155805003 -71719575 + HAL1 LINE L1 1109 1669 -838 470 276 8 8 chr3 155805391 155805518 -71719060 - LTR16A1 LTR ERVL -12 445 319 28 105 0 0 chr3 155806448 155806553 -71718025 + AT_rich Low_complexity Low_complexity 1 105 0 435 314 54 5 chr3 155806648 155806852 -71717726 + L1MEc LINE L1 3742 3955 -2260 1014 163 0 0 chr3 155806852 155806999 -71717579 + FRAM SINE Alu 1 146 -30 22 0 0 0 chr3 155806999 155807021 -71717557 + AT_rich Low_complexity Low_complexity 1 22 0 8181 19 7 0 chr3 155807021 155808395 -71716183 - L1PA3 LINE L1 -3 6152 4782 797 287 138 70 chr3 155808415 155808742 -71715836 + L1MEc LINE L1 3934 4237 -1978 7780 132 25 15 chr3 155808742 155809959 -71714619 + Tigger3b DNA MER2_type 2 1231 0 797 287 138 70 chr3 155809959 155810130 -71714448 + L1MEc LINE L1 4237 4395 -1820 249 191 48 0 chr3 155810130 155810193 -71714385 + MLT1I LTR MaLR 324 389 -20 797 287 138 70 chr3 155810193 155810911 -71713667 + L1MEc LINE L1 4395 5300 -915 939 336 39 9 chr3 155811115 155811448 -71713130 + LTR16C LTR ERVL 148 490 -1 189 214 0 0 chr3 155811782 155811824 -71712754 + GA-rich Low_complexity Low_complexity 4 45 0 446 236 0 11 chr3 155812282 155812371 -71712207 + MLT1J LTR MaLR 107 194 -317 602 239 96 25 chr3 155813053 155813254 -71711324 - MIR SINE MIR -24 238 19 198 368 107 60 chr3 155814433 155814667 -71709911 - L2 LINE L2 -27 3245 3001 2220 99 0 7 chr3 155816013 155816315 -71708263 + AluSc SINE Alu 1 300 -9 2319 82 0 7 chr3 155817560 155817853 -71706725 - AluY SINE Alu -20 291 1 26 30 0 0 chr3 155818779 155818812 -71705766 + AT_rich Low_complexity Low_complexity 1 33 0 429 313 63 71 chr3 155818923 155819290 -71705288 - L2 LINE L2 0 3272 2909 2438 121 33 36 chr3 155819863 155820228 -71704350 + THE1B LTR MaLR 1 364 0 192 311 142 28 chr3 155820234 155820340 -71704238 - L2 LINE L2 -16 3256 3139 413 225 19 56 chr3 155822277 155822437 -71702141 - L1M4 LINE L1 -3428 2718 2565 637 270 19 13 chr3 155822533 155822692 -71701886 + MER5B DNA MER1_type 19 178 0 1014 192 40 5 chr3 155822780 155822978 -71701600 + MER3 DNA MER1_type 1 205 -4 2188 110 19 10 chr3 155823321 155823629 -71700949 + AluSq SINE Alu 1 311 -2 2253 114 0 0 chr3 155824012 155824311 -71700267 - AluSq SINE Alu -14 299 1 273 333 97 0 chr3 155826008 155826101 -71698477 + L2 LINE L2 3144 3245 -27 195 274 0 59 chr3 155827425 155827476 -71697102 - L2 LINE L2 -19 3253 3206 192 354 97 5 chr3 155827574 155827769 -71696809 - L2 LINE L2 -924 2390 2178 2661 30 0 3 chr3 155829739 155830039 -71694539 - L1PA7 LINE L1 -7 6147 5849 2933 57 32 14 chr3 155830039 155830092 -71694486 + L1P3 LINE L1 4963 5014 -1158 2374 101 3 0 chr3 155830092 155830399 -71694179 + AluSp SINE Alu 1 308 -5 2933 57 32 14 chr3 155830399 155830867 -71693711 + L1P3 LINE L1 5014 5492 -680 2590 176 39 60 chr3 155830868 155830934 -71693644 - L1MD2 LINE L1 0 6359 6293 1802 156 10 35 chr3 155830934 155831248 -71693330 + AluJo SINE Alu 1 306 -6 2590 176 39 60 chr3 155831248 155831800 -71692778 - L1MD2 LINE L1 -66 6293 5754 598 133 62 108 chr3 155831813 155832002 -71692576 - L1MDb LINE L1 -3949 2695 2499 185 0 40 0 chr3 155832002 155832027 -71692551 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2349 47 4 4 chr3 155832031 155832309 -71692269 - AluY SINE Alu -33 278 1 598 133 62 108 chr3 155832309 155832354 -71692224 - L1MDb LINE L1 -4148 2496 2467 747 188 0 31 chr3 155832354 155832482 -71692096 - FLAM_C SINE Alu -8 125 2 380 198 37 0 chr3 155832497 155832578 -71692000 - L1MDb LINE L1 -4371 2273 2190 798 146 146 46 chr3 155832578 155832729 -71691849 - FRAM SINE Alu -11 165 1 3575 195 78 40 chr3 155832730 155834078 -71690500 - L1MDb LINE L1 -4450 2194 762 752 298 40 58 chr3 155834230 155834559 -71690019 + MLT1I LTR MaLR 78 400 -9 833 256 5 9 chr3 155835706 155835921 -71688657 - L1MDb LINE L1 -6289 253 40 230 321 24 0 chr3 155836005 155836089 -71688489 - L2 LINE L2 -5 3308 3223 2072 132 0 3 chr3 155836448 155836735 -71687843 + AluSx SINE Alu 1 286 -26 2288 245 155 15 chr3 155836764 155837372 -71687206 + L1MB7 LINE L1 1061 1583 -4799 1996 129 27 14 chr3 155837372 155837667 -71686911 + AluSx SINE Alu 1 299 -13 2288 245 155 15 chr3 155837667 155838635 -71685943 + L1MB7 LINE L1 1583 2882 -3500 7211 218 48 30 chr3 155838645 155838763 -71685815 + L1MB7 LINE L1 3466 3581 -2839 2238 102 3 0 chr3 155838763 155839069 -71685509 + AluSp SINE Alu 1 307 0 7211 218 48 30 chr3 155839069 155841520 -71683058 + L1MB7 LINE L1 3581 6075 -345 3224 219 18 3 chr3 155842871 155843533 -71681045 + L1MC1 LINE L1 1 672 -5754 * 9111 194 40 7 chr3 155843529 155846684 -71677894 + L1MC1 LINE L1 3345 6609 -4 250 235 69 78 chr3 155846889 155846991 -71677587 - L2 LINE L2 -2 3270 3170 2664 145 31 17 chr3 155847010 155847430 -71677148 + MSTB LTR MaLR 1 426 0 484 200 0 0 chr3 155847652 155847737 -71676841 + MER45A DNA AcHobo 80 164 -14 1740 173 0 17 chr3 155848052 155848347 -71676231 - AluJo SINE Alu -22 290 1 2157 210 94 10 chr3 155848407 155848926 -71675652 - MER119 DNA MER1_type 0 583 21 198 321 8 82 chr3 155850125 155850259 -71674319 + MIR3 SINE MIR 64 187 -21 315 0 0 0 chr3 155850678 155850713 -71673865 + (CA)n Simple_repeat Simple_repeat 2 36 0 4445 136 8 42 chr3 155850763 155851475 -71673103 - LTR12 LTR ERV1 0 688 1 1782 207 14 11 chr3 155852355 155852718 -71671860 - MLT1A1 LTR MaLR 0 365 2 295 283 51 22 chr3 155854039 155854230 -71670348 - MIR SINE MIR -11 251 25 274 241 44 73 chr3 155854612 155854749 -71669829 - L2 LINE L2 0 3272 3140 190 229 114 99 chr3 155855098 155855229 -71669349 + MIR SINE MIR 12 144 -118 251 308 48 10 chr3 155857921 155858025 -71666553 + MIR SINE MIR 66 173 -89 219 69 0 0 chr3 155858525 155858554 -71666024 + (TA)n Simple_repeat Simple_repeat 2 30 0 1326 240 99 54 chr3 155859136 155859386 -71665192 + MLT1D LTR MaLR 1 238 -267 2359 100 40 54 chr3 155859386 155859756 -71664822 + MLT1A1 LTR MaLR 1 365 0 1326 240 99 54 chr3 155859756 155859988 -71664590 + MLT1D LTR MaLR 238 505 0 21 36 0 0 chr3 155860123 155860151 -71664427 + AT_rich Low_complexity Low_complexity 1 28 0 390 281 125 35 chr3 155860254 155860510 -71664068 - L1MC4a LINE L1 -1818 5990 5712 271 258 11 56 chr3 155860799 155860888 -71663690 - MIR SINE MIR -163 99 15 790 246 97 67 chr3 155860902 155861441 -71663137 - MLT1G1 LTR MaLR -3 552 16 195 42 0 0 chr3 155861688 155861712 -71662866 + (TG)n Simple_repeat Simple_repeat 2 25 0 1086 184 30 0 chr3 155863080 155863281 -71661297 + L1 LINE L1 5146 5352 -794 525 195 85 105 chr3 155863723 155864065 -71660513 + MER31B LTR ERV1 4 482 -3 2345 71 3 0 chr3 155865323 155865630 -71658948 - AluSp SINE Alu 0 308 1 3234 220 51 18 chr3 155865767 155866853 -71657725 + L1MD1 LINE L1 4924 6041 -201 245 143 48 0 chr3 155866853 155866895 -71657683 + MER3 DNA MER1_type 13 56 -153 236 209 0 0 chr3 155866895 155866938 -71657640 + L1MD1 LINE L1 6084 6126 -116 * 727 222 66 6 chr3 155866933 155867100 -71657478 - L1M3 LINE L1 -587 5596 5420 670 148 7 37 chr3 155867082 155867217 -71657361 + L1MD1 LINE L1 6111 6241 -1 * 215 235 20 0 chr3 155867349 155867400 -71657178 + MIR SINE MIR 104 155 -107 994 234 181 25 chr3 155867400 155867848 -71656730 - LTR40a LTR ERVL 0 519 2 212 228 35 0 chr3 155867912 155867969 -71656609 + MIR SINE MIR 198 256 -6 1974 108 4 0 chr3 155870044 155870302 -71654276 + AluSq SINE Alu 1 259 -54 372 43 0 0 chr3 155870328 155870374 -71654204 + (GGAA)n Simple_repeat Simple_repeat 4 49 0 1533 169 45 15 chr3 155870380 155870855 -71653723 + L1M3 LINE L1 99 558 -5624 3044 110 7 14 chr3 155870855 155871298 -71653280 + L1PB2 LINE L1 5703 6143 -8 1533 169 45 15 chr3 155871298 155871326 -71653252 + L1M3 LINE L1 558 5520 -662 1112 190 15 128 chr3 155871365 155871765 -71652813 + L1MC4 LINE L1 7026 7380 -662 298 263 11 11 chr3 155871766 155871861 -71652717 + L1MC4a LINE L1 7505 7599 -209 2376 256 36 42 chr3 155871881 155872094 -71652484 + L1ME1 LINE L1 5374 5587 -579 1460 136 9 0 chr3 155872094 155872307 -71652271 + L1MC1 LINE L1 6109 6323 -10 2376 256 36 42 chr3 155872307 155872783 -71651795 + L1ME1 LINE L1 5587 6060 -106 1965 101 80 14 chr3 155872783 155873069 -71651509 + AluSx SINE Alu 4 308 -4 2376 256 36 42 chr3 155873069 155873158 -71651420 + L1ME1 LINE L1 6060 6148 -18 211 315 0 14 chr3 155873450 155873523 -71651055 - MIR3 SINE MIR -7 201 130 229 234 13 65 chr3 155873644 155873721 -71650857 + L2 LINE L2 3233 3305 -8 2069 226 109 12 chr3 155874450 155875048 -71649530 - MER69B DNA AcHobo -3 1223 568 312 230 19 0 chr3 155875661 155875822 -71648756 + (TGG)n Simple_repeat Simple_repeat 2 165 0 280 274 26 0 chr3 155875826 155875939 -71648639 + G-rich Low_complexity Low_complexity 5 120 0 269 239 25 0 chr3 155875943 155876102 -71648476 + (TGG)n Simple_repeat Simple_repeat 3 165 0 182 226 16 16 chr3 155876118 155876242 -71648336 + (TGG)n Simple_repeat Simple_repeat 3 126 0 233 234 19 13 chr3 155876333 155876487 -71648091 + (TGG)n Simple_repeat Simple_repeat 2 156 0 198 234 23 0 chr3 155876508 155876636 -71647942 + (TGG)n Simple_repeat Simple_repeat 2 132 0 235 365 39 17 chr3 155876896 155877077 -71647501 + HAL1 LINE L1 1283 1467 -1040 5774 100 22 1 chr3 155877867 155878685 -71645893 - L1PB4 LINE L1 0 6156 5322 1343 147 5 0 chr3 155878685 155878883 -71645695 - AluJo SINE Alu -10 302 104 2236 155 38 40 chr3 155881497 155881614 -71642964 - LTR56 LTR ERV1 0 445 329 1821 147 11 4 chr3 155881614 155881915 -71642663 - AluJo SINE Alu 0 303 1 1473 206 43 13 chr3 155881917 155882098 -71642480 - AluJb SINE Alu -2 310 115 450 0 0 0 chr3 155882098 155882148 -71642430 + (TTTA)n Simple_repeat Simple_repeat 3 52 0 1473 206 43 13 chr3 155882148 155882267 -71642311 - AluJb SINE Alu -197 115 1 2236 155 38 40 chr3 155882267 155882591 -71641987 - LTR56 LTR ERV1 -117 328 1 1574 231 17 74 chr3 155882807 155883334 -71641244 - MLT2B3 LTR ERVL -12 503 10 3076 179 39 73 chr3 155883761 155884509 -71640069 - MER72 LTR ERV1 0 722 1 209 111 0 0 chr3 155884588 155884615 -71639963 - L2 LINE L2 -36 3236 3210 2775 138 7 11 chr3 155885097 155885540 -71639038 + MER34C LTR ERV1 36 476 -109 770 217 7 0 chr3 155885570 155885713 -71638865 + Tigger3(Golem) DNA MER2_type 2885 3028 -1 351 151 139 12 chr3 155885720 155885806 -71638772 + MER34C LTR ERV1 488 584 -1 1672 164 67 71 chr3 155885807 155886228 -71638350 - MLT1D LTR MaLR -18 487 69 2479 121 62 17 chr3 155886249 155886669 -71637909 - LTR56 LTR ERV1 0 445 7 322 278 33 22 chr3 155886652 155886742 -71637836 - MLT1D LTR MaLR -413 92 2 * 780 244 194 19 chr3 155886747 155887062 -71637516 - L1ME3A LINE L1 -192 5978 5609 347 200 106 24 chr3 155887072 155887157 -71637421 - MER94 DNA DNA -4 130 39 840 93 9 0 chr3 155887235 155887342 -71637236 + AluSq/x SINE Alu 1 108 -205 2016 128 7 23 chr3 155887345 155887649 -71636929 + AluSx SINE Alu 1 299 -13 1676 278 75 40 chr3 155887680 155888584 -71635994 - L1ME3A LINE L1 -654 5516 4583 2536 107 42 62 chr3 155888589 155888701 -71635877 - LTR35 LTR ERV1 0 618 505 414 0 0 0 chr3 155888701 155888747 -71635831 + (GA)n Simple_repeat Simple_repeat 2 47 0 2536 107 42 62 chr3 155888747 155889189 -71635389 - LTR35 LTR ERV1 -113 505 1 528 322 0 0 chr3 155889564 155889710 -71634868 - MIR SINE MIR -115 147 2 2302 84 16 0 chr3 155890343 155890651 -71633927 + AluSq SINE Alu 1 313 0 248 298 0 29 chr3 155891957 155892061 -71632517 + T-rich Low_complexity Low_complexity 2 102 0 199 167 0 0 chr3 155892269 155892305 -71632273 - L2 LINE L2 0 3313 3278 876 150 0 0 chr3 155892618 155892751 -71631827 + FLAM_C SINE Alu 1 133 0 2076 96 7 0 chr3 155893898 155894206 -71630372 + AluSx SINE Alu 11 320 0 204 228 35 0 chr3 155894457 155894514 -71630064 - MIR SINE MIR -41 221 163 466 212 146 15 chr3 155894516 155894533 -71630045 - L1MA10 LINE L1 0 6334 6318 2914 239 56 28 chr3 155894533 155894764 -71629814 - L1ME2 LINE L1 -9 6549 6326 2273 111 0 0 chr3 155894764 155895070 -71629508 - AluSx SINE Alu -6 306 1 2914 239 56 28 chr3 155895070 155895649 -71628929 - L1ME2 LINE L1 -232 6326 5685 1854 147 0 41 chr3 155895649 155895941 -71628637 - AluSx SINE Alu -32 280 1 2914 239 56 28 chr3 155895941 155896189 -71628389 - L1ME2 LINE L1 -873 5685 5445 846 124 0 0 chr3 155896193 155896306 -71628272 + AluJb SINE Alu 5 117 -195 566 202 64 49 chr3 155896320 155896523 -71628055 - L1ME2 LINE L1 -1082 5458 5253 2869 254 93 28 chr3 155896609 155897480 -71627098 + L1MD2 LINE L1 176 1103 -5437 * 3131 199 100 22 chr3 155897476 155898416 -71626162 + L1MD2 LINE L1 1367 2379 -4161 2870 257 62 13 chr3 155898433 155899376 -71625202 + L1MD2 LINE L1 3965 4953 -1587 907 194 0 0 chr3 155899377 155899542 -71625036 + FRAM SINE Alu 1 165 -11 3243 173 86 52 chr3 155899542 155899791 -71624787 + L1MD2 LINE L1 5757 5996 -640 2065 129 24 0 chr3 155899791 155900078 -71624500 + AluSx SINE Alu 1 294 -18 3243 173 86 52 chr3 155900078 155900720 -71623858 + L1MD2 LINE L1 5996 6621 -15 305 177 234 32 chr3 155900713 155900837 -71623741 - L1ME2 LINE L1 -1283 5257 5109 * 246 333 31 23 chr3 155900848 155900977 -71623601 - MIR SINE MIR -114 148 19 349 240 0 58 chr3 155901047 155901151 -71623427 + MER5A DNA MER1_type 9 106 -83 2540 43 7 0 chr3 155901187 155901488 -71623090 + AluY SINE Alu 1 303 -8 664 214 130 0 chr3 155901831 155902023 -71622555 - L1ME2 LINE L1 -4708 1832 1616 323 157 34 112 chr3 155902025 155902114 -71622464 + MLT1D LTR MaLR 3 84 -421 807 139 95 0 chr3 155902137 155902274 -71622304 + AluJb SINE Alu 141 290 -22 1165 226 116 58 chr3 155902284 155902682 -71621896 + MLT1D LTR MaLR 85 505 0 1853 193 69 41 chr3 155902687 155902801 -71621777 - L1ME2 LINE L1 -4925 1615 1506 1979 142 3 10 chr3 155902801 155903112 -71621466 - AluSx SINE Alu -3 309 1 1853 193 69 41 chr3 155903112 155903605 -71620973 - L1ME2 LINE L1 -5034 1506 991 552 322 125 34 chr3 155903815 155904262 -71620316 - L1ME2 LINE L1 -5843 697 210 332 299 43 34 chr3 155904628 155904745 -71619833 + MIR SINE MIR 39 156 -106 306 213 80 27 chr3 155907284 155907359 -71617219 - L2 LINE L2 -8 3264 3186 22 0 0 0 chr3 155908819 155908841 -71615737 + AT_rich Low_complexity Low_complexity 1 22 0 1837 166 78 0 chr3 155908928 155909247 -71615331 - MER2 DNA MER2_type 0 344 1 2154 117 0 17 chr3 155909444 155909742 -71614836 + AluSg SINE Alu 1 293 -17 327 179 0 0 chr3 155909816 155909883 -71614695 + GA-rich Low_complexity Low_complexity 2 68 0 709 266 110 84 chr3 155910073 155910432 -71614146 + L1MC4a LINE L1 5427 5804 -2004 2143 113 3 0 chr3 155910432 155910723 -71613855 - AluSx SINE Alu -20 292 1 709 266 110 84 chr3 155910723 155910864 -71613714 + L1MC4a LINE L1 5804 5940 -1868 2052 137 46 58 chr3 155910927 155911322 -71613256 - MLT1B LTR MaLR 0 390 1 289 357 35 42 chr3 155912430 155912573 -71612005 - L2 LINE L2 -5 3267 3126 231 237 40 53 chr3 155913661 155913737 -71610841 + L2 LINE L2 3222 3296 -17 2309 204 28 76 chr3 155914084 155914448 -71610130 + LTR9 LTR ERV1 1 322 -290 4625 97 4 106 chr3 155914448 155915214 -71609364 - LTR12 LTR ERV1 0 688 1 2309 204 28 76 chr3 155915214 155915492 -71609086 + LTR9 LTR ERV1 322 612 0 405 0 0 0 chr3 155915525 155915570 -71609008 + (TG)n Simple_repeat Simple_repeat 2 46 0 638 209 12 61 chr3 155915756 155915919 -71608659 - MER31B LTR ERV1 -60 406 252 350 134 317 0 chr3 155915918 155916000 -71608578 - MER31B LTR ERV1 -358 108 1 * 2205 207 179 24 chr3 155917568 155918249 -71606329 + LTR48 LTR ERV1 1 787 0 273 280 80 0 chr3 155918326 155918401 -71606177 + MLT1I LTR MaLR 132 212 -197 2002 150 105 18 chr3 155919139 155919538 -71605040 + L1MA7 LINE L1 5849 6282 -9 1524 173 17 53 chr3 155919617 155919917 -71604661 + AluJo SINE Alu 1 289 -23 1466 265 102 18 chr3 155919917 155920483 -71604095 - L1M4 LINE L1 -1072 5143 4530 1976 196 25 15 chr3 155920485 155920888 -71603690 - MLT2D LTR ERVL -2 412 6 5823 155 58 12 chr3 155920891 155921115 -71603463 - ERVL-D LTR ERVL -5 5759 5547 2422 147 3 0 chr3 155921115 155921461 -71603117 + MER7A DNA MER2_type 1 345 -1 5823 155 58 12 chr3 155921461 155922272 -71602306 - ERVL-D LTR ERVL -217 5547 4676 2755 133 0 17 chr3 155922270 155922692 -71601886 - ERVL-D LTR ERVL -1243 4521 4107 * 894 269 66 34 chr3 155922696 155923292 -71601286 - L1MCa LINE L1 -3556 2659 2039 425 292 25 15 chr3 155923395 155923597 -71600981 - L1MCa LINE L1 -4329 2067 1864 3697 183 64 25 chr3 155924163 155925044 -71599534 - Charlie1a DNA MER1_type 0 1455 541 678 257 87 75 chr3 155925044 155925581 -71598997 - LTR48 LTR ERV1 0 787 1 2324 210 59 28 chr3 155925582 155926110 -71598468 - Charlie1a DNA MER1_type -911 544 1 1854 180 19 83 chr3 155926703 155927126 -71597452 + MSTD LTR MaLR 1 396 0 198 0 0 0 chr3 155927384 155927406 -71597172 + (CA)n Simple_repeat Simple_repeat 1 22 0 1391 175 109 0 chr3 155927437 155927721 -71596857 - MLT2C2 LTR ERVL -83 381 1 286 333 65 8 chr3 155928167 155928290 -71596288 + MIR SINE MIR 2 131 -131 1739 238 45 58 chr3 155928316 155928382 -71596196 + L1MDa LINE L1 2 67 -6473 2297 119 0 0 chr3 155928382 155928692 -71595886 - AluSx SINE Alu -2 310 1 1739 238 45 58 chr3 155928692 155929176 -71595402 + L1MDa LINE L1 67 545 -5995 3537 239 60 28 chr3 155929621 155930762 -71593816 + L1M4 LINE L1 3237 4413 -1733 * 3730 240 101 48 chr3 155930744 155930834 -71593744 + L1MD2 LINE L1 37 121 -5924 2112 101 6 19 chr3 155930834 155931116 -71593462 + AluSp SINE Alu 1 280 -33 185 0 0 39 chr3 155931116 155931142 -71593436 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2112 101 6 19 chr3 155931142 155931176 -71593402 + AluSp SINE Alu 280 313 0 3730 240 101 48 chr3 155931176 155932034 -71592544 + L1MD2 LINE L1 121 960 -5085 1760 162 61 14 chr3 155932034 155932379 -71592199 - MER46B DNA MER2_type 0 236 1 3730 240 101 48 chr3 155932379 155932565 -71592013 + L1MD2 LINE L1 960 1135 -4910 6113 103 9 0 chr3 155932694 155933654 -71590924 - L1PA13 LINE L1 -4 6159 5185 4580 171 10 0 chr3 155933657 155934476 -71590102 - L1PA13 LINE L1 -1131 5015 4189 1919 190 109 4 chr3 155934475 155934933 -71589645 + L1MD2 LINE L1 1125 1630 -4934 * 3677 229 78 44 chr3 155934937 155936818 -71587760 + L1MD2 LINE L1 4819 6765 -12 1868 124 7 36 chr3 155936820 155937127 -71587451 + AluSg SINE Alu 1 298 -12 235 286 0 0 chr3 155937306 155937362 -71587216 - MLT1L LTR MaLR -4 611 556 232 231 187 11 chr3 155937382 155937473 -71587105 + LTR33 LTR ERVL 2 108 -413 280 245 75 0 chr3 155937862 155937956 -71586622 - MLT1L LTR MaLR -76 539 439 1829 209 23 16 chr3 155938850 155939237 -71585341 + MLT2D LTR ERVL 23 412 -2 334 309 64 25 chr3 155939239 155939475 -71585103 + L1M4 LINE L1 4461 4705 -1441 620 282 96 25 chr3 155939482 155939805 -71584773 + L1M4 LINE L1 4729 5074 -1072 331 280 7 0 chr3 155939807 155939898 -71584680 - FRAM SINE Alu -31 135 56 2364 199 82 21 chr3 155940000 155940352 -71584226 + ERVL-D LTR ERVL 5148 5550 -214 2007 184 3 0 chr3 155940352 155940695 -71583883 - MER7A DNA MER2_type -4 342 1 2364 199 82 21 chr3 155940695 155940919 -71583659 + ERVL-D LTR ERVL 5550 5759 -5 537 264 21 0 chr3 155940922 155941062 -71583516 + MLT2D LTR ERVL 6 148 -266 1691 132 0 7 chr3 155942414 155942686 -71581892 - HERVK9 LTR ERVK -4022 1894 1625 2625 212 32 43 chr3 155942686 155943477 -71581101 - HERVK9 LTR ERVK -5254 662 104 417 329 40 18 chr3 155944072 155944294 -71580284 + MIR SINE MIR 11 237 -25 376 293 138 0 chr3 155944785 155944973 -71579605 + LTR16C LTR ERVL 240 453 -38 345 287 85 37 chr3 155946413 155946577 -71578001 + MIR SINE MIR 35 206 -56 214 322 0 11 chr3 155946666 155946756 -71577822 + (CATG)n Simple_repeat Simple_repeat 3 91 0 * 258 259 12 12 chr3 155946718 155946803 -71577775 + (TCCA)n Simple_repeat Simple_repeat 4 88 0 223 278 44 56 chr3 155947633 155947723 -71576855 + L2 LINE L2 3181 3269 -3 1083 149 5 45 chr3 155947737 155947890 -71576688 + Tigger2 DNA MER2_type 6 151 -2567 1375 194 9 69 chr3 155947890 155948209 -71576369 + AluJb SINE Alu 1 300 -2 1083 149 5 45 chr3 155948209 155948256 -71576322 + Tigger2 DNA MER2_type 151 198 -2520 759 100 123 29 chr3 155948388 155948558 -71576020 - MER53 DNA DNA 0 189 4 403 223 54 54 chr3 155948570 155948682 -71575896 - Charlie4 DNA MER1_type -1812 149 38 333 314 107 8 chr3 155949004 155949125 -71575453 + L2 LINE L2 3176 3308 -5 1330 128 0 0 chr3 155949263 155949466 -71575112 + AluSg SINE Alu 2 204 -106 3430 196 39 11 chr3 155949567 155950267 -71574311 - ERVL LTR ERVL -371 5393 4675 1310 260 0 21 chr3 155950264 155950602 -71573976 - ERVL LTR ERVL -1243 4521 4191 * 6140 158 1 5 chr3 155951997 155953005 -71571573 + HERVK9 LTR ERVK 1883 2886 -3030 2330 188 42 12 chr3 155953105 155953601 -71570977 - MER6A DNA MER2_type -93 512 2 388 310 0 3 chr3 155953606 155953936 -71570642 + (CA)n Simple_repeat Simple_repeat 1 328 0 1521 262 74 28 chr3 155954517 155955055 -71569523 - MER45B DNA AcHobo -477 563 1 279 148 33 0 chr3 155955816 155955877 -71568701 - L1M4 LINE L1 -2845 3301 3239 1174 292 56 27 chr3 155956324 155956807 -71567771 - L1MDa LINE L1 -5995 545 49 1006 144 0 0 chr3 155956808 155956961 -71567617 + AluSx SINE Alu 1 153 -159 992 225 43 52 chr3 155957673 155958002 -71566576 - MER1B DNA MER1_type -13 326 1 498 17 0 0 chr3 155958024 155958083 -71566495 + (TA)n Simple_repeat Simple_repeat 2 60 0 789 276 138 8 chr3 155958505 155958875 -71565703 + L1MCa LINE L1 1070 1487 -4939 737 270 72 94 chr3 155958884 155959662 -71564916 + L1M4 LINE L1 4401 5161 -985 1465 206 19 83 chr3 155959977 155960400 -71564178 - MSTD LTR MaLR 0 396 1 1151 246 63 71 chr3 155960999 155961508 -71563070 + Charlie1a DNA MER1_type 5 509 -946 2343 152 9 14 chr3 155961628 155962048 -71562530 - L1MB3 LINE L1 -178 6005 5588 212 175 25 0 chr3 155962686 155962726 -71561852 + GA-rich Low_complexity Low_complexity 5 45 0 588 329 62 50 chr3 155964797 155965584 -71558994 - L1M4 LINE L1 -1319 4827 4022 1259 232 31 7 chr3 155965584 155965877 -71558701 - AluJo SINE Alu -2 300 1 588 329 62 50 chr3 155965877 155966154 -71558424 - L1M4 LINE L1 -2124 4022 3750 429 54 0 0 chr3 155966170 155966226 -71558352 + (TG)n Simple_repeat Simple_repeat 2 57 0 271 268 72 36 chr3 155967888 155968026 -71556552 + MER67A LTR ERV1 401 543 0 1294 206 27 10 chr3 155968854 155969155 -71555423 - AluJo SINE Alu -1 311 6 9203 172 14 1 chr3 155970194 155971801 -71552777 - HERVK9 LTR ERVK -955 4961 3335 188 208 0 104 chr3 155972569 155972617 -71551961 - L3 LINE CR1 -507 1070 1028 393 183 0 14 chr3 155973001 155973072 -71551506 + AluJ/FLAM SINE Alu 1 70 -232 497 194 0 0 chr3 155973172 155973275 -71551303 + L1MA7 LINE L1 6187 6289 -2 272 302 9 35 chr3 155974039 155974155 -71550423 + MIR SINE MIR 33 145 -117 517 274 61 61 chr3 155975645 155975857 -71548721 - L2 LINE L2 -24 3289 3078 234 331 16 39 chr3 155976722 155976849 -71547729 - L2 LINE L2 -465 2849 2726 596 267 17 6 chr3 155976852 155977024 -71547554 + L1M3b LINE L1 1 174 -6107 435 241 0 23 chr3 155977053 155977096 -71547482 + L1M3b LINE L1 1547 1589 -4692 2074 135 0 0 chr3 155977096 155977399 -71547179 + AluSx SINE Alu 1 303 -9 435 241 0 23 chr3 155977399 155977488 -71547090 + L1M3b LINE L1 1589 1676 -4605 1919 40 0 28 chr3 155977588 155977836 -71546742 + L1PA4 LINE L1 5915 6155 0 738 228 6 6 chr3 155977875 155978033 -71546545 + FRAM SINE Alu 1 158 -8 1336 239 82 57 chr3 155978037 155978564 -71546014 + MLT1F LTR MaLR 1 540 -2 1864 110 59 3 chr3 155980379 155980669 -71543909 + AluSx SINE Alu 3 308 -4 1640 167 114 28 chr3 155980827 155980965 -71543613 + MER2 DNA MER2_type 2 127 -218 2204 125 9 29 chr3 155980965 155981309 -71543269 - MER1B DNA MER1_type 0 337 1 1640 167 114 28 chr3 155981309 155981487 -71543091 + MER2 DNA MER2_type 127 345 0 229 197 141 0 chr3 155981822 155981893 -71542685 + MER103 DNA DNA 61 141 -25 10304 159 50 51 chr3 155982466 155984688 -71539890 + HERVK9 LTR ERVK 3680 5900 -16 1927 204 84 13 chr3 155984732 155985194 -71539384 + MER9 LTR ERVK 17 511 0 1795 193 69 41 chr3 155985872 155986365 -71538213 + L1MDb LINE L1 991 1506 -5034 1875 142 3 10 chr3 155986365 155986676 -71537902 + AluSx SINE Alu 1 309 -3 1795 193 69 41 chr3 155986676 155986790 -71537788 + L1MDb LINE L1 1506 1615 -4925 1187 226 116 58 chr3 155986795 155987193 -71537385 - MLT1D LTR MaLR 0 505 85 759 139 95 0 chr3 155987203 155987340 -71537238 - AluJb SINE Alu -22 290 141 240 246 33 0 chr3 155987357 155987418 -71537160 - MLT1D LTR MaLR -416 89 27 624 219 130 0 chr3 155987454 155987646 -71536932 + L1MDb LINE L1 1616 1832 -4708 1643 162 7 0 chr3 155987998 155988307 -71536271 - AluY SINE Alu 0 311 1 1834 122 4 14 chr3 155989802 155990080 -71534498 + AluSx SINE Alu 34 308 -4 1906 169 107 58 chr3 155990248 155990734 -71533844 + LTR54 LTR ERV1 1 510 0 376 167 0 0 chr3 155990823 155990886 -71533692 + Alu SINE Alu 1 53 -255 454 189 0 11 chr3 155990888 155990978 -71533600 + AluJo/FRAM SINE Alu 160 248 -64 24 0 0 0 chr3 155990978 155991002 -71533576 + AT_rich Low_complexity Low_complexity 1 24 0 1768 124 7 2 chr3 155991172 155991709 -71532869 - L1PA13 LINE L1 0 6163 5393 234 0 0 0 chr3 155991854 155991880 -71532698 + (TCCC)n Simple_repeat Simple_repeat 2 27 0 785 236 6 6 chr3 155991880 155992045 -71532533 - AluJo SINE Alu -13 299 135 522 210 32 17 chr3 155992045 155992214 -71532364 - MER4D LTR ERV1 -529 343 62 * 1237 174 91 62 chr3 155992208 155992483 -71532095 - MER49 LTR ERV1 -640 283 1 470 177 42 10 chr3 155992566 155992662 -71531916 + MER72 LTR ERV1 1 99 -623 263 93 23 0 chr3 155992671 155992714 -71531864 + (TTCC)n Simple_repeat Simple_repeat 2 45 0 1694 121 39 4 chr3 155992714 155992971 -71531607 - AluSx SINE Alu -44 268 3 2429 153 55 9 chr3 155992972 155993411 -71531167 + MER72 LTR ERV1 264 722 0 209 297 89 40 chr3 155993495 155993596 -71530982 - L2 LINE L2 -8 3264 3159 1586 221 0 3 chr3 155994180 155994478 -71530100 + MLT2B1 LTR ERVL 7 303 -217 4805 129 4 9 chr3 155994481 155995216 -71529362 + LTR17 LTR ERV1 1 731 -49 244 220 33 33 chr3 155995638 155995729 -71528849 + (TA)n Simple_repeat Simple_repeat 1 91 0 2089 105 10 0 chr3 155995753 155996049 -71528529 - AluSp SINE Alu -14 299 1 24 0 0 0 chr3 155996098 155996122 -71528456 + AT_rich Low_complexity Low_complexity 1 24 0 647 232 58 78 chr3 155996132 155996425 -71528153 + L1ME2 LINE L1 5734 6020 -144 234 118 0 0 chr3 155996425 155996459 -71528119 + MER3 DNA MER1_type 16 49 -160 392 148 30 89 chr3 155996465 155996566 -71528012 + L1ME3 LINE L1 6061 6155 -7 382 202 9 9 chr3 155997226 155997335 -71527243 + CT-rich Low_complexity Low_complexity 1 109 0 2803 165 34 41 chr3 155997386 155997989 -71526589 - MER4D LTR ERV1 0 903 51 645 219 0 7 chr3 155998009 155998146 -71526432 - AluJo SINE Alu -175 137 2 255 204 0 0 chr3 155998169 155998223 -71526355 + CT-rich Low_complexity Low_complexity 2 55 0 999 227 36 0 chr3 155998228 155998475 -71526103 - AluSx SINE Alu -53 259 4 381 244 104 0 chr3 155998478 155998613 -71525965 + MER72 LTR ERV1 268 416 -306 1133 183 23 0 chr3 155998713 155998932 -71525646 + L1MB3 LINE L1 5911 6134 -49 1951 140 7 3 chr3 155999452 155999759 -71524819 - AluSx SINE Alu -4 308 1 205 336 60 8 chr3 155999859 155999993 -71524585 + MIR SINE MIR 1 141 -121 292 260 71 39 chr3 156000462 156000616 -71523962 - MER67A LTR ERV1 0 543 385 4709 213 51 48 chr3 156001797 156002572 -71522006 + L1MB1 LINE L1 2030 2801 -3603 2089 118 9 15 chr3 156002572 156002903 -71521675 - L1MA1 LINE L1 0 6302 5974 4709 213 51 48 chr3 156002903 156005512 -71519066 + L1MB1 LINE L1 2801 6129 -275 297 111 56 0 chr3 156005513 156005567 -71519011 + L1MA10 LINE L1 6278 6334 0 2269 186 16 99 chr3 156005985 156006285 -71518293 + MLT2B1 LTR ERVL 7 248 -272 5256 105 33 8 chr3 156006285 156007046 -71517532 + LTR17 LTR ERV1 1 780 0 2269 186 16 99 chr3 156007046 156007262 -71517316 + MLT2B1 LTR ERVL 248 480 -40 1041 249 126 6 chr3 156007342 156007668 -71516910 - MLT1I LTR MaLR -4 405 41 184 298 18 18 chr3 156008473 156008530 -71516048 - L2 LINE L2 -1407 1907 1851 2106 87 37 0 chr3 156008604 156008903 -71515675 + AluSg SINE Alu 1 310 0 300 226 16 0 chr3 156009409 156009471 -71515107 + HAL1 LINE L1 2 64 -2443 329 226 85 0 chr3 156009980 156010086 -71514492 + HAL1 LINE L1 797 911 -1596 716 163 0 43 chr3 156010183 156010324 -71514254 + FLAM_C SINE Alu 2 136 -7 1214 237 99 63 chr3 156010327 156010915 -71513663 + HAL1 LINE L1 1043 1667 -840 1246 233 106 32 chr3 156010915 156011349 -71513229 + MER31B LTR ERV1 1 466 0 1214 237 99 63 chr3 156011349 156011537 -71513041 + HAL1 LINE L1 1667 1847 -660 280 234 13 39 chr3 156011602 156011679 -71512899 + MER63 DNA MER1_type 31 731 -105 239 309 12 12 chr3 156011678 156011762 -71512816 + MER63 DNA MER1_type 972 1055 -5 * 241 252 130 80 chr3 156011777 156012039 -71512539 + HAL1 LINE L1 1930 2204 -303 270 181 38 76 chr3 156012451 156012556 -71512022 - L1MB2 LINE L1 -1 6170 6070 444 261 35 109 chr3 156012707 156012767 -71511811 - L1M4 LINE L1 -2085 4061 3998 1621 175 31 3 chr3 156012767 156013059 -71511519 - AluJb SINE Alu -12 300 1 444 261 35 109 chr3 156013059 156013346 -71511232 - L1M4 LINE L1 -2148 3998 3740 435 52 0 0 chr3 156013350 156013408 -71511170 + (TG)n Simple_repeat Simple_repeat 2 59 0 303 241 12 24 chr3 156013553 156013636 -71510942 - L1M4 LINE L1 -2615 3531 3450 2269 190 56 86 chr3 156013638 156014500 -71510078 - L1MC5 LINE L1 -582 7379 6546 2232 183 38 31 chr3 156014790 156015239 -71509339 - MSTB2 LTR MaLR 0 457 6 1864 199 107 7 chr3 156015244 156015657 -71508921 - MER82 DNA MER2_type -1 652 199 962 209 25 0 chr3 156016209 156016405 -71508173 - MER82 DNA MER2_type -449 204 4 475 29 44 0 chr3 156016420 156016488 -71508090 + (TCTA)n Simple_repeat Simple_repeat 1 71 0 1946 134 36 39 chr3 156016508 156016843 -71507735 + MER1B DNA MER1_type 1 334 -3 747 125 108 0 chr3 156017893 156018013 -71506565 - FLAM_C SINE Alu 0 133 1 203 125 25 0 chr3 156019219 156019259 -71505319 + CT-rich Low_complexity Low_complexity 5 45 0 3024 128 81 16 chr3 156019896 156020453 -71504125 + L1MB3 LINE L1 5588 6180 -3 889 158 0 0 chr3 156020778 156020911 -71503667 - FLAM_C SINE Alu 0 133 1 246 360 0 9 chr3 156021360 156021474 -71503104 + L1MC5 LINE L1 7314 7426 -535 490 261 81 77 chr3 156021514 156021807 -71502771 + L1MC4 LINE L1 7610 7908 -134 2027 125 0 0 chr3 156021807 156022108 -71502470 + AluSx SINE Alu 1 301 0 490 261 81 77 chr3 156022108 156022243 -71502335 + L1MC4 LINE L1 7908 8041 -1 1633 157 0 30 chr3 156022632 156022931 -71501647 + AluJo SINE Alu 22 311 -1 428 179 75 57 chr3 156022937 156023043 -71501535 + FLAM_C SINE Alu 2 109 -34 349 241 158 30 chr3 156023185 156023318 -71501260 + MER31A LTR ERV1 336 485 0 426 231 81 48 chr3 156023320 156023506 -71501072 + HAL1 LINE L1 1656 1847 -660 334 224 13 26 chr3 156023571 156023647 -71500931 + MER63 DNA MER1_type 31 731 -331 297 301 12 0 chr3 156023646 156023729 -71500849 + MER63 DNA MER1_type 974 1057 -5 * 346 229 244 65 chr3 156023744 156024145 -71500433 + HAL1 LINE L1 1930 2402 -105 222 184 0 0 chr3 156024376 156024414 -71500164 + CT-rich Low_complexity Low_complexity 2 39 0 3761 147 26 70 chr3 156024415 156025190 -71499388 - L1MB3 LINE L1 0 6183 5443 1937 150 20 0 chr3 156025773 156026079 -71498499 - AluSq SINE Alu -1 312 1 1012 156 112 5 chr3 156026085 156026290 -71498288 - L1MA5 LINE L1 -230 6070 5844 414 241 0 60 chr3 156026685 156026801 -71497777 - L2 LINE L2 0 3313 3205 191 299 43 0 chr3 156027088 156027205 -71497373 - L2 LINE L2 -732 2582 2461 2212 82 0 3 chr3 156028028 156028310 -71496268 - AluSg SINE Alu -29 281 1 397 302 103 8 chr3 156028442 156028568 -71496010 - L2 LINE L2 0 3313 3176 1363 233 70 43 chr3 156028890 156029014 -71495564 + Charlie4a DNA MER1_type 38 157 -1804 794 94 123 29 chr3 156029014 156029184 -71495394 + MER53 DNA DNA 4 189 0 1363 233 70 43 chr3 156029184 156029502 -71495076 + Charlie4a DNA MER1_type 157 492 -16 200 184 20 0 chr3 156030071 156030120 -71494458 + CT-rich Low_complexity Low_complexity 1 50 0 188 208 21 21 chr3 156030414 156030462 -71494116 + L2 LINE L2 3225 3272 0 490 335 50 5 chr3 156030684 156030905 -71493673 + MIR SINE MIR 7 237 -25 378 0 0 0 chr3 156031280 156031322 -71493256 + (TG)n Simple_repeat Simple_repeat 2 43 0 1246 147 0 78 chr3 156032315 156032681 -71491897 + AluSg/x SINE Alu 83 429 0 1163 185 29 0 chr3 156033967 156034172 -71490406 + MLT1A1 LTR MaLR 155 365 0 216 226 0 0 chr3 156034216 156034278 -71490300 + (TG)n Simple_repeat Simple_repeat 1 62 0 1541 75 0 5 chr3 156034306 156034507 -71490071 - AluSq SINE Alu -26 287 88 4616 162 16 42 chr3 156034693 156035351 -71489227 + L1MB2 LINE L1 5291 5920 -251 928 125 0 0 chr3 156035351 156035479 -71489099 + FLAM_C SINE Alu 1 128 -5 4616 162 16 42 chr3 156035479 156035720 -71488858 + L1MB2 LINE L1 5920 6166 -5 263 253 51 25 chr3 156036061 156036140 -71488438 - MER5B DNA MER1_type -97 81 1 1486 106 0 5 chr3 156036263 156036480 -71488098 + AluSq SINE Alu 88 303 -10 198 71 0 0 chr3 156036750 156036778 -71487800 + (TTG)n Simple_repeat Simple_repeat 1 28 0 197 163 25 25 chr3 156037307 156037387 -71487191 + (TGGA)n Simple_repeat Simple_repeat 1 80 0 347 291 85 36 chr3 156037527 156037692 -71486886 - MIR SINE MIR -55 207 35 1624 185 28 69 chr3 156038825 156039215 -71485363 - MLT1A2 LTR MaLR 0 374 1 1589 162 152 52 chr3 156039238 156039435 -71485143 + MLT2B1 LTR ERVL 2 178 -342 564 42 0 0 chr3 156039435 156039506 -71485072 + (TCTCC)n Simple_repeat Simple_repeat 5 75 0 1589 162 152 52 chr3 156039506 156039739 -71484839 + MLT2B1 LTR ERVL 178 520 0 294 323 140 12 chr3 156039754 156040044 -71484534 + L1ME3 LINE L1 5621 5951 -211 1680 147 10 3 chr3 156040377 156040670 -71483908 - AluSp SINE Alu -18 295 1 22 0 0 0 chr3 156040721 156040743 -71483835 + AT_rich Low_complexity Low_complexity 1 22 0 1009 227 55 85 chr3 156040750 156041186 -71483392 + L1ME2 LINE L1 5731 6153 -11 11531 176 14 10 chr3 156041872 156044058 -71480520 - L1P LINE L1 -1096 5050 2856 756 288 96 9 chr3 156045019 156045363 -71479215 + LTR16A LTR ERVL 60 433 -17 250 194 28 0 chr3 156045674 156045746 -71478832 + (TATATG)n Simple_repeat Simple_repeat 5 78 0 267 190 0 0 chr3 156045830 156045888 -71478690 + (TG)n Simple_repeat Simple_repeat 2 59 0 264 327 59 83 chr3 156046591 156046998 -71477580 - L2 LINE L2 -49 3223 2827 2083 105 3 0 chr3 156047086 156047380 -71477198 - AluSx SINE Alu -17 295 1 1120 131 50 54 chr3 156047420 156047586 -71476992 - L1MA3 LINE L1 -1 6304 6138 2303 77 0 0 chr3 156047586 156047886 -71476692 - AluY SINE Alu -11 300 1 1120 131 50 54 chr3 156047886 156047941 -71476637 - L1MA3 LINE L1 -167 6138 6084 1386 249 115 38 chr3 156048173 156048642 -71475936 + L1ME1 LINE L1 5432 5936 -230 395 179 0 0 chr3 156048696 156048774 -71475804 + L1MA10 LINE L1 6243 6320 -14 1369 131 146 15 chr3 156048851 156049118 -71475460 - AluSx SINE Alu -10 302 1 1502 190 27 64 chr3 156049260 156049665 -71474913 - MLT1B LTR MaLR 0 390 1 814 148 23 8 chr3 156049710 156049838 -71474740 + AluJo SINE Alu 6 135 -177 2024 206 84 13 chr3 156050237 156050714 -71473864 + MER9 LTR ERVK 1 511 0 3295 186 44 47 chr3 156050719 156051610 -71472968 + HERVK14 LTR ERVK 9 874 -5071 14179 114 11 5 chr3 156051610 156053642 -71470936 + HERVK14 LTR ERVK 1625 3668 -2248 451 256 11 0 chr3 156053743 156053833 -71470745 - MER2 DNA MER2_type -253 92 2 305 215 25 51 chr3 156054169 156054248 -71470330 + U6 snRNA snRNA 9 85 -22 629 280 44 0 chr3 156054814 156054996 -71469582 - MER63A DNA MER1_type 0 210 21 353 319 9 0 chr3 156055321 156055434 -71469144 - L1ME LINE L1 -468 5653 5540 356 266 60 70 chr3 156055668 156055717 -71468861 + L1ME4a LINE L1 5629 5677 -444 1934 127 28 3 chr3 156055717 156056008 -71468570 + AluSx SINE Alu 1 298 -14 356 266 60 70 chr3 156056008 156056259 -71468319 + L1ME4a LINE L1 5677 5926 -195 21 57 0 0 chr3 156056285 156056320 -71468258 + AT_rich Low_complexity Low_complexity 1 35 0 1994 143 0 3 chr3 156056588 156056889 -71467689 - AluSx SINE Alu -12 300 1 2353 217 77 74 chr3 156058490 156059332 -71465246 + MER45B DNA AcHobo 1 845 -195 456 275 135 0 chr3 156059336 156059529 -71465049 + LTR16C LTR ERVL 241 459 -32 1752 213 84 55 chr3 156061675 156062200 -71462378 - MLT1F LTR MaLR -2 540 1 937 196 0 0 chr3 156062204 156062362 -71462216 - FRAM SINE Alu -8 158 1 6760 27 0 0 chr3 156062409 156063184 -71461394 - L1PA4 LINE L1 -2 6153 5379 269 247 0 12 chr3 156063345 156063426 -71461152 + (CA)n Simple_repeat Simple_repeat 1 80 0 3067 160 62 0 chr3 156063426 156063995 -71460583 - MER6A DNA MER2_type 0 605 2 496 282 0 3 chr3 156064000 156064330 -71460248 + (CA)n Simple_repeat Simple_repeat 1 328 0 187 329 80 51 chr3 156065260 156065397 -71459181 - L2 LINE L2 -5 3267 3127 2147 105 0 0 chr3 156065544 156065850 -71458728 + AluSx SINE Alu 1 306 -6 3204 202 28 8 chr3 156065876 156066545 -71458033 + L1MB3 LINE L1 5450 6132 -51 22 0 0 0 chr3 156068870 156068892 -71455686 + AT_rich Low_complexity Low_complexity 1 22 0 3419 208 23 23 chr3 156068893 156069167 -71455411 - L1MB3 LINE L1 -9 6174 5901 2276 84 3 0 chr3 156069167 156069465 -71455113 - AluSq SINE Alu -14 299 1 3419 208 23 23 chr3 156069465 156069974 -71454604 - L1MB3 LINE L1 -281 5902 5391 1537 175 0 4 chr3 156072889 156073169 -71451409 + AluJb SINE Alu 1 279 -33 255 204 0 0 chr3 156073170 156073224 -71451354 + G-rich Low_complexity Low_complexity 5 58 0 590 258 154 10 chr3 156073741 156074039 -71450539 - L1M4 LINE L1 -3558 2588 2248 281 316 44 0 chr3 156074185 156074299 -71450279 - L2 LINE L2 0 3272 3154 35 41 0 0 chr3 156076503 156076552 -71448026 + AT_rich Low_complexity Low_complexity 1 49 0 1925 150 126 67 chr3 156078352 156078772 -71445806 + MER65A LTR ERV1 1 445 0 2356 76 0 3 chr3 156078999 156079303 -71445275 + AluY SINE Alu 1 303 -8 200 277 0 0 chr3 156080876 156080923 -71443655 + CT-rich Low_complexity Low_complexity 4 50 0 310 373 25 6 chr3 156081541 156081699 -71442879 + MIR SINE MIR 66 226 -36 221 253 53 27 chr3 156081784 156081859 -71442719 - MIR SINE MIR -113 149 73 297 324 18 9 chr3 156081949 156082060 -71442518 + MIR SINE MIR 33 144 -64 212 308 69 94 chr3 156082718 156082777 -71441801 - MIR SINE MIR -39 169 110 1908 146 27 0 chr3 156082777 156083071 -71441507 + AluJo SINE Alu 1 302 -10 212 308 69 94 chr3 156083071 156083170 -71441408 - MIR SINE MIR -98 110 15 1376 134 0 36 chr3 156083507 156083731 -71440847 + AluJo SINE Alu 84 299 -13 218 239 152 11 chr3 156086066 156086158 -71438420 - L2 LINE L2 0 3272 3168 889 195 30 0 chr3 156087181 156087350 -71437228 - Tigger2 DNA MER2_type -11 2707 2534 257 170 0 0 chr3 156087337 156087390 -71437188 - Tigger2 DNA MER2_type -2520 198 146 * 27 0 0 0 chr3 156087394 156087421 -71437157 + AT_rich Low_complexity Low_complexity 1 27 0 1694 184 14 0 chr3 156087423 156087701 -71436877 - AluJb SINE Alu -30 282 1 1059 97 7 0 chr3 156087705 156087859 -71436719 - Tigger2 DNA MER2_type -2563 155 1 255 329 12 24 chr3 156087868 156087953 -71436625 - L2 LINE L2 -3 3310 3227 189 356 55 14 chr3 156089403 156089549 -71435029 - L3 LINE CR1 -820 757 606 1416 142 0 40 chr3 156089950 156090175 -71434403 - AluJb SINE Alu -5 307 92 2009 149 3 10 chr3 156090181 156090483 -71434095 - AluJb SINE Alu -12 300 1 2493 51 0 17 chr3 156092504 156092798 -71431780 + AluY SINE Alu 1 289 -22 846 255 72 20 chr3 156094431 156094828 -71429750 + L1ME1 LINE L1 845 1228 -5178 240 309 32 0 chr3 156094845 156094939 -71429639 + MLT1F1 LTR MaLR 35 131 -436 2528 184 35 6 chr3 156094961 156095476 -71429102 + L1MC3 LINE L1 7256 7785 0 256 241 0 0 chr3 156095469 156095527 -71429051 + L1ME1 LINE L1 1213 1270 -5139 * 1859 113 11 3 chr3 156095527 156095810 -71428768 + Tigger2 DNA MER2_type 2434 2718 0 323 182 0 0 chr3 156095876 156095931 -71428647 + Tigger5 DNA MER2_type 1 55 -2268 552 165 0 0 chr3 156095935 156096026 -71428552 + Tigger5 DNA MER2_type 2231 2321 -2 2397 249 74 33 chr3 156096026 156096748 -71427830 + L1ME1 LINE L1 4669 5360 -1066 1756 198 3 0 chr3 156096748 156097056 -71427522 + AluJb SINE Alu 1 309 -3 2397 249 74 33 chr3 156097056 156098022 -71426556 + L1ME1 LINE L1 5360 6426 0 1409 238 10 44 chr3 156100070 156100237 -71424341 + MLT1A2 LTR MaLR 1 172 -202 2273 108 10 0 chr3 156100237 156100534 -71424044 + AluSx SINE Alu 1 300 -12 1409 238 10 44 chr3 156100534 156100753 -71423825 + MLT1A2 LTR MaLR 172 374 0 381 288 50 7 chr3 156100809 156100948 -71423630 - L1ME3A LINE L1 -13 6157 6013 1756 173 26 10 chr3 156102320 156102627 -71421951 + AluJo SINE Alu 1 312 0 502 219 79 0 chr3 156102831 156102945 -71421633 + MER63 DNA MER1_type 12 760 -76 236 254 15 0 chr3 156102985 156103052 -71421526 + MER63 DNA MER1_type 995 1062 0 303 341 92 18 chr3 156103194 156103423 -71421155 + L3 LINE CR1 784 1029 -548 331 310 51 25 chr3 156103759 156103917 -71420661 + L3 LINE CR1 1213 1374 -203 916 130 8 0 chr3 156105651 156105782 -71418796 - AluJb SINE Alu -180 132 1 405 116 36 107 chr3 156105987 156106099 -71418479 + MER53 DNA DNA 84 187 -2 517 234 108 28 chr3 156106208 156106422 -71418156 + MER106A DNA MER1_type 3 233 -3 399 165 117 10 chr3 156108782 156108885 -71415693 - MIR SINE MIR -97 165 52 247 93 0 56 chr3 156112246 156112300 -71412278 + L1PA3 LINE L1 6105 6155 0 363 44 0 0 chr3 156112764 156112809 -71411769 + (CA)n Simple_repeat Simple_repeat 2 46 0 303 304 78 0 chr3 156115105 156115207 -71409371 - L1ME3A LINE L1 -2020 5788 5679 287 286 0 29 chr3 156117112 156117217 -71407361 - MIR SINE MIR -128 134 33 1240 190 8 0 chr3 156117980 156118238 -71406340 - L1MA7 LINE L1 -2 6289 6030 215 138 46 15 chr3 156118363 156118428 -71406150 + GA-rich Low_complexity Low_complexity 1 67 0 378 0 0 0 chr3 156119350 156119392 -71405186 + (TG)n Simple_repeat Simple_repeat 2 43 0 655 226 5 81 chr3 156120762 156120873 -71403705 + L1MD3 LINE L1 7731 7818 -177 2329 117 7 0 chr3 156120873 156121182 -71403396 + AluSx SINE Alu 1 311 -1 655 226 5 81 chr3 156121182 156121291 -71403287 + L1MD3 LINE L1 7818 7934 -61 628 225 0 14 chr3 156121433 156121575 -71403003 - MER2 DNA MER2_type -204 141 2 1910 131 58 0 chr3 156121733 156122024 -71402554 - AluSx SINE Alu -4 308 1 777 185 26 53 chr3 156222283 156222472 -71302106 + AluSg/x SINE Alu 129 312 0 434 294 29 3 chr3 156222679 156222864 -71301714 - MIR SINE MIR -24 238 5 321 231 17 5 chr3 156226102 156226223 -71298355 + MER5A DNA MER1_type 7 189 0 22 35 0 0 chr3 156227033 156227062 -71297516 + AT_rich Low_complexity Low_complexity 1 29 0 38545 66 3 5 chr3 156228501 156234314 -71290264 - L1PA5 LINE L1 -7 6147 344 6272 206 76 40 chr3 156234320 156234598 -71289980 + L1MA4A LINE L1 1639 1905 -4943 1425 195 79 4 chr3 156234598 156234865 -71289713 + AluSx SINE Alu 1 287 -25 230 49 0 49 chr3 156234869 156234910 -71289668 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 6272 206 76 40 chr3 156234910 156236350 -71288228 + L1MA4A LINE L1 1907 3293 -3555 370 122 0 0 chr3 156236350 156236399 -71288179 - 5S rRNA rRNA -72 49 1 6272 206 76 40 chr3 156236399 156236717 -71287861 + L1MA4A LINE L1 3293 3598 -3250 7116 22 3 6 chr3 156236717 156236754 -71287824 + L1PA2 LINE L1 5300 5336 -819 2006 114 7 4 chr3 156236754 156237035 -71287543 + AluSq SINE Alu 1 282 -31 7116 22 3 6 chr3 156237035 156237855 -71286723 + L1PA2 LINE L1 5336 6155 0 6272 206 76 40 chr3 156237855 156239247 -71285331 + L1MA4A LINE L1 3598 5257 -1591 2175 185 32 10 chr3 156239318 156239723 -71284855 - MSTB LTR MaLR -12 414 1 5882 148 28 32 chr3 156239723 156241312 -71283266 + L1MA4A LINE L1 5254 6835 -170 2017 145 0 0 chr3 156241312 156241622 -71282956 + AluSx SINE Alu 1 310 0 5882 148 28 32 chr3 156241622 156241793 -71282785 + L1MA4A LINE L1 6835 7005 0 966 189 64 75 chr3 156242359 156242394 -71282184 + MIR SINE MIR 1 35 -227 1798 114 4 11 chr3 156242394 156242658 -71281920 + AluSx SINE Alu 45 306 -6 966 189 64 75 chr3 156242658 156242887 -71281691 + MIR SINE MIR 35 262 0 824 268 90 48 chr3 156243103 156243422 -71281156 + Charlie7 DNA MER1_type 29 333 -2279 2142 131 16 0 chr3 156243422 156243727 -71280851 - AluSx SINE Alu -2 310 1 824 268 90 48 chr3 156243727 156244038 -71280540 + Charlie7 DNA MER1_type 333 686 -1926 2008 147 0 10 chr3 156244345 156244651 -71279927 - AluSx SINE Alu -9 303 1 2247 94 3 0 chr3 156244785 156245071 -71279507 + AluY SINE Alu 1 287 -24 2026 186 28 39 chr3 156245094 156245234 -71279344 + L1MC3 LINE L1 5395 5535 -2250 2416 68 0 37 chr3 156245234 156245555 -71279023 - AluY SINE Alu -2 309 1 2026 186 28 39 chr3 156245555 156245881 -71278697 + L1MC3 LINE L1 5535 5856 -1929 804 184 80 25 chr3 156245882 156246045 -71278533 - AluJo SINE Alu -20 292 121 210 254 0 0 chr3 156246046 156246105 -71278473 + T-rich Low_complexity Low_complexity 1 59 0 761 156 7 7 chr3 156246116 156246251 -71278327 - AluJo SINE Alu -177 135 1 362 179 51 13 chr3 156246251 156246329 -71278249 + L1MC3 LINE L1 5843 5923 -1862 415 229 31 0 chr3 156246330 156246426 -71278152 + Tigger4(Zombi) DNA MER2_type 3 101 -2630 2377 77 0 3 chr3 156246429 156246727 -71277851 + AluY SINE Alu 1 297 -14 755 178 0 22 chr3 156246729 156246864 -71277714 - AluJo SINE Alu -170 132 1 282 73 0 0 chr3 156246977 156247018 -71277560 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 496 249 297 0 chr3 156247275 156247524 -71277054 + MER5C DNA MER1_type 1 323 -1 574 316 218 3 chr3 156247560 156247946 -71276632 - L2 LINE L2 -37 3276 2808 2052 117 0 46 chr3 156248284 156248609 -71275969 + AluSx SINE Alu 1 310 -2 237 277 48 24 chr3 156248715 156248798 -71275780 - L2 LINE L2 -1047 2267 2183 695 271 92 4 chr3 156248921 156249150 -71275428 - MIR SINE MIR -13 249 1 1632 168 29 42 chr3 156249292 156249601 -71274977 - AluJb SINE Alu -5 307 3 640 307 146 0 chr3 156249784 156250071 -71274507 - L2 LINE L2 -1271 2043 1715 1505 180 63 71 chr3 156250076 156250341 -71274237 + MLT2C2 LTR ERVL 1 267 -197 1618 210 4 0 chr3 156250341 156250647 -71273931 + AluJo SINE Alu 1 307 0 1505 180 63 71 chr3 156250647 156250773 -71273805 + MLT2C2 LTR ERVL 267 392 -72 217 211 0 0 chr3 156250784 156250822 -71273756 + (CGTG)n Simple_repeat Simple_repeat 3 40 0 255 79 0 0 chr3 156250823 156250861 -71273717 + (GA)n Simple_repeat Simple_repeat 1 38 0 225 125 0 25 chr3 156250872 156250912 -71273666 + MLT2C2 LTR ERVL 359 397 0 1179 300 152 31 chr3 156250916 156251679 -71272899 - L2 LINE L2 -1610 1704 850 571 143 0 0 chr3 156251983 156252074 -71272504 + L1P4 LINE L1 5560 5650 -511 880 115 11 115 chr3 156252074 156252228 -71272350 + THE1C LTR MaLR 1 135 -240 1897 120 46 3 chr3 156252228 156252511 -71272067 - AluSg SINE Alu -15 295 1 880 115 11 115 chr3 156252511 156252539 -71272039 + THE1C LTR MaLR 135 164 -211 1209 118 0 6 chr3 156252545 156252714 -71271864 - AluSg/x SINE Alu -10 302 135 2200 97 24 0 chr3 156252719 156253007 -71271571 - AluSx SINE Alu -17 295 1 1029 145 40 61 chr3 156253008 156253236 -71271342 + THE1C LTR MaLR 153 375 0 763 122 0 0 chr3 156253236 156253351 -71271227 + L1P4 LINE L1 5646 5760 -403 486 139 19 37 chr3 156253485 156253593 -71270985 + AluSg/x SINE Alu 203 308 -1 666 85 85 0 chr3 156253594 156253700 -71270878 + AluSg/x SINE Alu 177 291 -19 2000 143 3 13 chr3 156253703 156254004 -71270574 + AluSq SINE Alu 1 298 -15 624 62 0 72 chr3 156254037 156254134 -71270444 - HY4 scRNA scRNA -3 90 1 1874 144 0 26 chr3 156254358 156254670 -71269908 - AluSq SINE Alu -9 304 1 2192 125 0 3 chr3 156254781 156255085 -71269493 - AluSq SINE Alu -10 303 1 228 139 0 0 chr3 156256074 156256110 -71268468 + L1MC4 LINE L1 6665 6700 -1342 234 0 0 0 chr3 156256723 156256749 -71267829 + (TTA)n Simple_repeat Simple_repeat 2 27 0 740 133 172 0 chr3 156256752 156256880 -71267698 - AluSg/x SINE Alu -36 274 125 2131 124 0 0 chr3 156256884 156257183 -71267395 - AluSx SINE Alu -13 299 1 211 352 59 55 chr3 156257693 156257946 -71266632 - L2 LINE L2 -2593 721 468 193 284 0 30 chr3 156258422 156258489 -71266089 + MIR SINE MIR 68 132 -130 2031 133 3 37 chr3 156258512 156258835 -71265743 - AluSx SINE Alu 0 312 1 2160 129 0 0 chr3 156259517 156259826 -71264752 - AluSx SINE Alu -3 309 1 21 0 0 0 chr3 156260704 156260725 -71263853 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr3 156260936 156260964 -71263614 + AT_rich Low_complexity Low_complexity 1 28 0 2115 144 0 0 chr3 156261540 156261852 -71262726 + AluSx SINE Alu 1 312 0 410 219 0 0 chr3 156262039 156262112 -71262466 + MER5B DNA MER1_type 2 74 -104 21 0 0 0 chr3 156262154 156262175 -71262403 + AT_rich Low_complexity Low_complexity 1 21 0 423 0 0 0 chr3 156262538 156262585 -71261993 + (CA)n Simple_repeat Simple_repeat 1 47 0 369 220 53 30 chr3 156262602 156262734 -71261844 + MER103 DNA DNA 3 137 -29 492 306 36 15 chr3 156263482 156263678 -71260900 + L1MC/D LINE L1 5528 5727 -2081 467 252 238 0 chr3 156263759 156263965 -71260613 - MIR SINE MIR -6 256 2 316 367 80 5 chr3 156264584 156264783 -71259795 + MIR SINE MIR 31 244 -18 235 333 0 0 chr3 156264787 156264868 -71259710 + MIR SINE MIR 166 246 -16 1740 174 20 7 chr3 156265373 156265666 -71258912 + AluSx SINE Alu 1 297 -15 2167 94 0 64 chr3 156265934 156266262 -71258316 - AluSg SINE Alu -3 307 1 1479 178 57 0 chr3 156268020 156268318 -71256260 - L1MC3 LINE L1 0 7785 7471 1566 141 29 66 chr3 156268322 156268670 -71255908 - L1MB1 LINE L1 -103 6065 5731 * 6451 200 73 31 chr3 156268653 156269006 -71255572 - L1MB1 LINE L1 -1037 5109 4772 2028 141 3 3 chr3 156269006 156269310 -71255268 - AluJb SINE Alu -8 304 1 6451 200 73 31 chr3 156269310 156269632 -71254946 - L1MB1 LINE L1 -1374 4772 4465 2174 134 129 8 chr3 156269632 156270012 -71254566 + MSTA LTR MaLR 1 426 -2 6451 200 73 31 chr3 156270012 156270203 -71254375 - L1MB1 LINE L1 -1681 4465 4283 2076 119 34 0 chr3 156270203 156270497 -71254081 - AluSq SINE Alu -9 304 1 6451 200 73 31 chr3 156270497 156271207 -71253371 - L1MB1 LINE L1 -1863 4283 3448 2427 78 0 0 chr3 156271207 156271502 -71253076 - AluY SINE Alu -16 295 1 6451 200 73 31 chr3 156271502 156271672 -71252906 - L1MB1 LINE L1 -2698 3448 3287 1050 217 56 4 chr3 156271672 156271921 -71252657 - L1MC3 LINE L1 -305 7480 7219 234 320 41 10 chr3 156271922 156272019 -71252559 - MLT1F1 LTR MaLR -416 151 52 480 72 0 0 chr3 156272076 156272145 -71252433 + (GA)n Simple_repeat Simple_repeat 1 69 0 1140 183 9 120 chr3 156272146 156272463 -71252115 - AluJb SINE Alu -30 282 1 1771 131 66 0 chr3 156272504 156272778 -71251800 - AluJb SINE Alu -20 292 1 202 125 0 25 chr3 156272783 156272823 -71251755 + (GA)n Simple_repeat Simple_repeat 1 39 0 407 266 85 22 chr3 156273710 156273981 -71250597 + L1ME LINE L1 563 850 -5269 2218 93 3 3 chr3 156274377 156274666 -71249912 + AluSc SINE Alu 1 289 -20 239 255 151 84 chr3 156274798 156275499 -71249079 + L1ME LINE L1 2118 2865 -3264 1473 181 40 20 chr3 156275499 156275802 -71248776 + AluJo SINE Alu 4 312 0 236 219 27 14 chr3 156275824 156275897 -71248681 + L1ME LINE L1 2852 2925 -3204 253 264 44 0 chr3 156275926 156276017 -71248561 + (CATATA)n Simple_repeat Simple_repeat 2 96 0 22 70 0 0 chr3 156276020 156276063 -71248515 + AT_rich Low_complexity Low_complexity 1 43 0 621 186 53 0 chr3 156276114 156276227 -71248351 + FLAM_A SINE Alu 1 119 -14 1877 144 4 4 chr3 156276287 156276565 -71248013 + AluSx SINE Alu 3 280 -32 339 25 0 0 chr3 156276565 156276605 -71247973 + (CAAT)n Simple_repeat Simple_repeat 4 43 0 473 268 140 27 chr3 156276621 156276957 -71247621 + L1ME LINE L1 3456 3829 -2300 281 20 98 20 chr3 156276970 156277021 -71247557 + L1MC2 LINE L1 6290 6344 0 717 194 42 0 chr3 156277237 156277381 -71247197 + MER20 DNA MER1_type 69 218 -1 270 233 19 68 chr3 156277389 156277447 -71247131 + L1ME LINE L1 4559 4612 -1517 1705 192 0 0 chr3 156277447 156277763 -71246815 - AluJb SINE Alu 0 316 1 270 233 19 68 chr3 156277763 156277806 -71246772 + L1ME LINE L1 4612 4656 -1473 1649 189 0 16 chr3 156277833 156278139 -71246439 + AluJb SINE Alu 3 303 -9 408 254 146 41 chr3 156278157 156278406 -71246172 + L1ME LINE L1 4780 5076 -1053 1950 138 13 16 chr3 156278406 156278717 -71245861 - AluSx SINE Alu 0 312 3 408 254 146 41 chr3 156278717 156278810 -71245768 + L1ME LINE L1 5076 5158 -971 229 154 19 39 chr3 156278829 156278881 -71245697 - L2 LINE L2 -55 3258 3208 2080 136 0 3 chr3 156278990 156279292 -71245286 + AluSx SINE Alu 1 301 -11 515 315 92 30 chr3 156279293 156279789 -71244789 + L1ME LINE L1 5263 5786 -367 567 204 0 95 chr3 156279792 156279929 -71244649 + MER20 DNA MER1_type 1 124 -95 483 18 0 0 chr3 156280001 156280057 -71244521 + (TCTA)n Simple_repeat Simple_repeat 4 59 0 957 254 10 66 chr3 156280155 156280467 -71244111 - LTR16C LTR ERVL -4 476 194 1671 243 123 15 chr3 156280467 156280989 -71243589 + MER119 DNA MER1_type 1 578 -5 301 302 36 3 chr3 156282561 156282698 -71241880 - L1 LINE L1 -1983 4163 4015 1187 221 105 29 chr3 156282721 156283141 -71241437 - L1MC4 LINE L1 0 8042 7591 1900 104 0 0 chr3 156283142 156283393 -71241185 - AluSq SINE Alu -9 304 54 1832 218 18 21 chr3 156283401 156283471 -71241107 - L1MC4 LINE L1 -381 7661 7592 2266 120 0 0 chr3 156283471 156283772 -71240806 - AluSq SINE Alu -11 302 2 1832 218 18 21 chr3 156283772 156284137 -71240441 - L1MC4 LINE L1 -450 7592 7227 * 2299 222 70 73 chr3 156284126 156284422 -71240156 - L1MC4a LINE L1 -1473 6335 6040 183 42 0 0 chr3 156284422 156284446 -71240132 + (TC)n Simple_repeat Simple_repeat 2 25 0 2299 222 70 73 chr3 156284446 156284624 -71239954 - L1MC4a LINE L1 -1768 6040 5863 2267 95 0 14 chr3 156284624 156284919 -71239659 + AluSg SINE Alu 1 291 -19 2299 222 70 73 chr3 156284919 156285412 -71239166 - L1MC4a LINE L1 -1945 5863 5370 257 181 245 0 chr3 156285600 156285694 -71238884 + L1MC4a LINE L1 5315 5431 -2377 370 197 27 129 chr3 156285696 156285843 -71238735 + L1MB5 LINE L1 4972 5103 -1043 746 178 0 6 chr3 156285851 156286020 -71238558 + GA-rich Low_complexity Low_complexity 4 171 0 3617 206 30 8 chr3 156286059 156287006 -71237572 + L1MB5 LINE L1 5122 6084 -90 1528 210 16 30 chr3 156287010 156287362 -71237216 + MLT1A1 LTR MaLR 5 353 -12 391 204 20 10 chr3 156287362 156287460 -71237118 + L1MB5 LINE L1 6076 6174 0 1528 210 16 30 chr3 156287460 156287473 -71237105 + MLT1A1 LTR MaLR 353 365 0 696 312 119 18 chr3 156287498 156287841 -71236737 + L1MC4a LINE L1 5469 5846 -1962 571 329 72 9 chr3 156288513 156288735 -71235843 + MIR SINE MIR 14 249 -13 193 309 148 0 chr3 156288860 156288941 -71235637 + L2 LINE L2 3171 3263 -9 610 285 110 46 chr3 156290053 156290491 -71234087 + L1M4 LINE L1 3689 4154 -1992 27 29 0 0 chr3 156290916 156290950 -71233628 + AT_rich Low_complexity Low_complexity 1 34 0 1491 259 67 45 chr3 156290956 156291647 -71232931 - L1ME3 LINE L1 -9 6153 5450 290 151 0 2 chr3 156292070 156292124 -71232454 - L1ME LINE L1 -590 5574 5522 1753 170 10 3 chr3 156292180 156292474 -71232104 + AluJb SINE Alu 3 298 -14 1448 185 0 50 chr3 156292479 156292781 -71231797 + AluJo SINE Alu 1 287 -25 1798 120 6 102 chr3 156292792 156293126 -71231452 + AluSx SINE Alu 1 302 0 1693 158 13 39 chr3 156293203 156293514 -71231064 + AluJo SINE Alu 1 303 -9 21 0 0 0 chr3 156293656 156293677 -71230901 + AT_rich Low_complexity Low_complexity 1 21 0 1655 196 6 25 chr3 156293786 156294103 -71230475 + AluJo SINE Alu 1 311 -1 461 282 98 38 chr3 156294253 156294519 -71230059 + L1MCa LINE L1 1417 1698 -4728 242 195 23 58 chr3 156294550 156294582 -71229996 + L1MCa LINE L1 2465 2497 -3929 2090 85 4 0 chr3 156294582 156294854 -71229724 + AluY SINE Alu 1 273 -38 1947 110 7 14 chr3 156294854 156295146 -71229432 + AluY SINE Alu 2 291 -20 242 195 23 58 chr3 156295146 156295199 -71229379 + L1MCa LINE L1 2495 2548 -3878 222 37 0 0 chr3 156295235 156295262 -71229316 + (CA)n Simple_repeat Simple_repeat 2 28 0 252 184 0 0 chr3 156295343 156295392 -71229186 + (CATATA)n Simple_repeat Simple_repeat 2 50 0 1075 266 66 39 chr3 156295393 156295953 -71228625 + L1MCa LINE L1 2577 3151 -3275 249 268 0 0 chr3 156295971 156296042 -71228536 + L1MCa LINE L1 3235 3305 -3121 1653 182 0 0 chr3 156296118 156296382 -71228196 - AluJb SINE Alu -14 298 35 452 308 141 30 chr3 156296557 156296791 -71227787 - MLT1J1 LTR MaLR -135 311 52 303 336 29 29 chr3 156296920 156297060 -71227518 + L1ME LINE L1 5677 5816 -305 328 339 58 16 chr3 156298083 156298359 -71226219 + HERVL LTR ERVL 352 617 -5037 300 356 108 15 chr3 156298491 156298834 -71225744 + HERVL LTR ERVL 830 1204 -4560 2832 292 60 16 chr3 156298972 156300163 -71224415 + HERVL LTR ERVL 1375 2657 -3107 931 266 60 6 chr3 156300237 156300510 -71224068 - MLT1E LTR MaLR -63 530 277 337 245 63 44 chr3 156300746 156300854 -71223724 + HAL1 LINE L1 2346 2459 -48 2490 81 0 3 chr3 156300854 156301162 -71223416 - AluSc SINE Alu -2 307 1 337 245 63 44 chr3 156301162 156301212 -71223366 + HAL1 LINE L1 2459 2507 0 2858 10 0 0 chr3 156301414 156301725 -71222853 - AluYb8 SINE Alu -7 311 1 807 158 25 0 chr3 156301921 156302041 -71222537 - FLAM_C SINE Alu -18 125 3 226 246 0 0 chr3 156302492 156302549 -71222029 + L1ME LINE L1 5572 5628 -493 25 51 0 0 chr3 156302900 156302939 -71221639 + AT_rich Low_complexity Low_complexity 1 39 0 1737 108 14 25 chr3 156303165 156303442 -71221136 + AluSx SINE Alu 38 311 -1 683 104 78 0 chr3 156303443 156303558 -71221020 + AluSg/x SINE Alu 179 302 -10 2202 117 3 0 chr3 156303558 156303857 -71220721 + AluSx SINE Alu 1 300 -12 1232 148 0 0 chr3 156303868 156304050 -71220528 + AluSg/x SINE Alu 120 301 -11 2396 79 0 31 chr3 156304111 156304428 -71220150 + AluSg SINE Alu 1 307 -3 833 149 6 0 chr3 156305138 156305299 -71219279 + GA-rich Low_complexity Low_complexity 3 164 0 583 146 0 126 chr3 156305330 156305481 -71219097 + FLAM_A SINE Alu 1 132 -1 2147 137 50 19 chr3 156306091 156306455 -71218123 + THE1C LTR MaLR 1 375 0 21 71 0 0 chr3 156307436 156307478 -71217100 + AT_rich Low_complexity Low_complexity 1 42 0 366 205 0 0 chr3 156307521 156307599 -71216979 + MLT1J LTR MaLR 398 475 -36 223 289 211 18 chr3 156308562 156308676 -71215902 + L2 LINE L2 3177 3312 -1 1857 159 7 3 chr3 156308688 156308978 -71215600 - AluJb SINE Alu -21 291 1 1725 87 70 0 chr3 156309356 156309631 -71214947 + AluY SINE Alu 36 326 0 1385 146 95 14 chr3 156309948 156310243 -71214335 + Tigger1 DNA MER2_type 1848 2166 -252 1423 165 0 0 chr3 156310410 156310653 -71213925 + L1PA13 LINE L1 5916 6158 -5 723 170 0 30 chr3 156310810 156310994 -71213584 + FLAM_C SINE Alu 3 182 0 1116 154 12 0 chr3 156310995 156311157 -71213421 + AluJb SINE Alu 130 293 -19 230 292 34 0 chr3 156311240 156311329 -71213249 + HAL1 LINE L1 328 419 -2088 236 276 40 0 chr3 156311694 156311770 -71212808 + HAL1 LINE L1 804 882 -1625 1847 135 3 40 chr3 156311905 156312208 -71212370 + AluSx SINE Alu 1 292 -20 553 248 164 35 chr3 156312351 156312698 -71211880 + HAL1 LINE L1 1395 1786 -721 21 36 0 0 chr3 156312755 156312783 -71211795 + AT_rich Low_complexity Low_complexity 1 28 0 2957 72 5 0 chr3 156313090 156313495 -71211083 + L1P2 LINE L1 5329 5735 -419 559 217 101 22 chr3 156313608 156313746 -71210832 - AluJo SINE Alu -163 149 1 28 29 0 0 chr3 156313793 156313828 -71210750 + AT_rich Low_complexity Low_complexity 1 35 0 359 286 59 0 chr3 156314393 156314512 -71210066 + MIR SINE MIR 72 197 -65 1985 153 0 0 chr3 156314600 156314900 -71209678 - AluSx SINE Alu -12 300 1 3753 126 8 10 chr3 156314911 156315531 -71209047 - L1PA6 LINE L1 -2 6152 5534 1017 169 6 6 chr3 156315782 156315959 -71208619 + AluSg/x SINE Alu 118 294 -18 2382 91 0 0 chr3 156316210 156316508 -71208070 + AluSc SINE Alu 1 298 -11 2028 121 39 0 chr3 156316680 156316961 -71207617 + AluSx SINE Alu 1 292 -20 27 29 0 0 chr3 156317007 156317041 -71207537 + AT_rich Low_complexity Low_complexity 1 34 0 229 121 0 0 chr3 156317441 156317474 -71207104 + Tigger1 DNA MER2_type 2385 2417 -1 1813 174 0 10 chr3 156317718 156318012 -71206566 + AluSx SINE Alu 1 291 -21 239 178 76 102 chr3 156318024 156318142 -71206436 - L1ME LINE L1 -370 5792 5678 187 280 0 0 chr3 156318241 156318291 -71206287 + L2 LINE L2 3263 3312 -1 379 309 91 45 chr3 156318462 156319067 -71205511 - L1M4 LINE L1 -1712 4434 3802 309 248 142 18 chr3 156319099 156319212 -71205366 - L1M4 LINE L1 -2947 3199 3073 2582 49 0 3 chr3 156319350 156319654 -71204924 - AluY SINE Alu -8 303 1 1335 94 103 0 chr3 156319950 156320173 -71204405 + L1PA11 LINE L1 5583 5828 -346 1871 158 0 3 chr3 156320175 156320486 -71204092 + AluJb SINE Alu 1 310 0 238 299 37 19 chr3 156321074 156321181 -71203397 + MER94 DNA DNA 26 134 0 2068 121 3 10 chr3 156321461 156321759 -71202819 - AluSg SINE Alu -14 296 1 1693 132 107 14 chr3 156321765 156322082 -71202496 - AluSg SINE Alu 0 310 1 25 0 0 0 chr3 156322279 156322304 -71202274 + AT_rich Low_complexity Low_complexity 1 25 0 1027 90 0 0 chr3 156322719 156322897 -71201681 - AluY SINE Alu 0 326 149 849 93 0 0 chr3 156323176 156323284 -71201294 - AluSg/x SINE Alu -17 293 186 2306 63 0 11 chr3 156323583 156323897 -71200681 + AluY SINE Alu 1 311 0 2008 141 3 0 chr3 156324634 156324925 -71199653 - AluSx SINE Alu -15 297 6 469 229 101 9 chr3 156325128 156325237 -71199341 - L2 LINE L2 -2 3311 3193 221 309 202 11 chr3 156325290 156325375 -71199203 + L2 LINE L2 1738 1805 -1509 219 36 0 0 chr3 156325375 156325403 -71199175 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 221 309 202 11 chr3 156325403 156325495 -71199083 + L2 LINE L2 1805 1949 -1365 406 261 0 54 chr3 156325730 156325860 -71198718 + LTR41 LTR ERVL 51 173 -600 2952 149 137 125 chr3 156325994 156326173 -71198405 - L1MC3 LINE L1 0 7785 7610 1993 146 3 0 chr3 156326173 156326468 -71198110 - AluSx SINE Alu -16 296 1 2952 149 137 125 chr3 156326468 156326731 -71197847 - L1MC3 LINE L1 -175 7610 7352 1996 124 10 10 chr3 156326731 156327030 -71197548 - AluY SINE Alu -12 299 1 2952 149 137 125 chr3 156327030 156327166 -71197412 - L1MC3 LINE L1 -433 7352 7219 277 286 0 0 chr3 156327166 156327250 -71197328 - MLT1F1 LTR MaLR -442 125 42 2952 149 137 125 chr3 156327250 156327376 -71197202 - L1MC3 LINE L1 -566 7219 7096 2264 118 0 0 chr3 156327376 156327680 -71196898 - AluSx SINE Alu -5 307 4 2952 149 137 125 chr3 156327680 156327953 -71196625 - L1MC3 LINE L1 -689 7096 6709 2233 113 0 7 chr3 156327955 156328255 -71196323 + AluSx SINE Alu 1 298 -14 1176 207 67 4 chr3 156328258 156328528 -71196050 + AluJb SINE Alu 18 304 -8 1351 180 66 4 chr3 156328531 156328803 -71195775 + AluJb SINE Alu 18 306 -6 235 218 58 19 chr3 156328803 156328905 -71195673 - L1MC4a LINE L1 -1131 6677 6625 824 135 45 8 chr3 156329174 156329307 -71195271 + AluJo SINE Alu 1 138 -174 456 207 0 0 chr3 156329311 156329432 -71195146 + (TA)n Simple_repeat Simple_repeat 1 121 0 2264 109 3 7 chr3 156330013 156330315 -71194263 - AluSg SINE Alu -9 301 1 782 208 59 59 chr3 156330740 156330948 -71193630 - L1MC3 LINE L1 -1655 6130 5923 1859 153 8 66 chr3 156330948 156331134 -71193444 - MER46B DNA MER2_type -2497 234 39 2254 102 3 0 chr3 156331134 156331429 -71193149 - AluSp SINE Alu -17 296 1 1859 153 8 66 chr3 156331429 156331472 -71193106 - MER46B DNA MER2_type -2692 39 -5 1569 174 13 35 chr3 156331472 156331783 -71192795 - AluJb SINE Alu -8 304 1 1859 153 8 66 chr3 156331783 156331831 -71192747 - MER46B DNA MER2_type -2736 4294967291 105 2387 71 3 0 chr3 156331831 156332126 -71192452 - AluY SINE Alu -15 296 1 1859 153 8 66 chr3 156332126 156332225 -71192353 - MER46B DNA MER2_type -2625 106 3 782 208 59 59 chr3 156332225 156332304 -71192274 - L1MC3 LINE L1 -1861 5924 5843 769 156 7 7 chr3 156332304 156332439 -71192139 + AluJo SINE Alu 1 135 -177 819 157 76 58 chr3 156332501 156332673 -71191905 + AluJo SINE Alu 118 292 -20 1369 212 37 0 chr3 156332674 156333000 -71191578 - L1MC3 LINE L1 -1929 5856 5519 2328 81 0 37 chr3 156333000 156333321 -71191257 + AluY SINE Alu 1 309 -2 346 272 0 0 chr3 156333668 156333749 -71190829 + MLT1E2 LTR MaLR 100 180 -446 2333 84 0 3 chr3 156333757 156334053 -71190525 + AluY SINE Alu 1 295 -16 2495 87 0 0 chr3 156334053 156334364 -71190214 + AluY SINE Alu 1 311 0 1190 215 35 35 chr3 156334373 156334689 -71189889 + MLT1E2 LTR MaLR 302 617 -9 329 236 79 110 chr3 156334719 156334795 -71189783 - MIR SINE MIR -122 140 68 2360 93 0 7 chr3 156334795 156335097 -71189481 + AluSx SINE Alu 1 300 -12 329 236 79 110 chr3 156335097 156335147 -71189431 - MIR SINE MIR -194 68 18 647 238 0 0 chr3 156335525 156335651 -71188927 + FLAM_C SINE Alu 1 126 -17 219 114 0 0 chr3 156335651 156335686 -71188892 + (TAGA)n Simple_repeat Simple_repeat 2 36 0 1702 132 4 0 chr3 156335812 156336055 -71188523 - AluSx SINE Alu -68 244 1 1461 139 9 146 chr3 156336165 156336495 -71188083 + AluSx SINE Alu 1 285 -27 402 86 86 18 chr3 156336494 156336716 -71187862 + (TA)n Simple_repeat Simple_repeat 1 237 0 517 323 122 17 chr3 156336729 156337082 -71187496 - LTR16B LTR ERVL -23 441 52 274 225 0 28 chr3 156337487 156337558 -71187020 + L1ME4a LINE L1 5960 6028 -93 1824 167 0 16 chr3 156337609 156337914 -71186664 - AluJb SINE Alu -8 304 5 522 132 0 0 chr3 156338287 156338363 -71186215 + AluJ/FLAM SINE Alu 3 78 -234 1628 149 41 7 chr3 156338760 156339029 -71185549 - AluSx SINE Alu -32 280 3 2124 122 3 0 chr3 156339262 156339558 -71185020 + AluSx SINE Alu 1 297 -15 1406 197 76 3 chr3 156339876 156340165 -71184413 + AluJb SINE Alu 3 312 0 2016 156 0 0 chr3 156342080 156342375 -71182203 + AluSx SINE Alu 1 295 -17 747 62 0 0 chr3 156342375 156342472 -71182106 + (GGGA)n Simple_repeat Simple_repeat 4 100 0 1546 207 40 27 chr3 156342475 156342933 -71181645 + L1ME1 LINE L1 5709 6183 -1 496 185 8 34 chr3 156342937 156343056 -71181522 + L1MA10 LINE L1 6212 6327 -7 243 289 88 0 chr3 156343664 156343778 -71180800 + MLT1J LTR MaLR 386 509 -2 1016 201 65 15 chr3 156343804 156344067 -71180511 - L1MB7 LINE L1 -20 6164 5889 6055 127 30 84 chr3 156344186 156344710 -71179868 - Tigger3b DNA MER2_type -1862 1166 615 1505 201 4 14 chr3 156344710 156344988 -71179590 - AluJo SINE Alu -16 296 22 6055 127 30 84 chr3 156344988 156345695 -71178883 - Tigger3b DNA MER2_type -2413 615 2 1591 206 61 6 chr3 156345738 156346082 -71178496 + MLT1A1 LTR MaLR 1 363 -2 319 73 62 21 chr3 156346139 156346235 -71178343 + (TA)n Simple_repeat Simple_repeat 2 101 0 21 0 0 0 chr3 156346380 156346401 -71178177 + AT_rich Low_complexity Low_complexity 1 21 0 805 141 0 22 chr3 156346991 156347154 -71177424 + FLAM_C SINE Alu 2 161 0 768 267 84 50 chr3 156347232 156347557 -71177021 + L1MC/D LINE L1 5326 5673 -2135 2010 109 0 54 chr3 156347557 156347706 -71176872 + AluSx SINE Alu 1 126 -186 2392 72 0 3 chr3 156347706 156348012 -71176566 + AluY SINE Alu 1 305 -6 2010 109 0 54 chr3 156348012 156348175 -71176403 + AluSx SINE Alu 126 296 -16 768 267 84 50 chr3 156348175 156348324 -71176254 + L1MC/D LINE L1 5673 5816 -1992 1443 99 55 0 chr3 156348334 156348536 -71176042 + AluSg/x SINE Alu 86 298 -14 33 43 0 0 chr3 156348863 156348910 -71175668 + AT_rich Low_complexity Low_complexity 1 47 0 215 191 15 0 chr3 156349033 156349101 -71175477 + (TA)n Simple_repeat Simple_repeat 2 70 0 1563 156 46 78 chr3 156349101 156349448 -71175130 + MER2 DNA MER2_type 1 336 -9 186 115 96 58 chr3 156349642 156349694 -71174884 - L3 LINE CR1 -175 1402 1349 1982 203 35 105 chr3 156349900 156350425 -71174153 + L1MB2 LINE L1 3739 4299 -1847 1853 136 30 0 chr3 156350425 156350690 -71173888 + AluSx SINE Alu 16 288 -24 1982 203 35 105 chr3 156350690 156350703 -71173875 + L1MB2 LINE L1 4299 4311 -1835 201 74 0 0 chr3 156350703 156350730 -71173848 + (TA)n Simple_repeat Simple_repeat 1 27 0 1982 203 35 105 chr3 156350730 156350959 -71173619 + L1MB2 LINE L1 4311 4453 -1693 2726 169 53 9 chr3 156350961 156351528 -71173050 + L1MB2 LINE L1 5571 6162 -9 2010 142 0 0 chr3 156351528 156351823 -71172755 - AluSx SINE Alu -17 295 1 3322 246 58 25 chr3 156351844 156352727 -71171851 + L1MC1 LINE L1 4016 4868 -1278 2001 112 0 79 chr3 156352727 156353057 -71171521 + AluSx SINE Alu 1 304 -8 3322 246 58 25 chr3 156353057 156353292 -71171286 + L1MC1 LINE L1 4868 5094 -1052 2159 102 0 3 chr3 156353292 156353575 -71171003 + AluSx SINE Alu 1 282 -30 315 0 0 0 chr3 156353578 156353613 -71170965 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 3322 246 58 25 chr3 156353613 156353634 -71170944 + L1MC1 LINE L1 5095 5198 -948 1964 136 136 11 chr3 156353674 156354042 -71170536 + L1MC1 LINE L1 5579 5992 -341 1521 240 28 39 chr3 156354058 156354516 -71170062 - MER65C LTR ERV1 -8 453 1 666 312 67 35 chr3 156354869 156355477 -71169101 - MER57-int LTR ERV1 -388 6703 4225 2146 127 0 0 chr3 156355997 156356296 -71168282 - AluSx SINE Alu -13 299 1 1898 154 27 0 chr3 156356659 156356951 -71167627 - AluSx SINE Alu -12 300 1 1497 124 0 13 chr3 156357904 156358137 -71166441 + AluSg/x SINE Alu 82 311 -1 529 96 36 0 chr3 156359262 156359345 -71165233 + Alu SINE Alu 224 309 -2 2426 74 6 6 chr3 156359392 156359703 -71164875 + AluY SINE Alu 1 311 0 2461 61 0 3 chr3 156359881 156360177 -71164401 + AluY SINE Alu 2 296 -15 1089 210 65 0 chr3 156360520 156360749 -71163829 + AluJb SINE Alu 1 244 -68 350 297 93 28 chr3 156360864 156361046 -71163532 + L1ME LINE L1 5561 5754 -367 1960 147 111 26 chr3 156361962 156362377 -71162201 + LTR10A LTR ERV1 99 548 -61 695 196 57 65 chr3 156362536 156362766 -71161812 + L1MC4 LINE L1 7629 7856 -186 479 237 17 0 chr3 156362963 156363081 -71161497 + L1MC4 LINE L1 7923 8042 0 428 319 83 13 chr3 156363141 156363298 -71161280 - L2 LINE L2 -3 3310 3143 2256 118 3 0 chr3 156363365 156363670 -71160908 + AluSx SINE Alu 1 306 -6 1745 153 17 14 chr3 156363675 156363999 -71160579 + AluJo SINE Alu 1 325 0 442 291 107 0 chr3 156364329 156364537 -71160041 + MIR SINE MIR 21 258 -4 1421 92 0 39 chr3 156364827 156365034 -71159544 + AluSg/x SINE Alu 95 293 -19 21 0 0 0 chr3 156365829 156365850 -71158728 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 156365883 156365903 -71158675 + (A)n Simple_repeat Simple_repeat 1 20 0 1921 98 3 68 chr3 156365906 156366201 -71158377 + AluSx SINE Alu 1 276 -36 649 212 37 26 chr3 156366228 156366417 -71158161 + L1MC5 LINE L1 7702 7892 -69 25 31 0 0 chr3 156367454 156367486 -71157092 + AT_rich Low_complexity Low_complexity 1 32 0 1919 139 20 3 chr3 156367562 156367863 -71156715 + AluSx SINE Alu 1 306 -6 3317 203 40 35 chr3 156367863 156367997 -71156581 + MER63C DNA MER1_type 94 226 -834 2373 65 7 7 chr3 156367997 156368289 -71156289 - AluY SINE Alu -19 292 1 3317 203 40 35 chr3 156368289 156368987 -71155591 + MER63C DNA MER1_type 226 930 0 364 307 110 44 chr3 156369089 156369408 -71155170 + L2 LINE L2 2055 2394 -920 1005 165 0 0 chr3 156369797 156369961 -71154617 + AluSg/x SINE Alu 136 299 -11 642 233 92 34 chr3 156370003 156370035 -71154543 - MER58A DNA MER1_type -2199 221 192 2186 116 3 7 chr3 156370035 156370345 -71154233 + AluSg SINE Alu 1 309 -1 642 233 92 34 chr3 156370345 156370518 -71154060 - MER58A DNA MER1_type -2228 192 4 412 325 24 18 chr3 156370624 156370790 -71153788 - MIR SINE MIR -56 206 40 440 302 62 16 chr3 156371380 156371572 -71153006 - L1MC/D LINE L1 -2001 5807 5607 285 324 173 22 chr3 156371715 156371894 -71152684 + L2 LINE L2 2538 2689 -625 1550 160 108 15 chr3 156371894 156372237 -71152341 + THE1C LTR MaLR 1 375 0 285 324 173 22 chr3 156372237 156372335 -71152243 + L2 LINE L2 2689 2857 -457 183 246 0 58 chr3 156372345 156372414 -71152164 + L3b LINE CR1 1212 1276 -307 213 149 0 60 chr3 156373338 156373405 -71151173 + (TA)n Simple_repeat Simple_repeat 2 64 0 2166 123 3 0 chr3 156373803 156374105 -71150473 + AluSx SINE Alu 1 303 -9 790 230 103 10 chr3 156374316 156374520 -71150058 - MER58A DNA MER1_type -1 223 1 26 30 0 0 chr3 156374876 156374909 -71149669 + AT_rich Low_complexity Low_complexity 1 33 0 3075 171 71 27 chr3 156374952 156375624 -71148954 + L1MC1 LINE L1 5623 6324 -9 400 275 141 33 chr3 156375686 156376075 -71148503 + L1MCa LINE L1 1233 1663 -4763 311 300 88 40 chr3 156376085 156376382 -71148196 + L1M4 LINE L1 13 323 -6219 948 306 37 63 chr3 156376416 156377036 -71147542 + L1M4 LINE L1 451 1054 -5488 712 199 67 1 chr3 156377129 156377308 -71147270 + L1M4 LINE L1 1771 1997 -4649 1999 133 7 7 chr3 156377308 156377601 -71146977 + AluSq SINE Alu 1 293 -20 896 145 23 181 chr3 156377635 156377731 -71146847 + AluJo SINE Alu 46 156 -156 1920 137 0 74 chr3 156377731 156378068 -71146510 + AluSx SINE Alu 1 312 0 896 145 23 181 chr3 156378068 156378281 -71146297 + AluJo SINE Alu 156 306 -6 3305 259 58 18 chr3 156378396 156379857 -71144721 + L1M4 LINE L1 3413 4982 -1662 2334 101 0 0 chr3 156379862 156380169 -71144409 + AluSq SINE Alu 1 307 -6 3111 163 9 18 chr3 156380450 156381016 -71143562 - MER6A DNA MER2_type -13 592 32 305 313 139 14 chr3 156381479 156381623 -71142955 + MIR SINE MIR 18 179 -83 256 182 0 36 chr3 156381701 156381756 -71142822 + L2 LINE L2 3194 3246 -67 699 122 16 24 chr3 156381769 156381892 -71142686 - AluJo/FRAM SINE Alu -14 298 177 * 782 147 29 22 chr3 156381884 156382020 -71142558 - AluJo SINE Alu -90 222 86 2267 100 0 26 chr3 156382022 156382331 -71142247 - AluSq SINE Alu -12 301 1 1981 133 4 0 chr3 156382517 156382796 -71141782 + AluSx SINE Alu 1 280 -32 228 173 0 19 chr3 156383035 156383087 -71141491 + AluSp/q SINE Alu 253 303 0 715 195 0 34 chr3 156383100 156383249 -71141329 + AluJb SINE Alu 157 300 -12 2528 63 0 0 chr3 156384265 156384565 -71140013 - AluSx SINE Alu -12 300 1 2206 95 3 7 chr3 156384567 156384871 -71139707 - AluSx SINE Alu -9 303 1 2588 221 83 47 chr3 156384972 156385811 -71138767 + L1MC4a LINE L1 6930 7799 -9 2217 109 26 0 chr3 156386157 156386461 -71138117 - AluSx SINE Alu 0 312 1 1693 176 56 77 chr3 156386587 156387054 -71137524 - MLT1C LTR MaLR 0 467 11 337 297 91 46 chr3 156387115 156387290 -71137288 - L2 LINE L2 -9 3304 3122 1977 164 0 0 chr3 156387405 156387704 -71136874 - AluJb SINE Alu -13 299 1 1683 160 6 46 chr3 156388600 156388925 -71135653 - AluJb SINE Alu 0 312 1 541 169 0 0 chr3 156390107 156390184 -71134394 - AluJ/FLAM SINE Alu -235 77 1 1544 119 20 78 chr3 156390431 156390539 -71134039 + L1MA5A LINE L1 6016 6129 -168 2133 80 0 22 chr3 156390539 156390814 -71133764 + AluSg SINE Alu 19 287 -23 1544 119 20 78 chr3 156390814 156391000 -71133578 + L1MA5A LINE L1 6129 6293 -4 792 151 48 54 chr3 156391030 156391184 -71133394 + MER119 DNA MER1_type 233 387 -196 2334 71 7 0 chr3 156391184 156391480 -71133098 + AluSp SINE Alu 1 298 -15 792 151 48 54 chr3 156391480 156391491 -71133087 + MER119 DNA MER1_type 387 397 -186 735 183 172 32 chr3 156391788 156392073 -71132505 + L1MC5 LINE L1 7607 7931 -30 360 350 88 38 chr3 156392504 156393052 -71131526 + L2 LINE L2 2397 2971 -343 2198 120 10 0 chr3 156393095 156393403 -71131175 + AluSx SINE Alu 1 311 -1 1074 207 33 5 chr3 156393404 156393617 -71130961 + MLT1A1 LTR MaLR 145 363 -2 488 299 14 20 chr3 156393621 156393768 -71130810 + ERVL LTR ERVL 2052 2197 -2799 2198 102 0 0 chr3 156393793 156394107 -71130471 + AluSx SINE Alu 1 314 0 1602 178 125 9 chr3 156394147 156394467 -71130111 + MSTD LTR MaLR 1 357 -39 307 184 58 103 chr3 156394467 156394554 -71130024 + AluJ/FLAM SINE Alu 1 83 -219 353 299 73 34 chr3 156394811 156395015 -71129563 + ERVL LTR ERVL 5172 5383 -381 1029 256 199 54 chr3 156395130 156395314 -71129264 + LTR16A LTR ERVL 1 157 -293 1994 148 7 0 chr3 156395314 156395612 -71128966 + AluSx SINE Alu 5 304 -8 1029 256 199 54 chr3 156395612 156395814 -71128764 + LTR16A LTR ERVL 157 443 -7 1655 163 7 39 chr3 156395994 156396301 -71128277 + AluJo SINE Alu 2 298 -14 2207 131 0 0 chr3 156396327 156396633 -71127945 - AluSx SINE Alu -6 306 1 1637 192 3 3 chr3 156396662 156396954 -71127624 - AluJb SINE Alu -20 292 1 1879 108 68 7 chr3 156396990 156397269 -71127309 - AluSc SINE Alu -13 296 1 1938 138 0 27 chr3 156397485 156397783 -71126795 - AluSx SINE Alu -22 290 1 2172 114 0 25 chr3 156397849 156398166 -71126412 - AluY SINE Alu -2 309 1 591 146 29 10 chr3 156398379 156398482 -71126096 + FRAM SINE Alu 59 163 -13 200 179 0 36 chr3 156398496 156398552 -71126026 + A-rich Low_complexity Low_complexity 2 55 0 1726 188 0 13 chr3 156399314 156399628 -71124950 + AluJo SINE Alu 2 311 -1 26 74 0 0 chr3 156399694 156399748 -71124830 + AT_rich Low_complexity Low_complexity 1 54 0 273 261 0 0 chr3 156400539 156400604 -71123974 - L1ME LINE L1 -673 5448 5384 300 360 26 0 chr3 156400681 156400834 -71123744 + L1M4 LINE L1 4034 4190 -1956 665 164 206 69 chr3 156401031 156401220 -71123358 - MER20 DNA MER1_type -1 218 4 2352 97 10 0 chr3 156401222 156401531 -71123047 + AluSp SINE Alu 1 312 -1 784 235 113 0 chr3 156401723 156401944 -71122634 - MIR SINE MIR 0 262 17 6347 197 35 27 chr3 156401986 156403711 -71120867 + L1MB3 LINE L1 3752 5501 -682 1973 139 10 3 chr3 156403711 156404005 -71120573 + AluSx SINE Alu 1 296 -16 6347 197 35 27 chr3 156404005 156404682 -71119896 + L1MB3 LINE L1 5501 6171 -12 261 0 0 0 chr3 156404847 156404876 -71119702 + (TG)n Simple_repeat Simple_repeat 2 30 0 280 283 40 45 chr3 156405058 156405281 -71119297 + L1ME LINE L1 5548 5769 -352 2168 122 33 0 chr3 156405416 156405719 -71118859 - AluSp SINE Alu 0 313 1 1607 207 0 3 chr3 156405768 156406072 -71118506 + AluJb SINE Alu 1 303 -9 863 182 6 65 chr3 156406271 156406441 -71118137 + FRAM SINE Alu 1 160 -6 668 246 0 0 chr3 156408127 156408249 -71116329 + FLAM_C SINE Alu 2 123 -20 24 0 0 0 chr3 156408249 156408273 -71116305 + AT_rich Low_complexity Low_complexity 1 24 0 1922 162 7 3 chr3 156408916 156409224 -71115354 + AluJb SINE Alu 1 309 -3 1825 154 35 70 chr3 156409546 156409916 -71114662 + MER46B DNA MER2_type 2 233 -3 813 258 81 0 chr3 156410012 156410210 -71114368 - MIR SINE MIR -38 224 11 2201 128 0 0 chr3 156410383 156410681 -71113897 - AluSx SINE Alu -14 298 1 1671 175 7 7 chr3 156410689 156410974 -71113604 - AluJb SINE Alu -27 285 1 1953 143 3 7 chr3 156410998 156411298 -71113280 + AluSx SINE Alu 1 299 -13 219 36 0 0 chr3 156411303 156411331 -71113247 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 729 247 44 64 chr3 156411458 156411709 -71112869 - MIR SINE MIR -2 260 15 447 226 116 65 chr3 156412372 156412571 -71112007 - MER112 DNA MER1_type -51 209 1 654 183 108 59 chr3 156412747 156412933 -71111645 - MER106B DNA MER1_type 0 1059 42 672 265 27 0 chr3 156413168 156413315 -71111263 + MLT1-int LTR MaLR 959 1109 -262 9173 43 9 2 chr3 156413425 156414551 -71110027 + L1P LINE L1 3267 4400 -1746 9557 96 7 8 chr3 156414651 156415403 -71109175 - L1P LINE L1 -1693 4453 3702 2246 118 0 10 chr3 156415403 156415717 -71108861 - AluY SINE Alu 0 311 1 9557 96 7 8 chr3 156415717 156416339 -71108239 - L1P LINE L1 -2444 3702 3081 1927 151 6 28 chr3 156416670 156416989 -71107589 + AluSx SINE Alu 1 312 0 2164 123 0 10 chr3 156417138 156417448 -71107130 - AluSx SINE Alu -5 307 1 2089 138 0 0 chr3 156417835 156418124 -71106454 - AluSq SINE Alu -24 289 1 193 276 146 32 chr3 156418199 156418322 -71106256 + MIR SINE MIR 57 193 -69 314 269 21 11 chr3 156418574 156418667 -71105911 - MIR SINE MIR -102 160 67 788 224 0 24 chr3 156418836 156419006 -71105572 - AluJb SINE Alu -10 302 137 2098 128 0 19 chr3 156419016 156419328 -71105250 - AluSx SINE Alu -3 309 4 1930 147 3 10 chr3 156419383 156419690 -71104888 - AluSx SINE Alu -7 305 1 194 302 135 8 chr3 156420319 156420445 -71104133 + L2 LINE L2 3164 3305 -8 740 108 108 0 chr3 156420452 156420572 -71104006 + L1MA8 LINE L1 5820 5952 -339 202 191 0 43 chr3 156420687 156420734 -71103844 + CT-rich Low_complexity Low_complexity 1 45 0 1673 176 0 26 chr3 156420734 156421036 -71103542 - AluSq SINE Alu -19 294 1 1122 166 0 6 chr3 156421047 156421228 -71103350 - AluSg/x SINE Alu -12 298 119 1130 140 12 0 chr3 156421231 156421395 -71103183 - AluSq SINE Alu -19 294 129 2269 89 3 3 chr3 156422698 156422989 -71101589 - AluSq SINE Alu -6 307 17 186 232 36 18 chr3 156423010 156423066 -71101512 + MIR3 SINE MIR 152 208 0 2270 125 0 0 chr3 156423155 156423467 -71101111 - AluSx SINE Alu 0 312 1 447 277 74 35 chr3 156423829 156424031 -71100547 + MIR SINE MIR 48 257 -5 814 174 103 22 chr3 156424267 156424358 -71100220 - AluJo SINE Alu -81 231 149 624 67 0 0 chr3 156424358 156424448 -71100130 + (GA)n Simple_repeat Simple_repeat 1 90 0 814 174 103 22 chr3 156424448 156424540 -71100038 - AluJo SINE Alu -163 149 33 315 275 211 7 chr3 156424782 156424924 -71099654 + MIR SINE MIR 81 251 -11 276 265 51 82 chr3 156424981 156425079 -71099499 - MER5B DNA MER1_type -75 114 17 1024 199 44 0 chr3 156425210 156425391 -71099187 - MER5A DNA MER1_type 0 189 1 263 300 7 64 chr3 156425406 156425546 -71099032 + L2 LINE L2 2926 3057 -215 469 330 28 56 chr3 156425663 156425842 -71098736 - MER91A DNA MER1_type -22 174 1 222 324 194 0 chr3 156425977 156426085 -71098493 + L2 LINE L2 3144 3272 0 506 278 85 45 chr3 156426373 156426549 -71098029 - MIR3 SINE MIR -23 185 3 198 0 0 0 chr3 156426585 156426607 -71097971 + (A)n Simple_repeat Simple_repeat 1 22 0 2142 120 0 0 chr3 156426963 156427255 -71097323 - AluSg SINE Alu -18 292 1 2120 123 7 3 chr3 156427432 156427733 -71096845 - AluJo SINE Alu -10 302 1 452 162 0 0 chr3 156427830 156427904 -71096674 - MIR SINE MIR -108 154 81 2260 78 0 7 chr3 156428173 156428497 -71096081 + AluY SINE Alu 1 322 0 471 118 0 15 chr3 156429019 156429087 -71095491 - AluSg/x SINE Alu -161 148 82 1267 171 9 5 chr3 156429087 156429304 -71095274 - AluSx SINE Alu -94 218 1 342 234 109 39 chr3 156429409 156429537 -71095041 - L2 LINE L2 -8 3305 3169 2269 100 0 0 chr3 156429554 156429844 -71094734 + AluSg SINE Alu 1 290 -20 409 157 16 91 chr3 156429856 156429977 -71094601 + L1MA8 LINE L1 5925 6036 -255 1982 130 0 0 chr3 156429977 156430262 -71094316 + AluSx SINE Alu 3 287 -25 867 149 0 27 chr3 156430266 156430414 -71094164 + AluSg/x SINE Alu 130 273 -37 1289 120 100 24 chr3 156430436 156430686 -71093892 + L1MA8 LINE L1 6019 6287 -4 346 265 60 0 chr3 156430902 156430985 -71093593 + MIR SINE MIR 18 105 -157 1434 150 65 17 chr3 156431007 156431300 -71093278 + AluJb SINE Alu 6 312 0 2177 102 3 17 chr3 156431304 156431599 -71092979 + AluSq SINE Alu 1 291 -22 192 200 0 0 chr3 156431607 156431647 -71092931 + (CATATA)n Simple_repeat Simple_repeat 2 41 0 965 122 61 0 chr3 156431876 156432024 -71092554 + AluSq SINE Alu 142 298 -15 293 141 14 113 chr3 156432136 156432207 -71092371 + MIR SINE MIR 117 180 -82 1922 163 7 3 chr3 156432239 156432546 -71092032 - AluJb SINE Alu -4 308 1 1310 254 118 14 chr3 156432758 156433175 -71091403 + LTR40b LTR ERVL 3 462 0 584 192 0 80 chr3 156433323 156433374 -71091204 + AluJb SINE Alu 92 146 -166 2268 84 14 0 chr3 156433374 156433661 -71090917 + AluY SINE Alu 5 295 -16 584 192 0 80 chr3 156433661 156433734 -71090844 + AluJb SINE Alu 145 206 -106 2262 114 3 0 chr3 156434249 156434556 -71090022 + AluSx SINE Alu 1 308 -4 2125 139 0 0 chr3 156434569 156434863 -71089715 + AluSx SINE Alu 1 294 -18 875 228 12 0 chr3 156435844 156436011 -71088567 - AluJb SINE Alu -70 242 74 2649 234 116 38 chr3 156436126 156436411 -71088167 + L1M4 LINE L1 2574 2835 -3311 2181 127 3 7 chr3 156436411 156436718 -71087860 + AluSx SINE Alu 1 306 -6 2649 234 116 38 chr3 156436718 156437064 -71087514 + L1M4 LINE L1 2835 3153 -2993 2114 132 0 3 chr3 156437064 156437360 -71087218 + AluSq SINE Alu 1 295 -18 2649 234 116 38 chr3 156437360 156437917 -71086661 + L1M4 LINE L1 3153 3856 -2290 690 299 34 49 chr3 156437901 156438026 -71086552 - L1ME LINE L1 -388 5782 5657 * 2142 110 7 0 chr3 156438026 156438318 -71086260 + AluSp SINE Alu 1 294 -19 690 299 34 49 chr3 156438318 156438580 -71085998 - L1ME LINE L1 -513 5657 5401 2290 116 0 0 chr3 156438653 156438955 -71085623 - AluSx SINE Alu -10 302 1 538 219 43 43 chr3 156438970 156439134 -71085444 - MER112 DNA MER1_type -96 164 1 277 114 19 2 chr3 156439233 156439293 -71085285 + L1MA3 LINE L1 6244 6305 0 1961 158 30 21 chr3 156439370 156439705 -71084873 - MER1B DNA MER1_type -1 338 1 1327 126 65 9 chr3 156439717 156439931 -71084647 + MER30 DNA MER1_type 5 230 0 1297 241 70 64 chr3 156440294 156440750 -71083828 - HERV16 LTR ERVL -2953 2043 1585 2185 126 0 0 chr3 156440822 156441124 -71083454 - AluY SINE Alu -9 302 1 1959 137 11 0 chr3 156441132 156441416 -71083162 - AluSx SINE Alu -25 287 1 2321 96 3 29 chr3 156441418 156441732 -71082846 - AluSx SINE Alu -6 306 1 1808 156 21 3 chr3 156441746 156442029 -71082549 - AluJb SINE Alu -22 290 3 465 217 0 11 chr3 156442412 156442504 -71082074 - MLT1A2 LTR MaLR 0 374 284 192 77 0 0 chr3 156442970 156442996 -71081582 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 209 260 91 26 chr3 156442999 156443076 -71081502 + L2 LINE L2 2380 2461 -853 366 280 77 44 chr3 156443118 156443300 -71081278 + L2 LINE L2 2595 2782 -532 2029 274 82 16 chr3 156443318 156443879 -71080699 - MER115 DNA AcHobo 0 693 96 195 316 37 9 chr3 156443955 156444087 -71080491 + L2 LINE L2 2849 2983 -330 461 257 72 13 chr3 156444267 156444419 -71080159 + L2 LINE L2 3152 3312 -1 1752 167 30 0 chr3 156444731 156445001 -71079577 - AluJo SINE Alu -28 284 7 2096 85 18 18 chr3 156445020 156445321 -71079257 - AluSg SINE Alu 0 301 1 2069 130 0 10 chr3 156445529 156445848 -71078730 - AluSx SINE Alu 0 312 1 740 223 171 60 chr3 156445860 156446111 -71078467 - AluSg1 SINE Alu -30 279 1 558 222 53 6 chr3 156446113 156446284 -71078294 - L1ME4a LINE L1 0 6121 5943 362 132 0 0 chr3 156446285 156446338 -71078240 - Alu SINE Alu -9 291 239 1514 203 27 20 chr3 156446895 156447191 -71077387 + AluJo SINE Alu 1 298 -14 1483 105 24 14 chr3 156447803 156448012 -71076566 + AluSg/x SINE Alu 86 296 -16 1618 244 21 36 chr3 156448498 156448966 -71075612 - MER65C LTR ERV1 0 461 1 1482 160 65 27 chr3 156448966 156449252 -71075326 + L1MC1 LINE L1 6011 6310 -23 1093 253 58 6 chr3 156449254 156449582 -71074996 + L1ME1 LINE L1 5808 6152 -14 354 180 101 0 chr3 156449870 156449959 -71074619 + MER5A DNA MER1_type 6 103 -86 453 248 60 8 chr3 156449996 156450113 -71074465 + MER5B DNA MER1_type 47 169 -9 2513 113 80 8 chr3 156450598 156451220 -71073358 + L1P5 LINE L1 5002 5667 -484 276 204 0 0 chr3 156451210 156451259 -71073319 + L1MD3 LINE L1 5879 5927 -2068 * 3444 99 8 23 chr3 156451266 156451789 -71072789 + L1PB2 LINE L1 5636 6150 -1 1101 189 30 5 chr3 156451948 156452149 -71072429 - AluJb SINE Alu -7 305 100 868 98 0 8 chr3 156452173 156452296 -71072282 + L1PB2 LINE L1 5830 5951 -200 1922 134 24 7 chr3 156452521 156452812 -71071766 + AluJb SINE Alu 12 307 -5 380 193 74 140 chr3 156452812 156453055 -71071523 + L1MB5 LINE L1 2383 2609 -3537 1342 81 0 12 chr3 156453059 156453231 -71071347 + AluSg SINE Alu 1 170 -140 499 182 45 0 chr3 156453232 156453342 -71071236 + L1MB5 LINE L1 3786 3900 -2246 423 0 0 0 chr3 156453344 156453391 -71071187 + (CA)n Simple_repeat Simple_repeat 2 48 0 2218 126 8 72 chr3 156453406 156453795 -71070783 + THE1B LTR MaLR 1 364 0 550 187 0 0 chr3 156453826 156453917 -71070661 + AluJ/FLAM SINE Alu 2 92 -220 708 194 0 0 chr3 156453930 156454059 -71070519 + FRAM SINE Alu 42 170 -6 5176 198 69 16 chr3 156454059 156455479 -71069099 + L1MB5 LINE L1 3958 5535 -639 2580 143 38 22 chr3 156455479 156455928 -71068650 - MSTB2 LTR MaLR -1 456 1 5176 198 69 16 chr3 156455928 156456604 -71067974 + L1MB5 LINE L1 5535 6174 0 735 205 5 100 chr3 156456813 156456973 -71067605 - AluJb SINE Alu -55 257 116 2194 124 0 0 chr3 156456973 156457271 -71067307 + AluSx SINE Alu 1 298 -14 735 205 5 100 chr3 156457271 156457300 -71067278 - AluJb SINE Alu -196 116 86 1608 179 7 7 chr3 156457432 156457711 -71066867 + AluJo SINE Alu 15 293 -19 2142 136 0 0 chr3 156457718 156458020 -71066558 + AluSx SINE Alu 1 302 -10 22 0 0 0 chr3 156459022 156459044 -71065534 + AT_rich Low_complexity Low_complexity 1 22 0 272 193 36 12 chr3 156459044 156459127 -71065451 + L1ME3A LINE L1 4383 4467 -1679 251 163 125 0 chr3 156459247 156459327 -71065251 + L1ME3A LINE L1 4623 4712 -1434 1218 183 0 5 chr3 156459328 156459541 -71065037 + AluJo SINE Alu 86 297 -15 1283 264 110 41 chr3 156459579 156459981 -71064597 + L1ME3A LINE L1 4748 5121 -1049 2163 123 3 3 chr3 156459981 156460281 -71064297 - AluSc SINE Alu -9 300 1 1283 264 110 41 chr3 156460281 156460774 -71063804 + L1ME3A LINE L1 5121 5723 -447 2248 99 0 3 chr3 156460774 156461067 -71063511 + AluSq SINE Alu 1 292 -21 1283 264 110 41 chr3 156461067 156461258 -71063320 + L1ME3A LINE L1 5723 5899 -271 2201 125 0 0 chr3 156461266 156461563 -71063015 + AluSx SINE Alu 1 297 -15 1069 188 114 41 chr3 156461577 156461706 -71062872 + AluJo SINE Alu 7 125 -187 2063 146 0 3 chr3 156461706 156462015 -71062563 + AluSx SINE Alu 1 308 -4 1069 188 114 41 chr3 156462015 156462130 -71062448 + AluJo SINE Alu 125 269 -43 662 220 23 0 chr3 156462280 156462412 -71062166 + AluJo SINE Alu 2 136 -176 2474 53 0 0 chr3 156462412 156462695 -71061883 + AluY SINE Alu 1 283 -28 293 164 71 64 chr3 156463224 156463364 -71061214 + L1MC5 LINE L1 7786 7926 -35 21 36 0 0 chr3 156463364 156463392 -71061186 + AT_rich Low_complexity Low_complexity 1 28 0 2063 132 0 7 chr3 156463637 156463933 -71060645 + AluSx SINE Alu 1 294 -18 2130 219 99 5 chr3 156463949 156464512 -71060066 + L1MB7 LINE L1 5549 6164 -20 756 129 0 0 chr3 156464577 156464701 -71059877 + (TGGG)n Simple_repeat Simple_repeat 2 125 0 2279 110 3 0 chr3 156464891 156465190 -71059388 + AluSp SINE Alu 3 302 -11 2277 125 3 0 chr3 156465502 156465813 -71058765 + AluSx SINE Alu 1 312 0 182 270 27 63 chr3 156465960 156466071 -71058507 - MIR SINE MIR -143 119 13 432 157 43 0 chr3 156466420 156466490 -71058088 - U6 snRNA snRNA -34 73 1 2110 62 28 109 chr3 156466602 156466923 -71057655 + AluY SINE Alu 1 295 -16 1749 159 34 10 chr3 156466934 156467229 -71057349 + AluJb SINE Alu 1 302 -10 21 0 0 0 chr3 156467405 156467426 -71057152 + AT_rich Low_complexity Low_complexity 1 21 0 309 19 0 57 chr3 156467604 156467657 -71056921 + (TCTCCC)n Simple_repeat Simple_repeat 6 55 0 6003 65 24 56 chr3 156467661 156468552 -71056026 + SVA Other Other 5 866 -520 6705 65 6 54 chr3 156468615 156469615 -71054963 + SVA Other Other 433 1384 -2 255 355 57 0 chr3 156469643 156469784 -71054794 - L2 LINE L2 -2106 1208 1060 1406 200 102 12 chr3 156470405 156470740 -71053838 + HsTC2 DNA Tc2 232 596 -1302 233 300 167 26 chr3 156470854 156471124 -71053454 + L2 LINE L2 2384 2691 -623 665 159 91 23 chr3 156471124 156471256 -71053322 - MER20 DNA MER1_type 0 219 79 733 129 40 32 chr3 156471291 156471415 -71053163 - MER20 DNA MER1_type -93 126 2 1953 156 7 0 chr3 156471431 156471720 -71052858 - AluSx SINE Alu -21 291 1 446 279 111 34 chr3 156471739 156472154 -71052424 + L2 LINE L2 2723 3185 -128 21 36 0 0 chr3 156472763 156472791 -71051787 + AT_rich Low_complexity Low_complexity 1 28 0 2253 110 3 3 chr3 156472872 156473180 -71051398 + AluSq SINE Alu 1 308 -5 761 278 53 5 chr3 156473393 156473625 -71050953 + MIR SINE MIR 19 262 0 338 269 13 0 chr3 156473684 156473762 -71050816 - MER3 DNA MER1_type -129 80 2 1572 158 3 81 chr3 156473980 156474303 -71050275 - AluJb SINE Alu -14 298 1 534 205 133 0 chr3 156474397 156474563 -71050015 - Charlie4a DNA MER1_type -115 393 206 1010 195 35 93 chr3 156474692 156474915 -71049663 + L1ME1 LINE L1 5839 6037 -129 1870 158 0 26 chr3 156474915 156475226 -71049352 - AluJo SINE Alu -9 303 1 1010 195 35 93 chr3 156475226 156475346 -71049232 + L1ME1 LINE L1 6037 6162 -4 1966 148 14 3 chr3 156475885 156476176 -71048402 + AluSx SINE Alu 1 294 -18 385 42 0 21 chr3 156476418 156476466 -71048112 - THE1A LTR MaLR 0 355 309 30 59 0 0 chr3 156476726 156476777 -71047801 + GC_rich Low_complexity Low_complexity 1 51 0 204 222 16 16 chr3 156476833 156476896 -71047682 + (CCG)n Simple_repeat Simple_repeat 2 64 0 2179 96 10 3 chr3 156478757 156479048 -71045530 + AluSx SINE Alu 1 293 -19 595 203 209 6 chr3 156479458 156479616 -71044962 + MIR SINE MIR 7 196 -66 25 31 0 0 chr3 156479617 156479649 -71044929 + AT_rich Low_complexity Low_complexity 1 32 0 26 50 0 0 chr3 156479804 156479844 -71044734 + AT_rich Low_complexity Low_complexity 1 40 0 710 169 15 0 chr3 156480046 156480176 -71044402 - FRAM SINE Alu -2 174 43 1933 103 33 0 chr3 156480566 156480838 -71043740 - AluSp SINE Alu -32 281 1 1816 190 215 53 chr3 156480936 156481145 -71043433 + LTR48 LTR ERV1 1 175 -478 2191 135 0 0 chr3 156481145 156481457 -71043121 + AluSx SINE Alu 1 312 0 1816 190 215 53 chr3 156481457 156481853 -71042725 + LTR48 LTR ERV1 175 596 -57 1601 155 35 45 chr3 156481853 156482143 -71042435 - AluJo SINE Alu -25 287 1 1816 190 215 53 chr3 156482143 156482213 -71042365 + LTR48 LTR ERV1 596 653 0 2293 93 3 23 chr3 156482772 156483082 -71041496 + AluSx SINE Alu 1 304 -8 508 128 0 23 chr3 156483439 156483525 -71041053 - AluS SINE Alu 0 312 229 1905 120 52 62 chr3 156483651 156483850 -71040728 - THE1B LTR MaLR 0 364 169 2539 67 0 13 chr3 156483850 156484162 -71040416 - AluY SINE Alu -3 308 1 1905 120 52 62 chr3 156484162 156484330 -71040248 - THE1B LTR MaLR -195 169 1 10243 82 47 61 chr3 156484330 156485932 -71038646 - THE1B-int LTR MaLR 0 1580 1 2327 118 36 20 chr3 156485932 156486289 -71038289 - THE1B LTR MaLR 0 364 2 232 301 84 12 chr3 156486334 156486417 -71038161 + HAL1 LINE L1 1812 1900 -607 1504 107 0 0 chr3 156486547 156486743 -71037835 - AluSq SINE Alu -10 303 108 1646 173 24 17 chr3 156486766 156487061 -71037517 - AluJb SINE Alu -15 297 1 2067 135 10 0 chr3 156487416 156487712 -71036866 + AluSx SINE Alu 7 305 -7 236 256 223 0 chr3 156487784 156487905 -71036673 + HAL1 LINE L1 2251 2398 -109 2194 123 0 3 chr3 156488111 156488411 -71036167 + AluSx SINE Alu 1 299 -13 1916 146 10 14 chr3 156488685 156488979 -71035599 + AluSx SINE Alu 1 293 -19 558 222 53 6 chr3 156488980 156489151 -71035427 + L1ME4a LINE L1 5943 6121 0 740 223 171 60 chr3 156489153 156489404 -71035174 + AluSg1 SINE Alu 1 279 -30 2069 130 0 10 chr3 156489416 156489702 -71034876 + AluSx SINE Alu 1 301 -11 190 0 0 0 chr3 156489702 156489723 -71034855 + (TAA)n Simple_repeat Simple_repeat 2 180 0 2069 130 0 10 chr3 156489723 156489735 -71034843 + AluSx SINE Alu 301 312 0 1114 79 7 33 chr3 156489943 156490244 -71034334 + AluSg SINE Alu 1 297 0 1752 167 30 0 chr3 156490263 156490533 -71034045 + AluJo SINE Alu 7 284 -28 461 257 72 13 chr3 156490845 156490997 -71033581 - L2 LINE L2 -1 3312 3152 195 316 37 9 chr3 156491177 156491309 -71033269 - L2 LINE L2 -330 2983 2849 2029 274 82 16 chr3 156491385 156491946 -71032632 + MER115 DNA AcHobo 96 693 0 366 280 77 44 chr3 156491964 156492146 -71032432 - L2 LINE L2 -532 2782 2595 209 260 91 26 chr3 156492188 156492265 -71032313 - L2 LINE L2 -853 2461 2380 192 77 0 0 chr3 156492268 156492294 -71032284 + (TTTTC)n Simple_repeat Simple_repeat 4 29 0 2268 93 3 16 chr3 156493346 156493656 -71030922 + AluSg SINE Alu 1 306 -4 2001 139 24 7 chr3 156493666 156493961 -71030617 + AluSq SINE Alu 1 300 -13 2245 96 3 13 chr3 156494399 156494700 -71029878 - AluSx SINE Alu -14 298 1 477 272 32 57 chr3 156494706 156494864 -71029714 - LTR16A LTR ERVL -296 154 1 1843 171 0 0 chr3 156495196 156495495 -71029083 + AluJo SINE Alu 1 299 -13 2043 140 0 22 chr3 156495563 156495878 -71028700 + AluSx SINE Alu 1 308 -4 2620 43 0 0 chr3 156496579 156496878 -71027700 - AluY SINE Alu -12 299 1 292 372 18 0 chr3 156497021 156497134 -71027444 - MLT1K LTR MaLR -235 353 239 850 229 76 69 chr3 156497374 156497649 -71026929 + LTR16A1 LTR ERVL 181 457 0 1868 136 10 27 chr3 156498037 156498338 -71026240 - AluSx SINE Alu 0 312 17 1934 143 0 37 chr3 156498351 156498673 -71025905 - AluSx SINE Alu -2 310 1 366 23 0 0 chr3 156498836 156498879 -71025699 + (TG)n Simple_repeat Simple_repeat 1 43 0 1034 173 53 81 chr3 156500079 156500212 -71024366 + ORSL DNA AcHobo 1 136 -139 511 84 60 0 chr3 156500212 156500295 -71024283 - L1MB3 LINE L1 0 6183 6096 1034 173 53 81 chr3 156500295 156500444 -71024134 + ORSL DNA AcHobo 136 275 0 923 152 0 0 chr3 156500941 156501073 -71023505 - FLAM_C SINE Alu -11 132 1 2193 111 3 0 chr3 156501085 156501374 -71023204 - AluSq SINE Alu -14 299 10 281 256 81 0 chr3 156501422 156501508 -71023070 + MIR3 SINE MIR 82 174 -34 907 281 58 21 chr3 156501612 156501694 -71022884 + MER102b DNA MER1_type 2 80 -1348 1997 81 4 40 chr3 156501694 156501967 -71022611 + AluY SINE Alu 17 279 -32 339 25 0 0 chr3 156501967 156502007 -71022571 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 907 281 58 21 chr3 156502007 156502251 -71022327 + MER102b DNA MER1_type 79 341 0 570 90 169 0 chr3 156502763 156502852 -71021726 + AluYb8 SINE Alu 2 105 -213 357 207 0 0 chr3 156502852 156502934 -71021644 + A-rich Low_complexity Low_complexity 1 82 0 313 316 59 38 chr3 156503284 156503659 -71020919 + L2 LINE L2 2672 3059 -213 2142 85 3 88 chr3 156503966 156504294 -71020284 + AluSx SINE Alu 1 300 -12 1724 82 77 4 chr3 156504418 156504651 -71019927 - AluY SINE Alu -25 286 37 22 0 0 0 chr3 156505628 156505650 -71018928 + AT_rich Low_complexity Low_complexity 1 22 0 979 122 0 0 chr3 156505782 156505913 -71018665 - AluSq/x SINE Alu -180 133 3 1020 179 0 52 chr3 156505915 156506127 -71018451 - L1MB1 LINE L1 -33 6135 5935 10153 177 15 51 chr3 156506150 156506495 -71018083 - L1MA2 LINE L1 0 6304 5948 2265 99 0 23 chr3 156506495 156506797 -71017781 - AluSq SINE Alu -17 296 2 10153 177 15 51 chr3 156506797 156507762 -71016816 - L1MA2 LINE L1 -356 5948 4950 2140 79 0 62 chr3 156507762 156508067 -71016511 - AluSg SINE Alu -4 306 21 10153 177 15 51 chr3 156508067 156508944 -71015634 - L1MA2 LINE L1 -1354 4950 4043 2268 77 0 16 chr3 156508944 156509255 -71015323 - L1PA6 LINE L1 -13 6141 5836 10153 177 15 51 chr3 156509255 156509424 -71015154 - L1MA2 LINE L1 -2261 4043 3869 1980 143 3 7 chr3 156509424 156509724 -71014854 - AluSx SINE Alu -13 299 1 10153 177 15 51 chr3 156509724 156510202 -71014376 - L1MA2 LINE L1 -2435 3869 3599 2223 90 0 10 chr3 156510202 156510512 -71014066 - AluY SINE Alu 0 311 8 10153 177 15 51 chr3 156510512 156510813 -71013765 - L1MA2 LINE L1 -2705 3599 3289 402 209 57 19 chr3 156510815 156510920 -71013658 - AluSg/x SINE Alu -2 308 200 2185 126 0 0 chr3 156511325 156511627 -71012951 - AluY SINE Alu -9 302 1 1959 137 11 0 chr3 156511635 156511919 -71012659 - AluSx SINE Alu -25 287 1 2312 96 3 29 chr3 156511921 156512234 -71012344 - AluSx SINE Alu -7 305 1 1808 156 21 3 chr3 156512248 156512531 -71012047 - AluJb SINE Alu -22 290 3 860 252 0 11 chr3 156512914 156513122 -71011456 - MLT1A2 LTR MaLR 0 374 184 647 219 72 8 chr3 156513223 156513404 -71011174 - MLT1B LTR MaLR -187 187 1 672 279 160 8 chr3 156513404 156513648 -71010930 - HERV16 LTR ERVL -4715 281 1 584 249 13 15 chr3 156513648 156513877 -71010701 - LTR16A LTR ERVL 0 450 191 180 0 0 0 chr3 156513910 156513930 -71010648 + (TG)n Simple_repeat Simple_repeat 1 20 0 1528 184 37 0 chr3 156513944 156514216 -71010362 - AluJo SINE Alu -30 282 1 428 286 93 7 chr3 156514218 156514358 -71010220 - LTR16A LTR ERVL -243 207 56 1734 148 17 34 chr3 156514389 156514686 -71009892 + AluJb SINE Alu 7 298 -14 924 198 59 59 chr3 156514788 156515076 -71009502 + L1ME2 LINE L1 5742 6029 -137 270 203 27 14 chr3 156515531 156515605 -71008973 - AluS SINE Alu -226 76 2 1334 195 86 0 chr3 156515643 156515899 -71008679 + AluJo SINE Alu 6 283 -29 1989 77 63 25 chr3 156516082 156516367 -71008211 + AluY SINE Alu 1 296 -15 2355 94 0 3 chr3 156516480 156516778 -71007800 - AluSc SINE Alu -12 297 1 936 259 20 16 chr3 156516965 156517220 -71007358 + MIR SINE MIR 2 257 -5 22 0 0 0 chr3 156517508 156517530 -71007048 + AT_rich Low_complexity Low_complexity 1 22 0 706 118 16 79 chr3 156518634 156518761 -71005817 + AluSg/x SINE Alu 169 287 -23 872 200 29 41 chr3 156518788 156518877 -71005701 + Charlie2 DNA MER1_type 2621 2710 -152 2518 27 10 7 chr3 156518877 156519173 -71005405 - AluY SINE Alu -14 297 1 872 200 29 41 chr3 156519173 156519328 -71005250 + Charlie2 DNA MER1_type 2710 2862 0 2003 163 3 0 chr3 156519364 156519671 -71004907 - AluJb SINE Alu -4 308 1 2023 110 0 4 chr3 156520068 156520363 -71004215 - AluSx SINE Alu 0 306 13 568 212 9 9 chr3 156520394 156520507 -71004071 + MER81 DNA DNA 2 114 0 21 0 0 0 chr3 156520939 156520960 -71003618 + GC_rich Low_complexity Low_complexity 1 21 0 30 27 0 0 chr3 156520987 156521024 -71003554 + GC_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr3 156521074 156521095 -71003483 + GC_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 156521224 156521247 -71003331 + GC_rich Low_complexity Low_complexity 1 23 0 1226 179 38 38 chr3 156521427 156521690 -71002888 + L1PB4 LINE L1 5855 6117 -39 2185 97 19 13 chr3 156521690 156521998 -71002580 + AluSx SINE Alu 3 312 0 568 212 9 9 chr3 156522853 156522966 -71001612 - MER81 DNA DNA 0 114 2 2156 98 0 4 chr3 156522994 156523291 -71001287 + AluSx SINE Alu 11 306 0 947 174 19 0 chr3 156523687 156523848 -71000730 + AluJo SINE Alu 1 164 -148 3363 128 29 18 chr3 156523950 156524540 -71000038 + L1PA16 LINE L1 5231 5827 -339 1368 177 16 4 chr3 156524542 156524785 -70999793 + AluSx SINE Alu 39 284 -28 1685 155 98 7 chr3 156525556 156525853 -70998725 + MSTB LTR MaLR 1 324 -102 493 125 0 38 chr3 156525860 156525940 -70998638 + L1PA15-16 LINE L1 1536 1612 -5237 4549 118 6 5 chr3 156525940 156526609 -70997969 + L1PA16 LINE L1 5497 6166 0 253 127 0 18 chr3 156526637 156526692 -70997886 + L1MA3 LINE L1 6130 6183 -122 542 124 0 0 chr3 156526837 156526926 -70997652 - AluS SINE Alu 0 312 224 4953 21 0 3 chr3 156527068 156527636 -70996942 + L1HS LINE L1 5589 6154 -1 2736 145 92 12 chr3 156527655 156528157 -70996421 + L1MC/D LINE L1 5254 5795 -564 458 158 53 3 chr3 156528157 156528245 -70996333 + MLT1D LTR MaLR 300 507 -101 3279 193 129 35 chr3 156528252 156528562 -70996016 - L1MC4a LINE L1 -4 7804 7525 2432 88 0 0 chr3 156528562 156528858 -70995720 - AluSc SINE Alu -13 296 1 3279 193 129 35 chr3 156528858 156529438 -70995140 - L1MC4a LINE L1 -283 7525 6830 1382 187 0 15 chr3 156529448 156529710 -70994868 - L1MD3 LINE L1 0 7995 7738 528 170 66 0 chr3 156529724 156529830 -70994748 - L1MC4a LINE L1 -964 6844 6732 495 231 46 23 chr3 156529840 156529970 -70994608 + MER5B DNA MER1_type 44 176 -2 409 287 70 25 chr3 156530560 156530717 -70993861 + MIR SINE MIR 20 183 -79 2526 75 7 0 chr3 156530884 156531190 -70993388 + AluSc SINE Alu 1 308 -1 299 268 164 27 chr3 156531365 156531585 -70992993 - MIR SINE MIR 0 262 13 276 91 0 0 chr3 156532377 156532421 -70992157 + (GA)n Simple_repeat Simple_repeat 2 45 0 332 273 42 42 chr3 156533714 156533857 -70990721 + L1MC4a LINE L1 5930 6072 -1736 297 291 148 106 chr3 156534118 156534355 -70990223 - L2 LINE L2 0 3272 3026 396 301 63 68 chr3 156534413 156535001 -70989577 - L2 LINE L2 -407 2907 2323 513 242 121 18 chr3 156535058 156535223 -70989355 + MIR SINE MIR 72 253 -9 304 321 38 46 chr3 156535489 156535732 -70988846 - MIR SINE MIR -4 258 14 484 163 81 0 chr3 156536779 156536865 -70987713 + MER96 DNA MER1_type? 1 93 -82 2213 80 3 13 chr3 156537130 156537432 -70987146 - AluSp SINE Alu -14 299 1 214 330 179 0 chr3 156538205 156538429 -70986149 - L3 LINE CR1 -1116 461 198 2216 188 41 9 chr3 156539297 156539739 -70984839 + MER65C LTR ERV1 1 456 -5 657 199 96 0 chr3 156539817 156539973 -70984605 - Charlie8 DNA MER1_type -2204 213 43 182 227 11 114 chr3 156540128 156540216 -70984362 + L3 LINE CR1 1324 1402 -175 201 339 0 0 chr3 156540639 156540698 -70983880 + MIR SINE MIR 29 87 -121 24 77 0 0 chr3 156541442 156541494 -70983084 + AT_rich Low_complexity Low_complexity 1 52 0 32 26 0 0 chr3 156541803 156541842 -70982736 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr3 156542469 156542497 -70982081 + AT_rich Low_complexity Low_complexity 1 28 0 497 252 144 27 chr3 156543143 156543354 -70981224 - MIR SINE MIR -2 260 34 719 293 52 21 chr3 156543568 156543858 -70980720 - MER102a DNA MER1_type -1 329 31 189 356 67 44 chr3 156544860 156544995 -70979583 + MIR3 SINE MIR 5 142 -66 436 248 35 35 chr3 156546310 156546451 -70978127 + L2 LINE L2 3168 3308 -5 2389 95 0 3 chr3 156546915 156547220 -70977358 + AluSc SINE Alu 1 304 -5 296 350 80 22 chr3 156547516 156547653 -70976925 + L2 LINE L2 3076 3220 -52 260 300 70 57 chr3 156547800 156548030 -70976548 + L2 LINE L2 2188 2420 -894 2042 267 82 62 chr3 156548054 156549048 -70975530 + L1MB5 LINE L1 1 1014 -5528 4746 207 135 27 chr3 156549050 156549195 -70975383 + L1MB5 LINE L1 1849 1977 -4667 2179 94 7 3 chr3 156549195 156549483 -70975095 + AluSg SINE Alu 1 289 -21 4746 207 135 27 chr3 156549483 156549905 -70974673 + L1MB5 LINE L1 1977 2352 -4292 1945 140 0 37 chr3 156549905 156550226 -70974352 + AluSx SINE Alu 3 311 -1 4746 207 135 27 chr3 156550226 156550488 -70974090 + L1MB5 LINE L1 2352 2584 -4060 2177 110 7 0 chr3 156550488 156550780 -70973798 + AluSx SINE Alu 1 294 -18 4746 207 135 27 chr3 156550780 156551170 -70973408 + L1MB5 LINE L1 2584 2930 -3714 1851 149 0 56 chr3 156551170 156551493 -70973085 + AluJo SINE Alu 1 305 -7 4746 207 135 27 chr3 156551493 156552433 -70972145 + L1MB5 LINE L1 2930 4244 -2400 3070 182 91 2 chr3 156552434 156553028 -70971550 + MER82 DNA MER2_type 1 647 -6 6340 181 80 20 chr3 156553034 156554992 -70969586 + L1MB5 LINE L1 4244 6360 -312 2424 89 0 0 chr3 156554992 156555294 -70969284 + AluSx SINE Alu 1 302 -10 6340 181 80 20 chr3 156555294 156555627 -70968951 + L1MB5 LINE L1 6360 6672 0 217 254 52 68 chr3 156555752 156555925 -70968653 + L2 LINE L2 2630 3272 0 1661 126 8 0 chr3 156556133 156556372 -70968206 + AluSx SINE Alu 1 241 -71 226 114 29 0 chr3 156556373 156556408 -70968170 - MLT1A1 LTR MaLR -329 36 1 231 282 66 0 chr3 156556545 156556615 -70967963 + MIR SINE MIR 42 115 -93 1141 77 33 82 chr3 156556653 156556747 -70967831 + L1PA14 LINE L1 5989 6071 -90 2283 109 0 0 chr3 156556747 156557049 -70967529 + AluSx SINE Alu 1 302 -10 1141 77 33 82 chr3 156557049 156557136 -70967442 + L1PA14 LINE L1 6071 6161 0 1078 182 62 83 chr3 156557332 156557426 -70967152 - Charlie2 DNA MER1_type -245 2617 2523 2229 108 0 3 chr3 156557426 156557721 -70966857 - AluSg SINE Alu -16 294 1 1078 182 62 83 chr3 156557721 156557850 -70966728 - Charlie2 DNA MER1_type -339 2523 2393 2424 72 0 0 chr3 156557850 156558167 -70966411 - AluY SINE Alu 0 317 1 1078 182 62 83 chr3 156558167 156558557 -70966021 - Charlie2 DNA MER1_type -469 2393 1857 366 83 42 0 chr3 156558588 156558660 -70965918 + (CA)n Simple_repeat Simple_repeat 2 76 0 564 295 30 60 chr3 156558679 156558847 -70965731 - Charlie2 DNA MER1_type -2522 260 101 1908 139 33 10 chr3 156558847 156559149 -70965429 - AluSx SINE Alu -3 309 1 564 295 30 60 chr3 156559149 156559248 -70965330 - Charlie2 DNA MER1_type -2681 101 1 878 323 41 64 chr3 156559766 156560083 -70964495 - L2 LINE L2 -606 2708 2385 2605 126 67 12 chr3 156560083 156560489 -70964089 + MSTA LTR MaLR 1 428 0 878 323 41 64 chr3 156560489 156560886 -70963692 - L2 LINE L2 -929 2385 2011 2185 106 0 10 chr3 156560927 156561228 -70963350 - AluSx SINE Alu -14 298 1 2364 102 0 0 chr3 156561230 156561534 -70963044 - AluSg SINE Alu -5 305 2 397 321 31 16 chr3 156561562 156561755 -70962823 + L2 LINE L2 1698 1893 -1421 1308 253 83 34 chr3 156561797 156562205 -70962373 - LTR16C LTR ERVL -63 428 1 225 119 0 0 chr3 156562912 156562954 -70961624 + (TG)n Simple_repeat Simple_repeat 1 42 0 261 57 0 0 chr3 156562954 156562989 -70961589 + (GA)n Simple_repeat Simple_repeat 2 36 0 311 228 13 25 chr3 156563163 156563242 -70961336 - HAL1 LINE L1 -1659 848 771 * 1284 222 98 66 chr3 156563240 156563813 -70960765 - HAL1 LINE L1 -994 1513 923 842 208 43 100 chr3 156563821 156564052 -70960526 - AluJo SINE Alu -92 220 3 1904 120 3 11 chr3 156564337 156564620 -70959958 + MER31A LTR ERV1 1 281 -204 2183 119 10 6 chr3 156564624 156564935 -70959643 - AluSx SINE Alu 0 312 1 647 250 31 46 chr3 156564968 156565169 -70959409 - MIR3 SINE MIR -2 206 6 36 23 0 0 chr3 156565686 156565729 -70958849 + AT_rich Low_complexity Low_complexity 1 43 0 548 285 57 5 chr3 156566103 156566296 -70958282 + MLT1K LTR MaLR 340 542 -46 1508 154 37 11 chr3 156566329 156566601 -70957977 + AluSx SINE Alu 14 292 -20 1773 177 0 20 chr3 156567412 156567712 -70956866 - AluJo SINE Alu -18 294 1 393 57 0 0 chr3 156567723 156567776 -70956802 - L1MB4 LINE L1 0 6180 6128 2026 133 7 0 chr3 156567869 156568162 -70956416 - AluSg SINE Alu -15 295 1 2264 107 7 0 chr3 156568334 156568634 -70955944 - AluSq SINE Alu -6 307 6 2451 76 0 13 chr3 156569255 156569569 -70955009 - AluY SINE Alu -1 310 1 204 40 0 0 chr3 156569950 156569975 -70954603 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 699 144 0 10 chr3 156569975 156570079 -70954499 - AluSg/x SINE Alu -32 280 178 1869 134 58 3 chr3 156570114 156570405 -70954173 + AluSx SINE Alu 5 311 -1 531 155 13 18 chr3 156570473 156570488 -70954090 - LTR54 LTR ERV1 -7 495 481 2202 122 0 0 chr3 156570488 156570782 -70953796 + AluSx SINE Alu 1 294 -18 531 155 13 18 chr3 156570782 156570877 -70953701 - LTR54 LTR ERV1 -21 481 385 4394 151 10 103 chr3 156570878 156571395 -70953183 - L1MB3 LINE L1 -40 6143 5580 1900 151 33 10 chr3 156571395 156571700 -70952878 + AluSx SINE Alu 1 312 0 4394 151 10 103 chr3 156571700 156571782 -70952796 - L1MB3 LINE L1 -603 5580 5492 2631 126 96 5 chr3 156571782 156572180 -70952398 - MER61C LTR ERV1 0 434 1 4394 151 10 103 chr3 156572180 156572395 -70952183 - L1MB3 LINE L1 -691 5492 5259 2257 100 3 0 chr3 156572395 156572695 -70951883 - AluY SINE Alu -10 301 1 2340 106 0 0 chr3 156572698 156572999 -70951579 - AluSx SINE Alu -11 301 1 4394 151 10 103 chr3 156572999 156573062 -70951516 - L1MB3 LINE L1 -926 5257 5190 1811 146 34 17 chr3 156573062 156573357 -70951221 - AluJo SINE Alu -12 300 1 4394 151 10 103 chr3 156573357 156573638 -70950940 - L1MB3 LINE L1 -993 5190 5063 2326 105 3 6 chr3 156573638 156573952 -70950626 - AluSq SINE Alu 0 313 1 4394 151 10 103 chr3 156573952 156574020 -70950558 - L1MB3 LINE L1 -1120 5063 4990 1201 143 5 0 chr3 156574022 156574211 -70950367 - Tigger2 DNA MER2_type -51 2667 2478 432 131 0 0 chr3 156574211 156574272 -70950306 - AluS SINE Alu -256 62 2 2049 118 10 80 chr3 156574273 156574371 -70950207 - Tigger2 DNA MER2_type -2356 362 259 2159 103 28 0 chr3 156574371 156574661 -70949917 - AluSg SINE Alu -12 298 1 2049 118 10 80 chr3 156574661 156574681 -70949897 - Tigger2 DNA MER2_type -2459 259 239 2181 93 43 0 chr3 156574681 156574961 -70949617 - AluSg SINE Alu -18 292 1 2049 118 10 80 chr3 156574961 156575230 -70949348 - Tigger2 DNA MER2_type -2479 239 1 2162 131 3 6 chr3 156575486 156575799 -70948779 - AluSx SINE Alu 0 312 1 2237 95 3 16 chr3 156576050 156576218 -70948360 - AluSp SINE Alu -13 300 136 2362 77 0 7 chr3 156576218 156576515 -70948063 - AluY SINE Alu -16 295 1 2237 95 3 16 chr3 156576515 156576650 -70947928 - AluSp SINE Alu -177 136 1 563 284 100 57 chr3 156576701 156577000 -70947578 + MLT1K LTR MaLR 261 572 -16 765 243 147 4 chr3 156578249 156578638 -70945940 - LTR33 LTR ERVL -41 480 3 225 212 15 15 chr3 156581248 156581314 -70943264 - HAL1b LINE L1 0 1348 1283 282 261 70 0 chr3 156581434 156581549 -70943029 - L1ME LINE L1 -297 5824 5702 * 1076 153 0 138 chr3 156581540 156581593 -70942985 - L1MB1 LINE L1 -3 6165 6106 1830 124 59 0 chr3 156581593 156581866 -70942712 - AluSx SINE Alu -21 291 3 1076 153 0 138 chr3 156581866 156582080 -70942498 - L1MB1 LINE L1 -62 6106 5935 15444 136 21 60 chr3 156582103 156582448 -70942130 - L1MA2 LINE L1 0 7723 7366 2245 99 0 23 chr3 156582448 156582750 -70941828 - AluSq SINE Alu -17 296 2 15444 136 21 60 chr3 156582750 156583715 -70940863 - L1MA2 LINE L1 -357 7366 6365 2125 79 0 62 chr3 156583715 156584020 -70940558 - AluSg SINE Alu -4 306 21 15444 136 21 60 chr3 156584020 156584897 -70939681 - L1MA2 LINE L1 -1358 6365 5456 2393 77 0 16 chr3 156584897 156585208 -70939370 - L1PA6 LINE L1 -13 6141 5836 15444 136 21 60 chr3 156585208 156585378 -70939200 - L1MA2 LINE L1 -2267 5456 5281 1958 143 3 7 chr3 156585378 156585678 -70938900 - AluSx SINE Alu -13 299 1 15444 136 21 60 chr3 156585678 156586156 -70938422 - L1MA2 LINE L1 -2442 5281 4786 2204 90 0 10 chr3 156586156 156586466 -70938112 - AluY SINE Alu 0 311 8 15444 136 21 60 chr3 156586466 156586769 -70937809 - L1MA2 LINE L1 -2937 4786 4473 1719 169 36 7 chr3 156586769 156587070 -70937508 - AluJb SINE Alu -2 310 1 15444 136 21 60 chr3 156587070 156587106 -70937472 - L1MA2 LINE L1 -3250 4473 4437 681 52 0 42 chr3 156587106 156587202 -70937376 - SVA Other Other 0 1386 1295 15444 136 21 60 chr3 156587202 156587350 -70937228 - L1MA2 LINE L1 -3286 4437 4285 1602 189 0 4 chr3 156587350 156587620 -70936958 - AluJo SINE Alu -13 299 31 15444 136 21 60 chr3 156587620 156587970 -70936608 - L1MA2 LINE L1 -3438 4285 3923 1941 133 31 3 chr3 156587970 156588263 -70936315 - AluSx SINE Alu -11 301 1 15444 136 21 60 chr3 156588263 156589365 -70935213 - L1MA2 LINE L1 -3800 3923 2780 2224 90 3 0 chr3 156589365 156589654 -70934924 - AluSg SINE Alu -18 292 3 15444 136 21 60 chr3 156589654 156590237 -70934341 - L1MA2 LINE L1 -4943 2780 2479 2323 94 10 13 chr3 156590237 156590412 -70934166 - AluSc SINE Alu -3 306 131 2437 81 0 3 chr3 156590412 156590719 -70933859 - AluY SINE Alu -5 306 1 2323 94 10 13 chr3 156590719 156590850 -70933728 - AluSc SINE Alu -178 131 1 15444 136 21 60 chr3 156590850 156591010 -70933568 - L1MA2 LINE L1 -5244 2479 2314 231 302 110 39 chr3 156591508 156591690 -70932888 - L2 LINE L2 0 3313 3119 582 282 40 0 chr3 156591842 156592016 -70932562 + MIR SINE MIR 32 212 -50 2407 72 0 3 chr3 156592157 156592450 -70932128 - AluY SINE Alu -19 292 1 346 273 53 33 chr3 156592646 156592796 -70931782 + L2 LINE L2 3161 3313 0 2473 70 0 3 chr3 156592923 156593225 -70931353 + AluY SINE Alu 1 301 -10 1727 151 123 0 chr3 156593226 156593558 -70931020 + L1MB5 LINE L1 5802 6174 0 203 296 63 59 chr3 156593610 156593856 -70930722 + L2 LINE L2 2551 3272 0 1660 126 8 0 chr3 156594064 156594303 -70930275 + AluSx SINE Alu 1 241 -71 270 226 88 186 chr3 156594476 156594584 -70929994 + MIR SINE MIR 42 112 -150 1054 77 33 82 chr3 156594584 156594678 -70929900 + L1PA14 LINE L1 5989 6071 -90 2283 109 0 0 chr3 156594678 156594980 -70929598 + AluSx SINE Alu 1 302 -10 1054 77 33 82 chr3 156594980 156595067 -70929511 + L1PA14 LINE L1 6071 6161 0 270 226 88 186 chr3 156595067 156595205 -70929373 + MIR SINE MIR 112 262 0 1938 135 7 10 chr3 156595256 156595553 -70929025 + AluSx SINE Alu 1 296 -16 493 370 142 14 chr3 156595888 156596394 -70928184 - L3 LINE CR1 -388 1189 619 384 234 69 69 chr3 156596534 156596679 -70927899 - MIR3 SINE MIR -15 193 49 21 0 0 0 chr3 156596720 156596741 -70927837 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3 156596767 156596799 -70927779 + AT_rich Low_complexity Low_complexity 1 32 0 2243 119 3 0 chr3 156597123 156597426 -70927152 - AluSx SINE Alu -8 304 1 218 268 205 36 chr3 156597532 156597644 -70926934 + L2 LINE L2 3183 3313 0 22 35 0 0 chr3 156598974 156599003 -70925575 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 156599376 156599397 -70925181 + AT_rich Low_complexity Low_complexity 1 21 0 735 220 0 0 chr3 156600032 156600164 -70924414 + FLAM_A SINE Alu 1 132 -1 216 0 0 0 chr3 156600378 156600402 -70924176 + (T)n Simple_repeat Simple_repeat 1 24 0 339 267 148 61 chr3 156601344 156601445 -70923133 + L1M4 LINE L1 2234 2325 -3821 2006 105 14 0 chr3 156601445 156601721 -70922857 + AluSx SINE Alu 1 280 -32 204 40 0 0 chr3 156601721 156601746 -70922832 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 339 267 148 61 chr3 156601746 156601992 -70922586 + L1M4 LINE L1 2325 2548 -3598 2172 113 0 3 chr3 156601992 156602294 -70922284 + AluSx SINE Alu 1 301 -11 339 267 148 61 chr3 156602294 156602685 -70921893 + L1M4 LINE L1 2548 3039 -3107 2269 73 0 3 chr3 156602689 156602998 -70921580 + AluY SINE Alu 1 308 0 23 0 0 0 chr3 156602998 156603021 -70921557 + AT_rich Low_complexity Low_complexity 1 23 0 3407 152 87 13 chr3 156603080 156603791 -70920787 + L1MD1 LINE L1 5290 6053 -189 529 145 65 65 chr3 156603798 156603936 -70920642 + L1MD1 LINE L1 6103 6240 -2 374 313 91 17 chr3 156603946 156604122 -70920456 + L1MC/D LINE L1 5354 5542 -700 227 127 127 16 chr3 156604173 156604236 -70920342 - L1MC5 LINE L1 -54 7907 7838 805 73 121 0 chr3 156604379 156604503 -70920075 + MER85 DNA T2_type 1 139 0 333 204 93 0 chr3 156604536 156604644 -70919934 - Charlie4 DNA MER1_type -37 1924 1807 417 247 142 23 chr3 156604764 156604983 -70919595 - L1MC5 LINE L1 -391 7570 7326 249 270 0 0 chr3 156605161 156605235 -70919343 - L1MC4 LINE L1 -790 7252 7179 339 277 58 32 chr3 156605347 156605502 -70919076 - L1MC4a LINE L1 -1542 6266 6108 1964 78 3 21 chr3 156605668 156605988 -70918590 - AluY SINE Alu 0 317 3 21 0 0 0 chr3 156606025 156606046 -70918532 + AT_rich Low_complexity Low_complexity 1 21 0 279 157 0 0 chr3 156606110 156606161 -70918417 + (CA)n Simple_repeat Simple_repeat 2 52 0 1209 241 68 40 chr3 156606180 156606737 -70917841 - L1MC4a LINE L1 -1915 5893 5321 774 227 57 55 chr3 156606739 156607136 -70917442 + MER67B LTR ERV1 104 409 -252 2267 88 3 7 chr3 156607177 156607474 -70917104 + AluSc SINE Alu 1 296 -13 568 136 87 0 chr3 156607552 156607655 -70916923 + MER67A LTR ERV1 432 543 0 308 273 23 11 chr3 156607776 156607864 -70916714 + L1MDb LINE L1 748 836 -5573 682 214 42 6 chr3 156607866 156608034 -70916544 - HAL1 LINE L1 -737 1770 1597 548 100 90 10 chr3 156608045 156608145 -70916433 + L1MB3 LINE L1 6004 6111 -72 882 157 0 7 chr3 156608175 156608328 -70916250 - MLT1B LTR MaLR -238 152 1 321 197 45 0 chr3 156609710 156609776 -70914802 + Charlie1 DNA MER1_type 50 118 -2643 891 205 113 68 chr3 156609894 156610275 -70914303 - L1ME1 LINE L1 -4 6162 5765 329 259 50 65 chr3 156610284 156610423 -70914155 + HAL1 LINE L1 2042 2178 -329 1124 179 120 56 chr3 156610450 156610473 -70914105 + MER2 DNA MER2_type 1 21 -324 1487 93 70 0 chr3 156610473 156610687 -70913891 + MER30 DNA MER1_type 1 229 -1 1124 179 120 56 chr3 156610687 156610987 -70913591 + MER2 DNA MER2_type 21 345 0 1238 94 144 5 chr3 156611918 156612120 -70912458 + MER30 DNA MER1_type 1 230 0 376 300 54 23 chr3 156612338 156612468 -70912110 + MIR3 SINE MIR 47 180 -28 767 117 78 0 chr3 156612750 156612878 -70911700 + MSTB1 LTR MaLR 20 157 -275 768 151 144 93 chr3 156613054 156613235 -70911343 + MSTA LTR MaLR 1 171 -193 2284 111 0 0 chr3 156613235 156613541 -70911037 + AluSx SINE Alu 1 306 -6 768 151 144 93 chr3 156613541 156613694 -70910884 + MSTA LTR MaLR 171 364 0 2217 148 56 10 chr3 156614094 156614506 -70910072 - MSTB1 LTR MaLR -1 431 1 6179 167 102 48 chr3 156614762 156615302 -70909276 + L1M4c LINE L1 19 528 -5856 2278 51 29 0 chr3 156615302 156615618 -70908960 + AluY SINE Alu 1 324 0 6179 167 102 48 chr3 156615618 156615694 -70908884 + L1M4c LINE L1 528 598 -5786 1703 169 53 0 chr3 156615694 156615978 -70908600 + AluJo SINE Alu 1 299 -13 6179 167 102 48 chr3 156615978 156616304 -70908274 + L1M4c LINE L1 598 905 -5479 1456 202 19 50 chr3 156616304 156616621 -70907957 + AluJo SINE Alu 1 307 -5 6179 167 102 48 chr3 156616621 156616881 -70907697 + L1M4c LINE L1 905 1149 -5235 1680 102 0 4 chr3 156616881 156617106 -70907472 + AluSg/x SINE Alu 84 307 -5 6179 167 102 48 chr3 156617106 156617526 -70907052 + L1M4c LINE L1 1149 1733 -4651 5145 144 52 6 chr3 156617528 156618613 -70905965 + L1MA7 LINE L1 5151 6286 -5 2014 183 76 42 chr3 156618635 156619724 -70904854 + L1M4c LINE L1 1719 2949 -3433 912 207 61 29 chr3 156620064 156620410 -70904168 - MSTD LTR MaLR 0 396 1 316 273 76 30 chr3 156620480 156620612 -70903966 + MLT1J LTR MaLR 5 142 -369 21 71 0 0 chr3 156620943 156620985 -70903593 + AT_rich Low_complexity Low_complexity 1 42 0 11763 165 35 111 chr3 156621500 156622853 -70901725 + L1MA4A LINE L1 2 1455 -5394 856 108 0 0 chr3 156622853 156622964 -70901614 + FLAM_C SINE Alu 1 111 -32 11763 165 35 111 chr3 156622964 156623338 -70901240 + L1MA4A LINE L1 1455 1856 -4993 1849 177 3 3 chr3 156623338 156623638 -70900940 + AluJo SINE Alu 1 300 -12 11763 165 35 111 chr3 156623638 156623710 -70900868 + L1MA4A LINE L1 1856 1932 -4917 625 186 73 8 chr3 156623710 156623834 -70900744 + AluSq/x SINE Alu 1 132 -180 11763 165 35 111 chr3 156623834 156623939 -70900639 + L1MA4A LINE L1 1932 2043 -4806 1772 149 3 52 chr3 156623939 156624267 -70900311 + AluSx SINE Alu 1 312 0 11763 165 35 111 chr3 156624267 156624815 -70899763 + L1MA4A LINE L1 2043 2425 -4424 2053 143 7 0 chr3 156624815 156625101 -70899477 + AluSx SINE Alu 1 288 -24 11763 165 35 111 chr3 156625101 156625536 -70899042 + L1MA4A LINE L1 2425 2891 -3958 2121 112 0 7 chr3 156625541 156625828 -70898750 + AluSq SINE Alu 1 285 -28 1875 226 7 4 chr3 156625886 156626346 -70898232 + L1MA4A LINE L1 2915 3375 -3473 1203 146 25 12 chr3 156626370 156626610 -70897968 - L1 LINE L1 -1816 4330 4088 8033 172 71 33 chr3 156626627 156626773 -70897805 + L1MA4A LINE L1 3385 3524 -3324 2052 146 10 0 chr3 156626773 156627082 -70897496 + AluSx SINE Alu 1 312 0 8033 172 71 33 chr3 156627082 156629031 -70895547 + L1MA4A LINE L1 3524 5559 -1289 248 68 45 0 chr3 156629054 156629098 -70895480 + L1MA4A LINE L1 5859 5904 -944 220 205 0 72 chr3 156629812 156629895 -70894683 + A-rich Low_complexity Low_complexity 2 78 0 2097 101 38 3 chr3 156630863 156631150 -70893428 - AluSx SINE Alu -11 301 5 5562 134 21 16 chr3 156631578 156631876 -70892702 + L1MA4A LINE L1 5890 6185 -820 2007 135 3 25 chr3 156631876 156632195 -70892383 + AluSx SINE Alu 1 312 0 5562 134 21 16 chr3 156632195 156632469 -70892109 + L1MA4A LINE L1 6185 6456 -549 1280 141 186 38 chr3 156632469 156632732 -70891846 + AluJo SINE Alu 1 302 0 5562 134 21 16 chr3 156632732 156633266 -70891312 + L1MA4A LINE L1 6456 7005 0 2131 138 3 0 chr3 156633403 156633714 -70890864 + AluSx SINE Alu 1 312 0 23 0 0 0 chr3 156633932 156633955 -70890623 + AT_rich Low_complexity Low_complexity 1 23 0 260 122 0 0 chr3 156633994 156634035 -70890543 - L1ME3 LINE L1 -216 5946 5906 2161 98 3 11 chr3 156634093 156634402 -70890176 + AluSp SINE Alu 2 308 0 311 335 19 33 chr3 156634570 156634785 -70889793 + MERVL LTR ERVL 4362 4573 -912 629 322 105 13 chr3 156634864 156635237 -70889341 + MERVL LTR ERVL 4716 5122 -642 1557 101 65 1 chr3 156635584 156635968 -70888610 + L1PB1 LINE L1 5105 5510 -641 2234 79 94 15 chr3 156635972 156636087 -70888491 + L1PB1 LINE L1 5584 5688 -463 288 0 0 0 chr3 156636087 156636119 -70888459 + (CA)n Simple_repeat Simple_repeat 2 33 0 2234 79 94 15 chr3 156636119 156636446 -70888132 + L1PB1 LINE L1 5688 6147 -4 928 194 144 96 chr3 156636504 156636859 -70887719 - MLT1D LTR MaLR 0 505 134 4008 169 52 43 chr3 156636866 156637047 -70887531 + L1MB3 LINE L1 5109 5287 -896 210 37 0 0 chr3 156637047 156637074 -70887504 + (CAA)n Simple_repeat Simple_repeat 1 27 0 1753 196 7 3 chr3 156637079 156637380 -70887198 + AluJo SINE Alu 1 302 -10 4008 169 52 43 chr3 156637380 156637829 -70886749 + L1MB3 LINE L1 5290 5752 -431 2127 102 3 7 chr3 156637829 156638114 -70886464 + AluSq SINE Alu 1 284 -29 4008 169 52 43 chr3 156638114 156638542 -70886036 + L1MB3 LINE L1 5752 6175 -8 597 210 28 7 chr3 156638550 156638716 -70885862 + L1MB8 LINE L1 5679 5849 -319 3913 129 66 79 chr3 156638716 156639703 -70884875 + pTR5 LTR ERV1 760 2025 -413 361 174 41 31 chr3 156639703 156639801 -70884777 + LTR30 LTR ERV1 544 642 -80 1377 112 49 0 chr3 156639802 156640025 -70884553 + LTR12 LTR ERV1 480 713 -1 1528 162 19 77 chr3 156640025 156640073 -70884505 + L1MB8 LINE L1 5826 5875 -303 1647 149 12 84 chr3 156640073 156640408 -70884170 + AluJb SINE Alu 2 312 0 1528 162 19 77 chr3 156640408 156640616 -70883962 + L1MB8 LINE L1 5875 6057 -121 1806 96 0 4 chr3 156640616 156640856 -70883722 + AluSc SINE Alu 55 293 -16 1528 162 19 77 chr3 156640856 156640962 -70883616 + L1MB8 LINE L1 6057 6168 -10 2345 100 0 3 chr3 156641021 156641332 -70883246 + AluSg SINE Alu 1 310 0 467 215 278 14 chr3 156641390 156641534 -70883044 + MIR SINE MIR 52 233 -29 885 253 0 0 chr3 156641932 156642102 -70882476 + FAM SINE Alu 1 170 -5 2362 103 0 19 chr3 156642120 156642439 -70882139 + AluSq SINE Alu 1 313 0 1899 179 52 3 chr3 156642646 156642971 -70881607 - MER2 DNA MER2_type 0 344 4 264 246 78 78 chr3 156643515 156643660 -70880918 - MIR SINE MIR -10 252 105 1198 197 176 8 chr3 156643660 156643904 -70880674 + AluSg SINE Alu 2 286 -14 264 246 78 78 chr3 156643904 156643937 -70880641 - MIR SINE MIR -156 106 74 388 210 155 75 chr3 156643958 156644158 -70880420 - L1MC5 LINE L1 -35 7926 7711 2248 117 0 0 chr3 156644246 156644545 -70880033 + AluSx SINE Alu 4 302 -10 1614 151 83 0 chr3 156644548 156644826 -70879752 + AluSx SINE Alu 4 304 -8 427 343 137 30 chr3 156645575 156646013 -70878565 - L2 LINE L2 -9 3304 2820 1938 121 10 10 chr3 156646043 156646332 -70878246 + AluSx SINE Alu 1 289 -23 744 214 34 17 chr3 156646380 156646558 -70878020 + MLT1J2 LTR MaLR 1 181 -269 387 0 0 0 chr3 156646673 156646716 -70877862 + (CA)n Simple_repeat Simple_repeat 2 44 0 4599 150 50 19 chr3 156646865 156647743 -70876835 + L1MB2 LINE L1 5265 6169 -2 2223 101 3 7 chr3 156647747 156648044 -70876534 + AluSg SINE Alu 1 296 -14 512 239 54 143 chr3 156648044 156648354 -70876224 - L2 LINE L2 -684 2630 2357 1300 202 89 21 chr3 156648354 156648636 -70875942 + AluJo SINE Alu 1 301 -1 512 239 54 143 chr3 156648636 156648697 -70875881 - L2 LINE L2 -957 2357 2292 1129 171 58 133 chr3 156648699 156648963 -70875615 - MLT1B LTR MaLR -70 320 38 2422 70 0 3 chr3 156648963 156649261 -70875317 - AluY SINE Alu -14 297 1 3423 63 47 0 chr3 156649261 156649689 -70874889 - L1PA6 LINE L1 0 6154 5707 1129 171 58 133 chr3 156649689 156649769 -70874809 - MLT1B LTR MaLR -350 40 1 305 222 83 0 chr3 156649777 156649849 -70874729 + LTR50 LTR ERVL 714 791 -4 587 248 132 4 chr3 156649858 156650108 -70874470 - HAL1 LINE L1 -1126 1381 1100 450 186 101 31 chr3 156650136 156650265 -70874313 - HAL1 LINE L1 -1574 933 796 281 279 202 33 chr3 156650276 156650459 -70874119 - HAL1 LINE L1 -1816 691 478 1456 136 84 54 chr3 156650552 156650838 -70873740 - L1MB8 LINE L1 -6 6172 5873 2008 147 0 0 chr3 156650838 156651137 -70873441 - AluSx SINE Alu -13 299 1 1456 136 84 54 chr3 156651137 156651182 -70873396 - L1MB8 LINE L1 -305 5873 5831 1175 140 34 5 chr3 156651178 156651385 -70873193 - L1MB8 LINE L1 -263 5915 5703 * 1045 269 94 6 chr3 156651378 156651720 -70872858 - HAL1 LINE L1 -2135 372 1 * 1009 270 108 17 chr3 156651726 156652252 -70872326 - L1M4 LINE L1 -3092 3054 2481 289 333 59 33 chr3 156652233 156652425 -70872153 + L1ME3 LINE L1 5442 5658 -463 * 8718 23 4 0 chr3 156652761 156653795 -70870783 - L1P LINE L1 -2805 3341 2304 2733 13 0 0 chr3 156653793 156654095 -70870483 + L1P LINE L1 4060 4361 -1785 * 226 167 48 0 chr3 156654095 156654137 -70870441 + MLT1B LTR MaLR 347 390 0 947 256 125 41 chr3 156654139 156654674 -70869904 + HAL1 LINE L1 1279 1858 -649 1658 217 62 58 chr3 156654714 156654784 -70869794 + L1ME3 LINE L1 5627 5695 -467 2262 103 0 22 chr3 156654784 156655096 -70869482 + AluSx SINE Alu 1 305 -7 1658 217 62 58 chr3 156655096 156655311 -70869267 + L1ME3 LINE L1 5695 5908 -254 2275 148 61 3 chr3 156655311 156655655 -70868923 - THE1B LTR MaLR 0 364 1 12571 96 2 3 chr3 156655655 156657236 -70867342 - THE1B-int LTR MaLR 0 1580 1 2490 127 28 22 chr3 156657236 156657598 -70866980 - THE1B LTR MaLR 0 364 1 1658 217 62 58 chr3 156657598 156657812 -70866766 + L1ME3 LINE L1 5907 6131 -31 1683 160 10 20 chr3 156657847 156658147 -70866431 - AluJo SINE Alu -13 299 3 180 0 0 0 chr3 156658556 156658576 -70866002 + (T)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr3 156658760 156658781 -70865797 + AT_rich Low_complexity Low_complexity 1 21 0 2156 110 17 0 chr3 156658909 156659199 -70865379 - AluSx SINE Alu -17 295 1 198 0 0 0 chr3 156659213 156659235 -70865343 + (A)n Simple_repeat Simple_repeat 1 22 0 1958 155 13 0 chr3 156659694 156659998 -70864580 - AluSx SINE Alu -3 309 2 1999 135 0 7 chr3 156660011 156660308 -70864270 - AluSx SINE Alu -17 295 1 2113 132 0 0 chr3 156660636 156660931 -70863647 + AluSx SINE Alu 1 295 -17 2210 105 7 0 chr3 156661048 156661342 -70863236 + AluSq SINE Alu 1 296 -17 393 314 102 13 chr3 156661474 156661647 -70862931 + MIR3 SINE MIR 19 208 0 1259 200 134 36 chr3 156661718 156661993 -70862585 + AluJb SINE Alu 1 302 0 222 118 0 0 chr3 156662008 156662042 -70862536 + (CGGA)n Simple_repeat Simple_repeat 3 36 0 * 1066 109 6 6 chr3 156662041 156662215 -70862363 + (GAAA)n Simple_repeat Simple_repeat 3 176 0 2181 115 13 0 chr3 156662351 156662655 -70861923 + AluSx SINE Alu 1 308 -4 2242 116 6 0 chr3 156662657 156662968 -70861610 + AluSp SINE Alu 1 313 0 2136 104 12 58 chr3 156663879 156664008 -70860570 + AluSx SINE Alu 1 134 -178 2482 78 0 0 chr3 156664008 156664317 -70860261 + AluSg1 SINE Alu 1 309 0 2136 104 12 58 chr3 156664317 156664514 -70860064 + AluSx SINE Alu 134 312 0 822 146 7 35 chr3 156664564 156664708 -70859870 - FLAM_C SINE Alu -1 142 3 2176 115 3 10 chr3 156664743 156665057 -70859521 - AluSx SINE Alu 0 312 1 662 160 19 0 chr3 156665561 156665667 -70858911 - FLAM_C SINE Alu -33 110 3 2277 74 10 10 chr3 156665702 156666012 -70858566 - AluSg SINE Alu 0 310 1 2463 54 0 0 chr3 156666106 156666401 -70858177 - AluY SINE Alu -14 297 3 249 297 183 59 chr3 156668686 156668718 -70855860 + L2 LINE L2 2966 2993 -279 2234 59 39 7 chr3 156668718 156669004 -70855574 - AluSc SINE Alu -14 295 1 249 297 183 59 chr3 156669004 156669244 -70855334 + L2 LINE L2 2993 3272 0 2307 171 51 7 chr3 156669355 156669769 -70854809 + MSTB1 LTR MaLR 1 432 0 305 129 81 32 chr3 156669974 156670036 -70854542 + MLT1A2 LTR MaLR 1 65 -309 1922 155 25 52 chr3 156670042 156670409 -70854169 - MER47A DNA MER2_type -1 365 9 1195 221 50 18 chr3 156670405 156670686 -70853892 + MLT1A2 LTR MaLR 74 363 -11 * 188 238 36 83 chr3 156670881 156670965 -70853613 - L2 LINE L2 -67 3246 3167 2225 117 0 3 chr3 156670992 156671299 -70853279 - AluSx SINE Alu -6 306 1 960 138 24 54 chr3 156671721 156671888 -70852690 + AluJo SINE Alu 83 244 -68 316 308 27 7 chr3 156672341 156672487 -70852091 - L1M4c LINE L1 -4811 1796 1648 460 235 23 131 chr3 156672616 156672876 -70851702 - L1M4c LINE L1 -5008 1418 1187 397 233 29 10 chr3 156672893 156672996 -70851582 - ERVL LTR ERVL -3764 2000 1896 346 185 0 0 chr3 156673065 156673130 -70851448 - LTR50 LTR ERVL -120 675 611 1004 236 201 20 chr3 156673173 156673572 -70851006 - LTR50 LTR ERVL -316 479 9 420 247 48 15 chr3 156676331 156676479 -70848099 + L1ME LINE L1 5515 5668 -453 21 36 0 0 chr3 156676628 156676656 -70847922 + AT_rich Low_complexity Low_complexity 1 28 0 2016 120 0 28 chr3 156676826 156677130 -70847448 + AluSx SINE Alu 6 301 0 346 244 12 0 chr3 156677173 156677255 -70847323 + MIR SINE MIR 172 254 -8 2326 116 0 0 chr3 156677432 156677742 -70846836 + AluSx SINE Alu 1 310 -2 326 339 47 74 chr3 156678054 156678502 -70846076 + L2 LINE L2 2326 2761 -553 2436 58 3 13 chr3 156678704 156679013 -70845565 - AluY SINE Alu -5 306 1 1635 166 32 0 chr3 156679237 156679514 -70845064 - AluJb SINE Alu -26 286 1 2237 104 0 13 chr3 156680087 156680403 -70844175 - AluSx SINE Alu 0 312 1 6370 188 73 18 chr3 156680403 156682360 -70842218 - L1M4 LINE L1 -363 6309 4244 3070 182 91 2 chr3 156682366 156682960 -70841618 - MER82 DNA MER2_type -6 647 1 4710 206 136 28 chr3 156682961 156683900 -70840678 - L1M4 LINE L1 -2400 4244 3408 1851 149 0 56 chr3 156683900 156684223 -70840355 - AluJo SINE Alu -7 305 1 4710 206 136 28 chr3 156684223 156684613 -70839965 - L1M4 LINE L1 -3236 3408 3062 2177 110 7 0 chr3 156684613 156684905 -70839673 - AluSx SINE Alu -18 294 1 4710 206 136 28 chr3 156684905 156685167 -70839411 - L1M4 LINE L1 -3582 3062 2830 1945 140 0 37 chr3 156685167 156685488 -70839090 - AluSx SINE Alu -1 311 3 4710 206 136 28 chr3 156685488 156685910 -70838668 - L1M4 LINE L1 -3814 2830 2455 2179 94 7 3 chr3 156685910 156686198 -70838380 - AluSg SINE Alu -21 289 1 4710 206 136 28 chr3 156686198 156686343 -70838235 - L1M4 LINE L1 -4189 2455 1849 2017 266 84 62 chr3 156686345 156687338 -70837240 - L1M4 LINE L1 -5528 1014 1 260 300 70 57 chr3 156687362 156687592 -70836986 - L2 LINE L2 -894 2420 2188 43264 33 23 2 chr3 156687756 156693642 -70830936 - L1HS LINE L1 -157 5998 1 1444 221 141 34 chr3 156693645 156693920 -70830658 - L1M4 LINE L1 -881 5265 5021 180 0 0 0 chr3 156693920 156693940 -70830638 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1444 221 141 34 chr3 156693940 156693985 -70830593 - L1M4 LINE L1 -1125 5021 4982 1733 184 3 13 chr3 156693985 156694300 -70830278 - AluJb SINE Alu 0 312 1 1444 221 141 34 chr3 156694300 156694516 -70830062 - L1M4 LINE L1 -1164 4982 4670 486 0 0 0 chr3 156694517 156694571 -70830007 + (TTCC)n Simple_repeat Simple_repeat 3 56 0 2291 87 0 0 chr3 156694571 156694857 -70829721 - AluY SINE Alu -25 286 1 5211 126 73 22 chr3 156694883 156695037 -70829541 - L1MA4A LINE L1 -39 6966 6821 2395 94 0 0 chr3 156695037 156695336 -70829242 - AluSx SINE Alu -13 299 1 5211 126 73 22 chr3 156695336 156696266 -70828312 - L1MA4A LINE L1 -184 6821 5828 * 11579 205 39 39 chr3 156696260 156697105 -70827473 - L1MA4A LINE L1 -2543 4305 3461 1644 106 0 46 chr3 156697105 156697342 -70827236 + AluSc SINE Alu 1 226 -83 11579 205 39 39 chr3 156697342 156699227 -70825351 - L1MA4A LINE L1 -3387 3461 1576 2265 100 0 0 chr3 156699227 156699542 -70825036 - AluSc SINE Alu 0 315 1 11579 205 39 39 chr3 156699542 156701117 -70823461 - L1MA4A LINE L1 -5272 1576 2 3452 210 100 42 chr3 156701123 156701440 -70823138 - L1M4 LINE L1 -1462 4684 4387 2199 120 0 0 chr3 156701440 156701731 -70822847 - AluSx SINE Alu -21 291 1 3452 210 100 42 chr3 156701731 156702072 -70822506 - L1M4 LINE L1 -1759 4387 4067 2370 91 3 0 chr3 156702072 156702370 -70822208 - AluSx SINE Alu -13 299 1 3452 210 100 42 chr3 156702370 156702861 -70821717 - L1M4 LINE L1 -2079 4067 3467 23 54 0 0 chr3 156702876 156702913 -70821665 + AT_rich Low_complexity Low_complexity 1 37 0 255 236 97 0 chr3 156703844 156703916 -70820662 - MIR SINE MIR -155 107 29 405 305 13 26 chr3 156703924 156704075 -70820503 + MIR SINE MIR 114 262 0 618 121 0 0 chr3 156704197 156704280 -70820298 - AluSg/x SINE Alu -18 291 209 280 244 139 17 chr3 156704989 156705104 -70819474 - L2 LINE L2 -5 3308 3180 251 246 33 0 chr3 156705104 156705165 -70819413 + MER3 DNA MER1_type 27 89 -120 320 0 0 24 chr3 156705165 156705206 -70819372 + (TTAAA)n Simple_repeat Simple_repeat 1 40 0 707 177 16 16 chr3 156705214 156705338 -70819240 - MER3 DNA MER1_type -85 124 1 604 275 160 20 chr3 156705418 156705832 -70818746 - L2 LINE L2 -245 3068 2555 2288 102 0 0 chr3 156707000 156707293 -70817285 - AluSx SINE Alu -19 293 1 259 270 10 20 chr3 156707302 156707402 -70817176 - L2 LINE L2 -607 2707 2609 1992 151 0 6 chr3 156707733 156708044 -70816534 - AluJb SINE Alu -3 309 1 201 39 0 0 chr3 156708661 156708687 -70815891 + (GAATG)n Simple_repeat Simple_repeat 1 26 0 2288 107 3 0 chr3 156709243 156709542 -70815036 - AluSq SINE Alu -13 300 1 610 229 53 12 chr3 156709581 156709751 -70814827 - MER5B DNA MER1_type 0 178 2 268 256 158 75 chr3 156709820 156709879 -70814699 + MIR SINE MIR 76 129 -133 1583 93 166 4 chr3 156709879 156710172 -70814406 + AluYa8 SINE Alu 1 300 0 268 256 158 75 chr3 156710172 156710245 -70814333 + MIR SINE MIR 129 219 -43 215 278 0 0 chr3 156710285 156710339 -70814239 - L3b LINE CR1 -237 1346 1293 4455 115 114 131 chr3 156710629 156712057 -70812521 - pTR5 LTR ERV1 0 2438 743 1925 169 0 16 chr3 156712363 156712677 -70811901 + AluJb SINE Alu 1 309 -3 202 191 24 0 chr3 156713140 156713182 -70811396 - L2 LINE L2 0 3272 3230 203 273 0 0 chr3 156714996 156715040 -70809538 + (TGGA)n Simple_repeat Simple_repeat 3 46 0 1019 228 127 0 chr3 156715117 156715385 -70809193 + L2 LINE L2 3012 3313 0 2358 92 3 7 chr3 156715508 156715814 -70808764 - AluSx SINE Alu -7 305 1 32 67 0 0 chr3 156716616 156716676 -70807902 + AT_rich Low_complexity Low_complexity 1 60 0 232 211 0 35 chr3 156716676 156716733 -70807845 - FLAM SINE Alu -1 132 78 * 325 163 19 0 chr3 156716719 156716776 -70807802 - Alu SINE Alu -249 53 2 905 117 0 29 chr3 156716985 156717122 -70807456 + FLAM_C SINE Alu 1 133 0 305 324 0 9 chr3 156717225 156717330 -70807248 - L1MC4a LINE L1 -1884 5924 5821 2183 84 10 0 chr3 156717330 156717627 -70806951 - L1PA6 LINE L1 -4 6150 5851 2263 112 7 0 chr3 156717635 156717929 -70806649 + AluSx SINE Alu 1 296 -16 2134 70 28 0 chr3 156718047 156718333 -70806245 + L1MA1 LINE L1 6009 6302 0 245 301 0 48 chr3 156718339 156718442 -70806136 - L1MC4a LINE L1 -490 5631 5534 245 246 31 0 chr3 156718482 156718547 -70806031 - MIR SINE MIR -60 148 82 248 236 14 14 chr3 156718659 156718731 -70805847 + MIR SINE MIR 77 148 -114 195 47 23 47 chr3 156720231 156720274 -70804304 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 251 175 35 0 chr3 156720603 156720660 -70803918 - MIR SINE MIR -29 233 175 1494 202 68 88 chr3 156720826 156720990 -70803588 - L1MEc LINE L1 -3454 3086 2920 2145 124 26 3 chr3 156720990 156721296 -70803282 - AluSq SINE Alu 0 313 1 1494 202 68 88 chr3 156721296 156721684 -70802894 - L1MEc LINE L1 -3620 2920 2526 2190 110 14 0 chr3 156721684 156721974 -70802604 - AluSx SINE Alu -18 294 1 1494 202 68 88 chr3 156721974 156722570 -70802008 - L1MEc LINE L1 -4014 2526 1886 707 154 8 31 chr3 156722598 156722728 -70801850 - FLAM_C SINE Alu -16 127 1 534 285 78 27 chr3 156722739 156722995 -70801583 - L1MEc LINE L1 -4692 1848 1580 2005 164 3 0 chr3 156722995 156723300 -70801278 - AluJo SINE Alu -6 306 1 812 131 0 35 chr3 156723301 156723446 -70801132 - AluJo SINE Alu -172 140 1 2330 249 80 61 chr3 156723448 156724557 -70800021 - L1ME LINE L1 -4575 1426 1 8294 66 10 2 chr3 156725692 156727537 -70797041 - L1PA6 LINE L1 -11 6143 4288 22 0 0 0 chr3 156727598 156727620 -70796958 + AT_rich Low_complexity Low_complexity 1 22 0 1664 144 39 126 chr3 156727675 156727742 -70796836 - L1PB4 LINE L1 -13 6153 6082 2265 84 28 0 chr3 156727742 156728028 -70796550 - AluSp SINE Alu -17 296 3 1664 144 39 126 chr3 156728028 156728342 -70796236 - L1PB4 LINE L1 -84 6082 5805 1432 151 0 0 chr3 156728391 156728597 -70795981 - AluJb SINE Alu -106 206 1 582 184 0 161 chr3 156728613 156728830 -70795748 + MLT1E3 LTR MaLR 58 239 -385 2177 116 3 28 chr3 156728927 156729247 -70795331 - AluSx SINE Alu 0 312 1 232 130 39 117 chr3 156729257 156729334 -70795244 + MLT2C2 LTR ERVL 323 393 -71 451 52 0 0 chr3 156729334 156729392 -70795186 - AluSp/q SINE Alu -14 299 242 302 0 26 0 chr3 156729720 156729758 -70794820 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2027 110 11 35 chr3 156729764 156730046 -70794532 - AluSx SINE Alu -37 275 1 1297 188 100 42 chr3 156730710 156731019 -70793559 - MLT2D LTR ERVL -83 331 5 2389 76 3 0 chr3 156731040 156731331 -70793247 + AluSc SINE Alu 1 292 -17 488 185 83 0 chr3 156731666 156731774 -70792804 - L1ME4a LINE L1 -2 6119 6003 338 272 80 0 chr3 156731792 156731917 -70792661 - L1ME4a LINE L1 -188 5933 5799 1992 135 13 10 chr3 156732106 156732417 -70792161 - AluSx SINE Alu 0 312 1 2453 79 0 0 chr3 156732423 156732726 -70791852 - AluY SINE Alu -8 303 1 917 64 0 0 chr3 156732727 156732836 -70791742 - AluSc SINE Alu -14 295 187 2101 130 0 3 chr3 156732983 156733283 -70791295 - AluSx SINE Alu -13 299 1 2004 138 0 7 chr3 156733283 156733572 -70791006 - AluSx SINE Alu -25 287 1 2667 52 3 0 chr3 156733582 156733891 -70790687 - AluY SINE Alu -1 310 1 2327 77 0 7 chr3 156735155 156735486 -70789092 - AluSp SINE Alu 0 329 1 797 141 16 8 chr3 156735808 156735936 -70788642 + AluJo/FLAM SINE Alu 5 133 -169 459 123 0 0 chr3 156735936 156736009 -70788569 + Alu SINE Alu 235 307 -5 2234 110 10 0 chr3 156736010 156736310 -70788268 + AluSx SINE Alu 1 303 -9 444 221 7 15 chr3 156736312 156736448 -70788130 + GA-rich Low_complexity Low_complexity 3 137 0 366 23 0 0 chr3 156738650 156738693 -70785885 + (TA)n Simple_repeat Simple_repeat 1 43 0 1705 137 38 24 chr3 156738798 156739090 -70785488 + AluJb SINE Alu 1 296 -16 623 284 84 4 chr3 156739116 156739391 -70785187 + L1ME4a LINE L1 5588 5884 -237 248 0 31 0 chr3 156739769 156739801 -70784777 + (TG)n Simple_repeat Simple_repeat 2 34 0 5885 198 86 37 chr3 156740591 156740786 -70783792 + L1MC4 LINE L1 6458 6642 -1400 192 40 0 0 chr3 156740786 156740811 -70783767 + (TG)n Simple_repeat Simple_repeat 1 25 0 5885 198 86 37 chr3 156740811 156742123 -70782455 + L1MC4 LINE L1 6642 8039 -3 267 308 26 17 chr3 156742129 156742246 -70782332 + MIR SINE MIR 137 254 -8 203 184 26 0 chr3 156742249 156742287 -70782291 + (ATGGTG)n Simple_repeat Simple_repeat 6 44 0 2061 128 14 0 chr3 156742307 156742603 -70781975 + AluSq SINE Alu 4 303 -10 22 56 0 0 chr3 156742890 156742926 -70781652 + AT_rich Low_complexity Low_complexity 1 36 0 23 33 0 0 chr3 156743001 156743031 -70781547 + AT_rich Low_complexity Low_complexity 1 30 0 382 289 62 67 chr3 156743037 156743124 -70781454 - L3 LINE CR1 -1 1576 1490 1913 167 6 51 chr3 156743124 156743477 -70781101 + MER1B DNA MER1_type 1 337 0 382 289 62 67 chr3 156743477 156743614 -70780964 - L3 LINE CR1 -87 1490 1353 32616 92 9 10 chr3 156743732 156748342 -70776236 - L1P LINE L1 -1533 4613 11 21 0 0 0 chr3 156748427 156748448 -70776130 + AT_rich Low_complexity Low_complexity 1 21 0 644 205 26 13 chr3 156748789 156748940 -70775638 - Charlie8 DNA MER1_type -2195 222 70 1410 153 59 3 chr3 156749043 156749350 -70775228 + MER33 DNA MER1_type 1 324 0 200 326 0 0 chr3 156749850 156749896 -70774682 - L2 LINE L2 -18 3254 3209 1496 159 57 4 chr3 156749960 156750245 -70774333 - AluJo SINE Alu 0 302 4 480 304 14 7 chr3 156750799 156750947 -70773631 + MIR3 SINE MIR 3 151 -57 213 39 0 0 chr3 156751576 156751602 -70772976 + (TGGGGG)n Simple_repeat Simple_repeat 3 28 0 443 250 35 17 chr3 156752641 156752757 -70771821 + MER94 DNA DNA 16 133 -1 224 258 45 123 chr3 156753084 156753239 -70771339 - L2 LINE L2 -88 3225 3083 636 278 67 42 chr3 156753576 156753933 -70770645 + L1MC4 LINE L1 6552 7002 -891 218 176 29 15 chr3 156755346 156755414 -70769164 + (CAA)n Simple_repeat Simple_repeat 2 70 0 2245 68 0 0 chr3 156755420 156755726 -70768852 + AluSx SINE Alu 1 306 0 2201 97 0 0 chr3 156756041 156756340 -70768238 - AluSx SINE Alu -13 299 1 2076 104 0 3 chr3 156756467 156756764 -70767814 - AluSx SINE Alu -8 304 9 925 130 0 0 chr3 156757457 156757595 -70766983 - AluSg/x SINE Alu -21 289 152 14574 34 5 9 chr3 156757613 156760152 -70764426 - L1PA5 LINE L1 0 6154 3623 505 161 8 25 chr3 156761283 156761401 -70763177 + L1MA4 LINE L1 6185 6300 0 357 77 0 0 chr3 156761487 156761539 -70763039 + L1MA6 LINE L1 6249 6300 0 597 275 106 21 chr3 156761648 156761932 -70762646 + L1MC4 LINE L1 6695 7002 -1040 2144 64 53 0 chr3 156762060 156762341 -70762237 + AluY SINE Alu 1 296 -15 310 205 115 0 chr3 156762759 156762837 -70761741 + MER69 DNA AcHobo 1888 1974 -552 522 181 0 0 chr3 156762861 156762966 -70761612 + (CA)n Simple_repeat Simple_repeat 2 106 0 302 182 91 13 chr3 156762966 156763043 -70761535 - L1MCa LINE L1 -4349 2077 1995 241 133 0 22 chr3 156763076 156763121 -70761457 + MER69 DNA AcHobo 1984 2027 -499 1193 85 6 30 chr3 156763228 156763392 -70761186 - MER49 LTR ERV1 -41 882 723 1376 80 11 11 chr3 156763395 156763583 -70760995 - AluSq SINE Alu -105 208 21 2280 258 94 18 chr3 156763919 156764600 -70759978 + MER45C DNA AcHobo 1 733 -220 2064 125 0 3 chr3 156764619 156764930 -70759648 - AluSx SINE Alu -2 310 1 1196 185 35 42 chr3 156765007 156765293 -70759285 + MER45B DNA AcHobo 713 996 -44 230 347 10 0 chr3 156765634 156765732 -70758846 - MER5B DNA MER1_type -21 157 59 296 327 33 13 chr3 156765854 156766004 -70758574 + MIR3 SINE MIR 44 196 -12 676 305 46 36 chr3 156766172 156766419 -70758159 + MIR SINE MIR 2 247 -15 1917 148 6 3 chr3 156767982 156768293 -70756285 - AluJb SINE Alu 0 312 1 4136 101 17 2 chr3 156768453 156769048 -70755530 + L1MA3 LINE L1 5701 6304 -1 1634 195 0 0 chr3 156769582 156769869 -70754709 + AluJb SINE Alu 3 289 -23 1126 203 8 21 chr3 156770119 156770329 -70754249 + AluJo SINE Alu 68 276 -36 2163 112 3 3 chr3 156770329 156770642 -70753936 - AluSp SINE Alu 0 313 1 1126 203 8 21 chr3 156770642 156770673 -70753905 + AluJo SINE Alu 276 306 -6 485 239 5 65 chr3 156770675 156770859 -70753719 + L1MEd LINE L1 1030 1202 -4917 294 29 0 0 chr3 156771187 156771222 -70753356 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1508 157 73 11 chr3 156771548 156771822 -70752756 - AluJb SINE Alu -17 295 5 2119 113 0 0 chr3 156774581 156774881 -70749697 + AluSx SINE Alu 1 300 -12 2105 119 0 0 chr3 156775114 156775407 -70749171 - AluSx SINE Alu -19 293 1 245 241 58 23 chr3 156776547 156776634 -70747944 - MIR3 SINE MIR -12 196 107 2074 202 113 17 chr3 156778970 156779431 -70745147 + MLT1D LTR MaLR 1 505 0 2165 99 6 25 chr3 156780356 156780670 -70743908 + AluSx SINE Alu 5 312 0 221 372 47 23 chr3 156781029 156781158 -70743420 + L2 LINE L2 3136 3267 -5 243 103 0 0 chr3 156782427 156782466 -70742112 + (TG)n Simple_repeat Simple_repeat 2 40 0 4789 13 0 14 chr3 156783641 156784223 -70740355 - L1PA2 LINE L1 0 6155 5612 318 261 35 28 chr3 156784616 156784758 -70739820 + GA-rich Low_complexity Low_complexity 1 143 0 2241 149 11 3 chr3 156785827 156786189 -70738389 - MLT1A1 LTR MaLR 0 365 1 1578 176 31 0 chr3 156786376 156786665 -70737913 + AluJb SINE Alu 1 298 -14 788 234 71 0 chr3 156787203 156787400 -70737178 - LTR33A LTR ERVL -7 516 306 464 302 119 17 chr3 156787379 156787614 -70736964 + MLT1L LTR MaLR 345 603 -12 * 1220 99 21 21 chr3 156788402 156788593 -70735985 - AluSg/x SINE Alu 0 310 120 531 192 34 135 chr3 156788727 156788820 -70735758 - MIR SINE MIR -10 252 190 2001 152 37 65 chr3 156788820 156789221 -70735357 + MLT1B LTR MaLR 1 390 0 531 192 34 135 chr3 156789221 156789335 -70735243 - MIR SINE MIR -72 190 66 640 282 108 24 chr3 156790020 156790307 -70734271 - LTR16A1 LTR ERVL 0 457 147 559 213 81 7 chr3 156791031 156791167 -70733411 - MIR SINE MIR -68 194 49 32 0 0 0 chr3 156791431 156791463 -70733115 + AT_rich Low_complexity Low_complexity 1 32 0 2312 63 7 0 chr3 156792097 156792398 -70732180 + AluY SINE Alu 1 303 -8 292 121 61 0 chr3 156792399 156792465 -70732113 - L1MD2 LINE L1 -2 6357 6288 1265 68 40 0 chr3 156792490 156792666 -70731912 + L1PA13 LINE L1 5977 6159 -4 1740 124 4 0 chr3 156793042 156793291 -70731287 + AluSx SINE Alu 1 250 -62 16434 60 7 1 chr3 156793392 156796838 -70727740 + L1P2 LINE L1 2333 5791 -363 959 134 0 0 chr3 156796938 156797080 -70727498 - MLT2C1 LTR ERVL -255 142 1 689 253 7 0 chr3 156797082 156797236 -70727342 + HAL1 LINE L1 1597 1751 -756 664 249 126 52 chr3 156797236 156797633 -70726945 - LTR16A1 LTR ERVL 0 457 73 324 70 0 0 chr3 156797656 156797699 -70726879 + (TG)n Simple_repeat Simple_repeat 1 43 0 2038 245 68 43 chr3 156797736 156798475 -70726103 + HAL1 LINE L1 1750 2506 -1 599 178 0 0 chr3 156798763 156798853 -70725725 + FAM SINE Alu 82 171 -14 2382 209 83 24 chr3 156799521 156800072 -70724506 - MLT1E LTR MaLR 0 593 10 648 235 34 7 chr3 156800500 156800649 -70723929 + MIR SINE MIR 22 174 -88 241 297 40 10 chr3 156801987 156802088 -70722490 - MIR SINE MIR -7 255 152 214 143 0 0 chr3 156803142 156803177 -70721401 - MIR SINE MIR -104 158 124 238 208 169 13 chr3 156803891 156803968 -70720610 + HAL1 LINE L1 742 830 -1677 203 111 0 44 chr3 156803971 156804016 -70720562 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 2691 247 84 43 chr3 156804051 156805114 -70719464 + HAL1 LINE L1 842 1947 -560 410 266 60 63 chr3 156805128 156805350 -70719228 + HAL1 LINE L1 2253 2475 -32 1928 160 3 0 chr3 156805350 156805638 -70718940 + AluJb SINE Alu 1 289 -23 410 266 60 63 chr3 156805638 156805667 -70718911 + HAL1 LINE L1 2475 2503 -4 311 175 32 16 chr3 156805673 156805736 -70718842 + MER116 DNA Mariner 17 80 0 2174 130 37 11 chr3 156805747 156806123 -70718455 + L1MA8 LINE L1 5847 6232 -59 23 0 0 0 chr3 156806129 156806152 -70718426 + AT_rich Low_complexity Low_complexity 1 23 0 7759 42 3 3 chr3 156806184 156807224 -70717354 - L1PA5 LINE L1 -11 6143 5103 229 307 10 30 chr3 156807669 156807770 -70716808 + MLT1K LTR MaLR 182 280 -308 263 176 15 59 chr3 156808012 156808080 -70716498 + MLT1K LTR MaLR 511 575 -13 532 319 77 59 chr3 156809169 156809611 -70714967 - L2 LINE L2 -10 3262 2813 766 248 133 47 chr3 156810168 156810342 -70714236 - L2 LINE L2 -703 2611 2453 1570 147 147 72 chr3 156810342 156810703 -70713875 - MLT1B LTR MaLR -2 388 1 766 248 133 47 chr3 156810703 156810911 -70713667 - L2 LINE L2 -861 2453 2196 891 168 0 0 chr3 156811125 156811256 -70713322 + FLAM_C SINE Alu 1 131 -2 23 0 0 0 chr3 156811291 156811314 -70713264 + AT_rich Low_complexity Low_complexity 1 23 0 429 298 155 24 chr3 156811624 156811892 -70712686 + LTR16C LTR ERVL 195 457 0 308 175 211 9 chr3 156811893 156812007 -70712571 - HAL1b LINE L1 -76 1272 1136 2322 83 0 3 chr3 156812037 156812326 -70712252 + AluSq SINE Alu 18 305 -8 514 226 0 0 chr3 156812391 156812484 -70712094 + MER96 DNA MER1_type? 1 93 -82 336 247 43 65 chr3 156812654 156812747 -70711831 + MIR SINE MIR 8 98 -110 229 354 0 0 chr3 156812952 156813017 -70711561 - L2 LINE L2 -8 3305 3241 771 335 133 49 chr3 156813737 156814839 -70709739 + L2 LINE L2 1671 2864 -450 760 264 108 8 chr3 156814983 156815241 -70709337 + L3 LINE CR1 1279 1562 -15 710 278 66 0 chr3 156815258 156815456 -70709122 - MIR SINE MIR -3 259 49 889 179 17 34 chr3 156815457 156815636 -70708942 + MER5A DNA MER1_type 8 183 -6 245 213 33 0 chr3 156816595 156816656 -70707922 - L1MC4 LINE L1 -1344 6698 6636 415 270 147 25 chr3 156817206 156817369 -70707209 - MIR SINE MIR -56 206 24 1553 224 85 3 chr3 156817510 156817876 -70706702 + MSTD LTR MaLR 1 396 0 234 301 0 0 chr3 156818031 156818104 -70706474 + L1ME4a LINE L1 5959 6031 -90 354 296 35 12 chr3 156818222 156818391 -70706187 + MER5B DNA MER1_type 1 173 -5 275 354 0 0 chr3 156818709 156818791 -70705787 - MIR SINE MIR -68 140 59 205 315 67 11 chr3 156818804 156818893 -70705685 - L2 LINE L2 -46 3226 3133 3402 154 39 34 chr3 156819960 156820571 -70704007 - MER90 LTR ERV1 0 614 1 819 243 24 15 chr3 156821644 156821869 -70702709 - MLT1K LTR MaLR -7 588 384 243 219 219 77 chr3 156822381 156822536 -70702042 + MIR SINE MIR 50 226 -36 6506 239 43 28 chr3 156823359 156823574 -70701004 - L1MDa LINE L1 -1933 4607 4397 2115 141 55 25 chr3 156823574 156823936 -70700642 + THE1C LTR MaLR 3 375 0 6506 239 43 28 chr3 156823936 156825699 -70698879 - L1MDa LINE L1 -2143 4397 2598 1456 199 59 0 chr3 156825710 156825982 -70698596 - MSTB LTR MaLR -138 288 1 582 85 0 0 chr3 156825982 156826064 -70698514 - L1M1 LINE L1 -4855 2710 2629 7349 113 6 7 chr3 156826088 156827296 -70697282 - L1MA1 LINE L1 0 6302 5097 1416 142 96 21 chr3 156827287 156827568 -70697010 - L1MDa LINE L1 -4358 2182 1881 * 1415 94 10 5 chr3 156827600 156827633 -70696945 - L1PA12 LINE L1 -118 6050 6018 280 259 29 93 chr3 156827633 156827804 -70696774 - L1MB3 LINE L1 -174 6009 5852 638 144 32 32 chr3 156827804 156827929 -70696649 - L1PB3 LINE L1 -1 6153 6029 280 259 29 93 chr3 156827929 156827962 -70696616 - L1MB3 LINE L1 -331 5852 5818 1327 280 148 68 chr3 156827968 156828459 -70696119 + L2 LINE L2 1289 1739 -1575 2553 63 0 0 chr3 156828459 156828760 -70695818 + AluY SINE Alu 1 301 -10 1327 280 148 68 chr3 156828760 156829540 -70695038 + L2 LINE L2 1739 2662 -652 22 0 0 0 chr3 156829676 156829698 -70694880 + AT_rich Low_complexity Low_complexity 1 22 0 371 323 62 23 chr3 156829907 156830164 -70694414 - L1MB3 LINE L1 -542 5817 5551 247 208 0 0 chr3 156830165 156830218 -70694360 + T-rich Low_complexity Low_complexity 1 53 0 11524 15 0 0 chr3 156830224 156832294 -70692284 - L1HS LINE L1 0 6155 4086 245 303 40 10 chr3 156832303 156832402 -70692176 - L1MB3 LINE L1 -2262 5546 5445 376 308 20 55 chr3 156832605 156832751 -70691827 + L2 LINE L2 2927 3067 -246 440 236 6 87 chr3 156832859 156833020 -70691558 - MLT2F LTR ERVL -515 148 1 573 333 62 0 chr3 156833059 156833251 -70691327 - MIR SINE MIR -13 249 46 336 281 15 98 chr3 156833514 156833580 -70690998 - MER5A DNA MER1_type -1 188 118 597 171 14 116 chr3 156833580 156833726 -70690852 + FLAM_A SINE Alu 1 131 -2 336 281 15 98 chr3 156833726 156833849 -70690729 - MER5A DNA MER1_type -71 118 2 427 269 119 72 chr3 156834068 156834496 -70690082 - LTR33A LTR ERVL -73 450 3 621 285 78 16 chr3 156834716 156834958 -70689620 + Charlie8 DNA MER1_type 1 257 -2160 22 80 0 0 chr3 156835032 156835082 -70689496 + AT_rich Low_complexity Low_complexity 1 50 0 183 100 0 0 chr3 156835152 156835182 -70689396 + (ATG)n Simple_repeat Simple_repeat 3 32 0 4794 127 26 42 chr3 156836430 156837239 -70687339 + L1PA15 LINE L1 5369 6164 -1 2221 107 0 0 chr3 156837254 156837543 -70687035 + AluSx SINE Alu 5 293 -19 335 287 13 45 chr3 156837558 156837715 -70686863 - HAL1 LINE L1 -1 2742 2591 471 103 0 0 chr3 156837733 156837801 -70686777 - MER41A LTR ERV1 -87 467 400 724 250 81 32 chr3 156837803 156838147 -70686431 - HAL1 LINE L1 -139 2604 2244 1972 182 26 19 chr3 156838150 156838529 -70686049 + MLT1B LTR MaLR 1 382 -8 272 339 63 16 chr3 156838655 156838782 -70685796 - MER91A DNA MER1_type 0 196 64 1053 273 42 59 chr3 156838875 156839215 -70685363 - L1M4c LINE L1 -689 2054 1514 332 298 72 58 chr3 156839665 156839957 -70684621 - L2 LINE L2 -4 3309 3014 567 110 73 0 chr3 156839976 156840058 -70684520 + FLAM_C SINE Alu 30 117 -26 246 62 0 0 chr3 156840064 156840096 -70684482 + (CA)n Simple_repeat Simple_repeat 1 32 0 248 314 271 23 chr3 156840139 156840489 -70684089 - L2 LINE L2 -339 2975 2539 229 296 111 37 chr3 156841189 156841324 -70683254 - L2 LINE L2 -180 3092 2948 219 69 0 0 chr3 156843325 156843354 -70681224 + (GA)n Simple_repeat Simple_repeat 2 30 0 204 222 0 0 chr3 156844085 156844121 -70680457 + polypyrimidine Low_complexity Low_complexity 1 36 0 457 274 63 59 chr3 156844162 156844491 -70680087 - L1ME3A LINE L1 -238 5932 5673 935 189 66 12 chr3 156844535 156844778 -70679800 + MER33 DNA MER1_type 47 302 -22 391 334 39 21 chr3 156845912 156846097 -70678481 + MIR SINE MIR 4 186 -62 1861 134 41 3 chr3 156846495 156846787 -70677791 + AluJo SINE Alu 1 303 -9 23 0 0 0 chr3 156847013 156847036 -70677542 + AT_rich Low_complexity Low_complexity 1 23 0 523 242 87 32 chr3 156847110 156847329 -70677249 + MER106A DNA MER1_type 1 231 -5 7022 107 21 48 chr3 156847957 156848919 -70675659 + Tigger3b DNA MER2_type 1 1013 -2015 1901 87 4 34 chr3 156848919 156849183 -70675395 + AluSq SINE Alu 21 276 -37 7022 107 21 48 chr3 156849183 156849397 -70675181 + Tigger3b DNA MER2_type 1013 1231 0 1542 194 53 26 chr3 156850119 156850460 -70674118 - MER39 LTR ERV1 -1 706 357 411 259 103 9 chr3 156850478 156850594 -70673984 - MER39 LTR ERV1 -568 139 13 1298 177 57 4 chr3 156850853 156851101 -70673477 - L1ME LINE L1 -559 5605 5345 950 286 118 40 chr3 156851107 156851846 -70672732 - L1M4 LINE L1 -2304 3842 3005 854 193 128 109 chr3 156851846 156852204 -70672374 + MLT1A1 LTR MaLR 1 365 0 950 286 118 40 chr3 156852204 156852451 -70672127 - L1M4 LINE L1 -3141 3005 2779 226 51 26 26 chr3 156854121 156854160 -70670418 - L1PB4 LINE L1 -2 6154 6116 4679 109 53 3 chr3 156854163 156854843 -70669735 - L1PB4 LINE L1 -9 6147 5434 1304 125 5 42 chr3 156854847 156855063 -70669515 - AluSg/x SINE Alu -8 304 97 997 173 11 5 chr3 156855063 156855254 -70669324 + L1 LINE L1 4010 4201 -1945 * 5518 213 29 21 chr3 156855243 156856581 -70667997 - L1PA15-16 LINE L1 -2606 4243 2890 2298 104 0 9 chr3 156856581 156856897 -70667681 - AluSq SINE Alu 0 313 1 5518 213 29 21 chr3 156856897 156857040 -70667538 - L1PA15-16 LINE L1 -3959 2890 2750 2383 236 36 113 chr3 156857031 156857355 -70667223 - L1PA15-16 LINE L1 -4513 2336 1989 * 2193 90 38 0 chr3 156857355 156857645 -70666933 - AluY SINE Alu -10 301 1 2383 236 36 113 chr3 156857645 156858478 -70666100 - L1PA15-16 LINE L1 -4860 1989 1268 1787 166 30 0 chr3 156858570 156858866 -70665712 - AluJo SINE Alu -7 305 1 1533 162 64 72 chr3 156859097 156859486 -70665092 - MLT1B LTR MaLR -4 386 1 215 312 237 0 chr3 156859500 156859593 -70664985 + L2 LINE L2 3147 3261 -11 1182 305 32 10 chr3 156859681 156860081 -70664497 + MLT1I LTR MaLR 1 409 0 547 284 108 21 chr3 156860651 156860845 -70663733 + MIR SINE MIR 20 230 -32 720 294 34 87 chr3 156861234 156861707 -70662871 - MLT1K LTR MaLR 0 588 141 2457 44 40 0 chr3 156862536 156862832 -70661746 - AluY SINE Alu -3 308 1 180 0 0 0 chr3 156863684 156863704 -70660874 + (A)n Simple_repeat Simple_repeat 1 20 0 483 243 0 0 chr3 156864202 156864309 -70660269 + MIR SINE MIR 66 172 -90 724 209 118 36 chr3 156864475 156864695 -70659883 - MIR SINE MIR -24 238 1 1478 198 3 58 chr3 156865622 156865935 -70658643 - AluJo SINE Alu -16 296 1 221 306 71 20 chr3 156865949 156866047 -70658531 - L2 LINE L2 -19 3253 3151 391 270 118 65 chr3 156866476 156866832 -70657746 - L2 LINE L2 -30 3242 2868 186 43 0 0 chr3 156867456 156867479 -70657099 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 30 27 0 0 chr3 156868454 156868491 -70656087 + AT_rich Low_complexity Low_complexity 1 37 0 709 207 64 45 chr3 156868606 156868872 -70655706 - L1MC5 LINE L1 -49 7912 7642 2196 259 42 22 chr3 156868927 156869571 -70655007 - MER20B DNA MER1_type -30 753 97 578 249 36 36 chr3 156869571 156869764 -70654814 + L1MC4 LINE L1 7599 7791 -251 474 255 145 25 chr3 156871451 156871651 -70652927 + Charlie2 DNA MER1_type 4 227 -2555 2188 101 3 43 chr3 156871651 156871977 -70652601 + AluSq SINE Alu 1 313 0 225 244 134 37 chr3 156871997 156872079 -70652499 + Charlie2 DNA MER1_type 213 302 -2480 266 301 24 0 chr3 156872253 156872336 -70652242 + HsTC2 DNA Tc2 51 135 -1763 * 1268 192 63 17 chr3 156872334 156872621 -70651957 + HsTC2 DNA Tc2 1260 1735 -163 183 205 0 0 chr3 156874427 156874466 -70650112 + T-rich Low_complexity Low_complexity 1 39 0 1829 137 35 11 chr3 156874596 156874880 -70649698 + AluJb SINE Alu 4 294 -18 324 304 119 10 chr3 156874977 156875171 -70649407 - L1ME3A LINE L1 -174 6390 6176 4005 265 92 40 chr3 156875171 156876503 -70648075 - HAL1 LINE L1 -536 1971 489 22695 31 1 3 chr3 156876503 156879855 -70644723 + L1PA4 LINE L1 2791 6155 0 4005 265 92 40 chr3 156879855 156880368 -70644210 - HAL1 LINE L1 -2018 489 4 841 278 131 47 chr3 156880399 156881086 -70643492 - L1ME3A LINE L1 -1118 5422 4649 1631 167 66 21 chr3 156881086 156881374 -70643204 - AluJo SINE Alu -11 301 1 841 278 131 47 chr3 156881374 156881536 -70643042 - L1ME3A LINE L1 -1891 4649 4502 1435 181 0 13 chr3 156881637 156881875 -70642703 - AluJo SINE Alu -75 237 3 600 312 89 38 chr3 156881889 156882395 -70642183 + L1ME4a LINE L1 5366 5897 -224 500 307 107 61 chr3 156882984 156883459 -70641119 - MLT1L LTR MaLR -8 607 111 334 326 78 54 chr3 156883810 156884052 -70640526 - L1ME3A LINE L1 -6205 335 88 2364 143 48 81 chr3 156885072 156885553 -70639025 + MLT1C LTR MaLR 3 467 0 726 261 81 39 chr3 156885625 156885885 -70638693 + HAL1 LINE L1 1 271 -2236 1910 278 59 45 chr3 156885887 156886136 -70638442 + HAL1 LINE L1 635 879 -1628 2377 147 54 54 chr3 156886136 156886491 -70638087 + MSTC LTR MaLR 1 358 -70 2110 122 21 0 chr3 156886491 156886779 -70637799 - AluSx SINE Alu -18 294 1 2377 147 54 54 chr3 156886779 156886851 -70637727 + MSTC LTR MaLR 357 428 0 1910 278 59 45 chr3 156886851 156886971 -70637607 + HAL1 LINE L1 879 996 -1511 1923 173 0 0 chr3 156886971 156887272 -70637306 + AluJo SINE Alu 12 312 0 1910 278 59 45 chr3 156887272 156887784 -70636794 + HAL1 LINE L1 996 1529 -978 274 91 116 0 chr3 156887842 156887895 -70636683 - MLT2C1 LTR ERVL 0 397 352 525 232 165 41 chr3 156887896 156888088 -70636490 - MER2 DNA MER2_type 0 345 130 1389 149 45 0 chr3 156888088 156888309 -70636269 - MER7A DNA MER2_type 0 346 116 1270 109 0 0 chr3 156888309 156888474 -70636104 - AluSq SINE Alu -18 295 131 338 173 272 0 chr3 156888480 156888561 -70636017 - MER7A DNA MER2_type -217 129 29 628 321 73 31 chr3 156888661 156889249 -70635329 - L1M4 LINE L1 -2058 4088 3476 333 0 0 0 chr3 156890935 156890972 -70633606 + (TG)n Simple_repeat Simple_repeat 1 37 0 1032 184 35 11 chr3 156892196 156892370 -70632208 - MER45A DNA AcHobo 0 178 1 747 278 211 57 chr3 156892537 156893096 -70631482 + L2 LINE L2 2364 3085 -228 2065 134 0 0 chr3 156893096 156893406 -70631172 - AluSp SINE Alu 0 310 1 747 278 211 57 chr3 156893406 156893625 -70630953 + L2 LINE L2 3085 3269 -44 435 274 286 0 chr3 156893787 156894126 -70630452 - L2 LINE L2 -50 3263 2828 198 379 35 0 chr3 156894279 156894366 -70630212 + MIR SINE MIR 21 110 -152 2571 137 60 2 chr3 156894750 156895151 -70629427 + MSTC LTR MaLR 5 428 0 691 256 30 47 chr3 156895192 156895426 -70629152 + MIR SINE MIR 3 232 -30 254 321 68 9 chr3 156895416 156895548 -70629030 - MIR SINE MIR -67 141 19 * 28 71 0 0 chr3 156895623 156895679 -70628899 + AT_rich Low_complexity Low_complexity 1 56 0 457 277 186 28 chr3 156896517 156896770 -70627808 + MLT1K LTR MaLR 1 293 -295 717 278 109 16 chr3 156896771 156897328 -70627250 - L1M4 LINE L1 -1300 4846 4238 546 167 77 55 chr3 156897328 156897557 -70627021 - MER106B DNA MER1_type 0 1059 1 685 264 93 49 chr3 156897637 156898236 -70626342 - L1MEd LINE L1 -4748 1562 891 1120 101 0 0 chr3 156898264 156898412 -70626166 - AluSg/x SINE Alu -7 305 158 441 279 57 21 chr3 156898426 156898709 -70625869 - L1MEd LINE L1 -5266 853 561 2412 76 7 3 chr3 156898885 156899186 -70625392 - AluY SINE Alu -9 302 1 302 276 24 8 chr3 156899217 156899344 -70625234 - L1MEd LINE L1 -5979 140 12 827 252 98 31 chr3 156899997 156900386 -70624192 - L1M4 LINE L1 -951 5195 4781 333 194 0 0 chr3 156900368 156900440 -70624138 + L1ME2 LINE L1 6084 6155 -9 * 329 317 33 101 chr3 156900562 156900868 -70623710 - L2 LINE L2 -3 3269 2985 25 0 0 0 chr3 156901015 156901040 -70623538 + AT_rich Low_complexity Low_complexity 1 25 0 484 248 128 51 chr3 156901313 156901547 -70623031 - MIR SINE MIR 0 262 11 186 167 0 0 chr3 156902032 156902068 -70622510 + (TA)n Simple_repeat Simple_repeat 1 36 0 450 289 179 28 chr3 156902606 156903136 -70621442 - MLT1L LTR MaLR -4 611 2 2009 145 117 29 chr3 156903408 156903828 -70620750 + MSTB2 LTR MaLR 1 457 0 323 154 16 16 chr3 156904991 156905072 -70619506 + MLT1I LTR MaLR 325 448 -2 2376 109 0 0 chr3 156905522 156905834 -70618744 - AluSx SINE Alu 0 312 1 441 291 70 43 chr3 156908084 156908274 -70616304 - L3 LINE CR1 -161 1416 1218 696 198 178 0 chr3 156908274 156908431 -70616147 + MER5A DNA MER1_type 1 185 -4 441 291 70 43 chr3 156908431 156908470 -70616108 - L3 LINE CR1 -359 1218 1181 416 264 44 0 chr3 156908698 156908853 -70615725 + MLT1L LTR MaLR 89 264 -324 1090 252 33 74 chr3 156908933 156909390 -70615188 - MLT1H LTR MaLR -99 450 13 1873 230 71 64 chr3 156909424 156910336 -70614242 - HAL1b LINE L1 0 1348 430 349 257 26 0 chr3 156910362 156910475 -70614103 - HAL1b LINE L1 -701 647 532 1078 90 0 0 chr3 156910638 156910793 -70613785 - AluSg/x SINE Alu 0 310 156 870 153 10 13 chr3 156911297 156911518 -70613060 + CT-rich Low_complexity Low_complexity 1 220 0 282 27 27 0 chr3 156911518 156911555 -70613023 + (TTTTC)n Simple_repeat Simple_repeat 1 38 0 807 147 17 6 chr3 156911555 156911732 -70612846 + CT-rich Low_complexity Low_complexity 2 180 0 330 67 0 0 chr3 156911756 156911801 -70612777 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 7189 26 0 0 chr3 156911801 156913408 -70611170 - L1PA3 LINE L1 -31 6124 4518 2090 128 13 3 chr3 156913410 156913714 -70610864 - AluSg SINE Alu -1 309 3 412 263 0 44 chr3 156914840 156914954 -70609624 - MIR SINE MIR -122 140 32 282 261 81 0 chr3 156915247 156915358 -70609220 - MLT1H LTR MaLR 0 549 430 331 213 154 37 chr3 156915501 156915637 -70608941 - MLT1H LTR MaLR -375 174 23 274 411 0 0 chr3 156915902 156916031 -70608547 + L2 LINE L2 3183 3311 -2 383 336 20 0 chr3 156916956 156917105 -70607473 - L2 LINE L2 -678 2636 2485 1539 116 31 8 chr3 156917176 156917435 -70607143 + L1PA13 LINE L1 5899 6163 0 313 251 48 72 chr3 156917570 156917737 -70606841 + HAL1b LINE L1 1178 1340 -8 813 219 54 15 chr3 156918617 156918822 -70605756 + MIR SINE MIR 47 259 -3 341 303 123 0 chr3 156919064 156919186 -70605392 - L2 LINE L2 0 3272 3136 432 243 0 21 chr3 156919266 156919410 -70605168 - L1ME LINE L1 -352 5810 5670 225 258 135 11 chr3 156919459 156919548 -70605030 + MER97a DNA MER1_type? 10 109 -785 1208 255 31 24 chr3 156919579 156919995 -70604583 + MER97b DNA MER1_type? 191 609 -444 2396 76 0 3 chr3 156920027 156920331 -70604247 + AluY SINE Alu 1 303 -8 21 0 0 0 chr3 156920466 156920487 -70604091 + AT_rich Low_complexity Low_complexity 1 21 0 1640 199 3 7 chr3 156920698 156920990 -70603588 + AluJb SINE Alu 3 293 -19 219 69 0 0 chr3 156921049 156921078 -70603500 + (T)n Simple_repeat Simple_repeat 1 29 0 440 237 68 51 chr3 156921209 156921445 -70603133 + MER97b DNA MER1_type? 848 1050 -3 311 240 58 41 chr3 156921453 156921574 -70603004 - L1MEc LINE L1 -2751 3464 3342 618 234 151 17 chr3 156921754 156922053 -70602525 - L1MEc LINE L1 -3173 3042 2704 962 164 76 160 chr3 156922060 156922458 -70602120 - MLT1A1 LTR MaLR -4 392 1 746 271 46 22 chr3 156922458 156922574 -70602004 - L1MEc LINE L1 -3522 2693 2581 2412 66 3 10 chr3 156922574 156922875 -70601703 - AluY SINE Alu -12 299 1 746 271 46 22 chr3 156922875 156923171 -70601407 - L1MEc LINE L1 -3634 2581 2271 432 276 86 20 chr3 156923629 156923930 -70600648 - L1MEc LINE L1 -4641 1755 1435 837 172 0 8 chr3 156923955 156924089 -70600489 + FLAM_C SINE Alu 1 133 -10 289 314 19 0 chr3 156924095 156924251 -70600327 - L1MEc LINE L1 -4979 1417 1259 252 339 21 42 chr3 156924439 156924678 -70599900 - L1MEc LINE L1 -5308 897 664 887 279 39 4 chr3 156924994 156925274 -70599304 + LTR16A1 LTR ERVL 168 457 0 1135 275 33 31 chr3 156925604 156925735 -70598843 + MLT1J2 LTR MaLR 58 187 -263 1956 174 70 24 chr3 156925735 156926148 -70598430 + MSTB1 LTR MaLR 1 432 0 1135 275 33 31 chr3 156926148 156926405 -70598173 + MLT1J2 LTR MaLR 187 447 -3 412 247 41 0 chr3 156926492 156926589 -70597989 - L2 LINE L2 -18 3295 3195 214 204 19 0 chr3 156926872 156926926 -70597652 + T-rich Low_complexity Low_complexity 3 57 0 23 0 0 0 chr3 156926961 156926984 -70597594 + AT_rich Low_complexity Low_complexity 1 23 0 5555 142 35 3 chr3 156926988 156927982 -70596596 - L1MC1 LINE L1 -2 6331 5306 28 29 0 0 chr3 156928400 156928435 -70596143 + AT_rich Low_complexity Low_complexity 1 35 0 230 301 36 0 chr3 156928480 156928563 -70596015 + MIR SINE MIR 59 144 -64 1908 156 10 0 chr3 156928850 156929138 -70595440 + AluSx SINE Alu 1 291 -21 245 197 16 0 chr3 156929752 156929813 -70594765 + GA-rich Low_complexity Low_complexity 1 62 0 29 84 0 0 chr3 156931480 156931551 -70593027 + AT_rich Low_complexity Low_complexity 1 71 0 806 229 246 69 chr3 156931565 156932460 -70592118 - HAL1 LINE L1 -132 2375 1323 428 306 135 16 chr3 156932512 156932705 -70591873 - HAL1 LINE L1 -1287 1220 1005 989 132 0 7 chr3 156932748 156932900 -70591678 - L1PB4 LINE L1 -12 6144 5994 1026 281 68 58 chr3 156933033 156933848 -70590730 - HAL1 LINE L1 -1684 823 1 240 307 144 13 chr3 156935128 156935293 -70589285 + MIR3 SINE MIR 8 188 -60 433 336 134 18 chr3 156935956 156936337 -70588241 - L2 LINE L2 -616 2698 2274 319 207 12 37 chr3 156936349 156936431 -70588147 + L2 LINE L2 2590 2669 -645 462 324 65 23 chr3 156937790 156938006 -70586572 + MIR SINE MIR 20 244 -18 206 312 87 51 chr3 156938316 156938454 -70586124 - MIR3 SINE MIR -63 145 3 1605 228 140 35 chr3 156939226 156939683 -70584895 - MLT1D LTR MaLR 0 505 1 1533 213 7 102 chr3 156939686 156940137 -70584441 - MLT1D-int LTR MaLR -3 1368 961 518 263 108 11 chr3 156940323 156940509 -70584069 + MER3 DNA MER1_type 1 204 -5 252 317 118 21 chr3 156940540 156940726 -70583852 - L2 LINE L2 -172 3100 2897 2555 50 0 0 chr3 156940819 156941118 -70583460 + AluY SINE Alu 1 299 -12 7525 45 7 23 chr3 156941307 156942796 -70581782 - SVA Other Other -875 1386 1 3246 201 11 81 chr3 156942906 156943844 -70580734 - MLT1D-int LTR MaLR -491 880 9 945 138 171 0 chr3 156943844 156944025 -70580553 - MLT1D LTR MaLR 0 505 294 380 307 58 34 chr3 156944231 156944436 -70580142 - L1ME LINE L1 -531 5590 5381 511 259 48 0 chr3 156944526 156944732 -70579846 + MLT1J2 LTR MaLR 3 185 -265 198 0 0 0 chr3 156945011 156945033 -70579545 + (TGAA)n Simple_repeat Simple_repeat 2 23 0 690 277 70 92 chr3 156946401 156947085 -70577493 + L2 LINE L2 2597 3272 0 186 115 0 213 chr3 156947654 156947676 -70576902 + L2 LINE L2 3261 3264 -49 376 289 101 19 chr3 156947676 156947835 -70576743 - MER5B DNA MER1_type -2 176 5 186 115 0 213 chr3 156947835 156947873 -70576705 + L2 LINE L2 3264 3308 -5 188 316 101 22 chr3 156948245 156948384 -70576194 - L2 LINE L2 0 3272 3123 877 213 48 54 chr3 156948385 156948652 -70575926 + MIR SINE MIR 7 262 0 2163 120 7 0 chr3 156951397 156951697 -70572881 - AluSc SINE Alu -7 302 1 2338 96 10 0 chr3 156952374 156952666 -70571912 - AluSc SINE Alu -14 295 1 866 132 0 15 chr3 156952710 156952846 -70571732 - AluSp/q SINE Alu -2 311 178 209 367 108 0 chr3 156953072 156953192 -70571386 + L2 LINE L2 3138 3270 -2 38785 87 10 9 chr3 156954469 156960621 -70563957 + L1PA6 LINE L1 1 6153 -1 607 270 58 31 chr3 156962019 156962245 -70562333 - MIR SINE MIR 0 262 31 944 219 32 21 chr3 156962424 156962611 -70561967 + MER5A DNA MER1_type 1 189 0 640 279 25 0 chr3 156963251 156963409 -70561169 - MLT1G1 LTR MaLR -3 592 431 772 250 9 56 chr3 156963509 156963741 -70560837 - L1MC4a LINE L1 -1932 5876 5656 483 265 68 68 chr3 156963756 156964396 -70560182 - L1MEd LINE L1 -815 1675 1002 549 296 122 38 chr3 156966015 156966228 -70558350 + MIR SINE MIR 5 235 -27 25 31 0 0 chr3 156966392 156966424 -70558154 + AT_rich Low_complexity Low_complexity 1 32 0 751 263 8 19 chr3 156967592 156967818 -70556760 - MIR SINE MIR 0 262 40 216 304 143 0 chr3 156969979 156970091 -70554487 + L2 LINE L2 3184 3311 -2 2010 169 45 14 chr3 156970915 156971269 -70553309 - MLT1A1 LTR MaLR 0 365 1 1652 231 91 17 chr3 156971573 156972037 -70552541 + MLT1H LTR MaLR 52 549 0 287 294 110 9 chr3 156972204 156972313 -70552265 + L2 LINE L2 3151 3270 -2 612 295 44 26 chr3 156972604 156972831 -70551747 - MIR SINE MIR -4 258 28 210 341 29 98 chr3 156973215 156973461 -70551117 - L2 LINE L2 -86 3186 2958 839 188 0 0 chr3 156973494 156973627 -70550951 + FLAM_A SINE Alu 1 133 0 1918 164 3 3 chr3 156974039 156974349 -70550229 + AluJo SINE Alu 2 311 -1 22 35 0 0 chr3 156974404 156974433 -70550145 + AT_rich Low_complexity Low_complexity 1 29 0 1602 205 103 30 chr3 156974551 156974986 -70549592 + MLT1C LTR MaLR 1 467 0 24 32 0 0 chr3 156975581 156975612 -70548966 + AT_rich Low_complexity Low_complexity 1 31 0 585 29 0 0 chr3 156976245 156976313 -70548265 - L1PA8 LINE L1 -8 6164 6097 2848 109 3 3 chr3 156976606 156976981 -70547597 + THE1C LTR MaLR 1 375 0 10544 110 45 38 chr3 156976981 156978550 -70546028 + THE1C-int LTR MaLR 1 1580 0 2690 117 11 16 chr3 156978550 156978927 -70545651 + THE1C LTR MaLR 1 375 0 311 305 53 0 chr3 156981778 156981873 -70542705 + MIR3 SINE MIR 81 180 -28 180 0 0 0 chr3 156984036 156984056 -70540522 + (A)n Simple_repeat Simple_repeat 1 20 0 514 259 163 0 chr3 156984204 156984370 -70540208 - MIR SINE MIR 0 262 70 222 261 193 17 chr3 156984877 156984996 -70539582 - L2 LINE L2 -5 3308 3169 376 360 20 30 chr3 156985525 156985725 -70538853 + MIR3 SINE MIR 4 201 -7 188 231 0 77 chr3 156986524 156986589 -70537989 + L3 LINE CR1 1325 1384 -193 812 283 130 7 chr3 156986694 156987231 -70537347 - L1MC4 LINE L1 0 8042 7440 26 0 0 0 chr3 156987380 156987406 -70537172 + AT_rich Low_complexity Low_complexity 1 26 0 416 270 27 18 chr3 156987408 156987519 -70537059 + L3 LINE CR1 1413 1524 -53 294 339 107 34 chr3 156988820 156988997 -70535581 - L2 LINE L2 -20 3252 3063 1012 202 0 0 chr3 156989037 156989205 -70535373 + FAM SINE Alu 1 168 -7 1247 237 50 39 chr3 156989391 156989768 -70534810 - MLT1G3 LTR MaLR -182 413 1 1215 128 22 0 chr3 156990009 156990189 -70534389 + L1PA10 LINE L1 5975 6158 -10 501 71 0 0 chr3 156990388 156990458 -70534120 + (CA)n Simple_repeat Simple_repeat 2 71 0 417 328 63 10 chr3 156990814 156991024 -70533554 - MIR SINE MIR -8 254 33 465 217 17 17 chr3 156991325 156991440 -70533138 + MER117 DNA MER1_type 52 166 -31 37 62 0 0 chr3 156991470 156991535 -70533043 + AT_rich Low_complexity Low_complexity 1 65 0 2286 99 0 0 chr3 156991536 156991874 -70532704 + AluSx SINE Alu 1 338 0 2252 87 0 7 chr3 156993467 156993754 -70530824 - AluSx SINE Alu -21 291 7 378 42 0 0 chr3 156993802 156993850 -70530728 + (TG)n Simple_repeat Simple_repeat 2 49 0 1772 193 59 70 chr3 156993859 156994330 -70530248 - MLT1C LTR MaLR 0 467 2 448 222 71 0 chr3 156994468 156994567 -70530011 + MER5A DNA MER1_type 4 109 -80 218 264 0 0 chr3 156994823 156994876 -70529702 - L2 LINE L2 0 3272 3220 330 320 158 36 chr3 156995355 156995608 -70528970 + L2 LINE L2 3030 3313 0 1713 192 0 10 chr3 156995873 156996175 -70528403 - AluJo SINE Alu -13 299 1 186 235 147 15 chr3 156998064 156998132 -70526446 - MIR SINE MIR -114 148 72 * 208 377 33 25 chr3 156998121 156998243 -70526335 - L2 LINE L2 0 3272 3150 290 311 52 15 chr3 156998271 156998406 -70526172 + MER5B DNA MER1_type 16 155 -23 294 300 10 20 chr3 156999070 156999170 -70525408 + MIR SINE MIR 164 262 0 972 220 84 0 chr3 157000168 157000359 -70524219 + MER63A DNA MER1_type 1 207 -3 231 353 29 0 chr3 157001290 157001358 -70523220 - MIR SINE MIR -187 75 6 2977 198 58 33 chr3 157002001 157002930 -70521648 - L1ME1 LINE L1 -86 6080 5139 248 335 54 60 chr3 157003140 157003307 -70521271 + MLT1F-int LTR MaLR 961 1126 -245 1074 236 129 49 chr3 157003323 157003688 -70520890 + MLT1F LTR MaLR 2 395 -147 1154 219 5 0 chr3 157004560 157004770 -70519808 - L1ME LINE L1 -469 5697 5487 564 272 141 23 chr3 157005021 157005326 -70519252 - LTR16B LTR ERVL -17 447 107 1094 280 84 3 chr3 157005484 157005830 -70518748 + LTR16C LTR ERVL 118 491 0 2831 171 10 11 chr3 157006232 157006752 -70517826 - L1MA6 LINE L1 -451 5840 5322 2349 156 39 21 chr3 157006752 157007183 -70517395 + L1MA6 LINE L1 5861 6299 -1 433 285 33 7 chr3 157007183 157007334 -70517244 - MER103 DNA DNA -11 155 1 272 314 107 14 chr3 157007477 157007617 -70516961 - L2 LINE L2 -179 3093 2941 1682 204 69 36 chr3 157007954 157008316 -70516262 + MLT1A2 LTR MaLR 1 374 0 316 318 93 13 chr3 157008353 157008504 -70516074 + MLT1K LTR MaLR 14 176 -412 1681 191 7 3 chr3 157008841 157009144 -70515434 - AluJo SINE Alu -8 304 1 917 161 0 0 chr3 157010142 157010285 -70514293 + MER7A DNA MER2_type 1 141 -205 2369 158 0 3 chr3 157010590 157010939 -70513639 + MER7A DNA MER2_type 1 346 0 21 0 0 0 chr3 157011148 157011169 -70513409 + AT_rich Low_complexity Low_complexity 1 21 0 425 276 73 0 chr3 157011642 157011765 -70512813 + L2 LINE L2 3141 3272 0 433 293 0 0 chr3 157011814 157011930 -70512648 + L1ME2 LINE L1 6036 6151 -13 411 253 22 55 chr3 157012011 157012193 -70512385 + L1MC4 LINE L1 7866 8041 -1 730 286 150 29 chr3 157013301 157013743 -70510835 - MLT1K LTR MaLR 0 615 102 242 329 35 0 chr3 157014517 157014602 -70509976 + MIR SINE MIR 25 112 -150 245 182 30 30 chr3 157014773 157014839 -70509739 + (TCTA)n Simple_repeat Simple_repeat 4 69 0 21 57 0 0 chr3 157014886 157014921 -70509657 + AT_rich Low_complexity Low_complexity 1 35 0 2950 168 33 22 chr3 157016808 157017346 -70507232 - L1MA6 LINE L1 0 6300 5769 258 32 0 0 chr3 157017346 157017377 -70507201 + (GA)n Simple_repeat Simple_repeat 2 32 0 2950 168 33 22 chr3 157017377 157017391 -70507187 - L1MA6 LINE L1 -531 5769 5757 198 0 0 0 chr3 157017391 157017413 -70507165 + (CA)n Simple_repeat Simple_repeat 2 23 0 2950 168 33 22 chr3 157017413 157017589 -70506989 - L1MA6 LINE L1 -543 5757 5528 1515 296 56 39 chr3 157017785 157018407 -70506171 - L1M2c LINE L1 -6154 635 3 1122 328 11 29 chr3 157018779 157019233 -70505345 + L1M3a LINE L1 2 447 -5508 227 343 48 0 chr3 157019426 157019531 -70505047 + L1M3a LINE L1 345 454 -5501 2575 247 42 49 chr3 157019594 157020460 -70504118 + L1MA6 LINE L1 556 1422 -4106 7464 31 0 0 chr3 157020471 157022060 -70502518 + L1PA3 LINE L1 4533 6121 -34 501 46 0 0 chr3 157022060 157022125 -70502453 + L1HS LINE L1 6086 6150 -5 3298 39 11 3 chr3 157022196 157022578 -70502000 + L1PA4 LINE L1 5770 6154 -1 1207 234 29 7 chr3 157022579 157022887 -70501691 + L1MA6 LINE L1 1436 1750 -4578 * 6778 163 27 9 chr3 157022868 157024050 -70500528 + L1MA6 LINE L1 4297 5512 -970 240 35 0 0 chr3 157024050 157024079 -70500499 + (CAAA)n Simple_repeat Simple_repeat 4 32 0 6778 163 27 9 chr3 157024079 157024580 -70499998 + L1MA6 LINE L1 5512 6002 -480 1822 114 0 0 chr3 157024580 157024832 -70499746 + L1MA6 LINE L1 6227 6480 -2 1122 256 81 16 chr3 157025055 157025376 -70499202 - MLT1I LTR MaLR -41 368 27 224 169 470 0 chr3 157025456 157025539 -70499039 + MIR SINE MIR 71 192 -70 269 310 11 0 chr3 157025576 157025663 -70498915 - L1ME4a LINE L1 -194 5927 5840 21 82 0 0 chr3 157026247 157026296 -70498282 + AT_rich Low_complexity Low_complexity 1 49 0 225 224 0 0 chr3 157026376 157026434 -70498144 + (TTCA)n Simple_repeat Simple_repeat 1 58 0 312 296 82 66 chr3 157026482 157026678 -70497900 - L2 LINE L2 -82 3190 2992 341 272 63 47 chr3 157027151 157027342 -70497236 + MIR SINE MIR 47 240 -22 195 347 14 24 chr3 157027562 157027698 -70496880 - MIR SINE MIR -50 212 25 495 266 177 15 chr3 157027994 157028197 -70496381 + MIR SINE MIR 27 262 0 2028 143 35 13 chr3 157028236 157028607 -70495971 + MLT1A1 LTR MaLR 1 363 -2 843 279 47 0 chr3 157028919 157029134 -70495444 + MIR SINE MIR 34 258 -4 248 68 0 23 chr3 157029615 157029659 -70494919 + (TTTTA)n Simple_repeat Simple_repeat 3 45 0 539 298 25 22 chr3 157030099 157030151 -70494427 + L1ME4a LINE L1 5633 5683 -438 5173 163 35 2 chr3 157030151 157030987 -70493591 + MER6 DNA MER2_type 3 865 0 539 298 25 22 chr3 157030987 157031209 -70493369 + L1ME4a LINE L1 5683 5908 -213 24 32 0 0 chr3 157031383 157031414 -70493164 + AT_rich Low_complexity Low_complexity 1 31 0 434 234 66 29 chr3 157031464 157031601 -70492977 + L1ME4a LINE L1 5964 6105 -16 610 336 152 18 chr3 157032300 157032781 -70491797 + L2 LINE L2 2739 3272 0 194 232 0 12 chr3 157033947 157034029 -70490549 + CT-rich Low_complexity Low_complexity 1 81 0 201 74 0 0 chr3 157035992 157036019 -70488559 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 456 295 26 39 chr3 157037138 157037294 -70487284 + MER5B DNA MER1_type 16 169 -9 223 234 125 16 chr3 157037785 157037849 -70486729 - L2 LINE L2 -2 3311 3241 297 0 0 0 chr3 157040168 157040201 -70484377 + (TAA)n Simple_repeat Simple_repeat 2 34 0 354 262 28 19 chr3 157040205 157040312 -70484266 - MIR SINE MIR -14 248 141 1118 266 65 29 chr3 157040320 157040733 -70483845 + L2 LINE L2 2529 2956 -358 336 246 35 49 chr3 157040706 157040848 -70483730 + L2 LINE L2 3099 3238 -75 * 666 26 0 0 chr3 157040855 157040933 -70483645 - AluY SINE Alu -4 305 228 999 67 0 0 chr3 157040933 157041052 -70483526 - AluY SINE Alu -192 119 1 335 290 130 0 chr3 157041175 157041275 -70483303 + L2 LINE L2 3160 3272 0 577 215 8 0 chr3 157042246 157042367 -70482211 - MER96B DNA MER1_type? 0 417 296 839 221 29 15 chr3 157042792 157043002 -70481576 + MIR SINE MIR 4 215 -47 713 322 96 18 chr3 157043362 157043694 -70480884 + MLT1K LTR MaLR 3 360 -228 405 133 0 0 chr3 157043759 157043834 -70480744 + (GA)n Simple_repeat Simple_repeat 1 75 0 523 249 94 22 chr3 157043834 157044015 -70480563 + MLT1K LTR MaLR 395 588 0 2376 92 3 0 chr3 157044212 157044515 -70480063 - AluSg SINE Alu -2 308 5 311 305 53 0 chr3 157046594 157046689 -70477889 + MIR3 SINE MIR 81 180 -28 180 0 0 0 chr3 157048852 157048872 -70475706 + (A)n Simple_repeat Simple_repeat 1 20 0 534 259 163 0 chr3 157049020 157049186 -70475392 - MIR SINE MIR 0 262 70 225 261 193 17 chr3 157049693 157049812 -70474766 - L2 LINE L2 -5 3308 3169 400 360 20 30 chr3 157050341 157050541 -70474037 + MIR3 SINE MIR 4 201 -7 195 231 0 77 chr3 157051340 157051405 -70473173 + L3 LINE CR1 1325 1384 -193 747 289 132 9 chr3 157051510 157052047 -70472531 - L1MC4 LINE L1 0 8042 7440 26 0 0 0 chr3 157052196 157052222 -70472356 + AT_rich Low_complexity Low_complexity 1 26 0 408 270 27 18 chr3 157052224 157052335 -70472243 + L3 LINE CR1 1413 1524 -53 303 339 107 34 chr3 157053636 157053813 -70470765 - L2 LINE L2 -20 3252 3063 940 202 0 0 chr3 157053853 157054021 -70470557 + FAM SINE Alu 1 168 -7 233 232 116 87 chr3 157054175 157054313 -70470265 - MIR SINE MIR -33 229 88 227 256 0 0 chr3 157054344 157054383 -70470195 + Tigger7 DNA MER2_type 2449 2487 0 227 229 0 0 chr3 157054406 157054454 -70470124 - MIR SINE MIR -67 195 148 204 293 0 17 chr3 157054565 157054623 -70469955 - L2 LINE L2 -4 3309 3253 428 239 30 45 chr3 157055599 157055733 -70468845 + MIR SINE MIR 46 177 -85 1729 254 35 8 chr3 157056077 157056584 -70467994 - L1ME1 LINE L1 -5 6230 5710 * 2178 243 84 46 chr3 157056565 157057670 -70466908 - L1ME1 LINE L1 -4615 1781 635 1069 268 33 11 chr3 157057668 157058034 -70466544 - L1M4 LINE L1 -1302 4844 4471 * 1688 224 47 59 chr3 157058060 157058653 -70465925 - L1MDb LINE L1 -5030 1379 794 270 0 0 0 chr3 157058969 157058999 -70465579 + (GA)n Simple_repeat Simple_repeat 1 30 0 1279 60 18 0 chr3 157059618 157059786 -70464792 - L1MA2 LINE L1 0 6304 6134 974 83 17 28 chr3 157060168 157060349 -70464229 + (TTCC)n Simple_repeat Simple_repeat 2 180 0 414 141 14 3 chr3 157060563 157060706 -70463872 + MER53 DNA DNA 1 187 -2 1041 287 65 46 chr3 157061482 157062344 -70462234 + L1ME4a LINE L1 5245 6120 -1 567 281 59 46 chr3 157062914 157063152 -70461426 + MIR SINE MIR 20 260 -2 981 174 0 12 chr3 157063458 157063625 -70460953 - FRAM SINE Alu -11 165 1 180 231 0 0 chr3 157064280 157064332 -70460246 + T-rich Low_complexity Low_complexity 1 52 0 340 323 83 10 chr3 157064752 157064944 -70459634 - MIR SINE MIR 0 262 57 191 161 0 0 chr3 157065367 157065398 -70459180 + MER5A DNA MER1_type 44 74 -115 186 150 283 33 chr3 157065398 157065458 -70459120 - MER5A DNA MER1_type -114 75 1 376 269 305 12 chr3 157066033 157066200 -70458378 - MIR SINE MIR -34 228 13 21 36 0 0 chr3 157066641 157066669 -70457909 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 157066778 157066799 -70457779 + AT_rich Low_complexity Low_complexity 1 21 0 203 281 35 113 chr3 157067628 157067859 -70456719 + L2 LINE L2 2594 2806 -508 207 373 25 35 chr3 157067887 157068088 -70456490 - L2 LINE L2 -517 2797 2599 2367 95 0 0 chr3 157068848 157069144 -70455434 - AluSg SINE Alu -14 296 1 826 202 38 6 chr3 157069183 157069366 -70455212 + MER5A DNA MER1_type 1 189 0 580 170 0 89 chr3 157069401 157069536 -70455042 - MER49 LTR ERV1 -800 123 1 474 233 185 5 chr3 157069536 157069725 -70454853 + MLT1H LTR MaLR 327 549 0 377 289 6 13 chr3 157070067 157070223 -70454355 + L1MEd LINE L1 24 178 -5941 324 309 15 22 chr3 157070243 157070379 -70454199 + L1MEd LINE L1 275 409 -5710 304 135 0 19 chr3 157070427 157070479 -70454099 + MLT1H LTR MaLR 473 523 -26 351 260 13 0 chr3 157070479 157070556 -70454022 + L1MEd LINE L1 504 581 -5538 28 29 0 0 chr3 157070567 157070602 -70453976 + AT_rich Low_complexity Low_complexity 1 35 0 253 244 163 49 chr3 157070697 157070820 -70453758 + MIR3 SINE MIR 69 205 -3 256 109 0 0 chr3 157071269 157071312 -70453266 - MLT1B LTR MaLR -53 337 304 288 272 0 49 chr3 157071530 157071611 -70452967 + MLT1K LTR MaLR 142 218 -370 399 273 150 35 chr3 157071725 157071952 -70452626 + MLT1K LTR MaLR 331 583 -5 254 297 63 45 chr3 157072730 157072841 -70451737 + MIR SINE MIR 27 139 -123 25 0 0 0 chr3 157072929 157072954 -70451624 + AT_rich Low_complexity Low_complexity 1 25 0 248 0 31 0 chr3 157075189 157075221 -70449357 + (CA)n Simple_repeat Simple_repeat 2 34 0 1810 268 53 30 chr3 157075227 157076019 -70448559 - L1MC4a LINE L1 -1736 6072 5263 420 306 92 35 chr3 157076023 157076369 -70448209 - L1MC4a LINE L1 -889 5257 4892 834 186 43 0 chr3 157076369 157076509 -70448069 + FRAM SINE Alu 1 146 -30 309 51 0 0 chr3 157076512 157076551 -70448027 + (TGAA)n Simple_repeat Simple_repeat 3 41 0 553 288 58 82 chr3 157076557 157077391 -70447187 - L1MC4a LINE L1 -1252 4894 4093 924 209 17 0 chr3 157077391 157077563 -70447015 + MER5B DNA MER1_type 1 175 -3 553 288 58 82 chr3 157077563 157077856 -70446722 - L1MC4a LINE L1 -2053 4093 3794 315 283 77 100 chr3 157077967 157078317 -70446261 - L1MC4a LINE L1 -2481 3665 3324 190 0 67 0 chr3 157078419 157078449 -70446129 + (TTTTA)n Simple_repeat Simple_repeat 4 35 0 7606 24 0 3 chr3 157078449 157079798 -70444780 - L1PA3 LINE L1 -13 6142 4796 7411 20 0 0 chr3 157079799 157080658 -70443920 + L1PA3 LINE L1 3938 4796 -1350 371 298 124 38 chr3 157080657 157081600 -70442978 - L1MC4a LINE L1 -2932 3214 2191 * 22 0 0 0 chr3 157081677 157081699 -70442879 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 157082267 157082295 -70442283 + AT_rich Low_complexity Low_complexity 1 28 0 538 204 224 0 chr3 157082598 157082745 -70441833 + MER5A DNA MER1_type 10 189 0 1973 241 46 33 chr3 157082963 157083507 -70441071 + MLT1H1 LTR MaLR 5 555 0 19339 92 13 10 chr3 157083684 157087306 -70437272 - L1PA7 LINE L1 -7 6462 2828 12598 106 12 38 chr3 157087312 157089476 -70435102 - L1PA7 LINE L1 -4293 2168 6 270 128 0 21 chr3 157089480 157089527 -70435051 - L1MB2 LINE L1 -40 6131 6086 408 316 78 5 chr3 157089565 157089758 -70434820 - MIR SINE MIR -2 260 54 908 189 78 19 chr3 157090035 157090241 -70434337 - MER20 DNA MER1_type 0 219 2 447 187 0 56 chr3 157090310 157090417 -70434161 - MIR SINE MIR -10 252 152 1923 222 108 106 chr3 157090982 157092125 -70432453 - L1MC5 LINE L1 -35 7926 6774 2047 144 131 11 chr3 157092125 157092507 -70432071 - MSTA LTR MaLR 0 428 1 1923 222 108 106 chr3 157092507 157092807 -70431771 - L1MC5 LINE L1 -1187 6774 6476 838 230 95 83 chr3 157093054 157093206 -70431372 - L1MC4a LINE L1 -1630 6178 6029 2158 102 7 14 chr3 157093206 157093500 -70431078 + AluSp SINE Alu 1 292 -21 838 230 95 83 chr3 157093500 157093864 -70430714 - L1MC4a LINE L1 -1779 6029 5656 466 282 66 66 chr3 157093879 157094519 -70430059 - L1MEd LINE L1 -815 1675 1002 556 296 122 38 chr3 157096138 157096351 -70428227 + MIR SINE MIR 5 235 -27 25 31 0 0 chr3 157096515 157096547 -70428031 + AT_rich Low_complexity Low_complexity 1 32 0 753 263 8 19 chr3 157097715 157097941 -70426637 - MIR SINE MIR 0 262 40 219 304 143 0 chr3 157100102 157100214 -70424364 + L2 LINE L2 3184 3311 -2 1847 175 42 11 chr3 157101038 157101392 -70423186 - MLT1A1 LTR MaLR 0 365 1 1491 239 88 15 chr3 157101696 157102160 -70422418 + MLT1H LTR MaLR 52 549 0 290 294 110 9 chr3 157102327 157102436 -70422142 + L2 LINE L2 3151 3270 -2 629 295 44 26 chr3 157102727 157102954 -70421624 - MIR SINE MIR -4 258 28 218 341 29 98 chr3 157103338 157103584 -70420994 - L2 LINE L2 -86 3186 2958 786 188 0 0 chr3 157103617 157103750 -70420828 + FLAM_A SINE Alu 1 133 0 1944 164 3 3 chr3 157104161 157104471 -70420107 + AluJo SINE Alu 2 311 -1 22 35 0 0 chr3 157104526 157104555 -70420023 + AT_rich Low_complexity Low_complexity 1 29 0 1353 211 101 28 chr3 157104673 157105108 -70419470 + MLT1C LTR MaLR 1 467 0 24 32 0 0 chr3 157105703 157105734 -70418844 + AT_rich Low_complexity Low_complexity 1 31 0 547 29 0 0 chr3 157106367 157106435 -70418143 - L1PA8 LINE L1 -8 6164 6097 2660 109 3 3 chr3 157106728 157107103 -70417475 + THE1C LTR MaLR 1 375 0 9809 110 45 38 chr3 157107103 157108672 -70415906 + THE1C-int LTR MaLR 1 1580 0 2531 114 11 16 chr3 157108672 157109049 -70415529 + THE1C LTR MaLR 1 375 0 389 76 0 130 chr3 157112501 157112593 -70411985 + L1MA10 LINE L1 6253 6332 -2 1281 147 105 151 chr3 157112655 157113104 -70411474 - THE1C LTR MaLR 0 428 1 271 235 73 15 chr3 157113536 157113604 -70410974 - MIR3 SINE MIR -29 179 108 283 337 0 0 chr3 157114665 157114751 -70409827 - L2 LINE L2 -1 3271 3186 637 270 74 9 chr3 157115226 157115441 -70409137 - MIR SINE MIR 0 262 34 249 328 75 35 chr3 157115655 157115829 -70408749 + L2 LINE L2 2919 3099 -173 1723 189 3 3 chr3 157115829 157116137 -70408441 - AluJb SINE Alu 0 308 1 456 303 118 23 chr3 157116534 157116755 -70407823 + MIR SINE MIR 2 243 -19 1227 238 76 21 chr3 157117480 157117862 -70406716 + LTR16C LTR ERVL 89 491 0 187 319 0 0 chr3 157117872 157117919 -70406659 + L2 LINE L2 3247 3293 -20 21 0 0 0 chr3 157118073 157118094 -70406484 + AT_rich Low_complexity Low_complexity 1 21 0 737 293 43 31 chr3 157120151 157120503 -70404075 - L1MEc LINE L1 -5981 415 60 202 311 0 0 chr3 157120527 157120572 -70404006 + L2 LINE L2 2589 2633 -681 799 308 159 19 chr3 157120585 157121013 -70403565 + L2 LINE L2 2826 3313 0 281 312 249 6 chr3 157121192 157121365 -70403213 + MIR SINE MIR 13 227 -35 763 292 75 19 chr3 157121478 157122249 -70402329 + L1MDa LINE L1 1296 2145 -4493 1120 143 23 46 chr3 157122644 157122861 -70401717 + AluJo SINE Alu 63 274 -38 189 0 0 0 chr3 157122867 157122888 -70401690 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 7773 3 0 0 chr3 157122956 157124033 -70400545 + L1HS LINE L1 5079 6155 0 324 328 42 21 chr3 157124096 157124288 -70400290 + L1MDa LINE L1 2798 2993 -3547 17395 165 34 23 chr3 157124403 157132025 -70392553 - L1MA3 LINE L1 0 7724 17 6402 229 63 23 chr3 157132046 157134014 -70390564 + L1MB8 LINE L1 3084 5351 -1221 10111 40 22 0 chr3 157134014 157136015 -70388563 + L1PA4 LINE L1 4135 6152 -3 6402 229 63 23 chr3 157136015 157137265 -70387313 + L1MB8 LINE L1 5351 6549 -23 3198 257 33 21 chr3 157137275 157138585 -70385993 - L1MDa LINE L1 -2708 3832 2507 207 88 0 0 chr3 157138588 157138622 -70385956 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 5620 18 19 18 chr3 157138622 157139304 -70385274 - L1PA4 LINE L1 -16 6139 5457 2177 48 4 0 chr3 157139304 157139682 -70384896 + L1PA4 LINE L1 5098 5476 -678 717 174 40 49 chr3 157139682 157139906 -70384672 - L1MDa LINE L1 -4042 2498 2277 28055 119 20 60 chr3 157139964 157140746 -70383832 - L1PA7 LINE L1 -3 6151 5339 6597 40 2 0 chr3 157140746 157141541 -70383037 + L1PA4 LINE L1 5357 6155 0 28055 119 20 60 chr3 157141541 157147177 -70377401 - L1PA7 LINE L1 -815 5339 12 3172 153 10 5 chr3 157147181 157147790 -70376788 - L1P LINE L1 -1247 4899 4288 6526 87 2 18 chr3 157147790 157148887 -70375691 + L1PA11 LINE L1 5081 6171 -3 314 318 9 9 chr3 157148915 157149025 -70375553 - MLT1K LTR MaLR -327 261 152 21 0 0 0 chr3 157149198 157149219 -70375359 + AT_rich Low_complexity Low_complexity 1 21 0 7588 135 38 9 chr3 157149285 157150486 -70374092 + L1PA10 LINE L1 4072 5339 -829 275 48 0 24 chr3 157150486 157150528 -70374050 + (CAAA)n Simple_repeat Simple_repeat 4 44 0 7588 135 38 9 chr3 157150528 157151379 -70373199 + L1PA10 LINE L1 5339 6164 -4 298 304 182 47 chr3 157152287 157152467 -70372111 - MIR SINE MIR -31 231 28 293 176 0 0 chr3 157152541 157152592 -70371986 - L2 LINE L2 -1 3312 3262 258 330 30 0 chr3 157152762 157152862 -70371716 - MER103 DNA DNA 0 166 64 194 207 17 0 chr3 157153246 157153304 -70371274 + (TATG)n Simple_repeat Simple_repeat 2 60 0 266 263 13 13 chr3 157153304 157153380 -70371198 + CT-rich Low_complexity Low_complexity 4 79 0 729 292 40 39 chr3 157153578 157154006 -70370572 - L1ME3 LINE L1 -263 5907 5479 1806 128 62 10 chr3 157154113 157154401 -70370177 - AluSg SINE Alu -2 308 6 1335 231 5 62 chr3 157154714 157155103 -70369475 - MLT1A2 LTR MaLR -4 370 4 1935 213 34 0 chr3 157155106 157155514 -70369064 - MLT1A2-int LTR MaLR 0 1735 1314 251 205 128 0 chr3 157155664 157155742 -70368836 - MLT1A2-int LTR MaLR -968 767 680 3424 199 9 17 chr3 157155810 157156396 -70368182 - MLT1A2-int LTR MaLR -632 739 159 1929 119 80 42 chr3 157156396 157156757 -70367821 + THE1C LTR MaLR 1 375 0 3424 199 9 17 chr3 157156757 157156915 -70367663 - MLT1A2-int LTR MaLR -1212 159 1 1190 185 88 73 chr3 157156915 157157299 -70367279 - MLT1B LTR MaLR 0 390 1 312 263 96 6 chr3 157157622 157157778 -70366800 - L1ME4a LINE L1 -1 6120 5951 520 302 79 0 chr3 157157879 157158094 -70366484 - L1ME4a LINE L1 -392 5729 5498 308 170 21 32 chr3 157158180 157158274 -70366304 + CT-rich Low_complexity Low_complexity 4 96 0 2466 67 7 0 chr3 157159467 157159764 -70364814 + AluY SINE Alu 1 299 -12 21246 89 5 6 chr3 157160367 157164245 -70360333 - L1PA7 LINE L1 -3 6151 2281 8583 75 4 2 chr3 157164246 157165498 -70359080 + L1P LINE L1 2288 3542 -2604 3222 61 24 2 chr3 157165599 157166058 -70358520 - L1P3 LINE L1 -432 5722 5254 27 0 0 0 chr3 157166300 157166327 -70358251 + AT_rich Low_complexity Low_complexity 1 27 0 237 122 49 0 chr3 157166976 157167017 -70357561 - THE1C-int LTR MaLR -1537 43 1 1994 119 3 3 chr3 157167017 157167319 -70357259 - THE1C LTR MaLR 0 375 74 256 357 42 49 chr3 157268105 157268248 -70256330 - L2 LINE L2 -9 3263 3122 457 300 52 43 chr3 157268321 157268554 -70256024 + MIR SINE MIR 22 256 -6 2041 140 0 9 chr3 157269346 157269661 -70254917 - AluSx SINE Alu 0 312 1 24572 47 42 2 chr3 157270182 157273270 -70251308 - L1P LINE L1 -2932 3214 4 1110 160 0 0 chr3 157273270 157273457 -70251121 + L1MB8 LINE L1 5791 5977 -201 * 1533 223 101 5 chr3 157273448 157273874 -70250704 - L1M4 LINE L1 -1773 4373 3907 1047 227 96 11 chr3 157273874 157274240 -70250338 + L1M4 LINE L1 4370 4766 -1380 880 204 62 0 chr3 157274477 157274653 -70249925 + MER5A DNA MER1_type 1 187 -2 247 205 161 45 chr3 157274834 157274930 -70249648 + L1ME4a LINE L1 5982 6094 -27 1975 128 7 3 chr3 157274930 157275220 -70249358 - AluSx SINE Alu -21 291 1 247 205 161 45 chr3 157275220 157275235 -70249343 + L1ME4a LINE L1 6094 6106 -15 222 281 78 55 chr3 157277026 157277154 -70247424 + MIR SINE MIR 76 206 -56 301 308 54 8 chr3 157277401 157277531 -70247047 - L3 LINE CR1 -103 1474 1339 2460 77 3 0 chr3 157277540 157277850 -70246728 - AluSp SINE Alu -2 311 1 493 322 95 29 chr3 157278371 157279342 -70245236 - L1M4 LINE L1 -2397 3749 2715 182 191 103 59 chr3 157281806 157281874 -70242704 + L2 LINE L2 2577 2647 -667 577 293 108 24 chr3 157281904 157282191 -70242387 + L2 LINE L2 2989 3299 -14 186 103 0 0 chr3 157282192 157282221 -70242357 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 256 336 8 8 chr3 157283120 157283242 -70241336 + CT-rich Low_complexity Low_complexity 3 124 0 492 314 68 16 chr3 157284915 157285163 -70239415 - MIR SINE MIR 0 262 2 198 0 0 0 chr3 157286661 157286683 -70237895 + (A)n Simple_repeat Simple_repeat 1 22 0 22710 118 17 86 chr3 157287440 157291782 -70232796 + L1PA7 LINE L1 3 4043 -2103 11107 81 8 9 chr3 157291782 157293982 -70230596 + L1PA7 LINE L1 3948 6152 -2 26871 116 166 1 chr3 157294123 157298663 -70225915 + L1P LINE L1 3 5286 -860 4879 206 124 95 chr3 157298665 157299408 -70225170 + L1MD3 LINE L1 5993 6712 -1283 489 17 0 0 chr3 157299408 157299466 -70225112 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 7709 37 1 3 chr3 157299475 157301112 -70223466 + L1PA5 LINE L1 4528 6162 0 4879 206 124 95 chr3 157301112 157301717 -70222861 + L1MD3 LINE L1 6719 7304 -691 2460 65 0 13 chr3 157301717 157302023 -70222555 - AluY SINE Alu -8 303 2 4879 206 124 95 chr3 157302023 157302597 -70221981 + L1MD3 LINE L1 7304 7985 -10 31 0 0 0 chr3 157302900 157302931 -70221647 + AT_rich Low_complexity Low_complexity 1 31 0 503 67 0 135 chr3 157303005 157303094 -70221484 + MADE1 DNA Mariner 4 80 0 489 333 65 34 chr3 157303639 157304095 -70220483 - L1MEc LINE L1 -773 1970 1525 295 268 131 45 chr3 157304376 157304690 -70219888 - HAL1 LINE L1 -1054 1453 1113 2107 148 64 43 chr3 157305008 157305272 -70219306 + MSTA LTR MaLR 1 258 -170 2391 53 0 0 chr3 157305272 157305555 -70219023 + AluY SINE Alu 1 283 -28 185 0 0 39 chr3 157305558 157305584 -70218994 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 2107 148 64 43 chr3 157305584 157305734 -70218844 + MSTA LTR MaLR 259 428 0 215 289 12 36 chr3 157306436 157306519 -70218059 - L2 LINE L2 0 3272 3192 226 296 0 0 chr3 157307164 157307252 -70217326 - L1MEc LINE L1 -4874 1510 1423 732 307 112 53 chr3 157307292 157308436 -70216142 - L1MEc LINE L1 -4902 1470 260 266 344 11 21 chr3 157308886 157308979 -70215599 - L2 LINE L2 -8 3264 3173 474 361 54 44 chr3 157309963 157310459 -70214119 + L2 LINE L2 2164 2664 -650 22 0 0 0 chr3 157313055 157313077 -70211501 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 157313120 157313141 -70211437 + AT_rich Low_complexity Low_complexity 1 21 0 626 326 49 19 chr3 157313479 157313948 -70210630 + L1MCc LINE L1 17 499 -5924 295 95 0 0 chr3 157314047 157314089 -70210489 - L1MC/D LINE L1 -603 5730 5689 1852 138 27 59 chr3 157314090 157314461 -70210117 - Tigger7 DNA MER2_type 0 2487 2129 1620 227 33 3 chr3 157314541 157315107 -70209471 - L1MC/D LINE L1 -721 5449 4861 1773 210 75 91 chr3 157315775 157316705 -70207873 + L1MC5 LINE L1 6564 7485 -476 1712 240 49 52 chr3 157316779 157317392 -70207186 - L1ME3A LINE L1 -5 6165 5555 387 316 67 13 chr3 157317533 157317758 -70206820 - L1ME LINE L1 -367 5803 5567 230 336 0 15 chr3 157317761 157317895 -70206683 - L1ME LINE L1 -644 5520 5389 435 38 0 0 chr3 157317895 157317948 -70206630 + (TG)n Simple_repeat Simple_repeat 2 54 0 245 275 33 39 chr3 157317974 157318156 -70206422 - L1ME LINE L1 -820 5326 5146 205 182 0 91 chr3 157318378 157318433 -70206145 - L2 LINE L2 0 3313 3264 5029 174 15 18 chr3 157318527 157319586 -70204992 + L1MC1 LINE L1 5176 6230 -103 447 92 0 0 chr3 157319586 157319651 -70204927 + (TG)n Simple_repeat Simple_repeat 2 66 0 625 143 0 9 chr3 157319659 157319764 -70204814 - MLT1A2 LTR MaLR 0 374 271 2429 57 0 0 chr3 157319764 157320064 -70204514 - L1PA7 LINE L1 -14 6140 5841 1236 230 18 3 chr3 157320734 157321069 -70203509 - L1P LINE L1 -825 5321 4982 356 131 0 0 chr3 157321069 157321130 -70203448 + L1PA16 LINE L1 6100 6160 -6 680 269 54 124 chr3 157321293 157321951 -70202627 + L2 LINE L2 2694 3313 0 183 100 0 0 chr3 157321988 157322018 -70202560 + (TC)n Simple_repeat Simple_repeat 1 30 0 1519 129 0 5 chr3 157322156 157322366 -70202212 + AluSg/x SINE Alu 86 294 -18 377 246 126 23 chr3 157323968 157324183 -70200395 + L1M4 LINE L1 2928 3164 -2982 622 260 46 92 chr3 157324215 157324584 -70199994 - MER21B LTR ERV1 -149 714 363 295 220 75 0 chr3 157324606 157324706 -70199872 + L1ME2 LINE L1 6040 6154 -8 3538 213 156 34 chr3 157324743 157324845 -70199733 + L1MC4 LINE L1 6360 6448 -1594 2238 133 11 8 chr3 157324845 157325199 -70199379 - THE1A LTR MaLR 0 355 1 11900 87 10 0 chr3 157325199 157326763 -70197815 - THE1A-int LTR MaLR 0 1580 2 2336 100 26 9 chr3 157326764 157327113 -70197465 - THE1A LTR MaLR 0 355 1 3538 213 156 34 chr3 157327113 157328345 -70196233 + L1MC4 LINE L1 6447 7859 -183 2374 93 0 0 chr3 157329592 157329894 -70194684 - AluSc SINE Alu -7 302 1 2275 138 5 10 chr3 157330228 157330626 -70193952 - L1MB2 LINE L1 -12 6159 5764 342 211 0 0 chr3 157330667 157330738 -70193840 - L1MB2 LINE L1 -888 5258 5188 580 154 0 0 chr3 157330919 157331023 -70193555 + L1MA3 LINE L1 6202 6305 0 1171 255 55 61 chr3 157331407 157331866 -70192712 + L1M4 LINE L1 44 499 -6043 3891 153 61 14 chr3 157331903 157332734 -70191844 + L1MB7 LINE L1 5315 6184 0 3397 62 7 7 chr3 157335665 157336113 -70188465 + LTR7 LTR ERV1 1 448 -2 14614 111 8 17 chr3 157336115 157338945 -70185633 + HERVH LTR ERV1 1 2987 -4726 5898 80 2 2 chr3 157338939 157339793 -70184785 + HERVH LTR ERV1 3140 3993 -3720 * 4380 124 0 0 chr3 157339795 157340457 -70184121 + HERVH LTR ERV1 4488 5149 -2564 1346 120 19 0 chr3 157340458 157340674 -70183904 + HERVH LTR ERV1 5600 5819 -1894 452 97 0 14 chr3 157340674 157340746 -70183832 + HERVH LTR ERV1 7324 7394 -319 393 16 0 82 chr3 157340745 157340806 -70183772 + HERVH LTR ERV1 7658 7713 0 * 3230 59 5 7 chr3 157340806 157341249 -70183329 + LTR7 LTR ERV1 1 442 -8 638 251 55 0 chr3 157343799 157343962 -70180616 + MIR SINE MIR 1 172 -90 383 272 201 28 chr3 157343981 157344235 -70180343 - L3 LINE CR1 -109 1468 1171 363 176 168 0 chr3 157344644 157344763 -70179815 + L1MC4 LINE L1 7904 8042 0 267 291 70 20 chr3 157344791 157344990 -70179588 + L1MC/D LINE L1 5682 5890 -1918 269 152 15 61 chr3 157346359 157346425 -70178153 + CT-rich Low_complexity Low_complexity 3 65 0 252 184 0 0 chr3 157348797 157348846 -70175732 + (CACCAT)n Simple_repeat Simple_repeat 6 54 0 319 273 82 0 chr3 157348872 157348982 -70175596 - MIR SINE MIR -65 197 79 258 32 0 0 chr3 157350590 157350621 -70173957 + (CA)n Simple_repeat Simple_repeat 2 32 0 181 279 136 64 chr3 157350656 157350796 -70173782 + L2 LINE L2 2503 2652 -662 435 300 129 8 chr3 157351091 157351354 -70173224 - L1ME LINE L1 -363 5758 5464 315 344 55 22 chr3 157352440 157352623 -70171955 - MIR3 SINE MIR -14 194 6 225 269 15 15 chr3 157353272 157353339 -70171239 - MIR3 SINE MIR -138 70 4 1884 148 7 0 chr3 157353570 157353903 -70170675 + AluSx SINE Alu 5 339 0 662 306 53 61 chr3 157354503 157354899 -70169679 + HAL1 LINE L1 1111 1503 -1004 329 323 11 11 chr3 157354913 157355006 -70169572 + MIR SINE MIR 37 129 -133 257 309 89 16 chr3 157355320 157355443 -70169135 + MIR SINE MIR 66 197 -65 1381 178 4 62 chr3 157356411 157356686 -70167892 + AluJb SINE Alu 33 291 -21 336 220 215 0 chr3 157357024 157357201 -70167377 + HAL1 LINE L1 161 375 -2132 1285 56 0 6 chr3 157357217 157357377 -70167201 + AluY SINE Alu 152 310 -1 227 309 67 57 chr3 157357437 157357647 -70166931 + HAL1 LINE L1 421 632 -1875 702 273 167 23 chr3 157357680 157358244 -70166334 + HAL1 LINE L1 774 1418 -1089 462 229 8 15 chr3 157358468 157358599 -70165979 + HAL1 LINE L1 1558 1687 -820 334 266 92 60 chr3 157358620 157358838 -70165740 + HAL1 LINE L1 1881 2105 -402 361 223 74 51 chr3 157359052 157359227 -70165351 + HAL1 LINE L1 2329 2507 0 565 291 83 12 chr3 157359421 157359758 -70164820 - L1ME4a LINE L1 -238 5883 5523 198 315 124 0 chr3 157360424 157360513 -70164065 - MIR SINE MIR 0 262 163 256 319 22 0 chr3 157360640 157360731 -70163847 + L3 LINE CR1 1376 1468 -109 246 308 66 0 chr3 157361065 157361156 -70163422 - MIR SINE MIR -74 188 92 194 307 0 57 chr3 157361951 157362039 -70162539 + L2 LINE L2 3212 3294 -19 364 255 57 96 chr3 157362075 157362232 -70162346 + MER5A DNA MER1_type 2 152 -37 645 236 110 39 chr3 157362271 157362560 -70162018 - MER58B DNA MER1_type -16 325 6 212 379 81 0 chr3 157362715 157362802 -70161776 - L2 LINE L2 -13 3300 3207 250 240 0 0 chr3 157362891 157362941 -70161637 - MER58B DNA MER1_type -25 316 267 2221 196 24 7 chr3 157364333 157364752 -70159826 + MSTB LTR MaLR 1 426 0 279 276 0 51 chr3 157364908 157365006 -70159572 + MIR SINE MIR 119 211 -51 1609 173 23 0 chr3 157365408 157365668 -70158910 - AluJo SINE Alu -46 266 1 343 335 32 19 chr3 157366036 157366194 -70158384 + MIR SINE MIR 7 166 -96 295 259 63 81 chr3 157367700 157367874 -70156704 + MLT1J LTR MaLR 14 184 -327 493 176 0 11 chr3 157368016 157368107 -70156471 - 5S rRNA rRNA -31 90 1 289 261 166 40 chr3 157368122 157368375 -70156203 + MLT1J LTR MaLR 227 511 0 26 30 0 0 chr3 157372827 157372860 -70151718 + AT_rich Low_complexity Low_complexity 1 33 0 186 43 0 0 chr3 157373214 157373237 -70151341 + (GA)n Simple_repeat Simple_repeat 2 24 0 202 330 22 0 chr3 157373343 157373434 -70151144 + CT-rich Low_complexity Low_complexity 1 93 0 21 0 0 0 chr3 157373694 157373715 -70150863 + AT_rich Low_complexity Low_complexity 1 21 0 391 299 163 18 chr3 157373715 157373936 -70150642 - MIR SINE MIR -1 261 9 2330 90 0 10 chr3 157374284 157374594 -70149984 + AluSc SINE Alu 1 307 -2 1158 203 132 61 chr3 157374638 157375047 -70149531 - L2 LINE L2 0 3313 2876 25 51 0 0 chr3 157376436 157376475 -70148103 + AT_rich Low_complexity Low_complexity 1 39 0 270 313 45 9 chr3 157376779 157376891 -70147687 - MIR3 SINE MIR -12 196 81 2365 222 51 4 chr3 157377015 157377525 -70147053 - MLT1F LTR MaLR -8 534 1 197 363 0 0 chr3 157377545 157377625 -70146953 - L3b LINE CR1 -143 1440 1361 203 296 115 21 chr3 157377716 157377832 -70146746 - MIR SINE MIR -76 132 6 * 360 329 98 9 chr3 157377803 157378128 -70146450 + L2 LINE L2 539 892 -2422 2135 133 107 0 chr3 157378136 157378511 -70146067 + MLT2C2 LTR ERVL 1 415 -49 187 306 93 28 chr3 157378551 157378659 -70145919 + L2 LINE L2 926 1040 -2274 1043 151 54 5 chr3 157378717 157378922 -70145656 - MER2 DNA MER2_type -3 342 128 * 1156 159 5 0 chr3 157378913 157379108 -70145470 - MER2 DNA MER2_type -141 204 9 292 386 35 16 chr3 157379294 157379548 -70145030 + L2 LINE L2 1239 1497 -1817 180 363 65 50 chr3 157379692 157379954 -70144624 - L2 LINE L2 -2564 750 485 620 207 33 7 chr3 157380502 157380652 -70143926 - MLT1A2 LTR MaLR -220 154 1 384 276 5 121 chr3 157381025 157381224 -70143354 + MER5B DNA MER1_type 3 178 0 2029 191 65 22 chr3 157381408 157381854 -70142724 - MLT1C LTR MaLR 0 467 3 364 311 105 18 chr3 157381884 157382161 -70142417 + MLT1I LTR MaLR 109 409 0 268 312 26 0 chr3 157383038 157383115 -70141463 - L2 LINE L2 -3 3269 3191 192 245 0 0 chr3 157383594 157383647 -70140931 + GA-rich Low_complexity Low_complexity 2 54 0 322 339 100 17 chr3 157383843 157384023 -70140555 + MIR3 SINE MIR 14 208 0 221 270 16 16 chr3 157384255 157384318 -70140260 - MIR SINE MIR -105 157 95 29 47 0 0 chr3 157385134 157385177 -70139401 + AT_rich Low_complexity Low_complexity 1 43 0 5497 115 28 33 chr3 157386066 157387015 -70137563 - L1PA15 LINE L1 -1 6815 5842 13125 207 36 46 chr3 157387119 157391287 -70133291 - L1PA15 LINE L1 -1000 5797 1697 1887 152 0 39 chr3 157391287 157391596 -70132982 + AluSx SINE Alu 3 299 -13 13125 207 36 46 chr3 157391596 157393275 -70131303 - L1PA15 LINE L1 -5100 1697 2 272 170 19 0 chr3 157393501 157393554 -70131024 - L1M4 LINE L1 -1206 4940 4887 10346 137 19 69 chr3 157393607 157395705 -70128873 + L1P LINE L1 11 2002 -4144 331 307 76 22 chr3 157395875 157396454 -70128124 - L1M4 LINE L1 -2145 4001 3392 * 4716 241 74 32 chr3 157396450 157396547 -70128031 + L1M4 LINE L1 2927 3019 -3127 6388 129 69 30 chr3 157396547 157397731 -70126847 - Tigger3b DNA MER2_type 0 1231 1 4716 241 74 32 chr3 157397731 157399679 -70124899 + L1M4 LINE L1 3019 5057 -1089 7973 230 35 45 chr3 157399713 157400005 -70124573 + L1P LINE L1 1948 2241 -3905 2431 71 10 0 chr3 157400005 157400302 -70124276 + AluY SINE Alu 1 300 -11 7973 230 35 45 chr3 157400302 157400850 -70123728 + L1P LINE L1 2241 2793 -3353 588 40 27 0 chr3 157400850 157400925 -70123653 - AluY SINE Alu -10 300 224 7973 230 35 45 chr3 157400925 157402729 -70121849 + L1P LINE L1 2793 4642 -1504 20674 76 14 5 chr3 157402732 157408279 -70116299 + L1PA6 LINE L1 552 6163 0 24 0 0 0 chr3 157408320 157408344 -70116234 + AT_rich Low_complexity Low_complexity 1 24 0 385 293 83 22 chr3 157408483 157408664 -70115914 - L1M4 LINE L1 -1587 4559 4368 24 32 0 0 chr3 157408814 157408845 -70115733 + AT_rich Low_complexity Low_complexity 1 31 0 255 277 263 0 chr3 157409176 157409313 -70115265 + L3 LINE CR1 1198 1370 -207 552 135 21 10 chr3 157409984 157410080 -70114498 - MLT1C LTR MaLR 0 467 371 1313 209 104 17 chr3 157410168 157410513 -70114065 - MLT1C LTR MaLR -92 375 1 536 280 90 14 chr3 157410547 157410904 -70113674 - L1ME3A LINE L1 -233 5937 5554 2539 57 3 0 chr3 157410907 157411225 -70113353 + L1PA8 LINE L1 5841 6159 -13 347 219 163 16 chr3 157411680 157411803 -70112775 - L1MC4 LINE L1 0 8042 7902 214 204 54 27 chr3 157411806 157411953 -70112625 + (TTATA)n Simple_repeat Simple_repeat 2 152 0 745 235 127 8 chr3 157411963 157412223 -70112355 - L1MC4 LINE L1 -144 7898 7608 415 236 18 0 chr3 157412301 157412411 -70112167 + LTR43 LTR ERV1 185 296 -306 1796 279 153 5 chr3 157412700 157413471 -70111107 + L2 LINE L2 1655 2539 -775 1098 207 20 118 chr3 157413911 157414302 -70110276 + MLT1A1 LTR MaLR 1 353 -12 1664 183 30 41 chr3 157414728 157415095 -70109483 - MLT1A1 LTR MaLR -2 363 1 967 215 113 45 chr3 157415639 157416062 -70108516 - MLT1C LTR MaLR -19 448 1 266 342 112 43 chr3 157416138 157416583 -70107995 - L2 LINE L2 -715 2599 2124 261 337 10 0 chr3 157416922 157417023 -70107555 - L2 LINE L2 -2 3311 3210 14362 132 18 3 chr3 157417054 157419411 -70105167 - Tigger1 DNA MER2_type 0 2418 26 722 121 0 0 chr3 157419435 157419534 -70105044 - AluSg/x SINE Alu -14 295 197 361 358 88 0 chr3 157419559 157419774 -70104804 - L2 LINE L2 -1037 2277 2044 265 319 108 14 chr3 157420087 157420300 -70104278 + MLT1L LTR MaLR 359 591 -24 2005 92 0 29 chr3 157420512 157420785 -70103793 - AluY SINE Alu -15 296 32 565 267 79 0 chr3 157421474 157421639 -70102939 + MER5B DNA MER1_type 1 178 0 1849 118 17 0 chr3 157421856 157422144 -70102434 + L1M4 LINE L1 5511 5803 -381 24831 36 4 0 chr3 157422152 157425979 -70098599 - L1PA2 LINE L1 -2 6153 2314 16672 32 5 1 chr3 157426079 157428856 -70095722 + L1PA4 LINE L1 3366 6152 -3 313 361 50 29 chr3 157428911 157429191 -70095387 + HAL1 LINE L1 2222 2507 0 226 241 0 0 chr3 157429229 157429287 -70095291 - L1ME3 LINE L1 -2 6160 6103 1713 219 85 97 chr3 157429288 157430382 -70094196 - L1ME3 LINE L1 -102 6060 5004 333 0 0 0 chr3 157430397 157430434 -70094144 + (TC)n Simple_repeat Simple_repeat 2 38 0 333 244 161 28 chr3 157430712 157430892 -70093686 + LTR67 LTR ERVL 352 555 -2 27 49 0 0 chr3 157431244 157431285 -70093293 + AT_rich Low_complexity Low_complexity 1 41 0 198 0 0 0 chr3 157431421 157431443 -70093135 + (T)n Simple_repeat Simple_repeat 1 22 0 189 147 0 0 chr3 157431649 157431683 -70092895 + (TC)n Simple_repeat Simple_repeat 2 35 0 184 279 89 13 chr3 157431761 157431840 -70092738 + L2 LINE L2 3139 3223 -49 606 293 15 39 chr3 157432371 157432576 -70092002 - MIR SINE MIR -48 214 15 232 378 8 0 chr3 157432589 157432708 -70091870 - L2 LINE L2 -1305 2009 1890 3612 108 11 9 chr3 157432753 157433395 -70091183 + L1PB2 LINE L1 5316 6149 -2 277 253 212 10 chr3 157433596 157433695 -70090883 + L2 LINE L2 3154 3272 0 315 305 29 0 chr3 157435020 157435125 -70089453 + LTR37B LTR ERV1 17 124 -344 3497 135 5 26 chr3 157435133 157435239 -70089339 + L1MA5A LINE L1 5426 5533 -764 4339 92 14 5 chr3 157435239 157435858 -70088720 - L1PA10 LINE L1 0 6168 5544 3497 135 5 26 chr3 157435858 157436359 -70088219 + L1MA5A LINE L1 5533 6020 -277 * 11772 181 17 66 chr3 157436358 157437946 -70086632 + L1MA3 LINE L1 1645 3310 -4255 2109 117 0 7 chr3 157437946 157438244 -70086334 + AluY SINE Alu 1 296 -15 11772 181 17 66 chr3 157438244 157439421 -70085157 + L1MA3 LINE L1 3310 4544 -3021 895 152 0 0 chr3 157439421 157439553 -70085025 + AluSq/x SINE Alu 1 132 -180 11772 181 17 66 chr3 157439553 157441173 -70083405 + L1MA3 LINE L1 4544 5797 -1768 5160 124 22 6 chr3 157441192 157442022 -70082556 + L1P3 LINE L1 5 847 -5614 3590 87 8 10 chr3 157442022 157442527 -70082051 + L1PA7 LINE L1 5651 6154 0 5203 135 13 10 chr3 157442530 157444327 -70080251 + L1MA3 LINE L1 5796 7724 0 922 229 11 25 chr3 157444343 157444627 -70079951 + L1MC5 LINE L1 7645 7924 -37 763 139 0 7 chr3 157445412 157445549 -70079029 - L1MA9 LINE L1 -6 6306 6171 252 143 0 0 chr3 157445587 157445629 -70078949 + (TG)n Simple_repeat Simple_repeat 2 43 0 696 191 24 0 chr3 157445655 157445781 -70078797 + FLAM_A SINE Alu 14 142 0 1397 150 8 8 chr3 157445781 157446047 -70078531 + L1MA9 LINE L1 5828 6093 -219 267 322 107 16 chr3 157446632 157446753 -70077825 - MIR SINE MIR -122 140 9 679 169 25 0 chr3 157447403 157447521 -70077057 - MER45A DNA AcHobo 0 178 58 274 366 72 0 chr3 157447549 157447702 -70076876 + L2 LINE L2 3109 3272 0 831 221 52 70 chr3 157448221 157448493 -70076085 - MLT1K LTR MaLR 0 588 322 228 356 70 0 chr3 157448924 157449039 -70075539 - L2 LINE L2 -26 3246 3124 209 314 47 47 chr3 157449162 157449248 -70075330 + L2 LINE L2 3137 3222 -50 182 339 0 0 chr3 157449316 157449372 -70075206 - L2 LINE L2 -16 3297 3242 386 223 11 0 chr3 157450175 157450269 -70074309 + Charlie8 DNA MER1_type 97 191 -2226 2801 210 72 32 chr3 157450298 157451090 -70073488 + MER99 DNA DNA 2 825 -3 797 247 115 17 chr3 157452699 157452934 -70071644 + MIR SINE MIR 5 262 0 231 295 70 31 chr3 157453633 157453762 -70070816 + L1ME LINE L1 5531 5664 -457 704 287 104 13 chr3 157453999 157454229 -70070349 + MIR SINE MIR 11 261 -1 2204 123 0 0 chr3 157454239 157454531 -70070047 - AluSx SINE Alu -20 292 1 708 230 103 19 chr3 157454973 157455234 -70069344 + MER102a DNA MER1_type 45 327 -3 525 122 82 10 chr3 157456767 157456865 -70067713 - MIR SINE MIR -76 186 82 281 270 0 14 chr3 157456886 157456960 -70067618 - L2 LINE L2 -78 3194 3122 776 302 83 72 chr3 157458405 157459480 -70065098 + L1MEd LINE L1 255 1341 -5031 258 295 115 10 chr3 157459471 157459674 -70064904 + L1MEd LINE L1 1259 1504 -4868 * 2258 186 65 35 chr3 157459695 157459887 -70064691 + L1MD1 LINE L1 5114 5299 -943 2409 60 0 10 chr3 157459887 157460187 -70064391 - AluY SINE Alu -14 297 1 2258 186 65 35 chr3 157460187 157460452 -70064126 + L1MD1 LINE L1 5299 5555 -687 2258 165 62 14 chr3 157460452 157460932 -70063646 + L1MD1 LINE L1 5736 6242 0 233 265 0 0 chr3 157460932 157461000 -70063578 + L1MEd LINE L1 3200 3267 -3115 685 301 79 25 chr3 157461016 157461610 -70062968 + L1MEd LINE L1 3306 3931 -2451 864 281 37 16 chr3 157461624 157462045 -70062533 + L1MEd LINE L1 4650 5078 -1304 369 0 0 0 chr3 157462128 157462169 -70062409 + (CA)n Simple_repeat Simple_repeat 2 42 0 772 299 100 26 chr3 157462799 157463190 -70061388 + LTR16B LTR ERVL 37 456 -8 189 121 0 0 chr3 157463369 157463402 -70061176 + (TC)n Simple_repeat Simple_repeat 2 34 0 342 0 0 0 chr3 157463425 157463463 -70061115 + (TG)n Simple_repeat Simple_repeat 2 39 0 21 36 0 0 chr3 157464491 157464519 -70060059 + AT_rich Low_complexity Low_complexity 1 28 0 636 160 46 11 chr3 157464705 157464965 -70059613 + L1MA4A LINE L1 5951 6280 -23 1326 250 58 68 chr3 157465412 157466156 -70058422 - L1ME LINE L1 -3681 2963 2253 7249 126 15 25 chr3 157466156 157467398 -70057180 - Tigger3b DNA MER2_type -1 1230 1 1326 250 58 68 chr3 157467398 157467689 -70056889 - L1ME LINE L1 -4391 2253 1961 1288 109 0 0 chr3 157467689 157467880 -70056698 - AluSg/x SINE Alu 0 308 118 1252 268 55 43 chr3 157467908 157468678 -70055900 - L1ME LINE L1 -4771 1873 1065 2345 83 0 17 chr3 157468678 157468980 -70055598 + AluY SINE Alu 1 297 -14 1252 268 55 43 chr3 157468980 157469033 -70055545 - L1ME LINE L1 -5579 1065 1014 226 387 62 59 chr3 157469341 157469597 -70054981 - L2 LINE L2 -185 3087 2831 265 294 118 24 chr3 157471555 157471725 -70052853 + L1MC4 LINE L1 7494 7679 -363 823 288 66 4 chr3 157472299 157472542 -70052036 + MIR SINE MIR 5 262 0 222 360 228 2 chr3 157472637 157473045 -70051533 + L2 LINE L2 2813 3312 -1 5479 94 11 21 chr3 157473401 157473817 -70050761 + L1MA1 LINE L1 5346 5765 -537 2112 137 28 28 chr3 157473817 157474181 -70050397 - THE1B LTR MaLR 0 364 1 5479 94 11 21 chr3 157474181 157474649 -70049929 + L1MA1 LINE L1 5765 6221 -81 2437 63 16 0 chr3 157475049 157475365 -70049213 + L1PA8 LINE L1 5836 6156 -16 4061 146 112 1 chr3 157475816 157476555 -70048023 - LTR12 LTR ERV1 -1 825 5 1897 159 55 88 chr3 157476571 157477188 -70047390 - pTR5 LTR ERV1 -1094 1344 748 284 345 35 0 chr3 157477188 157477301 -70047277 + L3 LINE CR1 431 547 -1030 392 212 44 44 chr3 157478090 157478203 -70046375 + L3 LINE CR1 638 750 -827 241 269 15 15 chr3 157478350 157478417 -70046161 + L2 LINE L2 3245 3311 -2 188 0 0 69 chr3 157478679 157478708 -70045870 + (TTTTA)n Simple_repeat Simple_repeat 1 27 0 7162 120 29 7 chr3 157478713 157479174 -70045404 - L1PA12 LINE L1 -25 6143 5693 2056 141 3 0 chr3 157479174 157479473 -70045105 - AluSx SINE Alu -12 300 1 7162 120 29 7 chr3 157479473 157481081 -70043497 - L1PA12 LINE L1 -475 5693 4027 5557 168 26 9 chr3 157481080 157482238 -70042340 + L1PA12 LINE L1 2838 4014 -2132 * 237 312 0 13 chr3 157482291 157482368 -70042210 + L3 LINE CR1 771 846 -731 345 332 47 28 chr3 157482767 157482981 -70041597 - HAL1 LINE L1 -216 2291 2074 2644 255 68 30 chr3 157483085 157484152 -70040426 - HAL1 LINE L1 -632 1875 769 430 235 117 12 chr3 157484554 157484716 -70039862 - HAL1 LINE L1 -2295 212 34 184 345 87 48 chr3 157484734 157484940 -70039638 + L2 LINE L2 2860 3073 -199 966 43 0 0 chr3 157486066 157486183 -70038395 + L1PA5 LINE L1 6029 6145 -9 434 70 14 0 chr3 157486533 157486604 -70037974 + (ATG)n Simple_repeat Simple_repeat 3 74 0 1868 224 48 2 chr3 157486835 157487318 -70037260 - L1MB7 LINE L1 -13 6171 5667 400 319 14 28 chr3 157487353 157487569 -70037009 + MLT1H LTR MaLR 45 257 -292 303 171 67 86 chr3 157487660 157487765 -70036813 + MLT1H LTR MaLR 431 533 -16 2451 88 3 0 chr3 157487900 157488240 -70036338 - THE1A LTR MaLR -14 341 1 8238 110 157 0 chr3 157488240 157489606 -70034972 - THE1A-int LTR MaLR 0 1580 1 2679 101 0 0 chr3 157489606 157489961 -70034617 - THE1A LTR MaLR 0 355 1 266 243 211 33 chr3 157490289 157490441 -70034137 - MIR SINE MIR -69 193 15 22 0 0 0 chr3 157491166 157491188 -70033390 + AT_rich Low_complexity Low_complexity 1 22 0 286 179 48 12 chr3 157491653 157491737 -70032841 - MLT1L LTR MaLR -10 605 519 13444 170 22 16 chr3 157492058 157493693 -70030885 - L1PB1 LINE L1 -2 6865 5242 1656 39 5 0 chr3 157493693 157493900 -70030678 - L1PA4 LINE L1 -3 6152 5945 13444 170 22 16 chr3 157493900 157496047 -70028531 - L1PB1 LINE L1 -1625 5242 3049 2453 101 0 0 chr3 157496047 157496354 -70028224 + AluSc SINE Alu 1 307 -2 13444 170 22 16 chr3 157496354 157496607 -70027971 - L1PB1 LINE L1 -3818 3049 2799 16002 115 32 18 chr3 157496610 157499315 -70025263 - L1PB1 LINE L1 -4120 2743 1 441 318 54 34 chr3 157499460 157499938 -70024640 - HAL1 LINE L1 -840 1667 1180 322 305 20 40 chr3 157500322 157500473 -70024105 - L1MEd LINE L1 -5040 1079 932 1068 268 77 22 chr3 157500492 157500858 -70023720 - MLT1G1 LTR MaLR -209 386 1 232 250 29 0 chr3 157501215 157501283 -70023295 - MIR SINE MIR -98 164 95 5133 128 34 8 chr3 157502166 157502654 -70021924 - L1MA8 LINE L1 -1 6290 5769 360 0 0 0 chr3 157502654 157502694 -70021884 + (TG)n Simple_repeat Simple_repeat 1 40 0 5133 128 34 8 chr3 157502694 157503068 -70021510 - L1MA8 LINE L1 -522 5769 5406 415 268 21 0 chr3 157504108 157504250 -70020328 - MER103 DNA DNA -2 164 20 464 315 106 40 chr3 157505169 157505737 -70018841 - MLT1L LTR MaLR -10 605 1 305 70 0 0 chr3 157505799 157505842 -70018736 + MADE1 DNA Mariner 38 80 0 538 286 51 0 chr3 157506111 157506289 -70018289 + MLT1J LTR MaLR 8 194 -317 284 213 106 57 chr3 157506347 157506488 -70018090 - MIR SINE MIR -3 259 112 183 80 0 0 chr3 157507315 157507340 -70017238 + (GGA)n Simple_repeat Simple_repeat 2 26 0 1030 287 54 33 chr3 157508908 157509471 -70015107 - MLT1L LTR MaLR -2 613 1 637 263 12 65 chr3 157510670 157510917 -70013661 + MIR SINE MIR 28 261 -1 659 239 124 54 chr3 157511655 157511969 -70012609 + HAL1 LINE L1 1877 2212 -295 1424 208 103 9 chr3 157512137 157512581 -70011997 + MLT1F LTR MaLR 1 542 0 372 260 50 0 chr3 157512605 157512705 -70011873 - MIR SINE MIR -108 154 50 38905 89 5 6 chr3 157512842 157518878 -70005700 + L1PA4 LINE L1 11 6155 0 2630 64 3 14 chr3 157518878 157519294 -70005284 + L1PA6 LINE L1 5814 6231 0 505 117 0 0 chr3 157519217 157519473 -70005105 + (GAAA)n Simple_repeat Simple_repeat 3 258 0 319 320 63 27 chr3 157520431 157520653 -70003925 + L2 LINE L2 2746 2975 -339 514 276 121 5 chr3 157520819 157521018 -70003560 - MIR SINE MIR -5 257 36 * 564 192 19 45 chr3 157521009 157521165 -70003413 + L2 LINE L2 3162 3313 0 2885 0 0 0 chr3 157521264 157521565 -70003013 + AluYa5 SINE Alu 1 301 -10 2179 38 15 0 chr3 157522077 157522340 -70002238 + L1PA5 LINE L1 5882 6148 -6 187 303 81 78 chr3 157522980 157523264 -70001314 - L2 LINE L2 -15 3257 2973 287 250 0 0 chr3 157524974 157525038 -69999540 + MIR SINE MIR 85 148 -114 204 40 0 0 chr3 157532174 157532199 -69992379 + (CCCTG)n Simple_repeat Simple_repeat 4 28 0 248 262 0 0 chr3 157536234 157536295 -69988283 + T-rich Low_complexity Low_complexity 1 61 0 494 263 56 0 chr3 157538499 157538659 -69985919 - MIR SINE MIR -13 249 81 21 0 0 0 chr3 157539692 157539713 -69984865 + AT_rich Low_complexity Low_complexity 1 21 0 308 188 82 12 chr3 157539994 157540079 -69984499 + MER113 DNA MER1_type? 29 119 -402 313 348 7 19 chr3 157540193 157540348 -69984230 - MIR3 SINE MIR -36 172 20 1208 6 25 6 chr3 157540927 157541084 -69983494 + (GAAA)n Simple_repeat Simple_repeat 2 161 0 302 288 106 23 chr3 157541315 157541447 -69983131 - MIR3 SINE MIR -64 144 2 534 285 15 91 chr3 157541615 157541889 -69982689 + MIR SINE MIR 7 259 -3 397 279 32 53 chr3 157542776 157542966 -69981612 + MIR SINE MIR 66 251 -11 2428 86 0 13 chr3 157543332 157543647 -69980931 - AluSq SINE Alu -2 311 1 1449 165 121 11 chr3 157543665 157543937 -69980641 - AluJo SINE Alu 0 302 1 226 313 22 60 chr3 157543949 157544083 -69980495 - MIR3 SINE MIR -14 194 66 612 284 94 10 chr3 157544824 157545025 -69979553 + L1MD2 LINE L1 5915 6132 -227 285 189 54 0 chr3 157545059 157545133 -69979445 - L1MA8 LINE L1 -1 6290 6213 305 287 111 23 chr3 157545634 157545850 -69978728 - MIR SINE MIR -8 254 20 883 155 22 33 chr3 157546372 157546553 -69978025 + MER5A DNA MER1_type 11 189 0 525 95 17 6 chr3 157546605 157546727 -69977851 + MER53 DNA DNA 2 189 0 373 192 27 0 chr3 157546750 157546823 -69977755 - MER5A DNA MER1_type -80 109 35 334 259 126 61 chr3 157547239 157547484 -69977094 - MIR SINE MIR -2 260 5 562 232 155 16 chr3 157548387 157548581 -69975997 - MIR SINE MIR -13 249 29 522 281 92 62 chr3 157548813 157549573 -69975005 + L1ME LINE L1 4872 5673 -489 5077 194 43 6 chr3 157549573 157550574 -69974004 + MER45B DNA AcHobo 2 1039 -1 522 281 92 62 chr3 157550574 157550721 -69973857 + L1ME LINE L1 5673 5814 -348 28 48 0 0 chr3 157550993 157551035 -69973543 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr3 157551115 157551136 -69973442 + AT_rich Low_complexity Low_complexity 1 21 0 28 79 0 0 chr3 157552289 157552352 -69972226 + AT_rich Low_complexity Low_complexity 1 63 0 222 118 0 0 chr3 157556522 157556556 -69968022 + (TTA)n Simple_repeat Simple_repeat 1 34 0 21 36 0 0 chr3 157556697 157556725 -69967853 + AT_rich Low_complexity Low_complexity 1 28 0 315 325 122 5 chr3 157556844 157557032 -69967546 - MIR SINE MIR -2 260 51 224 59 29 0 chr3 157557083 157557117 -69967461 + (TC)n Simple_repeat Simple_repeat 2 36 0 228 336 44 0 chr3 157557396 157557533 -69967045 + L2 LINE L2 1853 1995 -1319 774 182 7 7 chr3 157557585 157557733 -69966845 - MIR SINE MIR -33 229 82 751 222 92 128 chr3 157558671 157559731 -69964847 + L1MC5 LINE L1 6814 7705 -256 * 1738 241 116 13 chr3 157559729 157560352 -69964226 - HAL1b LINE L1 -78 1270 584 358 309 130 39 chr3 157560508 157560738 -69963840 + MIR SINE MIR 8 258 -4 302 265 179 12 chr3 157561427 157561589 -69962989 - L2 LINE L2 -5 3308 3120 2416 232 114 41 chr3 157561628 157562383 -69962195 - MER21B LTR ERV1 -11 852 43 362 216 14 14 chr3 157562383 157562457 -69962121 - MER21B LTR ERV1 -771 92 19 307 213 43 43 chr3 157562455 157562549 -69962029 - MER21B LTR ERV1 -757 106 13 * 566 318 99 83 chr3 157562601 157563635 -69960943 - L2 LINE L2 -220 3052 2009 847 222 85 32 chr3 157563642 157564090 -69960488 - LTR33 LTR ERVL -19 504 1 213 294 165 5 chr3 157564111 157564329 -69960249 - L2 LINE L2 -1351 1963 1711 358 279 14 50 chr3 157565307 157565362 -69959216 + LTR33 LTR ERVL 3 58 -463 1878 210 86 25 chr3 157565362 157565838 -69958740 + MLT1D LTR MaLR 1 505 0 358 279 14 50 chr3 157565838 157565922 -69958656 + LTR33 LTR ERVL 58 137 -384 744 286 46 0 chr3 157565978 157566174 -69958404 - MER63A DNA MER1_type -4 206 2 512 59 29 0 chr3 157566792 157566860 -69957718 + L1PB2 LINE L1 5779 5848 -303 862 100 0 0 chr3 157566860 157566970 -69957608 - AluSq/x SINE Alu -202 110 1 4393 160 67 6 chr3 157566970 157567758 -69956820 + L1PA8 LINE L1 5336 6171 -1 322 272 0 132 chr3 157567795 157567931 -69956647 - L2 LINE L2 -5 3267 3150 203 275 50 12 chr3 157567967 157568047 -69956531 + MIR SINE MIR 175 257 -5 466 216 56 16 chr3 157568179 157568304 -69956274 - L1ME3 LINE L1 -13 6149 6020 2743 10 0 0 chr3 157569065 157569361 -69955217 - AluYa5 SINE Alu -15 296 1 238 104 229 0 chr3 157569804 157569852 -69954726 - L2 LINE L2 0 3272 3214 1099 299 75 15 chr3 157570681 157571315 -69953263 + L2 LINE L2 2632 3312 -1 733 228 9 141 chr3 157571486 157571575 -69953003 - HAL1 LINE L1 -1 2506 2407 775 195 0 0 chr3 157571575 157571725 -69952853 + FLAM_A SINE Alu 1 150 0 733 228 9 141 chr3 157571725 157572058 -69952520 - HAL1 LINE L1 -100 2407 2137 2085 162 42 21 chr3 157572598 157572980 -69951598 + MLT1B LTR MaLR 1 390 0 476 204 23 8 chr3 157573087 157573219 -69951359 - HAL1 LINE L1 -138 2369 2236 1270 265 163 33 chr3 157573877 157574734 -69949844 - HAL1 LINE L1 -5 2502 1534 1443 144 62 31 chr3 157574735 157574992 -69949586 - AluSx SINE Alu -14 298 34 449 267 31 31 chr3 157574993 157575188 -69949390 - HAL1 LINE L1 -967 1540 1346 226 244 0 81 chr3 157575542 157575628 -69948950 - HAL1 LINE L1 -2329 178 100 1273 178 49 30 chr3 157575743 157576007 -69948571 + L1MB5 LINE L1 5906 6174 0 1598 174 0 11 chr3 157576209 157576490 -69948088 - AluJo SINE Alu -28 284 7 699 297 135 0 chr3 157577045 157577267 -69947311 - MIR SINE MIR -6 256 5 323 233 11 0 chr3 157577781 157577871 -69946707 + L2 LINE L2 2174 2264 -1050 802 240 189 42 chr3 157578314 157578684 -69945894 + Charlie7 DNA MER1_type 87 401 -2211 2342 98 0 0 chr3 157578684 157578981 -69945597 + AluSx SINE Alu 1 297 -15 802 240 189 42 chr3 157578981 157579218 -69945360 + Charlie7 DNA MER1_type 401 861 -1751 2058 122 3 23 chr3 157579396 157579699 -69944879 + AluSq SINE Alu 1 297 -16 533 290 48 30 chr3 157579854 157580188 -69944390 + L1ME LINE L1 3662 4001 -2145 205 333 0 25 chr3 157580190 157580271 -69944307 + (CATA)n Simple_repeat Simple_repeat 3 81 0 3359 92 29 4 chr3 157580646 157581101 -69943477 + L1PA11 LINE L1 5709 6174 0 505 272 104 59 chr3 157581111 157581700 -69942878 + L1ME LINE L1 4443 5046 -1100 671 235 23 77 chr3 157581812 157582072 -69942506 + L1ME LINE L1 5574 5819 -302 1148 115 0 23 chr3 157582073 157582247 -69942331 + L1PB1 LINE L1 5981 6150 -1 354 299 30 2 chr3 157583005 157583150 -69941428 + MIR SINE MIR 34 142 -66 220 284 40 0 chr3 157583353 157583427 -69941151 + CT-rich Low_complexity Low_complexity 6 82 0 256 250 16 0 chr3 157583724 157583788 -69940790 - MLT1J2 LTR MaLR -120 330 266 180 247 258 0 chr3 157584145 157584238 -69940340 - L2 LINE L2 -6 3266 3150 2084 123 0 3 chr3 157584540 157584845 -69939733 + AluSx SINE Alu 1 304 0 874 209 29 6 chr3 157584917 157585089 -69939489 + MER5A DNA MER1_type 1 176 -13 498 251 12 74 chr3 157585300 157585380 -69939198 - MER5B DNA MER1_type -25 153 86 2910 133 19 19 chr3 157585380 157585807 -69938771 + MSTC LTR MaLR 1 427 -1 498 251 12 74 chr3 157585807 157585889 -69938689 - MER5B DNA MER1_type -92 86 1 450 0 0 0 chr3 157586592 157586642 -69937936 + (CA)n Simple_repeat Simple_repeat 1 50 0 476 265 108 12 chr3 157586926 157587092 -69937486 + MIR SINE MIR 81 262 0 202 323 15 0 chr3 157587223 157587288 -69937290 + L2 LINE L2 3247 3312 -1 954 255 58 0 chr3 157587822 157588065 -69936513 - MIR SINE MIR 0 262 6 366 143 39 39 chr3 157588348 157588425 -69936153 + MIR SINE MIR 92 168 -94 495 336 64 14 chr3 157588742 157589025 -69935553 + ERVL LTR ERVL 320 616 -5148 445 310 43 43 chr3 157589146 157589378 -69935200 + ERVL LTR ERVL 814 1045 -4719 6460 25 0 6 chr3 157589759 157590478 -69934100 - L1PA4 LINE L1 0 6155 5441 5592 39 0 0 chr3 157590487 157591159 -69933419 + L1P LINE L1 4700 5371 -775 332 273 62 8 chr3 157591522 157591650 -69932928 + LTR33A LTR ERVL 382 516 -7 2645 167 19 5 chr3 157591825 157592245 -69932333 - MSTB LTR MaLR 0 426 1 1042 245 207 8 chr3 157592353 157592934 -69931644 + LTR50 LTR ERVL 6 795 0 23 0 0 53 chr3 157593263 157593280 -69931298 + AT_rich Low_complexity Low_complexity 1 17 -19 2050 229 80 14 chr3 157593280 157593795 -69930783 - MLT1H LTR MaLR 0 549 1 23 0 0 53 chr3 157593795 157593815 -69930763 + AT_rich Low_complexity Low_complexity 17 36 0 339 259 15 30 chr3 157596215 157596346 -69928232 - LTR16A1 LTR ERVL -4 453 325 342 295 81 57 chr3 157596351 157596561 -69928017 - LTR16C LTR ERVL -275 216 2 330 179 28 159 chr3 157596763 157596908 -69927670 - MIR SINE MIR 0 262 137 225 108 0 0 chr3 157597014 157597051 -69927527 + (CA)n Simple_repeat Simple_repeat 2 38 0 287 295 26 0 chr3 157598184 157598262 -69926316 - L3 LINE CR1 -3 1574 1495 2073 174 12 61 chr3 157598489 157598760 -69925818 + MLT1B LTR MaLR 3 249 -141 2748 152 23 28 chr3 157598760 157599188 -69925390 + MSTB LTR MaLR 1 426 0 2073 174 12 61 chr3 157599188 157599324 -69925254 + MLT1B LTR MaLR 249 390 0 319 299 13 0 chr3 157599499 157599576 -69925002 - L2 LINE L2 -4 3268 3191 217 310 46 86 chr3 157599701 157599800 -69924778 - L2 LINE L2 -400 2914 2825 2498 118 31 11 chr3 157599800 157600157 -69924421 + THE1B LTR MaLR 1 364 0 217 310 46 86 chr3 157600157 157600254 -69924324 - L2 LINE L2 -489 2825 2726 1865 121 73 0 chr3 157600302 157600575 -69924003 - AluSg1 SINE Alu -16 293 1 473 206 22 0 chr3 157600836 157600928 -69923650 - Tigger5 DNA MER2_type 0 2323 2230 284 122 0 0 chr3 157600933 157600974 -69923604 - Tigger5 DNA MER2_type -2269 54 14 485 284 37 5 chr3 157601077 157601267 -69923311 - L1MC4a LINE L1 -1939 5869 5674 364 312 43 22 chr3 157601267 157601405 -69923173 - MIR SINE MIR -119 143 3 983 230 56 31 chr3 157601423 157601815 -69922763 - L1MEc LINE L1 -5041 1355 954 1116 193 116 64 chr3 157601822 157601907 -69922671 + MER2 DNA MER2_type 1 80 -265 2277 147 0 35 chr3 157601907 157602255 -69922323 - MER1B DNA MER1_type -1 336 1 1116 193 116 64 chr3 157602255 157602496 -69922082 + MER2 DNA MER2_type 80 344 -1 1973 251 31 7 chr3 157602496 157603214 -69921364 - L1MEc LINE L1 -5453 943 160 1687 184 59 20 chr3 157603211 157603569 -69921009 + L1MC3 LINE L1 7397 7768 -17 * 412 165 41 21 chr3 157603578 157603675 -69920903 + MER97c DNA MER1_type? 81 179 -911 554 264 68 6 chr3 157604021 157604184 -69920394 + MER5B DNA MER1_type 3 175 -3 232 337 23 0 chr3 157604191 157604277 -69920301 + MER5A DNA MER1_type 69 156 -33 2318 41 41 7 chr3 157604493 157604783 -69919795 + AluY SINE Alu 1 300 -11 265 319 0 0 chr3 157604937 157605009 -69919569 - L3 LINE CR1 -126 1451 1380 1962 148 12 102 chr3 157605128 157605539 -69919039 + MLT1A2 LTR MaLR 1 374 0 247 192 0 41 chr3 157606040 157606113 -69918465 + T-rich Low_complexity Low_complexity 1 70 0 217 286 0 16 chr3 157607079 157607142 -69917436 + CT-rich Low_complexity Low_complexity 5 66 0 246 256 78 35 chr3 157608562 157608780 -69915798 - L1ME4a LINE L1 -106 6015 5764 198 91 0 0 chr3 157609095 157609128 -69915450 + (TC)n Simple_repeat Simple_repeat 1 33 0 264 277 170 0 chr3 157609194 157609288 -69915290 + L2 LINE L2 3196 3305 -8 355 361 53 50 chr3 157610196 157610534 -69914044 + L2 LINE L2 2914 3252 -20 23 0 0 0 chr3 157611547 157611570 -69913008 + AT_rich Low_complexity Low_complexity 1 23 0 194 417 33 17 chr3 157612138 157612258 -69912320 - L2 LINE L2 -76 3196 3075 441 318 48 34 chr3 157612518 157612761 -69911817 - MIR SINE MIR -6 256 3 1959 156 37 67 chr3 157613215 157613696 -69910882 + L1MB8 LINE L1 5712 6178 0 321 89 0 0 chr3 157614285 157614330 -69910248 + (TG)n Simple_repeat Simple_repeat 2 46 0 1484 238 149 16 chr3 157615463 157615905 -69908673 - MLT1H1 LTR MaLR -19 536 36 26 0 0 0 chr3 157615968 157615994 -69908584 + AT_rich Low_complexity Low_complexity 1 26 0 195 42 0 0 chr3 157617744 157617768 -69906810 + (TTCA)n Simple_repeat Simple_repeat 2 25 0 1953 176 33 88 chr3 157618013 157618502 -69906076 - MLT1C LTR MaLR 0 467 6 3933 57 0 4 chr3 157618770 157619240 -69905338 - L1PA7 LINE L1 -3 6151 5684 180 0 114 0 chr3 157620213 157620248 -69904330 + T-rich Low_complexity Low_complexity 2 40 0 267 93 0 0 chr3 157620772 157620815 -69903763 + (TTGG)n Simple_repeat Simple_repeat 2 44 0 2433 96 0 0 chr3 157621325 157621637 -69902941 - AluSq SINE Alu -1 312 1 1936 167 45 28 chr3 157622630 157622989 -69901589 + MLT1A1 LTR MaLR 1 365 0 295 290 112 34 chr3 157624145 157624414 -69900164 + L2 LINE L2 2845 3134 -179 351 160 34 45 chr3 157624677 157624775 -69899803 - MIR SINE MIR -48 160 64 2509 202 94 88 chr3 157624955 157625776 -69898802 + LTR1B LTR ERV1 1 826 0 1062 179 5 20 chr3 157627410 157627606 -69896972 - MLT1A1 LTR MaLR -172 193 1 6005 200 135 59 chr3 157627610 157628013 -69896565 - MLT1A1-int LTR MaLR -4 1731 1360 5328 138 9 15 chr3 157628013 157628801 -69895777 + LTR39 LTR ERV1 1 783 0 6005 200 135 59 chr3 157628801 157630005 -69894573 - MLT1A1-int LTR MaLR -375 1360 2 296 204 0 0 chr3 157630007 157630056 -69894522 - MLT1A1 LTR MaLR 0 365 317 6680 162 37 5 chr3 157630128 157632174 -69892404 + L1M1 LINE L1 13 2247 -5318 205 387 62 59 chr3 157633097 157633353 -69891225 + L2 LINE L2 2831 3087 -185 1475 284 62 52 chr3 157633661 157633714 -69890864 + L1ME LINE L1 1014 1065 -5477 2355 70 3 20 chr3 157633714 157634016 -69890562 - AluY SINE Alu -14 297 1 1475 284 62 52 chr3 157634016 157634786 -69889792 + L1ME LINE L1 1065 1674 -4868 1286 109 0 0 chr3 157634814 157635005 -69889573 + AluSg/x SINE Alu 118 308 0 1671 248 59 69 chr3 157635005 157635296 -69889282 + L1ME LINE L1 1961 2253 -4391 7890 126 15 25 chr3 157635296 157636538 -69888040 + Tigger3b DNA MER2_type 1 1230 -1 1671 248 59 69 chr3 157636538 157637282 -69887296 + L1ME LINE L1 2253 2963 -3681 701 160 46 11 chr3 157637729 157637989 -69886589 - L1MA4A LINE L1 -23 6280 5951 21 36 0 0 chr3 157638175 157638203 -69886375 + AT_rich Low_complexity Low_complexity 1 28 0 342 0 0 0 chr3 157639231 157639269 -69885309 + (CA)n Simple_repeat Simple_repeat 2 39 0 189 121 0 0 chr3 157639292 157639325 -69885253 + (GA)n Simple_repeat Simple_repeat 2 34 0 890 299 100 26 chr3 157639504 157639895 -69884683 - LTR16B LTR ERVL -8 456 37 369 0 0 0 chr3 157640525 157640566 -69884012 + (TG)n Simple_repeat Simple_repeat 2 42 0 1015 269 42 21 chr3 157640649 157641070 -69883508 - L1M4 LINE L1 -1304 4842 4414 880 295 65 29 chr3 157641084 157641664 -69882914 - L1M4 LINE L1 -2451 3695 3095 269 261 0 0 chr3 157641694 157641763 -69882815 - L1M4 LINE L1 -3115 3031 2963 * 2415 170 92 17 chr3 157641762 157642506 -69882072 - L1MD1 LINE L1 0 6242 5415 2243 70 0 11 chr3 157642507 157642813 -69881765 + AluY SINE Alu 1 303 0 874 209 29 6 chr3 157642885 157643057 -69881521 + MER5A DNA MER1_type 1 176 -13 498 251 12 74 chr3 157643268 157643348 -69881230 - MER5B DNA MER1_type -25 153 86 2910 133 19 19 chr3 157643348 157643775 -69880803 + MSTC LTR MaLR 1 427 -1 498 251 12 74 chr3 157643775 157643857 -69880721 - MER5B DNA MER1_type -92 86 1 432 0 0 0 chr3 157644562 157644610 -69879968 + (CA)n Simple_repeat Simple_repeat 1 48 0 476 265 108 12 chr3 157644894 157645060 -69879518 + MIR SINE MIR 81 262 0 202 323 15 0 chr3 157645191 157645256 -69879322 + L2 LINE L2 3247 3312 -1 954 255 58 0 chr3 157645790 157646033 -69878545 - MIR SINE MIR 0 262 6 366 143 39 39 chr3 157646316 157646393 -69878185 + MIR SINE MIR 92 168 -94 495 336 64 14 chr3 157646710 157646993 -69877585 + ERVL LTR ERVL 320 616 -5148 445 310 43 43 chr3 157647114 157647346 -69877232 + ERVL LTR ERVL 814 1045 -4719 3374 54 32 3 chr3 157647791 157648283 -69876295 + L1PA8A LINE L1 5187 5689 -442 3800 205 21 9 chr3 157648298 157649102 -69875476 + L1P LINE L1 11 824 -5322 1212 303 25 56 chr3 157649825 157650340 -69874238 + LTR33A LTR ERVL 1 499 -24 392 212 68 41 chr3 157650387 157650533 -69874045 - MIR SINE MIR 0 262 113 1499 183 29 88 chr3 157650938 157651347 -69873231 - MLT1B LTR MaLR -1 389 5 1614 82 9 27 chr3 157651807 157652026 -69872552 + L1PA8 LINE L1 5951 6165 -7 252 341 94 26 chr3 157652027 157652335 -69872243 - L2 LINE L2 -550 2764 2436 444 211 11 0 chr3 157703493 157703583 -69820995 - MER81 DNA DNA 0 114 24 25 0 0 28 chr3 157703703 157703714 -69820864 + AT_rich Low_complexity Low_complexity 1 11 -24 1701 167 7 14 chr3 157703714 157704002 -69820576 + AluJb SINE Alu 1 286 -26 25 0 0 28 chr3 157704002 157704026 -69820552 + AT_rich Low_complexity Low_complexity 11 35 0 27 73 0 0 chr3 157704192 157704247 -69820331 + GC_rich Low_complexity Low_complexity 1 55 0 437 221 19 19 chr3 157704296 157704450 -69820128 + FRAM SINE Alu 10 163 -13 517 227 55 0 chr3 157704616 157704750 -69819828 - FLAM_A SINE Alu 0 140 1 3290 172 13 5 chr3 157705600 157706216 -69818362 + L1MA6 LINE L1 5674 6294 -6 350 374 0 0 chr3 157706251 157706366 -69818212 - L1MDa LINE L1 -5848 692 578 1740 221 77 19 chr3 157706375 157707097 -69817481 - L1MEc LINE L1 -3307 2908 2184 6761 75 37 0 chr3 157707106 157708532 -69816046 - L1PA7 LINE L1 0 6154 4684 225 65 0 0 chr3 157708532 157708563 -69816015 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 6761 75 37 0 chr3 157708563 157708744 -69815834 - L1PA7 LINE L1 -1470 4684 4511 9462 88 2 0 chr3 157708744 157710138 -69814440 + L1P LINE L1 2829 4225 -1921 404 217 83 25 chr3 157710261 157710418 -69814160 - L1MEc LINE L1 -4413 1983 1818 875 171 55 0 chr3 157710440 157710604 -69813974 - L1MC1 LINE L1 -18 6315 6143 372 299 52 15 chr3 157710604 157710738 -69813840 - L1MEc LINE L1 -5138 1067 929 28 71 0 0 chr3 157710864 157710920 -69813658 + AT_rich Low_complexity Low_complexity 1 56 0 247 372 9 9 chr3 157711115 157711228 -69813350 - L1MEc LINE L1 -5497 708 596 230 235 44 66 chr3 157711267 157711403 -69813175 - L1MEc LINE L1 -5985 220 88 369 319 84 31 chr3 157711407 157711789 -69812789 + L1MC4a LINE L1 5525 5926 -1882 399 293 30 100 chr3 157711922 157712222 -69812356 - L1M4 LINE L1 -2161 3985 3707 354 267 68 63 chr3 157712565 157712756 -69811822 - L1ME3 LINE L1 -19 6143 5952 426 20 0 0 chr3 157713359 157713410 -69811168 + (TG)n Simple_repeat Simple_repeat 2 52 0 256 274 47 19 chr3 157714883 157714989 -69809589 + L2 LINE L2 2420 2528 -786 203 174 0 65 chr3 157716012 157716058 -69808520 - L3 LINE CR1 -5 1572 1530 275 280 37 0 chr3 157716326 157716433 -69808145 - L1M4 LINE L1 -1299 4847 4737 611 316 71 28 chr3 157716577 157717074 -69807504 - L1M4 LINE L1 -1605 4541 4024 196 336 77 35 chr3 157717076 157717219 -69807359 - L2 LINE L2 -1069 2245 2097 608 167 0 0 chr3 157717379 157717469 -69807109 + AluS SINE Alu 3 92 -220 221 188 21 0 chr3 157717537 157717585 -69806993 + (TGGA)n Simple_repeat Simple_repeat 1 49 0 353 330 18 59 chr3 157717717 157717938 -69806640 + L1ME LINE L1 5549 5760 -361 3932 196 46 7 chr3 157718148 157719057 -69805521 + L1PA13 LINE L1 3018 3962 -2184 39650 63 9 2 chr3 157719057 157724713 -69799865 + L1PA5 LINE L1 1 5688 -466 2399 38 41 0 chr3 157724713 157725004 -69799574 + AluY SINE Alu 1 303 -8 39650 63 9 2 chr3 157725004 157725467 -69799111 + L1PA5 LINE L1 5688 6146 -8 7419 153 16 3 chr3 157725490 157727094 -69797484 + L1PA13 LINE L1 3950 5567 -594 2426 10 0 0 chr3 157727102 157727390 -69797188 + L1HS LINE L1 5868 6155 0 3764 138 8 2 chr3 157727416 157728027 -69796551 + L1PA13 LINE L1 5538 6152 -11 857 262 94 30 chr3 157728604 157729070 -69795508 + L1MC/D LINE L1 5254 5749 -2059 30 27 0 0 chr3 157729305 157729342 -69795236 + AT_rich Low_complexity Low_complexity 1 37 0 24418 134 13 18 chr3 157729412 157730677 -69793901 + L1PA8A LINE L1 4 1274 -5172 183 100 0 0 chr3 157730677 157730707 -69793871 + (CAA)n Simple_repeat Simple_repeat 1 30 0 24418 134 13 18 chr3 157730707 157735867 -69788711 + L1PA8A LINE L1 1274 6439 -7 1325 175 6 9 chr3 157735867 157736182 -69788396 + Charlie5 DNA MER1_type 2217 2530 -82 233 278 93 60 chr3 157736252 157736468 -69788110 + L1M4 LINE L1 4715 4937 -1209 335 285 40 50 chr3 157736475 157736675 -69787903 - L1ME3A LINE L1 -8 6162 5965 339 217 87 0 chr3 157736779 157736871 -69787707 - L1ME3A LINE L1 -256 5914 5815 2348 221 38 35 chr3 157736883 157737517 -69787061 - L1ME1 LINE L1 -5 6161 5526 21 36 0 0 chr3 157737548 157737576 -69787002 + AT_rich Low_complexity Low_complexity 1 28 0 668 198 50 3 chr3 157737580 157737660 -69786918 - MER33 DNA MER1_type -2360 225 150 1756 159 43 0 chr3 157737660 157737937 -69786641 - AluJb SINE Alu -23 289 1 668 198 50 3 chr3 157737937 157738079 -69786499 - MER33 DNA MER1_type -2435 150 1 252 0 0 0 chr3 157738327 157738355 -69786223 + (TTA)n Simple_repeat Simple_repeat 3 30 0 6756 69 0 0 chr3 157738355 157739544 -69785034 - L1PA7 LINE L1 -18 6136 4950 2819 98 2 0 chr3 157739544 157739972 -69784606 - L1P LINE L1 -1106 5040 4612 1662 214 113 7 chr3 157739968 157740652 -69783926 - L1ME1 LINE L1 -74 6092 4855 * 785 196 6 6 chr3 157740676 157740844 -69783734 + MLT1A2 LTR MaLR 207 374 0 579 141 0 0 chr3 157740845 157740937 -69783641 + MLT1A2-int LTR MaLR 2 93 -1278 180 0 0 0 chr3 157743791 157743811 -69780767 + (ATG)n Simple_repeat Simple_repeat 1 20 0 491 294 72 17 chr3 157743821 157744001 -69780577 - MIR SINE MIR -10 252 63 1143 191 13 4 chr3 157745070 157745295 -69779283 + L1PA15 LINE L1 5939 6165 0 506 218 170 74 chr3 157745765 157745994 -69778584 - MIR SINE MIR -10 252 2 23 0 0 0 chr3 157747553 157747576 -69777002 + AT_rich Low_complexity Low_complexity 1 23 0 242 325 32 32 chr3 157748594 157748717 -69775861 - L3b LINE CR1 -57 1526 1404 320 243 98 52 chr3 157748724 157748897 -69775681 + L2 LINE L2 2923 3103 -169 200 235 59 29 chr3 157749029 157749097 -69775481 - L3b LINE CR1 -183 1400 1331 413 312 113 34 chr3 157750787 157751114 -69773464 + L2 LINE L2 2384 2736 -578 274 114 29 14 chr3 157751135 157751205 -69773373 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 1831 141 10 26 chr3 157752148 157752460 -69772118 + AluSx SINE Alu 6 312 0 821 150 0 0 chr3 157752476 157752603 -69771975 + FRAM SINE Alu 21 147 -29 687 48 39 0 chr3 157752603 157753018 -69771560 + (GAAA)n Simple_repeat Simple_repeat 1 431 0 197 321 94 0 chr3 157753720 157753826 -69770752 - L2 LINE L2 -157 3115 3000 242 77 0 0 chr3 157753940 157753979 -69770599 - Alu SINE Alu -4 297 259 2269 121 3 0 chr3 157753979 157754284 -69770294 - AluSx SINE Alu -6 306 1 2236 112 0 0 chr3 157755168 157755464 -69769114 - AluSg SINE Alu -14 296 1 1828 178 7 0 chr3 157755467 157755759 -69768819 - AluJo SINE Alu -18 294 1 6584 85 12 7 chr3 157757447 157759050 -69765528 - L1PA8 LINE L1 -2 6170 4563 241 308 81 54 chr3 157759197 157759382 -69765196 + L2 LINE L2 2997 3186 -86 245 298 7 13 chr3 157759437 157759525 -69765053 + GA-rich Low_complexity Low_complexity 1 87 0 519 331 111 11 chr3 157760073 157760432 -69764146 - LTR16A LTR ERVL 0 450 56 789 178 0 13 chr3 157760570 157760727 -69763851 + MLT1B LTR MaLR 5 159 -231 1021 90 8 0 chr3 157760728 157760861 -69763717 - AluSp/q SINE Alu -19 294 161 907 157 6 25 chr3 157760861 157761050 -69763528 + MLT1B LTR MaLR 175 357 -33 1267 212 65 53 chr3 157761050 157761390 -69763188 - MER2 DNA MER2_type 0 344 1 907 157 6 25 chr3 157761390 157761424 -69763154 + MLT1B LTR MaLR 357 390 0 4633 314 59 37 chr3 157761498 157764367 -69760211 - MERVL LTR ERVL -201 5284 2480 1212 206 18 14 chr3 157764367 157764590 -69759988 + MER58A DNA MER1_type 1 224 0 4633 314 59 37 chr3 157764590 157765565 -69759013 - MERVL LTR ERVL -3005 2480 1528 1415 108 0 0 chr3 157765565 157765750 -69758828 - L1PA15 LINE L1 0 6165 5981 4633 314 59 37 chr3 157765750 157766999 -69757579 - MERVL LTR ERVL -3957 1528 1 249 295 133 0 chr3 157767001 157767106 -69757472 - LTR16A LTR ERVL -2 448 330 437 321 81 19 chr3 157767124 157767333 -69757245 - LTR16A LTR ERVL -221 229 8 1131 265 35 91 chr3 157767364 157767829 -69756749 + MLT1J LTR MaLR 27 464 -47 2190 105 7 7 chr3 157767829 157768158 -69756420 - AluSx SINE Alu 0 329 1 1131 265 35 91 chr3 157768158 157768204 -69756374 + MLT1J LTR MaLR 464 511 0 204 182 0 0 chr3 157768669 157768713 -69755865 + T-rich Low_complexity Low_complexity 1 44 0 345 304 0 0 chr3 157768826 157768918 -69755660 + MIR SINE MIR 54 145 -63 316 259 99 30 chr3 157769563 157769694 -69754884 - MIR SINE MIR -2 260 121 331 301 11 0 chr3 157769695 157769788 -69754790 + MLT1I LTR MaLR 50 143 -266 502 245 162 9 chr3 157769788 157770017 -69754561 + MIR SINE MIR 6 250 -12 2357 104 0 10 chr3 157770045 157770353 -69754225 - AluSg SINE Alu -5 305 1 351 269 208 0 chr3 157771591 157771721 -69752857 - MIR SINE MIR -41 221 65 849 250 34 34 chr3 157772020 157772256 -69752322 - MIR SINE MIR -19 243 8 566 109 11 11 chr3 157772375 157772467 -69752111 - MLT1D LTR MaLR 0 505 414 1294 190 139 44 chr3 157772736 157773125 -69751453 - MLT1E2 LTR MaLR -109 517 92 457 311 41 0 chr3 157773254 157773376 -69751202 + L2 LINE L2 3143 3269 -3 2109 107 24 0 chr3 157773849 157774140 -69750438 + AluSg SINE Alu 13 310 0 1834 126 5 1 chr3 157774157 157774177 -69750401 + L1MDa LINE L1 2532 2550 -3990 18920 138 9 6 chr3 157774177 157777893 -69746685 - L1PA10 LINE L1 -5 6163 2435 1834 126 5 1 chr3 157777893 157778159 -69746419 + L1PA10 LINE L1 2550 2823 -3717 1164 260 58 58 chr3 157778307 157778769 -69745809 + MLT1G LTR MaLR 84 545 -45 239 152 33 57 chr3 157779174 157779365 -69745213 + (TTATA)n Simple_repeat Simple_repeat 1 186 0 292 256 21 81 chr3 157779370 157779655 -69744923 + L1ME LINE L1 2752 3019 -3127 676 220 69 57 chr3 157779659 157780795 -69743783 - L1MC5 LINE L1 -36 7925 6719 854 260 121 101 chr3 157780858 157782399 -69742179 + L1ME LINE L1 3132 4704 -1442 256 341 43 37 chr3 157782550 157782714 -69741864 + MIR SINE MIR 56 220 -42 2877 159 4 13 chr3 157785844 157786308 -69738270 - MER66B LTR ERV1 0 486 27 2371 222 103 47 chr3 157786534 157787323 -69737255 + MER97a DNA MER1_type? 60 892 -2 311 301 87 58 chr3 157788280 157788692 -69735886 + L1ME LINE L1 5352 5775 -346 4517 79 2 3 chr3 157788733 157789301 -69735277 - L1PB1 LINE L1 0 6151 5585 1134 131 0 2 chr3 157789810 157790047 -69734531 - AluSc SINE Alu -27 282 2 197 43 0 0 chr3 157790065 157790088 -69734490 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 7982 23 0 0 chr3 157790092 157791372 -69733206 - L1PA3 LINE L1 -3 6152 4876 9350 29 0 1 chr3 157791372 157792459 -69732119 + L1PA3 LINE L1 3788 4873 -1273 485 230 25 62 chr3 157793089 157793250 -69731328 + MER5B DNA MER1_type 17 171 -7 261 265 133 54 chr3 157793359 157793559 -69731019 - MIR SINE MIR -36 226 6 293 133 33 33 chr3 157793894 157793954 -69730624 + MER5B DNA MER1_type 11 70 -108 1256 178 83 0 chr3 157793975 157794264 -69730314 + MER33 DNA MER1_type 1 302 -22 819 144 14 111 chr3 157794287 157794495 -69730083 + MER53 DNA DNA 2 189 0 468 248 168 12 chr3 157794529 157794690 -69729888 + MER5A DNA MER1_type 4 189 0 260 284 12 12 chr3 157794861 157794942 -69729636 + (TGAA)n Simple_repeat Simple_repeat 1 81 0 375 259 16 67 chr3 157795472 157795598 -69728980 - L1MC4a LINE L1 -297 5824 5820 1758 108 98 41 chr3 157795598 157795893 -69728685 - AluSx SINE Alu 0 312 1 375 259 16 67 chr3 157795893 157796005 -69728573 - L1MC4a LINE L1 -301 5820 5704 537 288 22 105 chr3 157796020 157796333 -69728245 + L2 LINE L2 2967 3253 -19 231 204 0 0 chr3 157796340 157796389 -69728189 + GA-rich Low_complexity Low_complexity 1 49 0 743 316 88 54 chr3 157796561 157797485 -69727093 + L2 LINE L2 1569 2523 -791 528 216 18 0 chr3 157797820 157797931 -69726647 + LTR67 LTR ERVL 445 557 0 696 307 81 45 chr3 157797931 157798477 -69726101 + L2 LINE L2 2524 3078 -194 7368 119 14 17 chr3 157798539 157800232 -69724346 - L1MA2 LINE L1 0 6304 4610 2107 130 0 0 chr3 157800232 157800547 -69724031 - AluSx SINE Alu 0 315 1 7368 119 14 17 chr3 157800547 157800801 -69723777 - L1MA2 LINE L1 -1694 4610 4357 * 8613 186 11 7 chr3 157800800 157802311 -69722267 - L1M1 LINE L1 -5854 1711 195 43157 52 9 0 chr3 157802312 157808402 -69716176 + L1PA5 LINE L1 2 6145 -9 243 88 0 0 chr3 157808402 157808436 -69716142 + (TA)n Simple_repeat Simple_repeat 1 34 0 278 179 95 24 chr3 157808441 157808525 -69716053 - L1MC4 LINE L1 -1339 6703 6614 258 234 0 43 chr3 157808445 157808539 -69716039 + L1MC4 LINE L1 6614 6703 -1339 * 1117 148 20 5 chr3 157808553 157808749 -69715829 - L1M1 LINE L1 -7358 207 9 326 302 95 8 chr3 157808758 157808884 -69715694 + L2 LINE L2 3136 3272 0 635 234 12 42 chr3 157808914 157809081 -69715497 + MIR SINE MIR 101 262 0 499 218 171 20 chr3 157809825 157810077 -69714501 + L1ME4a LINE L1 5725 6014 -107 2017 132 9 47 chr3 157810139 157810481 -69714097 - L1MC1 LINE L1 -11 6322 5994 28 0 0 26 chr3 157810973 157810999 -69713579 + AT_rich Low_complexity Low_complexity 1 27 -11 1760 163 3 14 chr3 157810999 157811288 -69713290 - AluJb SINE Alu -26 286 1 28 0 0 26 chr3 157811288 157811300 -69713278 + AT_rich Low_complexity Low_complexity 27 38 0 469 222 11 0 chr3 157811419 157811509 -69713069 + MER81 DNA DNA 24 114 0 4052 154 73 19 chr3 157812256 157813093 -69711485 - Tigger3(Golem) DNA MER2_type -1 3028 2147 3392 150 64 13 chr3 157813301 157814005 -69710573 - Tigger3b DNA MER2_type -492 740 1 318 154 41 41 chr3 157814630 157814753 -69709825 + (TA)n Simple_repeat Simple_repeat 2 124 0 6162 173 17 17 chr3 157816127 157817753 -69706825 - L1M2 LINE L1 -563 5749 4124 569 208 42 0 chr3 157817743 157817887 -69706691 - L1M4 LINE L1 -811 5335 5186 * 292 136 0 0 chr3 157817986 157818030 -69706548 + MLT1E3 LTR MaLR 108 151 -473 1201 279 87 65 chr3 157818033 157818401 -69706177 - L1MEd LINE L1 -4902 1217 858 1454 204 127 117 chr3 157818401 157819017 -69705561 - MLT1E2 LTR MaLR -4 622 1 1201 279 87 65 chr3 157819017 157819219 -69705359 - L1MEd LINE L1 -5261 858 662 621 204 204 50 chr3 157819219 157819400 -69705178 - MER63A DNA MER1_type -1 209 1 1201 279 87 65 chr3 157819400 157819780 -69704798 - L1MEd LINE L1 -5457 662 361 186 224 0 0 chr3 157819956 157820005 -69704573 + (CA)n Simple_repeat Simple_repeat 1 49 0 692 244 32 35 chr3 157820422 157820638 -69703940 - MIR SINE MIR -48 214 2 3644 192 19 2 chr3 157820743 157821384 -69703194 - MER82 DNA MER2_type 0 653 2 291 28 0 0 chr3 157823528 157823564 -69701014 + (TTGG)n Simple_repeat Simple_repeat 2 37 0 306 247 165 7 chr3 157824039 157824175 -69700403 - MIR SINE MIR -50 212 59 1127 61 0 0 chr3 157824396 157824527 -69700051 - AluY SINE Alu -179 132 2 185 306 0 0 chr3 157824553 157824602 -69699976 - MIR SINE MIR -73 135 87 357 186 43 0 chr3 157825953 157826023 -69698555 - L2 LINE L2 0 3313 3241 1056 191 5 28 chr3 157826070 157826285 -69698293 - MER20 DNA MER1_type -7 212 3 310 363 18 6 chr3 157826333 157826504 -69698074 - L2 LINE L2 -215 3057 2885 256 234 16 0 chr3 157826726 157826790 -69697788 - MIR SINE MIR 0 262 198 28 29 0 0 chr3 157826819 157826854 -69697724 + AT_rich Low_complexity Low_complexity 1 35 0 2010 111 50 7 chr3 157826896 157827176 -69697402 + AluSx SINE Alu 1 292 -20 706 229 36 18 chr3 157827201 157827367 -69697211 - MIR SINE MIR -74 188 20 229 254 123 29 chr3 157827479 157827617 -69696961 + L1ME4a LINE L1 4696 4846 -1300 53 17 0 0 chr3 157827766 157827826 -69696752 + AT_rich Low_complexity Low_complexity 1 60 0 269 159 0 0 chr3 157827917 157827961 -69696617 - L2 LINE L2 -6 3307 3264 2765 53 12 12 chr3 157828249 157828589 -69695989 - L1PA7 LINE L1 -1 6153 5814 659 263 133 37 chr3 157828669 157829046 -69695532 + L1ME4a LINE L1 5491 5903 -218 4108 75 10 6 chr3 157830172 157830682 -69693896 + L1PA8A LINE L1 5611 6122 -9 21 36 0 0 chr3 157830682 157830710 -69693868 + AT_rich Low_complexity Low_complexity 1 28 0 192 143 0 0 chr3 157831233 157831275 -69693303 + (TG)n Simple_repeat Simple_repeat 2 43 0 2237 97 3 0 chr3 157831328 157831640 -69692938 + AluSx SINE Alu 1 312 0 1755 181 3 0 chr3 157831650 157831937 -69692641 + AluSx SINE Alu 1 288 -24 308 296 49 74 chr3 157832124 157832327 -69692251 - MIR3 SINE MIR -6 202 5 215 295 40 81 chr3 157832548 157832697 -69691881 + MIR SINE MIR 21 163 -99 23 86 0 0 chr3 157834017 157834075 -69690503 + AT_rich Low_complexity Low_complexity 1 58 0 205 265 0 0 chr3 157836285 157836334 -69688244 - L2 LINE L2 -2 3311 3263 496 185 9 46 chr3 157836349 157836457 -69688121 - MLT1J2 LTR MaLR -2 448 345 288 318 54 34 chr3 157836459 157836607 -69687971 - MLT1I LTR MaLR -163 246 96 258 219 0 0 chr3 157837057 157837121 -69687457 + GA-rich Low_complexity Low_complexity 3 66 0 1574 183 7 33 chr3 157837851 157838152 -69686426 + AluJo SINE Alu 1 293 -19 22 0 0 0 chr3 157838152 157838174 -69686404 + AT_rich Low_complexity Low_complexity 1 22 0 707 241 48 21 chr3 157838593 157838738 -69685840 + FRAM SINE Alu 2 150 -16 22 0 0 0 chr3 157838745 157838767 -69685811 + AT_rich Low_complexity Low_complexity 1 22 0 248 331 81 31 chr3 157839118 157839278 -69685300 - MIR SINE MIR -75 187 20 191 209 23 0 chr3 157839702 157839745 -69684833 + MIR SINE MIR 100 143 -65 2309 110 0 7 chr3 157839777 157840085 -69684493 + AluSx SINE Alu 1 306 -6 197 248 276 19 chr3 157840650 157840755 -69683823 - MIR3 SINE MIR -62 146 15 1492 184 77 74 chr3 157841113 157841341 -69683237 - MLT1A1 LTR MaLR 0 365 134 2833 3 0 0 chr3 157841341 157841641 -69682937 - AluYa5 SINE Alu -11 300 1 1492 184 77 74 chr3 157841641 157841776 -69682802 - MLT1A1 LTR MaLR -231 134 1 383 219 10 31 chr3 157842661 157842757 -69681821 + MER5B DNA MER1_type 79 172 -6 443 291 61 24 chr3 157843917 157844082 -69680496 + MIR SINE MIR 1 171 -91 21 0 0 0 chr3 157844962 157844983 -69679595 + AT_rich Low_complexity Low_complexity 1 21 0 423 269 25 8 chr3 157845336 157845455 -69679123 + MER5C DNA MER1_type 4 124 -200 257 264 141 33 chr3 157845769 157845890 -69678688 + L2 LINE L2 3169 3302 -11 332 338 0 20 chr3 157846278 157846426 -69678152 + MIR3 SINE MIR 64 208 0 743 179 0 86 chr3 157847034 157847185 -69677393 + FLAM_C SINE Alu 1 138 -5 217 276 0 52 chr3 157847435 157847493 -69677085 + L2 LINE L2 3204 3258 -14 324 259 204 9 chr3 157848191 157848299 -69676279 - L2 LINE L2 0 3313 3185 662 228 0 0 chr3 157848707 157848821 -69675757 - MER81 DNA DNA 0 114 1 2419 83 3 0 chr3 157849371 157849671 -69674907 + AluSg SINE Alu 1 301 -9 695 296 60 4 chr3 157849685 157849935 -69674643 - LTR16A1 LTR ERVL -7 450 187 540 236 14 34 chr3 157850125 157850273 -69674305 + Charlie8 DNA MER1_type 127 271 -2146 274 260 27 0 chr3 157850337 157850410 -69674168 + Charlie8 DNA MER1_type 2343 2417 0 593 297 78 22 chr3 157850466 157850698 -69673880 + MIR SINE MIR 18 262 0 2365 102 0 0 chr3 157851067 157851370 -69673208 - AluSx SINE Alu -9 303 1 476 258 25 0 chr3 157851866 157851986 -69672592 + L2 LINE L2 3191 3313 0 1972 132 39 0 chr3 157852163 157852444 -69672134 - AluSx SINE Alu -20 292 1 197 360 22 34 chr3 157853034 157853123 -69671455 + L3b LINE CR1 1427 1514 -69 1126 191 14 32 chr3 157853172 157853392 -69671186 + MER20 DNA MER1_type 4 219 0 474 301 17 17 chr3 157853409 157853585 -69670993 + MIR3 SINE MIR 30 205 -3 474 238 29 0 chr3 157853822 157853927 -69670651 + MER81 DNA DNA 1 108 -6 22 0 0 0 chr3 157854866 157854888 -69669690 + AT_rich Low_complexity Low_complexity 1 22 0 1905 119 13 30 chr3 157855145 157855447 -69669131 + AluJb SINE Alu 3 299 -13 626 216 45 0 chr3 157855613 157855748 -69668830 - FLAM_A SINE Alu 0 140 1 451 331 0 7 chr3 157857064 157857200 -69667378 + MIR SINE MIR 23 157 -105 589 311 84 48 chr3 157857229 157857621 -69666957 - MLT1K LTR MaLR -27 561 156 271 307 13 27 chr3 157858256 157858331 -69666247 + MIR SINE MIR 20 93 -115 268 261 162 0 chr3 157859175 157859286 -69665292 + L1ME4a LINE L1 5593 5721 -400 309 226 63 38 chr3 157859409 157859568 -69665010 + L1ME4a LINE L1 5959 6121 0 3076 120 2 25 chr3 157860432 157860864 -69663714 - MSTC LTR MaLR -3 425 4 549 274 39 7 chr3 157861028 157861181 -69663397 - MIR SINE MIR -15 247 90 519 226 20 0 chr3 157861181 157861283 -69663295 - MER81 DNA DNA 0 114 11 251 303 22 11 chr3 157861286 157861375 -69663203 - MIR SINE MIR -168 94 5 311 273 0 11 chr3 157861423 157861511 -69663067 + GA-rich Low_complexity Low_complexity 2 88 0 22 35 0 0 chr3 157861571 157861600 -69662978 + AT_rich Low_complexity Low_complexity 1 29 0 216 0 0 0 chr3 157862424 157862448 -69662130 + (A)n Simple_repeat Simple_repeat 1 24 0 3198 251 52 25 chr3 157862730 157863750 -69660828 + L1ME LINE L1 142 1189 -5016 599 254 136 13 chr3 157863754 157863990 -69660588 + L1ME LINE L1 1531 1795 -4601 285 320 48 31 chr3 157865595 157865948 -69658630 + L1MEd LINE L1 715 1073 -5132 324 276 108 14 chr3 157866192 157866406 -69658172 + L1MEd LINE L1 1415 1703 -873 411 191 57 19 chr3 157867171 157867276 -69657302 + MLT1L LTR MaLR 110 218 -397 4440 122 58 4 chr3 157867285 157867992 -69656586 - L1MC1 LINE L1 0 6333 5589 320 233 115 101 chr3 157868193 157868316 -69656262 + MLT1L LTR MaLR 374 494 -121 2409 98 0 0 chr3 157868316 157868622 -69655956 - AluSx SINE Alu -6 306 1 320 233 115 101 chr3 157868622 157868708 -69655870 + MLT1L LTR MaLR 494 615 0 22 0 0 0 chr3 157868962 157868984 -69655594 + AT_rich Low_complexity Low_complexity 1 22 0 184 188 0 42 chr3 157869780 157869828 -69654750 - L2 LINE L2 -4 3309 3264 387 332 71 5 chr3 157869899 157870095 -69654483 - MIR SINE MIR -31 231 23 282 228 118 29 chr3 157870175 157870311 -69654267 + MIR SINE MIR 71 218 -44 381 206 47 9 chr3 157871289 157871396 -69653182 + L1MB8 LINE L1 6065 6175 -3 303 269 134 15 chr3 157873307 157873441 -69651137 - MIR3 SINE MIR -55 153 4 832 182 4 9 chr3 157873503 157874204 -69650374 + (TGG)n Simple_repeat Simple_repeat 1 698 0 1743 163 50 13 chr3 157874228 157874528 -69650050 + AluJb SINE Alu 1 311 -1 2414 103 0 0 chr3 157876084 157876394 -69648184 + AluSx SINE Alu 1 310 -2 5006 182 39 14 chr3 157877488 157879349 -69645229 + L1MB2 LINE L1 4260 6169 -2 389 290 87 34 chr3 157879360 157879898 -69644680 + L1ME3A LINE L1 4758 5324 -822 2447 234 85 85 chr3 157879945 157880786 -69643792 + L1MC5 LINE L1 6277 7134 -827 2365 90 0 3 chr3 157880786 157881086 -69643492 + AluSg SINE Alu 1 299 -11 2447 234 85 85 chr3 157881086 157881884 -69642694 + L1MC5 LINE L1 7134 7931 -30 309 291 74 74 chr3 157881890 157882175 -69642403 + L1ME3A LINE L1 5312 5596 -525 467 336 28 23 chr3 157882186 157882400 -69642178 + MIR SINE MIR 20 234 -28 331 227 196 41 chr3 157882419 157882613 -69641965 + L1ME3A LINE L1 5618 5841 -280 1704 180 242 14 chr3 157882885 157883375 -69641203 + MLT2B3 LTR ERVL 1 520 0 812 276 48 36 chr3 157883590 157883920 -69640658 - LTR16C LTR ERVL -8 483 150 1498 231 293 0 chr3 157884033 157884500 -69640078 - MER52A LTR ERV1 -1151 604 1 982 299 21 10 chr3 157884500 157884791 -69639787 + L1M3b LINE L1 468 761 -5520 * 1230 290 36 73 chr3 157884771 157885361 -69639217 + L1M3b LINE L1 624 1191 -5090 850 239 67 67 chr3 157885463 157885803 -69638775 + L1MC5 LINE L1 7172 7514 -447 1955 140 31 3 chr3 157885803 157886089 -69638489 + AluSx SINE Alu 1 294 -18 850 239 67 67 chr3 157886089 157886108 -69638470 + L1MC5 LINE L1 7513 7531 -430 376 251 30 78 chr3 157886191 157886358 -69638220 + L1ME3A LINE L1 5962 6120 -50 34 0 0 0 chr3 157886378 157886412 -69638166 + AT_rich Low_complexity Low_complexity 1 34 0 2284 114 0 0 chr3 157886417 157886715 -69637863 + AluSx SINE Alu 2 299 -13 1513 183 0 8 chr3 157886851 157887102 -69637476 + AluJo SINE Alu 1 249 -63 399 167 0 0 chr3 157887324 157887384 -69637194 + MLT1J LTR MaLR 1 60 -451 266 120 8 248 chr3 157887558 157887586 -69636992 + MER21B LTR ERV1 1 34 -829 1590 181 60 0 chr3 157887586 157887867 -69636711 + AluJb SINE Alu 1 298 -14 266 120 8 248 chr3 157887867 157887927 -69636651 + MER21B LTR ERV1 34 57 -806 1534 110 50 0 chr3 157887927 157888145 -69636433 - MER30 DNA MER1_type 0 230 2 266 120 8 248 chr3 157888145 157888172 -69636406 + MER21B LTR ERV1 57 89 -774 393 164 192 67 chr3 157888184 157888250 -69636328 + MER21B LTR ERV1 8 64 -799 2212 133 65 24 chr3 157888250 157888665 -69635913 + MSTB1 LTR MaLR 1 432 0 393 164 192 67 chr3 157888665 157888702 -69635876 + MER21B LTR ERV1 64 124 -739 583 92 0 0 chr3 157888816 157888892 -69635686 + MER21B LTR ERV1 142 217 -646 1415 199 0 4 chr3 157889011 157889262 -69635316 - AluSx SINE Alu -50 262 13 750 236 116 20 chr3 157889269 157889562 -69635016 + L1MC4a LINE L1 5620 5940 -1868 1954 144 28 0 chr3 157889858 157890149 -69634429 + AluSg SINE Alu 1 299 -11 2339 87 7 3 chr3 157890293 157890591 -69633987 + AluSg SINE Alu 1 299 -11 1572 190 35 10 chr3 157890781 157891071 -69633507 - AluJo SINE Alu -12 300 4 392 310 58 33 chr3 157891082 157891443 -69633135 + L1MC4a LINE L1 4901 5270 -876 711 204 68 29 chr3 157891452 157891658 -69632920 + L1MC4a LINE L1 5617 5830 -1978 * 2368 130 62 25 chr3 157891654 157892081 -69632497 + L1MB8 LINE L1 5675 6124 -60 2339 102 0 22 chr3 157892081 157892396 -69632182 + AluSc SINE Alu 1 308 -1 2368 130 62 25 chr3 157892396 157892452 -69632126 + L1MB8 LINE L1 6124 6176 -8 356 184 81 11 chr3 157892417 157892504 -69632074 + L1MC4a LINE L1 5812 5904 -1904 * 1621 128 26 108 chr3 157892504 157892855 -69631723 + THE1C LTR MaLR 1 322 -53 1171 201 143 39 chr3 157892955 157893339 -69631239 - MLT1D LTR MaLR -77 428 5 2555 135 48 19 chr3 157893847 157894263 -69630315 + MSTA LTR MaLR 1 428 0 454 255 51 19 chr3 157894296 157894453 -69630125 - MER103 DNA DNA -3 163 2 2497 73 0 3 chr3 157894917 157895218 -69629360 - AluSc SINE Alu -9 300 1 2115 89 45 10 chr3 157895371 157895663 -69628915 - AluSg SINE Alu -8 302 1 2239 126 0 0 chr3 157895665 157895967 -69628611 - AluSq SINE Alu -10 303 2 6437 72 14 54 chr3 157895986 157896953 -69627625 - SVA Other Other 0 1386 458 2317 88 0 3 chr3 157897128 157897425 -69627153 - AluY SINE Alu -15 296 1 415 282 188 26 chr3 157897480 157898010 -69626568 - L1 LINE L1 -1954 4192 3559 2198 95 34 3 chr3 157898010 157898306 -69626272 - AluSp SINE Alu -8 305 1 415 282 188 26 chr3 157898306 157898387 -69626191 - L1 LINE L1 -2587 3559 3492 597 173 31 12 chr3 157898393 157898555 -69626023 + CT-rich Low_complexity Low_complexity 4 168 0 219 186 0 0 chr3 157898567 157898610 -69625968 + CT-rich Low_complexity Low_complexity 4 46 0 1669 174 17 10 chr3 157898794 157899092 -69625486 - AluJo SINE Alu -12 300 1 2126 128 0 3 chr3 157899142 157899438 -69625140 + AluSx SINE Alu 1 295 -17 2410 59 0 7 chr3 157899442 157899731 -69624847 + AluY SINE Alu 1 287 -24 2164 94 10 3 chr3 157899767 157900055 -69624523 + AluSc SINE Alu 1 290 -19 2009 114 0 81 chr3 157900075 157900211 -69624367 + AluSx SINE Alu 1 146 -166 2336 91 0 3 chr3 157900211 157900508 -69624070 + AluSp SINE Alu 1 296 -17 2009 114 0 81 chr3 157900508 157900705 -69623873 + AluSx SINE Alu 146 307 -5 2337 73 13 10 chr3 157901176 157901477 -69623101 + AluY SINE Alu 1 302 -9 267 321 0 0 chr3 157901774 157901858 -69622720 + L2 LINE L2 3186 3269 -3 2263 115 0 13 chr3 157902095 157902407 -69622171 + AluSq SINE Alu 1 308 -5 1712 171 0 29 chr3 157903507 157903816 -69620762 + AluJb SINE Alu 1 300 -12 286 228 0 11 chr3 157904082 157904174 -69620404 + (TTTAA)n Simple_repeat Simple_repeat 5 95 0 492 196 26 72 chr3 157904668 157904821 -69619757 + L1MB8 LINE L1 4967 5112 -1034 * 1576 211 30 30 chr3 157904816 157905170 -69619408 + L1MB8 LINE L1 5769 6125 -53 2285 125 0 0 chr3 157905170 157905473 -69619105 - AluSx SINE Alu -4 308 6 1576 211 30 30 chr3 157905473 157905517 -69619061 + L1MB8 LINE L1 6124 6167 -11 923 160 216 0 chr3 157905763 157905957 -69618621 - MER46A DNA MER2_type 0 236 1 2482 71 0 0 chr3 157905979 157906276 -69618302 + AluY SINE Alu 1 297 -14 367 217 87 65 chr3 157906588 157906726 -69617852 - MER103 DNA DNA -7 159 19 194 350 192 8 chr3 157906857 157907117 -69617461 + L2 LINE L2 2423 2730 -584 285 322 105 56 chr3 157907203 157907594 -69616984 + L2 LINE L2 2863 3272 0 2284 113 0 3 chr3 157908195 157908504 -69616074 + AluSq SINE Alu 1 308 -5 2422 86 0 7 chr3 157908767 157909069 -69615509 + AluSq SINE Alu 1 300 -13 190 241 60 48 chr3 157909192 157909206 -69615372 - L2 LINE L2 -213 3059 3047 1940 162 0 19 chr3 157909206 157909514 -69615064 + AluJb SINE Alu 1 302 -10 190 241 60 48 chr3 157909514 157909582 -69614996 - L2 LINE L2 -225 3047 2976 432 283 27 38 chr3 157909696 157909880 -69614698 + MIR SINE MIR 63 244 -18 23 92 0 0 chr3 157910007 157910072 -69614506 + AT_rich Low_complexity Low_complexity 1 65 0 2236 117 0 3 chr3 157910182 157910482 -69614096 + AluSx SINE Alu 2 300 -12 470 177 38 108 chr3 157910938 157911096 -69613482 + L1MC5 LINE L1 7796 7942 -19 451 359 79 6 chr3 157911238 157911556 -69613022 + LTR16B LTR ERVL 124 464 0 280 170 0 0 chr3 157915013 157915066 -69609512 - L2 LINE L2 0 3313 3261 254 297 136 0 chr3 157915084 157915202 -69609376 - MIR3 SINE MIR -45 163 30 240 344 43 11 chr3 157916136 157916322 -69608256 + MIR SINE MIR 56 247 -15 326 191 0 15 chr3 157918609 157918677 -69605901 - MER112 DNA MER1_type -186 74 8 2739 139 9 25 chr3 157918679 157919119 -69605459 + Tigger2a DNA MER2_type 1 433 -1 229 281 0 0 chr3 157919901 157919958 -69604620 + (TGAA)n Simple_repeat Simple_repeat 1 57 0 245 267 0 0 chr3 157920283 157920343 -69604235 + MER113 DNA MER1_type? 457 516 -5 314 206 15 0 chr3 157922297 157922365 -69602213 + L1PB1 LINE L1 127 195 -6668 * 10807 114 40 11 chr3 157922350 157924210 -69600368 + L1PB1 LINE L1 620 2426 -4436 476 49 0 86 chr3 157924210 157924291 -69600287 - L1PA3 LINE L1 0 6155 6082 10807 114 40 11 chr3 157924291 157925343 -69599235 + L1PB1 LINE L1 2426 3752 -3110 1859 81 112 0 chr3 157925343 157925603 -69598975 + AluSg SINE Alu 1 289 -21 10807 114 40 11 chr3 157925603 157925678 -69598900 + L1PB1 LINE L1 3752 3823 -3039 5736 84 8 0 chr3 157925798 157926552 -69598026 + L1PB1 LINE L1 6107 6866 -1 194 31 0 62 chr3 157926585 157926617 -69597961 + (CATA)n Simple_repeat Simple_repeat 2 31 0 212 279 38 0 chr3 157927517 157927596 -69596982 - L2 LINE L2 -40 3232 3151 544 229 62 50 chr3 157927611 157927790 -69596788 - MER5A DNA MER1_type -8 181 1 324 266 18 37 chr3 157928087 157928196 -69596382 + MER5B DNA MER1_type 72 178 0 * 597 240 19 39 chr3 157928191 157928345 -69596233 + MER5A DNA MER1_type 1 151 -38 575 231 6 23 chr3 157928411 157928584 -69595994 - MER5B DNA MER1_type -8 170 1 821 156 12 46 chr3 157928590 157928763 -69595815 - MER5A DNA MER1_type 0 189 23 454 295 45 29 chr3 157929024 157929268 -69595310 + L1MC4a LINE L1 5760 6007 -1801 299 307 24 24 chr3 157929904 157930031 -69594547 + MIR SINE MIR 36 162 -100 328 297 17 19 chr3 157930383 157930537 -69594041 + MIR SINE MIR 1 156 -62 264 208 52 78 chr3 157932403 157932480 -69592098 + MLT1J LTR MaLR 110 184 -327 239 264 55 11 chr3 157932517 157932608 -69591970 + MLT1L LTR MaLR 347 441 -174 275 242 62 99 chr3 157933310 157933471 -69591107 + MIR SINE MIR 44 198 -64 2124 28 0 24 chr3 157934459 157934714 -69589864 - L1PA3 LINE L1 -1188 4958 4710 7791 28 0 2 chr3 157934714 157935910 -69588668 + L1PA3 LINE L1 4962 6155 0 353 303 124 10 chr3 157936703 157936993 -69587585 + L1M4 LINE L1 4733 5055 -1091 1018 196 29 0 chr3 157937480 157937684 -69586894 - MER63A DNA MER1_type 0 210 1 1905 127 31 17 chr3 157939504 157939826 -69584752 + AluJb SINE Alu 1 312 0 1881 124 81 0 chr3 157940524 157940797 -69583781 - AluSg SINE Alu -15 295 1 234 175 175 0 chr3 157940968 157941025 -69583553 + MIR SINE MIR 73 139 -123 2027 113 0 4 chr3 157941036 157941310 -69583268 + AluSx SINE Alu 1 273 -39 315 161 0 0 chr3 157941333 157941389 -69583189 + GA-rich Low_complexity Low_complexity 2 57 0 193 333 0 0 chr3 157941567 157941615 -69582963 + L2 LINE L2 3214 3261 -11 402 262 207 6 chr3 157941733 157941897 -69582681 - MIR SINE MIR -26 236 40 10805 100 134 1 chr3 157942397 157944045 -69580533 - Tigger1 DNA MER2_type -551 1867 1 735 199 85 14 chr3 157944729 157944940 -69579638 + MIR SINE MIR 37 262 0 2371 75 0 31 chr3 157945169 157945489 -69579089 + AluSg SINE Alu 1 310 0 599 264 48 9 chr3 157945950 157946177 -69578401 + L1ME4a LINE L1 5652 5887 -234 321 243 191 0 chr3 157946194 157946346 -69578232 + L1ME4a LINE L1 5939 6119 -2 2005 157 0 6 chr3 157946568 157946880 -69577698 + AluJb SINE Alu 1 310 -2 273 318 39 50 chr3 157947056 157947235 -69577343 - MIR3 SINE MIR -2 206 30 1344 111 11 5 chr3 157947527 157947717 -69576861 - AluSx SINE Alu -121 191 1 226 255 59 33 chr3 157947840 157947993 -69576585 - L1MCa LINE L1 -5055 1371 1215 356 294 75 81 chr3 157947995 157948315 -69576263 - L1MCa LINE L1 -5226 1381 1064 2137 128 0 0 chr3 157948344 157948642 -69575936 + AluSx SINE Alu 5 302 -10 1044 104 0 0 chr3 157948679 157948813 -69575765 - L1PA10 LINE L1 -23 6145 6012 1698 111 41 0 chr3 157948820 157949063 -69575515 + AluSx SINE Alu 56 308 -4 24 32 0 0 chr3 157949323 157949354 -69575224 + AT_rich Low_complexity Low_complexity 1 31 0 2203 68 0 41 chr3 157949385 157949725 -69574853 + AluSg SINE Alu 2 329 0 2155 101 50 3 chr3 157949903 157950200 -69574378 + AluSx SINE Alu 1 311 -1 388 194 157 9 chr3 157950716 157950824 -69573754 - L1ME3 LINE L1 -2 6160 6037 1692 148 19 58 chr3 157950824 157951149 -69573429 + AluJb SINE Alu 1 312 0 948 191 22 0 chr3 157951149 157951332 -69573246 + L1MC4 LINE L1 7700 7886 -156 388 272 131 35 chr3 157951372 157951574 -69573004 + LTR33A LTR ERVL 44 236 -287 725 216 26 21 chr3 157951724 157951918 -69572660 + HAL1b LINE L1 503 697 -651 257 319 80 7 chr3 157951919 157952057 -69572521 - L2 LINE L2 -192 3121 2974 621 327 20 50 chr3 157952752 157953028 -69571550 + L2 LINE L2 2985 3253 -19 392 0 21 0 chr3 157953028 157953076 -69571502 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 621 327 20 50 chr3 157953076 157953096 -69571482 + L2 LINE L2 3253 3272 0 2844 192 79 32 chr3 157953217 157953870 -69570708 - L1MC4 LINE L1 -188 7854 7164 2103 141 13 0 chr3 157953870 157954176 -69570402 - AluSx SINE Alu -2 310 1 2844 192 79 32 chr3 157954176 157954230 -69570348 - L1MC4 LINE L1 -878 7164 7114 1560 184 0 46 chr3 157954331 157954657 -69569921 - AluJb SINE Alu -1 311 1 194 341 24 12 chr3 157954829 157954914 -69569664 + MIR SINE MIR 28 113 -149 2165 126 3 0 chr3 157954926 157955228 -69569350 - AluSx SINE Alu -9 303 1 2597 61 0 6 chr3 157955406 157955718 -69568860 - AluSp SINE Alu -3 310 1 1648 127 0 0 chr3 157956104 157956325 -69568253 - AluSx SINE Alu -87 225 5 314 294 82 34 chr3 157956678 157956824 -69567754 + LTR16C LTR ERVL 88 240 -251 249 280 21 32 chr3 157956921 157957014 -69567564 + LTR16C LTR ERVL 372 463 -28 288 301 162 52 chr3 157957028 157957257 -69567321 - L2 LINE L2 -4 3268 3015 356 173 55 82 chr3 157957478 157957588 -69566990 - MER113 DNA MER1_type? -411 110 4 293 286 12 0 chr3 157957768 157957852 -69566726 - L2 LINE L2 -676 2638 2554 216 0 0 0 chr3 157957956 157957980 -69566598 + (CA)n Simple_repeat Simple_repeat 1 24 0 464 247 177 16 chr3 157958120 157958306 -69566272 - MIR SINE MIR -10 252 37 21 0 0 0 chr3 157958891 157958912 -69565666 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 157958992 157959016 -69565562 + GC_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr3 157959763 157959795 -69564783 + AT_rich Low_complexity Low_complexity 1 32 0 293 361 93 19 chr3 157959832 157960048 -69564530 + L3 LINE CR1 1318 1549 -28 2476 88 0 7 chr3 157961666 157961974 -69562604 - AluSq SINE Alu -7 306 1 419 313 68 43 chr3 157962134 157962485 -69562093 - L2 LINE L2 -24 3289 2930 184 224 0 20 chr3 157962532 157962581 -69561997 + L2 LINE L2 3216 3263 -9 4640 181 70 47 chr3 157962745 157963660 -69560918 - L1MD2 LINE L1 -2 6357 5464 2273 89 0 0 chr3 157963660 157963941 -69560637 - AluY SINE Alu -10 301 21 1573 172 67 0 chr3 157963951 157964219 -69560359 - AluJb SINE Alu -26 286 1 4640 181 70 47 chr3 157964219 157964345 -69560233 - L1MD2 LINE L1 -903 5456 5334 2106 134 7 0 chr3 157964345 157964652 -69559926 - AluSq SINE Alu -4 309 1 1962 131 7 17 chr3 157964659 157964950 -69559628 - AluSx SINE Alu -24 288 1 4640 181 70 47 chr3 157964950 157965046 -69559532 - L1MD2 LINE L1 -1030 5329 5186 789 234 77 0 chr3 157965062 157965284 -69559294 + L1MD2 LINE L1 4958 5196 -950 2399 61 0 3 chr3 157965431 157965727 -69558851 - AluY SINE Alu -16 295 1 * 2463 51 14 3 chr3 157965727 157966022 -69558556 - AluY SINE Alu -13 298 1 2355 81 0 13 chr3 157966378 157966688 -69557890 + AluYb8 SINE Alu 2 307 -11 185 292 42 125 chr3 157967526 157967718 -69556860 - L2 LINE L2 -806 2508 2333 2231 93 14 7 chr3 157967970 157968259 -69556319 + AluSq SINE Alu 1 291 -22 594 203 0 57 chr3 157969432 157969555 -69555023 + FLAM_A SINE Alu 1 116 -17 324 272 177 20 chr3 157969684 157969831 -69554747 - MIR3 SINE MIR -5 203 34 1940 120 7 3 chr3 157969877 157970193 -69554385 - AluY SINE Alu 0 317 1 29 0 0 0 chr3 157970327 157970356 -69554222 + AT_rich Low_complexity Low_complexity 1 29 0 316 272 252 44 chr3 157970793 157970999 -69553579 + L3 LINE CR1 1222 1470 -107 1324 257 119 2 chr3 157971396 157971874 -69552704 - MER20B DNA MER1_type -2 781 248 371 228 65 24 chr3 157971902 157972029 -69552549 - MER20B DNA MER1_type -54 165 34 2254 112 13 0 chr3 157972286 157972590 -69551988 - AluSx SINE Alu -4 308 1 197 256 110 73 chr3 157972740 157972822 -69551756 + L2 LINE L2 2897 2981 -291 2231 107 7 0 chr3 157972833 157973141 -69551437 - AluSg SINE Alu 0 310 1 235 355 66 8 chr3 157973984 157974105 -69550473 - MIR SINE MIR -115 147 20 382 273 0 0 chr3 157974541 157974640 -69549938 - MER94 DNA DNA -21 113 15 1147 256 153 30 chr3 157974648 157975112 -69549466 - MLT1F LTR MaLR -2 540 20 862 256 219 4 chr3 157975232 157975502 -69549076 + L2 LINE L2 1131 1458 -1856 776 114 0 100 chr3 157975502 157975642 -69548936 - AluSq SINE Alu -53 260 135 2540 254 138 49 chr3 157975673 157976438 -69548140 + L2 LINE L2 1547 2436 -878 2048 96 65 7 chr3 157976438 157976729 -69547849 - AluSg SINE Alu -1 309 2 2540 254 138 49 chr3 157976729 157977037 -69547541 + L2 LINE L2 2436 2715 -599 820 148 0 22 chr3 157977037 157977172 -69547406 + FLAM_C SINE Alu 1 132 -11 380 238 59 20 chr3 157977188 157977289 -69547289 + L2 LINE L2 2705 2809 -505 1154 196 111 8 chr3 157977291 157977643 -69546935 - MER3 DNA MER1_type 0 2623 2236 361 141 131 30 chr3 157977656 157977755 -69546823 - MER3 DNA MER1_type -53 156 48 882 281 40 29 chr3 157977764 157978038 -69546540 + L2 LINE L2 2811 3087 -226 248 345 136 0 chr3 157978527 157978637 -69545941 + L2 LINE L2 2967 3091 -181 230 306 28 0 chr3 157979161 157979233 -69545345 + MIR3 SINE MIR 128 201 -7 522 221 11 0 chr3 157979362 157979457 -69545121 + FLAM_A SINE Alu 1 96 -46 2270 85 0 3 chr3 157979567 157979849 -69544729 + AluSg SINE Alu 1 281 -29 195 42 0 0 chr3 157981627 157981651 -69542927 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 415 261 101 101 chr3 157983011 157983268 -69541310 + MIR SINE MIR 6 262 0 2443 60 10 0 chr3 157983690 157983988 -69540590 - AluSp SINE Alu -12 301 1 524 256 0 8 chr3 157984372 157984493 -69540085 + FLAM_A SINE Alu 5 124 -9 1626 142 35 4 chr3 157985259 157985519 -69539059 + AluJb SINE Alu 1 268 -44 1925 123 11 18 chr3 157986039 157986316 -69538262 - AluSx SINE Alu -13 299 25 2364 93 0 0 chr3 157986596 157986897 -69537681 - AluY SINE Alu -10 301 1 1859 77 0 98 chr3 157987224 157987537 -69537041 - AluSg SINE Alu 0 316 32 1713 151 69 0 chr3 157988270 157988587 -69535991 + MER7A DNA MER2_type 2 338 -8 180 125 0 0 chr3 157988783 157988815 -69535763 + (T)n Simple_repeat Simple_repeat 1 32 0 383 349 48 7 chr3 157989401 157989547 -69535031 - L2 LINE L2 0 3272 3121 204 317 155 0 chr3 157990431 157990573 -69534005 + MIR SINE MIR 49 212 -50 283 231 99 11 chr3 157990783 157990874 -69533704 - L2 LINE L2 -208 3064 2966 1985 163 0 0 chr3 157992065 157992371 -69532207 - AluJb SINE Alu -6 306 1 665 226 53 8 chr3 157992564 157992807 -69531771 + L1MEc LINE L1 1795 2048 -4348 1267 195 13 80 chr3 157995234 157995337 -69529241 + AluJo SINE Alu 14 122 -190 2257 94 0 7 chr3 157995337 157995636 -69528942 - AluSg1 SINE Alu -11 298 2 1267 195 13 80 chr3 157995636 157995834 -69528744 + AluJo SINE Alu 122 295 -17 1647 172 7 4 chr3 157995848 157996121 -69528457 + AluSx SINE Alu 2 275 -37 2041 83 20 27 chr3 157996489 157996790 -69527788 - AluSc SINE Alu -10 299 1 290 146 0 0 chr3 157996790 157996845 -69527733 - L1MA4 LINE L1 -160 6140 6086 228 182 0 0 chr3 157996948 157996992 -69527586 + (TG)n Simple_repeat Simple_repeat 1 44 0 2355 98 0 10 chr3 157997366 157997673 -69526905 - AluSg SINE Alu -6 304 1 651 230 86 6 chr3 157997756 157997930 -69526648 - MER5A DNA MER1_type -1 188 1 354 241 161 0 chr3 157999101 157999188 -69525390 + MER5A DNA MER1_type 5 105 -84 2065 122 16 16 chr3 157999347 157999659 -69524919 - AluSx SINE Alu 0 312 1 653 56 11 0 chr3 158000514 158000604 -69523974 + (TA)n Simple_repeat Simple_repeat 1 91 0 893 204 101 54 chr3 158000604 158000983 -69523595 - L1MC4a LINE L1 -190 5931 5502 2032 141 0 10 chr3 158001748 158002053 -69522525 + AluJb SINE Alu 1 302 -10 640 98 0 226 chr3 158003014 158003178 -69521400 + FLAM_C SINE Alu 1 127 -6 2295 114 0 16 chr3 158003341 158003656 -69520922 - AluSx SINE Alu -2 310 1 629 241 111 4 chr3 158003906 158004159 -69520419 + L1MC4a LINE L1 5685 5964 -1844 254 217 14 58 chr3 158004506 158004575 -69520003 + MIR SINE MIR 184 249 -13 240 265 75 34 chr3 158004732 158004879 -69519699 + L1ME LINE L1 5629 5781 -340 2151 114 0 22 chr3 158005474 158005790 -69518788 - AluSc SINE Alu 0 309 1 2425 78 0 3 chr3 158007179 158007486 -69517092 - AluY SINE Alu -5 306 1 2367 81 3 3 chr3 158009448 158009745 -69514833 - AluSg SINE Alu -13 297 1 184 210 16 97 chr3 158009758 158009820 -69514758 + L2 LINE L2 3216 3272 0 257 294 94 50 chr3 158011437 158011597 -69512981 + MIR SINE MIR 47 213 -49 186 283 71 30 chr3 158011825 158011924 -69512654 + MIR SINE MIR 100 202 -60 1782 84 4 0 chr3 158012225 158012450 -69512128 + AluSg/x SINE Alu 77 302 -10 24 32 0 0 chr3 158015013 158015044 -69509534 + AT_rich Low_complexity Low_complexity 1 31 0 301 254 59 34 chr3 158015192 158015310 -69509268 - MARNA DNA Mariner -395 191 71 207 0 69 0 chr3 158015646 158015675 -69508903 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2325 82 0 3 chr3 158015675 158015959 -69508619 - AluY SINE Alu -26 285 1 245 189 0 0 chr3 158019256 158019309 -69505269 + L2 LINE L2 3257 3309 -4 641 169 8 8 chr3 158020374 158020498 -69504080 + L2 LINE L2 3190 3313 0 280 282 39 0 chr3 158021591 158021669 -69502909 + MIR SINE MIR 170 250 -12 25 31 0 0 chr3 158021707 158021739 -69502839 + AT_rich Low_complexity Low_complexity 1 32 0 28 48 0 0 chr3 158021896 158021938 -69502640 + AT_rich Low_complexity Low_complexity 1 42 0 1938 130 0 63 chr3 158022247 158022562 -69502016 + AluJb SINE Alu 1 295 -17 1057 243 80 3 chr3 158023490 158023803 -69500775 + MER58B DNA MER1_type 2 338 -3 2536 63 0 3 chr3 158023835 158024137 -69500441 - AluSx SINE Alu -11 301 1 277 273 127 7 chr3 158025258 158025408 -69499170 + L1ME2 LINE L1 5777 5944 -220 25 31 0 0 chr3 158025572 158025604 -69498974 + AT_rich Low_complexity Low_complexity 1 32 0 2449 81 0 10 chr3 158025614 158025924 -69498654 + AluSq SINE Alu 1 307 -6 1730 145 3 40 chr3 158026725 158027028 -69497550 + AluJb SINE Alu 1 292 -20 756 263 125 48 chr3 158027071 158027637 -69496941 + L1MC5 LINE L1 7317 7926 -35 2081 95 60 0 chr3 158028183 158028467 -69496111 + AluSq SINE Alu 1 301 -12 223 268 0 93 chr3 158028555 158028652 -69495926 + L2 LINE L2 3226 3313 0 207 204 0 0 chr3 158029423 158029467 -69495111 + T-rich Low_complexity Low_complexity 1 44 0 1505 138 0 0 chr3 158029668 158029893 -69494685 + AluSg/x SINE Alu 85 309 -3 2314 94 0 3 chr3 158029921 158030220 -69494358 + AluSg SINE Alu 7 304 -6 207 0 0 0 chr3 158030243 158030266 -69494312 + (TA)n Simple_repeat Simple_repeat 2 24 0 922 129 8 0 chr3 158030266 158030398 -69494180 - L1PA10 LINE L1 -24 6144 6012 2026 197 113 37 chr3 158030577 158031090 -69493488 + MER21B LTR ERV1 255 806 -57 242 321 15 8 chr3 158031366 158031500 -69493078 + (CA)n Simple_repeat Simple_repeat 2 136 0 238 306 17 28 chr3 158031417 158031597 -69492981 + (CATA)n Simple_repeat Simple_repeat 3 180 0 * 215 226 18 24 chr3 158033494 158033658 -69490920 + (CA)n Simple_repeat Simple_repeat 1 163 0 237 167 0 0 chr3 158034726 158034768 -69489810 + L2 LINE L2 3210 3251 -21 414 287 9 0 chr3 158034967 158035075 -69489503 + MLT1J1 LTR MaLR 52 160 -286 297 276 136 41 chr3 158035270 158035491 -69489087 + L1MC/D LINE L1 5626 5867 -1941 189 74 0 0 chr3 158035734 158035761 -69488817 + (TA)n Simple_repeat Simple_repeat 1 27 0 2116 153 9 0 chr3 158035762 158036101 -69488477 + MER2 DNA MER2_type 1 342 -2 23 0 0 0 chr3 158036372 158036395 -69488183 + AT_rich Low_complexity Low_complexity 1 23 0 201 74 0 0 chr3 158036496 158036523 -69488055 + (T)n Simple_repeat Simple_repeat 1 27 0 2393 62 3 3 chr3 158036660 158036949 -69487629 + AluY SINE Alu 1 289 -22 240 35 0 0 chr3 158036979 158037008 -69487570 + (GA)n Simple_repeat Simple_repeat 2 30 0 194 184 82 0 chr3 158037199 158037248 -69487330 - MIR SINE MIR -87 175 123 1997 187 17 47 chr3 158037248 158037664 -69486914 + MSTD LTR MaLR 6 396 0 1254 56 0 0 chr3 158038142 158038285 -69486293 - AluY SINE Alu -62 249 107 629 75 128 0 chr3 158038978 158039072 -69485506 + MER5A DNA MER1_type 1 106 -83 375 238 0 69 chr3 158039075 158039176 -69485402 - MER102b DNA MER1_type -53 288 195 519 246 217 10 chr3 158039315 158039522 -69485056 - MIR SINE MIR -11 251 2 4280 63 77 3 chr3 158039617 158040203 -69484375 + L1PA8 LINE L1 5542 6170 -2 510 83 0 0 chr3 158040203 158040275 -69484303 - L1P LINE L1 -994 5152 5081 2340 63 0 3 chr3 158040275 158040572 -69484006 + L1PA6 LINE L1 5856 6153 -1 180 0 0 0 chr3 158040584 158040604 -69483974 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 259 297 40 0 chr3 158040721 158040822 -69483756 - L2 LINE L2 -1 3271 3167 473 243 52 52 chr3 158040827 158041037 -69483541 - MIR SINE MIR 0 262 53 225 287 21 43 chr3 158041171 158041265 -69483313 + L2 LINE L2 3142 3233 -39 2362 95 0 23 chr3 158041821 158042126 -69482452 + AluSq SINE Alu 1 298 -15 207 207 17 17 chr3 158042148 158042178 -69482400 + (ATG)n Simple_repeat Simple_repeat 2 34 -25 509 267 125 9 chr3 158042178 158042410 -69482168 - MIR SINE MIR -1 261 3 207 207 17 17 chr3 158042410 158042437 -69482141 + (ATG)n Simple_repeat Simple_repeat 33 59 0 2317 109 0 0 chr3 158042775 158043077 -69481501 + AluSx SINE Alu 3 304 -8 195 279 13 38 chr3 158043280 158043359 -69481219 - L3 LINE CR1 -104 1473 1397 21 0 0 0 chr3 158044015 158044036 -69480542 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 158046657 158046678 -69477900 + AT_rich Low_complexity Low_complexity 1 21 0 3924 132 27 44 chr3 158047022 158047383 -69477195 + L1MB3 LINE L1 5491 5836 -347 2196 162 8 8 chr3 158047383 158047748 -69476830 - MLT1A1 LTR MaLR 0 365 1 3924 132 27 44 chr3 158047748 158048084 -69476494 + L1MB3 LINE L1 5836 6176 -7 407 221 70 44 chr3 158048236 158048419 -69476159 + MIR SINE MIR 15 204 -52 361 234 37 37 chr3 158049379 158049486 -69475092 + MER102b DNA MER1_type 102 208 -133 1438 185 104 45 chr3 158049751 158049796 -69474782 - Charlie4a DNA MER1_type -1484 477 436 2437 76 0 0 chr3 158049796 158050112 -69474466 - AluSc SINE Alu 0 309 1 1438 185 104 45 chr3 158050112 158050487 -69474091 - Charlie4a DNA MER1_type -1525 436 32 276 308 29 54 chr3 158051065 158051287 -69473291 + L1MC4a LINE L1 5688 5905 -1903 2213 113 0 10 chr3 158051287 158051587 -69472991 - AluSq SINE Alu -16 297 1 276 308 29 54 chr3 158051587 158051604 -69472974 + L1MC4a LINE L1 5905 5921 -1887 273 57 0 0 chr3 158052281 158052316 -69472262 + (TG)n Simple_repeat Simple_repeat 2 36 0 1565 183 25 0 chr3 158052318 158052617 -69471961 - AluJo SINE Alu 0 306 1 1791 164 31 0 chr3 158052993 158053280 -69471298 - AluJb SINE Alu -16 296 1 21 0 0 0 chr3 158053475 158053496 -69471082 + AT_rich Low_complexity Low_complexity 1 21 0 308 121 0 30 chr3 158053496 158053562 -69471016 - L1MA8 LINE L1 -1 6290 6227 342 254 105 18 chr3 158053743 158053857 -69470721 + L2 LINE L2 3190 3313 0 548 261 125 5 chr3 158054007 158054191 -69470387 + MLT1J LTR MaLR 106 311 -200 388 266 246 33 chr3 158055487 158055788 -69468790 - L2 LINE L2 -1 3312 2948 734 233 175 54 chr3 158055923 158056369 -69468209 - L2 LINE L2 -365 2949 2450 383 94 31 0 chr3 158056654 158056718 -69467860 + CT-rich Low_complexity Low_complexity 5 70 0 690 197 0 8 chr3 158056902 158057024 -69467554 - FLAM_A SINE Alu -11 122 2 467 256 48 128 chr3 158058415 158058538 -69466040 + L1M4 LINE L1 3662 3793 -2353 695 193 7 22 chr3 158058538 158058673 -69465905 + FLAM_A SINE Alu 1 133 0 467 256 48 128 chr3 158058673 158059095 -69465483 + L1M4 LINE L1 3793 4163 -1983 358 266 31 31 chr3 158059179 158059307 -69465271 - MIR SINE MIR -123 139 12 2295 115 0 0 chr3 158061017 158061322 -69463256 - AluSx SINE Alu -7 305 1 589 149 75 0 chr3 158063492 158063599 -69460979 + MLT1A2 LTR MaLR 1 115 -259 189 0 0 0 chr3 158063622 158063643 -69460935 + (TC)n Simple_repeat Simple_repeat 2 22 0 429 114 61 7 chr3 158063682 158063761 -69460817 + MLT1A2 LTR MaLR 305 374 0 366 273 9 9 chr3 158064039 158064149 -69460429 + L2 LINE L2 2394 2503 -811 792 300 77 66 chr3 158064151 158064394 -69460184 - LTR16B LTR ERVL -6 458 206 2368 92 0 0 chr3 158064394 158064689 -69459889 + AluSx SINE Alu 1 295 -17 792 300 77 66 chr3 158064689 158064898 -69459680 - LTR16B LTR ERVL -258 206 1 464 243 14 35 chr3 158065188 158065332 -69459246 - HERV16 LTR ERVL -301 4695 4555 1780 325 50 21 chr3 158065341 158065950 -69458628 - ERVL LTR ERVL -744 5020 4364 3132 114 12 107 chr3 158065950 158066519 -69458059 + MLT2B2 LTR ERVL 1 515 0 1780 325 50 21 chr3 158066519 158066746 -69457832 - ERVL LTR ERVL -1400 4364 4145 380 283 52 12 chr3 158066809 158067048 -69457530 - L1P5 LINE L1 -705 5446 5199 383 332 43 75 chr3 158067197 158067266 -69457312 - L1M4 LINE L1 -1030 5116 5046 2045 159 0 13 chr3 158067266 158067580 -69456998 - AluSx SINE Alu -2 310 1 383 332 43 75 chr3 158067580 158067859 -69456719 - L1M4 LINE L1 -1100 5046 4779 216 271 17 0 chr3 158068108 158068167 -69456411 + GA-rich Low_complexity Low_complexity 1 60 0 1174 233 42 0 chr3 158068833 158069095 -69455483 + L1MEc LINE L1 36 308 -6088 1552 141 16 66 chr3 158069095 158069567 -69455011 + L1P5 LINE L1 4958 5387 -764 2344 113 0 0 chr3 158069567 158069878 -69454700 + AluSx SINE Alu 1 311 -1 1552 141 16 66 chr3 158069878 158069985 -69454593 + L1P5 LINE L1 5387 5498 -653 2398 95 3 3 chr3 158069988 158070294 -69454284 + AluSq SINE Alu 1 306 -7 883 270 35 37 chr3 158070301 158070540 -69454038 + L1MEc LINE L1 1067 1307 -5089 2103 109 7 0 chr3 158070540 158070846 -69453732 + AluSp SINE Alu 1 308 0 883 270 35 37 chr3 158070846 158071009 -69453569 + L1MEc LINE L1 1307 1469 -4927 * 3879 207 22 11 chr3 158071008 158071952 -69452626 + L1MC1 LINE L1 4337 5291 -855 1727 127 0 0 chr3 158072052 158072320 -69452258 + AluSx SINE Alu 59 312 0 6233 155 17 1 chr3 158072320 158073315 -69451263 + L1MC1 LINE L1 5323 6333 0 2101 244 31 38 chr3 158073312 158073489 -69451089 + L1MEc LINE L1 1455 1632 -4764 * 2365 82 0 3 chr3 158073489 158073794 -69450784 + AluY SINE Alu 1 304 -7 2101 244 31 38 chr3 158073794 158074416 -69450162 + L1MEc LINE L1 1632 2249 -4147 656 241 64 117 chr3 158074611 158074733 -69449845 + L1MC5 LINE L1 6476 6603 -1205 396 0 0 0 chr3 158074733 158074777 -69449801 + (TG)n Simple_repeat Simple_repeat 2 45 0 656 241 64 117 chr3 158074777 158074899 -69449679 + L1MC5 LINE L1 6603 6730 -1078 2316 81 10 0 chr3 158074899 158075207 -69449371 + AluY SINE Alu 1 311 0 656 241 64 117 chr3 158075207 158075422 -69449156 + L1MC5 LINE L1 6730 6946 -862 313 185 0 160 chr3 158076174 158076293 -69448285 + MER102b DNA MER1_type 233 332 -9 2181 110 3 3 chr3 158076310 158076611 -69447967 - AluSg SINE Alu -9 301 1 791 148 169 0 chr3 158077268 158077410 -69447168 + MER5B DNA MER1_type 1 166 -12 496 219 18 35 chr3 158077426 158077540 -69447038 - MER5A DNA MER1_type 0 189 78 231 305 32 21 chr3 158077973 158078068 -69446510 - L2 LINE L2 -619 2695 2600 294 337 55 25 chr3 158078647 158078810 -69445768 - L2 LINE L2 0 3272 3105 2144 267 117 33 chr3 158079107 158079699 -69444879 - L2 LINE L2 -3 3310 2769 2387 102 0 6 chr3 158079699 158080014 -69444564 - AluSq SINE Alu 0 313 1 2144 267 117 33 chr3 158080014 158080627 -69443951 - L2 LINE L2 -544 2769 2002 210 338 0 14 chr3 158080627 158080698 -69443880 + L2 LINE L2 2985 3054 -218 2133 125 10 0 chr3 158080934 158081239 -69443339 + AluSg SINE Alu 1 308 -2 2208 124 0 6 chr3 158082558 158082873 -69441705 - AluSq SINE Alu 0 313 1 183 80 0 0 chr3 158084216 158084241 -69440337 + (A)n Simple_repeat Simple_repeat 1 25 0 2273 112 3 3 chr3 158088867 158089179 -69435399 - AluSx SINE Alu 0 312 1 585 223 25 144 chr3 158089550 158089798 -69434780 - MIR SINE MIR -17 245 36 329 351 15 0 chr3 158091572 158091703 -69432875 - MIR SINE MIR 0 262 130 221 212 169 37 chr3 158091837 158091967 -69432611 - MIR SINE MIR -26 236 88 261 236 34 45 chr3 158092248 158092337 -69432241 - MER5A DNA MER1_type -37 152 65 231 320 72 10 chr3 158093189 158093286 -69431292 + MLT1K LTR MaLR 24 126 -462 450 309 195 20 chr3 158095425 158095927 -69428651 - L2 LINE L2 -1117 2197 1608 666 188 106 80 chr3 158096637 158096796 -69427782 + L1MA4 LINE L1 2771 2924 -4642 1920 125 47 27 chr3 158096796 158097092 -69427486 + AluSx SINE Alu 1 302 -10 666 188 106 80 chr3 158097092 158097174 -69427404 + L1MA4 LINE L1 2924 3238 -4328 1980 139 0 0 chr3 158097176 158097449 -69427129 + AluSx SINE Alu 1 273 -39 531 86 29 0 chr3 158097449 158097519 -69427059 + Alu SINE Alu 222 293 -16 2079 110 45 0 chr3 158097519 158097810 -69426768 + AluSp SINE Alu 1 304 -9 14310 160 72 15 chr3 158097811 158100882 -69423696 + L1MA4 LINE L1 3628 6979 -740 2178 99 0 3 chr3 158100882 158101193 -69423385 + AluSx SINE Alu 1 310 0 14310 160 72 15 chr3 158101193 158101977 -69422601 + L1MA4 LINE L1 6979 7717 -2 1318 134 60 48 chr3 158103154 158103423 -69421155 + AluSx SINE Alu 41 312 0 2512 58 0 3 chr3 158103827 158104137 -69420441 - AluY SINE Alu -2 309 1 188 348 137 31 chr3 158104344 158104505 -69420073 + MIR3 SINE MIR 14 191 -17 23 0 0 0 chr3 158105094 158105117 -69419461 + AT_rich Low_complexity Low_complexity 1 23 0 200 382 73 9 chr3 158107458 158107568 -69417010 + L2 LINE L2 3154 3270 -2 269 139 276 4 chr3 158107761 158107834 -69416744 - MIR SINE MIR -58 150 80 236 353 28 56 chr3 158108699 158108948 -69415630 - L2 LINE L2 -821 2493 2252 653 212 16 93 chr3 158109978 158110171 -69414407 - MER5B DNA MER1_type 0 178 1 380 227 357 11 chr3 158110282 158110467 -69414111 + MIR SINE MIR 14 262 0 2433 94 0 0 chr3 158111836 158112145 -69412433 - AluSg SINE Alu -1 309 1 1663 165 16 33 chr3 158112322 158112625 -69411953 - AluJb SINE Alu -14 298 1 287 169 68 0 chr3 158113804 158113863 -69410715 - MER46C DNA MER2_type 0 338 276 255 233 68 0 chr3 158113975 158114048 -69410530 - MIR SINE MIR -72 190 113 2051 120 0 10 chr3 158115443 158115751 -69408827 + AluSx SINE Alu 1 305 -7 1232 172 5 18 chr3 158116064 158116285 -69408293 + AluJo SINE Alu 85 302 -10 1185 208 19 57 chr3 158116315 158116681 -69407897 + L1MC4 LINE L1 7688 8039 -3 459 333 34 34 chr3 158116784 158117048 -69407530 - MARNA DNA Mariner -202 384 121 213 94 0 0 chr3 158117292 158117324 -69407254 + (T)n Simple_repeat Simple_repeat 1 32 0 313 238 56 94 chr3 158117919 158118041 -69406537 - MIR SINE MIR -33 229 113 694 158 0 36 chr3 158118041 158118180 -69406398 - L1MA8 LINE L1 -2 6289 6156 313 238 56 94 chr3 158118180 158118217 -69406361 - MIR SINE MIR -149 113 76 343 273 71 63 chr3 158118390 158118601 -69405977 - MIR SINE MIR -26 236 16 207 306 201 46 chr3 158118688 158119122 -69405456 + L2 LINE L2 1968 2468 -846 187 280 40 0 chr3 158119120 158119170 -69405408 - MIR3 SINE MIR -154 54 3 * 1263 122 0 41 chr3 158119269 158119465 -69405113 - AluSg/x SINE Alu 0 312 125 2239 102 10 0 chr3 158120080 158120374 -69404204 + AluSg SINE Alu 1 297 -13 22 0 0 0 chr3 158120387 158120409 -69404169 + AT_rich Low_complexity Low_complexity 1 22 0 1946 141 0 7 chr3 158121307 158121604 -69402974 - AluSx SINE Alu -17 295 1 311 179 15 0 chr3 158121682 158121749 -69402829 + (TATG)n Simple_repeat Simple_repeat 1 68 0 277 286 26 0 chr3 158122684 158122761 -69401817 + L1ME3A LINE L1 6031 6109 -61 2346 78 0 7 chr3 158122761 158123057 -69401521 + AluY SINE Alu 1 294 -17 232 233 233 0 chr3 158123094 158123167 -69401411 - MIR SINE MIR -157 105 16 553 215 15 15 chr3 158123747 158123877 -69400701 - L1MA10 LINE L1 -14 6320 6191 1946 217 105 49 chr3 158123877 158125711 -69398867 + L1ME1 LINE L1 4066 6090 -76 2176 104 14 0 chr3 158125711 158126000 -69398578 + AluSx SINE Alu 1 293 -19 1946 217 105 49 chr3 158126000 158126055 -69398523 + L1ME1 LINE L1 6090 6141 -25 3582 232 71 56 chr3 158126072 158127394 -69397184 - L1M4 LINE L1 -1518 4628 3281 2220 102 3 0 chr3 158127394 158127689 -69396889 - AluSx SINE Alu -16 296 1 3582 232 71 56 chr3 158127689 158127816 -69396762 - L1M4 LINE L1 -2865 3281 3157 1984 138 0 14 chr3 158127817 158127970 -69396608 - AluSx SINE Alu -26 286 137 2311 104 0 0 chr3 158127970 158128277 -69396301 - AluSg SINE Alu -3 307 1 1984 138 0 14 chr3 158128277 158128413 -69396165 - AluSx SINE Alu -175 137 1 840 267 67 0 chr3 158128425 158128635 -69395943 - MER58A DNA MER1_type 0 224 1 183 42 0 0 chr3 158128697 158128721 -69395857 + (TG)n Simple_repeat Simple_repeat 2 25 0 2213 116 3 0 chr3 158128774 158129075 -69395503 - AluSc SINE Alu -7 302 1 2164 93 38 3 chr3 158129851 158130141 -69394437 + AluSg SINE Alu 1 300 -10 273 331 162 45 chr3 158130833 158131099 -69393479 + L2 LINE L2 2968 3264 -8 352 309 109 60 chr3 158132170 158132519 -69392059 + L2 LINE L2 518 883 -2431 250 308 50 25 chr3 158132677 158132797 -69391781 + L2 LINE L2 1295 1417 -1897 843 334 93 12 chr3 158132798 158133292 -69391286 + L2 LINE L2 2736 3267 -5 1021 303 215 31 chr3 158133362 158133435 -69391143 + L2 LINE L2 1705 1763 -1550 2136 116 10 3 chr3 158133435 158133728 -69390850 - AluSx SINE Alu -17 295 1 1021 303 215 31 chr3 158133728 158134047 -69390531 + L2 LINE L2 1763 2022 -1291 643 267 11 22 chr3 158134047 158134227 -69390351 - MER5B DNA MER1_type 0 178 1 1021 303 215 31 chr3 158134227 158134958 -69389620 + L2 LINE L2 2022 3109 -204 1812 58 5 5 chr3 158135443 158135667 -69388911 + AluY SINE Alu 86 309 -2 592 274 179 0 chr3 158137395 158137607 -69386971 + MIR SINE MIR 12 261 -1 21 36 0 0 chr3 158138089 158138117 -69386461 + GC_rich Low_complexity Low_complexity 1 28 0 243 250 0 53 chr3 158138129 158138205 -69386373 + CT-rich Low_complexity Low_complexity 5 76 0 234 268 42 0 chr3 158138782 158138853 -69385725 - MIR3 SINE MIR -53 155 82 413 61 0 0 chr3 158139427 158139476 -69385102 + AluY SINE Alu 201 249 -62 255 233 68 0 chr3 158190651 158190724 -69333854 - MIR SINE MIR -72 190 113 1974 122 13 10 chr3 158192064 158192368 -69332210 + AluSx SINE Alu 1 305 -7 1232 172 5 18 chr3 158192681 158192902 -69331676 + AluJo SINE Alu 85 302 -10 1185 208 19 57 chr3 158192932 158193298 -69331280 + L1MC4 LINE L1 7688 8039 -3 459 333 34 34 chr3 158193401 158193665 -69330913 - MARNA DNA Mariner -202 384 121 213 94 0 0 chr3 158193909 158193941 -69330637 + (T)n Simple_repeat Simple_repeat 1 32 0 313 238 56 94 chr3 158194536 158194658 -69329920 - MIR SINE MIR -33 229 113 694 158 0 36 chr3 158194658 158194797 -69329781 - L1MA8 LINE L1 -2 6289 6156 313 238 56 94 chr3 158194797 158194834 -69329744 - MIR SINE MIR -149 113 76 343 273 71 63 chr3 158195007 158195218 -69329360 - MIR SINE MIR -26 236 16 217 303 198 46 chr3 158195305 158195740 -69328838 + L2 LINE L2 1968 2468 -846 187 280 40 0 chr3 158195738 158195788 -69328790 - MIR3 SINE MIR -154 54 3 * 1288 117 0 41 chr3 158195887 158196083 -69328495 - AluSg/x SINE Alu 0 312 125 2239 102 10 0 chr3 158196699 158196993 -69327585 + AluSg SINE Alu 1 297 -13 22 0 0 0 chr3 158197006 158197028 -69327550 + AT_rich Low_complexity Low_complexity 1 22 0 2068 125 0 7 chr3 158197926 158198223 -69326355 - AluSx SINE Alu -17 295 1 311 179 15 0 chr3 158198301 158198368 -69326210 + (TATG)n Simple_repeat Simple_repeat 1 68 0 277 286 26 0 chr3 158199303 158199380 -69325198 + L1ME3A LINE L1 6031 6109 -61 2346 78 0 7 chr3 158199380 158199676 -69324902 + AluY SINE Alu 1 294 -17 232 233 233 0 chr3 158199713 158199786 -69324792 - MIR SINE MIR -157 105 16 553 215 15 15 chr3 158200366 158200496 -69324082 - L1MA10 LINE L1 -14 6320 6191 1946 217 105 50 chr3 158200496 158202331 -69322247 + L1ME1 LINE L1 4066 6090 -76 2176 104 14 0 chr3 158202331 158202620 -69321958 + AluSx SINE Alu 1 293 -19 1946 217 105 50 chr3 158202620 158202675 -69321903 + L1ME1 LINE L1 6090 6141 -25 3580 232 72 56 chr3 158202692 158204014 -69320564 - L1M4 LINE L1 -1518 4628 3280 2193 105 3 0 chr3 158204014 158204309 -69320269 - AluSx SINE Alu -16 296 1 3580 232 72 56 chr3 158204309 158204421 -69320157 - L1M4 LINE L1 -2866 3280 3171 1964 144 0 14 chr3 158204437 158204591 -69319987 - AluSq SINE Alu -26 287 137 2311 104 0 0 chr3 158204591 158204898 -69319680 - AluSg SINE Alu -3 307 1 1964 144 0 14 chr3 158204898 158205034 -69319544 - AluSq SINE Alu -176 137 1 840 267 67 0 chr3 158205046 158205256 -69319322 - MER58A DNA MER1_type 0 224 1 183 42 0 0 chr3 158205318 158205342 -69319236 + (TG)n Simple_repeat Simple_repeat 2 25 0 2213 116 3 0 chr3 158205395 158205696 -69318882 - AluSc SINE Alu -7 302 1 2101 106 0 17 chr3 158206314 158206607 -69317971 - AluSc SINE Alu -21 288 1 332 218 78 131 chr3 158207127 158207255 -69317323 + MIR SINE MIR 13 127 -135 727 180 23 16 chr3 158207255 158207383 -69317195 - FLAM_A SINE Alu -4 129 1 332 218 78 131 chr3 158207383 158207460 -69317118 + MIR SINE MIR 127 207 -55 2387 70 0 22 chr3 158207490 158207803 -69316775 + AluY SINE Alu 1 306 -5 447 186 29 20 chr3 158207903 158208005 -69316573 - L1MD2 LINE L1 -488 5871 5769 * 2321 239 98 11 chr3 158207997 158208691 -69315887 - L1MD2 LINE L1 -1146 5000 4247 2204 220 43 24 chr3 158209023 158209532 -69315046 + LTR40a LTR ERVL 1 519 0 1806 127 22 11 chr3 158210265 158210533 -69314045 - AluJo SINE Alu -11 301 31 1603 238 107 48 chr3 158210533 158211138 -69313440 - LTR9B LTR ERV1 0 644 4 1944 130 27 13 chr3 158211317 158211616 -69312962 - AluSx SINE Alu -9 303 1 2515 163 38 19 chr3 158211905 158212328 -69312250 - MSTB1 LTR MaLR -1 431 1 266 299 28 42 chr3 158213545 158213689 -69310889 + LTR16C LTR ERVL 350 491 0 304 318 65 30 chr3 158213802 158214003 -69310575 - L1ME3A LINE L1 -226 5944 5737 2263 67 3 17 chr3 158214003 158214300 -69310278 - AluY SINE Alu -7 304 12 571 254 53 35 chr3 158215327 158215496 -69309082 - MIR3 SINE MIR -6 202 31 203 59 0 29 chr3 158215503 158215537 -69309041 + (CACCC)n Simple_repeat Simple_repeat 4 36 0 379 187 176 11 chr3 158217364 158217455 -69307123 - MER69 DNA AcHobo -2 2524 2419 2019 240 58 17 chr3 158217460 158218171 -69306407 + L1MCa LINE L1 2367 3108 -3318 485 204 10 0 chr3 158218172 158218270 -69306308 + L1M4 LINE L1 4472 4570 -1576 528 204 19 0 chr3 158218775 158218883 -69305695 - MER94 DNA DNA 0 134 25 2041 106 46 14 chr3 158218886 158219169 -69305409 + AluSx SINE Alu 5 296 -16 232 102 0 41 chr3 158219285 158219355 -69305223 - AluSc SINE Alu 0 320 253 2473 94 0 0 chr3 158219937 158220246 -69304332 - AluSg SINE Alu -1 309 1 1713 168 16 26 chr3 158220423 158220726 -69303852 - AluJb SINE Alu -12 300 1 2075 82 7 11 chr3 158222068 158222349 -69302229 + AluSg SINE Alu 1 280 -30 207 88 0 0 chr3 158223074 158223108 -69301470 + (A)n Simple_repeat Simple_repeat 1 34 0 1988 127 0 31 chr3 158223417 158223739 -69300839 - AluSx SINE Alu 0 312 1 1530 160 46 4 chr3 158223760 158224023 -69300555 - L1MC1 LINE L1 -16 6317 6044 779 177 71 120 chr3 158224034 158224317 -69300261 + LTR41 LTR ERVL 499 767 -6 344 175 0 0 chr3 158224327 158224384 -69300194 - L1MC1 LINE L1 -604 5562 5506 337 253 67 67 chr3 158224387 158224672 -69299906 - L1MCc LINE L1 -4975 1448 1164 1916 166 0 10 chr3 158224956 158225257 -69299321 - AluJb SINE Alu -14 298 1 371 250 11 36 chr3 158225683 158225867 -69298711 - MER112 DNA MER1_type -1 259 1 1148 176 215 33 chr3 158226121 158226456 -69298122 - MSTD LTR MaLR 0 396 1 2158 116 3 0 chr3 158227017 158227328 -69297250 - AluSq SINE Alu 0 312 1 287 277 152 112 chr3 158227648 158227775 -69296803 + L2 LINE L2 2882 3002 -270 2261 102 0 10 chr3 158227775 158228070 -69296508 - AluSg SINE Alu -18 292 1 287 277 152 112 chr3 158228070 158228317 -69296261 + L2 LINE L2 3002 3271 -1 1857 146 42 29 chr3 158228481 158228789 -69295789 + AluJo SINE Alu 1 312 0 3850 134 20 57 chr3 158229495 158230212 -69294366 + L1MB7 LINE L1 5424 6112 -72 2309 102 0 0 chr3 158230212 158230506 -69294072 - AluSx SINE Alu -18 294 1 3850 134 20 57 chr3 158230506 158230555 -69294023 + L1MB7 LINE L1 6112 6161 -23 28 0 0 0 chr3 158231278 158231306 -69293272 + GC_rich Low_complexity Low_complexity 1 28 0 224 226 19 0 chr3 158231682 158231735 -69292843 + (TGGG)n Simple_repeat Simple_repeat 1 54 0 196 266 118 101 chr3 158231931 158232100 -69292478 - L2 LINE L2 -85 3187 3016 1544 125 42 0 chr3 158233363 158233579 -69290999 + AluJb SINE Alu 80 304 -8 229 130 65 0 chr3 158234212 158234258 -69290320 - MLT1L LTR MaLR -4 611 563 25 0 0 0 chr3 158235065 158235090 -69289488 + AT_rich Low_complexity Low_complexity 1 25 0 242 267 154 86 chr3 158235984 158236276 -69288302 - L3 LINE CR1 -53 1524 1213 249 258 0 0 chr3 158236276 158236338 -69288240 + (TCCA)n Simple_repeat Simple_repeat 3 64 0 372 320 84 30 chr3 158236366 158236569 -69288009 - MIR SINE MIR -48 214 1 1673 153 18 25 chr3 158237421 158237695 -69286883 - AluJo SINE Alu -38 274 3 2117 134 10 0 chr3 158238261 158238559 -69286019 + AluSx SINE Alu 1 301 -11 2179 131 0 7 chr3 158240668 158240974 -69283604 + AluSx SINE Alu 3 306 -6 526 250 9 9 chr3 158241194 158241310 -69283268 - L2 LINE L2 -16 3256 3141 192 204 20 20 chr3 158241584 158241633 -69282945 - MIR SINE MIR -145 117 69 199 372 83 13 chr3 158243566 158243722 -69280856 + MIR SINE MIR 84 250 -12 262 172 247 11 chr3 158244904 158244997 -69279581 + MIR SINE MIR 38 152 -110 238 317 12 37 chr3 158245351 158245433 -69279145 - L2 LINE L2 0 3313 3234 390 317 56 85 chr3 158245460 158245644 -69278934 + L2 LINE L2 2809 2997 -275 2091 109 0 78 chr3 158245644 158245975 -69278603 - AluSg SINE Alu -5 305 1 390 317 56 85 chr3 158245975 158246238 -69278340 + L2 LINE L2 2997 3243 -29 478 277 126 13 chr3 158246952 158247111 -69277467 - MIR SINE MIR -2 260 84 797 221 12 0 chr3 158247646 158247809 -69276769 + MIR SINE MIR 24 188 -74 185 161 0 129 chr3 158248162 158248224 -69276354 + MIR3 SINE MIR 1 54 -154 441 272 9 0 chr3 158249909 158250023 -69274555 - MIR SINE MIR -118 144 30 330 98 0 0 chr3 158250882 158250933 -69273645 + (TG)n Simple_repeat Simple_repeat 1 51 0 388 253 58 39 chr3 158250982 158251136 -69273442 - MIR SINE MIR -39 223 67 310 272 62 0 chr3 158251795 158251876 -69272702 - L2 LINE L2 -18 3254 3169 1879 132 35 10 chr3 158252650 158252939 -69271639 + AluSg SINE Alu 1 296 -14 317 217 36 36 chr3 158253671 158253754 -69270824 - L1ME LINE L1 -439 5751 5669 367 299 17 17 chr3 158253965 158254082 -69270496 - MIR3 SINE MIR -1 207 91 1010 158 99 15 chr3 158254629 158254831 -69269747 - MER20 DNA MER1_type 0 219 1 190 162 0 27 chr3 158254958 158254995 -69269583 - L3b LINE CR1 -5 1578 1543 257 221 73 0 chr3 158255013 158255081 -69269497 - MER117 DNA MER1_type -65 132 60 282 219 109 0 chr3 158255227 158255291 -69269287 + L2 LINE L2 3239 3309 -4 296 214 94 26 chr3 158255295 158255412 -69269166 + L1ME4a LINE L1 5997 6121 0 627 218 92 0 chr3 158256127 158256269 -69268309 + MER5A DNA MER1_type 4 158 -31 4477 211 53 27 chr3 158256271 158256490 -69268088 - L1ME LINE L1 -1410 4805 4593 321 47 0 0 chr3 158256490 158256533 -69268045 + (TTTA)n Simple_repeat Simple_repeat 3 45 0 4477 211 53 27 chr3 158256533 158256570 -69268008 - L1ME LINE L1 -1622 4593 4558 183 42 0 0 chr3 158256570 158256594 -69267984 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 2079 93 0 45 chr3 158256601 158256891 -69267687 - AluSc SINE Alu -32 277 1 4477 211 53 27 chr3 158256891 158257506 -69267072 - L1ME LINE L1 -1662 4553 3883 1688 187 3 20 chr3 158257506 158257811 -69266767 - AluJo SINE Alu -12 300 1 4477 211 53 27 chr3 158257811 158258135 -69266443 - L1ME LINE L1 -2332 3883 3569 752 138 0 0 chr3 158258136 158258245 -69266333 - AluJb SINE Alu -14 298 190 485 183 0 0 chr3 158258245 158258327 -69266251 - L1ME LINE L1 -6276 120 39 1646 137 123 14 chr3 158258360 158258637 -69265941 + AluSx SINE Alu 1 307 -5 275 228 0 13 chr3 158258637 158258716 -69265862 + L1MB7 LINE L1 6088 6165 -19 1121 269 103 16 chr3 158258771 158259150 -69265428 + L2 LINE L2 2902 3313 0 373 238 0 0 chr3 158259325 158259409 -69265169 + MER103 DNA DNA 20 103 -63 196 262 0 0 chr3 158259533 158259575 -69265003 + L2 LINE L2 3257 3298 -15 1714 84 18 13 chr3 158259949 158260175 -69264403 + AluSg SINE Alu 1 227 -83 330 287 43 9 chr3 158260473 158260588 -69263990 - MIR SINE MIR -28 234 116 1177 148 71 0 chr3 158261334 158261544 -69263034 - L1MB3 LINE L1 0 6183 5959 5665 120 48 28 chr3 158261547 158261982 -69262596 - L1MA4 LINE L1 -2 6298 5873 2324 96 23 0 chr3 158261982 158262283 -69262295 - AluSq SINE Alu -5 308 1 5665 120 48 28 chr3 158262283 158262872 -69261706 - L1MA4 LINE L1 -427 5873 5254 1751 142 42 53 chr3 158262877 158262940 -69261638 - L1MB3 LINE L1 -157 6026 5964 2341 110 0 0 chr3 158262940 158263241 -69261337 - AluSx SINE Alu -11 301 1 1751 142 42 53 chr3 158263241 158263386 -69261192 - L1MB3 LINE L1 -219 5964 5819 2419 80 0 16 chr3 158263386 158263699 -69260879 - AluSc SINE Alu -1 308 1 1751 142 42 53 chr3 158263699 158263869 -69260709 - L1MB3 LINE L1 -364 5819 5651 329 298 73 8 chr3 158263921 158264045 -69260533 - MIR SINE MIR -55 153 22 225 317 97 32 chr3 158265377 158265563 -69259015 - L3 LINE CR1 -656 921 724 354 294 108 0 chr3 158265756 158265858 -69258720 + L2 LINE L2 3154 3266 -6 242 153 34 51 chr3 158265872 158265931 -69258647 + L2 LINE L2 3212 3269 -3 891 239 0 0 chr3 158265957 158266120 -69258458 - FRAM SINE Alu -2 164 2 3036 231 134 83 chr3 158266318 158267783 -69256795 - L2 LINE L2 -4 3309 1921 1887 135 76 3 chr3 158267783 158268072 -69256506 - AluJb SINE Alu -2 310 1 3036 231 134 83 chr3 158268072 158268124 -69256454 - L2 LINE L2 -1392 1921 1873 2235 104 3 0 chr3 158268124 158268440 -69256138 - AluSx SINE Alu 0 317 1 3036 231 134 83 chr3 158268440 158268678 -69255900 - L2 LINE L2 -1440 1873 1454 2375 171 43 96 chr3 158268699 158269113 -69255465 - L1MB7 LINE L1 -16 6168 5797 2349 94 3 0 chr3 158269113 158269412 -69255166 - AluSq SINE Alu -13 300 1 2375 171 43 96 chr3 158269412 158269624 -69254954 - L1MB7 LINE L1 -387 5797 5575 466 282 192 12 chr3 158269628 158269951 -69254627 - L2 LINE L2 -1822 1492 1112 454 280 26 10 chr3 158270064 158270204 -69254374 + MIR SINE MIR 3 143 -65 189 141 228 43 chr3 158270946 158271038 -69253540 + MIR SINE MIR 103 211 -51 699 100 0 0 chr3 158271049 158271139 -69253439 + AluS SINE Alu 2 91 -222 205 200 0 0 chr3 158271264 158271304 -69253274 + A-rich Low_complexity Low_complexity 1 40 0 2306 91 7 0 chr3 158271406 158271702 -69252876 - AluSq SINE Alu -11 302 5 369 342 40 0 chr3 158272236 158272385 -69252193 + MIR SINE MIR 73 227 -35 224 191 0 45 chr3 158272601 158272690 -69251888 + GA-rich Low_complexity Low_complexity 1 85 0 182 119 48 0 chr3 158272966 158273008 -69251570 + (TCTG)n Simple_repeat Simple_repeat 2 45 0 868 291 155 38 chr3 158273378 158274003 -69250575 - L1MEc LINE L1 -2660 3555 3004 1532 159 113 12 chr3 158274003 158274330 -69250248 + MER46B DNA MER2_type 1 235 -1 868 291 155 38 chr3 158274330 158274424 -69250154 - L1MEc LINE L1 -3211 3004 2922 2481 86 0 0 chr3 158274424 158274726 -69249852 + AluSc SINE Alu 1 302 -7 868 291 155 38 chr3 158274726 158274780 -69249798 - L1MEc LINE L1 -3293 2922 2680 821 196 12 17 chr3 158274781 158274954 -69249624 - AluJo SINE Alu -19 293 122 669 317 122 25 chr3 158274990 158275527 -69249051 - L1MEc LINE L1 -3568 2647 2102 730 171 0 8 chr3 158275809 158275926 -69248652 - AluJo SINE Alu -190 122 7 2435 87 0 3 chr3 158276256 158276555 -69248023 - AluSq SINE Alu -13 300 3 235 250 75 0 chr3 158276807 158276887 -69247691 - MIR3 SINE MIR -14 194 109 1300 255 145 41 chr3 158277087 158277594 -69246984 + L2 LINE L2 2195 2648 -665 2379 97 13 0 chr3 158277594 158277903 -69246675 - AluSq SINE Alu 0 313 1 1300 255 145 41 chr3 158277903 158278417 -69246161 + L2 LINE L2 2648 3311 -2 445 199 307 0 chr3 158278778 158278944 -69245634 - MIR SINE MIR -32 230 14 223 282 68 10 chr3 158279455 158279558 -69245020 - MIR SINE MIR -123 139 31 273 57 0 0 chr3 158280103 158280138 -69244440 + (TC)n Simple_repeat Simple_repeat 1 35 0 235 308 75 0 chr3 158280438 158280545 -69244033 + L1ME LINE L1 5348 5462 -2346 436 216 119 15 chr3 158281705 158281839 -69242739 + MIR SINE MIR 45 192 -70 730 175 0 70 chr3 158284067 158284210 -69240368 + FLAM_C SINE Alu 3 135 -8 24 67 0 0 chr3 158285259 158285304 -69239274 + AT_rich Low_complexity Low_complexity 1 45 0 284 330 96 38 chr3 158288291 158288500 -69236078 + MIR SINE MIR 2 222 -40 471 218 11 0 chr3 158288845 158288932 -69235646 - L2 LINE L2 0 3313 3226 922 209 134 11 chr3 158288967 158289235 -69235343 - MLT1D LTR MaLR 0 505 205 4047 235 128 25 chr3 158289250 158289598 -69234980 + L2 LINE L2 1366 1677 -1637 2417 104 0 7 chr3 158289598 158289907 -69234671 - AluSx SINE Alu -5 307 1 4047 235 128 25 chr3 158289907 158290827 -69233751 + L2 LINE L2 1677 2764 -550 355 246 220 8 chr3 158291319 158291437 -69233141 + MER5A DNA MER1_type 33 175 -14 1024 180 22 0 chr3 158292101 158292284 -69232294 + MER5A DNA MER1_type 2 188 -1 3955 89 35 4 chr3 158292452 158292989 -69231589 - MER41A LTR ERV1 0 554 1 714 256 17 11 chr3 158293661 158293837 -69230741 - MER5B DNA MER1_type 0 178 2 743 197 0 0 chr3 158294443 158294570 -69230008 + FLAM_A SINE Alu 1 127 -6 528 218 36 0 chr3 158294802 158294912 -69229666 + MER81 DNA DNA 1 114 0 575 155 213 32 chr3 158294975 158295130 -69229448 - MER5A DNA MER1_type -2 187 5 499 290 184 14 chr3 158295210 158295417 -69229161 - MIR SINE MIR -6 256 15 473 271 84 30 chr3 158296067 158296217 -69228361 + MIR SINE MIR 41 206 -56 2094 151 33 0 chr3 158296217 158296554 -69228024 + MER7A DNA MER2_type 1 346 0 473 271 84 30 chr3 158296554 158296606 -69227972 + MIR SINE MIR 206 254 -8 346 294 89 0 chr3 158297031 158297177 -69227401 + L1ME LINE L1 5548 5706 -415 433 318 90 37 chr3 158297230 158297736 -69226842 - L1ME LINE L1 -527 5594 5055 1828 164 24 0 chr3 158297764 158298062 -69226516 - AluJo SINE Alu -7 305 1 299 273 27 27 chr3 158298070 158298180 -69226398 + MIR SINE MIR 125 234 -28 248 263 132 0 chr3 158298211 158298325 -69226253 - L1P LINE L1 -1134 5012 4884 1816 152 180 13 chr3 158298552 158298696 -69225882 - MER65C LTR ERV1 0 461 342 2056 138 0 3 chr3 158298696 158298979 -69225599 + AluJb SINE Alu 1 282 -30 1816 152 180 13 chr3 158298979 158299229 -69225349 - MER65C LTR ERV1 -119 342 1 576 246 56 0 chr3 158299979 158300121 -69224457 + MIR SINE MIR 71 220 -42 666 222 56 6 chr3 158300985 158301165 -69223413 + MER5A DNA MER1_type 1 189 0 318 106 0 0 chr3 158301565 158301612 -69222966 + (CA)n Simple_repeat Simple_repeat 2 48 0 2466 104 73 19 chr3 158302072 158302248 -69222330 - LTR56 LTR ERV1 0 445 280 4614 117 35 25 chr3 158302248 158302968 -69221610 + LTR8A LTR ERV1 1 727 0 2466 104 73 19 chr3 158302968 158303096 -69221482 - LTR56 LTR ERV1 -165 280 160 5563 127 32 24 chr3 158303096 158303656 -69220922 - MER4D LTR ERV1 0 903 331 2092 122 11 0 chr3 158303656 158303942 -69220636 + AluSq SINE Alu 3 291 -22 5563 127 32 24 chr3 158303942 158304276 -69220302 - MER4D LTR ERV1 -572 331 1 2466 104 73 19 chr3 158304276 158304392 -69220186 - LTR56 LTR ERV1 -285 160 1 1902 183 55 32 chr3 158304392 158304822 -69219756 + MLT1C LTR MaLR 28 467 0 604 319 61 47 chr3 158304822 158304854 -69219724 + L1M4 LINE L1 3345 3375 -2771 3044 156 136 25 chr3 158304854 158305508 -69219070 - LTR8A LTR ERV1 0 727 1 604 319 61 47 chr3 158305508 158305857 -69218721 + L1M4 LINE L1 3375 3734 -2412 2465 97 28 86 chr3 158305949 158306266 -69218312 + LTR23 LTR ERV1 1 285 -152 2297 71 0 0 chr3 158306266 158306594 -69217984 + AluY SINE Alu 1 328 0 2465 97 28 86 chr3 158306594 158306739 -69217839 + LTR23 LTR ERV1 285 437 0 2189 187 82 12 chr3 158307383 158307775 -69216803 + MLT2B1 LTR ERVL 1 435 -85 4074 100 11 0 chr3 158307775 158308323 -69216255 - MER41A LTR ERV1 0 554 1 2189 187 82 12 chr3 158308323 158308416 -69216162 + MLT2B1 LTR ERVL 435 520 0 2092 103 0 58 chr3 158308447 158308758 -69215820 + AluSx SINE Alu 1 293 -19 303 253 0 11 chr3 158309100 158309191 -69215387 + L1M4 LINE L1 3885 3974 -2172 1825 139 17 17 chr3 158309193 158309550 -69215028 + AluJb SINE Alu 1 312 0 2128 120 0 10 chr3 158309624 158309933 -69214645 - AluSc SINE Alu -3 306 1 312 269 74 60 chr3 158309948 158310097 -69214481 - L1ME4a LINE L1 -51 6070 5920 2294 97 0 3 chr3 158310143 158310442 -69214136 + AluSx SINE Alu 1 298 -14 1122 148 0 0 chr3 158310442 158310611 -69213967 + AluSc SINE Alu 132 300 -9 341 237 0 13 chr3 158310615 158310691 -69213887 - HAL1b LINE L1 -104 1244 1170 3025 242 69 18 chr3 158310713 158311753 -69212825 - L1M4 LINE L1 -2415 3731 2639 1138 165 57 13 chr3 158311753 158311983 -69212595 + L1MB3 LINE L1 5941 6180 -3 2352 117 0 0 chr3 158312041 158312350 -69212228 + AluSc SINE Alu 1 309 0 362 335 134 11 chr3 158312418 158312597 -69211981 - MIR SINE MIR -54 208 8 2095 128 7 7 chr3 158312761 158313065 -69211513 + AluSx SINE Alu 3 306 -6 21 0 0 0 chr3 158313138 158313159 -69211419 + AT_rich Low_complexity Low_complexity 1 21 0 2278 107 0 10 chr3 158313159 158313468 -69211110 + AluSq SINE Alu 1 306 -7 2374 77 0 3 chr3 158313468 158313767 -69210811 + AluY SINE Alu 1 298 -13 588 241 53 87 chr3 158313814 158314055 -69210523 + L2 LINE L2 3046 3279 -34 1682 209 97 30 chr3 158314055 158314490 -69210088 - MLT1C LTR MaLR 0 467 4 588 241 53 87 chr3 158314490 158314513 -69210065 + L2 LINE L2 3279 3301 -12 215 327 50 30 chr3 158314647 158314748 -69209830 + L3 LINE CR1 998 1100 -477 2050 156 13 0 chr3 158314815 158315123 -69209455 + AluSx SINE Alu 1 312 0 428 301 48 0 chr3 158315187 158315290 -69209288 - L2 LINE L2 -334 2979 2872 459 248 36 0 chr3 158315807 158315944 -69208634 + MER103 DNA DNA 1 142 -24 347 308 8 0 chr3 158316115 158316235 -69208343 + GA-rich Low_complexity Low_complexity 2 122 0 22 0 0 0 chr3 158317147 158317169 -69207409 + GC_rich Low_complexity Low_complexity 1 22 0 1653 163 60 4 chr3 158318705 158319037 -69205541 - MLT1B LTR MaLR -1 370 39 220 287 241 9 chr3 158320934 158321042 -69203536 + MER91A DNA MER1_type 61 193 -3 301 321 73 0 chr3 158321188 158321297 -69203281 + MIR3 SINE MIR 86 202 -6 189 258 90 11 chr3 158322539 158322628 -69201950 + MIR3 SINE MIR 88 183 -25 321 280 54 119 chr3 158323389 158323650 -69200928 - L2 LINE L2 -4 3268 3025 373 223 108 0 chr3 158324677 158324807 -69199771 - L1ME4a LINE L1 0 6121 5978 303 301 196 20 chr3 158324844 158324997 -69199581 - L1ME4a LINE L1 -217 5904 5725 428 355 92 28 chr3 158325079 158325330 -69199248 + L2 LINE L2 2999 3265 -7 272 189 68 14 chr3 158325330 158325404 -69199174 - L1ME4a LINE L1 -410 5711 5634 222 219 0 0 chr3 158326247 158326311 -69198267 + (TG)n Simple_repeat Simple_repeat 1 64 0 525 281 13 13 chr3 158327554 158327707 -69196871 + MER5A DNA MER1_type 37 189 0 323 279 73 14 chr3 158328294 158328437 -69196141 - MIR SINE MIR -20 242 90 289 183 204 21 chr3 158328575 158328668 -69195910 + MIR SINE MIR 82 191 -71 510 236 153 13 chr3 158328836 158328993 -69195585 + MIR SINE MIR 13 191 -71 237 229 167 0 chr3 158329058 158329154 -69195424 + L1M4 LINE L1 2309 2420 -3726 780 167 0 15 chr3 158329164 158329296 -69195282 + AluJo/FLAM SINE Alu 3 132 -180 1377 202 44 0 chr3 158329298 158329419 -69195159 + AluJb SINE Alu 1 115 -197 198 0 0 0 chr3 158329419 158329441 -69195137 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 1377 202 44 0 chr3 158329441 158329591 -69194987 + AluJb SINE Alu 115 284 -28 453 301 63 45 chr3 158329792 158330059 -69194519 + L1M4 LINE L1 2699 2976 -3170 376 284 104 77 chr3 158330380 158330540 -69194038 + L1M4 LINE L1 4563 4717 -1429 2195 97 7 3 chr3 158330540 158330848 -69193730 + AluSq SINE Alu 1 309 -4 376 284 104 77 chr3 158330848 158331246 -69193332 + L1M4 LINE L1 4717 5136 -1010 2073 131 0 3 chr3 158331627 158331940 -69192638 - AluSx SINE Alu 0 312 1 312 277 87 38 chr3 158332004 158332156 -69192422 - MER5A DNA MER1_type -7 182 3 356 314 215 32 chr3 158332399 158332771 -69191807 - L2 LINE L2 0 3272 2833 233 232 71 10 chr3 158333930 158334029 -69190549 + L1ME4a LINE L1 5981 6085 -36 195 259 0 0 chr3 158334355 158334409 -69190169 + L2 LINE L2 3164 3217 -96 336 313 82 15 chr3 158334947 158335081 -69189497 + MIR SINE MIR 21 163 -99 265 242 65 0 chr3 158335359 158335421 -69189157 + L3b LINE CR1 1324 1389 -194 657 213 8 0 chr3 158335493 158335615 -69188963 + FLAM_A SINE Alu 1 123 -10 479 254 16 8 chr3 158336417 158336539 -69188039 - FLAM_A SINE Alu -10 123 1 1010 178 56 0 chr3 158336613 158336810 -69187768 + AluJb SINE Alu 84 291 -21 1900 113 3 63 chr3 158336810 158337129 -69187449 + AluSq SINE Alu 1 300 -13 21 0 0 0 chr3 158338352 158338373 -69186205 + AT_rich Low_complexity Low_complexity 1 21 0 2088 101 10 10 chr3 158338373 158338681 -69185897 + AluY SINE Alu 1 308 -3 19581 62 2 0 chr3 158338683 158341105 -69183473 + L1P LINE L1 2 2427 -3719 990 134 9 56 chr3 158341233 158341406 -69183172 + L1MA4 LINE L1 6092 6255 -45 4769 159 38 60 chr3 158341406 158342497 -69182081 + MER11C LTR ERVK 1 1067 -4 990 134 9 56 chr3 158342497 158342539 -69182039 + L1MA4 LINE L1 6255 6297 -3 2128 121 0 6 chr3 158342695 158343009 -69181569 + AluSx SINE Alu 1 312 0 303 19 38 38 chr3 158343234 158343287 -69181291 + (AAATG)n Simple_repeat Simple_repeat 3 55 0 4451 153 15 12 chr3 158343484 158344215 -69180363 - MER44D DNA MER2_type 0 605 1 1470 179 14 7 chr3 158344238 158344518 -69180060 + L1 LINE L1 3624 3905 -2241 4431 174 66 21 chr3 158344910 158345808 -69178770 + L1PBa LINE L1 1 938 -5925 1194 169 60 25 chr3 158345998 158346038 -69178540 - L1MC/D LINE L1 -517 7057 7020 288 111 0 0 chr3 158346038 158346083 -69178495 + (CATA)n Simple_repeat Simple_repeat 1 45 0 1194 169 60 25 chr3 158346083 158346426 -69178152 - L1MC/D LINE L1 -554 7020 3344 624 221 16 8 chr3 158346457 158346579 -69177999 - AluSq/x SINE Alu -187 125 3 441 219 81 31 chr3 158346587 158346747 -69177831 - L1M1 LINE L1 -4227 3338 3171 768 148 0 0 chr3 158346759 158346881 -69177697 - AluJ SINE Alu -3 309 188 296 298 36 0 chr3 158346881 158346965 -69177613 + MER52A LTR ERV1 3 89 -1666 * 5463 182 57 133 chr3 158346938 158348648 -69175930 + MER52A LTR ERV1 197 1747 -8 1124 195 0 5 chr3 158348650 158348850 -69175728 - AluJ SINE Alu -113 199 1 1129 239 28 54 chr3 158348850 158349351 -69175227 - L1M1 LINE L1 -4391 3174 2687 2204 97 50 0 chr3 158349359 158349680 -69174898 - L1PA14 LINE L1 -17 6144 5808 4869 184 40 3 chr3 158349829 158350735 -69173843 + L1M3f LINE L1 14 952 -4376 555 242 45 15 chr3 158350756 158350954 -69173624 - L1 LINE L1 -2610 3536 3333 1525 139 50 50 chr3 158351026 158351328 -69173250 - AluSx SINE Alu -10 302 1 1952 182 65 19 chr3 158351416 158351889 -69172689 + L1M3f LINE L1 971 1465 -4863 965 191 43 5 chr3 158351888 158352097 -69172481 + L1P LINE L1 5048 5264 -882 * 1268 222 55 42 chr3 158352411 158352790 -69171788 + MER67C LTR ERV1 6 389 -321 1069 162 14 28 chr3 158352787 158353003 -69171575 + MER67C LTR ERV1 498 710 0 * 31 82 0 0 chr3 158353077 158353150 -69171428 + AT_rich Low_complexity Low_complexity 1 73 0 308 252 8 126 chr3 158353241 158353360 -69171218 + MIR SINE MIR 9 113 -149 2989 202 34 30 chr3 158353551 158354196 -69170382 + MER82 DNA MER2_type 1 648 -5 224 280 61 15 chr3 158354330 158354462 -69170116 + L2 LINE L2 2364 2501 -813 349 208 52 0 chr3 158354900 158354977 -69169601 + MIR SINE MIR 181 261 -1 2152 77 13 52 chr3 158355520 158355830 -69168748 + AluSg SINE Alu 5 302 -8 965 117 28 21 chr3 158355830 158355975 -69168603 + MER44D DNA MER2_type 588 605 0 248 203 136 0 chr3 158355984 158356043 -69168535 + LTR33 LTR ERVL 442 508 -13 597 211 1 1 chr3 158356250 158356378 -69168200 - L1MB7 LINE L1 -205 5959 5832 1171 177 45 0 chr3 158356541 158356761 -69167817 + MER46A DNA MER2_type 5 234 -2 1579 145 91 0 chr3 158356796 158357093 -69167485 - MER33 DNA MER1_type 0 324 1 668 164 79 6 chr3 158357778 158357955 -69166623 - L1MB3 LINE L1 -2 6181 5992 1845 129 7 4 chr3 158358077 158358357 -69166221 + AluSq SINE Alu 14 294 -19 6296 81 23 47 chr3 158359762 158360720 -69163858 + SVA Other Other 452 1386 0 1173 55 6 6 chr3 158360721 158360884 -69163694 + L1P LINE L1 3072 3234 -2912 321 242 87 74 chr3 158361032 158361181 -69163397 + L1ME4a LINE L1 5920 6070 -51 2180 103 0 3 chr3 158361196 158361498 -69163080 + AluY SINE Alu 1 301 -10 731 162 0 8 chr3 158361828 158361945 -69162633 + FLAM_C SINE Alu 7 122 -21 313 261 169 8 chr3 158362405 158362535 -69162043 + L1 LINE L1 4900 5050 -1096 263 297 0 0 chr3 158363090 158363154 -69161424 + (TA)n Simple_repeat Simple_repeat 1 64 0 2455 61 0 0 chr3 158363167 158363463 -69161115 - AluY SINE Alu -15 296 1 4707 123 21 16 chr3 158364004 158364534 -69160044 + L1PBa LINE L1 1383 1920 -4943 2199 106 3 0 chr3 158364534 158364837 -69159741 - AluSp SINE Alu -9 304 1 4707 123 21 16 chr3 158364837 158365105 -69159473 + L1PBa LINE L1 1920 2185 -4678 994 92 0 0 chr3 158366544 158366674 -69157904 - AluY SINE Alu -180 131 2 6179 203 58 42 chr3 158366683 158367311 -69157267 - L1 LINE L1 -1825 5740 5124 1248 133 0 5 chr3 158367311 158367499 -69157079 - AluSx SINE Alu -125 187 1 6179 203 58 42 chr3 158367499 158368089 -69156489 - L1 LINE L1 -2441 5124 4545 3357 124 14 6 chr3 158368089 158368598 -69155980 - MER75 DNA T2_type -1 513 1 6179 203 58 42 chr3 158368598 158369768 -69154810 - L1 LINE L1 -3020 4545 3264 724 157 0 0 chr3 158369804 158369912 -69154666 - L1 LINE L1 -5848 1717 1610 9856 168 26 15 chr3 158369926 158371603 -69152975 - L1 LINE L1 -5851 1714 19 1471 120 5 0 chr3 158373425 158373642 -69150936 + AluSg/x SINE Alu 95 312 0 848 182 42 30 chr3 158374222 158374350 -69150228 + AluJb SINE Alu 2 134 -178 207 0 0 0 chr3 158374350 158374373 -69150205 + (CA)n Simple_repeat Simple_repeat 2 24 0 848 182 42 30 chr3 158374373 158374409 -69150169 + AluJb SINE Alu 134 168 -144 813 180 0 0 chr3 158374507 158374635 -69149943 - FLAM_A SINE Alu -5 128 1 602 196 29 22 chr3 158376367 158376505 -69148073 - MLT2B1 LTR ERVL -52 468 330 3978 164 5 3 chr3 158376642 158377376 -69147202 + L1MA2 LINE L1 4502 5237 -909 5730 48 148 150 chr3 158377379 158378549 -69146029 + MER11A LTR ERVK 1 1266 0 7135 111 161 110 chr3 158378569 158380184 -69144394 - pTR5 LTR ERV1 0 2438 742 6514 88 59 14 chr3 158380189 158381195 -69143383 + L1MA2 LINE L1 5254 6304 0 25 0 0 0 chr3 158381284 158381309 -69143269 + AT_rich Low_complexity Low_complexity 1 25 0 27 0 0 0 chr3 158381477 158381504 -69143074 + AT_rich Low_complexity Low_complexity 1 27 0 634 150 39 39 chr3 158381547 158381700 -69142878 - L1MA10 LINE L1 -3 6331 6179 743 197 112 165 chr3 158381825 158382647 -69141931 - L1ME3A LINE L1 -220 6019 5247 1733 92 107 4 chr3 158382648 158382919 -69141659 - AluSc SINE Alu 0 309 11 420 258 159 54 chr3 158383147 158383442 -69141136 - L1ME3A LINE L1 -3998 2398 2073 260 229 22 141 chr3 158383460 158383687 -69140891 - LTR41 LTR ERVL -18 755 556 474 209 198 51 chr3 158383826 158384003 -69140575 - LTR41 LTR ERVL -570 203 1 22 56 0 0 chr3 158386526 158386562 -69138016 + AT_rich Low_complexity Low_complexity 1 36 0 2089 90 14 3 chr3 158387507 158387795 -69136783 - AluSp SINE Alu -22 291 1 216 250 133 0 chr3 158388241 158388301 -69136277 + L2 LINE L2 3201 3268 -4 390 292 68 37 chr3 158388896 158389057 -69135521 + L2 LINE L2 3105 3270 -2 258 255 181 0 chr3 158390177 158390271 -69134307 + MIR SINE MIR 149 259 -3 180 222 89 0 chr3 158390330 158390375 -69134203 - MIR3 SINE MIR -26 182 134 425 232 136 32 chr3 158391192 158391347 -69133231 + L1MEd LINE L1 2 172 -5947 1532 266 83 40 chr3 158391431 158392235 -69132343 + L1MEd LINE L1 339 1177 -4942 205 267 0 67 chr3 158392874 158392934 -69131644 + MIR SINE MIR 60 115 -93 313 297 234 23 chr3 158393657 158393836 -69130742 + MIR SINE MIR 12 191 -27 214 286 50 8 chr3 158396018 158396137 -69128441 + L3 LINE CR1 1346 1469 -108 424 268 38 32 chr3 158396154 158396335 -69128243 - MER20B DNA MER1_type -2 217 32 1892 157 151 21 chr3 158396365 158396742 -69127836 + MSTB LTR MaLR 1 426 0 226 242 144 113 chr3 158397341 158397597 -69126981 - L1MC/D LINE L1 -1958 5850 5587 254 254 51 65 chr3 158399142 158399280 -69125298 - MIR3 SINE MIR -9 199 64 1166 241 24 14 chr3 158399742 158400037 -69124541 + L1MC4a LINE L1 5588 5885 -1923 1961 116 4 0 chr3 158400044 158400320 -69124258 + AluSx SINE Alu 1 277 -35 2000 112 0 20 chr3 158400475 158400770 -69123808 + AluJb SINE Alu 1 289 -23 622 208 117 7 chr3 158401614 158401768 -69122810 + MIR SINE MIR 6 176 -86 194 283 0 0 chr3 158401810 158401863 -69122715 + L2 LINE L2 3220 3272 0 331 200 143 19 chr3 158402316 158402421 -69122157 - MIR SINE MIR -116 146 29 274 213 294 22 chr3 158403135 158403271 -69121307 + MIR SINE MIR 24 196 -66 216 179 0 0 chr3 158404301 158404340 -69120238 - MIR SINE MIR -144 118 80 225 305 34 0 chr3 158405262 158405321 -69119257 + L2 LINE L2 2995 3055 -217 259 253 201 9 chr3 158406123 158406231 -69118347 - MIR SINE MIR -60 148 56 1897 108 39 11 chr3 158406613 158406892 -69117686 - MER1B DNA MER1_type 0 339 53 249 164 5 0 chr3 158408473 158408522 -69116056 - Alu SINE Alu -261 38 1 2119 113 0 3 chr3 158408645 158408947 -69115631 + AluSx SINE Alu 1 301 -11 1432 246 113 48 chr3 158408974 158409576 -69115002 + L1MC4 LINE L1 7262 7902 -140 289 169 0 0 chr3 158409588 158409647 -69114931 + L1MC4 LINE L1 7984 8042 0 2179 105 3 16 chr3 158409672 158409985 -69114593 + AluSx SINE Alu 1 309 -3 423 0 0 0 chr3 158410639 158410686 -69113892 + (TG)n Simple_repeat Simple_repeat 2 48 0 1722 262 69 45 chr3 158410940 158411517 -69113061 - MLT1E LTR MaLR -1 592 2 1929 133 37 0 chr3 158411951 158412245 -69112333 - AluSx SINE Alu -7 305 1 193 314 0 0 chr3 158412507 158412558 -69112020 - MIR SINE MIR -13 249 199 218 293 17 0 chr3 158412558 158412616 -69111962 - MIR SINE MIR -1 261 203 336 24 0 0 chr3 158412853 158412894 -69111684 + (CA)n Simple_repeat Simple_repeat 1 41 0 403 299 23 81 chr3 158413774 158413828 -69110750 + MIR SINE MIR 20 76 -186 1325 189 73 51 chr3 158413828 158414182 -69110396 + MLT1A1 LTR MaLR 1 362 -3 403 299 23 81 chr3 158414182 158414301 -69110277 + MIR SINE MIR 76 183 -79 572 148 40 0 chr3 158414342 158414443 -69110135 - MSTD LTR MaLR -3 393 289 1427 187 4 8 chr3 158416196 158416463 -69108115 - AluJb SINE Alu -46 266 1 2195 88 0 0 chr3 158418465 158418775 -69105803 + AluSq SINE Alu 1 310 0 349 330 79 31 chr3 158418802 158419093 -69105485 + L2 LINE L2 3009 3313 0 2158 78 4 4 chr3 158419248 158419556 -69105022 + AluY SINE Alu 1 308 0 4404 138 40 10 chr3 158421175 158421950 -69102628 - L1MA4 LINE L1 -2 6298 5501 2284 99 0 6 chr3 158421959 158422272 -69102306 - AluSq SINE Alu -2 311 1 1595 279 168 3 chr3 158422272 158422885 -69101693 - L2 LINE L2 -599 2715 2002 213 273 0 18 chr3 158422901 158422956 -69101622 + L2 LINE L2 3001 3054 -218 2154 125 10 0 chr3 158423192 158423497 -69101081 + AluSg SINE Alu 1 308 -2 2222 129 0 0 chr3 158424821 158425131 -69099447 - AluSq SINE Alu -3 310 1 183 80 0 0 chr3 158426474 158426499 -69098079 + (A)n Simple_repeat Simple_repeat 1 25 0 2288 112 3 3 chr3 158431125 158431437 -69093141 - AluSx SINE Alu 0 312 1 513 219 27 152 chr3 158431808 158432032 -69092546 - MIR SINE MIR -17 245 50 299 351 15 0 chr3 158433730 158433861 -69090717 - MIR SINE MIR 0 262 130 188 228 218 30 chr3 158433995 158434096 -69090482 - MIR SINE MIR -26 236 117 243 227 45 0 chr3 158434429 158434495 -69090083 - MER5A DNA MER1_type -56 133 65 236 320 72 10 chr3 158435347 158435444 -69089134 + MLT1K LTR MaLR 24 126 -462 412 313 139 36 chr3 158437583 158438001 -69086577 - L2 LINE L2 -1117 2197 1737 656 186 105 85 chr3 158438795 158438955 -69085623 + L1M1 LINE L1 2771 2926 -4640 1935 125 47 27 chr3 158438955 158439251 -69085327 + AluSx SINE Alu 1 302 -10 656 186 105 85 chr3 158439251 158439333 -69085245 + L1M1 LINE L1 2926 3238 -4328 1845 141 0 11 chr3 158439335 158439611 -69084967 + AluSx SINE Alu 1 273 -39 509 84 28 0 chr3 158439611 158439682 -69084896 + Alu SINE Alu 224 296 -16 2092 110 45 0 chr3 158439682 158439973 -69084605 + AluSp SINE Alu 1 304 -9 14126 165 79 14 chr3 158439974 158443041 -69081537 + L1M1 LINE L1 3628 6905 -743 2165 97 38 3 chr3 158443045 158443335 -69081243 + AluSg SINE Alu 1 300 -10 222 307 156 55 chr3 158444075 158444293 -69080285 + L2 LINE L2 3025 3264 -8 291 321 121 41 chr3 158445364 158445654 -69078924 + L2 LINE L2 518 830 -2484 218 308 50 25 chr3 158445871 158445991 -69078587 + L2 LINE L2 1295 1417 -1897 712 335 93 12 chr3 158445992 158446486 -69078092 + L2 LINE L2 2736 3267 -5 792 307 215 30 chr3 158446556 158446629 -69077949 + L2 LINE L2 1705 1763 -1550 2154 116 10 3 chr3 158446629 158446922 -69077656 - AluSx SINE Alu -17 295 1 792 307 215 30 chr3 158446922 158447241 -69077337 + L2 LINE L2 1763 2021 -1292 587 267 11 22 chr3 158447241 158447421 -69077157 - MER5B DNA MER1_type 0 178 1 792 307 215 30 chr3 158447421 158448152 -69076426 + L2 LINE L2 2021 3109 -204 312 185 0 160 chr3 158449178 158449297 -69075281 + MER102a DNA MER1_type 222 321 -9 2155 110 7 3 chr3 158449314 158449614 -69074964 - AluSg SINE Alu -9 301 1 736 148 169 0 chr3 158450272 158450414 -69074164 + MER5B DNA MER1_type 1 166 -12 457 219 18 35 chr3 158450430 158450544 -69074034 - MER5A DNA MER1_type 0 189 78 207 305 32 21 chr3 158450977 158451072 -69073506 - L2 LINE L2 -619 2695 2600 246 337 55 25 chr3 158451651 158451814 -69072764 - L2 LINE L2 0 3272 3105 1385 296 55 13 chr3 158452111 158452659 -69071919 - L2 LINE L2 -3 3310 2732 814 170 7 7 chr3 158453599 158453740 -69070838 + MER2 DNA MER2_type 1 141 -204 893 123 216 0 chr3 158453753 158453915 -69070663 - MER30 DNA MER1_type -33 197 1 501 100 12 0 chr3 158453915 158453993 -69070585 + MER2 DNA MER2_type 132 210 -135 1890 181 0 0 chr3 158504124 158504422 -69020156 + AluJb SINE Alu 1 298 -14 2124 148 28 6 chr3 158504428 158504786 -69019792 - MER47A DNA MER2_type 0 366 1 1464 187 78 0 chr3 158505838 158506122 -69018456 - AluJo SINE Alu 0 312 7 378 71 71 0 chr3 158506837 158506921 -69017657 + (TA)n Simple_repeat Simple_repeat 1 90 0 306 95 0 0 chr3 158506930 158506972 -69017606 + Alu SINE Alu 245 286 -16 264 137 0 0 chr3 158506982 158507033 -69017545 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 211 27 27 27 chr3 158507101 158507138 -69017440 + (TA)n Simple_repeat Simple_repeat 2 38 0 332 71 0 0 chr3 158507139 158507181 -69017397 - Alu SINE Alu -16 286 245 242 130 29 29 chr3 158507196 158507265 -69017313 + (TA)n Simple_repeat Simple_repeat 1 69 0 287 114 24 54 chr3 158507286 158507453 -69017125 + (TA)n Simple_repeat Simple_repeat 1 162 0 997 134 0 47 chr3 158507457 158507628 -69016950 - AluJo SINE Alu -26 286 124 2095 136 0 10 chr3 158507851 158508152 -69016426 + AluSx SINE Alu 1 298 -14 241 170 0 21 chr3 158508836 158508883 -69015695 + MIR3 SINE MIR 152 197 -11 980 216 97 0 chr3 158509578 158509805 -69014773 + MIR SINE MIR 14 262 0 1726 181 31 0 chr3 158509965 158510258 -69014320 - AluJb SINE Alu -10 302 1 23 68 0 0 chr3 158510306 158510350 -69014228 + AT_rich Low_complexity Low_complexity 1 44 0 2233 98 7 3 chr3 158511251 158511548 -69013030 - AluSg SINE Alu -11 299 2 2207 112 10 3 chr3 158512226 158512522 -69012056 + AluSq SINE Alu 2 299 -14 1861 152 0 23 chr3 158512824 158513133 -69011445 - AluJb SINE Alu -6 306 5 475 305 168 7 chr3 158513292 158513577 -69011001 - HAL1 LINE L1 -789 1718 1388 723 177 63 34 chr3 158514176 158514351 -69010227 + MIR SINE MIR 79 258 -4 2030 144 3 0 chr3 158514352 158514637 -69009941 + AluJo SINE Alu 1 286 -26 2398 88 0 0 chr3 158514649 158514944 -69009634 + AluSx SINE Alu 1 295 -17 23 0 0 0 chr3 158514947 158514970 -69009608 + AT_rich Low_complexity Low_complexity 1 23 0 567 298 69 0 chr3 158515146 158515334 -69009244 - MIR SINE MIR -13 249 49 1210 256 88 41 chr3 158515931 158516512 -69008066 - L1MC4a LINE L1 -1917 5891 5284 2338 108 0 3 chr3 158516642 158516948 -69007630 - AluSg SINE Alu -5 305 1 2328 76 3 0 chr3 158517927 158518250 -69006328 - AluY SINE Alu 0 311 1 318 205 34 14 chr3 158518981 158519096 -69005482 - MER5A DNA MER1_type 0 189 7 590 219 8 8 chr3 158519804 158519927 -69004651 + FLAM_A SINE Alu 1 123 -10 1880 161 3 10 chr3 158520325 158520624 -69003954 + AluJb SINE Alu 3 299 -13 1219 182 40 49 chr3 158520634 158520881 -69003697 + AluJo SINE Alu 36 280 -32 1044 156 97 15 chr3 158521635 158521904 -69002674 - MER33 DNA MER1_type -33 291 1 465 169 0 0 chr3 158522010 158522081 -69002497 + AluS SINE Alu 1 71 -242 1115 158 61 0 chr3 158523417 158523613 -69000965 - MER3 DNA MER1_type -1 208 1 189 0 0 0 chr3 158523616 158523637 -69000941 + (TAGA)n Simple_repeat Simple_repeat 1 21 0 905 141 7 7 chr3 158523995 158524130 -69000448 + AluJo SINE Alu 1 135 -177 200 133 99 43 chr3 158524611 158524678 -68999900 + MIR SINE MIR 86 146 -62 22 99 0 0 chr3 158524897 158524968 -68999610 + AT_rich Low_complexity Low_complexity 1 71 0 612 302 41 50 chr3 158525142 158525198 -68999380 - L1ME LINE L1 -462 5702 5647 607 220 176 6 chr3 158525198 158525357 -68999221 + MER5A DNA MER1_type 4 189 0 612 302 41 50 chr3 158525357 158525741 -68998837 - L1ME LINE L1 -517 5647 5266 500 301 48 11 chr3 158525911 158526097 -68998481 - L2 LINE L2 -1007 2307 2115 256 287 133 0 chr3 158526194 158526344 -68998234 + L1ME3A LINE L1 5174 5343 -803 545 215 84 77 chr3 158526584 158526845 -68997733 + L1ME3A LINE L1 5908 6170 0 371 264 137 39 chr3 158526882 158527148 -68997430 + L1MC4a LINE L1 5593 5824 -297 767 120 19 0 chr3 158527490 158527598 -68996980 + AluSp/q SINE Alu 200 309 -4 420 295 100 35 chr3 158527604 158527865 -68996713 - L2 LINE L2 -1256 2058 1781 216 0 0 0 chr3 158527866 158527890 -68996688 + (A)n Simple_repeat Simple_repeat 1 24 0 2230 111 10 0 chr3 158527900 158528207 -68996371 + AluSq SINE Alu 1 310 -3 1216 8 0 8 chr3 158528733 158528866 -68995712 - AluY SINE Alu -179 132 1 717 284 129 25 chr3 158528869 158529356 -68995222 + L1M4c LINE L1 928 1363 -5200 2508 57 13 0 chr3 158529356 158529657 -68994921 + AluY SINE Alu 1 305 -6 717 284 129 25 chr3 158529657 158529968 -68994610 + L1M4c LINE L1 1363 1984 -4579 314 71 0 0 chr3 158530008 158530050 -68994528 + AluJ/FLAM SINE Alu 39 80 -222 557 189 180 0 chr3 158530127 158530238 -68994340 - FLAM_C SINE Alu -12 131 1 1314 196 15 4 chr3 158530238 158530498 -68994080 - L1 LINE L1 -1118 5028 4766 2196 102 3 3 chr3 158530499 158530793 -68993785 - AluSg SINE Alu -10 300 7 21 36 0 0 chr3 158531013 158531041 -68993537 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 158531311 158531332 -68993246 + AT_rich Low_complexity Low_complexity 1 21 0 512 205 24 63 chr3 158531685 158531812 -68992766 + FRAM SINE Alu 34 155 -21 381 241 118 37 chr3 158532041 158532278 -68992300 + L1M4c LINE L1 2443 2715 -3667 1685 113 0 13 chr3 158532278 158532542 -68992036 + AluSx SINE Alu 59 319 0 381 241 118 37 chr3 158532542 158532626 -68991952 + L1M4c LINE L1 2715 2791 -3591 231 36 0 0 chr3 158532754 158532782 -68991796 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 712 226 0 0 chr3 158532784 158532899 -68991679 - FLAM_C SINE Alu -17 116 2 2218 81 13 52 chr3 158533021 158533328 -68991250 - AluSg SINE Alu -11 299 5 329 208 52 0 chr3 158533871 158533948 -68990630 - MIR SINE MIR -1 261 181 1998 217 71 74 chr3 158535214 158535874 -68988704 + MER76 LTR ERV 1 658 -30 1305 216 58 45 chr3 158536098 158536477 -68988101 + MER67C LTR ERV1 6 389 -321 1101 162 14 28 chr3 158536474 158536690 -68987888 + MER67C LTR ERV1 498 710 0 * 31 82 0 0 chr3 158536765 158536838 -68987740 + AT_rich Low_complexity Low_complexity 1 73 0 283 250 8 133 chr3 158536929 158537049 -68987529 + MIR SINE MIR 9 113 -149 3067 202 34 30 chr3 158537240 158537885 -68986693 + MER82 DNA MER2_type 1 648 -5 561 315 39 12 chr3 158538004 158538258 -68986320 + L2 LINE L2 2364 2624 -690 371 230 71 18 chr3 158538302 158538415 -68986163 + L2 LINE L2 3164 3282 -31 1963 150 0 0 chr3 158538568 158538848 -68985730 - AluJo SINE Alu -32 280 1 21 0 0 0 chr3 158539529 158539550 -68985028 + AT_rich Low_complexity Low_complexity 1 21 0 2198 101 10 10 chr3 158539550 158539858 -68984720 + AluY SINE Alu 1 308 -3 44406 43 1 9 chr3 158539860 158542941 -68981637 + L1PA4 LINE L1 2 3013 -3142 9235 71 18 113 chr3 158542941 158544469 -68980109 + SVA Other Other 3 1386 0 44406 43 1 9 chr3 158544469 158547589 -68976989 + L1PA4 LINE L1 3013 6155 0 28 0 0 0 chr3 158547589 158547617 -68976961 + AT_rich Low_complexity Low_complexity 1 28 0 22 80 0 0 chr3 158548192 158548242 -68976336 + AT_rich Low_complexity Low_complexity 1 50 0 1875 161 13 13 chr3 158548316 158548626 -68975952 - AluSx SINE Alu -2 310 1 346 283 75 0 chr3 158548630 158548736 -68975842 + L2 LINE L2 3195 3308 -5 867 154 60 35 chr3 158548937 158549138 -68975440 + L1MA7 LINE L1 6086 6291 0 522 223 17 51 chr3 158549151 158549326 -68975252 + L1ME2 LINE L1 5863 6031 -135 998 145 39 11 chr3 158549330 158549509 -68975069 - AluJ SINE Alu -9 303 120 410 71 36 0 chr3 158549510 158549566 -68975012 - U6 snRNA snRNA -3 104 47 2348 74 7 3 chr3 158549580 158549879 -68974699 + AluY SINE Alu 1 300 -11 825 160 8 0 chr3 158549894 158550019 -68974559 - AluJ SINE Alu -186 126 1 520 246 23 0 chr3 158550040 158550170 -68974408 + L1MA10 LINE L1 6195 6327 -7 1931 164 3 0 chr3 158550211 158550509 -68974069 - AluJb SINE Alu -13 299 1 1496 160 39 74 chr3 158550743 158550875 -68973703 + AluJb SINE Alu 1 136 -176 1954 136 3 14 chr3 158550875 158551170 -68973408 + AluSx SINE Alu 1 292 -20 1496 160 39 74 chr3 158551170 158551349 -68973229 + AluJb SINE Alu 136 301 -11 353 335 74 0 chr3 158551772 158551948 -68972630 + L2 LINE L2 3124 3312 -1 300 347 101 0 chr3 158552062 158552225 -68972353 + MIR SINE MIR 14 191 -66 472 296 98 40 chr3 158552866 158553140 -68971438 + MER102b DNA MER1_type 51 340 -1 243 287 119 40 chr3 158553150 158553627 -68970951 - L1M4 LINE L1 -1251 4895 4381 263 297 0 0 chr3 158554106 158554170 -68970408 + (TA)n Simple_repeat Simple_repeat 1 64 0 2591 57 0 0 chr3 158554183 158554479 -68970099 - AluY SINE Alu -15 296 1 3502 151 17 38 chr3 158555025 158555629 -68968949 + Tigger7 DNA MER2_type 1 591 -142 1623 112 0 73 chr3 158555635 158555895 -68968683 + AluSx SINE Alu 58 298 -14 196 396 0 0 chr3 158555915 158556011 -68968567 - L2 LINE L2 -503 2811 2716 242 170 0 21 chr3 158556195 158556242 -68968336 - MIR3 SINE MIR -11 197 152 2110 126 3 0 chr3 158556925 158557218 -68967360 - AluSx SINE Alu -14 298 5 1203 81 0 32 chr3 158557223 158557408 -68967170 + THE1B-int LTR MaLR 1402 1580 0 254 111 0 122 chr3 158557414 158557504 -68967074 + THE1B LTR MaLR 5 83 -281 344 297 81 9 chr3 158557754 158557865 -68966713 + L2 LINE L2 3190 3308 -5 546 242 77 43 chr3 158558723 158558935 -68965643 + L1MC4a LINE L1 5583 5661 -460 2338 94 0 3 chr3 158558935 158559243 -68965335 + AluSc SINE Alu 1 307 -2 546 242 77 43 chr3 158559243 158559395 -68965183 + L1MC4a LINE L1 5661 5806 -315 2260 97 0 0 chr3 158559636 158559925 -68964653 - AluSg SINE Alu -21 289 1 730 215 21 0 chr3 158561077 158561221 -68963357 + MER58A DNA MER1_type 1 147 0 182 242 15 0 chr3 158561594 158561660 -68962918 + CT-rich Low_complexity Low_complexity 5 71 0 46 45 0 0 chr3 158561766 158561833 -68962745 + GC_rich Low_complexity Low_complexity 1 67 0 243 293 37 12 chr3 158562165 158562247 -68962331 + GA-rich Low_complexity Low_complexity 4 87 0 1065 187 15 38 chr3 158562287 158562554 -68962024 - AluY SINE Alu -50 261 1 245 274 88 39 chr3 158563055 158563157 -68961421 + L2 LINE L2 1951 2057 -1257 229 340 64 7 chr3 158563857 158563998 -68960580 + L2 LINE L2 3122 3270 -43 514 313 129 29 chr3 158564714 158565394 -68959184 + L1MC4a LINE L1 6009 6756 -1052 4884 183 40 3 chr3 158566284 158567190 -68957388 + L1MA4 LINE L1 14 952 -4376 583 242 45 15 chr3 158567211 158567409 -68957169 - L1 LINE L1 -2610 3536 3333 1739 131 50 47 chr3 158567484 158567782 -68956796 - AluSx SINE Alu -13 299 1 3345 193 51 68 chr3 158567871 158568344 -68956234 + L1MA4 LINE L1 971 1451 -4877 6252 79 38 15 chr3 158568344 158568681 -68955897 + L1PA14 LINE L1 5048 5376 -785 2004 112 49 0 chr3 158568681 158568967 -68955611 + AluSx SINE Alu 1 300 -12 6252 79 38 15 chr3 158568967 158569698 -68954880 + L1PA14 LINE L1 5376 6144 -17 3345 193 51 68 chr3 158569698 158570208 -68954370 + L1MA4 LINE L1 1451 1937 -4391 1190 195 0 5 chr3 158570208 158570408 -68954170 + AluJ SINE Alu 1 199 -113 4970 182 59 135 chr3 158570410 158572121 -68952457 - MER52A LTR ERV1 -8 1747 197 279 298 36 0 chr3 158572094 158572178 -68952400 - MER52A LTR ERV1 -1666 89 3 * 813 148 0 0 chr3 158572178 158572300 -68952278 + AluJ SINE Alu 188 309 -3 471 219 81 31 chr3 158572312 158572472 -68952106 + L1MA4 LINE L1 1934 2101 -4227 663 221 16 8 chr3 158572480 158572602 -68951976 + AluSq/x SINE Alu 3 125 -188 419 152 51 36 chr3 158572633 158572771 -68951807 + L1MA4 LINE L1 2107 2246 -4082 4919 148 24 20 chr3 158572772 158572976 -68951602 + L1MA4 LINE L1 5611 5813 -669 369 109 0 0 chr3 158572976 158573031 -68951547 + (TATG)n Simple_repeat Simple_repeat 3 57 0 4919 148 24 20 chr3 158573031 158573648 -68950930 + L1MA4 LINE L1 5813 6439 -43 5121 161 38 59 chr3 158573648 158574738 -68949840 + MER11C LTR ERVK 1 1067 -4 4919 148 24 20 chr3 158574738 158574778 -68949800 + L1MA4 LINE L1 6439 6477 -5 2234 121 0 6 chr3 158574936 158575250 -68949328 + AluSx SINE Alu 1 312 0 303 19 38 38 chr3 158575475 158575528 -68949050 + (AAATG)n Simple_repeat Simple_repeat 3 55 0 4746 153 15 12 chr3 158575725 158576456 -68948122 - MER44D DNA MER2_type 0 605 1 1513 179 14 7 chr3 158576479 158576759 -68947819 + L1 LINE L1 3624 3905 -2241 14395 165 79 19 chr3 158577151 158578829 -68945749 + L1PBa LINE L1 1 1577 -5285 2304 106 3 0 chr3 158578829 158579132 -68945446 - AluSp SINE Alu -9 304 1 14395 165 79 19 chr3 158579132 158579933 -68944645 + L1PBa LINE L1 1577 2328 -4534 2313 116 0 0 chr3 158579933 158580243 -68944335 + AluSq SINE Alu 1 310 -3 14395 165 79 19 chr3 158580243 158581667 -68942911 + L1PBa LINE L1 2328 3665 -3197 2388 86 0 3 chr3 158581667 158581970 -68942608 + AluY SINE Alu 1 302 -9 14395 165 79 19 chr3 158581970 158582384 -68942194 + L1PBa LINE L1 3665 4053 -2809 2205 116 0 13 chr3 158582384 158582685 -68941893 + AluSx SINE Alu 1 297 -15 14395 165 79 19 chr3 158582685 158583159 -68941419 + L1PBa LINE L1 4053 5077 -1785 273 306 24 8 chr3 158583768 158583892 -68940686 + L2 LINE L2 2854 2979 -293 1307 165 34 81 chr3 158583962 158584283 -68940295 + AluJb SINE Alu 2 307 -5 431 89 0 0 chr3 158584284 158584340 -68940238 + Alu SINE Alu 1 56 -255 1472 112 5 0 chr3 158584340 158584545 -68940033 + AluSg/x SINE Alu 96 301 -9 2092 134 10 0 chr3 158584546 158584853 -68939725 + AluSx SINE Alu 1 310 -2 357 275 74 26 chr3 158584867 158585056 -68939522 + L2 LINE L2 3116 3313 0 1044 233 6 7 chr3 158585264 158585567 -68939011 + MLT1A1 LTR MaLR 1 396 -32 1848 154 22 22 chr3 158585570 158585882 -68938696 - AluJo SINE Alu 0 312 1 296 118 13 40 chr3 158585883 158585959 -68938619 + (TTC)n Simple_repeat Simple_repeat 2 75 0 2245 121 0 0 chr3 158585965 158586271 -68938307 - AluSx SINE Alu -6 306 1 1099 173 0 0 chr3 158586648 158586821 -68937757 - FRAM SINE Alu -4 172 1 2641 105 14 3 chr3 158587561 158587912 -68936666 - THE1A LTR MaLR 0 355 1 1323 63 23 0 chr3 158587912 158588087 -68936491 - THE1A-int LTR MaLR 0 1580 1402 2025 139 3 3 chr3 158588088 158588389 -68936189 + AluSx SINE Alu 1 301 -11 697 211 0 0 chr3 158588510 158588619 -68935959 + FLAM_C SINE Alu 1 109 -34 30 27 0 0 chr3 158588626 158588663 -68935915 + AT_rich Low_complexity Low_complexity 1 37 0 381 241 118 37 chr3 158588777 158588861 -68935717 - L1MEc LINE L1 -3591 2624 2548 1684 113 0 13 chr3 158588861 158589125 -68935453 - AluSx SINE Alu 0 319 59 381 241 118 37 chr3 158589125 158589362 -68935216 - L1MEc LINE L1 -3667 2548 2276 312 300 86 0 chr3 158589389 158589529 -68935049 - L1MEc LINE L1 -4104 2292 2141 7156 59 21 11 chr3 158589704 158591366 -68933212 + L1PA7 LINE L1 4463 6154 0 1547 181 25 0 chr3 158591367 158591648 -68932930 + L1ME1 LINE L1 5596 5883 -283 1856 180 125 43 chr3 158591937 158592458 -68932120 + MER34B LTR ERV1 11 565 0 2087 133 0 0 chr3 158593236 158593530 -68931048 + AluSg SINE Alu 1 294 -16 5870 120 23 29 chr3 158593530 158594515 -68930063 + L1PB1 LINE L1 4985 5975 -176 2372 101 0 3 chr3 158594515 158594822 -68929756 + AluSc SINE Alu 1 306 -3 8648 76 7 6 chr3 158594823 158595893 -68928685 - MER11C LTR ERVK 0 1071 1 5870 120 23 29 chr3 158595893 158596077 -68928501 + L1PB1 LINE L1 5974 6150 -1 2180 135 0 0 chr3 158596350 158596654 -68927924 + AluSx SINE Alu 1 304 -8 854 83 0 0 chr3 158597188 158597297 -68927281 - L1MB5 LINE L1 -6 6168 6060 21 36 0 0 chr3 158597312 158597340 -68927238 + AT_rich Low_complexity Low_complexity 1 28 0 764 283 64 28 chr3 158597407 158597718 -68926860 + L1MEc LINE L1 1120 1457 -4939 1856 157 27 0 chr3 158597718 158598018 -68926560 + AluSx SINE Alu 1 308 -4 764 283 64 28 chr3 158598018 158598205 -68926373 + L1MEc LINE L1 1457 1636 -4760 618 198 63 0 chr3 158598195 158598321 -68926257 + L1ME1 LINE L1 5467 5600 -566 * 32751 101 15 63 chr3 158598334 158600011 -68924567 + L1PA7 LINE L1 10 1766 -4388 2258 100 7 0 chr3 158600011 158600312 -68924266 + AluY SINE Alu 1 303 -8 32751 101 15 63 chr3 158600312 158605097 -68919481 + L1PA7 LINE L1 1766 6154 0 1555 185 24 0 chr3 158605092 158605379 -68919199 + L1ME1 LINE L1 5590 5883 -283 * 1856 180 125 43 chr3 158605668 158606189 -68918389 + MER34B LTR ERV1 11 565 0 2218 94 3 28 chr3 158606967 158607285 -68917293 + AluSg SINE Alu 1 310 0 1209 220 199 38 chr3 158607817 158607854 -68916724 - L2 LINE L2 -952 2362 2332 2038 152 0 0 chr3 158607854 158608163 -68916415 + AluJb SINE Alu 1 309 -3 1209 220 199 38 chr3 158608163 158608548 -68916030 - L2 LINE L2 -982 2332 1872 274 287 30 43 chr3 158609087 158609251 -68915327 + L2 LINE L2 2732 2893 -421 2319 87 0 29 chr3 158609264 158609573 -68915005 - AluSc SINE Alu -9 300 1 5049 197 68 19 chr3 158610026 158610293 -68914285 - L1 LINE L1 -2568 4640 4388 2208 117 3 0 chr3 158610293 158610584 -68913994 - AluSp SINE Alu -21 292 1 5049 197 68 19 chr3 158610584 158612171 -68912407 - L1 LINE L1 -2820 4388 2655 9732 36 11 2 chr3 158612171 158614063 -68910515 - L1PA5 LINE L1 -3 6151 4251 5049 197 68 19 chr3 158614063 158614407 -68910171 - L1 LINE L1 -4553 2655 2329 3572 223 118 34 chr3 158614427 158615667 -68908911 - L1 LINE L1 -5428 1781 3 497 203 112 90 chr3 158615716 158615827 -68908751 + L1M4 LINE L1 3687 3794 -2352 1739 171 44 0 chr3 158615827 158615949 -68908629 + AluSx SINE Alu 1 116 -196 269 82 20 0 chr3 158615949 158615998 -68908580 + (TAAA)n Simple_repeat Simple_repeat 2 51 0 1739 171 44 0 chr3 158615998 158616168 -68908410 + AluSx SINE Alu 116 306 -6 497 203 112 90 chr3 158616168 158616375 -68908203 + L1M4 LINE L1 3794 4011 -2135 382 64 0 0 chr3 158616372 158616419 -68908159 - L1PA14 LINE L1 -98 6063 6017 * 775 71 44 9 chr3 158616419 158616530 -68908048 + L1PA14 LINE L1 6044 6160 -1 1286 165 33 0 chr3 158616538 158616750 -68907828 + Tigger2 DNA MER2_type 315 533 -2185 1723 173 38 0 chr3 158616822 158616941 -68907637 + AluJb SINE Alu 1 114 -198 207 0 0 0 chr3 158616941 158616964 -68907614 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1723 173 38 0 chr3 158616964 158617133 -68907445 + AluJb SINE Alu 114 300 -12 2095 123 11 7 chr3 158617244 158617548 -68907030 + AluSx SINE Alu 1 305 0 449 144 17 220 chr3 158617554 158617624 -68906954 - MER5A DNA MER1_type -51 138 56 2045 118 14 0 chr3 158617624 158617920 -68906658 - AluSx SINE Alu -8 304 5 449 144 17 220 chr3 158617920 158617940 -68906638 - MER5A DNA MER1_type -133 56 34 1687 105 43 4 chr3 158617940 158618198 -68906380 + L1MA2 LINE L1 6037 6304 0 449 144 17 220 chr3 158618198 158618279 -68906299 - MER5A DNA MER1_type -155 34 1 472 302 41 12 chr3 158618304 158618549 -68906029 + L1M4 LINE L1 4402 4653 -1493 317 239 37 73 chr3 158618554 158618663 -68905915 + MIR SINE MIR 9 113 -149 24 67 0 0 chr3 158620032 158620077 -68904501 + AT_rich Low_complexity Low_complexity 1 45 0 2124 111 14 0 chr3 158622081 158622369 -68902209 - AluSx SINE Alu -20 292 1 213 268 18 0 chr3 158622372 158622428 -68902150 - MIR3 SINE MIR -44 164 108 220 331 105 8 chr3 158622508 158622632 -68901946 - MIR SINE MIR -74 188 53 21 36 0 0 chr3 158622768 158622796 -68901782 + AT_rich Low_complexity Low_complexity 1 28 0 1112 219 214 52 chr3 158623422 158623469 -68901109 - HAL1 LINE L1 -33 2474 2436 1698 188 0 3 chr3 158623469 158623776 -68900802 + AluJo SINE Alu 1 312 0 1112 219 214 52 chr3 158623776 158624347 -68900231 - HAL1 LINE L1 -71 2436 1714 965 185 100 5 chr3 158624347 158624547 -68900031 - MER20 DNA MER1_type 0 219 1 1112 219 214 52 chr3 158624547 158624671 -68899907 - HAL1 LINE L1 -793 1714 1611 1142 92 0 18 chr3 158624671 158624835 -68899743 + AluSg/x SINE Alu 138 298 -14 647 229 20 7 chr3 158624838 158624991 -68899587 - HAL1 LINE L1 -910 1597 1443 234 233 83 0 chr3 158624991 158625051 -68899527 - MLT2F LTR ERVL -115 548 484 994 66 0 0 chr3 158625166 158625288 -68899290 - AluY SINE Alu -2 309 188 226 244 33 33 chr3 158625288 158625378 -68899200 - HAL1 LINE L1 -1258 1249 1160 421 270 32 24 chr3 158625455 158625581 -68898997 + MIR SINE MIR 109 235 -27 370 260 102 51 chr3 158625658 158625835 -68898743 - HAL1 LINE L1 -1476 1031 846 1476 166 86 10 chr3 158625835 158626136 -68898442 + L1MA8 LINE L1 5956 6279 -12 896 283 175 42 chr3 158626128 158626860 -68897718 - HAL1 LINE L1 -1640 867 59 * 6512 28 5 0 chr3 158627415 158628216 -68896362 - L1PA3 LINE L1 0 6155 5351 2753 20 0 0 chr3 158628214 158628561 -68896017 + L1PA3 LINE L1 4996 5342 -804 * 2343 89 0 0 chr3 158628690 158628982 -68895596 - AluSq SINE Alu -21 292 1 1388 160 13 17 chr3 158630925 158631162 -68893416 - AluJb SINE Alu -68 244 9 187 320 0 0 chr3 158631232 158631282 -68893296 + L2 LINE L2 3179 3228 -85 381 297 59 25 chr3 158631417 158631479 -68893099 - L1ME LINE L1 -732 5432 5374 1460 184 20 38 chr3 158631479 158631772 -68892806 - AluJo SINE Alu -22 290 3 381 297 59 25 chr3 158631772 158631934 -68892644 - L1ME LINE L1 -790 5374 5209 249 221 66 148 chr3 158632018 158632140 -68892438 - L2 LINE L2 0 3272 3161 2131 113 7 29 chr3 158632220 158632530 -68892048 + AluSq SINE Alu 1 303 -10 749 295 55 12 chr3 158633138 158633413 -68891165 - L1PB4 LINE L1 -9 6147 5862 1845 172 14 3 chr3 158633570 158633867 -68890711 + AluJb SINE Alu 1 300 -12 700 200 138 0 chr3 158634908 158635068 -68889510 - MER58A DNA MER1_type -1 223 42 188 265 69 49 chr3 158635162 158635264 -68889314 - L3 LINE CR1 -140 1437 1334 28 29 0 0 chr3 158635376 158635411 -68889167 + AT_rich Low_complexity Low_complexity 1 35 0 296 315 122 21 chr3 158635503 158635709 -68888869 + MIR SINE MIR 1 230 -32 406 344 116 55 chr3 158636018 158636094 -68888484 + L1MEd LINE L1 245 315 -5804 3721 78 10 6 chr3 158636094 158636605 -68887973 - LTR10D LTR ERV1 0 513 1 406 344 116 55 chr3 158636605 158637039 -68887539 + L1MEd LINE L1 315 786 -5333 2305 85 3 16 chr3 158637067 158637373 -68887205 + AluSx SINE Alu 1 302 -10 329 273 82 11 chr3 158637575 158637758 -68886820 + L1MEd LINE L1 1048 1243 -4876 360 273 141 53 chr3 158637773 158638000 -68886578 + HAL1 LINE L1 1363 1609 -898 5494 227 57 21 chr3 158638000 158638125 -68886453 + L1MB8 LINE L1 31 150 -6496 297 75 0 0 chr3 158638125 158638165 -68886413 + (CA)n Simple_repeat Simple_repeat 2 41 0 5494 227 57 21 chr3 158638165 158639216 -68885362 + L1MB8 LINE L1 150 1308 -5338 1912 127 3 11 chr3 158639216 158639522 -68885056 + AluSx SINE Alu 1 304 0 5494 227 57 21 chr3 158639522 158640193 -68884385 + L1MB8 LINE L1 1308 1954 -4692 3667 184 36 44 chr3 158640186 158641458 -68883120 + L1MB8 LINE L1 5191 6663 -13 * 226 133 0 147 chr3 158641467 158641501 -68883077 + HAL1 LINE L1 1583 1602 -905 2134 106 7 7 chr3 158641501 158641802 -68882776 - AluSq SINE Alu -12 301 1 226 133 0 147 chr3 158641802 158641842 -68882736 + HAL1 LINE L1 1602 1646 -861 2269 88 7 3 chr3 158642059 158642353 -68882225 + AluSp SINE Alu 1 295 -18 1127 181 15 73 chr3 158642435 158642694 -68881884 + AluJo SINE Alu 1 244 -68 470 196 31 0 chr3 158642720 158642817 -68881761 + FRAM SINE Alu 56 155 -21 270 245 118 37 chr3 158643046 158643283 -68881295 + L1M4 LINE L1 2705 2977 -3667 1689 113 0 13 chr3 158643283 158643547 -68881031 + AluSx SINE Alu 59 319 0 270 245 118 37 chr3 158643547 158643631 -68880947 + L1M4 LINE L1 2977 3053 -3591 231 36 0 0 chr3 158643759 158643787 -68880791 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 672 226 0 0 chr3 158643789 158643904 -68880674 - FLAM_C SINE Alu -17 116 2 1796 141 67 3 chr3 158644026 158644193 -68880385 - AluJb SINE Alu -11 301 107 297 0 0 0 chr3 158644193 158644226 -68880352 + (TTA)n Simple_repeat Simple_repeat 2 34 0 1796 141 67 3 chr3 158644226 158644341 -68880237 - AluJb SINE Alu -205 107 1 369 272 218 27 chr3 158644355 158644528 -68880050 + L1M4 LINE L1 3581 3720 -2924 2063 115 7 3 chr3 158644528 158644832 -68879746 + AluSx SINE Alu 5 309 -3 369 272 218 27 chr3 158644832 158644919 -68879659 + L1M4 LINE L1 3720 3891 -2753 25 31 0 0 chr3 158645024 158645056 -68879522 + AT_rich Low_complexity Low_complexity 1 32 0 2098 112 7 10 chr3 158645132 158645437 -68879141 - AluSq SINE Alu -9 304 1 2056 137 3 0 chr3 158645491 158645790 -68878788 - AluSx SINE Alu -7 305 6 229 343 53 35 chr3 158647193 158647362 -68877216 - MIR SINE MIR -19 243 72 2036 145 7 3 chr3 158647522 158647826 -68876752 + AluJb SINE Alu 3 307 -5 24 67 0 0 chr3 158648813 158648858 -68875720 + AT_rich Low_complexity Low_complexity 1 45 0 1910 128 0 21 chr3 158649589 158649877 -68874701 + AluSx SINE Alu 30 311 -1 2007 144 0 7 chr3 158650312 158650610 -68873968 + AluSx SINE Alu 1 296 -16 2254 131 0 0 chr3 158650614 158650919 -68873659 + AluSx SINE Alu 1 305 -7 545 330 24 58 chr3 158651820 158651928 -68872650 - L2 LINE L2 -500 2814 2704 1650 167 53 18 chr3 158651928 158652210 -68872368 - AluJo SINE Alu -20 292 1 545 330 24 58 chr3 158652210 158652395 -68872183 - L2 LINE L2 -610 2704 2531 2433 76 0 3 chr3 158652675 158652978 -68871600 + AluSg SINE Alu 1 302 -8 568 115 46 0 chr3 158653577 158653664 -68870914 - AluSx SINE Alu -24 285 195 332 224 0 0 chr3 158653682 158653749 -68870829 + MLT1J LTR MaLR 125 191 -320 186 43 0 0 chr3 158653783 158653806 -68870772 + (TCCCC)n Simple_repeat Simple_repeat 1 23 0 1412 98 26 0 chr3 158653851 158654045 -68870533 - AluSx SINE Alu -113 199 1 318 135 14 27 chr3 158654680 158654754 -68869824 + A-rich Low_complexity Low_complexity 3 75 0 1187 15 0 8 chr3 158655570 158655703 -68868875 - AluY SINE Alu -179 132 1 384 317 41 9 chr3 158655706 158655928 -68868650 + L1M4c LINE L1 929 1269 -5113 556 283 117 23 chr3 158655971 158656192 -68868386 + L1M4c LINE L1 1405 1604 -4959 2364 65 13 26 chr3 158656192 158656502 -68868076 + AluY SINE Alu 1 306 -5 556 283 117 23 chr3 158656502 158656793 -68867785 + L1M4c LINE L1 1604 1965 -4598 297 71 0 0 chr3 158656852 158656894 -68867684 + AluJ/FLAM SINE Alu 39 80 -222 511 189 180 0 chr3 158656971 158657082 -68867496 - FLAM_C SINE Alu -12 131 1 3958 190 24 47 chr3 158657083 158657343 -68867235 - L1 LINE L1 -1119 5027 4762 2221 100 7 0 chr3 158657343 158657642 -68866936 - AluY SINE Alu -10 301 1 3958 190 24 47 chr3 158657642 158657704 -68866874 - L1 LINE L1 -1384 4762 4700 1739 190 3 7 chr3 158657704 158658004 -68866574 - AluJo SINE Alu -13 299 1 3958 190 24 47 chr3 158658004 158658906 -68865672 - L1 LINE L1 -1446 4700 3904 1634 136 64 72 chr3 158658906 158659282 -68865296 + THE1C LTR MaLR 1 373 -2 3958 190 24 47 chr3 158659282 158659618 -68864960 - L1 LINE L1 -2242 3904 3562 2036 129 0 4 chr3 158659821 158660146 -68864432 + AluSc SINE Alu 1 324 0 2421 90 0 0 chr3 158660271 158660570 -68864008 - AluSg SINE Alu -11 299 1 23 33 0 0 chr3 158660640 158660670 -68863908 + AT_rich Low_complexity Low_complexity 1 30 0 2019 123 0 3 chr3 158660873 158661158 -68863420 - AluSx SINE Alu -28 284 1 8924 89 24 0 chr3 158661159 158662412 -68862166 - THE1A-int LTR MaLR -297 1283 1 2613 99 6 0 chr3 158662412 158662765 -68861813 - THE1A LTR MaLR 0 355 1 2455 59 3 28 chr3 158663022 158663343 -68861235 + AluSp SINE Alu 1 313 0 1219 220 199 38 chr3 158663875 158663912 -68860666 - L2 LINE L2 -952 2362 2332 2045 152 0 0 chr3 158663912 158664221 -68860357 + AluJb SINE Alu 1 309 -3 1219 220 199 38 chr3 158664221 158664606 -68859972 - L2 LINE L2 -982 2332 1872 1350 139 32 0 chr3 158664932 158665148 -68859430 - MER46A DNA MER2_type -13 223 1 21 36 0 0 chr3 158665238 158665266 -68859312 + AT_rich Low_complexity Low_complexity 1 28 0 2431 80 0 0 chr3 158666103 158666404 -68858174 - AluY SINE Alu -10 301 1 246 212 15 0 chr3 158667023 158667089 -68857489 - MER103 DNA DNA -89 77 11 279 281 46 46 chr3 158667563 158667716 -68856862 + L1M4 LINE L1 1521 1673 -4869 391 336 28 39 chr3 158667756 158668270 -68856308 + L1M4 LINE L1 1986 2563 -4262 19565 98 12 12 chr3 158668302 158671267 -68853311 + L1P LINE L1 11 2976 -3170 3234 52 7 0 chr3 158671249 158671671 -68852907 + L1PA5 LINE L1 5719 6143 -11 * 2105 135 0 3 chr3 158671694 158671991 -68852587 + AluSg SINE Alu 1 296 -14 262 188 183 43 chr3 158671996 158672170 -68852408 + L1M4 LINE L1 2584 2729 -3915 484 174 54 0 chr3 158672362 158672454 -68852124 + MER2 DNA MER2_type 3 99 -246 267 317 0 0 chr3 158672477 158672537 -68852041 + MER2 DNA MER2_type 285 344 -1 15390 141 122 32 chr3 158673134 158675326 -68849252 + L1M1 LINE L1 16 2009 -5556 2198 102 20 0 chr3 158675326 158675629 -68848949 + AluSx SINE Alu 4 312 0 15390 141 122 32 chr3 158675629 158675739 -68848839 + L1M1 LINE L1 2009 2108 -5457 1906 145 33 0 chr3 158675739 158676042 -68848536 + AluSq SINE Alu 1 313 0 15390 141 122 32 chr3 158676042 158676510 -68848068 + L1M1 LINE L1 2108 2532 -5033 2335 90 0 7 chr3 158676510 158676809 -68847769 + AluSg SINE Alu 3 299 -11 1948 127 48 0 chr3 158676814 158677105 -68847473 + AluSg SINE Alu 1 305 -5 15390 141 122 32 chr3 158677105 158680029 -68844549 + L1M1 LINE L1 2535 6231 -1334 3582 211 29 13 chr3 158680214 158681085 -68843493 + L1MA2 LINE L1 4403 5287 -859 1250 88 41 6 chr3 158681085 158681255 -68843323 - AluSg/x SINE Alu -19 293 118 4308 124 16 3 chr3 158681255 158681893 -68842685 + L1MA2 LINE L1 5659 6304 0 3626 206 59 50 chr3 158682348 158682416 -68842162 + L1ME1 LINE L1 4636 4702 -1464 1639 168 29 7 chr3 158682416 158682696 -68841882 + AluJo SINE Alu 1 286 -26 3626 206 59 50 chr3 158682696 158684131 -68840447 + L1ME1 LINE L1 4702 6161 -5 547 278 134 54 chr3 158684146 158684288 -68840290 + HAL1b LINE L1 221 350 -998 1766 176 7 16 chr3 158684288 158684595 -68839983 + AluJb SINE Alu 1 304 -8 547 278 134 54 chr3 158684595 158685003 -68839575 + HAL1b LINE L1 350 815 -533 519 255 128 52 chr3 158685094 158685499 -68839079 + L1MC5 LINE L1 6413 6774 -1034 1414 134 0 48 chr3 158685518 158685749 -68838829 + AluSg/x SINE Alu 84 303 -7 1886 119 96 44 chr3 158686004 158686347 -68838231 + MER46B DNA MER2_type 1 236 0 706 224 99 5 chr3 158686349 158686541 -68838037 + MIR SINE MIR 28 237 -25 342 300 107 0 chr3 158686575 158686715 -68837863 + MIR SINE MIR 81 235 -27 222 219 0 0 chr3 158687039 158687080 -68837498 + CT-rich Low_complexity Low_complexity 3 43 0 21 0 0 0 chr3 158687642 158687663 -68836915 + AT_rich Low_complexity Low_complexity 1 21 0 2327 73 0 0 chr3 158688151 158688438 -68836140 - AluSx SINE Alu -25 287 1 437 303 96 1 chr3 158688766 158688956 -68835622 - MIR SINE MIR -32 230 30 438 279 56 22 chr3 158690231 158690410 -68834168 - MLT1L LTR MaLR 0 615 431 330 250 22 125 chr3 158691062 158691087 -68833491 - L2 LINE L2 0 3313 3287 2409 78 3 0 chr3 158691087 158691382 -68833196 + AluSp SINE Alu 1 296 -17 330 250 22 125 chr3 158691382 158691633 -68832945 - L2 LINE L2 -26 3287 3014 2071 74 37 37 chr3 158691739 158692037 -68832541 - AluY SINE Alu -13 298 1 252 300 100 25 chr3 158692209 158692329 -68832249 + L2 LINE L2 3171 3299 -14 4343 42 17 0 chr3 158692332 158692814 -68831764 - LTR2B LTR ERV1 0 490 1 908 245 35 42 chr3 158692949 158693210 -68831368 - MIR SINE MIR 0 262 4 2341 202 73 31 chr3 158693308 158693828 -68830750 - MLT1F LTR MaLR 0 542 1 470 258 53 33 chr3 158693828 158693979 -68830599 + L2 LINE L2 3158 3311 -2 733 200 8 8 chr3 158694079 158694204 -68830374 - FLAM_C SINE Alu -8 125 1 2190 111 3 17 chr3 158694571 158694707 -68829871 + AluSx SINE Alu 1 137 -175 2493 60 7 0 chr3 158694707 158695009 -68829569 + AluY SINE Alu 1 304 -7 2190 111 3 17 chr3 158695009 158695169 -68829409 + AluSx SINE Alu 137 293 -19 625 197 90 0 chr3 158695691 158695813 -68828765 + FLAM_A SINE Alu 10 142 0 415 194 30 15 chr3 158695819 158695953 -68828625 + GA-rich Low_complexity Low_complexity 5 140 0 200 188 0 0 chr3 158695955 158695987 -68828591 + polypurine Low_complexity Low_complexity 1 32 0 2482 66 3 3 chr3 158696076 158696379 -68828199 - AluSp SINE Alu -10 303 1 27 0 0 0 chr3 158696769 158696796 -68827782 + GC_rich Low_complexity Low_complexity 1 27 0 2051 139 3 7 chr3 158697112 158697414 -68827164 - AluJb SINE Alu -11 301 1 2224 184 45 28 chr3 158697445 158697787 -68826791 + L1M4 LINE L1 4816 5151 -1029 1917 150 3 7 chr3 158697787 158698087 -68826491 + AluJo SINE Alu 1 299 -13 2224 184 45 28 chr3 158698087 158698252 -68826326 + L1M4 LINE L1 5151 5331 -849 2147 117 0 10 chr3 158698252 158698560 -68826018 + AluSx SINE Alu 1 305 -7 2224 184 45 28 chr3 158698560 158698600 -68825978 + L1M4 LINE L1 5331 5369 -811 2092 115 7 10 chr3 158698614 158698919 -68825659 + AluSq SINE Alu 1 304 -9 23 62 0 0 chr3 158698995 158699027 -68825551 + AT_rich Low_complexity Low_complexity 1 32 0 4143 142 20 129 chr3 158699220 158700370 -68824208 - L1 LINE L1 -1568 4578 3554 22 0 0 0 chr3 158700911 158700933 -68823645 + AT_rich Low_complexity Low_complexity 1 22 0 398 293 26 47 chr3 158701412 158701603 -68822975 - L1ME3A LINE L1 -21 6149 5963 2308 107 0 0 chr3 158703218 158703527 -68821051 + AluSq SINE Alu 1 309 -4 1690 151 14 34 chr3 158703710 158704032 -68820546 + AluJb SINE Alu 1 316 0 1290 178 37 0 chr3 158704035 158704249 -68820329 + AluSg/x SINE Alu 83 304 -6 1038 229 184 28 chr3 158704522 158704990 -68819588 + MLT1G LTR MaLR 50 590 0 2458 80 0 3 chr3 158706386 158706687 -68817891 - AluY SINE Alu -11 300 1 1965 152 0 10 chr3 158706687 158706997 -68817581 - AluJb SINE Alu -5 307 1 901 120 15 15 chr3 158707001 158707134 -68817444 - FLAM_C SINE Alu 0 133 1 2045 126 3 7 chr3 158707266 158707551 -68817027 - AluSx SINE Alu -15 297 14 2372 104 0 0 chr3 158707566 158707874 -68816704 - AluSc SINE Alu -1 308 1 1466 162 29 70 chr3 158707967 158708281 -68816297 - AluJo SINE Alu 0 312 12 1657 193 0 7 chr3 158708328 158708629 -68815949 + AluJo SINE Alu 14 312 0 1353 213 0 37 chr3 158708639 158708764 -68815814 + AluJo SINE Alu 1 129 -183 2242 81 3 10 chr3 158708764 158709062 -68815516 - AluSx SINE Alu -16 296 1 1353 213 0 37 chr3 158709062 158709236 -68815342 + AluJo SINE Alu 129 289 -23 22 35 0 0 chr3 158709372 158709401 -68815177 + AT_rich Low_complexity Low_complexity 1 29 0 644 245 151 49 chr3 158709843 158710213 -68814365 + MLT1J2 LTR MaLR 44 508 -3 1777 159 17 26 chr3 158710584 158710886 -68813692 - AluJo SINE Alu -9 303 5 443 223 37 25 chr3 158711125 158711313 -68813265 + L1ME3A LINE L1 5270 5454 -702 1988 133 35 0 chr3 158711417 158711703 -68812875 + AluSx SINE Alu 1 296 -16 9492 75 13 54 chr3 158711705 158713149 -68811429 + SVA Other Other 1 1385 -1 276 244 96 37 chr3 158713236 158713371 -68811207 + L1ME3A LINE L1 5781 5923 -247 221 0 0 33 chr3 158713400 158713430 -68811148 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 2079 102 39 7 chr3 158713670 158713953 -68810625 - AluSx SINE Alu -20 292 1 26 64 0 0 chr3 158713955 158714002 -68810576 + AT_rich Low_complexity Low_complexity 1 47 0 1237 102 6 0 chr3 158714525 158714692 -68809886 + AluSg/x SINE Alu 133 300 -10 2022 142 0 0 chr3 158715230 158715519 -68809059 - AluSx SINE Alu -13 299 11 48 85 0 0 chr3 158715652 158715746 -68808832 + GC_rich Low_complexity Low_complexity 1 94 0 24 32 0 0 chr3 158715774 158715805 -68808773 + GC_rich Low_complexity Low_complexity 1 31 0 204 97 0 0 chr3 158715807 158715838 -68808740 + (CGGGG)n Simple_repeat Simple_repeat 4 34 0 30 0 0 0 chr3 158715853 158715883 -68808695 + GC_rich Low_complexity Low_complexity 1 30 0 25 65 0 0 chr3 158715916 158715962 -68808616 + GC_rich Low_complexity Low_complexity 1 46 0 1061 64 6 18 chr3 158716045 158716216 -68808362 + (TC)n Simple_repeat Simple_repeat 1 169 0 239 281 83 88 chr3 158716325 158716553 -68808025 - L1ME LINE L1 -379 5742 5516 23 33 0 0 chr3 158717011 158717041 -68807537 + AT_rich Low_complexity Low_complexity 1 30 0 2033 122 3 7 chr3 158717162 158717458 -68807120 - AluSx SINE Alu -17 295 1 188 237 51 68 chr3 158717615 158717674 -68806904 + L2 LINE L2 3251 3308 -5 424 127 63 0 chr3 158717860 158717939 -68806639 - L1MB8 LINE L1 0 6178 6095 4027 172 28 61 chr3 158717945 158718119 -68806459 - L1MB4 LINE L1 -1 6179 6001 2463 165 28 28 chr3 158718119 158718550 -68806028 + MSTB1 LTR MaLR 1 431 -1 4027 172 28 61 chr3 158718550 158718671 -68805907 - L1MB4 LINE L1 -179 6001 5878 2641 33 0 3 chr3 158718671 158718973 -68805605 - AluY SINE Alu -10 301 1 4027 172 28 61 chr3 158718973 158719096 -68805482 - L1MB4 LINE L1 -302 5878 5752 265 114 0 0 chr3 158719096 158719131 -68805447 + U2 snRNA snRNA 1 35 -153 4027 172 28 61 chr3 158719131 158719578 -68805000 - L1MB4 LINE L1 -428 5752 5292 2310 96 0 16 chr3 158719578 158719891 -68804687 - AluSq SINE Alu -5 308 1 4027 172 28 61 chr3 158719891 158720056 -68804522 - L1MB4 LINE L1 -888 5292 5123 1901 153 3 7 chr3 158720056 158720356 -68804222 - AluJo SINE Alu -13 299 1 4027 172 28 61 chr3 158720356 158720698 -68803880 - L1MB4 LINE L1 -1057 5123 4816 2035 142 3 7 chr3 158720729 158721031 -68803547 + AluJb SINE Alu 1 301 -11 1879 178 0 0 chr3 158721232 158721530 -68803048 + AluJb SINE Alu 1 298 -14 2339 148 28 3 chr3 158721536 158721893 -68802685 - MER47A DNA MER2_type 0 366 1 1446 187 78 0 chr3 158722942 158723226 -68801352 - AluJo SINE Alu 0 312 7 345 83 71 0 chr3 158723942 158724026 -68800552 + (TA)n Simple_repeat Simple_repeat 1 90 0 326 95 0 0 chr3 158724035 158724077 -68800501 + Alu SINE Alu 245 286 -16 264 137 0 0 chr3 158724087 158724138 -68800440 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 211 27 27 27 chr3 158724206 158724243 -68800335 + (TA)n Simple_repeat Simple_repeat 1 37 0 352 71 0 0 chr3 158724244 158724286 -68800292 - Alu SINE Alu -16 286 245 242 130 29 29 chr3 158724301 158724370 -68800208 + (TA)n Simple_repeat Simple_repeat 2 70 0 287 114 24 54 chr3 158724391 158724558 -68800020 + (TA)n Simple_repeat Simple_repeat 1 162 0 1015 135 0 41 chr3 158724562 158724732 -68799846 - AluJo SINE Alu -26 286 124 1930 143 0 17 chr3 158724955 158725256 -68799322 + AluSx SINE Alu 1 296 -16 2236 131 0 0 chr3 158725260 158725565 -68799013 + AluSx SINE Alu 1 305 -7 522 330 24 58 chr3 158726466 158726574 -68798004 - L2 LINE L2 -500 2814 2704 1626 167 53 18 chr3 158726574 158726856 -68797722 - AluJo SINE Alu -20 292 1 522 330 24 58 chr3 158726856 158727041 -68797537 - L2 LINE L2 -610 2704 2531 2440 76 0 3 chr3 158727321 158727624 -68796954 + AluSg SINE Alu 1 302 -8 604 115 46 0 chr3 158728223 158728310 -68796268 - AluSx SINE Alu -24 288 198 360 224 0 0 chr3 158728328 158728395 -68796183 + MLT1J LTR MaLR 125 191 -320 186 43 0 0 chr3 158728429 158728452 -68796126 + (TCCCC)n Simple_repeat Simple_repeat 1 23 0 1413 98 26 0 chr3 158728497 158728691 -68795887 - AluSx SINE Alu -113 199 1 339 122 14 27 chr3 158729326 158729400 -68795178 + (GAAAA)n Simple_repeat Simple_repeat 3 75 0 183 184 0 0 chr3 158729826 158729864 -68794714 + GA-rich Low_complexity Low_complexity 3 40 0 1791 188 33 14 chr3 158730497 158730865 -68793713 + THE1C LTR MaLR 1 375 0 408 253 65 9 chr3 158731996 158732182 -68792396 + L1ME3A LINE L1 5681 5875 -295 1784 150 7 7 chr3 158732207 158732500 -68792078 - AluJb SINE Alu -19 293 1 2255 99 0 3 chr3 158732512 158732805 -68791773 - AluSx SINE Alu -20 292 1 473 0 18 0 chr3 158733042 158733099 -68791479 + (TA)n Simple_repeat Simple_repeat 2 59 0 2638 209 41 13 chr3 158733153 158733694 -68790884 + MER68 LTR ERV1 1 556 -6 3402 170 113 52 chr3 158734247 158734863 -68789715 + MER106B DNA MER1_type 54 631 -428 1817 113 13 80 chr3 158734863 158735174 -68789404 - AluSq SINE Alu -22 291 2 3402 170 113 52 chr3 158735174 158735288 -68789290 + MER106B DNA MER1_type 631 737 -322 1833 138 20 36 chr3 158735288 158735592 -68788986 - AluJo SINE Alu -13 299 1 3402 170 113 52 chr3 158735592 158735808 -68788770 + MER106B DNA MER1_type 737 1059 0 27 0 0 0 chr3 158736114 158736141 -68788437 + AT_rich Low_complexity Low_complexity 1 27 0 1679 163 10 31 chr3 158736528 158736848 -68787730 - AluJb SINE Alu 0 314 1 1833 169 14 0 chr3 158736849 158737139 -68787439 - AluJb SINE Alu -18 294 1 30 0 0 0 chr3 158738263 158738293 -68786285 + AT_rich Low_complexity Low_complexity 1 30 0 882 125 0 29 chr3 158738469 158738605 -68785973 + AluSq/x SINE Alu 1 132 -181 1340 206 55 167 chr3 158738678 158739024 -68785554 + L1MC4 LINE L1 6459 6683 -1359 1646 153 0 67 chr3 158739024 158739324 -68785254 + AluJo SINE Alu 1 280 -32 1340 206 55 167 chr3 158739324 158739702 -68784876 + L1MC4 LINE L1 6683 7102 -940 544 138 0 0 chr3 158739717 158739797 -68784781 + FRAM SINE Alu 72 151 -25 459 0 0 0 chr3 158739797 158739848 -68784730 + (TAGA)n Simple_repeat Simple_repeat 2 52 0 2223 241 74 42 chr3 158739849 158740605 -68783973 + L1MC4 LINE L1 7088 7867 -175 2398 78 3 7 chr3 158740605 158740914 -68783664 + AluSc SINE Alu 1 308 -1 186 118 0 0 chr3 158741033 158741067 -68783511 + (TA)n Simple_repeat Simple_repeat 1 34 0 1364 156 130 22 chr3 158741205 158741474 -68783104 - AluJo SINE Alu -4 298 1 21 57 0 0 chr3 158741831 158741866 -68782712 + AT_rich Low_complexity Low_complexity 1 35 0 349 270 0 0 chr3 158742655 158742744 -68781834 + L1MC4 LINE L1 6614 6702 -1340 1135 275 45 20 chr3 158742820 158743176 -68781402 + MLT1J LTR MaLR 1 365 -146 559 162 57 0 chr3 158744059 158744164 -68780414 - FLAM_A SINE Alu -12 130 20 279 0 0 0 chr3 158744255 158744286 -68780292 + (A)n Simple_repeat Simple_repeat 1 31 0 1619 193 7 3 chr3 158744841 158745136 -68779442 - AluJo SINE Alu -16 296 1 619 228 60 13 chr3 158745186 158745335 -68779243 + FRAM SINE Alu 2 157 -9 244 350 98 56 chr3 158745694 158745738 -68778840 - MIR3 SINE MIR -58 150 109 2383 80 7 0 chr3 158745738 158746040 -68778538 - AluSp SINE Alu -9 304 1 244 350 98 56 chr3 158746040 158746138 -68778440 - MIR3 SINE MIR -99 109 2 2116 136 13 0 chr3 158747336 158747644 -68776934 - AluJb SINE Alu 0 312 1 657 197 0 31 chr3 158747701 158747828 -68776750 - FLAM_A SINE Alu -10 123 1 694 179 0 0 chr3 158748049 158748155 -68776423 - FLAM_C SINE Alu -27 116 11 402 273 116 25 chr3 158748169 158748367 -68776211 + L1MC4a LINE L1 5513 5728 -2080 345 304 39 33 chr3 158748442 158748623 -68775955 + L1MC4a LINE L1 5842 6023 -1785 1660 141 18 39 chr3 158748976 158749260 -68775318 + AluJb SINE Alu 1 278 -34 180 0 0 0 chr3 158749263 158749283 -68775295 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 260 264 169 20 chr3 158749684 158749832 -68774746 + MIR SINE MIR 53 222 -40 2242 99 0 0 chr3 158749883 158750176 -68774402 + AluY SINE Alu 1 293 -18 2422 68 3 3 chr3 158750376 158750683 -68773895 + AluSp SINE Alu 1 307 -6 570 122 133 10 chr3 158750926 158751024 -68773554 + FLAM_C SINE Alu 10 119 -24 192 111 0 0 chr3 158751024 158751060 -68773518 + (TAAAA)n Simple_repeat Simple_repeat 2 37 0 34 84 0 0 chr3 158751114 158751197 -68773381 + AT_rich Low_complexity Low_complexity 1 83 0 2119 128 7 0 chr3 158751648 158751944 -68772634 - AluSx SINE Alu -14 298 1 856 154 0 0 chr3 158752260 158752390 -68772188 - FLAM_C SINE Alu -3 130 1 2164 117 3 3 chr3 158752468 158752768 -68771810 + AluSg SINE Alu 1 300 -10 869 282 108 0 chr3 158752919 158753224 -68771354 + MER46C DNA MER2_type 1 338 0 33 0 0 0 chr3 158754799 158754832 -68769746 + AT_rich Low_complexity Low_complexity 1 33 0 400 133 78 22 chr3 158755054 158755144 -68769434 + L1MC5 LINE L1 7835 7929 -32 2258 116 7 0 chr3 158755691 158756001 -68768577 + AluSx SINE Alu 1 312 0 2334 96 0 3 chr3 158756052 158756353 -68768225 + AluSc SINE Alu 1 300 -9 6258 88 22 44 chr3 158756613 158758001 -68766577 - L1PA14 LINE L1 0 6161 4776 1928 130 4 0 chr3 158758315 158758585 -68765993 - AluSx SINE Alu -5 307 37 195 307 74 51 chr3 158759221 158759517 -68765061 + L2 LINE L2 720 1022 -2292 1885 158 0 13 chr3 158759661 158759977 -68764601 + AluJb SINE Alu 1 312 0 2105 124 0 7 chr3 158760244 158760542 -68764036 - AluSq SINE Alu -17 296 1 324 0 0 0 chr3 158761299 158761335 -68763243 + (CA)n Simple_repeat Simple_repeat 2 37 0 205 244 0 0 chr3 158761617 158761662 -68762916 + MIR SINE MIR 218 262 0 1811 159 3 0 chr3 158762348 158762638 -68761940 + AluSx SINE Alu 3 293 -19 2439 252 77 41 chr3 158763053 158763808 -68760770 - MER21B LTR ERV1 -60 803 22 418 237 18 26 chr3 158763803 158763917 -68760661 - MER21B LTR ERV1 -750 113 1 * 215 93 209 0 chr3 158764012 158764055 -68760523 - L2 LINE L2 0 3313 3262 561 146 11 173 chr3 158764082 158764267 -68760311 + L1PB4 LINE L1 5990 6144 -12 1644 250 53 37 chr3 158764424 158765194 -68759384 - L1ME LINE L1 -4905 1175 423 1755 163 10 29 chr3 158765838 158766151 -68758427 + AluJb SINE Alu 1 307 -5 1018 248 183 7 chr3 158766330 158766788 -68757790 + MLT1E3 LTR MaLR 94 624 0 658 128 0 10 chr3 158766915 158767040 -68757538 - AluSp/q SINE Alu 0 313 197 409 20 0 0 chr3 158767040 158767091 -68757487 - AluY SINE Alu -206 95 45 673 121 0 0 chr3 158767091 158767190 -68757388 - AluS SINE Alu -214 99 1 1402 219 117 73 chr3 158767192 158767581 -68756997 + L1M4 LINE L1 3479 3850 -2296 2398 73 0 10 chr3 158767581 158767883 -68756695 + AluY SINE Alu 2 300 -11 1402 219 117 73 chr3 158767883 158768083 -68756495 + L1M4 LINE L1 3850 4040 -2106 2175 120 7 0 chr3 158768083 158768382 -68756196 + AluSx SINE Alu 1 301 -11 1266 190 44 161 chr3 158768389 158768978 -68755600 + MLT2B1 LTR ERVL 1 520 0 1402 219 117 73 chr3 158768978 158769073 -68755505 + L1M4 LINE L1 4045 4202 -1944 1615 185 7 30 chr3 158769725 158770022 -68754556 + AluJo SINE Alu 1 290 -22 1746 169 10 16 chr3 158770327 158770635 -68753943 - AluJb SINE Alu -6 306 1 23 33 0 0 chr3 158770685 158770715 -68753863 + AT_rich Low_complexity Low_complexity 1 30 0 2302 107 0 0 chr3 158770785 158771083 -68753495 + AluSg SINE Alu 1 298 -12 1042 185 63 66 chr3 158771147 158771466 -68753112 - L1MA9 LINE L1 -35 6277 5960 207 139 0 0 chr3 158771788 158771824 -68752754 + (GAAAA)n Simple_repeat Simple_repeat 2 37 0 688 207 44 39 chr3 158771930 158772133 -68752445 - L1MA9 LINE L1 -116 6196 5993 25 51 0 0 chr3 158772252 158772291 -68752287 + AT_rich Low_complexity Low_complexity 1 39 0 2552 48 0 0 chr3 158772681 158772970 -68751608 + AluY SINE Alu 3 291 -20 2093 138 14 0 chr3 158774034 158774331 -68750247 - AluJb SINE Alu -11 301 1 234 320 141 0 chr3 158774431 158774559 -68750019 - MIR SINE MIR -102 160 15 382 259 123 93 chr3 158776088 158776189 -68748389 + L1ME4a LINE L1 5787 5883 -238 2051 133 0 19 chr3 158776189 158776504 -68748074 + AluSx SINE Alu 1 309 -3 382 259 123 93 chr3 158776504 158776726 -68747852 + L1ME4a LINE L1 5883 6120 -1 189 0 0 0 chr3 158776726 158776747 -68747831 + (TA)n Simple_repeat Simple_repeat 1 21 0 2181 110 0 3 chr3 158777260 158777552 -68747026 - AluSg SINE Alu -19 291 1 1495 177 30 56 chr3 158778083 158778244 -68746334 + MLT1A1 LTR MaLR 1 165 -200 2096 110 4 0 chr3 158778244 158778525 -68746053 + AluSc SINE Alu 1 282 -27 748 100 0 0 chr3 158778425 158778525 -68746053 + AluSc SINE Alu 183 314 0 209 0 62 0 chr3 158778525 158778557 -68746021 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 1495 177 30 56 chr3 158778557 158778699 -68745879 + MLT1A1 LTR MaLR 163 297 -68 2148 117 7 3 chr3 158778699 158779006 -68745572 + AluSx SINE Alu 1 308 -4 1202 153 4 103 chr3 158779006 158779156 -68745422 + MLT1A1 LTR MaLR 148 268 -97 1785 160 4 4 chr3 158779156 158779466 -68745112 + AluSx SINE Alu 1 281 -31 1202 153 4 103 chr3 158779466 158779556 -68745022 + MLT1A1 LTR MaLR 268 365 0 1487 178 74 0 chr3 158779741 158780011 -68744567 - AluJb SINE Alu -20 292 3 359 300 84 35 chr3 158780299 158780521 -68744057 + MIR SINE MIR 19 246 -16 2141 135 3 0 chr3 158780627 158780924 -68743654 + AluSx SINE Alu 1 298 -14 329 194 157 28 chr3 158781234 158781342 -68743236 - MER58C DNA MER1_type -8 207 86 22 56 0 0 chr3 158781597 158781633 -68742945 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr3 158782068 158782090 -68742488 + AT_rich Low_complexity Low_complexity 1 22 0 506 86 123 0 chr3 158782344 158782425 -68742153 + L1MC1 LINE L1 6243 6333 0 11431 118 43 75 chr3 158782567 158782633 -68741945 - Tigger2 DNA MER2_type -2 2716 2649 234 0 0 0 chr3 158782633 158782659 -68741919 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 1681 171 29 21 chr3 158782660 158782941 -68741637 - AluJo SINE Alu -29 283 1 11431 118 43 75 chr3 158782941 158783190 -68741388 - Tigger2 DNA MER2_type -69 2649 2393 2210 99 10 10 chr3 158783190 158783502 -68741076 + AluSx SINE Alu 1 312 0 11431 118 43 75 chr3 158783502 158784428 -68740150 - Tigger2 DNA MER2_type -325 2393 1439 2104 119 0 36 chr3 158784428 158784730 -68739848 + AluSx SINE Alu 1 291 -21 11431 118 43 75 chr3 158784730 158785053 -68739525 - Tigger2 DNA MER2_type -1279 1439 1107 1611 153 114 0 chr3 158785053 158785315 -68739263 + AluJo SINE Alu 1 292 -20 11431 118 43 75 chr3 158785315 158785467 -68739111 - Tigger2 DNA MER2_type -1611 1107 952 2459 61 0 3 chr3 158785467 158785762 -68738816 + AluY SINE Alu 1 294 -17 11431 118 43 75 chr3 158785762 158786143 -68738435 - Tigger2 DNA MER2_type -1766 952 681 495 0 0 0 chr3 158786143 158786198 -68738380 + (TA)n Simple_repeat Simple_repeat 2 56 0 415 197 0 0 chr3 158786201 158786272 -68738306 - FAM SINE Alu -72 113 43 3830 131 56 15 chr3 158786287 158786944 -68737634 - Tigger2 DNA MER2_type -2028 690 7 454 340 0 0 chr3 158787088 158787238 -68737340 + L1ME4a LINE L1 5446 5595 -2213 339 25 0 0 chr3 158787240 158787280 -68737298 + (CA)n Simple_repeat Simple_repeat 1 40 0 1357 170 72 11 chr3 158787325 158787590 -68736988 + MER89 LTR ERV1 279 559 0 243 217 145 0 chr3 158787619 158787702 -68736876 + L1ME4a LINE L1 5694 5788 -2020 428 372 50 19 chr3 158788346 158788889 -68735689 + L2 LINE L2 2507 3083 -189 1223 123 4 70 chr3 158788896 158788959 -68735619 - L1MA7 LINE L1 0 6291 6225 1950 142 3 20 chr3 158788959 158789261 -68735317 - AluJb SINE Alu -15 297 1 1223 123 4 70 chr3 158789261 158789440 -68735138 - L1MA7 LINE L1 -66 6225 6065 1605 97 12 57 chr3 158789442 158789689 -68734889 - MER1B DNA MER1_type -64 275 40 792 139 37 64 chr3 158789707 158789894 -68734684 - L1MA6 LINE L1 -218 6082 5901 2536 67 0 0 chr3 158790259 158790556 -68734022 + AluY SINE Alu 1 297 -14 24 0 0 0 chr3 158790691 158790715 -68733863 + AT_rich Low_complexity Low_complexity 1 24 0 2070 148 0 3 chr3 158790770 158791074 -68733504 + AluSx SINE Alu 1 303 -9 1135 173 0 0 chr3 158791628 158791813 -68732765 + AluSg/x SINE Alu 119 303 -7 402 194 0 41 chr3 158791871 158791969 -68732609 - MER53 DNA DNA -1 188 95 1051 184 42 24 chr3 158792107 158792319 -68732259 + AluJb SINE Alu 86 301 -11 2339 113 0 0 chr3 158792320 158792631 -68731947 + AluSx SINE Alu 1 311 -1 1698 157 92 0 chr3 158792631 158792912 -68731666 + AluJb SINE Alu 1 307 -5 258 282 51 43 chr3 158793083 158793200 -68731378 + L1ME4a LINE L1 5978 6095 -26 1388 155 29 50 chr3 158793277 158793554 -68731024 + AluJb SINE Alu 42 312 0 302 182 159 0 chr3 158794352 158794440 -68730138 - MER5C DNA MER1_type -1 323 222 877 136 0 0 chr3 158794441 158794559 -68730019 + FLAM_C SINE Alu 1 118 -25 27 0 0 0 chr3 158794559 158794586 -68729992 + AT_rich Low_complexity Low_complexity 1 27 0 587 200 33 0 chr3 158794638 158794758 -68729820 - MER5C DNA MER1_type -200 124 1 26 74 0 0 chr3 158794780 158794834 -68729744 + AT_rich Low_complexity Low_complexity 1 54 0 283 288 56 52 chr3 158795090 158795354 -68729224 + L1MC4a LINE L1 5656 5787 -377 21 0 0 0 chr3 158795509 158795530 -68729048 + AT_rich Low_complexity Low_complexity 1 21 0 1141 175 41 30 chr3 158795810 158796208 -68728370 + L1MB4 LINE L1 5028 5420 -763 2345 114 0 0 chr3 158796208 158796516 -68728062 + AluSc SINE Alu 1 308 -1 1141 175 41 30 chr3 158796516 158796563 -68728015 + L1MB4 LINE L1 5420 5479 -704 459 0 0 0 chr3 158796563 158796614 -68727964 + (CA)n Simple_repeat Simple_repeat 2 52 0 841 171 11 0 chr3 158796683 158796858 -68727720 + GA-rich Low_complexity Low_complexity 2 178 0 3245 161 75 14 chr3 158796858 158797515 -68727063 + L1MB4 LINE L1 5484 6180 0 227 269 0 0 chr3 158798735 158798787 -68725791 + (CATA)n Simple_repeat Simple_repeat 2 53 0 2400 71 0 7 chr3 158799034 158799331 -68725247 - AluY SINE Alu -16 295 1 1871 159 7 10 chr3 158799733 158800035 -68724543 + AluJo SINE Alu 1 301 -11 475 228 0 8 chr3 158800038 158800161 -68724417 + L1MC5 LINE L1 7116 7237 -724 501 223 65 65 chr3 158800316 158800563 -68724015 + L1MC5 LINE L1 7298 7544 -417 2235 116 0 0 chr3 158800597 158800898 -68723680 + AluSg SINE Alu 1 301 -9 1237 112 0 0 chr3 158800898 158801059 -68723519 + AluSg/x SINE Alu 132 292 -18 2253 118 0 6 chr3 158801072 158801385 -68723193 + AluSp SINE Alu 1 311 -2 199 219 0 0 chr3 158801705 158801746 -68722832 + L2 LINE L2 3268 3308 -5 1886 161 3 10 chr3 158801784 158802095 -68722483 + AluSx SINE Alu 1 309 -3 252 0 0 0 chr3 158802230 158802258 -68722320 + (TATG)n Simple_repeat Simple_repeat 2 29 0 2334 99 0 0 chr3 158802261 158802545 -68722033 - AluSg SINE Alu -26 284 1 2296 97 0 3 chr3 158802939 158803239 -68721339 + AluSg SINE Alu 1 299 -11 262 176 0 78 chr3 158803293 158803344 -68721234 + AluJ/FLAM SINE Alu 13 59 -243 32 43 0 0 chr3 158803452 158803498 -68721080 + AT_rich Low_complexity Low_complexity 1 46 0 2308 100 0 0 chr3 158803912 158804211 -68720367 + AluSg SINE Alu 1 299 -11 1776 170 7 10 chr3 158804248 158804554 -68720024 + AluJo SINE Alu 1 305 -7 607 202 0 0 chr3 158804568 158804672 -68719906 + FLAM_C SINE Alu 5 108 -35 2016 112 46 11 chr3 158805126 158805411 -68719167 + AluSx SINE Alu 1 295 -17 1669 165 0 39 chr3 158805642 158805927 -68718651 + AluJb SINE Alu 1 274 -38 1132 125 22 22 chr3 158807101 158807285 -68717293 + AluSg/x SINE Alu 127 310 0 454 282 75 44 chr3 158807285 158807512 -68717066 - MER20B DNA MER1_type -549 234 1 4199 222 70 85 chr3 158807530 158809312 -68715266 - MER52A LTR ERV1 0 1755 1 257 349 108 8 chr3 158809924 158810053 -68714525 - MIR3 SINE MIR -25 183 42 1825 95 0 4 chr3 158810509 158810741 -68713837 + AluY SINE Alu 1 231 -80 1749 236 56 66 chr3 158811126 158811369 -68713209 + MER20B DNA MER1_type 1 245 -538 463 198 34 174 chr3 158811369 158811437 -68713141 + MER5B DNA MER1_type 1 77 -101 1820 159 7 11 chr3 158811437 158811720 -68712858 - AluSx SINE Alu -30 282 1 463 198 34 174 chr3 158811720 158811858 -68712720 + MER5B DNA MER1_type 77 178 0 1749 236 56 66 chr3 158811858 158812048 -68712530 + MER20B DNA MER1_type 245 435 -348 2282 98 0 3 chr3 158812048 158812344 -68712234 - AluSc SINE Alu -14 295 1 1749 236 56 66 chr3 158812344 158812679 -68711899 + MER20B DNA MER1_type 435 762 -21 362 276 0 39 chr3 158812679 158812860 -68711718 - L2 LINE L2 -365 2949 2776 403 224 61 79 chr3 158812920 158813085 -68711493 - MIR3 SINE MIR -14 194 33 743 156 0 41 chr3 158813285 158813407 -68711171 - FLAM_A SINE Alu -16 117 1 752 208 34 45 chr3 158813440 158813618 -68710960 - AluJo SINE Alu -13 299 124 2277 91 0 20 chr3 158813887 158814046 -68710532 - AluSp SINE Alu -21 292 140 2541 48 7 3 chr3 158814046 158814356 -68710222 - AluY SINE Alu 0 311 1 2277 91 0 20 chr3 158814356 158814494 -68710084 - AluSp SINE Alu -173 140 1 2202 113 3 16 chr3 158814759 158815101 -68709477 - AluSq SINE Alu 0 313 1 25 0 0 0 chr3 158815103 158815128 -68709450 + AT_rich Low_complexity Low_complexity 1 25 0 1151 207 98 15 chr3 158815129 158815395 -68709183 - AluJb SINE Alu -24 288 1 1323 173 38 4 chr3 158816271 158816508 -68708070 + AluJb SINE Alu 1 245 -67 3476 83 14 30 chr3 158816511 158817006 -68707572 + MER41A LTR ERV1 2 488 -66 2497 60 0 0 chr3 158817006 158817306 -68707272 - AluY SINE Alu -9 302 3 1863 59 0 21 chr3 158817310 158817546 -68707032 - AluY SINE Alu -4 307 77 1457 59 0 91 chr3 158817546 158817765 -68706813 - AluY SINE Alu -32 279 81 2158 109 0 0 chr3 158817765 158818048 -68706530 - AluSx SINE Alu -28 284 2 37 0 0 0 chr3 158818099 158818136 -68706442 + AT_rich Low_complexity Low_complexity 1 37 0 1819 164 7 10 chr3 158818181 158818485 -68706093 + AluJo SINE Alu 1 303 -9 1880 150 0 80 chr3 158818488 158818827 -68705751 + AluSx SINE Alu 1 312 0 30 27 0 0 chr3 158819052 158819089 -68705489 + AT_rich Low_complexity Low_complexity 1 37 0 366 345 31 11 chr3 158819115 158819306 -68705272 - L2 LINE L2 -221 3051 2857 459 260 51 110 chr3 158819316 158819580 -68704998 + MLT1I LTR MaLR 1 230 -179 1882 103 4 0 chr3 158819580 158819823 -68704755 + AluSx SINE Alu 3 246 -66 459 260 51 110 chr3 158819823 158819993 -68704585 + MLT1I LTR MaLR 230 409 0 2424 86 0 6 chr3 158820046 158820359 -68704219 - AluSq SINE Alu -2 311 1 1812 152 3 20 chr3 158820362 158820524 -68704054 - AluJo SINE Alu -20 292 136 2476 91 0 0 chr3 158820524 158820831 -68703747 - AluY SINE Alu -2 309 3 1812 152 3 20 chr3 158820831 158820965 -68703613 - AluJo SINE Alu -176 136 1 1428 179 17 8 chr3 158821147 158821387 -68703191 + AluJo SINE Alu 62 303 -9 641 244 154 49 chr3 158821759 158822129 -68702449 - MLT1J2 LTR MaLR -3 508 44 22 35 0 0 chr3 158822571 158822600 -68701978 + AT_rich Low_complexity Low_complexity 1 29 0 778 225 0 12 chr3 158822736 158822896 -68701682 - AluJb SINE Alu -23 289 132 2332 84 3 10 chr3 158822910 158823221 -68701357 + AluSx SINE Alu 1 309 -3 1837 164 3 13 chr3 158823228 158823540 -68701038 + AluJb SINE Alu 1 309 -3 248 104 104 0 chr3 158823703 158823751 -68700827 - Alu SINE Alu 0 302 250 2293 111 0 0 chr3 158823752 158824050 -68700528 - AluSg SINE Alu -12 298 1 2250 101 3 0 chr3 158824097 158824385 -68700193 - AluSg SINE Alu -21 289 1 281 250 120 0 chr3 158824613 158824675 -68699903 - L1MC4a LINE L1 -1909 5899 5821 2251 106 3 3 chr3 158824675 158824976 -68699602 - AluSg SINE Alu -9 301 1 281 250 120 0 chr3 158824976 158825005 -68699573 - L1MC4a LINE L1 -1987 5821 5797 186 167 0 0 chr3 158825065 158825101 -68699477 + (TATG)n Simple_repeat Simple_repeat 4 39 0 21 0 0 0 chr3 158825205 158825226 -68699352 + AT_rich Low_complexity Low_complexity 1 21 0 806 174 0 0 chr3 158825226 158825347 -68699231 - FLAM_C SINE Alu -20 123 3 1828 148 3 27 chr3 158825471 158825769 -68698809 + AluSx SINE Alu 22 312 0 557 180 195 16 chr3 158825769 158825897 -68698681 + AluJb SINE Alu 132 282 -30 468 252 0 28 chr3 158825960 158826067 -68698511 + FLAM_A SINE Alu 2 105 -37 327 213 0 25 chr3 158826657 158826737 -68697841 + MIR SINE MIR 64 141 -67 2261 83 20 13 chr3 158826748 158827048 -68697530 + AluY SINE Alu 5 306 -5 903 197 26 0 chr3 158827051 158827203 -68697375 + AluJb SINE Alu 137 292 -20 2328 91 7 3 chr3 158827207 158827514 -68697064 + AluSg SINE Alu 1 308 -2 281 236 69 0 chr3 158827515 158827587 -68696991 - L2 LINE L2 -16 3297 3221 1774 149 17 10 chr3 158827624 158827912 -68696666 - AluSx SINE Alu -22 290 1 845 188 79 0 chr3 158827922 158828087 -68696491 - FRAM SINE Alu -3 173 1 23 0 0 0 chr3 158828093 158828116 -68696462 + AT_rich Low_complexity Low_complexity 1 23 0 1077 111 0 0 chr3 158828125 158828260 -68696318 + AluSq/x SINE Alu 1 135 -178 1933 139 0 29 chr3 158828260 158828576 -68696002 + AluSx SINE Alu 1 307 -5 800 120 0 0 chr3 158828643 158828751 -68695827 - AluSg/x SINE Alu -13 299 192 325 275 0 74 chr3 158828873 158828912 -68695666 + L2 LINE L2 2618 2658 -656 1934 112 0 15 chr3 158828912 158829180 -68695398 - AluSg SINE Alu -11 299 36 325 275 0 74 chr3 158829180 158829289 -68695289 + L2 LINE L2 2658 2755 -559 1899 154 0 19 chr3 158829397 158829715 -68694863 - AluJb SINE Alu 0 312 1 2136 122 0 3 chr3 158829736 158830024 -68694554 - AluSx SINE Alu -25 287 1 1377 199 13 35 chr3 158830547 158830687 -68693891 + AluJo SINE Alu 1 143 -169 2220 82 20 10 chr3 158830687 158830993 -68693585 + AluSc SINE Alu 1 309 0 1377 199 13 35 chr3 158830993 158831169 -68693409 + AluJo SINE Alu 143 310 -2 323 309 10 0 chr3 158831169 158831190 -68693388 + GA-rich Low_complexity Low_complexity 2 21 -78 2019 121 13 19 chr3 158831190 158831504 -68693074 + AluSx SINE Alu 1 312 0 323 309 10 0 chr3 158831504 158831579 -68692999 + GA-rich Low_complexity Low_complexity 21 99 0 441 256 99 52 chr3 158831587 158831759 -68692819 - Charlie1b DNA MER1_type -339 184 5 214 304 51 0 chr3 158831900 158831979 -68692599 + L2 LINE L2 3188 3270 -2 658 140 168 0 chr3 158833141 158833248 -68691330 + FLAM_C SINE Alu 2 126 -17 1564 170 23 10 chr3 158833330 158833630 -68690948 + AluJo SINE Alu 1 304 -8 2386 64 0 3 chr3 158833841 158834139 -68690439 + AluY SINE Alu 1 297 -14 1050 121 0 0 chr3 158834151 158834308 -68690270 + AluSx SINE Alu 1 157 -155 282 277 62 62 chr3 158834457 158834587 -68689991 + L2 LINE L2 3121 3250 -22 1403 167 22 26 chr3 158835830 158836272 -68688306 + AluSx SINE Alu 3 443 0 764 158 153 11 chr3 158836283 158836466 -68688112 + AluSx SINE Alu 9 217 -95 445 273 17 6 chr3 158836467 158836639 -68687939 + AluSp SINE Alu 78 251 -52 1852 167 13 0 chr3 158836778 158837084 -68687494 - AluSx SINE Alu -2 310 1 311 346 15 10 chr3 158837093 158837295 -68687283 - L1ME LINE L1 -297 5824 5622 772 135 10 90 chr3 158837296 158837496 -68687082 + AluSc SINE Alu 2 185 -124 1342 138 13 17 chr3 158838258 158838489 -68686089 - AluSx SINE Alu -82 230 1 1760 138 39 0 chr3 158839566 158839849 -68684729 - AluJb SINE Alu -17 295 2 756 235 33 114 chr3 158839940 158840375 -68684203 + L2 LINE L2 2755 3156 -157 343 196 0 0 chr3 158840399 158840455 -68684123 - MER2 DNA MER2_type -10 335 280 1119 141 0 0 chr3 158840464 158840634 -68683944 + AluSg/x SINE Alu 135 304 -6 710 84 19 9 chr3 158840656 158840763 -68683815 - MER2 DNA MER2_type -84 261 154 962 161 6 0 chr3 158840797 158840959 -68683619 - AluJb SINE Alu -18 294 132 863 228 0 0 chr3 158841215 158841377 -68683201 - AluJo SINE Alu -33 279 118 252 211 0 0 chr3 158841495 158841547 -68683031 - L2 LINE L2 -8 3264 3213 546 325 77 62 chr3 158841652 158841737 -68682841 - L2 LINE L2 -229 3043 2961 1956 141 0 0 chr3 158841737 158842034 -68682544 + AluSx SINE Alu 2 298 -14 546 325 77 62 chr3 158842034 158842148 -68682430 - L2 LINE L2 -311 2961 2850 802 168 0 0 chr3 158842148 158842273 -68682305 + FLAM_C SINE Alu 1 125 -8 546 325 77 62 chr3 158842273 158842360 -68682218 - L2 LINE L2 -422 2850 2766 1954 121 0 3 chr3 158842360 158842673 -68681905 - AluSq SINE Alu 0 313 2 546 325 77 62 chr3 158842673 158842820 -68681758 - L2 LINE L2 -506 2766 2593 217 234 0 21 chr3 158842821 158842868 -68681710 - L2 LINE L2 -2035 1279 1234 499 287 33 7 chr3 158843011 158843161 -68681417 - L2 LINE L2 -2 3311 3158 776 210 14 0 chr3 158843161 158843304 -68681274 + MER2 DNA MER2_type 2 146 -199 610 161 192 23 chr3 158843312 158843442 -68681136 + FRAM SINE Alu 4 155 -21 2294 82 0 7 chr3 158843449 158843755 -68680823 + AluSx SINE Alu 1 304 -8 1965 125 7 13 chr3 158843755 158844058 -68680520 + AluSx SINE Alu 1 301 -11 310 333 29 34 chr3 158844199 158844403 -68680175 + L2 LINE L2 1812 2014 -1300 2311 85 0 7 chr3 158844512 158844818 -68679760 + AluSx SINE Alu 2 305 -7 297 196 18 0 chr3 158845198 158845254 -68679324 - MER45A DNA AcHobo 0 178 122 811 186 21 0 chr3 158845719 158845859 -68678719 - MER45A DNA AcHobo -35 143 1 332 229 62 21 chr3 158845870 158845966 -68678612 - L1M4 LINE L1 -891 5255 5156 520 77 8 179 chr3 158846080 158846197 -68678381 + L1MC1 LINE L1 6209 6305 -28 849 212 26 16 chr3 158846198 158846387 -68678191 + AluSg/x SINE Alu 114 304 -6 344 256 67 148 chr3 158846461 158846565 -68678013 + L1MC4a LINE L1 5872 5983 -1825 1874 143 10 3 chr3 158846565 158846873 -68677705 - AluSg SINE Alu 0 310 1 344 256 67 148 chr3 158846873 158847159 -68677419 + L1MC4a LINE L1 5983 6230 -1578 1406 163 24 31 chr3 158847357 158847645 -68676933 + AluSx SINE Alu 1 286 -26 272 158 18 0 chr3 158847645 158847702 -68676876 + (TA)n Simple_repeat Simple_repeat 1 58 0 2420 47 0 3 chr3 158847994 158848294 -68676284 + AluY SINE Alu 1 299 -12 558 131 40 0 chr3 158848317 158848416 -68676162 + AluSg/x SINE Alu 204 306 -3 184 336 19 29 chr3 158848672 158848776 -68675802 + L3 LINE CR1 1473 1575 -2 184 315 37 0 chr3 158848802 158848856 -68675722 + L2 LINE L2 3178 3233 -80 1937 126 0 7 chr3 158849063 158849357 -68675221 + AluSc SINE Alu 1 292 -17 1418 171 23 39 chr3 158849599 158849731 -68674847 + AluJo SINE Alu 1 134 -178 2338 80 0 0 chr3 158849731 158850030 -68674548 + AluSq SINE Alu 3 301 -12 1418 171 23 39 chr3 158850030 158850207 -68674371 + AluJo SINE Alu 134 305 -7 2069 129 0 3 chr3 158850263 158850573 -68674005 - AluSg SINE Alu -1 309 1 199 0 0 61 chr3 158850575 158850608 -68673970 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 2014 70 56 0 chr3 158850610 158850880 -68673698 - AluY SINE Alu -26 285 1 1871 143 3 34 chr3 158850883 158851247 -68673331 - AluSx SINE Alu 0 354 1 1608 151 0 73 chr3 158851249 158851566 -68673012 - AluJo SINE Alu -18 294 1 393 206 87 31 chr3 158851616 158851767 -68672811 + MLT1H LTR MaLR 369 523 -26 2079 77 7 0 chr3 158851801 158852075 -68672503 + AluSx SINE Alu 27 302 -10 1681 154 0 57 chr3 158852265 158852410 -68672168 + AluJo SINE Alu 2 121 -181 1569 119 61 71 chr3 158852410 158852551 -68672027 + AluSx SINE Alu 5 146 -166 2203 102 0 3 chr3 158852551 158852855 -68671723 + AluSp SINE Alu 1 303 -10 1569 119 61 71 chr3 158852855 158853007 -68671571 + AluSx SINE Alu 146 295 -17 1681 154 0 57 chr3 158853007 158853179 -68671399 + AluJo SINE Alu 121 301 -1 383 234 11 11 chr3 158854756 158854850 -68669728 + AluJb SINE Alu 120 213 -89 431 279 29 82 chr3 158854963 158855171 -68669407 - L2 LINE L2 -1 3271 3075 898 185 6 0 chr3 158855536 158855709 -68668869 - FRAM SINE Alu -3 173 1 1422 148 3 142 chr3 158856200 158856538 -68668040 + AluJo SINE Alu 1 291 -11 1961 130 3 7 chr3 158857020 158857320 -68667258 - AluSq SINE Alu -14 299 1 1584 189 24 0 chr3 158857556 158857852 -68666726 - AluJb SINE Alu -9 303 1 1842 152 3 7 chr3 158858031 158858334 -68666244 - AluJb SINE Alu -8 304 3 2333 82 0 0 chr3 158858456 158858761 -68665817 - AluSp SINE Alu -8 305 1 186 279 165 0 chr3 158858921 158859000 -68665578 + L2 LINE L2 3184 3275 -38 231 326 30 52 chr3 158859032 158859167 -68665411 + L2 LINE L2 2461 2592 -722 2321 85 0 0 chr3 158859181 158859487 -68665091 - AluSg SINE Alu -3 307 2 357 93 0 0 chr3 158859584 158859638 -68664940 + (GA)n Simple_repeat Simple_repeat 1 54 0 189 0 0 0 chr3 158859772 158859793 -68664785 + (T)n Simple_repeat Simple_repeat 1 21 0 759 221 13 13 chr3 158859841 158859990 -68664588 + FRAM SINE Alu 2 150 -26 381 22 0 0 chr3 158859991 158860037 -68664541 + (TAAA)n Simple_repeat Simple_repeat 4 49 0 597 285 89 74 chr3 158860156 158860560 -68664018 - MLT1K LTR MaLR -118 470 61 1833 127 7 34 chr3 158860614 158860929 -68663649 - AluSx SINE Alu 0 307 1 1747 151 7 17 chr3 158860959 158861257 -68663321 - AluJb SINE Alu -7 305 11 1050 128 55 0 chr3 158861274 158861438 -68663140 - AluJb SINE Alu -3 309 137 461 263 23 80 chr3 158861438 158861613 -68662965 + L2 LINE L2 2906 3070 -202 1430 208 27 0 chr3 158861674 158861967 -68662611 + AluJb SINE Alu 1 301 -11 1679 157 0 55 chr3 158861972 158862260 -68662318 + AluJo SINE Alu 1 271 -41 209 32 0 32 chr3 158862260 158862291 -68662287 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1679 157 0 55 chr3 158862291 158862327 -68662251 + AluJo SINE Alu 271 307 -5 316 199 64 140 chr3 158862328 158862499 -68662079 - MER112 DNA MER1_type -97 163 6 195 100 0 0 chr3 158862814 158862844 -68661734 + (T)n Simple_repeat Simple_repeat 1 30 0 1916 136 10 3 chr3 158863166 158863461 -68661117 + AluSx SINE Alu 1 297 -15 1667 145 0 21 chr3 158863545 158863828 -68660750 - AluSq SINE Alu -32 281 5 183 391 113 0 chr3 158863856 158863971 -68660607 - L2 LINE L2 0 3272 3145 2111 108 3 0 chr3 158864019 158864316 -68660262 + AluSx SINE Alu 1 298 -14 1086 140 5 16 chr3 158864320 158864538 -68660040 + AluSq SINE Alu 125 313 0 2150 91 0 20 chr3 158864803 158864941 -68659637 + AluSp SINE Alu 1 140 -173 2412 48 7 3 chr3 158864941 158865251 -68659327 + AluY SINE Alu 1 311 0 2150 91 0 20 chr3 158865251 158865410 -68659168 + AluSp SINE Alu 140 292 -21 760 205 37 25 chr3 158865696 158865857 -68658721 + FRAM SINE Alu 1 163 -3 750 156 0 41 chr3 158865890 158866012 -68658566 + FLAM_A SINE Alu 1 117 -16 463 224 61 79 chr3 158866212 158866377 -68658201 + MIR3 SINE MIR 33 194 -14 417 308 15 46 chr3 158866355 158866618 -68657960 + L2 LINE L2 2695 2949 -365 * 1763 237 56 64 chr3 158866618 158866951 -68657627 - MER20B DNA MER1_type -21 762 428 2086 102 3 3 chr3 158866951 158867246 -68657332 + AluSc SINE Alu 1 295 -14 1763 237 56 64 chr3 158867246 158867436 -68657142 - MER20B DNA MER1_type -355 428 238 454 198 34 174 chr3 158867436 158867574 -68657004 - MER5B DNA MER1_type 0 178 77 1703 159 7 11 chr3 158867574 158867857 -68656721 + AluSx SINE Alu 1 282 -30 454 198 34 174 chr3 158867857 158867925 -68656653 - MER5B DNA MER1_type -101 77 1 1763 237 56 64 chr3 158867925 158868168 -68656410 - MER20B DNA MER1_type -545 238 1 333 305 51 51 chr3 158868286 158868366 -68656212 - L1ME4a LINE L1 -208 5913 5834 1953 161 0 0 chr3 158868366 158868677 -68655901 - AluSx SINE Alu -1 311 1 333 305 51 51 chr3 158868677 158868888 -68655690 - L1ME4a LINE L1 -286 5835 5622 2366 78 3 0 chr3 158868888 158869195 -68655383 + AluSc SINE Alu 1 308 -1 521 153 82 0 chr3 158869207 158869305 -68655273 + AluSp SINE Alu 2 107 -206 2017 137 0 0 chr3 158869388 158869694 -68654884 + AluSx SINE Alu 3 308 -4 1495 186 49 0 chr3 158869753 158870038 -68654540 + AluJb SINE Alu 1 299 -13 1774 122 35 48 chr3 158870135 158870446 -68654132 + AluSg SINE Alu 1 307 -3 1610 90 64 4 chr3 158870457 158870691 -68653887 + AluSx SINE Alu 1 248 -64 373 123 6 61 chr3 158870692 158870855 -68653723 + (TA)n Simple_repeat Simple_repeat 2 155 0 405 59 0 0 chr3 158870856 158870907 -68653671 - AluSg/x SINE Alu -64 246 196 661 157 9 0 chr3 158871043 158871158 -68653420 + FLAM_A SINE Alu 20 135 -7 2198 90 0 0 chr3 158871306 158871605 -68652973 + AluSc SINE Alu 1 299 -10 445 103 0 15 chr3 158872397 158872465 -68652113 + AluS SINE Alu 2 68 -245 831 118 0 8 chr3 158872469 158872596 -68651982 + AluSp/q SINE Alu 177 302 -11 1525 150 27 60 chr3 158872650 158872950 -68651628 + AluJb SINE Alu 1 290 -22 198 0 0 0 chr3 158874383 158874405 -68650173 + (T)n Simple_repeat Simple_repeat 1 22 0 2120 85 4 4 chr3 158874670 158874951 -68649627 + AluSq SINE Alu 1 281 -32 216 0 0 0 chr3 158874951 158874975 -68649603 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 1293 194 0 83 chr3 158875256 158875581 -68648997 + AluJo SINE Alu 1 298 -4 2204 73 3 32 chr3 158875581 158875897 -68648681 + AluY SINE Alu 1 307 -4 2347 52 3 0 chr3 158876105 158876393 -68648185 - AluY SINE Alu -22 289 1 444 229 59 34 chr3 158876404 158876522 -68648056 - L2 LINE L2 -37 3276 3156 795 201 38 0 chr3 158876526 158876685 -68647893 + FAM SINE Alu 1 165 -10 2144 92 3 43 chr3 158876685 158877010 -68647568 - AluSq SINE Alu -1 312 1 27 0 0 0 chr3 158877010 158877037 -68647541 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr3 158877066 158877088 -68647490 + AT_rich Low_complexity Low_complexity 1 22 0 492 157 20 39 chr3 158877088 158877190 -68647388 + FLAM_A SINE Alu 43 142 0 406 273 273 43 chr3 158877209 158877487 -68647091 - L2 LINE L2 -527 2787 2446 1293 83 0 0 chr3 158877546 158877714 -68646864 + AluSq SINE Alu 134 301 -12 200 262 143 124 chr3 158877717 158878087 -68646491 - L2 LINE L2 -920 2394 2018 2021 99 0 7 chr3 158878178 158878486 -68646092 + AluSx SINE Alu 3 308 0 2131 57 14 14 chr3 158878530 158878863 -68645715 + AluY SINE Alu 1 333 0 1638 88 112 19 chr3 158878910 158879215 -68645363 + AluY SINE Alu 1 329 0 2083 81 29 19 chr3 158879221 158879529 -68645049 + AluSq SINE Alu 2 312 -1 23 0 0 0 chr3 158879529 158879552 -68645026 + AT_rich Low_complexity Low_complexity 1 23 0 1963 116 20 0 chr3 158879554 158879848 -68644730 + AluSc SINE Alu 1 300 -9 1870 130 3 39 chr3 158880319 158880455 -68644123 + AluSx SINE Alu 1 140 -172 2229 84 10 13 chr3 158880455 158880763 -68643815 + AluSp SINE Alu 1 307 -6 1870 130 3 39 chr3 158880763 158880934 -68643644 + AluSx SINE Alu 140 297 -15 674 69 0 0 chr3 158881086 158881173 -68643405 - AluSg/x SINE Alu -6 304 218 2610 49 0 3 chr3 158881088 158881392 -68643186 - AluY SINE Alu -8 303 1 995 193 100 129 chr3 158882044 158882355 -68642223 + AluJo SINE Alu 1 302 0 1200 188 0 28 chr3 158882384 158882597 -68641981 + AluJo SINE Alu 1 207 -105 2301 108 3 0 chr3 158882667 158882962 -68641616 + AluSx SINE Alu 1 296 -16 1831 138 3 66 chr3 158883346 158883498 -68641080 + AluJb SINE Alu 1 124 -188 2506 60 33 0 chr3 158883498 158883798 -68640780 + AluY SINE Alu 1 310 -1 1831 138 3 66 chr3 158883798 158883965 -68640613 + AluJb SINE Alu 124 300 -12 243 139 23 0 chr3 158884175 158884218 -68640360 - MLT1K LTR MaLR -20 568 525 1903 80 117 11 chr3 158884760 158885034 -68639544 - AluSg1 SINE Alu -6 303 1 310 301 171 0 chr3 158885185 158885331 -68639247 + MIR SINE MIR 80 250 -12 601 306 54 5 chr3 158885628 158885814 -68638764 + L3 LINE CR1 351 545 -1032 295 219 21 52 chr3 158885951 158886047 -68638531 - L2 LINE L2 0 3313 3221 899 158 0 0 chr3 158886064 158886197 -68638381 + FLAM_C SINE Alu 1 133 0 23 0 0 0 chr3 158886217 158886240 -68638338 + AT_rich Low_complexity Low_complexity 1 23 0 1772 169 7 10 chr3 158886247 158886542 -68638036 + AluJb SINE Alu 1 294 -18 317 273 71 10 chr3 158886546 158886645 -68637933 + L1M4 LINE L1 4500 4604 -1542 1291 155 5 19 chr3 158886720 158886926 -68637652 - AluJo SINE Alu -61 251 49 1991 116 0 34 chr3 158886944 158887278 -68637300 + AluSx SINE Alu 1 324 0 253 320 0 0 chr3 158887313 158887416 -68637162 + L1M4 LINE L1 4888 4990 -1156 3767 92 53 22 chr3 158887437 158888021 -68636557 - LTR10E LTR ERV1 -31 602 1 2239 109 3 13 chr3 158888084 158888388 -68636190 - AluSp SINE Alu -12 301 1 2054 126 16 7 chr3 158888499 158888939 -68635639 + AluSx SINE Alu 1 443 0 1810 92 77 18 chr3 158888950 158889058 -68635520 + AluSq SINE Alu 9 109 -204 2344 102 3 0 chr3 158889058 158889361 -68635217 + AluSp SINE Alu 1 304 -9 1810 92 77 18 chr3 158889361 158889524 -68635054 + AluSq SINE Alu 109 296 -17 2214 98 7 7 chr3 158889643 158889966 -68634612 - AluSc SINE Alu 0 309 1 2092 127 7 0 chr3 158890143 158890434 -68634144 + AluSx SINE Alu 1 293 -19 2114 143 7 0 chr3 158891090 158891397 -68633181 + AluJb SINE Alu 1 309 -3 524 273 0 0 chr3 158891407 158891535 -68633043 + L1MD2 LINE L1 5693 5820 -1988 1644 204 3 10 chr3 158891553 158891847 -68632731 + AluJb SINE Alu 5 296 -16 1357 155 3 152 chr3 158892287 158892635 -68631943 + AluJb SINE Alu 1 296 -6 261 83 0 0 chr3 158892654 158892690 -68631888 + (TC)n Simple_repeat Simple_repeat 2 37 0 218 224 56 16 chr3 158892690 158892815 -68631763 + (TA)n Simple_repeat Simple_repeat 2 131 0 271 278 13 60 chr3 158892827 158892942 -68631636 + L1M4 LINE L1 5052 5160 -986 2123 95 42 14 chr3 158892942 158893225 -68631353 + AluSx SINE Alu 1 291 -21 271 278 13 60 chr3 158893225 158893260 -68631318 + L1M4 LINE L1 5160 5195 -951 2557 77 0 0 chr3 158893262 158893575 -68631003 + AluSq SINE Alu 1 313 0 677 204 85 25 chr3 158893575 158893948 -68630630 + L1MC4a LINE L1 6453 6802 -1006 240 86 0 0 chr3 158893948 158893983 -68630595 + (CA)n Simple_repeat Simple_repeat 2 36 0 677 204 85 25 chr3 158893983 158894575 -68630003 + L1MC4a LINE L1 6802 7357 -451 2398 63 0 7 chr3 158894575 158894881 -68629697 + AluY SINE Alu 1 304 0 2127 112 6 53 chr3 158894884 158895205 -68629373 + AluSg SINE Alu 1 306 -4 677 204 85 25 chr3 158895205 158895363 -68629215 + L1MC4a LINE L1 7358 7713 -95 2260 96 7 0 chr3 158895371 158895662 -68628916 - AluSg SINE Alu -17 293 1 1848 196 77 32 chr3 158895681 158895745 -68628833 + L1MD2 LINE L1 5827 5887 -472 1748 187 3 10 chr3 158895745 158896044 -68628534 + AluJo SINE Alu 1 297 -15 1848 196 77 32 chr3 158896044 158896178 -68628400 + L1MD2 LINE L1 5887 6014 -345 2259 95 7 14 chr3 158896178 158896473 -68628105 - AluSg SINE Alu -17 293 1 2230 115 0 3 chr3 158896473 158896767 -68627811 - AluSx SINE Alu -18 294 1 1848 196 77 32 chr3 158896767 158897061 -68627517 + L1MD2 LINE L1 6013 6343 -16 2398 59 49 0 chr3 158897369 158897655 -68626923 - AluY SINE Alu -11 300 1 197 302 0 0 chr3 158897656 158897699 -68626879 - MIR SINE MIR -17 245 203 373 286 185 11 chr3 158897932 158898110 -68626468 - MIR SINE MIR -20 242 34 2039 140 7 0 chr3 158898138 158898431 -68626147 + AluSx SINE Alu 5 299 -13 188 250 19 19 chr3 158898446 158898498 -68626080 + L2 LINE L2 74 125 -3189 1902 143 0 40 chr3 158898670 158898794 -68625784 + AluJb SINE Alu 13 140 -172 2616 54 0 16 chr3 158898794 158899101 -68625477 + AluY SINE Alu 1 304 -7 240 35 0 0 chr3 158899101 158899130 -68625448 + (TA)n Simple_repeat Simple_repeat 2 30 0 1902 143 0 40 chr3 158899138 158899314 -68625264 + AluJb SINE Alu 140 301 -11 232 283 91 11 chr3 158899397 158899584 -68624994 + L1MC/D LINE L1 5722 5923 -1885 835 177 0 0 chr3 158899662 158899792 -68624786 - MER2 DNA MER2_type -212 133 4 1607 172 86 10 chr3 158899958 158900248 -68624330 + AluJb SINE Alu 1 312 0 2434 76 0 28 chr3 158900250 158900567 -68624011 + AluSg1 SINE Alu 1 308 -1 2024 72 69 32 chr3 158900568 158900914 -68623664 + MER4-int LTR ERV1 6033 6391 -207 329 194 65 11 chr3 158901053 158901146 -68623432 + L1M4 LINE L1 3693 3790 -2356 1437 225 17 3 chr3 158901146 158901448 -68623130 - MER68 LTR ERV1 0 562 257 23 0 0 0 chr3 158901448 158901471 -68623107 + AT_rich Low_complexity Low_complexity 1 23 0 1438 162 4 29 chr3 158901474 158901715 -68622863 - AluJb SINE Alu -77 235 1 1446 163 55 0 chr3 158901715 158901972 -68622606 - MER68 LTR ERV1 -291 271 1 1502 222 69 19 chr3 158901976 158902399 -68622179 + L1M4 LINE L1 3790 4233 -1913 248 240 65 58 chr3 158902572 158902726 -68621852 + LTR40c LTR ERVL 142 296 -169 2407 92 3 3 chr3 158903294 158903599 -68620979 + AluSq SINE Alu 1 305 -8 2446 81 0 16 chr3 158903703 158904013 -68620565 + AluY SINE Alu 1 305 -6 1273 115 0 6 chr3 158904014 158904188 -68620390 + AluSg/x SINE Alu 125 297 -15 884 139 42 0 chr3 158904188 158904332 -68620246 + MSTB LTR MaLR 241 390 -36 298 173 0 0 chr3 158904345 158904397 -68620181 - Alu SINE Alu -12 290 239 1957 165 10 0 chr3 158904565 158904874 -68619704 + AluJb SINE Alu 1 312 0 2244 133 3 0 chr3 158904879 158905188 -68619390 + AluSx SINE Alu 1 310 -2 1209 292 59 14 chr3 158905198 158905759 -68618819 - L1MC4a LINE L1 -1937 5871 5286 995 83 0 62 chr3 158905792 158905936 -68618642 + AluSq/x SINE Alu 1 135 -178 1889 135 0 30 chr3 158905936 158906252 -68618326 + AluSx SINE Alu 1 312 0 2131 121 0 7 chr3 158906319 158906616 -68617962 - AluSg SINE Alu -13 297 3 1879 59 0 21 chr3 158906620 158906856 -68617722 - AluY SINE Alu -4 307 77 1426 59 0 96 chr3 158906856 158907076 -68617502 - AluY SINE Alu -32 279 81 2169 109 0 0 chr3 158907076 158907359 -68617219 - AluSx SINE Alu -28 284 2 37 0 0 0 chr3 158907410 158907447 -68617131 + AT_rich Low_complexity Low_complexity 1 37 0 1852 164 7 10 chr3 158907492 158907796 -68616782 + AluJo SINE Alu 1 303 -9 1921 150 0 80 chr3 158907799 158908138 -68616440 + AluSx SINE Alu 1 312 0 204 305 110 0 chr3 158908145 158908227 -68616351 - L2 LINE L2 -48 3224 3134 30 27 0 0 chr3 158908363 158908400 -68616178 + AT_rich Low_complexity Low_complexity 1 37 0 426 345 31 11 chr3 158908426 158908617 -68615961 - L2 LINE L2 -221 3051 2857 487 254 58 115 chr3 158908627 158908890 -68615688 + MLT1I LTR MaLR 1 231 -178 1893 103 4 0 chr3 158908890 158909133 -68615445 + AluSx SINE Alu 3 246 -66 487 254 58 115 chr3 158909133 158909303 -68615275 + MLT1I LTR MaLR 231 409 0 2409 102 0 0 chr3 158909356 158909669 -68614909 - AluSq SINE Alu 0 313 1 1770 168 3 20 chr3 158909672 158909834 -68614744 - AluJo SINE Alu -20 292 136 2499 91 0 0 chr3 158909834 158910141 -68614437 - AluY SINE Alu -2 309 3 1770 168 3 20 chr3 158910141 158910275 -68614303 - AluJo SINE Alu -176 136 1 236 158 298 0 chr3 158910387 158910444 -68614134 - FRAM/FAM SINE Alu -85 81 8 2135 127 3 3 chr3 158910573 158910872 -68613706 - AluSx SINE Alu -13 299 1 502 238 155 30 chr3 158910873 158911041 -68613537 - MIR SINE MIR -17 245 57 303 171 9 48 chr3 158911153 158911258 -68613320 + (TA)n Simple_repeat Simple_repeat 2 102 0 1720 90 64 4 chr3 158911259 158911493 -68613085 - AluSx SINE Alu -64 248 1 1919 122 35 48 chr3 158911504 158911815 -68612763 - AluSg SINE Alu -3 307 1 1636 186 49 0 chr3 158911912 158912197 -68612381 - AluJb SINE Alu -13 299 1 2172 137 0 0 chr3 158912256 158912562 -68612016 - AluSx SINE Alu -4 308 3 995 206 0 49 chr3 158912667 158912755 -68611823 - AluJo SINE Alu -100 212 121 2502 79 3 0 chr3 158912755 158913060 -68611518 - AluSc SINE Alu -1 308 3 995 206 0 49 chr3 158913060 158913194 -68611384 - AluJo SINE Alu -191 121 1 236 158 298 0 chr3 158913306 158913363 -68611215 - FRAM/FAM SINE Alu -85 81 8 2135 127 3 3 chr3 158913492 158913791 -68610787 - AluSx SINE Alu -13 299 1 533 259 143 26 chr3 158913792 158913981 -68610597 - MIR SINE MIR -17 245 35 192 40 0 0 chr3 158913994 158914019 -68610559 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 507 213 0 0 chr3 158914021 158914115 -68610463 - AluSp/q SINE Alu -30 283 190 611 137 63 0 chr3 158914119 158914214 -68610364 + AluSq/x SINE Alu 6 106 -207 2076 103 3 3 chr3 158914324 158914615 -68609963 - AluSq SINE Alu -22 291 1 346 248 238 0 chr3 158915387 158915492 -68609086 - MIR SINE MIR -80 182 53 213 39 0 0 chr3 158916254 158916280 -68608298 + (CGG)n Simple_repeat Simple_repeat 3 28 0 2194 85 33 7 chr3 158917056 158917361 -68607217 - AluSp SINE Alu 0 313 1 1210 179 54 78 chr3 158917428 158917724 -68606854 + AluJb SINE Alu 23 311 -1 1092 128 13 0 chr3 158917764 158917920 -68606658 - AluSg/x SINE Alu -21 289 132 2031 101 4 7 chr3 158917920 158918198 -68606380 - AluSc SINE Alu -12 297 21 2142 123 0 3 chr3 158918335 158918642 -68605936 + AluSx SINE Alu 1 306 0 2092 114 17 0 chr3 158918653 158918942 -68605636 + AluSx SINE Alu 1 294 -18 194 0 0 37 chr3 158918946 158918973 -68605605 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 422 162 15 0 chr3 158919018 158919086 -68605492 + AluJ/FLAM SINE Alu 2 70 -242 22 56 0 0 chr3 158919086 158919122 -68605456 + AT_rich Low_complexity Low_complexity 1 36 0 2234 99 0 50 chr3 158919171 158919494 -68605084 - AluSc SINE Alu -2 307 1 2223 124 3 0 chr3 158919509 158919816 -68604762 - AluSg SINE Alu -2 308 1 2057 128 3 10 chr3 158919818 158920116 -68604462 - AluSx SINE Alu -16 296 1 513 189 35 53 chr3 158920134 158920303 -68604275 + MLT1C LTR MaLR 113 278 -189 2238 117 3 3 chr3 158920351 158920651 -68603927 + AluSx SINE Alu 1 300 -12 2298 109 0 0 chr3 158920660 158920962 -68603616 + AluSx SINE Alu 1 302 -10 1240 181 40 102 chr3 158921268 158921388 -68603190 + AluJo SINE Alu 5 131 -181 2052 118 30 23 chr3 158921388 158921692 -68602886 - AluSx SINE Alu -6 306 1 2314 93 7 20 chr3 158921692 158921993 -68602585 - AluSx SINE Alu -15 297 1 1240 181 40 102 chr3 158921993 158922196 -68602382 + AluJo SINE Alu 129 309 -3 1795 149 17 10 chr3 158922206 158922494 -68602084 + AluSx SINE Alu 1 290 -22 308 236 69 0 chr3 158922531 158922603 -68601975 + L2 LINE L2 3221 3297 -16 2390 91 3 3 chr3 158922604 158922912 -68601666 - AluSg SINE Alu -2 308 1 933 206 23 11 chr3 158922916 158923071 -68601507 - AluJb SINE Alu -20 292 133 2291 90 20 7 chr3 158923071 158923371 -68601207 - AluY SINE Alu -3 308 5 933 206 23 11 chr3 158923371 158923390 -68601188 - AluJb SINE Alu -179 133 116 315 209 128 23 chr3 158923391 158923477 -68601101 - MIR SINE MIR -76 132 38 497 252 0 28 chr3 158924052 158924159 -68600419 - FLAM_A SINE Alu -37 105 2 588 180 195 16 chr3 158924222 158924350 -68600228 - AluJb SINE Alu -30 282 132 1869 148 3 27 chr3 158924350 158924648 -68599930 - AluSx SINE Alu 0 312 22 826 163 0 41 chr3 158924772 158924919 -68599659 + FLAM_C SINE Alu 3 143 0 186 167 0 0 chr3 158925018 158925054 -68599524 + (CATA)n Simple_repeat Simple_repeat 4 39 0 255 239 120 0 chr3 158925114 158925143 -68599435 + L1MC/D LINE L1 5797 5821 -1987 2274 106 3 3 chr3 158925143 158925444 -68599134 + AluSg SINE Alu 1 301 -9 255 239 120 0 chr3 158925444 158925506 -68599072 + L1MC/D LINE L1 5821 5899 -1909 2265 101 3 0 chr3 158925734 158926022 -68598556 + AluSg SINE Alu 1 289 -21 2255 117 0 0 chr3 158926069 158926367 -68598211 + AluSg SINE Alu 1 298 -12 237 104 104 0 chr3 158926368 158926416 -68598162 + Alu SINE Alu 249 301 0 1877 164 3 13 chr3 158926579 158926891 -68597687 - AluJb SINE Alu -3 309 1 527 80 0 0 chr3 158926894 158926969 -68597609 - AluJb SINE Alu 0 312 238 966 140 0 7 chr3 158926972 158927115 -68597463 - AluJb SINE Alu -170 142 1 1344 173 38 4 chr3 158927991 158928228 -68596350 + AluJb SINE Alu 1 245 -67 2699 70 3 36 chr3 158928231 158928617 -68595961 + MER41A LTR ERV1 2 374 -180 346 248 238 0 chr3 158929332 158929437 -68595141 - MIR SINE MIR -80 182 53 204 40 0 0 chr3 158930203 158930228 -68594350 + (CGG)n Simple_repeat Simple_repeat 1 25 0 2194 85 33 7 chr3 158931004 158931309 -68593269 - AluSp SINE Alu 0 313 1 1210 179 54 78 chr3 158931376 158931672 -68592906 + AluJb SINE Alu 23 311 -1 2182 121 3 60 chr3 158931713 158932178 -68592400 - AluSc SINE Alu -12 297 1 1868 154 16 52 chr3 158932199 158932236 -68592342 - L1MB4 LINE L1 -10 6170 6133 749 182 0 23 chr3 158932236 158932368 -68592210 - FLAM_C SINE Alu -2 131 3 1868 154 16 52 chr3 158932368 158932712 -68591866 - L1MB4 LINE L1 -47 6133 5803 2036 129 3 14 chr3 158932712 158933006 -68591572 + AluSx SINE Alu 1 291 -21 2570 77 0 0 chr3 158933043 158933356 -68591222 + AluSq SINE Alu 1 313 0 4416 181 66 8 chr3 158933356 158933729 -68590849 + L1MC3 LINE L1 6453 6803 -982 240 86 0 0 chr3 158933729 158933764 -68590814 + (CA)n Simple_repeat Simple_repeat 2 36 0 4416 181 66 8 chr3 158933764 158934355 -68590223 + L1MC3 LINE L1 6803 7473 -312 1816 71 4 9 chr3 158934357 158934583 -68589995 + AluY SINE Alu 1 225 -86 865 227 45 20 chr3 158934695 158934942 -68589636 - AluSg SINE Alu -56 254 2 940 239 9 13 chr3 158934977 158935207 -68589371 - AluSq SINE Alu -49 264 36 216 0 0 0 chr3 158935237 158935261 -68589317 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 1041 169 0 0 chr3 158935274 158935440 -68589138 + AluJb SINE Alu 140 305 -7 1829 124 28 68 chr3 158936002 158936324 -68588254 - AluJb SINE Alu -3 309 1 1957 143 7 23 chr3 158936354 158936662 -68587916 - AluJb SINE Alu -9 303 1 450 94 0 0 chr3 158936890 158936954 -68587624 + (TTCTCC)n Simple_repeat Simple_repeat 4 67 0 1666 156 82 0 chr3 158936954 158937236 -68587342 - AluSx SINE Alu -7 305 1 1746 89 0 0 chr3 158937447 158937671 -68586907 + AluY SINE Alu 83 306 -5 608 192 32 16 chr3 158938601 158938726 -68585852 + MER5B DNA MER1_type 4 130 -48 240 254 42 14 chr3 158938945 158939016 -68585562 + MIR SINE MIR 118 190 -72 1106 163 105 181 chr3 158939035 158939119 -68585459 + MLT2D LTR ERVL 1 90 -324 2496 79 0 16 chr3 158939119 158939299 -68585279 - AluSq SINE Alu 0 313 139 2364 61 27 14 chr3 158939299 158939596 -68584982 - AluY SINE Alu -10 301 1 2496 79 0 16 chr3 158939596 158939733 -68584845 - AluSq SINE Alu -174 139 1 1106 163 105 181 chr3 158939733 158939792 -68584786 + MLT2D LTR ERVL 90 152 -262 1899 122 18 70 chr3 158939792 158940121 -68584457 - AluSx SINE Alu 0 312 1 1106 163 105 181 chr3 158940121 158940424 -68584154 + MLT2D LTR ERVL 152 414 0 303 276 147 49 chr3 158940666 158940776 -68583802 + MIR3 SINE MIR 6 139 -69 213 39 0 0 chr3 158940776 158940802 -68583776 + (TTTTA)n Simple_repeat Simple_repeat 2 27 0 303 276 147 49 chr3 158940802 158940854 -68583724 + MIR3 SINE MIR 139 184 -24 3732 101 31 4 chr3 158941133 158941646 -68582932 - MER1A DNA MER1_type 0 527 1 1140 159 0 0 chr3 158941739 158941909 -68582669 - FRAM SINE Alu -8 168 1 875 287 77 32 chr3 158942675 158942735 -68581843 - MLT1K LTR MaLR 0 588 532 198 0 0 0 chr3 158942735 158942757 -68581821 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 875 287 77 32 chr3 158942757 158943072 -68581506 - MLT1K LTR MaLR -56 532 196 1756 88 0 0 chr3 158943109 158943324 -68581254 + AluSx SINE Alu 1 215 -97 2189 116 7 0 chr3 158943840 158944141 -68580437 + AluSx SINE Alu 1 303 -9 1595 172 48 10 chr3 158944225 158944516 -68580062 - AluJb SINE Alu -10 302 1 1079 168 0 0 chr3 158944640 158944801 -68579777 + FRAM SINE Alu 1 161 -15 419 215 41 50 chr3 158944878 158944999 -68579579 + MLT1L LTR MaLR 149 268 -347 222 37 0 0 chr3 158945056 158945083 -68579495 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 1712 162 6 41 chr3 158945097 158945223 -68579355 + AluSx SINE Alu 1 130 -182 276 77 0 0 chr3 158945223 158945262 -68579316 + (CA)n Simple_repeat Simple_repeat 1 39 0 1712 162 6 41 chr3 158945262 158945450 -68579128 + AluSx SINE Alu 130 304 -8 383 286 217 7 chr3 158945761 158945947 -68578631 + MIR SINE MIR 38 261 -1 1731 167 48 10 chr3 158946119 158946412 -68578166 - AluJo SINE Alu -8 304 1 734 229 62 22 chr3 158948030 158948209 -68576369 - MER5A DNA MER1_type 0 189 4 1528 148 53 82 chr3 158948794 158949112 -68575466 - AluJo SINE Alu -3 309 1 880 188 62 0 chr3 158949162 158949338 -68575240 - MER5A DNA MER1_type 0 189 3 2024 137 10 20 chr3 158949941 158950241 -68574337 - AluSx SINE Alu -13 299 3 2191 128 0 0 chr3 158950773 158951069 -68573509 - AluSx SINE Alu -16 296 1 414 250 110 61 chr3 158951069 158951170 -68573408 + MER5B DNA MER1_type 3 116 -62 2600 60 0 0 chr3 158951170 158951472 -68573106 - AluY SINE Alu -9 302 1 414 250 110 61 chr3 158951472 158951534 -68573044 + MER5B DNA MER1_type 116 174 -4 281 289 84 72 chr3 158952210 158952376 -68572202 + MER5A DNA MER1_type 1 168 -21 257 288 33 78 chr3 158952243 158952396 -68572182 - MER5A DNA MER1_type -26 163 18 * 23 0 0 0 chr3 158952407 158952430 -68572148 + AT_rich Low_complexity Low_complexity 1 23 0 360 0 0 0 chr3 158952705 158952745 -68571833 + (TG)n Simple_repeat Simple_repeat 2 41 0 434 293 133 5 chr3 158953107 158953295 -68571283 - MIR SINE MIR -16 246 35 2118 158 0 0 chr3 158953609 158953919 -68570659 + AluSx SINE Alu 1 310 -2 455 223 88 61 chr3 158954042 158954370 -68570208 + L1ME4a LINE L1 5752 6088 -33 348 236 21 86 chr3 158955554 158955694 -68568884 + MIR3 SINE MIR 15 145 -63 240 111 0 0 chr3 158958648 158958684 -68565894 + (A)n Simple_repeat Simple_repeat 1 36 0 243 125 0 0 chr3 158959067 158959107 -68565471 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 281 310 119 5 chr3 158959134 158959321 -68565257 - MIR SINE MIR -10 252 38 22 0 0 0 chr3 158964440 158964462 -68560116 + GC_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr3 158964487 158964513 -68560065 + GC_rich Low_complexity Low_complexity 1 26 0 713 197 206 9 chr3 158965019 158965252 -68559326 - L1ME3 LINE L1 -322 5840 5562 1771 158 70 0 chr3 158965383 158965668 -68558910 - AluJo SINE Alu -7 305 1 716 223 109 0 chr3 158965670 158965845 -68558733 - MIR SINE MIR 0 262 69 184 239 70 42 chr3 158965905 158965976 -68558602 - L3b LINE CR1 -196 1387 1315 386 340 41 10 chr3 158967185 158967382 -68557196 - L1MC4a LINE L1 -1747 6061 5859 639 296 45 12 chr3 158967401 158967644 -68556934 - L1MC4a LINE L1 -2064 5744 5494 1227 139 0 0 chr3 158967650 158967816 -68556762 - AluSc SINE Alu -12 297 132 2317 62 31 7 chr3 158967816 158968106 -68556472 - AluY SINE Alu -14 297 1 468 70 0 0 chr3 158968112 158968183 -68556395 + Alu SINE Alu 242 312 0 610 317 67 17 chr3 158968340 158968696 -68555882 - L1ME3A LINE L1 -220 5950 5577 708 332 26 0 chr3 158968768 158968997 -68555581 + MIR SINE MIR 6 240 -22 2232 219 33 74 chr3 158969172 158969984 -68554594 - L1MC5 LINE L1 -146 7815 7037 218 362 91 27 chr3 158970139 158970360 -68554218 - L2 LINE L2 -2 3270 3036 199 340 13 82 chr3 158970449 158970608 -68553970 - L2 LINE L2 0 3272 3125 195 191 48 0 chr3 158970881 158970923 -68553655 + L2 LINE L2 3005 3048 -265 1344 89 0 0 chr3 158971004 158971173 -68553405 - AluSg/x SINE Alu -14 298 130 337 298 126 26 chr3 158971196 158971347 -68553231 + L2 LINE L2 3104 3269 -3 1652 154 0 35 chr3 158972088 158972374 -68552204 - AluJb SINE Alu -8 304 29 306 0 0 0 chr3 158972401 158972435 -68552143 + (T)n Simple_repeat Simple_repeat 1 34 0 809 302 158 20 chr3 158972590 158973710 -68550868 - L2 LINE L2 0 3272 1999 212 194 208 28 chr3 158973708 158973780 -68550798 + L2 LINE L2 3008 3092 -180 * 728 253 29 6 chr3 158973928 158974098 -68550480 - MIR SINE MIR -55 207 34 574 279 102 9 chr3 158974675 158974901 -68549677 + MIR SINE MIR 3 249 -13 819 236 125 9 chr3 158974970 158975186 -68549392 + MLT1G LTR MaLR 3 243 -347 461 293 92 31 chr3 158975739 158976428 -68548150 - L1MEc LINE L1 -867 1623 978 2148 159 0 0 chr3 158976428 158976737 -68547841 - AluSx SINE Alu -3 309 1 461 293 92 31 chr3 158976737 158976885 -68547693 - L1MEc LINE L1 -1512 978 841 2232 82 14 10 chr3 158976885 158977176 -68547402 - AluY SINE Alu -19 292 1 461 293 92 31 chr3 158977176 158977599 -68546979 - L1MEc LINE L1 -1649 841 242 21 71 0 0 chr3 158977735 158977777 -68546801 + AT_rich Low_complexity Low_complexity 1 42 0 371 375 11 16 chr3 158977831 158978015 -68546563 - MIR SINE MIR -46 216 34 360 242 38 129 chr3 158978097 158978283 -68546295 - L1MC4 LINE L1 -71 7971 7803 519 280 0 24 chr3 158978303 158978471 -68546107 - L1ME2 LINE L1 -34 6130 5967 369 0 0 0 chr3 158978471 158978512 -68546066 + (CA)n Simple_repeat Simple_repeat 2 42 0 2686 46 0 0 chr3 158978527 158978829 -68545749 + AluY SINE Alu 2 303 -8 327 269 25 50 chr3 158978963 158979082 -68545496 + L1ME4a LINE L1 5957 6072 -49 2420 110 0 0 chr3 158979228 158979537 -68545041 + AluSx SINE Alu 1 309 -3 1654 170 35 10 chr3 158979634 158979923 -68544655 + AluJb SINE Alu 1 296 -16 330 98 0 0 chr3 158980028 158980079 -68544499 + Alu SINE Alu 246 296 -6 30 0 0 0 chr3 158980200 158980230 -68544348 + AT_rich Low_complexity Low_complexity 1 30 0 1510 101 0 97 chr3 158980304 158980408 -68544170 - AluSc SINE Alu -94 215 145 2246 127 0 0 chr3 158980408 158980715 -68543863 - AluY SINE Alu -4 307 1 1510 101 0 97 chr3 158980715 158980848 -68543730 - AluSc SINE Alu -164 145 1 1867 141 0 52 chr3 158980859 158981015 -68543563 - AluSx SINE Alu -23 289 155 2050 90 0 108 chr3 158981015 158981347 -68543231 - AluSg SINE Alu -14 296 1 1867 141 0 52 chr3 158981347 158981495 -68543083 - AluSx SINE Alu -157 155 1 539 341 48 22 chr3 158981532 158981924 -68542654 - L1ME2 LINE L1 -1984 5824 5417 2258 105 3 29 chr3 158981924 158982097 -68542481 - AluSx SINE Alu -5 307 144 2355 84 3 0 chr3 158982097 158982393 -68542185 - AluSp SINE Alu -11 302 6 2258 105 3 29 chr3 158982393 158982534 -68542044 - AluSx SINE Alu -168 144 1 539 341 48 22 chr3 158982534 158982602 -68541976 - L1ME2 LINE L1 -2391 5417 5352 2338 125 0 0 chr3 158982655 158982967 -68541611 - AluSx SINE Alu 0 312 1 2173 113 3 0 chr3 158983055 158983346 -68541232 - AluSp SINE Alu -21 292 1 1184 181 31 22 chr3 158983357 158983374 -68541204 - AluJo SINE Alu 0 312 297 2482 70 6 19 chr3 158983374 158983688 -68540890 - AluY SINE Alu -1 310 1 1184 181 31 22 chr3 158983688 158983896 -68540682 - AluJo SINE Alu -15 297 85 494 298 66 35 chr3 158983904 158984132 -68540446 - L1ME2 LINE L1 -1276 4870 4636 2384 92 0 3 chr3 158984189 158984494 -68540084 + AluSc SINE Alu 1 304 -5 999 310 50 17 chr3 158984665 158985084 -68539494 + LTR16A LTR ERVL 16 448 -2 2196 112 0 17 chr3 158985184 158985373 -68539205 - AluSq SINE Alu 0 322 139 2174 116 3 3 chr3 158985373 158985674 -68538904 - AluSx SINE Alu -11 301 1 2196 112 0 17 chr3 158985674 158985811 -68538767 - AluSq SINE Alu -183 139 1 1281 147 9 43 chr3 158985837 158986068 -68538510 - AluJo SINE Alu -5 307 85 41 36 0 0 chr3 158986120 158986175 -68538403 + AT_rich Low_complexity Low_complexity 1 55 0 1802 87 4 0 chr3 158986175 158986405 -68538173 - AluSc SINE Alu -8 301 71 * 2287 105 3 3 chr3 158986403 158986697 -68537881 - AluSg SINE Alu -16 294 1 946 202 71 5 chr3 158986701 158986899 -68537679 - AluJo SINE Alu -95 217 7 26 0 0 0 chr3 158987375 158987401 -68537177 + AT_rich Low_complexity Low_complexity 1 26 0 1817 166 7 3 chr3 158987678 158987962 -68536616 + AluJb SINE Alu 1 285 -27 186 43 0 0 chr3 158988483 158988506 -68536072 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 394 39 65 0 chr3 158988507 158988584 -68535994 + (CCTTG)n Simple_repeat Simple_repeat 3 84 0 2027 115 14 0 chr3 158988597 158989042 -68535536 - AluSx SINE Alu 0 449 1 3902 122 12 72 chr3 158989305 158989715 -68534863 + L1MB2 LINE L1 5483 5916 -255 2279 100 0 38 chr3 158989715 158990035 -68534543 + AluSg SINE Alu 1 308 -2 3902 122 12 72 chr3 158990035 158990237 -68534341 + L1MB2 LINE L1 5916 6048 -123 1958 141 17 3 chr3 158990237 158990527 -68534051 + AluJb SINE Alu 1 294 -18 3902 122 12 72 chr3 158990527 158990640 -68533938 + L1MB2 LINE L1 6048 6166 -5 2657 68 0 0 chr3 158990642 158990953 -68533625 + AluY SINE Alu 1 311 0 408 250 105 23 chr3 158991023 158991195 -68533383 + L1MEd LINE L1 1026 1211 -4908 330 285 81 8 chr3 158991263 158991386 -68533192 + L1MEd LINE L1 1264 1395 -4915 847 98 115 8 chr3 158991392 158991514 -68533064 + AluSq/x SINE Alu 1 135 -177 2176 122 3 3 chr3 158991514 158991818 -68532760 + AluSq SINE Alu 1 304 -9 466 177 94 10 chr3 158991818 158991914 -68532664 + L1MC1 LINE L1 6221 6324 -9 2380 90 0 28 chr3 158991914 158992236 -68532342 + AluSq SINE Alu 1 313 0 1925 146 31 0 chr3 158992458 158992745 -68531833 - AluSx SINE Alu -14 298 3 1582 165 9 54 chr3 158993161 158993332 -68531246 - AluJo SINE Alu 0 302 150 1495 148 55 35 chr3 158993332 158993486 -68531092 - AluJb SINE Alu -16 296 132 2033 128 66 0 chr3 158993486 158993775 -68530803 - AluSx SINE Alu -4 308 1 1495 148 55 35 chr3 158993775 158993910 -68530668 - AluJb SINE Alu -180 132 1 1582 165 9 54 chr3 158993910 158994054 -68530524 - AluJo SINE Alu -152 150 1 1261 243 42 55 chr3 158994167 158994253 -68530325 + L2 LINE L2 2236 2322 -992 2128 127 0 3 chr3 158994253 158994560 -68530018 + AluSx SINE Alu 1 306 -6 2256 111 3 0 chr3 158994562 158994860 -68529718 + AluSp SINE Alu 1 299 -14 2273 103 0 0 chr3 158994860 158995141 -68529437 + AluSx SINE Alu 1 284 -28 360 0 0 0 chr3 158995141 158995181 -68529397 + (CA)n Simple_repeat Simple_repeat 1 40 0 1261 243 42 55 chr3 158995190 158995502 -68529076 + L2 LINE L2 2321 2633 -681 182 214 0 0 chr3 158995506 158995548 -68529030 + L2 LINE L2 3272 3313 0 2388 95 3 0 chr3 158995927 158996223 -68528355 + AluSx SINE Alu 1 297 -15 392 290 56 124 chr3 158996953 158997278 -68527300 + L2 LINE L2 2368 2625 -688 1989 160 7 0 chr3 158997278 158997585 -68526993 - AluJb SINE Alu -2 310 2 392 290 56 124 chr3 158997585 158997938 -68526640 + L2 LINE L2 2625 3000 -313 728 184 28 0 chr3 158997954 158998095 -68526483 - MLT1G1 LTR MaLR -3 592 448 1752 130 50 60 chr3 158998242 158998543 -68526035 + AluSg SINE Alu 1 298 -12 372 289 132 29 chr3 158998546 158998750 -68525828 - MLT1G1 LTR MaLR -370 225 1 203 379 63 21 chr3 158998750 158998940 -68525638 + L2 LINE L2 3027 3224 -89 577 267 34 23 chr3 158999217 158999393 -68525185 + MLT1J2 LTR MaLR 1 178 -272 1641 101 4 9 chr3 158999404 158999632 -68524946 - AluSq SINE Alu -17 296 70 2377 83 0 26 chr3 158999663 158999975 -68524603 + AluSq SINE Alu 1 304 -9 331 293 35 41 chr3 159000103 159000314 -68524264 - L1MC5 LINE L1 -475 7493 7422 1853 146 62 0 chr3 159000314 159000588 -68523990 + AluSg SINE Alu 1 291 -19 331 293 35 41 chr3 159000588 159000743 -68523835 - L1MC5 LINE L1 -546 7422 7268 180 0 0 0 chr3 159000784 159000804 -68523774 + (TA)n Simple_repeat Simple_repeat 2 21 0 1923 128 0 92 chr3 159000804 159001131 -68523447 - AluJb SINE Alu -15 297 1 524 169 36 81 chr3 159001761 159001777 -68522801 - L1MC3 LINE L1 -1 7769 7754 2228 119 3 0 chr3 159001777 159002072 -68522506 + AluSx SINE Alu 1 296 -16 524 169 36 81 chr3 159002072 159002130 -68522448 - L1MC3 LINE L1 -16 7754 7695 2286 119 3 3 chr3 159002130 159002440 -68522138 + AluSx SINE Alu 1 310 -2 524 169 36 81 chr3 159002440 159002582 -68521996 - L1MC3 LINE L1 -75 7695 6137 820 241 0 18 chr3 159002582 159002752 -68521826 - FRAM SINE Alu -9 167 1 2207 109 7 0 chr3 159002769 159003062 -68521516 - AluSg SINE Alu -15 295 1 1175 170 0 40 chr3 159003062 159003309 -68521269 - L1MC3 LINE L1 -195 7590 7354 1158 114 0 36 chr3 159003310 159003477 -68521101 - AluSq SINE Alu -18 295 135 2057 81 92 4 chr3 159003477 159003750 -68520828 - AluSx SINE Alu -15 297 1 1201 116 143 0 chr3 159003753 159003977 -68520601 - L1MC3 LINE L1 -422 7363 7108 659 223 11 65 chr3 159003979 159004065 -68520513 - MLT1C LTR MaLR 0 467 395 2151 156 12 18 chr3 159004065 159004404 -68520174 - MER1B DNA MER1_type 0 337 1 659 223 11 65 chr3 159004404 159004491 -68520087 - MLT1C LTR MaLR -72 395 304 1806 198 16 21 chr3 159004491 159004869 -68519709 - MSTD LTR MaLR 0 396 21 811 219 108 32 chr3 159004873 159005152 -68519426 - MLT1C LTR MaLR -167 300 1 2620 56 0 3 chr3 159005177 159005482 -68519096 - AluY SINE Alu -7 304 1 1861 144 30 13 chr3 159005485 159005784 -68518794 - AluJb SINE Alu -6 306 3 332 152 114 57 chr3 159005785 159005890 -68518688 - L1MC3 LINE L1 -687 7098 6988 * 997 246 91 4 chr3 159005867 159006131 -68518447 - L1M4 LINE L1 -1849 4297 4011 250 200 0 0 chr3 159006132 159006187 -68518391 - L1MCa LINE L1 -3947 2479 2425 320 161 148 0 chr3 159006192 159006273 -68518305 - L1MC2 LINE L1 -1 6343 6251 300 104 0 0 chr3 159006257 159006305 -68518273 - L1M4 LINE L1 -913 5233 5186 * 233 146 0 0 chr3 159006297 159006338 -68518240 - L1MCa LINE L1 -3977 2449 2409 * 397 119 208 0 chr3 159006399 159006500 -68518078 - L1MCa LINE L1 -4023 2403 2282 1860 157 3 17 chr3 159006512 159006675 -68517903 - AluJb SINE Alu -16 296 137 2317 82 3 0 chr3 159006675 159006966 -68517612 - AluSp SINE Alu -21 292 1 1860 157 3 17 chr3 159006966 159007102 -68517476 - AluJb SINE Alu -175 137 1 991 223 19 5 chr3 159007148 159007363 -68517215 + MER20 DNA MER1_type 2 219 0 2126 126 3 7 chr3 159007437 159007738 -68516840 - AluSx SINE Alu -12 300 1 329 230 110 10 chr3 159007772 159007872 -68516706 - MLT1I LTR MaLR -299 110 1 1057 263 140 20 chr3 159007940 159008347 -68516231 - LTR16B LTR ERVL 0 464 9 356 314 36 0 chr3 159008450 159008590 -68515988 - HERVL LTR ERVL -307 5347 5203 1483 111 0 10 chr3 159008659 159008867 -68515711 + AluJo SINE Alu 6 211 -101 436 301 64 0 chr3 159008990 159009146 -68515432 - HERVL LTR ERVL -729 4925 4760 268 188 0 0 chr3 159009446 159009494 -68515084 - L1MC2 LINE L1 -1877 5931 5884 2303 113 0 3 chr3 159009569 159009869 -68514709 - AluSx SINE Alu -13 299 1 938 281 63 14 chr3 159009951 159010300 -68514278 - L1MC2 LINE L1 -2022 5786 5421 262 188 14 29 chr3 159010302 159010371 -68514207 - MER116 DNA Mariner 0 80 13 32 0 0 0 chr3 159010426 159010458 -68514120 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr3 159010872 159010894 -68513684 + (TCCTG)n Simple_repeat Simple_repeat 1 22 0 518 299 70 0 chr3 159011130 159011331 -68513247 - L1ME LINE L1 -304 5817 5603 2104 137 0 7 chr3 159011665 159011972 -68512606 + AluSx SINE Alu 8 312 0 640 278 120 21 chr3 159012016 159012250 -68512328 - MIR SINE MIR 0 262 6 2641 61 0 0 chr3 159012403 159012714 -68511864 - AluY SINE Alu 0 311 1 2384 94 0 0 chr3 159012723 159013021 -68511557 - AluSg SINE Alu -11 299 2 186 103 0 0 chr3 159013121 159013150 -68511428 + (TGGA)n Simple_repeat Simple_repeat 2 30 0 596 268 106 53 chr3 159013277 159013579 -68510999 + L2 LINE L2 2988 3305 -8 23 86 0 0 chr3 159013778 159013836 -68510742 + GC_rich Low_complexity Low_complexity 1 58 0 864 266 55 4 chr3 159014608 159014716 -68509862 + AluJb SINE Alu 1 102 -200 189 0 0 0 chr3 159014716 159014737 -68509841 + (TAAA)n Simple_repeat Simple_repeat 3 23 0 864 266 55 4 chr3 159014737 159014899 -68509679 + AluJb SINE Alu 102 285 -17 207 192 0 39 chr3 159016538 159016590 -68507988 + (CGGGG)n Simple_repeat Simple_repeat 1 50 0 210 171 0 0 chr3 159017146 159017187 -68507391 + CT-rich Low_complexity Low_complexity 3 43 0 321 89 0 0 chr3 159018383 159018428 -68506150 + (TG)n Simple_repeat Simple_repeat 2 46 0 327 49 0 0 chr3 159021461 159021502 -68503076 + (TG)n Simple_repeat Simple_repeat 1 41 0 1774 158 0 67 chr3 159021523 159021839 -68502739 - AluJb SINE Alu -17 295 1 2054 105 6 19 chr3 159021848 159022029 -68502549 - L1PB2 LINE L1 -1 6150 5973 2102 139 20 0 chr3 159022029 159022324 -68502254 - AluSx SINE Alu -11 301 1 2054 105 6 19 chr3 159022324 159022457 -68502121 - L1PB2 LINE L1 -178 5973 5840 1337 172 8 52 chr3 159022912 159023046 -68501532 - AluJo SINE Alu -57 255 137 2484 80 0 0 chr3 159023046 159023345 -68501233 - AluSq SINE Alu -12 301 3 1337 172 8 52 chr3 159023345 159023477 -68501101 - AluJo SINE Alu -175 137 1 2180 132 0 0 chr3 159023719 159024015 -68500563 - AluSq SINE Alu -17 296 1 182 315 37 0 chr3 159024222 159024276 -68500302 - L2 LINE L2 -80 3233 3178 186 336 19 29 chr3 159024302 159024406 -68500172 - L3 LINE CR1 -2 1575 1473 571 137 39 0 chr3 159024659 159024761 -68499817 - AluSg/x SINE Alu 0 309 204 2576 48 0 7 chr3 159024778 159025087 -68499491 - AluY SINE Alu -4 307 1 224 227 0 0 chr3 159025370 159025414 -68499164 + (TATATG)n Simple_repeat Simple_repeat 5 48 0 2220 87 0 14 chr3 159025458 159025733 -68498845 - AluSx SINE Alu -41 271 1 1123 203 17 17 chr3 159025733 159026023 -68498555 - L1ME2 LINE L1 -187 5977 5688 186 304 164 9 chr3 159026072 159026286 -68498292 - L2 LINE L2 -1460 1854 1608 1580 186 57 11 chr3 159026932 159027212 -68497366 - AluJo SINE Alu -19 293 1 463 234 14 48 chr3 159027349 159027494 -68497084 - L1ME3 LINE L1 -1 6163 6024 1299 58 0 0 chr3 159027494 159027649 -68496929 - AluY SINE Alu -17 294 140 849 219 22 31 chr3 159027659 159027887 -68496691 - L1ME3 LINE L1 -159 6005 5780 385 256 0 0 chr3 159028105 159028187 -68496391 - L1ME3 LINE L1 -2168 5640 5559 303 136 61 45 chr3 159028211 159028277 -68496301 - L1MC5 LINE L1 -33 7928 7862 312 70 0 0 chr3 159028652 159028695 -68495883 + (TG)n Simple_repeat Simple_repeat 1 43 0 575 297 218 21 chr3 159028699 159029240 -68495338 + L2 LINE L2 2664 3313 0 442 252 185 0 chr3 159029256 159029391 -68495187 + MIR SINE MIR 20 179 -83 1844 161 3 35 chr3 159030333 159030650 -68493928 - AluJo SINE Alu -5 307 1 233 300 14 0 chr3 159030652 159030722 -68493856 + Charlie8 DNA MER1_type 1357 1427 -990 225 270 101 101 chr3 159031091 159031250 -68493328 - MIR SINE MIR -14 248 90 1752 190 0 29 chr3 159031696 159032012 -68492566 - AluJo SINE Alu -5 307 1 384 260 32 65 chr3 159032240 159032394 -68492184 - MIR SINE MIR -20 242 94 423 0 0 0 chr3 159033639 159033686 -68490892 + (CA)n Simple_repeat Simple_repeat 1 47 0 621 219 59 18 chr3 159033843 159034012 -68490566 - MIR SINE MIR -60 202 27 1002 184 6 0 chr3 159034071 159034234 -68490344 - AluJb SINE Alu -20 292 129 180 0 0 0 chr3 159034661 159034681 -68489897 + (CTG)n Simple_repeat Simple_repeat 3 22 0 408 40 0 0 chr3 159034681 159034731 -68489847 + (TG)n Simple_repeat Simple_repeat 1 50 0 3794 117 7 0 chr3 159036122 159036663 -68487915 + L1PA13 LINE L1 5615 6159 -4 22 0 0 0 chr3 159036664 159036686 -68487892 + AT_rich Low_complexity Low_complexity 1 22 0 2293 111 0 0 chr3 159036923 159037229 -68487349 - AluY SINE Alu -5 306 1 206 336 107 0 chr3 159037235 159037357 -68487221 - MIR SINE MIR -116 146 12 483 190 20 133 chr3 159037570 159037765 -68486813 + MER5B DNA MER1_type 5 177 -1 182 277 31 15 chr3 159037926 159037991 -68486587 - MIR SINE MIR -141 121 56 498 304 52 52 chr3 159038048 159038337 -68486241 + L2 LINE L2 2112 2400 -914 318 282 234 0 chr3 159038536 159038660 -68485918 + L2 LINE L2 3118 3270 -2 657 214 15 70 chr3 159039660 159039861 -68484717 + MIR SINE MIR 67 256 -6 594 306 20 12 chr3 159040820 159041035 -68483543 - MIR SINE MIR -12 250 35 485 287 92 5 chr3 159041059 159041254 -68483324 + MIR SINE MIR 36 247 -15 216 273 129 30 chr3 159041457 159041589 -68482989 + MIR3 SINE MIR 3 147 -61 332 233 83 25 chr3 159041880 159042000 -68482578 + MIR SINE MIR 20 146 -116 192 273 111 30 chr3 159042047 159042146 -68482432 + L2 LINE L2 3154 3260 -12 278 365 24 18 chr3 159042222 159042392 -68482186 - MER5A DNA MER1_type -2 187 17 221 163 0 0 chr3 159042887 159042930 -68481648 + GA-rich Low_complexity Low_complexity 1 43 0 25 51 0 0 chr3 159043300 159043339 -68481239 + AT_rich Low_complexity Low_complexity 1 39 0 239 226 16 0 chr3 159043395 159043457 -68481121 + MIR SINE MIR 161 223 -39 190 169 108 62 chr3 159044997 159045062 -68479516 - L2 LINE L2 0 3313 3246 220 246 88 0 chr3 159045716 159045830 -68478748 - L2 LINE L2 -164 3108 2985 355 299 0 0 chr3 159045931 159046038 -68478540 - MIR3 SINE MIR -23 185 79 980 164 261 40 chr3 159046365 159046553 -68478025 - MLT1A1 LTR MaLR 0 365 220 183 42 0 0 chr3 159046553 159046577 -68478001 + (TTAAA)n Simple_repeat Simple_repeat 5 28 0 2218 65 11 0 chr3 159046577 159046839 -68477739 - AluY SINE Alu -27 284 20 980 164 261 40 chr3 159046839 159046948 -68477630 - MLT1A1 LTR MaLR -144 221 1 231 212 32 32 chr3 159046956 159047047 -68477531 + MIR SINE MIR 64 155 -62 2401 84 3 0 chr3 159047401 159047698 -68476880 - AluSx SINE Alu -14 298 1 1155 52 0 0 chr3 159048522 159048658 -68475920 - AluY SINE Alu -19 292 157 387 80 0 0 chr3 159048658 159048708 -68475870 - Alu SINE Alu -249 51 2 4938 151 35 2 chr3 159048727 159049580 -68474998 - L1MB7 LINE L1 -3 6181 5301 1520 199 17 56 chr3 159050466 159050822 -68473756 + MLT1A2 LTR MaLR 3 344 -30 255 191 0 0 chr3 159050904 159050967 -68473611 + (CA)n Simple_repeat Simple_repeat 1 63 0 268 180 0 49 chr3 159051240 159051301 -68473277 + MER113 DNA MER1_type? 464 521 0 960 161 0 65 chr3 159051354 159051522 -68473056 + AluJo SINE Alu 3 159 -153 1246 148 9 0 chr3 159051522 159051739 -68472839 - L1 LINE L1 -789 5357 5139 1546 257 24 31 chr3 159052676 159053005 -68471573 - L1ME LINE L1 -640 5522 5192 1615 143 24 68 chr3 159053005 159053298 -68471280 - AluJb SINE Alu -32 280 1 1546 257 24 31 chr3 159053298 159053804 -68470774 - L1ME LINE L1 -970 5192 4696 2184 206 43 32 chr3 159053871 159054106 -68470472 - L1ME2 LINE L1 -1 6232 5998 764 249 54 57 chr3 159054106 159054440 -68470138 - L1MA6 LINE L1 -373 5927 5595 * 5423 220 39 30 chr3 159054408 159056074 -68468504 - L1ME2 LINE L1 -716 5519 3844 1560 225 71 8 chr3 159056098 159056574 -68468004 - L1ME2 LINE L1 -3313 2902 2397 440 232 21 0 chr3 159056610 159056705 -68467873 - L1ME3A LINE L1 -39 6131 6035 1648 254 58 19 chr3 159056769 159057202 -68467376 - L1MD2 LINE L1 -22 6337 5888 * 1967 263 95 36 chr3 159057201 159058006 -68466572 - L1ME2 LINE L1 -3961 2294 1538 2353 75 3 39 chr3 159058006 159058314 -68466264 - AluSp SINE Alu -16 297 1 1967 263 95 36 chr3 159058314 159058327 -68466251 - L1ME2 LINE L1 -4717 1538 1527 2459 45 3 3 chr3 159058327 159058637 -68465941 - AluY SINE Alu 0 310 1 1967 263 95 36 chr3 159058637 159058709 -68465869 - L1ME2 LINE L1 -4728 1527 1461 366 85 0 0 chr3 159058709 159058768 -68465810 + (TG)n Simple_repeat Simple_repeat 2 60 0 1967 263 95 36 chr3 159058768 159059228 -68465350 - L1ME2 LINE L1 -4794 1461 862 3574 131 25 15 chr3 159059229 159059833 -68464745 - L1MA7 LINE L1 0 6291 5682 399 145 0 0 chr3 159059834 159059903 -68464675 + L1 LINE L1 4922 4990 -1156 2165 149 0 0 chr3 159059904 159060213 -68464365 + AluSx SINE Alu 1 309 -3 24 32 0 0 chr3 159060233 159060264 -68464314 + AT_rich Low_complexity Low_complexity 1 31 0 1509 164 24 0 chr3 159060267 159060560 -68464018 + L1 LINE L1 4980 5279 -867 681 197 67 39 chr3 159060697 159060905 -68463673 - L1M4 LINE L1 -847 5299 5086 1668 185 19 22 chr3 159060908 159061221 -68463357 + AluJo SINE Alu 1 312 0 1428 160 91 19 chr3 159061230 159061524 -68463054 + AluJo SINE Alu 1 313 0 208 147 0 0 chr3 159061680 159061714 -68462864 + (TA)n Simple_repeat Simple_repeat 1 34 0 2378 104 0 0 chr3 159062139 159062448 -68462130 - AluSx SINE Alu -3 309 1 228 111 0 0 chr3 159062964 159063000 -68461578 + (CCAA)n Simple_repeat Simple_repeat 2 37 0 7245 115 18 11 chr3 159064637 159065900 -68458678 - L1MA3 LINE L1 -2 7722 6446 2273 79 7 26 chr3 159065900 159066204 -68458374 - AluSq SINE Alu -15 298 1 7245 115 18 11 chr3 159066204 159066332 -68458246 - L1MA3 LINE L1 -1278 6446 6320 1359 103 0 0 chr3 159066327 159066512 -68458066 + L1MA2 LINE L1 5660 5844 -460 * 400 221 0 0 chr3 159066534 159066602 -68457976 + AluS SINE Alu 1 68 -235 25 0 0 0 chr3 159066604 159066629 -68457949 + AT_rich Low_complexity Low_complexity 1 25 0 2013 130 0 43 chr3 159066681 159067005 -68457573 - AluSx SINE Alu -2 310 1 9093 151 10 15 chr3 159067009 159068627 -68455951 - L1MA3 LINE L1 -1263 6302 4691 2235 107 0 7 chr3 159068627 159068926 -68455652 - AluY SINE Alu -9 302 6 9093 151 10 15 chr3 159068926 159068958 -68455620 - L1MA3 LINE L1 -2874 4691 4660 1794 91 41 63 chr3 159069058 159069104 -68455474 - L1MA3 LINE L1 -4583 2982 2937 2296 103 36 0 chr3 159069104 159069405 -68455173 - AluSx SINE Alu 0 312 1 1794 91 41 63 chr3 159069405 159069612 -68454966 - L1MA3 LINE L1 -4628 2937 2727 312 102 0 0 chr3 159069612 159069661 -68454917 + (CA)n Simple_repeat Simple_repeat 2 50 0 830 196 0 44 chr3 159069665 159069823 -68454755 - FRAM SINE Alu -15 151 1 1794 91 41 63 chr3 159069823 159069881 -68454697 - L1MA3 LINE L1 -4841 2724 2672 2008 152 50 17 chr3 159070149 159070551 -68454027 - L1MA7 LINE L1 0 6291 5877 333 312 83 23 chr3 159070573 159070814 -68453764 - L1MEc LINE L1 -917 1659 1349 277 318 0 0 chr3 159070874 159070959 -68453619 + L2 LINE L2 48 132 -3182 2714 36 0 0 chr3 159071325 159071634 -68452944 - AluY SINE Alu -1 310 2 378 313 36 36 chr3 159071646 159071924 -68452654 - L1MEc LINE L1 -5840 365 88 180 125 0 0 chr3 159072849 159072881 -68451697 + (CAAAA)n Simple_repeat Simple_repeat 3 34 0 920 279 56 163 chr3 159072941 159073260 -68451318 + AluJb SINE Alu 1 285 -17 312 27 0 0 chr3 159073277 159073314 -68451264 + (CA)n Simple_repeat Simple_repeat 1 37 0 1903 146 0 26 chr3 159076046 159076354 -68448224 + AluJb SINE Alu 1 300 -12 45 37 0 25 chr3 159076387 159076445 -68448133 + AT_rich Low_complexity Low_complexity 1 58 -21 2701 42 0 7 chr3 159076445 159076755 -68447823 - AluY SINE Alu -3 308 1 45 37 0 25 chr3 159076755 159076777 -68447801 + AT_rich Low_complexity Low_complexity 58 79 0 1877 148 10 10 chr3 159076805 159077103 -68447475 - AluJb SINE Alu -14 298 1 2003 118 14 0 chr3 159077108 159077396 -68447182 - AluSx SINE Alu -20 292 1 2515 84 0 0 chr3 159077401 159077712 -68446866 - AluSq SINE Alu -2 311 1 21 36 0 0 chr3 159077777 159077805 -68446773 + AT_rich Low_complexity Low_complexity 1 28 0 1165 101 4 4 chr3 159077805 159078033 -68446545 - L1MA1 LINE L1 -4 6298 6019 340 224 110 86 chr3 159078220 159078387 -68446191 - L1ME LINE L1 -587 5575 5398 2770 60 0 6 chr3 159078387 159078736 -68445842 - L1PA5 LINE L1 0 6154 5808 340 224 110 86 chr3 159078736 159078823 -68445755 - L1ME LINE L1 -764 5398 5315 4266 273 126 54 chr3 159078887 159080439 -68444139 + L2 LINE L2 601 2454 -859 238 253 13 0 chr3 159080439 159080518 -68444060 - MER116 DNA Mariner 0 80 1 4266 273 126 54 chr3 159080518 159081300 -68443278 + L2 LINE L2 2454 3178 -135 11473 44 6 0 chr3 159081315 159083476 -68441102 - L1PA5 LINE L1 0 6154 3984 1036 93 0 0 chr3 159083479 159083619 -68440959 + L1P LINE L1 2849 2988 -3158 237 61 0 0 chr3 159083621 159083654 -68440924 - L1P LINE L1 -3111 3035 3003 * 14556 57 5 4 chr3 159083638 159085551 -68439027 - L1P LINE L1 -2151 3995 2083 1435 198 35 3 chr3 159085540 159085883 -68438695 - L1M4 LINE L1 -784 5362 5009 * 3141 200 60 17 chr3 159085875 159086694 -68437884 - L1M4 LINE L1 -907 5239 4386 1511 97 73 0 chr3 159086761 159086967 -68437611 - MER30 DNA MER1_type -2 228 8 3010 221 55 60 chr3 159086967 159087715 -68436863 - MER89-int LTR ERV1 -2557 4244 3499 1821 174 3 19 chr3 159087715 159088025 -68436553 - AluJo SINE Alu -7 305 1 3010 221 55 60 chr3 159088025 159088132 -68436446 - MER89-int LTR ERV1 -3302 3499 3393 1676 178 3 13 chr3 159088132 159088447 -68436131 + AluSq SINE Alu 1 312 -1 1089 164 6 0 chr3 159088449 159088620 -68435958 + AluSg/x SINE Alu 126 297 -13 972 192 0 53 chr3 159088624 159088832 -68435746 - MER89-int LTR ERV1 -3405 3396 3200 3246 167 50 16 chr3 159089114 159089720 -68434858 - L1MC2 LINE L1 0 6344 5719 2801 214 38 44 chr3 159089723 159090378 -68434200 - MER89-int LTR ERV1 -3605 3196 2546 531 296 13 6 chr3 159090572 159090731 -68433847 - MER89-int LTR ERV1 -4370 277 118 2194 228 19 20 chr3 159090737 159091224 -68433354 - MER89-int LTR ERV1 -4243 2558 2073 * 4307 230 57 65 chr3 159091222 159092641 -68431937 - MER89-int LTR ERV1 -5249 1552 146 2025 172 10 47 chr3 159092690 159093167 -68431411 - MER89 LTR ERV1 -3 556 1 5219 161 20 24 chr3 159093558 159095405 -68429173 + L1MA4 LINE L1 4471 6300 0 2455 87 0 6 chr3 159095510 159095822 -68428756 - AluY SINE Alu -1 310 1 282 328 8 0 chr3 159095839 159095967 -68428611 - L1M4 LINE L1 -3062 3084 2956 360 322 69 17 chr3 159096003 159096236 -68428342 - L1M4 LINE L1 -3319 2827 2583 2794 143 44 12 chr3 159097168 159097670 -68426908 - L1MC2 LINE L1 -10 6334 5817 352 231 0 0 chr3 159097830 159097895 -68426683 + AluJ/FRAM SINE Alu 226 290 -12 2709 212 27 26 chr3 159100310 159100974 -68423604 - L1M4 LINE L1 -1198 4948 4284 2686 197 41 91 chr3 159100999 159101806 -68422772 - L1MCb LINE L1 -5265 780 14 1239 199 57 24 chr3 159101839 159102135 -68422443 - L1ME3A LINE L1 -67 6103 5798 3124 146 35 18 chr3 159102137 159102652 -68421926 + Tigger7 DNA MER2_type 2 525 -208 332 185 0 0 chr3 159102646 159102700 -68421878 + Tigger7 DNA MER2_type 2396 2449 -38 * 1490 261 17 27 chr3 159102731 159103145 -68421433 - L1ME3A LINE L1 -385 5785 5376 582 124 0 34 chr3 159103169 159103258 -68421320 + FLAM_A SINE Alu 39 124 -18 1590 272 40 20 chr3 159103304 159104006 -68420572 - L1ME3A LINE L1 -841 5305 4590 35 24 0 0 chr3 159104156 159104198 -68420380 + AT_rich Low_complexity Low_complexity 1 42 0 388 286 74 48 chr3 159104198 159104576 -68420002 - HAL1b LINE L1 -900 448 61 249 219 31 16 chr3 159105504 159105568 -68419010 - L1M3 LINE L1 -627 5553 5489 6287 166 27 104 chr3 159105611 159107124 -68417454 - MER52A LTR ERV1 -352 1403 8 228 254 109 52 chr3 159107308 159107501 -68417077 - L1M3 LINE L1 -2398 3748 3545 284 282 139 16 chr3 159107605 159107967 -68416611 - L1M3 LINE L1 -3124 3022 2604 1045 186 15 29 chr3 159107973 159108177 -68416401 + MER3 DNA MER1_type 7 207 -2 404 285 55 47 chr3 159108251 159108525 -68416053 - HAL1 LINE L1 -1120 1387 1112 2286 213 18 41 chr3 159109067 159109574 -68415004 - LTR40a LTR ERVL 0 519 25 453 169 36 12 chr3 159110028 159110111 -68414467 + L2 LINE L2 3187 3271 -42 5013 173 34 9 chr3 159110136 159111204 -68413374 - L1MB7 LINE L1 0 6253 5161 270 340 29 0 chr3 159111974 159112077 -68412501 - MIR SINE MIR -20 242 137 411 296 28 34 chr3 159112507 159112686 -68411892 - L2 LINE L2 -29 3284 3107 286 297 181 19 chr3 159112818 159113138 -68411440 - L2 LINE L2 -457 2857 2486 349 283 30 0 chr3 159114360 159114459 -68410119 + MIR3 SINE MIR 58 159 -49 2062 194 36 0 chr3 159114954 159115393 -68409185 - L1MB7 LINE L1 -1225 4990 4536 1939 252 85 30 chr3 159115499 159116564 -68408014 - L1MB7 LINE L1 -3057 3158 2066 240 259 17 0 chr3 159117067 159117125 -68407453 - L2 LINE L2 -6 3307 3249 484 242 42 8 chr3 159117154 159117274 -68407304 - MIR SINE MIR -60 202 79 253 290 109 22 chr3 159117641 159117779 -68406799 - MIR SINE MIR -20 242 93 227 370 65 0 chr3 159118857 159118949 -68405629 + L2 LINE L2 3142 3239 -33 186 204 45 80 chr3 159120741 159120829 -68403749 + MIR SINE MIR 36 120 -142 374 216 102 0 chr3 159121349 159121479 -68403099 - MIR SINE MIR -33 229 80 258 286 152 11 chr3 159122024 159122179 -68402399 - MIR SINE MIR -61 147 5 225 0 0 0 chr3 159122830 159122855 -68401723 + (T)n Simple_repeat Simple_repeat 1 25 0 306 315 145 0 chr3 159123276 159123453 -68401125 + MIR SINE MIR 30 225 -37 191 213 0 21 chr3 159123816 159123863 -68400715 + L2 LINE L2 3268 3313 0 417 281 31 8 chr3 159123946 159124074 -68400504 - L2 LINE L2 -50 3263 3133 255 240 0 0 chr3 159125048 159125098 -68399480 + MER94 DNA DNA 2 51 -83 1985 145 20 10 chr3 159128703 159129007 -68395571 - AluJb SINE Alu -5 307 1 232 291 145 72 chr3 159129316 159129454 -68395124 - MIR SINE MIR -58 150 41 544 245 49 0 chr3 159130267 159130410 -68394168 + MER117 DNA MER1_type 38 187 -10 483 238 40 94 chr3 159130450 159130652 -68393926 - MIR3 SINE MIR -15 193 3 523 296 0 0 chr3 159131468 159131600 -68392978 - MIR SINE MIR -67 195 64 333 0 0 0 chr3 159131891 159131928 -68392650 + (TG)n Simple_repeat Simple_repeat 2 38 0 972 229 60 28 chr3 159131934 159132218 -68392360 + Tigger3(Golem) DNA MER2_type 1 293 -2736 470 70 106 4 chr3 159132221 159132509 -68392069 + (TA)n Simple_repeat Simple_repeat 1 317 0 21 0 0 0 chr3 159132509 159132530 -68392048 + AT_rich Low_complexity Low_complexity 1 21 0 522 97 46 23 chr3 159132530 159132705 -68391873 + (TA)n Simple_repeat Simple_repeat 2 180 0 9316 42 1 0 chr3 159132827 159133941 -68390637 - L1P LINE L1 -1014 5132 4018 2514 235 42 45 chr3 159134289 159134939 -68389639 + MER89-int LTR ERV1 2549 3196 -3605 602 149 105 11 chr3 159134941 159135155 -68389423 + L1MC2 LINE L1 5719 5898 -446 547 116 49 16 chr3 159135260 159135449 -68389129 + (TA)n Simple_repeat Simple_repeat 1 182 -233 35 0 0 0 chr3 159135449 159135484 -68389094 + AT_rich Low_complexity Low_complexity 1 35 0 547 116 49 16 chr3 159135484 159135662 -68388916 + (TA)n Simple_repeat Simple_repeat 182 415 0 37 0 0 0 chr3 159135662 159135699 -68388879 + AT_rich Low_complexity Low_complexity 1 37 0 473 63 57 50 chr3 159135699 159135858 -68388720 + (TTATA)n Simple_repeat Simple_repeat 5 164 0 62 14 0 0 chr3 159135858 159135927 -68388651 + AT_rich Low_complexity Low_complexity 1 69 0 973 229 46 29 chr3 159135927 159136167 -68388411 - Tigger3(Golem) DNA MER2_type -2785 244 1 189 74 0 0 chr3 159136174 159136201 -68388377 + (CA)n Simple_repeat Simple_repeat 2 28 0 23422 43 13 3 chr3 159136434 159139296 -68385282 + L1P LINE L1 222 3112 -3034 607 72 81 4 chr3 159139408 159139856 -68384722 + (TA)n Simple_repeat Simple_repeat 1 482 0 554 57 92 0 chr3 159139877 159140149 -68384429 + (TA)n Simple_repeat Simple_repeat 1 296 0 1881 115 80 0 chr3 159140150 159140438 -68384140 - Tigger3b DNA MER2_type -574 657 347 2234 98 0 7 chr3 159140457 159140744 -68383834 - AluSg1 SINE Alu -24 285 1 3366 114 49 18 chr3 159140745 159141295 -68383283 + Tigger3b DNA MER2_type 664 1230 -2 294 29 0 0 chr3 159141295 159141330 -68383248 + (TG)n Simple_repeat Simple_repeat 2 36 0 1679 158 49 0 chr3 159141378 159141662 -68382916 - MLT2D LTR ERVL -116 298 1 202 255 0 0 chr3 159143465 159143516 -68381062 - L2 LINE L2 -15 3298 3248 558 299 40 13 chr3 159145409 159145633 -68378945 - MIR SINE MIR -20 242 13 536 170 12 10 chr3 159147013 159147137 -68377441 + L1MA6 LINE L1 5924 6043 -254 366 232 165 63 chr3 159148239 159148476 -68376102 + MIR SINE MIR 1 261 -1 646 232 40 11 chr3 159148487 159148664 -68375914 + L1MC5 LINE L1 7732 7913 -48 186 103 0 0 chr3 159148689 159148718 -68375860 + (TA)n Simple_repeat Simple_repeat 2 30 0 28 29 0 0 chr3 159148806 159148841 -68375737 + AT_rich Low_complexity Low_complexity 1 35 0 322 201 112 56 chr3 159148841 159149020 -68375558 - MER113 DNA MER1_type? -329 192 4 609 271 58 28 chr3 159149122 159149354 -68375224 + MIR SINE MIR 2 250 -12 557 279 53 41 chr3 159149726 159149970 -68374608 - MIR SINE MIR -2 260 14 323 287 116 33 chr3 159150684 159150865 -68373713 - MARNA DNA Mariner -82 504 309 399 41 0 0 chr3 159150878 159150927 -68373651 + (TG)n Simple_repeat Simple_repeat 2 50 0 741 221 158 83 chr3 159150939 159151350 -68373228 - MLT1H LTR MaLR -1 548 107 216 0 0 0 chr3 159151362 159151386 -68373192 + (T)n Simple_repeat Simple_repeat 1 24 0 1579 93 10 0 chr3 159151423 159151627 -68372951 + AluSq SINE Alu 35 240 -73 1595 124 0 13 chr3 159151846 159152072 -68372506 - AluSg/x SINE Alu -22 290 68 208 238 111 16 chr3 159152259 159152322 -68372256 - L2 LINE L2 -16 3256 3188 348 305 8 31 chr3 159152593 159152721 -68371857 - L2 LINE L2 -176 3096 2972 453 261 109 74 chr3 159153117 159153347 -68371231 + MIR SINE MIR 8 245 -17 456 19 0 0 chr3 159153532 159153585 -68370993 + (TG)n Simple_repeat Simple_repeat 1 53 0 208 275 38 61 chr3 159154323 159154454 -68370124 - L2 LINE L2 -3 3269 3142 286 246 0 31 chr3 159154907 159154972 -68369606 - MER81 DNA DNA -51 63 1 413 329 27 0 chr3 159155179 159155325 -68369253 + MIR SINE MIR 94 243 -19 610 259 222 37 chr3 159155838 159156217 -68368361 + LTR16A1 LTR ERVL 8 456 -1 672 345 47 14 chr3 159156276 159156638 -68367940 + HERV16 LTR ERVL 75 448 -4548 309 256 89 0 chr3 159156713 159156803 -68367775 + HERV16 LTR ERVL 559 656 -4340 1702 310 80 6 chr3 159157067 159157703 -68366875 + HERV16 LTR ERVL 896 1578 -3418 1854 282 55 59 chr3 159157749 159158508 -68366070 + HERV16 LTR ERVL 1685 2440 -2556 1642 325 71 4 chr3 159158891 159159600 -68364978 + HERV16 LTR ERVL 2437 3087 -1909 409 333 8 0 chr3 159159673 159159790 -68364788 - MER91A DNA MER1_type -65 131 14 208 350 57 24 chr3 159159949 159160072 -68364506 - L2 LINE L2 0 3313 3187 563 309 55 59 chr3 159160944 159161507 -68363071 + L1ME4a LINE L1 5364 5924 -197 772 175 7 14 chr3 159161910 159162053 -68362525 - FLAM_C SINE Alu 0 143 2 234 0 0 0 chr3 159162156 159162182 -68362396 + (T)n Simple_repeat Simple_repeat 1 26 0 25 0 0 0 chr3 159162316 159162341 -68362237 + AT_rich Low_complexity Low_complexity 1 25 0 495 340 65 12 chr3 159162404 159162651 -68361927 - MIR SINE MIR 0 262 3 1855 154 0 62 chr3 159162962 159163214 -68361364 - L1MA8 LINE L1 -8 6283 6060 2100 129 10 3 chr3 159163214 159163517 -68361061 - AluSg SINE Alu -5 305 1 1855 154 0 62 chr3 159163517 159163635 -68360943 - L1MA8 LINE L1 -231 6060 5936 2210 118 3 0 chr3 159163708 159164013 -68360565 - AluSx SINE Alu -4 308 3 1190 243 114 3 chr3 159164021 159164221 -68360357 - L1MD2 LINE L1 -1 6358 6182 261 83 0 0 chr3 159164221 159164257 -68360321 + (TG)n Simple_repeat Simple_repeat 2 37 0 1190 243 114 3 chr3 159164257 159164381 -68360197 - L1MD2 LINE L1 -177 6182 5998 450 246 94 0 chr3 159164647 159164785 -68359793 - MER103 DNA DNA -12 154 4 4472 248 98 32 chr3 159165041 159166255 -68358323 + L1ME2 LINE L1 2652 4046 -2100 2470 63 0 7 chr3 159166255 159166554 -68358024 + AluY SINE Alu 1 297 -14 4472 248 98 32 chr3 159166554 159167315 -68357263 + L1ME2 LINE L1 4046 4756 -1390 222 91 0 0 chr3 159167315 159167348 -68357230 + (TTTTA)n Simple_repeat Simple_repeat 1 33 0 18785 36 1 3 chr3 159167348 159172083 -68352495 - L1PA3 LINE L1 -24 6131 1 1121 265 107 23 chr3 159172084 159173102 -68351476 + L1ME2 LINE L1 4749 5876 -288 988 241 63 73 chr3 159173129 159173713 -68350865 - L2 LINE L2 -20 3293 2710 595 163 0 0 chr3 159173716 159173808 -68350770 + L1MD2 LINE L1 5668 5759 -483 407 160 151 19 chr3 159173812 159173918 -68350660 + FLAM_A SINE Alu 22 141 -1 350 150 88 157 chr3 159173920 159173988 -68350590 + L1MD2 LINE L1 5760 5814 -545 1567 207 3 27 chr3 159173988 159174283 -68350295 - AluJo SINE Alu -24 288 1 350 150 88 157 chr3 159174283 159174361 -68350217 + L1MD2 LINE L1 5814 5896 -463 713 208 0 0 chr3 159174493 159174613 -68349965 - Tigger3b DNA MER2_type 0 1241 1122 19536 182 11 4 chr3 159174613 159179462 -68345116 + L1PA15 LINE L1 1969 6862 -6 2395 89 3 19 chr3 159179463 159179779 -68344799 + AluSp SINE Alu 1 311 -2 3881 122 91 20 chr3 159179782 159180498 -68344080 - Tigger3b DNA MER2_type -463 768 2 409 274 33 20 chr3 159180566 159180719 -68343859 - MIR SINE MIR -68 194 40 402 57 0 0 chr3 159181810 159181863 -68342715 + (TG)n Simple_repeat Simple_repeat 2 54 0 198 71 0 0 chr3 159182026 159182054 -68342524 + (CCAA)n Simple_repeat Simple_repeat 1 28 0 383 325 32 0 chr3 159183015 159183138 -68341440 - L2 LINE L2 -5 3308 3182 878 229 36 14 chr3 159183183 159183406 -68341172 - MIR SINE MIR -18 244 17 249 265 29 0 chr3 159184103 159184171 -68340407 - MIR SINE MIR -114 148 79 261 0 0 0 chr3 159184241 159184270 -68340308 + (A)n Simple_repeat Simple_repeat 1 29 0 673 235 237 42 chr3 159184816 159185267 -68339311 - L2 LINE L2 -450 2864 2326 246 336 67 0 chr3 159185275 159185394 -68339184 - MIR SINE MIR -77 185 59 4787 90 3 2 chr3 159186175 159186774 -68337804 - MER4A LTR ERV1 0 600 1 348 64 0 0 chr3 159187266 159187313 -68337265 + (CA)n Simple_repeat Simple_repeat 2 48 0 2062 205 109 22 chr3 159187337 159187972 -68336606 - L1MC5 LINE L1 -391 7570 6881 385 299 21 73 chr3 159188036 159188460 -68336118 + L1MC4a LINE L1 6305 6706 -1102 1882 168 0 0 chr3 159188637 159188928 -68335650 + AluJo SINE Alu 1 291 -21 299 210 150 20 chr3 159188937 159189037 -68335541 + L1MC5 LINE L1 6746 6858 -1103 2988 50 41 0 chr3 159190229 159190593 -68333985 - L1PA6 LINE L1 -1 6153 5775 1073 241 35 9 chr3 159190732 159191080 -68333498 + L1M4 LINE L1 4883 5239 -907 * 1345 202 41 6 chr3 159191072 159191414 -68333164 + L1M4 LINE L1 5009 5362 -784 * 27595 34 2 1 chr3 159191406 159195472 -68329106 + L1PA4 LINE L1 2086 6155 0 1711 85 55 0 chr3 159195487 159195722 -68328856 + Tigger1 DNA MER2_type 694 941 -1477 364 227 8 67 chr3 159195895 159196014 -68328564 + MLT1K LTR MaLR 79 190 -398 4123 112 27 58 chr3 159196017 159196190 -68328388 + Tigger1 DNA MER2_type 942 1119 -1299 1767 123 0 8 chr3 159196190 159196442 -68328136 - AluSg SINE Alu 0 310 61 4123 112 27 58 chr3 159196442 159196517 -68328061 + Tigger1 DNA MER2_type 1119 1195 -1223 2174 115 0 13 chr3 159196517 159196830 -68327748 + AluSx SINE Alu 1 309 -3 4123 112 27 58 chr3 159196830 159197283 -68327295 + Tigger1 DNA MER2_type 1195 1622 -796 852 207 64 5 chr3 159197256 159197444 -68327134 + MER115 DNA AcHobo 495 693 0 * 530 236 79 45 chr3 159198095 159198273 -68326305 + MLT1K LTR MaLR 79 262 -326 566 234 11 46 chr3 159198335 159198510 -68326068 + MLT1K LTR MaLR 414 582 -6 329 257 37 9 chr3 159198511 159198620 -68325958 - MIR3 SINE MIR -53 155 44 476 273 180 6 chr3 159199211 159199394 -68325184 + MIR SINE MIR 36 250 -12 253 394 24 0 chr3 159199780 159199907 -68324671 - MIR3 SINE MIR -76 132 3 182 62 31 0 chr3 159199997 159200029 -68324549 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 305 251 17 51 chr3 159201698 159201873 -68322705 + (CA)n Simple_repeat Simple_repeat 2 170 0 669 259 98 5 chr3 159202601 159202806 -68321772 + MIR SINE MIR 20 243 -19 207 69 0 0 chr3 159203535 159203564 -68321014 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 243 233 68 27 chr3 159203582 159203655 -68320923 - L2 LINE L2 -43 3270 3195 189 239 282 0 chr3 159203666 159203783 -68320795 - MIR3 SINE MIR -52 156 7 222 37 0 0 chr3 159204031 159204058 -68320520 + (TAA)n Simple_repeat Simple_repeat 1 27 0 198 243 0 0 chr3 159204123 159204160 -68320418 - L2 LINE L2 -211 3061 3025 2672 232 128 11 chr3 159204531 159206280 -68318298 + L1MA9 LINE L1 1233 2946 -4161 * 15962 165 20 21 chr3 159206276 159208666 -68315912 + L1MA9 LINE L1 3166 5555 -1717 1649 173 31 21 chr3 159208666 159208955 -68315623 + AluJb SINE Alu 1 292 -20 15962 165 20 21 chr3 159208955 159210666 -68313912 + L1MA9 LINE L1 5555 7266 -6 322 171 0 14 chr3 159210702 159210772 -68313806 + L1ME4a LINE L1 6051 6119 -2 554 164 134 8 chr3 159210997 159211131 -68313447 - MER20 DNA MER1_type -67 152 2 720 293 105 31 chr3 159211131 159211571 -68313007 + L1M4 LINE L1 5371 5855 -323 2133 124 13 0 chr3 159212792 159213098 -68311480 + AluSg SINE Alu 1 310 0 2104 135 0 3 chr3 159213212 159213509 -68311069 + AluJb SINE Alu 1 296 -16 34518 76 6 2 chr3 159213519 159218028 -68306550 + L1P LINE L1 11 4534 -1612 10589 62 27 4 chr3 159218128 159219478 -68305100 - L1P LINE L1 -4765 1381 2 1704 103 7 52 chr3 159219478 159219749 -68304829 - Tigger1 DNA MER2_type -1708 710 452 1295 250 73 29 chr3 159220479 159220656 -68303922 + MLT1J LTR MaLR 4 172 -339 722 231 148 0 chr3 159220656 159220838 -68303740 + MER63A DNA MER1_type 2 210 0 1295 250 73 29 chr3 159220838 159221112 -68303466 + MLT1J LTR MaLR 172 475 -36 343 344 8 8 chr3 159221679 159221804 -68302774 + L2 LINE L2 3136 3260 -12 261 0 0 0 chr3 159221833 159221862 -68302716 + (T)n Simple_repeat Simple_repeat 1 29 0 636 209 13 70 chr3 159221954 159222112 -68302466 + MER20 DNA MER1_type 30 178 -41 262 360 9 0 chr3 159222544 159222655 -68301923 + L2 LINE L2 3149 3260 -12 252 0 0 0 chr3 159222685 159222713 -68301865 + (T)n Simple_repeat Simple_repeat 1 28 0 888 143 17 143 chr3 159222785 159223015 -68301563 + MER20 DNA MER1_type 19 219 0 529 277 130 44 chr3 159223510 159223871 -68300707 - MLT1J LTR MaLR -10 501 110 259 119 0 48 chr3 159223846 159223888 -68300690 - LTR67 LTR ERVL -419 138 99 * 255 229 205 41 chr3 159224793 159224915 -68299663 - MIR SINE MIR -11 251 110 745 218 90 0 chr3 159224934 159225122 -68299456 + MIR SINE MIR 44 248 -14 332 231 48 39 chr3 159225260 159225364 -68299214 - MIR SINE MIR -71 137 33 188 262 0 0 chr3 159226393 159226435 -68298143 + L3b LINE CR1 1532 1573 -10 3424 226 47 28 chr3 159230153 159230410 -68294168 + L1ME3 LINE L1 3900 4151 -2011 2304 147 3 9 chr3 159230410 159230756 -68293822 + MER2 DNA MER2_type 1 344 0 3424 226 47 28 chr3 159230756 159232668 -68291910 + L1ME3 LINE L1 4151 6158 -4 647 268 116 0 chr3 159232748 159232938 -68291640 + MIR SINE MIR 23 234 -28 878 217 32 31 chr3 159232964 159233230 -68291348 - L1P LINE L1 -747 5408 5137 5279 26 3 0 chr3 159233312 159233891 -68290687 - L1PA4 LINE L1 -4 6151 5571 3110 224 27 25 chr3 159233914 159234806 -68289772 - L1P LINE L1 -1022 5124 4280 226 254 90 41 chr3 159335988 159336110 -68188468 - MIR3 SINE MIR -70 138 11 22 106 0 0 chr3 159336294 159336379 -68188199 + AT_rich Low_complexity Low_complexity 1 85 0 243 0 0 0 chr3 159336398 159336425 -68188153 + (TG)n Simple_repeat Simple_repeat 2 28 0 390 271 147 6 chr3 159336551 159336721 -68187857 + MIR SINE MIR 8 201 -61 198 0 0 0 chr3 159337234 159337256 -68187322 + (CAAAAA)n Simple_repeat Simple_repeat 1 22 0 546 117 19 10 chr3 159337658 159337761 -68186817 + GA-rich Low_complexity Low_complexity 1 104 0 431 249 146 12 chr3 159337837 159338002 -68186576 + MIR SINE MIR 57 243 -19 198 103 0 0 chr3 159338019 159338048 -68186530 + (TTC)n Simple_repeat Simple_repeat 3 31 0 620 271 93 31 chr3 159338163 159338388 -68186190 + MIR SINE MIR 24 262 0 387 263 30 0 chr3 159338633 159338732 -68185846 + L2 LINE L2 3194 3295 -18 1931 104 0 0 chr3 159338785 159339036 -68185542 + AluSx SINE Alu 58 308 -4 3716 202 54 54 chr3 159339189 159340182 -68184396 - L1MC4a LINE L1 0 7808 6816 203 221 53 53 chr3 159340252 159340347 -68184231 - MIR3 SINE MIR -111 97 3 373 213 28 35 chr3 159340445 159340586 -68183992 + L1MC4 LINE L1 7498 7637 -405 1077 140 12 12 chr3 159340603 159340774 -68183804 + MLT1C LTR MaLR 1 171 -296 237 169 39 13 chr3 159340881 159340958 -68183620 + (TTA)n Simple_repeat Simple_repeat 1 79 0 716 227 113 4 chr3 159341003 159341232 -68183346 + L1MC4 LINE L1 7789 8042 0 376 269 90 22 chr3 159341456 159341590 -68182988 + MIR SINE MIR 48 190 -72 1560 191 47 16 chr3 159341975 159342357 -68182221 + L1ME1 LINE L1 4904 5297 -849 1973 185 51 22 chr3 159342459 159342870 -68181708 + L1ME1 LINE L1 5509 5931 -235 418 280 0 0 chr3 159343061 159343168 -68181410 + MIR SINE MIR 47 153 -109 276 246 91 36 chr3 159343440 159343550 -68181028 + MIR3 SINE MIR 85 200 -8 291 336 89 0 chr3 159344676 159344822 -68179756 + MIR SINE MIR 89 247 -15 827 220 64 0 chr3 159344920 159345093 -68179485 + MER5A DNA MER1_type 1 184 -5 390 269 9 9 chr3 159345295 159345403 -68179175 - MLT1L LTR MaLR -2 613 506 401 307 47 0 chr3 159345582 159345709 -68178869 - MLT1L LTR MaLR -340 275 143 2360 157 78 5 chr3 159345718 159346152 -68178426 + MLT1C LTR MaLR 1 466 -1 238 221 107 2 chr3 159346288 159346355 -68178223 + MIR SINE MIR 24 97 -111 216 152 22 22 chr3 159346569 159346615 -68177963 + GA-rich Low_complexity Low_complexity 2 47 0 23 54 0 0 chr3 159346927 159346964 -68177614 + AT_rich Low_complexity Low_complexity 1 37 0 690 191 68 0 chr3 159347213 159347360 -68177218 - MER53 DNA DNA -4 185 29 201 129 0 0 chr3 159347361 159347392 -68177186 + (ATG)n Simple_repeat Simple_repeat 1 31 0 204 40 0 0 chr3 159348442 159348467 -68176111 + (A)n Simple_repeat Simple_repeat 1 25 0 287 305 53 23 chr3 159348761 159348892 -68175686 + MIR SINE MIR 73 207 -55 204 67 0 0 chr3 159350161 159350191 -68174387 + (TG)n Simple_repeat Simple_repeat 1 30 0 616 273 11 5 chr3 159351312 159351499 -68173079 + MIR SINE MIR 63 250 -12 296 321 46 28 chr3 159351719 159351944 -68172634 + MIR SINE MIR 15 239 -23 211 282 59 24 chr3 159352081 159352166 -68172412 + MIR SINE MIR 20 107 -101 1145 119 13 0 chr3 159353108 159353267 -68171311 - MER20 DNA MER1_type -58 161 1 299 354 0 0 chr3 159353561 159353660 -68170918 + MIR SINE MIR 56 154 -108 264 292 0 22 chr3 159353709 159353798 -68170780 + L2 LINE L2 3182 3268 -4 260 322 164 6 chr3 159354432 159354615 -68169963 + MIR SINE MIR 19 230 -32 1341 259 107 6 chr3 159354897 159355372 -68169206 + LTR33A LTR ERVL 1 523 0 2210 166 30 38 chr3 159355974 159356401 -68168177 + MSTB LTR MaLR 2 425 -1 284 286 0 0 chr3 159356527 159356597 -68167981 + MIR SINE MIR 28 97 -165 368 251 12 34 chr3 159356958 159357320 -68167258 + CT-rich Low_complexity Low_complexity 1 353 0 4179 129 45 9 chr3 159357876 159358550 -68166028 - MER39 LTR ERV1 -2 705 8 274 259 37 56 chr3 159359112 159359220 -68165358 + MER5A DNA MER1_type 46 151 -38 509 268 49 6 chr3 159359416 159359599 -68164979 - MIR SINE MIR -70 192 2 478 192 96 0 chr3 159360289 159360393 -68164185 + MER103 DNA DNA 53 166 0 688 299 9 22 chr3 159361524 159361755 -68162823 - MIR SINE MIR -8 254 27 213 195 24 49 chr3 159362094 159362176 -68162402 + (CAAA)n Simple_repeat Simple_repeat 3 82 0 1024 278 22 49 chr3 159364573 159364983 -68159595 + L1MC/D LINE L1 5255 5653 -2155 330 285 22 0 chr3 159365766 159365877 -68158701 + L1MC/D LINE L1 5697 5818 -303 331 302 31 0 chr3 159366442 159366538 -68158040 + L2 LINE L2 3134 3232 -40 344 326 48 7 chr3 159366648 159366795 -68157783 + L2 LINE L2 3119 3271 -1 784 210 122 41 chr3 159367263 159367534 -68157044 + L1MC4 LINE L1 7738 8030 -12 1569 210 60 25 chr3 159367812 159368233 -68156345 - L1MB7 LINE L1 -17 6167 5734 1903 106 0 109 chr3 159368624 159368751 -68155827 + AluSq SINE Alu 1 140 -163 279 0 0 0 chr3 159368751 159368782 -68155796 + (TG)n Simple_repeat Simple_repeat 2 32 0 1903 106 0 109 chr3 159368782 159368994 -68155584 + AluSq SINE Alu 140 303 0 264 30 0 0 chr3 159369174 159369207 -68155371 + (TG)n Simple_repeat Simple_repeat 1 33 0 348 225 123 36 chr3 159370999 159371137 -68153441 + Charlie8 DNA MER1_type 105 254 -2163 360 0 0 0 chr3 159371909 159371949 -68152629 + (CA)n Simple_repeat Simple_repeat 2 41 0 2036 161 3 0 chr3 159372179 159372483 -68152095 - AluJb SINE Alu -7 305 1 2228 132 0 0 chr3 159372532 159372836 -68151742 - AluY SINE Alu -7 304 1 2150 95 25 0 chr3 159373530 159373814 -68150764 + AluSx SINE Alu 3 293 -19 313 263 167 9 chr3 159374152 159374266 -68150312 + MER5A DNA MER1_type 1 132 -57 364 330 15 53 chr3 159374737 159374922 -68149656 - MIR SINE MIR -62 146 15 346 254 15 45 chr3 159375414 159375548 -68149030 + MER103 DNA DNA 6 135 -31 190 237 52 118 chr3 159376378 159376513 -68148065 + L2 LINE L2 3172 3297 -16 387 200 0 0 chr3 159376547 159376622 -68147956 + MER5A DNA MER1_type 1 75 -114 346 147 0 44 chr3 159376622 159376690 -68147888 + Alu SINE Alu 238 302 0 388 235 78 0 chr3 159376695 159376810 -68147768 + MER5A DNA MER1_type 61 184 -5 233 275 168 47 chr3 159376851 159377000 -68147578 + MIR SINE MIR 57 223 -39 225 327 62 9 chr3 159377483 159377596 -68146982 - MIR3 SINE MIR -12 196 78 312 70 0 0 chr3 159377997 159378040 -68146538 + (CA)n Simple_repeat Simple_repeat 2 44 0 582 86 0 0 chr3 159379008 159379089 -68145489 + (TCTA)n Simple_repeat Simple_repeat 1 81 0 220 284 97 75 chr3 159379241 159379375 -68145203 + MIR3 SINE MIR 12 148 -60 983 268 44 78 chr3 159379380 159379877 -68144701 + L2 LINE L2 2231 2710 -604 1192 186 0 35 chr3 159380010 159380236 -68144342 - AluJo SINE Alu -94 218 1 594 265 221 9 chr3 159380253 159380570 -68144008 + L2 LINE L2 2927 3310 -3 1665 227 129 30 chr3 159381631 159382172 -68142406 + MLT1G1 LTR MaLR 1 595 0 334 240 0 0 chr3 159384006 159384081 -68140497 - MIR SINE MIR -111 151 77 2590 62 7 0 chr3 159384389 159384698 -68139880 + AluY SINE Alu 1 311 0 303 286 236 0 chr3 159385477 159385617 -68138961 - MIR SINE MIR -11 251 79 491 286 75 5 chr3 159386298 159386497 -68138081 - MIR SINE MIR -43 219 7 1519 271 89 60 chr3 159387395 159388215 -68136363 + L1MEd LINE L1 223 1066 -5053 328 233 57 93 chr3 159388219 159388412 -68136166 + HAL1 LINE L1 1424 1609 -898 887 217 33 5 chr3 159388849 159389033 -68135545 - MER5A DNA MER1_type 0 189 1 204 280 13 27 chr3 159389191 159389266 -68135312 + MIR SINE MIR 168 241 -21 250 250 132 21 chr3 159390740 159390884 -68133694 - L1MC4a LINE L1 -1785 6023 5864 11230 135 17 66 chr3 159390902 159394252 -68130326 - L1MA3 LINE L1 0 7724 4549 239 176 0 0 chr3 159394474 159394525 -68130053 - L1MB5 LINE L1 0 6174 6124 2124 188 55 12 chr3 159394626 159395116 -68129462 - L1MB5 LINE L1 -192 5982 5472 2680 94 17 3 chr3 159395131 159395492 -68129086 - L1PB3 LINE L1 -7 6147 5782 354 138 0 0 chr3 159395498 159395556 -68129022 + (TA)n Simple_repeat Simple_repeat 1 58 0 1374 117 5 0 chr3 159395558 159395755 -68128823 - L1PB3 LINE L1 -363 5791 5594 5168 194 9 10 chr3 159395864 159396984 -68127594 - L1PB3 LINE L1 -903 5243 4125 18333 167 92 10 chr3 159396987 159401210 -68123368 - L1MA3 LINE L1 -2990 4575 8 543 266 61 37 chr3 159401213 159401427 -68123151 - L1MC4a LINE L1 -1929 5879 5661 470 260 37 44 chr3 159401461 159401734 -68122844 - L1MC4a LINE L1 -2274 5534 5264 2553 102 128 10 chr3 159401735 159402118 -68122460 + MSTA LTR MaLR 1 428 0 195 129 0 0 chr3 159404111 159404142 -68120436 + (A)n Simple_repeat Simple_repeat 1 31 0 1416 236 33 31 chr3 159404199 159404686 -68119892 - HAL1 LINE L1 0 2507 2020 267 204 0 0 chr3 159404705 159404759 -68119819 - MER116 DNA Mariner -26 54 1 21 0 0 0 chr3 159405033 159405054 -68119524 + AT_rich Low_complexity Low_complexity 1 21 0 1878 149 4 0 chr3 159405054 159405329 -68119249 - AluSx SINE Alu -17 295 20 285 306 54 54 chr3 159405377 159405619 -68118959 - HAL1 LINE L1 -2169 338 97 670 180 0 7 chr3 159405883 159406022 -68118556 + LTR37A LTR ERV1 289 426 0 211 173 19 19 chr3 159406450 159406502 -68118076 + (TTTG)n Simple_repeat Simple_repeat 2 53 0 339 250 78 91 chr3 159406593 159406825 -68117753 + MER31-int LTR ERV1 1049 1277 -3659 470 205 31 62 chr3 159406889 159407050 -68117528 + MER31-int LTR ERV1 1291 1446 -3490 735 192 47 61 chr3 159407634 159407848 -68116730 - Charlie1 DNA MER1_type 0 2761 2551 242 241 0 0 chr3 159407821 159407875 -68116703 - Charlie1 DNA MER1_type -2655 106 53 * 481 286 18 0 chr3 159408064 159408176 -68116402 + MER81 DNA DNA 1 114 0 283 330 0 10 chr3 159408269 159408366 -68116212 + GA-rich Low_complexity Low_complexity 1 96 0 216 256 134 24 chr3 159409061 159409143 -68115435 + MER5B DNA MER1_type 1 91 -87 21 0 0 0 chr3 159409447 159409468 -68115110 + AT_rich Low_complexity Low_complexity 1 21 0 240 318 129 28 chr3 159409743 159409891 -68114687 - L1 LINE L1 -1909 4237 4105 2198 125 0 3 chr3 159409891 159410204 -68114374 - AluSx SINE Alu 0 312 1 240 318 129 28 chr3 159410204 159410628 -68113950 - L1 LINE L1 -2041 4105 3607 1461 315 57 22 chr3 159410665 159411624 -68112954 + L1ME3A LINE L1 4176 5168 -978 347 338 115 32 chr3 159411833 159412356 -68112222 + L1ME3A LINE L1 5372 5937 -233 360 0 0 0 chr3 159412449 159412489 -68112089 + (CA)n Simple_repeat Simple_repeat 2 41 0 450 300 155 22 chr3 159412513 159412926 -68111652 - L1 LINE L1 -2567 3579 3112 2380 65 3 3 chr3 159412936 159413249 -68111329 - AluY SINE Alu 0 313 1 2121 211 31 16 chr3 159413249 159413760 -68110818 - L1 LINE L1 -857 5289 4771 1080 216 7 4 chr3 159413760 159414056 -68110522 - L1MC/D LINE L1 -746 5400 5204 231 204 0 0 chr3 159415583 159415682 -68108896 + (TTG)n Simple_repeat Simple_repeat 1 99 0 1268 204 67 20 chr3 159415684 159415983 -68108595 - MLT1C LTR MaLR -45 422 110 1003 194 18 16 chr3 159416381 159416797 -68107781 - MLT1F1 LTR MaLR -2 565 1 1862 123 7 76 chr3 159417042 159417368 -68107210 + AluSq SINE Alu 5 309 0 240 300 38 0 chr3 159417546 159417626 -68106952 + MIR SINE MIR 96 178 -84 614 214 102 37 chr3 159417626 159417813 -68106765 - MLT1K LTR MaLR -7 581 383 32 0 0 0 chr3 159418496 159418528 -68106050 + AT_rich Low_complexity Low_complexity 1 32 0 2240 208 64 47 chr3 159418530 159419274 -68105304 - L1MD3 LINE L1 -1 7994 7181 2138 121 0 0 chr3 159419466 159419755 -68104823 + AluSg SINE Alu 5 293 -17 34 42 0 0 chr3 159419898 159419946 -68104632 + AT_rich Low_complexity Low_complexity 1 48 0 897 277 127 41 chr3 159420565 159421077 -68103501 - LTR67 LTR ERVL 0 557 2 859 204 43 21 chr3 159422290 159422542 -68102036 - MIR SINE MIR -24 238 13 2175 113 10 0 chr3 159422685 159422987 -68101591 + AluSx SINE Alu 1 305 -7 291 303 91 23 chr3 159423606 159423738 -68100840 + L2 LINE L2 2628 2768 -546 297 320 30 0 chr3 159423950 159424050 -68100528 + L2 LINE L2 3211 3313 0 1005 178 17 69 chr3 159424223 159424454 -68100124 - MER20 DNA MER1_type 0 219 1 546 228 26 129 chr3 159424473 159424532 -68100046 - MER5B DNA MER1_type -5 173 109 1757 163 21 0 chr3 159424532 159424814 -68099764 + AluJb SINE Alu 1 288 -24 546 228 26 129 chr3 159424814 159424947 -68099631 - MER5B DNA MER1_type -69 109 1 312 316 11 0 chr3 159426446 159426541 -68098037 + MIR SINE MIR 49 144 -118 205 261 22 43 chr3 159427580 159427672 -68096906 - MIR SINE MIR -145 117 28 232 314 12 0 chr3 159428386 159428472 -68096106 + MIR SINE MIR 66 152 -110 2207 114 3 26 chr3 159429327 159429634 -68094944 + AluSq SINE Alu 1 300 -13 391 285 65 5 chr3 159429671 159429857 -68094721 - L1ME4a LINE L1 -130 5991 5795 757 206 18 18 chr3 159429864 159430034 -68094544 - MER45A DNA AcHobo -8 170 1 874 261 85 15 chr3 159430034 159430306 -68094272 - L1ME4a LINE L1 -316 5805 5515 360 89 0 0 chr3 159430657 159430702 -68093876 - AluS SINE Alu -230 73 29 186 287 35 35 chr3 159430752 159430839 -68093739 - MIR SINE MIR -84 124 38 337 278 40 15 chr3 159431473 159431623 -68092955 + MIR SINE MIR 5 162 -62 225 140 35 70 chr3 159431881 159431938 -68092640 + MLT1H1 LTR MaLR 270 324 -225 375 184 155 10 chr3 159431962 159432065 -68092513 + MLT1H1 LTR MaLR 438 555 0 222 281 146 0 chr3 159432067 159432156 -68092422 + MIR SINE MIR 160 261 -1 273 241 81 0 chr3 159433739 159433826 -68090752 - MIR SINE MIR -149 113 20 201 200 0 0 chr3 159434033 159434073 -68090505 - L2 LINE L2 -23 3249 3210 215 242 76 0 chr3 159434797 159434863 -68089715 - L2 LINE L2 -177 3095 3025 342 305 232 0 chr3 159434938 159435128 -68089450 - MIR SINE MIR -28 234 1 2245 120 3 0 chr3 159435515 159435816 -68088762 + AluSq SINE Alu 3 304 -9 311 60 20 0 chr3 159436299 159436349 -68088229 + (TA)n Simple_repeat Simple_repeat 2 52 0 230 248 95 19 chr3 159436451 159436556 -68088022 + L2 LINE L2 3201 3313 0 197 373 20 10 chr3 159436689 159436791 -68087787 - MIR SINE MIR -139 123 21 343 282 56 18 chr3 159436946 159437144 -68087434 + MIR SINE MIR 42 247 -15 523 224 81 31 chr3 159437394 159437555 -68087023 - MIR SINE MIR -71 191 23 517 284 14 0 chr3 159437600 159437741 -68086837 + MIR SINE MIR 120 262 0 216 268 97 57 chr3 159438096 159438324 -68086254 - L2 LINE L2 -410 2904 2668 305 169 127 0 chr3 159438357 159438428 -68086150 + MIR SINE MIR 183 262 0 290 282 137 0 chr3 159438748 159438872 -68085706 + MIR SINE MIR 118 258 -4 234 266 38 13 chr3 159438919 159438998 -68085580 - L1ME LINE L1 -439 5682 5602 24 0 0 0 chr3 159439023 159439047 -68085531 + AT_rich Low_complexity Low_complexity 1 24 0 238 271 17 0 chr3 159439190 159439249 -68085329 + GA-rich Low_complexity Low_complexity 4 63 0 705 234 28 0 chr3 159439389 159439534 -68085044 + MLT1G1 LTR MaLR 447 595 0 618 263 63 0 chr3 159439546 159439721 -68084857 - MIR SINE MIR -73 189 4 672 221 0 8 chr3 159439991 159440113 -68084465 + MER5A DNA MER1_type 2 122 -67 474 271 104 73 chr3 159440187 159440541 -68084037 - MLT1K LTR MaLR -8 580 216 180 237 0 0 chr3 159440907 159440945 -68083633 - MIR SINE MIR -109 153 116 646 282 44 35 chr3 159441146 159441373 -68083205 + MIR SINE MIR 28 256 -6 204 40 0 0 chr3 159441680 159441705 -68082873 + (TG)n Simple_repeat Simple_repeat 2 26 0 220 184 0 0 chr3 159441825 159441863 -68082715 + (TGGA)n Simple_repeat Simple_repeat 1 38 0 326 311 33 0 chr3 159441908 159441998 -68082580 + L1MC4a LINE L1 5811 5903 -1905 355 254 109 48 chr3 159443014 159443157 -68081421 + MER5A DNA MER1_type 1 157 -32 198 71 0 0 chr3 159443157 159443185 -68081393 + (CTG)n Simple_repeat Simple_repeat 2 29 0 355 254 109 48 chr3 159443185 159443206 -68081372 + MER5A DNA MER1_type 157 175 -14 769 223 47 88 chr3 159443270 159443544 -68081034 - Charlie8 DNA MER1_type -2143 274 12 575 267 92 73 chr3 159443656 159444098 -68080480 + L2 LINE L2 2779 3230 -42 436 344 61 9 chr3 159444133 159444345 -68080233 + L2 LINE L2 2971 3193 -79 184 313 54 48 chr3 159445066 159445232 -68079346 + L2 LINE L2 3017 3183 -89 343 222 222 9 chr3 159445361 159445469 -68079109 + MIR SINE MIR 123 253 -9 187 205 271 74 chr3 159446036 159446158 -68078420 + MIR3 SINE MIR 1 146 -62 181 264 0 38 chr3 159446197 159446250 -68078328 + L2 LINE L2 3215 3265 -7 559 272 77 0 chr3 159446829 159446998 -68077580 + MIR SINE MIR 53 234 -28 2121 75 0 3 chr3 159448548 159448856 -68075722 + AluSx SINE Alu 2 308 0 314 207 0 0 chr3 159448880 159448938 -68075640 + MER5A DNA MER1_type 132 189 0 583 245 139 18 chr3 159448941 159449214 -68075364 - L1MC4a LINE L1 -1829 5979 5674 271 242 32 0 chr3 159449438 159449500 -68075078 - MER91A DNA MER1_type -35 161 98 888 176 88 49 chr3 159449540 159449744 -68074834 - MER20 DNA MER1_type -4 215 4 229 196 22 0 chr3 159450175 159450221 -68074357 + L2 LINE L2 3203 3249 -23 428 283 62 0 chr3 159450565 159450710 -68073868 + MIR SINE MIR 29 182 -80 2032 141 3 0 chr3 159451630 159451936 -68072642 + AluSx SINE Alu 1 307 -5 735 244 39 22 chr3 159452801 159453030 -68071548 - L1MC5 LINE L1 -33 7928 7696 1812 193 144 12 chr3 159453030 159453439 -68071139 - MLT1D LTR MaLR -42 463 1 29 0 0 0 chr3 159453611 159453640 -68070938 + AT_rich Low_complexity Low_complexity 1 29 0 313 234 179 11 chr3 159453872 159454056 -68070522 - L1MC5 LINE L1 -262 7699 7485 23 0 0 0 chr3 159454062 159454085 -68070493 + AT_rich Low_complexity Low_complexity 1 23 0 1800 249 66 24 chr3 159454088 159454193 -68070385 - L1MC5 LINE L1 -1872 5936 5837 2581 39 0 3 chr3 159454193 159454501 -68070077 - AluY SINE Alu -4 307 1 1800 249 66 24 chr3 159454501 159454896 -68069682 - L1MC5 LINE L1 -1971 5837 5415 371 218 49 70 chr3 159456894 159457036 -68067542 - MIR SINE MIR -116 146 8 293 250 74 46 chr3 159457701 159457809 -68066769 + MIR SINE MIR 21 131 -131 189 289 52 41 chr3 159458172 159458269 -68066309 + L2 LINE L2 3183 3280 -33 379 275 99 21 chr3 159458319 159458461 -68066117 - L2 LINE L2 -4 3268 3116 296 344 23 16 chr3 159458599 159458727 -68065851 - L2 LINE L2 -466 2848 2720 953 214 60 49 chr3 159459233 159459679 -68064899 + MLT1H LTR MaLR 5 541 -8 473 345 19 24 chr3 159459956 159460162 -68064416 - MIR SINE MIR -57 205 1 407 273 67 7 chr3 159461175 159461325 -68063253 + MER5A DNA MER1_type 27 185 -4 230 56 28 0 chr3 159461722 159461758 -68062820 + (TCCC)n Simple_repeat Simple_repeat 4 40 0 602 201 30 0 chr3 159463124 159463366 -68061212 + GA-rich Low_complexity Low_complexity 1 249 0 377 303 42 30 chr3 159463786 159463951 -68060627 + L1MC/D LINE L1 5574 5740 -2068 690 90 0 0 chr3 159464033 159464122 -68060456 + AluSg/x SINE Alu 203 291 -19 298 196 18 0 chr3 159464152 159464208 -68060370 + MER103 DNA DNA 25 81 -85 247 226 0 0 chr3 159464228 159464281 -68060297 - L2 LINE L2 -3 3310 3258 291 278 73 26 chr3 159464359 159464550 -68060028 - L2 LINE L2 -217 3055 2856 1970 221 55 11 chr3 159464642 159465293 -68059285 - L1ME1 LINE L1 -5 6161 5341 1268 259 43 87 chr3 159465294 159465834 -68058744 - MER68 LTR ERV1 -30 532 17 695 182 25 0 chr3 159465848 159466007 -68058571 - L1ME1 LINE L1 -800 5346 5184 453 374 17 0 chr3 159466014 159466244 -68058334 - L2 LINE L2 -569 2745 2512 205 354 0 12 chr3 159466365 159466447 -68058131 + MIR3 SINE MIR 125 205 -3 294 278 26 17 chr3 159467429 159467544 -68057034 + L2 LINE L2 2920 3035 -278 299 247 34 11 chr3 159467573 159467662 -68056916 - MER69 DNA AcHobo -4 2522 2432 451 302 63 6 chr3 159467791 159467950 -68056628 - MIR3 SINE MIR -7 201 34 185 219 24 0 chr3 159470187 159470228 -68054350 + MIR SINE MIR 64 105 -103 808 269 64 16 chr3 159470466 159470715 -68053863 - MIR SINE MIR 0 262 2 295 271 57 43 chr3 159471099 159471239 -68053339 + MIR3 SINE MIR 15 156 -52 270 333 0 12 chr3 159471354 159471435 -68053143 + MIR SINE MIR 12 91 -171 222 171 0 0 chr3 159471460 159471501 -68053077 + (TTCA)n Simple_repeat Simple_repeat 4 44 0 350 278 142 35 chr3 159472471 159472640 -68051938 + MIR SINE MIR 20 206 -56 688 289 106 28 chr3 159473258 159473766 -68050812 - L1ME4a LINE L1 -1 6120 5573 45176 34 5 2 chr3 159473793 159479915 -68044663 - L1PA4 LINE L1 -3 6152 13 289 290 122 23 chr3 159480874 159481005 -68043573 + MER5A DNA MER1_type 22 165 -24 277 345 110 14 chr3 159480895 159481040 -68043538 - MER5A DNA MER1_type -30 159 1 * 512 242 13 13 chr3 159481151 159481300 -68043278 - MER103 DNA DNA 0 166 18 348 159 32 0 chr3 159482212 159482275 -68042303 - L2 LINE L2 -1 3312 3248 308 304 70 0 chr3 159482481 159482596 -68041982 + MIR SINE MIR 126 248 -14 664 274 25 20 chr3 159482635 159482839 -68041739 + MIR SINE MIR 6 210 -52 234 343 51 15 chr3 159483040 159483177 -68041401 + MIR SINE MIR 2 143 -119 535 243 233 11 chr3 159483310 159483499 -68041079 + MIR SINE MIR 32 262 0 452 307 121 9 chr3 159483783 159483998 -68040580 + MIR SINE MIR 24 262 0 362 229 60 0 chr3 159484360 159484443 -68040135 + MIR SINE MIR 64 151 -111 514 228 96 30 chr3 159484811 159484978 -68039600 + MER5B DNA MER1_type 1 178 0 434 208 288 8 chr3 159485043 159485168 -68039410 + MER5B DNA MER1_type 17 176 -2 21 0 0 0 chr3 159485181 159485202 -68039376 + AT_rich Low_complexity Low_complexity 1 21 0 2002 89 4 4 chr3 159485204 159485473 -68039105 + AluSx SINE Alu 1 269 -43 503 288 106 12 chr3 159485733 159485903 -68038675 - MIR SINE MIR -5 257 72 359 268 82 0 chr3 159486939 159487036 -68037542 - MIR SINE MIR -110 152 48 278 253 63 0 chr3 159488128 159488207 -68036371 + MLT1I LTR MaLR 324 407 -2 1132 263 86 8 chr3 159488207 159488591 -68035987 - L1M4 LINE L1 -2147 3999 3586 438 105 0 0 chr3 159488609 159488666 -68035912 - AluSx SINE Alu -21 290 234 1297 129 0 0 chr3 159488666 159488852 -68035726 - AluSx SINE Alu -126 186 1 310 261 73 18 chr3 159489089 159489254 -68035324 - L1M4 LINE L1 -2637 3509 3336 * 318 253 48 0 chr3 159489253 159489336 -68035242 + L1MC4 LINE L1 7344 7430 -612 324 277 11 0 chr3 159489365 159489459 -68035119 + MER94 DNA DNA 3 97 -37 633 245 112 36 chr3 159489533 159489811 -68034767 + L1MC4 LINE L1 7525 7823 -219 1034 229 36 93 chr3 159489815 159490321 -68034257 + L1ME1 LINE L1 5685 6161 -5 2040 114 19 7 chr3 159490345 159490653 -68033925 + AluSx SINE Alu 1 312 0 353 240 51 106 chr3 159490752 159490792 -68033786 + L1MC4 LINE L1 7800 7841 -201 2148 136 7 0 chr3 159490792 159491102 -68033476 + AluSx SINE Alu 1 312 0 353 240 51 106 chr3 159491102 159491315 -68033263 + L1MC4 LINE L1 7841 8039 -3 24 0 0 0 chr3 159491335 159491359 -68033219 + AT_rich Low_complexity Low_complexity 1 24 0 2301 243 56 32 chr3 159492461 159492788 -68031790 - L1M4 LINE L1 -2792 3354 3036 1093 98 4 183 chr3 159492788 159493023 -68031555 - 7SK RNA RNA 0 193 1 2301 243 56 32 chr3 159493023 159493565 -68031013 - L1M4 LINE L1 -3110 3036 2464 1138 207 26 46 chr3 159493565 159493869 -68030709 - L1MEd LINE L1 -3405 2724 2427 282 313 120 40 chr3 159493985 159494260 -68030318 - L1MEd LINE L1 -5291 828 532 1681 124 30 0 chr3 159494698 159494964 -68029614 + L1PA14 LINE L1 5886 6159 -2 676 306 213 27 chr3 159496944 159497711 -68026867 + HAL1 LINE L1 37 945 -1562 3515 265 38 21 chr3 159497750 159498177 -68026401 + HAL1 LINE L1 1180 1598 -909 757 215 70 65 chr3 159498177 159498391 -68026187 - MER58C DNA MER1_type 0 215 1 3515 265 38 21 chr3 159498391 159499177 -68025401 + HAL1 LINE L1 1598 2413 -94 28 48 0 0 chr3 159499208 159499250 -68025328 + AT_rich Low_complexity Low_complexity 1 42 0 325 213 38 0 chr3 159499413 159499493 -68025085 - L1ME4a LINE L1 -238 5883 5801 41684 40 28 1 chr3 159499531 159504610 -68019968 + L1P LINE L1 2 5215 -931 441 0 0 0 chr3 159505491 159505540 -68019038 + (TA)n Simple_repeat Simple_repeat 1 49 0 232 288 181 49 chr3 159505565 159506117 -68018461 - L1M4 LINE L1 -1807 4339 3715 335 234 7 22 chr3 159506249 159506349 -68018229 + MLT1H LTR MaLR 1 174 -375 1566 234 119 25 chr3 159506749 159507327 -68017251 + MLT1G LTR MaLR 1 590 0 236 354 0 12 chr3 159507327 159507409 -68017169 - MIR SINE MIR -135 127 47 2021 100 10 10 chr3 159508881 159509170 -68015408 - AluSq SINE Alu -14 299 11 564 274 57 6 chr3 159509873 159510030 -68014548 + MIR SINE MIR 36 200 -62 221 310 147 9 chr3 159511084 159511200 -68013378 + MER5A DNA MER1_type 56 187 -2 414 212 53 26 chr3 159511681 159511794 -68012784 + MER103 DNA DNA 8 123 -43 389 265 11 44 chr3 159512072 159512253 -68012325 + (CACCAT)n Simple_repeat Simple_repeat 5 179 0 248 376 0 20 chr3 159512280 159512429 -68012149 + (CCA)n Simple_repeat Simple_repeat 3 148 0 810 321 13 0 chr3 159513025 159513249 -68011329 - MIR SINE MIR -33 229 3 240 286 66 33 chr3 159514339 159514430 -68010148 + MIR SINE MIR 119 212 -50 256 176 68 0 chr3 159514507 159514581 -68009997 + Charlie4 DNA MER1_type 1791 1869 -92 6940 182 57 72 chr3 159514582 159516419 -68008159 - L1MC4a LINE L1 -11 7797 5989 237 250 52 52 chr3 159516918 159517014 -68007564 + MIR SINE MIR 95 190 -72 5665 187 35 6 chr3 159517121 159518224 -68006354 - L1MD2 LINE L1 0 6359 5228 1968 139 31 0 chr3 159518232 159518520 -68006058 - 7SLRNA srpRNA srpRNA -10 310 14 444 303 36 34 chr3 159519921 159520109 -68004469 - MIR SINE MIR -48 214 27 2347 94 3 0 chr3 159520460 159520758 -68003820 + AluSp SINE Alu 1 299 -14 367 380 120 0 chr3 159520763 159521037 -68003541 + L3 LINE CR1 199 505 -1072 8005 24 1 2 chr3 159521327 159522705 -68001873 + L1PA4 LINE L1 4760 6136 -19 4506 199 57 76 chr3 159522805 159524097 -68000481 - L1MC4 LINE L1 -416 7626 6359 187 338 106 45 chr3 159525250 159525448 -67999130 + L2 LINE L2 2882 3091 -181 995 197 89 32 chr3 159525646 159525907 -67998671 + MIR SINE MIR 3 257 -5 321 267 246 31 chr3 159527361 159527556 -67997022 + L2 LINE L2 3029 3265 -7 766 196 54 58 chr3 159528196 159528456 -67996122 - L1MC5 LINE L1 -245 7716 7458 577 217 8 8 chr3 159528547 159528676 -67995902 - L1MA10 LINE L1 -14 6320 6192 * 1475 201 69 4 chr3 159528662 159529016 -67995562 - L1ME1 LINE L1 -180 5982 5608 228 139 0 0 chr3 159529037 159529073 -67995505 - AluJo SINE Alu -9 293 258 546 128 0 0 chr3 159529075 159529153 -67995425 - Tigger3(Golem) DNA MER2_type -745 2284 2207 1188 204 62 13 chr3 159529161 159529387 -67995191 - AluJo SINE Alu -63 249 13 1465 199 38 0 chr3 159529398 159529689 -67994889 - L1ME1 LINE L1 -563 5603 5302 1918 161 17 0 chr3 159529690 159529988 -67994590 - AluSx SINE Alu -9 303 1 4430 128 18 7 chr3 159529988 159530706 -67993872 - L1MA4A LINE L1 -231 6072 5347 5727 123 47 35 chr3 159530706 159530770 -67993808 - Tigger3b DNA MER2_type -2021 1007 945 2117 124 0 7 chr3 159530770 159531060 -67993518 + AluSg SINE Alu 2 289 -21 518 18 35 53 chr3 159531069 159531183 -67993395 + (TA)n Simple_repeat Simple_repeat 1 112 0 5727 123 47 35 chr3 159531183 159531892 -67992686 - Tigger3b DNA MER2_type -2090 938 239 189 107 0 0 chr3 159531892 159531920 -67992658 + (ATTG)n Simple_repeat Simple_repeat 4 31 0 2050 110 15 0 chr3 159531920 159532193 -67992385 - AluSg1 SINE Alu -32 277 1 5727 123 47 35 chr3 159532193 159532402 -67992176 - Tigger3b DNA MER2_type -2788 240 1 4391 238 83 15 chr3 159532402 159532768 -67991810 - L1MEc LINE L1 -3017 3198 2858 2277 96 0 3 chr3 159532768 159533060 -67991518 - AluSx SINE Alu -16 296 6 4391 238 83 15 chr3 159533060 159534919 -67989659 - L1MEc LINE L1 -3357 2858 847 206 237 17 0 chr3 159535225 159535284 -67989294 + (CATA)n Simple_repeat Simple_repeat 2 61 0 216 277 0 0 chr3 159536339 159536386 -67988192 - MIR SINE MIR -195 67 21 1474 199 11 46 chr3 159536528 159536875 -67987703 - L1MC4 LINE L1 0 8042 7708 635 244 128 6 chr3 159537028 159537208 -67987370 + MIR SINE MIR 48 249 -13 1250 234 109 66 chr3 159537307 159537843 -67986735 + MLT1F1 LTR MaLR 1 593 0 368 209 45 36 chr3 159538241 159538351 -67986227 - MLT1J LTR MaLR 0 511 401 341 247 26 4 chr3 159538478 159538597 -67985981 - MLT1J LTR MaLR -310 178 63 245 350 57 8 chr3 159538811 159538934 -67985644 + L2 LINE L2 3124 3252 -20 752 139 0 17 chr3 159540259 159540374 -67984204 - FRAM SINE Alu -5 171 59 293 284 14 0 chr3 159540392 159540466 -67984112 + L2 LINE L2 3193 3267 -5 183 268 0 84 chr3 159540531 159540602 -67983976 + L3 LINE CR1 1396 1460 -117 379 330 93 26 chr3 159540902 159541096 -67983482 - L2 LINE L2 0 3272 3066 1681 193 122 53 chr3 159541101 159541487 -67983091 + MLT1D LTR MaLR 7 432 -73 2304 107 3 0 chr3 159541487 159541796 -67982782 - AluSp SINE Alu -3 310 1 1681 193 122 53 chr3 159541796 159541876 -67982702 + MLT1D LTR MaLR 432 505 0 404 305 81 33 chr3 159541962 159542234 -67982344 - L2 LINE L2 -341 2973 2689 202 317 110 0 chr3 159543171 159543253 -67981325 - MIR SINE MIR -14 248 158 275 321 93 0 chr3 159543285 159543425 -67981153 + MIR SINE MIR 104 256 -6 267 358 53 11 chr3 159543932 159544027 -67980551 - L2 LINE L2 -40 3232 3134 1180 281 118 15 chr3 159544043 159544502 -67980076 + MLT1J LTR MaLR 4 509 -2 1041 268 99 34 chr3 159545446 159545830 -67978748 - MLT1I LTR MaLR 0 409 1 181 384 77 11 chr3 159546910 159547275 -67977303 + L2 LINE L2 2513 2901 -413 293 314 63 98 chr3 159547334 159547589 -67976989 + L2 LINE L2 3027 3272 0 2171 223 25 19 chr3 159547622 159548137 -67976441 + LTR40a LTR ERVL 2 519 0 29 28 0 0 chr3 159550009 159550045 -67974533 + AT_rich Low_complexity Low_complexity 1 36 0 653 286 36 40 chr3 159550228 159550480 -67974098 + MLT1L LTR MaLR 155 405 -210 277 323 0 0 chr3 159550510 159550606 -67973972 + MLT1L LTR MaLR 512 607 -8 4768 140 48 24 chr3 159551330 159552203 -67972375 + L1MB3 LINE L1 5286 6179 -4 309 260 31 10 chr3 159552421 159552517 -67972061 + MLT1K LTR MaLR 489 586 -2 617 256 183 28 chr3 159552529 159552884 -67971694 + HAL1 LINE L1 1404 1813 -694 264 285 48 55 chr3 159553177 159553238 -67971340 + HAL1b LINE L1 748 808 -540 2349 107 0 0 chr3 159553238 159553538 -67971040 + AluSg SINE Alu 1 300 -10 264 285 48 55 chr3 159553538 159553641 -67970937 + HAL1b LINE L1 808 911 -437 882 243 58 88 chr3 159553684 159554156 -67970422 - MLT1J LTR MaLR -44 467 19 1900 214 79 11 chr3 159555742 159556210 -67968368 + MLT1D LTR MaLR 6 505 0 1923 142 67 22 chr3 159556350 159556709 -67967869 + THE1C LTR MaLR 1 375 0 410 275 130 10 chr3 159556994 159557201 -67967377 + L1MC4a LINE L1 5679 5910 -1898 255 31 0 0 chr3 159557639 159557671 -67966907 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 362 287 0 85 chr3 159558772 159558901 -67965677 - MIR3 SINE MIR -47 161 44 220 363 103 7 chr3 159559081 159559227 -67965351 - L3b LINE CR1 -2 1581 1422 25 0 0 0 chr3 159559297 159559322 -67965256 + AT_rich Low_complexity Low_complexity 1 25 0 374 246 28 49 chr3 159560703 159560845 -67963733 - MIR SINE MIR -101 161 23 207 324 45 36 chr3 159562166 159562277 -67962301 - MIR3 SINE MIR -15 193 82 399 276 103 77 chr3 159563117 159563505 -67961073 - L2 LINE L2 0 3272 2875 1555 175 4 18 chr3 159564848 159565122 -67959456 + AluJo SINE Alu 27 296 -16 240 292 53 9 chr3 159566835 159566948 -67957630 - L1MC4 LINE L1 -2 8040 7923 1510 232 36 23 chr3 159567105 159567493 -67957085 - L1ME2 LINE L1 -24 6140 5748 521 299 33 9 chr3 159567772 159567983 -67956595 - MER113 DNA MER1_type? -304 217 2 626 241 24 12 chr3 159567989 159568159 -67956419 - MER5B DNA MER1_type 0 178 7 711 211 40 23 chr3 159568168 159568343 -67956235 + MER5A DNA MER1_type 12 189 0 322 203 122 122 chr3 159569674 159569704 -67954874 - L1MC5 LINE L1 -48 7913 7884 1434 217 13 10 chr3 159569704 159570003 -67954575 + AluJo SINE Alu 1 300 -12 322 203 122 122 chr3 159570003 159570267 -67954311 - L1MC5 LINE L1 -76 7885 7619 605 209 107 23 chr3 159570563 159570778 -67953800 + MIR SINE MIR 19 251 -11 2131 174 77 43 chr3 159571293 159571776 -67952802 - MLT1D LTR MaLR 0 505 7 448 200 60 50 chr3 159571827 159571989 -67952589 + MIR3 SINE MIR 18 182 -26 521 270 150 26 chr3 159572828 159573061 -67951517 + MLT1K LTR MaLR 322 583 -5 606 251 123 12 chr3 159573908 159574043 -67950535 + L1MC4a LINE L1 5673 5792 -2016 306 0 0 0 chr3 159574043 159574077 -67950501 + (GA)n Simple_repeat Simple_repeat 1 34 0 606 251 123 12 chr3 159574077 159574192 -67950386 + L1MC4a LINE L1 5792 5951 -1857 900 274 160 6 chr3 159574423 159574766 -67949812 + MLT1G1 LTR MaLR 1 396 -199 5757 131 35 36 chr3 159574777 159575885 -67948693 - L1MA4 LINE L1 0 6300 5193 296 213 101 72 chr3 159575889 159576038 -67948540 + MLT1H LTR MaLR 353 515 -34 317 349 125 16 chr3 159576208 159576655 -67947923 - L2 LINE L2 -968 2346 1851 2010 139 10 23 chr3 159577510 159577820 -67946758 + AluJb SINE Alu 3 308 -4 650 284 104 3 chr3 159578531 159578858 -67945720 + LTR16C LTR ERVL 4 456 -35 218 193 18 35 chr3 159582007 159582064 -67942514 + L2 LINE L2 3197 3252 -61 227 222 0 0 chr3 159582087 159582132 -67942446 + GA-rich Low_complexity Low_complexity 3 47 0 324 282 39 64 chr3 159583137 159583293 -67941285 - MIR SINE MIR 0 262 111 270 136 0 0 chr3 159583449 159583493 -67941085 + (CA)n Simple_repeat Simple_repeat 2 45 0 281 304 65 0 chr3 159584074 159584166 -67940412 - MIR SINE MIR -29 233 136 218 221 183 10 chr3 159584943 159585047 -67939531 + L2 LINE L2 3146 3267 -5 213 203 43 29 chr3 159585086 159585155 -67939423 - MIR3 SINE MIR -41 167 98 390 198 140 57 chr3 159585540 159585697 -67938881 - MLT1K LTR MaLR -36 552 383 32 0 0 0 chr3 159586379 159586411 -67938167 + AT_rich Low_complexity Low_complexity 1 32 0 2175 209 65 49 chr3 159586413 159587157 -67937421 - L1MD3 LINE L1 -1 7994 7181 1927 151 17 0 chr3 159587349 159587641 -67936937 + AluSg SINE Alu 5 301 -9 1417 199 38 3 chr3 159587642 159587934 -67936644 + L1ME1 LINE L1 5302 5603 -563 1195 204 62 13 chr3 159587945 159588171 -67936407 + AluJo SINE Alu 13 249 -63 548 128 0 0 chr3 159588179 159588257 -67936321 + Tigger3(Golem) DNA MER2_type 2208 2285 -744 226 139 0 0 chr3 159588259 159588295 -67936283 + AluJo SINE Alu 258 293 -9 1314 211 69 14 chr3 159588316 159588673 -67935905 + L1ME1 LINE L1 5608 5982 -180 568 217 8 8 chr3 159588659 159588788 -67935790 + L1MA10 LINE L1 6192 6320 -14 * 182 343 51 15 chr3 159589154 159589291 -67935287 - MIR SINE MIR -119 143 2 573 274 25 20 chr3 159589492 159589696 -67934882 - MIR SINE MIR -52 210 6 258 304 70 0 chr3 159589735 159589850 -67934728 - MIR SINE MIR -14 248 126 246 190 35 0 chr3 159590057 159590115 -67934463 + L2 LINE L2 3248 3307 -6 601 112 41 0 chr3 159590630 159590728 -67933850 + AluSg/x SINE Alu 209 310 0 2232 129 0 0 chr3 159590867 159591170 -67933408 + AluSq SINE Alu 1 303 -10 837 249 54 105 chr3 159591316 159591794 -67932784 - MLT1J LTR MaLR -44 467 14 207 162 0 0 chr3 159593994 159594031 -67930547 + A-rich Low_complexity Low_complexity 1 37 0 8043 86 25 9 chr3 159594266 159595458 -67929120 - L1P LINE L1 -4907 1239 29 337 269 99 12 chr3 159597727 159597898 -67926680 - MIR SINE MIR 0 262 77 225 65 0 0 chr3 159598186 159598217 -67926361 + (TCCC)n Simple_repeat Simple_repeat 4 34 0 2437 147 71 27 chr3 159599352 159599800 -67924778 + Tigger3(Golem) DNA MER2_type 2259 2686 -342 518 18 35 53 chr3 159599800 159599914 -67924664 + (TA)n Simple_repeat Simple_repeat 1 112 0 2135 124 0 7 chr3 159599923 159600213 -67924365 - AluSg SINE Alu -21 289 2 2437 147 71 27 chr3 159600213 159600277 -67924301 + Tigger3(Golem) DNA MER2_type 2693 2804 -224 3753 138 49 7 chr3 159600277 159600974 -67923604 + L1MA4A LINE L1 5347 6072 -231 29 0 0 0 chr3 159601581 159601610 -67922968 + AT_rich Low_complexity Low_complexity 1 29 0 333 234 179 11 chr3 159601842 159602026 -67922552 - L1MC5 LINE L1 -262 7699 7485 23 0 0 0 chr3 159602032 159602055 -67922523 + AT_rich Low_complexity Low_complexity 1 23 0 1452 261 86 20 chr3 159602058 159602161 -67922417 - L1MC5 LINE L1 -1872 5936 5841 2737 39 0 3 chr3 159602161 159602471 -67922107 - AluY SINE Alu -2 309 1 1452 261 86 20 chr3 159602471 159602857 -67921721 - L1MC5 LINE L1 -1967 5841 5415 283 330 0 10 chr3 159604808 159604905 -67919673 + CT-rich Low_complexity Low_complexity 1 96 0 463 295 18 0 chr3 159604998 159605110 -67919468 - MER81 DNA DNA 0 114 1 235 241 0 0 chr3 159605300 159605354 -67919224 + Charlie1 DNA MER1_type 53 106 -2655 * 434 240 40 60 chr3 159605348 159605548 -67919030 + Charlie1 DNA MER1_type 2566 2761 0 204 326 12 0 chr3 159605971 159606057 -67918521 + MIR SINE MIR 66 152 -110 626 226 16 39 chr3 159607349 159607577 -67917001 - L1ME1 LINE L1 -254 5908 5689 641 251 113 25 chr3 159607584 159607859 -67916719 - L1MC4 LINE L1 -219 7823 7525 295 284 11 0 chr3 159607933 159608021 -67916557 - MER94 DNA DNA -37 97 9 1180 281 118 15 chr3 159608880 159609339 -67915239 - MLT1J LTR MaLR -2 509 4 267 358 53 11 chr3 159609355 159609450 -67915128 + L2 LINE L2 3134 3232 -40 277 323 0 0 chr3 159610195 159610291 -67914287 - MLT1L LTR MaLR -8 607 512 653 286 36 40 chr3 159610321 159610573 -67914005 - MLT1L LTR MaLR -210 405 155 29 28 0 0 chr3 159610756 159610792 -67913786 + AT_rich Low_complexity Low_complexity 1 36 0 209 125 18 71 chr3 159661454 159661566 -67863012 + (TTA)n Simple_repeat Simple_repeat 1 106 0 315 82 0 62 chr3 159661751 159661848 -67862730 + (TAA)n Simple_repeat Simple_repeat 1 91 0 2064 126 0 3 chr3 159662269 159662570 -67862008 + AluSx SINE Alu 1 300 -12 1256 195 18 5 chr3 159663358 159663579 -67860999 + MER58A DNA MER1_type 1 224 0 419 236 71 31 chr3 159663808 159663935 -67860643 - MER103 DNA DNA 0 166 35 993 241 152 15 chr3 159665172 159665677 -67858901 + L1ME4a LINE L1 5529 6115 -6 2005 127 3 0 chr3 159665711 159666002 -67858576 + AluSc SINE Alu 1 292 -17 262 272 103 77 chr3 159666105 159666261 -67858317 - MIR3 SINE MIR -52 156 9 395 311 26 20 chr3 159666761 159666912 -67857666 + MIR SINE MIR 20 171 -91 320 287 23 23 chr3 159667447 159667600 -67856978 + MIR SINE MIR 1 156 -64 856 222 17 6 chr3 159667691 159667867 -67856711 + MER63A DNA MER1_type 4 181 -29 299 328 56 0 chr3 159667909 159668034 -67856544 - MIR SINE MIR -111 151 20 646 301 46 14 chr3 159669056 159669272 -67855306 - MIR SINE MIR -35 227 5 345 250 0 92 chr3 159669730 159669775 -67854803 + L2 LINE L2 2562 2610 -704 1088 151 11 17 chr3 159669775 159669954 -67854624 - MER45A DNA AcHobo 0 178 1 345 250 0 92 chr3 159669954 159670060 -67854518 + L2 LINE L2 2610 2699 -615 785 242 9 53 chr3 159670149 159670376 -67854202 - MER20 DNA MER1_type -2 217 1 883 292 62 33 chr3 159670749 159671246 -67853332 + MLT1K LTR MaLR 2 581 -7 469 304 16 87 chr3 159671817 159672070 -67852508 - L2 LINE L2 -95 3177 2943 633 270 81 46 chr3 159672141 159672426 -67852152 + L2 LINE L2 3016 3310 -3 227 175 0 0 chr3 159672429 159672469 -67852109 + (TG)n Simple_repeat Simple_repeat 1 40 0 280 343 75 50 chr3 159672474 159672549 -67852029 - L2 LINE L2 -469 2845 2773 2434 164 34 0 chr3 159672549 159672963 -67851615 + MSTA LTR MaLR 1 428 0 280 343 75 50 chr3 159672963 159672977 -67851601 - L2 LINE L2 -541 2773 2761 1638 73 9 14 chr3 159672977 159673195 -67851383 + L1PA8 LINE L1 5949 6165 -7 280 343 75 50 chr3 159673195 159673504 -67851074 - L2 LINE L2 -553 2761 2436 261 296 23 0 chr3 159673992 159674080 -67850498 + (TA)n Simple_repeat Simple_repeat 2 91 0 1702 63 0 38 chr3 159674116 159674353 -67850225 - AluY SINE Alu -83 228 1 723 286 88 11 chr3 159674353 159674626 -67849952 - L1MC4a LINE L1 -1949 5859 5566 602 318 15 60 chr3 159675474 159675874 -67848704 - L2 LINE L2 -87 3185 2804 306 239 14 0 chr3 159676755 159676826 -67847752 + MIR SINE MIR 188 259 -3 1569 204 140 89 chr3 159676860 159677424 -67847154 + MLT1E LTR MaLR 1 593 0 196 333 61 18 chr3 159677429 159677543 -67847035 - L2 LINE L2 0 3272 3154 233 205 6 143 chr3 159677569 159677730 -67846848 - L2 LINE L2 -271 3001 2863 1746 204 35 38 chr3 159679021 159679095 -67845483 + MLT1B LTR MaLR 8 81 -309 1997 140 0 16 chr3 159679095 159679410 -67845168 - AluSq SINE Alu -3 310 1 1746 204 35 38 chr3 159679410 159679708 -67844870 + MLT1B LTR MaLR 81 379 -11 271 237 35 0 chr3 159679713 159679810 -67844768 + MLT1E LTR MaLR 105 187 -406 210 158 0 26 chr3 159679813 159679851 -67844727 + GA-rich Low_complexity Low_complexity 2 38 0 1989 146 0 0 chr3 159680762 159681070 -67843508 + AluSg SINE Alu 1 308 -2 2295 161 0 3 chr3 159681775 159682142 -67842436 + MER47A DNA MER2_type 1 366 0 2098 108 0 14 chr3 159683151 159683448 -67841130 + AluSc SINE Alu 3 295 -14 182 294 54 11 chr3 159683544 159683636 -67840942 + L2 LINE L2 3007 3102 -170 925 264 159 20 chr3 159684560 159685000 -67839578 - MLT1D LTR MaLR 0 505 5 355 254 107 16 chr3 159687136 159687258 -67837320 - L1ME4a LINE L1 -4 6117 5985 1660 153 48 17 chr3 159687270 159687565 -67837013 - AluJb SINE Alu 0 312 9 202 205 0 0 chr3 159687681 159687720 -67836858 + (CA)n Simple_repeat Simple_repeat 2 40 0 381 273 125 74 chr3 159687825 159688026 -67836552 - L1ME4a LINE L1 -362 5800 5584 192 394 11 0 chr3 159688163 159688257 -67836321 + MIR SINE MIR 162 256 -6 454 297 87 27 chr3 159688531 159688750 -67835828 + MIR SINE MIR 28 259 -3 454 269 84 8 chr3 159688762 159688881 -67835697 + L2 LINE L2 3185 3312 -1 211 342 13 13 chr3 159689434 159689513 -67835065 - L2 LINE L2 -8 3264 3186 2077 159 67 77 chr3 159689850 159690360 -67834218 + MLT1D LTR MaLR 1 505 0 2687 271 136 24 chr3 159690738 159692100 -67832478 + L2 LINE L2 1817 3311 -2 200 343 22 44 chr3 159692104 159692241 -67832337 - MIR SINE MIR 0 262 129 2003 92 14 7 chr3 159692548 159692830 -67831748 - AluSq SINE Alu -29 284 1 212 308 51 51 chr3 159692832 159692988 -67831590 - L2 LINE L2 -940 2374 2219 2640 175 62 12 chr3 159694308 159694794 -67829784 - MLT1F LTR MaLR -2 540 31 235 359 169 10 chr3 159694912 159695424 -67829154 - L2 LINE L2 -480 2834 2243 543 248 168 0 chr3 159695646 159695807 -67828771 - MIR SINE MIR -16 246 59 569 174 98 8 chr3 159696266 159696398 -67828180 - MLT1H LTR MaLR 0 549 406 319 179 0 30 chr3 159696576 159696643 -67827935 - MLT1H LTR MaLR -381 168 104 547 308 157 0 chr3 159697358 159697644 -67826934 - MER102b DNA MER1_type -10 331 1 242 253 267 0 chr3 159697811 159697886 -67826692 - L2 LINE L2 -1 3271 3177 259 269 149 39 chr3 159698228 159698436 -67826142 - L2 LINE L2 -568 2746 2516 487 269 147 5 chr3 159698787 159698984 -67825594 - MIR SINE MIR -26 236 12 344 296 43 12 chr3 159700592 159700754 -67823824 - MIR SINE MIR -8 254 88 209 317 72 48 chr3 159702016 159702183 -67822395 + L2 LINE L2 2985 3155 -117 358 311 105 35 chr3 159702285 159702513 -67822065 - L3 LINE CR1 -103 1474 1231 4967 31 0 0 chr3 159702705 159703277 -67821301 - L1PA2 LINE L1 -1 6154 5583 19241 33 0 0 chr3 159703277 159705726 -67818852 + L1PA2 LINE L1 3122 5570 -584 301 330 0 0 chr3 159705886 159705977 -67818601 + L1MC4 LINE L1 6613 6703 -1339 247 224 0 82 chr3 159705985 159706083 -67818495 - L1MC4 LINE L1 -1339 6703 6614 203 207 35 0 chr3 159706083 159706141 -67818437 + (CATA)n Simple_repeat Simple_repeat 4 63 0 257 287 46 0 chr3 159706144 159706231 -67818347 + L1MC4 LINE L1 6613 6703 -1339 243 253 23 0 chr3 159706234 159706321 -67818257 + L1MC4 LINE L1 6615 6703 -1339 204 125 0 0 chr3 159706321 159706353 -67818225 + (TA)n Simple_repeat Simple_repeat 2 33 0 389 276 0 0 chr3 159706397 159706495 -67818083 + L2 LINE L2 3215 3312 -1 192 268 183 0 chr3 159706779 159706861 -67817717 - MIR SINE MIR 0 262 166 217 232 71 0 chr3 159706922 159706978 -67817600 + L2 LINE L2 3188 3247 -66 225 342 0 0 chr3 159707133 159707212 -67817366 + (TA)n Simple_repeat Simple_repeat 1 79 0 1613 194 44 5 chr3 159707312 159707679 -67816899 - L1ME1 LINE L1 -6 6160 5768 485 159 23 0 chr3 159707650 159707738 -67816840 - L1ME1 LINE L1 -2534 3612 3523 * 3854 174 8 21 chr3 159709117 159709785 -67814793 + L1MB3 LINE L1 5479 6139 -44 2350 78 0 33 chr3 159709785 159710092 -67814486 + AluY SINE Alu 1 297 -14 3854 174 8 21 chr3 159710092 159710135 -67814443 + L1MB3 LINE L1 6139 6181 -2 377 206 84 47 chr3 159710727 159710834 -67813744 + MLT1K LTR MaLR 470 580 -8 1403 164 21 127 chr3 159711341 159711768 -67812810 + L1MC5 LINE L1 6616 6997 -964 996 258 162 48 chr3 159711780 159711981 -67812597 + MLT1H1 LTR MaLR 13 190 -365 2300 104 0 0 chr3 159711981 159712278 -67812300 + AluY SINE Alu 2 298 -13 996 258 162 48 chr3 159712278 159712557 -67812021 + MLT1H1 LTR MaLR 190 548 -7 1394 253 38 36 chr3 159712578 159712595 -67811983 + L1MC5 LINE L1 7287 7302 -659 1691 183 0 35 chr3 159712595 159712906 -67811672 + AluJb SINE Alu 1 300 -12 1394 253 38 36 chr3 159712906 159713128 -67811450 + L1MC5 LINE L1 7302 7522 -439 2235 74 20 17 chr3 159713128 159713424 -67811154 + AluY SINE Alu 2 298 -13 1394 253 38 36 chr3 159713424 159713765 -67810813 + L1MC5 LINE L1 7522 7869 -92 1091 231 27 51 chr3 159714563 159714857 -67809721 + L1MC5 LINE L1 6616 6902 -1059 237 244 0 39 chr3 159715004 159715082 -67809496 + LTR67 LTR ERVL 466 540 -17 * 238 219 31 16 chr3 159715023 159715087 -67809491 + MLT1K LTR MaLR 511 575 -13 3547 111 51 13 chr3 159716760 159717294 -67807284 - MER41A LTR ERV1 0 554 1 374 214 71 29 chr3 159717419 159717559 -67807019 + MIR SINE MIR 117 262 0 1298 299 26 52 chr3 159717598 159718100 -67806478 - LTR33A LTR ERVL -16 507 19 883 296 35 53 chr3 159718721 159719436 -67805142 - L1M4 LINE L1 -1233 4913 4212 203 217 0 117 chr3 159719630 159719690 -67804888 + L2 LINE L2 3214 3266 -6 318 106 0 0 chr3 159720075 159720122 -67804456 + (CA)n Simple_repeat Simple_repeat 1 47 0 12015 96 2 6 chr3 159720617 159722267 -67802311 - L1PA5 LINE L1 -3844 2302 660 24629 52 0 0 chr3 159722268 159726114 -67798464 + L1PA5 LINE L1 2295 6154 0 186 296 70 14 chr3 159726236 159726307 -67798271 + L2 LINE L2 3184 3258 -14 1355 249 40 11 chr3 159727356 159727705 -67796873 - MLT1C LTR MaLR 0 467 109 699 218 0 8 chr3 159727748 159727881 -67796697 - AluJo SINE Alu -178 134 3 332 155 169 0 chr3 159727889 159727960 -67796618 - MLT1C LTR MaLR -379 88 6 468 309 140 28 chr3 159728346 159729104 -67795474 - L2 LINE L2 -54 3259 2399 2670 132 31 21 chr3 159729464 159729888 -67794690 + MSTC LTR MaLR 1 428 0 4122 37 8 0 chr3 159730402 159730886 -67793692 - L1PA4 LINE L1 0 6155 5668 270 345 167 0 chr3 159732068 159732242 -67792336 - MIR SINE MIR -21 241 39 793 184 42 6 chr3 159732418 159732586 -67791992 + MIR SINE MIR 88 261 -1 253 369 7 7 chr3 159734092 159734233 -67790345 - L2 LINE L2 -236 3036 2896 463 274 51 75 chr3 159734861 159735153 -67789425 - L2 LINE L2 0 3313 3029 405 264 27 0 chr3 159735280 159735390 -67789188 + MER81 DNA DNA 1 113 -1 555 314 100 49 chr3 159735943 159736433 -67788145 + L2 LINE L2 2325 2839 -475 201 182 106 15 chr3 159736561 159736627 -67787951 + L2 LINE L2 3007 3078 -194 455 279 54 7 chr3 159737356 159737503 -67787075 + MIR SINE MIR 31 184 -78 504 292 31 12 chr3 159737542 159737703 -67786875 - MIR3 SINE MIR -7 201 38 527 243 51 73 chr3 159737781 159737958 -67786620 + MLT1I LTR MaLR 233 405 -4 402 220 73 0 chr3 159738788 159738897 -67785681 + L2 LINE L2 3194 3310 -3 206 105 26 0 chr3 159739069 159739107 -67785471 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 31 0 0 0 chr3 159741352 159741383 -67783195 + AT_rich Low_complexity Low_complexity 1 31 0 473 223 11 0 chr3 159742131 159742225 -67782353 + MER81 DNA DNA 20 114 0 2770 151 0 53 chr3 159743743 159744252 -67780326 - L1PA16 LINE L1 0 6166 5685 1727 148 0 0 chr3 159744252 159744515 -67780063 + L1PA16 LINE L1 5412 5674 -492 423 280 63 7 chr3 159744516 159744659 -67779919 + MIR SINE MIR 56 206 -56 234 0 0 0 chr3 159745346 159745372 -67779206 + (TTG)n Simple_repeat Simple_repeat 2 27 0 282 335 124 41 chr3 159745476 159745742 -67778836 - L2 LINE L2 -89 3183 2896 275 329 20 20 chr3 159745815 159745964 -67778614 - L2 LINE L2 -499 2815 2667 323 280 33 98 chr3 159746162 159746249 -67778329 - L1ME LINE L1 -5329 1530 1439 7635 118 14 5 chr3 159746249 159748218 -67776360 - L1PA8A LINE L1 0 6131 4151 323 280 33 98 chr3 159748218 159748344 -67776234 - L1ME LINE L1 -5420 1439 1331 210 175 0 25 chr3 159748403 159748443 -67776135 + CT-rich Low_complexity Low_complexity 3 41 0 321 369 28 0 chr3 159749535 159749676 -67774902 - L1ME LINE L1 -5925 1022 878 2031 159 35 13 chr3 159750650 159751027 -67773551 + MLT1B LTR MaLR 2 386 -4 191 163 0 23 chr3 159751027 159751070 -67773508 + GA-rich Low_complexity Low_complexity 3 44 0 510 312 50 23 chr3 159751578 159751796 -67772782 + MIR SINE MIR 28 251 -11 222 344 0 0 chr3 159752821 159752885 -67771693 + L2 LINE L2 3208 3271 -1 272 237 149 61 chr3 159752936 159753050 -67771528 - MIR SINE MIR -3 259 136 11440 200 24 15 chr3 159753069 159753739 -67770839 - L1PA16 LINE L1 -9 6860 6197 1634 186 24 17 chr3 159753739 159754035 -67770543 - AluJb SINE Alu -14 298 1 11440 200 24 15 chr3 159754035 159755127 -67769451 - L1PA16 LINE L1 -672 6197 5116 315 0 0 0 chr3 159755127 159755162 -67769416 + (TG)n Simple_repeat Simple_repeat 2 36 0 11440 200 24 15 chr3 159755162 159757368 -67767210 - L1PA16 LINE L1 -1753 5116 2858 10143 179 16 19 chr3 159757368 159757579 -67766999 - L1PA16 LINE L1 -4226 2623 2413 2327 97 7 0 chr3 159757579 159757887 -67766691 + AluY SINE Alu 1 310 -1 10143 179 16 19 chr3 159757887 159759908 -67764670 - L1PA16 LINE L1 -4436 2413 714 390 235 129 23 chr3 159759908 159759972 -67764606 - MIR SINE MIR -113 149 93 882 141 38 16 chr3 159759972 159760156 -67764422 - MER53 DNA DNA 0 189 2 390 235 129 23 chr3 159760156 159760223 -67764355 - MIR SINE MIR -169 93 4 290 287 127 26 chr3 159760293 159760829 -67763749 - L1M4 LINE L1 -2682 3464 2875 408 201 13 31 chr3 159761055 159761182 -67763396 - MLT1J1 LTR MaLR -296 150 24 461 309 54 64 chr3 159761238 159761627 -67762951 - L1M4 LINE L1 -3460 2686 2302 196 303 226 14 chr3 159762391 159762824 -67761754 + L2 LINE L2 555 1079 -2235 1361 190 94 43 chr3 159762830 159763265 -67761313 + MLT1C LTR MaLR 1 467 0 220 330 11 44 chr3 159763360 159763451 -67761127 + L2 LINE L2 2562 2649 -665 620 261 92 37 chr3 159763693 159763988 -67760590 - MLT1J1 LTR MaLR -135 311 1 206 347 113 50 chr3 159763989 159764211 -67760367 + L2 LINE L2 2825 3060 -212 218 222 333 0 chr3 159764266 159764338 -67760240 + L2 LINE L2 3171 3266 -6 285 278 42 35 chr3 159764562 159764706 -67759872 - HAL1 LINE L1 -962 1545 1401 2464 238 76 60 chr3 159764904 159766382 -67758196 - L1MC5 LINE L1 -385 7576 6091 383 270 98 0 chr3 159766407 159766570 -67758008 - L1MC5 LINE L1 -1841 5967 5789 180 245 0 0 chr3 159767936 159767989 -67756589 + (CATATA)n Simple_repeat Simple_repeat 4 56 0 463 331 6 0 chr3 159768048 159768226 -67756352 + (CA)n Simple_repeat Simple_repeat 1 179 0 1021 159 112 23 chr3 159769263 159769521 -67755057 + L1MCa LINE L1 1280 1560 -4866 940 163 181 4 chr3 159769530 159769806 -67754772 + L1MA9 LINE L1 5950 6274 -38 942 75 2 26 chr3 159769823 159769978 -67754600 + L1MCa LINE L1 1549 1790 -4636 * 3954 259 58 44 chr3 159769973 159770376 -67754202 - L1 LINE L1 -2663 3719 3323 1594 103 31 0 chr3 159770376 159770599 -67753979 + MER30 DNA MER1_type 1 230 0 3954 259 58 44 chr3 159770599 159772431 -67752147 - L1 LINE L1 -3059 3323 1463 628 200 21 0 chr3 159772447 159772592 -67751986 + L1 LINE L1 3545 3692 -2454 834 210 19 0 chr3 159772594 159772756 -67751822 + AluJo SINE Alu 1 165 -147 1264 169 0 8 chr3 159772761 159772998 -67751580 - L1 LINE L1 -2123 4023 3789 696 214 0 0 chr3 159773168 159773308 -67751270 + AluJo SINE Alu 173 312 0 338 148 0 0 chr3 159773310 159773371 -67751207 + L1 LINE L1 3688 3748 -2398 295 123 0 35 chr3 159773373 159773430 -67751148 - MADE1 DNA Mariner 0 80 26 1695 163 17 74 chr3 159773445 159773851 -67750727 + L1 LINE L1 3727 4109 -2037 246 218 22 0 chr3 159773869 159773952 -67750626 - L1ME LINE L1 -628 5536 5452 1036 118 15 20 chr3 159773984 159774179 -67750399 - L1MA4 LINE L1 -16 6284 6091 1294 284 50 83 chr3 159774179 159774632 -67749946 + L1 LINE L1 4106 4572 -1574 1521 151 4 4 chr3 159774632 159774870 -67749708 + AluSg/x SINE Alu 71 308 -4 1294 284 50 83 chr3 159774870 159775134 -67749444 + L1 LINE L1 4572 4843 -1303 2033 149 3 10 chr3 159775134 159775443 -67749135 + AluSx SINE Alu 1 307 -5 1294 284 50 83 chr3 159775443 159775806 -67748772 + L1 LINE L1 4843 5118 -1028 201 290 30 69 chr3 159775826 159775957 -67748621 + MIR SINE MIR 99 224 -38 807 195 55 0 chr3 159776026 159776190 -67748388 - MER5B DNA MER1_type -5 173 1 188 319 0 88 chr3 159777253 159777344 -67747234 + L2 LINE L2 3174 3256 -16 232 279 153 27 chr3 159777401 159777512 -67747066 - L2 LINE L2 -12 3301 3177 187 278 257 5 chr3 159777641 159777828 -67746750 - L2 LINE L2 -337 2977 2744 2362 72 3 3 chr3 159777917 159778221 -67746357 - AluY SINE Alu -7 304 1 232 191 191 0 chr3 159778425 159778509 -67746069 - LTR16A1 LTR ERVL -294 163 64 31 0 0 0 chr3 159779595 159779626 -67744952 + GC_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr3 159780419 159780448 -67744130 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr3 159780472 159780504 -67744074 + AT_rich Low_complexity Low_complexity 1 32 0 39 22 0 0 chr3 159780521 159780567 -67744011 + AT_rich Low_complexity Low_complexity 1 46 0 2490 118 65 92 chr3 159781565 159782122 -67742456 + MER11A LTR ERVK 1 542 -724 221 324 98 10 chr3 159783084 159783186 -67741392 - L2 LINE L2 -20 3252 3142 2087 225 78 30 chr3 159784070 159785004 -67739574 - L1ME1 LINE L1 -5 6161 5070 356 268 24 41 chr3 159785542 159785665 -67738913 - MIR SINE MIR -93 169 49 321 365 43 22 chr3 159785878 159786036 -67738542 + MIR SINE MIR 5 159 -49 315 318 93 47 chr3 159786441 159786677 -67737901 + L1MEd LINE L1 849 1095 -5024 3897 184 48 26 chr3 159786760 159787846 -67736732 + L1MB8 LINE L1 5045 6161 -17 328 181 0 0 chr3 159787873 159787945 -67736633 - L1PA15 LINE L1 -9 6156 6085 758 127 158 6 chr3 159787946 159788104 -67736474 - L1PA15 LINE L1 -135 6030 5849 211 207 0 46 chr3 159788170 159788257 -67736321 + (TAA)n Simple_repeat Simple_repeat 2 84 0 369 292 68 48 chr3 159788497 159788747 -67735831 + L1MEd LINE L1 2193 2447 -3682 * 393 222 113 65 chr3 159788726 159788911 -67735667 + L1ME2 LINE L1 5746 5939 -208 311 353 124 21 chr3 159789108 159789349 -67735229 - L2 LINE L2 -8 3264 2999 189 312 0 26 chr3 159789621 159789698 -67734880 - L2 LINE L2 -575 2739 2665 257 159 0 14 chr3 159791510 159791579 -67732999 + GA-rich Low_complexity Low_complexity 1 68 0 1989 146 3 3 chr3 159791634 159791929 -67732649 + AluSx SINE Alu 1 295 -17 181 279 49 33 chr3 159792031 159792092 -67732486 - L3 LINE CR1 -16 1561 1500 362 276 16 47 chr3 159792377 159792504 -67732074 + MLT1K LTR MaLR 162 284 -304 382 291 46 15 chr3 159792548 159792744 -67731834 + L1M4b LINE L1 5 206 -6653 1063 184 13 6 chr3 159792842 159793113 -67731465 + L1MB8 LINE L1 5205 5479 -699 3583 133 22 5 chr3 159793123 159793923 -67730655 + L1PA12 LINE L1 4680 5491 -672 1252 92 6 23 chr3 159793925 159794099 -67730479 + AluY SINE Alu 98 268 -43 4260 84 9 66 chr3 159794100 159794259 -67730319 + L1PA12 LINE L1 5513 5680 -488 2200 117 0 0 chr3 159794259 159794549 -67730029 + AluSx SINE Alu 1 290 -22 4260 84 9 66 chr3 159794549 159795083 -67729495 + L1PA12 LINE L1 5680 6166 -2 1679 186 40 35 chr3 159795092 159795194 -67729384 + L1MB8 LINE L1 5493 5593 -591 2555 51 0 3 chr3 159795194 159795506 -67729072 + AluY SINE Alu 1 311 0 1679 186 40 35 chr3 159795506 159795806 -67728772 + L1MB8 LINE L1 5593 5897 -287 243 100 0 80 chr3 159795836 159795886 -67728692 + MADE1 DNA Mariner 35 80 0 784 266 27 8 chr3 159795889 159796148 -67728430 + L1MB8 LINE L1 5915 6178 0 329 178 44 44 chr3 159796150 159796240 -67728338 + L1MC/D LINE L1 5382 5471 -2337 677 228 14 7 chr3 159796356 159796501 -67728077 + FRAM SINE Alu 1 146 -30 207 0 0 0 chr3 159796504 159796527 -67728051 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 347 189 244 0 chr3 159796614 159796704 -67727874 - MER67D LTR ERV1 -32 482 371 36292 79 15 9 chr3 159796705 159802816 -67721762 - L1PA6 LINE L1 -1 6153 11 4020 82 2 1 chr3 159802831 159803741 -67720837 - L1P3 LINE L1 -465 5689 4779 * 4765 84 0 1 chr3 159803740 159804421 -67720157 + L1P LINE L1 4064 4743 -1403 529 311 87 19 chr3 159804806 159805128 -67719450 + MLT1I LTR MaLR 64 407 -2 264 308 33 0 chr3 159805601 159805692 -67718886 + L1MC4 LINE L1 6912 7005 -1037 22 35 0 0 chr3 159805699 159805728 -67718850 + AT_rich Low_complexity Low_complexity 1 29 0 1265 216 21 24 chr3 159805956 159806083 -67718495 + AluJo SINE Alu 5 131 -181 221 0 35 0 chr3 159806083 159806112 -67718466 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 1265 216 21 24 chr3 159806112 159806275 -67718303 + AluJo SINE Alu 131 294 -18 185 65 32 0 chr3 159806275 159806306 -67718272 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 761 239 80 84 chr3 159806306 159806450 -67718128 + L1MC5 LINE L1 7323 7466 -495 378 0 0 0 chr3 159806450 159806492 -67718086 + (CA)n Simple_repeat Simple_repeat 1 42 0 761 239 80 84 chr3 159806492 159806807 -67717771 + L1MC5 LINE L1 7466 7781 -180 366 23 0 0 chr3 159806807 159806850 -67717728 + (GGAA)n Simple_repeat Simple_repeat 2 44 0 1726 229 63 33 chr3 159806857 159807345 -67717233 - MLT1D LTR MaLR 0 505 3 761 239 80 84 chr3 159807345 159807473 -67717105 + L1MC5 LINE L1 7787 7917 -44 2466 158 22 5 chr3 159807502 159807919 -67716659 - MSTB LTR MaLR -2 424 1 581 184 33 7 chr3 159808054 159808206 -67716372 + CT-rich Low_complexity Low_complexity 3 158 0 4754 142 109 64 chr3 159808571 159809388 -67715190 + Tigger3b DNA MER2_type 17 904 -2124 209 33 33 0 chr3 159809388 159809418 -67715160 + (CTCA)n Simple_repeat Simple_repeat 1 31 0 4754 142 109 64 chr3 159809418 159809761 -67714817 + Tigger3b DNA MER2_type 904 1230 -1 329 204 68 10 chr3 159809810 159809925 -67714653 + HAL1b LINE L1 1243 1347 -1 311 288 119 31 chr3 159810167 159810246 -67714332 + L1MEc LINE L1 2038 2109 -4287 213 39 0 0 chr3 159810246 159810272 -67714306 + (TG)n Simple_repeat Simple_repeat 1 26 0 311 288 119 31 chr3 159810272 159810352 -67714226 + L1MEc LINE L1 2109 2211 -4185 248 88 0 0 chr3 159810515 159810549 -67714029 + tRNA-Arg-AGA tRNA tRNA 1 34 -42 322 258 31 31 chr3 159812993 159813121 -67711457 + L3b LINE CR1 1324 1451 -132 1204 293 98 18 chr3 159813458 159814157 -67710421 - L2 LINE L2 -3 3310 2557 443 226 26 43 chr3 159814169 159814284 -67710294 + MIR SINE MIR 48 160 -102 346 344 33 22 chr3 159814592 159814775 -67709803 - L1ME3A LINE L1 -226 5944 5760 669 294 34 38 chr3 159814857 159815292 -67709286 - L1ME3A LINE L1 -527 5639 5209 293 251 36 0 chr3 159815706 159815836 -67708742 - L1ME3A LINE L1 -1310 4836 4696 773 168 8 0 chr3 159815929 159816048 -67708530 + FLAM_C SINE Alu 5 124 -9 579 90 0 0 chr3 159816166 159816255 -67708323 - L1MA2 LINE L1 0 6304 6216 395 176 0 11 chr3 159816255 159816346 -67708232 + L1 LINE L1 5109 5198 -948 2970 233 72 45 chr3 159816374 159816827 -67707751 - L1ME2 LINE L1 -107 6852 6413 2122 146 3 0 chr3 159816827 159817135 -67707443 + AluSx SINE Alu 1 309 -3 2970 233 72 45 chr3 159817135 159818722 -67705856 - L1ME2 LINE L1 -546 6413 4771 1746 240 17 39 chr3 159818722 159819238 -67705340 + MLT1D LTR MaLR 1 505 0 434 229 33 56 chr3 159819334 159819548 -67705030 - L1ME2 LINE L1 -5086 1337 1129 292 277 54 61 chr3 159819968 159820331 -67704247 - L1ME3A LINE L1 -1545 4601 4248 245 236 0 56 chr3 159820471 159820543 -67704035 + MLT1K LTR MaLR 179 246 -342 249 291 23 29 chr3 159820719 159820891 -67703687 + (CAGA)n Simple_repeat Simple_repeat 1 171 0 182 133 0 22 chr3 159820909 159820954 -67703624 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 764 317 204 8 chr3 159821176 159821843 -67702735 + L2 LINE L2 2247 3054 -259 290 261 63 54 chr3 159822617 159822728 -67701850 + L2 LINE L2 3201 3312 -1 192 152 0 0 chr3 159823668 159823701 -67700877 - L2 LINE L2 -213 3059 3027 450 316 90 17 chr3 159824694 159824905 -67699673 - MIR SINE MIR -5 257 34 * 700 314 130 21 chr3 159824890 159825358 -67699220 + L2 LINE L2 1817 2335 -979 3526 285 131 31 chr3 159825538 159826410 -67698168 + L2 LINE L2 316 1099 -2215 1320 204 87 48 chr3 159826410 159826634 -67697944 - MSTD LTR MaLR 0 396 149 1698 126 4 8 chr3 159826634 159826872 -67697706 - AluSx SINE Alu -75 237 1 1320 204 87 48 chr3 159826872 159827025 -67697553 - MSTD LTR MaLR -247 149 4 3526 285 131 31 chr3 159827025 159827712 -67696866 + L2 LINE L2 1099 2031 -1283 211 273 209 9 chr3 159827717 159827827 -67696751 + L2 LINE L2 2256 2387 -927 580 246 43 32 chr3 159827841 159828028 -67696550 + MIR SINE MIR 71 259 -3 269 324 80 52 chr3 159828027 159828314 -67696264 + L2 LINE L2 2359 2653 -661 * 195 313 46 114 chr3 159829669 159830036 -67694542 - L2 LINE L2 -22 3250 2909 276 318 26 52 chr3 159830416 159830570 -67694008 - L2 LINE L2 -546 2768 2619 6283 48 0 0 chr3 159830806 159831573 -67693005 - L1PA8 LINE L1 0 6172 5406 393 301 52 91 chr3 159832053 159832472 -67692106 + L2 LINE L2 2870 3272 0 223 343 38 0 chr3 159832478 159832583 -67691995 - MIR SINE MIR -4 258 150 856 224 142 20 chr3 159832601 159832904 -67691674 + MER2 DNA MER2_type 1 340 -5 184 339 32 16 chr3 159832908 159832970 -67691608 - MIR SINE MIR -186 76 14 27 0 0 0 chr3 159833124 159833151 -67691427 + AT_rich Low_complexity Low_complexity 1 27 0 608 187 15 0 chr3 159833156 159833290 -67691288 + L1MA7 LINE L1 6057 6192 -99 217 236 139 14 chr3 159833644 159833716 -67690862 + L2 LINE L2 3225 3305 -8 405 0 0 0 chr3 159834032 159834077 -67690501 + (TG)n Simple_repeat Simple_repeat 2 46 0 243 172 0 81 chr3 159834901 159834988 -67689590 + T-rich Low_complexity Low_complexity 4 83 0 2432 53 0 0 chr3 159834993 159835292 -67689286 - L1PA3 LINE L1 -3 6152 5854 399 232 80 18 chr3 159837866 159837978 -67686600 - L2 LINE L2 -7 3265 3147 1200 255 45 13 chr3 159838108 159838504 -67686074 - L1ME3A LINE L1 -312 5841 5433 1469 271 104 37 chr3 159838530 159839561 -67685017 - L1ME3A LINE L1 -875 5254 4135 2314 36 0 7 chr3 159839561 159839836 -67684742 - AluYa5 SINE Alu 0 311 39 1469 271 104 37 chr3 159839836 159839971 -67684607 - L1ME3A LINE L1 -1994 4135 4010 221 238 25 12 chr3 159839985 159840065 -67684513 + (TA)n Simple_repeat Simple_repeat 2 82 0 247 278 23 34 chr3 159840088 159840264 -67684314 - L1ME3A LINE L1 -2173 3956 3783 328 238 29 0 chr3 159840625 159840730 -67683848 - L1MC4 LINE L1 -3 8039 7932 821 311 111 52 chr3 159840843 159841512 -67683066 - L1ME3A LINE L1 -4862 1257 550 1250 121 9 40 chr3 159841512 159841735 -67682843 + L1MA4A LINE L1 6084 6299 -4 352 279 72 81 chr3 159841909 159842153 -67682425 - L1MC2 LINE L1 -448 5896 5657 1476 188 116 30 chr3 159842179 159842243 -67682335 + MLT1C LTR MaLR 1 58 -409 1339 192 72 39 chr3 159842243 159842458 -67682120 + MER2 DNA MER2_type 1 232 -112 2117 108 3 14 chr3 159842458 159842778 -67681800 + AluSx SINE Alu 1 312 0 1339 192 72 39 chr3 159842778 159842895 -67681683 + MER2 DNA MER2_type 232 344 0 1476 188 116 30 chr3 159842895 159843260 -67681318 + MLT1C LTR MaLR 58 467 0 609 275 59 23 chr3 159843260 159843852 -67680726 - L1MC2 LINE L1 -536 5626 5013 240 267 0 0 chr3 159843946 159844032 -67680546 - L1MC2 LINE L1 -1301 4845 4760 542 298 102 23 chr3 159844093 159844740 -67679838 - L1MC2 LINE L1 -3105 3041 2344 223 214 29 0 chr3 159844764 159844834 -67679744 + (TA)n Simple_repeat Simple_repeat 1 72 0 27 0 0 0 chr3 159845504 159845531 -67679047 + AT_rich Low_complexity Low_complexity 1 27 0 328 277 51 26 chr3 159846459 159846593 -67677985 + MIR SINE MIR 19 163 -64 216 67 0 0 chr3 159846797 159846827 -67677751 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 234 270 253 41 chr3 159846864 159847253 -67677325 - L2 LINE L2 -92 3221 2733 2012 127 81 43 chr3 159847348 159847718 -67676860 - MLT1B LTR MaLR 0 390 7 261 281 57 66 chr3 159847725 159847962 -67676616 - L2 LINE L2 -315 2957 2725 484 271 116 62 chr3 159848303 159848528 -67676050 + MIR SINE MIR 20 256 -6 476 299 116 13 chr3 159848818 159849042 -67675536 - MIR SINE MIR -13 249 3 1161 260 24 20 chr3 159849174 159849641 -67674937 - MLT1G LTR MaLR 0 530 9 21 0 0 0 chr3 159850131 159850152 -67674426 + AT_rich Low_complexity Low_complexity 1 21 0 2353 68 0 0 chr3 159850419 159850711 -67673867 - AluSg SINE Alu -18 292 1 505 47 0 0 chr3 159851092 159851156 -67673422 - MSTC LTR MaLR 0 428 365 1369 99 0 0 chr3 159851286 159851457 -67673121 + (G)n Simple_repeat Simple_repeat 1 171 0 190 267 0 0 chr3 159851498 159851528 -67673050 + T-rich Low_complexity Low_complexity 1 30 0 322 307 11 6 chr3 159851560 159851736 -67672842 + C-rich Low_complexity Low_complexity 4 180 0 295 221 19 32 chr3 159851713 159851867 -67672711 + CT-rich Low_complexity Low_complexity 3 154 0 * 364 206 26 35 chr3 159851893 159852193 -67672385 + CT-rich Low_complexity Low_complexity 1 297 0 221 309 24 12 chr3 159852217 159852301 -67672277 + CT-rich Low_complexity Low_complexity 3 87 0 277 267 194 12 chr3 159852486 159852692 -67671886 - MLT1H LTR MaLR -261 288 1 368 212 0 47 chr3 159853176 159853261 -67671317 + MIR SINE MIR 71 151 -111 213 300 47 118 chr3 159853621 159853791 -67670787 + L2 LINE L2 3113 3270 -2 180 0 0 0 chr3 159853931 159853951 -67670627 + (T)n Simple_repeat Simple_repeat 1 20 0 2154 82 0 24 chr3 159857108 159857424 -67667154 + AluSp SINE Alu 1 309 0 29 0 0 0 chr3 159858593 159858622 -67665956 + AT_rich Low_complexity Low_complexity 1 29 0 397 269 83 15 chr3 159858881 159859100 -67665478 - MIR SINE MIR -26 236 3 634 257 16 44 chr3 159859959 159860142 -67664436 + MIR SINE MIR 47 224 -38 199 421 55 14 chr3 159860376 159860521 -67664057 + L2 LINE L2 3122 3272 0 880 271 0 10 chr3 159861482 159861689 -67662889 - MIR SINE MIR -10 252 48 259 376 75 4 chr3 159862723 159862949 -67661629 + L2 LINE L2 2341 2582 -732 1010 266 17 4 chr3 159863715 159863948 -67660630 - MIR SINE MIR -12 250 15 568 259 43 12 chr3 159863946 159864108 -67660470 - MER5B DNA MER1_type -10 168 2 * 214 291 87 0 chr3 159864221 159864324 -67660254 + L2 LINE L2 3138 3249 -23 241 324 107 29 chr3 159864854 159865015 -67659563 + MIR SINE MIR 18 190 -67 24 0 0 0 chr3 159865452 159865476 -67659102 + AT_rich Low_complexity Low_complexity 1 24 0 259 241 0 0 chr3 159865681 159865739 -67658839 - MIR SINE MIR -50 212 155 1093 130 12 0 chr3 159867975 159868144 -67656434 + AluSg/x SINE Alu 140 310 -2 197 296 99 21 chr3 159868671 159868813 -67655765 + L2 LINE L2 2654 2806 -508 1553 227 58 45 chr3 159870568 159871052 -67653526 - MER20B DNA MER1_type -7 776 287 805 130 8 8 chr3 159873244 159873367 -67651211 + L1PA15 LINE L1 6017 6139 -26 1291 256 84 29 chr3 159873409 159873863 -67650715 + LTR16C LTR ERVL 11 489 -2 321 47 0 0 chr3 159873886 159873929 -67650649 + (TG)n Simple_repeat Simple_repeat 2 44 0 1193 143 36 5 chr3 159873934 159874130 -67650448 - L1PA15 LINE L1 0 6165 5964 353 209 70 23 chr3 159875022 159875108 -67649470 - L1MC4 LINE L1 -1339 6703 6614 459 297 29 7 chr3 159875199 159875337 -67649241 + MIR SINE MIR 52 192 -70 589 217 91 14 chr3 159875373 159875516 -67649062 - MLT1G LTR MaLR 0 590 437 370 293 146 33 chr3 159875889 159876101 -67648477 - MIR SINE MIR -4 258 23 26 50 0 0 chr3 159876681 159876721 -67647857 + AT_rich Low_complexity Low_complexity 1 40 0 390 178 20 0 chr3 159878683 159878781 -67645797 + HsTC2 DNA Tc2 1 1891 -7 862 290 97 60 chr3 159878806 159879310 -67645268 + LTR33A LTR ERVL 1 523 0 379 338 140 39 chr3 159879367 159879973 -67644605 + L2 LINE L2 1857 2549 -765 832 219 50 30 chr3 159879973 159880174 -67644404 + MER63A DNA MER1_type 3 207 -3 379 338 140 39 chr3 159880174 159880289 -67644289 + L2 LINE L2 2549 2651 -663 27 29 0 0 chr3 159881608 159881642 -67642936 + AT_rich Low_complexity Low_complexity 1 34 0 956 249 163 7 chr3 159881693 159882134 -67642444 - L1ME4a LINE L1 -73 6048 5539 1563 239 73 26 chr3 159882174 159882854 -67641724 - L1ME1 LINE L1 -21 6313 5594 183 42 0 0 chr3 159882904 159882928 -67641650 + (TTA)n Simple_repeat Simple_repeat 1 24 0 185 293 0 17 chr3 159883751 159883809 -67640769 + L2 LINE L2 3207 3263 -9 493 240 45 7 chr3 159883913 159884067 -67640511 - MER119 DNA MER1_type 0 583 424 303 297 22 93 chr3 159886336 159886518 -67638060 + L2 LINE L2 2919 3087 -185 258 81 0 0 chr3 159887882 159887919 -67636659 + (TG)n Simple_repeat Simple_repeat 2 38 0 859 212 95 68 chr3 159888318 159888582 -67635996 + MSTD LTR MaLR 113 383 -13 21 36 0 0 chr3 159888682 159888710 -67635868 + AT_rich Low_complexity Low_complexity 1 28 0 526 277 17 19 chr3 159888977 159889183 -67635395 - MIR SINE MIR -56 206 2 205 304 11 43 chr3 159889846 159889938 -67634640 + MIR3 SINE MIR 5 93 -115 595 239 22 7 chr3 159889981 159890119 -67634459 - MER5B DNA MER1_type -37 141 2 379 303 49 0 chr3 159891280 159891402 -67633176 - L2 LINE L2 -4 3268 3141 276 280 84 19 chr3 159891688 159891795 -67632783 + MIR SINE MIR 31 144 -64 2211 99 0 0 chr3 159891884 159892178 -67632400 + AluSx SINE Alu 1 294 -18 281 354 123 0 chr3 159892367 159892579 -67631999 + MIR SINE MIR 20 257 -5 210 118 0 0 chr3 159892756 159892790 -67631788 + (TGAA)n Simple_repeat Simple_repeat 4 37 0 1666 169 13 16 chr3 159893531 159893839 -67630739 - AluJb SINE Alu -5 307 1 185 345 11 11 chr3 159894960 159895047 -67629531 - MIR SINE MIR -70 138 52 194 352 171 0 chr3 159895251 159895356 -67629222 + L2 LINE L2 3150 3272 0 279 248 92 55 chr3 159895552 159895661 -67628917 + L2 LINE L2 3160 3272 0 281 271 31 31 chr3 159895766 159895862 -67628716 - MIR SINE MIR -17 245 150 731 276 27 9 chr3 159896285 159896506 -67628072 - MIR SINE MIR -29 233 9 286 289 21 21 chr3 159896578 159896675 -67627903 + MIR3 SINE MIR 59 155 -53 1519 225 59 42 chr3 159898341 159898551 -67626027 + HAL1 LINE L1 2004 2209 -298 509 0 16 0 chr3 159898551 159898612 -67625966 + (TG)n Simple_repeat Simple_repeat 1 62 0 1519 225 59 42 chr3 159898612 159898895 -67625683 + HAL1 LINE L1 2209 2505 -2 24 0 0 0 chr3 159899441 159899465 -67625113 + AT_rich Low_complexity Low_complexity 1 24 0 1069 250 169 37 chr3 159899716 159900360 -67624218 + L2 LINE L2 2343 3070 -243 484 244 99 32 chr3 159900464 159900685 -67623893 + L2 LINE L2 3077 3312 -1 199 298 18 0 chr3 159901173 159901230 -67623348 - L2 LINE L2 -15 3298 3241 27 0 0 0 chr3 159902120 159902147 -67622431 + AT_rich Low_complexity Low_complexity 1 27 0 26 50 0 0 chr3 159902241 159902281 -67622297 + AT_rich Low_complexity Low_complexity 1 40 0 202 79 16 63 chr3 159902838 159902901 -67621677 + (TA)n Simple_repeat Simple_repeat 1 60 0 26 50 0 0 chr3 159903520 159903560 -67621018 + AT_rich Low_complexity Low_complexity 1 40 0 889 304 151 36 chr3 159904276 159905128 -67619450 + L2 LINE L2 1809 2758 -556 894 220 47 5 chr3 159905698 159905889 -67618689 + MER3 DNA MER1_type 11 209 0 419 253 26 32 chr3 159907153 159907307 -67617271 + L1ME LINE L1 5576 5728 -393 231 306 65 24 chr3 159908371 159908495 -67616083 - L2 LINE L2 -20 3293 3165 600 186 0 32 chr3 159910855 159911011 -67613567 - MER113 DNA MER1_type? -370 151 1 24 0 0 0 chr3 159911507 159911531 -67613047 + AT_rich Low_complexity Low_complexity 1 24 0 536 228 72 72 chr3 159911580 159911773 -67612805 - MLT1K LTR MaLR 0 588 396 352 175 0 0 chr3 159912453 159912510 -67612068 - L2 LINE L2 -3 3310 3254 333 287 104 9 chr3 159913602 159913717 -67610861 + MIR SINE MIR 29 154 -108 244 145 177 0 chr3 159914266 159914328 -67610250 - MIR SINE MIR -71 191 119 241 270 0 0 chr3 159916224 159916287 -67608291 - L1ME LINE L1 -534 5628 5566 1258 64 19 0 chr3 159916289 159916446 -67608132 - AluY SINE Alu -8 303 144 401 279 42 52 chr3 159916447 159916669 -67607909 - L1ME LINE L1 -594 5570 5347 2442 93 3 0 chr3 159916669 159916980 -67607598 + AluSp SINE Alu 1 312 -1 401 279 42 52 chr3 159916980 159917215 -67607363 - L1ME LINE L1 -817 5347 5116 234 267 26 43 chr3 159917272 159917388 -67607190 - L1ME LINE L1 -1157 4989 4876 254 308 38 25 chr3 159917664 159917823 -67606755 - L1ME LINE L1 -1483 4663 4503 2472 29 13 33 chr3 159918240 159918547 -67606031 - AluY SINE Alu -10 301 1 788 153 0 14 chr3 159919083 159919299 -67605279 - L1PA16 LINE L1 -9 6157 5867 1040 172 0 0 chr3 159919716 159919873 -67604705 + FRAM SINE Alu 5 161 -15 249 139 0 0 chr3 159919905 159919948 -67604630 + (TCCC)n Simple_repeat Simple_repeat 4 46 0 309 207 58 23 chr3 159920242 159920329 -67604249 + MIR SINE MIR 168 257 -5 8462 149 34 9 chr3 159921384 159923744 -67600834 - L1MA2 LINE L1 -4 6300 3840 307 294 59 28 chr3 159923726 159923981 -67600597 - L1MCc LINE L1 -4949 1474 1293 * 249 286 100 24 chr3 159926538 159926730 -67597848 + MIR SINE MIR 48 256 -6 986 172 54 32 chr3 159926750 159926971 -67597607 + MER96B DNA MER1_type? 10 235 -182 231 241 54 88 chr3 159929215 159929509 -67595069 - L1ME4a LINE L1 -1 6120 5837 194 345 120 7 chr3 159929780 159929922 -67594656 + L2 LINE L2 2917 3074 -198 206 294 174 33 chr3 159929987 159930079 -67594499 + L2 LINE L2 3208 3312 -1 692 303 98 18 chr3 159930219 159930546 -67594032 - MLT1K LTR MaLR -62 526 174 195 250 33 17 chr3 159931373 159931433 -67593145 + MIR SINE MIR 80 140 -122 261 143 41 0 chr3 159932230 159932279 -67592299 - MLT1L LTR MaLR 0 615 565 238 250 62 0 chr3 159932484 159932548 -67592030 - MLT1L LTR MaLR -342 273 206 195 42 0 0 chr3 159934109 159934133 -67590445 + (TTTTA)n Simple_repeat Simple_repeat 3 26 0 1628 193 25 3 chr3 159934138 159934423 -67590155 - AluSx SINE Alu -21 291 1 751 237 46 63 chr3 159934427 159934826 -67589752 - L2 LINE L2 -239 3074 2678 1380 232 119 15 chr3 159934826 159935236 -67589342 - LTR40a LTR ERVL 0 519 67 866 256 47 19 chr3 159935280 159935597 -67588981 - L2 LINE L2 -667 2647 2322 652 188 0 0 chr3 159936306 159936423 -67588155 + Tigger2 DNA MER2_type 2 118 -2600 2302 105 13 0 chr3 159936423 159936727 -67587851 + AluSc SINE Alu 1 308 -1 949 165 12 12 chr3 159936760 159936924 -67587654 + Tigger2 DNA MER2_type 2555 2718 0 276 283 90 0 chr3 159936924 159937069 -67587509 - MER112 DNA MER1_type -98 162 5 1511 207 77 20 chr3 159939065 159939457 -67585121 + MLT2D LTR ERVL 1 414 0 236 330 76 0 chr3 159941779 159941897 -67582681 - MIR3 SINE MIR -43 165 39 474 302 113 5 chr3 159943908 159944120 -67580458 + MIR SINE MIR 16 250 -12 268 305 160 0 chr3 159944665 159944796 -67579782 + MIR SINE MIR 107 258 -4 275 269 140 0 chr3 159944892 159944985 -67579593 - MIR3 SINE MIR -15 193 88 351 273 66 8 chr3 159945263 159945384 -67579194 + MIR SINE MIR 20 147 -115 1636 202 160 8 chr3 159947098 159947499 -67577079 + MLT1C LTR MaLR 6 467 0 324 302 31 8 chr3 159947761 159947890 -67576688 + MIR SINE MIR 14 145 -117 21 0 0 0 chr3 159949301 159949322 -67575256 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 159949604 159949635 -67574943 + AT_rich Low_complexity Low_complexity 1 31 0 245 314 118 25 chr3 159950074 159950278 -67574300 - MIR SINE MIR -20 242 20 359 195 39 0 chr3 159951699 159951776 -67572802 - MIR SINE MIR -155 107 28 317 308 42 35 chr3 159951763 159951906 -67572672 + MIR3 SINE MIR 52 195 -13 * 2336 92 3 7 chr3 159952238 159952542 -67572036 - AluSq SINE Alu -10 303 1 311 230 61 74 chr3 159952644 159952792 -67571786 + MIR SINE MIR 49 194 -68 201 209 164 0 chr3 159952947 159953014 -67571564 + MIR SINE MIR 100 177 -85 216 200 67 0 chr3 159954714 159954759 -67569819 + MIR SINE MIR 125 172 -90 222 265 60 12 chr3 159955280 159955363 -67569215 + L2 LINE L2 2608 2694 -620 567 258 101 10 chr3 159955395 159955593 -67568985 + MIR SINE MIR 21 236 -26 220 350 52 36 chr3 159955926 159956120 -67568458 + L2 LINE L2 3114 3310 -3 288 243 14 0 chr3 159957171 159957245 -67567333 - L1MC5 LINE L1 -185 7776 7702 6377 81 19 0 chr3 159957452 159958521 -67566057 - L1PA11 LINE L1 0 6174 5082 271 269 139 19 chr3 159958637 159958745 -67565833 - L1MD3 LINE L1 -1212 6783 6663 300 234 26 0 chr3 159958746 159958823 -67565755 - MER116 DNA Mariner 0 80 2 519 269 46 27 chr3 159958999 159959218 -67565360 - L1ME LINE L1 -307 5814 5592 263 299 0 0 chr3 159959644 159959721 -67564857 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 187 296 65 19 chr3 159961511 159961619 -67562959 + L2 LINE L2 2887 2999 -273 799 157 63 0 chr3 159961911 159962070 -67562508 - L1MB8 LINE L1 -9 6169 6001 1251 216 31 17 chr3 159962102 159962393 -67562185 - L1MB7 LINE L1 -143 6041 5747 28560 43 4 1 chr3 159962432 159966690 -67557888 - L1PA5 LINE L1 -2 6152 1880 264 226 119 50 chr3 159967334 159967423 -67557155 + MER113 DNA MER1_type? 48 129 -392 2599 156 24 0 chr3 159967423 159967841 -67556737 - MSTC LTR MaLR 0 428 1 264 226 119 50 chr3 159967841 159967910 -67556668 + MER113 DNA MER1_type? 129 217 -304 708 243 33 17 chr3 159968405 159968586 -67555992 - MIR SINE MIR -35 227 44 512 229 21 21 chr3 159969765 159969905 -67554673 + LTR33 LTR ERVL 10 149 -372 369 298 50 0 chr3 159969922 159970043 -67554535 + MIR SINE MIR 117 243 -19 305 159 159 0 chr3 159970237 159970300 -67554278 + MER116 DNA Mariner 2 74 -6 * 1178 227 93 45 chr3 159970298 159970695 -67553883 - LTR33 LTR ERVL -82 439 24 623 194 18 65 chr3 159971548 159971718 -67552860 - MER5B DNA MER1_type 0 178 17 596 195 31 13 chr3 159971744 159971903 -67552675 - MER5A DNA MER1_type -24 165 4 2249 120 3 0 chr3 159972052 159972361 -67552217 - AluSg SINE Alu 0 310 1 302 236 66 19 chr3 159972670 159972776 -67551802 + MIR SINE MIR 25 135 -127 346 266 118 24 chr3 159973618 159973787 -67550791 + MIR SINE MIR 67 251 -11 258 273 13 0 chr3 159974050 159974127 -67550451 - L2 LINE L2 -218 3054 2977 255 340 21 10 chr3 159974361 159974458 -67550120 - MIR SINE MIR -151 111 14 459 309 33 74 chr3 159975333 159975576 -67549002 + MIR SINE MIR 20 252 -10 375 238 0 0 chr3 159976131 159976211 -67548367 + L2 LINE L2 3234 3313 0 195 260 130 78 chr3 159976743 159976897 -67547681 - MIR3 SINE MIR -37 171 10 180 224 82 0 chr3 159977002 159977051 -67547527 - MIR SINE MIR -93 169 117 186 271 17 0 chr3 159977116 159977175 -67547403 - MIR SINE MIR -113 95 36 460 339 80 8 chr3 159978947 159979186 -67545392 + MIR SINE MIR 7 262 0 348 226 39 0 chr3 159979200 159979302 -67545276 + L2 LINE L2 3201 3306 -7 209 250 33 0 chr3 159979530 159979590 -67544988 - MIR SINE MIR -108 154 93 575 286 46 0 chr3 159979872 159980068 -67544510 + MIR SINE MIR 58 262 0 209 325 66 82 chr3 159980749 159980992 -67543586 - L2 LINE L2 -1 3271 3033 195 276 0 0 chr3 159981676 159981734 -67542844 + L2 LINE L2 2910 2967 -305 1202 184 4 8 chr3 160031752 160031991 -67492587 - MLT1A1 LTR MaLR -127 238 1 2047 243 45 39 chr3 160031998 160032867 -67491711 - L1MDa LINE L1 -1306 5234 4361 293 350 57 13 chr3 160033007 160033164 -67491414 - L3 LINE CR1 -15 1562 1399 349 195 149 0 chr3 160035023 160035110 -67489468 + MIR SINE MIR 37 136 -72 924 224 37 30 chr3 160035115 160035410 -67489168 - Charlie4a DNA MER1_type -3 505 209 279 0 0 0 chr3 160036613 160036644 -67487934 + (CA)n Simple_repeat Simple_repeat 2 32 0 * 405 0 0 0 chr3 160036643 160036688 -67487890 + (TA)n Simple_repeat Simple_repeat 1 45 0 329 248 46 0 chr3 160036716 160036825 -67487753 - MER103 DNA DNA -52 114 1 387 304 56 19 chr3 160037774 160037955 -67486623 + MIR SINE MIR 1 191 -65 473 347 38 29 chr3 160038084 160038323 -67486255 + MIR SINE MIR 10 250 -12 4153 220 98 23 chr3 160038642 160040907 -67483671 - L1MDa LINE L1 -2335 4205 1692 207 0 0 0 chr3 160040907 160040930 -67483648 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4153 220 98 23 chr3 160040930 160041499 -67483079 - L1MDa LINE L1 -4848 1692 1167 385 181 0 0 chr3 160041500 160041572 -67483006 - MLT1A1 LTR MaLR 0 365 294 1718 286 156 7 chr3 160041673 160042615 -67481963 + L2 LINE L2 1930 3008 -305 996 179 11 185 chr3 160042691 160043144 -67481434 + MLT1A2 LTR MaLR 1 374 0 349 289 10 19 chr3 160043144 160043248 -67481330 + L2 LINE L2 3186 3288 -25 893 219 88 71 chr3 160043321 160043742 -67480836 + MSTC LTR MaLR 1 428 0 516 244 102 35 chr3 160043780 160043977 -67480601 + MER58C DNA MER1_type 6 215 0 1454 190 7 32 chr3 160046215 160046494 -67478084 + AluJo SINE Alu 2 273 -39 273 209 0 0 chr3 160046506 160046573 -67478005 + Charlie8 DNA MER1_type 98 164 -2253 347 232 12 0 chr3 160047954 160048036 -67476542 - Charlie8 DNA MER1_type -2232 185 103 417 224 32 48 chr3 160049800 160049925 -67474653 - MIR SINE MIR -75 187 65 1028 188 18 54 chr3 160049963 160050186 -67474392 + MER20 DNA MER1_type 4 218 -1 478 310 6 47 chr3 160050194 160050365 -67474213 + MIR3 SINE MIR 38 201 -7 1520 220 13 0 chr3 160050667 160050967 -67473611 - MLT1E3 LTR MaLR 0 624 321 502 239 102 58 chr3 160051030 160051235 -67473343 - MER58C DNA MER1_type -1 214 1 346 306 50 25 chr3 160051721 160051881 -67472697 - MER5B DNA MER1_type -13 165 2 236 253 12 24 chr3 160052095 160052178 -67472400 - MER5B DNA MER1_type -96 82 1 197 333 27 0 chr3 160054819 160054894 -67469684 + MIR3 SINE MIR 83 159 -49 219 288 50 86 chr3 160054960 160055099 -67469479 + MIR SINE MIR 79 212 -50 320 297 109 11 chr3 160055205 160055380 -67469198 - L1ME LINE L1 -420 5701 5510 24 53 0 0 chr3 160055474 160055512 -67469066 + AT_rich Low_complexity Low_complexity 1 38 0 282 295 11 0 chr3 160056368 160056463 -67468115 + MIR SINE MIR 163 258 -4 22 0 0 0 chr3 160056951 160056973 -67467605 + AT_rich Low_complexity Low_complexity 1 22 0 699 256 142 53 chr3 160057428 160058111 -67466467 - L2 LINE L2 -2361 953 210 246 267 40 0 chr3 160058234 160058309 -67466269 - L2 LINE L2 0 3272 3195 204 159 0 63 chr3 160058490 160058553 -67466025 + (TA)n Simple_repeat Simple_repeat 2 60 0 479 327 5 41 chr3 160058680 160058900 -67465678 + MIR SINE MIR 43 254 -8 384 250 8 8 chr3 160059200 160059320 -67465258 + MIR SINE MIR 143 262 0 1328 249 95 24 chr3 160059862 160060327 -67464251 - LTR33 LTR ERVL -2 519 22 253 294 15 0 chr3 160060659 160060727 -67463851 - L1MC4a LINE L1 -1 7807 7739 412 314 88 26 chr3 160060837 160061063 -67463515 + MIR SINE MIR 23 262 0 245 355 107 0 chr3 160061050 160061171 -67463407 + L2 LINE L2 3139 3272 0 * 236 273 122 14 chr3 160062299 160062438 -67462140 - HAL1b LINE L1 -571 777 624 234 333 9 26 chr3 160063189 160063303 -67461275 - L2 LINE L2 -543 2771 2660 2425 163 15 15 chr3 160064453 160064859 -67459719 - MSTB LTR MaLR -20 406 1 242 313 34 101 chr3 160064975 160065183 -67459395 + L2 LINE L2 2993 3186 -86 207 272 116 121 chr3 160065298 160065522 -67459056 - MIR SINE MIR -8 254 32 248 354 67 18 chr3 160066522 160066745 -67457833 + MIR SINE MIR 2 235 -27 823 199 28 17 chr3 160067070 160067246 -67457332 - MER5B DNA MER1_type 0 178 1 782 205 11 37 chr3 160067607 160067797 -67456781 - MER5A DNA MER1_type -4 185 1 2224 175 44 10 chr3 160067824 160068236 -67456342 - MSTB LTR MaLR 0 426 1 258 274 40 12 chr3 160068339 160068443 -67456135 - MIR SINE MIR -99 109 3 206 274 23 38 chr3 160070387 160070466 -67454112 + MIR SINE MIR 85 163 -63 303 278 116 35 chr3 160070565 160070738 -67453840 + MIR SINE MIR 47 233 -29 1953 170 12 7 chr3 160070869 160071239 -67453339 - MLT2B2 LTR ERVL -103 417 2 240 354 0 0 chr3 160071856 160071938 -67452640 + MARNA DNA Mariner 70 151 -435 2247 83 3 30 chr3 160071940 160072241 -67452337 + AluSx SINE Alu 1 293 -19 261 264 48 32 chr3 160072400 160072525 -67452053 + L2 LINE L2 2872 2998 -274 263 240 96 94 chr3 160073374 160073547 -67451031 - L1M4 LINE L1 -1303 4843 4672 1121 196 23 5 chr3 160073547 160073766 -67450812 - MER58A DNA MER1_type 0 224 2 263 240 96 94 chr3 160073766 160074062 -67450516 - L1M4 LINE L1 -1474 4672 4373 214 335 112 11 chr3 160074746 160074934 -67449644 + MIR SINE MIR 2 208 -54 292 281 281 0 chr3 160075519 160075654 -67448924 - MIR SINE MIR -79 183 11 229 279 81 23 chr3 160076184 160076270 -67448308 - MIR SINE MIR -139 123 33 259 354 54 0 chr3 160076871 160077018 -67447560 + MIR SINE MIR 51 205 -57 286 362 34 12 chr3 160078347 160078554 -67446024 + MIR SINE MIR 2 216 -46 567 269 88 80 chr3 160079468 160079955 -67444623 - L1M4 LINE L1 -2704 3442 2952 185 316 0 0 chr3 160080112 160080169 -67444409 - MIR SINE MIR -60 148 92 270 210 99 12 chr3 160080652 160080733 -67443845 - MIR SINE MIR -89 173 86 308 266 105 8 chr3 160081372 160081496 -67443082 - L1ME LINE L1 -272 5849 5714 323 230 150 0 chr3 160081500 160081613 -67442965 - L1ME LINE L1 -444 5677 5548 226 361 39 31 chr3 160081840 160081970 -67442608 - MIR SINE MIR -59 149 19 723 272 8 11 chr3 160082714 160082968 -67441610 + MIR SINE MIR 14 261 -1 254 308 36 57 chr3 160083383 160083574 -67441004 - MIR SINE MIR -67 141 10 1213 262 109 24 chr3 160083574 160084032 -67440546 - MER113 DNA MER1_type? -4 517 21 494 268 9 0 chr3 160084933 160085045 -67439533 + MER81 DNA DNA 2 114 0 633 309 12 0 chr3 160085223 160085388 -67439190 - MER91A DNA MER1_type -10 186 20 351 269 160 6 chr3 160085409 160085584 -67438994 - MIR SINE MIR -21 241 40 504 263 133 28 chr3 160085588 160085843 -67438735 - MLT1H LTR MaLR -13 536 255 1800 163 86 11 chr3 160085907 160086256 -67438322 - THE1C LTR MaLR 0 375 1 248 127 0 36 chr3 160087193 160087248 -67437330 + MLT1K LTR MaLR 183 235 -353 260 276 301 0 chr3 160089668 160089824 -67434754 + L2 LINE L2 3070 3272 0 4921 155 59 22 chr3 160090356 160091341 -67433237 - L1MD1 LINE L1 0 6242 5221 402 176 66 11 chr3 160091415 160091506 -67433072 - L1MD1 LINE L1 -1199 4947 4852 390 171 26 13 chr3 160091515 160091591 -67432987 - MLT1A1 LTR MaLR -1 364 288 568 242 75 12 chr3 160093317 160093478 -67431100 - MIR SINE MIR -69 193 23 891 255 113 16 chr3 160093778 160094229 -67430349 - L1MD1 LINE L1 -2850 3296 2802 183 257 71 14 chr3 160094307 160094377 -67430201 - MIR SINE MIR -79 183 110 2154 156 77 2 chr3 160094649 160095067 -67429511 - L1MB1 LINE L1 -5 6163 5715 243 0 0 0 chr3 160095348 160095375 -67429203 + (T)n Simple_repeat Simple_repeat 1 27 0 2292 116 0 6 chr3 160098188 160098499 -67426079 + AluY SINE Alu 1 309 -2 197 227 195 23 chr3 160098715 160098843 -67425735 - MIR SINE MIR -72 190 41 224 286 24 24 chr3 160099054 160099138 -67425440 + L2 LINE L2 3186 3269 -3 279 293 40 10 chr3 160100519 160100618 -67423960 + MIR SINE MIR 33 134 -128 326 315 93 0 chr3 160101700 160101808 -67422770 + L2 LINE L2 2930 3047 -225 189 178 0 0 chr3 160102147 160102192 -67422386 + (TGAA)n Simple_repeat Simple_repeat 1 45 0 295 280 126 59 chr3 160103552 160103791 -67420787 - L3 LINE CR1 -907 670 416 405 341 16 22 chr3 160103792 160103974 -67420604 + MER117 DNA MER1_type 1 181 -16 733 300 21 8 chr3 160103981 160104218 -67420360 + MIR SINE MIR 23 262 0 437 354 26 0 chr3 160104517 160104712 -67419866 - MIR SINE MIR -16 246 47 1375 168 9 9 chr3 160107250 160107523 -67417055 - AluJb SINE Alu 0 331 59 1136 130 13 96 chr3 160107525 160107764 -67416814 - LTR19A LTR ERV1 0 486 268 195 211 99 14 chr3 160108076 160108147 -67416431 - L2 LINE L2 -217 3055 2979 226 302 122 29 chr3 160108424 160108596 -67415982 + MIR SINE MIR 61 248 -14 362 254 78 42 chr3 160109215 160109357 -67415221 + L2 LINE L2 3165 3311 -2 232 230 80 40 chr3 160110015 160110115 -67414463 + MIR3 SINE MIR 3 106 -102 257 179 86 86 chr3 160111245 160111362 -67413216 - MER113 DNA MER1_type? -404 117 1 253 313 0 12 chr3 160111643 160111723 -67412855 - MIR SINE MIR -164 98 20 382 237 72 98 chr3 160114414 160114608 -67409970 + MIR3 SINE MIR 3 191 -17 277 241 151 49 chr3 160114646 160114849 -67409729 - MIR3 SINE MIR -11 251 15 197 286 0 20 chr3 160115005 160115054 -67409524 - L2 LINE L2 -98 3174 3127 267 291 9 64 chr3 160116679 160116708 -67407870 - MLT1J LTR MaLR -297 214 185 976 232 221 35 chr3 160116708 160117134 -67407444 - MLT1D LTR MaLR 0 505 1 267 291 9 64 chr3 160117134 160117214 -67407364 - MLT1J LTR MaLR -326 185 111 273 280 160 0 chr3 160117245 160117320 -67407258 - MER117 DNA MER1_type -110 87 1 201 220 239 18 chr3 160118635 160118744 -67405834 + MIR SINE MIR 124 256 -6 696 298 128 37 chr3 160119105 160119457 -67405121 - MLT1J2 LTR MaLR 0 450 67 190 218 146 64 chr3 160120324 160120434 -67404144 + MIR SINE MIR 13 131 -131 201 258 45 0 chr3 160120441 160120507 -67404071 + MIR SINE MIR 86 154 -108 1995 139 0 17 chr3 160121993 160122288 -67402290 + AluSx SINE Alu 11 300 -12 186 103 0 0 chr3 160125915 160125944 -67398634 + (TTTTG)n Simple_repeat Simple_repeat 1 29 0 366 244 52 0 chr3 160126145 160126260 -67398318 - MIR SINE MIR -90 172 52 262 253 32 11 chr3 160127021 160127116 -67397462 + MIR SINE MIR 38 134 -74 576 296 70 22 chr3 160128980 160129210 -67395368 - MIR SINE MIR -1 261 21 180 0 0 0 chr3 160129558 160129578 -67395000 + (TG)n Simple_repeat Simple_repeat 2 21 0 512 232 66 109 chr3 160130234 160130445 -67394133 - MER63A DNA MER1_type -8 202 1 287 356 8 17 chr3 160130867 160130985 -67393593 - MIR SINE MIR -70 192 76 180 176 0 0 chr3 160131054 160131088 -67393490 + (TG)n Simple_repeat Simple_repeat 1 34 0 196 343 15 51 chr3 160132311 160132448 -67392130 - MIR3 SINE MIR -63 145 14 1479 223 98 22 chr3 160133381 160133767 -67390811 + MER113 DNA MER1_type? 2 430 -91 752 176 79 24 chr3 160133767 160133932 -67390646 - MER96 DNA MER1_type 0 175 2 1479 223 98 22 chr3 160133932 160134002 -67390576 + MER113 DNA MER1_type? 430 493 -28 195 333 46 0 chr3 160134644 160134731 -67389847 + MIR SINE MIR 106 196 -66 302 265 188 0 chr3 160135021 160135138 -67389440 - MIR3 SINE MIR -63 145 7 2031 171 37 11 chr3 160135200 160135574 -67389004 + MLT1B LTR MaLR 5 388 -2 226 284 13 0 chr3 160135986 160136055 -67388523 + MIR SINE MIR 92 168 -40 1798 164 49 0 chr3 160136773 160137060 -67387518 - AluJb SINE Alu -11 301 1 3221 200 117 21 chr3 160137231 160137978 -67386600 - MER21B LTR ERV1 -22 841 14 207 0 0 0 chr3 160137978 160138001 -67386577 + (TCTG)n Simple_repeat Simple_repeat 4 26 0 3221 200 117 21 chr3 160138001 160138017 -67386561 - MER21B LTR ERV1 -849 14 1 306 282 0 0 chr3 160138087 160138165 -67386413 - MER20B DNA MER1_type -607 176 99 896 276 91 40 chr3 160138247 160138743 -67385835 - LTR33 LTR ERVL 0 521 1 235 272 161 0 chr3 160139604 160139685 -67384893 - L2 LINE L2 -17 3255 3162 203 346 51 0 chr3 160139756 160139834 -67384744 - MIR SINE MIR -71 191 110 356 299 36 12 chr3 160140766 160140933 -67383645 + MIR3 SINE MIR 30 200 -8 360 0 0 0 chr3 160141037 160141077 -67383501 + (CA)n Simple_repeat Simple_repeat 1 40 0 22 0 0 0 chr3 160141078 160141100 -67383478 + AT_rich Low_complexity Low_complexity 1 22 0 314 141 0 16 chr3 160141182 160141246 -67383332 + (TG)n Simple_repeat Simple_repeat 2 64 0 199 295 74 32 chr3 160141648 160141743 -67382835 - MIR SINE MIR -115 147 49 330 340 57 20 chr3 160142204 160142448 -67382130 + L2 LINE L2 2725 2977 -337 180 26 53 26 chr3 160142885 160142923 -67381655 + (TG)n Simple_repeat Simple_repeat 2 40 0 239 268 12 0 chr3 160143487 160143569 -67381009 - LTR67 LTR ERVL 0 557 475 1913 145 0 45 chr3 160143810 160144120 -67380458 + AluSx SINE Alu 1 296 -16 244 280 8 42 chr3 160144815 160144933 -67379645 + CT-rich Low_complexity Low_complexity 2 115 0 185 282 0 0 chr3 160145249 160145288 -67379290 + L2 LINE L2 3216 3254 -18 579 260 17 23 chr3 160145341 160145518 -67379060 + MIR SINE MIR 86 261 -1 236 282 39 13 chr3 160145526 160145604 -67378974 - LTR33A LTR ERVL 0 523 444 2050 132 24 18 chr3 160145606 160145939 -67378639 + MER1B DNA MER1_type 1 335 -2 736 276 28 9 chr3 160146544 160146758 -67377820 - MIR SINE MIR -28 234 17 446 279 39 28 chr3 160148148 160148327 -67376251 - Charlie8 DNA MER1_type -2200 217 37 522 282 123 5 chr3 160149535 160149755 -67374823 - MIR SINE MIR -15 247 2 296 263 61 0 chr3 160150942 160151041 -67373537 + MARNA DNA Mariner 391 495 -91 339 167 0 0 chr3 160152511 160152577 -67372001 + (TGAA)n Simple_repeat Simple_repeat 1 66 0 261 301 30 96 chr3 160152578 160152777 -67371801 - L2 LINE L2 -86 3186 3001 196 300 163 12 chr3 160153162 160153242 -67371336 - L2 LINE L2 -22 3250 3159 326 322 82 14 chr3 160153281 160153427 -67371151 - MIR SINE MIR -21 241 86 790 141 65 49 chr3 160154903 160154959 -67369619 - MER53 DNA DNA 0 189 135 2267 89 0 10 chr3 160154959 160155251 -67369327 - AluSc SINE Alu -20 289 1 790 141 65 49 chr3 160155251 160155378 -67369200 - MER53 DNA DNA -54 135 3 320 268 225 7 chr3 160155751 160155893 -67368685 + MIR SINE MIR 9 181 -81 1583 276 31 9 chr3 160155921 160156341 -67368237 + LTR16A LTR ERVL 18 446 -4 29 0 0 0 chr3 160156386 160156415 -67368163 + AT_rich Low_complexity Low_complexity 1 29 0 257 323 101 10 chr3 160156505 160156604 -67367974 + L2 LINE L2 3151 3258 -14 193 353 27 13 chr3 160156960 160157110 -67367468 - L2 LINE L2 -504 2810 2659 25 65 0 0 chr3 160157606 160157652 -67366926 + AT_rich Low_complexity Low_complexity 1 46 0 197 225 42 99 chr3 160157724 160157866 -67366712 + L2 LINE L2 2855 2988 -284 193 320 13 27 chr3 160158014 160158089 -67366489 + L2 LINE L2 3235 3308 -5 795 298 99 45 chr3 160159433 160159948 -67364630 - L2 LINE L2 0 3313 2722 1807 126 82 58 chr3 160159948 160160136 -67364442 - THE1C LTR MaLR 0 375 193 2279 46 0 0 chr3 160160136 160160395 -67364183 - AluY SINE Alu -9 302 44 1807 126 82 58 chr3 160160395 160160571 -67364007 - THE1C LTR MaLR -182 193 2 795 298 99 45 chr3 160160571 160160954 -67363624 - L2 LINE L2 -591 2722 2361 502 276 110 0 chr3 160161614 160161759 -67362819 + MER117 DNA MER1_type 1 161 -36 207 310 0 0 chr3 160161865 160161923 -67362655 + L2 LINE L2 3256 3313 0 1070 271 82 57 chr3 160161985 160162438 -67362140 + LTR16B LTR ERVL 1 464 0 2362 223 34 11 chr3 160162638 160163278 -67361300 - L1PA16 LINE L1 -2392 3754 3100 7114 179 27 20 chr3 160163278 160163466 -67361112 + L1PA16 LINE L1 3759 3944 -2222 297 29 0 0 chr3 160163466 160163500 -67361078 - U2 snRNA snRNA -154 34 1 7114 179 27 20 chr3 160163500 160165666 -67358912 + L1PA16 LINE L1 3944 6157 -9 440 267 8 58 chr3 160166296 160166416 -67358162 + Charlie1 DNA MER1_type 1 114 -2647 204 121 0 172 chr3 160166490 160166548 -67358030 - L2 LINE L2 0 3272 3225 655 85 21 0 chr3 160167255 160167349 -67357229 - Charlie1 DNA MER1_type -233 2528 2433 * 677 223 74 14 chr3 160167348 160167496 -67357082 - Charlie1 DNA MER1_type -2599 162 6 2008 174 18 30 chr3 160168304 160168656 -67355922 + MLT2C1 LTR ERVL 1 332 -82 279 0 0 0 chr3 160168656 160168687 -67355891 + (CA)n Simple_repeat Simple_repeat 2 32 0 2008 174 18 30 chr3 160168687 160168764 -67355814 + MLT2C1 LTR ERVL 332 408 -6 373 229 153 53 chr3 160168915 160169085 -67355493 + MIR SINE MIR 57 243 -19 315 191 0 0 chr3 160170132 160170200 -67354378 + (TGGA)n Simple_repeat Simple_repeat 1 68 0 186 355 0 16 chr3 160170599 160170661 -67353917 - L2 LINE L2 -27 3286 3226 271 331 104 49 chr3 160172526 160172852 -67351726 + L2 LINE L2 2857 3200 -72 4580 216 71 24 chr3 160172855 160175006 -67349572 - L1ME1 LINE L1 -7 6159 3914 287 287 167 0 chr3 160175174 160175282 -67349296 - MIR SINE MIR -18 244 119 273 280 38 30 chr3 160175532 160175664 -67348914 + HAL1 LINE L1 2072 2204 -303 306 274 59 0 chr3 160175790 160175892 -67348686 + MIR SINE MIR 106 213 -49 247 385 77 0 chr3 160176120 160176263 -67348315 - MIR SINE MIR -83 179 26 462 53 109 19 chr3 160176895 160177222 -67347356 + (TA)n Simple_repeat Simple_repeat 1 356 0 205 258 125 94 chr3 160177264 160177392 -67347186 + MIR SINE MIR 52 183 -79 427 305 50 7 chr3 160177584 160177725 -67346853 - L2 LINE L2 -588 2726 2580 1469 221 108 39 chr3 160177857 160177903 -67346675 - MLT1C LTR MaLR 0 467 426 2321 120 5 56 chr3 160177903 160178277 -67346301 - THE1A LTR MaLR 0 355 1 12741 85 8 1 chr3 160178277 160179846 -67344732 - THE1A-int LTR MaLR 0 1580 1 1678 135 135 43 chr3 160179846 160180171 -67344407 - THE1A LTR MaLR 0 355 1 1469 221 108 39 chr3 160180171 160180557 -67344021 - MLT1C LTR MaLR -40 427 3 208 264 0 0 chr3 160180722 160180775 -67343803 + (TA)n Simple_repeat Simple_repeat 1 53 0 6425 109 31 8 chr3 160181363 160182328 -67342250 + L1MA2 LINE L1 5318 6304 0 1220 145 107 0 chr3 160182331 160182565 -67342013 + L1MA2 LINE L1 6046 6304 0 23 33 0 0 chr3 160182565 160182595 -67341983 + AT_rich Low_complexity Low_complexity 1 30 0 416 299 132 10 chr3 160182601 160182805 -67341773 - MIR SINE MIR -32 230 2 517 355 56 16 chr3 160183841 160184092 -67340486 + MIR SINE MIR 2 262 0 379 272 35 0 chr3 160184093 160184207 -67340371 - L2 LINE L2 -1 3312 3195 22 35 0 0 chr3 160184332 160184361 -67340217 + AT_rich Low_complexity Low_complexity 1 29 0 362 239 11 0 chr3 160184416 160184504 -67340074 - MER103 DNA DNA -77 89 1 2035 110 4 7 chr3 160185193 160185501 -67339077 - AluSc SINE Alu 0 307 1 2609 150 21 12 chr3 160185751 160186171 -67338407 + L1MD1 LINE L1 5819 6242 0 2035 159 69 17 chr3 160186378 160186724 -67337854 - THE1B LTR MaLR 0 364 1 12288 105 2 0 chr3 160186724 160188301 -67336277 - THE1B-int LTR MaLR 0 1580 1 2403 108 54 17 chr3 160188301 160188652 -67335926 - THE1B LTR MaLR 0 364 1 219 303 180 33 chr3 160189716 160189838 -67334740 + L2 LINE L2 3133 3272 0 1903 192 14 8 chr3 160190121 160190475 -67334103 + MLT1A1 LTR MaLR 4 359 -6 276 377 16 8 chr3 160191411 160191533 -67333045 + L2 LINE L2 3148 3270 -2 734 258 42 62 chr3 160191552 160191812 -67332766 + MIR SINE MIR 4 258 -4 252 312 39 52 chr3 160191888 160192042 -67332536 + MIR SINE MIR 51 202 -60 773 316 93 26 chr3 160192067 160192672 -67331906 + L2 LINE L2 2029 2673 -641 193 315 121 91 chr3 160192831 160193260 -67331318 + L2 LINE L2 2830 3271 -1 1156 227 18 9 chr3 160193547 160193767 -67330811 + MER58A DNA MER1_type 3 224 0 180 77 0 0 chr3 160193992 160194018 -67330560 + (CTG)n Simple_repeat Simple_repeat 1 26 0 562 309 41 37 chr3 160194047 160194290 -67330288 + MIR SINE MIR 18 261 -1 320 277 168 0 chr3 160194748 160194885 -67329693 + MIR SINE MIR 99 258 -4 290 299 80 22 chr3 160195683 160195820 -67328758 + MIR3 SINE MIR 36 180 -28 3510 277 56 31 chr3 160195971 160196531 -67328047 - L1MEc LINE L1 -4810 1586 1041 360 0 0 0 chr3 160196531 160196571 -67328007 + (TG)n Simple_repeat Simple_repeat 2 41 0 3510 277 56 31 chr3 160196571 160197480 -67327098 - L1MEc LINE L1 -5355 1041 81 446 237 43 0 chr3 160197514 160197607 -67326971 - MIR SINE MIR -92 170 74 235 146 36 18 chr3 160198965 160199020 -67325558 + (CATATA)n Simple_repeat Simple_repeat 4 59 0 1437 197 66 26 chr3 160199055 160199436 -67325142 - HsTC2 DNA Tc2 -44 1854 1283 493 192 58 0 chr3 160199448 160199552 -67325026 - HsTC2 DNA Tc2 -1767 131 22 225 222 0 32 chr3 160199580 160199643 -67324935 - L1MC4 LINE L1 -1342 6700 6640 5327 165 18 33 chr3 160249748 160250661 -67273917 + L1MA9 LINE L1 5264 6160 -152 237 33 0 0 chr3 160250661 160250691 -67273887 + (CA)n Simple_repeat Simple_repeat 1 30 0 5327 165 18 33 chr3 160250691 160250842 -67273736 + L1MA9 LINE L1 6160 6312 0 277 200 80 27 chr3 160250896 160250971 -67273607 + MIR SINE MIR 81 159 -103 679 299 86 41 chr3 160251279 160251831 -67272747 - L1ME4a LINE L1 -16 6105 5501 2188 119 0 0 chr3 160252801 160253111 -67271467 - AluSg SINE Alu 0 310 1 1681 135 4 4 chr3 160253496 160253741 -67270837 + AluSx SINE Alu 1 245 -67 313 277 0 43 chr3 160253855 160253949 -67270629 - L1MC4 LINE L1 -1339 6703 6614 394 275 0 0 chr3 160253954 160254063 -67270515 + (TA)n Simple_repeat Simple_repeat 2 110 0 1918 158 7 3 chr3 160254095 160254386 -67270192 - AluSx SINE Alu -20 292 1 345 47 0 0 chr3 160256370 160256413 -67268165 + (TC)n Simple_repeat Simple_repeat 2 44 0 254 292 0 28 chr3 160256982 160257054 -67267524 + L2 LINE L2 3184 3253 -19 306 50 0 0 chr3 160257060 160257100 -67267478 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 218 237 53 149 chr3 160257501 160257615 -67266963 + L2 LINE L2 3170 3272 0 3744 98 8 0 chr3 160257774 160258283 -67266295 + LTR10D LTR ERV1 1 513 0 2845 91 15 10 chr3 160260317 160260711 -67263867 - L1PA10 LINE L1 -5 6163 5768 372 143 0 0 chr3 160260712 160260768 -67263810 - MLT1A1 LTR MaLR -309 56 1 2125 121 7 10 chr3 160261085 160261377 -67263201 + AluSx SINE Alu 1 293 -19 546 91 0 0 chr3 160261377 160261454 -67263124 + (TA)n Simple_repeat Simple_repeat 2 78 0 2125 121 7 10 chr3 160261454 160261468 -67263110 + AluSx SINE Alu 293 306 -6 217 310 103 24 chr3 160261559 160261772 -67262806 - L2 LINE L2 -867 2447 2218 701 138 14 41 chr3 160261947 160262092 -67262486 - L1PB1 LINE L1 0 6151 6011 190 210 32 65 chr3 160263077 160263139 -67261439 - MER5A DNA MER1_type -1 188 129 1407 224 59 3 chr3 160264502 160264824 -67259754 + MER58B DNA MER1_type 2 341 0 341 288 83 8 chr3 160264981 160265113 -67259465 - MIR SINE MIR -90 172 31 214 302 143 8 chr3 160265232 160265358 -67259220 + MIR SINE MIR 81 223 -39 208 286 29 0 chr3 160265796 160265866 -67258712 + CT-rich Low_complexity Low_complexity 5 76 0 260 319 55 0 chr3 160266367 160266458 -67258120 + MIR SINE MIR 45 140 -68 403 175 175 36 chr3 160267045 160267211 -67257367 - MIR SINE MIR 0 262 74 202 273 91 11 chr3 160267530 160267618 -67256960 - MIR SINE MIR -84 124 30 223 260 60 0 chr3 160267632 160267732 -67256846 - L3 LINE CR1 -239 1338 1233 432 267 57 28 chr3 160267743 160267919 -67256659 + MIR SINE MIR 2 182 -80 312 329 72 0 chr3 160268042 160268194 -67256384 + MIR SINE MIR 72 234 -28 209 229 43 14 chr3 160268298 160268368 -67256210 + MIR SINE MIR 82 153 -109 280 246 16 82 chr3 160268756 160268878 -67255700 - L2 LINE L2 -222 3050 2937 28 48 0 0 chr3 160269071 160269113 -67255465 + AT_rich Low_complexity Low_complexity 1 42 0 7384 124 6 15 chr3 160269113 160270594 -67253984 - L1MA1 LINE L1 0 6302 4836 2380 94 0 0 chr3 160271243 160271540 -67253038 - AluY SINE Alu -14 297 1 32 26 0 0 chr3 160271947 160271986 -67252592 + AT_rich Low_complexity Low_complexity 1 39 0 309 339 98 40 chr3 160272107 160272434 -67252144 - L1ME4a LINE L1 -237 5884 5539 391 290 111 32 chr3 160273152 160273431 -67251147 - MER102a DNA MER1_type -2 328 28 189 365 56 0 chr3 160273493 160273600 -67250978 - MIR SINE MIR -103 159 47 28 48 0 0 chr3 160275044 160275086 -67249492 + AT_rich Low_complexity Low_complexity 1 42 0 321 278 108 34 chr3 160275776 160275952 -67248626 - LTR16C LTR ERVL -29 462 274 556 204 192 12 chr3 160275955 160276127 -67248451 + MER3 DNA MER1_type 6 208 -1 786 237 27 11 chr3 160276388 160276574 -67248004 - MER5A DNA MER1_type 0 189 1 404 323 0 0 chr3 160276614 160276707 -67247871 + MER81 DNA DNA 1 93 -21 1328 206 44 38 chr3 160278011 160278376 -67246202 + L1ME1 LINE L1 5795 6161 -5 463 224 42 35 chr3 160278488 160278659 -67245919 - MIR SINE MIR -58 204 34 227 300 0 0 chr3 160279075 160279135 -67245443 + GA-rich Low_complexity Low_complexity 2 61 0 869 205 54 0 chr3 160279934 160280139 -67244439 - MIR SINE MIR -19 243 28 216 86 0 0 chr3 160280150 160280185 -67244393 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 181 286 143 29 chr3 160281559 160281664 -67242914 + L2 LINE L2 1318 1434 -1880 180 271 21 62 chr3 160281754 160281898 -67242680 + L2 LINE L2 1639 1776 -1538 292 323 12 36 chr3 160281899 160282066 -67242512 + MIR SINE MIR 100 262 0 632 308 188 25 chr3 160282084 160283100 -67241478 + L2 LINE L2 1796 2977 -337 269 333 56 21 chr3 160283209 160283353 -67241225 + L2 LINE L2 3165 3313 0 397 329 12 29 chr3 160283454 160283624 -67240954 + MIR SINE MIR 37 203 -59 265 271 14 0 chr3 160284842 160284912 -67239666 + MIR3 SINE MIR 112 182 -26 228 366 73 0 chr3 160284972 160285095 -67239483 + MIR SINE MIR 57 188 -74 636 273 157 5 chr3 160285165 160285381 -67239197 - MLT1I LTR MaLR -62 347 99 1507 204 16 30 chr3 160285533 160285900 -67238678 - MLT1A1 LTR MaLR 0 365 4 236 290 65 0 chr3 160286029 160286136 -67238442 - L1P LINE L1 -754 5397 5284 367 284 38 22 chr3 160287267 160287450 -67237128 - L1M4 LINE L1 -724 5450 5265 424 213 123 118 chr3 160288320 160288531 -67236047 - MER58C DNA MER1_type 0 215 4 344 197 0 0 chr3 160288675 160288736 -67235842 - Tigger5 DNA MER2_type 0 2323 2263 298 316 0 0 chr3 160288789 160288865 -67235713 - Tigger5 DNA MER2_type -2244 79 4 316 136 0 34 chr3 160288866 160288925 -67235653 - L2 LINE L2 0 3272 3216 442 262 50 7 chr3 160288964 160289105 -67235473 + MIR SINE MIR 10 156 -106 211 157 20 39 chr3 160289414 160289465 -67235113 - MIR SINE MIR -76 132 83 2099 200 17 40 chr3 160291499 160291589 -67232989 - Charlie1b DNA MER1_type -2238 523 432 2222 158 135 38 chr3 160291589 160292063 -67232515 - MLT2B1 LTR ERVL 0 520 1 2099 200 17 40 chr3 160292063 160292501 -67232077 - Charlie1b DNA MER1_type -2329 432 7 183 277 146 77 chr3 160293457 160293587 -67230991 - L2 LINE L2 -9 3263 3125 239 208 0 0 chr3 160294016 160294064 -67230514 - L2 LINE L2 -1 3312 3265 235 333 52 0 chr3 160294222 160294318 -67230260 + MIR SINE MIR 51 151 -111 325 226 81 24 chr3 160294776 160294900 -67229678 + MIR SINE MIR 86 216 -46 1792 190 41 25 chr3 160295120 160295484 -67229094 - MLT1A2 LTR MaLR -1 373 4 318 279 29 29 chr3 160295586 160295690 -67228888 + MIR SINE MIR 9 112 -150 357 43 0 0 chr3 160295836 160295883 -67228695 + (CA)n Simple_repeat Simple_repeat 1 47 0 324 48 0 0 chr3 160295882 160295924 -67228654 + (TC)n Simple_repeat Simple_repeat 2 43 0 * 28 29 0 0 chr3 160296059 160296094 -67228484 + AT_rich Low_complexity Low_complexity 1 35 0 341 261 221 40 chr3 160296512 160296784 -67227794 + L1ME4a LINE L1 5793 6113 -8 198 0 0 0 chr3 160297689 160297711 -67226867 + (TTA)n Simple_repeat Simple_repeat 2 23 0 2326 107 54 25 chr3 160297742 160298096 -67226482 + THE1B LTR MaLR 1 364 0 210 250 0 0 chr3 160298439 160298487 -67226091 + L2 LINE L2 3221 3268 -4 198 281 253 27 chr3 160299849 160299995 -67224583 - L2 LINE L2 0 3313 3135 315 230 0 0 chr3 160301479 160301566 -67223012 + (CTATT)n Simple_repeat Simple_repeat 5 91 0 327 171 57 0 chr3 160301580 160301650 -67222928 + MIR SINE MIR 188 261 -1 25 0 0 0 chr3 160301658 160301683 -67222895 + AT_rich Low_complexity Low_complexity 1 25 0 308 321 9 9 chr3 160301685 160301797 -67222781 - L2 LINE L2 0 3313 3202 188 325 8 24 chr3 160301792 160301915 -67222663 - L2 LINE L2 -303 2969 2849 * 2167 96 19 19 chr3 160302121 160302433 -67222145 - AluSx SINE Alu 0 312 1 666 226 49 40 chr3 160302435 160302661 -67221917 - MIR SINE MIR -13 249 22 267 219 55 0 chr3 160304075 160304148 -67220430 - MIR SINE MIR -75 187 111 196 246 58 0 chr3 160304935 160305004 -67219574 - MIR SINE MIR -70 192 120 257 252 112 89 chr3 160305455 160305669 -67218909 + MER102a DNA MER1_type 95 313 -17 346 332 96 43 chr3 160306875 160307062 -67217516 - L2 LINE L2 0 3272 3076 414 309 101 0 chr3 160308840 160308989 -67215589 - MIR SINE MIR -94 168 5 21 36 0 0 chr3 160309668 160309696 -67214882 + AT_rich Low_complexity Low_complexity 1 28 0 458 279 75 25 chr3 160309822 160309983 -67214595 + MIR SINE MIR 13 181 -81 404 292 99 12 chr3 160310016 160310187 -67214391 - MLT1L LTR MaLR -62 553 368 256 294 76 17 chr3 160313132 160313251 -67211327 - L2 LINE L2 -6 3307 3182 191 344 32 0 chr3 160314087 160314180 -67210398 + MIR SINE MIR 39 134 -74 228 324 0 0 chr3 160314386 160314460 -67210118 + MIR SINE MIR 77 150 -112 467 213 56 28 chr3 160314538 160314646 -67209932 - MLT1L LTR MaLR -2 613 503 263 259 0 0 chr3 160314727 160314781 -67209797 - MLT1L LTR MaLR -235 380 327 420 266 64 32 chr3 160315185 160315467 -67209111 + L1ME4a LINE L1 5831 6121 0 885 153 0 29 chr3 160315885 160316022 -67208556 - AluJo SINE Alu -177 135 3 3362 47 19 5 chr3 160316327 160316844 -67207734 + LTR10C LTR ERV1 1 591 0 456 274 48 24 chr3 160318409 160318577 -67206001 + MIR SINE MIR 20 191 -71 674 271 96 18 chr3 160319473 160319702 -67204876 + MIR SINE MIR 2 248 -14 318 338 39 19 chr3 160319773 160319927 -67204651 + MIR3 SINE MIR 23 179 -29 1826 125 32 21 chr3 160319931 160320210 -67204368 + AluSx SINE Alu 1 282 -30 786 312 69 14 chr3 160321131 160321477 -67203101 + LTR16C LTR ERVL 127 491 0 363 293 96 51 chr3 160321646 160321729 -67202849 + MER91A DNA MER1_type 12 90 -106 2258 204 30 66 chr3 160321729 160322304 -67202274 - MLT2B3 LTR ERVL 0 554 1 363 293 96 51 chr3 160322304 160322377 -67202201 + MER91A DNA MER1_type 90 175 -21 241 283 0 0 chr3 160322429 160322482 -67202096 + MER91A DNA MER1_type 143 195 -1 21 0 0 0 chr3 160323532 160323553 -67201025 + AT_rich Low_complexity Low_complexity 1 21 0 375 283 36 7 chr3 160324125 160324263 -67200315 + MIR3 SINE MIR 67 208 0 297 0 0 0 chr3 160324509 160324542 -67200036 + (TG)n Simple_repeat Simple_repeat 2 34 0 364 261 84 17 chr3 160324894 160325013 -67199565 + MIR SINE MIR 81 207 -55 214 296 86 0 chr3 160325307 160325388 -67199190 - L2 LINE L2 -16 3256 3169 277 349 30 8 chr3 160327014 160327146 -67197432 - MIR SINE MIR -17 245 111 1400 220 119 26 chr3 160327992 160328419 -67196159 - MLT1C LTR MaLR 0 467 1 476 307 102 5 chr3 160328647 160328862 -67195716 - MIR SINE MIR -11 251 16 203 326 163 7 chr3 160329243 160329390 -67195188 + MIR SINE MIR 45 214 -48 403 254 25 17 chr3 160330303 160330421 -67194157 + MER5B DNA MER1_type 2 120 -58 326 290 75 65 chr3 160330714 160330900 -67193678 + MIR SINE MIR 20 207 -55 267 275 38 0 chr3 160331269 160331349 -67193229 + L1ME4a LINE L1 5969 6051 -70 3159 182 25 7 chr3 160331356 160331949 -67192629 - L1MC3 LINE L1 -8 7777 7174 24 53 0 0 chr3 160332659 160332697 -67191881 + AT_rich Low_complexity Low_complexity 1 38 0 1156 178 23 5 chr3 160332984 160333198 -67191380 - MER20 DNA MER1_type 0 219 2 1460 257 139 15 chr3 160333386 160333908 -67190670 - MLT1G LTR MaLR 0 590 22 199 318 56 9 chr3 160334718 160334825 -67189753 - L2 LINE L2 -8 3264 3153 257 245 93 43 chr3 160335181 160335320 -67189258 - MLT1I LTR MaLR -263 146 1 229 288 92 107 chr3 160335341 160335668 -67188910 + L2 LINE L2 2909 3230 -42 2457 79 0 3 chr3 160336070 160336374 -67188204 - AluSq SINE Alu -10 303 1 198 0 0 0 chr3 160336425 160336447 -67188131 + (T)n Simple_repeat Simple_repeat 1 22 0 411 294 14 7 chr3 160338669 160338812 -67185766 + MER117 DNA MER1_type 1 144 -53 2104 164 21 13 chr3 160339770 160340142 -67184436 + THE1C LTR MaLR 1 375 0 729 247 20 76 chr3 160342043 160342347 -67182231 - LTR37B LTR ERV1 -68 400 114 672 234 14 0 chr3 160342348 160342489 -67182089 - MER58B DNA MER1_type 0 341 199 190 339 0 0 chr3 160342642 160342704 -67181874 - L2 LINE L2 -353 2961 2900 1589 158 34 34 chr3 160343708 160344005 -67180573 - MER2 DNA MER2_type 0 345 49 2884 82 70 10 chr3 160344012 160344045 -67180533 - MLT2A1 LTR ERVL -7 437 407 279 114 0 0 chr3 160344045 160344089 -67180489 + (TA)n Simple_repeat Simple_repeat 2 45 0 2884 82 70 10 chr3 160344089 160344467 -67180111 - MLT2A1 LTR ERVL -37 407 1 24 32 0 0 chr3 160344556 160344587 -67179991 + AT_rich Low_complexity Low_complexity 1 31 0 299 250 35 76 chr3 160346160 160346304 -67178274 + MIR SINE MIR 112 249 -13 283 298 77 66 chr3 160346804 160346985 -67177593 + L2 LINE L2 2999 3181 -91 2345 107 3 0 chr3 160347302 160347610 -67176968 + AluSg SINE Alu 1 309 -1 197 221 91 26 chr3 160347781 160347858 -67176720 - MIR SINE MIR -117 145 64 338 213 13 13 chr3 160350600 160350675 -67173903 - MLT1J LTR MaLR -330 181 107 282 189 14 14 chr3 160350721 160350795 -67173783 + (TA)n Simple_repeat Simple_repeat 2 75 0 320 86 0 52 chr3 160350795 160350853 -67173725 + (CA)n Simple_repeat Simple_repeat 2 56 0 220 310 83 21 chr3 160351198 160351343 -67173235 - L2 LINE L2 -168 3145 2992 6670 233 35 29 chr3 160351508 160354324 -67170254 + L1ME1 LINE L1 3328 6162 -4 243 345 40 29 chr3 160354540 160354714 -67169864 - L2 LINE L2 -543 2771 2596 204 40 0 0 chr3 160355607 160355632 -67168946 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 436 324 47 94 chr3 160355634 160355995 -67168583 - L2 LINE L2 -15 3257 2914 295 255 75 21 chr3 160356412 160356506 -67168072 - MIR SINE MIR -77 131 33 305 85 0 43 chr3 160358018 160358065 -67166513 - U2 snRNA snRNA -143 45 1 2292 110 0 0 chr3 160358065 160358364 -67166214 + AluSc SINE Alu 9 307 -2 421 313 50 11 chr3 160358547 160358729 -67165849 + MIR SINE MIR 53 241 -21 210 263 66 40 chr3 160358883 160358959 -67165619 - L2 LINE L2 -1 3312 3235 184 267 29 76 chr3 160358941 160359046 -67165532 - L2 LINE L2 -181 3091 2992 * 440 296 131 22 chr3 160359053 160359367 -67165211 + LTR33 LTR ERVL 15 362 -159 247 229 49 90 chr3 160360992 160361114 -67163464 - MER5B DNA MER1_type -61 117 1 314 253 32 63 chr3 160361200 160361295 -67163283 + L2 LINE L2 3164 3255 -17 207 100 0 0 chr3 160361301 160361331 -67163247 + (GGGA)n Simple_repeat Simple_repeat 3 32 0 258 171 0 0 chr3 160363592 160363633 -67160945 - MER103 DNA DNA -48 118 78 1279 198 53 11 chr3 160363633 160363896 -67160682 + AluJo SINE Alu 13 286 -26 25 0 0 0 chr3 160363897 160363922 -67160656 + AT_rich Low_complexity Low_complexity 1 25 0 385 187 107 0 chr3 160363927 160364002 -67160576 - MER103 DNA DNA -81 85 3 282 193 0 0 chr3 160365114 160365171 -67159407 + CT-rich Low_complexity Low_complexity 2 58 0 310 269 133 12 chr3 160365299 160365548 -67159030 + L1M4 LINE L1 3209 3487 -2659 7086 141 51 18 chr3 160367878 160369066 -67155512 + Tigger3b DNA MER2_type 3 1230 -1 214 200 0 0 chr3 160369116 160369156 -67155422 + L2 LINE L2 3269 3308 -5 548 301 107 10 chr3 160369519 160369725 -67154853 + MIR SINE MIR 20 245 -17 444 283 35 0 chr3 160370515 160370688 -67153890 + L1ME4a LINE L1 5755 5933 -188 22 0 0 0 chr3 160370777 160370799 -67153779 + AT_rich Low_complexity Low_complexity 1 22 0 1848 158 83 57 chr3 160371772 160372227 -67152351 - MLT1C LTR MaLR 0 467 1 288 342 70 32 chr3 160372245 160372403 -67152175 + MIR SINE MIR 76 239 -23 268 224 53 26 chr3 160372816 160372892 -67151686 + L2 LINE L2 2890 2967 -346 1917 170 13 43 chr3 160373434 160373810 -67150768 - MLT1A1 LTR MaLR 0 365 1 237 271 0 0 chr3 160375845 160375904 -67148674 + MIR SINE MIR 83 141 -121 2378 75 6 28 chr3 160376183 160376501 -67148077 - AluY SINE Alu 0 311 1 569 317 12 50 chr3 160376890 160377149 -67147429 - MIR SINE MIR -3 259 11 3522 131 36 69 chr3 160377167 160377802 -67146776 - LTR18B LTR ERVL 0 614 1 234 270 80 115 chr3 160377908 160378134 -67146444 - L2 LINE L2 -63 3209 2992 512 263 182 15 chr3 160379388 160379586 -67144992 + MIR SINE MIR 14 244 -18 1281 228 134 8 chr3 160379594 160379967 -67144611 - L1ME LINE L1 -2039 4041 3622 * 5600 88 19 8 chr3 160379952 160380724 -67143854 - L1PA10 LINE L1 -3 6165 5385 736 255 30 5 chr3 160380716 160380916 -67143662 - L1ME LINE L1 -2448 3632 3428 * 1742 221 73 0 chr3 160380984 160381476 -67143102 - L1ME LINE L1 -3029 3051 2524 1374 284 90 31 chr3 160381495 160382190 -67142388 - L1ME LINE L1 -3611 2469 94 39 80 0 0 chr3 160382425 160382513 -67142065 + AT_rich Low_complexity Low_complexity 1 88 0 35 41 0 0 chr3 160382638 160382687 -67141891 + AT_rich Low_complexity Low_complexity 1 49 0 1468 180 53 24 chr3 160382969 160383347 -67141231 - Charlie5 DNA MER1_type 0 2624 2236 544 217 39 16 chr3 160383351 160383480 -67141098 - MER3 DNA MER1_type -42 167 36 2399 149 71 22 chr3 160383597 160384005 -67140573 - MSTC LTR MaLR 0 428 1 277 286 132 0 chr3 160385058 160385149 -67139429 - MIR SINE MIR -113 149 47 211 205 167 51 chr3 160385539 160385617 -67138961 + L2 LINE L2 3210 3296 -17 22 35 0 0 chr3 160385997 160386026 -67138552 + AT_rich Low_complexity Low_complexity 1 29 0 188 265 44 15 chr3 160386271 160386339 -67138239 - MIR SINE MIR -137 125 56 419 307 17 56 chr3 160386889 160387068 -67137510 - MER20B DNA MER1_type -604 179 8 620 194 50 50 chr3 160387316 160387496 -67137082 - MIR SINE MIR -51 211 32 2393 191 24 30 chr3 160387723 160388262 -67136316 - Charlie1a DNA MER1_type 0 1455 920 1773 151 98 0 chr3 160388289 160388606 -67135972 - MLT1A1 LTR MaLR -17 348 1 3167 218 137 4 chr3 160388609 160389406 -67135172 - Charlie1a DNA MER1_type -552 903 1 319 264 99 41 chr3 160389451 160389572 -67135006 + MIR3 SINE MIR 15 142 -66 4186 198 57 16 chr3 160390236 160390529 -67134049 - MER45B DNA AcHobo -652 929 650 1299 166 9 0 chr3 160390529 160390746 -67133832 - L1PA16 LINE L1 0 6166 5948 4186 198 57 16 chr3 160390746 160391243 -67133335 - MER45B DNA AcHobo -931 650 95 1743 175 14 7 chr3 160391243 160391534 -67133044 + AluJo SINE Alu 1 293 -19 4186 198 57 16 chr3 160391534 160391634 -67132944 - MER45B DNA AcHobo -1486 95 1 347 304 92 27 chr3 160391783 160391967 -67132611 + L2 LINE L2 3118 3313 0 219 229 21 0 chr3 160392187 160392235 -67132343 + L2 LINE L2 3190 3238 -34 246 243 0 27 chr3 160392298 160392372 -67132206 + CT-rich Low_complexity Low_complexity 4 75 0 426 270 116 47 chr3 160393121 160393349 -67131229 + MIR SINE MIR 9 245 -17 228 288 15 0 chr3 160393438 160393504 -67131074 - MER96 DNA MER1_type? -104 71 5 306 319 16 81 chr3 160393528 160393713 -67130865 - MIR3 SINE MIR -22 186 14 615 195 169 7 chr3 160394184 160394338 -67130240 - MER5A DNA MER1_type 0 189 11 261 301 34 91 chr3 160394685 160395037 -67129541 + L2 LINE L2 2818 3149 -123 2200 116 3 0 chr3 160396058 160396351 -67128227 - AluSq SINE Alu -19 294 1 315 258 105 48 chr3 160396739 160396863 -67127715 - L2 LINE L2 -1 3312 3182 192 344 15 30 chr3 160398288 160398419 -67126159 + MIR SINE MIR 125 253 -9 257 287 53 11 chr3 160398599 160398693 -67125885 - MIR SINE MIR -81 127 30 820 294 65 43 chr3 160398780 160399269 -67125309 + L1M3c LINE L1 1356 1855 -5641 3396 247 58 32 chr3 160400365 160402486 -67122092 + L1M3c LINE L1 2049 4157 -3408 2091 213 24 29 chr3 160402759 160402834 -67121744 + MER54A LTR ERVL 490 564 -337 2128 131 3 3 chr3 160402834 160403139 -67121439 - AluSp SINE Alu -8 305 1 2091 213 24 29 chr3 160403139 160403477 -67121101 + MER54A LTR ERVL 564 901 0 11951 176 21 28 chr3 160403492 160405285 -67119293 + L1M3c LINE L1 4176 5947 -1618 1795 114 34 8 chr3 160405285 160405546 -67119032 + L1PB3 LINE L1 5884 6154 0 11951 176 21 28 chr3 160405546 160406305 -67118273 + L1M3c LINE L1 5947 6710 -855 262 300 0 29 chr3 160606309 160606379 -66918199 + L2 LINE L2 3186 3253 -19 306 50 0 0 chr3 160606385 160606425 -66918153 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 259 237 53 149 chr3 160606826 160606940 -66917638 + L2 LINE L2 3170 3272 0 3751 98 8 0 chr3 160607099 160607608 -66916970 + LTR10D LTR ERV1 1 513 0 2841 91 15 10 chr3 160609642 160610036 -66914542 - L1PA10 LINE L1 -5 6163 5768 370 143 0 0 chr3 160610037 160610093 -66914485 - MLT1A1 LTR MaLR -309 56 1 1990 128 6 10 chr3 160610410 160610701 -66913877 + AluSx SINE Alu 1 292 -20 489 110 0 0 chr3 160610701 160610774 -66913804 + (TA)n Simple_repeat Simple_repeat 1 73 0 1990 128 6 10 chr3 160610774 160610795 -66913783 + AluSx SINE Alu 292 312 0 286 343 128 13 chr3 160610795 160611092 -66913486 - L2 LINE L2 -762 2552 2218 687 145 14 41 chr3 160611267 160611412 -66913166 - L1PB1 LINE L1 0 6151 6011 229 220 294 37 chr3 160612397 160612506 -66912072 - MER5A DNA MER1_type -1 188 52 1388 224 59 3 chr3 160613822 160614144 -66910434 + MER58B DNA MER1_type 2 341 0 389 289 84 9 chr3 160614287 160614433 -66910145 - MIR SINE MIR -22 186 31 266 292 138 15 chr3 160614548 160614678 -66909900 + MIR SINE MIR 78 223 -39 208 286 29 0 chr3 160615116 160615186 -66909392 + CT-rich Low_complexity Low_complexity 5 76 0 235 333 63 63 chr3 160615268 160615427 -66909151 + MIR SINE MIR 34 192 -70 340 333 36 36 chr3 160615627 160615765 -66908813 + MIR3 SINE MIR 3 140 -68 483 175 175 36 chr3 160616352 160616518 -66908060 - MIR SINE MIR 0 262 74 239 267 79 40 chr3 160616837 160616938 -66907640 - MIR SINE MIR -84 124 20 267 260 60 0 chr3 160616939 160617039 -66907539 - L3 LINE CR1 -239 1338 1233 506 267 57 28 chr3 160617050 160617226 -66907352 + MIR SINE MIR 2 182 -80 369 335 72 0 chr3 160617349 160617501 -66907077 + MIR SINE MIR 72 234 -28 241 229 43 14 chr3 160617605 160617675 -66906903 + MIR SINE MIR 82 153 -109 318 246 16 82 chr3 160618063 160618185 -66906393 - L2 LINE L2 -222 3050 2937 27 49 0 0 chr3 160618378 160618419 -66906159 + AT_rich Low_complexity Low_complexity 1 41 0 7337 124 6 15 chr3 160618419 160619900 -66904678 - L1MA1 LINE L1 0 6302 4836 2258 94 0 0 chr3 160620549 160620847 -66903731 - AluY SINE Alu -13 298 1 32 26 0 0 chr3 160621256 160621295 -66903283 + AT_rich Low_complexity Low_complexity 1 39 0 466 339 98 40 chr3 160621416 160621743 -66902835 - L1ME4a LINE L1 -237 5884 5539 252 0 0 0 chr3 160621933 160621961 -66902617 + (A)n Simple_repeat Simple_repeat 1 28 0 335 190 0 13 chr3 160623198 160623277 -66901301 + (CA)n Simple_repeat Simple_repeat 1 78 0 214 239 0 0 chr3 160623393 160623439 -66901139 + (TG)n Simple_repeat Simple_repeat 2 47 0 253 240 0 0 chr3 160623459 160623509 -66901069 - L2 LINE L2 -2 3311 3262 208 306 24 24 chr3 160623634 160623758 -66900820 - L2 LINE L2 -265 3048 2925 641 311 68 5 chr3 160624034 160624256 -66900322 - MIR SINE MIR -19 243 8 415 242 32 0 chr3 160624265 160624360 -66900218 - MIR SINE MIR -92 170 73 762 185 8 0 chr3 160624361 160624491 -66900087 - MER45A DNA AcHobo 0 178 48 271 358 25 0 chr3 160624665 160624785 -66899793 + MIR SINE MIR 29 151 -111 848 252 48 12 chr3 160624898 160625148 -66899430 - MIR SINE MIR -3 259 1 2007 197 51 14 chr3 160625578 160626009 -66898569 + MER74A LTR ERVL 1 447 -111 300 288 50 58 chr3 160627312 160627451 -66897127 - MIR SINE MIR -84 178 41 1977 120 0 0 chr3 160627675 160627951 -66896627 + AluSq SINE Alu 21 296 -17 312 320 157 0 chr3 160627952 160628105 -66896473 + MIR SINE MIR 80 256 -6 541 279 99 6 chr3 160628205 160628377 -66896201 - MIR SINE MIR -72 190 3 233 286 297 6 chr3 160629341 160629516 -66895062 - L2 LINE L2 -22 3250 3025 304 318 45 0 chr3 160630083 160630193 -66894385 - MIR SINE MIR -58 204 90 297 311 0 33 chr3 160630424 160630514 -66894064 + L2 LINE L2 3226 3312 -1 671 112 0 0 chr3 160631435 160631542 -66893036 + L1PA13 LINE L1 6056 6162 -1 306 0 0 0 chr3 160631718 160631752 -66892826 + (TG)n Simple_repeat Simple_repeat 1 34 0 247 345 92 7 chr3 160632358 160632500 -66892078 + MIR SINE MIR 5 158 -104 723 253 36 0 chr3 160632649 160632815 -66891763 - MER45A DNA AcHobo -5 173 2 519 254 4 8 chr3 160633013 160633196 -66891382 - MER41B LTR ERV1 -209 426 112 647 268 78 5 chr3 160633574 160633779 -66890799 - MIR SINE MIR -6 256 37 300 158 0 0 chr3 160634211 160634268 -66890310 + (CA)n Simple_repeat Simple_repeat 1 57 0 367 302 151 24 chr3 160635398 160635610 -66888968 - L2 LINE L2 -662 2652 2414 1343 134 9 9 chr3 160637035 160637267 -66887311 + L1MA6 LINE L1 6063 6294 -6 1313 251 28 9 chr3 160638073 160638399 -66886179 - MLT1I LTR MaLR -2 407 76 223 318 94 0 chr3 160638567 160638652 -66885926 + L2 LINE L2 3210 3302 -11 453 243 107 36 chr3 160639605 160639745 -66884833 + MIR3 SINE MIR 17 166 -42 319 288 197 30 chr3 160639775 160639973 -66884605 + MIR SINE MIR 22 252 -10 2042 80 33 0 chr3 160640021 160640332 -66884246 + AluSx SINE Alu 1 320 0 232 200 0 0 chr3 160641264 160641304 -66883274 - L2 LINE L2 -13 3300 3261 378 327 178 14 chr3 160642226 160642440 -66882138 - MIR SINE MIR -1 261 13 256 293 53 0 chr3 160642569 160642644 -66881934 + L2 LINE L2 3176 3254 -18 841 215 46 41 chr3 160643806 160644025 -66880553 + MIR SINE MIR 43 262 0 215 355 96 30 chr3 160644037 160644203 -66880375 - MIR SINE MIR -77 185 9 476 315 20 0 chr3 160644362 160644511 -66880067 + MIR SINE MIR 1 152 -110 287 380 19 0 chr3 160645012 160645120 -66879458 - MIR SINE MIR -69 139 30 536 300 83 43 chr3 160645542 160646048 -66878530 - L1ME4a LINE L1 -48 6073 5548 22 0 0 0 chr3 160646086 160646108 -66878470 + AT_rich Low_complexity Low_complexity 1 22 0 696 260 17 11 chr3 160646341 160646559 -66878019 - MLT1J2 LTR MaLR -218 228 4 333 265 114 38 chr3 160649191 160649323 -66875255 - MIR3 SINE MIR -51 157 16 201 133 48 0 chr3 160652151 160652191 -66872387 - MIR SINE MIR -78 130 79 1429 202 105 26 chr3 160652400 160652751 -66871827 - MLT1B LTR MaLR -11 379 1 290 293 50 97 chr3 160653029 160653288 -66871290 + L2 LINE L2 3026 3272 0 242 255 0 0 chr3 160653299 160653350 -66871228 + GA-rich Low_complexity Low_complexity 4 54 0 262 303 54 88 chr3 160653667 160653928 -66870650 - L2 LINE L2 0 3272 3021 197 308 90 0 chr3 160655023 160655101 -66869477 - L2 LINE L2 -30 3242 3158 315 273 161 14 chr3 160655284 160655427 -66869151 - Charlie8 DNA MER1_type -2230 187 24 2462 160 58 50 chr3 160656824 160657256 -66867322 + MLT1D LTR MaLR 1 439 -66 2298 92 0 52 chr3 160657256 160657584 -66866994 - AluY SINE Alu 0 311 1 2462 160 58 50 chr3 160657584 160657651 -66866927 + MLT1D LTR MaLR 439 504 -1 272 275 95 63 chr3 160658416 160658605 -66865973 + LTR16C LTR ERVL 260 454 -37 2408 82 3 3 chr3 160660165 160660469 -66864109 - AluY SINE Alu -7 304 1 269 316 82 13 chr3 160661010 160661168 -66863410 - MIR SINE MIR -6 256 88 224 280 0 27 chr3 160661448 160661523 -66863055 + L2 LINE L2 2986 3058 -214 21 0 0 0 chr3 160661714 160661735 -66862843 + AT_rich Low_complexity Low_complexity 1 21 0 1466 232 58 10 chr3 160661870 160662267 -66862311 + L1MB8 LINE L1 5762 6177 -1 674 129 29 7 chr3 160662283 160662423 -66862155 + GA-rich Low_complexity Low_complexity 4 146 0 718 230 73 28 chr3 160662893 160663250 -66861328 + L1ME LINE L1 570 942 -5128 375 322 20 10 chr3 160663259 160663461 -66861117 + L1ME LINE L1 965 1168 -4914 * 43797 48 6 1 chr3 160663459 160667285 -66857293 - L1PA4 LINE L1 0 6155 2282 198 0 0 0 chr3 160667285 160667307 -66857271 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 43797 48 6 1 chr3 160667307 160669601 -66854977 - L1PA4 LINE L1 -3873 2282 2 954 246 29 26 chr3 160669601 160670059 -66854519 + L1ME LINE L1 1304 1916 -4345 643 199 31 25 chr3 160671842 160672003 -66852575 + MIR SINE MIR 60 221 -41 225 0 0 0 chr3 160672149 160672174 -66852404 + (T)n Simple_repeat Simple_repeat 1 25 0 454 245 28 0 chr3 160672271 160672377 -66852201 + L1MC5 LINE L1 6692 6800 -1161 * 481 185 169 34 chr3 160672368 160672546 -66852032 + L1MC5 LINE L1 7326 7527 -434 319 272 160 12 chr3 160672698 160672867 -66851711 + L1ME3A LINE L1 5970 6163 -7 234 277 108 47 chr3 160672886 160673099 -66851479 - L2 LINE L2 -16 3256 3031 192 320 16 62 chr3 160673283 160673411 -66851167 - MIR SINE MIR -110 152 31 252 86 0 0 chr3 160673537 160673572 -66851006 + (CA)n Simple_repeat Simple_repeat 2 36 0 642 103 0 0 chr3 160673931 160674018 -66850560 + AluJ/FRAM SINE Alu 218 304 -8 1744 175 3 3 chr3 160674997 160675282 -66849296 + AluJb SINE Alu 1 285 -27 1185 233 72 36 chr3 160675423 160675810 -66848768 + L1ME LINE L1 5283 5692 -478 237 306 63 36 chr3 160675930 160676041 -66848537 - L2 LINE L2 -6 3266 3153 352 281 42 0 chr3 160676166 160676262 -66848316 + L2 LINE L2 3203 3302 -11 183 42 0 0 chr3 160676268 160676292 -66848286 + (TGGA)n Simple_repeat Simple_repeat 1 24 0 302 296 92 0 chr3 160677142 160677284 -66847294 - MIR SINE MIR -29 233 79 9389 131 6 1 chr3 160677898 160680149 -66844429 - L1PA11 LINE L1 0 6174 3919 4147 246 38 26 chr3 160680150 160680273 -66844305 - L1PA12 LINE L1 -6425 1156 1036 2399 93 0 0 chr3 160680273 160680574 -66844004 + AluSg SINE Alu 1 301 -9 4147 246 38 26 chr3 160680574 160681585 -66842993 - L1PA12 LINE L1 -6545 1036 9 233 253 160 0 chr3 160682464 160682539 -66842039 - MIR SINE MIR 0 262 176 2389 70 0 10 chr3 160683238 160683536 -66841042 + AluY SINE Alu 1 295 -16 281 308 48 19 chr3 160684096 160684200 -66840378 + MIR SINE MIR 37 143 -65 508 232 204 0 chr3 160685245 160685387 -66839191 - MER5A DNA MER1_type -6 183 13 476 229 107 0 chr3 160685411 160685551 -66839027 + MIR SINE MIR 76 230 -32 2014 200 71 29 chr3 160686286 160686702 -66837876 - MLT1D LTR MaLR 0 505 65 2080 179 3 0 chr3 160686702 160687049 -66837529 + MER7A DNA MER2_type 1 346 0 2014 200 71 29 chr3 160687049 160687108 -66837470 - MLT1D LTR MaLR -440 65 10 197 297 0 27 chr3 160687797 160687871 -66836707 + MIR SINE MIR 50 121 -141 6247 35 3 3 chr3 160687871 160688608 -66835970 - L1PA5 LINE L1 -1 6153 5417 768 213 290 3 chr3 160688749 160689073 -66835505 + L1M4 LINE L1 3729 4145 -2001 270 235 12 24 chr3 160690903 160690988 -66833590 + MIR SINE MIR 41 124 -84 1246 155 98 11 chr3 160691652 160691929 -66832649 + MER33 DNA MER1_type 1 301 -23 565 242 111 20 chr3 160692131 160692329 -66832249 - MIR SINE MIR -18 244 29 292 247 11 22 chr3 160692824 160692913 -66831665 - MIR SINE MIR -118 144 57 272 208 19 0 chr3 160694027 160694080 -66830498 + L2 LINE L2 3224 3277 -36 1020 190 27 0 chr3 160694237 160694421 -66830157 - MER5A DNA MER1_type 0 189 1 2168 144 9 11 chr3 160694838 160695185 -66829393 - MER47A DNA MER2_type -1 365 20 12609 138 39 17 chr3 160695786 160696486 -66828092 - L1PA11 LINE L1 0 7612 6929 1979 86 0 34 chr3 160696486 160696754 -66827824 - AluY SINE Alu -4 307 49 12609 138 39 17 chr3 160696754 160699074 -66825504 - L1PA11 LINE L1 -683 6929 4555 9824 160 68 9 chr3 160699060 160699096 -66825482 - L1PBa LINE L1 -2453 4409 4377 4715 89 36 32 chr3 160699096 160699816 -66824762 - L1PB1 LINE L1 -4 6147 5425 9824 160 68 9 chr3 160699816 160703794 -66820784 - L1PBa LINE L1 -2485 4377 3 8995 218 57 24 chr3 160703805 160705218 -66819360 - L1PA11 LINE L1 -3006 4578 3213 1839 148 43 35 chr3 160705218 160705590 -66818988 - THE1C LTR MaLR 0 375 1 8995 218 57 24 chr3 160705590 160707305 -66817273 - L1PA11 LINE L1 -4371 3213 7 408 283 147 60 chr3 160707813 160708478 -66816100 - L1MEd LINE L1 -5329 790 68 352 305 15 0 chr3 160708528 160708659 -66815919 - MIR SINE MIR -44 218 86 205 342 35 65 chr3 160709045 160709305 -66815273 - L2 LINE L2 -833 2481 2230 11417 206 24 8 chr3 160709449 160711592 -66812986 + L1PA16 LINE L1 2530 4752 -1414 180 0 0 0 chr3 160711592 160711612 -66812966 + (CAA)n Simple_repeat Simple_repeat 2 21 0 11417 206 24 8 chr3 160711612 160713041 -66811537 + L1PA16 LINE L1 4752 6157 -9 180 156 0 0 chr3 160713110 160713142 -66811436 + MIR SINE MIR 158 189 -73 181 200 100 50 chr3 160713449 160713509 -66811069 + L2 LINE L2 3176 3238 -75 186 273 62 102 chr3 160713849 160713977 -66810601 + L2 LINE L2 3142 3264 -8 882 254 35 86 chr3 160714895 160715160 -66809418 + L1ME LINE L1 5484 5739 -398 2513 58 0 3 chr3 160718401 160718696 -66805882 + AluY SINE Alu 1 294 -17 953 301 112 3 chr3 160719429 160719795 -66804783 - MLT1I LTR MaLR -3 406 1 620 242 105 0 chr3 160720476 160720629 -66803949 + MLT1I LTR MaLR 19 187 -222 282 220 33 0 chr3 160720678 160720752 -66803826 - MIR SINE MIR -65 143 79 313 299 75 52 chr3 160721099 160721233 -66803345 + MIR SINE MIR 54 190 -72 259 364 49 0 chr3 160721499 160721661 -66802917 - L2 LINE L2 -419 2895 2726 472 227 45 0 chr3 160723900 160724010 -66800568 - MER103 DNA DNA -51 115 1 420 266 177 0 chr3 160724685 160724877 -66799701 - MIR SINE MIR -35 227 2 234 312 69 69 chr3 160725006 160725179 -66799399 + MIR3 SINE MIR 12 184 -24 237 262 16 16 chr3 160726191 160726252 -66798326 + MIR SINE MIR 50 110 -152 350 328 47 21 chr3 160727974 160728166 -66796412 + MIR SINE MIR 66 262 0 263 324 28 19 chr3 160728895 160729003 -66795575 - MLT1K LTR MaLR -348 240 132 250 235 0 29 chr3 160729111 160729179 -66795399 - L2 LINE L2 -2 3270 3205 190 367 0 0 chr3 160729193 160729272 -66795306 + MIR SINE MIR 168 246 -16 758 150 108 54 chr3 160729450 160729617 -66794961 + MER5B DNA MER1_type 1 176 -2 1050 214 133 53 chr3 160729966 160730364 -66794214 - LTR41 LTR ERVL -1 772 343 193 211 197 0 chr3 160730455 160730526 -66794052 - MIR SINE MIR -132 130 46 2206 124 0 0 chr3 160732217 160732516 -66792062 + AluSg SINE Alu 12 310 0 240 257 0 57 chr3 160733313 160733383 -66791195 - MIR SINE MIR -7 255 190 266 320 59 54 chr3 160733720 160733942 -66790636 - L2 LINE L2 -453 2861 2639 181 241 279 0 chr3 160734566 160734645 -66789933 - MIR SINE MIR -76 186 86 265 315 59 54 chr3 160735133 160735355 -66789223 - L2 LINE L2 -453 2861 2639 21 0 0 0 chr3 160735690 160735711 -66788867 + AT_rich Low_complexity Low_complexity 1 21 0 314 252 89 8 chr3 160736685 160736808 -66787770 + MIR SINE MIR 74 206 -56 209 180 40 0 chr3 160736809 160736859 -66787719 + (TA)n Simple_repeat Simple_repeat 1 52 0 22 0 0 0 chr3 160737411 160737433 -66787145 + AT_rich Low_complexity Low_complexity 1 22 0 240 269 65 21 chr3 160737748 160737841 -66786737 - L2 LINE L2 -50 3222 3126 248 305 186 0 chr3 160738326 160738493 -66786085 - MIR SINE MIR -45 217 20 254 233 47 81 chr3 160738557 160738643 -66785935 - MLT1I LTR MaLR -13 396 314 303 293 50 43 chr3 160738673 160738908 -66785670 - MLT1J2 LTR MaLR -177 232 1 1469 289 93 9 chr3 160739407 160739947 -66784631 + L1MC4a LINE L1 5371 5955 -1853 1093 264 30 13 chr3 160739986 160740285 -66784293 - MLT1I LTR MaLR -7 402 99 202 273 0 18 chr3 160742002 160742057 -66782521 + L2 LINE L2 3218 3271 -1 455 325 65 13 chr3 160742881 160743112 -66781466 - MIR SINE MIR -6 256 14 378 249 100 50 chr3 160744107 160744348 -66780230 + L1ME4a LINE L1 5868 6120 -1 935 256 42 16 chr3 160745676 160745984 -66778594 + Charlie7 DNA MER1_type 412 727 -1885 29 0 0 0 chr3 160745990 160746019 -66778559 + AT_rich Low_complexity Low_complexity 1 29 0 25 75 0 0 chr3 160746031 160746084 -66778494 + AT_rich Low_complexity Low_complexity 1 53 0 27 29 0 0 chr3 160746156 160746190 -66778388 + AT_rich Low_complexity Low_complexity 1 34 0 195 211 70 0 chr3 160746254 160746311 -66778267 + MIR SINE MIR 129 189 -73 290 307 94 2 chr3 160746828 160746957 -66777621 - MIR SINE MIR -69 139 2 319 300 31 0 chr3 160748743 160748873 -66775705 - MIR SINE MIR -65 197 64 406 281 73 0 chr3 160749617 160749781 -66774797 - MIR SINE MIR -12 250 75 195 69 0 0 chr3 160751813 160751842 -66772736 + (TC)n Simple_repeat Simple_repeat 2 30 0 243 189 40 14 chr3 160752079 160752153 -66772425 + (CAA)n Simple_repeat Simple_repeat 3 78 0 216 291 15 67 chr3 160752971 160753105 -66771473 - MIR SINE MIR -50 212 86 2171 123 3 10 chr3 160754679 160754988 -66769590 - AluSx SINE Alu -5 307 1 1073 205 58 81 chr3 160755142 160755223 -66769355 - MER58B DNA MER1_type -2079 341 260 1926 162 27 0 chr3 160755223 160755557 -66769021 - MER2 DNA MER2_type -1 343 1 1073 205 58 81 chr3 160755557 160755821 -66768757 - MER58B DNA MER1_type -2160 260 4 258 320 29 0 chr3 160756970 160757073 -66767505 - L2 LINE L2 -8 3264 3159 738 138 145 7 chr3 160757621 160757773 -66766805 + MER5A DNA MER1_type 17 189 0 182 259 0 35 chr3 160759078 160759136 -66765442 + L2 LINE L2 3213 3268 -4 240 167 0 0 chr3 160760803 160760851 -66763727 + L1MC4 LINE L1 6655 6702 -1340 237 289 0 26 chr3 160760965 160761041 -66763537 + L2 LINE L2 3226 3299 -14 2012 117 0 46 chr3 160763299 160763623 -66760955 - AluSx SINE Alu -3 309 1 803 319 18 33 chr3 160764957 160765293 -66759285 - MER102b DNA MER1_type -9 332 2 706 194 136 37 chr3 160765471 160765662 -66758916 + MER63A DNA MER1_type 1 210 0 265 177 71 9 chr3 160766614 160766727 -66757851 + (TA)n Simple_repeat Simple_repeat 2 121 0 234 219 37 43 chr3 160766743 160766907 -66757671 + (TTATA)n Simple_repeat Simple_repeat 2 164 0 434 267 67 0 chr3 160768337 160768487 -66756091 - MIR SINE MIR -14 248 89 235 240 0 0 chr3 160769074 160769124 -66755454 + (CATATA)n Simple_repeat Simple_repeat 4 53 0 309 355 47 0 chr3 160769159 160769331 -66755247 + MIR SINE MIR 70 249 -13 225 196 0 18 chr3 160769391 160769447 -66755131 + (TTCA)n Simple_repeat Simple_repeat 1 55 0 477 262 137 0 chr3 160769546 160769729 -66754849 - MIR SINE MIR -7 255 48 249 306 96 38 chr3 160770215 160770372 -66754206 - L2 LINE L2 -31 3282 3117 382 288 25 0 chr3 160770495 160770613 -66753965 - LTR67 LTR ERVL 0 557 437 182 384 40 0 chr3 160770866 160770965 -66753613 + L2 LINE L2 2715 2817 -497 402 196 0 0 chr3 160772155 160772247 -66752331 + GA-rich Low_complexity Low_complexity 2 93 0 524 261 82 31 chr3 160772698 160772955 -66751623 + L1MC/D LINE L1 5308 5577 -782 262 135 0 0 chr3 160773123 160773160 -66751418 + MLT1J1 LTR MaLR 243 279 -167 426 244 96 122 chr3 160773705 160774091 -66750487 + MLT1J LTR MaLR 112 487 -24 3128 128 65 36 chr3 160774401 160774601 -66749977 + L1PA13 LINE L1 5574 5767 -396 2024 93 0 0 chr3 160774601 160774859 -66749719 + AluSq SINE Alu 56 313 0 3128 128 65 36 chr3 160774859 160774917 -66749661 + L1PA13 LINE L1 5767 5822 -341 2127 117 0 17 chr3 160774917 160775217 -66749361 + AluSq SINE Alu 1 295 -18 3128 128 65 36 chr3 160775217 160775512 -66749066 + L1PA13 LINE L1 5822 6144 -19 24 32 0 0 chr3 160775693 160775724 -66748854 + AT_rich Low_complexity Low_complexity 1 31 0 272 333 62 23 chr3 160776639 160776816 -66747762 + MLT1I LTR MaLR 57 240 -169 919 101 8 0 chr3 160776821 160776940 -66747638 + AluSq/x SINE Alu 9 128 -185 339 327 27 0 chr3 160776978 160777088 -66747490 + MLT1I LTR MaLR 248 360 -49 331 305 84 46 chr3 160778209 160778448 -66746130 + L2 LINE L2 2836 3083 -189 2744 259 159 40 chr3 160778569 160779806 -66744772 + MER69 DNA AcHobo 1 1385 -1141 1079 215 145 15 chr3 160779812 160780212 -66744366 + MER69 DNA AcHobo 2019 2470 -56 3226 145 53 7 chr3 160780578 160781252 -66743326 - L1MC1 LINE L1 -10 6323 5587 255 320 40 48 chr3 160782113 160782238 -66742340 - L2 LINE L2 -23 3249 3126 332 254 0 53 chr3 160782474 160782588 -66741990 - MIR SINE MIR -75 187 80 734 243 108 5 chr3 160783479 160783664 -66740914 - MER58A DNA MER1_type -6 218 15 867 212 77 106 chr3 160784225 160784603 -66739975 - LTR37B LTR ERV1 -98 370 4 394 238 95 30 chr3 160785114 160785282 -66739296 + MLT1L LTR MaLR 437 615 0 295 78 39 0 chr3 160785282 160785333 -66739245 + (TG)n Simple_repeat Simple_repeat 1 53 0 714 224 40 36 chr3 160785819 160786042 -66738536 + MER69 DNA AcHobo 2050 2273 -253 651 240 57 117 chr3 160786866 160787216 -66737362 + MER102a DNA MER1_type 1 329 -1 283 341 29 7 chr3 160787319 160787457 -66737121 + MIR SINE MIR 74 214 -48 222 298 0 36 chr3 160787620 160787704 -66736874 - MIR SINE MIR -71 191 111 196 417 42 21 chr3 160787748 160787892 -66736686 + L2 LINE L2 3102 3248 -24 3732 223 25 15 chr3 160788361 160789321 -66735257 - L1ME1 LINE L1 -6 6160 5189 781 178 136 0 chr3 160789318 160789487 -66735091 - L1PA15 LINE L1 0 6165 5974 * 892 234 25 8 chr3 160789479 160789723 -66734855 - L1ME1 LINE L1 -950 5196 4949 2875 260 16 26 chr3 160790083 160790815 -66733763 + L1PA13 LINE L1 1 725 -6062 11839 236 18 24 chr3 160790852 160795048 -66729530 + L1PA13 LINE L1 1290 5459 -1338 220 210 25 0 chr3 160795055 160795136 -66729442 + (TCTA)n Simple_repeat Simple_repeat 4 86 0 827 320 108 25 chr3 160798516 160799044 -66725534 + MLT1K LTR MaLR 2 573 -15 349 353 23 8 chr3 160800322 160800455 -66724123 + MIR SINE MIR 20 154 -108 183 339 51 25 chr3 160800460 160800578 -66724000 + L2 LINE L2 2926 3046 -226 182 219 0 49 chr3 160800722 160800763 -66723815 + L2 LINE L2 3223 3261 -52 332 400 17 7 chr3 160800991 160801281 -66723297 + L1 LINE L1 2326 2618 -3528 424 324 112 41 chr3 160801336 160801990 -66722588 + L1 LINE L1 2752 3451 -2695 928 141 60 5 chr3 160802044 160802228 -66722350 + L1PB1 LINE L1 1 194 -6669 * 1128 99 0 25 chr3 160802216 160802459 -66722119 + L1PB1 LINE L1 993 1378 -5485 * 4006 82 21 20 chr3 160802457 160803113 -66721465 + L1PB1 LINE L1 1619 2275 -4588 5946 121 19 10 chr3 160803158 160804563 -66720015 + L1PB1 LINE L1 5456 6867 0 435 281 8 8 chr3 160805042 160805163 -66719415 - MLT1G1 LTR MaLR -474 121 1 1197 282 53 89 chr3 160805591 160806495 -66718083 + L1ME LINE L1 12 947 -5314 315 0 0 0 chr3 160806495 160806530 -66718048 + (TTG)n Simple_repeat Simple_repeat 2 36 0 2121 110 0 37 chr3 160806534 160806834 -66717744 - AluSc SINE Alu -20 289 1 1197 282 53 89 chr3 160806834 160807738 -66716840 + L1ME LINE L1 950 1844 -4417 * 28212 53 9 0 chr3 160807736 160811504 -66713074 + L1P LINE L1 578 4377 -1769 1302 319 83 35 chr3 160811624 160811763 -66712815 + HERVL LTR ERVL 1448 1579 -4075 1961 152 3 0 chr3 160811763 160812059 -66712519 - AluSq SINE Alu -16 297 1 1302 319 83 35 chr3 160812059 160812219 -66712359 + HERVL LTR ERVL 1579 1730 -3924 2281 93 3 0 chr3 160812219 160812520 -66712058 + AluY SINE Alu 1 302 -9 1302 319 83 35 chr3 160812520 160813120 -66711458 + HERVL LTR ERVL 1730 2391 -3263 2305 320 87 27 chr3 160813151 160814605 -66709973 + HERVL LTR ERVL 2498 4038 -1726 2447 278 85 11 chr3 160814615 160815452 -66709126 + HERVL LTR ERVL 4175 5073 -691 249 319 35 57 chr3 160815972 160816113 -66708465 + L3 LINE CR1 1374 1511 -66 637 239 33 28 chr3 160816117 160816297 -66708281 - MIR SINE MIR -66 196 16 259 316 145 13 chr3 160816787 160816939 -66707639 + MIR3 SINE MIR 33 204 -4 405 235 20 0 chr3 160817633 160817731 -66706847 + L2 LINE L2 1530 1629 -1685 900 277 105 10 chr3 160817732 160818174 -66706404 + L2 LINE L2 2596 3088 -225 1495 172 109 23 chr3 160818206 160818555 -66706023 + MLT1C LTR MaLR 28 406 -61 25 51 0 0 chr3 160818571 160818610 -66705968 + AT_rich Low_complexity Low_complexity 1 39 0 371 274 53 0 chr3 160818821 160818916 -66705662 - MIR SINE MIR -69 193 94 344 243 68 45 chr3 160819637 160819814 -66704764 - L1MC5 LINE L1 -85 7876 7696 512 173 10 0 chr3 160819916 160820062 -66704516 + HSAT4 Satellite centromeric 1 147 -20 1483 208 62 33 chr3 160820282 160820735 -66703843 - L1MC5 LINE L1 -497 7464 6999 1095 220 112 12 chr3 160820735 160820994 -66703584 + AluJb SINE Alu 1 285 -17 439 279 32 34 chr3 160821564 160821863 -66702715 - LTR16A1 LTR ERVL -110 340 1 493 293 68 27 chr3 160821924 160822421 -66702157 - L1MC5 LINE L1 -1011 6803 6283 1685 256 73 18 chr3 160822665 160823270 -66701308 - L1MC5 LINE L1 -1892 5916 5279 361 306 54 27 chr3 160823454 160823823 -66700755 - L1MC5 LINE L1 -1008 5138 4760 21 57 0 0 chr3 160823840 160823875 -66700703 + AT_rich Low_complexity Low_complexity 1 35 0 272 261 112 60 chr3 160824005 160824736 -66699842 - L1MC5 LINE L1 -2680 3466 2698 8797 176 14 4 chr3 160824737 160827176 -66697402 - L1PA14 LINE L1 0 7599 5145 7633 23 3 3 chr3 160827178 160828119 -66696459 + L1PA3 LINE L1 5212 6152 -3 10185 178 35 15 chr3 160828128 160828626 -66695952 - L1PA14 LINE L1 -2433 5151 4664 6905 64 0 2 chr3 160828626 160829940 -66694638 - L1PA7 LINE L1 -2 6152 4835 10185 178 35 15 chr3 160829940 160833009 -66691569 - L1PA14 LINE L1 -2920 4664 1512 1097 281 70 20 chr3 160833524 160833869 -66690709 + MLT1H1 LTR MaLR 7 368 -187 1507 208 55 39 chr3 160833870 160834102 -66690476 + L1M4 LINE L1 809 1036 -5506 2394 145 47 2 chr3 160834102 160834510 -66690068 - MSTA LTR MaLR -2 426 1 1507 208 55 39 chr3 160834510 160834767 -66689811 + L1M4 LINE L1 1036 1306 -5236 2118 107 10 7 chr3 160834820 160835109 -66689469 + AluSc SINE Alu 2 291 -18 784 219 32 62 chr3 160835109 160835447 -66689131 + L1M4 LINE L1 1494 1821 -4825 4548 164 14 10 chr3 160835448 160836251 -66688327 + L1 LINE L1 8 813 -6752 5494 89 97 102 chr3 160836251 160837787 -66686791 + pTR5 LTR ERV1 743 2426 -12 14281 144 32 9 chr3 160837787 160839912 -66684666 + L1 LINE L1 797 2989 -4576 2245 96 0 0 chr3 160839912 160840236 -66684342 + AluSc SINE Alu 1 324 0 14281 144 32 9 chr3 160840236 160840593 -66683985 + L1 LINE L1 2989 3336 -4229 22001 179 22 19 chr3 160840601 160841862 -66682716 + L1PA11 LINE L1 4 1260 -6352 188 67 33 0 chr3 160841862 160841892 -66682686 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 22001 179 22 19 chr3 160841892 160847107 -66677471 + L1PA11 LINE L1 1260 7591 -21 1913 140 16 15 chr3 160847116 160847688 -66676890 + L1 LINE L1 3333 3905 -3660 * 6420 185 17 4 chr3 160847685 160849036 -66675542 + L1 LINE L1 5383 6751 -814 583 284 11 0 chr3 160849042 160849232 -66675346 + L1PB1 LINE L1 6 197 -6666 * 13490 191 27 16 chr3 160849230 160850630 -66673948 + L1PB1 LINE L1 1393 2777 -4090 2422 75 0 0 chr3 160850630 160850922 -66673656 + AluY SINE Alu 1 292 -19 13490 191 27 16 chr3 160850922 160854517 -66670061 + L1PB1 LINE L1 2777 6512 -355 405 0 0 0 chr3 160854517 160854562 -66670016 + (TA)n Simple_repeat Simple_repeat 2 46 0 13490 191 27 16 chr3 160854562 160854922 -66669656 + L1PB1 LINE L1 6512 6867 0 23 33 0 0 chr3 160854922 160854952 -66669626 + AT_rich Low_complexity Low_complexity 1 30 0 6079 102 12 23 chr3 160854952 160855963 -66668615 + L1MA3 LINE L1 5298 6303 -2 834 239 26 4 chr3 160855984 160856210 -66668368 + L1MB7 LINE L1 1551 1781 -4603 757 195 32 0 chr3 160856208 160856393 -66668185 + L1MB7 LINE L1 3788 3978 -2404 * 7515 90 28 6 chr3 160856395 160856563 -66668015 + L1PA8 LINE L1 4248 4411 -1761 2726 19 0 28 chr3 160856563 160856882 -66667696 + AluYa5 SINE Alu 1 310 -1 7515 90 28 6 chr3 160856882 160858627 -66665951 + L1PA8 LINE L1 4411 6172 0 515 111 0 0 chr3 160858632 160858713 -66665865 - L1PA3 LINE L1 0 6155 6075 679 58 0 48 chr3 160858814 160858918 -66665660 + L1PA8 LINE L1 6074 6172 0 6207 38 0 0 chr3 160858923 160859662 -66664916 - L1PA4 LINE L1 0 6155 5417 4829 192 79 22 chr3 160859803 160862099 -66662479 + L1MB7 LINE L1 3965 6403 -17 197 259 165 24 chr3 160864037 160864122 -66660456 + MIR SINE MIR 45 141 -67 373 236 56 0 chr3 160864214 160864303 -66660275 - MIR SINE MIR -130 132 39 639 201 6 92 chr3 160865097 160865271 -66659307 - MER5B DNA MER1_type 0 178 20 190 301 48 0 chr3 160865260 160865343 -66659235 - L2 LINE L2 -629 2685 2599 * 516 291 83 21 chr3 160866597 160866838 -66657740 - MIR SINE MIR -1 261 6 962 216 72 48 chr3 160866921 160867390 -66657188 - MER90 LTR ERV1 0 614 82 628 279 73 16 chr3 160867413 160867660 -66656918 - MIR SINE MIR 0 262 2 480 282 92 0 chr3 160868636 160868778 -66655800 + MIR SINE MIR 98 252 -10 188 273 30 15 chr3 160869556 160869622 -66654956 - L2 LINE L2 -2 3311 3245 240 327 58 0 chr3 160870435 160870539 -66654039 - MER5A DNA MER1_type -79 110 1 453 208 167 17 chr3 160870566 160870686 -66653892 - MER5B DNA MER1_type -40 138 1 626 144 15 0 chr3 160870716 160870823 -66653755 + MER5A DNA MER1_type 4 112 -77 274 241 234 36 chr3 160870747 160870884 -66653694 - MER5A DNA MER1_type -23 166 3 * 318 328 0 17 chr3 160870896 160871012 -66653566 + MER5B DNA MER1_type 63 176 -2 341 308 145 37 chr3 160871018 160871232 -66653346 + MIR SINE MIR 13 249 -13 315 222 28 14 chr3 160872259 160872331 -66652247 + L2 LINE L2 3200 3272 0 434 248 263 0 chr3 160874721 160874858 -66649720 - MER5A DNA MER1_type -5 184 12 436 271 21 7 chr3 160875564 160875708 -66648870 + L1ME LINE L1 5627 5772 -349 420 20 0 0 chr3 160875819 160875868 -66648710 + (TA)n Simple_repeat Simple_repeat 2 50 0 288 284 74 12 chr3 160876689 160876770 -66647808 - L2 LINE L2 -38 3234 3149 540 115 86 72 chr3 160876855 160876994 -66647584 - MER53 DNA DNA 0 189 49 290 214 12 0 chr3 160877389 160877473 -66647105 + CT-rich Low_complexity Low_complexity 2 86 0 507 33 0 0 chr3 160877791 160877852 -66646726 + (CA)n Simple_repeat Simple_repeat 2 62 0 210 37 0 0 chr3 160877851 160877878 -66646700 + (GA)n Simple_repeat Simple_repeat 2 28 0 * 233 362 71 31 chr3 160878266 160878393 -66646185 + L2 LINE L2 3137 3268 -4 218 280 32 0 chr3 160879181 160879283 -66645295 - MIR SINE MIR -58 204 97 189 196 0 65 chr3 160879284 160879330 -66645248 - MIR SINE MIR -65 143 101 200 321 80 18 chr3 160879564 160879676 -66644902 + L2 LINE L2 3186 3304 -9 1778 191 79 33 chr3 160879883 160880251 -66644327 - MLT1D LTR MaLR 0 505 108 1914 157 0 10 chr3 160880251 160880551 -66644027 + AluSx SINE Alu 1 297 -15 1778 191 79 33 chr3 160880551 160880665 -66643913 - MLT1D LTR MaLR -397 108 1 326 308 95 86 chr3 160881547 160881824 -66642754 - L1MB8 LINE L1 -249 5929 5647 1952 156 44 47 chr3 160881824 160882209 -66642369 - MLT1B LTR MaLR -3 387 4 326 308 95 86 chr3 160882209 160882246 -66642332 - L1MB8 LINE L1 -531 5647 5612 525 271 59 82 chr3 160882275 160882949 -66641629 - L1MB8 LINE L1 -618 5548 4860 200 86 29 0 chr3 160882949 160882984 -66641594 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2424 42 0 0 chr3 160882986 160883271 -66641307 - AluY SINE Alu -26 285 1 525 271 59 82 chr3 160883271 160883610 -66640968 - L1MB8 LINE L1 -1307 4859 4541 944 187 59 5 chr3 160883704 160883907 -66640671 + L1MA9 LINE L1 6057 6270 -42 1102 271 134 25 chr3 160884091 160884800 -66639778 - L1MB8 LINE L1 -1923 4223 3438 299 288 121 0 chr3 160885965 160886097 -66638481 + MIR SINE MIR 57 204 -58 332 304 76 13 chr3 160886686 160886844 -66637734 - L3 LINE CR1 -132 1445 1278 191 262 115 0 chr3 160887255 160887316 -66637262 + L2 LINE L2 3169 3236 -36 240 35 0 0 chr3 160888191 160888220 -66636358 + (TG)n Simple_repeat Simple_repeat 2 30 0 500 347 117 11 chr3 160888526 160889109 -66635469 - L2 LINE L2 -62 3251 2597 895 199 256 27 chr3 160889349 160889909 -66634669 - LTR50 LTR ERVL -17 778 1 216 309 59 0 chr3 160889911 160889979 -66634599 - L2 LINE L2 -1029 2285 2214 1875 153 134 24 chr3 160890090 160890470 -66634108 - MSTB LTR MaLR -2 424 3 9458 175 13 11 chr3 160890481 160892128 -66632450 - MSTB-int LTR MaLR 0 1651 2 2079 180 45 38 chr3 160892129 160892552 -66632026 - MSTB LTR MaLR 0 426 1 466 294 25 19 chr3 160892628 160892788 -66631790 + MER5B DNA MER1_type 1 161 -17 1865 179 29 61 chr3 160893067 160893476 -66631102 + MSTD LTR MaLR 1 396 0 273 151 0 0 chr3 160893866 160893919 -66630659 + (CA)n Simple_repeat Simple_repeat 2 54 0 207 69 0 0 chr3 160895048 160895077 -66629501 + (TAA)n Simple_repeat Simple_repeat 1 29 0 825 178 6 29 chr3 160895090 160895264 -66629314 - MIR SINE MIR -28 234 65 227 275 14 14 chr3 160895589 160895658 -66628920 - L2 LINE L2 -20 3252 3184 28 0 0 0 chr3 160895827 160895855 -66628723 + AT_rich Low_complexity Low_complexity 1 28 0 202 317 54 83 chr3 160896281 160896486 -66628092 + MIR SINE MIR 48 246 -16 1981 194 109 2 chr3 160897527 160897940 -66626638 + MSTB2 LTR MaLR 1 457 0 2208 137 0 0 chr3 160898737 160899037 -66625541 + AluSx SINE Alu 1 300 -12 198 0 0 0 chr3 160899114 160899136 -66625442 + (CTG)n Simple_repeat Simple_repeat 3 24 0 532 29 0 0 chr3 160899188 160899256 -66625322 + L1PA14 LINE L1 6093 6160 -1 295 281 64 41 chr3 160899564 160899735 -66624843 + L1ME LINE L1 5619 5793 -328 1981 164 0 0 chr3 160899748 160900046 -66624532 + AluJb SINE Alu 1 298 -14 3260 119 61 99 chr3 160900168 160900804 -66623774 + LTR9 LTR ERV1 1 612 0 348 250 0 22 chr3 160900896 160900988 -66623590 + L1MC4 LINE L1 6614 6703 -1339 590 207 6 0 chr3 160900993 160901157 -66623421 + (TA)n Simple_repeat Simple_repeat 1 165 0 231 167 50 0 chr3 160901167 160901227 -66623351 - LTR66 LTR ERVL -171 439 377 276 240 27 13 chr3 160901615 160901690 -66622888 + MLT1I LTR MaLR 70 145 -264 293 217 37 6 chr3 160902666 160902827 -66621751 + (TA)n Simple_repeat Simple_repeat 1 166 0 266 286 54 36 chr3 160903195 160903307 -66621271 + MIR SINE MIR 21 134 -74 210 248 6 119 chr3 160903392 160903487 -66621091 + MIR SINE MIR 47 115 -137 2262 98 7 0 chr3 160903487 160903773 -66620805 - AluSc SINE Alu -21 288 1 210 248 6 119 chr3 160903773 160903831 -66620747 + MIR SINE MIR 115 178 -74 495 231 48 20 chr3 160903844 160903991 -66620587 - MLT1G1 LTR MaLR -7 548 398 182 194 32 11 chr3 160904080 160904173 -66620405 + CT-rich Low_complexity Low_complexity 2 96 0 798 210 64 38 chr3 160904210 160904505 -66620073 - MLT1G1 LTR MaLR -322 268 1 631 285 32 14 chr3 160904937 160905158 -66619420 - MLT1I LTR MaLR -184 225 1 737 263 48 0 chr3 160905568 160905754 -66618824 + MIR SINE MIR 35 229 -33 2119 130 0 0 chr3 160906179 160906471 -66618107 - AluSg SINE Alu -18 292 1 219 69 0 0 chr3 160906888 160906917 -66617661 + (CA)n Simple_repeat Simple_repeat 2 30 0 227 302 0 0 chr3 160907087 160907140 -66617438 + MLT1K LTR MaLR 142 194 -394 281 229 45 123 chr3 160907278 160907457 -66617121 + MLT1K LTR MaLR 312 476 -112 3036 174 30 16 chr3 160907459 160908016 -66616562 + MLT1F1 LTR MaLR 3 567 0 226 338 30 99 chr3 160908113 160908376 -66616202 + L2 LINE L2 2966 3210 -62 235 231 19 39 chr3 160908446 160908498 -66616080 - MER81 DNA DNA -58 56 6 1409 223 48 39 chr3 160908509 160908922 -66615656 + LTR16A1 LTR ERVL 41 457 0 201 74 0 0 chr3 160908934 160908961 -66615617 + (TGAG)n Simple_repeat Simple_repeat 1 27 0 278 331 39 8 chr3 160908971 160909101 -66615477 + MIR SINE MIR 98 231 -31 326 279 39 45 chr3 160909922 160910130 -66614448 + MIR SINE MIR 5 211 -51 1051 222 152 64 chr3 160910433 160910919 -66613659 - MLT1F LTR MaLR -13 529 1 392 315 49 0 chr3 160910955 160911139 -66613439 - MIR SINE MIR -21 241 49 488 297 81 0 chr3 160912999 160913184 -66611394 + MIR SINE MIR 57 256 -6 334 201 220 8 chr3 160913332 160913451 -66611127 - MER63 DNA MER1_type -273 788 6 2533 62 3 0 chr3 160913714 160914022 -66610556 + AluY SINE Alu 3 311 0 28 29 0 0 chr3 160914129 160914164 -66610414 + AT_rich Low_complexity Low_complexity 1 35 0 590 229 0 0 chr3 160914256 160914374 -66610204 - MIR SINE MIR -36 226 109 289 261 204 42 chr3 160915655 160915797 -66608781 - L1MC/D LINE L1 -2075 5733 5569 1266 98 0 0 chr3 160915814 160915978 -66608600 + AluSg/x SINE Alu 132 295 -17 276 234 39 0 chr3 160916018 160916095 -66608483 - L1MC/D LINE L1 -1558 4588 4509 539 287 35 10 chr3 160916369 160916571 -66608007 - MIR SINE MIR -4 258 52 438 314 34 25 chr3 160917142 160917378 -66607200 + LTR16C LTR ERVL 237 474 -17 279 173 0 0 chr3 160917529 160917581 -66606997 + CT-rich Low_complexity Low_complexity 3 54 0 261 314 119 8 chr3 160917918 160918036 -66606542 + MIR SINE MIR 16 146 -62 240 297 25 2 chr3 160918228 160918341 -66606237 - MIR SINE MIR -66 142 40 906 176 29 12 chr3 160918536 160918706 -66605872 - MLT1A1 LTR MaLR -1 364 192 2022 189 22 75 chr3 160918806 160919339 -66605239 - MLT1D LTR MaLR 0 505 1 1886 129 53 44 chr3 160919604 160919946 -66604632 + THE1C LTR MaLR 31 375 0 1922 128 4 0 chr3 160920207 160920481 -66604097 - AluY SINE Alu -14 297 23 477 277 87 5 chr3 160921134 160921318 -66603260 + MIR SINE MIR 64 262 0 191 257 100 0 chr3 160922349 160922419 -66602159 - L2 LINE L2 -50 3222 3146 210 319 14 0 chr3 160922632 160922701 -66601877 - L2 LINE L2 0 3313 3244 13320 67 9 9 chr3 160924466 160926261 -66598317 + L1P LINE L1 2583 4377 -1769 522 322 4 50 chr3 160926393 160926520 -66598058 + ERVL LTR ERVL 1499 1611 -4153 1960 152 3 0 chr3 160926520 160926816 -66597762 - AluSq SINE Alu -16 297 1 522 322 4 50 chr3 160926816 160926930 -66597648 + ERVL LTR ERVL 1611 1729 -4035 2090 97 7 4 chr3 160926976 160927299 -66597279 + AluSc SINE Alu 1 324 0 1960 106 115 6 chr3 160927299 160927656 -66596922 + L1M1 LINE L1 2941 3336 -4229 14883 190 19 17 chr3 160927664 160928925 -66595653 + L1PA12 LINE L1 4 1262 -6322 188 67 33 0 chr3 160928925 160928955 -66595623 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 14883 190 19 17 chr3 160928955 160932334 -66592244 + L1PA12 LINE L1 1262 5743 -1841 1327 147 0 0 chr3 160932441 160932639 -66591939 + L1PB1 LINE L1 5954 6151 0 6583 104 14 25 chr3 160932643 160933682 -66590896 + L1MA3 LINE L1 5276 6305 0 898 232 25 21 chr3 160933699 160933940 -66590638 + L1M4c LINE L1 1551 1792 -4592 838 198 32 0 chr3 160933923 160934110 -66590468 + L1M4c LINE L1 3788 3980 -2402 * 8146 88 10 0 chr3 160934110 160934278 -66590300 + L1PA7 LINE L1 4248 4413 -1741 2441 57 0 66 chr3 160934278 160934611 -66589967 + AluY SINE Alu 1 311 0 8146 88 10 0 chr3 160934611 160936347 -66588231 + L1PA7 LINE L1 4413 6152 -2 1894 229 77 10 chr3 160936348 160936845 -66587733 + L1PA11 LINE L1 3184 3713 -2433 4323 95 10 27 chr3 160936854 160937526 -66587052 - L1PA3 LINE L1 -3 6152 5492 9141 149 18 9 chr3 160937670 160940141 -66584437 + L1PA11 LINE L1 3665 6153 -21 2087 169 13 32 chr3 160940150 160941029 -66583549 + L1M1 LINE L1 3333 5679 -1886 371 236 56 0 chr3 160942083 160942172 -66582406 + MIR SINE MIR 39 132 -130 202 259 165 24 chr3 160942264 160942349 -66582229 - MIR SINE MIR -67 141 45 248 299 13 96 chr3 160943611 160943768 -66580810 + MER21A LTR ERV1 639 782 -149 467 294 130 0 chr3 160944011 160944188 -66580390 - MIR SINE MIR -5 257 58 1526 254 11 11 chr3 160944440 160944795 -66579783 - MER4D LTR ERV1 0 903 549 1853 126 15 0 chr3 160944852 160945123 -66579455 - MER49 LTR ERV1 -640 283 9 8067 175 21 1 chr3 160945511 160946853 -66577725 - L1M1 LINE L1 -5098 2467 1099 639 170 45 0 chr3 160946850 160946962 -66577616 - L1M1 LINE L1 -7432 133 17 * 954 202 26 0 chr3 160946962 160947190 -66577388 - MER33 DNA MER1_type -30 294 61 203 333 133 7 chr3 160947337 160947472 -66577106 + L3 LINE CR1 1425 1576 -1 415 248 10 10 chr3 160948272 160948373 -66576205 - LTR16B LTR ERVL 0 464 364 838 176 28 28 chr3 160948381 160948563 -66576015 + MER53 DNA DNA 2 183 -6 1074 158 46 15 chr3 160948643 160948839 -66575739 + MLT1D LTR MaLR 2 203 -302 22 35 0 0 chr3 160949163 160949192 -66575386 + AT_rich Low_complexity Low_complexity 1 29 0 304 310 49 35 chr3 160950045 160950187 -66574391 + MLT1J LTR MaLR 35 178 -333 411 281 103 35 chr3 160950346 160950549 -66574029 - L2 LINE L2 -617 2697 2481 1856 138 7 10 chr3 160950817 160951122 -66573456 + AluSq SINE Alu 10 313 0 652 114 9 9 chr3 160951124 160951238 -66573340 + (GGAA)n Simple_repeat Simple_repeat 4 117 0 278 363 0 9 chr3 160951369 160951482 -66573096 + L1MEd LINE L1 524 635 -5737 445 303 27 65 chr3 160952726 160953063 -66571515 - L1MCc LINE L1 -5956 467 144 347 224 0 40 chr3 160953068 160953144 -66571434 - Tigger5 DNA MER2_type 0 2323 2251 279 270 0 14 chr3 160953159 160953233 -66571345 - Tigger5 DNA MER2_type 0 2323 2251 230 224 0 20 chr3 160953201 160953250 -66571328 - Tigger5 DNA MER2_type -2268 55 8 * 277 247 32 0 chr3 160953260 160953353 -66571225 - L1MCc LINE L1 -6286 137 42 362 259 57 41 chr3 160953415 160953608 -66570970 - L1ME3 LINE L1 -174 5988 5787 706 268 125 24 chr3 160955868 160956163 -66568415 + L1MC4a LINE L1 6558 6882 -926 277 174 22 87 chr3 160956173 160956208 -66568370 + L1MEd LINE L1 1049 1085 -5299 2165 154 0 0 chr3 160956208 160956520 -66568058 + AluSx SINE Alu 1 312 0 277 174 22 87 chr3 160956520 160956576 -66568002 + L1MEd LINE L1 1085 1134 -5250 3941 199 38 15 chr3 160956928 160957873 -66566705 + L1 LINE L1 4150 5116 -1030 2031 145 0 0 chr3 160958460 160958757 -66565821 - AluJb SINE Alu -15 297 1 221 342 19 71 chr3 160958760 160958915 -66565663 + L2 LINE L2 2925 3071 -201 703 180 0 8 chr3 160959426 160959554 -66565024 - L1M2 LINE L1 -571 5741 5615 1097 153 88 0 chr3 160959554 160959765 -66564813 + L1MA7 LINE L1 6051 6285 -6 210 221 35 81 chr3 160959783 160959869 -66564709 - MIR SINE MIR -156 106 25 186 191 0 0 chr3 160960683 160960725 -66563853 + T-rich Low_complexity Low_complexity 1 42 0 221 314 29 0 chr3 160961043 160961113 -66563465 + MIR SINE MIR 36 107 -101 511 296 60 41 chr3 160961349 160961818 -66562760 + L1ME LINE L1 5144 5623 -547 3836 163 64 19 chr3 160962001 160963430 -66561148 + L1M1 LINE L1 2484 4164 -3401 668 344 19 5 chr3 160964284 160964501 -66560077 - HERV16 LTR ERVL -1901 3095 2907 289 307 105 0 chr3 160965122 160965275 -66559303 + MLT1I LTR MaLR 19 187 -222 237 200 44 0 chr3 160965347 160965392 -66559186 - MIR SINE MIR -76 132 86 354 322 29 46 chr3 160965705 160965879 -66558699 + MIR SINE MIR 20 190 -72 349 250 197 23 chr3 160967125 160967257 -66557321 - MIR SINE MIR -21 241 87 1165 119 64 50 chr3 160967621 160967839 -66556739 - AluJo SINE Alu -5 307 87 2065 115 7 0 chr3 160968027 160968315 -66556263 - AluSx SINE Alu -22 290 1 749 187 111 42 chr3 160970142 160970379 -66554199 + MER33 DNA MER1_type 1 241 -83 2243 107 3 16 chr3 160970379 160970696 -66553882 - AluSq SINE Alu 0 313 1 2338 86 0 0 chr3 160971309 160971599 -66552979 - AluSq SINE Alu -19 294 5 281 206 15 44 chr3 160972226 160972294 -66552284 + L2 LINE L2 3248 3313 0 365 258 22 0 chr3 160972297 160972386 -66552192 + MIR SINE MIR 82 172 -90 444 118 0 0 chr3 160972733 160972801 -66551777 + (TATG)n Simple_repeat Simple_repeat 2 69 0 873 169 0 20 chr3 160972803 160972951 -66551627 - FRAM SINE Alu -30 146 2 1162 149 11 0 chr3 160972955 160973129 -66551449 - AluSg/x SINE Alu -7 305 130 2223 200 31 27 chr3 160973776 160974549 -66550029 - L1P5 LINE L1 -692 5459 4694 2130 117 3 22 chr3 160975010 160975326 -66549252 + AluSg SINE Alu 1 310 0 1198 254 125 15 chr3 160975401 160975787 -66548791 - MLT1D LTR MaLR -12 481 67 427 127 0 0 chr3 161175925 161175988 -66348590 + Alu SINE Alu 238 300 -12 4304 171 17 51 chr3 161176053 161176756 -66347822 - L1MB7 LINE L1 0 6184 5540 2608 40 0 0 chr3 161176756 161177055 -66347523 - AluY SINE Alu -12 299 1 4304 171 17 51 chr3 161177055 161177416 -66347162 - L1MB7 LINE L1 -644 5540 5168 276 310 60 45 chr3 161177594 161177865 -66346713 + L1MC/D LINE L1 5617 5887 -339 4027 141 35 0 chr3 161177901 161178526 -66346052 - HSMAR2 DNA Mariner -13 1289 643 1485 252 141 9 chr3 161178647 161179278 -66345300 - L2 LINE L2 -1407 1907 1194 224 212 159 26 chr3 161179666 161179779 -66344799 - L2 LINE L2 -273 2999 2872 186 318 24 0 chr3 161179817 161179902 -66344676 + L2 LINE L2 2882 2968 -304 408 161 29 4 chr3 161180076 161180209 -66344369 + MER53 DNA DNA 1 189 0 222 203 40 0 chr3 161180459 161180533 -66344045 + (TA)n Simple_repeat Simple_repeat 2 78 0 503 319 42 55 chr3 161180822 161181349 -66343229 - L1M4 LINE L1 -3480 2666 2147 23 0 0 0 chr3 161182084 161182107 -66342471 + AT_rich Low_complexity Low_complexity 1 23 0 285 242 258 8 chr3 161183422 161183546 -66341032 - L2 LINE L2 -1 3312 3158 246 222 0 0 chr3 161183624 161183678 -66340900 - MIR3 SINE MIR -6 202 149 1821 317 89 16 chr3 161183807 161184789 -66339789 + L2 LINE L2 1706 2758 -556 385 286 45 52 chr3 161185836 161185990 -66338588 + MIR3 SINE MIR 35 187 -21 312 132 0 19 chr3 161186622 161186675 -66337903 + HSMAR2 DNA Mariner 3 54 -1248 12058 112 28 55 chr3 161186679 161189303 -66335275 + L1P3 LINE L1 8 2656 -3805 1973 114 4 4 chr3 161189403 161189675 -66334903 - AluSx SINE Alu -40 272 1 625 176 0 21 chr3 161189719 161189861 -66334717 - L1MC4 LINE L1 0 8042 7904 2382 219 66 58 chr3 161189928 161190728 -66333850 - L1MC4 LINE L1 -132 7910 7104 1064 312 83 26 chr3 161190732 161191437 -66333141 - MERVL LTR ERVL -1149 4336 3620 5922 79 95 4 chr3 161191439 161192196 -66332382 - LTR12 LTR ERV1 0 826 1 5938 85 13 2 chr3 161192196 161192984 -66331594 - HERV9 LTR ERV1 0 8399 7604 2557 149 188 57 chr3 161192963 161193759 -66330819 - HERV9 LTR ERV1 -5156 1740 840 * 746 90 18 0 chr3 161193760 161193871 -66330707 - HERV9 LTR ERV1 -3455 4944 4832 290 308 89 7 chr3 161194623 161194769 -66329809 + MIR SINE MIR 59 216 -46 292 143 0 0 chr3 161194809 161194853 -66329725 - MER33 DNA MER1_type -10 353 309 2307 102 16 0 chr3 161194853 161195158 -66329420 - AluY SINE Alu -1 310 1 3105 183 9 32 chr3 161195186 161195743 -66328835 + MLT2B3 LTR ERVL 1 544 -10 945 168 127 0 chr3 161195764 161195984 -66328594 - MER33 DNA MER1_type -72 252 5 6835 161 13 0 chr3 161196597 161197755 -66326823 - L1 LINE L1 -1361 4785 3613 16189 140 11 6 chr3 161197765 161200207 -66324371 - L1M1 LINE L1 -5111 2454 24 191 268 24 49 chr3 161200413 161200495 -66324083 + L3 LINE CR1 1489 1568 -9 897 216 10 15 chr3 161201054 161201258 -66323320 + MIR SINE MIR 58 260 -2 2245 98 7 7 chr3 161201261 161201558 -66323020 - AluSq SINE Alu -16 297 1 27 0 0 0 chr3 161201561 161201588 -66322990 + AT_rich Low_complexity Low_complexity 1 27 0 301 336 64 18 chr3 161202100 161202320 -66322258 - MIR SINE MIR -11 251 22 230 359 83 0 chr3 161202744 161202900 -66321678 - MIR SINE MIR -6 256 88 423 275 42 28 chr3 161202934 161203076 -66321502 - L2 LINE L2 -1 3312 3169 2401 137 19 92 chr3 161203110 161203260 -66321318 - Tigger2 DNA MER2_type 0 2718 2559 2113 151 0 0 chr3 161203260 161203564 -66321014 + AluSx SINE Alu 1 304 -8 2401 137 19 92 chr3 161203564 161203894 -66320684 - Tigger2 DNA MER2_type -159 2559 2273 437 159 0 0 chr3 161203884 161203953 -66320625 - Tigger2 DNA MER2_type -2649 69 1 * 1157 79 0 79 chr3 161204079 161204256 -66320322 - HERV9 LTR ERV1 -4157 4242 4080 15160 103 16 11 chr3 161204263 161207302 -66317276 - HERV9 LTR ERV1 -1995 443 13 6456 71 13 61 chr3 161207302 161208170 -66316408 - LTR12 LTR ERV1 0 826 1 15160 103 16 11 chr3 161208170 161208184 -66316394 - HERV9 LTR ERV1 -2425 13 1 1846 306 82 38 chr3 161208373 161209268 -66315310 - ERVL LTR ERVL -2376 3388 2455 677 176 8 0 chr3 161209278 161209397 -66315181 - MER3 DNA MER1_type -3 206 87 6420 125 55 3 chr3 161209498 161210683 -66313895 + L1MA3 LINE L1 5042 6290 -15 284 273 182 7 chr3 161211121 161211275 -66313303 - MIR SINE MIR -41 221 41 378 272 51 59 chr3 161211739 161211993 -66312585 + L2 LINE L2 2934 3185 -87 375 69 0 139 chr3 161211998 161212046 -66312532 - MSTB LTR MaLR 0 426 373 192 40 0 0 chr3 161212046 161212071 -66312507 + (TTAA)n Simple_repeat Simple_repeat 3 27 0 8834 158 12 1 chr3 161212071 161214280 -66310298 - L1PA13 LINE L1 -8 6155 3921 375 69 0 139 chr3 161214280 161214302 -66310276 - MSTB LTR MaLR -51 375 365 435 216 266 7 chr3 161214666 161214805 -66309773 + MER5A DNA MER1_type 13 187 -2 230 261 31 46 chr3 161215347 161215412 -66309166 - L2 LINE L2 -18 3254 3191 811 250 95 84 chr3 161216448 161216563 -66308015 + LTR16A1 LTR ERVL 1 113 -344 2376 65 3 23 chr3 161216563 161216869 -66307709 - AluY SINE Alu -11 300 1 811 250 95 84 chr3 161216869 161217205 -66307373 + LTR16A1 LTR ERVL 113 457 0 5043 77 25 12 chr3 161217764 161218412 -66306166 + L1PA10 LINE L1 5513 6168 0 528 261 52 108 chr3 161218566 161218853 -66305725 - L1ME1 LINE L1 -5 6161 5891 853 184 37 6 chr3 161218884 161219047 -66305531 - L1PA16 LINE L1 -2 6164 5997 566 123 0 0 chr3 161219056 161219137 -66305441 + L1PA15 LINE L1 5835 5915 -251 302 111 0 0 chr3 161219193 161219238 -66305340 + L1PA15 LINE L1 5916 5960 -205 473 171 0 81 chr3 161219750 161219861 -66304717 - L1ME2 LINE L1 -242 5922 5818 * 1131 176 82 29 chr3 161219860 161220105 -66304473 - L1MD1 LINE L1 0 6242 5985 * 6998 134 16 22 chr3 161220098 161220332 -66304246 - L1MC1 LINE L1 0 6333 6099 2683 176 6 45 chr3 161220332 161220837 -66303741 + MER66B LTR ERV1 2 486 0 6998 134 16 22 chr3 161220837 161221939 -66302639 - L1MC1 LINE L1 -234 6099 5006 337 298 57 0 chr3 161222034 161222158 -66302420 - L1ME4a LINE L1 -197 5924 5794 765 134 4 14 chr3 161222295 161222534 -66302044 - MER50 LTR ERV1 -139 595 323 12239 177 30 35 chr3 161222753 161223564 -66301014 - L1PB1 LINE L1 0 6867 6053 2158 102 0 7 chr3 161223564 161223848 -66300730 + AluSq SINE Alu 7 288 -25 12239 177 30 35 chr3 161223848 161224786 -66299792 - L1PB1 LINE L1 -814 6053 5112 196 0 118 0 chr3 161224786 161224820 -66299758 + (TTTG)n Simple_repeat Simple_repeat 3 40 0 12239 177 30 35 chr3 161224820 161229262 -66295316 - L1PB1 LINE L1 -1755 5112 694 1697 98 81 34 chr3 161229275 161229572 -66295006 - MER50 LTR ERV1 -410 324 14 255 61 0 0 chr3 161229725 161229758 -66294820 + (TG)n Simple_repeat Simple_repeat 1 33 0 248 306 86 27 chr3 161229943 161230129 -66294449 - Charlie8 DNA MER1_type -2220 197 1 266 196 18 134 chr3 161230171 161230283 -66294295 + MER102b DNA MER1_type 216 314 -27 745 260 20 15 chr3 161230813 161231013 -66293565 + MER63A DNA MER1_type 10 210 0 1860 266 120 15 chr3 161231061 161231603 -66292975 - MER115 DNA AcHobo 0 693 95 1713 90 55 7 chr3 161231706 161231995 -66292583 - HSMAR2 DNA Mariner -959 343 41 21 36 0 0 chr3 161232013 161232041 -66292537 + AT_rich Low_complexity Low_complexity 1 28 0 19762 88 14 10 chr3 161232108 161232966 -66291612 - L1PA7 LINE L1 0 6154 5300 2176 124 0 34 chr3 161232966 161233289 -66291289 - AluSq SINE Alu -1 312 1 19762 88 14 10 chr3 161233289 161236112 -66288466 - L1PA7 LINE L1 -854 5300 2461 1215 100 0 0 chr3 161236212 161236362 -66288216 - AluSq/x SINE Alu -162 150 1 1158 184 118 10 chr3 161236424 161236728 -66287850 + MER58B DNA MER1_type 1 337 -4 5356 109 29 8 chr3 161236813 161237577 -66287001 + LTR17 LTR ERV1 1 780 0 1269 182 39 24 chr3 161237896 161238231 -66286347 - MER3 DNA MER1_type 0 2624 2285 258 197 28 0 chr3 161238750 161238821 -66285757 - MER3 DNA MER1_type 0 2305 2233 625 164 0 0 chr3 161238828 161238944 -66285634 - MER3 DNA MER1_type -87 122 54 7288 124 36 9 chr3 161239104 161239917 -66284661 - Tigger3b DNA MER2_type -1797 1231 374 1907 129 21 11 chr3 161239917 161240197 -66284381 + AluSx SINE Alu 16 298 -14 7288 124 36 9 chr3 161240197 161240581 -66283997 - Tigger3b DNA MER2_type -2654 374 2 1329 277 90 21 chr3 161240597 161241120 -66283458 - L2 LINE L2 -526 2788 2230 886 245 132 20 chr3 161241121 161241476 -66283102 + MLT2C1 LTR ERVL 3 397 0 1416 120 46 0 chr3 161241522 161241739 -66282839 - MER30 DNA MER1_type -3 227 1 380 250 182 0 chr3 161241743 161241875 -66282703 - L2 LINE L2 -1108 2206 2051 202 296 0 0 chr3 161241894 161241938 -66282640 - L2 LINE L2 -1389 1925 1882 668 294 46 0 chr3 161242128 161242346 -66282232 + MIR SINE MIR 9 236 -26 246 226 78 39 chr3 161242333 161242435 -66282143 - MIR SINE MIR -91 171 66 * 2308 145 62 2 chr3 161242821 161243241 -66281337 - MER65A LTR ERV1 0 445 1 296 269 13 0 chr3 161243725 161243803 -66280775 + MIR SINE MIR 78 156 -106 * 721 258 62 21 chr3 161243794 161243988 -66280590 - MIR SINE MIR 0 262 61 2131 126 0 10 chr3 161244157 161244451 -66280127 + AluSx SINE Alu 1 291 -21 848 265 64 28 chr3 161244627 161244876 -66279702 - MIR SINE MIR 0 262 5 2133 100 31 0 chr3 161245107 161245398 -66279180 - AluSq SINE Alu -13 300 1 3172 143 25 75 chr3 161245426 161245468 -66279110 + L1MB3 LINE L1 5321 5364 -819 258 32 0 0 chr3 161245468 161245499 -66279079 + (TA)n Simple_repeat Simple_repeat 2 32 0 3172 143 25 75 chr3 161245499 161245803 -66278775 + L1MB3 LINE L1 5364 5682 -501 1568 203 34 0 chr3 161245803 161246099 -66278479 - AluJb SINE Alu -6 306 1 3172 143 25 75 chr3 161246099 161246203 -66278375 + L1MB3 LINE L1 5682 5790 -393 1966 139 67 0 chr3 161246203 161246562 -66278016 + MLT1B LTR MaLR 4 386 -4 3172 143 25 75 chr3 161246562 161246824 -66277754 + L1MB3 LINE L1 5790 5999 -184 517 125 0 0 chr3 161246850 161246930 -66277648 + AluJ/FRAM SINE Alu 225 304 -8 511 247 134 5 chr3 161246938 161247132 -66277446 - LTR33A LTR ERVL -8 515 297 321 259 167 41 chr3 161247269 161247414 -66277164 - LTR33A LTR ERVL -346 198 38 478 349 57 14 chr3 161247576 161247857 -66276721 + MLT1K LTR MaLR 91 383 -205 232 247 34 45 chr3 161247971 161248060 -66276518 - L3 LINE CR1 -671 906 819 514 280 22 16 chr3 161248423 161248605 -66275973 - MLT1K LTR MaLR -11 577 395 511 256 34 23 chr3 161248827 161249003 -66275575 - MER97a DNA MER1_type? -715 179 2 302 285 46 46 chr3 161249696 161249826 -66274752 - MIR SINE MIR -110 152 23 255 177 406 10 chr3 161251881 161251977 -66272601 - MIR SINE MIR -25 237 104 245 118 59 0 chr3 161252522 161252573 -66272005 + MLT1F LTR MaLR 1 54 -488 209 120 40 0 chr3 161252606 161252656 -66271922 + (TCTCTG)n Simple_repeat Simple_repeat 3 54 0 521 179 0 63 chr3 161252673 161252863 -66271715 + CT-rich Low_complexity Low_complexity 1 178 0 1101 211 136 7 chr3 161252881 161253175 -66271403 + MLT1F LTR MaLR 174 505 -37 408 293 114 93 chr3 161253280 161253614 -66270964 + L2 LINE L2 2912 3252 -20 419 303 38 33 chr3 161254630 161254841 -66269737 - L1M4 LINE L1 -913 5233 5022 356 216 0 10 chr3 161254841 161254855 -66269723 - L1MA10 LINE L1 -1 6333 6320 1551 201 74 40 chr3 161254855 161254994 -66269584 - L1ME1 LINE L1 -5 6161 6028 2285 104 3 0 chr3 161254994 161255291 -66269287 + AluSq SINE Alu 2 299 -14 1551 201 74 40 chr3 161255291 161255598 -66268980 - L1ME1 LINE L1 -138 6028 5700 1737 163 9 15 chr3 161255641 161255966 -66268612 - L1MC1 LINE L1 0 6333 6011 5060 138 32 11 chr3 161255966 161256940 -66267638 + L1PA16 LINE L1 5173 6151 -15 1877 138 3 12 chr3 161256981 161257308 -66267270 - L1MC1 LINE L1 -308 6025 5702 2766 129 55 2 chr3 161257408 161257939 -66266639 - L1MC/D LINE L1 -599 5745 5186 232 264 14 57 chr3 161257957 161258097 -66266481 - L1P LINE L1 -1134 5012 4879 305 262 136 0 chr3 161259336 161259439 -66265139 + MIR SINE MIR 117 233 -29 1833 96 4 12 chr3 161259564 161259842 -66264736 - AluSg SINE Alu 0 310 35 1226 191 16 19 chr3 161260031 161260288 -66264290 + MLT1B LTR MaLR 134 389 -1 536 288 183 14 chr3 161260290 161260575 -66264003 + L2 LINE L2 2974 3306 -7 2340 220 36 8 chr3 161261384 161262312 -66262266 - L1MEc LINE L1 -3327 2888 1968 2142 246 104 24 chr3 161262317 161262987 -66261591 - L1MEc LINE L1 -5547 849 126 354 184 0 0 chr3 161262987 161263063 -66261515 + (TA)n Simple_repeat Simple_repeat 2 77 0 1802 132 11 21 chr3 161263071 161263358 -66261220 - AluJo SINE Alu 0 312 29 250 232 70 99 chr3 161264106 161264248 -66260330 + HAL1 LINE L1 1329 1466 -1041 343 298 48 60 chr3 161264274 161264522 -66260056 + HAL1 LINE L1 2240 2484 -23 690 144 0 30 chr3 161264532 161264664 -66259914 - L1MB4 LINE L1 0 6180 6053 1171 118 11 72 chr3 161264764 161265026 -66259552 - L1MB4 LINE L1 -637 5543 5298 180 0 0 0 chr3 161265305 161265325 -66259253 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 642 245 176 0 chr3 161265739 161265927 -66258651 + MIR SINE MIR 4 224 -38 31 68 0 0 chr3 161266211 161266270 -66258308 + AT_rich Low_complexity Low_complexity 1 59 0 3096 156 34 13 chr3 161267203 161267817 -66256761 + L1MB7 LINE L1 5550 6176 -8 475 275 38 31 chr3 161267963 161268123 -66256455 + MIR SINE MIR 31 191 -71 519 233 10 0 chr3 161268135 161268238 -66256340 + FLAM_A SINE Alu 1 104 -38 223 241 86 17 chr3 161268295 161268353 -66256225 + MIR SINE MIR 201 262 0 521 155 0 0 chr3 161268359 161268443 -66256135 - AluJo SINE Alu -19 293 210 488 169 0 11 chr3 161268452 161268541 -66256037 - AluJo SINE Alu -182 130 43 424 230 0 26 chr3 161268651 161268764 -66255814 + L1ME1 LINE L1 6052 6161 -5 383 235 61 17 chr3 161269614 161269729 -66254849 + MIR SINE MIR 139 258 -4 1501 201 23 39 chr3 161269879 161270007 -66254571 + AluJb SINE Alu 1 130 -182 2227 119 0 3 chr3 161270007 161270317 -66254261 + AluSq SINE Alu 1 309 -4 1501 201 23 39 chr3 161270317 161270527 -66254051 + AluJb SINE Alu 130 312 0 1970 126 0 42 chr3 161270530 161270839 -66253739 + AluSx SINE Alu 1 296 -16 497 323 139 19 chr3 161271103 161271383 -66253195 + HAL1 LINE L1 94 430 -2077 390 69 0 0 chr3 161271383 161271441 -66253137 + (CA)n Simple_repeat Simple_repeat 2 59 0 497 323 139 19 chr3 161271441 161271528 -66253050 + HAL1 LINE L1 430 505 -2002 258 211 28 14 chr3 161271584 161271655 -66252923 + HAL1 LINE L1 1444 1515 -992 541 269 164 61 chr3 161271669 161272338 -66252240 + HAL1 LINE L1 1580 2317 -190 999 98 0 8 chr3 161273843 161273976 -66250602 + AluY SINE Alu 1 132 -179 2307 104 0 10 chr3 161274070 161274378 -66250200 + AluSq SINE Alu 1 305 -8 2492 251 157 29 chr3 161275008 161275989 -66248589 + L2 LINE L2 1745 2851 -463 841 165 38 0 chr3 161276217 161276375 -66248203 - Charlie1a DNA MER1_type -444 1011 848 1636 167 150 36 chr3 161276381 161276795 -66247783 - Charlie1a DNA MER1_type -979 476 16 383 161 0 0 chr3 161277087 161277149 -66247429 - MLT1A1 LTR MaLR 0 365 304 821 176 0 0 chr3 161277155 161277286 -66247292 + FLAM_C SINE Alu 1 131 -12 1680 176 33 10 chr3 161277292 161277598 -66246980 - MLT1A1 LTR MaLR -52 313 1 180 311 0 0 chr3 161277645 161277690 -66246888 + MIR SINE MIR 218 262 0 318 172 195 0 chr3 161277775 161277862 -66246716 - MER5A DNA MER1_type -77 112 9 3317 187 54 11 chr3 161278222 161278922 -66245656 - L1MB8 LINE L1 -4 6174 5445 1502 191 7 104 chr3 161278933 161279337 -66245241 + MLT1A1 LTR MaLR 1 365 0 290 127 73 36 chr3 161279337 161279392 -66245186 - MLT1A1 LTR MaLR -283 82 26 500 309 63 26 chr3 161279776 161279967 -66244611 + MIR SINE MIR 7 204 -58 2512 115 6 8 chr3 161280389 161280754 -66243824 - THE1B LTR MaLR 0 364 1 2783 194 22 73 chr3 161281175 161281903 -66242675 + LTR8 LTR ERV1 1 691 0 270 0 0 0 chr3 161282708 161282738 -66241840 + (CA)n Simple_repeat Simple_repeat 2 31 0 418 296 59 6 chr3 161282849 161283049 -66241529 - L1MEd LINE L1 -902 1588 1262 1355 272 66 76 chr3 161283084 161283559 -66241019 - L1MEd LINE L1 -4879 1240 762 361 169 60 0 chr3 161283559 161283642 -66240936 - L1MB7 LINE L1 0 6184 6097 1355 272 66 76 chr3 161283642 161284314 -66240264 - L1MEd LINE L1 -5357 762 245 2002 220 60 2 chr3 161284317 161284786 -66239792 + L1ME3 LINE L1 5666 6161 -1 467 254 25 0 chr3 161284810 161284932 -66239646 - L1MEd LINE L1 -5905 214 90 338 188 50 12 chr3 161285974 161286054 -66238524 + MLT1J LTR MaLR 71 178 -297 486 269 88 28 chr3 161286101 161286317 -66238261 + MLT1J LTR MaLR 274 502 -9 279 260 168 10 chr3 161286566 161286774 -66237804 - L1ME4a LINE L1 -4 6117 5877 36690 65 11 1 chr3 161287657 161292420 -66232158 - L1P LINE L1 -1336 4810 4 279 155 0 17 chr3 161292421 161292462 -66232116 - Tigger2 DNA MER2_type -469 2249 2210 1949 193 56 7 chr3 161292462 161292871 -66231707 - MSTB1 LTR MaLR -3 429 1 * 5743 122 9 107 chr3 161292871 161293687 -66230891 - Tigger2 DNA MER2_type -508 2210 1541 1397 65 0 11 chr3 161293687 161293872 -66230706 + L1PA8 LINE L1 5990 6172 0 5743 122 9 107 chr3 161293872 161294215 -66230363 - Tigger2 DNA MER2_type -1177 1541 1166 939 212 0 75 chr3 161294216 161294442 -66230136 + AluJo SINE Alu 87 295 -17 6725 141 28 17 chr3 161294459 161295451 -66229127 - Tigger2 DNA MER2_type -1540 1178 171 1485 204 49 64 chr3 161295451 161295901 -66228677 + LTR47B LTR ERVL 1 443 0 6725 141 28 17 chr3 161295901 161296071 -66228507 - Tigger2 DNA MER2_type -2547 171 4 594 103 0 0 chr3 161296367 161296454 -66228124 + (TA)n Simple_repeat Simple_repeat 2 88 0 2245 107 0 0 chr3 161296454 161296752 -66227826 - AluSx SINE Alu -14 298 1 22 0 0 0 chr3 161296901 161296923 -66227655 + AT_rich Low_complexity Low_complexity 1 22 0 1204 76 49 5 chr3 161296923 161297108 -66227470 - L1MA5A LINE L1 -32 6265 6073 554 279 36 47 chr3 161297212 161297351 -66227227 - L1MEd LINE L1 -4863 1509 1422 2358 81 0 0 chr3 161297351 161297649 -66226929 - AluSx SINE Alu -14 298 1 554 279 36 47 chr3 161297649 161297806 -66226772 - L1MEd LINE L1 -4950 1422 1265 588 162 0 20 chr3 161297899 161297998 -66226580 + MSTA LTR MaLR 8 104 -324 226 159 0 0 chr3 161298005 161298049 -66226529 - L1M4 LINE L1 -1194 4952 4909 661 121 30 0 chr3 161299176 161299275 -66225303 + AluSp/q SINE Alu 179 280 -33 621 311 77 26 chr3 161301778 161302245 -66222333 - HAL1b LINE L1 -503 845 355 593 37 0 25 chr3 161302248 161302329 -66222249 + (TTCC)n Simple_repeat Simple_repeat 1 79 0 537 135 0 0 chr3 161302329 161302418 -66222160 + (TC)n Simple_repeat Simple_repeat 1 89 0 880 175 7 7 chr3 161302418 161302572 -66222006 - FRAM SINE Alu -15 161 8 214 225 25 25 chr3 161302600 161302680 -66221898 + CT-rich Low_complexity Low_complexity 1 80 0 257 221 52 13 chr3 161302681 161302758 -66221820 - HAL1b LINE L1 -1020 328 249 1840 153 20 3 chr3 161302766 161303067 -66221511 + AluJb SINE Alu 6 311 -1 321 266 46 55 chr3 161303087 161303196 -66221382 - HAL1b LINE L1 -1194 154 47 2316 80 0 19 chr3 161303663 161303975 -66220603 - AluY SINE Alu -5 306 1 439 256 35 17 chr3 161304611 161304783 -66219795 - L1MC5 LINE L1 -121 7840 7666 314 264 75 69 chr3 161304866 161305025 -66219553 - L1MC5 LINE L1 -492 7469 7310 653 198 0 24 chr3 161305035 161305161 -66219417 - FLAM_A SINE Alu -10 123 1 421 329 0 13 chr3 161305176 161305334 -66219244 - L1MC4a LINE L1 -408 7400 7245 929 197 51 47 chr3 161305334 161305657 -66218921 - L1MC4 LINE L1 -733 7228 6920 807 283 28 14 chr3 161305671 161305954 -66218624 - L1MC4 LINE L1 -1003 7039 6753 449 265 100 48 chr3 161306009 161306318 -66218260 - L1MC4a LINE L1 -1435 6373 6049 1329 253 36 114 chr3 161306371 161307031 -66217547 - MER21B LTR ERV1 -157 706 98 1954 144 3 0 chr3 161307168 161307452 -66217126 - AluJb SINE Alu -13 299 15 2394 90 73 14 chr3 161307453 161307797 -66216781 - THE1B LTR MaLR 0 364 1 10775 88 83 0 chr3 161307798 161309256 -66215322 - THE1B-int LTR MaLR -1 1579 1 2089 113 73 48 chr3 161309256 161309462 -66215116 - THE1B LTR MaLR 0 364 143 2003 142 0 0 chr3 161309462 161309781 -66214797 + AluSx SINE Alu 1 319 0 2089 113 73 48 chr3 161309781 161309928 -66214650 - THE1B LTR MaLR -221 143 1 528 291 84 24 chr3 161310004 161310426 -66214152 - L1M4 LINE L1 -2255 3891 3422 1092 210 133 115 chr3 161310426 161311140 -66213438 + LTR8A LTR ERV1 1 727 0 528 291 84 24 chr3 161311140 161311237 -66213341 - L1M4 LINE L1 -2724 3422 3332 1043 131 0 6 chr3 161311256 161311431 -66213147 + (TTTC)n Simple_repeat Simple_repeat 2 175 0 1001 152 0 0 chr3 161311433 161311584 -66212994 - AluSg/x SINE Alu -32 277 127 6951 57 2 0 chr3 161311616 161312840 -66211738 - L1PA7 LINE L1 -4 6150 4920 22 0 0 0 chr3 161314308 161314330 -66210248 + AT_rich Low_complexity Low_complexity 1 22 0 302 250 160 49 chr3 161315539 161315683 -66208895 - MIR3 SINE MIR -7 201 42 1552 184 7 11 chr3 161315853 161316131 -66208447 + AluJo SINE Alu 4 280 -32 999 233 10 42 chr3 161316329 161316638 -66207940 + AluJo SINE Alu 4 302 0 316 336 34 34 chr3 161317200 161317349 -66207229 + MIR SINE MIR 2 150 -112 284 214 146 34 chr3 161317466 161317555 -66207023 - MIR SINE MIR -158 104 6 228 149 0 0 chr3 161319083 161319130 -66205448 + (T)n Simple_repeat Simple_repeat 1 47 0 1277 170 115 0 chr3 161319147 161319365 -66205213 - AluJo SINE Alu -69 243 1 188 236 28 83 chr3 161320569 161320641 -66203937 + L2 LINE L2 3205 3272 0 201 39 0 0 chr3 161320904 161320930 -66203648 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr3 161323334 161323355 -66201223 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 161323525 161323548 -66201030 + AT_rich Low_complexity Low_complexity 1 23 0 28 0 0 0 chr3 161325550 161325578 -66199000 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr3 161325777 161325803 -66198775 + AT_rich Low_complexity Low_complexity 1 26 0 28 29 0 0 chr3 161326427 161326462 -66198116 + AT_rich Low_complexity Low_complexity 1 35 0 203 327 73 18 chr3 161327562 161327672 -66196906 - MIR SINE MIR -76 186 71 23 0 0 0 chr3 161328775 161328798 -66195780 + AT_rich Low_complexity Low_complexity 1 23 0 213 159 23 0 chr3 161329196 161329240 -66195338 + A-rich Low_complexity Low_complexity 3 47 0 362 308 107 19 chr3 161329891 161330149 -66194429 + L1ME LINE L1 5265 5499 -622 2468 71 0 3 chr3 161330149 161330459 -66194119 - AluY SINE Alu 0 311 3 362 308 107 19 chr3 161330459 161330644 -66193934 + L1ME LINE L1 5499 5769 -352 1593 193 37 44 chr3 161331674 161332083 -66192495 - L1MCa LINE L1 -1198 5228 4823 1736 182 23 26 chr3 161332093 161332445 -66192133 + MLT1A1 LTR MaLR 15 365 0 6645 223 18 18 chr3 161332445 161334262 -66190316 - L1MCa LINE L1 -1599 4827 3012 1342 131 0 0 chr3 161334362 161334538 -66190040 - AluSg SINE Alu -134 176 1 467 138 0 0 chr3 161334549 161334614 -66189964 - AluJo SINE Alu -23 289 225 1139 196 0 0 chr3 161334616 161334800 -66189778 - AluJo SINE Alu -125 187 4 1661 181 40 23 chr3 161334809 161335085 -66189493 - L1MCa LINE L1 -3579 2847 2577 1544 204 52 0 chr3 161335085 161335374 -66189204 - AluJo SINE Alu -8 304 1 1661 181 40 23 chr3 161335374 161335630 -66188948 - L1MCa LINE L1 -3849 2577 2297 3234 139 8 0 chr3 161335630 161336140 -66188438 + MER75 DNA T2_type 1 514 0 1661 181 40 23 chr3 161336140 161336286 -66188292 - L1MCa LINE L1 -4129 2297 2155 8956 94 27 34 chr3 161336293 161338775 -66185803 + L1PBa LINE L1 1 2725 -4138 369 0 0 0 chr3 161338775 161338816 -66185762 + (CA)n Simple_repeat Simple_repeat 2 42 0 4987 208 28 37 chr3 161338818 161340209 -66184369 + L1PBa LINE L1 2799 4176 -2686 1607 157 50 17 chr3 161340209 161340509 -66184069 - MER51B LTR ERV1 0 377 68 262 140 0 53 chr3 161340506 161340563 -66184015 - MER51B LTR ERV1 -215 162 109 * 444 186 71 71 chr3 161340573 161340713 -66183865 - MER51B LTR ERV1 -237 140 1 4249 206 6 42 chr3 161340714 161341780 -66182798 + L1 LINE L1 4174 5200 -1662 2046 148 7 0 chr3 161342980 161343285 -66181293 + AluSx SINE Alu 1 307 -5 441 0 0 0 chr3 161343285 161343334 -66181244 + (CA)n Simple_repeat Simple_repeat 2 50 0 452 298 68 24 chr3 161344122 161344327 -66180251 + MIR SINE MIR 12 225 -37 2264 92 3 0 chr3 161344544 161344827 -66179751 - AluSx SINE Alu -20 292 9 1562 167 31 17 chr3 161346306 161346599 -66177979 + AluJo SINE Alu 1 297 -15 2402 206 78 55 chr3 161347236 161348306 -66176272 + L1ME1 LINE L1 4936 6056 -110 606 116 0 0 chr3 161348308 161348394 -66176184 - AluJ/FRAM SINE Alu -13 299 214 1229 241 62 3 chr3 161348494 161348785 -66175793 + MLT1A1 LTR MaLR 58 365 0 383 179 0 36 chr3 161350040 161350124 -66174454 - MIR3 SINE MIR -7 201 121 249 211 19 0 chr3 161350384 161350436 -66174142 + L2 LINE L2 3256 3308 -5 3299 176 8 23 chr3 161351683 161352591 -66171987 + L1P5 LINE L1 4592 5482 -669 932 140 7 0 chr3 161352592 161352728 -66171850 + AluSq/x SINE Alu 1 137 -176 17487 131 12 103 chr3 161352736 161356469 -66168109 + L1P LINE L1 13 3405 -2741 739 277 31 50 chr3 161356569 161356890 -66167688 - L1ME LINE L1 -5709 361 47 425 333 77 50 chr3 161357307 161357797 -66166781 - L2 LINE L2 0 3272 2766 632 299 9 9 chr3 161358024 161358245 -66166333 - L1MC4a LINE L1 -1901 5907 5687 1683 43 0 5 chr3 161358256 161358464 -66166114 + L1PA8 LINE L1 5952 6158 -14 198 154 39 0 chr3 161358466 161358544 -66166034 + (TA)n Simple_repeat Simple_repeat 1 81 0 25 0 0 0 chr3 161358544 161358569 -66166009 + AT_rich Low_complexity Low_complexity 1 25 0 272 285 24 8 chr3 161358572 161358695 -66165883 - L1MC4a LINE L1 -439 5682 5558 5712 65 8 8 chr3 161359231 161359968 -66164610 - SVA Other Other 0 1386 650 300 354 55 6 chr3 161360007 161360188 -66164390 - L1MC4a LINE L1 -2271 5537 5348 186 43 0 0 chr3 161360211 161360234 -66164344 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 4279 221 115 28 chr3 161360598 161360677 -66163901 - L1MC4 LINE L1 0 8042 7971 1865 268 40 22 chr3 161360677 161361131 -66163447 - MLT1H1 LTR MaLR -1 554 87 2270 98 0 0 chr3 161361131 161361428 -66163150 + AluSx SINE Alu 1 297 -15 1865 268 40 22 chr3 161361428 161361517 -66163061 - MLT1H1 LTR MaLR -468 87 1 4279 221 115 28 chr3 161361517 161361660 -66162918 - L1MC4 LINE L1 -71 7971 7842 731 141 0 8 chr3 161361660 161361788 -66162790 - L1MA5A LINE L1 -5 6292 6166 4279 221 115 28 chr3 161361788 161363507 -66161071 - L1MC4 LINE L1 -200 7842 5828 1272 183 0 21 chr3 161363507 161363748 -66160830 - AluJo SINE Alu -9 303 68 7173 54 0 4 chr3 161363852 161365157 -66159421 + L1PA5 LINE L1 4856 6154 0 2326 162 74 2 chr3 161365168 161365600 -66158978 + Tigger2 DNA MER2_type 2253 2715 -3 495 288 75 20 chr3 161365603 161365898 -66158680 + L1M4 LINE L1 2137 2447 -3699 589 198 48 93 chr3 161366009 161366257 -66158321 + L1M4 LINE L1 2746 2982 -3164 1244 198 208 42 chr3 161366257 161366593 -66157985 - MLT2B1 LTR ERVL 0 520 96 2112 128 3 7 chr3 161366593 161366889 -66157689 + AluSx SINE Alu 1 295 -17 1244 198 208 42 chr3 161366889 161366981 -66157597 - MLT2B1 LTR ERVL -424 96 21 513 259 78 10 chr3 161367076 161367269 -66157309 - MLT1J1 LTR MaLR -4 442 237 887 207 17 6 chr3 161367272 161367446 -66157132 - MER5A DNA MER1_type -2 187 12 561 200 17 17 chr3 161367485 161367605 -66156973 - MLT1J2 LTR MaLR -295 155 36 2923 199 63 68 chr3 161367605 161367738 -66156840 - L1MC4a LINE L1 -692 7116 6984 655 194 0 23 chr3 161367738 161367867 -66156711 - FLAM_C SINE Alu -7 126 1 2923 199 63 68 chr3 161367867 161368605 -66155973 - L1MC4a LINE L1 -824 6984 6249 2302 67 0 3 chr3 161368615 161368955 -66155623 - AluY SINE Alu 0 339 1 1855 63 31 31 chr3 161368956 161369211 -66155367 - L1PA11 LINE L1 -13 6161 5907 482 180 16 33 chr3 161369215 161369337 -66155241 + L1ME3A LINE L1 2239 2358 -3788 3082 204 50 18 chr3 161369344 161370091 -66154487 + L1ME3A LINE L1 2485 3267 -2879 1868 130 31 10 chr3 161370091 161370383 -66154195 + AluJo SINE Alu 1 298 -14 3082 204 50 18 chr3 161370383 161370534 -66154044 + L1ME3A LINE L1 3267 3412 -2734 1133 324 66 30 chr3 161370671 161371801 -66152777 - HERVL-B1 LTR ERVL -328 5326 3930 1087 252 45 19 chr3 161371818 161372127 -66152451 - HERV16 LTR ERVL -4391 605 289 266 275 107 39 chr3 161372263 161372441 -66152137 + MLT1J LTR MaLR 228 417 -94 902 296 75 35 chr3 161372626 161374218 -66150360 + L1ME3A LINE L1 3477 5177 -969 693 274 73 47 chr3 161374356 161374739 -66149839 + L1ME3A LINE L1 5374 5765 -405 257 314 58 0 chr3 161374755 161374876 -66149702 + L1ME3A LINE L1 5821 5948 -222 1385 246 99 35 chr3 161374993 161375514 -66149064 - MLT1F1 LTR MaLR -12 555 1 441 0 0 0 chr3 161375522 161375571 -66149007 + (TG)n Simple_repeat Simple_repeat 2 50 0 660 225 89 0 chr3 161376048 161376217 -66148361 - MER46C DNA MER2_type -149 189 6 8543 150 15 12 chr3 161376353 161377488 -66147090 - L1MA5 LINE L1 -1 6299 5169 1768 130 38 41 chr3 161377488 161377780 -66146798 - AluSx SINE Alu -21 291 1 8543 150 15 12 chr3 161377780 161379133 -66145445 - L1MA5 LINE L1 -1131 5169 3796 396 0 0 0 chr3 161379207 161379251 -66145327 + (TG)n Simple_repeat Simple_repeat 2 45 0 2159 195 32 53 chr3 161379255 161379762 -66144816 + MLT1D LTR MaLR 10 505 0 1055 248 102 9 chr3 161379852 161380175 -66144403 - L1MC4a LINE L1 -95 7713 7361 1980 158 0 3 chr3 161381524 161381821 -66142757 + AluJo SINE Alu 1 296 -16 281 293 192 6 chr3 161381933 161382100 -66142478 + MIR SINE MIR 40 237 -25 231 232 58 14 chr3 161382909 161382978 -66141600 + MIR SINE MIR 105 176 -86 2220 271 87 6 chr3 161383088 161383809 -66140769 + MER20B DNA MER1_type 1 780 -4 1116 225 78 92 chr3 161383874 161384385 -66140193 - MLT1J LTR MaLR 0 511 8 582 244 25 55 chr3 161384459 161384660 -66139918 + MIR SINE MIR 20 214 -48 2606 34 0 3 chr3 161384661 161384958 -66139620 + AluY SINE Alu 1 296 -15 1347 203 28 125 chr3 161385383 161385695 -66138883 + L1MC5 LINE L1 6709 7050 -911 492 117 11 21 chr3 161385695 161385789 -66138789 - L1MA5A LINE L1 0 6297 6205 1347 203 28 125 chr3 161385789 161385807 -66138771 + L1MC5 LINE L1 7050 7068 -893 207 0 0 0 chr3 161385807 161385830 -66138748 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 1347 203 28 125 chr3 161385830 161385953 -66138625 + L1MC5 LINE L1 7068 7096 -865 2153 119 0 10 chr3 161385953 161386255 -66138323 - AluSx SINE Alu -13 299 1 1347 203 28 125 chr3 161386255 161386381 -66138197 + L1MC5 LINE L1 7096 7233 -728 1081 230 117 64 chr3 161386509 161387040 -66137538 + L1MC5 LINE L1 7260 7818 -143 325 326 83 21 chr3 161387302 161387544 -66137034 - MLT1K LTR MaLR -152 436 180 1600 171 51 14 chr3 161388015 161388307 -66136271 + AluJo SINE Alu 1 303 -9 1802 166 3 20 chr3 161388572 161388739 -66135839 + AluSx SINE Alu 1 162 -150 5477 84 97 1 chr3 161388739 161389493 -66135085 + LTR12 LTR ERV1 1 826 0 1802 166 3 20 chr3 161389493 161389627 -66134951 + AluSx SINE Alu 162 297 -15 381 73 73 0 chr3 161389627 161389682 -66134896 + L1PA14 LINE L1 5359 5417 -746 5348 117 5 3 chr3 161389782 161390559 -66134019 + L1PA14 LINE L1 5383 6161 0 188 234 425 0 chr3 161390625 161390719 -66133859 + MIR SINE MIR 20 153 -109 379 285 40 20 chr3 161391695 161391846 -66132732 - MIR SINE MIR -87 175 22 5308 217 73 21 chr3 161392637 161392655 -66131923 - L1M LINE L1 -820 5326 5310 1642 138 0 115 chr3 161392655 161393002 -66131576 - AluSq SINE Alu -2 311 5 5308 217 73 21 chr3 161393002 161393837 -66130741 - L1M LINE L1 -836 5310 4378 1873 171 0 0 chr3 161393837 161394135 -66130443 - AluJb SINE Alu -9 303 6 5308 217 73 21 chr3 161394135 161394786 -66129792 - L1M LINE L1 -1768 4378 3763 1742 157 25 21 chr3 161394787 161395068 -66129510 + AluJb SINE Alu 1 282 -30 434 109 73 6 chr3 161395082 161395247 -66129331 + (TA)n Simple_repeat Simple_repeat 1 176 0 3587 243 55 95 chr3 161395256 161398299 -66126279 - L1MEc LINE L1 -2373 3842 987 309 89 0 0 chr3 161398299 161398344 -66126234 + (TG)n Simple_repeat Simple_repeat 1 45 0 3587 243 55 95 chr3 161398344 161398543 -66126035 - L1MEc LINE L1 -5228 987 782 445 276 12 52 chr3 161398528 161398747 -66125831 + L1MEc LINE L1 1863 2029 -4511 * 692 60 0 0 chr3 161398912 161398995 -66125583 - AluY SINE Alu -211 100 18 834 198 47 35 chr3 161399032 161399242 -66125336 - L1MC/D LINE L1 -470 5714 5510 2221 111 0 7 chr3 161399269 161399576 -66125002 + AluSq SINE Alu 1 305 -8 1009 179 6 6 chr3 161399589 161399762 -66124816 - FRAM SINE Alu -3 173 1 1074 181 17 71 chr3 161399769 161400007 -66124571 - AluJb SINE Alu 0 312 88 367 236 122 0 chr3 161400178 161400301 -66124277 - L1MC4a LINE L1 -1486 6322 6185 704 281 132 42 chr3 161400529 161400931 -66123647 + L2 LINE L2 2876 3313 0 830 272 21 64 chr3 161401021 161401304 -66123274 - MLT1L LTR MaLR -224 391 121 258 275 14 14 chr3 161402033 161402102 -66122476 + MIR SINE MIR 28 96 -166 249 159 0 0 chr3 161402599 161402643 -66121935 + MIR SINE MIR 48 91 -171 2208 130 0 0 chr3 161403343 161403642 -66120936 + AluSx SINE Alu 1 299 -13 348 230 86 137 chr3 161403681 161403959 -66120619 + MLT1I LTR MaLR 146 409 0 338 258 21 0 chr3 161403960 161404053 -66120525 - MIR SINE MIR -9 253 159 2082 249 57 7 chr3 161404111 161404653 -66119925 + L1MEc LINE L1 34 602 -5794 1706 168 17 17 chr3 161404655 161404947 -66119631 - AluJb SINE Alu -11 301 10 4879 249 54 27 chr3 161404985 161408074 -66116504 + L1MEc LINE L1 810 3942 -2273 180 0 0 0 chr3 161408139 161408159 -66116419 + (A)n Simple_repeat Simple_repeat 1 20 0 192 40 0 0 chr3 161408162 161408187 -66116391 + (CAA)n Simple_repeat Simple_repeat 3 27 0 232 339 41 18 chr3 161408453 161408624 -66115954 - LTR67 LTR ERVL -10 547 373 4294 142 2 0 chr3 161408804 161409437 -66115141 - MER41B LTR ERV1 -1 634 1 239 229 167 10 chr3 161409576 161409672 -66114906 - LTR67 LTR ERVL -442 115 5 258 268 12 12 chr3 161409676 161409758 -66114820 - MIR SINE MIR -97 165 84 221 330 68 0 chr3 161409768 161409886 -66114692 - MIR SINE MIR -37 225 100 914 268 57 9 chr3 161410435 161410752 -66113826 + L1ME3A LINE L1 5620 5951 -219 2290 97 0 3 chr3 161410816 161411105 -66113473 + AluSg1 SINE Alu 1 288 -21 209 193 0 18 chr3 161411386 161411443 -66113135 + CT-rich Low_complexity Low_complexity 3 58 0 339 342 47 64 chr3 161411453 161411687 -66112891 - L2 LINE L2 -1 3271 3042 244 296 96 71 chr3 161411729 161412125 -66112453 - L2 LINE L2 -60 3212 2807 1680 201 91 80 chr3 161412973 161413500 -66111078 - MLT1F LTR MaLR 0 542 10 248 305 57 29 chr3 161414081 161414186 -66110392 - L2 LINE L2 -49 3223 3116 228 353 153 6 chr3 161414223 161414393 -66110185 + L2 LINE L2 2551 2745 -569 223 264 0 0 chr3 161415275 161415328 -66109250 + (TGAG)n Simple_repeat Simple_repeat 2 54 0 192 111 0 0 chr3 161415583 161415619 -66108959 + (CGG)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr3 161415641 161415662 -66108916 + GC_rich Low_complexity Low_complexity 1 21 0 26 50 0 0 chr3 161415764 161415804 -66108774 + GC_rich Low_complexity Low_complexity 1 40 0 528 287 94 10 chr3 161416451 161416653 -66107925 + MIR SINE MIR 44 262 0 198 289 12 48 chr3 161416654 161416737 -66107841 + MIR SINE MIR 74 153 -109 356 212 50 0 chr3 161417208 161417307 -66107271 + MIR SINE MIR 32 135 -127 25 51 0 0 chr3 161417638 161417677 -66106901 + AT_rich Low_complexity Low_complexity 1 39 0 297 243 103 7 chr3 161417814 161417950 -66106628 + L1ME4a LINE L1 5319 5467 -2341 245 264 230 13 chr3 161417968 161418207 -66106371 + L2 LINE L2 2687 2977 -337 2351 79 0 0 chr3 161418877 161419168 -66105410 + AluY SINE Alu 7 297 -14 193 264 42 14 chr3 161419742 161419814 -66104764 - L2 LINE L2 -639 2675 2602 213 177 16 81 chr3 161420568 161420630 -66103948 + CT-rich Low_complexity Low_complexity 4 61 0 315 248 69 30 chr3 161422828 161422929 -66101649 + L2 LINE L2 3168 3272 0 623 170 45 0 chr3 161423402 161423469 -66101109 - MLT1A1 LTR MaLR -247 118 43 2504 144 51 10 chr3 161423469 161423880 -66100698 - MSTA LTR MaLR 0 428 1 623 170 45 0 chr3 161423880 161423924 -66100654 - MLT1A1 LTR MaLR -322 43 2 320 200 48 86 chr3 161424618 161424723 -66099855 + MIR SINE MIR 19 119 -143 882 291 63 61 chr3 161424728 161425204 -66099374 - L1P4 LINE L1 -441 5724 5254 487 332 55 35 chr3 161425510 161425766 -66098812 + L1ME4a LINE L1 5820 6080 -41 847 192 20 15 chr3 161425780 161425983 -66098595 - L1MC2 LINE L1 -9 6335 6132 2187 142 3 0 chr3 161426081 161426390 -66098188 - AluSx SINE Alu -2 310 1 1348 156 93 0 chr3 161426390 161426659 -66097919 - L1MC3 LINE L1 -212 7573 7280 250 45 45 23 chr3 161426664 161426708 -66097870 + (TATAA)n Simple_repeat Simple_repeat 3 47 0 316 320 87 43 chr3 161426730 161427722 -66096856 - L1M4 LINE L1 -2981 3165 2131 330 283 68 37 chr3 161429370 161429561 -66095017 - MIR SINE MIR -39 223 27 250 178 267 11 chr3 161429834 161429924 -66094654 + MIR SINE MIR 33 145 -63 840 286 25 4 chr3 161429943 161430181 -66094397 + MIR SINE MIR 16 258 -4 282 277 227 8 chr3 161431274 161431393 -66093185 + MIR SINE MIR 47 191 -71 309 235 122 20 chr3 161431393 161431491 -66093087 + MIR SINE MIR 148 255 -7 638 293 81 14 chr3 161431705 161431927 -66092651 - Charlie8 DNA MER1_type -2180 237 1 200 312 26 0 chr3 161432912 161432989 -66091589 + MIR SINE MIR 73 151 -111 203 350 50 30 chr3 161433985 161434085 -66090493 + MIR SINE MIR 51 152 -110 194 146 0 24 chr3 161434560 161434601 -66089977 + (TAA)n Simple_repeat Simple_repeat 2 41 0 958 196 12 0 chr3 161434677 161434850 -66089728 - FRAM SINE Alu -1 175 1 23 0 0 0 chr3 161434892 161434915 -66089663 + AT_rich Low_complexity Low_complexity 1 23 0 525 258 65 23 chr3 161435645 161435862 -66088716 - MIR SINE MIR -2 260 35 2081 165 81 2 chr3 161436550 161436945 -66087633 + MSTB LTR MaLR 1 426 0 461 265 43 22 chr3 161437116 161437301 -66087277 - L1MC2 LINE L1 -1897 5911 5723 374 264 86 21 chr3 161437347 161437487 -66087091 + MIR SINE MIR 98 246 -16 21 36 0 0 chr3 161437608 161437636 -66086942 + AT_rich Low_complexity Low_complexity 1 28 0 187 229 96 36 chr3 161437826 161437909 -66086669 + L2 LINE L2 3178 3265 -7 396 319 107 28 chr3 161438339 161438555 -66086023 + MIR SINE MIR 1 233 -29 417 280 21 14 chr3 161439152 161439295 -66085283 - MIR3 SINE MIR -22 186 43 461 291 22 8 chr3 161439609 161439743 -66084835 + MIR SINE MIR 40 175 -87 532 201 191 7 chr3 161439752 161439900 -66084678 - MER5A DNA MER1_type -6 183 5 1938 137 6 43 chr3 161439989 161440311 -66084267 + AluSx SINE Alu 1 310 -2 184 290 103 41 chr3 161442430 161442575 -66082003 - MER5A DNA MER1_type -10 179 26 2444 79 0 13 chr3 161443204 161443508 -66081070 + AluY SINE Alu 1 300 -11 389 299 172 27 chr3 161443802 161444133 -66080445 - L2 LINE L2 -13 3300 2922 378 273 80 0 chr3 161444371 161444499 -66080079 - MIR SINE MIR -65 143 31 540 208 64 35 chr3 161445123 161445296 -66079282 + MIR3 SINE MIR 20 197 -11 595 232 91 35 chr3 161445369 161445567 -66079011 - MER3 DNA MER1_type 0 209 1 370 277 85 8 chr3 161445918 161446048 -66078530 + MIR SINE MIR 69 208 -54 414 0 0 0 chr3 161446843 161446889 -66077689 + (TCTA)n Simple_repeat Simple_repeat 2 47 0 310 296 178 7 chr3 161446892 161447027 -66077551 - MIR SINE MIR -72 190 33 285 236 187 32 chr3 161448153 161448276 -66076302 + MIR SINE MIR 16 157 -105 383 325 104 56 chr3 161449056 161449469 -66075109 - L2 LINE L2 -1 3271 2839 1196 265 54 37 chr3 161449473 161449880 -66074698 - MLT1J LTR MaLR 0 511 98 400 280 37 0 chr3 161449870 161449977 -66074601 + MER117 DNA MER1_type 33 143 -54 * 761 282 32 18 chr3 161450541 161450761 -66073817 + MIR SINE MIR 12 234 -28 270 263 233 8 chr3 161450829 161450962 -66073616 + MIR SINE MIR 87 249 -13 620 240 111 20 chr3 161450990 161451204 -66073374 - MIR SINE MIR -27 235 5 469 298 58 0 chr3 161451759 161451930 -66072648 - MIR SINE MIR -35 227 47 240 261 51 65 chr3 161452485 161452623 -66071955 + L1ME4a LINE L1 5943 6078 -43 733 299 84 20 chr3 161452759 161453117 -66071461 + LTR16C LTR ERVL 110 490 -1 254 170 0 21 chr3 161454060 161454107 -66070471 + MIR SINE MIR 63 108 -100 2125 238 146 22 chr3 161454432 161455511 -66069067 - L2 LINE L2 0 3313 2103 278 306 27 48 chr3 161455511 161455658 -66068920 + MIR SINE MIR 119 262 0 239 326 40 45 chr3 161455755 161455912 -66068666 - MIR3 SINE MIR -59 149 11 465 286 65 40 chr3 161456342 161456541 -66068037 + MIR SINE MIR 32 235 -27 244 280 117 13 chr3 161457051 161457206 -66067372 - MIR3 SINE MIR -79 183 13 498 297 134 13 chr3 161457501 161457733 -66066845 - MIR SINE MIR -1 261 2 200 386 20 0 chr3 161458134 161458235 -66066343 + MIR SINE MIR 81 183 -79 194 300 67 0 chr3 161458475 161458565 -66066013 + L2 LINE L2 3177 3272 0 216 255 0 0 chr3 161458770 161458817 -66065761 - L2 LINE L2 -259 3054 3008 23 0 0 0 chr3 161458996 161459019 -66065559 + GC_rich Low_complexity Low_complexity 1 23 0 293 224 30 0 chr3 161459024 161459091 -66065487 + LTR16C LTR ERVL 179 247 -244 563 367 69 9 chr3 161460322 161460668 -66063910 - L3 LINE CR1 -526 1051 685 180 97 0 0 chr3 161461422 161461453 -66063125 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 865 129 0 0 chr3 161461454 161461570 -66063008 - AluSq/x SINE Alu -197 116 1 24 32 0 0 chr3 161461808 161461839 -66062739 + AT_rich Low_complexity Low_complexity 1 31 0 200 328 92 34 chr3 161461875 161462082 -66062496 - MIR SINE MIR 0 262 10 497 295 62 47 chr3 161462134 161462758 -66061820 - L1M4 LINE L1 -1336 4810 4177 1460 235 70 0 chr3 161462814 161463184 -66061394 - MSTD LTR MaLR 0 396 1 1490 47 0 0 chr3 161463199 161463370 -66061208 - AluY SINE Alu -13 298 128 381 380 117 9 chr3 161463383 161463596 -66060982 - L1MC/D LINE L1 -1992 5816 5581 2709 140 31 9 chr3 161464207 161464664 -66059914 + MLT1C LTR MaLR 1 467 0 676 311 25 13 chr3 161465456 161465694 -66058884 + MIR SINE MIR 22 262 0 180 135 0 0 chr3 161466065 161466102 -66058476 + (TTCA)n Simple_repeat Simple_repeat 4 40 0 492 294 130 52 chr3 161466244 161466683 -66057895 - L2 LINE L2 -16 3297 2825 203 310 30 10 chr3 161468265 161468365 -66056213 - L2 LINE L2 -338 2976 2875 419 268 22 116 chr3 161469433 161469709 -66054869 - MIR SINE MIR 0 262 13 258 335 47 35 chr3 161470047 161470217 -66054361 + MIR3 SINE MIR 21 192 -16 323 256 78 52 chr3 161470584 161470775 -66053803 - MLT1K LTR MaLR -2 586 391 467 252 14 34 chr3 161471015 161471162 -66053416 - MLT1K LTR MaLR -319 269 126 2209 120 7 0 chr3 161471690 161471989 -66052589 + AluSx SINE Alu 3 303 -9 217 275 108 8 chr3 161472058 161472178 -66052400 - MIR3 SINE MIR -13 195 64 288 301 18 18 chr3 161472796 161472909 -66051669 - L2 LINE L2 -236 3036 2924 264 259 102 19 chr3 161473222 161473330 -66051248 - L1MC4a LINE L1 -1883 5925 5809 276 238 103 16 chr3 161473358 161473484 -66051094 - MIR3 SINE MIR -38 170 34 249 200 20 0 chr3 161473655 161473705 -66050873 + CT-rich Low_complexity Low_complexity 4 54 0 417 217 169 48 chr3 161474423 161474500 -66050078 - MIR SINE MIR -34 228 162 1254 249 75 16 chr3 161474500 161474886 -66049692 - MLT1I LTR MaLR 0 409 1 417 217 169 48 chr3 161474886 161474997 -66049581 - MIR SINE MIR -100 162 17 414 308 48 27 chr3 161474991 161475137 -66049441 + MIR SINE MIR 5 153 -109 * 958 196 88 10 chr3 161475147 161475351 -66049227 + MER46C DNA MER2_type 42 261 -77 420 308 19 10 chr3 161475354 161475368 -66049210 + MIR SINE MIR 88 100 -162 243 0 0 0 chr3 161475368 161475395 -66049183 + (T)n Simple_repeat Simple_repeat 1 27 0 420 308 19 10 chr3 161475395 161475525 -66049053 + MIR SINE MIR 100 262 0 664 228 133 24 chr3 161476102 161476313 -66048265 + MIR SINE MIR 27 260 -2 2789 0 0 0 chr3 161476378 161476684 -66047894 + AluYa5 SINE Alu 1 306 -5 4003 127 35 77 chr3 161477089 161477828 -66046750 + L1MB5 LINE L1 5425 6131 -43 1747 169 28 0 chr3 161477828 161478118 -66046460 + AluJo SINE Alu 1 298 -14 4003 127 35 77 chr3 161478118 161478160 -66046418 + L1MB5 LINE L1 6131 6173 -1 284 232 74 32 chr3 161478946 161479041 -66045537 + MIR SINE MIR 35 133 -75 676 242 56 28 chr3 161480540 161480755 -66043823 + MIR SINE MIR 21 241 -21 262 333 62 8 chr3 161481162 161481291 -66043287 - MIR SINE MIR 0 262 127 10817 63 4 0 chr3 161481521 161483666 -66040912 - L1PA6 LINE L1 -2 6152 3992 22634 112 11 18 chr3 161483667 161487089 -66037489 - L1PA6 LINE L1 -2736 3410 11 491 230 206 0 chr3 161488850 161488976 -66035602 - MER5A DNA MER1_type -21 168 17 340 265 153 29 chr3 161490126 161490296 -66034282 - MIR3 SINE MIR -15 193 3 249 259 9 62 chr3 161490630 161490742 -66033836 - MIR SINE MIR 0 262 157 291 304 145 43 chr3 161492024 161492784 -66031794 - L2 LINE L2 -2287 1027 191 293 305 34 8 chr3 161494247 161494365 -66030213 - L2 LINE L2 -235 3037 2917 233 396 0 0 chr3 161494778 161494874 -66029704 - MIR SINE MIR -101 161 66 278 218 51 13 chr3 161495130 161495208 -66029370 - MIR SINE MIR -64 198 118 1664 236 138 34 chr3 161495367 161496006 -66028572 - L1ME3A LINE L1 -5 6165 5461 7935 157 29 41 chr3 161496007 161496185 -66028393 - L1PB1 LINE L1 0 6867 6688 2189 98 0 0 chr3 161496185 161496480 -66028098 - AluSg SINE Alu -15 295 1 7935 157 29 41 chr3 161496480 161498896 -66025682 - L1PB1 LINE L1 -179 6688 4305 946 252 93 52 chr3 161498930 161499350 -66025228 - L1ME3 LINE L1 -1 6161 5725 225 0 0 0 chr3 161499353 161499378 -66025200 + (TTA)n Simple_repeat Simple_repeat 3 27 0 44480 41 4 0 chr3 161499378 161505494 -66019084 - L1PA4 LINE L1 -18 6137 1 6282 198 13 14 chr3 161505612 161506819 -66017759 - L1PB1 LINE L1 -2547 4315 3108 2373 90 0 0 chr3 161506819 161507130 -66017448 - AluY SINE Alu 0 311 1 6282 198 13 14 chr3 161507130 161507326 -66017252 - L1PB1 LINE L1 -3754 3108 2913 3163 128 6 2 chr3 161507326 161507795 -66016783 - L1PB1 LINE L1 -5280 1583 1113 463 275 0 4 chr3 161508220 161508369 -66016209 - L1ME3 LINE L1 -690 5474 5330 285 167 37 0 chr3 161509148 161509202 -66015376 - L1MB5 LINE L1 -214 5960 5905 216 200 0 0 chr3 161509219 161509264 -66015314 + A-rich Low_complexity Low_complexity 1 45 0 230 328 0 0 chr3 161510136 161510203 -66014375 + L2 LINE L2 3185 3251 -21 520 256 75 71 chr3 161510447 161510509 -66014069 + MER112 DNA MER1_type 6 66 -194 2369 44 7 0 chr3 161510509 161510803 -66013775 + AluY SINE Alu 1 296 -15 520 256 75 71 chr3 161510803 161510994 -66013584 + MER112 DNA MER1_type 66 260 0 297 250 42 0 chr3 161513495 161513567 -66011011 + MIR SINE MIR 42 116 -92 477 260 98 12 chr3 161515309 161515341 -66009237 + Charlie8 DNA MER1_type 34 62 -279 483 63 0 0 chr3 161515341 161515404 -66009174 + (TG)n Simple_repeat Simple_repeat 2 64 0 477 260 98 12 chr3 161515404 161515544 -66009034 + Charlie8 DNA MER1_type 62 221 -120 231 146 0 0 chr3 161515734 161515775 -66008803 + (CA)n Simple_repeat Simple_repeat 1 41 0 817 224 6 12 chr3 161515999 161516164 -66008414 + MER5B DNA MER1_type 15 178 0 72 47 0 0 chr3 161516688 161516795 -66007783 + AT_rich Low_complexity Low_complexity 1 107 0 1823 182 39 17 chr3 161517440 161517797 -66006781 - MLT1A1 LTR MaLR 0 365 1 1456 251 52 45 chr3 161517797 161518282 -66006296 - LTR33 LTR ERVL -1 520 33 2045 132 0 0 chr3 161518702 161518998 -66005580 + AluSx SINE Alu 4 299 -13 531 327 14 29 chr3 161519190 161519398 -66005180 - L2 LINE L2 0 3313 3109 2187 187 31 2 chr3 161519413 161519836 -66004742 + MER63B DNA MER1_type 1 435 -1 317 202 71 48 chr3 161520152 161520236 -66004342 + L1MC4 LINE L1 1982 6982 -1340 2322 241 72 18 chr3 161520237 161521113 -66003465 + L1ME3 LINE L1 3787 4709 -1437 13014 172 39 16 chr3 161521116 161524549 -66000029 + L1PA14 LINE L1 8 3786 -3798 5959 172 14 2 chr3 161524549 161525628 -65998950 + L1PA14 LINE L1 5546 6637 -947 790 84 37 0 chr3 161525632 161525739 -65998839 + L1PA14 LINE L1 7474 7584 -15 2368 65 0 29 chr3 161525741 161526048 -65998530 - AluY SINE Alu -13 298 1 469 80 53 13 chr3 161526097 161526172 -65998406 + L1PA14 LINE L1 6082 6159 -2 6809 79 6 1 chr3 161526186 161527134 -65997444 + L1PA14 LINE L1 6644 7596 -3 1569 236 45 46 chr3 161527146 161527210 -65997368 + L1ME3 LINE L1 4695 4758 -1388 2213 176 18 23 chr3 161527210 161527608 -65996970 + MSTD LTR MaLR 1 396 0 1569 236 45 46 chr3 161527608 161528103 -65996475 + L1ME3 LINE L1 4758 5253 -893 1566 221 40 38 chr3 161528106 161528526 -65996052 + L1ME3 LINE L1 5711 6131 -31 2495 71 0 0 chr3 161528545 161528856 -65995722 - AluY SINE Alu 0 311 1 21 0 0 0 chr3 161529400 161529421 -65995157 + AT_rich Low_complexity Low_complexity 1 21 0 492 192 101 123 chr3 161529554 161529671 -65994907 + L1MC5 LINE L1 7696 7814 -147 2062 82 11 19 chr3 161529671 161529941 -65994637 + AluSx SINE Alu 1 268 -44 492 192 101 123 chr3 161529941 161529953 -65994625 + L1MC5 LINE L1 7814 7825 -136 248 0 31 0 chr3 161529953 161529985 -65994593 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 492 192 101 123 chr3 161529985 161530073 -65994505 + L1MC5 LINE L1 7825 7909 -52 6953 212 37 30 chr3 161530290 161531823 -65992755 - L1ME1 LINE L1 -265 5970 4449 457 133 67 0 chr3 161531823 161531898 -65992680 + MADE1 DNA Mariner 1 80 0 6953 212 37 30 chr3 161531898 161532441 -65992137 - L1ME1 LINE L1 -1786 4449 3911 191 88 29 0 chr3 161532441 161532475 -65992103 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1443 198 22 7 chr3 161532478 161532756 -65991822 - AluJo SINE Alu -30 282 1 6953 212 37 30 chr3 161532756 161533120 -65991458 - L1ME1 LINE L1 -2325 3910 3585 10028 106 55 6 chr3 161533121 161534622 -65989956 + Tigger1 DNA MER2_type 197 1770 -648 38 39 0 0 chr3 161534633 161534685 -65989893 + AT_rich Low_complexity Low_complexity 1 52 0 261 27 81 0 chr3 161534690 161534727 -65989851 + Tigger1 DNA MER2_type 2233 2272 -146 725 209 37 0 chr3 161534854 161534988 -65989590 + Tigger1 DNA MER2_type 2280 2418 0 1074 224 29 71 chr3 161534989 161535369 -65989209 - L1ME1 LINE L1 -5980 416 53 979 252 179 5 chr3 161535386 161535815 -65988763 + L1ME1 LINE L1 4846 5349 -797 2845 235 45 11 chr3 161535918 161536674 -65987904 + L1ME1 LINE L1 5373 6154 -12 342 0 0 0 chr3 161536712 161536750 -65987828 + (TTTTA)n Simple_repeat Simple_repeat 2 39 0 1822 162 13 13 chr3 161536752 161537055 -65987523 - AluJo SINE Alu -9 303 1 620 88 0 0 chr3 161537319 161537399 -65987179 + MER41B LTR ERV1 556 635 0 2849 132 7 9 chr3 161537697 161538101 -65986477 - MER65A LTR ERV1 0 445 41 202 56 56 0 chr3 161538101 161538137 -65986441 + (TTG)n Simple_repeat Simple_repeat 2 39 0 2849 132 7 9 chr3 161538137 161538178 -65986400 - MER65A LTR ERV1 -404 41 1 24 32 0 0 chr3 161538566 161538597 -65985981 + AT_rich Low_complexity Low_complexity 1 31 0 505 280 117 29 chr3 161538709 161538948 -65985630 + LTR67 LTR ERVL 5 264 -293 372 289 0 0 chr3 161538993 161539076 -65985502 + LTR67 LTR ERVL 403 485 -72 359 233 267 0 chr3 161539102 161539222 -65985356 + MER5A DNA MER1_type 26 177 -12 1623 165 78 2 chr3 161539325 161539651 -65984927 + L1MB2 LINE L1 5782 6127 -44 1979 136 7 0 chr3 161539651 161539968 -65984610 + AluSx SINE Alu 1 319 0 231 103 0 0 chr3 161539967 161540006 -65984572 + (CAAAT)n Simple_repeat Simple_repeat 2 40 0 2238 82 10 7 chr3 161540010 161540303 -65984275 + AluY SINE Alu 1 294 -17 4510 174 14 35 chr3 161540318 161541202 -65983376 + L1MD1 LINE L1 5374 6238 -4 225 0 0 0 chr3 161541202 161541227 -65983351 + (CA)n Simple_repeat Simple_repeat 2 26 0 247 396 9 0 chr3 161541682 161541793 -65982785 - LTR67 LTR ERVL -333 224 113 180 111 0 0 chr3 161542293 161542320 -65982258 + (ATG)n Simple_repeat Simple_repeat 2 28 0 608 232 54 32 chr3 161542345 161542530 -65982048 - MIR SINE MIR -10 252 64 227 186 0 100 chr3 161543816 161543851 -65980727 - MIR SINE MIR 0 262 236 1084 276 25 39 chr3 161543851 161544257 -65980321 + MER93a LTR ERV1 3 402 0 227 186 0 100 chr3 161544257 161544291 -65980287 - MIR SINE MIR -26 236 200 983 270 110 8 chr3 161546042 161546397 -65978181 + LTR16C LTR ERVL 99 489 -2 274 303 0 13 chr3 161548038 161548114 -65976464 - MER5A DNA MER1_type -1 188 114 244 333 26 34 chr3 161548039 161548156 -65976422 + MER5A DNA MER1_type 17 132 -57 * 22 0 0 0 chr3 161548182 161548204 -65976374 + AT_rich Low_complexity Low_complexity 1 22 0 202 54 27 27 chr3 161548210 161548247 -65976331 + (TTTTG)n Simple_repeat Simple_repeat 5 41 0 669 205 8 0 chr3 161548259 161548400 -65976178 - FLAM_A SINE Alu 0 142 1 264 229 0 0 chr3 161548419 161548467 -65976111 - L3 LINE CR1 -11 1566 1519 1087 273 190 18 chr3 161548588 161548911 -65975667 - MLT1K LTR MaLR 0 588 322 1813 114 9 95 chr3 161548911 161549236 -65975342 - AluSx SINE Alu -15 297 1 1087 273 190 18 chr3 161549236 161549406 -65975172 - MLT1K LTR MaLR -266 322 10 338 294 175 0 chr3 161550186 161550312 -65974266 + MER91A DNA MER1_type 1 148 -48 378 208 20 20 chr3 161550593 161550694 -65973884 + LTR33A LTR ERVL 1 101 -422 460 277 146 85 chr3 161550718 161551047 -65973531 + L2 LINE L2 2917 3265 -7 203 299 11 35 chr3 161551060 161551147 -65973431 - MIR SINE MIR -50 212 128 2224 122 0 0 chr3 161551191 161551486 -65973092 + AluSx SINE Alu 1 295 -17 709 290 36 13 chr3 161551652 161551876 -65972702 + MIR SINE MIR 32 260 -2 416 274 146 12 chr3 161551917 161552081 -65972497 - MER5A DNA MER1_type 0 189 4 400 299 44 20 chr3 161552948 161553152 -65971426 - HAL1 LINE L1 -21 2486 2278 2161 144 0 0 chr3 161553360 161553713 -65970865 - AluSx SINE Alu 0 353 1 455 230 58 58 chr3 161553801 161553992 -65970586 - HAL1 LINE L1 -343 2164 1974 228 252 281 0 chr3 161554338 161554473 -65970105 - HAL1 LINE L1 -623 1884 1712 272 277 79 0 chr3 161554551 161554652 -65969926 - Charlie7 DNA MER1_type -1074 1538 1430 683 300 37 17 chr3 161554668 161554965 -65969613 - Charlie7 DNA MER1_type -2309 303 1 1221 162 0 6 chr3 161555170 161555490 -65969088 + (TGGA)n Simple_repeat Simple_repeat 3 319 0 366 287 122 0 chr3 161555549 161555664 -65968914 + L2 LINE L2 3144 3272 0 183 208 0 57 chr3 161555941 161555994 -65968584 - MIR SINE MIR -96 166 117 228 230 257 14 chr3 161556013 161556087 -65968491 + MIR SINE MIR 30 122 -86 459 257 137 11 chr3 161556604 161556787 -65967791 + MIR SINE MIR 43 248 -14 22778 176 50 16 chr3 161557024 161558045 -65966533 + L1PA13 LINE L1 1 986 -6615 2525 75 0 0 chr3 161558045 161558353 -65966225 - AluY SINE Alu -3 308 1 22778 176 50 16 chr3 161558353 161564612 -65959966 + L1PA13 LINE L1 986 7600 -1 636 183 0 0 chr3 161564726 161564863 -65959715 + (TGGA)n Simple_repeat Simple_repeat 4 140 0 250 295 24 0 chr3 161565472 161565566 -65959012 + MER5B DNA MER1_type 63 147 -31 410 255 194 20 chr3 161565607 161565803 -65958775 + MIR SINE MIR 20 249 -13 1039 256 63 79 chr3 161566543 161566988 -65957590 - MLT1J LTR MaLR -73 438 1 1926 89 30 4 chr3 161566991 161567262 -65957316 + MER84 LTR ERVI 1 278 -229 876 183 70 32 chr3 161567264 161567311 -65957267 - MER34B LTR ERV1 -326 239 195 4900 152 56 10 chr3 161567311 161568175 -65956403 - MER4D LTR ERV1 0 903 1 876 183 70 32 chr3 161568175 161568313 -65956265 - MER34B LTR ERV1 -370 195 47 1612 144 66 12 chr3 161568654 161568911 -65955667 + MER57B LTR ERV1 1 271 -163 2905 67 103 0 chr3 161568915 161569321 -65955257 + LTR7 LTR ERV1 1 448 -2 19938 107 7 34 chr3 161569323 161572401 -65952177 + HERVH LTR ERV1 1 2995 -4718 5718 106 25 2 chr3 161572380 161573214 -65951364 + HERVH LTR ERV1 3140 3992 -3721 * 1215 109 49 0 chr3 161573217 161573401 -65951177 + HERVH LTR ERV1 4488 4680 -3033 * 14005 66 1 4 chr3 161573387 161575338 -65949240 + HERVH LTR ERV1 5769 7713 0 2949 64 103 0 chr3 161575338 161575744 -65948834 + LTR7 LTR ERV1 1 448 -2 931 122 19 6 chr3 161575749 161575905 -65948673 + MER57B LTR ERV1 274 431 -3 4248 131 7 48 chr3 161575907 161576623 -65947955 + LTR8 LTR ERV1 5 691 0 827 200 68 63 chr3 161577067 161577257 -65947321 + MER58A DNA MER1_type 1 191 -33 21 36 0 0 chr3 161577395 161577423 -65947155 + AT_rich Low_complexity Low_complexity 1 28 0 1856 259 31 27 chr3 161577453 161578039 -65946539 - L1ME3 LINE L1 -31 6131 5544 1841 131 3 0 chr3 161578661 161579005 -65945573 - AluSx SINE Alu 0 345 1 226 266 105 65 chr3 161579151 161579185 -65945393 - L2 LINE L2 -952 2362 2331 2166 155 22 19 chr3 161579185 161579546 -65945032 - MLT1A1 LTR MaLR -3 362 1 226 266 105 65 chr3 161579546 161579635 -65944943 - L2 LINE L2 -983 2331 2234 236 256 26 13 chr3 161580171 161580249 -65944329 + L2 LINE L2 3235 3313 0 242 208 21 0 chr3 161580258 161580306 -65944272 + (TGGA)n Simple_repeat Simple_repeat 4 52 0 365 222 41 0 chr3 161580320 161580491 -65944087 + (TGGA)n Simple_repeat Simple_repeat 1 178 0 806 289 184 8 chr3 161581438 161581942 -65942636 + L2 LINE L2 2687 3285 -28 2439 229 45 11 chr3 161581942 161582513 -65942065 - MLT1E LTR MaLR 0 593 3 806 289 184 8 chr3 161582513 161582540 -65942038 + L2 LINE L2 3285 3306 -7 180 299 45 15 chr3 161583263 161583330 -65941248 - L2 LINE L2 -4 3268 3200 186 310 0 28 chr3 161583558 161583629 -65940949 + MIR SINE MIR 81 149 -113 499 247 96 0 chr3 161584411 161584557 -65940021 + MER96 DNA MER1_type? 14 173 -2 807 123 16 0 chr3 161585116 161585238 -65939340 + MER31A LTR ERV1 362 485 0 532 319 71 4 chr3 161585562 161585788 -65938790 + MIR SINE MIR 22 262 0 196 143 71 36 chr3 161586051 161586107 -65938471 + L2 LINE L2 3033 3090 -182 2298 260 86 37 chr3 161586722 161587215 -65937363 + L1ME4a LINE L1 507 975 -5421 1221 230 49 7 chr3 161587215 161587502 -65937076 - AluJb SINE Alu -11 301 3 2298 260 86 37 chr3 161587502 161588024 -65936554 + L1ME4a LINE L1 975 1571 -4825 801 197 26 13 chr3 161588025 161588177 -65936401 + MER7C DNA MER2_type 1 154 -448 6787 217 35 29 chr3 161588182 161590672 -65933906 + L1ME4a LINE L1 3563 6062 -173 301 358 159 15 chr3 161590679 161590950 -65933628 - L2 LINE L2 -759 2555 2246 304 243 45 52 chr3 161591172 161591298 -65933280 + MIR SINE MIR 2 116 -92 239 295 0 0 chr3 161591553 161591614 -65932964 - L2 LINE L2 0 3313 3253 264 263 0 20 chr3 161592265 161592364 -65932214 + L1ME4a LINE L1 6094 6190 0 789 221 31 111 chr3 161593091 161593416 -65931162 - MLT1K LTR MaLR 0 588 290 269 254 127 40 chr3 161594189 161594315 -65930263 + MLT1K LTR MaLR 448 584 -4 23 97 0 0 chr3 161595765 161595837 -65928741 + GC_rich Low_complexity Low_complexity 1 72 0 208 253 11 81 chr3 161596155 161596366 -65928212 + C-rich Low_complexity Low_complexity 1 196 0 2275 71 17 0 chr3 161597203 161597500 -65927078 + AluSp SINE Alu 4 305 -8 841 270 48 12 chr3 161601406 161601658 -65922920 + MIR SINE MIR 2 262 0 2551 127 28 46 chr3 161602607 161603041 -65921537 - Tigger2a DNA MER2_type -2 432 7 401 353 45 6 chr3 161603817 161603973 -65920605 + L2 LINE L2 3109 3270 -2 315 241 68 38 chr3 161603990 161604123 -65920455 - MLT1L LTR MaLR -2 613 477 228 191 24 0 chr3 161604196 161604238 -65920340 - MLT1L LTR MaLR -368 247 205 696 256 123 23 chr3 161604307 161604659 -65919919 - MLT1J2 LTR MaLR -43 403 1 333 265 143 52 chr3 161605448 161605678 -65918900 - L2 LINE L2 -160 3112 2862 534 216 9 9 chr3 161606856 161606967 -65917611 + L2 LINE L2 3186 3296 -17 189 0 0 0 chr3 161606968 161606989 -65917589 + (TGAA)n Simple_repeat Simple_repeat 1 21 0 269 204 0 0 chr3 161606995 161607044 -65917534 - MIR SINE MIR -124 138 90 254 150 0 17 chr3 161607949 161608009 -65916569 - L1ME4a LINE L1 -2 6119 6061 610 321 101 28 chr3 161608624 161609048 -65915530 - L1MC4a LINE L1 -1911 5897 5443 1910 112 3 56 chr3 161609060 161609382 -65915196 - AluSq SINE Alu -8 305 1 271 325 17 26 chr3 161609969 161610086 -65914492 + MIR3 SINE MIR 5 120 -88 231 310 10 50 chr3 161610133 161610233 -65914345 + L3 LINE CR1 1323 1418 -159 205 265 105 114 chr3 161610292 161610511 -65914067 - L2 LINE L2 -85 3228 3012 536 237 0 25 chr3 161610648 161610766 -65913812 - L2 LINE L2 0 3313 3199 283 250 216 20 chr3 161610767 161610915 -65913663 - MLT1G LTR MaLR -13 577 366 2039 116 6 31 chr3 161612027 161612345 -65912233 - AluSx SINE Alu -2 310 1 318 298 71 0 chr3 161612513 161612597 -65911981 + L1MC4 LINE L1 6614 6703 -1339 213 208 0 42 chr3 161612597 161612645 -65911933 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 302 326 0 22 chr3 161612645 161612737 -65911841 - L1MC4 LINE L1 -1339 6703 6614 208 245 41 0 chr3 161612737 161612786 -65911792 + (CATATA)n Simple_repeat Simple_repeat 4 54 0 306 216 0 118 chr3 161612787 161612889 -65911689 - L1MC4 LINE L1 -1339 6703 6614 201 39 0 0 chr3 161612910 161612936 -65911642 + (TG)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr3 161613845 161613866 -65910712 + AT_rich Low_complexity Low_complexity 1 21 0 903 273 156 29 chr3 161614410 161614923 -65909655 + MLT1L LTR MaLR 38 615 0 760 263 126 54 chr3 161615146 161615607 -65908971 - MLT1J LTR MaLR -17 494 1 290 241 84 12 chr3 161615736 161615819 -65908759 + MIR3 SINE MIR 108 196 -12 396 322 14 28 chr3 161615938 161616081 -65908497 - MIR SINE MIR -8 254 114 2425 161 42 0 chr3 161616299 161616708 -65907870 - MSTB LTR MaLR 0 426 1 369 258 23 31 chr3 161617737 161617865 -65906713 - L1MC5 LINE L1 -60 7901 7775 220 91 76 0 chr3 161617865 161617931 -65906647 + (TA)n Simple_repeat Simple_repeat 2 72 0 1917 146 0 3 chr3 161617932 161618227 -65906351 - AluSx SINE Alu -18 294 1 328 239 43 51 chr3 161618298 161618415 -65906163 + L2 LINE L2 3155 3270 -2 333 291 14 50 chr3 161620282 161620423 -65904155 - MIR SINE MIR -113 149 14 281 303 0 0 chr3 161620514 161620580 -65903998 + (CA)n Simple_repeat Simple_repeat 2 67 0 436 269 62 58 chr3 161621251 161621459 -65903119 - MLT1H LTR MaLR -223 326 118 2120 91 34 7 chr3 161621644 161621941 -65902637 + AluSq SINE Alu 1 305 -8 183 156 0 0 chr3 161625136 161625168 -65899410 + CT-rich Low_complexity Low_complexity 2 33 0 1189 176 4 53 chr3 161625169 161625413 -65899165 - AluJb SINE Alu -20 292 61 351 100 0 0 chr3 161625592 161625642 -65898936 - Alu SINE Alu -252 50 1 405 333 61 0 chr3 161625668 161625815 -65898763 + L2 LINE L2 3117 3272 0 207 304 58 0 chr3 161627773 161627842 -65896736 + MIR SINE MIR 111 183 -79 469 308 156 9 chr3 161628271 161628482 -65896096 + L3 LINE CR1 1336 1577 0 1257 221 8 20 chr3 161628682 161628935 -65895643 + MIR SINE MIR 8 257 -5 387 314 108 14 chr3 161628959 161629182 -65895396 - L2 LINE L2 -164 3108 2865 411 240 20 135 chr3 161629285 161629485 -65895093 + MER5A DNA MER1_type 11 187 -2 484 252 66 62 chr3 161630175 161630417 -65894161 + Charlie8 DNA MER1_type 36 278 -2139 412 181 0 19 chr3 161630643 161630748 -65893830 + GA-rich Low_complexity Low_complexity 1 103 0 465 182 0 0 chr3 161631836 161631935 -65892643 + CT-rich Low_complexity Low_complexity 4 102 0 257 284 0 20 chr3 161631974 161632076 -65892502 + L1ME LINE L1 5658 5757 -364 22 0 0 0 chr3 161632134 161632156 -65892422 + AT_rich Low_complexity Low_complexity 1 22 0 351 0 0 0 chr3 161632183 161632222 -65892356 + (GA)n Simple_repeat Simple_repeat 1 39 0 324 0 0 0 chr3 161632221 161632257 -65892321 + (TG)n Simple_repeat Simple_repeat 2 37 0 * 264 214 23 13 chr3 161633369 161633483 -65891095 + HAL1b LINE L1 1249 1342 -6 186 43 0 0 chr3 161634900 161634923 -65889655 + (TTCA)n Simple_repeat Simple_repeat 4 26 0 915 183 0 0 chr3 161634924 161635077 -65889501 - FRAM SINE Alu -31 145 1 565 255 39 7 chr3 161635120 161635273 -65889305 - MIR SINE MIR -56 206 49 3237 81 2 25 chr3 161636551 161636994 -65887584 - MLT2A1 LTR ERVL -11 433 1 355 231 44 11 chr3 161637149 161637240 -65887338 + L2 LINE L2 3160 3253 -60 202 326 98 70 chr3 161638630 161639029 -65885549 - L2 LINE L2 -9 3263 2854 2026 156 26 0 chr3 161639912 161640251 -65884327 + MER7A DNA MER2_type 1 346 0 715 282 119 54 chr3 161640384 161640920 -65883658 - L1MC4a LINE L1 -1840 5968 5398 367 268 93 21 chr3 161640927 161641201 -65883377 - L1MC4a LINE L1 -748 5398 5145 271 250 165 89 chr3 161641490 161641738 -65882840 - MLT1K LTR MaLR -237 351 85 228 340 173 20 chr3 161642589 161642786 -65881792 + MIR SINE MIR 35 261 -1 204 333 0 0 chr3 161643654 161643717 -65880861 - MIR SINE MIR -65 143 81 254 289 50 41 chr3 161643857 161643978 -65880600 + MIR SINE MIR 93 214 -48 396 350 27 11 chr3 161645219 161645405 -65879173 - L2 LINE L2 -277 3036 2848 230 245 0 0 chr3 161645555 161645608 -65878970 + GA-rich Low_complexity Low_complexity 3 55 0 1390 246 38 52 chr3 161646089 161646494 -65878084 + L2 LINE L2 2757 3147 -166 282 29 0 0 chr3 161646494 161646529 -65878049 + (CA)n Simple_repeat Simple_repeat 2 36 0 1390 246 38 52 chr3 161646529 161646694 -65877884 + L2 LINE L2 3147 3313 0 545 339 122 39 chr3 161646690 161646988 -65877590 - L2 LINE L2 -713 2601 2329 * 2148 81 0 55 chr3 161646988 161647296 -65877282 - AluSc SINE Alu -18 291 1 545 339 122 39 chr3 161647296 161647631 -65876947 - L2 LINE L2 -985 2329 1916 396 252 38 46 chr3 161648149 161648280 -65876298 - MLT1J LTR MaLR -57 454 325 1224 155 10 0 chr3 161648550 161648743 -65875835 + MER2 DNA MER2_type 16 210 -135 265 239 84 14 chr3 161648772 161648843 -65875735 + MER2 DNA MER2_type 269 344 -1 373 239 43 0 chr3 161648967 161649059 -65875519 - L2 LINE L2 -4 3309 3214 1999 137 16 0 chr3 161649149 161649456 -65875122 - AluJo SINE Alu 0 312 1 185 41 41 61 chr3 161649511 161649560 -65875018 + (CAAAAA)n Simple_repeat Simple_repeat 1 48 0 273 284 148 52 chr3 161650517 161650901 -65873677 - L2 LINE L2 -349 2965 2545 228 316 29 35 chr3 161651802 161651976 -65872602 - L1ME LINE L1 -206 5915 5743 1464 238 163 38 chr3 161652524 161652626 -65871952 - MER20B DNA MER1_type -4 779 691 1751 162 0 7 chr3 161652626 161652910 -65871668 + AluJb SINE Alu 1 282 -30 216 0 0 0 chr3 161652910 161652934 -65871644 + (TGAA)n Simple_repeat Simple_repeat 3 26 0 1464 238 163 38 chr3 161652934 161653522 -65871056 - MER20B DNA MER1_type -91 692 1 255 292 80 18 chr3 161654346 161654459 -65870119 + MIR SINE MIR 131 250 -12 478 190 256 72 chr3 161654702 161654897 -65869681 + MIR SINE MIR 12 242 -20 417 259 110 41 chr3 161655398 161655688 -65868890 - L1MC4a LINE L1 -1667 6141 5832 988 191 50 55 chr3 161657649 161657869 -65866709 - MER58A DNA MER1_type -4 220 2 21 0 0 0 chr3 161658758 161658779 -65865799 + AT_rich Low_complexity Low_complexity 1 21 0 297 186 0 17 chr3 161659395 161659454 -65865124 - MLT1A1 LTR MaLR -307 58 1 2008 85 58 7 chr3 161659716 161659842 -65864736 + AluY SINE Alu 1 119 -192 276 30 0 0 chr3 161659842 161659875 -65864703 + (TA)n Simple_repeat Simple_repeat 2 34 0 2008 85 58 7 chr3 161659875 161660043 -65864535 + AluY SINE Alu 119 310 -1 218 306 9 36 chr3 161660085 161660196 -65864382 + (CAGT)n Simple_repeat Simple_repeat 4 111 0 540 276 92 50 chr3 161662709 161662843 -65861735 + MIR SINE MIR 6 156 -106 1753 170 6 6 chr3 161662843 161663154 -65861424 + AluJo SINE Alu 1 311 -1 540 276 92 50 chr3 161663154 161663258 -65861320 + MIR SINE MIR 156 254 -8 805 142 23 209 chr3 161663340 161663512 -65861066 - MLT1A2 LTR MaLR -49 342 173 412 225 72 124 chr3 161664115 161664324 -65860254 + MIR SINE MIR 53 250 -12 932 222 227 11 chr3 161664553 161664905 -65859673 - LTR16A LTR ERVL -5 445 18 281 307 45 39 chr3 161664942 161665121 -65859457 + MLT1J LTR MaLR 1 180 -331 317 268 78 59 chr3 161665239 161665392 -65859186 + MIR SINE MIR 2 157 -105 653 174 0 17 chr3 161665421 161665536 -65859042 - MER81 DNA DNA -1 113 1 1531 130 0 28 chr3 161665945 161666192 -65858386 + L1PA15 LINE L1 5926 6165 0 2064 289 38 63 chr3 161666195 161667301 -65857277 - L2 LINE L2 -78 3235 2164 197 400 0 0 chr3 161667306 161667381 -65857197 - L2 LINE L2 -20 3252 3178 339 240 8 91 chr3 161667448 161667569 -65857009 - MIR3 SINE MIR -6 202 92 779 187 15 20 chr3 161667807 161667984 -65856594 + L1M4 LINE L1 5195 5372 -774 2319 91 0 0 chr3 161667984 161668292 -65856286 + AluY SINE Alu 1 308 -3 779 187 15 20 chr3 161668292 161668312 -65856266 + L1M4 LINE L1 5372 5391 -755 518 43 0 14 chr3 161668312 161668382 -65856196 + (GAAA)n Simple_repeat Simple_repeat 3 71 0 575 133 6 10 chr3 161668382 161668482 -65856096 + L1ME LINE L1 5353 5452 -718 293 247 35 12 chr3 161670816 161670901 -65853677 + MLT1A1 LTR MaLR 39 125 -442 3226 158 20 5 chr3 161670914 161671471 -65853107 + L1MC3 LINE L1 7220 7784 -1 243 283 173 59 chr3 161671790 161672334 -65852244 + L2 LINE L2 2140 2745 -569 219 298 53 61 chr3 161672820 161672934 -65851644 + MIR SINE MIR 13 125 -137 2496 125 96 0 chr3 161672957 161673341 -65851237 + MSTC LTR MaLR 1 421 -7 1128 80 11 6 chr3 161676678 161676853 -65847725 + (TTCC)n Simple_repeat Simple_repeat 3 178 0 305 179 368 0 chr3 161677266 161677361 -65847217 - MER5A DNA MER1_type -3 186 57 339 259 29 50 chr3 161677510 161677649 -65846929 + MIR SINE MIR 117 252 -10 509 226 124 28 chr3 161678095 161678272 -65846306 + L2 LINE L2 3119 3312 -1 893 163 0 0 chr3 161678842 161678977 -65845601 - AluJo SINE Alu -176 136 2 482 227 78 49 chr3 161679027 161679234 -65845344 - MER20B DNA MER1_type -3 216 2 913 187 59 64 chr3 161679924 161679970 -65844608 + MLT1A1 LTR MaLR 164 209 -156 2400 67 7 10 chr3 161679970 161680267 -65844311 - AluY SINE Alu -15 296 1 913 187 59 64 chr3 161680267 161680423 -65844155 + MLT1A1 LTR MaLR 209 365 0 4011 128 57 29 chr3 161682077 161682774 -65841804 - LTR62 LTR ERVK -2 717 1 1902 176 67 20 chr3 161683302 161683706 -65840872 + MER66B LTR ERV1 64 486 0 2554 176 61 72 chr3 161683838 161684312 -65840266 + Charlie1a DNA MER1_type 24 491 -2270 3832 58 4 0 chr3 161684312 161684791 -65839787 - L1PA8 LINE L1 -2 6170 5690 2554 176 61 72 chr3 161684791 161684959 -65839619 + Charlie1a DNA MER1_type 491 659 -796 1335 184 109 11 chr3 161685161 161685427 -65839151 - AluJo SINE Alu -17 295 4 1397 139 40 0 chr3 161685890 161686113 -65838465 + MER46A DNA MER2_type 4 235 -1 1031 174 0 0 chr3 161686125 161686292 -65838286 - FRAM SINE Alu -10 166 1 314 281 12 0 chr3 161686340 161686422 -65838156 - MLT1L LTR MaLR -532 83 1 317 288 69 78 chr3 161686848 161686908 -65837670 + L1P5 LINE L1 5281 5340 -816 2344 99 51 20 chr3 161686908 161687261 -65837317 - THE1B LTR MaLR 0 364 1 12232 86 5 1 chr3 161687261 161688834 -65835744 - THE1B-int LTR MaLR 0 1580 2 2252 113 54 23 chr3 161688835 161689188 -65835390 - THE1B LTR MaLR 0 364 1 317 288 69 78 chr3 161689188 161689430 -65835148 + L1P5 LINE L1 5338 5583 -573 2178 166 10 50 chr3 161690288 161690686 -65833892 + MLT1B LTR MaLR 1 382 -8 355 286 6 82 chr3 161691220 161691402 -65833176 + L2 LINE L2 3019 3186 -86 2005 139 7 0 chr3 161691444 161691731 -65832847 + AluSx SINE Alu 1 289 -23 265 183 305 0 chr3 161692716 161692798 -65831780 + L2 LINE L2 3199 3305 -8 314 257 138 0 chr3 161693513 161693622 -65830956 + L2 LINE L2 3189 3312 -1 42043 52 18 3 chr3 161693914 161699964 -65824614 - L1PA5 LINE L1 0 6154 12 2179 90 13 23 chr3 161700251 161700552 -65824026 - AluSp SINE Alu -15 298 1 1583 148 93 31 chr3 161701403 161701694 -65822884 + AluJb SINE Alu 1 309 -3 303 250 50 20 chr3 161702019 161702119 -65822459 + MER81 DNA DNA 1 103 -11 198 0 0 0 chr3 161702615 161702637 -65821941 + (T)n Simple_repeat Simple_repeat 1 22 0 2285 181 32 44 chr3 161704020 161704249 -65820329 - MLT1D LTR MaLR -7 498 268 1937 166 0 16 chr3 161704249 161704563 -65820015 - AluJb SINE Alu -3 309 1 2285 181 32 44 chr3 161704563 161704837 -65819741 - MLT1D LTR MaLR -237 268 1 333 274 0 0 chr3 161705733 161705817 -65818761 - MER20B DNA MER1_type -693 90 7 431 228 168 0 chr3 161706042 161706191 -65818387 - MER5B DNA MER1_type 0 178 5 306 0 0 0 chr3 161706672 161706706 -65817872 + (TG)n Simple_repeat Simple_repeat 1 34 0 594 257 96 50 chr3 161707399 161707870 -65816708 + LTR33A LTR ERVL 2 523 0 337 244 81 52 chr3 161708624 161708796 -65815782 + HAL1 LINE L1 5 181 -2326 186 43 0 0 chr3 161709348 161709371 -65815207 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 233 293 93 0 chr3 161709375 161709450 -65815128 + HAL1 LINE L1 788 869 -1638 1232 131 0 6 chr3 161709461 161709636 -65814942 + AluSg/x SINE Alu 123 296 -13 558 220 166 48 chr3 161709732 161710045 -65814533 + HAL1 LINE L1 978 1327 -1180 262 211 97 61 chr3 161710184 161710298 -65814280 - HAL1 LINE L1 -354 2153 2036 465 289 96 27 chr3 161710446 161710706 -65813872 - HAL1 LINE L1 -744 1763 1486 366 270 178 0 chr3 161710773 161710936 -65813642 + HAL1 LINE L1 2312 2503 -4 1387 143 73 62 chr3 161711361 161711633 -65812945 + AluJo SINE Alu 30 304 -8 320 218 104 62 chr3 161711973 161712176 -65812402 - L2 LINE L2 -85 3228 2974 186 103 0 0 chr3 161712861 161712890 -65811688 + (CAAA)n Simple_repeat Simple_repeat 1 29 0 215 321 12 0 chr3 161713056 161713140 -65811438 + CT-rich Low_complexity Low_complexity 1 85 0 222 276 0 17 chr3 161713425 161713483 -65811095 + GA-rich Low_complexity Low_complexity 4 60 0 192 77 0 0 chr3 161713596 161713622 -65810956 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 273 314 93 0 chr3 161716207 161716325 -65808253 + MER91A DNA MER1_type 68 196 0 288 269 103 22 chr3 161716922 161717196 -65807382 - L1MC/D LINE L1 -650 5518 5263 1596 120 165 0 chr3 161717413 161717679 -65806899 - AluSx SINE Alu -2 310 1 1420 174 0 81 chr3 161718424 161718758 -65805820 - L1MB8 LINE L1 -6 6172 5866 979 279 114 8 chr3 161718909 161719285 -65805293 - MLT1L LTR MaLR -4 611 196 260 169 0 68 chr3 161719357 161719416 -65805162 - MLT1L LTR MaLR -560 55 1 2056 149 0 0 chr3 161719544 161719845 -65804733 + AluJo SINE Alu 1 301 -11 646 241 92 16 chr3 161719845 161720094 -65804484 + MER113 DNA MER1_type? 91 358 -163 277 197 14 28 chr3 161720276 161720347 -65804231 - MER116 DNA Mariner -10 70 1 24 0 0 0 chr3 161720403 161720427 -65804151 + AT_rich Low_complexity Low_complexity 1 24 0 198 272 40 80 chr3 161720536 161720576 -65804002 + MIR3 SINE MIR 81 121 -87 1008 191 48 9 chr3 161720576 161720786 -65803792 - MER20 DNA MER1_type -1 218 1 198 272 40 80 chr3 161720786 161720870 -65803708 + MIR3 SINE MIR 121 200 -8 260 318 11 0 chr3 161721250 161721338 -65803240 + MIR SINE MIR 29 117 -91 297 196 0 0 chr3 161722371 161722427 -65802151 - MIR SINE MIR -8 254 199 381 309 40 7 chr3 161722834 161722986 -65801592 - MIR SINE MIR -59 203 47 2377 254 13 91 chr3 161723058 161724038 -65800540 + L1 LINE L1 4404 5307 -839 691 108 0 0 chr3 161724041 161724134 -65800444 + AluS SINE Alu 2 94 -219 3139 154 21 33 chr3 161724134 161724301 -65800277 + L1MB8 LINE L1 5146 5313 -871 2337 96 3 0 chr3 161724301 161724603 -65799975 + AluSp SINE Alu 11 313 0 3139 154 21 33 chr3 161724603 161725133 -65799445 + L1MB8 LINE L1 5313 5842 -342 2587 133 65 0 chr3 161725133 161725532 -65799046 - MSTC LTR MaLR 0 428 4 1062 229 8 11 chr3 161725532 161725794 -65798784 + L1MB8 LINE L1 5905 6165 -13 228 247 0 65 chr3 161725806 161725883 -65798695 - L2 LINE L2 -1481 1833 1762 199 293 61 10 chr3 161727359 161727458 -65797120 - L3 LINE CR1 -370 1207 1104 526 245 59 64 chr3 161727477 161727681 -65796897 + MIR SINE MIR 8 210 -52 1397 210 88 20 chr3 161729983 161730335 -65794243 - MLT1J1 LTR MaLR -8 438 63 2390 107 0 0 chr3 161730937 161731246 -65793332 - AluSc SINE Alu 0 309 1 2076 112 46 11 chr3 161731253 161731538 -65793040 - AluJb SINE Alu -17 295 1 2185 109 3 13 chr3 161732262 161732564 -65792014 + AluSq SINE Alu 1 299 -14 1769 152 42 0 chr3 161733743 161734026 -65790552 + AluSx SINE Alu 1 295 -17 462 297 103 0 chr3 161734547 161734732 -65789846 - L1ME4a LINE L1 -200 5921 5718 229 309 71 0 chr3 161734851 161734935 -65789643 + MER5A DNA MER1_type 100 189 0 251 315 0 0 chr3 161735125 161735217 -65789361 - MIR SINE MIR -62 146 55 254 209 71 51 chr3 161737305 161737799 -65786779 + L1MD3 LINE L1 5450 5933 -2062 1767 152 34 10 chr3 161737799 161738096 -65786482 + AluJo SINE Alu 1 304 -8 254 209 71 51 chr3 161738096 161738495 -65786083 + L1MD3 LINE L1 5933 7994 -1 209 184 0 0 chr3 161741733 161741771 -65782807 - L3 LINE CR1 -2 1575 1538 617 198 52 0 chr3 161742004 161742120 -65782458 + FLAM_A SINE Alu 1 122 -11 233 299 26 0 chr3 161742311 161742388 -65782190 + MIR SINE MIR 71 149 -113 196 338 26 26 chr3 161742819 161742896 -65781682 + MIR SINE MIR 15 91 -171 318 50 0 0 chr3 161745545 161745585 -65778993 + (TG)n Simple_repeat Simple_repeat 2 41 0 22 0 0 0 chr3 161745628 161745650 -65778928 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 161747998 161748026 -65776552 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 161748162 161748184 -65776394 + AT_rich Low_complexity Low_complexity 1 22 0 28 48 0 0 chr3 161750312 161750354 -65774224 + AT_rich Low_complexity Low_complexity 1 42 0 225 150 50 0 chr3 161750618 161750658 -65773920 - L2 LINE L2 -7 3265 3224 1949 148 0 28 chr3 161750768 161751086 -65773492 + AluJo SINE Alu 1 309 -3 245 250 174 11 chr3 161752220 161752312 -65772266 - L2 LINE L2 -16 3256 3150 2381 92 0 22 chr3 161753896 161754211 -65770367 - AluSc SINE Alu -1 308 1 219 217 0 0 chr3 161758843 161758889 -65765689 + L2 LINE L2 3211 3256 -16 463 234 0 0 chr3 161759288 161759382 -65765196 + MER5A DNA MER1_type 14 107 -82 1410 208 99 21 chr3 161760432 161760864 -65763714 + MLT1C LTR MaLR 2 467 0 193 316 105 15 chr3 161760869 161761002 -65763576 - MER5A DNA MER1_type -10 179 35 * 260 246 110 8 chr3 161760886 161761004 -65763574 + MER5A DNA MER1_type 39 168 -21 423 282 13 67 chr3 161761556 161761583 -65762995 + MER5B DNA MER1_type 35 62 -116 2201 105 10 3 chr3 161761583 161761888 -65762690 + AluSc SINE Alu 1 307 -2 423 282 13 67 chr3 161761888 161762009 -65762569 + MER5B DNA MER1_type 62 175 -3 1810 128 203 11 chr3 161762839 161763198 -65761380 - MSTA LTR MaLR 0 428 1 182 376 18 9 chr3 161763370 161763479 -65761099 + MIR SINE MIR 33 142 -66 2299 89 3 3 chr3 161763553 161763844 -65760734 + AluSp SINE Alu 1 291 -22 441 182 126 14 chr3 161764895 161765038 -65759540 - MIR SINE MIR 0 262 104 803 159 0 23 chr3 161765139 161765271 -65759307 - FLAM_C SINE Alu 0 133 5 216 0 0 0 chr3 161765343 161765367 -65759211 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 28 0 0 0 chr3 161766715 161766743 -65757835 + AT_rich Low_complexity Low_complexity 1 28 0 380 287 64 25 chr3 161767231 161767388 -65757190 - MIR SINE MIR -53 209 47 1804 157 3 13 chr3 161768090 161768390 -65756188 + AluJo SINE Alu 6 302 -10 264 59 0 0 chr3 161768481 161768515 -65756063 + (TG)n Simple_repeat Simple_repeat 1 34 0 188 278 43 96 chr3 161768557 161768672 -65755906 - L2 LINE L2 -12 3260 3152 625 255 113 21 chr3 161768758 161768997 -65755581 - MIR SINE MIR 0 262 2 316 263 38 45 chr3 161769326 161769459 -65755119 - MER91A DNA MER1_type 0 196 65 581 294 113 20 chr3 161769656 161769860 -65754718 + MIR SINE MIR 32 254 -8 396 288 278 8 chr3 161771006 161771398 -65753180 - L2 LINE L2 -1 3312 2815 187 173 120 0 chr3 161772218 161772284 -65752294 + MIR SINE MIR 94 145 -63 2128 78 46 11 chr3 161772342 161772624 -65751954 - AluSq SINE Alu -21 292 1 380 292 60 56 chr3 161772862 161773078 -65751500 - L2 LINE L2 -22 3291 3075 260 243 129 77 chr3 161773342 161773783 -65750795 - L2 LINE L2 -2 3311 2848 337 250 11 11 chr3 161774137 161774225 -65750353 - MIR SINE MIR -34 228 141 466 176 194 29 chr3 161774237 161774407 -65750171 - MLT1F LTR MaLR -4 538 341 251 261 29 0 chr3 161774409 161774478 -65750100 - MLT1G LTR MaLR -481 109 39 392 252 29 0 chr3 161774554 161774657 -65749921 - MIR SINE MIR -130 132 27 435 280 14 7 chr3 161775644 161775787 -65748791 + MER115 DNA AcHobo 57 200 -493 1388 243 69 20 chr3 161775819 161776210 -65748368 + MER115 DNA AcHobo 279 688 -5 486 254 9 0 chr3 161776564 161776674 -65747904 + MER81 DNA DNA 4 114 0 356 271 0 62 chr3 161777366 161777495 -65747083 - MLT1K LTR MaLR -105 483 363 193 29 59 0 chr3 161778416 161778450 -65746128 + (TA)n Simple_repeat Simple_repeat 2 37 0 412 286 38 58 chr3 161778477 161778672 -65745906 - L1MC4a LINE L1 -202 5919 5744 1949 147 0 3 chr3 161779765 161780057 -65744521 - AluJo SINE Alu -20 292 2 1474 110 85 8 chr3 161780828 161781098 -65743480 - L1MA4 LINE L1 -112 6188 5900 292 245 98 20 chr3 161781909 161782011 -65742567 - HsTC2 DNA Tc2 -331 1567 1282 180 185 56 37 chr3 161782047 161782101 -65742477 + L2 LINE L2 3247 3301 -12 450 0 0 0 chr3 161782282 161782332 -65742246 + (TGGA)n Simple_repeat Simple_repeat 4 53 0 2137 112 7 0 chr3 161783218 161783503 -65741075 + AluSx SINE Alu 1 287 -25 208 121 0 0 chr3 161783503 161783536 -65741042 + (CTAA)n Simple_repeat Simple_repeat 2 34 0 261 0 0 0 chr3 161784000 161784029 -65740549 + (GA)n Simple_repeat Simple_repeat 2 30 0 2703 91 13 11 chr3 161784459 161784833 -65739745 - THE1C LTR MaLR 0 375 1 254 344 6 25 chr3 161785651 161785811 -65738767 + GA-rich Low_complexity Low_complexity 2 158 0 254 270 18 27 chr3 161785889 161786000 -65738578 + GA-rich Low_complexity Low_complexity 3 112 0 74 24 0 0 chr3 161786004 161786087 -65738491 + GC_rich Low_complexity Low_complexity 1 83 0 297 100 0 0 chr3 161786087 161786137 -65738441 + (G)n Simple_repeat Simple_repeat 1 50 0 238 220 140 20 chr3 161786612 161786712 -65737866 - MIR SINE MIR -76 132 21 373 203 0 0 chr3 161786758 161786817 -65737761 - MER58 DNA MER1_type 0 2420 2362 1388 144 93 52 chr3 161786821 161787248 -65737330 - LTR54B LTR ERV1 -6 492 1 518 169 81 7 chr3 161787248 161787384 -65737194 - MER58 DNA MER1_type -55 2365 2220 934 196 30 30 chr3 161787394 161787486 -65737092 - MER58 DNA MER1_type -2201 219 128 15496 118 39 2 chr3 161787486 161789812 -65734766 - Tigger1 DNA MER2_type -2 2416 5 934 196 30 30 chr3 161789812 161789918 -65734660 - MER58 DNA MER1_type -2291 129 21 240 297 77 11 chr3 161789959 161790050 -65734528 + MER102b DNA MER1_type 9 105 -236 254 216 171 45 chr3 161790281 161790392 -65734186 - L1MC5 LINE L1 -37 7924 7800 817 219 125 56 chr3 161790595 161791042 -65733536 - L1MC5 LINE L1 -182 7779 7302 380 236 128 124 chr3 161791042 161791300 -65733278 + MER102b DNA MER1_type 82 340 -1 198 0 0 0 chr3 161791895 161791917 -65732661 + (T)n Simple_repeat Simple_repeat 1 22 0 735 230 58 35 chr3 161792586 161792812 -65731766 - MIR SINE MIR -1 261 31 21 36 0 0 chr3 161793517 161793545 -65731033 + AT_rich Low_complexity Low_complexity 1 28 0 29 0 0 0 chr3 161794206 161794235 -65730343 + GC_rich Low_complexity Low_complexity 1 29 0 204 59 0 59 chr3 161794381 161794415 -65730163 + (CGGGG)n Simple_repeat Simple_repeat 5 36 0 27 29 0 0 chr3 161794574 161794608 -65729970 + GC_rich Low_complexity Low_complexity 1 34 0 505 201 31 100 chr3 161795282 161795511 -65729067 - MER112 DNA MER1_type -7 253 41 493 323 44 32 chr3 161795523 161795771 -65728807 + MIR SINE MIR 12 262 0 186 286 83 12 chr3 161796139 161796223 -65728355 + MIR SINE MIR 40 129 -79 226 341 33 0 chr3 161796250 161796341 -65728237 - MIR SINE MIR -84 124 31 296 237 9 88 chr3 161796508 161796622 -65727956 - MIR SINE MIR 0 262 158 184 359 68 10 chr3 161799178 161799281 -65725297 + MIR SINE MIR 31 139 -69 227 284 30 15 chr3 161799518 161799585 -65724993 - MER5A DNA MER1_type 0 189 122 2221 122 0 3 chr3 161800172 161800476 -65724102 + AluSx SINE Alu 1 303 -9 2406 88 0 7 chr3 161800944 161801250 -65723328 - AluSq SINE Alu -5 308 5 214 244 0 0 chr3 161801473 161801518 -65723060 - L2 LINE L2 -4 3309 3265 369 256 95 7 chr3 161802272 161802409 -65722169 - MIR3 SINE MIR -31 177 29 2570 60 0 10 chr3 161804643 161804957 -65719621 + AluY SINE Alu 1 311 0 1022 181 84 0 chr3 161805143 161805380 -65719198 + L1MB7 LINE L1 5092 5348 -798 316 216 40 27 chr3 161805397 161805471 -65719107 + L1PB4 LINE L1 6055 6129 -27 * 2497 169 185 60 chr3 161805470 161806138 -65718440 + L1MB7 LINE L1 5343 6115 -69 2354 85 3 31 chr3 161806138 161806456 -65718122 + AluSq SINE Alu 1 309 -4 2497 169 185 60 chr3 161806456 161806534 -65718044 + L1MB7 LINE L1 6115 6182 -2 22 0 0 0 chr3 161806634 161806656 -65717922 + AT_rich Low_complexity Low_complexity 1 22 0 3985 180 57 9 chr3 161806660 161808102 -65716476 - L1PB4 LINE L1 -16 6140 4628 6599 125 19 29 chr3 161808114 161809472 -65715106 - L1MA4 LINE L1 -5 6295 4942 222 37 0 0 chr3 161809472 161809499 -65715079 + (T)n Simple_repeat Simple_repeat 1 27 0 10476 156 29 33 chr3 161810884 161811635 -65712943 - L1MA4 LINE L1 -1178 4968 4215 180 0 0 0 chr3 161811635 161811655 -65712923 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 10476 156 29 33 chr3 161811655 161812964 -65711614 - L1MA4 LINE L1 -1931 4215 2917 2568 50 0 0 chr3 161813574 161813871 -65710707 - AluY SINE Alu -14 297 1 384 330 35 17 chr3 161813871 161813986 -65710592 - L2 LINE L2 -22 3250 3134 303 175 0 0 chr3 161815414 161815471 -65709107 + A-rich Low_complexity Low_complexity 1 57 0 2259 120 3 0 chr3 161815583 161815891 -65708687 - AluSq SINE Alu -4 309 1 1581 157 41 19 chr3 161816788 161817075 -65707503 + AluJo SINE Alu 11 303 0 524 250 18 0 chr3 161817644 161817937 -65706641 + FLAM_A SINE Alu 1 295 0 510 161 0 0 chr3 161817940 161818033 -65706545 + GA-rich Low_complexity Low_complexity 1 93 0 1082 176 42 28 chr3 161818200 161818416 -65706162 + MER20 DNA MER1_type 1 219 0 23 33 0 0 chr3 161819280 161819310 -65705268 + AT_rich Low_complexity Low_complexity 1 30 0 321 288 24 71 chr3 161820639 161820809 -65703769 + MLT1L LTR MaLR 1 162 -453 302 167 19 0 chr3 161820900 161820954 -65703624 - MADE1 DNA Mariner 0 80 26 840 159 0 14 chr3 161821214 161821359 -65703219 - FLAM_C SINE Alu 0 143 1 1583 169 3 47 chr3 161821564 161821865 -65702713 - AluJo SINE Alu -24 288 1 2292 76 40 7 chr3 161822788 161823089 -65701489 + AluY SINE Alu 1 311 0 311 259 6 141 chr3 161823902 161824030 -65700548 - MIR SINE MIR -25 237 136 1949 138 40 0 chr3 161824030 161824326 -65700252 + AluJb SINE Alu 3 310 -2 311 259 6 141 chr3 161824326 161824367 -65700211 - MIR SINE MIR -126 136 91 209 254 60 15 chr3 161824622 161824689 -65699889 - L2 LINE L2 -932 2382 2313 622 276 118 105 chr3 161825663 161826823 -65697755 - L1M2 LINE L1 -5442 1407 378 21 0 0 0 chr3 161827607 161827628 -65696950 + AT_rich Low_complexity Low_complexity 1 21 0 198 0 0 0 chr3 161829269 161829291 -65695287 + (A)n Simple_repeat Simple_repeat 1 22 0 431 226 136 73 chr3 161829643 161829820 -65694758 + MIR SINE MIR 5 192 -70 341 308 50 117 chr3 161830124 161830465 -65694113 + L2 LINE L2 2937 3254 -18 381 275 33 0 chr3 161831486 161831577 -65693001 + MIR3 SINE MIR 87 180 -28 196 209 48 114 chr3 161831915 161832020 -65692558 - MIR3 SINE MIR -9 199 102 186 379 163 0 chr3 161832322 161832475 -65692103 - MER5B DNA MER1_type 0 178 1 1302 249 50 69 chr3 161832836 161833333 -65691245 - L1MC4a LINE L1 -1884 5924 5440 2020 90 49 0 chr3 161833333 161833600 -65690978 - AluSc SINE Alu -29 280 1 1302 249 50 69 chr3 161833600 161833724 -65690854 - L1MC4a LINE L1 -2368 5440 5315 890 207 26 65 chr3 161834057 161834289 -65690289 - MIR SINE MIR -34 228 6 553 290 112 14 chr3 161834305 161834897 -65689681 + L1MC4a LINE L1 5255 5913 -209 7378 35 6 10 chr3 161835023 161836269 -65688309 + L1PA5 LINE L1 4913 6154 0 23 68 0 0 chr3 161836314 161836358 -65688220 + AT_rich Low_complexity Low_complexity 1 44 0 1426 163 8 45 chr3 161836557 161836821 -65687757 + AluJo SINE Alu 44 297 -15 329 279 224 17 chr3 161837039 161837218 -65687360 - MIR SINE MIR -6 256 41 222 150 0 0 chr3 161837496 161837536 -65687042 + (CA)n Simple_repeat Simple_repeat 2 41 0 2096 93 32 0 chr3 161838543 161838823 -65685755 - AluSc SINE Alu -20 289 1 414 250 157 21 chr3 161839429 161839569 -65685009 + MIR SINE MIR 98 256 -6 29 0 0 0 chr3 161839784 161839813 -65684765 + AT_rich Low_complexity Low_complexity 1 29 0 285 267 116 14 chr3 161839972 161840118 -65684460 - Charlie8 DNA MER1_type -2254 163 3 459 292 204 9 chr3 161840346 161840562 -65684016 - MIR SINE MIR -2 260 3 1174 168 53 18 chr3 161840901 161841127 -65683451 + MER46A DNA MER2_type 3 236 0 293 281 91 25 chr3 161841965 161842086 -65682492 + MIR SINE MIR 124 252 -10 271 269 8 34 chr3 161842138 161842257 -65682321 + (CATA)n Simple_repeat Simple_repeat 4 119 0 354 260 326 31 chr3 161842493 161842751 -65681827 + L2 LINE L2 2979 3312 -1 1786 253 97 61 chr3 161843086 161844261 -65680317 + L2 LINE L2 2080 3308 -5 329 306 60 92 chr3 161844407 161844688 -65679890 - L2 LINE L2 -340 2974 2703 192 40 0 0 chr3 161844703 161844728 -65679850 + (TG)n Simple_repeat Simple_repeat 2 26 0 2151 137 0 9 chr3 161845565 161845880 -65678698 + AluJb SINE Alu 1 312 0 22 35 0 0 chr3 161845918 161845947 -65678631 + AT_rich Low_complexity Low_complexity 1 29 0 296 319 0 0 chr3 161846252 161846343 -65678235 - LTR67 LTR ERVL -36 521 431 316 284 23 23 chr3 161846732 161846820 -65677758 - LTR67 LTR ERVL -356 201 114 245 197 42 42 chr3 161846760 161846831 -65677747 - MLT1J LTR MaLR -342 169 99 * 1777 153 29 16 chr3 161847306 161847614 -65676964 - AluJo SINE Alu 0 312 1 288 296 176 0 chr3 161849073 161849198 -65675380 - MIR3 SINE MIR -25 183 37 2203 274 187 23 chr3 161849344 161850897 -65673681 - L2 LINE L2 -4 3309 1494 2345 108 0 6 chr3 161851717 161852032 -65672546 + AluSq SINE Alu 1 313 0 23 33 0 0 chr3 161852202 161852232 -65672346 + AT_rich Low_complexity Low_complexity 1 30 0 906 196 97 39 chr3 161852921 161853276 -65671302 + L1ME2 LINE L1 5059 5434 -728 596 195 63 38 chr3 161853292 161853451 -65671127 + L1ME2 LINE L1 5931 6093 -71 * 2227 211 115 12 chr3 161853446 161854107 -65670471 + L1ME2 LINE L1 5443 6332 -2 47 67 0 0 chr3 161854114 161854203 -65670375 + AT_rich Low_complexity Low_complexity 1 89 0 2343 101 0 0 chr3 161854556 161854852 -65669726 + AluSc SINE Alu 1 296 -13 2353 36 0 4 chr3 161854860 161855141 -65669437 + L1PA5 LINE L1 5866 6145 -9 31 96 0 0 chr3 161855141 161855235 -65669343 + AT_rich Low_complexity Low_complexity 1 94 0 198 369 23 80 chr3 161855532 161855708 -65668870 + L2 LINE L2 3015 3180 -92 2078 112 10 16 chr3 161855709 161856012 -65668566 - AluSx SINE Alu -11 301 1 2443 86 0 0 chr3 161856687 161856989 -65667589 + AluSq SINE Alu 1 302 -11 47 61 0 0 chr3 161858871 161858953 -65665625 + AT_rich Low_complexity Low_complexity 1 82 0 206 71 0 48 chr3 161858953 161858995 -65665583 + (TTTTG)n Simple_repeat Simple_repeat 4 43 0 538 203 16 0 chr3 161858999 161859127 -65665451 - Charlie1 DNA MER1_type 0 2761 2632 339 100 0 0 chr3 161859139 161859189 -65665389 + MADE1 DNA Mariner 1 50 -30 1539 162 54 11 chr3 161859196 161859547 -65665031 - Charlie1 DNA MER1_type -138 2623 2258 201 343 130 9 chr3 161859702 161859810 -65664768 - L2 LINE L2 -56 3216 3096 34 45 0 15 chr3 161860465 161860497 -65664081 + AT_rich Low_complexity Low_complexity 1 32 -33 1668 165 3 72 chr3 161860497 161860831 -65663747 + AluJo SINE Alu 1 311 -1 34 45 0 15 chr3 161860831 161860864 -65663714 + AT_rich Low_complexity Low_complexity 32 65 0 360 264 64 8 chr3 161860867 161860992 -65663586 - MER94 DNA DNA -2 132 1 2311 94 7 10 chr3 161861123 161861431 -65663147 + AluSg SINE Alu 1 307 -3 431 247 91 71 chr3 161861962 161862150 -65662428 - MER102b DNA MER1_type -1094 334 136 2289 102 0 0 chr3 161862150 161862444 -65662134 - AluSx SINE Alu -18 294 1 431 247 91 71 chr3 161862444 161862551 -65662027 - MER102b DNA MER1_type -1292 136 33 180 245 0 61 chr3 161862857 161862906 -65661672 + L2 LINE L2 3150 3195 -77 349 267 14 123 chr3 161863325 161863471 -65661107 + MER5A DNA MER1_type 60 189 0 185 275 14 72 chr3 161863471 161863521 -65661057 + L2 LINE L2 3268 3313 0 1353 111 0 0 chr3 161863546 161863727 -65660851 - AluSg/x SINE Alu 0 312 132 210 349 15 0 chr3 161863740 161863806 -65660772 + L2 LINE L2 3205 3271 -1 2396 96 3 0 chr3 161863856 161864168 -65660410 - AluSp SINE Alu 0 313 1 356 284 140 36 chr3 161864251 161864473 -65660105 + L2 LINE L2 2601 2845 -469 223 232 36 0 chr3 161864471 161864527 -65660051 - L2 LINE L2 -6 3266 3209 * 24 0 0 0 chr3 161864605 161864629 -65659949 + AT_rich Low_complexity Low_complexity 1 24 0 388 303 74 49 chr3 161864761 161864923 -65659655 + L2 LINE L2 3102 3267 -5 419 219 191 27 chr3 161866330 161866400 -65658178 - MER112 DNA MER1_type -18 242 185 2554 75 0 0 chr3 161866400 161866708 -65657870 + AluSc SINE Alu 1 308 -1 419 219 191 27 chr3 161866708 161866820 -65657758 - MER112 DNA MER1_type -75 185 30 1468 134 0 0 chr3 161867366 161867575 -65657003 + AluSg/x SINE Alu 87 295 -17 272 269 65 54 chr3 161874672 161874765 -65649813 - MIR SINE MIR -103 105 12 1736 114 70 4 chr3 161875906 161876177 -65648401 + AluSg SINE Alu 1 289 -21 183 362 17 0 chr3 161876273 161876331 -65648247 - L2 LINE L2 -98 3174 3116 845 201 44 18 chr3 161876647 161876876 -65647702 - L2 LINE L2 -546 2768 2534 1181 205 107 33 chr3 161876876 161877325 -65647253 - L1MC5 LINE L1 -28 7933 7452 548 250 16 48 chr3 161877404 161877592 -65646986 - L2 LINE L2 -761 2553 2372 561 274 158 63 chr3 161877859 161878303 -65646275 - L2 LINE L2 -232 3040 2584 972 219 87 69 chr3 161878314 161878661 -65645917 - MER57A LTR ERV1 -8 395 43 229 323 15 15 chr3 161878680 161878813 -65645765 - L2 LINE L2 -736 2578 2446 1410 180 12 4 chr3 161878893 161879149 -65645429 + MER47A DNA MER2_type 1 258 -108 1739 132 173 19 chr3 161880093 161880463 -65644115 - MSTA LTR MaLR 0 428 2 2399 64 0 7 chr3 161880480 161880778 -65643800 - AluY SINE Alu -15 296 1 2273 117 7 0 chr3 161881028 161881336 -65643242 + AluSg SINE Alu 1 310 0 900 246 128 69 chr3 161881603 161882269 -65642309 - L1ME4a LINE L1 -106 6015 5311 2382 96 3 0 chr3 161882827 161883130 -65641448 - AluSg SINE Alu -2 308 5 261 165 0 66 chr3 161883443 161883534 -65641044 + (CATATA)n Simple_repeat Simple_repeat 2 86 0 359 345 151 38 chr3 161883640 161884171 -65640407 - L2 LINE L2 -654 2660 2070 27 29 0 0 chr3 161885906 161885940 -65638638 + AT_rich Low_complexity Low_complexity 1 34 0 1889 132 46 0 chr3 161885956 161886237 -65638341 - AluSg SINE Alu -16 294 1 401 257 121 21 chr3 161886616 161886756 -65637822 + MIR3 SINE MIR 32 185 -23 545 213 318 25 chr3 161886852 161887091 -65637487 - MLT1H LTR MaLR 0 549 259 238 257 105 38 chr3 161887131 161887236 -65637342 - MLT1H LTR MaLR -460 133 22 2096 117 3 19 chr3 161887406 161887714 -65636864 - AluSx SINE Alu -9 303 1 766 172 0 8 chr3 161888139 161888267 -65636311 - FLAM_A SINE Alu -5 128 2 1567 186 20 30 chr3 161888349 161888650 -65635928 + AluJb SINE Alu 3 300 -12 280 321 44 44 chr3 161888698 161888835 -65635743 - MIR3 SINE MIR -16 192 56 379 267 213 10 chr3 161888861 161889063 -65635515 + MIR SINE MIR 20 262 0 238 306 32 16 chr3 161889194 161889318 -65635260 + CT-rich Low_complexity Low_complexity 3 128 0 214 231 19 0 chr3 161890044 161890096 -65634482 + (TA)n Simple_repeat Simple_repeat 2 54 0 22 0 0 0 chr3 161890874 161890896 -65633682 + AT_rich Low_complexity Low_complexity 1 22 0 406 81 16 0 chr3 161891136 161891198 -65633380 - L1MB7 LINE L1 -5 6179 6117 430 231 77 13 chr3 161891202 161891358 -65633220 + L1MC4 LINE L1 7873 8038 -4 25 0 0 0 chr3 161891397 161891422 -65633156 + AT_rich Low_complexity Low_complexity 1 25 0 290 203 58 29 chr3 161891422 161891491 -65633087 - L1MB7 LINE L1 -58 6126 6056 21 57 0 0 chr3 161892430 161892465 -65632113 + AT_rich Low_complexity Low_complexity 1 35 0 303 250 0 12 chr3 161894207 161894287 -65630291 + L1MCa LINE L1 1990 2068 -4358 238 211 22 30 chr3 161894289 161894389 -65630189 - L1MEd LINE L1 -1339 6686 1705 554 301 54 20 chr3 161894900 161895103 -65629475 - MIR SINE MIR -44 218 9 203 226 157 78 chr3 161896192 161896307 -65628271 + MIR SINE MIR 59 144 -64 584 281 45 56 chr3 161896627 161896894 -65627684 + L2 LINE L2 1823 2086 -1228 725 179 26 0 chr3 161897080 161897197 -65627381 + FLAM_C SINE Alu 1 120 -23 852 199 0 0 chr3 161897825 161897976 -65626602 + Tigger1 DNA MER2_type 1 151 -2267 * 988 148 74 20 chr3 161897975 161898178 -65626400 + Tigger1 DNA MER2_type 2205 2418 0 2649 135 24 12 chr3 161898324 161898745 -65625833 - MSTB LTR MaLR 0 426 1 2705 82 6 0 chr3 161898924 161899277 -65625301 - THE1A LTR MaLR 0 355 1 1576 94 71 0 chr3 161899583 161899807 -65624771 - AluSp SINE Alu -9 304 65 351 250 145 52 chr3 161899907 161900310 -65624268 - L1MEd LINE L1 -4886 1233 810 2325 98 0 0 chr3 161900310 161900605 -65623973 + AluSx SINE Alu 1 295 -17 351 250 145 52 chr3 161900605 161900659 -65623919 - L1MEd LINE L1 -5309 810 762 290 300 0 12 chr3 161900811 161900891 -65623687 - MLT1J LTR MaLR -331 180 102 279 0 0 0 chr3 161900924 161900955 -65623623 + (CA)n Simple_repeat Simple_repeat 2 32 0 367 250 45 45 chr3 161902749 161902881 -65621697 + L2 LINE L2 3171 3302 -11 454 353 124 10 chr3 161903857 161904163 -65620415 + L2 LINE L2 156 496 -2818 956 208 61 103 chr3 161904265 161904674 -65619904 - L1MC4 LINE L1 -143 7899 7508 332 214 22 179 chr3 161904751 161904980 -65619598 - L1MC4a LINE L1 -1506 6302 6110 394 182 92 1 chr3 161905087 161905188 -65619390 - L1ME2 LINE L1 -252 5912 5814 347 213 106 0 chr3 161905217 161905311 -65619267 - MIR SINE MIR -99 163 60 1648 190 192 10 chr3 161905340 161905735 -65618843 - L1MD2 LINE L1 -21 6338 5872 * 6192 159 38 55 chr3 161905722 161906688 -65617890 - L1MDa LINE L1 -3863 2677 1696 2144 145 0 0 chr3 161906688 161906998 -65617580 - AluSx SINE Alu -2 310 1 6192 159 38 55 chr3 161906998 161907518 -65617060 - L1MDa LINE L1 -4844 1696 1214 2947 112 33 11 chr3 161907518 161907974 -65616604 + L1PA13 LINE L1 5696 6161 -2 6192 159 38 55 chr3 161907974 161908060 -65616518 - L1MDa LINE L1 -5326 1214 1128 1379 137 60 17 chr3 161908060 161908284 -65616294 - MSTB LTR MaLR 0 426 190 2064 102 60 0 chr3 161908284 161908568 -65616010 - AluSg SINE Alu -9 301 1 11019 141 29 7 chr3 161908576 161911284 -65613294 - L1MA3 LINE L1 -168 6137 3370 467 302 273 42 chr3 161911552 161912264 -65612314 + L2 LINE L2 906 1781 -1533 393 58 0 0 chr3 161912285 161912337 -65612241 + (TG)n Simple_repeat Simple_repeat 2 53 0 939 206 50 0 chr3 161912352 161912551 -65612027 + MER3 DNA MER1_type 1 209 0 1732 213 340 16 chr3 161912551 161913325 -65611253 + L1MD3 LINE L1 6764 7788 -207 281 244 168 0 chr3 161913344 161913463 -65611115 + L1MD3 LINE L1 7856 7994 -1 215 291 291 0 chr3 161913481 161913567 -65611011 + L2 LINE L2 2247 2357 -957 895 62 0 0 chr3 161913572 161913684 -65610894 + AluY SINE Alu 175 286 -25 2143 247 90 16 chr3 161913754 161914435 -65610143 - L1MEc LINE L1 -5385 1011 281 327 172 17 0 chr3 161914500 161914558 -65610020 - L1MEc LINE L1 -6301 95 37 980 179 73 37 chr3 161916204 161916422 -65608156 - MER46A DNA MER2_type -10 226 1 189 308 15 15 chr3 161917561 161917626 -65606952 + MIR SINE MIR 196 260 -2 2226 79 13 16 chr3 161917802 161918106 -65606472 + AluSp SINE Alu 1 303 -10 421 256 75 0 chr3 161918114 161918247 -65606331 + L1MD1 LINE L1 6100 6242 0 182 396 57 6 chr3 161920214 161920373 -65604205 - L2 LINE L2 -299 2973 2807 400 279 36 42 chr3 161921055 161921220 -65603358 + MIR SINE MIR 66 229 -33 28 29 0 0 chr3 161921808 161921843 -65602735 + AT_rich Low_complexity Low_complexity 1 35 0 1980 129 0 0 chr3 161924930 161925217 -65599361 - AluSg SINE Alu -23 287 1 829 259 86 17 chr3 161925801 161926033 -65598545 - MIR SINE MIR -10 252 5 2249 96 3 0 chr3 161927230 161927531 -65597047 - AluSx SINE Alu -10 302 1 2200 126 31 14 chr3 161927665 161928023 -65596555 + THE1B LTR MaLR 1 364 0 1221 187 178 56 chr3 161928391 161928852 -65595726 + L1MC5 LINE L1 7124 7640 -321 233 200 53 84 chr3 161928862 161928957 -65595621 + L1MC5 LINE L1 7735 7826 -135 2209 85 3 0 chr3 161929380 161929683 -65594895 + AluSx SINE Alu 1 304 0 22 80 0 0 chr3 161929766 161929816 -65594762 + AT_rich Low_complexity Low_complexity 1 50 0 23 33 0 0 chr3 161930609 161930639 -65593939 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 161931115 161931136 -65593442 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 161931496 161931524 -65593054 + AT_rich Low_complexity Low_complexity 1 28 0 1859 169 22 3 chr3 161931875 161932230 -65592348 - L1PA16 LINE L1 0 6166 5805 284 236 79 0 chr3 161932230 161932319 -65592259 + L1MC5 LINE L1 7814 7909 -52 2051 103 7 33 chr3 161932464 161932764 -65591814 - AluSx SINE Alu -18 294 3 315 161 0 0 chr3 161934276 161934332 -65590246 + (TA)n Simple_repeat Simple_repeat 2 57 0 2088 139 0 0 chr3 161934336 161934638 -65589940 - AluSx SINE Alu -10 302 1 22 0 0 0 chr3 161935992 161936014 -65588564 + AT_rich Low_complexity Low_complexity 1 22 0 2267 64 0 3 chr3 161936408 161936736 -65587842 - AluY SINE Alu 0 327 1 498 264 102 49 chr3 161937620 161937866 -65586712 - MIR SINE MIR -1 261 3 1986 91 61 10 chr3 161937944 161938241 -65586337 - AluSp SINE Alu -1 312 1 23 0 0 0 chr3 161939303 161939326 -65585252 + AT_rich Low_complexity Low_complexity 1 23 0 639 247 103 6 chr3 161940212 161940386 -65584192 - MIR SINE MIR 0 262 72 291 356 106 0 chr3 161940488 161940592 -65583986 - L2 LINE L2 -13 3259 3145 421 147 37 18 chr3 161940969 161941072 -65583506 - L1M1 LINE L1 -411 5755 5654 362 306 40 0 chr3 161941403 161941527 -65583051 + L1ME2 LINE L1 6036 6164 0 2124 134 0 0 chr3 161941951 161942250 -65582328 + AluSx SINE Alu 14 312 0 288 0 0 0 chr3 161942250 161942282 -65582296 + (TA)n Simple_repeat Simple_repeat 2 33 0 243 61 0 0 chr3 161942716 161942749 -65581829 + (CA)n Simple_repeat Simple_repeat 2 34 0 834 180 47 47 chr3 161942808 161942980 -65581598 + FAM SINE Alu 1 172 -3 22 0 0 0 chr3 161943401 161943423 -65581155 + AT_rich Low_complexity Low_complexity 1 22 0 1076 194 33 0 chr3 161943593 161943804 -65580774 - MER20 DNA MER1_type -1 218 1 508 254 22 37 chr3 161945080 161945214 -65579364 + MER94 DNA DNA 2 133 -1 33 0 0 23 chr3 161945285 161945306 -65579272 + AT_rich Low_complexity Low_complexity 1 21 -22 2284 97 0 3 chr3 161945306 161945606 -65578972 + AluSq SINE Alu 1 299 -14 33 0 0 23 chr3 161945606 161945628 -65578950 + AT_rich Low_complexity Low_complexity 21 43 0 182 36 0 36 chr3 161946180 161946208 -65578370 + (GAAAA)n Simple_repeat Simple_repeat 2 28 0 2353 100 0 0 chr3 161946215 161946524 -65578054 + AluSg SINE Alu 1 309 -1 592 219 35 101 chr3 161946792 161946947 -65577631 - MER58C DNA MER1_type -2206 214 77 1108 137 27 129 chr3 161946947 161947210 -65577368 - MER46A DNA MER2_type 0 236 1 592 219 35 101 chr3 161947210 161947282 -65577296 - MER58C DNA MER1_type -2343 77 2 1217 218 43 21 chr3 161947294 161947620 -65576958 - MER46C DNA MER2_type -1 337 5 1916 141 0 3 chr3 161947681 161947964 -65576614 + AluSx SINE Alu 1 282 -30 216 0 0 0 chr3 161947967 161947991 -65576587 + (TAAA)n Simple_repeat Simple_repeat 4 27 0 25 0 0 0 chr3 161948605 161948630 -65575948 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr3 161948686 161948708 -65575870 + AT_rich Low_complexity Low_complexity 1 22 0 2241 112 0 7 chr3 161949594 161949898 -65574680 + AluSx SINE Alu 1 302 -10 2274 96 3 0 chr3 161951000 161951303 -65573275 - AluSg SINE Alu -6 304 1 266 373 57 40 chr3 161952938 161953166 -65571412 + L2 LINE L2 2953 3184 -88 1538 280 55 33 chr3 161953598 161954443 -65570135 - L2 LINE L2 0 3313 2438 358 302 119 30 chr3 161954588 161954729 -65569849 + L1ME LINE L1 12 139 -5931 2172 106 3 0 chr3 161954729 161955013 -65569565 - AluSp SINE Alu -28 285 1 358 302 119 30 chr3 161955013 161955166 -65569412 + L1ME LINE L1 139 332 -5738 2657 300 93 35 chr3 161955506 161957092 -65567486 + L1ME LINE L1 430 2268 -3993 1773 242 71 43 chr3 161957110 161957295 -65567283 + L1ME LINE L1 2273 2451 -3629 1595 166 57 3 chr3 161957295 161957591 -65566987 - AluJo SINE Alu 0 312 1 1773 242 71 43 chr3 161957591 161958057 -65566521 + L1ME LINE L1 2451 2942 -3138 2454 178 61 18 chr3 161958073 161958789 -65565789 + L1MB8 LINE L1 5055 5814 -364 968 102 0 0 chr3 161958791 161958918 -65565660 + AluJb SINE Alu 1 127 -185 1248 206 36 55 chr3 161958926 161959310 -65565268 + L1MB8 LINE L1 5797 6173 -5 804 245 115 5 chr3 161959313 161959713 -65564865 + L1ME LINE L1 2960 3403 -2677 1280 239 256 61 chr3 161959734 161960475 -65564103 + L1ME LINE L1 3438 4374 -1706 2193 95 0 10 chr3 161960475 161960770 -65563808 + AluSx SINE Alu 1 292 -20 1280 239 256 61 chr3 161960770 161960894 -65563684 + L1ME LINE L1 4374 4472 -1608 1307 218 116 34 chr3 161962384 161962818 -65561760 + L1ME LINE L1 4478 4964 -1116 1784 145 3 47 chr3 161962818 161963135 -65561443 + AluSx SINE Alu 1 303 -9 1307 218 116 34 chr3 161963135 161963227 -65561351 + L1ME LINE L1 4964 5047 -1033 969 252 153 10 chr3 161963244 161963884 -65560694 - L1M4 LINE L1 -4753 1891 1040 1921 162 21 15 chr3 161963890 161964224 -65560354 - MER1B DNA MER1_type 0 337 2 249 279 146 19 chr3 161964379 161964537 -65560041 - L1M4 LINE L1 -5661 881 704 2236 122 0 0 chr3 161964961 161965265 -65559313 + AluSq SINE Alu 1 304 -9 3054 145 40 5 chr3 161965265 161965813 -65558765 - L1MB7 LINE L1 -21 6163 5597 463 292 115 53 chr3 161966296 161966428 -65558150 - HAL1 LINE L1 -741 1766 1644 1289 39 0 0 chr3 161966428 161966583 -65557995 + L1PA5 LINE L1 5992 6146 -8 463 292 115 53 chr3 161966583 161966594 -65557984 - HAL1 LINE L1 -863 1644 1635 189 0 0 0 chr3 161966594 161966615 -65557963 + (TAAA)n Simple_repeat Simple_repeat 1 21 0 463 292 115 53 chr3 161966615 161966922 -65557656 - HAL1 LINE L1 -872 1635 1287 568 272 168 24 chr3 161968027 161968277 -65556301 + L2 LINE L2 3023 3308 -5 1478 166 53 7 chr3 161970403 161970705 -65553873 + L1MB7 LINE L1 5772 6087 -97 26 50 0 0 chr3 161971046 161971086 -65553492 + AT_rich Low_complexity Low_complexity 1 40 0 788 89 17 22 chr3 161971989 161972169 -65552409 + (TA)n Simple_repeat Simple_repeat 2 180 0 1698 186 3 3 chr3 161972173 161972463 -65552115 - AluJo SINE Alu -22 290 1 182 226 16 65 chr3 161972686 161972748 -65551830 - MIR SINE MIR -3 259 201 599 291 111 19 chr3 161972755 161973016 -65551562 - MLT1L LTR MaLR -9 606 322 401 181 43 78 chr3 161973066 161973182 -65551396 - MLT1L LTR MaLR -503 112 1 487 238 70 35 chr3 161973188 161973352 -65551226 - MIR SINE MIR -62 146 21 23 0 0 0 chr3 161973364 161973387 -65551191 + AT_rich Low_complexity Low_complexity 1 23 0 650 273 49 45 chr3 161973569 161973833 -65550745 + L2 LINE L2 3048 3312 -1 22 35 0 0 chr3 161974113 161974142 -65550436 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 161976916 161976939 -65547639 + AT_rich Low_complexity Low_complexity 1 23 0 1603 192 7 3 chr3 161977206 161977514 -65547064 - AluSc SINE Alu 0 309 1 184 310 17 0 chr3 161977538 161977596 -65546982 - L2 LINE L2 -1 3271 3213 2219 98 3 0 chr3 161978900 161979207 -65545371 - AluSx SINE Alu -4 308 1 898 247 195 33 chr3 161979495 161980166 -65544412 - L2 LINE L2 -70 3243 2376 1956 141 0 10 chr3 161980947 161981252 -65543326 + AluSx SINE Alu 1 302 -10 1014 184 24 57 chr3 161982498 161982563 -65542015 + MER20 DNA MER1_type 1 67 -152 1824 122 7 33 chr3 161982563 161982867 -65541711 - AluSx SINE Alu -16 296 1 1014 184 24 57 chr3 161982867 161983013 -65541565 + MER20 DNA MER1_type 67 205 -14 374 272 103 43 chr3 161983058 161983242 -65541336 + MIR SINE MIR 68 262 0 1915 138 0 28 chr3 161983845 161984055 -65540523 - AluSx SINE Alu -2 310 111 4215 151 99 7 chr3 161984055 161984809 -65539769 + LTR1B LTR ERV1 1 824 -2 1915 138 0 28 chr3 161984809 161984917 -65539661 - AluSx SINE Alu -201 111 1 592 117 11 0 chr3 161985102 161985196 -65539382 + MER53 DNA DNA 1 95 -94 537 138 0 0 chr3 161985119 161985206 -65539372 - MER53 DNA DNA -8 181 95 * 2106 113 0 3 chr3 161985948 161986250 -65538328 + AluSx SINE Alu 1 301 -11 255 61 0 0 chr3 161986252 161986285 -65538293 + (GGGGA)n Simple_repeat Simple_repeat 4 36 0 187 355 189 0 chr3 161986285 161986454 -65538124 - L3b LINE CR1 -276 1307 1107 596 285 4 4 chr3 161986739 161987006 -65537572 + AluSq SINE Alu 40 306 -7 291 114 0 0 chr3 161987010 161987054 -65537524 + (GGGAA)n Simple_repeat Simple_repeat 5 48 0 678 181 47 67 chr3 161988678 161988755 -65535823 + MER5A DNA MER1_type 1 78 -111 2121 105 7 16 chr3 161988755 161989061 -65535517 + AluSc SINE Alu 1 303 -6 678 181 47 67 chr3 161989061 161989176 -65535402 + MER5A DNA MER1_type 78 189 0 2232 92 13 0 chr3 161990157 161990462 -65534116 + AluSg SINE Alu 1 309 -1 654 244 72 44 chr3 161990463 161990713 -65533865 + L1ME2 LINE L1 5815 6071 -93 4239 83 265 0 chr3 161990752 161991405 -65533173 + LTR12 LTR ERV1 1 826 0 4529 117 10 48 chr3 161991405 161992121 -65532457 - LTR8 LTR ERV1 -2 689 1 2461 103 44 89 chr3 161992214 161992710 -65531868 - LTR21A LTR ERV1 -19 486 13 239 128 77 0 chr3 161992714 161992753 -65531825 - LTR21A LTR ERV1 -463 42 1 1104 237 51 59 chr3 161992768 161993083 -65531495 + MER39 LTR ERV1 302 615 -92 2272 92 0 3 chr3 161993083 161993388 -65531190 + AluSq SINE Alu 3 306 -7 1104 237 51 59 chr3 161993388 161993481 -65531097 + MER39 LTR ERV1 615 707 0 294 185 80 4 chr3 161993486 161993576 -65531002 + L1MA10 LINE L1 6074 6333 0 587 243 141 0 chr3 161993779 161993964 -65530614 - MIR SINE MIR -5 257 47 315 224 47 28 chr3 161993980 161994087 -65530491 + L1ME4a LINE L1 5989 6097 -24 2199 93 7 0 chr3 161994088 161994388 -65530190 - AluSq SINE Alu -11 302 1 264 282 91 18 chr3 161994551 161994661 -65529917 - MIR SINE MIR -128 134 17 1133 261 58 84 chr3 161996274 161996961 -65527617 + L1MC4a LINE L1 5258 5926 -1882 752 281 74 56 chr3 161997185 161997261 -65527317 + L1MEd LINE L1 17 90 -6029 1920 122 48 0 chr3 161997261 161997555 -65527023 - AluSx SINE Alu -4 308 1 752 281 74 56 chr3 161997555 161997923 -65526655 + L1MEd LINE L1 90 469 -5650 865 248 103 62 chr3 161997929 161998032 -65526546 + L1M4 LINE L1 3621 3718 -2428 2480 60 0 0 chr3 161998032 161998334 -65526244 - AluSx SINE Alu -10 302 1 865 248 103 62 chr3 161998334 161998639 -65525939 + L1M4 LINE L1 3718 4060 -2086 1694 171 14 0 chr3 161998639 161998926 -65525652 + AluJb SINE Alu 18 308 -4 865 248 103 62 chr3 161998926 161999068 -65525510 + L1M4 LINE L1 4060 4195 -1951 2160 101 0 0 chr3 161999290 161999587 -65524991 + AluSq SINE Alu 1 297 -16 433 81 0 0 chr3 161999692 161999754 -65524824 + Alu SINE Alu 245 306 -6 2017 125 10 0 chr3 162000431 162000736 -65523842 + AluSq SINE Alu 1 308 -5 317 238 56 16 chr3 162001035 162001185 -65523393 - MLT1L LTR MaLR -426 189 1 618 162 0 0 chr3 162001281 162001380 -65523198 + FLAM_A SINE Alu 43 141 -1 1730 138 42 3 chr3 162001930 162002213 -65522365 - AluSx SINE Alu -18 294 1 304 299 30 37 chr3 162003054 162003188 -65521390 + L2 LINE L2 2992 3124 -148 1894 134 0 0 chr3 162003303 162003579 -65520999 + AluSx SINE Alu 22 297 -15 1959 110 16 19 chr3 162003802 162004112 -65520466 - AluSx SINE Alu -3 309 1 1051 249 80 74 chr3 162004160 162004496 -65520082 - L1ME LINE L1 -630 5534 5201 1929 141 10 0 chr3 162004496 162004793 -65519785 - AluSx SINE Alu -12 300 1 1051 249 80 74 chr3 162004793 162004898 -65519680 - L1ME LINE L1 -963 5201 5098 2102 105 3 7 chr3 162004898 162005194 -65519384 - AluSx SINE Alu -17 295 1 1051 249 80 74 chr3 162005194 162005699 -65518879 - L1ME LINE L1 -1066 5098 4580 1942 118 0 53 chr3 162005710 162006032 -65518546 - AluSx SINE Alu -6 306 2 1133 276 77 32 chr3 162006090 162006450 -65518128 + MLT1J2 LTR MaLR 1 385 -65 2159 118 0 0 chr3 162006450 162006755 -65517823 + AluSx SINE Alu 1 305 -7 1133 276 77 32 chr3 162006755 162006825 -65517753 + MLT1J2 LTR MaLR 385 450 0 517 295 66 42 chr3 162006828 162007069 -65517509 - L1ME LINE L1 -1665 4481 4235 488 195 0 0 chr3 162007195 162007282 -65517296 - AluJ/FLAM SINE Alu -224 88 2 2116 104 0 3 chr3 162007326 162007625 -65516953 + AluSq SINE Alu 16 313 0 453 156 13 0 chr3 162007771 162007848 -65516730 - LTR33A LTR ERVL 0 523 446 2232 119 0 0 chr3 162007850 162008162 -65516416 - AluSx SINE Alu 0 312 1 410 230 43 68 chr3 162008516 162008677 -65515901 - LTR33A LTR ERVL -364 159 3 2379 128 7 91 chr3 162009267 162009719 -65514859 - MLT2D LTR ERVL 0 414 1 2206 82 3 35 chr3 162010663 162010982 -65513596 + AluSc SINE Alu 1 309 0 1404 99 0 28 chr3 162012064 162012275 -65512303 + AluSg/x SINE Alu 106 310 -2 2037 176 43 15 chr3 162013241 162013638 -65510940 - MLT2D LTR ERVL -6 408 1 714 206 89 50 chr3 162013862 162013992 -65510586 - MER5A DNA MER1_type 0 189 49 925 281 122 6 chr3 162013992 162014312 -65510266 + LTR18A LTR ERVL 1 357 0 714 206 89 50 chr3 162014312 162014361 -65510217 - MER5A DNA MER1_type -140 49 3 424 297 161 0 chr3 162014380 162014535 -65510043 + MER5A DNA MER1_type 10 189 0 484 209 115 27 chr3 162014645 162014793 -65509785 - MER5B DNA MER1_type -17 161 1 525 301 97 25 chr3 162015567 162015886 -65508692 - MER90 LTR ERV1 -52 562 221 2155 93 3 37 chr3 162016042 162016365 -65508213 - AluSx SINE Alu 0 312 1 1639 180 0 25 chr3 162016599 162016915 -65507663 + AluJo SINE Alu 1 308 -4 602 308 43 53 chr3 162016917 162017313 -65507265 - MLT1J LTR MaLR -99 412 21 1945 203 174 10 chr3 162017373 162017860 -65506718 - MLT1F1 LTR MaLR 0 567 1 260 253 12 36 chr3 162017899 162017982 -65506596 + CT-rich Low_complexity Low_complexity 1 81 0 2798 199 15 46 chr3 162018512 162019164 -65505414 + LTR27 LTR ERV1 3 634 -2 1951 246 40 28 chr3 162019240 162019735 -65504843 + MLT1J LTR MaLR 2 502 -9 1244 225 62 60 chr3 162020367 162020577 -65504001 - MLT1D LTR MaLR -69 436 228 670 42 11 11 chr3 162020577 162020672 -65503906 + (TC)n Simple_repeat Simple_repeat 2 96 0 1244 225 62 60 chr3 162020672 162020896 -65503682 - MLT1D LTR MaLR -277 228 1 1716 85 9 0 chr3 162020943 162021167 -65503411 - AluSq SINE Alu -68 245 20 364 226 91 11 chr3 162021267 162021462 -65503116 - L1M3c LINE L1 -4590 1881 1518 1561 184 0 38 chr3 162021485 162021800 -65502778 - AluJo SINE Alu -9 303 1 417 315 7 27 chr3 162021809 162021958 -65502620 - L1MEd LINE L1 -5028 1091 946 1739 168 0 0 chr3 162021962 162022242 -65502336 + AluSx SINE Alu 5 307 0 208 0 0 0 chr3 162022242 162022265 -65502313 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 240 184 0 0 chr3 162022695 162022744 -65501834 + (TATG)n Simple_repeat Simple_repeat 4 52 0 1709 109 0 53 chr3 162022865 162022955 -65501623 + AluSx SINE Alu 46 139 -173 2067 134 0 0 chr3 162022955 162023262 -65501316 + AluSx SINE Alu 1 307 -5 1709 109 0 53 chr3 162023262 162023436 -65501142 + AluSx SINE Alu 139 296 -16 245 188 0 0 chr3 162023436 162023484 -65501094 + L1MDa LINE L1 1874 1921 -4619 262 239 31 0 chr3 162023517 162023613 -65500965 + L1ME2 LINE L1 5844 5944 -226 22 0 0 0 chr3 162023658 162023680 -65500898 + AT_rich Low_complexity Low_complexity 1 22 0 781 104 0 0 chr3 162024168 162024274 -65500304 + AluSq/x SINE Alu 2 107 -205 1299 55 95 10 chr3 162024389 162024589 -65499989 + L1PA5 LINE L1 5938 6154 0 2293 263 37 13 chr3 162024589 162025869 -65498709 + L1ME3A LINE L1 4636 5950 -220 535 309 71 40 chr3 162025981 162026376 -65498202 - L1MEd LINE L1 -5269 850 444 303 300 81 90 chr3 162026438 162026748 -65497830 - L1MEd LINE L1 -5733 386 80 962 246 0 12 chr3 162026749 162026993 -65497585 + L1MB3 LINE L1 5032 5272 -874 1071 132 58 0 chr3 162027036 162027210 -65497368 + AluJb SINE Alu 75 258 -54 1400 132 125 59 chr3 162027362 162027634 -65496944 - AluSx SINE Alu -22 290 1 5079 140 19 16 chr3 162027634 162028508 -65496070 + L1MB3 LINE L1 5306 6182 -1 2234 100 0 0 chr3 162028518 162028819 -65495759 + AluSc SINE Alu 1 301 -8 261 257 14 40 chr3 162030138 162030212 -65494366 - L2 LINE L2 0 3313 3242 834 224 6 28 chr3 162030412 162030591 -65493987 + AluJb SINE Alu 137 311 -1 478 107 12 12 chr3 162030591 162030675 -65493903 + (GGAA)n Simple_repeat Simple_repeat 1 84 0 449 330 158 5 chr3 162030774 162030995 -65493583 - MIR SINE MIR -6 256 2 820 204 6 27 chr3 162031708 162032040 -65492538 + CT-rich Low_complexity Low_complexity 1 325 0 1688 147 22 0 chr3 162032040 162032313 -65492265 - AluJo SINE Alu -33 279 1 2869 168 90 54 chr3 162033492 162034159 -65490419 + LTR8 LTR ERV1 1 691 0 528 296 14 21 chr3 162034830 162034972 -65489606 + MIR SINE MIR 3 143 -119 414 256 0 0 chr3 162034979 162035061 -65489517 + L2 LINE L2 2685 2766 -548 576 256 109 14 chr3 162035061 162035272 -65489306 - L1M4 LINE L1 -3546 2600 2370 629 286 68 0 chr3 162035284 162035445 -65489133 + MER119 DNA MER1_type 1 172 -411 190 216 39 39 chr3 162035558 162035609 -65488969 - MIR3 SINE MIR -7 201 151 364 176 0 0 chr3 162035799 162035850 -65488728 - AluJb SINE Alu -53 249 199 186 176 29 0 chr3 162035874 162035908 -65488670 - MIR SINE MIR -141 67 33 1441 81 0 5 chr3 162035971 162036168 -65488410 + AluSg/x SINE Alu 108 303 -9 736 191 61 7 chr3 162036196 162036343 -65488235 + MLT1B LTR MaLR 236 390 0 215 210 16 65 chr3 162036566 162036628 -65487950 - L2 LINE L2 0 3313 3255 24 32 0 0 chr3 162037083 162037114 -65487464 + GC_rich Low_complexity Low_complexity 1 31 0 398 171 73 0 chr3 162037715 162037797 -65486781 - MLT2B3 LTR ERVL -466 88 1 * 817 226 67 67 chr3 162037797 162038079 -65486499 + MER54A LTR ERVL 523 804 -97 756 300 41 0 chr3 162038079 162038346 -65486232 + L1MEc LINE L1 1517 1794 -4602 42214 62 3 4 chr3 162038365 162040205 -65484373 + L1PA5 LINE L1 4 1845 -4309 2235 55 0 0 chr3 162040205 162040478 -65484100 - L1PA5 LINE L1 0 6154 5882 42214 62 3 4 chr3 162040478 162044638 -65479940 + L1PA5 LINE L1 1845 5997 -157 1242 103 0 0 chr3 162044946 162045111 -65479467 + AluSx SINE Alu 1 165 -147 180 111 0 0 chr3 162045140 162045167 -65479411 + (A)n Simple_repeat Simple_repeat 1 27 0 2580 126 31 49 chr3 162045186 162045639 -65478939 + MER65A LTR ERV1 1 445 0 2261 75 0 3 chr3 162046107 162046402 -65478176 - AluY SINE Alu -17 294 1 2315 183 86 0 chr3 162046735 162047200 -65477378 + MLT1D LTR MaLR 1 505 0 445 272 76 76 chr3 162047221 162047695 -65476883 - MLT1K LTR MaLR -1 475 2 1611 196 141 65 chr3 162047893 162048147 -65476431 + Charlie2 DNA MER1_type 2075 2309 -553 1735 158 10 13 chr3 162048147 162048445 -65476133 - AluSx SINE Alu -15 297 1 1611 196 141 65 chr3 162048445 162048530 -65476048 + Charlie2 DNA MER1_type 2309 2386 -476 2386 73 0 0 chr3 162048530 162048831 -65475747 - AluY SINE Alu -10 301 1 1611 196 141 65 chr3 162048831 162049115 -65475463 + Charlie2 DNA MER1_type 2386 2764 -98 2217 93 3 3 chr3 162049115 162049415 -65475163 + AluSp SINE Alu 3 302 -11 1611 196 141 65 chr3 162049415 162049522 -65475056 + Charlie2 DNA MER1_type 2764 2862 0 1867 153 3 7 chr3 162049726 162050034 -65474544 - AluSx SINE Alu -5 307 1 459 230 162 31 chr3 162050132 162050323 -65474255 - L2 LINE L2 -650 2664 2449 2108 115 3 3 chr3 162050539 162050844 -65473734 + AluSx SINE Alu 1 305 -7 250 269 10 39 chr3 162051609 162051713 -65472865 + MIR3 SINE MIR 102 202 -6 2112 110 0 19 chr3 162052045 162052354 -65472224 + AluSq SINE Alu 1 303 -10 731 274 44 13 chr3 162052692 162052917 -65471661 - MLT1A1 LTR MaLR 0 365 134 441 86 0 0 chr3 162052917 162052975 -65471603 - MER4A LTR ERV1 0 664 607 1007 124 75 0 chr3 162052976 162053137 -65471441 - LTR7 LTR ERV1 -137 313 141 2462 93 3 0 chr3 162053137 162053469 -65471109 - HERVH LTR ERV1 -208 7505 7173 1296 113 0 0 chr3 162053528 162053713 -65470865 - HERVH LTR ERV1 -770 6943 6759 * 2261 157 14 13 chr3 162053698 162054226 -65470352 - HERVH LTR ERV1 -1952 4702 3873 1146 153 15 0 chr3 162054226 162054422 -65470156 - HERVH LTR ERV1 -4375 3338 3140 * 14777 124 14 19 chr3 162054401 162057085 -65467493 - HERVH LTR ERV1 -4718 2995 11 1004 95 7 7 chr3 162057090 162057237 -65467341 - LTR7 LTR ERV1 0 450 304 2029 128 161 14 chr3 162057277 162057644 -65466934 - LTR21A LTR ERV1 -84 421 1 7896 155 15 6 chr3 162057644 162059005 -65465573 - HERVFH21 LTR ERV1 0 7979 5288 300 363 10 5 chr3 162059405 162059598 -65464980 - HERVFH21 LTR ERV1 -1838 5875 5682 395 348 21 0 chr3 162059612 162059753 -65464825 - HERVFH21 LTR ERV1 -525 6893 6750 8505 121 21 2 chr3 162059757 162061304 -65463274 - HERVFH21 LTR ERV1 -1812 4717 3074 5173 98 22 4 chr3 162061301 162062026 -65462552 - HERVFH21 LTR ERV1 -4238 2291 1554 * 3154 157 38 15 chr3 162062023 162063197 -65461381 - HERVFH21 LTR ERV1 -5063 1591 161 * 1943 132 180 6 chr3 162063298 162063653 -65460925 - LTR21A LTR ERV1 -88 417 1 8762 155 10 7 chr3 162063653 162064753 -65459825 + L1PB1 LINE L1 3621 4716 -1435 2121 113 3 0 chr3 162064753 162065054 -65459524 - AluSx SINE Alu -10 302 1 8762 155 10 7 chr3 162065054 162066286 -65458292 + L1PB1 LINE L1 4716 5965 -186 2348 89 0 0 chr3 162066286 162066590 -65457988 + AluSp SINE Alu 1 304 -9 8762 155 10 7 chr3 162066590 162066778 -65457800 + L1PB1 LINE L1 5965 6151 0 997 156 33 6 chr3 162067592 162067772 -65456806 - MER5A DNA MER1_type -4 185 1 313 316 83 29 chr3 162069086 162069464 -65455114 - L2 LINE L2 -263 3009 2619 1670 177 17 0 chr3 162069925 162070224 -65454354 - AluJb SINE Alu -8 304 1 357 260 60 20 chr3 162071021 162071121 -65453457 - MIR SINE MIR -79 183 80 180 291 13 76 chr3 162071925 162072004 -65452574 + L3b LINE CR1 1436 1509 -74 329 207 0 0 chr3 162072089 162072147 -65452431 - L2 LINE L2 0 3313 3256 2083 117 13 0 chr3 162072329 162072628 -65451950 - AluSx SINE Alu -9 303 1 564 209 16 31 chr3 162072867 162072996 -65451582 + L2 LINE L2 3187 3313 0 1647 124 4 0 chr3 162074793 162075035 -65449543 - AluSx SINE Alu -14 298 56 390 238 0 0 chr3 162075063 162075143 -65449435 - L1 LINE L1 -2445 3701 3622 1902 128 17 7 chr3 162075279 162075568 -65449010 + AluSx SINE Alu 3 294 -18 552 100 0 0 chr3 162075568 162075648 -65448930 + (GGGGA)n Simple_repeat Simple_repeat 1 80 0 2311 212 40 95 chr3 162075770 162075865 -65448713 - L1MEc LINE L1 -2369 3846 3747 1549 154 4 4 chr3 162075865 162076125 -65448453 - AluSx SINE Alu -7 305 46 2311 212 40 95 chr3 162076125 162076362 -65448216 - L1MEc LINE L1 -2468 3747 3498 896 92 0 0 chr3 162076362 162076481 -65448097 - AluSc SINE Alu -11 298 180 2311 212 40 95 chr3 162076481 162077201 -65447377 - L1MEc LINE L1 -2717 3498 2850 679 108 0 20 chr3 162077202 162077304 -65447274 - AluSg/x SINE Alu -63 246 147 728 192 0 0 chr3 162077304 162077424 -65447154 + FLAM_A SINE Alu 12 131 -11 3853 222 68 26 chr3 162077438 162078655 -65445923 - L1MEc LINE L1 -3400 2815 1651 2107 119 0 0 chr3 162078655 162078949 -65445629 - AluSq SINE Alu -18 295 2 3853 222 68 26 chr3 162078949 162079066 -65445512 - L1MEc LINE L1 -4564 1651 1540 1742 169 7 16 chr3 162079066 162079374 -65445204 - AluSx SINE Alu -3 309 5 3853 222 68 26 chr3 162079374 162079814 -65444764 - L1MEc LINE L1 -4675 1540 1018 425 277 18 18 chr3 162079814 162079980 -65444598 - AluSg/x SINE Alu -6 304 139 553 211 45 8 chr3 162080282 162080415 -65444163 + L1ME3 LINE L1 6019 6156 -6 43327 30 28 4 chr3 162080896 162086901 -65437677 - L1PA2 LINE L1 0 6155 1 1591 256 175 3 chr3 162087358 162087976 -65436602 + L2 LINE L2 35 758 -2556 2873 242 199 10 chr3 162087981 162089192 -65435386 + L2 LINE L2 1721 3145 -168 507 201 128 74 chr3 162089228 162089486 -65435092 + MLT1H LTR MaLR 111 410 -185 2430 63 0 0 chr3 162089911 162090210 -65434368 - AluY SINE Alu -12 299 1 1815 153 3 13 chr3 162091133 162091447 -65433131 - AluJo SINE Alu 0 312 2 1343 276 198 28 chr3 162091962 162092019 -65432559 + L2 LINE L2 1603 1649 -1665 2015 88 13 45 chr3 162092019 162092327 -65432251 - AluSx SINE Alu -14 298 1 1343 276 198 28 chr3 162092327 162093291 -65431287 + L2 LINE L2 1649 2797 -517 419 212 190 104 chr3 162093321 162093590 -65430988 + LTR33A LTR ERVL 3 294 -229 1777 96 52 0 chr3 162093656 162093930 -65430648 - AluSg SINE Alu 0 304 18 1408 154 42 3 chr3 162094307 162094593 -65429985 + L1PB4 LINE L1 5290 5586 -570 817 181 6 29 chr3 162094593 162094764 -65429814 + AluJb SINE Alu 138 304 -8 2470 143 18 35 chr3 162094780 162094945 -65429633 + L1PB4 LINE L1 5607 5773 -383 231 114 0 0 chr3 162094945 162094980 -65429598 + (TG)n Simple_repeat Simple_repeat 2 36 0 2470 143 18 35 chr3 162094980 162095270 -65429308 + L1PB4 LINE L1 5773 6054 -102 1052 173 0 46 chr3 162095243 162095440 -65429138 + L1PB4 LINE L1 5955 6142 -14 * 2121 109 0 3 chr3 162095440 162095733 -65428845 - AluSx SINE Alu -20 292 1 23 0 0 0 chr3 162095827 162095850 -65428728 + AT_rich Low_complexity Low_complexity 1 23 0 2073 114 7 0 chr3 162095850 162096140 -65428438 - AluSg SINE Alu -18 292 1 2150 111 0 22 chr3 162096598 162096914 -65427664 + AluSx SINE Alu 1 309 -3 691 64 0 5 chr3 162097256 162097460 -65427118 - AluY SINE Alu -10 301 1 671 234 159 26 chr3 162097474 162097700 -65426878 - MIR SINE MIR -2 260 5 1807 146 36 0 chr3 162097897 162098198 -65426380 + AluJb SINE Alu 1 312 0 22 0 0 0 chr3 162098504 162098526 -65426052 + AT_rich Low_complexity Low_complexity 1 22 0 1536 135 97 0 chr3 162098529 162098788 -65425790 - AluSx SINE Alu -28 284 1 1572 134 51 40 chr3 162098817 162099116 -65425462 + AluSx SINE Alu 3 304 0 1393 185 13 27 chr3 162099272 162099570 -65425008 + MER33 DNA MER1_type 31 324 0 2342 67 3 16 chr3 162099699 162100013 -65424565 + AluY SINE Alu 1 310 -1 1988 22 0 74 chr3 162101019 162101289 -65423289 - AluY SINE Alu -9 302 53 1175 115 44 0 chr3 162102960 162103142 -65421436 + AluSg/x SINE Alu 120 309 -1 3558 169 75 16 chr3 162103237 162103931 -65420647 - L1MB5 LINE L1 -9 6165 5431 205 225 0 0 chr3 162104863 162104903 -65419675 + MIR3 SINE MIR 116 155 -53 2324 89 0 3 chr3 162104961 162105274 -65419304 + AluSx SINE Alu 1 312 0 481 339 196 10 chr3 162105809 162106396 -65418182 - L2 LINE L2 -553 2761 2066 1001 94 0 0 chr3 162106399 162106537 -65418041 + Alu SINE Alu 167 304 -6 890 242 86 68 chr3 162106574 162106971 -65417607 - MLT1J LTR MaLR 0 511 108 281 258 0 15 chr3 162107126 162107192 -65417386 - MLT1L LTR MaLR -550 65 1 180 261 58 0 chr3 162107192 162107261 -65417317 - L2 LINE L2 -1293 2021 1949 1597 160 142 41 chr3 162108442 162108829 -65415749 + MSTC LTR MaLR 3 428 0 1254 129 122 84 chr3 162109083 162109192 -65415386 + AluJo SINE Alu 2 105 -207 2050 122 3 0 chr3 162109192 162109488 -65415090 + AluSx SINE Alu 1 297 -15 1254 129 122 84 chr3 162109488 162109664 -65414914 + AluJo SINE Alu 105 298 -14 381 250 97 26 chr3 162109669 162109933 -65414645 - MLT1J LTR MaLR -193 318 1 2038 210 65 76 chr3 162110031 162110204 -65414374 + MLT1E1 LTR MaLR 1 174 -480 1939 122 14 7 chr3 162110204 162110499 -65414079 + AluSg SINE Alu 1 297 -13 2038 210 65 76 chr3 162110499 162110986 -65413592 + MLT1E1 LTR MaLR 174 654 0 2143 110 3 3 chr3 162111050 162111351 -65413227 + AluSq SINE Alu 1 301 -12 1802 169 0 7 chr3 162111434 162111741 -65412837 + AluJo SINE Alu 1 305 -7 423 374 17 26 chr3 162111896 162112126 -65412452 - L2 LINE L2 -515 2799 2572 250 254 99 14 chr3 162112388 162112459 -65412119 + MIR3 SINE MIR 11 87 -121 1519 162 71 0 chr3 162112558 162112824 -65411754 - AluSx SINE Alu -27 285 1 964 312 166 7 chr3 162112929 162113374 -65411204 - MLT1K LTR MaLR -60 528 13 294 292 0 0 chr3 162113530 162113602 -65410976 - MIR SINE MIR -80 182 111 1934 131 10 0 chr3 162113710 162114007 -65410571 - AluY SINE Alu -11 300 1 2196 100 0 0 chr3 162114274 162114573 -65410005 - AluSx SINE Alu -13 299 1 430 314 19 75 chr3 162115363 162115431 -65409147 - L2 LINE L2 0 3272 3202 2278 95 0 0 chr3 162115431 162115736 -65408842 + AluSx SINE Alu 1 305 -7 430 314 19 75 chr3 162115736 162115826 -65408752 - L2 LINE L2 -70 3202 3123 2192 107 0 3 chr3 162115830 162116129 -65408449 + AluSx SINE Alu 1 298 -14 242 132 53 0 chr3 162116318 162116356 -65408222 - LTR16A1 LTR ERVL 0 457 418 2712 230 75 39 chr3 162116383 162117126 -65407452 + MER21B LTR ERV1 1 770 -93 518 272 47 43 chr3 162117197 162117476 -65407102 - LTR16A LTR ERVL -104 346 67 595 260 12 18 chr3 162117476 162117719 -65406859 - MER45C DNA AcHobo 0 953 677 * 1090 231 183 6 chr3 162117695 162118007 -65406571 - MER45C DNA AcHobo -561 392 26 624 324 125 21 chr3 162118087 162118559 -65406019 - L2 LINE L2 -338 2976 2456 345 307 50 85 chr3 162118635 162118914 -65405664 - L2 LINE L2 -65 3207 2953 1016 187 42 19 chr3 162118914 162119128 -65405450 + MER20 DNA MER1_type 1 219 0 345 307 50 85 chr3 162119128 162119359 -65405219 - L2 LINE L2 -319 2953 2715 766 150 8 30 chr3 162119367 162119500 -65405078 + FLAM_C SINE Alu 1 130 -3 187 128 0 106 chr3 162119805 162119852 -65404726 + MIR SINE MIR 46 87 -175 206 255 78 0 chr3 162119939 162119990 -65404588 + MER91 DNA MER1_type 136 190 0 185 300 0 0 chr3 162120084 162120134 -65404444 + L2 LINE L2 3210 3259 -13 276 350 186 6 chr3 162120620 162120797 -65403781 - MIR SINE MIR -24 238 30 198 71 0 0 chr3 162122158 162122186 -65402392 + (CA)n Simple_repeat Simple_repeat 2 29 0 2161 110 3 0 chr3 162123040 162123332 -65401246 + AluSx SINE Alu 1 293 -19 635 216 111 12 chr3 162123364 162123526 -65401052 + MIR SINE MIR 85 262 0 827 227 36 84 chr3 162123995 162124330 -65400248 + HAL1 LINE L1 764 1082 -1425 333 312 108 13 chr3 162124521 162124678 -65399900 - MER91A DNA MER1_type -24 172 1 208 283 14 117 chr3 162125222 162125367 -65399211 - MIR SINE MIR -22 240 111 891 174 14 0 chr3 162125525 162125669 -65398909 + AluSg/x SINE Alu 143 288 -24 432 0 0 0 chr3 162126201 162126249 -65398329 + (TG)n Simple_repeat Simple_repeat 1 48 0 1158 250 140 23 chr3 162128295 162128912 -65395666 - L2 LINE L2 -5 3308 2622 647 284 95 62 chr3 162128994 162129572 -65395006 + HAL1 LINE L1 533 1129 -1378 1578 285 105 8 chr3 162130040 162130599 -65393979 + HAL1 LINE L1 1128 1758 -749 2042 113 10 13 chr3 162130599 162130930 -65393648 + AluSx SINE Alu 1 312 0 1578 285 105 8 chr3 162130930 162131006 -65393572 + HAL1 LINE L1 1758 1825 -682 603 53 0 13 chr3 162131098 162131173 -65393405 + AluSq/x SINE Alu 61 134 -179 326 209 217 41 chr3 162131178 162131422 -65393156 + HAL1 LINE L1 1926 2212 -295 293 234 0 64 chr3 162131603 162131697 -65392881 + MER113 DNA MER1_type? 390 477 -44 355 271 29 35 chr3 162132181 162132351 -65392227 - MLT1J LTR MaLR -116 395 227 2112 87 76 0 chr3 162132378 162132666 -65391912 - AluSp SINE Alu -3 310 1 818 284 61 15 chr3 162133098 162133581 -65390997 - MLT1K LTR MaLR -3 585 2 257 333 18 23 chr3 162133584 162133755 -65390823 - L2 LINE L2 -554 2760 2591 2305 95 0 3 chr3 162134997 162135292 -65389286 - AluSx SINE Alu -18 294 1 480 246 50 119 chr3 162135422 162135575 -65389003 + MIR SINE MIR 5 132 -130 1888 173 0 7 chr3 162135575 162135876 -65388702 + AluJo SINE Alu 1 299 -13 480 246 50 119 chr3 162135876 162135999 -65388579 + MIR SINE MIR 132 262 0 2344 93 0 3 chr3 162136276 162136578 -65388000 + AluSx SINE Alu 1 301 -11 2238 103 7 0 chr3 162136770 162137071 -65387507 + AluSc SINE Alu 5 307 -2 570 329 89 14 chr3 162137098 162137457 -65387121 + L1MC4a LINE L1 5520 5905 -1903 3266 132 46 16 chr3 162137458 162138019 -65386559 + L1MB2 LINE L1 5594 6171 0 291 325 129 43 chr3 162138471 162138982 -65385596 - L2 LINE L2 -459 2855 2301 216 0 0 0 chr3 162139376 162139400 -65385178 + (TG)n Simple_repeat Simple_repeat 2 25 0 569 250 95 101 chr3 162139801 162140317 -65384261 + MER34 LTR ERV1 25 537 -5 242 330 80 0 chr3 162141865 162141953 -65382625 + MIR3 SINE MIR 64 158 -50 538 205 105 21 chr3 162142042 162142232 -65382346 + Charlie1 DNA MER1_type 26 231 -2530 315 264 47 28 chr3 162142293 162142399 -65382179 - L1MC4 LINE L1 -1322 6720 6613 515 119 36 12 chr3 162142408 162142492 -65382086 + Charlie1 DNA MER1_type 2676 2761 0 404 280 113 5 chr3 162142518 162142704 -65381874 - L2 LINE L2 0 3313 3108 1171 136 52 84 chr3 162144482 162144733 -65379845 + AluJb SINE Alu 58 300 -12 273 272 146 0 chr3 162145767 162145870 -65378708 + MIR3 SINE MIR 82 199 -9 1635 75 57 22 chr3 162146665 162146893 -65377685 - L1PA13 LINE L1 0 6163 5928 2564 31 0 0 chr3 162146897 162147185 -65377393 - AluY SINE Alu -4 307 20 324 284 114 69 chr3 162147303 162147450 -65377128 - MIR SINE MIR -61 147 1 28 29 0 0 chr3 162147624 162147659 -65376919 + AT_rich Low_complexity Low_complexity 1 35 0 23 54 0 0 chr3 162148487 162148524 -65376054 + AT_rich Low_complexity Low_complexity 1 37 0 252 250 25 0 chr3 162149003 162149083 -65375495 + CT-rich Low_complexity Low_complexity 3 84 0 2375 99 0 0 chr3 162150651 162150954 -65373624 - AluSx SINE Alu -9 303 1 563 197 176 10 chr3 162152129 162152322 -65372256 - MER20B DNA MER1_type 0 783 559 2094 105 37 0 chr3 162152325 162152619 -65371959 + AluSq SINE Alu 5 309 -4 937 204 24 6 chr3 162152655 162152822 -65371756 + FAM SINE Alu 1 170 -5 2174 118 7 3 chr3 162152922 162153218 -65371360 - AluSq SINE Alu -16 297 1 21 0 0 0 chr3 162153296 162153317 -65371261 + AT_rich Low_complexity Low_complexity 1 21 0 690 230 42 101 chr3 162153497 162153627 -65370951 + MIR SINE MIR 37 150 -112 2058 122 7 11 chr3 162153627 162153913 -65370665 + AluJb SINE Alu 1 285 -27 690 230 42 101 chr3 162153913 162153999 -65370579 + MIR SINE MIR 150 240 -22 1888 161 0 19 chr3 162154240 162154557 -65370021 - AluJb SINE Alu -1 311 1 737 12 0 0 chr3 162154630 162154711 -65369867 + AluY SINE Alu 218 298 -13 458 45 45 30 chr3 162154787 162154854 -65369724 - MADE1 DNA Mariner 0 80 13 998 218 78 4 chr3 162155031 162155274 -65369304 + MIR SINE MIR 2 262 0 1058 189 12 0 chr3 162155571 162155740 -65368838 + FAM SINE Alu 4 174 -1 29 0 0 0 chr3 162155972 162156001 -65368577 + AT_rich Low_complexity Low_complexity 1 29 0 1054 209 30 0 chr3 162156360 162156561 -65368017 - MER3 DNA MER1_type 0 209 3 1289 149 28 9 chr3 162156962 162157177 -65367401 + MER20 DNA MER1_type 1 219 0 807 255 76 36 chr3 162157261 162157419 -65367159 - MIR SINE MIR -1 261 88 1069 202 163 39 chr3 162157419 162157751 -65366827 + MLT1A2 LTR MaLR 1 373 -1 807 255 76 36 chr3 162157751 162157843 -65366735 - MIR SINE MIR -174 88 1 2342 116 21 15 chr3 162158040 162158375 -65366203 - MER1B DNA MER1_type 0 337 1 456 292 92 21 chr3 162158777 162159017 -65365561 - MLT1L LTR MaLR -4 611 355 1068 126 0 36 chr3 162159110 162159277 -65365301 - AluSg/x SINE Alu -9 303 143 734 191 0 0 chr3 162159900 162160015 -65364563 + FLAM_A SINE Alu 1 115 -18 207 0 0 0 chr3 162160025 162160048 -65364530 + (TGAA)n Simple_repeat Simple_repeat 3 25 0 976 231 21 12 chr3 162160195 162160437 -65364141 + L1ME4a LINE L1 5323 5566 -598 484 224 12 0 chr3 162161686 162161771 -65362807 + AluJb SINE Alu 2 87 -225 2267 118 0 0 chr3 162161771 162162068 -65362510 + AluSx SINE Alu 1 297 -15 2411 105 0 0 chr3 162162069 162162382 -65362196 + AluSp SINE Alu 1 313 0 1586 143 0 0 chr3 162162382 162162612 -65361966 + AluJb SINE Alu 73 303 -9 290 240 71 116 chr3 162163348 162163541 -65361037 + MIR SINE MIR 20 210 -52 273 258 56 0 chr3 162163848 162163937 -65360641 - MIR3 SINE MIR -22 186 93 368 250 15 39 chr3 162163991 162164165 -65360413 - MLT1L LTR MaLR -343 168 1 1233 157 20 71 chr3 162164923 162165008 -65359570 + L1MB2 LINE L1 5887 5975 -196 2172 114 0 0 chr3 162165008 162165305 -65359273 + AluSg SINE Alu 1 297 -13 1233 157 20 71 chr3 162165305 162165474 -65359104 + L1MB2 LINE L1 5975 6128 -43 659 267 111 9 chr3 162165727 162165944 -65358634 - MLT1I LTR MaLR -70 339 101 424 287 120 42 chr3 162165996 162166598 -65357980 + L1M4 LINE L1 2926 3574 -2572 322 271 98 44 chr3 162168166 162168294 -65356284 + MLT1K LTR MaLR 375 519 -69 2159 112 0 40 chr3 162168294 162168615 -65355963 - AluSx SINE Alu -4 308 1 322 271 98 44 chr3 162168615 162168689 -65355889 + MLT1K LTR MaLR 519 588 0 421 79 0 0 chr3 162169021 162169084 -65355494 + Alu SINE Alu 245 307 -3 691 229 142 39 chr3 162169105 162169415 -65355163 + L1ME4a LINE L1 5542 5883 -238 237 178 188 20 chr3 162169560 162169661 -65354917 + L1ME4a LINE L1 5982 6099 -22 2163 119 3 3 chr3 162170062 162170355 -65354223 + AluSx SINE Alu 1 293 -19 201 147 0 0 chr3 162170651 162170685 -65353893 + (CAA)n Simple_repeat Simple_repeat 1 34 0 912 235 41 25 chr3 162170691 162170934 -65353644 - MIR SINE MIR -10 252 6 198 0 0 0 chr3 162171042 162171064 -65353514 + (CAAA)n Simple_repeat Simple_repeat 3 24 0 556 101 50 8 chr3 162171356 162171475 -65353103 + CT-rich Low_complexity Low_complexity 1 124 0 2177 95 3 43 chr3 162171486 162171811 -65352767 - AluSx SINE Alu 0 312 1 409 310 107 29 chr3 162171834 162172076 -65352502 - MLT1L LTR MaLR -18 597 337 579 98 63 0 chr3 162172097 162172108 -65352470 + GA-rich Low_complexity Low_complexity 2 11 -142 2066 86 34 7 chr3 162172108 162172400 -65352178 + AluSx SINE Alu 1 300 -12 579 98 63 0 chr3 162172400 162172531 -65352047 + GA-rich Low_complexity Low_complexity 11 153 0 1992 115 7 3 chr3 162172946 162173260 -65351318 + AluSx SINE Alu 1 315 0 235 136 106 0 chr3 162173278 162173344 -65351234 - L1ME1 LINE L1 -6 6160 6088 23 0 0 0 chr3 162174684 162174707 -65349871 + AT_rich Low_complexity Low_complexity 1 23 0 2274 86 0 9 chr3 162175025 162175340 -65349238 - AluSq SINE Alu -1 312 1 239 277 59 17 chr3 162175508 162175627 -65348951 + MLT1J2 LTR MaLR 20 143 -307 1538 99 0 9 chr3 162175634 162175845 -65348733 + AluSg/x SINE Alu 77 285 -25 22 0 0 0 chr3 162175846 162175868 -65348710 + AT_rich Low_complexity Low_complexity 1 22 0 435 184 9 18 chr3 162175963 162176077 -65348501 + GA-rich Low_complexity Low_complexity 1 113 0 1855 204 56 0 chr3 162176077 162176450 -65348128 - MLT2D LTR ERVL -20 394 1 365 290 6 74 chr3 162176454 162176616 -65347962 - MIR3 SINE MIR -56 152 2 1853 168 3 0 chr3 162176646 162176956 -65347622 - AluJo SINE Alu -1 311 1 562 238 210 5 chr3 162177100 162177314 -65347264 - MLT1L LTR MaLR -337 278 21 913 144 44 0 chr3 162177530 162177690 -65346888 - MLT1D LTR MaLR 0 505 339 1827 134 0 50 chr3 162177813 162178134 -65346444 + AluSx SINE Alu 1 305 -7 260 256 93 31 chr3 162178200 162178329 -65346249 - MER65A LTR ERV1 -308 137 1 1330 159 20 4 chr3 162178329 162178632 -65345946 - MLT1D LTR MaLR -164 341 4 2159 118 0 0 chr3 162179003 162179308 -65345270 - AluSx SINE Alu -7 305 1 673 272 33 11 chr3 162179707 162179887 -65344691 + MER63A DNA MER1_type 1 184 -26 216 306 0 0 chr3 162180153 162180215 -65344363 + GA-rich Low_complexity Low_complexity 3 64 0 425 254 354 6 chr3 162180407 162180738 -65343840 - L2 LINE L2 -2095 1219 774 476 269 74 7 chr3 162180753 162180902 -65343676 - MLT1J2 LTR MaLR -18 432 274 580 171 0 47 chr3 162180906 162181014 -65343564 + Charlie5 DNA MER1_type 1 104 -2520 2080 99 0 7 chr3 162181014 162181306 -65343272 + AluSg SINE Alu 1 290 -20 580 171 0 47 chr3 162181306 162181326 -65343252 + Charlie5 DNA MER1_type 104 123 -2501 270 70 298 0 chr3 162181324 162181381 -65343197 + Charlie5 DNA MER1_type 2265 2338 -274 * 391 109 109 0 chr3 162181382 162181446 -65343132 + MER41A LTR ERV1 400 470 -84 1498 174 16 23 chr3 162181470 162181774 -65342804 - AluJo SINE Alu -10 302 1 1438 152 14 34 chr3 162181774 162181978 -65342600 + Charlie5 DNA MER1_type 2334 2532 -92 1928 139 10 0 chr3 162181978 162182281 -65342297 - AluSx SINE Alu -6 306 1 1438 152 14 34 chr3 162182281 162182373 -65342205 + Charlie5 DNA MER1_type 2532 2624 0 369 282 103 0 chr3 162182451 162182568 -65342010 - MLT1J1 LTR MaLR -317 129 1 1064 241 136 13 chr3 162182573 162182947 -65341631 - L2 LINE L2 -2541 773 354 439 206 69 10 chr3 162182946 162183048 -65341530 + MIR SINE MIR 82 189 -73 * 1082 149 6 0 chr3 162183057 162183225 -65341353 - Tigger5 DNA MER2_type 0 2323 2155 266 159 302 0 chr3 162183285 162183348 -65341230 - Tigger5 DNA MER2_type -2240 83 2 2050 125 0 19 chr3 162183423 162183629 -65340949 - AluSx SINE Alu 0 312 140 2158 89 0 10 chr3 162183629 162183931 -65340647 - AluY SINE Alu -12 299 1 2050 125 0 19 chr3 162183931 162184069 -65340509 - AluSx SINE Alu -172 140 1 849 135 8 15 chr3 162185083 162185216 -65339362 + FLAM_C SINE Alu 2 133 0 2160 94 40 0 chr3 162185249 162185547 -65339031 - AluSq SINE Alu -3 310 1 26 0 0 0 chr3 162185706 162185732 -65338846 + AT_rich Low_complexity Low_complexity 1 26 0 2203 97 0 10 chr3 162186076 162186387 -65338191 - AluSg1 SINE Alu -1 308 1 193 314 70 0 chr3 162186841 162186927 -65337651 - MIR SINE MIR -9 253 162 * 205 278 97 0 chr3 162186925 162186997 -65337581 + MIR SINE MIR 79 157 -105 23 33 0 0 chr3 162187111 162187141 -65337437 + AT_rich Low_complexity Low_complexity 1 30 0 2019 115 158 6 chr3 162187147 162187495 -65337083 + MSTA LTR MaLR 1 401 -27 2540 39 58 3 chr3 162187501 162187810 -65336768 - LTR17 LTR ERV1 -454 326 1 12262 42 1 1 chr3 162187810 162189225 -65335353 - HERV17 LTR ERV1 0 8626 7212 2072 133 0 0 chr3 162189225 162189527 -65335051 - AluSx SINE Alu -10 302 1 305 98 0 0 chr3 162189527 162189568 -65335010 + MSTA LTR MaLR 388 428 0 1862 139 0 7 chr3 162190489 162190815 -65333763 - AluSg SINE Alu 0 310 1 637 243 11 28 chr3 162191078 162191255 -65333323 + MER5B DNA MER1_type 1 174 -4 1466 68 0 0 chr3 162192494 162192685 -65331893 + AluY SINE Alu 119 309 -2 1064 178 119 96 chr3 162192685 162193240 -65331338 + L1MC5 LINE L1 7360 7927 -34 296 209 99 166 chr3 162193250 162193433 -65331145 + HAL1 LINE L1 1102 1296 -1211 1316 191 60 4 chr3 162193433 162193700 -65330878 + AluJo SINE Alu 1 282 -30 296 209 99 166 chr3 162193700 162193713 -65330865 + HAL1 LINE L1 1296 1308 -1199 270 0 0 0 chr3 162193713 162193743 -65330835 + (CA)n Simple_repeat Simple_repeat 1 30 0 296 209 99 166 chr3 162193743 162193889 -65330689 + HAL1 LINE L1 1308 1422 -1085 1843 164 37 6 chr3 162194428 162194491 -65330087 - L1MB8 LINE L1 -1 6177 6117 1795 108 42 18 chr3 162194491 162194777 -65329801 + AluSx SINE Alu 1 293 -19 1843 164 37 6 chr3 162194777 162195066 -65329512 - L1MB8 LINE L1 -61 6117 5814 1898 93 41 0 chr3 162195087 162195355 -65329223 - AluSg SINE Alu -31 279 1 288 71 24 0 chr3 162195355 162195397 -65329181 - L1MB8 LINE L1 -353 5831 5789 761 193 4 0 chr3 162195878 162196107 -65328471 + (CA)n Simple_repeat Simple_repeat 1 230 0 251 122 41 0 chr3 162196107 162196156 -65328422 - MER4-int LTR ERV1 -5436 1162 1112 809 197 3 0 chr3 162196170 162196465 -65328113 + (CA)n Simple_repeat Simple_repeat 1 295 0 443 98 0 0 chr3 162196836 162196897 -65327681 + MER94 DNA DNA 72 132 -2 829 164 86 7 chr3 162197152 162197304 -65327274 - FAM SINE Alu -8 167 4 247 216 68 14 chr3 162197404 162197478 -65327100 - L1MB8 LINE L1 -392 5772 5695 1974 122 0 0 chr3 162197627 162197914 -65326664 + AluSx SINE Alu 1 287 -25 192 152 0 0 chr3 162197914 162197947 -65326631 + (TA)n Simple_repeat Simple_repeat 1 33 0 921 100 31 0 chr3 162198076 162198206 -65326372 - AluSg SINE Alu -176 134 1 278 350 43 7 chr3 162198442 162198582 -65325996 + L3 LINE CR1 1425 1569 -8 197 343 30 0 chr3 162198621 162198688 -65325890 - L2 LINE L2 -2997 317 249 2311 66 3 0 chr3 162198736 162199024 -65325554 + AluSp SINE Alu 1 289 -24 1078 108 6 6 chr3 162199028 162199220 -65325358 + AluSg/x SINE Alu 127 318 0 2159 96 7 0 chr3 162199239 162199532 -65325046 + AluSx SINE Alu 1 295 -17 966 231 66 4 chr3 162199703 162199945 -65324633 - L1ME LINE L1 -316 5805 5549 1270 230 20 113 chr3 162200902 162201397 -65323181 + L1ME3A LINE L1 5698 6146 -24 298 236 219 8 chr3 162201772 162201895 -65322683 + MIR SINE MIR 106 254 -8 300 255 76 83 chr3 162201898 162202043 -65322535 - MIR SINE MIR -114 148 5 203 246 0 35 chr3 162202099 162202156 -65322422 - L2 LINE L2 -262 3051 2997 1879 147 3 7 chr3 162202313 162202620 -65321958 - AluSx SINE Alu -6 306 1 264 100 0 0 chr3 162202715 162202755 -65321823 + (TG)n Simple_repeat Simple_repeat 2 41 0 622 207 72 119 chr3 162203169 162203420 -65321158 - MIR SINE MIR -3 259 21 1956 122 0 7 chr3 162204042 162204354 -65320224 - AluSx SINE Alu 0 310 1 2221 105 3 0 chr3 162205405 162205711 -65318867 - AluSp SINE Alu -5 308 2 2192 82 0 0 chr3 162205723 162206038 -65318540 - AluY SINE Alu 0 315 1 1333 168 0 0 chr3 162206049 162206269 -65318309 - AluSg/x SINE Alu -10 302 83 1035 127 12 0 chr3 162206603 162206768 -65317810 + AluSg/x SINE Alu 134 300 -10 790 230 19 0 chr3 162207516 162207677 -65316901 - MER96 DNA MER1_type? -5 170 7 583 247 84 0 chr3 162207858 162208024 -65316554 + MIR SINE MIR 71 250 -12 598 168 76 23 chr3 162208290 162208421 -65316157 - MER53 DNA DNA -51 138 1 739 152 37 37 chr3 162208946 162209137 -65315441 - LTR37A LTR ERV1 -18 408 218 1509 177 54 26 chr3 162209142 162209478 -65315100 + MLT1B LTR MaLR 1 390 0 435 206 144 0 chr3 162209490 162209587 -65314991 - LTR37A LTR ERV1 -257 169 59 213 39 0 0 chr3 162210668 162210694 -65313884 + (CA)n Simple_repeat Simple_repeat 1 26 0 315 180 66 16 chr3 162210740 162210801 -65313777 + MER58A DNA MER1_type 4 67 -40 260 149 0 0 chr3 162210798 162210845 -65313733 - AluJb SINE Alu -4 298 252 * 1039 142 0 44 chr3 162210845 162211028 -65313550 - AluJb SINE Alu -137 175 1 360 139 295 93 chr3 162211028 162211129 -65313449 + MER58A DNA MER1_type 58 192 -2228 2350 48 0 41 chr3 162211129 162211443 -65313135 - AluY SINE Alu -10 301 1 360 139 295 93 chr3 162211443 162211470 -65313108 + MER58A DNA MER1_type 192 212 -12 345 62 0 21 chr3 162211480 162211528 -65313050 - LTR37A LTR ERV1 -379 47 1 909 158 36 0 chr3 162262319 162262484 -65262094 + AluSg/x SINE Alu 137 307 -5 511 256 17 17 chr3 162262550 162262730 -65261848 + L1ME2 LINE L1 5974 6153 -11 1828 122 7 37 chr3 162262845 162263116 -65261462 - AluSx SINE Alu -49 263 1 408 254 124 11 chr3 162263213 162263390 -65261188 - L1MEd LINE L1 -4938 1181 985 324 276 43 52 chr3 162263434 162263644 -65260934 - L1ME1 LINE L1 -5 6161 5954 1602 107 24 142 chr3 162263898 162264100 -65260478 - AluSx SINE Alu 0 302 154 2376 101 0 0 chr3 162264100 162264408 -65260170 - AluSx SINE Alu 0 312 5 1602 107 24 142 chr3 162264408 162264543 -65260035 - AluSx SINE Alu -148 154 5 761 173 0 0 chr3 162264549 162264682 -65259896 - FLAM_C SINE Alu 0 133 1 1124 123 135 37 chr3 162265742 162265902 -65258676 + MSTA LTR MaLR 161 355 -73 2595 105 6 3 chr3 162265902 162266265 -65258313 - THE1B LTR MaLR 0 364 1 1124 123 135 37 chr3 162266265 162266348 -65258230 + MSTA LTR MaLR 355 428 0 2067 222 36 36 chr3 162266800 162267386 -65257192 - L1ME2 LINE L1 -5 6159 5574 404 235 167 8 chr3 162267622 162267754 -65256824 + MER58A DNA MER1_type 30 182 -42 1686 199 0 17 chr3 162267857 162268159 -65256419 - AluJb SINE Alu -15 297 1 195 281 219 0 chr3 162268160 162268274 -65256304 - MIR3 SINE MIR -57 151 13 396 0 0 0 chr3 162268950 162268994 -65255584 + (TG)n Simple_repeat Simple_repeat 2 45 0 2302 128 3 0 chr3 162269127 162269439 -65255139 + AluSq SINE Alu 1 313 0 2268 62 41 18 chr3 162270046 162270421 -65254157 - MLT2A1 LTR ERVL 0 453 1 1660 142 6 95 chr3 162271352 162271669 -65252909 - AluJb SINE Alu -23 289 1 299 318 63 34 chr3 162271917 162271989 -65252589 - L2 LINE L2 -982 2332 2264 2388 95 0 7 chr3 162271989 162272295 -65252283 + AluSp SINE Alu 1 304 -9 299 318 63 34 chr3 162272295 162272461 -65252117 - L2 LINE L2 -1050 2264 2087 237 162 203 27 chr3 162272519 162272593 -65251985 + L1ME4a LINE L1 5957 6043 -78 826 73 121 0 chr3 162273124 162273248 -65251330 - MER85 DNA T2_type 0 139 1 2248 111 7 0 chr3 162273645 162273952 -65250626 - AluSq SINE Alu -4 309 1 269 313 26 43 chr3 162273979 162274094 -65250484 + MIR3 SINE MIR 48 160 -48 369 184 126 105 chr3 162274095 162274285 -65250293 + MER112 DNA MER1_type 2 195 -65 216 0 0 0 chr3 162275039 162275063 -65249515 + (A)n Simple_repeat Simple_repeat 1 24 0 2320 83 0 23 chr3 162275085 162275385 -65249193 - AluSx SINE Alu -19 293 1 326 221 142 37 chr3 162275424 162275614 -65248964 + L1ME LINE L1 5485 5694 -427 212 260 117 0 chr3 162275793 162275870 -65248708 - MER91A DNA MER1_type -10 186 101 419 246 53 26 chr3 162275885 162275999 -65248579 - MER91A DNA MER1_type -25 171 55 450 241 63 51 chr3 162276639 162276797 -65247781 + MIR3 SINE MIR 30 189 -19 23 33 0 0 chr3 162277657 162277687 -65246891 + GC_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr3 162277726 162277759 -65246819 + GC_rich Low_complexity Low_complexity 1 33 0 25 51 0 0 chr3 162277904 162277943 -65246635 + GC_rich Low_complexity Low_complexity 1 39 0 5674 108 91 115 chr3 162278098 162278578 -65246000 - Tigger3b DNA MER2_type -1811 1217 727 812 154 0 23 chr3 162278578 162278708 -65245870 - FLAM_C SINE Alu -15 128 2 5674 108 91 115 chr3 162278708 162279345 -65245233 - Tigger3b DNA MER2_type -2301 727 1 267 103 0 26 chr3 162279386 162279425 -65245153 + Tigger3(Golem) DNA MER2_type 2200 2237 -792 2281 115 0 3 chr3 162279428 162279741 -65244837 - AluSx SINE Alu 0 312 1 1906 219 45 39 chr3 162279742 162280300 -65244278 - L1ME1 LINE L1 -284 5882 5322 989 190 100 10 chr3 162280321 162280521 -65244057 + AluJo SINE Alu 1 218 -94 357 96 0 5 chr3 162280523 162280578 -65244000 + AluSq/x SINE Alu 86 133 -169 1139 119 21 62 chr3 162280593 162280786 -65243792 + AluJo SINE Alu 108 292 -20 441 157 56 37 chr3 162280801 162280909 -65243669 - L1ME1 LINE L1 -859 5287 5178 26 30 0 0 chr3 162281852 162281885 -65242693 + AT_rich Low_complexity Low_complexity 1 33 0 2272 129 0 0 chr3 162281951 162282261 -65242317 - AluSx SINE Alu -2 310 1 3869 205 50 3 chr3 162282261 162283474 -65241104 + L1MB8 LINE L1 4887 6157 -21 2309 100 3 0 chr3 162283839 162284130 -65240448 + AluSp SINE Alu 1 292 -21 1021 172 0 0 chr3 162284135 162284292 -65240286 + FRAM SINE Alu 1 156 -20 1279 249 173 58 chr3 162284301 162284924 -65239654 + MER21B LTR ERV1 20 714 -149 2259 122 0 0 chr3 162285031 162285334 -65239244 - AluSx SINE Alu -9 303 1 338 225 135 11 chr3 162286122 162286211 -65238367 + MER58A DNA MER1_type 1 100 -7 21 0 0 0 chr3 162287147 162287168 -65237410 + AT_rich Low_complexity Low_complexity 1 21 0 811 95 0 0 chr3 162287177 162287282 -65237296 - U6 snRNA snRNA -2 105 1 601 151 76 34 chr3 162287282 162287391 -65237187 - AluJo SINE Alu -183 129 13 2399 83 3 13 chr3 162288022 162288335 -65236243 - AluSp SINE Alu -2 311 2 2464 85 0 3 chr3 162288955 162289262 -65235316 - AluSq SINE Alu -7 306 1 928 177 85 0 chr3 162289551 162289715 -65234863 + MER20 DNA MER1_type 41 218 -1 430 196 58 29 chr3 162290175 162290348 -65234230 + (TA)n Simple_repeat Simple_repeat 2 179 0 2279 115 0 0 chr3 162290435 162290731 -65233847 - AluSx SINE Alu -16 296 1 2124 85 3 69 chr3 162291589 162291906 -65232672 + AluSq SINE Alu 1 296 -17 471 17 0 0 chr3 162292328 162292386 -65232192 - L1PA6 LINE L1 0 6154 6097 537 343 94 33 chr3 162292665 162293423 -65231155 + L2 LINE L2 972 1775 -1539 1261 241 126 13 chr3 162293536 162294221 -65230357 - L2 LINE L2 0 3313 2531 1782 158 40 10 chr3 162294223 162294526 -65230052 - AluJo SINE Alu 0 312 1 559 303 49 32 chr3 162294861 162295208 -65229370 - HAL1 LINE L1 -571 1936 1584 687 291 144 52 chr3 162295210 162295744 -65228834 - HAL1 LINE L1 -1027 1480 885 2143 133 7 0 chr3 162295744 162296046 -65228532 - AluSx SINE Alu -8 304 1 687 291 144 52 chr3 162296046 162296103 -65228475 - HAL1 LINE L1 -1622 885 835 1760 97 75 30 chr3 162296518 162296812 -65227766 - AluSg SINE Alu 0 306 1 212 383 70 9 chr3 162296906 162297021 -65227557 + L2 LINE L2 3119 3240 -32 237 326 45 82 chr3 162297141 162297386 -65227192 + L2 LINE L2 2599 2834 -480 231 288 0 38 chr3 162297526 162297606 -65226972 + L2 LINE L2 3134 3210 -62 25 65 0 0 chr3 162299869 162299915 -65224663 + AT_rich Low_complexity Low_complexity 1 46 0 389 241 75 40 chr3 162300503 162300677 -65223901 + MER104 DNA MER2_type 1 180 0 711 173 101 73 chr3 162301009 162301114 -65223464 - MER5A DNA MER1_type 0 189 75 2094 83 52 10 chr3 162301114 162301404 -65223174 - AluY SINE Alu -9 302 1 711 173 101 73 chr3 162301404 162301477 -65223101 - MER5A DNA MER1_type -114 75 6 190 196 107 80 chr3 162301770 162301882 -65222696 + MIR3 SINE MIR 1 115 -93 261 83 0 0 chr3 162302674 162302710 -65221868 + (TTCA)n Simple_repeat Simple_repeat 1 36 0 1574 95 92 108 chr3 162302806 162303112 -65221466 - AluSq SINE Alu -12 301 1 287 146 91 0 chr3 162303119 162303174 -65221404 - LTR54 LTR ERV1 -50 460 401 330 26 0 0 chr3 162303392 162303431 -65221147 + (CA)n Simple_repeat Simple_repeat 2 40 0 1640 153 33 36 chr3 162303528 162303798 -65220780 + AluJb SINE Alu 6 276 -36 216 0 0 0 chr3 162303798 162303822 -65220756 + (CAA)n Simple_repeat Simple_repeat 1 24 0 1640 153 33 36 chr3 162303822 162303858 -65220720 + AluJb SINE Alu 276 311 -1 2361 84 0 10 chr3 162303889 162304185 -65220393 + AluSg SINE Alu 1 293 -17 2289 96 0 10 chr3 162304207 162304508 -65220070 + AluSg1 SINE Alu 1 298 -11 2540 71 0 0 chr3 162304766 162305076 -65219502 - AluY SINE Alu -1 310 1 2125 99 36 3 chr3 162305078 162305381 -65219197 - AluSq SINE Alu 0 313 1 1790 90 0 0 chr3 162305381 162305604 -65218974 - AluSc SINE Alu -84 225 3 2319 93 3 0 chr3 162306465 162306767 -65217811 - AluSq SINE Alu -10 303 1 1085 126 0 0 chr3 162306882 162307041 -65217537 - AluSg/x SINE Alu 0 310 152 1652 120 9 0 chr3 162307224 162307449 -65217129 + AluSx SINE Alu 1 227 -85 2501 78 0 0 chr3 162307449 162307755 -65216823 + AluSc SINE Alu 1 306 -3 22 0 0 0 chr3 162307773 162307795 -65216783 + AT_rich Low_complexity Low_complexity 1 22 0 1342 175 89 12 chr3 162307826 162308083 -65216495 + AluJo SINE Alu 17 293 -19 2075 126 0 10 chr3 162308816 162309110 -65215468 + AluSx SINE Alu 1 291 -21 2394 118 99 32 chr3 162309257 162309816 -65214762 + MER4E LTR ERV1 2 779 0 343 184 66 0 chr3 162310477 162310553 -65214025 - AluJ/FLAM SINE Alu -221 81 1 2363 76 7 10 chr3 162310557 162310726 -65213852 - AluY SINE Alu -10 301 132 2381 46 56 3 chr3 162310726 162311010 -65213568 - AluY SINE Alu -12 299 1 2363 76 7 10 chr3 162311010 162311142 -65213436 - AluY SINE Alu -179 132 1 2339 106 0 3 chr3 162311264 162311575 -65213003 - AluSq SINE Alu -3 310 1 337 70 0 0 chr3 162311593 162311636 -65212942 + AluJ/FLAM SINE Alu 26 68 -234 2083 121 28 0 chr3 162311746 162312036 -65212542 - AluSx SINE Alu -14 298 1 214 341 53 18 chr3 162312231 162312401 -65212177 - MER5A DNA MER1_type -13 176 1 2426 72 3 3 chr3 162312799 162313091 -65211487 - AluSp SINE Alu -20 293 2 219 221 142 9 chr3 162313787 162313900 -65210678 + MIR3 SINE MIR 27 154 -54 2222 116 3 0 chr3 162314411 162314704 -65209874 + AluSg SINE Alu 1 294 -16 1457 95 0 0 chr3 162315068 162315257 -65209321 - AluSg/x SINE Alu -2 308 120 182 217 87 0 chr3 162315704 162315750 -65208828 + L2 LINE L2 3221 3270 -2 2282 85 7 3 chr3 162315923 162316218 -65208360 + AluSx SINE Alu 1 296 -16 2177 39 108 7 chr3 162316485 162316764 -65207814 + AluY SINE Alu 1 307 -4 2031 150 7 0 chr3 162317470 162317770 -65206808 - AluJo SINE Alu -10 302 1 1464 30 0 0 chr3 162321295 162321463 -65203115 - L1PA3 LINE L1 0 6155 5988 2287 96 36 0 chr3 162321552 162321853 -65202725 + AluSp SINE Alu 1 312 -1 2102 112 54 0 chr3 162322022 162322318 -65202260 + AluSx SINE Alu 1 312 0 2127 139 0 7 chr3 162323476 162323771 -65200807 - AluSx SINE Alu -19 293 1 693 154 25 55 chr3 162323888 162323968 -65200610 + L1MB7 LINE L1 5254 5335 -843 2038 90 0 0 chr3 162323968 162324224 -65200354 + AluSx SINE Alu 36 291 -21 693 154 25 55 chr3 162324224 162324332 -65200246 + L1MB7 LINE L1 5335 5436 -742 1365 144 24 52 chr3 162324333 162324583 -65199995 + AluJo SINE Alu 40 282 -30 3532 160 20 44 chr3 162324615 162324702 -65199876 + L1MB7 LINE L1 5428 5516 -668 1876 142 18 3 chr3 162324702 162324984 -65199594 + AluSx SINE Alu 1 286 -26 3532 160 20 44 chr3 162324984 162325652 -65198926 + L1MB7 LINE L1 5516 6165 -19 971 271 71 15 chr3 162325703 162326109 -65198469 + L1ME3A LINE L1 5523 5951 -219 275 239 56 0 chr3 162326372 162326443 -65198135 - L2 LINE L2 -1485 1829 1755 2351 91 7 10 chr3 162326611 162326919 -65197659 - AluSq SINE Alu -6 307 1 2453 82 0 16 chr3 162328891 162329206 -65195372 - AluSg SINE Alu 0 310 1 183 227 61 30 chr3 162329362 162329428 -65195150 - MIR SINE MIR -98 164 97 872 150 15 0 chr3 162329468 162329601 -65194977 + FAM SINE Alu 14 148 -37 2084 107 17 14 chr3 162329618 162329907 -65194671 - AluSq SINE Alu -23 290 1 2299 105 0 3 chr3 162330018 162330323 -65194255 - AluSx SINE Alu -8 304 1 381 267 26 0 chr3 162330479 162330595 -65193983 - MER94 DNA DNA -14 120 2 215 209 48 105 chr3 162330638 162330743 -65193835 - MIR SINE MIR -57 205 107 1928 183 0 0 chr3 162332033 162332334 -65192244 + AluJb SINE Alu 1 301 -11 180 111 0 0 chr3 162332512 162332539 -65192039 - MIR SINE MIR -68 140 114 573 113 0 0 chr3 162332643 162332723 -65191855 + AluSp/q SINE Alu 211 290 -23 914 213 29 0 chr3 162333010 162333184 -65191394 + FRAM SINE Alu 1 175 -1 467 161 57 8 chr3 162333184 162333308 -65191270 + GA-rich Low_complexity Low_complexity 2 131 0 27 22 0 22 chr3 162333823 162333848 -65190730 + AT_rich Low_complexity Low_complexity 1 26 -18 2284 101 0 0 chr3 162333848 162334135 -65190443 - AluSg SINE Alu -23 287 1 27 22 0 22 chr3 162334135 162334154 -65190424 + AT_rich Low_complexity Low_complexity 26 44 0 180 0 0 0 chr3 162334581 162334601 -65189977 + (A)n Simple_repeat Simple_repeat 1 20 0 2105 111 0 0 chr3 162334601 162334880 -65189698 - AluSg SINE Alu -31 279 1 2403 88 0 3 chr3 162334954 162335259 -65189319 - AluSp SINE Alu -9 304 1 563 65 65 23 chr3 162335905 162336122 -65188456 + (TA)n Simple_repeat Simple_repeat 1 226 0 698 97 26 33 chr3 162336135 162336650 -65187928 + (TA)n Simple_repeat Simple_repeat 1 510 0 2165 106 3 7 chr3 162336692 162336993 -65187585 + AluSg1 SINE Alu 1 300 -9 895 276 18 4 chr3 162337814 162338042 -65186536 - MIR SINE MIR -29 233 3 2150 133 13 0 chr3 162338141 162338442 -65186136 + AluSx SINE Alu 1 305 -7 2037 73 3 92 chr3 162338602 162338930 -65185648 + AluSg SINE Alu 1 299 -11 1066 137 56 46 chr3 162338930 162339359 -65185219 + LTR54 LTR ERV1 13 505 -5 195 307 151 18 chr3 162339810 162340028 -65184550 + L2 LINE L2 2805 3051 -221 183 80 0 0 chr3 162340449 162340474 -65184104 + (TA)n Simple_repeat Simple_repeat 1 25 0 1659 105 152 8 chr3 162340474 162340731 -65183847 - AluSg1 SINE Alu -15 294 1 227 322 56 0 chr3 162341176 162341266 -65183312 + MIR3 SINE MIR 100 194 -14 183 256 0 0 chr3 162341233 162341272 -65183306 + L3b LINE CR1 1541 1579 -4 * 24 53 0 0 chr3 162341306 162341344 -65183234 + AT_rich Low_complexity Low_complexity 1 38 0 444 249 18 79 chr3 162341689 162341918 -65182660 + L1MEc LINE L1 1598 1812 -4584 286 215 77 0 chr3 162342114 162342179 -65182399 + MER5C DNA MER1_type 3 72 -252 2393 107 0 0 chr3 162342256 162342565 -65182013 - AluSg SINE Alu -1 309 1 2256 105 0 0 chr3 162342745 162343041 -65181537 + AluSx SINE Alu 1 296 -16 466 239 26 26 chr3 162343578 162343695 -65180883 - L2 LINE L2 0 3313 3197 3674 101 24 52 chr3 162343751 162344276 -65180302 + Tigger3b DNA MER2_type 2 540 -2488 2321 92 0 0 chr3 162344276 162344570 -65180008 - AluSx SINE Alu -18 294 1 3674 101 24 52 chr3 162344570 162344581 -65179997 + Tigger3b DNA MER2_type 540 550 -2478 1734 177 16 13 chr3 162344581 162344886 -65179692 - AluJb SINE Alu -6 306 1 3674 101 24 52 chr3 162344886 162345019 -65179559 + Tigger3b DNA MER2_type 550 653 -578 943 172 16 0 chr3 162345019 162345211 -65179367 - L1MA4 LINE L1 -79 6221 6027 1998 128 30 7 chr3 162345221 162345517 -65179061 - AluSx SINE Alu -9 303 1 3228 122 17 16 chr3 162345522 162346102 -65178476 + Tigger3b DNA MER2_type 652 1232 0 308 335 81 20 chr3 162346436 162346633 -65177945 - L2 LINE L2 -655 2659 2451 970 181 45 8 chr3 162346704 162346947 -65177631 + MER33 DNA MER1_type 3 254 -70 573 87 0 43 chr3 162347112 162347204 -65177374 - HY1 scRNA scRNA -24 88 1 268 267 124 29 chr3 162347576 162347681 -65176897 + MIR SINE MIR 88 202 -60 3733 147 57 36 chr3 162347982 162348036 -65176542 + L1MB3 LINE L1 5267 5318 -865 1884 130 60 3 chr3 162348036 162348320 -65176258 + AluSx SINE Alu 1 300 -12 3733 147 57 36 chr3 162348320 162348897 -65175681 + L1MB3 LINE L1 5318 5921 -262 2143 103 17 3 chr3 162348897 162349188 -65175390 + AluSc SINE Alu 1 295 -14 3733 147 57 36 chr3 162349188 162349364 -65175214 + L1MB3 LINE L1 5921 6092 -91 323 173 0 0 chr3 162349619 162349671 -65174907 - MER66B LTR ERV1 -140 346 295 1961 139 31 0 chr3 162349925 162350219 -65174359 + AluJo SINE Alu 1 303 -9 1161 176 53 13 chr3 162350282 162350584 -65173994 + L1M4 LINE L1 4978 5291 -855 775 181 7 7 chr3 162350625 162350774 -65173804 + L1M4 LINE L1 5491 5639 -539 1958 226 114 2 chr3 162351045 162351615 -65172963 - L1ME3A LINE L1 -180 5990 5357 860 251 57 44 chr3 162351607 162351938 -65172640 - L1ME3A LINE L1 -1794 4352 4027 * 243 0 0 0 chr3 162351938 162351965 -65172613 + (TG)n Simple_repeat Simple_repeat 2 28 0 1598 180 3 3 chr3 162351965 162352249 -65172329 - AluJb SINE Alu -28 284 1 860 251 57 44 chr3 162352249 162352394 -65172184 - L1ME3A LINE L1 -2118 4028 3869 2159 86 59 0 chr3 162352663 162352953 -65171625 - AluSc SINE Alu -2 307 1 2041 128 0 0 chr3 162353894 162354197 -65170381 - AluSx SINE Alu 0 303 1 1487 127 174 0 chr3 162354301 162354537 -65170041 - AluSx SINE Alu -35 277 1 2033 130 0 3 chr3 162354779 162355084 -65169494 + AluY SINE Alu 1 304 0 1975 124 35 0 chr3 162355480 162355762 -65168816 + AluSx SINE Alu 1 292 -20 2128 139 3 0 chr3 162355764 162356141 -65168437 + AluSx SINE Alu 1 378 0 227 279 16 101 chr3 162356831 162356960 -65167618 + MER5A DNA MER1_type 72 189 0 1369 109 0 0 chr3 162357053 162357237 -65167341 + AluSg/x SINE Alu 129 312 0 241 226 32 0 chr3 162358172 162358234 -65166344 + (TATG)n Simple_repeat Simple_repeat 4 67 0 24 32 0 0 chr3 162358718 162358749 -65165829 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 162358760 162358781 -65165797 + AT_rich Low_complexity Low_complexity 1 21 0 2141 118 7 0 chr3 162359618 162359915 -65164663 + AluSq SINE Alu 1 299 -14 380 263 166 5 chr3 162359915 162360120 -65164458 - L1ME4a LINE L1 -261 5860 5623 212 258 0 48 chr3 162361561 162361575 -65163003 + GA-rich Low_complexity Low_complexity 4 17 -45 2250 132 0 0 chr3 162361575 162361885 -65162693 + AluSx SINE Alu 1 310 -2 212 258 0 48 chr3 162361885 162361932 -65162646 + GA-rich Low_complexity Low_complexity 17 62 0 280 340 98 20 chr3 162361966 162362119 -65162459 + L2 LINE L2 3108 3272 0 1876 130 7 42 chr3 162362332 162362640 -65161938 + AluSx SINE Alu 1 297 -15 2326 138 27 62 chr3 162363052 162363502 -65161076 + Tigger2a DNA MER2_type 1 434 0 2531 54 0 0 chr3 162363746 162364043 -65160535 - AluY SINE Alu -14 297 1 280 167 0 0 chr3 162364133 162364181 -65160397 - MLT1A1 LTR MaLR 0 365 318 1561 193 22 20 chr3 162364185 162364545 -65160033 - MLT1A1 LTR MaLR -3 464 1 5121 206 97 35 chr3 162364552 162365864 -65158714 - MLT1A1-int LTR MaLR -7 1728 336 1097 161 143 105 chr3 162365880 162365999 -65158579 - AluJo SINE Alu -15 297 184 2371 102 0 0 chr3 162365999 162366303 -65158275 - AluSx SINE Alu -8 304 1 1097 161 143 105 chr3 162366303 162366469 -65158109 - AluJo SINE Alu -128 184 1 1897 162 15 0 chr3 162366470 162366810 -65157768 - MLT1A1-int LTR MaLR -1389 346 2 817 193 89 50 chr3 162366811 162367013 -65157565 - MLT1A1 LTR MaLR 0 365 156 2117 110 10 0 chr3 162367018 162367308 -65157270 - AluY SINE Alu -17 294 2 1020 98 8 0 chr3 162367308 162367440 -65157138 - AluSc SINE Alu -176 133 1 625 166 40 5 chr3 162367446 162367581 -65156997 - MLT1A1 LTR MaLR -216 149 10 1979 123 31 14 chr3 162369362 162369655 -65154923 - AluJb SINE Alu -12 300 3 1822 163 10 7 chr3 162370780 162371081 -65153497 - AluJo SINE Alu -10 302 1 1969 140 23 0 chr3 162371089 162371389 -65153189 - AluSx SINE Alu -5 307 1 3770 112 13 32 chr3 162371778 162372314 -65152264 - MER1A DNA MER1_type -1 526 1 820 241 11 0 chr3 162372382 162372556 -65152022 - MER5B DNA MER1_type 0 178 3 290 119 134 15 chr3 162373026 162373093 -65151485 - L1MCa LINE L1 -4362 2064 1990 201 265 20 0 chr3 162373117 162373166 -65151412 + (TATG)n Simple_repeat Simple_repeat 4 53 0 212 258 144 21 chr3 162373192 162373289 -65151289 - MIR SINE MIR -87 175 67 219 277 108 0 chr3 162373427 162373492 -65151086 + L2 LINE L2 3176 3247 -25 347 277 55 103 chr3 162373505 162373746 -65150832 - L3 LINE CR1 -518 1059 829 2303 96 6 10 chr3 162373746 162374059 -65150519 + AluSx SINE Alu 1 312 0 347 277 55 103 chr3 162374059 162374070 -65150508 - L3 LINE CR1 -748 829 819 370 328 73 35 chr3 162374133 162374615 -65149963 + L1ME4a LINE L1 4896 5395 -751 2451 89 0 0 chr3 162374645 162374947 -65149631 + AluSg SINE Alu 1 302 -8 6758 12 0 0 chr3 162374948 162375768 -65148810 + L1PA2 LINE L1 5183 6002 -153 2194 104 0 0 chr3 162375958 162376245 -65148333 - AluSg SINE Alu -23 287 1 428 321 98 18 chr3 162376505 162376831 -65147747 - L2 LINE L2 -210 3103 2764 335 303 76 42 chr3 162376850 162377114 -65147464 + L1M4 LINE L1 2686 2958 -3188 180 0 0 0 chr3 162377155 162377175 -65147403 + (TA)n Simple_repeat Simple_repeat 2 21 0 833 147 141 45 chr3 162377175 162377331 -65147247 - FRAM SINE Alu -11 165 1 1066 194 7 81 chr3 162377353 162377626 -65146952 + AluJb SINE Alu 1 253 -59 2059 83 0 0 chr3 162377776 162378030 -65146548 - AluY SINE Alu -14 297 44 601 106 12 0 chr3 162378030 162378115 -65146463 - AluY SINE Alu -223 87 2 3925 38 0 0 chr3 162378269 162378763 -65145815 + L1PA2 LINE L1 5711 6204 0 271 308 0 13 chr3 162378782 162378860 -65145718 + L1ME4a LINE L1 5446 5522 -2286 237 269 39 77 chr3 162378862 162378992 -65145586 - L2 LINE L2 -9 3304 3180 2482 90 0 0 chr3 162379112 162379423 -65145155 - AluY SINE Alu 0 311 1 345 288 180 17 chr3 162379518 162379751 -65144827 + L1ME4a LINE L1 5599 5869 -252 22 56 0 0 chr3 162379789 162379825 -65144753 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr3 162379892 162379927 -65144651 + AT_rich Low_complexity Low_complexity 1 35 0 2356 101 0 3 chr3 162379969 162380277 -65144301 + AluSg SINE Alu 2 308 -2 1618 157 24 27 chr3 162381261 162381555 -65143023 - AluJo SINE Alu -18 294 2 267 119 24 0 chr3 162381624 162381666 -65142912 + L1ME1 LINE L1 6120 6162 -4 2573 259 119 27 chr3 162381795 162382806 -65141772 + L2 LINE L2 1573 2676 -638 864 171 86 0 chr3 162382807 162382982 -65141596 + Charlie5 DNA MER1_type 5 194 -2418 867 155 17 155 chr3 162382986 162383123 -65141455 + Charlie5 DNA MER1_type 2352 2506 -118 2052 122 35 0 chr3 162383123 162383410 -65141168 - AluSg SINE Alu -12 298 2 2197 111 7 7 chr3 162383414 162383712 -65140866 - AluSx SINE Alu -14 298 1 867 155 17 155 chr3 162383712 162383866 -65140712 + Charlie5 DNA MER1_type 2509 2607 -17 1073 268 114 17 chr3 162383881 162384464 -65140114 + L2 LINE L2 2667 3313 0 2452 82 0 0 chr3 162384657 162384962 -65139616 - AluSg SINE Alu -5 305 1 2038 127 0 3 chr3 162385050 162385355 -65139223 - AluSq SINE Alu 0 304 1 1687 156 75 0 chr3 162385569 162385851 -65138727 - AluJo SINE Alu -7 305 3 2217 97 3 29 chr3 162386164 162386474 -65138104 - AluSq SINE Alu -11 302 1 2039 127 0 26 chr3 162387364 162387671 -65136907 + AluSg SINE Alu 1 299 -11 1809 189 0 3 chr3 162387812 162388108 -65136470 + AluJo SINE Alu 1 295 -17 273 313 121 0 chr3 162389314 162389413 -65135165 + MER5A DNA MER1_type 55 165 -24 2050 95 7 4 chr3 162389950 162390224 -65134354 + AluSg SINE Alu 1 275 -35 2054 125 0 20 chr3 162390341 162390644 -65133934 - AluSx SINE Alu -15 297 1 1763 139 39 4 chr3 162390967 162391247 -65133331 - AluJb SINE Alu -22 290 1 28 0 0 47 chr3 162391870 162391890 -65132688 + AT_rich Low_complexity Low_complexity 1 20 -21 2374 97 0 0 chr3 162391890 162392190 -65132388 + AluSq SINE Alu 1 300 -13 28 0 0 47 chr3 162392190 162392212 -65132366 + AT_rich Low_complexity Low_complexity 20 41 0 1218 99 0 0 chr3 162392970 162393131 -65131447 + AluSp SINE Alu 137 297 -16 604 111 10 40 chr3 162393184 162393269 -65131309 + AluY SINE Alu 2 85 -226 1465 92 0 0 chr3 162393269 162393454 -65131124 + AluY SINE Alu 44 228 -83 604 111 10 40 chr3 162393454 162393467 -65131111 + AluY SINE Alu 85 97 -214 201 154 0 0 chr3 162393467 162393506 -65131072 + A-rich Low_complexity Low_complexity 1 39 0 28 48 0 0 chr3 162394436 162394478 -65130100 + AT_rich Low_complexity Low_complexity 1 42 0 276 53 0 0 chr3 162394633 162394671 -65129907 + (TCTCCC)n Simple_repeat Simple_repeat 1 38 0 22 56 0 0 chr3 162396014 162396050 -65128528 + AT_rich Low_complexity Low_complexity 1 36 0 297 29 0 0 chr3 162396061 162396095 -65128483 - U2 snRNA snRNA -154 34 1 187 218 55 55 chr3 162396673 162396728 -65127850 + L3 LINE CR1 1512 1566 -11 429 267 0 0 chr3 162396928 162397014 -65127564 - L2 LINE L2 -11 3302 3217 290 257 109 40 chr3 162397160 162397261 -65127317 + L2 LINE L2 3201 3308 -5 2795 13 0 0 chr3 162397889 162398193 -65126385 - AluYa5 SINE Alu -6 305 2 306 179 71 0 chr3 162398422 162398478 -65126100 - L2 LINE L2 0 3272 3213 435 323 64 52 chr3 162399188 162399233 -65125345 + L2 LINE L2 2071 2114 -1200 1653 169 29 35 chr3 162399233 162399547 -65125031 - AluJo SINE Alu 0 312 1 435 323 64 52 chr3 162399547 162399845 -65124733 + L2 LINE L2 2114 2418 -896 1043 170 4 115 chr3 162399992 162400066 -65124512 - MER3 DNA MER1_type 0 209 128 1978 118 10 7 chr3 162400066 162400354 -65124224 + AluSx SINE Alu 1 289 -23 1043 170 4 115 chr3 162400354 162400514 -65124064 - MER3 DNA MER1_type -81 128 1 287 203 31 0 chr3 162400896 162400960 -65123618 - MLT1K LTR MaLR -18 570 505 2458 75 0 10 chr3 162401243 162401551 -65123027 - AluSp SINE Alu -8 305 1 2226 76 38 7 chr3 162401870 162402158 -65122420 - AluY SINE Alu -14 297 1 256 279 0 15 chr3 162402305 162402373 -65122205 + MER94 DNA DNA 6 72 -62 242 309 56 71 chr3 162402674 162402750 -65121828 - MIR SINE MIR -128 134 59 2086 131 60 34 chr3 162402750 162403101 -65121477 + THE1B LTR MaLR 1 360 -4 242 309 56 71 chr3 162403101 162403150 -65121428 - MIR SINE MIR -203 59 11 248 355 29 83 chr3 162403470 162403783 -65120795 + L2 LINE L2 2977 3272 0 867 266 67 50 chr3 162404333 162404709 -65119869 - L2 LINE L2 -1 3312 2931 274 299 102 0 chr3 162404950 162405117 -65119461 - L1ME LINE L1 -276 5845 5662 2402 97 0 0 chr3 162405255 162405565 -65119013 + AluY SINE Alu 1 310 -1 505 291 115 50 chr3 162406106 162406522 -65118056 - L1ME LINE L1 -386 5735 5293 388 163 0 76 chr3 162406525 162406617 -65117961 - L1MC3 LINE L1 -256 7529 7445 745 153 0 24 chr3 162406617 162406741 -65117837 - AluJb SINE Alu -8 304 184 2154 231 95 21 chr3 162406759 162407352 -65117226 + L1MCc LINE L1 655 1365 -5058 225 0 0 0 chr3 162407352 162407377 -65117201 + (CA)n Simple_repeat Simple_repeat 2 26 0 2154 231 95 21 chr3 162407377 162407470 -65117108 + L1MCc LINE L1 1365 1450 -4973 1423 189 20 51 chr3 162407553 162407667 -65116911 + AluJo SINE Alu 6 122 -190 2357 87 3 10 chr3 162407667 162407967 -65116611 - AluSp SINE Alu -15 298 1 1423 189 20 51 chr3 162407967 162408148 -65116430 + AluJo SINE Alu 122 292 -20 779 252 9 10 chr3 162408212 162408392 -65116186 + MER77 LTR ERV1 407 601 -4 1323 208 51 19 chr3 162408442 162408536 -65116042 - L1ME LINE L1 -890 5256 5166 2872 107 3 0 chr3 162408536 162408899 -65115679 + THE1B LTR MaLR 1 364 0 1323 208 51 19 chr3 162408899 162409117 -65115461 - L1ME LINE L1 -980 5166 4934 1523 184 7 18 chr3 162409218 162409495 -65115083 + AluSx SINE Alu 39 312 0 1853 169 10 0 chr3 162409623 162409913 -65114665 - AluJb SINE Alu -19 293 1 455 267 68 7 chr3 162409943 162410089 -65114489 + MIR SINE MIR 90 244 -18 2862 208 66 20 chr3 162410220 162411034 -65113544 + L1M4 LINE L1 3689 4540 -1606 2292 82 26 10 chr3 162411034 162411338 -65113240 + AluSx SINE Alu 1 309 -3 2335 84 0 16 chr3 162411461 162411769 -65112809 + AluY SINE Alu 1 303 -8 956 138 0 0 chr3 162411771 162411901 -65112677 + AluSg/x SINE Alu 157 286 -24 1878 207 35 42 chr3 162411912 162412136 -65112442 + L1M4 LINE L1 4528 4752 -1394 1212 134 22 78 chr3 162412136 162412305 -65112273 - MER20 DNA MER1_type 0 219 65 1972 112 61 0 chr3 162412305 162412583 -65111995 + AluSx SINE Alu 1 295 -17 1212 134 22 78 chr3 162412583 162412645 -65111933 - MER20 DNA MER1_type -154 65 1 1878 207 35 42 chr3 162412645 162412891 -65111687 + L1M4 LINE L1 4752 4996 -1150 1787 168 38 0 chr3 162412891 162413183 -65111395 + AluJo SINE Alu 1 303 -9 1878 207 35 42 chr3 162413183 162413233 -65111345 + L1M4 LINE L1 4996 5045 -1101 2186 79 13 26 chr3 162413303 162413608 -65110970 + AluY SINE Alu 1 301 -10 338 169 14 14 chr3 162413644 162413715 -65110863 - FLAM_A SINE Alu 0 133 63 2269 98 0 13 chr3 162413839 162414144 -65110434 + AluSq SINE Alu 1 301 -12 2823 97 26 46 chr3 162414244 162414697 -65109881 - LTR56 LTR ERV1 -1 444 1 226 158 35 35 chr3 162415539 162415596 -65108982 - L1MC5 LINE L1 -36 7925 7869 2188 110 0 32 chr3 162415958 162416268 -65108310 + AluSx SINE Alu 1 300 -12 2355 90 0 19 chr3 162416421 162416731 -65107847 + AluSq SINE Alu 1 304 -9 315 293 246 16 chr3 162416930 162417121 -65107457 - MIR SINE MIR 0 262 28 1131 73 0 7 chr3 162417210 162417347 -65107231 + AluSx SINE Alu 1 136 -177 2414 85 0 7 chr3 162417347 162417654 -65106924 + AluSc SINE Alu 1 305 -4 1339 111 21 0 chr3 162418340 162418529 -65106049 + AluSx SINE Alu 118 310 0 2615 34 0 3 chr3 162418534 162418832 -65105746 + AluY SINE Alu 1 297 -14 2343 76 3 7 chr3 162418840 162419143 -65105435 + AluSp SINE Alu 2 303 -10 327 104 0 0 chr3 162419231 162419279 -65105299 + (GAAAA)n Simple_repeat Simple_repeat 2 49 0 2229 99 0 26 chr3 162419283 162419585 -65104993 + AluSc SINE Alu 1 294 -15 291 319 82 33 chr3 162419940 162420122 -65104456 - L2 LINE L2 -1425 1889 1699 441 200 122 0 chr3 162420132 162420247 -65104331 - L1MB7 LINE L1 -19 6165 6037 944 249 90 3 chr3 162420267 162420568 -65104010 + L1M3 LINE L1 4504 4830 -1316 2216 115 0 3 chr3 162420568 162420863 -65103715 + AluSx SINE Alu 1 294 -18 846 169 39 0 chr3 162420874 162421004 -65103574 + AluJo SINE Alu 2 136 -176 2202 117 0 0 chr3 162421012 162421311 -65103267 + AluSx SINE Alu 1 299 -13 1956 225 38 16 chr3 162421316 162421823 -65102755 + L1M3 LINE L1 4799 5316 -830 251 227 0 0 chr3 162422056 162422100 -65102478 + AluJ/monomer SINE Alu 1 44 -256 1692 176 3 42 chr3 162422324 162422636 -65101942 + AluJb SINE Alu 1 300 -12 2408 94 3 3 chr3 162422642 162422951 -65101627 + AluSx SINE Alu 3 311 -1 375 208 26 0 chr3 162422952 162423029 -65101549 - L1ME LINE L1 -5986 84 6 286 309 92 13 chr3 162423035 162423190 -65101388 + L1M3 LINE L1 5667 5844 -336 19544 128 32 9 chr3 162423478 162425817 -65098761 + L1MA3 LINE L1 9 2433 -5132 1632 106 0 0 chr3 162425817 162426034 -65098544 + AluSg/x SINE Alu 85 301 -11 19544 128 32 9 chr3 162426034 162426678 -65097900 + L1MA3 LINE L1 2433 3061 -4504 2194 111 0 10 chr3 162426680 162426977 -65097601 - AluSx SINE Alu -18 294 1 16183 157 30 13 chr3 162426977 162428662 -65095916 + L1MA3 LINE L1 3317 4971 -2753 3859 122 2 15 chr3 162428662 162429196 -65095382 + MER1A DNA MER1_type 1 527 0 16183 157 30 13 chr3 162429196 162431629 -65092949 + L1MA3 LINE L1 4971 7518 -206 2152 124 20 0 chr3 162431629 162431927 -65092651 - AluSx SINE Alu -8 304 1 16183 157 30 13 chr3 162431927 162432138 -65092440 + L1MA3 LINE L1 7518 7724 0 2983 198 122 43 chr3 162432892 162433653 -65090925 - MER21B LTR ERV1 0 863 43 472 183 0 0 chr3 162433656 162433727 -65090851 - MER21B LTR ERV1 -774 89 19 279 218 58 23 chr3 162433725 162433812 -65090766 - MER21B LTR ERV1 -757 106 17 * 366 267 13 0 chr3 162433831 162433906 -65090672 - MER21B LTR ERV1 -773 90 15 1157 118 232 6 chr3 162433906 162434186 -65090392 - MER7A DNA MER2_type -1 336 1 2023 144 3 7 chr3 162434208 162434514 -65090064 - AluJb SINE Alu -7 305 1 753 245 117 38 chr3 162434611 162434901 -65089677 + L2 LINE L2 3000 3312 -1 1753 134 102 7 chr3 162435031 162435314 -65089264 - AluSg SINE Alu 0 310 1 1057 200 0 0 chr3 162435321 162435486 -65089092 - FRAM SINE Alu 0 166 2 2209 103 7 3 chr3 162435548 162435840 -65088738 - AluSx SINE Alu -18 294 2 573 233 42 5 chr3 162435938 162436131 -65088447 + L1ME LINE L1 817 1016 -5054 495 191 191 9 chr3 162436894 162436999 -65087579 + FLAM_A SINE Alu 1 124 -9 2190 135 0 0 chr3 162437262 162437573 -65087005 - AluSx SINE Alu -1 311 1 1412 124 0 40 chr3 162438073 162438298 -65086280 + AluSg/x SINE Alu 87 302 -10 1797 113 181 31 chr3 162438352 162438645 -65085933 - MER1B DNA MER1_type 0 337 1 823 181 5 52 chr3 162438749 162438959 -65085619 - L1MC5 LINE L1 -48 7913 7714 2012 146 28 0 chr3 162439044 162439331 -65085247 - AluJb SINE Alu -17 295 1 1010 113 0 14 chr3 162440034 162440175 -65084403 + AluJb SINE Alu 156 294 -18 241 255 191 21 chr3 162440458 162440552 -65084026 + MIR SINE MIR 33 142 -120 954 77 8 0 chr3 162440652 162440769 -65083809 - AluSp SINE Alu -195 118 1 667 252 84 13 chr3 162440795 162441033 -65083545 - L2 LINE L2 -1106 2208 1954 682 229 34 23 chr3 162441199 162441374 -65083204 - MLT1K LTR MaLR -8 580 404 819 182 15 0 chr3 162441432 162441564 -65083014 - AluJo SINE Alu -177 135 2 1965 89 7 26 chr3 162442098 162442368 -65082210 + AluSq SINE Alu 1 265 -48 226 205 0 0 chr3 162442376 162442415 -65082163 - AluJ/monomer SINE Alu -262 40 2 1525 169 29 7 chr3 162442501 162442780 -65081798 - AluJo SINE Alu -27 285 1 346 275 233 0 chr3 162442798 162443034 -65081544 - L1ME LINE L1 -320 5801 5511 329 277 95 22 chr3 162443039 162443176 -65081402 - L1ME LINE L1 -636 5485 5339 240 205 39 39 chr3 162443590 162443668 -65080910 + L1MA9 LINE L1 6205 6282 -30 2310 109 3 0 chr3 162444857 162445161 -65079417 + AluSq SINE Alu 1 305 -8 1285 169 16 28 chr3 162445243 162445492 -65079086 + L1MA9 LINE L1 6058 6303 -9 2331 100 0 0 chr3 162445542 162445841 -65078737 + AluSq SINE Alu 1 299 -14 609 246 123 30 chr3 162446198 162446401 -65078177 - MIR SINE MIR -8 254 33 770 208 0 21 chr3 162446684 162446828 -65077750 - AluJb SINE Alu -18 294 154 268 130 19 19 chr3 162446950 162447004 -65077574 + AluSp/q SINE Alu 248 301 -2 646 338 41 0 chr3 162447004 162447297 -65077281 + L2 LINE L2 2228 2532 -782 2372 85 0 0 chr3 162447663 162447958 -65076620 - AluSq SINE Alu -18 295 1 21 0 0 0 chr3 162448642 162448663 -65075915 + AT_rich Low_complexity Low_complexity 1 21 0 679 243 55 15 chr3 162449165 162449367 -65075211 - MIR SINE MIR 0 262 53 4010 181 61 111 chr3 162449396 162450240 -65074338 + L1MC4 LINE L1 6800 7558 -484 2290 98 0 22 chr3 162450240 162450557 -65074021 + AluSx SINE Alu 2 311 -1 4010 181 61 111 chr3 162450557 162451019 -65073559 + L1MC4 LINE L1 7558 8041 -1 964 86 93 62 chr3 162451172 162451334 -65073244 - L1PA8 LINE L1 -1 6171 6005 307 196 127 86 chr3 162451784 162452029 -65072549 + L1M4 LINE L1 2755 3009 -3137 411 277 160 0 chr3 162452204 162452323 -65072255 + MIR3 SINE MIR 4 141 -67 320 291 129 50 chr3 162452556 162452797 -65071781 + MLT1J LTR MaLR 25 284 -227 439 213 169 22 chr3 162453107 162453243 -65071335 + MIR SINE MIR 90 245 -17 234 315 45 34 chr3 162453450 162453539 -65071039 - L2 LINE L2 0 3272 3183 362 287 37 0 chr3 162454328 162454464 -65070114 - L1ME4a LINE L1 -22 6099 5959 2415 93 0 7 chr3 162454505 162454815 -65069763 - AluSg SINE Alu -2 308 1 548 303 66 5 chr3 162454875 162455086 -65069492 - MIR SINE MIR -36 226 3 22 94 0 0 chr3 162455109 162455173 -65069405 + AT_rich Low_complexity Low_complexity 1 64 0 1270 132 32 23 chr3 162455338 162455493 -65069085 + MER65C LTR ERV1 233 392 -69 2300 107 0 0 chr3 162455493 162455793 -65068785 - AluSx SINE Alu -12 300 1 1270 132 32 23 chr3 162455793 162455857 -65068721 + MER65C LTR ERV1 392 454 -7 366 234 11 32 chr3 162455867 162455961 -65068617 - L1MC4a LINE L1 -1981 5827 5736 738 276 102 82 chr3 162456003 162456482 -65068096 + L2 LINE L2 2779 3268 -4 2084 119 10 0 chr3 162456617 162456912 -65067666 - AluSx SINE Alu -14 298 1 2598 58 0 3 chr3 162457078 162457388 -65067190 - AluY SINE Alu -2 309 1 2085 98 24 7 chr3 162457770 162458057 -65066521 - AluSc SINE Alu -17 292 1 748 170 7 64 chr3 162458596 162458737 -65065841 - FLAM_C SINE Alu 0 133 1 2155 116 7 0 chr3 162458978 162459272 -65065306 + AluSx SINE Alu 2 297 -15 1786 138 0 0 chr3 162459619 162459873 -65064705 + AluSx SINE Alu 55 308 -4 36 53 0 0 chr3 162460383 162460440 -65064138 + AT_rich Low_complexity Low_complexity 1 57 0 2138 125 0 22 chr3 162461691 162462002 -65062576 + AluSx SINE Alu 1 304 -8 2336 75 7 3 chr3 162462006 162462301 -65062277 + AluY SINE Alu 1 296 -15 2244 108 3 0 chr3 162462316 162462612 -65061966 + AluSq SINE Alu 1 297 -16 1842 115 17 35 chr3 162462612 162462899 -65061679 + MSTC LTR MaLR 147 428 0 1231 251 121 13 chr3 162462901 162463363 -65061215 - L1MC4 LINE L1 -249 7793 7282 2168 99 17 0 chr3 162463383 162463677 -65060901 + AluSp SINE Alu 2 300 -13 1932 121 23 46 chr3 162463677 162463982 -65060596 + AluSq SINE Alu 1 298 -15 2050 114 7 10 chr3 162463992 162464282 -65060296 + AluSg SINE Alu 1 289 -21 535 158 0 0 chr3 162464304 162464380 -65060198 + AluJ/FLAM SINE Alu 2 77 -235 1307 191 118 4 chr3 162464505 162464767 -65059811 + AluJb SINE Alu 1 292 -20 2492 64 0 3 chr3 162466056 162466351 -65058227 + AluSc SINE Alu 1 294 -15 221 182 78 65 chr3 162467089 162467166 -65057412 - L2 LINE L2 -9 3263 3186 182 250 47 31 chr3 162467258 162467322 -65057256 + MIR3 SINE MIR 141 205 -3 593 204 48 59 chr3 162468221 162468407 -65056171 + MLT1E2 LTR MaLR 1 184 -442 735 196 172 34 chr3 162468475 162468684 -65055894 + MLT1E2 LTR MaLR 387 624 -2 338 182 39 13 chr3 162468763 162468840 -65055738 - MER5A DNA MER1_type -77 112 34 547 135 58 87 chr3 162469313 162469417 -65055161 + AluJb SINE Alu 129 229 -83 2004 122 7 43 chr3 162469443 162469747 -65054831 + AluSx SINE Alu 1 293 -19 180 0 0 0 chr3 162469750 162469770 -65054808 + (TA)n Simple_repeat Simple_repeat 2 21 0 2207 98 3 10 chr3 162469802 162470098 -65054480 + AluSx SINE Alu 1 294 -18 433 200 56 0 chr3 162470102 162470192 -65054386 - L2 LINE L2 -22 3291 3197 1098 90 0 0 chr3 162470480 162470614 -65053964 + AluSg SINE Alu 3 136 -174 1844 113 0 4 chr3 162470615 162470863 -65053715 + AluSg SINE Alu 58 304 -6 2196 75 48 10 chr3 162470870 162471165 -65053413 + AluY SINE Alu 1 306 -5 2022 115 0 0 chr3 162471206 162471467 -65053111 + AluSx SINE Alu 1 261 -51 1832 133 0 28 chr3 162471468 162471806 -65052772 + AluJo SINE Alu 6 335 0 642 139 0 19 chr3 162472317 162472425 -65052153 - FLAM_A SINE Alu -17 125 20 2466 73 3 0 chr3 162472518 162472821 -65051757 - AluY SINE Alu -7 304 1 2277 132 68 5 chr3 162472888 162473283 -65051295 + MSTB LTR MaLR 1 420 -6 2714 180 38 15 chr3 162473417 162474102 -65050476 + L1ME1 LINE L1 5186 5894 -272 289 333 157 9 chr3 162474441 162474549 -65050029 + MIR3 SINE MIR 38 161 -47 556 282 66 44 chr3 162475109 162475336 -65049242 - MIR SINE MIR -13 249 18 440 272 22 78 chr3 162475636 162475655 -65048923 - L2 LINE L2 -3 3310 3291 2537 88 0 0 chr3 162475655 162475963 -65048615 - AluSg SINE Alu -2 308 1 440 272 22 78 chr3 162475963 162476123 -65048455 - L2 LINE L2 -22 3291 3141 512 122 33 0 chr3 162476184 162476274 -65048304 - MER53 DNA DNA -1 188 96 1337 197 36 26 chr3 162476416 162476720 -65047858 + MLT1F1 LTR MaLR 249 555 -12 504 273 88 21 chr3 162476732 162476926 -65047652 - LTR16B LTR ERVL -257 207 1 24 53 0 0 chr3 162477838 162477876 -65046702 + AT_rich Low_complexity Low_complexity 1 38 0 2663 227 46 43 chr3 162477999 162478796 -65045782 - MER21B LTR ERV1 -51 812 13 2106 126 0 7 chr3 162479292 162479593 -65044985 - AluSx SINE Alu -13 299 1 512 193 0 0 chr3 162479935 162480018 -65044560 - AluJ/FLAM SINE Alu -228 84 2 258 228 53 0 chr3 162480159 162480216 -65044362 - L2 LINE L2 -2 3270 3211 31 26 0 0 chr3 162480289 162480327 -65044251 + AT_rich Low_complexity Low_complexity 1 38 0 2161 228 21 18 chr3 162481085 162481598 -65042980 + MLT2B3 LTR ERVL 1 515 -39 423 0 0 0 chr3 162481603 162481650 -65042928 + (CA)n Simple_repeat Simple_repeat 2 48 0 2173 159 55 24 chr3 162481651 162482071 -65042507 + Tigger2a DNA MER2_type 2 434 0 303 190 13 38 chr3 162482072 162482151 -65042427 + L1MC4 LINE L1 6624 6700 -1342 244 88 0 0 chr3 162482173 162482207 -65042371 + MLT2B3 LTR ERVL 482 515 0 2157 207 119 11 chr3 162482213 162482783 -65041795 + L1ME3A LINE L1 5496 6127 -43 320 246 135 90 chr3 162482827 162483160 -65041418 - L1ME4a LINE L1 -6 6115 5768 265 193 28 73 chr3 162483197 162483306 -65041272 - L1ME4a LINE L1 -392 5729 5626 1754 158 11 0 chr3 162483650 162483935 -65040643 - AluSx SINE Alu 0 312 25 851 216 27 5 chr3 162483948 162484133 -65040445 + MER5A DNA MER1_type 1 189 0 1687 148 11 32 chr3 162484863 162485146 -65039432 - AluJb SINE Alu -18 294 18 300 27 0 0 chr3 162485198 162485235 -65039343 + (TG)n Simple_repeat Simple_repeat 2 38 0 1821 135 0 4 chr3 162485235 162485494 -65039084 - AluSx SINE Alu -28 284 27 2286 114 3 6 chr3 162486023 162486373 -65038205 - MER47A DNA MER2_type -16 350 2 3662 226 58 32 chr3 162486523 162487428 -65037150 + L1M4 LINE L1 3797 4751 -1395 1744 189 10 13 chr3 162487428 162487729 -65036849 + AluJo SINE Alu 1 300 -12 3662 226 58 32 chr3 162487729 162488175 -65036403 + L1M4 LINE L1 4751 5184 -962 1786 155 28 14 chr3 162488275 162488566 -65036012 - AluJb SINE Alu -17 295 1 1303 239 47 76 chr3 162488606 162488619 -65035959 - L1MC4a LINE L1 -1908 5900 5888 2246 113 0 0 chr3 162488619 162488919 -65035659 - AluSg SINE Alu -8 302 3 1303 239 47 76 chr3 162488919 162489306 -65035272 - L1MC4a LINE L1 -1920 5888 5491 2376 90 0 7 chr3 162489306 162489616 -65034962 - AluSq SINE Alu -5 308 1 2293 107 0 3 chr3 162489616 162489914 -65034664 - AluSx SINE Alu -15 297 1 1303 239 47 76 chr3 162489914 162489991 -65034587 - L1MC4a LINE L1 -2316 5492 5414 1541 162 40 44 chr3 162489991 162490287 -65034291 - AluJo SINE Alu -17 295 1 1303 239 47 76 chr3 162490287 162490408 -65034170 - L1MC4a LINE L1 -2394 5414 5317 742 349 149 29 chr3 162490713 162490869 -65033709 - L2 LINE L2 -337 2977 2841 2121 122 0 3 chr3 162490869 162491165 -65033413 - AluSx SINE Alu -17 295 1 742 349 149 29 chr3 162491165 162491842 -65032736 - L2 LINE L2 -473 2841 2044 626 244 105 52 chr3 162491875 162492104 -65032474 - MIR SINE MIR -19 243 3 2891 164 31 30 chr3 162492179 162492813 -65031765 + L1MC3 LINE L1 6686 7320 -465 1118 165 6 16 chr3 162492813 162492995 -65031583 - AluJo SINE Alu -47 265 86 370 218 23 0 chr3 162493000 162493087 -65031491 + L1MC3 LINE L1 7667 7755 -30 654 289 70 44 chr3 162493204 162493591 -65030987 - L1M4 LINE L1 -3462 2684 2288 2425 90 0 3 chr3 162493620 162493932 -65030646 - AluSq SINE Alu -2 311 1 818 125 15 0 chr3 162493932 162494068 -65030510 - L1MB3 LINE L1 -41 6142 6005 1053 62 0 7 chr3 162494068 162494213 -65030365 + L1PA4 LINE L1 6012 6155 0 2176 84 0 14 chr3 162494457 162494772 -65029806 - AluSc SINE Alu 0 311 1 410 188 94 21 chr3 162495069 162495094 -65029484 - MIR SINE MIR -79 183 161 2397 58 0 3 chr3 162495094 162495389 -65029189 + AluY SINE Alu 1 294 -17 410 188 94 21 chr3 162495389 162495459 -65029119 - MIR SINE MIR -101 161 81 1309 173 0 27 chr3 162495631 162495851 -65028727 + AluSx SINE Alu 54 267 -45 1472 164 69 25 chr3 162495876 162496150 -65028428 + AluJb SINE Alu 1 286 -26 257 296 56 14 chr3 162496380 162496593 -65027985 - L1M4 LINE L1 -1506 4640 4419 * 1843 180 98 36 chr3 162496577 162496621 -65027957 - L1MB7 LINE L1 0 6184 6144 2023 131 0 29 chr3 162496621 162496927 -65027651 - AluY SINE Alu -14 297 1 1843 180 98 36 chr3 162496927 162497360 -65027218 - L1MB7 LINE L1 -40 6144 5672 2220 127 7 0 chr3 162497360 162497659 -65026919 - AluSx SINE Alu -11 301 1 1843 180 98 36 chr3 162497659 162497681 -65026897 - L1MB7 LINE L1 -512 5672 5653 1257 230 36 33 chr3 162498013 162498317 -65026261 + AluJo SINE Alu 1 305 -7 633 263 193 22 chr3 162498409 162498766 -65025812 + HAL1 LINE L1 535 952 -1555 245 250 22 33 chr3 162498768 162498860 -65025718 + GA-rich Low_complexity Low_complexity 2 92 0 21 0 0 0 chr3 162498977 162498998 -65025580 + AT_rich Low_complexity Low_complexity 1 21 0 250 260 123 39 chr3 162499016 162499241 -65025337 + L1MEd LINE L1 11 320 -5799 254 364 34 0 chr3 162499769 162499857 -65024721 - L2 LINE L2 -54 3218 3128 243 125 0 0 chr3 162500075 162500115 -65024463 + MER116 DNA Mariner 2 41 -39 195 189 0 0 chr3 162500170 162500207 -65024371 + MIR SINE MIR 226 262 0 357 264 0 0 chr3 162500672 162500744 -65023834 - L2 LINE L2 0 3272 3201 183 322 68 25 chr3 162500770 162500888 -65023690 + L2 LINE L2 2943 3065 -248 278 317 70 91 chr3 162501156 162501296 -65023282 - L2 LINE L2 -81 3232 3090 2473 76 3 0 chr3 162501296 162501598 -65022980 + AluSx SINE Alu 1 303 -9 278 317 70 91 chr3 162501598 162501933 -65022645 - L2 LINE L2 -223 3090 2771 2184 126 0 0 chr3 162501933 162502227 -65022351 + AluSx SINE Alu 1 294 -18 278 317 70 91 chr3 162502227 162502286 -65022292 - L2 LINE L2 -542 2771 2712 777 154 0 39 chr3 162502839 162502969 -65021609 - FLAM_A SINE Alu -8 125 1 474 115 0 0 chr3 162503287 162503365 -65021213 + AluSc SINE Alu 231 308 -1 292 255 31 20 chr3 162503920 162504018 -65020560 - L1MC/D LINE L1 -2029 5779 5681 225 94 0 0 chr3 162504019 162504051 -65020527 + (TG)n Simple_repeat Simple_repeat 1 32 0 279 229 69 14 chr3 162504244 162504310 -65020268 - L1MC/D LINE L1 -2382 5426 5365 1591 206 0 32 chr3 162504310 162504620 -65019958 - AluJo SINE Alu -12 300 1 279 229 69 14 chr3 162504620 162504697 -65019881 - L1MC/D LINE L1 -2443 5365 5275 835 315 109 42 chr3 162504730 162505805 -65018773 - L1MC/D LINE L1 -907 5239 4062 1947 129 7 26 chr3 162505966 162506101 -65018477 + AluSx SINE Alu 1 137 -175 2186 92 0 20 chr3 162506101 162506404 -65018174 + AluSc SINE Alu 2 298 -11 1947 129 7 26 chr3 162506404 162506570 -65018008 + AluSx SINE Alu 137 296 -16 343 275 128 0 chr3 162506570 162506679 -65017899 - L1ME3A LINE L1 -240 5930 5808 690 287 81 31 chr3 162506702 162507086 -65017492 + LTR16A LTR ERVL 19 443 -14 908 84 0 8 chr3 162507685 162507804 -65016774 - AluSp SINE Alu -182 131 14 753 180 25 100 chr3 162508262 162508501 -65016077 + L1MD2 LINE L1 6089 6309 -50 1838 171 10 3 chr3 162508501 162508799 -65015779 - AluJo SINE Alu -12 300 1 798 258 67 24 chr3 162508799 162509097 -65015481 + MLT1C LTR MaLR 157 467 0 2183 113 3 0 chr3 162509366 162509657 -65014921 - AluSx SINE Alu -20 292 1 2292 92 0 3 chr3 162510251 162510546 -65014032 + AluSx SINE Alu 1 294 -18 27 0 0 0 chr3 162511034 162511061 -65013517 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr3 162511176 162511197 -65013381 + AT_rich Low_complexity Low_complexity 1 21 0 678 323 34 27 chr3 162511198 162511315 -65013263 + HAL1b LINE L1 98 213 -1135 1926 147 7 7 chr3 162511315 162511608 -65012970 + AluSx SINE Alu 1 293 -19 678 323 34 27 chr3 162511608 162511930 -65012648 + HAL1b LINE L1 213 540 -808 321 219 0 0 chr3 162511936 162512009 -65012569 + L1M3 LINE L1 5551 5623 -560 1009 199 0 0 chr3 162512032 162512203 -65012375 + FAM SINE Alu 1 171 -4 2358 97 0 3 chr3 162512205 162512514 -65012064 + AluSg SINE Alu 1 308 -2 2431 88 0 0 chr3 162512517 162512823 -65011755 + AluY SINE Alu 1 306 -5 209 250 0 0 chr3 162513649 162513693 -65010885 - L2 LINE L2 0 3272 3229 1749 154 8 8 chr3 162513825 162514092 -65010486 - AluSx SINE Alu -45 267 1 895 117 0 0 chr3 162514228 162514356 -65010222 + AluSg/x SINE Alu 183 310 -2 1349 96 0 0 chr3 162514491 162514668 -65009910 + AluSg/x SINE Alu 129 305 -5 995 202 6 0 chr3 162515389 162515562 -65009016 - FAM SINE Alu 0 175 2 31561 79 15 11 chr3 162515701 162521792 -65002786 - L1PA6 LINE L1 -1 6153 12 2053 139 7 0 chr3 162521834 162522128 -65002450 + AluSx SINE Alu 1 296 -16 8334 128 5 9 chr3 162522207 162523245 -65001333 + L1MA1 LINE L1 3958 4984 -1318 2216 116 0 0 chr3 162523245 162523537 -65001041 + AluSx SINE Alu 1 292 -20 8334 128 5 9 chr3 162523537 162524382 -65000196 + L1MA1 LINE L1 4984 5831 -471 2084 141 14 0 chr3 162524383 162524674 -64999904 + AluSx SINE Alu 1 295 -17 1949 131 7 0 chr3 162524807 162525126 -64999452 - AluJb SINE Alu 0 326 6 202 306 44 69 chr3 162525158 162525318 -64999260 - L2 LINE L2 -609 2705 2550 278 380 58 14 chr3 162525537 162525745 -64998833 + L3 LINE CR1 98 314 -1263 561 147 49 0 chr3 162525745 162525847 -64998731 + U6 snRNA snRNA 1 107 0 722 126 170 69 chr3 162525872 162526057 -64998521 + AluJo SINE Alu 125 312 0 549 306 98 29 chr3 162526142 162526619 -64997959 + L3 LINE CR1 430 939 -638 684 312 23 0 chr3 162526653 162526871 -64997707 - MIR SINE MIR -34 228 6 224 301 152 50 chr3 162526855 162527244 -64997334 + L3 LINE CR1 922 1409 -168 * 815 146 0 0 chr3 162527247 162527370 -64997208 + FLAM_A SINE Alu 13 135 -7 22 0 0 0 chr3 162529701 162529723 -64994855 + GC_rich Low_complexity Low_complexity 1 22 0 635 263 70 57 chr3 162530583 162530611 -64993967 - L2 LINE L2 -14 3299 3273 1623 124 109 0 chr3 162530611 162530877 -64993701 - AluJb SINE Alu -17 295 1 635 263 70 57 chr3 162530877 162531149 -64993429 - L2 LINE L2 -40 3273 2995 4280 225 94 30 chr3 162581214 162581414 -64943164 + L1ME LINE L1 3545 3731 -2433 2154 111 0 7 chr3 162581414 162581720 -64942858 + AluSc SINE Alu 1 304 -5 4280 225 94 30 chr3 162581720 162583621 -64940957 + L1ME LINE L1 3731 5783 -381 7914 120 26 109 chr3 162583621 162584579 -64939999 + Tigger4(Zombi) DNA MER2_type 1 1038 -1693 2011 122 7 0 chr3 162584579 162584857 -64939721 + AluSx SINE Alu 1 280 -32 180 0 0 0 chr3 162584857 162584877 -64939701 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7914 120 26 109 chr3 162584877 162585405 -64939173 + Tigger4(Zombi) DNA MER2_type 1037 1355 -1376 1506 183 47 4 chr3 162585405 162585679 -64938899 + AluJo SINE Alu 13 298 -14 7914 120 26 109 chr3 162585679 162585745 -64938833 + Tigger4(Zombi) DNA MER2_type 1355 1425 -1306 1718 168 13 3 chr3 162585745 162586055 -64938523 - L1 LINE L1 -1045 5101 4789 305 306 113 34 chr3 162586498 162586763 -64937815 - L1 LINE L1 -1310 4836 4551 21 36 0 0 chr3 162587951 162587979 -64936599 + AT_rich Low_complexity Low_complexity 1 28 0 897 188 62 5 chr3 162589528 162589720 -64934858 + MER105 DNA DNA 1 203 -1 2307 112 0 0 chr3 162589725 162590030 -64934548 + AluSq SINE Alu 1 305 -8 191 317 144 42 chr3 162590312 162590479 -64934099 - L2 LINE L2 -1360 1954 1771 1947 109 20 17 chr3 162590481 162590775 -64933803 - AluSg SINE Alu -15 295 1 1600 129 106 0 chr3 162591348 162591626 -64932952 - AluSg SINE Alu 0 305 1 518 299 89 54 chr3 162592357 162592671 -64931907 - HAL1b LINE L1 -682 666 342 1455 242 121 20 chr3 162592694 162593423 -64931155 - L1 LINE L1 -994 5152 4296 417 254 43 7 chr3 162593485 162593623 -64930955 - L1MC5 LINE L1 -542 7419 7277 2105 134 0 7 chr3 162593623 162593922 -64930656 + AluJo SINE Alu 1 297 -15 1569 173 29 14 chr3 162594052 162594330 -64930248 - AluJo SINE Alu -30 282 1 1236 151 137 4 chr3 162594335 162594606 -64929972 - L1MA4 LINE L1 -7 6293 5987 278 325 46 13 chr3 162595854 162596005 -64928573 + L2 LINE L2 3158 3313 0 334 343 107 45 chr3 162596178 162596467 -64928111 - L2 LINE L2 -69 3203 2897 294 330 230 24 chr3 162596460 162596751 -64927827 - L2 LINE L2 -1215 2099 1749 * 940 333 76 60 chr3 162597598 162598163 -64926415 - L2 LINE L2 -1764 1550 995 2104 123 7 0 chr3 162598163 162598456 -64926122 + AluSx SINE Alu 1 295 -17 940 333 76 60 chr3 162598456 162598645 -64925933 - L2 LINE L2 -2319 995 778 7699 19 5 0 chr3 162598645 162599962 -64924616 + L1PA2 LINE L1 4835 6155 0 940 333 76 60 chr3 162599962 162600084 -64924494 - L2 LINE L2 -2536 778 659 239 0 32 0 chr3 162600514 162600545 -64924033 + (TA)n Simple_repeat Simple_repeat 2 33 0 1438 215 3 20 chr3 162600545 162600843 -64923735 - AluJo SINE Alu -19 293 1 10567 127 38 22 chr3 162601000 162602470 -64922108 + Tigger1 DNA MER2_type 1 1504 -914 2171 101 0 0 chr3 162602470 162602748 -64921830 + AluSx SINE Alu 1 278 -34 10567 127 38 22 chr3 162602748 162603019 -64921559 + Tigger1 DNA MER2_type 1504 1769 -649 1119 153 19 38 chr3 162603136 162603345 -64921233 - AluSx SINE Alu -107 205 1 2533 147 35 7 chr3 162603345 162603760 -64920818 + Tigger1 DNA MER2_type 1797 2226 -192 2096 161 63 7 chr3 162603760 162604171 -64920407 - Tigger2a DNA MER2_type 0 434 1 2533 147 35 7 chr3 162604171 162604190 -64920388 + Tigger1 DNA MER2_type 2226 2243 -175 2135 181 7 39 chr3 162604204 162604613 -64919965 - MSTB1 LTR MaLR -36 396 1 784 139 152 6 chr3 162604613 162604770 -64919808 + Tigger1 DNA MER2_type 2239 2418 0 2555 225 64 50 chr3 162604804 162605644 -64918934 - L1ME3A LINE L1 -38 6132 5281 1129 274 47 14 chr3 162605660 162606090 -64918488 - L1ME3A LINE L1 -2060 4086 3643 943 199 44 0 chr3 162606605 162606786 -64917792 - MER58A DNA MER1_type -4 220 32 2871 164 27 8 chr3 162606813 162607339 -64917239 - L1MB5 LINE L1 -189 5985 5450 2422 74 0 7 chr3 162607974 162608283 -64916295 - AluY SINE Alu -4 307 1 840 234 100 17 chr3 162608493 162608732 -64915846 + MIR SINE MIR 1 259 -3 21 0 0 0 chr3 162609045 162609066 -64915512 + AT_rich Low_complexity Low_complexity 1 21 0 3814 243 50 65 chr3 162609227 162610406 -64914172 + L1MC4 LINE L1 6388 7537 -505 1882 179 7 0 chr3 162610406 162610708 -64913870 + AluSx SINE Alu 1 304 -8 3814 243 50 65 chr3 162610708 162611138 -64913440 + L1MC4 LINE L1 7537 7972 -70 617 167 0 0 chr3 162611142 162611244 -64913334 - AluSg/x SINE Alu 0 309 208 230 158 18 0 chr3 162611251 162611308 -64913270 + L1MD3 LINE L1 7938 7995 0 1365 197 41 41 chr3 162611318 162611612 -64912966 + AluJb SINE Alu 1 294 -18 688 228 41 14 chr3 162611614 162611759 -64912819 + AluJo/FRAM SINE Alu 133 281 -31 306 53 0 0 chr3 162611759 162611797 -64912781 + 5S rRNA rRNA 5 42 -79 2086 217 88 56 chr3 162612787 162612987 -64911591 - HAL1 LINE L1 -744 1763 1571 2066 98 30 34 chr3 162612987 162613284 -64911294 - AluSx SINE Alu -16 296 1 2086 217 88 56 chr3 162613284 162613848 -64910730 - HAL1 LINE L1 -936 1571 975 359 357 45 0 chr3 162614642 162614815 -64909763 - MER20B DNA MER1_type -5 214 32 267 223 29 137 chr3 162615246 162615385 -64909193 - L2 LINE L2 0 3313 3190 279 133 0 0 chr3 162616270 162616315 -64908263 + (TG)n Simple_repeat Simple_repeat 1 45 0 1263 157 143 91 chr3 162617055 162617494 -64907084 - MLT1C LTR MaLR -2 465 4 3786 241 107 54 chr3 162617508 162618262 -64906316 - HAL1 LINE L1 -137 2370 1657 2059 109 36 10 chr3 162618262 162618566 -64906012 - AluSx SINE Alu 0 312 1 3786 241 107 54 chr3 162618566 162619509 -64905069 - HAL1 LINE L1 -850 1657 583 1157 257 51 42 chr3 162619530 162619939 -64904639 + LTR16A LTR ERVL 16 428 -22 832 279 103 82 chr3 162619973 162620525 -64904053 - HAL1 LINE L1 -1943 564 1 858 173 56 6 chr3 162621123 162621354 -64903224 - AluJb SINE Alu -12 300 18 261 0 0 0 chr3 162621367 162621396 -64903182 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr3 162622030 162622058 -64902520 + AT_rich Low_complexity Low_complexity 1 28 0 2378 88 3 3 chr3 162622200 162622507 -64902071 - AluSq SINE Alu -6 307 1 2223 114 0 10 chr3 162622599 162622906 -64901672 - AluSx SINE Alu -8 304 1 679 258 49 57 chr3 162623157 162623401 -64901177 + MIR SINE MIR 6 247 -15 26 0 0 0 chr3 162623411 162623437 -64901141 + AT_rich Low_complexity Low_complexity 1 26 0 195 214 29 0 chr3 162623805 162623822 -64900756 + (TA)n Simple_repeat Simple_repeat 2 17 -90 2300 85 0 0 chr3 162623822 162624105 -64900473 + AluSx SINE Alu 1 283 -29 195 214 29 0 chr3 162624105 162624190 -64900388 + (TA)n Simple_repeat Simple_repeat 17 107 0 1777 153 67 0 chr3 162624444 162624726 -64899852 + AluJo SINE Alu 1 301 -11 398 150 176 129 chr3 162624858 162624960 -64899618 - MER5A DNA MER1_type 0 189 64 2233 115 3 0 chr3 162624960 162625265 -64899313 - AluSp SINE Alu -7 306 1 398 150 176 129 chr3 162625265 162625316 -64899262 - MER5A DNA MER1_type -125 64 17 517 255 141 28 chr3 162625587 162625842 -64898736 + L2 LINE L2 3030 3313 0 261 250 129 21 chr3 162626117 162626233 -64898345 - MIR SINE MIR -65 143 42 536 234 89 34 chr3 162626459 162626694 -64897884 + L1ME3A LINE L1 5918 6165 -5 21 0 0 0 chr3 162626698 162626719 -64897859 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 162626776 162626798 -64897780 + AT_rich Low_complexity Low_complexity 1 22 0 33 25 0 0 chr3 162626852 162626892 -64897686 + AT_rich Low_complexity Low_complexity 1 40 0 21 36 0 0 chr3 162627047 162627075 -64897503 + AT_rich Low_complexity Low_complexity 1 28 0 362 194 0 0 chr3 162627749 162627821 -64896757 + L1MB2 LINE L1 6064 6135 -36 377 261 225 0 chr3 162628076 162628244 -64896334 - MIR SINE MIR -24 238 34 938 183 30 26 chr3 162628353 162628583 -64895995 + L1ME1 LINE L1 4529 4759 -1387 347 281 7 0 chr3 162628588 162628723 -64895855 + (CTAAA)n Simple_repeat Simple_repeat 5 140 0 609 206 32 13 chr3 162628734 162628889 -64895689 + L1ME1 LINE L1 4762 4919 -1227 634 203 80 16 chr3 162628984 162629171 -64895407 + L1ME1 LINE L1 4906 5104 -1042 1719 173 19 26 chr3 162629196 162629508 -64895070 + AluJb SINE Alu 1 310 -2 306 222 17 26 chr3 162629508 162629625 -64894953 + GA-rich Low_complexity Low_complexity 1 116 0 222 118 0 0 chr3 162629655 162629689 -64894889 + (TGGGGG)n Simple_repeat Simple_repeat 3 36 0 2150 94 18 67 chr3 162629704 162629838 -64894740 + AluSx SINE Alu 1 140 -172 2251 109 0 0 chr3 162629838 162630121 -64894457 + AluSg SINE Alu 4 286 -24 2150 94 18 67 chr3 162630121 162630314 -64894264 + AluSx SINE Alu 140 312 0 2467 208 78 66 chr3 162630320 162631359 -64893219 + L1ME1 LINE L1 5114 6160 -6 2363 75 0 32 chr3 162631380 162631688 -64892890 - AluY SINE Alu -13 298 1 619 276 125 6 chr3 162631720 162632031 -64892547 + L1ME3A LINE L1 5610 5957 -213 549 319 38 88 chr3 162632506 162632823 -64891755 - L2 LINE L2 -37 3235 2935 469 278 116 12 chr3 162632798 162633057 -64891521 - L2 LINE L2 -1318 1996 1711 * 377 231 77 0 chr3 162633190 162633294 -64891284 + MIR SINE MIR 80 191 -71 23 0 0 0 chr3 162633387 162633410 -64891168 + AT_rich Low_complexity Low_complexity 1 23 0 1983 142 0 22 chr3 162634204 162634520 -64890058 - AluSx SINE Alu 0 312 4 1675 185 7 17 chr3 162634544 162634841 -64889737 + AluJo SINE Alu 1 294 -18 300 257 66 66 chr3 162635895 162636031 -64888547 - L1ME4a LINE L1 -18 6103 5968 1202 201 45 30 chr3 162636359 162636627 -64887951 + AluJo SINE Alu 5 276 -36 27 29 0 0 chr3 162636896 162636930 -64887648 + AT_rich Low_complexity Low_complexity 1 34 0 4697 127 12 57 chr3 162637024 162637441 -64887137 - L1PA16 LINE L1 -9 6157 5798 1621 131 108 4 chr3 162637441 162637700 -64886878 + AluSx SINE Alu 1 286 -26 4697 127 12 57 chr3 162637700 162638164 -64886414 - L1PA16 LINE L1 -368 5798 5315 31 0 0 0 chr3 162638164 162638195 -64886383 + AT_rich Low_complexity Low_complexity 1 31 0 423 73 0 0 chr3 162638205 162638260 -64886318 - U6 snRNA snRNA -51 56 2 2551 192 32 41 chr3 162638260 162638972 -64885606 - L1PA16 LINE L1 -813 5333 4628 2030 140 0 13 chr3 162639328 162639628 -64884950 + AluSx SINE Alu 1 296 -16 229 253 0 25 chr3 162639711 162639790 -64884788 + A-rich Low_complexity Low_complexity 2 78 0 21 36 0 0 chr3 162640352 162640380 -64884198 + AT_rich Low_complexity Low_complexity 1 28 0 38176 40 27 2 chr3 162640531 162645492 -64879086 - L1P LINE L1 -1059 5087 1 22 0 0 0 chr3 162645666 162645688 -64878890 + AT_rich Low_complexity Low_complexity 1 22 0 2333 79 3 0 chr3 162645698 162645988 -64878590 + AluY SINE Alu 1 291 -20 1711 164 16 26 chr3 162645994 162646298 -64878280 + AluJb SINE Alu 1 301 -11 297 276 155 26 chr3 162646303 162646419 -64878159 - MIR3 SINE MIR -63 145 15 3081 169 26 48 chr3 162646471 162647097 -64877481 - LTR9 LTR ERV1 0 612 1 1211 136 5 0 chr3 162647097 162647295 -64877283 - HUERS-P3 LTR ERV1 0 8919 8721 991 111 12 12 chr3 162647451 162647623 -64876955 - HUERS-P3 LTR ERV1 -2456 2559 2388 14435 123 29 15 chr3 162647630 162650055 -64874523 - HUERS-P3 LTR ERV1 -472 6946 4489 3696 124 11 25 chr3 162650057 162650664 -64873914 - LTR9 LTR ERV1 0 612 14 1154 171 123 71 chr3 162650664 162651085 -64873493 + LTR7 LTR ERV1 1 443 -7 7930 112 11 55 chr3 162651110 162652569 -64872009 - HUERS-P3 LTR ERV1 -3028 4390 1276 2475 152 33 2 chr3 162652569 162652997 -64871581 + LTR8 LTR ERV1 1 441 -250 11813 154 52 31 chr3 162652997 162653347 -64871231 - HUERS-P3 LTR ERV1 -4776 2642 2301 185 0 40 0 chr3 162653347 162653372 -64871206 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 11813 154 52 31 chr3 162653372 162654496 -64870082 - HUERS-P3 LTR ERV1 -5117 2301 1100 1814 138 3 66 chr3 162654496 162654648 -64869930 + AluSq SINE Alu 1 124 -189 2373 80 0 7 chr3 162654648 162654948 -64869630 + AluY SINE Alu 1 298 -13 1814 138 3 66 chr3 162654948 162655115 -64869463 + AluSq SINE Alu 124 300 -13 11813 154 52 31 chr3 162655115 162655956 -64868622 - HUERS-P3 LTR ERV1 -6318 1100 278 255 182 0 18 chr3 162655947 162656002 -64868576 - HUERS-P3 LTR ERV1 -7547 1372 1319 * 356 202 43 21 chr3 162656010 162656104 -64868474 - HUERS-P3 LTR ERV1 -7285 133 38 2795 148 71 50 chr3 162656148 162656742 -64867836 - LTR9 LTR ERV1 0 612 7 1489 152 12 4 chr3 162657095 162657338 -64867240 + AluSx SINE Alu 50 294 -18 1600 186 35 54 chr3 162658118 162658490 -64866088 - MLT1A1 LTR MaLR 0 365 1 2264 82 4 0 chr3 162659048 162659370 -64865208 - AluSc SINE Alu 0 323 1 252 100 0 0 chr3 162659427 162659467 -64865111 + (CA)n Simple_repeat Simple_repeat 2 41 0 290 329 66 47 chr3 162659702 162659915 -64864663 + L2 LINE L2 2455 2671 -643 454 336 60 32 chr3 162659930 162660147 -64864431 - MIR SINE MIR -38 224 2 361 143 0 0 chr3 162660605 162660668 -64863910 + AluSp/q SINE Alu 240 302 -1 451 229 0 0 chr3 162660681 162660799 -64863779 + L1 LINE L1 4160 4277 -1869 3184 231 62 106 chr3 162661161 162662440 -64862138 + L2 LINE L2 1756 2977 -337 319 257 40 0 chr3 162662452 162662526 -64862052 + MIR3 SINE MIR 106 182 -26 197 426 49 0 chr3 162662589 162662772 -64861806 + L2 LINE L2 2779 2970 -344 31 44 0 0 chr3 162663208 162663253 -64861325 + AT_rich Low_complexity Low_complexity 1 45 0 195 244 0 0 chr3 162663311 162663352 -64861226 + L2 LINE L2 3220 3260 -12 1824 153 3 10 chr3 162663488 162663789 -64860789 + AluJb SINE Alu 1 299 -13 964 123 0 7 chr3 162663802 162663940 -64860638 + AluJo SINE Alu 1 137 -175 21 0 0 0 chr3 162664391 162664412 -64860166 + AT_rich Low_complexity Low_complexity 1 21 0 395 224 189 26 chr3 162664707 162664844 -64859734 + HAL1b LINE L1 978 1091 -257 1938 155 0 3 chr3 162664844 162665140 -64859438 + AluSx SINE Alu 1 295 -17 395 224 189 26 chr3 162665140 162665230 -64859348 + HAL1b LINE L1 1091 1242 -106 26 30 0 0 chr3 162665301 162665334 -64859244 + AT_rich Low_complexity Low_complexity 1 33 0 23 68 0 0 chr3 162665352 162665396 -64859182 + AT_rich Low_complexity Low_complexity 1 44 0 3936 196 45 83 chr3 162665551 162665888 -64858690 - L1MB7 LINE L1 0 6184 5836 1906 155 20 12 chr3 162665888 162665961 -64858617 - MER2 DNA MER2_type 0 344 273 2119 129 3 0 chr3 162665961 162666256 -64858322 + AluJb SINE Alu 1 296 -16 1906 155 20 12 chr3 162666256 162666523 -64858055 - MER2 DNA MER2_type -71 273 1 3936 196 45 83 chr3 162666523 162667518 -64857060 - L1MB7 LINE L1 -348 5836 4874 595 204 0 0 chr3 162667518 162667621 -64856957 + FLAM_A SINE Alu 13 115 -27 3936 196 45 83 chr3 162667621 162668173 -64856405 - L1MB7 LINE L1 -1310 4874 4303 2222 133 40 2 chr3 162668388 162668810 -64855768 - L1 LINE L1 -1482 6083 5646 1556 165 35 22 chr3 162668841 162669365 -64855213 - L1 LINE L1 -3581 3984 3459 16592 128 51 72 chr3 162669406 162670494 -64854084 - L1 LINE L1 -4001 3564 2455 2294 83 3 3 chr3 162670494 162670782 -64853796 - AluSp SINE Alu -25 288 1 16592 128 51 72 chr3 162670782 162671031 -64853547 - L1 LINE L1 -5110 2455 2202 752 240 35 0 chr3 162671031 162671202 -64853376 - AluJ SINE Alu -2 310 134 16592 128 51 72 chr3 162671202 162672893 -64851685 - L1 LINE L1 -5363 2202 432 822 178 7 0 chr3 162672896 162673048 -64851530 - L1M4 LINE L1 -6382 160 8 1098 236 77 53 chr3 162673366 162673743 -64850835 - L2 LINE L2 -1 3312 2927 428 267 47 23 chr3 162674175 162674347 -64850231 + CT-rich Low_complexity Low_complexity 1 176 0 221 81 0 27 chr3 162674386 162674423 -64850155 + (TTCC)n Simple_repeat Simple_repeat 3 38 0 471 267 53 8 chr3 162675583 162675714 -64848864 + MIR SINE MIR 28 164 -98 2244 91 7 17 chr3 162675716 162676014 -64848564 + AluSx SINE Alu 3 297 -15 315 0 0 0 chr3 162676052 162676087 -64848491 + (TG)n Simple_repeat Simple_repeat 2 36 0 337 169 20 54 chr3 162676087 162676235 -64848343 + (CATATA)n Simple_repeat Simple_repeat 4 146 0 32 67 0 0 chr3 162676453 162676513 -64848065 + AT_rich Low_complexity Low_complexity 1 60 0 461 147 73 113 chr3 162676655 162676805 -64847773 - Charlie4 DNA MER1_type -1 1960 1817 1079 229 60 46 chr3 162676826 162677268 -64847310 - MLT1A2 LTR MaLR -2 462 4 631 144 29 0 chr3 162677271 162677375 -64847203 - Charlie4 DNA MER1_type -1818 143 37 801 178 0 0 chr3 162678588 162678717 -64845861 - AluJ SINE Alu -173 129 1 1881 153 10 3 chr3 162678782 162679077 -64845501 + AluJb SINE Alu 1 297 -15 209 340 111 6 chr3 162679235 162679397 -64845181 + MIR SINE MIR 84 262 0 196 304 0 0 chr3 162679505 162679551 -64845027 + L2 LINE L2 3210 3255 -17 2117 94 7 36 chr3 162679737 162680044 -64844534 + AluSq SINE Alu 1 298 -15 273 304 28 57 chr3 162680263 162680391 -64844187 + MIR3 SINE MIR 25 157 -51 312 313 82 37 chr3 162681034 162681168 -64843410 + MIR SINE MIR 2 141 -67 482 159 150 0 chr3 162681681 162681794 -64842784 - Charlie1 DNA MER1_type -1 2760 2631 1530 171 25 21 chr3 162681797 162682078 -64842500 + AluJo SINE Alu 1 282 -30 567 0 0 0 chr3 162682084 162682147 -64842431 + (TA)n Simple_repeat Simple_repeat 2 64 0 12193 165 35 46 chr3 162682203 162682648 -64841930 + L1PB4 LINE L1 2636 3084 -3216 2773 141 44 27 chr3 162682648 162683168 -64841410 + L1PB4 LINE L1 5616 6149 -7 12193 165 35 46 chr3 162683168 162685356 -64839222 + L1PB4 LINE L1 3084 5277 -1023 345 115 33 16 chr3 162685356 162685416 -64839162 + L1PA16 LINE L1 6095 6156 -10 12193 165 35 46 chr3 162685416 162685928 -64838650 + L1PB4 LINE L1 5277 5793 -507 6585 38 1 12 chr3 162685943 162686765 -64837813 + L1PA4 LINE L1 5343 6155 0 926 154 27 21 chr3 162686778 162686966 -64837612 + L1MA4 LINE L1 6105 6293 -7 21 71 0 0 chr3 162686974 162687016 -64837562 + AT_rich Low_complexity Low_complexity 1 42 0 572 152 125 18 chr3 162687040 162687152 -64837426 - FLAM_C SINE Alu -16 127 4 579 202 107 28 chr3 162687191 162687369 -64837209 - Charlie1 DNA MER1_type -296 2465 2274 1194 105 0 0 chr3 162687369 162687522 -64837056 + AluSx SINE Alu 1 153 -159 282 147 0 168 chr3 162687563 162687658 -64836920 - Charlie1 DNA MER1_type -473 2288 2210 1256 198 13 93 chr3 162687732 162687839 -64836739 + AluJb SINE Alu 2 116 -196 2322 84 0 0 chr3 162687839 162688126 -64836452 - AluSg SINE Alu -21 289 3 1256 198 13 93 chr3 162688126 162688153 -64836425 + AluJb SINE Alu 116 144 -168 1880 130 41 3 chr3 162688153 162688446 -64836132 - AluSx SINE Alu -8 304 1 1256 198 13 93 chr3 162688446 162688623 -64835955 + AluJb SINE Alu 144 289 -23 415 227 45 0 chr3 162688633 162688721 -64835857 - Charlie1 DNA MER1_type -2669 92 1 4962 170 54 83 chr3 162688777 162689430 -64835148 + L1PB4 LINE L1 4047 4718 -1438 2298 102 0 25 chr3 162689430 162689745 -64834833 + AluSx SINE Alu 1 307 -5 4962 170 54 83 chr3 162689745 162690896 -64833682 + L1PB4 LINE L1 4718 5765 -391 327 85 0 0 chr3 162690896 162690943 -64833635 + (TG)n Simple_repeat Simple_repeat 2 48 0 4962 170 54 83 chr3 162690943 162691312 -64833266 + L1PB4 LINE L1 5765 6143 -13 22 80 0 0 chr3 162691351 162691401 -64833177 + AT_rich Low_complexity Low_complexity 1 50 0 910 195 77 0 chr3 162691493 162691662 -64832916 - MER58A DNA MER1_type 0 224 43 609 257 227 48 chr3 162693072 162693403 -64831175 + HAL1 LINE L1 266 655 -1852 1303 266 121 69 chr3 162693482 162693937 -64830641 + HAL1 LINE L1 1155 1585 -922 714 219 0 0 chr3 162693937 162694065 -64830513 - FLAM_C SINE Alu -5 128 1 1303 266 121 69 chr3 162694065 162694415 -64830163 + HAL1 LINE L1 1585 1915 -592 1523 112 9 22 chr3 162694415 162694639 -64829939 + AluJb SINE Alu 86 306 -6 1303 266 121 69 chr3 162694639 162694988 -64829590 + HAL1 LINE L1 1915 2370 -137 2192 93 13 26 chr3 162695036 162695347 -64829231 + AluSx SINE Alu 1 307 -5 190 274 0 20 chr3 162695387 162695438 -64829140 - MIR SINE MIR -155 107 58 312 192 0 0 chr3 162695439 162695501 -64829077 + Alu SINE Alu 2 48 -254 1235 199 4 4 chr3 162695614 162695840 -64828738 + AluJb SINE Alu 1 226 -86 290 143 0 0 chr3 162695971 162696013 -64828565 - Alu SINE Alu -266 42 1 739 206 22 0 chr3 162696703 162696839 -64827739 - AluJb SINE Alu -37 275 137 328 111 0 5 chr3 162696840 162696900 -64827678 - Alu SINE Alu -264 44 1 315 291 106 62 chr3 162697142 162697321 -64827257 + MER5A DNA MER1_type 3 189 0 25 0 0 0 chr3 162697567 162697592 -64826986 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr3 162698043 162698071 -64826507 + AT_rich Low_complexity Low_complexity 1 28 0 202 391 78 0 chr3 162698099 162698227 -64826351 - L2 LINE L2 0 3313 3176 192 40 0 0 chr3 162698322 162698347 -64826231 + (TTA)n Simple_repeat Simple_repeat 2 26 0 1411 184 46 18 chr3 162698349 162698631 -64825947 - AluJb SINE Alu -22 290 1 411 110 0 14 chr3 162699297 162699370 -64825208 + L1MA10 LINE L1 6262 6333 -1 24 0 0 0 chr3 162700286 162700310 -64824268 + AT_rich Low_complexity Low_complexity 1 24 0 2047 121 24 0 chr3 162701119 162701409 -64823169 + AluSx SINE Alu 1 297 -15 1025 130 75 0 chr3 162704023 162704184 -64820394 - AluSg/x SINE Alu -11 299 127 2561 98 0 0 chr3 162704188 162704545 -64820033 - L1PB1 LINE L1 0 6151 5795 233 276 0 46 chr3 162704576 162704663 -64819915 - L1MC4 LINE L1 -1339 6703 6621 * 14035 176 44 12 chr3 162704654 162704715 -64819863 - L1P5 LINE L1 -359 6508 6450 2322 102 0 3 chr3 162704715 162705019 -64819559 - AluSq SINE Alu -8 305 3 14035 176 44 12 chr3 162705019 162705900 -64818678 - L1P5 LINE L1 -417 6450 5599 8106 73 11 1 chr3 162705900 162706960 -64817618 + MER11C LTR ERVK 1 1071 0 14035 176 44 12 chr3 162706960 162707693 -64816885 - L1P5 LINE L1 -1268 5599 4891 2084 110 7 36 chr3 162707693 162708002 -64816576 - AluSc SINE Alu -9 300 1 14035 176 44 12 chr3 162708002 162708838 -64815740 - L1P5 LINE L1 -1976 4891 4083 201 39 0 0 chr3 162708838 162708864 -64815714 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 14035 176 44 12 chr3 162708864 162709994 -64814584 - L1P5 LINE L1 -2784 4083 2704 722 186 0 0 chr3 162710124 162710242 -64814336 + FLAM_C SINE Alu 1 118 -25 21 0 0 0 chr3 162710242 162710263 -64814315 + AT_rich Low_complexity Low_complexity 1 21 0 962 150 0 0 chr3 162710299 162710439 -64814139 + AluJb SINE Alu 129 268 -44 2780 110 42 0 chr3 162710470 162710897 -64813681 + L1PA16 LINE L1 5713 6157 -9 189 161 18 107 chr3 162711710 162711766 -64812812 + L3b LINE CR1 1244 1294 -289 326 244 39 13 chr3 162712018 162712096 -64812482 - MIR SINE MIR -26 236 157 2043 112 3 54 chr3 162712169 162712347 -64812231 - AluSx SINE Alu -15 297 140 2408 104 0 0 chr3 162712347 162712655 -64811923 - AluSc SINE Alu -1 308 1 2043 112 3 54 chr3 162712655 162712789 -64811789 - AluSx SINE Alu -172 140 1 740 143 0 0 chr3 162713579 162713684 -64810894 - AluJb SINE Alu -207 105 1 203 234 168 0 chr3 162713710 162713817 -64810761 - L2 LINE L2 -602 2712 2588 7780 21 2 0 chr3 162714346 162715546 -64809032 - L1PA3 LINE L1 0 6155 4955 2416 113 2 17 chr3 162715546 162715965 -64808613 + L1P5 LINE L1 5210 5622 -529 284 194 0 104 chr3 162716081 162716148 -64808430 - L1M4 LINE L1 -2018 4128 4069 6783 129 24 11 chr3 162716158 162717060 -64807518 - L1MA3 LINE L1 0 6305 5367 2276 87 27 0 chr3 162717060 162717360 -64807218 - AluSq SINE Alu -5 308 1 6783 129 24 11 chr3 162717360 162718025 -64806553 - L1MA3 LINE L1 -938 5367 4712 1363 235 35 6 chr3 162718198 162718699 -64805879 - MLT1H1 LTR MaLR -8 547 1 1692 156 39 26 chr3 162919227 162919535 -64605043 - AluJb SINE Alu 0 312 1 2256 105 0 0 chr3 162921414 162921710 -64602868 + AluSc SINE Alu 1 296 -13 255 343 27 41 chr3 162923686 162923832 -64600746 - MER5A DNA MER1_type -25 164 21 1203 157 117 111 chr3 162923898 162924267 -64600311 - MLT1A2 LTR MaLR 0 374 4 1514 191 19 67 chr3 162925594 162925955 -64598623 - MLT2C1 LTR ERVL -48 349 6 1024 185 120 3 chr3 162925967 162926404 -64598174 - ERVL-C1 LTR ERVL -16 5748 5234 * 1662 123 16 4 chr3 162926401 162926652 -64597926 - ERVL-C1 LTR ERVL -1133 4631 4378 1448 168 11 21 chr3 162926652 162926937 -64597641 + AluSc SINE Alu 2 283 -26 2171 194 35 24 chr3 162929447 162929462 -64595116 + MLT1C LTR MaLR 3 16 -451 2272 125 141 16 chr3 162929462 162929839 -64594739 - MSTB LTR MaLR 0 426 3 2171 194 35 24 chr3 162929839 162930282 -64594296 + MLT1C LTR MaLR 16 466 -1 1892 228 101 15 chr3 162931214 162931688 -64592890 + MLT2B2 LTR ERVL 1 515 0 417 263 64 68 chr3 162932022 162932273 -64592305 - MLT1J LTR MaLR -30 481 232 223 407 17 0 chr3 162932432 162932550 -64592028 - L2 LINE L2 -257 3015 2896 262 203 102 0 chr3 162932841 162932900 -64591678 - L2 LINE L2 -282 2990 2926 333 206 76 11 chr3 162933432 162933524 -64591054 - MER112 DNA MER1_type -7 253 156 239 319 64 11 chr3 162933529 162933704 -64590874 - MLT1J2 LTR MaLR -8 424 263 1592 108 0 9 chr3 162934031 162934243 -64590335 + AluSq SINE Alu 1 210 -103 254 194 90 0 chr3 162934704 162934771 -64589807 + L1MC4a LINE L1 5562 5634 -487 380 241 0 11 chr3 162934890 162934977 -64589601 + L1MC4a LINE L1 5834 5919 -1889 395 290 107 43 chr3 162935360 162935660 -64588918 + L1MC/D LINE L1 4723 5041 -1105 310 217 81 99 chr3 162935733 162935894 -64588684 + L1MC/D LINE L1 5174 5331 -815 268 349 41 0 chr3 162935894 162936040 -64588538 + L1MC/D LINE L1 5582 5733 -2075 190 399 84 0 chr3 162936810 162937013 -64587565 - L2 LINE L2 -655 2659 2440 1475 144 30 8 chr3 162937113 162937377 -64587201 + AluY SINE Alu 31 300 -11 6282 197 43 30 chr3 162937382 162938494 -64586084 - ERVL LTR ERVL -1384 4380 3247 2003 143 7 0 chr3 162938494 162938788 -64585790 + AluSx SINE Alu 2 297 -15 6282 197 43 30 chr3 162938788 162938962 -64585616 - ERVL LTR ERVL -2517 3247 3077 1902 205 27 10 chr3 162938965 162939369 -64585209 - MLT1C LTR MaLR 0 467 57 275 343 57 0 chr3 162941512 162941617 -64582961 - L2 LINE L2 0 3272 3162 195 42 0 0 chr3 162941619 162941643 -64582935 + (TTCA)n Simple_repeat Simple_repeat 3 26 0 302 349 89 15 chr3 162941797 162942082 -64582496 - L2 LINE L2 -213 3059 2752 335 321 25 43 chr3 162942097 162942259 -64582319 - MER117 DNA MER1_type -34 163 5 191 370 65 9 chr3 162942330 162942438 -64582140 - L2 LINE L2 -595 2719 2606 330 273 193 13 chr3 162942439 162942589 -64581989 + MER5B DNA MER1_type 1 177 -1 332 248 30 8 chr3 162942792 162942911 -64581667 - MIR SINE MIR -54 154 69 578 304 104 22 chr3 162944362 162944592 -64579986 + MIR SINE MIR 10 258 -4 1333 156 25 0 chr3 162944791 162945035 -64579543 + L1 LINE L1 4075 4324 -1822 473 196 131 0 chr3 162945381 162945488 -64579090 + L2 LINE L2 3192 3312 -1 757 160 64 0 chr3 162946711 162946958 -64577620 + L1MC2 LINE L1 6043 6343 -1 299 238 63 49 chr3 162948423 162948566 -64576012 + MLT1J2 LTR MaLR 65 209 -241 467 250 130 11 chr3 162948885 162949069 -64575509 - L1ME3A LINE L1 -5 6165 5960 404 298 87 28 chr3 162949370 162949726 -64574852 + L1M4 LINE L1 2736 3112 -3034 2148 243 104 9 chr3 162949732 162950374 -64574204 + HsTC2a DNA Tc2 1 703 -41 454 250 0 10 chr3 162950623 162950727 -64573851 - MER58 DNA MER1_type 0 2420 2318 386 220 0 33 chr3 162950744 162950835 -64573743 - MER58 DNA MER1_type -122 93 6 289 326 8 57 chr3 162950873 162951137 -64573441 + L1M4 LINE L1 3420 3670 -2476 436 171 34 0 chr3 162951257 162951345 -64573233 + L1MA4A LINE L1 6190 6280 -23 248 229 67 67 chr3 162951889 162951994 -64572584 + MIR SINE MIR 8 112 -150 1858 152 7 10 chr3 162952095 162952385 -64572193 + AluJb SINE Alu 1 289 -23 263 262 230 31 chr3 162952673 162952864 -64571714 + MIR SINE MIR 10 238 -24 820 303 58 15 chr3 162953748 162954078 -64570500 + L2 LINE L2 2584 2927 -387 366 289 31 47 chr3 162954351 162954479 -64570099 + MIR3 SINE MIR 43 168 -40 344 288 79 29 chr3 162954659 162954798 -64569780 - MIR3 SINE MIR -21 187 42 392 288 41 29 chr3 162954855 162954960 -64569618 - MIR SINE MIR -7 255 146 895 216 5 49 chr3 162954960 162955069 -64569509 + MER45A DNA AcHobo 1 100 -1481 2614 41 0 0 chr3 162955069 162955363 -64569215 - AluY SINE Alu -17 294 1 895 216 5 49 chr3 162955363 162955438 -64569140 + MER45A DNA AcHobo 100 177 -1 392 288 41 29 chr3 162955438 162955502 -64569076 - MIR SINE MIR -116 146 84 425 241 62 45 chr3 162955678 162955790 -64568788 + MER81 DNA DNA 1 114 0 268 325 62 19 chr3 162956065 162956225 -64568353 + MIR3 SINE MIR 4 170 -38 740 256 17 6 chr3 162956355 162956535 -64568043 + MER63A DNA MER1_type 1 182 -28 239 226 75 0 chr3 162956650 162956703 -64567875 - L2 LINE L2 -252 3061 3005 365 281 83 0 chr3 162956894 162957015 -64567563 - L2 LINE L2 -605 2709 2579 412 284 60 0 chr3 162957019 162957135 -64567443 - L2 LINE L2 0 3272 3150 451 288 14 36 chr3 162957166 162957305 -64567273 - MIR SINE MIR -21 241 106 297 317 93 55 chr3 162958148 162958331 -64566247 + MIR SINE MIR 28 217 -45 426 264 52 75 chr3 162960472 162960684 -64563894 - L2 LINE L2 -1 3271 3065 188 304 206 21 chr3 162961890 162962084 -64562494 + L3b LINE CR1 1219 1448 -135 418 198 51 96 chr3 162963110 162963267 -64561311 - L2 LINE L2 -4 3309 3160 247 240 72 24 chr3 162963943 162964068 -64560510 - MIR SINE MIR -46 216 86 2504 64 0 0 chr3 162965360 162965655 -64558923 + AluY SINE Alu 1 295 -16 453 242 0 0 chr3 162966269 162966368 -64558210 - MIR SINE MIR 0 262 164 * 606 286 58 5 chr3 162966359 162966565 -64558013 + MIR SINE MIR 30 246 -16 226 266 30 118 chr3 162967003 162967097 -64557481 + L2 LINE L2 3075 3149 -164 1719 168 135 48 chr3 162967097 162967489 -64557089 - MSTA LTR MaLR -2 426 1 226 266 30 118 chr3 162967489 162967563 -64557015 + L2 LINE L2 3149 3228 -85 * 228 184 0 0 chr3 162967551 162967589 -64556989 + MIR SINE MIR 214 251 -11 1898 129 18 0 chr3 162967797 162968077 -64556501 + AluSx SINE Alu 17 301 -11 2762 99 3 3 chr3 162968095 162968450 -64556128 + THE1A LTR MaLR 1 355 0 2128 143 114 19 chr3 162968796 162969173 -64555405 - MSTA LTR MaLR 0 428 16 1503 135 4 39 chr3 162969747 162970006 -64554572 + AluJo SINE Alu 25 274 -38 390 195 12 0 chr3 162970183 162970265 -64554313 + MER5A DNA MER1_type 5 87 -102 722 206 39 13 chr3 162971130 162971285 -64553293 + MER5B DNA MER1_type 2 160 -18 2846 132 109 0 chr3 162971285 162971733 -64552845 - MER61D LTR ERV1 0 501 5 1997 202 128 12 chr3 162972181 162972611 -64551967 - MLT1F LTR MaLR -6 536 57 721 269 111 57 chr3 162972663 162973087 -64551491 + MLT1K LTR MaLR 138 584 -4 372 316 71 25 chr3 162973284 162973480 -64551098 + MIR SINE MIR 2 206 -56 2036 141 0 13 chr3 162976469 162976774 -64547804 - AluSx SINE Alu -9 303 3 759 194 146 0 chr3 162977025 162977190 -64547388 - MER5A DNA MER1_type 0 189 1 2586 65 0 0 chr3 162977575 162977881 -64546697 + AluY SINE Alu 1 306 -5 199 243 0 0 chr3 162979416 162979453 -64545125 - MIR SINE MIR -61 147 111 1432 202 35 0 chr3 162979985 162980242 -64544336 + Tigger7 DNA MER2_type 2 267 -466 459 179 32 0 chr3 162980240 162980335 -64544243 + Tigger7 DNA MER2_type 2489 2586 -1 * 5225 170 41 13 chr3 162980525 162982141 -64542437 + L1MB2 LINE L1 4514 6171 0 25 0 0 0 chr3 162982345 162982370 -64542208 + AT_rich Low_complexity Low_complexity 1 25 0 196 351 48 36 chr3 162982783 162982948 -64541630 + MER5A DNA MER1_type 21 187 -2 408 245 57 9 chr3 162984021 162984127 -64540451 - MIR SINE MIR -118 144 34 346 204 11 45 chr3 162985624 162985712 -64538866 - L2 LINE L2 -7 3265 3181 587 286 41 6 chr3 162987058 162987229 -64537349 - MER69A DNA AcHobo 0 177 1 1631 159 0 4 chr3 162987414 162987659 -64536919 - AluSx SINE Alu -15 297 54 866 321 159 5 chr3 162988976 162989556 -64535022 - L2 LINE L2 -838 2476 1808 401 368 52 31 chr3 162989581 162989872 -64534706 - L2 LINE L2 -2028 1286 990 2236 93 0 20 chr3 162990476 162990778 -64533800 + AluSq SINE Alu 1 296 -17 235 346 92 13 chr3 162991486 162991639 -64532939 - L2 LINE L2 -419 2895 2731 2475 54 0 0 chr3 162991725 162992022 -64532556 + AluY SINE Alu 1 297 -14 520 274 40 68 chr3 162992489 162992741 -64531837 - MIR SINE MIR -8 254 10 198 103 0 0 chr3 162993217 162993246 -64531332 + (T)n Simple_repeat Simple_repeat 1 29 0 1741 274 140 11 chr3 162993978 162994620 -64529958 + HsTC2c DNA Tc2 1 725 -4 1549 219 130 52 chr3 162994775 162995346 -64529232 + MLT1L LTR MaLR 1 615 0 262 326 59 53 chr3 162995646 162995833 -64528745 + L3 LINE CR1 1144 1331 -246 308 58 0 3 chr3 162995838 162995882 -64528696 - MADE1 DNA Mariner -40 40 2 426 331 60 38 chr3 162995920 162996097 -64528481 - L2 LINE L2 -83 3230 3041 2593 77 0 0 chr3 162996097 162996410 -64528168 + AluSq SINE Alu 1 313 0 426 331 60 38 chr3 162996410 162996546 -64528032 - L2 LINE L2 -272 3041 2910 592 304 22 13 chr3 162996557 162996787 -64527791 + HsTC2 DNA Tc2 107 338 -1560 1446 326 92 38 chr3 162996792 162997859 -64526719 - L2 LINE L2 -407 2907 1783 295 256 167 0 chr3 162997964 162998054 -64526524 - MIR SINE MIR -77 185 81 1236 215 83 24 chr3 162998054 162998409 -64526169 - MLT1E LTR MaLR 0 593 122 616 218 35 77 chr3 162998413 162998583 -64525995 - MLT1E LTR MaLR -430 163 1 396 329 19 25 chr3 162998669 162998830 -64525748 + L3 LINE CR1 1362 1521 -56 306 246 119 32 chr3 162998926 162999052 -64525526 - MIR3 SINE MIR -5 203 67 203 264 47 101 chr3 162999023 162999152 -64525426 - L2 LINE L2 -43 3270 3149 * 464 289 151 7 chr3 162999301 162999453 -64525125 - MER5A DNA MER1_type -6 183 10 419 171 80 0 chr3 163000616 163000704 -64523874 - L2 LINE L2 0 3313 3219 242 77 0 0 chr3 163000933 163000972 -64523606 - Alu SINE Alu 0 300 262 299 252 43 53 chr3 163002290 163002394 -64522184 + MIR SINE MIR 49 141 -67 194 295 84 48 chr3 163002459 163002625 -64521953 + L2 LINE L2 2811 2982 -290 225 94 0 0 chr3 163002633 163002665 -64521913 + (A)n Simple_repeat Simple_repeat 1 32 0 239 257 29 14 chr3 163002824 163002894 -64521684 + MER91A DNA MER1_type 126 196 0 242 327 0 0 chr3 163003675 163003730 -64520848 - L2 LINE L2 -13 3259 3205 268 284 232 13 chr3 163004265 163004420 -64520158 + MER5A DNA MER1_type 1 189 0 408 219 307 15 chr3 163005232 163005369 -64519209 + MER5B DNA MER1_type 2 178 0 596 216 123 12 chr3 163005386 163005548 -64519030 + MER5A DNA MER1_type 9 188 -1 424 301 57 21 chr3 163005711 163005904 -64518674 - MIR SINE MIR -50 212 13 271 365 26 0 chr3 163006081 163006196 -64518382 - MIR SINE MIR -71 137 20 392 197 306 41 chr3 163006204 163006278 -64518300 + MER5A DNA MER1_type 1 54 -135 2287 88 0 0 chr3 163006278 163006573 -64518005 + AluY SINE Alu 1 295 -16 392 197 306 41 chr3 163006573 163006645 -64517933 + MER5A DNA MER1_type 54 186 -3 283 328 81 9 chr3 163006939 163007123 -64517455 - MIR3 SINE MIR -6 256 55 4388 162 80 19 chr3 163008178 163009819 -64514759 + L1MB1 LINE L1 4280 6019 -149 432 268 124 20 chr3 163009927 163010080 -64514498 - MER5B DNA MER1_type -1 177 9 1126 230 124 89 chr3 163011115 163011641 -64512937 + MLT1K LTR MaLR 17 560 -28 334 315 72 0 chr3 163011953 163012064 -64512514 - MIR SINE MIR -20 242 124 339 303 20 0 chr3 163012188 163012287 -64512291 - MIR SINE MIR -109 153 53 1830 189 58 35 chr3 163013006 163013534 -64511044 + MLT1D LTR MaLR 1 505 0 300 53 0 0 chr3 163015503 163015541 -64509037 + (TG)n Simple_repeat Simple_repeat 1 38 0 209 205 0 0 chr3 163017233 163017272 -64507306 + L2 LINE L2 2198 2236 -1078 454 264 106 83 chr3 163017498 163017752 -64506826 + L2 LINE L2 2659 2918 -396 239 281 29 50 chr3 163018127 163018276 -64506302 - MIR3 SINE MIR -71 137 13 499 292 148 30 chr3 163018341 163018605 -64505973 - MER102b DNA MER1_type -33 308 14 331 171 224 0 chr3 163018832 163018908 -64505670 + MIR SINE MIR 51 143 -119 328 311 134 8 chr3 163021148 163021267 -64503311 + MIR SINE MIR 20 153 -109 465 205 0 133 chr3 163021269 163021435 -64503143 + MER46C DNA MER2_type 2 145 -193 261 217 17 17 chr3 163022627 163022687 -64501891 - L2 LINE L2 -8 3264 3205 244 241 0 0 chr3 163022994 163023052 -64501526 - MER46C DNA MER2_type -33 305 248 420 242 73 16 chr3 163023374 163023498 -64501080 - MER94 DNA DNA -2 132 2 252 309 45 89 chr3 163023717 163024200 -64500378 - L2 LINE L2 -526 2788 2327 216 0 0 0 chr3 163026517 163026541 -64498037 + (CA)n Simple_repeat Simple_repeat 1 24 0 487 279 85 0 chr3 163028141 163028306 -64496272 + MIR SINE MIR 46 224 -38 1444 96 5 0 chr3 163028344 163028543 -64496035 + L1PA7 LINE L1 5940 6139 -15 22 0 0 0 chr3 163029048 163029070 -64495508 + AT_rich Low_complexity Low_complexity 1 22 0 465 111 28 0 chr3 163030532 163030604 -64493974 - MSTB LTR MaLR -352 74 1 197 62 0 31 chr3 163030841 163030873 -64493705 + (TA)n Simple_repeat Simple_repeat 2 32 0 312 172 17 0 chr3 163030874 163030932 -64493646 - L2 LINE L2 -10 3303 3245 266 286 0 0 chr3 163030953 163031016 -64493562 + (TATG)n Simple_repeat Simple_repeat 4 66 0 754 234 55 31 chr3 163031021 163031278 -64493300 + HAL1 LINE L1 1490 1752 -755 547 247 71 94 chr3 163031504 163031644 -64492934 + MIR SINE MIR 14 147 -115 1652 121 19 102 chr3 163031644 163031957 -64492621 + AluSx SINE Alu 1 287 -25 547 247 71 94 chr3 163031957 163032071 -64492507 + MIR SINE MIR 147 262 0 466 228 76 29 chr3 163032428 163032599 -64491979 + HAL1b LINE L1 746 924 -424 2793 292 65 68 chr3 163032863 163033012 -64491566 - L2 LINE L2 -1 3312 3164 2361 110 33 33 chr3 163033012 163033376 -64491202 - THE1B LTR MaLR 0 364 1 2793 292 65 68 chr3 163033376 163035497 -64489081 - L2 LINE L2 -149 3164 1038 1270 248 128 55 chr3 163035518 163036059 -64488519 + MLT1H1 LTR MaLR 16 555 0 505 311 84 34 chr3 163036130 163036426 -64488152 - L2 LINE L2 -2338 976 666 561 320 81 0 chr3 163036430 163036652 -64487926 + MIR SINE MIR 2 241 -21 938 314 78 16 chr3 163036728 163037165 -64487413 - L2 LINE L2 -2718 596 133 297 344 73 0 chr3 163037559 163037655 -64486923 - MER91A DNA MER1_type -1 195 93 913 264 53 17 chr3 163037977 163038276 -64486302 + MLT1K LTR MaLR 134 443 -145 1566 182 7 14 chr3 163038303 163038578 -64486000 - AluJb SINE Alu -39 273 1 1240 261 133 6 chr3 163038808 163039298 -64485280 + L2 LINE L2 16 567 -2747 937 271 90 19 chr3 163039309 163039733 -64484845 + L2 LINE L2 1174 1627 -1687 2610 236 124 29 chr3 163039761 163040980 -64483598 + L2 LINE L2 1916 3313 0 1126 219 94 37 chr3 163041007 163041304 -64483274 - MLT1A1 LTR MaLR 0 365 52 233 355 16 27 chr3 163041337 163041520 -64483058 + MIR SINE MIR 82 262 0 577 172 13 0 chr3 163042426 163042577 -64482001 + CT-rich Low_complexity Low_complexity 1 153 0 198 0 0 0 chr3 163042968 163042990 -64481588 + (TTTTTG)n Simple_repeat Simple_repeat 3 24 0 1754 159 0 77 chr3 163043198 163043525 -64481053 - AluJb SINE Alu -10 302 1 9068 132 11 19 chr3 163043802 163045288 -64479290 + L1PA11 LINE L1 3871 5351 -823 2277 93 3 0 chr3 163045288 163045578 -64479000 + AluSx SINE Alu 5 295 -17 9068 132 11 19 chr3 163045578 163046395 -64478183 + L1PA11 LINE L1 5351 6174 0 713 253 9 50 chr3 163046508 163046729 -64477849 + MIR SINE MIR 9 220 -42 21 57 0 0 chr3 163047058 163047093 -64477485 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 163047873 163047895 -64476683 + AT_rich Low_complexity Low_complexity 1 22 0 303 49 0 0 chr3 163047941 163047982 -64476596 + (CAA)n Simple_repeat Simple_repeat 1 41 0 180 0 0 0 chr3 163048013 163048033 -64476545 + (A)n Simple_repeat Simple_repeat 1 20 0 504 137 63 0 chr3 163049583 163049678 -64474900 - MER5A DNA MER1_type -80 109 9 1823 23 0 14 chr3 163049800 163050017 -64474561 + L1PA2 LINE L1 5942 6155 0 7995 122 23 3 chr3 163050344 163051551 -64473027 + Tigger3b DNA MER2_type 1 1231 0 255 61 0 0 chr3 163054640 163054673 -64469905 + (TG)n Simple_repeat Simple_repeat 2 34 0 297 333 61 43 chr3 163056265 163056544 -64468034 + L2 LINE L2 2456 2739 -575 621 262 91 35 chr3 163057055 163057482 -64467096 - L1MDa LINE L1 -4812 1728 1278 2130 79 61 0 chr3 163058210 163058488 -64466090 - AluSc SINE Alu -14 295 1 289 279 183 0 chr3 163059056 163059160 -64465418 - MIR SINE MIR -61 147 25 571 236 43 37 chr3 163059720 163059881 -64464697 - MIR SINE MIR -81 181 20 186 287 109 30 chr3 163060900 163061001 -64463577 - MIR SINE MIR -63 145 37 700 223 99 17 chr3 163061276 163061509 -64463069 + MER112 DNA MER1_type 5 256 0 24 32 0 0 chr3 163061907 163061938 -64462640 + AT_rich Low_complexity Low_complexity 1 31 0 181 374 15 15 chr3 163063114 163063245 -64461333 + L2 LINE L2 2728 2858 -456 1127 201 5 5 chr3 163063449 163063653 -64460925 + MLT1A1 LTR MaLR 1 204 -161 2415 95 62 40 chr3 163063758 163064020 -64460558 + LTR49-int LTR ERV1 5923 6199 -132 2432 93 3 3 chr3 163064020 163064332 -64460246 + AluSx SINE Alu 1 312 0 2415 95 62 40 chr3 163064332 163064469 -64460109 + LTR49-int LTR ERV1 6199 6331 0 1131 124 91 9 chr3 163064469 163064679 -64459899 + LTR49 LTR ERV1 1 227 -368 459 35 0 0 chr3 163064701 163064758 -64459820 + (CA)n Simple_repeat Simple_repeat 2 58 0 33 56 0 0 chr3 163065710 163065764 -64458814 + AT_rich Low_complexity Low_complexity 1 54 0 833 253 67 64 chr3 163065829 163066126 -64458452 - MLT1J LTR MaLR -146 365 68 300 293 0 17 chr3 163066209 163066327 -64458251 - L1MC/D LINE L1 -1985 5823 5722 267 309 24 0 chr3 163066827 163066911 -64457667 + GA-rich Low_complexity Low_complexity 1 86 0 260 262 0 16 chr3 163067290 163067351 -64457227 - MLT1K LTR MaLR -342 246 187 401 254 100 12 chr3 163067418 163067600 -64456978 + MIR SINE MIR 21 214 -48 365 268 197 10 chr3 163067758 163067956 -64456622 + L1MC4 LINE L1 6762 6996 -1046 1143 281 75 16 chr3 163068409 163068823 -64455755 - LTR16A LTR ERVL 0 450 1 324 281 0 24 chr3 163068986 163069068 -64455510 + MER81 DNA DNA 18 97 -17 2572 337 57 27 chr3 163069281 163070581 -64453997 - ERVL LTR ERVL -638 5126 3788 409 311 56 31 chr3 163070650 163070811 -64453767 - MLT1H LTR MaLR 0 549 385 479 317 22 9 chr3 163070971 163071229 -64453349 - LTR16A LTR ERVL -154 296 4 1916 149 73 81 chr3 163071971 163072144 -64452434 + MSTB LTR MaLR 1 174 -252 2494 61 0 0 chr3 163072144 163072437 -64452141 + AluY SINE Alu 1 293 -18 1916 149 73 81 chr3 163072437 163072685 -64451893 + MSTB LTR MaLR 174 419 -7 545 219 23 0 chr3 163073921 163074049 -64450529 + MIR3 SINE MIR 40 170 -38 1687 163 74 14 chr3 163074074 163074424 -64450154 + LTR52 LTR ERVL 41 411 -10 1307 174 54 35 chr3 163074458 163074774 -64449804 - MER33 DNA MER1_type -2 322 1 283 206 309 0 chr3 163074837 163074963 -64449615 - MER104 DNA Tc2 -1 179 15 24 32 0 0 chr3 163074966 163074997 -64449581 + AT_rich Low_complexity Low_complexity 1 31 0 1910 187 6 11 chr3 163075220 163075567 -64449011 + MLT1A1 LTR MaLR 21 365 0 531 234 30 42 chr3 163075636 163075803 -64448775 - MIR SINE MIR -38 224 60 1705 206 43 0 chr3 163077367 163077692 -64446886 + MLT1A1-int LTR MaLR 1300 1638 -97 416 183 77 0 chr3 163077792 163077896 -64446682 + MLT1A1-int LTR MaLR 1624 1735 0 2140 157 14 20 chr3 163077896 163078252 -64446326 + MLT1A1 LTR MaLR 1 354 -11 553 295 37 23 chr3 163078289 163078506 -64446072 + L2 LINE L2 3090 3309 -4 401 282 113 5 chr3 163078475 163078670 -64445908 - MIR SINE MIR -37 225 10 * 739 290 88 62 chr3 163078671 163079215 -64445363 - MLT1L LTR MaLR -4 611 54 2003 258 60 25 chr3 163079215 163079784 -64444794 - MLT1G LTR MaLR 0 590 2 180 152 0 0 chr3 163081290 163081323 -64443255 + A-rich Low_complexity Low_complexity 3 35 0 240 306 159 27 chr3 163081421 163081679 -64442899 - L2 LINE L2 0 3313 3022 22 0 0 0 chr3 163082337 163082359 -64442219 + AT_rich Low_complexity Low_complexity 1 22 0 628 283 40 6 chr3 163083318 163083491 -64441087 - MIR3 SINE MIR 0 208 30 269 306 31 10 chr3 163083591 163083689 -64440889 + L1ME4a LINE L1 4493 4592 -1554 48 43 0 0 chr3 163083810 163083879 -64440699 + AT_rich Low_complexity Low_complexity 1 69 0 630 309 50 50 chr3 163084332 163084869 -64439709 + L1ME4a LINE L1 5311 5847 -274 1322 97 126 10 chr3 163085327 163085533 -64439045 + MER30 DNA MER1_type 1 230 0 198 0 0 0 chr3 163086206 163086228 -64438350 + (T)n Simple_repeat Simple_repeat 1 22 0 503 281 47 6 chr3 163086637 163086808 -64437770 - L2 LINE L2 0 3313 3136 526 247 78 0 chr3 163087149 163087315 -64437263 - LTR33 LTR ERVL -2 519 341 335 280 95 52 chr3 163087345 163087577 -64437001 - LTR33A LTR ERVL -269 254 13 407 241 109 69 chr3 163091770 163092179 -64432399 - L1ME4a LINE L1 -171 5950 5522 1982 158 3 0 chr3 163092437 163092735 -64431843 + AluJb SINE Alu 2 300 -12 2106 102 36 20 chr3 163092969 163093274 -64431304 - AluSx SINE Alu 0 312 3 471 250 155 0 chr3 163093410 163093558 -64431020 - MIR SINE MIR -73 189 19 835 164 0 0 chr3 163093592 163093714 -64430864 + AluSq/x SINE Alu 1 122 -190 392 50 0 17 chr3 163093714 163093774 -64430804 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 756 168 0 23 chr3 163093776 163093907 -64430671 + FRAM SINE Alu 41 168 -8 1889 118 0 8 chr3 163094809 163095072 -64429506 - AluSq SINE Alu -52 261 1 2659 101 21 8 chr3 163095072 163095457 -64429121 + MER61-int LTR ERV1 3484 3873 -1344 232 240 10 94 chr3 163095512 163095608 -64428970 + LTR27 LTR ERV1 549 636 0 507 70 14 0 chr3 163095617 163095688 -64428890 - L1P4 LINE L1 -635 5531 5460 444 247 206 0 chr3 163095876 163096022 -64428556 - MER5A DNA MER1_type -3 186 11 259 322 92 40 chr3 163096401 163096553 -64428025 - MIR SINE MIR -79 183 24 2348 93 3 3 chr3 163096822 163097122 -64427456 - AluSx SINE Alu -12 300 1 287 200 38 62 chr3 163097912 163097992 -64426586 - L2 LINE L2 -6 3307 3230 2115 134 3 28 chr3 163098094 163098414 -64426164 - AluSx SINE Alu 0 312 1 2057 113 30 23 chr3 163099028 163099330 -64425248 - AluSg SINE Alu -6 304 1 207 162 0 0 chr3 163100131 163100168 -64424410 + CT-rich Low_complexity Low_complexity 4 40 0 549 80 0 0 chr3 163101450 163101525 -64423053 + (TG)n Simple_repeat Simple_repeat 1 75 0 377 133 0 111 chr3 163102449 163102584 -64421994 - AluSq/x SINE Alu -183 120 1 1058 188 28 32 chr3 163103242 163103492 -64421086 - L1MD3 LINE L1 -3 7992 7744 2858 183 37 29 chr3 163103497 163104119 -64420459 + L1MB4 LINE L1 4094 4720 -1426 4918 181 25 16 chr3 163104202 163105391 -64419187 + L1MB4 LINE L1 4966 6178 -2 793 261 145 9 chr3 163105809 163106127 -64418451 + L2 LINE L2 2904 3264 -49 1474 167 0 96 chr3 163106206 163106541 -64418037 + AluJo SINE Alu 1 303 -9 181 25 0 100 chr3 163107437 163107477 -64417101 + (GGGA)n Simple_repeat Simple_repeat 3 38 0 377 297 19 32 chr3 163107779 163107934 -64416644 + MIR3 SINE MIR 5 157 -51 1960 179 21 8 chr3 163108893 163109267 -64415311 - L1MC4a LINE L1 -1218 6590 6212 405 253 0 30 chr3 163109803 163109902 -64414676 - LTR67 LTR ERVL -4 553 458 404 313 16 8 chr3 163110575 163110703 -64413875 + MIR SINE MIR 18 146 -116 492 260 78 26 chr3 163110707 163110899 -64413679 + MIR SINE MIR 4 205 -57 249 119 0 0 chr3 163112362 163112404 -64412174 + (TA)n Simple_repeat Simple_repeat 2 43 0 2131 143 0 0 chr3 163112404 163112698 -64411880 - AluSq SINE Alu -19 294 1 186 103 0 0 chr3 163112978 163113007 -64411571 + (TGAA)n Simple_repeat Simple_repeat 2 30 0 247 228 174 94 chr3 163113027 163113176 -64411402 - MLT1K LTR MaLR -411 177 17 1412 152 6 118 chr3 163113603 163113925 -64410653 - AluJo SINE Alu -12 290 5 665 298 85 20 chr3 163114054 163114407 -64410171 + L2 LINE L2 2927 3302 -11 2239 101 40 0 chr3 163114732 163115030 -64409548 - AluSx SINE Alu -2 310 1 2055 148 0 7 chr3 163115032 163115336 -64409242 - AluJb SINE Alu -10 302 1 2798 70 94 17 chr3 163115816 163116232 -64408346 - LTR7 LTR ERV1 -2 448 1 217 287 0 20 chr3 163118456 163118557 -64406021 + G-rich Low_complexity Low_complexity 6 104 0 23 54 0 0 chr3 163119945 163119982 -64404596 + GC_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr3 163121769 163121797 -64402781 + AT_rich Low_complexity Low_complexity 1 28 0 190 229 83 0 chr3 163124314 163124362 -64400216 + L2 LINE L2 3262 3313 0 216 0 0 0 chr3 163124851 163124875 -64399703 + (T)n Simple_repeat Simple_repeat 1 24 0 531 123 0 12 chr3 163124941 163125022 -64399556 - MADE1 DNA Mariner 0 80 1 912 214 6 6 chr3 163126282 163126460 -64398118 - MER45A DNA AcHobo 0 178 1 585 230 61 36 chr3 163128043 163128208 -64396370 - MIR SINE MIR -31 231 63 377 297 19 32 chr3 163129162 163129317 -64395261 - MIR3 SINE MIR -51 157 5 572 293 82 66 chr3 163129783 163130282 -64394296 + MLT1J LTR MaLR 5 511 0 215 264 208 10 chr3 163130338 163130463 -64394115 - MIR3 SINE MIR -77 131 12 381 226 85 64 chr3 163130463 163130678 -64393900 + MER20 DNA MER1_type 1 214 -5 224 235 153 31 chr3 163130813 163130911 -64393667 - L2 LINE L2 -2076 1238 1129 233 385 0 7 chr3 163131098 163131233 -64393345 - L2 LINE L2 -2559 755 622 315 0 0 0 chr3 163131681 163131716 -64392862 + (CA)n Simple_repeat Simple_repeat 2 36 0 326 353 70 31 chr3 163131930 163132318 -64392260 + MLT1K LTR MaLR 186 588 0 191 342 79 9 chr3 163132342 163132456 -64392122 + L2 LINE L2 3180 3301 -12 209 214 0 0 chr3 163132487 163132529 -64392049 + MER5A DNA MER1_type 1 42 -147 180 0 0 0 chr3 163132559 163132579 -64391999 + (TTTA)n Simple_repeat Simple_repeat 2 21 0 669 106 43 0 chr3 163132582 163132676 -64391902 - FRAM SINE Alu -30 146 49 2257 105 3 0 chr3 163134508 163134802 -64389776 - AluSq SINE Alu -16 297 3 471 250 155 0 chr3 163134938 163135086 -64389492 - MIR SINE MIR -73 189 19 835 164 0 0 chr3 163135120 163135242 -64389336 + AluSq/x SINE Alu 1 122 -190 392 50 0 17 chr3 163135242 163135302 -64389276 + (TAAAA)n Simple_repeat Simple_repeat 2 60 0 756 168 0 23 chr3 163135304 163135435 -64389143 + FRAM SINE Alu 41 168 -8 2153 103 30 0 chr3 163136344 163136644 -64387934 - AluSx SINE Alu -1 311 3 222 62 0 0 chr3 163137198 163137230 -64387348 + (A)n Simple_repeat Simple_repeat 1 32 0 272 304 31 108 chr3 163137766 163138052 -64386526 - L2 LINE L2 -84 3188 2925 890 268 87 23 chr3 163138102 163138552 -64386026 + MLT1J LTR MaLR 3 511 0 221 281 45 0 chr3 163138601 163138690 -64385888 - L2 LINE L2 -21 3251 3159 458 265 123 6 chr3 163138735 163138897 -64385681 - MIR SINE MIR -3 259 79 1666 152 66 39 chr3 163138950 163139312 -64385266 + THE1C LTR MaLR 1 372 -3 4298 179 30 20 chr3 163139546 163140446 -64384132 - L1MC4a LINE L1 -2 7806 6898 5360 101 1 8 chr3 163140446 163141182 -64383396 + LTR17 LTR ERV1 1 731 -49 824 231 113 0 chr3 163141205 163141417 -64383161 - L1MC4a LINE L1 -903 6905 6670 192 250 31 16 chr3 163144388 163144452 -64380126 - MIR SINE MIR -170 92 28 351 0 0 0 chr3 163144690 163144729 -64379849 + (T)n Simple_repeat Simple_repeat 1 39 0 257 302 71 0 chr3 163144874 163145000 -64379578 + MIR SINE MIR 20 154 -108 324 219 9 48 chr3 163145012 163145117 -64379461 - MARNA DNA Mariner -212 374 274 1679 171 0 4 chr3 163145196 163145465 -64379113 + AluJo SINE Alu 23 290 -22 1504 96 0 5 chr3 163145472 163145660 -64378918 + AluSq SINE Alu 1 187 -126 416 283 96 16 chr3 163145785 163145972 -64378606 + MIR SINE MIR 56 257 -5 650 273 141 0 chr3 163146342 163146562 -64378016 + MIR SINE MIR 2 252 -10 332 238 346 5 chr3 163146573 163146787 -64377791 - L2 LINE L2 -6 3307 3021 496 277 66 97 chr3 163147302 163147829 -64376749 + MLT1J LTR MaLR 1 511 0 912 228 20 33 chr3 163148654 163148970 -64375608 + L1M3 LINE L1 5216 5528 -652 329 256 135 45 chr3 163149091 163149224 -64375354 + MER63A DNA MER1_type 66 210 0 351 306 93 50 chr3 163149572 163150145 -64374433 - HAL1b LINE L1 -710 638 71 189 282 28 56 chr3 163151795 163151863 -64372715 - MIR3 SINE MIR -26 182 117 300 269 127 15 chr3 163151863 163151997 -64372581 + MER5A DNA MER1_type 1 149 -40 451 55 0 0 chr3 163152635 163152690 -64371888 - L1PA7 LINE L1 -278 5876 5822 1113 176 115 80 chr3 163153020 163153395 -64371183 - MLT1C LTR MaLR -2 388 1 222 311 239 6 chr3 163153454 163153634 -64370944 + MIR SINE MIR 41 262 0 198 191 191 11 chr3 163154078 163154172 -64370406 - L2 LINE L2 -276 3037 2927 1431 152 3 118 chr3 163154304 163154627 -64369951 + AluJo SINE Alu 5 290 -12 247 228 174 94 chr3 163155054 163155203 -64369375 + MLT1K LTR MaLR 17 177 -411 186 103 0 0 chr3 163155223 163155252 -64369326 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 2325 114 0 3 chr3 163155531 163155838 -64368740 + AluSx SINE Alu 1 306 -6 1890 151 6 35 chr3 163156453 163156770 -64367808 + AluSx SINE Alu 1 308 -4 287 200 38 62 chr3 163156878 163156958 -64367620 + L2 LINE L2 3230 3307 -6 2348 93 3 3 chr3 163157748 163158048 -64366530 + AluSx SINE Alu 1 300 -12 273 316 92 40 chr3 163158317 163158469 -64366109 + MIR SINE MIR 24 183 -79 444 247 206 0 chr3 163158848 163158994 -64365584 + MER5A DNA MER1_type 11 186 -3 507 70 14 0 chr3 163159182 163159253 -64365325 + L1P4 LINE L1 5460 5531 -635 232 240 10 94 chr3 163159262 163159358 -64365220 - LTR27 LTR ERV1 0 636 549 8547 183 39 50 chr3 163159413 163162638 -64361940 - LTR27-int LTR ERV1 -1139 6066 632 4215 172 10 22 chr3 163162647 163163485 -64361093 - LTR27-int LTR ERV1 -390 4827 2174 2054 170 86 7 chr3 163163489 163163895 -64360683 - LTR27-int LTR ERV1 -6246 845 408 406 273 113 63 chr3 163163895 163164133 -64360445 - LTR27-int LTR ERV1 -6840 251 2 2920 164 4 34 chr3 163164221 163164326 -64360252 - LTR27 LTR ERV1 -130 506 399 1931 115 0 18 chr3 163164326 163164604 -64359974 - AluSg SINE Alu -4 306 34 2920 164 4 34 chr3 163164604 163165032 -64359546 - LTR27 LTR ERV1 -237 399 10 3889 114 34 18 chr3 163165032 163165655 -64358923 + L1PA16 LINE L1 5534 6166 0 1976 138 3 3 chr3 163165657 163165984 -64358594 + AluSq SINE Alu 1 327 0 245 348 59 0 chr3 163166037 163166155 -64358423 - MER91A DNA MER1_type -68 128 4 2294 108 0 0 chr3 163167165 163167470 -64357108 - AluSx SINE Alu -7 305 1 242 188 42 0 chr3 163169630 163169678 -64354900 + MER5A DNA MER1_type 140 189 0 521 274 105 24 chr3 163169918 163170250 -64354328 + MER113 DNA MER1_type? 7 365 -156 233 235 29 44 chr3 163170459 163170527 -64354051 + L2 LINE L2 3247 3313 0 1526 179 20 115 chr3 163171279 163171688 -64352890 - MLT1A2 LTR MaLR -4 370 1 259 307 39 28 chr3 163172045 163172224 -64352354 + L1ME3A LINE L1 4637 4817 -1329 8283 186 37 18 chr3 163172254 163173834 -64350744 - MER52A LTR ERV1 0 1755 8 409 103 0 0 chr3 163173930 163173988 -64350590 + FLAM SINE Alu 75 132 -11 830 250 93 74 chr3 163173990 163174236 -64350342 + L1ME3A LINE L1 5193 5433 -737 2221 130 3 0 chr3 163174236 163174544 -64350034 + AluSq SINE Alu 1 309 -4 830 250 93 74 chr3 163174544 163174919 -64349659 + L1ME3A LINE L1 5433 5831 -339 1766 146 146 0 chr3 163174919 163175213 -64349365 - MER1B DNA MER1_type 0 337 1 830 250 93 74 chr3 163175213 163175287 -64349291 + L1ME3A LINE L1 5831 5902 -268 198 0 0 0 chr3 163175515 163175537 -64349041 + (A)n Simple_repeat Simple_repeat 1 22 0 608 234 176 5 chr3 163175647 163175852 -64348726 + MER112 DNA MER1_type 12 251 -9 547 262 115 0 chr3 163175887 163176078 -64348500 + MIR SINE MIR 35 247 -15 252 200 0 0 chr3 163176518 163176583 -64347995 + (CA)n Simple_repeat Simple_repeat 1 65 0 309 218 173 38 chr3 163176602 163176735 -64347843 - MIR3 SINE MIR -41 167 17 1851 174 0 16 chr3 163176889 163177200 -64347378 - AluJo SINE Alu 0 312 7 225 169 0 65 chr3 163178671 163178748 -64345830 + G-rich Low_complexity Low_complexity 5 76 0 788 256 63 99 chr3 163178749 163178765 -64345813 + HAL1 LINE L1 1175 1190 -1317 716 216 0 8 chr3 163178765 163178899 -64345679 + FLAM_A SINE Alu 1 133 0 788 256 63 99 chr3 163178899 163179031 -64345547 + HAL1 LINE L1 1190 1325 -1182 2210 85 7 0 chr3 163179031 163179339 -64345239 + AluSp SINE Alu 1 310 0 788 256 63 99 chr3 163179339 163179715 -64344863 + HAL1 LINE L1 1325 1682 -825 26 30 0 0 chr3 163179738 163179771 -64344807 + AT_rich Low_complexity Low_complexity 1 33 0 276 281 46 52 chr3 163180247 163180400 -64344178 + HAL1 LINE L1 2245 2396 -111 22 0 0 0 chr3 163180502 163180524 -64344054 + AT_rich Low_complexity Low_complexity 1 22 0 208 146 0 24 chr3 163180893 163180934 -64343644 + (ATG)n Simple_repeat Simple_repeat 2 41 0 929 133 14 21 chr3 163181138 163181281 -64343297 + AluJ SINE Alu 1 142 -170 7251 58 13 43 chr3 163181380 163183402 -64341176 + SVA Other Other 2 1385 -1 1190 135 12 0 chr3 163183419 163183589 -64340989 + AluJ SINE Alu 122 293 -19 3869 174 32 46 chr3 163183606 163184404 -64340174 - MER54A LTR ERVL 0 901 114 2467 60 0 7 chr3 163184404 163184703 -64339875 + AluY SINE Alu 1 297 -14 3869 174 32 46 chr3 163184703 163184774 -64339804 - MER54A LTR ERVL -787 114 44 515 252 79 46 chr3 163184761 163185147 -64339431 + MLT1H LTR MaLR 73 549 0 * 2385 92 0 3 chr3 163185245 163185548 -64339030 + AluSx SINE Alu 1 302 -10 292 185 62 0 chr3 163186528 163186593 -64337985 + MER113 DNA MER1_type? 64 132 -389 1740 146 4 11 chr3 163188018 163188285 -64336293 - AluJb SINE Alu -13 299 35 222 37 0 0 chr3 163188300 163188327 -64336251 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 364 241 116 0 chr3 163189879 163189991 -64334587 + LTR67 LTR ERVL 427 551 -6 730 265 5 36 chr3 163190933 163191156 -64333422 - AluJb SINE Alu -10 302 87 1287 52 0 7 chr3 163191174 163191357 -64333221 + AluY SINE Alu 130 311 0 364 241 116 0 chr3 163192146 163192258 -64332320 - LTR67 LTR ERVL -6 551 427 1568 218 129 13 chr3 163194043 163194492 -64330086 + Tigger1 DNA MER2_type 1 501 -1917 197 231 205 0 chr3 163194915 163194993 -64329585 + MIR SINE MIR 37 130 -78 308 276 19 19 chr3 163195036 163195141 -64329437 - MER5A DNA MER1_type -22 167 63 1747 202 81 98 chr3 163195297 163196040 -64328538 - L1MC5 LINE L1 -314 7647 6922 2239 111 7 0 chr3 163196040 163196338 -64328240 - AluSp SINE Alu -12 301 2 1747 202 81 98 chr3 163196338 163196554 -64328024 - L1MC5 LINE L1 -1039 6922 6704 220 214 0 0 chr3 163196554 163196596 -64327982 - MER5B DNA MER1_type -135 43 2 449 211 37 0 chr3 163196749 163196858 -64327720 + L1ME LINE L1 5547 5659 -462 1849 139 6 47 chr3 163196858 163197175 -64327403 - AluJo SINE Alu -8 304 1 9874 127 49 1 chr3 163197175 163198692 -64325886 - Tigger1 DNA MER2_type -829 1589 1 907 71 0 0 chr3 163199527 163199640 -64324938 - AluY SINE Alu -69 242 130 1204 171 5 36 chr3 163199658 163199880 -64324698 + AluJo SINE Alu 87 301 -11 1938 111 32 21 chr3 163200777 163201056 -64323522 + AluSg SINE Alu 1 282 -28 217 27 81 0 chr3 163201061 163201098 -64323480 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 887 168 25 61 chr3 163201899 163202020 -64322558 - MER5A DNA MER1_type 0 189 76 2477 69 3 0 chr3 163202020 163202323 -64322255 - AluY SINE Alu -7 304 1 887 168 25 61 chr3 163202323 163202397 -64322181 - MER5A DNA MER1_type -113 76 1 551 175 52 0 chr3 163202623 163202720 -64321858 - MER45A DNA AcHobo -22 156 55 280 322 52 71 chr3 163202883 163203094 -64321484 + L1MC/D LINE L1 5550 5756 -2052 5808 40 12 3 chr3 163203308 163203975 -64320603 - SVA Other Other -4 1382 710 279 167 125 0 chr3 163204716 163204788 -64319790 - MLT1J2 LTR MaLR -215 235 155 1402 203 217 22 chr3 163204826 163204945 -64319633 + MLT1D LTR MaLR 1 95 -410 2558 108 62 23 chr3 163204945 163205378 -64319200 + LTR7 LTR ERV1 1 450 0 1402 203 217 22 chr3 163205378 163205426 -64319152 + MLT1D LTR MaLR 95 132 -373 198 71 0 0 chr3 163205426 163205454 -64319124 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 1402 203 217 22 chr3 163205454 163205699 -64318879 + MLT1D LTR MaLR 132 495 -10 317 318 102 40 chr3 163205830 163206104 -64318474 + L2 LINE L2 2568 2858 -456 431 287 75 39 chr3 163206995 163207167 -64317411 - L1ME4a LINE L1 -283 5838 5651 1971 133 6 48 chr3 163207167 163207483 -64317095 + AluJo SINE Alu 2 304 -8 431 287 75 39 chr3 163207483 163207592 -64316986 - L1ME4a LINE L1 -470 5651 5547 220 214 0 0 chr3 163207745 163207787 -64316791 + MER5B DNA MER1_type 2 43 -135 1774 205 79 96 chr3 163207787 163208003 -64316575 + L1MC5 LINE L1 6704 6922 -1039 2265 114 3 0 chr3 163208003 163208302 -64316276 + AluSp SINE Alu 2 301 -12 1774 205 79 96 chr3 163208302 163209045 -64315533 + L1MC5 LINE L1 6922 7647 -314 308 276 19 19 chr3 163209201 163209306 -64315272 + MER5A DNA MER1_type 63 167 -22 197 231 205 0 chr3 163209349 163209427 -64315151 - MIR SINE MIR -78 130 37 329 230 94 23 chr3 163209771 163209986 -64314592 - L2 LINE L2 -2968 346 33 582 278 136 13 chr3 163210762 163211064 -64313514 + L1ME4a LINE L1 5490 5828 -293 244 261 68 11 chr3 163211258 163211346 -64313232 + LTR67 LTR ERVL 458 550 -7 294 221 205 0 chr3 163211466 163211588 -64312990 - MER103 DNA DNA -19 147 1 589 282 127 7 chr3 163211939 163212469 -64312109 + L2 LINE L2 2618 3289 -24 2019 141 133 11 chr3 163214388 163214764 -64309814 - MSTB LTR MaLR -4 422 1 216 288 161 8 chr3 163215690 163215808 -64308770 - MIR SINE MIR -3 259 124 1475 150 108 16 chr3 163216422 163216728 -64307850 + L1MB2 LINE L1 5835 6168 -3 438 275 27 47 chr3 163221574 163221723 -64302855 + MER5A DNA MER1_type 35 180 -9 239 130 0 22 chr3 163221905 163221951 -64302627 + (CATATA)n Simple_repeat Simple_repeat 4 48 0 602 213 326 14 chr3 163222948 163223239 -64301339 + L1MC4 LINE L1 7657 8038 -4 205 224 52 0 chr3 163223964 163224022 -64300556 + CT-rich Low_complexity Low_complexity 6 66 0 674 268 99 9 chr3 163224233 163224446 -64300132 - MIR SINE MIR -11 251 20 814 234 16 10 chr3 163224963 163225155 -64299423 - MER58A DNA MER1_type 0 224 32 2041 111 3 34 chr3 163225293 163225591 -64298987 - AluSp SINE Alu -24 289 1 204 40 0 0 chr3 163226068 163226093 -64298485 + (T)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr3 163226762 163226784 -64297794 + AT_rich Low_complexity Low_complexity 1 22 0 2349 74 3 3 chr3 163227323 163227621 -64296957 + AluSp SINE Alu 1 298 -15 23 86 0 0 chr3 163227912 163227970 -64296608 + AT_rich Low_complexity Low_complexity 1 58 0 2083 115 12 46 chr3 163228400 163228723 -64295855 - AluSx SINE Alu 0 312 1 1351 99 165 50 chr3 163228820 163229062 -64295516 - AluSx SINE Alu -24 288 19 1298 79 40 13 chr3 163229829 163230057 -64294521 + SVA Other Other 635 868 -518 1756 97 11 75 chr3 163230072 163230536 -64294042 + SVA Other Other 433 866 -520 6636 57 9 56 chr3 163230553 163231610 -64292968 + SVA Other Other 433 1442 0 2340 76 10 0 chr3 163232484 163232785 -64291793 - AluY SINE Alu -7 304 1 192 220 60 0 chr3 163233147 163233197 -64291381 + L2 LINE L2 3261 3313 0 1328 161 18 9 chr3 163233367 163233584 -64290994 + AluJo SINE Alu 81 299 -13 1929 82 68 14 chr3 163233822 163234101 -64290477 + AluY SINE Alu 2 295 -16 210 71 0 0 chr3 163234134 163234162 -64290416 + (TA)n Simple_repeat Simple_repeat 1 28 0 291 338 114 70 chr3 163234179 163234298 -64290280 - L2 LINE L2 -18 3254 3142 207 100 0 0 chr3 163234298 163234328 -64290250 + (CAAG)n Simple_repeat Simple_repeat 2 31 0 291 338 114 70 chr3 163234328 163234551 -64290027 - L2 LINE L2 -130 3142 2897 1584 127 20 0 chr3 163235173 163235417 -64289161 + L1PB2 LINE L1 5901 6149 -2 25 0 0 0 chr3 163235417 163235442 -64289136 + AT_rich Low_complexity Low_complexity 1 25 0 207 0 0 0 chr3 163235881 163235904 -64288674 + (TG)n Simple_repeat Simple_repeat 2 24 0 22 70 0 0 chr3 163237082 163237125 -64287453 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr3 163237739 163237760 -64286818 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr3 163238254 163238275 -64286303 + (A)n Simple_repeat Simple_repeat 1 21 0 24 0 0 0 chr3 163239636 163239660 -64284918 + AT_rich Low_complexity Low_complexity 1 24 0 207 333 17 0 chr3 163240866 163240926 -64283652 - L2 LINE L2 -7 3265 3205 260 269 244 26 chr3 163241104 163241260 -64283318 - L2 LINE L2 -215 3057 2868 339 234 86 31 chr3 163241417 163241545 -64283033 - L1ME4a LINE L1 -151 5970 5836 25 51 0 0 chr3 163242665 163242704 -64281874 + AT_rich Low_complexity Low_complexity 1 39 0 332 319 133 0 chr3 163243250 163243363 -64281215 - MIR3 SINE MIR -45 163 36 2202 109 3 0 chr3 163243458 163243751 -64280827 - AluSx SINE Alu -18 294 1 1916 142 45 9 chr3 163244088 163244419 -64280159 + MER2 DNA MER2_type 2 344 0 791 218 79 25 chr3 163245472 163245501 -64279077 - MER58A DNA MER1_type -2204 216 190 2082 134 0 3 chr3 163245501 163245800 -64278778 + AluSc SINE Alu 1 298 -11 791 218 79 25 chr3 163245800 163245972 -64278606 - MER58A DNA MER1_type -2230 190 4 4492 137 33 51 chr3 163246111 163246937 -64277641 - Tigger1 DNA MER2_type 0 2418 1608 855 144 0 0 chr3 163246983 163247108 -64277470 - FLAM_C SINE Alu -18 125 1 8911 145 48 4 chr3 163247108 163248630 -64275948 - Tigger1 DNA MER2_type -829 1589 1 21 36 0 0 chr3 163250152 163250180 -64274398 + AT_rich Low_complexity Low_complexity 1 28 0 2231 146 17 15 chr3 163250205 163250616 -64273962 + L1MB3 LINE L1 5771 6182 -1 189 94 0 0 chr3 163252956 163252988 -64271590 + (CAAAAA)n Simple_repeat Simple_repeat 5 36 0 21 0 0 0 chr3 163255857 163255878 -64268700 + AT_rich Low_complexity Low_complexity 1 21 0 2074 95 4 0 chr3 163256675 163256939 -64267639 - AluSx SINE Alu -24 288 24 1062 117 117 15 chr3 163256939 163257136 -64267442 + Tigger7 DNA MER2_type 2271 2487 0 4142 172 28 29 chr3 163258303 163258921 -64265657 + L1MB7 LINE L1 4866 5483 -701 1748 63 5 0 chr3 163258921 163259151 -64265427 - AluSp SINE Alu 0 308 78 4142 172 28 29 chr3 163259151 163259793 -64264785 + L1MB7 LINE L1 5483 6127 -57 375 200 118 0 chr3 163259797 163259882 -64264696 - AluJo SINE Alu -167 135 41 221 304 25 12 chr3 163260334 163260484 -64264094 + C-rich Low_complexity Low_complexity 2 246 0 570 287 27 7 chr3 163261335 163261485 -64263093 - MIR SINE MIR -109 153 1 281 340 122 42 chr3 163261688 163261976 -64262602 - L3 LINE CR1 -96 1481 1171 2378 62 3 13 chr3 163262637 163262945 -64261633 - AluY SINE Alu -6 305 1 225 0 0 0 chr3 163263039 163263064 -64261514 + (TAGA)n Simple_repeat Simple_repeat 2 26 0 2076 90 43 3 chr3 163263067 163263444 -64261134 - AluSp SINE Alu 0 389 1 1917 158 0 16 chr3 163263976 163264286 -64260292 - AluJo SINE Alu -7 305 1 1867 144 10 42 chr3 163264336 163264467 -64260111 + AluJb SINE Alu 1 135 -177 234 0 0 0 chr3 163264467 163264493 -64260085 + (TAA)n Simple_repeat Simple_repeat 2 27 0 2244 108 0 0 chr3 163264503 163264798 -64259780 + AluSx SINE Alu 1 295 -17 1867 144 10 42 chr3 163264798 163264961 -64259617 + AluJb SINE Alu 144 296 -16 215 273 34 23 chr3 163264976 163265064 -64259514 + MIR SINE MIR 119 207 -55 1577 170 3 14 chr3 163265962 163266256 -64258322 - AluY SINE Alu -20 291 1 848 189 0 20 chr3 163266431 163266584 -64257994 + FRAM SINE Alu 1 150 -16 23 0 0 0 chr3 163266658 163266681 -64257897 + AT_rich Low_complexity Low_complexity 1 23 0 1453 142 34 88 chr3 163266829 163267125 -64257453 + AluJo SINE Alu 1 280 -32 273 57 0 0 chr3 163267125 163267160 -64257418 + (ATG)n Simple_repeat Simple_repeat 1 35 0 1931 166 48 0 chr3 163267395 163267727 -64256851 + MER7A DNA MER2_type 1 346 0 236 336 48 35 chr3 163267789 163267959 -64256619 - MIR SINE MIR -55 207 37 337 303 82 25 chr3 163267998 163268120 -64256458 - L2 LINE L2 -8 3264 3136 2441 56 0 7 chr3 163269180 163269483 -64255095 - AluY SINE Alu -10 301 1 1658 135 39 4 chr3 163270312 163270571 -64254007 - AluSx SINE Alu -18 294 27 193 353 108 0 chr3 163271236 163271338 -64253240 - L2 LINE L2 0 3313 3201 540 278 100 43 chr3 163271446 163271676 -64252902 + MIR SINE MIR 13 255 -7 224 294 20 0 chr3 163272174 163272225 -64252353 + MIR SINE MIR 19 70 -192 827 243 142 57 chr3 163272228 163272722 -64251856 + MLT1F LTR MaLR 1 536 -6 939 205 22 0 chr3 163272726 163272911 -64251667 + MIR SINE MIR 71 259 -3 350 240 132 23 chr3 163272904 163273033 -64251545 - L2 LINE L2 0 3313 3171 * 243 284 21 32 chr3 163273033 163273128 -64251450 - L2 LINE L2 -250 3063 2970 564 169 209 17 chr3 163273599 163273776 -64250802 - L1M3 LINE L1 -404 5779 5569 260 370 239 0 chr3 163274345 163274483 -64250095 + L2 LINE L2 3102 3272 0 1650 146 73 57 chr3 163274596 163274803 -64249775 - THE1C LTR MaLR 0 375 158 2345 104 0 0 chr3 163274803 163275100 -64249478 + AluSc SINE Alu 1 297 -12 1650 146 73 57 chr3 163275100 163275261 -64249317 - THE1C LTR MaLR -217 158 1 2301 101 3 3 chr3 163275759 163276066 -64248512 - AluSq SINE Alu -6 307 1 315 221 164 29 chr3 163276588 163276692 -64247886 - L2 LINE L2 0 3313 3196 315 240 120 24 chr3 163276689 163276814 -64247764 - L2 LINE L2 -394 2920 2784 569 291 105 22 chr3 163276828 163277242 -64247336 - LTR33 LTR ERVL -2 519 1 254 111 44 0 chr3 163277253 163277298 -64247280 - MLT2C1 LTR ERVL -8 507 461 180 158 0 0 chr3 163277299 163277337 -64247241 + (TATATG)n Simple_repeat Simple_repeat 2 39 0 1774 128 31 43 chr3 163277391 163277742 -64246836 - MLT2C1 LTR ERVL -47 350 4 1483 248 45 35 chr3 163277765 163278253 -64246325 - L2 LINE L2 -565 2749 2257 180 0 0 0 chr3 163278451 163278471 -64246107 + (A)n Simple_repeat Simple_repeat 1 20 0 21 0 0 0 chr3 163279160 163279181 -64245397 + AT_rich Low_complexity Low_complexity 1 21 0 4201 126 74 21 chr3 163279199 163279866 -64244712 - MER4D LTR ERV1 0 903 190 2580 50 0 0 chr3 163279866 163280168 -64244410 - AluY SINE Alu -9 302 1 4201 126 74 21 chr3 163280168 163280255 -64244323 - MER4D LTR ERV1 -713 190 109 1607 187 107 61 chr3 163280264 163280788 -64243790 - LTR10A LTR ERV1 -61 548 1 836 81 16 0 chr3 163280788 163280902 -64243676 - MER4B LTR ERV1 -494 116 1 266 349 57 28 chr3 163280963 163281069 -64243509 + L2 LINE L2 3150 3258 -14 1138 201 167 24 chr3 163281345 163281844 -64242734 - L1ME LINE L1 -551 5613 5187 2135 183 91 68 chr3 163281844 163282474 -64242104 - LTR9B LTR ERV1 0 644 1 1138 201 167 24 chr3 163282474 163282621 -64241957 - L1ME LINE L1 -977 5187 5062 2778 171 14 16 chr3 163282621 163283137 -64241441 - MLT2B2 LTR ERVL 0 515 1 1138 201 167 24 chr3 163283137 163283230 -64241348 - L1ME LINE L1 -1102 5062 4785 3905 180 45 11 chr3 163283843 163284681 -64239897 + L1MB7 LINE L1 5306 6172 -12 22 35 0 0 chr3 163285331 163285360 -64239218 + AT_rich Low_complexity Low_complexity 1 29 0 207 0 0 0 chr3 163286059 163286082 -64238496 + (T)n Simple_repeat Simple_repeat 1 23 0 418 313 29 8 chr3 163286136 163286399 -64238179 + L1ME LINE L1 5543 5820 -301 1218 242 120 55 chr3 163286660 163288471 -64236107 + HAL1 LINE L1 61 1753 -754 1853 108 4 0 chr3 163288471 163288721 -64235857 + AluSq SINE Alu 1 251 -62 239 0 32 0 chr3 163288722 163288753 -64235825 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1218 242 120 55 chr3 163288753 163288868 -64235710 + HAL1 LINE L1 1752 2174 -333 249 293 6 48 chr3 163288889 163289056 -64235522 + HAL1 LINE L1 2265 2424 -83 2005 106 57 27 chr3 163289331 163289632 -64234946 + AluSg SINE Alu 1 310 0 2230 132 0 0 chr3 163289816 163290120 -64234458 + AluSx SINE Alu 1 304 -8 276 30 0 0 chr3 163290424 163290457 -64234121 + (CA)n Simple_repeat Simple_repeat 2 34 0 269 261 78 85 chr3 163291086 163291239 -64233339 - L2 LINE L2 -223 3049 2898 290 361 135 14 chr3 163292915 163293123 -64231455 - L3 LINE CR1 -419 1158 926 788 257 138 23 chr3 163293238 163293623 -64230955 - MLT1J2 LTR MaLR -21 429 1 242 241 161 18 chr3 163293643 163293777 -64230801 + MIR SINE MIR 25 181 -74 535 295 41 29 chr3 163293993 163294237 -64230341 - L2 LINE L2 -231 3082 2836 702 176 26 52 chr3 163294255 163294408 -64230170 + MIR SINE MIR 103 251 -11 324 333 64 40 chr3 163295101 163295554 -64229024 + L2 LINE L2 1451 1914 -1400 696 203 8 0 chr3 163296240 163296373 -64228205 + AluJo SINE Alu 1 134 -178 1231 174 28 20 chr3 163296909 163297162 -64227416 + L1MCa LINE L1 5 259 -6167 * 2447 148 52 6 chr3 163297160 163297659 -64226919 + L1MCa LINE L1 776 1297 -5129 210 197 30 0 chr3 163298328 163298394 -64226184 + T-rich Low_complexity Low_complexity 2 69 0 2407 71 3 10 chr3 163298637 163298947 -64225631 + AluSx SINE Alu 1 308 -4 2022 113 113 0 chr3 163299753 163300088 -64224490 - THE1C LTR MaLR -2 373 1 2083 130 0 0 chr3 163300578 163300870 -64223708 + AluSx SINE Alu 3 294 -18 258 348 0 0 chr3 163301832 163301924 -64222654 - MIR SINE MIR -11 251 160 531 193 48 64 chr3 163301980 163302167 -64222411 - AluJ SINE Alu -16 296 113 1656 61 5 0 chr3 163302461 163302657 -64221921 - AluSp SINE Alu -39 274 78 3029 134 23 97 chr3 163302657 163303305 -64221273 + L1MB7 LINE L1 5496 6190 6 932 143 0 0 chr3 163303305 163303438 -64221140 - AluJ SINE Alu -169 133 1 3029 134 23 97 chr3 163303438 163303473 -64221105 + L1MB7 LINE L1 6190 6125 -59 1542 169 18 18 chr3 163303473 163303746 -64220832 + AluJb SINE Alu 20 292 -20 3029 134 23 97 chr3 163303746 163303792 -64220786 + L1MB7 LINE L1 6124 6172 -12 266 228 66 108 chr3 163303872 163304039 -64220539 + MARNA DNA Mariner 285 444 -142 724 319 86 25 chr3 163305654 163306061 -64218517 + L1MC4a LINE L1 4797 5228 -918 1245 240 107 63 chr3 163306097 163306684 -64217894 + L1MC4a LINE L1 5315 5927 -1881 22 0 0 0 chr3 163307964 163307986 -64216592 + AT_rich Low_complexity Low_complexity 1 22 0 2157 186 99 71 chr3 163309238 163309998 -64214580 - Charlie1a DNA MER1_type -674 781 1 2254 123 0 0 chr3 163311754 163312063 -64212515 - AluSx SINE Alu -3 309 1 460 288 47 80 chr3 163312237 163312339 -64212239 + L1M4 LINE L1 4228 4332 -1814 1769 93 108 4 chr3 163312339 163312618 -64211960 + AluY SINE Alu 1 308 -3 460 288 47 80 chr3 163312618 163312988 -64211590 + L1M4 LINE L1 4332 4684 -1462 2396 70 13 7 chr3 163313636 163313934 -64210644 + AluY SINE Alu 1 300 -11 754 178 0 15 chr3 163313957 163314092 -64210486 + FLAM_A SINE Alu 1 133 0 2144 75 50 0 chr3 163314625 163314905 -64209673 - AluSp SINE Alu -19 294 1 22 0 0 0 chr3 163316387 163316409 -64208169 + AT_rich Low_complexity Low_complexity 1 22 0 1888 91 98 21 chr3 163316740 163317025 -64207553 + AluSg SINE Alu 1 307 -3 2414 57 3 32 chr3 163317391 163317707 -64206871 + AluSc SINE Alu 1 307 -2 372 340 44 10 chr3 163317862 163318065 -64206513 - MIR SINE MIR -49 213 4 185 0 40 0 chr3 163321731 163321756 -64202822 + (TTTTG)n Simple_repeat Simple_repeat 1 26 0 2337 59 0 0 chr3 163321760 163322033 -64202545 - AluY SINE Alu -38 273 1 21 0 0 0 chr3 163322197 163322218 -64202360 + AT_rich Low_complexity Low_complexity 1 21 0 1341 156 101 62 chr3 163322380 163322668 -64201910 + AluJb SINE Alu 2 300 -12 480 214 53 38 chr3 163323038 163323169 -64201409 + Charlie8 DNA MER1_type 38 170 -2247 394 208 47 38 chr3 163323377 163323483 -64201095 - ORSL DNA AcHobo 0 275 169 2099 113 3 10 chr3 163324049 163324370 -64200208 + AluSx SINE Alu 1 319 0 264 30 0 0 chr3 163324581 163324614 -64199964 + (TG)n Simple_repeat Simple_repeat 1 33 0 242 305 49 0 chr3 163325285 163325367 -64199211 - L1M4 LINE L1 -1979 4167 4082 2633 49 0 0 chr3 163325367 163325671 -64198907 - AluY SINE Alu -7 304 1 2094 173 135 0 chr3 163326027 163326472 -64198106 - MLT1D LTR MaLR 0 505 1 367 220 30 20 chr3 163326736 163326836 -64197742 + L2 LINE L2 3212 3312 -1 276 233 189 0 chr3 163327536 163327626 -64196952 + L2 LINE L2 3202 3308 -5 2867 128 34 2 chr3 163327959 163328428 -64196150 - L1MB3 LINE L1 -2 6181 5698 4462 134 30 48 chr3 163328591 163329390 -64195188 + LTR1 LTR ERV1 1 785 0 362 21 0 21 chr3 163329413 163329461 -64195117 + (TTGTG)n Simple_repeat Simple_repeat 2 48 0 2335 58 0 0 chr3 163329463 163329737 -64194841 - AluY SINE Alu -37 274 1 768 123 0 0 chr3 163329799 163329905 -64194673 + FRAM SINE Alu 57 162 -14 1788 146 82 28 chr3 163330353 163330709 -64193869 - THE1C LTR MaLR 0 375 1 2230 112 0 3 chr3 163331089 163331393 -64193185 + AluSg SINE Alu 1 303 -7 608 276 156 9 chr3 163331393 163331618 -64192960 + L1MC4a LINE L1 5505 5762 -2046 368 100 33 0 chr3 163331901 163331961 -64192617 - MADE1 DNA Mariner -6 74 13 7587 27 22 0 chr3 163331979 163332914 -64191664 - L1PA4 LINE L1 -1 6154 5218 418 226 29 20 chr3 163332980 163333082 -64191496 + L1MC4a LINE L1 5793 5895 -1913 2061 241 48 32 chr3 163333132 163333716 -64190862 + MLT1E LTR MaLR 1 593 0 2114 90 3 72 chr3 163334196 163334517 -64190061 - AluSq SINE Alu -14 299 1 21 36 0 0 chr3 163334867 163334895 -64189683 + AT_rich Low_complexity Low_complexity 1 28 0 1169 254 65 56 chr3 163335059 163335610 -64188968 - L1MC4a LINE L1 -1884 5924 5369 1331 143 86 14 chr3 163336007 163336287 -64188291 - MER33 DNA MER1_type 0 324 25 273 132 0 0 chr3 163336291 163336329 -64188249 + MER3 DNA MER1_type 3 40 -169 764 141 133 0 chr3 163336543 163336678 -64187900 - MER3 DNA MER1_type -23 186 34 298 276 31 0 chr3 163337218 163337316 -64187262 - L1MC4a LINE L1 -1907 5901 5801 987 271 133 35 chr3 163337328 163337893 -64186685 - L1MC4a LINE L1 -1654 6154 5535 299 175 126 104 chr3 163337883 163337907 -64186671 - L1MC4a LINE L1 -1957 5851 5829 * 1819 155 14 7 chr3 163337907 163338203 -64186375 - AluJo SINE Alu -14 298 1 299 175 126 104 chr3 163338203 163338361 -64186217 - L1MC4a LINE L1 -1979 5829 5665 187 288 219 22 chr3 163338390 163338664 -64185914 - L2 LINE L2 -355 2959 2632 204 316 101 0 chr3 163338808 163338887 -64185691 - L2 LINE L2 -65 3207 3121 213 338 0 12 chr3 163338929 163339009 -64185569 + MIR SINE MIR 21 99 -163 294 29 0 0 chr3 163339013 163339048 -64185530 + (TC)n Simple_repeat Simple_repeat 2 36 0 189 0 0 0 chr3 163339047 163339068 -64185510 + (TG)n Simple_repeat Simple_repeat 2 22 0 * 232 262 0 33 chr3 163339068 163339129 -64185449 + CT-rich Low_complexity Low_complexity 3 61 0 23 0 0 0 chr3 163339896 163339919 -64184659 + AT_rich Low_complexity Low_complexity 1 23 0 1447 193 96 23 chr3 163339931 163340284 -64184294 + MLT1B LTR MaLR 1 379 -11 1497 78 0 0 chr3 163341139 163341319 -64183259 + AluSq SINE Alu 124 303 -10 450 266 75 55 chr3 163341395 163341594 -64182984 - L1MC/D LINE L1 -2093 5715 5513 196 300 29 29 chr3 163341653 163341723 -64182855 - MIR SINE MIR -180 82 13 2359 161 56 2 chr3 163341799 163342209 -64182369 - MSTB1 LTR MaLR 0 432 1 477 280 118 61 chr3 163342269 163343109 -64181469 - L1MC/D LINE L1 -1372 4774 3887 246 320 34 20 chr3 163343191 163343338 -64181240 + L1 LINE L1 3574 3722 -2424 840 143 0 0 chr3 163343345 163343464 -64181114 + FLAM_C SINE Alu 1 119 -24 33 66 0 0 chr3 163343468 163343529 -64181049 + AT_rich Low_complexity Low_complexity 1 61 0 277 242 152 18 chr3 163343558 163343723 -64180855 + L1 LINE L1 4212 4398 -1748 426 219 76 17 chr3 163344158 163344277 -64180301 - L2 LINE L2 0 3313 3188 2070 142 0 0 chr3 163345202 163345498 -64179080 - AluSx SINE Alu -14 298 3 459 253 183 20 chr3 163346086 163346111 -64178467 - MIR SINE MIR -14 248 228 1997 128 13 20 chr3 163346111 163346415 -64178163 - AluSx SINE Alu -10 302 1 459 253 183 20 chr3 163346415 163346591 -64177987 - MIR SINE MIR -34 228 14 226 167 0 0 chr3 163346648 163346690 -64177888 + MIR SINE MIR 78 119 -89 681 239 105 79 chr3 163348463 163348843 -64175735 - L2 LINE L2 -1 3312 2923 387 293 36 7 chr3 163348857 163348997 -64175581 - MER91A DNA MER1_type -33 163 20 1197 154 85 111 chr3 163349644 163349950 -64174628 - AluJb SINE Alu -4 298 1 780 114 107 8 chr3 163350826 163350991 -64173587 + AluSg/x SINE Alu 143 320 0 302 284 106 21 chr3 163352161 163352302 -64172276 + MIR SINE MIR 96 248 -14 200 225 14 84 chr3 163352320 163352391 -64172187 + L3 LINE CR1 1510 1575 -2 234 198 164 69 chr3 163352973 163353089 -64171489 - Charlie7 DNA MER1_type -17 2595 2469 2212 125 0 0 chr3 163353337 163353640 -64170938 + AluSx SINE Alu 1 303 -9 297 0 0 0 chr3 163353897 163353930 -64170648 + (TA)n Simple_repeat Simple_repeat 1 33 0 2171 134 0 0 chr3 163353930 163354228 -64170350 - AluSx SINE Alu -14 298 1 546 155 20 27 chr3 163354327 163354475 -64170103 + CT-rich Low_complexity Low_complexity 2 148 0 2212 54 61 17 chr3 163356260 163356554 -64168024 - AluSc SINE Alu -2 307 1 300 70 0 0 chr3 163357133 163357176 -64167402 + (CA)n Simple_repeat Simple_repeat 2 44 0 186 104 42 21 chr3 163357731 163357779 -64166799 + (CCG)n Simple_repeat Simple_repeat 3 51 0 21 0 0 0 chr3 163357780 163357801 -64166777 + GC_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr3 163357982 163358024 -64166554 + GC_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr3 163362158 163362181 -64162397 + AT_rich Low_complexity Low_complexity 1 23 0 28 29 0 0 chr3 163365294 163365329 -64159249 + AT_rich Low_complexity Low_complexity 1 35 0 240 59 0 0 chr3 163365924 163365958 -64158620 + (T)n Simple_repeat Simple_repeat 1 34 0 235 154 0 0 chr3 163367678 163367717 -64156861 - MLT1K LTR MaLR -548 40 2 377 280 63 48 chr3 163368453 163368642 -64155936 + LTR33A LTR ERVL 1 192 -331 336 250 55 55 chr3 163368765 163368893 -64155685 + MLT1K LTR MaLR 454 581 -7 308 333 65 40 chr3 163369052 163369500 -64155078 + L2 LINE L2 1456 1914 -1400 250 358 32 0 chr3 163369763 163369886 -64154692 + LTR67 LTR ERVL 431 557 0 817 176 15 0 chr3 163370187 163370318 -64154260 + AluJo SINE Alu 2 134 -178 1340 176 28 20 chr3 163370852 163371107 -64153471 + L1MCa LINE L1 3 259 -6167 * 2683 150 52 6 chr3 163371105 163371606 -64152972 + L1MCa LINE L1 776 1299 -5127 210 197 30 0 chr3 163372273 163372339 -64152239 + T-rich Low_complexity Low_complexity 2 69 0 2477 65 3 7 chr3 163372582 163372888 -64151690 + AluSp SINE Alu 1 305 -8 306 0 0 0 chr3 163373527 163373561 -64151017 + (CA)n Simple_repeat Simple_repeat 1 34 0 304 241 106 148 chr3 163373663 163373974 -64150604 - L1M2 LINE L1 -5795 1054 757 310 277 92 35 chr3 163374101 163374242 -64150336 + MIR SINE MIR 24 172 -90 4092 83 2 14 chr3 163374244 163374797 -64149781 + MER41A LTR ERV1 1 546 -8 818 152 0 8 chr3 163374912 163375037 -64149541 - FLAM_C SINE Alu -19 124 1 334 160 28 85 chr3 163375120 163375226 -64149352 - Charlie5 DNA MER1_type 0 2624 2525 269 148 82 0 chr3 163375367 163375428 -64149150 - Charlie5 DNA MER1_type -119 2493 2428 355 238 129 135 chr3 163375488 163375507 -64149071 + L2 LINE L2 2967 2985 -328 4738 151 78 4 chr3 163375507 163376276 -64148302 + LTR1B LTR ERV1 1 826 0 355 238 129 135 chr3 163376276 163376372 -64148206 + L2 LINE L2 2985 3080 -233 486 155 172 35 chr3 163376372 163376488 -64148090 + FLAM_A SINE Alu 2 133 0 355 238 129 135 chr3 163376488 163376720 -64147858 + L2 LINE L2 3080 3313 0 31 26 0 0 chr3 163377485 163377523 -64147055 + AT_rich Low_complexity Low_complexity 1 38 0 348 277 113 25 chr3 163377792 163377951 -64146627 - MER5B DNA MER1_type -1 177 5 966 167 11 65 chr3 163377979 163378090 -64146488 + MER69A DNA AcHobo 2 101 -2425 2374 93 0 6 chr3 163378090 163378403 -64146175 - AluY SINE Alu 0 311 1 966 167 11 65 chr3 163378403 163378477 -64146101 + MER69A DNA AcHobo 101 177 0 1908 184 28 0 chr3 163378495 163378822 -64145756 + MER58B DNA MER1_type 6 341 0 204 300 175 8 chr3 163380040 163380160 -64144418 - MIR SINE MIR -9 253 114 1977 101 11 11 chr3 163382539 163382816 -64141762 - AluSq SINE Alu -36 277 1 2483 70 0 3 chr3 163383279 163383580 -64140998 - AluSp SINE Alu -13 300 1 189 74 0 0 chr3 163383740 163383767 -64140811 + (TAAAAA)n Simple_repeat Simple_repeat 5 31 0 721 234 145 9 chr3 163383780 163383994 -64140584 - MLT1K LTR MaLR 0 588 346 249 266 25 13 chr3 163384192 163384271 -64140307 + L1MEd LINE L1 3 82 -6037 2330 103 0 0 chr3 163384291 163384593 -64139985 + AluSx SINE Alu 1 302 -10 3416 94 8 17 chr3 163385334 163385803 -64138775 - MER1A DNA MER1_type -8 521 57 323 240 87 10 chr3 163385910 163386014 -64138564 - LTR67 LTR ERVL -10 547 436 343 259 0 69 chr3 163386370 163386486 -64138092 - L2 LINE L2 -85 3228 3121 723 301 48 5 chr3 163387371 163387580 -64136998 - L2 LINE L2 -234 3079 2862 279 281 53 35 chr3 163388244 163388358 -64136220 + L2 LINE L2 3194 3309 -4 282 29 0 0 chr3 163388359 163388394 -64136184 + (CA)n Simple_repeat Simple_repeat 1 35 0 433 235 230 25 chr3 163388554 163388758 -64135820 - MIR SINE MIR -1 261 16 2217 106 13 0 chr3 163389484 163389785 -64134793 + AluSx SINE Alu 1 305 -7 2735 212 92 73 chr3 163391007 163392002 -64132576 + MER97c DNA MER1_type? 48 1060 -30 268 329 63 19 chr3 163392852 163393010 -64131568 - MIR3 SINE MIR -32 176 12 703 254 112 13 chr3 163393273 163393497 -64131081 - MIR SINE MIR -13 249 4 2035 206 16 3 chr3 163393709 163394088 -64130490 + MLT1B LTR MaLR 3 386 -4 930 298 137 12 chr3 163394290 163394780 -64129798 - HAL1 LINE L1 -1956 551 1 288 159 0 63 chr3 163395157 163395220 -64129358 + L2 LINE L2 3214 3272 0 618 340 18 50 chr3 163395282 163395561 -64129017 - L2 LINE L2 0 3272 3003 525 152 38 0 chr3 163395571 163395650 -64128928 + L1MC1 LINE L1 28 109 -6317 1226 123 0 6 chr3 163395650 163395821 -64128757 + AluSg/x SINE Alu 131 300 -12 11541 134 102 33 chr3 163395825 163396771 -64127807 + L1MC1 LINE L1 101 981 -5445 1907 142 14 0 chr3 163396771 163397052 -64127526 + AluJb SINE Alu 1 285 -27 11541 134 102 33 chr3 163397052 163398320 -64126258 + L1MC1 LINE L1 981 2467 -3959 1470 200 29 36 chr3 163398324 163398604 -64125974 + AluJo SINE Alu 5 282 -30 11736 213 30 28 chr3 163398625 163398848 -64125730 + L1MC1 LINE L1 2452 2673 -3940 2083 120 0 13 chr3 163398848 163399147 -64125431 + AluJb SINE Alu 1 295 -17 11736 213 30 28 chr3 163399147 163399535 -64125043 + L1MC1 LINE L1 2673 3059 -3554 2232 109 7 0 chr3 163399535 163399837 -64124741 + AluSx SINE Alu 1 304 -8 11736 213 30 28 chr3 163399837 163399971 -64124607 + L1MC1 LINE L1 3059 3191 -3422 1786 160 65 0 chr3 163399971 163400264 -64124314 + AluSq SINE Alu 1 312 -1 11736 213 30 28 chr3 163400264 163400512 -64124066 + L1MC1 LINE L1 3191 3437 -3176 2265 82 31 0 chr3 163400512 163400804 -64123774 + AluY SINE Alu 1 301 -10 11736 213 30 28 chr3 163400804 163401366 -64123212 + L1MC1 LINE L1 3437 3996 -2617 2476 93 3 0 chr3 163401366 163401678 -64122900 + AluSq SINE Alu 1 313 0 11736 213 30 28 chr3 163401678 163401854 -64122724 + L1MC1 LINE L1 3996 4170 -2443 968 70 86 0 chr3 163401854 163401982 -64122596 + MER85 DNA T2_type 1 139 0 11736 213 30 28 chr3 163401982 163403969 -64120609 + L1MC1 LINE L1 4170 6183 -430 2122 112 3 3 chr3 163403972 163404266 -64120312 + AluSx SINE Alu 1 294 -18 180 0 0 0 chr3 163404266 163404286 -64120292 + (TTAAA)n Simple_repeat Simple_repeat 2 21 0 316 299 57 66 chr3 163404309 163404559 -64120019 - L2 LINE L2 -287 2985 2746 522 309 236 25 chr3 163404594 163405511 -64119067 - L2 LINE L2 -494 2820 1711 2374 115 50 19 chr3 163405578 163405942 -64118636 + THE1C LTR MaLR 1 375 0 1957 151 0 13 chr3 163405942 163406253 -64118325 + AluJb SINE Alu 3 309 -3 2236 166 34 6 chr3 163406344 163406699 -64117879 + MLT1A1 LTR MaLR 1 365 0 222 267 53 69 chr3 163406699 163406830 -64117748 + L2 LINE L2 2840 2968 -304 1312 189 41 47 chr3 163407154 163407498 -64117080 + L1MA9 LINE L1 5933 6274 -38 686 236 47 31 chr3 163407669 163407860 -64116718 - MIR SINE MIR -67 195 2 330 357 16 8 chr3 163409349 163409475 -64115103 + MIR SINE MIR 20 146 -116 288 149 64 0 chr3 163409483 163409530 -64115048 - LTR50 LTR ERVL 0 795 746 862 227 143 4 chr3 163409710 163409961 -64114617 - LTR50 LTR ERVL -509 286 1 264 336 115 0 chr3 163409966 163410079 -64114499 - MIR SINE MIR -12 250 125 750 297 92 8 chr3 163410870 163411243 -64113335 - LTR16A LTR ERVL -13 437 16 260 235 0 0 chr3 163411261 163411312 -64113266 - L2 LINE L2 -1 3271 3221 789 189 0 0 chr3 163411313 163411440 -64113138 + FLAM_C SINE Alu 1 127 -6 444 253 103 0 chr3 163411544 163411690 -64112888 + MIR SINE MIR 100 260 -2 946 287 118 33 chr3 163412836 163413376 -64111202 + MLT1K LTR MaLR 3 588 0 3338 122 101 29 chr3 163413636 163413827 -64110751 + MER51A LTR ERV1 2 178 -456 2267 84 10 17 chr3 163413827 163414124 -64110454 - AluSx SINE Alu -17 295 1 3338 122 101 29 chr3 163414124 163414514 -64110064 + MER51A LTR ERV1 178 625 -9 4318 127 26 17 chr3 163414674 163415365 -64109213 - MER50 LTR ERV1 -37 697 1 270 308 113 62 chr3 163415833 163416187 -64108391 - L2 LINE L2 0 3313 2942 385 301 139 33 chr3 163416325 163416627 -64107951 - MLT1K LTR MaLR -161 427 94 1127 162 40 31 chr3 163417076 163417087 -64107491 - L1ME LINE L1 -353 5813 5804 1992 128 3 20 chr3 163417087 163417384 -64107194 - AluSx SINE Alu -20 292 1 1127 162 40 31 chr3 163417384 163417600 -64106978 - L1ME LINE L1 -362 5804 5584 623 295 173 9 chr3 163418468 163418797 -64105781 + L2 LINE L2 2931 3313 0 2470 52 0 0 chr3 163419067 163419358 -64105220 - AluY SINE Alu -20 291 1 2159 142 0 0 chr3 163419795 163420106 -64104472 - AluSx SINE Alu -1 311 1 432 107 62 107 chr3 163420436 163420548 -64104030 + MER3 DNA MER1_type 78 184 -25 347 308 23 0 chr3 163420739 163420869 -64103709 + MIR SINE MIR 119 251 -11 374 295 103 98 chr3 163421168 163421720 -64102858 + LTR67 LTR ERVL 3 557 0 2111 130 0 0 chr3 163421830 163422123 -64102455 - AluSx SINE Alu -17 295 3 2065 113 113 0 chr3 163422612 163422947 -64101631 + THE1C LTR MaLR 1 373 -2 2277 92 0 7 chr3 163423754 163424058 -64100520 - AluSg SINE Alu -4 306 5 452 267 29 47 chr3 163427377 163427549 -64097029 - MIR SINE MIR -21 241 73 194 200 100 17 chr3 163428208 163428268 -64096310 + MIR SINE MIR 161 225 -37 * 769 259 176 6 chr3 163428264 163428600 -64095978 - L2 LINE L2 -381 2933 2541 692 173 135 19 chr3 163429248 163429404 -64095174 - MER3 DNA MER1_type -82 127 1 2058 95 4 0 chr3 163430543 163430805 -64093773 + AluSq SINE Alu 36 298 -15 1840 149 43 69 chr3 163431601 163431749 -64092829 + MLT1A1 LTR MaLR 1 151 -214 1667 164 3 40 chr3 163431749 163432047 -64092531 + AluJb SINE Alu 1 287 -25 1840 149 43 69 chr3 163432047 163432273 -64092305 + MLT1A1 LTR MaLR 151 365 0 180 0 0 0 chr3 163432329 163432349 -64092229 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 929 293 25 74 chr3 163432633 163433121 -64091457 + LTR16B LTR ERVL 1 464 0 298 330 30 10 chr3 163433175 163433275 -64091303 + L2 LINE L2 3166 3267 -5 205 156 0 0 chr3 163433275 163433307 -64091271 + GA-rich Low_complexity Low_complexity 1 32 0 254 288 0 0 chr3 163434276 163434342 -64090236 + (TA)n Simple_repeat Simple_repeat 2 67 0 312 286 71 7 chr3 163434852 163434992 -64089586 + L1ME4a LINE L1 5950 6098 -23 2219 87 0 10 chr3 163435491 163435790 -64088788 + AluY SINE Alu 1 296 -15 550 143 11 11 chr3 163435792 163435883 -64088695 + AluSq SINE Alu 141 231 -82 473 310 30 10 chr3 163436287 163436551 -64088027 - L1ME LINE L1 -301 5820 5543 198 0 0 0 chr3 163436605 163436627 -64087951 + (A)n Simple_repeat Simple_repeat 1 22 0 22 35 0 0 chr3 163437327 163437356 -64087222 + AT_rich Low_complexity Low_complexity 1 29 0 624 122 0 0 chr3 163437527 163437617 -64086961 + AluJb SINE Alu 209 298 -14 4652 222 19 38 chr3 163437617 163438001 -64086577 + L1M4 LINE L1 2395 2785 -3361 2246 112 7 0 chr3 163438001 163438304 -64086274 + AluSx SINE Alu 1 305 -7 4652 222 19 38 chr3 163438304 163438438 -64086140 + L1M4 LINE L1 2785 2920 -3226 1810 157 65 0 chr3 163438438 163438731 -64085847 + AluSq SINE Alu 1 312 -1 4652 222 19 38 chr3 163438731 163438979 -64085599 + L1M4 LINE L1 2920 3171 -2975 2336 80 30 0 chr3 163438979 163439278 -64085300 + AluY SINE Alu 1 308 -3 4652 222 19 38 chr3 163439278 163439840 -64084738 + L1M4 LINE L1 3171 3700 -2446 2296 100 0 0 chr3 163439840 163440131 -64084447 + AluSq SINE Alu 1 291 -22 396 292 57 16 chr3 163440139 163440331 -64084247 - L1ME LINE L1 -4815 1569 1370 807 159 7 0 chr3 163440337 163440475 -64084103 - AluSg/x SINE Alu -3 307 169 1007 60 0 0 chr3 163440587 163440703 -64083875 - AluY SINE Alu -195 116 1 651 115 0 0 chr3 163440703 163440790 -64083788 - MER4D LTR ERV1 -708 195 109 1810 189 107 61 chr3 163440799 163441323 -64083255 - LTR10A LTR ERV1 -61 548 1 899 81 16 0 chr3 163441323 163441437 -64083141 - MER4B LTR ERV1 -494 116 1 190 212 0 0 chr3 163441571 163441604 -64082974 + L2 LINE L2 3267 3299 -14 696 224 38 100 chr3 163442229 163442519 -64082059 - L1ME LINE L1 -5520 852 581 1527 181 21 10 chr3 163442686 163442974 -64081604 - AluJb SINE Alu -17 295 5 23 0 0 0 chr3 163443516 163443539 -64081039 + AT_rich Low_complexity Low_complexity 1 23 0 2330 102 3 3 chr3 163443643 163443956 -64080622 - AluSq SINE Alu 0 313 1 2178 63 14 7 chr3 163443966 163444252 -64080326 - AluY SINE Alu -23 288 1 1653 135 39 4 chr3 163445074 163445333 -64079245 - AluSx SINE Alu -18 294 27 462 278 100 43 chr3 163446208 163446438 -64078140 + MIR SINE MIR 13 255 -7 206 294 20 0 chr3 163446936 163446987 -64077591 + MIR SINE MIR 19 70 -192 1042 240 139 57 chr3 163446990 163447485 -64077093 + MLT1F LTR MaLR 1 536 -6 871 205 22 0 chr3 163447489 163447674 -64076904 + MIR SINE MIR 71 259 -3 305 231 141 25 chr3 163447667 163447788 -64076790 - L2 LINE L2 0 3313 3179 * 187 286 39 13 chr3 163447794 163447871 -64076707 - L2 LINE L2 -248 3065 2987 638 169 209 17 chr3 163448358 163448535 -64076043 - L1M3 LINE L1 -404 5779 5569 206 370 239 0 chr3 163449104 163449242 -64075336 + L2 LINE L2 3102 3272 0 1691 146 73 57 chr3 163449355 163449562 -64075016 - THE1C LTR MaLR 0 375 158 2357 104 0 0 chr3 163449562 163449859 -64074719 + AluSc SINE Alu 1 297 -12 1691 146 73 57 chr3 163449859 163450020 -64074558 - THE1C LTR MaLR -217 158 1 2225 121 3 3 chr3 163450518 163450825 -64073753 - AluSq SINE Alu -6 307 1 256 254 51 0 chr3 163451310 163451369 -64073209 + MIR3 SINE MIR 116 177 -31 1986 114 88 0 chr3 163451406 163451679 -64072899 - AluSx SINE Alu -15 297 1 919 176 0 6 chr3 163452355 163452514 -64072064 + FAM SINE Alu 1 158 -17 186 284 86 12 chr3 163452634 163452715 -64071863 + L3b LINE CR1 1376 1462 -121 2388 79 3 10 chr3 163452738 163453042 -64071536 - AluSp SINE Alu -11 302 1 2219 90 0 3 chr3 163453325 163453613 -64070965 - AluY SINE Alu -2 309 23 971 220 55 4 chr3 163454304 163454559 -64070019 + L1MB5 LINE L1 4443 4710 -1436 926 188 40 4 chr3 163454733 163454983 -64069595 - L1ME1 LINE L1 -6 6160 5816 2310 177 121 44 chr3 163454983 163455504 -64069074 + MLT2F LTR ERVL 1 561 -102 390 279 127 71 chr3 163457040 163457363 -64067215 - L2 LINE L2 -2 3270 2930 1699 183 10 3 chr3 163457454 163457743 -64066835 - AluJo SINE Alu -8 304 14 334 196 20 0 chr3 163457803 163457905 -64066673 + (TA)n Simple_repeat Simple_repeat 1 104 0 234 0 0 0 chr3 163457905 163457931 -64066647 + (CA)n Simple_repeat Simple_repeat 1 26 0 25 0 0 0 chr3 163458156 163458181 -64066397 + AT_rich Low_complexity Low_complexity 1 25 0 3126 244 180 34 chr3 163458765 163460229 -64064349 + L2 LINE L2 550 2228 -1086 2561 48 0 0 chr3 163461413 163461707 -64062871 - AluY SINE Alu -17 294 1 1713 152 21 10 chr3 163462745 163463035 -64061543 + AluJb SINE Alu 3 295 -17 2322 263 87 48 chr3 163463202 163464080 -64060498 + L1ME LINE L1 279 1121 -5140 2172 116 3 7 chr3 163464080 163464390 -64060188 + AluSx SINE Alu 1 309 -3 2322 263 87 48 chr3 163464390 163464596 -64059982 + L1ME LINE L1 1121 1318 -4943 2208 103 0 3 chr3 163464596 163464888 -64059690 - AluSq SINE Alu -22 291 1 2322 263 87 48 chr3 163464888 163465678 -64058900 + L1ME LINE L1 1318 2265 -3996 1477 209 88 25 chr3 163465666 163466482 -64058096 + L1MB5 LINE L1 5121 6145 -19 * 415 227 50 8 chr3 163466536 163466655 -64057923 + L1MC5 LINE L1 7790 7913 -48 536 249 157 44 chr3 163466660 163467049 -64057529 + HAL1b LINE L1 915 1347 -1 187 31 62 0 chr3 163467068 163467100 -64057478 + (TA)n Simple_repeat Simple_repeat 2 35 0 2367 87 0 3 chr3 163467827 163468126 -64056452 - AluSp SINE Alu -15 298 1 2389 90 0 0 chr3 163469487 163469788 -64054790 - AluY SINE Alu -10 301 1 1296 110 10 127 chr3 163470757 163470969 -64053609 - L1MA9 LINE L1 0 6312 6142 2319 104 0 0 chr3 163470969 163471266 -64053312 + AluSq SINE Alu 1 297 -16 1296 110 10 127 chr3 163471266 163471345 -64053233 - L1MA9 LINE L1 -170 6142 6055 1931 141 122 8 chr3 163471946 163472316 -64052262 - MSTA LTR MaLR -11 417 6 324 173 0 0 chr3 163472743 163472795 -64051783 + MIR SINE MIR 64 115 -147 1964 195 109 7 chr3 163473243 163473674 -64050904 - MLT1D LTR MaLR -8 497 23 723 296 82 45 chr3 163473948 163474509 -64050069 + L1ME3A LINE L1 5 586 -5533 1677 159 20 20 chr3 163474641 163474936 -64049642 + AluJo SINE Alu 4 298 -14 793 286 49 40 chr3 163475014 163475569 -64049009 + L1ME3A LINE L1 2130 2689 -3440 582 256 110 32 chr3 163475688 163475969 -64048609 + L1ME3A LINE L1 3560 3862 -2267 729 286 101 35 chr3 163476075 163476885 -64047693 + L1ME3A LINE L1 4379 5373 -756 404 262 194 25 chr3 163476911 163477099 -64047479 + L1ME3A LINE L1 5657 5894 -259 1726 161 33 10 chr3 163477099 163477404 -64047174 + AluSx SINE Alu 1 312 0 404 262 194 25 chr3 163477404 163477452 -64047126 + L1ME3A LINE L1 5894 5933 -220 309 281 46 52 chr3 163477988 163478141 -64046437 - L2 LINE L2 -205 3067 2916 248 308 82 6 chr3 163478299 163478481 -64046097 - L2 LINE L2 -661 2653 2458 3047 110 23 21 chr3 163479057 163479484 -64045094 - MSTC LTR MaLR 0 428 1 720 245 116 23 chr3 163480371 163480587 -64043991 + MIR SINE MIR 25 260 -2 234 0 0 0 chr3 163481327 163481353 -64043225 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 693 183 141 0 chr3 163482121 163482263 -64042315 + MER3 DNA MER1_type 41 202 -7 468 356 172 2 chr3 163482369 163482852 -64041726 - L2 LINE L2 -524 2790 2226 590 344 140 20 chr3 163483528 163484274 -64040304 - L2 LINE L2 -1078 2236 1374 2427 66 0 10 chr3 163484274 163484575 -64040003 + AluY SINE Alu 1 298 -13 590 344 140 20 chr3 163484575 163484680 -64039898 - L2 LINE L2 -1940 1374 1283 192 341 22 14 chr3 163484782 163484920 -64039658 - L2 LINE L2 -2230 1084 946 1933 113 44 7 chr3 163485653 163485954 -64038624 + AluSx SINE Alu 1 311 0 1020 215 48 0 chr3 163486150 163486359 -64038219 - MER20 DNA MER1_type 0 219 1 275 247 55 88 chr3 163488223 163488365 -64036213 + MER20B DNA MER1_type 1 137 -646 2301 107 7 0 chr3 163488365 163488674 -64035904 + AluSp SINE Alu 1 311 -2 275 247 55 88 chr3 163488674 163488713 -64035865 + MER20B DNA MER1_type 137 176 -607 285 323 27 70 chr3 163489969 163490155 -64034423 - L2 LINE L2 -962 2352 2175 969 152 0 0 chr3 163490341 163490473 -64034105 + FLAM_C SINE Alu 2 133 0 237 65 0 0 chr3 163490601 163490632 -64033946 + (GA)n Simple_repeat Simple_repeat 2 32 0 1704 141 14 14 chr3 163490664 163490941 -64033637 + AluJo SINE Alu 29 305 -7 831 170 0 22 chr3 163491837 163491972 -64032606 + FLAM_A SINE Alu 2 133 0 331 309 73 34 chr3 163492906 163493084 -64031494 - MIR3 SINE MIR -7 201 17 1936 136 52 112 chr3 163494291 163494710 -64029868 + MSTD LTR MaLR 3 396 0 261 306 0 0 chr3 163494722 163494784 -64029794 + MIR3 SINE MIR 114 175 -33 23 0 0 0 chr3 163495290 163495313 -64029265 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr3 163495471 163495498 -64029080 + AT_rich Low_complexity Low_complexity 1 27 0 564 282 42 35 chr3 163495546 163495875 -64028703 + L1MEc LINE L1 2166 2462 -3753 935 298 97 13 chr3 163495883 163496644 -64027934 + L1MEc LINE L1 2499 3323 -2892 1028 123 0 0 chr3 163496645 163496783 -64027795 - AluSq/x SINE Alu -174 138 1 274 254 51 0 chr3 163497268 163497327 -64027251 + MIR3 SINE MIR 116 177 -31 1971 114 88 0 chr3 163497364 163497637 -64026941 - AluSx SINE Alu -15 297 1 700 173 135 19 chr3 163498164 163498320 -64026258 - MER3 DNA MER1_type -82 127 1 184 219 0 0 chr3 163498451 163498483 -64026095 - MIR SINE MIR -140 68 37 1075 138 0 13 chr3 163499757 163499937 -64024641 + AluSg/x SINE Alu 127 304 0 2204 133 0 0 chr3 163501159 163501459 -64023119 + AluSx SINE Alu 1 300 -12 2458 79 0 3 chr3 163501678 163501982 -64022596 - AluSq SINE Alu -10 303 1 211 352 0 33 chr3 163502607 163502698 -64021880 - L2 LINE L2 0 3272 3185 1844 145 10 34 chr3 163502768 163503064 -64021514 + AluJo SINE Alu 1 289 -23 1970 127 7 10 chr3 163503757 163504056 -64020522 + AluJb SINE Alu 1 298 -14 186 43 0 0 chr3 163504618 163504641 -64019937 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 719 251 103 8 chr3 163505438 163505681 -64018897 - MER102a DNA MER1_type -20 310 45 719 168 0 34 chr3 163505796 163505915 -64018663 + FLAM_A SINE Alu 1 115 -18 2181 125 0 19 chr3 163505925 163506244 -64018334 - AluSq SINE Alu 0 313 1 183 184 0 0 chr3 163506259 163506297 -64018281 + A-rich Low_complexity Low_complexity 2 39 0 1218 141 0 0 chr3 163507028 163507212 -64017366 + AluSg/x SINE Alu 127 310 -2 2203 108 0 7 chr3 163507770 163508067 -64016511 - AluSx SINE Alu -17 295 1 1041 152 25 0 chr3 163508067 163508225 -64016353 - FRAM SINE Alu -12 164 3 298 294 59 44 chr3 163509262 163509398 -64015180 - L2 LINE L2 -5 3267 3139 343 243 37 9 chr3 163509424 163509531 -64015047 - MER117 DNA MER1_type -41 156 47 1834 109 0 4 chr3 163509680 163509928 -64014650 + AluSg SINE Alu 62 308 -2 753 245 160 0 chr3 163511188 163511400 -64013178 - MIR SINE MIR -2 260 15 22 56 0 0 chr3 163512318 163512354 -64012224 + AT_rich Low_complexity Low_complexity 1 36 0 2107 140 0 7 chr3 163512868 163513175 -64011403 + AluJo SINE Alu 1 305 -7 2267 113 7 0 chr3 163513293 163513595 -64010983 + AluSq SINE Alu 1 304 -9 1096 163 0 11 chr3 163514478 163514656 -64009922 + AluJb SINE Alu 49 224 -88 602 257 57 50 chr3 163514854 163515255 -64009323 + L1ME4a LINE L1 5535 5938 -183 576 100 56 0 chr3 163516102 163516262 -64008316 + (TA)n Simple_repeat Simple_repeat 1 169 0 1015 157 20 71 chr3 163516274 163516472 -64008106 - AluJo SINE Alu -44 268 81 2410 67 0 7 chr3 163517010 163517308 -64007270 + AluY SINE Alu 1 296 -15 1596 119 4 4 chr3 163517739 163517965 -64006613 - AluSg SINE Alu -23 287 62 268 0 0 0 chr3 163518830 163518863 -64005715 - L1MC3 LINE L1 -288 7497 7465 2545 182 37 25 chr3 163518919 163519513 -64005065 - L1MB7 LINE L1 -153 6031 5431 1796 156 4 88 chr3 163519529 163519649 -64004929 - L1MC3 LINE L1 -8 7777 7649 2257 71 14 0 chr3 163519649 163519930 -64004648 - AluSc SINE Alu -24 285 1 1796 156 4 88 chr3 163519930 163520264 -64004314 - L1MC3 LINE L1 -136 7649 7361 36 0 0 0 chr3 163520331 163520367 -64004211 + AT_rich Low_complexity Low_complexity 1 36 0 744 140 7 52 chr3 163520371 163520507 -64004071 - FLAM_C SINE Alu -2 131 2 316 275 21 22 chr3 163520864 163520986 -64003592 - MIR SINE MIR -80 128 1 22 35 0 0 chr3 163521349 163521378 -64003200 + AT_rich Low_complexity Low_complexity 1 29 0 294 278 98 84 chr3 163521563 163521898 -64002680 - MLT1J2 LTR MaLR 0 409 70 1870 112 0 0 chr3 163522235 163522486 -64002092 - AluSx SINE Alu -22 290 40 247 222 48 16 chr3 163522496 163522559 -64002019 - MIR SINE MIR -13 249 185 661 293 75 47 chr3 163522574 163522895 -64001683 - L3 LINE CR1 -354 1223 894 186 204 74 19 chr3 163523196 163523250 -64001328 - L2 LINE L2 -3 3269 3213 1690 211 15 0 chr3 163523289 163523625 -64000953 - MER58B DNA MER1_type 0 341 1 1830 191 0 0 chr3 163523696 163523978 -64000600 + AluJo SINE Alu 1 282 -30 670 303 60 24 chr3 163524130 163524381 -64000197 - MIR SINE MIR 0 262 3 696 209 0 8 chr3 163524962 163525096 -63999482 + FLAM_A SINE Alu 1 133 0 1893 140 24 7 chr3 163525131 163525423 -63999155 - AluSx SINE Alu -15 297 1 195 299 98 109 chr3 163525603 163525777 -63998801 + L2 LINE L2 2939 3110 -162 3395 212 21 81 chr3 163525831 163526861 -63997717 + LTR5 LTR ERVK 1 969 0 3296 134 62 7 chr3 163527332 163527949 -63996629 - Tigger3(Golem) DNA MER2_type -1 3028 2378 1153 67 13 4 chr3 163527949 163528188 -63996390 - L1PA11 LINE L1 -6 6168 5794 41 48 0 0 chr3 163528332 163528394 -63996184 + AT_rich Low_complexity Low_complexity 1 62 0 364 273 79 88 chr3 163528965 163529295 -63995283 - L1M2 LINE L1 -5647 1202 876 206 225 0 0 chr3 163529357 163529397 -63995181 + CT-rich Low_complexity Low_complexity 2 41 0 553 296 124 26 chr3 163531583 163531809 -63992769 - MIR SINE MIR -10 252 5 1239 124 54 5 chr3 163533002 163533187 -63991391 - AluSg SINE Alu -116 194 1 297 177 32 0 chr3 163533514 163533576 -63991002 + L1MB4 LINE L1 5733 5796 -366 2301 120 0 0 chr3 163534091 163534399 -63990179 + AluSx SINE Alu 1 308 -4 1134 181 52 42 chr3 163534400 163534781 -63989797 + L1MC5 LINE L1 7538 7922 -39 1639 68 36 0 chr3 163534993 163535212 -63989366 - MER30 DNA MER1_type 0 230 4 1245 159 26 0 chr3 163535706 163535933 -63988645 + L1MB4 LINE L1 5943 6175 -5 324 299 48 53 chr3 163536229 163536416 -63988162 + L2 LINE L2 2899 3084 -188 987 270 160 18 chr3 163536530 163536985 -63987593 + MLT1H1 LTR MaLR 36 555 0 282 224 40 26 chr3 163538484 163538560 -63986018 + L2 LINE L2 2199 2275 -1039 5941 43 12 8 chr3 163538562 163539406 -63985172 - L1PA3 LINE L1 -100 6055 5206 1770 256 82 69 chr3 163539554 163540704 -63983874 - L1MEc LINE L1 -4494 1902 738 * 3207 178 26 48 chr3 163540697 163540752 -63983826 - L1MB2 LINE L1 -1 6170 6115 207 0 0 0 chr3 163540752 163540775 -63983803 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 2129 105 0 49 chr3 163540776 163541081 -63983497 - AluSq SINE Alu -23 290 1 3207 178 26 48 chr3 163541081 163541541 -63983037 - L1MB2 LINE L1 -56 6115 5673 2076 159 0 0 chr3 163541541 163541842 -63982736 + AluSx SINE Alu 1 301 -11 3207 178 26 48 chr3 163541842 163542114 -63982464 - L1MB2 LINE L1 -498 5673 5397 270 194 97 0 chr3 163542168 163542230 -63982348 + Tigger5 DNA MER2_type 2250 2317 -6 444 215 0 0 chr3 163542232 163542311 -63982267 - Tigger5 DNA MER2_type -2244 79 1 1684 205 47 16 chr3 163542314 163542739 -63981839 - L1MB2 LINE L1 -743 5403 4966 1132 145 0 6 chr3 163542749 163542921 -63981657 - AluJb SINE Alu -1 311 141 1940 137 48 3 chr3 163542931 163543223 -63981355 - AluSx SINE Alu -7 305 1 599 151 126 0 chr3 163543227 163543346 -63981232 + MER58C DNA MER1_type 82 215 0 1296 216 219 0 chr3 163544476 163544819 -63979759 + MER47B DNA MER2_type 1 418 0 1217 123 0 0 chr3 163545282 163545488 -63979090 + AluSp SINE Alu 131 313 0 414 311 108 9 chr3 163545999 163546221 -63978357 - MIR SINE MIR -1 261 18 22 0 0 0 chr3 163546481 163546503 -63978075 + AT_rich Low_complexity Low_complexity 1 22 0 2121 133 3 10 chr3 163546656 163546958 -63977620 - AluSq SINE Alu -13 300 1 23 33 0 0 chr3 163547076 163547106 -63977472 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 163547172 163547193 -63977385 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 163547268 163547291 -63977287 + AT_rich Low_complexity Low_complexity 1 23 0 1395 172 13 42 chr3 163547362 163547670 -63976908 + AluSx SINE Alu 3 301 -1 13068 183 25 38 chr3 163547833 163548194 -63976384 - L1PB1 LINE L1 -5 6862 6498 316 57 0 38 chr3 163548194 163548247 -63976331 + (TA)n Simple_repeat Simple_repeat 2 52 0 13068 183 25 38 chr3 163548247 163548698 -63975880 - L1PB1 LINE L1 -369 6498 6042 2264 100 3 0 chr3 163548698 163548997 -63975581 - AluSp SINE Alu -13 300 1 13068 183 25 38 chr3 163548997 163551252 -63973326 - L1PB1 LINE L1 -825 6042 3866 2505 65 0 7 chr3 163551252 163551560 -63973018 - AluY SINE Alu -5 306 1 13068 183 25 38 chr3 163551560 163553521 -63971057 - L1PB1 LINE L1 -3001 3866 1880 234 0 0 0 chr3 163553529 163553555 -63971023 + (TTG)n Simple_repeat Simple_repeat 2 27 0 841 154 0 0 chr3 163553562 163553685 -63970893 - AluSq/x SINE Alu -189 123 1 2777 122 9 2 chr3 163553700 163554159 -63970419 - L1PB1 LINE L1 -4992 1871 1410 444 19 0 0 chr3 163554166 163554219 -63970359 + (TG)n Simple_repeat Simple_repeat 2 54 0 2203 110 0 7 chr3 163554232 163554524 -63970054 - AluSc SINE Alu -19 290 1 2293 111 0 3 chr3 163554524 163554830 -63969748 - AluSg SINE Alu -5 305 1 1444 190 3 28 chr3 163555050 163555334 -63969244 - AluJo SINE Alu -35 277 1 1581 173 23 40 chr3 163556334 163556517 -63968061 - AluJo SINE Alu -16 296 118 2139 120 0 13 chr3 163556517 163556818 -63967760 + AluSx SINE Alu 1 297 -15 1581 173 23 40 chr3 163556818 163556935 -63967643 - AluJo SINE Alu -194 118 1 621 256 206 51 chr3 163557162 163557595 -63966983 + L2 LINE L2 2810 3309 -4 284 300 128 44 chr3 163560425 163560605 -63963973 - MIR SINE MIR -38 224 30 485 172 129 9 chr3 163560966 163561082 -63963496 + MER106B DNA MER1_type 899 1028 -31 544 280 41 53 chr3 163561233 163561476 -63963102 + MLT1L LTR MaLR 366 605 -10 2127 94 0 3 chr3 163561664 163561962 -63962616 - AluY SINE Alu -14 297 1 21 36 0 0 chr3 163561964 163561992 -63962586 + AT_rich Low_complexity Low_complexity 1 28 0 220 318 57 23 chr3 163562244 163562332 -63962246 + MER5B DNA MER1_type 68 158 -20 2139 92 0 0 chr3 163562940 163563254 -63961324 + AluY SINE Alu 1 314 0 876 197 27 5 chr3 163563368 163563556 -63961022 - MIR SINE MIR -12 250 59 281 336 200 0 chr3 163563683 163563823 -63960755 + L2 LINE L2 3103 3270 -2 328 251 314 6 chr3 163563907 163564082 -63960496 + MIR SINE MIR 34 262 0 265 318 115 44 chr3 163564549 163564939 -63959639 + L2 LINE L2 2329 2746 -568 229 336 134 20 chr3 163565614 163565763 -63958815 + MIR3 SINE MIR 21 186 -22 2436 65 0 31 chr3 163566528 163566849 -63957729 + AluY SINE Alu 1 311 0 24 32 0 0 chr3 163567302 163567333 -63957245 + AT_rich Low_complexity Low_complexity 1 31 0 249 286 38 29 chr3 163567716 163567821 -63956757 - MIR SINE MIR -53 209 104 2399 78 3 3 chr3 163567890 163568196 -63956382 + AluSq SINE Alu 1 306 -7 198 283 79 79 chr3 163568491 163568668 -63955910 + L2 LINE L2 3119 3295 -18 1981 69 73 28 chr3 163569893 163570182 -63954396 - AluSq SINE Alu -11 302 1 2138 107 3 10 chr3 163573060 163573360 -63951218 + AluSx SINE Alu 1 298 -14 1804 278 17 30 chr3 163573511 163574037 -63950541 + L1MEd LINE L1 6 524 -5595 787 251 47 40 chr3 163574036 163574483 -63950095 + L1MEd LINE L1 786 1235 -4884 * 959 125 0 7 chr3 163574486 163574630 -63949948 + FLAM_C SINE Alu 1 143 0 189 223 21 128 chr3 163575636 163575730 -63948848 + L2 LINE L2 2872 2955 -359 27 29 0 0 chr3 163576104 163576138 -63948440 + AT_rich Low_complexity Low_complexity 1 34 0 284 143 22 44 chr3 163576580 163576671 -63947907 + CT-rich Low_complexity Low_complexity 1 89 0 22 0 0 0 chr3 163576969 163576991 -63947587 + AT_rich Low_complexity Low_complexity 1 22 0 273 57 0 0 chr3 163577316 163577351 -63947227 + (TATG)n Simple_repeat Simple_repeat 2 36 0 211 189 0 0 chr3 163577821 163577858 -63946720 + (TG)n Simple_repeat Simple_repeat 2 38 0 378 324 97 11 chr3 163578062 163578238 -63946340 - MIR SINE MIR -52 210 20 946 162 122 10 chr3 163578516 163578713 -63945865 + MER20 DNA MER1_type 1 219 0 202 247 169 0 chr3 163578828 163578905 -63945673 - MIR SINE MIR 0 262 173 2320 72 3 10 chr3 163578971 163579262 -63945316 - AluSp SINE Alu -24 289 1 777 185 62 0 chr3 163579262 163579408 -63945170 - MIR SINE MIR -101 161 7 318 357 36 18 chr3 163579538 163579818 -63944760 - L2 LINE L2 -457 2857 2573 1913 124 77 13 chr3 163579870 163580169 -63944409 + MER1B DNA MER1_type 22 339 0 23 33 0 0 chr3 163581179 163581209 -63943369 + AT_rich Low_complexity Low_complexity 1 30 0 2293 98 0 0 chr3 163581869 163582165 -63942413 + AluSx SINE Alu 1 296 -16 685 271 84 17 chr3 163584307 163584606 -63939972 + L1ME4a LINE L1 5563 5881 -240 245 264 0 96 chr3 163584642 163584767 -63939811 + L1ME4a LINE L1 5956 6068 -53 1844 126 4 0 chr3 163585386 163585655 -63938923 + AluSx SINE Alu 37 306 -6 251 289 13 40 chr3 163585657 163585733 -63938845 - L3 LINE CR1 -77 1500 1427 1420 184 3 20 chr3 163585733 163586026 -63938552 - AluSp SINE Alu -5 308 21 31 0 0 0 chr3 163586071 163586102 -63938476 + AT_rich Low_complexity Low_complexity 1 31 0 603 68 23 0 chr3 163586770 163586858 -63937720 + AluY SINE Alu 205 294 -17 307 193 127 73 chr3 163587191 163587341 -63937237 + L1ME4a LINE L1 5963 6120 -1 3294 116 68 16 chr3 163588226 163588795 -63935783 + Tigger3b DNA MER2_type 1 599 -632 4979 74 13 0 chr3 163588795 163589929 -63934649 + L1PA7 LINE L1 4711 5853 -301 194 317 98 24 chr3 163590358 163590481 -63934097 + L2 LINE L2 3109 3240 -32 257 239 64 28 chr3 163590503 163590612 -63933966 - L1ME4a LINE L1 -49 6072 5960 1743 116 0 0 chr3 163591025 163591258 -63933320 + AluSx SINE Alu 3 235 -77 180 0 0 0 chr3 163591267 163591287 -63933291 + (A)n Simple_repeat Simple_repeat 1 20 0 1678 186 33 17 chr3 163591353 163591654 -63932924 + AluJb SINE Alu 1 306 -6 820 42 0 50 chr3 163591967 163592087 -63932491 + L1PA5 LINE L1 6041 6154 0 191 328 53 49 chr3 163592255 163592499 -63932079 - L2 LINE L2 -2582 732 488 2229 106 0 7 chr3 163592682 163592983 -63931595 + AluSq SINE Alu 2 300 -13 2407 203 75 44 chr3 163593329 163593899 -63930679 - L1ME1 LINE L1 -43 6123 5527 2523 53 0 0 chr3 163593899 163594199 -63930379 - AluY SINE Alu -11 300 1 2407 203 75 44 chr3 163594199 163594308 -63930270 - L1ME1 LINE L1 -639 5527 5423 383 158 37 0 chr3 163594319 163594401 -63930177 - L1MB4 LINE L1 0 6180 6096 14803 165 37 53 chr3 163594436 163594856 -63929722 - L1MA5 LINE L1 -306 7413 6988 3771 51 33 8 chr3 163594856 163595365 -63929213 + L1PA8 LINE L1 5649 6170 -2 1783 84 40 30 chr3 163595367 163595664 -63928914 - L1MA2 LINE L1 -6 6298 5999 14803 165 37 53 chr3 163595664 163596216 -63928362 - L1MA5 LINE L1 -732 6987 6428 7076 51 9 29 chr3 163596216 163597418 -63927160 - L1PA5 LINE L1 0 6154 4962 1757 60 125 12 chr3 163597418 163597666 -63926912 - AluY SINE Alu -35 276 1 14803 165 37 53 chr3 163597666 163598360 -63926218 - L1MA5 LINE L1 -1290 6429 5725 207 0 0 0 chr3 163598360 163598383 -63926195 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 14803 165 37 53 chr3 163598383 163599574 -63925004 - L1MA5 LINE L1 -1994 5725 4516 2093 143 0 0 chr3 163599574 163599875 -63924703 - AluJb SINE Alu -11 301 1 14803 165 37 53 chr3 163599875 163599968 -63924610 - L1MA5 LINE L1 -3203 4516 4423 2216 103 10 0 chr3 163599968 163600268 -63924310 - AluSx SINE Alu -9 303 1 14803 165 37 53 chr3 163600268 163601436 -63923142 - L1MA5 LINE L1 -3296 4423 3343 371 98 0 0 chr3 163601448 163601499 -63923079 + Alu SINE Alu 241 291 -9 408 88 0 0 chr3 163601499 163601556 -63923022 + (TA)n Simple_repeat Simple_repeat 2 58 0 349 217 70 42 chr3 163601560 163601703 -63922875 - L1MA5 LINE L1 -4226 3339 3193 3027 230 21 18 chr3 163601704 163602544 -63922034 - L1MA5 LINE L1 -4324 3241 2399 * 3109 192 63 7 chr3 163602541 163603626 -63920952 + L1P4 LINE L1 4323 5531 -637 1523 208 40 29 chr3 163603623 163603700 -63920878 - L1M4 LINE L1 -1349 4797 4722 * 3332 45 34 27 chr3 163603700 163603934 -63920644 + MLT2A1 LTR ERVL 1 241 -203 1888 136 70 0 chr3 163603934 163604220 -63920358 - AluSx SINE Alu -6 306 1 3332 45 34 27 chr3 163604220 163604426 -63920152 + MLT2A1 LTR ERVL 241 444 0 1523 208 40 29 chr3 163604426 163604800 -63919778 - L1M4 LINE L1 -1424 4722 4341 451 216 94 34 chr3 163604831 163605083 -63919495 - L1MEc LINE L1 -805 6152 3589 201 114 45 0 chr3 163605105 163605149 -63919429 + (TA)n Simple_repeat Simple_repeat 2 47 0 261 243 43 0 chr3 163605150 163605220 -63919358 - L1MB8 LINE L1 -27 6151 6079 * 643 164 123 8 chr3 163605218 163605340 -63919238 - L1MB7 LINE L1 -136 6859 6724 415 211 24 32 chr3 163605336 163605585 -63918993 - L1MB7 LINE L1 -785 6204 5888 * 1015 236 98 3 chr3 163605589 163606330 -63918248 - L1MEc LINE L1 -3354 3603 2791 494 280 106 20 chr3 163606382 163606675 -63917903 - L1MEc LINE L1 -4452 2686 2369 645 208 7 7 chr3 163606677 163606826 -63917752 - L1MB8 LINE L1 -9 6169 6021 3207 201 56 54 chr3 163606826 163606906 -63917672 - L1MB7 LINE L1 -3049 3908 3830 674 213 0 0 chr3 163606906 163607033 -63917545 - FLAM_C SINE Alu -6 127 1 3207 201 56 54 chr3 163607033 163607634 -63916944 - L1MB7 LINE L1 -3127 3830 3242 2217 119 3 0 chr3 163607634 163607937 -63916641 - AluSx SINE Alu -8 304 1 3207 201 56 54 chr3 163607937 163608330 -63916248 - L1MB7 LINE L1 -3715 3242 2851 2208 177 34 5 chr3 163608367 163608770 -63915808 - MSTB LTR MaLR -13 419 1 829 148 15 0 chr3 163608879 163609014 -63915564 - FLAM_C SINE Alu -5 138 2 278 227 0 15 chr3 163609017 163609083 -63915495 - L1MB7 LINE L1 -4241 2718 2654 2154 259 26 6 chr3 163609349 163609991 -63914587 - L1MEc LINE L1 -4633 2326 1672 1485 193 28 111 chr3 163609991 163610055 -63914523 - MLT1B LTR MaLR 0 390 322 2028 106 39 7 chr3 163610055 163610337 -63914241 + AluSx SINE Alu 1 291 -21 1485 193 28 111 chr3 163610337 163610697 -63913881 - MLT1B LTR MaLR -68 322 1 330 120 0 0 chr3 163610697 163610757 -63913821 - L1MB7 LINE L1 -4795 2083 1627 828 109 0 0 chr3 163610763 163610873 -63913705 - AluSg/x SINE Alu -21 291 182 671 196 13 6 chr3 163610898 163611056 -63913522 + L1M4b LINE L1 1465 1623 -5236 958 158 40 102 chr3 163611094 163611398 -63913180 - L1MB7 LINE L1 -5382 1477 1193 280 173 37 25 chr3 163611396 163611477 -63913101 - L1MB7 LINE L1 -5457 1402 1321 * 331 329 53 35 chr3 163611769 163611964 -63912614 - L1M4 LINE L1 -5603 1344 812 245 264 19 38 chr3 163612197 163612303 -63912275 - L1M4 LINE L1 -6737 122 19 324 256 61 68 chr3 163612849 163612897 -63911681 + L1MC/D LINE L1 5187 5234 -932 1891 132 7 0 chr3 163612897 163613169 -63911409 + AluSx SINE Alu 20 293 -19 324 256 61 68 chr3 163613169 163613448 -63911130 + L1MC/D LINE L1 5234 5526 -640 322 214 30 41 chr3 163613499 163613613 -63910965 + L1MC/D LINE L1 5644 5760 -424 36 70 0 0 chr3 163613883 163613954 -63910624 + AT_rich Low_complexity Low_complexity 1 71 0 2365 84 0 0 chr3 163614166 163614463 -63910115 + AluSc SINE Alu 3 299 -10 22 70 0 0 chr3 163614518 163614561 -63910017 + AT_rich Low_complexity Low_complexity 1 43 0 1515 176 45 0 chr3 163614573 163614840 -63909738 + AluJo SINE Alu 3 281 -31 26 74 0 0 chr3 163615065 163615119 -63909459 + AT_rich Low_complexity Low_complexity 1 54 0 286 367 54 7 chr3 163616674 163616821 -63907757 - MIR3 SINE MIR -1 207 54 1911 94 59 7 chr3 163617403 163617689 -63906889 - AluSx SINE Alu -11 301 1 338 311 41 8 chr3 163618610 163618732 -63905846 + MIR SINE MIR 1 126 -136 23 54 0 0 chr3 163618812 163618849 -63905729 + AT_rich Low_complexity Low_complexity 1 37 0 1314 181 48 221 chr3 163619969 163620634 -63903944 - MLT1G LTR MaLR 0 590 41 628 245 83 46 chr3 163620950 163621191 -63903387 + MER2 DNA MER2_type 95 344 -1 1079 215 84 8 chr3 163621856 163622093 -63902485 - MIR SINE MIR 0 262 8 2151 93 4 0 chr3 163623036 163623343 -63901235 - AluSg SINE Alu 0 308 1 1241 326 96 37 chr3 163625774 163626677 -63897901 - L2 LINE L2 -195 3077 2121 1119 224 90 59 chr3 163627789 163628350 -63896228 - L2 LINE L2 0 3313 2739 635 256 0 7 chr3 163628460 163628597 -63895981 - L2 LINE L2 -1047 2267 2132 418 321 0 0 chr3 163628599 163628733 -63895845 + (TG)n Simple_repeat Simple_repeat 1 134 0 375 335 37 43 chr3 163629331 163629519 -63895059 - MIR SINE MIR -26 236 50 21 57 0 0 chr3 163629767 163629802 -63894776 + AT_rich Low_complexity Low_complexity 1 35 0 640 192 15 15 chr3 163630210 163630340 -63894238 + MER94 DNA DNA 1 130 -4 26 30 0 0 chr3 163630533 163630566 -63894012 + AT_rich Low_complexity Low_complexity 1 33 0 33 43 0 0 chr3 163630614 163630661 -63893917 + AT_rich Low_complexity Low_complexity 1 47 0 203 361 19 77 chr3 163631426 163631581 -63892997 - MIR3 SINE MIR -21 187 42 548 218 113 0 chr3 163631931 163632064 -63892514 - MER103 DNA DNA -10 156 9 956 220 75 16 chr3 163632356 163632865 -63891713 + L1MEc LINE L1 36 724 -5672 1423 364 85 19 chr3 163632869 163633716 -63890862 + L1MEc LINE L1 878 1780 -4616 1372 180 16 16 chr3 163633925 163634181 -63890397 - MIR SINE MIR 0 262 7 591 174 139 0 chr3 163634569 163634684 -63889894 - Tigger1 DNA MER2_type -2287 131 1 337 235 25 12 chr3 163635615 163635696 -63888882 + MIR SINE MIR 171 252 -10 328 298 44 0 chr3 163635971 163636085 -63888493 - MER5A DNA MER1_type 0 189 71 218 248 159 18 chr3 163635995 163636108 -63888470 + MER5A DNA MER1_type 39 167 -22 * 247 223 196 34 chr3 163636397 163636545 -63888033 - L2 LINE L2 -209 3063 2892 1366 199 33 11 chr3 163637456 163637732 -63886846 + AluJo SINE Alu 1 282 -30 24 32 0 0 chr3 163637732 163637763 -63886815 + AT_rich Low_complexity Low_complexity 1 31 0 1961 139 20 7 chr3 163638567 163638869 -63885709 + AluSx SINE Alu 1 306 -6 391 117 17 0 chr3 163639140 163639200 -63885378 + U7 snRNA snRNA 2 62 -1 29 0 0 0 chr3 163639204 163639233 -63885345 + AT_rich Low_complexity Low_complexity 1 29 0 335 252 61 53 chr3 163639235 163639366 -63885212 - L1ME LINE L1 -373 5748 5614 411 253 170 0 chr3 163640544 163640665 -63883913 - MER20B DNA MER1_type -24 195 55 1380 273 58 15 chr3 163640925 163641563 -63883015 - L2 LINE L2 -29 3284 2617 439 266 72 0 chr3 163641566 163641705 -63882873 - L2 LINE L2 -525 2789 2641 25 51 0 0 chr3 163642210 163642249 -63882329 + AT_rich Low_complexity Low_complexity 1 39 0 342 299 43 26 chr3 163642639 163642756 -63881822 + L2 LINE L2 3193 3311 -2 1970 128 30 10 chr3 163642759 163643055 -63881523 + AluSx SINE Alu 1 302 -10 369 0 0 0 chr3 163643064 163643105 -63881473 + (CA)n Simple_repeat Simple_repeat 2 42 0 1715 196 54 5 chr3 163643329 163643697 -63880881 - MER58D DNA MER1_type 0 386 1 21 71 0 0 chr3 163644801 163644843 -63879735 + AT_rich Low_complexity Low_complexity 1 42 0 3923 154 28 48 chr3 163645868 163645979 -63878599 + MER44D DNA MER2_type 1 113 -2374 819 189 19 6 chr3 163645979 163646138 -63878440 - FRAM SINE Alu -4 162 2 3923 154 28 48 chr3 163646138 163646773 -63877805 + MER44D DNA MER2_type 113 604 -1 655 173 58 7 chr3 163646797 163646936 -63877642 + L1ME LINE L1 5675 5820 -346 291 146 49 163 chr3 163646936 163647059 -63877519 - MLT2F LTR ERVL 0 663 555 7210 35 6 4 chr3 163647186 163648101 -63876477 - L1P LINE L1 -888 5258 4343 1317 195 77 18 chr3 163648109 163648381 -63876197 - AluJo SINE Alu -14 288 1 729 206 230 14 chr3 163648716 163648925 -63875653 - MIR SINE MIR -7 255 2 1144 242 90 22 chr3 163650327 163650728 -63873850 + MER110A LTR ERV1 41 468 0 1907 103 3 67 chr3 163651332 163651682 -63872896 + AluSx SINE Alu 2 332 0 21 0 0 0 chr3 163654769 163654790 -63869788 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 163654910 163654933 -63869645 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3 163655258 163655286 -63869292 + AT_rich Low_complexity Low_complexity 1 28 0 183 367 41 10 chr3 163655416 163655514 -63869064 - MIR SINE MIR -57 205 105 2065 105 7 0 chr3 163658060 163658372 -63866206 - AluSx SINE Alu 0 318 5 360 0 0 0 chr3 163659003 163659043 -63865535 + (TAA)n Simple_repeat Simple_repeat 2 41 0 414 289 101 16 chr3 163659811 163660125 -63864453 - L1MC4a LINE L1 -336 5785 5588 353 254 82 0 chr3 163660876 163660986 -63863592 + L1ME4a LINE L1 5311 5429 -2379 456 271 114 7 chr3 163661003 163661276 -63863302 + L1ME4a LINE L1 5526 5827 -294 2046 69 0 56 chr3 163661277 163661460 -63863118 + L1PA8 LINE L1 5886 6048 -124 2072 113 3 3 chr3 163661460 163661766 -63862812 + AluSg SINE Alu 1 306 0 2046 69 0 56 chr3 163661766 163661885 -63862693 + L1PA8 LINE L1 6048 6172 0 2277 64 4 4 chr3 163662600 163662904 -63861674 - AluY SINE Alu 0 304 1 2455 97 14 3 chr3 163663023 163663374 -63861204 + THE1A LTR MaLR 1 355 0 1150 129 134 5 chr3 163663573 163663782 -63860796 - MER46A DNA MER2_type 0 236 1 2117 109 3 0 chr3 163664809 163665140 -63859438 + AluSp SINE Alu 1 332 0 436 262 134 0 chr3 163665519 163665667 -63858911 + MIR SINE MIR 45 210 -52 2769 220 60 34 chr3 163666306 163667658 -63856920 - L1ME1 LINE L1 -9 6226 4824 1524 215 3 16 chr3 163667658 163667970 -63856608 + AluJo SINE Alu 1 308 -4 2769 220 60 34 chr3 163667970 163668226 -63856352 - L1ME1 LINE L1 -1411 4824 4576 1353 115 0 83 chr3 163668235 163668453 -63856125 - AluSc SINE Alu -22 287 88 936 243 45 10 chr3 163668455 163668768 -63855810 - L1ME1 LINE L1 -4098 2298 1975 343 147 42 13 chr3 163668768 163668853 -63855725 + FRAM/FAM SINE Alu 6 83 -92 225 294 15 15 chr3 163669292 163669360 -63855218 + L2 LINE L2 3205 3272 0 2022 127 9 40 chr3 163670502 163670824 -63853754 + AluSx SINE Alu 1 312 0 227 284 52 45 chr3 163671717 163671851 -63852727 - Charlie8 DNA MER1_type -2145 272 138 429 278 26 53 chr3 163672232 163672383 -63852195 + L2 LINE L2 2199 2345 -969 260 195 228 89 chr3 163672475 163672563 -63852015 - MIR SINE MIR -121 141 30 2377 87 0 0 chr3 163672563 163672863 -63851715 - AluY SINE Alu -11 300 1 260 195 228 89 chr3 163672863 163672897 -63851681 - MIR SINE MIR -232 30 2 1749 25 0 0 chr3 163673140 163673342 -63851236 + L1PA3 LINE L1 5951 6152 -3 480 214 175 0 chr3 163673711 163673814 -63850764 + FLAM_A SINE Alu 1 121 -12 22 35 0 0 chr3 163673814 163673843 -63850735 + AT_rich Low_complexity Low_complexity 1 29 0 816 183 16 60 chr3 163673958 163674209 -63850369 - AluSx SINE Alu -15 297 58 1724 162 10 20 chr3 163674753 163675049 -63849529 + AluSx SINE Alu 1 293 -19 2175 110 0 13 chr3 163675053 163675362 -63849216 + AluSc SINE Alu 5 309 0 2330 93 0 10 chr3 163675703 163676013 -63848565 + AluSx SINE Alu 1 307 -5 184 330 96 17 chr3 163676643 163676758 -63847820 - L2 LINE L2 -244 3069 2946 1919 146 12 58 chr3 163676759 163676899 -63847679 + L1MB7 LINE L1 5436 5581 -597 1091 82 0 180 chr3 163676899 163677132 -63847446 - 7SK RNA RNA 0 193 3 1919 146 12 58 chr3 163677132 163677402 -63847176 + L1MB7 LINE L1 5581 5827 -351 1035 202 73 23 chr3 163677403 163677621 -63846957 + AluJo SINE Alu 1 229 -83 1796 170 25 6 chr3 163677623 163677982 -63846596 + L1MB7 LINE L1 5814 6179 -5 259 277 0 32 chr3 163677996 163678090 -63846488 + L1ME3 LINE L1 6040 6130 -32 2466 73 0 3 chr3 163678091 163678394 -63846184 + AluY SINE Alu 1 302 -9 751 239 18 18 chr3 163678434 163678656 -63845922 + L1ME3 LINE L1 5934 6155 -7 593 217 66 12 chr3 163679391 163679557 -63845021 + MER104 DNA MER2_type 5 179 -1 512 335 76 45 chr3 163680226 163680843 -63843735 + L2 LINE L2 2682 3312 -1 24 53 0 0 chr3 163680859 163680897 -63843681 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr3 163681353 163681374 -63843204 + AT_rich Low_complexity Low_complexity 1 21 0 898 182 0 13 chr3 163681547 163681701 -63842877 + FRAM SINE Alu 24 175 -1 2233 115 3 0 chr3 163681833 163682128 -63842450 + AluSq SINE Alu 1 296 -17 462 106 0 0 chr3 163683221 163683287 -63841291 - AluSc SINE Alu -11 298 233 2346 83 0 0 chr3 163683311 163683600 -63840978 - AluSc SINE Alu -20 289 1 359 238 89 10 chr3 163683602 163683703 -63840875 - MIR SINE MIR -70 192 84 4664 130 67 8 chr3 163683725 163684580 -63839998 + L1MB3 LINE L1 5279 6183 0 1275 183 14 9 chr3 163687075 163687288 -63837290 - AluJo SINE Alu -69 243 30 395 288 142 29 chr3 163687415 163687500 -63837078 - L1ME4a LINE L1 -70 6051 5977 2094 120 0 19 chr3 163687500 163687808 -63836770 - AluSx SINE Alu -10 302 1 395 288 142 29 chr3 163687808 163688139 -63836439 - L1ME4a LINE L1 -144 5977 5588 5096 52 3 9 chr3 163688158 163688799 -63835779 - L1PA7 LINE L1 -4 6150 5514 531 15 0 0 chr3 163688802 163688869 -63835709 - MER41B LTR ERV1 -88 547 481 21 0 0 0 chr3 163689068 163689089 -63835489 + GC_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr3 163689089 163689116 -63835462 + AT_rich Low_complexity Low_complexity 1 27 0 659 232 76 22 chr3 163689216 163689334 -63835244 - L1 LINE L1 -1188 4958 4848 315 0 0 0 chr3 163689334 163689369 -63835209 + (TG)n Simple_repeat Simple_repeat 2 36 0 659 232 76 22 chr3 163689369 163689526 -63835052 - L1 LINE L1 -1298 4848 4668 2277 113 7 0 chr3 163689535 163689836 -63834742 - AluSq SINE Alu -10 303 1 2027 148 3 0 chr3 163689857 163690167 -63834411 - AluSx SINE Alu -1 311 1 1052 215 25 77 chr3 163690211 163690333 -63834245 - L1MEc LINE L1 -5644 752 625 1058 199 34 0 chr3 163690333 163690539 -63834039 + MER20 DNA MER1_type 4 216 -3 1052 215 25 77 chr3 163690539 163690769 -63833809 - L1MEc LINE L1 -5771 625 418 304 242 98 52 chr3 163690769 163690806 -63833772 - MIR SINE MIR -30 232 198 2353 83 0 20 chr3 163690806 163691107 -63833471 + AluSg SINE Alu 1 295 -15 304 242 98 52 chr3 163691107 163691222 -63833356 - MIR SINE MIR -64 198 73 198 268 0 18 chr3 163691732 163691788 -63832790 - MIR SINE MIR -50 212 158 338 302 0 21 chr3 163691882 163691978 -63832600 + (CA)n Simple_repeat Simple_repeat 2 95 0 317 233 50 29 chr3 163691997 163692122 -63832456 - MIR SINE MIR -63 145 24 1571 162 43 43 chr3 163692376 163692679 -63831899 + AluJb SINE Alu 1 303 -9 305 182 18 0 chr3 163693077 163693132 -63831446 - MIR3 SINE MIR -36 172 117 1312 296 73 8 chr3 163693178 163693809 -63830769 + Charlie7 DNA MER1_type 51 722 -1890 243 298 186 16 chr3 163693831 163693955 -63830623 + MIR SINE MIR 100 244 -18 222 37 0 0 chr3 163694302 163694329 -63830249 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 2037 134 3 0 chr3 163694329 163694613 -63829965 - AluJo SINE Alu -26 286 2 21 0 0 0 chr3 163694688 163694709 -63829869 + AT_rich Low_complexity Low_complexity 1 21 0 1097 189 0 0 chr3 163697185 163697360 -63827218 + FAM SINE Alu 1 175 0 726 257 47 19 chr3 163697799 163698056 -63826522 + L1ME1 LINE L1 5898 6161 -5 349 280 98 85 chr3 163698077 163698395 -63826183 + L3 LINE CR1 1251 1572 -5 372 257 57 0 chr3 163698781 163698921 -63825657 - L1ME4a LINE L1 -287 5834 5687 2064 128 7 7 chr3 163699265 163699569 -63825009 - AluSx SINE Alu -8 304 1 2483 218 48 36 chr3 163699989 163700607 -63823971 + MLT1E2 LTR MaLR 1 626 0 2141 133 0 0 chr3 163700983 163701276 -63823302 - AluSx SINE Alu -19 293 1 324 265 20 31 chr3 163701302 163701400 -63823178 - MER5A DNA MER1_type -28 161 65 1995 125 4 0 chr3 163702070 163702349 -63822229 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr3 163702349 163702370 -63822208 + (TAA)n Simple_repeat Simple_repeat 2 22 0 809 253 5 11 chr3 163702942 163703132 -63821446 - MER5A DNA MER1_type 0 189 1 2331 99 0 7 chr3 163704695 163704999 -63819579 + AluSx SINE Alu 1 302 -10 429 256 65 12 chr3 163705024 163705192 -63819386 + L1ME3A LINE L1 5968 6144 -26 7072 37 7 0 chr3 163905822 163907191 -63617387 + L1PA4 LINE L1 4775 6153 -2 222 236 0 0 chr3 163909573 163909628 -63614950 + (CATATA)n Simple_repeat Simple_repeat 3 57 0 26 30 0 0 chr3 163909956 163909989 -63614589 + AT_rich Low_complexity Low_complexity 1 33 0 198 191 0 0 chr3 163910412 163910459 -63614119 + (CTCA)n Simple_repeat Simple_repeat 1 47 0 521 259 37 6 chr3 163910567 163910729 -63613849 - MER104 DNA Tc2 -5 175 9 2262 115 3 3 chr3 163910923 163911271 -63613307 + L1PB1 LINE L1 5800 6147 -4 550 192 42 17 chr3 163911404 163911524 -63613054 + MER96 DNA MER1_type? 53 175 0 968 276 110 24 chr3 163911587 163912043 -63612535 + LTR33 LTR ERVL 12 506 -15 279 325 41 8 chr3 163912638 163912761 -63611817 - MIR3 SINE MIR -15 193 67 22 0 0 0 chr3 163912773 163912795 -63611783 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 163912829 163912850 -63611728 + AT_rich Low_complexity Low_complexity 1 21 0 1108 204 61 27 chr3 163913086 163913480 -63611098 - L1MCa LINE L1 -3644 2571 2154 287 258 80 90 chr3 163913498 163913874 -63610704 - L1MCa LINE L1 -4312 2084 1713 * 2293 276 92 47 chr3 163913850 163914747 -63609831 - L1M4c LINE L1 -4415 2723 1868 1933 124 8 0 chr3 163914747 163915014 -63609564 - AluSx SINE Alu -4 308 40 2293 276 92 47 chr3 163915014 163916604 -63607974 - L1M4c LINE L1 -5270 1868 11 2746 190 82 41 chr3 163916705 163916947 -63607631 + Looper DNA T2_type 3 234 -1324 1602 120 73 0 chr3 163916947 163917180 -63607398 - AluSq SINE Alu -1 312 63 2746 190 82 41 chr3 163917180 163917275 -63607303 + Looper DNA T2_type 234 324 -1234 2311 119 0 0 chr3 163917275 163917587 -63606991 + AluSx SINE Alu 1 312 0 2746 190 82 41 chr3 163917587 163918150 -63606428 + Looper DNA T2_type 324 941 -617 192 350 0 0 chr3 163918370 163918430 -63606148 - MER5A DNA MER1_type -2 187 128 814 256 78 69 chr3 163918453 163918813 -63605765 - MLT1A2 LTR MaLR -11 363 1 338 191 22 56 chr3 163918813 163918902 -63605676 - MER5A DNA MER1_type -93 96 11 366 369 16 19 chr3 163921108 163921390 -63603188 - L1 LINE L1 -3085 3061 2786 425 333 81 59 chr3 163921408 163921913 -63602665 - HAL1 LINE L1 -879 1628 1113 276 213 0 0 chr3 163924167 163924228 -63600350 + (TG)n Simple_repeat Simple_repeat 2 62 0 250 217 67 0 chr3 163924370 163924430 -63600148 + L2 LINE L2 3208 3271 -1 264 264 0 33 chr3 163924545 163924636 -63599942 + (TATG)n Simple_repeat Simple_repeat 1 88 0 326 243 6 22 chr3 163924636 163924731 -63599847 + (TATATG)n Simple_repeat Simple_repeat 1 93 -85 13811 139 28 25 chr3 163924731 163927143 -63597435 + Tigger1 DNA MER2_type 1 2418 0 326 243 6 22 chr3 163927143 163927228 -63597350 + (TATATG)n Simple_repeat Simple_repeat 93 178 0 259 357 53 22 chr3 163927365 163927592 -63596986 - L2 LINE L2 -1575 1739 1506 560 203 68 31 chr3 163927677 163927840 -63596738 + MLT1A2 LTR MaLR 4 172 -218 335 216 0 10 chr3 163927872 163927974 -63596604 + GA-rich Low_complexity Low_complexity 1 101 0 760 228 11 5 chr3 163928014 163928198 -63596380 + MLT1A2 LTR MaLR 190 374 0 192 211 281 0 chr3 163928505 163928562 -63596016 - MIR SINE MIR -173 89 17 375 252 78 0 chr3 163928637 163928752 -63595826 + MIR SINE MIR 104 227 -35 734 284 54 38 chr3 163928871 163929241 -63595337 - L2 LINE L2 -1807 1507 1132 730 218 207 0 chr3 163929588 163929781 -63594797 - MIR SINE MIR -8 254 22 261 353 52 9 chr3 163930016 163930132 -63594446 - L2 LINE L2 -49 3223 3103 538 296 68 37 chr3 163930488 163930740 -63593838 + MIR SINE MIR 2 260 -2 320 298 73 8 chr3 163931037 163931161 -63593417 - MIR SINE MIR -12 250 119 5412 194 56 37 chr3 163931165 163934045 -63590533 + L1PA16 LINE L1 4143 6155 -11 1823 224 17 2 chr3 163934049 163934469 -63590109 + L1MC4 LINE L1 7238 7663 -379 330 339 50 0 chr3 163934514 163934635 -63589943 + L1MC4 LINE L1 7775 7901 -141 2171 61 0 40 chr3 163934654 163934932 -63589646 - AluY SINE Alu -15 296 30 333 78 0 0 chr3 163934932 163934983 -63589595 - AluY SINE Alu -226 82 32 473 108 0 0 chr3 163934983 163935048 -63589530 - AluS SINE Alu -248 65 1 586 272 133 22 chr3 163935140 163935386 -63589192 + MIR SINE MIR 12 262 0 207 0 0 0 chr3 163935647 163935670 -63588908 + (T)n Simple_repeat Simple_repeat 1 23 0 945 227 20 49 chr3 163937136 163937383 -63587195 - MIR SINE MIR -21 241 2 3257 169 81 23 chr3 163938263 163939089 -63585489 + L1MA6 LINE L1 4934 5844 -456 201 94 0 0 chr3 163939089 163939121 -63585457 + (CA)n Simple_repeat Simple_repeat 2 33 0 3257 169 81 23 chr3 163939121 163939379 -63585199 + L1MA6 LINE L1 5844 6086 -214 323 268 42 143 chr3 163939742 163940126 -63584452 + L2 LINE L2 2928 3272 0 261 57 0 0 chr3 163941353 163941388 -63583190 + (TG)n Simple_repeat Simple_repeat 1 35 0 279 309 29 29 chr3 163941451 163941590 -63582988 + MER5B DNA MER1_type 1 139 -39 744 293 20 20 chr3 163942045 163942291 -63582287 - MIR SINE MIR -1 261 16 605 135 18 0 chr3 163944761 163944872 -63579706 + (TCCA)n Simple_repeat Simple_repeat 2 114 0 239 230 11 0 chr3 163944924 163945011 -63579567 + (TCCA)n Simple_repeat Simple_repeat 4 91 0 1986 119 3 17 chr3 163945370 163945663 -63578915 + AluSx SINE Alu 1 289 -23 5293 150 16 4 chr3 163945811 163946849 -63577729 + L1PB3 LINE L1 5100 6154 0 946 276 40 45 chr3 163946834 163947382 -63577196 + L1MEc LINE L1 980 1526 -4870 * 2584 52 7 0 chr3 163947382 163947691 -63576887 + AluY SINE Alu 1 311 0 946 276 40 45 chr3 163947691 163947784 -63576794 + L1MEc LINE L1 1526 1618 -4778 21 0 0 0 chr3 163947851 163947872 -63576706 + AT_rich Low_complexity Low_complexity 1 21 0 2282 96 14 17 chr3 163947882 163948235 -63576343 - L1MA1 LINE L1 -6 6296 5945 434 146 78 10 chr3 163948361 163948464 -63576114 + L1MEc LINE L1 2745 2854 -3361 654 283 25 76 chr3 163948505 163948912 -63575666 + MLT1H LTR MaLR 1 386 -163 394 314 135 0 chr3 163949054 163949210 -63575368 + L2 LINE L2 2813 2989 -324 325 344 62 6 chr3 163949598 163949758 -63574820 + MIR SINE MIR 36 204 -58 310 247 115 82 chr3 163950152 163950334 -63574244 + L1MC5 LINE L1 7726 7913 -48 471 392 67 36 chr3 163950976 163951547 -63573031 + L2 LINE L2 2716 3313 0 899 255 69 4 chr3 163951559 163951790 -63572788 + MIR SINE MIR 9 254 -8 40 21 0 0 chr3 163952270 163952317 -63572261 + AT_rich Low_complexity Low_complexity 1 47 0 23 68 0 0 chr3 163953144 163953188 -63571390 + AT_rich Low_complexity Low_complexity 1 44 0 325 319 11 0 chr3 163953302 163953393 -63571185 - MIR SINE MIR -84 178 87 2289 129 16 19 chr3 163954430 163954795 -63569783 + THE1B LTR MaLR 1 364 0 2414 221 107 12 chr3 163955831 163956906 -63567672 - MER69B DNA AcHobo -3 1223 28 267 313 12 0 chr3 163957386 163957466 -63567112 + G-rich Low_complexity Low_complexity 6 86 0 738 264 95 16 chr3 163959630 163959872 -63564706 + MIR SINE MIR 2 262 0 1934 174 0 13 chr3 163960095 163960406 -63564172 - AluSx SINE Alu -5 307 1 258 288 0 45 chr3 163960460 163960571 -63564007 + A-rich Low_complexity Low_complexity 4 109 0 21 57 0 0 chr3 163961532 163961567 -63563011 + AT_rich Low_complexity Low_complexity 1 35 0 807 325 37 4 chr3 163961629 163961875 -63562703 + MIR SINE MIR 3 256 -6 226 307 129 106 chr3 163962220 163962653 -63561925 - L2 LINE L2 -339 2975 2533 418 260 189 12 chr3 163963556 163963729 -63560849 + MIR SINE MIR 12 207 -54 31878 62 3 2 chr3 163963740 163968029 -63556549 + L1P LINE L1 11 4302 -1844 1083 261 103 54 chr3 163968225 163968381 -63556197 + L2 LINE L2 2606 2753 -560 1753 101 4 0 chr3 163968381 163968619 -63555959 - AluY SINE Alu -15 296 58 1083 261 103 54 chr3 163968619 163969108 -63555470 + L2 LINE L2 2753 3277 -36 2214 115 0 0 chr3 163969534 163969820 -63554758 - AluSc SINE Alu -23 286 1 274 184 237 0 chr3 163970877 163970953 -63553625 + MIR SINE MIR 59 152 -110 32 43 0 0 chr3 163972028 163972074 -63552504 + AT_rich Low_complexity Low_complexity 1 46 0 273 264 47 28 chr3 163973430 163973536 -63551042 + L2 LINE L2 3141 3248 -24 * 2045 284 89 9 chr3 163973535 163974298 -63550280 + L2 LINE L2 1243 2066 -1248 537 276 16 27 chr3 163974471 163974656 -63549922 - MLT1I LTR MaLR -117 292 110 813 180 102 0 chr3 163977149 163977355 -63547223 + L1MA6 LINE L1 6074 6300 0 235 226 81 16 chr3 163977729 163977791 -63546787 - L2 LINE L2 -67 3205 3140 413 317 90 0 chr3 163978047 163978192 -63546386 - MIR3 SINE MIR -23 185 28 233 272 33 11 chr3 163978936 163979028 -63545550 + MLT1L LTR MaLR 197 290 -325 226 279 51 13 chr3 163979263 163979342 -63545236 + L2 LINE L2 2770 2851 -463 240 35 0 0 chr3 163979740 163979769 -63544809 + (TG)n Simple_repeat Simple_repeat 1 29 0 377 263 44 26 chr3 163980747 163980861 -63543717 + L2 LINE L2 3195 3310 -3 569 231 59 11 chr3 163981448 163981634 -63542944 + L1ME LINE L1 5528 5722 -399 24 32 0 0 chr3 163981674 163981705 -63542873 + AT_rich Low_complexity Low_complexity 1 31 0 382 86 70 39 chr3 163981705 163981833 -63542745 + (TATAA)n Simple_repeat Simple_repeat 5 136 0 49 0 0 0 chr3 163981833 163981882 -63542696 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr3 163981998 163982019 -63542559 + AT_rich Low_complexity Low_complexity 1 21 0 196 118 73 0 chr3 163982019 163982087 -63542491 + (TATAA)n Simple_repeat Simple_repeat 4 76 0 303 194 20 39 chr3 163982087 163982202 -63542376 - L1MC4 LINE L1 -1339 6983 1995 343 93 105 0 chr3 163982204 163982366 -63542212 + (TA)n Simple_repeat Simple_repeat 2 180 0 28 29 0 0 chr3 163982399 163982434 -63542144 + AT_rich Low_complexity Low_complexity 1 35 0 328 310 55 0 chr3 163982547 163982692 -63541886 + L1ME4a LINE L1 5966 6118 -3 748 224 122 118 chr3 163984164 163984810 -63539768 + L1MC4 LINE L1 7178 7826 -216 243 105 0 0 chr3 163984820 163984858 -63539720 + L1MC4 LINE L1 7789 7826 -216 256 136 0 0 chr3 163984862 163984906 -63539672 + L1MC4 LINE L1 7783 7826 -216 338 207 24 79 chr3 163984910 163985074 -63539504 + L1MC4 LINE L1 7746 7900 -142 21 0 0 0 chr3 163985097 163985118 -63539460 + AT_rich Low_complexity Low_complexity 1 21 0 339 143 32 0 chr3 163985218 163985281 -63539297 + MER116 DNA Mariner 1 65 -15 324 320 36 78 chr3 163985281 163985590 -63538988 + L1 LINE L1 3452 3747 -2399 300 257 0 59 chr3 163985778 163985879 -63538699 - MIR SINE MIR -33 229 135 528 152 8 48 chr3 163985887 163985915 -63538663 - L1ME LINE L1 -520 6040 6012 1150 163 71 113 chr3 163985915 163986296 -63538282 + MLT1A1 LTR MaLR 1 365 0 528 152 8 48 chr3 163986296 163986392 -63538186 - L1ME LINE L1 -548 6012 5921 667 231 41 0 chr3 163986462 163986657 -63537921 - L1ME LINE L1 -1014 5526 5324 1703 230 95 4 chr3 163986657 163987130 -63537448 - MLT1E2 LTR MaLR 0 626 111 278 167 0 115 chr3 163987173 163987251 -63537327 - MLT1E2 LTR MaLR -585 69 1 7795 238 62 20 chr3 163987251 163988670 -63535908 - L1ME LINE L1 -1212 5328 3970 2357 111 0 0 chr3 163988670 163988976 -63535602 - AluSg SINE Alu -4 306 1 7795 238 62 20 chr3 163988976 163989162 -63535416 - L1ME LINE L1 -2570 3970 3793 1637 163 19 7 chr3 163989162 163989432 -63535146 - AluJo SINE Alu -39 273 1 7795 238 62 20 chr3 163989432 163991060 -63533518 - L1ME LINE L1 -2747 3793 1961 470 254 71 30 chr3 163991066 163991472 -63533106 - L1ME LINE L1 -5084 1446 1017 246 278 9 19 chr3 163991516 163991624 -63532954 - L1ME LINE L1 -5514 1029 923 336 388 28 47 chr3 163992172 163992494 -63532084 - L1ME LINE L1 -6210 330 15 24 32 0 0 chr3 163993486 163993517 -63531061 + AT_rich Low_complexity Low_complexity 1 31 0 577 315 80 5 chr3 163993595 163993808 -63530770 - MIR SINE MIR -9 253 25 1729 168 7 20 chr3 163994204 163994496 -63530082 + AluJo SINE Alu 6 293 -19 380 232 12 0 chr3 163995067 163995149 -63529429 - MIR SINE MIR -85 177 95 242 171 0 0 chr3 163995166 163995207 -63529371 + MIR SINE MIR 222 262 0 895 227 22 0 chr3 163996762 163996947 -63527631 + MER5A DNA MER1_type 1 189 0 289 164 15 60 chr3 163998158 163998225 -63526353 - L2 LINE L2 0 3313 3250 3725 173 19 24 chr3 163999396 163999577 -63525001 - L1MD1 LINE L1 0 6242 6062 1301 190 107 34 chr3 163999577 163999840 -63524738 + AluJo SINE Alu 1 282 -30 282 29 0 0 chr3 163999843 163999878 -63524700 + (GA)n Simple_repeat Simple_repeat 2 36 0 3725 173 19 24 chr3 163999878 164000449 -63524129 - L1MD1 LINE L1 -182 6060 5490 1128 233 3 3 chr3 164000456 164000744 -63523834 - L1MD1 LINE L1 -1255 4891 4604 2152 122 0 0 chr3 164000995 164001305 -63523273 + AluSg SINE Alu 1 310 0 2292 106 0 13 chr3 164002313 164002625 -63521953 + AluSq SINE Alu 5 312 -1 194 287 170 43 chr3 164004238 164004332 -63520246 - L2 LINE L2 -15 3257 3152 267 306 94 0 chr3 164004759 164004844 -63519734 + L2 LINE L2 3221 3313 0 336 294 67 8 chr3 164004997 164005116 -63519462 + MIR3 SINE MIR 34 159 -49 197 189 54 108 chr3 164005144 164005218 -63519360 - MER5B DNA MER1_type -20 158 89 1205 263 136 38 chr3 164006064 164006846 -63517732 - L2 LINE L2 -170 3143 2253 372 281 194 35 chr3 164006925 164007075 -63517503 + L2 LINE L2 2911 3036 -277 2124 104 3 39 chr3 164007075 164007382 -63517196 - AluSc SINE Alu -13 296 1 372 281 194 35 chr3 164007382 164007572 -63517006 + L2 LINE L2 3036 3305 -8 2460 71 0 0 chr3 164007626 164007922 -63516656 + AluY SINE Alu 1 296 -15 930 179 13 85 chr3 164008835 164009070 -63515508 + MER20 DNA MER1_type 1 218 -1 470 282 9 56 chr3 164009158 164009381 -63515197 + MLT1J2 LTR MaLR 3 212 -197 281 176 20 0 chr3 164009395 164009446 -63515132 - MER5A DNA MER1_type -1 188 137 600 252 7 0 chr3 164009491 164009626 -63514952 - MER5A DNA MER1_type -53 136 1 417 261 0 101 chr3 164009640 164009828 -63514750 + MLT1J2 LTR MaLR 272 440 -10 1663 154 22 32 chr3 164011356 164011668 -63512910 - AluJo SINE Alu -3 309 1 362 281 118 28 chr3 164012068 164012246 -63512332 - MIR SINE MIR -19 243 50 310 333 73 87 chr3 164013191 164013630 -63510948 - L2 LINE L2 -4 3268 2836 206 298 85 57 chr3 164013668 164013740 -63510838 - L2 LINE L2 -906 2408 2333 281 244 423 0 chr3 164013740 164013863 -63510715 - MER5A DNA MER1_type -3 186 12 21 36 0 0 chr3 164014808 164014836 -63509742 + AT_rich Low_complexity Low_complexity 1 28 0 411 114 25 63 chr3 164015616 164015695 -63508883 - MER69 DNA AcHobo -2 2524 2449 * 639 185 96 7 chr3 164015690 164015825 -63508753 - MER69 DNA AcHobo -1079 147 1 194 189 38 38 chr3 164016043 164016096 -63508482 + L2 LINE L2 3218 3270 -2 5408 139 26 59 chr3 164016982 164018037 -63506541 + L1MB3 LINE L1 3 1023 -5361 * 9058 189 32 11 chr3 164018031 164022812 -63501766 + L1MB3 LINE L1 1348 6418 -1 642 286 36 5 chr3 164023450 164023642 -63500936 - MER58A DNA MER1_type -26 198 1 2589 53 0 0 chr3 164024126 164024428 -63500150 + AluY SINE Alu 1 302 -9 302 210 297 58 chr3 164024732 164024870 -63499708 + MIR SINE MIR 86 256 -6 280 314 108 10 chr3 164025166 164025268 -63499310 + L2 LINE L2 3190 3301 -12 1597 220 16 14 chr3 164028901 164029265 -63495313 - MLT1A1 LTR MaLR 0 365 1 407 355 60 46 chr3 164029369 164029738 -63494840 + MLT1K LTR MaLR 17 390 -198 1549 131 0 0 chr3 164030473 164030733 -63493845 + AluSg/x SINE Alu 84 343 0 819 259 134 10 chr3 164030796 164031109 -63493469 - L1ME3A LINE L1 -117 6053 5702 346 214 135 6 chr3 164031146 164031248 -63493330 - L1ME3A LINE L1 -579 5585 5483 1746 275 112 11 chr3 164031265 164032126 -63492452 - L1ME3A LINE L1 -1480 4666 3719 706 268 133 15 chr3 164032181 164032640 -63491938 - L1ME3A LINE L1 -2563 3583 3071 305 230 130 25 chr3 164033244 164033405 -63491173 + L1MC4a LINE L1 5704 5881 -1927 336 276 16 39 chr3 164033628 164033755 -63490823 - L1ME LINE L1 -543 5578 5455 21 0 0 0 chr3 164035168 164035189 -63489389 + AT_rich Low_complexity Low_complexity 1 21 0 200 176 39 0 chr3 164037489 164037540 -63487038 + (TA)n Simple_repeat Simple_repeat 2 54 0 611 345 41 0 chr3 164038317 164038563 -63486015 - L3 LINE CR1 -5 1572 1317 1249 162 0 55 chr3 164039199 164039302 -63485276 - L1MC1 LINE L1 -9 6324 6217 2354 70 0 0 chr3 164039302 164039623 -63484955 - AluY SINE Alu 0 321 1 1249 162 0 55 chr3 164039623 164039753 -63484825 - L1MC1 LINE L1 -116 6217 6103 1568 169 68 37 chr3 164039821 164040175 -63484403 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr3 164042491 164042513 -63482065 + AT_rich Low_complexity Low_complexity 1 22 0 21 71 0 0 chr3 164042655 164042697 -63481881 + AT_rich Low_complexity Low_complexity 1 42 0 408 339 16 0 chr3 164044157 164044278 -63480300 + L2 LINE L2 3149 3271 -1 331 312 57 8 chr3 164044284 164044531 -63480047 + L1ME3A LINE L1 5513 5771 -350 14741 119 31 30 chr3 164044534 164044712 -63479866 - Tigger1 DNA MER2_type 0 2418 2242 2264 109 0 0 chr3 164044712 164045014 -63479564 + AluSg1 SINE Alu 1 302 -7 14741 119 31 30 chr3 164045014 164045954 -63478624 - Tigger1 DNA MER2_type -176 2242 1305 2674 43 0 32 chr3 164045954 164046299 -63478279 - L1PA5 LINE L1 -3 6151 5818 14741 119 31 30 chr3 164046299 164047593 -63476985 - Tigger1 DNA MER2_type -1113 1305 1 1123 299 77 34 chr3 164047622 164048698 -63475880 - L1M4 LINE L1 -2100 4046 2924 265 347 76 18 chr3 164048905 164049130 -63475448 - L1MC/D LINE L1 -2182 5626 5389 560 257 108 51 chr3 164050728 164051043 -63473535 - L1ME3A LINE L1 -219 6187 5855 247 247 0 62 chr3 164051048 164051129 -63473449 - L1ME3A LINE L1 -619 5783 5708 2069 291 90 27 chr3 164051129 164052256 -63472322 - L2 LINE L2 -5 3308 2139 1413 213 55 19 chr3 164052283 164052644 -63471934 + MLT1A2 LTR MaLR 1 374 0 933 238 30 22 chr3 164052658 164052889 -63471689 - MIR SINE MIR -25 237 5 418 258 106 70 chr3 164052914 164053338 -63471240 - L1ME3A LINE L1 -725 5673 5235 673 241 64 41 chr3 164053360 164053580 -63470998 + L1ME3A LINE L1 5946 6170 0 394 236 130 83 chr3 164053587 164053863 -63470715 - L1ME3A LINE L1 -3953 2431 2143 719 298 80 21 chr3 164053893 164054319 -63470259 - L1ME3A LINE L1 -5236 1136 686 21 0 0 0 chr3 164055972 164055993 -63468585 + AT_rich Low_complexity Low_complexity 1 21 0 241 293 69 46 chr3 164056158 164056332 -63468246 - L2 LINE L2 -1232 2082 1905 1192 181 220 41 chr3 164056795 164057182 -63467396 + MSTB2 LTR MaLR 2 457 0 24 32 0 0 chr3 164057341 164057372 -63467206 + AT_rich Low_complexity Low_complexity 1 31 0 398 279 52 4 chr3 164057456 164057604 -63466974 - MIR SINE MIR -65 143 19 246 226 172 65 chr3 164057965 164058151 -63466427 + L1ME4a LINE L1 5847 6052 -69 230 184 20 0 chr3 164058677 164058726 -63465852 + L1M2a LINE L1 654 703 -6465 445 349 22 17 chr3 164060273 164060505 -63464073 + MIR SINE MIR 30 262 0 265 279 0 0 chr3 164060589 164060657 -63463921 - MER81 DNA DNA -2 112 45 238 224 15 15 chr3 164060751 164060818 -63463760 - MER116 DNA Mariner -4 76 10 214 194 0 0 chr3 164060934 164060970 -63463608 - L2 LINE L2 -13 3300 3265 2011 119 31 39 chr3 164062323 164062683 -63461895 + THE1B LTR MaLR 8 364 0 207 0 0 0 chr3 164062753 164062776 -63461802 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 193 200 100 20 chr3 164063266 164063316 -63461262 - MIR SINE MIR -93 169 116 1183 193 140 21 chr3 164064161 164064533 -63460045 + Charlie1b DNA MER1_type 4 443 -2318 726 170 228 0 chr3 164064533 164064704 -63459874 + MER63A DNA MER1_type 1 210 0 1183 193 140 21 chr3 164064704 164064794 -63459784 + Charlie1b DNA MER1_type 443 521 -2 257 278 10 31 chr3 164065013 164065110 -63459468 + MIR3 SINE MIR 112 206 -2 236 350 110 0 chr3 164065150 164065313 -63459265 + L2 LINE L2 2871 3051 -221 481 219 17 25 chr3 164065464 164065583 -63458995 - L2 LINE L2 0 3313 3196 21 0 0 0 chr3 164068078 164068099 -63456479 + AT_rich Low_complexity Low_complexity 1 21 0 358 273 133 30 chr3 164068601 164068766 -63455812 + MIR SINE MIR 16 197 -65 552 250 14 0 chr3 164069237 164069377 -63455201 + MER5B DNA MER1_type 1 142 -36 539 313 68 0 chr3 164069519 164069682 -63454896 + MER5B DNA MER1_type 5 178 0 224 317 50 30 chr3 164071983 164072084 -63452494 + L3b LINE CR1 1397 1499 -84 198 0 0 0 chr3 164072237 164072259 -63452319 + (GA)n Simple_repeat Simple_repeat 2 23 0 21 36 0 0 chr3 164072336 164072364 -63452214 + AT_rich Low_complexity Low_complexity 1 28 0 316 289 25 50 chr3 164073079 164073238 -63451340 + MIR SINE MIR 101 255 -7 1720 219 84 41 chr3 164073399 164073934 -63450644 + MLT1F1 LTR MaLR 10 567 0 259 238 199 19 chr3 164073990 164074146 -63450432 + MIR3 SINE MIR 22 207 -1 5235 114 20 38 chr3 164075280 164076113 -63448465 - L1PA16 LINE L1 0 6166 5333 2270 58 0 4 chr3 164076113 164076390 -63448188 - AluY SINE Alu -2 309 34 5235 114 20 38 chr3 164076390 164077061 -63447517 - L1PA16 LINE L1 -833 5333 4651 234 390 50 0 chr3 164077302 164077402 -63447176 + L2 LINE L2 3123 3227 -45 401 354 22 39 chr3 164077852 164078033 -63446545 - MIR3 SINE MIR -15 193 16 2075 245 112 41 chr3 164078628 164079390 -63445188 + L2 LINE L2 1617 2432 -882 907 259 186 30 chr3 164079449 164079890 -63444688 + L2 LINE L2 2804 3313 0 189 206 0 0 chr3 164081371 164081405 -63443173 - L2 LINE L2 -16 3256 3223 229 309 40 32 chr3 164082256 164082382 -63442196 + MLT1H LTR MaLR 29 155 -394 349 282 39 19 chr3 164082536 164082692 -63441886 + MLT1H LTR MaLR 391 549 0 2254 182 9 7 chr3 164082796 164083219 -63441359 + MLT1C LTR MaLR 1 424 -43 369 287 50 155 chr3 164083285 164083763 -63440815 + L2 LINE L2 2841 3268 -4 890 264 177 32 chr3 164086225 164086916 -63437662 + L2 LINE L2 2382 3221 -92 2183 122 42 33 chr3 164086916 164087277 -63437301 + THE1B LTR MaLR 1 364 0 890 264 177 32 chr3 164087277 164087386 -63437192 + L2 LINE L2 3221 3313 0 238 209 257 38 chr3 164087390 164087495 -63437083 - MIR SINE MIR -115 147 20 182 330 80 23 chr3 164088065 164088153 -63436425 + MIR SINE MIR 58 150 -58 556 237 111 5 chr3 164088187 164088394 -63436184 + LTR50 LTR ERVL 1 229 -566 305 278 152 0 chr3 164088423 164088621 -63435957 + LTR50 LTR ERVL 488 715 -80 2035 128 56 19 chr3 164088898 164089258 -63435320 + THE1C LTR MaLR 3 375 0 9173 110 85 40 chr3 164089258 164090770 -63433808 + THE1C-int LTR MaLR 1 1580 0 2151 111 64 19 chr3 164090770 164091129 -63433449 + THE1C LTR MaLR 1 375 0 180 293 0 0 chr3 164091315 164091356 -63433222 + L3 LINE CR1 1464 1504 -73 199 108 162 0 chr3 164092031 164092068 -63432510 + MER5A DNA MER1_type 34 76 -113 * 397 231 58 10 chr3 164092059 164092163 -63432415 - MER5A DNA MER1_type -77 112 4 21 57 0 0 chr3 164092493 164092528 -63432050 + AT_rich Low_complexity Low_complexity 1 35 0 2311 100 0 0 chr3 164092795 164093086 -63431492 + AluSq SINE Alu 1 291 -22 504 299 48 38 chr3 164093090 164093381 -63431197 + L1ME4a LINE L1 2879 3172 -2974 192 280 20 0 chr3 164093513 164093563 -63431015 + MIR SINE MIR 86 136 -72 249 366 76 74 chr3 164093958 164094338 -63430240 - L2 LINE L2 0 3272 2892 227 279 47 78 chr3 164095337 164095466 -63429112 + MIR3 SINE MIR 32 156 -52 224 254 139 49 chr3 164095829 164095951 -63428627 + L2 LINE L2 3139 3271 -1 188 359 107 34 chr3 164096946 164097208 -63427370 + L2 LINE L2 2214 2494 -820 305 240 10 20 chr3 164099912 164100012 -63424566 - LTR67 LTR ERVL 0 557 459 350 238 24 12 chr3 164100245 164100329 -63424249 - MLT1K LTR MaLR -502 86 2 193 160 0 227 chr3 164100678 164100753 -63423825 - L3 LINE CR1 -234 1343 1286 457 310 71 29 chr3 164100776 164101267 -63423311 + L1ME4a LINE L1 4335 4846 -1300 23 33 0 0 chr3 164101472 164101502 -63423076 + AT_rich Low_complexity Low_complexity 1 30 0 1697 155 29 0 chr3 164101704 164101981 -63422597 - AluJo SINE Alu -5 307 23 436 292 101 52 chr3 164102080 164102836 -63421742 + L1ME4a LINE L1 5312 6104 -17 24 0 0 0 chr3 164102845 164102869 -63421709 + AT_rich Low_complexity Low_complexity 1 24 0 181 279 73 15 chr3 164103092 164103160 -63421418 - L3 LINE CR1 -1229 348 277 282 56 0 0 chr3 164104194 164104230 -63420348 + (TG)n Simple_repeat Simple_repeat 2 37 0 301 255 9 104 chr3 164104891 164104997 -63419581 + MIR SINE MIR 21 116 -146 22 0 0 0 chr3 164105070 164105092 -63419486 + AT_rich Low_complexity Low_complexity 1 22 0 354 357 14 7 chr3 164106949 164107089 -63417489 + MIR SINE MIR 20 160 -102 642 284 137 9 chr3 164107160 164107371 -63417207 + MIR SINE MIR 2 239 -23 969 265 13 4 chr3 164108026 164108256 -63416322 + MIR SINE MIR 23 254 -8 448 273 76 18 chr3 164108274 164108440 -63416138 + MIR SINE MIR 69 252 -10 353 304 146 0 chr3 164108561 164108719 -63415859 + MIR SINE MIR 61 241 -21 237 306 135 77 chr3 164108756 164109305 -63415273 + L2 LINE L2 2383 2963 -351 430 151 11 11 chr3 164113370 164113463 -63411115 + CT-rich Low_complexity Low_complexity 3 95 0 214 244 0 0 chr3 164113917 164113962 -63410616 + GA-rich Low_complexity Low_complexity 1 45 0 665 239 57 0 chr3 164114094 164114253 -63410325 + MIR SINE MIR 48 215 -47 1800 170 0 20 chr3 164114762 164115068 -63409510 + AluJb SINE Alu 1 300 -12 34 0 0 0 chr3 164115068 164115102 -63409476 + AT_rich Low_complexity Low_complexity 1 34 0 848 266 39 26 chr3 164115404 164115637 -63408941 + MIR SINE MIR 17 252 -10 245 170 0 21 chr3 164115828 164115875 -63408703 + MIR SINE MIR 213 258 -4 242 157 0 20 chr3 164115875 164115926 -63408652 + GA-rich Low_complexity Low_complexity 1 50 0 2580 108 22 12 chr3 164117152 164117561 -63407017 + MER4A LTR ERV1 252 664 0 1046 261 185 20 chr3 164119070 164119577 -63405001 - L2 LINE L2 0 3313 2726 713 340 54 31 chr3 164119768 164120159 -63404419 + L3 LINE CR1 1178 1577 0 579 260 27 13 chr3 164121056 164121206 -63403372 - MIR SINE MIR -14 248 97 1112 171 51 9 chr3 164121255 164121471 -63403107 + MER7A DNA MER2_type 1 223 -123 453 232 11 0 chr3 164121607 164121702 -63402876 + MER7A DNA MER2_type 251 346 0 260 269 102 0 chr3 164121702 164121799 -63402779 - MIR SINE MIR -63 145 44 577 251 94 0 chr3 164122174 164122345 -63402233 + MIR SINE MIR 76 262 0 887 177 12 6 chr3 164124248 164124412 -63400166 + FRAM SINE Alu 1 165 -1 487 321 80 9 chr3 164126345 164126557 -63398021 - MIR SINE MIR -2 260 34 216 171 0 0 chr3 164128314 164128355 -63396223 + (CA)n Simple_repeat Simple_repeat 1 41 0 1839 176 7 3 chr3 164128663 164128959 -63395619 - AluJo SINE Alu -9 303 7 3554 110 48 38 chr3 164129086 164129694 -63394884 + LTR18B LTR ERVL 1 614 0 2341 65 0 0 chr3 164132035 164132329 -63392249 - L1PA7 LINE L1 -2 6152 5859 549 67 0 0 chr3 164132329 164132404 -63392174 + L1P3 LINE L1 5750 5824 -330 352 291 0 0 chr3 164133157 164133243 -63391335 - L2 LINE L2 -1 3312 3227 29 60 0 0 chr3 164134561 164134611 -63389967 + AT_rich Low_complexity Low_complexity 1 50 0 181 274 263 11 chr3 164134679 164134774 -63389804 + MIR SINE MIR 47 165 -97 1537 207 131 35 chr3 164135293 164135781 -63388797 + MLT1F LTR MaLR 1 535 -7 318 325 18 26 chr3 164136285 164136399 -63388179 - L2 LINE L2 -19 3294 3182 467 316 19 0 chr3 164137500 164137655 -63386923 - Charlie8 DNA MER1_type -2256 161 4 227 236 214 0 chr3 164137890 164137979 -63386599 + L1MEd LINE L1 78 185 -5934 1813 117 3 39 chr3 164138122 164138405 -63386173 + AluSq SINE Alu 1 273 -40 333 0 0 0 chr3 164138405 164138442 -63386136 + (TC)n Simple_repeat Simple_repeat 2 38 0 267 31 0 0 chr3 164138441 164138473 -63386105 + (TA)n Simple_repeat Simple_repeat 1 32 0 * 453 293 169 45 chr3 164138568 164139065 -63385513 + L1MEd LINE L1 817 1421 -4889 344 280 38 8 chr3 164139354 164139608 -63384970 - L1MC4a LINE L1 -345 5776 5673 1905 167 7 0 chr3 164139813 164140119 -63384459 - AluJb SINE Alu -4 308 1 1290 259 112 62 chr3 164140234 164141291 -63383287 + HAL1 LINE L1 443 1551 -956 1403 178 64 43 chr3 164141419 164141700 -63382878 - AluJb SINE Alu -25 287 1 285 258 44 48 chr3 164143487 164143716 -63380862 - L1MC4a LINE L1 -1443 4703 4476 1664 190 30 19 chr3 164144939 164145308 -63379270 + LTR69 LTR ERVL 216 588 0 423 310 30 30 chr3 164145321 164145518 -63379060 - MIR SINE MIR 0 262 66 2296 89 0 10 chr3 164145558 164145860 -63378718 - AluY SINE Alu -12 299 1 10172 33 0 0 chr3 164146351 164148346 -63376232 + L1PA4 LINE L1 4156 6153 -2 2179 122 3 0 chr3 164149669 164149963 -63374615 - AluSg SINE Alu -15 295 1 185 302 0 23 chr3 164150730 164150773 -63373805 + L2 LINE L2 3134 3175 -97 1827 156 13 62 chr3 164151006 164151391 -63373187 - MER47A DNA MER2_type 0 366 1 187 293 17 0 chr3 164151563 164151621 -63372957 - MIR3 SINE MIR -39 169 111 491 283 45 17 chr3 164152047 164152224 -63372354 - L2 LINE L2 -8 3305 3124 494 145 0 0 chr3 164152257 164152340 -63372238 - MER53 DNA DNA -106 83 1 345 100 0 0 chr3 164152345 164152395 -63372183 + (TG)n Simple_repeat Simple_repeat 2 51 0 284 211 0 0 chr3 164152542 164152594 -63371984 - L2 LINE L2 -335 2978 2927 514 223 32 70 chr3 164152597 164152754 -63371824 - L2 LINE L2 -1 3312 3162 1900 199 41 29 chr3 164153127 164153772 -63370806 + L1PBb LINE L1 792 1535 -4668 251 349 42 15 chr3 164154002 164154137 -63370441 - MIR SINE MIR -73 135 20 2479 90 0 0 chr3 164156304 164156615 -63367963 - AluY SINE Alu 0 311 1 31742 54 2 0 chr3 164157003 164160900 -63363678 + L1P LINE L1 114 4017 -2129 237 270 81 47 chr3 164161055 164161203 -63363375 - L1 LINE L1 -1104 5042 4890 * 850 270 85 32 chr3 164161192 164161570 -63363008 - HAL1b LINE L1 -803 545 148 24 0 0 0 chr3 164162122 164162146 -63362432 + AT_rich Low_complexity Low_complexity 1 24 0 914 237 148 11 chr3 164162211 164162667 -63361911 - MLT1G1 LTR MaLR 0 595 2 422 284 99 43 chr3 164163284 164163657 -63360921 - L1 LINE L1 -1537 4609 4216 1548 146 8 12 chr3 164163701 164163947 -63360631 - L1PB4 LINE L1 0 6156 5912 298 289 25 50 chr3 164164757 164164916 -63359662 + MIR SINE MIR 101 255 -7 1925 216 83 44 chr3 164165071 164165612 -63358966 + MLT1F1 LTR MaLR 6 567 0 248 237 208 14 chr3 164165684 164165824 -63358754 + MIR3 SINE MIR 39 207 -1 196 304 40 99 chr3 164166743 164166996 -63357582 - L2 LINE L2 -86 3186 2949 1030 207 61 9 chr3 164167055 164167268 -63357310 + MER58A DNA MER1_type 1 224 0 958 252 53 62 chr3 164167294 164167635 -63356943 + MER102b DNA MER1_type 4 341 0 193 283 94 51 chr3 164167786 164167924 -63356654 - L2 LINE L2 -640 2674 2531 213 214 26 43 chr3 164169887 164170004 -63354574 + (CGCGG)n Simple_repeat Simple_repeat 1 115 0 28 0 0 0 chr3 164170012 164170040 -63354538 + GC_rich Low_complexity Low_complexity 1 28 0 222 279 47 78 chr3 164171534 164171663 -63352915 + MIR3 SINE MIR 32 156 -52 396 240 16 47 chr3 164172274 164172403 -63352175 - Charlie8 DNA MER1_type -2236 181 57 200 322 67 22 chr3 164172426 164172516 -63352062 + L3 LINE CR1 1288 1381 -196 24 32 0 0 chr3 164173643 164173674 -63350904 + AT_rich Low_complexity Low_complexity 1 31 0 395 275 53 6 chr3 164173758 164173906 -63350672 - MIR SINE MIR -65 143 19 233 197 15 45 chr3 164174267 164174333 -63350245 + L1ME LINE L1 5847 5910 -211 307 335 84 30 chr3 164174999 164175166 -63349412 - L3 LINE CR1 -279 1298 1123 561 306 11 11 chr3 164175367 164175550 -63349028 + L3 LINE CR1 594 776 -801 21 0 0 0 chr3 164175597 164175618 -63348960 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 164175735 164175756 -63348822 + AT_rich Low_complexity Low_complexity 1 21 0 180 254 111 0 chr3 164176274 164176337 -63348241 - MIR SINE MIR -152 110 41 596 253 56 6 chr3 164176571 164176749 -63347829 + MIR SINE MIR 58 244 -18 1301 239 28 21 chr3 164176985 164177457 -63347121 + L1P LINE L1 1 475 -5671 455 285 32 6 chr3 164178567 164178725 -63345853 + CT-rich Low_complexity Low_complexity 5 166 0 21 0 0 0 chr3 164179467 164179488 -63345090 + AT_rich Low_complexity Low_complexity 1 21 0 260 326 23 45 chr3 164179830 164179962 -63344616 - L2 LINE L2 -217 3055 2927 21 0 0 0 chr3 164180852 164180873 -63343705 + AT_rich Low_complexity Low_complexity 1 21 0 610 288 70 98 chr3 164181464 164182137 -63342441 - L1MEd LINE L1 -5005 1114 461 21 82 0 0 chr3 164182676 164182725 -63341853 + AT_rich Low_complexity Low_complexity 1 49 0 637 288 50 65 chr3 164182932 164183017 -63341561 + L1MC/D LINE L1 5255 5340 -2468 2519 70 0 0 chr3 164183017 164183319 -63341259 + AluY SINE Alu 1 302 -9 637 288 50 65 chr3 164183319 164183698 -63340880 + L1MC/D LINE L1 5340 5712 -2096 2089 108 0 0 chr3 164184363 164184686 -63339892 - AluSc SINE Alu 0 323 1 203 0 0 36 chr3 164184724 164184752 -63339826 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2058 142 36 18 chr3 164184863 164185194 -63339384 + MER1B DNA MER1_type 1 337 0 301 273 41 111 chr3 164185865 164186037 -63338541 + MIR3 SINE MIR 32 191 -17 512 340 26 0 chr3 164186041 164186197 -63338381 - MER5A DNA MER1_type -4 185 26 21 0 0 0 chr3 164186363 164186384 -63338194 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr3 164187274 164187299 -63337279 + AT_rich Low_complexity Low_complexity 1 25 0 32 26 0 0 chr3 164187490 164187529 -63337049 + AT_rich Low_complexity Low_complexity 1 39 0 30 27 0 0 chr3 164188386 164188423 -63336155 + AT_rich Low_complexity Low_complexity 1 37 0 205 346 15 60 chr3 164189665 164189798 -63334780 - MIR SINE MIR -63 145 19 205 291 206 14 chr3 164189995 164190136 -63334442 - MIR SINE MIR -48 214 47 462 345 75 6 chr3 164190257 164190431 -63334147 - L2 LINE L2 -5 3267 3082 353 283 20 0 chr3 164190901 164191000 -63333578 - MIR3 SINE MIR -7 201 101 520 282 75 48 chr3 164191229 164191481 -63333097 - MIR SINE MIR -1 261 3 626 204 0 0 chr3 164191994 164192097 -63332481 + MER96 DNA MER1_type? 25 127 -48 40322 75 8 9 chr3 164192653 164198802 -63325776 - L1PA5 LINE L1 -3 6151 12 994 118 0 0 chr3 164199315 164199442 -63325136 + AluSq/x SINE Alu 1 127 -186 295 210 49 0 chr3 164199836 164199917 -63324661 - L1ME4a LINE L1 -2 6119 6035 2145 248 46 46 chr3 164200479 164200995 -63323583 - MLT1E2 LTR MaLR 0 626 108 2686 120 0 8 chr3 164200995 164201362 -63323216 - THE1B LTR MaLR 0 364 1 2145 248 46 46 chr3 164201362 164201434 -63323144 - MLT1E2 LTR MaLR -517 109 38 567 220 8 0 chr3 164202754 164202872 -63321706 - MER105 DNA DNA -42 162 44 * 2393 156 67 45 chr3 164202870 164202974 -63321604 - Charlie1b DNA MER1_type -2238 523 423 2202 107 3 16 chr3 164202974 164203282 -63321296 + AluSx SINE Alu 1 304 -8 2393 156 67 45 chr3 164203282 164203684 -63320894 - Charlie1b DNA MER1_type -2338 423 6 312 120 0 0 chr3 164205419 164205469 -63319109 + (TG)n Simple_repeat Simple_repeat 2 51 0 1066 140 56 9 chr3 164206867 164207081 -63317497 - L1MA8 LINE L1 -5 6286 6063 186 275 130 0 chr3 164207193 164207262 -63317316 - L2 LINE L2 -2 3311 3234 202 296 204 20 chr3 164207379 164207575 -63317003 + L2 LINE L2 2579 2810 -504 273 128 0 0 chr3 164208060 164208107 -63316471 + (TTCA)n Simple_repeat Simple_repeat 4 50 0 321 26 0 0 chr3 164208326 164208364 -63316214 + (TG)n Simple_repeat Simple_repeat 2 39 0 300 319 98 21 chr3 164208368 164208629 -63315949 - L2 LINE L2 -264 3008 2731 226 333 90 13 chr3 164211992 164212070 -63312508 + MIR3 SINE MIR 3 86 -122 240 233 283 22 chr3 164212083 164212263 -63312315 - MLT1K LTR MaLR -30 558 332 2068 121 40 3 chr3 164212569 164212892 -63311686 + MER1B DNA MER1_type 3 337 0 187 311 19 47 chr3 164212927 164213033 -63311545 + MIR SINE MIR 105 207 -55 22 0 0 0 chr3 164213058 164213080 -63311498 + AT_rich Low_complexity Low_complexity 1 22 0 350 314 29 49 chr3 164213406 164213610 -63310968 + HAL1 LINE L1 2238 2437 -70 519 275 111 37 chr3 164213882 164214071 -63310507 + MIR SINE MIR 57 259 -3 318 337 82 30 chr3 164214115 164214655 -63309923 + L1ME4a LINE L1 5313 5880 -241 41 48 0 0 chr3 164214659 164214721 -63309857 + AT_rich Low_complexity Low_complexity 1 62 0 318 174 83 0 chr3 164214778 164214910 -63309668 + (TA)n Simple_repeat Simple_repeat 1 143 0 260 349 53 15 chr3 164215604 164215736 -63308842 - L2 LINE L2 0 3272 3136 423 301 91 72 chr3 164216914 164217330 -63307248 - MLT1K LTR MaLR -24 564 141 330 290 104 33 chr3 164217423 164217606 -63306972 + L1MEd LINE L1 19 214 -5905 650 203 54 0 chr3 164217840 164217988 -63306590 - MER93b LTR ERV1 -28 345 190 264 300 23 89 chr3 164217988 164218245 -63306333 + HAL1 LINE L1 1404 1643 -864 2494 78 0 7 chr3 164218640 164218947 -63305631 + AluY SINE Alu 1 305 -6 242 200 0 18 chr3 164219931 164219986 -63304592 + MIR SINE MIR 208 261 -1 234 0 0 0 chr3 164220184 164220210 -63304368 + (TG)n Simple_repeat Simple_repeat 2 27 0 739 265 32 5 chr3 164220246 164220431 -63304147 + MIR SINE MIR 2 191 -71 305 293 92 71 chr3 164220504 164220971 -63303607 - L1ME4a LINE L1 -43 6078 5602 254 289 48 10 chr3 164220985 164221089 -63303489 - L1ME4a LINE L1 -572 5594 5487 232 288 34 0 chr3 164221132 164221191 -63303387 + MIR SINE MIR 82 142 -66 409 248 35 50 chr3 164221425 164221566 -63303012 + L2 LINE L2 3154 3292 -21 6593 52 47 0 chr3 164221570 164222706 -63301872 + L1PA7 LINE L1 4970 6146 -8 575 273 163 13 chr3 164223165 164223392 -63301186 + MIR SINE MIR 2 262 0 584 285 124 5 chr3 164223420 164223606 -63300972 - MIR SINE MIR -15 247 40 1435 125 27 5 chr3 164224960 164225184 -63299394 - MER30 DNA MER1_type -1 229 1 946 243 157 40 chr3 164225317 164225889 -63298689 - L1MC5 LINE L1 -54 7907 7269 1685 184 29 6 chr3 164225975 164226322 -63298256 - MER90 LTR ERV1 -10 604 250 923 188 0 75 chr3 164226422 164226635 -63297943 + AluJb SINE Alu 5 201 -111 400 265 184 0 chr3 164226635 164226771 -63297807 + MER5A DNA MER1_type 23 183 -6 1298 277 119 49 chr3 164226794 164228079 -63296499 - L1MC4 LINE L1 -733 7228 5761 1752 159 3 40 chr3 164228079 164228380 -63296198 + AluJb SINE Alu 1 290 -22 1298 277 119 49 chr3 164228380 164228777 -63295801 - L1MC4 LINE L1 -2200 5761 5393 36 23 0 0 chr3 164228818 164228861 -63295717 + AT_rich Low_complexity Low_complexity 1 43 0 774 186 0 0 chr3 164229538 164229662 -63294916 + FLAM_C SINE Alu 1 124 -9 449 254 0 7 chr3 164229674 164229816 -63294762 + GA-rich Low_complexity Low_complexity 2 142 0 180 298 21 0 chr3 164230037 164230084 -63294494 + MIR SINE MIR 60 107 -101 264 230 54 14 chr3 164230164 164230238 -63294340 + MIR3 SINE MIR 127 203 -5 356 259 74 101 chr3 164231349 164231685 -63292893 + L2 LINE L2 2987 3313 0 1223 168 44 32 chr3 164232515 164232831 -63291747 + MER33 DNA MER1_type 5 324 0 221 253 69 35 chr3 164233797 164233884 -63290694 + MIR SINE MIR 109 198 -64 308 271 122 45 chr3 164234177 164234645 -63289933 - L1MC5 LINE L1 -186 7775 7272 341 146 57 81 chr3 164234795 164234852 -63289726 - L1MC5 LINE L1 -261 7700 7643 2091 228 20 24 chr3 164234852 164235357 -63289221 + MLT1D LTR MaLR 3 505 0 341 146 57 81 chr3 164235357 164235422 -63289156 - L1MC5 LINE L1 -318 7643 7581 269 315 72 9 chr3 164235482 164235593 -63288985 - MIR3 SINE MIR -1 207 90 297 305 0 0 chr3 164236316 164236398 -63288180 + L2 LINE L2 3191 3272 0 559 359 59 7 chr3 164236772 164237062 -63287516 - LTR33 LTR ERVL -157 364 60 234 239 11 34 chr3 164237190 164237278 -63287300 + L1 LINE L1 4247 4332 -1814 227 299 23 0 chr3 164237646 164237733 -63286845 - HAL1 LINE L1 -854 1653 1565 414 317 49 49 chr3 164237737 164238024 -63286554 - L1MEd LINE L1 -4938 1181 895 709 215 55 25 chr3 164238258 164238458 -63286120 + MER20 DNA MER1_type 14 219 0 207 0 0 0 chr3 164238742 164238765 -63285813 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 248 240 51 0 chr3 164239195 164239287 -63285291 + L1 LINE L1 4737 4832 -1314 5365 134 9 18 chr3 164239478 164240430 -63284148 - HERVH LTR ERV1 -5978 1735 792 2343 86 3 3 chr3 164241107 164241398 -63283180 - AluSp SINE Alu -22 291 1 1896 138 3 10 chr3 164241589 164241879 -63282699 + AluSx SINE Alu 1 288 -24 677 221 132 59 chr3 164242478 164242750 -63281828 + L1ME3A LINE L1 4883 5134 -1036 2888 16 0 0 chr3 164242750 164243068 -63281510 + AluYb8 SINE Alu 1 318 0 677 221 132 59 chr3 164243068 164243738 -63280840 + L1ME3A LINE L1 5134 5882 -288 988 209 0 0 chr3 164243823 164243995 -63280583 + FRAM SINE Alu 1 165 -11 2238 105 0 7 chr3 164244290 164244613 -63279965 - AluSc SINE Alu 0 309 2 385 224 84 14 chr3 164245516 164245659 -63278919 - MER53 DNA DNA -36 153 1 1072 246 74 41 chr3 164247269 164247663 -63276915 - MLT1J2 LTR MaLR -16 434 28 350 288 76 33 chr3 164247688 164248050 -63276528 - L1MC4a LINE L1 -325 5796 5534 1734 172 0 49 chr3 164248308 164248634 -63275944 - AluSx SINE Alu -2 310 1 567 242 65 7 chr3 164248663 164248816 -63275762 - MIR SINE MIR -33 229 68 22 0 0 0 chr3 164249031 164249053 -63275525 + AT_rich Low_complexity Low_complexity 1 22 0 198 292 106 35 chr3 164249646 164249759 -63274819 + MIR SINE MIR 86 206 -56 790 180 7 0 chr3 164250326 164250465 -63274113 - MER3 DNA MER1_type -68 141 2 906 220 84 14 chr3 164251330 164251544 -63273034 - MIR SINE MIR -22 240 12 208 353 185 5 chr3 164252057 164252241 -63272337 + L2 LINE L2 2426 2642 -672 1476 117 0 0 chr3 164252428 164252625 -63271953 - AluSx SINE Alu -6 304 108 260 184 0 20 chr3 164252625 164252674 -63271904 - MIR SINE MIR -203 59 12 759 130 0 0 chr3 164252927 164253035 -63271543 - AluSx SINE Alu -204 108 1 221 331 33 16 chr3 164253049 164253170 -63271408 + L2 LINE L2 2921 3043 -270 1586 112 19 38 chr3 164253269 164253582 -63270996 - L1MA3 LINE L1 -103 6202 5896 25 0 0 0 chr3 164253586 164253611 -63270967 + AT_rich Low_complexity Low_complexity 1 25 0 201 305 58 137 chr3 164253694 164253986 -63270592 - L2 LINE L2 -36 3236 2968 3124 89 5 7 chr3 164254271 164254720 -63269858 - LTR7 LTR ERV1 -2 448 1 20977 88 5 5 chr3 164254720 164259464 -63265114 - HERVH LTR ERV1 0 7713 3032 225 163 0 0 chr3 164259910 164259959 -63264619 + (TTCA)n Simple_repeat Simple_repeat 1 49 0 22415 166 25 13 chr3 164260011 164265302 -63259276 + L1M1 LINE L1 12 5374 -2191 4227 108 38 64 chr3 164265302 164265476 -63259102 + L1MA3 LINE L1 5590 5767 -538 2035 133 3 0 chr3 164265476 164265761 -63258817 + AluSp SINE Alu 1 286 -27 423 0 0 0 chr3 164265761 164265808 -63258770 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 4227 108 38 64 chr3 164265808 164266367 -63258211 + L1MA3 LINE L1 5765 6305 0 1460 150 45 0 chr3 164267471 164267691 -63256887 - MER30 DNA MER1_type 0 230 1 288 0 0 0 chr3 164268135 164268167 -63256411 + (CA)n Simple_repeat Simple_repeat 2 33 0 789 176 42 6 chr3 164269944 164270109 -63254469 + MER5B DNA MER1_type 2 172 -6 444 211 11 0 chr3 164270167 164270257 -63254321 - MER5A DNA MER1_type -90 99 9 255 217 0 33 chr3 164270919 164270979 -63253599 + (CATATA)n Simple_repeat Simple_repeat 3 60 0 270 341 56 32 chr3 164271320 164271446 -63253132 - MIR3 SINE MIR -38 170 42 1411 147 39 82 chr3 164272185 164272491 -63252087 - AluJb SINE Alu -19 293 1 215 350 72 0 chr3 164273038 164273135 -63251443 - L2 LINE L2 -27 3286 3183 199 324 184 15 chr3 164273162 164273298 -63251280 - L2 LINE L2 -12 3260 3102 * 244 270 80 0 chr3 164273297 164273397 -63251181 + MIR SINE MIR 69 176 -86 494 315 169 22 chr3 164273976 164274389 -63250189 + L3 LINE CR1 989 1462 -115 390 295 131 11 chr3 164275229 164275412 -63249166 + L2 LINE L2 2583 2787 -527 1009 252 78 68 chr3 164275421 164275598 -63248980 + LTR33 LTR ERVL 21 195 -326 2391 115 48 25 chr3 164275598 164275954 -63248624 + THE1B LTR MaLR 1 364 0 1009 252 78 68 chr3 164275954 164276185 -63248393 + LTR33 LTR ERVL 195 433 -88 283 320 178 12 chr3 164276191 164276438 -63248140 + L2 LINE L2 3021 3308 -5 1906 163 3 0 chr3 164276853 164277141 -63247437 - AluJo SINE Alu -23 289 1 246 289 178 46 chr3 164277909 164278061 -63246517 - MER5A DNA MER1_type 0 189 18 574 251 41 100 chr3 164278187 164278478 -63246100 + MER102a DNA MER1_type 57 330 0 315 349 84 6 chr3 164279597 164279763 -63244815 + MIR SINE MIR 1 179 -83 270 236 83 28 chr3 164280361 164280433 -63244145 + L2 LINE L2 3169 3244 -28 22 0 0 0 chr3 164280880 164280902 -63243676 + AT_rich Low_complexity Low_complexity 1 22 0 182 208 19 0 chr3 164280967 164281020 -63243558 + (TA)n Simple_repeat Simple_repeat 2 55 0 1183 184 0 40 chr3 164281714 164281937 -63242641 + AluJb SINE Alu 21 234 -78 2603 46 0 0 chr3 164282959 164283263 -63241315 + AluY SINE Alu 1 304 -7 278 301 0 0 chr3 164284542 164284615 -63239963 + MER5A DNA MER1_type 9 81 -108 180 61 30 30 chr3 164284627 164284660 -63239918 - MER5A DNA MER1_type -114 75 43 2119 137 161 11 chr3 164284852 164285224 -63239354 + MSTA LTR MaLR 1 428 0 6576 21 0 0 chr3 164285961 164286667 -63237911 + L1PA3 LINE L1 5450 6155 0 1007 73 0 0 chr3 164286895 164287018 -63237560 + L1PA11 LINE L1 6052 6174 0 637 308 36 0 chr3 164287018 164287239 -63237339 + L1ME1 LINE L1 5933 6161 -5 196 240 0 60 chr3 164287900 164287950 -63236628 + L2 LINE L2 3261 3307 -6 203 269 19 0 chr3 164288640 164288692 -63235886 - L2 LINE L2 0 3313 3261 607 317 136 28 chr3 164288901 164289718 -63234860 - L2 LINE L2 -49 3223 2325 416 289 72 41 chr3 164289805 164289999 -63234579 + L2 LINE L2 2892 3091 -181 626 264 31 6 chr3 164290019 164290178 -63234400 + MIR SINE MIR 29 191 -71 410 308 75 8 chr3 164290238 164290371 -63234207 + L2 LINE L2 3126 3267 -5 200 395 26 18 chr3 164291428 164291542 -63233036 + L2 LINE L2 3158 3272 0 620 256 211 20 chr3 164291709 164292065 -63232513 - MLT1L LTR MaLR -171 444 21 1915 176 3 3 chr3 164294683 164294995 -63229583 + AluJo SINE Alu 1 312 0 2384 77 3 3 chr3 164295222 164295521 -63229057 + AluSc SINE Alu 1 299 -10 212 320 107 0 chr3 164295539 164295642 -63228936 - MIR3 SINE MIR -92 116 3 231 36 0 0 chr3 164296327 164296355 -63228223 + (TGAA)n Simple_repeat Simple_repeat 1 28 0 481 277 15 23 chr3 164296530 164296660 -63227918 + MIR SINE MIR 1 129 -133 226 302 54 39 chr3 164296985 164297114 -63227464 + L2 LINE L2 3103 3233 -80 396 285 51 15 chr3 164297147 164297284 -63227294 - L2 LINE L2 -2 3311 3170 186 43 0 0 chr3 164298618 164298641 -63225937 + (CAG)n Simple_repeat Simple_repeat 1 23 0 249 217 50 0 chr3 164298679 164298739 -63225839 - MIR SINE MIR -37 225 163 2368 221 45 50 chr3 164299303 164299962 -63224616 - MER21B LTR ERV1 -105 758 103 456 225 11 0 chr3 164300051 164300140 -63224438 - MER21B LTR ERV1 -773 90 1 180 0 0 0 chr3 164300393 164300413 -63224165 + (CATTT)n Simple_repeat Simple_repeat 2 21 0 735 228 13 32 chr3 164300527 164300685 -63223893 + MER5A DNA MER1_type 1 155 -34 6950 168 72 19 chr3 164301419 164302540 -63222038 + L1MC3 LINE L1 6168 7378 -407 6014 58 1 1 chr3 164302540 164303231 -63221347 + LTR8 LTR ERV1 1 691 0 6950 168 72 19 chr3 164303231 164303488 -63221090 + L1MC3 LINE L1 7378 7620 -165 850 147 29 69 chr3 164303496 164303700 -63220878 + L1MC2 LINE L1 6149 6344 0 2306 178 111 35 chr3 164303909 164303954 -63220624 - MLT2B3 LTR ERVL -1 553 513 872 104 8 0 chr3 164303954 164304088 -63220490 + (TAGA)n Simple_repeat Simple_repeat 3 137 0 2306 178 111 35 chr3 164304088 164304549 -63220029 - MLT2B3 LTR ERVL -41 513 9 185 304 0 0 chr3 164304825 164304871 -63219707 - MIR SINE MIR 0 262 217 476 301 222 14 chr3 164306488 164307059 -63217519 - L2 LINE L2 -50 3263 2546 208 271 51 0 chr3 164307062 164307121 -63217457 - L2 LINE L2 -1 3312 3251 353 353 60 13 chr3 164307185 164307335 -63217243 + L2 LINE L2 3099 3255 -17 1490 226 45 60 chr3 164307800 164307892 -63216686 + MLT1D LTR MaLR 1 93 -412 2248 106 7 0 chr3 164307892 164308194 -63216384 + AluSq SINE Alu 1 304 -9 1490 226 45 60 chr3 164308194 164308614 -63215964 + MLT1D LTR MaLR 93 505 0 623 257 28 0 chr3 164308869 164309048 -63215530 + MER115 DNA AcHobo 501 684 -9 1509 165 83 23 chr3 164309103 164309454 -63215124 + MER31-int LTR ERV1 4565 4936 0 2857 10 0 0 chr3 164309461 164309771 -63214807 - AluYb8 SINE Alu -8 310 1 28 0 0 0 chr3 164309922 164309950 -63214628 + AT_rich Low_complexity Low_complexity 1 28 0 278 107 18 0 chr3 164311493 164311549 -63213029 + (TA)n Simple_repeat Simple_repeat 1 57 0 780 280 76 26 chr3 164312136 164312479 -63212099 + LTR16A LTR ERVL 81 440 -10 189 0 0 0 chr3 164314386 164314407 -63210171 + (CTGTG)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chr3 164316258 164316279 -63208299 + AT_rich Low_complexity Low_complexity 1 21 0 201 39 0 0 chr3 164316594 164316620 -63207958 + (TG)n Simple_repeat Simple_repeat 1 26 0 250 208 0 0 chr3 164318011 164318059 -63206519 - Charlie8 DNA MER1_type -1008 1409 1362 231 247 47 59 chr3 164318137 164318222 -63206356 - Charlie8 DNA MER1_type -2333 84 1 440 294 130 0 chr3 164319729 164319906 -63204672 - MIR SINE MIR -6 256 57 725 62 0 0 chr3 164320914 164321011 -63203567 - L1PA5 LINE L1 -2134 4012 3916 10885 43 2 0 chr3 164321011 164323108 -63201470 + L1PA5 LINE L1 4037 6140 -14 238 303 101 0 chr3 164323461 164323550 -63201028 - MIR3 SINE MIR -42 166 69 1392 201 71 4 chr3 164325349 164325492 -63199086 - AluJo SINE Alu -26 286 154 219 69 0 0 chr3 164325492 164325521 -63199057 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 1392 201 71 4 chr3 164325521 164325645 -63198933 - AluJo SINE Alu -158 154 1 960 150 22 0 chr3 164325703 164325976 -63198602 + CT-rich Low_complexity Low_complexity 1 279 0 824 141 23 0 chr3 164325979 164326107 -63198471 - FLAM_C SINE Alu -2 131 1 368 286 206 24 chr3 164326498 164326750 -63197828 + MLT1H LTR MaLR 1 298 -251 442 254 79 0 chr3 164326787 164326913 -63197665 + MLT1H LTR MaLR 398 533 -16 2025 137 3 17 chr3 164327342 164327642 -63196936 - AluSx SINE Alu -16 296 1 378 42 0 0 chr3 164328134 164328182 -63196396 + (TG)n Simple_repeat Simple_repeat 2 49 0 185 309 0 18 chr3 164328234 164328289 -63196289 - L3 LINE CR1 -940 637 584 336 277 98 18 chr3 164329050 164329162 -63195416 - MIR SINE MIR -12 250 130 505 240 194 5 chr3 164329712 164329908 -63194670 + MIR SINE MIR 3 235 -27 641 320 23 53 chr3 164330823 164331257 -63193321 + L1MC/D LINE L1 4512 4932 -1214 444 212 35 56 chr3 164331597 164331688 -63192890 + L1MC/D LINE L1 5307 5384 -787 771 54 54 0 chr3 164331688 164331799 -63192779 + L1PA8 LINE L1 6053 6169 -3 444 212 35 56 chr3 164331799 164331896 -63192682 + L1MC/D LINE L1 5384 5482 -689 315 0 0 0 chr3 164332792 164332827 -63191751 + (TG)n Simple_repeat Simple_repeat 2 36 0 1848 199 21 12 chr3 164333919 164334245 -63190333 + MER63B DNA MER1_type 2 334 -728 2291 117 3 0 chr3 164334245 164334553 -63190025 - AluSq SINE Alu -4 309 1 1848 199 21 12 chr3 164334553 164334647 -63189931 + MER63B DNA MER1_type 334 426 -10 209 319 29 0 chr3 164334656 164334725 -63189853 + L2 LINE L2 3198 3268 -4 680 312 25 0 chr3 164335158 164335360 -63189218 + MIR SINE MIR 12 218 -44 208 279 23 0 chr3 164336022 164336065 -63188513 + L2 LINE L2 3208 3251 -21 661 219 88 103 chr3 164338400 164338486 -63186092 - MER5C DNA MER1_type 0 324 238 2376 95 0 0 chr3 164338486 164338782 -63185796 - AluSg SINE Alu -14 296 1 661 219 88 103 chr3 164338782 164339024 -63185554 - MER5C DNA MER1_type -86 238 1 2089 135 3 10 chr3 164340129 164340440 -63184138 - AluSx SINE Alu -3 309 1 978 99 40 176 chr3 164341682 164341954 -63182624 - L1MC2 LINE L1 -8 6336 6102 266 253 24 12 chr3 164342141 164342224 -63182354 + MIR SINE MIR 179 262 0 534 248 172 0 chr3 164343073 164343218 -63181360 - MER5A DNA MER1_type -10 179 10 352 340 7 14 chr3 164343261 164343405 -63181173 + MIR SINE MIR 88 230 -32 190 276 78 82 chr3 164344000 164344232 -63180346 + L2 LINE L2 2832 3062 -251 336 308 166 5 chr3 164344284 164344495 -63180083 + L1ME3 LINE L1 5751 5995 -167 811 161 0 7 chr3 164345291 164345428 -63179150 - AluJb SINE Alu -176 136 1 1323 231 50 97 chr3 164345494 164345527 -63179051 + MLT1H LTR MaLR 1 34 -515 1541 190 55 14 chr3 164345527 164345874 -63178704 + MLT1A1 LTR MaLR 5 365 0 1323 231 50 97 chr3 164345874 164346416 -63178162 + MLT1H LTR MaLR 34 549 0 2632 42 3 0 chr3 164346615 164346924 -63177654 - AluY SINE Alu -1 310 1 292 307 99 8 chr3 164348294 164348578 -63176000 - L1MB8 LINE L1 -242 5936 5632 251 236 14 0 chr3 164348586 164348658 -63175920 + (TA)n Simple_repeat Simple_repeat 2 74 0 425 278 74 96 chr3 164348758 164349180 -63175398 + L1ME LINE L1 4738 5143 -1003 2246 104 10 3 chr3 164349180 164349478 -63175100 + AluSx SINE Alu 3 302 -10 425 278 74 96 chr3 164349478 164349678 -63174900 + L1ME LINE L1 5143 5346 -800 261 283 9 19 chr3 164349779 164349885 -63174693 + L1ME LINE L1 5551 5655 -507 2159 124 50 14 chr3 164350719 164351081 -63173497 + THE1C LTR MaLR 1 375 0 725 236 122 63 chr3 164351328 164351549 -63173029 + MIR SINE MIR 16 237 -25 763 231 101 19 chr3 164352769 164352977 -63171601 + MIR SINE MIR 29 253 -9 394 310 165 20 chr3 164353237 164353630 -63170948 + L2 LINE L2 1890 2339 -975 186 351 21 21 chr3 164353632 164353726 -63170852 + L2 LINE L2 2671 2764 -550 824 204 25 0 chr3 164356356 164356518 -63168060 + AluJb SINE Alu 136 301 -11 1260 153 51 29 chr3 164357111 164357424 -63167154 - MER33 DNA MER1_type -4 320 1 26 0 0 0 chr3 164357945 164357971 -63166607 + AT_rich Low_complexity Low_complexity 1 26 0 2765 81 14 109 chr3 164358215 164358710 -63165868 + LTR7 LTR ERV1 1 448 -2 17880 111 6 28 chr3 164358712 164362127 -63162451 + HERVH LTR ERV1 1 3648 -4065 341 332 82 6 chr3 164362415 164362591 -63161987 + MIR3 SINE MIR 2 190 -70 284 271 19 116 chr3 164362800 164363007 -63161571 - MIR SINE MIR -55 207 21 686 227 170 48 chr3 164363019 164363248 -63161330 - MIR SINE MIR 0 262 6 612 209 109 70 chr3 164364613 164364814 -63159764 + MER63A DNA MER1_type 2 210 0 973 283 35 21 chr3 164364982 164365321 -63159257 + LTR16A LTR ERVL 97 440 -10 224 302 9 38 chr3 164365799 164365905 -63158673 + CT-rich Low_complexity Low_complexity 2 104 0 330 252 95 75 chr3 164366107 164366254 -63158324 - L2 LINE L2 0 3272 3123 976 81 0 0 chr3 164366519 164366655 -63157923 + L1MA2 LINE L1 6169 6304 0 36 23 0 0 chr3 164366655 164366698 -63157880 + AT_rich Low_complexity Low_complexity 1 43 0 38 51 0 0 chr3 164366739 164366798 -63157780 + AT_rich Low_complexity Low_complexity 1 59 0 267 281 42 10 chr3 164366800 164366896 -63157682 + Charlie7 DNA MER1_type 7 105 -2507 * 437 217 66 18 chr3 164366881 164367047 -63157531 + Charlie7 DNA MER1_type 2431 2604 -8 23 54 0 0 chr3 164367205 164367242 -63157336 + AT_rich Low_complexity Low_complexity 1 37 0 838 246 81 70 chr3 164367343 164367713 -63156865 + L2 LINE L2 2939 3312 -1 2102 148 0 0 chr3 164368975 164369272 -63155306 + AluSx SINE Alu 1 297 -15 187 405 26 7 chr3 164371088 164371241 -63153337 + MIR3 SINE MIR 53 208 0 550 280 58 137 chr3 164371329 164371832 -63152746 - L2 LINE L2 0 3313 2851 526 238 18 55 chr3 164371905 164372069 -63152509 + MER5B DNA MER1_type 21 178 0 185 290 32 16 chr3 164372101 164372163 -63152415 + MIR3 SINE MIR 125 187 -21 212 167 21 0 chr3 164372763 164372811 -63151767 + (TAG)n Simple_repeat Simple_repeat 2 50 0 316 319 29 29 chr3 164372818 164372956 -63151622 - MIR SINE MIR -27 235 98 28 61 0 0 chr3 164373742 164373791 -63150787 + AT_rich Low_complexity Low_complexity 1 49 0 542 278 40 60 chr3 164375593 164375845 -63148733 + MLT1L LTR MaLR 368 614 -1 196 347 144 30 chr3 164376121 164376288 -63148290 - L2 LINE L2 -1 3271 3086 284 392 8 46 chr3 164376710 164376973 -63147605 - L2 LINE L2 -421 2893 2641 189 0 0 0 chr3 164377434 164377455 -63147123 + (T)n Simple_repeat Simple_repeat 1 21 0 1230 257 101 37 chr3 164377706 164378142 -63146436 + LTR16B LTR ERVL 1 464 0 893 304 72 5 chr3 164380563 164380981 -63143597 + MLT1L LTR MaLR 168 613 -2 497 191 14 14 chr3 164382356 164382503 -63142075 + (CA)n Simple_repeat Simple_repeat 2 148 0 797 176 85 17 chr3 164382912 164383088 -63141490 - MER5A DNA MER1_type -1 188 1 313 299 79 0 chr3 164383687 164383814 -63140764 + MIR SINE MIR 68 204 -58 250 301 14 0 chr3 164383975 164384048 -63140530 + MIR SINE MIR 81 154 -108 249 83 0 0 chr3 164384056 164384092 -63140486 + (CA)n Simple_repeat Simple_repeat 2 37 0 638 247 177 0 chr3 164384119 164384277 -63140301 + MIR SINE MIR 34 219 -43 974 142 26 0 chr3 164384617 164384772 -63139806 - AluSg/x SINE Alu -9 303 145 1477 93 0 0 chr3 164384872 164385066 -63139512 + AluY SINE Alu 113 306 -5 346 248 55 28 chr3 164385602 164385711 -63138867 - MIR3 SINE MIR -25 183 72 269 119 0 179 chr3 164387363 164387518 -63137060 - AluJ/FRAM SINE Alu 0 368 226 332 309 166 7 chr3 164387806 164387945 -63136633 + MIR3 SINE MIR 42 202 -6 452 277 9 0 chr3 164388268 164388380 -63136198 + MIR3 SINE MIR 92 204 -4 741 148 0 49 chr3 164389233 164389375 -63135203 + FLAM_C SINE Alu 1 135 -8 1235 33 13 0 chr3 164389427 164389580 -63134998 - L1PA4 LINE L1 0 6155 6001 715 238 94 28 chr3 164392997 164393283 -63131295 + MER102b DNA MER1_type 37 341 0 275 284 0 0 chr3 164393579 164393653 -63130925 - MIR SINE MIR -116 146 73 485 248 9 9 chr3 164393701 164393814 -63130764 - MER81 DNA DNA -1 113 1 394 221 53 0 chr3 164396288 164396383 -63128195 - LTR16C LTR ERVL 0 491 392 6862 202 51 19 chr3 164400438 164402670 -63121908 - L1PB2 LINE L1 0 6151 3700 2204 134 3 0 chr3 164402670 164402977 -63121601 - AluSx SINE Alu -4 308 1 6862 202 51 19 chr3 164402977 164403426 -63121152 - L1PB2 LINE L1 -2451 3700 3267 716 208 59 115 chr3 164404172 164404364 -63120214 + L1MC5 LINE L1 7432 7633 -328 490 192 10 0 chr3 164404364 164404463 -63120115 + L1PB4 LINE L1 6056 6155 -1 716 208 59 115 chr3 164404463 164404793 -63119785 + L1MC5 LINE L1 7633 7925 -36 964 181 40 11 chr3 164406777 164406954 -63117624 + MER5A DNA MER1_type 7 188 -1 1320 184 128 41 chr3 164407074 164407199 -63117379 - MER93b LTR ERV1 0 373 260 2225 125 0 3 chr3 164407199 164407510 -63117068 - AluSg SINE Alu 0 310 1 1320 184 128 41 chr3 164407510 164407727 -63116851 - MER93b LTR ERV1 -113 260 1 225 178 0 0 chr3 164407876 164407921 -63116657 + T-rich Low_complexity Low_complexity 1 45 0 388 321 15 0 chr3 164409589 164409720 -63114858 - MIR SINE MIR -72 190 58 2183 113 0 0 chr3 164410121 164410413 -63114165 - AluSg SINE Alu -18 292 1 350 249 187 86 chr3 164411213 164411347 -63113231 - MLT1J LTR MaLR -21 594 475 2572 58 0 7 chr3 164411347 164411656 -63112922 - AluY SINE Alu -4 307 1 350 249 187 86 chr3 164411656 164411847 -63112731 - MLT1J LTR MaLR -140 475 234 724 300 74 0 chr3 164413196 164413439 -63111139 - MIR SINE MIR 0 262 2 1266 232 195 45 chr3 164413974 164414491 -63110087 - MLT1G1 LTR MaLR 0 595 1 438 198 0 0 chr3 164414553 164414639 -63109939 - MLT1G1 LTR MaLR -509 86 1 279 79 0 0 chr3 164414765 164414803 -63109775 + (TG)n Simple_repeat Simple_repeat 2 39 0 619 210 131 39 chr3 164415007 164415534 -63109044 - L1MC4a LINE L1 -728 5428 5303 37 0 0 0 chr3 164415950 164415987 -63108591 + AT_rich Low_complexity Low_complexity 1 37 0 3470 173 107 58 chr3 164416002 164416931 -63107647 - LTR13 LTR ERVK -33 974 1 1956 113 3 53 chr3 164417260 164417407 -63107171 + AluSx SINE Alu 1 127 -185 2167 118 0 10 chr3 164417407 164417712 -63106866 + AluSx SINE Alu 1 302 -10 1956 113 3 53 chr3 164417712 164417865 -63106713 + AluSx SINE Alu 127 286 -26 816 194 12 6 chr3 164419382 164419547 -63105031 - MLT1A1 LTR MaLR -22 343 178 350 145 0 14 chr3 164419578 164419647 -63104931 + (TCC)n Simple_repeat Simple_repeat 3 70 0 650 232 7 0 chr3 164419647 164419785 -63104793 - MLT1A1 LTR MaLR -235 139 1 494 299 158 6 chr3 164420090 164420267 -63104311 + MIR SINE MIR 58 261 -1 251 193 35 0 chr3 164421000 164421057 -63103521 + L1MB8 LINE L1 6067 6125 -53 738 126 0 0 chr3 164421057 164421168 -63103410 + AluSq/x SINE Alu 1 111 -201 525 101 10 50 chr3 164421172 164421258 -63103320 + AluSg/x SINE Alu 217 300 -12 323 172 0 0 chr3 164421258 164421316 -63103262 + L1MB7 LINE L1 6115 6172 -12 525 101 10 50 chr3 164421316 164421328 -63103250 + AluSg/x SINE Alu 300 311 -1 2186 130 0 0 chr3 164421974 164422274 -63102304 + AluSx SINE Alu 1 300 -12 2518 153 29 2 chr3 164422469 164422886 -63101692 + MSTA LTR MaLR 1 428 0 238 226 35 131 chr3 164423821 164423887 -63100691 - MIR SINE MIR -25 237 166 2130 114 4 0 chr3 164423887 164424168 -63100410 - AluSx SINE Alu -30 282 1 238 226 35 131 chr3 164424168 164424275 -63100303 - MIR SINE MIR -96 166 84 180 77 0 0 chr3 164424692 164424718 -63099860 + (TG)n Simple_repeat Simple_repeat 2 27 0 303 363 65 0 chr3 164425467 164425591 -63098987 + MIR SINE MIR 19 150 -58 11175 68 11 1 chr3 164425855 164427337 -63097241 - HERVL LTR ERVL -2107 3547 2051 252 317 58 83 chr3 164428439 164428679 -63095899 - L3 LINE CR1 -37 1540 1307 22 0 0 0 chr3 164429162 164429184 -63095394 + AT_rich Low_complexity Low_complexity 1 22 0 311 283 19 0 chr3 164429359 164429465 -63095113 + L1ME3A LINE L1 6056 6163 -7 2149 63 0 76 chr3 164430046 164430362 -63094216 + AluY SINE Alu 1 292 -19 1207 228 120 12 chr3 164431691 164431851 -63092727 + MLT1A2 LTR MaLR 1 142 -232 1371 175 37 0 chr3 164431851 164432097 -63092481 + L1PA15 LINE L1 5908 6162 -3 1207 228 120 12 chr3 164432097 164432270 -63092308 + MLT1A2 LTR MaLR 142 370 -4 1239 81 12 0 chr3 164432442 164432602 -63091976 + AluSp SINE Alu 1 162 -151 868 149 0 0 chr3 164432702 164432836 -63091742 + AluSg/x SINE Alu 177 310 0 384 257 99 0 chr3 164432863 164432964 -63091614 - L2 LINE L2 0 3313 3203 * 480 377 19 19 chr3 164432960 164433172 -63091406 - L2 LINE L2 -453 2861 2650 565 180 36 9 chr3 164433996 164434107 -63090471 - MER81 DNA DNA 0 114 1 892 250 20 5 chr3 164434888 164435088 -63089490 + MIR SINE MIR 39 241 -21 550 246 7 7 chr3 164435135 164435273 -63089305 + MLT2F LTR ERVL 1 138 -525 403 277 242 25 chr3 164435306 164435620 -63088958 + MLT2F LTR ERVL 280 661 -2 311 341 86 20 chr3 164435625 164435880 -63088698 - L1 LINE L1 -1633 4513 4242 970 204 67 32 chr3 164436709 164436947 -63087631 + MER58B DNA MER1_type 47 298 -2122 804 181 0 0 chr3 164436947 164437080 -63087498 + FLAM_A SINE Alu 1 133 0 970 204 67 32 chr3 164437080 164437126 -63087452 + MER58B DNA MER1_type 298 341 0 282 237 0 0 chr3 164437194 164437253 -63087325 - MER20 DNA MER1_type -152 67 9 202 305 0 17 chr3 164437280 164437339 -63087239 + G-rich Low_complexity Low_complexity 4 61 0 416 236 31 8 chr3 164437881 164438008 -63086570 - LTR37B LTR ERV1 -12 456 327 516 219 9 163 chr3 164438011 164438226 -63086352 - MER82 DNA MER2_type 0 653 472 237 185 11 76 chr3 164438237 164438329 -63086249 - LTR37B LTR ERV1 -148 320 235 683 218 67 11 chr3 164440102 164440281 -63084297 + MER5A DNA MER1_type 1 189 0 392 274 179 33 chr3 164440870 164441289 -63083289 + MLT1J LTR MaLR 1 480 -31 234 213 27 93 chr3 164441376 164441451 -63083127 + L2 LINE L2 3244 3313 0 206 313 16 31 chr3 164441904 164441968 -63082610 - L2 LINE L2 -5 3267 3205 264 330 11 0 chr3 164442114 164442202 -63082376 + MIR SINE MIR 153 241 -21 244 206 27 41 chr3 164443089 164443162 -63081416 + CT-rich Low_complexity Low_complexity 4 75 0 450 229 61 69 chr3 164444011 164444142 -63080436 + MER91B DNA MER1_type 1 130 -60 218 271 21 83 chr3 164444168 164444264 -63080314 + MER91B DNA MER1_type 100 189 -1 239 273 15 15 chr3 164444926 164444992 -63079586 - L2 LINE L2 -8 3264 3199 651 23 0 35 chr3 164446341 164446428 -63078150 + AluY SINE Alu 1 84 -227 8672 63 27 1 chr3 164446528 164447674 -63076904 + HERVL-A1 LTR ERVL 4479 5654 0 2558 111 39 5 chr3 164447674 164448061 -63076517 + MLT2A1 LTR ERVL 1 400 -44 303 93 0 0 chr3 164448062 164448105 -63076473 + (TG)n Simple_repeat Simple_repeat 2 44 0 226 114 91 0 chr3 164448106 164448150 -63076428 + MLT2A1 LTR ERVL 390 437 -7 208 153 0 34 chr3 164448819 164448878 -63075700 + A-rich Low_complexity Low_complexity 3 59 0 692 170 47 0 chr3 164448903 164449074 -63075504 - MER53 DNA DNA -7 182 4 484 253 66 14 chr3 164449175 164449547 -63075031 - LTR16C LTR ERVL -3 488 72 279 270 88 75 chr3 164450237 164450396 -63074182 + L2 LINE L2 3153 3313 0 5166 196 72 39 chr3 164450485 164451906 -63072672 + L1MCa LINE L1 3 1469 -4957 15537 182 54 8 chr3 164451925 164452069 -63072509 - L1MA2 LINE L1 -7 7716 7580 1526 203 14 7 chr3 164452069 164452360 -63072218 + AluJb SINE Alu 1 293 -19 15537 182 54 8 chr3 164452360 164458893 -63065685 - L1MA2 LINE L1 -143 7580 719 838 171 27 99 chr3 164458891 164458958 -63065620 - L1MA2 LINE L1 -7344 221 151 * 1914 106 4 0 chr3 164458958 164459232 -63065346 + AluSg SINE Alu 38 312 0 838 171 27 99 chr3 164459232 164459385 -63065193 - L1MA2 LINE L1 -7414 151 16 * 2610 179 110 31 chr3 164459383 164460208 -63064370 + L1MCa LINE L1 1644 2418 -4008 407 281 0 0 chr3 164460196 164460324 -63064254 + L1MCa LINE L1 3051 3178 -3248 * 2740 243 19 119 chr3 164460446 164462094 -63062484 + L1MCa LINE L1 3967 5449 -977 1547 174 0 42 chr3 164462102 164462413 -63062165 + L1MC1 LINE L1 6030 6327 -6 2854 19 0 0 chr3 164462582 164462895 -63061683 + AluYb8 SINE Alu 1 313 -5 352 189 0 0 chr3 164463048 164463122 -63061456 + L1PB4 LINE L1 6083 6156 0 437 207 13 15 chr3 164463179 164463280 -63061298 + L1MB8 LINE L1 5891 5990 -174 22 0 0 0 chr3 164463468 164463490 -63061088 + AT_rich Low_complexity Low_complexity 1 22 0 238 292 135 11 chr3 164464184 164464273 -63060305 + MIR SINE MIR 33 132 -76 24 53 0 0 chr3 164464795 164464833 -63059745 + AT_rich Low_complexity Low_complexity 1 38 0 225 186 163 0 chr3 164465200 164465243 -63059335 - MER58 DNA MER1_type -161 54 5 5443 126 54 7 chr3 164465455 164466478 -63058100 - L1PA14 LINE L1 0 6161 5112 259 292 41 7 chr3 164466483 164466617 -63057961 - L1MC/D LINE L1 -536 5585 5469 371 152 25 40 chr3 164467257 164467412 -63057166 - HsTC2 DNA Tc2 -109 1789 1608 296 45 159 0 chr3 164467437 164467481 -63057097 - MADE1 DNA Mariner -29 51 1 1341 191 33 4 chr3 164467481 164467933 -63056645 - L1MB4 LINE L1 -60 6120 5575 334 88 18 0 chr3 164468366 164468423 -63056155 + L1PA16 LINE L1 6100 6157 -9 470 294 70 7 chr3 164468499 164468642 -63055936 - MIR SINE MIR -98 164 13 416 213 221 29 chr3 164469673 164469809 -63054769 - MER69A DNA AcHobo 0 177 16 1773 110 4 8 chr3 164469871 164470116 -63054462 - AluSx SINE Alu -65 247 4 343 172 50 91 chr3 164470322 164470421 -63054157 - L1MC3 LINE L1 -1430 6355 6261 1011 243 82 47 chr3 164470498 164471015 -63053563 + MLT1H LTR MaLR 10 585 -5 1726 150 3 55 chr3 164471492 164471818 -63052760 + AluJb SINE Alu 1 309 -3 279 0 0 0 chr3 164471846 164471877 -63052701 + (TG)n Simple_repeat Simple_repeat 2 32 0 2145 137 0 0 chr3 164472915 164473215 -63051363 - AluSx SINE Alu -12 300 1 933 158 42 0 chr3 164474659 164474824 -63049754 - MER3 DNA MER1_type -1 208 37 501 291 87 50 chr3 164475880 164476203 -63048375 + L2 LINE L2 2977 3311 -2 883 147 0 0 chr3 164477037 164477166 -63047412 + AluSg/x SINE Alu 155 283 -27 305 130 0 0 chr3 164477166 164477212 -63047366 + Alu SINE Alu 239 284 -17 437 97 0 0 chr3 164477212 164477284 -63047294 + Alu SINE Alu 237 308 -1 579 207 0 16 chr3 164478042 164478163 -63046415 + L1ME1 LINE L1 39 157 -6239 * 1393 263 131 12 chr3 164478159 164478844 -63045734 + L1ME1 LINE L1 707 1473 -4923 1843 243 37 37 chr3 164478971 164479481 -63045097 - L1MDa LINE L1 -6014 526 17 2655 239 56 36 chr3 164479484 164480503 -63044075 + L1ME1 LINE L1 4918 5969 -266 1407 243 27 44 chr3 164480503 164480977 -63043601 + MLT1C LTR MaLR 2 467 0 2655 239 56 36 chr3 164480977 164481248 -63043330 + L1ME1 LINE L1 5969 6233 -2 728 208 46 17 chr3 164481421 164481594 -63042984 + FRAM SINE Alu 1 170 -6 641 262 105 9 chr3 164481594 164481804 -63042774 + MER102a DNA MER1_type 100 329 -1 3882 142 21 5 chr3 164482814 164483478 -63041100 + L1MC1 LINE L1 5659 6333 0 363 331 94 6 chr3 164483529 164483689 -63040889 + MIR SINE MIR 23 196 -66 388 319 117 34 chr3 164484551 164484902 -63039676 + MLT1L LTR MaLR 221 600 -15 197 333 61 39 chr3 164485823 164486003 -63038575 + L2 LINE L2 2259 2442 -872 24 0 0 0 chr3 164486957 164486981 -63037597 + AT_rich Low_complexity Low_complexity 1 24 0 363 232 123 26 chr3 164487054 164487209 -63037369 + L1ME4a LINE L1 5952 6121 0 512 183 241 29 chr3 164487444 164487581 -63036997 - AluJo SINE Alu 0 302 137 2523 119 3 0 chr3 164487581 164487935 -63036643 - THE1A LTR MaLR 0 355 1 11052 118 8 2 chr3 164487935 164489492 -63035086 - THE1A-int LTR MaLR 0 1580 15 2736 81 3 0 chr3 164489492 164489840 -63034738 - THE1A LTR MaLR 0 355 7 20819 75 8 2 chr3 164489863 164492606 -63031972 - L1PA5 LINE L1 -3377 2769 11 20376 43 23 0 chr3 164492608 164495948 -63028630 + L1PA5 LINE L1 2787 6147 -7 677 189 16 0 chr3 164495953 164496080 -63028498 - AluJo SINE Alu -169 133 5 754 276 40 25 chr3 164496115 164496438 -63028140 + L1MC4a LINE L1 5616 5943 -1865 659 301 145 36 chr3 164496561 164497344 -63027234 + L2 LINE L2 2444 3313 0 354 156 0 0 chr3 164497569 164497633 -63026945 + (TG)n Simple_repeat Simple_repeat 2 65 0 324 78 59 0 chr3 164497941 164497992 -63026586 - Alu SINE Alu -5 296 243 3488 147 43 11 chr3 164498093 164498739 -63025839 + L1P LINE L1 2581 3247 -2899 2693 152 46 4 chr3 164498816 164499295 -63025283 - Tigger1 DNA MER2_type -1421 997 499 1581 171 50 4 chr3 164499413 164499693 -63024885 - AluSx SINE Alu -19 293 1 554 128 15 23 chr3 164499756 164499889 -63024689 + (TCTA)n Simple_repeat Simple_repeat 1 132 0 551 51 13 0 chr3 164499920 164499999 -63024579 + (TAGA)n Simple_repeat Simple_repeat 1 80 0 670 280 72 48 chr3 164500809 164501473 -63023105 - L1MC5 LINE L1 -20 7941 7262 24 32 0 0 chr3 164502927 164502958 -63021620 + AT_rich Low_complexity Low_complexity 1 31 0 547 273 25 85 chr3 164503938 164504257 -63020321 + MER102a DNA MER1_type 26 325 -5 282 229 12 0 chr3 164506876 164506959 -63017619 + (TAA)n Simple_repeat Simple_repeat 3 86 0 223 52 17 69 chr3 164506959 164507017 -63017561 + (TTATA)n Simple_repeat Simple_repeat 5 59 0 2154 145 30 0 chr3 164507048 164507386 -63017192 + MER7A DNA MER2_type 1 346 0 243 309 31 41 chr3 164507467 164507564 -63017014 + L2 LINE L2 3168 3263 -9 380 20 20 0 chr3 164508088 164508137 -63016441 + (CA)n Simple_repeat Simple_repeat 1 50 0 870 216 141 57 chr3 164508244 164508698 -63015880 - L1MC5 LINE L1 -50 7911 7420 365 329 88 75 chr3 164509776 164510632 -63013946 + L2 LINE L2 2398 3261 -11 871 245 25 5 chr3 164511465 164511669 -63012909 + MIR SINE MIR 34 241 -21 191 290 58 29 chr3 164511878 164511947 -63012631 - MIR SINE MIR -103 105 35 29 47 0 0 chr3 164513489 164513532 -63011046 + AT_rich Low_complexity Low_complexity 1 43 0 613 320 90 4 chr3 164513823 164514101 -63010477 - L1MC4 LINE L1 -1040 7002 6701 21 0 0 0 chr3 164514343 164514364 -63010214 + AT_rich Low_complexity Low_complexity 1 21 0 692 186 128 169 chr3 164515824 164516214 -63008364 - LTR37B LTR ERV1 0 468 98 1657 188 3 0 chr3 164516214 164516501 -63008077 - AluJb SINE Alu -24 288 1 692 186 128 169 chr3 164516501 164516572 -63008006 - LTR37B LTR ERV1 -370 98 26 2342 89 7 0 chr3 164516590 164516893 -63007685 - AluSx SINE Alu -7 305 1 21 57 0 0 chr3 164516970 164517005 -63007573 + AT_rich Low_complexity Low_complexity 1 35 0 29 0 0 0 chr3 164517200 164517229 -63007349 + AT_rich Low_complexity Low_complexity 1 29 0 232 226 0 0 chr3 164518200 164518253 -63006325 + CT-rich Low_complexity Low_complexity 2 54 0 313 273 80 40 chr3 164519301 164519451 -63005127 + MIR SINE MIR 95 250 -12 2997 154 74 25 chr3 164520515 164521124 -63003454 - L1MC3 LINE L1 -18 7767 7129 285 287 17 9 chr3 164521196 164521311 -63003267 - L1ME4a LINE L1 -212 5909 5794 284 265 0 0 chr3 164521637 164521705 -63002873 + LTR37B LTR ERV1 7 74 -394 950 188 100 16 chr3 164521779 164522029 -63002549 + LTR37B LTR ERV1 198 468 0 910 198 4 117 chr3 164522379 164522626 -63001952 + MER58A DNA MER1_type 1 219 -5 2239 98 3 0 chr3 164522704 164522999 -63001579 + AluSx SINE Alu 1 296 -16 26 0 0 0 chr3 164523119 164523145 -63001433 + AT_rich Low_complexity Low_complexity 1 26 0 2221 109 3 0 chr3 164524370 164524672 -62999906 + AluSx SINE Alu 1 303 -9 388 201 271 21 chr3 164526410 164526554 -62998024 + MER5A DNA MER1_type 10 189 0 2291 110 0 0 chr3 164527304 164527614 -62996964 - AluSg SINE Alu 0 310 1 497 331 44 17 chr3 164528676 164528983 -62995595 + Charlie8 DNA MER1_type 1 1419 -998 654 157 0 0 chr3 164530930 164531038 -62993540 + FRAM SINE Alu 38 145 -31 333 68 0 0 chr3 164531041 164531085 -62993493 + (CGGGA)n Simple_repeat Simple_repeat 4 47 0 470 252 92 17 chr3 164531235 164531529 -62993049 - L1ME4a LINE L1 -177 5944 5629 217 343 30 0 chr3 164531530 164531629 -62992949 + L2 LINE L2 1872 1973 -1341 364 322 111 19 chr3 164531677 164531947 -62992631 + L2 LINE L2 2148 2442 -872 838 257 132 29 chr3 164532154 164532426 -62992152 - MER92C LTR ERV1 -254 300 1 322 325 98 0 chr3 164532426 164532549 -62992029 + L2 LINE L2 2620 2754 -560 1841 193 42 53 chr3 164533331 164533802 -62990776 + MER31B LTR ERV1 1 466 0 27 0 0 0 chr3 164533995 164534022 -62990556 + AT_rich Low_complexity Low_complexity 1 27 0 225 65 0 0 chr3 164534290 164534321 -62990257 + (TG)n Simple_repeat Simple_repeat 1 31 0 327 335 29 40 chr3 164534498 164534671 -62989907 - MIR SINE MIR -44 218 48 28 29 0 0 chr3 164535868 164535903 -62988675 + AT_rich Low_complexity Low_complexity 1 35 0 1201 252 61 48 chr3 164536517 164536973 -62987605 - LTR16B LTR ERVL -2 462 1 276 313 140 29 chr3 164537071 164537314 -62987264 + L2 LINE L2 2509 2778 -536 755 224 11 17 chr3 164537316 164537490 -62987088 + FRAM SINE Alu 2 174 -2 1957 145 7 0 chr3 164538227 164538524 -62986054 + AluSx SINE Alu 1 299 -13 324 0 0 0 chr3 164538566 164538602 -62985976 + (TG)n Simple_repeat Simple_repeat 2 37 0 239 222 0 0 chr3 164538751 164538796 -62985782 + CT-rich Low_complexity Low_complexity 1 45 0 208 297 16 0 chr3 164538796 164538860 -62985718 - L2 LINE L2 -5 3308 3244 21 0 0 0 chr3 164539009 164539030 -62985548 + AT_rich Low_complexity Low_complexity 1 21 0 1963 125 3 3 chr3 164539140 164539429 -62985149 + AluSx SINE Alu 4 292 -20 530 182 4 222 chr3 164539565 164539790 -62984788 - MER5B DNA MER1_type -1 177 2 4185 190 26 20 chr3 164539801 164540689 -62983889 - L1MB3 LINE L1 -2 6181 5289 797 261 110 41 chr3 164540993 164541509 -62983069 - MLT1H LTR MaLR -4 563 1 4289 89 40 8 chr3 164541535 164542627 -62981951 - MER11A LTR ERVK 0 1266 1 240 358 41 8 chr3 164543138 164543261 -62981317 + MIR SINE MIR 16 142 -66 222 37 0 0 chr3 164544118 164544145 -62980433 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 395 204 34 23 chr3 164544906 164544994 -62979584 + MIR SINE MIR 65 153 -109 2699 123 31 0 chr3 164544998 164545413 -62979165 + MSTC LTR MaLR 1 428 0 213 94 0 0 chr3 164545526 164545558 -62979020 + (A)n Simple_repeat Simple_repeat 1 32 0 23 54 0 0 chr3 164546639 164546676 -62977902 + AT_rich Low_complexity Low_complexity 1 37 0 382 348 56 0 chr3 164546694 164546872 -62977706 - MIR3 SINE MIR -14 194 7 246 247 41 10 chr3 164547192 164547289 -62977289 + Charlie7 DNA MER1_type 53 152 -2460 379 274 0 0 chr3 164547294 164547396 -62977182 + Charlie7 DNA MER1_type 2508 2609 -3 23 0 0 0 chr3 164548531 164548554 -62976024 + AT_rich Low_complexity Low_complexity 1 23 0 279 318 67 41 chr3 164548690 164548957 -62975621 + MLT1H LTR MaLR 13 286 -263 1553 239 66 30 chr3 164548989 164549455 -62975123 + MLT2B1 LTR ERVL 1 488 -32 294 50 0 0 chr3 164549455 164549495 -62975083 + (CA)n Simple_repeat Simple_repeat 2 41 0 1553 239 66 30 chr3 164549495 164549530 -62975048 + MLT2B1 LTR ERVL 488 520 0 312 368 5 61 chr3 164549589 164549801 -62974777 - MIR SINE MIR -56 206 7 4007 160 4 6 chr3 164550954 164551661 -62972917 - L1PA11 LINE L1 -1187 4959 4254 6129 104 7 13 chr3 164551661 164552881 -62971697 + L1PA11 LINE L1 4947 6158 -16 396 0 0 0 chr3 164553118 164553162 -62971416 + (CA)n Simple_repeat Simple_repeat 2 45 0 189 389 48 29 chr3 164553293 164553501 -62971077 + L2 LINE L2 2288 2499 -815 248 307 45 0 chr3 164553627 164553715 -62970863 + L2 LINE L2 2549 2640 -674 306 288 108 2 chr3 164553787 164553899 -62970679 - MIR SINE MIR -74 134 11 292 221 78 0 chr3 164554558 164554635 -62969943 + Charlie7 DNA MER1_type 19 101 -2511 1081 315 64 20 chr3 164555591 164556283 -62968295 - L1MC4a LINE L1 -707 5447 5301 214 275 116 0 chr3 164556976 164557045 -62967533 - MIR SINE MIR -63 145 70 1439 261 53 26 chr3 164557114 164557604 -62966974 + MLT1L LTR MaLR 113 615 0 1572 217 58 16 chr3 164557970 164558009 -62966569 - L1 LINE L1 -1847 4299 4263 249 33 0 0 chr3 164558009 164558039 -62966539 + (TG)n Simple_repeat Simple_repeat 2 31 0 1572 217 58 16 chr3 164558039 164558446 -62966132 - L1 LINE L1 -1883 4263 3834 200 288 68 83 chr3 164558942 164559074 -62965504 + L2 LINE L2 3184 3313 0 23 68 0 0 chr3 164559500 164559544 -62965034 + AT_rich Low_complexity Low_complexity 1 44 0 655 311 43 57 chr3 164559591 164560028 -62964550 - LTR16B LTR ERVL 0 464 34 1290 170 55 143 chr3 164560228 164560628 -62963950 - MLT1A1 LTR MaLR 0 365 1 310 298 114 48 chr3 164560836 164561064 -62963514 - MIR SINE MIR 0 262 20 1352 112 0 10 chr3 164561529 164561735 -62962843 + L1PA13 LINE L1 5959 6162 -1 23 54 0 0 chr3 164561910 164561947 -62962631 + AT_rich Low_complexity Low_complexity 1 37 0 435 292 60 52 chr3 164562051 164562841 -62961737 - L1ME LINE L1 -448 5722 4912 1717 205 15 15 chr3 164562874 164563215 -62961363 + MLT2D LTR ERVL 6 346 -68 233 57 29 0 chr3 164563224 164563259 -62961319 + (TAGA)n Simple_repeat Simple_repeat 2 37 0 2233 140 36 14 chr3 164563290 164563646 -62960932 + THE1B LTR MaLR 1 364 0 483 293 133 0 chr3 164563662 164563979 -62960599 - L1ME LINE L1 -1281 4865 4507 604 322 11 49 chr3 164564164 164564428 -62960150 + MLT1J LTR MaLR 30 283 -228 299 318 30 51 chr3 164564623 164564911 -62959667 - L1 LINE L1 -2374 3772 3490 2151 96 0 3 chr3 164564911 164565202 -62959376 - AluY SINE Alu -21 290 1 299 318 30 51 chr3 164565202 164565246 -62959332 - L1 LINE L1 -2656 3490 3447 392 250 109 8 chr3 164566361 164566489 -62958089 - MIR SINE MIR -1 261 121 6986 183 129 26 chr3 164568714 164570252 -62954326 + MER52A LTR ERV1 1 1755 0 621 40 0 0 chr3 164570451 164570527 -62954051 + (TG)n Simple_repeat Simple_repeat 1 76 0 180 214 11 22 chr3 164571148 164571237 -62953341 + (TA)n Simple_repeat Simple_repeat 1 88 0 1175 144 0 6 chr3 164571688 164571869 -62952709 + THE1C LTR MaLR 9 188 -187 217 206 14 14 chr3 164572284 164572357 -62952221 + GA-rich Low_complexity Low_complexity 3 75 0 1220 231 42 50 chr3 164572928 164573305 -62951273 + MLT1A2 LTR MaLR 1 374 0 242 291 58 0 chr3 164573576 164573662 -62950916 - L3 LINE CR1 -852 725 635 318 260 164 27 chr3 164573692 164573838 -62950740 + MER117 DNA MER1_type 5 170 -27 832 77 60 0 chr3 164574752 164574920 -62949658 + (TAGA)n Simple_repeat Simple_repeat 1 178 0 1911 135 24 0 chr3 164575636 164575933 -62948645 - MLT2A2 LTR ERVL -149 304 1 7310 38 15 0 chr3 164576362 164577514 -62947064 - L1PA3 LINE L1 0 6155 4997 11634 33 2 0 chr3 164577514 164578928 -62945650 + L1P LINE L1 2879 4295 -1851 461 110 11 11 chr3 164579029 164579120 -62945458 + L1P LINE L1 4941 5028 -1118 263 388 0 25 chr3 164579245 164579366 -62945212 - MIR SINE MIR -104 158 41 23 0 0 0 chr3 164579603 164579626 -62944952 + AT_rich Low_complexity Low_complexity 1 23 0 213 39 0 0 chr3 164581367 164581393 -62943185 + (TTTTTG)n Simple_repeat Simple_repeat 5 30 0 210 37 0 0 chr3 164581492 164581519 -62943059 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 221 333 25 12 chr3 164581622 164581703 -62942875 - L2 LINE L2 -2 3270 3189 24 32 0 0 chr3 164581859 164581890 -62942688 + AT_rich Low_complexity Low_complexity 1 31 0 308 275 203 7 chr3 164582149 164582287 -62942291 + L1M4 LINE L1 4457 4621 -1525 528 164 57 101 chr3 164582300 164582348 -62942230 - L1MA9 LINE L1 0 6312 6263 2278 95 7 0 chr3 164582348 164582642 -62941936 - AluSc SINE Alu -13 296 1 528 164 57 101 chr3 164582642 164582752 -62941826 - L1MA9 LINE L1 -49 6263 6161 191 163 0 23 chr3 164582752 164582795 -62941783 + CT-rich Low_complexity Low_complexity 4 45 0 978 132 10 6 chr3 164582797 164582974 -62941604 - L1MA9 LINE L1 -14 6175 5993 454 109 0 0 chr3 164582974 164583038 -62941540 + L1M1 LINE L1 5559 5622 -680 * 1075 122 0 85 chr3 164583036 164583152 -62941426 - L1MA9 LINE L1 -526 5786 5691 6369 78 34 0 chr3 164583152 164584078 -62940500 + L1PA10 LINE L1 5208 6164 -4 1075 122 0 85 chr3 164584078 164584150 -62940428 - L1MA9 LINE L1 -621 5691 5614 5994 191 72 31 chr3 164584156 164585792 -62938786 + L1M2 LINE L1 2839 4542 -1604 963 243 9 18 chr3 164585792 164586018 -62938560 + AluJo SINE Alu 3 226 -86 3987 187 48 3 chr3 164586038 164587075 -62937503 + L1M2 LINE L1 4533 5614 -698 273 267 33 20 chr3 164587077 164587227 -62937351 - Charlie7 DNA MER1_type -15 2597 2446 297 327 0 0 chr3 164587229 164587336 -62937242 - Charlie7 DNA MER1_type -2504 108 2 2158 61 40 4 chr3 164588261 164588539 -62936039 + AluY SINE Alu 1 288 -23 215 253 189 11 chr3 164589850 164589945 -62934633 + MER5A DNA MER1_type 2 113 -76 269 230 122 0 chr3 164590904 164590978 -62933600 + MLT1J LTR MaLR 1 83 -428 22 0 0 0 chr3 164591343 164591365 -62933213 + AT_rich Low_complexity Low_complexity 1 22 0 22 99 0 0 chr3 164591646 164591717 -62932861 + AT_rich Low_complexity Low_complexity 1 71 0 650 229 70 40 chr3 164591745 164591946 -62932632 + MER63A DNA MER1_type 2 208 -2 2431 118 22 0 chr3 164592502 164592858 -62931720 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr3 164593109 164593132 -62931446 + AT_rich Low_complexity Low_complexity 1 23 0 666 211 173 0 chr3 164594098 164594254 -62930324 + MER58A DNA MER1_type 42 224 0 187 233 23 105 chr3 164595046 164595132 -62929446 + MIR SINE MIR 86 164 -98 181 197 174 91 chr3 164595172 164595304 -62929274 - MIR SINE MIR 0 262 120 693 295 75 18 chr3 164595310 164595537 -62929041 - MIR SINE MIR -21 241 2 894 158 38 11 chr3 164597229 164597412 -62927166 - MER53 DNA DNA 0 189 2 497 230 86 69 chr3 164597620 164597794 -62926784 - MER5B DNA MER1_type 0 178 2 1501 294 150 14 chr3 164598050 164599004 -62925574 - L2 LINE L2 0 3313 2218 23 86 0 0 chr3 164599405 164599463 -62925115 + AT_rich Low_complexity Low_complexity 1 58 0 319 357 83 1 chr3 164599581 164599737 -62924841 + MIR3 SINE MIR 42 207 -31 550 171 29 9 chr3 164600346 164600451 -62924127 - ERVL LTR ERVL -954 4810 4704 340 125 107 0 chr3 164600453 164600509 -62924069 + ERVL LTR ERVL 4805 4866 -898 1180 197 44 109 chr3 164600514 164600899 -62923679 - MLT1A1 LTR MaLR -5 360 1 395 164 0 0 chr3 164600906 164600967 -62923611 + ERVL LTR ERVL 4872 4932 -832 961 222 50 35 chr3 164600967 164601228 -62923350 + MLT1C LTR MaLR 200 464 -3 22 0 0 0 chr3 164601892 164601914 -62922664 + AT_rich Low_complexity Low_complexity 1 22 0 392 213 49 41 chr3 164602566 164602688 -62921890 - MLT1J2 LTR MaLR -247 203 81 313 346 60 11 chr3 164603134 164603319 -62921259 - HAL1b LINE L1 -673 675 482 272 241 78 50 chr3 164603365 164603506 -62921072 - HAL1b LINE L1 -953 395 251 1478 273 93 10 chr3 164604036 164604725 -62919853 + L1MEc LINE L1 1012 1757 -4639 2995 218 139 20 chr3 164604748 164605652 -62918926 + Charlie1 DNA MER1_type 577 1588 -1173 1394 170 0 88 chr3 164605680 164605974 -62918604 + AluJo SINE Alu 7 274 -38 575 233 201 4 chr3 164605998 164606247 -62918331 + Charlie1 DNA MER1_type 1631 1928 -833 408 108 48 0 chr3 164606345 164606428 -62918150 - MER69 DNA AcHobo -44 2482 2396 2260 237 82 21 chr3 164606726 164607588 -62916990 - L1ME3A LINE L1 -68 6102 5184 2059 196 61 59 chr3 164607681 164607792 -62916786 + MER77 LTR ERV1 53 162 -443 2068 168 75 15 chr3 164607792 164608192 -62916386 - MSTA LTR MaLR -4 424 1 2059 196 61 59 chr3 164608192 164608621 -62915957 + MER77 LTR ERV1 162 594 -11 849 280 85 39 chr3 164608626 164609042 -62915536 - L1ME3A LINE L1 -1063 5083 4623 1786 171 7 0 chr3 164609042 164609347 -62915231 - AluJb SINE Alu -5 307 1 849 280 85 39 chr3 164609347 164609598 -62914980 - L1ME3A LINE L1 -1523 4623 4385 1556 183 43 4 chr3 164609819 164609973 -62914605 - AluJb SINE Alu -20 292 121 237 33 0 0 chr3 164609973 164610003 -62914575 + (TG)n Simple_repeat Simple_repeat 2 31 0 1556 183 43 4 chr3 164610003 164610127 -62914451 - AluJb SINE Alu -191 121 3 22 0 0 0 chr3 164610134 164610156 -62914422 + AT_rich Low_complexity Low_complexity 1 22 0 191 224 0 41 chr3 164611515 164611564 -62913014 + L2 LINE L2 3115 3161 -111 532 304 91 16 chr3 164612249 164612308 -62912270 + L2 LINE L2 2351 2404 -910 1275 149 152 65 chr3 164612308 164612644 -62911934 + MLT1A1 LTR MaLR 1 365 0 532 304 91 16 chr3 164612644 164612837 -62911741 + L2 LINE L2 2404 2622 -692 330 276 81 0 chr3 164612947 164613034 -62911544 + Charlie2 DNA MER1_type 207 300 -2482 1133 217 159 38 chr3 164613046 164613549 -62911029 + Charlie2 DNA MER1_type 1867 2450 -412 1112 198 68 0 chr3 164613549 164613771 -62910807 + MER8 DNA MER2_type 1 237 -2 1133 217 159 38 chr3 164613771 164613844 -62910734 + Charlie2 DNA MER1_type 2450 2513 -349 1067 181 23 5 chr3 164613854 164614069 -62910509 - MER20 DNA MER1_type 0 219 1 487 199 90 13 chr3 164614114 164614270 -62910308 + Charlie2 DNA MER1_type 2617 2784 -78 2215 82 0 7 chr3 164614332 164614625 -62909953 - AluSc SINE Alu -18 291 1 24 0 0 0 chr3 164617245 164617269 -62907309 + GC_rich Low_complexity Low_complexity 1 24 0 344 306 55 87 chr3 164617637 164617948 -62906630 + L1M2 LINE L1 526 826 -6023 314 125 62 0 chr3 164619975 164620023 -62904555 - Tigger1 DNA MER2_type -2074 344 294 249 299 68 17 chr3 164620473 164620590 -62903988 + L2 LINE L2 3158 3280 -33 1555 147 42 25 chr3 164621451 164621737 -62902841 - MER47A DNA MER2_type 0 366 76 2589 33 7 3 chr3 164621895 164622199 -62902379 + AluY SINE Alu 1 305 -6 315 89 0 36 chr3 164622649 164622705 -62901873 - L1MB7 LINE L1 -51 6133 6080 229 298 78 107 chr3 164623441 164623554 -62901024 + L2 LINE L2 2724 2839 -433 2035 138 13 3 chr3 164623554 164623852 -62900726 - AluJb SINE Alu -11 301 1 229 298 78 107 chr3 164623852 164624046 -62900532 + L2 LINE L2 2839 3021 -251 25 31 0 0 chr3 164624170 164624202 -62900376 + AT_rich Low_complexity Low_complexity 1 32 0 232 388 75 9 chr3 164624432 164624646 -62899932 + L2 LINE L2 2835 3062 -210 22 0 0 0 chr3 164625752 164625774 -62898804 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 164625879 164625901 -62898677 + AT_rich Low_complexity Low_complexity 1 22 0 324 256 35 0 chr3 164626742 164626828 -62897750 - L2 LINE L2 -1 3271 3183 299 258 123 27 chr3 164628050 164628254 -62896324 - L1MC5 LINE L1 -44 7917 7681 2186 106 0 7 chr3 164628254 164628557 -62896021 - AluSx SINE Alu -11 301 1 299 258 123 27 chr3 164628557 164628612 -62895966 - L1MC5 LINE L1 -280 7681 7633 637 246 133 27 chr3 164628814 164629073 -62895505 + L1MC4 LINE L1 6972 7223 -738 547 227 117 49 chr3 164629132 164629379 -62895199 + L1MC5 LINE L1 7249 7512 -449 181 260 140 0 chr3 164629644 164629694 -62894884 - MIR SINE MIR -90 118 62 21 0 0 0 chr3 164631032 164631053 -62893525 + AT_rich Low_complexity Low_complexity 1 21 0 225 0 0 0 chr3 164631879 164631904 -62892674 + (TG)n Simple_repeat Simple_repeat 1 25 0 * 270 0 0 0 chr3 164631903 164631933 -62892645 + (GA)n Simple_repeat Simple_repeat 1 30 0 346 240 0 0 chr3 164632183 164632258 -62892320 + MIR SINE MIR 185 259 -3 226 246 188 0 chr3 164632571 164632640 -62891938 + MIR3 SINE MIR 112 193 -15 216 67 0 0 chr3 164632667 164632697 -62891881 + (TTG)n Simple_repeat Simple_repeat 2 31 0 717 92 0 0 chr3 164633929 164634049 -62890529 + (TA)n Simple_repeat Simple_repeat 1 120 0 377 301 24 8 chr3 164634202 164634325 -62890253 + MIR SINE MIR 68 192 -70 309 247 14 0 chr3 164634397 164634470 -62890108 - L3 LINE CR1 -155 1422 1349 2105 91 18 4 chr3 164635638 164635914 -62888664 - AluSx SINE Alu -32 280 1 22 35 0 0 chr3 164636208 164636237 -62888341 + AT_rich Low_complexity Low_complexity 1 29 0 194 324 120 34 chr3 164636678 164636872 -62887706 + L2 LINE L2 2795 3019 -253 264 137 0 0 chr3 164637011 164637062 -62887516 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 218 306 0 0 chr3 164637177 164637226 -62887352 + MIR SINE MIR 60 108 -154 5255 99 48 17 chr3 164637718 164638547 -62886031 + L1P LINE L1 1760 2614 -3532 198 0 0 0 chr3 164639223 164639245 -62885333 + (TTTTG)n Simple_repeat Simple_repeat 3 24 0 387 219 6 12 chr3 164639997 164640157 -62884421 + GA-rich Low_complexity Low_complexity 2 160 0 425 325 49 32 chr3 164640662 164640908 -62883670 + MIR SINE MIR 10 259 -3 919 219 11 0 chr3 164641551 164641738 -62882840 - MER5A DNA MER1_type 0 189 1 510 297 76 21 chr3 164644648 164644884 -62879694 + MIR SINE MIR 8 256 -6 868 146 113 121 chr3 164644936 164645176 -62879402 - L1MC3 LINE L1 -848 6937 6700 3335 185 45 9 chr3 164645206 164645892 -62878686 - L1MC3 LINE L1 -9 7776 7066 2338 98 3 0 chr3 164647253 164647591 -62876987 + AluSp SINE Alu 1 339 0 716 43 0 3 chr3 164647699 164647933 -62876645 + AluY SINE Alu 1 309 -2 954 233 35 9 chr3 164648273 164648501 -62876077 - MER110 LTR ERV1 -9 482 249 628 325 89 39 chr3 164648587 164649086 -62875492 + L2 LINE L2 2765 3300 -13 415 291 39 0 chr3 164649120 164649247 -62875331 + L1MC/D LINE L1 5559 5690 -2118 1255 262 119 27 chr3 164649261 164649772 -62874806 + MER68 LTR ERV1 5 562 0 207 114 0 0 chr3 164650170 164650205 -62874373 + (TTAAA)n Simple_repeat Simple_repeat 1 35 0 517 229 15 15 chr3 164650205 164650336 -62874242 - MER3 DNA MER1_type -78 131 1 458 286 14 29 chr3 164651507 164651647 -62872931 + LTR16C LTR ERVL 352 489 -2 349 363 60 39 chr3 164651648 164651932 -62872646 - L2 LINE L2 -1320 1994 1705 461 262 42 73 chr3 164652027 164652218 -62872360 + MLT1K LTR MaLR 381 565 -23 411 21 0 0 chr3 164652281 164652329 -62872249 + (CA)n Simple_repeat Simple_repeat 1 48 0 349 218 52 122 chr3 164652489 164652718 -62871860 - L1MC4 LINE L1 -1 8041 7829 519 270 169 0 chr3 164654080 164654258 -62870320 - MIR SINE MIR -6 256 49 1338 193 85 67 chr3 164654266 164654655 -62869923 + MSTD LTR MaLR 1 396 0 576 336 42 33 chr3 164654720 164655053 -62869525 + L2 LINE L2 2510 2845 -469 409 130 14 0 chr3 164655099 164655168 -62869410 + L1MA6 LINE L1 6123 6192 -108 343 247 12 24 chr3 164655383 164655468 -62869110 + L2 LINE L2 3189 3272 0 494 322 70 17 chr3 164656286 164656584 -62867994 - MLT1I LTR MaLR 0 409 96 2127 129 44 3 chr3 164657003 164657344 -62867234 + THE1A LTR MaLR 1 355 0 207 0 0 0 chr3 164657726 164657749 -62866829 + (TA)n Simple_repeat Simple_repeat 2 24 0 207 0 0 0 chr3 164657749 164657772 -62866806 + (T)n Simple_repeat Simple_repeat 1 23 0 796 258 110 60 chr3 164658970 164659314 -62865264 - L1ME4a LINE L1 -227 5894 5506 2353 104 0 0 chr3 164659314 164659621 -62864957 - AluSx SINE Alu -5 307 1 796 258 110 60 chr3 164659621 164659876 -62864702 - L1ME4a LINE L1 -615 5506 5265 204 259 32 96 chr3 164659994 164660088 -62864490 + MIR3 SINE MIR 75 163 -45 21 0 0 0 chr3 164660731 164660752 -62863826 + AT_rich Low_complexity Low_complexity 1 21 0 758 256 75 35 chr3 164661928 164662155 -62862423 - MIR SINE MIR 0 262 27 759 229 31 57 chr3 164663436 164663786 -62860792 + MER113 DNA MER1_type? 73 413 -108 2258 65 0 3 chr3 164663801 164664092 -62860486 - L1PA6 LINE L1 -2 6152 5863 1577 45 0 0 chr3 164664092 164664292 -62860286 + L1PA6 LINE L1 5660 5859 -295 879 237 32 36 chr3 164664763 164665048 -62859530 - MLT1D LTR MaLR 0 505 194 1131 239 51 18 chr3 164665093 164665427 -62859151 - MLT1A1 LTR MaLR -20 345 1 575 265 28 17 chr3 164665432 164665613 -62858965 - MLT1D LTR MaLR -322 183 1 567 268 98 0 chr3 164665666 164665819 -62858759 - MIR SINE MIR -29 233 66 196 311 14 27 chr3 164668921 164668995 -62855583 + MIR SINE MIR 75 147 -61 1958 170 18 67 chr3 164669826 164670079 -62854499 - MSTB LTR MaLR 0 426 201 2166 103 0 26 chr3 164670079 164670389 -62854189 - AluY SINE Alu -9 302 1 1958 170 18 67 chr3 164670389 164670571 -62854007 - MSTB LTR MaLR -225 201 12 656 131 0 10 chr3 164670581 164670680 -62853898 + FLAM_C SINE Alu 21 118 -25 23 68 0 0 chr3 164670784 164670828 -62853750 + AT_rich Low_complexity Low_complexity 1 44 0 229 258 81 81 chr3 164671536 164671722 -62852856 + MLT1L LTR MaLR 207 392 -223 421 244 79 8 chr3 164672018 164672145 -62852433 - MIR SINE MIR -70 192 57 205 236 28 69 chr3 164672780 164672852 -62851726 - L2 LINE L2 -35 3237 3169 21 0 0 0 chr3 164673134 164673155 -62851423 + AT_rich Low_complexity Low_complexity 1 21 0 249 174 0 0 chr3 164673186 164673233 -62851345 - L2 LINE L2 -307 2965 2921 431 203 318 47 chr3 164673607 164673755 -62850823 - MER5A DNA MER1_type -1 188 1 908 162 13 13 chr3 164673931 164674085 -62850493 - AluJb SINE Alu -5 307 154 415 286 14 21 chr3 164674543 164674683 -62849895 + MER5A DNA MER1_type 50 188 -1 208 222 0 22 chr3 164674854 164674899 -62849679 + CT-rich Low_complexity Low_complexity 1 44 0 733 218 35 73 chr3 164674963 164675279 -62849299 - Charlie4a DNA MER1_type -4 504 201 7358 89 5 10 chr3 164675319 164676382 -62848196 - MER11C LTR ERVK -14 1057 1 269 261 100 8 chr3 164676394 164676524 -62848054 - Charlie4a DNA MER1_type -319 189 48 337 307 83 25 chr3 164677561 164677802 -62846776 - MLT1J LTR MaLR -256 255 1 2127 139 0 3 chr3 164678309 164678610 -62845968 - AluSx SINE Alu -12 300 1 463 59 35 12 chr3 164679182 164679267 -62845311 - Tigger7 DNA MER2_type -103 2384 2298 * 1474 200 68 0 chr3 164679263 164679558 -62845020 - Tigger7 DNA MER2_type -2169 318 4 805 275 28 5 chr3 164679690 164679908 -62844670 - MIR SINE MIR -5 257 35 1773 167 6 16 chr3 164681234 164681545 -62843033 - AluJo SINE Alu 0 312 5 890 225 62 14 chr3 164681660 164681869 -62842709 + MER20 DNA MER1_type 1 219 0 1415 89 38 5 chr3 164682323 164682536 -62842042 - HSMAR1 DNA Mariner 0 1287 1068 1835 167 3 0 chr3 164683656 164683956 -62840622 - AluJb SINE Alu -10 302 2 318 208 39 34 chr3 164684240 164684347 -62840231 - MIR SINE MIR -76 132 27 239 329 0 0 chr3 164684614 164684693 -62839885 - L2 LINE L2 -527 2787 2709 379 322 91 7 chr3 164686006 164686149 -62838429 + L2 LINE L2 3117 3271 -1 298 327 122 0 chr3 164686278 164686434 -62838144 + MIR SINE MIR 74 248 -14 223 309 167 30 chr3 164686897 164687065 -62837513 + MIR SINE MIR 48 238 -24 499 96 0 36 chr3 164688353 164688436 -62836142 + MADE1 DNA Mariner 1 80 0 454 278 159 13 chr3 164688671 164688822 -62835756 - MER5A DNA MER1_type 0 189 17 303 354 28 21 chr3 164688825 164688969 -62835609 + L1ME3A LINE L1 5792 5936 -234 22 56 0 0 chr3 164689415 164689451 -62835127 + AT_rich Low_complexity Low_complexity 1 36 0 249 328 74 0 chr3 164689960 164690082 -62834496 + L1ME LINE L1 5483 5613 -508 22 0 0 0 chr3 164690128 164690150 -62834428 + AT_rich Low_complexity Low_complexity 1 22 0 578 79 11 0 chr3 164690163 164690252 -62834326 + (TTTC)n Simple_repeat Simple_repeat 4 93 0 747 183 8 0 chr3 164690382 164690508 -62834070 - AluJo SINE Alu -65 247 121 704 166 0 60 chr3 164690511 164690662 -62833916 - FLAM_C SINE Alu -1 142 1 258 290 38 15 chr3 164690738 164690869 -62833709 - LTR16B LTR ERVL -22 442 309 5940 89 26 2 chr3 164691535 164692668 -62831910 + L1PA13 LINE L1 5004 6157 -6 208 217 0 0 chr3 164693513 164693559 -62831019 + (CAAAC)n Simple_repeat Simple_repeat 2 47 0 460 289 31 16 chr3 164693629 164693757 -62830821 + MIR SINE MIR 15 144 -118 207 191 0 21 chr3 164694112 164694159 -62830419 + (CAAA)n Simple_repeat Simple_repeat 3 48 0 228 184 0 0 chr3 164694423 164694472 -62830106 + CT-rich Low_complexity Low_complexity 4 52 0 2577 34 0 0 chr3 164694495 164694788 -62829790 - AluY SINE Alu -15 296 4 333 301 0 0 chr3 164694842 164694935 -62829643 + MIR SINE MIR 38 130 -78 212 267 17 0 chr3 164695359 164695419 -62829159 + GA-rich Low_complexity Low_complexity 2 62 0 487 252 126 28 chr3 164695828 164695971 -62828607 + MIR SINE MIR 8 164 -98 1137 235 62 10 chr3 164695987 164696457 -62828121 + MER77 LTR ERV1 41 595 -10 1484 135 97 84 chr3 164696504 164696874 -62827704 - THE1C LTR MaLR 0 375 1 292 258 22 22 chr3 164696893 164696982 -62827596 + MIR SINE MIR 159 247 -15 425 80 67 13 chr3 164697102 164697177 -62827401 + MER53 DNA DNA 111 189 0 192 400 48 0 chr3 164697193 164697298 -62827280 - MIR SINE MIR -66 142 33 300 286 143 0 chr3 164697766 164697878 -62826700 - MIR3 SINE MIR -51 157 30 222 330 75 0 chr3 164698010 164698116 -62826462 + MIR SINE MIR 12 125 -137 559 238 20 40 chr3 164699000 164699151 -62825427 + MER5B DNA MER1_type 6 153 -25 239 299 37 47 chr3 164699203 164699310 -62825268 - MER5B DNA MER1_type 0 178 73 382 329 65 6 chr3 164699635 164699805 -62824773 - MIR SINE MIR -18 244 65 895 242 57 12 chr3 164699811 164700055 -62824523 - LTR40a LTR ERVL -18 501 247 804 237 138 25 chr3 164700062 164700387 -62824191 + MLT1A1 LTR MaLR 2 363 -2 698 289 62 16 chr3 164700387 164700641 -62823937 - LTR40a LTR ERVL -253 266 1 1711 155 45 45 chr3 164700764 164701139 -62823439 - THE1C LTR MaLR 0 375 1 31 68 0 0 chr3 164701590 164701649 -62822929 + AT_rich Low_complexity Low_complexity 1 59 0 1261 213 90 0 chr3 164702576 164702844 -62821734 + AluJo SINE Alu 1 292 -20 2246 88 0 45 chr3 164703117 164703425 -62821153 + AluSq SINE Alu 1 294 -19 1267 270 86 94 chr3 164703722 164704445 -62820133 + HAL1 LINE L1 22 749 -1758 2499 80 0 0 chr3 164704445 164704746 -62819832 - AluSg SINE Alu -5 305 5 1267 270 86 94 chr3 164704746 164705512 -62819066 + HAL1 LINE L1 749 1499 -1008 792 244 6 0 chr3 164705549 164705725 -62818853 + MER58A DNA MER1_type 47 223 -1 524 305 11 0 chr3 164705730 164705904 -62818674 + HAL1 LINE L1 1529 1704 -803 272 222 0 0 chr3 164706346 164706418 -62818160 + HAL1 LINE L1 2312 2383 -124 2118 172 76 2 chr3 164706419 164706815 -62817763 + MSTB LTR MaLR 1 425 -1 2269 96 3 10 chr3 164706840 164707153 -62817425 - AluSq SINE Alu -2 311 1 313 146 0 0 chr3 164708144 164708192 -62816386 - Alu SINE Alu -10 292 245 24 53 0 0 chr3 164708585 164708623 -62815955 + AT_rich Low_complexity Low_complexity 1 38 0 414 301 111 35 chr3 164708819 164709292 -62815286 + HERVL LTR ERVL 3833 4313 -1172 256 319 109 33 chr3 164709392 164709602 -62814976 + MIR SINE MIR 35 260 -2 412 283 46 20 chr3 164709664 164709816 -62814762 - L2 LINE L2 0 3313 3158 902 367 19 4 chr3 164709986 164710471 -62814107 - L2 LINE L2 -1011 2303 1812 2477 246 80 59 chr3 164710692 164711881 -62812697 - L1MC5 LINE L1 -64 7897 6684 225 139 0 0 chr3 164711905 164711948 -62812630 + (A)n Simple_repeat Simple_repeat 1 43 0 1088 297 121 78 chr3 164712068 164713114 -62811464 - MER52A LTR ERV1 0 1755 666 23 54 0 0 chr3 164713322 164713359 -62811219 + AT_rich Low_complexity Low_complexity 1 37 0 956 295 63 46 chr3 164713560 164713812 -62810766 - L1MC4a LINE L1 -1742 6066 5820 2053 124 30 0 chr3 164713812 164714111 -62810467 - AluSx SINE Alu -4 308 1 956 295 63 46 chr3 164714111 164714447 -62810131 - L1MC4a LINE L1 -1988 5820 5468 378 0 0 0 chr3 164714611 164714653 -62809925 + (CA)n Simple_repeat Simple_repeat 2 43 0 22 56 0 0 chr3 164714757 164714793 -62809785 + AT_rich Low_complexity Low_complexity 1 36 0 413 269 10 0 chr3 164715204 164715308 -62809270 + FLAM_C SINE Alu 1 105 -38 468 384 25 8 chr3 164715482 164715719 -62808859 + LTR67 LTR ERVL 2 242 -315 573 245 27 27 chr3 164715866 164716054 -62808524 + LTR67 LTR ERVL 347 534 -23 2426 80 0 0 chr3 164716859 164717160 -62807418 + AluY SINE Alu 1 301 -10 262 364 76 29 chr3 164717509 164717825 -62806753 + HERVL LTR ERVL 1885 2215 -3439 1356 95 40 5 chr3 164718091 164718291 -62806287 + MER4E LTR ERV1 1 207 -559 326 335 61 41 chr3 164718406 164718651 -62805927 - L1MEd LINE L1 -5847 272 23 21 89 0 0 chr3 164718748 164718804 -62805774 + AT_rich Low_complexity Low_complexity 1 56 0 524 229 25 8 chr3 164718988 164719106 -62805472 - 5S rRNA rRNA -1 120 1 2409 161 44 10 chr3 164719165 164719574 -62805004 + MSTC LTR MaLR 6 428 0 579 101 22 0 chr3 164720372 164720461 -62804117 + MER4E LTR ERV1 676 766 0 1143 238 21 81 chr3 164720484 164720867 -62803711 + MLT1A1 LTR MaLR 1 360 -5 22 80 0 0 chr3 164721618 164721668 -62802910 + AT_rich Low_complexity Low_complexity 1 50 0 235 293 14 14 chr3 164722209 164722304 -62802274 - L1M4 LINE L1 -594 5590 5493 1415 240 39 3 chr3 164722381 164722693 -62801885 + MLT1D LTR MaLR 2 324 -181 3420 146 60 0 chr3 164722977 164723546 -62801032 + LTR26 LTR ERV1 1 603 0 614 259 0 0 chr3 164723721 164723852 -62800726 + FLAM_C SINE Alu 2 132 -1 212 224 90 15 chr3 164724583 164724650 -62799928 + MIR SINE MIR 119 190 -72 270 202 21 64 chr3 164724660 164724754 -62799824 + MER113 DNA MER1_type? 3 92 -429 361 302 19 19 chr3 164724968 164725074 -62799504 + L2 LINE L2 3184 3289 -24 231 125 0 0 chr3 164725387 164725427 -62799151 + (TC)n Simple_repeat Simple_repeat 2 41 0 455 45 15 0 chr3 164725427 164725493 -62799085 + (CA)n Simple_repeat Simple_repeat 1 67 0 230 164 90 104 chr3 164725868 164725935 -62798643 + L2 LINE L2 3248 3313 0 15301 164 24 49 chr3 164726507 164728505 -62796073 - L1MA3 LINE L1 0 7724 5679 220 26 26 26 chr3 164728505 164728543 -62796035 + (TTTTA)n Simple_repeat Simple_repeat 3 40 0 15301 164 24 49 chr3 164728543 164729160 -62795418 - L1MA3 LINE L1 -2045 5679 5049 2309 99 0 0 chr3 164729160 164729454 -62795124 - AluY SINE Alu -17 294 1 15301 164 24 49 chr3 164729454 164731358 -62793220 - L1MA3 LINE L1 -2675 5049 3100 2056 152 0 0 chr3 164731358 164731655 -62792923 - AluSg SINE Alu -13 297 1 15301 164 24 49 chr3 164731655 164734085 -62790493 - L1MA3 LINE L1 -4624 3100 950 492 242 42 63 chr3 164734224 164734414 -62790164 - MIR SINE MIR -3 259 74 24 67 0 0 chr3 164734968 164735013 -62789565 + AT_rich Low_complexity Low_complexity 1 45 0 804 304 21 12 chr3 164735390 164735633 -62788945 - MIR SINE MIR -10 252 8 4458 172 83 79 chr3 164737704 164738530 -62786048 - MER4B-int LTR ERV1 -475 6283 5449 1873 74 0 8 chr3 164738530 164738787 -62785791 - L1PA5 LINE L1 -4 6150 5896 4458 172 83 79 chr3 164738787 164739159 -62785419 - MER4B-int LTR ERV1 -1309 5449 5080 1037 93 0 7 chr3 164739275 164739414 -62785164 - MER72 LTR ERV1 0 722 585 222 227 0 0 chr3 164739672 164739716 -62784862 + (TATATG)n Simple_repeat Simple_repeat 4 47 0 301 287 11 11 chr3 164739717 164739811 -62784767 - L1MC4 LINE L1 -1340 6702 6609 430 210 0 0 chr3 164739825 164739906 -62784672 - FLAM_A SINE Alu -17 125 45 321 104 0 0 chr3 164740060 164740108 -62784470 - MLT2A1 LTR ERVL 0 444 397 273 155 0 0 chr3 164740113 164740171 -62784407 + (TA)n Simple_repeat Simple_repeat 1 58 0 3027 85 12 0 chr3 164740176 164740575 -62784003 - MLT2A1 LTR ERVL -40 404 1 43742 76 10 3 chr3 164740575 164746189 -62778389 - HERVL-A1 LTR ERVL 0 5654 1 352 39 78 0 chr3 164746189 164746240 -62778338 - MLT2A1 LTR ERVL 0 444 390 2971 79 22 10 chr3 164746271 164746675 -62777903 - MLT2A1 LTR ERVL -34 410 2 4519 119 9 13 chr3 164748305 164748978 -62775600 - Charlie3 DNA MER1_type -4 2706 2037 3026 101 7 15 chr3 164748984 164749440 -62775138 - THE1A-int LTR MaLR -1127 453 2 2380 97 20 8 chr3 164749441 164749792 -62774786 - THE1A LTR MaLR 0 355 1 13896 104 14 38 chr3 164749792 164750954 -62773624 - Charlie3 DNA MER1_type -665 2041 946 2155 106 3 0 chr3 164750954 164751271 -62773307 - AluSc SINE Alu 0 318 1 13896 104 14 38 chr3 164751271 164752196 -62772382 - Charlie3 DNA MER1_type -1760 946 1 251 156 0 22 chr3 164753364 164753409 -62771169 + L2 LINE L2 3227 3270 -2 1000 243 229 33 chr3 164753865 164754380 -62770198 + L1MC4 LINE L1 6460 7075 -967 1277 251 189 11 chr3 164754395 164754945 -62769633 + L1MC4 LINE L1 7255 7902 -140 261 0 0 0 chr3 164755434 164755463 -62769115 + (TA)n Simple_repeat Simple_repeat 2 30 0 225 241 38 25 chr3 164755511 164755590 -62768988 + CT-rich Low_complexity Low_complexity 4 83 0 1724 162 33 0 chr3 164756773 164757045 -62767533 - AluSq SINE Alu -27 286 6 26 0 0 0 chr3 164758232 164758258 -62766320 + AT_rich Low_complexity Low_complexity 1 26 0 2258 134 19 22 chr3 164759694 164760059 -62764519 + THE1B LTR MaLR 1 364 0 567 171 301 7 chr3 164760137 164760283 -62764295 - MER5A DNA MER1_type 0 189 1 200 211 56 0 chr3 164760520 164760591 -62763987 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 355 305 70 32 chr3 164761710 164761897 -62762681 - L1MC4a LINE L1 -181 5940 5745 234 211 35 0 chr3 164762210 164762267 -62762311 + (TATATG)n Simple_repeat Simple_repeat 4 62 0 303 287 11 11 chr3 164762268 164762362 -62762216 - L1MC4 LINE L1 -1340 6702 6609 425 210 0 0 chr3 164762376 164762457 -62762121 - FLAM_A SINE Alu -17 125 45 322 104 0 0 chr3 164762611 164762659 -62761919 - MLT2A1 LTR ERVL 0 444 397 273 155 0 0 chr3 164762664 164762722 -62761856 + (TA)n Simple_repeat Simple_repeat 1 58 0 2836 80 39 0 chr3 164762727 164763115 -62761463 - MLT2A1 LTR ERVL -40 404 2 4118 121 13 24 chr3 164764741 164765413 -62759165 - Charlie3 DNA MER1_type -4 2706 2042 22 0 0 0 chr3 164768403 164768425 -62756153 + AT_rich Low_complexity Low_complexity 1 22 0 783 309 54 29 chr3 164768626 164769034 -62755544 - LTR16A LTR ERVL -13 437 20 1003 353 46 30 chr3 164769649 164770459 -62754119 - HERV16 LTR ERVL -1100 4554 3732 1658 344 44 13 chr3 164770508 164771680 -62752898 - HERV16 LTR ERVL -1907 3089 2001 385 298 81 30 chr3 164771743 164771941 -62752637 + L2 LINE L2 3106 3313 0 239 324 102 0 chr3 164772219 164772327 -62752251 - MIR3 SINE MIR 0 208 90 481 343 40 29 chr3 164772711 164772985 -62751593 + MLT1K LTR MaLR 143 419 -169 565 85 11 21 chr3 164773051 164773145 -62751433 + (TTCC)n Simple_repeat Simple_repeat 4 96 0 600 173 29 0 chr3 164773248 164773387 -62751191 + CT-rich Low_complexity Low_complexity 1 143 0 1043 217 5 0 chr3 164773392 164773613 -62750965 - AluJb SINE Alu -4 308 87 324 219 85 0 chr3 164773628 164773710 -62750868 + MLT1K LTR MaLR 494 582 -6 454 87 29 0 chr3 164773781 164773850 -62750728 + AluSc SINE Alu 236 306 -3 5034 152 10 10 chr3 164777910 164777921 -62746657 - L1MA2 LINE L1 -240 6064 6054 429 108 0 0 chr3 164777921 164777986 -62746592 - L1MA3 LINE L1 -5 6300 6236 5034 152 10 10 chr3 164777986 164779577 -62745001 - L1MA2 LINE L1 -250 6054 4457 231 242 0 0 chr3 164779673 164779735 -62744843 - HAL1 LINE L1 -1485 1022 961 24 32 0 0 chr3 164783274 164783305 -62741273 + AT_rich Low_complexity Low_complexity 1 31 0 5887 90 6 0 chr3 164784364 164785229 -62739349 - L1P LINE L1 -2442 3704 2835 273 182 0 0 chr3 164787961 164788016 -62736562 + A-rich Low_complexity Low_complexity 1 55 0 516 294 87 27 chr3 164789516 164789700 -62734878 + MIR SINE MIR 42 236 -26 529 303 20 5 chr3 164789984 164790179 -62734399 + L1ME LINE L1 5547 5744 -377 25 31 0 0 chr3 164791237 164791269 -62733309 + AT_rich Low_complexity Low_complexity 1 32 0 242 292 77 85 chr3 164791382 164791429 -62733149 - MIR SINE MIR -29 233 187 897 207 11 5 chr3 164791429 164791617 -62732961 + MER5A DNA MER1_type 1 189 0 242 292 77 85 chr3 164791617 164791699 -62732879 - MIR SINE MIR -75 187 105 2183 121 0 0 chr3 164792139 164792444 -62732134 - AluSg SINE Alu -5 305 1 229 278 53 60 chr3 164792645 164792778 -62731800 + MLT1L LTR MaLR 18 149 -466 276 309 31 10 chr3 164792796 164792893 -62731685 + MER5B DNA MER1_type 28 126 -52 575 294 161 29 chr3 164792903 164793318 -62731260 + MLT1L LTR MaLR 143 612 -3 1660 138 3 112 chr3 164793416 164793756 -62730822 + AluSq SINE Alu 1 303 0 256 344 82 16 chr3 164795136 164795258 -62729320 - L2 LINE L2 -5 3267 3138 437 303 88 17 chr3 164796648 164796886 -62727692 + MIR SINE MIR 2 256 -6 22 70 0 0 chr3 164797581 164797624 -62726954 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chr3 164798674 164798705 -62725873 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 164800084 164800105 -62724473 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 164800395 164800421 -62724157 + AT_rich Low_complexity Low_complexity 1 26 0 27 49 0 0 chr3 164800970 164801011 -62723567 + AT_rich Low_complexity Low_complexity 1 41 0 249 323 52 13 chr3 164801756 164801911 -62722667 + L1MEd LINE L1 981 1141 -4978 1514 134 30 27 chr3 164802250 164802548 -62722030 + Tigger2 DNA MER2_type 13 311 -2407 2074 152 0 57 chr3 164803053 164803341 -62721237 - HSMAR2 DNA Mariner -922 380 120 1684 192 0 10 chr3 164803341 164803653 -62720925 + AluJb SINE Alu 1 309 -3 2074 152 0 57 chr3 164803653 164803765 -62720813 - HSMAR2 DNA Mariner -1182 120 3 306 106 0 0 chr3 164803765 164803812 -62720766 + (TG)n Simple_repeat Simple_repeat 2 48 0 9484 202 58 59 chr3 164803814 164808359 -62716219 - L1M2 LINE L1 -552 7158 2505 500 277 8 0 chr3 164808359 164808478 -62716100 - FLAM_A SINE Alu -12 130 11 9484 202 58 59 chr3 164808478 164809087 -62715491 - L1M2 LINE L1 -5205 2505 1897 2172 125 47 36 chr3 164809250 164809610 -62714968 - THE1B LTR MaLR 0 364 1 11300 107 2 1 chr3 164809610 164811189 -62713389 - THE1B-int LTR MaLR 0 1580 1 1939 139 9 35 chr3 164811189 164811506 -62713072 - THE1B LTR MaLR 0 364 56 894 299 44 42 chr3 164812206 164812657 -62711921 - L1M2 LINE L1 -5503 1983 1532 * 2661 169 54 28 chr3 164812654 164813269 -62711309 - L1 LINE L1 -1433 4713 4083 375 299 58 19 chr3 164813565 164813719 -62710859 + MIR3 SINE MIR 44 203 -5 1368 196 68 45 chr3 164813800 164814137 -62710441 + MER2 DNA MER2_type 1 345 0 185 233 178 27 chr3 164814576 164814649 -62709929 + L3b LINE CR1 1382 1465 -118 239 311 158 59 chr3 164814802 164815194 -62709384 - L2 LINE L2 -610 2704 2274 226 222 0 0 chr3 164816028 164816073 -62708505 + MER4A LTR ERV1 54 98 -566 938 220 117 5 chr3 164816678 164816892 -62707686 + MER8 DNA MER2_type 1 238 -1 2726 162 21 21 chr3 164817170 164817681 -62706897 + Tigger2 DNA MER2_type 234 744 -1974 1227 131 25 124 chr3 164817751 164818033 -62706545 + Tigger2 DNA MER2_type 2465 2718 0 403 337 79 16 chr3 164818333 164818523 -62706055 + MLT1J2 LTR MaLR 216 417 -33 229 258 21 21 chr3 164819709 164819802 -62704776 + L1P LINE L1 3376 3468 -2678 1708 133 76 13 chr3 164819976 164820293 -62704285 + MER1B DNA MER1_type 1 337 0 278 285 61 75 chr3 164820320 164820534 -62704044 + L1ME1 LINE L1 3622 3832 -2314 364 302 117 50 chr3 164820718 164821138 -62703440 + L1ME1 LINE L1 4068 4515 -1631 527 281 59 50 chr3 164821180 164821694 -62702884 + L1MCc LINE L1 33 597 -5826 974 220 5 5 chr3 164821924 164822124 -62702454 + MLT1B LTR MaLR 191 390 0 3343 224 53 20 chr3 164822129 164823277 -62701301 + L1ME1 LINE L1 4986 6160 -6 376 307 67 33 chr3 164823297 164823626 -62700952 + L1ME LINE L1 5038 5377 -769 271 246 109 32 chr3 164823635 164823793 -62700785 + L1ME LINE L1 5410 5596 -525 5275 116 22 7 chr3 164823886 164824721 -62699857 - L1MA2 LINE L1 0 6304 5458 21 0 0 0 chr3 164824757 164824778 -62699800 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 164824910 164824936 -62699642 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 164825216 164825237 -62699341 + AT_rich Low_complexity Low_complexity 1 21 0 749 323 45 35 chr3 164826091 164826493 -62698085 + MLT1I LTR MaLR 2 407 -2 291 262 221 28 chr3 164826884 164827029 -62697549 - MIR SINE MIR 0 262 90 * 1120 277 102 17 chr3 164827025 164827447 -62697131 - L2 LINE L2 -1207 2107 1650 2650 196 6 4 chr3 164827447 164827988 -62696590 - L1P LINE L1 -1671 4475 3934 618 299 55 14 chr3 164827988 164828205 -62696373 - L2 LINE L2 -2910 404 179 361 324 64 48 chr3 164828470 164828844 -62695734 + L1ME LINE L1 5420 5799 -322 393 115 0 0 chr3 164829759 164829811 -62694767 - L1PA11 LINE L1 -61 6113 6062 8008 120 10 11 chr3 164830206 164832067 -62692511 - L1PA11 LINE L1 -298 5876 4020 328 354 55 12 chr3 164832705 164832869 -62691709 - L1M4 LINE L1 -2018 4128 3958 274 316 38 13 chr3 164833234 164833392 -62691186 - L1MEc LINE L1 -6200 196 35 21 57 0 0 chr3 164833785 164833820 -62690758 + AT_rich Low_complexity Low_complexity 1 35 0 24 53 0 0 chr3 164834370 164834408 -62690170 + AT_rich Low_complexity Low_complexity 1 38 0 200 211 56 0 chr3 164835331 164835402 -62689176 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 395 344 101 16 chr3 164836539 164836755 -62687823 - L1MC4a LINE L1 -1896 5912 5716 279 93 0 0 chr3 164836755 164836798 -62687780 + (TG)n Simple_repeat Simple_repeat 2 44 0 395 344 101 16 chr3 164836798 164836956 -62687622 - L1MC4a LINE L1 -2092 5716 5506 201 208 0 62 chr3 164837436 164837484 -62687094 - L2 LINE L2 -356 2958 2914 198 103 0 0 chr3 164837921 164837950 -62686628 + (TC)n Simple_repeat Simple_repeat 2 30 0 189 0 0 0 chr3 164837949 164837970 -62686608 + (T)n Simple_repeat Simple_repeat 1 21 0 * 5909 165 15 12 chr3 164838188 164839670 -62684908 + L1MA4 LINE L1 4812 6299 -1 27 0 0 0 chr3 164840630 164840657 -62683921 + AT_rich Low_complexity Low_complexity 1 27 0 3981 69 4 0 chr3 164841475 164842029 -62682549 - L1PA4 LINE L1 -428 5726 5165 3412 31 2 14 chr3 164842029 164842452 -62682126 + L1PA4 LINE L1 5737 6155 0 3981 69 4 0 chr3 164842452 164842478 -62682100 - L1P2 LINE L1 -989 5165 5141 357 269 64 91 chr3 164842789 164843058 -62681520 + L1ME LINE L1 5532 5793 -328 423 0 0 0 chr3 164843239 164843286 -62681292 + (TA)n Simple_repeat Simple_repeat 2 48 0 1275 179 139 44 chr3 164843317 164843649 -62680929 + MLT1A2 LTR MaLR 1 374 0 302 153 17 0 chr3 164843790 164843849 -62680729 + GA-rich Low_complexity Low_complexity 1 60 0 429 249 73 17 chr3 164845307 164845484 -62679094 - L1MC5 LINE L1 -48 7913 7727 1382 303 66 50 chr3 164847401 164848098 -62676480 - L3 LINE CR1 -219 1358 651 294 236 113 19 chr3 164848814 164848920 -62675658 - MLT1H LTR MaLR -304 245 130 1659 145 6 75 chr3 164849145 164849330 -62675248 - AluSx SINE Alu -16 296 139 1158 112 0 0 chr3 164849330 164849535 -62675043 + (TA)n Simple_repeat Simple_repeat 1 205 0 1659 145 6 75 chr3 164849535 164849666 -62674912 - AluSx SINE Alu -173 139 1 342 45 0 0 chr3 164850258 164850302 -62674276 + (CA)n Simple_repeat Simple_repeat 2 45 0 3557 151 53 6 chr3 164850326 164850950 -62673628 + MER39B LTR ERV1 1 653 0 212 338 0 28 chr3 164851427 164851498 -62673080 - MIR SINE MIR -59 149 81 294 301 45 8 chr3 164851541 164851674 -62672904 + MIR SINE MIR 105 242 -20 365 247 175 36 chr3 164851876 164852236 -62672342 + L1ME4a LINE L1 5711 6120 -1 22 0 0 0 chr3 164855111 164855133 -62669445 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 164856104 164856132 -62668446 + AT_rich Low_complexity Low_complexity 1 28 0 645 190 0 8 chr3 164856401 164856522 -62668056 + AluJo SINE Alu 15 134 -178 1762 174 17 66 chr3 164856878 164857287 -62667291 + MLT1B LTR MaLR 2 390 0 211 308 90 0 chr3 164857574 164857652 -62666926 + MIR SINE MIR 119 203 -59 200 288 0 38 chr3 164859001 164859081 -62665497 + A-rich Low_complexity Low_complexity 2 78 0 301 192 26 0 chr3 164859827 164859905 -62664673 - MER116 DNA Mariner 0 80 1 602 249 33 39 chr3 164860797 164860978 -62663600 - MER5A DNA MER1_type -2 187 8 731 134 35 6 chr3 164861060 164861231 -62663347 + CT-rich Low_complexity Low_complexity 3 178 0 360 0 0 0 chr3 164861232 164861272 -62663306 + (TCTCC)n Simple_repeat Simple_repeat 5 44 0 1730 164 4 14 chr3 164861285 164861560 -62663018 - AluJb SINE Alu -40 272 1 455 291 97 40 chr3 164862186 164862413 -62662165 - MIR SINE MIR -12 250 11 476 261 99 12 chr3 164862538 164862699 -62661879 - MIR SINE MIR 0 262 88 1268 175 9 112 chr3 164862742 164863073 -62661505 - MLT1A1 LTR MaLR 0 365 69 262 0 53 0 chr3 164863620 164863658 -62660920 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 542 294 216 0 chr3 164863899 164864103 -62660475 + MIR SINE MIR 10 257 -5 355 387 59 8 chr3 164864229 164864482 -62660096 - L3 LINE CR1 -112 1465 1200 359 339 94 64 chr3 164865138 164865519 -62659059 + L2 LINE L2 2686 3083 -189 212 274 32 16 chr3 164865752 164865814 -62658764 - MIR SINE MIR -10 252 190 258 230 21 0 chr3 164865885 164865965 -62658613 - MLT1H LTR MaLR 0 590 512 1092 282 32 9 chr3 164866049 164866393 -62658185 - MLT1H LTR MaLR -197 352 1 324 188 24 0 chr3 164866798 164866871 -62657707 + HsTC2 DNA Tc2 1817 1898 0 191 325 0 77 chr3 164866873 164866990 -62657588 - MIR SINE MIR -114 148 41 26 0 0 0 chr3 164867076 164867102 -62657476 + AT_rich Low_complexity Low_complexity 1 26 0 2169 45 0 0 chr3 164867102 164867368 -62657210 - L1PA2 LINE L1 -2 6153 5888 21 0 0 0 chr3 164867423 164867444 -62657134 + AT_rich Low_complexity Low_complexity 1 21 0 633 302 34 36 chr3 164869290 164869586 -62654992 + MLT1G1 LTR MaLR 4 389 -206 258 32 0 0 chr3 164869636 164869667 -62654911 + (CA)n Simple_repeat Simple_repeat 1 31 0 23 0 0 0 chr3 164869964 164869987 -62654591 + AT_rich Low_complexity Low_complexity 1 23 0 1119 206 69 0 chr3 164870716 164870934 -62653644 + AluJo SINE Alu 1 233 -79 1581 244 44 76 chr3 164870934 164871552 -62653026 + LTR9 LTR ERV1 1 598 -14 378 137 110 0 chr3 164871554 164871627 -62652951 + AluJo SINE Alu 216 296 -6 22 35 0 0 chr3 164872906 164872935 -62651643 + AT_rich Low_complexity Low_complexity 1 29 0 14945 153 22 24 chr3 164872979 164876333 -62648245 + L1MA2 LINE L1 15 3373 -4350 2212 82 9 67 chr3 164876333 164876663 -62647915 + AluY SINE Alu 1 311 0 14945 153 22 24 chr3 164876663 164880379 -62644199 + L1MA2 LINE L1 3373 7288 -435 2244 119 0 0 chr3 164880379 164880691 -62643887 + AluSx SINE Alu 1 312 0 14945 153 22 24 chr3 164880691 164880824 -62643754 + L1MA2 LINE L1 7288 7420 -303 310 236 56 11 chr3 164881008 164881097 -62643481 - MER103 DNA DNA -17 149 57 509 141 33 58 chr3 164881785 164881906 -62642672 - Charlie1 DNA MER1_type -6 2755 2638 1357 250 180 4 chr3 164883037 164883493 -62641085 - MLT1H LTR MaLR -13 536 1 282 313 104 15 chr3 164884326 164884527 -62640051 + L3b LINE CR1 1176 1394 -189 28 29 0 0 chr3 164884593 164884628 -62639950 + AT_rich Low_complexity Low_complexity 1 35 0 361 339 42 14 chr3 164885627 164885813 -62638765 + MIR SINE MIR 10 192 -65 1860 156 0 10 chr3 164886699 164886987 -62637591 + AluJb SINE Alu 14 298 -14 184 264 85 57 chr3 164887122 164887228 -62637350 - L2 LINE L2 -923 2391 2283 229 153 17 17 chr3 164887679 164887738 -62636840 + CT-rich Low_complexity Low_complexity 3 61 0 21 0 0 0 chr3 164887923 164887944 -62636634 + AT_rich Low_complexity Low_complexity 1 21 0 2167 121 0 26 chr3 164887946 164888259 -62636319 - AluSq SINE Alu -8 305 1 1953 209 44 5 chr3 164889940 164890347 -62634231 - MSTB LTR MaLR -1 425 3 856 257 132 8 chr3 164893453 164893846 -62630732 - LTR37B LTR ERV1 0 468 27 2144 100 0 10 chr3 164893850 164894141 -62630437 - AluSq SINE Alu -25 288 1 267 280 110 10 chr3 164895414 164895514 -62629064 + L2 LINE L2 3111 3220 -52 784 87 17 0 chr3 164898226 164898341 -62626237 + AluSg/x SINE Alu 189 305 -7 363 136 0 0 chr3 164898678 164898737 -62625841 + (TA)n Simple_repeat Simple_repeat 2 60 0 261 139 0 0 chr3 164898900 164898943 -62625635 + (CA)n Simple_repeat Simple_repeat 2 44 0 195 42 0 0 chr3 164900731 164900755 -62623823 + (TGAA)n Simple_repeat Simple_repeat 4 27 0 263 293 98 16 chr3 164901217 164901340 -62623238 - MIR SINE MIR -110 152 20 194 113 42 28 chr3 164901836 164901907 -62622671 + (TATAA)n Simple_repeat Simple_repeat 3 74 0 352 155 271 16 chr3 164902055 164902184 -62622394 + MER103 DNA DNA 2 163 -3 26 64 0 0 chr3 164904888 164904935 -62619643 + AT_rich Low_complexity Low_complexity 1 47 0 1845 230 144 33 chr3 164905213 164905909 -62618669 - L1ME2 LINE L1 -32 6201 5429 25 31 0 0 chr3 164905942 164905974 -62618604 + AT_rich Low_complexity Low_complexity 1 32 0 348 127 0 0 chr3 164906190 164906245 -62618333 + (TG)n Simple_repeat Simple_repeat 2 56 0 1517 146 92 8 chr3 164906270 164906530 -62618048 - AluJo SINE Alu -30 282 1 2038 260 113 28 chr3 164906532 164908437 -62616141 - L1ME2 LINE L1 -779 5436 3695 2110 264 28 15 chr3 164908437 164909055 -62615523 - MLT1E2 LTR MaLR 0 626 1 2038 260 113 28 chr3 164909055 164910456 -62614122 - L1ME2 LINE L1 -2520 3695 1718 258 288 127 58 chr3 164910528 164910733 -62613845 - L2 LINE L2 -536 2778 2560 286 300 126 0 chr3 164911394 164911518 -62613060 + MER20 DNA MER1_type 72 212 -7 585 221 20 98 chr3 164912698 164912902 -62611676 + MER5A DNA MER1_type 1 188 -1 490 327 128 43 chr3 164913209 164913695 -62610883 - L2 LINE L2 -938 2376 1850 2214 93 3 37 chr3 164913871 164914193 -62610385 - AluSq SINE Alu -2 311 1 383 337 66 76 chr3 164915768 164916652 -62607926 - L2 LINE L2 -1 3312 2420 2063 141 5 46 chr3 164916774 164917144 -62607434 - THE1A LTR MaLR 0 355 1 11353 106 10 1 chr3 164917144 164918711 -62605867 - THE1B-int LTR MaLR 0 1580 1 2086 122 21 53 chr3 164918711 164919087 -62605491 - THE1B LTR MaLR 0 364 1 554 366 5 13 chr3 164919197 164919421 -62605157 + L1PA16 LINE L1 5 226 -6561 5457 249 15 6 chr3 164919925 164922298 -62602280 + L1PA16 LINE L1 1369 3784 -3013 5143 166 11 16 chr3 164922291 164923304 -62601274 - L1P LINE L1 -2433 3713 2706 * 4719 179 14 10 chr3 164923304 164924614 -62599964 + L1PA16 LINE L1 5499 6813 -4 28 29 0 0 chr3 164924861 164924896 -62599682 + AT_rich Low_complexity Low_complexity 1 35 0 579 328 12 47 chr3 164925410 164925663 -62598915 - MIR SINE MIR -10 252 9 21 0 0 0 chr3 164925871 164925892 -62598686 + AT_rich Low_complexity Low_complexity 1 21 0 14995 155 16 41 chr3 164926622 164927336 -62597242 - Tigger4(Zombi) DNA MER2_type -17 2714 1984 2341 61 0 10 chr3 164927336 164927633 -62596945 + AluY SINE Alu 1 294 -17 14995 155 16 41 chr3 164927633 164929544 -62595034 - Tigger4(Zombi) DNA MER2_type -747 1984 157 3674 62 2 0 chr3 164929544 164929996 -62594582 - MLT2A2 LTR ERVL 0 453 1 14995 155 16 41 chr3 164929996 164930149 -62594429 - Tigger4(Zombi) DNA MER2_type -2574 157 2 548 321 47 5 chr3 164930185 164930378 -62594200 - MIR SINE MIR -34 228 28 202 204 0 0 chr3 164930502 164930546 -62594032 + T-rich Low_complexity Low_complexity 2 45 0 46 54 0 0 chr3 164930850 164930924 -62593654 + AT_rich Low_complexity Low_complexity 1 74 0 259 318 39 31 chr3 164931122 164931251 -62593327 + MLT1K LTR MaLR 15 144 -444 694 303 100 23 chr3 164931285 164931635 -62592943 + MLT1K LTR MaLR 209 585 -3 1368 228 41 27 chr3 164932583 164932640 -62591938 + MLT1A2 LTR MaLR 1 56 -318 1938 156 0 28 chr3 164932640 164932961 -62591617 + AluSx SINE Alu 1 312 0 1368 228 41 27 chr3 164932961 164933272 -62591306 + MLT1A2 LTR MaLR 56 374 0 28 0 0 0 chr3 164934360 164934388 -62590190 + AT_rich Low_complexity Low_complexity 1 28 0 197 296 0 42 chr3 164934463 164934534 -62590044 - L2 LINE L2 -4 3268 3201 451 324 28 0 chr3 164935000 164935179 -62589399 - MIR SINE MIR -3 259 76 272 309 46 26 chr3 164935705 164935857 -62588721 + Charlie8 DNA MER1_type 74 228 -2189 1860 243 55 60 chr3 164935890 164936285 -62588293 - MLT1E2 LTR MaLR 0 626 232 2115 117 0 0 chr3 164936285 164936606 -62587972 - AluSx SINE Alu 0 321 1 1860 243 55 60 chr3 164936606 164936777 -62587801 - MLT1E2 LTR MaLR -394 232 62 22 0 0 0 chr3 164937327 164937349 -62587229 + AT_rich Low_complexity Low_complexity 1 22 0 254 203 13 101 chr3 164938193 164938272 -62586306 + MLT1I LTR MaLR 3 74 -335 414 222 160 42 chr3 164938334 164938478 -62586100 + MLT1I LTR MaLR 243 403 -6 1713 197 3 3 chr3 164938605 164938899 -62585679 - AluJb SINE Alu -16 296 3 1435 126 0 0 chr3 164940002 164940193 -62584385 + AluSc SINE Alu 7 197 -112 591 201 0 0 chr3 164940195 164940349 -62584229 + (TA)n Simple_repeat Simple_repeat 2 155 0 298 177 101 0 chr3 164940352 164940431 -62584147 - L1MC4 LINE L1 -1340 6702 6616 301 192 26 0 chr3 164942390 164942468 -62582110 + MER116 DNA Mariner 1 80 0 200 288 0 38 chr3 164943214 164943294 -62581284 + T-rich Low_complexity Low_complexity 2 78 0 211 308 90 0 chr3 164944643 164944721 -62579857 - MIR SINE MIR -59 203 119 1780 171 17 66 chr3 164945008 164945417 -62579161 - MLT1B LTR MaLR 0 390 2 645 190 0 8 chr3 164945773 164945894 -62578684 - AluJo SINE Alu -178 134 15 21 36 0 0 chr3 164946163 164946191 -62578387 + AT_rich Low_complexity Low_complexity 1 28 0 13953 173 27 23 chr3 164947042 164947596 -62576982 - L1MA2 LINE L1 0 7723 7173 2339 80 3 10 chr3 164947596 164947896 -62576682 - AluY SINE Alu -13 298 1 13953 173 27 23 chr3 164947896 164950692 -62573886 - L1MA2 LINE L1 -550 7173 4357 2082 137 0 3 chr3 164950692 164950999 -62573579 - AluSx SINE Alu -6 306 1 13953 173 27 23 chr3 164950999 164951848 -62572730 - L1MA2 LINE L1 -3366 4357 3513 603 235 16 70 chr3 164951875 164952062 -62572516 - MLT1D LTR MaLR -328 177 1 314 373 0 0 chr3 164952588 164952690 -62571888 + L2 LINE L2 3203 3304 -9 * 401 346 104 33 chr3 164952687 164953232 -62571346 - L2 LINE L2 -225 3047 2470 2083 125 0 3 chr3 164954820 164955131 -62569447 - AluSx SINE Alu -2 310 1 255 161 0 18 chr3 164956434 164956490 -62568088 - L1MC4 LINE L1 -1339 6703 6649 603 242 93 0 chr3 164958011 164958172 -62566406 - L3b LINE CR1 -226 1357 1182 5796 200 56 23 chr3 164959064 164961234 -62563344 - L1MA5A LINE L1 -4 6935 4691 697 203 0 0 chr3 164961232 164961365 -62563213 - L1MA5A LINE L1 -3393 3395 3263 * 10165 197 36 20 chr3 164961357 164961963 -62562615 - L1MA5A LINE L1 -4708 2081 1486 243 61 0 0 chr3 164961963 164961996 -62562582 + (TG)n Simple_repeat Simple_repeat 2 34 0 10165 197 36 20 chr3 164961996 164963434 -62561144 - L1MA5A LINE L1 -5303 1486 4 783 221 12 12 chr3 164963460 164963623 -62560955 - FRAM SINE Alu -3 163 1 28 29 0 0 chr3 164963861 164963896 -62560682 + AT_rich Low_complexity Low_complexity 1 35 0 285 295 56 59 chr3 164964440 164964728 -62559850 - L1ME4a LINE L1 -1 6120 5834 2623 172 89 61 chr3 164964764 164965402 -62559176 - L1MB2 LINE L1 -5 6166 5511 21 57 0 0 chr3 164966512 164966547 -62558031 + AT_rich Low_complexity Low_complexity 1 35 0 634 104 0 0 chr3 164967563 164967659 -62556919 + L1PB1 LINE L1 6055 6150 -1 334 194 15 0 chr3 164967767 164967834 -62556744 + L1MD3 LINE L1 7716 7783 -212 2035 87 3 93 chr3 164967873 164968217 -62556361 + L1PA8A LINE L1 5815 6127 -4 403 101 0 0 chr3 164968293 164968362 -62556216 + L1MC3 LINE L1 7554 7622 -163 226 330 45 0 chr3 164968988 164969076 -62555502 - MER5C DNA MER1_type -230 94 3 2026 215 99 0 chr3 164969501 164969957 -62554621 - MLT1D LTR MaLR 0 505 5 843 209 30 20 chr3 164970858 164971059 -62553519 + MER3 DNA MER1_type 2 204 -5 711 217 162 0 chr3 164971310 164971545 -62553033 + ORSL DNA AcHobo 2 274 -1 588 299 108 21 chr3 164971999 164972240 -62552338 + MIR SINE MIR 1 262 0 257 266 31 78 chr3 164972407 164972535 -62552043 + MIR SINE MIR 135 256 -6 1596 135 4 0 chr3 164972599 164972828 -62551750 + AluSq SINE Alu 35 264 -49 377 287 0 0 chr3 164975861 164975948 -62548630 + L2 LINE L2 3223 3309 -4 315 305 193 8 chr3 164977565 164977824 -62546754 + L3 LINE CR1 878 1184 -393 2232 103 10 0 chr3 164978005 164978307 -62546271 + AluSq SINE Alu 2 306 -7 415 278 146 7 chr3 164980457 164980608 -62543970 + MIR SINE MIR 3 174 -88 371 262 70 0 chr3 164980710 164980846 -62543732 + MIR SINE MIR 103 250 -12 341 93 19 0 chr3 164980847 164980901 -62543677 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1394 293 61 33 chr3 164981918 164982494 -62542084 + L2 LINE L2 2302 2893 -421 254 284 0 21 chr3 164983161 164983256 -62541322 - L1ME4a LINE L1 -54 6067 5975 4707 99 7 12 chr3 164984191 164984875 -62539703 + L1PA10 LINE L1 5477 6157 -11 314 303 143 28 chr3 164985066 164985515 -62539063 + L1MEc LINE L1 2103 2560 -3655 1719 194 52 3 chr3 164985913 164986242 -62538336 - MER2 DNA MER2_type 0 345 1 12347 125 124 12 chr3 164986242 164988599 -62535979 - L1PBa LINE L1 -3595 3267 644 1022 177 5 0 chr3 164988601 164988793 -62535785 - L1PBa LINE L1 -6668 195 3 2944 217 15 13 chr3 164988806 164989478 -62535100 + L1MEc LINE L1 3538 4210 -2005 1973 170 41 11 chr3 164989478 164989842 -62534736 + THE1C LTR MaLR 1 375 0 1230 180 32 51 chr3 164989843 164990154 -62534424 + L1MEc LINE L1 4207 4511 -1704 375 372 77 17 chr3 164990224 164990458 -62534120 - L1MC/D LINE L1 -2053 5755 5508 241 320 15 20 chr3 164990465 164990662 -62533916 - L1MC/D LINE L1 -2332 5476 5281 1387 179 127 94 chr3 164991316 164991796 -62532782 + L1MC3 LINE L1 7258 7753 -32 2353 93 0 3 chr3 164992913 164993224 -62531354 - AluSx SINE Alu -2 310 1 399 254 9 18 chr3 164994155 164994269 -62530309 - MER69 DNA AcHobo -1 2525 2413 266 163 0 0 chr3 164994426 164994469 -62530109 - MER69 DNA AcHobo -2478 48 6 1462 199 3 36 chr3 164995976 164996282 -62528296 + AluJb SINE Alu 3 298 -14 219 333 84 47 chr3 164996282 164996495 -62528083 - L2 LINE L2 -228 3044 2824 392 299 34 77 chr3 164997393 164997717 -62526861 - L2 LINE L2 -733 2581 2272 3047 181 20 19 chr3 164998345 164998460 -62526118 - L1MA8 LINE L1 -10 6281 6168 1910 214 3 3 chr3 164998460 164998824 -62525754 - MLT1A1 LTR MaLR -1 364 1 3047 181 20 19 chr3 164998824 164999343 -62525235 - L1MA8 LINE L1 -123 6168 5646 2480 103 6 0 chr3 164999553 164999904 -62524674 + THE1A LTR MaLR 3 355 0 2382 54 0 3 chr3 164999975 165000270 -62524308 + AluY SINE Alu 1 294 -17 190 333 129 48 chr3 165000276 165000585 -62523993 - L2 LINE L2 -1240 2074 1741 510 61 0 0 chr3 165000852 165000918 -62523660 + (TG)n Simple_repeat Simple_repeat 2 67 0 208 270 32 0 chr3 165000934 165000995 -62523583 - MIR SINE MIR -9 253 191 349 252 226 38 chr3 165000995 165001154 -62523424 + MER5A DNA MER1_type 1 189 0 285 330 10 0 chr3 165001167 165001264 -62523314 - MIR SINE MIR -86 176 79 261 356 104 59 chr3 165001320 165001694 -62522884 - L2 LINE L2 -1855 1459 1069 227 70 0 47 chr3 165001695 165001738 -62522840 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 197 310 0 0 chr3 165001747 165001805 -62522773 - L2 LINE L2 -2263 1051 994 * 603 312 68 11 chr3 165001802 165002068 -62522510 + L2 LINE L2 2167 2447 -867 603 317 60 39 chr3 165002541 165002875 -62521703 - L2 LINE L2 -52 3261 2921 202 176 20 20 chr3 165003682 165003733 -62520845 + T-rich Low_complexity Low_complexity 3 53 0 279 79 0 0 chr3 165004322 165004360 -62520218 + (T)n Simple_repeat Simple_repeat 1 38 0 280 225 25 25 chr3 165004575 165004655 -62519923 - MIR SINE MIR -92 170 91 2299 74 0 0 chr3 165004761 165005057 -62519521 - AluY SINE Alu -15 296 1 216 0 0 0 chr3 165005057 165005081 -62519497 + (T)n Simple_repeat Simple_repeat 1 24 0 21 0 0 0 chr3 165005293 165005314 -62519264 + AT_rich Low_complexity Low_complexity 1 21 0 2010 117 38 0 chr3 165005394 165005685 -62518893 + AluSg SINE Alu 3 304 -6 234 319 56 63 chr3 165005921 165006206 -62518372 + MLT1K LTR MaLR 190 472 -116 1013 317 117 22 chr3 165006304 165006802 -62517776 - LTR67 LTR ERVL -11 546 2 1926 212 21 36 chr3 165006848 165006935 -62517643 + MLT1C LTR MaLR 3 90 -377 2072 124 45 28 chr3 165006935 165007291 -62517287 + THE1B LTR MaLR 1 362 -2 1926 212 21 36 chr3 165007291 165007675 -62516903 + MLT1C LTR MaLR 90 467 0 221 255 0 0 chr3 165007677 165007724 -62516854 - L2 LINE L2 -228 3044 2998 954 248 145 16 chr3 165007728 165008031 -62516547 - LTR16A LTR ERVL -21 429 88 2226 128 0 0 chr3 165008884 165009196 -62515382 + AluSx SINE Alu 1 312 0 276 228 158 103 chr3 165010310 165010414 -62514164 + MIR SINE MIR 61 181 -81 2046 105 0 4 chr3 165010414 165010691 -62513887 - AluSx SINE Alu -36 276 1 276 228 158 103 chr3 165010691 165010770 -62513808 + MIR SINE MIR 181 254 -8 335 268 56 89 chr3 165010952 165011310 -62513268 + L1ME4a LINE L1 5672 6017 -104 340 288 91 45 chr3 165011788 165012031 -62512547 + L1ME4a LINE L1 5681 5934 -187 816 242 16 0 chr3 165012566 165012752 -62511826 - MER5A DNA MER1_type 0 189 1 266 233 67 0 chr3 165013145 165013235 -62511343 - L1M4 LINE L1 -2409 3737 3642 1869 266 56 23 chr3 165013990 165014651 -62509927 - L1ME3A LINE L1 -208 5962 5280 180 217 0 0 chr3 165014660 165014706 -62509872 + (CATATA)n Simple_repeat Simple_repeat 1 46 0 2264 113 3 0 chr3 165015020 165015331 -62509247 + AluSp SINE Alu 1 312 -1 2327 94 3 7 chr3 165017207 165017516 -62507062 - AluSx SINE Alu -4 308 1 395 228 26 35 chr3 165018445 165018559 -62506019 - MER69 DNA AcHobo -1 2525 2413 267 163 0 0 chr3 165018716 165018759 -62505819 - MER69 DNA AcHobo -2478 48 6 846 209 17 11 chr3 165019048 165019225 -62505353 - AluJ SINE Alu -5 307 130 40 49 0 0 chr3 165019238 165019299 -62505279 + AT_rich Low_complexity Low_complexity 1 61 0 677 221 0 0 chr3 165019353 165019484 -62505094 - AluJ SINE Alu -176 136 6 1083 114 64 35 chr3 165019610 165019812 -62504766 + L1MA9 LINE L1 6104 6311 -1 21 0 0 0 chr3 165019831 165019852 -62504726 + AT_rich Low_complexity Low_complexity 1 21 0 798 221 70 0 chr3 165019904 165020062 -62504516 + MIR SINE MIR 2 170 -92 235 229 52 62 chr3 165020767 165020863 -62503715 + LTR33A LTR ERVL 55 149 -374 535 312 40 45 chr3 165020983 165021491 -62503087 + L2 LINE L2 2667 3313 0 329 323 78 34 chr3 165021704 165021973 -62502605 + L1M4 LINE L1 4415 4695 -1451 371 232 64 16 chr3 165022801 165022926 -62501652 + L1MA4 LINE L1 6041 6171 -129 21 0 0 0 chr3 165023212 165023233 -62501345 + AT_rich Low_complexity Low_complexity 1 21 0 997 133 0 0 chr3 165024566 165024709 -62499869 + AluSg/x SINE Alu 162 304 -6 3397 110 7 11 chr3 165024715 165025332 -62499246 + L1P4 LINE L1 5152 5765 -400 620 213 13 33 chr3 165025455 165025605 -62498973 + MLT1C LTR MaLR 321 467 0 221 255 0 0 chr3 165025607 165025654 -62498924 - L2 LINE L2 -228 3044 2998 954 248 145 16 chr3 165025658 165025961 -62498617 - LTR16A LTR ERVL -21 429 88 2074 80 21 0 chr3 165026814 165027103 -62497475 + AluY SINE Alu 1 295 -16 208 247 41 14 chr3 165027214 165027287 -62497291 + MIR SINE MIR 96 170 -92 273 307 50 10 chr3 165027747 165027848 -62496730 - MER5B DNA MER1_type -67 111 7 1103 262 76 30 chr3 165029522 165030064 -62494514 - L1M4 LINE L1 -1392 4754 4188 873 255 71 33 chr3 165030038 165030618 -62493960 - L1M4 LINE L1 -2612 3534 2933 * 521 344 25 32 chr3 165030920 165031205 -62493373 + L2 LINE L2 3031 3313 0 250 291 0 0 chr3 165031387 165031442 -62493136 + polypyrimidine Low_complexity Low_complexity 5 59 0 515 327 55 16 chr3 165031527 165031781 -62492797 + L2 LINE L2 2602 2865 -449 1734 265 73 59 chr3 165032467 165033332 -62491246 - L1ME1 LINE L1 -5 6161 5285 1452 224 19 14 chr3 165033356 165033726 -62490852 - L1MB7 LINE L1 -19 6165 5794 3047 250 43 34 chr3 165034581 165035658 -62488920 + L1M4 LINE L1 3729 4814 -1332 313 298 6 30 chr3 165035708 165035876 -62488702 + AluY SINE Alu 138 301 0 377 287 0 0 chr3 165036277 165036364 -62488214 - L2 LINE L2 -4 3309 3223 323 321 89 16 chr3 165038359 165038549 -62486029 - L2 LINE L2 -2 3311 3108 216 239 134 0 chr3 165039508 165039575 -62485003 + L2 LINE L2 3228 3303 -10 23 0 0 0 chr3 165040472 165040495 -62484083 + AT_rich Low_complexity Low_complexity 1 23 0 297 294 7 44 chr3 165040709 165040845 -62483733 + FRAM SINE Alu 29 159 -7 26 0 0 0 chr3 165041852 165041878 -62482700 + AT_rich Low_complexity Low_complexity 1 26 0 564 267 18 67 chr3 165043250 165043535 -62481043 - L1MEd LINE L1 -4908 1211 941 387 301 93 16 chr3 165043539 165043785 -62480793 - HAL1 LINE L1 0 2507 2243 1016 265 77 9 chr3 165043794 165044251 -62480327 - HAL1 LINE L1 -1167 1340 853 474 248 330 34 chr3 165044369 165044696 -62479882 - LTR28 LTR ERV1 -595 425 2 2772 101 30 11 chr3 165044981 165045417 -62479161 - MLT2A1 LTR ERVL 0 444 1 8588 83 2 1 chr3 165045540 165046649 -62477929 - HERVL LTR ERVL -571 5083 3974 1140 96 32 0 chr3 165046649 165046806 -62477772 - THE1A LTR MaLR -193 162 1 10477 120 28 7 chr3 165046806 165048348 -62476230 - THE1A-int LTR MaLR 0 1580 7 432 114 36 174 chr3 165048353 165048407 -62476171 - MLT2A1 LTR ERVL 0 444 384 291 28 0 0 chr3 165048407 165048443 -62476135 + (CA)n Simple_repeat Simple_repeat 2 37 0 432 114 36 174 chr3 165048443 165048555 -62476023 - MLT2A1 LTR ERVL -60 384 301 2124 126 32 20 chr3 165048657 165048998 -62475580 - MLT2A1 LTR ERVL -99 345 1 245 109 22 0 chr3 165049008 165049054 -62475524 + (CA)n Simple_repeat Simple_repeat 2 48 0 438 303 17 62 chr3 165049165 165049343 -62475235 - MIR3 SINE MIR -28 180 11 22 56 0 0 chr3 165049649 165049685 -62474893 + AT_rich Low_complexity Low_complexity 1 36 0 1087 151 0 0 chr3 165049717 165049889 -62474689 - L1PA15 LINE L1 -2 6163 5992 3482 103 6 0 chr3 165049891 165050377 -62474201 - L1PA15 LINE L1 -274 5891 5403 384 317 0 16 chr3 165052507 165052630 -62471948 + (TATATG)n Simple_repeat Simple_repeat 4 124 0 357 252 0 0 chr3 165052639 165052739 -62471839 + (TA)n Simple_repeat Simple_repeat 1 103 -8 1621 203 33 3 chr3 165052739 165053074 -62471504 + MER7A DNA MER2_type 1 343 -3 357 252 0 0 chr3 165053074 165053084 -62471494 + (TA)n Simple_repeat Simple_repeat 102 111 0 1647 326 72 21 chr3 165054169 165055211 -62469367 + L2 LINE L2 2198 3304 -9 237 83 0 0 chr3 165058338 165058374 -62466204 + (TG)n Simple_repeat Simple_repeat 2 37 0 464 285 134 39 chr3 165059274 165059789 -62464789 - L1M4 LINE L1 -1988 4158 3595 1099 155 35 43 chr3 165060000 165060258 -62464320 - L1MA4 LINE L1 -5 6295 6040 337 323 78 34 chr3 165061091 165061360 -62463218 - L1M4 LINE L1 -1451 4695 4415 2037 296 247 19 chr3 165061574 165063098 -62461480 - L2 LINE L2 0 3313 1303 390 328 60 30 chr3 165063163 165063395 -62461183 + MLT1J LTR MaLR 36 274 -237 1183 266 50 44 chr3 165065079 165065583 -62458995 - MLT1J LTR MaLR -4 507 1 22 56 0 0 chr3 165065650 165065686 -62458892 + AT_rich Low_complexity Low_complexity 1 36 0 258 205 265 43 chr3 165066018 165066135 -62458443 - L2 LINE L2 -5 3267 3125 770 301 88 55 chr3 165066379 165066948 -62457630 + MLT1K LTR MaLR 1 588 0 248 282 24 12 chr3 165067155 165067240 -62457338 - MER103 DNA DNA -77 89 4 522 344 25 32 chr3 165068153 165068438 -62456140 + L2 LINE L2 3031 3313 0 250 291 0 0 chr3 165068620 165068675 -62455903 + polypyrimidine Low_complexity Low_complexity 5 59 0 709 307 117 45 chr3 165068760 165069429 -62455149 + L2 LINE L2 2602 3308 -5 553 300 27 22 chr3 165071712 165071900 -62452678 - MIR SINE MIR -5 257 71 23 33 0 0 chr3 165072696 165072726 -62451852 + AT_rich Low_complexity Low_complexity 1 30 0 199 253 120 40 chr3 165073220 165073295 -62451283 - MIR SINE MIR -74 188 108 880 351 42 3 chr3 165073783 165074116 -62450462 - LTR16A LTR ERVL -13 437 92 1184 175 62 84 chr3 165074128 165074579 -62449999 - THE1C LTR MaLR 0 375 1 207 139 0 0 chr3 165074820 165074856 -62449722 + (GAAA)n Simple_repeat Simple_repeat 1 36 0 262 138 17 0 chr3 165076000 165076058 -62448520 - LTR66 LTR ERVL -158 452 394 180 176 0 0 chr3 165076058 165076092 -62448486 + (CATATA)n Simple_repeat Simple_repeat 6 39 0 749 358 138 25 chr3 165077257 165078254 -62446324 + L2 LINE L2 1427 2536 -778 186 322 67 22 chr3 165078321 165078411 -62446167 + L2 LINE L2 2650 2743 -571 10833 215 8 35 chr3 165078800 165081138 -62443440 + L1PA15 LINE L1 2829 5092 -1073 2183 132 0 0 chr3 165081138 165081448 -62443130 + AluSx SINE Alu 1 310 -2 10833 215 8 35 chr3 165081448 165082491 -62442087 + L1PA15 LINE L1 5092 6162 -3 195 277 15 31 chr3 165082494 165082559 -62442019 + L2 LINE L2 3160 3223 -49 200 250 12 71 chr3 165083345 165083429 -62441149 + MIR SINE MIR 118 196 -66 216 183 73 0 chr3 165087172 165087254 -62437324 + (TA)n Simple_repeat Simple_repeat 2 89 0 1112 90 0 0 chr3 165088333 165088478 -62436100 - AluSg/x SINE Alu -4 308 164 239 355 177 5 chr3 165089682 165089885 -62434693 + L3b LINE CR1 1129 1366 -217 321 353 15 15 chr3 165090520 165090653 -62433925 - MIR3 SINE MIR -40 168 36 1459 226 48 52 chr3 165091745 165092249 -62432329 - MLT1D LTR MaLR -3 502 1 424 264 46 0 chr3 165092542 165092629 -62431949 + MER81 DNA DNA 3 93 -21 213 91 0 0 chr3 165094937 165094970 -62429608 - L2 LINE L2 -2 3311 3279 180 77 0 0 chr3 165095784 165095810 -62428768 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1504 176 10 14 chr3 165097938 165098233 -62426345 + AluJb SINE Alu 1 294 -18 2178 115 0 10 chr3 165099086 165099400 -62425178 - AluY SINE Alu 0 311 1 315 0 0 0 chr3 165099579 165099614 -62424964 + (A)n Simple_repeat Simple_repeat 1 35 0 2166 81 3 0 chr3 165099982 165100265 -62424313 + AluY SINE Alu 1 284 -27 503 16 16 0 chr3 165100265 165100329 -62424249 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 289 283 93 61 chr3 165102566 165102909 -62421669 + L1ME4a LINE L1 5764 6117 -4 237 65 0 0 chr3 165103121 165103152 -62421426 + (A)n Simple_repeat Simple_repeat 1 31 0 297 341 98 0 chr3 165103201 165103333 -62421245 - MIR3 SINE MIR -11 197 53 23 0 0 0 chr3 165103337 165103360 -62421218 + AT_rich Low_complexity Low_complexity 1 23 0 423 132 0 0 chr3 165103471 165103539 -62421039 + (TA)n Simple_repeat Simple_repeat 1 68 0 350 122 0 95 chr3 165103751 165103825 -62420753 - Alu SINE Alu -7 295 244 313 272 166 41 chr3 165105765 165105934 -62418644 + MIR SINE MIR 73 262 0 1649 124 25 11 chr3 165105988 165106271 -62418307 - L1PB2 LINE L1 0 6151 5865 419 227 53 15 chr3 165106273 165106405 -62418173 + L1 LINE L1 3631 3767 -2379 * 6878 199 9 26 chr3 165106399 165108214 -62416364 + L1ME LINE L1 3703 5477 -644 1762 146 3 42 chr3 165108232 165108541 -62416037 + AluSx SINE Alu 6 302 -10 1408 171 60 39 chr3 165108546 165108731 -62415847 - THE1C LTR MaLR -35 340 143 2548 48 0 3 chr3 165108731 165109040 -62415538 + AluY SINE Alu 1 308 -3 1408 171 60 39 chr3 165109040 165109187 -62415391 - THE1C LTR MaLR -232 143 1 2688 136 11 2 chr3 165109190 165109623 -62414955 + L1PB1 LINE L1 5448 5884 -267 22 0 0 0 chr3 165110851 165110873 -62413705 + AT_rich Low_complexity Low_complexity 1 22 0 29 60 0 0 chr3 165111072 165111122 -62413456 + AT_rich Low_complexity Low_complexity 1 50 0 21 36 0 0 chr3 165111164 165111192 -62413386 + AT_rich Low_complexity Low_complexity 1 28 0 184 333 0 45 chr3 165111520 165111586 -62412992 - L2 LINE L2 -11 3261 3199 228 259 17 0 chr3 165111746 165111804 -62412774 - L2 LINE L2 -213 3059 3001 408 369 73 39 chr3 165112696 165113189 -62411389 - L2 LINE L2 -609 2705 2196 471 267 48 18 chr3 165113599 165113764 -62410814 - L1MCa LINE L1 -6253 173 4 * 921 214 53 79 chr3 165113761 165114121 -62410457 + L1ME LINE L1 4856 5208 -938 1683 167 0 11 chr3 165114121 165114428 -62410150 + AluSx SINE Alu 6 309 0 921 214 53 79 chr3 165114428 165114445 -62410133 + L1ME LINE L1 5208 5224 -922 198 0 0 0 chr3 165114453 165114475 -62410103 + (T)n Simple_repeat Simple_repeat 1 22 0 390 315 87 63 chr3 165114762 165115209 -62409369 + HAL1 LINE L1 844 1301 -1206 2245 142 18 2 chr3 165115211 165115737 -62408841 - L1PA16 LINE L1 -537 5629 5096 2918 141 53 4 chr3 165115737 165116248 -62408330 + L1PA16 LINE L1 5623 6158 -8 369 299 17 128 chr3 165116627 165116915 -62407663 - MIR SINE MIR -4 258 3 2038 123 0 3 chr3 165116937 165117222 -62407356 + AluSx SINE Alu 1 284 -28 318 50 0 0 chr3 165117227 165117267 -62407311 + (TAAA)n Simple_repeat Simple_repeat 2 41 0 2837 250 49 26 chr3 165117271 165118493 -62406085 + L1ME2 LINE L1 4911 6163 -1 400 319 64 41 chr3 165118912 165119304 -62405274 + L1ME LINE L1 5415 5815 -306 186 43 0 0 chr3 165119385 165119408 -62405170 + (CA)n Simple_repeat Simple_repeat 1 23 0 31 26 0 0 chr3 165120351 165120389 -62404189 + AT_rich Low_complexity Low_complexity 1 38 0 713 293 28 115 chr3 165120710 165121411 -62403167 - L2 LINE L2 -292 3021 2382 587 291 48 9 chr3 165121448 165121658 -62402920 - LTR16A1 LTR ERVL -17 440 223 1020 220 43 98 chr3 165121767 165122163 -62402415 + MLT1A2 LTR MaLR 1 374 0 215 309 217 0 chr3 165123086 165123238 -62401340 - L3 LINE CR1 -23 1554 1370 676 235 108 10 chr3 165123395 165123599 -62400979 - MIR SINE MIR -24 238 15 1273 124 45 10 chr3 165123621 165123822 -62400756 - AluY SINE Alu -6 305 98 22 56 0 0 chr3 165124672 165124708 -62399870 + AT_rich Low_complexity Low_complexity 1 36 0 28 29 0 0 chr3 165124731 165124766 -62399812 + AT_rich Low_complexity Low_complexity 1 35 0 224 367 0 0 chr3 165124776 165124866 -62399712 - MIR SINE MIR -17 245 156 232 211 0 0 chr3 165125000 165125057 -62399521 + MER57A LTR ERV1 347 403 0 559 217 9 9 chr3 165125269 165125384 -62399194 - LTR45 LTR ERV1 0 525 411 2782 187 8 8 chr3 165125918 165126443 -62398135 - LTR45 LTR ERV1 0 525 1 310 345 26 31 chr3 165126532 165126726 -62397852 + MLT1J LTR MaLR 246 438 -73 700 193 14 0 chr3 165126772 165126912 -62397666 + LTR45 LTR ERV1 63 204 -321 318 26 0 0 chr3 165127146 165127185 -62397393 + (CA)n Simple_repeat Simple_repeat 1 39 0 362 309 71 82 chr3 165127272 165127566 -62397012 - L1ME4a LINE L1 -99 6022 5732 4337 218 33 27 chr3 165127577 165128692 -62395886 - L1MD2 LINE L1 -3 6356 5236 925 269 22 45 chr3 165128697 165129009 -62395569 - MLT1A2 LTR MaLR -4 370 66 717 152 138 0 chr3 165129114 165129259 -62395319 + AluSg/x SINE Alu 134 298 -12 1925 253 63 21 chr3 165129279 165130091 -62394487 - L1MD2 LINE L1 -984 5162 4317 255 324 215 23 chr3 165131828 165132084 -62392494 - L3 LINE CR1 -109 1468 1164 266 239 0 60 chr3 165132146 165132213 -62392365 - L2 LINE L2 -5 3308 3246 709 320 4 9 chr3 165132230 165132461 -62392117 - MIR SINE MIR -5 257 28 209 333 119 43 chr3 165132776 165132986 -62391592 - L3 LINE CR1 -569 1008 783 256 309 65 50 chr3 165133841 165133980 -62390598 - MIR3 SINE MIR -63 145 5 301 316 85 50 chr3 165134136 165134418 -62390160 - LTR16A1 LTR ERVL 0 457 166 319 233 14 27 chr3 165134565 165134638 -62389940 - FLAM_A SINE Alu -15 118 47 23 33 0 0 chr3 165134728 165134758 -62389820 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr3 165135368 165135391 -62389187 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 165135468 165135490 -62389088 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 165135779 165135802 -62388776 + AT_rich Low_complexity Low_complexity 1 23 0 336 322 79 25 chr3 165136365 165136883 -62387695 - L1ME LINE L1 -368 5802 5257 399 256 108 14 chr3 165137080 165137303 -62387275 - L1ME LINE L1 -1438 4708 4465 23 0 0 0 chr3 165137344 165137367 -62387211 + AT_rich Low_complexity Low_complexity 1 23 0 2087 138 62 8 chr3 165137415 165137771 -62386807 - THE1C LTR MaLR 0 375 1 9599 125 49 7 chr3 165137771 165139288 -62385290 - THE1C-int LTR MaLR 0 1580 1 1834 119 84 38 chr3 165139288 165139632 -62384946 - THE1C LTR MaLR -15 360 1 249 57 0 0 chr3 165139804 165139839 -62384739 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1866 133 0 15 chr3 165140155 165140425 -62384153 + AluSx SINE Alu 1 266 -46 332 213 147 33 chr3 165140668 165140818 -62383760 - L1ME LINE L1 -3692 2454 2288 224 241 19 0 chr3 165141028 165141082 -62383496 + CT-rich Low_complexity Low_complexity 2 56 0 327 228 55 31 chr3 165141491 165141618 -62382960 - HAL1 LINE L1 -855 1652 1523 303 321 77 14 chr3 165141934 165142143 -62382435 + L1ME4a LINE L1 5742 5963 -158 1457 52 5 47 chr3 165142173 165142386 -62382192 - L1PA4 LINE L1 0 6155 5952 1091 56 0 7 chr3 165142388 165142530 -62382048 + L1PA4 LINE L1 5812 5952 -202 419 353 16 16 chr3 165143660 165143850 -62380728 + MIR3 SINE MIR 19 208 0 591 264 138 11 chr3 165144777 165145038 -62379540 - MER46C DNA MER2_type -43 295 2 185 311 120 55 chr3 165145922 165146105 -62378473 + MIR SINE MIR 51 245 -17 214 318 47 20 chr3 165148334 165148447 -62376131 + MER5A DNA MER1_type 27 154 -35 1176 197 87 63 chr3 165148447 165148746 -62375832 - AluJo SINE Alu -1 311 6 228 356 29 10 chr3 165149443 165149547 -62375031 - MIR SINE MIR -110 152 47 209 234 31 47 chr3 165150178 165150242 -62374336 + CT-rich Low_complexity Low_complexity 2 64 0 1354 208 47 32 chr3 165150386 165150728 -62373850 - MLT1A1 LTR MaLR 0 365 19 366 322 46 23 chr3 165151276 165151450 -62373128 + MER5B DNA MER1_type 1 178 0 405 253 0 0 chr3 165152094 165152181 -62372397 - Charlie8 DNA MER1_type -2223 194 108 198 288 68 0 chr3 165152402 165152475 -62372103 + L2 LINE L2 3180 3257 -56 263 396 110 0 chr3 165152491 165152673 -62371905 - MIR SINE MIR -49 213 12 25 65 0 0 chr3 165153190 165153236 -62371342 + AT_rich Low_complexity Low_complexity 1 46 0 27 62 0 0 chr3 165153371 165153419 -62371159 + AT_rich Low_complexity Low_complexity 1 48 0 5718 108 13 2 chr3 165153585 165154816 -62369762 - L1PA16 LINE L1 -2 6164 4949 41259 63 3 4 chr3 165154816 165160970 -62363608 - L1PA5 LINE L1 -3 6151 11 22 35 0 0 chr3 165162087 165162116 -62362462 + AT_rich Low_complexity Low_complexity 1 29 0 249 171 13 26 chr3 165162249 165162325 -62362253 + GA-rich Low_complexity Low_complexity 2 76 0 776 98 11 40 chr3 165162335 165162509 -62362069 + (GAAA)n Simple_repeat Simple_repeat 2 170 0 1002 224 10 5 chr3 165162529 165162725 -62361853 - MER8 DNA MER2_type 0 239 43 285 245 104 9 chr3 165163144 165163250 -62361328 - LTR33 LTR ERVL -85 436 321 666 306 14 0 chr3 165163311 165163527 -62361051 - LTR33 LTR ERVL -302 219 1 31 44 0 0 chr3 165163751 165163796 -62360782 + AT_rich Low_complexity Low_complexity 1 45 0 199 261 65 0 chr3 165164433 165164479 -62360099 + MIR SINE MIR 16 64 -144 1358 227 39 15 chr3 165164858 165165193 -62359385 - MLT1A1 LTR MaLR 0 365 23 437 62 15 0 chr3 165166057 165166122 -62358456 + (TA)n Simple_repeat Simple_repeat 1 66 0 467 278 68 46 chr3 165166140 165166507 -62358071 - HAL1 LINE L1 -1253 1254 880 278 355 127 0 chr3 165166608 165166797 -62357781 - HAL1 LINE L1 -1676 831 619 661 214 0 0 chr3 165167001 165167127 -62357451 - FRAM SINE Alu -47 129 4 335 294 27 48 chr3 165167772 165167918 -62356660 + L1MB8 LINE L1 6035 6177 -1 30 59 0 0 chr3 165169465 165169516 -62355062 + AT_rich Low_complexity Low_complexity 1 51 0 21 71 0 0 chr3 165170644 165170686 -62353892 + AT_rich Low_complexity Low_complexity 1 42 0 29 28 0 0 chr3 165170724 165170760 -62353818 + AT_rich Low_complexity Low_complexity 1 36 0 2113 104 0 0 chr3 165170962 165171278 -62353300 + AluSc SINE Alu 1 316 0 1341 242 50 59 chr3 165171856 165172278 -62352300 + MLT1D LTR MaLR 1 418 -87 360 212 82 0 chr3 165172274 165172359 -62352219 - MLT1A1 LTR MaLR -102 263 172 * 3737 86 4 4 chr3 165172391 165172889 -62351689 + THE1A-int LTR MaLR 1083 1580 0 2295 110 45 0 chr3 165172893 165173229 -62351349 + THE1A LTR MaLR 5 355 0 670 237 0 13 chr3 165173245 165173397 -62351181 - MLT1A1 LTR MaLR -215 150 1 1176 267 35 3 chr3 165173397 165173738 -62350840 + L1MD1 LINE L1 871 1222 -5318 1829 262 83 9 chr3 165173740 165174377 -62350201 + L1MD1 LINE L1 4013 4696 -1844 3260 207 50 19 chr3 165174421 165175175 -62349403 + L1MD1 LINE L1 5853 6630 -6 565 303 55 5 chr3 165175389 165175607 -62348971 - MARNA DNA Mariner -225 361 133 508 313 90 0 chr3 165176510 165176766 -62347812 + ERVL LTR ERVL 5206 5484 -280 269 298 128 21 chr3 165177647 165177835 -62346743 + L1ME LINE L1 5653 5860 -310 3571 231 31 13 chr3 165177850 165179177 -62345401 - L1MB8 LINE L1 -5 6671 5321 699 262 31 93 chr3 165179261 165179810 -62344768 - L1MB8 LINE L1 -3206 3438 2924 4054 254 76 28 chr3 165179819 165180362 -62344216 - L1MB8 LINE L1 -5053 1489 973 258 56 0 0 chr3 165180362 165180398 -62344180 + (TTTG)n Simple_repeat Simple_repeat 4 39 0 4054 254 76 28 chr3 165180398 165180501 -62344077 - L1MB8 LINE L1 -5569 973 876 246 32 0 0 chr3 165180501 165180532 -62344046 + (TG)n Simple_repeat Simple_repeat 1 31 0 4054 254 76 28 chr3 165180532 165181291 -62343287 - L1MB8 LINE L1 -5666 876 16 25 31 0 0 chr3 165181369 165181401 -62343177 + AT_rich Low_complexity Low_complexity 1 32 0 288 0 0 0 chr3 165182890 165182922 -62341656 + (TG)n Simple_repeat Simple_repeat 2 33 0 40 67 0 0 chr3 165183396 165183471 -62341107 + AT_rich Low_complexity Low_complexity 1 75 0 488 275 30 24 chr3 165184518 165184685 -62339893 + L1MC4 LINE L1 6461 6628 -1414 253 213 0 53 chr3 165184826 165184920 -62339658 + L1MC4 LINE L1 6618 6706 -1336 223 200 35 9 chr3 165184923 165185038 -62339540 + (TA)n Simple_repeat Simple_repeat 1 118 0 578 158 10 75 chr3 165185050 165185212 -62339366 + L1MB8 LINE L1 5745 5902 -281 699 98 27 0 chr3 165185244 165185356 -62339222 + L1MB8 LINE L1 6059 6173 -5 247 180 0 0 chr3 165185385 165185435 -62339143 + L1MC4 LINE L1 7000 7049 -993 1438 225 51 22 chr3 165185474 165185488 -62339090 + L1MC4 LINE L1 7239 7251 -791 890 251 263 53 chr3 165185488 165185978 -62338600 - MLT1E LTR MaLR 0 593 1 1438 225 51 22 chr3 165185978 165186377 -62338201 + L1MC4 LINE L1 7251 7664 -378 * 2655 178 30 19 chr3 165186375 165186697 -62337881 - L1M2 LINE L1 -498 5814 5497 180 111 0 0 chr3 165186697 165186724 -62337854 + (TTTG)n Simple_repeat Simple_repeat 3 29 0 2655 178 30 19 chr3 165186724 165186967 -62337611 - L1M2 LINE L1 -815 5497 5258 1488 262 6 6 chr3 165186967 165187330 -62337248 + MLT1A1 LTR MaLR 3 365 0 2655 178 30 19 chr3 165187330 165187663 -62336915 - L1M2 LINE L1 -1054 5258 4899 1300 189 12 4 chr3 165187656 165187905 -62336673 + L1MB1 LINE L1 5817 6067 -101 * 868 212 38 57 chr3 165187938 165188202 -62336376 + L1MA10 LINE L1 6060 6318 -16 435 234 40 0 chr3 165188256 165188380 -62336198 + L1MC4 LINE L1 7689 7817 -225 24 32 0 0 chr3 165188437 165188468 -62336110 + AT_rich Low_complexity Low_complexity 1 31 0 988 149 40 17 chr3 165188524 165188698 -62335880 + L1PB4 LINE L1 5978 6155 -1 1761 199 22 14 chr3 165188842 165189199 -62335379 - L1MC1 LINE L1 -62 6271 5912 200 292 0 0 chr3 165189530 165189578 -62335000 - L2 LINE L2 -1 3312 3265 771 182 6 0 chr3 165189578 165189737 -62334841 - L1MA5 LINE L1 -7 6293 6134 477 214 56 8 chr3 165189764 165189890 -62334688 + L1MA4 LINE L1 5987 6118 -182 270 358 128 21 chr3 165189932 165190175 -62334403 + L2 LINE L2 2871 3139 -174 231 352 0 0 chr3 165190379 165190450 -62334128 + L2 LINE L2 3242 3312 -1 183 80 0 0 chr3 165190478 165190503 -62334075 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 339 353 32 13 chr3 165190598 165190754 -62333824 - L2 LINE L2 -248 3024 2866 503 69 14 0 chr3 165191694 165191766 -62332812 + (TTTTC)n Simple_repeat Simple_repeat 2 74 0 195 270 111 0 chr3 165192398 165192461 -62332117 + MIR SINE MIR 125 194 -68 22 0 0 0 chr3 165193792 165193814 -62330764 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 165193938 165193965 -62330613 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr3 165194838 165194865 -62329713 + AT_rich Low_complexity Low_complexity 1 27 0 682 25 0 0 chr3 165194865 165194944 -62329634 - L1PA4 LINE L1 -66 6089 6011 1223 89 0 0 chr3 165194944 165195102 -62329476 + AluY SINE Alu 137 294 -17 21 0 0 0 chr3 165195526 165195547 -62329031 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 165195886 165195915 -62328663 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 165196155 165196177 -62328401 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr3 165196984 165197019 -62327559 + AT_rich Low_complexity Low_complexity 1 35 0 750 193 7 7 chr3 165198266 165198416 -62326162 - FRAM SINE Alu -13 153 4 1145 199 60 34 chr3 165198546 165198897 -62325681 + MER46B DNA MER2_type 2 236 0 31 44 0 0 chr3 165198910 165198955 -62325623 + AT_rich Low_complexity Low_complexity 1 45 0 1937 266 53 22 chr3 165200575 165201095 -62323483 - L1MC2 LINE L1 -16 8210 7707 953 227 68 68 chr3 165201095 165201460 -62323118 - MLT1A1 LTR MaLR 0 365 1 1937 266 53 22 chr3 165201460 165201667 -62322911 - L1MC2 LINE L1 -519 7707 6555 1011 223 48 95 chr3 165201673 165202085 -62322493 - L1MC2 LINE L1 -487 6095 5708 977 259 61 23 chr3 165202091 165202906 -62321672 - L1MC2 LINE L1 -832 5732 4838 1590 159 62 56 chr3 165202941 165203280 -62321298 - MLT1B LTR MaLR 0 390 50 209 189 0 0 chr3 165203306 165203343 -62321235 + CT-rich Low_complexity Low_complexity 2 38 0 22 0 0 0 chr3 165203367 165203389 -62321189 + AT_rich Low_complexity Low_complexity 1 22 0 990 308 114 22 chr3 165203447 165204071 -62320507 - L1MC2 LINE L1 -4925 1121 441 1630 213 54 56 chr3 165204255 165204720 -62319858 + MLT1C LTR MaLR 4 467 0 1244 130 0 4 chr3 165204851 165205120 -62319458 - THE1B LTR MaLR 0 364 1 9757 117 53 5 chr3 165205120 165206627 -62317951 - THE1B-int LTR MaLR 0 1580 1 2327 135 3 3 chr3 165206627 165206991 -62317587 - THE1B LTR MaLR 0 364 1 287 276 55 73 chr3 165207030 165207302 -62317276 - L1MC2 LINE L1 -5751 294 28 260 137 20 0 chr3 165208704 165208755 -62315823 + (TA)n Simple_repeat Simple_repeat 1 52 0 23 0 0 0 chr3 165208868 165208891 -62315687 + AT_rich Low_complexity Low_complexity 1 23 0 335 326 53 8 chr3 165209274 165209406 -62315172 - MIR SINE MIR -33 229 92 515 249 77 48 chr3 165209624 165209833 -62314745 - MER20 DNA MER1_type 0 219 5 203 290 188 28 chr3 165209994 165210170 -62314408 - MIR SINE MIR -10 252 49 21 82 0 0 chr3 165210210 165210259 -62314319 + AT_rich Low_complexity Low_complexity 1 49 0 2070 214 62 19 chr3 165211618 165212104 -62312474 - MLT2B2 LTR ERVL -8 507 1 216 200 67 0 chr3 165212199 165212244 -62312334 - MIR SINE MIR -117 145 98 23 0 0 0 chr3 165212284 165212307 -62312271 + AT_rich Low_complexity Low_complexity 1 23 0 386 311 75 16 chr3 165212348 165212724 -62311854 - HAL1 LINE L1 -136 2371 1974 704 282 37 8 chr3 165212759 165213000 -62311578 - HAL1 LINE L1 -611 1896 1649 277 326 95 48 chr3 165213559 165213875 -62310703 + HERV16 LTR ERVL 879 1209 -3787 1706 186 3 22 chr3 165214066 165214384 -62310194 - AluJb SINE Alu 0 312 1 753 237 171 5 chr3 165214392 165214603 -62309975 + MLT1A1 LTR MaLR 1 246 -119 1765 118 7 32 chr3 165214609 165214889 -62309689 + AluSx SINE Alu 1 273 -39 219 36 0 0 chr3 165214889 165214917 -62309661 + (TC)n Simple_repeat Simple_repeat 2 29 0 207 0 0 0 chr3 165214916 165214939 -62309639 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 1059 117 0 0 chr3 165214938 165215100 -62309478 + (TA)n Simple_repeat Simple_repeat 1 162 0 201 138 0 0 chr3 165215200 165215229 -62309349 + (CATATA)n Simple_repeat Simple_repeat 4 32 0 327 322 0 0 chr3 165215230 165215320 -62309258 + L1MC4 LINE L1 6614 6703 -1339 * 401 256 0 0 chr3 165215240 165215330 -62309248 - L1MC4 LINE L1 -1339 6703 6614 491 221 26 0 chr3 165215335 165215448 -62309130 + MLT1A1 LTR MaLR 250 365 0 453 366 128 0 chr3 165215865 165216163 -62308415 + HERV16 LTR ERVL 1911 2246 -3518 317 340 101 19 chr3 165216164 165216323 -62308255 + MLT1H LTR MaLR 162 333 -216 475 285 30 12 chr3 165216462 165216627 -62307951 + MLT1H LTR MaLR 382 549 0 342 250 0 13 chr3 165216807 165216883 -62307695 + MER96 DNA MER1_type? 98 172 -3 251 294 0 0 chr3 165217568 165217636 -62306942 + MLT1-int LTR MaLR 812 879 -492 437 285 166 46 chr3 165218132 165218416 -62306162 + MLT1H LTR MaLR 232 549 0 21 36 0 0 chr3 165218453 165218481 -62306097 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 165218795 165218820 -62305758 + AT_rich Low_complexity Low_complexity 1 25 0 35 71 0 0 chr3 165218870 165218940 -62305638 + AT_rich Low_complexity Low_complexity 1 70 0 516 151 0 0 chr3 165219664 165219750 -62304828 - AluSg/x SINE Alu -7 302 217 1242 82 0 24 chr3 165219750 165219920 -62304658 - AluY SINE Alu -145 166 1 221 274 32 0 chr3 165220504 165220566 -62304012 + (TCTA)n Simple_repeat Simple_repeat 1 64 0 25 102 0 0 chr3 165220807 165220895 -62303683 + AT_rich Low_complexity Low_complexity 1 88 0 1164 249 29 40 chr3 165220972 165221350 -62303228 - MLT1A2 LTR MaLR 0 374 1 35 41 0 0 chr3 165224391 165224440 -62300138 + AT_rich Low_complexity Low_complexity 1 49 0 480 280 221 23 chr3 165225703 165226188 -62298390 + L1M4 LINE L1 4158 4738 -1408 361 278 0 22 chr3 165226526 165226616 -62297962 + L2 LINE L2 3002 3089 -224 530 271 100 12 chr3 165227756 165227926 -62296652 + MIR SINE MIR 77 261 -1 342 395 38 0 chr3 165228356 165228566 -62296012 + L1ME LINE L1 84 301 -6095 691 284 155 18 chr3 165228670 165229173 -62295405 + L1ME LINE L1 1262 1833 -4563 23 33 0 0 chr3 165229176 165229206 -62295372 + AT_rich Low_complexity Low_complexity 1 30 0 248 313 17 9 chr3 165229226 165229341 -62295237 + L1ME LINE L1 1951 2066 -4330 928 243 24 9 chr3 165229345 165229555 -62295023 + MER20 DNA MER1_type 7 219 0 788 279 77 19 chr3 165229643 165230270 -62294308 + L1ME LINE L1 2149 2773 -3442 1853 132 73 22 chr3 165230270 165230627 -62293951 + THE1C LTR MaLR 1 375 0 541 289 122 5 chr3 165230647 165231024 -62293554 + L1ME LINE L1 2848 3268 -2947 1510 291 33 6 chr3 165231086 165231143 -62293435 + L1ME LINE L1 4477 4531 -1684 1570 215 0 13 chr3 165231143 165231454 -62293124 + AluJb SINE Alu 1 307 -5 1510 291 33 6 chr3 165231454 165232063 -62292515 + L1ME LINE L1 4531 5161 -1054 810 284 66 4 chr3 165232091 165232452 -62292126 + L1ME LINE L1 5249 5637 -596 1273 220 35 43 chr3 165232764 165233132 -62291446 + MLT1A1 LTR MaLR 1 365 0 232 130 117 39 chr3 165233475 165233552 -62291026 - Charlie2a DNA MER1_type -35 2827 2745 411 248 103 7 chr3 165233790 165233935 -62290643 - Charlie2a DNA MER1_type -1216 1646 1488 854 258 33 59 chr3 165234131 165234437 -62290141 - Charlie2a DNA MER1_type -2564 298 1 207 204 0 0 chr3 165236292 165236336 -62288242 + (TTA)n Simple_repeat Simple_repeat 2 45 0 347 339 55 6 chr3 165236416 165236581 -62287997 - MIR SINE MIR -86 176 4 5153 154 12 31 chr3 165236843 165238482 -62286096 - L1PA15 LINE L1 -3 6162 4523 23 68 0 0 chr3 165239287 165239331 -62285247 + AT_rich Low_complexity Low_complexity 1 44 0 306 348 136 7 chr3 165239412 165239567 -62285011 - MER5B DNA MER1_type -3 175 1 295 316 146 25 chr3 165240770 165241093 -62283485 + HAL1b LINE L1 83 444 -904 645 108 0 0 chr3 165241322 165241415 -62283163 + L1MA3 LINE L1 6213 6305 0 23 78 0 0 chr3 165241654 165241705 -62282873 + AT_rich Low_complexity Low_complexity 1 51 0 333 343 151 43 chr3 165242923 165243360 -62281218 + L2 LINE L2 2829 3312 -1 488 223 138 100 chr3 165244346 165244794 -62279784 + LTR37B LTR ERV1 4 468 0 23 0 0 0 chr3 165246299 165246322 -62278256 + AT_rich Low_complexity Low_complexity 1 23 0 2065 107 4 0 chr3 165246322 165246603 -62277975 + AluSp SINE Alu 21 302 -11 32 26 0 0 chr3 165246749 165246788 -62277790 + AT_rich Low_complexity Low_complexity 1 39 0 191 382 44 0 chr3 165248009 165248077 -62276501 + L3 LINE CR1 225 295 -1282 656 239 32 16 chr3 165248227 165248415 -62276163 + MIR SINE MIR 72 262 0 1659 279 85 34 chr3 165248420 165249007 -62275571 + MLT1E2 LTR MaLR 1 617 -9 234 62 0 0 chr3 165249756 165249788 -62274790 + (CA)n Simple_repeat Simple_repeat 2 33 0 1696 163 3 7 chr3 165250038 165250320 -62274258 - AluSx SINE Alu -16 296 16 1155 98 0 0 chr3 165250322 165250485 -62274093 + L1PA11 LINE L1 6009 6171 -3 2179 104 3 3 chr3 165251237 165251544 -62273034 - AluSp SINE Alu -6 307 1 335 289 33 44 chr3 165252081 165252261 -62272317 + L1MA8 LINE L1 2490 2667 -3479 * 1008 220 48 37 chr3 165252259 165252398 -62272180 - L1MA5 LINE L1 -387 5913 5777 450 0 0 0 chr3 165252398 165252448 -62272130 + (TA)n Simple_repeat Simple_repeat 2 51 0 1008 220 48 37 chr3 165252448 165252603 -62271975 - L1MA5 LINE L1 -523 5777 5616 324 0 0 0 chr3 165252883 165252919 -62271659 + (TA)n Simple_repeat Simple_repeat 2 37 0 5456 182 16 46 chr3 165252921 165254641 -62269937 - L1M2 LINE L1 -520 5780 4119 862 254 18 21 chr3 165254638 165254873 -62269705 + L1MA8 LINE L1 2671 2906 -3240 * 2434 72 0 3 chr3 165254873 165255179 -62269399 + AluY SINE Alu 1 305 -6 862 254 18 21 chr3 165255179 165255226 -62269352 + L1MA8 LINE L1 2906 2952 -3194 2240 139 6 17 chr3 165255226 165255585 -62268993 - THE1A LTR MaLR 0 355 1 11194 115 5 1 chr3 165255590 165257158 -62267420 - THE1A-int LTR MaLR -7 1573 1 2301 117 14 8 chr3 165257160 165257511 -62267067 - THE1A LTR MaLR -2 353 1 1259 208 89 5 chr3 165257512 165257916 -62266662 + L1MA8 LINE L1 2949 3386 -2760 * 4303 204 61 17 chr3 165257904 165258051 -62266527 + L1MA8 LINE L1 4050 4189 -1957 2077 133 7 0 chr3 165258051 165258344 -62266234 + AluSx SINE Alu 3 297 -15 4303 204 61 17 chr3 165258344 165259313 -62265265 + L1MA8 LINE L1 4189 5215 -931 4338 172 41 38 chr3 165259360 165260151 -62264427 + L1MA8 LINE L1 5328 6124 -167 2356 97 0 0 chr3 165260151 165260459 -62264119 + AluSx SINE Alu 5 312 0 4338 172 41 38 chr3 165260459 165260624 -62263954 + L1MA8 LINE L1 6124 6287 -4 252 288 45 9 chr3 165260899 165261010 -62263568 + MIR SINE MIR 148 262 0 342 300 90 47 chr3 165261404 165261637 -62262941 - L1ME4a LINE L1 -45 6076 5834 198 362 81 16 chr3 165262116 165262362 -62262216 - L2 LINE L2 -1108 2206 1945 24 0 0 0 chr3 165262379 165262403 -62262175 + AT_rich Low_complexity Low_complexity 1 24 0 1623 251 45 19 chr3 165262753 165263284 -62261294 - L1M4 LINE L1 -1691 4455 3911 324 345 70 18 chr3 165263765 165263936 -62260642 + MIR3 SINE MIR 23 202 -6 303 279 87 38 chr3 165265106 165265289 -62259289 + MIR SINE MIR 53 244 -18 1280 263 63 43 chr3 165265672 165266126 -62258452 - MER77 LTR ERV1 -4 601 144 421 333 38 12 chr3 165267814 165268054 -62256524 - MER46C DNA MER2_type -31 307 62 2082 169 4 72 chr3 165268084 165268208 -62256370 + L1PA16 LINE L1 5726 5857 -309 1908 145 0 0 chr3 165268208 165268533 -62256045 + AluSx SINE Alu 1 325 0 2082 169 4 72 chr3 165268533 165268880 -62255698 + L1PA16 LINE L1 5857 6166 0 21 36 0 0 chr3 165269380 165269408 -62255170 + AT_rich Low_complexity Low_complexity 1 28 0 356 235 0 0 chr3 165270655 165270736 -62253842 + MLT2B1 LTR ERVL 440 520 0 352 239 8 17 chr3 165270911 165271028 -62253550 - L1MC3 LINE L1 -785 7000 6885 1478 54 5 0 chr3 165271037 165271222 -62253356 - L1PA3 LINE L1 -3 6152 5967 1462 223 123 44 chr3 165271685 165272166 -62252412 + MLT2B1 LTR ERVL 2 520 0 259 341 63 65 chr3 165272296 165272536 -62252042 - L2 LINE L2 -421 2893 2654 1963 146 0 0 chr3 165272536 165272850 -62251728 + AluSx SINE Alu 3 316 0 259 341 63 65 chr3 165272850 165273098 -62251480 - L2 LINE L2 -660 2654 2403 925 130 8 0 chr3 165273110 165273241 -62251337 + AluJb SINE Alu 1 132 -180 303 149 21 0 chr3 165273244 165273291 -62251287 + AluJ/FRAM SINE Alu 233 280 -22 189 0 0 0 chr3 165273291 165273312 -62251266 + (CAAT)n Simple_repeat Simple_repeat 4 24 0 205 143 0 48 chr3 165273572 165273614 -62250964 + (TATG)n Simple_repeat Simple_repeat 3 42 0 23 0 0 0 chr3 165273722 165273745 -62250833 + AT_rich Low_complexity Low_complexity 1 23 0 221 340 33 33 chr3 165274404 165274554 -62250024 - L2 LINE L2 -1 3312 3163 25 0 0 0 chr3 165274880 165274905 -62249673 + AT_rich Low_complexity Low_complexity 1 25 0 27 49 0 0 chr3 165274955 165274996 -62249582 + AT_rich Low_complexity Low_complexity 1 41 0 454 158 53 0 chr3 165275257 165275352 -62249226 + MER50 LTR ERV1 499 598 -136 2679 77 0 11 chr3 165276524 165276886 -62247692 + L1PA7 LINE L1 5797 6154 0 252 0 0 0 chr3 165276890 165276918 -62247660 + (CA)n Simple_repeat Simple_repeat 1 28 0 276 130 0 0 chr3 165276923 165276969 -62247609 + (GA)n Simple_repeat Simple_repeat 2 47 0 1788 304 89 14 chr3 165276969 165278189 -62246389 + L1MEc LINE L1 679 1990 -4406 235 317 78 22 chr3 165278447 165278627 -62245951 - MIR SINE MIR -8 254 65 222 192 0 0 chr3 165279074 165279126 -62245452 + GA-rich Low_complexity Low_complexity 2 53 0 1640 208 109 115 chr3 165279910 165280659 -62243919 + LTR1B LTR ERV1 1 745 -81 471 286 0 8 chr3 165280737 165280856 -62243722 + LTR28 LTR ERV1 899 1016 -4 793 222 21 56 chr3 165282880 165283114 -62241464 - L1MA10 LINE L1 -7 6327 6102 396 100 17 0 chr3 165283117 165283177 -62241401 + L1MB1 LINE L1 6030 6090 -99 207 0 0 0 chr3 165283886 165283909 -62240669 + (CA)n Simple_repeat Simple_repeat 2 24 0 1109 225 0 0 chr3 165284655 165284931 -62239647 - L1MA4 LINE L1 0 6300 6025 1827 102 102 0 chr3 165284972 165285250 -62239328 - AluSx SINE Alu 0 304 1 477 289 151 7 chr3 165286233 165286385 -62238193 + MER5A DNA MER1_type 9 182 -7 225 65 0 0 chr3 165286547 165286578 -62238000 + (TG)n Simple_repeat Simple_repeat 1 31 0 21 36 0 0 chr3 165288604 165288632 -62235946 + AT_rich Low_complexity Low_complexity 1 28 0 1440 239 94 97 chr3 165289082 165289679 -62234899 - LTR1B LTR ERV1 -42 784 188 6464 64 23 0 chr3 165289679 165290663 -62233915 - L1PA7 LINE L1 -8 6146 5135 1440 239 94 97 chr3 165290663 165290851 -62233727 - LTR1B LTR ERV1 -638 188 1 216 0 0 0 chr3 165290855 165290879 -62233699 + (T)n Simple_repeat Simple_repeat 1 24 0 26 50 0 0 chr3 165291357 165291397 -62233181 + AT_rich Low_complexity Low_complexity 1 40 0 5923 74 59 1 chr3 165292269 165293050 -62231528 + LTR12 LTR ERV1 1 826 0 14879 108 22 11 chr3 165293062 165296045 -62228533 + HERV9 LTR ERV1 40 3139 -5260 5902 104 13 13 chr3 165296052 165296917 -62227661 + HERV9 LTR ERV1 4080 4944 -3455 935 86 43 120 chr3 165296920 165297245 -62227333 + Harlequin LTR ERV1 842 1141 -5755 * 6219 99 35 0 chr3 165297243 165298110 -62226468 + Harlequin LTR ERV1 7503 8399 0 6015 69 59 1 chr3 165298110 165298891 -62225687 + LTR12 LTR ERV1 1 826 0 203 162 0 0 chr3 165298909 165298946 -62225632 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 234 319 38 76 chr3 165299337 165299522 -62225056 + L2 LINE L2 2607 2784 -530 421 313 64 44 chr3 165299807 165300056 -62224522 - L2 LINE L2 -2 3311 3058 382 315 123 27 chr3 165300209 165300469 -62224109 - L2 LINE L2 -538 2776 2492 544 281 12 6 chr3 165301806 165301970 -62222608 - Zaphod DNA AcHobo 0 4031 3867 358 219 94 101 chr3 165302314 165302449 -62222129 - Zaphod DNA AcHobo -2982 1049 915 1204 129 5 5 chr3 165302449 165302651 -62221927 + L1MA2 LINE L1 6103 6304 0 358 219 94 101 chr3 165302651 165302939 -62221639 - Zaphod DNA AcHobo -3116 915 629 918 208 42 23 chr3 165302939 165303155 -62221423 - MER58A DNA MER1_type 0 224 5 556 299 36 6 chr3 165306642 165306809 -62217769 + MIR SINE MIR 7 178 -84 21 57 0 0 chr3 165308698 165308733 -62215845 + AT_rich Low_complexity Low_complexity 1 35 0 369 43 0 0 chr3 165311476 165311523 -62213055 + (CA)n Simple_repeat Simple_repeat 2 48 0 184 111 0 0 chr3 165312218 165312245 -62212333 - L2 LINE L2 -9 3304 3278 766 164 22 0 chr3 165312245 165312379 -62212199 + LTR54B LTR ERV1 1 137 -361 234 0 0 0 chr3 165312379 165312405 -62212173 + (CAAAA)n Simple_repeat Simple_repeat 5 30 0 755 238 139 4 chr3 165312405 165312686 -62211892 + LTR54B LTR ERV1 179 497 -1 735 267 82 21 chr3 165312698 165313114 -62211464 - L2 LINE L2 -121 3192 2743 699 224 138 5 chr3 165314920 165315116 -62209462 + MLT1G1 LTR MaLR 374 595 0 789 125 0 29 chr3 165315176 165315312 -62209266 + L1PA16 LINE L1 6032 6163 -3 1951 122 11 11 chr3 165315462 165315749 -62208829 + AluSg SINE Alu 4 290 -20 222 239 0 0 chr3 165315888 165315959 -62208619 + (TA)n Simple_repeat Simple_repeat 1 71 0 414 303 77 27 chr3 165316022 165316388 -62208190 + L1MDa LINE L1 2267 2650 -3890 2477 215 47 65 chr3 165316441 165317106 -62207472 - MER82 DNA MER2_type 0 653 1 1343 287 57 16 chr3 165317145 165318005 -62206573 + L1MDa LINE L1 2733 3665 -2875 2149 75 0 17 chr3 165318005 165318297 -62206281 + AluY SINE Alu 7 293 -18 1343 287 57 16 chr3 165318297 165318474 -62206104 + L1MDa LINE L1 3665 3833 -2707 605 264 170 34 chr3 165318470 165318784 -62205794 + L1MB3 LINE L1 4566 4836 -1622 * 183 80 0 0 chr3 165318784 165318809 -62205769 + (TAGA)n Simple_repeat Simple_repeat 1 25 0 605 264 170 34 chr3 165318809 165319505 -62205073 + L1MB3 LINE L1 4836 5715 -743 3116 113 4 0 chr3 165319533 165320000 -62204578 - L1PA13 LINE L1 -2 6161 5693 1184 181 47 0 chr3 165320004 165320236 -62204342 + L1P LINE L1 4549 4791 -1355 530 154 134 13 chr3 165320395 165320544 -62204034 + L1MB3 LINE L1 6016 6182 -1 1426 287 87 45 chr3 165320618 165321259 -62203319 - MER69 DNA AcHobo -558 668 1 1569 260 67 2 chr3 165321585 165322046 -62202532 + MER110 LTR ERV1 1 491 0 216 267 33 0 chr3 165322402 165322462 -62202116 + MIR SINE MIR 80 141 -121 2393 181 5 5 chr3 165322504 165322935 -62201643 - MSTB1 LTR MaLR -1 431 1 1911 215 109 60 chr3 165324083 165324734 -62199844 - L1MC2 LINE L1 -26 6318 5636 1458 188 30 51 chr3 165324743 165324770 -62199808 - MER7A DNA MER2_type -2712 326 300 2565 93 3 0 chr3 165324770 165325124 -62199454 + THE1A LTR MaLR 1 355 0 1458 188 30 51 chr3 165325124 165325431 -62199147 - MER7A DNA MER2_type -2738 300 1 21 0 0 0 chr3 165325805 165325826 -62198752 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 165325863 165325885 -62198693 + AT_rich Low_complexity Low_complexity 1 22 0 5191 176 32 16 chr3 165326042 165327842 -62196736 + L1MA4 LINE L1 4327 6166 -134 186 43 0 0 chr3 165327842 165327865 -62196713 + (CA)n Simple_repeat Simple_repeat 2 24 0 5191 176 32 16 chr3 165327865 165328001 -62196577 + L1MA4 LINE L1 6166 6298 -2 199 373 20 10 chr3 165328563 165328665 -62195913 - MIR3 SINE MIR -24 184 82 183 80 0 0 chr3 165330100 165330125 -62194453 + (TC)n Simple_repeat Simple_repeat 1 25 0 929 229 29 29 chr3 165332848 165333163 -62191415 - Charlie1 DNA MER1_type 0 2761 2447 2384 156 19 16 chr3 165334089 165334520 -62190058 - MSTB1 LTR MaLR 0 432 1 1612 192 27 24 chr3 165334520 165334858 -62189720 - MSTB1-int LTR MaLR -1 1650 1312 1267 308 47 5 chr3 165334872 165335275 -62189303 - MSTB1-int LTR MaLR -615 1036 617 881 180 15 20 chr3 165335275 165335475 -62189103 + MSTB1 LTR MaLR 218 416 -16 1642 196 8 32 chr3 165335508 165335588 -62188990 - MSTB1-int LTR MaLR -1286 365 285 273 75 0 0 chr3 165335588 165335628 -62188950 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 1642 196 8 32 chr3 165335628 165335920 -62188658 - MSTB1-int LTR MaLR -1366 285 2 2198 144 90 3 chr3 165335922 165336311 -62188267 - MSTB1 LTR MaLR -1 431 9 580 296 87 0 chr3 165338082 165338254 -62186324 - MIR SINE MIR -10 252 66 1035 229 93 67 chr3 165338256 165338309 -62186269 + L1MEc LINE L1 1626 1676 -4720 1886 118 50 0 chr3 165338309 165338589 -62185989 + AluSx SINE Alu 1 294 -18 1035 229 93 67 chr3 165338589 165338621 -62185957 + L1MEc LINE L1 1676 1706 -4690 234 0 0 0 chr3 165338621 165338647 -62185931 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1035 229 93 67 chr3 165338647 165339035 -62185543 + L1MEc LINE L1 1706 2112 -4284 273 243 29 0 chr3 165339026 165339096 -62185482 + L1MC/D LINE L1 5804 5875 -484 * 30 27 0 0 chr3 165339138 165339175 -62185403 + AT_rich Low_complexity Low_complexity 1 37 0 399 219 63 11 chr3 165339513 165339665 -62184913 + MLT1A1 LTR MaLR 1 230 -135 279 244 115 13 chr3 165339869 165340025 -62184553 - L1MEd LINE L1 -5055 1064 893 24 0 0 0 chr3 165340050 165340074 -62184504 + AT_rich Low_complexity Low_complexity 1 24 0 2123 110 0 0 chr3 165340107 165340420 -62184158 - AluSq SINE Alu 0 316 4 345 109 0 0 chr3 165340891 165340946 -62183632 + (TG)n Simple_repeat Simple_repeat 2 56 0 237 279 57 71 chr3 165341201 165341341 -62183237 - L1MEd LINE L1 -5970 149 12 2297 89 16 0 chr3 165341374 165341678 -62182900 - AluSc SINE Alu 0 309 1 234 0 0 0 chr3 165341778 165341804 -62182774 + (TG)n Simple_repeat Simple_repeat 2 27 0 21 71 0 0 chr3 165342052 165342094 -62182484 + AT_rich Low_complexity Low_complexity 1 42 0 1813 170 46 14 chr3 165343961 165344332 -62180246 - L1MB1 LINE L1 0 6168 5786 2216 176 0 69 chr3 165344336 165344456 -62180122 + L1M3 LINE L1 5165 5292 -876 547 223 8 0 chr3 165344456 165344577 -62180001 - L1PB4 LINE L1 -7 6149 6028 2216 176 0 69 chr3 165344577 165345082 -62179496 + L1M3 LINE L1 5292 5751 -417 426 176 0 0 chr3 165345808 165345893 -62178685 + GA-rich Low_complexity Low_complexity 3 87 0 224 71 0 0 chr3 165345902 165345930 -62178648 + (AGGGGG)n Simple_repeat Simple_repeat 6 33 0 184 262 0 0 chr3 165346933 165346975 -62177603 - MIR SINE MIR -1 261 220 * 660 302 117 13 chr3 165346943 165347241 -62177337 - L2 LINE L2 -17 3296 2968 357 285 26 104 chr3 165347472 165347742 -62176836 - L2 LINE L2 -447 2867 2619 460 306 150 52 chr3 165347743 165347999 -62176579 - L2 LINE L2 -881 2433 2129 3874 175 42 53 chr3 165347999 165348964 -62175614 + LTR13 LTR ERVK 1 954 0 460 306 150 52 chr3 165348964 165349073 -62175505 - L2 LINE L2 -1185 2129 2032 273 294 67 93 chr3 165349084 165349131 -62175447 - L2 LINE L2 -1523 1791 1744 1717 134 202 3 chr3 165349131 165349488 -62175090 - MSTA LTR MaLR 0 428 1 273 294 67 93 chr3 165349488 165349753 -62174825 - L2 LINE L2 -1570 1744 1487 180 363 137 24 chr3 165350520 165350644 -62173934 - L2 LINE L2 -3 3269 3132 1955 128 7 0 chr3 165350794 165351103 -62173475 - AluSq SINE Alu 0 311 1 264 145 0 43 chr3 165351583 165351652 -62172926 + (TA)n Simple_repeat Simple_repeat 2 67 0 204 194 32 32 chr3 165351680 165351773 -62172805 + (TA)n Simple_repeat Simple_repeat 2 94 0 482 79 13 0 chr3 165352289 165352365 -62172213 + (TA)n Simple_repeat Simple_repeat 2 78 0 363 247 0 82 chr3 165352404 165352501 -62172077 + L2 LINE L2 3223 3311 -2 329 293 27 47 chr3 165354222 165354372 -62170206 + MIR SINE MIR 70 216 -46 900 171 27 27 chr3 165354467 165354531 -62170047 - MLT1A1 LTR MaLR 0 365 303 321 26 0 0 chr3 165354531 165354569 -62170009 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 900 171 27 27 chr3 165354569 165354778 -62169800 - MLT1A1 LTR MaLR -62 303 1 472 339 84 9 chr3 165355280 165355507 -62169071 - MIR SINE MIR -14 248 5 352 339 31 42 chr3 165355549 165355741 -62168837 + MIR3 SINE MIR 12 201 -7 1879 171 24 19 chr3 165357682 165358051 -62166527 + THE1C LTR MaLR 1 371 -4 9739 118 43 8 chr3 165358057 165359582 -62164996 + THE1C-int LTR MaLR 3 1580 0 2066 154 11 19 chr3 165359584 165359960 -62164618 + THE1C LTR MaLR 3 375 0 23 54 0 0 chr3 165359990 165360027 -62164551 + AT_rich Low_complexity Low_complexity 1 37 0 23 68 0 0 chr3 165360738 165360782 -62163796 + AT_rich Low_complexity Low_complexity 1 44 0 218 297 22 44 chr3 165361347 165361438 -62163140 - MIR SINE MIR -110 152 64 30 77 0 0 chr3 165361732 165361797 -62162781 + AT_rich Low_complexity Low_complexity 1 65 0 4912 176 25 37 chr3 165361891 165362846 -62161732 + L1MA4 LINE L1 1239 2182 -4383 657 293 49 80 chr3 165362847 165363523 -62161055 - PABL_B LTR ERV1 -2 665 11 1803 161 24 0 chr3 165363586 165363878 -62160700 + AluSx SINE Alu 1 299 -13 3090 233 33 39 chr3 165363878 165364890 -62159688 + L1MA4 LINE L1 2194 3199 -4366 678 185 53 40 chr3 165365018 165365245 -62159333 + L1MA4 LINE L1 3268 3497 -4068 461 157 0 45 chr3 165365252 165365386 -62159192 + GA-rich Low_complexity Low_complexity 4 131 0 2511 234 45 3 chr3 165365403 165366119 -62158459 + L1MA4 LINE L1 3460 4205 -3360 2305 78 3 0 chr3 165366120 165366404 -62158174 - AluY SINE Alu -14 297 13 5838 200 20 10 chr3 165366545 165367832 -62156746 + L1MA4 LINE L1 4681 5980 -1585 1330 231 23 4 chr3 165367832 165368092 -62156486 - MER52A LTR ERV1 0 1755 1491 932 186 15 207 chr3 165368090 165368419 -62156159 - MER52A LTR ERV1 -428 861 603 * 4982 164 42 21 chr3 165368419 165370106 -62154472 + L1MA4 LINE L1 5995 7716 -3 324 267 8 58 chr3 165370145 165370265 -62154313 - MLT2E LTR ERVL -69 559 446 2006 233 114 6 chr3 165370278 165370799 -62153779 - MER90 LTR ERV1 0 614 3 448 309 93 36 chr3 165370821 165371015 -62153563 - MLT2E LTR ERVL -237 391 187 412 364 13 0 chr3 165371015 165371169 -62153409 - MIR SINE MIR -94 168 13 426 270 105 68 chr3 165371189 165371626 -62152952 + L1MC/D LINE L1 5373 5820 -406 28 71 0 0 chr3 165371986 165372042 -62152536 + AT_rich Low_complexity Low_complexity 1 56 0 183 175 32 16 chr3 165372592 165372655 -62151923 + (TA)n Simple_repeat Simple_repeat 1 64 0 216 200 0 0 chr3 165372698 165372748 -62151830 + (TA)n Simple_repeat Simple_repeat 1 50 0 1729 194 42 6 chr3 165372758 165373093 -62151485 - MER7A DNA MER2_type 0 346 2 22 0 0 0 chr3 165375072 165375094 -62149484 + AT_rich Low_complexity Low_complexity 1 22 0 186 43 0 0 chr3 165375234 165375257 -62149321 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 1751 118 98 0 chr3 165375260 165375515 -62149063 - AluSg SINE Alu -30 280 1 550 190 45 116 chr3 165375677 165375919 -62148659 - MER96B DNA MER1_type? 0 417 193 1977 191 91 24 chr3 165376004 165376161 -62148417 + MLT2B2 LTR ERVL 1 146 -369 4255 94 101 2 chr3 165376161 165376787 -62147791 + LTR12 LTR ERV1 1 688 0 1977 191 91 24 chr3 165376787 165377079 -62147499 + MLT2B2 LTR ERVL 146 480 -35 232 289 0 0 chr3 165377079 165377169 -62147409 + (TA)n Simple_repeat Simple_repeat 2 91 0 384 22 0 0 chr3 165377594 165377639 -62146939 + (TG)n Simple_repeat Simple_repeat 2 46 0 2431 76 0 0 chr3 165377656 165377959 -62146619 - AluY SINE Alu -8 303 1 200 211 0 0 chr3 165378366 165378404 -62146174 + (CATATA)n Simple_repeat Simple_repeat 4 41 0 216 242 45 30 chr3 165379606 165379672 -62144906 - MIR SINE MIR 0 262 196 327 289 24 66 chr3 165380186 165380352 -62144226 - MIR SINE MIR -92 170 12 1985 121 0 4 chr3 165380432 165380751 -62143827 - AluSq SINE Alu 0 320 3 25 51 0 0 chr3 165380833 165380872 -62143706 + AT_rich Low_complexity Low_complexity 1 39 0 390 308 7 53 chr3 165381719 165381905 -62142673 - MIR SINE MIR -65 143 16 441 270 16 87 chr3 165381931 165382116 -62142462 + MIR SINE MIR 14 185 -77 782 228 82 59 chr3 165382121 165382424 -62142154 - AluJo SINE Alu 0 312 3 21 36 0 0 chr3 165382493 165382521 -62142057 + AT_rich Low_complexity Low_complexity 1 28 0 282 310 52 17 chr3 165383467 165383583 -62140995 - MIR SINE MIR -119 143 24 300 188 69 7 chr3 165383749 165383915 -62140663 - LTR37B LTR ERV1 -3 423 271 29 47 0 0 chr3 165383915 165383958 -62140620 + AT_rich Low_complexity Low_complexity 1 43 0 1066 180 14 5 chr3 165383960 165384177 -62140401 - L1MA4 LINE L1 -14 6286 6068 26 74 0 0 chr3 165384396 165384450 -62140128 + AT_rich Low_complexity Low_complexity 1 54 0 229 236 28 0 chr3 165384709 165384781 -62139797 + A-rich Low_complexity Low_complexity 1 74 0 208 306 0 0 chr3 165385445 165385507 -62139071 + L2 LINE L2 2991 3052 -220 23 33 0 0 chr3 165385514 165385544 -62139034 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr3 165387470 165387508 -62137070 + AT_rich Low_complexity Low_complexity 1 38 0 25 40 0 20 chr3 165387657 165387695 -62136883 + AT_rich Low_complexity Low_complexity 1 39 -10 1882 110 33 7 chr3 165387695 165387996 -62136582 + L1PA10 LINE L1 5855 6163 -5 25 40 0 20 chr3 165387996 165388007 -62136571 + AT_rich Low_complexity Low_complexity 39 49 0 206 392 43 39 chr3 165388297 165388529 -62136049 - L2 LINE L2 -190 3082 2850 3031 142 16 0 chr3 165388802 165389302 -62135276 + L1PA16 LINE L1 5650 6157 -9 32 0 0 0 chr3 165389310 165389342 -62135236 + AT_rich Low_complexity Low_complexity 1 32 0 21 71 0 0 chr3 165389485 165389527 -62135051 + AT_rich Low_complexity Low_complexity 1 42 0 331 365 143 0 chr3 165390125 165390391 -62134187 + L2 LINE L2 3005 3308 -5 195 322 11 44 chr3 165390628 165390718 -62133860 - L2 LINE L2 -1 3271 3185 429 272 132 0 chr3 165390820 165391048 -62133530 + MER112 DNA MER1_type 1 258 -2 862 269 52 19 chr3 165391236 165391504 -62133074 + MLT1E1 LTR MaLR 1 277 -377 510 211 216 5 chr3 165391532 165391731 -62132847 + MLT1E1 LTR MaLR 377 617 -7 25 0 0 0 chr3 165391829 165391854 -62132724 + AT_rich Low_complexity Low_complexity 1 25 0 311 400 29 19 chr3 165393778 165393983 -62130595 + L2 LINE L2 2428 2634 -680 9932 164 21 58 chr3 165395354 165398128 -62126450 + L1P3 LINE L1 10 2786 -3675 6444 80 18 4 chr3 165398133 165399401 -62125177 + L1PA8 LINE L1 4889 6169 -3 49 42 0 31 chr3 165399473 165399569 -62125009 + AT_rich Low_complexity Low_complexity 1 93 0 1595 173 7 21 chr3 165399589 165399909 -62124669 + AluJb SINE Alu 5 320 0 2295 299 14 2 chr3 165399930 165400523 -62124055 + L1PA15 LINE L1 11 610 -6177 957 309 40 38 chr3 165400606 165401026 -62123552 + L1PA15 LINE L1 1170 1590 -5197 * 7133 209 54 8 chr3 165401017 165402887 -62121691 + L1PA15 LINE L1 4187 6142 -674 271 194 15 0 chr3 165403060 165403127 -62121451 - L1MC4 LINE L1 -1339 6703 6636 3525 175 4 30 chr3 165403129 165403712 -62120866 + L1PA15 LINE L1 6140 6704 -112 2533 118 0 27 chr3 165403712 165404086 -62120492 + THE1B LTR MaLR 1 364 0 3525 175 4 30 chr3 165404086 165404194 -62120384 + L1PA15 LINE L1 6704 6813 -3 264 91 0 0 chr3 165404208 165404252 -62120326 + (GGAA)n Simple_repeat Simple_repeat 1 44 0 508 58 26 79 chr3 165407612 165407802 -62116776 + (TA)n Simple_repeat Simple_repeat 1 180 0 275 283 0 0 chr3 165407984 165408044 -62116534 + MER89-int LTR ERV1 5266 5325 -1476 268 362 21 21 chr3 165408509 165408697 -62115881 + MER89-int LTR ERV1 6303 6490 -311 25714 143 12 16 chr3 165410462 165412971 -62111607 + L1PA8A LINE L1 123 2640 -3806 202 0 29 57 chr3 165412971 165413006 -62111572 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 25714 143 12 16 chr3 165413006 165416784 -62107794 + L1PA8A LINE L1 2640 6446 0 432 264 113 31 chr3 165417278 165417437 -62107141 - MER5B DNA MER1_type -6 172 1 2420 296 148 39 chr3 165417917 165419553 -62105025 + L2 LINE L2 145 1959 -1355 531 334 69 29 chr3 165419636 165419940 -62104638 - MLT1J2 LTR MaLR -126 324 9 651 304 82 36 chr3 165419943 165420330 -62104248 + L2 LINE L2 2787 3189 -124 30 45 0 0 chr3 165420371 165420415 -62104163 + AT_rich Low_complexity Low_complexity 1 44 0 2551 51 0 0 chr3 165421548 165421844 -62102734 - AluY SINE Alu -15 296 1 233 340 78 10 chr3 165422147 165422250 -62102328 + MIR SINE MIR 40 149 -113 505 373 28 16 chr3 165422351 165422670 -62101908 + MLT1I LTR MaLR 79 401 -8 2178 122 0 0 chr3 165422792 165423087 -62101491 + AluSx SINE Alu 1 295 -17 224 361 56 28 chr3 165424781 165424997 -62099581 + L2 LINE L2 2503 2724 -590 226 368 21 0 chr3 165425169 165425264 -62099314 - Charlie8 DNA MER1_type -2320 97 1 297 329 24 55 chr3 165425786 165425950 -62098628 + MIR SINE MIR 56 214 -48 266 229 0 29 chr3 165426578 165426648 -62097930 - MLT1K LTR MaLR -326 262 195 21 0 0 0 chr3 165426816 165426837 -62097741 + AT_rich Low_complexity Low_complexity 1 21 0 386 111 0 0 chr3 165426859 165426913 -62097665 - MER70A LTR ERVL 0 472 419 876 189 15 78 chr3 165426920 165427126 -62097452 - MER70-int LTR ERVL -2444 2579 2387 1880 179 22 7 chr3 165427161 165427626 -62096952 - MER70-int LTR ERVL -2751 2272 1770 21 0 0 0 chr3 165427669 165427690 -62096888 + AT_rich Low_complexity Low_complexity 1 21 0 2346 90 0 3 chr3 165427691 165427992 -62096586 + AluSq SINE Alu 1 300 -13 247 371 55 25 chr3 165430753 165430955 -62093623 - L2 LINE L2 -1206 2108 1901 331 214 87 19 chr3 165434425 165434528 -62090050 - L1MC4a LINE L1 -1927 5881 5772 382 332 69 14 chr3 165434598 165434815 -62089763 - L1MC4a LINE L1 -577 5585 5357 336 24 0 0 chr3 165435315 165435356 -62089222 + (CA)n Simple_repeat Simple_repeat 1 41 0 21 57 0 0 chr3 165435746 165435781 -62088797 + AT_rich Low_complexity Low_complexity 1 35 0 316 66 26 40 chr3 165435995 165436071 -62088507 + (TA)n Simple_repeat Simple_repeat 2 76 0 225 83 0 0 chr3 165436112 165436148 -62088430 + (TA)n Simple_repeat Simple_repeat 2 37 0 340 310 72 122 chr3 165437864 165438472 -62086106 - L2 LINE L2 -456 2858 2324 414 0 0 0 chr3 165438472 165438518 -62086060 + (CA)n Simple_repeat Simple_repeat 2 47 0 340 310 72 122 chr3 165438518 165438963 -62085615 - L2 LINE L2 -990 2324 1858 282 331 26 87 chr3 165439984 165440136 -62084442 - MIR SINE MIR -62 146 45 1351 240 51 78 chr3 165440931 165441365 -62083213 + MLT1E LTR MaLR 170 591 -2 22 0 0 0 chr3 165442043 165442065 -62082513 + AT_rich Low_complexity Low_complexity 1 22 0 333 259 26 26 chr3 165443186 165443302 -62081276 - L2 LINE L2 -279 3034 2919 436 308 8 0 chr3 165443738 165443858 -62080720 + MIR SINE MIR 31 151 -111 4104 130 28 117 chr3 165443859 165444762 -62079816 - LTR12 LTR ERV1 0 826 5 2251 187 34 46 chr3 165444778 165445389 -62079189 - pTR5 LTR ERV1 -1094 1344 741 291 282 0 0 chr3 165445413 165445491 -62079087 + MIR SINE MIR 175 252 -10 26 0 0 0 chr3 165445829 165445855 -62078723 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr3 165446225 165446253 -62078325 + AT_rich Low_complexity Low_complexity 1 28 0 266 295 11 0 chr3 165446362 165446457 -62078121 + L1ME LINE L1 5536 5631 -490 466 269 77 50 chr3 165446503 165446685 -62077893 - L1ME3A LINE L1 -28 6142 5956 222 303 34 45 chr3 165446708 165446797 -62077781 - MIR SINE MIR -172 90 3 288 270 49 112 chr3 165446941 165447226 -62077352 - L2 LINE L2 -10 3303 3037 519 324 121 14 chr3 165447361 165447642 -62076936 - L2 LINE L2 -573 2741 2431 5654 35 1 4 chr3 165448129 165448806 -62075772 + L1PA5 LINE L1 5478 6152 -2 472 216 189 7 chr3 165450681 165450834 -62073744 + MLT1A1 LTR MaLR 5 185 -189 5280 115 37 59 chr3 165450889 165452456 -62072122 - pTR5 LTR ERV1 0 2438 743 480 236 0 9 chr3 165452456 165452566 -62072012 + MLT1A1 LTR MaLR 250 358 -7 515 339 153 28 chr3 165453049 165453551 -62071027 + L3 LINE CR1 1007 1571 -6 1492 239 29 11 chr3 165454557 165454984 -62069594 - MER89 LTR ERV1 -25 534 1 1472 247 119 13 chr3 165455063 165455532 -62069046 + LTR40a LTR ERVL 1 519 0 2197 102 0 0 chr3 165460240 165460533 -62064045 - AluSc SINE Alu -16 293 1 14891 26 1 0 chr3 165460975 165463514 -62061064 + L1PA3 LINE L1 3614 6152 -3 1826 113 4 4 chr3 165463692 165463958 -62060620 + AluSc SINE Alu 29 294 -15 609 301 67 81 chr3 165464606 165465085 -62059493 + MLT1J LTR MaLR 37 508 -3 185 298 202 19 chr3 165465367 165465471 -62059107 + MIR SINE MIR 53 175 -87 24 0 0 0 chr3 165465518 165465542 -62059036 + AT_rich Low_complexity Low_complexity 1 24 0 28 0 0 0 chr3 165466430 165466458 -62058120 + AT_rich Low_complexity Low_complexity 1 28 0 401 93 28 37 chr3 165566987 165567094 -61957484 + (TA)n Simple_repeat Simple_repeat 2 107 0 226 411 23 36 chr3 165569403 165569622 -61954956 + L2 LINE L2 2971 3186 -86 2514 88 42 11 chr3 165569886 165570239 -61954339 - THE1B LTR MaLR 0 364 1 200 371 22 11 chr3 165570772 165570861 -61953717 - MIR SINE MIR -91 117 28 231 299 15 0 chr3 165572300 165572367 -61952211 + (TATATG)n Simple_repeat Simple_repeat 5 72 0 1215 271 25 0 chr3 165572421 165572816 -61951762 + L1MB8 LINE L1 4735 5139 -1007 938 182 98 19 chr3 165572820 165573034 -61951544 - L1MA9 LINE L1 -573 5739 5509 * 1449 191 69 12 chr3 165573020 165573063 -61951515 + L1MA9 LINE L1 5740 5779 -533 369 62 0 0 chr3 165573063 165573111 -61951467 + (CA)n Simple_repeat Simple_repeat 1 48 0 1449 191 69 12 chr3 165573111 165573499 -61951079 + L1MA9 LINE L1 5779 6292 -20 678 220 23 0 chr3 165573515 165573688 -61950890 + L1MB8 LINE L1 5129 5305 -841 2395 236 26 8 chr3 165573696 165574303 -61950275 + L1MB8 LINE L1 5560 6177 -1 1923 226 63 9 chr3 165575460 165575921 -61948657 - MER66B LTR ERV1 0 486 1 2124 152 20 0 chr3 165575922 165576265 -61948313 - MER66B-int LTR ERV1 0 6676 6327 934 147 80 0 chr3 165576236 165576399 -61948179 - MER66-int LTR ERV1 -1715 4961 4786 * 982 167 4 13 chr3 165576395 165576639 -61947939 - MER66-int LTR ERV1 -1635 6121 4608 21 36 0 0 chr3 165577684 165577712 -61946866 + AT_rich Low_complexity Low_complexity 1 28 0 201 250 0 0 chr3 165577937 165577973 -61946605 + L2 LINE L2 3201 3236 -36 25 51 0 0 chr3 165578285 165578324 -61946254 + AT_rich Low_complexity Low_complexity 1 39 0 1724 264 85 37 chr3 165578774 165579447 -61945131 - L1ME1 LINE L1 -4 6162 5458 1616 116 0 0 chr3 165579442 165579684 -61944894 - L1MA1 LINE L1 -330 5972 5731 * 1987 106 34 16 chr3 165579687 165580007 -61944571 + L1MA1 LINE L1 5970 6295 -7 544 231 84 25 chr3 165580029 165580305 -61944273 - L1ME1 LINE L1 -701 5465 5176 572 253 146 0 chr3 165583283 165583441 -61941137 + MER5A DNA MER1_type 9 189 0 1378 257 79 27 chr3 165584638 165585117 -61939461 - MLT1D LTR MaLR 0 505 2 2031 121 10 0 chr3 165585169 165585467 -61939111 - AluSp SINE Alu -12 301 1 687 299 122 30 chr3 165587242 165587717 -61936861 + L1MCc LINE L1 814 1332 -5091 493 226 151 0 chr3 165587733 165587879 -61936699 + L1MCc LINE L1 1441 1608 -5333 1067 274 41 27 chr3 165587883 165588655 -61935923 + L1MCc LINE L1 2602 3361 -3580 570 237 22 7 chr3 165588770 165588905 -61935673 + L1MC4a LINE L1 6405 6541 -1267 2136 121 3 3 chr3 165589026 165589339 -61935239 + AluSp SINE Alu 1 313 0 866 196 33 89 chr3 165589365 165589635 -61934943 - L1PA16 LINE L1 0 6166 5912 23 0 0 0 chr3 165590530 165590553 -61934025 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3 165591306 165591334 -61933244 + AT_rich Low_complexity Low_complexity 1 28 0 8436 188 20 17 chr3 165591362 165593624 -61930954 + L1M1 LINE L1 14 2947 -4618 7464 178 64 9 chr3 165594487 165596734 -61927844 - L1MA5 LINE L1 -338 6983 4598 234 0 0 0 chr3 165596742 165596768 -61927810 + (ATTG)n Simple_repeat Simple_repeat 2 27 0 649 193 0 8 chr3 165596770 165596889 -61927689 - AluSq/x SINE Alu -195 118 1 2264 250 42 7 chr3 165596949 165597632 -61926946 - L1MA5 LINE L1 -3265 3902 3196 868 202 0 49 chr3 165597645 165597828 -61926750 - AluJo SINE Alu -15 297 124 6153 53 1 1 chr3 165597828 165598595 -61925983 - L1PA5 LINE L1 -16 6138 5372 6687 239 36 36 chr3 165598671 165599473 -61925105 - L1MA5 LINE L1 -3956 3212 2412 372 59 0 0 chr3 165599473 165599524 -61925054 + (TG)n Simple_repeat Simple_repeat 2 52 0 6687 239 36 36 chr3 165599524 165602135 -61922443 - L1MA5 LINE L1 -4756 2412 6 201 342 19 62 chr3 165602252 165602413 -61922165 - L3 LINE CR1 -175 1402 1249 300 317 85 51 chr3 165602601 165602932 -61921646 - L3 LINE CR1 -615 962 621 693 181 62 0 chr3 165603168 165603328 -61921250 + L1MA8 LINE L1 6115 6284 -7 2317 88 0 0 chr3 165603637 165603942 -61920636 - AluY SINE Alu -6 305 1 23 0 0 0 chr3 165604047 165604070 -61920508 + AT_rich Low_complexity Low_complexity 1 23 0 38 39 0 0 chr3 165604427 165604479 -61920099 + AT_rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chr3 165604624 165604652 -61919926 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 165605142 165605163 -61919415 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 165605243 165605266 -61919312 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr3 165605369 165605398 -61919180 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr3 165607576 165607600 -61916978 + AT_rich Low_complexity Low_complexity 1 24 0 1890 142 3 3 chr3 165607606 165607914 -61916664 + AluSg SINE Alu 1 308 0 689 186 31 0 chr3 165608103 165608232 -61916346 - AluJb SINE Alu -17 295 163 2357 174 95 4 chr3 165608251 165609086 -61915492 + L1MA8 LINE L1 4850 5760 -531 674 44 11 0 chr3 165609088 165609178 -61915400 + (TAGA)n Simple_repeat Simple_repeat 2 92 0 1339 162 41 27 chr3 165609178 165609615 -61914963 + L1MA8 LINE L1 5799 6284 -7 335 311 0 0 chr3 165609634 165609724 -61914854 + L1MC4 LINE L1 6614 6703 -1339 280 300 83 42 chr3 165609806 165609926 -61914652 + L2 LINE L2 3146 3270 -2 1027 304 24 51 chr3 165609980 165610391 -61914187 + MLT1J2 LTR MaLR 1 400 -50 198 171 0 0 chr3 165610825 165610866 -61913712 + (TGAA)n Simple_repeat Simple_repeat 3 43 0 236 371 0 21 chr3 165610973 165611070 -61913508 - L2 LINE L2 -612 2702 2608 2156 78 47 3 chr3 165611936 165612232 -61912346 - AluY SINE Alu 0 311 3 21 36 0 0 chr3 165612332 165612360 -61912218 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 165612414 165612435 -61912143 + AT_rich Low_complexity Low_complexity 1 21 0 32 26 0 0 chr3 165612708 165612747 -61911831 + AT_rich Low_complexity Low_complexity 1 39 0 1624 258 99 31 chr3 165613051 165614487 -61910091 - Charlie7 DNA MER1_type -181 2431 845 253 375 115 0 chr3 165614627 165614880 -61909698 - Charlie7 DNA MER1_type -2194 418 137 191 36 36 0 chr3 165614908 165614936 -61909642 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 334 246 9 82 chr3 165615074 165615184 -61909394 + MER5A DNA MER1_type 63 164 -25 189 0 0 0 chr3 165616063 165616084 -61908494 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 5252 210 45 16 chr3 165617119 165618473 -61906105 + L1 LINE L1 2606 3999 -2147 22 70 0 0 chr3 165620471 165620514 -61904064 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr3 165621128 165621150 -61903428 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr3 165621510 165621539 -61903039 + AT_rich Low_complexity Low_complexity 1 29 0 383 228 11 11 chr3 165621806 165621898 -61902680 + MIR3 SINE MIR 81 172 -36 22 35 0 0 chr3 165621902 165621931 -61902647 + AT_rich Low_complexity Low_complexity 1 29 0 715 136 0 7 chr3 165622166 165622285 -61902293 - LTR12 LTR ERV1 0 714 172 308 288 17 0 chr3 165622285 165622403 -61902175 - LTR30 LTR ERV1 -79 643 524 1225 99 132 0 chr3 165622403 165622585 -61901993 - LTR12 LTR ERV1 -456 258 53 253 231 0 0 chr3 165622585 165622637 -61901941 - LTR30 LTR ERV1 -670 52 1 22 0 0 0 chr3 165622799 165622821 -61901757 + AT_rich Low_complexity Low_complexity 1 22 0 252 249 82 116 chr3 165623463 165623696 -61900882 - L1MC5 LINE L1 -32 7929 7705 464 232 83 70 chr3 165623849 165624090 -61900488 - L1MC5 LINE L1 -490 7471 7228 366 143 0 0 chr3 165624761 165624838 -61899740 + (TG)n Simple_repeat Simple_repeat 1 77 0 312 295 134 51 chr3 165624960 165625177 -61899401 - HAL1 LINE L1 -1160 1347 1113 524 254 58 54 chr3 165625453 165625658 -61898920 - LTR16A LTR ERVL -10 440 235 3059 178 15 5 chr3 165625669 165626265 -61898313 + L1MA4 LINE L1 5694 6295 -5 318 344 28 84 chr3 165626283 165626533 -61898045 - LTR16A LTR ERVL -214 236 1 742 325 83 11 chr3 165626861 165627224 -61897354 - MLT1I LTR MaLR -18 391 3 27 73 0 0 chr3 165628137 165628192 -61896386 + AT_rich Low_complexity Low_complexity 1 55 0 1603 117 35 9 chr3 165628261 165628491 -61896087 + AluSq SINE Alu 53 288 -25 25 0 0 0 chr3 165629380 165629405 -61895173 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr3 165630946 165630971 -61893607 + AT_rich Low_complexity Low_complexity 1 25 0 279 256 0 0 chr3 165631302 165631392 -61893186 + (TATG)n Simple_repeat Simple_repeat 3 92 0 * 305 162 15 0 chr3 165631391 165631459 -61893119 + GA-rich Low_complexity Low_complexity 2 70 0 311 380 58 10 chr3 165632665 165632873 -61891705 - MIR SINE MIR -14 248 31 1081 228 64 78 chr3 165633335 165633356 -61891222 + LTR52 LTR ERVL 1 21 -400 2239 101 0 7 chr3 165633356 165633664 -61890914 - AluSg1 SINE Alu -3 306 1 1081 228 64 78 chr3 165633664 165634063 -61890515 + LTR52 LTR ERVL 21 415 -6 476 323 169 39 chr3 165634304 165634660 -61889918 + L2 LINE L2 2871 3272 0 738 189 8 0 chr3 165635463 165635595 -61888983 - FLAM_C SINE Alu -10 133 1 25 31 0 0 chr3 165636232 165636264 -61888314 + AT_rich Low_complexity Low_complexity 1 32 0 1786 263 156 31 chr3 165638191 165640141 -61884437 - Charlie2a DNA MER1_type -508 2354 45 657 228 11 43 chr3 165640467 165640651 -61883927 + MER5B DNA MER1_type 1 178 0 340 207 54 0 chr3 165641123 165641234 -61883344 + (TA)n Simple_repeat Simple_repeat 1 117 0 5957 65 1 0 chr3 165641259 165642011 -61882567 - L1PA7 LINE L1 -6 6148 5396 343 70 0 0 chr3 165642011 165642054 -61882524 + 5S rRNA rRNA 50 92 -29 598 168 23 15 chr3 165642688 165642819 -61881759 - L1ME1 LINE L1 -4 6162 6031 2301 247 99 36 chr3 165642830 165644631 -61879947 - L1ME1 LINE L1 -249 5917 3967 180 0 0 0 chr3 165644631 165644651 -61879927 + (TAAA)n Simple_repeat Simple_repeat 3 22 0 2301 247 99 36 chr3 165644651 165644835 -61879743 - L1ME1 LINE L1 -2199 3967 3796 205 326 140 34 chr3 165644930 165645258 -61879320 - L2 LINE L2 -2463 851 489 2597 234 48 52 chr3 165645436 165645680 -61878898 - MER63C DNA MER1_type -140 920 677 2351 71 0 3 chr3 165645680 165645977 -61878601 - AluY SINE Alu -15 296 1 2597 234 48 52 chr3 165645977 165646644 -61877934 - MER63C DNA MER1_type -383 677 12 403 19 19 0 chr3 165646645 165646697 -61877881 - MLT2A1 LTR ERVL 0 444 392 7557 90 5 8 chr3 165646700 165647743 -61876835 - HERVL-A1 LTR ERVL -4548 1106 67 216 67 0 0 chr3 165647747 165647777 -61876801 + (TA)n Simple_repeat Simple_repeat 1 30 0 2921 64 3 20 chr3 165647778 165648168 -61876410 - MLT2A1 LTR ERVL -61 383 1 22 35 0 0 chr3 165648521 165648550 -61876028 + AT_rich Low_complexity Low_complexity 1 29 0 360 292 191 24 chr3 165649001 165649043 -61875535 + MIR SINE MIR 18 52 -210 1822 203 50 71 chr3 165649043 165649576 -61875002 - MER44D DNA MER2_type -1882 605 28 2221 104 0 16 chr3 165649576 165649884 -61874694 + AluSq SINE Alu 3 305 -8 1822 203 50 71 chr3 165649884 165649912 -61874666 - MER44D DNA MER2_type -2459 28 1 360 292 191 24 chr3 165649912 165650078 -61874500 + MIR SINE MIR 52 261 -1 21 36 0 0 chr3 165650250 165650278 -61874300 + AT_rich Low_complexity Low_complexity 1 28 0 1404 206 128 35 chr3 165651071 165651533 -61873045 + LTR22 LTR ERVK 1 505 -4 2384 79 0 0 chr3 165651890 165652194 -61872384 + AluY SINE Alu 1 304 -7 4851 111 34 31 chr3 165652414 165653186 -61871392 + MER4E LTR ERV1 1 774 -5 268 366 53 72 chr3 165653498 165653760 -61870818 + L2 LINE L2 2953 3209 -63 437 316 45 37 chr3 165653793 165654062 -61870516 + L2 LINE L2 2156 2426 -888 559 306 112 13 chr3 165654072 165654304 -61870274 + MIR SINE MIR 8 262 0 241 308 39 127 chr3 165654304 165654901 -61869677 + L2 LINE L2 2421 2964 -350 205 274 48 16 chr3 165655446 165655508 -61869070 + MIR SINE MIR 28 91 -171 180 247 39 78 chr3 165655876 165655953 -61868625 - MIR SINE MIR -188 74 1 333 98 43 22 chr3 165656144 165656236 -61868342 + (TA)n Simple_repeat Simple_repeat 1 94 0 26 50 0 0 chr3 165656251 165656291 -61868287 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr3 165656402 165656423 -61868155 + AT_rich Low_complexity Low_complexity 1 21 0 2264 152 72 5 chr3 165657554 165657955 -61866623 - MSTA LTR MaLR 0 428 1 2329 124 16 8 chr3 165657992 165658362 -61866216 - THE1C LTR MaLR -2 373 1 8785 137 39 51 chr3 165658362 165659961 -61864617 - THE1C-int LTR MaLR 0 1580 2 1566 147 60 7 chr3 165659962 165660269 -61864309 - THE1C LTR MaLR 0 355 1 23 0 0 0 chr3 165660370 165660393 -61864185 + AT_rich Low_complexity Low_complexity 1 23 0 505 87 0 0 chr3 165661225 165661294 -61863284 + THE1B LTR MaLR 1 69 -295 415 167 31 73 chr3 165661302 165661398 -61863180 - THE1C LTR MaLR -76 299 208 1883 170 61 29 chr3 165661398 165661774 -61862804 - MER61D LTR ERV1 0 501 114 2368 164 5 13 chr3 165661815 165662563 -61862015 - MER61D-int LTR ERV1 0 5217 4428 841 86 0 105 chr3 165662567 165662719 -61861859 - MER61D-int LTR ERV1 -1630 3587 3452 5596 135 9 20 chr3 165662720 165663689 -61860889 - MER61D-int LTR ERV1 -2276 2941 1983 2431 159 28 7 chr3 165663679 165664209 -61860369 - MER61D-int LTR ERV1 -3576 2010 1213 * 549 309 22 47 chr3 165664317 165664592 -61859986 - HUERS-P1 LTR ERV1 -3882 2381 2114 2412 87 3 0 chr3 165664755 165665065 -61859513 - AluY SINE Alu 0 311 1 10433 187 48 41 chr3 165665065 165668290 -61856288 - L1 LINE L1 -3633 3932 11 290 313 20 7 chr3 165669094 165669241 -61855337 + L1MEc LINE L1 39 187 -6209 2122 150 28 3 chr3 165669606 165669960 -61854618 + THE1B LTR MaLR 1 363 -1 656 110 26 11 chr3 165669960 165670065 -61854513 - HUERS-P3b LTR ERV1 -4152 1065 973 41934 37 23 1 chr3 165670075 165676080 -61848498 - L1PA3 LINE L1 0 6155 15 351 65 0 0 chr3 165676083 165676129 -61848449 - HUERS-P3b LTR ERV1 -4228 989 944 1817 174 9 56 chr3 165676129 165676977 -61847601 - HUERS-P3b LTR ERV1 -4377 2644 182 506 257 14 54 chr3 165677091 165677239 -61847339 - HUERS-P3b LTR ERV1 -5074 143 2 1874 180 67 30 chr3 165677239 165677640 -61846938 - MER61D LTR ERV1 0 501 86 1073 176 44 40 chr3 165677645 165677872 -61846706 - THE1C LTR MaLR -147 228 1 224 393 56 17 chr3 165678710 165678888 -61845690 - MIR SINE MIR -77 185 1 21 0 0 0 chr3 165679017 165679038 -61845540 + AT_rich Low_complexity Low_complexity 1 21 0 280 86 0 0 chr3 165679087 165679122 -61845456 - U2 snRNA snRNA -153 35 1 2075 88 51 10 chr3 165679423 165679717 -61844861 - AluSp SINE Alu -3 310 5 308 257 66 82 chr3 165679899 165680082 -61844496 + MIR SINE MIR 31 210 -52 2058 126 0 0 chr3 165680797 165681131 -61843447 + AluSx SINE Alu 1 334 0 22 35 0 0 chr3 165681182 165681211 -61843367 + AT_rich Low_complexity Low_complexity 1 29 0 457 294 79 51 chr3 165681234 165681448 -61843130 + MIR SINE MIR 9 228 -34 28 0 0 0 chr3 165681948 165681976 -61842602 + AT_rich Low_complexity Low_complexity 1 28 0 34 55 0 0 chr3 165682326 165682381 -61842197 + AT_rich Low_complexity Low_complexity 1 55 0 203 269 15 0 chr3 165682638 165682705 -61841873 + (TATATG)n Simple_repeat Simple_repeat 4 71 0 26 0 0 0 chr3 165682728 165682754 -61841824 + AT_rich Low_complexity Low_complexity 1 26 0 1277 212 57 20 chr3 165682840 165683137 -61841441 - MLT1A1 LTR MaLR -53 312 5 1227 267 63 67 chr3 165683213 165683708 -61840870 + L1M4b LINE L1 102 594 -6265 470 244 43 18 chr3 165683728 165683892 -61840686 + L1M4b LINE L1 784 951 -5908 1194 262 44 76 chr3 165684087 165684762 -61839816 + L1M4b LINE L1 2890 3521 -3436 * 1300 211 46 7 chr3 165684757 165685061 -61839517 + L1MD1 LINE L1 5927 6242 0 183 313 181 0 chr3 165685563 165685646 -61838932 + MIR SINE MIR 83 180 -82 336 358 23 29 chr3 165685787 165685960 -61838618 - MER5B DNA MER1_type 0 178 7 22 35 0 0 chr3 165686375 165686404 -61838174 + AT_rich Low_complexity Low_complexity 1 29 0 9062 201 35 48 chr3 165686507 165688859 -61835719 + Tigger5 DNA MER2_type 1 2323 0 348 176 0 0 chr3 165689215 165689283 -61835295 + CT-rich Low_complexity Low_complexity 3 70 0 198 208 0 0 chr3 165689750 165689798 -61834780 + (CA)n Simple_repeat Simple_repeat 1 48 0 1294 13 0 0 chr3 165689956 165690105 -61834473 - L1PA2 LINE L1 -1 6154 6006 218 69 0 0 chr3 165690111 165690140 -61834438 + (G)n Simple_repeat Simple_repeat 1 29 0 2022 210 55 20 chr3 165691016 165691474 -61833104 - MLT1D LTR MaLR -29 476 3 23 33 0 0 chr3 165691562 165691592 -61832986 + AT_rich Low_complexity Low_complexity 1 30 0 265 293 0 0 chr3 165693159 165693234 -61831344 + CT-rich Low_complexity Low_complexity 1 75 0 1381 277 62 58 chr3 165693759 165694383 -61830195 + L1MD2 LINE L1 5718 6344 -15 1976 116 7 3 chr3 165695828 165696142 -61828436 + AluSx SINE Alu 1 315 0 241 339 110 17 chr3 165696676 165696794 -61827784 + L2 LINE L2 3132 3260 -12 482 244 44 60 chr3 165696964 165697214 -61827364 + MER5C DNA MER1_type 73 318 -6 440 212 119 60 chr3 165697825 165697976 -61826602 - MER20 DNA MER1_type -7 212 53 283 103 0 103 chr3 165698653 165698721 -61825857 - L1MA3 LINE L1 0 6305 6245 3509 216 51 13 chr3 165699865 165701209 -61823369 - L1MA4A LINE L1 -26 6976 5530 3921 143 43 87 chr3 165701209 165702246 -61822332 - MER11C LTR ERVK 0 1071 1 9176 238 42 6 chr3 165702247 165704786 -61819792 - L1MA4A LINE L1 -1314 5534 2905 4930 218 33 5 chr3 165704830 165706034 -61818544 - L1MA4A LINE L1 -4473 2376 1130 1335 319 49 6 chr3 165706050 165706542 -61818036 - L1MA4A LINE L1 -6320 529 17 1953 126 4 0 chr3 165706609 165706906 -61817672 - AluSx SINE Alu 0 307 10 1094 259 12 0 chr3 165709282 165709553 -61815025 + AluJo SINE Alu 35 308 0 2140 222 71 7 chr3 165709740 165710321 -61814257 - L1MC3 LINE L1 0 7785 7168 1266 217 37 95 chr3 165710330 165711164 -61813414 + L1MCb LINE L1 762 1534 -4851 2108 183 47 14 chr3 165711804 165712185 -61812393 - L1MB3 LINE L1 0 6183 5781 222 37 0 0 chr3 165712185 165712212 -61812366 + (CA)n Simple_repeat Simple_repeat 2 28 0 2108 183 47 14 chr3 165712212 165712317 -61812261 - L1MB3 LINE L1 -402 5781 5681 210 37 0 0 chr3 165713372 165713399 -61811179 + (ATTG)n Simple_repeat Simple_repeat 2 28 0 1706 286 83 23 chr3 165713529 165714646 -61809932 - L1ME2 LINE L1 -1 6163 4972 973 282 128 31 chr3 165714760 165715788 -61808790 - L1ME2 LINE L1 -1369 4777 3650 1518 210 3 7 chr3 165715929 165716229 -61808349 - AluJo SINE Alu -13 299 1 202 254 17 0 chr3 165716236 165716295 -61808283 + T-rich Low_complexity Low_complexity 2 61 0 747 313 101 27 chr3 165716344 165716861 -61807717 + MLT1H1 LTR MaLR 1 555 0 804 258 129 28 chr3 165717934 165718322 -61806256 + MER50 LTR ERV1 10 436 -298 3648 130 87 35 chr3 165718348 165719647 -61804931 + pTR5 LTR ERV1 743 2438 0 1015 165 17 70 chr3 165719685 165719915 -61804663 + MER50 LTR ERV1 517 734 0 301 357 92 18 chr3 165719929 165720156 -61804422 + MIR SINE MIR 19 262 0 1910 135 20 0 chr3 165720700 165720997 -61803581 - AluSg SINE Alu -7 303 1 28 0 0 0 chr3 165721188 165721216 -61803362 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 165721704 165721726 -61802852 + AT_rich Low_complexity Low_complexity 1 22 0 776 301 81 57 chr3 165721861 165722369 -61802209 + MLT1G1 LTR MaLR 73 592 -3 1739 171 3 13 chr3 165722449 165722747 -61801831 - AluSx SINE Alu -17 295 1 27 29 0 0 chr3 165724912 165724946 -61799632 + AT_rich Low_complexity Low_complexity 1 34 0 244 345 119 11 chr3 165726092 165726269 -61798309 - L3 LINE CR1 -5 1572 1377 227 310 26 83 chr3 165726549 165726778 -61797800 - L3 LINE CR1 -217 1360 1145 1029 259 75 15 chr3 165726779 165727337 -61797241 + LTR48B LTR ERV1 1 644 0 1948 160 42 18 chr3 165727339 165727756 -61796822 + LTR48B-int LTR ERV1 1 1329 -4617 2326 215 18 30 chr3 165727762 165728318 -61796260 + LTR48B-int LTR ERV1 361 1614 -4649 311 213 20 120 chr3 165728310 165728460 -61796118 + LTR49-int LTR ERV1 1479 1613 -3267 * 388 200 0 12 chr3 165728465 165728550 -61796028 + LTR49-int LTR ERV1 1299 1382 -4949 1263 170 25 46 chr3 165728677 165728959 -61795619 + LTR49-int LTR ERV1 1374 1649 -4682 836 120 0 0 chr3 165728959 165729076 -61795502 + AluSg/x SINE Alu 177 293 -17 1629 129 15 26 chr3 165729218 165729490 -61795088 - THE1B LTR MaLR -95 269 1 10662 127 2 5 chr3 165729490 165731075 -61793503 - THE1B-int LTR MaLR 0 1580 1 2059 144 33 25 chr3 165731075 165731436 -61793142 - THE1B LTR MaLR 0 364 1 314 269 11 32 chr3 165731436 165731529 -61793049 + MIR SINE MIR 162 252 -10 5214 270 83 10 chr3 165733002 165734803 -61789775 + L1M4b LINE L1 11 1953 -4902 305 271 14 0 chr3 165734803 165734873 -61789705 - MIR3 SINE MIR -32 176 106 196 371 9 0 chr3 165735222 165735327 -61789251 + L2 LINE L2 2959 3064 -208 22 80 0 0 chr3 165737039 165737089 -61787489 + AT_rich Low_complexity Low_complexity 1 50 0 856 224 49 4 chr3 165738520 165738765 -61785813 - MER63 DNA MER1_type 0 1062 807 1872 189 6 0 chr3 165738766 165739098 -61785480 + MER57A LTR ERV1 3 336 -67 1051 269 77 39 chr3 165739098 165739592 -61784986 - LTR10D LTR ERV1 0 513 1 8501 261 44 26 chr3 165739595 165742154 -61782424 - HERVI LTR ERV1 -1 7784 5180 831 185 0 0 chr3 165742145 165742291 -61782287 - HERVI LTR ERV1 -7024 761 616 * 289 241 25 0 chr3 165742291 165742370 -61782208 - HERVI LTR ERV1 -6333 316 236 1199 186 16 12 chr3 165742469 165742727 -61781851 - HERVI LTR ERV1 -7525 260 2 1046 255 26 39 chr3 165742727 165743112 -61781466 - LTR10B LTR ERV1 0 547 120 396 299 0 0 chr3 165743283 165743380 -61781198 - MER63 DNA MER1_type -250 810 714 449 260 48 0 chr3 165743381 165743485 -61781093 + MER63 DNA MER1_type 2 736 -100 249 314 0 0 chr3 165743492 165743562 -61781016 + MER63 DNA MER1_type 993 1062 0 255 261 43 0 chr3 165743867 165743936 -61780642 + MER58 DNA MER1_type 2349 2420 0 207 273 0 0 chr3 165744617 165744683 -61779895 + (TA)n Simple_repeat Simple_repeat 2 67 0 21 57 0 0 chr3 165746361 165746396 -61778182 + AT_rich Low_complexity Low_complexity 1 35 0 923 230 41 116 chr3 165748574 165749256 -61775322 + L1M4 LINE L1 4264 4894 -1252 637 151 44 0 chr3 165749314 165749473 -61775105 + GA-rich Low_complexity Low_complexity 1 166 0 9804 227 43 43 chr3 165749478 165750533 -61774045 - L1P4 LINE L1 -697 5468 4414 234 62 0 0 chr3 165750533 165750565 -61774013 + (TG)n Simple_repeat Simple_repeat 2 33 0 9804 227 43 43 chr3 165750565 165752588 -61771990 - L1P4 LINE L1 -1751 4414 2386 4382 115 1 6 chr3 165752702 165753400 -61771178 - L1P LINE L1 -2294 3852 3158 * 5376 101 4 4 chr3 165753399 165754801 -61769777 + L1PA6 LINE L1 4658 6060 -94 773 233 103 23 chr3 165755022 165755237 -61769341 - MER6A DNA MER2_type -70 535 -2 279 260 40 10 chr3 165755257 165755357 -61769221 + MER6A DNA MER2_type 500 602 -3 1314 266 33 31 chr3 165755358 165755837 -61768741 - L1M1 LINE L1 -4462 3103 2652 284 319 71 11 chr3 165755868 165756134 -61768444 - L1M4 LINE L1 -1898 4248 3967 22 0 0 0 chr3 165757056 165757078 -61767500 + AT_rich Low_complexity Low_complexity 1 22 0 842 117 32 19 chr3 165757815 165757969 -61766609 + L1P4 LINE L1 5313 5468 -697 715 138 44 0 chr3 165757974 165758133 -61766445 + CT-rich Low_complexity Low_complexity 1 166 0 844 238 40 117 chr3 165758191 165758867 -61765711 - L1M4 LINE L1 -1252 4894 4271 221 208 56 0 chr3 165759686 165759758 -61764820 + T-rich Low_complexity Low_complexity 2 77 0 2066 112 3 7 chr3 165760663 165760958 -61763620 + AluSg SINE Alu 1 294 -16 437 123 27 0 chr3 165761006 165761079 -61763499 + AluJ/FLAM SINE Alu 1 75 -237 3614 191 31 26 chr3 165762312 165762884 -61761694 + MER72 LTR ERV1 1 578 -144 2938 201 85 13 chr3 165762884 165763569 -61761009 - MER50 LTR ERV1 0 734 1 3614 191 31 26 chr3 165763569 165763715 -61760863 + MER72 LTR ERV1 578 722 0 303 194 16 0 chr3 165763789 165763851 -61760727 - MLT1K LTR MaLR -12 576 514 22 0 0 0 chr3 165764676 165764698 -61759880 + AT_rich Low_complexity Low_complexity 1 22 0 187 329 26 53 chr3 165764839 165764915 -61759663 - MIR SINE MIR -170 92 19 22 0 0 0 chr3 165764970 165764992 -61759586 + AT_rich Low_complexity Low_complexity 1 22 0 280 311 0 11 chr3 165765710 165765800 -61758778 - MIR SINE MIR -122 140 52 1956 138 0 3 chr3 165767129 165767434 -61757144 - AluSx SINE Alu -8 304 1 492 252 48 17 chr3 165768430 165768660 -61755918 + L1MC3 LINE L1 4326 4562 -1584 2305 154 16 70 chr3 165768663 165769104 -61755474 - MSTB LTR MaLR -9 417 1 20728 183 30 11 chr3 165769200 165774940 -61749638 + L1M1 LINE L1 16 5871 -1694 377 290 142 7 chr3 165774936 165775091 -61749487 + L1MC3 LINE L1 5560 5738 -431 * 504 303 49 46 chr3 165775265 165775615 -61748963 + L1MC3 LINE L1 6087 6437 -1348 425 276 21 21 chr3 165775627 165775772 -61748806 + MLT1F1 LTR MaLR 1 145 -422 980 212 43 0 chr3 165775776 165776188 -61748390 + L1MD3 LINE L1 7439 7987 -8 888 272 82 36 chr3 165776188 165776831 -61747747 + L1ME1 LINE L1 5263 5967 -199 1694 223 27 25 chr3 165778131 165778534 -61746044 - MER63B DNA MER1_type -1 435 32 279 273 27 0 chr3 165778639 165778749 -61745829 + (TA)n Simple_repeat Simple_repeat 2 114 0 255 309 11 11 chr3 165778862 165778956 -61745622 + GA-rich Low_complexity Low_complexity 1 94 0 1695 141 60 0 chr3 165779505 165779788 -61744790 + AluSx SINE Alu 1 300 -12 957 197 66 74 chr3 165779932 165780332 -61744246 - MSTB1 LTR MaLR 0 432 1 21 36 0 0 chr3 165780472 165780500 -61744078 + AT_rich Low_complexity Low_complexity 1 28 0 1141 255 37 0 chr3 165780770 165781146 -61743432 - MER114 LTR ERV -212 436 47 386 221 26 0 chr3 165781149 165781225 -61743353 + Tigger5 DNA MER2_type 1 78 -2245 302 178 68 55 chr3 165781225 165781298 -61743280 - Tigger5 DNA MER2_type -3 2320 2247 420 185 0 0 chr3 165781298 165781363 -61743215 + Tigger5 DNA MER2_type 2259 2323 0 30 27 0 0 chr3 165781518 165781555 -61743023 + AT_rich Low_complexity Low_complexity 1 37 0 1060 219 32 15 chr3 165781686 165782026 -61742552 - L1MC3 LINE L1 -251 7534 7039 30 27 0 0 chr3 165782066 165782103 -61742475 + AT_rich Low_complexity Low_complexity 1 37 0 657 271 0 0 chr3 165782172 165782316 -61742262 + FRAM SINE Alu 2 145 -31 1764 251 79 25 chr3 165782457 165782798 -61741780 - L1MC3 LINE L1 -831 6954 6574 276 111 0 0 chr3 165782798 165782843 -61741735 + (TCTA)n Simple_repeat Simple_repeat 1 45 0 1764 251 79 25 chr3 165782843 165783019 -61741559 - L1MC3 LINE L1 -1211 6574 6409 279 273 91 0 chr3 165783013 165783123 -61741455 - L1MCa LINE L1 -6285 141 22 * 264 379 5 50 chr3 165783172 165783370 -61741208 + LTR16B LTR ERVL 28 216 -248 8258 184 57 40 chr3 165783388 165784314 -61740264 + L1MB3 LINE L1 19 928 -5456 1981 148 0 28 chr3 165784314 165784632 -61739946 + AluSx SINE Alu 1 309 -3 8258 184 57 40 chr3 165784632 165785658 -61738920 + L1MB3 LINE L1 928 2003 -4381 2025 243 30 37 chr3 165785661 165785709 -61738869 + L1 LINE L1 3943 3990 -2156 1887 120 57 0 chr3 165785709 165785992 -61738586 + AluSx SINE Alu 1 299 -13 2025 243 30 37 chr3 165785992 165786647 -61737931 + L1 LINE L1 3990 4641 -1505 727 181 28 51 chr3 165786791 165786968 -61737610 - MER2 DNA MER2_type -172 173 1 758 237 13 14 chr3 165786982 165787236 -61737342 + L1ME LINE L1 5254 5496 -666 317 351 38 14 chr3 165787403 165787614 -61736964 + L1 LINE L1 4215 4430 -1716 1742 167 0 22 chr3 165792116 165792428 -61732150 + AluJb SINE Alu 5 309 -3 1877 120 57 0 chr3 165793157 165793440 -61731138 + AluSx SINE Alu 1 299 -13 2399 218 30 28 chr3 165793441 165794096 -61730482 + L1MB3 LINE L1 4221 4877 -1505 747 175 28 51 chr3 165794240 165794417 -61730161 - MER2 DNA MER2_type -172 173 1 2617 192 19 42 chr3 165794431 165795050 -61729528 + L1MB3 LINE L1 5490 6094 -325 1341 116 58 6 chr3 165795052 165795595 -61728983 + L1MB3 LINE L1 6097 6905 0 335 330 62 16 chr3 165795842 165796036 -61728542 + LTR16B LTR ERVL 260 462 -2 25 0 0 0 chr3 165796302 165796327 -61728251 + AT_rich Low_complexity Low_complexity 1 25 0 1839 150 3 13 chr3 165796468 165796768 -61727810 - AluSx SINE Alu -15 297 1 219 36 0 0 chr3 165797515 165797543 -61727035 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 518 263 12 0 chr3 165797783 165797943 -61726635 + L1MA10 LINE L1 6169 6330 -4 3977 127 47 53 chr3 165798345 165799135 -61725443 + LTR1 LTR ERV1 1 785 0 24 85 0 0 chr3 165799477 165799536 -61725042 + AT_rich Low_complexity Low_complexity 1 59 0 604 337 92 31 chr3 165799647 165800101 -61724477 - L2 LINE L2 -618 2696 2215 296 359 35 7 chr3 165800147 165800292 -61724286 + MLT1I LTR MaLR 71 219 -190 2089 313 69 27 chr3 165800393 165801422 -61723156 - L2 LINE L2 -992 2322 1251 427 328 0 8 chr3 165801725 165801844 -61722734 - MLT1I LTR MaLR -189 220 103 763 353 116 29 chr3 165802157 165802681 -61721897 - L2 LINE L2 -2680 634 65 200 323 89 51 chr3 165802858 165803016 -61721562 - L2 LINE L2 -1183 2131 1968 180 0 0 0 chr3 165803039 165803059 -61721519 + (TG)n Simple_repeat Simple_repeat 2 21 0 230 116 23 0 chr3 165803186 165803229 -61721349 + (TAGA)n Simple_repeat Simple_repeat 1 44 0 290 247 108 21 chr3 165803231 165803324 -61721254 - L2 LINE L2 -26 3287 3187 23 0 0 0 chr3 165803459 165803482 -61721096 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr3 165804282 165804312 -61720266 + AT_rich Low_complexity Low_complexity 1 30 0 5311 144 14 8 chr3 165805731 165806904 -61717674 + L1PA12 LINE L1 4963 6149 -19 869 164 24 0 chr3 165807111 165807276 -61717302 + L1MA3 LINE L1 6123 6291 -14 271 313 103 56 chr3 165807849 165808044 -61716534 + MIR SINE MIR 1 204 -58 249 302 0 3 chr3 165808744 165808890 -61715688 + MLT1G1 LTR MaLR 3 190 -405 321 262 131 48 chr3 165808892 165809060 -61715518 + MLT1G1 LTR MaLR 361 595 0 335 115 49 0 chr3 165809247 165809308 -61715270 - L1MB3 LINE L1 -10 6173 6110 1894 133 0 41 chr3 165809338 165809632 -61714946 - AluSx SINE Alu -28 284 3 850 228 26 0 chr3 165809633 165809822 -61714756 - L1MB5 LINE L1 -55 7538 7345 414 0 0 0 chr3 165810375 165810421 -61714157 + (TA)n Simple_repeat Simple_repeat 2 47 0 21 0 0 0 chr3 165810421 165810442 -61714136 + AT_rich Low_complexity Low_complexity 1 21 0 2049 101 33 23 chr3 165810467 165810773 -61713805 + AluSq SINE Alu 3 311 -2 1465 108 62 4 chr3 165810779 165811019 -61713559 + L1PB1 LINE L1 5894 6147 -4 27 49 0 0 chr3 165811223 165811264 -61713314 + AT_rich Low_complexity Low_complexity 1 41 0 183 205 0 0 chr3 165811531 165811570 -61713008 + (TA)n Simple_repeat Simple_repeat 2 40 0 453 302 57 12 chr3 165812098 165812278 -61712300 + MIR SINE MIR 14 190 -66 567 158 68 75 chr3 165812753 165812886 -61711692 - FLAM_A SINE Alu 0 133 2 205 221 65 13 chr3 165812944 165813021 -61711557 + MIR3 SINE MIR 121 201 -7 4184 204 45 19 chr3 165813171 165814184 -61710394 - L1MC2 LINE L1 -23 6321 5275 4993 174 28 2 chr3 165814245 165815663 -61708915 + L1PB2 LINE L1 4639 6094 -57 * 12388 208 40 29 chr3 165815661 165817465 -61707113 - L1MB5 LINE L1 -547 7172 5389 1632 185 3 7 chr3 165817465 165817767 -61706811 + AluSx SINE Alu 1 301 -11 12388 208 40 29 chr3 165817767 165818594 -61705984 - L1MB5 LINE L1 -2330 5389 4572 183 80 0 0 chr3 165818594 165818619 -61705959 + (TTA)n Simple_repeat Simple_repeat 3 27 0 1936 117 18 0 chr3 165818622 165818905 -61705673 - AluSc SINE Alu -21 288 1 12388 208 40 29 chr3 165818905 165819880 -61704698 - L1MB5 LINE L1 -3148 4571 3520 198 118 0 0 chr3 165819880 165819914 -61704664 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 12388 208 40 29 chr3 165819914 165820208 -61704370 - L1MB5 LINE L1 -4199 3520 3231 820 233 103 23 chr3 165820303 165820518 -61704060 - MER6 DNA MER2_type -70 795 -2 279 260 40 10 chr3 165820538 165820638 -61703940 + MER6 DNA MER2_type 760 862 -3 1516 252 29 27 chr3 165820639 165821118 -61703460 - L1MB5 LINE L1 -4462 3103 2652 1813 273 65 8 chr3 165821149 165821783 -61702795 - L1MCa LINE L1 -1898 4528 3859 1937 247 91 13 chr3 165821783 165822909 -61701669 - L1MCa LINE L1 -3354 3072 1859 181 0 0 65 chr3 165824096 165824127 -61700451 + (TAA)n Simple_repeat Simple_repeat 1 29 0 492 234 112 100 chr3 165824491 165824812 -61699766 - MLT1J1 LTR MaLR -14 432 108 22 0 0 0 chr3 165826162 165826184 -61698394 + AT_rich Low_complexity Low_complexity 1 22 0 485 219 133 13 chr3 165826197 165826348 -61698230 - MER69A DNA AcHobo -7 170 2 223 301 226 0 chr3 165826356 165826449 -61698129 - MIR SINE MIR -125 137 24 2343 73 0 19 chr3 165828315 165828630 -61695948 - AluY SINE Alu -2 309 1 204 40 0 0 chr3 165829057 165829082 -61695496 + (TTTTG)n Simple_repeat Simple_repeat 4 28 0 1836 175 25 57 chr3 165829543 165829982 -61694596 - L1MA9 LINE L1 -9 6303 5879 198 0 0 0 chr3 165830059 165830081 -61694497 + (T)n Simple_repeat Simple_repeat 1 22 0 407 289 66 26 chr3 165830081 165830400 -61694178 + L1ME3 LINE L1 5299 5624 -546 614 282 80 71 chr3 165830402 165831098 -61693480 - MER52A LTR ERV1 0 1755 581 1117 100 0 0 chr3 165831102 165831262 -61693316 + AluY SINE Alu 144 303 -8 241 176 176 0 chr3 165831266 165831317 -61693261 - MER52A LTR ERV1 -895 860 801 664 258 17 11 chr3 165831345 165831523 -61693055 - LTR28 LTR ERV1 -841 179 1 914 247 116 45 chr3 165831523 165832008 -61692570 + L1ME3 LINE L1 5623 6141 -21 241 113 0 65 chr3 165832123 165832185 -61692393 + (TA)n Simple_repeat Simple_repeat 1 58 0 180 0 0 0 chr3 165832249 165832269 -61692309 + (TA)n Simple_repeat Simple_repeat 2 21 0 24 77 0 0 chr3 165832459 165832511 -61692067 + AT_rich Low_complexity Low_complexity 1 52 0 221 208 56 0 chr3 165833146 165833218 -61691360 + A-rich Low_complexity Low_complexity 2 77 0 21 0 0 0 chr3 165833795 165833816 -61690762 + AT_rich Low_complexity Low_complexity 1 21 0 501 303 88 0 chr3 165834542 165834780 -61689798 - L1MCa LINE L1 -2309 4117 3859 1957 247 91 13 chr3 165834780 165835906 -61688672 - L1MCa LINE L1 -3354 3072 1859 181 0 0 65 chr3 165837094 165837125 -61687453 + (TAA)n Simple_repeat Simple_repeat 1 29 0 486 234 112 100 chr3 165837489 165837810 -61686768 - MLT1J1 LTR MaLR -14 432 108 22 0 0 0 chr3 165839160 165839182 -61685396 + AT_rich Low_complexity Low_complexity 1 22 0 485 224 125 13 chr3 165839195 165839347 -61685231 - MER69A DNA AcHobo -7 170 2 223 301 226 0 chr3 165839355 165839448 -61685130 - MIR SINE MIR -125 137 24 2362 73 0 16 chr3 165841317 165841631 -61682947 - AluY SINE Alu -2 309 1 195 42 0 0 chr3 165842058 165842082 -61682496 + (TTTTG)n Simple_repeat Simple_repeat 5 28 0 2129 171 19 70 chr3 165842544 165843060 -61681518 - L1MA9 LINE L1 -9 6303 5814 252 309 62 52 chr3 165843088 165843395 -61681183 + L1ME LINE L1 5315 5624 -546 597 282 80 71 chr3 165843397 165844093 -61680485 - MER52A LTR ERV1 0 1755 581 1119 89 0 0 chr3 165844100 165844257 -61680321 + AluYa5 SINE Alu 147 303 -8 241 176 176 0 chr3 165844261 165844312 -61680266 - MER52A LTR ERV1 -895 860 801 664 258 17 11 chr3 165844340 165844518 -61680060 - LTR28 LTR ERV1 -841 179 1 599 207 23 40 chr3 165844518 165844692 -61679886 + L1ME LINE L1 5623 5793 -369 270 0 0 0 chr3 165844757 165844787 -61679791 + (TA)n Simple_repeat Simple_repeat 2 31 0 24 77 0 0 chr3 165844978 165845030 -61679548 + AT_rich Low_complexity Low_complexity 1 52 0 221 208 56 0 chr3 165845666 165845738 -61678840 + A-rich Low_complexity Low_complexity 2 77 0 22 0 0 0 chr3 165846984 165847006 -61677572 + AT_rich Low_complexity Low_complexity 1 22 0 212 294 37 0 chr3 165847391 165847500 -61677078 + (TA)n Simple_repeat Simple_repeat 2 114 0 296 283 9 9 chr3 165847727 165847840 -61676738 + HAL1b LINE L1 574 686 -662 24 67 0 0 chr3 165848863 165848908 -61675670 + AT_rich Low_complexity Low_complexity 1 45 0 261 333 175 22 chr3 165850301 165850484 -61674094 - MIR SINE MIR -46 216 6 2055 103 3 7 chr3 165852178 165852468 -61672110 + AluSg SINE Alu 1 289 -21 650 257 45 0 chr3 165852656 165852835 -61671743 - MER58A DNA MER1_type -1 223 37 244 271 79 21 chr3 165853365 165853505 -61671073 - L1MEc LINE L1 -6194 202 55 17630 160 78 116 chr3 165854326 165858106 -61666472 + L1M1 LINE L1 14 3936 -3629 2116 105 44 0 chr3 165858106 165858402 -61666176 + AluSc SINE Alu 1 309 0 17630 160 78 116 chr3 165858402 165858837 -61665741 + L1M1 LINE L1 3936 4386 -3179 827 101 0 42 chr3 165858837 165858956 -61665622 + AluSg/x SINE Alu 170 283 -27 17630 160 78 116 chr3 165858956 165861072 -61663506 + L1M1 LINE L1 4386 6232 -1333 22 70 0 0 chr3 165862797 165862840 -61661738 + AT_rich Low_complexity Low_complexity 1 43 0 21 57 0 0 chr3 165862904 165862939 -61661639 + AT_rich Low_complexity Low_complexity 1 35 0 925 299 99 48 chr3 165863793 165864228 -61660350 - MLT1G LTR MaLR -2 588 132 189 366 32 21 chr3 165864344 165864437 -61660141 - L2 LINE L2 -7 3265 3172 201 39 0 0 chr3 165864457 165864483 -61660095 + (TG)n Simple_repeat Simple_repeat 1 26 0 780 304 3 21 chr3 165864599 165864987 -61659591 - MLT1B LTR MaLR -2 388 17 252 0 0 0 chr3 165866478 165866506 -61658072 + (CA)n Simple_repeat Simple_repeat 2 29 0 2250 91 3 3 chr3 165866992 165867290 -61657288 - AluY SINE Alu -10 301 4 351 0 0 0 chr3 165867538 165867577 -61657001 + (CA)n Simple_repeat Simple_repeat 2 40 0 351 0 0 0 chr3 165867717 165867756 -61656822 + (TG)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr3 165868004 165868027 -61656551 + AT_rich Low_complexity Low_complexity 1 23 0 770 227 7 7 chr3 165868099 165868253 -61656325 - FRAM SINE Alu -12 154 1 32 43 0 0 chr3 165868260 165868306 -61656272 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr3 165868583 165868604 -61655974 + AT_rich Low_complexity Low_complexity 1 21 0 367 387 21 16 chr3 165869466 165869657 -61654921 - MER91A DNA MER1_type -1 195 4 976 232 11 0 chr3 165870058 165870243 -61654335 + MER5A DNA MER1_type 2 188 -1 21 36 0 0 chr3 165870483 165870511 -61654067 + AT_rich Low_complexity Low_complexity 1 28 0 233 306 76 11 chr3 165870675 165870792 -61653786 + MIR SINE MIR 36 160 -63 387 203 203 0 chr3 165872284 165872417 -61652161 + LTR50 LTR ERVL 611 770 -25 2227 110 0 0 chr3 165872503 165872802 -61651776 - AluSx SINE Alu -13 299 1 187 359 19 29 chr3 165873193 165873296 -61651282 - MIR SINE MIR -113 149 48 432 310 109 17 chr3 165873574 165873813 -61650765 + MIR SINE MIR 2 262 0 294 354 0 0 chr3 165874014 165874110 -61650468 - MIR SINE MIR -108 154 59 29 21 0 21 chr3 165874787 165874818 -61649760 + AT_rich Low_complexity Low_complexity 1 32 -14 25952 26 0 1 chr3 165874818 165878699 -61645879 - L1PA3 LINE L1 -3 6152 2274 29 21 0 21 chr3 165878699 165878714 -61645864 + AT_rich Low_complexity Low_complexity 32 46 0 2099 122 0 20 chr3 165878909 165879212 -61645366 - AluSx SINE Alu -13 299 3 374 293 69 82 chr3 165879295 165879459 -61645119 - HAL1b LINE L1 -815 533 368 1286 114 106 4 chr3 165879459 165879705 -61644873 + L1MA3 LINE L1 6035 6305 0 374 293 69 82 chr3 165879705 165879929 -61644649 - HAL1b LINE L1 -980 368 150 5640 98 52 8 chr3 165879937 165881542 -61643036 + L1PA12 LINE L1 4523 6168 0 382 356 68 0 chr3 165882300 165882463 -61642115 - MIR SINE MIR -53 209 36 25 0 0 0 chr3 165882942 165882967 -61641611 + AT_rich Low_complexity Low_complexity 1 25 0 181 269 221 29 chr3 165883600 165883704 -61640874 - L2 LINE L2 0 3313 3190 573 341 114 39 chr3 165884069 165884791 -61639787 - L2 LINE L2 -574 2740 1965 1005 129 10 27 chr3 165885076 165885263 -61639315 - L1PB1 LINE L1 -526 5625 5459 2701 93 8 20 chr3 165885263 165885661 -61638917 + L1PB1 LINE L1 5626 6018 -133 649 256 108 54 chr3 165885672 165886207 -61638371 + L1 LINE L1 3674 4237 -1909 * 990 277 144 11 chr3 165886202 165886646 -61637932 + L1ME3A LINE L1 5663 6165 -5 329 336 43 19 chr3 165886833 165887044 -61637534 + L1 LINE L1 4215 4430 -1716 858 136 0 0 chr3 165888314 165888439 -61636139 + AluSg/x SINE Alu 168 292 -20 23 68 0 0 chr3 165888466 165888510 -61636068 + AT_rich Low_complexity Low_complexity 1 44 0 243 331 31 69 chr3 165889670 165889800 -61634778 - MER5A DNA MER1_type -13 176 52 2373 80 0 3 chr3 165889802 165890103 -61634475 + AluY SINE Alu 1 300 -11 1017 166 47 5 chr3 165890803 165890996 -61633582 + L1MC1 LINE L1 6133 6333 0 2190 95 10 3 chr3 165891021 165891316 -61633262 + AluSg SINE Alu 1 297 -13 22 0 0 0 chr3 165891376 165891398 -61633180 + AT_rich Low_complexity Low_complexity 1 22 0 196 283 0 0 chr3 165891586 165891639 -61632939 + L2 LINE L2 350 402 -2912 27 0 0 0 chr3 165892376 165892403 -61632175 + AT_rich Low_complexity Low_complexity 1 27 0 6722 104 13 15 chr3 165892712 165893772 -61630806 - L1P LINE L1 -2854 3292 2235 * 9896 96 14 9 chr3 165893766 165895261 -61629317 - L1PA7 LINE L1 -1486 4660 3159 6783 72 0 1 chr3 165895261 165896753 -61627825 + L1PA7 LINE L1 4658 6151 -3 897 250 8 47 chr3 165896753 165897009 -61627569 + L1ME2 LINE L1 5885 6130 -34 21 57 0 0 chr3 165897148 165897183 -61627395 + AT_rich Low_complexity Low_complexity 1 35 0 4406 19 0 0 chr3 165897519 165897998 -61626580 - SVA Other Other 0 1386 908 7801 96 7 1 chr3 165898133 165899281 -61625297 + HERVL LTR ERVL 1406 2615 -3039 2214 124 0 28 chr3 165899290 165899646 -61624932 + HERVL LTR ERVL 3011 3356 -2298 1022 158 31 13 chr3 165899646 165899849 -61624729 + THE1B LTR MaLR 1 208 -167 682 96 0 0 chr3 165899823 165899917 -61624661 - MLT2A2 LTR ERVL -357 96 3 * 4419 88 2 3 chr3 165899919 165900521 -61624057 - HERVL-A2 LTR ERVL 0 5654 5054 1742 167 0 22 chr3 165902680 165902992 -61621586 + AluJb SINE Alu 5 309 -3 2250 110 0 0 chr3 165903721 165904020 -61620558 + AluSg SINE Alu 1 299 -11 1821 278 40 5 chr3 165904239 165904812 -61619766 - L1MC3 LINE L1 -710 7075 6483 34 0 0 0 chr3 165905734 165905768 -61618810 + AT_rich Low_complexity Low_complexity 1 34 0 3732 276 48 17 chr3 165906082 165907299 -61617279 - Charlie1 DNA MER1_type -947 1814 560 191 357 54 23 chr3 165907344 165907473 -61617105 + L2 LINE L2 2000 2132 -1182 1347 196 128 148 chr3 165907574 165908487 -61616091 + LTR28 LTR ERV1 5 1020 0 26 0 0 0 chr3 165908605 165908631 -61615947 + AT_rich Low_complexity Low_complexity 1 26 0 361 315 10 1 chr3 165908890 165909008 -61615570 + MLT1G LTR MaLR 3 124 -438 747 256 11 0 chr3 165909190 165909366 -61615212 + MLT1H1 LTR MaLR 378 555 0 22 56 0 0 chr3 165909679 165909715 -61614863 + AT_rich Low_complexity Low_complexity 1 36 0 216 0 0 0 chr3 165909809 165909833 -61614745 + (CA)n Simple_repeat Simple_repeat 1 24 0 1768 274 34 19 chr3 165910975 165911507 -61613071 + MLT1F LTR MaLR 1 540 -2 7540 29 0 1 chr3 165911507 165912639 -61611939 + L1PA4 LINE L1 5024 6152 -3 446 290 160 25 chr3 165912695 165912895 -61611683 + MIR SINE MIR 18 244 -18 25 51 0 0 chr3 165913903 165913942 -61610636 + AT_rich Low_complexity Low_complexity 1 39 0 204 158 0 0 chr3 165914447 165914485 -61610093 + (TA)n Simple_repeat Simple_repeat 1 38 0 22 0 0 0 chr3 165914609 165914631 -61609947 + AT_rich Low_complexity Low_complexity 1 22 0 233 227 23 0 chr3 165914896 165914984 -61609594 + GA-rich Low_complexity Low_complexity 4 93 0 25 0 0 0 chr3 165915169 165915194 -61609384 + AT_rich Low_complexity Low_complexity 1 25 0 324 0 0 0 chr3 165915812 165915848 -61608730 + (CA)n Simple_repeat Simple_repeat 2 37 0 201 115 39 19 chr3 165916170 165916222 -61608356 + (TATATG)n Simple_repeat Simple_repeat 4 56 0 225 65 0 0 chr3 165917339 165917370 -61607208 + (TG)n Simple_repeat Simple_repeat 2 32 0 181 294 20 0 chr3 165917468 165917519 -61607059 + L2 LINE L2 3261 3312 -1 22 56 0 0 chr3 165917784 165917820 -61606758 + AT_rich Low_complexity Low_complexity 1 36 0 1130 217 122 6 chr3 165918034 165918361 -61606217 + L1ME1 LINE L1 5654 6018 -148 870 230 10 34 chr3 165918744 165918953 -61605625 + Charlie1 DNA MER1_type 24 227 -2534 233 281 78 96 chr3 165919664 165919999 -61604579 + HAL1 LINE L1 1028 1356 -1151 197 111 0 0 chr3 165920375 165920402 -61604176 + MIR SINE MIR 119 145 -63 359 268 106 14 chr3 165920784 165920926 -61603652 - MLT1I LTR MaLR -2 407 253 226 250 0 0 chr3 165922359 165922417 -61602161 + (TG)n Simple_repeat Simple_repeat 1 58 -363 1559 84 196 66 chr3 165922417 165922749 -61601829 - THE1C LTR MaLR 0 375 1 226 250 0 0 chr3 165922749 165922780 -61601798 + (TG)n Simple_repeat Simple_repeat 57 421 0 315 267 215 15 chr3 165923194 165923329 -61601249 + L2 LINE L2 3095 3256 -57 226 211 0 0 chr3 165923957 165923995 -61600583 - MLT1J1 LTR MaLR -123 323 286 294 268 31 0 chr3 165924077 165924174 -61600404 - MLT1J2 LTR MaLR -282 168 69 434 18 18 0 chr3 165924440 165924495 -61600083 + (CA)n Simple_repeat Simple_repeat 1 56 0 980 207 80 70 chr3 165924713 165925099 -61599479 + MLT1B LTR MaLR 1 390 0 34 0 0 0 chr3 165925343 165925377 -61599201 + AT_rich Low_complexity Low_complexity 1 34 0 294 267 61 61 chr3 165926025 165926156 -61598422 - MLT1I LTR MaLR -2 407 277 276 251 44 6 chr3 165926147 165926236 -61598342 + MLT1H LTR MaLR 6 130 -419 * 1925 124 7 14 chr3 165926834 165927124 -61597454 + AluSq SINE Alu 3 290 -23 359 327 96 20 chr3 165927259 165927619 -61596959 + LTR33 LTR ERVL 49 451 -70 21 36 0 0 chr3 165928702 165928730 -61595848 + AT_rich Low_complexity Low_complexity 1 28 0 1743 303 79 11 chr3 165928781 165929580 -61594998 + L2 LINE L2 2201 3121 -192 198 255 39 0 chr3 165929629 165929680 -61594898 + L2 LINE L2 3261 3313 0 308 287 9 0 chr3 165929982 165930090 -61594488 - L1MEc LINE L1 -4109 2287 2179 23 33 0 0 chr3 165930710 165930740 -61593838 + AT_rich Low_complexity Low_complexity 1 30 0 1767 211 102 22 chr3 165931097 165931713 -61592865 - MER39 LTR ERV1 -5 702 2 1006 223 144 52 chr3 165931719 165932164 -61592414 + MER34C LTR ERV1 11 496 -89 10569 109 10 3 chr3 165932164 165933656 -61590922 + HERVL LTR ERVL 858 2359 -3295 306 0 0 0 chr3 165934099 165934133 -61590445 + (CA)n Simple_repeat Simple_repeat 1 34 0 22 35 0 0 chr3 165935407 165935436 -61589142 + AT_rich Low_complexity Low_complexity 1 29 0 2118 118 7 3 chr3 165936102 165936398 -61588180 - AluSx SINE Alu -13 299 3 3161 151 44 20 chr3 165936438 165937026 -61587552 - MER4B LTR ERV1 -8 602 1 4185 175 34 140 chr3 165937068 165938424 -61586154 - MER52A LTR ERV1 0 1755 475 421 275 135 13 chr3 165939348 165939577 -61585001 - L1M4 LINE L1 -1747 4399 4143 649 182 16 0 chr3 165939590 165939711 -61584867 - FLAM_C SINE Alu -16 127 5 2659 271 144 16 chr3 165939717 165941482 -61583096 - L1M4 LINE L1 -1993 4153 2164 * 8898 182 21 9 chr3 165941481 165942733 -61581845 + L1MA3 LINE L1 3455 4691 -1614 1367 216 24 3 chr3 165942733 165943024 -61581554 + AluJo SINE Alu 1 297 -15 201 74 0 0 chr3 165943024 165943051 -61581527 + (TA)n Simple_repeat Simple_repeat 2 28 0 8898 182 21 9 chr3 165943051 165944609 -61579969 + L1MA3 LINE L1 4690 6302 -3 294 315 71 22 chr3 165945280 165946009 -61578569 + L1MDa LINE L1 2449 3212 -3328 31 68 0 0 chr3 165946019 165946078 -61578500 + AT_rich Low_complexity Low_complexity 1 59 0 23 92 0 0 chr3 165946375 165946440 -61578138 + AT_rich Low_complexity Low_complexity 1 65 0 27 29 0 0 chr3 165947844 165947878 -61576700 + AT_rich Low_complexity Low_complexity 1 34 0 600 194 123 29 chr3 165948063 165948233 -61576345 - L1PA16 LINE L1 -9 6157 5972 1145 228 15 5 chr3 165948233 165948492 -61576086 - L1PA16 LINE L1 -81 6085 5813 279 79 0 0 chr3 165948779 165948817 -61575761 + (CA)n Simple_repeat Simple_repeat 1 38 0 181 219 73 49 chr3 165949820 165949902 -61574676 - L2 LINE L2 -98 3215 3132 259 356 74 48 chr3 165949992 165950371 -61574207 + L2 LINE L2 2587 2975 -339 1346 289 40 21 chr3 165952399 165952869 -61571709 - MLT1D LTR MaLR -24 481 3 185 0 40 0 chr3 165953390 165953415 -61571163 + (TAAAAA)n Simple_repeat Simple_repeat 3 28 0 325 280 78 21 chr3 165953595 165953838 -61570740 - L1M4 LINE L1 -900 6665 6409 23 33 0 0 chr3 165953934 165953964 -61570614 + AT_rich Low_complexity Low_complexity 1 30 0 1484 167 46 15 chr3 165953974 165954237 -61570341 - AluSg SINE Alu -13 297 27 1618 184 0 26 chr3 165954267 165954572 -61570006 - AluSg SINE Alu -12 298 2 880 219 25 0 chr3 165954745 165954941 -61569637 + Tigger1 DNA MER2_type 1 201 -2217 636 252 40 0 chr3 165954994 165955145 -61569433 + Tigger1 DNA MER2_type 187 343 -2075 346 224 0 0 chr3 165955157 165955233 -61569345 - L1M4 LINE L1 -1265 6300 6225 2488 158 55 20 chr3 165955333 165955879 -61568699 - L1M4 LINE L1 -1347 6218 5654 13120 194 29 16 chr3 165955913 165956681 -61567897 - L1PB3 LINE L1 -15 6855 6098 2307 76 3 22 chr3 165956681 165956995 -61567583 - AluY SINE Alu -3 308 1 13120 194 29 16 chr3 165956995 165958543 -61566035 - L1PB3 LINE L1 -772 6098 4571 2129 159 45 29 chr3 165958543 165958964 -61565614 + MSTA LTR MaLR 1 428 0 13120 194 29 16 chr3 165958964 165960801 -61563777 - L1PB3 LINE L1 -2299 4571 2632 1459 184 13 91 chr3 165960803 165961200 -61563378 - L1M4 LINE L1 -1923 5642 5277 3497 85 12 2 chr3 165961200 165961680 -61562898 - LTR15 LTR ERV1 -8 485 1 6426 237 67 12 chr3 165961682 165964076 -61560502 - L1M4 LINE L1 -2281 5284 2750 3062 137 28 18 chr3 165964079 165964422 -61560156 - MER84 LTR ERVI -4 503 152 2544 53 0 3 chr3 165964422 165964724 -61559854 + AluY SINE Alu 3 303 -8 3062 137 28 18 chr3 165964724 165964878 -61559700 - MER84 LTR ERVI -355 152 1 1960 253 66 1 chr3 165964886 165965583 -61558995 - L1M4 LINE L1 -4815 2750 2009 2649 68 100 5 chr3 165966138 165966547 -61558031 - LTR7 LTR ERV1 -2 448 1 2185 106 76 11 chr3 165966547 165966915 -61557663 - HERVH LTR ERV1 0 7713 7322 1379 134 19 0 chr3 165966913 165967129 -61557449 - HERVH LTR ERV1 -1894 5819 5600 * 4378 140 1 1 chr3 165967133 165967792 -61556786 - HERVH LTR ERV1 -2567 5146 4488 3321 105 16 6 chr3 165967794 165968291 -61556287 - HERVH LTR ERV1 -3720 3993 3492 * 19238 115 62 13 chr3 165968281 165971420 -61553158 - HERVH LTR ERV1 -4423 3290 1 2550 90 98 5 chr3 165971422 165971832 -61552746 - LTR7 LTR ERV1 -2 448 1 10725 241 47 46 chr3 165972723 165973584 -61550994 - L1MA9 LINE L1 -1 6199 5340 2157 95 3 16 chr3 165973584 165973888 -61550690 - AluSg SINE Alu -10 300 1 10725 241 47 46 chr3 165973888 165975078 -61549500 - L1MA9 LINE L1 -860 5340 4153 2047 97 12 56 chr3 165975078 165975398 -61549180 - AluY SINE Alu -5 306 1 10725 241 47 46 chr3 165975398 165980099 -61544479 - L1MA9 LINE L1 -2047 4153 1 234 314 162 16 chr3 165980320 165980511 -61544067 + MIR SINE MIR 31 249 -13 201 39 0 0 chr3 165980725 165980751 -61543827 + (CA)n Simple_repeat Simple_repeat 1 26 0 266 225 50 0 chr3 165980761 165980844 -61543734 - MER33 DNA MER1_type -261 63 1 377 358 122 17 chr3 165980934 165981278 -61543300 + L2 LINE L2 1281 1660 -1654 304 275 30 92 chr3 165981255 165981386 -61543192 + L2 LINE L2 3169 3291 -22 * 345 24 0 0 chr3 165981600 165981642 -61542936 + (TCTA)n Simple_repeat Simple_repeat 1 42 0 323 299 71 46 chr3 165981887 165982084 -61542494 + MIR SINE MIR 5 206 -56 1447 138 46 0 chr3 165982103 165982342 -61542236 - MER47A DNA MER2_type -78 288 39 28 48 0 0 chr3 165982550 165982592 -61541986 + AT_rich Low_complexity Low_complexity 1 42 0 21 71 0 0 chr3 165983027 165983069 -61541509 + AT_rich Low_complexity Low_complexity 1 42 0 348 317 46 68 chr3 165983715 165984040 -61540538 + HAL1 LINE L1 1 318 -2189 1052 174 0 0 chr3 165984061 165984228 -61540350 + AluSg/x SINE Alu 137 303 -9 390 183 135 32 chr3 165984228 165984354 -61540224 + MER53 DNA DNA 32 170 -19 320 211 81 49 chr3 165984259 165984382 -61540196 - MER53 DNA DNA -61 128 2 * 885 287 72 94 chr3 165984424 165985809 -61538769 + HAL1 LINE L1 340 1693 -814 24 0 0 0 chr3 165986028 165986052 -61538526 + AT_rich Low_complexity Low_complexity 1 24 0 419 267 12 79 chr3 165987325 165987490 -61537088 - L2 LINE L2 -4 3309 3156 3744 185 29 6 chr3 165987513 165988204 -61536374 - MER50 LTR ERV1 -11 723 17 14674 146 25 16 chr3 165988216 165990648 -61533930 - MER50-int LTR ERV1 0 7205 4752 893 122 28 33 chr3 165990648 165990738 -61533840 - MER83B-int LTR ERV1 -2444 3502 3413 7469 25 7 8 chr3 165990738 165991912 -61532666 + L1PA5 LINE L1 4977 6148 -6 893 122 28 33 chr3 165991912 165992001 -61532577 - MER83B-int LTR ERV1 -2533 3413 3324 866 149 26 22 chr3 165992002 165992214 -61532364 - MER83B-int LTR ERV1 -998 3882 3550 370 123 231 0 chr3 165992211 165992276 -61532302 - MER83B-int LTR ERV1 -3393 1487 1408 * 914 195 36 5 chr3 165992270 165992464 -61532114 - MER83B-int LTR ERV1 -3713 2984 1003 * 6578 157 22 17 chr3 165992460 165994221 -61530357 - MER83B-int LTR ERV1 -5356 1849 1 2920 158 47 2 chr3 165994251 165994758 -61529820 - MER50 LTR ERV1 -204 530 1 300 369 39 26 chr3 165995172 165995346 -61529232 + MER5A DNA MER1_type 2 188 -1 234 228 123 0 chr3 165995499 165995556 -61529022 + MER69 DNA AcHobo 12 75 -2451 204 294 15 29 chr3 165996407 165996475 -61528103 + L2 LINE L2 3247 3313 0 974 307 112 5 chr3 165997449 165998076 -61526502 + L1ME3A LINE L1 5294 5975 -189 1765 242 49 20 chr3 165998972 165999566 -61525012 - L1M4 LINE L1 -1949 4197 3587 21 36 0 0 chr3 166000154 166000182 -61524396 + AT_rich Low_complexity Low_complexity 1 28 0 3547 231 45 18 chr3 166001238 166002114 -61522464 + L1MA4 LINE L1 16 914 -6651 * 12419 198 25 17 chr3 166002112 166006774 -61517804 + L1MA4 LINE L1 3001 7714 -5 247 310 78 35 chr3 166008077 166008219 -61516359 - MIR SINE MIR -31 231 84 22 88 0 0 chr3 166008623 166008680 -61515898 + AT_rich Low_complexity Low_complexity 1 57 0 24 53 0 0 chr3 166008714 166008752 -61515826 + AT_rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr3 166008852 166008876 -61515702 + AT_rich Low_complexity Low_complexity 1 24 0 899 227 36 9 chr3 166008976 166009196 -61515382 + L1MCa LINE L1 34 259 -6167 * 2727 191 49 11 chr3 166009194 166009852 -61514726 + L1MCa LINE L1 790 1472 -4954 * 4628 259 74 14 chr3 166009841 166011748 -61512830 + L1MCa LINE L1 2268 4325 -2101 1114 246 86 70 chr3 166011747 166011932 -61512646 - L1M1 LINE L1 -3932 3633 3452 * 213 39 0 0 chr3 166011932 166011958 -61512620 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1114 246 86 70 chr3 166011958 166011997 -61512581 - L1M1 LINE L1 -4113 3452 3415 2323 125 3 3 chr3 166011997 166012357 -61512221 - L1PA14 LINE L1 -7 6154 5795 1114 246 86 70 chr3 166012357 166012875 -61511703 - L1M1 LINE L1 -4150 3415 2878 21 71 0 0 chr3 166013536 166013578 -61511000 + AT_rich Low_complexity Low_complexity 1 42 0 2108 137 0 0 chr3 166014097 166014389 -61510189 - AluSx SINE Alu -20 292 1 189 379 90 9 chr3 166014427 166014638 -61509940 + L2 LINE L2 659 886 -2428 402 147 0 0 chr3 166014909 166014977 -61509601 + (GGAGAA)n Simple_repeat Simple_repeat 3 70 0 407 298 173 44 chr3 166015031 166015441 -61509137 + L2 LINE L2 1296 1758 -1556 232 308 121 27 chr3 166015735 166015959 -61508619 - L1ME LINE L1 -202 5919 5675 817 242 69 104 chr3 166016069 166016519 -61508059 + MLT1C LTR MaLR 1 434 -33 2174 124 0 3 chr3 166016520 166016834 -61507744 - AluSq SINE Alu 0 313 1 468 290 91 0 chr3 166017018 166017204 -61507374 - L1MC4 LINE L1 -31 8011 7809 329 227 0 49 chr3 166017197 166017320 -61507258 - L1MC4 LINE L1 -328 7667 7477 * 259 195 18 0 chr3 166017886 166017999 -61506579 + (TA)n Simple_repeat Simple_repeat 2 116 0 271 327 47 59 chr3 166018160 166018436 -61506142 + L2 LINE L2 2794 3076 -237 195 42 0 0 chr3 166018439 166018463 -61506115 + (CA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr3 166019623 166019647 -61504931 + AT_rich Low_complexity Low_complexity 1 24 0 6777 183 26 15 chr3 166020299 166021398 -61503180 - L1 LINE L1 -1252 6313 5193 1198 219 67 21 chr3 166021398 166021681 -61502897 - AluJo SINE Alu -6 296 1 6777 183 26 15 chr3 166021681 166022031 -61502547 - L1 LINE L1 -2372 5193 4848 5205 206 15 7 chr3 166022018 166023595 -61500983 + L1PA15 LINE L1 4574 6165 0 * 3373 250 38 23 chr3 166023618 166024002 -61500576 - L1 LINE L1 -3158 4407 4030 216 0 0 0 chr3 166024002 166024026 -61500552 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 3373 250 38 23 chr3 166024026 166025167 -61499411 - L1 LINE L1 -3535 4030 2907 306 73 0 0 chr3 166025167 166025208 -61499370 + (TG)n Simple_repeat Simple_repeat 1 41 0 3373 250 38 23 chr3 166025208 166025377 -61499201 - L1 LINE L1 -4658 2907 2742 744 254 49 5 chr3 166025377 166025601 -61498977 + MER46A DNA MER2_type 3 236 0 3373 250 38 23 chr3 166025601 166026025 -61498553 - L1 LINE L1 -4823 2742 2262 234 149 106 0 chr3 166026025 166026072 -61498506 - L1 LINE L1 -5135 2354 2303 2036 237 21 64 chr3 166026126 166026708 -61497870 - L1 LINE L1 -6462 1027 471 22 56 0 0 chr3 166027068 166027104 -61497474 + AT_rich Low_complexity Low_complexity 1 36 0 3300 108 2 0 chr3 166027656 166028108 -61496470 + MLT2A2 LTR ERVL 1 453 0 29 90 0 0 chr3 166028287 166028365 -61496213 + AT_rich Low_complexity Low_complexity 1 78 0 6913 123 19 3 chr3 166028469 166030324 -61494254 - L1PA8A LINE L1 -4 6442 4560 7793 172 9 21 chr3 166030324 166031578 -61493000 - L1PA8A LINE L1 -3931 2530 1254 216 67 0 0 chr3 166031578 166031608 -61492970 + (TTG)n Simple_repeat Simple_repeat 1 30 0 7793 172 9 21 chr3 166031608 166032845 -61491733 - L1PA8A LINE L1 -5207 1254 4 2223 98 3 7 chr3 166033795 166034102 -61490476 + AluSq SINE Alu 1 306 -7 699 254 9 77 chr3 166034467 166034687 -61489891 + MER63A DNA MER1_type 6 210 0 660 315 143 22 chr3 166034711 166035250 -61489328 - L2 LINE L2 -1 3312 2717 445 240 74 2 chr3 166035319 166035500 -61489078 + L1ME1 LINE L1 5203 5406 -745 734 220 44 6 chr3 166035572 166035757 -61488821 + L1ME1 LINE L1 5609 5797 -369 681 282 56 5 chr3 166035781 166035997 -61488581 + L1ME1 LINE L1 5940 6166 0 2022 121 0 7 chr3 166036600 166036909 -61487669 + AluSc SINE Alu 1 307 0 24 53 0 0 chr3 166037098 166037136 -61487442 + AT_rich Low_complexity Low_complexity 1 38 0 1520 335 120 30 chr3 166037474 166037778 -61486800 + ERVL LTR ERVL 3057 3332 -2432 2187 102 7 3 chr3 166037778 166038081 -61486497 + AluSc SINE Alu 1 304 -5 1520 335 120 30 chr3 166038081 166039234 -61485344 + ERVL LTR ERVL 3332 4686 -1078 235 352 0 0 chr3 166039629 166039720 -61484858 - MLT1J2 LTR MaLR -275 175 85 276 30 0 0 chr3 166039720 166039753 -61484825 + (A)n Simple_repeat Simple_repeat 1 33 0 364 352 97 9 chr3 166039832 166040059 -61484519 + ERVL LTR ERVL 4909 5155 -609 23 68 0 0 chr3 166040287 166040331 -61484247 + AT_rich Low_complexity Low_complexity 1 44 0 767 356 62 22 chr3 166040727 166041177 -61483401 + LTR67 LTR ERVL 90 557 0 413 36 0 18 chr3 166041995 166042051 -61482527 + (TG)n Simple_repeat Simple_repeat 2 56 0 23 0 0 0 chr3 166042672 166042695 -61481883 + AT_rich Low_complexity Low_complexity 1 23 0 27 73 0 0 chr3 166042931 166042986 -61481592 + AT_rich Low_complexity Low_complexity 1 55 0 25 105 0 0 chr3 166043571 166043666 -61480912 + AT_rich Low_complexity Low_complexity 1 95 0 531 279 12 60 chr3 166043679 166043930 -61480648 - L1ME2 LINE L1 -42 6382 6144 462 202 0 51 chr3 166043958 166044106 -61480472 - L1ME2 LINE L1 -762 5668 5529 834 191 35 10 chr3 166044253 166044452 -61480126 - L1MD1 LINE L1 0 6242 6039 1374 291 72 23 chr3 166044452 166045197 -61479381 - L1ME2 LINE L1 -1742 4664 3883 * 2471 234 63 12 chr3 166045195 166045942 -61478636 + L1M4 LINE L1 4309 5093 -1053 1927 138 10 13 chr3 166045942 166046281 -61478297 - AluSx SINE Alu 0 338 1 894 218 81 50 chr3 166046300 166046718 -61477860 - L1ME2 LINE L1 -2959 3447 3017 * 2759 243 56 24 chr3 166046693 166048049 -61476529 - L1ME2 LINE L1 -4368 2038 652 1791 204 33 30 chr3 166048059 166048609 -61475969 + MLT2A2 LTR ERVL 1 549 -5 880 267 50 47 chr3 166048686 166049285 -61475293 - L1M4 LINE L1 -964 5182 4582 1052 214 22 5 chr3 166049306 166049530 -61475048 + MLT1C LTR MaLR 1 228 -239 642 154 9 9 chr3 166049536 166049646 -61474932 + MLT1C LTR MaLR 357 466 -1 612 272 40 32 chr3 166049650 166050273 -61474305 - L1M4 LINE L1 -1584 4562 3864 861 301 40 6 chr3 166051254 166051576 -61473002 + LTR16A LTR ERVL 116 448 -2 212 83 0 28 chr3 166051628 166051664 -61472914 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2276 87 3 0 chr3 166051667 166051953 -61472625 - AluSp SINE Alu -26 287 1 1830 187 16 40 chr3 166052908 166053282 -61471296 + MLT1A1 LTR MaLR 1 365 0 27 29 0 0 chr3 166053504 166053538 -61471040 + AT_rich Low_complexity Low_complexity 1 34 0 511 299 101 28 chr3 166054695 166055073 -61469505 - LTR16A1 LTR ERVL -3 476 73 201 229 43 0 chr3 166056862 166056932 -61467646 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 * 216 221 13 13 chr3 166056880 166056957 -61467621 + (TA)n Simple_repeat Simple_repeat 1 77 0 336 304 59 37 chr3 166057392 166057658 -61466920 - L1M4 LINE L1 -1826 4320 4047 286 323 53 11 chr3 166057711 166057900 -61466678 - L1M4 LINE L1 -2177 3969 3773 209 156 44 0 chr3 166058153 166058198 -61466380 + (CA)n Simple_repeat Simple_repeat 1 47 0 222 156 0 0 chr3 166059086 166059131 -61465447 + T-rich Low_complexity Low_complexity 2 46 0 670 154 7 84 chr3 166059687 166059830 -61464748 - FLAM_A SINE Alu 0 133 2 189 0 0 0 chr3 166059996 166060017 -61464561 + (A)n Simple_repeat Simple_repeat 1 21 0 949 273 134 38 chr3 166060047 166060543 -61464035 - MLT1G3 LTR MaLR -49 504 2 26 0 0 0 chr3 166060998 166061024 -61463554 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr3 166061193 166061221 -61463357 + AT_rich Low_complexity Low_complexity 1 28 0 387 252 76 8 chr3 166061440 166061559 -61463019 + HsTC2 DNA Tc2 1283 1585 -313 1183 274 42 65 chr3 166061669 166062333 -61462245 + L1ME3A LINE L1 4906 5547 -623 2201 88 3 7 chr3 166062333 166062638 -61461940 + AluY SINE Alu 1 304 -7 1183 274 42 65 chr3 166062638 166063077 -61461501 + L1ME3A LINE L1 5547 5994 -176 1053 207 51 133 chr3 166063315 166063865 -61460713 + MLT1D LTR MaLR 1 505 0 2346 49 0 3 chr3 166064727 166065014 -61459564 + AluY SINE Alu 15 300 -11 3314 76 2 4 chr3 166065197 166065658 -61458920 - L1PA13 LINE L1 -5 6158 5699 29 0 0 0 chr3 166066191 166066220 -61458358 + AT_rich Low_complexity Low_complexity 1 29 0 234 292 11 11 chr3 166067597 166067686 -61456892 + (TA)n Simple_repeat Simple_repeat 2 90 0 2275 105 0 6 chr3 166068384 166068699 -61455879 + AluSq SINE Alu 1 313 0 3002 191 26 24 chr3 166069018 166069673 -61454905 + L1MC1 LINE L1 5677 6332 -1 491 215 0 0 chr3 166069813 166069906 -61454672 + MLT2C2 LTR ERVL 1 93 -371 1474 183 3 0 chr3 166069919 166070204 -61454374 - L1MA6 LINE L1 0 6300 6015 4890 234 42 33 chr3 166070204 166073086 -61451492 - L1 LINE L1 -2677 4888 2095 673 327 44 42 chr3 166073373 166073825 -61450753 - L1 LINE L1 -5827 1669 1217 587 257 68 20 chr3 166073945 166074185 -61450393 - MLT2F LTR ERVL -109 554 135 * 1129 220 78 68 chr3 166074179 166074496 -61450082 + MLT2C2 LTR ERVL 76 399 -65 297 0 0 0 chr3 166074496 166074529 -61450049 + (TG)n Simple_repeat Simple_repeat 1 33 0 1129 220 78 68 chr3 166074529 166074593 -61449985 + MLT2C2 LTR ERVL 399 461 -3 1438 249 27 3 chr3 166074753 166075087 -61449491 + MER2 DNA MER2_type 2 343 -1 245 216 0 0 chr3 166075579 166075630 -61448948 + L2 LINE L2 2916 2966 -306 21 0 0 0 chr3 166075915 166075936 -61448642 + AT_rich Low_complexity Low_complexity 1 21 0 347 238 79 16 chr3 166077532 166077658 -61446920 - MER94 DNA DNA 0 134 1 3407 176 21 0 chr3 166077675 166078306 -61446272 - L1PA16 LINE L1 -9 6157 5514 3853 187 19 6 chr3 166078566 166079880 -61444698 - L1PA16 LINE L1 -340 5826 4496 905 165 0 68 chr3 166079902 166080078 -61444500 + FRAM SINE Alu 2 165 -1 2063 136 10 0 chr3 166080141 166080443 -61444135 - AluSq SINE Alu -8 305 1 2509 42 3 6 chr3 166080514 166080826 -61443752 + AluY SINE Alu 1 311 0 516 342 72 76 chr3 166080844 166081358 -61443220 - MLT1K LTR MaLR -75 513 2 1994 178 35 28 chr3 166082391 166082819 -61441759 - Tigger2a DNA MER2_type 0 434 4 189 282 28 14 chr3 166083104 166083175 -61441403 + MIR3 SINE MIR 132 203 -5 217 50 25 25 chr3 166083380 166083420 -61441158 + (TA)n Simple_repeat Simple_repeat 2 41 0 8995 235 43 10 chr3 166083465 166085529 -61439049 + ERVL-C1 LTR ERVL 3624 5755 -9 1232 236 17 57 chr3 166085530 166085936 -61438642 + MLT2C1 LTR ERVL 1 390 -7 5689 164 29 35 chr3 166086240 166087463 -61437115 + L1MC1 LINE L1 5106 6333 0 189 0 0 0 chr3 166088118 166088139 -61436439 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr3 166088810 166088832 -61435746 + AT_rich Low_complexity Low_complexity 1 22 0 693 260 257 14 chr3 166089287 166089579 -61434999 - MLT1G1 LTR MaLR -15 580 218 1299 127 0 11 chr3 166089672 166089861 -61434717 + AluSg/x SINE Alu 104 290 -22 684 278 139 29 chr3 166089862 166090279 -61434299 + Charlie7 DNA MER1_type 397 859 -1753 277 287 23 11 chr3 166090307 166090481 -61434097 + (TA)n Simple_repeat Simple_repeat 2 177 0 540 269 58 39 chr3 166090609 166090817 -61433761 + MLT1H1 LTR MaLR 334 545 -10 25 31 0 0 chr3 166090984 166091016 -61433562 + AT_rich Low_complexity Low_complexity 1 32 0 593 259 141 0 chr3 166091222 166091392 -61433186 + MIR SINE MIR 69 262 0 21 89 0 0 chr3 166091925 166091981 -61432597 + AT_rich Low_complexity Low_complexity 1 56 0 1166 130 0 0 chr3 166091990 166092159 -61432419 + AluSg/x SINE Alu 131 299 -13 1241 292 87 72 chr3 166092965 166093663 -61430915 + HAL1 LINE L1 238 924 -1583 1178 284 45 37 chr3 166093663 166094177 -61430401 - LTR33 LTR ERVL -3 518 1 1241 292 87 72 chr3 166094177 166094887 -61429691 + HAL1 LINE L1 924 1667 -840 216 0 0 0 chr3 166095031 166095055 -61429523 + (TG)n Simple_repeat Simple_repeat 2 25 0 245 307 0 0 chr3 166095086 166095161 -61429417 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 301 278 104 0 chr3 166095405 166095520 -61429058 + MIR SINE MIR 125 251 -11 383 271 39 39 chr3 166096165 166096294 -61428284 - MIR3 SINE MIR -52 156 28 22 0 0 0 chr3 166097298 166097320 -61427258 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr3 166097452 166097488 -61427090 + AT_rich Low_complexity Low_complexity 1 36 0 440 336 88 41 chr3 166097508 166098043 -61426535 - L1M4 LINE L1 -979 5167 4608 222 183 24 37 chr3 166098192 166098274 -61426304 + T-rich Low_complexity Low_complexity 1 81 0 243 298 77 30 chr3 166098357 166098525 -61426053 - L1M4 LINE L1 -1896 4250 4075 26 64 0 0 chr3 166098656 166098703 -61425875 + AT_rich Low_complexity Low_complexity 1 47 0 752 298 25 0 chr3 166099571 166099769 -61424809 + MIR SINE MIR 32 234 -28 772 232 53 88 chr3 166101272 166101681 -61422897 - Charlie8 DNA MER1_type -2151 266 1 2254 106 0 0 chr3 166102138 166102440 -61422138 + AluSx SINE Alu 1 302 -10 490 241 32 117 chr3 166102883 166103132 -61421446 - LTR33 LTR ERVL -2 519 292 268 288 50 0 chr3 166103181 166103261 -61421317 + MIR SINE MIR 141 224 -38 197 84 99 0 chr3 166103412 166103483 -61421095 + (TA)n Simple_repeat Simple_repeat 2 79 0 2154 119 0 3 chr3 166103563 166103978 -61420600 - AluSx SINE Alu 0 414 1 469 211 0 0 chr3 166104775 166104851 -61419727 + MER21B LTR ERV1 12 87 -776 2892 224 79 14 chr3 166104876 166105569 -61419009 + MER21B LTR ERV1 19 756 -107 1053 143 0 0 chr3 166105575 166105729 -61418849 + MLT1B LTR MaLR 230 383 -7 387 0 0 0 chr3 166105775 166105818 -61418760 + (TA)n Simple_repeat Simple_repeat 2 44 0 781 229 107 47 chr3 166106320 166106573 -61418005 + L1ME2 LINE L1 5789 6056 -108 418 280 159 6 chr3 166106721 166106903 -61417675 + LTR16B LTR ERVL 241 450 -14 323 138 58 30 chr3 166106917 166107003 -61417575 + L1ME2 LINE L1 6068 6161 -1 495 211 143 25 chr3 166107980 166108141 -61416437 - L2 LINE L2 -14 3258 3120 238 242 0 0 chr3 166108171 166108233 -61416345 - MER92C LTR ERV1 0 554 493 317 280 0 0 chr3 166108330 166108405 -61416173 - MER92B LTR ERV1 -557 79 5 594 0 0 0 chr3 166108608 166108674 -61415904 + (TA)n Simple_repeat Simple_repeat 2 67 0 27 49 0 0 chr3 166109550 166109591 -61414987 + AT_rich Low_complexity Low_complexity 1 41 0 186 354 52 10 chr3 166110778 166110874 -61413704 + MIR SINE MIR 31 130 -78 284 267 20 20 chr3 166112322 166112423 -61412155 + GA-rich Low_complexity Low_complexity 2 102 0 830 160 0 0 chr3 166113072 166113191 -61411387 + FLAM_C SINE Alu 1 119 -24 300 70 0 0 chr3 166113194 166113237 -61411341 + (TAAA)n Simple_repeat Simple_repeat 3 45 0 953 246 25 39 chr3 166113915 166114199 -61410379 + MLT1A1 LTR MaLR 84 363 -2 311 283 137 58 chr3 166114235 166114528 -61410050 - MLT1I LTR MaLR 0 409 94 29 28 0 0 chr3 166114833 166114869 -61409709 + AT_rich Low_complexity Low_complexity 1 36 0 1517 127 120 4 chr3 166115031 166115290 -61409288 + AluSx SINE Alu 24 312 0 299 270 0 45 chr3 166115399 166115488 -61409090 - L2 LINE L2 0 3313 3229 1411 178 47 22 chr3 166115799 166116096 -61408482 + AluJo SINE Alu 1 304 0 202 314 20 10 chr3 166116457 166116559 -61408019 - L2 LINE L2 -129 3184 3082 9591 188 12 19 chr3 166116563 166118360 -61406218 + LTR33-int LTR ERVL 2984 4768 -255 1083 214 86 53 chr3 166118552 166118911 -61405667 + MLT1C LTR MaLR 45 415 -52 314 286 62 0 chr3 166118900 166119012 -61405566 + LTR33 LTR ERVL 11 129 -392 * 1672 247 49 15 chr3 166119501 166119970 -61404608 + MLT1E3 LTR MaLR 140 624 0 1312 148 0 24 chr3 166120862 166121072 -61403506 + MLT1A1 LTR MaLR 1 205 -160 264 260 47 93 chr3 166121112 166121262 -61403316 - MIR SINE MIR -38 224 82 279 0 0 0 chr3 166121750 166121781 -61402797 + (CA)n Simple_repeat Simple_repeat 1 31 0 183 402 0 29 chr3 166122058 166122160 -61402418 + MIR SINE MIR 16 114 -148 219 69 0 0 chr3 166122352 166122381 -61402197 + (CAT)n Simple_repeat Simple_repeat 2 30 0 404 317 77 11 chr3 166122408 166122591 -61401987 + MIR SINE MIR 20 214 -48 6185 126 19 16 chr3 166124717 166125683 -61398895 - LTR5 LTR ERVK 0 969 1 1744 88 30 9 chr3 166125963 166126285 -61398293 + LTR7 LTR ERV1 1 418 -32 21 57 0 0 chr3 166126371 166126406 -61398172 + AT_rich Low_complexity Low_complexity 1 35 0 2537 157 30 63 chr3 166127028 166127603 -61396975 - L1MA9 LINE L1 0 6312 5757 2333 197 2 16 chr3 166127610 166128118 -61396460 + L1M2 LINE L1 4902 5402 -744 1858 121 10 43 chr3 166128120 166128425 -61396153 - THE1B LTR MaLR -2 362 68 482 172 0 0 chr3 166128438 166128525 -61396053 + L1M2 LINE L1 5395 5481 -831 2199 151 54 32 chr3 166128662 166129102 -61395476 + MSTA LTR MaLR 1 428 0 22 0 0 0 chr3 166130063 166130085 -61394493 + AT_rich Low_complexity Low_complexity 1 22 0 820 223 117 100 chr3 166130305 166130664 -61393914 + MLT1A1 LTR MaLR 1 365 0 322 383 12 12 chr3 166130700 166130867 -61393711 + L2 LINE L2 2885 3051 -221 222 338 102 13 chr3 166131115 166131272 -61393306 + L2 LINE L2 1786 1956 -1358 1407 265 74 42 chr3 166131605 166132103 -61392475 + MLT1E LTR MaLR 56 569 -24 330 26 0 0 chr3 166132103 166132142 -61392436 + (CA)n Simple_repeat Simple_repeat 2 40 0 1865 183 12 52 chr3 166132677 166133082 -61391496 - MLT1B LTR MaLR -1 389 1 1613 163 21 17 chr3 166133220 166133509 -61391069 - AluJo SINE Alu -22 290 1 24 0 0 0 chr3 166133619 166133643 -61390935 + AT_rich Low_complexity Low_complexity 1 24 0 732 257 114 7 chr3 166134783 166135063 -61389515 + MER5C DNA MER1_type 1 310 -14 543 311 119 32 chr3 166136181 166136646 -61387932 + L1ME3A LINE L1 5437 5946 -224 44 35 0 0 chr3 166138615 166138673 -61385905 + AT_rich Low_complexity Low_complexity 1 58 0 1667 135 0 0 chr3 166138784 166139028 -61385550 - MER4D LTR ERV1 -575 328 85 486 121 108 0 chr3 166139025 166139108 -61385470 + MER34 LTR ERV1 451 542 0 * 2779 186 31 71 chr3 166139728 166140256 -61384322 - LTR8 LTR ERV1 0 691 198 252 0 0 0 chr3 166140256 166140284 -61384294 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 2779 186 31 71 chr3 166140284 166140475 -61384103 - LTR8 LTR ERV1 -493 198 1 357 347 62 27 chr3 166141311 166141536 -61383042 - MIR SINE MIR 0 262 30 1930 128 7 17 chr3 166141892 166142180 -61382398 - AluSp SINE Alu -28 285 1 216 280 101 60 chr3 166142834 166143002 -61381576 + MIR SINE MIR 74 248 -14 2370 139 49 7 chr3 166143118 166143527 -61381051 + MSTA LTR MaLR 1 426 -2 482 317 78 9 chr3 166143559 166143789 -61380789 - MIR SINE MIR 0 262 17 3219 265 37 49 chr3 166144044 166144517 -61380061 - HERVL74 LTR ERVL -2560 3125 2648 2389 171 14 18 chr3 166144517 166144951 -61379627 + MSTB1 LTR MaLR 1 432 0 3219 265 37 49 chr3 166144951 166145522 -61379056 - HERVL74 LTR ERVL -3037 2648 2093 2715 201 83 48 chr3 166145681 166146416 -61378162 - HERVL74 LTR ERVL -3589 2096 1336 408 297 14 0 chr3 166146422 166146567 -61378011 + L1M4 LINE L1 4447 4593 -1553 450 238 40 0 chr3 166146583 166146709 -61377869 + L1M4 LINE L1 4738 4868 -1278 2298 231 49 25 chr3 166146723 166147740 -61376838 - L1M4 LINE L1 -4814 2143 1007 267 303 76 15 chr3 166148457 166148589 -61375989 - L1M4 LINE L1 -6692 167 28 513 208 6 3 chr3 166149157 166149513 -61375065 + (TA)n Simple_repeat Simple_repeat 1 357 0 246 219 116 24 chr3 166149739 166149903 -61374675 + Charlie7 DNA MER1_type 2434 2612 0 1997 198 27 12 chr3 166150531 166150945 -61373633 + MSTB LTR MaLR 5 424 -2 942 194 104 36 chr3 166151649 166151960 -61372618 - MSTA LTR MaLR 0 428 71 2935 142 15 15 chr3 166151960 166152438 -61372140 - MSTA-int LTR MaLR -21 1559 1082 458 253 71 44 chr3 166152438 166152620 -61371958 + PABL_B-int LTR ERV1 438 624 -1162 2362 311 50 71 chr3 166152683 166154519 -61370059 + PABL_B-int LTR ERV1 547 2344 -4778 761 128 0 0 chr3 166154699 166154808 -61369770 + AluSq/x SINE Alu 1 109 -204 793 80 0 24 chr3 166154811 166154936 -61369642 + (GGAA)n Simple_repeat Simple_repeat 3 124 0 2480 359 31 24 chr3 166154941 166156662 -61367916 + PABL_B-int LTR ERV1 2524 4710 -2978 863 323 56 27 chr3 166156890 166157339 -61367239 + PABL_B-int LTR ERV1 4674 5740 -2016 346 319 19 19 chr3 166158530 166158687 -61365891 + PABL_B-int LTR ERV1 6095 6251 -425 616 268 95 48 chr3 166159120 166159528 -61365050 + LTR38 LTR ERV1 140 547 -9 217 172 31 0 chr3 166159628 166159692 -61364886 + (TA)n Simple_repeat Simple_repeat 1 66 0 1290 225 19 3 chr3 166160085 166160392 -61364186 + L1MA9 LINE L1 5865 6176 -136 1005 286 141 16 chr3 166160870 166161437 -61363141 + L1ME3A LINE L1 5334 5971 -199 235 259 78 26 chr3 166161475 166161591 -61362987 + L1ME3A LINE L1 6048 6169 -1 390 262 128 36 chr3 166161655 166162368 -61362210 + L1M4 LINE L1 4342 5119 -1027 24 0 0 0 chr3 166162411 166162435 -61362143 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr3 166162569 166162604 -61361974 + AT_rich Low_complexity Low_complexity 1 35 0 26 30 0 0 chr3 166162867 166162900 -61361678 + AT_rich Low_complexity Low_complexity 1 33 0 1622 63 0 0 chr3 166163623 166163828 -61360750 - AluY SINE Alu -8 303 99 220 378 44 0 chr3 166165366 166165456 -61359122 - MIR3 SINE MIR -34 174 81 302 324 93 22 chr3 166167242 166167467 -61357111 - MIR SINE MIR -10 252 12 3849 135 3 17 chr3 166167612 166168257 -61356321 + L1PB2 LINE L1 5509 6144 -7 215 177 16 0 chr3 166168594 166168656 -61355922 + GA-rich Low_complexity Low_complexity 2 64 0 21 57 0 0 chr3 166168916 166168951 -61355627 + AT_rich Low_complexity Low_complexity 1 35 0 24 85 0 0 chr3 166170348 166170407 -61354171 + AT_rich Low_complexity Low_complexity 1 59 0 4562 64 38 3 chr3 166170742 166171744 -61352834 - MER11A LTR ERVK 0 1266 1 431 256 44 29 chr3 166173040 166173177 -61351401 - LTR16A LTR ERVL -17 433 295 556 275 22 14 chr3 166173636 166173774 -61350804 - LTR16A LTR ERVL -202 248 110 314 342 79 2 chr3 166174492 166174666 -61349912 + MIR SINE MIR 16 212 -50 338 254 38 0 chr3 166174747 166174850 -61349728 - MIR SINE MIR -44 218 112 293 333 135 31 chr3 166174986 166175430 -61349148 - L2 LINE L2 -1764 1550 1061 208 229 36 60 chr3 166176216 166176299 -61348279 + L2 LINE L2 3076 3156 -157 272 194 0 56 chr3 166176335 166176407 -61348171 + CT-rich Low_complexity Low_complexity 4 71 0 368 295 74 0 chr3 166176435 166176557 -61348021 + L2 LINE L2 3183 3313 0 195 324 114 9 chr3 166177202 166177307 -61347271 - L3 LINE CR1 -21 1556 1441 243 286 11 44 chr3 166177569 166177660 -61346918 - MER5A DNA MER1_type 0 189 102 1495 134 0 91 chr3 166177704 166178002 -61346576 - AluSg SINE Alu -14 296 26 862 172 0 32 chr3 166178505 166178662 -61345916 - AluJb SINE Alu -31 281 130 351 0 0 0 chr3 166178865 166178904 -61345674 + (CA)n Simple_repeat Simple_repeat 2 40 0 21 82 0 0 chr3 166179396 166179445 -61345133 + AT_rich Low_complexity Low_complexity 1 49 0 391 226 21 21 chr3 166179457 166179550 -61345028 - MIR SINE MIR -102 160 68 1593 207 0 3 chr3 166179605 166179895 -61344683 - AluJo SINE Alu -23 289 1 23 0 0 0 chr3 166180014 166180037 -61344541 + AT_rich Low_complexity Low_complexity 1 23 0 1502 178 29 91 chr3 166180223 166180463 -61344115 - MLT1B LTR MaLR 0 390 185 2137 123 0 0 chr3 166180463 166180764 -61343814 - AluSx SINE Alu -11 301 1 1502 178 29 91 chr3 166180764 166180939 -61343639 - MLT1B LTR MaLR -205 185 1 371 318 13 13 chr3 166180939 166181093 -61343485 - MIR SINE MIR -4 258 105 248 309 12 24 chr3 166181439 166181523 -61343055 + L2 LINE L2 3185 3267 -5 327 222 7 30 chr3 166181987 166182122 -61342456 + GA-rich Low_complexity Low_complexity 2 133 0 510 259 55 18 chr3 166182192 166182412 -61342166 + HAL1 LINE L1 1026 1253 -1254 1547 279 135 29 chr3 166182516 166183514 -61341064 + HAL1 LINE L1 1404 2507 0 300 194 61 51 chr3 166183641 166183739 -61340839 + L1MC4 LINE L1 6607 6705 -1337 24 67 0 0 chr3 166184377 166184422 -61340156 + AT_rich Low_complexity Low_complexity 1 45 0 332 318 22 15 chr3 166184422 166184597 -61339981 - MIR SINE MIR -56 206 34 21 36 0 0 chr3 166187852 166187880 -61336698 + AT_rich Low_complexity Low_complexity 1 28 0 2089 118 6 6 chr3 166188773 166189111 -61335467 + HERVH LTR ERV1 3656 3993 -3720 4370 142 0 1 chr3 166189113 166189776 -61334802 + HERVH LTR ERV1 4488 5149 -2564 1317 148 19 0 chr3 166189777 166189993 -61334585 + HERVH LTR ERV1 5600 5819 -1894 2360 96 50 13 chr3 166189993 166190369 -61334209 + HERVH LTR ERV1 7324 7713 0 2637 77 117 5 chr3 166190369 166190772 -61333806 + LTR7 LTR ERV1 1 448 -2 1205 307 120 19 chr3 166190817 166191342 -61333236 - MLT1G1 LTR MaLR -17 578 1 1121 44 0 7 chr3 166192059 166192195 -61332383 - THE1B LTR MaLR -2 362 228 525 250 68 99 chr3 166192190 166192514 -61332064 - MER39 LTR ERV1 -130 577 264 * 204 250 0 0 chr3 166192596 166192644 -61331934 + (TA)n Simple_repeat Simple_repeat 1 48 0 1829 199 23 23 chr3 166192660 166193053 -61331525 - Tigger2a DNA MER2_type -41 393 1 24 0 0 0 chr3 166193297 166193321 -61331257 + AT_rich Low_complexity Low_complexity 1 24 0 418 272 52 7 chr3 166194589 166194725 -61329853 + MER31B LTR ERV1 2 143 -323 807 115 36 13 chr3 166194736 166195226 -61329352 + (TA)n Simple_repeat Simple_repeat 2 690 0 47 53 0 0 chr3 166195226 166195301 -61329277 + AT_rich Low_complexity Low_complexity 1 75 0 1313 176 186 26 chr3 166195409 166195716 -61328862 + MLT2B1 LTR ERVL 114 469 -51 224 205 39 0 chr3 166195722 166195800 -61328778 + (TA)n Simple_repeat Simple_repeat 1 81 0 366 180 13 7 chr3 166195816 166195966 -61328612 + (TA)n Simple_repeat Simple_repeat 1 151 0 241 243 38 30 chr3 166197274 166197367 -61327211 - MIR SINE MIR -57 151 56 21 0 0 0 chr3 166197875 166197896 -61326682 + AT_rich Low_complexity Low_complexity 1 21 0 12847 95 2 30 chr3 166199133 166201140 -61323438 - HERVH LTR ERV1 -4742 2971 1020 585 136 30 6 chr3 166201286 166201455 -61323123 + (TA)n Simple_repeat Simple_repeat 2 174 0 28 29 0 0 chr3 166201466 166201501 -61323077 + AT_rich Low_complexity Low_complexity 1 35 0 1532 195 64 6 chr3 166201503 166201831 -61322747 + MER31A LTR ERV1 125 471 -14 6717 99 83 3 chr3 166202489 166203516 -61321062 + HERVH LTR ERV1 1 1109 -6604 193 169 15 46 chr3 166203638 166203703 -61320875 + CT-rich Low_complexity Low_complexity 3 65 0 345 245 119 26 chr3 166203703 166203854 -61320724 - HAL1 LINE L1 -2300 207 43 25 69 0 0 chr3 166204471 166204500 -61320078 + AT_rich Low_complexity Low_complexity 1 29 0 21 175 0 0 chr3 166204505 166204545 -61320033 + GC_rich Low_complexity Low_complexity 1 40 0 189 0 0 0 chr3 166204563 166204584 -61319994 + (T)n Simple_repeat Simple_repeat 1 21 0 26 30 0 0 chr3 166405680 166405713 -61118865 + AT_rich Low_complexity Low_complexity 1 33 0 534 277 69 40 chr3 166405767 166406244 -61118334 + L1M4 LINE L1 4102 4592 -1554 205 250 0 0 chr3 166406270 166406318 -61118260 + (TG)n Simple_repeat Simple_repeat 2 49 0 3345 157 34 5 chr3 166406350 166407528 -61117050 - L1PA12 LINE L1 -304 6179 4971 231 125 0 0 chr3 166407528 166407568 -61117010 + (T)n Simple_repeat Simple_repeat 1 40 0 11593 23 0 4 chr3 166407620 166409754 -61114824 - L1PA3 LINE L1 0 6155 4028 6425 45 0 0 chr3 166409755 166410603 -61113975 + L1P LINE L1 3125 3972 -2174 817 184 0 151 chr3 166411137 166411156 -61113422 - L1PA12 LINE L1 -1476 4985 4965 2202 129 25 25 chr3 166411156 166411520 -61113058 + THE1B LTR MaLR 1 364 0 817 184 0 151 chr3 166411520 166411805 -61112773 - L1PA12 LINE L1 -1496 4965 4727 11449 238 26 18 chr3 166411805 166414873 -61109705 - L1PA12 LINE L1 -2309 4152 1013 180 0 0 0 chr3 166415294 166415314 -61109264 + (T)n Simple_repeat Simple_repeat 1 20 0 1273 156 10 0 chr3 166415542 166415747 -61108831 - AluSq SINE Alu -11 302 96 21 95 0 0 chr3 166415987 166416050 -61108528 + AT_rich Low_complexity Low_complexity 1 63 0 35 0 0 0 chr3 166416153 166416188 -61108390 + AT_rich Low_complexity Low_complexity 1 35 0 2146 180 126 22 chr3 166416487 166416663 -61107915 + MLT2B3 LTR ERVL 1 157 -397 447 35 0 0 chr3 166416663 166416720 -61107858 + (TC)n Simple_repeat Simple_repeat 1 57 0 2146 180 126 22 chr3 166416720 166416997 -61107581 + MLT2B3 LTR ERVL 157 513 -41 506 16 16 0 chr3 166416997 166417060 -61107518 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 2146 180 126 22 chr3 166417060 166417104 -61107474 + MLT2B3 LTR ERVL 513 551 -3 2313 81 3 7 chr3 166417260 166417557 -61107021 + AluY SINE Alu 1 296 -15 23 33 0 0 chr3 166418045 166418075 -61106503 + AT_rich Low_complexity Low_complexity 1 30 0 1675 183 63 46 chr3 166418079 166418145 -61106433 - MSTB1 LTR MaLR 0 432 369 2257 118 0 3 chr3 166418145 166418459 -61106119 + AluSq SINE Alu 1 313 0 1675 183 63 46 chr3 166418459 166418803 -61105775 - MSTB1 LTR MaLR -63 369 15 1174 201 58 56 chr3 166419515 166419943 -61104635 + L1ME1 LINE L1 4667 5095 -1051 1175 181 11 47 chr3 166419947 166420103 -61104475 + MLT2C2 LTR ERVL 1 144 -320 1726 146 49 75 chr3 166420103 166420488 -61104090 - THE1C LTR MaLR 0 375 1 1175 181 11 47 chr3 166420488 166420607 -61103971 + MLT2C2 LTR ERVL 144 266 -198 1586 35 0 0 chr3 166420607 166420809 -61103769 - L1PA4 LINE L1 -613 5542 5341 5177 38 3 0 chr3 166420809 166421431 -61103147 + L1PA4 LINE L1 5529 6155 0 406 201 142 95 chr3 166421431 166421486 -61103092 + MLT2C2 LTR ERVL 247 298 -166 2200 170 34 36 chr3 166421486 166421980 -61102598 - L1MB1 LINE L1 0 6168 5676 406 201 142 95 chr3 166421980 166422093 -61102485 + MLT2C2 LTR ERVL 298 423 -41 1849 237 68 26 chr3 166422171 166422691 -61101887 + L1ME1 LINE L1 5174 5738 -428 219 69 0 0 chr3 166422691 166422720 -61101858 + (TA)n Simple_repeat Simple_repeat 1 29 0 1849 237 68 26 chr3 166422720 166422957 -61101621 + L1ME1 LINE L1 5738 5964 -202 1760 156 17 17 chr3 166422968 166423263 -61101315 - AluJb SINE Alu -17 295 1 243 316 23 23 chr3 166423273 166423406 -61101172 + L1ME1 LINE L1 6029 6161 -5 1536 206 21 0 chr3 166424230 166424350 -61100228 + AluJb SINE Alu 1 117 -195 420 20 0 0 chr3 166424350 166424399 -61100179 + (TAAA)n Simple_repeat Simple_repeat 2 50 0 1536 206 21 0 chr3 166424399 166424560 -61100018 + AluJb SINE Alu 117 288 -24 23 33 0 0 chr3 166425168 166425198 -61099380 + AT_rich Low_complexity Low_complexity 1 30 0 22 94 0 0 chr3 166425388 166425452 -61099126 + AT_rich Low_complexity Low_complexity 1 64 0 198 372 21 11 chr3 166425625 166425719 -61098859 + L2 LINE L2 2551 2645 -669 25 31 0 0 chr3 166425779 166425811 -61098767 + AT_rich Low_complexity Low_complexity 1 32 0 1832 166 7 3 chr3 166425910 166426205 -61098373 + AluSx SINE Alu 11 306 -6 1033 176 34 0 chr3 166426213 166426446 -61098132 + L1 LINE L1 4094 4334 -1812 621 49 0 0 chr3 166426447 166426528 -61098050 + (TTTC)n Simple_repeat Simple_repeat 4 84 0 716 169 25 0 chr3 166426528 166426646 -61097932 - FRAM SINE Alu -32 144 24 420 290 19 0 chr3 166426811 166426918 -61097660 + MER81 DNA DNA 5 113 -1 399 299 70 28 chr3 166426932 166427118 -61097460 - MLT2E LTR ERVL -455 208 8 1176 257 68 14 chr3 166427296 166428399 -61096179 - L1MD2 LINE L1 -179 5987 4862 722 278 53 41 chr3 166428426 166428861 -61095717 + L1MDa LINE L1 35 474 -6066 24 0 0 0 chr3 166428968 166428992 -61095586 + AT_rich Low_complexity Low_complexity 1 24 0 578 289 149 0 chr3 166429037 166429231 -61095347 + L2 LINE L2 2808 3030 -283 466 292 8 8 chr3 166429237 166429357 -61095221 + L2 LINE L2 3194 3313 0 340 265 97 97 chr3 166429709 166429988 -61094590 + L1ME4a LINE L1 5747 6025 -96 33 85 0 0 chr3 166430430 166430512 -61094066 + AT_rich Low_complexity Low_complexity 1 82 0 308 272 245 0 chr3 166431621 166431768 -61092810 - MIR SINE MIR -12 250 68 33 0 0 0 chr3 166432133 166432166 -61092412 + AT_rich Low_complexity Low_complexity 1 33 0 256 293 60 26 chr3 166432385 166432501 -61092077 - MIR SINE MIR -95 167 48 2313 65 3 20 chr3 166432651 166432957 -61091621 - AluY SINE Alu -10 301 1 2040 125 30 3 chr3 166433877 166434181 -61090397 - AluSx SINE Alu 0 312 1 451 235 124 20 chr3 166434481 166434634 -61089944 + MIR SINE MIR 65 233 -29 4581 155 21 3 chr3 166434775 166435670 -61088908 + L1 LINE L1 4423 5333 -813 2348 58 0 0 chr3 166435670 166435945 -61088633 + AluY SINE Alu 35 309 -2 185 259 0 35 chr3 166436314 166436372 -61088206 - MIR SINE MIR -5 257 202 2197 87 20 7 chr3 166436781 166437079 -61087499 + AluY SINE Alu 1 302 -9 1233 101 0 0 chr3 166437080 166437239 -61087339 + AluSp SINE Alu 134 292 -21 37 39 0 0 chr3 166437239 166437290 -61087288 + AT_rich Low_complexity Low_complexity 1 51 0 3063 155 50 5 chr3 166437314 166437908 -61086670 - L1PA16 LINE L1 -3 6163 5543 276 250 14 0 chr3 166438944 166439016 -61085562 + MIR SINE MIR 43 115 -93 247 68 23 0 chr3 166439639 166439683 -61084895 + L1MA3 LINE L1 6261 6305 0 569 319 150 35 chr3 166439740 166439925 -61084653 + L1MEc LINE L1 1025 1187 -5209 248 0 31 0 chr3 166439925 166439957 -61084621 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 569 319 150 35 chr3 166439957 166440476 -61084102 + L1MEc LINE L1 1187 1810 -4586 21 0 0 0 chr3 166440686 166440707 -61083871 + AT_rich Low_complexity Low_complexity 1 21 0 320 160 40 30 chr3 166440843 166440943 -61083635 + C-rich Low_complexity Low_complexity 4 104 0 2468 181 19 4 chr3 166440952 166441416 -61083162 + L1M1 LINE L1 1392 1862 -5703 1357 99 99 0 chr3 166441426 166441649 -61082929 + L1MA1 LINE L1 6058 6302 0 22 0 0 0 chr3 166441681 166441703 -61082875 + AT_rich Low_complexity Low_complexity 1 22 0 450 318 76 21 chr3 166443382 166443671 -61080907 + LTR16A LTR ERVL 146 450 0 1106 256 126 7 chr3 166446027 166446433 -61078145 + LTR33A LTR ERVL 70 523 0 456 113 0 0 chr3 166446501 166446572 -61078006 + (G)n Simple_repeat Simple_repeat 1 71 0 233 256 37 49 chr3 166446908 166446990 -61077588 - MIR SINE MIR -12 250 170 210 298 58 10 chr3 166447179 166447283 -61077295 + MIR SINE MIR 2 110 -152 3823 39 2 2 chr3 166447330 166447793 -61076785 + L1PA3 LINE L1 5693 6155 0 1773 232 115 34 chr3 166448069 166448863 -61075715 + HAL1 LINE L1 1003 1860 -647 1558 237 93 14 chr3 166449535 166450021 -61074557 + MLT1F LTR MaLR 1 524 -18 2055 134 0 54 chr3 166452040 166452354 -61072224 + AluSx SINE Alu 1 297 -15 662 296 88 25 chr3 166453999 166454239 -61070339 - MIR SINE MIR -3 259 5 744 229 23 6 chr3 166454521 166454696 -61069882 - MER5B DNA MER1_type 0 178 1 359 323 38 65 chr3 166454722 166454985 -61069593 + MIR SINE MIR 7 262 0 501 330 153 0 chr3 166455965 166456168 -61068410 - MIR SINE MIR -26 236 3 21 0 0 0 chr3 166456290 166456311 -61068267 + AT_rich Low_complexity Low_complexity 1 21 0 2327 103 3 3 chr3 166456585 166456895 -61067683 - AluSp SINE Alu -1 312 3 460 270 26 0 chr3 166457116 166457231 -61067347 + MIR SINE MIR 119 236 -26 387 0 0 0 chr3 166458664 166458707 -61065871 + (CA)n Simple_repeat Simple_repeat 2 44 0 24 77 0 0 chr3 166458775 166458827 -61065751 + AT_rich Low_complexity Low_complexity 1 52 0 186 255 0 21 chr3 166459893 166459940 -61064638 - MIR3 SINE MIR -21 187 142 675 317 37 81 chr3 166460877 166461395 -61063183 - LTR33 LTR ERVL -8 513 19 211 279 265 15 chr3 166461718 166461854 -61062724 + MIR3 SINE MIR 34 203 -5 3708 210 70 8 chr3 166461888 166462659 -61061919 - MER21B LTR ERV1 -32 831 13 267 365 106 10 chr3 166463063 166463167 -61061411 - L2 LINE L2 -9 3263 3150 351 0 0 0 chr3 166463259 166463298 -61061280 + (CA)n Simple_repeat Simple_repeat 2 40 0 436 243 18 53 chr3 166463298 166463372 -61061206 - LTR37A LTR ERV1 -23 403 328 1713 228 33 17 chr3 166463372 166463832 -61060746 + MLT1C LTR MaLR 1 467 0 436 243 18 53 chr3 166463832 166463926 -61060652 - LTR37A LTR ERV1 -98 328 241 42224 37 22 1 chr3 166463928 166469941 -61054637 - L1PA2 LINE L1 -7 6148 6 289 258 21 10 chr3 166470008 166470105 -61054473 - LTR37A LTR ERV1 -242 184 87 217 73 24 24 chr3 166470169 166470210 -61054368 + (TC)n Simple_repeat Simple_repeat 2 42 0 415 316 26 0 chr3 166471231 166471345 -61053233 - MIR SINE MIR -79 183 67 2214 114 3 0 chr3 166472366 166472663 -61051915 + AluSx SINE Alu 3 300 -12 4574 159 57 7 chr3 166472782 166473650 -61050928 - L1MA5 LINE L1 -4 6296 5386 43888 42 1 1 chr3 166473666 166479818 -61044760 - L1PA3 LINE L1 -3 6152 1 5461 192 30 24 chr3 166479819 166481112 -61043466 - L1MA5 LINE L1 -751 5395 4095 26 0 0 0 chr3 166481112 166481138 -61043440 + AT_rich Low_complexity Low_complexity 1 26 0 293 326 105 32 chr3 166481396 166481586 -61042992 - MIR SINE MIR -46 216 13 32 75 0 0 chr3 166482429 166482496 -61042082 + AT_rich Low_complexity Low_complexity 1 67 0 299 255 123 40 chr3 166483649 166483977 -61040601 - MLT1H LTR MaLR -19 530 130 291 370 87 22 chr3 166484059 166484243 -61040335 + L2 LINE L2 2911 3106 -166 185 184 0 53 chr3 166484259 166484297 -61040281 + MER5A DNA MER1_type 90 125 -64 300 300 50 50 chr3 166485000 166485160 -61039418 + L3b LINE CR1 1330 1489 -94 2046 255 30 20 chr3 166485265 166485826 -61038752 - MER74B LTR ERVL 0 622 56 185 279 23 0 chr3 166486473 166486516 -61038062 + L3 LINE CR1 1331 1374 -203 33 25 0 0 chr3 166487517 166487557 -61037021 + AT_rich Low_complexity Low_complexity 1 40 0 309 287 93 13 chr3 166487750 166487900 -61036678 - L1MC4a LINE L1 -1925 5952 5791 657 328 107 39 chr3 166488380 166489261 -61035317 - L1MC4a LINE L1 -1071 5144 4204 182 61 0 61 chr3 166490166 166490199 -61034379 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 221 328 74 25 chr3 166491882 166492004 -61032574 - MIR3 SINE MIR -69 139 12 247 330 43 18 chr3 166492007 166492289 -61032289 - L1MC4a LINE L1 -4085 2311 2023 6973 211 33 52 chr3 166492389 166494178 -61030400 - MER52A LTR ERV1 0 1755 1 523 305 78 56 chr3 166495050 166495371 -61029207 - L2 LINE L2 -460 2854 2527 272 295 21 32 chr3 166495621 166495716 -61028862 + L2 LINE L2 3173 3266 -6 23 54 0 0 chr3 166496181 166496218 -61028360 + AT_rich Low_complexity Low_complexity 1 37 0 245 182 18 0 chr3 166496276 166496331 -61028247 + (TATATG)n Simple_repeat Simple_repeat 3 58 0 210 171 0 0 chr3 166496687 166496728 -61027850 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 984 197 37 14 chr3 166498057 166498232 -61026346 + L1MB4 LINE L1 5956 6138 -42 1356 133 0 9 chr3 166498232 166498445 -61026133 + L1MB1 LINE L1 5945 6160 -8 984 197 37 14 chr3 166498445 166498487 -61026091 + L1MB4 LINE L1 6138 6178 -2 22 35 0 0 chr3 166498726 166498755 -61025823 + AT_rich Low_complexity Low_complexity 1 29 0 2213 114 3 3 chr3 166499760 166500066 -61024512 + AluSx SINE Alu 6 311 -1 371 273 61 45 chr3 166500259 166500391 -61024187 + L2 LINE L2 3137 3270 -2 27 49 0 0 chr3 166500778 166500819 -61023759 + AT_rich Low_complexity Low_complexity 1 41 0 1478 225 64 57 chr3 166501647 166502087 -61022491 - MLT2B3 LTR ERVL 0 554 112 32 0 0 0 chr3 166502507 166502539 -61022039 + GC_rich Low_complexity Low_complexity 1 32 0 5353 102 0 4 chr3 166502568 166503360 -61021218 - L1P LINE L1 -1595 4551 3763 575 88 0 0 chr3 166504344 166504424 -61020154 - MADE1 DNA Mariner 0 80 1 914 249 21 88 chr3 166505027 166505449 -61019129 - MLT2C1 LTR ERVL -3 394 1 575 88 0 0 chr3 166507736 166507816 -61016762 - MADE1 DNA Mariner 0 80 1 1175 228 19 83 chr3 166508419 166508840 -61015738 - MLT2C1 LTR ERVL -3 394 1 1928 233 49 47 chr3 166509023 166509576 -61015002 + MLT2B3 LTR ERVL 1 554 0 630 293 102 15 chr3 166509576 166509781 -61014797 - MIR SINE MIR -31 231 9 2067 124 3 3 chr3 166510529 166510828 -61013750 - AluSx SINE Alu -13 299 1 515 274 83 24 chr3 166511541 166511793 -61012785 - L1ME LINE L1 -303 5818 5552 949 188 41 57 chr3 166512226 166512471 -61012107 - MER101B LTR ERV1 -329 241 1 2118 51 55 0 chr3 166513717 166514040 -61010538 + L1PA5 LINE L1 5842 6179 0 1051 234 192 4 chr3 166514961 166515441 -61009137 + LTR50 LTR ERVL 1 650 -145 215 261 0 62 chr3 166515850 166515915 -61008663 + L3 LINE CR1 317 377 -1200 682 282 52 40 chr3 166515991 166516243 -61008335 + L3 LINE CR1 404 658 -919 1378 208 115 22 chr3 166516243 166516556 -61008022 - MER90 LTR ERV1 0 614 273 657 232 60 0 chr3 166516587 166516738 -61007840 - MER90 LTR ERV1 -415 160 1 237 268 41 31 chr3 166516747 166516844 -61007734 + L3 LINE CR1 660 757 -820 192 360 67 55 chr3 166516879 166516954 -61007624 - MIR3 SINE MIR -41 167 94 3514 168 39 12 chr3 166516954 166517645 -61006933 + MER67C LTR ERV1 1 710 0 192 360 67 55 chr3 166517645 166517733 -61006845 - MIR3 SINE MIR -114 94 2 266 317 183 0 chr3 166519340 166519504 -61005074 - L2 LINE L2 -911 2403 2210 553 358 54 4 chr3 166520427 166520667 -61003911 - MIR SINE MIR -8 254 3 268 200 27 0 chr3 166521069 166521144 -61003434 + (CATATA)n Simple_repeat Simple_repeat 4 80 0 34 65 0 0 chr3 166521183 166521245 -61003333 + AT_rich Low_complexity Low_complexity 1 62 0 677 185 51 22 chr3 166521305 166521483 -61003095 + MER53 DNA DNA 4 186 -3 623 239 135 62 chr3 166522207 166522664 -61001914 + MLT1G3 LTR MaLR 33 590 0 435 244 26 60 chr3 166522672 166522906 -61001672 + L1MC5 LINE L1 7396 7621 -340 22 35 0 0 chr3 166523199 166523228 -61001350 + AT_rich Low_complexity Low_complexity 1 29 0 26 64 0 0 chr3 166523367 166523414 -61001164 + AT_rich Low_complexity Low_complexity 1 47 0 24 0 0 0 chr3 166524566 166524590 -60999988 + AT_rich Low_complexity Low_complexity 1 24 0 212 232 0 14 chr3 166524711 166524780 -60999798 + (TA)n Simple_repeat Simple_repeat 1 68 0 288 0 0 0 chr3 166524794 166524826 -60999752 + (TG)n Simple_repeat Simple_repeat 2 33 0 4157 138 33 21 chr3 166524969 166530912 -60993666 + L1PA8 LINE L1 12 6158 -14 4078 211 53 15 chr3 166531597 166533509 -60991069 - L1MB8 LINE L1 -37 6141 4151 214 383 9 9 chr3 166533872 166533987 -60990591 + MIR SINE MIR 43 157 -105 38 39 0 0 chr3 166534214 166534266 -60990312 + AT_rich Low_complexity Low_complexity 1 52 0 228 67 0 0 chr3 166534902 166534932 -60989646 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 353 322 19 49 chr3 166535102 166535307 -60989271 + LTR33 LTR ERVL 1 199 -322 3327 271 80 16 chr3 166535330 166536462 -60988116 - MER69B DNA AcHobo -21 1205 1 374 245 19 130 chr3 166536552 166536689 -60987889 + LTR33A LTR ERVL 337 445 -78 2175 119 3 3 chr3 166536689 166537001 -60987577 + AluSx SINE Alu 1 312 0 374 245 19 130 chr3 166537001 166537071 -60987507 + LTR33A LTR ERVL 445 521 -2 1142 210 129 10 chr3 166537208 166537518 -60987060 + LTR52 LTR ERVL 11 357 -64 25 31 0 0 chr3 166538507 166538539 -60986039 + AT_rich Low_complexity Low_complexity 1 32 0 346 206 69 29 chr3 166538648 166538750 -60985828 - HsTC2a DNA Tc2 -2 740 635 643 304 117 18 chr3 166538752 166539147 -60985431 - HsTC2a DNA Tc2 -308 436 3 237 180 0 0 chr3 166541359 166541409 -60983169 + GA-rich Low_complexity Low_complexity 1 50 0 191 328 30 0 chr3 166541819 166541886 -60982692 - MIR3 SINE MIR -39 169 101 413 205 112 33 chr3 166542006 166542253 -60982325 - MER2 DNA MER2_type 0 345 48 1015 150 183 5 chr3 166542253 166542466 -60982112 + MER6 DNA MER2_type 614 864 -1 431 312 29 23 chr3 166542531 166542579 -60981999 - MER5B DNA MER1_type -1 177 131 3415 119 27 7 chr3 166542579 166543134 -60981444 + L1MA2 LINE L1 5739 6304 0 431 312 29 23 chr3 166543134 166543258 -60981320 - MER5B DNA MER1_type -47 131 4 4204 216 70 47 chr3 166543272 166543846 -60980732 + Charlie1a DNA MER1_type 5 564 -2197 2359 68 0 3 chr3 166543846 166544142 -60980436 - AluY SINE Alu -16 295 1 4204 216 70 47 chr3 166544142 166544982 -60979596 + Charlie1a DNA MER1_type 564 1451 -4 26 74 0 0 chr3 166545784 166545838 -60978740 + AT_rich Low_complexity Low_complexity 1 54 0 189 286 170 18 chr3 166546894 166547006 -60977572 - MIR SINE MIR -40 222 94 311 301 9 0 chr3 166547491 166547604 -60976974 - L1ME LINE L1 -268 5853 5740 193 323 75 30 chr3 166547653 166547786 -60976792 - L2 LINE L2 0 3313 3175 297 343 56 56 chr3 166547998 166548319 -60976259 + MLT1I LTR MaLR 89 409 0 364 308 35 12 chr3 166548442 166548611 -60975967 - L1ME LINE L1 -429 5692 5520 358 340 49 16 chr3 166549137 166549322 -60975256 + MIR3 SINE MIR 15 205 -3 25 0 0 0 chr3 166550276 166550301 -60974277 + AT_rich Low_complexity Low_complexity 1 25 0 285 176 8 160 chr3 166551372 166551497 -60973081 - LTR16C LTR ERVL -4 487 382 1666 227 62 0 chr3 166552545 166552838 -60971740 + MER63B DNA MER1_type 7 333 -729 1665 174 0 0 chr3 166552838 166553113 -60971465 - AluSx SINE Alu -37 275 1 1666 227 62 0 chr3 166553113 166553224 -60971354 + MER63B DNA MER1_type 333 436 0 2333 71 0 13 chr3 166553235 166553546 -60971032 - AluY SINE Alu -4 307 1 33 0 0 0 chr3 166554358 166554391 -60970187 + AT_rich Low_complexity Low_complexity 1 33 0 612 148 9 0 chr3 166554391 166554499 -60970079 - AluSg/x SINE Alu -24 288 180 617 215 26 52 chr3 166555288 166555479 -60969099 - L1MC5 LINE L1 -44 7917 7732 239 301 62 44 chr3 166555890 166556003 -60968575 + MIR SINE MIR 117 231 -31 21 57 0 0 chr3 166556098 166556133 -60968445 + AT_rich Low_complexity Low_complexity 1 35 0 416 187 13 0 chr3 166556622 166556697 -60967881 + MADE1 DNA Mariner 1 76 -4 21 0 0 0 chr3 166557192 166557213 -60967365 + AT_rich Low_complexity Low_complexity 1 21 0 216 305 92 43 chr3 166557260 166557424 -60967154 - MIR SINE MIR -78 184 13 6151 142 40 10 chr3 166557719 166559403 -60965175 + L1MA2 LINE L1 4573 6304 0 694 290 121 31 chr3 166559461 166559646 -60964932 + L1MEc LINE L1 1025 1192 -5023 248 0 31 0 chr3 166559646 166559678 -60964900 + (TAGA)n Simple_repeat Simple_repeat 2 34 0 694 290 121 31 chr3 166559678 166561021 -60963557 + L1MEc LINE L1 1192 2665 -3550 2750 153 56 6 chr3 166561134 166561649 -60962929 + L1MC3 LINE L1 6137 6334 -10 251 277 96 97 chr3 166561772 166561958 -60962620 + MIR SINE MIR 2 187 -66 22 0 0 0 chr3 166562204 166562226 -60962352 + AT_rich Low_complexity Low_complexity 1 22 0 234 316 13 0 chr3 166562967 166563043 -60961535 - MIR SINE MIR -164 98 22 27 0 0 0 chr3 166563328 166563355 -60961223 + AT_rich Low_complexity Low_complexity 1 27 0 1903 146 50 16 chr3 166564210 166564573 -60960005 + THE1C LTR MaLR 1 375 0 367 310 101 6 chr3 166564661 166564819 -60959759 - MIR3 SINE MIR -1 207 35 658 242 96 7 chr3 166565016 166565285 -60959293 + MLT1A2 LTR MaLR 4 371 -3 339 212 0 0 chr3 166565321 166565387 -60959191 - Alu SINE Alu -2 298 233 26 0 0 0 chr3 166568191 166568217 -60956361 + AT_rich Low_complexity Low_complexity 1 26 0 6992 155 4 17 chr3 166568651 166568680 -60955898 + L1P LINE L1 4136 4164 -1982 4979 115 19 3 chr3 166568680 166569435 -60955143 - L1PA11 LINE L1 0 6174 5408 6992 155 4 17 chr3 166569435 166570674 -60953904 + L1PA11 LINE L1 4164 5387 -759 255 253 61 10 chr3 166571958 166572057 -60952521 + (TATATG)n Simple_repeat Simple_repeat 5 108 0 206 167 48 0 chr3 166572075 166572159 -60952419 + (TA)n Simple_repeat Simple_repeat 2 89 0 230 193 17 17 chr3 166574459 166574578 -60950000 + (TA)n Simple_repeat Simple_repeat 1 119 0 29 28 0 0 chr3 166575128 166575164 -60949414 + AT_rich Low_complexity Low_complexity 1 36 0 415 296 153 37 chr3 166575263 166575426 -60949152 + MIR SINE MIR 20 209 -53 1883 160 128 8 chr3 166575426 166575808 -60948770 + MSTA LTR MaLR 1 428 0 415 296 153 37 chr3 166575808 166575833 -60948745 + MIR SINE MIR 209 230 -32 1407 200 64 37 chr3 166576893 166577268 -60947310 - MLT1B LTR MaLR -5 385 1 198 0 0 0 chr3 166578142 166578164 -60946414 + (TTTTA)n Simple_repeat Simple_repeat 4 25 0 685 282 69 28 chr3 166578563 166578854 -60945724 + MLT1K LTR MaLR 282 584 -4 627 173 13 13 chr3 166579866 166580016 -60944562 + GA-rich Low_complexity Low_complexity 3 152 0 368 248 15 6 chr3 166580300 166580638 -60943940 + (TA)n Simple_repeat Simple_repeat 1 341 0 22 0 0 0 chr3 166582795 166582817 -60941761 + AT_rich Low_complexity Low_complexity 1 22 0 433 301 38 0 chr3 166582968 166583101 -60941477 + L2 LINE L2 2675 2812 -502 1422 244 45 5 chr3 166584299 166584680 -60939898 - MSTD LTR MaLR 0 396 1 204 125 0 0 chr3 166585125 166585157 -60939421 + (T)n Simple_repeat Simple_repeat 1 32 0 252 280 57 90 chr3 166585160 166585371 -60939207 + MLT1K LTR MaLR 265 468 -120 23 33 0 0 chr3 166585690 166585720 -60938858 + AT_rich Low_complexity Low_complexity 1 30 0 2034 115 38 0 chr3 166586721 166586843 -60937735 + AluSx SINE Alu 1 117 -195 186 71 0 0 chr3 166586843 166586871 -60937707 + (TAAA)n Simple_repeat Simple_repeat 2 29 0 2034 115 38 0 chr3 166586871 166587036 -60937542 + AluSx SINE Alu 117 299 -13 288 293 172 17 chr3 166588743 166588859 -60935719 - L2 LINE L2 0 3313 3180 945 97 49 0 chr3 166589127 166589271 -60935307 + AluSc SINE Alu 154 304 -5 36 62 0 0 chr3 166590270 166590334 -60934244 + AT_rich Low_complexity Low_complexity 1 64 0 222 222 19 0 chr3 166590501 166590555 -60934023 + MIR SINE MIR 84 138 -124 271 211 19 0 chr3 166590562 166590614 -60933964 - L1MEd LINE L1 -5506 613 561 213 39 0 0 chr3 166591006 166591032 -60933546 + (CA)n Simple_repeat Simple_repeat 2 27 0 207 100 0 0 chr3 166591459 166591489 -60933089 + (TG)n Simple_repeat Simple_repeat 2 31 0 189 196 0 0 chr3 166591561 166591607 -60932971 + (CATA)n Simple_repeat Simple_repeat 3 48 0 30 27 0 0 chr3 166591823 166591860 -60932718 + AT_rich Low_complexity Low_complexity 1 37 0 202 300 17 17 chr3 166591931 166592051 -60932527 + (TA)n Simple_repeat Simple_repeat 2 121 0 1935 199 82 50 chr3 166593607 166594144 -60930434 + MLT2B3 LTR ERVL 1 554 0 27 49 0 0 chr3 166594972 166595013 -60929565 + AT_rich Low_complexity Low_complexity 1 41 0 369 273 61 45 chr3 166595400 166595532 -60929046 - L2 LINE L2 -2 3270 3137 2232 113 3 3 chr3 166595726 166596035 -60928543 - AluSg SINE Alu -1 309 1 384 315 109 33 chr3 166596148 166596332 -60928246 - MIR SINE MIR -64 198 1 232 342 20 13 chr3 166599366 166599515 -60925063 + L2 LINE L2 2861 3010 -262 567 265 16 42 chr3 166599676 166599865 -60924713 + MIR SINE MIR 79 262 0 685 285 36 51 chr3 166600109 166600362 -60924216 + MIR SINE MIR 1 249 -13 587 272 51 63 chr3 166600824 166601078 -60923500 + MIR SINE MIR 2 252 -10 343 289 78 8 chr3 166601373 166601501 -60923077 + MER69 DNA AcHobo 12 148 -1078 2173 110 10 0 chr3 166602860 166603161 -60921417 + AluSg SINE Alu 1 304 -6 1383 226 110 53 chr3 166603184 166603676 -60920902 + MLT2B1 LTR ERVL 1 520 0 27 49 0 0 chr3 166604145 166604186 -60920392 + AT_rich Low_complexity Low_complexity 1 41 0 275 160 38 47 chr3 166604211 166604317 -60920261 + (TTATA)n Simple_repeat Simple_repeat 5 109 0 236 253 67 0 chr3 166604348 166604423 -60920155 + L1 LINE L1 987 1066 -5783 240 35 0 0 chr3 166604736 166604765 -60919813 + (CA)n Simple_repeat Simple_repeat 2 30 0 7410 229 44 15 chr3 166604768 166607272 -60917306 + L1PA15-16 LINE L1 1263 3855 -2994 925 126 0 0 chr3 166607279 166607406 -60917172 + AluSx SINE Alu 1 127 -186 3990 37 17 0 chr3 166607417 166607900 -60916678 - L1PA5 LINE L1 -7 6147 5657 1268 111 17 17 chr3 166607920 166608100 -60916478 + AluSx SINE Alu 121 300 -12 6566 218 27 26 chr3 166608132 166609246 -60915332 + L1 LINE L1 3882 5000 -1848 1995 118 28 3 chr3 166609246 166609534 -60915044 - AluSx SINE Alu -12 300 6 6566 218 27 26 chr3 166609534 166610129 -60914449 + L1 LINE L1 5000 5593 -1255 1907 179 108 3 chr3 166610135 166610516 -60914062 + MSTB LTR MaLR 6 426 0 4699 132 60 27 chr3 166610516 166611754 -60912824 + L1PA16 LINE L1 4888 6164 -2 28 29 0 0 chr3 166611775 166611810 -60912768 + AT_rich Low_complexity Low_complexity 1 35 0 367 157 65 20 chr3 166611834 166611987 -60912591 + (TTATA)n Simple_repeat Simple_repeat 1 160 0 359 291 73 86 chr3 166612217 166612451 -60912127 + L2 LINE L2 3045 3275 -38 360 0 0 0 chr3 166612456 166612496 -60912082 + (TGAA)n Simple_repeat Simple_repeat 1 40 0 253 150 0 0 chr3 166612805 166612845 -60911733 + MSTB2 LTR MaLR 418 457 0 25 0 0 0 chr3 166613165 166613190 -60911388 + AT_rich Low_complexity Low_complexity 1 25 0 342 0 0 0 chr3 166613513 166613551 -60911027 + (TG)n Simple_repeat Simple_repeat 2 39 0 285 179 0 0 chr3 166613647 166613703 -60910875 - MLT2B1 LTR ERVL 0 520 465 237 172 0 138 chr3 166613727 166613814 -60910764 - MLT2B1 LTR ERVL -11 509 435 1824 234 93 5 chr3 166613814 166614245 -60910333 - MLT2B1 LTR ERVL -50 470 2 2956 130 50 100 chr3 166614280 166614882 -60909696 + LTR19B LTR ERV1 1 572 -8 2466 70 3 0 chr3 166614882 166615182 -60909396 - AluY SINE Alu -10 301 1 313 310 69 7 chr3 166615295 166615440 -60909138 - L2 LINE L2 0 3313 3160 1946 152 18 18 chr3 166615646 166615981 -60908597 - MER2 DNA MER2_type -10 335 1 215 160 40 0 chr3 166615982 166616032 -60908546 + (CATATA)n Simple_repeat Simple_repeat 2 53 0 254 258 11 43 chr3 166616032 166616125 -60908453 + L1MC4 LINE L1 6614 6703 -1339 1511 221 123 68 chr3 166616422 166617015 -60907563 - MLT1E2 LTR MaLR 0 626 1 384 282 41 67 chr3 166617528 166617663 -60906915 + MER5A DNA MER1_type 11 134 -44 * 743 214 12 64 chr3 166617662 166617835 -60906743 + MER5A DNA MER1_type 26 189 0 658 282 24 0 chr3 166617844 166618014 -60906564 + MER5B DNA MER1_type 2 175 -3 218 291 209 0 chr3 166618049 166618135 -60906443 - MER5B DNA MER1_type 0 178 75 440 254 32 32 chr3 166618170 166618355 -60906223 - L1ME1 LINE L1 -20 6146 5962 * 480 257 87 19 chr3 166618352 166618682 -60905896 - L1MCc LINE L1 -4887 1536 1346 355 109 0 16 chr3 166618691 166618755 -60905823 + LTR24C LTR ERV1 1 63 -572 * 2258 118 113 19 chr3 166618732 166619148 -60905430 + LTR24C LTR ERV1 174 628 -7 2111 128 33 28 chr3 166619208 166619568 -60905010 + Tigger2a DNA MER2_type 1 362 -72 1091 258 61 71 chr3 166619584 166619730 -60904848 - L1MCc LINE L1 -5136 1287 1141 3248 225 80 37 chr3 166619730 166620558 -60904020 + MER21B LTR ERV1 1 863 0 1091 258 61 71 chr3 166620558 166620888 -60903690 - L1MCc LINE L1 -5282 1141 816 417 312 99 31 chr3 166621060 166621505 -60903073 - L1MCc LINE L1 -5924 499 25 247 281 0 0 chr3 166621506 166621570 -60903008 + MER5B DNA MER1_type 112 175 -3 2245 118 0 3 chr3 166622311 166622624 -60901954 + AluSx SINE Alu 1 312 0 264 111 0 0 chr3 166622954 166622999 -60901579 + (CA)n Simple_repeat Simple_repeat 2 46 0 23 0 0 0 chr3 166623738 166623761 -60900817 + AT_rich Low_complexity Low_complexity 1 23 0 316 211 95 42 chr3 166624080 166624175 -60900403 - MER63 DNA MER1_type -310 752 27 25 0 0 0 chr3 166625503 166625528 -60899050 + AT_rich Low_complexity Low_complexity 1 25 0 1314 252 87 25 chr3 166625983 166626384 -60898194 + L1MB8 LINE L1 2 427 -6115 1050 183 31 0 chr3 166626469 166626698 -60897880 + L1MB2 LINE L1 5936 6171 0 2064 232 34 11 chr3 166626728 166627344 -60897234 + L1MB8 LINE L1 5111 5740 -904 1971 87 26 4 chr3 166627492 166627757 -60896821 + AluSc SINE Alu 23 293 -16 735 211 44 39 chr3 166627785 166627989 -60896589 - L1MB8 LINE L1 -21 6157 5953 3945 180 44 18 chr3 166628011 166628920 -60895658 + L1MB8 LINE L1 5735 6655 -21 319 325 72 57 chr3 166629335 166629469 -60895109 + L1M4 LINE L1 4734 4864 -1282 1662 66 99 105 chr3 166629469 166629608 -60894970 + AluY SINE Alu 1 139 -172 2437 64 0 13 chr3 166629608 166629921 -60894657 + AluY SINE Alu 1 309 -2 1662 66 99 105 chr3 166629921 166630085 -60894493 + AluY SINE Alu 139 302 -9 319 325 72 57 chr3 166630085 166630215 -60894363 + L1M4 LINE L1 4864 5002 -1144 22 70 0 0 chr3 166630216 166630259 -60894319 + AT_rich Low_complexity Low_complexity 1 43 0 23 68 0 0 chr3 166630490 166630534 -60894044 + AT_rich Low_complexity Low_complexity 1 44 0 737 154 0 15 chr3 166630617 166630753 -60893825 - L1PA15 LINE L1 -7 6158 6025 618 164 78 16 chr3 166630753 166630881 -60893697 + THE1C LTR MaLR 3 138 -237 5698 108 40 0 chr3 166630898 166631961 -60892617 + L1PA13 LINE L1 5062 6159 -4 3548 193 19 18 chr3 166631977 166632755 -60891823 - L1MB7 LINE L1 -16 6168 5390 1304 248 70 31 chr3 166632753 166633342 -60891236 - L1MB7 LINE L1 -2790 3356 2745 * 234 0 0 0 chr3 166633423 166633449 -60891129 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1890 189 68 34 chr3 166633461 166633905 -60890673 - LTR2B LTR ERV1 0 490 32 23 33 0 0 chr3 166633925 166633955 -60890623 + AT_rich Low_complexity Low_complexity 1 30 0 1060 264 69 31 chr3 166634727 166635076 -60889502 - MLT1I LTR MaLR -9 400 39 1616 246 105 7 chr3 166635080 166635624 -60888954 + L1ME2 LINE L1 5542 6138 -26 25 0 0 0 chr3 166635760 166635785 -60888793 + AT_rich Low_complexity Low_complexity 1 25 0 756 117 9 1 chr3 166635794 166635950 -60888628 + L1MA1 LINE L1 5779 5937 -226 243 274 0 0 chr3 166636363 166636414 -60888164 + MIR SINE MIR 206 256 -6 375 274 5 19 chr3 166636455 166636881 -60887697 + CT-rich Low_complexity Low_complexity 1 420 0 24 100 0 0 chr3 166637078 166637158 -60887420 + AT_rich Low_complexity Low_complexity 1 80 0 2411 237 88 32 chr3 166637471 166637558 -60887020 - L1MC4 LINE L1 -357 7531 7450 5773 56 43 5 chr3 166637558 166638308 -60886270 + LTR17 LTR ERV1 1 778 -2 2411 237 88 32 chr3 166638308 166638788 -60885790 - L1MC4 LINE L1 -438 7450 6998 5170 60 40 1 chr3 166638788 166639483 -60885095 + LTR30 LTR ERV1 1 722 0 2411 237 88 32 chr3 166639483 166639791 -60884787 - L1MC4 LINE L1 -890 6998 6538 2189 111 19 0 chr3 166639791 166640098 -60884480 - AluSq SINE Alu 0 313 1 2411 237 88 32 chr3 166640098 166640202 -60884376 - L1MC4 LINE L1 -1350 6538 6441 518 299 137 38 chr3 166640460 166640854 -60883724 - LTR16B LTR ERVL 0 464 32 202 244 22 0 chr3 166641870 166641915 -60882663 - L2 LINE L2 -7 3306 3261 1209 213 53 10 chr3 166641923 166642223 -60882355 + MER33 DNA MER1_type 3 315 -9 338 298 182 18 chr3 166642245 166642470 -60882108 + MLT1I LTR MaLR 1 262 -147 2816 197 143 83 chr3 166642615 166642829 -60881749 + L1MC3 LINE L1 6703 6903 -882 180 77 0 0 chr3 166642829 166642855 -60881723 + (TAAAA)n Simple_repeat Simple_repeat 2 27 0 2816 197 143 83 chr3 166642855 166642995 -60881583 + L1MC3 LINE L1 6903 7033 -752 320 243 71 0 chr3 166642995 166643065 -60881513 + MLT1F1 LTR MaLR 37 111 -456 2816 197 143 83 chr3 166643065 166643247 -60881331 + L1MC3 LINE L1 7033 7203 -582 2241 138 28 19 chr3 166643247 166643608 -60880970 + THE1B LTR MaLR 1 364 0 2816 197 143 83 chr3 166643608 166644015 -60880563 + L1MC3 LINE L1 7203 7778 -7 227 121 0 0 chr3 166644567 166644600 -60879978 - U2 snRNA snRNA -155 33 1 2606 52 3 0 chr3 166646183 166646518 -60878060 - AluY SINE Alu 0 340 5 340 310 65 26 chr3 166646535 166646690 -60877888 + MIR SINE MIR 102 262 0 29 0 0 0 chr3 166646937 166646966 -60877612 + AT_rich Low_complexity Low_complexity 1 29 0 2108 97 0 0 chr3 166647144 166647403 -60877175 + AluSg SINE Alu 3 261 -49 334 264 68 55 chr3 166648769 166648932 -60875646 + MIR SINE MIR 90 254 -8 233 150 0 0 chr3 166649780 166649820 -60874758 - MIR SINE MIR -38 224 185 198 0 0 0 chr3 166649821 166649843 -60874735 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 15072 157 44 5 chr3 166649849 166653313 -60871265 - L1PA8 LINE L1 -21 6151 2550 438 284 5 119 chr3 166653322 166653523 -60871055 - MIR SINE MIR -72 190 13 261 0 0 0 chr3 166654486 166654515 -60870063 + (CA)n Simple_repeat Simple_repeat 2 30 0 447 317 60 0 chr3 166655261 166655444 -60869134 - MER102a DNA MER1_type -4 326 133 183 80 0 0 chr3 166655479 166655504 -60869074 + (GGAA)n Simple_repeat Simple_repeat 2 26 0 423 238 24 56 chr3 166655552 166655678 -60868900 - MIR3 SINE MIR -54 154 33 6702 133 44 19 chr3 166656310 166656389 -60868189 + Tigger3b DNA MER2_type 1 77 -2951 2120 96 14 0 chr3 166656389 166656681 -60867897 + AluSg SINE Alu 1 296 -14 6702 133 44 19 chr3 166656681 166657802 -60866776 + Tigger3b DNA MER2_type 77 1231 0 2300 115 0 3 chr3 166658689 166659002 -60865576 - AluSx SINE Alu 0 312 1 660 309 148 43 chr3 166659230 166659790 -60864788 + L2 LINE L2 2178 2796 -518 230 272 65 43 chr3 166659864 166659956 -60864622 + L2 LINE L2 2969 3062 -210 1046 289 105 40 chr3 166660020 166660859 -60863719 - L2 LINE L2 -1 3312 2411 11444 139 38 20 chr3 166660860 166662843 -60861735 - Tigger7 DNA MER2_type -1 2486 468 2247 136 28 19 chr3 166662843 166663204 -60861374 - THE1B LTR MaLR 0 364 1 11186 109 3 9 chr3 166663204 166664794 -60859784 - THE1B-int LTR MaLR 0 1580 1 2253 130 28 19 chr3 166664794 166665155 -60859423 - THE1B LTR MaLR 0 364 1 2220 213 25 36 chr3 166665156 166665631 -60858947 - Tigger7 DNA MER2_type -263 470 1 492 288 14 7 chr3 166665636 166665775 -60858803 - L2 LINE L2 -906 2408 2269 1757 169 130 16 chr3 166665794 166666178 -60858400 - MSTA LTR MaLR 0 428 1 7505 152 143 10 chr3 166666178 166667571 -60857007 - MSTA-int LTR MaLR 0 1580 3 1853 127 150 44 chr3 166667573 166667782 -60856796 - MSTA LTR MaLR 0 428 243 2014 99 7 11 chr3 166667782 166668106 -60856472 - AluSp SINE Alu 0 324 2 1853 127 150 44 chr3 166668106 166668282 -60856296 - MSTA LTR MaLR -185 243 1 326 202 21 64 chr3 166668332 166668426 -60856152 + L2 LINE L2 3221 3310 -3 225 250 64 93 chr3 166668910 166669050 -60855528 + Charlie8 DNA MER1_type 131 266 -2151 2861 233 61 52 chr3 166669163 166669482 -60855096 + L1ME2 LINE L1 4958 5272 -892 1563 209 42 0 chr3 166669482 166669812 -60854766 - MER2 DNA MER2_type 0 344 1 2861 233 61 52 chr3 166669812 166670680 -60853898 + L1ME2 LINE L1 5272 6156 -8 182 105 26 0 chr3 166671192 166671230 -60853348 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 213 39 0 0 chr3 166671231 166671257 -60853321 + (TTG)n Simple_repeat Simple_repeat 2 27 0 21 57 0 0 chr3 166671516 166671551 -60853027 + AT_rich Low_complexity Low_complexity 1 35 0 511 216 0 0 chr3 166673338 166673435 -60851143 - MER103 DNA DNA -49 117 21 263 316 49 67 chr3 166673743 166673968 -60850610 + L1MDa LINE L1 70 290 -6250 2121 223 83 55 chr3 166674541 166675560 -60849018 + L1MDa LINE L1 907 1911 -4629 6496 155 19 7 chr3 166675570 166677694 -60846884 + L1MA3 LINE L1 4151 6304 -1 6443 64 13 6 chr3 166677923 166679422 -60845156 - L1PA8 LINE L1 -14 6158 4510 22 35 0 0 chr3 166679907 166679936 -60844642 + AT_rich Low_complexity Low_complexity 1 29 0 309 287 93 13 chr3 166680122 166680272 -60844306 - L1MC4a LINE L1 -1925 5883 5722 427 353 62 30 chr3 166680752 166681152 -60843426 - L1MC4a LINE L1 -1071 5075 4663 2064 219 92 23 chr3 166683270 166683869 -60840709 + MER21B LTR ERV1 13 652 -211 1709 239 96 5 chr3 166684097 166684512 -60840066 - MLT2B1 LTR ERVL -66 454 2 2694 131 58 98 chr3 166684547 166685148 -60839430 + LTR19B LTR ERV1 1 577 -3 851 197 71 7 chr3 166685148 166685417 -60839161 - AluY SINE Alu -18 293 8 7142 48 9 5 chr3 166685684 166686653 -60837925 - L1PA3 LINE L1 -3 6152 5186 25 51 0 0 chr3 166686921 166686960 -60837618 + GC_rich Low_complexity Low_complexity 1 39 0 207 100 0 0 chr3 166687279 166687309 -60837269 + (CA)n Simple_repeat Simple_repeat 2 31 0 213 39 0 0 chr3 166687736 166687762 -60836816 + (TG)n Simple_repeat Simple_repeat 2 27 0 275 211 19 0 chr3 166688153 166688205 -60836373 + L1MEd LINE L1 972 1024 -5506 196 196 22 0 chr3 166688221 166688267 -60836311 - MIR SINE MIR -132 130 84 21 43 0 0 chr3 166688452 166688475 -60836103 + AT_rich Low_complexity Low_complexity 1 23 0 4501 129 29 7 chr3 166690330 166691080 -60833498 - L1PA11 LINE L1 0 6174 5408 3067 182 18 23 chr3 166691431 166692117 -60832461 + L1P LINE L1 4548 5229 -917 2001 287 31 116 chr3 166692528 166692969 -60831609 + L1P LINE L1 3867 4344 -1802 910 219 42 21 chr3 166692969 166693256 -60831322 - AluSx SINE Alu -5 297 5 2001 287 31 116 chr3 166693256 166693941 -60830637 + L1P LINE L1 4344 4897 -1249 916 205 135 4 chr3 166693941 166694200 -60830378 + MSTB LTR MaLR 6 298 -128 448 303 121 17 chr3 166696164 166696461 -60828117 + L1MEd LINE L1 1911 2238 -4302 302 211 129 94 chr3 166696472 166696643 -60827935 + L1MEd LINE L1 2305 2481 -4059 1486 247 61 23 chr3 166696646 166697124 -60827454 + L1ME1 LINE L1 5606 6101 -65 2264 118 3 0 chr3 166697321 166697627 -60826951 - AluSc SINE Alu 0 309 3 729 276 16 71 chr3 166697710 166697964 -60826614 + MLT1H LTR MaLR 51 290 -259 694 229 29 29 chr3 166699553 166699723 -60824855 - MER5B DNA MER1_type -8 170 1 535 306 181 20 chr3 166699734 166700126 -60824452 + L3 LINE CR1 948 1402 -175 623 262 24 12 chr3 166700624 166700792 -60823786 - MER5B DNA MER1_type -7 171 2 541 341 94 60 chr3 166700969 166701520 -60823058 + L3 LINE CR1 625 1194 -383 221 313 28 97 chr3 166701872 166702016 -60822562 + L3 LINE CR1 1443 1576 -1 369 301 59 20 chr3 166702138 166702291 -60822287 - MLT1J2 LTR MaLR 0 450 292 292 291 154 0 chr3 166703783 166703893 -60820685 - L2 LINE L2 -5 3267 3141 823 243 133 56 chr3 166703974 166704477 -60820101 - MLT1F LTR MaLR 0 542 1 2463 122 0 25 chr3 166706037 166706438 -60818140 - L1M1 LINE L1 -535 5769 5379 186 133 0 0 chr3 166707291 166707321 -60817257 + (CA)n Simple_repeat Simple_repeat 2 31 0 2206 178 39 12 chr3 166707660 166708076 -60816502 + Tigger2a DNA MER2_type 8 434 0 336 320 21 0 chr3 166708765 166708862 -60815716 + L2 LINE L2 3173 3271 -1 27 0 0 0 chr3 166709093 166709120 -60815458 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr3 166709463 166709492 -60815086 + AT_rich Low_complexity Low_complexity 1 29 0 622 174 37 37 chr3 166712353 166712514 -60812064 + HsTC2 DNA Tc2 1726 1886 -12 387 164 0 0 chr3 166713278 166713339 -60811239 - Tigger5 DNA MER2_type 0 2323 2263 262 226 0 0 chr3 166713357 166713410 -60811168 - Tigger5 DNA MER2_type -2268 55 3 216 97 0 0 chr3 166715137 166715168 -60809410 + (A)n Simple_repeat Simple_repeat 1 31 0 21 57 0 0 chr3 166715560 166715595 -60808983 + AT_rich Low_complexity Low_complexity 1 35 0 4649 122 26 7 chr3 166715605 166716321 -60808257 - L1PA16 LINE L1 -21 6145 5416 28 48 0 0 chr3 166717466 166717508 -60807070 + AT_rich Low_complexity Low_complexity 1 42 0 23 0 0 0 chr3 166718314 166718337 -60806241 + AT_rich Low_complexity Low_complexity 1 23 0 796 250 50 0 chr3 166719273 166719473 -60805105 - MER63A DNA MER1_type 0 210 1 1295 167 134 23 chr3 166719792 166720097 -60804481 - MER44D DNA MER2_type 0 609 1 222 37 0 0 chr3 166720161 166720188 -60804390 + (CA)n Simple_repeat Simple_repeat 2 28 0 25 0 0 0 chr3 166721550 166721575 -60803003 + AT_rich Low_complexity Low_complexity 1 25 0 204 267 0 0 chr3 166721917 166721962 -60802616 + L2 LINE L2 3261 3305 -8 2256 97 0 13 chr3 166722260 166722569 -60802009 + AluSg SINE Alu 1 305 -5 2526 68 0 0 chr3 166723221 166723530 -60801048 - AluY SINE Alu -2 309 1 30 69 0 0 chr3 166723627 166723685 -60800893 + AT_rich Low_complexity Low_complexity 1 58 0 336 238 60 0 chr3 166724140 166724224 -60800354 + MIR SINE MIR 172 260 -2 198 0 0 0 chr3 166725217 166725239 -60799339 + (CATA)n Simple_repeat Simple_repeat 1 22 0 229 271 141 12 chr3 166725844 166725929 -60798649 + L2 LINE L2 3175 3270 -2 34 0 0 0 chr3 166726397 166726431 -60798147 + AT_rich Low_complexity Low_complexity 1 34 0 370 184 0 26 chr3 166727972 166728048 -60796530 + MER116 DNA Mariner 1 74 -6 273 258 141 23 chr3 166729505 166729633 -60794945 - MIR SINE MIR -71 191 49 229 192 41 14 chr3 166729716 166729789 -60794789 + (TATATG)n Simple_repeat Simple_repeat 6 80 0 890 254 22 18 chr3 166730833 166731061 -60793517 + MIR SINE MIR 9 237 -25 6944 90 22 3 chr3 166734052 166735502 -60789076 + L1PA8 LINE L1 4305 5787 -385 6569 70 16 39 chr3 166735504 166737486 -60787092 + SVA Other Other 1 1386 0 2761 86 3 5 chr3 166737486 166737870 -60786708 + L1PA8 LINE L1 5777 6159 -13 23 78 0 0 chr3 166738060 166738111 -60786467 + AT_rich Low_complexity Low_complexity 1 51 0 22 70 0 0 chr3 166738233 166738276 -60786302 + AT_rich Low_complexity Low_complexity 1 43 0 1461 126 79 65 chr3 166739059 166739337 -60785241 - AluSx SINE Alu -25 287 6 1899 125 20 3 chr3 166739530 166739827 -60784751 - AluSq SINE Alu -11 302 1 373 317 35 7 chr3 166739924 166740066 -60784512 - L2 LINE L2 -7 3306 3161 191 353 48 24 chr3 166740791 166740958 -60783620 - L2 LINE L2 -1021 2293 2123 24 0 0 0 chr3 166741007 166741031 -60783547 + AT_rich Low_complexity Low_complexity 1 24 0 233 284 149 77 chr3 166741031 166741566 -60783012 - L2 LINE L2 -1219 2095 1522 252 130 0 0 chr3 166742541 166742587 -60781991 + (TG)n Simple_repeat Simple_repeat 2 47 0 408 311 117 0 chr3 166742792 166742972 -60781606 + MIR SINE MIR 57 257 -5 899 171 43 6 chr3 166743107 166743271 -60781307 - FRAM SINE Alu -13 163 1 31 68 0 0 chr3 166743330 166743389 -60781189 + AT_rich Low_complexity Low_complexity 1 59 0 378 0 0 0 chr3 166743473 166743515 -60781063 + (CA)n Simple_repeat Simple_repeat 2 43 0 293 350 79 41 chr3 166744400 166744691 -60779887 + MLT1J LTR MaLR 9 310 -201 21 57 0 0 chr3 166745764 166745799 -60778779 + AT_rich Low_complexity Low_complexity 1 35 0 2081 132 0 22 chr3 166745899 166746217 -60778361 - AluSx SINE Alu 0 312 2 1572 114 0 30 chr3 166746429 166746666 -60777912 - AluSq SINE Alu -82 231 2 1511 205 3 13 chr3 166746903 166747206 -60777372 - AluJb SINE Alu -12 300 1 27 0 0 0 chr3 166749783 166749810 -60774768 + AT_rich Low_complexity Low_complexity 1 27 0 439 300 128 35 chr3 166750034 166750261 -60774317 + MIR SINE MIR 1 248 -14 21 0 0 0 chr3 166750565 166750586 -60773992 + AT_rich Low_complexity Low_complexity 1 21 0 4319 81 2 20 chr3 166750804 166751294 -60773284 + L1PA8 LINE L1 5575 6053 -119 2356 100 0 0 chr3 166751294 166751593 -60772985 + AluSc SINE Alu 1 299 -10 4319 81 2 20 chr3 166751593 166751708 -60772870 + L1PA8 LINE L1 6053 6169 -3 6311 84 48 2 chr3 166752149 166753054 -60771524 + MER11B LTR ERVK 1 1075 -161 288 116 23 0 chr3 166753080 166753123 -60771455 + MSTA LTR MaLR 385 428 0 435 242 11 0 chr3 166753305 166753396 -60771182 + LTR16A LTR ERVL 357 448 -2 875 236 105 22 chr3 166753430 166753743 -60770835 + HAL1 LINE L1 1688 2026 -481 1238 87 11 16 chr3 166753747 166753932 -60770646 + MER11B LTR ERVK 1053 1236 0 223 357 54 16 chr3 166754132 166754317 -60770261 + L2 LINE L2 2379 2570 -744 226 111 0 0 chr3 166754484 166754520 -60770058 + MER58 DNA MER1_type 2374 2409 -11 * 482 276 17 0 chr3 166754509 166754625 -60769953 - MER58B DNA MER1_type -36 305 188 1306 183 8 12 chr3 166754740 166754992 -60769586 + L1MA4 LINE L1 5680 5930 -370 26 30 0 0 chr3 166755046 166755079 -60769499 + AT_rich Low_complexity Low_complexity 1 33 0 476 230 48 42 chr3 166755212 166755377 -60769201 + L1MB7 LINE L1 6018 6183 -1 210 322 46 11 chr3 166755907 166755994 -60768584 + L2 LINE L2 3209 3298 -15 2237 163 62 7 chr3 166757221 166757627 -60766951 + MSTA LTR MaLR 1 428 0 7578 29 0 0 chr3 166757662 166758612 -60765966 - L1PA4 LINE L1 -4 6151 5202 2452 40 0 0 chr3 166758612 166758912 -60765666 + L1PA4 LINE L1 4918 5217 -929 2119 98 11 3 chr3 166758951 166759237 -60765341 - AluSg1 SINE Alu -21 288 1 25 0 0 0 chr3 166760299 166760324 -60764254 + AT_rich Low_complexity Low_complexity 1 25 0 801 238 0 5 chr3 166760680 166760869 -60763709 - MER5A DNA MER1_type -1 188 1 248 324 81 9 chr3 166760977 166761088 -60763490 + MIR SINE MIR 124 242 -20 213 156 67 0 chr3 166761718 166761763 -60762815 + A-rich Low_complexity Low_complexity 4 51 0 705 148 14 28 chr3 166762056 166762198 -60762380 - L1MA3 LINE L1 -3 6302 6163 1785 164 0 0 chr3 166763681 166763944 -60760634 + AluSx SINE Alu 1 263 -49 898 238 108 49 chr3 166764638 166765185 -60759393 + L1MC5 LINE L1 7272 7850 -111 239 221 211 10 chr3 166765278 166765382 -60759196 - MLT1H LTR MaLR -4 545 421 2694 185 17 11 chr3 166765397 166765926 -60758652 - L1PB4 LINE L1 -3 6153 5622 1480 155 4 14 chr3 166765928 166766206 -60758372 + L1PB4 LINE L1 5343 5617 -539 22 35 0 0 chr3 166766349 166766378 -60758200 + AT_rich Low_complexity Low_complexity 1 29 0 188 204 23 23 chr3 166766745 166766789 -60757789 + L2 LINE L2 3263 3306 -7 261 0 0 0 chr3 166767097 166767126 -60757452 + (T)n Simple_repeat Simple_repeat 1 29 0 786 225 50 25 chr3 166767423 166767623 -60756955 - MER58C DNA MER1_type -1 214 10 411 281 128 12 chr3 166767646 166767810 -60756768 + MIR SINE MIR 26 208 -54 578 298 98 86 chr3 166768045 166768780 -60755798 + L2 LINE L2 2551 3312 -1 246 331 62 8 chr3 166768835 166768953 -60755625 - MIR3 SINE MIR -51 157 52 2882 148 48 56 chr3 166769033 166769600 -60754978 + MER68 LTR ERV1 1 562 0 252 402 31 8 chr3 166769803 166769930 -60754648 - MIR3 SINE MIR -35 173 44 532 274 0 0 chr3 166770391 166770504 -60754074 + MER81 DNA DNA 2 114 0 2290 84 10 3 chr3 166771113 166771410 -60753168 + AluY SINE Alu 1 299 -12 21 0 0 0 chr3 166771435 166771456 -60753122 + AT_rich Low_complexity Low_complexity 1 21 0 555 330 149 50 chr3 166772017 166772541 -60752037 + L3 LINE CR1 910 1485 -92 278 257 53 102 chr3 166774017 166774204 -60750374 - L1MC/D LINE L1 -1996 5812 5635 1718 154 100 9 chr3 166774518 166774771 -60749807 + MER46B DNA MER2_type 1 167 -2564 1398 171 26 108 chr3 166774771 166775150 -60749428 + MER7A DNA MER2_type 1 346 0 1718 154 100 9 chr3 166775150 166775227 -60749351 + MER46B DNA MER2_type 167 236 0 1147 179 0 10 chr3 166775564 166775759 -60748819 - AluSq SINE Alu -114 199 7 442 266 16 60 chr3 166775831 166776015 -60748563 - MER5A DNA MER1_type 0 189 14 558 285 112 70 chr3 166776430 166776995 -60747583 - L2 LINE L2 -4 3309 2716 476 237 0 0 chr3 166777108 166777205 -60747373 - MIR SINE MIR -164 98 2 572 336 80 17 chr3 166777210 166777499 -60747079 - L2 LINE L2 -593 2721 2415 324 326 58 0 chr3 166779759 166779845 -60744733 - L2 LINE L2 -1 3271 3181 249 196 143 0 chr3 166779874 166779930 -60744648 + L2 LINE L2 3245 3308 -5 204 229 0 83 chr3 166779958 166780006 -60744572 - L2 LINE L2 -91 3181 3138 588 320 82 4 chr3 166781607 166781838 -60742740 + L2 LINE L2 2447 2695 -619 246 248 46 119 chr3 166781859 166781968 -60742610 + MER91A DNA MER1_type 1 101 -95 474 313 143 24 chr3 166782007 166782453 -60742125 + L2 LINE L2 2713 3207 -106 692 292 51 24 chr3 166782632 166783002 -60741576 + L1ME4a LINE L1 5522 5901 -220 21 0 0 0 chr3 166783636 166783657 -60740921 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 166784435 166784458 -60740120 + AT_rich Low_complexity Low_complexity 1 23 0 216 143 0 0 chr3 166784742 166784784 -60739794 + (GA)n Simple_repeat Simple_repeat 1 42 0 749 167 52 100 chr3 166785696 166785906 -60738672 - MER20 DNA MER1_type 0 219 20 392 275 46 69 chr3 166786010 166786228 -60738350 - MER102b DNA MER1_type -18 323 111 352 269 60 55 chr3 166786357 166786539 -60738039 + L1MC5 LINE L1 7557 7739 -222 180 0 0 0 chr3 166786539 166786559 -60738019 + (CAGG)n Simple_repeat Simple_repeat 1 20 0 294 29 0 0 chr3 166786559 166786594 -60737984 + (CA)n Simple_repeat Simple_repeat 1 35 0 216 280 0 0 chr3 166788370 166788420 -60736158 + (CATA)n Simple_repeat Simple_repeat 4 53 0 2347 122 3 6 chr3 166788607 166788968 -60735610 + L1PA14 LINE L1 5802 6161 0 1698 142 14 7 chr3 166789440 166789721 -60734857 + AluSp SINE Alu 1 283 -30 241 143 57 71 chr3 166789831 166789971 -60734607 + (CACAC)n Simple_repeat Simple_repeat 3 140 0 24 0 0 0 chr3 166790434 166790458 -60734120 + AT_rich Low_complexity Low_complexity 1 24 0 2157 102 7 3 chr3 166790709 166791002 -60733576 + AluSx SINE Alu 1 294 -18 22 56 0 0 chr3 166793294 166793330 -60731248 + AT_rich Low_complexity Low_complexity 1 36 0 751 150 0 31 chr3 166793766 166793893 -60730685 + FRAM SINE Alu 23 145 -31 204 67 0 0 chr3 166793896 166793926 -60730652 + (TTAA)n Simple_repeat Simple_repeat 1 30 0 2353 83 0 16 chr3 166794001 166794314 -60730264 + AluSg1 SINE Alu 1 308 -1 1467 180 82 31 chr3 166794873 166795190 -60729388 - MER58B DNA MER1_type 0 341 9 185 360 50 0 chr3 166795412 166795512 -60729066 + MIR SINE MIR 60 164 -98 819 233 62 0 chr3 166797186 166797379 -60727199 + MER20 DNA MER1_type 1 205 -14 316 263 65 123 chr3 166799571 166799879 -60724699 - L1M2 LINE L1 -5875 974 685 395 247 53 53 chr3 166801011 166801161 -60723417 + L3b LINE CR1 1103 1252 -331 1095 39 15 0 chr3 166801932 166802062 -60722516 - AluY SINE Alu -179 132 1 523 254 110 29 chr3 166802694 166802867 -60721711 - LTR16C LTR ERVL -158 333 147 190 246 217 0 chr3 166803027 166803096 -60721482 + L2 LINE L2 2962 3045 -227 1098 256 75 81 chr3 166803295 166804151 -60720427 - L2 LINE L2 0 3313 2461 432 149 0 0 chr3 166805480 166805547 -60719031 + MER69 DNA AcHobo 1 67 -2459 271 228 22 11 chr3 166805695 166805787 -60718791 + MER69 DNA AcHobo 2381 2473 -53 22 70 0 0 chr3 166807728 166807771 -60716807 + AT_rich Low_complexity Low_complexity 1 43 0 292 330 37 9 chr3 166808164 166808273 -60716305 + MIR SINE MIR 1 112 -150 497 287 78 45 chr3 166808501 166808745 -60715833 - MLT1L LTR MaLR -346 269 18 260 127 18 0 chr3 166808802 166808857 -60715721 + CT-rich Low_complexity Low_complexity 1 56 0 183 80 0 0 chr3 166808866 166808891 -60715687 + (CA)n Simple_repeat Simple_repeat 2 26 0 879 259 114 68 chr3 166808895 166809751 -60714827 - HAL1 LINE L1 -285 2222 1327 990 287 92 62 chr3 166809779 166810271 -60714307 - HAL1 LINE L1 -1292 1215 686 2221 112 3 0 chr3 166810271 166810567 -60714011 - AluSx SINE Alu -15 297 1 990 287 92 62 chr3 166810567 166810914 -60713664 - HAL1 LINE L1 -1821 686 351 205 364 92 15 chr3 166811825 166812020 -60712558 - L2 LINE L2 -445 2869 2660 1796 115 0 0 chr3 166812100 166812344 -60712234 + AluSx SINE Alu 62 305 -7 28 0 0 0 chr3 166812620 166812648 -60711930 + AT_rich Low_complexity Low_complexity 1 28 0 2077 176 106 61 chr3 166814514 166815167 -60709411 - Charlie1 DNA MER1_type 0 2761 2080 401 200 0 12 chr3 166815171 166815256 -60709322 - Charlie1 DNA MER1_type -2608 153 70 382 259 254 5 chr3 166815266 166815471 -60709107 + MIR SINE MIR 1 256 -6 1302 224 118 81 chr3 166816015 166816547 -60708031 - MLT1G LTR MaLR 0 555 4 334 290 202 0 chr3 166818050 166818174 -60706404 - L2 LINE L2 -3 3310 3162 3542 126 2 0 chr3 166818178 166818712 -60705866 - L1PB1 LINE L1 0 6151 5617 2146 93 16 0 chr3 166818712 166819033 -60705545 + L1PB1 LINE L1 5284 5609 -542 181 216 59 0 chr3 166819195 166819246 -60705332 - L2 LINE L2 -548 2766 2713 256 270 58 73 chr3 166820215 166820352 -60704226 - MIR SINE MIR -59 203 69 7393 32 0 4 chr3 166820689 166821681 -60702897 - L1PA4 LINE L1 -3 6152 5158 6115 45 0 1 chr3 166821681 166822444 -60702134 + L1PA4 LINE L1 4412 5173 -973 400 104 85 199 chr3 166822946 166823157 -60701421 + MER53 DNA DNA 1 187 -2 254 266 250 0 chr3 166823249 166823377 -60701201 - MER5B DNA MER1_type 0 178 19 480 296 26 7 chr3 166823401 166823553 -60701025 + MER5B DNA MER1_type 1 155 -23 29 47 0 0 chr3 166823652 166823695 -60700883 + AT_rich Low_complexity Low_complexity 1 43 0 21 36 0 0 chr3 166823776 166823804 -60700774 + AT_rich Low_complexity Low_complexity 1 28 0 549 253 99 113 chr3 166824079 166824442 -60700136 - MLT1J LTR MaLR -109 402 45 247 331 66 83 chr3 166825796 166825977 -60698601 + MIR3 SINE MIR 26 203 -5 921 334 45 33 chr3 166826641 166827282 -60697296 + L1MEd LINE L1 4 652 -5467 640 103 28 28 chr3 166827460 166827567 -60697011 - L1 LINE L1 -1361 4785 4679 601 218 75 40 chr3 166827598 166827772 -60696806 + MIR SINE MIR 77 256 -6 256 309 12 0 chr3 166828637 166828718 -60695860 - L2 LINE L2 -1 3312 3231 2249 98 3 0 chr3 166829022 166829318 -60695260 + AluSq SINE Alu 1 297 -16 315 292 51 73 chr3 166829323 166829460 -60695118 + L2 LINE L2 3134 3267 -5 180 318 0 0 chr3 166829535 166829579 -60694999 - L2 LINE L2 -1 3271 3228 34 0 0 0 chr3 166830246 166830280 -60694298 + AT_rich Low_complexity Low_complexity 1 34 0 218 120 53 0 chr3 166830521 166830596 -60693982 + (TA)n Simple_repeat Simple_repeat 2 80 0 28 0 0 0 chr3 166830596 166830624 -60693954 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr3 166830933 166830967 -60693611 + AT_rich Low_complexity Low_complexity 1 34 0 207 0 0 0 chr3 166831837 166831860 -60692718 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 357 289 128 13 chr3 166833302 166833458 -60691120 - MIR SINE MIR -87 175 2 443 285 42 0 chr3 166835326 166835470 -60689108 + LTR40c LTR ERVL 89 238 -227 357 291 135 0 chr3 166835497 166835638 -60688940 - MIR SINE MIR -101 161 2 540 236 110 39 chr3 166835706 166835888 -60688690 + LTR40a LTR ERVL 307 501 -18 1632 214 60 10 chr3 166836364 166836747 -60687831 + L1MD2 LINE L1 5785 6186 -173 1869 161 0 20 chr3 166836800 166837098 -60687480 - AluJb SINE Alu -20 292 1 377 212 153 36 chr3 166837310 166837447 -60687131 - MIR SINE MIR -10 252 100 331 311 90 30 chr3 166837475 166837642 -60686936 - MIR SINE MIR -66 196 20 239 351 67 48 chr3 166837682 166837847 -60686731 + MIR3 SINE MIR 20 187 -21 286 233 0 41 chr3 166838970 166839043 -60685535 + MIR SINE MIR 19 88 -120 197 296 14 14 chr3 166839168 166839239 -60685339 + MIR3 SINE MIR 136 206 -2 6307 158 15 8 chr3 166840657 166841763 -60682815 - Tigger1 DNA MER2_type 0 2418 1305 4543 125 7 22 chr3 166841757 166842492 -60682086 - Tigger1 DNA MER2_type -1313 1105 382 * 371 326 52 49 chr3 166842804 166842993 -60681585 - MIR SINE MIR -66 142 8 579 132 11 11 chr3 166843615 166843706 -60680872 - Tigger7 DNA MER2_type -1 2486 2396 * 2403 181 50 37 chr3 166843700 166844218 -60680360 - Tigger7 DNA MER2_type -1961 526 2 208 293 143 14 chr3 166845431 166845571 -60679007 + MIR SINE MIR 104 261 -1 1313 215 41 49 chr3 166845749 166846120 -60678458 - MLT1A1 LTR MaLR -2 565 1 6032 139 20 12 chr3 166846252 166847814 -60676764 + L1PB1 LINE L1 4571 6148 -3 27 29 0 0 chr3 166848067 166848101 -60676477 + AT_rich Low_complexity Low_complexity 1 34 0 1165 224 103 3 chr3 166848357 166848669 -60675909 + MER2 DNA MER2_type 2 344 0 246 321 18 18 chr3 166848858 166848970 -60675608 + MER5A DNA MER1_type 4 115 -74 194 330 64 43 chr3 166848888 166848982 -60675596 - MER5A DNA MER1_type -21 168 73 * 4083 191 59 16 chr3 166849009 166850791 -60673787 - L1MB7 LINE L1 -51 6133 4272 921 173 5 60 chr3 166850828 166851013 -60673565 - FRAM SINE Alu -2 174 1 3867 230 53 48 chr3 166851019 166851720 -60672858 - L1MB7 LINE L1 -1908 4238 3542 1958 133 34 0 chr3 166851720 166852013 -60672565 - AluSx SINE Alu -9 303 1 3867 230 53 48 chr3 166852013 166852512 -60672066 - L1MB7 LINE L1 -2604 3542 3047 2445 20 13 16 chr3 166852512 166852816 -60671762 - AluYa5 SINE Alu -8 303 1 3867 230 53 48 chr3 166852816 166853466 -60671112 - L1MB7 LINE L1 -3099 3047 2341 25 65 0 0 chr3 166853546 166853592 -60670986 + AT_rich Low_complexity Low_complexity 1 46 0 1994 123 3 7 chr3 166854342 166854650 -60669928 + AluSx SINE Alu 1 307 0 713 289 23 12 chr3 166854846 166855102 -60669476 - MIR SINE MIR -1 261 3 194 341 37 37 chr3 166855415 166855550 -60669028 - L2 LINE L2 0 3313 3179 48 18 0 0 chr3 166856870 166856925 -60667653 + AT_rich Low_complexity Low_complexity 1 55 0 195 42 0 0 chr3 166857071 166857095 -60667483 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 29 0 0 0 chr3 166857821 166857850 -60666728 + AT_rich Low_complexity Low_complexity 1 29 0 2104 89 3 76 chr3 166858029 166858345 -60666233 + AluSp SINE Alu 1 293 -20 22 0 0 0 chr3 166858552 166858574 -60666004 + AT_rich Low_complexity Low_complexity 1 22 0 185 358 98 35 chr3 166858774 166858947 -60665631 + L2 LINE L2 2906 3089 -183 185 211 18 0 chr3 166860283 166860340 -60664238 + (CATA)n Simple_repeat Simple_repeat 3 60 0 778 298 122 41 chr3 166860608 166861500 -60663078 - L2 LINE L2 -1 3312 2340 410 202 54 0 chr3 166862181 166862349 -60662229 + (TA)n Simple_repeat Simple_repeat 1 177 0 216 0 0 0 chr3 166862354 166862378 -60662200 + (TTTA)n Simple_repeat Simple_repeat 3 26 0 598 335 45 4 chr3 166862506 166862775 -60661803 + L1ME3A LINE L1 5633 5912 -258 5604 123 118 145 chr3 166862787 166864384 -60660194 - pTR5 LTR ERV1 -143 2295 741 213 167 24 0 chr3 166864859 166864901 -60659677 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 27 29 0 0 chr3 166864950 166864984 -60659594 + AT_rich Low_complexity Low_complexity 1 34 0 315 246 98 33 chr3 166864984 166865106 -60659472 + MER5A DNA MER1_type 53 182 -7 25 31 0 0 chr3 166865197 166865229 -60659349 + AT_rich Low_complexity Low_complexity 1 32 0 569 280 93 27 chr3 166866397 166866622 -60657956 + MIR SINE MIR 23 262 0 34 42 0 0 chr3 166867630 166867678 -60656900 + AT_rich Low_complexity Low_complexity 1 48 0 1260 294 48 73 chr3 166867884 166868348 -60656230 + MER21B LTR ERV1 20 462 -401 2348 71 0 0 chr3 166868348 166868689 -60655889 - AluY SINE Alu 0 341 1 1260 294 48 73 chr3 166868689 166868936 -60655642 + MER21B LTR ERV1 462 714 -149 290 230 119 24 chr3 166869018 166869144 -60655434 - L1ME4a LINE L1 -5 6116 5979 256 287 43 61 chr3 166869550 166869623 -60654955 + L2 LINE L2 3185 3257 -56 5231 210 23 3 chr3 166869623 166871588 -60652990 - L1PA15 LINE L1 0 6165 4169 256 287 43 61 chr3 166871588 166871629 -60652949 + L2 LINE L2 3257 3297 -16 282 295 51 0 chr3 166872420 166872498 -60652080 - MIR SINE MIR -97 165 84 256 285 65 49 chr3 166872797 166872920 -60651658 + L1ME LINE L1 338 462 -5934 24 0 0 0 chr3 166873130 166873154 -60651424 + AT_rich Low_complexity Low_complexity 1 24 0 469 274 7 100 chr3 166873643 166873913 -60650665 + L1ME LINE L1 769 1013 -5396 2616 133 34 2 chr3 166873922 166874337 -60650241 + MSTA LTR MaLR 1 428 0 3838 163 38 6 chr3 166874337 166875024 -60649554 + MSTA-int LTR MaLR 1 709 -942 1979 137 60 23 chr3 166875202 166875553 -60649025 + THE1B LTR MaLR 1 364 0 7253 217 92 36 chr3 166875674 166878372 -60646206 + L1MB8 LINE L1 2327 4875 -1563 2266 107 3 0 chr3 166878372 166878672 -60645906 + AluSp SINE Alu 1 301 -12 7253 217 92 36 chr3 166878672 166878789 -60645789 + L1MB8 LINE L1 4875 4984 -1454 180 0 0 0 chr3 166878789 166878809 -60645769 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 7253 217 92 36 chr3 166878809 166879098 -60645480 + L1MB8 LINE L1 4984 5256 -1182 1484 200 25 0 chr3 166879098 166879373 -60645205 + AluJo SINE Alu 1 282 -30 7253 217 92 36 chr3 166879373 166880119 -60644459 + L1MB8 LINE L1 5256 6433 -5 1559 279 34 5 chr3 166880125 166880684 -60643894 + L1M4 LINE L1 2315 2889 -3257 943 243 35 72 chr3 166880701 166881075 -60643503 + MER57A LTR ERV1 42 401 -2 423 270 103 17 chr3 166881083 166881257 -60643321 + MER57A-int LTR ERV1 6 194 -7343 520 258 0 15 chr3 166881901 166882008 -60642570 + MER57A-int LTR ERV1 301 407 -4529 517 29 29 0 chr3 166882008 166882077 -60642501 - L1PA6 LINE L1 -4 6150 6080 520 258 0 15 chr3 166882077 166882101 -60642477 + MER57A-int LTR ERV1 407 430 -4506 483 187 22 0 chr3 166882268 166882359 -60642219 + Tigger4(Zombi) DNA MER2_type 2 94 -2637 * 4543 150 36 4 chr3 166882326 166883107 -60641471 + Tigger4(Zombi) DNA MER2_type 1841 2646 -85 2991 160 34 9 chr3 166883107 166883643 -60640935 + Tigger1 DNA MER2_type 1 549 -1869 2037 124 19 3 chr3 166883644 166883966 -60640612 + Tigger1 DNA MER2_type 1505 1831 -587 24 77 0 0 chr3 166884509 166884561 -60640017 + AT_rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr3 166885098 166885120 -60639458 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 166885275 166885296 -60639282 + AT_rich Low_complexity Low_complexity 1 21 0 639 298 183 11 chr3 166885796 166886320 -60638258 - L1MC4a LINE L1 -1904 5904 5291 25 0 0 0 chr3 166886330 166886355 -60638223 + AT_rich Low_complexity Low_complexity 1 25 0 1637 176 10 3 chr3 166886401 166886691 -60637887 - AluJb SINE Alu -20 292 1 206 31 0 31 chr3 166887246 166887278 -60637300 + (CA)n Simple_repeat Simple_repeat 2 32 0 340 290 89 40 chr3 166887308 166887683 -60636895 - L1ME4a LINE L1 -246 5875 5467 45 69 0 0 chr3 166888362 166888449 -60636129 + AT_rich Low_complexity Low_complexity 1 87 0 2449 52 7 3 chr3 166890220 166890526 -60634052 - AluY SINE Alu -4 307 1 3198 105 58 6 chr3 166891185 166891671 -60632907 + MER9 LTR ERVK 1 511 0 663 266 130 61 chr3 166891938 166892356 -60632222 - L1ME LINE L1 -4249 2012 1624 1450 197 3 32 chr3 166892356 166892640 -60631938 - AluJo SINE Alu -25 287 12 663 266 130 61 chr3 166892640 166893320 -60631258 - L1ME LINE L1 -4637 1624 667 2171 164 24 51 chr3 166893337 166893752 -60630826 + MSTB LTR MaLR 1 404 -22 678 90 70 0 chr3 166893737 166893837 -60630741 + MSTB LTR MaLR 320 426 0 * 198 0 0 0 chr3 166893896 166893918 -60630660 + (T)n Simple_repeat Simple_repeat 1 22 0 1735 212 24 51 chr3 166894281 166894696 -60629882 + MSTB LTR MaLR 1 404 -22 560 133 71 0 chr3 166894681 166894779 -60629799 + MSTB LTR MaLR 320 424 -2 * 189 0 0 0 chr3 166894841 166894862 -60629716 + (T)n Simple_repeat Simple_repeat 1 21 0 407 322 43 78 chr3 166895128 166895473 -60629105 - L1ME LINE L1 -5579 491 159 1984 201 66 5 chr3 166895489 166895881 -60628697 - MSTB LTR MaLR -10 416 1 8338 186 12 49 chr3 166895881 166897591 -60626987 - MSTB-int LTR MaLR 0 1651 5 2301 183 9 40 chr3 166897611 166898038 -60626540 - MSTB LTR MaLR -12 414 1 496 258 15 8 chr3 166898049 166898181 -60626397 - L1ME LINE L1 -5925 145 13 267 365 172 0 chr3 166898196 166898440 -60626138 - L3 LINE CR1 -140 1437 1152 218 105 53 0 chr3 166898525 166898563 -60626015 - L3 LINE CR1 -576 1001 962 645 321 85 28 chr3 166899383 166899735 -60624843 - L3 LINE CR1 -805 772 401 1423 218 91 32 chr3 166899882 166900322 -60624256 + MLT1C LTR MaLR 2 467 0 257 205 218 0 chr3 166900943 166901021 -60623557 - MIR SINE MIR -128 134 40 218 204 0 0 chr3 166902105 166902154 -60622424 + (TA)n Simple_repeat Simple_repeat 2 50 0 639 316 83 36 chr3 166902321 166902682 -60621896 - L2 LINE L2 -19 3294 2917 225 65 0 0 chr3 166902691 166902722 -60621856 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 205 263 53 0 chr3 166904307 166904364 -60620214 + L2 LINE L2 3213 3272 0 21 57 0 0 chr3 166904517 166904552 -60620026 + AT_rich Low_complexity Low_complexity 1 35 0 264 270 169 0 chr3 166904749 166904838 -60619740 + L2 LINE L2 3199 3302 -11 23 0 0 0 chr3 166906028 166906051 -60618527 + AT_rich Low_complexity Low_complexity 1 23 0 1884 161 50 3 chr3 166906516 166906839 -60617739 - MER2 DNA MER2_type 0 345 8 340 284 18 28 chr3 166907172 166907281 -60617297 - MER5B DNA MER1_type -3 175 68 1505 198 24 46 chr3 166908605 166908978 -60615600 + MLT1A1 LTR MaLR 1 365 0 3143 65 29 34 chr3 166909110 166909556 -60615022 - MLT2A1 LTR ERVL 0 444 1 742 324 65 53 chr3 166910088 166910582 -60613996 + L3 LINE CR1 922 1421 -156 289 325 0 65 chr3 166911262 166911431 -60613147 + MIR SINE MIR 103 260 -2 526 275 121 11 chr3 166912214 166912396 -60612182 + L2 LINE L2 2764 2965 -349 21 57 0 0 chr3 166912534 166912569 -60612009 + AT_rich Low_complexity Low_complexity 1 35 0 1783 154 10 27 chr3 166913643 166913936 -60610642 + AluSx SINE Alu 1 288 -24 197 370 183 14 chr3 166914361 166915206 -60609372 + L2 LINE L2 1614 2601 -713 1973 129 47 50 chr3 166915581 166915944 -60608634 + THE1B LTR MaLR 1 362 -2 199 323 68 50 chr3 166916010 166916171 -60608407 + L2 LINE L2 3132 3295 -18 808 157 0 37 chr3 166916173 166916307 -60608271 - FLAM_C SINE Alu -4 129 1 1531 196 3 46 chr3 166916966 166917292 -60607286 + AluJo SINE Alu 1 312 0 204 37 0 0 chr3 166917434 166917441 -60607137 + (A)n Simple_repeat Simple_repeat 1 7 -20 690 308 6 57 chr3 166917441 166917759 -60606819 + AluJo SINE Alu 1 302 0 204 37 0 0 chr3 166917759 166917778 -60606800 + (A)n Simple_repeat Simple_repeat 6 27 0 546 173 9 0 chr3 166918155 166918265 -60606313 - L1MB7 LINE L1 -5 6179 6069 318 336 39 0 chr3 166918928 166919032 -60605546 + MER20B DNA MER1_type 56 163 -620 728 297 9 14 chr3 166919361 166919573 -60605005 + MIR SINE MIR 2 212 -50 185 225 113 38 chr3 166919674 166919754 -60604824 + MIR SINE MIR 68 153 -109 1573 125 59 3 chr3 166919755 166920044 -60604534 + L1MB1 LINE L1 5857 6161 -7 491 161 86 0 chr3 166920794 166920875 -60603703 + MER2 DNA MER2_type 1 88 -257 3272 158 43 4 chr3 166920886 166921438 -60603140 - MER6A DNA MER2_type 0 605 32 1485 138 24 8 chr3 166921444 166921690 -60602888 + MER2 DNA MER2_type 96 345 0 228 327 0 0 chr3 166921874 166921929 -60602649 - MIR SINE MIR -157 105 51 423 245 19 0 chr3 166922067 166922173 -60602405 + MER45A DNA AcHobo 71 178 0 186 133 0 0 chr3 166922552 166922582 -60601996 + (GGGAGA)n Simple_repeat Simple_repeat 6 35 0 228 250 0 0 chr3 166923217 166923277 -60601301 + T-rich Low_complexity Low_complexity 1 60 0 344 288 0 0 chr3 166923539 166923612 -60600966 - MER63A DNA MER1_type 0 210 138 262 102 220 0 chr3 166923949 166924008 -60600570 + MER5B DNA MER1_type 107 178 0 1682 110 15 42 chr3 166924073 166924336 -60600242 - LTR14 LTR ERVK -292 256 1 631 254 15 0 chr3 166924336 166924466 -60600112 - MER5A DNA MER1_type -56 133 2 278 355 45 41 chr3 166924472 166924717 -60599861 - L2 LINE L2 -1667 1647 1402 539 191 60 48 chr3 166925258 166925426 -60599152 - L1ME LINE L1 -347 5817 5648 4684 249 125 16 chr3 166925427 166928069 -60596509 - L1ME LINE L1 -452 5781 2831 * 39635 74 7 8 chr3 166928063 166934220 -60590358 - L1PA6 LINE L1 0 6154 1 531 248 31 6 chr3 166934231 166934392 -60590186 - L1ME LINE L1 -3379 2836 2672 6206 207 20 12 chr3 166934392 166935844 -60588734 - L1 LINE L1 -2072 4074 2612 304 313 49 35 chr3 166935850 166936301 -60588277 - L1ME LINE L1 -4320 2076 1578 1765 222 79 68 chr3 166936331 166937838 -60586740 - L1MDb LINE L1 -876 5664 1174 757 242 21 5 chr3 166938065 166938251 -60586327 + MER5A DNA MER1_type 1 189 0 644 234 59 106 chr3 166938462 166938735 -60585843 - MIR SINE MIR 0 262 3 442 223 19 0 chr3 166940002 166940105 -60584473 - MSTC LTR MaLR 0 428 324 325 189 2 0 chr3 166940107 166940169 -60584409 - MSTD LTR MaLR -217 148 83 16698 160 26 5 chr3 166940446 166944642 -60579936 + L1 LINE L1 15 4316 -3249 4411 174 11 5 chr3 166944645 166945587 -60578991 + L1 LINE L1 5546 6492 -1073 2573 117 3 5 chr3 166945587 166945963 -60578615 - THE1C LTR MaLR 0 375 1 8530 130 42 12 chr3 166945963 166947347 -60577231 - THE1C-int LTR MaLR 0 1580 155 876 164 15 14 chr3 166947564 166947897 -60576681 - MLT1B LTR MaLR -2 388 1 1187 209 32 19 chr3 166948160 166948471 -60576107 - Charlie1 DNA MER1_type -386 2375 2061 386 216 91 0 chr3 166948452 166948540 -60576038 - Charlie1 DNA MER1_type -2608 153 58 * 622 289 16 37 chr3 166948552 166948794 -60575784 + MIR SINE MIR 7 243 -19 264 321 0 0 chr3 166949076 166949160 -60575418 - MER5B DNA MER1_type -74 104 21 296 320 46 51 chr3 166949189 166949364 -60575214 - MER5B DNA MER1_type 0 178 5 9272 189 30 12 chr3 166949727 166952315 -60572263 - L1MA9 LINE L1 -7 7724 5185 255 31 0 0 chr3 166952315 166952347 -60572231 + (TTG)n Simple_repeat Simple_repeat 3 34 0 9272 189 30 12 chr3 166952347 166952494 -60572084 - L1MA9 LINE L1 -2546 5185 5042 1745 141 74 47 chr3 166952494 166952857 -60571721 + THE1C LTR MaLR 3 375 0 9272 189 30 12 chr3 166952857 166953229 -60571349 - L1MA9 LINE L1 -2689 5042 4555 459 192 96 0 chr3 166953234 166953338 -60571240 - FLAM_A SINE Alu -6 136 23 1459 208 3 16 chr3 166953355 166953720 -60570858 - L1MA9 LINE L1 -3019 4546 4187 492 200 0 43 chr3 166953767 166953882 -60570696 + FRAM SINE Alu 67 176 0 478 211 0 10 chr3 166953884 166953993 -60570585 - L1M4 LINE L1 -3386 2964 2857 1178 217 8 25 chr3 166954003 166954243 -60570335 + AluJo SINE Alu 1 236 -76 411 229 0 10 chr3 166954271 166954367 -60570211 - L1MA9 LINE L1 -3386 4179 4085 * 2514 239 49 30 chr3 166954363 166955674 -60568904 - L1MA9 LINE L1 -3705 3860 2547 2070 133 74 17 chr3 166955679 166956032 -60568546 - THE1C LTR MaLR 0 375 3 6805 140 164 27 chr3 166956032 166956212 -60568366 - THE1C-int LTR MaLR -1 1579 1425 2206 119 0 0 chr3 166956212 166956514 -60568064 + AluSc SINE Alu 1 302 -7 6805 140 164 27 chr3 166956514 166957721 -60566857 - THE1C-int LTR MaLR -155 1425 2 2258 143 11 19 chr3 166957722 166958100 -60566478 - THE1C LTR MaLR 0 375 1 812 244 43 110 chr3 166958100 166958388 -60566190 - L1M4 LINE L1 -4648 1633 1406 4890 50 7 0 chr3 166958388 166958990 -60565588 - L1PA5 LINE L1 0 6154 5549 812 244 43 110 chr3 166958990 166959284 -60565294 - L1M4 LINE L1 -4875 1406 1094 8221 212 26 67 chr3 166959446 166961385 -60563193 + L1P4 LINE L1 2580 4323 -1842 342 0 0 0 chr3 166961385 166961423 -60563155 + (CA)n Simple_repeat Simple_repeat 2 39 0 8221 212 26 67 chr3 166961423 166962690 -60561888 + L1P4 LINE L1 4323 5640 -525 1176 173 34 25 chr3 166962695 166962932 -60561646 + THE1C-int LTR MaLR 536 774 -806 * 3796 100 5 7 chr3 166962920 166963478 -60561100 + THE1C-int LTR MaLR 1024 1580 0 2013 96 17 118 chr3 166963478 166963824 -60560754 + THE1C LTR MaLR 1 300 -75 6791 69 7 0 chr3 166963824 166965055 -60559523 + L1PA7 LINE L1 4914 6154 0 2013 96 17 118 chr3 166965055 166965125 -60559453 + THE1C LTR MaLR 300 375 0 1359 275 78 31 chr3 166965223 166965955 -60558623 - L1M4c LINE L1 -4160 2223 1339 2406 73 10 3 chr3 166965955 166966256 -60558322 - AluY SINE Alu -8 303 1 1359 275 78 31 chr3 166966256 166966591 -60557987 - L1M4c LINE L1 -5044 1339 1021 417 361 47 16 chr3 166967260 166967623 -60556955 - L1M4c LINE L1 -5724 589 216 972 276 65 33 chr3 166967634 166967924 -60556654 - L1ME3 LINE L1 0 6162 5883 1518 242 94 33 chr3 166967924 166968411 -60556167 + MLT2B1 LTR ERVL 2 518 -2 972 276 65 33 chr3 166968411 166968663 -60555915 - L1ME3 LINE L1 -279 5883 5603 912 271 49 61 chr3 166969007 166969416 -60555162 + MLT1I LTR MaLR 1 404 -5 2007 133 7 3 chr3 166971623 166971925 -60552653 + AluSx SINE Alu 1 303 -9 212 380 80 25 chr3 166971957 166972120 -60552458 + MIR3 SINE MIR 32 203 -5 49 43 0 0 chr3 166972269 166972339 -60552239 + AT_rich Low_complexity Low_complexity 1 70 0 188 98 0 24 chr3 166972341 166972382 -60552196 + (TAAA)n Simple_repeat Simple_repeat 3 42 0 28 0 0 0 chr3 166972383 166972411 -60552167 + AT_rich Low_complexity Low_complexity 1 28 0 1377 86 0 91 chr3 166972720 166972963 -60551615 - MLT2A1 LTR ERVL -1 443 223 415 280 78 44 chr3 166973278 166973639 -60550939 + L1MEd LINE L1 104 476 -5643 351 234 99 23 chr3 166974288 166974459 -60550119 + Harlequin LTR ERV1 187 370 -6279 472 314 32 28 chr3 166974637 166974889 -60549689 + Harlequin LTR ERV1 718 970 -6815 746 315 81 20 chr3 166975130 166975736 -60548842 + Harlequin LTR ERV1 1290 1932 -5853 456 204 109 22 chr3 166975736 166975873 -60548705 + LTR18B LTR ERVL 347 495 -119 1358 308 19 11 chr3 166975898 166976528 -60548050 + Harlequin LTR ERV1 4835 5469 -2316 350 60 0 0 chr3 166976576 166976626 -60547952 - Alu SINE Alu 0 301 252 345 331 0 0 chr3 166976788 166976933 -60547645 + Harlequin LTR ERV1 2751 2895 -4001 267 309 0 0 chr3 166977155 166977249 -60547329 + Harlequin LTR ERV1 3034 3127 -3769 2134 114 0 0 chr3 166977728 166978086 -60546492 + AluSc SINE Alu 1 358 0 7445 36 1 0 chr3 166978578 166979573 -60545005 + L1PA5 LINE L1 5151 6146 -8 1588 222 0 9 chr3 166979824 166980144 -60544434 + MST-int LTR MaLR 742 1058 -593 2685 26 0 3 chr3 166980183 166980489 -60544089 + AluY SINE Alu 1 305 -6 2691 78 98 5 chr3 166980717 166981127 -60543451 + LTR7 LTR ERV1 1 448 -2 11188 90 35 16 chr3 166981129 166982858 -60541720 + HERVH LTR ERV1 1 1763 -5950 752 216 40 25 chr3 166983520 166983719 -60540859 - MER20 DNA MER1_type -1 218 17 592 280 22 16 chr3 166984697 166984879 -60539699 - MIR SINE MIR -10 252 70 1757 177 35 21 chr3 166986070 166986409 -60538169 - MER2 DNA MER2_type 0 344 1 1299 122 17 50 chr3 166988661 166988899 -60535679 - LTR5 LTR ERVK 0 969 740 199 244 0 0 chr3 166989756 166989797 -60534781 - MIR SINE MIR -63 199 159 1158 151 48 0 chr3 166989797 166990003 -60534575 - MSTB1 LTR MaLR 0 432 217 2057 153 8 8 chr3 166990003 166990370 -60534208 + MST-int LTR MaLR 95 461 -1190 2276 78 0 0 chr3 166990370 166990651 -60533927 - AluY SINE Alu -8 303 23 461 221 76 0 chr3 166990795 166990926 -60533652 + MST-int LTR MaLR 455 595 -1056 431 106 30 14 chr3 166990926 166991017 -60533561 + MSTB1 LTR MaLR 282 432 0 244 264 131 53 chr3 166992346 166992595 -60531983 - L2 LINE L2 -219 3053 2776 408 320 78 4 chr3 166992634 166992865 -60531713 + L2 LINE L2 1326 1573 -1741 401 245 7 56 chr3 166993102 166993245 -60531333 - MER96B DNA MER1_type? -281 136 1 198 379 0 0 chr3 166993248 166993314 -60531264 + L2 LINE L2 1735 1800 -1514 23 0 0 0 chr3 166994059 166994082 -60530496 + AT_rich Low_complexity Low_complexity 1 23 0 43 101 0 0 chr3 166994340 166994469 -60530109 + AT_rich Low_complexity Low_complexity 1 129 0 224 350 110 12 chr3 166994772 166994935 -60529643 + MIR SINE MIR 8 186 -76 321 258 65 24 chr3 166995093 166995217 -60529361 + L1MC4a LINE L1 5757 5885 -1923 23 78 0 0 chr3 166995730 166995781 -60528797 + AT_rich Low_complexity Low_complexity 1 51 0 21 36 0 0 chr3 166995812 166995840 -60528738 + AT_rich Low_complexity Low_complexity 1 28 0 2272 188 31 5 chr3 166998097 166998512 -60526066 - MSTB LTR MaLR 0 426 1 2557 85 122 5 chr3 166998644 166999045 -60525533 - LTR7 LTR ERV1 -2 448 1 2205 99 56 13 chr3 166999045 166999419 -60525159 - HERVH LTR ERV1 0 7713 7324 1417 107 19 0 chr3 166999419 166999635 -60524943 - HERVH LTR ERV1 -1894 5819 5600 4089 143 0 1 chr3 166999636 167000299 -60524279 - HERVH LTR ERV1 -2564 5149 4488 5267 119 2 6 chr3 167000300 167001158 -60523420 - HERVH LTR ERV1 -3719 3994 3140 * 13758 104 17 35 chr3 167001154 167003879 -60520699 - HERVH LTR ERV1 -4728 2985 1 2705 76 98 10 chr3 167003881 167004291 -60520287 - LTR7 LTR ERV1 -2 448 3 2777 137 9 2 chr3 167004545 167004970 -60519608 + MSTA LTR MaLR 1 428 0 1408 182 75 15 chr3 167005378 167005713 -60518865 - L1MA9 LINE L1 0 6312 5958 21 0 0 0 chr3 167005967 167005988 -60518590 + AT_rich Low_complexity Low_complexity 1 21 0 476 250 123 17 chr3 167006000 167006236 -60518342 - L1ME3A LINE L1 -277 5893 5633 1458 87 0 0 chr3 167006657 167006864 -60517714 + L1MA1 LINE L1 6090 6296 -6 25 0 0 0 chr3 167006864 167006889 -60517689 + AT_rich Low_complexity Low_complexity 1 25 0 338 338 105 9 chr3 167006894 167007104 -60517474 + MIR SINE MIR 20 249 -13 252 269 0 0 chr3 167007211 167007304 -60517274 + (TATG)n Simple_repeat Simple_repeat 4 96 0 943 285 126 31 chr3 167007451 167008196 -60516382 + L2 LINE L2 2326 3183 -130 2502 70 0 0 chr3 167008196 167008497 -60516081 - AluY SINE Alu -10 301 1 943 285 126 31 chr3 167008497 167008641 -60515937 + L2 LINE L2 3183 3312 -1 265 230 81 11 chr3 167008790 167008877 -60515701 - L1MDa LINE L1 -5653 887 795 227 286 88 22 chr3 167009148 167009239 -60515339 + MIR SINE MIR 2 98 -164 8978 43 3 3 chr3 167010588 167011659 -60512919 - MER11C LTR ERVK 0 1071 1 4109 261 19 47 chr3 167011883 167012949 -60511629 + L1PA12 LINE L1 7 1042 -6539 187 297 14 27 chr3 167013898 167013972 -60510606 - MIR3 SINE MIR -1 207 135 31 0 0 0 chr3 167014333 167014364 -60510214 + AT_rich Low_complexity Low_complexity 1 31 0 2428 97 0 0 chr3 167015305 167015613 -60508965 - AluSg SINE Alu -2 308 1 364 327 101 0 chr3 167015772 167015940 -60508638 + MIR SINE MIR 7 191 -71 438 244 0 0 chr3 167016379 167016494 -60508084 - L1MD2 LINE L1 -171 6188 6074 402 282 84 15 chr3 167017130 167017261 -60507317 - MIR SINE MIR -45 217 78 2253 124 0 0 chr3 167017396 167017694 -60506884 + AluSq SINE Alu 1 298 -15 365 270 52 23 chr3 167017895 167018069 -60506509 - L1MEd LINE L1 -5468 651 473 1234 285 55 57 chr3 167018698 167019450 -60505128 - HERVI LTR ERV1 -138 7647 6898 16140 69 4 3 chr3 167019589 167021868 -60502710 + L1P LINE L1 1051 3331 -2815 188 358 42 25 chr3 167022612 167022732 -60501846 + MIR3 SINE MIR 75 196 -12 363 311 80 19 chr3 167022979 167023191 -60501387 + L1ME LINE L1 5600 5824 -297 22 80 0 0 chr3 167023252 167023302 -60501276 + AT_rich Low_complexity Low_complexity 1 50 0 335 80 0 0 chr3 167023426 167023476 -60501102 - Alu SINE Alu -5 297 248 23 78 0 0 chr3 167023845 167023896 -60500682 + AT_rich Low_complexity Low_complexity 1 51 0 629 124 0 0 chr3 167023960 167024057 -60500521 + L1P LINE L1 1 97 -6049 1009 178 139 28 chr3 167024199 167024486 -60500092 - LTR10A LTR ERV1 -290 319 1 3118 225 11 3 chr3 167024541 167025287 -60499291 - MSTD-int LTR MaLR -915 767 33 1645 210 17 37 chr3 167025287 167025691 -60498887 - MSTD LTR MaLR 0 396 1 21 0 0 0 chr3 167027323 167027344 -60497234 + AT_rich Low_complexity Low_complexity 1 21 0 7274 114 15 9 chr3 167027444 167028530 -60496048 + HERVS71 LTR ERV1 2145 3236 -5742 5469 127 38 6 chr3 167028514 167029356 -60495222 + HERVS71 LTR ERV1 4805 5673 -3305 * 2675 121 12 2 chr3 167029355 167029767 -60494811 + HERVS71 LTR ERV1 6070 6485 -2493 * 3461 104 56 9 chr3 167029870 167030406 -60494172 - HERVS71 LTR ERV1 -8414 564 4 4467 47 13 2 chr3 167030408 167030960 -60493618 - LTR6B LTR ERV1 0 558 1 756 306 10 27 chr3 167030965 167031339 -60493239 - MLT-int LTR MaLR -476 1259 841 554 105 37 20 chr3 167031370 167031477 -60493101 - LTR10A LTR ERV1 0 609 458 247 200 40 0 chr3 167031584 167031634 -60492944 + MER5A DNA MER1_type 137 188 -1 7689 128 9 3 chr3 167033453 167034614 -60489964 + HERVS71 LTR ERV1 910 2076 -6902 277 221 35 23 chr3 167034751 167034837 -60489741 + MLT1H LTR MaLR 71 157 -392 567 267 77 45 chr3 167035632 167035853 -60488725 + MLT1H LTR MaLR 63 290 -259 21 0 0 0 chr3 167036328 167036349 -60488229 + AT_rich Low_complexity Low_complexity 1 21 0 276 312 0 0 chr3 167036724 167036801 -60487777 + (TATATG)n Simple_repeat Simple_repeat 3 79 0 212 341 24 12 chr3 167037129 167037211 -60487367 + MIR SINE MIR 57 139 -123 807 192 42 18 chr3 167037467 167037634 -60486944 - MER5A DNA MER1_type -12 177 7 631 278 13 38 chr3 167037848 167038025 -60486553 + MER5A DNA MER1_type 9 172 -6 587 225 25 8 chr3 167038030 167038150 -60486428 - MER5B DNA MER1_type 0 178 57 359 169 0 28 chr3 167038151 167038222 -60486356 - L1MC1 LINE L1 -15 6318 6250 289 274 0 0 chr3 167038240 167038302 -60486276 + MER5B DNA MER1_type 114 175 -3 269 320 102 5 chr3 167038918 167039115 -60485463 + L1MCc LINE L1 1047 1262 -5161 474 221 66 71 chr3 167039169 167039395 -60485183 - L1MC4a LINE L1 -437 7371 7147 712 266 36 9 chr3 167039456 167039678 -60484900 - L1MC4 LINE L1 -1055 6987 6760 191 204 20 0 chr3 167040803 167040852 -60483726 + CT-rich Low_complexity Low_complexity 3 52 0 22 56 0 0 chr3 167041817 167041853 -60482725 + AT_rich Low_complexity Low_complexity 1 36 0 399 296 146 62 chr3 167041916 167042508 -60482070 + L1ME4a LINE L1 5254 5895 -226 235 345 134 6 chr3 167043113 167043284 -60481294 + L2 LINE L2 1963 2155 -1159 232 227 30 0 chr3 167043345 167043411 -60481167 - HAL1 LINE L1 0 2507 2440 662 213 35 41 chr3 167043464 167043778 -60480800 - L1M4 LINE L1 -1529 4617 4306 2297 166 37 11 chr3 167043793 167044227 -60480351 - MER65A LTR ERV1 0 445 1 1873 240 22 7 chr3 167044227 167044689 -60479889 - MER65A-int LTR ERV1 0 4871 4403 1726 241 76 11 chr3 167044662 167045122 -60479456 - MER65A-int LTR ERV1 -779 4092 3603 * 1991 207 109 78 chr3 167045290 167046020 -60478558 - MER31-int LTR ERV1 -1137 4694 3077 31 76 0 0 chr3 167046179 167046245 -60478333 + AT_rich Low_complexity Low_complexity 1 66 0 548 219 67 3 chr3 167047436 167047591 -60476987 - MER45A DNA AcHobo 0 178 5 22 88 0 0 chr3 167047915 167047972 -60476606 + AT_rich Low_complexity Low_complexity 1 57 0 670 260 40 0 chr3 167048067 167048217 -60476361 + FRAM SINE Alu 1 156 -10 2521 196 240 67 chr3 167048758 167049625 -60474953 + LTR28 LTR ERV1 4 1020 0 263 301 19 29 chr3 167049682 167049785 -60474793 - MIR SINE MIR -109 153 52 216 0 0 0 chr3 167049826 167049850 -60474728 + (A)n Simple_repeat Simple_repeat 1 24 0 216 0 0 0 chr3 167050378 167050402 -60474176 + (A)n Simple_repeat Simple_repeat 1 24 0 493 301 89 20 chr3 167050417 167050620 -60473958 - MIR SINE MIR -26 236 20 22 35 0 0 chr3 167051215 167051244 -60473334 + AT_rich Low_complexity Low_complexity 1 29 0 1396 160 73 84 chr3 167051675 167052043 -60472535 - THE1B LTR MaLR 0 364 1 195 100 0 0 chr3 167052505 167052535 -60472043 + (A)n Simple_repeat Simple_repeat 1 30 0 705 201 104 34 chr3 167053308 167053576 -60471002 + L1MC4 LINE L1 7751 8037 -5 303 104 0 60 chr3 167054060 167054127 -60470451 + MLT2B1 LTR ERVL 458 520 0 25 31 0 0 chr3 167054744 167054776 -60469802 + AT_rich Low_complexity Low_complexity 1 32 0 205 28 0 56 chr3 167055023 167055059 -60469519 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 620 325 93 16 chr3 167055181 167055520 -60469058 - L2 LINE L2 -161 3152 2777 280 349 26 33 chr3 167056202 167056354 -60468224 - MIR SINE MIR 0 262 112 21 0 0 0 chr3 167057124 167057145 -60467433 + AT_rich Low_complexity Low_complexity 1 21 0 944 193 30 0 chr3 167057309 167057506 -60467072 + L1PBa LINE L1 2 204 -6659 * 9753 137 44 8 chr3 167057494 167060532 -60464046 + L1PBa LINE L1 625 3900 -2962 240 35 0 0 chr3 167060532 167060561 -60464017 + (CA)n Simple_repeat Simple_repeat 2 30 0 9753 137 44 8 chr3 167060561 167060640 -60463938 + L1PBa LINE L1 3900 3975 -2887 255 253 99 0 chr3 167060650 167060741 -60463837 + L1M4 LINE L1 3013 3112 -3034 257 283 174 0 chr3 167062515 167062607 -60461971 - L2 LINE L2 -9 3304 3197 2658 83 103 2 chr3 167062843 167063250 -60461328 - LTR7 LTR ERV1 -2 448 1 2103 114 50 13 chr3 167063250 167063626 -60460952 - HERVH LTR ERV1 0 7713 7324 1315 129 18 5 chr3 167063626 167063843 -60460735 - HERVH LTR ERV1 -1894 5819 5600 4195 137 0 1 chr3 167063844 167064507 -60460071 - HERVH LTR ERV1 -2564 5149 4488 5533 104 5 3 chr3 167064508 167065362 -60459216 - HERVH LTR ERV1 -3719 3994 3140 4034 116 1 11 chr3 167065356 167066009 -60458569 - HERVH LTR ERV1 -4726 2987 2341 * 23 0 0 0 chr3 167066241 167066264 -60458314 + AT_rich Low_complexity Low_complexity 1 23 0 384 326 135 25 chr3 167066393 167066638 -60457940 - L2 LINE L2 -341 2973 2702 831 181 0 0 chr3 167067020 167067147 -60457431 - FLAM_C SINE Alu -16 127 1 2228 103 3 10 chr3 167067210 167067520 -60457058 - AluSg SINE Alu -2 308 1 21 0 0 0 chr3 167067847 167067868 -60456710 + AT_rich Low_complexity Low_complexity 1 21 0 1857 74 115 4 chr3 167067940 167068210 -60456368 - AluY SINE Alu -11 300 1 671 209 13 13 chr3 167068987 167069145 -60455433 + MLT2B1 LTR ERVL 361 518 -2 1196 209 139 14 chr3 167069671 167070101 -60454477 + LTR54B LTR ERV1 15 498 0 1921 167 0 6 chr3 167070914 167071226 -60453352 - AluSg SINE Alu 0 310 1 222 341 24 12 chr3 167071456 167071538 -60453040 - MIR SINE MIR -123 139 57 276 312 0 0 chr3 167071866 167071943 -60452635 + (CATATA)n Simple_repeat Simple_repeat 3 79 0 218 330 90 77 chr3 167072242 167072733 -60451845 - L2 LINE L2 -8 3305 2809 394 264 22 114 chr3 167073294 167073521 -60451057 - MIR SINE MIR 0 262 57 1983 102 3 11 chr3 167075035 167075319 -60449259 + AluSx SINE Alu 18 299 -13 808 263 21 10 chr3 167075519 167075751 -60448827 + MIR SINE MIR 19 252 -10 519 312 63 41 chr3 167076010 167076318 -60448260 - L1ME LINE L1 -608 6054 5723 2166 123 10 0 chr3 167076318 167076618 -60447960 - AluSx SINE Alu -9 303 1 519 312 63 41 chr3 167076618 167076754 -60447824 - L1ME LINE L1 -939 5723 5592 343 298 113 14 chr3 167076812 167077104 -60447474 - L1ME LINE L1 -3283 3361 3041 1759 172 11 56 chr3 167077142 167077519 -60447059 - MLT1A1 LTR MaLR -5 360 1 795 239 50 34 chr3 167077524 167077762 -60446816 - MLT1A2 LTR MaLR 0 374 133 2220 115 7 10 chr3 167078058 167078362 -60446216 - AluSx SINE Alu -9 303 1 800 251 5 0 chr3 167078460 167078647 -60445931 - MER5A DNA MER1_type -1 188 1 237 158 0 53 chr3 167078855 167078912 -60445666 + (TATATG)n Simple_repeat Simple_repeat 3 56 0 3275 233 9 31 chr3 167079176 167080205 -60444373 - L1P LINE L1 -4274 1872 867 2012 281 19 2 chr3 167080205 167080828 -60443750 - L1ME LINE L1 -5448 1094 461 4288 215 24 17 chr3 167080854 167081866 -60442712 + L1PA10 LINE L1 1 1019 -4856 35332 91 11 7 chr3 167081882 167087765 -60436813 + L1PA6 LINE L1 11 5915 -239 1070 64 0 0 chr3 167087753 167087894 -60436684 + L1P LINE L1 4113 4253 -1893 * 802 50 0 8 chr3 167087894 167088013 -60436565 + L1P LINE L1 5232 5349 -797 * 1151 82 21 6 chr3 167088011 167088190 -60436388 + L1PA6 LINE L1 5921 6134 -18 459 0 0 0 chr3 167088194 167088245 -60436333 + (TA)n Simple_repeat Simple_repeat 1 51 0 22901 147 7 12 chr3 167088251 167090444 -60434134 + L1PA10 LINE L1 1023 3225 -3258 2242 111 36 28 chr3 167090444 167090805 -60433773 - THE1B LTR MaLR 0 364 1 22901 147 7 12 chr3 167090805 167094070 -60430508 + L1PA10 LINE L1 3225 6479 -4 597 263 6 70 chr3 167094112 167094283 -60430295 - L1M4 LINE L1 -6112 430 271 454 181 21 11 chr3 167094307 167094401 -60430177 - MLT1D LTR MaLR -18 487 393 564 301 28 28 chr3 167094440 167094653 -60429925 - MLT1D LTR MaLR -292 213 1 1123 272 19 63 chr3 167094666 167095078 -60429500 - MLT1D-int LTR MaLR -15 1356 963 4700 254 27 16 chr3 167095150 167096988 -60427590 - L1P LINE L1 -3561 3236 1368 4366 251 34 17 chr3 167096988 167098385 -60426193 + L1P LINE L1 3235 4655 -2142 207 0 0 0 chr3 167098523 167098546 -60426032 + (T)n Simple_repeat Simple_repeat 1 23 0 2585 225 47 6 chr3 167098786 167099427 -60425151 + L1P LINE L1 3352 4018 -2128 225 0 0 0 chr3 167099550 167099575 -60425003 + (T)n Simple_repeat Simple_repeat 1 25 0 566 269 66 4 chr3 167099757 167099984 -60424594 - L1M4 LINE L1 -6281 261 21 21 57 0 0 chr3 167100138 167100173 -60424405 + AT_rich Low_complexity Low_complexity 1 35 0 212 269 108 69 chr3 167100674 167100804 -60423774 - MIR3 SINE MIR -34 174 40 1342 229 67 9 chr3 167101185 167101526 -60423052 + MLT1A1 LTR MaLR 5 365 0 5020 123 15 25 chr3 167102889 167104278 -60420300 + pTR5 LTR ERV1 743 2438 0 22 0 0 0 chr3 167105037 167105059 -60419519 + AT_rich Low_complexity Low_complexity 1 22 0 209 305 57 50 chr3 167105070 167105211 -60419367 - MIR SINE MIR -71 191 50 2279 107 3 0 chr3 167105909 167106217 -60418361 + AluSp SINE Alu 1 309 -4 28 79 0 0 chr3 167106871 167106934 -60417644 + AT_rich Low_complexity Low_complexity 1 63 0 698 223 16 36 chr3 167107037 167107230 -60417348 + MER5A DNA MER1_type 1 189 0 1284 237 18 60 chr3 167107360 167107740 -60416838 - MLT1A1 LTR MaLR -1 364 1 202 267 25 92 chr3 167107805 167107925 -60416653 - MIR SINE MIR 0 262 151 383 299 14 54 chr3 167107961 167108108 -60416470 - MIR SINE MIR -107 155 15 25 65 0 0 chr3 167108124 167108170 -60416408 + AT_rich Low_complexity Low_complexity 1 46 0 2276 192 26 2 chr3 167108341 167108757 -60415821 + MSTB LTR MaLR 1 426 0 2173 60 0 11 chr3 167109813 167110096 -60414482 - AluY SINE Alu -31 280 1 3847 139 9 3 chr3 167110247 167110878 -60413700 - MER41B LTR ERV1 0 635 1 22 35 0 0 chr3 167111127 167111156 -60413422 + AT_rich Low_complexity Low_complexity 1 29 0 240 348 89 5 chr3 167111480 167111704 -60412874 + L1ME LINE L1 4793 5035 -1111 378 314 61 48 chr3 167111855 167112295 -60412283 + L1ME LINE L1 5268 5713 -408 304 91 0 6 chr3 167112317 167112375 -60412203 - MLT2D LTR ERVL -2 412 374 342 0 0 0 chr3 167112378 167112416 -60412162 + (TG)n Simple_repeat Simple_repeat 2 39 0 709 192 104 136 chr3 167112416 167112724 -60411854 + LTR54 LTR ERV1 5 302 -208 556 209 26 0 chr3 167113004 167113119 -60411459 + LTR24C LTR ERV1 518 635 0 241 299 0 15 chr3 167113215 167113282 -60411296 + MLT1A2-int LTR MaLR 676 741 -994 2216 213 16 53 chr3 167113366 167113859 -60410719 + MLT1A2-int LTR MaLR 1261 1735 0 1471 207 60 41 chr3 167113859 167114226 -60410352 + MLT1A2 LTR MaLR 1 374 0 655 235 36 65 chr3 167114233 167114480 -60410098 + MLT1A2-int LTR MaLR 147 386 -985 697 224 14 51 chr3 167114491 167114764 -60409814 - L1MC4 LINE L1 -556 7332 6992 24 67 0 0 chr3 167115485 167115530 -60409048 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr3 167115535 167115556 -60409022 + AT_rich Low_complexity Low_complexity 1 21 0 351 200 0 0 chr3 167115974 167116034 -60408544 - AluJ/FLAM SINE Alu -242 60 1 227 375 178 36 chr3 167116151 167116460 -60408118 + L2 LINE L2 2918 3270 -2 1350 232 11 38 chr3 167116701 167117068 -60407510 + MLT1A1 LTR MaLR 2 358 -7 2208 122 0 0 chr3 167117621 167117917 -60406661 - AluSq SINE Alu -17 296 1 226 283 0 94 chr3 167118306 167118412 -60406166 - MIR SINE MIR -59 203 108 191 204 20 0 chr3 167118892 167118941 -60405637 + CT-rich Low_complexity Low_complexity 3 52 0 2072 196 138 80 chr3 167120275 167121126 -60403452 + LTR28 LTR ERV1 1 1020 0 25 0 0 0 chr3 167121732 167121757 -60402821 + AT_rich Low_complexity Low_complexity 1 25 0 551 232 166 7 chr3 167122406 167122557 -60402021 - MER5B DNA MER1_type -3 175 1 230 132 0 0 chr3 167122568 167122606 -60401972 - L1MC5 LINE L1 -600 7361 7324 24 77 0 0 chr3 167123401 167123453 -60401125 + AT_rich Low_complexity Low_complexity 1 52 0 331 237 101 43 chr3 167124092 167124231 -60400347 + MLT1I LTR MaLR 3 149 -260 565 266 35 14 chr3 167125119 167125262 -60399316 - MIR SINE MIR -105 157 12 499 233 9 0 chr3 167126142 167126258 -60398320 - MER105 DNA DNA -45 159 43 532 241 37 102 chr3 167126678 167126923 -60397655 - MER102b DNA MER1_type -19 322 94 6693 113 10 9 chr3 167128287 167129254 -60395324 + LTR5 LTR ERVK 2 969 0 30 0 0 0 chr3 167131824 167131854 -60392724 + AT_rich Low_complexity Low_complexity 1 30 0 2259 97 0 3 chr3 167131934 167132234 -60392344 + AluY SINE Alu 11 309 -2 5039 126 25 59 chr3 167132243 167132882 -60391696 + L1MA5 LINE L1 5352 5948 -352 2101 105 11 0 chr3 167132882 167133168 -60391410 + AluSg SINE Alu 1 289 -21 5039 126 25 59 chr3 167133168 167133498 -60391080 + L1MA5 LINE L1 5948 6288 -12 482 247 97 13 chr3 167134256 167134410 -60390168 + MIR SINE MIR 93 259 -3 879 199 25 35 chr3 167135308 167135509 -60389069 + MER20 DNA MER1_type 12 210 -9 2393 85 0 3 chr3 167135525 167135831 -60388747 - AluY SINE Alu -2 309 5 22 35 0 0 chr3 167135940 167135969 -60388609 + AT_rich Low_complexity Low_complexity 1 29 0 216 339 69 23 chr3 167136367 167136497 -60388081 - L2 LINE L2 0 3272 3137 316 356 40 34 chr3 167136722 167136899 -60387679 - L2 LINE L2 -439 2875 2698 192 254 200 0 chr3 167136929 167136984 -60387594 - L2 LINE L2 -68 3204 3139 269 268 45 95 chr3 167137131 167137310 -60387268 - L2 LINE L2 -213 3059 2890 324 305 79 45 chr3 167137691 167137868 -60386710 - MIR SINE MIR -23 239 57 477 285 7 35 chr3 167137930 167138074 -60386504 + MIR SINE MIR 106 245 -17 590 260 18 24 chr3 167138342 167138511 -60386067 - MER5B DNA MER1_type 0 178 11 22 35 0 0 chr3 167139340 167139369 -60385209 + AT_rich Low_complexity Low_complexity 1 29 0 312 111 0 0 chr3 167139399 167139453 -60385125 + (TC)n Simple_repeat Simple_repeat 1 54 0 25 0 0 0 chr3 167139992 167140017 -60384561 + AT_rich Low_complexity Low_complexity 1 25 0 256 196 0 0 chr3 167140070 167140121 -60384457 + MER116 DNA Mariner 3 53 -27 199 276 52 0 chr3 167140273 167140331 -60384247 - L2 LINE L2 -15 3257 3197 1686 91 0 9 chr3 167140692 167140948 -60383630 + AluSg/x SINE Alu 77 312 0 303 306 9 0 chr3 167141535 167141646 -60382932 + (TA)n Simple_repeat Simple_repeat 1 112 0 1588 210 14 0 chr3 167143614 167143900 -60380678 + AluJb SINE Alu 1 290 -22 29 0 0 0 chr3 167144726 167144755 -60379823 + AT_rich Low_complexity Low_complexity 1 29 0 3662 105 17 13 chr3 167144964 167145487 -60379091 - MER1A DNA MER1_type 0 527 3 1557 178 56 0 chr3 167147728 167147998 -60376580 + MSTD LTR MaLR 1 285 -111 1031 132 191 10 chr3 167148004 167148208 -60376370 + MER7A DNA MER2_type 1 239 -107 210 299 52 0 chr3 167148211 167148308 -60376270 + L2 LINE L2 2875 2976 -338 653 209 8 8 chr3 167148402 167148531 -60376047 + MER7A DNA MER2_type 207 335 -1 632 136 10 0 chr3 167148534 167148637 -60375941 + MSTC LTR MaLR 325 428 0 206 286 143 53 chr3 167148913 167149255 -60375323 - L2 LINE L2 -123 3190 2818 357 306 162 44 chr3 167149711 167149940 -60374638 - MIR SINE MIR 0 262 7 550 264 24 24 chr3 167151233 167151445 -60373133 - L1MA9 LINE L1 -117 6195 5984 17604 95 8 41 chr3 167151464 167154046 -60370532 - Charlie3 DNA MER1_type -4 2706 211 3591 167 3 42 chr3 167154100 167154930 -60369648 - L1MA9 LINE L1 -349 5942 5146 2388 205 31 3 chr3 167154929 167155487 -60369091 + L1MA9 LINE L1 4534 5155 -991 * 618 330 15 5 chr3 167155843 167156046 -60368532 + MIR SINE MIR 37 241 -21 243 303 25 43 chr3 167156336 167156498 -60368080 - HAL1 LINE L1 -2207 300 142 629 305 0 0 chr3 167156709 167156896 -60367682 - MER5A DNA MER1_type -1 188 2 309 276 112 0 chr3 167156896 167157012 -60367566 + MLT1L LTR MaLR 52 180 -435 186 43 0 0 chr3 167157091 167157114 -60367464 + (TG)n Simple_repeat Simple_repeat 2 24 0 222 271 17 0 chr3 167157114 167157173 -60367405 + (TA)n Simple_repeat Simple_repeat 2 61 0 1879 121 4 0 chr3 167157783 167158047 -60366531 - AluSc SINE Alu -6 303 39 21 36 0 0 chr3 167158116 167158144 -60366434 + AT_rich Low_complexity Low_complexity 1 28 0 1050 270 30 20 chr3 167158178 167158478 -60366100 - MLT1J1 LTR MaLR -116 330 28 458 315 138 29 chr3 167159117 167159393 -60365185 + MLT1J2 LTR MaLR 82 387 -63 205 370 114 34 chr3 167159463 167159834 -60364744 - L2 LINE L2 -505 2809 2392 402 21 0 0 chr3 167159834 167159881 -60364697 + (CA)n Simple_repeat Simple_repeat 2 48 0 205 370 114 34 chr3 167159881 167159974 -60364604 - L2 LINE L2 -922 2392 2308 2186 206 21 14 chr3 167161392 167161828 -60362750 - MLT2B1 LTR ERVL 0 520 82 3254 234 59 20 chr3 167161845 167162644 -60361934 - MER21B LTR ERV1 -11 852 23 370 245 0 98 chr3 167162667 167162769 -60361809 - MER21B LTR ERV1 -771 92 1 28 29 0 0 chr3 167162985 167163020 -60361558 + AT_rich Low_complexity Low_complexity 1 35 0 2076 117 117 6 chr3 167163035 167163376 -60361202 + MER9 LTR ERVK 133 511 0 1908 174 122 10 chr3 167163773 167164159 -60360419 + MSTB1 LTR MaLR 1 429 -3 2384 125 23 81 chr3 167164888 167165360 -60359218 + MER65A LTR ERV1 1 445 0 580 212 8 8 chr3 167165490 167165595 -60358983 - MLT1E2 LTR MaLR -13 613 509 1946 176 32 49 chr3 167165595 167166169 -60358409 - MLT2A2 LTR ERVL -2 552 1 819 231 102 43 chr3 167166172 167166572 -60358006 - MLT1E2 LTR MaLR -113 513 59 252 24 98 0 chr3 167167153 167167194 -60357384 + L1MA2 LINE L1 6246 6290 -14 180 0 0 0 chr3 167167194 167167214 -60357364 + (CA)n Simple_repeat Simple_repeat 1 20 0 1819 146 29 55 chr3 167167333 167167718 -60356860 - THE1C LTR MaLR 0 375 1 8898 140 30 30 chr3 167167730 167169182 -60355396 - THE1C-int LTR MaLR 0 1580 129 1280 189 11 13 chr3 167170322 167170604 -60353974 - MLT1A1 LTR MaLR -13 352 4 1248 149 5 0 chr3 167170662 167170850 -60353728 + AluSx SINE Alu 1 189 -123 620 113 55 25 chr3 167172718 167173503 -60351075 + (TA)n Simple_repeat Simple_repeat 1 808 0 417 222 19 9 chr3 167173525 167173633 -60350945 - L1MC/D LINE L1 -2004 5804 5696 283 326 62 28 chr3 167173644 167173742 -60350836 - L2 LINE L2 -457 2857 2751 2242 51 9 35 chr3 167173742 167174057 -60350521 - L1PA4 LINE L1 -2 6153 5847 283 326 62 28 chr3 167174057 167174102 -60350476 - L2 LINE L2 -563 2751 2709 671 314 52 60 chr3 167174651 167175285 -60349293 + HERV16 LTR ERVL 3325 3953 -1043 987 262 72 66 chr3 167175298 167175640 -60348938 + LTR40a LTR ERVL 1 348 -171 1559 141 22 38 chr3 167175640 167175959 -60348619 + L1MA7 LINE L1 5976 6289 -2 987 262 72 66 chr3 167175959 167176132 -60348446 + LTR40a LTR ERVL 348 519 0 874 357 61 59 chr3 167176132 167177219 -60347359 + HERV16 LTR ERVL 4253 5341 -313 667 281 85 21 chr3 167177302 167177681 -60346897 + LTR16B LTR ERVL 1 464 0 441 277 0 0 chr3 167177739 167177840 -60346738 + Cheshire DNA MER1_type 1313 1413 -1007 1927 201 115 12 chr3 167177845 167178358 -60346220 + Cheshire DNA MER1_type 1832 2397 -23 22 0 0 0 chr3 167180034 167180056 -60344522 + AT_rich Low_complexity Low_complexity 1 22 0 270 0 0 0 chr3 167180280 167180310 -60344268 + (CA)n Simple_repeat Simple_repeat 1 30 0 819 167 4 25 chr3 167180585 167180859 -60343719 + MLT1A1 LTR MaLR 1 365 0 267 31 0 0 chr3 167181216 167181248 -60343330 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 33 0 0 chr3 167181290 167181320 -60343258 + AT_rich Low_complexity Low_complexity 1 30 0 351 317 106 69 chr3 167181320 167181840 -60342738 - L2 LINE L2 -1029 2285 1747 22 0 0 0 chr3 167182458 167182480 -60342098 + AT_rich Low_complexity Low_complexity 1 22 0 638 87 325 0 chr3 167182733 167182859 -60341719 - L1MA3 LINE L1 0 6305 6139 310 123 77 0 chr3 167182870 167182935 -60341643 + L1MA1 LINE L1 6037 6106 -196 240 59 0 0 chr3 167183875 167183909 -60340669 + (TG)n Simple_repeat Simple_repeat 1 34 0 23 33 0 0 chr3 167184039 167184069 -60340509 + AT_rich Low_complexity Low_complexity 1 30 0 655 270 29 11 chr3 167184584 167184758 -60339820 + LTR33 LTR ERVL 38 214 -307 2275 60 0 11 chr3 167185120 167185452 -60339126 + AluY SINE Alu 1 329 0 225 0 0 0 chr3 167186111 167186136 -60338442 + (TG)n Simple_repeat Simple_repeat 2 26 0 249 33 0 0 chr3 167187488 167187518 -60337060 + (GAA)n Simple_repeat Simple_repeat 2 31 0 193 164 18 18 chr3 167188233 167188288 -60336290 + GA-rich Low_complexity Low_complexity 2 56 0 719 279 67 7 chr3 167188799 167189082 -60335496 + HAL1b LINE L1 311 610 -738 3873 281 145 40 chr3 167189722 167190656 -60333922 - L2 LINE L2 -624 2690 1855 1736 104 22 4 chr3 167190656 167190924 -60333654 + L1MA1 LINE L1 6015 6287 -15 3873 281 145 40 chr3 167190924 167191825 -60332753 - L2 LINE L2 -1459 1855 663 5086 130 55 17 chr3 167191829 167192697 -60331881 - Tigger1 DNA MER2_type 0 2418 1518 4642 158 79 35 chr3 167192698 167193663 -60330915 - Tigger1 DNA MER2_type -1358 1060 54 243 271 0 0 chr3 167193729 167193788 -60330790 - L2 LINE L2 -2653 661 603 893 324 72 15 chr3 167194301 167194776 -60329802 - L1ME3A LINE L1 -233 5937 5436 24 53 0 0 chr3 167194843 167194881 -60329697 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr3 167194960 167194982 -60329596 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr3 167195030 167195059 -60329519 + AT_rich Low_complexity Low_complexity 1 29 0 362 157 11 79 chr3 167195177 167195266 -60329312 + Charlie5 DNA MER1_type 7 89 -2523 * 594 191 26 0 chr3 167195239 167195391 -60329187 + Charlie5 DNA MER1_type 2430 2585 -27 191 362 94 79 chr3 167195677 167195995 -60328583 + L2 LINE L2 2942 3264 -8 1503 198 33 0 chr3 167196332 167196605 -60327973 + AluJb SINE Alu 5 286 -26 189 0 0 0 chr3 167196605 167196626 -60327952 + (TA)n Simple_repeat Simple_repeat 1 21 0 309 246 0 0 chr3 167196627 167196696 -60327882 - L1MC4 LINE L1 -1338 6704 6636 215 273 0 0 chr3 167197557 167197601 -60326977 + polypyrimidine Low_complexity Low_complexity 1 44 0 22 0 0 0 chr3 167198424 167198446 -60326132 + AT_rich Low_complexity Low_complexity 1 22 0 253 259 0 0 chr3 167198532 167198586 -60325992 + L2 LINE L2 3219 3272 0 23 36 0 54 chr3 167198780 167198836 -60325742 + AT_rich Low_complexity Low_complexity 1 53 0 538 281 139 26 chr3 167199213 167199579 -60324999 + L1MC4a LINE L1 5481 5801 -361 291 140 0 0 chr3 167199659 167199709 -60324869 + (TATG)n Simple_repeat Simple_repeat 3 52 0 3523 46 0 0 chr3 167201148 167201663 -60322915 - L1PA4 LINE L1 -475 5679 5165 3858 32 6 0 chr3 167201663 167202131 -60322447 + L1PA4 LINE L1 5677 6150 -5 22 56 0 0 chr3 167202726 167202762 -60321816 + AT_rich Low_complexity Low_complexity 1 36 0 32 0 0 0 chr3 167203748 167203780 -60320798 + AT_rich Low_complexity Low_complexity 1 32 0 1066 118 0 12 chr3 167203780 167203949 -60320629 - L1MA1 LINE L1 -4 6298 6132 525 231 86 72 chr3 167205939 167206160 -60318418 - L1ME3 LINE L1 -1 6161 5938 185 160 0 20 chr3 167206628 167206678 -60317900 + (TGAA)n Simple_repeat Simple_repeat 3 51 0 244 365 0 0 chr3 167206678 167206752 -60317826 - L3 LINE CR1 -105 1472 1399 186 291 0 18 chr3 167207012 167207067 -60317511 - L3 LINE CR1 -284 1293 1240 214 222 26 7 chr3 167207553 167207706 -60316872 + (TA)n Simple_repeat Simple_repeat 1 156 0 333 196 19 9 chr3 167207740 167207847 -60316731 + (TA)n Simple_repeat Simple_repeat 2 109 0 29 70 0 0 chr3 167208401 167208458 -60316120 + AT_rich Low_complexity Low_complexity 1 57 0 1560 182 54 3 chr3 167208604 167208900 -60315678 + AluJb SINE Alu 2 312 0 31 0 0 0 chr3 167210382 167210413 -60314165 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr3 167210726 167210749 -60313829 + AT_rich Low_complexity Low_complexity 1 23 0 509 269 82 22 chr3 167211174 167211356 -60313222 + MIR SINE MIR 70 262 0 1988 148 0 7 chr3 167212075 167212380 -60312198 + AluSx SINE Alu 1 303 -9 1319 190 71 24 chr3 167212935 167213230 -60311348 - AluJb SINE Alu -3 309 1 21 0 0 0 chr3 167213294 167213315 -60311263 + AT_rich Low_complexity Low_complexity 1 21 0 23 68 0 0 chr3 167213533 167213577 -60311001 + AT_rich Low_complexity Low_complexity 1 44 0 21 36 0 0 chr3 167214387 167214415 -60310163 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr3 167215138 167215171 -60309407 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr3 167217042 167217072 -60307506 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr3 167217121 167217150 -60307428 + AT_rich Low_complexity Low_complexity 1 29 0 222 62 0 0 chr3 167217547 167217579 -60306999 + (A)n Simple_repeat Simple_repeat 1 32 0 30 27 0 0 chr3 167218237 167218274 -60306304 + AT_rich Low_complexity Low_complexity 1 37 0 1224 197 72 102 chr3 167219711 167219984 -60304594 - L1MC4 LINE L1 -158 7884 7604 183 80 0 0 chr3 167219984 167220009 -60304569 + (TG)n Simple_repeat Simple_repeat 1 25 0 1224 197 72 102 chr3 167220009 167220067 -60304511 - L1MC4 LINE L1 -438 7604 7546 2236 113 0 6 chr3 167220067 167220378 -60304200 - AluSg SINE Alu -1 309 1 1224 197 72 102 chr3 167220378 167220477 -60304101 - L1MC4 LINE L1 -496 7546 7466 336 176 0 0 chr3 167220657 167220725 -60303853 + (TA)n Simple_repeat Simple_repeat 2 69 0 302 296 197 7 chr3 167221330 167221482 -60303096 + MER5A DNA MER1_type 9 189 0 28 29 0 0 chr3 167222680 167222715 -60301863 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr3 167225242 167225263 -60299315 + AT_rich Low_complexity Low_complexity 1 21 0 3397 139 29 18 chr3 167225457 167226432 -60298146 - MER61E LTR ERV1 -62 507 3 353 301 30 8 chr3 167226458 167226591 -60297987 - L2 LINE L2 -896 2418 2283 1004 100 74 16 chr3 167226753 167226943 -60297635 - L1MA8 LINE L1 -10 6281 6081 299 340 40 0 chr3 167226963 167227063 -60297515 - L2 LINE L2 0 3272 3169 475 316 14 0 chr3 167227071 167227210 -60297368 - L2 LINE L2 -9 3304 3164 462 309 48 61 chr3 167227715 167227808 -60296770 - L2 LINE L2 -282 3031 2938 2090 108 10 3 chr3 167227808 167228113 -60296465 + AluSx SINE Alu 4 310 -2 462 309 48 61 chr3 167228113 167228249 -60296329 - L2 LINE L2 -375 2938 2805 28 91 0 0 chr3 167229526 167229603 -60294975 + AT_rich Low_complexity Low_complexity 1 77 0 24 32 0 0 chr3 167229719 167229750 -60294828 + AT_rich Low_complexity Low_complexity 1 31 0 204 289 0 13 chr3 167229930 167230006 -60294572 - MIR SINE MIR -109 153 79 22 0 0 0 chr3 167230475 167230497 -60294081 + AT_rich Low_complexity Low_complexity 1 22 0 368 374 0 28 chr3 167231448 167231627 -60292951 + MER5B DNA MER1_type 4 177 -1 264 59 0 0 chr3 167232311 167232345 -60292233 + (GA)n Simple_repeat Simple_repeat 1 34 0 409 317 48 61 chr3 167233297 167233691 -60290887 + MLT1J LTR MaLR 104 492 -19 411 321 180 36 chr3 167233888 167234361 -60290217 + L1MC/D LINE L1 5258 5798 -2010 180 77 0 0 chr3 167234492 167234518 -60290060 + (AAATG)n Simple_repeat Simple_repeat 2 27 0 21 0 0 0 chr3 167234853 167234874 -60289704 + AT_rich Low_complexity Low_complexity 1 21 0 408 319 171 20 chr3 167235326 167235775 -60288803 - L2 LINE L2 -922 2392 1876 188 258 41 103 chr3 167236461 167236533 -60288045 + L2 LINE L2 2622 2688 -626 1753 138 24 17 chr3 167236533 167236678 -60287900 - AluSc SINE Alu -10 299 156 212 0 36 0 chr3 167236678 167236706 -60287872 + (TTG)n Simple_repeat Simple_repeat 2 30 0 1753 138 24 17 chr3 167236706 167236857 -60287721 - AluSc SINE Alu -153 156 1 188 258 41 103 chr3 167236857 167236881 -60287697 + L2 LINE L2 2688 2712 -602 728 86 0 0 chr3 167237007 167237100 -60287478 - U6 snRNA snRNA -14 93 1 23 54 0 0 chr3 167238459 167238496 -60286082 + AT_rich Low_complexity Low_complexity 1 37 0 1217 205 33 56 chr3 167239362 167239665 -60284913 - AluJo SINE Alu -13 299 4 183 80 0 0 chr3 167240093 167240118 -60284460 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 2107 152 22 19 chr3 167240240 167240601 -60283977 + THE1B LTR MaLR 1 362 -2 9942 119 22 36 chr3 167240602 167242204 -60282374 + THE1B-int LTR MaLR 1 1580 0 2240 149 22 0 chr3 167242204 167242560 -60282018 + THE1B LTR MaLR 1 364 0 692 315 97 55 chr3 167242882 167243234 -60281344 + HAL1 LINE L1 652 1034 -1473 2253 101 0 3 chr3 167243234 167243531 -60281047 - AluSc SINE Alu -13 296 1 692 315 97 55 chr3 167243531 167243692 -60280886 + HAL1 LINE L1 1034 1187 -1320 213 283 0 0 chr3 167243695 167243741 -60280837 + polypurine Low_complexity Low_complexity 1 46 0 2194 84 20 3 chr3 167243830 167244126 -60280452 - AluY SINE Alu -4 307 7 898 216 92 61 chr3 167244196 167244524 -60280054 - MER2 DNA MER2_type -7 338 1 1459 221 7 3 chr3 167244577 167244880 -60279698 + AluJb SINE Alu 3 306 -6 1495 173 38 91 chr3 167244906 167245300 -60279278 + THE1C LTR MaLR 3 375 0 943 58 29 22 chr3 167245300 167245438 -60279140 + THE1C-int LTR MaLR 1 139 -1441 432 254 60 54 chr3 167246248 167246433 -60278145 + Charlie8 DNA MER1_type 79 264 -2153 364 264 13 44 chr3 167246637 167246796 -60277782 + (TATATG)n Simple_repeat Simple_repeat 3 156 0 2606 253 61 34 chr3 167247360 167248126 -60276452 - MER21B LTR ERV1 -58 805 19 293 343 0 0 chr3 167248146 167248219 -60276359 - MER21B LTR ERV1 -773 90 18 2409 75 13 0 chr3 167248219 167248527 -60276051 + AluSq SINE Alu 1 312 -1 29 94 0 0 chr3 167248596 167248681 -60275897 + AT_rich Low_complexity Low_complexity 1 85 0 29 70 0 0 chr3 167248867 167248924 -60275654 + AT_rich Low_complexity Low_complexity 1 57 0 337 179 0 0 chr3 167250834 167250890 -60273688 + L1MC5 LINE L1 7318 7373 -588 413 316 103 7 chr3 167250890 167251045 -60273533 + MER5B DNA MER1_type 1 170 -8 699 226 71 0 chr3 167251062 167251217 -60273361 + MER5B DNA MER1_type 2 167 -11 21311 170 21 12 chr3 167251353 167256251 -60268327 + L1M1 LINE L1 15 4956 -2609 250 222 0 28 chr3 167256368 167256440 -60268138 + L1MC4a LINE L1 7181 7250 -558 1208 208 53 35 chr3 167256444 167256819 -60267759 - MLT1D-int LTR MaLR -982 389 8 3950 166 199 8 chr3 167256907 167257756 -60266822 - Tigger7 DNA MER2_type -1464 1023 13 519 248 0 0 chr3 167257778 167257895 -60266683 - MLT1D LTR MaLR 0 505 389 1540 191 27 73 chr3 167257895 167258193 -60266385 + MLT1B LTR MaLR 1 276 -114 909 66 8 0 chr3 167258193 167258314 -60266264 - L1PA7 LINE L1 0 6154 6033 1540 191 27 73 chr3 167258314 167258424 -60266154 + MLT1B LTR MaLR 276 390 0 1048 229 83 30 chr3 167258424 167258688 -60265890 - MLT1D LTR MaLR -112 393 116 417 20 0 0 chr3 167259053 167259103 -60265475 + (GA)n Simple_repeat Simple_repeat 2 51 0 228 204 0 0 chr3 167260349 167260393 -60264185 - Charlie8 DNA MER1_type -1012 1405 1362 318 256 85 54 chr3 167261309 167261438 -60263140 + MIR3 SINE MIR 43 175 -33 202 205 0 0 chr3 167261870 167261909 -60262669 + (CATATA)n Simple_repeat Simple_repeat 6 44 0 1130 219 13 4 chr3 167262100 167262328 -60262250 + L1M4 LINE L1 23 252 -6290 15380 52 1 0 chr3 167262509 167265215 -60259363 + L1PA5 LINE L1 3440 6148 -6 362 322 151 8 chr3 167265452 167265822 -60258756 - L1MC4a LINE L1 -1959 5849 5427 6578 125 9 2 chr3 167267179 167268132 -60256446 + HERVS71 LTR ERV1 6827 7786 -1192 2102 132 3 3 chr3 167268138 167268448 -60256130 + HERVS71 LTR ERV1 8600 8909 -69 4590 41 4 2 chr3 167268448 167269005 -60255573 + LTR6B LTR ERV1 1 558 0 1830 227 79 40 chr3 167269008 167269462 -60255116 + MSTD-int LTR MaLR 1264 1735 0 1075 228 16 31 chr3 167269462 167269717 -60254861 + MSTD LTR MaLR 1 251 -145 298 54 0 0 chr3 167269722 167269759 -60254819 - LTR10A LTR ERV1 -8 601 565 894 205 127 46 chr3 167269932 167270038 -60254540 + MLT1D LTR MaLR 226 322 -183 203 30 0 61 chr3 167270038 167270071 -60254507 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 894 205 127 46 chr3 167270071 167270223 -60254355 + MLT1D LTR MaLR 322 505 0 1854 208 199 128 chr3 167270223 167271472 -60253106 + MLT1D-int LTR MaLR 1 1337 -34 566 270 11 58 chr3 167271508 167271697 -60252881 + MLT1D LTR MaLR 5 184 -321 298 233 216 9 chr3 167271716 167271832 -60252746 + MLT1D LTR MaLR 310 449 -56 1110 157 13 13 chr3 167271833 167272068 -60252510 - L1MA4A LINE L1 -3 6300 6066 422 158 13 0 chr3 167272068 167272144 -60252434 + L1M4 LINE L1 5549 5625 -559 608 237 34 6 chr3 167273071 167273248 -60251330 + L1 LINE L1 3657 3838 -2308 4356 178 21 6 chr3 167273250 167274142 -60250436 - L1 LINE L1 -880 5266 4361 211 231 19 0 chr3 167274437 167274489 -60250089 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 279 0 0 0 chr3 167274636 167274667 -60249911 + (TG)n Simple_repeat Simple_repeat 2 32 0 439 242 0 10 chr3 167277404 167277503 -60247075 - MER63 DNA MER1_type -81 755 32 420 299 58 5 chr3 167277510 167277560 -60247018 - MER20B DNA MER1_type -5 214 168 2108 83 36 27 chr3 167277560 167277861 -60246717 + AluSc SINE Alu 1 304 -5 420 299 58 5 chr3 167277861 167277995 -60246583 - MER20B DNA MER1_type -51 168 16 637 172 30 124 chr3 167278314 167278547 -60246031 + MER33 DNA MER1_type 5 215 -109 2274 60 0 11 chr3 167278547 167278873 -60245705 - AluY SINE Alu 0 323 1 628 276 29 11 chr3 167279216 167279390 -60245188 - LTR33 LTR ERVL -307 214 38 23 33 0 0 chr3 167279906 167279936 -60244642 + AT_rich Low_complexity Low_complexity 1 30 0 243 79 0 0 chr3 167280066 167280104 -60244474 + (CA)n Simple_repeat Simple_repeat 1 38 0 310 123 77 0 chr3 167281044 167281109 -60243469 - L1MA1 LINE L1 -196 6106 6037 638 87 325 0 chr3 167281120 167281246 -60243332 + L1MA3 LINE L1 6139 6305 0 23 0 0 0 chr3 167281499 167281522 -60243056 + AT_rich Low_complexity Low_complexity 1 23 0 375 317 104 69 chr3 167282141 167282662 -60241916 + L2 LINE L2 1747 2285 -1029 23 33 0 0 chr3 167282662 167282692 -60241886 + AT_rich Low_complexity Low_complexity 1 30 0 267 31 0 0 chr3 167282734 167282766 -60241812 + (CA)n Simple_repeat Simple_repeat 2 33 0 819 170 4 25 chr3 167283123 167283397 -60241181 - MLT1A1 LTR MaLR 0 365 1 270 0 0 0 chr3 167283671 167283701 -60240877 + (TG)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr3 167283925 167283947 -60240631 + AT_rich Low_complexity Low_complexity 1 22 0 1967 203 115 12 chr3 167285623 167286136 -60238442 - Cheshire DNA MER1_type -23 2397 1832 459 267 0 0 chr3 167286141 167286242 -60238336 - Cheshire DNA MER1_type -1007 1413 1313 662 281 85 21 chr3 167286300 167286679 -60237899 - LTR16B LTR ERVL 0 464 1 899 356 62 60 chr3 167286762 167287849 -60236729 - HERVL LTR ERVL -313 5341 4253 979 275 66 60 chr3 167287849 167288022 -60236556 - LTR40a LTR ERVL 0 519 348 1551 144 22 38 chr3 167288022 167288341 -60236237 - L1MA7 LINE L1 -2 6289 5976 979 275 66 60 chr3 167288341 167288683 -60235895 - LTR40a LTR ERVL -171 348 1 687 306 55 63 chr3 167288696 167289330 -60235248 - HERVL LTR ERVL -1043 3953 3325 284 326 62 28 chr3 167289879 167289924 -60234654 + L2 LINE L2 2709 2751 -563 2227 51 9 35 chr3 167289924 167290239 -60234339 + L1PA4 LINE L1 5847 6153 -2 284 326 62 28 chr3 167290239 167290337 -60234241 + L2 LINE L2 2751 2857 -457 426 222 19 9 chr3 167290348 167290456 -60234122 + L1MC/D LINE L1 5696 5804 -2004 620 116 50 30 chr3 167290478 167291267 -60233311 + (TA)n Simple_repeat Simple_repeat 1 804 0 318 320 140 13 chr3 167293804 167294032 -60230546 + MLT1L LTR MaLR 355 611 -4 21 71 0 0 chr3 167294090 167294132 -60230446 + AT_rich Low_complexity Low_complexity 1 42 0 211 231 19 0 chr3 167295041 167295093 -60229485 + (CATATA)n Simple_repeat Simple_repeat 2 54 0 297 0 0 0 chr3 167295239 167295272 -60229306 + (TG)n Simple_repeat Simple_repeat 2 34 0 443 242 0 10 chr3 167298009 167298108 -60226470 - MER63 DNA MER1_type -307 755 32 416 300 58 5 chr3 167298115 167298165 -60226413 - MER20B DNA MER1_type -5 214 168 2068 83 37 27 chr3 167298165 167298465 -60226113 + AluSc SINE Alu 1 303 -6 416 300 58 5 chr3 167298465 167298599 -60225979 - MER20B DNA MER1_type -51 168 16 1106 159 23 114 chr3 167298918 167299148 -60225430 + MER33 DNA MER1_type 5 254 -2331 441 0 0 0 chr3 167299148 167299197 -60225381 + (TA)n Simple_repeat Simple_repeat 2 50 0 2415 70 0 0 chr3 167299198 167299500 -60225078 - AluY SINE Alu -9 302 1 1106 159 23 114 chr3 167299500 167299619 -60224959 + MER33 DNA MER1_type 253 324 0 270 317 19 29 chr3 167299619 167299723 -60224855 + MLT1K LTR MaLR 71 173 -415 455 282 117 29 chr3 167299821 167300027 -60224551 + MIR SINE MIR 26 249 -13 1993 160 0 0 chr3 167300603 167300915 -60223663 + AluSx SINE Alu 1 312 0 24 0 0 0 chr3 167301563 167301587 -60222991 + AT_rich Low_complexity Low_complexity 1 24 0 1873 165 13 0 chr3 167303501 167303810 -60220768 - MER7A DNA MER2_type 0 346 36 1910 161 0 16 chr3 167304435 167304783 -60219795 + AluSx SINE Alu 1 343 0 27 29 0 0 chr3 167305254 167305288 -60219290 + AT_rich Low_complexity Low_complexity 1 34 0 185 239 149 30 chr3 167305785 167305852 -60218726 + MER5C DNA MER1_type 18 92 -232 1654 136 4 22 chr3 167307326 167307599 -60216979 + AluSx SINE Alu 35 302 -10 22 80 0 0 chr3 167307872 167307922 -60216656 + AT_rich Low_complexity Low_complexity 1 50 0 237 323 63 24 chr3 167308032 167308159 -60216419 - MIR SINE MIR -15 247 116 409 323 87 41 chr3 167308295 167308664 -60215914 + MLT1J2 LTR MaLR 51 436 -14 203 273 73 0 chr3 167309148 167309203 -60215375 + MIR SINE MIR 77 135 -73 678 275 98 25 chr3 167309215 167309446 -60215132 - MIR SINE MIR 0 262 11 1045 187 0 0 chr3 167309446 167309633 -60214945 - MER5A DNA MER1_type -1 188 2 678 275 98 25 chr3 167309633 167309645 -60214933 - MIR SINE MIR -251 11 1 217 255 0 47 chr3 167310193 167310299 -60214279 + A-rich Low_complexity Low_complexity 3 103 0 203 238 38 0 chr3 167310291 167310371 -60214207 + (TA)n Simple_repeat Simple_repeat 1 83 0 * 218 216 0 20 chr3 167310733 167310784 -60213794 + A-rich Low_complexity Low_complexity 4 53 0 257 354 127 22 chr3 167311529 167311710 -60212868 - MIR SINE MIR -32 230 31 599 148 37 94 chr3 167311920 167312131 -60212447 + L1MB3 LINE L1 5993 6181 -2 201 212 61 0 chr3 167312350 167312416 -60212162 + (TTAA)n Simple_repeat Simple_repeat 4 73 0 964 361 35 18 chr3 167312853 167313568 -60211010 + L1PBb LINE L1 21 887 -6322 232 386 18 31 chr3 167313584 167313812 -60210766 + L1PBb LINE L1 1058 1282 -5927 5800 242 47 64 chr3 167314183 167316694 -60207884 + L1PB4 LINE L1 1166 3888 -3320 2125 111 3 0 chr3 167316694 167316983 -60207595 - AluSx SINE Alu -20 292 3 5800 242 47 64 chr3 167316983 167318227 -60206351 + L1PB4 LINE L1 3888 5151 -2057 3633 183 31 4 chr3 167318220 167319015 -60205563 + L1PB4 LINE L1 5557 6376 -842 * 2458 170 31 19 chr3 167319015 167319502 -60205076 + L1PB4 LINE L1 6719 7211 -7 475 314 66 17 chr3 167320898 167321306 -60203272 + L1MEc LINE L1 1329 1756 -4640 1249 321 82 41 chr3 167321407 167322277 -60202301 + L2 LINE L2 909 1813 -1501 671 253 41 95 chr3 167322306 167322644 -60201934 - L1ME3A LINE L1 -34 6130 5813 1676 308 93 33 chr3 167322644 167323469 -60201109 + L2 LINE L2 1836 2710 -604 4697 193 32 21 chr3 167323469 167325466 -60199112 - L1PA16 LINE L1 -16 6853 4839 * 10533 181 60 21 chr3 167325461 167328405 -60196173 - L1PA16 LINE L1 -3699 3150 9 967 276 106 45 chr3 167328538 167329335 -60195243 - L1ME3A LINE L1 -308 5931 5090 1504 208 0 11 chr3 167329533 167329854 -60194724 - AluJb SINE Alu 0 318 1 867 243 154 21 chr3 167330061 167330497 -60194081 - L1ME3A LINE L1 -3432 2783 2290 348 64 0 0 chr3 167330521 167330555 -60194023 + (CA)n Simple_repeat Simple_repeat 1 81 0 348 64 0 0 chr3 167330555 167330602 -60193976 + (CA)n Simple_repeat Simple_repeat 2 48 0 369 293 34 57 chr3 167330614 167330869 -60193709 - L1ME3A LINE L1 -4081 2315 2069 959 200 56 5 chr3 167330869 167331064 -60193514 - MER3 DNA MER1_type -2 207 3 369 293 34 57 chr3 167331064 167331159 -60193419 - L1ME3A LINE L1 -4327 2069 1973 474 328 32 8 chr3 167331278 167331528 -60193050 - L1ME3A LINE L1 -4594 1802 1547 551 279 43 0 chr3 167331547 167331687 -60192891 - MLT1G1 LTR MaLR -449 146 1 1603 131 0 19 chr3 167331755 167332014 -60192564 - L1PA14 LINE L1 -50 6111 5858 312 100 0 0 chr3 167332014 167332050 -60192528 + L1PA15 LINE L1 6110 6159 -6 333 241 133 0 chr3 167332060 167332143 -60192435 - MIR SINE MIR -122 140 47 277 198 48 24 chr3 167332237 167332363 -60192215 - L1M4 LINE L1 -2852 3294 3166 672 293 58 103 chr3 167332413 167332571 -60192007 + L2 LINE L2 2803 2967 -346 1817 166 49 27 chr3 167332571 167332938 -60191640 - THE1C LTR MaLR 0 375 1 672 293 58 103 chr3 167332938 167333303 -60191275 + L2 LINE L2 2967 3312 -1 27 81 0 0 chr3 167333991 167334053 -60190525 + AT_rich Low_complexity Low_complexity 1 62 0 1407 224 20 14 chr3 167334761 167335109 -60189469 - L1ME1 LINE L1 -5 6161 5812 24 0 0 0 chr3 167335790 167335814 -60188764 + AT_rich Low_complexity Low_complexity 1 24 0 28 29 0 0 chr3 167337304 167337339 -60187239 + AT_rich Low_complexity Low_complexity 1 35 0 28 0 0 0 chr3 167338077 167338105 -60186473 + AT_rich Low_complexity Low_complexity 1 28 0 418 317 108 21 chr3 167339026 167339266 -60185312 + MIR SINE MIR 2 262 0 2511 94 3 25 chr3 167339843 167340206 -60184372 - THE1A LTR MaLR 0 355 1 10901 100 19 15 chr3 167340206 167341779 -60182799 - THE1A-int LTR MaLR 0 1580 1 2567 99 3 6 chr3 167341779 167342133 -60182445 - THE1A LTR MaLR 0 355 3 1903 159 10 0 chr3 167342313 167342614 -60181964 - AluSg SINE Alu -6 304 1 248 331 39 55 chr3 167342804 167342985 -60181593 + LTR40a LTR ERVL 159 336 -183 3334 176 32 84 chr3 167343048 167343901 -60180677 - L1MA7 LINE L1 -7 6284 5477 4554 185 41 8 chr3 167343904 167344845 -60179733 - L1MA6 LINE L1 -1 7718 6747 4379 248 48 36 chr3 167344846 167345036 -60179542 - L1MA6 LINE L1 -2868 4697 4511 198 71 0 0 chr3 167345036 167345064 -60179514 + (TTTTA)n Simple_repeat Simple_repeat 3 30 0 4379 248 48 36 chr3 167345064 167347753 -60176825 - L1MA6 LINE L1 -3054 4511 2055 571 172 0 55 chr3 167347988 167348133 -60176445 - L1MA7 LINE L1 -811 5480 5344 1004 197 10 10 chr3 167348133 167348326 -60176252 - MLT2B1 LTR ERVL -327 193 1 2169 164 42 30 chr3 167348327 167348760 -60175818 - ERVL-B1-B2 LTR ERVL -10 5754 5317 5795 179 8 5 chr3 167348760 167349756 -60174822 - ERVL-B1-B2 LTR ERVL -788 4976 3978 * 16275 192 49 26 chr3 167349747 167352972 -60171606 - ERVL-B1-B2 LTR ERVL -2419 3345 48 2164 199 70 38 chr3 167353012 167353510 -60171068 - MLT2B2 LTR ERVL 0 515 2 28 50 0 17 chr3 167353531 167353543 -60171035 + AT_rich Low_complexity Low_complexity 1 12 -47 2156 151 91 20 chr3 167353543 167353941 -60170637 - MSTA LTR MaLR 0 428 3 28 50 0 17 chr3 167353941 167353988 -60170590 + AT_rich Low_complexity Low_complexity 12 59 0 1961 108 3 31 chr3 167353996 167354284 -60170294 - AluSg SINE Alu -30 280 1 286 230 11 46 chr3 167354937 167355024 -60169554 + L2 LINE L2 2223 2306 -1008 480 132 13 0 chr3 167355024 167355100 -60169478 - THE1C LTR MaLR 0 375 299 1989 177 34 25 chr3 167355100 167355656 -60168922 - MLT2A2 LTR ERVL 0 554 1 2077 125 3 10 chr3 167355656 167355961 -60168617 - THE1C LTR MaLR -72 303 1 211 143 24 0 chr3 167355999 167356041 -60168537 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 262 304 71 75 chr3 167356041 167356307 -60168271 + L2 LINE L2 2348 2612 -702 1072 244 85 22 chr3 167356335 167356724 -60167854 - MER74B LTR ERVL -28 540 121 1795 264 11 27 chr3 167356767 167357321 -60167257 + L1PA12 LINE L1 2182 2726 -4855 261 79 66 13 chr3 167357342 167357418 -60167160 + (TA)n Simple_repeat Simple_repeat 2 81 0 1435 217 22 18 chr3 167357418 167357790 -60166788 + L1PA12 LINE L1 2711 3088 -4496 1634 169 76 10 chr3 167357790 167358104 -60166474 + MER1B DNA MER1_type 3 337 0 1435 217 22 18 chr3 167358104 167358160 -60166418 + L1PA12 LINE L1 3088 3142 -4442 298 248 0 67 chr3 167358317 167358422 -60166156 - L1PA12 LINE L1 -5400 2181 2084 1206 332 22 40 chr3 167358509 167359136 -60165442 - L1PA12 LINE L1 -6170 1404 789 12054 214 25 36 chr3 167360731 167362219 -60162359 - L1PA16 LINE L1 -2 6867 5364 1986 127 6 22 chr3 167362219 167362535 -60162043 + AluSq SINE Alu 1 311 -2 12054 214 25 36 chr3 167362535 167363481 -60161097 - L1PA16 LINE L1 -1505 5364 4409 239 71 24 0 chr3 167363481 167363523 -60161055 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 12054 214 25 36 chr3 167363523 167364849 -60159729 - L1PA16 LINE L1 -2460 4409 3070 2101 139 131 8 chr3 167364849 167365230 -60159348 + MSTA LTR MaLR 1 428 0 12054 214 25 36 chr3 167365230 167366201 -60158377 - L1PA16 LINE L1 -3799 3070 2202 2269 77 7 17 chr3 167366201 167366500 -60158078 + AluY SINE Alu 1 296 -15 12054 214 25 36 chr3 167366500 167367333 -60157245 - L1PA16 LINE L1 -4667 2202 1361 254 344 63 44 chr3 167367405 167367675 -60156903 - L1M2 LINE L1 -5782 1067 793 794 298 26 36 chr3 167367813 167368473 -60156105 - L1M2b LINE L1 -5502 2079 198 455 243 56 21 chr3 167368578 167368722 -60155856 - MER66A LTR ERV1 -45 433 285 639 208 121 100 chr3 167368778 167369153 -60155425 - MER41B LTR ERV1 -111 493 126 2084 95 0 27 chr3 167369282 167369577 -60155001 + AluSc SINE Alu 23 309 0 401 264 82 0 chr3 167369954 167370064 -60154514 + MER5B DNA MER1_type 1 119 -59 1385 205 123 55 chr3 167370905 167371359 -60153219 + MLT1D LTR MaLR 21 505 0 948 256 82 51 chr3 167371393 167371452 -60153126 - L1ME2 LINE L1 -4 6162 6106 1791 145 53 7 chr3 167371452 167371735 -60152843 - AluSx SINE Alu -16 296 1 948 256 82 51 chr3 167371735 167372030 -60152548 - L1ME2 LINE L1 -60 6106 5797 8761 174 50 107 chr3 167372030 167373754 -60150824 - Tigger5 DNA MER2_type 0 2323 503 2288 124 60 14 chr3 167373754 167374101 -60150477 - THE1B LTR MaLR 0 364 2 8761 174 50 107 chr3 167374101 167374244 -60150334 - Tigger5 DNA MER2_type -1820 503 353 1194 92 0 0 chr3 167374244 167374396 -60150182 + AluSc SINE Alu 141 292 -17 8761 174 50 107 chr3 167374396 167374803 -60149775 - Tigger5 DNA MER2_type -1970 353 35 3285 236 44 8 chr3 167375040 167376249 -60148329 + L1MB7 LINE L1 4931 6175 -9 26 0 0 0 chr3 167376975 167377001 -60147577 + AT_rich Low_complexity Low_complexity 1 26 0 430 327 39 0 chr3 167377621 167377774 -60146804 - MIR SINE MIR -8 254 96 240 86 0 0 chr3 167380561 167380596 -60143982 + (TG)n Simple_repeat Simple_repeat 2 36 0 1585 149 6 84 chr3 167380969 167381290 -60143288 - AluJo SINE Alu -16 296 1 22 0 0 0 chr3 167382316 167382338 -60142240 + AT_rich Low_complexity Low_complexity 1 22 0 1192 70 18 0 chr3 167382607 167382778 -60141800 + (TTTC)n Simple_repeat Simple_repeat 2 175 0 219 211 0 0 chr3 167382778 167382816 -60141762 + polypyrimidine Low_complexity Low_complexity 3 40 0 2361 87 7 0 chr3 167382816 167383116 -60141462 - AluSg1 SINE Alu -7 302 1 265 360 44 15 chr3 167383126 167383262 -60141316 - MIR3 SINE MIR -66 142 3 451 317 91 85 chr3 167383567 167384234 -60140344 + L2 LINE L2 2633 3311 -2 1738 190 67 15 chr3 167384345 167384687 -60139891 + MLT1A1 LTR MaLR 1 360 -5 1325 348 52 21 chr3 167384704 167385422 -60139156 + ERVL LTR ERVL 3999 4738 -1026 435 345 61 0 chr3 167385527 167385692 -60138886 + ERVL LTR ERVL 4852 5026 -738 195 42 0 0 chr3 167386032 167386056 -60138522 + (CA)n Simple_repeat Simple_repeat 2 25 0 24 0 0 0 chr3 167386085 167386109 -60138469 + AT_rich Low_complexity Low_complexity 1 24 0 273 240 83 30 chr3 167386207 167386334 -60138244 + Ricksha DNA DNA 189 330 -1716 1463 289 154 45 chr3 167386969 167388068 -60136510 + L2 LINE L2 2087 3313 0 286 264 0 0 chr3 167388204 167388276 -60136302 + (CA)n Simple_repeat Simple_repeat 1 72 0 2263 90 0 16 chr3 167388929 167389240 -60135338 + AluSc SINE Alu 1 306 -3 516 383 13 4 chr3 167390063 167390298 -60134280 + MIR SINE MIR 26 262 0 46 0 0 0 chr3 167391972 167392018 -60132560 + AT_rich Low_complexity Low_complexity 1 46 0 22 0 0 0 chr3 167392025 167392047 -60132531 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 167392351 167392372 -60132206 + AT_rich Low_complexity Low_complexity 1 21 0 334 312 84 69 chr3 167393112 167393458 -60131120 - HAL1b LINE L1 -681 667 317 314 279 23 0 chr3 167393618 167393704 -60130874 + L2 LINE L2 3226 3313 0 25 51 0 0 chr3 167395664 167395703 -60128875 + AT_rich Low_complexity Low_complexity 1 39 0 207 0 0 0 chr3 167396336 167396359 -60128219 + (CA)n Simple_repeat Simple_repeat 2 24 0 27 62 0 0 chr3 167396809 167396857 -60127721 + AT_rich Low_complexity Low_complexity 1 48 0 281 333 13 53 chr3 167397176 167397326 -60127252 + L2 LINE L2 2914 3057 -215 1187 274 136 33 chr3 167397392 167397432 -60127146 - HsTC2a DNA Tc2 -1156 744 710 261 0 0 0 chr3 167397432 167397461 -60127117 + (TTTTA)n Simple_repeat Simple_repeat 5 33 0 1187 274 136 33 chr3 167397461 167398091 -60126487 - HsTC2a DNA Tc2 -1190 710 5 659 288 0 6 chr3 167398108 167398278 -60126300 - MIR SINE MIR -31 231 63 1828 237 101 12 chr3 167398918 167399483 -60125095 - L1ME3A LINE L1 -1 6169 5555 214 340 85 0 chr3 167399700 167399806 -60124772 - MIR SINE MIR -99 163 49 2314 103 0 0 chr3 167399810 167400112 -60124466 - AluSx SINE Alu -10 302 1 228 67 0 0 chr3 167401738 167401768 -60122810 + (GAAA)n Simple_repeat Simple_repeat 2 31 0 21 0 0 0 chr3 167403737 167403758 -60120820 + AT_rich Low_complexity Low_complexity 1 21 0 1209 180 8 0 chr3 167403761 167404005 -60120573 - L1MA8 LINE L1 -1 6290 6045 322 71 0 0 chr3 167404006 167404048 -60120530 - L1MA8 LINE L1 -311 5980 5939 246 128 21 0 chr3 167404319 167404366 -60120212 - Alu SINE Alu -2 306 259 257 156 0 0 chr3 167405478 167405523 -60119055 + Alu SINE Alu 259 303 -5 365 104 20 0 chr3 167405795 167405897 -60118681 + L1MA8 LINE L1 5939 6105 -186 200 217 0 0 chr3 167405919 167405965 -60118613 + A-rich Low_complexity Low_complexity 4 49 0 298 356 62 42 chr3 167406661 167406998 -60117580 - L2 LINE L2 -358 2956 2613 227 170 38 0 chr3 167407621 167407674 -60116904 + (TA)n Simple_repeat Simple_repeat 1 55 0 201 188 21 10 chr3 167407703 167407799 -60116779 + (TA)n Simple_repeat Simple_repeat 1 97 0 546 204 0 29 chr3 167407801 167407904 -60116674 - FLAM_A SINE Alu -26 116 17 1592 201 35 35 chr3 167407945 167408293 -60116285 + L1MDa LINE L1 19 366 -6174 189 107 0 0 chr3 167408355 167408383 -60116195 + (TG)n Simple_repeat Simple_repeat 1 28 0 415 104 30 0 chr3 167408552 167408619 -60115959 - MSTA LTR MaLR 0 428 360 696 236 27 0 chr3 167408727 167408875 -60115703 - MSTB LTR MaLR -274 152 1 23 33 0 0 chr3 167409435 167409465 -60115113 + AT_rich Low_complexity Low_complexity 1 30 0 197 295 51 0 chr3 167409797 167409875 -60114703 - MIR SINE MIR -96 166 85 21 0 0 0 chr3 167410080 167410101 -60114477 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 167411228 167411258 -60113320 + AT_rich Low_complexity Low_complexity 1 30 0 207 0 0 0 chr3 167413650 167413673 -60110905 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 234 0 0 0 chr3 167413672 167413698 -60110880 + (CA)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr3 167414395 167414416 -60110162 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 167414640 167414660 -60109918 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 230 203 0 16 chr3 167415402 167415466 -60109112 + G-rich Low_complexity Low_complexity 4 66 0 252 0 0 0 chr3 167415485 167415513 -60109065 + (CA)n Simple_repeat Simple_repeat 2 29 0 200 335 51 44 chr3 167415674 167415832 -60108746 + MIR SINE MIR 48 206 -56 609 245 39 0 chr3 167415900 167416055 -60108523 - MIR SINE MIR -10 252 92 1490 229 48 25 chr3 167416896 167417249 -60107329 - MLT1E LTR MaLR -7 586 226 593 167 0 0 chr3 167417372 167417468 -60107110 + AluJo/FLAM SINE Alu 13 108 -204 1513 173 50 4 chr3 167417468 167417566 -60107012 + AluJo SINE Alu 22 114 -198 396 0 0 0 chr3 167417566 167417610 -60106968 + (TAAA)n Simple_repeat Simple_repeat 3 46 0 1513 173 50 4 chr3 167417610 167417771 -60106807 + AluJo SINE Alu 114 293 -19 416 361 50 15 chr3 167418003 167418205 -60106373 - L2 LINE L2 -2835 479 271 945 71 0 0 chr3 167418507 167418633 -60105945 + (CAT)n Simple_repeat Simple_repeat 2 127 0 1639 250 22 22 chr3 167418965 167419425 -60105153 - MLT1C LTR MaLR 0 467 8 1682 168 37 63 chr3 167422254 167422635 -60101943 + MLT1B LTR MaLR 1 371 -19 2173 82 0 4 chr3 167422801 167423100 -60101478 + AluSc SINE Alu 1 298 0 351 282 51 0 chr3 167423745 167423851 -60100727 + MIR SINE MIR 43 163 -45 491 255 30 0 chr3 167424020 167424132 -60100446 - MIR3 SINE MIR -35 173 58 186 43 0 0 chr3 167424667 167424690 -60099888 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1934 117 33 0 chr3 167424693 167424966 -60099612 - AluSx SINE Alu -30 282 1 407 341 85 52 chr3 167425778 167426361 -60098217 + L2 LINE L2 2703 3309 -4 207 259 17 0 chr3 167426983 167427041 -60097537 + CT-rich Low_complexity Low_complexity 3 61 0 2025 106 0 3 chr3 167427221 167427524 -60097054 + AluSc SINE Alu 1 302 0 395 192 17 17 chr3 167428608 167428728 -60095850 + CT-rich Low_complexity Low_complexity 1 120 0 35 54 0 0 chr3 167429338 167429394 -60095184 + AT_rich Low_complexity Low_complexity 1 56 0 1235 280 88 20 chr3 167429745 167430152 -60094426 - MLT1J LTR MaLR -58 453 19 209 319 66 0 chr3 167430373 167430464 -60094114 + MIR SINE MIR 57 153 -109 424 306 35 29 chr3 167430570 167430740 -60093838 - MIR SINE MIR 0 262 92 22 0 0 0 chr3 167431886 167431908 -60092670 + AT_rich Low_complexity Low_complexity 1 22 0 486 258 89 21 chr3 167432471 167432661 -60091917 + LTR67 LTR ERVL 348 550 -7 217 231 13 26 chr3 167432692 167432770 -60091808 + (TTTA)n Simple_repeat Simple_repeat 1 77 0 2107 87 0 58 chr3 167432845 167433156 -60091422 + AluSc SINE Alu 1 293 -16 231 222 62 0 chr3 167433646 167433727 -60090851 - L1MB8 LINE L1 -12 6166 6081 * 1429 241 93 4 chr3 167433717 167434210 -60090368 - L1M4 LINE L1 -1673 4473 3937 578 334 22 7 chr3 167434460 167434669 -60089909 + MIR SINE MIR 16 227 -35 21 36 0 0 chr3 167435663 167435691 -60088887 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr3 167436071 167436101 -60088477 + AT_rich Low_complexity Low_complexity 1 30 0 204 93 37 37 chr3 167437363 167437417 -60087161 + T-rich Low_complexity Low_complexity 1 54 0 917 351 51 29 chr3 167437446 167437995 -60086583 + L2 LINE L2 2145 2705 -609 410 311 58 21 chr3 167438245 167438435 -60086143 + L2 LINE L2 3113 3309 -4 25 65 0 0 chr3 167439360 167439406 -60085172 + AT_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr3 167439516 167439545 -60085033 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr3 167440882 167440913 -60083665 + AT_rich Low_complexity Low_complexity 1 31 0 4828 193 21 4 chr3 167440913 167442610 -60081968 - L1PB4 LINE L1 -11 6145 4426 685 258 96 5 chr3 167442634 167442832 -60081746 - MIR SINE MIR -15 247 32 334 323 0 50 chr3 167442879 167443049 -60081529 - MER5B DNA MER1_type -20 158 8 1278 243 109 6 chr3 167445661 167446066 -60078512 + MLT1C LTR MaLR 26 467 0 2096 235 27 26 chr3 167446066 167446835 -60077743 + MLT1C-int LTR MaLR 1 887 -484 2020 183 22 93 chr3 167447055 167447519 -60077059 + MLT1C-int LTR MaLR 937 1367 -4 303 378 34 7 chr3 167447544 167447692 -60076886 + L2 LINE L2 1859 2010 -1304 442 356 64 18 chr3 167447969 167448250 -60076328 - L1ME3A LINE L1 -250 5920 5627 413 272 47 18 chr3 167448272 167448548 -60076030 - L1ME3A LINE L1 -1539 4607 4324 250 300 146 0 chr3 167448569 167448679 -60075899 + L2 LINE L2 3188 3313 0 2084 103 0 26 chr3 167448757 167449067 -60075511 - AluSx SINE Alu -6 306 5 31 68 0 0 chr3 167450661 167450720 -60073858 + AT_rich Low_complexity Low_complexity 1 59 0 277 290 6 12 chr3 167452907 167453037 -60071541 + L1MC4a LINE L1 4713 4840 -1306 22 56 0 0 chr3 167453267 167453303 -60071275 + AT_rich Low_complexity Low_complexity 1 36 0 442 329 55 84 chr3 167453534 167454023 -60070555 + L1MC4a LINE L1 5437 5911 -1897 21 0 0 0 chr3 167454134 167454155 -60070423 + AT_rich Low_complexity Low_complexity 1 21 0 324 333 7 30 chr3 167454287 167454422 -60070156 - MIR SINE MIR -110 152 21 339 136 0 0 chr3 167454636 167454695 -60069883 + (T)n Simple_repeat Simple_repeat 1 59 0 239 365 0 12 chr3 167454732 167454817 -60069761 + MIR SINE MIR 2 85 -177 614 367 85 18 chr3 167454845 167455404 -60069174 + L2 LINE L2 2427 3019 -294 826 170 7 19 chr3 167455404 167455549 -60069029 - MLT1D LTR MaLR -57 433 251 402 261 124 21 chr3 167455669 167455910 -60068668 - L1ME LINE L1 -5285 785 520 514 290 155 30 chr3 167456177 167456377 -60068201 + MLT1G1 LTR MaLR 286 510 -85 25 0 0 0 chr3 167456480 167456505 -60068073 + AT_rich Low_complexity Low_complexity 1 25 0 331 316 110 55 chr3 167456791 167457359 -60067219 - L1ME LINE L1 -370 5751 5155 437 309 65 6 chr3 167457384 167457552 -60067026 - MLT1D LTR MaLR -417 178 1 240 204 19 0 chr3 167457598 167457652 -60066926 - L1MC4 LINE L1 -1339 6703 6649 460 259 9 0 chr3 167457772 167457884 -60066694 - HAL1 LINE L1 -932 1575 1463 200 196 0 0 chr3 167457888 167457934 -60066644 + (TG)n Simple_repeat Simple_repeat 2 47 0 23 68 0 0 chr3 167458597 167458641 -60065937 + AT_rich Low_complexity Low_complexity 1 44 0 231 336 48 20 chr3 167459566 167459712 -60064866 + L2 LINE L2 2911 3060 -212 400 296 9 0 chr3 167459841 167459949 -60064629 - MIR SINE MIR -146 116 8 28 61 0 0 chr3 167460486 167460535 -60064043 + AT_rich Low_complexity Low_complexity 1 49 0 29 28 0 0 chr3 167461830 167461866 -60062712 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr3 167462856 167462885 -60061693 + AT_rich Low_complexity Low_complexity 1 29 0 414 0 0 0 chr3 167463015 167463061 -60061517 + (TG)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr3 167463798 167463820 -60060758 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr3 167464739 167464763 -60059815 + AT_rich Low_complexity Low_complexity 1 24 0 301 236 0 0 chr3 167467078 167467133 -60057445 - AluS SINE Alu -235 66 12 1152 134 0 0 chr3 167467135 167467299 -60057279 + AluSg/x SINE Alu 119 282 -30 348 24 0 0 chr3 167467302 167467343 -60057235 + (TAA)n Simple_repeat Simple_repeat 2 42 0 25 0 0 0 chr3 167467908 167467933 -60056645 + AT_rich Low_complexity Low_complexity 1 25 0 2638 110 86 6 chr3 167468295 167468719 -60055859 - MER1A DNA MER1_type 0 529 25 2218 103 0 10 chr3 167469360 167469672 -60054906 + AluY SINE Alu 1 309 -2 21 0 0 0 chr3 167469933 167469954 -60054624 + AT_rich Low_complexity Low_complexity 1 21 0 186 143 0 0 chr3 167471550 167471585 -60052993 + (TC)n Simple_repeat Simple_repeat 1 35 0 234 0 0 0 chr3 167472202 167472228 -60052350 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1488 71 0 5 chr3 167472587 167472784 -60051794 + AluY SINE Alu 110 305 -6 22 35 0 0 chr3 167473141 167473170 -60051408 + AT_rich Low_complexity Low_complexity 1 29 0 2261 89 0 0 chr3 167474222 167474513 -60050065 - AluSc SINE Alu -14 295 5 440 202 5 13 chr3 167478597 167478707 -60045871 + L1MA9 LINE L1 6078 6200 -103 326 309 144 0 chr3 167478708 167478902 -60045676 + L1ME3 LINE L1 1717 1938 -4602 581 76 0 0 chr3 167479297 167479376 -60045202 + MADE1 DNA Mariner 1 79 -1 26 30 0 0 chr3 167479870 167479903 -60044675 + AT_rich Low_complexity Low_complexity 1 33 0 313 318 88 24 chr3 167479926 167480435 -60044143 + L1ME3 LINE L1 3305 3846 -2694 729 307 92 61 chr3 167480600 167482019 -60042559 + L1ME3 LINE L1 4233 5700 -840 479 320 127 32 chr3 167482022 167482570 -60042008 + L1ME3 LINE L1 5707 6308 -248 547 318 86 5 chr3 167482827 167483047 -60041531 - MIR SINE MIR -5 257 20 487 278 59 28 chr3 167483303 167483591 -60040987 + L1M4 LINE L1 2214 2510 -3636 1607 249 10 73 chr3 167483616 167483872 -60040706 + MLT2B1 LTR ERVL 6 216 -304 1627 76 0 21 chr3 167483872 167484109 -60040469 - L1PA5 LINE L1 -1 6153 5922 1607 249 10 73 chr3 167484109 167484359 -60040219 + MLT2B1 LTR ERVL 216 480 -40 242 333 0 0 chr3 167484360 167484444 -60040134 + (CATATA)n Simple_repeat Simple_repeat 5 88 0 365 290 94 53 chr3 167484892 167485137 -60039441 + L1MC4a LINE L1 5666 5920 -1888 22 0 0 0 chr3 167485471 167485493 -60039085 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr3 167486216 167486245 -60038333 + AT_rich Low_complexity Low_complexity 1 29 0 333 0 0 0 chr3 167486482 167486519 -60038059 + (TTTG)n Simple_repeat Simple_repeat 2 38 0 379 268 9 9 chr3 167486520 167486632 -60037946 + L2 LINE L2 2198 2309 -1005 2216 91 19 3 chr3 167486840 167487147 -60037431 + AluSx SINE Alu 1 312 0 2416 25 11 0 chr3 167487173 167487452 -60037126 + AluYa5 SINE Alu 27 308 -3 1744 127 0 86 chr3 167487656 167487970 -60036608 + AluSx SINE Alu 1 287 -25 2409 53 0 3 chr3 167488172 167488476 -60036102 - AluY SINE Alu -8 303 1 2457 57 0 13 chr3 167489302 167489616 -60034962 - AluY SINE Alu -1 310 1 203 313 30 50 chr3 167489618 167489717 -60034861 - MER5A DNA MER1_type -50 139 43 434 266 30 52 chr3 167490072 167490339 -60034239 + L1ME LINE L1 5258 5511 -651 26 50 0 0 chr3 167490448 167490488 -60034090 + AT_rich Low_complexity Low_complexity 1 40 0 4297 161 29 8 chr3 167492931 167493722 -60030856 + L1PA16 LINE L1 5357 6164 -2 22 35 0 0 chr3 167494703 167494732 -60029846 + AT_rich Low_complexity Low_complexity 1 29 0 3019 133 43 0 chr3 167496612 167497101 -60027477 + MER41E LTR ERV1 3 512 0 1943 116 17 7 chr3 167500561 167500853 -60023725 + AluSg SINE Alu 6 300 -10 230 241 52 0 chr3 167502173 167502231 -60022347 - L2 LINE L2 -66 3247 3187 364 259 58 36 chr3 167504662 167504700 -60019878 + MIR SINE MIR 121 157 -105 2031 206 25 21 chr3 167504700 167505170 -60019408 + MER70A LTR ERVL 1 472 0 364 259 58 36 chr3 167505170 167505270 -60019308 + MIR SINE MIR 157 262 0 208 309 72 21 chr3 167505309 167505406 -60019172 + L3 LINE CR1 1094 1195 -382 211 354 71 35 chr3 167505599 167505797 -60018781 + L3 LINE CR1 1370 1574 -3 3178 141 172 70 chr3 167506508 167507871 -60016707 - pTR5 LTR ERV1 0 2606 1524 230 321 12 0 chr3 167507898 167507979 -60016599 + MIR SINE MIR 61 142 -120 266 282 117 0 chr3 167508238 167508341 -60016237 + MLT1L LTR MaLR 175 289 -326 269 288 0 0 chr3 167508895 167508954 -60015624 - LTR33A LTR ERVL -335 188 130 252 180 0 0 chr3 167509340 167509390 -60015188 - L2 LINE L2 0 3313 3264 182 326 76 30 chr3 167509443 167509575 -60015003 + L2 LINE L2 2946 3083 -189 953 204 138 34 chr3 167509890 167510159 -60014419 - AluJo SINE Alu -5 307 11 264 309 56 24 chr3 167510518 167510644 -60013934 - MIR SINE MIR -13 249 120 22 0 0 0 chr3 167512556 167512578 -60012000 + AT_rich Low_complexity Low_complexity 1 22 0 214 302 179 0 chr3 167514461 167514567 -60010011 - L2 LINE L2 0 3313 3189 184 389 28 0 chr3 167516007 167516079 -60008499 + MIR SINE MIR 4 77 -185 367 235 119 51 chr3 167516182 167516535 -60008043 - Charlie7 DNA MER1_type -29 2583 2207 726 222 156 26 chr3 167516571 167516873 -60007705 - Charlie7 DNA MER1_type -1952 660 320 26 0 0 0 chr3 167516951 167516977 -60007601 + AT_rich Low_complexity Low_complexity 1 26 0 485 264 57 0 chr3 167517428 167517534 -60007044 + FAM SINE Alu 6 117 -68 26 0 0 0 chr3 167517794 167517820 -60006758 + AT_rich Low_complexity Low_complexity 1 26 0 1314 245 45 45 chr3 167518127 167518523 -60006055 + MSTD LTR MaLR 1 396 0 464 191 0 12 chr3 167518883 167518967 -60005611 - Tigger5 DNA MER2_type -2240 83 1 380 206 0 76 chr3 167518980 167519024 -60005554 + Tigger5 DNA MER2_type 2239 2274 -49 1593 209 50 19 chr3 167519024 167519441 -60005137 + MSTB1 LTR MaLR 3 432 0 380 206 0 76 chr3 167519441 167519488 -60005090 + Tigger5 DNA MER2_type 2274 2323 0 21 0 0 0 chr3 167520097 167520118 -60004460 + AT_rich Low_complexity Low_complexity 1 21 0 1148 172 10 0 chr3 167520459 167520663 -60003915 - L1MB1 LINE L1 -70 6098 5893 1540 150 274 3 chr3 167520747 167521087 -60003491 - MSTB1 LTR MaLR 0 432 1 2460 49 7 0 chr3 167521371 167521677 -60002901 + AluY SINE Alu 1 308 -3 354 297 64 81 chr3 167521797 167522146 -60002432 - MLT1I LTR MaLR 0 409 71 258 354 91 11 chr3 167522390 167522565 -60002013 - MIR3 SINE MIR -1 207 19 23 54 0 0 chr3 167523937 167523974 -60000604 + AT_rich Low_complexity Low_complexity 1 37 0 246 257 99 10 chr3 167524403 167524504 -60000074 - L1M4 LINE L1 -2294 3852 3743 968 157 22 7 chr3 167525103 167525507 -59999071 + GA-rich Low_complexity Low_complexity 1 410 0 2671 91 3 0 chr3 167525569 167525922 -59998656 + THE1A LTR MaLR 1 354 -1 9923 213 13 9 chr3 167527007 167530331 -59994247 + L1PA15 LINE L1 2827 6163 -2 23 0 0 0 chr3 167530443 167530466 -59994112 + AT_rich Low_complexity Low_complexity 1 23 0 207 0 0 0 chr3 167533201 167533224 -59991354 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 282 318 114 15 chr3 167534186 167534318 -59990260 + MER91A DNA MER1_type 1 145 -51 2265 89 0 3 chr3 167534365 167534658 -59989920 - AluSg SINE Alu -18 292 1 290 342 99 58 chr3 167534878 167535273 -59989305 + L2 LINE L2 2841 3251 -62 387 324 55 61 chr3 167535328 167535655 -59988923 - MLT1J LTR MaLR -90 421 97 683 313 82 0 chr3 167535876 167536191 -59988387 + L1MC/D LINE L1 5285 5651 -512 22 35 0 0 chr3 167536909 167536938 -59987640 + AT_rich Low_complexity Low_complexity 1 29 0 576 183 0 0 chr3 167537190 167537283 -59987295 - Tigger3(Golem) DNA MER2_type 0 3037 2945 335 230 68 0 chr3 167537376 167537450 -59987128 - Tigger3(Golem) DNA MER2_type -2949 80 2 317 198 12 0 chr3 167537450 167537531 -59987047 + (TATATG)n Simple_repeat Simple_repeat 2 83 0 227 230 135 27 chr3 167538768 167538842 -59985736 - L1M4 LINE L1 -1565 4581 4500 727 306 78 26 chr3 167538957 167539401 -59985177 - L1M4 LINE L1 -1856 4290 3808 541 266 8 8 chr3 167539401 167539525 -59985053 + FLAM_A SINE Alu 1 124 -9 727 306 78 26 chr3 167539525 167539659 -59984919 - L1M4 LINE L1 -2338 3808 3682 1499 196 39 4 chr3 167539667 167539947 -59984631 - AluSx SINE Alu -22 290 1 25 0 0 0 chr3 167539947 167539972 -59984606 + AT_rich Low_complexity Low_complexity 1 25 0 1252 234 65 15 chr3 167540013 167540415 -59984163 + L1ME1 LINE L1 50 471 -5952 1837 251 82 10 chr3 167540976 167541657 -59982921 + L1M4 LINE L1 3085 3814 -2332 1333 254 110 16 chr3 167541662 167542296 -59982282 + L1ME1 LINE L1 3782 4475 -2466 * 2363 239 56 49 chr3 167542281 167543079 -59981499 + L1ME1 LINE L1 6114 6917 -44 401 204 42 63 chr3 167542993 167543135 -59981443 + L1MA10 LINE L1 6991 7129 0 * 598 267 61 24 chr3 167543132 167543379 -59981199 - L1M4 LINE L1 -3600 2546 2291 333 62 0 0 chr3 167543403 167543451 -59981127 + (CA)n Simple_repeat Simple_repeat 2 49 0 548 161 0 0 chr3 167543571 167543664 -59980914 + MSTA LTR MaLR 1 93 -335 23706 27 0 0 chr3 167543664 167547265 -59977313 + L1PA2 LINE L1 2544 6144 -11 198 103 0 0 chr3 167547276 167547305 -59977273 + (A)n Simple_repeat Simple_repeat 1 29 0 28411 106 11 6 chr3 167548415 167553586 -59970992 - L1PA7 LINE L1 -1 6153 963 280 391 98 0 chr3 167555737 167555870 -59968708 - L2 LINE L2 0 3272 3127 2976 170 32 73 chr3 167555909 167556744 -59967834 - L1M1 LINE L1 -743 5403 4640 3648 175 13 16 chr3 167556752 167557444 -59967134 + L1MA5 LINE L1 5487 6176 -124 1472 134 0 0 chr3 167557442 167557673 -59966905 + L1PA8 LINE L1 3271 3501 -2645 * 5558 109 0 1 chr3 167557673 167558476 -59966102 + L1PA8 LINE L1 5368 6171 -1 5412 145 10 7 chr3 167558482 167559433 -59965145 + L1PA15 LINE L1 5318 6300 0 239 191 15 15 chr3 167559798 167559866 -59964712 + (CATATA)n Simple_repeat Simple_repeat 4 71 0 224 402 108 19 chr3 167560015 167560229 -59964349 - MIR SINE MIR -2 260 28 5032 162 49 6 chr3 167560708 167562247 -59962331 + L1MA8 LINE L1 4692 6290 -1 2025 116 27 0 chr3 167563250 167563544 -59961034 - AluSx SINE Alu -9 303 2 301 392 23 15 chr3 167563634 167563764 -59960814 + MIR3 SINE MIR 32 162 -46 26 0 0 0 chr3 167563977 167564003 -59960575 + AT_rich Low_complexity Low_complexity 1 26 0 740 355 131 14 chr3 167564704 167565262 -59959316 + L2 LINE L2 1830 2452 -862 29 0 0 0 chr3 167565776 167565805 -59958773 + AT_rich Low_complexity Low_complexity 1 29 0 228 122 0 0 chr3 167567114 167567155 -59957423 + (TG)n Simple_repeat Simple_repeat 2 42 0 412 322 26 13 chr3 167567266 167567418 -59957160 - L2 LINE L2 0 3313 3160 372 259 132 10 chr3 167567869 167568074 -59956504 + L1ME LINE L1 3740 3969 -2177 276 264 58 0 chr3 167568195 167568282 -59956296 + GA-rich Low_complexity Low_complexity 4 95 0 235 300 54 0 chr3 167568291 167568421 -59956157 + L1ME LINE L1 4183 4319 -1827 214 167 0 0 chr3 167568437 167568473 -59956105 + (TATG)n Simple_repeat Simple_repeat 3 38 0 1357 269 75 43 chr3 167568479 167569548 -59955030 + L1ME LINE L1 4334 5449 -715 472 122 0 0 chr3 167569548 167569630 -59954948 + L1MA4 LINE L1 6214 6295 -5 1357 269 75 43 chr3 167569630 167569829 -59954749 + L1ME LINE L1 5449 5640 -524 898 305 70 7 chr3 167570164 167570466 -59954112 + LTR16B LTR ERVL 3 323 -141 396 132 0 44 chr3 167570620 167570711 -59953867 + (GGAA)n Simple_repeat Simple_repeat 1 87 0 1289 199 155 6 chr3 167570901 167571217 -59953361 - MLT1A1 LTR MaLR 0 365 3 30 0 0 0 chr3 167571372 167571402 -59953176 + AT_rich Low_complexity Low_complexity 1 30 0 3459 173 39 17 chr3 167571736 167572383 -59952195 + Tigger1 DNA MER2_type 1 661 -1757 * 4342 153 24 79 chr3 167572380 167573287 -59951291 + Tigger1 DNA MER2_type 1562 2418 0 189 341 44 0 chr3 167573316 167573407 -59951171 - MIR SINE MIR -96 166 72 299 44 22 0 chr3 167573771 167573816 -59950762 + (CA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr3 167574406 167574428 -59950150 + AT_rich Low_complexity Low_complexity 1 22 0 1542 188 7 7 chr3 167574814 167575096 -59949482 + AluJo SINE Alu 6 287 -25 244 108 138 15 chr3 167576049 167576114 -59948464 - MADE1 DNA Mariner -7 73 1 1085 99 43 0 chr3 167777943 167778104 -59746474 + L1MA5 LINE L1 6131 6298 -2 289 331 63 24 chr3 167778253 167778380 -59746198 + L1ME LINE L1 328 459 -5937 290 319 53 53 chr3 167779100 167779555 -59745023 + L1ME LINE L1 786 1240 -5169 416 330 40 27 chr3 167779964 167780188 -59744390 - L1MEc LINE L1 -6125 271 45 667 314 11 0 chr3 167780271 167780459 -59744119 + MIR SINE MIR 12 201 -61 4162 212 48 19 chr3 167780465 167781344 -59743234 + L1MA5A LINE L1 785 1688 -5878 3003 218 7 67 chr3 167781347 167782229 -59742349 + L1MA5A LINE L1 3493 4341 -3224 329 264 31 16 chr3 167784418 167784547 -59740031 + GA-rich Low_complexity Low_complexity 4 134 0 1113 218 113 0 chr3 167784703 167785038 -59739540 + L1MA5A LINE L1 4304 4676 -2889 509 175 0 19 chr3 167785031 167785134 -59739444 + L1MA5A LINE L1 4928 5028 -2537 * 1366 145 29 4 chr3 167785141 167785383 -59739195 - L1MA5A LINE L1 -5 6292 6045 5298 164 52 9 chr3 167785394 167787056 -59737522 + L1MA5A LINE L1 5977 7713 -3 863 242 81 33 chr3 167787550 167787909 -59736669 - L1MEc LINE L1 -4135 2261 1886 808 261 0 0 chr3 167787937 167788113 -59736465 + L1PA16 LINE L1 5942 6117 -49 1699 202 83 45 chr3 167788165 167788247 -59736331 + L1ME2 LINE L1 5630 5707 -457 1810 171 125 16 chr3 167788247 167788632 -59735946 - MSTA LTR MaLR 0 428 2 8078 154 11 71 chr3 167788633 167788998 -59735580 - MSTA-int LTR MaLR 0 1580 1195 2063 124 0 7 chr3 167788998 167789288 -59735290 - AluSx SINE Alu -24 288 1 8078 154 11 71 chr3 167789288 167790601 -59733977 - MSTA-int LTR MaLR -385 1195 3 1886 168 119 16 chr3 167790603 167790991 -59733587 - MSTA LTR MaLR 0 428 1 1699 202 83 45 chr3 167790991 167791409 -59733169 + L1ME2 LINE L1 5707 6154 -10 1878 139 11 0 chr3 167791594 167791868 -59732710 + AluSc SINE Alu 16 292 -17 200 303 106 30 chr3 167792016 167792046 -59732532 + MIR SINE MIR 57 83 -179 1714 256 87 24 chr3 167792046 167792631 -59731947 + MLT1E3 LTR MaLR 3 624 0 200 303 106 30 chr3 167792631 167792732 -59731846 + MIR SINE MIR 83 198 -64 235 336 0 19 chr3 167792741 167792845 -59731733 + MIR SINE MIR 135 236 -26 6179 28 0 1 chr3 167793263 167793991 -59730587 + L1PA2 LINE L1 5428 6154 -1 2079 181 70 113 chr3 167794013 167794297 -59730281 + MER69 DNA AcHobo 1451 1746 -780 564 96 53 0 chr3 167794297 167794391 -59730187 + L1MA9 LINE L1 6212 6310 -2 2079 181 70 113 chr3 167794391 167795017 -59729561 + MER69 DNA AcHobo 1746 2322 -204 451 386 105 45 chr3 167796140 167797751 -59726827 + L2 LINE L2 1559 3272 0 22 0 0 0 chr3 167798301 167798323 -59726255 + AT_rich Low_complexity Low_complexity 1 22 0 309 26 0 0 chr3 167799660 167799698 -59724880 + (TG)n Simple_repeat Simple_repeat 1 38 0 333 93 0 0 chr3 167799699 167799753 -59724825 + (GA)n Simple_repeat Simple_repeat 2 55 0 5335 93 24 20 chr3 167800227 167800761 -59723817 + L1PA12 LINE L1 5363 5903 -265 2070 76 6 64 chr3 167800761 167801089 -59723489 + AluY SINE Alu 3 311 0 5335 93 24 20 chr3 167801089 167801357 -59723221 + L1PA12 LINE L1 5903 6168 0 268 222 18 99 chr3 167801448 167801619 -59722959 + L1ME4a LINE L1 5935 6091 -30 1362 219 55 5 chr3 167801654 167802056 -59722522 + L1M4 LINE L1 2841 3262 -2884 479 233 17 9 chr3 167802073 167802189 -59722389 - FRAM SINE Alu -6 170 54 216 0 0 0 chr3 167802342 167802366 -59722212 + (A)n Simple_repeat Simple_repeat 1 24 0 17795 182 124 20 chr3 167802703 167805270 -59719308 + L1M1 LINE L1 17 2318 -5247 182 36 0 36 chr3 167805270 167805298 -59719280 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 17795 182 124 20 chr3 167805298 167807713 -59716865 + L1M1 LINE L1 2318 5596 -1969 388 313 88 18 chr3 167807994 167808278 -59716300 - L1MC4a LINE L1 -1880 5928 5625 1853 130 168 11 chr3 167808357 167808727 -59715851 + MSTA LTR MaLR 1 428 0 280 329 146 18 chr3 167809468 167809748 -59714830 - L2 LINE L2 -2027 1287 972 1473 136 0 0 chr3 167809869 167810083 -59714495 + AluSq SINE Alu 1 214 -99 467 113 10 72 chr3 167810125 167810222 -59714356 + L1PB2 LINE L1 6057 6147 -4 5107 73 9 3 chr3 167811018 167811706 -59712872 + L1PA7 LINE L1 5463 6154 0 1793 265 43 15 chr3 167811819 167812419 -59712159 - L1ME1 LINE L1 -59 6107 5491 25 65 0 0 chr3 167812486 167812532 -59712046 + AT_rich Low_complexity Low_complexity 1 46 0 2112 87 3 27 chr3 167812587 167812885 -59711693 - AluSg SINE Alu -19 291 1 26 30 0 0 chr3 167812885 167812918 -59711660 + AT_rich Low_complexity Low_complexity 1 33 0 22 80 0 0 chr3 167813352 167813402 -59711176 + AT_rich Low_complexity Low_complexity 1 50 0 1695 238 77 10 chr3 167813737 167814419 -59710159 + L1 LINE L1 1577 2324 -4713 885 211 33 14 chr3 167814418 167814631 -59709947 + L1 LINE L1 2645 2861 -4246 * 509 146 0 31 chr3 167814628 167814724 -59709854 + L1 LINE L1 5145 5237 -1869 * 921 246 42 53 chr3 167814727 167814836 -59709742 + AluJo SINE Alu 1 110 -202 261 0 0 0 chr3 167814836 167814865 -59709713 + (CA)n Simple_repeat Simple_repeat 2 30 0 921 246 42 53 chr3 167814865 167815040 -59709538 + AluJo SINE Alu 110 282 -30 198 103 0 0 chr3 167815040 167815069 -59709509 + (TC)n Simple_repeat Simple_repeat 2 30 0 2164 226 42 11 chr3 167815077 167815644 -59708934 + L1 LINE L1 5227 5811 -1295 695 149 0 0 chr3 167815655 167815762 -59708816 + U6 snRNA snRNA 1 107 0 8881 250 33 17 chr3 167815769 167819118 -59705460 + L1PA12 LINE L1 2386 5807 -1777 1525 103 5 5 chr3 167819120 167819334 -59705244 + THE1-int LTR MaLR 741 954 -626 943 272 28 3 chr3 167819389 167819676 -59704902 - L1MC4 LINE L1 -972 7070 6777 832 170 64 6 chr3 167819679 167819850 -59704728 + L1MB2 LINE L1 5961 6141 -30 728 296 111 6 chr3 167819938 167820289 -59704289 - L1MC4 LINE L1 -1255 6787 6400 181 234 75 101 chr3 167821470 167821658 -59702920 + L2 LINE L2 2325 2507 -807 310 387 66 25 chr3 167822572 167822846 -59701732 + L1ME LINE L1 5525 5809 -361 1828 172 60 34 chr3 167823106 167823646 -59700932 - MLT2A2 LTR ERVL 0 554 1 21 0 0 0 chr3 167824042 167824063 -59700515 + AT_rich Low_complexity Low_complexity 1 21 0 514 341 80 4 chr3 167824343 167824569 -59700009 + MIR SINE MIR 20 262 0 380 319 94 72 chr3 167824577 167825248 -59699330 + L2 LINE L2 1630 2315 -999 193 315 22 43 chr3 167826668 167826760 -59697818 - L3 LINE CR1 -1063 514 425 * 200 297 95 54 chr3 167826703 167826851 -59697727 + MER5A DNA MER1_type 36 189 0 8556 173 33 11 chr3 167827164 167829331 -59695247 + L1MCa LINE L1 18 2320 -4106 1342 201 22 11 chr3 167829332 167829600 -59694978 + AluJb SINE Alu 15 285 -27 297 0 0 0 chr3 167829600 167829633 -59694945 + (CA)n Simple_repeat Simple_repeat 2 34 0 5741 234 23 22 chr3 167829635 167831176 -59693402 + L1MCa LINE L1 2323 3866 -2560 1315 160 137 4 chr3 167831176 167831432 -59693146 + AluSx SINE Alu 1 290 -12 5741 234 23 22 chr3 167831432 167831817 -59692761 + L1MCa LINE L1 3866 4249 -2177 31 26 0 0 chr3 167831821 167831859 -59692719 + AT_rich Low_complexity Low_complexity 1 38 0 5102 131 10 6 chr3 167832611 167833480 -59691098 + L1PA16 LINE L1 5254 6161 -5 228 293 0 0 chr3 167833483 167833541 -59691037 + MARNA DNA Mariner 168 225 -361 22 35 0 0 chr3 167833760 167833789 -59690789 + AT_rich Low_complexity Low_complexity 1 29 0 1021 163 18 0 chr3 167834159 167834325 -59690253 + AluJb SINE Alu 134 302 -10 524 221 41 12 chr3 167834603 167834775 -59689803 - LTR37B LTR ERV1 -62 406 230 607 292 7 0 chr3 167834849 167835003 -59689575 - MER5B DNA MER1_type -23 155 1 414 295 161 0 chr3 167835064 167835213 -59689365 + MER5A DNA MER1_type 9 181 -8 341 244 13 0 chr3 167835213 167835291 -59689287 - LTR37B LTR ERV1 -384 84 6 359 308 7 63 chr3 167836126 167836269 -59688309 - L2 LINE L2 0 3272 3138 21 36 0 0 chr3 167836296 167836324 -59688254 + AT_rich Low_complexity Low_complexity 1 28 0 1006 158 8 77 chr3 167836760 167836994 -59687584 - MER20 DNA MER1_type -1 218 1 2201 77 17 20 chr3 167837743 167838043 -59686535 + AluY SINE Alu 1 299 -12 1368 243 126 25 chr3 167838165 167838729 -59685849 + L1ME2 LINE L1 5542 6162 -2 952 303 230 6 chr3 167838830 167839296 -59685282 + L2 LINE L2 2067 2636 -678 1050 148 87 25 chr3 167839296 167839649 -59684929 - MSTA LTR MaLR 0 426 18 975 285 53 16 chr3 167839658 167840112 -59684466 + L2 LINE L2 2631 3097 -216 3165 72 28 7 chr3 167841555 167841947 -59682631 + MLT2A1 LTR ERVL 1 404 -40 313 57 19 19 chr3 167841947 167842000 -59682578 + (TA)n Simple_repeat Simple_repeat 2 54 0 3165 72 28 7 chr3 167842000 167842035 -59682543 + MLT2A1 LTR ERVL 404 437 -7 302 342 83 60 chr3 167842099 167842400 -59682178 + L2 LINE L2 2581 2888 -426 850 311 48 22 chr3 167842865 167843262 -59681316 + L2 LINE L2 2633 3036 -236 442 301 0 71 chr3 167843249 167843432 -59681146 + L2 LINE L2 3143 3312 -1 * 208 175 25 0 chr3 167843499 167843539 -59681039 + (TATATG)n Simple_repeat Simple_repeat 4 44 0 246 95 0 0 chr3 167843599 167843641 -59680937 + (TTAA)n Simple_repeat Simple_repeat 3 44 0 26 107 0 0 chr3 167844647 167844750 -59679828 + AT_rich Low_complexity Low_complexity 1 103 0 209 287 11 11 chr3 167844897 167844991 -59679587 + (TA)n Simple_repeat Simple_repeat 1 94 0 252 230 212 0 chr3 167845625 167845738 -59678840 - MIR SINE MIR -6 256 120 327 261 72 59 chr3 167845945 167846098 -59678480 - L1ME4a LINE L1 -3 6118 5964 267 234 36 45 chr3 167846311 167846422 -59678156 + L1M4 LINE L1 14 123 -6419 1165 262 46 10 chr3 167846637 167846939 -59677639 + LTR53 LTR ERVL 195 507 -12 240 224 41 51 chr3 167846968 167847066 -59677512 + L1M4 LINE L1 146 242 -6300 1482 185 26 100 chr3 167847396 167847817 -59676761 + MLT1B LTR MaLR 1 390 0 2590 278 62 32 chr3 167847820 167849690 -59674888 + L1M4 LINE L1 1031 3073 -3571 353 363 86 26 chr3 167849790 167850242 -59674336 + L2 LINE L2 2478 2956 -358 268 325 16 32 chr3 167852782 167852908 -59671670 + L1PBb LINE L1 768 891 -5959 2256 94 105 3 chr3 167852952 167853294 -59671284 + MER51B LTR ERV1 1 377 0 8947 135 31 11 chr3 167853294 167853893 -59670685 + MER51B-int LTR ERV1 1 587 -7229 6231 56 1 4 chr3 167853893 167854675 -59669903 + LTR17 LTR ERV1 1 780 0 8947 135 31 11 chr3 167854675 167855546 -59669032 + MER51B-int LTR ERV1 587 1500 -6316 273 188 0 0 chr3 167855557 167855605 -59668973 + MER4A LTR ERV1 51 98 -566 744 152 26 66 chr3 167855610 167855802 -59668776 + MER4A LTR ERV1 276 518 -146 8524 101 50 6 chr3 167855803 167857215 -59667363 + MER51B-int LTR ERV1 1791 3265 -4551 1843 161 163 35 chr3 167857225 167857619 -59666959 + MER61-int LTR ERV1 1902 2244 -3702 20222 63 5 1 chr3 167857619 167861098 -59663480 + L1PA6 LINE L1 2697 6152 -2 1843 161 163 35 chr3 167861098 167861148 -59663430 + MER61-int LTR ERV1 2244 3172 -2774 1663 128 5 4 chr3 167861163 167861532 -59663046 + MER61-int LTR ERV1 2217 2643 -2574 * 10964 124 49 9 chr3 167861513 167863201 -59661377 + MER61-int LTR ERV1 5392 7146 -391 568 225 29 7 chr3 167863207 167863345 -59661233 + LTR54B LTR ERV1 1 141 -357 954 97 0 0 chr3 167863345 167863479 -59661099 + MER51-int LTR ERV1 7470 7603 -213 10484 229 39 17 chr3 167863479 167863826 -59660752 + L1PBb LINE L1 1796 2134 -4715 7014 58 16 0 chr3 167863826 167865065 -59659513 - L1PA6 LINE L1 0 6154 4909 10484 229 39 17 chr3 167865065 167865884 -59658694 + L1PBb LINE L1 2134 2934 -3915 1450 179 90 4 chr3 167865884 167866163 -59658415 + AluJb SINE Alu 1 303 -9 10484 229 39 17 chr3 167866163 167866175 -59658403 + L1PBb LINE L1 2934 2944 -3905 180 0 0 0 chr3 167866175 167866195 -59658383 + (CA)n Simple_repeat Simple_repeat 2 21 0 10484 229 39 17 chr3 167866195 167868855 -59655723 + L1PBb LINE L1 2944 5892 -957 322 261 0 0 chr3 167868860 167868925 -59655653 + AluJ/FLAM SINE Alu 3 67 -235 24 0 0 0 chr3 167869090 167869114 -59655464 + AT_rich Low_complexity Low_complexity 1 24 0 9060 96 11 1 chr3 167869114 167871209 -59653369 - L1PA8 LINE L1 -3 6169 4058 1282 153 0 0 chr3 167871415 167871630 -59652948 + L1PA16 LINE L1 5950 6164 -2 1874 254 37 13 chr3 167872295 167872755 -59651823 + MLT1A2-int LTR MaLR 1252 1722 -13 1279 227 92 12 chr3 167872778 167873104 -59651474 + MLT1A2 LTR MaLR 12 363 -11 27 0 0 0 chr3 167873334 167873361 -59651217 + AT_rich Low_complexity Low_complexity 1 27 0 487 252 178 0 chr3 167873447 167873582 -59650996 + MER5A DNA MER1_type 31 189 0 2796 6 0 3 chr3 167875175 167875486 -59649092 - AluYb8 SINE Alu -8 310 1 301 233 97 51 chr3 167876107 167876283 -59648295 - L1ME4a LINE L1 -176 5945 5762 21 71 0 0 chr3 167876485 167876527 -59648051 + AT_rich Low_complexity Low_complexity 1 42 0 328 333 33 24 chr3 167877638 167877776 -59646802 + MIR3 SINE MIR 46 185 -23 1512 203 42 126 chr3 167878019 167878565 -59646013 + MER70B LTR ERVL 4 503 -75 376 333 101 38 chr3 167878535 167878880 -59645698 + MLT1J LTR MaLR 53 419 -92 * 23 54 0 0 chr3 167879660 167879697 -59644881 + AT_rich Low_complexity Low_complexity 1 37 0 341 293 104 28 chr3 167879964 167880357 -59644221 + L1ME4a LINE L1 5530 5952 -169 183 80 0 0 chr3 167880610 167880635 -59643943 + (TTTTTA)n Simple_repeat Simple_repeat 4 28 0 1093 193 10 0 chr3 167881105 167881307 -59643271 + MER3 DNA MER1_type 1 204 -5 29 47 0 0 chr3 167881755 167881798 -59642780 + AT_rich Low_complexity Low_complexity 1 43 0 339 231 30 71 chr3 167881938 167882107 -59642471 - L1ME4a LINE L1 -265 5856 5695 1170 164 41 5 chr3 167882429 167882649 -59641929 - L1PA15 LINE L1 0 6165 5938 417 283 73 39 chr3 167885810 167886015 -59638563 - MIR SINE MIR -21 241 30 209 139 23 0 chr3 167886708 167886751 -59637827 + (TG)n Simple_repeat Simple_repeat 2 45 0 * 317 72 84 0 chr3 167886750 167886833 -59637745 + (TA)n Simple_repeat Simple_repeat 1 90 0 209 179 0 0 chr3 167886833 167886872 -59637706 + (CA)n Simple_repeat Simple_repeat 2 40 0 1254 198 45 49 chr3 167886920 167887208 -59637370 + AluJo SINE Alu 1 287 -25 275 87 58 0 chr3 167887359 167887428 -59637150 + (TA)n Simple_repeat Simple_repeat 1 73 0 263 150 33 0 chr3 167887462 167887522 -59637056 + (TA)n Simple_repeat Simple_repeat 2 63 0 557 63 57 57 chr3 167887522 167887697 -59636881 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 238 130 22 0 chr3 167887700 167887746 -59636832 + (TA)n Simple_repeat Simple_repeat 1 47 0 317 271 148 49 chr3 167887919 167888041 -59636537 - L2 LINE L2 -1 3312 3179 1163 163 66 0 chr3 167888105 167888363 -59636215 + L1MA7 LINE L1 6017 6291 0 286 298 39 61 chr3 167888659 167888840 -59635738 - L2 LINE L2 -316 2997 2821 5045 29 0 0 chr3 167889090 167889687 -59634891 - L1PA3 LINE L1 -1766 4380 3784 * 8349 23 9 5 chr3 167889685 167891395 -59633183 + L1PA3 LINE L1 4366 6084 -71 1836 240 20 23 chr3 167893300 167893862 -59630716 - L1M4 LINE L1 -2171 4473 3914 928 287 31 6 chr3 167893879 167894238 -59630340 - L1M4 LINE L1 -2932 3712 3345 * 1296 251 54 0 chr3 167894220 167894535 -59630043 + L1M4 LINE L1 573 904 -5638 6338 163 147 35 chr3 167894535 167896060 -59628518 + pTR5 LTR ERV1 743 2438 0 1704 193 78 13 chr3 167896099 167896561 -59628017 + L1M4 LINE L1 937 1428 -5114 1123 200 55 123 chr3 167896650 167897090 -59627488 - L1M4 LINE L1 -6117 425 16 507 252 43 52 chr3 167897212 167897422 -59627156 + MLT1K LTR MaLR 365 572 -16 192 326 192 12 chr3 167897546 167897874 -59626704 - L2 LINE L2 -1059 2255 1869 421 184 29 0 chr3 167899115 167899218 -59625360 + GA-rich Low_complexity Low_complexity 2 107 0 2285 171 26 23 chr3 167899757 167900185 -59624393 - MSTB1 LTR MaLR -3 429 1 462 33 0 0 chr3 167900370 167900431 -59624147 + AluY SINE Alu 1 61 -249 1911 172 0 34 chr3 167901084 167901433 -59623145 - MER1B DNA MER1_type 0 337 1 300 293 24 85 chr3 167902306 167902470 -59622108 + MLT1L LTR MaLR 1 154 -461 674 159 16 192 chr3 167902473 167902718 -59621860 - MER20 DNA MER1_type -2 217 16 365 327 153 14 chr3 167902812 167903035 -59621543 + MLT1L LTR MaLR 340 593 -22 9181 174 51 23 chr3 167903972 167905557 -59619021 - L1MA8 LINE L1 -7 6284 4745 180 0 0 0 chr3 167905557 167905577 -59619001 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 9181 174 51 23 chr3 167905577 167905605 -59618973 - L1MA8 LINE L1 -1546 4745 4719 2049 111 81 23 chr3 167905605 167905949 -59618629 + THE1B LTR MaLR 1 364 0 9181 174 51 23 chr3 167905949 167906202 -59618376 - L1MA8 LINE L1 -1572 4719 4475 1938 169 19 8 chr3 167906202 167906564 -59618014 - MER47A DNA MER2_type 0 366 1 9181 174 51 23 chr3 167906564 167907826 -59616752 - L1MA8 LINE L1 -1816 4475 3089 23 33 0 0 chr3 167907906 167907936 -59616642 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr3 167908950 167908975 -59615603 + AT_rich Low_complexity Low_complexity 1 25 0 344 224 204 0 chr3 167909162 167909309 -59615269 + L1ME LINE L1 5602 5778 -343 264 286 167 0 chr3 167909334 167909418 -59615160 + L2 LINE L2 3216 3313 0 21 36 0 0 chr3 167909774 167909802 -59614776 + AT_rich Low_complexity Low_complexity 1 28 0 7538 19 2 6 chr3 167909802 167910691 -59613887 - L1PA3 LINE L1 -1 6154 5269 5107 30 0 6 chr3 167910689 167911320 -59613258 + L1PA3 LINE L1 4674 5300 -846 * 837 181 6 6 chr3 167911740 167911900 -59612678 - MER6A DNA MER2_type 0 605 446 5506 134 0 0 chr3 167911981 167913258 -59611320 - L1PA14 LINE L1 -3 6158 4880 2406 171 20 20 chr3 167913259 167913699 -59610879 - MER6A DNA MER2_type -161 444 5 322 274 64 32 chr3 167913784 167913941 -59610637 - MER104 DNA Tc2 -4 176 15 278 358 9 0 chr3 167914102 167914211 -59610367 - MIR3 SINE MIR -9 199 90 1007 65 7 14 chr3 167914250 167914389 -59610189 + L1MA1 LINE L1 6165 6302 0 434 310 149 27 chr3 167915608 167915976 -59608602 - L1M4 LINE L1 -1169 4977 4565 244 354 10 10 chr3 167916511 167916607 -59607971 - L2 LINE L2 -21 3292 3197 414 39 0 0 chr3 167916683 167916735 -59607843 + (CA)n Simple_repeat Simple_repeat 2 53 0 1626 200 69 77 chr3 167916821 167917326 -59607252 + MLT1D LTR MaLR 5 505 0 182 320 0 0 chr3 167917697 167917747 -59606831 + L2 LINE L2 3183 3232 -81 330 316 71 60 chr3 167918109 167918277 -59606301 - MIR SINE MIR -59 203 34 424 279 23 52 chr3 167919328 167919500 -59605078 + MIR SINE MIR 63 229 -33 369 0 0 0 chr3 167919677 167919718 -59604860 + (TG)n Simple_repeat Simple_repeat 1 41 0 397 319 114 0 chr3 167920081 167920247 -59604331 - MIR SINE MIR -67 195 11 287 350 42 21 chr3 167920392 167920535 -59604043 + MIR SINE MIR 49 194 -68 184 229 0 0 chr3 167920537 167920572 -59604006 + L2 LINE L2 3261 3295 -18 28 0 0 0 chr3 167922133 167922161 -59602417 + AT_rich Low_complexity Low_complexity 1 28 0 403 258 74 78 chr3 167923620 167923837 -59600741 - L2 LINE L2 -8 3305 3090 2266 198 37 29 chr3 167923935 167924450 -59600128 + LTR53 LTR ERVL 1 519 0 464 195 0 87 chr3 167925240 167925389 -59599189 - L1MA4 LINE L1 -5 6295 6160 30563 70 10 3 chr3 167925680 167931755 -59592823 - L1PA5 LINE L1 -8 6146 11 22 0 0 0 chr3 167932464 167932486 -59592092 + AT_rich Low_complexity Low_complexity 1 22 0 1003 161 36 5 chr3 167932636 167932828 -59591750 - L1PA16 LINE L1 -9 6157 5960 281 219 134 12 chr3 167933074 167933156 -59591422 + MIR SINE MIR 16 107 -101 274 86 0 0 chr3 167933215 167933250 -59591328 + MADE1 DNA Mariner 1 35 -45 24 0 0 0 chr3 167933291 167933315 -59591263 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr3 167934023 167934059 -59590519 + AT_rich Low_complexity Low_complexity 1 36 0 1568 169 34 41 chr3 167934219 167934514 -59590064 - AluJo SINE Alu -18 294 2 2127 57 8 15 chr3 167934555 167934818 -59589760 + AluY SINE Alu 36 296 -15 2525 132 3 0 chr3 167935715 167936078 -59588500 - THE1B LTR MaLR 0 364 1 8698 106 49 101 chr3 167936078 167937745 -59586833 - THE1B-int LTR MaLR 0 1580 1 2428 114 34 0 chr3 167937745 167938096 -59586482 - THE1B LTR MaLR -1 363 1 1700 255 64 52 chr3 167938184 167938563 -59586015 + L1MC5 LINE L1 6626 6999 -962 2301 69 7 14 chr3 167938563 167938873 -59585705 - AluY SINE Alu 0 308 1 1700 255 64 52 chr3 167938873 167939312 -59585266 + L1MC5 LINE L1 6999 7390 -571 265 154 13 51 chr3 167939329 167939407 -59585171 + L1MC5 LINE L1 7453 7527 -434 390 265 61 31 chr3 167939481 167939677 -59584901 + L1ME3A LINE L1 5962 6163 -7 27 0 0 0 chr3 167939745 167939772 -59584806 + AT_rich Low_complexity Low_complexity 1 27 0 1638 137 132 41 chr3 167939821 167940163 -59584415 + THE1C LTR MaLR 3 375 0 198 0 0 0 chr3 167941143 167941165 -59583413 + (TG)n Simple_repeat Simple_repeat 2 23 0 1444 154 55 37 chr3 167941498 167941770 -59582808 - AluSq SINE Alu -7 306 30 557 346 106 18 chr3 167942083 167942525 -59582053 - L2 LINE L2 -540 2774 2294 459 100 0 0 chr3 167942572 167942642 -59581936 + (TA)n Simple_repeat Simple_repeat 2 71 0 221 342 125 56 chr3 167942728 167943207 -59581371 - L2 LINE L2 -1241 2073 1562 2250 103 3 0 chr3 167944216 167944516 -59580062 + AluSg SINE Alu 5 305 -5 2892 146 24 5 chr3 167944517 167944616 -59579962 + L1MA5 LINE L1 5605 5701 -599 237 65 0 0 chr3 167944616 167944647 -59579931 + (CA)n Simple_repeat Simple_repeat 2 32 0 2892 146 24 5 chr3 167944647 167945142 -59579436 + L1MA5 LINE L1 5701 6298 -2 279 331 63 24 chr3 167945291 167945418 -59579160 + L1ME LINE L1 328 459 -5937 2217 254 82 49 chr3 167946138 167947602 -59576976 + L1ME LINE L1 786 2312 -4094 219 69 0 0 chr3 167947602 167947631 -59576947 + (TAGA)n Simple_repeat Simple_repeat 3 31 0 2217 254 82 49 chr3 167947631 167948441 -59576137 + L1ME LINE L1 2312 3093 -3313 608 364 53 40 chr3 167948446 167949054 -59575524 + L1PA16 LINE L1 789 1404 -6170 294 275 44 0 chr3 167949153 167949244 -59575334 + L1PA16 LINE L1 2086 2180 -5401 5287 191 49 3 chr3 167949319 167951155 -59573423 + L1PA16 LINE L1 5675 7604 0 346 209 108 16 chr3 167951161 167951290 -59573288 + L1ME3A LINE L1 5747 5887 -283 598 231 4 136 chr3 167952195 167952438 -59572140 - MIR SINE MIR -40 222 12 2165 77 3 73 chr3 167952991 167953124 -59571454 + AluSc SINE Alu 1 142 -167 1979 120 7 0 chr3 167953124 167953408 -59571170 + AluSx SINE Alu 1 286 -26 2165 77 3 73 chr3 167953408 167953587 -59570991 + AluSc SINE Alu 142 291 -18 1445 125 43 0 chr3 167953747 167953955 -59570623 + AluSx SINE Alu 44 260 -52 214 244 0 0 chr3 167954644 167954685 -59569893 + polypurine Low_complexity Low_complexity 4 44 0 1062 115 25 0 chr3 167954790 167955035 -59569543 + (TAGA)n Simple_repeat Simple_repeat 1 251 0 234 340 100 20 chr3 167955063 167955213 -59569365 - MER5B DNA MER1_type -8 170 9 444 303 29 63 chr3 167955851 167956089 -59568489 + L1MEd LINE L1 130 359 -5760 822 207 96 29 chr3 167956339 167956547 -59568031 + MER58 DNA MER1_type 34 255 -86 3529 151 23 3 chr3 167956547 167957111 -59567467 - LTR26 LTR ERV1 0 603 29 308 149 15 60 chr3 167957414 167957481 -59567097 + L2 LINE L2 3209 3272 0 190 257 50 79 chr3 167958146 167958286 -59566292 + L2 LINE L2 2180 2315 -999 222 338 68 14 chr3 167958307 167958381 -59566197 + MIR SINE MIR 2 79 -183 1769 113 0 4 chr3 167958482 167958729 -59565849 + AluSq SINE Alu 63 308 -5 508 117 0 0 chr3 167959035 167959112 -59565466 - AluS SINE Alu -235 77 1 2237 88 10 10 chr3 167960104 167960412 -59564166 - AluY SINE Alu -3 308 1 2006 110 3 52 chr3 167960510 167960820 -59563758 - AluSq SINE Alu -18 295 1 2755 216 38 48 chr3 167963371 167964103 -59560475 - MER50 LTR ERV1 0 734 10 2977 98 2 16 chr3 167964707 167965146 -59559432 + L1PA11 LINE L1 5742 6174 0 1708 243 40 9 chr3 167965390 167965838 -59558740 - MLT1C LTR MaLR 0 467 6 560 349 105 31 chr3 167965841 167966477 -59558101 + L2 LINE L2 1952 2634 -680 4892 149 103 7 chr3 167966828 167967723 -59556855 - Tigger1 DNA MER2_type -1436 982 2 27 49 0 0 chr3 167967738 167967779 -59556799 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr3 167968024 167968056 -59556522 + AT_rich Low_complexity Low_complexity 1 32 0 455 101 20 30 chr3 167968275 167968374 -59556204 + (GAA)n Simple_repeat Simple_repeat 3 100 0 1803 178 23 0 chr3 167969461 167969764 -59554814 + AluJo SINE Alu 1 310 -2 387 0 0 0 chr3 167969938 167969981 -59554597 + (CA)n Simple_repeat Simple_repeat 2 44 0 512 135 0 0 chr3 167970009 167970083 -59554495 - THE1-int LTR MaLR -922 658 585 684 158 0 26 chr3 167970083 167970197 -59554381 - FLAM_C SINE Alu -19 124 14 25 102 0 0 chr3 167970551 167970639 -59553939 + AT_rich Low_complexity Low_complexity 1 88 0 27 0 0 0 chr3 167972583 167972610 -59551968 + AT_rich Low_complexity Low_complexity 1 27 0 273 29 0 0 chr3 167974614 167974648 -59549930 + (CA)n Simple_repeat Simple_repeat 1 34 0 242 296 11 45 chr3 167975026 167975114 -59549464 - MIR3 SINE MIR -9 199 115 2466 108 0 6 chr3 167975185 167975546 -59549032 - L1PB1 LINE L1 -1 6150 5792 521 194 0 0 chr3 167975687 167975790 -59548788 + L1PBa LINE L1 95 197 -6666 * 2193 142 0 14 chr3 167975787 167976140 -59548438 + L1PBa LINE L1 1392 1739 -5124 2315 88 3 0 chr3 167976140 167976435 -59548143 + AluY SINE Alu 1 296 -15 4201 66 28 0 chr3 167976435 167977008 -59547570 + L1PBa LINE L1 2098 2686 -4177 400 328 81 0 chr3 167977533 167977707 -59546871 + MIR SINE MIR 48 235 -27 287 298 21 11 chr3 167978477 167978571 -59546007 - MLT1I LTR MaLR -157 252 158 30 59 0 0 chr3 167978763 167978814 -59545764 + AT_rich Low_complexity Low_complexity 1 51 0 503 259 0 0 chr3 167983598 167983706 -59540872 - MARNA DNA Mariner -342 244 137 456 313 60 0 chr3 167984589 167984723 -59539855 - MIR3 SINE MIR -18 190 49 265 324 14 0 chr3 167984956 167985030 -59539548 + MER91A DNA MER1_type 17 91 -105 1227 233 29 88 chr3 167985032 167985452 -59539126 + MLT2D LTR ERVL 1 395 -19 220 303 15 30 chr3 167985524 167985590 -59538988 + MER91A DNA MER1_type 126 190 0 2387 94 0 0 chr3 167986261 167986569 -59538009 - AluSx SINE Alu -4 308 1 1208 61 0 18 chr3 167986573 167986737 -59537841 - L1PA8 LINE L1 -7 6165 6005 455 53 0 0 chr3 167986797 167986854 -59537724 - L1PA8 LINE L1 -111 6061 6005 293 330 37 0 chr3 167988282 167988391 -59536187 - L2 LINE L2 0 3313 3201 4647 211 30 18 chr3 167989561 167991436 -59533142 - L1MB2 LINE L1 0 6235 4268 1037 279 24 11 chr3 167991439 167991808 -59532770 - L1MB2 LINE L1 -4853 1288 915 509 331 36 62 chr3 167992285 167992641 -59531937 - L1MB2 LINE L1 -5543 588 242 30 0 0 0 chr3 167992831 167992861 -59531717 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr3 167993194 167993230 -59531348 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 167994081 167994102 -59530476 + AT_rich Low_complexity Low_complexity 1 21 0 776 238 32 27 chr3 167995944 167996129 -59528449 - MER5A DNA MER1_type 0 189 4 22 0 0 0 chr3 167997668 167997690 -59526888 + AT_rich Low_complexity Low_complexity 1 22 0 222 383 84 0 chr3 167998866 167998973 -59525605 + L2 LINE L2 3149 3264 -8 2306 91 0 7 chr3 168000796 168001104 -59523474 - AluSx SINE Alu -6 306 1 193 269 39 0 chr3 168001322 168001374 -59523204 + L2 LINE L2 2992 3045 -227 1029 194 9 9 chr3 168001699 168001910 -59522668 - L1PA16 LINE L1 -10 6156 5946 21 36 0 0 chr3 168002487 168002515 -59522063 + AT_rich Low_complexity Low_complexity 1 28 0 372 22 0 0 chr3 168003021 168003066 -59521512 + (CA)n Simple_repeat Simple_repeat 2 46 0 3242 113 17 2 chr3 168004350 168004829 -59519749 - LTR15 LTR ERV1 -7 486 1 867 243 0 5 chr3 168004853 168005038 -59519540 + LTR41 LTR ERVL 1 184 -589 272 281 73 10 chr3 168005226 168005322 -59519256 + LTR41 LTR ERVL 492 593 -180 15041 155 13 9 chr3 168005589 168009082 -59515496 - L1PA10 LINE L1 -5 6163 2665 287 333 43 8 chr3 168009920 168010037 -59514541 + MIR SINE MIR 128 248 -14 485 324 74 56 chr3 168011221 168011545 -59513033 + MER102b DNA MER1_type 12 341 0 520 278 61 34 chr3 168012591 168012918 -59511660 + L1ME4a LINE L1 5548 5883 -238 2765 168 68 48 chr3 168013187 168013873 -59510705 + L1MA9 LINE L1 5551 6250 -62 51 31 0 0 chr3 168013902 168013967 -59510611 + AT_rich Low_complexity Low_complexity 1 65 0 4912 96 31 1 chr3 168014222 168014940 -59509638 - L1PA13 LINE L1 -2 6161 5423 428 232 42 54 chr3 168015744 168015912 -59508666 + L1MC5 LINE L1 7763 7928 -33 267 293 13 13 chr3 168016524 168016599 -59507979 - MER94 DNA DNA -15 119 45 830 175 33 16 chr3 168016745 168016928 -59507650 + MER53 DNA DNA 4 189 0 4531 232 36 106 chr3 168017548 168018356 -59506222 - L1MD2 LINE L1 -340 6019 5156 1651 151 92 0 chr3 168018356 168018513 -59506065 - AluSx SINE Alu -2 310 169 444 19 0 0 chr3 168018513 168018566 -59506012 + (TG)n Simple_repeat Simple_repeat 2 54 0 1651 151 92 0 chr3 168018566 168018692 -59505886 - AluSx SINE Alu -143 169 1 4531 232 36 106 chr3 168018692 168019174 -59505404 - L1MD2 LINE L1 -1203 5156 4642 1780 188 0 3 chr3 168019174 168019477 -59505101 + AluJb SINE Alu 1 302 -10 4531 232 36 106 chr3 168019477 168020213 -59504365 - L1MD2 LINE L1 -1717 4642 3856 2080 113 0 0 chr3 168020213 168020522 -59504056 - AluY SINE Alu 0 309 1 351 0 0 0 chr3 168020522 168020561 -59504017 + (TTA)n Simple_repeat Simple_repeat 3 41 0 6630 66 6 1 chr3 168020561 168021973 -59502605 - L1PA6 LINE L1 -18 6136 4722 2073 107 0 14 chr3 168021974 168022264 -59502314 - AluSq SINE Alu -27 286 1 4531 232 36 106 chr3 168022264 168023038 -59501540 - L1MD2 LINE L1 -2500 3859 3259 1152 240 75 45 chr3 168023022 168023463 -59501115 - L1MD2 LINE L1 -3240 2906 2453 * 5257 146 18 5 chr3 168023474 168024364 -59500214 + L1PB4 LINE L1 5254 6155 -1 522 279 46 5 chr3 168024373 168024592 -59499986 - L1MD2 LINE L1 -3673 2473 2246 329 276 10 0 chr3 168024598 168024696 -59499882 + L1MDa LINE L1 1019 1117 -5423 * 394 258 68 8 chr3 168024685 168024817 -59499761 + L1MA3 LINE L1 6166 6305 0 2185 116 3 0 chr3 168024919 168025220 -59499358 + AluSx SINE Alu 1 302 -10 208 147 0 0 chr3 168026872 168026906 -59497672 + (TA)n Simple_repeat Simple_repeat 1 34 0 371 75 19 0 chr3 168027555 168027608 -59496970 - L1PA8 LINE L1 -14 6158 6105 205 216 0 0 chr3 168027708 168027745 -59496833 + L2 LINE L2 3259 3295 -18 21 0 0 0 chr3 168028708 168028729 -59495849 + AT_rich Low_complexity Low_complexity 1 21 0 369 0 0 0 chr3 168029139 168029180 -59495398 + (TTTTA)n Simple_repeat Simple_repeat 5 45 0 33 66 0 0 chr3 168034173 168034234 -59490344 + AT_rich Low_complexity Low_complexity 1 61 0 437 326 47 47 chr3 168035654 168035890 -59488688 - MIR SINE MIR -24 238 3 1272 113 57 0 chr3 168036059 168036253 -59488325 - LTR12 LTR ERV1 -133 581 377 250 245 31 20 chr3 168036254 168036352 -59488226 - LTR30 LTR ERV1 -80 642 544 3330 145 87 59 chr3 168036352 168037270 -59487308 - pTR5 LTR ERV1 -413 2025 743 276 233 151 0 chr3 168038886 168038959 -59485619 + MER5A DNA MER1_type 28 111 -78 2765 7 0 0 chr3 168040227 168040530 -59484048 + AluYb8 SINE Alu 3 305 -13 792 259 16 75 chr3 168040735 168040861 -59483717 - MIR SINE MIR -1 261 156 2375 45 41 0 chr3 168040861 168041151 -59483427 - AluY SINE Alu -9 302 1 792 259 16 75 chr3 168041151 168041279 -59483299 - MIR SINE MIR -106 156 22 22 0 0 0 chr3 168042145 168042167 -59482411 + AT_rich Low_complexity Low_complexity 1 22 0 250 357 56 14 chr3 168042322 168042465 -59482113 - MER5A DNA MER1_type -1 188 40 * 260 371 56 14 chr3 168042347 168042490 -59482088 + MER5A DNA MER1_type 38 186 -3 2518 68 11 25 chr3 168042616 168042971 -59481607 + L1PB1 LINE L1 5801 6150 -1 40 73 0 0 chr3 168043152 168043234 -59481344 + AT_rich Low_complexity Low_complexity 1 82 0 450 94 0 0 chr3 168045046 168045110 -59479468 + (TA)n Simple_repeat Simple_repeat 2 65 0 21 0 0 0 chr3 168046433 168046454 -59478124 + AT_rich Low_complexity Low_complexity 1 21 0 219 36 0 0 chr3 168047909 168047937 -59476641 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 21 36 0 0 chr3 168050886 168050914 -59473664 + AT_rich Low_complexity Low_complexity 1 28 0 2212 90 7 3 chr3 168051124 168051423 -59473155 + AluSq SINE Alu 14 313 0 215 116 47 0 chr3 168051423 168051466 -59473112 + GA-rich Low_complexity Low_complexity 4 48 0 931 0 26 0 chr3 168052215 168052329 -59472249 + (TAGA)n Simple_repeat Simple_repeat 2 118 0 360 273 41 58 chr3 168052476 168052597 -59471981 + L2 LINE L2 3183 3301 -12 375 352 0 0 chr3 168053254 168053379 -59471199 - MIR3 SINE MIR -9 199 75 389 203 144 78 chr3 168053604 168053757 -59470821 - L1PA13 LINE L1 -10 6153 5991 24 0 0 0 chr3 168053773 168053797 -59470781 + AT_rich Low_complexity Low_complexity 1 24 0 463 342 137 25 chr3 168054841 168055344 -59469234 - L2 LINE L2 -4 3309 2741 21 0 0 0 chr3 168055741 168055762 -59468816 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 168056560 168056590 -59467988 + AT_rich Low_complexity Low_complexity 1 30 0 22 56 0 0 chr3 168058637 168058673 -59465905 + AT_rich Low_complexity Low_complexity 1 36 0 469 204 0 39 chr3 168059087 168059190 -59465388 - 7SK RNA RNA -90 103 5 21 0 0 0 chr3 168059356 168059377 -59465201 + AT_rich Low_complexity Low_complexity 1 21 0 399 223 170 0 chr3 168060579 168060691 -59463887 + MIR SINE MIR 81 211 -51 194 273 55 0 chr3 168060966 168061021 -59463557 + MIR SINE MIR 92 149 -113 953 199 0 75 chr3 168061737 168061963 -59462615 + AluJo SINE Alu 85 293 -19 28 29 0 0 chr3 168061996 168062031 -59462547 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr3 168062717 168062748 -59461830 + AT_rich Low_complexity Low_complexity 1 31 0 254 211 0 35 chr3 168063268 168063325 -59461253 - Charlie8 DNA MER1_type -990 1427 1373 369 0 0 0 chr3 168063389 168063430 -59461148 + (TA)n Simple_repeat Simple_repeat 1 41 0 381 231 60 22 chr3 168064266 168064400 -59460178 - L1ME1 LINE L1 -18 6148 6010 23 0 0 0 chr3 168064683 168064706 -59459872 + AT_rich Low_complexity Low_complexity 1 23 0 306 219 102 39 chr3 168064711 168064839 -59459739 - L1ME4a LINE L1 -4 6117 5982 277 215 0 15 chr3 168064862 168064927 -59459651 - L1ME4a LINE L1 -93 6028 5965 22 70 0 0 chr3 168066369 168066412 -59458166 + AT_rich Low_complexity Low_complexity 1 43 0 14667 176 39 14 chr3 168066452 168070775 -59453803 + L1MA1 LINE L1 11 6253 -1312 6825 112 16 5 chr3 168070775 168071895 -59452683 + L1MA1 LINE L1 6583 7716 -5 41 36 0 0 chr3 168071898 168071953 -59452625 + AT_rich Low_complexity Low_complexity 1 55 0 725 319 81 26 chr3 168072147 168072913 -59451665 + L1ME2 LINE L1 4038 4845 -1301 8234 124 8 8 chr3 168072986 168074301 -59450277 + L1P LINE L1 1871 3185 -2961 21 0 0 0 chr3 168074939 168074960 -59449618 + AT_rich Low_complexity Low_complexity 1 21 0 388 255 47 20 chr3 168074965 168075114 -59449464 + L1ME2 LINE L1 5729 5881 -283 * 488 301 73 18 chr3 168075113 168075399 -59449179 + L1ME4a LINE L1 5521 5822 -299 2023 139 50 16 chr3 168075694 168076074 -59448504 + L1MA4A LINE L1 5910 6302 -1 23 0 0 0 chr3 168076221 168076244 -59448334 + AT_rich Low_complexity Low_complexity 1 23 0 897 258 55 56 chr3 168076593 168077065 -59447513 + MLT1C LTR MaLR 17 496 -9 301 43 0 64 chr3 168077668 168077715 -59446863 + L1PA8 LINE L1 6123 6166 -6 24 53 0 0 chr3 168077901 168077939 -59446639 + AT_rich Low_complexity Low_complexity 1 38 0 473 231 22 0 chr3 168078445 168078579 -59445999 + GA-rich Low_complexity Low_complexity 3 139 0 290 329 127 13 chr3 168078627 168078864 -59445714 + L2 LINE L2 1769 2032 -1282 316 233 128 35 chr3 168078881 168079053 -59445525 + L1ME4a LINE L1 5810 5997 -124 1151 221 41 172 chr3 168079234 168079845 -59444733 + L1ME3A LINE L1 5627 6157 -13 243 261 62 0 chr3 168080309 168080374 -59444204 + MIR SINE MIR 71 139 -69 465 226 10 49 chr3 168081256 168081358 -59443220 + L2 LINE L2 3200 3297 -16 234 0 0 0 chr3 168081361 168081387 -59443191 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 272 337 10 66 chr3 168081574 168081770 -59442808 - L3 LINE CR1 -476 1101 917 23 0 0 0 chr3 168081886 168081909 -59442669 + AT_rich Low_complexity Low_complexity 1 23 0 204 40 0 0 chr3 168082531 168082556 -59442022 + (CA)n Simple_repeat Simple_repeat 1 25 0 222 263 200 11 chr3 168082906 168083001 -59441577 - L2 LINE L2 -6 3307 3195 472 211 8 8 chr3 168083017 168083150 -59441428 + CT-rich Low_complexity Low_complexity 3 135 0 1450 130 28 36 chr3 168083227 168083474 -59441104 - THE1B LTR MaLR -119 245 1 11887 85 5 0 chr3 168083474 168085047 -59439531 - THE1B-int LTR MaLR 0 1580 1 2372 113 22 17 chr3 168085047 168085409 -59439169 - THE1B LTR MaLR 0 364 1 23 0 0 0 chr3 168087099 168087122 -59437456 + AT_rich Low_complexity Low_complexity 1 23 0 831 296 45 21 chr3 168090036 168090415 -59434163 + HAL1 LINE L1 1402 1789 -718 315 238 33 33 chr3 168090470 168090621 -59433957 + HAL1 LINE L1 2012 2162 -345 31 0 0 0 chr3 168091817 168091848 -59432730 + AT_rich Low_complexity Low_complexity 1 31 0 24 0 0 0 chr3 168093767 168093791 -59430787 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr3 168095093 168095128 -59429450 + AT_rich Low_complexity Low_complexity 1 35 0 23 97 0 0 chr3 168095704 168095776 -59428802 + AT_rich Low_complexity Low_complexity 1 72 0 36 40 0 0 chr3 168095811 168095861 -59428717 + AT_rich Low_complexity Low_complexity 1 50 0 1650 134 19 0 chr3 168097160 168097422 -59427156 + L1PA16 LINE L1 5891 6157 -9 264 289 195 8 chr3 168098056 168098184 -59426394 - MIR SINE MIR -66 196 45 21 36 0 0 chr3 168098309 168098337 -59426241 + AT_rich Low_complexity Low_complexity 1 28 0 313 305 39 13 chr3 168098583 168098737 -59425841 - L2 LINE L2 -366 2948 2791 1197 166 90 62 chr3 168099398 168099687 -59424891 + AluSx SINE Alu 1 297 -5 599 200 18 82 chr3 168100735 168100905 -59423673 - MIR SINE MIR 0 262 104 2359 77 0 6 chr3 168101547 168101858 -59422720 + AluY SINE Alu 1 309 -2 270 274 42 0 chr3 168101858 168101953 -59422625 + Charlie8 DNA MER1_type 100 198 -2219 2096 74 0 11 chr3 168102480 168102811 -59421767 + AluSg SINE Alu 1 328 0 254 341 101 22 chr3 168104101 168104239 -59420339 + MIR SINE MIR 6 154 -108 206 219 27 14 chr3 168104849 168104922 -59419656 + (TA)n Simple_repeat Simple_repeat 2 75 0 5992 70 1 0 chr3 168105284 168106057 -59418521 - L1PA7 LINE L1 0 6154 5381 1167 57 0 0 chr3 168106058 168106216 -59418362 + L1PA7 LINE L1 5224 5381 -765 243 211 53 0 chr3 168106243 168106338 -59418240 + (TA)n Simple_repeat Simple_repeat 1 100 0 21 57 0 0 chr3 168106497 168106532 -59418046 + AT_rich Low_complexity Low_complexity 1 35 0 1408 204 3 48 chr3 168107387 168107696 -59416882 + AluJb SINE Alu 1 295 -17 777 264 117 9 chr3 168107719 168107950 -59416628 - MIR SINE MIR -5 257 2 29 60 0 0 chr3 168108637 168108687 -59415891 + AT_rich Low_complexity Low_complexity 1 50 0 18774 93 15 4 chr3 168113087 168115704 -59408874 - L1P LINE L1 -3500 2646 1 2624 119 48 88 chr3 168115715 168116189 -59408389 + HSMAR2 DNA Mariner 787 1239 -63 1787 157 20 3 chr3 168116189 168116494 -59408084 - AluSx SINE Alu 0 312 3 2624 119 48 88 chr3 168116494 168116555 -59408023 + HSMAR2 DNA Mariner 1239 1301 -1 1851 149 3 7 chr3 168116555 168116851 -59407727 - AluSp SINE Alu -18 295 1 309 309 50 22 chr3 168117109 168117248 -59407330 - L2 LINE L2 0 3313 3171 187 261 43 0 chr3 168117395 168117441 -59407137 - L2 LINE L2 -231 3041 2994 1553 204 3 20 chr3 168117454 168117758 -59406820 + AluJo SINE Alu 2 300 -12 2089 118 7 0 chr3 168117793 168118082 -59406496 + AluSq SINE Alu 1 291 -22 680 230 0 0 chr3 168118130 168118256 -59406322 + FLAM_A SINE Alu 1 126 -7 543 304 70 0 chr3 168118438 168118609 -59405969 + MER102a DNA MER1_type 145 327 -3 4612 22 4 0 chr3 168118867 168119403 -59405175 - L1PA3 LINE L1 -3 6152 5615 2102 138 0 0 chr3 168119462 168119760 -59404818 - AluSq SINE Alu -15 298 1 246 68 34 51 chr3 168122090 168122149 -59402429 + (GAAA)n Simple_repeat Simple_repeat 2 59 0 684 344 131 32 chr3 168122171 168123055 -59401523 - L2 LINE L2 -1 3271 2301 201 178 0 0 chr3 168123077 168123122 -59401456 + (TG)n Simple_repeat Simple_repeat 1 45 0 471 292 43 24 chr3 168123592 168123801 -59400777 - MLT1J LTR MaLR -23 488 276 2173 204 93 41 chr3 168123960 168124727 -59399851 - MER63C DNA MER1_type -47 883 1 182 310 35 46 chr3 168124727 168124814 -59399764 + MER5A DNA MER1_type 47 132 -57 21 0 0 0 chr3 168126272 168126293 -59398285 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 168126505 168126528 -59398050 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr3 168126840 168126866 -59397712 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 168126958 168126979 -59397599 + AT_rich Low_complexity Low_complexity 1 21 0 180 152 0 0 chr3 168129953 168129986 -59394592 + GA-rich Low_complexity Low_complexity 2 34 0 2106 121 7 16 chr3 168131342 168131648 -59392930 + AluSx SINE Alu 1 303 -9 360 263 22 89 chr3 168131693 168131872 -59392706 - MIR SINE MIR -22 240 74 25 0 0 0 chr3 168133373 168133398 -59391180 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr3 168134564 168134592 -59389986 + AT_rich Low_complexity Low_complexity 1 28 0 648 215 0 8 chr3 168134867 168134997 -59389581 + FLAM_A SINE Alu 1 129 -4 23 0 0 0 chr3 168136178 168136201 -59388377 + AT_rich Low_complexity Low_complexity 1 23 0 356 344 16 65 chr3 168137254 168137440 -59387138 - MER5A DNA MER1_type 0 189 13 264 301 140 33 chr3 168137682 168137954 -59386624 - L2 LINE L2 -2 3311 3011 756 295 47 0 chr3 168138045 168138279 -59386299 - MIR SINE MIR 0 262 18 588 280 42 16 chr3 168138332 168138525 -59386053 - MIR SINE MIR -6 256 59 1999 137 14 3 chr3 168138659 168138951 -59385627 - AluJb SINE Alu -10 302 8 283 185 46 46 chr3 168139741 168139806 -59384772 - MIR SINE MIR -110 152 88 2111 115 0 0 chr3 168140678 168140957 -59383621 - AluSx SINE Alu -13 299 21 219 345 0 0 chr3 168141049 168141104 -59383474 + L2 LINE L2 3006 3060 -253 333 213 93 0 chr3 168141524 168141599 -59382979 - MER94 DNA DNA -52 82 1 214 293 111 20 chr3 168141603 168141702 -59382876 + MIR SINE MIR 86 193 -69 365 343 50 28 chr3 168141892 168142175 -59382403 - L2 LINE L2 -800 2514 2226 1878 144 0 27 chr3 168142183 168142323 -59382255 + AluSx SINE Alu 2 144 -158 1850 143 9 54 chr3 168142323 168142471 -59382107 + AluSx SINE Alu 1 129 -183 2409 95 3 0 chr3 168142471 168142775 -59381803 + AluSq SINE Alu 1 305 -8 1850 143 9 54 chr3 168142775 168142941 -59381637 + AluSx SINE Alu 129 301 -11 1878 144 0 27 chr3 168142941 168143099 -59381479 + AluSx SINE Alu 144 292 -10 944 199 94 20 chr3 168144892 168145093 -59379485 + AluJo SINE Alu 73 288 -24 766 181 53 31 chr3 168145221 168145448 -59379130 + L1MA4 LINE L1 6068 6299 -1 319 302 148 39 chr3 168146058 168146211 -59378367 + MIR3 SINE MIR 4 181 -27 528 30 0 0 chr3 168149525 168149591 -59374987 + (TTTC)n Simple_repeat Simple_repeat 4 69 0 24 0 0 0 chr3 168150102 168150126 -59374452 + GC_rich Low_complexity Low_complexity 1 24 0 198 0 0 0 chr3 168150447 168150469 -59374109 + (A)n Simple_repeat Simple_repeat 1 22 0 224 160 0 20 chr3 168150682 168150732 -59373846 + (CAAA)n Simple_repeat Simple_repeat 2 50 0 290 184 13 0 chr3 168152600 168152676 -59371902 + (TAGA)n Simple_repeat Simple_repeat 1 77 0 25 0 0 0 chr3 168153128 168153153 -59371425 + AT_rich Low_complexity Low_complexity 1 25 0 180 247 35 0 chr3 168156348 168156433 -59368145 + CT-rich Low_complexity Low_complexity 3 90 0 201 300 0 0 chr3 168156710 168156760 -59367818 + C-rich Low_complexity Low_complexity 3 52 0 237 214 0 0 chr3 168157196 168157238 -59367340 + L2 LINE L2 3261 3302 -11 21 36 0 0 chr3 168158121 168158149 -59366429 + AT_rich Low_complexity Low_complexity 1 28 0 369 0 0 0 chr3 168158989 168159030 -59365548 + (CA)n Simple_repeat Simple_repeat 2 42 0 309 78 294 0 chr3 168159397 168159448 -59365130 + MER5A DNA MER1_type 9 74 -115 225 0 0 0 chr3 168160611 168160636 -59363942 + (CAAA)n Simple_repeat Simple_repeat 2 26 0 894 238 107 27 chr3 168161537 168161798 -59362780 - MSTD LTR MaLR -114 282 1 5978 67 1 0 chr3 168162078 168162874 -59361704 - L1PA7 LINE L1 -8 6146 5350 912 93 0 0 chr3 168162876 168163015 -59361563 + L1P LINE L1 2636 2774 -3372 346 107 0 0 chr3 168163009 168163065 -59361513 - L1PA7 LINE L1 -805 5350 5295 * 228 184 0 0 chr3 168163459 168163497 -59361081 + MIR SINE MIR 113 150 -112 423 97 0 0 chr3 168164430 168164492 -59360086 - L1P4 LINE L1 -436 5738 5677 251 173 0 0 chr3 168164500 168164552 -59360026 + L1MA10 LINE L1 6277 6328 -6 203 114 23 0 chr3 168164555 168164599 -59359979 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 6571 32 0 2 chr3 168164601 168165418 -59359160 - L1PA5 LINE L1 -11 6143 5329 2269 98 56 63 chr3 168165421 168165985 -59358593 - L1P4 LINE L1 -475 5693 5142 528 247 95 82 chr3 168166878 168167194 -59357384 - MLT1I LTR MaLR -9 400 81 31 0 0 0 chr3 168167305 168167336 -59357242 + AT_rich Low_complexity Low_complexity 1 31 0 314 331 6 6 chr3 168167445 168167620 -59356958 - L1ME4a LINE L1 -219 5902 5728 194 320 31 0 chr3 168167693 168167790 -59356788 + MIR SINE MIR 131 230 -32 601 266 5 27 chr3 168167952 168168140 -59356438 + MER20 DNA MER1_type 1 184 -35 21 0 0 0 chr3 168169212 168169233 -59355345 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 168170952 168170980 -59353598 + AT_rich Low_complexity Low_complexity 1 28 0 229 376 59 18 chr3 168171240 168171410 -59353168 + L2 LINE L2 2916 3092 -180 27 73 0 0 chr3 168172105 168172160 -59352418 + AT_rich Low_complexity Low_complexity 1 55 0 30 0 0 0 chr3 168175834 168175864 -59348714 + AT_rich Low_complexity Low_complexity 1 30 0 198 191 0 0 chr3 168175997 168176039 -59348539 + (TG)n Simple_repeat Simple_repeat 1 42 0 324 0 0 0 chr3 168176318 168176354 -59348224 + (A)n Simple_repeat Simple_repeat 1 36 0 333 0 0 0 chr3 168176918 168176955 -59347623 + (A)n Simple_repeat Simple_repeat 1 37 0 210 118 0 0 chr3 168177151 168177185 -59347393 + (T)n Simple_repeat Simple_repeat 1 34 0 318 293 9 26 chr3 168178333 168178449 -59346129 + MIR SINE MIR 53 166 -96 781 37 28 0 chr3 168180903 168181011 -59343567 + (TAGA)n Simple_repeat Simple_repeat 4 114 0 2620 116 12 17 chr3 168184151 168184572 -59340006 - Tigger3b DNA MER2_type -610 621 203 13390 126 39 56 chr3 168184572 168184995 -59339583 - Tigger1 DNA MER2_type 0 2418 1989 1664 177 11 3 chr3 168184995 168185313 -59339265 - AluJo SINE Alu 0 320 1 13390 126 39 56 chr3 168185313 168185738 -59338840 - Tigger1 DNA MER2_type -429 1989 1558 2121 121 7 0 chr3 168185738 168186043 -59338535 - AluSp SINE Alu -6 307 1 13390 126 39 56 chr3 168186043 168187628 -59336950 - Tigger1 DNA MER2_type -860 1558 24 2135 124 3 0 chr3 168187639 168187930 -59336648 - AluSp SINE Alu -20 293 2 1071 188 56 5 chr3 168187934 168188131 -59336447 - Tigger3b DNA MER2_type -1024 207 1 2763 261 112 41 chr3 168188240 168189361 -59335217 - L2 LINE L2 -331 2982 1790 1568 189 0 41 chr3 168189910 168190227 -59334351 - AluJo SINE Alu -8 304 1 27 0 0 0 chr3 168190247 168190274 -59334304 + AT_rich Low_complexity Low_complexity 1 27 0 1792 153 7 0 chr3 168190274 168190549 -59334029 - AluSx SINE Alu -35 277 1 324 120 0 0 chr3 168191451 168191501 -59333077 + (T)n Simple_repeat Simple_repeat 1 50 0 443 239 11 85 chr3 168191973 168191994 -59332584 - L1MC5 LINE L1 -53 7908 7887 1543 171 7 27 chr3 168191994 168192287 -59332291 + AluJo SINE Alu 22 308 -4 443 239 11 85 chr3 168192287 168192453 -59332125 - L1MC5 LINE L1 -74 7887 7735 1504 65 20 0 chr3 168193016 168193217 -59331361 - L1PA14 LINE L1 0 6161 5957 234 236 0 96 chr3 168194156 168194175 -59330403 - L1MA10 LINE L1 0 6334 6316 649 196 112 71 chr3 168194175 168194399 -59330179 - L1ME1 LINE L1 -7 6159 5927 832 141 0 0 chr3 168194500 168194621 -59329957 - AluSc SINE Alu -187 122 2 304 197 68 0 chr3 168194915 168195047 -59329531 + (TA)n Simple_repeat Simple_repeat 1 141 0 29 70 0 0 chr3 168195921 168195978 -59328600 + AT_rich Low_complexity Low_complexity 1 57 0 311 246 15 82 chr3 168195996 168196130 -59328448 - L1MC4a LINE L1 -1916 5892 5768 28 29 0 0 chr3 168196137 168196172 -59328406 + AT_rich Low_complexity Low_complexity 1 35 0 931 98 16 67 chr3 168196203 168196397 -59328181 - L1MA7 LINE L1 -12 6279 6096 383 284 189 0 chr3 168196441 168196663 -59327915 - L1MC4a LINE L1 -2081 5727 5464 25 31 0 0 chr3 168197581 168197613 -59326965 + AT_rich Low_complexity Low_complexity 1 32 0 362 302 93 19 chr3 168199085 168199268 -59325310 + MIR SINE MIR 2 196 -12 286 341 0 12 chr3 168199644 168199726 -59324852 + MER5A DNA MER1_type 7 87 -102 2373 90 0 6 chr3 168199935 168200246 -59324332 + AluSc SINE Alu 1 309 0 29 28 0 0 chr3 168200465 168200501 -59324077 + AT_rich Low_complexity Low_complexity 1 36 0 1883 248 99 34 chr3 168200502 168201063 -59323515 - L2 LINE L2 -17 3296 2773 1665 188 0 7 chr3 168201063 168201350 -59323228 - AluJo SINE Alu -27 285 1 1883 248 99 34 chr3 168201350 168201844 -59322734 - L2 LINE L2 -540 2773 2177 22 0 0 0 chr3 168202484 168202506 -59322072 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr3 168202781 168202810 -59321768 + AT_rich Low_complexity Low_complexity 1 29 0 243 0 0 0 chr3 168203003 168203030 -59321548 + (TG)n Simple_repeat Simple_repeat 2 28 0 230 371 54 24 chr3 168203388 168203555 -59321023 - L2 LINE L2 -4 3309 3138 292 287 74 28 chr3 168204166 168204274 -59320304 + MIR SINE MIR 125 237 -25 1151 171 18 14 chr3 168204446 168204663 -59319915 - AluSg/x SINE Alu -15 297 80 405 221 39 10 chr3 168205199 168205303 -59319275 + MER94 DNA DNA 1 107 -27 221 308 13 115 chr3 168205347 168205503 -59319075 + L2 LINE L2 2943 3082 -190 436 209 39 31 chr3 168207426 168207555 -59317023 - L1ME LINE L1 -456 5714 5585 25 0 0 0 chr3 168209025 168209050 -59315528 + AT_rich Low_complexity Low_complexity 1 25 0 272 311 82 38 chr3 168209627 168209810 -59314768 - LTR67 LTR ERVL -17 540 350 524 285 26 47 chr3 168211052 168211245 -59313333 + MIR SINE MIR 3 191 -71 476 271 138 0 chr3 168211336 168211524 -59313054 - L2 LINE L2 -2266 1048 835 949 215 42 0 chr3 168211630 168211890 -59312688 - MER3 DNA MER1_type 0 2513 2243 539 175 9 28 chr3 168211899 168212023 -59312555 - MER3 DNA MER1_type -53 156 50 916 284 147 59 chr3 168212024 168212497 -59312081 - L2 LINE L2 -2504 810 260 1997 144 0 0 chr3 168212497 168212805 -59311773 + AluSx SINE Alu 1 308 0 916 284 147 59 chr3 168212805 168212988 -59311590 - L2 LINE L2 -3054 260 95 288 222 33 33 chr3 168213570 168213660 -59310918 - HAL1b LINE L1 -869 479 390 4648 199 46 29 chr3 168213777 168214752 -59309826 - L1MB4 LINE L1 -1 6179 5222 1387 231 7 14 chr3 168214752 168215042 -59309536 - AluJo SINE Alu -22 290 3 4648 199 46 29 chr3 168215042 168216193 -59308385 - L1MB4 LINE L1 -958 5222 4012 189 431 10 0 chr3 168216796 168216898 -59307680 + L2 LINE L2 3134 3236 -36 1918 141 0 3 chr3 168217286 168217596 -59306982 + AluJb SINE Alu 1 309 0 2065 85 0 0 chr3 168219114 168219373 -59305205 + AluSc SINE Alu 34 292 -17 21 71 0 0 chr3 168219928 168219970 -59304608 + AT_rich Low_complexity Low_complexity 1 42 0 1733 167 0 14 chr3 168220086 168220380 -59304198 + AluJo SINE Alu 23 312 0 331 254 26 0 chr3 168220424 168220538 -59304040 + (TA)n Simple_repeat Simple_repeat 2 118 0 271 250 74 134 chr3 168220627 168220757 -59303821 - MIR SINE MIR -28 234 121 2099 110 0 7 chr3 168220757 168221048 -59303530 + AluSg1 SINE Alu 1 289 -20 271 250 74 134 chr3 168221048 168221133 -59303445 - MIR SINE MIR -141 121 32 1977 139 7 3 chr3 168221456 168221751 -59302827 + AluJb SINE Alu 1 296 -16 316 331 87 7 chr3 168222003 168222158 -59302420 - MIR SINE MIR -62 146 13 34 0 0 0 chr3 168222220 168222254 -59302324 + AT_rich Low_complexity Low_complexity 1 34 0 2118 84 13 32 chr3 168222254 168222563 -59302015 - AluSg SINE Alu -2 308 6 2095 142 0 0 chr3 168222572 168222875 -59301703 - AluSx SINE Alu -9 303 1 2113 232 33 60 chr3 168222877 168223575 -59301003 - L1ME1 LINE L1 -33 6133 5455 1714 117 131 0 chr3 168223681 168223955 -59300623 + AluSp SINE Alu 1 310 -3 26 30 0 0 chr3 168224209 168224242 -59300336 + AT_rich Low_complexity Low_complexity 1 33 0 488 241 28 44 chr3 168224490 168224648 -59299930 + MIR SINE MIR 45 202 -60 325 0 0 60 chr3 168226341 168226391 -59298187 - L1HS LINE L1 0 6155 6109 223 309 37 12 chr3 168226773 168226854 -59297724 - MIR3 SINE MIR -125 83 1 322 239 0 0 chr3 168227002 168227069 -59297509 + L2 LINE L2 3246 3312 -1 278 394 71 8 chr3 168227151 168227278 -59297300 - MIR3 SINE MIR -66 142 8 193 233 70 0 chr3 168228988 168229031 -59295547 - MIR SINE MIR -66 142 97 3165 77 0 7 chr3 168229661 168230088 -59294490 + L1PA7 LINE L1 5729 6152 -2 2041 112 0 7 chr3 168230693 168230997 -59293581 + AluSc SINE Alu 1 302 -7 269 345 11 102 chr3 168231703 168231880 -59292698 - L2 LINE L2 -83 3189 3029 339 231 0 0 chr3 168232648 168232741 -59291837 + (TG)n Simple_repeat Simple_repeat 1 93 0 304 225 62 12 chr3 168232690 168232770 -59291808 + L1MCa LINE L1 2006 2089 -4337 * 362 297 155 14 chr3 168234249 168234397 -59290181 + MIR3 SINE MIR 30 198 -10 38 75 0 0 chr3 168234645 168234725 -59289853 + AT_rich Low_complexity Low_complexity 1 80 0 21 0 0 0 chr3 168236056 168236077 -59288501 + AT_rich Low_complexity Low_complexity 1 21 0 287 315 95 15 chr3 168237361 168237561 -59287017 - L2 LINE L2 0 3313 3098 375 263 94 0 chr3 168238394 168238554 -59286024 - MIR SINE MIR -3 259 85 29 60 0 0 chr3 168238598 168238648 -59285930 + AT_rich Low_complexity Low_complexity 1 50 0 266 301 134 53 chr3 168239863 168240072 -59284506 + L2 LINE L2 2521 2746 -568 1336 200 145 8 chr3 168240074 168240454 -59284124 + L1ME1 LINE L1 5704 6135 -31 234 167 0 0 chr3 168240500 168240560 -59284018 + (CA)n Simple_repeat Simple_repeat 1 60 0 191 297 62 39 chr3 168240761 168240889 -59283689 + L2 LINE L2 2736 2866 -448 327 234 16 0 chr3 168241373 168241437 -59283141 + Tigger3(Golem) DNA MER2_type 1 65 -2964 664 131 0 16 chr3 168241598 168241720 -59282858 + (TTCC)n Simple_repeat Simple_repeat 1 120 0 380 286 147 55 chr3 168242362 168242600 -59281978 + MIR SINE MIR 3 262 0 1469 186 50 4 chr3 168242738 168243017 -59281561 + AluJo SINE Alu 1 292 -20 274 164 0 30 chr3 168244090 168244157 -59280421 + GA-rich Low_complexity Low_complexity 6 70 0 182 61 0 30 chr3 168247019 168247052 -59277526 + (TTTTTG)n Simple_repeat Simple_repeat 3 34 0 207 69 0 0 chr3 168247754 168247783 -59276795 + (T)n Simple_repeat Simple_repeat 1 29 0 26 0 0 0 chr3 168247834 168247860 -59276718 + AT_rich Low_complexity Low_complexity 1 26 0 493 287 33 0 chr3 168249632 168249782 -59274796 - MIR SINE MIR -37 225 71 315 49 0 0 chr3 168259772 168259813 -59264765 + (TC)n Simple_repeat Simple_repeat 2 42 0 215 0 67 0 chr3 168259886 168259916 -59264662 + (TTTG)n Simple_repeat Simple_repeat 3 34 0 192 152 0 0 chr3 168262734 168262767 -59261811 + CT-rich Low_complexity Low_complexity 3 35 0 28 0 0 0 chr3 168264533 168264561 -59260017 + AT_rich Low_complexity Low_complexity 1 28 0 2184 106 0 0 chr3 168265319 168265621 -59258957 - AluSx SINE Alu -10 302 1 550 194 19 69 chr3 168265754 168265914 -59258664 - Charlie4 DNA MER1_type -1803 158 7 202 97 32 0 chr3 168268315 168268346 -59256232 + GA-rich Low_complexity Low_complexity 2 33 0 228 35 0 0 chr3 168274217 168274246 -59250332 + (TG)n Simple_repeat Simple_repeat 2 30 0 381 93 0 0 chr3 168274692 168274746 -59249832 + (A)n Simple_repeat Simple_repeat 1 54 0 265 263 25 0 chr3 168275212 168275292 -59249286 + GA-rich Low_complexity Low_complexity 2 83 0 23 33 0 0 chr3 168275571 168275601 -59248977 + GC_rich Low_complexity Low_complexity 1 30 0 350 113 0 16 chr3 168275637 168275699 -59248879 + (TCC)n Simple_repeat Simple_repeat 1 61 0 23 33 0 0 chr3 168277926 168277956 -59246622 + AT_rich Low_complexity Low_complexity 1 30 0 387 262 28 35 chr3 168279572 168279717 -59244861 + MER103 DNA DNA 17 160 -6 2683 74 6 0 chr3 168280110 168280448 -59244130 - L1PA7 LINE L1 -11 6143 5804 629 173 19 0 chr3 168280689 168280793 -59243785 - MER20 DNA MER1_type -4 215 110 270 56 0 0 chr3 168281350 168281386 -59243192 + (TC)n Simple_repeat Simple_repeat 1 36 0 189 74 0 0 chr3 168281654 168281681 -59242897 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 252 0 0 0 chr3 168283273 168283301 -59241277 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 2294 94 0 0 chr3 168284303 168284600 -59239978 - AluSc SINE Alu -12 297 1 219 139 0 0 chr3 168285336 168285372 -59239206 + (TA)n Simple_repeat Simple_repeat 2 37 0 2322 67 7 0 chr3 168285566 168285874 -59238704 - AluSp SINE Alu 0 310 1 673 126 13 106 chr3 168285901 168286052 -59238526 + MER20 DNA MER1_type 20 156 -63 414 0 0 0 chr3 168286208 168286254 -59238324 + (CA)n Simple_repeat Simple_repeat 2 47 0 303 28 0 0 chr3 168286254 168286290 -59238288 + (GA)n Simple_repeat Simple_repeat 1 36 0 2324 210 5 0 chr3 168286291 168286710 -59237868 + MER54A LTR ERVL 475 895 -6 217 60 0 80 chr3 168286911 168286961 -59237617 + (AGGGGG)n Simple_repeat Simple_repeat 2 47 0 210 118 0 0 chr3 168290299 168290333 -59234245 + (T)n Simple_repeat Simple_repeat 1 34 0 258 158 26 53 chr3 168295445 168295521 -59229057 + A-rich Low_complexity Low_complexity 2 75 0 305 24 24 0 chr3 168295690 168295732 -59228846 + (TG)n Simple_repeat Simple_repeat 2 44 0 183 80 0 0 chr3 168300180 168300205 -59224373 + (TTAA)n Simple_repeat Simple_repeat 4 28 0 246 246 14 14 chr3 168300458 168300527 -59224051 + CT-rich Low_complexity Low_complexity 5 73 0 562 241 57 13 chr3 168301389 168301547 -59223031 - L1MC5 LINE L1 -48 7913 7749 26 30 0 0 chr3 168301986 168302019 -59222559 + AT_rich Low_complexity Low_complexity 1 33 0 651 213 109 23 chr3 168302040 168302261 -59222317 + L1MC5 LINE L1 7687 7926 -35 351 181 120 90 chr3 168303440 168303573 -59221005 - MER5A DNA MER1_type 0 189 53 1278 161 112 22 chr3 168303581 168303848 -59220730 - AluJb SINE Alu -21 291 1 1982 131 17 47 chr3 168304087 168304447 -59220131 - L1MA5A LINE L1 0 6297 5949 474 271 44 44 chr3 168304750 168304979 -59219599 + L2 LINE L2 3083 3311 -2 871 275 77 45 chr3 168305724 168306128 -59218450 - L2 LINE L2 0 3313 2897 294 277 6 157 chr3 168306131 168306290 -59218288 - L2 LINE L2 -2 3270 3136 2453 73 13 0 chr3 168307381 168307683 -59216895 - AluSp SINE Alu -7 306 1 365 232 63 11 chr3 168308012 168308107 -59216471 - L2 LINE L2 -58 3255 3156 8046 174 19 17 chr3 168358136 168360671 -59163907 + L1PB1 LINE L1 3544 6081 -70 1364 134 46 38 chr3 168360671 168360932 -59163646 - L1 LINE L1 -1812 4334 4072 2194 121 0 7 chr3 168361107 168361413 -59163165 - AluSg SINE Alu -1 309 6 192 250 19 0 chr3 168361963 168362015 -59162563 - MIR SINE MIR -112 150 98 456 245 0 91 chr3 168362582 168362658 -59161920 - MIR SINE MIR -36 226 167 2325 99 0 3 chr3 168362658 168362971 -59161607 + AluSq SINE Alu 1 312 -1 456 245 0 91 chr3 168362971 168363037 -59161541 - MIR SINE MIR -95 167 97 421 198 45 27 chr3 168363879 168363990 -59160588 + Charlie1 DNA MER1_type 2636 2748 -13 235 256 43 111 chr3 168364684 168364801 -59159777 - L2 LINE L2 0 3272 3164 3742 219 40 26 chr3 168364901 168365784 -59158794 + MER45B DNA AcHobo 146 1040 0 252 145 0 40 chr3 168365817 168365868 -59158710 + (TTCC)n Simple_repeat Simple_repeat 1 50 -23 1935 114 11 0 chr3 168365868 168366131 -59158447 - AluSg SINE Alu -9 301 36 252 145 0 40 chr3 168366131 168366155 -59158423 + (TTCC)n Simple_repeat Simple_repeat 50 73 0 751 324 55 37 chr3 168366257 168366401 -59158177 - L2 LINE L2 -110 3203 3063 2125 129 33 33 chr3 168366401 168366765 -59157813 - THE1B LTR MaLR 0 364 1 751 324 55 37 chr3 168366765 168367368 -59157210 - L2 LINE L2 -250 3063 2442 1972 129 4 0 chr3 168367768 168368040 -59156538 + AluSx SINE Alu 1 273 -39 993 300 16 50 chr3 168368192 168368572 -59156006 - L2 LINE L2 -33 3280 2914 311 231 13 26 chr3 168368685 168368763 -59155815 - L1MC/D LINE L1 -2196 5612 5536 845 338 23 32 chr3 168368794 168369137 -59155441 - L2 LINE L2 -436 2878 2539 285 300 100 54 chr3 168371672 168371802 -59152776 + L2 LINE L2 3137 3272 0 703 235 54 6 chr3 168371840 168372006 -59152572 + MLT1E3 LTR MaLR 451 624 0 762 215 161 0 chr3 168372144 168372367 -59152211 + L1MD2 LINE L1 5422 5655 -511 416 171 13 0 chr3 168372467 168372543 -59152035 + L1MD2 LINE L1 5853 5929 -430 1694 238 89 9 chr3 168372543 168373005 -59151573 - MLT1E2 LTR MaLR 0 626 128 788 251 31 14 chr3 168373060 168373283 -59151295 + L1ME1 LINE L1 5922 6148 -18 1495 203 39 42 chr3 168374532 168374891 -59149687 + MLT1A2 LTR MaLR 1 358 -16 2210 107 74 3 chr3 168374894 168375231 -59149347 + THE1B LTR MaLR 4 364 0 4442 43 0 0 chr3 168376536 168377070 -59147508 + L1PA5 LINE L1 5619 6152 -2 1406 219 32 4 chr3 168380022 168380300 -59144278 + AluJo SINE Alu 1 286 -26 296 83 21 0 chr3 168380300 168380348 -59144230 + (GGGAA)n Simple_repeat Simple_repeat 3 51 0 21 0 0 0 chr3 168380476 168380497 -59144081 + AT_rich Low_complexity Low_complexity 1 21 0 219 36 0 0 chr3 168381512 168381540 -59143038 + (CA)n Simple_repeat Simple_repeat 2 29 0 12561 48 1 0 chr3 168382770 168384486 -59140092 + L1P2 LINE L1 3823 5540 -614 22 35 0 0 chr3 168385138 168385167 -59139411 + AT_rich Low_complexity Low_complexity 1 29 0 467 331 22 5 chr3 168385323 168385507 -59139071 + L2 LINE L2 2353 2539 -775 1164 279 159 40 chr3 168385903 168386564 -59138014 + L1MC4a LINE L1 5618 6199 -1609 1674 189 0 0 chr3 168386564 168386844 -59137734 - AluJb SINE Alu -10 302 23 1164 279 159 40 chr3 168386844 168387362 -59137216 + L1MC4a LINE L1 6199 6938 -870 303 149 0 45 chr3 168387396 168387463 -59137115 + L1MB7 LINE L1 4583 4646 -1500 3691 195 24 19 chr3 168387468 168388426 -59136152 + L1MB7 LINE L1 5143 6100 -84 2884 92 34 7 chr3 168388533 168388948 -59135630 + L1PA11 LINE L1 5743 6168 -6 28 61 0 0 chr3 168389050 168389099 -59135479 + AT_rich Low_complexity Low_complexity 1 49 0 423 223 0 0 chr3 168389752 168389864 -59134714 + (TG)n Simple_repeat Simple_repeat 2 113 0 25 0 0 0 chr3 168390756 168390781 -59133797 + AT_rich Low_complexity Low_complexity 1 25 0 30167 119 15 64 chr3 168391118 168391774 -59132804 - L1PA7 LINE L1 -2 6152 5466 2128 122 0 10 chr3 168391774 168392068 -59132510 - AluSg SINE Alu -19 291 1 30167 119 15 64 chr3 168392068 168397879 -59126699 - L1PA7 LINE L1 -688 5466 12 202 154 46 46 chr3 168398863 168398928 -59125650 + T-rich Low_complexity Low_complexity 2 66 0 566 194 146 0 chr3 168399912 168400077 -59124501 + MER53 DNA DNA 1 189 0 666 218 70 0 chr3 168400534 168400690 -59123888 + L1MC4a LINE L1 6711 6877 -931 796 222 59 19 chr3 168400696 168400966 -59123612 + L1MC4 LINE L1 7023 7303 -739 2514 246 36 24 chr3 168400966 168401032 -59123546 - MER82 DNA MER2_type 0 653 589 1930 154 10 0 chr3 168401032 168401162 -59123416 + AluSx SINE Alu 1 128 -184 189 74 0 0 chr3 168401162 168401189 -59123389 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1930 154 10 0 chr3 168401189 168401351 -59123227 + AluSx SINE Alu 128 296 -16 2514 246 36 24 chr3 168401351 168401919 -59122659 - MER82 DNA MER2_type -64 589 11 1482 216 71 87 chr3 168401929 168402708 -59121870 + L1MC4 LINE L1 7302 7995 0 198 324 116 70 chr3 168402754 168402991 -59121587 - L2 LINE L2 -1326 1988 1722 2028 158 0 0 chr3 168402991 168403302 -59121276 - AluSx SINE Alu 0 312 2 198 324 116 70 chr3 168403302 168403478 -59121100 - L2 LINE L2 -1592 1722 1556 43 0 0 0 chr3 168403533 168403576 -59121002 + AT_rich Low_complexity Low_complexity 1 43 0 2899 93 44 7 chr3 168403778 168404206 -59120372 + MLT2A1 LTR ERVL 1 444 0 41977 85 11 8 chr3 168404206 168409418 -59115160 + HERVL-A1 LTR ERVL 1 5236 -418 234 0 0 0 chr3 168409418 168409444 -59115134 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 41977 85 11 8 chr3 168409444 168409865 -59114713 + HERVL-A1 LTR ERVL 5236 5654 0 1431 111 36 9 chr3 168409867 168410092 -59114486 + MLT2A1 LTR ERVL 3 233 -211 7799 20 0 0 chr3 168410494 168411874 -59112704 + L1PA3 LINE L1 4775 6154 -1 5762 38 1 0 chr3 168412107 168413149 -59111429 + L1P2 LINE L1 4684 5726 -428 183 80 0 0 chr3 168413342 168413367 -59111211 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 209 105 0 26 chr3 168413373 168413411 -59111167 + (TTCCC)n Simple_repeat Simple_repeat 4 40 0 * 462 83 0 36 chr3 168413403 168413487 -59111091 + (TTTC)n Simple_repeat Simple_repeat 1 81 0 1973 142 0 16 chr3 168413944 168414247 -59110331 - AluSx SINE Alu -14 298 1 1590 198 75 26 chr3 168415427 168415775 -59108803 - MLT1A1 LTR MaLR 0 365 1 2179 94 24 0 chr3 168415874 168416162 -59108416 + AluY SINE Alu 1 295 -16 322 329 25 31 chr3 168418208 168418369 -59106209 - L2 LINE L2 -76 3237 3078 801 291 25 17 chr3 168418521 168418762 -59105816 + MLT1J LTR MaLR 226 468 -43 3158 303 91 23 chr3 168418803 168420306 -59104272 - L2 LINE L2 -280 3033 1427 1501 73 0 0 chr3 168420575 168420784 -59103794 - AluY SINE Alu 0 313 105 1956 130 17 7 chr3 168421249 168421541 -59103037 - AluSx SINE Alu -17 295 1 2023 153 73 34 chr3 168423129 168423541 -59101037 - MSTA LTR MaLR 0 428 1 24 0 0 0 chr3 168424789 168424813 -59099765 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 168426531 168426552 -59098026 + AT_rich Low_complexity Low_complexity 1 21 0 342 273 74 98 chr3 168428129 168428426 -59096152 - MLT1K LTR MaLR -42 546 257 324 48 0 0 chr3 168428587 168428629 -59095949 + (CA)n Simple_repeat Simple_repeat 2 43 0 22 80 0 0 chr3 168429000 168429050 -59095528 + AT_rich Low_complexity Low_complexity 1 50 0 2321 99 3 0 chr3 168429261 168429563 -59095015 - AluSp SINE Alu -10 303 1 22 0 0 0 chr3 168429999 168430021 -59094557 + AT_rich Low_complexity Low_complexity 1 22 0 333 263 71 10 chr3 168430052 168430151 -59094427 + MIR SINE MIR 98 202 -60 22 0 0 0 chr3 168430181 168430203 -59094375 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 168430762 168430784 -59093794 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 168430909 168430930 -59093648 + AT_rich Low_complexity Low_complexity 1 21 0 196 29 0 57 chr3 168434532 168434567 -59090011 + (TA)n Simple_repeat Simple_repeat 1 33 0 272 169 0 17 chr3 168434736 168434795 -59089783 + (CA)n Simple_repeat Simple_repeat 2 59 0 * 605 297 85 54 chr3 168434793 168435185 -59089393 - MLT1I LTR MaLR -3 406 3 974 245 150 9 chr3 168435336 168435683 -59088895 + MSTD LTR MaLR 1 396 0 620 59 12 0 chr3 168436205 168436290 -59088288 + (GAAA)n Simple_repeat Simple_repeat 4 89 0 303 305 66 61 chr3 168436464 168436661 -59087917 + L1MC/D LINE L1 5453 5650 -2158 412 148 34 0 chr3 168436698 168436786 -59087792 + GA-rich Low_complexity Low_complexity 3 93 0 30 0 0 0 chr3 168436884 168436914 -59087664 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 168439154 168439175 -59085403 + AT_rich Low_complexity Low_complexity 1 21 0 27 62 0 0 chr3 168440205 168440253 -59084325 + AT_rich Low_complexity Low_complexity 1 48 0 275 296 73 57 chr3 168440471 168440785 -59083793 + L1ME LINE L1 5310 5628 -493 26 0 0 0 chr3 168441396 168441422 -59083156 + AT_rich Low_complexity Low_complexity 1 26 0 236 233 150 0 chr3 168442302 168442362 -59082216 + L2 LINE L2 3203 3271 -1 213 336 63 28 chr3 168443537 168443680 -59080898 - L2 LINE L2 -4 3268 3121 594 156 0 57 chr3 168444526 168444648 -59079930 + MLT1E2 LTR MaLR 4 118 -508 1074 213 71 0 chr3 168444652 168444863 -59079715 + AluJo SINE Alu 9 234 -78 1043 238 103 34 chr3 168444963 168445398 -59079180 + MLT1E2 LTR MaLR 122 624 0 922 246 39 42 chr3 168446975 168447259 -59077319 + MER63B DNA MER1_type 7 289 -147 975 148 62 11 chr3 168447260 168447436 -59077142 - MLT2B2 LTR ERVL -2 513 329 922 231 116 67 chr3 168447455 168447801 -59076777 + MLT1A1 LTR MaLR 1 363 -2 * 1643 197 27 7 chr3 168447801 168448088 -59076490 - MLT2B2 LTR ERVL -193 322 30 383 286 11 0 chr3 168448085 168448176 -59076402 + MER63B DNA MER1_type 343 434 -1 * 192 149 0 0 chr3 168449325 168449372 -59075206 + (TG)n Simple_repeat Simple_repeat 2 48 0 29 60 0 0 chr3 168450220 168450270 -59074308 + AT_rich Low_complexity Low_complexity 1 50 0 1843 100 0 31 chr3 168450587 168450877 -59073701 - L1PA8 LINE L1 0 6172 5892 373 222 40 71 chr3 168452145 168452244 -59072334 - L2 LINE L2 -11 3302 3207 182 200 0 0 chr3 168453048 168453083 -59071495 + MIR SINE MIR 81 115 -147 2004 125 56 39 chr3 168453639 168453976 -59070602 + THE1B LTR MaLR 22 364 0 10451 195 37 18 chr3 168454612 168455037 -59069541 + L1PA14 LINE L1 3244 3659 -2502 513 58 0 0 chr3 168455037 168455106 -59069472 + (CA)n Simple_repeat Simple_repeat 1 69 0 10451 195 37 18 chr3 168455106 168456583 -59067995 + L1PA14 LINE L1 3659 5106 -1055 1879 126 19 0 chr3 168456583 168456852 -59067726 + AluSx SINE Alu 39 312 0 10451 195 37 18 chr3 168456852 168457187 -59067391 + L1PA14 LINE L1 5106 5433 -728 1951 150 0 0 chr3 168457187 168457487 -59067091 + AluSx SINE Alu 1 300 -12 10451 195 37 18 chr3 168457487 168458113 -59066465 + L1PA14 LINE L1 5433 6161 0 357 316 25 25 chr3 168458125 168458251 -59066327 - MER5B DNA MER1_type -3 175 61 2039 39 0 16 chr3 168458283 168458540 -59066038 - L1PA5 LINE L1 0 6154 5902 763 285 123 9 chr3 168458789 168459189 -59065389 + L2 LINE L2 2601 3052 -261 918 255 38 25 chr3 168461011 168461246 -59063332 + MIR SINE MIR 3 240 -22 22 0 0 0 chr3 168461325 168461347 -59063231 + AT_rich Low_complexity Low_complexity 1 22 0 249 384 18 0 chr3 168462971 168463083 -59061495 + MIR3 SINE MIR 67 180 -28 408 171 79 0 chr3 168463396 168463472 -59061106 - AluJ/FRAM SINE Alu -14 298 217 682 131 0 0 chr3 168463473 168463572 -59061006 - AluSg SINE Alu -211 99 1 23 33 0 0 chr3 168463625 168463655 -59060923 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr3 168464598 168464623 -59059955 + AT_rich Low_complexity Low_complexity 1 25 0 1451 198 58 0 chr3 168466576 168466884 -59057694 - MER58B DNA MER1_type -15 326 1 510 252 133 18 chr3 168467901 168468127 -59056451 + MIR SINE MIR 10 261 -1 366 310 123 5 chr3 168468229 168468416 -59056162 - HAL1 LINE L1 -96 2411 2203 26 74 0 0 chr3 168468866 168468920 -59055658 + AT_rich Low_complexity Low_complexity 1 54 0 308 243 0 0 chr3 168469263 168469337 -59055241 - L1ME3A LINE L1 -8 6162 6089 1719 237 62 25 chr3 168469339 168469824 -59054754 - L1ME3A LINE L1 -233 5937 5435 293 345 0 40 chr3 168470069 168470217 -59054361 + MER5B DNA MER1_type 7 148 -30 31 76 0 0 chr3 168471545 168471611 -59052967 + AT_rich Low_complexity Low_complexity 1 66 0 185 219 0 16 chr3 168472293 168472357 -59052221 + (TG)n Simple_repeat Simple_repeat 2 64 0 21 0 0 0 chr3 168473515 168473536 -59051042 + AT_rich Low_complexity Low_complexity 1 21 0 3523 141 67 3 chr3 168477818 168478448 -59046130 + L1MB3 LINE L1 5510 6179 -4 3138 120 32 6 chr3 168478611 168479078 -59045500 + MER1A DNA MER1_type 49 527 -2 399 253 57 62 chr3 168479352 168479546 -59045032 - Charlie8 DNA MER1_type -2173 244 52 180 77 0 0 chr3 168479731 168479757 -59044821 + (TG)n Simple_repeat Simple_repeat 2 27 0 573 253 147 0 chr3 168480205 168480375 -59044203 - MIR SINE MIR -61 201 7 1067 138 42 0 chr3 168480581 168480770 -59043808 - MER63 DNA MER1_type -815 246 50 1784 262 45 0 chr3 168480846 168481292 -59043286 + MER69 DNA AcHobo 227 692 -534 774 223 60 28 chr3 168481403 168481685 -59042893 + MER69 DNA AcHobo 1451 1741 -785 187 270 79 16 chr3 168481787 168481850 -59042728 + MIR3 SINE MIR 2 68 -140 1979 134 0 7 chr3 168482867 168483159 -59041419 + AluSx SINE Alu 2 291 -21 213 185 46 0 chr3 168485238 168485303 -59039275 + CT-rich Low_complexity Low_complexity 2 69 0 343 287 0 61 chr3 168485304 168485419 -59039159 + L2 LINE L2 3204 3311 -2 576 246 0 8 chr3 168487407 168487541 -59037037 + FLAM_A SINE Alu 1 133 0 521 294 123 68 chr3 168487556 168487866 -59036712 - MER102b DNA MER1_type -14 327 1 441 264 58 45 chr3 168488640 168488767 -59035811 + MIR SINE MIR 34 165 -97 1984 124 7 13 chr3 168488767 168489065 -59035513 + AluSx SINE Alu 3 298 -14 441 264 58 45 chr3 168489065 168489092 -59035486 + MIR SINE MIR 165 190 -72 507 324 59 27 chr3 168489766 168489988 -59034590 - MIR SINE MIR -32 230 2 321 259 130 38 chr3 168491539 168491670 -59032908 + MIR SINE MIR 57 199 -63 390 303 144 14 chr3 168492076 168492284 -59032294 + MIR SINE MIR 23 257 -5 1606 295 60 12 chr3 168494595 168494909 -59029669 - MLT1H1 LTR MaLR 0 555 205 2036 160 0 0 chr3 168494909 168495215 -59029363 - AluJb SINE Alu -6 306 1 1606 295 60 12 chr3 168495215 168495419 -59029159 - MLT1H1 LTR MaLR -350 205 12 43 0 0 0 chr3 168495564 168495607 -59028971 + AT_rich Low_complexity Low_complexity 1 43 0 216 222 37 0 chr3 168496019 168496073 -59028505 + (ATTG)n Simple_repeat Simple_repeat 1 56 0 403 239 46 31 chr3 168496291 168496421 -59028157 + MIR SINE MIR 118 249 -13 5877 138 11 6 chr3 168496474 168497765 -59026813 - L1PB1 LINE L1 -5 6862 5566 2738 242 75 13 chr3 168497748 168498825 -59025753 - L1PB1 LINE L1 -2216 4646 3355 * 10762 142 76 13 chr3 168498926 168500764 -59023814 - L1PB1 LINE L1 -4908 1955 2 2160 104 3 7 chr3 168500836 168501135 -59023443 + AluY SINE Alu 1 298 -13 510 293 31 26 chr3 168501238 168501429 -59023149 + MIR SINE MIR 6 197 -65 446 325 221 18 chr3 168501503 168501995 -59022583 - L3 LINE CR1 -3 1574 983 210 189 19 0 chr3 168502205 168502258 -59022320 + (TA)n Simple_repeat Simple_repeat 2 55 0 219 69 0 0 chr3 168502258 168502287 -59022291 + (CA)n Simple_repeat Simple_repeat 2 30 0 291 122 0 0 chr3 168502287 168502336 -59022242 + (GA)n Simple_repeat Simple_repeat 1 49 0 1159 222 0 34 chr3 168502564 168502803 -59021775 - AluJo SINE Alu -81 231 1 1066 75 0 8 chr3 168503463 168503596 -59020982 + AluSp SINE Alu 1 132 -181 30 0 0 0 chr3 168504399 168504429 -59020149 + AT_rich Low_complexity Low_complexity 1 30 0 1949 194 90 40 chr3 168505891 168506370 -59018208 + MLT1D LTR MaLR 1 503 -2 219 314 100 0 chr3 168506428 168506498 -59018080 - MIR SINE MIR -128 134 58 31 76 0 0 chr3 168508253 168508319 -59016259 + AT_rich Low_complexity Low_complexity 1 66 0 302 248 40 16 chr3 168508436 168508561 -59016017 - L1M4 LINE L1 -2169 3977 3850 245 348 121 7 chr3 168508569 168508710 -59015868 - MIR SINE MIR -86 176 20 218 200 44 0 chr3 168508731 168508776 -59015802 + GA-rich Low_complexity Low_complexity 2 48 0 21 36 0 0 chr3 168508825 168508853 -59015725 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr3 168509026 168509052 -59015526 + AT_rich Low_complexity Low_complexity 1 26 0 223 350 67 0 chr3 168509507 168509627 -59014951 + L2 LINE L2 2814 2941 -331 360 336 7 27 chr3 168509651 168509800 -59014778 - HAL1 LINE L1 -1334 1173 1028 201 396 54 0 chr3 168509801 168509912 -59014666 - L2 LINE L2 -19 3253 3137 465 284 109 35 chr3 168509965 168510166 -59014412 - MIR SINE MIR -16 246 31 216 0 0 0 chr3 168510466 168510490 -59014088 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1352 133 153 12 chr3 168510496 168510737 -59013841 - AluSx SINE Alu -37 275 1 502 257 20 27 chr3 168510751 168510899 -59013679 + MIR SINE MIR 74 220 -42 29 0 0 0 chr3 168561260 168561289 -58963289 + AT_rich Low_complexity Low_complexity 1 29 0 253 291 13 44 chr3 168561312 168561470 -58963108 - L1MEd LINE L1 -4914 1482 1330 2236 93 0 0 chr3 168561482 168561762 -58962816 + AluSg SINE Alu 1 280 -30 216 0 0 0 chr3 168561770 168561794 -58962784 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 257 75 75 12 chr3 168561795 168561875 -58962703 + (TA)n Simple_repeat Simple_repeat 1 85 0 311 274 38 91 chr3 168561898 168562161 -58962417 - L1MEd LINE L1 -5130 1279 1031 24 32 0 0 chr3 168562249 168562280 -58962298 + AT_rich Low_complexity Low_complexity 1 31 0 1620 161 34 24 chr3 168563078 168563370 -58961208 + AluJo SINE Alu 3 297 -15 466 330 35 22 chr3 168563708 168563938 -58960640 + L2 LINE L2 2103 2335 -979 983 268 118 62 chr3 168563938 168564529 -58960049 + L2 LINE L2 2592 3216 -97 1342 138 0 4 chr3 168564979 168565205 -58959373 + LTR26E LTR ERV1 1 296 -326 23 0 0 0 chr3 168565423 168565446 -58959132 + AT_rich Low_complexity Low_complexity 1 23 0 1854 140 25 53 chr3 168565450 168565771 -58958807 + AluSx SINE Alu 1 312 0 200 308 90 0 chr3 168565928 168566006 -58958572 + MIR SINE MIR 91 175 -87 1571 174 29 48 chr3 168566372 168566682 -58957896 + AluJb SINE Alu 3 306 -6 519 165 12 0 chr3 168566737 168566822 -58957756 - MER49 LTR ERV1 -50 873 788 245 241 65 28 chr3 168566923 168567031 -58957547 + L1ME LINE L1 5717 5828 -334 2528 37 7 0 chr3 168567061 168567356 -58957222 + AluY SINE Alu 1 297 -14 253 336 45 18 chr3 168567759 168567869 -58956709 - MLT2E LTR ERVL -472 156 44 21 82 0 0 chr3 168568803 168568852 -58955726 + AT_rich Low_complexity Low_complexity 1 49 0 1774 147 51 3 chr3 168570210 168570503 -58954075 - AluSq SINE Alu -6 307 1 1114 243 143 6 chr3 168570849 168571178 -58953400 - MLT1A2 LTR MaLR 0 374 1 2088 125 3 0 chr3 168571779 168572074 -58952504 - AluSx SINE Alu -16 296 1 746 261 160 37 chr3 168572783 168573158 -58951420 - MLT1H LTR MaLR -11 538 118 432 192 0 0 chr3 168573171 168573270 -58951308 + (TA)n Simple_repeat Simple_repeat 2 100 0 324 0 0 0 chr3 168573280 168573318 -58951260 - MER57B LTR ERV1 -71 363 326 250 210 97 0 chr3 168573857 168573919 -58950659 - MLT1J LTR MaLR 0 511 444 1909 108 0 36 chr3 168574010 168574288 -58950290 + AluSx SINE Alu 1 268 -44 21 0 0 0 chr3 168574290 168574311 -58950267 + AT_rich Low_complexity Low_complexity 1 21 0 2306 118 0 0 chr3 168575083 168575389 -58949189 - AluSx SINE Alu -6 306 1 27 49 0 0 chr3 168575634 168575675 -58948903 + AT_rich Low_complexity Low_complexity 1 41 0 622 133 56 67 chr3 168575729 168575881 -58948697 - L1MA7 LINE L1 0 6291 6140 585 193 141 22 chr3 168575881 168576016 -58948562 - FRAM SINE Alu -15 151 1 622 133 56 67 chr3 168576016 168576043 -58948535 - L1MA7 LINE L1 -151 6140 6114 331 279 125 29 chr3 168576073 168576209 -58948369 + MLT1K LTR MaLR 377 525 -63 1198 279 11 7 chr3 168576390 168576666 -58947912 + MLT2E LTR ERVL 36 312 -316 1879 135 67 94 chr3 168576702 168577118 -58947460 + MER39 LTR ERV1 303 707 0 612 303 46 21 chr3 168577134 168577418 -58947160 + MLT2E LTR ERVL 336 626 -2 318 26 0 0 chr3 168578029 168578068 -58946510 + (CA)n Simple_repeat Simple_repeat 2 40 0 288 173 39 8 chr3 168579443 168579570 -58945008 + (TA)n Simple_repeat Simple_repeat 1 131 0 23 0 0 0 chr3 168580065 168580088 -58944490 + AT_rich Low_complexity Low_complexity 1 23 0 2955 243 35 14 chr3 168580462 168580884 -58943694 - L1 LINE L1 -2597 3549 3137 1838 126 14 11 chr3 168580884 168581203 -58943375 - AluSg SINE Alu 0 320 1 2955 243 35 14 chr3 168581203 168581616 -58942962 - L1 LINE L1 -3009 3137 2696 4634 187 51 17 chr3 168581643 168583363 -58941215 + L1MA5 LINE L1 4518 6300 0 23 33 0 0 chr3 168583569 168583599 -58940979 + AT_rich Low_complexity Low_complexity 1 30 0 240 288 110 62 chr3 168586090 168586236 -58938342 - MIR SINE MIR -76 186 34 302 224 13 0 chr3 168586582 168586658 -58937920 - MER116 DNA Mariner -3 77 1 189 154 0 0 chr3 168586765 168586804 -58937774 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 292 277 0 0 chr3 168586903 168586968 -58937610 + L2 LINE L2 3244 3308 -5 321 331 152 43 chr3 168588109 168588154 -58936424 + L2 LINE L2 2898 2937 -376 1757 201 34 14 chr3 168588154 168588512 -58936066 - MLT1A1 LTR MaLR 0 365 1 321 331 152 43 chr3 168588512 168588835 -58935743 + L2 LINE L2 2937 3306 -7 361 280 97 23 chr3 168590325 168590500 -58934078 - MIR SINE MIR 0 262 75 22 0 0 0 chr3 168591855 168591877 -58932701 + AT_rich Low_complexity Low_complexity 1 22 0 387 0 0 0 chr3 168592344 168592387 -58932191 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 1727 264 121 4 chr3 168595023 168595512 -58929066 + MLT1E1 LTR MaLR 3 548 -106 212 347 173 7 chr3 168595648 168595798 -58928780 - L3b LINE CR1 -225 1358 1184 1593 171 48 3 chr3 168596239 168596548 -58928030 - L1MB2 LINE L1 -4 6167 5845 718 184 14 128 chr3 168596550 168596768 -58927810 - MLT2D LTR ERVL -4 410 218 4420 205 36 27 chr3 168596768 168597339 -58927239 - L1MB2 LINE L1 -363 5820 5256 1369 211 110 6 chr3 168597339 168597676 -58926902 + MLT1A2 LTR MaLR 3 374 0 4420 205 36 27 chr3 168597676 168598696 -58925882 - L1MB2 LINE L1 -927 5256 4219 613 228 86 25 chr3 168599094 168599108 -58925470 - MER5B DNA MER1_type -3 175 163 1000 209 11 0 chr3 168599108 168599295 -58925283 + MER5A DNA MER1_type 1 189 0 613 228 86 25 chr3 168599295 168599442 -58925136 - MER5B DNA MER1_type -15 163 4 549 224 97 24 chr3 168599488 168599653 -58924925 - MER5B DNA MER1_type 0 178 2 252 228 18 0 chr3 168599865 168599922 -58924656 + MER5B DNA MER1_type 1 58 -120 27 73 0 0 chr3 168600082 168600137 -58924441 + AT_rich Low_complexity Low_complexity 1 55 0 1272 197 20 27 chr3 168600160 168600493 -58924085 - AluJo SINE Alu 0 331 1 1665 168 3 3 chr3 168600628 168600920 -58923658 + AluJb SINE Alu 10 301 -11 32 0 0 0 chr3 168601536 168601568 -58923010 + AT_rich Low_complexity Low_complexity 1 32 0 417 20 0 0 chr3 168601931 168601981 -58922597 + (CA)n Simple_repeat Simple_repeat 2 51 0 25 0 0 0 chr3 168602106 168602131 -58922447 + AT_rich Low_complexity Low_complexity 1 25 0 1325 190 27 126 chr3 168604260 168604665 -58919913 + MLT1A1 LTR MaLR 1 365 0 249 382 52 21 chr3 168605248 168605439 -58919139 - L2 LINE L2 -406 2908 2712 * 342 263 0 113 chr3 168605433 168605566 -58919012 - MIR SINE MIR -137 125 8 340 316 36 18 chr3 168606569 168606737 -58917841 - L1ME4a LINE L1 -235 5886 5716 2745 13 0 0 chr3 168606924 168607230 -58917348 - AluYb8 SINE Alu -12 306 1 405 380 44 8 chr3 168607230 168607480 -58917098 + L2 LINE L2 2812 3070 -202 534 113 0 0 chr3 168607480 168607560 -58917018 + MADE1 DNA Mariner 1 80 0 6091 149 13 18 chr3 168607588 168609169 -58915409 + L1MA3 LINE L1 4639 6301 -4 227 299 65 0 chr3 168609279 168609356 -58915222 + L2 LINE L2 3178 3259 -13 217 238 0 0 chr3 168609368 168609410 -58915168 - L2 LINE L2 -15 3298 3257 423 271 23 56 chr3 168609433 168609618 -58914960 - L1ME4a LINE L1 -458 5663 5485 368 247 0 0 chr3 168610563 168610640 -58913938 + MER94 DNA DNA 55 131 -3 676 260 85 70 chr3 168611028 168611162 -58913416 + L2 LINE L2 2201 2331 -983 1420 220 27 24 chr3 168611162 168611535 -58913043 - MLT1A2 LTR MaLR 0 374 1 676 260 85 70 chr3 168611535 168611654 -58912924 + L2 LINE L2 2331 2463 -851 1711 136 42 42 chr3 168611654 168611844 -58912734 - AluJb SINE Alu -4 308 116 225 0 0 0 chr3 168611844 168611869 -58912709 + (TG)n Simple_repeat Simple_repeat 2 26 0 1711 136 42 42 chr3 168611869 168611986 -58912592 - AluJb SINE Alu -195 117 1 676 260 85 70 chr3 168611986 168612062 -58912516 + L2 LINE L2 2463 2536 -778 196 250 0 54 chr3 168612071 168612127 -58912451 + L2 LINE L2 2791 2843 -471 678 312 75 10 chr3 168612314 168612622 -58911956 - HAL1b LINE L1 -774 574 247 227 204 19 19 chr3 168613044 168613098 -58911480 + CT-rich Low_complexity Low_complexity 5 58 0 1672 114 0 43 chr3 168614148 168614402 -58910176 + AluSq SINE Alu 1 243 -70 828 200 13 81 chr3 168614615 168614850 -58909728 + MER20 DNA MER1_type 1 219 0 21 36 0 0 chr3 168615842 168615870 -58908708 + AT_rich Low_complexity Low_complexity 1 28 0 2186 153 8 16 chr3 168617481 168617860 -58906718 + L1PA15 LINE L1 5789 6164 -1 228 309 80 51 chr3 168618238 168618413 -58906165 - LTR67 LTR ERVL -12 545 366 2219 103 0 3 chr3 168618973 168619275 -58905303 - AluSq SINE Alu -10 303 3 33 43 0 0 chr3 168619658 168619705 -58904873 + AT_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr3 168620285 168620308 -58904270 + AT_rich Low_complexity Low_complexity 1 23 0 185 108 27 0 chr3 168620984 168621021 -58903557 + (CAGAGA)n Simple_repeat Simple_repeat 4 41 0 1396 211 66 33 chr3 168621056 168621442 -58903136 - MER39 LTR ERV1 0 707 175 229 236 0 132 chr3 168621424 168621530 -58903048 - MER39 LTR ERV1 -430 277 186 * 260 333 87 28 chr3 168622072 168622383 -58902195 - L2 LINE L2 -286 2986 2596 24 0 0 0 chr3 168623804 168623828 -58900750 + AT_rich Low_complexity Low_complexity 1 24 0 297 51 0 0 chr3 168623955 168623994 -58900584 + (CA)n Simple_repeat Simple_repeat 2 40 0 422 340 95 33 chr3 168624463 168625072 -58899506 - L1M4 LINE L1 -1042 5104 4458 21 0 0 0 chr3 168625557 168625578 -58899000 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3 168625845 168625877 -58898701 + AT_rich Low_complexity Low_complexity 1 32 0 1321 144 173 35 chr3 168625883 168626196 -58898382 - THE1C LTR MaLR 0 375 20 388 132 0 0 chr3 168626236 168626304 -58898274 - L1MA7 LINE L1 -16 6275 6208 1966 134 10 0 chr3 168626690 168626988 -58897590 - AluSx SINE Alu -11 301 1 180 77 0 0 chr3 168627888 168627914 -58896664 + (TTAAA)n Simple_repeat Simple_repeat 4 29 0 1368 247 97 70 chr3 168628632 168628783 -58895795 - Zaphod DNA AcHobo -3 4028 3883 1947 145 0 7 chr3 168628783 168629079 -58895499 + AluJb SINE Alu 9 302 -10 1368 247 97 70 chr3 168629079 168629410 -58895168 - Zaphod DNA AcHobo -148 3883 3563 1924 145 3 20 chr3 168629410 168629714 -58894864 - AluSx SINE Alu -13 299 1 1368 247 97 70 chr3 168629714 168630104 -58894474 - Zaphod DNA AcHobo -468 3563 3131 * 2296 266 66 24 chr3 168630099 168630795 -58893783 - Zaphod DNA AcHobo -3293 738 14 2066 116 3 3 chr3 168631141 168631448 -58893130 - AluSx SINE Alu 0 307 1 21 0 0 0 chr3 168631727 168631748 -58892830 + AT_rich Low_complexity Low_complexity 1 21 0 3332 275 89 45 chr3 168632742 168633223 -58891355 + L2 LINE L2 1564 2023 -1290 2361 84 0 0 chr3 168633223 168633521 -58891057 - AluSg SINE Alu -12 298 1 3332 275 89 45 chr3 168633521 168633842 -58890736 + L2 LINE L2 2023 2329 -984 519 274 0 0 chr3 168633842 168633955 -58890623 + MER81 DNA DNA 2 114 0 3332 275 89 45 chr3 168633955 168634826 -58889752 + L2 LINE L2 2329 3312 -1 485 143 0 11 chr3 168635891 168635982 -58888596 + (TTCC)n Simple_repeat Simple_repeat 2 91 0 516 229 0 0 chr3 168635987 168636096 -58888482 - FLAM_C SINE Alu -34 109 1 2093 74 0 57 chr3 168636358 168636654 -58887924 + AluY SINE Alu 2 280 -31 271 0 0 0 chr3 168636654 168636684 -58887894 + (CAAAA)n Simple_repeat Simple_repeat 1 85 0 1381 123 9 32 chr3 168636822 168637041 -58887537 + AluSg/x SINE Alu 83 296 -14 21 57 0 0 chr3 168637235 168637270 -58887308 + AT_rich Low_complexity Low_complexity 1 35 0 295 314 59 39 chr3 168637449 168637653 -58886925 + HAL1b LINE L1 399 1692 -808 774 293 68 20 chr3 168638259 168638801 -58885777 + L1M4 LINE L1 2175 2742 -3404 268 374 43 0 chr3 168639130 168639341 -58885237 - L2 LINE L2 -711 2603 2384 1175 165 75 125 chr3 168639632 168639953 -58884625 - AluJb SINE Alu -2 310 6 351 282 0 0 chr3 168639958 168640061 -58884517 + L1ME4a LINE L1 5628 5730 -391 1398 78 5 0 chr3 168640418 168640609 -58883969 + L1PA8 LINE L1 5978 6169 -3 398 265 76 0 chr3 168640838 168640970 -58883608 + L1ME4a LINE L1 5968 6109 -12 489 176 0 0 chr3 168641185 168641293 -58883285 + (TA)n Simple_repeat Simple_repeat 2 109 0 239 169 28 0 chr3 168641306 168641377 -58883201 - L1MCa LINE L1 -4362 2064 1992 1897 125 0 14 chr3 168641382 168641671 -58882907 - AluSx SINE Alu -27 285 1 726 326 78 63 chr3 168641972 168642907 -58881671 + HAL1b LINE L1 1 823 -525 358 256 59 88 chr3 168643075 168643313 -58881265 + L1MC4a LINE L1 6476 6706 -1102 393 22 0 0 chr3 168643382 168643405 -58881173 + (TCCCC)n Simple_repeat Simple_repeat 1 69 0 393 22 0 0 chr3 168643405 168643451 -58881127 + (TCCCC)n Simple_repeat Simple_repeat 5 50 0 22 56 0 0 chr3 168643745 168643781 -58880797 + AT_rich Low_complexity Low_complexity 1 36 0 5517 173 22 12 chr3 168643930 168645670 -58878908 - L1PA16 LINE L1 -17 7587 5832 2892 244 26 21 chr3 168645640 168646725 -58877853 - L1PA16 LINE L1 -4281 3303 2203 * 642 349 15 18 chr3 168647270 168647663 -58876915 - L1PA16 LINE L1 -7166 415 24 887 243 118 59 chr3 168647838 168648176 -58876402 - MLT1A1 LTR MaLR -2 363 6 1523 87 0 0 chr3 168648578 168648786 -58875792 - L1P4 LINE L1 -368 5800 5593 1240 184 17 117 chr3 168648901 168649304 -58875274 + MLT1A1 LTR MaLR 3 365 0 1464 195 104 30 chr3 168649736 168650074 -58874504 - MLT1A1 LTR MaLR 0 365 3 602 282 138 29 chr3 168650229 168650577 -58874001 - MLT1J LTR MaLR -3 508 123 1554 212 3 31 chr3 168650831 168651152 -58873426 - AluJb SINE Alu 0 312 1 293 253 13 0 chr3 168651298 168651377 -58873201 + (TA)n Simple_repeat Simple_repeat 2 81 0 344 284 7 28 chr3 168651927 168652068 -58872510 + (TATATG)n Simple_repeat Simple_repeat 4 141 0 693 284 9 26 chr3 168653032 168653264 -58871314 - MLT1K LTR MaLR -9 579 352 1452 199 14 0 chr3 168653295 168653572 -58871006 + AluJo SINE Alu 13 293 -19 1839 210 125 0 chr3 168653979 168654426 -58870152 + MLT1D LTR MaLR 3 505 0 273 180 33 0 chr3 168654485 168654546 -58870032 + MER53 DNA DNA 125 187 -2 513 283 6 29 chr3 168654854 168655027 -58869551 + MIR SINE MIR 94 262 0 246 315 56 0 chr3 168656070 168656159 -58868419 - MIR3 SINE MIR -17 191 98 28 29 0 0 chr3 168659651 168659686 -58864892 + AT_rich Low_complexity Low_complexity 1 35 0 2861 10 0 0 chr3 168660561 168660872 -58863706 + AluYa5 SINE Alu 1 311 0 280 385 73 43 chr3 168661255 168661322 -58863256 + L2 LINE L2 2602 2665 -649 1104 237 5 9 chr3 168661322 168661546 -58863032 - MER58A DNA MER1_type -1 223 1 280 385 73 43 chr3 168661546 168661805 -58862773 + L2 LINE L2 2665 2938 -376 323 301 52 44 chr3 168661863 168661999 -58862579 + L2 LINE L2 3168 3304 -9 180 326 31 62 chr3 168661996 168662125 -58862453 + L3 LINE CR1 1373 1497 -80 * 3400 273 98 78 chr3 168662405 168663968 -58860610 + L1ME1 LINE L1 39 1569 -4646 1389 163 63 9 chr3 168663968 168664287 -58860291 + L1MB4 LINE L1 5844 6179 -1 3400 273 98 78 chr3 168664287 168664514 -58860064 + L1ME1 LINE L1 1569 1790 -4425 1046 172 191 43 chr3 168664514 168664636 -58859942 + AluJo SINE Alu 1 104 -198 201 39 0 0 chr3 168664636 168664662 -58859916 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1046 172 191 43 chr3 168664662 168664795 -58859783 + AluJo SINE Alu 104 294 -8 3400 273 98 78 chr3 168664795 168664907 -58859671 + L1ME1 LINE L1 1790 1898 -4317 1887 151 7 0 chr3 168664907 168665198 -58859380 + AluJb SINE Alu 1 293 -19 3400 273 98 78 chr3 168665198 168667238 -58857340 + L1ME1 LINE L1 1898 4048 -2167 2251 195 35 2 chr3 168667244 168667649 -58856929 - MSTB LTR MaLR -5 421 4 8549 193 18 10 chr3 168667652 168669290 -58855288 - MSTB-int LTR MaLR 0 1651 1 1884 197 39 53 chr3 168669290 168669722 -58854856 - MSTB LTR MaLR 0 426 1 1812 336 105 24 chr3 168669722 168670157 -58854421 + L1ME1 LINE L1 4045 4443 -1772 2449 71 0 0 chr3 168670157 168670451 -58854127 + AluY SINE Alu 3 296 -15 1812 336 105 24 chr3 168670451 168671017 -58853561 + L1ME1 LINE L1 4443 5127 -1088 1215 144 87 94 chr3 168671019 168671173 -58853405 - MER46B DNA MER2_type -2495 236 208 1098 199 188 35 chr3 168671173 168671429 -58853149 - AluJo SINE Alu -7 295 1 1215 144 87 94 chr3 168671429 168671572 -58853006 - MER46B DNA MER2_type -2523 208 66 1019 281 13 16 chr3 168671595 168671908 -58852670 + L1ME1 LINE L1 5518 5829 -406 692 224 0 0 chr3 168671938 168672063 -58852515 + FRAM SINE Alu 33 157 -19 489 214 98 8 chr3 168672073 168672197 -58852381 + L1ME1 LINE L1 5804 5935 -300 2242 156 16 19 chr3 168672222 168672484 -58852094 + MER83B LTR ERV1 1 263 -115 2107 119 49 32 chr3 168672484 168672853 -58851725 - THE1C LTR MaLR 0 375 1 2242 156 16 19 chr3 168672853 168672969 -58851609 + MER83B LTR ERV1 263 378 0 2937 226 69 39 chr3 168672984 168673737 -58850841 + MER83B-int LTR ERV1 47 822 -4058 2558 157 19 7 chr3 168673736 168674164 -58850414 + MER83B-int LTR ERV1 1069 1501 -3379 * 9000 124 8 5 chr3 168674141 168675460 -58849118 + MER83B-int LTR ERV1 3547 4869 -11 1832 158 85 52 chr3 168675460 168675826 -58848752 + MER83B LTR ERV1 1 378 0 446 273 26 72 chr3 168675827 168676091 -58848487 + L1ME1 LINE L1 5981 6232 -3 187 200 0 44 chr3 168676099 168676144 -58848434 - L2 LINE L2 -78 3235 3193 1066 222 39 4 chr3 168676166 168676400 -58848178 - AluJo SINE Alu -43 269 28 21 36 0 0 chr3 168677286 168677314 -58847264 + AT_rich Low_complexity Low_complexity 1 28 0 433 282 38 0 chr3 168681005 168681136 -58843442 + MIR SINE MIR 49 184 -78 1485 126 71 4 chr3 168682721 168682975 -58841603 + L1PA14 LINE L1 5889 6159 -2 951 183 0 34 chr3 168683660 168683835 -58840743 - AluJb SINE Alu -3 309 141 802 211 12 12 chr3 168684046 168684207 -58840371 - AluJb SINE Alu -12 300 140 570 306 88 5 chr3 168684212 168684405 -58840173 - MIR SINE MIR -49 213 5 262 342 86 0 chr3 168685562 168685679 -58838899 - MLT1J LTR MaLR -193 318 192 1182 320 34 8 chr3 168686179 168686567 -58838011 + LTR16A LTR ERVL 52 449 -1 478 311 18 46 chr3 168686639 168686995 -58837583 - MER52A LTR ERV1 0 1755 1289 1258 197 310 34 chr3 168687253 168687695 -58836883 - MER52A LTR ERV1 -524 1231 668 26062 100 10 5 chr3 168687699 168691211 -58833367 - MER52A-int LTR ERV1 -6 7085 669 5158 196 28 45 chr3 168691201 168693075 -58831503 - MER52A-int LTR ERV1 -1029 2059 169 * 506 299 6 6 chr3 168693146 168693303 -58831275 - MER52A LTR ERV1 0 1755 1599 425 298 33 77 chr3 168693304 168693485 -58831093 - MER52A LTR ERV1 -276 1479 1307 901 208 51 99 chr3 168693819 168694270 -58830308 - MER52A LTR ERV1 -141 890 264 1866 160 0 0 chr3 168694272 168694554 -58830024 + AluJo SINE Alu 31 312 0 245 243 37 88 chr3 168695122 168695258 -58829320 + MLT2E LTR ERVL 500 628 0 395 224 0 41 chr3 168697824 168697922 -58826656 + MIR SINE MIR 59 152 -110 392 245 173 14 chr3 168698687 168698826 -58825752 - MIR SINE MIR -55 207 47 387 0 0 0 chr3 168698837 168698880 -58825698 + (TG)n Simple_repeat Simple_repeat 2 44 0 2320 47 13 34 chr3 168698880 168699178 -58825400 - AluY SINE Alu -19 292 1 183 156 0 0 chr3 168699398 168699430 -58825148 + CT-rich Low_complexity Low_complexity 4 35 0 1174 262 89 13 chr3 168699471 168699853 -58824725 - LTR16C LTR ERVL -10 481 71 34 42 0 0 chr3 168701044 168701092 -58823486 + AT_rich Low_complexity Low_complexity 1 48 0 303 216 68 0 chr3 168701361 168701435 -58823143 + MLT1J2 LTR MaLR 69 147 -303 1471 66 10 0 chr3 168751801 168751997 -58772581 - L1MA2 LINE L1 -320 5984 5787 1950 124 23 3 chr3 168752944 168753251 -58771327 + AluSq SINE Alu 1 313 0 194 324 15 0 chr3 168753789 168753857 -58770721 - L3b LINE CR1 -219 1364 1296 364 317 50 0 chr3 168755109 168755210 -58769368 + L2 LINE L2 3199 3304 -9 1636 181 7 7 chr3 168755445 168755727 -58768851 + AluJo SINE Alu 1 282 -30 243 0 0 0 chr3 168755730 168755757 -58768821 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 681 264 41 114 chr3 168755828 168756256 -58768322 + MLT1G LTR MaLR 3 413 -147 727 271 22 27 chr3 168756952 168757052 -58767526 + MER58A DNA MER1_type 1 100 -2320 2050 96 0 0 chr3 168757052 168757323 -58767255 - AluSx SINE Alu -18 294 24 727 271 22 27 chr3 168757323 168757447 -58767131 + MER58A DNA MER1_type 100 224 0 361 362 101 14 chr3 168757600 168757876 -58766702 - L1M4 LINE L1 -3699 2447 2148 284 143 18 0 chr3 168758637 168758693 -58765885 + (TA)n Simple_repeat Simple_repeat 1 57 0 468 0 0 0 chr3 168758907 168758959 -58765619 + (CA)n Simple_repeat Simple_repeat 2 53 0 239 246 0 0 chr3 168758973 168759034 -58765544 - MLT1L LTR MaLR -4 611 551 618 214 151 0 chr3 168759043 168759202 -58765376 + MER5A DNA MER1_type 4 186 -3 302 301 163 30 chr3 168759748 168759951 -58764627 + L1MC/D LINE L1 4536 4765 -1381 617 269 0 7 chr3 168759963 168760112 -58764466 - MLT1A2 LTR MaLR 0 374 227 383 269 47 78 chr3 168760113 168760369 -58764209 + L1MC/D LINE L1 5363 5610 -2198 242 283 0 0 chr3 168760370 168760430 -58764148 + (CATA)n Simple_repeat Simple_repeat 2 61 0 542 278 31 31 chr3 168760430 168760657 -58763921 + L1MC/D LINE L1 5598 5824 -1984 348 336 52 16 chr3 168760668 168760982 -58763596 - L2 LINE L2 -5 3308 2930 28 91 0 0 chr3 168761976 168762053 -58762525 + AT_rich Low_complexity Low_complexity 1 77 0 258 252 160 0 chr3 168762054 168762173 -58762405 - L1MC/D LINE L1 -2056 5752 5615 3142 201 123 7 chr3 168762185 168762895 -58761683 + L1MD2 LINE L1 5567 6358 -1 499 288 79 13 chr3 168762906 168763263 -58761315 - L1ME LINE L1 -486 5684 5282 2264 95 0 7 chr3 168763269 168763612 -58760966 - AluSx SINE Alu 0 312 1 525 279 97 59 chr3 168763799 168764222 -58760356 - L1ME LINE L1 -1157 4989 4551 2439 121 14 3 chr3 168764349 168764713 -58759865 + THE1C LTR MaLR 8 375 0 499 288 70 18 chr3 168765166 168765502 -58759076 - L1M4 LINE L1 -1592 4554 4201 656 301 8 52 chr3 168765671 168765815 -58758763 - MIR SINE MIR -1 261 131 2132 120 0 19 chr3 168765815 168766131 -58758447 + AluSx SINE Alu 1 310 -2 656 301 8 52 chr3 168766131 168766235 -58758343 - MIR SINE MIR -131 131 24 265 291 94 0 chr3 168766439 168766556 -58758022 + MLT1L LTR MaLR 483 610 -5 373 352 24 44 chr3 168766595 168766893 -58757685 - L2 LINE L2 -848 2466 2175 200 311 33 0 chr3 168767048 168767109 -58757469 + L2 LINE L2 2726 2788 -526 408 351 81 17 chr3 168767542 168767815 -58756763 - L2 LINE L2 -1414 1900 1599 2151 104 0 13 chr3 168767815 168768124 -58756454 + AluSc SINE Alu 1 305 -4 408 351 81 17 chr3 168768124 168768198 -58756380 - L2 LINE L2 -1715 1599 1531 1366 204 55 59 chr3 168772604 168773016 -58751562 - Tigger7 DNA MER2_type -246 2341 1 1848 160 3 0 chr3 168773396 168773689 -58750889 + AluSx SINE Alu 1 294 -18 205 51 51 0 chr3 168773695 168773734 -58750844 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 194 328 16 0 chr3 168774559 168774620 -58749958 + L2 LINE L2 3186 3247 -25 2296 105 0 0 chr3 168775130 168775426 -58749152 + AluSg SINE Alu 1 296 -14 450 225 57 119 chr3 168776840 168776972 -58747606 - LTR37A LTR ERV1 0 426 287 2818 3 0 0 chr3 168776972 168777279 -58747299 - AluYa5 SINE Alu -4 307 1 450 225 57 119 chr3 168777279 168777515 -58747063 - LTR37A LTR ERV1 -139 287 81 1719 175 3 3 chr3 168777614 168777911 -58746667 - AluJo SINE Alu -15 297 1 1047 225 48 122 chr3 168777923 168778664 -58745914 - MER31-int LTR ERV1 -712 5507 3569 267 352 0 11 chr3 168779244 168779335 -58745243 - MER5B DNA MER1_type -87 91 2 592 206 5 3 chr3 168779560 168779748 -58744830 - MER82 DNA MER2_type 0 653 409 370 179 253 11 chr3 168779753 168779848 -58744730 - MER20 DNA MER1_type -101 118 1 461 278 113 16 chr3 168779848 168780042 -58744536 + MIR SINE MIR 38 250 -12 21 36 0 0 chr3 168781055 168781083 -58743495 + AT_rich Low_complexity Low_complexity 1 28 0 230 259 65 83 chr3 168781290 168781398 -58743180 - L2 LINE L2 -7 3306 3201 1873 129 18 45 chr3 168781442 168781775 -58742803 + MER4A LTR ERV1 1 324 -340 505 180 187 40 chr3 168781846 168781996 -58742582 + MER4C LTR ERV1 294 465 0 257 352 70 27 chr3 168782176 168782477 -58742101 - L2 LINE L2 -341 2973 2660 1451 237 99 9 chr3 168782480 168782906 -58741672 + MLT2B2 LTR ERVL 1 464 -51 224 232 10 0 chr3 168782908 168783007 -58741571 + (TA)n Simple_repeat Simple_repeat 1 100 0 748 340 185 22 chr3 168783026 168783873 -58740705 - L2 LINE L2 -639 2675 1683 4545 66 0 0 chr3 168783873 168784448 -58740130 + L1PA7 LINE L1 5572 6146 -8 748 340 185 22 chr3 168784448 168784463 -58740115 - L2 LINE L2 -1631 1683 1672 492 226 24 30 chr3 168784644 168784812 -58739766 + MER69 DNA AcHobo 2359 2525 -1 232 149 15 15 chr3 168785804 168785871 -58738707 + (TCTA)n Simple_repeat Simple_repeat 3 69 0 180 381 48 0 chr3 168785991 168786054 -58738524 + L2 LINE L2 3229 3294 -19 2328 97 0 0 chr3 168786070 168786368 -58738210 - AluSc SINE Alu -11 298 1 318 214 113 77 chr3 168786666 168786834 -58737744 - MLT1K LTR MaLR 0 588 415 1992 129 7 0 chr3 168788328 168788622 -58735956 + AluSq SINE Alu 1 292 -359 36 0 0 0 chr3 168788622 168788658 -58735920 + AT_rich Low_complexity Low_complexity 1 36 0 2018 81 0 7 chr3 168788664 168788948 -58735630 + L1MA1 LINE L1 6017 6298 -4 1992 129 7 0 chr3 168788948 168788977 -58735601 + AluSq SINE Alu 296 651 0 207 0 0 0 chr3 168789025 168789048 -58735530 + (T)n Simple_repeat Simple_repeat 1 23 0 264 30 0 0 chr3 168789362 168789395 -58735183 + (CA)n Simple_repeat Simple_repeat 2 34 0 26 30 0 0 chr3 168789543 168789576 -58735002 + AT_rich Low_complexity Low_complexity 1 33 0 33 25 0 0 chr3 168790695 168790735 -58733843 + AT_rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr3 168790913 168790943 -58733635 + AT_rich Low_complexity Low_complexity 1 30 0 1249 220 40 7 chr3 168791190 168791467 -58733111 - AluJb SINE Alu -23 289 4 31 44 0 0 chr3 168791570 168791615 -58732963 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr3 168792067 168792088 -58732490 + AT_rich Low_complexity Low_complexity 1 21 0 1580 203 4 0 chr3 168792151 168792422 -58732156 - AluJb SINE Alu -40 272 1 452 279 89 81 chr3 168792555 168792971 -58731607 + L1ME LINE L1 5269 5692 -429 5213 111 274 91 chr3 168792975 168794409 -58730169 - pTR5 LTR ERV1 0 2438 743 21 107 0 0 chr3 168795251 168795335 -58729243 + AT_rich Low_complexity Low_complexity 1 84 0 228 356 7 52 chr3 168795726 168795861 -58728717 - L2 LINE L2 -25 3288 3160 502 286 74 52 chr3 168796672 168796903 -58727675 + L2 LINE L2 3075 3310 -3 1159 234 60 0 chr3 168797548 168797813 -58726765 - L1MD3 LINE L1 -1001 6994 6714 240 288 120 23 chr3 168797841 168798140 -58726438 - L1MEc LINE L1 -4094 2216 1889 449 269 119 61 chr3 168798458 168798839 -58725739 - L1MEc LINE L1 -4444 1685 1263 300 53 0 0 chr3 168798839 168798877 -58725701 + (TG)n Simple_repeat Simple_repeat 1 38 0 449 269 119 61 chr3 168798877 168799023 -58725555 - L1MEc LINE L1 -4866 1263 1127 189 0 0 0 chr3 168799027 168799048 -58725530 + (TC)n Simple_repeat Simple_repeat 2 22 0 482 312 45 53 chr3 168799060 168799438 -58725140 - L1MEc LINE L1 -5012 1107 733 351 0 0 0 chr3 168800135 168800174 -58724404 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr3 168800381 168800403 -58724175 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 168801828 168801850 -58722728 + AT_rich Low_complexity Low_complexity 1 22 0 28 29 0 0 chr3 168801891 168801926 -58722652 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 168802112 168802134 -58722444 + AT_rich Low_complexity Low_complexity 1 22 0 278 49 0 24 chr3 168803562 168803603 -58720975 + (TA)n Simple_repeat Simple_repeat 1 40 0 23 0 0 0 chr3 168803905 168803928 -58720650 + AT_rich Low_complexity Low_complexity 1 23 0 468 45 134 0 chr3 168803974 168804041 -58720537 - MADE1 DNA Mariner 0 80 5 399 155 41 0 chr3 168804671 168804768 -58719810 + A-rich Low_complexity Low_complexity 4 104 0 27 29 0 0 chr3 168805373 168805407 -58719171 + AT_rich Low_complexity Low_complexity 1 34 0 242 232 0 0 chr3 168806200 168806256 -58718322 + L1MC5 LINE L1 7610 7665 -296 2198 225 50 18 chr3 168806361 168806858 -58717720 + MLT1F1 LTR MaLR 1 513 -54 436 193 35 23 chr3 168806865 168807036 -58717542 + CT-rich Low_complexity Low_complexity 4 176 0 35 54 0 0 chr3 168807145 168807201 -58717377 + AT_rich Low_complexity Low_complexity 1 56 0 1675 169 32 0 chr3 168808105 168808231 -58716347 + AluSx SINE Alu 1 121 -191 214 50 50 0 chr3 168808231 168808271 -58716307 + (CAAAA)n Simple_repeat Simple_repeat 5 46 0 1675 169 32 0 chr3 168808271 168808423 -58716155 + AluSx SINE Alu 121 288 -24 26 0 0 0 chr3 168808423 168808449 -58716129 + AT_rich Low_complexity Low_complexity 1 26 0 189 294 0 0 chr3 168808544 168808595 -58715983 - L2 LINE L2 -224 3048 2998 21 0 0 0 chr3 168810545 168810566 -58714012 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 168810748 168810769 -58713809 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 168811082 168811103 -58713475 + AT_rich Low_complexity Low_complexity 1 21 0 292 404 15 0 chr3 168811541 168811677 -58712901 + MIR3 SINE MIR 54 191 -17 2922 252 53 4 chr3 168812921 168813826 -58710752 + L1 LINE L1 3213 4161 -1985 11723 196 21 49 chr3 168813833 168814959 -58709619 + L1MA4A LINE L1 753 1909 -5096 1990 127 0 3 chr3 168814959 168815269 -58709309 + AluSg SINE Alu 1 309 0 11723 196 21 49 chr3 168815269 168818847 -58705731 + L1MA4A LINE L1 1909 5196 -1809 2011 139 3 0 chr3 168818847 168819135 -58705443 + AluSx SINE Alu 9 297 -15 11723 196 21 49 chr3 168819135 168820897 -58703681 + L1MA4A LINE L1 5196 7005 0 23 33 0 0 chr3 168820918 168820948 -58703630 + AT_rich Low_complexity Low_complexity 1 30 0 236 254 156 49 chr3 168821062 168821184 -58703394 + MIR SINE MIR 23 157 -105 2114 123 10 3 chr3 168821277 168821587 -58702991 - AluSx SINE Alu 0 312 1 391 21 0 0 chr3 168822337 168822384 -58702194 - MADE1 DNA Mariner -33 47 1 2068 189 41 7 chr3 168824031 168824443 -58700135 - MSTB LTR MaLR 0 426 1 1574 229 15 42 chr3 168824463 168824948 -58699630 + MLT1B LTR MaLR 1 467 0 210 167 0 0 chr3 168825913 168825949 -58698629 + A-rich Low_complexity Low_complexity 1 36 0 221 299 46 0 chr3 168826573 168826660 -58697918 - L2 LINE L2 -532 2782 2692 192 296 14 56 chr3 168827195 168827266 -58697312 + L3 LINE CR1 1509 1576 -1 213 163 23 0 chr3 168827593 168827636 -58696942 + (TA)n Simple_repeat Simple_repeat 1 44 0 201 74 0 0 chr3 168828942 168828969 -58695609 + (CA)n Simple_repeat Simple_repeat 2 28 0 23 54 0 0 chr3 168829112 168829149 -58695429 + AT_rich Low_complexity Low_complexity 1 37 0 393 228 0 94 chr3 168829186 168829313 -58695265 - MLT1I LTR MaLR 0 409 295 896 248 102 28 chr3 168829314 168829510 -58695068 - MLT1B LTR MaLR 0 390 210 192 40 0 0 chr3 168829510 168829535 -58695043 + (GA)n Simple_repeat Simple_repeat 2 26 0 896 248 102 28 chr3 168829535 168829701 -58694877 - MLT1B LTR MaLR -180 210 1 22 0 0 0 chr3 168830390 168830412 -58694166 + AT_rich Low_complexity Low_complexity 1 22 0 1543 79 5 0 chr3 168832051 168832265 -58692313 - L1PA8 LINE L1 0 6172 5958 956 282 97 21 chr3 168832433 168832866 -58691712 + Charlie7 DNA MER1_type 5 470 -2142 879 206 38 0 chr3 168832851 168833035 -58691543 + Charlie7 DNA MER1_type 2084 2274 -338 * 222 333 0 14 chr3 168834568 168834637 -58689941 + L2 LINE L2 3241 3308 -5 26 30 0 0 chr3 168835361 168835394 -58689184 + AT_rich Low_complexity Low_complexity 1 33 0 189 74 0 0 chr3 168835902 168835929 -58688649 + (GA)n Simple_repeat Simple_repeat 2 28 0 23 33 0 0 chr3 168837549 168837579 -58686999 + AT_rich Low_complexity Low_complexity 1 30 0 315 0 0 0 chr3 168839078 168839113 -58685465 + (TAGA)n Simple_repeat Simple_repeat 4 38 0 1862 161 27 15 chr3 168840182 168840512 -58684066 - MER46B DNA MER2_type 0 236 28 552 311 115 4 chr3 168840638 168840873 -58683705 + MIR SINE MIR 2 262 0 31 58 0 0 chr3 168841172 168841224 -58683354 + AT_rich Low_complexity Low_complexity 1 52 0 1871 177 9 12 chr3 168841804 168842131 -58682447 - MER2 DNA MER2_type -19 326 1 1210 238 111 13 chr3 168842131 168842525 -58682053 - MLT1C LTR MaLR -32 435 3 289 288 0 0 chr3 168842528 168842594 -58681984 - L2 LINE L2 -28 3285 3220 1095 268 53 20 chr3 168843367 168843856 -58680722 - L1MEc LINE L1 -3570 2576 2110 4129 229 52 41 chr3 168843870 168845772 -58678806 - L1MD1 LINE L1 0 6636 4706 1959 70 4 0 chr3 168845772 168846028 -58678550 - L1PA3 LINE L1 -3 6152 5896 4129 229 52 41 chr3 168846028 168846171 -58678407 - L1MD1 LINE L1 -1930 4706 4566 234 0 0 0 chr3 168846177 168846203 -58678375 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1446 129 4 0 chr3 168846205 168846430 -58678148 - AluY SINE Alu -9 302 77 474 63 0 89 chr3 168846430 168846509 -58678069 + Alu SINE Alu 7 78 -232 4238 219 106 39 chr3 168846517 168849381 -58675197 - L1MD1 LINE L1 -2012 4528 1341 2115 224 90 43 chr3 168849452 168850241 -58674337 + LTR1B LTR ERV1 1 826 0 354 292 60 42 chr3 168850287 168850455 -58674123 - L1M4 LINE L1 -1844 4302 4132 546 138 32 81 chr3 168851021 168851144 -58673434 - L1MD1 LINE L1 0 6242 6126 257 302 113 9 chr3 168851209 168851315 -58673263 - L3 LINE CR1 -315 1262 1146 6088 197 37 30 chr3 168851904 168854165 -58670413 + L1MC1 LINE L1 4045 6333 0 24 0 0 0 chr3 168854577 168854601 -58669977 + AT_rich Low_complexity Low_complexity 1 24 0 26 0 0 0 chr3 168856645 168856671 -58667907 + AT_rich Low_complexity Low_complexity 1 26 0 351 314 41 41 chr3 168857523 168857838 -58666740 + L1ME LINE L1 5492 5806 -315 23 33 0 0 chr3 168857872 168857902 -58666676 + AT_rich Low_complexity Low_complexity 1 30 0 635 289 89 58 chr3 168858062 168858615 -58665963 + L1MC4a LINE L1 5267 5836 -1972 2104 89 0 7 chr3 168858646 168858970 -58665608 - AluSc SINE Alu 0 323 2 33 66 0 0 chr3 168859405 168859466 -58665112 + AT_rich Low_complexity Low_complexity 1 61 0 2265 97 0 0 chr3 168859546 168859845 -58664733 - AluY SINE Alu -12 299 1 26 30 0 0 chr3 168860047 168860080 -58664498 + AT_rich Low_complexity Low_complexity 1 33 0 207 69 0 0 chr3 168860125 168860154 -58664424 + (TTTTA)n Simple_repeat Simple_repeat 3 31 0 24 0 0 0 chr3 168860301 168860325 -58664253 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr3 168861273 168861308 -58663270 + AT_rich Low_complexity Low_complexity 1 35 0 2519 56 0 0 chr3 168862065 168862371 -58662207 - AluY SINE Alu -5 306 1 246 381 41 10 chr3 168862496 168862690 -58661888 - MARNA DNA Mariner -371 215 16 407 227 36 27 chr3 168862931 168863041 -58661537 - MARNA DNA Mariner -172 414 304 23 33 0 0 chr3 168863242 168863272 -58661306 + AT_rich Low_complexity Low_complexity 1 30 0 675 343 109 18 chr3 168863878 168864444 -58660134 - L2 LINE L2 -829 2485 1868 450 329 64 27 chr3 168865141 168865360 -58659218 - MIR SINE MIR -16 246 20 198 0 0 0 chr3 168865910 168865932 -58658646 + (A)n Simple_repeat Simple_repeat 1 22 0 2244 125 3 0 chr3 168866323 168866634 -58657944 + AluSq SINE Alu 1 312 -1 26 50 0 0 chr3 168866635 168866675 -58657903 + AT_rich Low_complexity Low_complexity 1 40 0 949 217 19 38 chr3 168868912 168869179 -58655399 - MER63 DNA MER1_type 0 1061 800 237 280 13 27 chr3 168869320 168869395 -58655183 - L2 LINE L2 -1 3312 3239 467 225 171 0 chr3 168869527 168869656 -58654922 - MER63 DNA MER1_type -231 829 679 214 298 0 0 chr3 168869714 168869771 -58654807 - MIR SINE MIR -66 142 86 25 51 0 0 chr3 168870429 168870468 -58654110 + AT_rich Low_complexity Low_complexity 1 39 0 40 73 0 0 chr3 168872065 168872147 -58652431 + AT_rich Low_complexity Low_complexity 1 82 0 340 342 25 8 chr3 168873243 168873363 -58651215 - MIR3 SINE MIR -18 190 69 330 87 0 0 chr3 168873533 168873579 -58650999 + (TG)n Simple_repeat Simple_repeat 1 46 0 363 96 0 0 chr3 168879755 168879807 -58644771 + (CA)n Simple_repeat Simple_repeat 2 53 0 203 184 26 26 chr3 168880276 168880352 -58644226 + (TA)n Simple_repeat Simple_repeat 2 77 0 21 0 0 0 chr3 168880728 168880749 -58643829 + AT_rich Low_complexity Low_complexity 1 21 0 560 88 0 0 chr3 168880911 168880991 -58643587 + MADE1 DNA Mariner 1 80 0 25 0 0 0 chr3 168881121 168881146 -58643432 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr3 168883171 168883193 -58641385 + AT_rich Low_complexity Low_complexity 1 22 0 432 82 0 0 chr3 168883407 168883468 -58641110 + (CA)n Simple_repeat Simple_repeat 1 61 0 198 324 29 19 chr3 168886674 168886779 -58637799 + MIR SINE MIR 49 154 -108 472 222 0 10 chr3 168886909 168887008 -58637570 + MIR SINE MIR 75 172 -90 393 253 62 27 chr3 168887579 168887725 -58636853 + Charlie8 DNA MER1_type 36 186 -2231 26 30 0 0 chr3 168888454 168888487 -58636091 + AT_rich Low_complexity Low_complexity 1 33 0 22 56 0 0 chr3 168889109 168889145 -58635433 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr3 168889307 168889327 -58635251 + (T)n Simple_repeat Simple_repeat 1 20 0 234 313 62 35 chr3 168889764 168889908 -58634670 - L3 LINE CR1 -7 1570 1423 302 347 120 71 chr3 168890601 168891025 -58633553 - L2 LINE L2 -2 3270 2826 377 271 77 71 chr3 168891316 168891492 -58633086 + L1ME4a LINE L1 5754 5928 -193 2304 98 0 16 chr3 168891492 168891807 -58632771 - AluSx SINE Alu -2 310 1 377 271 77 71 chr3 168891807 168891995 -58632583 + L1ME4a LINE L1 5928 6120 -1 266 172 0 0 chr3 168892652 168892710 -58631868 + L1MC4 LINE L1 6646 6703 -1339 189 0 0 0 chr3 168893427 168893448 -58631130 + (TTG)n Simple_repeat Simple_repeat 1 21 0 258 171 61 0 chr3 168893707 168893789 -58630789 + (TA)n Simple_repeat Simple_repeat 2 88 0 358 360 7 7 chr3 168895404 168895540 -58629038 + MIR3 SINE MIR 62 197 -11 194 61 0 30 chr3 168896128 168896161 -58628417 + (TAAAAA)n Simple_repeat Simple_repeat 4 35 0 195 42 0 0 chr3 168896475 168896499 -58628079 + (T)n Simple_repeat Simple_repeat 1 24 0 360 338 59 7 chr3 168896759 168896895 -58627683 - MIR3 SINE MIR -35 173 31 272 300 94 18 chr3 168898047 168898217 -58626361 + L1MC/D LINE L1 4737 4919 -1227 248 154 15 31 chr3 168898921 168898986 -58625592 + (TATAA)n Simple_repeat Simple_repeat 1 64 0 309 294 22 11 chr3 168898986 168899078 -58625500 + MLT1F1-int LTR MaLR 1017 1109 -262 788 97 81 0 chr3 168899131 168899255 -58625323 - L1MA1 LINE L1 0 6302 6169 3962 144 7 60 chr3 168899282 168900026 -58624552 - Tigger3b DNA MER2_type -526 705 2 242 95 24 0 chr3 168901762 168901804 -58622774 + (TC)n Simple_repeat Simple_repeat 2 44 0 194 229 0 16 chr3 168902974 168903035 -58621543 + CT-rich Low_complexity Low_complexity 3 62 0 1769 217 162 4 chr3 168903080 168903568 -58621010 + MLT1F1 LTR MaLR 3 567 0 2272 78 0 3 chr3 168903684 168903979 -58620599 + AluSc SINE Alu 1 294 -15 2177 129 3 0 chr3 168904015 168904326 -58620252 - AluSx SINE Alu 0 312 1 475 315 99 24 chr3 168904361 168904703 -58619875 - L2 LINE L2 -188 3125 2770 26 50 0 0 chr3 168906720 168906760 -58617818 + AT_rich Low_complexity Low_complexity 1 40 0 1413 192 92 0 chr3 168908138 168908409 -58616169 - AluJb SINE Alu -16 296 1 180 303 144 8 chr3 168908427 168908559 -58616019 + L2 LINE L2 3114 3263 -50 653 115 19 19 chr3 168909782 168909886 -58614692 + FRAM SINE Alu 60 163 -13 547 321 0 7 chr3 168910099 168910239 -58614339 - L2 LINE L2 0 3272 3134 760 267 23 27 chr3 168910547 168910768 -58613810 + MER58A DNA MER1_type 4 223 -1 340 319 157 28 chr3 168911054 168911502 -58613076 + L1MC/D LINE L1 5263 5760 -554 47 19 0 0 chr3 168911612 168911666 -58612912 + AT_rich Low_complexity Low_complexity 1 54 0 8711 50 7 0 chr3 168911841 168912905 -58611673 + MER11C LTR ERVK 1 1071 0 713 313 138 32 chr3 168913005 168913599 -58610979 - L2 LINE L2 -726 2588 1932 569 200 44 0 chr3 168913726 168913976 -58610602 + L1MA7 LINE L1 5925 6291 0 388 352 103 26 chr3 168914454 168914727 -58609851 - L2 LINE L2 -2791 523 230 221 311 136 0 chr3 168914981 168915084 -58609494 - MIR SINE MIR -55 207 91 742 269 103 26 chr3 168915802 168916120 -58608458 + L1P3 LINE L1 5456 5798 -356 3880 237 54 57 chr3 168916160 168918738 -58605840 + L1M2c LINE L1 2047 4460 -3105 * 4564 152 37 165 chr3 168918737 168919795 -58604783 + L1M2c LINE L1 4960 5765 -1800 1531 97 28 24 chr3 168919795 168920043 -58604535 - L1MA1 LINE L1 -7 6295 6047 4564 152 37 165 chr3 168920043 168920508 -58604070 + L1M2c LINE L1 5765 6288 -1277 716 273 94 26 chr3 168920518 168920976 -58603602 + HAL1 LINE L1 1039 1527 -980 276 30 0 0 chr3 168921028 168921061 -58603517 + (ATG)n Simple_repeat Simple_repeat 3 35 0 740 263 114 29 chr3 168921123 168921534 -58603044 + HAL1 LINE L1 1721 2166 -341 334 279 24 114 chr3 168921683 168921937 -58602641 + HAL1 LINE L1 2263 2493 -14 22 0 0 0 chr3 168922378 168922400 -58602178 + AT_rich Low_complexity Low_complexity 1 22 0 402 376 11 11 chr3 168922471 168922660 -58601918 + MIR SINE MIR 2 190 -72 31 82 0 0 chr3 168923177 168923250 -58601328 + AT_rich Low_complexity Low_complexity 1 73 0 2620 178 50 61 chr3 168923299 168923905 -58600673 - MER7C DNA MER2_type 0 602 4 230 258 0 0 chr3 168924006 168924068 -58600510 + (TA)n Simple_repeat Simple_repeat 2 63 0 1871 157 10 3 chr3 168924340 168924645 -58599933 + AluJb SINE Alu 1 307 -5 22 0 0 0 chr3 168924645 168924667 -58599911 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 168925008 168925031 -58599547 + AT_rich Low_complexity Low_complexity 1 23 0 548 296 116 28 chr3 168925099 168925487 -58599091 + L1ME LINE L1 5311 5732 -389 221 0 0 33 chr3 168925742 168925772 -58598806 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 2161 87 29 26 chr3 168925997 168926308 -58598270 - AluSx SINE Alu 0 312 1 1250 241 81 7 chr3 168928134 168928429 -58596149 + MLT1D LTR MaLR 1 317 -188 1958 170 43 29 chr3 168928434 168928988 -58595590 + MLT2A2 LTR ERVL 1 554 0 39021 106 19 7 chr3 168928988 168933442 -58591136 + HERVL-A2-A2 LTR ERVL 1 4538 -1116 2190 122 0 0 chr3 168933442 168933753 -58590825 + AluY SINE Alu 1 311 0 39021 106 19 7 chr3 168933753 168934884 -58589694 + HERVL-A2-A2 LTR ERVL 4538 5654 0 1979 158 60 31 chr3 168934884 168935429 -58589149 + MLT2A2 LTR ERVL 1 554 0 805 224 28 6 chr3 168935432 168935611 -58588967 + MLT1D LTR MaLR 321 503 -2 1002 276 40 28 chr3 168935659 168935985 -58588593 - L2 LINE L2 -583 2731 2402 40 67 0 0 chr3 168938299 168938374 -58586204 + AT_rich Low_complexity Low_complexity 1 75 0 227 254 0 34 chr3 168938701 168938760 -58585818 + T-rich Low_complexity Low_complexity 4 60 0 418 318 30 47 chr3 168938804 168939100 -58585478 - L1ME LINE L1 -529 5641 5351 241 260 0 14 chr3 168939914 168939987 -58584591 - MIR SINE MIR -25 237 166 617 287 81 104 chr3 168941432 168942231 -58582347 - L2 LINE L2 -1 3312 2545 1290 134 27 18 chr3 168942231 168942455 -58582123 + L1PA10 LINE L1 5940 6165 -3 617 287 81 104 chr3 168942455 168942698 -58581880 - L2 LINE L2 -768 2545 2298 25 31 0 0 chr3 168942812 168942844 -58581734 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr3 168943201 168943225 -58581353 + AT_rich Low_complexity Low_complexity 1 24 0 283 365 25 68 chr3 168943308 168943629 -58580949 + L2 LINE L2 2608 2914 -400 253 308 108 25 chr3 168943693 168943813 -58580765 - L2 LINE L2 0 3313 3184 21 57 0 0 chr3 168943831 168943866 -58580712 + AT_rich Low_complexity Low_complexity 1 35 0 674 317 93 52 chr3 168943866 168944377 -58580201 - L2 LINE L2 -15 3298 2768 1584 297 148 24 chr3 168944404 168945147 -58579431 - L2 LINE L2 -525 2789 1955 1024 239 133 17 chr3 168945675 168946089 -58578489 - L1ME3A LINE L1 -80 6090 5629 1379 267 62 32 chr3 168946092 168946895 -58577683 - L1ME3A LINE L1 -623 5539 4696 270 0 0 0 chr3 168946895 168946925 -58577653 + (TG)n Simple_repeat Simple_repeat 1 30 0 1379 267 62 32 chr3 168946925 168947042 -58577536 - L1ME3A LINE L1 -1466 4696 4584 774 241 53 43 chr3 168947104 168947291 -58577287 - MER5A DNA MER1_type 0 189 1 24 32 0 0 chr3 168947751 168947782 -58576796 + AT_rich Low_complexity Low_complexity 1 31 0 23 0 0 0 chr3 168947861 168947884 -58576694 + AT_rich Low_complexity Low_complexity 1 23 0 267 306 121 8 chr3 168948326 168948450 -58576128 - MIR3 SINE MIR -38 170 33 3972 233 99 47 chr3 168950963 168951947 -58572631 + Zaphod DNA AcHobo 2369 3467 -564 1722 225 14 11 chr3 168951947 168952311 -58572267 - MLT1A1 LTR MaLR 0 365 1 3972 233 99 47 chr3 168952311 168952894 -58571684 + Zaphod DNA AcHobo 3467 4018 -13 346 345 170 25 chr3 168952940 168953084 -58571494 + L2 LINE L2 2895 3017 -296 1053 170 63 19 chr3 168953084 168953290 -58571288 - MER20 DNA MER1_type -4 215 1 346 345 170 25 chr3 168953290 168953510 -58571068 + L2 LINE L2 3017 3312 -1 2249 113 0 0 chr3 168953834 168954134 -58570444 - AluSx SINE Alu -12 300 1 444 198 160 0 chr3 168954967 168955073 -58569505 + MLT1E1 LTR MaLR 532 654 0 310 246 281 6 chr3 168955527 168955695 -58568883 - MIR SINE MIR -33 229 17 420 341 76 5 chr3 168956226 168956449 -58568129 - MIR SINE MIR -21 241 3 869 205 77 38 chr3 168956597 168956962 -58567616 + MLT1C LTR MaLR 1 467 0 334 265 72 0 chr3 168957075 168957158 -58567420 - L1MC4 LINE L1 -1341 6701 6613 209 191 38 0 chr3 168957158 168957263 -58567315 + (TA)n Simple_repeat Simple_repeat 1 109 0 217 244 174 0 chr3 168957706 168957792 -58566786 + MIR SINE MIR 106 206 -56 959 161 88 0 chr3 168959078 168959270 -58565308 - MER3 DNA MER1_type 0 209 1 261 0 0 0 chr3 168959696 168959725 -58564853 + (CA)n Simple_repeat Simple_repeat 2 30 0 228 86 0 0 chr3 168960024 168960059 -58564519 + (TG)n Simple_repeat Simple_repeat 2 36 0 245 194 42 42 chr3 168962751 168962823 -58561755 + L1MC4 LINE L1 6627 6698 -1344 21 0 0 0 chr3 168962892 168962913 -58561665 + AT_rich Low_complexity Low_complexity 1 21 0 260 288 136 15 chr3 168963107 168963239 -58561339 + MIR3 SINE MIR 52 199 -9 274 312 56 8 chr3 168963386 168963511 -58561067 - MIR SINE MIR 0 262 132 2641 63 30 14 chr3 168963941 168964305 -58560273 - L1PA7 LINE L1 -8 6146 5777 330 266 94 16 chr3 168966011 168966139 -58558439 + MIR SINE MIR 49 186 -76 281 82 20 0 chr3 168967055 168967104 -58557474 + (CA)n Simple_repeat Simple_repeat 2 51 0 7160 55 2 0 chr3 168967524 168968817 -58555761 - L1PA5 LINE L1 -1 6153 4865 478 235 27 47 chr3 168969060 168969209 -58555369 - MIR SINE MIR -17 245 100 367 328 71 16 chr3 168970495 168970677 -58553901 - MIR SINE MIR -14 248 57 249 275 0 55 chr3 168970793 168970884 -58553694 + L2 LINE L2 3226 3311 -2 233 75 25 0 chr3 168970984 168971024 -58553554 + (TC)n Simple_repeat Simple_repeat 2 42 0 23 0 0 0 chr3 168972013 168972036 -58552542 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 168973703 168973726 -58550852 + AT_rich Low_complexity Low_complexity 1 23 0 429 259 0 0 chr3 168974101 168974182 -58550396 + MER81 DNA DNA 34 114 0 306 50 0 0 chr3 168975168 168975208 -58549370 + (CA)n Simple_repeat Simple_repeat 1 40 0 2150 121 0 7 chr3 168976247 168976554 -58548024 + AluSx SINE Alu 1 305 -7 497 226 1 0 chr3 168976951 168977060 -58547518 + L1MD2 LINE L1 5800 5912 -257 1658 158 59 25 chr3 168977103 168977425 -58547153 - MER50 LTR ERV1 -23 711 379 1496 128 16 24 chr3 168977403 168977653 -58546925 - MER50 LTR ERV1 -486 248 1 * 1259 232 75 55 chr3 168977653 168978093 -58546485 + L1MD2 LINE L1 5909 6357 -2 603 60 0 0 chr3 168978980 168979064 -58545514 + Alu SINE Alu 225 308 -1 322 182 76 0 chr3 168979522 168979588 -58544990 + MER57-int LTR ERV1 173 243 -7294 931 192 22 86 chr3 168979706 168980019 -58544559 + L1MA4 LINE L1 6007 6299 -1 3431 215 60 21 chr3 168980039 168980941 -58543637 - Looper DNA T2_type -107 1451 515 342 267 0 33 chr3 168981590 168981680 -58542898 + MER57-int LTR ERV1 2555 2641 -3690 512 252 108 27 chr3 168981700 168981922 -58542656 + MER34C LTR ERV1 158 397 -188 289 276 133 20 chr3 168981942 168982040 -58542538 + MER57-int LTR ERV1 1455 1563 -2628 283 142 208 47 chr3 168982085 168982191 -58542387 - LTR48B LTR ERV1 -288 356 234 840 242 45 19 chr3 168982650 168983022 -58541556 + MER57-int LTR ERV1 2365 3194 -1686 * 2954 248 75 116 chr3 168983009 168985509 -58539069 + MER57-int LTR ERV1 3966 6881 -656 2488 182 34 0 chr3 168985509 168985955 -58538623 - LOR1b LTR ERV1 0 461 1 2954 248 75 116 chr3 168985955 168986208 -58538370 + MER57-int LTR ERV1 6881 7143 -394 392 165 76 0 chr3 168986211 168986290 -58538288 + LTR54B LTR ERV1 2 86 -412 420 254 214 0 chr3 168986351 168986477 -58538101 + MER57A LTR ERV1 195 347 -56 213 94 0 0 chr3 168986477 168986509 -58538069 + (CTTTG)n Simple_repeat Simple_repeat 4 35 0 233 367 14 48 chr3 168987382 168987529 -58537049 - MIR3 SINE MIR -49 159 18 683 340 87 0 chr3 168987744 168987985 -58536593 + LTR33 LTR ERVL 23 284 -237 1136 239 72 27 chr3 168988670 168989114 -58535464 - LTR37B LTR ERV1 -4 464 1 368 248 24 60 chr3 168990950 168991101 -58533477 + MLT1J2 LTR MaLR 72 219 -231 22 0 0 0 chr3 168992199 168992221 -58532357 + AT_rich Low_complexity Low_complexity 1 22 0 212 97 0 81 chr3 168993106 168993168 -58531410 + (TTCTC)n Simple_repeat Simple_repeat 5 61 0 1497 92 0 0 chr3 168993169 168993365 -58531213 - AluSg/x SINE Alu -3 309 114 932 73 0 0 chr3 168993365 168993474 -58531104 + AluSg SINE Alu 14 122 -188 219 36 0 0 chr3 168994135 168994163 -58530415 + (TG)n Simple_repeat Simple_repeat 1 28 0 218 103 0 26 chr3 168994409 168994448 -58530130 + (TG)n Simple_repeat Simple_repeat 2 39 0 29 0 0 0 chr3 168994799 168994828 -58529750 + AT_rich Low_complexity Low_complexity 1 29 0 259 255 266 0 chr3 168994944 168995038 -58529540 - L2 LINE L2 -6 3266 3148 218 190 0 69 chr3 168995410 168995437 -58529141 - L2 LINE L2 -9 3304 3282 1793 169 56 45 chr3 168995437 168995899 -58528679 + MLT1C LTR MaLR 1 467 0 218 190 0 69 chr3 168995899 168995929 -58528649 - L2 LINE L2 -31 3282 3251 261 234 60 96 chr3 168996940 168997200 -58527378 + MLT1J2 LTR MaLR 221 541 -1 552 276 18 0 chr3 168997957 168998120 -58526458 - MIR SINE MIR 0 262 97 864 317 35 55 chr3 168998240 168998644 -58525934 - L2 LINE L2 0 3313 2918 541 235 33 6 chr3 168998644 168998825 -58525753 - MLT1C LTR MaLR -3 464 178 2291 101 0 3 chr3 168998825 168999122 -58525456 - AluSq SINE Alu -17 296 1 416 33 0 0 chr3 168999128 168999188 -58525390 - AluY SINE Alu -4 307 248 1062 144 40 6 chr3 168999190 168999363 -58525215 - MLT1C LTR MaLR -286 181 3 294 287 16 2 chr3 168999738 168999841 -58524737 - MLT1L LTR MaLR -342 246 152 2071 162 86 74 chr3 168999865 169000151 -58524427 + LTR44 LTR ERV1 25 321 -198 691 174 0 36 chr3 169000151 169000289 -58524289 + FLAM_C SINE Alu 1 133 0 2071 162 86 74 chr3 169000289 169000491 -58524087 + LTR44 LTR ERV1 321 519 0 630 121 0 10 chr3 169000563 169000662 -58523916 + MER4A LTR ERV1 1 98 -566 837 135 131 26 chr3 169000665 169000871 -58523707 + MER4A LTR ERV1 264 550 -114 3324 154 96 39 chr3 169000871 169001591 -58522987 - MER4E LTR ERV1 0 779 19 23 54 0 0 chr3 169001939 169001976 -58522602 + AT_rich Low_complexity Low_complexity 1 37 0 542 301 64 10 chr3 169002466 169002669 -58521909 + MIR SINE MIR 40 253 -9 1391 161 110 65 chr3 169002823 169003252 -58521326 + LTR7 LTR ERV1 1 448 -2 16200 104 18 20 chr3 169003254 169006348 -58518230 + HERVH LTR ERV1 1 2987 -4726 822 162 20 0 chr3 169006342 169006490 -58518088 + HERVH LTR ERV1 3140 3290 -4423 * 3578 82 4 6 chr3 169006480 169006983 -58517595 + HERVH LTR ERV1 3492 3993 -3720 4114 156 5 5 chr3 169006985 169007647 -58516931 + HERVH LTR ERV1 4488 5149 -2564 1157 131 87 5 chr3 169007644 169007850 -58516728 + HERVH LTR ERV1 5597 5819 -1894 * 2445 82 53 13 chr3 169007847 169008225 -58516353 + HERVH LTR ERV1 7321 7713 0 1318 163 112 70 chr3 169008225 169008655 -58515923 + LTR7 LTR ERV1 1 448 -2 22 70 0 0 chr3 169008677 169008720 -58515858 + AT_rich Low_complexity Low_complexity 1 43 0 27 49 0 0 chr3 169009370 169009411 -58515167 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr3 169009492 169009516 -58515062 + AT_rich Low_complexity Low_complexity 1 24 0 3515 171 97 16 chr3 169009524 169010170 -58514408 + MER44D DNA MER2_type 3 578 -1909 8794 49 2 3 chr3 169010170 169011242 -58513336 + MER11C LTR ERVK 1 1071 0 3515 171 97 16 chr3 169011242 169011266 -58513312 + MER44D DNA MER2_type 578 599 -6 1499 148 8 4 chr3 169011586 169011836 -58512742 + Tigger1 DNA MER2_type 1 251 -2167 * 4279 132 25 19 chr3 169011828 169012548 -58512030 + Tigger1 DNA MER2_type 1694 2417 -1 259 203 169 0 chr3 169012617 169012676 -58511902 + Tigger2 DNA MER2_type 1 69 -2649 * 2756 131 14 7 chr3 169012674 169013110 -58511468 + Tigger2 DNA MER2_type 2280 2718 0 2847 129 32 18 chr3 169014272 169014767 -58509811 - L1MA5A LINE L1 -4 6293 5792 1756 149 30 10 chr3 169014894 169015189 -58509389 + AluSx SINE Alu 1 301 -11 485 234 249 19 chr3 169016372 169016581 -58507997 + MIR SINE MIR 6 262 0 318 360 9 0 chr3 169017210 169017324 -58507254 + L1MC4 LINE L1 6589 6703 -1339 233 132 0 57 chr3 169017324 169017377 -58507201 + (TATATG)n Simple_repeat Simple_repeat 2 51 0 298 330 0 0 chr3 169017818 169017924 -58506654 + (CCA)n Simple_repeat Simple_repeat 3 108 0 1500 194 37 3 chr3 169018932 169019226 -58505352 + AluJo SINE Alu 1 304 -8 1497 229 149 82 chr3 169020682 169021293 -58503285 + MLT1E3 LTR MaLR 1 622 -2 207 0 0 0 chr3 169021460 169021483 -58503095 + (TC)n Simple_repeat Simple_repeat 2 24 0 363 44 0 0 chr3 169021496 169021541 -58503037 + (TG)n Simple_repeat Simple_repeat 2 46 0 295 287 63 24 chr3 169022065 169022480 -58502098 - L1M4 LINE L1 -2616 3530 3100 522 324 83 37 chr3 169022668 169023186 -58501392 - L1M4 LINE L1 -3378 2768 2227 323 379 41 9 chr3 169023206 169023425 -58501153 + L1M4 LINE L1 2600 2825 -3321 309 260 0 39 chr3 169023601 169023678 -58500900 - L2 LINE L2 -47 3266 3193 335 306 191 30 chr3 169023693 169023892 -58500686 - MIR SINE MIR -29 233 3 21 0 0 0 chr3 169025906 169025927 -58498651 + AT_rich Low_complexity Low_complexity 1 21 0 419 291 123 32 chr3 169026018 169026238 -58498340 + MIR SINE MIR 1 240 -22 30 27 0 0 chr3 169027094 169027131 -58497447 + AT_rich Low_complexity Low_complexity 1 37 0 1750 201 61 30 chr3 169028329 169028667 -58495911 + MLT2D LTR ERVL 1 354 -60 387 41 0 0 chr3 169028667 169028716 -58495862 + (TG)n Simple_repeat Simple_repeat 2 50 0 1750 201 61 30 chr3 169028716 169028771 -58495807 + MLT2D LTR ERVL 354 406 -8 201 147 0 0 chr3 169029110 169029144 -58495434 + (GGAA)n Simple_repeat Simple_repeat 3 36 0 296 261 84 21 chr3 169029444 169029586 -58494992 - L2 LINE L2 -40 3273 3123 24 32 0 0 chr3 169030218 169030249 -58494329 + AT_rich Low_complexity Low_complexity 1 31 0 182 321 57 0 chr3 169031097 169031150 -58493428 + L2 LINE L2 3216 3271 -1 244 320 80 40 chr3 169031191 169031291 -58493287 + MIR SINE MIR 19 122 -86 237 279 25 0 chr3 169031505 169031584 -58492994 + Zaphod DNA AcHobo 25 105 -3926 357 211 116 0 chr3 169031587 169031682 -58492896 + L1ME LINE L1 5709 5814 -348 665 249 89 42 chr3 169031856 169032093 -58492485 - MLT1D LTR MaLR -78 427 180 2425 67 0 3 chr3 169032097 169032396 -58492182 - AluY SINE Alu -13 298 1 1801 88 8 4 chr3 169032424 169032662 -58491916 + AluSc SINE Alu 66 304 -5 240 295 14 53 chr3 169032665 169032840 -58491738 - MLT1E2 LTR MaLR -334 171 4 3543 133 71 51 chr3 169033206 169033855 -58490723 - MER4E LTR ERV1 -117 662 1 794 130 8 16 chr3 169033855 169033973 -58490605 + MER4A LTR ERV1 547 663 -1 457 330 25 97 chr3 169034159 169034520 -58490058 - L2 LINE L2 0 3272 2938 744 192 81 120 chr3 169034814 169035381 -58489197 - MER34B LTR ERV1 -19 634 1 201 320 51 90 chr3 169035412 169035616 -58488962 - L2 LINE L2 -896 2418 2224 351 0 0 0 chr3 169035616 169035655 -58488923 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 201 320 51 90 chr3 169035655 169035706 -58488872 - L2 LINE L2 -1090 2224 2173 189 107 0 0 chr3 169035809 169035837 -58488741 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 540 232 162 71 chr3 169035884 169036082 -58488496 - MIR SINE MIR -28 234 19 411 232 149 45 chr3 169036326 169036553 -58488025 + L1ME4a LINE L1 5657 5905 -216 1687 166 0 33 chr3 169036580 169036882 -58487696 + AluJb SINE Alu 1 292 -20 242 197 0 0 chr3 169036884 169036945 -58487633 - L1MC4 LINE L1 -1342 6700 6640 24 0 0 0 chr3 169037436 169037460 -58487118 + AT_rich Low_complexity Low_complexity 1 24 0 1623 178 0 7 chr3 169038658 169038934 -58485644 + AluJo SINE Alu 5 278 -34 529 108 0 0 chr3 169038934 169039008 -58485570 + (GGAA)n Simple_repeat Simple_repeat 1 74 0 737 173 0 32 chr3 169039008 169039193 -58485385 + GA-rich Low_complexity Low_complexity 1 179 0 288 307 51 66 chr3 169039216 169039353 -58485225 + L2 LINE L2 3177 3311 -2 196 403 0 0 chr3 169040721 169040788 -58483790 - L2 LINE L2 -1 3271 3205 25 0 0 0 chr3 169041088 169041113 -58483465 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 169041291 169041312 -58483266 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 169042356 169042387 -58482191 + AT_rich Low_complexity Low_complexity 1 31 0 542 330 64 60 chr3 169042427 169042958 -58481620 + LTR67 LTR ERVL 25 557 0 21 36 0 0 chr3 169043424 169043452 -58481126 + AT_rich Low_complexity Low_complexity 1 28 0 2243 131 19 16 chr3 169044296 169044670 -58479908 + THE1C LTR MaLR 1 375 0 689 297 146 5 chr3 169044851 169045070 -58479508 + MIR SINE MIR 13 262 0 257 347 35 46 chr3 169045830 169046003 -58478575 + MIR SINE MIR 53 223 -39 330 287 119 54 chr3 169047732 169047772 -58476806 - L1M4 LINE L1 -2036 4110 4074 2332 129 8 21 chr3 169047772 169048152 -58476426 - THE1C LTR MaLR 0 375 1 330 287 119 54 chr3 169048152 169048463 -58476115 - L1M4 LINE L1 -2072 4074 3736 1472 230 73 46 chr3 169049083 169049434 -58475144 - MLT1C LTR MaLR -1 466 99 4710 64 3 3 chr3 169049434 169050041 -58474537 - L1PA7 LINE L1 -8 6146 5540 1472 230 73 46 chr3 169050041 169050142 -58474436 - MLT1C LTR MaLR -368 99 2 33 97 0 0 chr3 169050161 169050264 -58474314 + AT_rich Low_complexity Low_complexity 1 103 0 180 154 103 0 chr3 169050590 169050629 -58473949 - L3 LINE CR1 -197 1380 1338 17819 41 2 18 chr3 169051053 169053419 -58471159 + L1P LINE L1 2387 4715 -1431 239 349 12 0 chr3 169053446 169053529 -58471049 + GA-rich Low_complexity Low_complexity 2 85 0 230 327 75 19 chr3 169054743 169054850 -58469728 + L2 LINE L2 3181 3293 -20 316 285 92 67 chr3 169055707 169056177 -58468401 - LTR33A LTR ERVL -2 521 6 284 243 58 19 chr3 169056205 169056308 -58468270 + Charlie7 DNA MER1_type 2 108 -2504 2109 123 0 3 chr3 169056323 169056615 -58467963 + AluSc SINE Alu 3 293 -16 633 185 72 118 chr3 169056619 169056814 -58467764 - AluJo SINE Alu -30 282 97 1152 267 119 27 chr3 169056822 169057383 -58467195 + Charlie7 DNA MER1_type 78 690 -1922 460 272 29 7 chr3 169057937 169058073 -58466505 - LTR40a LTR ERVL -18 501 363 21 36 0 0 chr3 169058755 169058783 -58465795 + AT_rich Low_complexity Low_complexity 1 28 0 2157 114 3 16 chr3 169058848 169059156 -58465422 + AluSg SINE Alu 3 306 -4 2232 99 3 7 chr3 169061438 169061741 -58462837 + AluSc SINE Alu 1 302 -7 252 167 0 0 chr3 169061994 169062042 -58462536 + (ATG)n Simple_repeat Simple_repeat 2 49 0 317 244 12 12 chr3 169062065 169062147 -58462431 - MIR SINE MIR -3 259 178 1391 164 43 21 chr3 169062665 169062945 -58461633 + AluJb SINE Alu 1 286 -26 717 182 23 8 chr3 169063364 169063496 -58461082 + MLT1K LTR MaLR 447 580 -8 260 235 0 0 chr3 169064453 169064504 -58460074 + L2 LINE L2 3209 3259 -13 21 0 0 0 chr3 169064541 169064562 -58460016 + AT_rich Low_complexity Low_complexity 1 21 0 810 282 5 24 chr3 169064664 169064873 -58459705 - MIR SINE MIR -25 237 33 882 187 16 16 chr3 169064926 169065113 -58459465 - MER5A DNA MER1_type -1 188 2 456 225 201 18 chr3 169065523 169065692 -58458886 - L2 LINE L2 0 3313 3114 847 286 145 15 chr3 169065876 169066208 -58458370 - L2 LINE L2 -456 2858 2484 660 179 229 36 chr3 169066413 169066636 -58457942 + LTR37B LTR ERV1 203 468 0 284 235 15 0 chr3 169066639 169066707 -58457871 - L2 LINE L2 -829 2485 2417 2065 109 3 11 chr3 169066756 169067085 -58457493 - AluSx SINE Alu 0 327 1 1485 328 79 18 chr3 169067297 169067952 -58456626 - L2 LINE L2 -1696 1618 924 2073 133 0 0 chr3 169068092 169068386 -58456192 - AluSx SINE Alu -18 294 1 180 200 0 0 chr3 169068460 169068500 -58456078 + A-rich Low_complexity Low_complexity 1 40 0 931 258 56 89 chr3 169070202 169070787 -58453791 - MER21B LTR ERV1 -157 706 141 378 260 41 14 chr3 169070796 169070942 -58453636 - L1MC/D LINE L1 -2345 5463 5314 331 310 60 32 chr3 169071028 169071344 -58453234 - L1MC/D LINE L1 -945 5201 4877 2025 155 21 19 chr3 169071394 169071768 -58452810 + THE1C LTR MaLR 1 375 0 7568 137 42 6 chr3 169071768 169072954 -58451624 + THE1C-int LTR MaLR 1 1229 -351 1796 166 51 3 chr3 169073341 169073673 -58450905 + MER7A DNA MER2_type 1 346 0 347 351 89 57 chr3 169073704 169074206 -58450372 - L2 LINE L2 -550 2764 2221 1951 152 3 0 chr3 169074206 169074496 -58450082 + AluSx SINE Alu 1 291 -21 347 351 89 57 chr3 169074496 169074842 -58449736 - L2 LINE L2 -1093 2221 1888 197 232 36 18 chr3 169077961 169078017 -58446561 + MIR SINE MIR 156 212 -50 225 94 0 0 chr3 169079662 169079694 -58444884 + (TC)n Simple_repeat Simple_repeat 1 32 0 289 254 283 23 chr3 169079786 169079959 -58444619 - MIR SINE MIR -43 219 2 1234 206 99 11 chr3 169080294 169080576 -58444002 + MLT2D LTR ERVL 2 308 -106 288 137 0 0 chr3 169080576 169080627 -58443951 + (TC)n Simple_repeat Simple_repeat 1 51 0 692 226 89 62 chr3 169081133 169081390 -58443188 - MLT1A1 LTR MaLR 0 365 102 736 313 29 26 chr3 169081421 169081728 -58442850 - MLT-int LTR MaLR -965 770 463 963 181 10 25 chr3 169081862 169082061 -58442517 - MLT1A1-int LTR MaLR -1538 197 2 1022 216 119 9 chr3 169082064 169082291 -58442287 - MLT1A1 LTR MaLR -1 364 113 1078 246 47 97 chr3 169082337 169082915 -58441663 - MLT1G LTR MaLR -7 583 35 1395 246 44 26 chr3 169083046 169083433 -58441145 + MSTD LTR MaLR 1 394 -2 1093 113 6 0 chr3 169083918 169084086 -58440492 - L1PA13 LINE L1 -1 6162 5994 710 318 98 34 chr3 169084262 169084534 -58440044 + L2 LINE L2 2840 3152 -161 3879 100 11 0 chr3 169084534 169085082 -58439496 - MER41A LTR ERV1 0 554 1 710 318 98 34 chr3 169085082 169085249 -58439329 + L2 LINE L2 3152 3307 -6 23 92 0 0 chr3 169085538 169085603 -58438975 + AT_rich Low_complexity Low_complexity 1 65 0 2101 198 84 6 chr3 169086644 169087120 -58437458 + MER67D LTR ERV1 2 514 0 410 216 11 0 chr3 169087211 169087299 -58437279 + L1ME3A LINE L1 6072 6160 -10 517 271 58 39 chr3 169087319 169087526 -58437052 + MIR SINE MIR 52 262 0 2784 111 69 6 chr3 169087624 169088101 -58436477 + L1M1 LINE L1 2373 2879 -4686 4292 206 8 16 chr3 169088126 169089136 -58435442 + L1M1 LINE L1 3730 4731 -2834 285 291 76 60 chr3 169089239 169089490 -58435088 + LTR48 LTR ERV1 524 778 -9 263 232 18 0 chr3 169090513 169090569 -58434009 + CT-rich Low_complexity Low_complexity 2 58 0 776 171 57 11 chr3 169090598 169090773 -58433805 - MER45R DNA AcHobo -14 1567 1385 285 339 23 39 chr3 169091449 169091709 -58432869 + ERVL LTR ERVL 781 1036 -3960 3624 125 131 51 chr3 169092444 169093731 -58430847 - pTR5 LTR ERV1 -143 2295 744 300 399 20 10 chr3 169093720 169094021 -58430557 + ERVL LTR ERVL 4810 5113 -651 * 1886 106 51 27 chr3 169094021 169094314 -58430264 + AluSg SINE Alu 1 300 -10 21 36 0 0 chr3 169094530 169094558 -58430020 + AT_rich Low_complexity Low_complexity 1 28 0 1178 286 19 0 chr3 169094841 169095166 -58429412 + LTR16C LTR ERVL 149 479 -12 1118 131 103 9 chr3 169096070 169096210 -58428368 - L1PA16 LINE L1 -8 6158 5990 186 43 0 0 chr3 169096210 169096233 -58428345 + (TCCC)n Simple_repeat Simple_repeat 4 26 0 1118 131 103 9 chr3 169096233 169096306 -58428272 - L1PA16 LINE L1 -176 5990 5925 1600 165 94 14 chr3 169096438 169096789 -58427789 - MLT1B LTR MaLR -11 379 1 201 74 0 0 chr3 169096885 169096912 -58427666 + (A)n Simple_repeat Simple_repeat 1 27 0 889 256 117 8 chr3 169097273 169097632 -58426946 + L1ME3A LINE L1 5684 6081 -89 268 351 58 13 chr3 169098147 169098301 -58426277 + L2 LINE L2 2459 2619 -695 2116 222 23 56 chr3 169098369 169098876 -58425702 + MER92B LTR ERV1 1 486 -150 2394 73 10 7 chr3 169098876 169099000 -58425578 + AluY SINE Alu 1 123 -188 189 0 0 0 chr3 169099000 169099021 -58425557 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 2394 73 10 7 chr3 169099021 169099199 -58425379 + AluY SINE Alu 123 304 -7 2116 222 23 56 chr3 169099199 169099295 -58425283 + MER92B LTR ERV1 486 584 -52 220 390 130 43 chr3 169099598 169099875 -58424703 + L2 LINE L2 2950 3250 -22 236 312 65 29 chr3 169100669 169100807 -58423771 - MLT1K LTR MaLR -361 227 85 241 239 30 0 chr3 169102893 169102960 -58421618 + (TA)n Simple_repeat Simple_repeat 2 70 0 22 56 0 0 chr3 169103315 169103351 -58421227 + AT_rich Low_complexity Low_complexity 1 36 0 1474 125 17 0 chr3 169103536 169103768 -58420810 + L1PA14 LINE L1 5925 6160 -1 425 171 16 23 chr3 169104484 169104613 -58419965 + CT-rich Low_complexity Low_complexity 1 128 0 269 299 0 0 chr3 169104658 169104735 -58419843 + (TGAA)n Simple_repeat Simple_repeat 1 77 0 24 32 0 0 chr3 169104802 169104833 -58419745 + AT_rich Low_complexity Low_complexity 1 31 0 2045 124 40 13 chr3 169105768 169106066 -58418512 + AluSx SINE Alu 1 306 -6 346 242 24 12 chr3 169106618 169106785 -58417793 - L1M2 LINE L1 -714 5437 5290 204 125 0 0 chr3 169106892 169106924 -58417654 + (TC)n Simple_repeat Simple_repeat 1 32 0 2033 78 7 11 chr3 169106924 169107195 -58417383 - AluY SINE Alu -10 301 32 284 309 36 12 chr3 169107299 169107464 -58417114 - L1M4 LINE L1 -1183 4963 4795 23 0 0 0 chr3 169108979 169109002 -58415576 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 169110669 169110692 -58413886 + AT_rich Low_complexity Low_complexity 1 23 0 3133 133 9 22 chr3 169110836 169111370 -58413208 + THE1C-int LTR MaLR 1054 1580 0 2150 138 13 39 chr3 169111370 169111755 -58412823 + THE1C LTR MaLR 1 375 0 375 301 4 36 chr3 169111904 169112153 -58412425 - L1M4 LINE L1 -1751 4395 4155 290 177 0 73 chr3 169112385 169112481 -58412097 + GA-rich Low_complexity Low_complexity 1 89 0 218 225 0 14 chr3 169112498 169112569 -58412009 + G-rich Low_complexity Low_complexity 4 73 0 255 254 0 0 chr3 169112597 169112656 -58411922 + G-rich Low_complexity Low_complexity 1 59 0 1105 89 6 6 chr3 169112678 169112836 -58411742 + L1PA3 LINE L1 5995 6152 -3 317 302 9 0 chr3 169114507 169114623 -58409955 - L1MEc LINE L1 -4768 1628 1512 531 278 0 11 chr3 169114747 169114923 -58409655 + L1MC5 LINE L1 7038 7211 -750 365 302 79 16 chr3 169114932 169115259 -58409319 - MLT1G1 LTR MaLR -7 535 215 724 105 192 47 chr3 169115260 169115432 -58409146 - MER20 DNA MER1_type -6 213 17 428 252 92 19 chr3 169115452 169115632 -58408946 - MLT1G1 LTR MaLR -349 246 10 1074 223 61 36 chr3 169115664 169116136 -58408442 + L1MC5 LINE L1 7301 7784 -177 33 25 0 0 chr3 169116231 169116271 -58408307 + AT_rich Low_complexity Low_complexity 1 40 0 933 242 32 60 chr3 169216746 169217147 -58307431 - L1M4 LINE L1 -1503 4643 4254 1220 252 90 13 chr3 169218857 169219234 -58305344 + MER65A LTR ERV1 40 445 0 1842 235 58 11 chr3 169219364 169219810 -58304768 - MLT1C LTR MaLR 0 467 1 2217 96 34 0 chr3 169219854 169220146 -58304432 + AluSx SINE Alu 1 302 -10 735 211 44 10 chr3 169220174 169220378 -58304200 + MSTA LTR MaLR 1 211 -217 538 236 73 6 chr3 169224413 169224591 -58299987 - MIR SINE MIR -3 259 70 461 96 12 48 chr3 169224636 169224719 -58299859 + MADE1 DNA Mariner 1 80 0 23 0 0 0 chr3 169225769 169225792 -58298786 + AT_rich Low_complexity Low_complexity 1 23 0 1183 271 70 43 chr3 169226056 169226284 -58298294 - L1ME3A LINE L1 -273 5897 5677 834 236 16 0 chr3 169226284 169226466 -58298112 - MER5A DNA MER1_type -1 188 4 1183 271 70 43 chr3 169226466 169226823 -58297755 - L1ME3A LINE L1 -493 5677 5296 373 278 21 21 chr3 169227155 169227299 -58297279 + L2 LINE L2 2636 2779 -535 954 162 6 29 chr3 169227941 169228114 -58296464 + MER58A DNA MER1_type 43 211 -13 4355 127 181 142 chr3 169228171 169229539 -58295039 - pTR5 LTR ERV1 0 2438 1017 353 267 189 21 chr3 169230934 169231215 -58293363 - L1MC4a LINE L1 -1926 5882 5555 * 380 193 70 35 chr3 169231202 169231316 -58293262 + L1MC5 LINE L1 7505 7622 -339 960 147 6 13 chr3 169231319 169231475 -58293103 + FRAM SINE Alu 1 155 -21 268 169 0 70 chr3 169231475 169231546 -58293032 + L1MC5 LINE L1 7614 7679 -282 384 211 72 79 chr3 169231590 169231742 -58292836 + L1MC5 LINE L1 7775 7925 -36 303 293 79 20 chr3 169231728 169231909 -58292669 - L1MC4a LINE L1 -590 5580 5385 * 933 271 60 33 chr3 169231932 169232388 -58292190 + MER90 LTR ERV1 83 587 -27 21 0 0 0 chr3 169233880 169233901 -58290677 + AT_rich Low_complexity Low_complexity 1 21 0 4557 35 16 1 chr3 169234468 169235168 -58289410 - L1P1 LINE L1 -670 5485 4772 535 170 92 20 chr3 169235579 169235732 -58288846 + L1MA8 LINE L1 6028 6191 -100 398 315 117 10 chr3 169236178 169236375 -58288203 + LTR33A LTR ERVL 3 220 -303 1018 155 69 25 chr3 169236638 169236883 -58287695 - L1MA8 LINE L1 -5 6286 6031 246 32 0 0 chr3 169239975 169240006 -58284572 + (A)n Simple_repeat Simple_repeat 1 31 0 10761 95 6 2 chr3 169240700 169242772 -58281806 - L1PA7 LINE L1 -216 5938 3858 323 187 133 73 chr3 169243942 169244092 -58280486 + L1MC/D LINE L1 5613 5771 -2037 562 298 70 13 chr3 169244171 169244486 -58280092 + L1MC/D LINE L1 5315 5647 -2161 2163 125 0 3 chr3 169244487 169244782 -58279796 + AluSc SINE Alu 1 294 -15 1279 108 0 0 chr3 169244782 169244967 -58279611 + L1PB1 LINE L1 5964 6148 -3 269 290 0 0 chr3 169246067 169246136 -58278442 + MIR SINE MIR 194 262 0 261 294 137 20 chr3 169246314 169246460 -58278118 - MIR SINE MIR -32 230 68 193 368 136 39 chr3 169246549 169246859 -58277719 - L2 LINE L2 -33 3239 2900 2781 77 8 6 chr3 169248810 169249173 -58275405 + SVA Other Other 1014 1377 -9 2133 114 0 0 chr3 169249219 169249525 -58275053 + AluSg SINE Alu 1 306 0 1751 226 39 47 chr3 169249536 169250046 -58274532 + MLT2B1 LTR ERVL 15 520 0 226 175 62 93 chr3 169250143 169250240 -58274338 + L1MC/D LINE L1 5644 5737 -2071 241 302 12 0 chr3 169250274 169250360 -58274218 + A-rich Low_complexity Low_complexity 3 89 0 367 237 52 31 chr3 169251929 169252026 -58272552 + MIR SINE MIR 160 258 -4 870 295 62 26 chr3 169252314 169252701 -58271877 - LTR16C LTR ERVL -2 489 89 261 323 56 41 chr3 169252871 169253140 -58271438 - MERVL LTR ERVL -149 5336 5064 595 330 37 51 chr3 169253533 169253967 -58270611 - MERVL LTR ERVL -1099 4555 4128 657 337 52 54 chr3 169254877 169255432 -58269146 - ERVL LTR ERVL -3263 2501 1948 797 230 11 0 chr3 169255598 169255772 -58268806 - MLT1F1 LTR MaLR 0 567 392 272 244 90 0 chr3 169255941 169256019 -58268559 - MLT1F1 LTR MaLR -191 376 292 652 264 15 15 chr3 169256692 169256889 -58267689 - LTR16C LTR ERVL 0 491 295 790 186 86 21 chr3 169256891 169257111 -58267467 + MSTC LTR MaLR 1 235 -161 8942 78 1 2 chr3 169258222 169259507 -58265071 + L1P LINE L1 1196 2478 -3668 2490 211 70 16 chr3 169259542 169260153 -58264425 + MER21B LTR ERV1 220 863 0 207 100 0 0 chr3 169260509 169260539 -58264039 + (GAAAA)n Simple_repeat Simple_repeat 4 33 0 1464 126 0 14 chr3 169260619 169260833 -58263745 - AluY SINE Alu -100 211 1 21 0 0 0 chr3 169261180 169261201 -58263377 + AT_rich Low_complexity Low_complexity 1 21 0 406 263 45 56 chr3 169261226 169261424 -58263154 - MLT1G LTR MaLR -57 533 338 13781 103 26 8 chr3 169261825 169264105 -58260473 - L1P LINE L1 -2483 3663 1341 2222 201 27 20 chr3 169264106 169264699 -58259879 - L1P LINE L1 -4546 1600 1004 1655 176 3 30 chr3 169265737 169266038 -58258540 - AluJo SINE Alu -19 293 1 2363 103 0 3 chr3 169266332 169266642 -58257936 - AluSx SINE Alu -3 309 1 303 210 32 0 chr3 169266642 169266704 -58257874 + MER5A DNA MER1_type 126 189 0 600 97 177 32 chr3 169267095 169267219 -58257359 - MER30 DNA MER1_type -88 142 1 501 259 38 8 chr3 169267249 169267398 -58257180 + L1MC/D LINE L1 5526 5681 -489 234 311 9 46 chr3 169268003 169268210 -58256368 + CT-rich Low_complexity Low_complexity 1 199 0 490 200 53 27 chr3 169268887 169269037 -58255541 + MSTC LTR MaLR 243 396 0 377 258 123 45 chr3 169269990 169270145 -58254433 + MIR SINE MIR 41 207 -55 721 227 175 25 chr3 169270531 169270857 -58253721 - MLT1E2 LTR MaLR -234 392 18 425 332 92 30 chr3 169270973 169271235 -58253343 + L1MEc LINE L1 1539 1816 -4580 381 131 0 0 chr3 169271425 169271486 -58253092 + (TG)n Simple_repeat Simple_repeat 1 61 0 258 229 84 0 chr3 169271591 169271674 -58252904 + L1MEc LINE L1 2215 2304 -4092 3923 155 13 29 chr3 169271692 169272481 -58252097 + L1PA6 LINE L1 387 1162 -4984 1934 157 3 0 chr3 169274485 169274779 -58249799 + AluSp SINE Alu 6 300 -13 2028 138 10 0 chr3 169276498 169276796 -58247782 + AluSp SINE Alu 3 303 -10 21436 82 3 2 chr3 169278293 169282052 -58242526 + L1PA6 LINE L1 2384 6154 0 478 284 80 68 chr3 169282171 169283223 -58241355 + L1MEc LINE L1 2924 3995 -2220 204 40 0 0 chr3 169283223 169283248 -58241330 + (CA)n Simple_repeat Simple_repeat 2 26 0 478 284 80 68 chr3 169283248 169283440 -58241138 + L1MEc LINE L1 3995 4183 -2032 403 305 100 41 chr3 169283470 169284255 -58240323 + L1MEc LINE L1 4251 5114 -1101 207 304 0 14 chr3 169284457 169284526 -58240052 + CT-rich Low_complexity Low_complexity 5 72 0 321 231 172 15 chr3 169285183 169285317 -58239261 + L1ME4a LINE L1 5965 6119 -2 23 0 0 0 chr3 169285452 169285475 -58239103 + AT_rich Low_complexity Low_complexity 1 23 0 1043 201 117 0 chr3 169286962 169287271 -58237307 - L1MEc LINE L1 -3119 3421 3077 477 47 0 0 chr3 169288603 169288667 -58235911 + (TG)n Simple_repeat Simple_repeat 2 65 0 481 55 27 0 chr3 169288985 169289058 -58235520 + (TCTA)n Simple_repeat Simple_repeat 4 78 0 2547 36 0 16 chr3 169289069 169289373 -58235205 + AluY SINE Alu 1 299 -12 313 286 68 48 chr3 169289684 169289890 -58234688 - HSATI Satellite Satellite -324 253 44 967 235 74 9 chr3 169290275 169290611 -58233967 + L1P LINE L1 2 359 -5787 1685 85 50 8 chr3 169290953 169291212 -58233366 - L1PA7 LINE L1 -56 6098 5829 386 91 0 0 chr3 169291182 169291237 -58233341 + L1PA6 LINE L1 5820 5874 -280 * 971 171 0 78 chr3 169291233 169291478 -58233100 - L1 LINE L1 -1140 5006 4781 375 276 69 62 chr3 169292123 169292528 -58232050 - L1MEc LINE L1 -873 2028 1529 21 0 0 0 chr3 169295723 169295744 -58228834 + AT_rich Low_complexity Low_complexity 1 21 0 2147 205 160 33 chr3 169295851 169296427 -58228151 - MLT1E1 LTR MaLR 0 654 6 1005 293 45 7 chr3 169296884 169297311 -58227267 + L1M4 LINE L1 4164 4606 -1540 427 203 130 23 chr3 169297451 169297628 -58226950 + MER5C DNA MER1_type 129 324 0 1406 215 57 28 chr3 169298587 169298941 -58225637 + MLT1D LTR MaLR 142 505 0 23 0 0 0 chr3 169298950 169298973 -58225605 + AT_rich Low_complexity Low_complexity 1 23 0 223 158 18 18 chr3 169299002 169299059 -58225519 + (CA)n Simple_repeat Simple_repeat 1 57 0 300 336 55 0 chr3 169302268 169302378 -58222200 - MIR SINE MIR -109 153 38 2170 177 26 9 chr3 169302486 169302905 -58221673 + MSTB LTR MaLR 1 426 0 492 94 41 33 chr3 169303359 169303614 -58220964 + (TA)n Simple_repeat Simple_repeat 1 257 0 206 157 59 0 chr3 169304635 169304686 -58219892 + (TCTA)n Simple_repeat Simple_repeat 2 55 0 2724 117 112 0 chr3 169305246 169305691 -58218887 - LTR44 LTR ERV1 0 519 25 23 54 0 0 chr3 169307700 169307737 -58216841 + AT_rich Low_complexity Low_complexity 1 37 0 1805 103 26 0 chr3 169307768 169308039 -58216539 + L1MA1 LINE L1 6016 6293 -9 264 400 11 0 chr3 169308088 169308183 -58216395 - L2 LINE L2 -41 3231 3136 3500 145 58 17 chr3 169308382 169309038 -58215540 - Tigger4(Zombi) DNA MER2_type 0 2731 2049 205 246 14 0 chr3 169359263 169359332 -58165246 + (CCCCG)n Simple_repeat Simple_repeat 1 70 0 252 59 0 0 chr3 169362811 169362845 -58161733 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 27 0 0 0 chr3 169362871 169362898 -58161680 + AT_rich Low_complexity Low_complexity 1 27 0 375 237 52 31 chr3 169363522 169363619 -58160959 + MIR SINE MIR 160 258 -4 995 295 62 26 chr3 169363907 169364294 -58160284 - LTR16C LTR ERVL -2 489 89 369 370 34 34 chr3 169364465 169364789 -58159789 - ERVL LTR ERVL -387 5377 5054 794 347 50 38 chr3 169365125 169365646 -58158932 - ERVL LTR ERVL -1099 4555 4029 1126 327 46 49 chr3 169365692 169366474 -58158104 - ERVL LTR ERVL -1778 3986 3207 2050 340 55 42 chr3 169366630 169367855 -58156723 - ERVL LTR ERVL -2575 3189 1948 828 236 11 0 chr3 169368021 169368195 -58156383 - MLT1F1 LTR MaLR 0 567 392 266 257 106 18 chr3 169368364 169368477 -58156101 - MLT1F1 LTR MaLR -191 376 254 1086 316 66 25 chr3 169369116 169369315 -58155263 - LTR16C LTR ERVL 0 491 301 1455 214 58 51 chr3 169369315 169369708 -58154870 + MSTD LTR MaLR 1 396 0 1086 316 66 25 chr3 169369708 169369979 -58154599 - LTR16C LTR ERVL -190 301 2 21 36 0 0 chr3 169370183 169370211 -58154367 + AT_rich Low_complexity Low_complexity 1 28 0 376 258 123 45 chr3 169370656 169370811 -58153767 + MIR SINE MIR 41 207 -55 832 233 169 18 chr3 169371197 169371523 -58153055 - MLT1E2 LTR MaLR -234 392 18 263 329 87 36 chr3 169371682 169371901 -58152677 + L1ME3A LINE L1 1587 1816 -4580 241 267 13 0 chr3 169372016 169372091 -58152487 + L1ME3A LINE L1 1998 2073 -4323 411 113 0 0 chr3 169372091 169372153 -58152425 + (TG)n Simple_repeat Simple_repeat 2 63 0 267 291 133 0 chr3 169372182 169372340 -58152238 + L1ME3A LINE L1 2126 2304 -4092 32479 87 8 55 chr3 169372358 169378417 -58146161 + L1PA6 LINE L1 387 6154 0 975 291 112 52 chr3 169378532 169379587 -58144991 + L1ME3A LINE L1 2924 3915 -2300 204 40 0 0 chr3 169379587 169379612 -58144966 + (CA)n Simple_repeat Simple_repeat 2 26 0 975 291 112 52 chr3 169379612 169380783 -58143795 + L1ME3A LINE L1 3915 5282 -933 216 264 9 9 chr3 169380789 169380895 -58143683 + CT-rich Low_complexity Low_complexity 3 108 0 246 183 226 32 chr3 169381028 169381121 -58143457 + L1P2 LINE L1 5338 5448 -706 2132 93 0 4 chr3 169381127 169381431 -58143147 + AluSc SINE Alu 3 305 0 2121 216 39 45 chr3 169381442 169381951 -58142627 + MLT2B1 LTR ERVL 15 520 0 233 266 0 53 chr3 169382131 169382225 -58142353 + GA-rich Low_complexity Low_complexity 3 91 0 * 237 305 12 0 chr3 169382179 169382261 -58142317 + A-rich Low_complexity Low_complexity 3 85 0 543 252 118 106 chr3 169382261 169382677 -58141901 + L1ME3A LINE L1 5802 6222 -17 332 270 130 43 chr3 169382697 169382816 -58141762 - L1ME LINE L1 -401 5720 5613 2824 7 0 0 chr3 169382816 169383125 -58141453 - AluY SINE Alu -2 309 1 332 270 130 43 chr3 169383125 169383136 -58141442 - L1ME LINE L1 -508 5613 5604 627 42 21 21 chr3 169383136 169383232 -58141346 + (TAGA)n Simple_repeat Simple_repeat 4 99 0 332 270 130 43 chr3 169383232 169383285 -58141293 - L1ME LINE L1 -517 5604 5520 531 43 0 0 chr3 169383519 169383589 -58140989 + (CA)n Simple_repeat Simple_repeat 2 71 0 1146 204 117 0 chr3 169384919 169385228 -58139350 + L1M4 LINE L1 2683 3027 -3119 228 228 0 0 chr3 169385249 169385306 -58139272 + L1ME2 LINE L1 6106 6162 -2 23 0 0 0 chr3 169386715 169386738 -58137840 + AT_rich Low_complexity Low_complexity 1 23 0 323 231 172 15 chr3 169386873 169387007 -58137571 - L1ME4a LINE L1 -2 6119 5965 232 307 15 22 chr3 169387246 169387383 -58137195 - L1ME4a LINE L1 -436 5685 5550 655 230 0 0 chr3 169387383 169387509 -58137069 + MSTD LTR MaLR 1 126 -302 1060 151 6 2 chr3 169387541 169387718 -58136860 + MSTD LTR MaLR 218 626 0 23 0 0 0 chr3 169389249 169389272 -58135306 + AT_rich Low_complexity Low_complexity 1 23 0 1253 277 69 34 chr3 169389536 169389764 -58134814 - L1ME3A LINE L1 -273 5897 5678 854 232 16 0 chr3 169389764 169389949 -58134629 - MER5A DNA MER1_type -1 188 1 1253 277 69 34 chr3 169389949 169390302 -58134276 - L1ME3A LINE L1 -492 5678 5296 495 316 79 48 chr3 169390555 169390910 -58133668 + L2 LINE L2 2567 2932 -382 529 287 46 50 chr3 169390931 169391213 -58133365 + L2 LINE L2 3033 3313 0 25 65 0 0 chr3 169391967 169392013 -58132565 + AT_rich Low_complexity Low_complexity 1 46 0 586 159 100 18 chr3 169392258 169392428 -58132150 + L1MA8 LINE L1 6028 6211 -80 463 317 121 9 chr3 169392857 169393081 -58131497 + LTR33A LTR ERVL 3 251 -272 1045 143 69 25 chr3 169393317 169393562 -58131016 - L1MA8 LINE L1 -5 6286 6031 340 137 82 0 chr3 169393492 169393565 -58131013 - L1MA8 LINE L1 -185 6106 6028 349 326 46 24 chr3 169393791 169394092 -58130486 - L1ME4a LINE L1 -589 5575 5268 560 125 143 0 chr3 169396629 169396741 -58127837 - L1MB7 LINE L1 -9 6175 6048 511 175 92 42 chr3 169396746 169396866 -58127712 + MLT1D LTR MaLR 378 503 -2 21 71 0 0 chr3 169396992 169397034 -58127544 + AT_rich Low_complexity Low_complexity 1 42 0 2375 91 0 0 chr3 169397243 169397551 -58127027 - AluSc SINE Alu 0 309 2 524 158 0 0 chr3 169397558 169397640 -58126938 - tRNA-Leu-CTT tRNA tRNA -3 82 1 18137 89 6 7 chr3 169397984 169401376 -58123202 - L1PA7 LINE L1 0 6154 2768 2024 136 0 0 chr3 169401376 169401678 -58122900 - AluSx SINE Alu -8 304 3 587 248 22 0 chr3 169401691 169401828 -58122750 - MIR SINE MIR -11 251 112 22 56 0 0 chr3 169402777 169402813 -58121765 + AT_rich Low_complexity Low_complexity 1 36 0 343 267 20 0 chr3 169402940 169403041 -58121537 + (CATATA)n Simple_repeat Simple_repeat 6 108 0 501 271 104 56 chr3 169403096 169403546 -58121032 - L1MB7 LINE L1 -439 5682 5266 25 0 0 0 chr3 169403628 169403653 -58120925 + AT_rich Low_complexity Low_complexity 1 25 0 24 0 0 0 chr3 169403758 169403782 -58120796 + AT_rich Low_complexity Low_complexity 1 24 0 457 258 108 45 chr3 169403812 169404165 -58120413 - L1MB7 LINE L1 -1171 4975 4601 247 282 141 0 chr3 169404860 169404938 -58119640 + MIR SINE MIR 53 141 -121 249 380 39 0 chr3 169405174 169405353 -58119225 - L2 LINE L2 -5 3308 3123 21 0 0 0 chr3 169405466 169405487 -58119091 + AT_rich Low_complexity Low_complexity 1 21 0 2054 130 32 0 chr3 169408352 169408668 -58115910 - L1PA16 LINE L1 -9 6157 5832 22 35 0 0 chr3 169409379 169409408 -58115170 + AT_rich Low_complexity Low_complexity 1 29 0 189 0 0 0 chr3 169410464 169410485 -58114093 + (TAA)n Simple_repeat Simple_repeat 2 22 0 3929 151 8 13 chr3 169410771 169411833 -58112745 - L1PA15 LINE L1 -270 5895 4843 3517 202 6 1 chr3 169411844 169412538 -58112040 + L1P LINE L1 3501 4197 -1949 * 19663 180 32 15 chr3 169412528 169416764 -58107814 + L1M1 LINE L1 15 4412 -3153 2015 86 48 0 chr3 169416764 169417065 -58107513 + AluY SINE Alu 1 314 0 19663 180 32 15 chr3 169417065 169419365 -58105213 + L1M1 LINE L1 4412 6670 -895 432 127 42 0 chr3 169419365 169419436 -58105142 - LTR22B LTR ERVK 0 492 419 320 363 12 6 chr3 169419581 169419749 -58104829 + T-rich Low_complexity Low_complexity 4 172 0 * 337 283 5 68 chr3 169419629 169419820 -58104758 + CT-rich Low_complexity Low_complexity 1 179 0 983 75 295 0 chr3 169420031 169420204 -58104374 + LTR12 LTR ERV1 62 285 -429 334 244 11 0 chr3 169420205 169420295 -58104283 + LTR30 LTR ERV1 553 643 -79 2303 101 48 0 chr3 169420297 169420724 -58103854 + LTR12 LTR ERV1 375 714 0 4633 100 20 23 chr3 169420724 169421463 -58103115 + L1MA1 LINE L1 5559 6295 -7 3075 208 11 10 chr3 169421478 169422174 -58102404 + L1 LINE L1 4174 4870 -1276 635 283 176 3 chr3 169423091 169423409 -58101169 + L2 LINE L2 2603 2975 -339 230 246 43 14 chr3 169424745 169424814 -58099764 - MIR SINE MIR -68 194 124 223 356 59 0 chr3 169424946 169425047 -58099531 - MIR SINE MIR -136 126 20 306 0 0 0 chr3 169425741 169425775 -58098803 + (A)n Simple_repeat Simple_repeat 1 34 0 1772 258 64 87 chr3 169426717 169427326 -58097252 - MLT1G LTR MaLR 0 590 1 206 167 21 0 chr3 169427488 169427536 -58097042 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 189 271 21 0 chr3 169427776 169427824 -58096754 + MIR SINE MIR 83 131 -131 22 0 0 0 chr3 169430586 169430608 -58093970 + AT_rich Low_complexity Low_complexity 1 22 0 2655 194 61 55 chr3 169431267 169431988 -58092590 - LTR8A LTR ERV1 -2 725 1 639 278 70 22 chr3 169432570 169432797 -58091781 - MIR SINE MIR -10 252 15 194 61 0 30 chr3 169432996 169433029 -58091549 + (TTTTTG)n Simple_repeat Simple_repeat 5 36 0 433 202 22 0 chr3 169433029 169433118 -58091460 - MIR SINE MIR -26 236 146 24 32 0 0 chr3 169433574 169433605 -58090973 + AT_rich Low_complexity Low_complexity 1 31 0 276 273 0 0 chr3 169433918 169433995 -58090583 + (TA)n Simple_repeat Simple_repeat 1 77 0 27 29 0 0 chr3 169434072 169434106 -58090472 + AT_rich Low_complexity Low_complexity 1 34 0 1691 169 201 3 chr3 169434225 169434574 -58090004 - MER47B DNA MER2_type 0 418 1 23 0 0 0 chr3 169434997 169435020 -58089558 + AT_rich Low_complexity Low_complexity 1 23 0 254 236 25 32 chr3 169435121 169435278 -58089300 + (TA)n Simple_repeat Simple_repeat 1 156 0 711 36 0 0 chr3 169435685 169435769 -58088809 + L1P5 LINE L1 5523 5606 -545 * 3512 106 2 0 chr3 169435768 169436269 -58088309 - L1PBa LINE L1 -5010 1853 1352 * 8299 154 23 11 chr3 169436267 169438626 -58085952 + L1PB1 LINE L1 3572 5967 -184 2194 105 0 3 chr3 169438626 169438921 -58085657 + AluSc SINE Alu 1 294 -15 8299 154 23 11 chr3 169438921 169439109 -58085469 + L1PB1 LINE L1 5967 6151 0 454 96 12 48 chr3 169440010 169440093 -58084485 - MADE1 DNA Mariner 0 80 1 630 225 73 6 chr3 169440138 169440316 -58084262 + MIR SINE MIR 70 259 -3 22 0 0 0 chr3 169441597 169441619 -58082959 + AT_rich Low_complexity Low_complexity 1 22 0 3633 198 81 34 chr3 169442749 169443138 -58081440 - L1MD1 LINE L1 -1 6241 5872 2191 117 3 0 chr3 169443138 169443437 -58081141 - AluSx SINE Alu -12 300 1 3633 198 81 34 chr3 169443437 169443982 -58080596 - L1MD1 LINE L1 -370 5872 5263 1272 242 49 73 chr3 169443979 169444046 -58080532 - L1M4 LINE L1 -816 5330 5263 * 225 0 0 0 chr3 169444046 169444071 -58080507 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 306 0 0 0 chr3 169444070 169444104 -58080474 + (TA)n Simple_repeat Simple_repeat 1 34 0 1272 242 49 73 chr3 169444071 169444103 -58080475 - L1M4 LINE L1 -883 5263 5232 315 0 0 0 chr3 169444103 169444138 -58080440 + (GA)n Simple_repeat Simple_repeat 2 36 0 1960 120 0 0 chr3 169444148 169444414 -58080164 - AluSx SINE Alu -46 266 1 1272 242 49 73 chr3 169444414 169444745 -58079833 - L1M4 LINE L1 -923 5223 4939 195 42 0 0 chr3 169444745 169444769 -58079809 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1272 242 49 73 chr3 169444769 169444985 -58079593 - L1M4 LINE L1 -1207 4939 4719 209 271 21 0 chr3 169444987 169445035 -58079543 + L2 LINE L2 3191 3239 -33 3079 198 86 32 chr3 169445065 169445963 -58078615 - L1MB8 LINE L1 -8 6239 5176 381 248 0 23 chr3 169445991 169446124 -58078454 - L1MB8 LINE L1 -2632 3583 3454 * 3341 156 11 16 chr3 169446122 169446257 -58078321 + L1P LINE L1 4508 4642 -1504 2196 132 0 0 chr3 169446257 169446568 -58078010 - AluSx SINE Alu 0 312 2 3341 156 11 16 chr3 169446568 169447048 -58077530 + L1P LINE L1 4642 5120 -1026 562 240 51 123 chr3 169447179 169447524 -58077054 - L1MB8 LINE L1 -3787 2431 2185 2912 78 29 38 chr3 169447524 169447566 -58077012 - MLT2A1 LTR ERVL 0 444 403 468 0 0 0 chr3 169447566 169447618 -58076960 + (TA)n Simple_repeat Simple_repeat 2 53 0 2912 78 29 38 chr3 169447618 169448023 -58076555 - MLT2A1 LTR ERVL -41 403 1 562 240 51 123 chr3 169448023 169448448 -58076130 - L1MB8 LINE L1 -4033 2185 1731 223 286 16 0 chr3 169448808 169448871 -58075707 + (CATATA)n Simple_repeat Simple_repeat 6 69 0 275 287 99 0 chr3 169452590 169452691 -58071887 - MIR SINE MIR -71 191 81 275 341 56 56 chr3 169452954 169453133 -58071445 + MIR SINE MIR 5 183 -79 302 281 62 86 chr3 169454742 169454952 -58069626 - L2 LINE L2 -4 3309 3105 336 281 79 7 chr3 169455323 169455462 -58069116 + MIR SINE MIR 53 201 -61 328 316 52 35 chr3 169455750 169455924 -58068654 + MIR SINE MIR 81 257 -5 455 326 40 14 chr3 169457043 169457203 -58067375 + MIR3 SINE MIR 7 171 -37 279 0 0 0 chr3 169458416 169458447 -58066131 + (TG)n Simple_repeat Simple_repeat 2 32 0 4030 215 46 54 chr3 169458496 169459304 -58065274 - L1MD1 LINE L1 -116 6126 5313 550 89 13 0 chr3 169459304 169459383 -58065195 + MADE1 DNA Mariner 1 80 0 4030 215 46 54 chr3 169459383 169459953 -58064625 - L1MD1 LINE L1 -929 5313 4740 1904 147 84 3 chr3 169459953 169460287 -58064291 + MER46B DNA MER2_type 1 236 0 4030 215 46 54 chr3 169460287 169461043 -58063535 - L1MD1 LINE L1 -1502 4740 4000 1591 175 84 8 chr3 169461052 169461423 -58063155 + Charlie1b DNA MER1_type 94 492 -31 20588 55 6 4 chr3 169461432 169464876 -58059702 - L1PA6 LINE L1 -13 6141 2689 9256 58 1 0 chr3 169464876 169466054 -58058524 + L1PA6 LINE L1 1527 2705 -3441 8227 11 0 0 chr3 169466189 169467114 -58057464 - HERVK LTR ERVK -3325 3918 2994 229 235 0 61 chr3 169467155 169467270 -58057308 + C-rich Low_complexity Low_complexity 1 108 0 13284 10 3 0 chr3 169467402 169468900 -58055678 - HERVK LTR ERVK -4332 2911 1409 12487 15 0 1 chr3 169469000 169470416 -58054162 - HERVK LTR ERVK -5828 1415 1 361 296 79 13 chr3 169470645 169470797 -58053781 - L2 LINE L2 -5 3308 3147 575 225 0 0 chr3 169470833 169470944 -58053634 + FLAM_C SINE Alu 1 111 -32 32 26 0 0 chr3 169470951 169470990 -58053588 + AT_rich Low_complexity Low_complexity 1 39 0 189 0 0 0 chr3 169471718 169471739 -58052839 + (TTG)n Simple_repeat Simple_repeat 2 22 0 2200 85 0 0 chr3 169472267 169472561 -58052017 - L1PA6 LINE L1 -1 6153 5860 186 160 20 60 chr3 169472611 169472661 -58051917 - L2 LINE L2 -2 3311 3264 920 196 97 32 chr3 169473074 169473415 -58051163 - Charlie1b DNA MER1_type -1 522 160 5313 66 1 38 chr3 169473415 169474129 -58050449 + LTR12 LTR ERV1 1 688 0 34863 102 13 10 chr3 169474142 169479366 -58045212 + HERV9 LTR ERV1 40 4980 -3419 1910 96 21 26 chr3 169479342 169479762 -58044816 + HERV17 LTR ERV1 1262 3446 -3203 * 4876 83 2 0 chr3 169479757 169480399 -58044179 + HERV17 LTR ERV1 7757 8399 0 5932 79 35 32 chr3 169480399 169481220 -58043358 + LTR12 LTR ERV1 1 824 -2 715 236 25 6 chr3 169481227 169481384 -58043194 - Charlie1b DNA MER1_type -361 162 3 2755 223 51 33 chr3 169481524 169482500 -58042078 + L1MD2 LINE L1 4205 5218 -1141 7739 23 0 0 chr3 169482500 169483647 -58040931 + L1PA3 LINE L1 5002 6152 -3 2755 223 51 33 chr3 169483647 169484270 -58040308 + L1MD2 LINE L1 5218 5828 -531 1077 186 4 52 chr3 169484271 169484502 -58040076 - AluJo SINE Alu -15 297 78 2202 219 45 8 chr3 169484502 169485009 -58039569 + L1MD2 LINE L1 5814 6339 -20 30 27 0 0 chr3 169486151 169486188 -58038390 + AT_rich Low_complexity Low_complexity 1 37 0 1143 208 12 37 chr3 169486596 169486841 -58037737 + AluJo SINE Alu 42 280 -32 24 53 0 0 chr3 169486980 169487018 -58037560 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr3 169487038 169487060 -58037518 + AT_rich Low_complexity Low_complexity 1 22 0 664 187 16 8 chr3 169488614 169488737 -58035841 + FLAM_C SINE Alu 1 124 -19 969 256 71 64 chr3 169488886 169489336 -58035242 + LTR16A1 LTR ERVL 1 453 -4 1944 144 0 0 chr3 169490615 169490899 -58033679 + AluSg SINE Alu 1 284 -26 21 0 0 0 chr3 169490899 169490920 -58033658 + AT_rich Low_complexity Low_complexity 1 21 0 382 256 166 93 chr3 169491138 169491548 -58033030 - MLT1H LTR MaLR 0 549 110 259 107 67 0 chr3 169491735 169491810 -58032768 + (TA)n Simple_repeat Simple_repeat 1 80 0 27 29 0 0 chr3 169492253 169492287 -58032291 + AT_rich Low_complexity Low_complexity 1 34 0 27 81 0 0 chr3 169492794 169492856 -58031722 + AT_rich Low_complexity Low_complexity 1 62 0 1119 123 0 67 chr3 169493055 169493234 -58031344 + AluSg SINE Alu 1 167 -143 494 352 16 11 chr3 169493239 169493421 -58031157 + L1ME4a LINE L1 236 418 -5978 207 162 0 0 chr3 169493532 169493569 -58031009 + (TA)n Simple_repeat Simple_repeat 1 37 0 473 70 0 14 chr3 169493637 169493708 -58030870 + (TA)n Simple_repeat Simple_repeat 1 70 0 273 270 10 20 chr3 169493784 169493884 -58030694 + L1ME4a LINE L1 586 684 -5712 5238 181 47 40 chr3 169493884 169494538 -58030040 + L1MC1 LINE L1 4715 5364 -969 1896 181 19 16 chr3 169494538 169494902 -58029676 - MLT1A1 LTR MaLR 0 365 1 5238 181 47 40 chr3 169494902 169495854 -58028724 + L1MC1 LINE L1 5364 6333 0 2372 222 66 74 chr3 169495914 169495975 -58028603 + L1ME4a LINE L1 2607 2667 -3548 1476 126 0 0 chr3 169495975 169496205 -58028373 + AluSg/x SINE Alu 77 306 0 2372 222 66 74 chr3 169496205 169497384 -58027194 + L1ME4a LINE L1 2667 4053 -2162 1158 283 71 24 chr3 169497605 169498179 -58026399 + L1ME4a LINE L1 5368 5980 -210 367 239 94 31 chr3 169498299 169498458 -58026120 + L1M4 LINE L1 3281 3449 -2697 1828 180 26 0 chr3 169498478 169498789 -58025789 + MER2 DNA MER2_type 2 320 -25 348 24 0 0 chr3 169498797 169498838 -58025740 + (TG)n Simple_repeat Simple_repeat 2 42 0 205 256 0 0 chr3 169499293 169499332 -58025246 + (TG)n Simple_repeat Simple_repeat 1 39 0 * 226 204 0 0 chr3 169499331 169499375 -58025203 + GA-rich Low_complexity Low_complexity 1 44 0 1528 83 9 0 chr3 169499445 169499662 -58024916 - L1PA13 LINE L1 0 6163 5945 25 0 0 0 chr3 169500410 169500435 -58024143 + AT_rich Low_complexity Low_complexity 1 25 0 377 345 80 27 chr3 169500481 169501046 -58023532 + L1MEc LINE L1 35 676 -5720 818 149 8 15 chr3 169501068 169501202 -58023376 + FLAM_C SINE Alu 1 133 0 401 355 7 7 chr3 169501299 169501440 -58023138 + L2 LINE L2 3167 3307 -6 22 0 0 0 chr3 169501457 169501479 -58023099 + AT_rich Low_complexity Low_complexity 1 22 0 467 167 0 0 chr3 169501580 169501652 -58022926 - tRNA-His-CAC tRNA tRNA -3 72 1 500 212 82 27 chr3 169502999 169503145 -58021433 + Charlie8 DNA MER1_type 107 260 -2157 395 316 0 0 chr3 169503409 169503507 -58021071 - LTR33 LTR ERVL -306 215 118 1855 333 78 19 chr3 169503518 169504739 -58019839 - MERVL LTR ERVL -519 4966 3674 1205 228 156 19 chr3 169505596 169506025 -58018553 - MER113 DNA MER1_type? -33 488 1 217 254 0 17 chr3 169506223 169506282 -58018296 + (CATATA)n Simple_repeat Simple_repeat 2 59 0 2147 128 0 0 chr3 169507203 169507507 -58017071 + AluSx SINE Alu 1 304 -8 30 45 0 0 chr3 169507885 169507929 -58016649 + AT_rich Low_complexity Low_complexity 1 44 0 28 29 0 0 chr3 169509026 169509061 -58015517 + AT_rich Low_complexity Low_complexity 1 35 0 351 286 246 6 chr3 169509072 169509247 -58015331 - MIR SINE MIR 0 262 46 325 281 53 0 chr3 169509533 169509647 -58014931 - LTR33A LTR ERVL 0 523 404 375 209 105 115 chr3 169509781 169509972 -58014606 - LTR33A LTR ERVL -333 190 2 1632 138 28 7 chr3 169510416 169510706 -58013872 - L1MB7 LINE L1 -28 6156 5861 5821 159 1 21 chr3 169510721 169512446 -58012132 - L1PB1 LINE L1 -1 6150 4457 2130 123 0 0 chr3 169512458 169512775 -58011803 - AluSx SINE Alu 0 317 1 26 0 0 0 chr3 169512786 169512812 -58011766 + AT_rich Low_complexity Low_complexity 1 26 0 345 145 0 0 chr3 169512879 169512941 -58011637 + (TA)n Simple_repeat Simple_repeat 2 63 0 418 273 48 55 chr3 169513121 169513286 -58011292 + HAL1 LINE L1 1220 1383 -1124 403 291 21 21 chr3 169513451 169513592 -58010986 + HAL1 LINE L1 1430 1570 -937 225 236 0 34 chr3 169513592 169513681 -58010897 + (CATATA)n Simple_repeat Simple_repeat 3 88 0 300 336 17 0 chr3 169514440 169514556 -58010022 - L1ME4a LINE L1 -237 5884 5767 5414 134 55 57 chr3 169514559 169515675 -58008903 + L1MA9 LINE L1 5198 6304 -8 23 68 0 0 chr3 169515921 169515965 -58008613 + AT_rich Low_complexity Low_complexity 1 44 0 319 321 79 16 chr3 169516052 169516242 -58008336 - HAL1 LINE L1 -744 1763 1562 214 189 75 38 chr3 169516532 169516585 -58007993 + L2 LINE L2 3258 3312 -1 187 326 0 0 chr3 169517088 169517137 -58007441 + L2 LINE L2 3265 3313 0 338 61 20 0 chr3 169517671 169517720 -58006858 + (TG)n Simple_repeat Simple_repeat 1 50 0 401 54 18 0 chr3 169517720 169517776 -58006802 + (GA)n Simple_repeat Simple_repeat 2 58 0 216 0 0 0 chr3 169517851 169517875 -58006703 + (T)n Simple_repeat Simple_repeat 1 24 0 511 351 16 11 chr3 169517924 169518112 -58006466 - MIR3 SINE MIR -2 206 18 1350 92 17 59 chr3 169519580 169519818 -58004760 - L1PA10 LINE L1 -1 6167 5940 482 284 115 83 chr3 169520349 169520588 -58003990 + MLT1J2 LTR MaLR 21 278 -172 3699 86 318 0 chr3 169520588 169521214 -58003364 + LTR12 LTR ERV1 1 825 -1 482 284 115 83 chr3 169521214 169521347 -58003231 + MLT1J2 LTR MaLR 278 405 -45 2162 74 3 20 chr3 169522582 169522878 -58001700 + AluY SINE Alu 3 293 -18 274 176 40 14 chr3 169522878 169522952 -58001626 + GA-rich Low_complexity Low_complexity 2 77 0 1503 245 116 42 chr3 169523155 169524058 -58000520 + L1ME3A LINE L1 2644 3613 -2533 2044 281 72 26 chr3 169524067 169524933 -57999645 + L1ME3A LINE L1 4215 5145 -1001 1747 104 0 0 chr3 169524933 169525155 -57999423 + AluSg SINE Alu 1 222 -88 2044 281 72 26 chr3 169525155 169525407 -57999171 + L1ME3A LINE L1 5145 5384 -762 1336 138 5 0 chr3 169525408 169525603 -57998975 + AluSg/x SINE Alu 87 282 -30 236 183 22 29 chr3 169525616 169525753 -57998825 + (TA)n Simple_repeat Simple_repeat 2 137 0 379 101 7 68 chr3 169525816 169525964 -57998614 + (TA)n Simple_repeat Simple_repeat 2 140 0 1624 263 78 32 chr3 169525982 169526728 -57997850 + L1ME3A LINE L1 5386 6165 -5 26 64 0 0 chr3 169526728 169526775 -57997803 + AT_rich Low_complexity Low_complexity 1 47 0 21 36 0 0 chr3 169526917 169526945 -57997633 + AT_rich Low_complexity Low_complexity 1 28 0 233 274 11 11 chr3 169527691 169527786 -57996792 + T-rich Low_complexity Low_complexity 3 97 0 243 189 0 38 chr3 169528486 169528539 -57996039 + L2 LINE L2 3200 3250 -22 26 30 0 0 chr3 169528617 169528650 -57995928 + AT_rich Low_complexity Low_complexity 1 33 0 257 340 67 0 chr3 169528672 169528822 -57995756 + MIR SINE MIR 103 262 0 430 230 119 15 chr3 169529975 169530008 -57994570 + MIR SINE MIR 36 64 -182 2641 142 25 74 chr3 169530008 169530601 -57993977 + L1MB8 LINE L1 5614 6177 -1 430 230 119 15 chr3 169530601 169530700 -57993878 + MIR SINE MIR 64 182 -64 2026 141 3 3 chr3 169530745 169531057 -57993521 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 169531269 169531290 -57993288 + AT_rich Low_complexity Low_complexity 1 21 0 1894 205 42 14 chr3 169531361 169532327 -57992251 + L1ME1 LINE L1 4756 5798 -368 1131 123 118 0 chr3 169532331 169532526 -57992052 + MLT2D LTR ERVL 5 222 -192 3523 173 15 8 chr3 169532529 169533143 -57991435 + L1MA3 LINE L1 24 641 -6924 2373 93 0 0 chr3 169533143 169533444 -57991134 - AluSg SINE Alu -9 301 1 15384 169 35 11 chr3 169533445 169535898 -57988680 + L1MA3 LINE L1 813 3206 -4518 180 77 0 0 chr3 169535898 169535924 -57988654 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 15384 169 35 11 chr3 169535924 169540208 -57984370 + L1MA3 LINE L1 3206 7724 0 875 174 108 38 chr3 169540213 169540385 -57984193 + MLT2D LTR ERVL 188 379 -35 744 71 0 0 chr3 169540385 169540484 -57984094 + (TGGA)n Simple_repeat Simple_repeat 3 101 0 875 174 108 38 chr3 169540484 169540523 -57984055 + MLT2D LTR ERVL 379 414 0 371 186 53 4 chr3 169540523 169540642 -57983936 + L1ME1 LINE L1 5794 5921 -243 1123 218 44 94 chr3 169540644 169540712 -57983866 - MER2 DNA MER2_type 0 345 275 3591 127 31 3 chr3 169540712 169541295 -57983283 + L1PB1 LINE L1 5551 6149 -2 1123 218 44 94 chr3 169541295 169541589 -57982989 - MER2 DNA MER2_type -70 275 1 897 228 20 49 chr3 169541589 169541835 -57982743 + L1ME1 LINE L1 5919 6157 -9 692 270 108 63 chr3 169541863 169542242 -57982336 - MLT1J LTR MaLR -8 503 102 192 40 0 0 chr3 169542242 169542267 -57982311 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 692 270 108 63 chr3 169542267 169542302 -57982276 - MLT1J LTR MaLR -409 102 70 230 282 14 14 chr3 169542399 169542470 -57982108 + L2 LINE L2 3243 3313 0 26 0 0 0 chr3 169542967 169542993 -57981585 + AT_rich Low_complexity Low_complexity 1 26 0 188 256 188 94 chr3 169543231 169543348 -57981230 - MIR3 SINE MIR -11 197 70 207 0 0 0 chr3 169543769 169543792 -57980786 + (A)n Simple_repeat Simple_repeat 1 23 0 503 43 116 0 chr3 169544633 169544702 -57979876 + MADE1 DNA Mariner 4 80 0 680 273 34 11 chr3 169545060 169545236 -57979342 - MLT1K LTR MaLR -313 275 96 260 313 70 9 chr3 169545480 169545595 -57978983 - MIR3 SINE MIR -4 204 83 21 57 0 0 chr3 169547284 169547319 -57977259 + AT_rich Low_complexity Low_complexity 1 35 0 221 304 0 61 chr3 169548462 169548610 -57975968 + CT-rich Low_complexity Low_complexity 4 142 0 306 106 0 0 chr3 169550404 169550451 -57974127 + (T)n Simple_repeat Simple_repeat 1 47 0 22 0 0 0 chr3 169550811 169550833 -57973745 + AT_rich Low_complexity Low_complexity 1 22 0 1896 196 97 35 chr3 169551194 169551708 -57972870 + LTR10A LTR ERV1 2 547 -62 245 230 0 54 chr3 169552687 169552761 -57971817 - Charlie8 DNA MER1_type -2241 176 107 305 281 136 63 chr3 169553159 169553380 -57971198 - MER102b DNA MER1_type 0 341 105 221 254 68 0 chr3 169555271 169555330 -57969248 - MIR SINE MIR -14 248 186 364 357 0 0 chr3 169555481 169555593 -57968985 - MIR3 SINE MIR -9 199 88 420 240 0 40 chr3 169557925 169558025 -57966553 + MER5A DNA MER1_type 9 104 -85 233 250 50 38 chr3 169558564 169558644 -57965934 + MIR3 SINE MIR 117 197 -11 236 292 0 0 chr3 169560094 169560159 -57964419 + GA-rich Low_complexity Low_complexity 3 67 0 651 277 46 84 chr3 169560179 169560572 -57964006 + LTR16A LTR ERVL 1 378 -72 1437 38 0 43 chr3 169560647 169560831 -57963747 - AluY SINE Alu -15 296 121 189 0 0 0 chr3 169560861 169560882 -57963696 + (A)n Simple_repeat Simple_repeat 1 21 0 226 233 0 0 chr3 169560928 169560971 -57963607 + CT-rich Low_complexity Low_complexity 2 44 0 182 36 0 36 chr3 169561389 169561417 -57963161 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 228 313 47 0 chr3 169565330 169565394 -57959184 + L2 LINE L2 3145 3211 -61 225 301 30 30 chr3 169565634 169565800 -57958778 - L1ME4a LINE L1 -67 6054 5889 303 300 48 48 chr3 169566180 169566390 -57958188 - L1ME4a LINE L1 -390 5731 5522 5027 171 17 41 chr3 169567050 169567808 -57956770 - L1PA16 LINE L1 -2 6164 5389 2280 108 3 0 chr3 169567808 169568103 -57956475 - AluSc SINE Alu -13 296 1 5027 171 17 41 chr3 169568103 169569159 -57955419 - L1PA16 LINE L1 -777 5389 4397 985 283 63 37 chr3 169571834 169572216 -57952362 + MLT1J2 LTR MaLR 59 450 0 230 328 10 125 chr3 169572218 169572410 -57952168 + L2 LINE L2 2852 3021 -251 22 56 0 0 chr3 169572956 169572992 -57951586 + AT_rich Low_complexity Low_complexity 1 36 0 212 159 318 0 chr3 169573019 169573082 -57951496 + MIR SINE MIR 175 257 -5 290 95 24 36 chr3 169573424 169573508 -57951070 + (TTATA)n Simple_repeat Simple_repeat 4 86 0 215 330 35 69 chr3 169574516 169574719 -57949859 - L2 LINE L2 -182 3090 2895 1495 304 52 20 chr3 169575989 169576917 -57947661 + HERVL LTR ERVL 1759 2763 -2233 376 327 139 30 chr3 169579206 169579371 -57945207 + MER91A DNA MER1_type 2 184 -12 617 256 131 35 chr3 169579534 169579733 -57944845 + MIR SINE MIR 32 249 -13 198 71 0 0 chr3 169579756 169579784 -57944794 + (TGGA)n Simple_repeat Simple_repeat 3 30 0 294 194 0 0 chr3 169580505 169580572 -57944006 + (CA)n Simple_repeat Simple_repeat 1 67 0 472 256 31 70 chr3 169580891 169581020 -57943558 - L2 LINE L2 -8 3305 3182 243 0 0 0 chr3 169581061 169581088 -57943490 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1602 186 93 71 chr3 169581864 169582315 -57942263 - MLT1C LTR MaLR 0 467 7 849 231 167 67 chr3 169582559 169582931 -57941647 + MLT1H LTR MaLR 141 549 0 716 76 0 0 chr3 169583025 169583117 -57941461 - AluY SINE Alu -184 127 36 1067 73 0 0 chr3 169583117 169583253 -57941325 + AluSg/x SINE Alu 169 304 -8 2315 238 62 34 chr3 169583527 169584170 -57940408 - MLT2F LTR ERVL 0 663 3 523 217 98 76 chr3 169584170 169584250 -57940328 - ERVL-F LTR ERVL -7 5757 5680 2085 110 0 3 chr3 169584250 169584559 -57940019 - AluSx SINE Alu 0 308 1 523 217 98 76 chr3 169584559 169584660 -57939918 - ERVL-F LTR ERVL -84 5680 5570 23 54 0 0 chr3 169585752 169585789 -57938789 + AT_rich Low_complexity Low_complexity 1 37 0 432 277 170 0 chr3 169585793 169585934 -57938644 - MIR SINE MIR -97 165 1 228 306 119 22 chr3 169585959 169586145 -57938433 - MIR SINE MIR -42 220 19 419 267 61 8 chr3 169586422 169586553 -57938025 + MIR3 SINE MIR 12 149 -59 284 276 0 0 chr3 169587715 169587773 -57936805 - L2 LINE L2 -20 3293 3236 702 276 135 75 chr3 169588864 169589332 -57935246 - LTR33 LTR ERVL -1 520 25 227 237 66 13 chr3 169589542 169589618 -57934960 + L1ME3 LINE L1 5668 5747 -2061 285 79 0 0 chr3 169589623 169589661 -57934917 + tRNA-Gly-GGA tRNA tRNA 1 38 -37 502 285 20 20 chr3 169589661 169589861 -57934717 + L1ME3 LINE L1 5740 5939 -231 352 291 68 68 chr3 169589892 169590129 -57934449 + L1ME3 LINE L1 5924 6160 -2 1731 37 0 9 chr3 169591067 169591281 -57933297 - L1PA3 LINE L1 -3 6152 5941 828 59 0 0 chr3 169591281 169591383 -57933195 + L1PA3 LINE L1 5849 5950 -205 208 273 0 45 chr3 169591417 169591483 -57933095 + L2 LINE L2 2886 2948 -365 259 255 102 70 chr3 169592256 169592413 -57932165 + MIR SINE MIR 33 194 -68 32 0 0 0 chr3 169592649 169592681 -57931897 + AT_rich Low_complexity Low_complexity 1 32 0 195 330 96 24 chr3 169592711 169592920 -57931658 + L2 LINE L2 1701 1924 -1390 1138 223 46 23 chr3 169592981 169593286 -57931292 + MER58B DNA MER1_type 22 333 -8 214 339 0 0 chr3 169593361 169593420 -57931158 + MIR SINE MIR 162 220 -42 269 350 198 16 chr3 169593444 169593959 -57930619 + L2 LINE L2 2067 2675 -639 528 245 41 27 chr3 169594098 169594245 -57930333 - L2 LINE L2 0 3313 3165 25 31 0 0 chr3 169594711 169594743 -57929835 + AT_rich Low_complexity Low_complexity 1 32 0 188 316 83 23 chr3 169595072 169595205 -57929373 + L3 LINE CR1 200 340 -1237 220 195 52 26 chr3 169597193 169597270 -57927308 + (TTTG)n Simple_repeat Simple_repeat 4 82 0 441 150 233 8 chr3 169597355 169597475 -57927103 - MIR SINE MIR -42 220 74 790 265 99 22 chr3 169598624 169599036 -57925542 - L1ME4a LINE L1 -40 6081 5638 229 213 0 33 chr3 169599059 169599120 -57925458 + L1MC4 LINE L1 6643 6701 -1341 226 243 89 112 chr3 169599152 169599366 -57925212 - L1ME4a LINE L1 -589 5532 5324 323 335 162 0 chr3 169599769 169599960 -57924618 - MIR SINE MIR -8 254 33 2083 109 3 33 chr3 169600206 169600509 -57924069 - AluSc SINE Alu -15 294 1 185 373 40 0 chr3 169600863 169600938 -57923640 + L2 LINE L2 3193 3270 -2 664 286 71 13 chr3 169601893 169602117 -57922461 + MIR SINE MIR 26 262 0 522 198 0 0 chr3 169602361 169602467 -57922111 - L1MB7 LINE L1 -5 6179 6074 19852 36 4 3 chr3 169602549 169605778 -57918800 - L1PA3 LINE L1 -3 6152 2920 181 161 161 32 chr3 169605781 169605843 -57918735 - L2 LINE L2 -61 3211 3142 28 48 0 0 chr3 169606046 169606088 -57918490 + AT_rich Low_complexity Low_complexity 1 42 0 275 136 0 34 chr3 169606243 169606302 -57918276 - L1MB8 LINE L1 -1 6177 6121 2299 166 15 0 chr3 169606302 169606694 -57917884 + MER57A LTR ERV1 6 403 0 3435 200 74 21 chr3 169606694 169608330 -57916248 - L1MB8 LINE L1 -54 6124 4413 203 0 37 0 chr3 169608331 169608358 -57916220 + (TTTTG)n Simple_repeat Simple_repeat 4 31 0 1905 121 0 65 chr3 169608368 169608674 -57915904 - AluSg SINE Alu -22 288 3 1942 228 35 2 chr3 169609043 169609534 -57915044 - L1MB8 LINE L1 -1761 4385 3879 234 200 33 0 chr3 169609552 169609612 -57914966 - L1MA4 LINE L1 -2 6298 6237 847 197 38 0 chr3 169609704 169609887 -57914691 - L1MA4 LINE L1 -42 6258 6069 * 1345 206 38 3 chr3 169609881 169610172 -57914406 - L1MB8 LINE L1 -2292 3854 3554 183 266 193 18 chr3 169612290 169612399 -57912179 + MIR3 SINE MIR 1 128 -80 2267 107 3 0 chr3 169614756 169615055 -57909523 - AluSx SINE Alu -12 300 1 21 71 0 0 chr3 169615632 169615674 -57908904 + AT_rich Low_complexity Low_complexity 1 42 0 489 304 135 0 chr3 169616037 169616185 -57908393 + MER5A DNA MER1_type 20 187 -2 702 277 72 20 chr3 169616257 169616506 -57908072 - MIR SINE MIR 0 262 1 342 138 62 12 chr3 169616743 169616823 -57907755 + L1MA10 LINE L1 6251 6334 0 1510 144 49 63 chr3 169616860 169617171 -57907407 + AluJb SINE Alu 3 309 0 45 34 0 0 chr3 169618475 169618534 -57906044 + AT_rich Low_complexity Low_complexity 1 59 0 765 261 138 41 chr3 169619408 169619945 -57904633 + L1MC4a LINE L1 5260 5848 -1960 247 271 14 0 chr3 169620019 169620089 -57904489 + (TATATG)n Simple_repeat Simple_repeat 4 74 0 846 174 103 31 chr3 169622716 169622911 -57901667 - MER3 DNA MER1_type 0 209 1 23 0 0 0 chr3 169623437 169623460 -57901118 + AT_rich Low_complexity Low_complexity 1 23 0 2419 113 95 3 chr3 169623503 169623893 -57900685 + MSTB LTR MaLR 1 426 0 22 35 0 0 chr3 169624477 169624506 -57900072 + AT_rich Low_complexity Low_complexity 1 29 0 216 97 0 0 chr3 169624507 169624538 -57900040 + (CAGA)n Simple_repeat Simple_repeat 2 32 0 1632 190 3 14 chr3 169624540 169624830 -57899748 - AluJo SINE Alu -25 287 1 195 42 0 0 chr3 169626099 169626123 -57898455 + (TA)n Simple_repeat Simple_repeat 2 25 0 935 260 210 20 chr3 169626908 169627308 -57897270 - L2 LINE L2 -5 3308 2833 23 0 0 0 chr3 169628656 169628679 -57895899 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr3 169629748 169629769 -57894809 + (TAAAAA)n Simple_repeat Simple_repeat 2 22 0 277 264 149 75 chr3 169629988 169630189 -57894389 - MIR SINE MIR 0 262 47 392 280 210 7 chr3 169632461 169632604 -57891974 - MER5A DNA MER1_type -1 188 17 194 0 39 0 chr3 169633037 169633063 -57891515 + (CA)n Simple_repeat Simple_repeat 2 28 0 240 376 30 0 chr3 169634101 169634202 -57890376 - MIR SINE MIR -111 151 48 4148 202 70 9 chr3 169634202 169635174 -57889404 + L1MEc LINE L1 35 1065 -5331 28 48 0 0 chr3 169636103 169636145 -57888433 + AT_rich Low_complexity Low_complexity 1 42 0 203 207 0 69 chr3 169636697 169636755 -57887823 + MIR3 SINE MIR 107 160 -48 385 304 96 47 chr3 169636758 169637080 -57887498 + MER102b DNA MER1_type 4 341 0 2160 90 0 11 chr3 169638286 169638564 -57886014 - AluSx SINE Alu -37 275 1 2337 92 0 0 chr3 169638996 169639288 -57885290 - AluSg SINE Alu -18 292 1 912 219 18 45 chr3 169640662 169640886 -57883692 - MER20 DNA MER1_type 0 219 2 351 252 185 0 chr3 169640984 169641103 -57883475 + MIR SINE MIR 109 249 -13 320 331 48 7 chr3 169642939 169643084 -57881494 - MIR SINE MIR -105 157 7 1165 160 11 0 chr3 169643447 169643634 -57880944 - MER5A DNA MER1_type 0 189 1 1250 169 80 3 chr3 169643679 169643980 -57880598 + MER33 DNA MER1_type 1 324 0 2853 3 0 0 chr3 169645515 169645821 -57878757 - AluYa5 SINE Alu -5 306 1 334 287 43 0 chr3 169645855 169645949 -57878629 - MIR SINE MIR -77 131 34 22 35 0 0 chr3 169647027 169647056 -57877522 + AT_rich Low_complexity Low_complexity 1 29 0 357 325 67 35 chr3 169648164 169648447 -57876131 + L1MEd LINE L1 635 926 -5193 450 307 32 73 chr3 169649306 169649540 -57875038 - MIR SINE MIR -11 251 19 266 322 153 8 chr3 169650298 169650416 -57874162 + L2 LINE L2 3138 3272 0 338 341 60 48 chr3 169651685 169651858 -57872720 - L2 LINE L2 -2 3270 3092 2146 137 0 0 chr3 169651858 169652157 -57872421 + AluSx SINE Alu 1 299 -13 338 341 60 48 chr3 169652157 169652232 -57872346 - L2 LINE L2 -180 3092 3019 209 132 26 0 chr3 169655674 169655712 -57868866 + (TA)n Simple_repeat Simple_repeat 2 40 0 25 31 0 0 chr3 169655749 169655781 -57868797 + AT_rich Low_complexity Low_complexity 1 32 0 22 0 0 0 chr3 169655854 169655876 -57868702 + AT_rich Low_complexity Low_complexity 1 22 0 601 298 119 13 chr3 169656082 169656619 -57867959 - L1ME4a LINE L1 -3 6118 5525 1712 171 0 13 chr3 169656659 169656957 -57867621 - AluJo SINE Alu -18 294 1 38 0 0 0 chr3 169657329 169657367 -57867211 + AT_rich Low_complexity Low_complexity 1 38 0 2192 114 0 0 chr3 169657563 169657898 -57866680 - AluSx SINE Alu 0 339 5 2244 85 7 3 chr3 169658543 169658888 -57865690 - AluSq SINE Alu 0 347 2 676 305 56 12 chr3 169662143 169662392 -57862186 - MIR SINE MIR -1 261 2 1240 117 0 0 chr3 169663364 169663535 -57861043 + AluSg/x SINE Alu 137 307 -5 1128 167 5 20 chr3 169663552 169663756 -57860822 + MER20 DNA MER1_type 11 211 -8 234 0 0 0 chr3 169665067 169665093 -57859485 + (CA)n Simple_repeat Simple_repeat 2 27 0 1726 206 93 31 chr3 169666049 169666563 -57858015 - LTR10A LTR ERV1 -62 547 2 22 0 0 0 chr3 169666923 169666945 -57857633 + AT_rich Low_complexity Low_complexity 1 22 0 2521 33 0 13 chr3 169667196 169667496 -57857082 + AluY SINE Alu 1 296 -15 545 277 46 84 chr3 169667571 169667964 -57856614 - LTR16A LTR ERVL -72 378 1 233 269 0 0 chr3 169667984 169668036 -57856542 + CT-rich Low_complexity Low_complexity 1 52 0 231 250 50 38 chr3 169669500 169669580 -57854998 - MIR3 SINE MIR -11 197 117 426 240 0 40 chr3 169670119 169670219 -57854359 - MER5A DNA MER1_type -85 104 9 366 357 0 0 chr3 169672547 169672659 -57851919 + MIR3 SINE MIR 88 199 -9 221 254 68 0 chr3 169672810 169672869 -57851709 + MIR SINE MIR 186 248 -14 6834 68 2 2 chr3 169673443 169674666 -57849912 + L1P2 LINE L1 4406 5627 -527 266 322 153 8 chr3 169675037 169675155 -57849423 + L2 LINE L2 3138 3272 0 5468 46 4 7 chr3 169675206 169675895 -57848683 + L1PA5 LINE L1 5465 6151 -3 221 355 0 0 chr3 169676014 169676090 -57848488 - L2 LINE L2 -301 2971 2896 2848 118 128 0 chr3 169676169 169676670 -57847908 - MER34B LTR ERV1 0 565 1 3774 211 49 31 chr3 169676670 169676887 -57847691 - MER34B-int LTR ERV1 0 6331 6119 261 0 0 0 chr3 169676887 169676916 -57847662 + (AACTG)n Simple_repeat Simple_repeat 2 30 0 3774 211 49 31 chr3 169676916 169677926 -57846652 - MER34B-int LTR ERV1 -212 6119 3813 1501 179 27 19 chr3 169677935 169678198 -57846380 - AluJo SINE Alu -47 265 1 543 177 69 155 chr3 169678198 169678475 -57846103 - MER31-int LTR ERV1 -1985 2951 2787 2249 110 0 0 chr3 169678480 169678779 -57845799 + AluSg SINE Alu 1 299 -11 312 319 0 0 chr3 169680060 169680226 -57844352 + C-rich Low_complexity Low_complexity 1 166 0 1734 238 46 10 chr3 169680620 169681137 -57843441 + L1MB8 LINE L1 5643 6178 0 211 333 0 0 chr3 169681346 169681397 -57843181 - L2 LINE L2 -6 3266 3216 200 222 16 48 chr3 169681937 169682000 -57842578 + MIR SINE MIR 191 251 -11 2276 101 10 0 chr3 169682297 169682595 -57841983 + AluSp SINE Alu 1 301 -12 1655 176 32 11 chr3 169682944 169683381 -57841197 + L1 LINE L1 1670 2115 -4734 * 2388 236 26 20 chr3 169683378 169684117 -57840461 + L1 LINE L1 4382 5124 -1724 21 0 0 0 chr3 169684257 169684278 -57840300 + AT_rich Low_complexity Low_complexity 1 21 0 345 356 43 25 chr3 169684608 169684771 -57839807 + MIR SINE MIR 19 184 -78 368 309 20 20 chr3 169685701 169685853 -57838725 + L1MEc LINE L1 1562 1713 -4683 2670 168 8 9 chr3 169685855 169686603 -57837975 + L1PA16 LINE L1 5007 5754 -551 1396 143 12 20 chr3 169686707 169686958 -57837620 + L1PA16 LINE L1 5914 6162 -4 1818 115 53 36 chr3 169686990 169687294 -57837284 + AluSc SINE Alu 1 309 0 462 18 0 0 chr3 169687662 169687717 -57836861 + (TCTA)n Simple_repeat Simple_repeat 2 56 0 225 211 0 0 chr3 169687868 169687925 -57836653 + (CCAA)n Simple_repeat Simple_repeat 4 60 0 7938 153 20 11 chr3 169688351 169689810 -57834768 - Tigger1 DNA MER2_type -765 1653 182 315 0 0 0 chr3 169690428 169690463 -57834115 + (A)n Simple_repeat Simple_repeat 1 35 0 2590 52 0 0 chr3 169691204 169691510 -57833068 + AluY SINE Alu 1 306 -5 727 289 53 44 chr3 169691613 169691973 -57832605 + MLT1J LTR MaLR 146 508 -3 236 329 61 79 chr3 169692034 169692198 -57832380 + MIR SINE MIR 3 113 -95 766 237 68 6 chr3 169694244 169694421 -57830157 - MER5A DNA MER1_type -1 188 1 22 0 0 0 chr3 169694706 169694728 -57829850 + AT_rich Low_complexity Low_complexity 1 22 0 25 83 0 0 chr3 169694771 169694831 -57829747 + AT_rich Low_complexity Low_complexity 1 60 0 2197 117 3 0 chr3 169695313 169695612 -57828966 + AluSx SINE Alu 1 300 -12 23 33 0 0 chr3 169695836 169695866 -57828712 + AT_rich Low_complexity Low_complexity 1 30 0 2305 104 0 3 chr3 169695951 169696259 -57828319 - AluSq SINE Alu -6 307 1 472 280 19 0 chr3 169696480 169696587 -57827991 + MER81 DNA DNA 3 111 -3 513 345 5 24 chr3 169696727 169696933 -57827645 - MIR SINE MIR -44 218 17 277 214 12 60 chr3 169696941 169697025 -57827553 + MER5A DNA MER1_type 25 104 -85 21 71 0 0 chr3 169698063 169698105 -57826473 + AT_rich Low_complexity Low_complexity 1 42 0 273 265 111 58 chr3 169698185 169698374 -57826204 - MIR SINE MIR -54 208 10 2558 49 0 3 chr3 169698414 169698719 -57825859 + AluY SINE Alu 2 305 -6 2211 118 0 0 chr3 169699817 169700114 -57824464 + AluSx SINE Alu 1 297 -15 852 218 181 49 chr3 169700558 169700841 -57823737 + HsTC2 DNA Tc2 517 761 -1137 2110 97 4 4 chr3 169700841 169701120 -57823458 + AluY SINE Alu 1 279 -32 207 0 0 0 chr3 169701121 169701144 -57823434 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 852 218 181 49 chr3 169701144 169701206 -57823372 + HsTC2 DNA Tc2 760 910 -988 822 181 124 5 chr3 169701207 169701417 -57823161 - L1MC1 LINE L1 -6 6327 6093 925 225 159 33 chr3 169701418 169702122 -57822456 + HsTC2 DNA Tc2 899 1895 -3 274 294 25 34 chr3 169702325 169702444 -57822134 - MLT2E LTR ERVL -476 152 35 337 250 9 17 chr3 169702612 169702728 -57821850 + MLT1H LTR MaLR 59 173 -376 344 267 46 8 chr3 169703696 169703827 -57820751 + L1ME LINE L1 5564 5699 -422 21 36 0 0 chr3 169704935 169704963 -57819615 + AT_rich Low_complexity Low_complexity 1 28 0 351 248 125 85 chr3 169705110 169705225 -57819353 + L1MDa LINE L1 1141 1250 -1257 2272 117 0 0 chr3 169705225 169705533 -57819045 + AluSx SINE Alu 1 308 -4 351 248 125 85 chr3 169705533 169705756 -57818822 + L1MDa LINE L1 1250 1460 -1047 321 298 44 22 chr3 169705820 169706001 -57818577 + HAL1 LINE L1 1482 1666 -841 40 21 0 0 chr3 169706219 169706266 -57818312 + AT_rich Low_complexity Low_complexity 1 47 0 233 261 87 0 chr3 169706329 169706398 -57818180 + MER5C DNA MER1_type 1 75 -249 2305 98 0 16 chr3 169706647 169706962 -57817616 + AluSg SINE Alu 1 310 0 644 276 94 46 chr3 169707082 169707184 -57817394 + L1MDa LINE L1 2226 2322 -3824 1843 171 47 0 chr3 169707184 169707482 -57817096 + AluJb SINE Alu 1 312 0 644 276 94 46 chr3 169707482 169708205 -57816373 + L1MDa LINE L1 2322 3113 -3033 1742 171 48 3 chr3 169708205 169708498 -57816080 + AluJb SINE Alu 1 306 -6 644 276 94 46 chr3 169708498 169708701 -57815877 + L1MDa LINE L1 3113 3305 -2841 713 245 8 60 chr3 169708701 169708966 -57815612 + L1MEc LINE L1 9 259 -6137 678 282 98 21 chr3 169708983 169709369 -57815209 + L1ME3A LINE L1 5532 5947 -223 1531 217 60 40 chr3 169709415 169709866 -57814712 + L1MD1 LINE L1 6 465 -6075 3029 213 86 20 chr3 169709883 169710832 -57813746 + L1MD1 LINE L1 4069 5080 -1460 1671 278 83 39 chr3 169710852 169711576 -57813002 + L1 LINE L1 579 1334 -5127 * 6136 186 19 14 chr3 169711569 169711780 -57812798 + L1 LINE L1 3821 4029 -1941 2188 135 0 0 chr3 169711780 169712084 -57812494 - AluSx SINE Alu -8 304 1 6136 186 19 14 chr3 169712084 169713272 -57811306 + L1 LINE L1 4029 5227 -743 268 284 27 0 chr3 169713309 169713383 -57811195 + MER21B LTR ERV1 13 88 -775 2663 213 97 21 chr3 169713511 169713878 -57810700 + MER21B LTR ERV1 98 436 -427 2679 191 4 6 chr3 169713878 169714365 -57810213 - MER66B LTR ERV1 0 486 1 2663 213 97 21 chr3 169714365 169714706 -57809872 + MER21B LTR ERV1 436 860 -3 4142 130 59 1 chr3 169714708 169715423 -57809155 + L1MB1 LINE L1 5413 6168 0 3002 176 37 2 chr3 169715430 169716028 -57808550 + L1MD1 LINE L1 6010 6628 -8 499 307 101 28 chr3 169716308 169716698 -57807880 + MLT1J2 LTR MaLR 23 401 -8 1478 159 25 4 chr3 169717093 169717338 -57807240 + AluJb SINE Alu 39 288 -24 455 155 9 86 chr3 169717525 169717641 -57806937 - MLT2B1 LTR ERVL 0 520 414 2491 193 14 18 chr3 169717726 169718199 -57806379 + MLT2B2 LTR ERVL 1 473 -42 384 77 0 0 chr3 169718199 169718251 -57806327 + (TCCA)n Simple_repeat Simple_repeat 1 52 0 2491 193 14 18 chr3 169718251 169718286 -57806292 + MLT2B2 LTR ERVL 473 507 -8 311 259 0 24 chr3 169718451 169718536 -57806042 + MLT1F LTR MaLR 1 83 -459 326 317 129 52 chr3 169718663 169718950 -57805628 - L3 LINE CR1 -155 1422 1114 1997 160 28 69 chr3 169720191 169720623 -57803955 - MLT2D LTR ERVL 0 414 1 2217 115 10 3 chr3 169720671 169720967 -57803611 + AluSq SINE Alu 1 298 -15 198 0 0 0 chr3 169720967 169720989 -57803589 + (TA)n Simple_repeat Simple_repeat 2 23 0 339 296 136 44 chr3 169721961 169722255 -57802323 - HAL1 LINE L1 -1296 1211 891 270 0 0 0 chr3 169724882 169724912 -57799666 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 1861 157 30 60 chr3 169725191 169725593 -57798985 + MLT1B LTR MaLR 1 390 0 323 191 15 15 chr3 169726539 169726607 -57797971 - L1MC/D LINE L1 -2126 5682 5615 1443 269 46 20 chr3 169726670 169727403 -57797175 - L2 LINE L2 -40 3273 2523 779 300 40 6 chr3 169727405 169727728 -57796850 - L1MC/D LINE L1 -2216 5592 5259 412 297 223 0 chr3 169728826 169729001 -57795577 + MIR SINE MIR 28 241 -21 357 271 40 91 chr3 169729235 169729434 -57795144 - MER91B DNA MER1_type 0 190 2 267 207 12 49 chr3 169730275 169730357 -57794221 + GA-rich Low_complexity Low_complexity 4 82 0 644 216 80 0 chr3 169730630 169730792 -57793786 - MER96 DNA MER1_type 0 175 1 1716 190 33 3 chr3 169731066 169731366 -57793212 + AluJo SINE Alu 2 310 -2 373 304 178 21 chr3 169732209 169732400 -57792178 - MIR SINE MIR -31 231 11 191 401 21 7 chr3 169732507 169732649 -57791929 - MIR3 SINE MIR -8 200 57 1230 216 83 0 chr3 169732705 169732959 -57791619 + AluJo SINE Alu 1 275 -37 27 49 0 0 chr3 169732963 169733004 -57791574 + AT_rich Low_complexity Low_complexity 1 41 0 1727 161 0 62 chr3 169733683 169734006 -57790572 + AluJo SINE Alu 3 305 -7 196 270 0 63 chr3 169734245 169734308 -57790270 + MER5A DNA MER1_type 57 115 -74 21 36 0 0 chr3 169735039 169735067 -57789511 + AT_rich Low_complexity Low_complexity 1 28 0 1834 151 0 3 chr3 169735288 169735573 -57789005 + AluJb SINE Alu 1 284 -28 917 257 38 32 chr3 169736666 169737008 -57787570 + L2 LINE L2 2811 3154 -159 418 210 113 0 chr3 169737039 169737163 -57787415 - L1MA4 LINE L1 -6 6294 6157 231 337 20 0 chr3 169737198 169737299 -57787279 - MER5B DNA MER1_type -75 103 1 24 53 0 0 chr3 169737551 169737589 -57786989 + AT_rich Low_complexity Low_complexity 1 38 0 1517 124 0 0 chr3 169738591 169738801 -57785777 + AluSg/x SINE Alu 103 312 0 2072 120 10 10 chr3 169739273 169739574 -57785004 - AluSx SINE Alu -11 301 1 402 232 71 19 chr3 169740546 169740701 -57783877 + MER113 DNA MER1_type? 1 163 -358 2206 72 0 31 chr3 169740716 169741043 -57783535 - AluY SINE Alu 0 318 1 512 264 150 70 chr3 169742319 169742705 -57781873 - MER90 LTR ERV1 -104 510 94 327 49 0 0 chr3 169742988 169743029 -57781549 + (TG)n Simple_repeat Simple_repeat 2 42 0 2345 150 8 8 chr3 169743029 169743416 -57781162 - MLT1B LTR MaLR -3 387 1 591 239 39 28 chr3 169743418 169743598 -57780980 - L1ME LINE L1 -419 5702 5521 367 98 0 196 chr3 169743959 169744071 -57780507 - MLT1K LTR MaLR -6 582 493 212 277 0 0 chr3 169744298 169744345 -57780233 - MIR3 SINE MIR -12 196 150 31 26 0 0 chr3 169745209 169745247 -57779331 + AT_rich Low_complexity Low_complexity 1 38 0 231 344 148 8 chr3 169746069 169746191 -57778387 + L2 LINE L2 3115 3253 -19 189 0 0 0 chr3 169746581 169746602 -57777976 + (T)n Simple_repeat Simple_repeat 1 21 0 817 292 146 21 chr3 169747355 169747739 -57776839 + L2 LINE L2 2826 3257 -56 1170 199 131 51 chr3 169748332 169748683 -57775895 - MLT1B LTR MaLR -11 379 1 551 283 40 32 chr3 169748706 169748953 -57775625 - Charlie8 DNA MER1_type -2157 260 12 732 300 46 4 chr3 169749266 169749506 -57775072 + L3b LINE CR1 1113 1362 -221 205 338 14 0 chr3 169749732 169749806 -57774772 - MIR SINE MIR -119 143 69 2084 98 26 26 chr3 169749950 169750256 -57774322 + AluSx SINE Alu 1 306 -6 2443 99 30 51 chr3 169750844 169751216 -57773362 - THE1B LTR MaLR 0 364 1 228 313 51 29 chr3 169751674 169751873 -57772705 + MIR SINE MIR 34 260 -2 644 255 62 118 chr3 169753833 169754335 -57770243 - L2 LINE L2 -4 3309 2836 414 0 0 0 chr3 169754906 169754952 -57769626 + (CA)n Simple_repeat Simple_repeat 1 46 0 577 243 97 24 chr3 169756263 169756458 -57768120 - Charlie8 DNA MER1_type -2197 220 4 863 191 199 13 chr3 169756728 169756959 -57767619 + ORSL DNA AcHobo 1 274 -1 990 259 40 0 chr3 169757088 169757316 -57767262 + MIR SINE MIR 23 259 -3 1696 120 3 129 chr3 169757625 169757966 -57766612 + AluSx SINE Alu 1 298 -14 190 284 54 27 chr3 169758223 169758297 -57766281 - MIR SINE MIR -60 148 73 2430 76 3 16 chr3 169758494 169758809 -57765769 + AluSp SINE Alu 1 311 -2 1329 197 9 38 chr3 169758841 169759156 -57765422 - AluJo SINE Alu -6 306 1 270 0 0 0 chr3 169761653 169761683 -57762895 + (TC)n Simple_repeat Simple_repeat 1 30 0 202 400 100 0 chr3 169763126 169763256 -57761322 - L3 LINE CR1 -5 1572 1430 458 257 120 46 chr3 169763312 169763661 -57760917 + L1ME1 LINE L1 5257 5697 -2111 194 254 113 0 chr3 169763825 169763896 -57760682 + L3 LINE CR1 1498 1576 -1 185 222 0 22 chr3 169763983 169764028 -57760550 - MIR SINE MIR -50 212 169 265 277 34 19 chr3 169764140 169764255 -57760323 - MIR SINE MIR -24 184 70 378 299 42 14 chr3 169764808 169764952 -57759626 - MIR SINE MIR -18 244 97 378 0 0 0 chr3 169765281 169765323 -57759255 + (TA)n Simple_repeat Simple_repeat 1 42 0 * 612 27 0 0 chr3 169765322 169765396 -57759182 + (GA)n Simple_repeat Simple_repeat 2 75 0 2068 91 4 0 chr3 169765418 169765694 -57758884 + AluSx SINE Alu 26 302 -10 6406 181 31 29 chr3 169767463 169768117 -57756461 - L1MC1 LINE L1 0 6333 5682 2303 132 73 9 chr3 169768117 169768459 -57756119 + THE1B LTR MaLR 1 364 0 6406 181 31 29 chr3 169768459 169769616 -57754962 - L1MC1 LINE L1 -651 5682 4510 1746 194 70 17 chr3 169769616 169769961 -57754617 + MLT1A1 LTR MaLR 3 365 0 6406 181 31 29 chr3 169769961 169770514 -57754064 - L1MC1 LINE L1 -1823 4510 3960 622 233 10 64 chr3 169770517 169770719 -57753859 - L1MC4a LINE L1 -1917 5891 5701 * 1610 222 84 22 chr3 169770717 169771133 -57753445 + L1ME1 LINE L1 5739 6334 0 1256 189 68 47 chr3 169771337 169771633 -57752945 - AluJo SINE Alu -10 302 1 425 302 139 0 chr3 169772374 169772546 -57752032 + MIR SINE MIR 11 206 -56 2208 97 7 3 chr3 169772799 169773088 -57751490 + AluSc SINE Alu 1 290 -19 4172 183 44 45 chr3 169773096 169773185 -57751393 + L1MB4 LINE L1 4460 4548 -1632 2287 108 0 3 chr3 169773185 169773482 -57751096 + AluSx SINE Alu 1 296 -16 4172 183 44 45 chr3 169773482 169773667 -57750911 + L1MB4 LINE L1 4548 4732 -1448 1842 110 70 33 chr3 169773667 169773968 -57750610 - AluSx SINE Alu 0 312 1 4172 183 44 45 chr3 169773968 169775061 -57749517 + L1MB4 LINE L1 4732 5830 -350 239 260 0 31 chr3 169778518 169778614 -57745964 + (CCCCG)n Simple_repeat Simple_repeat 5 97 0 * 242 203 0 17 chr3 169778559 169778618 -57745960 + (CCCG)n Simple_repeat Simple_repeat 2 59 0 2126 119 17 0 chr3 169778635 169778929 -57745649 - AluSx SINE Alu -13 299 1 1532 161 71 45 chr3 169778929 169779282 -57745296 + L1MB8 LINE L1 5817 6178 0 211 277 289 12 chr3 169780025 169780108 -57744470 + MER5A DNA MER1_type 77 182 -7 23 0 0 0 chr3 169780933 169780956 -57743622 + AT_rich Low_complexity Low_complexity 1 23 0 456 128 0 0 chr3 169781003 169781081 -57743497 + HSMAR2 DNA Mariner 9 86 -1216 379 234 21 21 chr3 169781081 169781175 -57743403 - MER5A DNA MER1_type -70 119 26 236 352 28 0 chr3 169781590 169781661 -57742917 + MIR SINE MIR 29 101 -161 786 109 0 0 chr3 169781661 169781762 -57742816 + AluSq/x SINE Alu 33 133 -180 301 156 111 56 chr3 169781776 169781866 -57742712 + MIR SINE MIR 97 191 -71 27 0 0 0 chr3 169782997 169783024 -57741554 + GC_rich Low_complexity Low_complexity 1 27 0 257 200 0 67 chr3 169784313 169784373 -57740205 - L2 LINE L2 -245 3068 3013 639 108 0 0 chr3 169784448 169784531 -57740047 + FRAM SINE Alu 70 152 -24 2020 108 0 87 chr3 169785781 169786114 -57738464 + AluSx SINE Alu 1 304 -8 261 0 0 0 chr3 169787937 169787966 -57736612 + (TG)n Simple_repeat Simple_repeat 2 30 0 1286 199 14 5 chr3 169789178 169789394 -57735184 + MER20 DNA MER1_type 2 219 0 44 63 0 0 chr3 169790563 169790642 -57733936 + AT_rich Low_complexity Low_complexity 1 79 0 223 250 56 28 chr3 169792491 169792563 -57732015 - L2 LINE L2 0 3272 3199 204 265 41 0 chr3 169792811 169792860 -57731718 - MIR3 SINE MIR -43 165 115 1989 146 0 13 chr3 169793624 169793925 -57730653 + AluSq SINE Alu 3 299 -14 185 350 60 0 chr3 169795310 169795410 -57729168 - L2 LINE L2 -469 2845 2740 553 149 19 19 chr3 169795686 169795793 -57728785 - MER5A DNA MER1_type -81 108 2 230 267 50 17 chr3 169797500 169797620 -57726958 - L1ME LINE L1 -287 5834 5711 314 351 90 0 chr3 169797635 169797746 -57726832 - L2 LINE L2 -3 3269 3149 2395 199 69 43 chr3 169797779 169798108 -57726470 - L1MD2 LINE L1 -1 6358 6039 2337 96 0 0 chr3 169798108 169798411 -57726167 - AluSg SINE Alu -7 303 1 2395 199 69 43 chr3 169798411 169798729 -57725849 - L1MD2 LINE L1 -320 6039 5694 1868 174 5 42 chr3 169798983 169799362 -57725216 - MLT1A1 LTR MaLR 0 365 1 634 291 69 59 chr3 169800330 169800835 -57723743 + L2 LINE L2 2804 3313 0 2192 117 0 3 chr3 169800906 169801205 -57723373 + AluSx SINE Alu 1 298 -14 238 244 150 69 chr3 169801704 169801864 -57722714 + MIR SINE MIR 15 187 -75 334 274 264 10 chr3 169801891 169802088 -57722490 + MIR SINE MIR 14 260 -2 648 277 101 0 chr3 169802110 169802298 -57722280 + MIR SINE MIR 8 214 -48 2266 113 3 0 chr3 169802355 169802657 -57721921 - AluSx SINE Alu -9 303 1 1857 146 35 14 chr3 169804860 169805027 -57719551 - AluJb SINE Alu -18 294 117 315 0 0 0 chr3 169805027 169805062 -57719516 + (TG)n Simple_repeat Simple_repeat 2 36 0 1857 146 35 14 chr3 169805062 169805182 -57719396 - AluJb SINE Alu -195 117 1 244 125 0 0 chr3 169806527 169806567 -57718011 + Alu SINE Alu 37 76 -57 244 125 0 0 chr3 169806578 169806618 -57717960 + Alu SINE Alu 37 76 -57 1748 105 0 77 chr3 169806629 169806914 -57717664 + AluSx SINE Alu 37 299 -13 475 297 52 7 chr3 169806927 169807082 -57717496 + Charlie8 DNA MER1_type 1 162 -2255 2772 245 75 53 chr3 169807098 169808010 -57716568 - L2 LINE L2 -846 2468 1531 2511 55 6 10 chr3 169808010 169808322 -57716256 + AluY SINE Alu 1 311 0 2772 245 75 53 chr3 169808322 169808398 -57716180 - L2 LINE L2 -1783 1531 1458 2068 113 3 55 chr3 169809614 169809943 -57714635 - AluSx SINE Alu 0 312 1 1543 150 54 73 chr3 169810811 169811124 -57713454 + AluJb SINE Alu 1 307 -5 588 231 8 30 chr3 169812420 169812554 -57712024 + MIR SINE MIR 1 131 -131 375 278 68 15 chr3 169813561 169813694 -57710884 + MIR SINE MIR 2 141 -121 394 224 68 114 chr3 169814369 169814514 -57710064 - L1ME3A LINE L1 -104 6066 5941 2303 97 7 10 chr3 169814514 169814824 -57709754 - AluSc SINE Alu 0 309 1 394 224 68 114 chr3 169814824 169814986 -57709592 - L1ME3A LINE L1 -229 5941 5773 239 221 58 47 chr3 169815234 169815320 -57709258 - MLT1I LTR MaLR -243 166 80 649 250 20 31 chr3 169815383 169815579 -57708999 - L1ME3A LINE L1 -421 5749 5556 969 151 147 27 chr3 169815771 169815996 -57708582 + AluJo SINE Alu 41 292 -20 2324 135 9 0 chr3 169817186 169817520 -57707058 - MER1B DNA MER1_type 0 337 1 256 259 35 0 chr3 169817523 169817581 -57706997 + MIR SINE MIR 203 262 0 319 248 37 46 chr3 169817641 169817750 -57706828 - MIR SINE MIR -108 154 47 266 329 56 25 chr3 169819979 169820140 -57704438 + L3 LINE CR1 624 789 -788 205 240 20 20 chr3 169820462 169820512 -57704066 - L2 LINE L2 -7 3265 3216 2317 84 7 26 chr3 169820736 169821046 -57703532 - AluSc SINE Alu -4 305 2 22 35 0 0 chr3 169822166 169822195 -57702383 + AT_rich Low_complexity Low_complexity 1 29 0 29 28 0 0 chr3 169822356 169822392 -57702186 + AT_rich Low_complexity Low_complexity 1 36 0 201 171 0 0 chr3 169823179 169823214 -57701364 + A-rich Low_complexity Low_complexity 1 35 0 234 204 41 0 chr3 169823316 169823365 -57701213 - L3 LINE CR1 -15 1562 1512 286 27 0 0 chr3 169824489 169824526 -57700052 - MADE1 DNA Mariner -42 38 2 2465 56 16 3 chr3 169824712 169825016 -57699562 + AluY SINE Alu 1 308 -3 910 299 131 40 chr3 169825280 169826138 -57698440 + L1MC4a LINE L1 4463 5398 -748 336 315 237 0 chr3 169826252 169826402 -57698176 + L1MC4a LINE L1 5618 5731 -2077 1311 100 96 13 chr3 169826402 169826632 -57697946 + L1MB3 LINE L1 5935 6183 0 336 315 237 0 chr3 169826632 169826713 -57697865 + L1MC4a LINE L1 5731 5904 -1904 180 279 25 63 chr3 169827224 169827303 -57697275 + L2 LINE L2 3238 3313 0 1801 36 9 5 chr3 169827493 169827715 -57696863 + AluY SINE Alu 86 308 -3 2557 49 0 0 chr3 169827885 169828189 -57696389 + AluY SINE Alu 1 304 -7 2116 138 14 3 chr3 169830628 169830984 -57693594 + MER46B DNA MER2_type 2 236 0 254 286 65 52 chr3 169831447 169831601 -57692977 + MIR SINE MIR 63 218 -44 358 282 70 33 chr3 169832270 169832483 -57692095 - L2 LINE L2 -182 3090 2870 572 211 112 0 chr3 169832698 169832850 -57691728 - L1MC4 LINE L1 -615 7427 7259 26 50 0 0 chr3 169832850 169832890 -57691688 + AT_rich Low_complexity Low_complexity 1 40 0 360 77 0 0 chr3 169832890 169832942 -57691636 + (GA)n Simple_repeat Simple_repeat 2 53 0 1808 231 89 20 chr3 169833415 169834021 -57690557 - L1MC4 LINE L1 -140 7902 7255 38614 73 7 2 chr3 169834022 169840144 -57684434 + L1PA7 LINE L1 1 6150 -4 22 0 0 0 chr3 169840556 169840578 -57684000 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 169841412 169841433 -57683145 + AT_rich Low_complexity Low_complexity 1 21 0 311 279 30 61 chr3 169843480 169843645 -57680933 - L2 LINE L2 -2 3311 3152 5082 67 0 0 chr3 169843679 169844368 -57680210 - L1P LINE L1 -4197 1949 1261 550 260 70 45 chr3 169844372 169844572 -57680006 - L2 LINE L2 -174 3139 2935 386 364 17 11 chr3 169844743 169844919 -57679659 - MIR3 SINE MIR -14 194 18 406 305 40 40 chr3 169844957 169845131 -57679447 - L2 LINE L2 -522 2792 2619 228 122 0 0 chr3 169845163 169845204 -57679374 + (TGAA)n Simple_repeat Simple_repeat 1 41 0 3978 230 109 19 chr3 169845333 169846434 -57678144 + L1MDa LINE L1 36 1235 -5305 1806 196 11 3 chr3 169846435 169846788 -57677790 + MLT1A1 LTR MaLR 10 365 0 2810 182 35 46 chr3 169846794 169847372 -57677206 + L1MDa LINE L1 1237 1805 -4735 303 135 0 0 chr3 169847372 169847424 -57677154 + L1PA11 LINE L1 6123 6174 0 2810 182 35 46 chr3 169847424 169847653 -57676925 + L1MDa LINE L1 1805 2035 -4505 678 213 29 71 chr3 169847655 169847895 -57676683 - MLT1D LTR MaLR -275 230 1 * 2641 204 43 99 chr3 169847895 169848613 -57675965 + L1MDa LINE L1 2543 3300 -3240 682 195 125 115 chr3 169848613 169848997 -57675581 + MLT1B LTR MaLR 1 388 -2 2641 204 43 99 chr3 169848997 169849047 -57675531 + L1MDa LINE L1 3300 3351 -3189 1760 166 9 31 chr3 169849047 169849397 -57675181 - MER2 DNA MER2_type -1 343 2 2641 204 43 99 chr3 169849397 169849699 -57674879 + L1MDa LINE L1 3351 3554 -2986 499 302 73 9 chr3 169850880 169851106 -57673472 + MIR SINE MIR 10 258 -4 208 203 40 40 chr3 169851388 169851462 -57673116 - MIR SINE MIR -80 182 109 669 304 80 0 chr3 169851592 169851793 -57672785 - MIR SINE MIR -2 260 44 187 333 115 13 chr3 169851922 169852000 -57672578 - MIR SINE MIR -92 116 31 246 221 58 47 chr3 169852011 169852097 -57672481 - L2 LINE L2 -18 3295 3209 202 222 16 48 chr3 169852993 169853056 -57671522 + MIR SINE MIR 191 251 -11 2422 92 0 0 chr3 169853353 169853657 -57670921 + AluSc SINE Alu 1 304 -5 1655 193 8 57 chr3 169853756 169854140 -57670438 + MLT1A1 LTR MaLR 1 365 0 2715 147 21 126 chr3 169854196 169854815 -57669763 + MLT2B3 LTR ERVL 1 554 0 242 268 21 10 chr3 169856380 169856477 -57668101 - L1ME4a LINE L1 -92 6029 5932 318 356 9 0 chr3 169856557 169856672 -57667906 - L1ME4a LINE L1 -1986 5822 5707 2129 221 94 17 chr3 169857668 169857838 -57666740 + L1MC4 LINE L1 6450 6606 -1282 186 103 0 0 chr3 169857838 169857867 -57666711 + (TATATG)n Simple_repeat Simple_repeat 5 33 0 2129 221 94 17 chr3 169857867 169858400 -57666178 + L1MC4 LINE L1 6606 7275 -613 40932 68 5 2 chr3 169858402 169864539 -57660039 - L1PA5 LINE L1 0 6154 1 2019 230 88 19 chr3 169864540 169865157 -57659421 + L1MC4 LINE L1 7255 7913 -129 360 77 0 0 chr3 169865619 169865671 -57658907 + (TC)n Simple_repeat Simple_repeat 2 53 0 26 50 0 0 chr3 169865671 169865711 -57658867 + AT_rich Low_complexity Low_complexity 1 40 0 619 211 112 0 chr3 169865711 169865863 -57658715 + L1MC4 LINE L1 7259 7427 -615 353 293 56 28 chr3 169866078 169866293 -57658285 + L2 LINE L2 2870 3090 -182 248 286 65 52 chr3 169866962 169867116 -57657462 - MIR SINE MIR -44 218 63 2164 135 14 3 chr3 169867579 169867935 -57656643 - MER46B DNA MER2_type 0 236 2 856 138 0 0 chr3 169871128 169871251 -57653327 + AluSx SINE Alu 2 124 -188 297 167 0 0 chr3 169871251 169871305 -57653273 + (TA)n Simple_repeat Simple_repeat 1 54 0 1062 155 0 0 chr3 169871306 169871503 -57653075 + AluSx SINE Alu 125 321 0 1849 161 0 20 chr3 169871656 169871954 -57652624 + AluJo SINE Alu 2 293 -19 1378 220 135 2 chr3 169872365 169872779 -57651799 - Charlie4a DNA MER1_type -1 507 39 218 152 43 0 chr3 169872977 169873023 -57651555 + CT-rich Low_complexity Low_complexity 1 48 0 2194 84 0 11 chr3 169873569 169873887 -57650691 + AluSg SINE Alu 1 315 0 2237 104 0 10 chr3 169873982 169874290 -57650288 + AluSx SINE Alu 1 305 -7 523 284 98 11 chr3 169874831 169875014 -57649564 + MIR SINE MIR 51 249 -13 183 80 0 0 chr3 169876783 169876808 -57647770 + (A)n Simple_repeat Simple_repeat 1 25 0 23 0 0 0 chr3 169876901 169876924 -57647654 + AT_rich Low_complexity Low_complexity 1 23 0 228 243 27 27 chr3 169876981 169877055 -57647523 + L2 LINE L2 3232 3305 -8 1878 243 46 11 chr3 169877785 169878341 -57646237 + L1MB8 LINE L1 5599 6178 0 229 350 88 0 chr3 169878552 169878632 -57645946 - L2 LINE L2 -6 3266 3180 216 0 0 0 chr3 169878659 169878683 -57645895 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 182 268 49 63 chr3 169878837 169878979 -57645599 + L2 LINE L2 1329 1468 -1846 333 224 26 13 chr3 169879297 169879373 -57645205 + MLT1-int LTR MaLR 1255 1331 -40 216 186 51 17 chr3 169879377 169879436 -57645142 + L2 LINE L2 2257 2317 -997 477 257 22 0 chr3 169879466 169879602 -57644976 - MER104 DNA Tc2 -3 177 39 7183 38 9 5 chr3 169879605 169880612 -57643966 + L1PA5 LINE L1 5141 6151 -3 219 355 0 0 chr3 169880731 169880807 -57643771 - L2 LINE L2 -301 2971 2896 2870 118 128 0 chr3 169880886 169881387 -57643191 - MER34B LTR ERV1 0 565 1 4106 208 54 60 chr3 169881387 169881604 -57642974 - MER34B-int LTR ERV1 0 6331 6114 261 0 0 0 chr3 169881604 169881633 -57642945 + (AACTG)n Simple_repeat Simple_repeat 2 30 0 4106 208 54 60 chr3 169881633 169882643 -57641935 - MER34B-int LTR ERV1 -217 6114 5112 1478 179 27 19 chr3 169882654 169882917 -57641661 - AluJo SINE Alu -47 265 1 1255 242 54 70 chr3 169882917 169883198 -57641380 - MER34B-int LTR ERV1 -1985 2951 2667 2140 58 62 0 chr3 169883198 169883473 -57641105 + AluY SINE Alu 1 292 -19 1255 242 54 70 chr3 169883473 169883512 -57641066 - MER34B-int LTR ERV1 -2269 2667 2629 189 0 0 0 chr3 169883512 169883533 -57641045 + (CAA)n Simple_repeat Simple_repeat 2 22 0 1255 242 54 70 chr3 169883533 169883764 -57640814 - MER34B-int LTR ERV1 -2307 2629 2408 492 202 38 126 chr3 169883879 169884141 -57640437 - MER34B-int LTR ERV1 -1906 2974 2099 * 785 223 25 60 chr3 169884131 169884413 -57640165 - MER34B-int LTR ERV1 -2979 1957 1686 1517 181 71 47 chr3 169884436 169885091 -57639487 - MER34B-int LTR ERV1 -2866 2005 883 309 110 219 14 chr3 169885143 169885216 -57639362 - MER67D LTR ERV1 -307 207 120 1264 227 57 23 chr3 169885395 169885747 -57638831 - MER34B-int LTR ERV1 -4279 657 294 1089 248 115 40 chr3 169885882 169886326 -57638252 - MER34B-int LTR ERV1 -5489 842 366 256 229 72 0 chr3 169886321 169886404 -57638174 - MER34B-int LTR ERV1 -4954 1377 1289 * 254 259 72 90 chr3 169886383 169886549 -57638029 - MER34B-int LTR ERV1 -6092 239 77 * 3079 134 30 21 chr3 169886649 169887180 -57637398 - MER34B LTR ERV1 -29 536 1 364 175 12 50 chr3 169888359 169888439 -57636139 + MER20 DNA MER1_type 1 77 -142 529 141 0 0 chr3 169888515 169888593 -57635985 + THE1A LTR MaLR 276 353 -2 11789 90 6 1 chr3 169888595 169890167 -57634411 + THE1A-int LTR MaLR 1 1580 0 2712 87 0 0 chr3 169890167 169890522 -57634056 + THE1A LTR MaLR 1 355 0 760 180 2 2 chr3 169890537 169890675 -57633903 + MER20 DNA MER1_type 79 219 0 2340 91 0 3 chr3 169890894 169891201 -57633377 - AluSx SINE Alu -6 306 1 1104 156 52 8 chr3 169892360 169892610 -57631968 + L1MA8 LINE L1 6019 6279 -12 205 156 0 0 chr3 169894280 169894312 -57630266 + GA-rich Low_complexity Low_complexity 1 32 0 24 32 0 0 chr3 169894545 169894576 -57630002 + AT_rich Low_complexity Low_complexity 1 31 0 22 70 0 0 chr3 169894740 169894783 -57629795 + AT_rich Low_complexity Low_complexity 1 43 0 2157 181 167 8 chr3 169895886 169896389 -57628189 - MER34C LTR ERV1 -2 583 1 4394 152 16 5 chr3 169896411 169897148 -57627430 - L1PA16 LINE L1 -2 6164 5420 2374 148 24 0 chr3 169897205 169897582 -57626996 - MER57A LTR ERV1 -17 386 1 359 244 150 8 chr3 169898235 169898362 -57626216 - MER103 DNA DNA -20 146 2 3079 127 86 25 chr3 169898617 169899178 -57625400 - LTR49 LTR ERV1 0 595 1 312 256 12 99 chr3 169899331 169899503 -57625075 + LTR67 LTR ERVL 2 158 -399 2262 83 0 42 chr3 169899764 169900077 -57624501 + AluY SINE Alu 1 300 -11 287 371 0 0 chr3 169900078 169900175 -57624403 + MLT1K LTR MaLR 267 363 -225 3341 166 19 80 chr3 169900216 169900952 -57623626 - LTR8 LTR ERV1 0 691 1 256 165 0 38 chr3 169902554 169902633 -57621945 + CT-rich Low_complexity Low_complexity 2 77 0 318 283 20 0 chr3 169903272 169903371 -57621207 + HERVL68 LTR ERVL 2783 2883 -154 547 200 37 0 chr3 169903554 169903689 -57620889 - L1MC4 LINE L1 -410 7632 7493 3041 224 42 35 chr3 169903763 169904669 -57619909 + L1ME2 LINE L1 4892 5817 -347 1885 163 0 7 chr3 169904669 169904958 -57619620 + AluSx SINE Alu 1 287 -25 3041 224 42 35 chr3 169904958 169905301 -57619277 + L1ME2 LINE L1 5817 6156 -8 214 231 0 0 chr3 169906550 169906589 -57617989 + (CA)n Simple_repeat Simple_repeat 2 40 0 1892 315 112 62 chr3 169906656 169908088 -57616490 - L3 LINE CR1 -10 1567 64 918 246 96 8 chr3 169908089 169908329 -57616249 + MIR SINE MIR 2 262 0 274 204 9 120 chr3 169909994 169910102 -57614476 + L3 LINE CR1 1314 1409 -168 917 302 50 20 chr3 169910184 169910581 -57613997 - LTR16C LTR ERVL -2 489 81 376 328 56 0 chr3 169911534 169911659 -57612919 + L2 LINE L2 3182 3313 0 299 328 59 17 chr3 169912462 169912581 -57611997 - MIR3 SINE MIR -77 131 8 431 271 73 57 chr3 169913164 169913341 -57611237 - L2 LINE L2 -182 3090 2911 614 267 86 16 chr3 169913661 169913848 -57610730 + MIR SINE MIR 7 206 -56 24 32 0 0 chr3 169914470 169914501 -57610077 + AT_rich Low_complexity Low_complexity 1 31 0 180 246 116 14 chr3 169915428 169915497 -57609081 - L3 LINE CR1 -1 1576 1501 197 268 14 28 chr3 169915563 169915634 -57608944 - L3 LINE CR1 -871 706 637 2426 66 0 7 chr3 169915729 169916033 -57608545 + AluY SINE Alu 1 302 -9 367 370 79 5 chr3 169916463 169916652 -57607926 - MIR3 SINE MIR 0 208 6 1205 238 90 50 chr3 169916725 169917205 -57607373 + MLT1D LTR MaLR 7 505 0 240 35 0 0 chr3 169917691 169917720 -57606858 + (CA)n Simple_repeat Simple_repeat 1 29 0 316 302 12 0 chr3 169917980 169918066 -57606512 + MER81 DNA DNA 5 91 -23 829 174 23 0 chr3 169919866 169919998 -57604580 + AluJb SINE Alu 1 135 -177 3015 198 45 37 chr3 169920260 169921103 -57603475 + L1MC4a LINE L1 6959 7808 0 28 0 0 0 chr3 169921122 169921150 -57603428 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr3 169921383 169921414 -57603164 + AT_rich Low_complexity Low_complexity 1 31 0 484 329 26 13 chr3 169922678 169922830 -57601748 - L2 LINE L2 -1 3271 3118 702 113 0 0 chr3 169924499 169924605 -57599973 + (TA)n Simple_repeat Simple_repeat 2 107 0 21 0 0 0 chr3 169924844 169924865 -57599713 + AT_rich Low_complexity Low_complexity 1 21 0 216 0 0 0 chr3 169925135 169925159 -57599419 + (A)n Simple_repeat Simple_repeat 1 24 0 26 50 0 0 chr3 169926264 169926304 -57598274 + AT_rich Low_complexity Low_complexity 1 40 0 2812 16 3 0 chr3 169926775 169927086 -57597492 - AluYb8 SINE Alu -6 312 1 282 298 163 7 chr3 169927500 169927641 -57596937 - MIR3 SINE MIR -6 202 40 2164 56 45 4 chr3 169928045 169928349 -57596229 - AluY SINE Alu 0 318 4 2217 110 0 10 chr3 169928814 169929177 -57595401 + AluSg SINE Alu 1 360 0 509 196 101 18 chr3 169929668 169929836 -57594742 - MER53 DNA DNA 0 189 8 1026 114 33 22 chr3 169930058 169930242 -57594336 + MER20 DNA MER1_type 30 215 -4 219 69 0 0 chr3 169930424 169930453 -57594125 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 414 248 30 46 chr3 169931509 169931679 -57592899 + MIR SINE MIR 19 189 -62 529 372 31 43 chr3 169932456 169932781 -57591797 - L2 LINE L2 -37 3235 2915 189 0 0 0 chr3 169934825 169934846 -57589732 + (T)n Simple_repeat Simple_repeat 1 21 0 1205 172 40 0 chr3 169935473 169935671 -57588907 + AluJo SINE Alu 87 292 -20 267 250 18 0 chr3 169935723 169935779 -57588799 - L2 LINE L2 -15 3257 3201 206 259 0 19 chr3 169935779 169935833 -57588745 + GA-rich Low_complexity Low_complexity 4 56 0 2244 89 7 3 chr3 169936053 169936346 -57588232 + AluSq SINE Alu 1 294 -19 24 0 0 0 chr3 169936740 169936764 -57587814 + AT_rich Low_complexity Low_complexity 1 24 0 213 383 39 23 chr3 169936879 169937007 -57587571 + L2 LINE L2 3143 3272 0 393 374 22 7 chr3 169938217 169938356 -57586222 - L2 LINE L2 -20 3252 3112 242 354 50 27 chr3 169938556 169938816 -57585762 - L2 LINE L2 -411 2903 2638 234 211 42 21 chr3 169941003 169941098 -57583480 + L1ME4a LINE L1 6025 6121 0 402 301 49 0 chr3 169941336 169941479 -57583099 - MIR SINE MIR -50 212 63 1406 77 6 6 chr3 169942391 169942573 -57582005 - AluSq SINE Alu -131 182 1 300 256 73 51 chr3 169942731 169942868 -57581710 + MIR SINE MIR 8 147 -115 290 370 50 8 chr3 169944027 169944265 -57580313 + L2 LINE L2 2487 2734 -580 765 267 68 14 chr3 169944286 169944507 -57580071 + MIR SINE MIR 8 240 -22 2063 123 27 0 chr3 169944517 169944818 -57579760 - AluSx SINE Alu -3 309 1 198 313 76 80 chr3 169944875 169945150 -57579428 + L2 LINE L2 2845 3118 -154 2273 110 10 0 chr3 169945647 169945955 -57578623 - AluSp SINE Alu -2 311 1 262 306 45 45 chr3 169946084 169946218 -57578360 - MIR SINE MIR -69 193 60 2337 95 0 0 chr3 169947575 169947871 -57576707 + AluSg SINE Alu 1 296 -14 238 244 150 69 chr3 169948370 169948530 -57576048 + MIR SINE MIR 15 187 -75 310 259 269 15 chr3 169948557 169948754 -57575824 + MIR SINE MIR 14 260 -2 1044 81 0 15 chr3 169948908 169949044 -57575534 - AluSq/x SINE Alu -178 134 1 180 267 67 56 chr3 169949370 169949460 -57575118 - L3 LINE CR1 -1301 276 186 2000 92 0 0 chr3 169949476 169949725 -57574853 - AluSg SINE Alu -18 292 44 560 331 22 0 chr3 169951374 169951555 -57573023 + MIR SINE MIR 8 192 -70 354 23 0 0 chr3 169951597 169951640 -57572938 + (CA)n Simple_repeat Simple_repeat 2 44 0 237 65 0 0 chr3 169951942 169951973 -57572605 + (CA)n Simple_repeat Simple_repeat 1 31 0 266 245 133 10 chr3 169952361 169952459 -57572119 + MIR SINE MIR 143 252 -10 230 56 28 0 chr3 169952764 169952800 -57571778 + (TTTTG)n Simple_repeat Simple_repeat 1 37 0 370 274 134 19 chr3 169953520 169953677 -57570901 - MIR SINE MIR -48 214 40 281 285 57 32 chr3 169954410 169954568 -57570010 + L1 LINE L1 4003 4164 -1982 23 0 0 0 chr3 169954772 169954795 -57569783 + AT_rich Low_complexity Low_complexity 1 23 0 31 26 0 0 chr3 169954854 169954892 -57569686 + AT_rich Low_complexity Low_complexity 1 38 0 2110 129 3 0 chr3 169954954 169955249 -57569329 - AluSx SINE Alu -16 296 1 218 330 174 9 chr3 169955447 169955562 -57569016 + MIR SINE MIR 18 151 -111 313 302 141 0 chr3 169955630 169955779 -57568799 - L2 LINE L2 -997 2317 2148 2188 117 7 0 chr3 169955786 169956094 -57568484 + AluSp SINE Alu 1 310 -3 538 262 115 21 chr3 169956183 169956374 -57568204 + MIR SINE MIR 53 261 -1 1207 203 58 0 chr3 169956523 169956818 -57567760 - MER33 DNA MER1_type -12 312 1 194 232 51 130 chr3 169957864 169958002 -57566576 - L3 LINE CR1 -265 1312 1186 2123 139 0 0 chr3 169958901 169959204 -57565374 - AluSx SINE Alu -9 303 1 22 35 0 0 chr3 169959637 169959666 -57564912 + AT_rich Low_complexity Low_complexity 1 29 0 201 367 58 8 chr3 169961813 169961933 -57562645 - MIR3 SINE MIR -76 132 7 23 0 0 0 chr3 169963142 169963165 -57561413 + AT_rich Low_complexity Low_complexity 1 23 0 2309 86 0 3 chr3 169963979 169964282 -57560296 - AluSc SINE Alu -7 302 1 232 327 64 18 chr3 169964454 169964564 -57560014 + MIR SINE MIR 113 227 -35 985 195 0 0 chr3 169965105 169965274 -57559304 + AluJb SINE Alu 121 289 -23 819 219 17 6 chr3 169965694 169965872 -57558706 - MER58A DNA MER1_type -15 209 30 299 252 70 26 chr3 169965894 169966009 -57558569 - MIR SINE MIR 0 262 143 483 230 11 94 chr3 169968120 169968162 -57556416 - MER5B DNA MER1_type -3 175 131 2227 116 0 0 chr3 169968162 169968463 -57556115 + AluSg SINE Alu 1 301 -9 483 230 11 94 chr3 169968463 169968611 -57555967 - MER5B DNA MER1_type -47 131 1 24 53 0 0 chr3 169969247 169969285 -57555293 + AT_rich Low_complexity Low_complexity 1 38 0 874 291 43 0 chr3 169969582 169969816 -57554762 + MIR SINE MIR 3 246 -16 847 196 0 0 chr3 169969906 169970049 -57554529 + AluJb SINE Alu 137 279 -33 462 36 0 0 chr3 169970049 169970105 -57554473 + (CA)n Simple_repeat Simple_repeat 1 56 0 4542 210 73 46 chr3 169970884 169970943 -57553635 + L1MDb LINE L1 759 815 -5591 2029 140 0 0 chr3 169970943 169971255 -57553323 + AluSx SINE Alu 1 312 0 4542 210 73 46 chr3 169971255 169971270 -57553308 + L1MDb LINE L1 815 828 -5578 1793 132 84 0 chr3 169971270 169971543 -57553035 + AluSx SINE Alu 3 298 -14 4542 210 73 46 chr3 169971543 169973367 -57551211 + L1MDb LINE L1 828 2719 -3687 254 319 77 86 chr3 169973769 169974224 -57550354 + L2 LINE L2 2853 3303 -10 211 205 24 48 chr3 169974431 169974514 -57550064 + (TATATG)n Simple_repeat Simple_repeat 2 82 0 1750 172 3 24 chr3 169977259 169977550 -57547028 + AluJb SINE Alu 1 285 -27 304 243 18 0 chr3 169977550 169977661 -57546917 + (TA)n Simple_repeat Simple_repeat 2 114 0 315 0 0 0 chr3 169978120 169978155 -57546423 + (A)n Simple_repeat Simple_repeat 1 35 0 21 0 0 0 chr3 169978277 169978298 -57546280 + AT_rich Low_complexity Low_complexity 1 21 0 2139 56 45 4 chr3 169979002 169979306 -57545272 - AluY SINE Alu 0 318 4 2169 104 0 19 chr3 169979771 169980087 -57544491 + AluSg SINE Alu 1 310 0 581 300 41 28 chr3 169980207 169980309 -57544269 + L1M4 LINE L1 2226 2325 -3821 1685 185 47 0 chr3 169980309 169980607 -57543971 + AluJb SINE Alu 1 312 0 581 300 41 28 chr3 169980607 169981040 -57543538 + L1M4 LINE L1 2325 2768 -3378 24 0 0 0 chr3 169981096 169981120 -57543458 + AT_rich Low_complexity Low_complexity 1 24 0 1804 104 4 8 chr3 169981459 169981709 -57542869 + AluY SINE Alu 44 292 -19 314 71 0 0 chr3 169981949 169981991 -57542587 - L1PA5 LINE L1 -9 6145 6104 2389 78 3 3 chr3 169982846 169983154 -57541424 + AluSg SINE Alu 1 308 -2 327 318 175 0 chr3 169983494 169983648 -57540930 - MER91A DNA MER1_type 0 196 16 369 301 127 12 chr3 169983702 169983868 -57540710 + MER5A DNA MER1_type 4 188 -1 328 282 136 0 chr3 169983868 169983973 -57540605 + L2 LINE L2 3193 3312 -1 559 256 90 71 chr3 169984054 169984156 -57540422 + MIR SINE MIR 45 144 -118 1620 191 0 32 chr3 169984156 169984471 -57540107 - AluJb SINE Alu -7 305 1 559 256 90 71 chr3 169984471 169984579 -57539999 + MIR SINE MIR 144 259 -3 269 185 0 37 chr3 169984982 169985036 -57539542 - L2 LINE L2 0 3313 3262 226 310 35 26 chr3 169986451 169986564 -57538014 + L1ME3A LINE L1 6057 6170 0 878 184 163 28 chr3 169986642 169986924 -57537654 + MER33 DNA MER1_type 1 320 -4 198 0 0 0 chr3 169989205 169989227 -57535351 + (A)n Simple_repeat Simple_repeat 1 22 0 381 240 31 23 chr3 169989228 169989357 -57535221 + HAL1b LINE L1 416 545 -803 847 253 63 17 chr3 169989361 169989598 -57534980 + MIR SINE MIR 3 250 -12 848 251 96 8 chr3 169989674 169989913 -57534665 + MIR SINE MIR 2 261 -1 183 302 0 0 chr3 169990066 169990109 -57534469 - L2 LINE L2 -8 3305 3263 2223 255 150 19 chr3 169990160 169991164 -57533414 + L2 LINE L2 2158 3309 -4 206 367 0 25 chr3 169992256 169992335 -57532243 - L2 LINE L2 -10 3262 3186 713 251 69 20 chr3 169992603 169992850 -57531728 + MER112 DNA MER1_type 2 260 0 2110 110 0 0 chr3 169993017 169993330 -57531248 + AluSx SINE Alu 1 313 0 673 214 94 41 chr3 169994757 169994963 -57529615 - MIR SINE MIR -26 236 8 1949 140 4 0 chr3 169995370 169995648 -57528930 + AluSq SINE Alu 3 281 -32 24 0 0 0 chr3 169996213 169996237 -57528341 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr3 169996308 169996330 -57528248 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr3 169996561 169996590 -57527988 + AT_rich Low_complexity Low_complexity 1 29 0 203 372 86 43 chr3 169996638 169997125 -57527453 - L2 LINE L2 -641 2673 2166 2019 131 0 30 chr3 169997236 169997534 -57527044 + AluSx SINE Alu 1 289 -23 2119 88 30 3 chr3 169997534 169997829 -57526749 + AluSg SINE Alu 1 303 -7 25 51 0 0 chr3 169997911 169997950 -57526628 + AT_rich Low_complexity Low_complexity 1 39 0 206 343 40 10 chr3 169998210 169998309 -57526269 - L2 LINE L2 -1388 1926 1825 2264 137 42 51 chr3 169998854 169999284 -57525294 + MSTB LTR MaLR 1 426 0 24 0 0 0 chr3 169999406 169999430 -57525148 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr3 169999683 169999707 -57524871 + AT_rich Low_complexity Low_complexity 1 24 0 479 309 146 5 chr3 170000370 170000590 -57523988 + MIR SINE MIR 12 262 0 1886 217 29 61 chr3 170001381 170001939 -57522639 + MLT1F LTR MaLR 3 542 0 1361 149 113 23 chr3 170002204 170002396 -57522182 - MER44D DNA MER2_type -1882 609 436 1141 192 12 75 chr3 170002396 170002485 -57522093 - MER8 DNA MER2_type 0 239 146 2633 23 7 3 chr3 170002485 170002794 -57521784 + AluY SINE Alu 1 310 -1 2169 103 4 0 chr3 170002803 170003113 -57521465 + AluY SINE Alu 1 311 0 1141 192 12 75 chr3 170003113 170003267 -57521311 - MER8 DNA MER2_type -101 138 1 1361 149 113 23 chr3 170003267 170003375 -57521203 - MER44D DNA MER2_type -2055 436 12 225 337 44 17 chr3 170003381 170003562 -57521016 - L1ME LINE L1 -304 5866 5681 284 292 52 43 chr3 170003640 170003757 -57520821 - L1ME LINE L1 -615 5549 5435 1386 137 169 12 chr3 170003757 170004012 -57520566 - AluJb SINE Alu -14 298 4 284 292 52 43 chr3 170004012 170004187 -57520391 - L1ME LINE L1 -729 5435 5260 197 321 142 12 chr3 170004700 170004862 -57519716 + L2 LINE L2 3084 3266 -47 21 36 0 0 chr3 170005294 170005322 -57519256 + AT_rich Low_complexity Low_complexity 1 28 0 987 177 0 0 chr3 170006739 170006897 -57517681 - FRAM SINE Alu -24 152 1 1053 113 0 0 chr3 170006920 170007104 -57517474 + AluY SINE Alu 134 317 0 2313 114 0 13 chr3 170007211 170007527 -57517051 + AluSx SINE Alu 1 312 0 2855 194 61 14 chr3 170008426 170009314 -57515264 - L1MC/D LINE L1 -756 5390 4697 1922 108 71 14 chr3 170009317 170009612 -57514966 + AluSx SINE Alu 1 312 0 614 267 111 18 chr3 170009737 170009962 -57514616 + MIR SINE MIR 13 258 -4 2413 74 0 3 chr3 170010807 170011105 -57513473 - AluY SINE Alu -14 297 1 2115 46 8 0 chr3 170011879 170012138 -57512440 - AluY SINE Alu -50 261 1 1773 40 9 5 chr3 170012308 170012530 -57512048 - AluY SINE Alu -3 308 86 180 279 25 63 chr3 170012720 170012799 -57511779 - L2 LINE L2 0 3313 3238 336 315 237 0 chr3 170013310 170013391 -57511187 - L1MC4a LINE L1 -1904 5904 5843 1311 100 96 13 chr3 170013391 170013621 -57510957 - L1MB3 LINE L1 0 6183 5935 336 315 237 0 chr3 170013621 170013771 -57510807 - L1MC4a LINE L1 -1965 5843 5618 838 302 131 40 chr3 170013885 170014743 -57509835 - L1MC4a LINE L1 -748 5398 4463 2426 63 17 3 chr3 170015007 170015309 -57509269 - AluY SINE Alu -5 306 1 782 155 31 0 chr3 170015732 170015861 -57508717 - FLAM_A SINE Alu 0 133 1 2311 76 0 7 chr3 170015908 170016199 -57508379 + AluSc SINE Alu 1 289 -20 2316 95 0 7 chr3 170016459 170016755 -57507823 + AluY SINE Alu 1 294 -17 1219 199 3 36 chr3 170016995 170017332 -57507246 + pTR5 LTR ERV1 743 1068 -1370 1112 218 23 91 chr3 170017812 170018284 -57506294 + MLT1F LTR MaLR 16 455 -87 22 0 0 0 chr3 170019796 170019818 -57504760 + AT_rich Low_complexity Low_complexity 1 22 0 1731 118 118 0 chr3 170020295 170020557 -57504021 + AluSq SINE Alu 2 294 -19 2190 137 3 0 chr3 170020784 170021083 -57503495 - AluSq SINE Alu -13 300 1 25 0 0 0 chr3 170021265 170021290 -57503288 + AT_rich Low_complexity Low_complexity 1 25 0 917 212 0 0 chr3 170022326 170022496 -57502082 - FRAM SINE Alu -6 170 1 28 0 0 0 chr3 170022516 170022544 -57502034 + AT_rich Low_complexity Low_complexity 1 28 0 673 148 0 0 chr3 170022701 170022802 -57501776 + FLAM_C SINE Alu 11 111 -32 578 152 0 30 chr3 170022806 170022905 -57501673 + AluSg/x SINE Alu 197 292 -18 4747 204 80 33 chr3 170023736 170024019 -57500559 + Charlie1a DNA MER1_type 1 269 -2492 2124 111 16 7 chr3 170024019 170024326 -57500252 + AluSq SINE Alu 1 310 -3 4747 204 80 33 chr3 170024326 170025431 -57499147 + Charlie1a DNA MER1_type 269 1454 -1 2330 113 0 0 chr3 170025592 170025893 -57498685 + AluSx SINE Alu 1 301 -11 1698 177 3 24 chr3 170026594 170026888 -57497690 + AluJb SINE Alu 1 288 -24 21 0 0 0 chr3 170026899 170026920 -57497658 + AT_rich Low_complexity Low_complexity 1 21 0 472 261 30 67 chr3 170027041 170027206 -57497372 + MIR3 SINE MIR 45 203 -5 1845 160 0 7 chr3 170028241 170028529 -57496049 + AluJb SINE Alu 1 286 -26 345 213 120 46 chr3 170029811 170029919 -57494659 - Charlie8 DNA MER1_type -2167 250 135 1963 104 25 7 chr3 170030096 170030405 -57494173 + AluSx SINE Alu 1 314 0 22 0 0 0 chr3 170031024 170031046 -57493532 + AT_rich Low_complexity Low_complexity 1 22 0 1165 200 40 0 chr3 170031174 170031399 -57493179 - MIR SINE MIR 0 262 29 4460 209 79 60 chr3 170031584 170031802 -57492776 + L1M4 LINE L1 16 228 -6314 2078 91 22 4 chr3 170031802 170032124 -57492454 + AluSc SINE Alu 1 327 0 4460 209 79 60 chr3 170032124 170033093 -57491485 + L1M4 LINE L1 228 1177 -5365 1946 157 0 20 chr3 170033093 170033393 -57491185 + AluJo SINE Alu 1 294 -18 4460 209 79 60 chr3 170033393 170033405 -57491173 + L1M4 LINE L1 1177 1187 -5355 2530 57 0 0 chr3 170033405 170033701 -57490877 + AluY SINE Alu 1 296 -15 4460 209 79 60 chr3 170033701 170034154 -57490424 + L1M4 LINE L1 1187 1703 -4839 238 206 0 16 chr3 170034159 170034222 -57490356 + FLAM_A SINE Alu 72 133 0 47 75 0 0 chr3 170034222 170034289 -57490289 + AT_rich Low_complexity Low_complexity 1 67 0 352 234 61 72 chr3 170034313 170034410 -57490168 + L1M4 LINE L1 2268 2365 -4281 2096 111 10 16 chr3 170034410 170034716 -57489862 - AluSc SINE Alu -1 308 5 352 234 61 72 chr3 170034716 170034896 -57489682 + L1M4 LINE L1 2365 2542 -4104 1370 178 25 14 chr3 170034906 170035187 -57489391 + L1MB7 LINE L1 5882 6165 -19 21 0 0 0 chr3 170035563 170035584 -57488994 + AT_rich Low_complexity Low_complexity 1 21 0 674 129 73 81 chr3 170035712 170035927 -57488651 + Tigger3(Golem) DNA MER2_type 2 2863 -166 285 210 48 0 chr3 170035937 170035999 -57488579 + Tigger3(Golem) DNA MER2_type 2974 3038 0 237 212 30 0 chr3 170036095 170036161 -57488417 + A-rich Low_complexity Low_complexity 5 72 0 933 236 13 50 chr3 170036896 170037006 -57487572 + L1ME2 LINE L1 5866 5978 -186 2479 65 0 3 chr3 170037006 170037315 -57487263 + AluY SINE Alu 1 308 -3 933 236 13 50 chr3 170037315 170037505 -57487073 + L1ME2 LINE L1 5978 6155 -9 22 0 0 0 chr3 170037552 170037574 -57487004 + AT_rich Low_complexity Low_complexity 1 22 0 2171 129 7 3 chr3 170037799 170038109 -57486469 + AluSp SINE Alu 1 311 -2 23 33 0 0 chr3 170038156 170038186 -57486392 + AT_rich Low_complexity Low_complexity 1 30 0 1509 150 21 49 chr3 170038484 170038771 -57485807 + AluSq SINE Alu 28 306 -7 412 203 0 0 chr3 170039298 170039367 -57485211 + AluJ/FLAM SINE Alu 1 69 -243 2239 87 7 10 chr3 170040038 170040337 -57484241 + AluSx SINE Alu 1 298 -14 318 346 118 8 chr3 170040750 170040877 -57483701 + L2 LINE L2 3127 3267 -5 2445 74 0 3 chr3 170042405 170042716 -57481862 - AluSx SINE Alu -2 310 1 2195 102 0 7 chr3 170043078 170043371 -57481207 + AluSx SINE Alu 1 291 -21 359 258 88 39 chr3 170044237 170044419 -57480159 + L1ME4a LINE L1 5929 6119 -2 466 223 47 0 chr3 170044458 170044606 -57479972 - L1MD3 LINE L1 -15 7980 7826 1754 110 50 57 chr3 170045363 170045664 -57478914 - AluJo SINE Alu -11 301 3 1902 151 10 0 chr3 170045738 170046030 -57478548 - AluJo SINE Alu -17 295 1 541 207 74 0 chr3 170046069 170046190 -57478388 - FLAM_A SINE Alu -3 130 1 1636 192 3 20 chr3 170046372 170046674 -57477904 + AluJo SINE Alu 5 301 -11 25 0 0 0 chr3 170046791 170046816 -57477762 + AT_rich Low_complexity Low_complexity 1 25 0 777 211 43 0 chr3 170046885 170047046 -57477532 + FRAM SINE Alu 1 166 -10 769 68 0 0 chr3 170047300 170047403 -57477175 - HY1 scRNA scRNA -9 103 1 1678 166 7 20 chr3 170047571 170047866 -57476712 + AluJb SINE Alu 1 291 -21 1905 123 19 0 chr3 170048236 170048497 -57476081 + AluSx SINE Alu 1 266 -46 198 0 0 0 chr3 170048502 170048524 -57476054 + (TAAA)n Simple_repeat Simple_repeat 4 25 0 2132 107 38 0 chr3 170049417 170049707 -57474871 + AluSc SINE Alu 1 301 -8 2815 84 152 182 chr3 170049792 170050743 -57473835 - pTR5 LTR ERV1 0 2438 1217 1425 217 109 50 chr3 170050885 170051243 -57473335 - L1ME LINE L1 -644 5522 5187 315 0 0 0 chr3 170051243 170051278 -57473300 + (TA)n Simple_repeat Simple_repeat 1 35 0 2214 112 3 6 chr3 170051278 170051591 -57472987 - AluSx SINE Alu 0 312 1 1425 217 109 50 chr3 170051591 170051879 -57472699 - L1ME LINE L1 -978 5188 4840 3015 223 54 50 chr3 170051889 170052948 -57471630 - L1ME LINE L1 -2280 3866 2804 2323 92 17 0 chr3 170052980 170053274 -57471304 + AluSp SINE Alu 1 299 -14 1753 236 164 36 chr3 170053938 170054159 -57470419 - L2 LINE L2 -609 2705 2514 2352 98 7 0 chr3 170054159 170054465 -57470113 + AluSq SINE Alu 1 308 -5 1753 236 164 36 chr3 170054465 170054638 -57469940 - L2 LINE L2 -800 2514 2364 3090 141 2 0 chr3 170054638 170055065 -57469513 + MSTA LTR MaLR 1 428 0 1753 236 164 36 chr3 170055065 170055382 -57469196 - L2 LINE L2 -950 2364 1902 217 277 0 0 chr3 170055467 170055514 -57469064 + G-rich Low_complexity Low_complexity 2 48 0 2877 10 0 0 chr3 170055781 170056092 -57468486 + AluYa5 SINE Alu 1 311 0 1841 185 0 10 chr3 170056509 170056817 -57467761 + AluJo SINE Alu 1 305 -7 2141 151 20 38 chr3 170056893 170057290 -57467288 + MLT1B LTR MaLR 1 390 0 182 143 48 0 chr3 170058414 170058456 -57466122 + L2 LINE L2 2399 2442 -872 270 190 76 25 chr3 170059514 170059593 -57464985 - L1MC5 LINE L1 -89 7872 7790 2020 106 57 0 chr3 170059685 170059967 -57464611 + AluSg SINE Alu 1 298 -12 22 0 0 0 chr3 170060307 170060329 -57464249 + AT_rich Low_complexity Low_complexity 1 22 0 2268 97 17 0 chr3 170061096 170061395 -57463183 + AluSq SINE Alu 1 304 -9 418 226 214 31 chr3 170061940 170062099 -57462479 - MLT1J LTR MaLR -315 196 9 186 43 0 0 chr3 170062237 170062260 -57462318 + (TC)n Simple_repeat Simple_repeat 1 23 0 744 213 75 0 chr3 170062268 170062442 -57462136 + MLT1B LTR MaLR 188 374 -16 788 202 74 44 chr3 170062692 170062819 -57461759 + MER3 DNA MER1_type 1 138 -71 1713 174 14 7 chr3 170062819 170063107 -57461471 - AluSx SINE Alu -22 290 1 788 202 74 44 chr3 170063107 170063182 -57461396 + MER3 DNA MER1_type 138 209 0 1562 160 20 34 chr3 170063403 170063743 -57460835 - AluJo SINE Alu 0 336 1 955 206 10 57 chr3 170063743 170063952 -57460626 - MER20 DNA MER1_type -20 199 1 326 143 0 32 chr3 170064022 170064085 -57460493 + L2 LINE L2 2202 2262 -1052 272 256 146 22 chr3 170064081 170064106 -57460472 + L2 LINE L2 3159 3180 -133 * 4971 74 36 11 chr3 170064106 170064766 -57459812 - L1PA12 LINE L1 -1 6167 5491 272 256 146 22 chr3 170064766 170064877 -57459701 + L2 LINE L2 3180 3312 -1 385 145 16 0 chr3 170064991 170065053 -57459525 - Tigger4(Zombi) DNA MER2_type -1 2730 2668 644 125 0 0 chr3 170065081 170065169 -57459409 + AluJ/FLAM SINE Alu 2 89 -223 903 171 0 7 chr3 170065169 170065315 -57459263 + AluJo/FRAM SINE Alu 138 282 -30 4872 127 13 55 chr3 170065316 170065690 -57458888 - Tigger4(Zombi) DNA MER2_type -56 2675 2287 2248 74 0 65 chr3 170065690 170066015 -57458563 + AluY SINE Alu 1 304 -7 4872 127 13 55 chr3 170066015 170066131 -57458447 - Tigger4(Zombi) DNA MER2_type -444 2287 2168 2693 142 9 49 chr3 170066131 170066582 -57457996 + Tigger2a DNA MER2_type 1 433 -1 4872 127 13 55 chr3 170066582 170066838 -57457740 - Tigger4(Zombi) DNA MER2_type -563 2168 1964 2059 153 3 0 chr3 170066838 170067146 -57457432 - AluSx SINE Alu -3 309 1 4872 127 13 55 chr3 170067146 170067239 -57457339 - Tigger4(Zombi) DNA MER2_type -767 1964 1869 425 132 0 0 chr3 170067235 170067303 -57457275 - Tigger4(Zombi) DNA MER2_type -2653 78 11 * 2263 203 57 5 chr3 170067588 170068026 -57456552 - LOR1b LTR ERV1 0 461 1 332 161 0 0 chr3 170068027 170068083 -57456495 - LOR1b-int LTR ERV1 -1 8119 8064 238 241 36 48 chr3 170068083 170068166 -57456412 - MLT1J LTR MaLR -378 133 52 1415 94 10 5 chr3 170068166 170068368 -57456210 - LOR1b-int LTR ERV1 -2117 6003 5801 * 15722 103 27 21 chr3 170068358 170069664 -57454914 - LOR1b-int LTR ERV1 -2596 5524 4196 2274 70 42 0 chr3 170069664 170069948 -57454630 - AluY SINE Alu -15 296 1 15722 103 27 21 chr3 170069948 170071047 -57453531 - LOR1b-int LTR ERV1 -3924 4196 3105 1785 114 4 0 chr3 170071048 170071285 -57453293 + AluSx SINE Alu 1 238 -74 4457 101 108 111 chr3 170071285 170072664 -57451914 + pTR5 LTR ERV1 745 2438 0 463 147 0 0 chr3 170072665 170072733 -57451845 + AluSx SINE Alu 229 296 -14 9891 107 56 23 chr3 170072733 170073856 -57450722 - LOR1b-int LTR ERV1 -5013 3107 2022 2498 62 0 0 chr3 170073856 170074160 -57450418 - AluY SINE Alu -7 304 1 9891 107 56 23 chr3 170074160 170074683 -57449895 - LOR1b-int LTR ERV1 -6098 2022 1518 2046 130 7 0 chr3 170074683 170075008 -57449570 - AluSx SINE Alu 0 327 1 9891 107 56 23 chr3 170075008 170075569 -57449009 - LOR1b-int LTR ERV1 -6602 1518 977 2195 113 8 100 chr3 170075569 170075960 -57448618 - THE1A LTR MaLR 0 355 1 9891 107 56 23 chr3 170075960 170076438 -57448140 - LOR1b-int LTR ERV1 -7143 977 216 1804 180 62 25 chr3 170076450 170076850 -57447728 - LOR1b-int LTR ERV1 -7702 418 4 2062 163 59 55 chr3 170076852 170077283 -57447295 - LOR1b LTR ERV1 0 461 26 2318 111 0 61 chr3 170077283 170077642 -57446936 + MER1B DNA MER1_type 1 337 0 2062 163 59 55 chr3 170077642 170077669 -57446909 - LOR1b LTR ERV1 -435 26 1 2093 123 0 13 chr3 170077865 170078165 -57446413 - AluSx SINE Alu -16 296 1 228 281 10 52 chr3 170078626 170078722 -57445856 - L2 LINE L2 0 3313 3222 258 197 254 0 chr3 170082710 170082781 -57441797 - MER5B DNA MER1_type 0 178 90 441 274 20 59 chr3 170082807 170082960 -57441618 - L2 LINE L2 -454 2860 2714 211 174 22 22 chr3 170082986 170083032 -57441546 - L2 LINE L2 -4 3309 3264 3569 209 60 44 chr3 170083111 170084121 -57440457 - L1ME1 LINE L1 -18 6148 5130 279 0 0 0 chr3 170084121 170084152 -57440426 + (TA)n Simple_repeat Simple_repeat 1 31 0 3569 209 60 44 chr3 170084152 170084178 -57440400 - L1ME1 LINE L1 -1036 5130 5106 186 246 53 9 chr3 170084207 170084321 -57440257 + CT-rich Low_complexity Low_complexity 2 120 0 * 569 243 0 27 chr3 170084313 170084498 -57440080 + C-rich Low_complexity Low_complexity 1 180 0 380 212 22 49 chr3 170084511 170084695 -57439883 + CT-rich Low_complexity Low_complexity 1 179 0 257 277 0 31 chr3 170084695 170084760 -57439818 + C-rich Low_complexity Low_complexity 1 63 0 377 295 0 23 chr3 170084804 170085005 -57439573 + C-rich Low_complexity Low_complexity 1 196 0 386 333 11 17 chr3 170085054 170085231 -57439347 + C-rich Low_complexity Low_complexity 1 176 0 15424 123 33 23 chr3 170085689 170087702 -57436876 + Tigger1 DNA MER2_type 1 2044 -374 2032 112 7 3 chr3 170087702 170088027 -57436551 - AluSp SINE Alu 0 326 1 15424 123 33 23 chr3 170088027 170088406 -57436172 + Tigger1 DNA MER2_type 2044 2418 0 209 180 40 0 chr3 170088804 170088854 -57435724 + (CAGA)n Simple_repeat Simple_repeat 3 54 0 400 290 152 0 chr3 170088972 170089110 -57435468 - MER5B DNA MER1_type -19 159 1 2012 123 75 31 chr3 170089721 170090080 -57434498 + THE1C LTR MaLR 1 375 0 254 118 0 0 chr3 170090549 170090583 -57433995 + AluJb SINE Alu 87 120 -182 226 194 32 0 chr3 170090583 170090645 -57433933 + (TA)n Simple_repeat Simple_repeat 1 64 0 720 184 0 0 chr3 170090654 170090763 -57433815 + AluSc SINE Alu 125 233 -76 563 293 26 46 chr3 170090920 170091162 -57433416 + MIR SINE MIR 5 241 -21 4996 159 32 21 chr3 170091346 170092428 -57432150 + L1MB3 LINE L1 5087 6183 0 332 56 167 0 chr3 170092922 170092976 -57431602 - Alu SINE Alu -235 64 2 657 314 48 28 chr3 170093500 170093923 -57430655 + L1ME4a LINE L1 5488 5826 -295 484 257 35 42 chr3 170095357 170095501 -57429077 + MIR SINE MIR 50 192 -70 2342 99 0 10 chr3 170096154 170096466 -57428112 - AluSc SINE Alu 0 309 1 2379 90 7 0 chr3 170096470 170096780 -57427798 - AluSp SINE Alu -1 312 1 414 369 75 21 chr3 170096782 170097023 -57427555 + L3 LINE CR1 265 518 -1059 460 270 119 6 chr3 170097028 170097187 -57427391 - MER5B DNA MER1_type 0 178 2 185 354 24 24 chr3 170097191 170097273 -57427305 + L3 LINE CR1 615 696 -881 543 285 81 90 chr3 170097293 170097714 -57426864 - L2 LINE L2 -5 3267 2851 686 293 179 17 chr3 170097756 170098229 -57426349 + L2 LINE L2 2743 3313 0 257 216 54 27 chr3 170098517 170098591 -57425987 - L1MC5 LINE L1 -48 7913 7838 2243 213 70 39 chr3 170098592 170098727 -57425851 - L1MC5 LINE L1 -168 7793 7664 2297 88 0 26 chr3 170098727 170099035 -57425543 + AluSg SINE Alu 2 301 -9 2243 213 70 39 chr3 170099035 170099345 -57425233 - L1MC5 LINE L1 -297 7664 7365 1354 179 80 3 chr3 170099345 170099646 -57424932 + MER33 DNA MER1_type 1 324 0 2243 213 70 39 chr3 170099646 170099951 -57424627 - L1MC5 LINE L1 -596 7365 7018 312 276 60 17 chr3 170100574 170100690 -57423888 - MIR3 SINE MIR -21 187 67 329 301 201 24 chr3 170101520 170101932 -57422646 - L2 LINE L2 -571 2743 2259 2147 100 0 7 chr3 170102523 170102804 -57421774 - AluSq SINE Alu -34 279 1 2356 92 0 7 chr3 170103031 170103336 -57421242 - AluSx SINE Alu -9 303 1 2492 64 0 32 chr3 170103581 170103894 -57420684 - AluY SINE Alu -8 303 1 246 297 174 0 chr3 170104566 170104704 -57419874 + MIR3 SINE MIR 17 178 -30 198 296 252 7 chr3 170104794 170104921 -57419657 + MIR3 SINE MIR 9 168 -40 358 329 27 27 chr3 170104921 170105070 -57419508 - MER5B DNA MER1_type -3 175 27 216 278 80 73 chr3 170104939 170105090 -57419488 + MER5A DNA MER1_type 32 183 -6 * 1824 149 3 37 chr3 170105621 170105815 -57418763 - AluJo SINE Alu -1 311 131 198 0 0 0 chr3 170105815 170105837 -57418741 + (TTA)n Simple_repeat Simple_repeat 2 23 0 1824 149 3 37 chr3 170105837 170105964 -57418614 - AluJo SINE Alu -181 131 1 261 0 0 0 chr3 170106219 170106248 -57418330 + (A)n Simple_repeat Simple_repeat 1 29 0 216 0 0 0 chr3 170110237 170110261 -57414317 + (TAAA)n Simple_repeat Simple_repeat 2 25 0 1459 217 33 115 chr3 170110430 170110485 -57414093 - L1MC4 LINE L1 -2 8040 7982 1636 181 0 0 chr3 170110485 170110739 -57413839 + AluJo SINE Alu 29 282 -30 1459 217 33 115 chr3 170110739 170111439 -57413139 - L1MC4 LINE L1 -60 7982 7347 406 286 71 0 chr3 170112348 170112474 -57412104 - L2 LINE L2 0 3272 3138 813 179 0 0 chr3 170113211 170113334 -57411244 + FLAM_C SINE Alu 1 123 -10 224 280 113 48 chr3 170113709 170113877 -57410701 - MIR3 SINE MIR -13 195 17 1910 188 0 0 chr3 170113987 170114285 -57410293 + AluJo SINE Alu 1 298 -14 884 222 113 1 chr3 170115536 170115756 -57408822 - MIR SINE MIR -17 245 1 1640 203 21 12 chr3 170115948 170116215 -57408363 + MER2 DNA MER2_type 2 274 -70 2306 103 13 3 chr3 170116215 170116517 -57408061 - AluSx SINE Alu -7 305 1 1640 203 21 12 chr3 170116517 170116589 -57407989 + MER2 DNA MER2_type 274 344 0 237 255 216 10 chr3 170119854 170119956 -57404622 - L2 LINE L2 -1 3312 3190 23 33 0 0 chr3 170120060 170120090 -57404488 + AT_rich Low_complexity Low_complexity 1 30 0 794 205 26 13 chr3 170120187 170120343 -57404235 - FRAM SINE Alu -8 158 1 832 247 57 3 chr3 170121157 170121453 -57403125 - L1ME4a LINE L1 -173 5948 5637 212 217 72 36 chr3 170121999 170122082 -57402496 + MIR SINE MIR 118 203 -59 201 147 0 0 chr3 170123730 170123764 -57400814 + (TG)n Simple_repeat Simple_repeat 1 34 0 186 316 38 60 chr3 170123782 170123915 -57400663 + L2 LINE L2 3133 3262 -10 213 293 61 12 chr3 170123988 170124070 -57400508 + MIR SINE MIR 21 106 -102 788 201 39 0 chr3 170124244 170124398 -57400180 - MER20 DNA MER1_type -54 165 6 325 323 54 0 chr3 170124471 170124601 -57399977 - HAL1b LINE L1 -2 1346 1210 202 271 23 62 chr3 170124687 170124816 -57399762 + MIR SINE MIR 93 216 -46 352 346 89 15 chr3 170125126 170125328 -57399250 - MIR SINE MIR -14 248 32 2399 79 0 0 chr3 170125700 170125991 -57398587 + AluSc SINE Alu 1 291 -18 2176 109 10 7 chr3 170126398 170126701 -57397877 - AluSg SINE Alu -3 307 4 384 288 139 51 chr3 170129188 170129403 -57395175 + MIR SINE MIR 24 257 -5 258 309 16 49 chr3 170129490 170129613 -57394965 + L2 LINE L2 2966 3084 -188 1607 65 30 4 chr3 170130041 170130272 -57394306 + L1MA1 LINE L1 6062 6298 -4 2109 148 3 0 chr3 170130454 170130765 -57393813 - AluSx SINE Alu 0 312 1 1024 99 0 0 chr3 170130999 170131130 -57393448 + AluSg SINE Alu 1 131 -179 228 111 0 0 chr3 170132219 170132255 -57392323 - L2 LINE L2 -8 3305 3270 2412 97 0 7 chr3 170133114 170133424 -57391154 - AluSg SINE Alu -2 308 1 333 0 0 0 chr3 170133739 170133776 -57390802 + (CA)n Simple_repeat Simple_repeat 2 38 0 26 0 0 0 chr3 170134658 170134684 -57389894 + AT_rich Low_complexity Low_complexity 1 26 0 2062 196 168 20 chr3 170135338 170135950 -57388628 + L1MC4 LINE L1 7284 7986 -56 234 0 0 0 chr3 170137084 170137110 -57387468 + (TG)n Simple_repeat Simple_repeat 2 27 0 1056 183 102 40 chr3 170138829 170139152 -57385426 + MER2 DNA MER2_type 2 344 0 351 0 0 0 chr3 170141131 170141170 -57383408 + (CA)n Simple_repeat Simple_repeat 2 40 0 822 264 170 24 chr3 170142214 170142425 -57382153 + L2 LINE L2 2377 2556 -757 216 0 0 0 chr3 170142425 170142449 -57382129 + (ATG)n Simple_repeat Simple_repeat 2 25 0 822 264 170 24 chr3 170142449 170142848 -57381730 + L2 LINE L2 2556 3087 -226 299 310 101 8 chr3 170142974 170143103 -57381475 - L2 LINE L2 -5 3267 3127 23 33 0 0 chr3 170144191 170144221 -57380357 + AT_rich Low_complexity Low_complexity 1 30 0 1973 129 11 3 chr3 170144288 170144574 -57380004 + AluSx SINE Alu 1 288 -24 442 278 66 33 chr3 170145232 170145383 -57379195 + MIR3 SINE MIR 47 202 -6 2547 39 13 3 chr3 170145448 170145754 -57378824 - AluY SINE Alu -2 309 1 187 309 0 0 chr3 170146165 170146207 -57378371 + L2 LINE L2 3155 3196 -76 267 31 0 0 chr3 170146521 170146553 -57378025 + (TTG)n Simple_repeat Simple_repeat 2 33 0 933 246 183 8 chr3 170146878 170147333 -57377245 + L2 LINE L2 2707 3251 -62 467 267 124 19 chr3 170148834 170148995 -57375583 + MER5B DNA MER1_type 1 178 0 946 212 22 0 chr3 170149078 170149262 -57375316 - MER5A DNA MER1_type 0 189 2 252 0 0 0 chr3 170149911 170149939 -57374639 + (A)n Simple_repeat Simple_repeat 1 28 0 2440 67 3 7 chr3 170150691 170150990 -57373588 + AluY SINE Alu 1 298 -13 461 268 122 54 chr3 170151366 170151718 -57372860 + L1ME4a LINE L1 2985 3356 -2790 2289 112 0 0 chr3 170151795 170152098 -57372480 + AluSx SINE Alu 1 303 -9 260 324 50 46 chr3 170152213 170152494 -57372084 + L1ME4a LINE L1 3623 3904 -2242 250 283 132 107 chr3 170152534 170152852 -57371726 + L2 LINE L2 2939 3264 -49 255 275 49 35 chr3 170152925 170153067 -57371511 + L1ME4a LINE L1 4023 4166 -1980 309 247 77 69 chr3 170153354 170153743 -57370835 + L1ME4a LINE L1 4527 4918 -1228 425 252 179 9 chr3 170154336 170154401 -57370177 + MER112 DNA MER1_type 1 54 -202 246 62 0 0 chr3 170154401 170154433 -57370145 + (CA)n Simple_repeat Simple_repeat 2 33 0 425 252 179 9 chr3 170154433 170154585 -57369993 + MER112 DNA MER1_type 54 255 -1 581 278 29 5 chr3 170154733 170154942 -57369636 + L1ME4a LINE L1 5713 5926 -195 22 56 0 0 chr3 170155001 170155037 -57369541 + AT_rich Low_complexity Low_complexity 1 36 0 326 298 11 11 chr3 170155232 170155326 -57369252 - MIR SINE MIR -111 151 58 206 311 0 0 chr3 170155350 170155395 -57369183 + MIR SINE MIR 108 152 -110 299 239 185 8 chr3 170155425 170155555 -57369023 + MIR SINE MIR 103 255 -7 2175 144 0 0 chr3 170155646 170155958 -57368620 - AluSx SINE Alu 0 312 1 534 289 88 26 chr3 170155986 170156522 -57368056 + L1MC5 LINE L1 4379 4947 -1199 1166 281 20 33 chr3 170156548 170157003 -57367575 + L1MC5 LINE L1 5440 5888 -1920 2031 72 4 11 chr3 170157045 170157307 -57367271 + AluY SINE Alu 44 303 -8 1631 233 67 82 chr3 170157445 170158228 -57366350 + L1MC5 LINE L1 6278 7041 -920 3484 58 0 7 chr3 170158228 170158679 -57365899 + LTR7 LTR ERV1 1 448 -2 1631 233 67 82 chr3 170158679 170159017 -57365561 + L1MC5 LINE L1 7041 7382 -579 1886 138 7 7 chr3 170159019 170159316 -57365262 - MER1B DNA MER1_type -1 338 42 323 188 94 10 chr3 170159381 170159477 -57365101 + L1MC5 LINE L1 7379 7482 -479 469 214 92 61 chr3 170159478 170159707 -57364871 + L1MC5 LINE L1 7515 7750 -211 196 299 119 73 chr3 170160124 170160385 -57364193 + L2 LINE L2 2995 3267 -5 446 261 119 61 chr3 170160574 170160835 -57363743 + L1ME4a LINE L1 5834 6109 -12 28 61 0 0 chr3 170161733 170161782 -57362796 + AT_rich Low_complexity Low_complexity 1 49 0 486 194 144 44 chr3 170161789 170161914 -57362664 - MIR SINE MIR -11 251 105 2144 111 6 29 chr3 170161914 170162229 -57362349 - AluSx SINE Alu -4 308 1 486 194 144 44 chr3 170162229 170162263 -57362315 - MIR SINE MIR -157 105 76 360 0 0 0 chr3 170162527 170162567 -57362011 + (ATTG)n Simple_repeat Simple_repeat 2 41 0 2283 50 14 7 chr3 170162567 170162848 -57361730 - AluY SINE Alu -28 283 1 2179 111 3 16 chr3 170163007 170163322 -57361256 - AluSx SINE Alu -1 311 1 2461 74 3 7 chr3 170164027 170164336 -57360242 - AluY SINE Alu -3 308 1 2368 77 0 3 chr3 170164336 170164634 -57359944 - AluY SINE Alu -14 297 1 1972 166 0 0 chr3 170164684 170164991 -57359587 - AluSx SINE Alu -5 307 1 303 300 58 25 chr3 170164995 170165115 -57359463 - MIR SINE MIR -54 208 85 550 340 105 42 chr3 170165127 170165867 -57358711 - L2 LINE L2 -1 3271 2499 294 293 78 0 chr3 170165871 170165987 -57358591 - L2 LINE L2 -976 2338 2214 295 278 65 28 chr3 170165988 170166096 -57358482 + MIR SINE MIR 2 113 -149 349 304 64 5 chr3 170166100 170166294 -57358284 - L2 LINE L2 -232 3081 2605 4271 161 7 44 chr3 170166307 170167301 -57357277 + L1MB4 LINE L1 5161 6122 -58 506 286 0 0 chr3 170169130 170169256 -57355322 - MER117 DNA MER1_type -2 195 70 240 167 0 0 chr3 170171876 170171918 -57352660 - L2 LINE L2 0 3313 3272 23 0 0 0 chr3 170171997 170172020 -57352558 + AT_rich Low_complexity Low_complexity 1 23 0 760 220 11 66 chr3 170172198 170172484 -57352094 - L1MC5 LINE L1 -51 7910 7641 625 307 0 0 chr3 170172746 170172896 -57351682 - MIR SINE MIR -101 161 12 2113 69 35 63 chr3 170173439 170173757 -57350821 + AluY SINE Alu 1 309 -2 378 0 0 0 chr3 170175059 170175101 -57349477 + (TG)n Simple_repeat Simple_repeat 2 43 0 472 330 0 29 chr3 170175341 170175514 -57349064 - MER5A DNA MER1_type -3 186 19 1345 229 27 12 chr3 170177553 170177890 -57346688 - MLT1E3 LTR MaLR -8 616 275 2371 104 0 0 chr3 170178328 170178626 -57345952 - AluSg SINE Alu -12 298 1 1043 181 140 74 chr3 170178769 170179105 -57345473 + MER93b LTR ERV1 16 373 0 220 258 16 32 chr3 170180149 170180211 -57344367 - L2 LINE L2 -4 3309 3249 2507 108 19 8 chr3 170180760 170181120 -57343458 + THE1B LTR MaLR 1 364 0 1029 97 13 0 chr3 170181120 170181274 -57343304 + THE1B-int LTR MaLR 1 156 -1424 1135 95 0 6 chr3 170181309 170181467 -57343111 + THE1B LTR MaLR 208 364 0 23 0 0 0 chr3 170181799 170181822 -57342756 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr3 170181993 170182022 -57342556 + AT_rich Low_complexity Low_complexity 1 29 0 482 224 105 13 chr3 170182454 170182606 -57341972 - MIR SINE MIR 0 262 97 218 333 42 58 chr3 170183485 170183605 -57340973 + L2 LINE L2 3136 3253 -19 1962 144 15 12 chr3 170183661 170183994 -57340584 - MER7A DNA MER2_type -13 333 2 280 194 149 0 chr3 170184559 170184626 -57339952 - L2 LINE L2 0 3313 3237 581 245 92 27 chr3 170184627 170184811 -57339767 - L2 LINE L2 -38 3275 3080 2179 63 0 63 chr3 170185645 170185981 -57338597 + AluY SINE Alu 1 317 0 23 0 0 0 chr3 170187208 170187231 -57337347 + AT_rich Low_complexity Low_complexity 1 23 0 2645 62 6 3 chr3 170187920 170188260 -57336318 - L1PA10 LINE L1 -4 6164 5824 2062 99 0 0 chr3 170188782 170189044 -57335534 - AluSc SINE Alu -24 285 24 241 217 14 14 chr3 170189084 170189153 -57335425 + L1MC5 LINE L1 7716 7784 -177 251 277 85 31 chr3 170189335 170189465 -57335113 + MLT1J2 LTR MaLR 72 208 -242 387 251 159 42 chr3 170189468 170189585 -57334993 + MLT1L LTR MaLR 344 446 -169 2108 126 0 0 chr3 170189585 170189871 -57334707 + AluSx SINE Alu 1 286 -26 387 251 159 42 chr3 170189871 170189992 -57334586 + MLT1L LTR MaLR 446 610 -5 480 269 134 39 chr3 170191388 170191918 -57332660 - L1ME4a LINE L1 -208 5913 5329 1321 174 60 64 chr3 170192447 170192745 -57331833 + AluJo SINE Alu 1 297 -15 374 174 0 12 chr3 170192745 170192831 -57331747 + G-rich Low_complexity Low_complexity 1 85 0 3547 17 0 0 chr3 170193684 170194092 -57330486 - L1PA2 LINE L1 -11 6144 5737 1733 28 0 0 chr3 170194092 170194303 -57330275 + L1PA2 LINE L1 5550 5760 -395 257 323 108 0 chr3 170195082 170195175 -57329403 + MIR SINE MIR 20 122 -140 2229 112 7 0 chr3 170195339 170195633 -57328945 - AluY SINE Alu -15 296 1 8712 215 21 58 chr3 170196293 170199522 -57325056 + L1P3 LINE L1 10 3139 -3322 2413 82 0 0 chr3 170199522 170199815 -57324763 + AluY SINE Alu 1 293 -18 8712 215 21 58 chr3 170199815 170199943 -57324635 + L1P3 LINE L1 3139 3270 -3191 4216 145 60 35 chr3 170199948 170200389 -57324189 - MER4D LTR ERV1 -7 869 441 2406 96 0 0 chr3 170200389 170200690 -57323888 + AluY SINE Alu 1 301 -10 4216 145 60 35 chr3 170200690 170201130 -57323448 - MER4D LTR ERV1 -435 441 1 3613 179 27 27 chr3 170201130 170201834 -57322744 + MER21B LTR ERV1 146 849 -14 1350 256 67 34 chr3 170201858 170202440 -57322138 + L1MC4 LINE L1 7347 7947 -95 841 167 0 0 chr3 170203282 170203414 -57321164 + FLAM_C SINE Alu 1 132 -1 207 0 0 0 chr3 170203572 170203595 -57320983 + (TA)n Simple_repeat Simple_repeat 2 24 0 306 73 0 0 chr3 170203595 170203636 -57320942 + (CA)n Simple_repeat Simple_repeat 2 42 0 299 264 20 34 chr3 170203657 170203805 -57320773 + Charlie7 DNA MER1_type 2467 2612 0 586 206 213 0 chr3 170203814 170203969 -57320609 - MER5A DNA MER1_type -1 188 1 1128 187 48 0 chr3 170204043 170204252 -57320326 + MER20 DNA MER1_type 1 219 0 452 340 24 89 chr3 170204308 170204690 -57319888 + L2 LINE L2 2913 3269 -3 1308 222 43 9 chr3 170205227 170205551 -57319027 + MER58B DNA MER1_type 7 341 0 872 206 61 0 chr3 170206568 170206733 -57317845 - AluJo SINE Alu -26 286 112 268 197 15 76 chr3 170207640 170207706 -57316872 + L2 LINE L2 3208 3269 -3 670 296 168 3 chr3 170207989 170208280 -57316298 + LTR16A LTR ERVL 95 433 -17 21 82 0 0 chr3 170209102 170209151 -57315427 + AT_rich Low_complexity Low_complexity 1 49 0 22 0 0 0 chr3 170210720 170210742 -57313836 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr3 170210792 170210821 -57313757 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr3 170211117 170211137 -57313441 + (CA)n Simple_repeat Simple_repeat 1 20 0 186 143 48 0 chr3 170211240 170211303 -57313275 + (CA)n Simple_repeat Simple_repeat 1 66 0 1246 237 79 72 chr3 170211713 170212451 -57312127 - L2 LINE L2 -1 3312 2554 180 77 0 0 chr3 170212485 170212511 -57312067 + (CAAAAA)n Simple_repeat Simple_repeat 3 28 0 2436 83 0 3 chr3 170213018 170213330 -57311248 - AluY SINE Alu 0 311 1 306 275 84 42 chr3 170213605 170213747 -57310831 - MIR SINE MIR -6 256 109 539 302 24 18 chr3 170214659 170214828 -57309750 - MIR3 SINE MIR -2 206 37 180 68 45 23 chr3 170214868 170214912 -57309666 + (CCAA)n Simple_repeat Simple_repeat 2 46 0 2154 122 0 0 chr3 170215085 170215403 -57309175 - AluSq SINE Alu 0 318 1 30 27 0 0 chr3 170216163 170216200 -57308378 + AT_rich Low_complexity Low_complexity 1 37 0 254 185 0 74 chr3 170216315 170216369 -57308209 - L2 LINE L2 -4 3268 3219 23 0 0 0 chr3 170216370 170216393 -57308185 + AT_rich Low_complexity Low_complexity 1 23 0 181 250 150 0 chr3 170217459 170217519 -57307059 + MER5B DNA MER1_type 76 144 -34 1954 142 0 0 chr3 170218220 170218534 -57306044 + AluJb SINE Alu 1 314 0 975 191 13 0 chr3 170218539 170218742 -57305836 + AluSg/x SINE Alu 125 329 0 418 194 42 21 chr3 170219133 170219277 -57305301 - L1ME4a LINE L1 -40 6081 5935 25 75 0 0 chr3 170219393 170219446 -57305132 + AT_rich Low_complexity Low_complexity 1 53 0 13039 173 45 72 chr3 170219725 170222175 -57302403 + L1MA4A LINE L1 22 2537 -4468 1537 221 17 3 chr3 170222175 170222464 -57302114 + AluJo SINE Alu 1 293 -19 13039 173 45 72 chr3 170222464 170224041 -57300537 + L1MA4A LINE L1 2537 4156 -2849 2175 136 0 0 chr3 170224041 170224343 -57300235 + AluSx SINE Alu 1 302 -10 13039 173 45 72 chr3 170224343 170226496 -57298082 + L1MA4A LINE L1 4156 5972 -1033 225 94 0 0 chr3 170226496 170226528 -57298050 + (TAA)n Simple_repeat Simple_repeat 1 32 0 13039 173 45 72 chr3 170226528 170227530 -57297048 + L1MA4A LINE L1 5972 7000 -5 22 70 0 0 chr3 170228235 170228278 -57296300 + AT_rich Low_complexity Low_complexity 1 43 0 421 311 40 61 chr3 170228879 170228961 -57295617 + L1MC4a LINE L1 5530 5612 -2196 1623 176 20 20 chr3 170228961 170229256 -57295322 + AluJb SINE Alu 9 303 -9 421 311 40 61 chr3 170229256 170229345 -57295233 + L1MC4a LINE L1 5612 5701 -2107 2407 84 3 0 chr3 170229345 170229643 -57294935 + AluSp SINE Alu 1 299 -14 421 311 40 61 chr3 170229643 170229866 -57294712 + L1MC4a LINE L1 5701 5917 -1891 228 226 83 48 chr3 170230040 170230124 -57294454 + MER63 DNA MER1_type 662 748 -312 335 299 17 17 chr3 170230192 170230309 -57294269 + CT-rich Low_complexity Low_complexity 1 117 0 246 302 171 23 chr3 170231091 170231220 -57293358 + MIR3 SINE MIR 39 186 -22 585 373 60 17 chr3 170232710 170233008 -57291570 - L2 LINE L2 -8 3264 2954 849 342 50 35 chr3 170233020 170233658 -57290920 - L2 LINE L2 -528 2786 2139 40 49 0 0 chr3 170233664 170233725 -57290853 + AT_rich Low_complexity Low_complexity 1 61 0 951 161 0 0 chr3 170233802 170233945 -57290633 - FLAM_C SINE Alu 0 143 1 1024 99 0 0 chr3 170234179 170234310 -57290268 + AluSg SINE Alu 1 131 -179 228 111 0 0 chr3 170235399 170235435 -57289143 - L2 LINE L2 -8 3305 3270 384 288 139 51 chr3 170238650 170238865 -57285713 + MIR SINE MIR 24 257 -5 258 309 16 49 chr3 170238952 170239075 -57285503 + L2 LINE L2 2966 3084 -188 1607 65 30 4 chr3 170239503 170239734 -57284844 + L1MA1 LINE L1 6062 6298 -4 2074 151 3 0 chr3 170239916 170240227 -57284351 - AluSx SINE Alu 0 312 1 261 325 8 34 chr3 170240722 170240839 -57283739 + L3 LINE CR1 1269 1382 -195 196 191 32 111 chr3 170240899 170240962 -57283616 + MIR3 SINE MIR 145 202 -6 313 356 24 1 chr3 170241085 170241226 -57283352 + MIR SINE MIR 40 183 -61 355 291 167 17 chr3 170242221 170242430 -57282148 - MIR SINE MIR -3 259 23 1043 178 9 9 chr3 170242679 170242898 -57281680 + MER90 LTR ERV1 1 219 -395 2776 114 27 14 chr3 170242899 170243491 -57281087 - MER4E LTR ERV1 0 766 1 1533 190 28 41 chr3 170243502 170243896 -57280682 + MER90 LTR ERV1 226 614 0 368 299 90 14 chr3 170243926 170244070 -57280508 + L2 LINE L2 2195 2349 -965 * 468 280 153 6 chr3 170244056 170244213 -57280365 - MER5A DNA MER1_type -6 183 4 667 208 152 6 chr3 170244261 170244511 -57280067 + L1MCa LINE L1 4 265 -5780 957 64 57 126 chr3 170244512 170244792 -57279786 + MER4-int LTR ERV1 531 1284 -4266 * 1158 116 16 56 chr3 170244790 170245040 -57279538 + MER4-int LTR ERV1 1771 2010 -4588 1142 140 75 19 chr3 170245040 170245254 -57279324 - LTR8 LTR ERV1 0 691 466 3967 121 60 33 chr3 170245258 170246198 -57278380 + pTR5 LTR ERV1 737 2025 -413 265 286 10 0 chr3 170246198 170246296 -57278282 + LTR30 LTR ERV1 544 642 -80 3621 118 29 2 chr3 170246299 170247127 -57277451 + HERV9 LTR ERV1 17 584 -1935 493 90 0 0 chr3 170247116 170247183 -57277395 + LTR12 LTR ERV1 599 665 -49 * 1597 212 22 45 chr3 170247183 170247692 -57276886 - LTR8 LTR ERV1 -194 497 1 2272 92 36 16 chr3 170247693 170248189 -57276389 + MER4-int LTR ERV1 1739 3147 -3451 216 158 0 0 chr3 170248194 170248232 -57276346 + (TA)n Simple_repeat Simple_repeat 2 39 0 673 142 26 0 chr3 170248300 170248413 -57276165 + MER4A LTR ERV1 549 664 0 1199 253 102 21 chr3 170248428 170248800 -57275778 + L2 LINE L2 2349 2750 -564 3029 142 38 66 chr3 170248809 170249541 -57275037 + LTR1B LTR ERV1 1 781 -45 26293 155 17 12 chr3 170249542 170249757 -57274821 + HUERS-P2 LTR ERV1 152 364 -6656 2351 107 0 0 chr3 170249757 170250066 -57274512 + AluSc SINE Alu 1 309 0 26293 155 17 12 chr3 170250066 170256017 -57268561 + HUERS-P2 LTR ERV1 364 6603 -417 2134 98 19 6 chr3 170256039 170256355 -57268223 + HUERS-P2 LTR ERV1 2767 3086 -2 3544 143 70 18 chr3 170256355 170257087 -57267491 + LTR1B LTR ERV1 1 785 0 1217 283 25 67 chr3 170257089 170257656 -57266922 + L2 LINE L2 2765 3305 -8 3911 154 54 4 chr3 170257795 170258483 -57266095 + MER72 LTR ERV1 1 722 0 279 278 157 9 chr3 170258509 170258617 -57265961 - MIR SINE MIR -133 129 6 182 335 43 61 chr3 170258568 170258732 -57265846 + MIR3 SINE MIR 43 203 -5 * 2026 135 7 3 chr3 170259578 170259874 -57264704 + AluSx SINE Alu 6 302 -10 242 307 31 31 chr3 170259908 170260035 -57264543 - MARNA DNA Mariner -405 181 55 1591 186 0 25 chr3 170260035 170260310 -57264268 - AluJo SINE Alu -15 297 30 3658 172 5 58 chr3 170261498 170262260 -57262318 + MER72 LTR ERV1 1 722 0 18978 143 31 15 chr3 170262388 170264668 -57259910 - L1MA3 LINE L1 0 7724 5484 539 89 13 0 chr3 170264668 170264747 -57259831 - MADE1 DNA Mariner 0 80 1 18978 143 31 15 chr3 170264747 170267837 -57256741 - L1MA3 LINE L1 -2240 5484 2200 1955 159 0 7 chr3 170267837 170268127 -57256451 + AluSx SINE Alu 1 288 -24 18978 143 31 15 chr3 170268127 170269897 -57254681 - L1MA3 LINE L1 -5524 2200 461 310 218 13 0 chr3 170269904 170269982 -57254596 - L1MC4 LINE L1 -669 7373 7295 3007 122 5 0 chr3 170271396 170271822 -57252756 + MSTA LTR MaLR 1 428 0 2672 100 71 0 chr3 170271836 170272246 -57252332 - MER4C LTR ERV1 -26 439 1 961 229 284 37 chr3 170272763 170273541 -57251037 - HAL1 LINE L1 -630 1877 908 7896 165 49 28 chr3 170273560 170274301 -57250277 + L1PA16 LINE L1 3164 3888 -2278 317 0 0 0 chr3 170274301 170274373 -57250205 + AluY SINE Alu 246 317 0 7896 165 49 28 chr3 170274373 170276526 -57248052 + L1PA16 LINE L1 3888 6162 -4 759 286 62 69 chr3 170276545 170276731 -57247847 - HAL1 LINE L1 -1611 896 710 2061 191 23 61 chr3 170276731 170277254 -57247324 - MLT1D LTR MaLR -2 503 1 759 286 62 69 chr3 170277254 170277515 -57247063 - HAL1 LINE L1 -1797 710 452 916 293 17 13 chr3 170277577 170277877 -57246701 - HAL1 LINE L1 -2167 340 40 207 0 0 0 chr3 170277877 170277900 -57246678 + (TG)n Simple_repeat Simple_repeat 2 24 0 921 179 109 5 chr3 170278573 170278774 -57245804 - MIR SINE MIR -36 226 5 631 272 98 38 chr3 170278893 170279150 -57245428 + L1M4 LINE L1 2574 2814 -3332 2166 99 0 7 chr3 170279150 170279472 -57245106 - AluSg SINE Alu 0 320 1 631 272 98 38 chr3 170279472 170279772 -57244806 + L1M4 LINE L1 2814 3166 -2980 326 198 107 79 chr3 170279946 170280096 -57244482 - L1ME4a LINE L1 -2 6119 5962 332 219 240 10 chr3 170280096 170280192 -57244386 - 5S rRNA rRNA -2 119 2 326 198 107 79 chr3 170280192 170280218 -57244360 - L1ME4a LINE L1 -159 5962 5938 21 0 0 0 chr3 170282150 170282171 -57242407 + AT_rich Low_complexity Low_complexity 1 21 0 303 278 148 19 chr3 170282200 170282416 -57242162 - L1ME4a LINE L1 -19 6102 5859 31 0 0 0 chr3 170282467 170282498 -57242080 + AT_rich Low_complexity Low_complexity 1 31 0 499 316 10 5 chr3 170282515 170282721 -57241857 - L1ME4a LINE L1 -335 5786 5580 186 309 62 12 chr3 170283538 170283619 -57240959 - L2 LINE L2 -712 2602 2518 251 287 11 11 chr3 170284092 170284179 -57240399 + CT-rich Low_complexity Low_complexity 4 90 0 307 257 155 59 chr3 170284241 170284333 -57240245 + MIR SINE MIR 13 95 -167 2342 48 24 7 chr3 170284333 170284625 -57239953 - AluY SINE Alu -14 297 1 307 257 155 59 chr3 170284625 170284719 -57239859 + MIR SINE MIR 95 217 -45 2608 55 27 2 chr3 170284903 170285308 -57239270 + MER11A LTR ERVK 1 511 -755 350 256 15 66 chr3 170287260 170287397 -57237181 - L1MC4 LINE L1 -11 8031 7902 334 269 74 0 chr3 170287443 170287551 -57237027 - L1MC4 LINE L1 -124 7918 7803 1314 284 94 21 chr3 170287578 170288353 -57236225 - L1MC4 LINE L1 -371 7671 6840 215 31 31 0 chr3 170288365 170288397 -57236181 + (TTG)n Simple_repeat Simple_repeat 1 33 0 1997 113 4 0 chr3 170288403 170288677 -57235901 - AluSx SINE Alu -37 275 1 25 0 0 0 chr3 170289427 170289452 -57235126 + AT_rich Low_complexity Low_complexity 1 25 0 1536 184 65 12 chr3 170289559 170289895 -57234683 - MLT1A1 LTR MaLR -11 354 1 579 281 108 17 chr3 170290000 170290231 -57234347 + MER102a DNA MER1_type 78 329 -1 369 0 0 0 chr3 170290583 170290624 -57233954 + (CA)n Simple_repeat Simple_repeat 1 41 0 785 228 18 12 chr3 170290727 170290894 -57233684 + MER5B DNA MER1_type 11 178 0 245 333 25 0 chr3 170290943 170291024 -57233554 + MIR SINE MIR 98 180 -82 573 244 159 4 chr3 170291179 170291467 -57233111 + L1ME2 LINE L1 5814 6155 -9 324 267 339 6 chr3 170291926 170292106 -57232472 + MIR SINE MIR 23 262 0 540 283 114 17 chr3 170293252 170293549 -57231029 - L1ME4a LINE L1 -236 5885 5560 24 32 0 0 chr3 170293619 170293650 -57230928 + AT_rich Low_complexity Low_complexity 1 31 0 524 302 117 22 chr3 170294014 170294236 -57230342 - MIR SINE MIR 0 262 20 204 179 0 0 chr3 170294888 170294927 -57229651 + T-rich Low_complexity Low_complexity 1 39 0 195 184 0 0 chr3 170295705 170295743 -57228835 + T-rich Low_complexity Low_complexity 1 38 0 2071 120 4 0 chr3 170296391 170296714 -57227864 + AluSx SINE Alu 6 329 0 235 255 0 0 chr3 170296908 170296955 -57227623 - L2 LINE L2 -16 3256 3210 * 5886 239 66 32 chr3 170296931 170297114 -57227464 - L2 LINE L2 -589 2725 2550 2139 35 0 0 chr3 170297114 170297371 -57227207 + L1PA2 LINE L1 5899 6155 0 5886 239 66 32 chr3 170297371 170299048 -57225530 - L2 LINE L2 -764 2550 802 1020 195 69 55 chr3 170299051 170299501 -57225077 + MLT1B LTR MaLR 1 467 0 528 248 69 40 chr3 170299504 170299706 -57224872 - L2 LINE L2 -2513 801 594 4593 45 4 0 chr3 170299708 170300266 -57224312 + L1PA5 LINE L1 5595 6154 0 300 236 27 108 chr3 170300835 170300983 -57223595 - MIR SINE MIR -6 256 121 2915 134 25 14 chr3 170301033 170301518 -57223060 - L1PA16 LINE L1 -9 6157 5668 192 77 0 0 chr3 170502618 170502644 -57021934 + (GAAAA)n Simple_repeat Simple_repeat 4 29 0 181 306 141 24 chr3 170502810 170502895 -57021683 + MIR3 SINE MIR 12 106 -102 270 0 0 0 chr3 170503152 170503182 -57021396 + (TTTAA)n Simple_repeat Simple_repeat 3 32 0 855 141 0 30 chr3 170503458 170503593 -57020985 - FLAM_C SINE Alu -2 131 1 1211 188 19 5 chr3 170503630 170503837 -57020741 + MSTB LTR MaLR 217 426 0 9713 170 12 14 chr3 170503837 170504185 -57020393 + MSTB-int LTR MaLR 1 348 -1303 2377 99 3 0 chr3 170504185 170504488 -57020090 + AluSp SINE Alu 1 304 -9 9713 170 12 14 chr3 170504488 170505261 -57019317 + MSTB-int LTR MaLR 348 1121 -530 2519 109 41 16 chr3 170505261 170505627 -57018951 - THE1C LTR MaLR 0 375 1 9713 170 12 14 chr3 170505627 170506158 -57018420 + MSTB-int LTR MaLR 1121 1651 0 626 116 0 0 chr3 170506161 170506256 -57018322 + MSTB LTR MaLR 4 98 -328 838 78 0 0 chr3 170506256 170506371 -57018207 - L1 LINE L1 -1576 4570 4456 2114 144 19 3 chr3 170506373 170506693 -57017885 + MSTB LTR MaLR 102 426 0 278 320 19 29 chr3 170506719 170506822 -57017756 - L2 LINE L2 -195 3077 2976 323 263 35 44 chr3 170507315 170507429 -57017149 + MIR SINE MIR 137 249 -13 220 325 41 16 chr3 170507437 170507560 -57017018 - L2 LINE L2 -836 2478 2353 2634 52 0 3 chr3 170507642 170507947 -57016631 - AluY SINE Alu -7 304 1 28 0 0 0 chr3 170507959 170507987 -57016591 + AT_rich Low_complexity Low_complexity 1 28 0 2267 120 0 0 chr3 170507987 170508295 -57016283 - AluSx SINE Alu 0 312 5 15239 155 58 37 chr3 170508316 170509342 -57015236 - L1MA3 LINE L1 0 7724 6722 2303 80 0 43 chr3 170509342 170509666 -57014912 - AluSg SINE Alu 0 310 1 15239 155 58 37 chr3 170509666 170510843 -57013735 - L1MA3 LINE L1 -1002 6722 5572 2101 117 0 3 chr3 170510843 170511160 -57013418 + AluSq SINE Alu 1 316 0 15239 155 58 37 chr3 170511160 170511735 -57012843 - L1MA3 LINE L1 -2152 5572 5011 2607 39 0 19 chr3 170511735 170512043 -57012535 - AluY SINE Alu -9 302 1 15239 155 58 37 chr3 170512043 170514368 -57010210 - L1MA3 LINE L1 -2713 5011 2421 2084 141 3 0 chr3 170514368 170514673 -57009905 - AluJb SINE Alu -1 311 6 15239 155 58 37 chr3 170514673 170516136 -57008442 - L1MA3 LINE L1 -5303 2421 991 514 155 155 35 chr3 170516139 170516255 -57008323 + MIR SINE MIR 77 206 -56 1271 266 34 71 chr3 170517050 170517243 -57007335 + MLT1L LTR MaLR 103 302 -313 691 198 19 43 chr3 170517243 170517405 -57007173 - FAM SINE Alu -17 158 1 1271 266 34 71 chr3 170517405 170517744 -57006834 + MLT1L LTR MaLR 302 615 0 22 35 0 0 chr3 170518777 170518806 -57005772 + AT_rich Low_complexity Low_complexity 1 29 0 1942 164 0 0 chr3 170518914 170519219 -57005359 + AluJb SINE Alu 1 305 -7 829 138 9 0 chr3 170519458 170519574 -57005004 + FLAM_C SINE Alu 2 118 -15 29 47 0 0 chr3 170519582 170519625 -57004953 + AT_rich Low_complexity Low_complexity 1 43 0 324 252 10 61 chr3 170519697 170519814 -57004764 - L1ME LINE L1 -377 5787 5677 2259 130 0 0 chr3 170520059 170520366 -57004212 - AluSx SINE Alu -5 307 1 724 248 6 6 chr3 170520508 170520665 -57003913 + MIR SINE MIR 72 228 -34 3257 116 81 0 chr3 170521720 170522204 -57002374 - L1MB1 LINE L1 -1 6167 5645 2299 145 21 3 chr3 170522213 170522599 -57001979 + L1MB1 LINE L1 5270 5662 -506 269 229 84 117 chr3 170522698 170522912 -57001666 + L1MC/D LINE L1 5614 5820 -1988 1587 155 0 30 chr3 170522925 170523189 -57001389 - AluJo SINE Alu -19 293 38 2231 114 0 0 chr3 170523192 170523516 -57001062 - AluSx SINE Alu 0 324 1 2077 103 53 0 chr3 170523613 170523895 -57000683 + AluSx SINE Alu 2 298 -14 260 293 138 28 chr3 170524284 170524465 -57000113 - L2 LINE L2 -661 2653 2453 186 220 17 51 chr3 170524837 170524896 -56999682 - MIR SINE MIR -3 259 203 2377 88 0 0 chr3 170524899 170525196 -56999382 + AluSg SINE Alu 1 297 -13 2070 141 0 7 chr3 170525206 170525503 -56999075 + AluSx SINE Alu 1 295 -17 706 242 86 73 chr3 170525551 170526004 -56998574 - MLT1H LTR MaLR -27 522 22 213 313 0 0 chr3 170526030 170526094 -56998484 - MIR SINE MIR -111 151 88 434 269 2 0 chr3 170526171 170526279 -56998299 - MIR SINE MIR -61 147 67 1062 95 0 0 chr3 170526872 170527009 -56997569 + AluSg/x SINE Alu 162 298 -14 1938 136 18 0 chr3 170527223 170527339 -56997239 + AluSx SINE Alu 7 119 -193 202 27 0 54 chr3 170527339 170527376 -56997202 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1938 136 18 0 chr3 170527376 170527538 -56997040 + AluSx SINE Alu 119 290 -22 380 281 49 59 chr3 170528760 170528873 -56995705 - L1ME LINE L1 -310 5811 5699 2221 115 0 3 chr3 170528873 170529168 -56995410 - AluSq SINE Alu -19 294 1 380 281 49 59 chr3 170529168 170529257 -56995321 - L1ME LINE L1 -422 5699 5611 1758 163 7 3 chr3 170529354 170529533 -56995045 - AluJb SINE Alu -26 286 104 222 0 0 73 chr3 170529533 170529574 -56995004 + (GTTTG)n Simple_repeat Simple_repeat 2 39 0 1758 163 7 3 chr3 170529574 170529677 -56994901 - AluJb SINE Alu -208 104 3 686 125 17 0 chr3 170529688 170529808 -56994770 + CT-rich Low_complexity Low_complexity 4 125 0 239 264 0 0 chr3 170532048 170532101 -56992477 + MIR SINE MIR 2 54 -208 1837 168 0 7 chr3 170532607 170532898 -56991680 - AluJo SINE Alu -12 300 12 188 234 247 13 chr3 170533711 170533788 -56990790 + MIR SINE MIR 26 120 -142 1994 141 0 3 chr3 170534424 170534730 -56989848 - AluSx SINE Alu 0 305 1 2378 91 3 0 chr3 170535506 170535803 -56988775 + AluSp SINE Alu 1 298 -15 332 316 75 32 chr3 170536455 170536642 -56987936 + MIR SINE MIR 65 259 -3 249 215 38 158 chr3 170536715 170536924 -56987654 - L1MC5 LINE L1 -44 7917 7734 2270 103 0 0 chr3 170537253 170537543 -56987035 - AluSq SINE Alu -19 294 5 1160 155 77 149 chr3 170537717 170538092 -56986486 - MER7A DNA MER2_type 0 346 1 1686 190 13 7 chr3 170538402 170538712 -56985866 + AluJo SINE Alu 1 312 0 185 220 254 34 chr3 170540184 170540302 -56984276 + MIR SINE MIR 47 190 -72 225 320 40 0 chr3 170540673 170540748 -56983830 + L2 LINE L2 3008 3085 -187 1147 212 37 5 chr3 170540755 170540972 -56983606 - MER58A DNA MER1_type 0 224 1 1620 171 13 37 chr3 170541086 170541385 -56983193 - AluJo SINE Alu -18 294 3 1389 209 55 3 chr3 170542547 170542839 -56981739 - MER58B DNA MER1_type 0 341 35 281 47 23 0 chr3 170542975 170543018 -56981560 + (TTTG)n Simple_repeat Simple_repeat 4 47 0 269 218 18 0 chr3 170543018 170543073 -56981505 - MER58B DNA MER1_type -242 99 44 360 301 29 22 chr3 170543092 170543228 -56981350 + MLT1J2 LTR MaLR 259 395 -55 1602 179 102 14 chr3 170543262 170543692 -56980886 + Charlie2 DNA MER1_type 2389 2856 -6 235 328 33 49 chr3 170544344 170544466 -56980112 + MIR3 SINE MIR 9 128 -80 1377 54 0 0 chr3 170544466 170544634 -56979944 - AluY SINE Alu 0 311 144 603 277 137 24 chr3 170544988 170545324 -56979254 + LTR16B LTR ERVL 91 464 0 226 253 0 24 chr3 170545903 170545986 -56978592 + (TATATG)n Simple_repeat Simple_repeat 6 86 0 2027 111 3 3 chr3 170546514 170546802 -56977776 - AluSx SINE Alu -12 300 13 2384 73 0 26 chr3 170547563 170547876 -56976702 - AluY SINE Alu -6 305 1 316 320 38 52 chr3 170548331 170548530 -56976048 + MIR SINE MIR 18 207 -55 26 30 0 0 chr3 170548545 170548578 -56976000 + AT_rich Low_complexity Low_complexity 1 33 0 291 253 55 84 chr3 170549393 170549616 -56974962 - L1ME4a LINE L1 -169 5952 5737 2291 107 0 3 chr3 170549616 170549926 -56974652 + AluSc SINE Alu 1 309 0 291 253 55 84 chr3 170549926 170549975 -56974603 - L1ME4a LINE L1 -384 5737 5688 2346 77 7 7 chr3 170550252 170550551 -56974027 + AluSp SINE Alu 1 299 -14 209 179 0 0 chr3 170550563 170550602 -56973976 + (CAT)n Simple_repeat Simple_repeat 1 39 0 226 227 68 0 chr3 170550710 170550754 -56973824 - L2 LINE L2 -33 3239 3193 1371 93 0 0 chr3 170551436 170551608 -56972970 - AluSg/x SINE Alu -21 291 120 2239 116 0 0 chr3 170551807 170552110 -56972468 + AluSx SINE Alu 1 303 -9 2598 194 54 47 chr3 170552640 170553098 -56971480 + L1MC4 LINE L1 7348 7801 -194 2332 112 0 0 chr3 170553098 170553410 -56971168 + AluSx SINE Alu 1 312 0 2598 194 54 47 chr3 170553410 170553516 -56971062 + L1MC4 LINE L1 7801 7859 -136 255 61 0 0 chr3 170553516 170553549 -56971029 + (TAGA)n Simple_repeat Simple_repeat 1 33 0 2598 194 54 47 chr3 170553549 170553687 -56970891 + L1MC4 LINE L1 7859 7995 0 368 223 59 105 chr3 170555129 170555367 -56969211 + L1ME4a LINE L1 5599 5825 -296 1052 307 62 22 chr3 170555368 170555869 -56968709 + L1MC4a LINE L1 5365 5885 -1923 232 186 115 62 chr3 170556069 170556100 -56968478 + L1ME LINE L1 5811 5839 -282 2376 84 3 0 chr3 170556100 170556396 -56968182 + AluSx SINE Alu 1 297 -15 232 186 115 62 chr3 170556396 170556477 -56968101 + L1ME LINE L1 5839 5929 -192 426 20 0 0 chr3 170556683 170556734 -56967844 + (CA)n Simple_repeat Simple_repeat 2 52 0 222 37 0 0 chr3 170557270 170557297 -56967281 + (TTAA)n Simple_repeat Simple_repeat 3 29 0 1996 124 0 7 chr3 170557821 170558140 -56966438 - AluSx SINE Alu 0 312 1 215 327 19 48 chr3 170558159 170558263 -56966315 + MER5A DNA MER1_type 16 116 -73 200 229 57 71 chr3 170558330 170558400 -56966178 - MER5A DNA MER1_type -120 69 1 212 264 96 88 chr3 170558704 170558829 -56965749 - L2 LINE L2 -4 3309 3184 1682 164 3 17 chr3 170558987 170559296 -56965282 + AluSx SINE Alu 1 305 0 248 333 31 0 chr3 170559765 170559861 -56964717 + MIR SINE MIR 23 121 -141 21 0 0 0 chr3 170559866 170559887 -56964691 + AT_rich Low_complexity Low_complexity 1 21 0 634 173 0 39 chr3 170559893 170560020 -56964558 + L1PB3 LINE L1 6033 6154 0 23 54 0 0 chr3 170560020 170560057 -56964521 + AT_rich Low_complexity Low_complexity 1 37 0 302 323 65 0 chr3 170561153 170561246 -56963332 + MIR SINE MIR 46 144 -64 232 242 0 61 chr3 170561447 170561513 -56963065 - L2 LINE L2 -10 3303 3242 223 273 0 0 chr3 170561536 170561580 -56962998 + L2 LINE L2 3144 3187 -85 309 26 0 0 chr3 170561647 170561685 -56962893 + (CA)n Simple_repeat Simple_repeat 2 39 0 257 344 16 24 chr3 170561712 170561837 -56962741 - MER5A DNA MER1_type -5 184 61 2177 109 0 28 chr3 170561857 170562178 -56962400 - AluSx SINE Alu 0 312 1 1551 153 47 4 chr3 170563104 170563359 -56961219 + AluJb SINE Alu 1 266 -46 2219 117 0 0 chr3 170563391 170563681 -56960897 + AluSx SINE Alu 1 290 -22 226 26 79 0 chr3 170564541 170564579 -56959999 + A-rich Low_complexity Low_complexity 3 43 0 1946 180 80 22 chr3 170564714 170564756 -56959822 - MLT2F LTR ERVL 0 663 625 315 0 0 0 chr3 170564756 170564791 -56959787 + (CA)n Simple_repeat Simple_repeat 2 36 0 1946 180 80 22 chr3 170564791 170565324 -56959254 - MLT2F LTR ERVL -38 625 10 2193 115 10 0 chr3 170565533 170565837 -56958741 + AluSq SINE Alu 3 309 -4 1621 172 0 18 chr3 170566820 170567093 -56957485 - AluJo SINE Alu -33 279 12 2464 84 0 3 chr3 170567308 170567638 -56956940 + AluY SINE Alu 1 329 0 2142 130 0 0 chr3 170568017 170568317 -56956261 - AluSx SINE Alu -12 300 1 21 0 0 0 chr3 170568370 170568391 -56956187 + AT_rich Low_complexity Low_complexity 1 21 0 2113 98 11 0 chr3 170569735 170570012 -56954566 + AluSp SINE Alu 1 280 -33 207 0 0 0 chr3 170570012 170570035 -56954543 + (CA)n Simple_repeat Simple_repeat 1 23 0 2518 46 0 7 chr3 170570090 170570393 -56954185 + AluY SINE Alu 1 301 -10 396 274 280 0 chr3 170571368 170571854 -56952724 + L2 LINE L2 1919 2540 -774 1556 134 0 0 chr3 170572447 170572670 -56951908 - AluSx SINE Alu -8 304 82 2559 65 0 0 chr3 170572670 170572977 -56951601 - AluY SINE Alu -3 308 1 637 130 0 33 chr3 170572977 170573069 -56951509 - AluSx SINE Alu -219 93 5 21 0 0 0 chr3 170573391 170573412 -56951166 + AT_rich Low_complexity Low_complexity 1 21 0 302 270 9 18 chr3 170573727 170573838 -56950740 + (TAGA)n Simple_repeat Simple_repeat 4 113 0 482 239 110 74 chr3 170573841 170574150 -56950428 - MER5C DNA MER1_type -3 321 2 21 0 0 0 chr3 170574477 170574498 -56950080 + AT_rich Low_complexity Low_complexity 1 21 0 592 193 80 43 chr3 170574504 170574691 -56949887 + L1MC4a LINE L1 5731 5924 -1884 222 160 40 40 chr3 170575904 170575954 -56948624 - MIR SINE MIR 0 262 213 * 642 265 30 113 chr3 170575924 170576260 -56948318 - L2 LINE L2 -26 3246 2939 669 94 0 0 chr3 170576386 170576471 -56948107 - AluY SINE Alu -224 86 2 1817 166 17 0 chr3 170576568 170576857 -56947721 + AluSx SINE Alu 6 299 -13 1005 153 21 26 chr3 170578093 170578283 -56946295 + MER53 DNA DNA 1 189 0 241 223 64 43 chr3 170578313 170578407 -56946171 + MLT1K LTR MaLR 26 121 -467 2226 94 3 3 chr3 170578845 170579144 -56945434 + AluSp SINE Alu 1 299 -14 2250 75 4 0 chr3 170579144 170579447 -56945131 + AluY SINE Alu 1 305 0 1301 157 45 73 chr3 170579783 170580123 -56944455 - AluJo SINE Alu 0 336 5 1782 163 3 0 chr3 170580918 170581200 -56943378 - AluJo SINE Alu -29 283 1 1586 165 39 11 chr3 170582973 170583252 -56941326 - AluJb SINE Alu -10 302 16 40 37 0 0 chr3 170583257 170583311 -56941267 + AT_rich Low_complexity Low_complexity 1 54 0 204 274 226 29 chr3 170583399 170583501 -56941077 - MIR SINE MIR -116 146 25 2149 102 10 0 chr3 170584015 170584308 -56940270 + AluSq SINE Alu 1 296 -17 394 278 122 34 chr3 170584491 170584657 -56939921 + MIR SINE MIR 8 185 -68 2262 73 42 3 chr3 170585226 170585515 -56939063 + AluY SINE Alu 1 300 -11 1043 263 140 25 chr3 170585725 170586125 -56938453 - MLT1L LTR MaLR -133 482 37 197 261 45 102 chr3 170586158 170586246 -56938332 + L2 LINE L2 2569 2651 -663 2175 120 0 0 chr3 170586630 170586922 -56937656 - AluSg SINE Alu -16 294 3 351 113 0 0 chr3 170586949 170587011 -56937567 + (GA)n Simple_repeat Simple_repeat 1 62 0 1573 179 3 31 chr3 170587011 170587301 -56937277 - AluJo SINE Alu -30 282 1 231 244 73 114 chr3 170587318 170587441 -56937137 + Charlie2a DNA MER1_type 202 319 -2543 554 206 176 44 chr3 170587459 170587663 -56936915 + Charlie2a DNA MER1_type 539 769 -2093 657 255 20 5 chr3 170587788 170587988 -56936590 + Charlie2a DNA MER1_type 770 972 -1890 918 142 0 35 chr3 170587996 170588137 -56936441 - AluJo SINE Alu -176 136 1 566 152 64 8 chr3 170588137 170588262 -56936316 + Charlie2a DNA MER1_type 958 1089 -1773 1049 181 5 11 chr3 170588268 170588456 -56936122 + AluJo SINE Alu 121 307 -5 26 74 0 0 chr3 170588480 170588534 -56936044 + AT_rich Low_complexity Low_complexity 1 54 0 514 200 132 26 chr3 170588563 170588740 -56935838 + Charlie2a DNA MER1_type 2202 2398 -464 539 305 35 10 chr3 170588740 170588943 -56935635 + MLT1J2 LTR MaLR 3 210 -240 279 185 62 15 chr3 170588979 170589044 -56935534 - MER58 DNA MER1_type -1 2419 2352 1795 196 14 50 chr3 170589167 170589591 -56934987 + L1MB8 LINE L1 5770 6178 0 1715 174 7 3 chr3 170589598 170589891 -56934687 + AluJo SINE Alu 1 294 -18 647 250 145 0 chr3 170590665 170590865 -56933713 + MIR SINE MIR 29 257 -5 707 156 36 6 chr3 170591984 170592151 -56932427 + GA-rich Low_complexity Low_complexity 3 174 0 258 224 0 90 chr3 170593086 170593153 -56931425 + L2 LINE L2 3242 3302 -11 217 292 0 31 chr3 170593226 170593291 -56931287 - L2 LINE L2 -5 3267 3205 1221 112 28 0 chr3 170593304 170593482 -56931096 + AluSg/x SINE Alu 127 309 -1 2265 98 0 7 chr3 170593722 170594019 -56930559 - AluSx SINE Alu -17 295 1 182 277 145 24 chr3 170594094 170594177 -56930401 - MIR SINE MIR -4 258 166 2292 73 22 54 chr3 170595389 170595705 -56928873 + AluSp SINE Alu 1 306 -7 859 115 0 25 chr3 170595804 170595926 -56928652 + AluJb SINE Alu 5 123 -189 490 211 164 0 chr3 170597440 170597614 -56926964 - MIR SINE MIR -24 238 30 590 99 0 0 chr3 170597936 170598017 -56926561 - AluY SINE Alu -228 82 2 974 226 139 28 chr3 170598670 170598770 -56925808 + MER69 DNA AcHobo 7 95 -2431 2231 81 10 29 chr3 170598770 170599078 -56925500 - AluSq SINE Alu -11 302 1 974 226 139 28 chr3 170599078 170599265 -56925313 + MER69 DNA AcHobo 95 326 -2200 201 238 63 0 chr3 170599265 170599328 -56925250 + MIR SINE MIR 125 191 -71 375 209 82 89 chr3 170599919 170600025 -56924553 + MIR SINE MIR 57 163 -99 522 266 47 0 chr3 170600025 170600153 -56924425 + MER94 DNA DNA 1 134 0 375 209 82 89 chr3 170600153 170600204 -56924374 + MIR SINE MIR 163 213 -49 1774 92 9 0 chr3 170600209 170600438 -56924140 + AluSq SINE Alu 1 231 -82 268 291 164 15 chr3 170600633 170600767 -56923811 + MIR3 SINE MIR 42 195 -13 1676 155 0 57 chr3 170600785 170601081 -56923497 - AluJb SINE Alu -22 290 12 2252 107 0 10 chr3 170601173 170601473 -56923105 + AluSx SINE Alu 1 297 -15 194 200 80 0 chr3 170601476 170601526 -56923052 - L2 LINE L2 -15 3298 3245 183 184 0 0 chr3 170601532 170601570 -56923008 + (TG)n Simple_repeat Simple_repeat 1 38 0 26 50 0 0 chr3 170601698 170601738 -56922840 + AT_rich Low_complexity Low_complexity 1 40 0 387 227 182 27 chr3 170601798 170601908 -56922670 - L2 LINE L2 0 3313 3187 2295 101 0 0 chr3 170602248 170602544 -56922034 + AluY SINE Alu 1 296 -15 347 362 119 23 chr3 170602891 170603236 -56921342 + L2 LINE L2 2841 3218 -54 1856 188 61 12 chr3 170603611 170603957 -56920621 - MLT1A1 LTR MaLR -2 363 1 699 328 112 38 chr3 170604165 170604920 -56919658 + L2 LINE L2 2214 3077 -195 342 287 113 0 chr3 170605611 170605726 -56918852 + MIR SINE MIR 66 193 -69 180 0 0 0 chr3 170605987 170606007 -56918571 + (T)n Simple_repeat Simple_repeat 1 20 0 252 0 0 0 chr3 170606848 170606876 -56917702 + (TTTA)n Simple_repeat Simple_repeat 4 31 0 2181 98 18 0 chr3 170606902 170607187 -56917391 + AluSx SINE Alu 1 290 -22 38 22 0 0 chr3 170608116 170608161 -56916417 + AT_rich Low_complexity Low_complexity 1 45 0 1930 153 0 22 chr3 170608364 170608678 -56915900 + AluSx SINE Alu 1 307 -5 743 255 84 30 chr3 170608868 170609131 -56915447 - MLT1F LTR MaLR -171 371 95 229 162 206 29 chr3 170609467 170609535 -56915043 - MIR SINE MIR -5 257 178 1246 225 55 21 chr3 170609659 170609988 -56914590 + MER2 DNA MER2_type 1 340 -5 484 310 46 6 chr3 170610976 170611150 -56913428 + L1ME LINE L1 5602 5782 -339 319 190 1 0 chr3 170611242 170611326 -56913252 + Alu SINE Alu 2 47 -253 670 231 65 17 chr3 170611364 170611552 -56913026 + MIR SINE MIR 21 212 -50 920 148 93 164 chr3 170612217 170612527 -56912051 - AluJb SINE Alu -4 308 21 240 352 23 0 chr3 170612642 170612730 -56911848 + MIR SINE MIR 93 182 -80 339 252 48 29 chr3 170612737 170612840 -56911738 - MIR SINE MIR -1 261 157 413 261 56 3 chr3 170612857 170613050 -56911528 - MIR SINE MIR 0 262 5 405 263 21 0 chr3 170613048 170613143 -56911435 - MIR SINE MIR -114 148 52 * 2190 108 3 13 chr3 170613796 170614111 -56910467 - AluSx SINE Alu 0 312 1 231 295 150 6 chr3 170614286 170614459 -56910119 - L1MC4 LINE L1 -60 7982 7785 2121 104 3 7 chr3 170614602 170614901 -56909677 + AluSc SINE Alu 1 298 -11 22 35 0 0 chr3 170615688 170615717 -56908861 + GC_rich Low_complexity Low_complexity 1 29 0 213 39 0 0 chr3 170616064 170616090 -56908488 + (GGA)n Simple_repeat Simple_repeat 1 26 0 225 65 0 0 chr3 170617410 170617441 -56907137 + (TG)n Simple_repeat Simple_repeat 1 31 0 * 321 26 0 0 chr3 170617440 170617478 -56907100 + (GA)n Simple_repeat Simple_repeat 1 38 0 783 233 125 59 chr3 170618671 170618836 -56905742 - L1MC4 LINE L1 -192 7850 7697 290 45 23 0 chr3 170618836 170618880 -56905698 + (TG)n Simple_repeat Simple_repeat 2 46 0 783 233 125 59 chr3 170618880 170619122 -56905456 - L1MC4 LINE L1 -345 7697 7416 21 36 0 0 chr3 170619129 170619157 -56905421 + AT_rich Low_complexity Low_complexity 1 28 0 513 250 135 10 chr3 170619469 170619661 -56904917 - L1ME3A LINE L1 -15 6155 5940 225 196 0 0 chr3 170620955 170621006 -56903572 + (TA)n Simple_repeat Simple_repeat 1 51 0 2257 84 14 0 chr3 170622934 170623221 -56901357 - AluSq SINE Alu -22 291 1 284 257 0 28 chr3 170623316 170623425 -56901153 + (TTA)n Simple_repeat Simple_repeat 1 106 0 213 288 55 41 chr3 170623440 170623513 -56901065 - L2 LINE L2 -4 3268 3195 218 114 0 23 chr3 170623770 170623814 -56900764 + (TTCA)n Simple_repeat Simple_repeat 2 44 0 253 242 0 0 chr3 170625033 170625095 -56899483 - L1ME3A LINE L1 -299 5822 5761 738 236 118 45 chr3 170625214 170625502 -56899076 - MLT1J LTR MaLR -74 437 129 343 270 101 50 chr3 170625540 170625699 -56898879 - L1ME3A LINE L1 -439 5682 5516 3692 172 69 41 chr3 170626288 170627027 -56897551 - MER21B LTR ERV1 -85 778 19 228 238 76 67 chr3 170627025 170627130 -56897448 - MER21B LTR ERV1 -757 106 1 * 259 170 0 0 chr3 170627360 170627407 -56897171 + L1MC4 LINE L1 7996 8042 0 2010 115 28 14 chr3 170628155 170628434 -56896144 + AluSq SINE Alu 1 286 -27 306 0 0 0 chr3 170628434 170628468 -56896110 + (CA)n Simple_repeat Simple_repeat 2 35 0 493 320 66 10 chr3 170628647 170628844 -56895734 - MIR SINE MIR -6 256 49 526 186 21 0 chr3 170630089 170630186 -56894392 + FLAM_A SINE Alu 1 99 -43 2118 134 0 0 chr3 170630324 170630615 -56893963 + AluSx SINE Alu 1 291 -21 1809 172 3 16 chr3 170630830 170631144 -56893434 - AluJb SINE Alu 0 312 3 2122 125 7 0 chr3 170632679 170632983 -56891595 + AluSq SINE Alu 2 307 -6 868 169 0 0 chr3 170633929 170634059 -56890519 - FLAM_C SINE Alu -2 131 2 1864 89 86 11 chr3 170634688 170634968 -56889610 - AluSp SINE Alu -12 301 1 219 150 25 0 chr3 170635562 170635602 -56888976 + GA-rich Low_complexity Low_complexity 4 44 0 2101 71 4 0 chr3 170636406 170636683 -56887895 - AluSp SINE Alu 0 309 32 2121 102 3 14 chr3 170638482 170638777 -56885801 - AluSx SINE Alu -20 292 1 1757 169 0 29 chr3 170639250 170639558 -56885020 + AluJo SINE Alu 1 299 -13 812 173 0 0 chr3 170640761 170640888 -56883690 - FLAM_C SINE Alu -14 129 3 233 337 209 6 chr3 170641307 170641479 -56883099 - MIR SINE MIR -24 238 32 180 152 0 30 chr3 170641960 170641993 -56882585 + L2 LINE L2 3015 3046 -226 291 54 0 0 chr3 170642353 170642390 -56882188 + (A)n Simple_repeat Simple_repeat 1 37 0 580 255 109 21 chr3 170642485 170642724 -56881854 - L1MC4a LINE L1 -1882 5926 5667 1840 156 3 0 chr3 170642968 170643304 -56881274 - AluSx SINE Alu 0 338 2 21 57 0 0 chr3 170643574 170643609 -56880969 + AT_rich Low_complexity Low_complexity 1 35 0 753 174 0 36 chr3 170643616 170643754 -56880824 + FLAM_A SINE Alu 1 133 0 682 230 148 9 chr3 170644048 170644265 -56880313 + MIR SINE MIR 16 262 0 25 0 0 0 chr3 170644276 170644301 -56880277 + AT_rich Low_complexity Low_complexity 1 25 0 2497 56 0 0 chr3 170644527 170644830 -56879748 + AluY SINE Alu 2 304 -7 315 0 0 0 chr3 170645032 170645067 -56879511 + (T)n Simple_repeat Simple_repeat 1 35 0 660 95 11 11 chr3 170645254 170645349 -56879229 - AluSq SINE Alu -79 234 140 2420 94 0 3 chr3 170645742 170646051 -56878527 + AluSx SINE Alu 1 308 -4 2224 92 0 0 chr3 170646513 170646815 -56877763 - AluSg SINE Alu 0 302 1 461 281 274 27 chr3 170647024 170647352 -56877226 + L2 LINE L2 2856 3264 -49 203 318 98 38 chr3 170649907 170650039 -56874539 + MIR3 SINE MIR 41 180 -28 611 187 37 0 chr3 170651401 170651508 -56873070 - MER81 DNA DNA -2 112 2 2141 96 10 3 chr3 170651808 170652100 -56872478 - AluSp SINE Alu -19 294 1 21 57 0 0 chr3 170652554 170652589 -56871989 + AT_rich Low_complexity Low_complexity 1 35 0 338 214 24 12 chr3 170652737 170652821 -56871757 - MER103 DNA DNA -80 86 2 3326 179 67 50 chr3 170653020 170653238 -56871340 - L1MC3 LINE L1 -21 7764 7551 237 53 26 0 chr3 170653238 170653276 -56871302 + (TTTTG)n Simple_repeat Simple_repeat 2 180 0 1882 164 0 3 chr3 170653276 170653562 -56871016 - AluJb SINE Alu -1 322 1 3326 179 67 50 chr3 170653562 170654107 -56870471 - L1MC3 LINE L1 -233 7552 6987 198 0 0 0 chr3 170655151 170655173 -56869405 + (TG)n Simple_repeat Simple_repeat 1 22 0 264 250 0 0 chr3 170655277 170655337 -56869241 + A-rich Low_complexity Low_complexity 1 60 0 2175 119 0 3 chr3 170655572 170655875 -56868703 - AluSq SINE Alu -11 302 1 332 290 165 28 chr3 170656144 170656320 -56868258 + MIR3 SINE MIR 4 203 -5 388 238 0 11 chr3 170656740 170656847 -56867731 - L1MC3 LINE L1 -398 5766 5662 2091 116 3 0 chr3 170657297 170657582 -56866996 + AluSx SINE Alu 1 286 -26 204 299 13 13 chr3 170658077 170658154 -56866424 - L2 LINE L2 -1 3271 3195 505 251 115 47 chr3 170658423 170658614 -56865964 + MIR3 SINE MIR 2 205 -3 180 286 224 31 chr3 170658649 170658747 -56865831 + L2 LINE L2 3182 3298 -15 21 57 0 0 chr3 170658912 170658947 -56865631 + AT_rich Low_complexity Low_complexity 1 35 0 843 147 0 0 chr3 170659051 170659167 -56865411 + FLAM_C SINE Alu 3 118 -25 37 62 0 0 chr3 170659169 170659234 -56865344 + AT_rich Low_complexity Low_complexity 1 65 0 24 53 0 0 chr3 170659461 170659499 -56865079 + AT_rich Low_complexity Low_complexity 1 38 0 2243 92 7 10 chr3 170659510 170659816 -56864762 - AluSc SINE Alu -4 305 1 201 74 0 0 chr3 170660205 170660232 -56864346 + (CA)n Simple_repeat Simple_repeat 2 28 0 1808 250 55 13 chr3 170661070 170661526 -56863052 - MLT1H1 LTR MaLR -11 544 70 405 0 0 0 chr3 170662992 170663037 -56861541 + (TG)n Simple_repeat Simple_repeat 2 46 0 202 216 20 0 chr3 170664140 170664191 -56860387 + (TTCA)n Simple_repeat Simple_repeat 1 52 0 2193 105 0 7 chr3 170664903 170665198 -56859380 + AluSx SINE Alu 7 299 -13 1085 208 42 35 chr3 170665235 170665523 -56859055 + L1ME1 LINE L1 5857 6146 -20 380 269 90 30 chr3 170665575 170665809 -56858769 - L1ME4a LINE L1 -27 6094 5847 192 77 0 0 chr3 170666335 170666361 -56858217 + (T)n Simple_repeat Simple_repeat 1 26 0 298 236 28 14 chr3 170666904 170666976 -56857602 - L2 LINE L2 -50 3263 3191 2162 130 3 3 chr3 170667078 170667386 -56857192 - AluSx SINE Alu -4 308 1 337 307 62 14 chr3 170668653 170668815 -56855763 - MIR3 SINE MIR -66 142 5 * 410 121 181 133 chr3 170668802 170668919 -56855659 + MIR SINE MIR 65 194 -68 1607 118 0 13 chr3 170668919 170669147 -56855431 - AluSc SINE Alu -2 307 83 410 121 181 133 chr3 170669147 170669195 -56855383 + MIR SINE MIR 194 238 -24 382 268 124 53 chr3 170669273 170669482 -56855096 - MIR SINE MIR -31 231 8 323 314 135 0 chr3 170669641 170669797 -56854781 - L3 LINE CR1 -278 1299 1123 667 239 137 24 chr3 170670866 170671071 -56853507 - MIR SINE MIR 0 262 35 691 271 199 23 chr3 170671233 170671778 -56852800 - L2 LINE L2 -17 3296 2664 2185 118 0 0 chr3 170671882 170672178 -56852400 + AluSx SINE Alu 1 296 -16 36 0 0 0 chr3 170672465 170672501 -56852077 + AT_rich Low_complexity Low_complexity 1 36 0 27 73 0 0 chr3 170672580 170672635 -56851943 + AT_rich Low_complexity Low_complexity 1 55 0 2179 107 7 3 chr3 170672751 170673049 -56851529 - AluY SINE Alu -12 299 1 1788 124 82 0 chr3 170674325 170674607 -56849971 - AluJb SINE Alu -7 305 1 2377 86 26 0 chr3 170675670 170675973 -56848605 + AluSp SINE Alu 1 311 -2 886 167 30 15 chr3 170675987 170676185 -56848393 + L1MD3 LINE L1 7794 7994 -1 231 238 75 12 chr3 170676403 170676483 -56848095 - L1MC4 LINE L1 -2 8040 7956 21 82 0 0 chr3 170676486 170676535 -56848043 + AT_rich Low_complexity Low_complexity 1 49 0 1053 99 82 22 chr3 170677190 170677372 -56847206 - L1PA16 LINE L1 0 6166 5974 607 156 115 0 chr3 170677390 170677486 -56847092 - U6 snRNA snRNA 0 107 1 393 275 99 0 chr3 170678919 170679050 -56845528 + MIR SINE MIR 40 183 -79 2326 104 3 0 chr3 170679569 170679868 -56844710 + AluSp SINE Alu 1 300 -13 2026 107 0 88 chr3 170680034 170680362 -56844216 - AluSx SINE Alu -13 299 1 267 245 75 9 chr3 170681227 170681325 -56843253 - MIR SINE MIR -63 145 46 2333 98 0 16 chr3 170683139 170683457 -56841121 - AluSq SINE Alu 0 313 1 186 118 0 0 chr3 170684645 170684679 -56839899 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 23 0 0 0 chr3 170684709 170684732 -56839846 + AT_rich Low_complexity Low_complexity 1 23 0 990 158 0 7 chr3 170686220 170686372 -56838206 + AluJo SINE Alu 2 152 -160 258 213 64 11 chr3 170686373 170686467 -56838111 + L1M LINE L1 5263 5361 -817 383 206 27 0 chr3 170686818 170686891 -56837687 + MER81 DNA DNA 1 75 -39 2236 91 10 10 chr3 170686898 170687207 -56837371 + AluSc SINE Alu 1 309 0 207 0 0 0 chr3 170687212 170687235 -56837343 + (CAA)n Simple_repeat Simple_repeat 2 24 0 853 172 13 0 chr3 170687289 170687440 -56837138 - MER45A DNA AcHobo 0 178 26 216 343 50 33 chr3 170687986 170688167 -56836411 - L2 LINE L2 -410 2904 2721 2173 111 0 16 chr3 170688900 170689215 -56835363 - AluSg SINE Alu 0 310 1 218 173 0 161 chr3 170689785 170689824 -56834754 + MIR SINE MIR 85 106 -156 2384 90 3 3 chr3 170689824 170690135 -56834443 - AluSp SINE Alu 0 313 3 218 173 0 161 chr3 170690135 170690176 -56834402 + MIR SINE MIR 106 152 -110 387 276 141 19 chr3 170690289 170690445 -56834133 + L2 LINE L2 3100 3274 -39 241 275 77 33 chr3 170690990 170691081 -56833497 + MER5A DNA MER1_type 86 180 -9 310 143 71 31 chr3 170691160 170691258 -56833320 - Charlie7 DNA MER1_type -82 2530 2429 324 261 0 0 chr3 170691868 170691933 -56832645 + MER5A DNA MER1_type 3 67 -122 654 189 16 0 chr3 170691936 170692058 -56832520 + FLAM_C SINE Alu 1 124 -19 2055 128 20 3 chr3 170692064 170692556 -56832022 + AluSq SINE Alu 1 497 0 793 130 11 38 chr3 170692372 170692605 -56831973 + GA-rich Low_complexity Low_complexity 2 229 0 369 179 191 0 chr3 170692617 170692701 -56831877 + MER5A DNA MER1_type 85 184 -5 389 244 13 109 chr3 170692712 170692868 -56831710 - MER5B DNA MER1_type -5 173 33 981 189 0 0 chr3 170692918 170693082 -56831496 - FRAM SINE Alu -12 164 1 398 331 78 6 chr3 170693105 170693271 -56831307 - MIR3 SINE MIR -7 201 24 414 278 31 19 chr3 170693548 170693710 -56830868 + MIR SINE MIR 2 165 -97 2176 95 0 7 chr3 170694086 170694394 -56830184 + AluSx SINE Alu 1 306 0 426 320 0 40 chr3 170694496 170694671 -56829907 + MIR SINE MIR 7 174 -88 1048 173 104 5 chr3 170694671 170695008 -56829570 - MER92A LTR ERV1 0 412 1 222 336 173 0 chr3 170695150 170695254 -56829324 - L2 LINE L2 -18 3254 3133 2395 95 0 0 chr3 170695689 170695993 -56828585 - AluSx SINE Alu -8 304 1 2349 50 0 11 chr3 170696001 170696314 -56828264 - AluY SINE Alu 0 310 1 926 127 0 42 chr3 170697456 170697598 -56826980 - AluJb SINE Alu -176 136 1 187 340 11 53 chr3 170697708 170697802 -56826776 - MIR SINE MIR -78 130 41 345 282 122 49 chr3 170698586 170698831 -56825747 - HAL1 LINE L1 -2 2505 2243 324 0 0 0 chr3 170698918 170698954 -56825624 + (T)n Simple_repeat Simple_repeat 1 36 0 2330 53 13 57 chr3 170699284 170699602 -56824976 - AluY SINE Alu -7 304 1 1929 155 16 7 chr3 170699801 170700110 -56824468 + AluJo SINE Alu 1 312 0 773 266 43 10 chr3 170700768 170700975 -56823603 + MIR SINE MIR 1 214 -48 631 240 171 5 chr3 170701707 170701924 -56822654 + HAL1 LINE L1 1639 1891 -616 1332 122 0 26 chr3 170753443 170753632 -56770946 - AluSg SINE Alu -126 184 1 315 0 0 0 chr3 170753652 170753687 -56770891 + (TG)n Simple_repeat Simple_repeat 1 35 0 316 293 66 33 chr3 170754422 170754634 -56769944 + MLT1K LTR MaLR 329 547 -41 651 203 131 0 chr3 170754763 170754916 -56769662 + MER5B DNA MER1_type 6 178 0 184 322 81 0 chr3 170755114 170755201 -56769377 - L2 LINE L2 -1 3312 3219 1471 316 180 33 chr3 170755380 170755480 -56769098 - L2 LINE L2 -376 2938 2854 1584 112 0 35 chr3 170755480 170755712 -56768866 + AluSg/x SINE Alu 89 312 0 1471 316 180 33 chr3 170755712 170757168 -56767410 - L2 LINE L2 -460 2854 1154 213 274 48 16 chr3 170757202 170757264 -56767314 - L2 LINE L2 0 3313 3250 1937 145 14 0 chr3 170757283 170757580 -56766998 - AluJb SINE Alu -11 301 1 556 196 10 0 chr3 170758786 170758883 -56765695 + MER2 DNA MER2_type 1 98 -247 321 206 82 0 chr3 170758883 170758956 -56765622 + Tigger5 DNA MER2_type 1 79 -2244 246 222 32 0 chr3 170758962 170759025 -56765553 - Tigger5 DNA MER2_type -15 2308 2244 644 210 174 9 chr3 170759038 170759257 -56765321 + MER2 DNA MER2_type 91 345 0 2183 93 10 3 chr3 170759444 170759733 -56764845 - AluSq SINE Alu -12 301 11 2172 121 61 0 chr3 170759882 170760245 -56764333 + L1MB7 LINE L1 5784 6168 -16 267 139 194 0 chr3 170762826 170762898 -56761680 - L1ME4a LINE L1 -69 6052 5967 481 302 99 22 chr3 170762965 170763197 -56761381 - MIR SINE MIR 0 262 13 232 139 0 0 chr3 170765411 170765447 -56759131 + tRNA-Lys-AAG tRNA tRNA 3 38 -38 2115 107 0 17 chr3 170765526 170765853 -56758725 - AluSc SINE Alu 0 322 1 21 0 0 0 chr3 170765920 170765941 -56758637 + AT_rich Low_complexity Low_complexity 1 21 0 621 266 125 25 chr3 170766275 170767100 -56757478 + L1ME3A LINE L1 4963 5897 -273 2294 124 3 0 chr3 170767174 170767481 -56757097 + AluSg SINE Alu 1 308 -2 637 250 23 12 chr3 170767770 170767942 -56756636 + L1MC4 LINE L1 6796 6969 -1073 253 232 174 0 chr3 170769733 170769802 -56754776 + L2 LINE L2 3227 3307 -6 392 237 118 32 chr3 170769850 170769943 -56754635 - L2 LINE L2 -23 3249 3149 205 254 179 15 chr3 170770069 170770136 -56754442 + L2 LINE L2 3236 3313 0 290 317 10 0 chr3 170770614 170770718 -56753860 - Charlie8 DNA MER1_type -2218 199 95 1911 277 107 31 chr3 170770734 170770913 -56753665 - L2 LINE L2 -756 2558 2394 1959 128 79 17 chr3 170770913 170770977 -56753601 - THE1C LTR MaLR 0 375 316 2229 97 3 38 chr3 170770977 170771297 -56753281 + AluY SINE Alu 1 309 -2 1959 128 79 17 chr3 170771297 170771585 -56752993 - THE1C LTR MaLR -59 316 1 1911 277 107 31 chr3 170771585 170772142 -56752436 - L2 LINE L2 -920 2394 1766 1270 123 0 0 chr3 170772142 170772313 -56752265 + AluSx SINE Alu 1 171 -141 2134 125 3 0 chr3 170772714 170773009 -56751569 - AluSg SINE Alu -14 296 1 7154 61 3 1 chr3 170774051 170775464 -56749114 + L1P1 LINE L1 4329 5742 -413 356 174 12 12 chr3 170775587 170775673 -56748905 + L1MA9 LINE L1 6227 6312 0 187 364 57 0 chr3 170775841 170775929 -56748649 - MIR SINE MIR -80 182 90 319 258 125 16 chr3 170776001 170776129 -56748449 + MIR SINE MIR 66 207 -55 306 0 0 0 chr3 170776332 170776366 -56748212 + (TG)n Simple_repeat Simple_repeat 2 35 0 1118 179 113 39 chr3 170776368 170776506 -56748072 - AluJb SINE Alu -36 276 150 180 0 0 0 chr3 170776506 170776526 -56748052 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 1118 179 113 39 chr3 170776526 170776644 -56747934 - AluJb SINE Alu -162 150 1 596 249 94 15 chr3 170777000 170777201 -56747377 - MLT1I LTR MaLR -192 217 1 8944 38 7 10 chr3 170778007 170779213 -56745365 - L1P LINE L1 -3594 2552 1351 336 324 117 28 chr3 170779518 170779697 -56744881 - MIR SINE MIR -62 200 6 21 0 0 0 chr3 170780256 170780277 -56744301 + AT_rich Low_complexity Low_complexity 1 21 0 362 351 70 55 chr3 170780445 170780716 -56743862 + L2 LINE L2 2976 3250 -22 470 237 21 0 chr3 170782023 170782120 -56742458 + MIR SINE MIR 70 168 -94 318 191 108 119 chr3 170782379 170782630 -56741948 - MER34 LTR ERV1 0 542 295 487 328 59 24 chr3 170783012 170783265 -56741313 + MIR SINE MIR 1 262 0 987 134 0 7 chr3 170784016 170784165 -56740413 + AluSx SINE Alu 159 306 -6 2156 101 14 0 chr3 170784363 170784659 -56739919 + AluSx SINE Alu 1 300 -12 1236 125 0 5 chr3 170785253 170785445 -56739133 - L1PA15 LINE L1 -251 5914 5724 26 0 0 0 chr3 170785467 170785493 -56739085 + AT_rich Low_complexity Low_complexity 1 26 0 3880 164 23 5 chr3 170785510 170786278 -56738300 - L1PB1 LINE L1 0 6853 6072 1147 174 39 32 chr3 170786389 170786867 -56737711 + L1M1 LINE L1 3356 3829 -3736 785 217 17 0 chr3 170786864 170787039 -56737539 + L1M1 LINE L1 4058 4235 -3330 * 1066 166 40 6 chr3 170787068 170787243 -56737335 + AluJb SINE Alu 1 181 -131 359 192 0 13 chr3 170787250 170787328 -56737250 + AluSg/x SINE Alu 219 295 -5 14223 189 48 19 chr3 170787519 170789807 -56734771 - L1PB1 LINE L1 -1865 4983 2763 692 209 0 8 chr3 170789807 170789936 -56734642 - FLAM_A SINE Alu -4 129 2 14223 189 48 19 chr3 170789936 170790522 -56734056 - L1PB1 LINE L1 -4085 2763 2196 2292 121 0 0 chr3 170790522 170790829 -56733749 + AluSq SINE Alu 1 307 -6 14223 189 48 19 chr3 170790829 170792714 -56731864 - L1PB1 LINE L1 -4652 2196 79 2346 41 0 0 chr3 170792715 170792985 -56731593 + AluY SINE Alu 1 270 -41 664 289 94 0 chr3 170793020 170793221 -56731357 + MIR SINE MIR 38 257 -5 415 195 333 8 chr3 170793682 170793805 -56730773 + MER5A DNA MER1_type 27 189 0 795 163 102 7 chr3 170794922 170795069 -56729509 - MER5B DNA MER1_type -4 174 14 2115 143 18 26 chr3 170795258 170795649 -56728929 + MLT1B LTR MaLR 3 390 0 2180 93 0 4 chr3 170796145 170796424 -56728154 - AluSg SINE Alu -9 301 24 1984 121 29 0 chr3 170797335 170797615 -56726963 - AluSx SINE Alu -24 288 1 24 0 0 0 chr3 170797695 170797719 -56726859 + AT_rich Low_complexity Low_complexity 1 24 0 383 280 0 21 chr3 170797778 170797921 -56726657 - L1ME LINE L1 -443 5727 5588 1417 136 0 41 chr3 170797940 170798196 -56726382 + AluSg/x SINE Alu 71 317 0 362 197 129 11 chr3 170798206 170798321 -56726257 - L1MD3 LINE L1 -463 7520 7220 567 198 8 16 chr3 170798322 170798443 -56726135 - MLT1F1 LTR MaLR -443 124 5 1271 212 72 47 chr3 170798445 170798664 -56725914 - L1MD3 LINE L1 -718 7277 7065 189 0 0 0 chr3 170798664 170798685 -56725893 + (TATG)n Simple_repeat Simple_repeat 4 24 0 1271 212 72 47 chr3 170798685 170798833 -56725745 - L1MD3 LINE L1 -930 7065 6897 2292 109 0 3 chr3 170798833 170799145 -56725433 - AluY SINE Alu 0 311 1 1271 212 72 47 chr3 170799145 170799177 -56725401 - L1MD3 LINE L1 -1098 6897 6867 241 128 0 0 chr3 170799183 170799222 -56725356 - L1MB7 LINE L1 -12 6172 6134 248 133 0 22 chr3 170799246 170799291 -56725287 - L1MD3 LINE L1 -464 7531 7488 * 603 244 33 17 chr3 170799284 170799464 -56725114 - L1MB8 LINE L1 -69 6109 5927 * 1490 227 34 52 chr3 170799446 170799577 -56725001 - L1MD3 LINE L1 -1108 6887 6755 1739 109 25 0 chr3 170799577 170799839 -56724739 + AluSx SINE Alu 38 305 0 1490 227 34 52 chr3 170799839 170800146 -56724432 - L1MD3 LINE L1 -1240 6755 6456 22 56 0 0 chr3 170800146 170800182 -56724396 + AT_rich Low_complexity Low_complexity 1 36 0 1141 258 58 36 chr3 170800935 170801380 -56723198 + MLT1C LTR MaLR 6 460 -7 536 204 84 0 chr3 170801383 170801525 -56723053 - L1MC4a LINE L1 -1373 6435 6282 805 211 80 0 chr3 170801556 170801769 -56722809 - L1ME2 LINE L1 -273 5891 5662 1418 209 8 0 chr3 170802200 170802458 -56722120 + AluSx SINE Alu 40 299 -13 543 275 96 12 chr3 170802916 170803156 -56721422 - MIR SINE MIR -1 261 2 234 300 14 0 chr3 170803893 170803963 -56720615 + MIR3 SINE MIR 124 194 -14 614 65 0 0 chr3 170804297 170804374 -56720204 + AluSc SINE Alu 6 82 -227 232 369 10 0 chr3 170805075 170805178 -56719400 + CT-rich Low_complexity Low_complexity 5 108 0 766 233 71 73 chr3 170805363 170805663 -56718915 + MLT1H1 LTR MaLR 1 319 -248 2331 67 37 3 chr3 170805663 170805960 -56718618 + AluSc SINE Alu 3 309 0 766 233 71 73 chr3 170805960 170806204 -56718374 + MLT1H1 LTR MaLR 319 562 -5 361 297 51 22 chr3 170806235 170806373 -56718205 - L2 LINE L2 0 3313 3172 575 284 78 5 chr3 170806392 170806610 -56717968 + L2 LINE L2 1342 1575 -1739 1330 277 42 23 chr3 170806657 170807137 -56717441 + L2 LINE L2 2181 2669 -645 445 196 131 26 chr3 170807784 170807937 -56716641 + MER112 DNA MER1_type 2 170 -90 645 203 117 15 chr3 170807938 170808135 -56716443 + L1MC5 LINE L1 7696 7912 -49 301 233 27 0 chr3 170808160 170808233 -56716345 + MER112 DNA MER1_type 178 252 -8 24 0 0 0 chr3 170810746 170810770 -56713808 + AT_rich Low_complexity Low_complexity 1 24 0 2374 93 0 3 chr3 170811320 170811631 -56712947 - AluSg SINE Alu 0 310 1 7084 175 3 15 chr3 170811670 170812445 -56712133 - L1PA13 LINE L1 -7 6156 5373 3269 91 13 7 chr3 170812445 170812895 -56711683 - MLT2A2 LTR ERVL 0 453 1 7084 175 3 15 chr3 170812895 170814312 -56710266 - L1PA13 LINE L1 -790 5373 3968 1051 186 65 0 chr3 170814312 170814543 -56710035 + ORSL DNA AcHobo 11 256 -19 24 0 0 0 chr3 170814835 170814859 -56709719 + AT_rich Low_complexity Low_complexity 1 24 0 752 199 18 6 chr3 170815397 170815563 -56709015 + MER58B DNA MER1_type 1 168 -173 976 197 41 5 chr3 170815563 170815781 -56708797 + MER58B DNA MER1_type 116 341 0 2024 120 34 3 chr3 170815852 170816143 -56708435 - AluSq SINE Alu -13 300 1 805 282 43 13 chr3 170816200 170816434 -56708144 - MIR SINE MIR -16 246 6 1191 183 171 37 chr3 170816516 170816838 -56707740 - MLT1A1 LTR MaLR 0 365 1 189 121 0 0 chr3 170818802 170818835 -56705743 + (ATG)n Simple_repeat Simple_repeat 1 33 0 6344 128 13 17 chr3 170821001 170822399 -56702179 - L1MA4A LINE L1 -1 6302 4910 14223 178 44 17 chr3 170823975 170828088 -56696490 - L1PB4 LINE L1 0 6858 2857 692 209 0 8 chr3 170828088 170828217 -56696361 - FLAM_A SINE Alu -4 129 2 14223 178 44 17 chr3 170828217 170828803 -56695775 - L1PB4 LINE L1 -4001 2857 2288 2292 121 0 0 chr3 170828803 170829110 -56695468 + AluSq SINE Alu 1 307 -6 14223 178 44 17 chr3 170829110 170830995 -56693583 - L1PB4 LINE L1 -4570 2288 79 2346 41 0 0 chr3 170830996 170831266 -56693312 + AluY SINE Alu 1 270 -41 664 289 94 0 chr3 170831301 170831502 -56693076 + MIR SINE MIR 38 257 -5 415 195 333 8 chr3 170831963 170832086 -56692492 + MER5A DNA MER1_type 27 189 0 795 163 102 7 chr3 170833203 170833350 -56691228 - MER5B DNA MER1_type -4 174 14 2115 143 18 26 chr3 170833539 170833930 -56690648 + MLT1B LTR MaLR 3 390 0 2180 93 0 4 chr3 170834426 170834705 -56689873 - AluSg SINE Alu -9 301 24 1984 121 29 0 chr3 170835616 170835896 -56688682 - AluSx SINE Alu -24 288 1 24 0 0 0 chr3 170835976 170836000 -56688578 + AT_rich Low_complexity Low_complexity 1 24 0 383 280 0 21 chr3 170836059 170836202 -56688376 - L1ME LINE L1 -443 5727 5588 1417 136 0 41 chr3 170836221 170836477 -56688101 + AluSg/x SINE Alu 73 319 0 362 197 129 11 chr3 170836487 170836602 -56687976 - L1MD3 LINE L1 -463 7520 7220 567 198 8 16 chr3 170836603 170836724 -56687854 - MLT1F1 LTR MaLR -443 124 5 1630 176 73 40 chr3 170836726 170836942 -56687636 - L1MD3 LINE L1 -718 7277 7070 189 0 0 0 chr3 170836942 170836963 -56687615 + (TATG)n Simple_repeat Simple_repeat 4 24 0 1630 176 73 40 chr3 170836963 170837111 -56687467 - L1MD3 LINE L1 -925 7070 6896 2230 119 0 3 chr3 170837111 170837423 -56687155 - AluY SINE Alu 0 311 1 1630 176 73 40 chr3 170837423 170837455 -56687123 - L1MD3 LINE L1 -1099 6896 6867 241 128 0 0 chr3 170837461 170837500 -56687078 - L1MB7 LINE L1 -12 6172 6134 248 133 0 22 chr3 170837524 170837569 -56687009 - L1MD3 LINE L1 -464 7531 7488 * 603 244 33 17 chr3 170837562 170837742 -56686836 - L1MB8 LINE L1 -69 6109 5927 * 1563 226 29 52 chr3 170837724 170837857 -56686721 - L1MD3 LINE L1 -1108 6887 6753 1739 109 25 0 chr3 170837857 170838119 -56686459 + AluSx SINE Alu 38 305 0 1563 226 29 52 chr3 170838119 170838426 -56686152 - L1MD3 LINE L1 -1242 6753 6456 22 56 0 0 chr3 170838426 170838462 -56686116 + AT_rich Low_complexity Low_complexity 1 36 0 1141 258 58 36 chr3 170839218 170839663 -56684915 + MLT1C LTR MaLR 6 460 -7 536 204 84 0 chr3 170839666 170839808 -56684770 - L1MC4a LINE L1 -1373 6435 6282 822 215 75 0 chr3 170839839 170840053 -56684525 - L1ME2 LINE L1 -273 5891 5662 1336 206 80 54 chr3 170841995 170842533 -56682045 - L1ME2 LINE L1 -972 5174 4623 205 156 0 0 chr3 170842564 170842596 -56681982 + (CA)n Simple_repeat Simple_repeat 1 32 0 488 273 0 0 chr3 170842622 170842761 -56681817 - L1ME3A LINE L1 -14 6156 6018 1095 233 72 27 chr3 170842786 170843229 -56681349 - L1ME3A LINE L1 -278 5892 5430 4118 170 42 16 chr3 170843233 170844136 -56680442 - L1MB3 LINE L1 -4 6179 5255 1900 146 133 23 chr3 170844136 170844520 -56680058 - MSTA LTR MaLR 0 428 3 4118 170 42 16 chr3 170844520 170844582 -56679996 - L1MB3 LINE L1 -928 5255 5196 310 203 51 25 chr3 170846730 170846809 -56677769 - MLT1L LTR MaLR -534 81 1 693 230 37 9 chr3 170847029 170847246 -56677332 + L1ME LINE L1 5309 5531 -635 547 267 38 107 chr3 170847438 170848146 -56676432 + L1MEd LINE L1 814 1472 -4900 338 241 89 35 chr3 170848151 170848284 -56676294 + L1MEd LINE L1 1388 1503 -4881 831 246 47 24 chr3 170848756 170849214 -56675364 + L1M1 LINE L1 3486 3954 -3611 2142 94 17 10 chr3 170850010 170850309 -56674269 + AluSg SINE Alu 1 301 -9 249 172 149 46 chr3 170850814 170850901 -56673677 - L1ME3A LINE L1 -10 6160 6065 23 33 0 0 chr3 170852453 170852483 -56672095 + GC_rich Low_complexity Low_complexity 1 30 0 234 137 27 14 chr3 170852572 170852645 -56671933 + (CCG)n Simple_repeat Simple_repeat 3 76 0 312 299 125 73 chr3 170852824 170853416 -56671162 - L1M2 LINE L1 -5481 1368 709 21 0 0 0 chr3 170853482 170853503 -56671075 + AT_rich Low_complexity Low_complexity 1 21 0 228 256 135 47 chr3 170860052 170860267 -56664311 + L1ME LINE L1 5636 5869 -252 24 0 0 0 chr3 170860798 170860822 -56663756 + AT_rich Low_complexity Low_complexity 1 24 0 2455 77 0 3 chr3 170862929 170863239 -56661339 - AluY SINE Alu -2 309 1 306 256 196 15 chr3 170863912 170864045 -56660533 + MIR SINE MIR 36 192 -70 394 162 0 0 chr3 170864210 170864305 -56660273 - AluSp/q SINE Alu 0 313 219 1672 210 39 29 chr3 170865018 170865403 -56659175 + MLT1D LTR MaLR 117 505 0 520 311 55 6 chr3 170865661 170865844 -56658734 + MIR SINE MIR 41 232 -30 927 198 86 0 chr3 170866539 170866736 -56657842 + MER20 DNA MER1_type 5 218 -1 750 284 145 22 chr3 170867133 170867534 -56657044 + L2 LINE L2 2460 2909 -405 45 19 0 0 chr3 170868239 170868291 -56656287 + AT_rich Low_complexity Low_complexity 1 52 0 669 231 70 47 chr3 170869640 170869896 -56654682 - MIR SINE MIR 0 262 1 2223 113 3 0 chr3 170870645 170870938 -56653640 + AluSp SINE Alu 1 294 -19 205 203 62 0 chr3 170871500 170871564 -56653014 + GA-rich Low_complexity Low_complexity 2 69 0 493 303 63 40 chr3 170871620 170871795 -56652783 + MIR SINE MIR 32 210 -52 1582 161 173 95 chr3 170872281 170872767 -56651811 + L1MCa LINE L1 178 701 -5725 1852 169 0 7 chr3 170872768 170873075 -56651503 + AluJo SINE Alu 1 305 -7 22 0 0 0 chr3 170874085 170874107 -56650471 + AT_rich Low_complexity Low_complexity 1 22 0 441 291 123 30 chr3 170874253 170874456 -56650122 + MIR SINE MIR 27 248 -14 214 287 81 0 chr3 170875426 170875513 -56649065 + L2 LINE L2 3219 3312 -1 27 29 0 0 chr3 170875593 170875627 -56648951 + AT_rich Low_complexity Low_complexity 1 34 0 1968 122 66 12 chr3 170876718 170877038 -56647540 - MER1B DNA MER1_type 0 337 1 377 252 175 7 chr3 170878263 170878406 -56646172 - MIR SINE MIR -44 218 52 422 239 188 61 chr3 170878878 170879091 -56645487 + MIR SINE MIR 2 241 -21 394 162 0 0 chr3 170879638 170879733 -56644845 - AluSp/q SINE Alu 0 313 219 1672 210 39 29 chr3 170880453 170880838 -56643740 + MLT1D LTR MaLR 117 505 0 520 311 55 6 chr3 170881096 170881279 -56643299 + MIR SINE MIR 41 232 -30 927 198 86 0 chr3 170881974 170882171 -56642407 + MER20 DNA MER1_type 5 218 -1 607 305 148 22 chr3 170882568 170882968 -56641610 + L2 LINE L2 2460 2909 -405 45 19 0 0 chr3 170883673 170883725 -56640853 + AT_rich Low_complexity Low_complexity 1 52 0 669 231 70 47 chr3 170885072 170885328 -56639250 - MIR SINE MIR 0 262 1 2223 113 3 0 chr3 170886077 170886370 -56638208 + AluSp SINE Alu 1 294 -19 205 203 62 0 chr3 170886932 170886996 -56637582 + GA-rich Low_complexity Low_complexity 2 69 0 493 303 63 40 chr3 170887052 170887227 -56637351 + MIR SINE MIR 32 210 -52 5080 158 81 72 chr3 170887713 170888200 -56636378 + L1MCa LINE L1 178 659 -5767 1657 179 0 4 chr3 170888200 170888474 -56636104 + AluJo SINE Alu 1 273 -39 5080 158 81 72 chr3 170888474 170889215 -56635363 + L1MCa LINE L1 659 1418 -5008 3901 223 110 46 chr3 170889228 170889934 -56634644 + L1MB2 LINE L1 1175 1834 -4548 1902 152 0 3 chr3 170889934 170890231 -56634347 - AluJb SINE Alu -16 296 1 3901 223 110 46 chr3 170890231 170890729 -56633849 + L1MB2 LINE L1 1834 2299 -4083 2153 101 0 10 chr3 170890729 170891027 -56633551 + AluSg SINE Alu 3 297 -13 3901 223 110 46 chr3 170891027 170891278 -56633300 + L1MB2 LINE L1 2299 2532 -3850 1863 142 24 3 chr3 170891278 170891573 -56633005 + AluSq SINE Alu 1 301 -12 3901 223 110 46 chr3 170891573 170892631 -56631947 + L1MB2 LINE L1 2532 3845 -2537 7353 98 1 3 chr3 170892657 170893675 -56630903 - L1P LINE L1 -4756 1390 375 6935 47 12 11 chr3 170893675 170895168 -56629410 + L1PA5 LINE L1 4660 6154 0 1657 201 24 3 chr3 170895186 170895525 -56629053 + L1MC1 LINE L1 5885 6230 -103 1355 143 18 0 chr3 170895526 170895749 -56628829 + L1MC1 LINE L1 6107 6333 0 6478 193 48 33 chr3 170895770 170897060 -56627518 + L1MB2 LINE L1 3858 5127 -1280 270 0 0 0 chr3 170897060 170897090 -56627488 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 6478 193 48 33 chr3 170897090 170898298 -56626280 + L1MB2 LINE L1 5127 6405 -2 3198 160 68 28 chr3 170898309 170899075 -56625503 + L1MCa LINE L1 1741 2535 -3891 228 122 0 0 chr3 170899666 170899707 -56624871 + (ATG)n Simple_repeat Simple_repeat 3 43 0 1775 226 28 97 chr3 170900309 170900507 -56624071 + L1MCa LINE L1 2528 2738 -3688 2083 112 24 7 chr3 170900507 170900803 -56623775 + AluSx SINE Alu 1 301 -11 1775 226 28 97 chr3 170900803 170901391 -56623187 + L1MCa LINE L1 2738 3260 -3166 5397 208 77 24 chr3 170901399 170903861 -56620717 + L1MB4 LINE L1 112 2690 -3736 3598 180 46 28 chr3 170903858 170904062 -56620516 + L1MB4 LINE L1 2919 3118 -3308 * 1360 161 150 8 chr3 170904062 170904322 -56620256 + AluJb SINE Alu 1 297 -5 3598 180 46 28 chr3 170904322 170905096 -56619482 + L1MB4 LINE L1 3118 3877 -2549 2333 116 0 0 chr3 170905096 170905406 -56619172 + AluSx SINE Alu 1 310 -2 3598 180 46 28 chr3 170905406 170905543 -56619035 + L1MB4 LINE L1 3877 4677 -1749 427 228 0 0 chr3 170905538 170905617 -56618961 + THE1C-int LTR MaLR 837 915 -736 * 5352 186 60 12 chr3 170905617 170906649 -56617929 + THE1C-int LTR MaLR 553 1634 -17 4906 115 23 7 chr3 170906651 170907422 -56617156 + L1MA4 LINE L1 5512 6295 -5 4323 241 34 75 chr3 170907422 170907617 -56616961 + L1MCa LINE L1 3248 3450 -2976 1782 155 19 26 chr3 170907617 170907926 -56616652 + AluJb SINE Alu 1 307 -5 4323 241 34 75 chr3 170907926 170908756 -56615822 + L1MCa LINE L1 3450 4313 -2113 2211 107 0 10 chr3 170908756 170909055 -56615523 + AluSx SINE Alu 6 301 -11 4323 241 34 75 chr3 170909055 170909509 -56615069 + L1MCa LINE L1 4313 4784 -1642 1961 125 52 33 chr3 170909509 170909877 -56614701 + THE1C LTR MaLR 1 375 0 4323 241 34 75 chr3 170909877 170910759 -56613819 + L1MCa LINE L1 4784 5386 -1040 805 194 6 0 chr3 170910791 170910951 -56613627 - L1 LINE L1 -1511 4635 4475 4419 165 68 3 chr3 170910997 170911990 -56612588 + L1MB4 LINE L1 5391 6460 0 687 260 135 46 chr3 170912028 170912444 -56612134 + L1ME3A LINE L1 4628 5080 -1066 2176 95 3 0 chr3 170912470 170912782 -56611796 + AluY SINE Alu 1 313 0 1172 264 75 55 chr3 170912959 170913675 -56610903 + L1ME3A LINE L1 5336 6066 -104 3911 242 159 20 chr3 170913790 170915143 -56609435 + L2 LINE L2 1239 2779 -535 2284 95 0 3 chr3 170915191 170915495 -56609083 - AluSc SINE Alu -6 303 1 770 203 0 0 chr3 170915591 170915724 -56608854 + FLAM_A SINE Alu 1 133 0 21 57 0 0 chr3 170915907 170915942 -56608636 + AT_rich Low_complexity Low_complexity 1 35 0 317 293 98 8 chr3 170916180 170916313 -56608265 + MIR SINE MIR 61 205 -57 604 176 53 30 chr3 170916428 170916559 -56608019 - MER97c DNA MER1_type? -913 177 44 255 61 0 0 chr3 170916585 170916618 -56607960 + (TTCA)n Simple_repeat Simple_repeat 2 34 0 2231 108 0 0 chr3 170916708 170917003 -56607575 + AluSg SINE Alu 1 295 -15 5359 55 3 0 chr3 170917004 170917678 -56606900 + L1PA6 LINE L1 5479 6154 0 288 228 61 26 chr3 170918285 170918399 -56606179 + L1ME1 LINE L1 452 569 -5961 263 200 29 0 chr3 170918423 170918493 -56606085 + L1ME1 LINE L1 5528 5599 -941 1313 202 13 0 chr3 170918493 170918761 -56605817 + AluJo SINE Alu 47 317 0 3230 207 25 44 chr3 170918766 170919695 -56604883 + L1ME1 LINE L1 5585 6644 -84 241 210 25 12 chr3 170919763 170919844 -56604734 + L1MA10 LINE L1 6249 6330 -4 368 272 49 35 chr3 170919898 170920143 -56604435 + L1MEd LINE L1 2449 2687 -3853 1667 154 52 19 chr3 170920153 170920420 -56604158 + AluJo SINE Alu 3 278 -34 342 267 152 18 chr3 170920444 170920609 -56603969 + L1MEd LINE L1 2666 2852 -3688 1353 154 46 23 chr3 170920661 170920967 -56603611 + MER33 DNA MER1_type 1 313 -11 611 164 0 0 chr3 170921012 170921128 -56603450 + L1MB8 LINE L1 6061 6176 -2 379 274 135 33 chr3 170921181 170921396 -56603182 + L1MEd LINE L1 3076 3312 -3228 524 116 0 0 chr3 170921530 170921599 -56602979 + U6 snRNA snRNA 1 69 -38 280 239 162 0 chr3 170922016 170922133 -56602445 + L1MEd LINE L1 3353 3488 -3052 495 276 0 8 chr3 170922444 170922567 -56602011 + L2 LINE L2 3187 3308 -5 3690 137 42 0 chr3 170922961 170923587 -56600991 - L1MB3 LINE L1 -7 6176 5525 241 241 91 22 chr3 170923742 170923898 -56600680 + L1MEd LINE L1 4171 4340 -2200 349 321 40 67 chr3 170923937 170924028 -56600550 - L1M4 LINE L1 -1978 4168 4076 2388 77 0 10 chr3 170924028 170924327 -56600251 - AluSq SINE Alu -17 296 1 349 321 40 67 chr3 170924327 170924459 -56600119 - L1M4 LINE L1 -2070 4076 3951 2906 215 86 43 chr3 170924627 170925640 -56598938 + L1MC3 LINE L1 6716 7771 -14 1952 140 0 4 chr3 170926091 170926369 -56598209 + AluSx SINE Alu 5 281 -31 344 309 11 11 chr3 170926392 170926486 -56598092 - MIR SINE MIR -161 101 8 576 0 0 0 chr3 170928048 170928112 -56596466 + (CTG)n Simple_repeat Simple_repeat 2 65 0 1972 167 7 0 chr3 170928112 170928412 -56596166 - AluJo SINE Alu -10 302 1 258 160 0 0 chr3 170928420 170928470 -56596108 + CT-rich Low_complexity Low_complexity 3 52 0 291 54 0 0 chr3 170929360 170929397 -56595181 + (TG)n Simple_repeat Simple_repeat 1 37 0 2047 237 40 31 chr3 170929470 170930053 -56594525 - L1ME3 LINE L1 -22 6140 5553 755 159 11 33 chr3 170930202 170930384 -56594194 + GA-rich Low_complexity Low_complexity 3 180 0 349 225 0 14 chr3 170931463 170931534 -56593044 + L2 LINE L2 3222 3291 -22 321 342 180 11 chr3 170932328 170932778 -56591800 - L2 LINE L2 -681 2633 2108 38 0 0 0 chr3 170933819 170933857 -56590721 + AT_rich Low_complexity Low_complexity 1 38 0 2925 217 74 40 chr3 170933948 170934259 -56590319 - L1ME2 LINE L1 -1 6163 5864 1595 144 23 112 chr3 170934259 170934607 -56589971 - AluYb8 SINE Alu -1 317 1 2925 217 74 40 chr3 170934607 170935343 -56589235 - L1ME2 LINE L1 -300 5864 5056 1980 143 3 3 chr3 170935343 170935636 -56588942 + AluSx SINE Alu 1 293 -19 2925 217 74 40 chr3 170935636 170936104 -56588474 - L1ME2 LINE L1 -1108 5056 4605 14542 41 0 3 chr3 170936104 170937829 -56586749 + HERV17 LTR ERV1 4300 6019 -2607 2451 55 0 0 chr3 170937851 170938143 -56586435 + HERV17 LTR ERV1 8335 8626 0 2765 49 0 0 chr3 170938143 170938468 -56586110 + LTR17 LTR ERV1 1 325 -455 237 98 0 0 chr3 170938469 170938510 -56586068 + (A)n Simple_repeat Simple_repeat 1 41 0 505 183 28 89 chr3 170938541 170938721 -56585857 - L1ME2 LINE L1 -1589 4557 4389 180 216 0 0 chr3 170938846 170938897 -56585681 + (CA)n Simple_repeat Simple_repeat 2 52 0 399 241 90 14 chr3 170938970 170939115 -56585463 + L1ME3A LINE L1 5995 6150 -20 27 29 0 0 chr3 170939119 170939153 -56585425 + AT_rich Low_complexity Low_complexity 1 34 0 293 293 53 30 chr3 170939749 170939882 -56584696 + L2 LINE L2 3137 3272 0 322 303 57 58 chr3 170940010 170940183 -56584395 - MIR SINE MIR -61 201 31 1784 172 10 3 chr3 170940291 170940593 -56583985 - AluSx SINE Alu -8 304 1 672 152 13 143 chr3 170940724 170940954 -56583624 + LTR37A LTR ERV1 227 426 0 1811 95 103 0 chr3 170941447 170941700 -56582878 + AluSx SINE Alu 1 279 -33 209 57 29 0 chr3 170941704 170941739 -56582839 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 529 263 101 6 chr3 170942008 170942187 -56582391 + MIR SINE MIR 64 259 -3 1846 107 41 28 chr3 170942934 170943253 -56581325 - THE1C LTR MaLR -52 323 1 1860 181 0 0 chr3 170943468 170943777 -56580801 - AluJo SINE Alu -1 311 3 227 348 9 0 chr3 170944965 170945080 -56579498 + L1ME LINE L1 5544 5659 -511 * 391 282 54 60 chr3 170945077 170945208 -56579370 + L1MEc LINE L1 1381 1511 -1065 2455 57 0 0 chr3 170945208 170945504 -56579074 - AluY SINE Alu -15 296 1 391 282 54 60 chr3 170945504 170945766 -56578812 + L1MEc LINE L1 1511 1712 -864 1531 241 12 6 chr3 170945918 170946066 -56578512 + L1M3c LINE L1 1357 1503 -5993 1617 136 0 8 chr3 170946066 170946308 -56578270 + AluSg/x SINE Alu 66 305 -7 1531 241 12 6 chr3 170946308 170946500 -56578078 + L1M3c LINE L1 1503 1699 -5797 4050 218 65 22 chr3 170946505 170946858 -56577720 + L1M3c LINE L1 3513 3850 -3715 2259 108 13 0 chr3 170946858 170947163 -56577415 + AluSx SINE Alu 1 309 -3 4050 218 65 22 chr3 170947163 170948155 -56576423 + L1M3c LINE L1 3850 4927 -2638 4642 166 82 8 chr3 170948155 170949212 -56575366 + L1MA4A LINE L1 5143 6280 -23 2282 144 10 3 chr3 170949208 170949597 -56574981 + L1M3c LINE L1 4908 5299 -2266 * 5154 17 0 0 chr3 170949591 170950189 -56574389 - L1PA4 LINE L1 -1411 4735 4138 7546 31 0 0 chr3 170950189 170951593 -56572985 + L1PA4 LINE L1 4749 6152 -3 2862 168 5 35 chr3 170951626 170951862 -56572716 + L1M3c LINE L1 5287 5528 -2037 2273 132 8 8 chr3 170951862 170952217 -56572361 + THE1A LTR MaLR 1 355 0 2862 168 5 35 chr3 170952217 170952587 -56571991 + L1M3c LINE L1 5528 5875 -1690 390 210 0 0 chr3 170952594 170952656 -56571922 + AluJ/FLAM SINE Alu 7 68 -234 198 272 29 68 chr3 170953817 170953836 -56570742 + MER5A DNA MER1_type 10 28 -161 2032 158 0 0 chr3 170953836 170954146 -56570432 + AluSx SINE Alu 1 310 -2 198 272 29 68 chr3 170954146 170954229 -56570349 + MER5A DNA MER1_type 28 108 -81 8599 70 16 2 chr3 170954616 170956522 -56568056 - L1PA7 LINE L1 -16 6138 4192 298 197 49 0 chr3 170957022 170957083 -56567495 + L2 LINE L2 3227 3290 -23 2322 134 41 9 chr3 170957091 170957715 -56566863 + MER39 LTR ERV1 8 697 -10 366 286 32 88 chr3 170958192 170958409 -56566169 - L2 LINE L2 -40 3232 3028 1621 134 4 22 chr3 170958481 170958775 -56565803 + L1MC1 LINE L1 5472 5754 -579 1918 143 6 52 chr3 170958775 170959140 -56565438 + L1MC1 LINE L1 5975 6322 -11 25 51 0 0 chr3 170959140 170959179 -56565399 + AT_rich Low_complexity Low_complexity 1 39 0 1405 276 47 10 chr3 170959326 170959811 -56564767 - L1MC4a LINE L1 -1868 5940 5438 2363 93 0 3 chr3 170959887 170960197 -56564381 - AluSc SINE Alu 0 309 1 669 293 43 24 chr3 170960594 170961008 -56563570 - L1MC4a LINE L1 -1302 4844 4418 2285 95 0 0 chr3 170961008 170961375 -56563203 - AluSx SINE Alu 0 367 1 669 293 43 24 chr3 170961375 170961426 -56563152 - L1MC4a LINE L1 -1728 4418 4369 853 233 0 0 chr3 170961437 170961596 -56562982 - FAM SINE Alu -16 159 1 288 357 16 8 chr3 170962911 170963037 -56561541 - MIR3 SINE MIR -4 204 78 1869 184 53 18 chr3 170963248 170963738 -56560840 - Charlie4a DNA MER1_type 0 508 2 1779 124 91 4 chr3 170964893 170965168 -56559410 + AluSc SINE Alu 1 299 -10 32 26 0 0 chr3 170965614 170965653 -56558925 + AT_rich Low_complexity Low_complexity 1 39 0 2165 130 10 0 chr3 170965722 170966030 -56558548 + AluSx SINE Alu 1 311 -1 803 152 269 18 chr3 170966236 170966407 -56558171 + AluJb SINE Alu 81 294 -18 9998 53 0 12 chr3 170967170 170968461 -56556117 + L1PA5 LINE L1 4097 5383 -779 2200 95 0 0 chr3 170968461 170968772 -56555806 + AluY SINE Alu 1 311 0 9998 53 0 12 chr3 170968772 170969543 -56555035 + L1PA5 LINE L1 5383 6162 0 288 256 11 56 chr3 170969808 170969898 -56554680 + L2 LINE L2 3228 3313 0 684 258 63 5 chr3 170970083 170970273 -56554305 - LTR67 LTR ERVL -8 549 349 241 257 40 50 chr3 170970363 170970464 -56554114 - LTR67 LTR ERVL -337 220 121 1595 177 35 11 chr3 170971956 170972238 -56552340 + AluJo SINE Alu 1 289 -23 543 122 78 0 chr3 170972437 170972527 -56552051 + FLAM_A SINE Alu 29 125 -17 843 105 73 0 chr3 170973670 170973794 -56550784 + FLAM_C SINE Alu 1 133 0 291 279 12 0 chr3 170974582 170974668 -56549910 - Charlie8 DNA MER1_type -2226 191 105 244 241 92 0 chr3 170975082 170975169 -56549409 - L1MC4a LINE L1 -1834 5974 5880 1554 148 53 32 chr3 170975338 170975621 -56548957 + AluJo SINE Alu 12 300 -12 386 167 22 67 chr3 170975699 170975789 -56548789 + U6 snRNA snRNA 22 107 0 2061 103 7 3 chr3 170977290 170977606 -56546972 - AluSc SINE Alu 0 309 1 1986 152 14 0 chr3 170977809 170977972 -56546606 - AluSx SINE Alu -18 294 124 189 0 0 0 chr3 170977972 170977993 -56546585 + (TG)n Simple_repeat Simple_repeat 2 22 0 1986 152 14 0 chr3 170977993 170978119 -56546459 - AluSx SINE Alu -188 124 1 268 226 128 88 chr3 170978214 170978316 -56546262 - MIR SINE MIR -68 140 35 252 143 0 0 chr3 170978863 170978905 -56545673 + (CA)n Simple_repeat Simple_repeat 2 43 0 415 279 61 27 chr3 170979299 170979446 -56545132 - MIR SINE MIR -103 159 8 393 168 193 8 chr3 170979721 170979840 -56544738 - MER69A DNA AcHobo -3 174 34 207 0 0 0 chr3 170980495 170980518 -56544060 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 690 118 109 0 chr3 170980797 170980907 -56543671 - FLAM_C SINE Alu -19 124 3 315 252 94 39 chr3 170981738 170981865 -56542713 + MIR3 SINE MIR 74 207 -1 601 271 111 24 chr3 170982018 170982306 -56542272 - L2 LINE L2 -5 3308 2996 395 338 74 46 chr3 170982297 170982478 -56542100 - L2 LINE L2 -668 2646 2471 * 2047 122 24 10 chr3 170982478 170982773 -56541805 + AluSx SINE Alu 2 300 -12 395 338 74 46 chr3 170982773 170983026 -56541552 - L2 LINE L2 -843 2471 2200 202 287 152 46 chr3 170983059 170983453 -56541125 - L2 LINE L2 -14 3299 2825 2409 123 60 26 chr3 170984478 170984894 -56539684 - Tigger2a DNA MER2_type 0 434 5 1836 152 70 3 chr3 170984978 170985321 -56539257 + MER47A DNA MER2_type 1 366 0 22 35 0 0 chr3 170985697 170985726 -56538852 + AT_rich Low_complexity Low_complexity 1 29 0 363 281 118 0 chr3 170985806 170985941 -56538637 - MIR SINE MIR -2 260 110 2094 125 3 3 chr3 170985955 170986250 -56538328 + AluSx SINE Alu 1 295 -17 1870 164 3 0 chr3 170987026 170987319 -56537259 - AluJo SINE Alu -18 294 1 441 249 5 58 chr3 170987348 170987537 -56537041 - L1MC5 LINE L1 -32 7929 7751 717 181 15 8 chr3 170987946 170988079 -56536499 + FAM SINE Alu 33 166 -19 2320 106 3 0 chr3 170988111 170988414 -56536164 + AluSp SINE Alu 1 304 -9 22 70 0 0 chr3 170988736 170988779 -56535799 + AT_rich Low_complexity Low_complexity 1 43 0 30 45 0 0 chr3 170988901 170988945 -56535633 + AT_rich Low_complexity Low_complexity 1 44 0 184 242 172 89 chr3 170989231 170989388 -56535190 + MER5B DNA MER1_type 1 170 -8 378 179 0 24 chr3 170990482 170990566 -56534012 + L1MC5 LINE L1 7832 7913 -48 6208 183 39 14 chr3 170990583 170991280 -56533298 + L1MB3 LINE L1 7 754 -5630 2414 99 3 0 chr3 170991280 170991592 -56532986 + AluSp SINE Alu 1 313 0 6208 183 39 14 chr3 170991592 170992200 -56532378 + L1MB3 LINE L1 754 1345 -5039 * 8366 190 23 64 chr3 170992197 170992910 -56531668 + L1MB3 LINE L1 3073 3814 -2605 731 184 8 0 chr3 170992910 170993035 -56531543 + FLAM_A SINE Alu 6 131 -11 8366 190 23 64 chr3 170993035 170995298 -56529280 + L1MB3 LINE L1 3814 6168 -251 2214 115 3 6 chr3 170995298 170995610 -56528968 + AluSx SINE Alu 1 311 -1 8366 190 23 64 chr3 170995610 170995642 -56528936 + L1MB3 LINE L1 6168 6200 -219 2014 157 0 0 chr3 170995642 170995954 -56528624 + AluSx SINE Alu 1 312 0 8366 190 23 64 chr3 170995954 170996303 -56528275 + L1MB3 LINE L1 6200 6411 -8 1277 178 72 8 chr3 170997611 170997875 -56526703 - AluJb SINE Alu -31 281 1 25 0 0 0 chr3 170998066 170998091 -56526487 + AT_rich Low_complexity Low_complexity 1 25 0 2185 126 3 0 chr3 170998358 170998668 -56525910 - AluSx SINE Alu 0 312 2 226 273 200 9 chr3 171000432 171000542 -56524036 - MIR SINE MIR -13 249 119 269 250 15 15 chr3 171000683 171000751 -56523827 + MER58A DNA MER1_type 18 85 -22 1413 185 131 15 chr3 171003609 171003944 -56520634 + L1ME1 LINE L1 5788 6161 -5 619 257 14 0 chr3 171004914 171005062 -56519516 + LTR33 LTR ERVL 358 507 -14 498 272 98 69 chr3 171005083 171005522 -56519056 + L2 LINE L2 2775 3227 -86 390 222 156 22 chr3 171005532 171005667 -56518911 - LTR33 LTR ERVL 0 521 369 384 314 101 39 chr3 171007386 171007593 -56516985 - L2 LINE L2 -5 3267 3048 1050 298 99 6 chr3 171007612 171008078 -56516500 + LTR33 LTR ERVL 6 514 -7 195 307 153 13 chr3 171008078 171008228 -56516350 - L2 LINE L2 -217 3055 2885 339 326 102 27 chr3 171008698 171008885 -56515693 + L2 LINE L2 3071 3271 -1 234 128 0 0 chr3 171009486 171009525 -56515053 + (TTTC)n Simple_repeat Simple_repeat 3 41 0 * 366 195 0 0 chr3 171009524 171009601 -56514977 + CT-rich Low_complexity Low_complexity 2 78 0 2384 137 6 19 chr3 171009741 171010107 -56514471 + MER46B DNA MER2_type 1 236 0 184 289 0 0 chr3 171010159 171010197 -56514381 + MIR SINE MIR 7 44 -218 473 143 121 0 chr3 171010217 171010308 -56514270 + L2 LINE L2 3211 3312 -1 * 620 280 48 5 chr3 171010307 171010496 -56514082 + MIR SINE MIR 57 253 -9 411 191 101 62 chr3 171010601 171010779 -56513799 - ORSL DNA AcHobo -47 228 44 275 206 47 47 chr3 171011438 171011545 -56513033 + L1ME4a LINE L1 5987 6093 -28 31 26 0 0 chr3 171011775 171011813 -56512765 + AT_rich Low_complexity Low_complexity 1 38 0 180 235 198 0 chr3 171012049 171012130 -56512448 + L2 LINE L2 2333 2429 -885 250 344 109 30 chr3 171012242 171012472 -56512106 - L2 LINE L2 -346 2968 2721 353 274 0 11 chr3 171012898 171012993 -56511585 - MIR SINE MIR -59 149 56 609 277 103 18 chr3 171013007 171013231 -56511347 - MIR SINE MIR -16 246 4 189 281 222 15 chr3 171016623 171016661 -56507917 + MIR SINE MIR 46 75 -187 1034 254 18 5 chr3 171016661 171016881 -56507697 + MER58A DNA MER1_type 2 224 0 189 281 222 15 chr3 171016881 171016977 -56507601 + MIR SINE MIR 75 208 -54 232 222 174 111 chr3 171016983 171017052 -56507526 + MER103 DNA DNA 13 76 -90 1365 163 27 90 chr3 171017052 171017380 -56507198 - AluJo SINE Alu 0 311 3 232 222 174 111 chr3 171017380 171017453 -56507125 + MER103 DNA DNA 76 165 -1 498 248 285 24 chr3 171017478 171017853 -56506725 + Charlie2a DNA MER1_type 2 474 -2388 1035 222 17 0 chr3 171017860 171018099 -56506479 + Charlie2a DNA MER1_type 766 1008 -1854 554 231 0 0 chr3 171018105 171018213 -56506365 + Charlie2a DNA MER1_type 2750 2857 -5 186 43 0 0 chr3 171019352 171019375 -56505203 + (TAA)n Simple_repeat Simple_repeat 1 23 0 234 208 132 75 chr3 171019605 171019711 -56504867 - MLT1L LTR MaLR -322 293 182 485 297 55 6 chr3 171022301 171022466 -56502112 + MIR SINE MIR 90 262 0 753 301 136 20 chr3 171022550 171022999 -56501579 - L2 LINE L2 -1 3312 2812 486 280 13 51 chr3 171022984 171023141 -56501437 + MIR3 SINE MIR 38 188 -20 * 1115 24 0 0 chr3 171024582 171024708 -56499870 + AluSg/x SINE Alu 173 298 -11 265 271 4 40 chr3 171025187 171025325 -56499253 + T-rich Low_complexity Low_complexity 5 217 0 393 261 70 35 chr3 171025882 171026024 -56498554 - L3b LINE CR1 -156 1427 1281 2388 143 92 2 chr3 171026040 171026433 -56498145 + MSTA LTR MaLR 1 428 0 579 261 128 5 chr3 171026476 171026671 -56497907 - MIR SINE MIR -42 220 2 180 179 0 0 chr3 171027203 171027242 -56497336 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 231 267 33 8 chr3 171027445 171027565 -56497013 + (TA)n Simple_repeat Simple_repeat 2 124 0 400 144 211 0 chr3 171029518 171029608 -56494970 + MER53 DNA DNA 2 110 -79 360 202 21 31 chr3 171030179 171030275 -56494303 - L1ME1 LINE L1 -1 6333 6080 2554 182 49 121 chr3 171030277 171031178 -56493400 - L1M4 LINE L1 -1665 4481 3646 543 143 48 24 chr3 171031184 171031310 -56493268 + LTR37A LTR ERV1 298 426 0 365 200 24 12 chr3 171031418 171031503 -56493075 + MER20B DNA MER1_type 691 776 -7 340 179 39 13 chr3 171031706 171031784 -56492794 - L1MB3 LINE L1 -322 5861 5782 3180 200 2 45 chr3 171031785 171032036 -56492542 - MER82 DNA MER2_type -1 652 392 2902 149 21 0 chr3 171032036 171032459 -56492119 - MSTB1 LTR MaLR 0 432 1 3180 200 2 45 chr3 171032459 171032852 -56491726 - MER82 DNA MER2_type -261 392 36 626 171 0 9 chr3 171032857 171032968 -56491610 - L1MB3 LINE L1 -400 5784 5675 780 246 47 5 chr3 171032969 171033184 -56491394 - L1MEc LINE L1 -3563 2652 2429 * 1923 264 57 48 chr3 171033178 171033951 -56490627 - L1MEc LINE L1 -5583 813 34 291 121 121 121 chr3 171034863 171034946 -56489632 - MIR3 SINE MIR -18 190 108 1889 198 20 65 chr3 171035148 171035638 -56488940 - LTR37B LTR ERV1 0 468 1 309 239 0 0 chr3 171035690 171035757 -56488821 - MER69 DNA AcHobo -10 2516 2450 * 321 231 44 22 chr3 171035754 171035845 -56488733 - MER69 DNA AcHobo -1079 147 55 2195 141 30 41 chr3 171035921 171036020 -56488558 - THE1B LTR MaLR 0 364 265 3559 143 110 3 chr3 171036020 171036593 -56487985 - MER51A LTR ERV1 0 634 1 2195 141 30 41 chr3 171036593 171036861 -56487717 - THE1B LTR MaLR -99 265 1 268 231 0 0 chr3 171037240 171037292 -56487286 + T-rich Low_complexity Low_complexity 3 54 0 881 176 0 11 chr3 171037294 171037476 -56487102 + CT-rich Low_complexity Low_complexity 1 180 0 996 113 11 17 chr3 171037495 171037672 -56486906 + (TTTC)n Simple_repeat Simple_repeat 2 177 0 516 142 0 113 chr3 171037676 171037782 -56486796 - FLAM_A SINE Alu -27 115 22 449 244 215 7 chr3 171037880 171038015 -56486563 - MIR SINE MIR -10 252 90 816 235 42 64 chr3 171038183 171038494 -56486084 - MLT1K LTR MaLR -18 570 267 2395 82 0 0 chr3 171041523 171041817 -56482761 - AluSq SINE Alu -19 294 1 669 167 90 7 chr3 171042306 171042450 -56482128 + MIR SINE MIR 107 262 0 777 193 47 35 chr3 171042709 171042963 -56481615 + LTR37B LTR ERV1 199 455 -13 3822 125 82 30 chr3 171043071 171043750 -56480828 - MER50 LTR ERV1 -19 715 1 379 223 48 39 chr3 171044448 171044551 -56480027 - MER5B DNA MER1_type 0 178 75 922 237 195 39 chr3 171045242 171045652 -56478926 + L2 LINE L2 1802 2275 -1039 2921 161 2 2 chr3 171045706 171046148 -56478430 - L1PA15 LINE L1 0 6165 5724 26 0 0 0 chr3 171046170 171046196 -56478382 + AT_rich Low_complexity Low_complexity 1 26 0 12283 175 40 67 chr3 171046213 171046609 -56477969 - L1PB1 LINE L1 0 6867 6462 228 104 0 21 chr3 171046609 171046657 -56477921 + LTR66 LTR ERVL 394 440 -170 12283 175 40 67 chr3 171046657 171049633 -56474945 - L1PB1 LINE L1 -405 6462 3407 859 133 0 0 chr3 171049633 171049753 -56474825 + AluSq/x SINE Alu 1 120 -192 251 35 0 0 chr3 171049753 171049782 -56474796 - U2 snRNA snRNA -159 29 1 1312 91 0 110 chr3 171049782 171050001 -56474577 + AluSc SINE Alu 101 295 -14 12283 175 40 67 chr3 171050001 171052557 -56472021 - L1PB1 LINE L1 -3457 3410 637 417 187 22 0 chr3 171052564 171052655 -56471923 - L1PB1 LINE L1 -6666 197 105 906 159 26 36 chr3 171052671 171052866 -56471712 - L1PB1 LINE L1 -6668 195 3 3554 117 13 0 chr3 171052874 171053607 -56470971 - L1P4 LINE L1 -420 5745 5005 2278 80 3 10 chr3 171053640 171053939 -56470639 - AluY SINE Alu -14 297 1 2884 196 67 17 chr3 171054114 171054941 -56469637 + L1MD3 LINE L1 6912 7994 -1 235 215 14 104 chr3 171055055 171055199 -56469379 + L1M4 LINE L1 4462 4592 -1554 999 242 34 4 chr3 171055214 171055483 -56469095 - Charlie1b DNA MER1_type -204 319 43 290 241 66 94 chr3 171055576 171055788 -56468790 - L1MC4 LINE L1 -11 8031 7826 836 233 27 90 chr3 171055824 171056159 -56468419 - L1ME2 LINE L1 -10 6154 5841 2053 118 6 16 chr3 171056586 171056899 -56467679 - AluSx SINE Alu 0 312 3 1759 122 0 61 chr3 171058704 171058999 -56465579 + AluSx SINE Alu 21 297 -15 218 310 69 11 chr3 171059801 171059888 -56464690 - L2 LINE L2 -19 3253 3162 204 327 67 10 chr3 171059886 171059990 -56464588 - MIR3 SINE MIR -15 193 84 * 400 318 98 25 chr3 171060182 171060497 -56464081 + L1ME LINE L1 5398 5735 -386 874 275 32 20 chr3 171060504 171060755 -56463823 - MIR SINE MIR -7 255 2 701 300 108 42 chr3 171060915 171061339 -56463239 + L1MC4a LINE L1 4030 4505 -1641 1651 161 17 14 chr3 171061339 171061631 -56462947 + AluJb SINE Alu 16 308 -4 701 300 108 42 chr3 171061631 171061796 -56462782 + L1MC4a LINE L1 4505 4658 -1488 3252 159 28 30 chr3 171061796 171062470 -56462108 + L1MB7 LINE L1 5512 6184 0 25 65 0 0 chr3 171062743 171062789 -56461789 + AT_rich Low_complexity Low_complexity 1 46 0 1784 251 53 19 chr3 171062792 171063361 -56461217 + L1MC4a LINE L1 5254 5841 -1967 21 0 0 0 chr3 171063608 171063629 -56460949 + AT_rich Low_complexity Low_complexity 1 21 0 736 174 0 8 chr3 171063750 171063906 -56460672 + AluJb SINE Alu 155 309 0 365 198 22 33 chr3 171064115 171064206 -56460372 + L1MC4a LINE L1 6554 6643 -1165 632 141 14 21 chr3 171064232 171064374 -56460204 + (TAGA)n Simple_repeat Simple_repeat 1 141 0 354 231 110 7 chr3 171064383 171064568 -56460010 + MER46C DNA MER2_type 1 237 -101 24 77 0 0 chr3 171064907 171064959 -56459619 + AT_rich Low_complexity Low_complexity 1 52 0 425 211 18 105 chr3 171065268 171065439 -56459139 + MIR SINE MIR 107 262 0 21 0 0 0 chr3 171066457 171066478 -56458100 + AT_rich Low_complexity Low_complexity 1 21 0 455 213 134 24 chr3 171067138 171067302 -56457276 - L1ME1 LINE L1 -44 6122 5941 225 154 0 0 chr3 171067420 171067459 -56457119 + (CA)n Simple_repeat Simple_repeat 1 39 0 22 0 0 0 chr3 171067548 171067570 -56457008 + AT_rich Low_complexity Low_complexity 1 22 0 976 161 0 0 chr3 171067669 171067831 -56456747 - FAM SINE Alu -4 45 1 1832 278 61 52 chr3 171068329 171068787 -56455791 + L2 LINE L2 2264 2716 -597 231 88 0 0 chr3 171068793 171068827 -56455751 + (TTCA)n Simple_repeat Simple_repeat 3 36 0 1952 126 0 10 chr3 171068827 171069114 -56455464 - AluSx SINE Alu -26 286 1 1832 278 61 52 chr3 171069114 171069578 -56455000 + L2 LINE L2 2716 3202 -111 798 256 23 30 chr3 171069578 171069840 -56454738 - MIR SINE MIR 0 262 3 1832 278 61 52 chr3 171069840 171069953 -56454625 + L2 LINE L2 3202 3312 -1 310 306 99 0 chr3 171069968 171070089 -56454489 - MIR3 SINE MIR -74 134 2 242 307 7 87 chr3 171070160 171070310 -56454268 - MIR SINE MIR -112 150 13 312 306 56 28 chr3 171071020 171071128 -56453450 - MIR SINE MIR -145 117 7 40 67 0 0 chr3 171071390 171071465 -56453113 + AT_rich Low_complexity Low_complexity 1 75 0 2291 92 3 0 chr3 171071501 171071804 -56452774 + AluSp SINE Alu 3 306 -7 22 0 0 0 chr3 171072814 171072836 -56451742 + AT_rich Low_complexity Low_complexity 1 22 0 448 291 123 30 chr3 171072982 171073185 -56451393 + MIR SINE MIR 27 248 -14 219 287 81 0 chr3 171074155 171074242 -56450336 + L2 LINE L2 3219 3312 -1 27 29 0 0 chr3 171074322 171074356 -56450222 + AT_rich Low_complexity Low_complexity 1 34 0 1929 122 66 12 chr3 171075448 171075768 -56448810 - MER1B DNA MER1_type 0 337 1 382 252 175 7 chr3 171076993 171077136 -56447442 - MIR SINE MIR -44 218 52 433 244 188 61 chr3 171077608 171077821 -56446757 + MIR SINE MIR 2 241 -21 205 293 121 35 chr3 171078125 171078241 -56446337 - L2 LINE L2 -859 2455 2330 2168 90 0 68 chr3 171078303 171078624 -56445954 + AluSg SINE Alu 1 299 -11 2124 98 0 4 chr3 171078675 171078951 -56445627 + AluSc SINE Alu 1 275 -34 339 25 0 0 chr3 171078951 171078991 -56445587 + (CA)n Simple_repeat Simple_repeat 2 41 0 2247 85 0 3 chr3 171079041 171079334 -56445244 + AluSc SINE Alu 1 292 -17 593 298 2 4 chr3 171080394 171080556 -56444022 + L1M4 LINE L1 4009 4169 -1977 266 239 86 34 chr3 171080561 171080678 -56443900 + L1M4 LINE L1 4147 4269 -1877 1260 170 10 0 chr3 171080682 171080888 -56443690 + AluJo SINE Alu 5 212 -100 681 224 0 0 chr3 171080896 171081052 -56443526 - L1M4 LINE L1 -3472 4093 3938 * 688 200 41 59 chr3 171081051 171081221 -56443357 - L1M4 LINE L1 -7223 342 176 * 921 213 35 4 chr3 171081218 171081448 -56443130 + L1M4 LINE L1 2748 2984 -3162 6589 153 45 9 chr3 171081457 171081745 -56442833 + L1MA2 LINE L1 3922 4198 -2106 186 43 0 0 chr3 171081745 171081768 -56442810 + (CAAT)n Simple_repeat Simple_repeat 4 26 0 6589 153 45 9 chr3 171081768 171083662 -56440916 + L1MA2 LINE L1 4198 6300 -4 1216 249 36 122 chr3 171083685 171084130 -56440448 + L1MEc LINE L1 396 878 -5518 3074 98 26 4 chr3 171084130 171084587 -56439991 + L1PA11 LINE L1 5707 6173 -1 1216 249 36 122 chr3 171084587 171084832 -56439746 + L1MEc LINE L1 878 1000 -5396 183 80 0 0 chr3 171084832 171084857 -56439721 + (CA)n Simple_repeat Simple_repeat 2 26 0 1216 249 36 122 chr3 171084857 171085025 -56439553 + L1MEc LINE L1 1000 1181 -5215 303 209 139 109 chr3 171085019 171085249 -56439329 + L1MC4 LINE L1 7584 7820 -222 * 2016 146 0 0 chr3 171086646 171086941 -56437637 + AluSx SINE Alu 1 295 -17 481 279 59 39 chr3 171087140 171087394 -56437184 - MER112 DNA MER1_type 0 260 2 28 61 0 0 chr3 171087601 171087650 -56436928 + AT_rich Low_complexity Low_complexity 1 49 0 1821 167 7 7 chr3 171088669 171088969 -56435609 + AluJo SINE Alu 1 300 -12 201 74 0 0 chr3 171090375 171090402 -56434176 + (TGAA)n Simple_repeat Simple_repeat 3 29 0 210 118 0 0 chr3 171090784 171090818 -56433760 + (A)n Simple_repeat Simple_repeat 1 34 0 187 347 82 10 chr3 171091054 171091152 -56433426 - L2 LINE L2 -6 3307 3203 2356 91 0 3 chr3 171091197 171091505 -56433073 + AluSq SINE Alu 1 307 -6 526 240 8 16 chr3 171093752 171093877 -56430701 - MIR SINE MIR -25 237 114 507 263 83 15 chr3 171093994 171094199 -56430379 + Tigger8 DNA MER2_type 328 546 -120 284 347 127 33 chr3 171094529 171094828 -56429750 - L2 LINE L2 -212 3060 2740 21 0 0 0 chr3 171096452 171096473 -56428105 + AT_rich Low_complexity Low_complexity 1 21 0 498 289 53 18 chr3 171096618 171096846 -56427732 + L1MC4a LINE L1 5631 5866 -1942 2247 121 0 0 chr3 171096924 171097229 -56427349 + AluSx SINE Alu 1 305 -7 1376 235 94 24 chr3 171097338 171097751 -56426827 - HsTC2c DNA Tc2 -82 647 206 6545 168 45 22 chr3 171097754 171098645 -56425933 + L1M3f LINE L1 3 952 -4711 2599 17 0 3 chr3 171098645 171098941 -56425637 - AluYa5 SINE Alu -16 295 1 6545 168 45 22 chr3 171098941 171099604 -56424974 + L1M3f LINE L1 952 1598 -4065 297 250 0 0 chr3 171099615 171099707 -56424871 + GA-rich Low_complexity Low_complexity 2 93 0 2440 196 59 46 chr3 171099758 171100700 -56423878 + L1M3f LINE L1 1612 2568 -3760 2357 67 3 3 chr3 171100700 171100999 -56423579 + AluY SINE Alu 1 299 -12 2440 196 59 46 chr3 171100999 171101221 -56423357 + L1M3f LINE L1 2568 2786 -3542 3525 90 2 0 chr3 171101334 171101799 -56422779 + MER41A LTR ERV1 89 554 0 2131 94 17 3 chr3 171101799 171102098 -56422480 + MER41A LTR ERV1 252 554 0 474 205 0 0 chr3 171102098 171102210 -56422368 + L1M3f LINE L1 3198 3309 -3019 1116 166 0 0 chr3 171102261 171102436 -56422142 + AluJo SINE Alu 117 291 -21 222 37 0 0 chr3 171102554 171102581 -56421997 + (TA)n Simple_repeat Simple_repeat 2 28 0 22 56 0 0 chr3 171102886 171102922 -56421656 + AT_rich Low_complexity Low_complexity 1 36 0 1830 142 113 75 chr3 171103414 171103830 -56420748 - MSTB1 LTR MaLR 0 432 1 258 32 0 0 chr3 171103870 171103901 -56420677 + (A)n Simple_repeat Simple_repeat 1 31 0 2208 124 0 0 chr3 171104232 171104530 -56420048 + AluSx SINE Alu 3 300 -12 348 291 78 0 chr3 171105026 171105167 -56419411 - L1ME LINE L1 -578 5588 5437 244 241 53 0 chr3 171105234 171105325 -56419253 + L1M4 LINE L1 5745 5844 -322 236 161 71 36 chr3 171105675 171105731 -56418847 + L1ME LINE L1 5725 5782 -339 5915 143 18 66 chr3 171105989 171107647 -56416931 - L1MA4A LINE L1 -8 6295 4757 1988 112 31 0 chr3 171107647 171107933 -56416645 - AluSx SINE Alu -15 297 3 5915 143 18 66 chr3 171107933 171108198 -56416380 - L1MA4A LINE L1 -1546 4757 4481 2244 132 90 32 chr3 171109645 171110077 -56414501 - MSTB2 LTR MaLR 0 457 1 2247 86 3 7 chr3 171110873 171111165 -56413413 + AluY SINE Alu 1 291 -20 1632 201 3 3 chr3 171111177 171111476 -56413102 + AluJo SINE Alu 1 299 -13 828 251 66 20 chr3 171111988 171112264 -56412314 + L1ME LINE L1 5383 5662 -459 330 250 11 22 chr3 171112305 171112397 -56412181 - L1MC4 LINE L1 -1339 6703 6613 1890 152 20 3 chr3 171112583 171112879 -56411699 - AluJb SINE Alu -11 301 1 25 0 0 0 chr3 171113687 171113712 -56410866 + AT_rich Low_complexity Low_complexity 1 25 0 1977 153 7 3 chr3 171113785 171114092 -56410486 + AluJb SINE Alu 1 308 -4 519 17 0 0 chr3 171114419 171114479 -56410099 + (TC)n Simple_repeat Simple_repeat 1 60 0 518 301 91 41 chr3 171114524 171114943 -56409635 + L1ME4a LINE L1 5458 5897 -224 254 268 0 0 chr3 171114990 171115046 -56409532 + (CATATA)n Simple_repeat Simple_repeat 1 56 0 341 326 33 43 chr3 171115046 171115230 -56409348 + L1ME4a LINE L1 5935 6116 -5 22 0 0 0 chr3 171115406 171115428 -56409150 + AT_rich Low_complexity Low_complexity 1 22 0 22 88 0 0 chr3 171115440 171115497 -56409081 + AT_rich Low_complexity Low_complexity 1 57 0 2096 131 0 0 chr3 171117641 171117938 -56406640 + AluSx SINE Alu 1 297 -15 766 210 99 33 chr3 171118095 171118338 -56406240 - MIR SINE MIR -3 259 1 344 281 89 37 chr3 171118349 171118484 -56406094 - MIR SINE MIR -116 146 5 238 299 155 0 chr3 171118939 171119036 -56405542 - L2 LINE L2 -14 3258 3147 190 71 24 24 chr3 171119163 171119205 -56405373 + (CAAAA)n Simple_repeat Simple_repeat 2 43 0 369 244 201 61 chr3 171119817 171119981 -56404597 - MIR SINE MIR -12 250 64 220 323 0 21 chr3 171120048 171120144 -56404434 + GA-rich Low_complexity Low_complexity 2 95 0 404 174 14 0 chr3 171120672 171120741 -56403837 - Tigger5 DNA MER2_type -7 2316 2247 401 191 0 0 chr3 171120755 171120823 -56403755 + Tigger5 DNA MER2_type 2251 2318 -5 * 430 224 51 20 chr3 171120807 171120905 -56403673 - Tigger5 DNA MER2_type -2222 101 1 2084 125 0 10 chr3 171121315 171121619 -56402959 + AluSq SINE Alu 1 301 -12 1005 147 46 60 chr3 171122901 171123164 -56401414 + L1MB7 LINE L1 5948 6182 -2 3227 168 31 0 chr3 171123221 171123740 -56400838 + MER68 LTR ERV1 2 536 -26 834 209 98 26 chr3 171123964 171124198 -56400380 - MIR SINE MIR 0 262 12 389 305 58 11 chr3 171124490 171124581 -56399997 - L1ME4a LINE L1 -75 6046 5961 1975 166 36 0 chr3 171124581 171124912 -56399666 + MER2 DNA MER2_type 2 344 0 389 305 58 11 chr3 171124912 171125010 -56399568 - L1ME4a LINE L1 -160 5961 5848 224 347 104 12 chr3 171125369 171125542 -56399036 + MIR SINE MIR 49 237 -25 2089 123 0 32 chr3 171125991 171126307 -56398271 + AluSx SINE Alu 1 306 -6 2129 139 45 11 chr3 171128187 171128539 -56396039 + THE1B LTR MaLR 1 364 0 11197 92 7 31 chr3 171128539 171130157 -56394421 + THE1B-int LTR MaLR 1 1580 0 2197 117 79 15 chr3 171130157 171130499 -56394079 + THE1B LTR MaLR 1 364 0 4054 150 66 60 chr3 171130757 171131464 -56393114 - L1MB3 LINE L1 0 6183 5468 188 67 33 0 chr3 171131464 171131494 -56393084 + (TA)n Simple_repeat Simple_repeat 2 32 0 4054 150 66 60 chr3 171131494 171131680 -56392898 - L1MB3 LINE L1 -715 5468 5285 4900 78 52 91 chr3 171131680 171132228 -56392350 + L1PB1 LINE L1 5305 5808 -343 477 34 0 0 chr3 171132228 171132287 -56392291 + (CA)n Simple_repeat Simple_repeat 2 60 0 4900 78 52 91 chr3 171132287 171132619 -56391959 + L1PB1 LINE L1 5808 6151 0 * 7817 212 42 35 chr3 171132617 171133032 -56391546 - L1MB3 LINE L1 -858 5288 4877 2225 169 48 19 chr3 171133032 171133447 -56391131 - MSTB1 LTR MaLR -3 429 3 7817 212 42 35 chr3 171133447 171134583 -56389995 - L1MB3 LINE L1 -1269 4877 3716 1654 110 0 0 chr3 171134583 171134802 -56389776 + AluSg/x SINE Alu 81 299 -11 7817 212 42 35 chr3 171134802 171135343 -56389235 - L1MB3 LINE L1 -2430 3716 3180 240 162 0 0 chr3 171136132 171136169 -56388409 - MSTA LTR MaLR 0 428 392 10563 109 9 33 chr3 171136169 171137786 -56386792 - THE1B-int LTR MaLR -2 1578 1 2408 132 6 6 chr3 171137786 171138150 -56386428 - THE1B LTR MaLR 0 364 1 2056 112 14 0 chr3 171138521 171138808 -56385770 + AluSx SINE Alu 1 291 -21 181 295 0 107 chr3 171138853 171138965 -56385613 - MER5A DNA MER1_type -53 136 37 295 277 0 30 chr3 171139560 171139661 -56384917 - MIR SINE MIR -5 257 160 21 0 0 0 chr3 171139952 171139973 -56384605 + AT_rich Low_complexity Low_complexity 1 21 0 758 162 0 0 chr3 171139974 171140091 -56384487 - FLAM_C SINE Alu -16 117 1 458 280 58 53 chr3 171140191 171140416 -56384162 + L2 LINE L2 3085 3310 -3 1674 152 113 3 chr3 171140522 171140832 -56383746 + MER2 DNA MER2_type 1 344 0 25 0 0 0 chr3 171140836 171140861 -56383717 + AT_rich Low_complexity Low_complexity 1 25 0 1766 178 0 3 chr3 171140861 171141148 -56383430 + AluJb SINE Alu 1 286 -26 551 263 32 4 chr3 171141962 171142147 -56382431 + L1MA10 LINE L1 5988 6327 -6 1974 114 46 0 chr3 171142455 171142736 -56381842 + AluSx SINE Alu 1 294 -18 1364 132 15 10 chr3 171142746 171142951 -56381627 + AluJo SINE Alu 87 292 -20 995 86 0 20 chr3 171142951 171143103 -56381475 + L1PA13 LINE L1 6015 6163 0 1305 175 103 27 chr3 171143392 171143684 -56380894 - MLT1D LTR MaLR -190 315 2 1332 172 55 0 chr3 171143715 171143971 -56380607 - L1MC4 LINE L1 -953 7089 6820 23 0 0 0 chr3 171144097 171144120 -56380458 + AT_rich Low_complexity Low_complexity 1 23 0 684 257 121 6 chr3 171144149 171144487 -56380091 - L1ME4a LINE L1 -206 5915 5539 330 257 112 62 chr3 171144561 171144740 -56379838 - MIR SINE MIR 0 262 75 298 233 0 0 chr3 171144703 171144763 -56379815 + MIR SINE MIR 203 262 0 * 4441 182 46 24 chr3 171145450 171147267 -56377311 + L1MB5 LINE L1 4311 6168 -6 683 203 0 0 chr3 171147567 171147700 -56376878 + FLAM_C SINE Alu 1 133 0 29 28 0 0 chr3 171147908 171147944 -56376634 + AT_rich Low_complexity Low_complexity 1 36 0 224 322 141 16 chr3 171148346 171148467 -56376111 + L2 LINE L2 3136 3271 -1 374 238 123 33 chr3 171148801 171148923 -56375655 - MIR3 SINE MIR -54 154 22 2079 136 7 0 chr3 171148979 171149288 -56375290 - AluSx SINE Alu -1 311 1 350 202 279 10 chr3 171149643 171149747 -56374831 + L2 LINE L2 3179 3310 -3 259 278 83 9 chr3 171150121 171150229 -56374349 - MIR SINE MIR -26 236 121 554 255 48 65 chr3 171151586 171151722 -56372856 + MIR SINE MIR 20 152 -110 1484 196 34 24 chr3 171151722 171152018 -56372560 + AluJb SINE Alu 4 302 -10 554 255 48 65 chr3 171152018 171152112 -56372466 + MIR SINE MIR 152 246 -16 209 173 222 0 chr3 171153129 171153184 -56371394 - MIR SINE MIR -115 93 27 308 260 146 36 chr3 171153208 171153400 -56371178 + MER112 DNA MER1_type 17 229 -31 201 96 96 0 chr3 171153410 171153462 -56371116 + (CACTG)n Simple_repeat Simple_repeat 3 59 0 23 0 0 0 chr3 171155978 171156001 -56368577 + AT_rich Low_complexity Low_complexity 1 23 0 2332 79 3 41 chr3 171156269 171156587 -56367991 + AluSx SINE Alu 1 306 -6 1040 296 94 22 chr3 171156590 171157005 -56367573 - L2 LINE L2 -1541 1773 1329 208 358 15 0 chr3 171156986 171157053 -56367525 - L2 LINE L2 -56 3216 3149 * 1311 195 23 0 chr3 171157218 171157433 -56367145 - MER58A DNA MER1_type -4 220 1 1891 114 92 0 chr3 171157634 171157905 -56366673 - AluSx SINE Alu -16 296 1 850 194 6 44 chr3 171158039 171158219 -56366359 + MER5B DNA MER1_type 1 173 -5 219 36 0 0 chr3 171158403 171158431 -56366147 + (TTG)n Simple_repeat Simple_repeat 2 29 0 851 215 165 32 chr3 171158743 171159022 -56365556 + L1ME3A LINE L1 5850 6165 -5 182 269 151 11 chr3 171160589 171160682 -56363896 - MIR SINE MIR -111 151 46 183 232 89 0 chr3 171161238 171161294 -56363284 - L2 LINE L2 -6 3266 3206 250 341 75 52 chr3 171161946 171162213 -56362365 - L2 LINE L2 -84 3188 2916 460 275 33 0 chr3 171162582 171162702 -56361876 - MIR SINE MIR -65 197 74 448 272 15 37 chr3 171163933 171164069 -56360509 - MIR SINE MIR -19 243 111 21 0 0 0 chr3 171164173 171164194 -56360384 + AT_rich Low_complexity Low_complexity 1 21 0 556 264 79 17 chr3 171164300 171164478 -56360100 + MIR SINE MIR 22 210 -52 555 247 107 35 chr3 171164531 171164991 -56359587 + MLT1H1 LTR MaLR 22 555 0 204 286 127 48 chr3 171165412 171165538 -56359040 - L3b LINE CR1 -1 1582 1447 481 200 9 19 chr3 171165931 171166036 -56358542 - U13 snRNA snRNA 0 104 1 180 77 0 0 chr3 171166061 171166087 -56358491 + (TC)n Simple_repeat Simple_repeat 1 26 0 315 0 0 0 chr3 171166087 171166122 -56358456 + (TG)n Simple_repeat Simple_repeat 2 36 0 649 255 130 14 chr3 171166622 171166830 -56357748 - MIR SINE MIR 0 262 31 709 315 101 47 chr3 171168106 171168818 -56355760 + L2 LINE L2 2545 3311 -2 329 301 26 0 chr3 171169807 171169920 -56354658 + MIR SINE MIR 79 194 -68 1437 45 0 2 chr3 171169924 171170166 -56354412 + AluY SINE Alu 18 306 -5 232 318 0 0 chr3 171170174 171170240 -56354338 + MIR SINE MIR 197 262 0 389 295 36 22 chr3 171170355 171170451 -56354127 + L2 LINE L2 2955 3055 -217 2590 59 0 0 chr3 171170451 171170755 -56353823 + AluY SINE Alu 1 304 -7 389 295 36 22 chr3 171170755 171170797 -56353781 + L2 LINE L2 3055 3095 -177 459 275 23 58 chr3 171171214 171171385 -56353193 + MIR SINE MIR 48 212 -50 390 221 168 0 chr3 171172510 171172605 -56351973 - MIR SINE MIR -106 156 46 211 318 63 48 chr3 171173440 171173566 -56351012 + L2 LINE L2 3185 3312 -1 25 0 0 0 chr3 171173623 171173648 -56350930 + AT_rich Low_complexity Low_complexity 1 25 0 259 255 94 9 chr3 171173659 171173765 -56350813 + L1ME LINE L1 5734 5848 -273 * 7482 34 0 0 chr3 171173745 171174632 -56349946 - L1PA3 LINE L1 -983 5163 4277 7528 47 4 7 chr3 171174633 171175647 -56348931 + L1PA3 LINE L1 5143 6155 0 979 170 38 71 chr3 171175875 171176163 -56348415 + L1ME LINE L1 5243 5520 -642 2284 109 0 0 chr3 171176350 171176643 -56347935 - AluSx SINE Alu -9 303 11 1090 236 97 78 chr3 171176655 171177376 -56347202 - HAL1 LINE L1 -965 1542 808 514 315 5 38 chr3 171178634 171178818 -56345760 + MER5B DNA MER1_type 1 178 0 239 216 20 0 chr3 171179301 171179352 -56345226 - MIR SINE MIR -124 138 87 1620 161 14 27 chr3 171180718 171181010 -56343568 - AluJo SINE Alu -22 290 3 373 217 70 42 chr3 171181066 171181209 -56343369 - LTR33 LTR ERVL -2 519 373 330 288 78 42 chr3 171181270 171181461 -56343117 - LTR33 LTR ERVL -270 251 54 1165 231 4 21 chr3 171181557 171181799 -56342779 - MER8 DNA MER2_type 0 239 2 608 227 184 0 chr3 171182012 171182153 -56342425 + MER5A DNA MER1_type 1 167 -22 232 167 167 56 chr3 171182743 171182815 -56341763 + MIR SINE MIR 64 143 -119 241 267 0 0 chr3 171183102 171183162 -56341416 + L2 LINE L2 3254 3313 0 217 253 92 11 chr3 171183171 171183258 -56341320 + MIR SINE MIR 114 207 -55 513 186 10 0 chr3 171183270 171183372 -56341206 + L1P LINE L1 4935 5037 -1109 534 209 0 75 chr3 171183953 171184057 -56340521 - MLT1F LTR MaLR -2 540 447 2291 107 0 0 chr3 171184057 171184356 -56340222 + AluSg SINE Alu 1 299 -11 534 209 0 75 chr3 171184356 171184385 -56340193 - MLT1F LTR MaLR -95 447 417 198 256 93 0 chr3 171184385 171184428 -56340150 - MIR SINE MIR -168 94 48 259 256 58 0 chr3 171184524 171184610 -56339968 - MER5A DNA MER1_type -84 105 15 1600 180 15 114 chr3 171186024 171186429 -56338149 + MLT1A1 LTR MaLR 1 365 0 274 315 0 0 chr3 171186504 171186593 -56337985 - Charlie7 DNA MER1_type -2523 89 1 543 277 48 11 chr3 171186643 171186831 -56337747 + MIR SINE MIR 68 262 0 843 210 54 116 chr3 171186854 171187301 -56337277 + LTR37B LTR ERV1 4 422 -46 195 354 38 0 chr3 171187889 171187968 -56336610 - MIR SINE MIR -2 260 179 5504 179 22 23 chr3 171187973 171189891 -56334687 - L1MB2 LINE L1 0 6451 4536 207 0 0 0 chr3 171189891 171189914 -56334664 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 5504 179 22 23 chr3 171189914 171190037 -56334541 - L1MB2 LINE L1 -1915 4536 4414 348 281 45 0 chr3 171190040 171190129 -56334449 - MIR SINE MIR -112 150 58 1475 173 47 40 chr3 171190331 171190632 -56333946 - AluJo SINE Alu -5 307 5 190 200 50 0 chr3 171190812 171190852 -56333726 - MIR3 SINE MIR -4 204 163 207 176 0 0 chr3 171190891 171190925 -56333653 + CT-rich Low_complexity Low_complexity 3 36 0 306 0 0 0 chr3 171191095 171191129 -56333449 + (CA)n Simple_repeat Simple_repeat 1 34 0 232 290 7 84 chr3 171191759 171191914 -56332664 - MIR SINE MIR -26 236 94 452 211 21 0 chr3 171193127 171193222 -56331356 - MER20B DNA MER1_type -2 781 685 1728 183 58 23 chr3 171193324 171193723 -56330855 - LTR37A LTR ERV1 0 426 14 1211 314 46 13 chr3 171193737 171194262 -56330316 - MER20B DNA MER1_type -241 542 1 354 212 0 47 chr3 171194706 171194791 -56329787 - Charlie8 DNA MER1_type -2252 165 85 528 286 45 0 chr3 171194934 171195067 -56329511 - MIR SINE MIR -89 173 35 5198 145 80 37 chr3 171196895 171197925 -56326653 - L1MC1 LINE L1 -6 6327 5254 2552 223 98 4 chr3 171197932 171198252 -56326326 - L1MB2 LINE L1 -3099 3327 3038 1986 140 0 104 chr3 171198252 171198638 -56325940 + MER7A DNA MER2_type 3 346 0 2552 223 98 4 chr3 171198638 171199299 -56325279 - L1MB2 LINE L1 -3388 3038 2248 1133 150 0 22 chr3 171199342 171199522 -56325056 - AluJb SINE Alu -15 297 122 1759 143 277 83 chr3 171199527 171199584 -56324994 - L1MCa LINE L1 -4293 2133 2088 2593 63 0 0 chr3 171199584 171199887 -56324691 - AluY SINE Alu -8 303 1 1759 143 277 83 chr3 171199887 171199987 -56324591 - L1MCa LINE L1 -4338 2088 2009 2325 81 3 13 chr3 171199987 171200294 -56324284 + AluSc SINE Alu 1 304 -5 1759 143 277 83 chr3 171200294 171200665 -56323913 - L1MCa LINE L1 -4417 2009 1501 4643 146 31 6 chr3 171200667 171201398 -56323180 + Tigger2 DNA MER2_type 1 750 -1968 1040 121 24 0 chr3 171201463 171201628 -56322950 + Tigger2 DNA MER2_type 2453 2621 -97 257 357 200 7 chr3 171201829 171201969 -56322609 + L2 LINE L2 3102 3268 -4 578 288 119 34 chr3 171202196 171202550 -56322028 + LTR16C LTR ERVL 92 475 -16 1014 215 68 8 chr3 171204040 171204277 -56320301 - MIR SINE MIR -10 252 2 1704 181 69 23 chr3 171204288 171204636 -56319942 + MLT1A2 LTR MaLR 11 374 0 329 340 53 23 chr3 171205136 171205401 -56319177 - L1MC/D LINE L1 -1984 5824 5552 585 278 94 0 chr3 171205475 171205666 -56318912 + LTR67 LTR ERVL 86 294 -263 401 364 122 24 chr3 171205763 171206422 -56318156 + L2 LINE L2 2544 3272 0 193 279 0 0 chr3 171206475 171206518 -56318060 - MIR SINE MIR -130 78 36 638 233 107 7 chr3 171206639 171206789 -56317789 - MER20 DNA MER1_type -48 171 7 183 189 0 0 chr3 171206937 171206974 -56317604 + MIR SINE MIR 103 139 -123 232 56 83 0 chr3 171207098 171207134 -56317444 - L1M1 LINE L1 -471 5832 5794 3327 176 29 7 chr3 171207135 171207920 -56316658 - L1M2 LINE L1 -743 5403 4708 1036 186 125 22 chr3 171207920 171208231 -56316347 - L1MC5 LINE L1 -408 7553 7211 248 304 74 66 chr3 171208241 171208317 -56316261 - LTR41 LTR ERVL -9 764 690 2348 127 21 32 chr3 171208317 171208695 -56315883 + THE1C LTR MaLR 1 374 -1 248 304 74 66 chr3 171208695 171208875 -56315703 - LTR41 LTR ERVL -83 690 506 941 170 16 16 chr3 171209268 171209456 -56315122 - LTR41 LTR ERVL -585 188 1 473 149 32 11 chr3 171209456 171209550 -56315028 - L1MC5 LINE L1 -746 7215 7120 382 214 174 42 chr3 171209840 171209992 -56314586 - MIR SINE MIR -52 210 36 222 62 0 0 chr3 171210464 171210496 -56314082 + (TGGGGG)n Simple_repeat Simple_repeat 1 32 0 189 107 0 0 chr3 171211327 171211355 -56313223 + (A)n Simple_repeat Simple_repeat 1 28 0 24 0 0 0 chr3 171211428 171211452 -56313126 + AT_rich Low_complexity Low_complexity 1 24 0 218 231 39 0 chr3 171211490 171211542 -56313036 + (ATGGTG)n Simple_repeat Simple_repeat 5 58 0 358 199 252 8 chr3 171211658 171211789 -56312789 - MER5A DNA MER1_type 0 189 27 245 264 0 0 chr3 171211832 171211885 -56312693 - MER63 DNA MER1_type -280 781 729 876 78 0 21 chr3 171212302 171212444 -56312134 + (TTCC)n Simple_repeat Simple_repeat 2 140 0 1992 136 0 0 chr3 171212448 171212728 -56311850 - AluSx SINE Alu -32 280 1 205 177 0 48 chr3 171212963 171213025 -56311553 + CT-rich Low_complexity Low_complexity 6 64 0 1260 207 138 52 chr3 171213169 171213627 -56310951 + L1ME3A LINE L1 5669 6165 -5 2112 104 0 10 chr3 171213646 171213934 -56310644 + AluSx SINE Alu 1 285 -27 333 0 0 0 chr3 171213934 171213971 -56310607 + (CA)n Simple_repeat Simple_repeat 2 38 0 190 0 67 0 chr3 171213972 171214002 -56310576 + (CAA)n Simple_repeat Simple_repeat 2 33 0 1701 214 23 6 chr3 171214226 171214572 -56310006 + MLT1A1 LTR MaLR 10 361 -4 313 284 21 21 chr3 171214591 171214686 -56309892 - MIR3 SINE MIR -29 179 85 7546 48 0 12 chr3 171214691 171215688 -56308890 - L1PA6 LINE L1 0 6154 5154 720 293 48 26 chr3 171215954 171216224 -56308354 - MLT1I LTR MaLR -44 365 90 310 105 105 0 chr3 171216335 171216392 -56308186 + L1MB8 LINE L1 6114 6176 -2 23 54 0 0 chr3 171217047 171217084 -56307494 + AT_rich Low_complexity Low_complexity 1 37 0 1672 177 0 62 chr3 171217552 171217874 -56306704 + AluJo SINE Alu 1 302 -10 2462 84 3 0 chr3 171218558 171218890 -56305688 + AluSp SINE Alu 1 333 0 1346 247 64 15 chr3 171219197 171219602 -56304976 + MER113 DNA MER1_type? 83 507 -14 2662 261 74 29 chr3 171219605 171220714 -56303864 + L1ME3 LINE L1 3062 4220 -1926 266 180 49 16 chr3 171220754 171220815 -56303763 + L1ME3 LINE L1 4525 4587 -1559 484 242 40 84 chr3 171221472 171221699 -56302879 - LTR67 LTR ERVL -5 552 336 316 302 41 35 chr3 171221713 171221882 -56302696 - LTR67 LTR ERVL -336 221 52 380 288 24 24 chr3 171221980 171222105 -56302473 + MER5A DNA MER1_type 54 178 -11 359 119 0 34 chr3 171222313 171222372 -56302206 + MSTD LTR MaLR 1 57 -339 1230 224 45 17 chr3 171222484 171222837 -56301741 + L1ME3 LINE L1 4969 5331 -815 950 161 6 25 chr3 171222837 171222998 -56301580 + FRAM SINE Alu 1 152 -24 2655 227 34 13 chr3 171223007 171223623 -56300955 + L1ME3 LINE L1 5318 5946 -216 2890 10 0 0 chr3 171223853 171224164 -56300414 + AluY SINE Alu 1 311 0 1899 158 30 30 chr3 171225099 171225429 -56299149 + MSTD LTR MaLR 67 396 0 202 200 22 0 chr3 171225430 171225475 -56299103 + MIR SINE MIR 112 157 -105 336 279 12 0 chr3 171225481 171225567 -56299011 - MLT1I LTR MaLR 0 409 323 6918 144 21 9 chr3 171225567 171226901 -56297677 - L1MC1 LINE L1 -3 6566 5213 3660 228 28 9 chr3 171227012 171227914 -56296664 - L1MC1 LINE L1 -1729 4653 3735 2041 123 0 0 chr3 171227946 171228231 -56296347 - AluSx SINE Alu -27 285 1 296 200 12 0 chr3 171228264 171228344 -56296234 + (TA)n Simple_repeat Simple_repeat 1 81 0 198 0 0 0 chr3 171228343 171228365 -56296213 + (CA)n Simple_repeat Simple_repeat 2 23 0 * 3237 246 10 8 chr3 171228365 171229272 -56295306 - L1MC1 LINE L1 -2673 3709 2801 2399 190 44 6 chr3 171229269 171229768 -56294810 - L1 LINE L1 -1779 4367 3850 * 2419 188 51 2 chr3 171229767 171230199 -56294379 - L1MC1 LINE L1 -5912 472 20 648 273 21 21 chr3 171230194 171230436 -56294142 - L1 LINE L1 -3633 2513 2272 * 1297 171 92 12 chr3 171230429 171230764 -56293814 + L1MEc LINE L1 2038 2346 -4080 766 167 13 0 chr3 171230898 171231054 -56293524 + L1MEc LINE L1 2293 2450 -3976 665 245 35 10 chr3 171231054 171231254 -56293324 - MLT1A1 LTR MaLR 0 365 161 392 237 74 15 chr3 171231360 171231495 -56293083 - MLT1J2 LTR MaLR -238 212 70 236 255 20 0 chr3 171231541 171231592 -56292986 + MIR SINE MIR 159 210 -52 301 275 114 30 chr3 171232350 171232586 -56291992 - L1ME4a LINE L1 -197 5924 5669 821 221 59 20 chr3 171233598 171233802 -56290776 - MIR SINE MIR -44 218 7 551 352 12 27 chr3 171233869 171234125 -56290453 + MIR SINE MIR 2 253 -9 389 277 141 11 chr3 171235146 171235323 -56289255 - MIR3 SINE MIR -5 203 4 1663 65 5 0 chr3 171235810 171236009 -56288569 - AluY SINE Alu -16 295 96 274 257 77 0 chr3 171236016 171236117 -56288461 - MIR SINE MIR -67 141 22 232 174 0 0 chr3 171236351 171236397 -56288181 - L1ME4a LINE L1 -112 6009 5964 327 302 88 5 chr3 171237076 171237209 -56287369 + MIR SINE MIR 9 147 -63 230 273 18 0 chr3 171237607 171237662 -56286916 + Charlie8 DNA MER1_type 1366 1421 -996 1340 235 38 32 chr3 171238040 171238381 -56286197 + MLT1J LTR MaLR 26 368 -143 892 154 0 0 chr3 171238387 171238517 -56286061 - LTR39 LTR ERV1 0 783 654 199 138 0 0 chr3 171238566 171238595 -56285983 - MIR SINE MIR -67 141 113 415 282 24 32 chr3 171238748 171238872 -56285706 + MER5A DNA MER1_type 63 185 -4 2000 203 48 2 chr3 171239202 171239620 -56284958 - MER110 LTR ERV1 -7 484 48 21 0 0 0 chr3 171239623 171239644 -56284934 + AT_rich Low_complexity Low_complexity 1 21 0 329 290 68 56 chr3 171239777 171239939 -56284639 - MIR SINE MIR -87 175 12 538 227 262 0 chr3 171240745 171240886 -56283692 + MER5B DNA MER1_type 1 178 0 1185 172 0 21 chr3 171240894 171241086 -56283492 + MER5A DNA MER1_type 1 188 -1 3843 128 69 10 chr3 171241487 171242067 -56282511 + LTR18B LTR ERVL 1 614 0 206 316 13 0 chr3 171242521 171242597 -56281981 + L2 LINE L2 1492 1568 -1746 214 254 127 0 chr3 171243407 171243462 -56281116 + L2 LINE L2 3247 3308 -5 1977 183 75 82 chr3 171244420 171245016 -56279562 - LTR38B LTR ERV1 -18 592 1 661 217 60 12 chr3 171245097 171245263 -56279315 + MER5B DNA MER1_type 1 174 -4 655 279 39 45 chr3 171245375 171245683 -56278895 + MER113 DNA MER1_type? 4 309 -212 307 326 67 34 chr3 171245779 171245957 -56278621 + MLT1L LTR MaLR 192 375 -240 287 214 0 0 chr3 171246065 171246121 -56278457 + MLT1L LTR MaLR 552 607 -8 685 219 88 0 chr3 171246124 171246284 -56278294 + MER113 DNA MER1_type? 308 481 -40 435 253 177 32 chr3 171246529 171246687 -56277891 + MER5A DNA MER1_type 9 189 0 485 315 72 30 chr3 171247734 171248132 -56276446 - LTR16B LTR ERVL -27 423 1 344 280 186 5 chr3 171248829 171249022 -56275556 + L1ME4a LINE L1 5602 5829 -292 512 296 39 30 chr3 171249091 171249324 -56275254 + MER112 DNA MER1_type 1 235 -25 263 236 0 0 chr3 171249517 171249572 -56275006 - L3b LINE CR1 -338 1245 1191 277 211 18 18 chr3 171249769 171249826 -56274752 - L2 LINE L2 -9 3304 3248 271 219 62 0 chr3 171250181 171250245 -56274333 + GA-rich Low_complexity Low_complexity 6 73 0 823 104 0 0 chr3 171250309 171250415 -56274163 - MER30 DNA MER1_type 0 230 125 * 1271 91 34 0 chr3 171250412 171250587 -56273991 - MER30 DNA MER1_type -49 181 1 2690 101 8 16 chr3 171251322 171251688 -56272890 + THE1B LTR MaLR 1 363 -1 1724 154 33 7 chr3 171251688 171251960 -56272618 - AluJo SINE Alu -33 279 1 905 214 73 5 chr3 171253105 171253325 -56271253 + MER33 DNA MER1_type 7 241 -83 24 32 0 0 chr3 171253325 171253356 -56271222 + AT_rich Low_complexity Low_complexity 1 31 0 1457 297 126 13 chr3 171253541 171254143 -56270435 + L2 LINE L2 1788 2457 -857 313 357 71 27 chr3 171254311 171254647 -56269931 + HAL1 LINE L1 156 506 -2001 580 269 119 31 chr3 171254741 171255027 -56269551 + HAL1 LINE L1 635 945 -1562 24 0 0 0 chr3 171255077 171255101 -56269477 + AT_rich Low_complexity Low_complexity 1 24 0 636 257 91 24 chr3 171255107 171255352 -56269226 + HAL1 LINE L1 1288 1552 -955 4300 133 51 26 chr3 171255352 171256117 -56268461 + L1MA7 LINE L1 5508 6291 0 547 306 94 52 chr3 171256432 171256857 -56267721 - L2 LINE L2 -864 2450 2008 354 246 173 0 chr3 171256970 171257080 -56267498 - L2 LINE L2 0 3313 3185 323 348 152 3 chr3 171257091 171257413 -56267165 - L2 LINE L2 -1292 2022 1653 953 158 7 0 chr3 171257516 171257693 -56266885 + AluSg/x SINE Alu 137 314 0 2472 134 106 2 chr3 171257693 171258118 -56266460 + L1MA4 LINE L1 5827 6295 -5 362 180 72 27 chr3 171258129 171258240 -56266338 + L1MC5 LINE L1 7544 7659 -302 546 212 143 22 chr3 171258260 171258491 -56266087 + L1MC5 LINE L1 7609 7867 -94 210 37 0 0 chr3 171258528 171258555 -56266023 + (A)n Simple_repeat Simple_repeat 1 27 0 660 294 97 44 chr3 171258629 171258720 -56265858 + L1ME4a LINE L1 5460 5545 -576 2377 66 28 0 chr3 171258720 171259007 -56265571 - AluY SINE Alu -16 295 1 660 294 97 44 chr3 171259007 171259368 -56265210 + L1ME4a LINE L1 5545 5936 -185 211 337 24 0 chr3 171259751 171259834 -56264744 - MIR3 SINE MIR -15 193 109 2422 81 0 37 chr3 171259885 171260208 -56264370 + AluY SINE Alu 1 311 0 315 287 43 26 chr3 171260641 171260756 -56263822 + MIR3 SINE MIR 3 119 -89 510 200 121 7 chr3 171260967 171261107 -56263471 + MER117 DNA MER1_type 1 156 -41 31 0 0 0 chr3 171261793 171261824 -56262754 + AT_rich Low_complexity Low_complexity 1 31 0 509 208 104 0 chr3 171262175 171262300 -56262278 + MIR SINE MIR 123 260 -2 200 324 45 27 chr3 171262481 171262592 -56261986 - MIR SINE MIR -77 131 19 1392 123 127 34 chr3 171264394 171264662 -56259916 + MER44D DNA MER2_type 4 566 -43 233 262 71 40 chr3 171265335 171265461 -56259117 + MIR SINE MIR 19 148 -60 193 324 170 29 chr3 171266308 171266549 -56258029 - L2 LINE L2 -51 3221 2947 511 230 54 51 chr3 171266775 171266991 -56257587 + L1MC4a LINE L1 5714 5828 -477 2320 98 10 0 chr3 171267654 171267959 -56256619 - AluSq SINE Alu -5 308 1 1275 315 44 13 chr3 171268735 171269424 -56255154 - HERV16 LTR ERVL -2883 2113 1346 874 299 64 59 chr3 171269839 171270484 -56254094 - HERV16 LTR ERVL -4348 648 1 887 199 158 38 chr3 171270484 171270776 -56253802 - LTR16C LTR ERVL 0 491 165 448 275 25 53 chr3 171271402 171271595 -56252983 - MIR SINE MIR -46 216 31 283 88 18 18 chr3 171271836 171271893 -56252685 + (CA)n Simple_repeat Simple_repeat 1 57 0 201 267 29 9 chr3 171271896 171272001 -56252577 + (CTCA)n Simple_repeat Simple_repeat 2 108 0 * 391 278 6 6 chr3 171271973 171272050 -56252528 + CT-rich Low_complexity Low_complexity 1 77 -103 183 80 0 0 chr3 171272050 171272075 -56252503 + (CA)n Simple_repeat Simple_repeat 1 25 0 391 278 6 6 chr3 171272075 171272177 -56252401 + CT-rich Low_complexity Low_complexity 76 180 0 410 73 0 15 chr3 171272210 171272278 -56252300 + (CA)n Simple_repeat Simple_repeat 1 67 0 27 29 0 0 chr3 171272760 171272794 -56251784 + AT_rich Low_complexity Low_complexity 1 34 0 275 303 130 40 chr3 171273315 171273639 -56250939 + MARNA DNA Mariner 14 366 -220 2155 126 7 3 chr3 171275012 171275408 -56249170 + AluSx SINE Alu 1 397 0 356 303 28 0 chr3 171275490 171275599 -56248979 + MARNA DNA Mariner 415 526 -60 1616 276 43 39 chr3 171275787 171276348 -56248230 - MLT1E LTR MaLR -16 577 15 265 253 96 0 chr3 171276490 171276573 -56248005 - L2 LINE L2 0 3313 3223 1658 169 10 23 chr3 171278553 171278702 -56245876 + L1MB4 LINE L1 5275 5420 -754 2113 140 0 6 chr3 171278702 171279016 -56245562 + AluSx SINE Alu 1 312 0 1658 169 10 23 chr3 171279016 171279167 -56245411 + L1MB4 LINE L1 5420 5571 -603 1336 136 55 17 chr3 171279167 171279402 -56245176 + AluSg/x SINE Alu 67 310 -2 3101 154 14 38 chr3 171279413 171279484 -56245094 + L1MB4 LINE L1 5609 5680 -500 1724 158 3 40 chr3 171279484 171279782 -56244796 + AluJo SINE Alu 1 288 -24 279 0 0 0 chr3 171279782 171279813 -56244765 + (CAAG)n Simple_repeat Simple_repeat 2 32 0 1724 158 3 40 chr3 171279813 171279836 -56244742 + AluJo SINE Alu 288 310 -2 3101 154 14 38 chr3 171279836 171280340 -56244238 + L1MB4 LINE L1 5680 6170 -10 665 238 128 34 chr3 171280531 171280766 -56243812 + MIR SINE MIR 2 258 -4 1500 214 132 83 chr3 171281187 171281803 -56242775 + MLT1E1 LTR MaLR 1 646 -8 922 285 168 3 chr3 171282061 171282088 -56242490 - MER20B DNA MER1_type -159 624 603 281 47 23 0 chr3 171282088 171282131 -56242447 + (TA)n Simple_repeat Simple_repeat 2 45 0 922 285 168 3 chr3 171282131 171282594 -56241984 - MER20B DNA MER1_type -180 603 19 308 293 79 36 chr3 171284105 171284270 -56240308 + HsTC2 DNA Tc2 7 1896 -2 1156 180 30 30 chr3 171284426 171284659 -56239919 - MLT1A2 LTR MaLR 0 374 142 933 158 19 6 chr3 171284692 171284850 -56239728 - MLT1A2 LTR MaLR -214 160 1 370 349 130 32 chr3 171284905 171285383 -56239195 + L3 LINE CR1 533 1068 -509 790 188 72 90 chr3 171285383 171285606 -56238972 - MER20B DNA MER1_type 0 219 1 370 349 130 32 chr3 171285606 171285651 -56238927 + L3 LINE CR1 1068 1107 -470 253 304 75 28 chr3 171286216 171286430 -56238148 - L1MC5 LINE L1 -31 7930 7707 249 290 0 0 chr3 171286497 171286559 -56238019 + G-rich Low_complexity Low_complexity 2 63 0 631 271 49 13 chr3 171286979 171287204 -56237374 - MIR SINE MIR -25 237 5 372 265 69 0 chr3 171287413 171287515 -56237063 + MIR SINE MIR 13 121 -141 231 258 0 15 chr3 171287852 171287918 -56236660 + MER81 DNA DNA 49 113 -1 368 283 50 25 chr3 171288470 171288629 -56235949 - L1MC4 LINE L1 -132 7910 7748 658 172 40 85 chr3 171288751 171288822 -56235756 - MER110A LTR ERV1 -6 462 389 2022 164 0 0 chr3 171288822 171289132 -56235446 + AluSx SINE Alu 1 310 -2 658 172 40 85 chr3 171289132 171289246 -56235332 - MER110A LTR ERV1 -79 389 281 237 83 0 0 chr3 171289420 171289456 -56235122 + (GGA)n Simple_repeat Simple_repeat 1 36 0 669 257 44 98 chr3 171289685 171290023 -56234555 - MLT1J LTR MaLR -5 506 187 21 0 0 0 chr3 171291237 171291258 -56233320 + AT_rich Low_complexity Low_complexity 1 21 0 242 182 182 0 chr3 171291752 171291807 -56232771 + MLT1L LTR MaLR 1 65 -550 380 287 84 29 chr3 171291852 171292194 -56232384 + MLT1J LTR MaLR 111 510 -1 2433 234 33 13 chr3 171292251 171292795 -56231783 - MLT1H1 LTR MaLR 0 555 1 1133 232 122 50 chr3 171293004 171293539 -56231039 - MER34C LTR ERV1 0 585 13 456 305 66 7 chr3 171293670 171293821 -56230757 + MIR3 SINE MIR 42 201 -7 26 0 0 0 chr3 171294561 171294587 -56229991 + AT_rich Low_complexity Low_complexity 1 26 0 234 329 121 7 chr3 171294905 171295045 -56229533 - MIR SINE MIR 0 262 107 1084 247 53 0 chr3 171295828 171296148 -56228430 - L1M4 LINE L1 -1563 4583 4247 253 216 20 0 chr3 171296370 171296421 -56228157 + Tigger5 DNA MER2_type 28 79 -2244 333 189 0 0 chr3 171296430 171296483 -56228095 + Tigger5 DNA MER2_type 2271 2323 0 1205 175 78 73 chr3 171296507 171297069 -56227509 - LTR34 LTR ERV1 -4 695 1 259 253 30 86 chr3 171298121 171298275 -56226303 + L1MEc LINE L1 791 925 -5471 1776 164 10 23 chr3 171298275 171298585 -56225993 + AluJb SINE Alu 5 310 -2 259 253 30 86 chr3 171298585 171298699 -56225879 + L1MEc LINE L1 925 1044 -5352 824 126 55 0 chr3 171298712 171298839 -56225739 + AluJo SINE Alu 1 134 -178 390 264 93 40 chr3 171298841 171299097 -56225481 + L1MEc LINE L1 941 1182 -5129 2754 133 39 10 chr3 171299097 171299510 -56225068 + MSTB LTR MaLR 2 426 0 390 264 93 40 chr3 171299510 171299708 -56224870 + L1MEc LINE L1 1182 1449 -4862 1267 215 8 0 chr3 171299908 171300145 -56224433 + L1MC1 LINE L1 21 259 -6167 * 6348 181 76 63 chr3 171300144 171300450 -56224128 + L1MC1 LINE L1 777 1078 -5348 1864 150 0 11 chr3 171300450 171300736 -56223842 + AluJb SINE Alu 1 283 -29 6348 181 76 63 chr3 171300736 171302897 -56221681 + L1MC1 LINE L1 1078 3272 -3154 2743 122 12 16 chr3 171302897 171303323 -56221255 + MSTA LTR MaLR 1 360 -4 1004 254 90 18 chr3 171304404 171304738 -56219840 + MLT1I LTR MaLR 8 365 -44 1243 74 0 11 chr3 171305004 171305194 -56219384 + L1P LINE L1 5154 5341 -805 5968 173 40 5 chr3 171305295 171307148 -56217430 + L1MC1 LINE L1 4652 6594 -19 542 251 44 0 chr3 171307164 171307367 -56217211 + L1ME LINE L1 4383 4594 -1552 298 279 85 0 chr3 171307369 171307498 -56217080 + L1ME LINE L1 4637 4776 -1370 4109 153 47 26 chr3 171307505 171309117 -56215461 - L1MA7 LINE L1 0 6291 4560 1028 286 46 4 chr3 171309134 171309938 -56214640 + L1ME LINE L1 4796 5634 -528 425 230 268 21 chr3 171310903 171311142 -56213436 + L2 LINE L2 3013 3310 -3 236 250 88 12 chr3 171312081 171312161 -56212417 - MLT1J2 LTR MaLR -13 437 352 260 221 96 59 chr3 171312316 171312452 -56212126 - MLT1J2 LTR MaLR -309 141 1 269 146 36 146 chr3 171312790 171312900 -56211678 + MLT1J1 LTR MaLR 43 140 -306 1686 84 0 0 chr3 171312941 171313156 -56211422 + AluSx SINE Alu 5 219 -93 230 83 0 0 chr3 171313380 171313416 -56211162 + Alu SINE Alu 182 217 -83 884 103 0 0 chr3 171313432 171313558 -56211020 + AluSg/x SINE Alu 184 309 -3 237 301 0 14 chr3 171314511 171314584 -56209994 + MER5A DNA MER1_type 96 167 -22 25 0 0 0 chr3 171315546 171315571 -56209007 + AT_rich Low_complexity Low_complexity 1 25 0 279 321 28 28 chr3 171315644 171315750 -56208828 - MIR3 SINE MIR -6 202 97 1112 290 55 18 chr3 171315791 171316188 -56208390 + LTR16A LTR ERVL 25 436 -14 432 250 45 0 chr3 171316953 171317065 -56207513 + MIR SINE MIR 76 192 -70 399 241 103 9 chr3 171318233 171318349 -56206229 - MIR SINE MIR -6 256 130 276 376 50 17 chr3 171318395 171318576 -56206002 + MIR3 SINE MIR 13 199 -9 253 157 14 57 chr3 171318743 171318813 -56205765 - L1MA4A LINE L1 -193 6110 6044 5743 103 7 24 chr3 171318813 171319960 -56204618 - L1PB1 LINE L1 -3 6148 4996 334 330 9 0 chr3 171320499 171320611 -56203967 - MIR3 SINE MIR -9 199 87 1256 185 20 118 chr3 171321587 171321992 -56202586 - MLT1A1 LTR MaLR 0 365 1 229 299 39 26 chr3 171322602 171322679 -56201899 + L2 LINE L2 2588 2665 -649 248 350 138 39 chr3 171322709 171323092 -56201486 + L2 LINE L2 2851 3271 -1 24 0 0 0 chr3 171323867 171323891 -56200687 + AT_rich Low_complexity Low_complexity 1 24 0 561 27 0 27 chr3 171324275 171324350 -56200228 - L1PA6 LINE L1 -3 6151 6079 769 89 0 0 chr3 171324350 171324462 -56200116 + L1PA7 LINE L1 5797 5908 -246 782 164 4 148 chr3 171324743 171324987 -56199591 - MER3 DNA MER1_type 0 209 1 437 233 143 15 chr3 171325175 171325308 -56199270 - MIR SINE MIR 0 262 113 657 224 149 11 chr3 171325354 171325528 -56199050 + MIR SINE MIR 21 218 -44 194 222 204 0 chr3 171325557 171325611 -56198967 - MIR SINE MIR -124 138 74 217 284 0 45 chr3 171325830 171325897 -56198681 + MIR3 SINE MIR 136 199 -9 222 128 0 0 chr3 171325977 171326016 -56198562 + (T)n Simple_repeat Simple_repeat 1 39 0 548 226 0 19 chr3 171327049 171327155 -56197423 - MER5A DNA MER1_type -76 113 10 2436 192 10 6 chr3 171327287 171327798 -56196780 + L1MB8 LINE L1 5519 6031 -147 2438 208 53 24 chr3 171378026 171378575 -56146003 - MLT1F1 LTR MaLR 0 567 3 2289 217 35 62 chr3 171378602 171379207 -56145371 + L1MC4a LINE L1 7086 7669 -139 1700 184 0 16 chr3 171379207 171379511 -56145067 - AluJb SINE Alu -13 299 1 2289 217 35 62 chr3 171379511 171379648 -56144930 + L1MC4a LINE L1 7669 7808 0 1973 118 29 0 chr3 171379701 171379981 -56144597 + AluSx SINE Alu 1 288 -24 275 308 133 0 chr3 171380105 171380225 -56144353 + L2 LINE L2 2638 2773 -541 244 183 28 84 chr3 171380291 171380362 -56144216 + L2 LINE L2 2897 2963 -309 1763 224 39 34 chr3 171380665 171381202 -56143376 - MLT1F LTR MaLR -2 540 1 2852 13 0 0 chr3 171381335 171381648 -56142930 + AluYb8 SINE Alu 1 313 -5 2413 88 0 13 chr3 171382389 171382697 -56141881 - AluSp SINE Alu -9 304 1 23 0 0 0 chr3 171382922 171382945 -56141633 + AT_rich Low_complexity Low_complexity 1 23 0 411 273 106 15 chr3 171383567 171383699 -56140879 + MIR SINE MIR 56 199 -63 650 215 169 32 chr3 171383724 171383943 -56140635 + MIR SINE MIR 2 250 -12 502 320 167 22 chr3 171384012 171384234 -56140344 + MIR SINE MIR 1 254 -8 241 306 56 49 chr3 171385657 171385801 -56138777 - L2 LINE L2 -40 3232 3088 731 199 106 18 chr3 171385903 171386129 -56138449 + MER5C DNA MER1_type 78 323 -1 268 200 20 0 chr3 171386183 171386233 -56138345 + MER81 DNA DNA 64 114 0 330 303 23 30 chr3 171386267 171386399 -56138179 + HAL1 LINE L1 1248 1378 -1129 301 247 114 12 chr3 171387609 171387775 -56136803 + L1ME4a LINE L1 5936 6118 -3 356 248 238 24 chr3 171387895 171388101 -56136477 + MIR SINE MIR 3 252 -10 237 261 43 0 chr3 171389829 171389898 -56134680 - MIR3 SINE MIR -3 205 134 345 303 124 14 chr3 171389978 171390123 -56134455 + MIR SINE MIR 13 173 -89 352 308 18 41 chr3 171390250 171390419 -56134159 + MIR SINE MIR 74 238 -24 223 286 54 0 chr3 171391019 171391075 -56133503 + L2 LINE L2 2996 3054 -218 388 310 98 11 chr3 171391250 171391424 -56133154 - L2 LINE L2 -27 3286 3098 2290 118 74 48 chr3 171391711 171392077 -56132501 + MSTA LTR MaLR 1 381 -47 1831 141 27 34 chr3 171392077 171392374 -56132204 - AluSx SINE Alu -12 300 6 2290 118 74 48 chr3 171392374 171392424 -56132154 + MSTA LTR MaLR 381 428 0 1035 183 0 0 chr3 171392476 171392645 -56131933 - FAM SINE Alu -6 169 1 299 218 119 10 chr3 171392768 171392869 -56131709 - MER103 DNA DNA -47 119 8 23 33 0 0 chr3 171393197 171393227 -56131351 + AT_rich Low_complexity Low_complexity 1 30 0 22 70 0 0 chr3 171393431 171393474 -56131104 + AT_rich Low_complexity Low_complexity 1 43 0 2058 144 3 0 chr3 171393652 171393958 -56130620 + AluSq SINE Alu 1 307 -6 1499 213 57 40 chr3 171394693 171395249 -56129329 + L1ME3A LINE L1 4884 5475 -689 2048 126 3 3 chr3 171395304 171395618 -56128960 + AluSq SINE Alu 1 314 0 1984 224 48 42 chr3 171395750 171396077 -56128501 + L1ME3A LINE L1 5494 5818 -352 2000 155 0 10 chr3 171396077 171396386 -56128192 + AluSx SINE Alu 1 306 -6 1984 224 48 42 chr3 171396386 171396722 -56127856 + L1ME3A LINE L1 5818 6161 -9 1541 145 0 0 chr3 171397270 171397497 -56127081 + AluJb SINE Alu 86 312 0 239 125 0 56 chr3 171397529 171397601 -56126977 + (TTCTC)n Simple_repeat Simple_repeat 4 71 0 273 247 34 34 chr3 171399009 171399155 -56125423 - L1MC5 LINE L1 -13 7948 7803 26 0 0 0 chr3 171399178 171399204 -56125374 + AT_rich Low_complexity Low_complexity 1 26 0 2235 110 3 3 chr3 171399212 171399512 -56125066 + AluSg SINE Alu 1 300 -10 2369 80 23 0 chr3 171399734 171400035 -56124543 + AluSp SINE Alu 1 308 -5 328 241 48 96 chr3 171400493 171400616 -56123962 - MER5B DNA MER1_type 0 178 65 2210 81 3 24 chr3 171400616 171400911 -56123667 - AluSq SINE Alu -8 305 17 328 241 48 96 chr3 171400911 171400974 -56123604 - MER5B DNA MER1_type -113 65 1 27 29 0 0 chr3 171403044 171403078 -56121500 + AT_rich Low_complexity Low_complexity 1 34 0 195 229 267 9 chr3 171403942 171404047 -56120531 - MIR SINE MIR -6 256 125 306 278 12 18 chr3 171404218 171404415 -56120163 + C-rich Low_complexity Low_complexity 1 195 0 224 109 0 22 chr3 171404591 171404637 -56119941 + (CCCCCA)n Simple_repeat Simple_repeat 1 45 0 612 238 36 0 chr3 171405247 171405415 -56119163 + L1MEc LINE L1 1882 2055 -4341 559 252 13 7 chr3 171405415 171405566 -56119012 + L1MEc LINE L1 39 190 -6206 * 1396 194 70 72 chr3 171405559 171406070 -56118508 + L1ME1 LINE L1 5649 6158 -8 321 201 91 115 chr3 171406156 171406365 -56118213 + HAL1 LINE L1 2285 2488 -19 944 266 25 30 chr3 171406437 171406798 -56117780 - LTR16B LTR ERVL -72 392 34 2484 53 0 34 chr3 171406798 171407118 -56117460 - AluY SINE Alu -2 309 1 244 136 34 17 chr3 171407666 171407725 -56116853 + (TA)n Simple_repeat Simple_repeat 2 61 0 250 261 14 0 chr3 171407742 171407811 -56116767 - MER69 DNA AcHobo -1 2525 2456 751 204 10 75 chr3 171407820 171408021 -56116557 - MER69 DNA AcHobo -979 247 60 2166 175 88 29 chr3 171408822 171409313 -56115265 - MLT1F LTR MaLR 0 542 23 817 156 0 0 chr3 171409846 171409968 -56114610 + FLAM_C SINE Alu 3 124 -19 320 197 66 0 chr3 171410267 171410343 -56114235 + L2 LINE L2 3191 3271 -1 2369 93 3 0 chr3 171410983 171411293 -56113285 - AluSq SINE Alu -2 311 1 22 56 0 0 chr3 171411929 171411965 -56112613 + AT_rich Low_complexity Low_complexity 1 36 0 210 37 0 0 chr3 171414632 171414659 -56109919 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 389 275 123 29 chr3 171415201 171415372 -56109206 + MIR SINE MIR 76 262 0 21 0 0 0 chr3 171416491 171416512 -56108066 + AT_rich Low_complexity Low_complexity 1 21 0 2122 109 46 0 chr3 171417175 171417458 -56107120 - AluSx SINE Alu -15 297 2 381 170 37 33 chr3 171419018 171419136 -56105442 + MLT1A2 LTR MaLR 52 163 -211 1085 166 88 14 chr3 171419405 171419701 -56104877 - MER33 DNA MER1_type -5 319 2 224 275 78 56 chr3 171420622 171420764 -56103814 - L2 LINE L2 -10 3303 3159 1392 171 31 73 chr3 171420827 171421212 -56103366 - MLT1A2 LTR MaLR -5 369 1 287 273 101 48 chr3 171421430 171421657 -56102921 + L2 LINE L2 2259 2497 -817 454 276 245 0 chr3 171421721 171421917 -56102661 - MIR SINE MIR 0 262 19 354 369 57 19 chr3 171421950 171422300 -56102278 + L2 LINE L2 2633 2992 -321 2027 123 20 0 chr3 171422321 171422621 -56101957 - AluSq SINE Alu -7 306 1 236 380 93 7 chr3 171422974 171423124 -56101454 + L2 LINE L2 3102 3264 -8 21 36 0 0 chr3 171423187 171423215 -56101363 + AT_rich Low_complexity Low_complexity 1 28 0 534 316 73 32 chr3 171423252 171423568 -56101010 - MER115 DNA AcHobo 0 693 365 465 253 133 35 chr3 171423736 171424021 -56100557 + L1ME4a LINE L1 5805 6117 -4 219 36 0 0 chr3 171424812 171424840 -56099738 + (TG)n Simple_repeat Simple_repeat 1 28 0 2038 102 0 48 chr3 171424840 171425133 -56099445 - AluSx SINE Alu -33 279 1 520 305 48 82 chr3 171425980 171426517 -56098061 - L1M4 LINE L1 -1444 4702 4184 482 224 13 129 chr3 171426570 171426802 -56097776 - MER63A DNA MER1_type -5 205 1 2005 116 58 0 chr3 171426846 171427139 -56097439 + AluSx SINE Alu 1 310 -2 2358 146 62 0 chr3 171427318 171427757 -56096821 + L1MB7 LINE L1 5404 5869 -315 1328 136 20 12 chr3 171427758 171428008 -56096570 + L1MB7 LINE L1 5926 6177 -7 55 56 0 0 chr3 171428113 171428203 -56096375 + AT_rich Low_complexity Low_complexity 1 90 0 2124 139 10 0 chr3 171428208 171428510 -56096068 + AluSx SINE Alu 1 305 -7 216 320 103 26 chr3 171428557 171428713 -56095865 - L3b LINE CR1 -219 1364 1197 370 257 114 23 chr3 171428714 171428889 -56095689 + L2 LINE L2 3123 3313 0 783 164 15 0 chr3 171429758 171429892 -56094686 - BC200 scRNA scRNA -61 139 4 280 132 75 0 chr3 171430047 171430153 -56094425 + (TA)n Simple_repeat Simple_repeat 1 114 0 1920 157 13 0 chr3 171430216 171430516 -56094062 - AluSx SINE Alu -8 304 1 314 215 9 122 chr3 171430550 171430657 -56093921 - L1ME3 LINE L1 -107 6055 5961 1143 274 105 16 chr3 171430719 171431215 -56093363 - L1ME3 LINE L1 -214 5956 5417 3260 201 42 21 chr3 171432582 171433388 -56091190 - L1ME1 LINE L1 -50 6116 5328 1957 132 54 0 chr3 171433388 171433683 -56090895 - AluSx SINE Alu -1 311 1 189 0 0 0 chr3 171433688 171433709 -56090869 + (TTG)n Simple_repeat Simple_repeat 1 21 0 3260 201 42 21 chr3 171433709 171434011 -56090567 - L1ME1 LINE L1 -841 5325 4985 186 244 22 0 chr3 171434536 171434581 -56089997 - MIR3 SINE MIR -23 185 140 2406 121 23 5 chr3 171435788 171436178 -56088400 + L1MB7 LINE L1 5687 6083 -101 184 291 55 0 chr3 171436613 171436668 -56087910 + L2 LINE L2 3236 3293 -20 332 232 20 10 chr3 171437657 171437756 -56086822 - L1ME4a LINE L1 -66 6055 5956 183 186 0 0 chr3 171438131 171438174 -56086404 + T-rich Low_complexity Low_complexity 1 43 0 650 259 29 29 chr3 171438713 171438918 -56085660 + MIR SINE MIR 58 262 0 739 201 0 8 chr3 171439843 171439977 -56084601 + FLAM_A SINE Alu 1 133 0 24 0 0 0 chr3 171440848 171440872 -56083706 + AT_rich Low_complexity Low_complexity 1 24 0 419 269 106 62 chr3 171440909 171441069 -56083509 - MER91A DNA MER1_type -28 168 2 254 214 163 0 chr3 171441468 171441566 -56083012 + L1ME LINE L1 5616 5729 -392 569 321 91 48 chr3 171441984 171442567 -56082011 - L1ME4a LINE L1 -38 6083 5476 565 258 40 0 chr3 171442699 171442850 -56081728 - MIR SINE MIR 0 262 106 188 256 0 12 chr3 171443147 171443229 -56081349 + (TATATG)n Simple_repeat Simple_repeat 3 83 0 826 223 86 146 chr3 171443750 171444216 -56080362 - HAL1 LINE L1 -149 2358 1954 904 211 12 6 chr3 171444216 171444382 -56080196 - FAM SINE Alu -5 170 4 826 223 86 146 chr3 171444382 171444682 -56079896 - HAL1 LINE L1 -553 1954 1638 465 243 9 54 chr3 171445524 171445635 -56078943 - L2 LINE L2 0 3272 3167 247 200 67 27 chr3 171445672 171445747 -56078831 + MIR SINE MIR 91 168 -94 218 391 52 9 chr3 171445814 171445929 -56078649 + L2 LINE L2 3143 3262 -10 498 250 128 20 chr3 171446565 171446713 -56077865 - MIR3 SINE MIR -3 205 42 817 149 0 56 chr3 171447117 171447278 -56077300 + AluJo SINE Alu 16 167 -145 438 309 89 12 chr3 171447500 171447668 -56076910 + MIR SINE MIR 63 243 -19 217 288 108 18 chr3 171448385 171448496 -56076082 - MIR SINE MIR -64 198 78 2397 90 0 0 chr3 171450003 171450303 -56074275 + AluSp SINE Alu 1 300 -13 1453 259 148 16 chr3 171450435 171450947 -56073631 - L2 LINE L2 -3 3310 2728 441 279 85 56 chr3 171450992 171451449 -56073129 - LTR33 LTR ERVL -13 508 1 458 249 106 42 chr3 171451543 171451732 -56072846 - MIR3 SINE MIR 0 208 8 25 31 0 0 chr3 171452032 171452064 -56072514 + AT_rich Low_complexity Low_complexity 1 32 0 343 299 90 0 chr3 171452064 171452208 -56072370 - L1ME4a LINE L1 -14 6107 5951 24 85 0 0 chr3 171452224 171452283 -56072295 + AT_rich Low_complexity Low_complexity 1 59 0 1607 112 0 5 chr3 171452346 171452560 -56072018 + AluSg/x SINE Alu 68 280 -32 243 0 0 0 chr3 171452564 171452591 -56071987 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 2273 101 0 3 chr3 171452820 171453117 -56071461 - AluSq SINE Alu -17 296 1 483 233 159 34 chr3 171454153 171454329 -56070249 + L2 LINE L2 2695 2892 -422 551 297 68 51 chr3 171454389 171454651 -56069927 + L2 LINE L2 3015 3284 -29 2079 129 0 0 chr3 171454651 171454930 -56069648 - AluSx SINE Alu -33 279 1 551 297 68 51 chr3 171454930 171454960 -56069618 + L2 LINE L2 3284 3312 -1 30 0 0 0 chr3 171458162 171458192 -56066386 + AT_rich Low_complexity Low_complexity 1 30 0 242 125 0 83 chr3 171458314 171458386 -56066192 + (CGG)n Simple_repeat Simple_repeat 1 66 0 339 278 122 85 chr3 171458513 171458974 -56065604 + L1M2 LINE L1 569 1046 -5803 449 282 102 124 chr3 171460143 171461037 -56063541 + L1M2 LINE L1 534 1407 -5442 26 0 0 0 chr3 171462327 171462353 -56062225 + AT_rich Low_complexity Low_complexity 1 26 0 1544 198 3 7 chr3 171465596 171465894 -56058684 + AluJo SINE Alu 1 297 -15 333 237 209 17 chr3 171467574 171467751 -56056827 + MIR SINE MIR 25 235 -27 258 313 12 0 chr3 171467943 171468023 -56056555 + MIR SINE MIR 36 116 -92 321 318 149 15 chr3 171468688 171468883 -56055695 - MIR SINE MIR -24 238 18 2227 104 0 3 chr3 171470384 171470682 -56053896 + AluSq SINE Alu 2 298 -15 839 214 155 5 chr3 171471509 171471715 -56052863 + MIR SINE MIR 4 240 -22 23 0 0 0 chr3 171473781 171473804 -56050774 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 171474662 171474683 -56049895 + AT_rich Low_complexity Low_complexity 1 21 0 2123 106 32 0 chr3 171474828 171475111 -56049467 + AluSq SINE Alu 3 294 -19 570 223 184 5 chr3 171476781 171477057 -56047521 - L1ME3A LINE L1 0 6164 5827 310 160 13 13 chr3 171477342 171477417 -56047161 + CT-rich Low_complexity Low_complexity 3 77 0 1378 175 22 22 chr3 171477424 171477692 -56046886 - L1MD3 LINE L1 -11 7984 7717 228 227 93 41 chr3 171477985 171478082 -56046496 + L3 LINE CR1 644 745 -832 185 308 19 0 chr3 171478226 171478278 -56046300 + L3 LINE CR1 936 988 -589 311 289 22 67 chr3 171479714 171479849 -56044729 - L2 LINE L2 -207 3065 2937 914 230 91 38 chr3 171480481 171480619 -56043959 - L1MC4 LINE L1 -2 8040 7911 1744 69 5 0 chr3 171480619 171480835 -56043743 + AluY SINE Alu 92 308 -3 914 230 91 38 chr3 171480835 171481077 -56043501 - L1MC4 LINE L1 -131 7911 7555 32 0 0 0 chr3 171481144 171481176 -56043402 + AT_rich Low_complexity Low_complexity 1 32 0 226 125 104 0 chr3 171481973 171482021 -56042557 + AluSc SINE Alu 234 286 -13 1902 152 24 3 chr3 171482089 171482386 -56042192 - AluSx SINE Alu -9 303 1 260 161 0 18 chr3 171482752 171482808 -56041770 + L1MCa LINE L1 2010 2064 -4362 2145 108 3 13 chr3 171482917 171483224 -56041354 - AluSx SINE Alu -8 304 1 2177 98 3 26 chr3 171485464 171485793 -56038785 + AluSg SINE Alu 1 310 0 712 292 11 11 chr3 171487926 171488111 -56036467 - MIR SINE MIR -27 235 51 213 156 22 0 chr3 171488979 171489024 -56035554 + (TA)n Simple_repeat Simple_repeat 1 46 0 220 356 20 0 chr3 171489308 171489409 -56035169 + L2 LINE L2 2014 2116 -1198 1807 155 22 0 chr3 171489420 171489698 -56034880 + AluJb SINE Alu 1 284 -28 203 333 189 37 chr3 171490052 171490295 -56034283 + L2 LINE L2 2937 3216 -56 1301 177 104 15 chr3 171490629 171490889 -56033689 + AluJo SINE Alu 6 288 -24 195 283 65 0 chr3 171490896 171490942 -56033636 - MIR SINE MIR -194 68 20 531 234 57 0 chr3 171490982 171491106 -56033472 - L3 LINE CR1 -4 1573 1443 738 91 0 0 chr3 171493160 171493303 -56031275 + AluSp/q SINE Alu 188 330 0 506 256 46 62 chr3 171493629 171493771 -56030807 - MIR SINE MIR -70 192 52 2275 94 0 0 chr3 171493771 171494057 -56030521 + AluSg SINE Alu 16 301 -9 506 256 46 62 chr3 171494057 171494109 -56030469 - MIR SINE MIR -210 52 1 815 160 8 0 chr3 171494310 171494441 -56030137 + FLAM_C SINE Alu 1 132 -11 181 356 122 26 chr3 171495226 171495456 -56029122 + L2 LINE L2 2100 2351 -963 1436 179 11 29 chr3 171496158 171496432 -56028146 + AluJo SINE Alu 22 290 -22 180 0 0 0 chr3 171496820 171496840 -56027738 + (TA)n Simple_repeat Simple_repeat 1 20 0 259 150 0 67 chr3 171497523 171497583 -56026995 - L1ME LINE L1 -302 5819 5764 345 246 55 18 chr3 171497589 171497699 -56026879 - L1ME LINE L1 -2085 5723 5610 259 205 12 24 chr3 171497750 171497833 -56026745 - L1P5 LINE L1 -702 5454 5373 24 0 0 0 chr3 171499166 171499190 -56025388 + AT_rich Low_complexity Low_complexity 1 24 0 326 237 280 0 chr3 171499747 171499865 -56024713 + MIR SINE MIR 46 196 -66 545 253 151 0 chr3 171499996 171500182 -56024396 - AluJo SINE Alu -13 299 86 2289 88 3 0 chr3 171500283 171500577 -56024001 + AluSp SINE Alu 1 295 -18 184 250 42 83 chr3 171500635 171500731 -56023847 - L2 LINE L2 -1878 1436 1345 780 161 19 122 chr3 171501607 171501812 -56022766 - MER5A DNA MER1_type 0 189 6 182 194 83 0 chr3 171501893 171501929 -56022649 - MIR SINE MIR -7 255 217 544 238 200 0 chr3 171502037 171502197 -56022381 - MIR SINE MIR -16 246 55 243 341 55 43 chr3 171502231 171502395 -56022183 - L2 LINE L2 -173 3099 2934 954 165 57 6 chr3 171502602 171502778 -56021800 + MER5A DNA MER1_type 1 185 -4 330 272 40 32 chr3 171503654 171503779 -56020799 - MIR3 SINE MIR -15 193 68 2309 89 10 10 chr3 171504295 171504608 -56019970 - AluSq SINE Alu 0 313 1 231 258 0 45 chr3 171504976 171505042 -56019536 - MIR3 SINE MIR -17 191 129 767 148 33 0 chr3 171505634 171505756 -56018822 + FLAM_C SINE Alu 1 126 -7 2043 125 7 0 chr3 171505763 171506042 -56018536 - AluSx SINE Alu -16 296 16 237 119 0 0 chr3 171507680 171507722 -56016856 + (T)n Simple_repeat Simple_repeat 1 42 0 180 0 0 0 chr3 171507947 171507967 -56016611 + (A)n Simple_repeat Simple_repeat 1 20 0 250 292 200 8 chr3 171510256 171510376 -56014202 - L2 LINE L2 -218 3054 2912 2436 73 10 16 chr3 171510745 171511059 -56013519 - AluSx SINE Alu 0 312 1 24 0 0 0 chr3 171512531 171512555 -56012023 + AT_rich Low_complexity Low_complexity 1 24 0 320 290 167 12 chr3 171513158 171513320 -56011258 + L1MC/D LINE L1 4816 5002 -1144 482 285 85 22 chr3 171513430 171513742 -56010836 + L1MC/D LINE L1 5379 5718 -452 923 238 28 6 chr3 171513742 171514008 -56010570 + Tigger7 DNA MER2_type 1 222 -483 505 189 32 0 chr3 171514011 171514106 -56010472 + Tigger7 DNA MER2_type 2394 2491 0 241 246 152 0 chr3 171514106 171514244 -56010334 + L1MC/D LINE L1 5715 5873 -1935 324 0 0 0 chr3 171514311 171514347 -56010231 + (CA)n Simple_repeat Simple_repeat 1 36 0 25 31 0 0 chr3 171514514 171514546 -56010032 + AT_rich Low_complexity Low_complexity 1 32 0 370 266 0 0 chr3 171514832 171514911 -56009667 + L2 LINE L2 1845 1923 -1391 261 149 21 0 chr3 171515057 171515104 -56009474 - LTR54 LTR ERV1 -61 449 402 829 172 0 0 chr3 171515107 171515229 -56009349 - FLAM_A SINE Alu -12 130 9 484 213 39 16 chr3 171515553 171515680 -56008898 - L1MC5 LINE L1 -54 7907 7778 2156 196 121 21 chr3 171515861 171516579 -56007999 - L1MC5 LINE L1 -178 7783 6994 2248 96 3 3 chr3 171517068 171517370 -56007208 - AluSp SINE Alu -11 302 1 256 342 13 13 chr3 171518301 171518377 -56006201 + L2 LINE L2 3145 3220 -52 6406 103 49 22 chr3 171518377 171518854 -56005724 - Tigger3b DNA MER2_type -1797 1231 768 2316 78 0 10 chr3 171518854 171519149 -56005429 - AluY SINE Alu -19 292 1 1753 163 37 7 chr3 171519149 171519443 -56005135 - AluJb SINE Alu -9 303 1 6406 103 49 22 chr3 171519443 171520095 -56004483 - Tigger3b DNA MER2_type -2259 769 1 320 333 48 0 chr3 171520134 171520281 -56004297 + MIR SINE MIR 100 253 -9 698 164 0 0 chr3 171520496 171520606 -56003972 - AluJb SINE Alu -6 306 197 348 261 41 72 chr3 171520619 171520814 -56003764 - MIR SINE MIR -66 196 8 2044 120 3 0 chr3 171521112 171521396 -56003182 + AluSx SINE Alu 1 285 -27 5436 117 12 30 chr3 171521816 171523237 -56001341 - L1PA16 LINE L1 -4 6162 4744 3176 198 11 6 chr3 171523240 171523943 -56000635 + L1 LINE L1 4003 4709 -1437 22 35 0 0 chr3 171524041 171524070 -56000508 + AT_rich Low_complexity Low_complexity 1 29 0 3084 138 21 35 chr3 171524127 171524927 -55999651 + pTR5 LTR ERV1 6 2025 -413 280 224 31 20 chr3 171524927 171525025 -55999553 + LTR30 LTR ERV1 544 642 -80 675 113 0 0 chr3 171525028 171525125 -55999453 + pTR5 LTR ERV1 303 399 -2039 1022 287 112 5 chr3 171525254 171525693 -55998885 + LTR33A LTR ERVL 38 523 0 446 259 99 12 chr3 171527063 171527225 -55997353 + MER69A DNA AcHobo 2 177 0 282 279 25 25 chr3 171527939 171528018 -55996560 + L2 LINE L2 3233 3311 -2 2012 89 0 66 chr3 171528943 171529245 -55995333 - AluY SINE Alu -13 298 17 2298 126 0 0 chr3 171530734 171531043 -55993535 + AluSx SINE Alu 1 309 -3 3342 139 79 59 chr3 171531053 171531816 -55992762 + L1MB7 LINE L1 5395 6172 -12 378 200 40 23 chr3 171531816 171531991 -55992587 + GA-rich Low_complexity Low_complexity 3 180 0 447 221 47 31 chr3 171532728 171532855 -55991723 - MIR SINE MIR -48 214 86 466 263 66 20 chr3 171532895 171533047 -55991531 - MIR SINE MIR 0 262 104 506 173 29 0 chr3 171533049 171533153 -55991425 + L1MA5 LINE L1 6189 6295 -5 292 238 100 25 chr3 171533280 171533360 -55991218 + MLT1J LTR MaLR 233 318 -193 615 268 124 44 chr3 171533519 171533930 -55990648 + MLT1J LTR MaLR 36 479 -32 384 258 56 0 chr3 171534037 171534126 -55990452 - MER102b DNA MER1_type -2 339 246 927 277 79 20 chr3 171534134 171534477 -55990101 + MLT1J2 LTR MaLR 15 377 -73 315 250 176 37 chr3 171534564 171534700 -55989878 - MER102b DNA MER1_type -154 187 33 233 138 19 46 chr3 171535351 171535422 -55989156 + T-rich Low_complexity Low_complexity 1 69 0 745 244 32 76 chr3 171535538 171535603 -55988975 + MIR SINE MIR 18 84 -178 2108 108 0 29 chr3 171535603 171535909 -55988669 - AluSx SINE Alu -15 297 1 745 244 32 76 chr3 171535909 171535987 -55988591 + MIR SINE MIR 84 164 -98 1039 173 123 60 chr3 171535987 171536352 -55988226 - MLT1B LTR MaLR 0 390 3 745 244 32 76 chr3 171536352 171536457 -55988121 + MIR SINE MIR 164 256 -6 24 53 0 0 chr3 171537827 171537865 -55986713 + AT_rich Low_complexity Low_complexity 1 38 0 25 0 0 0 chr3 171537917 171537942 -55986636 + AT_rich Low_complexity Low_complexity 1 25 0 2167 114 0 3 chr3 171537986 171538285 -55986293 - AluSg SINE Alu -12 298 1 1356 274 65 42 chr3 171539024 171539789 -55984789 + HAL1 LINE L1 1015 1797 -710 1360 66 0 16 chr3 171540217 171540400 -55984178 + L1PA5 LINE L1 5969 6148 -6 337 289 77 21 chr3 171540580 171540774 -55983804 - L1MC4a LINE L1 -1885 5992 5788 1927 179 0 3 chr3 171541054 171541362 -55983216 - AluJb SINE Alu 0 312 6 2243 93 24 0 chr3 171541577 171541866 -55982712 + AluSx SINE Alu 1 296 -16 423 158 69 0 chr3 171541902 171542003 -55982575 - L1ME1 LINE L1 -5 6161 6054 2083 195 68 36 chr3 171542008 171542592 -55981986 - L1MC4a LINE L1 -870 5345 4743 1615 211 107 4 chr3 171542653 171543152 -55981426 + MLT1E2 LTR MaLR 89 626 0 3862 212 104 24 chr3 171543153 171545057 -55979521 - L1MEc LINE L1 -2611 3604 1599 322 274 14 0 chr3 171545405 171545478 -55979100 - MADE1 DNA Mariner 0 80 7 23 0 0 0 chr3 171545715 171545738 -55978840 + AT_rich Low_complexity Low_complexity 1 23 0 1551 165 4 0 chr3 171547789 171548026 -55976552 + AluSx SINE Alu 3 240 -72 628 194 89 6 chr3 171598621 171598801 -55925777 + L1M4 LINE L1 3569 3763 -2383 1851 183 28 49 chr3 171598811 171598924 -55925654 + L1M4 LINE L1 3999 4113 -2033 1946 117 57 0 chr3 171598924 171599207 -55925371 - AluSx SINE Alu -13 299 1 1851 183 28 49 chr3 171599207 171599586 -55924992 + L1M4 LINE L1 4113 4481 -1665 1611 153 39 18 chr3 171599596 171599878 -55924700 + AluJo SINE Alu 1 288 -24 376 289 88 60 chr3 171599921 171600278 -55924300 + L1ME3 LINE L1 5569 5937 -225 26 0 0 0 chr3 171600515 171600541 -55924037 + AT_rich Low_complexity Low_complexity 1 26 0 856 185 13 0 chr3 171600622 171600773 -55923805 + FRAM SINE Alu 1 153 -13 207 0 0 0 chr3 171600786 171600809 -55923769 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1052 181 8 13 chr3 171600832 171601070 -55923508 + L1MD3 LINE L1 7741 7977 -18 1711 188 24 3 chr3 171601095 171601388 -55923190 - AluJo SINE Alu -13 299 1 270 334 53 2 chr3 171601977 171602101 -55922477 - MIR SINE MIR -72 136 42 429 270 204 13 chr3 171602103 171602255 -55922323 - MER5A DNA MER1_type 0 189 9 1824 163 7 7 chr3 171602295 171602601 -55921977 - AluJb SINE Alu -3 309 4 246 248 52 92 chr3 171603757 171603910 -55920668 - L2 LINE L2 -6 3307 3161 291 333 73 0 chr3 171604412 171604535 -55920043 + MIR3 SINE MIR 45 176 -32 762 157 0 54 chr3 171604815 171604962 -55919616 + FLAM_C SINE Alu 1 139 -4 2179 102 3 10 chr3 171605000 171605304 -55919274 - AluSq SINE Alu -11 302 1 497 324 34 91 chr3 171612536 171612888 -55911690 + L2 LINE L2 2922 3253 -19 688 165 0 0 chr3 171612923 171613032 -55911546 + Charlie3 DNA MER1_type 129 237 -2473 245 307 90 40 chr3 171613193 171613308 -55911270 - MIR SINE MIR -86 122 1 2189 116 10 0 chr3 171613578 171613888 -55910690 - AluSq SINE Alu 0 313 1 23 54 0 0 chr3 171614866 171614903 -55909675 + AT_rich Low_complexity Low_complexity 1 37 0 790 189 0 33 chr3 171614939 171615092 -55909486 + AluJo SINE Alu 5 152 -160 1417 179 38 0 chr3 171615093 171615328 -55909250 - AluJo SINE Alu -68 244 1 233 355 165 25 chr3 171615360 171615718 -55908860 + L2 LINE L2 2872 3279 -34 22 35 0 0 chr3 171616166 171616195 -55908383 + AT_rich Low_complexity Low_complexity 1 29 0 740 171 0 8 chr3 171616281 171616398 -55908180 - FLAM_C SINE Alu -15 118 3 1564 176 26 66 chr3 171616585 171616965 -55907613 + MLT1A1 LTR MaLR 1 365 0 482 275 38 0 chr3 171616967 171617098 -55907480 - MIR SINE MIR -87 175 40 273 289 27 81 chr3 171617136 171617285 -55907293 + MIR3 SINE MIR 2 142 -66 732 230 40 24 chr3 171618215 171618463 -55906115 - L1ME2 LINE L1 -217 5947 5696 1441 133 53 49 chr3 171618495 171618861 -55905717 + MSTA LTR MaLR 1 375 0 349 348 19 19 chr3 171618866 171619024 -55905554 - L1ME2 LINE L1 -503 5659 5502 454 293 153 27 chr3 171619130 171619402 -55905176 + L2 LINE L2 2767 3072 -241 188 173 211 0 chr3 171619473 171619525 -55905053 + L2 LINE L2 3251 3313 0 244 328 147 40 chr3 171620166 171620364 -55904214 + L2 LINE L2 3053 3271 -1 5153 160 29 46 chr3 171621797 171622060 -55902518 + L1MA9 LINE L1 4620 4886 -1426 2488 34 3 3 chr3 171622060 171622358 -55902220 + AluY SINE Alu 1 298 -13 2011 149 0 3 chr3 171622368 171622663 -55901915 + AluSx SINE Alu 1 294 -18 5153 160 29 46 chr3 171622663 171624097 -55900481 + L1MA9 LINE L1 4895 6307 -5 722 175 21 14 chr3 171624124 171624267 -55900311 - AluJb SINE Alu -165 147 4 181 136 45 45 chr3 171624267 171624311 -55900267 + MER5B DNA MER1_type 74 117 -61 396 0 0 0 chr3 171624312 171624356 -55900222 + (TG)n Simple_repeat Simple_repeat 2 45 0 576 258 40 24 chr3 171624416 171624664 -55899914 - L1MC5 LINE L1 -51 7910 7659 340 197 15 0 chr3 171624705 171624771 -55899807 - MER5B DNA MER1_type -110 68 2 282 335 79 24 chr3 171624784 171624884 -55899694 - MER5A DNA MER1_type -3 186 72 2503 61 0 10 chr3 171624884 171625197 -55899381 - AluY SINE Alu -1 310 1 282 335 79 24 chr3 171625197 171625260 -55899318 - MER5A DNA MER1_type -117 72 14 209 32 0 32 chr3 171625747 171625778 -55898800 + (TG)n Simple_repeat Simple_repeat 2 31 0 270 250 95 0 chr3 171626162 171626246 -55898332 + Charlie2 DNA MER1_type 1856 1947 -915 1890 220 75 14 chr3 171626254 171626831 -55897747 + Charlie2 DNA MER1_type 2251 2862 0 22 35 0 0 chr3 171627144 171627173 -55897405 + AT_rich Low_complexity Low_complexity 1 29 0 279 254 8 41 chr3 171627241 171627363 -55897215 - FLAM_C SINE Alu -16 117 16 1628 150 109 0 chr3 171628651 171628925 -55895653 + AluJb SINE Alu 3 306 -6 568 296 99 0 chr3 171629076 171629228 -55895350 - MER5A DNA MER1_type -1 188 22 1891 134 11 72 chr3 171629235 171629594 -55894984 + MER1B DNA MER1_type 1 337 0 227 297 0 34 chr3 171631041 171631159 -55893419 + GA-rich Low_complexity Low_complexity 2 115 0 624 214 28 28 chr3 171631231 171631409 -55893169 - L1 LINE L1 -1484 4662 4485 1316 99 0 11 chr3 171631410 171631591 -55892987 - AluSg/x SINE Alu 0 309 131 419 105 126 0 chr3 171631594 171631689 -55892889 - L1 LINE L1 -1659 4487 4381 707 174 17 6 chr3 171631690 171631862 -55892716 + L1M4 LINE L1 2860 3033 -3113 5216 239 94 14 chr3 171631872 171632191 -55892387 - L1 LINE L1 -1416 4730 4438 420 20 0 0 chr3 171632191 171632240 -55892338 + (TG)n Simple_repeat Simple_repeat 2 50 0 5216 239 94 14 chr3 171632240 171632609 -55891969 - L1 LINE L1 -1708 4438 4100 1583 181 15 4 chr3 171632609 171632880 -55891698 - AluSx SINE Alu -38 274 1 5216 239 94 14 chr3 171632880 171634103 -55890475 - L1 LINE L1 -2046 4100 2664 2089 118 3 34 chr3 171634110 171634431 -55890147 - AluJb SINE Alu -1 311 1 323 232 129 29 chr3 171635068 171635340 -55889238 - AluJb SINE Alu 0 302 4 739 195 0 0 chr3 171635379 171635507 -55889071 + FLAM_C SINE Alu 5 132 -1 1183 213 22 124 chr3 171635514 171636007 -55888571 + L1MB8 LINE L1 5726 6168 -16 2071 126 0 0 chr3 171636015 171636308 -55888270 + AluY SINE Alu 1 293 -18 637 200 73 0 chr3 171636320 171636430 -55888148 + FLAM_C SINE Alu 1 118 -15 638 252 102 10 chr3 171636438 171636851 -55887727 - L1MEc LINE L1 -5070 1326 876 180 0 0 0 chr3 171636854 171636874 -55887704 + (TTAAA)n Simple_repeat Simple_repeat 1 20 0 718 104 19 0 chr3 171636888 171636994 -55887584 - AluJb SINE Alu -194 118 11 295 267 62 11 chr3 171637002 171637178 -55887400 - L1MEc LINE L1 -5506 890 706 700 183 26 0 chr3 171637240 171637355 -55887223 + FLAM_C SINE Alu 1 118 -15 37 39 0 0 chr3 171637364 171637415 -55887163 + AT_rich Low_complexity Low_complexity 1 51 0 1247 185 70 35 chr3 171637483 171637797 -55886781 - MER21B LTR ERV1 -127 736 412 372 329 148 13 chr3 171637830 171637985 -55886593 - L1MEc LINE L1 -5993 403 228 705 175 33 0 chr3 171637987 171638107 -55886471 + FLAM_C SINE Alu 1 124 -19 780 152 0 60 chr3 171638109 171638136 -55886442 + MLT1B LTR MaLR 249 276 -114 1897 143 6 32 chr3 171638136 171638451 -55886127 + AluJo SINE Alu 1 307 -5 780 152 0 60 chr3 171638451 171638574 -55886004 + MLT1B LTR MaLR 276 390 0 430 258 16 0 chr3 171638613 171638737 -55885841 - L1MEc LINE L1 -6214 182 57 2386 92 0 7 chr3 171639077 171639383 -55885195 + AluSp SINE Alu 1 304 -9 27 49 0 0 chr3 171639798 171639839 -55884739 + AT_rich Low_complexity Low_complexity 1 41 0 251 324 83 9 chr3 171640306 171640414 -55884164 + L2 LINE L2 3141 3256 -16 2548 54 0 0 chr3 171641518 171641815 -55882763 - AluY SINE Alu -14 297 1 182 300 75 12 chr3 171642118 171642198 -55882380 - L2 LINE L2 -2078 1236 1152 2337 68 24 3 chr3 171642315 171642611 -55881967 - AluSx SINE Alu -10 302 1 246 252 144 0 chr3 171643069 171643171 -55881407 + MIR3 SINE MIR 45 160 -48 30 0 0 0 chr3 171643261 171643291 -55881287 + AT_rich Low_complexity Low_complexity 1 30 0 17798 60 6 0 chr3 171643481 171645967 -55878611 + L1P LINE L1 1152 3652 -2494 2089 113 7 3 chr3 171647045 171647336 -55877242 - AluSx SINE Alu -18 294 3 2828 149 3 59 chr3 171647339 171647963 -55876615 - L1PB2 LINE L1 -118 6033 5445 24 32 0 0 chr3 171648359 171648390 -55876188 + AT_rich Low_complexity Low_complexity 1 31 0 224 270 215 19 chr3 171648621 171648753 -55875825 - MIR SINE MIR -65 143 13 27 29 0 0 chr3 171649633 171649667 -55874911 + AT_rich Low_complexity Low_complexity 1 34 0 1527 84 4 27 chr3 171649667 171649892 -55874686 + AluSq SINE Alu 1 220 -93 374 171 0 14 chr3 171650528 171650598 -55873980 + MER5B DNA MER1_type 2 70 -108 327 261 60 42 chr3 171650602 171650886 -55873692 + L1MC5 LINE L1 7625 7913 -48 807 332 91 68 chr3 171651015 171651565 -55873013 + L3 LINE CR1 327 898 -679 1911 126 27 0 chr3 171651565 171651858 -55872720 - AluSx SINE Alu -6 306 6 807 332 91 68 chr3 171651858 171651999 -55872579 + L3 LINE CR1 898 1034 -543 28 29 0 0 chr3 171652833 171652868 -55871710 + AT_rich Low_complexity Low_complexity 1 35 0 732 184 0 34 chr3 171653515 171653662 -55870916 - FLAM_C SINE Alu -1 142 1 2070 115 34 14 chr3 171653663 171653959 -55870619 - AluSx SINE Alu -10 302 1 186 43 0 0 chr3 171655215 171655238 -55869340 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2304 102 0 3 chr3 171655670 171655974 -55868604 - AluSx SINE Alu -9 303 1 1679 208 102 72 chr3 171656558 171657425 -55867153 - L1MC5 LINE L1 -107 7854 6962 1235 146 50 0 chr3 171657430 171657629 -55866949 - AluJo SINE Alu -18 294 86 2430 84 3 0 chr3 171657642 171657951 -55866627 - AluSp SINE Alu -3 310 1 410 232 196 42 chr3 171658005 171658173 -55866405 - L1MC5 LINE L1 -1041 6920 6727 21 36 0 0 chr3 171658395 171658423 -55866155 + AT_rich Low_complexity Low_complexity 1 28 0 230 239 0 0 chr3 171659233 171659279 -55865299 - MIR SINE MIR -4 258 213 288 247 62 31 chr3 171659320 171659417 -55865161 - MIR SINE MIR -162 100 1 1993 145 0 10 chr3 171660488 171660777 -55863801 + AluJo SINE Alu 1 286 -26 344 319 52 65 chr3 171660920 171661149 -55863429 + L1ME LINE L1 4054 4279 -1867 276 277 104 51 chr3 171661387 171661420 -55863158 + L1ME LINE L1 4710 4740 -1406 1953 129 0 0 chr3 171661420 171661683 -55862895 + AluSc SINE Alu 30 292 -17 276 277 104 51 chr3 171661683 171662064 -55862514 + L1ME LINE L1 4740 5146 -1000 615 294 6 0 chr3 171662279 171662442 -55862136 + FRAM SINE Alu 1 164 -2 321 307 95 37 chr3 171662445 171662634 -55861944 + L1ME LINE L1 5338 5537 -584 2137 113 3 13 chr3 171662639 171662940 -55861638 + AluSq SINE Alu 1 298 -15 2230 110 0 0 chr3 171663007 171663298 -55861280 - AluSx SINE Alu -21 291 1 737 229 0 0 chr3 171663322 171663462 -55861116 + FRAM SINE Alu 4 143 -33 226 61 30 0 chr3 171663467 171663500 -55861078 + (TAAA)n Simple_repeat Simple_repeat 4 37 0 3689 96 6 2 chr3 171664536 171665086 -55859492 + HERVH LTR ERV1 4283 4834 -2879 3543 103 5 19 chr3 171665093 171665658 -55858920 + HERVH LTR ERV1 7157 7713 0 1101 184 103 70 chr3 171665658 171666087 -55858491 + LTR7 LTR ERV1 1 443 -7 836 178 34 0 chr3 171666160 171666306 -55858272 + FRAM SINE Alu 1 150 -26 398 205 8 33 chr3 171666309 171666431 -55858147 + L1MC5 LINE L1 7731 7849 -112 21 0 0 0 chr3 171668267 171668288 -55856290 + AT_rich Low_complexity Low_complexity 1 21 0 2536 40 3 3 chr3 171668389 171668689 -55855889 + AluSp SINE Alu 1 300 -13 2274 100 0 3 chr3 171669718 171670018 -55854560 + AluSx SINE Alu 1 299 -13 2180 108 3 0 chr3 171670409 171670697 -55853881 - AluSx SINE Alu -23 289 1 31 58 0 0 chr3 171670982 171671034 -55853544 + AT_rich Low_complexity Low_complexity 1 52 0 1256 189 0 13 chr3 171671074 171671312 -55853266 + AluSx SINE Alu 1 235 -77 201 235 12 49 chr3 171672299 171672380 -55852198 + T-rich Low_complexity Low_complexity 1 78 0 1999 113 31 28 chr3 171672953 171673244 -55851334 + AluSx SINE Alu 1 292 -20 1621 185 47 7 chr3 171673306 171673604 -55850974 + AluJb SINE Alu 1 310 -2 1504 201 105 9 chr3 171674134 171674467 -55850111 - MLT1A1 LTR MaLR 0 365 1 954 234 23 9 chr3 171674488 171674702 -55849876 - AluJo SINE Alu -11 301 85 815 165 0 0 chr3 171674740 171674867 -55849711 - FLAM_C SINE Alu -6 127 1 81 85 0 0 chr3 171675391 171675591 -55848987 + AT_rich Low_complexity Low_complexity 1 200 0 22 0 0 0 chr3 171676300 171676322 -55848256 + AT_rich Low_complexity Low_complexity 1 22 0 2103 104 50 20 chr3 171676574 171676872 -55847706 + AluSq SINE Alu 1 307 -6 251 266 57 57 chr3 171677286 171677410 -55847168 - L2 LINE L2 -209 3063 2940 813 148 297 0 chr3 171677410 171677651 -55846927 - Tigger7 DNA MER2_type -1 2486 2274 2626 153 79 4 chr3 171677658 171678162 -55846416 - Tigger7 DNA MER2_type -172 561 20 21 36 0 0 chr3 171678729 171678757 -55845821 + AT_rich Low_complexity Low_complexity 1 28 0 2206 94 17 0 chr3 171679154 171679442 -55845136 - AluSx SINE Alu -19 293 1 2457 72 0 0 chr3 171679468 171679760 -55844818 - AluY SINE Alu -19 292 1 436 269 180 0 chr3 171681443 171681610 -55842968 - MIR SINE MIR -61 201 5 494 310 112 12 chr3 171681665 171681991 -55842587 - L1MC/D LINE L1 -747 5399 5239 527 193 219 0 chr3 171682224 171682343 -55842235 - FRAM SINE Alu -32 144 1 2043 130 10 3 chr3 171682387 171682687 -55841891 + AluSq SINE Alu 1 302 -11 242 65 0 0 chr3 171682749 171682780 -55841798 + MLT2C2 LTR ERVL 434 464 0 1482 218 33 22 chr3 171682844 171683206 -55841372 + MLT1A2 LTR MaLR 5 370 -4 2674 39 0 0 chr3 171683243 171683550 -55841028 + AluY SINE Alu 1 307 -4 601 207 0 0 chr3 171683733 171683844 -55840734 - FLAM_C SINE Alu -32 111 1 965 211 53 4 chr3 171683844 171684090 -55840488 + MER58B DNA MER1_type 83 340 -1 821 207 0 0 chr3 171684232 171684382 -55840196 + AluJb SINE Alu 149 298 -14 1787 130 11 11 chr3 171684590 171684875 -55839703 - AluSx SINE Alu -27 285 1 5766 123 118 28 chr3 171685718 171686330 -55838248 + Tigger3b DNA MER2_type 1 556 -2472 1816 170 0 0 chr3 171686330 171686613 -55837965 - AluJb SINE Alu -12 300 18 5766 123 118 28 chr3 171686613 171687129 -55837449 + Tigger3b DNA MER2_type 556 1231 0 1685 158 71 0 chr3 171687539 171687805 -55836773 - AluJb SINE Alu -26 286 2 354 247 47 0 chr3 171687822 171687907 -55836671 + L1MC4 LINE L1 6615 6703 -1339 * 360 314 10 0 chr3 171687832 171687934 -55836644 - L1MC4 LINE L1 -1340 6702 6600 5313 127 61 47 chr3 171688446 171689592 -55834986 + L1MC1 LINE L1 5186 6333 0 24 0 0 0 chr3 171689592 171689616 -55834962 + AT_rich Low_complexity Low_complexity 1 24 0 245 258 0 34 chr3 171689932 171690021 -55834557 + GA-rich Low_complexity Low_complexity 1 86 0 1554 152 3 121 chr3 171690540 171690723 -55833855 - AluJb SINE Alu -10 292 164 1708 168 11 11 chr3 171690723 171691009 -55833569 + AluSx SINE Alu 3 288 -24 1554 152 3 121 chr3 171691009 171691155 -55833423 - AluJb SINE Alu -138 164 2 891 170 113 0 chr3 171691315 171691474 -55833104 - MER45A DNA AcHobo -1 177 1 29 0 0 0 chr3 171691661 171691690 -55832888 + AT_rich Low_complexity Low_complexity 1 29 0 1970 142 0 3 chr3 171691698 171692007 -55832571 - AluJb SINE Alu 0 308 1 1016 179 0 0 chr3 171692017 171692179 -55832399 - AluJb SINE Alu -22 290 129 1627 104 0 5 chr3 171692530 171692742 -55831836 - AluSg/x SINE Alu -18 292 82 775 249 60 21 chr3 171692781 171693114 -55831464 - L1ME LINE L1 -299 5822 5477 623 228 85 82 chr3 171693249 171693627 -55830951 - MER68 LTR ERV1 0 562 184 2242 135 0 0 chr3 171694023 171694335 -55830243 + AluSx SINE Alu 1 312 0 241 214 54 18 chr3 171694689 171694745 -55829833 - MLT1K LTR MaLR -505 83 26 197 33 33 0 chr3 171694765 171694795 -55829783 + (TTA)n Simple_repeat Simple_repeat 3 33 0 326 78 0 0 chr3 171694883 171694934 -55829644 - Alu SINE Alu -250 51 1 724 161 25 0 chr3 171694934 171695052 -55829526 + MER41E LTR ERV1 392 512 0 331 272 10 0 chr3 171695228 171695331 -55829247 + L1MC5 LINE L1 7289 7392 -569 1710 149 62 7 chr3 171695333 171695622 -55828956 + AluJb SINE Alu 1 305 -7 274 267 30 0 chr3 171695776 171695877 -55828701 + MER90 LTR ERV1 170 273 -302 538 138 181 81 chr3 171695881 171695930 -55828648 + LTR23 LTR ERV1 1 44 -393 2170 85 34 3 chr3 171695930 171696225 -55828353 - AluY SINE Alu -6 305 2 538 138 181 81 chr3 171696225 171696335 -55828243 + LTR23 LTR ERV1 44 176 -261 1382 162 0 0 chr3 171696336 171696546 -55828032 - AluJb SINE Alu -22 290 81 3457 154 25 40 chr3 171696588 171697231 -55827347 - MER41B LTR ERV1 -2 633 1 473 179 6 109 chr3 171697262 171697342 -55827236 + MER90 LTR ERV1 461 519 -95 1459 177 159 14 chr3 171697342 171697687 -55826891 - MSTD LTR MaLR -1 395 1 473 179 6 109 chr3 171697687 171697762 -55826816 + MER90 LTR ERV1 519 600 -14 365 225 75 38 chr3 171697765 171697925 -55826653 + L1MC5 LINE L1 7515 7680 -281 297 307 33 7 chr3 171697955 171698105 -55826473 + HERVH LTR ERV1 4185 4338 -3375 314 213 35 59 chr3 171698410 171698579 -55825999 + G-rich Low_complexity Low_complexity 5 169 0 398 273 36 36 chr3 171698690 171698800 -55825778 + L2 LINE L2 3162 3271 -1 278 276 10 71 chr3 171698807 171698905 -55825673 + MIR3 SINE MIR 77 168 -40 437 225 0 0 chr3 171699141 171699252 -55825326 + L1MC4 LINE L1 7925 8035 -7 201 74 0 0 chr3 171699838 171699865 -55824713 + (T)n Simple_repeat Simple_repeat 1 27 0 35 54 0 0 chr3 171701983 171702039 -55822539 + AT_rich Low_complexity Low_complexity 1 56 0 21 36 0 0 chr3 171703285 171703313 -55821265 + AT_rich Low_complexity Low_complexity 1 28 0 492 287 178 61 chr3 171703329 171703785 -55820793 + L2 LINE L2 2093 2601 -713 488 181 121 0 chr3 171703826 171703942 -55820636 + MER58 DNA MER1_type 56 185 -156 * 554 203 30 8 chr3 171703938 171704071 -55820507 + MER58 DNA MER1_type 2270 2405 -15 2363 66 0 20 chr3 171704099 171704403 -55820175 - AluY SINE Alu -13 298 1 217 330 107 46 chr3 171704480 171704536 -55820042 + L2 LINE L2 2763 2814 -500 783 250 72 5 chr3 171704536 171704744 -55819834 + MER58A DNA MER1_type 1 222 -2 217 330 107 46 chr3 171704744 171704884 -55819694 + L2 LINE L2 2814 2971 -343 30 0 0 0 chr3 171706890 171706920 -55817658 + AT_rich Low_complexity Low_complexity 1 30 0 1056 107 51 17 chr3 171707109 171707286 -55817292 - MER46A DNA MER2_type 0 236 54 2931 227 64 12 chr3 171708121 171709407 -55815171 + L1 LINE L1 2164 3571 -2575 217 304 43 0 chr3 171709415 171709530 -55815048 - L2 LINE L2 -3 3269 3150 4488 62 16 11 chr3 171709616 171710248 -55814330 + SVA Other Other 1 635 -751 6575 82 136 11 chr3 171711258 171712362 -55812216 + L1P LINE L1 2 1243 -4903 180 0 0 0 chr3 171712861 171712881 -55811697 + (TTTTTA)n Simple_repeat Simple_repeat 2 21 0 731 207 55 0 chr3 171713404 171713549 -55811029 - AluJb SINE Alu 0 312 160 309 285 268 6 chr3 171713769 171713948 -55810630 - L2 LINE L2 -167 3146 2921 416 327 64 30 chr3 171714038 171714335 -55810243 - L2 LINE L2 -606 2708 2402 763 135 0 40 chr3 171714682 171714808 -55809770 + FLAM_A SINE Alu 11 131 -11 1073 171 15 0 chr3 171715170 171715375 -55809203 - L1 LINE L1 -1984 4162 3955 1819 165 14 3 chr3 171715536 171715833 -55808745 - AluJb SINE Alu -12 300 1 252 312 50 21 chr3 171717245 171717386 -55807192 - MIR SINE MIR -56 206 62 288 0 0 0 chr3 171717440 171717472 -55807106 + (TG)n Simple_repeat Simple_repeat 2 33 0 320 276 113 79 chr3 171718109 171718312 -55806266 + L1M2 LINE L1 734 943 -5906 2199 105 3 0 chr3 171718534 171718828 -55805750 - AluSx SINE Alu -17 295 1 419 263 120 0 chr3 171718935 171719068 -55805510 + MIR SINE MIR 52 200 -62 884 145 30 24 chr3 171719525 171719691 -55804887 - MSTD LTR MaLR -11 385 219 382 195 35 0 chr3 171719715 171719802 -55804776 - MSTD LTR MaLR -303 93 4 252 0 0 0 chr3 171720101 171720129 -55804449 + (T)n Simple_repeat Simple_repeat 1 28 0 216 222 0 0 chr3 171720965 171721001 -55803577 - MIR SINE MIR -131 77 42 24 0 0 0 chr3 171721277 171721301 -55803277 + AT_rich Low_complexity Low_complexity 1 24 0 5812 22 0 0 chr3 171721301 171721970 -55802608 - L1PA3 LINE L1 -1 6154 5486 8586 19 0 0 chr3 171721974 171723423 -55801155 + L1P1 LINE L1 4330 5778 -377 4915 62 1 0 chr3 171723674 171724475 -55800103 + L1P1 LINE L1 4687 5488 -667 1312 137 0 16 chr3 171724538 171724721 -55799857 - AluJb SINE Alu -132 180 1 1275 174 5 0 chr3 171725101 171725296 -55799282 + AluJo SINE Alu 6 201 -111 219 36 0 0 chr3 171725613 171725641 -55798937 + (GTTTG)n Simple_repeat Simple_repeat 2 29 0 1730 87 7 87 chr3 171725646 171725921 -55798657 - AluSx SINE Alu -37 275 23 2419 213 92 9 chr3 171726515 171727082 -55797496 - MER90 LTR ERV1 0 614 1 23 33 0 0 chr3 171727146 171727176 -55797402 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr3 171727236 171727262 -55797316 + AT_rich Low_complexity Low_complexity 1 26 0 258 301 24 12 chr3 171727746 171727829 -55796749 - MIR SINE MIR -105 103 20 691 102 76 0 chr3 171728103 171728221 -55796357 + L1PA13 LINE L1 6026 6152 -11 30 59 0 0 chr3 171728637 171728688 -55795890 + AT_rich Low_complexity Low_complexity 1 51 0 366 23 0 0 chr3 171729069 171729112 -55795466 + (CA)n Simple_repeat Simple_repeat 2 44 0 258 279 0 51 chr3 171729122 171729201 -55795377 + MIR SINE MIR 114 188 -74 264 231 0 46 chr3 171729384 171729449 -55795129 + MIR3 SINE MIR 136 197 -11 663 227 8 0 chr3 171730330 171730462 -55794116 + FLAM_A SINE Alu 1 133 0 2808 173 60 34 chr3 171731172 171732044 -55792534 + L1M4 LINE L1 4924 5821 -357 778 188 17 0 chr3 171732058 171732239 -55792339 + L1PBa LINE L1 1 184 -6679 612 95 38 0 chr3 171732271 171732376 -55792202 + L1PBa LINE L1 1137 1245 -5618 1581 30 0 15 chr3 171732481 171732683 -55791895 - L1PA6 LINE L1 -296 5858 5660 241 351 58 44 chr3 171732736 171732941 -55791637 - L2 LINE L2 -540 2774 2567 185 296 86 12 chr3 171733371 171733452 -55791126 - L2 LINE L2 -17 3296 3210 239 285 44 0 chr3 171734008 171734166 -55790412 - L1M4 LINE L1 -1711 4435 4271 195 235 0 0 chr3 171734325 171734376 -55790202 + (CATA)n Simple_repeat Simple_repeat 3 53 0 885 198 151 10 chr3 171734402 171734594 -55789984 - MER20 DNA MER1_type 0 219 1 475 224 51 6 chr3 171734605 171734761 -55789817 - L1M4 LINE L1 -2154 3992 3830 216 67 0 0 chr3 171736262 171736292 -55788286 + (TTTTA)n Simple_repeat Simple_repeat 1 30 0 5899 94 17 2 chr3 171736292 171737720 -55786858 - L1PA5 LINE L1 -24 6130 4685 4294 115 12 11 chr3 171737827 171738586 -55785992 + L1MA5A LINE L1 5195 5956 -341 591 94 94 0 chr3 171739052 171739158 -55785420 + L1MA5A LINE L1 5936 6051 -246 1888 88 4 4 chr3 171739159 171739421 -55785157 + L1PB1 LINE L1 5885 6146 -5 8861 103 9 21 chr3 171739604 171741114 -55783464 - L1P3 LINE L1 -4483 1978 474 208 246 18 18 chr3 171743616 171743673 -55780905 + L2 LINE L2 3216 3272 0 399 383 109 27 chr3 171743734 171744173 -55780405 + L2 LINE L2 2397 2871 -443 203 125 25 0 chr3 171744197 171744237 -55780341 + (TA)n Simple_repeat Simple_repeat 1 41 0 6089 127 19 132 chr3 171744743 171745658 -55778920 + L1P4 LINE L1 3016 3874 -2272 1140 134 139 0 chr3 171745658 171745845 -55778733 + AluSg1 SINE Alu 1 213 -96 6089 127 19 132 chr3 171745845 171746374 -55778204 + L1P4 LINE L1 3874 4461 -1685 2416 81 33 0 chr3 171747282 171747641 -55776937 + L1P4 LINE L1 5357 5727 -434 318 323 40 40 chr3 171748436 171748560 -55776018 + L2 LINE L2 3149 3272 0 9378 27 6 7 chr3 171748984 171750315 -55774263 + L1P2 LINE L1 4187 5512 -643 186 133 0 0 chr3 171751655 171751685 -55772893 + (TATATG)n Simple_repeat Simple_repeat 5 34 0 2064 134 24 24 chr3 171751758 171752131 -55772447 + THE1C LTR MaLR 1 373 -2 3919 144 81 67 chr3 171752133 171753017 -55771561 + THE1C-int LTR MaLR 1 897 -683 188 322 33 11 chr3 171753146 171753236 -55771342 - L2 LINE L2 -286 2986 2895 220 354 108 13 chr3 171753398 171753556 -55771022 - L2 LINE L2 -568 2746 2574 610 111 0 0 chr3 171753934 171754015 -55770563 + AluJ/FLAM SINE Alu 5 85 -227 2072 118 14 10 chr3 171754235 171754523 -55770055 + AluSx SINE Alu 5 293 -19 2253 108 0 19 chr3 171755341 171755657 -55768921 + AluSg SINE Alu 1 310 0 668 175 6 38 chr3 171755673 171755833 -55768745 + L1P LINE L1 5028 5182 -964 7314 67 6 8 chr3 171756246 171757349 -55767229 - L1PA5 LINE L1 -1 6153 5050 794 194 77 32 chr3 171758987 171759142 -55765436 - AluJo SINE Alu -149 163 2 22 56 0 0 chr3 171760236 171760272 -55764306 + AT_rich Low_complexity Low_complexity 1 36 0 1973 165 24 24 chr3 171761562 171761896 -55762682 - MER1B DNA MER1_type 0 337 4 258 194 184 10 chr3 171763537 171763635 -55760943 - Charlie7 DNA MER1_type -88 2524 2410 * 1011 266 132 14 chr3 171763618 171763983 -55760595 - Charlie7 DNA MER1_type -1887 725 318 2193 81 16 24 chr3 171764239 171764609 -55759969 + LTR7 LTR ERV1 2 412 -38 228 130 0 0 chr3 171764609 171764655 -55759923 + (TAAA)n Simple_repeat Simple_repeat 3 48 0 1911 96 18 14 chr3 171765735 171766015 -55758563 + AluSc SINE Alu 1 281 -28 429 20 0 0 chr3 171766015 171766065 -55758513 + (TA)n Simple_repeat Simple_repeat 2 51 0 538 269 134 5 chr3 171766149 171766335 -55758243 - L2 LINE L2 -1 3312 3103 4834 136 10 35 chr3 171767989 171768898 -55755680 + L1P LINE L1 3591 4476 -1670 972 105 0 0 chr3 171769347 171769471 -55755107 + AluSq/x SINE Alu 1 124 -188 240 93 70 0 chr3 171770000 171770043 -55754535 - Alu SINE Alu -1 301 256 1697 139 114 4 chr3 171770367 171770647 -55753931 - AluJb SINE Alu -1 311 1 300 53 0 0 chr3 171771018 171771056 -55753522 + (CA)n Simple_repeat Simple_repeat 1 38 0 1982 156 0 0 chr3 171771106 171771401 -55753177 + AluSx SINE Alu 1 295 -17 22 70 0 0 chr3 171771513 171771556 -55753022 + AT_rich Low_complexity Low_complexity 1 43 0 595 247 20 13 chr3 171771565 171771715 -55752863 - MER4C LTR ERV1 0 465 315 487 170 260 0 chr3 171771715 171771815 -55752763 - FLAM_C SINE Alu -14 129 4 233 294 0 15 chr3 171771835 171771903 -55752675 + GA-rich Low_complexity Low_complexity 3 69 0 1788 161 38 24 chr3 171771906 171772359 -55752219 - MER4A LTR ERV1 -248 416 1 21 0 0 0 chr3 171772770 171772791 -55751787 + AT_rich Low_complexity Low_complexity 1 21 0 565 162 19 19 chr3 171773255 171773360 -55751218 + FRAM SINE Alu 44 148 -28 294 29 0 0 chr3 171773360 171773395 -55751183 + (TAA)n Simple_repeat Simple_repeat 2 36 0 804 122 16 41 chr3 171773421 171773511 -55751067 + AluJo SINE Alu 11 99 -213 3251 150 34 80 chr3 171773511 171774041 -55750537 + LTR9 LTR ERV1 1 499 -113 2388 96 0 0 chr3 171774041 171774343 -55750235 - AluSg SINE Alu -8 302 1 3251 150 34 80 chr3 171774343 171774453 -55750125 + LTR9 LTR ERV1 499 612 0 804 122 16 41 chr3 171774453 171774485 -55750093 + AluJo SINE Alu 99 130 -182 1941 177 34 43 chr3 171774580 171775134 -55749444 - MLT2A2 LTR ERVL 0 554 1 1158 152 0 0 chr3 171777060 171777231 -55747347 + AluJo SINE Alu 134 304 -8 258 271 52 26 chr3 171777254 171777409 -55747169 + L1ME4a LINE L1 2202 2360 -3786 261 340 19 0 chr3 171777614 171777717 -55746861 + L1ME4a LINE L1 2458 2562 -3584 391 311 160 23 chr3 171777781 171778087 -55746491 + L1ME4a LINE L1 2651 2998 -3148 2786 250 76 53 chr3 171778099 171778786 -55745792 - L2 LINE L2 -223 3090 2357 1532 172 3 75 chr3 171778786 171779106 -55745472 - AluJb SINE Alu -15 297 1 2786 250 76 53 chr3 171779106 171779522 -55745056 - L2 LINE L2 -956 2357 1952 24 32 0 0 chr3 171779522 171779553 -55745025 + AT_rich Low_complexity Low_complexity 1 31 0 2158 103 10 0 chr3 171779695 171779986 -55744592 + AluSx SINE Alu 1 294 -18 21 36 0 0 chr3 171780141 171780169 -55744409 + AT_rich Low_complexity Low_complexity 1 28 0 228 254 0 45 chr3 171780303 171780370 -55744208 + GA-rich Low_complexity Low_complexity 2 65 0 1229 77 13 0 chr3 171780706 171780861 -55743717 + AluSc SINE Alu 141 297 -12 2302 102 0 3 chr3 171780872 171781176 -55743402 + AluSx SINE Alu 1 303 -9 530 277 185 15 chr3 171781305 171781500 -55743078 - MIR SINE MIR -33 229 2 240 347 63 68 chr3 171781504 171781726 -55742852 - L2 LINE L2 -21 3251 3031 200 262 78 58 chr3 171781692 171781795 -55742783 - MIR SINE MIR -87 121 17 * 217 222 63 16 chr3 171781835 171781898 -55742680 + L2 LINE L2 3199 3264 -8 239 245 295 43 chr3 171782517 171782656 -55741922 + L3 LINE CR1 1063 1236 -341 189 345 172 0 chr3 171783514 171783630 -55740948 - L2 LINE L2 -5 3267 3132 1213 199 68 3 chr3 171784942 171785238 -55739340 + L1ME4a LINE L1 3712 4026 -2120 813 163 0 0 chr3 171785239 171785362 -55739216 + FLAM_C SINE Alu 1 123 -20 1758 206 9 45 chr3 171785397 171785530 -55739048 + L1ME4a LINE L1 4006 4142 -2004 2327 97 3 3 chr3 171785530 171785830 -55738748 + AluSc SINE Alu 1 300 -9 1758 206 9 45 chr3 171785830 171786118 -55738460 + L1ME4a LINE L1 4142 4412 -1734 745 150 0 35 chr3 171786326 171786439 -55738139 + FLAM_A SINE Alu 20 128 -14 717 228 46 78 chr3 171786825 171786938 -55737640 + L1ME4a LINE L1 5530 5645 -476 1469 183 14 17 chr3 171786938 171787256 -55737322 - AluJb SINE Alu 0 317 1 717 228 46 78 chr3 171787256 171787447 -55737131 + L1ME4a LINE L1 5645 5826 -295 186 43 0 0 chr3 171787582 171787605 -55736973 + (TA)n Simple_repeat Simple_repeat 2 24 0 2050 138 27 0 chr3 171787642 171787940 -55736638 + AluSx SINE Alu 1 306 -6 258 136 0 0 chr3 171787947 171787991 -55736587 + (T)n Simple_repeat Simple_repeat 1 44 0 275 255 0 0 chr3 171787992 171788043 -55736535 - MER66A LTR ERV1 -141 337 287 1734 190 0 0 chr3 171788069 171788358 -55736220 + AluJo SINE Alu 1 289 -23 566 77 19 19 chr3 171788416 171788520 -55736058 + (TTCC)n Simple_repeat Simple_repeat 4 107 0 1746 176 25 3 chr3 171788525 171788809 -55735769 - AluJb SINE Alu -16 296 7 1654 184 29 0 chr3 171788906 171789207 -55735371 - AluJb SINE Alu 0 309 1 24 0 0 0 chr3 171789603 171789627 -55734951 + AT_rich Low_complexity Low_complexity 1 24 0 821 251 19 84 chr3 171789702 171790073 -55734505 - L1M4 LINE L1 -1282 4864 4518 2018 131 0 0 chr3 171790178 171790452 -55734126 + AluSx SINE Alu 2 275 -37 1476 193 26 56 chr3 171791016 171791191 -55733387 - AluJo SINE Alu -4 298 134 2087 126 7 0 chr3 171791191 171791484 -55733094 - AluSx SINE Alu -17 295 1 1476 193 26 56 chr3 171791484 171791613 -55732965 - AluJo SINE Alu -168 134 3 487 274 110 63 chr3 171791657 171791875 -55732703 + L1ME4a LINE L1 5622 5828 -293 1643 162 7 11 chr3 171791875 171792159 -55732419 - AluJb SINE Alu -18 294 12 487 274 110 63 chr3 171792159 171792276 -55732302 + L1ME4a LINE L1 5828 5938 -183 664 254 124 0 chr3 171792276 171792461 -55732117 + MER3 DNA MER1_type 1 208 -1 487 274 110 63 chr3 171792461 171792587 -55731991 + L1ME4a LINE L1 5938 6106 -15 2202 117 17 0 chr3 171793131 171793431 -55731147 + AluSx SINE Alu 1 305 -7 21 0 0 0 chr3 171793584 171793605 -55730973 + AT_rich Low_complexity Low_complexity 1 21 0 1601 88 60 5 chr3 171793605 171793821 -55730757 - L1PB1 LINE L1 0 6151 5924 378 318 15 15 chr3 171793848 171793980 -55730598 - MIR SINE MIR -128 134 3 2198 89 14 3 chr3 171794039 171794330 -55730248 - AluSq SINE Alu -19 294 1 968 134 0 0 chr3 171794613 171794740 -55729838 - FLAM_C SINE Alu -16 127 1 4376 163 30 7 chr3 171795416 171796170 -55728408 - L1MB7 LINE L1 -9 6175 5404 2275 104 3 3 chr3 171796180 171796487 -55728091 - AluSx SINE Alu -5 307 1 1963 120 37 27 chr3 171797855 171798155 -55726423 + AluSx SINE Alu 1 303 -9 792 189 7 14 chr3 171798478 171798621 -55725957 + FLAM_C SINE Alu 2 143 0 1055 188 14 14 chr3 171799182 171799390 -55725188 + AluJo SINE Alu 87 294 -18 564 138 165 28 chr3 171799399 171799508 -55725070 - FLAM_C SINE Alu -9 124 1 1983 178 84 7 chr3 171799537 171799964 -55724614 + MLT1C LTR MaLR 8 467 0 2436 177 99 33 chr3 171800961 171801260 -55723318 - Tigger7 DNA MER2_type 0 2487 2209 1324 177 146 8 chr3 171801260 171801520 -55723058 + AluSg1 SINE Alu 1 296 -13 2436 177 99 33 chr3 171801520 171801784 -55722794 - Tigger7 DNA MER2_type -278 2209 2 1504 202 13 13 chr3 171802207 171802514 -55722064 + AluJb SINE Alu 1 307 -5 368 222 0 0 chr3 171802846 171802899 -55721679 - MLT1A1 LTR MaLR 0 365 313 586 125 31 10 chr3 171802899 171802995 -55721583 + MER4A LTR ERV1 1 98 -566 1899 122 3 64 chr3 171802995 171803363 -55721215 + MER4A LTR ERV1 261 664 0 1864 122 90 0 chr3 171803366 171803654 -55720924 + MER4A-int LTR ERV1 1 314 -6284 246 56 0 56 chr3 171803673 171803709 -55720869 + LTR49 LTR ERV1 280 313 -282 1592 109 38 4 chr3 171803709 171803948 -55720630 + MER4A-int LTR ERV1 865 1111 -5487 219 114 0 0 chr3 171803948 171803983 -55720595 + (TG)n Simple_repeat Simple_repeat 2 36 0 7557 119 48 16 chr3 171803983 171805276 -55719302 + MER4A-int LTR ERV1 1161 2495 -4103 1458 150 71 0 chr3 171805276 171805516 -55719062 - LTR8 LTR ERV1 -434 257 1 16653 104 45 24 chr3 171805516 171808611 -55715967 + MER4C-int LTR ERV1 1862 6585 -13 28 0 0 0 chr3 171808613 171808641 -55715937 + AT_rich Low_complexity Low_complexity 1 28 0 2236 169 44 20 chr3 171808690 171809140 -55715438 + MER4C LTR ERV1 1 461 -4 929 138 7 14 chr3 171809171 171809316 -55715262 - MLT1A1 LTR MaLR 0 365 222 2802 89 24 21 chr3 171809436 171809929 -55714649 + MER4C-int LTR ERV1 6047 6585 -13 28 0 0 0 chr3 171809931 171809959 -55714619 + AT_rich Low_complexity Low_complexity 1 28 0 2987 134 36 2 chr3 171810008 171810456 -55714122 + MER4C LTR ERV1 1 463 -2 2423 169 3 6 chr3 171810484 171810850 -55713728 - MLT1A1 LTR MaLR 0 365 1 228 165 13 101 chr3 171811074 171811153 -55713425 + AluSg SINE Alu 12 83 -217 453 176 0 0 chr3 171811215 171811357 -55713221 + T-rich Low_complexity Low_complexity 1 142 0 190 0 0 62 chr3 171811541 171811573 -55713005 + (TA)n Simple_repeat Simple_repeat 2 31 0 636 283 98 61 chr3 171811587 171812967 -55711611 + L1MC4a LINE L1 4501 5384 -762 1091 245 107 0 chr3 171813212 171813522 -55711056 + L2 LINE L2 1817 2159 -1155 1165 201 180 62 chr3 171813531 171814130 -55710448 + L2 LINE L2 2680 3311 -2 524 255 64 20 chr3 171814347 171814519 -55710059 - MIR SINE MIR -66 196 20 1561 170 0 0 chr3 171814844 171815115 -55709463 + AluJb SINE Alu 38 308 0 610 369 64 19 chr3 171815306 171815772 -55708806 + HAL1 LINE L1 795 1281 -1226 419 311 3 78 chr3 171815805 171815860 -55708718 + HAL1 LINE L1 1514 1572 -935 1453 78 0 88 chr3 171815860 171816077 -55708501 - AluY SINE Alu -19 292 95 419 311 3 78 chr3 171816077 171816314 -55708264 + HAL1 LINE L1 1572 1784 -723 2364 101 0 0 chr3 171816363 171816659 -55707919 - AluSg SINE Alu -13 297 2 21 36 0 0 chr3 171817763 171817791 -55706787 + AT_rich Low_complexity Low_complexity 1 28 0 768 181 49 83 chr3 171818003 171818046 -55706532 + MER20 DNA MER1_type 19 62 -157 2661 46 0 0 chr3 171818046 171818351 -55706227 - AluY SINE Alu -6 305 1 768 181 49 83 chr3 171818351 171818512 -55706066 + MER20 DNA MER1_type 62 216 -3 246 32 0 0 chr3 171818665 171818696 -55705882 + (TG)n Simple_repeat Simple_repeat 1 31 0 392 147 32 11 chr3 171818696 171818791 -55705787 + GA-rich Low_complexity Low_complexity 2 98 0 1000 94 222 6 chr3 171818841 171819012 -55705566 + AluJo SINE Alu 86 293 -19 228 154 0 0 chr3 171819476 171819528 -55705050 + CT-rich Low_complexity Low_complexity 1 52 0 192 97 0 0 chr3 171819580 171819611 -55704967 + (TCC)n Simple_repeat Simple_repeat 2 32 0 242 163 61 0 chr3 171820085 171820134 -55704444 - MER58A DNA MER1_type -33 74 23 926 204 0 0 chr3 171820417 171820584 -55703994 - AluJo SINE Alu -16 296 130 504 0 0 0 chr3 171820585 171820641 -55703937 + (TTATA)n Simple_repeat Simple_repeat 4 59 0 2264 81 0 0 chr3 171820643 171820928 -55703650 - AluY SINE Alu -26 285 1 1360 107 141 67 chr3 171820937 171821207 -55703371 - AluJo SINE Alu -22 290 1 273 255 174 40 chr3 171821877 171822026 -55702552 + MIR SINE MIR 29 197 -65 784 173 39 0 chr3 171822046 171822173 -55702405 - AluJo SINE Alu -170 132 1 21 0 0 0 chr3 171822195 171822216 -55702362 + AT_rich Low_complexity Low_complexity 1 21 0 1816 158 48 45 chr3 171822270 171822466 -55702112 - THE1C LTR MaLR 0 375 176 2373 80 3 7 chr3 171822466 171822767 -55701811 - AluY SINE Alu -11 300 1 1816 158 48 45 chr3 171822767 171822944 -55701634 - THE1C LTR MaLR -199 176 1 3349 133 11 17 chr3 171823044 171823175 -55701403 - L1MA6 LINE L1 0 6300 6170 2555 92 83 11 chr3 171823175 171823523 -55701055 - THE1C LTR MaLR 0 375 3 3349 133 11 17 chr3 171823523 171823917 -55700661 - L1MA6 LINE L1 -130 6170 5778 1780 176 3 0 chr3 171823917 171824201 -55700377 - AluJo SINE Alu -17 295 11 3726 139 5 2 chr3 171824226 171824837 -55699741 - L1MA6 LINE L1 -841 5305 4693 825 168 0 0 chr3 171825104 171825235 -55699343 + FRAM SINE Alu 1 131 -45 1657 164 37 84 chr3 171826074 171826457 -55698121 + MLT1A1 LTR MaLR 1 365 0 661 266 83 117 chr3 171826583 171827079 -55697499 - MLT1J LTR MaLR -30 481 3 373 191 0 0 chr3 171827230 171827293 -55697285 - MER5A DNA MER1_type -2 187 125 1911 158 3 16 chr3 171827293 171827609 -55696969 + AluSx SINE Alu 1 312 0 23669 94 6 57 chr3 171827614 171832377 -55692201 + L1P3 LINE L1 5 4562 -1899 3814 34 2 0 chr3 171832375 171832819 -55691759 + L1PA7 LINE L1 5458 5902 -252 * 187 54 54 0 chr3 171832852 171832889 -55691689 + (TAGA)n Simple_repeat Simple_repeat 4 42 0 * 570 15 0 0 chr3 171832888 171832955 -55691623 + (CA)n Simple_repeat Simple_repeat 2 68 0 522 200 0 140 chr3 171832962 171832991 -55691587 - MER5A DNA MER1_type -55 134 103 1512 166 21 21 chr3 171832991 171833281 -55691297 - AluJo SINE Alu -20 292 3 522 200 0 140 chr3 171833281 171833328 -55691250 - MER5A DNA MER1_type -86 103 86 2497 69 0 19 chr3 171833328 171833645 -55690933 - AluY SINE Alu 0 311 1 522 200 0 140 chr3 171833645 171833717 -55690861 - MER5A DNA MER1_type -103 86 6 2374 68 3 10 chr3 171834162 171834470 -55690108 - AluY SINE Alu -5 306 1 2326 107 3 0 chr3 171834578 171834887 -55689691 + AluSp SINE Alu 1 310 -3 2021 185 16 35 chr3 171834921 171835347 -55689231 + L1MB8 LINE L1 5755 6172 -6 2688 109 19 6 chr3 171835860 171836219 -55688359 - THE1B LTR MaLR 0 364 1 328 180 57 131 chr3 171836686 171836731 -55687847 + MIR SINE MIR 150 197 -65 1137 206 8 0 chr3 171836731 171836978 -55687600 - L1MA4 LINE L1 0 6300 6052 328 180 57 131 chr3 171836978 171837054 -55687524 + MIR SINE MIR 197 262 0 230 298 61 26 chr3 171837723 171837837 -55686741 + L2 LINE L2 3146 3263 -9 1687 151 50 7 chr3 171838161 171838439 -55686139 - AluJb SINE Alu -22 290 1 435 289 6 18 chr3 171838457 171838623 -55685955 - L1ME LINE L1 -346 5775 5612 238 333 108 0 chr3 171838682 171838793 -55685785 + MARNA DNA Mariner 100 222 -364 992 93 23 12 chr3 171839055 171839227 -55685351 + (TTTC)n Simple_repeat Simple_repeat 1 174 0 802 181 29 7 chr3 171839234 171839398 -55685180 - FLAM_C SINE Alu 0 169 3 221 0 35 0 chr3 171839626 171839655 -55684923 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 643 237 54 83 chr3 171840064 171840283 -55684295 + LTR16C LTR ERVL 209 420 -71 2155 86 0 86 chr3 171840283 171840620 -55683958 - AluSx SINE Alu -3 309 2 643 237 54 83 chr3 171840620 171840678 -55683900 + LTR16C LTR ERVL 420 478 -13 439 321 58 82 chr3 171840811 171841141 -55683437 - L2 LINE L2 -85 3187 2866 30 0 0 0 chr3 171841692 171841722 -55682856 + AT_rich Low_complexity Low_complexity 1 30 0 1741 140 49 3 chr3 171841722 171842007 -55682571 - AluJo SINE Alu -14 298 1 538 273 91 29 chr3 171842376 171842589 -55681989 + MIR SINE MIR 25 247 -15 773 301 119 16 chr3 171842593 171843045 -55681533 - LTR33 LTR ERVL -1 520 22 1980 112 18 0 chr3 171843168 171843444 -55681134 + AluSq SINE Alu 1 281 -32 216 292 198 31 chr3 171843925 171844090 -55680488 - MIR SINE MIR -32 230 27 2253 108 0 0 chr3 171844090 171844386 -55680192 - AluSx SINE Alu -16 296 1 216 292 198 31 chr3 171844386 171844412 -55680166 - MIR SINE MIR -235 27 7 756 226 23 0 chr3 171844449 171844626 -55679952 + MER113 DNA MER1_type? 43 223 -298 2069 197 44 82 chr3 171844783 171845402 -55679176 + MER63C DNA MER1_type 1 595 -335 659 189 68 0 chr3 171845433 171845565 -55679013 + MER63C DNA MER1_type 792 932 0 1091 253 96 64 chr3 171845709 171846074 -55678504 + L2 LINE L2 2828 3213 -100 1897 155 0 19 chr3 171846074 171846391 -55678187 - AluSx SINE Alu -1 311 1 1091 253 96 64 chr3 171846391 171846496 -55678082 + L2 LINE L2 3213 3313 0 336 146 87 87 chr3 171846554 171846657 -55677921 - L1MC5 LINE L1 -442 7519 7417 643 167 56 0 chr3 171846863 171846971 -55677607 - L1M4 LINE L1 -1177 4969 4856 2089 215 107 114 chr3 171847127 171847418 -55677160 + L1MC5 LINE L1 6693 6985 -976 2273 112 0 0 chr3 171847418 171847712 -55676866 - AluSx SINE Alu -18 294 1 2089 215 107 114 chr3 171847712 171848640 -55675938 + L1MC5 LINE L1 6985 7903 -58 2279 101 3 0 chr3 171848675 171848971 -55675607 + AluSx SINE Alu 1 297 -15 303 248 157 0 chr3 171848971 171849092 -55675486 + HAL1b LINE L1 774 913 -435 588 275 24 30 chr3 171850028 171850195 -55674383 + MIR SINE MIR 23 188 -74 1495 266 116 88 chr3 171850890 171852224 -55672354 + L2 LINE L2 1591 2961 -353 348 258 167 15 chr3 171852325 171852457 -55672121 - MER5B DNA MER1_type 0 178 27 728 186 154 0 chr3 171852489 171852645 -55671933 - MER5A DNA MER1_type 0 189 10 739 240 88 42 chr3 171852863 171853080 -55671498 + MIR SINE MIR 15 241 -21 194 156 133 0 chr3 171853461 171853506 -55671072 - L2 LINE L2 0 3313 3263 217 249 220 35 chr3 171853602 171853775 -55670803 - L2 LINE L2 -553 2761 2557 191 295 29 79 chr3 171853896 171854035 -55670543 + MIR3 SINE MIR 74 205 -3 270 287 11 11 chr3 171854472 171854559 -55670019 - MIR SINE MIR -57 151 65 25 31 0 0 chr3 171855109 171855141 -55669437 + AT_rich Low_complexity Low_complexity 1 32 0 360 350 0 0 chr3 171855512 171855612 -55668966 + MIR SINE MIR 20 119 -89 1551 127 160 0 chr3 171856167 171856435 -55668143 + AluSx SINE Alu 1 311 -1 191 143 0 29 chr3 171856818 171856853 -55667725 + L2 LINE L2 3262 3295 -18 196 283 0 0 chr3 171857325 171857378 -55667200 - MER5A DNA MER1_type 0 189 137 342 0 0 0 chr3 171861405 171861443 -55663135 + (CA)n Simple_repeat Simple_repeat 2 39 0 2421 69 0 0 chr3 171861656 171861959 -55662619 - AluY SINE Alu -8 303 1 1847 129 3 7 chr3 171862277 171862589 -55661989 + AluSx SINE Alu 1 311 0 1231 136 9 57 chr3 171862639 171862867 -55661711 - MER20 DNA MER1_type -2 217 1 2177 82 0 70 chr3 171863822 171864151 -55660427 + AluSq SINE Alu 1 306 -7 1263 201 76 40 chr3 171864980 171865377 -55659201 + L1MC4 LINE L1 7632 8042 0 1446 176 3 34 chr3 171865380 171865676 -55658902 + AluJb SINE Alu 1 287 -25 697 212 0 8 chr3 171866748 171866880 -55657698 - FLAM_C SINE Alu -1 132 2 1853 114 38 10 chr3 171867313 171867602 -55656976 + AluSx SINE Alu 1 297 -15 756 190 0 29 chr3 171867885 171868022 -55656556 - FLAM_C SINE Alu 0 133 1 2104 97 0 17 chr3 171868490 171868790 -55655788 + AluSx SINE Alu 1 295 -17 445 145 89 113 chr3 171868802 171868926 -55655652 - MER53 DNA DNA -68 121 1 566 236 98 116 chr3 171869567 171869678 -55654900 + L1ME4a LINE L1 5478 5590 -531 1827 169 10 0 chr3 171869678 171869979 -55654599 + AluJb SINE Alu 1 304 -8 566 236 98 116 chr3 171869979 171870308 -55654270 + L1ME4a LINE L1 5590 5907 -214 2682 110 54 5 chr3 171870308 171870716 -55653862 - MSTA LTR MaLR 0 428 1 566 236 98 116 chr3 171870716 171870879 -55653699 + L1ME4a LINE L1 5907 6071 -50 199 279 35 58 chr3 171871191 171871277 -55653301 - MIR SINE MIR -17 245 162 1913 138 0 41 chr3 171871485 171871668 -55652910 - AluSg SINE Alu -4 306 140 2298 78 7 7 chr3 171871668 171871977 -55652601 - AluSp SINE Alu -3 310 2 1913 138 0 41 chr3 171871977 171872112 -55652466 - AluSg SINE Alu -170 140 1 352 255 128 85 chr3 171873283 171873424 -55651154 - MIR SINE MIR -71 137 3 299 330 68 17 chr3 171873424 171873539 -55651039 - MIR3 SINE MIR -13 195 75 541 272 50 78 chr3 171873725 171873861 -55650717 + Charlie8 DNA MER1_type 1 126 -215 892 142 0 8 chr3 171873861 171873995 -55650583 + FLAM_C SINE Alu 1 133 0 541 272 50 78 chr3 171873995 171874141 -55650437 + Charlie8 DNA MER1_type 126 275 -66 186 43 0 0 chr3 171874188 171874211 -55650367 + (TCTCC)n Simple_repeat Simple_repeat 2 24 0 2226 90 0 13 chr3 171874732 171874899 -55649679 - AluSx SINE Alu -11 301 138 2300 94 0 7 chr3 171874899 171875207 -55649371 - AluSp SINE Alu -7 306 1 2226 90 0 13 chr3 171875207 171875340 -55649238 - AluSx SINE Alu -174 138 5 330 221 21 95 chr3 171875783 171875878 -55648700 + MIR3 SINE MIR 71 158 -50 344 211 44 33 chr3 171875951 171876041 -55648537 - MIR3 SINE MIR -11 197 107 347 285 31 39 chr3 171877516 171877646 -55646932 + L1ME4a LINE L1 5768 5896 -225 33 0 0 0 chr3 171878813 171878846 -55645732 + GC_rich Low_complexity Low_complexity 1 33 0 232 161 16 48 chr3 171879663 171879725 -55644853 + G-rich Low_complexity Low_complexity 3 62 0 437 239 29 22 chr3 171880427 171880565 -55644013 + MIR SINE MIR 123 261 -1 283 264 248 50 chr3 171880737 171880858 -55643720 - L2 LINE L2 0 3313 3169 539 246 174 7 chr3 171881179 171881387 -55643191 - MIR SINE MIR 0 262 19 1299 142 66 0 chr3 171882985 171883211 -55641367 - AluJb SINE Alu -15 297 57 472 266 129 7 chr3 171883311 171883450 -55641128 - MIR SINE MIR -21 241 86 1456 206 92 104 chr3 171883454 171883638 -55640940 + MLT1F1 LTR MaLR 18 203 -364 1817 211 33 6 chr3 171883638 171884002 -55640576 - MLT1A2 LTR MaLR 0 374 1 1456 206 92 104 chr3 171884002 171884278 -55640300 + MLT1F1 LTR MaLR 203 498 -69 1038 194 0 0 chr3 171884278 171884453 -55640125 - FAM SINE Alu 0 175 1 1456 206 92 104 chr3 171884453 171884523 -55640055 + MLT1F1 LTR MaLR 498 567 0 236 213 125 0 chr3 171884761 171884841 -55639737 + L1MC/D LINE L1 5729 5818 -1990 2016 127 0 3 chr3 171884880 171885188 -55639390 + AluSx SINE Alu 1 307 -5 43 0 0 0 chr3 171885639 171885682 -55638896 + AT_rich Low_complexity Low_complexity 1 43 0 2336 93 3 0 chr3 171885987 171886299 -55638279 - AluSp SINE Alu 0 313 1 656 243 91 19 chr3 171886300 171886510 -55638068 - MIR SINE MIR -36 226 2 1591 181 7 3 chr3 171888176 171888463 -55636115 - AluJo SINE Alu -24 288 1 847 198 0 0 chr3 171888906 171889063 -55635515 - AluJb SINE Alu -25 287 131 276 240 125 19 chr3 171889064 171889168 -55635410 + MIR SINE MIR 40 154 -108 1802 157 4 0 chr3 171889249 171889529 -55635049 - AluSx SINE Alu -31 281 1 484 250 7 61 chr3 171889656 171889804 -55634774 - MER91B DNA MER1_type -50 140 1 260 164 194 0 chr3 171889806 171889873 -55634705 + MLT1K LTR MaLR 164 243 -345 360 292 0 42 chr3 171889879 171890000 -55634578 + LTR40c LTR ERVL 178 339 -180 4044 171 111 27 chr3 171890000 171891487 -55633091 - MER52A LTR ERV1 0 1755 1 557 248 0 83 chr3 171891489 171891646 -55632932 + LTR40a LTR ERVL 340 483 -36 555 184 40 0 chr3 171891823 171891948 -55632630 - L1MA10 LINE L1 0 6334 6205 1496 231 44 62 chr3 171891979 171892582 -55631996 - L1MC5 LINE L1 -33 7928 7395 1273 162 86 13 chr3 171892582 171892806 -55631772 + MER33 DNA MER1_type 1 254 -2331 2230 87 7 3 chr3 171892806 171893106 -55631472 - AluSg SINE Alu -9 301 1 1273 162 86 13 chr3 171893106 171893183 -55631395 + MER33 DNA MER1_type 254 324 0 1496 231 44 62 chr3 171893183 171893316 -55631262 - L1MC5 LINE L1 -566 7395 7261 2199 229 45 6 chr3 171893339 171893832 -55630746 + MER90 LTR ERV1 72 583 -31 369 111 0 32 chr3 171894046 171894109 -55630469 - MLT1C LTR MaLR 0 467 407 2160 83 0 21 chr3 171894114 171894403 -55630175 + AluSg SINE Alu 1 283 -27 400 40 0 0 chr3 171894403 171894453 -55630125 - MLT2A2 LTR ERVL -403 50 1 198 0 0 0 chr3 171894539 171894561 -55630017 + (A)n Simple_repeat Simple_repeat 1 22 0 277 324 20 10 chr3 171896177 171896279 -55628299 - MIR SINE MIR -123 139 37 231 250 198 38 chr3 171897045 171897216 -55627362 - MIR3 SINE MIR -7 201 2 858 307 178 49 chr3 171897240 171898032 -55626546 - L2 LINE L2 -34 3238 2550 2209 146 12 47 chr3 171898032 171898436 -55626142 + MLT1B LTR MaLR 1 390 0 858 307 178 49 chr3 171898436 171898777 -55625801 - L2 LINE L2 -722 2550 2254 1956 143 42 68 chr3 171898777 171899161 -55625417 + MLT1A2 LTR MaLR 1 374 0 858 307 178 49 chr3 171899161 171899676 -55624902 - L2 LINE L2 -1018 2254 1336 302 309 47 47 chr3 171899791 171899922 -55624656 - MIR SINE MIR -67 141 22 560 225 27 0 chr3 171901046 171901157 -55623421 + MER81 DNA DNA 1 114 0 3459 113 74 0 chr3 171901158 171901697 -55622881 - L1MC3 LINE L1 -1 7784 7206 1904 151 0 0 chr3 171901697 171902001 -55622577 - AluJb SINE Alu -8 304 1 288 292 11 11 chr3 171902039 171902128 -55622450 - MLT1F1 LTR MaLR -444 123 35 323 165 273 16 chr3 171902134 171902184 -55622394 - L1MC3 LINE L1 -691 7094 7058 195 100 0 0 chr3 171902184 171902214 -55622364 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 323 165 273 16 chr3 171902214 171902284 -55622294 - L1MC3 LINE L1 -727 7058 6943 315 71 0 0 chr3 171902280 171902322 -55622256 - L1M LINE L1 -935 5424 5383 * 1595 198 0 8 chr3 171902325 171902593 -55621985 + Tigger7 DNA MER2_type 1 266 -284 620 163 10 0 chr3 171902591 171902689 -55621889 + Tigger7 DNA MER2_type 2389 2487 0 * 478 111 0 0 chr3 171902689 171902761 -55621817 - L1M LINE L1 -963 5381 5310 2054 124 0 0 chr3 171902765 171903055 -55621523 + AluSc SINE Alu 1 290 -19 33 25 0 0 chr3 171903549 171903589 -55620989 + AT_rich Low_complexity Low_complexity 1 40 0 1329 128 0 55 chr3 171903632 171903867 -55620711 + AluJo SINE Alu 1 222 -90 311 268 76 0 chr3 171904697 171904815 -55619763 - MER117 DNA MER1_type -26 171 47 677 280 70 53 chr3 171905155 171905697 -55618881 + L1MC4a LINE L1 5379 5929 -1879 315 71 0 0 chr3 171905811 171905853 -55618725 + (TG)n Simple_repeat Simple_repeat 2 43 0 25 0 0 0 chr3 171905909 171905934 -55618644 + AT_rich Low_complexity Low_complexity 1 25 0 286 242 21 21 chr3 171905935 171906030 -55618548 - MIR SINE MIR -74 134 40 1555 228 36 22 chr3 171906749 171907108 -55617470 + MLT1D LTR MaLR 1 364 -141 238 269 79 58 chr3 171907184 171907411 -55617167 - MLT1K LTR MaLR -162 426 179 465 321 25 0 chr3 171907847 171908006 -55616572 - MER117 DNA MER1_type -29 168 6 191 386 0 0 chr3 171908042 171908112 -55616466 - L3 LINE CR1 -605 972 903 1547 185 109 3 chr3 171908913 171909243 -55615335 - MLT1A1 LTR MaLR 0 365 1 675 154 36 154 chr3 171909505 171909591 -55614987 + MLT1A1 LTR MaLR 1 96 -269 1330 131 13 9 chr3 171909591 171909820 -55614758 + L1MA3 LINE L1 6076 6305 0 675 154 36 154 chr3 171909820 171909953 -55614625 + MLT1A1 LTR MaLR 96 194 -171 434 276 128 23 chr3 171911466 171911500 -55613078 + L1MC4 LINE L1 7749 7778 -264 1022 226 43 87 chr3 171911500 171911915 -55612663 - MLT2C1 LTR ERVL 0 397 1 434 276 128 23 chr3 171911915 171912145 -55612433 + L1MC4 LINE L1 7778 8041 -1 219 244 0 93 chr3 171912146 171912232 -55612346 + L2 LINE L2 3190 3267 -5 2080 142 0 0 chr3 171912375 171912684 -55611894 - AluSx SINE Alu -3 309 1 24 0 0 0 chr3 171912692 171912716 -55611862 + AT_rich Low_complexity Low_complexity 1 24 0 1069 107 0 17 chr3 171912716 171912894 -55611684 + (TTC)n Simple_repeat Simple_repeat 3 177 0 735 138 46 0 chr3 171912897 171913049 -55611529 + CT-rich Low_complexity Low_complexity 3 161 0 1694 156 4 18 chr3 171913049 171913324 -55611254 - AluSx SINE Alu -39 273 3 631 150 8 75 chr3 171913327 171913460 -55611118 - AluJo/FLAM SINE Alu -174 128 5 303 202 83 64 chr3 171913561 171913670 -55610908 + MIR SINE MIR 79 189 -73 630 194 125 7 chr3 171913740 171913884 -55610694 + MER104 DNA Tc2 17 177 -3 257 296 197 26 chr3 171913887 171914039 -55610539 + MIR SINE MIR 78 255 -7 21 0 0 0 chr3 171914934 171914955 -55609623 + AT_rich Low_complexity Low_complexity 1 21 0 492 174 72 22 chr3 171915128 171915266 -55609312 - L1MC4a LINE L1 0 7808 7664 602 247 47 21 chr3 171915448 171915606 -55608972 - L1MC4a LINE L1 -1868 5940 5775 2258 126 0 0 chr3 171915606 171915915 -55608663 - AluSx SINE Alu -3 309 1 602 247 47 21 chr3 171915915 171915946 -55608632 - L1MC4a LINE L1 -2033 5775 5746 1129 174 57 9 chr3 171916753 171916965 -55607613 - MLT1D LTR MaLR -283 222 1 602 192 12 42 chr3 171917419 171917586 -55606992 - Charlie2 DNA MER1_type -16 2846 2685 785 161 8 0 chr3 171917595 171917719 -55606859 + AluJb SINE Alu 7 131 -181 1869 199 93 51 chr3 171917724 171918388 -55606190 - Charlie2 DNA MER1_type -162 2700 2009 248 228 140 61 chr3 171918357 171918471 -55606107 - Charlie2a DNA MER1_type -1389 1473 1351 * 2497 159 37 31 chr3 171918855 171919288 -55605290 - LTR32 LTR ERVL -5 466 28 1561 151 139 27 chr3 171919288 171919625 -55604953 + THE1C LTR MaLR 1 375 0 2497 159 37 31 chr3 171919625 171919645 -55604933 - LTR32 LTR ERVL -443 28 10 2410 214 154 2 chr3 171919673 171920238 -55604340 + MLT2F LTR ERVL 5 655 -8 1890 232 130 11 chr3 171920238 171920961 -55603617 - Charlie2a DNA MER1_type -1513 1349 541 311 266 16 24 chr3 171920969 171921093 -55603485 + L1MC/D LINE L1 5317 5439 -2369 351 265 201 20 chr3 171921093 171921297 -55603281 - L2 LINE L2 -2679 635 395 594 259 109 5 chr3 171921306 171921499 -55603079 + L1MC/D LINE L1 5400 5612 -2196 1441 181 23 109 chr3 171923375 171923609 -55600969 + MLT1A1 LTR MaLR 13 203 -162 2131 114 0 0 chr3 171923609 171923899 -55600679 - AluSq SINE Alu -3 310 21 1441 181 23 109 chr3 171923899 171924050 -55600528 + MLT1A1 LTR MaLR 203 365 0 599 275 55 32 chr3 171926154 171926372 -55598206 - MLT1J LTR MaLR -288 223 1 1711 98 0 0 chr3 171926516 171926730 -55597848 + AluSg/x SINE Alu 85 298 -14 261 290 43 0 chr3 171926799 171926892 -55597686 - L2 LINE L2 -218 3054 2958 2124 122 0 11 chr3 171927942 171928254 -55596324 + AluSx SINE Alu 1 309 0 2791 183 37 22 chr3 171928370 171928917 -55595661 - LTR38 LTR ERV1 -1 555 1 1735 189 45 15 chr3 171929415 171930106 -55594472 - MER49 LTR ERV1 -170 753 4 1422 210 60 58 chr3 171930109 171930490 -55594088 - MER49-int LTR ERV1 -1 6757 6376 752 166 110 7 chr3 171930483 171930628 -55593950 - MER49-int LTR ERV1 -615 6143 5984 * 2545 57 0 0 chr3 171930670 171930966 -55593612 + AluY SINE Alu 1 296 -15 23 0 0 0 chr3 171931104 171931127 -55593451 + AT_rich Low_complexity Low_complexity 1 23 0 729 147 33 114 chr3 171931142 171931326 -55593252 - MER4-int LTR ERV1 -4166 3954 3786 1914 166 0 13 chr3 171931426 171931728 -55592850 - AluJb SINE Alu -14 298 1 1319 164 46 53 chr3 171931769 171932185 -55592393 - MER4-int LTR ERV1 -2162 4169 3731 11304 35 1 1 chr3 171932220 171934318 -55590260 - L1PA4 LINE L1 -3 6152 4057 4190 143 47 74 chr3 171934318 171935301 -55589277 - MER4-int LTR ERV1 -6480 1640 685 225 248 55 28 chr3 171935325 171935470 -55589108 + L1ME4a LINE L1 5951 6099 -22 25 0 0 0 chr3 171935533 171935558 -55589020 + AT_rich Low_complexity Low_complexity 1 25 0 6695 69 19 38 chr3 171935558 171936530 -55588048 - SVA Other Other -1 1385 433 1330 89 16 93 chr3 171936545 171937127 -55587451 - SVA Other Other -520 866 433 5678 80 22 62 chr3 171937146 171937985 -55586593 - SVA Other Other -520 866 63 1587 5 0 0 chr3 171937985 171938188 -55586390 + (GGGAGA)n Simple_repeat Simple_repeat 1 203 0 5678 80 22 62 chr3 171938188 171938249 -55586329 - SVA Other Other -1323 63 1 335 88 0 18 chr3 171938249 171938306 -55586272 + (GGGAGA)n Simple_repeat Simple_repeat 2 57 0 23 0 0 0 chr3 171938350 171938373 -55586205 + AT_rich Low_complexity Low_complexity 1 23 0 202 125 0 25 chr3 171938397 171938437 -55586141 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 1777 212 52 46 chr3 171938987 171939487 -55585091 - MLT1D LTR MaLR -2 503 1 249 233 17 0 chr3 171940651 171940711 -55583867 + (CAATA)n Simple_repeat Simple_repeat 4 64 0 477 273 30 8 chr3 171941519 171941651 -55582927 - MIR SINE MIR -120 142 8 822 117 28 7 chr3 171941797 171941942 -55582636 - L1MA2 LINE L1 -120 6184 6037 22 0 0 0 chr3 171941948 171941970 -55582608 + AT_rich Low_complexity Low_complexity 1 22 0 1979 150 3 16 chr3 171942602 171942915 -55581663 + AluJb SINE Alu 1 309 -3 423 281 47 8 chr3 171942996 171943124 -55581454 + MIR SINE MIR 116 248 -14 266 0 0 29 chr3 171943320 171943355 -55581223 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1451 158 17 0 chr3 171943379 171943613 -55580965 - AluJo SINE Alu -31 281 44 5375 162 67 15 chr3 171943613 171944628 -55579950 - LTR38-int LTR ERV1 -664 1122 1 2824 173 25 34 chr3 171944628 171945189 -55579389 - LTR38 LTR ERV1 0 556 1 2632 7 0 3 chr3 171945195 171945477 -55579101 + AluYa5 SINE Alu 23 303 -8 219 203 58 43 chr3 171945777 171945846 -55578732 + CT-rich Low_complexity Low_complexity 4 73 0 1848 156 3 7 chr3 171945996 171946302 -55578276 + AluSx SINE Alu 3 307 0 1639 144 99 63 chr3 171946342 171946676 -55577902 - LTR18B LTR ERVL 0 614 269 428 189 28 3 chr3 171946680 171946817 -55577761 - HERVL18 LTR ERVL -3741 2306 2119 * 971 224 16 29 chr3 171946816 171947179 -55577399 - HERVL18 LTR ERVL -4237 1810 1388 269 191 0 0 chr3 171947166 171947213 -55577365 - HERVL18 LTR ERVL -5085 962 916 * 931 233 12 0 chr3 171947207 171947379 -55577199 - HERVL18 LTR ERVL -5381 666 493 * 1690 186 10 3 chr3 171947373 171947669 -55576909 - HERVL18 LTR ERVL -5749 298 1 2575 127 65 142 chr3 171947731 171948363 -55576215 - LTR18B LTR ERVL -31 583 1 180 0 0 0 chr3 171948516 171948536 -55576042 + (TG)n Simple_repeat Simple_repeat 1 20 0 873 123 4 15 chr3 171951829 171952090 -55572488 + (TTCC)n Simple_repeat Simple_repeat 1 257 0 551 221 8 8 chr3 171952621 171952748 -55571830 - L2 LINE L2 -6 3307 3181 312 91 0 0 chr3 171952748 171952792 -55571786 + (TGAA)n Simple_repeat Simple_repeat 3 46 0 249 284 116 40 chr3 171953138 171953322 -55571256 + MIR SINE MIR 9 206 -56 2001 144 115 35 chr3 171954242 171954704 -55569874 + MER4C-int LTR ERV1 4062 4361 -762 540 184 202 0 chr3 171954726 171954835 -55569743 - AluSq/x SINE Alu -180 132 2 896 135 6 41 chr3 171954837 171955007 -55569571 + MER4C-int LTR ERV1 5488 5651 -680 21530 168 35 29 chr3 171955084 171956791 -55567787 - L1PA13 LINE L1 -32 6780 5085 387 0 0 0 chr3 171956791 171956834 -55567744 + (TG)n Simple_repeat Simple_repeat 1 43 0 21530 168 35 29 chr3 171956834 171956906 -55567672 - L1PA13 LINE L1 -1727 5085 5015 2174 116 3 7 chr3 171956906 171957208 -55567370 - AluSc SINE Alu -8 301 1 21530 168 35 29 chr3 171957208 171958015 -55566563 - L1PA13 LINE L1 -1797 5015 4214 1925 133 3 76 chr3 171958015 171958345 -55566233 - AluSx SINE Alu -6 306 1 21530 168 35 29 chr3 171958345 171959519 -55565059 - L1PA13 LINE L1 -2598 4214 3049 2067 215 42 78 chr3 171959519 171960092 -55564486 - MLT2B3 LTR ERVL -2 552 1 21530 168 35 29 chr3 171960092 171962389 -55562189 - L1PA13 LINE L1 -3763 3049 704 4383 124 12 28 chr3 171962389 171963033 -55561545 + MER51A LTR ERV1 1 634 0 21530 168 35 29 chr3 171963033 171963742 -55560836 - L1PA13 LINE L1 -6108 704 1 3102 127 17 23 chr3 171963753 171964274 -55560304 + MER4C-int LTR ERV1 6081 6598 0 2724 81 91 17 chr3 171964278 171964686 -55559892 + MER4C LTR ERV1 1 438 -27 279 54 0 0 chr3 171965074 171965111 -55559467 + (TC)n Simple_repeat Simple_repeat 2 38 0 379 0 39 0 chr3 171965111 171965162 -55559416 + (CA)n Simple_repeat Simple_repeat 1 53 0 1871 234 119 43 chr3 171966372 171966954 -55557624 - MER57A-int LTR ERV1 -807 7009 6384 292 321 0 0 chr3 171966884 171966990 -55557588 - MER70-int LTR ERVL -805 4218 4113 * 418 193 0 60 chr3 171967194 171967277 -55557301 - MER57A-int LTR ERV1 -690 4181 4104 306 321 9 9 chr3 171967209 171967318 -55557260 - MER70-int LTR ERVL -1228 3795 3687 * 1389 259 31 35 chr3 171967315 171967936 -55556642 - MER57A-int LTR ERV1 -778 6205 2477 2586 191 11 26 chr3 171968112 171968645 -55555933 - MER57A-int LTR ERV1 -1712 5825 5301 1096 189 78 101 chr3 171968639 171969575 -55555003 - MER57A-int LTR ERV1 -2253 2683 1755 * 794 265 66 21 chr3 171969573 171969860 -55554718 - MER57A-int LTR ERV1 -2291 4467 4168 * 23 0 0 0 chr3 171969860 171969883 -55554695 + AT_rich Low_complexity Low_complexity 1 23 0 797 172 0 0 chr3 171969883 171969999 -55554579 - FLAM_C SINE Alu -25 118 3 343 309 20 34 chr3 171970073 171970222 -55554356 - MER34C LTR ERV1 -158 427 281 1450 177 90 11 chr3 171970427 171970704 -55553874 - AluJo SINE Alu -11 301 3 2324 148 11 21 chr3 171971201 171971578 -55553000 + THE1C LTR MaLR 3 375 0 385 295 32 0 chr3 171971742 171971837 -55552741 - MER57A-int LTR ERV1 -7210 327 230 597 289 78 18 chr3 171971837 171972055 -55552523 - MER57A-int LTR ERV1 -4156 2175 1945 456 129 0 0 chr3 171972083 171972153 -55552425 - LTR54 LTR ERV1 0 510 441 811 211 179 5 chr3 171972153 171972343 -55552235 - MER57A-int LTR ERV1 -7312 225 3 1896 195 12 81 chr3 171972347 171972581 -55551997 - MER57A LTR ERV1 -1 402 210 2358 89 0 3 chr3 171972581 171972884 -55551694 + AluY SINE Alu 1 302 -9 1896 195 12 81 chr3 171972884 171973079 -55551499 - MER57A LTR ERV1 -193 210 3 461 158 12 0 chr3 171973086 171973168 -55551410 - L1M4 LINE L1 -700 5484 5402 699 203 14 7 chr3 171973179 171973317 -55551261 + MER70B LTR ERVL 24 162 -416 * 2479 201 47 2 chr3 171973313 171973781 -55550797 + MER70B LTR ERVL 90 578 0 2702 204 36 2 chr3 171973785 171974373 -55550205 - L1M4 LINE L1 -743 5403 4796 2245 248 29 9 chr3 171974394 171974974 -55549604 - L1ME3A LINE L1 -7 6163 5574 516 186 129 0 chr3 171974976 171975116 -55549462 + L1ME LINE L1 5148 5305 -841 527 160 0 53 chr3 171975120 171975214 -55549364 + FLAM_A SINE Alu 42 130 -12 4173 73 6 0 chr3 171975221 171975743 -55548835 + LTR17 LTR ERV1 256 780 0 48564 55 19 3 chr3 171975743 171981666 -55542912 + HERV17 LTR ERV1 1 6019 -2607 294 77 0 0 chr3 171981659 171981698 -55542880 + HERV17 LTR ERV1 7510 7548 -1078 * 2487 51 0 0 chr3 171981688 171981980 -55542598 + HERV17 LTR ERV1 8335 8626 0 2708 42 0 0 chr3 171981980 171982290 -55542288 + LTR17 LTR ERV1 1 310 -470 542 222 84 34 chr3 171982290 171982560 -55542018 + L1ME LINE L1 5276 5562 -608 1039 324 94 25 chr3 171983291 171983800 -55540778 + MLT1K LTR MaLR 16 559 -29 3646 165 79 4 chr3 171984151 171984871 -55539707 + Charlie1 DNA MER1_type 1987 2760 -1 661 279 141 74 chr3 171984874 171984937 -55539641 - L2 LINE L2 -119 3194 3137 2348 124 19 40 chr3 171984937 171985145 -55539433 - THE1B LTR MaLR 0 364 166 2262 103 3 0 chr3 171985145 171985446 -55539132 + AluSp SINE Alu 1 302 -11 2348 124 19 40 chr3 171985446 171985609 -55538969 - THE1B LTR MaLR -198 166 1 661 279 141 74 chr3 171985609 171986245 -55538333 - L2 LINE L2 -176 3137 2449 297 0 0 0 chr3 171986461 171986494 -55538084 + (TG)n Simple_repeat Simple_repeat 1 33 0 2390 77 0 7 chr3 171986937 171987247 -55537331 - AluSg1 SINE Alu -1 308 1 840 290 166 52 chr3 171987807 171988656 -55535922 + L2 LINE L2 2015 2960 -354 195 125 31 0 chr3 171988899 171988931 -55535647 + L2 LINE L2 3205 3237 -35 2061 122 10 10 chr3 171988953 171989264 -55535314 + AluSx SINE Alu 1 311 -1 207 0 0 0 chr3 171989267 171989290 -55535288 + (TGAA)n Simple_repeat Simple_repeat 1 23 0 2364 54 7 0 chr3 171989786 171990101 -55534477 - AluY SINE Alu 0 317 1 281 189 40 14 chr3 171990473 171990547 -55534031 + MLT1L LTR MaLR 23 98 -517 25 0 0 0 chr3 171991285 171991310 -55533268 + AT_rich Low_complexity Low_complexity 1 25 0 2002 119 18 4 chr3 171992533 171992811 -55531767 + AluSx SINE Alu 1 282 -30 264 324 46 0 chr3 171993017 171993125 -55531453 + MIR SINE MIR 118 230 -32 283 203 40 40 chr3 171993623 171993697 -55530881 + L2 LINE L2 3186 3259 -13 1740 176 3 0 chr3 171994972 171995256 -55529322 - AluJb SINE Alu -3 309 25 304 301 34 56 chr3 171998900 171999146 -55525432 + MIR SINE MIR 3 241 -21 1182 182 28 5 chr3 172000228 172000442 -55524136 + MER20 DNA MER1_type 1 219 0 395 253 40 0 chr3 172000450 172000549 -55524029 + MER5B DNA MER1_type 1 103 -75 816 192 66 42 chr3 172000556 172000723 -55523855 - MER45A DNA AcHobo -7 171 1 392 228 13 0 chr3 172000724 172000803 -55523775 - MER5B DNA MER1_type -98 80 1 282 296 64 16 chr3 172001117 172001242 -55523336 - MIR3 SINE MIR -69 139 9 270 0 0 0 chr3 172001276 172001306 -55523272 + (TG)n Simple_repeat Simple_repeat 1 30 0 330 297 0 0 chr3 172001508 172001619 -55522959 - MER113 DNA MER1_type? -410 111 1 2089 116 10 3 chr3 172002068 172002361 -55522217 + AluSx SINE Alu 1 295 -17 935 100 0 50 chr3 172002456 172002596 -55521982 + FLAM_C SINE Alu 1 133 0 282 116 0 0 chr3 172003516 172003559 -55521019 + (TA)n Simple_repeat Simple_repeat 1 43 0 22 56 0 0 chr3 172003635 172003671 -55520907 + AT_rich Low_complexity Low_complexity 1 36 0 189 358 18 9 chr3 172005684 172005793 -55518785 + L2 LINE L2 2973 3082 -190 193 295 93 54 chr3 172005870 172005999 -55518579 + L2 LINE L2 3125 3258 -14 2235 163 63 24 chr3 172007451 172007873 -55516705 - MLT1D LTR MaLR 0 505 62 2890 175 30 6 chr3 172007873 172008410 -55516168 - MER44D DNA MER2_type 0 605 1 2235 163 63 24 chr3 172008410 172008448 -55516130 - MLT1D LTR MaLR -443 62 27 641 232 49 38 chr3 172008461 172008646 -55515932 - Charlie8 DNA MER1_type -2185 232 46 1566 199 72 50 chr3 172008669 172008795 -55515783 - MLT1C LTR MaLR 0 467 345 2399 61 3 3 chr3 172008795 172009091 -55515487 + AluY SINE Alu 2 297 -14 1566 199 72 50 chr3 172009091 172009421 -55515157 - MLT1C LTR MaLR -122 345 1 1855 213 46 46 chr3 172010061 172010564 -55514014 - MLT1D LTR MaLR -2 503 1 322 336 0 0 chr3 172012118 172012237 -55512341 - MIR SINE MIR -142 120 2 2305 118 0 0 chr3 172012445 172012750 -55511828 + AluSx SINE Alu 1 305 -7 1152 230 80 27 chr3 172013015 172013389 -55511189 + LTR16A1 LTR ERVL 50 443 -14 2013 92 55 38 chr3 172013628 172013920 -55510658 + AluSq SINE Alu 1 297 -16 1996 134 0 0 chr3 172014681 172014956 -55509622 - AluSx SINE Alu -37 275 1 467 232 116 32 chr3 172016025 172016215 -55508363 - MIR SINE MIR -8 254 49 6483 134 28 41 chr3 172016305 172016426 -55508152 - L1PBa LINE L1 -4364 2499 2378 1981 132 4 0 chr3 172016426 172016730 -55507848 - AluSx SINE Alu 0 305 1 6483 134 28 41 chr3 172016730 172017762 -55506816 - L1PBa LINE L1 -4485 2378 1360 592 237 174 66 chr3 172017763 172018159 -55506419 + MER113 DNA MER1_type? 76 514 -7 423 0 0 0 chr3 172018287 172018334 -55506244 + (TG)n Simple_repeat Simple_repeat 2 48 0 369 259 12 0 chr3 172018949 172019034 -55505544 + MIR SINE MIR 60 145 -117 273 350 0 0 chr3 172020038 172020118 -55504460 + L2 LINE L2 3184 3263 -9 278 402 8 8 chr3 172020128 172020250 -55504328 - MIR3 SINE MIR -49 159 38 744 249 38 44 chr3 172020250 172020716 -55503862 - LTR33 LTR ERVL 0 521 7 2133 130 10 0 chr3 172022478 172022786 -55501792 - AluSx SINE Alu -1 311 1 348 222 0 49 chr3 172023075 172023156 -55501422 - MER91A DNA MER1_type -119 77 1 11380 30 2 1 chr3 172025709 172027804 -55496774 - L1PA4 LINE L1 -3 6152 4057 4317 139 45 74 chr3 172027804 172028789 -55495789 - LOR1-int LTR ERV1 -6480 1640 685 225 248 55 28 chr3 172028814 172028959 -55495619 + L1ME4a LINE L1 5951 6099 -22 25 0 0 0 chr3 172029021 172029046 -55495532 + AT_rich Low_complexity Low_complexity 1 25 0 7533 61 7 6 chr3 172029046 172030532 -55494046 - SVA Other Other -799 1385 55 189 0 0 0 chr3 172030533 172030554 -55494024 + (GGGAGA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr3 172030619 172030642 -55493936 + GC_rich Low_complexity Low_complexity 1 23 0 245 61 0 0 chr3 172080686 172080719 -55443859 - Alu SINE Alu -275 33 1 1159 82 6 31 chr3 172080862 172081021 -55443557 + AluSg/x SINE Alu 81 235 -77 242 231 192 0 chr3 172081979 172082057 -55442521 + MIR SINE MIR 170 262 0 206 81 27 0 chr3 172084261 172084298 -55440280 + (TTTTTG)n Simple_repeat Simple_repeat 1 38 0 414 0 0 0 chr3 172084908 172084954 -55439624 + (TG)n Simple_repeat Simple_repeat 1 46 0 186 47 0 70 chr3 172085167 172085210 -55439368 + (GAA)n Simple_repeat Simple_repeat 1 40 0 419 291 111 0 chr3 172085212 172085329 -55439249 - MIR SINE MIR -112 150 21 703 208 71 12 chr3 172086713 172086881 -55437697 - MER5B DNA MER1_type 0 178 1 2584 33 0 7 chr3 172088859 172089158 -55435420 + AluY SINE Alu 1 297 -14 821 144 16 0 chr3 172089458 172089583 -55434995 - FLAM_A SINE Alu -5 137 11 3108 222 67 18 chr3 172091500 172092635 -55431943 + L1ME1 LINE L1 4968 6165 -1 229 347 25 25 chr3 172092902 172093023 -55431555 + MIR3 SINE MIR 40 160 -48 452 186 176 0 chr3 172093468 172093570 -55431008 + FLAM_C SINE Alu 2 121 -12 444 240 70 54 chr3 172093822 172094188 -55430390 - LTR33 LTR ERVL -8 513 109 202 116 23 47 chr3 172094252 172094295 -55430283 + (TCTA)n Simple_repeat Simple_repeat 2 43 0 3323 191 37 11 chr3 172094998 172095751 -55428827 - L1 LINE L1 -1954 4428 3656 2122 162 30 23 chr3 172095753 172096249 -55428329 + MLT2A2 LTR ERVL 3 510 -44 1889 84 8 0 chr3 172096249 172096510 -55428068 + L1PA6 LINE L1 5891 6153 -1 28 0 0 0 chr3 172096528 172096556 -55428022 + AT_rich Low_complexity Low_complexity 1 28 0 476 72 0 0 chr3 172096556 172096625 -55427953 + MLT2A2 LTR ERVL 385 453 0 11798 172 30 43 chr3 172096625 172097037 -55427541 - L1 LINE L1 -2722 3660 3244 1740 160 67 0 chr3 172097037 172097350 -55427228 + MER44D DNA MER2_type 3 606 -3 11798 172 30 43 chr3 172097350 172099686 -55424892 - L1 LINE L1 -3138 3244 879 2095 125 0 0 chr3 172099686 172100001 -55424577 - AluSx SINE Alu 0 317 3 11798 172 30 43 chr3 172100001 172100546 -55424032 - L1 LINE L1 -5503 879 417 1781 199 0 0 chr3 172100546 172100843 -55423735 + AluJo SINE Alu 1 297 -15 11798 172 30 43 chr3 172100843 172101240 -55423338 - L1 LINE L1 -5965 417 16 335 200 191 26 chr3 172101341 172101456 -55423122 + MIR SINE MIR 129 262 0 32 0 0 0 chr3 172101456 172101488 -55423090 + AT_rich Low_complexity Low_complexity 1 32 0 240 398 25 8 chr3 172102679 172102920 -55421658 + L2 LINE L2 2422 2666 -648 648 135 16 32 chr3 172103040 172103166 -55421412 + L1MC1 LINE L1 6210 6333 0 10936 111 26 19 chr3 172103603 172104939 -55419639 - Tigger1 DNA MER2_type -1 2417 1063 2129 122 7 7 chr3 172104939 172105243 -55419335 - AluSx SINE Alu -8 304 1 10936 111 26 19 chr3 172105243 172105684 -55418894 - Tigger1 DNA MER2_type -1355 1063 627 877 157 0 0 chr3 172105682 172105816 -55418762 - Tigger1 DNA MER2_type -2284 134 1 * 201 94 0 0 chr3 172105898 172105930 -55418648 + (TGAA)n Simple_repeat Simple_repeat 3 34 0 189 339 32 0 chr3 172105931 172105993 -55418585 + MIR SINE MIR 21 84 -124 806 244 5 45 chr3 172106186 172106387 -55418191 + MIR SINE MIR 66 258 -4 1046 307 90 17 chr3 172107009 172107533 -55417045 - MLT1K LTR MaLR -4 584 23 281 231 0 15 chr3 172107881 172107946 -55416632 + MER5B DNA MER1_type 1 64 -114 3398 193 28 47 chr3 172107983 172108807 -55415771 + L1 LINE L1 4061 4868 -1278 3117 114 14 40 chr3 172108807 172109306 -55415272 + L1MB2 LINE L1 5686 6171 0 294 350 60 0 chr3 172109313 172109413 -55415165 + MER5B DNA MER1_type 63 168 -10 517 281 134 14 chr3 172110506 172110723 -55413855 - MIR SINE MIR 0 262 20 2264 110 0 22 chr3 172111178 172111497 -55413081 + AluSx SINE Alu 1 312 0 615 186 25 0 chr3 172111518 172111636 -55412942 + MIR SINE MIR 142 262 0 1425 258 46 5 chr3 172111739 172112452 -55412126 - MER69 DNA AcHobo -444 782 9 220 231 0 0 chr3 172112460 172112512 -55412066 + MIR SINE MIR 180 231 -31 1080 278 72 38 chr3 172112611 172113083 -55411495 + LTR33 LTR ERVL 34 521 0 719 233 33 60 chr3 172113977 172114192 -55410386 - L2 LINE L2 -1 3312 3104 3069 178 21 30 chr3 172114228 172114795 -55409783 + MER68 LTR ERV1 1 562 0 2370 95 0 3 chr3 172115375 172115679 -55408899 + AluSc SINE Alu 1 303 -6 261 248 0 66 chr3 172115893 172116014 -55408564 + CT-rich Low_complexity Low_complexity 4 116 0 858 303 80 82 chr3 172116509 172117102 -55407476 + L2 LINE L2 1165 1758 -1556 2408 100 0 0 chr3 172117102 172117412 -55407166 - AluSg SINE Alu 0 310 1 858 303 80 82 chr3 172117412 172117596 -55406982 + L2 LINE L2 1758 1942 -1372 4686 62 7 0 chr3 172117596 172118162 -55406416 - L1PA7 LINE L1 0 6154 5585 858 303 80 82 chr3 172118162 172118336 -55406242 + L2 LINE L2 1942 2115 -1199 755 289 11 0 chr3 172118471 172118661 -55405917 - Charlie8 DNA MER1_type -2153 264 73 463 350 143 43 chr3 172118755 172119483 -55405095 + L2 LINE L2 2161 2961 -353 919 372 71 12 chr3 172120009 172120590 -55403988 + L3 LINE CR1 962 1576 -1 2223 134 57 8 chr3 172120984 172121350 -55403228 - MSTB LTR MaLR 0 426 43 283 267 29 76 chr3 172121772 172121877 -55402701 + L2 LINE L2 3173 3272 0 2783 157 4 18 chr3 172121946 172122398 -55402180 + L1PB4 LINE L1 5710 6155 -1 271 254 64 36 chr3 172123293 172123403 -55401175 + MIR SINE MIR 142 254 -8 942 231 132 60 chr3 172123464 172123948 -55400630 + LTR33 LTR ERVL 3 521 0 1253 226 189 7 chr3 172123955 172124393 -55400185 + LTR33 LTR ERVL 4 521 0 374 173 13 13 chr3 172125067 172125142 -55399436 - L2 LINE L2 -8 3305 3231 368 265 39 10 chr3 172125259 172125361 -55399217 - L3b LINE CR1 -209 1374 1270 309 314 77 58 chr3 172126823 172126979 -55397599 + L2 LINE L2 3112 3270 -2 447 346 33 19 chr3 172127193 172127450 -55397128 + L2 LINE L2 2941 3272 0 236 228 0 35 chr3 172128044 172128158 -55396420 + (TAA)n Simple_repeat Simple_repeat 1 110 0 380 257 26 79 chr3 172128171 172128323 -55396255 + L1MC4a LINE L1 5508 5651 -470 2378 62 3 10 chr3 172128323 172128627 -55395951 + AluY SINE Alu 1 302 -9 873 207 204 17 chr3 172129127 172129576 -55395002 - MLT1E1 LTR MaLR -38 616 1 441 133 40 0 chr3 172129598 172129673 -55394905 - MLT1D LTR MaLR -9 496 419 * 592 213 85 0 chr3 172129669 172129810 -55394768 - MLT1D LTR MaLR -348 157 5 243 0 0 0 chr3 172129872 172129899 -55394679 + (CA)n Simple_repeat Simple_repeat 2 28 0 231 125 62 0 chr3 172129901 172129949 -55394629 - L1MCa LINE L1 -4358 2068 2018 382 311 94 59 chr3 172129970 172130598 -55393980 - L1ME3 LINE L1 -239 5923 5274 739 254 156 16 chr3 172130609 172130944 -55393634 - MLT1J1 LTR MaLR 0 450 51 785 179 19 6 chr3 172130985 172131141 -55393437 + L1MA10 LINE L1 6175 6332 -2 653 249 115 23 chr3 172131819 172132036 -55392542 - MIR SINE MIR -2 260 24 509 242 168 7 chr3 172132038 172132187 -55392391 + MER5A DNA MER1_type 17 189 0 636 264 63 48 chr3 172132357 172132769 -55391809 - HAL1b LINE L1 -945 403 3 186 103 0 0 chr3 172132794 172132823 -55391755 + (GA)n Simple_repeat Simple_repeat 2 30 0 321 26 0 0 chr3 172132823 172132861 -55391717 + (TG)n Simple_repeat Simple_repeat 2 39 0 319 286 63 32 chr3 172133546 172133735 -55390843 + L1MC4a LINE L1 5703 5897 -1911 324 221 0 0 chr3 172134232 172134309 -55390269 + (CA)n Simple_repeat Simple_repeat 1 77 0 480 143 0 0 chr3 172134453 172134537 -55390041 + (GGAA)n Simple_repeat Simple_repeat 3 86 0 314 106 0 0 chr3 172135003 172135050 -55389528 - MADE1 DNA Mariner -33 47 1 2000 187 56 19 chr3 172135050 172135424 -55389154 - MLT1B LTR MaLR -2 388 1 893 274 161 33 chr3 172135446 172135957 -55388621 - MLT1G1 LTR MaLR 0 595 20 426 107 87 1 chr3 172136333 172136409 -55388169 - L1MC3 LINE L1 -90 7695 6164 842 158 16 0 chr3 172136409 172136536 -55388042 - FLAM_C SINE Alu -13 130 2 2859 146 155 119 chr3 172136540 172136948 -55387630 - L1MC3 LINE L1 -160 7625 7233 253 283 22 11 chr3 172136948 172137040 -55387538 - MLT1F1 LTR MaLR -430 137 45 2859 146 155 119 chr3 172137040 172137416 -55387162 - L1MC3 LINE L1 -552 7233 6718 1641 103 27 18 chr3 172137422 172137646 -55386932 + MER30 DNA MER1_type 4 229 -1 2357 68 0 0 chr3 172137698 172137977 -55386601 + AluY SINE Alu 1 279 -32 291 54 0 0 chr3 172137977 172138014 -55386564 + (TAA)n Simple_repeat Simple_repeat 1 37 0 1761 173 10 29 chr3 172138502 172138808 -55385770 + AluJo SINE Alu 1 300 -12 1916 162 0 25 chr3 172139318 172139632 -55384946 - AluSq SINE Alu -7 306 1 22 35 0 0 chr3 172139640 172139669 -55384909 + AT_rich Low_complexity Low_complexity 1 29 0 432 279 47 35 chr3 172139681 172139853 -55384725 + MIR SINE MIR 5 178 -84 347 201 61 13 chr3 172140062 172140170 -55384408 - MIR SINE MIR -64 144 25 184 349 137 20 chr3 172140160 172140306 -55384272 - L2 LINE L2 -5 3308 3146 * 271 315 0 0 chr3 172140579 172140652 -55383926 - L2 LINE L2 -9 3263 3191 2923 94 22 7 chr3 172141419 172141822 -55382756 + MLT2A1 LTR ERVL 1 409 -35 529 55 39 55 chr3 172141856 172142037 -55382541 + (TA)n Simple_repeat Simple_repeat 2 179 0 305 279 39 19 chr3 172142041 172142145 -55382433 - L1MC4 LINE L1 -1333 6709 6604 411 87 8 63 chr3 172142200 172142326 -55382252 + (TA)n Simple_repeat Simple_repeat 1 119 0 356 69 0 52 chr3 172142358 172142416 -55382162 + MLT2A2 LTR ERVL 399 453 0 4082 75 6 0 chr3 172143260 172143770 -55380808 + L1PA13 LINE L1 5651 6163 0 238 316 115 43 chr3 172144851 172145085 -55379493 + L2 LINE L2 150 400 -2914 1109 276 62 34 chr3 172145425 172145841 -55378737 + MLT1J2 LTR MaLR 21 448 -2 1593 334 142 32 chr3 172145843 172147642 -55376936 + L2 LINE L2 743 2739 -575 293 304 80 9 chr3 172147756 172147868 -55376710 - MER5A DNA MER1_type -33 156 37 201 333 0 81 chr3 172147895 172147982 -55376596 + L2 LINE L2 3150 3229 -43 7164 31 0 0 chr3 172150048 172150873 -55373705 - L1PA3 LINE L1 0 6155 5331 297 0 0 0 chr3 172150923 172150956 -55373622 + (TG)n Simple_repeat Simple_repeat 1 33 0 232 215 139 0 chr3 172151975 172152054 -55372524 - MIR3 SINE MIR -15 193 104 538 198 27 0 chr3 172152056 172152167 -55372411 + L1MC5 LINE L1 6971 7084 -877 1032 212 96 24 chr3 172152173 172152550 -55372028 + L1MC5 LINE L1 7526 7929 -32 2161 112 0 3 chr3 172152698 172152994 -55371584 - AluSx SINE Alu -17 295 1 474 237 186 0 chr3 172153089 172153245 -55371333 - MIR SINE MIR -69 193 9 379 163 33 43 chr3 172153343 172153435 -55371143 - MLT1F1 LTR MaLR 0 567 477 2087 94 3 7 chr3 172153821 172154107 -55370471 + AluSx SINE Alu 1 285 -27 2833 250 84 72 chr3 172154123 172155253 -55369325 - HAL1 LINE L1 -319 2188 1035 2238 119 3 3 chr3 172155253 172155563 -55369015 - AluSx SINE Alu -2 310 1 2833 250 84 72 chr3 172155563 172155859 -55368719 - HAL1 LINE L1 -1472 1035 744 3177 122 17 4 chr3 172155871 172156354 -55368224 + L1MA5A LINE L1 5498 5986 -311 2117 130 10 0 chr3 172158172 172158480 -55366098 - AluSx SINE Alu -1 311 1 378 222 0 49 chr3 172158769 172158850 -55365728 - MER91A DNA MER1_type -119 77 1 1839 166 55 72 chr3 172162772 172163188 -55361390 + MLT2D LTR ERVL 3 411 -3 23 33 0 0 chr3 172163824 172163854 -55360724 + AT_rich Low_complexity Low_complexity 1 30 0 658 273 0 0 chr3 172164197 172164336 -55360242 + MIR SINE MIR 2 140 -122 237 242 84 40 chr3 172164336 172164505 -55360073 - L1M4 LINE L1 -413 5708 4466 229 320 39 29 chr3 172165514 172165617 -55358961 - L3b LINE CR1 -200 1383 1280 283 298 53 0 chr3 172165711 172165805 -55358773 + MIR SINE MIR 34 132 -76 2639 237 73 34 chr3 172166120 172166884 -55357694 + MER21B LTR ERV1 1 794 -69 662 266 61 28 chr3 172166916 172166961 -55357617 + MIR SINE MIR 25 67 -195 2235 174 169 63 chr3 172166961 172167552 -55357026 - MLT1E1 LTR MaLR 0 654 1 662 266 61 28 chr3 172167552 172167720 -55356858 + MIR SINE MIR 67 245 -17 1290 272 127 12 chr3 172167892 172168374 -55356204 - MLT1K LTR MaLR -4 584 48 337 177 163 109 chr3 172169386 172169533 -55355045 + MIR3 SINE MIR 37 191 -17 449 289 0 25 chr3 172170321 172170442 -55354136 + MIR3 SINE MIR 43 160 -48 501 269 19 0 chr3 172170445 172170553 -55354025 + MER58B DNA MER1_type 9 118 -223 1210 170 25 0 chr3 172170609 172170809 -55353769 + MER58B DNA MER1_type 137 341 0 255 231 31 0 chr3 172171130 172171195 -55353383 - MLT1J LTR MaLR -33 478 412 1014 171 183 35 chr3 172171213 172171558 -55353020 + L1MC5 LINE L1 7518 7913 -48 21 36 0 0 chr3 172171823 172171851 -55352727 + AT_rich Low_complexity Low_complexity 1 28 0 2325 82 0 3 chr3 172171890 172172183 -55352395 - AluSc SINE Alu -17 292 1 1000 307 82 3 chr3 172172354 172172719 -55351859 - MLT1J LTR MaLR -114 397 4 297 243 22 124 chr3 172172996 172173165 -55351413 + MIR SINE MIR 41 192 -61 546 113 0 0 chr3 172174362 172174442 -55350136 - MADE1 DNA Mariner 0 80 1 278 270 95 0 chr3 172176650 172176724 -55347854 - L2 LINE L2 -6 3307 3227 252 167 0 0 chr3 172178000 172178048 -55346530 + (CA)n Simple_repeat Simple_repeat 2 49 0 473 171 8 0 chr3 172178400 172178517 -55346061 + (CA)n Simple_repeat Simple_repeat 2 119 0 749 226 107 44 chr3 172180222 172180573 -55344005 - MLT1J2 LTR MaLR -10 399 15 835 165 0 23 chr3 172183951 172184084 -55340494 - FLAM_C SINE Alu -3 130 1 21 36 0 0 chr3 172184224 172184252 -55340326 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr3 172184291 172184320 -55340258 + (CA)n Simple_repeat Simple_repeat 2 30 0 974 200 61 71 chr3 172185563 172185858 -55338720 + MLT1J LTR MaLR 217 508 -3 283 286 124 0 chr3 172186137 172186242 -55338336 + MIR SINE MIR 34 151 -111 924 331 30 1 chr3 172187969 172188358 -55336220 + MER115 DNA AcHobo 1 434 -259 239 309 0 0 chr3 172188354 172188409 -55336169 + MER115 DNA AcHobo 638 692 -1 * 742 283 132 48 chr3 172189812 172190229 -55334349 - L2 LINE L2 0 3313 2862 294 73 0 0 chr3 172191465 172191506 -55333072 + (TC)n Simple_repeat Simple_repeat 2 42 0 265 262 87 81 chr3 172191626 172191775 -55332803 + L2 LINE L2 1994 2143 -1171 221 56 0 28 chr3 172191791 172191827 -55332751 + (TTTTA)n Simple_repeat Simple_repeat 1 35 0 7549 34 3 0 chr3 172191827 172192865 -55331713 - L1PA3 LINE L1 -24 6131 5087 924 289 184 30 chr3 172192866 172193729 -55330849 + L2 LINE L2 2139 3163 -150 544 293 23 0 chr3 172193898 172194031 -55330547 + L2 LINE L2 3136 3271 -1 648 263 6 34 chr3 172194054 172194229 -55330349 - MER5B DNA MER1_type -8 170 1 567 225 63 11 chr3 172195970 172196172 -55328406 + LTR50 LTR ERVL 299 456 -67 898 177 5 38 chr3 172196174 172196360 -55328218 - MER5A DNA MER1_type -9 180 1 232 258 79 53 chr3 172197649 172197786 -55326792 - L1ME4a LINE L1 0 6121 5976 360 64 0 0 chr3 172197786 172197833 -55326745 + (TCTA)n Simple_repeat Simple_repeat 2 48 0 232 258 79 53 chr3 172197833 172197885 -55326693 - L1ME4a LINE L1 -145 5976 5927 246 328 38 15 chr3 172198025 172198156 -55326422 - L1ME4a LINE L1 -1998 5810 5677 597 208 0 81 chr3 172199198 172199347 -55325231 - L2 LINE L2 -18 3295 3159 443 264 70 50 chr3 172199437 172199638 -55324940 + MLT1H LTR MaLR 106 310 -239 2074 224 187 32 chr3 172199819 172200662 -55323916 + LTR28 LTR ERV1 5 1020 0 553 285 168 48 chr3 172200676 172201218 -55323360 - L2 LINE L2 -167 3146 2505 566 45 0 0 chr3 172201241 172201308 -55323270 + AluY SINE Alu 2 68 -242 921 112 0 0 chr3 172201308 172201433 -55323145 + AluSg/x SINE Alu 174 298 -14 1156 257 115 34 chr3 172201433 172201660 -55322918 - L2 LINE L2 -844 2470 2263 711 270 61 0 chr3 172201660 172201823 -55322755 - MER96 DNA MER1_type -1 174 2 1156 257 115 34 chr3 172201823 172202066 -55322512 - L2 LINE L2 -1051 2263 1962 1222 298 117 49 chr3 172202345 172202854 -55321724 + L1MC4a LINE L1 5401 5946 -356 22 35 0 0 chr3 172202863 172202892 -55321686 + AT_rich Low_complexity Low_complexity 1 29 0 479 222 255 0 chr3 172202896 172203049 -55321529 - MIR SINE MIR -66 196 5 228 224 0 0 chr3 172203275 172203333 -55321245 + L1MC5 LINE L1 7500 7557 -404 237 139 0 0 chr3 172203363 172203406 -55321172 + (T)n Simple_repeat Simple_repeat 1 43 0 1819 51 0 0 chr3 172203409 172203625 -55320953 - L1PA2 LINE L1 0 6155 5940 216 111 0 0 chr3 172203785 172203821 -55320757 + (TGGA)n Simple_repeat Simple_repeat 2 37 0 10743 156 31 4 chr3 172203830 172204865 -55319713 + L1PA14 LINE L1 2248 3254 -2900 2890 10 0 0 chr3 172204865 172205176 -55319402 + AluY SINE Alu 1 311 0 10743 156 31 4 chr3 172205176 172207938 -55316640 + L1PA14 LINE L1 3254 6153 -1 2260 104 65 74 chr3 172207947 172208012 -55316566 - MSTA LTR MaLR 0 428 364 2111 122 0 0 chr3 172208012 172208300 -55316278 - AluSx SINE Alu -24 288 1 2260 104 65 74 chr3 172208300 172208666 -55315912 - MSTA LTR MaLR -64 364 1 2236 163 40 2 chr3 172208820 172209220 -55315358 + MER47B DNA MER2_type 3 417 -1 180 0 0 0 chr3 172209296 172209316 -55315262 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 180 0 0 0 chr3 172209597 172209617 -55314961 + (TTC)n Simple_repeat Simple_repeat 2 21 0 560 231 48 70 chr3 172210154 172210201 -55314377 - MIR SINE MIR 0 262 216 1848 136 47 0 chr3 172210201 172210480 -55314098 - AluSx SINE Alu -20 292 1 560 231 48 70 chr3 172210480 172210618 -55313960 - MIR SINE MIR -46 216 81 652 189 20 92 chr3 172210654 172210850 -55313728 - L1ME1 LINE L1 -8 6158 5977 * 1474 221 58 6 chr3 172210849 172211513 -55313065 - L1ME1 LINE L1 -562 5604 4914 * 2405 218 32 4 chr3 172211512 172212071 -55312507 + L1ME1 LINE L1 5587 6161 -5 744 309 138 59 chr3 172213601 172213901 -55310677 + L2 LINE L2 1392 1667 -1647 306 0 0 0 chr3 172213901 172213935 -55310643 + (CA)n Simple_repeat Simple_repeat 2 35 0 744 309 138 59 chr3 172213935 172214339 -55310239 + L2 LINE L2 1667 2038 -1276 2097 95 7 21 chr3 172214339 172214623 -55309955 - AluSg SINE Alu -30 280 1 744 309 138 59 chr3 172214623 172214912 -55309666 + L2 LINE L2 2038 2464 -850 913 286 148 8 chr3 172215408 172215765 -55308813 + MLT1I LTR MaLR 1 407 -2 187 286 0 20 chr3 172215856 172215905 -55308673 + L2 LINE L2 3245 3292 -21 2226 120 0 0 chr3 172216009 172216309 -55308269 + AluSx SINE Alu 1 300 -12 927 202 6 6 chr3 172217923 172218101 -55306477 - MER5B DNA MER1_type 0 178 1 9236 81 17 0 chr3 172219689 172221720 -55302858 + L1PA7 LINE L1 4103 6149 -5 460 291 139 18 chr3 172221801 172222021 -55302557 + MIR SINE MIR 3 250 -12 1706 170 34 14 chr3 172222700 172222994 -55301584 + AluJb SINE Alu 1 300 -12 325 400 24 6 chr3 172223586 172223751 -55300827 - MIR3 SINE MIR -5 203 36 345 279 50 121 chr3 172223762 172224002 -55300576 - L2 LINE L2 -9 3263 3041 859 182 0 21 chr3 172225495 172225682 -55298896 + LTR9B LTR ERV1 379 561 -83 1099 135 48 32 chr3 172225693 172225945 -55298633 + MER33 DNA MER1_type 43 298 -26 198 0 0 0 chr3 172225954 172225976 -55298602 + (TA)n Simple_repeat Simple_repeat 2 23 0 2214 89 0 0 chr3 172225977 172226288 -55298290 - AluSx SINE Alu 0 311 1 488 160 10 0 chr3 172226683 172226783 -55297795 + L1MA5A LINE L1 6077 6177 -120 881 169 7 7 chr3 172226783 172226931 -55297647 - FRAM SINE Alu -21 155 8 627 154 0 0 chr3 172226954 172227064 -55297514 + L1MA5A LINE L1 6178 6287 -10 2043 209 59 48 chr3 172227478 172228103 -55296475 + MLT1E2 LTR MaLR 1 626 0 2167 125 0 10 chr3 172228309 172228622 -55295956 + AluSx SINE Alu 3 312 0 232 245 21 32 chr3 172228698 172228792 -55295786 + MLT1E LTR MaLR 25 117 -476 25 0 0 0 chr3 172229347 172229372 -55295206 + AT_rich Low_complexity Low_complexity 1 25 0 381 22 0 0 chr3 172229994 172230040 -55294538 + (TG)n Simple_repeat Simple_repeat 2 47 0 249 33 0 0 chr3 172230470 172230500 -55294078 + (TTCA)n Simple_repeat Simple_repeat 3 32 0 553 220 0 9 chr3 172230502 172230611 -55293967 - L2 LINE L2 -13 3300 3193 490 227 57 28 chr3 172230803 172230944 -55293634 - MIR SINE MIR -5 257 113 788 224 136 22 chr3 172231007 172231235 -55293343 - MIR SINE MIR 0 262 9 2184 117 3 0 chr3 172232083 172232381 -55292197 - AluSq SINE Alu -8 305 7 244 333 63 0 chr3 172232555 172232681 -55291897 - L2 LINE L2 -12 3301 3168 2262 103 7 3 chr3 172232755 172233065 -55291513 - AluSp SINE Alu -2 311 1 261 350 19 0 chr3 172233304 172233407 -55291171 + L2 LINE L2 3208 3312 -1 218 391 81 0 chr3 172233617 172233778 -55290800 - MIR SINE MIR -42 220 47 33 25 0 0 chr3 172234601 172234641 -55289937 + AT_rich Low_complexity Low_complexity 1 40 0 448 255 177 14 chr3 172235367 172235508 -55289070 + MER5A DNA MER1_type 20 183 -6 223 293 66 0 chr3 172236445 172236551 -55288027 + L2 LINE L2 1883 1995 -1319 2301 108 7 0 chr3 172236563 172236868 -55287710 - AluSx SINE Alu -5 307 1 443 201 19 39 chr3 172236876 172236896 -55287682 - L1MA10 LINE L1 0 6334 6315 2832 212 122 25 chr3 172236896 172237334 -55287244 - L1ME1 LINE L1 -8 6158 5764 1764 147 37 0 chr3 172237334 172237607 -55286971 - AluJb SINE Alu -29 283 1 2832 212 122 25 chr3 172237607 172238188 -55286390 - L1ME1 LINE L1 -402 5764 5050 223 402 12 0 chr3 172238449 172238531 -55286047 + MIR SINE MIR 15 97 -165 386 271 68 53 chr3 172238545 172238885 -55285693 - MER68 LTR ERV1 -46 516 172 401 269 67 7 chr3 172239085 172239234 -55285344 + MIR SINE MIR 105 262 0 249 292 67 33 chr3 172239243 172239363 -55285215 + MIR SINE MIR 121 244 -18 1499 116 172 0 chr3 172240578 172240828 -55283750 - AluJb SINE Alu -19 293 1 721 187 27 32 chr3 172240852 172241039 -55283539 + MER112 DNA MER1_type 5 190 -70 652 220 101 59 chr3 172241145 172241431 -55283147 - LTR16C LTR ERVL 0 491 194 2213 129 0 0 chr3 172241761 172242064 -55282514 + AluSx SINE Alu 1 303 -9 621 289 26 34 chr3 172242296 172242562 -55282016 - L1ME LINE L1 -331 5790 5527 2395 60 0 13 chr3 172242584 172242885 -55281693 - AluY SINE Alu -14 297 1 2402 87 0 0 chr3 172243122 172243433 -55281145 + AluY SINE Alu 1 311 0 21 71 0 0 chr3 172243581 172243623 -55280955 + AT_rich Low_complexity Low_complexity 1 42 0 248 229 104 62 chr3 172243642 172243786 -55280792 - MLT1L LTR MaLR 0 615 466 389 279 199 29 chr3 172243810 172244082 -55280496 - MLT1J LTR MaLR -193 318 1 477 268 152 8 chr3 172244082 172244325 -55280253 - L1ME LINE L1 -324 5797 5520 2164 110 0 3 chr3 172245531 172245844 -55278734 + AluSx SINE Alu 1 312 0 1597 156 33 88 chr3 172245855 172246252 -55278326 + THE1C LTR MaLR 1 375 0 641 301 80 36 chr3 172247081 172247330 -55277248 - MIR SINE MIR -2 260 1 185 263 253 10 chr3 172247342 172247441 -55277137 + L2 LINE L2 3175 3297 -16 724 260 95 49 chr3 172247588 172247698 -55276880 + L1MC4a LINE L1 5307 5410 -2398 2082 107 4 4 chr3 172247698 172248008 -55276570 + AluSx SINE Alu 1 310 0 724 260 95 49 chr3 172248008 172248223 -55276355 + L1MC4a LINE L1 5410 5648 -2160 580 171 13 63 chr3 172248232 172248390 -55276188 + LTR41 LTR ERVL 27 176 -597 2366 102 0 0 chr3 172248801 172249104 -55275474 - AluSx SINE Alu -9 303 1 686 209 118 71 chr3 172249126 172249337 -55275241 + MER58A DNA MER1_type 1 221 -3 2873 242 98 30 chr3 172249477 172249755 -55274823 + L1MC4a LINE L1 5703 5961 -1847 2231 75 7 0 chr3 172249755 172250083 -55274495 + AluSg SINE Alu 1 330 0 2873 242 98 30 chr3 172250083 172250988 -55273590 + L1MC4a LINE L1 5961 6968 -840 1747 188 3 0 chr3 172251024 172251317 -55273261 - AluJo SINE Alu -16 296 3 546 212 136 20 chr3 172251395 172251493 -55273085 + L1MC4 LINE L1 7613 7698 -344 2124 119 0 3 chr3 172251493 172251805 -55272773 + AluSx SINE Alu 1 311 0 546 212 136 20 chr3 172251805 172251955 -55272623 + L1MC4 LINE L1 7698 7891 -151 225 203 47 16 chr3 172252026 172252090 -55272488 + L1MC4 LINE L1 7926 7991 -51 559 286 90 16 chr3 172252206 172252395 -55272183 - MIR SINE MIR -38 224 22 399 209 0 0 chr3 172253003 172253113 -55271465 + (TG)n Simple_repeat Simple_repeat 2 111 0 291 142 217 104 chr3 172253304 172253410 -55271168 + MIR SINE MIR 13 130 -132 535 239 117 5 chr3 172253412 172253625 -55270953 - LTR16A1 LTR ERVL -7 450 214 1109 117 0 47 chr3 172253626 172253797 -55270781 - AluSg/x SINE Alu -16 294 132 2256 95 3 0 chr3 172253797 172254082 -55270496 - AluSx SINE Alu -6 306 21 522 256 59 59 chr3 172254090 172254309 -55270269 - LTR16A1 LTR ERVL -237 220 2 285 232 0 0 chr3 172254316 172254372 -55270206 + MIR SINE MIR 161 216 -46 205 222 93 19 chr3 172254379 172254433 -55270145 - MIR SINE MIR -3 259 202 2095 131 0 0 chr3 172254532 172254830 -55269748 + AluSx SINE Alu 1 298 -14 320 316 38 47 chr3 172255960 172256172 -55268406 - L2 LINE L2 -55 3258 3049 488 246 17 0 chr3 172256623 172256741 -55267837 - L2 LINE L2 -2 3311 3192 314 310 49 35 chr3 172257955 172258181 -55266397 + L2 LINE L2 176 404 -2910 495 242 24 30 chr3 172258491 172258713 -55265865 - MLT1J LTR MaLR -332 283 1 214 308 15 54 chr3 172259599 172259729 -55264849 - L3 LINE CR1 -758 819 695 402 237 156 0 chr3 172260083 172260218 -55264360 - MER102b DNA MER1_type -49 292 137 2217 131 0 0 chr3 172260982 172261288 -55263290 - AluSx SINE Alu -6 306 1 1242 177 50 31 chr3 172261412 172261729 -55262849 + MER33 DNA MER1_type 1 323 -1 305 336 22 15 chr3 172262258 172262392 -55262186 + MIR SINE MIR 23 157 -105 261 0 0 0 chr3 172262399 172262428 -55262150 + (TTCCC)n Simple_repeat Simple_repeat 1 29 0 343 109 0 0 chr3 172262531 172262577 -55262001 - AluSx SINE Alu -256 46 1 2146 121 0 0 chr3 172262658 172262975 -55261603 + AluSx SINE Alu 2 318 0 187 299 35 69 chr3 172264664 172264751 -55259827 - L2 LINE L2 -2 3311 3228 267 250 57 43 chr3 172264779 172264919 -55259659 + L1MC5 LINE L1 7790 7931 -30 2419 37 0 30 chr3 172264929 172265225 -55259353 + AluY SINE Alu 1 287 -24 267 253 126 32 chr3 172265820 172265915 -55258663 + MIR SINE MIR 49 152 -110 189 327 67 19 chr3 172269489 172269593 -55254985 - MIR3 SINE MIR -11 197 89 317 209 73 27 chr3 172269819 172269929 -55254649 + MER113 DNA MER1_type? 2 116 -405 21 57 0 0 chr3 172269972 172270007 -55254571 + AT_rich Low_complexity Low_complexity 1 35 0 203 196 0 59 chr3 172270241 172270292 -55254286 + MIR SINE MIR 79 126 -136 581 280 108 9 chr3 172270922 172271154 -55253424 + MIR SINE MIR 7 261 -1 277 276 46 63 chr3 172271200 172271374 -55253204 + L2 LINE L2 3142 3312 -1 2293 82 0 10 chr3 172271561 172271886 -55252692 + AluSx SINE Alu 1 312 0 652 186 114 18 chr3 172272116 172272283 -55252295 - MER5A DNA MER1_type -2 187 5 318 213 21 32 chr3 172272488 172272582 -55251996 + L2 LINE L2 2740 2832 -482 481 306 0 0 chr3 172272646 172272793 -55251785 + MIR SINE MIR 116 262 0 455 264 141 25 chr3 172273005 172273282 -55251296 + L2 LINE L2 3005 3313 0 1513 166 12 12 chr3 172273861 172274114 -55250464 + AluJo SINE Alu 36 288 -24 438 257 19 9 chr3 172274133 172274238 -55250340 + MER5A DNA MER1_type 80 185 -4 274 214 0 0 chr3 172275345 172275401 -55249177 + L1MC5 LINE L1 7834 7889 -72 369 222 77 9 chr3 172275476 172275626 -55248952 + HAL1b LINE L1 1193 6118 -3 181 231 202 29 chr3 172275794 172275898 -55248680 + MIR SINE MIR 33 154 -108 500 177 30 91 chr3 172275973 172276137 -55248441 - MER63 DNA MER1_type 0 1688 671 1710 126 0 12 chr3 172276139 172276385 -55248193 - AluSx SINE Alu -14 298 56 695 193 0 0 chr3 172276566 172276685 -55247893 + FLAM_A SINE Alu 5 123 -10 523 266 125 78 chr3 172276700 172277109 -55247469 + MLT1L LTR MaLR 168 595 -20 825 183 22 83 chr3 172278409 172278638 -55245940 + MER20B DNA MER1_type 1 215 -4 202 342 0 26 chr3 172278724 172278841 -55245737 - L2 LINE L2 -234 3038 2925 1367 232 76 18 chr3 172279138 172279567 -55245011 - MLT1C LTR MaLR -3 464 18 2054 134 47 33 chr3 172279615 172279974 -55244604 - THE1B LTR MaLR 0 364 1 1381 176 143 14 chr3 172280080 172280443 -55244135 - Charlie1 DNA MER1_type 0 2761 2352 348 141 176 56 chr3 172281721 172281912 -55242666 - MER5C DNA MER1_type -2 322 52 446 241 121 20 chr3 172282075 172282274 -55242304 - MIR SINE MIR -1 261 43 1104 172 103 39 chr3 172283343 172283576 -55241002 - AluJb SINE Alu -64 248 1 187 339 48 32 chr3 172284431 172284555 -55240023 - MIR SINE MIR -12 250 125 1226 265 85 9 chr3 172285442 172285876 -55238702 - MLT1C LTR MaLR 0 467 1 810 311 139 25 chr3 172286130 172287012 -55237566 + L2 LINE L2 1752 2734 -580 438 181 40 27 chr3 172287015 172287164 -55237414 + CT-rich Low_complexity Low_complexity 5 155 0 654 196 0 0 chr3 172287164 172287276 -55237302 - FLAM_C SINE Alu -30 113 2 1477 220 29 45 chr3 172287493 172288091 -55236487 - L1MEc LINE L1 -3677 2538 1969 249 357 0 0 chr3 172288109 172288193 -55236385 + L2 LINE L2 2989 3072 -200 301 257 140 15 chr3 172288498 172288634 -55235944 - MIR SINE MIR 0 262 110 1982 71 67 21 chr3 172289865 172290147 -55234431 - AluY SINE Alu -16 295 1 186 103 0 0 chr3 172291552 172291581 -55232997 + (TG)n Simple_repeat Simple_repeat 2 30 0 815 183 13 0 chr3 172291791 172291944 -55232634 + MER5A DNA MER1_type 35 189 0 215 234 39 26 chr3 172292120 172292197 -55232381 + MIR SINE MIR 74 151 -111 445 296 46 7 chr3 172292198 172292350 -55232228 - MIR SINE MIR -99 163 6 730 234 107 65 chr3 172292719 172293074 -55231504 + MER20B DNA MER1_type 163 532 -251 876 106 0 0 chr3 172293076 172293199 -55231379 - AluSg/x SINE Alu -4 305 183 327 247 32 0 chr3 172293262 172293355 -55231223 - MER5A DNA MER1_type -85 104 9 492 207 153 30 chr3 172293364 172293567 -55231011 + MER20B DNA MER1_type 548 775 -8 1198 253 96 33 chr3 172293689 172294435 -55230143 - L2 LINE L2 0 3313 2530 2330 107 7 0 chr3 172296139 172296449 -55228129 - AluSx SINE Alu 0 312 1 685 141 148 13 chr3 172296677 172296826 -55227752 + MLT1G LTR MaLR 422 590 0 263 118 118 0 chr3 172297229 172297280 -55227298 + HAL1 LINE L1 1800 1856 -651 198 0 0 0 chr3 172297321 172297343 -55227235 + (A)n Simple_repeat Simple_repeat 1 22 0 2016 125 4 0 chr3 172297347 172297626 -55226952 + AluSq SINE Alu 1 280 -33 315 226 36 0 chr3 172297632 172297716 -55226862 - L1M4 LINE L1 -1423 4723 4637 22 35 0 0 chr3 172298425 172298454 -55226124 + AT_rich Low_complexity Low_complexity 1 29 0 440 222 17 0 chr3 172298852 172298969 -55225609 + (CATATA)n Simple_repeat Simple_repeat 2 120 0 281 307 0 0 chr3 172298977 172299065 -55225513 - L1MC4 LINE L1 -1340 6702 6615 261 233 47 23 chr3 172299026 172299112 -55225466 + L1MC4 LINE L1 6614 6701 -1341 * 274 167 42 115 chr3 172299686 172299729 -55224849 - L1MC4 LINE L1 -11 8031 7997 2223 102 0 19 chr3 172299729 172300042 -55224536 + AluSx SINE Alu 1 307 -5 274 167 42 115 chr3 172300042 172300094 -55224484 - L1MC4 LINE L1 -45 7997 7943 1844 272 147 52 chr3 172300456 172301763 -55222815 - L1MC4a LINE L1 -131 7677 6234 2485 71 0 0 chr3 172301763 172302057 -55222521 + AluSx SINE Alu 6 299 -13 1844 272 147 52 chr3 172302057 172302114 -55222464 - L1MC4a LINE L1 -1574 6234 6184 664 95 44 73 chr3 172302466 172302603 -55221975 - L1MB3 LINE L1 -1 6182 6050 1898 124 25 0 chr3 172302662 172302936 -55221642 - AluSx SINE Alu -31 281 1 249 226 11 86 chr3 172303172 172303219 -55221359 - L1ME LINE L1 -463 5658 5620 1788 151 82 14 chr3 172303219 172303584 -55220994 - MLT1B LTR MaLR 0 390 1 249 226 11 86 chr3 172303584 172303629 -55220949 - L1ME LINE L1 -501 5620 5573 1957 127 6 40 chr3 172303886 172304209 -55220369 + AluSx SINE Alu 1 312 0 648 302 154 30 chr3 172304218 172304685 -55219893 + L1MC4a LINE L1 5522 6046 -1762 2047 114 29 23 chr3 172305648 172305954 -55218624 - AluSx SINE Alu -2 310 3 1750 176 20 3 chr3 172309991 172310286 -55214292 - AluJb SINE Alu -12 300 1 930 320 56 40 chr3 172312081 172312866 -55211712 + L2 LINE L2 2477 3279 -34 297 0 0 0 chr3 172313658 172313691 -55210887 + (TG)n Simple_repeat Simple_repeat 2 34 0 1574 190 10 0 chr3 172313711 172314000 -55210578 - AluJo SINE Alu -12 300 9 958 333 55 47 chr3 172314028 172314536 -55210042 + L2 LINE L2 2257 2768 -546 762 262 115 48 chr3 172314568 172314942 -55209636 + L2 LINE L2 2915 3313 0 215 250 16 0 chr3 172314957 172315021 -55209557 + (TATG)n Simple_repeat Simple_repeat 3 67 0 1732 184 0 25 chr3 172315259 172315579 -55208999 + AluJo SINE Alu 1 312 0 3614 91 2 16 chr3 172316235 172316787 -55207791 + L1PA4 LINE L1 5609 6152 -3 225 85 0 128 chr3 172318170 172318217 -55206361 - MLT2D LTR ERVL -7 390 350 233 229 0 0 chr3 172318217 172318265 -55206313 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 1827 174 25 27 chr3 172318291 172318454 -55206124 - MLT2D LTR ERVL -48 366 204 2199 108 3 3 chr3 172318454 172318749 -55205829 - AluSg SINE Alu -15 295 1 1827 174 25 27 chr3 172318749 172318952 -55205626 - MLT2D LTR ERVL -210 204 1 1314 196 126 0 chr3 172320494 172320749 -55203829 - AluSx SINE Alu -23 289 3 2288 105 0 10 chr3 172320882 172321196 -55203382 - AluSx SINE Alu -1 311 1 222 314 70 0 chr3 172321265 172321351 -55203227 + MIR SINE MIR 72 163 -99 2365 97 3 3 chr3 172322039 172322349 -55202229 - AluSg SINE Alu 0 310 1 293 253 155 23 chr3 172322628 172322802 -55201776 - Charlie8 DNA MER1_type -2244 173 87 193 203 135 27 chr3 172323033 172323107 -55201471 + L2 LINE L2 432 513 -2801 289 326 76 52 chr3 172323977 172324149 -55200429 + MIR SINE MIR 87 262 0 184 305 21 92 chr3 172325003 172325144 -55199434 - MIR SINE MIR -129 133 3 1238 178 8 13 chr3 172325765 172326001 -55198577 - MER46A DNA MER2_type -1 235 1 1359 124 134 59 chr3 172326476 172326766 -55197812 - AluJo SINE Alu 0 312 1 22 0 0 0 chr3 172327181 172327203 -55197375 + AT_rich Low_complexity Low_complexity 1 22 0 356 266 57 16 chr3 172327903 172328027 -55196551 + MIR SINE MIR 19 147 -115 202 316 0 0 chr3 172328729 172328786 -55195792 - L2 LINE L2 -31 3241 3185 372 268 214 6 chr3 172329103 172329271 -55195307 + MIR SINE MIR 4 206 -56 1366 188 80 18 chr3 172329293 172329569 -55195009 - AluJo SINE Alu -19 293 1 857 124 0 0 chr3 172329843 172329964 -55194614 + AluSg/x SINE Alu 189 309 0 631 251 58 37 chr3 172330392 172330583 -55193995 + MIR SINE MIR 64 258 -4 1836 143 31 7 chr3 172330834 172331120 -55193458 + AluSx SINE Alu 1 293 -19 643 168 0 128 chr3 172333196 172333345 -55191233 - FLAM_A SINE Alu -3 130 1 2151 137 7 0 chr3 172333353 172333660 -55190918 - AluSx SINE Alu -3 309 1 270 245 113 28 chr3 172334648 172334754 -55189824 + MIR SINE MIR 120 234 -28 878 208 0 22 chr3 172337468 172337646 -55186932 + FRAM SINE Alu 1 174 -2 710 315 96 54 chr3 172338048 172338724 -55185854 + L2 LINE L2 2585 3313 0 735 0 0 0 chr3 172339875 172339961 -55184617 + 5S rRNA rRNA 1 86 -35 2447 77 0 0 chr3 172341951 172342248 -55182330 - AluSq SINE Alu -16 297 1 2338 92 10 0 chr3 172343403 172343707 -55180871 + AluSp SINE Alu 3 309 -4 2397 96 0 3 chr3 172345729 172346042 -55178536 - AluSq SINE Alu 0 313 2 2338 65 3 0 chr3 172346659 172346951 -55177627 + AluY SINE Alu 1 293 -18 198 0 0 0 chr3 172347028 172347050 -55177528 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 318 207 0 12 chr3 172347390 172347472 -55177106 + L1MC5 LINE L1 7704 7784 -177 838 173 22 5 chr3 172347491 172347676 -55176902 + L1MD3 LINE L1 7807 7994 -1 1679 146 60 0 chr3 172348931 172349224 -55175354 - AluSq SINE Alu 0 309 1 22 0 0 0 chr3 172349834 172349856 -55174722 + AT_rich Low_complexity Low_complexity 1 22 0 183 42 0 0 chr3 172350109 172350133 -55174445 + (T)n Simple_repeat Simple_repeat 1 24 0 204 156 22 0 chr3 172351737 172351782 -55172796 + (CAAA)n Simple_repeat Simple_repeat 2 47 0 852 297 50 0 chr3 172352544 172352766 -55171812 - MIR SINE MIR -17 245 13 226 231 0 46 chr3 172352833 172352898 -55171680 - MIR SINE MIR -8 254 193 207 0 0 0 chr3 172353000 172353023 -55171555 + (TC)n Simple_repeat Simple_repeat 1 23 0 260 303 70 28 chr3 172353211 172353353 -55171225 - MIR3 SINE MIR -1 207 60 2240 87 14 0 chr3 172354165 172354452 -55170126 + AluSx SINE Alu 1 291 -21 276 280 103 9 chr3 172357399 172357506 -55167072 - MIR SINE MIR -69 193 77 189 0 0 0 chr3 172357847 172357868 -55166710 + (T)n Simple_repeat Simple_repeat 1 21 0 2558 72 0 0 chr3 172358418 172358725 -55165853 - AluY SINE Alu -4 307 1 870 231 12 0 chr3 172358830 172359003 -55165575 - FAM SINE Alu 0 175 1 2038 110 38 0 chr3 172360188 172360480 -55164098 + AluSq SINE Alu 1 303 -10 204 344 11 43 chr3 172361346 172361439 -55163139 + MIR SINE MIR 43 132 -76 1034 228 120 6 chr3 172361444 172361777 -55162801 - L1MC4 LINE L1 -374 7668 7298 184 339 62 0 chr3 172363143 172363208 -55161370 - L2 LINE L2 -10 3262 3194 462 231 23 31 chr3 172364100 172364154 -55160424 + MIR SINE MIR 111 164 -98 1939 130 38 0 chr3 172364154 172364446 -55160132 - AluSx SINE Alu -9 303 1 462 231 23 31 chr3 172364446 172364521 -55160057 + MIR SINE MIR 164 239 -23 365 266 158 0 chr3 172364629 172364768 -55159810 - MIR SINE MIR -89 173 13 272 330 8 0 chr3 172365717 172365835 -55158743 - L1MC4a LINE L1 -600 7208 7090 22 0 0 0 chr3 172365986 172366008 -55158570 + AT_rich Low_complexity Low_complexity 1 22 0 2444 101 0 0 chr3 172366013 172366321 -55158257 + AluSc SINE Alu 1 308 -1 1321 251 182 40 chr3 172366349 172367423 -55157155 - L1MC4a LINE L1 -831 6977 5752 3483 148 155 115 chr3 172367449 172367970 -55156608 - L1MC3 LINE L1 -32 7753 7254 247 248 40 20 chr3 172367970 172368071 -55156507 - MLT1F1 LTR MaLR -430 137 35 3483 148 155 115 chr3 172368071 172368110 -55156468 - L1MC3 LINE L1 -531 7254 7218 309 51 0 0 chr3 172368110 172368149 -55156429 + (CCTA)n Simple_repeat Simple_repeat 4 42 0 3483 148 155 115 chr3 172368149 172368653 -55155925 - L1MC3 LINE L1 -567 7218 6541 563 259 95 39 chr3 172368744 172369049 -55155529 + HAL1 LINE L1 2186 2507 0 771 201 39 0 chr3 172369397 172369576 -55155002 - L1MB2 LINE L1 -25 6146 5961 1914 117 0 84 chr3 172369806 172369981 -55154597 - AluSg SINE Alu -5 305 117 315 0 0 0 chr3 172369981 172370016 -55154562 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2315 71 0 0 chr3 172370016 172370299 -55154279 - AluY SINE Alu -27 284 2 1914 117 0 84 chr3 172370299 172370455 -55154123 - AluSg SINE Alu -191 119 1 209 339 16 0 chr3 172370710 172370772 -55153806 - L2 LINE L2 -206 3066 3004 22 0 0 0 chr3 172371951 172371973 -55152605 + AT_rich Low_complexity Low_complexity 1 22 0 655 281 63 18 chr3 172374142 172374363 -55150215 - MIR SINE MIR -19 243 13 211 304 14 0 chr3 172374364 172374433 -55150145 + MIR SINE MIR 184 253 -9 195 327 62 18 chr3 172374511 172374624 -55149954 + L2 LINE L2 2202 2319 -995 749 224 51 0 chr3 172374650 172374846 -55149732 + L1MD2 LINE L1 6153 6358 -1 266 351 30 22 chr3 172375231 172375365 -55149213 + MER5A DNA MER1_type 55 189 0 315 313 62 31 chr3 172376184 172376344 -55148234 - L1MC5 LINE L1 -16 7945 7781 3750 179 49 14 chr3 172376482 172377456 -55147122 - L1MB7 LINE L1 -3 6181 5176 13435 136 50 15 chr3 172378419 172380160 -55144418 - Tigger1 DNA MER2_type 0 2418 573 2414 75 0 3 chr3 172380160 172380465 -55144113 - AluY SINE Alu -7 304 1 13435 136 50 15 chr3 172380465 172381059 -55143519 - Tigger1 DNA MER2_type -1845 573 1 1807 160 10 10 chr3 172381216 172381528 -55143050 - AluJo SINE Alu 0 312 1 540 229 45 56 chr3 172381781 172381960 -55142618 - MIR SINE MIR -78 184 8 193 271 57 0 chr3 172382286 172382356 -55142222 + MIR3 SINE MIR 134 207 -1 2330 112 0 0 chr3 172382685 172382997 -55141581 - AluSx SINE Alu 0 312 1 401 292 0 17 chr3 172383016 172383136 -55141442 + MER5B DNA MER1_type 56 173 -5 24 32 0 0 chr3 172383207 172383238 -55141340 + AT_rich Low_complexity Low_complexity 1 31 0 33 0 0 0 chr3 172386647 172386680 -55137898 + AT_rich Low_complexity Low_complexity 1 33 0 268 185 283 11 chr3 172387238 172387422 -55137156 + MER20B DNA MER1_type 539 772 -11 1613 133 70 0 chr3 172388539 172388841 -55135737 + MER33 DNA MER1_type 1 323 -1 200 239 23 80 chr3 172389414 172389502 -55135076 - L2 LINE L2 -42 3230 3148 350 344 66 69 chr3 172389512 172389846 -55134732 - L2 LINE L2 -19 3253 2921 637 250 164 10 chr3 172390469 172390677 -55133901 - MIR SINE MIR -21 241 2 21 0 0 0 chr3 172390960 172390981 -55133597 + AT_rich Low_complexity Low_complexity 1 21 0 32 0 0 0 chr3 172391255 172391287 -55133291 + AT_rich Low_complexity Low_complexity 1 32 0 1545 172 0 78 chr3 172391301 172391609 -55132969 - AluJo SINE Alu -28 284 1 339 276 159 65 chr3 172391667 172391899 -55132679 + MIR SINE MIR 8 261 -1 292 288 51 8 chr3 172391968 172392086 -55132492 + MIR SINE MIR 90 212 -50 560 257 90 0 chr3 172392152 172392296 -55132282 + MER58C DNA MER1_type 58 214 -1 269 274 39 20 chr3 172392969 172393071 -55131507 + MIR SINE MIR 9 112 -150 4692 32 0 5 chr3 172393321 172393883 -55130695 + L1PA4 LINE L1 5594 6152 -3 219 133 0 0 chr3 172397235 172397280 -55127298 + (T)n Simple_repeat Simple_repeat 1 45 0 1770 175 10 3 chr3 172397521 172397813 -55126765 - AluJb SINE Alu -14 298 5 25 75 0 0 chr3 172398899 172398952 -55125626 + AT_rich Low_complexity Low_complexity 1 53 0 426 285 46 7 chr3 172400357 172400508 -55124070 + CT-rich Low_complexity Low_complexity 3 159 0 1302 176 51 16 chr3 172401108 172401421 -55123157 + MER33 DNA MER1_type 1 324 0 452 326 97 80 chr3 172401674 172402085 -55122493 + L2 LINE L2 2855 3272 0 201 316 92 0 chr3 172402161 172402237 -55122341 + L2 LINE L2 3152 3234 -38 2413 97 0 0 chr3 172404460 172404770 -55119808 + AluSg SINE Alu 1 310 0 962 225 30 0 chr3 172405894 172406094 -55118484 - MER20B DNA MER1_type -11 208 3 213 345 36 36 chr3 172406245 172406329 -55118249 - MER5A DNA MER1_type -1 188 105 2223 133 51 23 chr3 172406335 172406689 -55117889 + THE1B LTR MaLR 1 364 0 12158 95 14 1 chr3 172406689 172408249 -55116329 + THE1B-int LTR MaLR 1 1580 0 2197 142 72 20 chr3 172408249 172408595 -55115983 + THE1B LTR MaLR 1 364 0 184 100 0 17 chr3 172408602 172408638 -55115940 - MER5A DNA MER1_type -151 38 4 4288 153 14 14 chr3 172409029 172409729 -55114849 + L1PA16 LINE L1 5466 6165 -1 260 132 0 0 chr3 172409782 172409820 -55114758 + L1PA14 LINE L1 5898 5935 -226 189 224 60 15 chr3 172410643 172410710 -55113868 + L2 LINE L2 1932 2001 -1313 23 0 0 0 chr3 172410859 172410882 -55113696 + AT_rich Low_complexity Low_complexity 1 23 0 346 143 57 14 chr3 172411166 172411236 -55113342 - MSTD LTR MaLR -17 379 307 329 293 111 48 chr3 172412010 172412218 -55112360 + MIR SINE MIR 34 254 -8 631 241 114 49 chr3 172413596 172413841 -55110737 + MIR SINE MIR 1 261 -1 1808 84 0 9 chr3 172414872 172415098 -55109480 + AluSg/x SINE Alu 79 302 -8 558 221 63 8 chr3 172415638 172415765 -55108813 + MER94 DNA DNA 1 134 0 1677 210 0 3 chr3 172416570 172416875 -55107703 - AluJo SINE Alu -8 304 1 473 163 158 141 chr3 172417775 172417910 -55106668 + MER5A DNA MER1_type 3 144 -45 1820 159 0 7 chr3 172417910 172418251 -55106327 - AluSx SINE Alu 0 339 1 473 163 158 141 chr3 172418251 172418298 -55106280 + MER5A DNA MER1_type 144 189 0 607 305 57 14 chr3 172418973 172419183 -55105395 - MIR SINE MIR 0 262 44 492 304 137 26 chr3 172419928 172420155 -55104423 + MIR SINE MIR 3 254 -8 308 321 66 0 chr3 172420228 172420365 -55104213 - L1MC4a LINE L1 -1932 5876 5731 464 253 106 41 chr3 172420895 172420988 -55103590 + L2 LINE L2 2644 2729 -585 201 74 0 0 chr3 172420988 172421015 -55103563 + (TG)n Simple_repeat Simple_repeat 1 27 0 464 253 106 41 chr3 172421015 172421166 -55103412 + L2 LINE L2 2729 2904 -410 258 274 14 14 chr3 172421344 172421417 -55103161 + L2 LINE L2 3231 3303 -10 21 0 0 0 chr3 172422692 172422713 -55101865 + AT_rich Low_complexity Low_complexity 1 21 0 338 244 31 63 chr3 172425017 172425144 -55099434 + L1M4 LINE L1 4987 5109 -1037 2056 96 37 0 chr3 172425352 172425622 -55098956 + AluSp SINE Alu 1 280 -33 396 0 0 0 chr3 172425622 172425666 -55098912 + (CA)n Simple_repeat Simple_repeat 1 44 0 302 321 0 15 chr3 172426217 172426351 -55098227 + GA-rich Low_complexity Low_complexity 1 132 0 641 88 0 0 chr3 172426798 172426878 -55097700 + MADE1 DNA Mariner 1 80 0 240 336 16 40 chr3 172426926 172427051 -55097527 + L2 LINE L2 3191 3312 -1 1025 266 113 37 chr3 172427634 172427894 -55096684 - L1ME3 LINE L1 -309 5853 5614 2157 89 34 7 chr3 172427894 172428187 -55096391 - AluSg SINE Alu -9 301 1 2370 87 6 3 chr3 172428187 172428498 -55096080 - AluSq SINE Alu 0 313 1 1025 266 113 37 chr3 172428498 172428902 -55095676 - L1ME3 LINE L1 -547 5615 5138 2407 90 0 0 chr3 172428984 172429294 -55095284 - AluSx SINE Alu -2 310 1 4409 207 160 17 chr3 172429299 172430566 -55094012 + Charlie1a DNA MER1_type 1 1449 -6 21 0 0 0 chr3 172430725 172430746 -55093832 + AT_rich Low_complexity Low_complexity 1 21 0 309 325 84 32 chr3 172431686 172431840 -55092738 + MIR3 SINE MIR 20 181 -27 231 170 0 0 chr3 172432071 172432118 -55092460 + MER116 DNA Mariner 15 61 -19 237 169 17 17 chr3 172432481 172432540 -55092038 - L1MC4 LINE L1 -1326 6716 6658 43416 36 25 0 chr3 172432620 172438620 -55085958 + L1PA2 LINE L1 2 6153 -2 318 160 40 13 chr3 172438751 172438826 -55085752 - AluS SINE Alu -223 77 1 522 294 21 7 chr3 172438882 172439025 -55085553 - MIR SINE MIR -115 147 3 208 297 171 27 chr3 172440084 172440195 -55084383 + L2 LINE L2 3187 3313 0 516 213 74 16 chr3 172441319 172441441 -55083137 + MER94 DNA DNA 4 132 -2 863 183 53 0 chr3 172441442 172441611 -55082967 - MER5A DNA MER1_type -11 178 1 1965 133 0 29 chr3 172442174 172442489 -55082089 - AluSg SINE Alu -4 306 1 249 330 0 41 chr3 172444647 172444744 -55079834 - L2 LINE L2 -28 3285 3193 394 200 53 113 chr3 172445590 172445740 -55078838 - MIR SINE MIR -17 245 105 231 274 204 18 chr3 172446117 172446230 -55078348 - MIR SINE MIR -88 174 41 1972 121 0 71 chr3 172446394 172446717 -55077861 + AluSg SINE Alu 6 305 -5 245 236 217 28 chr3 172447460 172447566 -55077012 - L1MC4 LINE L1 -1946 5862 5737 184 30 61 0 chr3 172447634 172447667 -55076911 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 440 222 67 52 chr3 172449580 172449715 -55074863 - MLT1A1 LTR MaLR -228 137 1 184 351 74 14 chr3 172450287 172450435 -55074143 - L2 LINE L2 -219 3053 2897 265 325 50 8 chr3 172450496 172450616 -55073962 - MIR3 SINE MIR -69 139 15 597 221 61 22 chr3 172451897 172452078 -55072500 - MER20 DNA MER1_type 0 219 32 226 208 9 142 chr3 172452356 172452462 -55072116 + MIR SINE MIR 98 189 -73 1262 88 6 0 chr3 172453406 172453577 -55071001 - AluSg/x SINE Alu -7 305 134 2306 65 45 0 chr3 172453577 172453867 -55070711 - AluY SINE Alu -7 304 2 2321 87 0 16 chr3 172454065 172454377 -55070201 - AluY SINE Alu -4 307 1 2113 261 110 30 chr3 172454927 172456011 -55068567 + L1MC4 LINE L1 6732 7902 -140 210 304 0 49 chr3 172456020 172456122 -55068456 + (TATG)n Simple_repeat Simple_repeat 4 100 0 1071 126 6 0 chr3 172456344 172456503 -55068075 - L1PA14 LINE L1 -554 5607 5448 * 3453 106 26 3 chr3 172456498 172457028 -55067550 + L1PA14 LINE L1 5600 6143 -18 256 278 62 21 chr3 172457086 172457183 -55067395 - L2 LINE L2 -14 3299 3199 288 172 0 0 chr3 172457430 172457488 -55067090 + T-rich Low_complexity Low_complexity 1 58 0 220 333 108 38 chr3 172459524 172459737 -55064841 + L2 LINE L2 1706 1933 -1381 1996 143 54 8 chr3 172459766 172460136 -55064442 - L1MB3 LINE L1 -1 6182 5796 2447 70 3 0 chr3 172460560 172460861 -55063717 + AluSp SINE Alu 1 302 -11 715 323 19 0 chr3 172461108 172461377 -55063201 + L1ME3A LINE L1 5562 5835 -335 244 312 46 37 chr3 172461425 172461534 -55063044 - MIR SINE MIR -67 141 32 1994 112 37 0 chr3 172462532 172462836 -55061742 + AluSc SINE Alu 1 314 0 2496 231 75 45 chr3 172463018 172463918 -55060660 + L1ME2 LINE L1 5222 6155 -9 254 294 35 0 chr3 172464721 172464806 -55059772 - MIR SINE MIR -76 186 99 1166 148 119 0 chr3 172464824 172465034 -55059544 + MER46A DNA MER2_type 1 235 -1 1681 107 11 57 chr3 172465138 172465401 -55059177 - AluSg SINE Alu -6 304 54 196 313 175 50 chr3 172465703 172466000 -55058578 + L2 LINE L2 2638 2971 -343 202 273 0 0 chr3 172466425 172466469 -55058109 + (TCCA)n Simple_repeat Simple_repeat 1 44 0 675 139 90 0 chr3 172466540 172466662 -55057916 - MER85 DNA T2_type -3 136 4 203 175 0 0 chr3 172468358 172468398 -55056180 + T-rich Low_complexity Low_complexity 1 40 0 256 282 173 9 chr3 172468415 172468635 -55055943 - HAL1 LINE L1 -7 2500 2245 2217 92 3 10 chr3 172469976 172470298 -55054280 - AluSp SINE Alu 0 313 1 264 133 0 0 chr3 172470386 172470431 -55054147 + MLT1A1 LTR MaLR 1 45 -320 1048 99 25 0 chr3 172470431 172470592 -55053986 + L1PB1 LINE L1 5813 5977 -174 582 137 29 0 chr3 172470592 172470694 -55053884 + AluY SINE Alu 1 105 -206 288 279 40 66 chr3 172471134 172471305 -55053273 - MIR SINE MIR -55 207 45 316 299 144 23 chr3 172471383 172471568 -55053010 + MIR SINE MIR 1 206 -56 414 39 0 0 chr3 172471624 172471676 -55052902 + (CA)n Simple_repeat Simple_repeat 1 52 0 1466 145 5 5 chr3 172472118 172472332 -55052246 + AluJo SINE Alu 3 216 -96 245 260 31 31 chr3 172472455 172472582 -55051996 - AluJb SINE Alu -42 260 134 1105 224 91 0 chr3 172473137 172473401 -55051177 + MLT1A1 LTR MaLR 76 363 -2 26 30 0 0 chr3 172473738 172473771 -55050807 + AT_rich Low_complexity Low_complexity 1 33 0 397 237 68 8 chr3 172474106 172474224 -55050354 - MER94 DNA DNA -9 125 1 348 250 125 0 chr3 172474384 172474504 -55050074 + MIR SINE MIR 125 259 -3 395 280 206 18 chr3 172474943 172475161 -55049417 + MIR SINE MIR 3 261 -1 818 256 166 50 chr3 172475493 172476067 -55048511 + MER20B DNA MER1_type 5 644 -139 3143 192 79 9 chr3 172476082 172476827 -55047751 + Tigger6a DNA MER2_type 1 797 -286 2054 115 16 40 chr3 172477271 172477575 -55047003 - AluSg SINE Alu -13 297 1 21 36 0 0 chr3 172477723 172477751 -55046827 + AT_rich Low_complexity Low_complexity 1 28 0 21 71 0 0 chr3 172477926 172477968 -55046610 + AT_rich Low_complexity Low_complexity 1 42 0 207 125 0 0 chr3 172478533 172478573 -55046005 + (T)n Simple_repeat Simple_repeat 1 40 0 1897 117 60 7 chr3 172479678 172479960 -55044618 - AluSg SINE Alu -13 297 1 1760 71 5 0 chr3 172479968 172480180 -55044398 - AluSp SINE Alu -19 294 82 504 137 0 0 chr3 172480966 172481068 -55043510 + (CA)n Simple_repeat Simple_repeat 2 103 0 926 273 119 26 chr3 172483695 172484116 -55040462 + LTR16B LTR ERVL 1 460 -4 21 36 0 0 chr3 172485109 172485137 -55039441 + AT_rich Low_complexity Low_complexity 1 28 0 183 80 0 0 chr3 172485246 172485271 -55039307 + (TA)n Simple_repeat Simple_repeat 2 26 0 679 180 73 22 chr3 172486163 172486341 -55038237 - MER3 DNA MER1_type -22 187 1 413 120 0 27 chr3 172486710 172486785 -55037793 + (TTTTC)n Simple_repeat Simple_repeat 2 74 0 269 293 24 0 chr3 172486786 172486868 -55037710 + CT-rich Low_complexity Low_complexity 3 86 0 1178 145 0 6 chr3 172486872 172487051 -55037527 - AluSg/x SINE Alu -12 298 121 2373 222 65 8 chr3 172488882 172489629 -55034949 + L1MB7 LINE L1 5211 6005 -179 225 324 165 22 chr3 172490178 172490360 -55034218 - L2 LINE L2 -18 3254 3047 578 304 61 77 chr3 172490663 172490872 -55033706 - L2 LINE L2 -943 2371 2160 2206 125 0 0 chr3 172490872 172491177 -55033401 + AluSx SINE Alu 1 305 -7 578 304 61 77 chr3 172491177 172491644 -55032934 - L2 LINE L2 -1154 2160 1706 2139 85 28 0 chr3 172491685 172491968 -55032610 + AluSx SINE Alu 1 291 -21 350 278 48 16 chr3 172492909 172493035 -55031543 - MIR SINE MIR -77 185 56 270 243 0 14 chr3 172493240 172493314 -55031264 + Charlie8 DNA MER1_type 87 159 -2258 477 0 0 0 chr3 172494924 172494977 -55029601 + (TG)n Simple_repeat Simple_repeat 2 54 0 180 306 0 0 chr3 172495005 172495041 -55029537 + L2 LINE L2 3151 3186 -86 296 307 74 22 chr3 172495073 172495217 -55029361 - MIR SINE MIR -67 141 1 293 299 21 47 chr3 172495295 172495466 -55029112 + MIR SINE MIR 45 207 -55 1794 162 0 37 chr3 172496867 172497163 -55027415 - AluJb SINE Alu -26 286 2 271 279 92 64 chr3 172497902 172498185 -55026393 + L2 LINE L2 2593 2883 -431 185 347 21 42 chr3 172498261 172498356 -55026222 + L2 LINE L2 3004 3096 -176 517 263 48 97 chr3 172498690 172498945 -55025633 + MIR SINE MIR 3 250 -12 536 324 51 0 chr3 172499169 172499345 -55025233 + MIR SINE MIR 8 192 -70 241 338 0 0 chr3 172499372 172499440 -55025138 + MER5A DNA MER1_type 119 186 -3 180 111 0 0 chr3 172502404 172502431 -55022147 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 587 311 86 5 chr3 172504702 172504911 -55019667 + MIR SINE MIR 29 254 -8 599 330 10 10 chr3 172506005 172506208 -55018370 + MIR SINE MIR 35 237 -25 396 291 162 17 chr3 172506423 172506602 -55017976 - MIR SINE MIR -42 220 16 216 259 0 0 chr3 172507309 172507363 -55017215 + (CATATA)n Simple_repeat Simple_repeat 4 57 0 5097 116 3 1 chr3 172507408 172508159 -55016419 - L1PA15 LINE L1 -3 6162 5411 374 285 53 73 chr3 172508195 172508441 -55016137 - L1MC/D LINE L1 -2020 5788 5548 2195 118 0 0 chr3 172508467 172508763 -55015815 + AluSg1 SINE Alu 1 296 -13 22 0 0 0 chr3 172508804 172508826 -55015752 + AT_rich Low_complexity Low_complexity 1 22 0 207 100 0 0 chr3 172508847 172508877 -55015701 + (TTTC)n Simple_repeat Simple_repeat 2 31 0 2102 109 20 7 chr3 172509163 172509467 -55015111 - AluSx SINE Alu -2 310 3 968 195 80 13 chr3 172509479 172509705 -55014873 - MER58B DNA MER1_type -14 327 87 1468 161 75 0 chr3 172509705 172509985 -55014593 - L1MA4 LINE L1 -40 6260 5960 226 182 0 0 chr3 172509982 172510026 -55014552 + L1MA3 LINE L1 6262 6305 0 * 471 202 0 32 chr3 172510027 172510121 -55014457 - MER58B DNA MER1_type -250 91 1 269 352 0 0 chr3 172510746 172510834 -55013744 + MIR3 SINE MIR 113 200 -8 22 0 0 0 chr3 172515118 172515140 -55009438 + AT_rich Low_complexity Low_complexity 1 22 0 5610 37 3 3 chr3 172516249 172516924 -55007654 - L1PA3 LINE L1 -3 6152 5478 601 230 67 6 chr3 172517090 172517268 -55007310 + MER5A DNA MER1_type 1 189 0 295 255 39 49 chr3 172517541 172517643 -55006935 - MIR SINE MIR -60 202 102 2298 112 3 0 chr3 172520174 172520486 -55004092 - AluSq SINE Alu 0 313 1 24 109 0 0 chr3 172521576 172521677 -55002901 + AT_rich Low_complexity Low_complexity 1 101 0 216 341 48 24 chr3 172522024 172522150 -55002428 - L2 LINE L2 -63 3250 3122 405 319 81 11 chr3 172522423 172522608 -55001970 - MIR SINE MIR -46 216 19 184 355 103 37 chr3 172522731 172522838 -55001740 + L2 LINE L2 3194 3307 -6 264 59 0 0 chr3 172523010 172523044 -55001534 + (A)n Simple_repeat Simple_repeat 1 34 0 674 171 17 0 chr3 172524132 172524249 -55000329 - FLAM_C SINE Alu -20 123 5 33 0 0 0 chr3 172525081 172525114 -54999464 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr3 172525610 172525633 -54998945 + AT_rich Low_complexity Low_complexity 1 23 0 1827 144 42 23 chr3 172526639 172526992 -54997586 - MER46B DNA MER2_type 0 236 2 2787 7 0 0 chr3 172528528 172528836 -54995742 + AluYa5 SINE Alu 1 308 -3 21 0 0 0 chr3 172529129 172529150 -54995428 + AT_rich Low_complexity Low_complexity 1 21 0 1136 251 109 36 chr3 172529284 172529723 -54994855 + L1ME3A LINE L1 5694 6164 -6 1729 171 26 10 chr3 172530786 172531091 -54993487 + AluJo SINE Alu 1 310 -2 194 128 43 0 chr3 172531287 172531334 -54993244 + T-rich Low_complexity Low_complexity 5 53 0 21 36 0 0 chr3 172531741 172531769 -54992809 + AT_rich Low_complexity Low_complexity 1 28 0 200 200 0 0 chr3 172532241 172532276 -54992302 + CT-rich Low_complexity Low_complexity 2 36 0 221 258 17 121 chr3 172532973 172533106 -54991472 - MIR SINE MIR -64 144 65 299 239 0 0 chr3 172533165 172533236 -54991342 - MER112 DNA MER1_type -12 248 178 299 237 10 52 chr3 172533374 172533471 -54991107 - MER112 DNA MER1_type -134 126 34 1814 169 37 6 chr3 172533600 172533950 -54990628 - L1PA16 LINE L1 -5 6161 5801 560 337 21 0 chr3 172534212 172534399 -54990179 + MIR3 SINE MIR 18 208 0 24 0 0 0 chr3 172536269 172536293 -54988285 + AT_rich Low_complexity Low_complexity 1 24 0 797 307 186 1 chr3 172536704 172537404 -54987174 + L2 LINE L2 2467 3307 -6 206 310 46 0 chr3 172538135 172538222 -54986356 - MIR SINE MIR -8 254 164 195 160 0 80 chr3 172538451 172538501 -54986077 + MER5A DNA MER1_type 116 161 -28 355 250 19 46 chr3 172539082 172539190 -54985388 + L2 LINE L2 3171 3275 -38 23 54 0 0 chr3 172540116 172540153 -54984425 + AT_rich Low_complexity Low_complexity 1 37 0 268 275 117 8 chr3 172541547 172541667 -54982911 + MIR SINE MIR 102 234 -28 22 0 0 0 chr3 172542710 172542732 -54981846 + AT_rich Low_complexity Low_complexity 1 22 0 1317 68 0 0 chr3 172543254 172543431 -54981147 + (CATTT)n Simple_repeat Simple_repeat 4 180 0 2133 123 0 3 chr3 172543431 172543724 -54980854 - AluSg SINE Alu -14 296 5 241 342 53 9 chr3 172545358 172545472 -54979106 + L2 LINE L2 3195 3313 0 251 53 0 26 chr3 172545799 172545837 -54978741 + (TTTTC)n Simple_repeat Simple_repeat 4 40 0 653 248 108 50 chr3 172547545 172547868 -54976710 - L1MC4 LINE L1 -2 8040 7699 * 2156 252 98 54 chr3 172547836 172548844 -54975734 - L1MC4a LINE L1 -342 7466 6414 2130 101 0 0 chr3 172548937 172549242 -54975336 + AluSx SINE Alu 5 309 0 469 235 221 42 chr3 172549242 172549527 -54975051 - L1MC4a LINE L1 -1395 6413 6078 608 187 32 96 chr3 172549753 172549940 -54974638 - MER5B DNA MER1_type -3 175 1 196 250 78 47 chr3 172549940 172550004 -54974574 + MIR SINE MIR 9 74 -188 321 265 101 58 chr3 172550071 172550260 -54974318 + L1ME LINE L1 5539 5735 -386 22 0 0 0 chr3 172552149 172552171 -54972407 + AT_rich Low_complexity Low_complexity 1 22 0 304 326 41 0 chr3 172553027 172553125 -54971453 + MER5B DNA MER1_type 1 102 -76 204 140 60 0 chr3 172553145 172553195 -54971383 + T-rich Low_complexity Low_complexity 1 53 0 703 319 33 4 chr3 172553511 172553752 -54970826 - MIR SINE MIR -1 261 14 21 0 0 0 chr3 172554408 172554429 -54970149 + AT_rich Low_complexity Low_complexity 1 21 0 2311 93 0 0 chr3 172554982 172555283 -54969295 + AluSq SINE Alu 1 301 -12 189 296 56 0 chr3 172555977 172556031 -54968547 + L2 LINE L2 2672 2728 -586 657 297 184 13 chr3 172556070 172556450 -54968128 + L2 LINE L2 2806 3250 -63 2239 104 0 29 chr3 172558406 172558714 -54965864 - AluSx SINE Alu -13 299 1 1396 175 108 11 chr3 172560017 172560285 -54964293 + AluJb SINE Alu 1 294 -18 2186 104 7 16 chr3 172560329 172560636 -54963942 - AluSq SINE Alu -9 304 1 419 320 23 8 chr3 172565462 172565590 -54958988 + L2 LINE L2 3180 3309 -4 377 320 26 31 chr3 172565823 172566051 -54958527 - L2 LINE L2 -722 2592 2366 2363 99 7 0 chr3 172566641 172566945 -54957633 + AluSp SINE Alu 1 306 -7 343 366 127 26 chr3 172567149 172567496 -54957082 + L2 LINE L2 2844 3225 -47 1526 284 58 7 chr3 172567584 172568157 -54956421 + HsTC2 DNA Tc2 29 630 -1268 1425 126 56 0 chr3 172568244 172568475 -54956103 - Tigger3(Golem) DNA MER2_type -14 3015 2772 555 275 0 7 chr3 172568472 172568614 -54955964 - Tigger3(Golem) DNA MER2_type -2887 142 2 * 251 234 0 52 chr3 172568614 172568691 -54955887 + (TATATG)n Simple_repeat Simple_repeat 5 77 0 353 221 90 16 chr3 172569151 172569273 -54955305 - MER58B DNA MER1_type 0 341 211 2390 103 0 0 chr3 172570031 172570343 -54954235 - AluSx SINE Alu 0 312 1 566 225 52 38 chr3 172570343 172570610 -54953968 + L1MC5 LINE L1 7646 7916 -45 1605 170 37 96 chr3 172570695 172570749 -54953829 - L1MB7 LINE L1 -16 6168 6112 1797 131 41 45 chr3 172570749 172571039 -54953539 + AluSx SINE Alu 1 289 -23 1605 170 37 96 chr3 172571039 172571125 -54953453 - L1MB7 LINE L1 -72 6112 6022 2175 114 0 9 chr3 172571125 172571440 -54953138 - AluSp SINE Alu -1 312 1 1605 170 37 96 chr3 172571440 172571787 -54952791 - L1MB7 LINE L1 -162 6022 5709 201 418 0 22 chr3 172573353 172573487 -54951091 + L2 LINE L2 2851 2981 -291 627 239 73 69 chr3 172573570 172573817 -54950761 + MIR SINE MIR 13 260 -2 191 156 31 0 chr3 172573938 172573970 -54950608 + L2 LINE L2 3194 3226 -46 21 0 0 0 chr3 172574058 172574079 -54950499 + AT_rich Low_complexity Low_complexity 1 21 0 198 167 0 0 chr3 172574138 172574174 -54950404 + (TATG)n Simple_repeat Simple_repeat 4 39 0 407 225 65 30 chr3 172575125 172575294 -54949284 - L1ME4a LINE L1 -8 6113 5939 1536 206 67 32 chr3 172577508 172577983 -54946595 - L1MA9 LINE L1 -38 6274 5783 669 281 22 0 chr3 172578272 172578457 -54946121 + MER5A DNA MER1_type 1 189 0 533 286 45 50 chr3 172578479 172578678 -54945900 - MIR SINE MIR -50 212 15 208 156 67 0 chr3 172578786 172578831 -54945747 - L3 LINE CR1 -1 1576 1529 273 259 71 18 chr3 172579367 172579479 -54945099 - MIR SINE MIR -47 215 98 468 257 13 13 chr3 172579560 172579712 -54944866 - AluSp/q SINE Alu 0 313 162 22 0 0 0 chr3 172581586 172581608 -54942970 + AT_rich Low_complexity Low_complexity 1 22 0 1020 177 0 39 chr3 172581875 172582056 -54942522 + FAM SINE Alu 1 174 -1 2069 126 0 43 chr3 172582697 172582886 -54941692 - AluSx SINE Alu 0 312 141 2371 108 0 0 chr3 172582886 172583193 -54941385 - AluSg1 SINE Alu -2 307 1 2069 126 0 43 chr3 172583193 172583329 -54941249 - AluSx SINE Alu -171 141 1 22 0 0 0 chr3 172584698 172584720 -54939858 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 172587077 172587105 -54937473 + AT_rich Low_complexity Low_complexity 1 28 0 583 261 43 12 chr3 172587213 172587374 -54937204 + MIR SINE MIR 12 177 -85 208 381 52 0 chr3 172587380 172587477 -54937101 - L2 LINE L2 -2 3311 3210 358 343 48 5 chr3 172587604 172587811 -54936767 + L2 LINE L2 2916 3131 -182 1268 123 52 0 chr3 172587817 172588028 -54936550 + MER30 DNA MER1_type 9 230 0 566 259 53 12 chr3 172588033 172588203 -54936375 + L2 LINE L2 3137 3313 0 34 18 0 36 chr3 172588483 172588502 -54936076 + AT_rich Low_complexity Low_complexity 1 19 -35 2061 124 16 25 chr3 172588502 172588817 -54935761 + AluSx SINE Alu 1 312 0 34 18 0 36 chr3 172588817 172588853 -54935725 + AT_rich Low_complexity Low_complexity 19 54 0 1131 187 57 64 chr3 172589402 172590071 -54934507 - MER4A LTR ERV1 0 683 1 449 246 16 16 chr3 172591953 172592075 -54932503 - MIR SINE MIR 0 262 141 23 33 0 0 chr3 172592449 172592479 -54932099 + AT_rich Low_complexity Low_complexity 1 30 0 2090 123 19 13 chr3 172592667 172592975 -54931603 + AluSx SINE Alu 1 310 -2 730 273 67 45 chr3 172595036 172595366 -54929212 - MER44D DNA MER2_type 0 609 3 644 175 42 0 chr3 172595854 172595974 -54928604 - MER44D DNA MER2_type -214 395 1 670 198 18 42 chr3 172596038 172596205 -54928373 + MIR SINE MIR 99 261 -1 2200 116 0 0 chr3 172596749 172597052 -54927526 - AluSx SINE Alu -9 303 1 22 0 0 0 chr3 172597187 172597209 -54927369 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 172597830 172597852 -54926726 + AT_rich Low_complexity Low_complexity 1 22 0 397 267 123 55 chr3 172598015 172598307 -54926271 - L1ME3A LINE L1 -227 5935 5624 318 332 25 10 chr3 172598345 172598541 -54926037 - L1ME3A LINE L1 -628 5534 5336 213 121 0 0 chr3 172599930 172599963 -54924615 + (T)n Simple_repeat Simple_repeat 1 33 0 759 252 0 0 chr3 172602416 172602563 -54922015 + FRAM SINE Alu 1 147 -19 252 151 0 75 chr3 172602895 172602948 -54921630 - L2 LINE L2 -2 3311 3263 2056 148 3 3 chr3 172603715 172604026 -54920552 - AluJb SINE Alu -1 311 1 455 284 45 11 chr3 172604987 172605163 -54919415 + MIR SINE MIR 11 192 -70 1566 174 47 30 chr3 172606602 172606901 -54917677 + AluJb SINE Alu 1 304 -8 431 231 121 18 chr3 172606936 172607066 -54917512 + MIR SINE MIR 10 149 -63 904 189 23 60 chr3 172608974 172609110 -54915468 - MER3 DNA MER1_type 0 209 82 553 315 0 6 chr3 172609110 172609288 -54915290 + MER45A DNA AcHobo 1 177 -1 904 189 23 60 chr3 172609288 172609368 -54915210 - MER3 DNA MER1_type -127 82 1 603 292 94 17 chr3 172609571 172609804 -54914774 + MIR SINE MIR 2 252 -10 1929 93 97 7 chr3 172610799 172611077 -54913501 - AluSx SINE Alu -9 303 1 390 245 245 67 chr3 172611302 172611555 -54913023 + L1MEd LINE L1 330 627 -5492 216 243 27 27 chr3 172611771 172611845 -54912733 + MIR SINE MIR 140 213 -49 185 93 70 0 chr3 172613243 172613286 -54911292 + (CCCCAG)n Simple_repeat Simple_repeat 4 49 0 255 232 204 22 chr3 172613881 172614062 -54910516 + MER113 DNA MER1_type? 5 218 -303 1974 103 75 7 chr3 172614413 172614695 -54909883 - AluSx SINE Alu -11 301 1 253 250 120 0 chr3 172614861 172614953 -54909625 + L3 LINE CR1 1452 1554 -23 1906 223 116 27 chr3 172614967 172615795 -54908783 - L1MC4 LINE L1 -1 8041 7140 772 195 0 93 chr3 172615787 172616044 -54908534 - L1MA4 LINE L1 0 6300 6068 * 3473 45 18 11 chr3 172616116 172616557 -54908021 - MLT2A1 LTR ERVL 0 444 1 13278 65 11 0 chr3 172616557 172618310 -54906268 - HERVL-A1 LTR ERVL 0 5654 3883 2102 130 13 0 chr3 172618326 172618633 -54905945 - AluSx SINE Alu 0 312 2 32 0 0 0 chr3 172618794 172618826 -54905752 + AT_rich Low_complexity Low_complexity 1 32 0 2034 158 34 63 chr3 172619257 172619731 -54904847 - MLT1C LTR MaLR 0 467 8 23 0 0 0 chr3 172620021 172620044 -54904534 + AT_rich Low_complexity Low_complexity 1 23 0 1182 114 0 0 chr3 172620044 172620202 -54904376 - AluSg/x SINE Alu -26 286 129 266 51 77 0 chr3 172620202 172620241 -54904337 - L1PA7 LINE L1 -7 6165 6106 22 70 0 0 chr3 172620653 172620696 -54903882 + AT_rich Low_complexity Low_complexity 1 43 0 2148 86 4 7 chr3 172621350 172621659 -54902919 + AluY SINE Alu 2 309 0 216 219 244 0 chr3 172621978 172622060 -54902518 + L2 LINE L2 3206 3307 -6 744 199 0 15 chr3 172622419 172622555 -54902023 - FRAM SINE Alu -21 155 22 195 69 0 0 chr3 172622573 172622602 -54901976 + (TG)n Simple_repeat Simple_repeat 2 30 0 216 258 15 91 chr3 172622856 172622988 -54901590 - L2 LINE L2 -235 3037 2916 309 284 37 80 chr3 172623160 172623322 -54901256 - MER5A DNA MER1_type -3 186 32 1289 226 139 22 chr3 172623606 172623825 -54900753 - Charlie1b DNA MER1_type -2247 514 322 1860 171 3 7 chr3 172623825 172624129 -54900449 - AluJb SINE Alu -9 303 1 1289 226 139 22 chr3 172624129 172624369 -54900209 - Charlie1b DNA MER1_type -2439 322 1 875 136 91 0 chr3 172624736 172624912 -54899666 + L1MA7 LINE L1 5994 6185 -106 591 206 73 0 chr3 172624972 172625108 -54899470 + MER46C DNA MER2_type 68 213 -125 292 213 0 33 chr3 172625224 172625285 -54899293 + MIR SINE MIR 177 235 -27 324 351 63 0 chr3 172625546 172625657 -54898921 - L2 LINE L2 -22 3250 3133 631 138 18 187 chr3 172625731 172625956 -54898622 - MER53 DNA DNA 0 189 3 204 196 39 20 chr3 172626455 172626506 -54898072 + GA-rich Low_complexity Low_complexity 4 55 0 229 337 56 0 chr3 172626702 172626791 -54897787 + MER96 DNA MER1_type? 82 175 0 207 0 0 0 chr3 172627947 172627970 -54896608 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 225 308 0 64 chr3 172628123 172628201 -54896377 + MIR SINE MIR 21 93 -115 743 264 74 25 chr3 172628779 172629021 -54895557 - MIR SINE MIR -6 256 3 204 270 63 0 chr3 172629080 172629143 -54895435 - MER91C DNA MER1_type -26 114 48 24 0 0 0 chr3 172630188 172630212 -54894366 + AT_rich Low_complexity Low_complexity 1 24 0 225 94 0 0 chr3 172632069 172632101 -54892477 + (T)n Simple_repeat Simple_repeat 1 32 0 346 185 43 43 chr3 172635690 172635782 -54888796 - L1MA9 LINE L1 -5 6307 6216 233 169 0 15 chr3 172635788 172635853 -54888725 + (TA)n Simple_repeat Simple_repeat 1 64 0 249 188 73 62 chr3 172635855 172635951 -54888627 - L1MA9 LINE L1 -69 6243 6147 1991 153 7 3 chr3 172636341 172636636 -54887942 + AluSq SINE Alu 1 296 -17 1921 167 3 0 chr3 172637034 172637340 -54887238 - AluJb SINE Alu -5 307 1 280 320 13 0 chr3 172637530 172637605 -54886973 - MIR SINE MIR -57 151 76 595 231 59 24 chr3 172637668 172637837 -54886741 - MER5B DNA MER1_type -3 175 1 225 397 45 11 chr3 172637846 172638025 -54886553 + MER5A DNA MER1_type 5 189 0 337 230 309 14 chr3 172638025 172638164 -54886414 - MER5A DNA MER1_type -9 180 1 2296 91 0 0 chr3 172638790 172639077 -54885501 + AluY SINE Alu 1 287 -24 25 31 0 0 chr3 172639673 172639705 -54884873 + AT_rich Low_complexity Low_complexity 1 32 0 1408 91 0 0 chr3 172640067 172640243 -54884335 - AluSp SINE Alu 0 313 138 1013 63 8 0 chr3 172640243 172640369 -54884209 + AluSq/x SINE Alu 7 133 -180 190 335 250 0 chr3 172641592 172641756 -54882822 - L2 LINE L2 -666 2648 2444 2632 121 14 12 chr3 172642280 172642703 -54881875 + MER57B LTR ERV1 1 424 -10 363 44 0 0 chr3 172643599 172643644 -54880934 + (CA)n Simple_repeat Simple_repeat 2 46 0 197 229 33 49 chr3 172644234 172644295 -54880283 + L2 LINE L2 3244 3303 -10 1412 109 4 78 chr3 172644329 172644559 -54880019 + AluSg/x SINE Alu 89 301 -11 237 313 0 0 chr3 172644943 172645023 -54879555 - Charlie8 DNA MER1_type -3 2414 2335 21 0 0 0 chr3 172645634 172645655 -54878923 + AT_rich Low_complexity Low_complexity 1 21 0 188 159 0 23 chr3 172646141 172646185 -54878393 + (TA)n Simple_repeat Simple_repeat 2 44 0 2079 108 3 57 chr3 172646583 172646899 -54877679 + AluSg SINE Alu 1 299 -11 186 312 13 13 chr3 172647198 172647275 -54877303 + L2 LINE L2 3167 3243 -70 302 270 270 12 chr3 172647607 172647770 -54876808 + MIR SINE MIR 42 246 -16 191 320 10 20 chr3 172647745 172647845 -54876733 - MIR SINE MIR -55 207 109 * 247 306 10 41 chr3 172647928 172648026 -54876552 - MIR SINE MIR -161 101 7 287 200 75 0 chr3 172648318 172648398 -54876180 + MIR SINE MIR 117 202 -60 1718 108 0 0 chr3 172648402 172648624 -54875954 + AluSc SINE Alu 1 222 -87 1147 99 0 0 chr3 172648624 172648775 -54875803 + AluSc SINE Alu 143 293 -16 326 324 19 9 chr3 172649399 172649504 -54875074 - MIR3 SINE MIR -43 165 60 429 318 17 28 chr3 172649620 172649799 -54874779 - MIR3 SINE MIR -16 192 16 2304 106 0 3 chr3 172652277 172652588 -54871990 - AluSg SINE Alu 0 310 1 22 35 0 0 chr3 172652665 172652694 -54871884 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 172652966 172652989 -54871589 + AT_rich Low_complexity Low_complexity 1 23 0 189 107 0 0 chr3 172653183 172653211 -54871367 + (TTTTC)n Simple_repeat Simple_repeat 2 29 0 483 18 0 0 chr3 172654289 172654345 -54870233 + (TG)n Simple_repeat Simple_repeat 2 57 0 208 261 101 0 chr3 172655735 172655804 -54868774 + MIR SINE MIR 126 201 -61 11424 171 62 7 chr3 172855879 172857935 -54666643 - L1M1 LINE L1 -5383 2182 15 631 289 83 30 chr3 172858638 172858939 -54665639 - MLT1J1 LTR MaLR -123 323 7 391 304 60 30 chr3 172859298 172859515 -54665063 + MIR SINE MIR 28 250 -12 189 147 0 0 chr3 172860289 172860323 -54664255 + (CA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr3 172861006 172861028 -54663550 + AT_rich Low_complexity Low_complexity 1 22 0 692 296 16 32 chr3 172861121 172861440 -54663138 + L1MC/D LINE L1 5282 5587 -575 361 380 76 48 chr3 172861692 172862282 -54662296 + L1ME3A LINE L1 4 610 -5509 405 284 112 65 chr3 172862317 172862747 -54661831 + L1ME3A LINE L1 3774 4223 -1906 397 276 109 66 chr3 172863152 172863758 -54660820 + L1ME3A LINE L1 4635 5266 -863 940 27 0 0 chr3 172863765 172863876 -54660702 - L1PA3 LINE L1 0 6155 6045 890 306 67 23 chr3 172863919 172864520 -54660058 + L1ME3A LINE L1 5325 5951 -202 324 297 60 60 chr3 172864570 172864755 -54659823 + L1ME3A LINE L1 5945 6129 -24 521 270 171 37 chr3 172864796 172865148 -54659430 + L1ME LINE L1 5355 5753 -400 26 50 0 0 chr3 172865944 172865984 -54658594 + AT_rich Low_complexity Low_complexity 1 40 0 586 0 13 13 chr3 172866860 172866935 -54657643 + (TAGA)n Simple_repeat Simple_repeat 4 78 0 207 0 0 0 chr3 172867403 172867426 -54657152 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1854 114 38 0 chr3 172867431 172867695 -54656883 - AluY SINE Alu -37 274 1 7622 27 0 0 chr3 172870370 172871569 -54653009 + L1PA4 LINE L1 4942 6144 -11 21 0 0 0 chr3 172871588 172871609 -54652969 + AT_rich Low_complexity Low_complexity 1 21 0 384 301 73 61 chr3 172871787 172872033 -54652545 + L2 LINE L2 3065 3313 0 1424 138 0 13 chr3 172872213 172872445 -54652133 + MER30 DNA MER1_type 2 230 0 2309 75 0 69 chr3 172873013 172873401 -54651177 - AluSg SINE Alu 0 365 1 1666 262 151 12 chr3 172873835 172874320 -54650258 + L1M4 LINE L1 208 759 -6100 1149 251 20 3 chr3 172874342 172874637 -54649941 + L1M4 LINE L1 4639 4938 -2019 235 300 42 4 chr3 172875327 172875460 -54649118 - MER5A DNA MER1_type -8 181 1 229 256 33 33 chr3 172875484 172875574 -54649004 - MIR SINE MIR 0 262 173 694 250 13 19 chr3 172875586 172875742 -54648836 - MIR SINE MIR -36 226 72 235 264 9 28 chr3 172875901 172876007 -54648571 + MER33 DNA MER1_type 1 104 -220 2735 130 84 4 chr3 172876337 172876791 -54647787 - MER41C LTR ERV1 -64 490 1 21 0 0 0 chr3 172878040 172878061 -54646517 + AT_rich Low_complexity Low_complexity 1 21 0 257 318 146 0 chr3 172878115 172878225 -54646353 - L2 LINE L2 -2 3311 3186 191 358 46 33 chr3 172878393 172878544 -54646034 + L2 LINE L2 3161 3313 0 2441 68 0 0 chr3 172878921 172879216 -54645362 + AluY SINE Alu 1 295 -16 186 167 0 0 chr3 172879226 172879262 -54645316 + (TGAA)n Simple_repeat Simple_repeat 3 38 0 2189 117 0 0 chr3 172880475 172880774 -54643804 - AluSx SINE Alu -13 299 1 2407 81 0 0 chr3 172881021 172881328 -54643250 - AluY SINE Alu -3 308 2 742 270 67 56 chr3 172881406 172881747 -54642831 - L1ME3A LINE L1 -326 6238 5894 330 282 72 80 chr3 172881831 172882150 -54642428 - L1ME3A LINE L1 -904 5636 5316 1656 153 6 50 chr3 172882150 172882470 -54642108 - AluSx SINE Alu -6 306 1 330 282 72 80 chr3 172882470 172882803 -54641775 - L1ME3A LINE L1 -1224 5316 4989 688 160 128 39 chr3 172882805 172882961 -54641617 + MLT1B LTR MaLR 93 262 -128 329 252 43 38 chr3 172882974 172883184 -54641394 - L1ME3A LINE L1 -1587 4953 4743 207 0 0 0 chr3 172884182 172884205 -54640373 + (TA)n Simple_repeat Simple_repeat 1 23 0 4065 191 64 18 chr3 172884526 172885639 -54638939 - L1MB3 LINE L1 -3 6180 5018 1493 161 47 138 chr3 172885639 172885770 -54638808 + MLT1B LTR MaLR 1 142 -248 2239 81 28 0 chr3 172885770 172886053 -54638525 - AluSg SINE Alu -19 291 1 1493 161 47 138 chr3 172886053 172886350 -54638228 + MLT1B LTR MaLR 142 390 0 1978 207 143 26 chr3 172886366 172886760 -54637818 - L1MD2 LINE L1 -1 6358 5875 13412 142 51 14 chr3 172886760 172887840 -54636738 - Tigger1 DNA MER2_type -1 2417 1378 2489 56 0 3 chr3 172887840 172888144 -54636434 + AluY SINE Alu 1 303 -8 13412 142 51 14 chr3 172888144 172889394 -54635184 - Tigger1 DNA MER2_type -1040 1378 1 1978 207 143 26 chr3 172889394 172889574 -54635004 - L1MD2 LINE L1 -484 5875 5717 467 196 101 6 chr3 172889576 172889734 -54634844 - L1ME3A LINE L1 -4023 2517 2345 558 304 41 6 chr3 172889751 172889922 -54634656 - MIR SINE MIR -75 187 11 26 30 0 0 chr3 172891107 172891140 -54633438 + AT_rich Low_complexity Low_complexity 1 33 0 368 298 57 8 chr3 172892075 172892199 -54632379 + L2 LINE L2 3184 3313 0 443 275 82 34 chr3 172892585 172892854 -54631724 + Tigger8 DNA MER2_type 285 566 -100 604 183 42 133 chr3 172893081 172893322 -54631256 - MER20 DNA MER1_type 0 219 1 202 308 46 0 chr3 172894642 172894707 -54629871 + L2 LINE L2 2704 2771 -543 190 293 218 11 chr3 172894993 172895167 -54629411 + L2 LINE L2 3104 3313 0 225 0 0 0 chr3 172895265 172895290 -54629288 + (CA)n Simple_repeat Simple_repeat 2 26 0 675 307 69 11 chr3 172895295 172895572 -54629006 + L1ME LINE L1 203 495 -5575 352 268 0 0 chr3 172895697 172895768 -54628810 + LTR16A LTR ERVL 365 435 -15 1436 220 81 78 chr3 172896025 172896359 -54628219 - L1ME3 LINE L1 -1 6161 5830 243 0 0 0 chr3 172896359 172896386 -54628192 + (TA)n Simple_repeat Simple_repeat 1 27 0 1925 166 0 3 chr3 172896386 172896693 -54627885 - AluJo SINE Alu -6 306 1 1436 220 81 78 chr3 172896693 172896912 -54627666 - L1ME3 LINE L1 -331 5831 5605 24 0 0 0 chr3 172897004 172897028 -54627550 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 172898065 172898088 -54626490 + AT_rich Low_complexity Low_complexity 1 23 0 302 65 0 22 chr3 172898350 172898396 -54626182 + (TTCC)n Simple_repeat Simple_repeat 2 46 0 1960 150 0 7 chr3 172898483 172898783 -54625795 + AluSx SINE Alu 1 298 -14 289 352 138 42 chr3 172898850 172899228 -54625350 - L2 LINE L2 -337 2977 2564 34 55 0 0 chr3 172899767 172899822 -54624756 + AT_rich Low_complexity Low_complexity 1 55 0 231 114 0 0 chr3 172900076 172900120 -54624458 + (T)n Simple_repeat Simple_repeat 1 44 0 777 325 126 6 chr3 172900125 172900544 -54624034 + LTR33A LTR ERVL 71 523 0 25 51 0 0 chr3 172900948 172900987 -54623591 + AT_rich Low_complexity Low_complexity 1 39 0 199 224 13 118 chr3 172901065 172901141 -54623437 - MIR3 SINE MIR -54 154 87 21 0 0 0 chr3 172901324 172901345 -54623233 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 172901501 172901523 -54623055 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 172901907 172901928 -54622650 + AT_rich Low_complexity Low_complexity 1 21 0 2020 214 28 59 chr3 172902175 172902458 -54622120 + MLT1D LTR MaLR 8 298 -169 297 0 0 0 chr3 172902458 172902491 -54622087 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 2020 214 28 59 chr3 172902491 172902680 -54621898 + MLT1D LTR MaLR 298 450 -17 944 242 176 34 chr3 172902680 172903122 -54621456 + MLT1D LTR MaLR 1 505 0 2020 214 28 59 chr3 172903122 172903140 -54621438 + MLT1D LTR MaLR 450 467 0 576 240 34 14 chr3 172903404 172903550 -54621028 - MIR SINE MIR -21 241 93 181 250 21 21 chr3 172903920 172903968 -54620610 + MIR3 SINE MIR 155 202 -6 2437 50 0 0 chr3 172904172 172904498 -54620080 + AluY SINE Alu 1 326 0 684 286 95 12 chr3 172904538 172904779 -54619799 - MIR SINE MIR -1 261 1 371 279 64 3 chr3 172905024 172905170 -54619408 + MIR SINE MIR 45 197 -65 194 346 50 40 chr3 172905312 172905413 -54619165 - L2 LINE L2 -16 3256 3155 244 204 34 80 chr3 172905532 172905620 -54618958 - L2 LINE L2 -4 3309 3226 825 281 41 25 chr3 172906317 172906559 -54618019 - MIR SINE MIR -1 261 16 181 250 21 21 chr3 172906669 172906717 -54617861 - MIR3 SINE MIR -6 202 155 919 161 43 0 chr3 172907151 172907313 -54617265 + AluJo SINE Alu 123 291 -21 803 170 7 7 chr3 172907591 172907732 -54616846 - MER2 DNA MER2_type -204 141 1 198 300 0 29 chr3 172908666 172908736 -54615842 + MIR SINE MIR 48 115 -147 5257 205 2 19 chr3 172909861 172911026 -54613552 + L1P LINE L1 1147 2291 -3855 338 0 24 0 chr3 172911336 172911378 -54613200 + (TG)n Simple_repeat Simple_repeat 2 44 0 243 342 75 48 chr3 172911378 172911565 -54613013 - MLT1L LTR MaLR -78 537 346 276 228 133 109 chr3 172911616 172911827 -54612751 - MLT1L LTR MaLR -360 255 40 23 0 0 0 chr3 172912224 172912247 -54612331 + AT_rich Low_complexity Low_complexity 1 23 0 414 57 0 0 chr3 172912394 172912447 -54612131 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 201 74 0 0 chr3 172912625 172912652 -54611926 + (CTG)n Simple_repeat Simple_repeat 1 27 0 228 191 0 24 chr3 172914457 172914499 -54610079 - MLT1L LTR MaLR -226 389 349 258 231 148 9 chr3 172915064 172915172 -54609406 - MIR SINE MIR -112 150 28 619 319 50 13 chr3 172915376 172915614 -54608964 + MIR SINE MIR 2 248 -14 218 179 26 0 chr3 172915616 172915655 -54608923 + (CCA)n Simple_repeat Simple_repeat 1 40 0 263 326 48 0 chr3 172916154 172916266 -54608312 + MIR SINE MIR 30 146 -68 522 46 0 0 chr3 172917389 172917454 -54607124 + (CA)n Simple_repeat Simple_repeat 1 65 0 461 299 103 10 chr3 172917626 172917820 -54606758 + L2 LINE L2 3102 3313 0 181 295 16 49 chr3 172918077 172918138 -54606440 + L2 LINE L2 3214 3272 0 32 26 0 0 chr3 172918279 172918318 -54606260 + AT_rich Low_complexity Low_complexity 1 39 0 480 94 0 0 chr3 172918718 172918782 -54605796 + AluSg SINE Alu 33 96 -214 805 206 45 63 chr3 172919494 172919717 -54604861 - MER20 DNA MER1_type 0 219 1 361 322 132 24 chr3 172920730 172920935 -54603643 + MIR SINE MIR 11 237 -25 409 306 55 45 chr3 172921699 172921898 -54602680 - MIR SINE MIR -15 247 47 504 322 166 15 chr3 172922746 172923078 -54601500 + L3 LINE CR1 1069 1450 -127 187 290 87 0 chr3 172923128 172923197 -54601381 - MIR SINE MIR -76 132 58 220 217 22 0 chr3 172923307 172923353 -54601225 + L2 LINE L2 3224 3270 -2 1563 201 44 85 chr3 172924106 172924633 -54599945 + MLT1D LTR MaLR 1 505 0 1652 248 94 65 chr3 172924752 172925058 -54599520 - MER97b DNA MER1_type? -332 721 425 1981 149 0 7 chr3 172925058 172925354 -54599224 + AluSx SINE Alu 1 294 -18 1652 248 94 65 chr3 172925354 172925737 -54598841 - MER97b DNA MER1_type? -628 425 12 189 272 65 65 chr3 172926831 172926923 -54597655 - MIR3 SINE MIR -14 194 103 225 0 0 0 chr3 172927146 172927171 -54597407 + (T)n Simple_repeat Simple_repeat 1 25 0 374 229 0 0 chr3 172927324 172927394 -54597184 - MER5A DNA MER1_type -106 83 14 364 344 39 6 chr3 172928006 172928186 -54596392 - MER5A DNA MER1_type -2 187 2 240 281 16 16 chr3 172928195 172928259 -54596319 - MER5A DNA MER1_type -3 186 123 2201 181 71 8 chr3 172928998 172929479 -54595099 - L1MB8 LINE L1 -1 6177 5667 393 342 170 26 chr3 172929621 172930127 -54594451 + L2 LINE L2 2135 2713 -601 352 253 0 42 chr3 172931445 172931540 -54593038 - MER45C DNA AcHobo -740 213 123 8798 20 0 0 chr3 172931843 172933248 -54591330 - L1P2 LINE L1 -397 5758 4354 429 18 18 0 chr3 172933247 172933303 -54591275 + L1P2 LINE L1 4294 4350 -1796 * 686 235 37 0 chr3 172934820 172934982 -54589596 - MER69A DNA AcHobo -9 168 1 390 295 30 60 chr3 172935090 172935256 -54589322 - MER5B DNA MER1_type -17 161 1 338 287 138 12 chr3 172935330 172935497 -54589081 - MIR SINE MIR -39 223 36 320 318 19 9 chr3 172936028 172936135 -54588443 + MER5C DNA MER1_type 12 119 -205 7720 184 37 23 chr3 172936170 172937652 -54586926 + L1M1 LINE L1 14 1516 -6049 456 244 125 18 chr3 172937755 172937923 -54586655 - L1MC4 LINE L1 -920 7122 6937 4457 32 0 0 chr3 172939069 172939599 -54584979 - L1P LINE L1 -2131 4015 3486 301 275 199 0 chr3 172940189 172940320 -54584258 + MIR SINE MIR 106 262 0 226 358 12 12 chr3 172940355 172940436 -54584142 + MIR SINE MIR 20 100 -162 2019 101 17 7 chr3 172940438 172940725 -54583853 - AluSc SINE Alu -12 297 8 1440 210 3 16 chr3 172941983 172942288 -54582290 + AluJb SINE Alu 1 301 -11 184 359 0 0 chr3 172942461 172942525 -54582053 + L2 LINE L2 3245 3308 -5 555 250 62 36 chr3 172942535 172942727 -54581851 - MIR SINE MIR -1 261 65 634 224 179 6 chr3 172942836 172943015 -54581563 + MER63A DNA MER1_type 1 210 0 1614 139 23 132 chr3 172943584 172943971 -54580607 + MER7A DNA MER2_type 2 344 -2 23 0 0 0 chr3 172944003 172944026 -54580552 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr3 172944314 172944340 -54580238 + AT_rich Low_complexity Low_complexity 1 26 0 1133 241 40 15 chr3 172944522 172944846 -54579732 + L1ME3A LINE L1 5837 6168 -2 293 310 65 41 chr3 172944940 172945124 -54579454 - MIR SINE MIR -1 261 74 365 305 86 0 chr3 172945886 172946014 -54578564 - MIR SINE MIR -62 200 62 21 57 0 0 chr3 172947308 172947343 -54577235 + AT_rich Low_complexity Low_complexity 1 35 0 216 111 0 0 chr3 172948879 172948915 -54575663 + (A)n Simple_repeat Simple_repeat 1 36 0 22 35 0 0 chr3 172949315 172949344 -54575234 + AT_rich Low_complexity Low_complexity 1 29 0 332 341 36 14 chr3 172949599 172949737 -54574841 + MIR SINE MIR 7 147 -115 183 42 0 0 chr3 172951209 172951233 -54573345 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 669 332 37 12 chr3 172952320 172952561 -54572017 + MIR SINE MIR 6 252 -10 2125 125 3 0 chr3 172952749 172953045 -54571533 + AluSx SINE Alu 1 297 -15 210 189 0 19 chr3 172953393 172953446 -54571132 + A-rich Low_complexity Low_complexity 1 52 0 289 262 89 83 chr3 172953557 172953725 -54570853 + MLT1J LTR MaLR 232 400 -111 21 0 0 0 chr3 172954530 172954551 -54570027 + AT_rich Low_complexity Low_complexity 1 21 0 1873 156 14 0 chr3 172955738 172956027 -54568551 + AluSx SINE Alu 1 293 -19 21 36 0 0 chr3 172956301 172956329 -54568249 + AT_rich Low_complexity Low_complexity 1 28 0 182 114 0 29 chr3 172956489 172956524 -54568054 + (GAA)n Simple_repeat Simple_repeat 2 35 0 224 30 30 0 chr3 172957455 172957488 -54567090 + (GA)n Simple_repeat Simple_repeat 1 34 0 198 0 0 0 chr3 172957488 172957510 -54567068 + (TG)n Simple_repeat Simple_repeat 2 23 0 2233 107 3 3 chr3 172958681 172958979 -54565599 + AluSp SINE Alu 1 298 -15 398 324 87 23 chr3 172959778 172959997 -54564581 - MIR SINE MIR -13 249 17 2327 84 0 7 chr3 172960033 172960329 -54564249 + AluSg SINE Alu 1 294 -16 223 318 12 0 chr3 172960808 172960893 -54563685 - MIR SINE MIR -2 260 175 2714 3 0 7 chr3 172961143 172961443 -54563135 - AluYa5 SINE Alu -9 302 5 311 285 42 85 chr3 172961738 172961903 -54562675 - MIR SINE MIR -73 189 32 404 97 83 0 chr3 172962631 172962703 -54561875 + MADE1 DNA Mariner 3 80 0 25 0 0 0 chr3 172964550 172964575 -54560003 + AT_rich Low_complexity Low_complexity 1 25 0 249 309 24 24 chr3 172964670 172964754 -54559824 + L2 LINE L2 3223 3306 -7 343 305 28 68 chr3 172965938 172966115 -54558463 + MIR SINE MIR 37 206 -56 184 333 211 32 chr3 172966977 172967133 -54557445 + L2 LINE L2 3077 3260 -12 21 0 0 0 chr3 172967174 172967195 -54557383 + AT_rich Low_complexity Low_complexity 1 21 0 254 326 58 0 chr3 172967883 172967984 -54556594 + MIR SINE MIR 42 153 -77 23 33 0 0 chr3 172970597 172970627 -54553951 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 172971328 172971350 -54553228 + AT_rich Low_complexity Low_complexity 1 22 0 2152 98 3 11 chr3 172975693 172975978 -54548600 + AluSg SINE Alu 11 293 -17 1623 116 11 54 chr3 172975983 172976259 -54548319 + AluSg SINE Alu 1 264 -46 909 275 57 0 chr3 172978405 172978634 -54545944 + MIR SINE MIR 20 261 -1 24 32 0 0 chr3 172979004 172979035 -54545543 + AT_rich Low_complexity Low_complexity 1 31 0 2264 98 7 7 chr3 172979141 172979446 -54545132 - AluSc SINE Alu -4 305 1 21 0 0 0 chr3 172981594 172981615 -54542963 + AT_rich Low_complexity Low_complexity 1 21 0 1038 177 141 0 chr3 172982742 172982801 -54541777 - MER33 DNA MER1_type -2261 324 275 267 31 0 0 chr3 172982801 172982833 -54541745 + (GA)n Simple_repeat Simple_repeat 1 32 0 1038 177 141 0 chr3 172982833 172983056 -54541522 - MER33 DNA MER1_type -2310 275 2 187 274 197 71 chr3 172987376 172987659 -54536919 - L2 LINE L2 -7 3265 2921 660 175 33 0 chr3 172987659 172987779 -54536799 + FLAM_C SINE Alu 1 124 -9 187 274 197 71 chr3 172987779 172987875 -54536703 - L2 LINE L2 -351 2921 2838 360 59 0 0 chr3 172989448 172989499 -54535079 + (CA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr3 172989908 172989929 -54534649 + AT_rich Low_complexity Low_complexity 1 21 0 254 303 206 32 chr3 172990191 172990346 -54534232 - MIR3 SINE MIR -7 201 20 288 158 24 12 chr3 172990461 172990543 -54534035 + CT-rich Low_complexity Low_complexity 1 83 0 757 234 125 68 chr3 172990575 172990942 -54533636 - L2 LINE L2 -4 3309 2922 214 299 92 0 chr3 172990936 172991023 -54533555 - L2 LINE L2 -41 3231 3137 * 345 307 102 8 chr3 172992708 172992835 -54531743 - L2 LINE L2 -1 3271 3133 547 207 207 7 chr3 172993620 172993760 -54530818 + MER5B DNA MER1_type 1 168 -10 185 274 48 24 chr3 172994755 172994839 -54529739 - L2 LINE L2 -4 3268 3183 33 25 0 0 chr3 172995364 172995404 -54529174 + AT_rich Low_complexity Low_complexity 1 40 0 23 86 0 0 chr3 172996634 172996692 -54527886 + AT_rich Low_complexity Low_complexity 1 58 0 781 293 107 50 chr3 172998869 172999347 -54525231 + L2 LINE L2 2804 3308 -5 23 54 0 0 chr3 172999517 172999554 -54525024 + AT_rich Low_complexity Low_complexity 1 37 0 496 222 37 44 chr3 172999938 173000073 -54524505 + MIR SINE MIR 79 212 -50 226 254 0 0 chr3 173000115 173000170 -54524408 + (TTA)n Simple_repeat Simple_repeat 2 56 0 975 316 89 35 chr3 173000806 173001804 -54522774 - L2 LINE L2 -18 3295 2235 237 33 0 0 chr3 173002584 173002614 -54521964 + (GGAA)n Simple_repeat Simple_repeat 1 30 0 1042 233 135 88 chr3 173002630 173003246 -54521332 + L1MC4 LINE L1 6956 7622 -420 849 167 54 27 chr3 173003246 173003468 -54521110 + L1MA8 LINE L1 6056 6283 -8 1042 233 135 88 chr3 173003468 173003678 -54520900 + L1MC4 LINE L1 7622 7821 -221 * 1324 32 0 0 chr3 173003671 173003828 -54520750 - L1PA3 LINE L1 -2273 3873 3717 13114 21 0 0 chr3 173003828 173006121 -54518457 + L1PA3 LINE L1 3856 6148 -7 22 35 0 0 chr3 173006121 173006150 -54518428 + AT_rich Low_complexity Low_complexity 1 29 0 302 212 110 106 chr3 173006150 173006386 -54518192 + L1MC4 LINE L1 7803 8039 -3 21 95 0 0 chr3 173006954 173007017 -54517561 + AT_rich Low_complexity Low_complexity 1 63 0 46 62 0 0 chr3 173008149 173008230 -54516348 + AT_rich Low_complexity Low_complexity 1 81 0 198 0 0 0 chr3 173008371 173008393 -54516185 + (CAA)n Simple_repeat Simple_repeat 3 24 0 887 210 6 0 chr3 173008639 173008806 -54515772 - AluJb SINE Alu -8 304 137 2020 113 3 3 chr3 173010638 173010945 -54513633 + AluSx SINE Alu 1 307 0 2101 108 0 10 chr3 173011775 173012071 -54512507 + AluSx SINE Alu 3 295 -17 466 309 148 61 chr3 173012516 173012687 -54511891 + L2 LINE L2 1634 1789 -1525 3358 136 53 0 chr3 173012687 173013254 -54511324 - L1MB3 LINE L1 -10 6173 5577 466 309 148 61 chr3 173013254 173013668 -54510910 + L2 LINE L2 1789 2270 -1044 252 259 74 19 chr3 173013770 173013878 -54510700 + MIR SINE MIR 75 188 -74 413 320 100 29 chr3 173014271 173014580 -54509998 - L1MC/D LINE L1 -2144 5664 5334 703 304 23 0 chr3 173014781 173015001 -54509577 - L1MC4 LINE L1 -1080 6962 6738 23 0 0 0 chr3 173015494 173015517 -54509061 + AT_rich Low_complexity Low_complexity 1 23 0 46 74 0 0 chr3 173015670 173015765 -54508813 + AT_rich Low_complexity Low_complexity 1 95 0 331 265 49 0 chr3 173015822 173015924 -54508654 + MIR SINE MIR 110 216 -46 224 274 129 0 chr3 173016142 173016204 -54508374 - L2 LINE L2 -2 3270 3201 545 289 116 41 chr3 173016210 173016528 -54508050 + LTR33 LTR ERVL 120 461 -60 604 200 0 0 chr3 173016595 173016700 -54507878 + FLAM_A SINE Alu 1 105 -37 1621 100 5 0 chr3 173017119 173017339 -54507239 - AluSq SINE Alu -5 308 88 1244 316 73 31 chr3 173017400 173017947 -54506631 + MLT1K LTR MaLR 3 572 -16 558 214 63 0 chr3 173018042 173018201 -54506377 - Charlie5 DNA MER1_type -28 2584 2416 263 82 0 82 chr3 173018205 173018266 -54506312 - Charlie5 DNA MER1_type -2482 130 75 737 174 132 7 chr3 173018267 173018377 -54506201 - AluJb SINE Alu -66 246 112 219 69 0 0 chr3 173018377 173018406 -54506172 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 737 174 132 7 chr3 173018406 173018439 -54506139 - AluJb SINE Alu -199 113 85 21 36 0 0 chr3 173019132 173019160 -54505418 + AT_rich Low_complexity Low_complexity 1 28 0 274 150 0 17 chr3 173020251 173020311 -54504267 + L1MC4 LINE L1 6644 6702 -1340 360 275 46 8 chr3 173020336 173020467 -54504111 - L1ME4a LINE L1 -12 6109 5974 2019 150 10 0 chr3 173020502 173020816 -54503762 + MER7A DNA MER2_type 31 345 -1 2908 101 14 0 chr3 173022256 173022681 -54501897 - L1MA1 LINE L1 -7 6295 5865 432 314 42 29 chr3 173022708 173023017 -54501561 + L1MC4 LINE L1 7059 7371 -671 * 3595 114 14 72 chr3 173023013 173023507 -54501071 - L1MA1 LINE L1 -473 5829 5418 2758 52 35 3 chr3 173023507 173023874 -54500704 - L1PA7 LINE L1 0 6154 5776 3595 114 14 72 chr3 173023874 173024380 -54500198 - L1MA1 LINE L1 -884 5418 4885 24 67 0 0 chr3 173024453 173024498 -54500080 + AT_rich Low_complexity Low_complexity 1 45 0 2010 225 64 48 chr3 173024501 173025111 -54499467 - MLT1E3 LTR MaLR -4 620 1 364 292 65 11 chr3 173025126 173025311 -54499267 + L1MC5 LINE L1 7719 7913 -48 1409 280 72 50 chr3 173025758 173026702 -54497876 + L1MC4 LINE L1 7078 8042 0 265 264 108 54 chr3 173026704 173026852 -54497726 + MIR3 SINE MIR 97 252 -10 22 56 0 0 chr3 173027019 173027055 -54497523 + AT_rich Low_complexity Low_complexity 1 36 0 244 181 48 29 chr3 173027107 173027212 -54497366 + (TTATA)n Simple_repeat Simple_repeat 2 108 0 21 57 0 0 chr3 173027638 173027673 -54496905 + AT_rich Low_complexity Low_complexity 1 35 0 2054 119 7 0 chr3 173027721 173028007 -54496571 - AluSx SINE Alu -24 288 1 22 35 0 0 chr3 173028231 173028260 -54496318 + AT_rich Low_complexity Low_complexity 1 29 0 853 86 0 0 chr3 173028466 173028583 -54495995 + MLT2B2 LTR ERVL 1 117 -398 354 192 0 0 chr3 173028612 173028685 -54495893 + L1PB4 LINE L1 6077 6149 -7 180 0 0 0 chr3 173028689 173028709 -54495869 + (TAAA)n Simple_repeat Simple_repeat 2 21 0 279 0 0 0 chr3 173028837 173028868 -54495710 + (CA)n Simple_repeat Simple_repeat 2 32 0 1225 170 0 28 chr3 173029764 173029976 -54494602 + AluJo SINE Alu 85 290 -22 24 53 0 0 chr3 173030421 173030459 -54494119 + AT_rich Low_complexity Low_complexity 1 38 0 1980 295 117 42 chr3 173030821 173030933 -54493645 + L1MEc LINE L1 32 134 -6262 3398 143 33 18 chr3 173030933 173031167 -54493411 + L1PA15 LINE L1 5553 5782 -383 2451 57 0 10 chr3 173031167 173031481 -54493097 + AluY SINE Alu 1 311 0 3398 143 33 18 chr3 173031481 173031849 -54492729 + L1PA15 LINE L1 5782 6164 -1 1980 295 117 42 chr3 173031849 173033039 -54491539 + L1MEc LINE L1 134 1432 -4964 181 250 21 0 chr3 173033350 173033398 -54491180 - L2 LINE L2 -3 3310 3262 206 298 0 0 chr3 173033670 173033727 -54490851 - MIR3 SINE MIR -1 207 151 728 169 158 16 chr3 173034440 173034623 -54489955 - MER3 DNA MER1_type 0 209 1 802 231 67 82 chr3 173035422 173035764 -54488814 - MER2 DNA MER2_type -7 338 2 5517 115 190 91 chr3 173036172 173037599 -54486979 - pTR5 LTR ERV1 -143 2295 276 595 137 0 0 chr3 173037600 173037695 -54486883 - AluSq/x SINE Alu -203 110 16 212 54 54 0 chr3 173038379 173038416 -54486162 + A-rich Low_complexity Low_complexity 4 42 0 1250 197 12 71 chr3 173039179 173039504 -54485074 - AluJo SINE Alu -4 308 3 2127 117 10 0 chr3 173039741 173040041 -54484537 - AluSp SINE Alu -10 303 1 355 324 28 14 chr3 173040406 173040551 -54484027 - MIR SINE MIR -115 147 1 398 317 0 66 chr3 173042037 173042204 -54482374 - MIR SINE MIR -28 234 79 2125 157 25 86 chr3 173043653 173044085 -54480493 - MLT2D LTR ERVL -8 406 1 239 265 15 0 chr3 173044402 173044470 -54480108 + MLT1J LTR MaLR 231 299 -212 195 279 133 85 chr3 173044810 173044975 -54479603 + L3b LINE CR1 1278 1450 -133 1672 163 67 28 chr3 173045937 173046298 -54478280 - THE1C LTR MaLR 0 375 1 1969 138 7 0 chr3 173046367 173046656 -54477922 - AluSc SINE Alu -18 291 1 239 348 53 61 chr3 173047407 173047654 -54476924 - L2 LINE L2 -363 2951 2707 331 214 66 24 chr3 173048340 173048486 -54476092 + Charlie8 DNA MER1_type 2 170 -2247 309 262 0 10 chr3 173052907 173053010 -54471568 + L1ME4a LINE L1 5780 5881 -240 324 0 0 0 chr3 173053036 173053072 -54471506 + (CA)n Simple_repeat Simple_repeat 1 36 0 677 292 35 13 chr3 173054041 173054267 -54470311 + MIR SINE MIR 26 256 -6 467 241 139 7 chr3 173054842 173054979 -54469599 + MER5A DNA MER1_type 34 188 -1 1559 146 27 23 chr3 173056437 173056874 -54467704 + LTR54 LTR ERV1 1 510 0 29 0 0 0 chr3 173057471 173057500 -54467078 + AT_rich Low_complexity Low_complexity 1 29 0 2257 87 3 0 chr3 173058356 173058654 -54465924 - AluY SINE Alu -12 299 1 1298 167 68 68 chr3 173059804 173060097 -54464481 - AluJo SINE Alu -19 293 1 21 0 0 0 chr3 173060841 173060862 -54463716 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 173062233 173062261 -54462317 + AT_rich Low_complexity Low_complexity 1 28 0 232 283 19 19 chr3 173062344 173062450 -54462128 + GA-rich Low_complexity Low_complexity 5 110 0 2058 131 6 26 chr3 173062474 173062787 -54461791 - AluSx SINE Alu -5 307 1 21 0 0 0 chr3 173063637 173063658 -54460920 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 173063756 173063777 -54460801 + AT_rich Low_complexity Low_complexity 1 21 0 346 291 29 19 chr3 173064031 173064134 -54460444 + L2 LINE L2 3199 3302 -11 242 247 123 0 chr3 173064197 173064278 -54460300 + MER103 DNA DNA 8 98 -68 189 94 0 0 chr3 173065073 173065105 -54459473 + (CAG)n Simple_repeat Simple_repeat 2 33 0 715 274 11 11 chr3 173066026 173066205 -54458373 - MIR SINE MIR 0 262 84 625 263 73 44 chr3 173066414 173066619 -54457959 - MIR SINE MIR -50 212 2 414 0 0 0 chr3 173067382 173067428 -54457150 + (CA)n Simple_repeat Simple_repeat 1 46 0 1969 106 29 7 chr3 173068129 173068404 -54456174 + AluSq SINE Alu 1 281 -32 225 0 0 0 chr3 173068404 173068429 -54456149 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 264 59 0 0 chr3 173068901 173068935 -54455643 + (TG)n Simple_repeat Simple_repeat 2 35 0 203 239 15 0 chr3 173068984 173069051 -54455527 + GA-rich Low_complexity Low_complexity 1 68 0 1699 103 130 40 chr3 173069200 173069501 -54455077 - MER44D DNA MER2_type -11 598 1 830 226 75 0 chr3 173069727 173069926 -54454652 + AluJo SINE Alu 7 220 -92 369 67 76 9 chr3 173070362 173070467 -54454111 + (TA)n Simple_repeat Simple_repeat 1 112 0 1172 184 8 83 chr3 173070467 173070733 -54453845 - AluJb SINE Alu -24 288 43 21 0 0 0 chr3 173072138 173072159 -54452419 + AT_rich Low_complexity Low_complexity 1 21 0 186 167 0 0 chr3 173072425 173072461 -54452117 + (TATG)n Simple_repeat Simple_repeat 1 36 0 2232 95 10 7 chr3 173072838 173073143 -54451435 + AluSx SINE Alu 5 310 -2 239 341 22 0 chr3 173073256 173073347 -54451231 - L2 LINE L2 -255 3017 2925 28 48 0 0 chr3 173073545 173073587 -54450991 + AT_rich Low_complexity Low_complexity 1 42 0 900 143 0 0 chr3 173073599 173073725 -54450853 - AluJb SINE Alu -186 126 1 673 250 28 28 chr3 173073795 173073971 -54450607 + MER45A DNA AcHobo 2 177 -1 2313 62 0 56 chr3 173074172 173074492 -54450086 - AluY SINE Alu -9 302 1 912 128 78 0 chr3 173075865 173076033 -54448545 - AluSg/x SINE Alu 0 310 132 258 261 29 0 chr3 173076799 173076868 -54447710 + (CATATA)n Simple_repeat Simple_repeat 1 71 0 240 133 0 0 chr3 173076870 173076915 -54447663 + LTR66 LTR ERVL 394 438 -172 1032 143 0 0 chr3 173076916 173077145 -54447433 + (TA)n Simple_repeat Simple_repeat 1 229 0 186 103 0 0 chr3 173077473 173077502 -54447076 + (T)n Simple_repeat Simple_repeat 1 29 0 537 317 120 10 chr3 173077651 173077960 -54446618 + MLT1L LTR MaLR 130 472 -143 11928 132 27 3 chr3 173078279 173080154 -54444424 - Tigger1 DNA MER2_type 0 2418 500 2141 96 19 44 chr3 173080155 173080520 -54444058 + L1MA4A LINE L1 5943 6298 -5 1640 179 0 47 chr3 173080842 173081161 -54443417 - AluJb SINE Alu -6 306 3 180 302 129 35 chr3 173081525 173081641 -54442937 - MIR SINE MIR -50 212 86 365 292 31 31 chr3 173081846 173081962 -54442616 + MIR SINE MIR 28 146 -116 1616 141 8 0 chr3 173081962 173082210 -54442368 + AluSx SINE Alu 60 309 -3 365 292 31 31 chr3 173082210 173082223 -54442355 + MIR SINE MIR 145 157 -105 383 264 7 0 chr3 173083121 173083261 -54441317 + (CA)n Simple_repeat Simple_repeat 2 142 0 702 287 48 22 chr3 173086551 173086819 -54437759 + MLT1J LTR MaLR 237 511 0 374 237 123 18 chr3 173087911 173088025 -54436553 - MER94 DNA DNA 0 134 9 1689 25 0 0 chr3 173088105 173088305 -54436273 - L1PA2 LINE L1 -1 6154 5955 1068 310 113 14 chr3 173088972 173089414 -54435164 - LTR16C LTR ERVL 0 491 6 848 318 125 20 chr3 173089566 173090007 -54434571 - MLT1K LTR MaLR -69 519 33 387 0 0 0 chr3 173090018 173090061 -54434517 + (CA)n Simple_repeat Simple_repeat 2 44 0 343 360 160 0 chr3 173090664 173090889 -54433689 + MIR SINE MIR 2 262 0 1086 266 64 35 chr3 173091421 173091767 -54432811 + MLT1A2 LTR MaLR 18 373 -1 196 266 35 88 chr3 173091965 173092078 -54432500 + MIR3 SINE MIR 102 208 0 22 35 0 0 chr3 173092381 173092410 -54432168 + AT_rich Low_complexity Low_complexity 1 29 0 335 240 0 0 chr3 173093799 173093874 -54430704 - MER116 DNA Mariner 0 80 6 954 348 126 18 chr3 173094244 173094972 -54429606 - L3 LINE CR1 -363 1214 408 15013 148 29 22 chr3 173095151 173096671 -54427907 - Tigger2 DNA MER2_type 0 2718 1171 1997 158 0 0 chr3 173096671 173096969 -54427609 - AluSx SINE Alu -14 298 1 15013 148 29 22 chr3 173096969 173098148 -54426430 - Tigger2 DNA MER2_type -1547 1171 1 1107 208 23 0 chr3 173098159 173098375 -54426203 - MER58A DNA MER1_type -3 221 1 1623 190 22 30 chr3 173098606 173098974 -54425604 + MLT1A1 LTR MaLR 1 365 0 270 0 0 0 chr3 173099628 173099658 -54424920 + (CA)n Simple_repeat Simple_repeat 2 31 0 9610 35 5 1 chr3 173099847 173101781 -54422797 - L1PA4 LINE L1 -3 6152 4210 4559 49 0 0 chr3 173101781 173102348 -54422230 + L1P LINE L1 1520 2086 -4060 6328 209 153 53 chr3 173102348 173103056 -54421522 - L1MC3 LINE L1 -30 7755 7119 183 100 0 0 chr3 173103056 173103086 -54421492 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 6328 209 153 53 chr3 173103086 173103298 -54421280 - L1MC3 LINE L1 -666 7119 6929 553 29 0 0 chr3 173103298 173103366 -54421212 + AluY SINE Alu 224 291 -18 6328 209 153 53 chr3 173103366 173104488 -54420090 - L1MC3 LINE L1 -856 6929 5435 1306 112 0 0 chr3 173104488 173104666 -54419912 - AluY SINE Alu -2 309 132 559 196 83 12 chr3 173104666 173104834 -54419744 - L1MC3 LINE L1 -962 5184 5005 30 0 0 0 chr3 173104854 173104884 -54419694 + AT_rich Low_complexity Low_complexity 1 30 0 1276 166 0 48 chr3 173104897 173105126 -54419452 - AluJo SINE Alu -94 218 1 586 272 65 32 chr3 173105127 173105416 -54419162 - L1MC/D LINE L1 -543 5578 5258 385 279 70 76 chr3 173105420 173105736 -54418842 - L1MC/D LINE L1 -893 5253 4940 2076 119 7 0 chr3 173105984 173106277 -54418301 - AluSx SINE Alu -13 299 5 33 0 0 0 chr3 173107334 173107367 -54417211 + AT_rich Low_complexity Low_complexity 1 33 0 355 287 85 0 chr3 173108009 173108138 -54416440 + MIR SINE MIR 87 226 -36 265 188 0 0 chr3 173108484 173108532 -54416046 + MIR SINE MIR 107 154 -108 29 28 0 0 chr3 173108618 173108654 -54415924 + AT_rich Low_complexity Low_complexity 1 36 0 487 238 62 82 chr3 173110536 173110780 -54413798 + MER112 DNA MER1_type 12 250 -10 659 107 27 33 chr3 173111164 173111314 -54413264 + CT-rich Low_complexity Low_complexity 3 151 0 36 0 0 0 chr3 173114218 173114254 -54410324 + AT_rich Low_complexity Low_complexity 1 36 0 1926 126 0 0 chr3 173114645 173114916 -54409662 - AluSg SINE Alu -9 301 31 4915 116 68 62 chr3 173114919 173116468 -54408110 - pTR5 LTR ERV1 0 2438 750 234 122 122 0 chr3 173116468 173116509 -54408069 - AluSg SINE Alu -254 46 1 198 71 0 0 chr3 173116529 173116557 -54408021 + (TTTTTG)n Simple_repeat Simple_repeat 3 30 0 418 99 8 19 chr3 173117688 173117818 -54406760 + MER53 DNA DNA 15 187 -2 224 345 12 0 chr3 173117820 173117904 -54406674 + L2 LINE L2 3229 3313 0 333 276 20 20 chr3 173118936 173119034 -54405544 + MLT1H1 LTR MaLR 1 98 -457 368 253 84 86 chr3 173119034 173119405 -54405173 - L1M4 LINE L1 -2523 3623 3254 185 125 75 0 chr3 173119419 173119459 -54405119 + CT-rich Low_complexity Low_complexity 5 47 0 539 238 34 34 chr3 173119758 173119905 -54404673 + MER77 LTR ERV1 66 212 -393 * 1025 286 61 50 chr3 173119897 173120338 -54404240 + MER77 LTR ERV1 154 599 -6 1329 298 12 21 chr3 173120428 173120848 -54403730 + MER77-int LTR ERV1 1 416 -3775 1202 296 16 62 chr3 173121009 173121060 -54403518 + MER77-int LTR ERV1 1219 1271 -2920 2399 38 3 0 chr3 173121060 173121352 -54403226 - L1PA7 LINE L1 0 6154 5862 1202 296 16 62 chr3 173121352 173121365 -54403213 + MER77-int LTR ERV1 1271 1283 -2908 2021 138 0 0 chr3 173121365 173121673 -54402905 + AluSx SINE Alu 1 308 0 1202 296 16 62 chr3 173121673 173122045 -54402533 + MER77-int LTR ERV1 1283 1637 -2554 1836 176 6 10 chr3 173122161 173122474 -54402104 + AluSx SINE Alu 1 312 0 366 220 42 34 chr3 173122475 173122593 -54401985 + L1M4 LINE L1 5179 5297 -849 2052 142 0 0 chr3 173122608 173122910 -54401668 + AluSx SINE Alu 1 302 -10 8350 240 65 49 chr3 173122915 173125352 -54399226 + MER77-int LTR ERV1 1660 4136 -55 486 0 0 0 chr3 173125859 173125913 -54398665 + (TG)n Simple_repeat Simple_repeat 2 55 0 1965 132 3 14 chr3 173125913 173126200 -54398378 - AluSx SINE Alu -28 284 1 287 247 39 0 chr3 173126239 173126316 -54398262 - MER116 DNA Mariner 0 80 1 180 0 0 0 chr3 173126324 173126344 -54398234 + (TTG)n Simple_repeat Simple_repeat 2 21 0 22 56 0 0 chr3 173126364 173126400 -54398178 + AT_rich Low_complexity Low_complexity 1 36 0 1567 192 14 11 chr3 173127824 173128105 -54396473 - AluJo SINE Alu -30 282 1 643 216 22 43 chr3 173128493 173128678 -54395900 - MIR SINE MIR -1 261 81 862 305 79 16 chr3 173128836 173129203 -54395375 + LTR16C LTR ERVL 102 491 0 261 310 23 52 chr3 173129327 173129501 -54395077 - MLT1J LTR MaLR -16 495 327 233 343 14 0 chr3 173129552 173129625 -54394953 - MLT1J2 LTR MaLR -311 139 66 292 329 53 7 chr3 173129735 173129887 -54394691 + L2 LINE L2 3155 3313 0 373 203 0 0 chr3 173130296 173130365 -54394213 + AluJ/FRAM SINE Alu 231 299 -3 225 65 0 0 chr3 173130366 173130397 -54394181 + (CA)n Simple_repeat Simple_repeat 1 31 0 1102 223 100 45 chr3 173130397 173130796 -54393782 - MLT1D LTR MaLR 0 505 85 1781 125 44 80 chr3 173130796 173130852 -54393726 - L1PB4 LINE L1 -1 6155 6099 2249 108 0 7 chr3 173130852 173131157 -54393421 - AluSq SINE Alu -10 303 1 1781 125 44 80 chr3 173131157 173131461 -54393117 - L1PB4 LINE L1 -57 6099 5808 867 177 33 133 chr3 173131536 173131807 -54392771 - MLT1D-int LTR MaLR -15 1356 1113 2435 61 0 16 chr3 173132564 173132875 -54391703 + AluY SINE Alu 1 306 -5 249 294 0 0 chr3 173133675 173133743 -54390835 - MER94 DNA DNA -5 129 62 334 300 58 16 chr3 173133988 173134178 -54390400 - L1MC4 LINE L1 -143 7899 7702 851 186 186 7 chr3 173134202 173134476 -54390102 - L1MC4 LINE L1 -295 7747 7425 2559 228 45 11 chr3 173134488 173135151 -54389427 - L1ME1 LINE L1 -223 5943 5258 256 203 141 0 chr3 173135247 173135311 -54389267 + L1PB4 LINE L1 6079 6151 -5 229 216 0 20 chr3 173135563 173135614 -54388964 + GA-rich Low_complexity Low_complexity 1 50 0 2185 105 3 7 chr3 173136085 173136379 -54388199 + AluSg SINE Alu 1 293 -17 3542 140 4 4 chr3 173137297 173137860 -54386718 - L1PB3 LINE L1 -6 6148 5586 1893 159 3 28 chr3 173138217 173138537 -54386041 - AluSx SINE Alu 0 312 1 298 295 91 20 chr3 173138625 173138774 -54385804 - MIR SINE MIR -37 171 32 2495 68 0 3 chr3 173138842 173139150 -54385428 - AluY SINE Alu -4 307 1 2044 224 47 0 chr3 173139278 173139764 -54384814 + L1P LINE L1 4032 4540 -1606 328 88 18 0 chr3 173139764 173139821 -54384757 + L1PA16 LINE L1 6108 6165 -1 231 224 15 15 chr3 173139890 173139957 -54384621 + GA-rich Low_complexity Low_complexity 1 67 0 563 239 10 48 chr3 173140232 173140441 -54384137 - L1MC5 LINE L1 -49 7912 7712 373 335 99 6 chr3 173140508 173140690 -54383888 - MIR SINE MIR -49 213 15 270 362 47 47 chr3 173141130 173141384 -54383194 - L2 LINE L2 -556 2758 2505 258 317 54 62 chr3 173141454 173141694 -54382884 - L2 LINE L2 -1007 2307 2070 219 268 0 0 chr3 173142197 173142253 -54382325 + L2 LINE L2 3216 3271 -1 692 202 0 0 chr3 173142903 173143012 -54381566 - FLAM_A SINE Alu -33 109 1 2133 115 0 3 chr3 173143442 173143737 -54380841 - AluSq SINE Alu -15 298 5 183 275 27 154 chr3 173143765 173143914 -54380664 - L2 LINE L2 -6 3266 3137 2481 55 0 0 chr3 173143926 173144218 -54380360 - AluY SINE Alu -10 301 10 226 351 79 6 chr3 173144322 173144487 -54380091 - L2 LINE L2 -227 3045 2869 35 24 0 0 chr3 173145833 173145875 -54378703 + AT_rich Low_complexity Low_complexity 1 42 0 750 295 10 0 chr3 173146150 173146350 -54378228 + L1ME1 LINE L1 5960 6161 -5 398 265 116 14 chr3 173146419 173146566 -54378012 + MIR SINE MIR 47 208 -54 217 368 123 5 chr3 173147678 173147882 -54376696 + MIR SINE MIR 11 238 -24 2231 93 14 0 chr3 173148507 173148798 -54375780 - AluSq SINE Alu -18 295 1 1613 183 13 37 chr3 173149538 173149838 -54374740 - AluJo SINE Alu -19 293 1 198 339 24 24 chr3 173150000 173150127 -54374451 + L2 LINE L2 2632 2758 -556 1551 170 7 42 chr3 173150155 173150444 -54374134 + AluJb SINE Alu 1 279 -33 239 0 32 0 chr3 173150444 173150475 -54374103 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 12405 80 8 2 chr3 173150508 173152980 -54371598 + L1PA7 LINE L1 3668 6152 -2 2613 52 0 0 chr3 173153233 173153538 -54371040 + AluY SINE Alu 2 306 -5 443 212 0 12 chr3 173153753 173153838 -54370740 - ORSL DNA AcHobo -1 274 191 624 264 100 48 chr3 173153884 173154134 -54370444 - L2 LINE L2 0 3313 3051 25 65 0 0 chr3 173154332 173154378 -54370200 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr3 173154667 173154691 -54369887 + AT_rich Low_complexity Low_complexity 1 24 0 2491 148 54 0 chr3 173155098 173155504 -54369074 + MSTC LTR MaLR 1 428 0 1941 249 74 20 chr3 173156700 173157352 -54367226 - L1MC4 LINE L1 -145 7897 7211 1619 264 50 14 chr3 173157325 173157692 -54366886 - L1MC4a LINE L1 -813 6995 6643 * 245 51 26 0 chr3 173157692 173157731 -54366847 + (CA)n Simple_repeat Simple_repeat 2 41 0 1619 264 50 14 chr3 173157731 173157748 -54366830 - L1MC4a LINE L1 -1165 6643 6628 449 49 49 0 chr3 173157748 173157829 -54366749 + (TCTA)n Simple_repeat Simple_repeat 1 85 0 1619 264 50 14 chr3 173157829 173157961 -54366617 - L1MC4a LINE L1 -1180 6628 6459 21 0 0 0 chr3 173158264 173158285 -54366293 + AT_rich Low_complexity Low_complexity 1 21 0 687 325 100 12 chr3 173158380 173158709 -54365869 + L2 LINE L2 2941 3298 -15 38 81 0 0 chr3 173158941 173159028 -54365550 + AT_rich Low_complexity Low_complexity 1 87 0 366 290 56 74 chr3 173159148 173159379 -54365199 - MLT1K LTR MaLR -6 582 356 250 224 52 0 chr3 173159386 173159444 -54365134 - MLT1H LTR MaLR -446 103 43 312 333 22 54 chr3 173159503 173159725 -54364853 - MLT1K LTR MaLR -258 330 116 460 379 13 18 chr3 173160313 173160540 -54364038 + MIR SINE MIR 12 237 -25 1034 279 102 60 chr3 173160877 173161444 -54363134 + MLT1G1 LTR MaLR 3 593 -2 21 0 0 0 chr3 173162608 173162629 -54361949 + AT_rich Low_complexity Low_complexity 1 21 0 213 183 17 33 chr3 173163597 173163657 -54360921 + GA-rich Low_complexity Low_complexity 3 61 0 189 107 0 0 chr3 173163846 173163874 -54360704 + (TTTTC)n Simple_repeat Simple_repeat 4 31 0 2576 58 0 0 chr3 173163876 173164186 -54360392 - AluY SINE Alu -1 310 1 2047 100 0 10 chr3 173164580 173164870 -54359708 + AluSq SINE Alu 12 298 -15 680 202 0 0 chr3 173165300 173165409 -54359169 + FLAM_A SINE Alu 1 109 -33 220 268 0 0 chr3 173166060 173166116 -54358462 - L2 LINE L2 -1 3271 3216 277 362 47 47 chr3 173166969 173167223 -54357355 + L2 LINE L2 2505 2758 -556 405 330 99 6 chr3 173167663 173167845 -54356733 + MIR SINE MIR 15 213 -49 578 239 10 48 chr3 173167912 173168121 -54356457 + L1MC5 LINE L1 7712 7912 -49 231 224 15 15 chr3 173168396 173168463 -54356115 + CT-rich Low_complexity Low_complexity 1 67 0 329 88 18 0 chr3 173168532 173168589 -54355989 - L1PA16 LINE L1 -1 6165 6108 2091 222 47 0 chr3 173168589 173169075 -54355503 - L1P LINE L1 -1606 4540 4032 2460 68 0 3 chr3 173169203 173169511 -54355067 + AluY SINE Alu 1 307 -4 299 295 91 20 chr3 173169579 173169728 -54354850 + MIR SINE MIR 32 190 -37 1878 155 3 29 chr3 173169815 173170131 -54354447 + AluSx SINE Alu 1 308 -4 182 322 11 46 chr3 173170158 173170245 -54354333 - MIR SINE MIR -111 151 68 3477 139 4 4 chr3 173170500 173171052 -54353526 + L1PB3 LINE L1 5597 6148 -6 25 51 0 0 chr3 173171091 173171130 -54353448 + AT_rich Low_complexity Low_complexity 1 39 0 2369 60 0 0 chr3 173171970 173172254 -54352324 - AluY SINE Alu -18 293 10 225 351 79 6 chr3 173172358 173172523 -54352055 - L2 LINE L2 -227 3045 2869 35 24 0 0 chr3 173173869 173173911 -54350667 + AT_rich Low_complexity Low_complexity 1 42 0 754 295 10 0 chr3 173174186 173174386 -54350192 + L1ME1 LINE L1 5960 6161 -5 395 265 116 14 chr3 173174455 173174602 -54349976 + MIR SINE MIR 47 208 -54 220 373 123 5 chr3 173175714 173175918 -54348660 + MIR SINE MIR 11 238 -24 2213 92 14 0 chr3 173176543 173176836 -54347742 - AluSq SINE Alu -16 297 1 1568 187 13 37 chr3 173177576 173177876 -54346702 - AluJo SINE Alu -19 293 1 197 339 24 24 chr3 173178038 173178165 -54346413 + L2 LINE L2 2632 2758 -556 1521 170 7 42 chr3 173178193 173178482 -54346096 + AluJb SINE Alu 1 279 -33 239 0 32 0 chr3 173178482 173178513 -54346065 + (CAAA)n Simple_repeat Simple_repeat 1 32 0 12378 80 8 2 chr3 173178546 173181018 -54343560 + L1PA7 LINE L1 3668 6152 -2 2502 57 0 0 chr3 173181271 173181571 -54343007 + AluY SINE Alu 2 301 -10 446 212 0 12 chr3 173181786 173181871 -54342707 - ORSL DNA AcHobo -1 274 191 633 252 58 39 chr3 173181917 173182123 -54342455 - L2 LINE L2 0 3313 3104 25 65 0 0 chr3 173182365 173182411 -54342167 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr3 173182700 173182724 -54341854 + AT_rich Low_complexity Low_complexity 1 24 0 2475 148 54 0 chr3 173183131 173183537 -54341041 + MSTC LTR MaLR 1 428 0 1994 252 61 20 chr3 173184733 173185725 -54338853 - L1MC4 LINE L1 -145 7897 6948 245 51 26 0 chr3 173185725 173185764 -54338814 + (CA)n Simple_repeat Simple_repeat 2 41 0 1994 252 61 20 chr3 173185764 173185781 -54338797 - L1MC4 LINE L1 -1094 6948 6933 485 47 47 0 chr3 173185781 173185866 -54338712 + (TCTA)n Simple_repeat Simple_repeat 1 89 0 1994 252 61 20 chr3 173185866 173185998 -54338580 - L1MC4 LINE L1 -1109 6933 6459 21 0 0 0 chr3 173186301 173186322 -54338256 + AT_rich Low_complexity Low_complexity 1 21 0 687 325 100 12 chr3 173186417 173186746 -54337832 + L2 LINE L2 2941 3298 -15 38 81 0 0 chr3 173186978 173187065 -54337513 + AT_rich Low_complexity Low_complexity 1 87 0 345 294 56 74 chr3 173187185 173187416 -54337162 - MLT1K LTR MaLR -6 582 356 250 224 52 0 chr3 173187423 173187481 -54337097 - MLT1H LTR MaLR -446 103 43 312 333 22 54 chr3 173187540 173187762 -54336816 - MLT1K LTR MaLR -258 330 116 460 379 13 18 chr3 173188350 173188577 -54336001 + MIR SINE MIR 12 237 -25 1034 279 102 60 chr3 173188914 173189481 -54335097 + MLT1G1 LTR MaLR 3 593 -2 189 0 0 0 chr3 173190205 173190226 -54334352 + (A)n Simple_repeat Simple_repeat 1 21 0 21 0 0 0 chr3 173190648 173190669 -54333909 + AT_rich Low_complexity Low_complexity 1 21 0 213 183 17 33 chr3 173191637 173191697 -54332881 + GA-rich Low_complexity Low_complexity 3 61 0 2474 71 0 0 chr3 173191887 173192230 -54332348 - AluY SINE Alu 0 343 1 213 221 29 19 chr3 173193237 173193341 -54331237 + CT-rich Low_complexity Low_complexity 3 107 0 183 162 0 0 chr3 173193735 173193772 -54330806 + GA-rich Low_complexity Low_complexity 2 38 0 2098 188 39 10 chr3 173193936 173194350 -54330228 - MSTB LTR MaLR 0 426 1 218 329 129 12 chr3 173194720 173194805 -54329773 + MER91C DNA MER1_type 25 119 -21 358 236 107 64 chr3 173194860 173195093 -54329485 + L1ME4a LINE L1 5860 6102 -19 27 0 0 0 chr3 173195405 173195432 -54329146 + AT_rich Low_complexity Low_complexity 1 27 0 472 281 80 20 chr3 173196212 173196411 -54328167 - MIR SINE MIR 0 262 52 645 235 174 103 chr3 173196630 173197045 -54327533 - MLT1F LTR MaLR 0 542 83 1896 143 10 0 chr3 173197045 173197339 -54327239 - AluSx SINE Alu -15 297 1 645 235 174 103 chr3 173197339 173197429 -54327149 - MLT1F LTR MaLR -459 83 1 530 267 85 53 chr3 173197503 173197750 -54326828 - MLT1K LTR MaLR -5 583 329 1477 183 77 42 chr3 173198038 173198415 -54326163 + MLT1B LTR MaLR 1 390 0 1721 208 34 17 chr3 173198552 173199000 -54325578 - MLT1C LTR MaLR -10 616 1 21 82 0 0 chr3 173199086 173199135 -54325443 + AT_rich Low_complexity Low_complexity 1 49 0 280 233 0 0 chr3 173200558 173200618 -54323960 + L1ME2 LINE L1 37 96 -6300 4703 262 87 34 chr3 173200627 173202920 -54321658 + L1ME2 LINE L1 157 2547 -3668 787 167 79 19 chr3 173202908 173203124 -54321454 + L1ME2 LINE L1 4314 4542 -1673 * 2692 221 51 43 chr3 173203250 173204158 -54320420 + L1ME2 LINE L1 4533 5447 -768 2230 206 137 18 chr3 173204251 173204927 -54319651 + L1ME2 LINE L1 5454 6371 -32 190 330 78 26 chr3 173206433 173206548 -54318030 + L2 LINE L2 3179 3299 -14 438 342 67 14 chr3 173209840 173210501 -54314077 + L1MEc LINE L1 785 1480 -4916 201 315 9 9 chr3 173211268 173211376 -54313202 + GA-rich Low_complexity Low_complexity 1 108 0 255 248 137 26 chr3 173211409 173211526 -54313052 - L2 LINE L2 0 3313 3184 553 304 45 63 chr3 173211622 173212000 -54312578 - MLT1J LTR MaLR -113 398 28 22 35 0 0 chr3 173212163 173212192 -54312386 + AT_rich Low_complexity Low_complexity 1 29 0 294 330 50 55 chr3 173212772 173212972 -54311606 - MIR SINE MIR -52 210 12 21 0 0 0 chr3 173214099 173214120 -54310458 + AT_rich Low_complexity Low_complexity 1 21 0 1658 193 7 3 chr3 173214286 173214582 -54309996 - AluJb SINE Alu -15 297 1 1715 219 82 21 chr3 173215043 173215468 -54309110 + MLT1C LTR MaLR 1 451 -16 1842 142 57 35 chr3 173215468 173215835 -54308743 + THE1C LTR MaLR 1 375 0 9269 143 25 20 chr3 173215837 173217408 -54307170 + THE1C-int LTR MaLR 3 1580 0 1904 149 55 22 chr3 173217408 173217771 -54306807 + THE1C LTR MaLR 1 375 0 510 304 99 43 chr3 173218111 173218414 -54306164 + LTR16C LTR ERVL 156 475 -16 1022 220 28 0 chr3 173218697 173218911 -54305667 - MER115 DNA AcHobo -50 643 424 341 337 10 0 chr3 173219043 173219141 -54305437 - MER115 DNA AcHobo -468 225 127 2058 145 3 0 chr3 173219587 173219898 -54304680 - AluSx SINE Alu 0 312 1 22 88 0 0 chr3 173220461 173220518 -54304060 + AT_rich Low_complexity Low_complexity 1 57 0 234 328 93 27 chr3 173221590 173221823 -54302755 - L1MC/D LINE L1 -1879 5929 5666 2259 132 25 6 chr3 173221823 173222180 -54302398 + THE1B LTR MaLR 1 364 0 234 328 93 27 chr3 173222180 173222278 -54302300 - L1MC/D LINE L1 -2142 5666 5576 355 303 11 0 chr3 173222666 173222755 -54301823 + L2 LINE L2 3183 3272 0 2026 129 0 0 chr3 173223358 173223653 -54300925 + AluSq SINE Alu 1 295 -18 763 198 134 32 chr3 173224052 173224269 -54300309 - MER8 DNA MER2_type 0 239 1 587 201 156 55 chr3 173224473 173224672 -54299906 + MER20 DNA MER1_type 1 219 0 29 0 0 0 chr3 173224855 173224884 -54299694 + AT_rich Low_complexity Low_complexity 1 29 0 2455 44 3 0 chr3 173225649 173225945 -54298633 + AluY SINE Alu 1 297 -14 238 322 11 0 chr3 173227056 173227143 -54297435 + L1P LINE L1 3758 3845 -2301 701 303 85 47 chr3 173227332 173227543 -54297035 + L1ME1 LINE L1 4109 4311 -1835 2091 133 3 0 chr3 173227543 173227844 -54296734 + AluSx SINE Alu 1 302 -10 701 303 85 47 chr3 173227844 173228187 -54296391 + L1ME1 LINE L1 4311 4684 -1462 254 291 19 29 chr3 173228292 173228395 -54296183 + MLT1L LTR MaLR 145 246 -369 227 303 13 13 chr3 173228495 173228571 -54296007 + MLT1K LTR MaLR 372 447 -141 299 44 22 0 chr3 173228584 173228629 -54295949 + (CAAAAA)n Simple_repeat Simple_repeat 1 46 0 1828 261 53 19 chr3 173228986 173229607 -54294971 + L1ME1 LINE L1 5520 6161 -5 2095 115 0 7 chr3 173229671 173229966 -54294612 - AluSc SINE Alu -16 293 1 316 250 120 19 chr3 173230170 173230278 -54294300 + L1ME LINE L1 5316 5434 -687 510 351 84 30 chr3 173230657 173231262 -54293316 - L2 LINE L2 -35 3237 2600 2316 42 0 3 chr3 173232406 173232731 -54291847 + AluY SINE Alu 1 324 0 553 266 87 6 chr3 173232731 173232904 -54291674 + MIR SINE MIR 28 214 -48 192 135 0 0 chr3 173232934 173232971 -54291607 + (TTA)n Simple_repeat Simple_repeat 2 38 0 240 330 57 11 chr3 173233056 173233144 -54291434 + MIR SINE MIR 58 149 -113 238 300 42 4 chr3 173233527 173233660 -54290918 - MER5A DNA MER1_type -8 181 1 233 256 33 33 chr3 173233684 173233774 -54290804 - MIR SINE MIR 0 262 173 695 250 13 19 chr3 173233786 173233942 -54290636 - MIR SINE MIR -36 226 72 1294 164 18 36 chr3 173234101 173234430 -54290148 + MER33 DNA MER1_type 1 323 -1 35 0 0 0 chr3 173236186 173236221 -54288357 + AT_rich Low_complexity Low_complexity 1 35 0 409 153 0 24 chr3 173236372 173236457 -54288121 - L1PA15 LINE L1 -1 6164 6082 2488 114 39 7 chr3 173236621 173236978 -54287600 - L1PB3 LINE L1 0 7573 7200 360 0 0 0 chr3 173236978 173237018 -54287560 + (CA)n Simple_repeat Simple_repeat 2 41 0 2488 114 39 7 chr3 173237018 173237071 -54287507 - L1PB3 LINE L1 -373 7200 7150 4162 163 16 51 chr3 173237071 173237988 -54286590 - L1PB3 LINE L1 -1599 5966 5082 1630 178 42 0 chr3 173237988 173238320 -54286258 + L1MA6 LINE L1 5955 6300 0 309 298 75 12 chr3 173239047 173239208 -54285370 - L1ME4a LINE L1 -6 6115 5945 21 0 0 0 chr3 173239224 173239245 -54285333 + AT_rich Low_complexity Low_complexity 1 21 0 3469 116 19 26 chr3 173239246 173239832 -54284746 - L1MA2 LINE L1 -1 6303 5722 1430 135 12 48 chr3 173239832 173240084 -54284494 - MSTB LTR MaLR -181 245 3 3933 182 26 29 chr3 173240085 173240907 -54283671 - L1PB3 LINE L1 -3087 4478 3655 2254 103 3 10 chr3 173240907 173241219 -54283359 - AluSg SINE Alu 0 310 1 3933 182 26 29 chr3 173241219 173241262 -54283316 - L1PB3 LINE L1 -3910 3655 3613 194 0 39 0 chr3 173241262 173241288 -54283290 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 3933 182 26 29 chr3 173241288 173241673 -54282905 - L1PB3 LINE L1 -3952 3613 3238 12285 82 8 1 chr3 173241673 173244149 -54280429 - L1PA7 LINE L1 0 6154 3668 239 0 32 0 chr3 173244182 173244213 -54280365 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1521 170 7 42 chr3 173244213 173244502 -54280076 - AluJb SINE Alu -33 279 1 197 339 24 24 chr3 173244530 173244657 -54279921 - L2 LINE L2 -556 2758 2632 1590 183 13 37 chr3 173244819 173245119 -54279459 + AluJo SINE Alu 1 293 -19 2195 93 14 0 chr3 173245859 173246150 -54278428 + AluSq SINE Alu 1 295 -18 220 373 123 5 chr3 173246775 173246979 -54277599 - MIR SINE MIR -24 238 11 312 242 145 16 chr3 173248091 173248215 -54276363 - MIR SINE MIR -54 208 69 180 77 0 0 chr3 173248322 173248348 -54276230 + (TC)n Simple_repeat Simple_repeat 2 27 0 206 353 148 40 chr3 173249050 173249549 -54275029 - L2 LINE L2 -1044 2270 1718 303 336 148 8 chr3 173249563 173249691 -54274887 - L2 LINE L2 -5 3267 3122 23 68 0 0 chr3 173250176 173250220 -54274358 + AT_rich Low_complexity Low_complexity 1 44 0 833 354 83 14 chr3 173250891 173251481 -54273097 + L2 LINE L2 2340 2970 -344 1311 197 34 4 chr3 173251588 173251852 -54272726 - AluJo SINE Alu -38 274 3 960 237 171 27 chr3 173251945 173252213 -54272365 - MLT1G LTR MaLR 0 530 243 * 974 259 93 8 chr3 173252203 173252462 -54272116 - MLT1G1 LTR MaLR -293 302 22 1229 252 35 70 chr3 173254600 173255060 -54269518 - LTR40b LTR ERVL -15 447 4 266 149 50 8 chr3 173255301 173255422 -54269156 + (TA)n Simple_repeat Simple_repeat 1 126 0 1608 183 7 25 chr3 173255447 173255731 -54268847 - AluJb SINE Alu -31 281 3 544 217 98 116 chr3 173256390 173256796 -54267782 + L1MC5 LINE L1 7384 7782 -179 1600 181 10 7 chr3 173257412 173257704 -54266874 - AluJb SINE Alu -19 293 1 23 0 0 0 chr3 173258013 173258036 -54266542 + AT_rich Low_complexity Low_complexity 1 23 0 422 181 14 0 chr3 173258507 173258579 -54265999 + MER94 DNA DNA 3 75 -59 1546 219 0 0 chr3 173258744 173259041 -54265537 + AluJo SINE Alu 1 297 -15 378 360 28 6 chr3 173259718 173259896 -54264682 + MLT1I LTR MaLR 40 221 -188 242 220 20 0 chr3 173260900 173260950 -54263628 + CT-rich Low_complexity Low_complexity 6 56 0 493 211 231 0 chr3 173261616 173261763 -54262815 - MER5A DNA MER1_type 0 189 9 207 291 58 12 chr3 173262527 173262613 -54261965 + MIR SINE MIR 88 177 -85 2362 97 0 0 chr3 173262640 173262948 -54261630 - AluSx SINE Alu -4 308 1 591 92 0 101 chr3 173263894 173264003 -54260575 + MER4A LTR ERV1 1 98 -566 1857 147 6 22 chr3 173264004 173264352 -54260226 + MER4A LTR ERV1 264 664 0 2548 103 252 49 chr3 173264355 173264926 -54259652 + MER4A-int LTR ERV1 1 687 -5911 1388 222 65 37 chr3 173265080 173265431 -54259147 + MER4A-int LTR ERV1 1852 2212 -4119 2639 111 42 12 chr3 173265464 173266347 -54258231 + MER4B-int LTR ERV1 199 1180 -5578 3834 78 88 45 chr3 173266363 173267055 -54257523 + MER4B-int LTR ERV1 1764 2485 -4113 975 202 74 5 chr3 173267070 173267273 -54257305 - LTR8 LTR ERV1 -474 217 1 4167 139 73 22 chr3 173267273 173268166 -54256412 + MER4A-int LTR ERV1 2737 3674 -2924 16356 102 48 21 chr3 173268173 173270858 -54253720 + MER4A-int LTR ERV1 3840 6598 0 518 130 9 102 chr3 173270859 173270967 -54253611 + MER4A LTR ERV1 1 98 -566 1625 136 23 22 chr3 173270967 173271312 -54253266 + MER4A LTR ERV1 261 664 0 5401 132 31 2 chr3 173271725 173272703 -54251875 - L1PA16 LINE L1 0 6166 5163 2250 78 0 0 chr3 173273216 173273499 -54251079 + AluY SINE Alu 2 284 -27 180 305 49 12 chr3 173274548 173274630 -54249948 + MIR SINE MIR 64 148 -60 254 229 0 0 chr3 173274984 173275032 -54249546 + L2 LINE L2 3223 3270 -2 26 50 0 0 chr3 173275872 173275912 -54248666 + AT_rich Low_complexity Low_complexity 1 40 0 1088 242 54 22 chr3 173276067 173276344 -54248234 - MLT1A1 LTR MaLR -61 304 19 185 318 9 112 chr3 173277627 173277734 -54246844 - L2 LINE L2 -218 3054 2959 1188 159 5 0 chr3 173277906 173278101 -54246477 - L1PA16 LINE L1 -9 6157 5962 5160 143 18 9 chr3 173278151 173279501 -54245077 + L1PA16 LINE L1 4802 6155 -11 1460 166 3 41 chr3 173279519 173279814 -54244764 + AluJo SINE Alu 29 312 0 21 0 0 0 chr3 173279823 173279844 -54244734 + AT_rich Low_complexity Low_complexity 1 21 0 187 286 89 18 chr3 173280018 173280074 -54244504 - L3b LINE CR1 -21 1562 1503 2070 141 3 3 chr3 173280573 173280885 -54243693 + AluSx SINE Alu 1 312 0 256 321 0 36 chr3 173280893 173280977 -54243601 + L2 LINE L2 3192 3272 0 2049 118 0 21 chr3 173281113 173281443 -54243135 + AluSq SINE Alu 1 324 0 1380 153 0 5 chr3 173281737 173281946 -54242632 - AluJo SINE Alu -100 212 5 24 0 0 0 chr3 173282291 173282315 -54242263 + AT_rich Low_complexity Low_complexity 1 24 0 364 144 28 56 chr3 173282318 173282498 -54242080 + (TTATA)n Simple_repeat Simple_repeat 4 178 0 * 448 144 78 0 chr3 173282420 173282623 -54241955 + (TA)n Simple_repeat Simple_repeat 1 218 0 2308 68 14 0 chr3 173282964 173283256 -54241322 + AluY SINE Alu 1 296 -15 21 0 0 0 chr3 173283305 173283326 -54241252 + AT_rich Low_complexity Low_complexity 1 21 0 330 291 170 28 chr3 173283528 173283669 -54240909 - MER5A DNA MER1_type -3 186 26 25 0 0 0 chr3 173287316 173287341 -54237237 + AT_rich Low_complexity Low_complexity 1 25 0 333 329 13 20 chr3 173287589 173287738 -54236840 - L2 LINE L2 -1 3312 3165 1110 186 0 48 chr3 173287799 173288030 -54236548 - AluJo SINE Alu -8 304 85 27 29 0 0 chr3 173288766 173288800 -54235778 + AT_rich Low_complexity Low_complexity 1 34 0 1897 147 7 0 chr3 173288801 173289093 -54235485 - AluJo SINE Alu -18 294 1 2455 68 0 3 chr3 173290302 173290610 -54233968 - AluY SINE Alu -4 307 1 195 269 0 90 chr3 173291537 173291615 -54232963 - L2 LINE L2 -1 3271 3201 298 328 0 34 chr3 173291724 173291843 -54232735 - L2 LINE L2 -234 3038 2924 299 340 104 12 chr3 173291953 173292212 -54232366 - L2 LINE L2 -1304 2010 1728 261 0 0 0 chr3 173292699 173292728 -54231850 + (TG)n Simple_repeat Simple_repeat 2 30 0 476 159 32 24 chr3 173344780 173344906 -54179672 - LTR49 LTR ERV1 -1 594 468 21 0 0 0 chr3 173345101 173345122 -54179456 + AT_rich Low_complexity Low_complexity 1 21 0 472 360 15 20 chr3 173345767 173345967 -54178611 + LTR16A LTR ERVL 34 232 -218 9896 128 31 5 chr3 173346102 173348776 -54175802 - L1PBa LINE L1 -3335 3527 635 1055 164 5 0 chr3 173348776 173348971 -54175607 - L1PBa LINE L1 -6662 201 6 1145 315 41 19 chr3 173349104 173349669 -54174909 + HERV16 LTR ERVL 109 685 -4311 740 273 110 13 chr3 173349833 173349890 -54174688 + HERV16 LTR ERVL 915 965 -4031 315 71 0 0 chr3 173349890 173349932 -54174646 + (CA)n Simple_repeat Simple_repeat 2 43 0 740 273 110 13 chr3 173349932 173350174 -54174404 + HERV16 LTR ERVL 965 1243 -3753 263 276 31 43 chr3 173350524 173350687 -54173891 + HERV16 LTR ERVL 4536 4696 -300 437 333 7 0 chr3 173351599 173351734 -54172844 + MER115 DNA AcHobo 153 288 -405 527 104 0 0 chr3 173351903 173351980 -54172598 + MADE1 DNA Mariner 1 77 -3 395 345 50 21 chr3 173352348 173352586 -54171992 + MIR SINE MIR 18 262 0 218 398 39 47 chr3 173354996 173355252 -54169326 + L2 LINE L2 2943 3196 -76 2289 181 7 9 chr3 173356681 173357237 -54167341 + L1MB3 LINE L1 5456 6181 -2 278 311 112 36 chr3 173357456 173357707 -54166871 - MLT1L LTR MaLR -221 394 125 207 0 0 0 chr3 173358185 173358208 -54166370 + (CAAAA)n Simple_repeat Simple_repeat 2 24 0 301 286 83 52 chr3 173358715 173359252 -54165326 - L1ME LINE L1 -428 5734 5175 533 147 86 9 chr3 173359269 173359385 -54165193 - L1MC1 LINE L1 0 6333 6209 2269 75 0 17 chr3 173359415 173359710 -54164868 - AluSc SINE Alu -19 290 1 2375 66 7 7 chr3 173360178 173360480 -54164098 + AluSg SINE Alu 1 302 -8 201 121 0 0 chr3 173360555 173360588 -54163990 + (GA)n Simple_repeat Simple_repeat 1 33 0 609 293 20 20 chr3 173361597 173361795 -54162783 + MIR SINE MIR 65 262 0 2076 126 0 0 chr3 173361879 173362172 -54162406 - AluY SINE Alu -18 293 1 22 0 0 0 chr3 173362172 173362194 -54162384 + AT_rich Low_complexity Low_complexity 1 22 0 573 335 101 22 chr3 173362274 173362568 -54162010 - L3 LINE CR1 -8 1569 1239 2068 171 28 3 chr3 173362568 173362924 -54161654 - MLT1A1 LTR MaLR 0 365 1 573 335 101 22 chr3 173362924 173362996 -54161582 - L3 LINE CR1 -338 1239 1174 260 322 121 7 chr3 173363075 173363224 -54161354 + MIR SINE MIR 82 247 -15 2223 119 94 0 chr3 173363308 173363423 -54161155 + L1PB3 LINE L1 5668 5771 -383 258 105 0 0 chr3 173363423 173363461 -54161117 + (TA)n Simple_repeat Simple_repeat 1 38 0 2223 119 94 0 chr3 173363461 173363707 -54160871 + L1PB3 LINE L1 5771 6063 -91 29 0 0 0 chr3 173363707 173363736 -54160842 + AT_rich Low_complexity Low_complexity 1 29 0 407 280 93 27 chr3 173363857 173364007 -54160571 + MER91A DNA MER1_type 25 184 -12 214 384 93 17 chr3 173365009 173365181 -54159397 + L2 LINE L2 3082 3266 -6 642 262 90 76 chr3 173365426 173365799 -54158779 + MSTD LTR MaLR 1 396 0 2080 121 7 13 chr3 173366634 173366940 -54157638 + AluSx SINE Alu 1 304 -8 773 169 0 0 chr3 173367139 173367269 -54157309 - FLAM_C SINE Alu -13 130 1 212 254 36 0 chr3 173367269 173367324 -54157254 + MIR SINE MIR 102 158 -104 1995 100 44 4 chr3 173367811 173368121 -54156457 + AluY SINE Alu 1 321 0 225 204 174 44 chr3 173369036 173369306 -54155272 + L1M3e LINE L1 485 789 -6241 705 171 0 8 chr3 173369405 173369522 -54155056 + LTR8 LTR ERV1 22 137 -554 1860 85 0 0 chr3 173369560 173369806 -54154772 - L1PA7 LINE L1 -18 6136 5891 12047 116 12 51 chr3 173369812 173372251 -54152327 - L1P3 LINE L1 -3997 2464 36 1526 99 9 0 chr3 173372229 173372441 -54152137 - L1P3 LINE L1 -6240 221 8 * 21 0 0 0 chr3 173372513 173372534 -54152044 + AT_rich Low_complexity Low_complexity 1 21 0 560 270 30 21 chr3 173372571 173372804 -54151774 + L1ME LINE L1 555 789 -5281 366 23 0 0 chr3 173373618 173373661 -54150917 + (TA)n Simple_repeat Simple_repeat 2 44 0 861 345 40 38 chr3 173376735 173377187 -54147391 - L2 LINE L2 -9 3304 2852 186 338 25 25 chr3 173377187 173377267 -54147311 + L2 LINE L2 3229 3308 -5 1367 235 52 21 chr3 173377475 173377805 -54146773 - MLT1A1 LTR MaLR -28 336 1 193 336 19 19 chr3 173378574 173378678 -54145900 + L2 LINE L2 1304 1407 -1907 1156 341 137 18 chr3 173378767 173379997 -54144581 + L2 LINE L2 1597 2973 -341 318 271 59 0 chr3 173380173 173380258 -54144320 + L2 LINE L2 3219 3308 -5 21 57 0 0 chr3 173380379 173380414 -54144164 + AT_rich Low_complexity Low_complexity 1 35 0 299 260 21 21 chr3 173380540 173380636 -54143942 + L1ME4a LINE L1 5967 6062 -59 367 320 132 0 chr3 173380738 173380966 -54143612 + L2 LINE L2 1896 2153 -1161 1870 133 0 75 chr3 173382655 173382987 -54141591 + AluSq SINE Alu 3 309 -4 339 85 0 0 chr3 173383005 173383052 -54141526 + (TG)n Simple_repeat Simple_repeat 2 48 0 253 204 0 0 chr3 173384496 173384550 -54140028 - L1MC4 LINE L1 -1337 6705 6652 219 279 15 0 chr3 173384559 173384627 -54139951 + (TA)n Simple_repeat Simple_repeat 1 69 0 553 335 39 35 chr3 173384632 173384862 -54139716 - MIR SINE MIR 0 262 32 619 261 17 28 chr3 173385495 173385675 -54138903 + MER45A DNA AcHobo 1 178 0 1763 151 17 14 chr3 173386254 173386546 -54138032 + AluJb SINE Alu 1 293 -19 25 0 0 0 chr3 173386567 173386592 -54137986 + AT_rich Low_complexity Low_complexity 1 25 0 459 254 156 98 chr3 173386618 173386862 -54137716 + MIR SINE MIR 3 260 -2 350 218 143 38 chr3 173387000 173387124 -54137454 + MIR SINE MIR 49 192 -16 26 0 0 0 chr3 173387237 173387263 -54137315 + AT_rich Low_complexity Low_complexity 1 26 0 1752 178 7 3 chr3 173387284 173387571 -54137007 + AluJo SINE Alu 2 289 -23 509 339 59 21 chr3 173387586 173387825 -54136753 - MIR SINE MIR -7 255 8 233 186 57 0 chr3 173387855 173387925 -54136653 + MER116 DNA Mariner 1 74 -6 29 90 0 0 chr3 173387926 173388004 -54136574 + AT_rich Low_complexity Low_complexity 1 78 0 1508 159 36 25 chr3 173388978 173389276 -54135302 - AluJo SINE Alu 0 312 31 185 337 23 12 chr3 173390141 173390227 -54134351 - MIR3 SINE MIR -14 194 108 216 163 0 0 chr3 173390430 173390473 -54134105 + A-rich Low_complexity Low_complexity 1 43 0 6793 59 15 1 chr3 173390956 173391841 -54132737 + L1PA7 LINE L1 5254 6150 -4 237 184 0 0 chr3 173392303 173392341 -54132237 - MER63 DNA MER1_type -891 39 2 204 40 0 0 chr3 173392417 173392442 -54132136 + (CA)n Simple_repeat Simple_repeat 1 25 0 1947 124 0 11 chr3 173394859 173395172 -54129406 - AluSg SINE Alu 0 310 1 1904 161 17 0 chr3 173395754 173396045 -54128533 + AluSx SINE Alu 1 296 -16 204 215 15 31 chr3 173396461 173396526 -54128052 + (TCTA)n Simple_repeat Simple_repeat 3 66 0 209 294 25 147 chr3 173396824 173397028 -54127550 + L2 LINE L2 2322 2500 -814 425 325 0 0 chr3 173397128 173397245 -54127333 - MIR SINE MIR -114 148 32 396 156 39 0 chr3 173399090 173399167 -54125411 + L1MA4 LINE L1 6216 6295 -5 1723 98 56 0 chr3 173399846 173400080 -54124498 - AluSq SINE Alu -20 293 47 351 288 104 18 chr3 173400080 173400243 -54124335 - HAL1 LINE L1 -200 2307 2131 226 220 0 0 chr3 173400250 173400300 -54124278 - L1MC4 LINE L1 -1341 6701 6652 378 282 91 33 chr3 173400326 173400411 -54124167 - HAL1 LINE L1 -926 1581 1502 433 207 89 77 chr3 173400411 173400580 -54123998 + FAM SINE Alu 1 171 -4 378 282 91 33 chr3 173400580 173400735 -54123843 - HAL1 LINE L1 -1005 1502 1327 1082 173 0 10 chr3 173400777 173400974 -54123604 + MLT1B LTR MaLR 3 197 -193 266 302 114 30 chr3 173401050 173401252 -54123326 + HAL1 LINE L1 435 653 -1854 871 159 0 0 chr3 173401733 173401871 -54122707 + AluJo SINE Alu 2 139 -173 240 215 13 63 chr3 173402811 173402890 -54121688 + L1ME2 LINE L1 5997 6071 -93 3182 79 0 0 chr3 173402903 173403307 -54121271 + MLT2A1 LTR ERVL 1 404 -40 312 247 0 12 chr3 173403307 173403388 -54121190 + L1MC4 LINE L1 6624 6703 -1339 338 100 11 33 chr3 173403389 173403479 -54121099 + (TA)n Simple_repeat Simple_repeat 2 89 0 2264 89 0 0 chr3 173403624 173403906 -54120672 + AluSx SINE Alu 14 295 -17 272 242 108 25 chr3 173403928 173404048 -54120530 + L1MC4 LINE L1 7908 8037 -5 25849 137 13 17 chr3 173404823 173411280 -54113298 + L1PA8 LINE L1 1 6487 0 22 0 0 0 chr3 173412094 173412116 -54112462 + AT_rich Low_complexity Low_complexity 1 22 0 34 0 0 0 chr3 173412377 173412411 -54112167 + AT_rich Low_complexity Low_complexity 1 34 0 30 27 0 0 chr3 173412785 173412822 -54111756 + AT_rich Low_complexity Low_complexity 1 37 0 466 252 71 18 chr3 173413511 173413888 -54110690 - MER113 DNA MER1_type? -108 413 1 33 25 0 0 chr3 173414377 173414417 -54110161 + AT_rich Low_complexity Low_complexity 1 40 0 21 82 0 0 chr3 173414523 173414572 -54110006 + AT_rich Low_complexity Low_complexity 1 49 0 1634 166 19 22 chr3 173414687 173415000 -54109578 + AluJb SINE Alu 1 312 0 968 189 63 15 chr3 173416083 173416289 -54108289 - MER2 DNA MER2_type 0 345 130 1506 147 42 131 chr3 173416289 173416671 -54107907 + MER7A DNA MER2_type 1 346 0 532 163 0 0 chr3 173416696 173416782 -54107796 - MER2 DNA MER2_type -214 131 46 * 678 185 0 0 chr3 173416775 173416883 -54107695 - MER2 DNA MER2_type -237 108 1 216 67 0 0 chr3 173417065 173417095 -54107483 + (TG)n Simple_repeat Simple_repeat 1 30 0 23 54 0 0 chr3 173417474 173417511 -54107067 + AT_rich Low_complexity Low_complexity 1 37 0 835 199 81 28 chr3 173417898 173418109 -54106469 - AluJo SINE Alu -6 306 85 22 0 0 0 chr3 173418188 173418210 -54106368 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 173418643 173418671 -54105907 + AT_rich Low_complexity Low_complexity 1 28 0 1862 116 0 40 chr3 173418671 173418972 -54105606 - AluY SINE Alu 0 306 17 210 258 0 0 chr3 173419643 173419705 -54104873 + (TA)n Simple_repeat Simple_repeat 1 62 0 22 35 0 0 chr3 173419727 173419756 -54104822 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 173420871 173420892 -54103686 + AT_rich Low_complexity Low_complexity 1 21 0 199 50 75 0 chr3 173420922 173420962 -54103616 + T-rich Low_complexity Low_complexity 2 44 0 324 325 40 16 chr3 173421663 173421789 -54102789 + MIR SINE MIR 13 141 -121 2406 80 0 3 chr3 173421808 173422121 -54102457 + AluSx SINE Alu 1 312 0 406 135 10 10 chr3 173422124 173422220 -54102358 + (TA)n Simple_repeat Simple_repeat 2 97 0 201 147 0 0 chr3 173422290 173422324 -54102254 + (TA)n Simple_repeat Simple_repeat 2 35 0 420 20 0 0 chr3 173422327 173422376 -54102202 + (TCTA)n Simple_repeat Simple_repeat 2 50 0 513 303 19 19 chr3 173422521 173422683 -54101895 - MER5B DNA MER1_type 0 178 17 186 316 120 26 chr3 173422807 173422924 -54101654 + L2 LINE L2 1939 2066 -1248 1991 307 129 23 chr3 173423543 173424458 -54100120 - L2 LINE L2 -1754 1560 549 472 182 0 0 chr3 173424461 173424538 -54100040 - MER58 DNA MER1_type -9 2411 130 195 189 0 0 chr3 173424547 173424600 -54099978 + CT-rich Low_complexity Low_complexity 1 53 0 445 262 8 16 chr3 173424617 173424739 -54099839 - MER58 DNA MER1_type -220 121 1 238 340 277 0 chr3 173424748 173424907 -54099671 - L2 LINE L2 -2802 512 310 345 275 8 17 chr3 173424921 173425041 -54099537 - L1ME LINE L1 -431 5733 5615 246 62 0 0 chr3 173425651 173425683 -54098895 + (TTTTC)n Simple_repeat Simple_repeat 3 34 0 5577 153 26 17 chr3 173425760 173426119 -54098459 - L1PB1 LINE L1 0 6151 5796 306 0 0 0 chr3 173426119 173426153 -54098425 + (TG)n Simple_repeat Simple_repeat 2 35 0 5577 153 26 17 chr3 173426153 173427221 -54097357 - L1PB1 LINE L1 -355 5796 4706 248 0 31 0 chr3 173427221 173427253 -54097325 + (TTTG)n Simple_repeat Simple_repeat 4 36 0 5577 153 26 17 chr3 173427253 173427834 -54096744 - L1PB1 LINE L1 -1445 4706 4131 283 287 0 53 chr3 173428088 173428108 -54096470 + MLT1J LTR MaLR 317 337 -174 2372 112 27 30 chr3 173428108 173428473 -54096105 - THE1B LTR MaLR 0 364 1 283 287 0 53 chr3 173428473 173428546 -54096032 + MLT1J LTR MaLR 337 405 -106 230 95 24 0 chr3 173430025 173430067 -54094511 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 1673 185 11 0 chr3 173430324 173430610 -54093968 + AluSx SINE Alu 1 289 -23 25 0 0 0 chr3 173431428 173431453 -54093125 + AT_rich Low_complexity Low_complexity 1 25 0 191 114 29 0 chr3 173431822 173431857 -54092721 + (TTA)n Simple_repeat Simple_repeat 1 36 0 1427 180 3 76 chr3 173432121 173432437 -54092141 - AluJo SINE Alu -11 301 9 273 48 24 0 chr3 173432942 173432984 -54091594 - MADE1 DNA Mariner -37 43 1 1700 242 82 84 chr3 173432984 173433334 -54091244 - L1ME3A LINE L1 -27 6143 5794 1556 158 29 0 chr3 173433334 173433612 -54090966 + L1MB1 LINE L1 5871 6156 -12 1700 242 82 84 chr3 173433612 173434122 -54090456 - L1ME3A LINE L1 -376 5794 5284 2008 114 3 24 chr3 173434240 173434538 -54090040 - AluSg SINE Alu -18 292 1 3167 154 53 116 chr3 173434612 173435486 -54089092 - L1MB7 LINE L1 0 6184 5366 27 0 0 0 chr3 173436277 173436304 -54088274 + AT_rich Low_complexity Low_complexity 1 27 0 2265 108 0 0 chr3 173436718 173437023 -54087555 + AluSx SINE Alu 1 305 -7 2155 150 70 0 chr3 173438781 173439155 -54085423 + MER57A LTR ERV1 4 403 0 286 323 10 0 chr3 173439169 173439265 -54085313 + L2 LINE L2 3123 3219 -94 2185 99 0 7 chr3 173439272 173439564 -54085014 - AluSx SINE Alu -7 305 16 2502 148 99 31 chr3 173440375 173440931 -54083647 + LTR49 LTR ERV1 1 594 -1 267 333 65 0 chr3 173440958 173441051 -54083527 - L2 LINE L2 -37 3235 3137 471 308 19 33 chr3 173441405 173441616 -54082962 - MIR SINE MIR -38 224 17 28 48 0 0 chr3 173441893 173441935 -54082643 + AT_rich Low_complexity Low_complexity 1 42 0 429 351 76 30 chr3 173442007 173442484 -54082094 + L2 LINE L2 2726 3228 -85 291 190 0 0 chr3 173443766 173443824 -54080754 + (TA)n Simple_repeat Simple_repeat 1 58 0 236 163 23 0 chr3 173443824 173443867 -54080711 - Alu SINE Alu -14 288 245 743 272 18 9 chr3 173444700 173444917 -54079661 - HERVFH21 LTR ERV1 -404 5182 4964 17484 182 30 21 chr3 173445249 173448043 -54076535 - HERVFH21 LTR ERV1 -1198 5331 2476 6919 62 29 0 chr3 173448043 173448915 -54075663 + MER11D LTR ERVK 1 897 0 17484 182 30 21 chr3 173448915 173451351 -54073227 - HERVFH21 LTR ERV1 -4053 2476 62 774 205 121 48 chr3 173451402 173451734 -54072844 - LTR21B LTR ERV1 0 438 83 434 282 166 0 chr3 173451877 173452070 -54072508 - L1MC4 LINE L1 -1033 6860 6542 741 206 0 0 chr3 173452774 173452905 -54071673 - FLAM_C SINE Alu -2 131 1 387 232 38 154 chr3 173454474 173454592 -54069986 + L1M4 LINE L1 5106 5171 -975 2108 137 13 0 chr3 173454592 173454898 -54069680 + AluSx SINE Alu 3 312 0 387 232 38 154 chr3 173454898 173455072 -54069506 + L1M4 LINE L1 5171 5364 -782 2311 92 0 0 chr3 173455209 173455503 -54069075 + AluY SINE Alu 1 294 -17 2971 191 45 7 chr3 173455646 173456012 -54068566 + MER45R DNA AcHobo 866 1217 -364 2217 108 3 10 chr3 173456012 173456326 -54068252 + AluSx SINE Alu 1 312 0 2971 191 45 7 chr3 173456326 173456649 -54067929 + MER45R DNA AcHobo 1217 1581 0 308 375 55 10 chr3 173457978 173458178 -54066400 + L1MC4a LINE L1 4900 5108 -1038 1034 283 82 48 chr3 173458304 173458688 -54065890 + L1MC4a LINE L1 5260 5629 -2179 2378 108 43 8 chr3 173458688 173459040 -54065538 - THE1B LTR MaLR 0 364 1 1034 283 82 48 chr3 173459040 173459443 -54065135 + L1MC4a LINE L1 5629 6074 -1734 218 236 0 14 chr3 173459701 173459773 -54064805 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 1587 137 11 0 chr3 173461269 173461539 -54063039 + HERVFH21 LTR ERV1 4384 4656 -1873 2311 80 0 0 chr3 173461869 173462155 -54062423 + AluSg1 SINE Alu 11 296 -13 540 140 75 0 chr3 173462209 173462302 -54062276 + FLAM_C SINE Alu 7 106 -37 4033 166 21 5 chr3 173463452 173464832 -54059746 - L1PA13 LINE L1 -204 5959 4559 1381 232 32 43 chr3 173465418 173465883 -54058695 + MER31B LTR ERV1 7 466 0 309 363 35 0 chr3 173465893 173466064 -54058514 + L1ME3A LINE L1 748 924 -5472 1745 244 67 80 chr3 173466514 173466580 -54057998 + L1ME3A LINE L1 782 847 -5559 1892 127 4 4 chr3 173466580 173466856 -54057722 + AluSq SINE Alu 33 308 -5 1745 244 67 80 chr3 173466856 173468006 -54056572 + L1ME3A LINE L1 847 1960 -4446 1907 191 3 21 chr3 173468006 173468378 -54056200 - MLT1A1 LTR MaLR 0 365 1 1745 244 67 80 chr3 173468378 173468414 -54056164 + L1ME3A LINE L1 1960 1995 -4411 2444 245 54 14 chr3 173468417 173468673 -54055905 + L1ME3A LINE L1 2342 2586 -3820 2157 128 54 20 chr3 173468673 173469025 -54055553 - THE1B LTR MaLR 0 364 1 2444 245 54 14 chr3 173469025 173469792 -54054786 + L1ME3A LINE L1 2586 3361 -3045 1303 150 31 143 chr3 173469808 173470194 -54054384 + MER7A DNA MER2_type 1 341 -5 2457 68 3 0 chr3 173470267 173470577 -54054001 - AluY SINE Alu 0 311 1 307 235 22 22 chr3 173470620 173470756 -54053822 + L1ME3A LINE L1 3474 3609 -2797 1392 159 14 21 chr3 173470908 173470987 -54053591 - MER44D DNA MER2_type -1882 609 531 270 0 0 0 chr3 173470987 173471017 -54053561 + (TG)n Simple_repeat Simple_repeat 2 31 0 1392 159 14 21 chr3 173471017 173471220 -54053358 - MER44D DNA MER2_type -1960 531 59 476 281 55 24 chr3 173471221 173471474 -54053104 + L1ME3A LINE L1 5641 5901 -523 371 303 28 23 chr3 173471503 173471721 -54052857 + L1ME3A LINE L1 5989 6207 -223 746 264 77 23 chr3 173473575 173473927 -54050651 - L1ME3A LINE L1 -1 6169 5799 2065 114 14 3 chr3 173473972 173474269 -54050309 + AluSx SINE Alu 1 300 -12 446 295 112 55 chr3 173474628 173475011 -54049567 + MLT1L LTR MaLR 195 599 -16 30 0 0 0 chr3 173477633 173477663 -54046915 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr3 173477993 173478023 -54046555 + AT_rich Low_complexity Low_complexity 1 30 0 251 368 108 5 chr3 173478517 173478740 -54045838 + L2 LINE L2 2448 2693 -621 300 262 84 47 chr3 173478756 173478863 -54045715 - L2 LINE L2 -1 3312 3202 485 309 17 119 chr3 173478865 173479218 -54045360 + L2 LINE L2 2890 3206 -66 2152 119 0 10 chr3 173479499 173479794 -54044784 - AluY SINE Alu -19 292 1 2189 111 24 0 chr3 173480742 173481039 -54043539 - AluSx SINE Alu -8 304 1 34 72 0 0 chr3 173481541 173481610 -54042968 + AT_rich Low_complexity Low_complexity 1 69 0 1669 167 26 32 chr3 173482693 173483004 -54041574 + AluJo SINE Alu 1 309 -3 1351 146 0 0 chr3 173483273 173483472 -54041106 + AluSx SINE Alu 1 199 -113 255 31 0 0 chr3 173483487 173483519 -54041059 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 487 237 50 7 chr3 173483700 173483839 -54040739 - MIR3 SINE MIR -9 199 55 1390 85 4 34 chr3 173484321 173484556 -54040022 - pTR5 LTR ERV1 -2039 399 172 406 120 53 74 chr3 173484565 173484659 -54039919 - LTR30 LTR ERV1 -75 624 229 5125 117 46 62 chr3 173484661 173485827 -54038751 - pTR5 LTR ERV1 -417 2021 741 279 321 18 0 chr3 173485896 173486005 -54038573 + LTR67 LTR ERVL 418 528 -29 332 216 113 41 chr3 173487907 173488004 -54036574 + L2 LINE L2 3171 3274 -39 198 103 0 0 chr3 173488031 173488060 -54036518 + (GGGA)n Simple_repeat Simple_repeat 4 32 0 440 298 38 0 chr3 173489018 173489149 -54035429 + MIR SINE MIR 119 254 -8 280 268 52 65 chr3 173490115 173490268 -54034310 - Charlie8 DNA MER1_type -2266 151 1 2221 107 3 0 chr3 173491225 173491514 -54033064 + AluSx SINE Alu 1 290 -22 472 165 63 31 chr3 173491514 173491641 -54032937 + L1MC/D LINE L1 189 319 -6245 395 242 6 79 chr3 173491641 173491819 -54032759 + MLT1D LTR MaLR 2 166 -460 1000 192 0 5 chr3 173491901 173492094 -54032484 + MLT1D LTR MaLR 314 505 0 2829 238 11 80 chr3 173492097 173493119 -54031459 + L1MC/D LINE L1 144 1094 -4951 970 180 24 71 chr3 173493119 173493374 -54031204 - MLT1B LTR MaLR 0 390 148 490 276 76 16 chr3 173493374 173493689 -54030889 + L1MC/D LINE L1 4599 4932 -1632 375 209 9 43 chr3 173493703 173493818 -54030760 + L1MC/D LINE L1 6010 6120 -2083 410 192 26 0 chr3 173493878 173493956 -54030622 + Tigger7 DNA MER2_type 1 80 -259 735 191 51 6 chr3 173494018 173494175 -54030403 + MER5A DNA MER1_type 1 164 -25 2275 146 22 0 chr3 173494441 173494797 -54029781 - THE1B LTR MaLR 0 364 1 851 209 17 11 chr3 173496339 173496516 -54028062 + MER45A DNA AcHobo 1 178 0 230 295 86 29 chr3 173497298 173497403 -54027175 - L2 LINE L2 -8 3264 3154 198 352 56 0 chr3 173497590 173497661 -54026917 - L2 LINE L2 -659 2655 2581 294 217 36 12 chr3 173498139 173498222 -54026356 + L1ME3 LINE L1 5535 5619 -543 616 214 95 68 chr3 173498224 173498352 -54026226 + L1ME3 LINE L1 5651 5774 -388 1834 142 144 21 chr3 173498352 173498733 -54025845 - MSTA LTR MaLR 0 428 1 616 214 95 68 chr3 173498733 173498898 -54025680 + L1ME3 LINE L1 5774 5952 -210 1617 251 42 58 chr3 173498904 173499222 -54025356 - MLT1E LTR MaLR 0 593 288 2374 87 0 0 chr3 173499222 173499521 -54025057 - AluSg SINE Alu -11 299 1 1617 251 42 58 chr3 173499521 173499800 -54024778 - MLT1E LTR MaLR -305 288 6 318 228 117 25 chr3 173499842 173500004 -54024574 + L1ME3 LINE L1 5985 6161 -1 204 111 0 0 chr3 173500153 173500189 -54024389 + (GA)n Simple_repeat Simple_repeat 2 37 0 2157 115 0 0 chr3 173500792 173501080 -54023498 + AluSg SINE Alu 1 288 -22 926 244 140 32 chr3 173501840 173502240 -54022338 - MER77 LTR ERV1 -4 601 181 187 338 250 0 chr3 173504870 173505006 -54019572 + MER5B DNA MER1_type 9 178 0 1021 229 199 0 chr3 173506828 173507130 -54017448 - MLT1A1 LTR MaLR -3 362 1 933 206 18 23 chr3 173508254 173508473 -54016105 + MER20 DNA MER1_type 2 219 0 427 297 70 27 chr3 173508564 173508820 -54015758 + MLT1J LTR MaLR 6 272 -239 476 84 0 0 chr3 173508825 173508896 -54015682 - MSTA LTR MaLR 0 428 358 1845 164 50 14 chr3 173508972 173509331 -54015247 - MSTA LTR MaLR -56 372 1 4837 163 18 16 chr3 173509425 173510331 -54014247 - MER49 LTR ERV1 -11 912 5 923 138 115 22 chr3 173510362 173510841 -54013737 + LTR29 LTR ERV1 1 594 -1 2197 129 3 0 chr3 173514017 173514328 -54010250 + AluSx SINE Alu 1 312 0 2633 180 70 86 chr3 173514419 173515120 -54009458 - LTR8A LTR ERV1 0 727 38 339 202 0 0 chr3 173515272 173515371 -54009207 + (CTGGGG)n Simple_repeat Simple_repeat 4 102 0 189 217 43 0 chr3 173515402 173515494 -54009084 + (CTGGGG)n Simple_repeat Simple_repeat 1 96 0 182 290 129 0 chr3 173516021 173516083 -54008495 + MIR SINE MIR 58 127 -81 2147 78 32 36 chr3 173516351 173516659 -54007919 - AluY SINE Alu -3 308 2 428 299 120 0 chr3 173516663 173516847 -54007731 - MIR SINE MIR -3 259 54 264 30 0 0 chr3 173517229 173517262 -54007316 + (GA)n Simple_repeat Simple_repeat 1 33 0 192 40 0 0 chr3 173517261 173517286 -54007292 + (TG)n Simple_repeat Simple_repeat 1 25 0 * 615 293 20 20 chr3 173518265 173518463 -54006115 + MIR SINE MIR 65 262 0 2043 126 0 0 chr3 173518547 173518840 -54005738 - AluY SINE Alu -18 293 1 22 0 0 0 chr3 173518840 173518862 -54005716 + AT_rich Low_complexity Low_complexity 1 22 0 572 324 110 10 chr3 173518945 173519235 -54005343 - L3 LINE CR1 -8 1569 1251 329 216 0 14 chr3 173519238 173519312 -54005266 - MLT1A1 LTR MaLR 0 365 293 270 239 0 0 chr3 173519490 173519561 -54005017 + (CATATA)n Simple_repeat Simple_repeat 2 72 0 654 86 51 8 chr3 173521067 173521184 -54003394 + C-rich Low_complexity Low_complexity 5 126 0 198 0 0 0 chr3 173521215 173521237 -54003341 + (TCCCC)n Simple_repeat Simple_repeat 5 26 0 1341 194 13 45 chr3 173521237 173521551 -54003027 - AluJo SINE Alu -8 304 1 240 111 185 0 chr3 173521968 173522022 -54002556 + L1MA4A LINE L1 6236 6299 -4 2165 120 0 0 chr3 173522080 173522381 -54002197 - AluSq SINE Alu -12 301 1 188 67 33 0 chr3 173522715 173522745 -54001833 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 318 333 45 17 chr3 173523234 173523411 -54001167 + MIR SINE MIR 74 255 -7 1608 223 54 87 chr3 173525158 173525975 -53998603 - L1MEc LINE L1 -973 5242 4453 261 179 18 0 chr3 173525974 173526030 -53998548 - L1MB7 LINE L1 -5 6179 6123 * 1832 146 23 62 chr3 173526125 173526515 -53998063 + THE1C LTR MaLR 1 375 0 332 261 31 31 chr3 173526762 173526923 -53997655 - L1MEd LINE L1 -5018 1101 941 679 251 19 14 chr3 173527458 173527669 -53996909 + L1M1 LINE L1 2994 3205 -4360 958 260 60 52 chr3 173527740 173528038 -53996540 - L1MEc LINE L1 -3564 2651 2357 2355 61 10 0 chr3 173528038 173528334 -53996244 - AluY SINE Alu -12 299 1 958 260 60 52 chr3 173528334 173528658 -53995920 - L1MEc LINE L1 -3858 2357 2050 2698 289 228 49 chr3 173528669 173531067 -53993511 - L2 LINE L2 -305 3008 92 756 0 0 0 chr3 173531818 173531902 -53992676 + (TATATG)n Simple_repeat Simple_repeat 4 87 0 2168 85 3 64 chr3 173533758 173534088 -53990490 + AluSx SINE Alu 3 312 0 440 202 79 0 chr3 173534544 173534633 -53989945 + MER5A DNA MER1_type 94 189 0 26 0 0 0 chr3 173534809 173534835 -53989743 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr3 173535198 173535234 -53989344 + AT_rich Low_complexity Low_complexity 1 36 0 2391 72 7 0 chr3 173535254 173535559 -53989019 + AluSc SINE Alu 1 307 -2 322 250 76 7 chr3 173535759 173535903 -53988675 - L1MEc LINE L1 -2154 4061 3908 1112 205 4 34 chr3 173536207 173536446 -53988132 - MER46A DNA MER2_type -4 232 1 388 288 107 56 chr3 173536446 173536866 -53987712 - L1MEc LINE L1 -2654 3561 3154 444 316 9 13 chr3 173537120 173537351 -53987227 - L1MEc LINE L1 -3549 2666 2437 356 283 45 53 chr3 173537356 173537583 -53986995 - L1MEc LINE L1 -3838 2410 2193 361 281 58 26 chr3 173537994 173538197 -53986381 - L1M2 LINE L1 -4318 1898 1510 2185 107 0 3 chr3 173538207 173538505 -53986073 - AluSq SINE Alu -16 297 1 233 356 58 0 chr3 173539598 173539685 -53984893 - MIR SINE MIR -78 130 39 21 0 0 0 chr3 173539883 173539904 -53984674 + AT_rich Low_complexity Low_complexity 1 21 0 556 286 39 22 chr3 173541105 173541287 -53983291 - MIR SINE MIR -71 191 7 206 100 0 50 chr3 173542170 173542210 -53982368 + (TTTTG)n Simple_repeat Simple_repeat 5 42 0 199 318 72 50 chr3 173542756 173543074 -53981504 + L2 LINE L2 1369 1693 -1621 241 180 39 56 chr3 173543074 173543252 -53981326 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 195 339 93 81 chr3 173544091 173544401 -53980177 - L2 LINE L2 -15 3257 2944 21 71 0 0 chr3 173544924 173544966 -53979612 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr3 173544981 173545006 -53979572 + AT_rich Low_complexity Low_complexity 1 25 0 489 252 41 16 chr3 173545084 173545207 -53979371 - MER8 DNA MER2_type -5 234 109 1324 211 10 32 chr3 173545262 173545575 -53979003 + AluJo SINE Alu 1 306 -6 2123 128 0 3 chr3 173545585 173545897 -53978681 + AluSx SINE Alu 1 311 -1 320 270 15 29 chr3 173545912 173546049 -53978529 + HAL1b LINE L1 400 534 -814 21 0 0 0 chr3 173546484 173546505 -53978073 + AT_rich Low_complexity Low_complexity 1 21 0 2168 110 0 3 chr3 173547268 173547568 -53977010 - AluSx SINE Alu -13 299 1 938 159 242 0 chr3 173547584 173547811 -53976767 - MSTA LTR MaLR -146 282 1 329 253 13 13 chr3 173547848 173547923 -53976655 - Tigger3(Golem) DNA MER2_type -2954 75 1 774 212 56 22 chr3 173547935 173548114 -53976464 - MLT2B2 LTR ERVL -39 476 292 275 289 60 30 chr3 173548131 173548363 -53976215 - L1M4 LINE L1 -3372 2774 2536 695 302 32 20 chr3 173549379 173549631 -53974947 + L1ME1 LINE L1 5892 6146 -20 467 279 65 111 chr3 173549639 173549949 -53974629 + HAL1b LINE L1 59 347 -1001 2062 129 7 0 chr3 173549949 173550243 -53974335 + AluSg SINE Alu 1 296 -14 467 279 65 111 chr3 173550243 173550347 -53974231 + HAL1b LINE L1 347 454 -894 556 141 0 0 chr3 173550369 173550461 -53974117 + L1MC3 LINE L1 7007 7098 -687 371 220 0 55 chr3 173550468 173550559 -53974019 + MLT1F1 LTR MaLR 45 130 -437 2644 207 16 7 chr3 173550561 173551131 -53973447 + L1MD3 LINE L1 7416 7990 -5 6175 99 8 6 chr3 173552025 173553426 -53971152 - L1PA14 LINE L1 0 6161 4763 4342 162 4 0 chr3 173553426 173554173 -53970405 + L1PA14 LINE L1 4001 4750 -1396 24 77 0 0 chr3 173554869 173554921 -53969657 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr3 173555418 173555439 -53969139 + AT_rich Low_complexity Low_complexity 1 21 0 430 94 13 60 chr3 173556080 173556229 -53968349 + (TA)n Simple_repeat Simple_repeat 2 143 0 1317 211 29 77 chr3 173556250 173556629 -53967949 + MLT1B LTR MaLR 30 390 0 1459 102 106 0 chr3 173557131 173557377 -53967201 + L1MA5A LINE L1 6021 6292 -5 1311 245 55 63 chr3 173558813 173559307 -53965271 + MLT1D LTR MaLR 16 505 0 32 0 0 0 chr3 173560448 173560480 -53964098 + AT_rich Low_complexity Low_complexity 1 32 0 206 302 0 0 chr3 173560545 173560598 -53963980 + GA-rich Low_complexity Low_complexity 3 55 0 181 256 0 47 chr3 173561582 173561625 -53962953 - L3 LINE CR1 -247 1330 1290 1301 186 82 11 chr3 173565607 173565887 -53958691 - AluJo SINE Alu 0 312 13 336 198 17 17 chr3 173566459 173566575 -53958003 + (TATATG)n Simple_repeat Simple_repeat 2 117 0 294 207 0 0 chr3 173566814 173566872 -53957706 + L1MD3 LINE L1 7639 7696 -299 3915 167 37 32 chr3 173567041 173567541 -53957037 + L1MA9 LINE L1 3701 4197 -2115 2307 91 3 0 chr3 173567541 173567837 -53956741 + AluY SINE Alu 1 297 -14 3915 167 37 32 chr3 173567837 173568460 -53956118 + L1MA9 LINE L1 4197 4816 -1496 1428 194 62 73 chr3 173568460 173568897 -53955681 - MSTB1 LTR MaLR 0 432 1 3915 167 37 32 chr3 173568897 173569403 -53955175 + L1MA9 LINE L1 4816 5318 -994 3915 157 33 42 chr3 173569403 173569682 -53954896 + L1MA9 LINE L1 5519 5799 -513 246 32 0 0 chr3 173569682 173569713 -53954865 + (CA)n Simple_repeat Simple_repeat 2 32 0 3915 157 33 42 chr3 173569713 173570222 -53954356 + L1MA9 LINE L1 5799 6300 -12 3915 167 37 32 chr3 173570222 173570256 -53954322 + L1MA9 LINE L1 5318 6300 -12 268 253 13 0 chr3 173570245 173570324 -53954254 + L1M4 LINE L1 3598 3677 -2469 * 643 130 0 0 chr3 173570324 173570416 -53954162 + AluSg/x SINE Alu 205 296 -14 2358 231 116 44 chr3 173570479 173571632 -53952946 + L1M4 LINE L1 3750 4985 -1161 28 29 0 0 chr3 173572309 173572344 -53952234 + AT_rich Low_complexity Low_complexity 1 35 0 30 0 0 0 chr3 173573045 173573075 -53951503 + AT_rich Low_complexity Low_complexity 1 30 0 568 234 43 48 chr3 173574316 173574504 -53950074 - MER101 LTR ERV1 -55 419 233 226 114 57 0 chr3 173574505 173574540 -53950038 - MER101B LTR ERV1 -285 285 249 244 297 9 9 chr3 173576280 173576391 -53948187 + (TATATG)n Simple_repeat Simple_repeat 3 113 0 21 36 0 0 chr3 173576695 173576723 -53947855 + AT_rich Low_complexity Low_complexity 1 28 0 13428 157 14 115 chr3 173576875 173580298 -53944280 + L1P LINE L1 12 3087 -3059 5380 81 0 0 chr3 173580301 173581015 -53943563 + L1PA8 LINE L1 5459 6172 0 2133 128 0 0 chr3 173581550 173581840 -53942738 - AluSx SINE Alu -16 296 7 443 250 108 0 chr3 173581941 173582061 -53942517 + MIR SINE MIR 67 199 -63 1374 167 8 36 chr3 173583928 173584180 -53940398 + MLT2B1 LTR ERVL 1 245 -275 794 242 60 87 chr3 173584339 173584591 -53939987 - MER54A LTR ERVL -210 591 190 889 214 0 82 chr3 173584664 173584884 -53939694 + MLT2B2 LTR ERVL 242 443 -72 542 172 37 0 chr3 173584890 173584901 -53939677 + (TA)n Simple_repeat Simple_repeat 1 10 -291 207 0 0 0 chr3 173584901 173584924 -53939654 + (CA)n Simple_repeat Simple_repeat 2 24 0 542 172 37 0 chr3 173584924 173585181 -53939397 + (TA)n Simple_repeat Simple_repeat 10 301 0 367 158 30 8 chr3 173585193 173585326 -53939252 + (TA)n Simple_repeat Simple_repeat 1 136 0 279 0 0 0 chr3 173585352 173585383 -53939195 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 288 125 0 0 chr3 173585383 173585423 -53939155 + MLT2D LTR ERVL 375 414 0 8427 59 11 1 chr3 173585961 173587074 -53937504 - L1P LINE L1 -2858 3288 2165 7441 39 1 0 chr3 173587074 173588573 -53936005 + L1PA5 LINE L1 4652 6151 -3 184 352 74 34 chr3 173588680 173588856 -53935722 + L2 LINE L2 3131 3313 0 273 193 0 35 chr3 173589745 173589802 -53934776 + MLT1A2 LTR MaLR 1 55 -319 1120 236 10 80 chr3 173589802 173590149 -53934429 + L1MC5 LINE L1 2556 2926 -3220 1493 184 34 44 chr3 173590149 173590443 -53934135 - AluJo SINE Alu -19 293 3 1120 236 10 80 chr3 173590443 173591080 -53933498 + L1MC5 LINE L1 2926 3426 -2720 * 1945 176 43 49 chr3 173591072 173591561 -53933017 + L1MB4 LINE L1 5694 6179 -1 1823 136 48 45 chr3 173591742 173592116 -53932462 + THE1C LTR MaLR 1 375 0 363 143 89 71 chr3 173592599 173592711 -53931867 + MER51D LTR ERV1 500 613 -44 710 301 106 30 chr3 173592938 173593563 -53931015 + L1MC5 LINE L1 5333 6004 -1804 330 316 58 34 chr3 173594697 173594800 -53929778 + HAL1b LINE L1 77 176 -1172 1857 154 13 13 chr3 173594800 173595112 -53929466 + AluJb SINE Alu 1 312 0 330 316 58 34 chr3 173595112 173595425 -53929153 + HAL1b LINE L1 176 503 -845 3815 122 87 68 chr3 173595534 173596304 -53928274 + LTR1 LTR ERV1 1 785 0 1681 245 58 50 chr3 173596904 173597685 -53926893 + L1MC5 LINE L1 6744 7530 -431 323 286 29 43 chr3 173597776 173597986 -53926592 + L1ME3A LINE L1 5964 6170 0 1818 185 60 8 chr3 173597990 173598640 -53925938 + L1M3 LINE L1 4965 5642 -541 1631 168 37 40 chr3 173599247 173599623 -53924955 + THE1C LTR MaLR 1 375 0 8755 126 78 11 chr3 173599625 173601105 -53923473 + THE1C-int LTR MaLR 3 1580 0 590 174 0 43 chr3 173601105 173601220 -53923358 + THE1C LTR MaLR 1 110 -265 10969 176 19 23 chr3 173601220 173604900 -53919678 - L1 LINE L1 -1452 6113 2436 5490 158 38 22 chr3 173604888 173605260 -53919318 - L1PB1 LINE L1 0 7570 7206 * 207 69 0 0 chr3 173605260 173605289 -53919289 + (TA)n Simple_repeat Simple_repeat 1 29 0 5490 158 38 22 chr3 173605289 173606900 -53917678 - L1PB1 LINE L1 -364 7206 5547 * 6043 159 36 11 chr3 173606899 173608778 -53915800 - L1PB1 LINE L1 -5094 2471 459 972 219 67 54 chr3 173608784 173609081 -53915497 + LTR9B LTR ERV1 7 307 -337 205 186 0 0 chr3 173609184 173609227 -53915351 + (TTTAA)n Simple_repeat Simple_repeat 3 45 0 253 347 32 0 chr3 173609347 173609442 -53915136 - MIR SINE MIR -78 184 87 792 238 167 16 chr3 173610345 173610597 -53913981 + Charlie1b DNA MER1_type 1 290 -233 1525 58 0 0 chr3 173610598 173610786 -53913792 - HERVK9 LTR ERVK -94 5822 5635 22772 84 7 1 chr3 173610883 173614878 -53909700 - HERVK9 LTR ERVK -282 5634 1625 4370 101 29 21 chr3 173614878 173615535 -53909043 - HERVK9 LTR ERVK -5254 662 1 3096 127 13 45 chr3 173615535 173616063 -53908515 - MER9 LTR ERVK 0 511 1 384 301 88 0 chr3 173616088 173616281 -53908297 + L1MC4 LINE L1 3596 3805 -2341 2067 121 0 0 chr3 173616798 173617078 -53907500 + AluSx SINE Alu 1 280 -32 225 83 0 0 chr3 173617081 173617117 -53907461 + (TTAA)n Simple_repeat Simple_repeat 3 38 0 29 0 0 0 chr3 173617190 173617219 -53907359 + AT_rich Low_complexity Low_complexity 1 29 0 1733 60 98 0 chr3 173618064 173618299 -53906279 - L1PA7 LINE L1 0 6154 5897 356 298 81 52 chr3 173618505 173618753 -53905825 + L1MC4 LINE L1 5283 5537 -2271 285 190 17 0 chr3 173618778 173618836 -53905742 + MER94 DNA DNA 11 69 -65 206 296 121 15 chr3 173618909 173619041 -53905537 + L2 LINE L2 3167 3312 -1 1648 222 62 52 chr3 173619388 173619888 -53904690 + MLT1D LTR MaLR 1 505 0 234 191 0 0 chr3 173620038 173620080 -53904498 + MIR SINE MIR 220 261 -1 230 189 27 27 chr3 173620086 173620160 -53904418 + (TA)n Simple_repeat Simple_repeat 1 74 0 180 152 0 0 chr3 173620375 173620408 -53904170 + (TA)n Simple_repeat Simple_repeat 1 33 0 300 239 11 45 chr3 173620427 173620515 -53904063 + L1MC4 LINE L1 6614 6698 -1344 803 216 0 0 chr3 173620515 173620663 -53903915 - FRAM SINE Alu -29 147 1 647 196 49 37 chr3 173621213 173621428 -53903150 - L1MC3 LINE L1 -1 7970 6142 27 49 0 0 chr3 173621969 173622010 -53902568 + AT_rich Low_complexity Low_complexity 1 41 0 2554 44 0 0 chr3 173622942 173623239 -53901339 + AluY SINE Alu 1 297 -14 2229 106 7 0 chr3 173624505 173624806 -53899772 + AluSq SINE Alu 4 306 -7 210 250 0 0 chr3 173625304 173625364 -53899214 + A-rich Low_complexity Low_complexity 1 60 0 1030 213 104 69 chr3 173626205 173626627 -53897951 - LTR56 LTR ERV1 0 445 9 6015 183 44 53 chr3 173626852 173628996 -53895582 - LTR56-int LTR ERV1 -212 6145 3613 433 262 25 61 chr3 173629040 173629394 -53895184 - LTR56-int LTR ERV1 -1927 2953 1528 4327 153 17 4 chr3 173629530 173630231 -53894347 + MER50 LTR ERV1 1 710 -24 393 243 89 33 chr3 173630361 173630575 -53894003 - LTR56-int LTR ERV1 -6690 1430 1205 * 455 161 8 81 chr3 173630571 173630695 -53893883 - LTR57-int LTR ERVL -4292 1051 937 * 515 179 45 18 chr3 173630585 173630697 -53893881 - LTR49-int LTR ERV1 -3235 3096 2982 1643 166 15 4 chr3 173630700 173630965 -53893613 - LTR49-int LTR ERV1 -5787 1304 1037 1367 164 19 19 chr3 173630961 173631224 -53893354 - LTR49-int LTR ERV1 -3328 3003 2741 * 948 194 28 129 chr3 173631207 173631603 -53892975 - LTR49-int LTR ERV1 -4502 1829 1474 * 1713 153 59 43 chr3 173631605 173632039 -53892539 - MER21A LTR ERV1 0 931 377 1249 138 14 107 chr3 173632045 173632231 -53892347 - MER21A LTR ERV1 -667 264 113 1976 151 7 0 chr3 173632231 173632535 -53892043 + AluSx SINE Alu 1 306 -6 1249 138 14 107 chr3 173632535 173632639 -53891939 - MER21A LTR ERV1 -818 113 1 215 132 38 19 chr3 173632655 173632708 -53891870 + (TA)n Simple_repeat Simple_repeat 1 54 0 526 200 10 0 chr3 173632723 173632823 -53891755 - LTR49-int LTR ERV1 -4859 1472 1372 10945 169 8 17 chr3 173632889 173635810 -53888768 - L1PA13 LINE L1 -7 6156 3237 533 219 61 0 chr3 173636057 173636171 -53888407 - MER34B LTR ERV1 -440 125 5 218 54 0 27 chr3 173636437 173636474 -53888104 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 576 42 0 0 chr3 173636736 173636807 -53887771 + (CA)n Simple_repeat Simple_repeat 2 72 0 1087 213 49 78 chr3 173637188 173637447 -53887131 - LTR56 LTR ERV1 0 445 203 2005 82 0 43 chr3 173637447 173637729 -53886849 - AluY SINE Alu -12 299 30 1087 213 49 78 chr3 173637729 173637919 -53886659 - LTR56 LTR ERV1 -242 203 9 1781 178 0 10 chr3 173638312 173638616 -53885962 + AluJo SINE Alu 1 301 -11 2339 100 7 0 chr3 173638793 173639092 -53885486 + AluSx SINE Alu 1 301 -11 817 206 69 86 chr3 173639469 173639683 -53884895 + L1M4 LINE L1 4098 4304 -1842 1528 197 11 14 chr3 173639683 173639996 -53884582 + AluJb SINE Alu 6 317 0 817 206 69 86 chr3 173639996 173640212 -53884366 + L1M4 LINE L1 4304 4522 -1624 1774 98 0 0 chr3 173640227 173640451 -53884127 + AluJb SINE Alu 85 308 -4 2259 156 39 32 chr3 173640456 173640671 -53883907 + MER65A LTR ERV1 8 220 -225 4850 87 22 16 chr3 173640671 173641358 -53883220 - LTR8 LTR ERV1 0 691 1 2259 156 39 32 chr3 173641358 173641577 -53883001 + MER65A LTR ERV1 220 445 0 1455 240 98 11 chr3 173641580 173642047 -53882531 + L1M4 LINE L1 4518 5025 -1121 183 273 143 26 chr3 173642628 173642705 -53881873 - MIR SINE MIR -116 146 61 2678 140 18 61 chr3 173642975 173643154 -53881424 + LTR29 LTR ERV1 137 322 -300 2280 126 0 0 chr3 173643154 173643464 -53881114 + AluSx SINE Alu 3 312 0 2678 140 18 61 chr3 173643464 173643792 -53880786 + LTR29 LTR ERV1 322 622 0 248 159 0 0 chr3 173643813 173643857 -53880721 + LTR8A LTR ERV1 1 44 -683 2335 95 0 3 chr3 173643857 173644161 -53880417 - AluY SINE Alu -8 303 1 5856 201 30 34 chr3 173644169 173645072 -53879506 + L1P4 LINE L1 3865 4756 -1409 2129 103 7 0 chr3 173645072 173645353 -53879225 + AluSp SINE Alu 1 283 -30 5856 201 30 34 chr3 173645353 173646040 -53878538 + L1P4 LINE L1 4756 5445 -720 5466 89 50 43 chr3 173646040 173646860 -53877718 + LTR12 LTR ERV1 1 826 0 29151 91 16 15 chr3 173646860 173651736 -53872842 + HERV9 LTR ERV1 1 4954 -3445 1992 102 10 53 chr3 173651729 173652438 -53872140 + HERV9 LTR ERV1 703 1548 -7078 * 341 23 0 0 chr3 173652445 173652488 -53872090 + HERV9 LTR ERV1 1678 1720 -5176 * 644 75 43 0 chr3 173652482 173652576 -53872002 + HERV9 LTR ERV1 7756 7853 -546 238 177 16 16 chr3 173653350 173653412 -53871166 + CT-rich Low_complexity Low_complexity 3 64 0 1126 256 54 35 chr3 173653631 173654002 -53870576 + L1ME1 LINE L1 5784 6161 -5 243 0 0 0 chr3 173655399 173655426 -53869152 + (CA)n Simple_repeat Simple_repeat 2 28 0 2173 125 0 3 chr3 173655537 173655850 -53868728 + AluSx SINE Alu 1 312 0 219 88 0 0 chr3 173659310 173659344 -53865234 + (CA)n Simple_repeat Simple_repeat 1 34 0 24 0 0 0 chr3 173660317 173660341 -53864237 + AT_rich Low_complexity Low_complexity 1 24 0 1888 220 68 72 chr3 173661402 173662185 -53862393 + L1MC5 LINE L1 6625 7404 -557 333 243 0 0 chr3 173662224 173662327 -53862251 + L1ME4a LINE L1 4427 4529 -1617 2044 121 0 0 chr3 173662329 173662610 -53861968 + AluSx SINE Alu 1 281 -31 360 0 0 0 chr3 173662610 173662650 -53861928 + (CA)n Simple_repeat Simple_repeat 1 40 0 410 244 88 59 chr3 173662938 173663245 -53861333 + L1ME4a LINE L1 5604 5919 -202 2384 50 0 26 chr3 173663476 173663779 -53860799 + AluY SINE Alu 1 295 -16 1640 135 111 0 chr3 173664357 173664633 -53859945 - AluSx SINE Alu 0 306 3 21 0 0 0 chr3 173664639 173664660 -53859918 + AT_rich Low_complexity Low_complexity 1 21 0 504 212 127 0 chr3 173664660 173664778 -53859800 + FLAM_C SINE Alu 1 133 -10 860 78 0 26 chr3 173665296 173665412 -53859166 - AluSq/x SINE Alu -199 113 1 384 207 95 0 chr3 173665468 173665559 -53859019 + MER5A DNA MER1_type 4 105 -84 192 77 0 0 chr3 173666002 173666028 -53858550 + (TG)n Simple_repeat Simple_repeat 2 27 0 260 333 0 21 chr3 173666048 173666141 -53858437 + MLT1K LTR MaLR 33 123 -465 2342 142 12 46 chr3 173666936 173666962 -53857616 - MLT2D LTR ERVL -11 403 378 351 0 0 0 chr3 173666962 173667001 -53857577 + (TG)n Simple_repeat Simple_repeat 2 40 0 2342 142 12 46 chr3 173667001 173667391 -53857187 - MLT2D LTR ERVL -36 378 1 820 288 107 46 chr3 173667444 173667919 -53856659 - L2 LINE L2 -836 2478 1975 496 230 0 0 chr3 173668286 173668399 -53856179 - L1P LINE L1 -1777 4369 4257 * 1914 146 41 12 chr3 173668397 173668739 -53855839 + L1PA16 LINE L1 5698 6049 -117 630 282 79 48 chr3 173668757 173669222 -53855356 + HAL1b LINE L1 216 704 -644 1948 162 0 3 chr3 173669222 173669525 -53855053 - AluJo SINE Alu -10 302 1 630 282 79 48 chr3 173669525 173669640 -53854938 + HAL1b LINE L1 704 814 -534 261 266 38 32 chr3 173669932 173670090 -53854488 + L1MEc LINE L1 2236 2394 -4002 974 207 38 72 chr3 173670092 173670137 -53854441 + L1ME LINE L1 49 94 -6446 2126 116 0 3 chr3 173670137 173670457 -53854121 - AluSc SINE Alu 0 319 1 974 207 38 72 chr3 173670457 173670646 -53853932 + L1ME LINE L1 94 277 -6263 300 225 141 0 chr3 173670651 173670722 -53853856 + L1ME LINE L1 392 472 -6068 441 277 105 21 chr3 173670734 173670972 -53853606 + L1ME LINE L1 4647 4904 -1636 1020 270 102 27 chr3 173670996 173671400 -53853178 - L2 LINE L2 -2873 441 8 363 255 37 79 chr3 173671584 173671800 -53852778 + L1ME LINE L1 5734 5940 -2262 280 327 50 20 chr3 173671844 173672046 -53852532 + L1ME LINE L1 6015 6222 -334 2089 89 0 0 chr3 173673315 173673574 -53851004 + AluSg1 SINE Alu 35 293 -16 2151 121 0 25 chr3 173674023 173674337 -53850241 - AluSx SINE Alu -6 306 1 952 167 21 84 chr3 173674775 173675014 -53849564 + MLT1A1 LTR MaLR 4 227 -138 2213 114 0 0 chr3 173675916 173676215 -53848363 + AluSq SINE Alu 1 299 -14 21 0 0 0 chr3 173677150 173677171 -53847407 + AT_rich Low_complexity Low_complexity 1 21 0 577 246 0 0 chr3 173677323 173677433 -53847145 - MER81 DNA DNA -1 113 4 205 358 117 27 chr3 173678153 173678555 -53846023 - L2 LINE L2 -2240 1074 637 201 132 0 0 chr3 173678984 173679022 -53845556 + (GA)n Simple_repeat Simple_repeat 1 38 0 414 0 0 0 chr3 173679022 173679068 -53845510 + (TG)n Simple_repeat Simple_repeat 2 47 0 234 179 85 113 chr3 173679093 173679199 -53845379 - LTR28 LTR ERV1 -568 452 350 222 91 0 0 chr3 173679364 173679397 -53845181 + (TA)n Simple_repeat Simple_repeat 2 34 0 853 246 98 0 chr3 173679404 173679607 -53844971 - MIR SINE MIR -28 234 12 650 255 11 27 chr3 173679612 173679800 -53844778 + MER5A DNA MER1_type 3 187 -2 1385 264 66 36 chr3 173680495 173680994 -53843584 + L2 LINE L2 2239 2752 -562 1691 241 33 26 chr3 173681011 173681467 -53843111 - LTR40c LTR ERVL -6 459 1 805 294 22 13 chr3 173681468 173681696 -53842882 + L2 LINE L2 2748 2977 -337 1787 185 20 23 chr3 173681713 173682064 -53842514 + MLT1A1 LTR MaLR 4 353 -12 687 208 24 182 chr3 173682070 173682268 -53842310 + L2 LINE L2 2984 3095 -218 339 113 0 0 chr3 173682268 173682321 -53842257 + (CA)n Simple_repeat Simple_repeat 2 54 0 687 208 24 182 chr3 173682321 173682502 -53842076 + L2 LINE L2 3095 3303 -10 2226 100 0 0 chr3 173682502 173682791 -53841787 + AluSq SINE Alu 1 289 -24 195 42 0 0 chr3 173682791 173682815 -53841763 + (TA)n Simple_repeat Simple_repeat 2 25 0 395 40 0 0 chr3 173682920 173682970 -53841608 + MADE1 DNA Mariner 31 80 0 421 258 219 6 chr3 173683076 173683254 -53841324 - MIR SINE MIR -3 259 44 233 162 0 0 chr3 173683254 173683291 -53841287 + MER115 DNA AcHobo 1 37 -656 306 242 81 86 chr3 173685014 173685200 -53839378 + MER5A DNA MER1_type 2 186 -3 275 335 139 76 chr3 173685385 173685701 -53838877 + L2 LINE L2 2936 3271 -1 1462 123 11 25 chr3 173686458 173686735 -53837843 - L1MA4 LINE L1 -3 6297 6025 576 100 0 0 chr3 173687708 173687788 -53836790 + MADE1 DNA Mariner 1 80 0 22 0 0 0 chr3 173688416 173688438 -53836140 + AT_rich Low_complexity Low_complexity 1 22 0 206 291 68 68 chr3 173688654 173688771 -53835807 + MIR SINE MIR 31 147 -115 1462 150 29 4 chr3 173688892 173689160 -53835418 + AluJo SINE Alu 31 304 0 266 325 113 19 chr3 173689846 173690006 -53834572 - MIR SINE MIR 0 262 88 1302 155 23 76 chr3 173690007 173690271 -53834307 + AluJo SINE Alu 5 254 -58 207 350 0 0 chr3 173690275 173690335 -53834243 - MIR SINE MIR -158 104 45 614 49 0 0 chr3 173690952 173691033 -53833545 - L1P4 LINE L1 -440 5728 5648 1822 68 29 60 chr3 173691034 173691315 -53833263 + L1PA10 LINE L1 5886 6157 -11 204 40 0 0 chr3 173691431 173691456 -53833122 + (TTG)n Simple_repeat Simple_repeat 2 26 0 797 295 77 31 chr3 173692159 173692508 -53832070 + L2 LINE L2 2943 3307 -6 324 0 0 0 chr3 173692874 173692910 -53831668 + (TG)n Simple_repeat Simple_repeat 2 37 0 2553 32 3 26 chr3 173692962 173693272 -53831306 + AluY SINE Alu 1 303 -8 303 253 53 32 chr3 173694083 173694178 -53830400 + MIR3 SINE MIR 68 164 -44 274 325 50 0 chr3 173694183 173694263 -53830315 - MIR3 SINE MIR -7 201 118 317 263 30 10 chr3 173694786 173694885 -53829693 + GA-rich Low_complexity Low_complexity 3 103 0 740 190 0 0 chr3 173696233 173696349 -53828229 + FLAM_C SINE Alu 3 118 -15 22 35 0 0 chr3 173696349 173696378 -53828200 + AT_rich Low_complexity Low_complexity 1 29 0 1612 257 65 7 chr3 173696464 173696908 -53827670 + MER110 LTR ERV1 1 470 -21 1567 191 27 73 chr3 173697233 173697682 -53826896 - MSTC LTR MaLR 0 428 1 402 21 0 0 chr3 173697844 173697891 -53826687 + (CA)n Simple_repeat Simple_repeat 2 48 0 485 208 26 83 chr3 173698004 173698196 -53826382 + L1MC5 LINE L1 7731 7911 -50 415 275 54 48 chr3 173698206 173698373 -53826205 - L1ME4a LINE L1 -289 5832 5665 2558 68 0 0 chr3 173698504 173698872 -53825706 - AluY SINE Alu 0 369 2 1351 212 53 14 chr3 173698964 173699322 -53825256 - MLT1A2 LTR MaLR -2 372 1 1099 176 98 37 chr3 173699375 173699619 -53824959 - MSTC LTR MaLR -169 259 1 1325 210 50 4 chr3 173699620 173699901 -53824677 - MSTC-int LTR MaLR -1 1734 1441 974 153 6 0 chr3 173699919 173700096 -53824482 + GA-rich Low_complexity Low_complexity 2 179 0 233 143 0 20 chr3 173700124 173700173 -53824405 + (GGA)n Simple_repeat Simple_repeat 3 50 0 672 278 6 6 chr3 173700173 173700342 -53824236 - MSTC-int LTR MaLR -281 1454 1286 1225 161 16 0 chr3 173700345 173700538 -53824040 + MSTC LTR MaLR 232 427 -1 2421 70 3 22 chr3 173701056 173701372 -53823206 + AluSp SINE Alu 2 311 -2 30 45 0 0 chr3 173701973 173702017 -53822561 + AT_rich Low_complexity Low_complexity 1 44 0 9067 21 20 1 chr3 173702490 173704337 -53820241 - L1PA4 LINE L1 -3 6152 4285 812 128 398 0 chr3 173704338 173704534 -53820044 - L1P4 LINE L1 -566 5595 5322 1184 234 138 22 chr3 173706336 173706691 -53817887 + MSTD LTR MaLR 1 396 0 606 238 62 154 chr3 173707103 173707310 -53817268 + L2 LINE L2 2505 2729 -584 349 89 36 0 chr3 173707310 173707321 -53817257 + L1PA15-16 LINE L1 2421 2430 -4419 3232 143 20 6 chr3 173707321 173707860 -53816718 - L1PA16 LINE L1 -9 6157 5611 349 89 36 0 chr3 173707860 173707904 -53816674 + L1PA15-16 LINE L1 2430 2478 -4371 606 238 62 154 chr3 173707904 173708246 -53816332 + L2 LINE L2 2729 3050 -263 329 261 65 98 chr3 173708253 173708437 -53816141 + MER5B DNA MER1_type 1 178 0 265 313 94 57 chr3 173708452 173708644 -53815934 + L2 LINE L2 3095 3293 -20 2607 61 0 0 chr3 173709381 173709692 -53814886 - AluY SINE Alu 0 311 1 23 33 0 0 chr3 173709910 173709940 -53814638 + AT_rich Low_complexity Low_complexity 1 30 0 402 235 73 44 chr3 173710207 173710343 -53814235 - MIR3 SINE MIR -15 193 54 933 202 22 0 chr3 173711293 173711476 -53813102 + MER5A DNA MER1_type 2 188 -1 313 340 21 43 chr3 173711540 173711681 -53812897 + MIR3 SINE MIR 5 142 -66 1939 219 25 3 chr3 173712014 173712565 -53812013 - MER82 DNA MER2_type -17 636 7 315 0 0 0 chr3 173712660 173712694 -53811884 + (TG)n Simple_repeat Simple_repeat 1 69 0 315 0 0 0 chr3 173712694 173712729 -53811849 + (TG)n Simple_repeat Simple_repeat 2 36 0 571 295 8 8 chr3 173713273 173713402 -53811176 - L2 LINE L2 -6 3266 3138 951 212 40 83 chr3 173713466 173713768 -53810810 + MLT2B1 LTR ERVL 232 520 0 698 288 35 18 chr3 173713892 173714118 -53810460 - MIR SINE MIR -1 261 32 314 308 25 38 chr3 173714139 173714298 -53810280 - L2 LINE L2 -460 2854 2698 898 297 38 20 chr3 173716376 173716770 -53807808 + L1MC/D LINE L1 5307 5707 -2101 991 220 120 17 chr3 173717459 173717809 -53806769 - MER58D DNA MER1_type 0 386 1 199 258 76 0 chr3 173718367 173718433 -53806145 + L2 LINE L2 3186 3256 -16 1988 159 18 3 chr3 173718537 173718876 -53805702 - MER2 DNA MER2_type 0 344 1 369 0 0 0 chr3 173719210 173719251 -53805327 + (CA)n Simple_repeat Simple_repeat 1 41 0 2300 84 0 0 chr3 173719391 173719677 -53804901 - AluSq SINE Alu -17 296 11 229 261 92 0 chr3 173720061 173720126 -53804452 + L2 LINE L2 3158 3228 -44 229 353 53 38 chr3 173720259 173720392 -53804186 - MIR3 SINE MIR -31 177 43 215 103 26 0 chr3 173720811 173720850 -53803728 + (CA)n Simple_repeat Simple_repeat 2 41 0 2265 168 11 63 chr3 173721228 173721752 -53802826 - L1MA9 LINE L1 -34 6278 5782 292 196 22 51 chr3 173721752 173721890 -53802688 + (TTATA)n Simple_repeat Simple_repeat 1 134 0 2864 134 0 11 chr3 173721909 173722371 -53802207 - L1MA9 LINE L1 -527 5785 5329 1262 142 22 4 chr3 173722405 173722631 -53801947 - L1MA4 LINE L1 -8 6292 6063 2372 41 41 3 chr3 173722700 173722990 -53801588 + AluY SINE Alu 1 301 -10 1598 173 67 7 chr3 173723910 173724193 -53800385 + AluJb SINE Alu 1 300 -12 1634 249 30 39 chr3 173724586 173725024 -53799554 + LTR40c LTR ERVL 20 453 -12 374 69 17 0 chr3 173725042 173725100 -53799478 + (TG)n Simple_repeat Simple_repeat 2 60 0 562 259 96 12 chr3 173725101 173725267 -53799311 - MIR SINE MIR -75 187 8 22 35 0 0 chr3 173725287 173725316 -53799262 + AT_rich Low_complexity Low_complexity 1 29 0 202 279 58 58 chr3 173725532 173725618 -53798960 + L2 LINE L2 2968 3053 -219 316 91 30 0 chr3 173725862 173725928 -53798650 + (TA)n Simple_repeat Simple_repeat 2 69 0 285 329 48 71 chr3 173726843 173726982 -53797596 + MARNA DNA Mariner 123 264 -322 1867 149 19 16 chr3 173726982 173727290 -53797288 + AluJo SINE Alu 1 309 -3 285 329 48 71 chr3 173727290 173727445 -53797133 + MARNA DNA Mariner 264 410 -176 403 271 77 48 chr3 173728466 173728673 -53795905 + L2 LINE L2 3094 3306 -7 2422 117 5 24 chr3 173729307 173729676 -53794902 - THE1B LTR MaLR -2 362 1 1782 137 72 0 chr3 173731062 173731339 -53793239 + AluJb SINE Alu 1 297 -15 262 270 49 44 chr3 173731590 173731794 -53792784 + L1ME3A LINE L1 1618 1822 -4574 1372 158 91 0 chr3 173731949 173732246 -53792332 - MER33 DNA MER1_type 0 324 1 1224 269 103 2 chr3 173732396 173732793 -53791785 + LTR16A1 LTR ERVL 18 454 -3 1460 287 85 27 chr3 173732818 173733586 -53790992 + L1ME3A LINE L1 2156 2990 -3225 2159 66 0 0 chr3 173733586 173733859 -53790719 - L1PA5 LINE L1 -3 6151 5879 1460 287 85 27 chr3 173733859 173734286 -53790292 + L1ME3A LINE L1 2990 3391 -2824 399 283 30 24 chr3 173734403 173734569 -53790009 + L1ME3A LINE L1 4037 4203 -2012 322 100 33 0 chr3 173734608 173734668 -53789910 + (TAGA)n Simple_repeat Simple_repeat 2 63 0 1178 229 39 15 chr3 173734669 173735001 -53789577 + L1ME3A LINE L1 5820 6159 -80 44 0 0 0 chr3 173735031 173735075 -53789503 + AT_rich Low_complexity Low_complexity 1 44 0 2033 131 17 0 chr3 173735235 173735533 -53789045 - AluSx SINE Alu -9 303 1 21 57 0 0 chr3 173736351 173736386 -53788192 + AT_rich Low_complexity Low_complexity 1 35 0 752 256 71 7 chr3 173736824 173737105 -53787473 - L1MCc LINE L1 -4503 2619 2321 821 188 0 20 chr3 173737110 173737259 -53787319 - AluJo SINE Alu -164 148 3 1473 262 138 25 chr3 173737264 173737402 -53787176 - L1MCc LINE L1 -4863 2078 1957 730 57 9 9 chr3 173737402 173737507 -53787071 + (TTCC)n Simple_repeat Simple_repeat 2 106 0 1473 262 138 25 chr3 173737507 173738469 -53786109 - L1MCc LINE L1 -4984 1957 821 657 269 5 21 chr3 173738722 173738848 -53785730 - L1MCc LINE L1 -5972 451 327 768 221 53 66 chr3 173738848 173739074 -53785504 + MER58A DNA MER1_type 2 224 0 657 269 5 21 chr3 173739074 173739133 -53785445 - L1MCc LINE L1 -6096 327 269 329 307 39 7 chr3 173739427 173739580 -53784998 - L1MCc LINE L1 -6156 267 110 1137 148 63 5 chr3 173740280 173740503 -53784075 - MER41B LTR ERV1 -20 615 380 2173 125 0 3 chr3 173743619 173743932 -53780646 - AluSx SINE Alu 0 312 1 243 0 0 0 chr3 173744043 173744070 -53780508 + (TG)n Simple_repeat Simple_repeat 2 28 0 1126 256 54 35 chr3 173745467 173745838 -53778740 - L1ME1 LINE L1 -5 6161 5784 238 177 16 16 chr3 173746057 173746119 -53778459 + GA-rich Low_complexity Low_complexity 3 64 0 644 75 43 0 chr3 173746893 173746987 -53777591 - HERV17 LTR ERV1 -546 7853 7756 341 23 0 0 chr3 173746981 173747024 -53777554 - HERV17 LTR ERV1 -5176 1720 1678 * 1992 93 12 68 chr3 173747031 173747740 -53776838 - HERV17 LTR ERV1 -7078 1548 703 * 29139 91 16 15 chr3 173747733 173752609 -53771969 - HERV17 LTR ERV1 -3445 4954 1 5466 89 50 43 chr3 173752609 173753429 -53771149 - LTR12 LTR ERV1 0 826 1 2457 193 47 5 chr3 173753429 173754099 -53770479 - L1P4 LINE L1 -720 5445 4747 1885 139 7 0 chr3 173754116 173754397 -53770181 - AluSq SINE Alu -30 283 1 1142 113 21 21 chr3 173754397 173754583 -53769995 + MER21A LTR ERV1 79 264 -667 1713 153 59 43 chr3 173754589 173755023 -53769555 + MER21A LTR ERV1 377 931 0 948 194 28 129 chr3 173755025 173755421 -53769157 + LOR1-int LTR ERV1 1474 1829 -4502 * 1367 164 19 19 chr3 173755404 173755667 -53768911 + LOR1-int LTR ERV1 2741 3003 -3328 * 1643 166 15 4 chr3 173755663 173755928 -53768650 + LOR1-int LTR ERV1 1037 1304 -5787 515 179 45 18 chr3 173755931 173756043 -53768535 + LOR1-int LTR ERV1 2982 3096 -3235 455 161 8 81 chr3 173755933 173756057 -53768521 + LTR57-int LTR ERVL 937 1051 -4292 * 393 243 89 33 chr3 173756053 173756267 -53768311 + LOR1-int LTR ERV1 1205 1430 -6690 * 4327 153 17 4 chr3 173756396 173757097 -53767481 - MER50 LTR ERV1 -24 710 1 1329 174 24 34 chr3 173757459 173757757 -53766821 + LTR29 LTR ERV1 328 622 0 2335 95 0 3 chr3 173757821 173758125 -53766453 - AluY SINE Alu -8 303 1 7335 159 8 10 chr3 173758133 173760089 -53764489 + L1P4 LINE L1 3865 5819 -342 5970 136 20 31 chr3 173760214 173761531 -53763047 - L1 LINE L1 -3705 3860 2551 1129 169 6 6 chr3 173762062 173762245 -53762333 + AluSg/x SINE Alu 113 295 -17 352 217 43 11 chr3 173762254 173762346 -53762232 + L1MD2 LINE L1 6264 6358 -1 356 348 35 25 chr3 173762351 173762552 -53762026 - L2 LINE L2 -621 2693 2491 2045 122 28 0 chr3 173762566 173762852 -53761726 + AluSq SINE Alu 1 294 -19 9137 45 1 2 chr3 173963090 173964232 -53560346 - L1P LINE L1 -1458 4688 3548 7205 50 1 0 chr3 173964332 173965777 -53558801 + L1PA2 LINE L1 4709 6155 0 1340 116 2 1 chr3 173965777 173969190 -53555388 - ALR/Alpha Satellite centromeric 0 3416 1 10378 84 87 5 chr3 173969292 173970782 -53553796 - L1P LINE L1 -4533 1613 1 1389 142 3 1 chr3 173970783 173986056 -53538522 - ALR/Alpha Satellite centromeric 0 15301 1 2070 33 15 0 chr3 173986056 173986329 -53538249 - L1P LINE L1 -843 5303 5027 1190 158 4 3 chr3 173986433 173989930 -53534648 + ALR/Alpha Satellite centromeric 1 3501 0 1218 151 2 2 chr3 173990032 173995670 -53528908 - ALR/Alpha Satellite centromeric 0 5641 1 1231 138 4 0 chr3 173995770 174004629 -53519949 + ALR/Alpha Satellite centromeric 1 8893 -4 39889 57 25 2 chr3 174004632 174010641 -53513937 + L1PA3 LINE L1 1 6154 -1 1340 129 4 1 chr3 174010647 174018421 -53506157 + ALR/Alpha Satellite centromeric 1 7803 -48 1206 152 3 2 chr3 174018521 174026809 -53497769 + ALR/Alpha Satellite centromeric 1 8299 -58 1203 158 4 1 chr3 174026920 174034470 -53490108 - ALR/Alpha Satellite centromeric 0 7569 1 1141 162 4 2 chr3 174034484 174045222 -53479356 - ALR/Alpha Satellite centromeric -2 10752 1 28684 45 2 1 chr3 174045230 174049723 -53474855 - L1PA3 LINE L1 0 6155 1773 10656 44 1 3 chr3 174049823 174051915 -53472663 + L1PA3 LINE L1 4066 6155 0 1227 129 2 0 chr3 174051922 174053644 -53470934 + ALR/Alpha Satellite centromeric 1 1725 0 31839 56 50 2 chr3 174053645 174057789 -53466789 + L1P LINE L1 2 4343 -1803 1280 127 3 1 chr3 174057891 174075166 -53449412 + ALR/Alpha Satellite centromeric 1 17317 -28 3762 35 4 0 chr3 174075166 174075622 -53448956 - L1PA2 LINE L1 0 6155 5698 4520 31 0 0 chr3 174075623 174076200 -53448378 + L1P LINE L1 4727 5303 -843 1328 124 5 1 chr3 174076200 174084186 -53440392 + ALR/Alpha Satellite centromeric 1 8756 -7172 5635 41 0 0 chr3 174084186 174084863 -53439715 - L1PA3 LINE L1 0 6155 5479 1328 124 5 1 chr3 174084863 174091997 -53432581 + ALR/Alpha Satellite centromeric 8756 15860 -68 1168 124 4 1 chr3 174092100 174093314 -53431264 + ALR/Alpha Satellite centromeric 1 1218 -64 1153 127 8 1 chr3 174093414 174094987 -53429591 - ALR/Alpha Satellite centromeric 0 1584 1 465 103 0 0 chr3 174095243 174095311 -53429267 + (TA)n Simple_repeat Simple_repeat 2 69 0 576 330 3 3 chr3 174095819 174096134 -53428444 - L1M4 LINE L1 -3483 2663 2349 998 106 14 17 chr3 174096209 174096949 -53427629 + HSATII Satellite Satellite 1 738 -99 1005 62 0 50 chr3 174096976 174097155 -53427423 + HSATII Satellite Satellite 1 170 0 716 152 19 0 chr3 174097187 174097345 -53427233 + HSATII Satellite Satellite 10 170 0 1043 127 2 6 chr3 174097369 174097842 -53426736 + HSATII Satellite Satellite 1 471 -67 887 121 0 17 chr3 174097865 174098038 -53426540 + HSATII Satellite Satellite 1 170 0 225 314 64 16 chr3 174098064 174098252 -53426326 - SST1 Satellite centromeric -1366 197 1 233 226 16 0 chr3 174098988 174099050 -53425528 + GA-rich Low_complexity Low_complexity 1 63 0 321 109 0 0 chr3 174099050 174099105 -53425473 + (CA)n Simple_repeat Simple_repeat 2 56 0 668 249 58 62 chr3 174099109 174099608 -53424970 - SST1 Satellite centromeric -1 1562 1066 836 35 0 43 chr3 174099613 174099728 -53424850 + L1PA2 LINE L1 6046 6155 0 21 0 0 0 chr3 174099728 174099749 -53424829 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr3 174099769 174099804 -53424774 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 234 81 0 0 chr3 174100000 174100037 -53424541 + (CTGGGG)n Simple_repeat Simple_repeat 3 39 0 1176 137 3 0 chr3 174100164 174105786 -53418792 + ALR/Alpha Satellite centromeric 1 5635 -59 396 261 84 40 chr3 174105803 174106052 -53418526 - SST1 Satellite centromeric -1303 260 1 258 210 16 0 chr3 174106788 174106850 -53417728 + GA-rich Low_complexity Low_complexity 1 63 0 357 102 0 0 chr3 174106850 174106909 -53417669 + (CA)n Simple_repeat Simple_repeat 2 60 0 1379 265 52 73 chr3 174106913 174107407 -53417171 - SST1 Satellite centromeric -1 1562 1059 817 87 9 0 chr3 174107407 174107522 -53417056 + L1PA2 LINE L1 6035 6150 -5 1379 265 52 73 chr3 174107522 174107577 -53417001 - SST1 Satellite centromeric -504 1059 1004 342 0 0 0 chr3 174107577 174107615 -53416963 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 1379 265 52 73 chr3 174107615 174108188 -53416390 - SST1 Satellite centromeric -559 1004 462 552 212 44 22 chr3 174208278 174208415 -53316163 + MIR SINE MIR 65 204 -58 184 359 0 0 chr3 174208480 174208544 -53316034 - L2 LINE L2 -5 3308 3245 22 80 0 0 chr3 174209102 174209152 -53315426 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr3 174209294 174209317 -53315261 + AT_rich Low_complexity Low_complexity 1 23 0 313 270 38 79 chr3 174209413 174209731 -53314847 - L1MC5 LINE L1 -54 7907 7603 290 203 31 0 chr3 174209772 174209836 -53314742 - L1MC5 LINE L1 -559 7402 7337 297 237 106 45 chr3 174210042 174210240 -53314338 - L1MC5 LINE L1 -741 7220 7011 1900 129 3 24 chr3 174210334 174210662 -53313916 - AluSq SINE Alu 0 324 3 22 35 0 0 chr3 174210671 174210700 -53313878 + AT_rich Low_complexity Low_complexity 1 29 0 645 216 0 22 chr3 174210998 174211137 -53313441 + FLAM_A SINE Alu 6 141 -1 233 248 136 75 chr3 174212046 174212260 -53312318 + L1MC5 LINE L1 7687 7913 -48 4046 118 11 28 chr3 174212358 174212995 -53311583 + L1P3 LINE L1 2 627 -5834 21 0 0 0 chr3 174214014 174214035 -53310543 + AT_rich Low_complexity Low_complexity 1 21 0 2229 100 3 3 chr3 174214348 174214648 -53309930 + AluSx SINE Alu 1 300 -12 6235 179 8 4 chr3 174214929 174216925 -53307653 - L1PA15 LINE L1 -6 6159 4150 331 286 0 0 chr3 174217138 174217229 -53307349 - MIR SINE MIR -74 188 98 237 269 64 0 chr3 174218350 174218428 -53306150 + MIR3 SINE MIR 111 193 -15 1403 30 0 0 chr3 174221634 174221802 -53302776 - L1HS LINE L1 0 6155 5988 306 314 35 0 chr3 174221855 174221941 -53302637 + MARNA DNA Mariner 440 528 -58 228 284 102 17 chr3 174221991 174222167 -53302411 - AluSq SINE Alu -7 296 106 258 277 36 0 chr3 174222951 174223034 -53301544 + CT-rich Low_complexity Low_complexity 2 87 0 207 204 0 0 chr3 174223039 174223088 -53301490 + (TCCA)n Simple_repeat Simple_repeat 4 52 0 403 327 48 29 chr3 174223334 174223542 -53301036 - MIR SINE MIR -14 248 37 359 323 79 0 chr3 174224425 174224589 -53299989 + MIR SINE MIR 35 211 -51 1108 191 23 70 chr3 174225231 174225628 -53298950 - L1PA7 LINE L1 -8 6146 5769 965 206 9 46 chr3 174227350 174227569 -53297009 + MER20 DNA MER1_type 4 214 -5 200 225 0 0 chr3 174227778 174227818 -53296760 + (TATATG)n Simple_repeat Simple_repeat 1 40 0 26 0 0 0 chr3 174227886 174227912 -53296666 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 174230747 174230768 -53293810 + AT_rich Low_complexity Low_complexity 1 21 0 289 262 89 83 chr3 174231572 174231740 -53292838 - MLT1J LTR MaLR -111 400 232 210 189 0 19 chr3 174231851 174231904 -53292674 + T-rich Low_complexity Low_complexity 1 52 0 2125 125 3 0 chr3 174232252 174232548 -53292030 - AluSx SINE Alu -15 297 1 669 332 37 12 chr3 174232736 174232977 -53291601 - MIR SINE MIR -10 252 6 183 42 0 0 chr3 174234061 174234085 -53290493 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 332 341 36 14 chr3 174235559 174235697 -53288881 - MIR SINE MIR -115 147 7 22 35 0 0 chr3 174235952 174235981 -53288597 + AT_rich Low_complexity Low_complexity 1 29 0 2311 96 7 0 chr3 174236258 174236561 -53288017 - AluSg SINE Alu -5 305 1 21 57 0 0 chr3 174236830 174236865 -53287713 + AT_rich Low_complexity Low_complexity 1 35 0 2669 3 3 7 chr3 174237167 174237466 -53287112 + AluYa5 SINE Alu 5 302 -9 223 318 12 0 chr3 174237716 174237801 -53286777 + MIR SINE MIR 175 260 -2 2327 84 0 7 chr3 174238280 174238576 -53286002 - AluSg SINE Alu -16 294 1 398 324 87 23 chr3 174238612 174238831 -53285747 + MIR SINE MIR 17 249 -13 2233 107 3 3 chr3 174239630 174239928 -53284650 - AluSp SINE Alu -15 298 1 198 0 0 0 chr3 174241099 174241121 -53283457 + (CA)n Simple_repeat Simple_repeat 2 23 0 242 29 29 0 chr3 174241121 174241156 -53283422 + (TC)n Simple_repeat Simple_repeat 1 36 0 182 114 0 29 chr3 174242087 174242122 -53282456 + (TTC)n Simple_repeat Simple_repeat 2 35 0 1776 163 14 3 chr3 174242579 174242867 -53281711 - AluSx SINE Alu -18 294 4 189 272 65 65 chr3 174244550 174244642 -53279936 - MIR3 SINE MIR -14 194 103 198 0 0 0 chr3 174244866 174244888 -53279690 + (T)n Simple_repeat Simple_repeat 1 22 0 946 154 62 0 chr3 174244910 174245118 -53279460 + MER63 DNA MER1_type 44 264 -797 227 298 99 75 chr3 174245236 174245397 -53279181 + L2 LINE L2 3146 3310 -3 195 139 0 0 chr3 174245925 174245961 -53278617 + (T)n Simple_repeat Simple_repeat 1 36 0 21 57 0 0 chr3 174247496 174247531 -53277047 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr3 174248397 174248432 -53276146 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 174248676 174248699 -53275879 + AT_rich Low_complexity Low_complexity 1 23 0 1614 139 23 132 chr3 174248731 174249118 -53275460 - MER7A DNA MER2_type -2 344 2 619 229 179 6 chr3 174249687 174249866 -53274712 - MER63A DNA MER1_type 0 210 1 521 251 68 37 chr3 174249975 174250166 -53274412 + MIR SINE MIR 65 261 -1 184 359 0 0 chr3 174250176 174250240 -53274338 - L2 LINE L2 -5 3308 3245 22 80 0 0 chr3 174250798 174250848 -53273730 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr3 174250990 174251013 -53273565 + AT_rich Low_complexity Low_complexity 1 23 0 322 265 50 33 chr3 174251246 174251427 -53273151 - L1MC5 LINE L1 -175 7786 7603 290 203 31 0 chr3 174251468 174251532 -53273046 - L1MC5 LINE L1 -559 7402 7337 297 237 106 45 chr3 174251738 174251936 -53272642 - L1MC5 LINE L1 -741 7220 7011 2079 118 0 21 chr3 174252030 174252360 -53272218 - AluSq SINE Alu 0 324 1 255 321 0 36 chr3 174252496 174252580 -53271998 - L2 LINE L2 0 3272 3192 2096 141 3 3 chr3 174252588 174252900 -53271678 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 174253213 174253234 -53271344 + AT_rich Low_complexity Low_complexity 1 21 0 1172 184 8 83 chr3 174254639 174254905 -53269673 + AluJb SINE Alu 43 288 -24 381 67 76 9 chr3 174254905 174255010 -53269568 + (TA)n Simple_repeat Simple_repeat 1 112 0 830 226 75 0 chr3 174255446 174255645 -53268933 - AluJo SINE Alu -92 220 7 1699 103 130 40 chr3 174255871 174256172 -53268406 + MER44D DNA MER2_type 1 598 -11 203 239 15 0 chr3 174256321 174256388 -53268190 + CT-rich Low_complexity Low_complexity 1 68 0 264 59 0 0 chr3 174256437 174256471 -53268107 + (CA)n Simple_repeat Simple_repeat 2 35 0 225 0 0 0 chr3 174256943 174256968 -53267610 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 1969 106 29 7 chr3 174256968 174257243 -53267335 - AluSq SINE Alu -32 281 1 432 0 0 0 chr3 174257944 174257992 -53266586 + (TG)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr3 174258902 174258924 -53265654 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr3 174259625 174259655 -53264923 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 174262102 174262123 -53262455 + AT_rich Low_complexity Low_complexity 1 21 0 380 298 65 73 chr3 174262969 174263342 -53261236 - HAL1 LINE L1 -1241 3363 875 684 250 0 13 chr3 174263871 174264027 -53260551 - FRAM SINE Alu -22 154 1 101 17 0 0 chr3 174264182 174264297 -53260281 + AT_rich Low_complexity Low_complexity 1 115 0 389 184 158 80 chr3 174265132 174265296 -53259282 - MER5B DNA MER1_type -18 171 2 288 302 108 16 chr3 174265296 174265425 -53259153 + MIR SINE MIR 34 174 -88 183 80 0 0 chr3 174265427 174265452 -53259126 + (TTCA)n Simple_repeat Simple_repeat 1 25 0 500 161 0 0 chr3 174265459 174265540 -53259038 - L2 LINE L2 -8 3305 3225 193 224 15 60 chr3 174265609 174265676 -53258902 + MIR SINE MIR 173 236 -26 249 109 0 0 chr3 174266258 174266304 -53258274 + (TG)n Simple_repeat Simple_repeat 2 47 0 1097 209 38 0 chr3 174267594 174267804 -53256774 - MER20 DNA MER1_type -1 218 1 217 214 117 5 chr3 174269596 174269701 -53254877 + MIR SINE MIR 4 173 -89 189 0 0 0 chr3 174269740 174269761 -53254817 + (TTG)n Simple_repeat Simple_repeat 1 21 0 2659 20 0 0 chr3 174269944 174270243 -53254335 + AluY SINE Alu 1 299 -12 6291 177 8 4 chr3 174270524 174272522 -53252056 - L1PA13 LINE L1 -4 6159 4150 336 286 0 0 chr3 174272735 174272826 -53251752 - MIR SINE MIR -74 188 98 524 268 0 8 chr3 174273909 174274036 -53250542 + MIR3 SINE MIR 69 194 -14 200 221 26 26 chr3 174274105 174274182 -53250396 + (TA)n Simple_repeat Simple_repeat 2 78 0 1601 111 0 0 chr3 174274253 174274469 -53250109 - AluSg/x SINE Alu -16 296 81 182 278 56 19 chr3 174274779 174274833 -53249745 + L2 LINE L2 3217 3272 0 456 235 140 7 chr3 174275035 174275171 -53249407 - MER5A DNA MER1_type -1 188 35 24 0 0 0 chr3 174275565 174275589 -53248989 + AT_rich Low_complexity Low_complexity 1 24 0 804 190 7 0 chr3 174276188 174276325 -53248253 + AluJb SINE Alu 147 284 -28 182 216 0 0 chr3 174276642 174276679 -53247899 - MIR SINE MIR -70 192 156 2030 129 76 12 chr3 174276755 174277097 -53247481 - THE1B LTR MaLR 0 364 1 2196 109 0 0 chr3 174278273 174278566 -53246012 - AluSx SINE Alu -17 295 3 309 323 132 0 chr3 174278677 174278934 -53245644 + L1ME4a LINE L1 5706 5996 -125 205 156 0 0 chr3 174279666 174279698 -53244880 + (CA)n Simple_repeat Simple_repeat 1 32 0 213 39 0 0 chr3 174279958 174279984 -53244594 + (CA)n Simple_repeat Simple_repeat 1 26 0 184 241 69 17 chr3 174280068 174280126 -53244452 - MER5B DNA MER1_type -111 67 7 183 157 59 59 chr3 174280391 174280442 -53244136 + L2 LINE L2 1962 2012 -1302 1571 247 146 12 chr3 174280973 174281488 -53243090 - L1MD3 LINE L1 -11 7984 7401 22 0 0 0 chr3 174283318 174283340 -53241238 + AT_rich Low_complexity Low_complexity 1 22 0 238 109 36 36 chr3 174283387 174283442 -53241136 + T-rich Low_complexity Low_complexity 5 59 0 5247 197 34 6 chr3 174283584 174284783 -53239795 + L1 LINE L1 3412 4644 -1502 633 263 73 44 chr3 174285781 174285986 -53238592 + MIR SINE MIR 2 212 -50 715 274 11 11 chr3 174286195 174286374 -53238204 + MIR SINE MIR 84 262 0 189 94 0 0 chr3 174287295 174287327 -53237251 + (CTG)n Simple_repeat Simple_repeat 2 33 0 244 247 123 0 chr3 174288122 174288203 -53236375 - MER103 DNA DNA -68 98 8 345 291 29 19 chr3 174288266 174288369 -53236209 - L2 LINE L2 -11 3302 3199 21 0 0 0 chr3 174288623 174288644 -53235934 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 174288742 174288763 -53235815 + AT_rich Low_complexity Low_complexity 1 21 0 2028 131 6 26 chr3 174289613 174289926 -53234652 + AluSx SINE Alu 1 307 -5 232 283 19 19 chr3 174289950 174290056 -53234522 + CT-rich Low_complexity Low_complexity 5 110 0 21 36 0 0 chr3 174290139 174290167 -53234411 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 174291538 174291559 -53233019 + AT_rich Low_complexity Low_complexity 1 21 0 1246 178 68 65 chr3 174292302 174292594 -53231984 + AluJo SINE Alu 1 293 -19 464 200 181 19 chr3 174294268 174294423 -53230155 - MIR SINE MIR -57 205 26 412 291 75 45 chr3 174294545 174294744 -53229834 + MIR SINE MIR 57 261 -1 234 309 44 0 chr3 174294740 174294808 -53229770 - MIR SINE MIR -155 107 37 * 306 0 0 0 chr3 174294827 174294861 -53229717 + (CA)n Simple_repeat Simple_repeat 2 35 0 208 331 80 31 chr3 174295037 174295200 -53229378 + MIR SINE MIR 82 252 -10 306 339 71 8 chr3 174295681 174295808 -53228770 + L2 LINE L2 3136 3270 -2 854 239 57 14 chr3 174297992 174298201 -53226377 + MIR SINE MIR 4 221 -41 198 0 0 0 chr3 174298217 174298239 -53226339 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 24 0 0 0 chr3 174299148 174299172 -53225406 + AT_rich Low_complexity Low_complexity 1 24 0 819 156 0 0 chr3 174299172 174299294 -53225284 + FLAM_C SINE Alu 3 124 -19 21 0 0 0 chr3 174299548 174299569 -53225009 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 174299627 174299649 -53224929 + AT_rich Low_complexity Low_complexity 1 22 0 189 74 0 0 chr3 174302029 174302056 -53222522 + (TG)n Simple_repeat Simple_repeat 2 28 0 23 0 0 0 chr3 174303083 174303106 -53221472 + AT_rich Low_complexity Low_complexity 1 23 0 473 356 47 8 chr3 174303907 174304143 -53220435 + MIR SINE MIR 18 262 0 1277 209 4 8 chr3 174306480 174306743 -53217835 + AluJb SINE Alu 34 295 -17 197 297 27 40 chr3 174307044 174307118 -53217460 - MIR SINE MIR -97 165 93 402 41 0 0 chr3 174307155 174307204 -53217374 + U5 snRNA snRNA 3 51 -65 397 213 13 0 chr3 174307535 174307610 -53216968 + MIR SINE MIR 150 225 -37 21 0 0 0 chr3 174308500 174308521 -53216057 + AT_rich Low_complexity Low_complexity 1 21 0 1925 116 20 27 chr3 174308757 174309050 -53215528 - AluSg SINE Alu -19 291 1 239 0 0 31 chr3 174309123 174309155 -53215423 + (TG)n Simple_repeat Simple_repeat 2 32 0 204 336 51 67 chr3 174309533 174309698 -53214880 + MIR SINE MIR 40 199 -62 213 211 0 0 chr3 174310267 174310319 -53214259 + (TG)n Simple_repeat Simple_repeat 2 53 0 276 30 0 0 chr3 174311027 174311060 -53213518 + (TTA)n Simple_repeat Simple_repeat 2 34 0 869 110 0 0 chr3 174311064 174311182 -53213396 - FLAM_C SINE Alu -15 118 1 23 0 0 0 chr3 174311587 174311610 -53212968 + AT_rich Low_complexity Low_complexity 1 23 0 709 273 14 10 chr3 174311683 174311892 -53212686 + MER63A DNA MER1_type 1 210 0 347 232 146 13 chr3 174312961 174313112 -53211466 - L1MC4 LINE L1 -1 8041 7871 245 235 0 0 chr3 174313204 174313255 -53211323 - L2 LINE L2 0 3313 3263 1110 174 33 24 chr3 174314813 174315026 -53209552 - MER20 DNA MER1_type -1 218 4 24 67 0 0 chr3 174315446 174315491 -53209087 + AT_rich Low_complexity Low_complexity 1 45 0 322 275 102 84 chr3 174315868 174316035 -53208543 - MIR SINE MIR -12 250 81 232 325 12 12 chr3 174318288 174318368 -53206210 + MIR3 SINE MIR 108 187 -21 30215 117 16 59 chr3 174319315 174323589 -53200989 - L1PA7 LINE L1 -5 6149 2257 2109 122 7 0 chr3 174323589 174323884 -53200694 + AluSp SINE Alu 2 298 -15 30215 117 16 59 chr3 174323884 174326038 -53198540 - L1PA7 LINE L1 -3897 2257 12 233 248 136 75 chr3 174326144 174326358 -53198220 - L1MC5 LINE L1 -48 7913 7687 645 216 0 22 chr3 174327267 174327406 -53197172 - FLAM_A SINE Alu -1 141 6 22 35 0 0 chr3 174327704 174327733 -53196845 + AT_rich Low_complexity Low_complexity 1 29 0 713 108 10 0 chr3 174327742 174327844 -53196734 + AluJb SINE Alu 3 105 -207 365 197 0 14 chr3 174327844 174327915 -53196663 - L1 LINE L1 -2566 3580 3511 1001 180 6 16 chr3 174327922 174328105 -53196473 + AluJb SINE Alu 115 295 -17 270 176 0 0 chr3 174329054 174329105 -53195473 + (CA)n Simple_repeat Simple_repeat 2 52 0 330 351 122 5 chr3 174329659 174329864 -53194714 + MIR SINE MIR 34 262 0 1042 215 0 5 chr3 174330101 174330310 -53194268 - MER6B DNA MER2_type -1 209 2 1332 194 54 43 chr3 174330327 174330606 -53193972 + AluJo SINE Alu 1 282 -30 1559 220 3 0 chr3 174330988 174331288 -53193290 - AluJb SINE Alu -11 301 1 208 139 0 0 chr3 174333641 174333677 -53190901 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 23 0 0 0 chr3 174333726 174333749 -53190829 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr3 174338843 174338867 -53185711 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr3 174340029 174340061 -53184517 + AT_rich Low_complexity Low_complexity 1 32 0 236 300 0 12 chr3 174340061 174340141 -53184437 + (TATG)n Simple_repeat Simple_repeat 2 80 0 2182 98 0 39 chr3 174341369 174341674 -53182904 - AluSp SINE Alu -20 293 1 4409 153 78 8 chr3 174341676 174342140 -53182438 - Tigger3b DNA MER2_type -1804 1224 794 1876 91 25 0 chr3 174342140 174342405 -53182173 - AluSg SINE Alu 0 307 37 4409 153 78 8 chr3 174342405 174342775 -53181803 - Tigger3b DNA MER2_type -2234 794 331 835 296 36 3 chr3 174342780 174343114 -53181464 + L1ME3A LINE L1 5489 5833 -337 371 259 46 23 chr3 174343199 174343330 -53181248 + L1ME3A LINE L1 6007 6140 -30 387 152 30 0 chr3 174344618 174344684 -53179894 + MIR SINE MIR 195 262 0 2065 123 27 0 chr3 174345062 174345362 -53179216 - AluSx SINE Alu -2 310 3 267 270 45 45 chr3 174346172 174346261 -53178317 + MIR SINE MIR 68 156 -106 2169 137 27 37 chr3 174348178 174348520 -53176058 - L1PA16 LINE L1 0 6166 5827 2197 111 10 3 chr3 174348520 174348826 -53175752 - AluSg1 SINE Alu -1 308 1 2169 137 27 37 chr3 174348826 174348885 -53175693 - L1PA16 LINE L1 -339 5827 5769 220 320 13 0 chr3 174348901 174348976 -53175602 + (TA)n Simple_repeat Simple_repeat 1 76 0 13659 198 16 22 chr3 174348976 174352868 -53171710 - L1PA15-16 LINE L1 -970 5879 2037 2416 77 0 3 chr3 174352868 174353166 -53171412 - AluY SINE Alu -14 297 1 13659 198 16 22 chr3 174353166 174354346 -53170232 - L1PA15-16 LINE L1 -4812 2037 851 379 283 79 20 chr3 174354358 174354510 -53170068 - MIR SINE MIR -74 188 28 194 0 39 0 chr3 174354698 174354724 -53169854 + (TA)n Simple_repeat Simple_repeat 2 28 0 230 204 23 61 chr3 174354740 174354872 -53169706 + (TATAA)n Simple_repeat Simple_repeat 3 129 0 28 29 0 0 chr3 174355052 174355087 -53169491 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr3 174355979 174356000 -53168578 + AT_rich Low_complexity Low_complexity 1 21 0 1188 219 80 11 chr3 174356492 174356779 -53167799 + LTR52 LTR ERVL 15 321 -100 21 0 0 0 chr3 174356779 174356800 -53167778 + AT_rich Low_complexity Low_complexity 1 21 0 1962 113 11 7 chr3 174356800 174357084 -53167494 - AluSx SINE Alu -19 293 9 1806 108 65 29 chr3 174357085 174357392 -53167186 + THE1B LTR MaLR 1 318 -46 44 63 0 0 chr3 174359324 174359403 -53165175 + AT_rich Low_complexity Low_complexity 1 79 0 239 157 20 0 chr3 174360184 174360235 -53164343 + (TA)n Simple_repeat Simple_repeat 2 53 0 389 248 54 65 chr3 174360615 174360810 -53163768 - MIR3 SINE MIR -55 207 8 22 0 0 0 chr3 174361417 174361439 -53163139 + AT_rich Low_complexity Low_complexity 1 22 0 1165 199 18 5 chr3 174361867 174362088 -53162490 - MER58A DNA MER1_type 0 224 1 1692 173 11 7 chr3 174362206 174362514 -53162064 + AluJb SINE Alu 1 309 0 182 216 0 0 chr3 174362806 174362843 -53161735 - MIR SINE MIR -70 192 156 2051 129 76 12 chr3 174362919 174363261 -53161317 - THE1B LTR MaLR 0 364 1 2251 131 0 3 chr3 174364292 174364605 -53159973 + AluSq SINE Alu 1 312 -1 1535 173 7 21 chr3 174365015 174365304 -53159274 + AluJo SINE Alu 7 291 -21 25 0 0 0 chr3 174365304 174365329 -53159249 + AT_rich Low_complexity Low_complexity 1 25 0 328 20 41 0 chr3 174366359 174366408 -53158170 + (TA)n Simple_repeat Simple_repeat 1 51 0 223 317 24 12 chr3 174366448 174366530 -53158048 - MIR SINE MIR -73 135 53 1253 214 36 84 chr3 174366671 174367064 -53157514 + MLT1A2 LTR MaLR 1 374 0 344 285 33 53 chr3 174367201 174367352 -53157226 + MIR SINE MIR 49 196 -66 417 333 131 28 chr3 174367545 174368004 -53156574 + L1MC4a LINE L1 5321 5826 -1982 32 26 0 0 chr3 174368179 174368218 -53156360 + AT_rich Low_complexity Low_complexity 1 39 0 2148 121 0 16 chr3 174368927 174369064 -53155514 + AluSx SINE Alu 1 139 -173 2256 103 0 7 chr3 174369064 174369364 -53155214 + AluSc SINE Alu 1 298 -11 2148 121 0 16 chr3 174369364 174369532 -53155046 + AluSx SINE Alu 139 301 -11 1456 145 0 4 chr3 174369533 174369761 -53154817 - MER65A LTR ERV1 -41 404 178 310 281 0 22 chr3 174369770 174369859 -53154719 - L1MC4 LINE L1 -1342 6700 6614 312 120 0 0 chr3 174369864 174369914 -53154664 + (CA)n Simple_repeat Simple_repeat 1 50 0 594 149 128 28 chr3 174369932 174370073 -53154505 - MER65B LTR ERV1 -375 156 2 628 251 51 89 chr3 174370667 174371178 -53153400 + L1ME LINE L1 227 721 -5349 512 203 51 0 chr3 174371180 174371318 -53153260 - L1ME LINE L1 -3350 2730 2586 493 295 48 50 chr3 174371318 174371769 -53152809 - L1ME LINE L1 -5409 661 258 316 395 5 26 chr3 174371907 174372097 -53152481 - L1ME LINE L1 -5628 442 257 23 0 0 0 chr3 174372224 174372247 -53152331 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr3 174375584 174375618 -53148960 + AT_rich Low_complexity Low_complexity 1 34 0 1910 118 150 12 chr3 174375635 174375981 -53148597 + MSTA LTR MaLR 1 394 -34 708 146 0 24 chr3 174375982 174376105 -53148473 - AluSg/x SINE Alu -6 303 184 2809 139 107 160 chr3 174376105 174376992 -53147586 - pTR5 LTR ERV1 -3 2435 1596 313 98 0 0 chr3 174376995 174377036 -53147542 - AluSp/q SINE Alu -36 267 227 2319 128 26 0 chr3 174377036 174377427 -53147151 - L1M1 LINE L1 -5079 2486 2086 19966 169 36 15 chr3 174377461 174381562 -53143016 - L1 LINE L1 -3380 4185 2 228 283 160 78 chr3 174381576 174381795 -53142783 - MIR SINE MIR -5 257 21 277 260 90 20 chr3 174381833 174381933 -53142645 + MIR SINE MIR 20 126 -82 566 247 207 52 chr3 174382923 174383324 -53141254 - MLT1J LTR MaLR -19 492 30 399 330 108 11 chr3 174383878 174384063 -53140515 - L3 LINE CR1 -1 1576 1374 1261 289 148 22 chr3 174384233 174385007 -53139571 - L2 LINE L2 -170 3143 2267 328 299 42 47 chr3 174385244 174385566 -53139012 + LTR16A LTR ERVL 61 444 -6 458 304 115 42 chr3 174387097 174387314 -53137264 + MIR SINE MIR 16 248 -14 1358 194 0 89 chr3 174387605 174387930 -53136648 + AluJb SINE Alu 1 296 -16 1516 103 0 10 chr3 174388174 174388452 -53136126 + AluSg/x SINE Alu 82 357 0 25 51 0 0 chr3 174388984 174389023 -53135555 + AT_rich Low_complexity Low_complexity 1 39 0 1860 169 0 7 chr3 174389336 174389637 -53134941 + AluJb SINE Alu 1 299 -13 302 254 0 0 chr3 174389726 174389789 -53134789 + MIR SINE MIR 190 252 -10 1872 152 7 10 chr3 174389820 174390130 -53134448 + AluSg SINE Alu 1 309 -1 278 279 126 75 chr3 174390153 174390407 -53134171 - MLT1J LTR MaLR -19 492 226 390 91 0 0 chr3 174390439 174390494 -53134084 + (CA)n Simple_repeat Simple_repeat 2 56 0 1673 205 32 47 chr3 174390844 174391287 -53133291 - MER63B DNA MER1_type 0 436 1 24 0 0 0 chr3 174391836 174391860 -53132718 + AT_rich Low_complexity Low_complexity 1 24 0 1259 275 104 14 chr3 174391963 174392407 -53132171 + L1MC4a LINE L1 5477 5960 -1848 237 289 145 20 chr3 174392688 174392840 -53131738 - LTR33 LTR ERVL -28 493 323 510 279 116 19 chr3 174392874 174393089 -53131489 - LTR33 LTR ERVL -276 245 10 1265 228 22 77 chr3 174393189 174393699 -53130879 + LTR55 LTR ERV 50 531 -17 270 0 0 0 chr3 174394049 174394079 -53130499 + (A)n Simple_repeat Simple_repeat 1 30 0 364 314 43 43 chr3 174394323 174394530 -53130048 + L1MEd LINE L1 247 453 -5666 832 316 19 13 chr3 174394535 174394852 -53129726 + L1MEd LINE L1 497 815 -5304 319 218 59 30 chr3 174395355 174395456 -53129122 + L1MC4a LINE L1 5827 5930 -1878 521 328 76 5 chr3 174395757 174395955 -53128623 + MIR SINE MIR 45 256 -6 1764 224 59 36 chr3 174396873 174397404 -53127174 - MLT1E1 LTR MaLR -2 652 1 1996 182 75 8 chr3 174397701 174398102 -53126476 - MSTA LTR MaLR 0 428 1 249 192 19 19 chr3 174398304 174398356 -53126222 - MIR SINE MIR -163 99 48 344 298 11 0 chr3 174398436 174398530 -53126048 - L2 LINE L2 -10 3262 3168 404 108 0 54 chr3 174398621 174398750 -53125828 + (TAA)n Simple_repeat Simple_repeat 1 122 0 23 0 0 0 chr3 174398800 174398823 -53125755 + AT_rich Low_complexity Low_complexity 1 23 0 275 49 24 0 chr3 174399085 174399126 -53125452 + (TAAA)n Simple_repeat Simple_repeat 1 42 0 1676 188 26 6 chr3 174399260 174399600 -53124978 + MER7A DNA MER2_type 2 346 0 21 36 0 0 chr3 174400387 174400415 -53124163 + AT_rich Low_complexity Low_complexity 1 28 0 340 255 46 34 chr3 174401414 174401578 -53123000 + MLT1I LTR MaLR 71 236 -173 263 119 0 51 chr3 174401591 174401650 -53122928 + (TATAA)n Simple_repeat Simple_repeat 4 59 0 23 33 0 0 chr3 174401689 174401719 -53122859 + AT_rich Low_complexity Low_complexity 1 30 0 213 196 0 0 chr3 174402648 174402699 -53121879 + (TGAA)n Simple_repeat Simple_repeat 3 53 0 304 276 37 30 chr3 174402857 174402991 -53121587 - L1M4 LINE L1 -1712 4434 4300 13257 142 60 16 chr3 174403003 174403323 -53121255 - Tigger1 DNA MER2_type 0 2418 2113 2513 40 0 10 chr3 174403323 174403624 -53120954 - AluY SINE Alu -13 298 1 13257 142 60 16 chr3 174403624 174405013 -53119565 - Tigger1 DNA MER2_type -305 2113 580 2123 119 3 3 chr3 174405013 174405316 -53119262 - AluSx SINE Alu -5 307 5 13257 142 60 16 chr3 174405316 174405923 -53118655 - Tigger1 DNA MER2_type -1838 580 1 21 36 0 0 chr3 174405946 174405974 -53118604 + AT_rich Low_complexity Low_complexity 1 28 0 247 323 10 21 chr3 174406123 174406219 -53118359 + L1PB4 LINE L1 14 108 -6754 11488 166 16 6 chr3 174406228 174409155 -53115423 - L1PA13 LINE L1 -4 6810 3830 301 234 11 75 chr3 174409437 174409531 -53115047 - L1MC4 LINE L1 -1323 6719 6632 11147 207 57 21 chr3 174409903 174413609 -53110969 - L1PA13 LINE L1 -2950 3847 1 10151 218 31 65 chr3 174413617 174415643 -53108935 + L1PB4 LINE L1 69 2162 -4710 1945 149 0 29 chr3 174415643 174415959 -53108619 - AluJb SINE Alu -3 309 3 10151 218 31 65 chr3 174415959 174417122 -53107456 + L1PB4 LINE L1 2162 3363 -3509 1626 176 42 0 chr3 174417122 174417406 -53107172 - AluSx SINE Alu -16 296 1 10151 218 31 65 chr3 174417406 174420807 -53103771 + L1PB4 LINE L1 3363 6587 -285 2500 57 0 0 chr3 174420809 174421106 -53103472 - AluY SINE Alu -14 297 1 306 0 0 0 chr3 174421466 174421500 -53103078 + (T)n Simple_repeat Simple_repeat 1 34 0 3043 93 13 18 chr3 174422101 174422553 -53102025 - L1PA13 LINE L1 -4 6159 5710 325 320 127 28 chr3 174422833 174423220 -53101358 + L1M4 LINE L1 2350 2774 -3372 25 31 0 0 chr3 174423692 174423724 -53100854 + AT_rich Low_complexity Low_complexity 1 32 0 1161 201 90 38 chr3 174425009 174425298 -53099280 + MER2 DNA MER2_type 42 345 0 330 107 0 0 chr3 174425463 174425519 -53099059 - L1MA5A LINE L1 0 6297 6242 1323 250 26 19 chr3 174425729 174426145 -53098433 - L1M4 LINE L1 -921 5225 4807 537 16 0 0 chr3 174426253 174426315 -53098263 + (CA)n Simple_repeat Simple_repeat 1 62 0 259 296 92 5 chr3 174426772 174426968 -53097610 + L1M4 LINE L1 4598 4810 -1336 565 343 29 5 chr3 174427152 174427362 -53097216 + ERVL LTR ERVL 2039 2253 -3511 366 256 145 19 chr3 174427373 174427580 -53096998 + ERVL LTR ERVL 2433 2665 -2820 2120 226 60 50 chr3 174427589 174428205 -53096373 + MER92B LTR ERV1 1 622 -14 256 377 37 26 chr3 174428209 174428400 -53096178 + ERVL LTR ERVL 3992 4184 -1580 * 793 342 47 13 chr3 174428394 174428777 -53095801 + ERVL LTR ERVL 4102 4497 -988 403 250 22 11 chr3 174428965 174429057 -53095521 - MER81 DNA DNA 0 114 22 472 232 119 20 chr3 174429340 174429491 -53095087 - MIR SINE MIR -95 167 2 908 197 72 0 chr3 174429806 174429999 -53094579 + MER3 DNA MER1_type 3 209 0 279 0 0 0 chr3 174431696 174431727 -53092851 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 1808 182 20 17 chr3 174432885 174433243 -53091335 - MLT1A1 LTR MaLR -6 359 1 742 257 104 16 chr3 174433460 174433709 -53090869 - Charlie8 DNA MER1_type -2145 272 2 671 110 0 0 chr3 174434292 174434383 -53090195 - AluY SINE Alu -16 295 205 1866 192 56 14 chr3 174434383 174434883 -53089695 + pTR5 LTR ERV1 743 1263 -1175 953 65 138 0 chr3 174434888 174435026 -53089552 + pTR5 LTR ERV1 1869 2025 -413 351 230 10 10 chr3 174435026 174435126 -53089452 + LTR30 LTR ERV1 544 643 -79 28955 86 37 16 chr3 174435126 174439471 -53085107 + HERV9 LTR ERV1 1 4091 -1935 361 125 0 0 chr3 174439467 174439523 -53085055 + pTR5 LTR ERV1 80 135 -2303 * 332 347 130 33 chr3 174439540 174439840 -53084738 - L3 LINE CR1 -1214 363 35 1882 117 0 89 chr3 174440091 174440407 -53084171 - AluSc SINE Alu -21 288 1 327 65 0 0 chr3 174440817 174440863 -53083715 + (CA)n Simple_repeat Simple_repeat 2 47 0 1049 153 0 18 chr3 174441003 174441166 -53083412 + AluSx SINE Alu 1 160 -152 969 196 107 51 chr3 174441169 174441505 -53083073 + L1M3 LINE L1 3662 4016 -2130 * 3360 209 38 47 chr3 174441503 174442556 -53082022 + L1M3 LINE L1 4423 5465 -715 231 170 0 0 chr3 174442889 174442936 -53081642 + (TTCA)n Simple_repeat Simple_repeat 3 49 0 343 248 18 55 chr3 174442947 174443056 -53081522 - L2 LINE L2 -10 3303 3199 1390 191 8 0 chr3 174443921 174444162 -53080416 + AluJo SINE Alu 3 245 -67 410 159 0 0 chr3 174444234 174444303 -53080275 + AluJo SINE Alu 235 303 -9 563 230 0 8 chr3 174445497 174445623 -53078955 - FLAM_A SINE Alu -8 125 1 787 300 200 13 chr3 174445632 174446157 -53078421 + L2 LINE L2 2695 3309 -4 22 56 0 0 chr3 174447820 174447856 -53076722 + AT_rich Low_complexity Low_complexity 1 36 0 305 313 149 0 chr3 174448269 174448403 -53076175 - MIR SINE MIR -92 170 17 25 0 0 0 chr3 174448511 174448536 -53076042 + AT_rich Low_complexity Low_complexity 1 25 0 29 0 0 0 chr3 174450042 174450071 -53074507 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 174451574 174451595 -53072983 + AT_rich Low_complexity Low_complexity 1 21 0 1358 303 48 50 chr3 174451606 174452249 -53072329 + L1MEc LINE L1 24 667 -5446 1630 184 29 4 chr3 174452249 174452521 -53072057 + AluJb SINE Alu 1 279 -33 227 30 0 30 chr3 174452524 174452557 -53072021 + (CAAAA)n Simple_repeat Simple_repeat 2 33 0 1358 303 48 50 chr3 174452557 174452772 -53071806 + L1MEc LINE L1 669 705 -5408 272 333 28 44 chr3 174452812 174452992 -53071586 - MIR SINE MIR -50 212 36 247 306 0 0 chr3 174453109 174453171 -53071407 + (TG)n Simple_repeat Simple_repeat 1 62 0 24 32 0 0 chr3 174453888 174453919 -53070659 + AT_rich Low_complexity Low_complexity 1 31 0 364 210 20 60 chr3 174453979 174454079 -53070499 - MER103 DNA DNA -11 155 60 225 313 122 27 chr3 174454260 174454407 -53070171 + MIR SINE MIR 98 258 -4 2266 120 0 3 chr3 174454552 174454861 -53069717 + AluSx SINE Alu 3 310 -2 250 405 53 4 chr3 174455478 174455705 -53068873 + MIR SINE MIR 21 258 -4 919 161 0 0 chr3 174456387 174456530 -53068048 + FLAM_C SINE Alu 1 143 0 333 100 0 0 chr3 174456586 174456636 -53067942 + (TC)n Simple_repeat Simple_repeat 2 51 0 228 35 0 0 chr3 174456636 174456665 -53067913 + (CA)n Simple_repeat Simple_repeat 1 29 0 298 263 68 30 chr3 174456668 174456801 -53067777 + MER112 DNA MER1_type 74 211 -49 305 291 58 10 chr3 174457825 174457928 -53066650 - MIR3 SINE MIR -10 198 91 841 257 5 0 chr3 174458427 174458614 -53065964 + MER5A DNA MER1_type 1 188 -1 181 370 97 19 chr3 174459719 174459873 -53064705 - L2 LINE L2 0 3272 3107 1383 171 0 13 chr3 174460896 174461124 -53063454 - AluJb SINE Alu -5 307 83 482 323 140 0 chr3 174461583 174461747 -53062831 - MER91A DNA MER1_type -3 193 7 256 290 122 0 chr3 174461752 174461859 -53062719 - MIR SINE MIR -97 165 46 297 313 18 18 chr3 174461885 174461997 -53062581 + MIR SINE MIR 124 235 -27 333 314 56 49 chr3 174462874 174463005 -53061573 - MIR SINE MIR -9 253 94 216 0 0 0 chr3 174463005 174463029 -53061549 + (A)n Simple_repeat Simple_repeat 1 24 0 333 314 56 49 chr3 174463029 174463122 -53061456 - MIR SINE MIR -168 94 3 627 249 75 0 chr3 174463197 174463370 -53061208 - MIR SINE MIR -13 249 64 2069 123 3 0 chr3 174463511 174463796 -53060782 + AluSx SINE Alu 10 295 -17 1822 260 60 97 chr3 174463877 174466142 -53058436 + L1MC5 LINE L1 5699 7894 -67 184 314 27 80 chr3 174466569 174466757 -53057821 - L2 LINE L2 0 3272 3095 969 287 122 33 chr3 174467147 174467609 -53056969 - L2 LINE L2 0 3313 2777 320 296 30 30 chr3 174467609 174467741 -53056837 - MER94 DNA DNA -2 132 1 969 287 122 33 chr3 174467741 174467838 -53056740 - L2 LINE L2 -536 2777 2690 282 254 17 23 chr3 174468438 174468611 -53055967 + GA-rich Low_complexity Low_complexity 3 174 0 383 257 123 95 chr3 174468646 174469134 -53055444 - LTR67 LTR ERVL 0 557 3 1501 194 0 47 chr3 174469210 174469509 -53055069 + AluJo SINE Alu 1 285 -27 36 0 0 0 chr3 174469509 174469545 -53055033 + AT_rich Low_complexity Low_complexity 1 36 0 638 25 12 0 chr3 174469550 174469630 -53054948 + (GAAA)n Simple_repeat Simple_repeat 4 84 0 2950 76 100 5 chr3 174470687 174471096 -53053482 + LTR7 LTR ERV1 1 448 -2 9913 172 33 28 chr3 174471098 174473722 -53050856 + HERVH LTR ERV1 1 2299 -4361 316 217 17 70 chr3 174473901 174474016 -53050562 + L1M4 LINE L1 3080 3188 -2958 4862 128 0 31 chr3 174474019 174474879 -53049699 + HERVH LTR ERV1 2163 2995 -4718 889 147 7 0 chr3 174474858 174475008 -53049570 + HERVH LTR ERV1 3140 3290 -4423 * 3748 83 0 6 chr3 174474998 174475503 -53049075 + HERVH LTR ERV1 3492 3993 -3720 * 4211 156 6 5 chr3 174475499 174476168 -53048410 + HERVH LTR ERV1 4480 5149 -2564 1425 130 19 0 chr3 174476169 174476385 -53048193 + HERVH LTR ERV1 5600 5819 -1894 * 2232 114 56 13 chr3 174476383 174476759 -53047819 + HERVH LTR ERV1 7322 7713 0 3030 68 98 5 chr3 174476759 174477169 -53047409 + LTR7 LTR ERV1 1 448 -2 2445 65 3 0 chr3 174477335 174477628 -53046950 - AluY SINE Alu -17 294 1 5118 88 50 5 chr3 174478278 174478939 -53045639 - LTR8 LTR ERV1 0 691 1 323 121 17 0 chr3 174479008 174479066 -53045512 + GA-rich Low_complexity Low_complexity 2 60 0 269 83 125 0 chr3 174479498 174479546 -53045032 - L1MB1 LINE L1 -282 5907 5854 811 244 68 91 chr3 174480137 174480575 -53044003 + Charlie8 DNA MER1_type 63 490 -1927 2108 182 55 59 chr3 174481301 174481813 -53042765 + LTR54 LTR ERV1 1 510 0 2021 109 10 23 chr3 174481870 174482173 -53042405 - AluSx SINE Alu -13 299 1 456 301 6 60 chr3 174533053 174533219 -52991359 + L2 LINE L2 3116 3272 0 197 234 21 0 chr3 174533483 174533530 -52991048 - MIR3 SINE MIR -11 197 150 344 291 132 45 chr3 174533893 174534158 -52990420 - L3 LINE CR1 -122 1455 1168 1663 183 55 6 chr3 174535409 174535737 -52988841 - MER2 DNA MER2_type 0 344 1 34 24 0 0 chr3 174535928 174535969 -52988609 + AT_rich Low_complexity Low_complexity 1 41 0 1845 145 0 24 chr3 174535971 174536267 -52988311 - AluJo SINE Alu -23 289 1 1038 134 41 0 chr3 174536278 174536450 -52988128 - L1MC1 LINE L1 0 6333 6155 2021 132 3 3 chr3 174537148 174537443 -52987135 - AluJo SINE Alu -9 303 9 366 291 117 39 chr3 174537451 174537630 -52986948 + MIR SINE MIR 51 243 -19 752 251 10 34 chr3 174537658 174537865 -52986713 + MIR SINE MIR 61 262 0 27 29 0 0 chr3 174537996 174538030 -52986548 + AT_rich Low_complexity Low_complexity 1 34 0 232 196 22 0 chr3 174538085 174538131 -52986447 + MIR SINE MIR 216 262 0 31 26 0 0 chr3 174538261 174538299 -52986279 + AT_rich Low_complexity Low_complexity 1 38 0 377 298 32 16 chr3 174538533 174538657 -52985921 + MIR SINE MIR 16 141 -67 725 315 50 4 chr3 174538753 174538991 -52985587 + MIR SINE MIR 14 262 0 24 32 0 0 chr3 174539440 174539471 -52985107 + AT_rich Low_complexity Low_complexity 1 31 0 341 22 22 0 chr3 174540720 174540766 -52983812 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 9395 135 12 2 chr3 174540766 174543148 -52981430 - L1PA11 LINE L1 -24 6150 3742 356 331 65 23 chr3 174543227 174543322 -52981256 - HAL1 LINE L1 -1464 1043 953 2118 161 30 57 chr3 174543322 174543782 -52980796 - L1MB1 LINE L1 0 6168 5721 356 331 65 23 chr3 174543782 174543946 -52980632 - HAL1 LINE L1 -1554 953 773 2140 129 0 0 chr3 174544875 174545185 -52979393 - AluSx SINE Alu -2 310 1 29 84 0 0 chr3 174546014 174546085 -52978493 + AT_rich Low_complexity Low_complexity 1 71 0 24 91 0 0 chr3 174546241 174546307 -52978271 + AT_rich Low_complexity Low_complexity 1 66 0 1141 123 38 142 chr3 174546543 174546860 -52977718 - L1MA9 LINE L1 0 6312 6029 1020 157 174 38 chr3 174548607 174548843 -52975735 - AluJb SINE Alu -1 311 44 1798 179 18 12 chr3 174549725 174550065 -52974513 - MER61A LTR ERV1 0 343 2 24 77 0 0 chr3 174550073 174550125 -52974453 + AT_rich Low_complexity Low_complexity 1 52 0 528 250 200 28 chr3 174550322 174550502 -52974076 + MIR SINE MIR 2 212 -50 210 330 161 9 chr3 174550575 174550687 -52973891 + L2 LINE L2 3184 3312 -1 26 30 0 0 chr3 174550777 174550810 -52973768 + AT_rich Low_complexity Low_complexity 1 33 0 2225 119 135 8 chr3 174552110 174552488 -52972090 + MSTA LTR MaLR 3 428 0 320 218 21 49 chr3 174552580 174552722 -52971856 + (TA)n Simple_repeat Simple_repeat 2 139 0 3683 191 68 44 chr3 174552723 174553877 -52970701 + L1MB7 LINE L1 5016 6183 -1 2344 186 13 2 chr3 174553925 174554381 -52970197 - MER65C LTR ERV1 0 461 1 1148 198 65 44 chr3 174554504 174554566 -52970012 - AluJo SINE Alu -13 299 240 3052 102 9 0 chr3 174554566 174554989 -52969589 - MSTA LTR MaLR 0 428 2 1148 198 65 44 chr3 174554989 174555219 -52969359 - AluJo SINE Alu -72 240 1 1976 102 0 4 chr3 174555241 174555515 -52969063 - AluSg SINE Alu -2 308 36 674 307 20 0 chr3 174555774 174555976 -52968602 + MIR SINE MIR 57 262 0 196 310 11 81 chr3 174557609 174557696 -52966882 - L2 LINE L2 -25 3288 3208 1591 134 32 139 chr3 174557897 174558173 -52966405 + MLT2D LTR ERVL 1 220 -194 903 137 0 0 chr3 174558173 174558304 -52966274 - FLAM_C SINE Alu -1 132 2 1591 134 32 139 chr3 174558304 174558437 -52966141 + MLT2D LTR ERVL 220 366 -48 208 77 51 0 chr3 174558438 174558477 -52966101 + CT-rich Low_complexity Low_complexity 1 41 0 21 0 0 0 chr3 174558553 174558574 -52966004 + AT_rich Low_complexity Low_complexity 1 21 0 416 228 35 18 chr3 174558586 174558700 -52965878 - L1ME LINE L1 -424 5697 5582 413 237 140 0 chr3 174559213 174559327 -52965251 - L2 LINE L2 -4 3309 3180 21 36 0 0 chr3 174559628 174559656 -52964922 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr3 174559742 174559778 -52964800 + AT_rich Low_complexity Low_complexity 1 36 0 356 22 0 0 chr3 174560423 174560468 -52964110 + AluSp/q SINE Alu 186 230 -73 567 263 93 64 chr3 174560478 174560855 -52963723 + L2 LINE L2 2925 3312 -1 23 54 0 0 chr3 174561198 174561235 -52963343 + AT_rich Low_complexity Low_complexity 1 37 0 341 343 24 24 chr3 174561781 174561991 -52962587 + MER102a DNA MER1_type 112 321 -9 405 0 0 0 chr3 174563506 174563551 -52961027 + (TA)n Simple_repeat Simple_repeat 2 46 0 477 346 91 8 chr3 174563641 174563895 -52960683 + L2 LINE L2 2039 2313 -1001 451 330 28 33 chr3 174564077 174564292 -52960286 + L2 LINE L2 2359 2572 -742 1858 167 54 51 chr3 174564329 174564718 -52959860 + MLT1B LTR MaLR 1 390 0 233 194 0 15 chr3 174564766 174564833 -52959745 + CT-rich Low_complexity Low_complexity 1 66 0 206 178 22 0 chr3 174564852 174564897 -52959681 + A-rich Low_complexity Low_complexity 6 51 0 183 80 0 0 chr3 174565538 174565563 -52959015 + (T)n Simple_repeat Simple_repeat 1 25 0 22 0 0 0 chr3 174566302 174566324 -52958254 + AT_rich Low_complexity Low_complexity 1 22 0 231 114 0 0 chr3 174566797 174566832 -52957746 + MER3 DNA MER1_type 15 49 -160 327 182 0 91 chr3 174566832 174566931 -52957647 + L1ME1 LINE L1 6058 6147 -19 200 296 84 0 chr3 174567326 174567397 -52957181 + MIR SINE MIR 122 198 -64 393 236 73 18 chr3 174567704 174567814 -52956764 + L2 LINE L2 3197 3312 -1 280 243 137 16 chr3 174568095 174568350 -52956228 - L1ME4a LINE L1 -65 6056 5771 663 270 62 40 chr3 174568800 174569026 -52955552 - MIR SINE MIR 0 262 32 8630 104 38 6 chr3 174569031 174570278 -52954300 + HSMAR1 DNA Mariner 1 1287 0 627 391 75 18 chr3 174570392 174571174 -52953404 + L2 LINE L2 1715 2541 -773 231 330 78 9 chr3 174572279 174572394 -52952184 + L2 LINE L2 3173 3295 -18 1151 196 50 9 chr3 174572855 174573075 -52951503 + AluJb SINE Alu 1 229 -83 890 370 93 11 chr3 174573383 174574019 -52950559 + L2 LINE L2 2256 2943 -371 198 0 0 0 chr3 174574196 174574218 -52950360 + (TG)n Simple_repeat Simple_repeat 2 23 0 224 305 34 0 chr3 174574260 174574319 -52950259 + MIR SINE MIR 2 62 -200 4734 231 75 62 chr3 174574478 174576202 -52948376 - MER52A LTR ERV1 0 1755 10 456 238 56 35 chr3 174576211 174576354 -52948224 + MIR SINE MIR 61 206 -56 570 354 58 26 chr3 174576389 174576992 -52947586 - ERVL LTR ERVL -3559 2205 1552 22 0 0 0 chr3 174577523 174577545 -52947033 + AT_rich Low_complexity Low_complexity 1 22 0 2272 113 0 3 chr3 174578183 174578494 -52946084 - AluSg SINE Alu 0 310 1 448 314 63 42 chr3 174578524 174578763 -52945815 - MIR SINE MIR 0 262 19 1777 140 61 0 chr3 174579275 174579568 -52945010 + AluJo SINE Alu 1 311 -1 283 143 20 0 chr3 174579908 174579957 -52944621 + LTR16A LTR ERVL 1 50 -400 23 0 0 0 chr3 174580644 174580667 -52943911 + AT_rich Low_complexity Low_complexity 1 23 0 546 285 116 8 chr3 174581941 174582245 -52942333 + LTR16A LTR ERVL 1 374 -76 21 71 0 0 chr3 174583836 174583878 -52940700 + AT_rich Low_complexity Low_complexity 1 42 0 253 208 94 0 chr3 174584220 174584273 -52940305 + L2 LINE L2 3254 3311 -2 1526 203 10 10 chr3 174584357 174584657 -52939921 + AluJo SINE Alu 1 300 -12 21 57 0 0 chr3 174585375 174585410 -52939168 + AT_rich Low_complexity Low_complexity 1 35 0 572 38 0 12 chr3 174585462 174585542 -52939036 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 397 145 16 0 chr3 174586063 174586125 -52938453 - MLT1B LTR MaLR -298 92 30 1953 157 43 0 chr3 174586150 174586495 -52938083 + MLT1B LTR MaLR 30 389 -1 2709 216 68 35 chr3 174587706 174588880 -52935698 + L1ME LINE L1 4357 5566 -600 435 178 0 0 chr3 174588953 174589054 -52935524 + (TA)n Simple_repeat Simple_repeat 1 101 0 219 36 0 0 chr3 174589054 174589082 -52935496 + (GA)n Simple_repeat Simple_repeat 2 29 0 3879 177 20 3 chr3 174589104 174589764 -52934814 - MER44D DNA MER2_type 0 705 35 1589 262 111 72 chr3 174590862 174591716 -52932862 + MER45C DNA AcHobo 1 951 -2 25 51 0 0 chr3 174592760 174592799 -52931779 + AT_rich Low_complexity Low_complexity 1 39 0 465 221 31 133 chr3 174593071 174593266 -52931312 + MIR SINE MIR 78 252 -10 261 83 0 0 chr3 174593589 174593625 -52930953 + (CA)n Simple_repeat Simple_repeat 2 37 0 755 268 45 22 chr3 174595161 174595217 -52929361 + LTR37A LTR ERV1 81 134 -292 2141 123 0 7 chr3 174595217 174595517 -52929061 + AluSx SINE Alu 1 298 -14 755 268 45 22 chr3 174595517 174595774 -52928804 + LTR37A LTR ERV1 134 401 -25 395 336 47 0 chr3 174596304 174596453 -52928125 - MIR SINE MIR -55 207 52 276 304 73 59 chr3 174596626 174596899 -52927679 - L2 LINE L2 -1235 2079 1803 822 170 0 0 chr3 174597315 174597450 -52927128 + AluJo SINE Alu 1 135 -177 309 319 52 68 chr3 174598586 174598837 -52925741 - L1 LINE L1 -1823 4323 4077 1844 188 67 39 chr3 174598971 174599022 -52925556 + Tigger1 DNA MER2_type 1 49 -2369 432 0 0 0 chr3 174599022 174599070 -52925508 + (TA)n Simple_repeat Simple_repeat 2 49 0 189 0 0 0 chr3 174599082 174599103 -52925475 + (CA)n Simple_repeat Simple_repeat 2 22 0 2066 125 0 0 chr3 174599103 174599376 -52925202 - AluSx SINE Alu -33 279 4 1844 188 67 39 chr3 174599376 174599733 -52924845 + Tigger1 DNA MER2_type 53 428 -1990 1080 169 15 0 chr3 174599736 174599931 -52924647 + L1PB1 LINE L1 3 200 -6663 14578 186 25 13 chr3 174599933 174605603 -52918975 + L1PB1 LINE L1 636 6517 -350 439 87 25 124 chr3 174605615 174606432 -52918146 + (TA)n Simple_repeat Simple_repeat 1 735 0 203 172 80 0 chr3 174606481 174606644 -52917934 + (TA)n Simple_repeat Simple_repeat 2 177 0 448 73 10 132 chr3 174606660 174606864 -52917714 + (TA)n Simple_repeat Simple_repeat 1 179 0 2584 91 19 3 chr3 174606864 174607226 -52917352 + L1PB1 LINE L1 6498 6865 -2 3310 126 9 15 chr3 174607255 174607786 -52916792 + Tigger1 DNA MER2_type 413 940 -1478 466 272 131 5 chr3 174608499 174608690 -52915888 + MARNA DNA Mariner 302 516 -70 1128 285 33 71 chr3 174608693 174609174 -52915404 + MLT1J LTR MaLR 3 465 -46 371 266 32 83 chr3 174609549 174609801 -52914777 - L2 LINE L2 0 3313 3075 486 259 20 61 chr3 174610104 174610351 -52914227 - L2 LINE L2 0 3313 3077 3371 71 14 2 chr3 174610522 174610961 -52913617 + MLT2A1 LTR ERVL 1 444 0 6336 123 40 1 chr3 174611284 174612259 -52912319 - Tigger1 DNA MER2_type 0 2418 1406 2576 105 6 0 chr3 174612259 174612612 -52911966 - THE1A LTR MaLR 0 355 1 10018 90 13 0 chr3 174612617 174614178 -52910400 - THE1A-int LTR MaLR 0 1580 1 2654 88 6 0 chr3 174614178 174614531 -52910047 - THE1A LTR MaLR 0 355 1 8664 136 16 23 chr3 174614531 174615950 -52908628 - Tigger1 DNA MER2_type -1008 1410 1 2042 151 0 0 chr3 174616742 174617034 -52907544 + AluSx SINE Alu 1 292 -20 450 287 47 72 chr3 174617066 174617345 -52907233 + L1ME LINE L1 5509 5780 -341 2789 195 18 10 chr3 174617951 174618464 -52906114 - MER74A LTR ERVL -16 542 26 1213 206 20 71 chr3 174619149 174619543 -52905035 + MLT1A2 LTR MaLR 1 374 0 316 336 46 15 chr3 174620536 174620667 -52903911 + L1MCa LINE L1 1420 1554 -4872 * 348 283 101 35 chr3 174620634 174620832 -52903746 + HAL1 LINE L1 1840 2050 -737 2266 79 0 67 chr3 174621001 174621329 -52903249 - AluSq SINE Alu -7 306 1 527 78 39 98 chr3 174622222 174622324 -52902254 - MER53 DNA DNA 0 189 94 445 294 80 33 chr3 174622325 174622540 -52902038 + MIR SINE MIR 40 262 0 4292 175 57 33 chr3 174622906 174623839 -52900739 + L1MC3 LINE L1 6701 7655 -130 536 268 12 42 chr3 174623836 174624004 -52900574 - L1ME1 LINE L1 -62 6104 5942 * 554 191 19 0 chr3 174624056 174624161 -52900417 + L1MC3 LINE L1 7658 7764 -21 1740 187 52 56 chr3 174624167 174624703 -52899875 + L1ME1 LINE L1 4700 5233 -913 1614 193 75 114 chr3 174624712 174625291 -52899287 + L1ME1 LINE L1 5290 5847 -317 2005 115 0 11 chr3 174625291 174625578 -52899000 + AluSg SINE Alu 2 285 -25 1614 193 75 114 chr3 174625578 174625660 -52898918 + L1ME1 LINE L1 5847 5931 -233 1594 99 31 5 chr3 174625664 174625887 -52898691 + AluSq SINE Alu 1 229 -84 2004 184 76 26 chr3 174625889 174626350 -52898228 - LTR2B LTR ERV1 0 490 7 399 152 0 0 chr3 174626349 174626415 -52898163 + AluSq SINE Alu 226 291 -12 * 598 235 49 59 chr3 174626438 174626642 -52897936 + L1ME1 LINE L1 5976 6178 0 832 226 46 26 chr3 174626680 174626875 -52897703 + MIR SINE MIR 49 247 -15 497 307 191 27 chr3 174626891 174627403 -52897175 + L2 LINE L2 2458 3058 -255 2273 221 62 8 chr3 174627529 174628570 -52896008 - L1MC4 LINE L1 -150 7892 6658 21 82 0 0 chr3 174628577 174628626 -52895952 + AT_rich Low_complexity Low_complexity 1 49 0 462 271 130 16 chr3 174628629 174628821 -52895757 - L1MC4 LINE L1 -1371 6671 6458 944 114 29 6 chr3 174629058 174629233 -52895345 + CT-rich Low_complexity Low_complexity 2 180 0 194 301 223 10 chr3 174629234 174629337 -52895241 + L2 LINE L2 3136 3260 -12 455 342 55 0 chr3 174630915 174631114 -52893464 + MIR SINE MIR 32 241 -21 304 308 0 48 chr3 174632691 174632795 -52891783 + L2 LINE L2 3174 3272 0 3967 128 18 16 chr3 174633224 174633834 -52890744 - LTR36 LTR ERV1 0 611 1 1818 203 57 30 chr3 174634325 174634784 -52889794 + MLT1D LTR MaLR 35 505 0 1802 168 0 10 chr3 174635342 174635634 -52888944 - AluJb SINE Alu -22 290 2 1760 154 33 39 chr3 174635798 174636161 -52888417 - MER46B DNA MER2_type 0 236 1 231 294 65 33 chr3 174637194 174637286 -52887292 + MIR SINE MIR 157 251 -11 1147 330 49 12 chr3 174638523 174639029 -52885549 + L2 LINE L2 2449 2973 -341 1806 175 13 58 chr3 174639156 174639469 -52885109 - MLT1A1 LTR MaLR 0 365 70 2201 157 60 8 chr3 174639469 174639870 -52884708 - MSTB LTR MaLR 0 426 5 1806 175 13 58 chr3 174639870 174639938 -52884640 - MLT1A1 LTR MaLR -295 70 1 616 95 0 11 chr3 174640612 174640707 -52883871 + (GA)n Simple_repeat Simple_repeat 1 94 0 546 91 0 0 chr3 174641891 174641968 -52882610 + (TTCC)n Simple_repeat Simple_repeat 4 80 0 1744 184 6 19 chr3 174641979 174642294 -52882284 - AluJb SINE Alu -1 311 1 23 0 0 0 chr3 174642421 174642444 -52882134 + AT_rich Low_complexity Low_complexity 1 23 0 2182 115 3 0 chr3 174643509 174643804 -52880774 + AluSx SINE Alu 3 298 -14 22 0 0 0 chr3 174643939 174643961 -52880617 + AT_rich Low_complexity Low_complexity 1 22 0 265 323 48 57 chr3 174644004 174644440 -52880138 + L1ME4a LINE L1 5494 5925 -196 223 191 0 21 chr3 174646240 174646287 -52878291 - L2 LINE L2 0 3313 3268 3763 186 15 8 chr3 174646359 174647089 -52877489 - L1MB7 LINE L1 -37 6147 5413 583 217 26 0 chr3 174647105 174647220 -52877358 - FLAM_C SINE Alu -23 120 3 570 269 6 6 chr3 174647222 174647393 -52877185 - L1MB7 LINE L1 -1443 4703 4533 2289 216 39 10 chr3 174647484 174648076 -52876502 - L1MB7 LINE L1 -1605 4541 3933 581 294 138 9 chr3 174648313 174648531 -52876047 + MIR SINE MIR 1 246 -16 361 271 62 0 chr3 174648541 174648637 -52875941 - LTR33 LTR ERVL -304 217 116 265 132 0 0 chr3 174648639 174648677 -52875901 - MLT1E3 LTR MaLR -584 40 3 668 277 67 25 chr3 174649951 174650233 -52874345 - LTR16A1 LTR ERVL -5 452 159 1829 188 82 3 chr3 174652779 174653146 -52871432 + MSTD LTR MaLR 1 396 0 22 0 0 0 chr3 174653356 174653378 -52871200 + AT_rich Low_complexity Low_complexity 1 22 0 29 0 0 0 chr3 174654084 174654113 -52870465 + AT_rich Low_complexity Low_complexity 1 29 0 233 102 34 51 chr3 174655142 174655201 -52869377 + A-rich Low_complexity Low_complexity 2 59 0 884 298 104 51 chr3 174655799 174655870 -52868708 + L2 LINE L2 2458 2524 -789 1914 176 19 21 chr3 174655870 174656246 -52868332 - THE1C LTR MaLR 0 375 1 884 298 104 51 chr3 174656246 174656994 -52867584 + L2 LINE L2 2524 3313 0 2084 91 35 7 chr3 174657556 174657843 -52866735 + AluY SINE Alu 1 295 -16 1116 135 6 0 chr3 174657846 174658002 -52866576 + AluSg/x SINE Alu 137 293 -19 243 0 0 0 chr3 174658557 174658584 -52865994 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 254 49 0 49 chr3 174658963 174659004 -52865574 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 614 256 126 11 chr3 174659686 174659948 -52864630 - L1MEc LINE L1 -5501 895 604 583 183 100 0 chr3 174659948 174660068 -52864510 - FRAM SINE Alu -19 157 26 1003 262 144 42 chr3 174660073 174660504 -52864074 - L1MEc LINE L1 -5811 585 111 9696 196 21 28 chr3 174660512 174662878 -52861700 + L1M1 LINE L1 3470 5817 -1748 6716 149 19 32 chr3 174662915 174665044 -52859534 + L1MA8 LINE L1 4075 6182 -109 459 104 0 0 chr3 174665048 174665115 -52859463 + MER41A LTR ERV1 400 466 -88 539 191 0 0 chr3 174665123 174665238 -52859340 + L1MA8 LINE L1 6175 6289 -2 21 0 0 0 chr3 174665238 174665259 -52859319 + AT_rich Low_complexity Low_complexity 1 21 0 632 295 80 31 chr3 174665799 174666124 -52858454 - HAL1 LINE L1 -626 1881 1541 298 288 64 40 chr3 174666198 174666448 -52858130 - HAL1 LINE L1 -1085 1422 1167 381 290 140 85 chr3 174666707 174667072 -52857506 - HAL1 LINE L1 -1696 811 427 246 299 65 82 chr3 174667086 174667454 -52857124 - HAL1 LINE L1 -2145 362 1 358 219 38 109 chr3 174668803 174668986 -52855592 + MLT1L LTR MaLR 236 405 -210 237 364 31 31 chr3 174669589 174669718 -52854860 + L2 LINE L2 3143 3271 -1 490 28 42 0 chr3 174671236 174671307 -52853271 + (TCTA)n Simple_repeat Simple_repeat 4 77 0 778 235 115 0 chr3 174673391 174673591 -52850987 + MER58A DNA MER1_type 1 223 -1 1358 186 58 0 chr3 174674097 174674371 -52850207 + AluJo SINE Alu 2 291 -21 419 246 92 21 chr3 174674561 174674703 -52849875 + MER103 DNA DNA 9 160 -6 211 260 0 0 chr3 174674706 174674756 -52849822 - L2 LINE L2 -9 3263 3214 1043 279 205 19 chr3 174675568 174676309 -52848269 + L2 LINE L2 2270 3213 -100 290 241 13 51 chr3 174676337 174676416 -52848162 + MIR SINE MIR 152 227 -35 288 192 71 81 chr3 174676547 174676646 -52847932 + L2 LINE L2 3216 3313 0 267 264 176 0 chr3 174676984 174677075 -52847503 - MIR SINE MIR -110 152 46 20124 118 7 8 chr3 174677081 174677477 -52847101 + L1PA8 LINE L1 2153 2548 -3624 2219 113 0 0 chr3 174677477 174677768 -52846810 + AluSg SINE Alu 1 291 -19 20124 118 7 8 chr3 174677768 174681392 -52843186 + L1PA8 LINE L1 2548 6168 -4 281 295 54 47 chr3 174681453 174681576 -52843002 - MIR SINE MIR 0 262 139 536 216 95 0 chr3 174681576 174681692 -52842886 + MIR SINE MIR 4 130 -132 23 33 0 0 chr3 174682241 174682271 -52842307 + AT_rich Low_complexity Low_complexity 1 30 0 1499 246 86 32 chr3 174682277 174682846 -52841732 + Charlie7 DNA MER1_type 137 736 -1876 407 181 129 48 chr3 174682878 174683088 -52841490 + Charlie7 DNA MER1_type 2384 2610 -2 180 0 0 0 chr3 174683885 174683905 -52840673 + (TG)n Simple_repeat Simple_repeat 1 20 0 339 296 0 0 chr3 174683905 174683993 -52840585 + L1MC4 LINE L1 6615 6702 -1340 395 301 15 22 chr3 174684038 174684174 -52840404 + MIR SINE MIR 72 206 -56 1766 63 0 14 chr3 174684752 174684974 -52839604 + AluY SINE Alu 82 300 -11 269 26 26 0 chr3 174685230 174685268 -52839310 + (TG)n Simple_repeat Simple_repeat 2 40 0 1868 141 53 10 chr3 174686210 174686509 -52838069 - AluSx SINE Alu 0 312 1 2054 122 74 14 chr3 174687186 174687538 -52837040 - THE1C LTR MaLR 0 375 3 23 54 0 0 chr3 174688795 174688832 -52835746 + AT_rich Low_complexity Low_complexity 1 37 0 389 279 44 57 chr3 174689176 174689334 -52835244 + MER5A DNA MER1_type 34 189 0 22 35 0 0 chr3 174689498 174689527 -52835051 + AT_rich Low_complexity Low_complexity 1 29 0 2383 58 0 46 chr3 174689545 174689669 -52834909 - AluY SINE Alu 0 311 183 2842 19 0 0 chr3 174689669 174689983 -52834595 - AluYb8 SINE Alu -4 314 1 2383 58 0 46 chr3 174689983 174690184 -52834394 - AluY SINE Alu -128 183 1 28 29 0 0 chr3 174692046 174692081 -52832497 + AT_rich Low_complexity Low_complexity 1 35 0 24 32 0 0 chr3 174692136 174692167 -52832411 + AT_rich Low_complexity Low_complexity 1 31 0 483 355 30 10 chr3 174692850 174693050 -52831528 + MIR3 SINE MIR 3 206 -2 23 33 0 0 chr3 174693522 174693552 -52831026 + AT_rich Low_complexity Low_complexity 1 30 0 270 303 74 51 chr3 174694247 174694422 -52830156 + MIR SINE MIR 70 248 -14 365 347 54 0 chr3 174694474 174694621 -52829957 + MIR SINE MIR 57 211 -51 22 0 0 0 chr3 174694701 174694723 -52829855 + AT_rich Low_complexity Low_complexity 1 22 0 2190 116 148 8 chr3 174696043 174696415 -52828163 - MSTA LTR MaLR 0 428 5 22 35 0 0 chr3 174696629 174696658 -52827920 + AT_rich Low_complexity Low_complexity 1 29 0 260 244 70 43 chr3 174697296 174697411 -52827167 + LTR35 LTR ERV1 1 118 -500 736 227 63 33 chr3 174697683 174698015 -52826563 + LTR35 LTR ERV1 348 618 0 580 301 51 9 chr3 174698034 174698250 -52826328 + LTR49-int LTR ERV1 414 638 -5308 312 211 0 0 chr3 174699003 174699055 -52825523 + LTR49-int LTR ERV1 2678 2729 -3217 2561 194 46 50 chr3 174699129 174700142 -52824436 + LTR49-int LTR ERV1 1383 3149 -1731 * 3898 132 47 75 chr3 174700133 174700570 -52824008 + LTR49-int LTR ERV1 4912 5318 -1013 1969 121 33 0 chr3 174700570 174700879 -52823699 + AluSx SINE Alu 1 318 0 3898 132 47 75 chr3 174700879 174701272 -52823306 + LTR49-int LTR ERV1 5318 5720 -611 287 315 20 20 chr3 174701891 174702037 -52822541 + MER70-int LTR ERVL 4520 4665 -358 * 312 357 5 11 chr3 174701913 174702098 -52822480 + LTR35-int LTR ERV1 6077 6260 -416 28 0 0 0 chr3 174702245 174702273 -52822305 + AT_rich Low_complexity Low_complexity 1 28 0 332 197 117 58 chr3 174702392 174702529 -52822049 + LTR35-int LTR ERV1 6526 6670 -6 308 278 69 56 chr3 174702559 174702703 -52821875 + LTR35 LTR ERV1 1 146 -472 691 101 10 0 chr3 174702810 174702909 -52821669 - LTR12 LTR ERV1 0 714 615 306 253 10 0 chr3 174702911 174703010 -52821568 - LTR30 LTR ERV1 -79 643 544 2333 62 0 3 chr3 174703024 174703328 -52821250 - L1PA6 LINE L1 -1 6153 5851 1447 119 67 67 chr3 174703331 174703600 -52820978 - LTR12 LTR ERV1 -440 274 6 613 239 67 31 chr3 174703600 174703916 -52820662 + LTR35 LTR ERV1 349 618 0 234 277 21 32 chr3 174704044 174704138 -52820440 + MER34 LTR ERV1 41 133 -409 382 241 68 68 chr3 174704295 174704486 -52820092 + LTR48 LTR ERV1 588 778 -9 1922 173 0 6 chr3 174704651 174704964 -52819614 + AluJb SINE Alu 1 311 -1 26 0 0 0 chr3 174706005 174706031 -52818547 + AT_rich Low_complexity Low_complexity 1 26 0 296 220 53 106 chr3 174706163 174706295 -52818283 + Charlie8 DNA MER1_type 33 157 -2260 198 132 79 0 chr3 174706357 174706433 -52818145 + (TA)n Simple_repeat Simple_repeat 2 83 0 310 276 61 0 chr3 174706473 174706571 -52818007 + Charlie8 DNA MER1_type 176 279 -2138 206 196 22 22 chr3 174706818 174706864 -52817714 - MER5A DNA MER1_type -143 46 1 582 198 0 0 chr3 174707510 174707611 -52816967 - AluJ/FLAM SINE Alu -211 101 1 3473 135 39 59 chr3 174709292 174709446 -52815132 - MER39B LTR ERV1 0 653 498 4102 147 41 4 chr3 174709446 174710161 -52814417 - L1PA16 LINE L1 -5 6161 5421 3473 135 39 59 chr3 174710161 174710229 -52814349 - MER39B LTR ERV1 -155 498 430 2666 29 0 13 chr3 174710229 174710544 -52814034 + AluYa5 SINE Alu 1 311 0 3473 135 39 59 chr3 174710544 174710986 -52813592 - MER39B LTR ERV1 -223 430 1 319 301 32 16 chr3 174711577 174711700 -52812878 - L2 LINE L2 -1 3312 3188 1595 164 3 44 chr3 174711705 174712027 -52812551 - AluJb SINE Alu 0 315 6 301 330 48 0 chr3 174712333 174712436 -52812142 + MER91C DNA MER1_type 33 140 0 1057 203 92 43 chr3 174712493 174712819 -52811759 + MER2 DNA MER2_type 3 344 0 194 361 58 26 chr3 174712824 174712979 -52811599 - L2 LINE L2 -255 3017 2858 319 325 41 61 chr3 174713032 174713278 -52811300 - L2 LINE L2 -897 2417 2177 523 264 118 45 chr3 174713917 174714196 -52810382 - L1ME3 LINE L1 -232 5946 5689 1759 172 15 26 chr3 174714196 174714539 -52810039 - MER44D DNA MER2_type 0 609 1 523 264 118 45 chr3 174714539 174715074 -52809504 - L1ME3 LINE L1 -489 5689 5039 1906 162 3 0 chr3 174715083 174715379 -52809199 - AluSx SINE Alu -15 297 1 331 310 18 18 chr3 174715559 174715730 -52808848 - L1ME3 LINE L1 -1323 4823 4653 23 0 0 0 chr3 174715814 174715837 -52808741 + AT_rich Low_complexity Low_complexity 1 23 0 1057 308 89 13 chr3 174716246 174716762 -52807816 - L2 LINE L2 -1 3312 2762 1973 214 116 53 chr3 174716862 174717760 -52806818 - Charlie2 DNA MER1_type -18 2844 1891 3515 53 32 105 chr3 174717765 174718329 -52806249 - L1PA7 LINE L1 -3 6151 5629 852 278 21 45 chr3 174718377 174718711 -52805867 - Charlie2 DNA MER1_type -2536 326 1 1766 148 0 4 chr3 174719814 174720091 -52804487 + AluSg SINE Alu 35 310 0 417 336 116 39 chr3 174720540 174721022 -52803556 + L2 LINE L2 2772 3280 -33 30 69 0 0 chr3 174722889 174722947 -52801631 + AT_rich Low_complexity Low_complexity 1 58 0 450 264 52 66 chr3 174723170 174723382 -52801196 - MIR SINE MIR -33 229 21 1912 221 54 8 chr3 174724191 174724674 -52799904 + MLT1D LTR MaLR 1 505 0 1087 136 6 11 chr3 174724705 174724914 -52799664 - AluSg/x SINE Alu 0 310 135 282 239 92 39 chr3 174725236 174725366 -52799212 + MLT1K LTR MaLR 438 574 -14 21 0 0 0 chr3 174725395 174725416 -52799162 + AT_rich Low_complexity Low_complexity 1 21 0 2069 127 7 0 chr3 174727150 174727450 -52797128 + AluSx SINE Alu 1 302 -10 945 230 88 31 chr3 174727563 174727881 -52796697 + MER2 DNA MER2_type 10 345 0 1266 253 123 96 chr3 174728346 174729225 -52795353 - HAL1 LINE L1 -5 2502 1649 207 0 0 0 chr3 174729225 174729248 -52795330 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2102 132 0 0 chr3 174729250 174729538 -52795040 - AluSq SINE Alu -25 288 1 1266 253 123 96 chr3 174729538 174730299 -52794279 - HAL1 LINE L1 -858 1649 814 5989 180 12 2 chr3 174731046 174732236 -52792342 - L1MC1 LINE L1 0 6333 5130 223 191 0 21 chr3 174732739 174732786 -52791792 - L2 LINE L2 0 3313 3268 2462 206 19 18 chr3 174732858 174733421 -52791157 - L1MB7 LINE L1 -37 6147 5584 1399 268 34 22 chr3 174733532 174734065 -52790513 - L1MB7 LINE L1 -785 5361 4823 1298 223 14 22 chr3 174734065 174734343 -52790235 - AluJb SINE Alu -36 276 1 4131 219 42 51 chr3 174734343 174735479 -52789099 - L1MB7 LINE L1 -1321 4825 3700 2232 114 0 0 chr3 174735479 174735776 -52788802 - AluSx SINE Alu -15 297 1 4131 219 42 51 chr3 174735776 174735914 -52788664 - L1MB7 LINE L1 -2446 3700 3562 270 0 0 0 chr3 174735987 174736017 -52788561 + (TAAA)n Simple_repeat Simple_repeat 2 31 0 306 0 0 0 chr3 174736339 174736373 -52788205 + (CA)n Simple_repeat Simple_repeat 2 35 0 224 271 132 54 chr3 174736986 174737115 -52787463 - MIR SINE MIR -77 185 47 2207 57 0 66 chr3 174737126 174737444 -52787134 - AluY SINE Alu -14 297 1 276 190 114 13 chr3 174738934 174739013 -52785565 + MIR SINE MIR 176 262 0 219 238 0 0 chr3 174739959 174740001 -52784577 + (TG)n Simple_repeat Simple_repeat 1 42 0 183 80 0 0 chr3 174740441 174740466 -52784112 + (CA)n Simple_repeat Simple_repeat 1 25 0 186 43 0 0 chr3 174742374 174742397 -52782181 + (T)n Simple_repeat Simple_repeat 1 23 0 256 301 12 0 chr3 174742601 174742684 -52781894 + GA-rich Low_complexity Low_complexity 5 88 0 523 294 106 13 chr3 174742916 174743151 -52781427 - MIR SINE MIR 0 262 6 226 204 0 0 chr3 174743149 174743193 -52781385 + MIR SINE MIR 188 231 -31 * 324 294 243 7 chr3 174743314 174743450 -52781128 + MER5A DNA MER1_type 9 176 -13 315 0 0 0 chr3 174745098 174745173 -52779405 + (TTA)n Simple_repeat Simple_repeat 1 110 0 315 0 0 0 chr3 174745173 174745208 -52779370 + (TTA)n Simple_repeat Simple_repeat 2 36 0 571 287 72 11 chr3 174746296 174746477 -52778101 + MIR SINE MIR 6 197 -65 1932 58 42 74 chr3 174746696 174747006 -52777572 + AluY SINE Alu 1 300 -11 2328 67 0 0 chr3 174747273 174747590 -52776988 - AluY SINE Alu 0 317 1 324 64 0 0 chr3 174755765 174755812 -52768766 + (TG)n Simple_repeat Simple_repeat 2 48 0 189 107 0 0 chr3 174756649 174756677 -52767901 + (TATG)n Simple_repeat Simple_repeat 4 31 0 253 296 125 0 chr3 174757483 174757571 -52767007 - MER112 DNA MER1_type -13 247 149 427 319 36 12 chr3 174758039 174758205 -52766373 + MIR SINE MIR 15 184 -78 300 373 33 8 chr3 174759030 174759274 -52765304 - L2 LINE L2 -917 2397 2148 3648 123 14 18 chr3 174760043 174760214 -52764364 - L1PA16 LINE L1 -9 6157 5987 2080 132 73 12 chr3 174760214 174760555 -52764023 + THE1B LTR MaLR 1 362 -2 12022 87 1 4 chr3 174760557 174762143 -52762435 + THE1B-int LTR MaLR 1 1580 0 2181 105 54 23 chr3 174762143 174762496 -52762082 + THE1B LTR MaLR 1 364 0 3648 123 14 18 chr3 174762496 174762891 -52761687 - L1PA16 LINE L1 -178 5988 5589 1026 229 61 50 chr3 174763282 174763562 -52761016 + MLT1G LTR MaLR 3 285 -305 228 135 0 0 chr3 174763592 174763629 -52760949 + (TG)n Simple_repeat Simple_repeat 1 37 0 6886 214 107 23 chr3 174765003 174766227 -52758351 + L1MD1 LINE L1 17 1430 -5110 2170 120 7 0 chr3 174766227 174766518 -52758060 + AluSc SINE Alu 1 293 -16 6886 214 107 23 chr3 174766518 174767029 -52757549 + L1MD1 LINE L1 1430 1897 -4643 6065 231 60 25 chr3 174767041 174768976 -52755602 + L1MD1 LINE L1 3374 5419 -1334 189 0 0 0 chr3 174768976 174768997 -52755581 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 6065 231 60 25 chr3 174768997 174769834 -52754744 + L1MD1 LINE L1 5419 6225 -528 21 36 0 0 chr3 174769838 174769866 -52754712 + AT_rich Low_complexity Low_complexity 1 28 0 665 184 8 24 chr3 174769866 174769991 -52754587 - FLAM_C SINE Alu -9 134 12 1842 167 41 29 chr3 174769998 174770098 -52754480 + L1MD1 LINE L1 6209 6306 -330 1092 206 13 4 chr3 174770098 174770331 -52754247 - MER46A DNA MER2_type 0 236 2 1842 167 41 29 chr3 174770331 174770643 -52753935 + L1MD1 LINE L1 6306 6626 -10 1336 202 52 62 chr3 174770683 174771148 -52753430 + L1ME2 LINE L1 5714 6334 0 632 239 78 62 chr3 174772303 174772546 -52752032 + MIR SINE MIR 11 257 -5 24 32 0 0 chr3 174773511 174773542 -52751036 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 174773920 174773941 -52750637 + AT_rich Low_complexity Low_complexity 1 21 0 203 289 101 81 chr3 174774318 174774467 -52750111 - L2 LINE L2 -776 2538 2387 672 324 48 39 chr3 174774722 174775077 -52749501 - L2 LINE L2 -1 3312 2955 452 317 28 6 chr3 174775279 174775459 -52749119 - L2 LINE L2 -348 2966 2783 255 140 0 0 chr3 174776327 174776377 -52748201 + (ATTG)n Simple_repeat Simple_repeat 2 51 0 216 274 16 16 chr3 174777209 174777271 -52747307 + CT-rich Low_complexity Low_complexity 5 66 0 2116 220 75 40 chr3 174777474 174778224 -52746354 + L1MC4 LINE L1 6971 7898 -144 23 0 0 0 chr3 174778266 174778289 -52746289 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr3 174778553 174778582 -52745996 + AT_rich Low_complexity Low_complexity 1 29 0 300 261 85 23 chr3 174778977 174779107 -52745471 - MIR SINE MIR -58 204 67 23 68 0 0 chr3 174779716 174779760 -52744818 + AT_rich Low_complexity Low_complexity 1 44 0 773 150 15 15 chr3 174779833 174779966 -52744612 + FLAM_C SINE Alu 1 133 0 699 239 131 14 chr3 174780570 174780792 -52743786 + MIR SINE MIR 1 248 -14 733 331 85 18 chr3 174781020 174781410 -52743168 + LTR33 LTR ERVL 4 419 -102 23 33 0 0 chr3 174781682 174781712 -52742866 + AT_rich Low_complexity Low_complexity 1 30 0 247 337 84 0 chr3 174783282 174783377 -52741201 + LTR16C LTR ERVL 375 477 -14 208 368 58 53 chr3 174783905 174784028 -52740550 - MIR3 SINE MIR -7 201 75 2502 164 28 5 chr3 174784028 174784462 -52740116 + MER65A LTR ERV1 2 445 0 208 368 58 53 chr3 174784462 174784509 -52740069 - MIR3 SINE MIR -133 75 30 1934 153 44 9 chr3 174785487 174785827 -52738751 + L1MC1 LINE L1 5973 6324 -9 200 229 0 21 chr3 174785964 174786012 -52738566 + A-rich Low_complexity Low_complexity 134 180 0 282 308 89 35 chr3 174786489 174786658 -52737920 - L2 LINE L2 -221 3051 2874 205 329 14 14 chr3 174786649 174786719 -52737859 - L2 LINE L2 -847 2467 2398 * 576 211 18 0 chr3 174786777 174786891 -52737687 - MER63A DNA MER1_type -37 173 58 398 365 35 0 chr3 174787262 174787459 -52737119 - MIR SINE MIR -11 251 48 2288 107 60 11 chr3 174787558 174787905 -52736673 - THE1B LTR MaLR 0 364 1 10248 112 40 10 chr3 174787905 174789439 -52735139 - THE1B-int LTR MaLR 0 1580 1 2411 115 16 19 chr3 174789439 174789804 -52734774 - THE1B LTR MaLR 0 364 1 630 249 153 5 chr3 174790420 174790629 -52733949 - MIR SINE MIR -11 251 12 1922 159 0 0 chr3 174790883 174791193 -52733385 + AluSx SINE Alu 1 310 0 29 47 0 0 chr3 174791198 174791241 -52733337 + AT_rich Low_complexity Low_complexity 1 43 0 2012 128 121 45 chr3 174793180 174793357 -52731221 + MSTA LTR MaLR 1 163 -265 2507 88 0 0 chr3 174793357 174793665 -52730913 + AluSc SINE Alu 1 308 -1 2012 128 121 45 chr3 174793665 174793885 -52730693 + MSTA LTR MaLR 163 428 0 190 348 18 9 chr3 174794017 174794129 -52730449 + L2 LINE L2 2331 2443 -871 764 221 60 15 chr3 174794574 174794773 -52729805 + MER3 DNA MER1_type 1 208 -1 365 263 128 45 chr3 174794959 174795115 -52729463 + MIR SINE MIR 46 214 -48 245 418 16 0 chr3 174795289 174795411 -52729167 + L2 LINE L2 3146 3269 -3 24 96 0 0 chr3 174796372 174796445 -52728133 + AT_rich Low_complexity Low_complexity 1 73 0 23 78 0 0 chr3 174796473 174796524 -52728054 + AT_rich Low_complexity Low_complexity 1 51 0 185 371 14 0 chr3 174797618 174797688 -52726890 - MIR3 SINE MIR -41 167 97 248 227 34 68 chr3 174798012 174798100 -52726478 - MLT1G1 LTR MaLR -34 561 477 238 240 146 10 chr3 174798233 174798329 -52726249 - MLT1I LTR MaLR -238 171 63 181 289 22 0 chr3 174798460 174798505 -52726073 - L2 LINE L2 -9 3304 3259 734 238 96 25 chr3 174798905 174799145 -52725433 + MIR SINE MIR 5 261 -1 990 171 0 140 chr3 174799272 174799536 -52725042 + AluJo SINE Alu 6 232 -80 270 345 11 0 chr3 174799842 174799929 -52724649 + L2 LINE L2 91 178 -3136 197 329 25 0 chr3 174800006 174800085 -52724493 + L2 LINE L2 3091 3171 -142 345 300 20 10 chr3 174800172 174800272 -52724306 + L2 LINE L2 2967 3067 -205 215 140 20 0 chr3 174800390 174800440 -52724138 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 258 105 0 0 chr3 174800879 174800917 -52723661 + (GAAA)n Simple_repeat Simple_repeat 3 40 0 540 298 55 36 chr3 174801429 174801742 -52722836 - LTR33 LTR ERVL -31 490 129 349 304 82 38 chr3 174801764 174801922 -52722656 - L1ME LINE L1 -369 5752 5588 583 307 64 34 chr3 174802035 174802393 -52722185 - HAL1b LINE L1 -619 729 361 24 32 0 0 chr3 174802419 174802450 -52722128 + AT_rich Low_complexity Low_complexity 1 31 0 2679 152 84 83 chr3 174803127 174803554 -52721024 - L1 LINE L1 -2243 3903 3473 1805 165 0 0 chr3 174803554 174803833 -52720745 - AluJb SINE Alu -33 279 1 2679 152 84 83 chr3 174803833 174804091 -52720487 - L1 LINE L1 -2673 3473 3217 28 79 0 0 chr3 174804508 174804571 -52720007 + AT_rich Low_complexity Low_complexity 1 63 0 382 268 54 88 chr3 174804671 174804876 -52719702 - L2 LINE L2 -9 3304 3107 2311 110 0 0 chr3 174805138 174805446 -52719132 + AluSg SINE Alu 1 308 -2 315 279 62 50 chr3 174805525 174805686 -52718892 - L2 LINE L2 -19 3294 3132 2303 153 68 8 chr3 174805847 174806247 -52718331 - MSTB LTR MaLR 0 426 3 9265 165 20 12 chr3 174806249 174807887 -52716691 - MSTB-int LTR MaLR 0 1651 1 810 90 0 0 chr3 174807927 174808027 -52716551 + AluY SINE Alu 1 100 -211 301 291 82 90 chr3 174808096 174808439 -52716139 - L2 LINE L2 -347 2967 2628 1069 294 64 40 chr3 174808534 174808814 -52715764 + LTR16B LTR ERVL 2 299 -165 1677 163 62 39 chr3 174808814 174809171 -52715407 + MLT1A1 LTR MaLR 1 365 0 1069 294 64 40 chr3 174809171 174809342 -52715236 + LTR16B LTR ERVL 299 464 0 458 329 129 49 chr3 174809384 174809699 -52714879 - L2 LINE L2 -833 2481 2193 2170 112 7 0 chr3 174809699 174810002 -52714576 + AluSx SINE Alu 5 309 -3 458 329 129 49 chr3 174810002 174810790 -52713788 - L2 LINE L2 -1121 2193 1289 271 347 123 38 chr3 174810909 174811226 -52713352 - L2 LINE L2 -2619 695 352 186 188 104 0 chr3 174811240 174811288 -52713290 - MIR SINE MIR 0 262 210 1037 145 0 0 chr3 174811288 174811447 -52713131 - AluSg/x SINE Alu -8 304 146 189 339 24 32 chr3 174811529 174811653 -52712925 - L2 LINE L2 -2960 354 232 288 313 153 46 chr3 174812031 174812205 -52712373 + MER102a DNA MER1_type 10 164 -1253 562 222 0 26 chr3 174812205 174812322 -52712256 - MER81 DNA DNA 0 114 1 288 313 153 46 chr3 174812322 174812428 -52712150 + MER102a DNA MER1_type 164 320 -10 2349 112 0 3 chr3 174813829 174814142 -52710436 - AluSx SINE Alu 0 312 1 33 43 0 0 chr3 174814186 174814233 -52710345 + AT_rich Low_complexity Low_complexity 1 47 0 287 324 44 25 chr3 174814839 174815039 -52709539 + L1MDb LINE L1 312 428 -6115 2155 208 81 42 chr3 174815215 174815755 -52708823 + L1MDb LINE L1 1129 1711 -4829 2343 107 3 0 chr3 174815755 174816064 -52708514 + AluSx SINE Alu 1 310 -2 2155 208 81 42 chr3 174816064 174816316 -52708262 + L1MDb LINE L1 1711 1952 -4588 285 242 0 0 chr3 174816341 174816407 -52708171 + L1MDb LINE L1 2107 2172 -4368 2526 159 17 5 chr3 174816447 174816868 -52707710 + Tigger3b DNA MER2_type 1 426 -805 1667 123 80 0 chr3 174816876 174817127 -52707451 + AluSp SINE Alu 38 308 -5 440 83 0 42 chr3 174817130 174817226 -52707352 + (GAA)n Simple_repeat Simple_repeat 1 92 0 841 162 0 7 chr3 174817226 174817368 -52707210 + Tigger3b DNA MER2_type 407 547 -684 598 153 10 0 chr3 174817371 174817469 -52707109 - AluJo SINE Alu -176 136 38 3672 142 31 16 chr3 174817469 174818154 -52706424 + Tigger3b DNA MER2_type 537 1231 0 1252 239 59 20 chr3 174818160 174818735 -52705843 + L1MDb LINE L1 2226 2830 -3710 1325 222 3 23 chr3 174818750 174818989 -52705589 + L1MDb LINE L1 3091 3322 -3218 2483 75 0 3 chr3 174818989 174819295 -52705283 + AluSg SINE Alu 1 305 -5 1325 222 3 23 chr3 174819295 174819407 -52705171 + L1MDb LINE L1 3322 3435 -3105 258 287 47 57 chr3 174819812 174820091 -52704487 - L1ME4a LINE L1 -209 5912 5637 22 0 0 0 chr3 174820111 174820133 -52704445 + AT_rich Low_complexity Low_complexity 1 22 0 1106 16 0 0 chr3 174820134 174820260 -52704318 - L1PA2 LINE L1 -7 6148 6023 5248 137 20 5 chr3 174820848 174822088 -52702490 + L1PA16 LINE L1 4906 6157 -9 455 353 45 5 chr3 174822554 174822639 -52701939 - MIR SINE MIR -23 239 159 2431 80 0 16 chr3 174822639 174822951 -52701627 - AluSg SINE Alu -3 307 1 455 353 45 5 chr3 174822951 174823066 -52701512 - MIR SINE MIR -103 159 31 318 26 0 0 chr3 174823641 174823680 -52700898 + (CA)n Simple_repeat Simple_repeat 2 40 0 23 0 0 0 chr3 174824055 174824078 -52700500 + AT_rich Low_complexity Low_complexity 1 23 0 194 257 27 40 chr3 174824195 174824269 -52700309 - MIR SINE MIR -110 152 80 1206 177 51 123 chr3 174824318 174824708 -52699870 - MLT1A1 LTR MaLR -3 362 1 284 278 0 4 chr3 174825700 174825822 -52698756 - MER5A DNA MER1_type -1 188 22 659 177 69 15 chr3 174825871 174826001 -52698577 + MER5A DNA MER1_type 53 189 0 377 180 45 163 chr3 174826013 174826058 -52698520 + MER5B DNA MER1_type 4 53 -125 1890 221 28 15 chr3 174826058 174826515 -52698063 + MLT1C LTR MaLR 5 467 0 377 180 45 163 chr3 174826515 174826547 -52698031 + MER5B DNA MER1_type 53 87 -91 330 45 0 0 chr3 174826547 174826591 -52697987 + (CA)n Simple_repeat Simple_repeat 1 44 0 377 180 45 163 chr3 174826591 174826690 -52697888 + MER5B DNA MER1_type 87 160 -18 457 342 16 21 chr3 174826831 174827021 -52697557 + MER5A DNA MER1_type 1 189 0 510 252 178 0 chr3 174827252 174827387 -52697191 + MER5A DNA MER1_type 31 189 0 1040 181 24 29 chr3 174827503 174827713 -52696865 + MER3 DNA MER1_type 1 209 0 2294 77 30 0 chr3 174828711 174829011 -52695567 - AluY SINE Alu -2 309 1 765 156 16 0 chr3 174829098 174829220 -52695358 - FLAM_C SINE Alu -19 124 1 207 416 67 38 chr3 174829303 174829512 -52695066 - L2 LINE L2 -86 3186 2972 279 332 179 5 chr3 174829981 174830177 -52694401 + MIR SINE MIR 28 257 -5 2153 94 4 0 chr3 174830710 174830986 -52693592 + AluSp SINE Alu 1 277 -36 718 191 20 12 chr3 174830988 174831234 -52693344 + GA-rich Low_complexity Low_complexity 1 248 0 1665 167 26 4 chr3 174831245 174831515 -52693063 + AluJo SINE Alu 7 282 -30 2163 122 0 0 chr3 174831602 174831896 -52692682 + AluSx SINE Alu 1 294 -18 207 69 0 0 chr3 174831896 174831925 -52692653 + (TA)n Simple_repeat Simple_repeat 1 29 0 223 324 155 0 chr3 174832316 174832458 -52692120 - MIR SINE MIR -14 248 85 182 294 20 0 chr3 174832459 174832510 -52692068 - MIR SINE MIR -140 122 71 508 306 126 8 chr3 174832684 174832939 -52691639 - LTR33 LTR ERVL 0 521 237 253 224 0 92 chr3 174833001 174833022 -52691556 + L1PB4 LINE L1 5311 5332 -824 2345 95 3 0 chr3 174833022 174833327 -52691251 + AluSg SINE Alu 1 306 -4 253 224 0 92 chr3 174833327 174833403 -52691175 + L1PB4 LINE L1 5332 5399 -757 180 111 0 0 chr3 174834129 174834156 -52690422 + (T)n Simple_repeat Simple_repeat 1 27 0 21 36 0 0 chr3 174834639 174834667 -52689911 + GC_rich Low_complexity Low_complexity 1 28 0 4169 146 11 21 chr3 174834976 174835235 -52689343 + L1PB4 LINE L1 5415 5675 -481 2344 99 0 22 chr3 174835235 174835547 -52689031 + AluSg SINE Alu 1 305 -5 4169 146 11 21 chr3 174835547 174835672 -52688906 + L1PB4 LINE L1 5675 5800 -356 252 0 0 0 chr3 174835672 174835700 -52688878 + (CA)n Simple_repeat Simple_repeat 2 29 0 4169 146 11 21 chr3 174835700 174836062 -52688516 + L1PB4 LINE L1 5800 6154 -2 948 217 14 0 chr3 174836098 174836310 -52688268 - L1MB5 LINE L1 -343 5831 5617 597 225 7 14 chr3 174836657 174836799 -52687779 - L1MB5 LINE L1 -578 5602 5462 322 358 75 0 chr3 174836964 174837084 -52687494 - L2 LINE L2 -10 3262 3134 1805 212 58 57 chr3 174837085 174837581 -52686997 - MLT1D LTR MaLR -2 503 7 2564 208 55 20 chr3 174837653 174838303 -52686275 + L1MD3 LINE L1 7317 7989 -6 184 393 0 0 chr3 174838345 174838401 -52686177 + MER5B DNA MER1_type 52 107 -71 881 277 40 119 chr3 174838473 174839018 -52685560 + L2 LINE L2 2812 3313 0 273 163 0 0 chr3 174839452 174839495 -52685083 + L2 LINE L2 3226 3268 -4 22 35 0 0 chr3 174839639 174839668 -52684910 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 174839955 174839977 -52684601 + AT_rich Low_complexity Low_complexity 1 22 0 288 393 60 49 chr3 174840110 174840395 -52684183 - L2 LINE L2 -4 3268 2981 * 762 346 134 19 chr3 174840372 174841150 -52683428 - L2 LINE L2 -1257 2057 1191 806 255 55 41 chr3 174841385 174841656 -52682922 + MER102a DNA MER1_type 45 319 -11 259 240 171 55 chr3 174841677 174841894 -52682684 + L2 LINE L2 2224 2465 -849 2495 87 13 51 chr3 174841963 174842353 -52682225 + THE1C LTR MaLR 1 375 0 362 366 116 39 chr3 174842461 174842849 -52681729 + L2 LINE L2 2852 3269 -3 2365 60 0 3 chr3 174843092 174843376 -52681202 + AluY SINE Alu 29 311 0 22 0 0 0 chr3 174844652 174844674 -52679904 + AT_rich Low_complexity Low_complexity 1 22 0 1645 171 0 21 chr3 174844840 174845126 -52679452 + AluJb SINE Alu 1 280 -32 505 309 166 23 chr3 174847479 174847822 -52676756 - L2 LINE L2 -25 3288 2897 31 26 0 0 chr3 174848854 174848892 -52675686 + AT_rich Low_complexity Low_complexity 1 38 0 207 239 43 19 chr3 174848908 174848981 -52675597 - MIR SINE MIR -92 116 39 22 56 0 0 chr3 174849369 174849405 -52675173 + AT_rich Low_complexity Low_complexity 1 36 0 2283 105 0 3 chr3 174849525 174849838 -52674740 + AluSq SINE Alu 1 312 -1 353 329 7 26 chr3 174850370 174850522 -52674056 - L1MEd LINE L1 -5490 629 481 2258 97 3 3 chr3 174850584 174850884 -52673694 - AluSx SINE Alu -12 300 1 297 250 86 36 chr3 174851095 174851235 -52673343 - L1MEd LINE L1 -5955 164 18 1655 269 54 41 chr3 174851346 174852286 -52672292 + L2 LINE L2 2353 3313 0 286 325 57 8 chr3 174852579 174852702 -52671876 + MIR SINE MIR 11 139 -123 180 111 0 0 chr3 174854685 174854712 -52669866 + (T)n Simple_repeat Simple_repeat 1 27 0 1695 34 91 0 chr3 174854717 174854926 -52669652 - SVA Other Other -3 1383 1156 936 304 70 26 chr3 174854929 174855429 -52669149 - MLT1K LTR MaLR -9 579 58 2320 112 0 0 chr3 174855621 174855924 -52668654 + AluSx SINE Alu 1 303 -9 21 0 0 0 chr3 174856318 174856339 -52668239 + AT_rich Low_complexity Low_complexity 1 21 0 381 148 0 0 chr3 174856571 174856652 -52667926 + (TG)n Simple_repeat Simple_repeat 2 82 0 277 353 71 18 chr3 174860445 174860615 -52663963 - MIR SINE MIR -6 256 78 180 0 0 0 chr3 174860699 174860719 -52663859 + (A)n Simple_repeat Simple_repeat 1 20 0 223 377 0 0 chr3 174861004 174861081 -52663497 - L2 LINE L2 -10 3303 3227 1989 86 15 89 chr3 174861379 174861716 -52662862 - AluSx SINE Alu 0 312 1 189 301 75 38 chr3 174862022 174862155 -52662423 - MIR3 SINE MIR -68 140 3 240 35 0 0 chr3 174862676 174862705 -52661873 + (TTTTTG)n Simple_repeat Simple_repeat 3 31 0 325 250 188 0 chr3 174863750 174863862 -52660716 - MER94 DNA DNA -1 133 1 1752 166 17 10 chr3 174863927 174864222 -52660356 + AluJo SINE Alu 1 297 -15 457 272 31 22 chr3 174864500 174864728 -52659850 - L1ME4a LINE L1 -177 5944 5715 288 333 87 0 chr3 174864957 174865095 -52659483 + L2 LINE L2 2294 2443 -871 490 360 166 17 chr3 174865155 174865772 -52658806 + L2 LINE L2 2578 3272 0 1296 154 61 27 chr3 174865901 174866254 -52658324 - Charlie5 DNA MER1_type -1 2623 2255 1982 149 0 3 chr3 174866254 174866556 -52658022 + AluJo SINE Alu 1 301 -11 1296 154 61 27 chr3 174866556 174866578 -52658000 - Charlie5 DNA MER1_type -369 2255 2235 22 0 0 0 chr3 174866598 174866620 -52657958 + AT_rich Low_complexity Low_complexity 1 22 0 2098 133 0 0 chr3 174866622 174866922 -52657656 + AluSx SINE Alu 1 300 -12 519 191 14 57 chr3 174866922 174866959 -52657619 - MER3 DNA MER1_type 0 162 125 1980 159 3 0 chr3 174866959 174867255 -52657323 + AluJo SINE Alu 1 297 -15 519 191 14 57 chr3 174867255 174867358 -52657220 - MER3 DNA MER1_type -37 125 28 241 220 0 0 chr3 174868022 174868072 -52656506 + CT-rich Low_complexity Low_complexity 2 51 0 2415 93 0 0 chr3 174868507 174868817 -52655761 + AluY SINE Alu 1 310 -1 684 225 85 10 chr3 174868860 174869060 -52655518 - MER58C DNA MER1_type 0 215 1 637 273 118 25 chr3 174869474 174869695 -52654883 - MIR SINE MIR 0 262 16 1001 200 115 0 chr3 174869695 174869895 -52654683 - MER58A DNA MER1_type 0 224 2 637 273 118 25 chr3 174869895 174869911 -52654667 - MIR SINE MIR -246 16 3 522 256 160 0 chr3 174869904 174870060 -52654518 - MER5A DNA MER1_type 0 189 9 * 654 341 93 43 chr3 174870198 174870981 -52653597 + L2 LINE L2 2389 3220 -93 414 299 111 18 chr3 174871122 174871339 -52653239 - MIR SINE MIR -20 242 6 2793 16 0 0 chr3 174871622 174871930 -52652648 - AluY SINE Alu -3 308 1 397 347 12 0 chr3 174872692 174872859 -52651719 - MER117 DNA MER1_type 0 197 29 321 296 30 0 chr3 174873951 174874083 -52650495 + L1ME3 LINE L1 4620 4755 -1391 2096 114 7 7 chr3 174874124 174874414 -52650164 + AluSx SINE Alu 1 290 -22 642 284 37 0 chr3 174874866 174875084 -52649494 + L1ME3 LINE L1 5848 6073 -89 207 100 0 0 chr3 174875132 174875162 -52649416 + (CA)n Simple_repeat Simple_repeat 1 30 0 271 328 8 8 chr3 174875230 174875364 -52649214 + HAL1 LINE L1 1391 1524 -983 413 195 167 70 chr3 174875555 174875641 -52648937 - Charlie4a DNA MER1_type -1652 309 233 1985 109 25 11 chr3 174875641 174875924 -52648654 + AluSx SINE Alu 1 287 -25 413 195 167 70 chr3 174875924 174876052 -52648526 - Charlie4a DNA MER1_type -1728 233 74 377 287 70 38 chr3 174876061 174876218 -52648360 + MIR SINE MIR 35 196 -66 720 178 132 0 chr3 174877210 174877362 -52647216 - MER7A DNA MER2_type -175 171 2 10195 96 7 1 chr3 174877394 174878830 -52645748 - THE1A-int LTR MaLR -135 1445 1 1226 99 28 0 chr3 174878830 174879012 -52645566 - THE1A LTR MaLR 0 355 169 2044 97 0 0 chr3 174879012 174879269 -52645309 - AluSq SINE Alu -56 257 1 529 161 62 197 chr3 174879298 174879572 -52645006 - MER21B LTR ERV1 -623 240 4 185 342 53 53 chr3 174879592 174879744 -52644834 - L2 LINE L2 -743 2571 2420 1731 225 65 103 chr3 174880027 174880748 -52643830 - LTR8A LTR ERV1 0 727 34 227 277 0 15 chr3 174880906 174880971 -52643607 + MLT-int LTR MaLR 292 355 -1380 1946 173 0 10 chr3 174881451 174881764 -52642814 - AluSx SINE Alu -2 310 1 731 246 118 103 chr3 174882541 174883073 -52641505 + MLT1G1 LTR MaLR 3 595 0 2736 287 72 27 chr3 174883976 174884911 -52639667 + L2 LINE L2 1915 2929 -384 830 134 8 15 chr3 174884911 174885045 -52639533 - FLAM_C SINE Alu 0 133 1 2736 287 72 27 chr3 174885045 174885446 -52639132 + L2 LINE L2 2929 3310 -3 1035 221 36 40 chr3 174885874 174886123 -52638455 + AluJo SINE Alu 42 289 -23 24 32 0 0 chr3 174886673 174886704 -52637874 + AT_rich Low_complexity Low_complexity 1 31 0 365 379 0 9 chr3 174887240 174887356 -52637222 + MIR SINE MIR 19 133 -75 1935 79 8 0 chr3 174887730 174887983 -52636595 + L1PA7 LINE L1 5900 6154 0 2446 60 0 7 chr3 174887990 174888289 -52636289 + AluY SINE Alu 1 297 -14 350 285 16 32 chr3 174888693 174888816 -52635762 - L2 LINE L2 0 3313 3193 39 50 0 0 chr3 174889787 174889847 -52634731 + AT_rich Low_complexity Low_complexity 1 60 0 262 238 25 12 chr3 174890048 174890128 -52634450 + MIR SINE MIR 133 213 -49 1369 106 0 0 chr3 174890354 174890533 -52634045 + AluSp SINE Alu 135 313 0 1391 203 24 38 chr3 174890628 174890918 -52633660 - AluJo SINE Alu -26 286 1 235 348 95 0 chr3 174891293 174891426 -52633152 + MIR SINE MIR 43 186 -67 1833 134 47 30 chr3 174892950 174893248 -52631330 + AluJb SINE Alu 1 303 -9 865 303 182 4 chr3 174893643 174894144 -52630434 + L2 LINE L2 2185 2774 -540 2253 120 0 0 chr3 174894152 174894444 -52630134 + AluSq SINE Alu 1 292 -21 425 363 115 16 chr3 174894552 174894741 -52629837 + L2 LINE L2 2926 3095 -218 2366 154 13 0 chr3 174894741 174895124 -52629454 - MLT1B LTR MaLR -1 389 2 425 363 115 16 chr3 174895124 174895256 -52629322 + L2 LINE L2 3095 3279 -34 1674 145 88 26 chr3 174895380 174895731 -52628847 + THE1C LTR MaLR 1 373 -2 37 39 0 0 chr3 174895743 174895794 -52628784 + AT_rich Low_complexity Low_complexity 1 51 0 35358 61 6 13 chr3 174895980 174901683 -52622895 + L1PA5 LINE L1 495 6154 0 371 292 71 0 chr3 174901748 174901861 -52622717 + L2 LINE L2 3193 3313 0 29 84 0 0 chr3 174902411 174902482 -52622096 + AT_rich Low_complexity Low_complexity 1 71 0 23 33 0 0 chr3 174902915 174902945 -52621633 + AT_rich Low_complexity Low_complexity 1 30 0 607 258 26 38 chr3 174903028 174903292 -52621286 + L1MA9 LINE L1 5072 5332 -814 741 158 0 18 chr3 174903299 174903456 -52621122 + FLAM_C SINE Alu 9 163 0 1489 133 20 37 chr3 174903456 174903750 -52620828 + L1MA9 LINE L1 5322 5610 -702 1680 144 18 25 chr3 174903862 174904189 -52620389 + L1MA9 LINE L1 5572 5896 -416 660 234 86 41 chr3 174904465 174904891 -52619687 - MLT1G3 LTR MaLR -11 584 54 1905 114 55 7 chr3 174904903 174905192 -52619386 - AluSx SINE Alu -9 303 1 2082 131 0 0 chr3 174906092 174906427 -52618151 + AluSx SINE Alu 1 335 0 510 253 44 38 chr3 174906557 174906715 -52617863 - L2 LINE L2 -3 3310 3152 2373 188 12 86 chr3 174906783 174906942 -52617636 - MLT2B3 LTR ERVL -2 552 383 216 0 0 0 chr3 174906942 174906966 -52617612 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 1587 102 51 0 chr3 174906966 174907201 -52617377 - L1PB1 LINE L1 -11 6140 5894 2373 188 12 86 chr3 174907201 174907334 -52617244 - MLT2B3 LTR ERVL -170 384 243 7933 62 6 3 chr3 174907334 174908338 -52616240 + LTR13 LTR ERVK 1 1007 0 2373 188 12 86 chr3 174908338 174908639 -52615939 - MLT2B3 LTR ERVL -311 243 1 249 207 17 0 chr3 174908923 174908981 -52615597 + LTR33 LTR ERVL 401 459 -62 214 288 0 17 chr3 174909116 174909175 -52615403 - L2 LINE L2 -252 3061 3004 25 31 0 0 chr3 174909190 174909222 -52615356 + AT_rich Low_complexity Low_complexity 1 32 0 356 246 8 0 chr3 174909303 174909425 -52615153 + (TA)n Simple_repeat Simple_repeat 1 123 0 311 287 68 57 chr3 174909438 174909658 -52614920 - L1ME2 LINE L1 -230 5940 5712 2005 122 35 11 chr3 174909934 174910221 -52614357 - AluSg SINE Alu -16 294 1 1299 120 16 0 chr3 174910916 174911100 -52613478 - AluSg/x SINE Alu -16 296 110 364 278 57 42 chr3 174911280 174911438 -52613140 + L2 LINE L2 2344 2507 -807 2117 111 9 32 chr3 174911438 174911754 -52612824 + AluSx SINE Alu 1 309 -3 364 278 57 42 chr3 174911754 174911807 -52612771 + L2 LINE L2 2507 2558 -756 987 179 12 0 chr3 174911908 174912076 -52612502 - AluSg/x SINE Alu -10 302 133 434 298 121 26 chr3 174912309 174912576 -52612002 - L2 LINE L2 -845 2469 2177 487 252 30 15 chr3 174912576 174912707 -52611871 + MER5B DNA MER1_type 1 133 -45 2025 129 4 0 chr3 174912720 174912998 -52611580 + AluSx SINE Alu 6 284 -28 807 145 0 0 chr3 174912881 174912998 -52611580 + AluSg/x SINE Alu 166 309 0 244 0 0 0 chr3 174912998 174913025 -52611553 + (CAAA)n Simple_repeat Simple_repeat 2 60 0 2053 136 7 13 chr3 174913200 174913336 -52611242 + AluSx SINE Alu 1 136 -176 1997 120 65 0 chr3 174913336 174913456 -52611122 + AluSq SINE Alu 1 112 -201 188 35 35 0 chr3 174913456 174913485 -52611093 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 1997 120 65 0 chr3 174913485 174913656 -52610922 + AluSq SINE Alu 112 311 -2 2053 136 7 13 chr3 174913656 174913829 -52610749 + AluSx SINE Alu 136 308 -4 2366 53 0 0 chr3 174914548 174914862 -52609716 - AluY SINE Alu 0 314 1 2463 89 0 6 chr3 174915792 174916107 -52608471 - AluSp SINE Alu 0 313 1 2410 79 0 0 chr3 174916116 174916420 -52608158 - AluY SINE Alu -7 304 1 702 193 0 29 chr3 174917410 174917550 -52607028 + AluJo SINE Alu 1 136 -176 2080 130 13 0 chr3 174917573 174917874 -52606704 + AluSx SINE Alu 1 305 -7 321 100 0 0 chr3 174917982 174918032 -52606546 + (CA)n Simple_repeat Simple_repeat 1 50 0 22 0 0 0 chr3 174918219 174918241 -52606337 + AT_rich Low_complexity Low_complexity 1 22 0 803 169 0 0 chr3 174918241 174918359 -52606219 - AluJb SINE Alu -194 118 1 1769 129 17 53 chr3 174918517 174918819 -52605759 + AluJb SINE Alu 11 301 -11 443 131 176 25 chr3 174918955 174919121 -52605457 + LTR29 LTR ERV1 1 275 -347 * 756 173 89 32 chr3 174919118 174919394 -52605184 + LTR49 LTR ERV1 313 595 0 4141 110 2 0 chr3 174919445 174920036 -52604542 + L1PA13 LINE L1 5565 6156 -7 241 47 47 0 chr3 174920932 174920975 -52603603 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 1741 189 4 0 chr3 174920977 174921257 -52603321 - AluJb SINE Alu -31 281 1 595 198 0 9 chr3 174921289 174921395 -52603183 + FLAM_C SINE Alu 14 118 -25 447 19 0 0 chr3 174921401 174921453 -52603125 + (GAAAA)n Simple_repeat Simple_repeat 2 53 0 2590 45 3 0 chr3 174921840 174922149 -52602429 + AluY SINE Alu 1 310 -1 723 323 25 4 chr3 174922235 174922470 -52602108 + MIR SINE MIR 11 250 -12 201 342 0 13 chr3 174922516 174922592 -52601986 + L3 LINE CR1 1389 1463 -114 403 306 30 8 chr3 174922596 174922730 -52601848 + MIR SINE MIR 18 154 -108 239 226 57 0 chr3 174922785 174922838 -52601740 - L2 LINE L2 -12 3260 3205 201 121 0 0 chr3 174922842 174922875 -52601703 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 326 341 98 0 chr3 174923040 174923163 -52601415 - MER5B DNA MER1_type -43 135 1 731 152 230 18 chr3 174923916 174924105 -52600473 - AluJb SINE Alu 0 308 85 2340 75 0 3 chr3 174924878 174925171 -52599407 + AluSc SINE Alu 1 292 -17 2045 139 21 0 chr3 174925539 174925826 -52598752 + AluSx SINE Alu 1 293 -19 216 0 0 0 chr3 174925874 174925898 -52598680 + (GA)n Simple_repeat Simple_repeat 2 25 0 339 289 148 0 chr3 174926098 174926240 -52598338 + MLT1L LTR MaLR 289 451 -164 30 62 0 25 chr3 174926453 174926508 -52598070 + AT_rich Low_complexity Low_complexity 1 55 -23 2227 114 0 7 chr3 174926508 174926816 -52597762 - AluSx SINE Alu -6 306 1 30 62 0 25 chr3 174926816 174926840 -52597738 + AT_rich Low_complexity Low_complexity 55 78 0 354 71 18 0 chr3 174927041 174927105 -52597473 - Alu SINE Alu -242 57 1 245 292 62 31 chr3 174927177 174927261 -52597317 + L2 LINE L2 3214 3303 -10 2366 75 0 43 chr3 174927261 174927583 -52596995 + AluY SINE Alu 1 308 -3 245 292 62 31 chr3 174927583 174927594 -52596984 + L2 LINE L2 3303 3312 -1 1420 194 12 69 chr3 174928114 174928433 -52596145 + AluJo SINE Alu 1 301 -11 42 82 0 0 chr3 174929457 174929555 -52595023 + AT_rich Low_complexity Low_complexity 1 98 0 332 194 0 15 chr3 174929557 174929624 -52594954 - L1MD1 LINE L1 -46 6196 6131 35 0 0 0 chr3 174929635 174929670 -52594908 + AT_rich Low_complexity Low_complexity 1 35 0 1142 198 59 46 chr3 174929674 174929725 -52594853 - L1MD2 LINE L1 -121 6238 6189 2005 115 62 0 chr3 174929725 174930013 -52594565 - AluY SINE Alu -5 306 1 1142 198 59 46 chr3 174930013 174930284 -52594294 - L1MD2 LINE L1 -170 6189 5912 2044 97 0 24 chr3 174930306 174930619 -52593959 - AluSx SINE Alu 0 306 1 1092 168 115 4 chr3 174930619 174930863 -52593715 - L1MD2 LINE L1 -575 5784 5514 543 284 45 8 chr3 174930963 174931097 -52593481 + MIR SINE MIR 46 184 -78 1968 154 0 23 chr3 174931553 174931858 -52592720 - AluJb SINE Alu -14 298 1 1470 83 0 0 chr3 174932100 174932280 -52592298 - AluSg/x SINE Alu -19 291 112 2450 87 0 3 chr3 174932334 174932646 -52591932 + AluSq SINE Alu 1 311 -2 24 32 0 0 chr3 174935015 174935046 -52589532 + AT_rich Low_complexity Low_complexity 1 31 0 786 314 42 22 chr3 174935075 174935435 -52589143 + MLT1J LTR MaLR 1 367 -144 1019 174 0 6 chr3 174935447 174935634 -52588944 + AluJb SINE Alu 125 310 0 261 180 0 0 chr3 174935756 174935806 -52588772 + (TATATG)n Simple_repeat Simple_repeat 4 53 0 2256 108 0 0 chr3 174935854 174936150 -52588428 + AluSx SINE Alu 1 296 -16 539 106 24 0 chr3 174936296 174936381 -52588197 + MLT1J LTR MaLR 401 487 -55 211 358 104 20 chr3 174936702 174936903 -52587675 - MIR SINE MIR -7 255 38 1530 170 150 28 chr3 174936989 174937342 -52587236 - MSTD LTR MaLR 0 396 1 293 223 107 8 chr3 174937631 174937752 -52586826 - MER58C DNA MER1_type -3 212 80 2192 122 0 0 chr3 174938187 174938481 -52586097 - AluSq SINE Alu -19 294 1 245 153 34 0 chr3 174940155 174940214 -52584364 + T-rich Low_complexity Low_complexity 5 65 0 2045 127 30 3 chr3 174940305 174940605 -52583973 - AluSq SINE Alu -5 308 1 2065 74 18 109 chr3 174941753 174942091 -52582487 + AluSx SINE Alu 6 312 0 304 303 0 0 chr3 174942091 174942180 -52582398 - L1MC4 LINE L1 -1339 6703 6615 29 47 0 0 chr3 174942267 174942310 -52582268 + AT_rich Low_complexity Low_complexity 1 43 0 903 126 7 0 chr3 174942320 174942455 -52582123 + AluJo SINE Alu 1 136 -176 309 287 88 73 chr3 174942458 174942546 -52582032 + HAL1b LINE L1 109 194 -1154 2318 91 0 25 chr3 174942546 174942865 -52581713 + AluY SINE Alu 1 311 0 309 287 88 73 chr3 174942865 174943037 -52581541 + HAL1b LINE L1 194 373 -975 399 208 10 20 chr3 174943041 174943142 -52581436 + L1ME3A LINE L1 6037 6136 -34 570 290 90 22 chr3 174943204 174943525 -52581053 + L1MC4a LINE L1 2435 2777 -3369 2314 89 3 0 chr3 174943556 174943847 -52580731 + AluSp SINE Alu 1 292 -21 562 311 113 52 chr3 174943857 174944301 -52580277 + L1MC4a LINE L1 3505 3975 -2171 585 284 88 12 chr3 174944535 174944944 -52579634 + L1MC4a LINE L1 4102 4541 -1605 646 325 23 16 chr3 174945027 174945332 -52579246 + MER93a LTR ERV1 67 373 -29 667 204 49 0 chr3 174945335 174945508 -52579070 + AluJo SINE Alu 134 313 0 428 226 54 0 chr3 174945725 174945852 -52578726 + L1ME LINE L1 5701 5837 -284 695 344 54 29 chr3 174945893 174946373 -52578205 + L1MC4a LINE L1 4735 5226 -920 745 281 43 86 chr3 174946432 174946538 -52578040 + L1MC4a LINE L1 5307 5416 -2392 1753 187 3 16 chr3 174946538 174946674 -52577904 + AluJo SINE Alu 1 137 -175 2370 100 0 6 chr3 174946674 174946985 -52577593 + AluSq SINE Alu 1 309 -4 1753 187 3 16 chr3 174946985 174947153 -52577425 + AluJo SINE Alu 137 301 -11 745 281 43 86 chr3 174947153 174947697 -52576881 + L1MC4a LINE L1 5416 5929 -1879 1178 106 0 0 chr3 174948219 174948370 -52576208 - AluSg/x SINE Alu -17 293 143 387 333 149 0 chr3 174948486 174948660 -52575918 + MIR SINE MIR 27 226 -36 739 204 6 0 chr3 174948983 174949140 -52575438 + LTR54B LTR ERV1 1 158 -340 917 116 63 58 chr3 174949210 174949400 -52575178 + LTR54 LTR ERV1 320 510 0 264 362 0 13 chr3 174949648 174949797 -52574781 + MLT1L LTR MaLR 469 615 0 1981 104 4 4 chr3 174950376 174950644 -52573934 + AluSq SINE Alu 1 268 -45 25 75 0 0 chr3 174950644 174950697 -52573881 + AT_rich Low_complexity Low_complexity 1 53 0 2251 98 3 7 chr3 174950968 174951265 -52573313 + AluSx SINE Alu 1 296 -16 38 0 0 0 chr3 174951267 174951305 -52573273 + AT_rich Low_complexity Low_complexity 1 38 0 197 260 52 52 chr3 174951380 174951476 -52573102 + MIR SINE MIR 167 262 0 2315 113 0 0 chr3 174951477 174951778 -52572800 - AluSx SINE Alu -11 301 1 1911 139 10 26 chr3 174952574 174952877 -52571701 + AluJo SINE Alu 5 302 -10 2263 105 7 0 chr3 174954019 174954314 -52570264 + AluSq SINE Alu 1 297 -16 1960 135 3 3 chr3 174955007 174955295 -52569283 + AluJo SINE Alu 6 293 -19 2341 101 3 0 chr3 174955297 174955605 -52568973 + AluY SINE Alu 1 309 -2 1161 82 6 16 chr3 174955639 174955654 -52568924 + (GAAA)n Simple_repeat Simple_repeat 1 194 0 1161 82 6 16 chr3 174955654 174955836 -52568742 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 525 204 32 57 chr3 174956127 174956284 -52568294 - MIR SINE MIR -25 237 85 398 341 35 18 chr3 174956641 174956867 -52567711 + L2 LINE L2 2700 2929 -385 322 322 82 14 chr3 174956870 174957016 -52567562 + MER5A DNA MER1_type 4 159 -30 234 304 50 75 chr3 174957449 174957567 -52567011 - L2 LINE L2 -212 3060 2946 2265 105 0 3 chr3 174957567 174957872 -52566706 + AluSc SINE Alu 1 304 -5 234 304 50 75 chr3 174957872 174957914 -52566664 - L2 LINE L2 -326 2946 2904 209 189 0 0 chr3 174958164 174958201 -52566377 + (TG)n Simple_repeat Simple_repeat 2 38 0 446 344 102 9 chr3 174958321 174958536 -52566042 + MIR SINE MIR 7 241 -21 232 243 46 84 chr3 174958539 174958737 -52565841 + MIR SINE MIR 5 249 -13 245 196 0 0 chr3 174959393 174959444 -52565134 + T-rich Low_complexity Low_complexity 1 51 0 2145 123 0 0 chr3 174959609 174959902 -52564676 + AluSx SINE Alu 1 293 -19 2180 118 16 7 chr3 174959939 174960245 -52564333 + AluSx SINE Alu 1 309 -3 251 219 47 16 chr3 174960941 174961005 -52563573 + AluJ/FRAM SINE Alu 228 293 -9 603 179 172 7 chr3 174962017 174962162 -52562416 + MER96 DNA MER1_type 5 173 -2 192 26 53 26 chr3 174962797 174962835 -52561743 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 2081 119 11 0 chr3 174962839 174963117 -52561461 - AluSx SINE Alu -21 291 11 1882 141 0 58 chr3 174963642 174963778 -52560800 + AluSx SINE Alu 1 143 -169 2367 89 0 16 chr3 174963778 174964094 -52560484 + AluSx SINE Alu 1 311 -1 1882 141 0 58 chr3 174964094 174964283 -52560295 + AluSx SINE Alu 143 307 -5 242 200 25 38 chr3 174964633 174964713 -52559865 - L1ME4a LINE L1 -1 6120 6042 280 171 0 29 chr3 174964716 174964786 -52559792 + GA-rich Low_complexity Low_complexity 4 71 0 23 0 0 0 chr3 174964943 174964966 -52559612 + AT_rich Low_complexity Low_complexity 1 23 0 290 253 193 33 chr3 174965242 174965392 -52559186 + L2 LINE L2 3120 3293 -20 221 190 0 17 chr3 174966020 174966078 -52558500 + (TAAA)n Simple_repeat Simple_repeat 3 59 0 318 347 24 64 chr3 174966165 174966437 -52558141 - L1M4c LINE L1 -1121 1622 1341 1985 154 3 3 chr3 174966437 174966730 -52557848 - AluJb SINE Alu -19 293 1 318 347 24 64 chr3 174966730 174966898 -52557680 - L1M4c LINE L1 -1402 1341 989 1773 174 0 3 chr3 174966921 174967208 -52557370 - AluJb SINE Alu -26 286 1 1905 131 3 20 chr3 174967943 174968249 -52556329 - AluSx SINE Alu -1 311 11 2273 95 3 0 chr3 174969038 174969349 -52555229 + AluSp SINE Alu 2 313 0 617 141 0 31 chr3 174969817 174969945 -52554633 + (GGGA)n Simple_repeat Simple_repeat 4 127 0 455 266 146 6 chr3 174970832 174970990 -52553588 - MIR SINE MIR -5 257 78 1549 111 154 39 chr3 174971437 174971717 -52552861 - AluSx SINE Alu 0 312 1 22 0 0 0 chr3 174971929 174971951 -52552627 + AT_rich Low_complexity Low_complexity 1 22 0 2052 109 14 3 chr3 174971955 174972265 -52552313 + AluSx SINE Alu 1 313 0 927 115 39 0 chr3 174972351 174972481 -52552097 + AluJb SINE Alu 1 135 -177 208 288 0 25 chr3 174972541 174972621 -52551957 + CT-rich Low_complexity Low_complexity 1 78 0 197 222 0 0 chr3 174972869 174972905 -52551673 + MER5B DNA MER1_type 20 55 -123 243 240 0 0 chr3 174972906 174972956 -52551622 + Tigger5 DNA MER2_type 1 50 -2273 * 302 169 17 17 chr3 174972943 174973002 -52551576 + Tigger5 DNA MER2_type 2265 2323 0 2248 84 76 62 chr3 174973076 174973150 -52551428 - THE1B LTR MaLR -2 362 291 2212 92 0 20 chr3 174973150 174973453 -52551125 + AluSg SINE Alu 1 297 -13 2248 84 76 62 chr3 174973453 174973735 -52550843 - THE1B LTR MaLR -73 291 1 768 221 16 32 chr3 174974160 174974350 -52550228 - MIR SINE MIR 0 262 76 29 0 0 0 chr3 174974356 174974385 -52550193 + AT_rich Low_complexity Low_complexity 1 29 0 827 183 0 8 chr3 174974387 174974513 -52550065 - FLAM_C SINE Alu -17 126 2 1625 135 13 100 chr3 174974567 174974912 -52549666 - AluSx SINE Alu 0 319 2 1335 102 10 35 chr3 174975226 174975423 -52549155 + AluSc SINE Alu 103 294 -15 308 336 95 7 chr3 174975455 174975592 -52548986 + L1MC/D LINE L1 5464 5612 -2196 934 145 53 0 chr3 174975596 174975748 -52548830 - AluSg/x SINE Alu -16 294 135 2182 120 0 0 chr3 174976269 174976560 -52548018 - AluSq SINE Alu -22 291 1 517 182 128 89 chr3 174976570 174976773 -52547805 - L1ME3 LINE L1 -8 6154 5944 1981 125 17 14 chr3 174977024 174977320 -52547258 - AluSx SINE Alu -3 309 13 2485 77 0 6 chr3 174977554 174977865 -52546713 + AluY SINE Alu 1 309 -2 2093 96 14 7 chr3 174978128 174978435 -52546143 + AluSx SINE Alu 5 313 0 927 115 39 0 chr3 174978521 174978651 -52545927 + AluJb SINE Alu 1 135 -177 185 125 0 62 chr3 174978712 174978760 -52545818 + (TCTCCC)n Simple_repeat Simple_repeat 4 48 0 436 250 0 0 chr3 174978787 174978867 -52545711 - FLAM_A SINE Alu -59 83 4 191 284 28 64 chr3 174979016 174979125 -52545453 - MIR SINE MIR -46 216 112 2165 127 0 10 chr3 174979414 174979728 -52544850 + AluSq SINE Alu 1 311 -2 308 250 115 45 chr3 174979737 174979893 -52544685 - L1ME4a LINE L1 -17 6104 5938 255 130 0 0 chr3 174979923 174979969 -52544609 + LTR66 LTR ERVL 394 439 -171 1909 145 14 7 chr3 174979992 174980289 -52544289 - AluJo SINE Alu -13 299 1 1049 247 104 51 chr3 174980375 174980892 -52543686 - L1ME3A LINE L1 -11 6159 5598 1956 145 6 22 chr3 174980892 174981209 -52543369 - AluJb SINE Alu 0 312 1 1049 247 104 51 chr3 174981209 174981331 -52543247 - L1ME3A LINE L1 -572 5598 5484 1020 66 0 0 chr3 174981674 174981795 -52542783 + AluSg/x SINE Alu 170 290 -22 1762 150 14 7 chr3 174982106 174982386 -52542192 - AluJo SINE Alu -10 302 21 2003 110 0 76 chr3 174984392 174984487 -52540091 + AluSx SINE Alu 1 102 -210 2186 100 0 3 chr3 174984487 174984786 -52539792 + AluY SINE Alu 1 298 -13 2003 110 0 76 chr3 174984786 174985018 -52539560 + AluSx SINE Alu 102 303 -9 501 209 27 61 chr3 174986403 174986551 -52538027 - MIR SINE MIR -56 206 64 2021 110 3 3 chr3 174986590 174986916 -52537662 - AluSx SINE Alu 0 326 1 2348 101 3 0 chr3 174986919 174987227 -52537351 - AluSp SINE Alu -4 309 1 630 203 8 17 chr3 174987372 174987490 -52537088 + FLAM_A SINE Alu 2 118 -15 32 43 0 0 chr3 174987492 174987538 -52537040 + AT_rich Low_complexity Low_complexity 1 46 0 2889 172 71 8 chr3 174988032 174988554 -52536024 - MER21A LTR ERV1 0 931 377 1450 129 27 30 chr3 174988557 174988820 -52535758 - MER21A LTR ERV1 -665 266 5 714 180 41 16 chr3 174988844 174988966 -52535612 + AluJb SINE Alu 2 126 -186 2216 103 3 3 chr3 174988984 174989284 -52535294 + AluSc SINE Alu 1 300 -9 415 285 8 31 chr3 174989292 174989422 -52535156 - MIR SINE MIR -108 154 28 2313 77 10 3 chr3 174989604 174989901 -52534677 + AluY SINE Alu 1 299 -12 366 291 47 38 chr3 174990031 174990190 -52534388 + L2 LINE L2 2344 2507 -807 2092 107 9 35 chr3 174990190 174990507 -52534071 + AluSx SINE Alu 1 309 -3 366 291 47 38 chr3 174990507 174990560 -52534018 + L2 LINE L2 2507 2558 -756 973 179 12 0 chr3 174990661 174990829 -52533749 - AluSg/x SINE Alu -10 302 133 431 290 121 26 chr3 174991062 174991329 -52533249 - L2 LINE L2 -845 2469 2177 497 244 30 15 chr3 174991329 174991460 -52533118 + MER5B DNA MER1_type 1 133 -45 1988 133 4 0 chr3 174991473 174991778 -52532800 + AluSx SINE Alu 6 311 0 2043 136 7 13 chr3 174991953 174992089 -52532489 + AluSx SINE Alu 1 136 -176 1938 124 69 0 chr3 174992089 174992208 -52532370 + AluSq SINE Alu 1 110 -203 188 35 35 0 chr3 174992208 174992237 -52532341 + (CAAAA)n Simple_repeat Simple_repeat 3 32 0 1938 124 69 0 chr3 174992237 174992408 -52532170 + AluSq SINE Alu 110 311 -2 2043 136 7 13 chr3 174992408 174992581 -52531997 + AluSx SINE Alu 136 308 -4 2396 53 0 0 chr3 174993300 174993606 -52530972 - AluY SINE Alu 0 306 1 2465 89 0 6 chr3 174994536 174994851 -52529727 - AluSp SINE Alu 0 313 1 2423 79 0 0 chr3 174994860 174995164 -52529414 - AluY SINE Alu -7 304 1 774 187 0 29 chr3 174996156 174996295 -52528283 + AluJo SINE Alu 2 136 -176 1998 122 4 0 chr3 174996318 174996588 -52527990 + AluSx SINE Alu 1 271 -41 183 42 0 0 chr3 174996596 174996620 -52527958 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 321 100 0 0 chr3 174996727 174996777 -52527801 + (CA)n Simple_repeat Simple_repeat 1 50 0 22 0 0 0 chr3 174996964 174996986 -52527592 + AT_rich Low_complexity Low_complexity 1 22 0 827 171 0 0 chr3 174996986 174997103 -52527475 - AluJb SINE Alu -194 118 2 1767 126 17 53 chr3 174997261 174997563 -52527015 + AluJb SINE Alu 11 301 -11 882 150 152 60 chr3 174997699 174998138 -52526440 + LTR29 LTR ERV1 1 622 0 4450 110 2 0 chr3 174998188 174998779 -52525799 + L1PA13 LINE L1 5565 6156 -7 241 47 47 0 chr3 174999675 174999718 -52524860 + (TTTG)n Simple_repeat Simple_repeat 2 46 0 1765 162 3 35 chr3 174999720 175000010 -52524568 - AluJb SINE Alu -31 281 1 2167 100 0 0 chr3 175000142 175000423 -52524155 + AluSq SINE Alu 1 281 -32 213 182 0 0 chr3 175000438 175000493 -52524085 + (TTCA)n Simple_repeat Simple_repeat 2 56 0 391 18 36 0 chr3 175000683 175000739 -52523839 + (TAGA)n Simple_repeat Simple_repeat 1 58 0 191 326 0 0 chr3 175000837 175000880 -52523698 + MIR SINE MIR 53 95 -167 607 278 122 13 chr3 175000942 175001172 -52523406 - MIR SINE MIR -5 257 3 239 222 32 16 chr3 175001419 175001482 -52523096 + MLT1K LTR MaLR 85 148 -440 1568 95 0 5 chr3 175002274 175002474 -52522104 - AluSx SINE Alu -113 199 1 1844 65 0 13 chr3 175003560 175003790 -52520788 - L1PA6 LINE L1 -7 6147 5921 2081 134 0 16 chr3 175003817 175004131 -52520447 + AluSx SINE Alu 3 311 -1 2112 132 10 0 chr3 175004653 175004956 -52519622 + AluSx SINE Alu 3 308 -4 30 69 0 0 chr3 175005091 175005149 -52519429 + AT_rich Low_complexity Low_complexity 1 58 0 1957 125 59 0 chr3 175005188 175005477 -52519101 - AluSq SINE Alu -7 306 1 229 374 37 0 chr3 175005512 175005619 -52518959 + MIR SINE MIR 38 148 -60 219 250 111 46 chr3 175006775 175006883 -52517695 - L3b LINE CR1 -146 1437 1323 2252 101 0 13 chr3 175007515 175007832 -52516746 - AluSq SINE Alu 0 313 1 947 67 0 0 chr3 175008075 175008194 -52516384 - AluY SINE Alu -13 298 180 1511 180 52 0 chr3 175009375 175009625 -52514953 + AluJo SINE Alu 9 271 -41 281 280 43 21 chr3 175009702 175009795 -52514783 - MIR SINE MIR -6 256 162 382 316 89 6 chr3 175009810 175009978 -52514600 + MIR SINE MIR 12 193 -69 2013 238 104 87 chr3 175010020 175010584 -52513994 - MER21B LTR ERV1 -57 806 224 2130 123 0 13 chr3 175010584 175010900 -52513678 - AluSx SINE Alu 0 312 1 2013 238 104 87 chr3 175010900 175011117 -52513461 - MER21B LTR ERV1 -639 224 12 1160 112 16 48 chr3 175011217 175011391 -52513187 + MLT1B LTR MaLR 12 190 -200 3629 155 25 65 chr3 175011391 175012109 -52512469 + LTR8 LTR ERV1 1 689 -2 1160 112 16 48 chr3 175012109 175012275 -52512303 + MLT1B LTR MaLR 190 390 0 914 304 108 51 chr3 175012865 175013042 -52511536 + L2 LINE L2 2511 2676 -637 2225 74 10 27 chr3 175013042 175013341 -52511237 - AluSq SINE Alu -19 294 1 914 304 108 51 chr3 175013341 175013920 -52510658 + L2 LINE L2 2676 3298 -15 1278 83 0 0 chr3 175014197 175014354 -52510224 + AluSq SINE Alu 1 157 -156 2406 96 0 0 chr3 175014552 175014855 -52509723 - AluSx SINE Alu -9 303 1 1024 213 0 0 chr3 175014858 175015041 -52509537 - 7SLRNA srpRNA srpRNA -136 184 2 672 236 20 26 chr3 175015051 175015246 -52509332 - L1ME3 LINE L1 -1 6161 5968 1588 176 11 25 chr3 175015820 175016099 -52508479 - AluJo SINE Alu -37 275 1 290 122 0 0 chr3 175016447 175016488 -52508090 - LTR8 LTR ERV1 -104 587 547 2216 107 3 3 chr3 175016553 175016852 -52507726 - AluSx SINE Alu -13 299 1 31 44 0 0 chr3 175016852 175016897 -52507681 + AT_rich Low_complexity Low_complexity 1 45 0 2274 96 33 0 chr3 175017430 175017731 -52506847 - AluSq SINE Alu -2 311 1 383 334 51 15 chr3 175018705 175018881 -52505697 - MIR3 SINE MIR -15 193 11 204 309 0 0 chr3 175019141 175019196 -52505382 - MIR SINE MIR -61 147 93 2306 76 7 0 chr3 175019249 175019539 -52505039 + AluSx SINE Alu 1 292 -20 2489 78 0 3 chr3 175019539 175019847 -52504731 + AluY SINE Alu 1 307 -4 2155 82 16 49 chr3 175020531 175020836 -52503742 - AluSx SINE Alu -17 295 1 252 0 0 0 chr3 175020890 175020918 -52503660 + (T)n Simple_repeat Simple_repeat 1 28 0 284 222 139 67 chr3 175021868 175022009 -52502569 - L2 LINE L2 -6 3307 3149 1668 171 52 3 chr3 175022009 175022295 -52502283 + AluSx SINE Alu 1 300 -12 284 222 139 67 chr3 175022295 175022333 -52502245 - L2 LINE L2 -164 3149 3115 1104 239 88 7 chr3 175022356 175022653 -52501925 - MER58B DNA MER1_type -1 340 20 392 268 98 33 chr3 175022688 175022841 -52501737 - L2 LINE L2 -228 3085 2923 824 139 0 23 chr3 175023284 175023413 -52501165 + FLAM_C SINE Alu 1 126 -7 987 201 0 11 chr3 175024752 175024931 -52499647 + MER45A DNA AcHobo 2 178 0 590 190 40 16 chr3 175025013 175025164 -52499414 - L1ME3A LINE L1 -208 5962 5815 212 192 0 96 chr3 175025222 175025295 -52499283 - L2 LINE L2 -649 2665 2600 832 273 21 60 chr3 175026294 175026576 -52498002 - MLT1F LTR MaLR -271 271 1 1288 124 0 0 chr3 175026624 175026802 -52497776 - AluSg/x SINE Alu -3 309 132 818 104 0 0 chr3 175026801 175026907 -52497671 + AluSg SINE Alu 24 129 -181 * 2207 120 0 7 chr3 175027037 175027345 -52497233 + AluSx SINE Alu 1 306 -6 26 64 0 0 chr3 175027353 175027400 -52497178 + AT_rich Low_complexity Low_complexity 1 47 0 391 293 66 54 chr3 175027480 175027759 -52496819 - MLT1L LTR MaLR -19 492 237 180 0 0 0 chr3 175027955 175027975 -52496603 + (TC)n Simple_repeat Simple_repeat 2 21 0 2044 139 21 0 chr3 175028027 175028314 -52496264 - AluSx SINE Alu -19 293 1 2383 75 0 3 chr3 175028682 175028975 -52495603 - AluSc SINE Alu -17 292 1 740 146 230 18 chr3 175029748 175029937 -52494641 + AluJb SINE Alu 85 308 0 289 341 98 0 chr3 175030690 175030813 -52493765 + MER5B DNA MER1_type 1 135 -43 201 121 0 0 chr3 175030978 175031011 -52493567 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 217 226 57 0 chr3 175031015 175031068 -52493510 + L2 LINE L2 3205 3260 -12 347 306 30 8 chr3 175031123 175031257 -52493321 - MIR SINE MIR -108 154 18 634 323 25 4 chr3 175031383 175031618 -52492960 - MIR SINE MIR -12 250 11 2645 45 3 0 chr3 175031704 175032013 -52492565 - AluY SINE Alu -1 310 1 492 18 0 0 chr3 175032400 175032457 -52492121 + (TTTTC)n Simple_repeat Simple_repeat 2 58 0 593 170 19 28 chr3 175032463 175032569 -52492009 - FLAM_C SINE Alu -25 118 14 1511 152 54 57 chr3 175032601 175032749 -52491829 + AluJo SINE Alu 1 148 -164 2296 119 0 0 chr3 175032749 175033059 -52491519 + AluSx SINE Alu 1 310 -2 1511 152 54 57 chr3 175033059 175033206 -52491372 + AluJo SINE Alu 148 295 -17 2291 98 0 0 chr3 175033207 175033504 -52491074 + AluSx SINE Alu 1 297 -15 2013 106 6 64 chr3 175033598 175033740 -52490838 + AluSx SINE Alu 1 117 -195 2343 100 10 0 chr3 175033740 175034050 -52490528 + AluSp SINE Alu 1 313 0 2013 106 6 64 chr3 175034050 175034219 -52490359 + AluSx SINE Alu 117 294 -18 2300 66 28 0 chr3 175034615 175034901 -52489677 + AluY SINE Alu 1 294 -17 2179 98 0 16 chr3 175035031 175035348 -52489230 + AluSq SINE Alu 1 312 -1 2142 111 0 17 chr3 175035887 175036184 -52488394 + AluSq SINE Alu 1 292 -21 267 259 12 12 chr3 175036653 175036734 -52487844 + MLT1K LTR MaLR 481 561 -27 333 250 48 0 chr3 175036741 175036845 -52487733 + MIR SINE MIR 102 210 -52 274 276 130 8 chr3 175037429 175037552 -52487026 - MIR3 SINE MIR -50 158 21 659 210 78 78 chr3 175037791 175038010 -52486568 - MER20 DNA MER1_type 0 219 1 2391 94 3 0 chr3 175038534 175038842 -52485736 - AluSg SINE Alu -1 309 1 30 0 0 0 chr3 175039065 175039095 -52485483 + AT_rich Low_complexity Low_complexity 1 30 0 204 313 36 36 chr3 175040055 175040138 -52484440 - MER5A DNA MER1_type -73 116 34 1817 110 34 15 chr3 175040241 175040504 -52484074 + AluSx SINE Alu 35 302 -10 2118 108 4 0 chr3 175040874 175041153 -52483425 + AluSx SINE Alu 1 280 -32 235 70 0 47 chr3 175041153 175041196 -52483382 + (GGAA)n Simple_repeat Simple_repeat 2 42 0 403 194 19 0 chr3 175041225 175041328 -52483250 + GA-rich Low_complexity Low_complexity 4 108 0 1609 183 21 11 chr3 175041801 175041931 -52482647 + AluJb SINE Alu 1 128 -184 2321 84 3 3 chr3 175041931 175042229 -52482349 + AluY SINE Alu 1 298 -13 1609 183 21 11 chr3 175042229 175042382 -52482196 + AluJb SINE Alu 128 287 -25 250 176 83 111 chr3 175042878 175042944 -52481634 + MLT1L LTR MaLR 505 568 -47 2287 111 39 28 chr3 175042944 175043304 -52481274 - THE1B LTR MaLR 0 364 1 250 176 83 111 chr3 175043304 175043345 -52481233 + MLT1L LTR MaLR 568 609 -6 2009 112 20 46 chr3 175044197 175044501 -52480077 - AluSx SINE Alu -16 296 1 755 189 16 0 chr3 175044548 175044675 -52479903 + FLAM_C SINE Alu 1 129 -4 24 0 0 0 chr3 175045740 175045764 -52478814 + AT_rich Low_complexity Low_complexity 1 24 0 255 282 84 0 chr3 175045923 175046065 -52478513 + L1ME4a LINE L1 5967 6120 -1 2337 107 7 0 chr3 175046073 175046381 -52478197 - AluSq SINE Alu -3 310 1 1950 156 0 0 chr3 175047536 175047811 -52476767 + AluSx SINE Alu 1 275 -37 860 231 70 25 chr3 175048020 175048219 -52476359 + MER58A DNA MER1_type 2 209 -15 1995 124 30 27 chr3 175048560 175048858 -52475720 - AluSx SINE Alu -12 300 2 4252 105 206 96 chr3 175049169 175050547 -52474031 - pTR5 LTR ERV1 0 2438 743 2365 85 0 3 chr3 175050612 175050907 -52473671 - AluSc SINE Alu -14 295 2 2189 118 0 3 chr3 175051645 175051941 -52472637 - AluSg SINE Alu -15 295 1 201 324 74 19 chr3 175052572 175052680 -52471898 - L2 LINE L2 -3 3269 3156 2391 98 0 0 chr3 175052825 175053122 -52471456 + AluSx SINE Alu 1 297 -15 306 231 0 0 chr3 175053580 175053645 -52470933 - MIR SINE MIR -111 151 87 1176 266 254 11 chr3 175053724 175054276 -52470302 - MER115 DNA AcHobo 0 693 8 540 255 128 0 chr3 175054347 175054535 -52470043 + MIR SINE MIR 3 214 -48 32 0 0 0 chr3 175056761 175056793 -52467785 + GC_rich Low_complexity Low_complexity 1 32 0 354 80 0 0 chr3 175057898 175057948 -52466630 + (T)n Simple_repeat Simple_repeat 1 50 0 236 30 30 0 chr3 175058389 175058422 -52466156 + (TG)n Simple_repeat Simple_repeat 2 35 0 25 0 0 0 chr3 175058811 175058836 -52465742 + AT_rich Low_complexity Low_complexity 1 25 0 850 199 51 0 chr3 175061590 175061766 -52462812 - MER5A DNA MER1_type -4 185 1 2209 112 0 0 chr3 175063424 175063718 -52460860 - AluSg SINE Alu -16 294 1 2174 101 3 0 chr3 175063718 175064005 -52460573 - AluSg SINE Alu -22 288 1 22 0 0 0 chr3 175064011 175064033 -52460545 + AT_rich Low_complexity Low_complexity 1 22 0 812 157 0 0 chr3 175064033 175064154 -52460424 - FLAM_C SINE Alu -22 121 1 2158 121 7 0 chr3 175065086 175065383 -52459195 + AluSg1 SINE Alu 1 299 -10 28 29 0 0 chr3 175066030 175066065 -52458513 + AT_rich Low_complexity Low_complexity 1 35 0 710 179 0 0 chr3 175066331 175066454 -52458124 + FLAM_C SINE Alu 1 123 -20 1102 135 56 42 chr3 175067328 175067543 -52457035 - MER20 DNA MER1_type 0 219 2 2084 102 20 0 chr3 175067681 175067974 -52456604 - AluSx SINE Alu -13 299 1 216 0 0 0 chr3 175068452 175068476 -52456102 + (TCCCC)n Simple_repeat Simple_repeat 2 25 0 2166 103 0 0 chr3 175068947 175069264 -52455314 - AluSx SINE Alu 0 317 1 4287 157 21 40 chr3 175069551 175070034 -52454544 - L1PA16 LINE L1 -22 6144 5690 1674 183 3 28 chr3 175070034 175070324 -52454254 - AluJo SINE Alu -19 293 11 4287 157 21 40 chr3 175070324 175070823 -52453755 - L1PA16 LINE L1 -476 5690 5183 2113 132 10 3 chr3 175071000 175071310 -52453268 + AluSx SINE Alu 1 312 0 40 21 0 0 chr3 175071490 175071537 -52453041 + AT_rich Low_complexity Low_complexity 1 47 0 704 113 0 0 chr3 175071863 175071960 -52452618 + AluJ/FLAM SINE Alu 1 97 -215 1275 192 4 0 chr3 175071960 175072210 -52452368 - L1PBa LINE L1 -5221 1642 1392 701 242 11 0 chr3 175072207 175072397 -52452181 - L1PBa LINE L1 -6666 197 6 * 1186 136 0 0 chr3 175072902 175073064 -52451514 - AluY SINE Alu -25 286 125 225 0 0 0 chr3 175073950 175073975 -52450603 + (T)n Simple_repeat Simple_repeat 1 25 0 2096 53 0 30 chr3 175074904 175075167 -52449411 + AluY SINE Alu 37 291 -20 21 0 0 0 chr3 175075242 175075263 -52449315 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 175075515 175075536 -52449042 + AT_rich Low_complexity Low_complexity 1 21 0 3146 224 58 65 chr3 175075673 175076917 -52447661 + L1MC4 LINE L1 6808 8042 0 24 53 0 0 chr3 175077109 175077147 -52447431 + AT_rich Low_complexity Low_complexity 1 38 0 957 135 0 43 chr3 175077148 175077311 -52447267 - AluSg/x SINE Alu -25 287 132 596 292 34 6 chr3 175077490 175077668 -52446910 + MIR3 SINE MIR 16 198 -10 261 260 0 14 chr3 175077887 175077960 -52446618 - MIR SINE MIR -94 168 97 2121 121 7 0 chr3 175077966 175078256 -52446322 - AluSx SINE Alu -20 292 1 236 297 14 0 chr3 175078849 175078923 -52445655 - HAL1 LINE L1 -605 1902 1828 401 282 20 7 chr3 175079088 175079237 -52445341 - HAL1 LINE L1 -919 1588 1438 664 217 132 28 chr3 175079661 175079763 -52444815 - MIR SINE MIR 0 262 172 1186 216 4 12 chr3 175079763 175080004 -52444574 + MER8 DNA MER2_type 1 239 0 664 217 132 28 chr3 175080004 175080123 -52444455 - MIR SINE MIR -90 172 19 512 314 0 29 chr3 175080699 175080871 -52443707 - MIR SINE MIR -24 238 72 234 143 0 0 chr3 175080998 175081047 -52443531 + (CA)n Simple_repeat Simple_repeat 2 50 0 2521 47 3 0 chr3 175081162 175081461 -52443117 - AluY SINE Alu -10 301 2 490 261 98 43 chr3 175081803 175081928 -52442650 + MLT1H LTR MaLR 57 174 -375 657 209 0 23 chr3 175081928 175082057 -52442521 + FLAM_A SINE Alu 1 126 -7 490 261 98 43 chr3 175082057 175082207 -52442371 + MLT1H LTR MaLR 174 347 -202 184 239 7 169 chr3 175083254 175083396 -52441182 + L2 LINE L2 2626 2744 -570 2253 94 0 13 chr3 175083404 175083702 -52440876 - AluSc SINE Alu -15 294 1 339 362 25 12 chr3 175083750 175083913 -52440665 + L2 LINE L2 2863 3027 -286 260 161 35 23 chr3 175084029 175084116 -52440462 + CT-rich Low_complexity Low_complexity 3 90 0 414 198 28 38 chr3 175084940 175085046 -52439532 + MIR SINE MIR 122 226 -36 2078 128 3 3 chr3 175085994 175086291 -52438287 + AluSq SINE Alu 1 297 -16 1073 161 0 0 chr3 175086355 175086517 -52438061 + FRAM SINE Alu 1 159 -17 1946 138 32 0 chr3 175086519 175086801 -52437777 + AluSx SINE Alu 1 291 -21 191 114 23 0 chr3 175086808 175086852 -52437726 + (TAAA)n Simple_repeat Simple_repeat 1 45 0 2052 151 0 3 chr3 175087057 175087361 -52437217 - AluSx SINE Alu -9 303 1 295 307 97 0 chr3 175087505 175087619 -52436959 + MIR SINE MIR 48 172 -90 2009 150 0 0 chr3 175087765 175088058 -52436520 - AluSx SINE Alu -19 293 1 39 60 0 0 chr3 175088493 175088560 -52436018 + AT_rich Low_complexity Low_complexity 1 67 0 2393 68 0 19 chr3 175088801 175089108 -52435470 + AluY SINE Alu 1 301 -10 1122 137 70 74 chr3 175089507 175089791 -52434787 - MSTB2 LTR MaLR 0 457 175 2938 58 92 7 chr3 175089807 175090220 -52434358 - LTR7 LTR ERV1 -2 448 1 2180 91 56 16 chr3 175090220 175090595 -52433983 - HERVH LTR ERV1 0 7713 7324 1754 138 15 61 chr3 175090803 175090988 -52433590 - AluJb SINE Alu 0 312 147 2118 127 0 22 chr3 175090988 175091302 -52433276 - AluSx SINE Alu -5 307 1 1754 138 15 61 chr3 175091302 175091443 -52433135 - AluJb SINE Alu -165 147 1 2210 89 10 3 chr3 175092019 175092311 -52432267 + AluSx SINE Alu 1 294 -18 23 33 0 0 chr3 175093612 175093642 -52430936 + AT_rich Low_complexity Low_complexity 1 30 0 2090 129 23 63 chr3 175094148 175094475 -52430103 + MLT1B LTR MaLR 5 315 -75 1453 129 118 37 chr3 175094475 175094746 -52429832 - AluJb SINE Alu -19 293 1 2090 129 23 63 chr3 175094746 175094813 -52429765 + MLT1B LTR MaLR 315 383 -7 778 267 29 30 chr3 175095074 175095316 -52429262 - MIR SINE MIR -4 258 15 2244 110 3 0 chr3 175095316 175095624 -52428954 - AluSg SINE Alu -1 309 1 680 205 0 8 chr3 175095871 175095998 -52428580 + FLAM_C SINE Alu 2 127 -16 24 0 0 0 chr3 175095998 175096022 -52428556 + AT_rich Low_complexity Low_complexity 1 24 0 2211 96 0 0 chr3 175096022 175096346 -52428232 - AluY SINE Alu 0 324 1 1927 134 0 4 chr3 175096423 175096692 -52427886 - AluSx SINE Alu -44 268 1 2361 97 0 7 chr3 175096703 175097013 -52427565 - AluSg SINE Alu -2 308 1 2263 166 20 0 chr3 175097172 175097570 -52427008 + L1MC1 LINE L1 5921 6326 -7 1371 295 163 10 chr3 175097620 175098712 -52425866 - L2 LINE L2 0 3313 2058 633 186 77 70 chr3 175099116 175099272 -52425306 + MER5B DNA MER1_type 21 177 -1 370 321 14 27 chr3 175099690 175099911 -52424667 - MLT1K LTR MaLR 0 588 371 1764 153 10 0 chr3 175100234 175100528 -52424050 - AluSx SINE Alu -15 297 1 35 63 0 0 chr3 175100528 175100591 -52423987 + AT_rich Low_complexity Low_complexity 1 63 0 2232 86 12 68 chr3 175101437 175101775 -52422803 - 7SLRNA srpRNA srpRNA -1 319 1 1539 178 69 14 chr3 175102153 175102429 -52422149 + AluJb SINE Alu 1 291 -21 353 241 362 0 chr3 175102641 175102782 -52421796 - MIR SINE MIR 0 262 71 2239 101 0 10 chr3 175103034 175103340 -52421238 + AluSg SINE Alu 2 304 -6 300 220 132 16 chr3 175103689 175103871 -52420707 - Charlie1 DNA MER1_type -2 2759 2557 2343 115 0 0 chr3 175103906 175104218 -52420360 - AluSx SINE Alu 0 312 1 896 162 0 0 chr3 175104231 175104373 -52420205 - FRAM SINE Alu -26 150 9 3048 161 45 5 chr3 175104376 175105036 -52419542 - Charlie1 DNA MER1_type -195 2566 1880 228 198 41 132 chr3 175105375 175105496 -52419082 + MER20B DNA MER1_type 24 133 -650 990 168 25 0 chr3 175106419 175106580 -52417998 - AluJo/FRAM SINE Alu -7 305 141 240 220 0 0 chr3 175106580 175106630 -52417948 - AluJ/monomer SINE Alu -251 50 1 526 293 51 42 chr3 175106937 175107054 -52417524 + MIR SINE MIR 31 152 -110 2344 90 3 0 chr3 175107054 175107355 -52417223 + AluSp SINE Alu 1 302 -11 526 293 51 42 chr3 175107355 175107452 -52417126 + MIR SINE MIR 152 247 -15 1215 200 83 38 chr3 175107702 175107992 -52416586 + AluJb SINE Alu 1 303 -9 1918 166 0 0 chr3 175108191 175108487 -52416091 - AluJb SINE Alu -14 298 3 2148 102 0 7 chr3 175108498 175108810 -52415768 - AluSx SINE Alu 0 310 1 2339 80 10 0 chr3 175109065 175109367 -52415211 - AluSp SINE Alu -8 305 1 864 89 0 0 chr3 175111483 175111595 -52412983 - AluSp SINE Alu -201 112 1 22 56 0 0 chr3 175111870 175111906 -52412672 + AT_rich Low_complexity Low_complexity 1 36 0 452 298 0 8 chr3 175112325 175112449 -52412129 + FLAM_A SINE Alu 1 123 -10 22 0 0 0 chr3 175112924 175112946 -52411632 + AT_rich Low_complexity Low_complexity 1 22 0 1534 165 8 4 chr3 175113741 175113983 -52410595 + AluSx SINE Alu 1 243 -69 1741 169 4 0 chr3 175114015 175114287 -52410291 + AluSx SINE Alu 1 273 -39 407 194 11 0 chr3 175114306 175114399 -52410179 + GA-rich Low_complexity Low_complexity 3 96 0 468 62 0 0 chr3 175114515 175114579 -52409999 + (TA)n Simple_repeat Simple_repeat 1 64 0 199 194 0 0 chr3 175114582 175114618 -52409960 + L2 LINE L2 3226 3261 -11 2020 154 3 0 chr3 175114683 175114994 -52409584 + AluJb SINE Alu 1 312 0 2366 57 0 0 chr3 175115215 175115528 -52409050 + AluY SINE Alu 1 313 0 252 297 315 0 chr3 175116024 175116135 -52408443 + MER5A DNA MER1_type 36 181 -8 2143 126 13 0 chr3 175116183 175116504 -52408074 - AluSq SINE Alu 0 325 1 1898 159 10 29 chr3 175116536 175116844 -52407734 - AluJo SINE Alu -2 310 9 23 0 0 0 chr3 175118444 175118467 -52406111 + AT_rich Low_complexity Low_complexity 1 23 0 759 273 16 5 chr3 175118847 175119034 -52405544 + MER5A DNA MER1_type 1 189 0 333 0 0 0 chr3 175119146 175119183 -52405395 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 821 168 132 0 chr3 175119361 175119528 -52405050 - MER5A DNA MER1_type 0 189 1 1864 178 0 6 chr3 175119571 175119885 -52404693 + AluSx SINE Alu 1 312 0 212 160 0 60 chr3 175119889 175119939 -52404639 + GA-rich Low_complexity Low_complexity 3 49 0 2315 105 0 0 chr3 175120273 175120578 -52404000 - AluSg SINE Alu -5 305 1 400 264 116 8 chr3 175120722 175120851 -52403727 - L2 LINE L2 0 3313 3171 1390 138 0 0 chr3 175120865 175121068 -52403510 + AluSx SINE Alu 1 203 -109 686 114 0 35 chr3 175121068 175121135 -52403443 + AluSg/x SINE Alu 69 132 -180 2278 119 0 0 chr3 175121135 175121438 -52403140 + AluSx SINE Alu 1 303 -9 686 114 0 35 chr3 175121438 175121484 -52403094 + AluSg/x SINE Alu 132 178 -134 295 307 97 0 chr3 175121643 175121757 -52402821 - MIR SINE MIR -90 172 48 2115 141 0 3 chr3 175121901 175122205 -52402373 + AluSx SINE Alu 1 303 -9 191 114 23 0 chr3 175122410 175122454 -52402124 + (TTTA)n Simple_repeat Simple_repeat 1 45 0 1946 138 32 0 chr3 175122461 175122743 -52401835 - AluSx SINE Alu -21 291 1 1073 161 0 0 chr3 175122745 175122907 -52401671 - FRAM SINE Alu -17 159 1 2078 128 3 3 chr3 175122971 175123268 -52401310 - AluSq SINE Alu -16 297 1 414 198 28 38 chr3 175124217 175124323 -52400255 - MIR SINE MIR -36 226 122 260 161 35 23 chr3 175125147 175125234 -52399344 + GA-rich Low_complexity Low_complexity 3 90 0 350 356 25 12 chr3 175125350 175125513 -52399065 - L2 LINE L2 -286 3027 2863 2253 94 0 13 chr3 175125561 175125859 -52398719 + AluSc SINE Alu 1 294 -15 184 239 7 169 chr3 175125867 175126009 -52398569 - L2 LINE L2 -570 2744 2626 490 261 98 43 chr3 175127056 175127206 -52397372 - MLT1H LTR MaLR -202 347 207 657 209 0 23 chr3 175127206 175127335 -52397243 - FLAM_A SINE Alu -7 126 1 490 261 98 43 chr3 175127335 175127460 -52397118 - MLT1H LTR MaLR -342 207 57 2535 55 3 7 chr3 175127802 175128111 -52396467 + AluY SINE Alu 2 309 -2 2185 114 7 3 chr3 175128374 175128681 -52395897 + AluSq SINE Alu 5 312 -1 1203 115 26 21 chr3 175128765 175128782 -52395796 + AluSg/x SINE Alu 118 133 -179 2341 105 3 0 chr3 175128782 175129088 -52395490 + AluSp SINE Alu 1 307 -6 1203 115 26 21 chr3 175129088 175129262 -52395316 + AluSg/x SINE Alu 133 310 -2 183 42 0 0 chr3 175130546 175130570 -52394008 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1729 85 0 0 chr3 175130572 175130784 -52393794 - AluSq SINE Alu -31 282 71 627 300 103 52 chr3 175131174 175131274 -52393304 + L2 LINE L2 2618 2711 -603 1840 107 92 0 chr3 175131274 175131578 -52393000 + AluSx SINE Alu 1 328 0 627 300 103 52 chr3 175131578 175131806 -52392772 + L2 LINE L2 2711 2964 -350 3552 29 0 2 chr3 175131918 175132338 -52392240 - L1PA3 LINE L1 0 6155 5737 3871 21 0 0 chr3 175132339 175132844 -52391734 + L1PA3 LINE L1 5219 5723 -432 184 329 59 0 chr3 175132952 175133037 -52391541 + L2 LINE L2 3183 3272 0 2245 64 53 0 chr3 175133136 175133417 -52391161 + AluY SINE Alu 1 296 -15 215 262 0 48 chr3 175134403 175134487 -52390091 + C-rich Low_complexity Low_complexity 1 80 0 240 200 45 18 chr3 175135105 175135215 -52389363 + (TATAA)n Simple_repeat Simple_repeat 2 114 0 658 184 0 0 chr3 175135226 175135335 -52389243 - FLAM_C SINE Alu -26 117 9 2428 53 3 3 chr3 175135603 175135905 -52388673 - AluY SINE Alu -9 302 1 27 0 0 0 chr3 175136015 175136042 -52388536 + AT_rich Low_complexity Low_complexity 1 27 0 923 149 18 36 chr3 175136216 175136384 -52388194 + Tigger2a DNA MER2_type 2 166 -268 2656 18 0 0 chr3 175136680 175137008 -52387570 - L1P1 LINE L1 -891 5255 4928 * 4466 13 7 0 chr3 175137007 175137546 -52387032 + L1P1 LINE L1 5268 5810 -345 297 292 106 0 chr3 175138246 175138359 -52386219 + L2 LINE L2 3189 3313 0 1293 247 89 71 chr3 175138425 175138944 -52385634 + MLT1F1 LTR MaLR 12 564 -3 710 114 50 154 chr3 175139086 175139248 -52385330 + MER33 DNA MER1_type 53 230 -2355 2342 87 0 3 chr3 175139248 175139546 -52385032 + AluSg SINE Alu 1 297 -13 710 114 50 154 chr3 175139546 175139587 -52384991 + MER33 DNA MER1_type 230 274 -2311 1961 125 24 3 chr3 175139587 175139876 -52384702 + AluSq SINE Alu 1 295 -18 710 114 50 154 chr3 175139876 175139970 -52384608 + MER33 DNA MER1_type 274 320 -4 560 294 168 16 chr3 175139987 175140474 -52384104 - HAL1 LINE L1 -57 2450 1890 962 250 84 27 chr3 175140658 175141098 -52383480 - HAL1 LINE L1 -662 1845 1381 371 301 139 30 chr3 175141101 175141195 -52383383 - L1MEd LINE L1 -5306 813 731 186 103 0 0 chr3 175141195 175141224 -52383354 + (TG)n Simple_repeat Simple_repeat 2 30 0 371 301 139 30 chr3 175141224 175141295 -52383283 - L1MEd LINE L1 -5388 731 630 2256 166 23 17 chr3 175141754 175142271 -52382307 - LTR27 LTR ERV1 -11 493 2 443 292 92 0 chr3 175144039 175144159 -52380419 - L2 LINE L2 -6 3266 3136 2405 77 0 3 chr3 175144282 175144594 -52379984 - AluY SINE Alu 0 311 1 907 218 36 82 chr3 175144638 175145079 -52379499 + LTR37B LTR ERV1 47 467 -1 304 363 118 9 chr3 175145090 175145266 -52379312 - L2 LINE L2 -261 3052 2848 2568 48 0 10 chr3 175145266 175145580 -52378998 + AluY SINE Alu 1 311 0 304 363 118 9 chr3 175145580 175145615 -52378963 - L2 LINE L2 -465 2848 2818 234 174 33 16 chr3 175145674 175145795 -52378783 + GA-rich Low_complexity Low_complexity 2 124 0 * 282 206 0 0 chr3 175145793 175145856 -52378722 + G-rich Low_complexity Low_complexity 4 66 0 * 717 130 24 12 chr3 175145850 175146019 -52378559 + GA-rich Low_complexity Low_complexity 2 172 0 408 40 0 0 chr3 175146121 175146171 -52378407 + (TA)n Simple_repeat Simple_repeat 1 50 0 21 0 0 0 chr3 175146385 175146406 -52378172 + AT_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr3 175146465 175146490 -52378088 + AT_rich Low_complexity Low_complexity 1 25 0 22 56 0 0 chr3 175146509 175146545 -52378033 + AT_rich Low_complexity Low_complexity 1 36 0 509 369 58 24 chr3 175149142 175149521 -52375057 - L2 LINE L2 -1 3312 2921 425 279 47 12 chr3 175151047 175151219 -52373359 + LTR16A LTR ERVL 34 211 -239 383 289 9 0 chr3 175151218 175151332 -52373246 + LTR16A LTR ERVL 336 450 0 * 676 59 0 78 chr3 175151453 175151555 -52373023 + AluSg/x SINE Alu 208 301 -8 576 200 0 0 chr3 175151647 175151747 -52372831 + AluSg/x SINE Alu 186 285 -25 21 57 0 0 chr3 175151747 175151782 -52372796 + AT_rich Low_complexity Low_complexity 1 35 0 1794 65 5 0 chr3 175152474 175152691 -52371887 + AluY SINE Alu 1 218 -93 298 95 0 0 chr3 175152691 175152733 -52371845 + AluY SINE Alu 253 294 -8 458 134 0 12 chr3 175152735 175152817 -52371761 + (TA)n Simple_repeat Simple_repeat 2 82 0 234 0 0 0 chr3 175153149 175153175 -52371403 + (T)n Simple_repeat Simple_repeat 1 26 0 348 287 137 99 chr3 175153562 175153671 -52370907 - L2 LINE L2 -498 2816 2713 2151 118 27 0 chr3 175153671 175153967 -52370611 - AluSg SINE Alu -6 304 1 348 287 137 99 chr3 175153967 175154282 -52370296 - L2 LINE L2 -601 2713 2376 2504 67 0 0 chr3 175154408 175154706 -52369872 - AluY SINE Alu -13 298 1 202 299 111 17 chr3 175155057 175155174 -52369404 + L3b LINE CR1 1265 1392 -191 1968 204 76 6 chr3 175158364 175158888 -52365690 + MER63C DNA MER1_type 1 561 -369 200 213 0 0 chr3 175159268 175159315 -52365263 + A-rich Low_complexity Low_complexity 4 50 0 1948 174 3 0 chr3 175159364 175159675 -52364903 - AluJb SINE Alu 0 312 1 2237 106 3 7 chr3 175159793 175160095 -52364483 - AluSg SINE Alu -9 301 1 424 277 96 83 chr3 175160096 175160410 -52364168 - L1MC4a LINE L1 -1866 5942 5625 467 267 97 90 chr3 175161638 175162072 -52362506 - LTR33A LTR ERVL -84 439 3 2969 101 13 26 chr3 175162454 175162921 -52361657 - MER4C LTR ERV1 -4 461 1 22 0 0 0 chr3 175163246 175163268 -52361310 + AT_rich Low_complexity Low_complexity 1 22 0 1955 166 74 15 chr3 175163855 175163891 -52360687 - MSTA LTR MaLR 0 428 396 1912 93 0 4 chr3 175163891 175164139 -52360439 + AluY SINE Alu 47 293 -18 1955 166 74 15 chr3 175164139 175164505 -52360073 - MSTA LTR MaLR -32 396 2 3464 102 10 10 chr3 175165596 175166107 -52358471 - MER9 LTR ERVK 0 511 1 1472 165 42 0 chr3 175166150 175166459 -52358119 - MER33 DNA MER1_type -1 323 2 996 162 29 12 chr3 175166459 175166632 -52357946 - MER5A DNA MER1_type -13 176 1 485 277 33 82 chr3 175166658 175166842 -52357736 + MER5B DNA MER1_type 2 176 -2 2250 65 65 0 chr3 175167831 175168122 -52356456 + AluY SINE Alu 1 310 -1 21 0 0 0 chr3 175168122 175168143 -52356435 + AT_rich Low_complexity Low_complexity 1 21 0 2791 239 30 50 chr3 175168995 175169798 -52354780 - MER21B LTR ERV1 -58 805 19 333 0 0 0 chr3 175169887 175169924 -52354654 + (TA)n Simple_repeat Simple_repeat 2 38 0 203 315 87 54 chr3 175171282 175171374 -52353204 + L2 LINE L2 3208 3302 -11 225 0 0 0 chr3 175172346 175172371 -52352207 + (A)n Simple_repeat Simple_repeat 1 25 0 351 113 0 0 chr3 175172702 175172755 -52351823 + (TA)n Simple_repeat Simple_repeat 2 54 0 298 95 0 0 chr3 175172757 175172799 -52351779 - AluY SINE Alu -8 294 253 1794 65 5 0 chr3 175172799 175173016 -52351562 - AluY SINE Alu -93 218 1 355 243 76 21 chr3 175173216 175173360 -52351218 + MER103 DNA DNA 14 165 -1 336 326 191 11 chr3 175173632 175173994 -52350584 + L2 LINE L2 1897 2323 -991 225 324 0 42 chr3 175174222 175174293 -52350285 + MIR SINE MIR 63 130 -78 * 1176 307 55 54 chr3 175174272 175174943 -52349635 + L2 LINE L2 528 1199 -2115 438 280 0 0 chr3 175174973 175175066 -52349512 + L2 LINE L2 3221 3313 0 475 260 91 21 chr3 175176425 175176614 -52347964 - MIR SINE MIR 0 262 59 1814 109 19 0 chr3 175176650 175176915 -52347663 - L1PA10 LINE L1 -4 6164 5895 1908 108 21 48 chr3 175176915 175177248 -52347330 + MER1B DNA MER1_type 10 333 -6 24 53 0 0 chr3 175177440 175177478 -52347100 + AT_rich Low_complexity Low_complexity 1 38 0 629 331 81 19 chr3 175177478 175178118 -52346460 + HAL1b LINE L1 99 778 -570 385 234 7 92 chr3 175178600 175178741 -52345837 + MIR SINE MIR 50 178 -84 2231 80 0 7 chr3 175179221 175179543 -52345035 + AluY SINE Alu 1 320 0 382 268 27 0 chr3 175179543 175179655 -52344923 - L1ME LINE L1 -436 5685 5571 21 0 0 0 chr3 175179847 175179868 -52344710 + AT_rich Low_complexity Low_complexity 1 21 0 2006 88 0 0 chr3 175180988 175181248 -52343330 - AluY SINE Alu -11 300 41 21 0 0 0 chr3 175181249 175181270 -52343308 + AT_rich Low_complexity Low_complexity 1 21 0 1214 182 40 43 chr3 175181456 175181758 -52342820 + L1MD2 LINE L1 6047 6347 -12 1130 238 129 29 chr3 175181770 175182311 -52342267 - L2 LINE L2 -88 3225 2619 22 0 0 0 chr3 175183805 175183827 -52340751 + AT_rich Low_complexity Low_complexity 1 22 0 196 203 95 54 chr3 175185036 175185110 -52339468 + L2 LINE L2 2783 2859 -455 2407 97 0 0 chr3 175185380 175185689 -52338889 + AluSq SINE Alu 1 309 -4 410 107 0 27 chr3 175186138 175186213 -52338365 + (CAGA)n Simple_repeat Simple_repeat 2 74 0 1413 229 94 30 chr3 175186237 175186692 -52337886 - MLT2B1 LTR ERVL -19 535 5 533 288 75 20 chr3 175187764 175188056 -52336522 - MLT1H LTR MaLR -241 308 1 284 294 80 59 chr3 175188483 175188772 -52335806 - MLT1K LTR MaLR -151 437 143 29 47 0 0 chr3 175188913 175188956 -52335622 + AT_rich Low_complexity Low_complexity 1 43 0 601 248 137 0 chr3 175189195 175189348 -52335230 - MER5A DNA MER1_type -7 182 9 1654 152 16 66 chr3 175189452 175189755 -52334823 + AluJo SINE Alu 1 288 -24 2374 78 7 0 chr3 175189952 175190247 -52334331 - AluSg SINE Alu -13 297 1 2379 74 7 13 chr3 175190919 175191094 -52333484 - AluSp SINE Alu -4 309 135 2231 82 41 0 chr3 175191094 175191385 -52333193 - AluY SINE Alu -8 303 1 2379 74 7 13 chr3 175191385 175191519 -52333059 - AluSp SINE Alu -178 135 2 2460 71 13 0 chr3 175191530 175191839 -52332739 - AluSp SINE Alu 0 313 1 2091 124 3 0 chr3 175192287 175192577 -52332001 - AluSx SINE Alu -19 293 3 441 160 80 20 chr3 175192669 175192769 -52331809 - MLT2D LTR ERVL -323 91 1 2453 76 3 3 chr3 175193366 175193669 -52330909 + AluSx SINE Alu 1 303 -9 266 340 60 20 chr3 175193907 175194007 -52330571 + L2 LINE L2 3119 3222 -50 2253 102 3 0 chr3 175194191 175194485 -52330093 + AluSx SINE Alu 1 295 -17 272 212 53 24 chr3 175194895 175195065 -52329513 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 734 165 0 0 chr3 175195076 175195185 -52329393 - FLAM_C SINE Alu -26 117 9 2428 53 3 3 chr3 175195453 175195755 -52328823 - AluY SINE Alu -9 302 1 27 0 0 0 chr3 175195865 175195892 -52328686 + AT_rich Low_complexity Low_complexity 1 27 0 1178 135 31 35 chr3 175196066 175196270 -52328308 + Tigger2a DNA MER2_type 2 205 -2503 213 39 0 0 chr3 175196270 175196296 -52328282 + (TTCC)n Simple_repeat Simple_repeat 3 28 0 1876 178 0 0 chr3 175196296 175196589 -52327989 - AluJb SINE Alu -19 293 1 1178 135 31 35 chr3 175196589 175196612 -52327966 + Tigger2a DNA MER2_type 203 229 -205 2479 83 3 0 chr3 175196618 175196930 -52327648 - AluSq SINE Alu 0 313 1 441 160 80 20 chr3 175197526 175197626 -52326952 + MLT2D LTR ERVL 1 91 -323 2056 124 3 3 chr3 175197718 175198009 -52326569 + AluSx SINE Alu 3 293 -19 2460 71 13 0 chr3 175198456 175198765 -52325813 + AluSp SINE Alu 1 313 0 2379 74 7 13 chr3 175198776 175198910 -52325668 + AluSp SINE Alu 2 135 -178 2231 82 41 0 chr3 175198910 175199201 -52325377 + AluY SINE Alu 1 303 -8 2379 74 7 13 chr3 175199201 175199376 -52325202 + AluSp SINE Alu 135 309 -4 2374 78 7 0 chr3 175200049 175200344 -52324234 + AluSg SINE Alu 1 297 -13 1654 152 16 66 chr3 175200541 175200844 -52323734 - AluJo SINE Alu -24 288 1 601 248 137 0 chr3 175200948 175201101 -52323477 + MER5A DNA MER1_type 9 182 -7 2341 57 7 3 chr3 175201589 175201888 -52322690 - AluY SINE Alu -11 300 1 2241 64 54 0 chr3 175202178 175202458 -52322120 + AluY SINE Alu 1 295 -16 2103 89 18 14 chr3 175203172 175203498 -52321080 + AluSp SINE Alu 1 327 0 21 36 0 0 chr3 175203598 175203626 -52320952 + AT_rich Low_complexity Low_complexity 1 28 0 228 279 29 48 chr3 175204422 175204526 -52320052 + MIR SINE MIR 90 191 -71 2102 118 7 16 chr3 175204936 175205242 -52319336 - AluSc SINE Alu -6 303 1 387 214 58 7 chr3 175205242 175205396 -52319182 + L1MC5 LINE L1 7695 7856 -105 183 200 246 0 chr3 175206110 175206175 -52318403 - L2 LINE L2 -40 3273 3193 3635 131 64 40 chr3 175206247 175207061 -52317517 - LTR12 LTR ERV1 -6 2432 1 481 262 48 52 chr3 175207162 175207433 -52317145 - pTR5 LTR ERV1 -1426 1012 743 23 68 0 0 chr3 175207618 175207662 -52316916 + AT_rich Low_complexity Low_complexity 1 44 0 252 319 26 35 chr3 175207894 175208010 -52316568 - MLT1K LTR MaLR -116 472 358 2085 135 6 6 chr3 175208131 175208443 -52316135 - AluSx SINE Alu 0 312 1 390 369 56 25 chr3 175208547 175208707 -52315871 + L2 LINE L2 3104 3268 -4 2186 109 0 17 chr3 175209278 175209580 -52314998 + AluSx SINE Alu 12 308 -4 1377 219 30 41 chr3 175209741 175210110 -52314468 + MLT1A1 LTR MaLR 1 365 0 26 0 0 0 chr3 175210654 175210680 -52313898 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr3 175210901 175210930 -52313648 + AT_rich Low_complexity Low_complexity 1 29 0 2230 96 3 3 chr3 175212081 175212374 -52312204 - AluSc SINE Alu -16 293 1 398 176 22 11 chr3 175212401 175212492 -52312086 + MER94 DNA DNA 42 133 -1 444 220 27 47 chr3 175214149 175214299 -52310279 - MER103 DNA DNA 0 166 20 2380 100 0 3 chr3 175214736 175215046 -52309532 - AluSq SINE Alu -4 309 1 1184 286 64 23 chr3 175215477 175215888 -52308690 + LTR16B LTR ERVL 2 434 -30 2591 132 72 5 chr3 175215888 175216289 -52308289 - MSTA LTR MaLR 0 428 1 1184 286 64 23 chr3 175216289 175216317 -52308261 + LTR16B LTR ERVL 434 459 -5 1927 216 65 16 chr3 175216685 175217130 -52307448 - MLT1C LTR MaLR 0 467 1 1297 177 29 0 chr3 175218163 175218372 -52306206 + MER20 DNA MER1_type 1 215 -4 1457 143 59 113 chr3 175219329 175219780 -52304798 - pTR5 LTR ERV1 -535 1512 5 1586 193 95 15 chr3 175219899 175220236 -52304342 + MLT1C LTR MaLR 104 467 0 5770 103 36 11 chr3 175220277 175220968 -52303610 - L1PA8A LINE L1 -1 6130 5457 1993 129 4 4 chr3 175220968 175221248 -52303330 - AluSx SINE Alu -12 300 21 5770 103 36 11 chr3 175221248 175221988 -52302590 - L1PA8A LINE L1 -674 5457 4772 2050 107 37 0 chr3 175222297 175222596 -52301982 - AluSg SINE Alu 0 309 1 199 402 27 27 chr3 175223120 175223232 -52301346 - MIR SINE MIR -78 130 19 603 318 28 14 chr3 175223857 175224071 -52300507 + MIR SINE MIR 8 224 -38 2557 65 0 0 chr3 175224328 175224634 -52299944 + AluY SINE Alu 1 306 -5 2299 70 0 11 chr3 175224897 175225202 -52299376 + AluY SINE Alu 1 302 0 2108 138 3 6 chr3 175226980 175227292 -52297286 - AluSx SINE Alu -1 311 1 2252 98 19 3 chr3 175227944 175228251 -52296327 + AluSx SINE Alu 1 312 0 204 388 16 41 chr3 175228809 175228930 -52295648 - L2 LINE L2 -30 3242 3125 229 370 116 0 chr3 175229005 175229151 -52295427 - L2 LINE L2 -213 3059 2897 1132 180 92 48 chr3 175229653 175229690 -52294888 + MER58B DNA MER1_type 49 83 -2337 2010 156 0 7 chr3 175229690 175229991 -52294587 - AluSx SINE Alu -13 299 1 1132 180 92 48 chr3 175229991 175230225 -52294353 + MER58B DNA MER1_type 83 332 -9 623 62 0 0 chr3 175230264 175230345 -52294233 + Alu SINE Alu 226 306 -4 271 299 104 35 chr3 175230782 175230926 -52293652 - L2 LINE L2 -1 3312 3159 180 111 0 0 chr3 175231645 175231672 -52292906 + (TAA)n Simple_repeat Simple_repeat 1 27 0 204 204 37 19 chr3 175232084 175232138 -52292440 - L2 LINE L2 -92 3221 3167 21 0 0 0 chr3 175232340 175232361 -52292217 + AT_rich Low_complexity Low_complexity 1 21 0 748 297 15 55 chr3 175232422 175232580 -52291998 - LTR16C LTR ERVL -12 479 335 2215 100 20 3 chr3 175232580 175232879 -52291699 + AluSx SINE Alu 1 304 -8 748 297 15 55 chr3 175232879 175232993 -52291585 - LTR16C LTR ERVL -156 335 218 7443 121 44 13 chr3 175233005 175234192 -52290386 + Tigger3b DNA MER2_type 7 1230 -1 249 343 105 40 chr3 175234379 175234812 -52289766 - L2 LINE L2 -491 2823 2271 2942 143 12 0 chr3 175234812 175235233 -52289345 + MSTB LTR MaLR 1 426 0 249 343 105 40 chr3 175235233 175235312 -52289266 - L2 LINE L2 -1043 2271 2199 231 125 0 0 chr3 175235773 175235813 -52288765 + (TATAA)n Simple_repeat Simple_repeat 2 41 0 313 273 149 16 chr3 175236825 175236946 -52287632 - MER5A DNA MER1_type -52 137 1 3561 85 4 11 chr3 175237557 175237634 -52286944 + L1PA10 LINE L1 5704 5780 -388 2357 92 0 0 chr3 175237634 175237938 -52286640 + AluY SINE Alu 1 304 -7 3561 85 4 11 chr3 175237938 175238318 -52286260 + L1PA10 LINE L1 5780 6158 -10 21 0 0 0 chr3 175238544 175238565 -52286013 + AT_rich Low_complexity Low_complexity 1 21 0 38 0 0 0 chr3 175239111 175239149 -52285429 + AT_rich Low_complexity Low_complexity 1 38 0 282 315 48 42 chr3 175239457 175239622 -52284956 - L2 LINE L2 -8 3305 3140 297 0 0 0 chr3 175240319 175240352 -52284226 + (TG)n Simple_repeat Simple_repeat 2 34 0 4706 162 44 20 chr3 175240352 175240677 -52283901 - L1PB4 LINE L1 -13 6143 5827 567 55 0 33 chr3 175240677 175240768 -52283810 + (TA)n Simple_repeat Simple_repeat 2 89 0 4706 162 44 20 chr3 175240768 175241732 -52282846 - L1PB4 LINE L1 -329 5827 4828 224 333 103 34 chr3 175242184 175242301 -52282277 - L2 LINE L2 -15 3257 3133 21 0 0 0 chr3 175242683 175242704 -52281874 + AT_rich Low_complexity Low_complexity 1 21 0 1916 162 7 0 chr3 175242802 175243110 -52281468 + AluSx SINE Alu 1 310 -2 1196 68 0 0 chr3 175243289 175243437 -52281141 - AluY SINE Alu -12 299 152 10673 129 31 4 chr3 175243609 175245233 -52279345 - Tigger1 DNA MER2_type 0 2418 750 43552 35 21 1 chr3 175245233 175251261 -52273317 + L1PA2 LINE L1 6 6155 0 4331 152 19 32 chr3 175251319 175251674 -52272904 - Tigger1 DNA MER2_type -1656 762 404 2238 121 7 0 chr3 175251674 175251979 -52272599 - AluSq SINE Alu -6 307 1 4331 152 19 32 chr3 175251979 175251990 -52272588 - Tigger1 DNA MER2_type -2014 404 394 2449 91 3 0 chr3 175251990 175252299 -52272279 - AluSp SINE Alu -3 310 1 4331 152 19 32 chr3 175252299 175252670 -52271908 - Tigger1 DNA MER2_type -2024 394 34 836 271 6 11 chr3 175252824 175253005 -52271573 + MER5A DNA MER1_type 4 183 -6 1640 161 44 0 chr3 175253319 175253622 -52270956 + AluJo SINE Alu 1 315 0 570 162 0 29 chr3 175254377 175254482 -52270096 + MSTC LTR MaLR 1 102 -326 3101 60 92 7 chr3 175254492 175254905 -52269673 + LTR7 LTR ERV1 1 448 -2 19957 93 7 40 chr3 175254907 175257998 -52266580 + HERVH LTR ERV1 1 2987 -4726 979 127 7 0 chr3 175257992 175258142 -52266436 + HERVH LTR ERV1 3140 3290 -4423 * 8335 111 4 8 chr3 175258132 175259860 -52264718 + HERVH LTR ERV1 3492 5273 -1818 1099 147 21 0 chr3 175259861 175260051 -52264527 + HERVH LTR ERV1 5600 5793 -1920 623 202 16 23 chr3 175260158 175260287 -52264291 + AluJb SINE Alu 168 295 -17 254 176 83 111 chr3 175260775 175260841 -52263737 + MLT1L LTR MaLR 505 568 -47 2417 111 39 28 chr3 175260841 175261201 -52263377 - THE1B LTR MaLR 0 364 1 254 176 83 111 chr3 175261201 175261242 -52263336 + MLT1L LTR MaLR 568 609 -6 1989 112 20 46 chr3 175262094 175262398 -52262180 - AluSx SINE Alu -16 296 1 805 189 16 0 chr3 175262445 175262572 -52262006 + FLAM_C SINE Alu 1 129 -4 24 0 0 0 chr3 175263636 175263660 -52260918 + AT_rich Low_complexity Low_complexity 1 24 0 382 287 70 7 chr3 175263819 175263962 -52260616 + L1ME4a LINE L1 5967 6118 -3 2330 107 7 0 chr3 175263970 175264278 -52260300 - AluSq SINE Alu -3 310 1 2065 148 0 0 chr3 175265434 175265725 -52258853 + AluSq SINE Alu 1 291 -22 1634 160 16 62 chr3 175266245 175266391 -52258187 + AluJo SINE Alu 1 127 -185 1540 124 0 18 chr3 175266391 175266616 -52257962 + AluJb SINE Alu 81 301 -11 1634 160 16 62 chr3 175266616 175266776 -52257802 + AluJo SINE Alu 127 293 -19 2520 77 0 0 chr3 175266778 175267088 -52257490 + AluY SINE Alu 1 310 -1 2474 60 0 7 chr3 175267426 175267727 -52256851 + AluY SINE Alu 1 299 -12 1535 193 10 17 chr3 175268809 175269105 -52255473 + AluJo SINE Alu 1 294 -18 6378 85 10 6 chr3 175269902 175270818 -52253760 + L1PB1 LINE L1 5231 6150 -1 4381 140 18 12 chr3 175270845 175271647 -52252931 + L1MA4A LINE L1 5317 6122 -181 539 129 0 0 chr3 175271650 175271743 -52252835 + L1MA4A LINE L1 6188 6280 -23 1961 179 25 39 chr3 175271744 175271793 -52252785 + L1 LINE L1 2920 2968 -3178 2057 115 7 3 chr3 175271793 175272088 -52252490 + AluSq SINE Alu 18 313 0 1961 179 25 39 chr3 175272088 175272598 -52251980 + L1 LINE L1 2968 3471 -2675 1370 85 0 0 chr3 175272598 175272774 -52251804 + AluY SINE Alu 135 310 -1 8159 164 24 17 chr3 175272781 175273714 -52250864 + L1 LINE L1 3511 4464 -1682 2025 122 7 7 chr3 175273714 175274008 -52250570 + AluSc SINE Alu 1 294 -15 8159 164 24 17 chr3 175274008 175274752 -52249826 + L1 LINE L1 4464 5201 -945 4802 168 29 53 chr3 175274751 175274865 -52249713 + L1M1 LINE L1 4125 4240 -2060 * 2247 119 3 6 chr3 175274865 175275177 -52249401 + AluSq SINE Alu 1 311 -2 4802 168 29 53 chr3 175275177 175275266 -52249312 + L1M1 LINE L1 4240 4330 -1970 252 0 0 0 chr3 175275266 175275294 -52249284 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 2208 116 0 0 chr3 175275297 175275591 -52248987 - AluSg SINE Alu -16 294 1 2246 107 0 13 chr3 175275591 175275900 -52248678 - AluSx SINE Alu -7 305 1 4802 168 29 53 chr3 175275900 175277090 -52247488 + L1M1 LINE L1 4331 5475 -825 2204 122 0 0 chr3 175277090 175277394 -52247184 + AluSx SINE Alu 1 304 -8 4802 168 29 53 chr3 175277394 175277615 -52246963 + L1M1 LINE L1 5475 5700 -600 1018 110 0 0 chr3 175277654 175277800 -52246778 - L1MA2 LINE L1 -3 6301 6156 2252 116 0 0 chr3 175277800 175278094 -52246484 + AluSx SINE Alu 1 294 -18 838 154 12 59 chr3 175278176 175278345 -52246233 + FRAM SINE Alu 1 161 -5 2204 128 0 3 chr3 175278740 175279045 -52245533 - AluSx SINE Alu -8 304 1 434 182 123 84 chr3 175279055 175279258 -52245320 - L1ME3 LINE L1 -8 6154 5944 1993 125 17 14 chr3 175279509 175279805 -52244773 - AluSx SINE Alu -3 309 13 2478 77 0 6 chr3 175280039 175280350 -52244228 + AluY SINE Alu 1 309 -2 2185 114 7 3 chr3 175280613 175280920 -52243658 + AluSq SINE Alu 5 312 -1 1203 115 26 21 chr3 175281004 175281021 -52243557 + AluSg/x SINE Alu 118 133 -179 2341 105 3 0 chr3 175281021 175281327 -52243251 + AluSp SINE Alu 1 307 -6 1203 115 26 21 chr3 175281327 175281501 -52243077 + AluSg/x SINE Alu 133 310 -2 183 42 0 0 chr3 175282785 175282809 -52241769 + (TTG)n Simple_repeat Simple_repeat 2 25 0 1729 85 0 0 chr3 175282811 175283023 -52241555 - AluSq SINE Alu -31 282 71 627 300 103 52 chr3 175283416 175283516 -52241062 + L2 LINE L2 2618 2711 -603 1840 107 92 0 chr3 175283516 175283820 -52240758 + AluSx SINE Alu 1 328 0 627 300 103 52 chr3 175283820 175284048 -52240530 + L2 LINE L2 2711 2964 -350 3552 29 0 2 chr3 175284160 175284580 -52239998 - L1PA3 LINE L1 0 6155 5737 4081 15 0 0 chr3 175284581 175285106 -52239472 + L1PA3 LINE L1 5219 5743 -412 854 172 93 0 chr3 175285508 175285659 -52238919 - AluJb SINE Alu -12 300 136 2284 106 0 0 chr3 175285675 175285987 -52238591 - AluSx SINE Alu 0 312 1 2372 60 0 0 chr3 175286103 175286438 -52238140 + AluY SINE Alu 1 335 0 21 36 0 0 chr3 175286495 175286523 -52238055 + AT_rich Low_complexity Low_complexity 1 28 0 2608 37 0 0 chr3 175286526 175286824 -52237754 + AluY SINE Alu 1 298 -13 2064 117 20 3 chr3 175287135 175287435 -52237143 + AluSx SINE Alu 1 305 -7 1337 147 0 36 chr3 175287755 175288006 -52236572 - Tigger2 DNA MER2_type -4 2714 2473 2026 135 37 0 chr3 175288006 175288303 -52236275 + AluSg SINE Alu 1 308 -2 1346 80 0 0 chr3 175288303 175288479 -52236099 + AluSg/x SINE Alu 135 310 0 1809 185 0 3 chr3 175288508 175288805 -52235773 + AluJb SINE Alu 1 296 -16 288 132 0 0 chr3 175288909 175288962 -52235616 + L1P4 LINE L1 5728 5780 -388 2512 36 7 3 chr3 175288962 175289265 -52235313 + AluY SINE Alu 1 304 -7 207 333 171 0 chr3 175289675 175289786 -52234792 + MIR SINE MIR 47 176 -86 4793 104 69 51 chr3 175289787 175291218 -52233360 - pTR5 LTR ERV1 0 2606 1524 3920 173 51 50 chr3 175291855 175292703 -52231875 + MER21B LTR ERV1 1 849 -14 357 349 57 37 chr3 175293222 175293574 -52231004 - L2 LINE L2 -1965 1349 991 1005 309 105 4 chr3 175293870 175294326 -52230252 + L2 LINE L2 2375 2876 -438 531 177 44 39 chr3 175294332 175294513 -52230065 + Charlie5 DNA MER1_type 2404 2585 -27 898 280 71 0 chr3 175294532 175294800 -52229778 - MLT2E LTR ERVL -307 321 35 348 366 49 12 chr3 175294841 175295005 -52229573 + L3 LINE CR1 1126 1295 -282 780 339 12 8 chr3 175295109 175295360 -52229218 + L3 LINE CR1 1319 1570 -7 819 266 95 12 chr3 175295747 175295999 -52228579 + L2 LINE L2 2471 2743 -571 495 268 98 30 chr3 175296060 175296396 -52228182 - L1ME4a LINE L1 -47 6074 5716 4006 133 20 126 chr3 175298259 175299807 -52224771 - pTR5 LTR ERV1 0 2606 1524 2408 56 0 23 chr3 175300046 175300352 -52224226 + AluY SINE Alu 1 299 -12 371 331 120 0 chr3 175301061 175301203 -52223375 + MIR SINE MIR 5 163 -99 23 33 0 0 chr3 175301389 175301419 -52223159 + AT_rich Low_complexity Low_complexity 1 30 0 347 325 120 73 chr3 175302262 175303154 -52221424 - L2 LINE L2 -267 3005 2075 1624 199 13 51 chr3 175305089 175305482 -52219096 - MER89 LTR ERV1 0 559 182 225 194 194 0 chr3 175305480 175305547 -52219031 - MER89 LTR ERV1 -479 80 1 * 2105 111 0 0 chr3 175307365 175307644 -52216934 - AluSc SINE Alu -30 279 1 2165 254 49 38 chr3 175307644 175308289 -52216289 + L1ME1 LINE L1 5159 5821 -345 2236 108 7 3 chr3 175308289 175308595 -52215983 + AluSx SINE Alu 1 307 -5 2165 254 49 38 chr3 175308595 175308938 -52215640 + L1ME1 LINE L1 5821 6159 -7 275 247 136 12 chr3 175308965 175309046 -52215532 + MIR3 SINE MIR 115 205 -3 287 191 29 0 chr3 175310047 175310115 -52214463 - MER116 DNA Mariner -5 75 6 237 302 0 0 chr3 175310119 175310182 -52214396 + GA-rich Low_complexity Low_complexity 4 66 0 18164 160 64 24 chr3 175310872 175312853 -52211725 - L1MA3 LINE L1 -212 7512 5612 2591 65 0 0 chr3 175312853 175313160 -52211418 + AluY SINE Alu 2 308 -3 18164 160 64 24 chr3 175313160 175314250 -52210328 - L1MA3 LINE L1 -2112 5612 4567 252 0 0 0 chr3 175314250 175314278 -52210300 + (TTTC)n Simple_repeat Simple_repeat 1 28 0 18164 160 64 24 chr3 175314278 175316206 -52208372 - L1MA3 LINE L1 -3157 4567 2718 2427 84 0 0 chr3 175316206 175316504 -52208074 - AluY SINE Alu -13 298 1 18164 160 64 24 chr3 175316504 175318653 -52205925 - L1MA3 LINE L1 -5006 2718 7 219 323 77 0 chr3 175319138 175319203 -52205375 + MIR SINE MIR 82 151 -111 379 216 54 6 chr3 175319259 175319426 -52205152 + (TA)n Simple_repeat Simple_repeat 2 176 0 975 252 101 74 chr3 175320024 175320631 -52203947 + HAL1b LINE L1 413 1035 -313 1582 252 63 46 chr3 175320661 175321239 -52203339 + L1MCa LINE L1 47 554 -5491 2315 208 53 28 chr3 175321344 175322090 -52202488 + L1MCa LINE L1 569 1341 -4848 387 0 0 0 chr3 175322106 175322149 -52202429 + (CA)n Simple_repeat Simple_repeat 2 44 0 932 215 14 23 chr3 175322212 175322426 -52202152 - L1MC/D LINE L1 -2190 5595 5384 531 189 39 102 chr3 175322428 175322634 -52201944 - L1MC/D LINE L1 -2043 4103 3911 1159 200 149 51 chr3 175322641 175323051 -52201527 - L1MC/D LINE L1 -2171 3975 3526 396 132 13 13 chr3 175323049 175323125 -52201453 + L1MD3 LINE L1 7914 7989 -6 * 2387 78 3 3 chr3 175323140 175323447 -52201131 + AluY SINE Alu 1 307 -4 238 252 86 26 chr3 175323469 175323620 -52200958 + HAL1b LINE L1 1146 1305 -43 517 312 47 12 chr3 175323888 175324058 -52200520 + MIR SINE MIR 17 192 -70 242 263 38 0 chr3 175324105 175324185 -52200393 + (CTA)n Simple_repeat Simple_repeat 3 85 0 1481 230 30 20 chr3 175324264 175324660 -52199918 + MER63B DNA MER1_type 1 400 -36 34 65 0 0 chr3 175324887 175324949 -52199629 + AT_rich Low_complexity Low_complexity 1 62 0 693 214 102 0 chr3 175325169 175325365 -52199213 + LTR33 LTR ERVL 306 521 0 22 56 0 0 chr3 175325594 175325630 -52198948 + AT_rich Low_complexity Low_complexity 1 36 0 362 253 152 30 chr3 175325850 175326048 -52198530 - L1MC/D LINE L1 -2974 3172 2951 860 116 0 0 chr3 175326392 175326559 -52198019 - AluY SINE Alu 0 311 173 2337 74 7 0 chr3 175326869 175327167 -52197411 + AluY SINE Alu 1 300 -11 42211 41 26 1 chr3 175328392 175333917 -52190661 - L1P2 LINE L1 -495 5660 1 224 170 57 0 chr3 175334670 175334723 -52189855 + T-rich Low_complexity Low_complexity 1 56 0 1208 34 0 0 chr3 175334743 175334890 -52189688 + L1PA6 LINE L1 6008 6154 0 305 320 0 0 chr3 175335227 175335330 -52189248 + (CATATA)n Simple_repeat Simple_repeat 4 106 0 240 250 197 0 chr3 175336255 175336331 -52188247 - MIR SINE MIR 0 262 172 225 364 0 0 chr3 175336394 175336460 -52188118 - MIR SINE MIR -196 66 1 1035 287 184 33 chr3 175336557 175337471 -52187107 + L2 LINE L2 2188 3294 -19 244 246 0 0 chr3 175337476 175337533 -52187045 - L1ME LINE L1 -569 5552 5496 256 303 234 0 chr3 175338242 175338417 -52186161 - L2 LINE L2 -4 3309 3094 325 175 25 0 chr3 175338588 175338668 -52185910 + L1PA16 LINE L1 6071 6152 -14 525 298 6 23 chr3 175338912 175339083 -52185495 + L2 LINE L2 3146 3313 0 1592 249 15 65 chr3 175339608 175339625 -52184953 - MLT2B1 LTR ERVL -67 453 437 2230 114 0 3 chr3 175339625 175339932 -52184646 + AluSx SINE Alu 1 306 -6 1592 249 15 65 chr3 175339932 175340391 -52184187 - MLT2B1 LTR ERVL -83 437 1 1904 167 0 0 chr3 175341023 175341316 -52183262 + AluSx SINE Alu 1 293 -19 261 0 0 0 chr3 175341543 175341572 -52183006 + (TA)n Simple_repeat Simple_repeat 2 30 0 2391 99 0 0 chr3 175341572 175341876 -52182702 - AluSq SINE Alu -9 304 1 336 261 281 30 chr3 175342859 175343154 -52181424 + L2 LINE L2 2501 2869 -445 275 315 44 28 chr3 175343152 175343333 -52181245 + L2 LINE L2 3046 3229 -84 * 2047 130 13 0 chr3 175343440 175343739 -52180839 + AluSx SINE Alu 1 303 -9 21 36 0 0 chr3 175344295 175344323 -52180255 + AT_rich Low_complexity Low_complexity 1 28 0 290 237 237 0 chr3 175345136 175345233 -52179345 - MIR SINE MIR -12 250 131 1866 99 25 11 chr3 175345343 175345625 -52178953 - L1PA8 LINE L1 0 6172 5887 463 146 22 0 chr3 175346364 175346453 -52178125 - L1MA5A LINE L1 -5 6292 6202 2672 100 51 3 chr3 175346453 175346842 -52177736 + MLT2A2 LTR ERVL 14 421 -32 5593 152 40 27 chr3 175346924 175348021 -52176557 - L1MA5A LINE L1 -84 6213 5084 2253 121 0 3 chr3 175348021 175348334 -52176244 - AluSx SINE Alu 0 312 1 5593 152 40 27 chr3 175348334 175349274 -52175304 - L1MA5A LINE L1 -1213 5084 4157 241 348 216 13 chr3 175350807 175351192 -52173386 - L2 LINE L2 -586 2728 2266 655 280 9 28 chr3 175351293 175351504 -52173074 + MIR SINE MIR 7 213 -49 289 169 56 0 chr3 175351531 175351602 -52172976 - MER116 DNA Mariner 0 80 6 275 0 29 0 chr3 175352913 175352948 -52171630 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 2321 60 27 10 chr3 175352989 175353289 -52171289 - AluY SINE Alu -6 305 1 21 71 0 0 chr3 175353329 175353371 -52171207 + AT_rich Low_complexity Low_complexity 1 42 0 358 304 43 68 chr3 175353591 175353798 -52170780 + L1ME1 LINE L1 3984 4185 -1961 360 141 24 24 chr3 175353875 175353960 -52170618 + GA-rich Low_complexity Low_complexity 2 86 0 862 255 100 32 chr3 175353967 175354277 -52170301 - MLT1J LTR MaLR -110 401 71 409 278 53 73 chr3 175354416 175354661 -52169917 + L1ME1 LINE L1 5628 5867 -299 24 32 0 0 chr3 175354668 175354699 -52169879 + AT_rich Low_complexity Low_complexity 1 31 0 2265 80 0 0 chr3 175354702 175354988 -52169590 + AluY SINE Alu 17 302 -9 344 302 60 17 chr3 175355125 175355241 -52169337 - MIR SINE MIR -111 151 31 280 383 58 0 chr3 175355847 175355967 -52168611 + L2 LINE L2 3146 3272 0 645 269 159 22 chr3 175356500 175356932 -52167646 + MLT1G LTR MaLR 51 590 0 971 284 251 32 chr3 175356951 175357345 -52167233 + L2 LINE L2 2033 2339 -974 2438 54 0 38 chr3 175357345 175357659 -52166919 - AluY SINE Alu -9 302 1 971 284 251 32 chr3 175357659 175358307 -52166271 + L2 LINE L2 2339 3312 -1 656 290 83 5 chr3 175359799 175360016 -52164562 + MIR SINE MIR 2 235 -27 2344 78 16 10 chr3 175360030 175360339 -52164239 - AluY SINE Alu 0 311 1 226 313 12 12 chr3 175360383 175360463 -52164115 - L2 LINE L2 -16 3297 3218 1149 283 71 36 chr3 175360525 175361271 -52163307 + L2 LINE L2 2544 3312 -1 315 111 0 0 chr3 175361371 175361416 -52163162 - MADE1 DNA Mariner -35 45 1 1385 190 75 3 chr3 175361425 175361720 -52162858 + Tigger3(Golem) DNA MER2_type 2 317 -2712 225 197 42 0 chr3 175361725 175361796 -52162782 + (TA)n Simple_repeat Simple_repeat 2 75 0 1763 76 0 0 chr3 175361799 175362024 -52162554 + Tigger3b DNA MER2_type 347 571 -660 4521 236 33 4 chr3 175362024 175363545 -52161033 + L1M1 LINE L1 3492 5105 -2460 350 155 0 12 chr3 175363546 175363630 -52160948 + (TA)n Simple_repeat Simple_repeat 1 83 0 255 138 0 69 chr3 175363630 175363688 -52160890 + L1M1 LINE L1 5052 5105 -2460 312 264 0 46 chr3 175363689 175363776 -52160802 + L1MC4 LINE L1 6621 6703 -1339 * 361 224 29 0 chr3 175363764 175363868 -52160710 + L1MC4 LINE L1 1995 6983 -1339 2156 110 3 3 chr3 175363886 175364178 -52160400 + AluSc SINE Alu 4 295 -14 8225 205 19 20 chr3 175364178 175366176 -52158402 + L1 LINE L1 2968 4963 -1183 2767 110 28 65 chr3 175366178 175366641 -52157937 - MLT2A2 LTR ERVL -7 446 1 6097 66 34 0 chr3 175366641 175367441 -52157137 - HERVL-A2 LTR ERVL 0 5654 4828 2087 89 63 0 chr3 175367441 175367743 -52156835 + L1PB1 LINE L1 5462 5782 -369 670 22 33 0 chr3 175367745 175367836 -52156742 + (TAGA)n Simple_repeat Simple_repeat 1 94 0 613 118 11 11 chr3 175367841 175367934 -52156644 + AluSq/x SINE Alu 14 106 -207 2138 136 11 24 chr3 175367941 175368315 -52156263 + L1PB1 LINE L1 5783 6151 0 9906 123 102 90 chr3 175368384 175369597 -52154981 + Tigger1 DNA MER2_type 278 1475 -943 1755 164 7 0 chr3 175369597 175369871 -52154707 + AluSx SINE Alu 1 276 -36 9906 123 102 90 chr3 175369871 175369919 -52154659 + Tigger1 DNA MER2_type 1475 1521 -897 327 49 0 0 chr3 175369919 175369960 -52154618 + (GGAA)n Simple_repeat Simple_repeat 4 44 0 9906 123 102 90 chr3 175369960 175370812 -52153766 + Tigger1 DNA MER2_type 1521 2417 -1 1314 158 23 0 chr3 175370813 175371028 -52153550 + Tigger3b DNA MER2_type 1012 1231 0 2430 79 3 0 chr3 175371504 175371807 -52152771 - AluSp SINE Alu -9 304 1 369 298 84 0 chr3 175372085 175372216 -52152362 - MIR SINE MIR -21 241 100 519 322 29 6 chr3 175372843 175373014 -52151564 - MIR3 SINE MIR -18 190 16 2378 65 10 3 chr3 175373855 175374148 -52150430 + AluSc SINE Alu 1 295 -14 1293 109 0 0 chr3 175374295 175374460 -52150118 + AluSx SINE Alu 1 165 -147 482 326 73 50 chr3 175374925 175375308 -52149270 + L3 LINE CR1 370 761 -816 2073 147 46 20 chr3 175376040 175376387 -52148191 - MSTC LTR MaLR -4 424 69 380 71 80 9 chr3 175376484 175376597 -52147981 + (TA)n Simple_repeat Simple_repeat 1 121 0 2988 63 0 0 chr3 175376599 175376979 -52147599 - L1PA8 LINE L1 -10 6162 5783 475 184 0 0 chr3 175376981 175377057 -52147521 - MSTC LTR MaLR -315 81 6 522 262 194 24 chr3 175377169 175377375 -52147203 - L2 LINE L2 -7 3306 3066 2191 50 0 60 chr3 175377950 175378276 -52146302 - AluY SINE Alu 0 308 1 23 0 0 0 chr3 175378279 175378302 -52146276 + AT_rich Low_complexity Low_complexity 1 23 0 831 121 85 0 chr3 175378675 175378816 -52145762 + L1PA16 LINE L1 5756 5908 -258 5346 185 14 12 chr3 175378816 175378969 -52145609 + L1PA15 LINE L1 4182 4333 -1832 2217 99 7 0 chr3 175378969 175379263 -52145315 + AluSq SINE Alu 1 296 -17 5346 185 14 12 chr3 175379263 175381053 -52143525 + L1PA15 LINE L1 4333 6164 -1 1452 185 7 7 chr3 175381053 175381324 -52143254 + L1PA16 LINE L1 5879 6165 -1 692 304 74 26 chr3 175381635 175381865 -52142713 + MIR SINE MIR 7 247 -15 268 151 19 0 chr3 175381932 175381985 -52142593 + MER103 DNA DNA 7 60 -106 23 78 0 0 chr3 175383672 175383723 -52140855 + AT_rich Low_complexity Low_complexity 1 51 0 393 284 57 21 chr3 175383733 175384032 -52140546 - L1MC/D LINE L1 -490 5631 5492 206 121 0 0 chr3 175385579 175385612 -52138966 + (T)n Simple_repeat Simple_repeat 1 33 0 228 24 48 24 chr3 175385720 175385762 -52138816 + (TC)n Simple_repeat Simple_repeat 1 43 0 8114 212 9 16 chr3 175385879 175387730 -52136848 - L1PA13 LINE L1 -1014 5783 3945 4643 217 18 36 chr3 175387719 175389005 -52135573 - L1PA13 LINE L1 -3557 3240 1989 * 2233 127 0 0 chr3 175389005 175389312 -52135266 - AluSq SINE Alu -6 307 1 4643 217 18 36 chr3 175389312 175390025 -52134553 - L1PA13 LINE L1 -4808 1989 1265 1588 315 71 11 chr3 175390167 175390713 -52133865 - L1PA13 LINE L1 -6136 651 73 1813 190 28 19 chr3 175390716 175390767 -52133811 - L1 LINE L1 -1251 4895 4846 2096 160 41 50 chr3 175390767 175391205 -52133373 + Tigger2a DNA MER2_type 1 434 0 1813 190 28 19 chr3 175391205 175391580 -52132998 - L1 LINE L1 -1300 4846 4465 566 203 0 30 chr3 175391587 175391720 -52132858 + L1MA3 LINE L1 5122 5250 -896 1786 209 0 0 chr3 175391728 175392035 -52132543 + AluJb SINE Alu 1 307 -5 13969 208 44 14 chr3 175392054 175396296 -52128282 + L1PA13 LINE L1 576 4964 -1833 1566 154 17 14 chr3 175396301 175396594 -52127984 + L1MA3 LINE L1 5724 6017 -288 1947 185 26 17 chr3 175396596 175396638 -52127940 + L1MB1 LINE L1 5745 5785 -383 2932 158 27 73 chr3 175396638 175397269 -52127309 + MER7C DNA MER2_type 1 602 0 1947 185 26 17 chr3 175397269 175397643 -52126935 + L1MB1 LINE L1 5785 6165 -3 308 270 49 18 chr3 175397652 175397815 -52126763 + L1M4 LINE L1 2489 2656 -3490 23 0 0 0 chr3 175397847 175397870 -52126708 + AT_rich Low_complexity Low_complexity 1 23 0 219 146 49 0 chr3 175397876 175397917 -52126661 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 5907 82 75 31 chr3 175397925 175398953 -52125625 - L1PA8 LINE L1 -13 6159 5117 429 20 0 0 chr3 175399184 175399234 -52125344 + (CA)n Simple_repeat Simple_repeat 1 50 0 316 75 38 25 chr3 175399299 175399379 -52125199 + (TCTA)n Simple_repeat Simple_repeat 4 84 0 244 83 28 0 chr3 175399586 175399622 -52124956 - Alu SINE Alu -265 37 1 193 274 130 36 chr3 175399759 175399925 -52124653 - MIR SINE MIR -49 213 32 922 233 55 0 chr3 175400182 175400384 -52124194 - MER20 DNA MER1_type 0 219 7 2201 56 7 21 chr3 175400708 175401018 -52123560 - AluY SINE Alu 0 306 1 1471 230 33 23 chr3 175401311 175401707 -52122871 + MER63B DNA MER1_type 1 400 -36 5649 165 20 38 chr3 175401795 175403870 -52120708 - L1MA4 LINE L1 -58 7661 5621 1998 152 17 17 chr3 175403870 175404225 -52120353 - THE1A LTR MaLR 0 355 1 8684 105 26 0 chr3 175404225 175405413 -52119165 - THE1A-int LTR MaLR 0 1580 362 * 12117 32 0 0 chr3 175405411 175406895 -52117683 - L1PA3 LINE L1 -2254 3892 2409 12559 31 1 0 chr3 175406895 175409161 -52115417 + L1PA3 LINE L1 3887 6152 -3 2759 66 27 0 chr3 175409172 175409537 -52115041 - THE1A-int LTR MaLR -1205 375 1 306 0 0 0 chr3 175409566 175409600 -52114978 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1717 152 14 10 chr3 175409600 175409897 -52114681 - THE1A LTR MaLR -57 298 1 1021 208 0 0 chr3 175409897 175410089 -52114489 - L1MA4 LINE L1 -1940 5625 5434 * 2367 222 37 57 chr3 175410079 175411345 -52113233 - L1MA4 LINE L1 -3549 4016 2774 23 0 0 0 chr3 175412038 175412061 -52112517 + AT_rich Low_complexity Low_complexity 1 23 0 415 261 54 0 chr3 175413377 175413488 -52111090 - L2 LINE L2 0 3313 3197 33 25 0 0 chr3 175413530 175413570 -52111008 + AT_rich Low_complexity Low_complexity 1 40 0 5844 151 32 29 chr3 175413575 175415701 -52108877 - L1MA6 LINE L1 -17 6283 4130 21 36 0 0 chr3 175416589 175416617 -52107961 + AT_rich Low_complexity Low_complexity 1 28 0 956 216 10 0 chr3 175417540 175417744 -52106834 + MER3 DNA MER1_type 2 207 -2 480 272 69 53 chr3 175417772 175418018 -52106560 - MLT1K LTR MaLR -3 585 336 315 313 101 0 chr3 175418699 175418798 -52105780 - MER5B DNA MER1_type -63 115 7 488 275 89 94 chr3 175419126 175419497 -52105081 + HAL1b LINE L1 1 369 -979 2501 195 10 73 chr3 175419735 175420324 -52104254 - MLT2B3 LTR ERVL -2 552 1 410 306 125 21 chr3 175420862 175421150 -52103428 - MLT1L LTR MaLR -44 571 254 284 137 77 0 chr3 175421387 175421504 -52103074 + (TA)n Simple_repeat Simple_repeat 1 126 0 301 279 129 20 chr3 175422230 175422377 -52102201 + L1ME LINE L1 5507 5669 -452 303 28 0 0 chr3 175422458 175422494 -52102084 + (TG)n Simple_repeat Simple_repeat 1 36 0 2112 127 0 9 chr3 175423014 175423330 -52101248 + AluSq SINE Alu 1 313 0 24 32 0 0 chr3 175423452 175423483 -52101095 + AT_rich Low_complexity Low_complexity 1 31 0 580 12 0 49 chr3 175423776 175423858 -52100720 + L1PA3 LINE L1 6078 6155 0 389 278 47 41 chr3 175424627 175424796 -52099782 - L2 LINE L2 -8 3305 3136 2436 66 0 10 chr3 175424875 175425179 -52099399 - AluY SINE Alu -10 301 1 324 120 0 0 chr3 175425190 175425200 -52099378 + (TG)n Simple_repeat Simple_repeat 1 60 0 324 120 0 0 chr3 175425200 175425250 -52099328 + (TG)n Simple_repeat Simple_repeat 2 51 0 238 239 119 15 chr3 175425293 175425360 -52099218 - MIR SINE MIR -33 229 156 3650 36 7 2 chr3 175425524 175425968 -52098610 - L1PA5 LINE L1 0 6154 5709 350 304 54 38 chr3 175426262 175426534 -52098044 - L1MC/D LINE L1 -425 5753 5536 236 240 171 7 chr3 175426595 175426741 -52097837 - L1MC/D LINE L1 -693 5428 5259 387 41 0 0 chr3 175426800 175426849 -52097729 + (TA)n Simple_repeat Simple_repeat 2 50 0 630 272 24 93 chr3 175426853 175427099 -52097479 - MIR SINE MIR -26 236 8 409 306 79 89 chr3 175427120 175427458 -52097120 - L1MC/D LINE L1 -1010 5136 4803 567 137 60 8 chr3 175427458 175427575 -52097003 - L1PB2 LINE L1 -1 6150 6028 409 306 79 89 chr3 175427575 175427706 -52096872 - L1MC/D LINE L1 -1343 4803 4672 1979 126 33 3 chr3 175427785 175428087 -52096491 - AluSx SINE Alu -1 311 1 509 166 89 76 chr3 175428725 175428882 -52095696 - LTR45 LTR ERV1 0 525 331 314 276 135 31 chr3 175429236 175429399 -52095179 - L1M4 LINE L1 -373 5801 5622 1002 240 137 21 chr3 175429399 175429728 -52094850 - MLT1F LTR MaLR 0 542 176 285 98 0 0 chr3 175429794 175429835 -52094743 + (TAGA)n Simple_repeat Simple_repeat 1 41 0 636 70 0 0 chr3 175430124 175430210 -52094368 + (TC)n Simple_repeat Simple_repeat 1 86 0 567 313 49 38 chr3 175430251 175430539 -52094039 - L1M4 LINE L1 -511 5651 5361 697 272 31 30 chr3 175430650 175430926 -52093652 + L1MCa LINE L1 1443 1962 -825 728 129 0 27 chr3 175430989 175431136 -52093442 + (GGAA)n Simple_repeat Simple_repeat 1 143 0 1038 158 0 6 chr3 175431249 175431413 -52093165 + AluJb SINE Alu 142 304 -8 2341 55 0 7 chr3 175432024 175432315 -52092263 - AluY SINE Alu 0 311 23 408 330 104 6 chr3 175435846 175436028 -52088550 - MIR SINE MIR -16 246 47 300 296 82 0 chr3 175436114 175436249 -52088329 + L1ME4a LINE L1 5971 6116 -5 184 361 83 8 chr3 175437069 175437202 -52087376 + MIR3 SINE MIR 58 200 -8 2458 187 24 30 chr3 175438796 175439303 -52085275 + MLT1D LTR MaLR 1 504 -1 208 336 164 0 chr3 175439606 175439722 -52084856 - MIR SINE MIR -81 181 47 2679 13 7 0 chr3 175440132 175440433 -52084145 - AluY SINE Alu -8 303 1 1901 134 7 4 chr3 175440628 175440932 -52083646 + AluSx SINE Alu 5 309 0 5091 102 66 25 chr3 175441014 175442159 -52082419 + L1PA12 LINE L1 4630 5835 -333 2262 111 3 0 chr3 175442159 175442466 -52082112 + AluSc SINE Alu 1 308 -1 5091 102 66 25 chr3 175442466 175442799 -52081779 + L1PA12 LINE L1 5835 6153 -15 198 0 0 0 chr3 175442802 175442824 -52081754 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 2289 115 0 0 chr3 175443161 175443569 -52081009 + AluSx SINE Alu 3 410 0 731 266 30 53 chr3 175443730 175444069 -52080509 + HAL1b LINE L1 211 541 -807 2171 79 11 0 chr3 175444565 175444842 -52079736 + AluY SINE Alu 1 280 -31 3117 113 9 4 chr3 175444842 175445293 -52079285 + LOR1a LTR ERV1 45 497 0 2271 98 0 0 chr3 175445964 175446249 -52078329 + AluSc SINE Alu 1 285 -24 2080 101 7 20 chr3 175447680 175447976 -52076602 + AluSc SINE Alu 1 292 -17 674 298 84 51 chr3 175448141 175448497 -52076081 + L3 LINE CR1 1075 1442 -135 300 351 45 0 chr3 175448936 175449047 -52075531 + L2 LINE L2 3157 3272 0 181 324 95 14 chr3 175449076 175449150 -52075428 - L2 LINE L2 -39 3233 3154 230 286 143 0 chr3 175449185 175449248 -52075330 + L3 LINE CR1 1505 1576 -1 1882 149 44 3 chr3 175449280 175449576 -52075002 + AluJb SINE Alu 1 308 -4 300 70 0 0 chr3 175449593 175449636 -52074942 + (GA)n Simple_repeat Simple_repeat 2 44 0 331 256 145 8 chr3 175449990 175450107 -52074471 - MIR SINE MIR -105 157 25 23 54 0 0 chr3 175450434 175450471 -52074107 + AT_rich Low_complexity Low_complexity 1 37 0 1156 335 82 39 chr3 175451983 175452805 -52071773 - HERV16 LTR ERVL -764 4890 4034 1886 280 54 29 chr3 175452984 175453617 -52070961 - HERV16 LTR ERVL -2670 2326 1673 1857 139 0 77 chr3 175453617 175453823 -52070755 - AluSx SINE Alu -1 311 139 2132 136 0 0 chr3 175453823 175454132 -52070446 - AluSc SINE Alu 0 309 1 1857 139 0 77 chr3 175454132 175454262 -52070316 - AluSx SINE Alu -173 139 1 1886 280 54 29 chr3 175454262 175454313 -52070265 - HERV16 LTR ERVL -3323 1673 1625 206 62 31 0 chr3 175454425 175454457 -52070121 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 262 251 18 88 chr3 175454526 175454697 -52069881 - HERV16 LTR ERVL -4341 1423 1265 1471 305 74 30 chr3 175454729 175455407 -52069171 - HERV16 LTR ERVL -3909 1087 380 600 318 86 55 chr3 175455714 175455927 -52068651 - LTR16A LTR ERVL -1 449 244 4030 162 98 0 chr3 175455927 175456679 -52067899 + LTR1B LTR ERV1 1 826 0 600 318 86 55 chr3 175456679 175456886 -52067692 - LTR16A LTR ERVL -206 244 16 24 32 0 0 chr3 175457813 175457844 -52066734 + AT_rich Low_complexity Low_complexity 1 31 0 219 385 83 0 chr3 175457893 175457989 -52066589 - L2 LINE L2 -20 3252 3149 220 313 75 57 chr3 175458447 175458728 -52065850 - L2 LINE L2 -2277 1037 752 1083 78 7 7 chr3 175459387 175459540 -52065038 - L1PA8 LINE L1 -139 6033 5881 874 100 0 0 chr3 175459540 175459653 -52064925 + L1PA7 LINE L1 6018 6137 -17 5780 63 0 2 chr3 175459664 175460918 -52063660 + L1PA7 LINE L1 4729 5979 -175 395 302 15 78 chr3 175461368 175461573 -52063005 + L2 LINE L2 3122 3313 0 24 32 0 0 chr3 175462257 175462288 -52062290 + AT_rich Low_complexity Low_complexity 1 31 0 2280 102 0 0 chr3 175462659 175462954 -52061624 - AluSc SINE Alu -14 295 1 558 301 58 35 chr3 175463454 175463627 -52060951 + MER5B DNA MER1_type 2 178 0 24 0 0 0 chr3 175463742 175463766 -52060812 + AT_rich Low_complexity Low_complexity 1 24 0 33 0 0 0 chr3 175465229 175465262 -52059316 + AT_rich Low_complexity Low_complexity 1 33 0 286 307 33 20 chr3 175465379 175465529 -52059049 + HAL1 LINE L1 1411 1562 -945 261 0 0 0 chr3 175465585 175465614 -52058964 + (TG)n Simple_repeat Simple_repeat 2 30 0 264 139 0 0 chr3 175465656 175465699 -52058879 - L1M1 LINE L1 -545 5758 5716 34 65 0 0 chr3 175465701 175465763 -52058815 + AT_rich Low_complexity Low_complexity 1 62 0 3842 131 11 22 chr3 175465835 175466461 -52058117 - L1PA15 LINE L1 -5 6160 5542 510 306 67 14 chr3 175466772 175466981 -52057597 + MIR SINE MIR 43 262 0 211 328 0 0 chr3 175467878 175467936 -52056642 + MIR3 SINE MIR 113 170 -38 2077 66 0 0 chr3 175467938 175468194 -52056384 + AluY SINE Alu 37 292 -19 1257 138 26 0 chr3 175468686 175468881 -52055697 - L1P4 LINE L1 -531 5635 5436 4141 29 35 2 chr3 175468994 175469505 -52055073 + L1PA2 LINE L1 5625 6152 -3 285 326 21 7 chr3 175470039 175470183 -52054395 - L1M4 LINE L1 -923 5223 5078 22 0 0 0 chr3 175471004 175471026 -52053552 + AT_rich Low_complexity Low_complexity 1 22 0 22 80 0 0 chr3 175471473 175471523 -52053055 + AT_rich Low_complexity Low_complexity 1 50 0 244 265 0 0 chr3 175471620 175471669 -52052909 + MER5A DNA MER1_type 141 189 0 21 0 0 0 chr3 175471706 175471727 -52052851 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 175472004 175472035 -52052543 + AT_rich Low_complexity Low_complexity 1 31 0 2323 82 7 3 chr3 175472075 175472379 -52052199 + AluY SINE Alu 1 305 -6 232 236 36 0 chr3 175473982 175474037 -52050541 + L2 LINE L2 3216 3272 0 22 0 0 0 chr3 175474063 175474085 -52050493 + AT_rich Low_complexity Low_complexity 1 22 0 483 234 66 15 chr3 175474342 175474479 -52050099 + MIR SINE MIR 40 183 -79 22 80 0 0 chr3 175474847 175474897 -52049681 + AT_rich Low_complexity Low_complexity 1 50 0 488 216 20 0 chr3 175475048 175475150 -52049428 + AluYb8 SINE Alu 4 107 -211 5775 122 8 2 chr3 175575223 175576220 -51948358 + L1PA14 LINE L1 5158 6160 -1 412 305 34 25 chr3 175577066 175577184 -51947394 + L2 LINE L2 3154 3272 0 253 265 15 44 chr3 175577239 175577307 -51947271 - L2 LINE L2 -2 3270 3205 22 0 0 0 chr3 175577807 175577829 -51946749 + AT_rich Low_complexity Low_complexity 1 22 0 441 300 37 41 chr3 175579139 175579313 -51945265 - MIR SINE MIR -63 145 27 23 0 0 0 chr3 175579322 175579345 -51945233 + AT_rich Low_complexity Low_complexity 1 23 0 243 323 60 18 chr3 175580233 175580365 -51944213 + MIR SINE MIR 15 156 -52 348 223 24 127 chr3 175580796 175580962 -51943616 + L2 LINE L2 3164 3312 -1 2448 81 0 6 chr3 175581269 175581589 -51942989 - AluYb8 SINE Alu 0 318 1 1281 186 32 45 chr3 175581600 175581977 -51942601 - L1MD3 LINE L1 0 7995 7624 244 263 95 89 chr3 175583457 175583636 -51940942 - MIR SINE MIR -72 136 9 248 250 0 0 chr3 175583640 175583708 -51940870 + L1P5 LINE L1 5364 5431 -723 484 277 58 70 chr3 175583819 175584249 -51940329 + L1MC4a LINE L1 5607 6032 -89 213 286 41 0 chr3 175587617 175587715 -51936863 + (TA)n Simple_repeat Simple_repeat 1 102 0 1030 251 40 8 chr3 175587883 175588134 -51936444 + MIR SINE MIR 4 262 0 425 237 93 0 chr3 175588324 175588442 -51936136 + MER3 DNA MER1_type 2 130 -79 2048 128 0 44 chr3 175589383 175589702 -51934876 + AluSx SINE Alu 1 305 -7 409 263 28 110 chr3 175590664 175590837 -51933741 - L1MEc LINE L1 -5409 987 862 1244 72 0 12 chr3 175590837 175591003 -51933575 - L1PA11 LINE L1 0 6174 6011 409 263 28 110 chr3 175591003 175591220 -51933358 - L1MEc LINE L1 -5534 862 629 314 298 136 62 chr3 175591328 175591637 -51932941 - L1MEc LINE L1 -5873 523 192 23 0 0 0 chr3 175592228 175592251 -51932327 + AT_rich Low_complexity Low_complexity 1 23 0 544 271 71 42 chr3 175592300 175592724 -51931854 - HAL1b LINE L1 -91 1257 822 337 358 113 31 chr3 175592749 175593202 -51931376 - L1MC4 LINE L1 -5 8037 7548 24 53 0 0 chr3 175593597 175593635 -51930943 + AT_rich Low_complexity Low_complexity 1 38 0 22 0 0 0 chr3 175593748 175593770 -51930808 + GC_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr3 175593770 175593800 -51930778 + AT_rich Low_complexity Low_complexity 1 30 0 239 193 110 14 chr3 175593903 175594048 -51930530 - AluSx SINE Alu -142 160 2 338 203 89 109 chr3 175594189 175594391 -51930187 + MIR SINE MIR 23 220 -42 433 291 96 18 chr3 175594447 175594667 -51929911 + MIR SINE MIR 20 256 -6 23 0 0 0 chr3 175595724 175595747 -51928831 + AT_rich Low_complexity Low_complexity 1 23 0 193 0 94 0 chr3 175595811 175595843 -51928735 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 529 217 43 0 chr3 175596113 175596228 -51928350 - L2 LINE L2 0 3313 3194 235 312 84 53 chr3 175596833 175597192 -51927386 - MLT1K LTR MaLR -18 570 201 3103 155 10 2 chr3 175598007 175598582 -51925996 - L1P LINE L1 -813 5333 4754 220 265 43 17 chr3 175598752 175598869 -51925709 + (CCCG)n Simple_repeat Simple_repeat 3 122 0 258 87 33 87 chr3 175598881 175598973 -51925605 + (CCCCG)n Simple_repeat Simple_repeat 2 88 0 1357 51 6 0 chr3 175599107 175599285 -51925293 - L1PA8 LINE L1 -308 5864 5686 983 163 60 8 chr3 175599726 175599978 -51924600 - AluSg1 SINE Alu -2 307 43 1551 140 21 0 chr3 175600734 175600999 -51923579 - AluSq SINE Alu 0 308 39 1796 113 3 4 chr3 175601348 175601729 -51922849 - L1P4 LINE L1 -713 5448 5068 1419 197 16 4 chr3 175602692 175602941 -51921637 - AluJb SINE Alu -60 252 1 7496 81 3 4 chr3 175703469 175704515 -51820063 + L1P LINE L1 3932 4976 -1170 377 336 35 40 chr3 175704728 175704954 -51819624 + L1M4 LINE L1 3486 3710 -2436 210 286 0 0 chr3 175706404 175706460 -51818118 + L2 LINE L2 2593 2648 -666 25 0 0 0 chr3 175706500 175706525 -51818053 + AT_rich Low_complexity Low_complexity 1 25 0 1374 106 0 26 chr3 175706864 175707053 -51817525 + AluSg SINE Alu 2 185 -125 189 308 44 16 chr3 175708844 175708912 -51815666 + MIR SINE MIR 79 147 -80 1993 95 3 14 chr3 175709022 175709307 -51815271 - AluSp SINE Alu -31 282 1 669 144 0 0 chr3 175710065 175710169 -51814409 - L1MC/D LINE L1 -545 5799 5696 637 271 20 10 chr3 175710168 175710367 -51814211 + L1M4 LINE L1 4736 4936 -1210 * 1278 182 13 110 chr3 175710469 175710758 -51813820 - L1 LINE L1 -1263 4883 4640 5684 28 0 0 chr3 175710758 175711428 -51813150 - L1PA4 LINE L1 0 6155 5486 1278 182 13 110 chr3 175711428 175711528 -51813050 - L1 LINE L1 -1506 4640 4532 * 2016 318 36 44 chr3 175711527 175712419 -51812159 - L1P LINE L1 -1576 4570 3686 * 7243 115 10 10 chr3 175712405 175714192 -51810386 + L1PA7 LINE L1 4196 5984 -170 8596 168 24 28 chr3 175717122 175718108 -51806470 + L1MA3 LINE L1 3552 4522 -1698 1827 168 0 0 chr3 175718108 175718412 -51806166 + AluSc SINE Alu 1 304 -5 8596 168 24 28 chr3 175718412 175719365 -51805213 + L1MA3 LINE L1 4522 5477 -743 4833 131 25 7 chr3 175719467 175720283 -51804295 + L1MA3 LINE L1 5466 6295 -10 995 305 51 22 chr3 175720330 175720875 -51803703 + L1ME3A LINE L1 5386 5946 -224 1773 121 15 4 chr3 175720945 175721217 -51803361 + AluSq SINE Alu 30 304 -9 302 295 20 74 chr3 175721222 175721371 -51803207 + L1ME3A LINE L1 5944 6084 -86 182 295 66 0 chr3 175721451 175721512 -51803066 - MIR SINE MIR -38 224 160 342 226 132 28 chr3 175721555 175721661 -51802917 - MIR SINE MIR -82 180 64 411 279 122 42 chr3 175721719 175721981 -51802597 + L1ME4a LINE L1 5643 5925 -196 420 284 58 67 chr3 175722021 175722229 -51802349 + L2 LINE L2 1409 1614 -1700 3443 96 0 2 chr3 175722903 175723405 -51801173 - L1PA4 LINE L1 -169 5986 5486 712 213 10 151 chr3 175723397 175723702 -51800876 - L1 LINE L1 -1509 4637 4376 * 30 0 0 0 chr3 175723767 175723797 -51800781 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr3 175723834 175723862 -51800716 + AT_rich Low_complexity Low_complexity 1 28 0 195 42 0 0 chr3 175724403 175724427 -51800151 + (TTTA)n Simple_repeat Simple_repeat 4 27 0 1828 155 0 0 chr3 175724427 175724705 -51799873 - AluSx SINE Alu -32 280 3 26 0 0 0 chr3 175724753 175724779 -51799799 + AT_rich Low_complexity Low_complexity 1 26 0 21 36 0 0 chr3 175726064 175726092 -51798486 + AT_rich Low_complexity Low_complexity 1 28 0 279 350 112 14 chr3 175726783 175726926 -51797652 + MIR SINE MIR 36 192 -70 460 293 21 0 chr3 175726967 175727107 -51797471 - MIR SINE MIR -1 261 119 610 196 105 50 chr3 175727191 175727367 -51797211 - MER5A DNA MER1_type -1 188 2 2382 15 0 0 chr3 175727410 175727684 -51796894 - L1PA2 LINE L1 0 6155 5882 4026 18 0 1 chr3 175727684 175728279 -51796299 + L1P1 LINE L1 4910 5503 -652 1626 212 0 0 chr3 175728292 175728599 -51795979 - AluJo SINE Alu -5 307 1 180 0 0 0 chr3 175729796 175729816 -51794762 + (CAA)n Simple_repeat Simple_repeat 2 21 0 461 183 97 91 chr3 175730818 175731004 -51793574 + MER53 DNA DNA 3 189 0 201 286 0 0 chr3 175731043 175731092 -51793486 + (CAG)n Simple_repeat Simple_repeat 3 51 0 189 191 119 0 chr3 175731202 175731244 -51793334 + L2 LINE L2 3257 3303 -10 243 0 0 0 chr3 175731256 175731283 -51793295 + (TTTTTA)n Simple_repeat Simple_repeat 4 30 0 3632 136 27 8 chr3 175731428 175732022 -51792556 - MER6A DNA MER2_type 0 605 1 241 329 0 0 chr3 175732275 175732345 -51792233 - MIR SINE MIR -107 101 32 214 323 0 73 chr3 175733132 175733228 -51791350 + MIR SINE MIR 1 89 -173 2333 71 3 3 chr3 175733905 175734215 -51790363 - AluY SINE Alu -1 310 1 909 191 38 6 chr3 175734827 175735010 -51789568 + MER5A DNA MER1_type 1 189 0 4017 180 39 4 chr3 175735785 175737107 -51787471 - L1PB4 LINE L1 -92 6064 4702 1840 218 37 22 chr3 175737322 175737781 -51786797 + MLT1E3 LTR MaLR 159 624 0 2050 145 0 0 chr3 175739606 175739910 -51784668 - AluSx SINE Alu -8 304 1 189 74 0 0 chr3 175740105 175740132 -51784446 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 2163 111 0 0 chr3 175740183 175740480 -51784098 + AluSg SINE Alu 1 297 -13 418 375 64 19 chr3 175740625 175741044 -51783534 - L2 LINE L2 -1887 1427 990 1992 223 30 16 chr3 175741250 175741747 -51782831 - MLT1D LTR MaLR -1 504 1 2310 61 3 14 chr3 175742638 175742934 -51781644 - AluSp SINE Alu -18 295 3 766 142 45 0 chr3 175743286 175743420 -51781158 - L1MA7 LINE L1 0 6291 6152 3668 186 26 48 chr3 175744636 175745409 -51779169 - L1M3f LINE L1 -4391 937 182 489 136 57 0 chr3 175745410 175745498 -51779080 - L1M3f LINE L1 -5233 95 3 2115 181 67 110 chr3 175746953 175747644 -51776934 + MER67B LTR ERV1 1 661 0 531 257 139 27 chr3 175747776 175748250 -51776328 + L1M4 LINE L1 2638 3164 -2982 227 376 29 19 chr3 175748452 175748657 -51775921 + L1M4 LINE L1 3486 3692 -2454 353 326 92 31 chr3 175749359 175750110 -51774468 + L1M4 LINE L1 4531 5327 -819 7021 182 36 19 chr3 175750122 175750230 -51774348 + L1 LINE L1 7 112 -7453 2034 129 0 3 chr3 175750230 175750525 -51774053 - AluSg SINE Alu -16 294 1 7021 182 36 19 chr3 175750525 175751706 -51772872 + L1 LINE L1 112 1318 -6247 5173 183 20 25 chr3 175751702 175752850 -51771728 + L1 LINE L1 4306 5447 -2118 * 18201 38 3 0 chr3 175752951 175755203 -51769375 + L1PA4 LINE L1 1474 3731 -2415 7479 24 12 0 chr3 175755203 175756361 -51768217 + L1PA4 LINE L1 4987 6155 0 630 39 0 0 chr3 175760334 175760411 -51764167 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 235 330 43 97 chr3 175760421 175760606 -51763972 - MIR SINE MIR -73 189 15 368 320 39 6 chr3 175761464 175761620 -51762958 - MIR SINE MIR -6 256 96 23 0 0 0 chr3 175762707 175762730 -51761848 + AT_rich Low_complexity Low_complexity 1 23 0 243 104 0 0 chr3 175762812 175762860 -51761718 - LTR66 LTR ERVL -166 444 397 222 265 0 0 chr3 175762862 175762930 -51761648 + (TA)n Simple_repeat Simple_repeat 1 68 0 236 159 0 0 chr3 175763159 175763203 -51761375 + LTR66 LTR ERVL 395 438 -172 1116 176 36 54 chr3 175764251 175764473 -51760105 + MER20 DNA MER1_type 1 218 -1 4265 44 15 0 chr3 175764919 175765438 -51759140 - L1PA7 LINE L1 -11 6143 5617 212 176 0 0 chr3 175767270 175767304 -51757274 + L2 LINE L2 3257 3290 -23 300 316 99 7 chr3 175768203 175768355 -51756223 + MER20 DNA MER1_type 38 203 -16 2369 274 22 29 chr3 175770447 175771201 -51753377 + L1MEc LINE L1 31 779 -5617 2354 105 0 0 chr3 175772191 175772487 -51752091 - AluSc SINE Alu -13 296 1 641 316 68 38 chr3 175772507 175772976 -51751602 + L3 LINE CR1 990 1472 -105 443 271 85 8 chr3 175773630 175773759 -51750819 + MIR SINE MIR 50 188 -74 2588 59 0 0 chr3 175773805 175774112 -51750466 - AluY SINE Alu -4 307 1 264 111 0 0 chr3 175774996 175775041 -51749537 + (CA)n Simple_repeat Simple_repeat 1 45 0 308 325 78 58 chr3 175775587 175775895 -51748683 + L1ME3A LINE L1 12 325 -5794 652 137 0 0 chr3 175776334 175776429 -51748149 + HY3 scRNA scRNA 1 95 -6 30 27 0 0 chr3 175776431 175776468 -51748110 + AT_rich Low_complexity Low_complexity 1 37 0 479 293 89 37 chr3 175776469 175776954 -51747624 + L1ME3A LINE L1 3564 4073 -2056 2068 122 20 17 chr3 175776984 175777336 -51747242 + L1MA2 LINE L1 5952 6304 0 597 287 77 8 chr3 175777610 175777962 -51746616 + L1ME3A LINE L1 4732 5107 -1022 584 297 95 7 chr3 175777986 175778269 -51746309 + L1ME3A LINE L1 5238 5545 -600 420 252 108 23 chr3 175778272 175778486 -51746092 + L1ME3A LINE L1 5600 5831 -322 525 270 75 13 chr3 175779138 175779364 -51745214 + L1ME3 LINE L1 5083 5322 -824 311 311 52 77 chr3 175779454 175779766 -51744812 + L1ME3 LINE L1 5439 5738 -424 2184 107 0 16 chr3 175779766 175780076 -51744502 + AluSc SINE Alu 1 305 -4 311 311 52 77 chr3 175780076 175780220 -51744358 + L1ME3 LINE L1 5738 5884 -278 21 57 0 0 chr3 175780242 175780277 -51744301 + AT_rich Low_complexity Low_complexity 1 35 0 204 286 100 14 chr3 175780501 175780571 -51744007 + L2 LINE L2 2534 2609 -705 409 215 319 14 chr3 175780590 175781004 -51743574 + L2 LINE L2 2711 3313 0 2191 93 0 4 chr3 175781189 175781469 -51743109 - AluSc SINE Alu -27 282 4 222 242 15 0 chr3 175781568 175781634 -51742944 + (TA)n Simple_repeat Simple_repeat 1 67 0 184 261 0 0 chr3 175784273 175784319 -51740259 - MIR SINE MIR -130 78 33 330 299 116 22 chr3 175784540 175784764 -51739814 - MIR SINE MIR -5 257 13 310 306 81 16 chr3 175785443 175785567 -51739011 - L2 LINE L2 -4 3268 3137 263 105 0 0 chr3 175789439 175789477 -51735101 + Alu SINE Alu 252 289 -13 5820 123 3 3 chr3 175789517 175790390 -51734188 + L1PA14 LINE L1 5271 6143 -18 217 197 28 0 chr3 175790485 175790556 -51734022 + GA-rich Low_complexity Low_complexity 2 74 0 335 331 24 0 chr3 175790776 175790900 -51733678 + L3 LINE CR1 704 830 -747 769 254 80 62 chr3 175790901 175791239 -51733339 + HAL1 LINE L1 2 345 -2162 1382 273 126 58 chr3 175791423 175792846 -51731732 + HAL1 LINE L1 684 2202 -305 26 50 0 0 chr3 175793323 175793363 -51731215 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr3 175794335 175794356 -51730222 + AT_rich Low_complexity Low_complexity 1 21 0 6706 71 3 39 chr3 175794803 175795648 -51728930 - L1PA10 LINE L1 -4 6164 5340 2154 102 10 23 chr3 175795648 175795951 -51728627 - AluY SINE Alu -12 299 1 6706 71 3 39 chr3 175795951 175796176 -51728402 - L1PA10 LINE L1 -828 5340 5108 10313 174 31 5 chr3 175796176 175797405 -51727173 + L1P LINE L1 2436 3632 -2514 228 67 0 0 chr3 175797405 175797435 -51727143 + (CAA)n Simple_repeat Simple_repeat 3 32 0 10313 174 31 5 chr3 175797435 175798253 -51726325 + L1P LINE L1 3632 4608 -1538 2577 54 0 0 chr3 175798253 175798550 -51726028 - AluY SINE Alu -14 297 1 10313 174 31 5 chr3 175798550 175799046 -51725532 + L1P LINE L1 4608 5090 -1056 293 89 22 0 chr3 175799048 175799093 -51725485 - L1P LINE L1 -1063 5083 5038 1886 261 109 11 chr3 175799841 175800381 -51724197 - MLT1E LTR MaLR 0 593 1 320 247 41 21 chr3 175800927 175801024 -51723554 + L3 LINE CR1 646 744 -833 2051 159 118 20 chr3 175801053 175801443 -51723135 + MSTA LTR MaLR 1 428 0 9108 150 11 38 chr3 175801445 175803067 -51721511 + MSTA-int LTR MaLR 3 1580 0 1814 118 169 74 chr3 175803067 175803417 -51721161 + MSTA LTR MaLR 1 393 -35 2237 111 0 19 chr3 175803417 175803732 -51720846 - AluY SINE Alu -2 309 1 1814 118 169 74 chr3 175803732 175803772 -51720806 + MSTA LTR MaLR 393 428 0 235 314 167 19 chr3 175803773 175803929 -51720649 + MIR SINE MIR 54 232 -30 565 365 116 21 chr3 175804068 175804544 -51720034 + L3 LINE CR1 782 1302 -275 672 283 42 31 chr3 175804748 175805034 -51719544 - L1MEd LINE L1 -4867 1252 964 660 291 95 93 chr3 175806379 175806799 -51717779 - MLT1K LTR MaLR -167 421 1 3350 124 0 0 chr3 175806856 175807346 -51717232 - L1PA7 LINE L1 -1957 4189 3700 7748 108 29 3 chr3 175807347 175809277 -51715301 + L1PA7 LINE L1 4196 6152 -2 319 293 47 76 chr3 175809339 175809512 -51715066 - MLT1J2 LTR MaLR -26 485 254 338 43 21 0 chr3 175809527 175809574 -51715004 + MADE1 DNA Mariner 1 48 -32 290 252 131 9 chr3 175809652 175809759 -51714819 - MLT1J2 LTR MaLR -294 156 37 32 26 0 0 chr3 175810044 175810083 -51714495 + AT_rich Low_complexity Low_complexity 1 39 0 416 321 46 8 chr3 175812887 175813018 -51711560 + MIR SINE MIR 54 189 -73 534 198 31 0 chr3 175813103 175813199 -51711379 + LTR53 LTR ERVL 23 121 -398 1624 202 36 25 chr3 175813403 175813764 -51710814 - MLT1A1 LTR MaLR 0 365 1 1800 179 3 3 chr3 175813827 175814129 -51710449 + AluJb SINE Alu 1 302 -10 247 231 0 0 chr3 175814727 175814779 -51709799 - MIR3 SINE MIR 0 208 157 223 303 121 30 chr3 175815122 175815221 -51709357 + L2 LINE L2 3126 3233 -39 2334 177 24 9 chr3 175815330 175815783 -51708795 + MER65C LTR ERV1 1 460 -1 433 270 37 18 chr3 175817596 175817759 -51706819 - Charlie8 DNA MER1_type -2238 179 14 193 325 52 0 chr3 175817775 175817852 -51706726 + MIR3 SINE MIR 111 191 -17 284 286 219 0 chr3 175818481 175818600 -51705978 + L2 LINE L2 2613 2757 -557 552 256 10 9 chr3 175818644 175818813 -51705765 + MLT1H LTR MaLR 5 210 -339 2246 136 0 0 chr3 175818817 175819125 -51705453 + AluSx SINE Alu 5 312 0 1152 137 61 0 chr3 175819244 175819441 -51705137 + MER30 DNA MER1_type 1 209 -21 799 253 199 26 chr3 175819593 175820048 -51704530 + L2 LINE L2 2791 3309 -4 1766 184 15 3 chr3 175820536 175820878 -51703700 - L1MC1 LINE L1 0 6333 5988 398 340 31 46 chr3 175821101 175821360 -51703218 + L2 LINE L2 2435 2689 -625 2001 134 0 34 chr3 175821551 175821872 -51702706 - AluSg SINE Alu 0 310 1 23054 62 2 0 chr3 175821992 175825064 -51699514 + L1P LINE L1 11 3087 -3059 204 305 53 53 chr3 175827122 175827217 -51697361 + MIR3 SINE MIR 79 173 -35 213 198 6 0 chr3 175827345 175827393 -51697185 + L2 LINE L2 3216 3290 -8 323 299 96 12 chr3 175828279 175828446 -51696132 + MER20 DNA MER1_type 38 218 -1 376 240 73 70 chr3 175828733 175829104 -51695474 + HAL1 LINE L1 1831 2202 -305 526 199 15 15 chr3 175830585 175830716 -51693862 - L1MB8 LINE L1 -9 6169 6039 506 221 71 8 chr3 175831001 175831128 -51693450 - MIR SINE MIR -26 236 102 623 40 10 50 chr3 175831190 175831289 -51693289 - L1PA2 LINE L1 0 6155 6061 247 254 0 0 chr3 175831956 175832011 -51692567 + (TG)n Simple_repeat Simple_repeat 1 55 0 264 30 0 0 chr3 175832284 175832317 -51692261 + (TG)n Simple_repeat Simple_repeat 2 34 0 28 0 0 0 chr3 175833751 175833779 -51690799 + AT_rich Low_complexity Low_complexity 1 28 0 266 333 99 0 chr3 175834920 175835031 -51689547 + MIR SINE MIR 120 241 -21 187 331 89 40 chr3 175835018 175835142 -51689436 - L2 LINE L2 -9 3304 3175 * 219 378 91 17 chr3 175835390 175835808 -51688770 - L2 LINE L2 -337 2977 2529 345 288 45 45 chr3 175836178 175836310 -51688268 + MIR SINE MIR 32 163 -99 775 347 44 25 chr3 175836866 175837460 -51687118 - L2 LINE L2 0 3313 2708 400 347 17 6 chr3 175838844 175839017 -51685561 + MIR SINE MIR 82 256 -6 691 212 68 85 chr3 175839625 175839932 -51684646 + MER102a DNA MER1_type 28 329 -1 232 276 0 0 chr3 175840751 175840809 -51683769 + L2 LINE L2 2593 2650 -664 1398 101 0 26 chr3 175841209 175841398 -51683180 + AluSg SINE Alu 2 185 -125 215 265 103 0 chr3 175842515 175842583 -51681995 - L2 LINE L2 -1 3312 3238 23 0 0 0 chr3 175843001 175843024 -51681554 + AT_rich Low_complexity Low_complexity 1 23 0 217 304 18 0 chr3 175843124 175843180 -51681398 + L2 LINE L2 3208 3264 -8 597 200 117 17 chr3 175843310 175843490 -51681088 - MLT1F1 LTR MaLR -52 515 318 2410 48 10 3 chr3 175843848 175844138 -51680440 + AluY SINE Alu 1 292 -19 815 174 108 82 chr3 175844269 175844394 -51680184 + L1MD3 LINE L1 7675 7795 -200 2257 114 0 3 chr3 175844394 175844702 -51679876 + AluSg SINE Alu 1 307 -3 815 174 108 82 chr3 175844702 175844881 -51679697 + L1MD3 LINE L1 7795 7987 -8 13381 199 44 13 chr3 175845444 175851562 -51673016 + L1P5 LINE L1 6 6465 -402 998 113 6 0 chr3 175851556 175851716 -51672862 + L1PB1 LINE L1 5628 5788 -363 * 567 66 84 12 chr3 175851735 175851902 -51672676 + (TA)n Simple_repeat Simple_repeat 1 179 0 30 27 0 0 chr3 175851902 175851939 -51672639 + AT_rich Low_complexity Low_complexity 1 37 0 2268 146 0 3 chr3 175851945 175852389 -51672189 + L1PB1 LINE L1 5776 6218 0 1319 224 18 32 chr3 175853017 175853356 -51671222 + MLT1A2 LTR MaLR 34 367 -7 481 266 196 6 chr3 175854412 175854570 -51670008 - MER5A DNA MER1_type -1 188 1 665 186 6 56 chr3 175855608 175855769 -51668809 + MER20B DNA MER1_type 2 154 -65 6080 95 1 10 chr3 175855769 175856991 -51667587 + L1PB1 LINE L1 4949 6163 0 2120 110 3 52 chr3 175856998 175857324 -51667254 + AluSx SINE Alu 3 312 0 22 0 0 0 chr3 175858057 175858079 -51666499 + GC_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 175858091 175858113 -51666465 + GC_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr3 175858322 175858347 -51666231 + GC_rich Low_complexity Low_complexity 1 25 0 360 0 0 0 chr3 175858368 175858408 -51666170 + (A)n Simple_repeat Simple_repeat 1 40 0 2019 164 100 8 chr3 175859801 175860191 -51664387 + MSTB LTR MaLR 1 426 0 7030 50 18 0 chr3 175860334 175861244 -51663334 - L1PA4 LINE L1 -5 6150 5237 16867 33 5 3 chr3 175861244 175863421 -51661157 + L1PA4 LINE L1 3064 5244 -902 405 266 45 40 chr3 175863992 175864169 -51660409 - MER5B DNA MER1_type 0 178 1 438 266 56 79 chr3 175864577 175864791 -51659787 + MER63A DNA MER1_type 2 210 0 2304 100 0 7 chr3 175865546 175865847 -51658731 + AluSx SINE Alu 1 299 -13 749 255 112 0 chr3 175866052 175866248 -51658330 + MIR SINE MIR 7 224 -38 259 358 80 7 chr3 175866314 175866451 -51658127 - MIR SINE MIR -96 166 20 5757 99 7 1 chr3 175866676 175868116 -51656462 - L1PA16 LINE L1 -9 6157 4697 25 0 0 0 chr3 175868116 175868141 -51656437 + AT_rich Low_complexity Low_complexity 1 25 0 5164 97 71 31 chr3 175868143 175868934 -51655644 - L1MA2 LINE L1 -9 6295 5466 2285 101 19 0 chr3 175868934 175869241 -51655337 + AluSp SINE Alu 1 313 0 5164 97 71 31 chr3 175869241 175869295 -51655283 - L1MA2 LINE L1 -838 5466 5416 3114 195 18 6 chr3 175869299 175869955 -51654623 - L1 LINE L1 -1884 4262 3599 2162 64 3 24 chr3 175870128 175870425 -51654153 + AluY SINE Alu 1 291 -20 183 42 0 0 chr3 175870428 175870452 -51654126 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 269 231 31 0 chr3 175870705 175870770 -51653808 + MER103 DNA DNA 75 141 -25 1704 194 11 0 chr3 175870963 175871073 -51653505 + AluJb SINE Alu 6 113 -202 195 100 0 0 chr3 175871073 175871103 -51653475 + (CAA)n Simple_repeat Simple_repeat 1 30 0 1704 194 11 0 chr3 175871103 175871299 -51653279 + AluJb SINE Alu 113 315 0 2523 41 0 44 chr3 175874547 175874865 -51649713 + AluY SINE Alu 1 304 -7 198 103 0 0 chr3 175874947 175874976 -51649602 + (CA)n Simple_repeat Simple_repeat 2 30 0 29 60 0 0 chr3 175875369 175875419 -51649159 + AT_rich Low_complexity Low_complexity 1 50 0 1480 117 25 4 chr3 175875766 175876006 -51648572 + L1MA3 LINE L1 6053 6297 -8 476 264 57 19 chr3 175876134 175876492 -51648086 - L1ME3A LINE L1 -31 6139 5719 492 313 45 6 chr3 175876531 175876710 -51647868 + MLT1E3 LTR MaLR 159 344 -280 280 278 68 23 chr3 175876820 175876996 -51647582 - L1ME3A LINE L1 -265 5905 5722 1882 216 37 22 chr3 175877035 175877494 -51647084 + MLT1E3 LTR MaLR 159 624 0 2134 138 0 0 chr3 175879318 175879623 -51644955 - AluSx SINE Alu -7 305 1 189 74 0 0 chr3 175879818 175879845 -51644733 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 2199 111 0 0 chr3 175879896 175880193 -51644385 + AluSg SINE Alu 1 297 -13 428 372 64 19 chr3 175880338 175880757 -51643821 - L2 LINE L2 -1887 1427 990 2147 211 30 16 chr3 175880962 175881460 -51643118 - MLT1D LTR MaLR 0 505 1 2349 64 3 13 chr3 175882351 175882649 -51641929 - AluSp SINE Alu -18 295 1 735 115 0 0 chr3 175883406 175883510 -51641068 - L1MC/D LINE L1 -534 5799 5696 * 2460 199 20 30 chr3 175883509 175883816 -51640762 + L1MC/D LINE L1 4736 5045 -1288 2300 117 0 0 chr3 175883816 175884123 -51640455 + AluSc SINE Alu 1 307 -2 2460 199 20 30 chr3 175884123 175884799 -51639779 + L1MC/D LINE L1 5045 5708 -625 21 0 0 0 chr3 175884803 175884824 -51639754 + AT_rich Low_complexity Low_complexity 1 21 0 2142 119 3 3 chr3 175885728 175886022 -51638556 + AluSc SINE Alu 1 294 -15 3073 137 10 12 chr3 175886539 175887037 -51637541 + LOR1a LTR ERV1 1 497 0 538 305 55 31 chr3 175887675 175887885 -51636693 - MIR SINE MIR 0 262 43 2414 141 6 3 chr3 175887885 175888248 -51636330 - THE1B LTR MaLR 0 364 1 538 305 55 31 chr3 175888248 175888293 -51636285 - MIR SINE MIR -219 43 1 323 274 38 9 chr3 175888755 175888861 -51635717 + LTR25 LTR ERV1 248 356 -438 225 300 25 25 chr3 175888885 175888965 -51635613 + MER61E LTR ERV1 111 190 -379 1050 164 33 0 chr3 175889043 175889226 -51635352 + MER61E LTR ERV1 341 529 -40 223 159 43 29 chr3 175889248 175889317 -51635261 + (TTATA)n Simple_repeat Simple_repeat 3 72 0 247 282 77 17 chr3 175889431 175889612 -51634966 + L1ME3A LINE L1 4628 4819 -1327 388 300 66 29 chr3 175889714 175890094 -51634484 + L1ME3A LINE L1 4963 5356 -790 551 215 28 0 chr3 175890211 175890318 -51634260 + AluJo SINE Alu 124 233 -79 953 185 6 0 chr3 175890394 175890551 -51634027 + FAM SINE Alu 1 158 -27 466 266 28 34 chr3 175890562 175890739 -51633839 + L1ME3A LINE L1 5477 5652 -510 305 200 0 118 chr3 175890770 175890880 -51633698 - L1MC4 LINE L1 -1332 6710 6614 304 321 34 55 chr3 175890885 175891122 -51633456 + L1ME3A LINE L1 5643 5874 -296 2107 219 71 12 chr3 175891320 175891800 -51632778 + MLT2B1 LTR ERVL 5 512 -8 483 225 71 6 chr3 175892480 175892662 -51631916 + MER20B DNA MER1_type 526 719 -64 2308 57 17 3 chr3 175892813 175893111 -51631467 - AluY SINE Alu -7 304 3 759 142 45 0 chr3 175893463 175893597 -51630981 - L1MA7 LINE L1 0 6291 6152 1417 199 138 50 chr3 175895901 175896358 -51628220 - LTR54B LTR ERV1 -1 497 1 282 337 204 6 chr3 175896818 175896990 -51627588 - MIR SINE MIR -11 251 46 1351 201 89 28 chr3 175897012 175897336 -51627242 + MER2 DNA MER2_type 1 344 0 668 266 31 103 chr3 175898043 175898393 -51626185 - MLT1I LTR MaLR -1 408 84 210 330 11 11 chr3 175898672 175898760 -51625818 - MIR SINE MIR -118 144 57 180 175 66 6 chr3 175900718 175900884 -51623694 + (TA)n Simple_repeat Simple_repeat 1 176 0 225 228 0 18 chr3 175900903 175900960 -51623618 + (TA)n Simple_repeat Simple_repeat 2 57 0 266 220 209 0 chr3 175901287 175901378 -51623200 + L1ME3A LINE L1 5962 6071 -99 356 234 117 14 chr3 175901571 175901716 -51622862 + L2 LINE L2 1549 1708 -1606 1234 229 121 3 chr3 175901812 175902117 -51622461 + MLT1A1 LTR MaLR 25 365 0 821 229 135 11 chr3 175902123 175902390 -51622188 + L2 LINE L2 1751 2050 -1264 24 32 0 0 chr3 175902601 175902632 -51621946 + AT_rich Low_complexity Low_complexity 1 31 0 197 314 86 9 chr3 175902863 175902968 -51621610 - L2 LINE L2 -14 3299 3187 568 276 26 73 chr3 175903309 175903501 -51621077 - MER63A DNA MER1_type -2 208 26 321 197 7 129 chr3 175903498 175903645 -51620933 + LTR37A LTR ERV1 298 426 0 * 1440 239 186 17 chr3 175904068 175904179 -51620399 + MLT2F LTR ERVL 54 145 -518 186 43 0 0 chr3 175904179 175904202 -51620376 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2149 103 3 0 chr3 175904205 175904487 -51620091 - AluSp SINE Alu -30 283 1 1440 239 186 17 chr3 175904487 175904893 -51619685 + MLT2F LTR ERVL 146 663 0 291 255 32 0 chr3 175905819 175905913 -51618665 + HAL1b LINE L1 610 706 -642 22 56 0 0 chr3 175906120 175906156 -51618422 + AT_rich Low_complexity Low_complexity 1 36 0 270 272 147 22 chr3 175906753 175906937 -51617641 + L1ME LINE L1 5378 5584 -537 911 200 58 97 chr3 175908206 175908586 -51615992 - L1ME3A LINE L1 -9 6161 5797 1449 206 67 6 chr3 175908599 175908915 -51615663 + MER58B DNA MER1_type 6 340 -1 1003 229 84 63 chr3 175908915 175909282 -51615296 - L1ME3A LINE L1 -373 5797 5423 553 208 62 62 chr3 175909295 175909569 -51615009 - L1ME3A LINE L1 -1727 4419 4146 282 160 0 0 chr3 175909570 175909620 -51614958 + CT-rich Low_complexity Low_complexity 1 50 0 235 114 0 0 chr3 175909621 175909656 -51614922 + (TC)n Simple_repeat Simple_repeat 2 36 0 1032 255 19 73 chr3 175909662 175910089 -51614489 - L1ME3A LINE L1 -1996 4150 3747 1621 247 15 36 chr3 175910089 175910559 -51614019 - LTR40b LTR ERVL 0 462 3 629 231 89 0 chr3 175910619 175910788 -51613790 - HERVL40 LTR ERVL -70 5460 5277 3121 141 11 2 chr3 175910788 175911249 -51613329 - MER1A DNA MER1_type 0 529 65 357 231 0 26 chr3 175911430 175911508 -51613070 - HERVL40 LTR ERVL -239 2798 2723 1302 198 106 7 chr3 175911857 175912140 -51612438 - AluY SINE Alu 0 311 1 470 290 60 20 chr3 175912562 175912809 -51611769 - HERVL40 LTR ERVL -704 4660 2202 630 229 24 48 chr3 175912920 175912953 -51611625 - LTR40a LTR ERVL -357 162 130 477 0 34 0 chr3 175912953 175913012 -51611566 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2140 69 14 38 chr3 175913012 175913302 -51611276 - AluY SINE Alu -1 341 1 630 229 24 48 chr3 175913302 175913433 -51611145 - LTR40a LTR ERVL -387 132 1 2419 146 21 47 chr3 175913471 175913943 -51610635 - MER65C LTR ERV1 0 461 2 594 254 30 0 chr3 175913946 175914115 -51610463 - L1ME3A LINE L1 -2440 3706 3533 282 296 80 13 chr3 175914662 175914888 -51609690 + L1ME4a LINE L1 5584 5824 -297 226 286 100 7 chr3 175914966 175915106 -51609472 + L1ME4a LINE L1 5964 6116 -5 487 212 17 8 chr3 175915473 175915591 -51608987 - L1MD1 LINE L1 -20 6222 6104 1876 221 0 12 chr3 175915595 175916021 -51608557 - L1P LINE L1 -809 5337 4917 * 3533 199 10 19 chr3 175916017 175916811 -51607767 + L1P LINE L1 4136 4922 -1224 371 183 37 0 chr3 175916814 175916896 -51607682 - L1MD1 LINE L1 -279 5963 5879 4911 248 46 28 chr3 175917043 175917389 -51607189 - L1M4 LINE L1 -1209 4937 4599 2240 119 0 3 chr3 175917389 175917701 -51606877 - AluY SINE Alu 0 311 1 4911 248 46 28 chr3 175917701 175918933 -51605645 - L1M4 LINE L1 -1547 4599 3324 1884 174 30 6 chr3 175918933 175919266 -51605312 - MER2 DNA MER2_type 0 344 4 4911 248 46 28 chr3 175919266 175919344 -51605234 - L1M4 LINE L1 -2822 3324 3249 208 368 0 15 chr3 175920923 175920991 -51603587 - L3 LINE CR1 -13 1564 1498 1076 255 24 8 chr3 175921310 175921565 -51603013 - MER90 LTR ERV1 0 614 356 243 364 18 18 chr3 175921860 175921970 -51602608 - MER5A DNA MER1_type -26 163 54 1810 138 0 44 chr3 175922033 175922330 -51602248 + AluSx SINE Alu 1 284 -28 389 324 101 14 chr3 175922717 175923004 -51601574 - L1ME3A LINE L1 -295 5875 5564 276 30 0 0 chr3 175923016 175923049 -51601529 + (TG)n Simple_repeat Simple_repeat 2 34 0 302 169 15 0 chr3 175923147 175923212 -51601366 + (TA)n Simple_repeat Simple_repeat 1 66 0 320 280 18 45 chr3 175923323 175923537 -51601041 - L1ME3A LINE L1 -739 5432 5255 228 67 0 0 chr3 175924868 175924898 -51599680 + (CA)n Simple_repeat Simple_repeat 1 30 0 564 268 60 33 chr3 175925312 175925495 -51599083 - MIR SINE MIR -74 188 1 575 335 83 0 chr3 175926889 175927131 -51597447 - MIR SINE MIR 0 262 1 486 225 22 0 chr3 175927731 175927869 -51596709 - Charlie2 DNA MER1_type -32 2830 2690 1666 260 148 17 chr3 175927882 175928673 -51595905 + Zaphod DNA AcHobo 2 990 -3041 998 240 68 25 chr3 175928672 175928804 -51595774 + Zaphod DNA AcHobo 3596 3721 -310 * 2561 53 0 0 chr3 175928804 175929108 -51595470 - AluY SINE Alu -7 304 1 998 240 68 25 chr3 175929108 175929371 -51595207 + Zaphod DNA AcHobo 3721 4008 -23 251 213 0 0 chr3 175929394 175929441 -51595137 - Charlie2 DNA MER1_type -186 2676 2630 394 214 11 0 chr3 175929480 175929569 -51595009 - L1MA8 LINE L1 -7 6284 6195 657 180 134 57 chr3 175929623 175929945 -51594633 - Charlie2 DNA MER1_type -292 2570 2110 2440 67 0 0 chr3 175929945 175930242 -51594336 - AluY SINE Alu -14 297 1 657 180 134 57 chr3 175930242 175930290 -51594288 - Charlie2 DNA MER1_type -752 2110 2067 1254 276 80 36 chr3 175930380 175931084 -51593494 + L2 LINE L2 2574 3304 -9 876 222 118 83 chr3 175931087 175931425 -51593153 - MLT1E3 LTR MaLR 0 624 289 493 257 0 74 chr3 175931448 175931596 -51592982 - MLT1E3 LTR MaLR -517 137 1 22 0 0 0 chr3 175931603 175931625 -51592953 + AT_rich Low_complexity Low_complexity 1 22 0 661 267 183 11 chr3 175931690 175931952 -51592626 - Charlie2 DNA MER1_type -2554 308 2 949 176 58 29 chr3 175932152 175932357 -51592221 + AluJo SINE Alu 16 226 -86 22 56 0 0 chr3 175932506 175932542 -51592036 + AT_rich Low_complexity Low_complexity 1 36 0 222 265 147 0 chr3 175932657 175932725 -51591853 + L2 LINE L2 3225 3302 -11 445 309 22 45 chr3 175933361 175933539 -51591039 + MER5B DNA MER1_type 1 174 -4 233 367 13 0 chr3 175933548 175933627 -51590951 + L2 LINE L2 3153 3232 -40 26 30 0 0 chr3 175933773 175933806 -51590772 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr3 175933865 175933888 -51590690 + AT_rich Low_complexity Low_complexity 1 23 0 272 189 151 38 chr3 175934134 175934240 -51590338 - MLT1L LTR MaLR -9 606 489 236 240 60 80 chr3 175934800 175934900 -51589678 - L2 LINE L2 -520 2794 2697 417 342 104 0 chr3 175934994 175935187 -51589391 - L2 LINE L2 -665 2649 2437 276 326 41 0 chr3 175935266 175935364 -51589214 + U6 snRNA snRNA 6 107 0 22 0 0 0 chr3 175935502 175935524 -51589054 + AT_rich Low_complexity Low_complexity 1 22 0 183 163 209 0 chr3 175935943 175935986 -51588592 - L2 LINE L2 -972 2342 2291 510 214 0 92 chr3 175937298 175937429 -51587149 - L2 LINE L2 0 3313 3195 1430 253 107 26 chr3 175939128 175939635 -51584943 - MER77 LTR ERV1 -4 601 54 2559 227 6 31 chr3 175939900 175940233 -51584345 - MER68 LTR ERV1 0 562 247 803 279 114 18 chr3 175940233 175940627 -51583951 + MER57B LTR ERV1 3 434 0 2559 227 6 31 chr3 175940627 175940834 -51583744 - MER68 LTR ERV1 -315 247 36 1106 106 6 6 chr3 175941785 175941946 -51582632 + L1P3 LINE L1 2 162 -5713 6253 67 23 6 chr3 175941948 175943660 -51580918 + L1PA8A LINE L1 4386 6130 -1 205 383 42 18 chr3 175943706 175943873 -51580705 - L2 LINE L2 -927 2387 2217 2592 48 0 0 chr3 175943896 175944207 -51580371 - AluY SINE Alu 0 311 1 249 98 0 0 chr3 175944478 175944519 -51580059 + (CA)n Simple_repeat Simple_repeat 2 42 0 539 265 99 18 chr3 175945453 175945676 -51578902 + L2 LINE L2 3073 3313 0 351 301 30 36 chr3 175947086 175947252 -51577326 + MLT1J LTR MaLR 330 494 -17 672 274 67 75 chr3 175951611 175952133 -51572445 + HAL1b LINE L1 67 584 -764 305 276 31 63 chr3 175952150 175952277 -51572301 + HAL1b LINE L1 659 781 -567 364 277 6 108 chr3 175952939 175953105 -51571473 - MIR SINE MIR 0 262 114 209 379 86 0 chr3 175953144 175953260 -51571318 + MIR SINE MIR 31 156 -106 186 43 0 0 chr3 175953378 175953401 -51571177 + (TTA)n Simple_repeat Simple_repeat 1 23 0 29 28 0 0 chr3 175954770 175954806 -51569772 + AT_rich Low_complexity Low_complexity 1 36 0 321 68 0 0 chr3 175956035 175956079 -51568499 + (CA)n Simple_repeat Simple_repeat 1 44 0 23 0 0 0 chr3 175956139 175956162 -51568416 + AT_rich Low_complexity Low_complexity 1 23 0 2262 94 3 0 chr3 175956165 175956463 -51568115 + AluSq SINE Alu 1 299 -14 1011 156 0 0 chr3 175956463 175956642 -51567936 + (TA)n Simple_repeat Simple_repeat 2 180 0 1856 144 11 3 chr3 175958398 175958682 -51565896 + AluSx SINE Alu 1 286 -26 1729 122 110 23 chr3 175959007 175959352 -51565226 + THE1C LTR MaLR 1 375 0 40 21 0 0 chr3 175959352 175959399 -51565179 + AT_rich Low_complexity Low_complexity 1 47 0 483 156 13 0 chr3 175959444 175959521 -51565057 - Tigger5 DNA MER2_type 0 2323 2246 385 232 37 0 chr3 175959542 175959624 -51564954 - Tigger5 DNA MER2_type -2238 85 1 882 293 44 29 chr3 175959656 175960300 -51564278 - L1ME LINE L1 -4580 1681 993 2298 105 3 3 chr3 175960630 175960936 -51563642 + AluSx SINE Alu 1 306 -6 200 167 0 0 chr3 175961777 175961807 -51562771 + polypurine Low_complexity Low_complexity 1 30 0 2560 45 0 13 chr3 175962963 175963276 -51561302 - AluY SINE Alu -2 309 1 391 275 40 79 chr3 175963430 175963766 -51560812 + L1MEd LINE L1 97 429 -5776 1965 177 15 31 chr3 175963779 175964168 -51560410 + MLT1B LTR MaLR 3 385 -5 466 236 79 45 chr3 175964171 175964349 -51560229 + L1MEd LINE L1 428 611 -5594 349 336 50 7 chr3 175964381 175964521 -51560057 - L2 LINE L2 -241 3072 2927 366 301 91 23 chr3 175964855 175965074 -51559504 + L1MEd LINE L1 1225 1458 -4938 1792 94 4 0 chr3 175965335 175965568 -51559010 + AluY SINE Alu 78 311 0 183 129 0 0 chr3 175966796 175966827 -51557751 + (TCTA)n Simple_repeat Simple_repeat 1 31 0 1684 65 4 0 chr3 175967075 175967307 -51557271 + L1P4 LINE L1 5355 5587 -574 37 23 0 0 chr3 175968032 175968076 -51556502 + AT_rich Low_complexity Low_complexity 1 44 0 281 167 0 0 chr3 175968197 175968245 -51556333 - L1ME LINE L1 -5658 412 365 227 91 0 0 chr3 175968249 175968282 -51556296 + THE1C LTR MaLR 2 34 -394 547 163 0 0 chr3 175968452 175968550 -51556028 - L1PA14 LINE L1 -10 6151 6054 1649 147 52 38 chr3 175968550 175968896 -51555682 + THE1C LTR MaLR 25 375 0 429 251 11 84 chr3 175969094 175969285 -51555293 - L1ME LINE L1 -5888 182 6 316 259 12 0 chr3 175969816 175969897 -51554681 - LTR33 LTR ERVL -118 403 322 729 251 10 50 chr3 175969974 175970173 -51554405 - LTR33 LTR ERVL -319 202 12 3059 54 3 5 chr3 175970861 175971251 -51553327 + L1PA4 LINE L1 5767 6155 0 840 313 82 52 chr3 175971446 175972043 -51552535 + L1MEd LINE L1 623 1237 -4882 873 310 52 29 chr3 175972056 175972533 -51552045 + L1M2 LINE L1 13 500 -6349 420 403 117 8 chr3 175972592 175972840 -51551738 + L1M2 LINE L1 682 956 -5893 225 369 20 36 chr3 175973272 175973524 -51551054 + L1PA15-16 LINE L1 1279 1526 -5323 285 286 11 0 chr3 175973558 175973649 -51550929 + L1PA15-16 LINE L1 1472 1563 -5286 * 6856 218 64 27 chr3 175973638 175974208 -51550370 + L1PA15-16 LINE L1 1339 1886 -4963 2080 112 4 0 chr3 175974208 175974486 -51550092 - AluSg SINE Alu -31 279 1 6856 218 64 27 chr3 175974486 175976278 -51548300 + L1PA15-16 LINE L1 1886 3912 -2937 1996 142 0 22 chr3 175976278 175976595 -51547983 + AluSx SINE Alu 1 310 -2 6856 218 64 27 chr3 175976595 175977737 -51546841 + L1PA15-16 LINE L1 3912 5010 -1839 23 0 0 0 chr3 175977891 175977914 -51546664 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr3 175978041 175978072 -51546506 + AT_rich Low_complexity Low_complexity 1 31 0 297 279 0 9 chr3 175979192 175979303 -51545275 + (TA)n Simple_repeat Simple_repeat 2 111 0 284 197 0 14 chr3 175979351 175979422 -51545156 + (TA)n Simple_repeat Simple_repeat 2 71 0 2082 100 7 0 chr3 175979425 175979739 -51544839 - AluSx SINE Alu 0 316 1 1450 189 3 51 chr3 175979764 175979950 -51544628 - AluJo SINE Alu -15 297 130 2279 65 0 26 chr3 175979950 175980282 -51544296 + AluY SINE Alu 3 311 0 1450 189 3 51 chr3 175980282 175980407 -51544171 - AluJo SINE Alu -182 130 1 4085 194 65 10 chr3 175980415 175981628 -51542950 - L1MD1 LINE L1 -2 6240 4966 382 349 41 12 chr3 175981649 175981821 -51542757 - L3 LINE CR1 -1216 361 185 416 309 65 6 chr3 175982840 175983008 -51541570 - MIR SINE MIR -74 188 11 498 259 45 40 chr3 175983686 175983910 -51540668 + LTR41 LTR ERVL 34 258 -515 506 250 19 56 chr3 175984284 175984500 -51540078 + LTR41 LTR ERVL 463 670 -103 646 188 0 30 chr3 175984521 175984654 -51539924 - MLT1A2 LTR MaLR -242 132 4 28 29 0 0 chr3 175985148 175985183 -51539395 + AT_rich Low_complexity Low_complexity 1 35 0 270 0 0 0 chr3 175985267 175985297 -51539281 + (TG)n Simple_repeat Simple_repeat 2 31 0 254 352 40 8 chr3 175985396 175985521 -51539057 + MIR SINE MIR 59 187 -75 844 254 221 36 chr3 175985532 175986147 -51538431 + HAL1 LINE L1 1644 2372 -135 480 233 7 48 chr3 175986142 175986288 -51538290 - HAL1 LINE L1 -37 2470 2331 * 706 297 36 32 chr3 175986710 175986959 -51537619 - MIR SINE MIR -1 261 12 382 82 82 0 chr3 175989063 175989124 -51535454 + MADE1 DNA Mariner 1 66 -14 1404 268 15 69 chr3 175989129 175989737 -51534841 - MLT2F LTR ERVL -68 595 21 1695 261 115 20 chr3 175990005 175990937 -51533641 - L2 LINE L2 -1 3312 2295 297 135 0 0 chr3 175991997 175992049 -51532529 + (TC)n Simple_repeat Simple_repeat 2 53 0 309 51 0 0 chr3 175992049 175992088 -51532490 + (CA)n Simple_repeat Simple_repeat 1 39 0 2427 89 3 0 chr3 175992114 175992418 -51532160 - AluSx SINE Alu -7 305 1 247 160 149 11 chr3 175992975 175993069 -51531509 + L1MC5 LINE L1 7830 7936 -25 395 256 178 17 chr3 175993215 175993395 -51531183 - MIR SINE MIR -6 256 48 1907 122 62 0 chr3 175993417 175993705 -51530873 - AluSx SINE Alu -6 306 1 181 336 117 15 chr3 175993962 175994099 -51530479 + L2 LINE L2 2933 3083 -189 243 88 0 0 chr3 175994197 175994231 -51530347 + (TG)n Simple_repeat Simple_repeat 2 35 0 351 342 156 29 chr3 175994598 175995221 -51529357 + L2 LINE L2 1818 2519 -795 2558 87 32 0 chr3 175995297 175995667 -51528911 - L1PA10 LINE L1 -2 6166 5785 205 287 115 41 chr3 175995763 175995885 -51528693 + L2 LINE L2 2621 2751 -563 867 261 117 45 chr3 175996372 175996798 -51527780 - MLT1H LTR MaLR 0 549 93 505 256 62 8 chr3 175997791 175997920 -51526658 - L2 LINE L2 0 3313 3178 2142 147 126 5 chr3 175998087 175998469 -51526109 + MSTA LTR MaLR 1 428 0 7345 36 3 0 chr3 175998704 175999723 -51524855 + L1PA5 LINE L1 5136 6158 0 821 236 77 7 chr3 175999847 176000198 -51524380 + LTR52 LTR ERVL 11 420 -1 27 0 0 0 chr3 176001075 176001102 -51523476 + AT_rich Low_complexity Low_complexity 1 27 0 42337 37 1 2 chr3 176001325 176007477 -51517101 + L1PA3 LINE L1 8 6152 -3 210 320 31 31 chr3 176008241 176008338 -51516240 - L2 LINE L2 -3 3310 3214 1085 314 199 24 chr3 176008482 176008693 -51515885 + L2 LINE L2 1482 1655 -1658 423 38 0 0 chr3 176008693 176008746 -51515832 + (CA)n Simple_repeat Simple_repeat 2 54 0 1085 314 199 24 chr3 176008746 176009860 -51514718 + L2 LINE L2 1655 3030 -283 424 233 226 0 chr3 176009872 176010005 -51514573 + MIR SINE MIR 89 251 -11 237 315 65 28 chr3 176010178 176010286 -51514292 + L2 LINE L2 3184 3295 -18 1452 206 82 58 chr3 176010570 176011022 -51513556 + MLT1C LTR MaLR 5 467 0 327 25 0 0 chr3 176011919 176011959 -51512619 + (CA)n Simple_repeat Simple_repeat 2 41 0 22 35 0 0 chr3 176012561 176012590 -51511988 + AT_rich Low_complexity Low_complexity 1 29 0 26 82 0 0 chr3 176012665 176012726 -51511852 + AT_rich Low_complexity Low_complexity 1 61 0 372 275 156 12 chr3 176012798 176012958 -51511620 - MIR SINE MIR 0 262 80 268 192 115 51 chr3 176013083 176013161 -51511417 - MER63 DNA MER1_type 0 1061 979 432 180 66 57 chr3 176013164 176013286 -51511292 - MER63 DNA MER1_type -87 749 1 28 29 0 0 chr3 176014409 176014444 -51510134 + AT_rich Low_complexity Low_complexity 1 35 0 514 195 35 0 chr3 176014447 176014560 -51510018 - L1MA3 LINE L1 0 6305 6189 7650 259 66 32 chr3 176014617 176016374 -51508204 + L1ME2 LINE L1 81 1777 -4456 2250 95 17 0 chr3 176016374 176016668 -51507910 + AluSc SINE Alu 1 299 -10 7650 259 66 32 chr3 176016668 176018712 -51505866 + L1ME2 LINE L1 1777 3750 -2483 2204 90 0 10 chr3 176018712 176019000 -51505578 - AluSq SINE Alu -7 306 22 7650 259 66 32 chr3 176019000 176020646 -51503932 + L1ME2 LINE L1 3750 5339 -894 2478 139 54 27 chr3 176020646 176021091 -51503487 + MSTB2 LTR MaLR 1 457 0 7650 259 66 32 chr3 176021091 176021600 -51502978 + L1ME2 LINE L1 5339 6189 -44 2120 108 3 3 chr3 176021600 176021897 -51502681 + AluY SINE Alu 1 297 -14 7650 259 66 32 chr3 176021897 176021935 -51502643 + L1ME2 LINE L1 6189 6224 -9 214 170 94 19 chr3 176022172 176022225 -51502353 - L2 LINE L2 -2 3311 3255 192 225 25 0 chr3 176022234 176022274 -51502304 - L2 LINE L2 -16 3297 3257 318 343 86 34 chr3 176022300 176022475 -51502103 + MIR SINE MIR 8 191 -71 580 350 142 31 chr3 176022751 176023512 -51501066 - L2 LINE L2 -467 2847 2003 272 329 75 33 chr3 176023635 176023875 -51500703 - L2 LINE L2 -493 2821 2572 374 285 108 16 chr3 176024211 176024397 -51500181 + MER110 LTR ERV1 264 466 -25 2134 154 104 141 chr3 176024561 176025378 -51499200 + LTR48 LTR ERV1 1 787 0 3908 171 19 7 chr3 176026051 176026751 -51497827 + MER50 LTR ERV1 4 711 -23 272 198 0 94 chr3 176026781 176026877 -51497701 + L1ME4a LINE L1 5936 6022 -99 785 223 51 0 chr3 176027100 176027275 -51497303 - LTR48B LTR ERV1 0 644 461 2090 149 41 44 chr3 176027278 176027806 -51496772 - MLT2A2 LTR ERVL -4 550 20 16443 80 26 7 chr3 176027861 176030109 -51494469 + L1P LINE L1 2 2293 -3853 8150 194 33 48 chr3 176030114 176033496 -51491082 - HERVH LTR ERV1 -3622 2987 1 1251 173 76 104 chr3 176033496 176033959 -51490619 - LTR7 LTR ERV1 0 450 1 2815 6 0 13 chr3 176036352 176036665 -51487913 + AluYb8 SINE Alu 1 309 -9 469 225 36 65 chr3 176036786 176036884 -51487694 + MIR SINE MIR 61 155 -107 2491 122 78 0 chr3 176036884 176037279 -51487299 - MSTA LTR MaLR 0 428 3 469 225 36 65 chr3 176037279 176037318 -51487260 + MIR SINE MIR 155 194 -68 273 118 0 0 chr3 176037844 176037895 -51486683 + (CA)n Simple_repeat Simple_repeat 2 52 0 787 223 245 3 chr3 176038022 176038251 -51486327 + Charlie4a DNA MER1_type 33 205 -1756 2428 160 11 39 chr3 176038251 176038689 -51485889 + MSTB LTR MaLR 1 426 0 787 223 245 3 chr3 176038689 176038777 -51485801 + Charlie4a DNA MER1_type 205 427 -81 1133 251 108 75 chr3 176039936 176040443 -51484135 + MER77 LTR ERV1 54 577 -28 397 244 37 66 chr3 176040450 176040659 -51483919 + MER21B LTR ERV1 513 771 -6 295 291 128 20 chr3 176041227 176041375 -51483203 - MIR SINE MIR -70 192 29 1662 97 22 11 chr3 176041512 176041779 -51482799 - L1MA1 LINE L1 0 6302 6033 2343 95 0 3 chr3 176044502 176044808 -51479770 + AluSc SINE Alu 1 305 -4 663 217 62 12 chr3 176044846 176045007 -51479571 + MLT1A1 LTR MaLR 4 172 -193 1500 204 37 28 chr3 176045168 176045520 -51479058 + MLT1A1 LTR MaLR 11 365 0 616 255 67 90 chr3 176045520 176045947 -51478631 + MLT1L LTR MaLR 158 574 -41 5915 108 25 2 chr3 176046148 176047287 -51477291 - L1PA15 LINE L1 0 6165 5002 498 199 149 21 chr3 176047550 176047691 -51476887 + MER103 DNA DNA 7 165 -1 310 324 15 59 chr3 176049673 176049877 -51474701 - MIR3 SINE MIR -5 203 9 2389 63 0 10 chr3 176050872 176051172 -51473406 + AluY SINE Alu 1 297 -14 259 277 75 32 chr3 176051376 176051470 -51473108 + L3 LINE CR1 948 1045 -532 466 219 178 25 chr3 176051478 176051720 -51472858 + L1MC4 LINE L1 7090 7368 -674 211 170 0 43 chr3 176051852 176051899 -51472679 + GA-rich Low_complexity Low_complexity 4 48 0 273 109 0 0 chr3 176051899 176051945 -51472633 + (GGA)n Simple_repeat Simple_repeat 3 48 0 580 342 34 0 chr3 176053149 176053383 -51471195 - MIR SINE MIR -17 245 4 260 177 0 13 chr3 176054058 176054137 -51470441 + (TA)n Simple_repeat Simple_repeat 1 78 0 22 35 0 0 chr3 176054233 176054262 -51470316 + AT_rich Low_complexity Low_complexity 1 29 0 255 61 0 0 chr3 176054403 176054436 -51470142 + (CA)n Simple_repeat Simple_repeat 2 34 0 216 235 163 20 chr3 176054564 176054662 -51469916 - MIR SINE MIR -74 188 77 234 0 0 0 chr3 176054692 176054718 -51469860 + (CAA)n Simple_repeat Simple_repeat 2 27 0 797 222 97 39 chr3 176054752 176054959 -51469619 - MIR SINE MIR -29 233 15 237 338 0 0 chr3 176055961 176056032 -51468546 - MIR SINE MIR -118 144 74 427 158 10 0 chr3 176056051 176056152 -51468426 - Tigger3(Golem) DNA MER2_type -561 2468 2367 273 254 51 0 chr3 176056156 176056215 -51468363 - Tigger3(Golem) DNA MER2_type -2967 62 1 180 125 0 0 chr3 176056611 176056643 -51467935 + (A)n Simple_repeat Simple_repeat 1 32 0 592 201 7 65 chr3 176056848 176056987 -51467591 + FLAM_A SINE Alu 1 131 -2 487 279 18 35 chr3 176057184 176057368 -51467210 - MER5A DNA MER1_type -8 170 1 292 242 15 0 chr3 176057377 176057443 -51467135 + MER5B DNA MER1_type 9 75 -103 26 30 0 0 chr3 176057719 176057752 -51466826 + AT_rich Low_complexity Low_complexity 1 33 0 23 33 0 0 chr3 176058472 176058502 -51466076 + AT_rich Low_complexity Low_complexity 1 30 0 340 240 136 32 chr3 176058868 176058993 -51465585 + L2 LINE L2 3176 3313 0 222 37 0 0 chr3 176059053 176059080 -51465498 + (TA)n Simple_repeat Simple_repeat 1 27 0 744 269 94 7 chr3 176059175 176059484 -51465094 + HAL1 LINE L1 2077 2412 -95 198 150 0 0 chr3 176059485 176059525 -51465053 + (TTTG)n Simple_repeat Simple_repeat 1 40 0 754 226 29 137 chr3 176059562 176059891 -51464687 + MLT1B LTR MaLR 102 378 0 894 282 108 27 chr3 176060707 176061076 -51463502 + LTR16C LTR ERVL 39 437 -54 200 299 144 10 chr3 176061185 176061282 -51463296 + L2 LINE L2 2807 2916 -398 1761 194 102 6 chr3 176061378 176061739 -51462839 + MSTD LTR MaLR 1 396 0 1982 147 3 0 chr3 176062148 176062448 -51462130 + AluSx SINE Alu 1 301 -11 222 118 0 0 chr3 176062448 176062482 -51462096 + (GGAA)n Simple_repeat Simple_repeat 1 34 0 1220 179 67 91 chr3 176062652 176063026 -51461552 + MLT1A1 LTR MaLR 1 365 0 2106 135 34 0 chr3 176063046 176063401 -51461177 - L1MA9 LINE L1 -4 6308 5942 2426 87 0 0 chr3 176063660 176063970 -51460608 - AluY SINE Alu -1 310 1 380 370 54 14 chr3 176064004 176064372 -51460206 - L1MC/D LINE L1 -1989 5819 5437 27 0 0 0 chr3 176064483 176064510 -51460068 + AT_rich Low_complexity Low_complexity 1 27 0 270 0 0 0 chr3 176064633 176064663 -51459915 + (CA)n Simple_repeat Simple_repeat 2 31 0 1442 176 13 59 chr3 176064685 176064991 -51459587 - AluJo SINE Alu -10 292 1 660 134 0 0 chr3 176065998 176066117 -51458461 + L1MA9 LINE L1 6194 6312 0 21 0 0 0 chr3 176066561 176066582 -51457996 + AT_rich Low_complexity Low_complexity 1 21 0 1269 177 28 25 chr3 176066816 176067099 -51457479 + L1MA7 LINE L1 6003 6286 -5 346 312 11 0 chr3 176068424 176068517 -51456061 + Charlie1 DNA MER1_type 1 94 -2667 683 204 21 52 chr3 176068651 176068842 -51455736 + Charlie1 DNA MER1_type 1493 1677 -1084 17266 170 46 6 chr3 176068855 176072411 -51452167 + L1MA2 LINE L1 14 3289 -4276 9507 77 5 3 chr3 176072418 176072658 -51451920 - L1PA7 LINE L1 -13 6141 5903 2429 93 0 0 chr3 176072658 176072968 -51451610 - AluY SINE Alu -1 310 1 9507 77 5 3 chr3 176072968 176074800 -51449778 - L1PA7 LINE L1 -251 5903 4068 264 26 0 0 chr3 176074818 176074857 -51449721 - AluY SINE Alu 0 302 264 14787 175 31 11 chr3 176074859 176077960 -51446618 + L1MA2 LINE L1 3576 6789 -934 2163 119 3 0 chr3 176077960 176078253 -51446325 - AluSq SINE Alu -19 294 1 14787 175 31 11 chr3 176078253 176079083 -51445495 + L1MA2 LINE L1 6789 7601 -122 6477 48 146 67 chr3 176079083 176080162 -51444416 - MER11A LTR ERVK 0 1266 6 798 158 0 0 chr3 176080162 176080295 -51444283 + L1MA2 LINE L1 7591 7723 0 24 32 0 0 chr3 176080295 176080326 -51444252 + AT_rich Low_complexity Low_complexity 1 31 0 3687 204 42 45 chr3 176080332 176080778 -51443800 + Charlie1 DNA MER1_type 1665 2111 -650 5422 108 17 0 chr3 176080778 176081783 -51442795 - L1PA13 LINE L1 0 6163 5111 3687 204 42 45 chr3 176081783 176082436 -51442142 + Charlie1 DNA MER1_type 2111 2760 -1 446 328 91 12 chr3 176082476 176082717 -51441861 - MLT1J LTR MaLR -244 267 8 3393 136 10 43 chr3 176082738 176083336 -51441242 + L1MA9 LINE L1 5399 5976 -336 3021 233 45 50 chr3 176083346 176084997 -51439581 + L1ME1 LINE L1 4341 6000 -334 182 37 37 0 chr3 176084997 176085024 -51439554 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 631 183 36 0 chr3 176085024 176085161 -51439417 + L1MA9 LINE L1 6166 6307 -5 3021 233 45 50 chr3 176085161 176085351 -51439227 + L1ME1 LINE L1 5998 6313 -21 479 191 0 0 chr3 176085797 176085881 -51438697 - Tigger7 DNA MER2_type -4 2483 2400 2572 153 120 9 chr3 176085884 176086335 -51438243 - Tigger7 DNA MER2_type -1890 597 97 22 0 0 0 chr3 176086399 176086421 -51438157 + AT_rich Low_complexity Low_complexity 1 22 0 474 215 0 0 chr3 176086895 176086974 -51437604 + Tigger7 DNA MER2_type 1 79 -626 3258 182 130 62 chr3 176086974 176087959 -51436619 - L1MC3 LINE L1 -14 7771 6720 23 0 0 0 chr3 176088474 176088497 -51436081 + AT_rich Low_complexity Low_complexity 1 23 0 2437 154 42 0 chr3 176089350 176089759 -51434819 + MSTC LTR MaLR 2 427 -1 431 359 18 12 chr3 176090691 176090861 -51433717 - MIR3 SINE MIR -21 187 17 213 336 95 35 chr3 176091236 176091352 -51433226 - L3b LINE CR1 -11 1572 1450 471 275 180 0 chr3 176091404 176091593 -51432985 + MIR SINE MIR 34 256 -6 3193 141 32 55 chr3 176092201 176092852 -51431726 + L1MB7 LINE L1 5529 6164 -20 360 0 0 0 chr3 176093803 176093843 -51430735 + (TG)n Simple_repeat Simple_repeat 2 41 0 655 315 32 19 chr3 176094070 176094286 -51430292 - MIR SINE MIR -39 223 5 251 190 0 51 chr3 176094495 176094538 -51430040 + (TATATG)n Simple_repeat Simple_repeat 4 43 -35 198 0 0 0 chr3 176094538 176094560 -51430018 + (GA)n Simple_repeat Simple_repeat 2 23 0 251 190 0 51 chr3 176094560 176094595 -51429983 + (TATATG)n Simple_repeat Simple_repeat 43 78 0 387 0 0 0 chr3 176094595 176094638 -51429940 + (TAGA)n Simple_repeat Simple_repeat 4 46 0 1443 239 30 15 chr3 176094773 176095167 -51429411 + MER93a LTR ERV1 3 402 0 295 242 192 0 chr3 176095648 176095768 -51428810 + MIR SINE MIR 4 146 -116 705 253 144 5 chr3 176096073 176096267 -51428311 + MIR SINE MIR 11 231 -31 25 0 0 0 chr3 176097980 176098005 -51426573 + AT_rich Low_complexity Low_complexity 1 25 0 1719 164 3 58 chr3 176098089 176098399 -51426179 - AluJo SINE Alu -17 295 3 23 0 0 0 chr3 176098412 176098435 -51426143 + AT_rich Low_complexity Low_complexity 1 23 0 919 200 12 0 chr3 176099014 176099179 -51425399 + MSTD LTR MaLR 230 396 0 557 239 116 0 chr3 176099519 176099674 -51424904 + MIR SINE MIR 90 262 0 29 60 0 0 chr3 176101726 176101776 -51422802 + AT_rich Low_complexity Low_complexity 1 50 0 337 206 15 0 chr3 176101977 176102045 -51422533 + MER89 LTR ERV1 1 69 -490 2328 140 18 13 chr3 176102048 176102433 -51422145 + MER89 LTR ERV1 173 559 0 23 78 0 0 chr3 176103347 176103398 -51421180 + AT_rich Low_complexity Low_complexity 1 51 0 22 80 0 0 chr3 176103822 176103872 -51420706 + AT_rich Low_complexity Low_complexity 1 50 0 789 274 96 18 chr3 176104003 176104284 -51420294 + HAL1 LINE L1 1665 1967 -540 688 269 67 19 chr3 176104427 176104903 -51419675 + HAL1 LINE L1 1983 2507 0 1201 229 8 4 chr3 176105154 176105390 -51419188 - MER8 DNA MER2_type 0 239 3 186 167 0 0 chr3 176105505 176105541 -51419037 + A-rich Low_complexity Low_complexity 4 39 0 25 31 0 0 chr3 176105610 176105642 -51418936 + AT_rich Low_complexity Low_complexity 1 32 0 263 235 0 74 chr3 176107206 176107272 -51417306 - L2 LINE L2 -5 3308 3247 2451 56 3 0 chr3 176107272 176107578 -51417000 - AluY SINE Alu -4 307 1 263 235 0 74 chr3 176107578 176107592 -51416986 - L2 LINE L2 -66 3247 3234 815 311 94 50 chr3 176108425 176108663 -51415915 - L2 LINE L2 -346 2968 2742 3295 38 0 0 chr3 176108663 176109060 -51415518 - L1PA5 LINE L1 -2 6152 5756 815 311 94 50 chr3 176109060 176109447 -51415131 - L2 LINE L2 -572 2742 2315 1303 312 48 45 chr3 176109451 176109778 -51414800 + ERVL LTR ERVL 384 709 -4287 1189 268 17 42 chr3 176109778 176110185 -51414393 - MLT2C1 LTR ERVL 0 397 1 1303 312 48 45 chr3 176110185 176110524 -51414054 + ERVL LTR ERVL 709 1052 -3944 731 351 4 0 chr3 176110520 176110785 -51413793 + ERVL LTR ERVL 1098 1363 -3633 * 832 342 47 10 chr3 176110856 176111326 -51413252 + ERVL LTR ERVL 1473 2023 -2973 416 252 76 0 chr3 176111617 176111748 -51412830 + LTR50 LTR ERVL 27 167 -628 2103 112 30 3 chr3 176111805 176112101 -51412477 - AluSx SINE Alu -8 304 1 1557 346 68 14 chr3 176112229 176113011 -51411567 + ERVL LTR ERVL 4150 4973 -791 658 287 119 51 chr3 176113459 176113853 -51410725 + LTR16A LTR ERVL 25 445 -5 249 193 0 35 chr3 176113997 176114054 -51410524 + MIR SINE MIR 115 169 -93 478 299 25 25 chr3 176114110 176114267 -51410311 - MIR SINE MIR -104 158 2 658 240 70 20 chr3 176114295 176114495 -51410083 - MER63A DNA MER1_type 0 210 1 212 313 114 40 chr3 176114495 176114691 -51409887 - L2 LINE L2 -1770 1544 1334 237 214 86 43 chr3 176116362 176116432 -51408146 - L2 LINE L2 0 3272 3200 668 254 98 8 chr3 176117479 176117715 -51406863 + MIR SINE MIR 6 262 0 4175 233 83 24 chr3 176117742 176119350 -51405228 + L1PA11 LINE L1 1 2941 -4633 961 234 89 23 chr3 176119348 176119605 -51404973 - L1PA12 LINE L1 -6762 819 546 * 21386 133 20 34 chr3 176119601 176123589 -51400989 + L1PA11 LINE L1 2954 6900 -712 236 65 0 0 chr3 176123589 176123620 -51400958 + HSMAR1 DNA Mariner 1257 1287 0 21386 133 20 34 chr3 176123620 176124323 -51400255 + L1PA11 LINE L1 6900 7611 -1 1672 166 7 30 chr3 176124898 176125199 -51399379 + MSTB1 LTR MaLR 2 295 -137 2079 76 11 0 chr3 176125598 176125860 -51398718 - AluY SINE Alu -8 303 39 365 345 173 20 chr3 176127413 176127662 -51396916 + L2 LINE L2 2986 3272 0 12955 140 64 30 chr3 176128944 176129467 -51395111 - Tigger1 DNA MER2_type -1 2417 1914 2447 79 0 0 chr3 176129467 176129770 -51394808 + AluY SINE Alu 1 303 -8 12955 140 64 30 chr3 176129770 176129844 -51394734 - Tigger1 DNA MER2_type -504 1914 1844 1703 155 3 37 chr3 176129844 176130141 -51394437 + AluJb SINE Alu 23 309 -3 12955 140 64 30 chr3 176130141 176131878 -51392700 - Tigger1 DNA MER2_type -574 1844 1 390 314 59 24 chr3 176132099 176132268 -51392310 + MIR3 SINE MIR 33 207 -1 * 627 299 64 0 chr3 176132261 176132495 -51392083 - MIR SINE MIR 0 262 14 219 69 0 0 chr3 176132754 176132783 -51391795 + (CA)n Simple_repeat Simple_repeat 1 29 0 964 200 5 11 chr3 176133435 176133620 -51390958 + AluJo SINE Alu 109 292 -20 21 112 0 0 chr3 176133681 176133779 -51390799 + AT_rich Low_complexity Low_complexity 1 98 0 244 173 0 0 chr3 176133874 176133926 -51390652 + L1ME LINE L1 90 141 -5978 321 366 49 29 chr3 176134326 176134531 -51390047 + L1ME LINE L1 617 825 -5294 1927 154 29 35 chr3 176134531 176134908 -51389670 + THE1C LTR MaLR 1 375 0 374 275 64 0 chr3 176134979 176135182 -51389396 + L1ME LINE L1 885 1111 -5008 1186 182 27 12 chr3 176135253 176135511 -51389067 + L1MA5 LINE L1 6039 6300 0 297 288 47 12 chr3 176135516 176135686 -51388892 + L1ME LINE L1 1196 1371 -4939 1675 233 86 11 chr3 176135711 176136216 -51388362 + MLT1E LTR MaLR 68 593 0 542 284 71 4 chr3 176136274 176136542 -51388036 + L1ME LINE L1 1449 1734 -4576 36 53 0 0 chr3 176137095 176137152 -51387426 + AT_rich Low_complexity Low_complexity 1 57 0 28 0 0 0 chr3 176137742 176137770 -51386808 + AT_rich Low_complexity Low_complexity 1 28 0 907 249 0 0 chr3 176137982 176138163 -51386415 + MIR SINE MIR 6 186 -76 8891 34 0 4 chr3 176138176 176139279 -51385299 + L1P LINE L1 2006 3104 -3042 420 306 56 32 chr3 176139280 176139496 -51385082 - L1 LINE L1 -1796 4350 4130 526 264 104 0 chr3 176139582 176139745 -51384833 - MIR SINE MIR -1 261 82 296 367 51 0 chr3 176139886 176140082 -51384496 - L2 LINE L2 -911 2403 2198 302 315 48 27 chr3 176140974 176141120 -51383458 - MLT1L LTR MaLR -105 510 362 471 250 43 65 chr3 176142733 176142965 -51381613 - LTR16A LTR ERVL -195 255 29 370 275 29 32 chr3 176142995 176143242 -51381336 + L1MC4 LINE L1 7001 7244 -728 469 269 35 96 chr3 176143575 176144033 -51380545 + L1MC5 LINE L1 7512 7941 -20 662 301 95 56 chr3 176145090 176145555 -51379023 - LTR67 LTR ERVL 0 557 75 23 33 0 0 chr3 176145898 176145928 -51378650 + AT_rich Low_complexity Low_complexity 1 30 0 282 240 8 16 chr3 176146277 176146398 -51378180 + (TA)n Simple_repeat Simple_repeat 1 120 0 759 207 39 39 chr3 176146565 176146768 -51377810 - MER3 DNA MER1_type -4 205 3 300 329 49 60 chr3 176147053 176147187 -51377391 - MIR SINE MIR 0 262 133 1364 175 119 4 chr3 176147187 176147343 -51377235 - AluJb SINE Alu -13 299 162 423 0 0 0 chr3 176147343 176147390 -51377188 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 1364 175 119 4 chr3 176147390 176147501 -51377077 - AluJb SINE Alu -150 162 1 300 329 49 60 chr3 176147501 176147629 -51376949 - MIR SINE MIR -129 133 5 207 69 0 0 chr3 176148750 176148779 -51375799 + (GA)n Simple_repeat Simple_repeat 2 30 0 202 356 173 0 chr3 176149636 176149740 -51374838 + L2 LINE L2 3141 3262 -10 367 331 15 0 chr3 176150265 176150398 -51374180 + MIR3 SINE MIR 74 208 0 346 257 117 109 chr3 176150455 176150712 -51373866 - MIR SINE MIR 0 262 4 799 248 66 107 chr3 176151343 176151455 -51373123 + MER110 LTR ERV1 38 153 -324 216 0 0 0 chr3 176151455 176151479 -51373099 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 799 248 66 107 chr3 176151479 176151842 -51372736 + MER110 LTR ERV1 153 477 0 827 241 0 6 chr3 176152027 176152197 -51372381 - AluJb SINE Alu -11 301 133 1649 160 65 11 chr3 176152206 176152481 -51372097 - AluSx SINE Alu -22 290 1 3076 25 0 0 chr3 176152507 176152865 -51371713 - L1PA4 LINE L1 -1715 4431 4074 7801 35 1 2 chr3 176152865 176154579 -51369999 + L1PA4 LINE L1 4440 6152 -3 475 284 23 51 chr3 176155289 176155465 -51369113 - L2 LINE L2 -1 3312 3142 270 243 14 14 chr3 176155703 176155773 -51368805 + ORSL DNA AcHobo 197 266 -9 625 251 57 6 chr3 176156334 176156509 -51368069 + MIR SINE MIR 77 260 -2 302 44 0 0 chr3 176157217 176157262 -51367316 + L1PA2 LINE L1 6111 6155 0 686 210 8 0 chr3 176157280 176157399 -51367179 - FLAM_C SINE Alu -23 120 1 543 332 91 57 chr3 176157987 176158595 -51365983 - L2 LINE L2 0 3272 2556 1001 309 68 23 chr3 176158692 176159283 -51365295 + L2 LINE L2 2690 3313 0 245 320 19 19 chr3 176159271 176159374 -51365204 - L2 LINE L2 -840 2474 2372 * 2184 132 8 27 chr3 176159441 176159811 -51364767 - THE1B LTR MaLR -1 363 1 749 119 0 0 chr3 176159811 176159920 -51364658 - THE1B-int LTR MaLR 0 1580 1472 1851 240 106 47 chr3 176159925 176160755 -51363823 + HAL1 LINE L1 1296 2174 -333 612 283 124 46 chr3 176160870 176161280 -51363298 - HAL1 LINE L1 -1194 1313 872 902 210 17 0 chr3 176161285 176161466 -51363112 - MER5A DNA MER1_type 0 189 6 406 174 11 65 chr3 176164651 176164743 -51359835 + MIR SINE MIR 78 164 -98 1045 211 9 28 chr3 176165260 176165478 -51359100 + MER20 DNA MER1_type 6 219 0 22 0 0 0 chr3 176166253 176166275 -51358303 + AT_rich Low_complexity Low_complexity 1 22 0 408 286 148 63 chr3 176166572 176166959 -51357619 + MER115 DNA AcHobo 2 441 -252 1629 198 14 0 chr3 176167052 176167345 -51357233 + AluJb SINE Alu 1 297 -15 230 265 122 11 chr3 176167442 176167623 -51356955 - L1ME LINE L1 -678 5492 5292 27 29 0 0 chr3 176168006 176168040 -51356538 + AT_rich Low_complexity Low_complexity 1 34 0 461 129 35 0 chr3 176168040 176168125 -51356453 + MER115 DNA AcHobo 543 630 -63 22 0 0 0 chr3 176169098 176169120 -51355458 + AT_rich Low_complexity Low_complexity 1 22 0 2449 181 153 22 chr3 176169125 176169711 -51354867 - MER39 LTR ERV1 0 707 1 2097 136 0 0 chr3 176170063 176170364 -51354214 + AluSq SINE Alu 1 301 -12 245 271 17 0 chr3 176170391 176170450 -51354128 - MIR3 SINE MIR -26 182 123 237 360 36 7 chr3 176170548 176170687 -51353891 + L1P LINE L1 4018 4160 -1986 330 288 146 26 chr3 176170731 176170964 -51353614 + L1ME3 LINE L1 5127 5387 -759 8816 161 42 4 chr3 176171078 176174905 -51349673 + L1PBa LINE L1 6 4210 -2652 * 41773 61 2 0 chr3 176174904 176181027 -51343551 - L1PA5 LINE L1 -4 6150 14 8561 203 4 6 chr3 176181054 176182922 -51341656 + L1 LINE L1 4226 6089 -773 2294 123 6 11 chr3 176182924 176183281 -51341297 + THE1A LTR MaLR 1 355 0 3834 99 14 7 chr3 176183281 176183837 -51340741 + THE1A-int LTR MaLR 1 560 -1020 767 174 118 36 chr3 176183967 176184162 -51340416 + MSTB1 LTR MaLR 221 431 -1 910 158 0 12 chr3 176184498 176184669 -51339909 + L1MA4A LINE L1 6129 6297 -6 315 0 0 0 chr3 176185556 176185591 -51338987 + (CA)n Simple_repeat Simple_repeat 2 36 0 536 276 113 50 chr3 176186485 176186848 -51337730 + HAL1 LINE L1 52 437 -2070 253 340 85 26 chr3 176186914 176187067 -51337511 + LTR67 LTR ERVL 352 513 -44 351 245 19 38 chr3 176187076 176187182 -51337396 + L1ME3 LINE L1 5601 5704 -458 234 125 0 0 chr3 176187182 176187214 -51337364 + AluY SINE Alu 1 32 -271 879 57 90 0 chr3 176187216 176187338 -51337240 - LTR12 LTR ERV1 0 714 582 5753 95 44 0 chr3 176187338 176188129 -51336449 - LTR12 LTR ERV1 0 826 1 2276 71 4 0 chr3 176188129 176188409 -51336169 + AluY SINE Alu 31 311 0 929 235 88 41 chr3 176188414 176188801 -51335777 + L1ME3 LINE L1 5691 6095 -67 266 247 0 11 chr3 176188839 176188928 -51335650 + GA-rich Low_complexity Low_complexity 3 90 0 344 289 52 21 chr3 176191908 176192005 -51332573 + L2 LINE L2 3163 3262 -10 1738 140 61 14 chr3 176192681 176192960 -51331618 + AluSg SINE Alu 1 292 -18 1879 128 24 10 chr3 176193378 176193675 -51330903 - AluSx SINE Alu -11 301 1 300 70 0 0 chr3 176194448 176194491 -51330087 + (TG)n Simple_repeat Simple_repeat 2 44 0 1775 207 85 83 chr3 176194642 176195256 -51329322 + MLT1E2 LTR MaLR 3 617 -9 936 243 84 87 chr3 176195612 176196504 -51328074 + L1MC5 LINE L1 6894 7782 -179 219 114 0 0 chr3 176196511 176196546 -51328032 + (TA)n Simple_repeat Simple_repeat 1 35 0 261 0 0 0 chr3 176196670 176196699 -51327879 + (CA)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr3 176196805 176196828 -51327750 + AT_rich Low_complexity Low_complexity 1 23 0 303 318 155 8 chr3 176196862 176197120 -51327458 + HAL1 LINE L1 1351 1646 -861 2386 242 22 12 chr3 176197365 176197959 -51326619 + L1ME3A LINE L1 5467 6066 -104 387 321 12 12 chr3 176198086 176198251 -51326327 + L1MDa LINE L1 2417 2581 -3959 1627 177 3 30 chr3 176198576 176198875 -51325703 - AluJo SINE Alu -21 291 1 364 82 33 0 chr3 176199965 176200026 -51324552 + (GA)n Simple_repeat Simple_repeat 2 64 0 823 218 98 16 chr3 176200042 176200235 -51324343 + MER63A DNA MER1_type 2 210 0 226 220 34 0 chr3 176201041 176201100 -51323478 + (TA)n Simple_repeat Simple_repeat 2 62 0 249 33 0 0 chr3 176201116 176201146 -51323432 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 5018 44 13 0 chr3 176201146 176201756 -51322822 - L1PA7 LINE L1 -18 6136 5519 1265 153 8 29 chr3 176202245 176202486 -51322092 - MER46A DNA MER2_type 0 236 1 268 228 39 6 chr3 176203104 176203241 -51321337 + Charlie2 DNA MER1_type 6 222 -2640 344 219 47 39 chr3 176203369 176203492 -51321086 + Charlie2 DNA MER1_type 1879 2002 -860 257 140 0 70 chr3 176203492 176203549 -51321029 - MLT2C2 LTR ERVL -2 513 461 457 210 14 14 chr3 176203549 176203692 -51320886 + (CAGAGA)n Simple_repeat Simple_repeat 5 147 0 2456 173 20 11 chr3 176203692 176204132 -51320446 - MLT2C2 LTR ERVL -20 444 1 1724 201 103 96 chr3 176204138 176204989 -51319589 + Charlie2 DNA MER1_type 2006 2862 0 213 182 200 0 chr3 176205105 176205160 -51319418 - MIR3 SINE MIR -34 174 109 210 71 0 0 chr3 176205671 176205699 -51318879 + (T)n Simple_repeat Simple_repeat 1 28 0 189 74 0 0 chr3 176206251 176206278 -51318300 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 383 109 0 0 chr3 176206589 176206644 -51317934 - L1PA5 LINE L1 -1 6153 6099 482 271 97 7 chr3 176209199 176209343 -51315235 - MIR3 SINE MIR -7 201 45 485 300 56 0 chr3 176209378 176209538 -51315040 + MER5B DNA MER1_type 9 177 -1 272 250 0 15 chr3 176209640 176209708 -51314870 - MER94 DNA DNA -46 88 22 320 177 0 0 chr3 176210372 176210434 -51314144 + L1MA6 LINE L1 6239 6300 0 2027 58 0 39 chr3 176210455 176210713 -51313865 + AluY SINE Alu 44 291 -20 293 327 41 68 chr3 176210726 176210992 -51313586 - MLT1K LTR MaLR -164 424 166 339 298 7 64 chr3 176212130 176212271 -51312307 + MER5A DNA MER1_type 57 189 0 21 57 0 0 chr3 176212321 176212356 -51312222 + AT_rich Low_complexity Low_complexity 1 35 0 1386 285 33 50 chr3 176212525 176212757 -51311821 - L2 LINE L2 -2 3311 3077 811 231 158 82 chr3 176212757 176213125 -51311453 + MSTD LTR MaLR 1 396 0 1386 285 33 50 chr3 176213125 176213487 -51311091 - L2 LINE L2 -236 3077 2731 491 344 20 16 chr3 176213994 176214299 -51310279 + L1MEd LINE L1 522 827 -5292 475 91 0 26 chr3 176214400 176214477 -51310101 + L1MA5A LINE L1 6144 6218 -79 404 116 12 23 chr3 176214592 176214678 -51309900 + L1MA5A LINE L1 6211 6295 -2 548 191 0 55 chr3 176214690 176214800 -51309778 - AluSg SINE Alu -192 118 15 473 294 117 33 chr3 176214842 176215413 -51309165 + L1MEd LINE L1 942 1589 -4721 246 273 50 33 chr3 176215430 176215551 -51309027 + L1ME LINE L1 571 693 -5941 2302 106 0 7 chr3 176216057 176216360 -51308218 + AluSx SINE Alu 1 301 -11 295 150 50 30 chr3 176216476 176216576 -51308002 + (TATAA)n Simple_repeat Simple_repeat 2 103 0 301 299 125 33 chr3 176216578 176216762 -51307816 + L1ME LINE L1 1272 1472 -5070 1255 185 11 26 chr3 176216820 176217085 -51307493 + L1PA15 LINE L1 5905 6165 0 3058 194 33 3 chr3 176217085 176217744 -51306834 + L1MB2 LINE L1 5473 6167 -4 1023 239 111 3 chr3 176217900 176218356 -51306222 + L1ME3A LINE L1 5314 5834 -332 1602 190 7 20 chr3 176218610 176218915 -51305663 - AluJo SINE Alu -10 302 2 523 352 36 8 chr3 176218915 176219307 -51305271 - L1MEc LINE L1 -2449 3766 3364 1456 227 93 25 chr3 176219936 176220367 -51304211 - MLT1C LTR MaLR 0 467 8 454 189 38 76 chr3 176220371 176220503 -51304075 - L1MB8 LINE L1 -29 6149 6023 486 322 99 14 chr3 176220507 176220929 -51303649 - L1MEc LINE L1 -4671 1725 1268 245 245 0 0 chr3 176222809 176222858 -51301720 + (CA)n Simple_repeat Simple_repeat 2 50 0 1959 148 7 0 chr3 176223262 176223566 -51301012 + AluSx SINE Alu 1 306 -6 25 31 0 0 chr3 176223794 176223826 -51300752 + AT_rich Low_complexity Low_complexity 1 32 0 1179 258 89 40 chr3 176225000 176225449 -51299129 + MLT1H1 LTR MaLR 1 471 -84 223 183 0 50 chr3 176225450 176225510 -51299068 + (TATATG)n Simple_repeat Simple_repeat 5 61 0 227 175 35 18 chr3 176225510 176225567 -51299011 + MLT1H1 LTR MaLR 475 532 -10 348 333 11 0 chr3 176225708 176225798 -51298780 + MIR SINE MIR 2 92 -170 1302 139 0 13 chr3 176225891 176226121 -51298457 + L1MA1 LINE L1 6076 6302 0 1867 108 11 11 chr3 176226366 176226652 -51297926 - L1PA10 LINE L1 -167 6001 5716 205 329 71 12 chr3 176226800 176226885 -51297693 + L2 LINE L2 2953 3042 -230 310 233 184 0 chr3 176226960 176227063 -51297515 + HsTC2 DNA Tc2 5 126 -1772 226 239 0 0 chr3 176227058 176227104 -51297474 + HsTC2 DNA Tc2 1230 1275 -623 * 201 455 27 0 chr3 176227142 176227252 -51297326 + L2 LINE L2 3110 3222 -50 274 277 12 0 chr3 176227472 176227555 -51297023 + L1ME LINE L1 5510 5593 -528 928 278 42 16 chr3 176227783 176228161 -51296417 + L1MC4 LINE L1 7089 7476 -566 317 280 27 0 chr3 176229340 176229415 -51295163 + L1MEd LINE L1 940 1016 -5103 355 190 0 0 chr3 176229456 176229514 -51295064 - Tigger5 DNA MER2_type 0 2323 2266 2342 134 75 10 chr3 176229637 176230039 -51294539 - MSTA LTR MaLR 0 428 1 810 234 266 8 chr3 176230039 176230283 -51294295 - Tigger5 DNA MER2_type -2016 307 1 250 281 0 0 chr3 176230329 176230411 -51294167 + L1MEd LINE L1 1173 1254 -5056 24 0 0 0 chr3 176230528 176230552 -51294026 + AT_rich Low_complexity Low_complexity 1 24 0 361 279 49 16 chr3 176230565 176230748 -51293830 - L1MEc LINE L1 -4579 1817 1629 1170 293 68 35 chr3 176230757 176231042 -51293536 + L1MEd LINE L1 1258 1532 -4597 983 195 12 0 chr3 176231042 176231211 -51293367 + FAM SINE Alu 1 171 -4 1170 293 68 35 chr3 176231211 176232087 -51292491 + L1MEd LINE L1 1532 2471 -3658 739 155 0 0 chr3 176232517 176232674 -51291904 - FLAM_C SINE Alu 0 157 1 841 207 16 54 chr3 176234533 176234619 -51289959 - MER20B DNA MER1_type -36 747 659 1828 153 46 56 chr3 176234619 176235011 -51289567 - MLT1B LTR MaLR 0 390 3 841 207 16 54 chr3 176235011 176235166 -51289412 - MER20B DNA MER1_type -124 659 515 25 65 0 0 chr3 176235940 176235986 -51288592 + AT_rich Low_complexity Low_complexity 1 46 0 1515 262 57 8 chr3 176235995 176236472 -51288106 - MER20B DNA MER1_type -283 500 1 7182 39 0 0 chr3 176236504 176237400 -51287178 - L1P LINE L1 -2238 3908 3013 9853 18 0 0 chr3 176237401 176238546 -51286032 + L1P LINE L1 3911 5055 -1091 8759 39 4 0 chr3 176238696 176240391 -51284187 - L1PA4 LINE L1 -139 6016 4318 * 17078 43 7 1 chr3 176240390 176242557 -51282021 + L1PA3 LINE L1 1991 4171 -1975 7359 38 0 1 chr3 176242696 176243588 -51280990 + L1PA3 LINE L1 5265 6155 0 1763 176 7 0 chr3 176244430 176244726 -51279852 + AluSx SINE Alu 7 304 -8 27 62 0 0 chr3 176245031 176245079 -51279499 + AT_rich Low_complexity Low_complexity 1 48 0 292 273 20 27 chr3 176245086 176245236 -51279342 + L1MEd LINE L1 991 1139 -4980 1338 107 39 5 chr3 176245826 176246031 -51278547 + AluSq SINE Alu 96 307 -6 1672 188 176 21 chr3 176246479 176246990 -51277588 + LTR49 LTR ERV1 1 590 -5 5631 118 11 2 chr3 176247329 176248124 -51276454 + THE1A-int LTR MaLR 773 1574 -6 2281 121 11 11 chr3 176248129 176248484 -51276094 + THE1A LTR MaLR 1 355 0 2932 95 5 5 chr3 176248484 176248905 -51275673 + L1PB1 LINE L1 5371 5791 -360 2401 118 5 16 chr3 176248965 176249338 -51275240 + L1PB1 LINE L1 5781 6149 -2 205 182 0 0 chr3 176249338 176249382 -51275196 + (TTAAA)n Simple_repeat Simple_repeat 1 44 0 211 125 25 0 chr3 176249535 176249575 -51275003 + (TTTG)n Simple_repeat Simple_repeat 2 42 0 564 186 35 0 chr3 176250304 176250417 -51274161 + LTR49 LTR ERV1 474 590 -5 252 0 0 0 chr3 176250719 176250747 -51273831 + (A)n Simple_repeat Simple_repeat 1 28 0 25 51 0 0 chr3 176250970 176251009 -51273569 + AT_rich Low_complexity Low_complexity 1 39 0 406 259 94 43 chr3 176251091 176251346 -51273232 + L1ME3A LINE L1 1063 1330 -5066 271 191 44 0 chr3 176251552 176251620 -51272958 + L1ME3A LINE L1 2058 2128 -4268 1552 173 124 49 chr3 176251752 176252220 -51272358 - MLT1D LTR MaLR -2 503 1 23 0 0 0 chr3 176252552 176252575 -51272003 + AT_rich Low_complexity Low_complexity 1 23 0 359 191 19 29 chr3 176252952 176253057 -51271521 + L1ME3A LINE L1 3733 3836 -2379 23 0 0 0 chr3 176253062 176253085 -51271493 + AT_rich Low_complexity Low_complexity 1 23 0 801 147 0 15 chr3 176253091 176253227 -51271351 - U8 snRNA snRNA -2 134 1 309 319 60 9 chr3 176253240 176253356 -51271222 + L1ME3A LINE L1 3842 3963 -2252 624 283 121 53 chr3 176253500 176253953 -51270625 - LTR33A LTR ERVL 0 523 40 1336 111 103 0 chr3 176254288 176254541 -51270037 + L1MA2 LINE L1 6026 6304 0 344 358 7 17 chr3 176254693 176254868 -51269710 + G-rich Low_complexity Low_complexity 3 296 0 484 302 137 29 chr3 176254989 176255942 -51268636 + L1ME3A LINE L1 4621 5686 -553 353 273 55 22 chr3 176256005 176256188 -51268390 + L1ME3A LINE L1 5829 6017 -222 24 67 0 0 chr3 176256452 176256497 -51268081 + AT_rich Low_complexity Low_complexity 1 45 0 261 173 19 0 chr3 176257763 176257815 -51266763 - L2 LINE L2 -12 3260 3208 336 319 59 8 chr3 176258091 176258210 -51266368 - MIR SINE MIR -65 143 19 1833 127 45 0 chr3 176259015 176259282 -51265296 + AluSx SINE Alu 1 279 -33 201 127 25 63 chr3 176259617 176259696 -51264882 + GA-rich Low_complexity Low_complexity 2 77 0 626 283 145 55 chr3 176259805 176260296 -51264282 + MLT1H LTR MaLR 13 547 -2 451 287 49 40 chr3 176260375 176260622 -51263956 + MLT1J LTR MaLR 232 480 -31 1394 186 14 14 chr3 176262131 176262426 -51262152 + AluSp SINE Alu 1 295 -18 2058 132 10 7 chr3 176463165 176463468 -51061110 + AluSx SINE Alu 1 304 -8 5577 116 6 2 chr3 176463971 176464788 -51059790 - HSMAR1 DNA Mariner -273 1014 195 4582 54 15 2 chr3 176464788 176465399 -51059179 + MER11B LTR ERVK 1 619 -617 862 94 0 0 chr3 176465499 176465626 -51058952 + HSMAR1 DNA Mariner 1157 1283 -4 324 246 10 11 chr3 176466172 176466287 -51058291 - L1ME LINE L1 -588 5578 5466 403 184 112 20 chr3 176466432 176466530 -51058048 + MIR SINE MIR 104 210 -52 545 286 33 29 chr3 176467796 176468041 -51056537 + MLT1K LTR MaLR 323 568 -20 204 327 103 9 chr3 176468407 176468514 -51056064 + L2 LINE L2 3197 3313 0 221 240 20 0 chr3 176468653 176468703 -51055875 + MIR3 SINE MIR 153 203 -5 4235 113 29 6 chr3 176468969 176469599 -51054979 - LTR9B LTR ERV1 0 644 1 265 216 81 14 chr3 176469619 176469693 -51054885 - MER5B DNA MER1_type -13 165 87 354 23 0 0 chr3 176470052 176470095 -51054483 + (TG)n Simple_repeat Simple_repeat 2 44 0 195 162 0 0 chr3 176472398 176472435 -51052143 + (TTCA)n Simple_repeat Simple_repeat 2 38 0 291 322 96 26 chr3 176472440 176472555 -51052023 - L2 LINE L2 -5 3267 3145 1787 166 0 4 chr3 176472610 176472887 -51051691 + AluJb SINE Alu 1 276 -36 1101 322 151 14 chr3 176473109 176473885 -51050693 - L2 LINE L2 -343 2971 2090 404 241 19 9 chr3 176473954 176474062 -51050516 + LTR33 LTR ERVL 37 145 -376 228 245 20 0 chr3 176474214 176474263 -51050315 - LTR33 LTR ERVL -259 262 213 751 155 0 0 chr3 176476017 176476174 -51048404 + FLAM_C SINE Alu 1 157 0 757 294 67 25 chr3 176476604 176477469 -51047109 - L1MEc LINE L1 -3658 2557 1643 667 208 16 0 chr3 176477469 176477594 -51046984 - FAM SINE Alu -2 47 1 2077 101 16 45 chr3 176477907 176478215 -51046363 - AluY SINE Alu -12 299 1 397 282 0 0 chr3 176479086 176479164 -51045414 - L2 LINE L2 -26 3287 3210 22 35 0 0 chr3 176479798 176479827 -51044751 + AT_rich Low_complexity Low_complexity 1 29 0 289 290 0 0 chr3 176480027 176480089 -51044489 - MIR SINE MIR -110 98 37 1879 162 13 13 chr3 176480160 176480468 -51044110 + AluJb SINE Alu 1 308 -4 229 289 21 14 chr3 176480567 176480709 -51043869 - L1MC4a LINE L1 -1799 6009 5867 280 200 0 46 chr3 176480937 176481002 -51043576 - MIR SINE MIR -64 144 83 1715 187 60 51 chr3 176481110 176481559 -51043019 - MER82 DNA MER2_type -1 652 200 1127 163 47 13 chr3 176481578 176481811 -51042767 - MER82 DNA MER2_type -405 248 8 2026 143 10 7 chr3 176481940 176482248 -51042330 + AluJb SINE Alu 1 309 -3 768 291 45 32 chr3 176482370 176482617 -51041961 + MIR SINE MIR 1 250 -12 367 129 0 16 chr3 176482667 176482729 -51041849 - MER94 DNA DNA -72 62 2 2247 140 12 25 chr3 176483054 176483454 -51041124 - L1MC1 LINE L1 -5 6328 5934 783 279 57 29 chr3 176483503 176483818 -51040760 - L2 LINE L2 -978 2336 2013 1961 164 3 0 chr3 176484273 176484578 -51040000 + AluSx SINE Alu 1 306 -6 513 268 25 6 chr3 176486055 176486212 -51038366 - Charlie8 DNA MER1_type -2211 206 47 234 0 0 0 chr3 176487617 176487643 -51036935 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 630 262 0 8 chr3 176488680 176488802 -51035776 - FLAM_A SINE Alu -12 121 1 2191 116 0 10 chr3 176489780 176490090 -51034488 + AluSg SINE Alu 1 307 -3 2706 164 57 10 chr3 176490090 176490674 -51033904 - L1MB8 LINE L1 -5 6173 5563 202 364 34 8 chr3 176490792 176490910 -51033668 + L2 LINE L2 2737 2857 -457 432 266 8 32 chr3 176491396 176491520 -51033058 + L2 LINE L2 3190 3310 -3 2089 179 87 11 chr3 176491685 176492133 -51032445 - MLT1D LTR MaLR 0 505 24 882 304 12 16 chr3 176492713 176492970 -51031608 - MIR SINE MIR 0 262 7 245 283 174 0 chr3 176494710 176494802 -51029776 - L2 LINE L2 0 3272 3165 195 270 63 16 chr3 176496988 176497051 -51027527 - L2 LINE L2 0 3272 3207 193 160 20 20 chr3 176497079 176497129 -51027449 + (TA)n Simple_repeat Simple_repeat 1 50 0 322 274 68 135 chr3 176497130 176497382 -51027196 - L2 LINE L2 -67 3205 2971 298 224 90 0 chr3 176497816 176497883 -51026695 + MIR SINE MIR 99 171 -91 2548 61 0 10 chr3 176498989 176499301 -51025277 - AluY SINE Alu -2 309 1 1885 258 51 60 chr3 176500169 176500968 -51023610 - MER21B LTR ERV1 -58 805 14 363 60 0 0 chr3 176501154 176501204 -51023374 + (CA)n Simple_repeat Simple_repeat 2 51 0 661 207 6 10 chr3 176501241 176501406 -51023172 + L1M3 LINE L1 5628 5795 -356 204 200 18 18 chr3 176501414 176501469 -51023109 + (TA)n Simple_repeat Simple_repeat 2 56 0 2043 144 0 3 chr3 176501516 176501815 -51022763 + AluSx SINE Alu 1 298 -14 1828 107 0 0 chr3 176502012 176502275 -51022303 - HSMAR1 DNA Mariner -830 457 195 6875 82 7 20 chr3 176502275 176503297 -51021281 + MER11C LTR ERVK 1 1009 -62 937 73 186 6 chr3 176503298 176503475 -51021103 - HSMAR1 DNA Mariner -1078 209 1 7179 26 5 0 chr3 176503624 176504477 -51020101 + L1PA4 LINE L1 5299 6155 0 1977 155 119 13 chr3 176505143 176505530 -51019048 - MSTA LTR MaLR 0 428 1 776 348 30 18 chr3 176506248 176506642 -51017936 + LTR16C LTR ERVL 93 491 0 191 373 0 0 chr3 176506674 176506725 -51017853 - L2 LINE L2 -48 3224 3174 10434 218 14 22 chr3 176506862 176509407 -51015171 + L1PA16 LINE L1 2764 5327 -839 1654 205 67 114 chr3 176509407 176509988 -51014590 + MLT2B3 LTR ERVL 1 554 0 10434 218 14 22 chr3 176509988 176510383 -51014195 + L1PA16 LINE L1 5327 5724 -442 2081 112 11 0 chr3 176510383 176510697 -51013881 + AluSp SINE Alu 1 317 0 10434 218 14 22 chr3 176510697 176511137 -51013441 + L1PA16 LINE L1 5724 6157 -9 23 33 0 0 chr3 176511220 176511250 -51013328 + AT_rich Low_complexity Low_complexity 1 30 0 245 207 49 49 chr3 176511657 176511739 -51012839 - MLT1K LTR MaLR -40 548 467 495 254 0 8 chr3 176511932 176512066 -51012512 + L1PA16 LINE L1 5977 6109 -57 583 127 0 0 chr3 176513556 176513635 -51010943 + AluS SINE Alu 2 79 -234 878 258 102 14 chr3 176513775 176514050 -51010528 - AluJo SINE Alu -1 301 3 665 97 0 0 chr3 176514050 176514139 -51010439 - AluJ/FLAM SINE Alu -237 75 1 1237 191 126 42 chr3 176514235 176514664 -51009914 - MER66B LTR ERV1 0 486 111 664 322 53 4 chr3 176515357 176515584 -51008994 + Charlie8 DNA MER1_type 37 274 -2143 1721 168 7 18 chr3 176515722 176516007 -51008571 - AluJo SINE Alu -30 282 1 23 0 0 0 chr3 176516015 176516038 -51008540 + AT_rich Low_complexity Low_complexity 1 23 0 213 175 0 0 chr3 176516260 176516300 -51008278 + (TAG)n Simple_repeat Simple_repeat 2 41 0 198 271 51 85 chr3 176516311 176516429 -51008149 - MIR SINE MIR -3 259 146 252 245 93 58 chr3 176516701 176516840 -51007738 + LTR16A1 LTR ERVL 304 447 -10 3557 131 8 6 chr3 176516948 176517458 -51007120 - MER9 LTR ERVK 0 511 1 239 222 56 0 chr3 176518041 176518095 -51006483 + MIR SINE MIR 107 163 -99 857 143 95 14 chr3 176518181 176518328 -51006250 + FRAM SINE Alu 2 160 -16 188 420 51 19 chr3 176518383 176518540 -51006038 + L2 LINE L2 3109 3270 -2 224 316 25 0 chr3 176519613 176519692 -51004886 - MIR3 SINE MIR -23 185 105 676 181 17 9 chr3 176519813 176519929 -51004649 + MER2 DNA MER2_type 1 117 -228 188 262 0 0 chr3 176521089 176521131 -51003447 + L2 LINE L2 3267 3308 -5 21 36 0 0 chr3 176521286 176521314 -51003264 + AT_rich Low_complexity Low_complexity 1 28 0 2127 106 35 0 chr3 176521852 176522134 -51002444 - AluSc SINE Alu -17 292 1 827 248 55 42 chr3 176522380 176522618 -51001960 + MIR SINE MIR 8 248 -14 229 175 0 0 chr3 176522739 176522779 -51001799 - Charlie8 DNA MER1_type -1001 1416 1377 7788 93 136 119 chr3 176522780 176524449 -51000129 + pTR5 LTR ERV1 741 2438 0 592 255 28 7 chr3 176524524 176524665 -50999913 - Charlie8 DNA MER1_type -2201 216 73 276 307 57 36 chr3 176524715 176524855 -50999723 - MIR3 SINE MIR -36 172 30 2278 106 3 0 chr3 176525543 176525844 -50998734 - AluSx SINE Alu -10 302 1 1683 290 121 6 chr3 176525914 176526441 -50998137 - MLT1E LTR MaLR -3 590 3 966 294 50 22 chr3 176526926 176527283 -50997295 - L1MDa LINE L1 -6140 400 34 1623 191 6 16 chr3 176527622 176527937 -50996641 + AluJo SINE Alu 1 312 0 329 222 15 29 chr3 176527963 176528075 -50996503 + L1MC5 LINE L1 7833 8042 0 440 309 165 41 chr3 176528085 176528599 -50995979 - L2 LINE L2 -610 2704 2127 249 88 0 0 chr3 176528655 176528689 -50995889 + L1MD3 LINE L1 6730 6763 -1232 278 208 52 26 chr3 176528700 176528777 -50995801 + MLT1K LTR MaLR 103 181 -286 2125 128 0 3 chr3 176528780 176529078 -50995500 + AluSx SINE Alu 3 299 -13 2144 226 166 10 chr3 176529213 176530321 -50994257 + L1MC4 LINE L1 6471 7903 -139 1555 181 7 14 chr3 176531880 176532168 -50992410 + AluJb SINE Alu 5 290 -22 264 222 48 0 chr3 176532332 176532395 -50992183 + MIR SINE MIR 120 185 -77 232 284 15 15 chr3 176532902 176532969 -50991609 + MIR SINE MIR 23 89 -173 216 0 0 0 chr3 176532970 176532994 -50991584 + (TG)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr3 176533030 176533058 -50991520 + AT_rich Low_complexity Low_complexity 1 28 0 919 279 120 21 chr3 176533469 176533845 -50990733 + MLT1K LTR MaLR 168 580 -8 317 176 43 176 chr3 176534236 176534360 -50990218 - MER112 DNA MER1_type -34 226 134 1982 159 0 10 chr3 176534360 176534668 -50989910 + AluJb SINE Alu 1 305 -7 317 176 43 176 chr3 176534668 176534730 -50989848 - MER112 DNA MER1_type -126 134 65 227 224 52 0 chr3 176534806 176534864 -50989714 + MIR SINE MIR 140 200 -62 354 252 76 86 chr3 176534919 176535102 -50989476 - L1MC4a LINE L1 -1926 5882 5702 2379 92 0 0 chr3 176535102 176535408 -50989170 + AluY SINE Alu 1 306 -5 354 252 76 86 chr3 176535408 176535514 -50989064 - L1MC4a LINE L1 -2106 5702 5596 556 306 75 70 chr3 176536025 176536542 -50988036 + MLT1K LTR MaLR 69 588 0 366 340 27 0 chr3 176536756 176536906 -50987672 + MIR3 SINE MIR 37 190 -18 1209 248 48 30 chr3 176537388 176537719 -50986859 - MER102b DNA MER1_type -4 337 1 768 304 78 35 chr3 176538260 176538579 -50985999 - MLT1E LTR MaLR 0 593 261 26 50 0 0 chr3 176538759 176538799 -50985779 + AT_rich Low_complexity Low_complexity 1 40 0 290 262 42 89 chr3 176538869 176539060 -50985518 - L1MC5 LINE L1 -33 7928 7747 23 0 0 0 chr3 176539097 176539120 -50985458 + AT_rich Low_complexity Low_complexity 1 23 0 185 237 105 0 chr3 176539137 176539175 -50985403 - L2 LINE L2 -18 3295 3254 22 35 0 0 chr3 176539349 176539378 -50985200 + AT_rich Low_complexity Low_complexity 1 29 0 2446 93 3 0 chr3 176539766 176540078 -50984500 + AluSp SINE Alu 1 313 0 2081 210 37 128 chr3 176540082 176540919 -50983659 + LTR41 LTR ERVL 7 767 -6 1751 121 105 0 chr3 176541115 176541401 -50983177 + AluSx SINE Alu 1 313 0 341 293 78 56 chr3 176541481 176541713 -50982865 + L1M4 LINE L1 3387 3623 -2523 817 94 0 0 chr3 176541939 176542045 -50982533 - AluSc SINE Alu -17 292 187 231 322 60 0 chr3 176542278 176542427 -50982151 + L1M4 LINE L1 5184 5341 -805 280 316 20 0 chr3 176542698 176542796 -50981782 + MER5A DNA MER1_type 7 106 -83 2561 49 0 3 chr3 176542866 176543170 -50981408 + AluY SINE Alu 1 303 -8 301 315 33 0 chr3 176543336 176543428 -50981150 - MIR SINE MIR -111 151 57 185 118 255 20 chr3 176543629 176543680 -50980898 - MIR SINE MIR -66 142 79 405 318 12 0 chr3 176544379 176544552 -50980026 - L1ME3A LINE L1 -296 5874 5700 441 310 7 0 chr3 176544575 176544720 -50979858 - L1ME3A LINE L1 -544 5620 5475 225 154 0 0 chr3 176544720 176544759 -50979819 + (TA)n Simple_repeat Simple_repeat 1 39 0 976 85 16 0 chr3 176544776 176544905 -50979673 - AluSc SINE Alu -178 131 1 378 240 110 12 chr3 176544950 176545169 -50979409 - L1ME3A LINE L1 -733 5431 5173 36 19 0 19 chr3 176545169 176545184 -50979394 + AT_rich Low_complexity Low_complexity 1 15 -38 1588 114 0 9 chr3 176545184 176545404 -50979174 - AluSg/x SINE Alu -24 288 71 36 19 0 19 chr3 176545404 176545442 -50979136 + AT_rich Low_complexity Low_complexity 15 53 0 525 237 0 8 chr3 176545575 176545693 -50978885 - L2 LINE L2 0 3313 3197 22 0 0 0 chr3 176545955 176545977 -50978601 + AT_rich Low_complexity Low_complexity 1 22 0 480 156 0 0 chr3 176546976 176547053 -50977525 + MER53 DNA DNA 2 78 -111 370 167 24 24 chr3 176546991 176547075 -50977503 - MER53 DNA DNA -7 182 99 * 400 203 13 0 chr3 176548238 176548317 -50976261 + MER116 DNA Mariner 1 80 0 290 350 24 8 chr3 176549327 176549450 -50975128 - MIR SINE MIR -62 146 22 213 286 108 47 chr3 176549457 176549670 -50974908 + L2 LINE L2 1701 1926 -1388 220 270 40 27 chr3 176549702 176549776 -50974802 + L2 LINE L2 3171 3245 -27 604 216 13 33 chr3 176550051 176550204 -50974374 + MIR SINE MIR 103 252 -10 413 239 146 22 chr3 176550428 176550654 -50973924 + MLT1F LTR MaLR 285 538 -4 21 82 0 0 chr3 176550839 176550888 -50973690 + AT_rich Low_complexity Low_complexity 1 49 0 349 314 62 47 chr3 176550989 176551120 -50973458 - L1MC/D LINE L1 -2213 5595 5467 2256 108 0 0 chr3 176551120 176551416 -50973162 + AluSg1 SINE Alu 1 296 -13 349 314 62 47 chr3 176551416 176551558 -50973020 - L1MC/D LINE L1 -2341 5467 5318 213 141 42 0 chr3 176551616 176551687 -50972891 + (TA)n Simple_repeat Simple_repeat 2 75 0 38 0 0 0 chr3 176551722 176551760 -50972818 + AT_rich Low_complexity Low_complexity 1 38 0 2048 122 76 60 chr3 176551945 176552314 -50972264 - THE1C LTR MaLR 0 375 1 228 200 20 0 chr3 176552892 176552942 -50971636 + L2 LINE L2 3263 3313 0 428 246 114 23 chr3 176553191 176553366 -50971212 + HsTC2 DNA Tc2 4 194 -1704 1121 223 16 8 chr3 176553391 176553633 -50970945 + HsTC2 DNA Tc2 500 743 -1155 1086 196 179 28 chr3 176553631 176553983 -50970595 + HsTC2 DNA Tc2 1272 1852 -46 * 2299 85 3 3 chr3 176554455 176554749 -50969829 + AluSp SINE Alu 1 294 -19 305 190 60 52 chr3 176554808 176554924 -50969654 - L1ME4a LINE L1 -14 6107 5991 428 249 166 28 chr3 176555220 176555473 -50969105 - L2 LINE L2 0 3313 3026 242 326 101 31 chr3 176555524 176555653 -50968925 - L2 LINE L2 -429 2885 2748 232 273 23 0 chr3 176556259 176556347 -50968231 + G-rich Low_complexity Low_complexity 4 93 0 210 118 0 0 chr3 176559293 176559327 -50965251 + (T)n Simple_repeat Simple_repeat 1 34 0 343 290 76 28 chr3 176560335 176560480 -50964098 - MIR3 SINE MIR -52 156 5 319 320 13 55 chr3 176560787 176560979 -50963599 + MIR SINE MIR 4 192 -62 381 312 99 41 chr3 176561207 176561694 -50962884 + L2 LINE L2 2325 2892 -422 6774 137 87 13 chr3 176561712 176562858 -50961720 - Tigger3b DNA MER2_type 0 1231 1 885 240 25 123 chr3 176563064 176563173 -50961405 + L2 LINE L2 2733 2851 -462 1870 149 45 3 chr3 176563173 176563462 -50961116 - AluSx SINE Alu -8 304 4 885 240 25 123 chr3 176563462 176563989 -50960589 + L2 LINE L2 2851 3313 0 274 257 152 38 chr3 176564052 176564157 -50960421 + L2 LINE L2 3156 3272 0 249 243 0 0 chr3 176564963 176565033 -50959545 + (TATG)n Simple_repeat Simple_repeat 2 71 0 2090 126 20 0 chr3 176565074 176565367 -50959211 - AluSx SINE Alu -13 299 1 399 248 118 43 chr3 176566036 176566258 -50958320 - Charlie8 DNA MER1_type -999 1418 100 322 240 47 47 chr3 176567115 176567244 -50957334 - L1MC4 LINE L1 0 8042 7914 284 226 29 10 chr3 176567623 176567725 -50956853 + (TA)n Simple_repeat Simple_repeat 2 105 0 227 143 0 0 chr3 176568382 176568417 -50956161 + L1P LINE L1 4824 4858 -1288 8437 154 27 12 chr3 176568419 176569106 -50955472 - L1P LINE L1 -1276 4870 4195 213 39 0 0 chr3 176569106 176569132 -50955446 + (TTTC)n Simple_repeat Simple_repeat 4 29 0 8437 154 27 12 chr3 176569132 176569169 -50955409 - L1P LINE L1 -1951 4195 4160 1865 126 58 58 chr3 176569169 176569533 -50955045 - THE1B LTR MaLR 0 364 1 8437 154 27 12 chr3 176569533 176570354 -50954224 - L1P LINE L1 -1986 4160 3301 231 254 39 0 chr3 176571128 176571258 -50953320 + (TTTAA)n Simple_repeat Simple_repeat 1 135 0 2607 160 5 19 chr3 176571993 176572425 -50952153 + MSTC LTR MaLR 3 428 0 888 134 0 8 chr3 176572621 176572755 -50951823 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr3 176573165 176573186 -50951392 + AT_rich Low_complexity Low_complexity 1 21 0 586 225 75 12 chr3 176574135 176574295 -50950283 + L2 LINE L2 2071 2240 -1074 199 368 59 13 chr3 176575121 176575273 -50949305 - MIR SINE MIR -2 260 102 2122 116 20 0 chr3 176575515 176575807 -50948771 - AluSx SINE Alu -14 298 1 2197 85 0 14 chr3 176575896 176576191 -50948387 - AluY SINE Alu -20 291 1 238 180 40 0 chr3 176576604 176576654 -50947924 + (TATG)n Simple_repeat Simple_repeat 2 53 0 922 96 0 0 chr3 176577179 176577294 -50947284 - AluSq/x SINE Alu -198 115 1 236 272 99 25 chr3 176578297 176578459 -50946119 - L1ME LINE L1 -223 5898 5725 21 0 0 0 chr3 176578492 176578513 -50946065 + AT_rich Low_complexity Low_complexity 1 21 0 659 263 145 26 chr3 176579128 176579356 -50945222 + MIR SINE MIR 2 256 -6 1825 168 69 6 chr3 176580976 176581309 -50943269 - MLT1A1 LTR MaLR -11 354 1 2052 129 0 20 chr3 176582049 176582351 -50942227 + AluSx SINE Alu 1 296 -16 266 155 35 0 chr3 176582702 176582760 -50941818 + CT-rich Low_complexity Low_complexity 3 62 0 726 299 62 37 chr3 176583926 176584167 -50940411 + MIR SINE MIR 11 257 -5 521 208 261 13 chr3 176584624 176584850 -50939728 + L1MD3 LINE L1 7710 7991 -4 222 37 0 0 chr3 176584985 176585012 -50939566 + (TG)n Simple_repeat Simple_repeat 2 28 0 253 314 39 34 chr3 176585372 176585576 -50939002 - L1ME3A LINE L1 -220 5950 5746 22 35 0 0 chr3 176585849 176585878 -50938700 + AT_rich Low_complexity Low_complexity 1 29 0 574 198 165 28 chr3 176588078 176588260 -50936318 - MER113 DNA MER1_type? -105 416 210 304 323 55 16 chr3 176588352 176588479 -50936099 - L1MC4 LINE L1 -118 7924 7793 435 256 47 0 chr3 176588648 176588839 -50935739 - L1MC4a LINE L1 -1798 6010 5811 245 119 68 51 chr3 176588841 176588900 -50935678 - L1MC5 LINE L1 -479 7482 7423 560 228 21 7 chr3 176588920 176589065 -50935513 - L1MC5 LINE L1 -744 7217 7071 683 224 206 0 chr3 176589078 176589306 -50935272 - L1MC5 LINE L1 -1051 6910 6636 369 130 29 0 chr3 176589369 176589438 -50935140 + L1MA10 LINE L1 6253 6323 -11 1485 273 67 44 chr3 176589539 176590133 -50934445 - L1MC5 LINE L1 -1839 5969 5362 311 272 54 0 chr3 176590773 176590865 -50933713 + L1ME LINE L1 5754 5850 -271 252 318 136 47 chr3 176592628 176592886 -50931692 - L2 LINE L2 -854 2460 2180 508 218 95 39 chr3 176592896 176593075 -50931503 + MER20B DNA MER1_type 1 189 -594 548 277 141 21 chr3 176595347 176595589 -50928989 + HAL1 LINE L1 6 276 -2231 186 43 0 0 chr3 176595595 176595618 -50928960 + (ATTG)n Simple_repeat Simple_repeat 2 24 0 365 280 216 8 chr3 176595761 176596025 -50928553 + HAL1 LINE L1 307 625 -1882 405 0 0 0 chr3 176596027 176596072 -50928506 + (TG)n Simple_repeat Simple_repeat 2 46 0 361 265 83 38 chr3 176596264 176596396 -50928182 + MIR SINE MIR 91 228 -34 4992 139 32 2 chr3 176597435 176598245 -50926333 + MER6 DNA MER2_type 32 865 0 240 346 0 13 chr3 176598245 176598323 -50926255 - MIR SINE MIR -108 154 78 23 0 0 0 chr3 176598435 176598458 -50926120 + AT_rich Low_complexity Low_complexity 1 23 0 35 0 0 0 chr3 176599297 176599332 -50925246 + AT_rich Low_complexity Low_complexity 1 35 0 2056 101 16 45 chr3 176600968 176601276 -50923302 - AluY SINE Alu -12 299 1 407 257 0 48 chr3 176602120 176602225 -50922353 - L2 LINE L2 -4 3309 3210 22 35 0 0 chr3 176602859 176602888 -50921690 + AT_rich Low_complexity Low_complexity 1 29 0 285 290 0 0 chr3 176603088 176603150 -50921428 - MIR SINE MIR -110 98 37 1850 162 13 13 chr3 176603221 176603529 -50921049 + AluJb SINE Alu 1 308 -4 264 289 21 14 chr3 176603628 176603770 -50920808 - L1MC4a LINE L1 -1799 6009 5867 277 200 0 46 chr3 176604003 176604068 -50920510 - MIR SINE MIR -64 144 83 1854 189 60 51 chr3 176604176 176604627 -50919951 - MER82 DNA MER2_type -1 652 198 1218 159 47 13 chr3 176604644 176604877 -50919701 - MER82 DNA MER2_type -405 248 8 2005 143 10 7 chr3 176605006 176605314 -50919264 + AluJb SINE Alu 1 309 -3 765 291 45 32 chr3 176605436 176605683 -50918895 + MIR SINE MIR 1 250 -12 392 167 0 14 chr3 176605723 176605795 -50918783 - MER94 DNA DNA -62 72 2 2264 140 12 25 chr3 176606120 176606520 -50918058 - L1MC1 LINE L1 -5 6328 5934 759 279 57 29 chr3 176606569 176606884 -50917694 - L2 LINE L2 -978 2336 2013 1926 164 3 0 chr3 176607339 176607644 -50916934 + AluSx SINE Alu 1 306 -6 568 332 81 3 chr3 176609016 176609314 -50915264 - MER102a DNA MER1_type -9 321 1 234 0 0 0 chr3 176610684 176610710 -50913868 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 670 238 0 8 chr3 176611747 176611869 -50912709 - FLAM_A SINE Alu -12 121 1 2172 116 0 10 chr3 176612847 176613157 -50911421 + AluSg SINE Alu 1 307 -3 2774 163 57 10 chr3 176613157 176613741 -50910837 - L1MB8 LINE L1 -5 6173 5563 204 364 34 8 chr3 176613859 176613977 -50910601 + L2 LINE L2 2737 2857 -457 432 266 8 32 chr3 176614463 176614587 -50909991 + L2 LINE L2 3190 3310 -3 2246 179 87 11 chr3 176614752 176615200 -50909378 - MLT1D LTR MaLR 0 505 24 195 270 63 16 chr3 176616885 176616948 -50907630 - L2 LINE L2 0 3272 3207 193 160 20 20 chr3 176616976 176617026 -50907552 + (TA)n Simple_repeat Simple_repeat 1 50 0 307 278 68 135 chr3 176617027 176617279 -50907299 - L2 LINE L2 -67 3205 2971 298 224 90 0 chr3 176617713 176617780 -50906798 + MIR SINE MIR 99 171 -91 2548 61 0 10 chr3 176618886 176619198 -50905380 - AluY SINE Alu -2 309 1 1876 258 51 60 chr3 176620066 176620865 -50903713 - MER21B LTR ERV1 -58 805 14 291 71 0 0 chr3 176621051 176621093 -50903485 + (CA)n Simple_repeat Simple_repeat 2 43 0 661 207 6 10 chr3 176621130 176621295 -50903283 + L1M3 LINE L1 5628 5795 -356 204 200 18 18 chr3 176621303 176621358 -50903220 + (TA)n Simple_repeat Simple_repeat 2 56 0 2043 144 0 3 chr3 176621405 176621704 -50902874 + AluSx SINE Alu 1 298 -14 2273 91 13 0 chr3 176621813 176622111 -50902467 - AluSc SINE Alu -2 307 6 583 143 0 0 chr3 176622334 176622418 -50902160 - AluJ/FLAM SINE Alu -224 88 5 27 29 0 0 chr3 176622457 176622491 -50902087 + AT_rich Low_complexity Low_complexity 1 34 0 566 195 71 5 chr3 176623815 176623977 -50900601 - MER20 DNA MER1_type 0 219 16 2304 106 0 0 chr3 176624261 176624563 -50900015 - AluY SINE Alu -9 302 1 213 297 136 84 chr3 176624591 176624746 -50899832 - MER5B DNA MER1_type 0 178 16 26 50 0 0 chr3 176624926 176624966 -50899612 + AT_rich Low_complexity Low_complexity 1 40 0 1990 133 14 0 chr3 176625156 176625459 -50899119 + AluSx SINE Alu 1 307 0 393 198 93 0 chr3 176626624 176626710 -50897868 + MIR SINE MIR 39 132 -76 22 0 0 0 chr3 176627209 176627231 -50897347 + AT_rich Low_complexity Low_complexity 1 22 0 390 165 72 0 chr3 176628194 176628291 -50896287 - MER112 DNA MER1_type -140 120 17 1504 146 88 37 chr3 176628759 176629054 -50895524 - AluJb SINE Alu -2 310 1 767 265 37 29 chr3 176629129 176629374 -50895204 - MIR SINE MIR -3 259 13 389 347 198 20 chr3 176629895 176630244 -50894334 - L2 LINE L2 0 3272 2862 880 307 163 44 chr3 176630362 176631273 -50893305 - L2 LINE L2 -675 2639 1621 5111 103 14 0 chr3 176633033 176633806 -50890772 + L1PB2 LINE L1 5364 6147 -4 17663 176 70 39 chr3 176633850 176635931 -50888647 - L1MA1 LINE L1 -2 7719 5703 13631 32 5 0 chr3 176635931 176638341 -50886237 - L1PA4 LINE L1 -4 6151 3736 17663 176 70 39 chr3 176638341 176639248 -50885330 - L1MA1 LINE L1 -2018 5703 4825 1917 136 29 16 chr3 176639248 176639556 -50885022 - AluSx SINE Alu 0 312 1 17663 176 70 39 chr3 176639556 176641243 -50883335 - L1MA1 LINE L1 -2896 4825 3191 595 145 8 113 chr3 176641243 176641303 -50883275 - FLAM_C SINE Alu -185 127 85 6058 106 19 1 chr3 176641303 176643196 -50881382 + L1PA11 LINE L1 4254 6171 -3 595 145 8 113 chr3 176643196 176643259 -50881319 - FLAM_C SINE Alu -227 85 17 17663 176 70 39 chr3 176643259 176643690 -50880888 - L1MA1 LINE L1 -4530 3191 2775 2310 116 0 3 chr3 176643690 176643993 -50880585 - AluSx SINE Alu -10 302 1 17663 176 70 39 chr3 176643993 176645341 -50879237 - L1MA1 LINE L1 -4946 2775 1469 1548 95 0 5 chr3 176645341 176645541 -50879037 - AluSq SINE Alu -114 199 1 17663 176 70 39 chr3 176645541 176645586 -50878992 - L1MA1 LINE L1 -6252 1469 1427 2128 110 7 23 chr3 176645586 176645886 -50878692 + AluSx SINE Alu 1 295 -17 17663 176 70 39 chr3 176645886 176646665 -50877913 - L1MA1 LINE L1 -6294 1427 18 258 156 0 0 chr3 176646768 176646813 -50877765 + (TG)n Simple_repeat Simple_repeat 2 46 0 1645 180 26 36 chr3 176646983 176647289 -50877289 + AluJo SINE Alu 1 303 -9 1753 136 52 78 chr3 176647457 176647802 -50876776 - MER1B DNA MER1_type -1 336 1 517 299 87 7 chr3 176647829 176648117 -50876461 - L1ME LINE L1 -401 5720 5410 234 0 0 0 chr3 176648143 176648169 -50876409 + (TG)n Simple_repeat Simple_repeat 2 27 0 289 281 91 24 chr3 176648283 176648493 -50876085 - MARNA DNA Mariner -25 561 338 745 192 0 0 chr3 176648579 176648704 -50875874 + FLAM_C SINE Alu 1 125 -18 557 295 174 33 chr3 176648966 176649631 -50874947 - L2 LINE L2 -337 2977 2219 328 295 224 35 chr3 176649955 176650439 -50874139 + L2 LINE L2 2700 3270 -2 1518 176 30 52 chr3 176650462 176650826 -50873752 - MLT1A1 LTR MaLR 0 365 10 21 0 0 0 chr3 176651073 176651094 -50873484 + AT_rich Low_complexity Low_complexity 1 21 0 270 73 0 0 chr3 176651405 176651446 -50873132 + (T)n Simple_repeat Simple_repeat 1 41 0 7858 17 0 0 chr3 176651462 176652455 -50872123 - L1PA2 LINE L1 -2 6153 5161 393 272 63 76 chr3 176653735 176653893 -50870685 - MIR3 SINE MIR -48 160 5 2266 111 16 0 chr3 176654239 176654546 -50870032 + AluSq SINE Alu 1 312 -1 2082 40 0 4 chr3 176654622 176654870 -50869708 + AluY SINE Alu 65 311 0 205 312 97 14 chr3 176655034 176655170 -50869408 - MIR SINE MIR -64 144 40 189 260 39 39 chr3 176655360 176655437 -50869141 - L2 LINE L2 -208 3064 2988 344 258 17 42 chr3 176655759 176655879 -50868699 + L1MC4a LINE L1 5158 5274 -872 798 153 43 12 chr3 176655907 176656070 -50868508 + MLT1C LTR MaLR 250 417 -50 1153 285 57 7 chr3 176656217 176656642 -50867936 + L1MC4a LINE L1 5449 5894 -1914 294 273 30 10 chr3 176656758 176656857 -50867721 - L2 LINE L2 -880 2434 2334 622 271 73 0 chr3 176656922 176657099 -50867479 - MIR SINE MIR -56 206 17 812 311 29 4 chr3 176657305 176657546 -50867032 + MIR SINE MIR 7 253 -9 207 336 66 7 chr3 176657575 176657712 -50866866 - L2 LINE L2 -1465 1849 1705 2800 185 30 25 chr3 176658199 176658805 -50865773 + L1MB5 LINE L1 5566 6174 0 219 366 13 20 chr3 176659695 176659848 -50864730 - L3b LINE CR1 -255 1328 1177 298 253 23 11 chr3 176661155 176661242 -50863336 - MIR SINE MIR -38 224 137 324 0 0 0 chr3 176661587 176661623 -50862955 + (CA)n Simple_repeat Simple_repeat 2 37 0 2176 94 49 0 chr3 176662219 176662507 -50862071 - AluY SINE Alu -9 302 1 2301 87 3 7 chr3 176663063 176663363 -50861215 - AluSp SINE Alu -14 299 1 303 93 0 0 chr3 176663363 176663406 -50861172 + (T)n Simple_repeat Simple_repeat 1 43 0 967 179 0 0 chr3 176664134 176664290 -50860288 - FAM SINE Alu -17 168 13 955 158 9 50 chr3 176664478 176664699 -50859879 - MER20 DNA MER1_type -6 213 2 487 113 21 72 chr3 176665105 176665202 -50859376 - MLT1C LTR MaLR 0 467 376 403 269 111 0 chr3 176665203 176665311 -50859267 - MIR SINE MIR -112 150 31 613 207 7 15 chr3 176666318 176666453 -50858125 + MIR SINE MIR 88 221 -41 817 232 24 91 chr3 176667568 176667757 -50856821 - MIR SINE MIR -23 239 70 2096 103 30 17 chr3 176667757 176668057 -50856521 - AluSc SINE Alu -5 304 1 817 232 24 91 chr3 176668057 176668121 -50856457 - MIR SINE MIR -192 70 3 476 301 61 90 chr3 176669437 176669674 -50854904 - L1M4 LINE L1 -1167 4979 4762 1976 62 11 29 chr3 176669674 176669948 -50854630 - AluY SINE Alu -2 309 41 476 301 61 90 chr3 176669948 176670188 -50854390 - L1M4 LINE L1 -1384 4762 4516 2006 104 37 0 chr3 176672196 176672465 -50852113 + AluSx SINE Alu 1 279 -33 315 0 0 0 chr3 176672465 176672500 -50852078 + (CA)n Simple_repeat Simple_repeat 1 35 0 2365 247 125 49 chr3 176673662 176674176 -50850402 - L2 LINE L2 -2138 1176 703 438 20 0 0 chr3 176674176 176674227 -50850351 + (GA)n Simple_repeat Simple_repeat 1 51 0 384 22 0 0 chr3 176674226 176674271 -50850307 + (TG)n Simple_repeat Simple_repeat 1 45 0 * 2365 247 125 49 chr3 176674227 176674820 -50849758 - L2 LINE L2 -2611 703 32 2347 179 31 21 chr3 176676459 176676939 -50847639 - MER31A LTR ERV1 0 485 1 4028 105 61 2 chr3 176677113 176677752 -50846826 + Tigger1 DNA MER2_type 1465 2141 -277 414 271 8 30 chr3 176679441 176679574 -50845004 - MER94 DNA DNA -4 130 1 41 72 0 0 chr3 176679574 176679657 -50844921 + AT_rich Low_complexity Low_complexity 1 83 0 312 242 55 55 chr3 176679689 176679780 -50844798 - MIR SINE MIR -99 109 19 2124 139 0 3 chr3 176679950 176680259 -50844319 - AluSx SINE Alu -4 308 1 357 347 32 16 chr3 176680713 176680837 -50843741 - L2 LINE L2 -4 3309 3184 590 300 55 58 chr3 176680968 176681298 -50843280 - L2 LINE L2 -148 3165 2837 281 281 104 10 chr3 176681434 176681530 -50843048 + MER5C DNA MER1_type 220 324 0 447 226 116 44 chr3 176681631 176681812 -50842766 - L2 LINE L2 -691 2623 2430 183 322 132 31 chr3 176682198 176682425 -50842153 + L2 LINE L2 2402 2651 -663 2226 80 14 0 chr3 176684969 176685257 -50839321 - AluSp SINE Alu -21 292 1 198 0 0 0 chr3 176685893 176685915 -50838663 + (GA)n Simple_repeat Simple_repeat 2 23 0 304 333 48 30 chr3 176686118 176686283 -50838295 + MIR SINE MIR 90 257 -5 201 415 43 11 chr3 176686260 176686354 -50838224 - L2 LINE L2 -55 3217 3121 * 400 278 74 0 chr3 176686381 176686489 -50838089 - L2 LINE L2 0 3313 3198 450 225 12 38 chr3 176686637 176686797 -50837781 + L1ME3 LINE L1 5868 6023 -139 221 292 101 11 chr3 176687184 176687273 -50837305 + MIR SINE MIR 153 249 -13 22 70 0 0 chr3 176687418 176687461 -50837117 + AT_rich Low_complexity Low_complexity 1 43 0 307 320 51 34 chr3 176688267 176688445 -50836133 + MIR SINE MIR 31 211 -51 2139 69 80 0 chr3 176688869 176689145 -50835433 - AluY SINE Alu -13 298 1 1843 126 0 36 chr3 176691185 176691463 -50833115 - AluSx SINE Alu -44 268 1 243 0 0 0 chr3 176691479 176691506 -50833072 + (A)n Simple_repeat Simple_repeat 1 27 0 2119 198 90 57 chr3 176693142 176693743 -50830835 - MLT1E3 LTR MaLR -3 621 1 578 307 5 14 chr3 176694622 176694834 -50829744 - LTR16A LTR ERVL -225 225 16 777 301 48 23 chr3 176694853 176695332 -50829246 + L1M4 LINE L1 2332 2822 -3324 4393 171 102 11 chr3 176695374 176696585 -50827993 + L1MC2 LINE L1 5017 6344 0 1284 236 86 18 chr3 176696581 176697446 -50827132 + L1MDa LINE L1 1985 2896 -3644 * 36880 75 11 7 chr3 176697540 176703655 -50820923 + L1PA5 LINE L1 13 6154 0 1467 259 161 15 chr3 176703687 176704748 -50819830 + L1MDa LINE L1 3033 4248 -2292 870 165 270 29 chr3 176704751 176705096 -50819482 + MSTC LTR MaLR 1 428 0 566 226 36 18 chr3 176705222 176705265 -50819313 + Zaphod DNA AcHobo 3861 3902 -129 1900 141 40 0 chr3 176705265 176705542 -50819036 - AluJb SINE Alu -24 288 1 566 226 36 18 chr3 176705542 176705666 -50818912 + Zaphod DNA AcHobo 3902 4031 0 2949 181 51 40 chr3 176706452 176707111 -50817467 + L1ME1 LINE L1 5378 6049 -117 2253 85 0 20 chr3 176707111 176707405 -50817173 + AluSg SINE Alu 1 288 -22 2949 181 51 40 chr3 176707405 176707504 -50817074 + L1ME1 LINE L1 6049 6145 -21 27 0 0 0 chr3 176707508 176707535 -50817043 + AT_rich Low_complexity Low_complexity 1 27 0 1968 160 0 3 chr3 176708955 176709285 -50815293 + AluJb SINE Alu 1 312 0 521 289 91 13 chr3 176709293 176709525 -50815053 - MLT1L LTR MaLR -39 576 327 322 301 93 41 chr3 176709551 176709820 -50814758 - MLT1L LTR MaLR -332 283 1 502 223 277 5 chr3 176709948 176710036 -50814542 - MIR SINE MIR 0 262 199 2112 139 9 12 chr3 176710036 176710381 -50814197 + MER2 DNA MER2_type 1 344 0 502 223 277 5 chr3 176710381 176710494 -50814084 - MIR SINE MIR -63 199 6 219 88 0 0 chr3 176710909 176710943 -50813635 + (TA)n Simple_repeat Simple_repeat 1 34 0 22 0 0 0 chr3 176713295 176713317 -50811261 + AT_rich Low_complexity Low_complexity 1 22 0 2211 113 0 10 chr3 176713408 176713710 -50810868 - AluSx SINE Alu -13 299 1 786 176 0 122 chr3 176713884 176714072 -50810506 - AluJb SINE Alu -11 301 137 483 242 163 26 chr3 176714073 176714263 -50810315 - MER58A DNA MER1_type -7 217 2 397 165 13 13 chr3 176714552 176714631 -50809947 - MER20 DNA MER1_type -140 79 1 797 185 76 0 chr3 176715949 176716106 -50808472 + MER58A DNA MER1_type 47 215 -9 708 271 200 31 chr3 176716444 176716998 -50807580 - HAL1b LINE L1 -202 1146 499 23 33 0 0 chr3 176718918 176718948 -50805630 + AT_rich Low_complexity Low_complexity 1 30 0 1991 138 3 3 chr3 176719113 176719410 -50805168 - AluSx SINE Alu -15 297 1 236 304 45 27 chr3 176720521 176720633 -50803945 + L1ME3A LINE L1 596 709 -5410 338 227 138 64 chr3 176720700 176720903 -50803675 + L1ME3A LINE L1 3527 3744 -2385 356 282 120 61 chr3 176720908 176721677 -50802901 + L1ME3A LINE L1 3779 4592 -1537 670 186 0 24 chr3 176721755 176721879 -50802699 - FRAM SINE Alu -20 156 36 322 290 97 39 chr3 176721879 176722189 -50802389 + L1ME3A LINE L1 4663 4990 -1139 1878 107 18 39 chr3 176722308 176722588 -50801990 + AluSx SINE Alu 3 276 -36 243 0 0 0 chr3 176722594 176722621 -50801957 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 670 232 106 35 chr3 176722730 176723001 -50801577 + L1ME3A LINE L1 5309 5602 -527 683 154 0 0 chr3 176723001 176723111 -50801467 + AluSg/x SINE Alu 201 310 0 289 262 58 84 chr3 176723290 176723481 -50801097 + L1ME3A LINE L1 5915 6100 -53 28 29 0 0 chr3 176723912 176723947 -50800631 + AT_rich Low_complexity Low_complexity 1 35 0 298 256 0 35 chr3 176724297 176724444 -50800134 - MIR SINE MIR 0 262 35 2027 107 23 17 chr3 176725286 176725585 -50798993 + AluSx SINE Alu 1 301 -11 2852 3 0 3 chr3 176725784 176726095 -50798483 + AluYa5 SINE Alu 1 310 -1 957 265 65 12 chr3 176726945 176727190 -50797388 + MIR SINE MIR 5 262 0 315 0 0 0 chr3 176727660 176727695 -50796883 + (CA)n Simple_repeat Simple_repeat 2 36 0 1740 172 0 7 chr3 176728231 176728521 -50796057 + AluJo SINE Alu 1 288 -24 304 141 179 0 chr3 176730373 176730451 -50794127 + LTR57-int LTR ERVL 1233 1324 -4019 1576 174 27 24 chr3 176730713 176731006 -50793572 - AluJb SINE Alu -17 295 2 2475 39 0 0 chr3 176731126 176731435 -50793143 + AluY SINE Alu 1 309 0 266 250 73 22 chr3 176731873 176732009 -50792569 + L1MC5 LINE L1 7303 7445 -516 254 276 141 12 chr3 176732153 176732323 -50792255 + L1MC5 LINE L1 7609 7800 -161 2230 112 0 0 chr3 176732364 176732658 -50791920 + AluSg1 SINE Alu 1 294 -15 23 33 0 0 chr3 176733489 176733519 -50791059 + AT_rich Low_complexity Low_complexity 1 30 0 2059 115 7 0 chr3 176733568 176733856 -50790722 + AluY SINE Alu 1 290 -21 23 0 0 0 chr3 176733856 176733879 -50790699 + AT_rich Low_complexity Low_complexity 1 23 0 1997 133 3 3 chr3 176733923 176734217 -50790361 + AluSx SINE Alu 1 294 -18 336 349 95 18 chr3 176734347 176734516 -50790062 + MER5A DNA MER1_type 8 189 0 2038 132 10 7 chr3 176734998 176735301 -50789277 - AluSx SINE Alu -8 304 1 317 310 11 58 chr3 176736386 176736560 -50788018 - MER5B DNA MER1_type -10 168 3 226 246 35 52 chr3 176736574 176736635 -50787943 - MIR SINE MIR -110 98 44 357 254 193 9 chr3 176736836 176736950 -50787628 + MIR SINE MIR 2 136 -72 477 204 99 86 chr3 176737678 176737729 -50786849 - MER5B DNA MER1_type 0 178 129 2008 130 3 7 chr3 176737729 176738022 -50786556 + AluSx SINE Alu 1 292 -20 477 204 99 86 chr3 176738022 176738132 -50786446 - MER5B DNA MER1_type -49 129 15 464 269 94 6 chr3 176739227 176739387 -50785191 + MIR SINE MIR 77 250 -12 22 0 0 0 chr3 176739613 176739635 -50784943 + AT_rich Low_complexity Low_complexity 1 22 0 1559 185 25 0 chr3 176740424 176740705 -50783873 + AluJo SINE Alu 2 289 -23 4196 170 69 12 chr3 176742085 176743151 -50781427 + L1PB4 LINE L1 5019 6144 -12 955 172 109 10 chr3 176743501 176743693 -50780885 - MER46A DNA MER2_type 0 236 26 1781 190 0 0 chr3 176743839 176744139 -50780439 + AluJb SINE Alu 1 300 -12 24 0 0 0 chr3 176745303 176745327 -50779251 + AT_rich Low_complexity Low_complexity 1 24 0 2315 94 10 3 chr3 176745434 176745741 -50778837 + AluSc SINE Alu 1 309 0 354 45 0 0 chr3 176745742 176745786 -50778792 + (TA)n Simple_repeat Simple_repeat 2 45 0 448 238 197 40 chr3 176745895 176746063 -50778515 - L2 LINE L2 -4 3309 3096 222 37 0 0 chr3 176746063 176746090 -50778488 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 448 238 197 40 chr3 176746090 176746144 -50778434 - L2 LINE L2 -217 3096 3052 23 54 0 0 chr3 176746211 176746248 -50778330 + AT_rich Low_complexity Low_complexity 1 37 0 182 264 44 55 chr3 176747136 176747227 -50777351 + MIR SINE MIR 160 249 -13 2024 113 49 3 chr3 176747474 176747758 -50776820 + AluSg SINE Alu 1 297 -13 387 0 0 0 chr3 176747766 176747809 -50776769 + (TA)n Simple_repeat Simple_repeat 2 44 0 22 56 0 0 chr3 176747992 176748028 -50776550 + AT_rich Low_complexity Low_complexity 1 36 0 1878 150 0 0 chr3 176748316 176748590 -50775988 + AluJo SINE Alu 12 285 -27 357 335 138 0 chr3 176748731 176748898 -50775680 + MIR SINE MIR 48 237 -25 180 0 0 0 chr3 176750244 176750264 -50774314 + (CAAAA)n Simple_repeat Simple_repeat 4 23 0 239 202 242 24 chr3 176752746 176752870 -50771708 + MER112 DNA MER1_type 17 167 -93 262 324 127 32 chr3 176754265 176754580 -50769998 + L2 LINE L2 1313 1657 -1657 414 225 0 0 chr3 176754627 176754707 -50769871 + MLT1I LTR MaLR 324 403 -6 883 302 61 87 chr3 176754719 176755870 -50768708 + L2 LINE L2 1637 2757 -557 365 294 59 20 chr3 176755946 176756150 -50768428 - MER112 DNA MER1_type -48 212 1 250 379 120 46 chr3 176756194 176756545 -50768033 + L2 LINE L2 2891 3267 -5 1645 127 116 8 chr3 176756585 176756852 -50767726 + AluSg1 SINE Alu 1 296 -13 449 316 189 10 chr3 176757221 176757518 -50767060 - L2 LINE L2 -567 2747 2398 2427 75 0 0 chr3 176757961 176758256 -50766322 + AluSx SINE Alu 1 295 -17 25 31 0 0 chr3 176758355 176758387 -50766191 + AT_rich Low_complexity Low_complexity 1 32 0 257 227 82 41 chr3 176760587 176760684 -50763894 + MER34 LTR ERV1 437 537 -5 419 297 102 71 chr3 176760973 176761375 -50763203 - L2 LINE L2 -618 2696 2275 2224 113 13 0 chr3 176761375 176761677 -50762901 + AluSx SINE Alu 1 306 -6 419 297 102 71 chr3 176761677 176761766 -50762812 - L2 LINE L2 -1039 2275 2190 751 235 60 60 chr3 176761890 176762141 -50762437 + MLT1A2 LTR MaLR 1 251 -123 1481 186 28 38 chr3 176762145 176762436 -50762142 - AluJo SINE Alu -18 294 7 4461 155 86 14 chr3 176762441 176763269 -50761309 + MER4D LTR ERV1 7 893 -10 740 203 8 0 chr3 176763276 176763409 -50761169 + MLT1A2 LTR MaLR 237 370 -4 253 124 22 169 chr3 176763493 176763525 -50761053 + MLT1D LTR MaLR 8 43 -462 1891 171 0 19 chr3 176763525 176763835 -50760743 - AluJb SINE Alu -8 304 1 253 124 22 169 chr3 176763835 176763891 -50760687 + MLT1D LTR MaLR 43 83 -422 1937 198 16 4 chr3 176763912 176764376 -50760202 + MLT2B1 LTR ERVL 1 520 0 1008 214 79 16 chr3 176764379 176764631 -50759947 + MLT1D LTR MaLR 113 380 -125 651 173 0 0 chr3 176764625 176764729 -50759849 + U13 snRNA snRNA 1 104 0 * 530 207 76 21 chr3 176764749 176764894 -50759684 + MLT1D LTR MaLR 353 505 0 926 221 65 59 chr3 176765772 176766062 -50758516 - MLT1G1 LTR MaLR -259 336 45 1315 153 13 8 chr3 176766062 176766298 -50758280 + AluJo SINE Alu 72 308 -4 2161 116 26 0 chr3 176766777 176767079 -50757499 + AluSx SINE Alu 1 310 -2 534 304 68 41 chr3 176767715 176768008 -50756570 + MLT1J1 LTR MaLR 1 301 -145 240 284 49 49 chr3 176768056 176768158 -50756420 - MLT2E LTR ERVL -490 138 37 1148 296 81 11 chr3 176768311 176768904 -50755674 + L2 LINE L2 2505 3145 -168 1850 234 35 40 chr3 176769012 176769585 -50754993 + MER77 LTR ERV1 53 673 -7 189 296 0 51 chr3 176769665 176769763 -50754815 + L2 LINE L2 3221 3313 0 678 278 11 21 chr3 176774046 176774237 -50750341 + MER5A DNA MER1_type 1 189 0 396 290 11 0 chr3 176774409 176774502 -50750076 - MER81 DNA DNA 0 114 21 2425 67 0 10 chr3 176774685 176774997 -50749581 - AluY SINE Alu -2 309 1 2209 111 0 0 chr3 176775627 176775925 -50748653 - AluSg SINE Alu -12 298 1 499 310 156 40 chr3 176776136 176776198 -50748380 + L1MC4a LINE L1 4104 4157 -1989 503 18 0 0 chr3 176776198 176776255 -50748323 + (TA)n Simple_repeat Simple_repeat 2 58 0 499 310 156 40 chr3 176776255 176777305 -50747273 + L1MC4a LINE L1 4157 5398 -748 1921 139 10 13 chr3 176777317 176777619 -50746959 - AluSx SINE Alu -11 301 1 294 297 65 39 chr3 176777843 176778075 -50746503 + L1MC4a LINE L1 5693 5930 -1878 1460 188 6 67 chr3 176778594 176778924 -50745654 + AluJb SINE Alu 1 310 -2 1572 239 51 18 chr3 176779371 176779823 -50744755 + MLT1C LTR MaLR 1 467 0 363 308 30 15 chr3 176779926 176780059 -50744519 + L2 LINE L2 3137 3271 -1 479 280 48 8 chr3 176780772 176780897 -50743681 - MIR SINE MIR -63 145 16 1970 144 16 3 chr3 176781500 176781806 -50742772 - AluSx SINE Alu -2 310 1 390 298 0 68 chr3 176781879 176782040 -50742538 - MIR SINE MIR -10 252 103 311 319 49 48 chr3 176782046 176782105 -50742473 - MIR SINE MIR -5 257 200 2612 109 8 11 chr3 176782105 176782481 -50742097 - THE1C LTR MaLR 0 375 1 311 319 49 48 chr3 176782481 176782668 -50741910 - MIR SINE MIR -62 200 8 201 383 0 0 chr3 176782903 176782963 -50741615 + MIR3 SINE MIR 104 163 -45 * 469 207 0 0 chr3 176782941 176783028 -50741550 + MIR SINE MIR 176 262 0 197 342 139 0 chr3 176783034 176783113 -50741465 - L2 LINE L2 -830 2484 2395 4834 249 40 28 chr3 176783191 176784850 -50739728 + L1MCa LINE L1 2437 4115 -2311 410 216 11 0 chr3 176784850 176784938 -50739640 - AluJb SINE Alu -11 301 213 1155 188 5 5 chr3 176784938 176785140 -50739438 + AluJb SINE Alu 108 309 -3 2783 249 33 30 chr3 176785141 176785669 -50738909 + L1MCa LINE L1 4444 4978 -1448 1926 158 30 3 chr3 176785669 176786004 -50738574 + MER2 DNA MER2_type 1 344 0 2783 249 33 30 chr3 176786004 176786474 -50738104 + L1MCa LINE L1 4978 5445 -981 462 227 10 10 chr3 176786492 176786589 -50737989 - MER5A DNA MER1_type -83 106 10 219 221 59 15 chr3 176789156 176789224 -50735354 - MIR SINE MIR -36 226 156 228 217 0 0 chr3 176789224 176789270 -50735308 + MER46C DNA MER2_type 1 46 -292 296 297 93 34 chr3 176789293 176789411 -50735167 - L3 LINE CR1 -257 1320 1196 248 274 176 0 chr3 176789530 176789632 -50734946 + L2 LINE L2 3183 3302 -11 2076 114 0 0 chr3 176789958 176790238 -50734340 - AluSg SINE Alu -30 280 1 457 299 25 15 chr3 176790914 176791111 -50733467 + L1MB8 LINE L1 5941 6139 -39 623 122 11 0 chr3 176791115 176791205 -50733373 - THE1C LTR MaLR 0 375 285 10084 37 21 2 chr3 176791227 176793212 -50731366 + L1PA3 LINE L1 4124 6153 -2 1530 288 43 20 chr3 176794147 176794714 -50729864 + MLT2E LTR ERVL 3 628 0 1078 244 0 12 chr3 176795139 176795381 -50729197 + Charlie1a DNA MER1_type 51 289 -1166 656 236 0 0 chr3 176795385 176795512 -50729066 - MIR SINE MIR -104 158 32 295 308 13 0 chr3 176795534 176795612 -50728966 - L2 LINE L2 0 3313 3235 340 245 0 20 chr3 176795674 176795776 -50728802 + HAL1b LINE L1 1242 1341 -7 308 328 58 35 chr3 176796777 176796948 -50727630 - MER5B DNA MER1_type -3 175 1 2197 51 0 0 chr3 176796967 176797221 -50727357 + AluY SINE Alu 50 303 -8 324 207 0 0 chr3 176797433 176797491 -50727087 + MER69 DNA AcHobo 10 67 -110 416 231 39 31 chr3 176797652 176797782 -50726796 + MER69 DNA AcHobo 2396 2526 0 337 343 152 14 chr3 176797913 176798190 -50726388 - L2 LINE L2 -341 2973 2659 569 187 21 126 chr3 176798191 176798468 -50726110 - MSTC LTR MaLR 0 396 128 855 190 18 197 chr3 176798468 176798748 -50725830 + LTR28 LTR ERV1 1 887 -841 565 218 19 70 chr3 176798753 176798909 -50725669 + MER52A LTR ERV1 1080 1227 -528 691 183 8 16 chr3 176799102 176799228 -50725350 - MSTC LTR MaLR -303 125 1 7384 207 39 50 chr3 176799228 176800980 -50723598 - MSTC-int LTR MaLR 0 1735 4 4723 166 30 9 chr3 176800981 176801865 -50722713 + MER4D LTR ERV1 1 903 0 682 185 54 0 chr3 176801873 176802003 -50722575 - MLT1A1 LTR MaLR -2 363 227 5138 70 36 0 chr3 176802016 176802713 -50721865 + LTR30 LTR ERV1 1 722 0 26023 89 11 8 chr3 176802713 176806167 -50718411 + HERV30 LTR ERV1 1 3462 -4795 6318 111 24 2 chr3 176806160 176807055 -50717523 + HERV30 LTR ERV1 7344 8257 0 * 2993 51 31 3 chr3 176807055 176807445 -50717133 + LTR30 LTR ERV1 1 401 -321 377 120 0 152 chr3 176807454 176807546 -50717032 - MLT1A1 LTR MaLR -350 78 1 813 280 144 54 chr3 176807546 176808228 -50716350 - L2 LINE L2 -652 2662 1920 449 207 12 0 chr3 176808763 176808845 -50715733 + L2 LINE L2 3231 3313 0 207 191 0 0 chr3 176808884 176808926 -50715652 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 1904 155 6 22 chr3 176809068 176809385 -50715193 - AluSx SINE Alu 0 312 1 2538 192 11 36 chr3 176810572 176811094 -50713484 + MLT2B1 LTR ERVL 12 520 0 486 300 147 0 chr3 176811691 176811861 -50712717 + MIR SINE MIR 2 196 -66 360 0 0 0 chr3 176812261 176812301 -50712277 + (TTA)n Simple_repeat Simple_repeat 1 40 0 1973 124 4 0 chr3 176812303 176812578 -50712000 - AluSx SINE Alu -36 276 1 2736 190 51 97 chr3 176812615 176813001 -50711577 - L1ME1 LINE L1 -15 6151 5749 1767 157 3 37 chr3 176813001 176813301 -50711277 - AluSx SINE Alu -17 295 6 2736 190 51 97 chr3 176813301 176813871 -50710707 - L1ME1 LINE L1 -417 5749 5262 2863 10 0 0 chr3 176813871 176814181 -50710397 + AluYb8 SINE Alu 1 310 -8 2736 190 51 97 chr3 176814181 176814279 -50710299 - L1ME1 LINE L1 -904 5262 5161 1620 209 63 33 chr3 176814320 176814807 -50709771 - L1 LINE L1 -961 5185 4687 453 19 0 0 chr3 176815070 176815124 -50709454 + (GA)n Simple_repeat Simple_repeat 1 54 0 385 210 0 0 chr3 176815457 176815519 -50709059 - AluJ/FLAM SINE Alu -240 62 1 368 300 125 19 chr3 176815857 176816017 -50708561 - MER5B DNA MER1_type 0 178 2 1852 165 16 75 chr3 176818611 176818999 -50705579 + MLT1A1 LTR MaLR 1 365 0 350 242 85 121 chr3 176819463 176819628 -50704950 - MIR3 SINE MIR 0 208 50 183 384 35 0 chr3 176820398 176820484 -50704094 + MIR SINE MIR 17 105 -157 2188 85 3 3 chr3 176820602 176820897 -50703681 - AluY SINE Alu 0 311 17 21 71 0 0 chr3 176820983 176821025 -50703553 + AT_rich Low_complexity Low_complexity 1 42 0 25 0 0 0 chr3 176821781 176821806 -50702772 + AT_rich Low_complexity Low_complexity 1 25 0 251 276 221 8 chr3 176822230 176822357 -50702221 + L2 LINE L2 3117 3270 -2 198 191 0 0 chr3 176823197 176823239 -50701339 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 297 0 0 0 chr3 176823784 176823817 -50700761 + (CA)n Simple_repeat Simple_repeat 2 34 0 219 69 0 0 chr3 176823971 176824000 -50700578 + (TTCA)n Simple_repeat Simple_repeat 2 30 0 1110 285 29 57 chr3 176824071 176824548 -50700030 + L1M3d LINE L1 2 465 -5426 * 3460 260 73 28 chr3 176824519 176826601 -50697977 + L1M3 LINE L1 211 2043 -3927 12169 207 59 16 chr3 176826704 176827276 -50697302 + L1M3 LINE L1 2077 2623 -3369 203 53 0 53 chr3 176827276 176827314 -50697264 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 12169 207 59 16 chr3 176827314 176829814 -50694764 + L1M3 LINE L1 2623 5298 -694 198 71 0 0 chr3 176830349 176830377 -50694201 + (TA)n Simple_repeat Simple_repeat 1 28 0 1577 142 3 56 chr3 176830431 176830743 -50693835 + AluJo SINE Alu 13 312 0 34 0 0 0 chr3 176831793 176831827 -50692751 + AT_rich Low_complexity Low_complexity 1 34 0 996 136 38 0 chr3 176832373 176832557 -50692021 - MER63 DNA MER1_type -90 970 780 645 211 0 0 chr3 176832558 176832672 -50691906 + MER63 DNA MER1_type 676 789 -272 1466 206 81 24 chr3 176832681 176833064 -50691514 - MER63C DNA MER1_type -525 405 1 348 329 112 12 chr3 176833936 176834097 -50690481 - MER5B DNA MER1_type -1 177 1 2421 35 0 0 chr3 176834894 176835198 -50689380 - AluY SINE Alu 0 304 1 783 208 14 0 chr3 176837184 176837361 -50687217 + FRAM SINE Alu 1 179 0 778 323 49 66 chr3 176837792 176838325 -50686253 + L3 LINE CR1 398 921 -656 530 244 24 0 chr3 176838484 176838607 -50685971 - MER69 DNA AcHobo -1091 135 10 799 292 94 34 chr3 176838618 176838743 -50685835 - L1ME LINE L1 -356 5806 5690 898 204 30 5 chr3 176838743 176838944 -50685634 + MER3 DNA MER1_type 3 208 -1 799 292 94 34 chr3 176838944 176839352 -50685226 - L1ME LINE L1 -472 5690 5224 411 252 93 9 chr3 176839361 176839468 -50685110 + MER5B DNA MER1_type 42 157 -21 199 309 18 0 chr3 176839475 176839530 -50685048 + L3 LINE CR1 1345 1400 -177 709 309 106 0 chr3 176839538 176839774 -50684804 + MIR SINE MIR 1 261 -1 5403 244 82 54 chr3 176839834 176840219 -50684359 + L1MC4a LINE L1 4023 4396 -3412 2127 120 7 0 chr3 176840219 176840519 -50684059 + AluY SINE Alu 1 302 -9 5403 244 82 54 chr3 176840519 176841747 -50682831 + L1MC4a LINE L1 4396 5589 -2219 2042 149 30 28 chr3 176841747 176842110 -50682468 - THE1B LTR MaLR 0 364 1 5403 244 82 54 chr3 176842110 176842606 -50681972 + L1MC4a LINE L1 5589 6070 -1738 243 0 0 0 chr3 176842606 176842633 -50681945 + (CA)n Simple_repeat Simple_repeat 2 28 0 5403 244 82 54 chr3 176842633 176843092 -50681486 + L1MC4a LINE L1 6070 7076 -732 1237 121 5 0 chr3 176843103 176843301 -50681277 + L1PB1 LINE L1 2 200 -6663 * 9734 199 82 8 chr3 176843289 176848884 -50675694 + L1PB1 LINE L1 621 6867 0 244 278 0 0 chr3 176848907 176848979 -50675599 + L1ME3A LINE L1 5668 5739 -423 * 2027 227 96 31 chr3 176848957 176849663 -50674915 + L1MC4a LINE L1 7057 7808 0 189 143 86 0 chr3 176849674 176849709 -50674869 + L3 LINE CR1 1428 1465 -112 410 235 105 6 chr3 176850203 176850365 -50674213 + L1ME4a LINE L1 5944 6121 0 402 289 197 28 chr3 176850906 176851048 -50673530 + MER5A DNA MER1_type 13 189 0 29 28 0 0 chr3 176851102 176851138 -50673440 + AT_rich Low_complexity Low_complexity 1 36 0 7550 19 0 0 chr3 176852520 176853395 -50671183 + L1PA3 LINE L1 5281 6155 0 25 51 0 0 chr3 176853555 176853594 -50670984 + AT_rich Low_complexity Low_complexity 1 39 0 256 250 10 48 chr3 176854032 176854136 -50670442 + L1ME3A LINE L1 5869 5968 -202 21 0 0 0 chr3 176854993 176855014 -50669564 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 176855263 176855293 -50669285 + AT_rich Low_complexity Low_complexity 1 30 0 198 323 20 30 chr3 176856213 176856312 -50668266 + MIR3 SINE MIR 90 187 -21 23 0 0 0 chr3 176856428 176856451 -50668127 + AT_rich Low_complexity Low_complexity 1 23 0 243 326 39 31 chr3 176857745 176857874 -50666704 - MIR SINE MIR -15 247 118 375 324 130 20 chr3 176858372 176858399 -50666179 - MER102b DNA MER1_type -1103 325 302 1042 16 8 0 chr3 176858399 176858552 -50666026 - L1PA5 LINE L1 0 6154 6017 375 324 130 20 chr3 176858552 176858817 -50665761 - MER102b DNA MER1_type -1126 302 1 198 217 17 83 chr3 176858834 176858894 -50665684 + L2 LINE L2 3258 3313 0 21 0 0 0 chr3 176859248 176859269 -50665309 + AT_rich Low_complexity Low_complexity 1 21 0 387 0 0 0 chr3 176861281 176861324 -50663254 + (TG)n Simple_repeat Simple_repeat 1 43 0 308 343 32 104 chr3 176862954 176863292 -50661286 + L1M2 LINE L1 590 903 -5946 282 29 0 0 chr3 176864532 176864567 -50660011 + (GA)n Simple_repeat Simple_repeat 1 35 0 390 275 65 80 chr3 176866158 176866301 -50658277 + MIR3 SINE MIR 2 143 -65 2084 159 20 45 chr3 176866301 176866514 -50658064 - MSTD LTR MaLR -2 394 194 1644 139 6 85 chr3 176866514 176866831 -50657747 - AluJo SINE Alu -14 298 7 2084 159 20 45 chr3 176866831 176867019 -50657559 - MSTD LTR MaLR -202 194 3 230 333 15 0 chr3 176867019 176867075 -50657503 + L3b LINE CR1 1521 1577 -6 390 275 65 80 chr3 176867019 176867075 -50657503 + MIR3 SINE MIR 143 198 -10 42644 51 4 1 chr3 176867508 176872998 -50651580 - L1P2 LINE L1 -649 5506 2 27 87 0 0 chr3 176873838 176873907 -50650671 + AT_rich Low_complexity Low_complexity 1 69 0 21 0 0 0 chr3 176874504 176874525 -50650053 + AT_rich Low_complexity Low_complexity 1 21 0 253 289 202 10 chr3 176874566 176874670 -50649908 - L2 LINE L2 0 3272 3149 761 207 11 58 chr3 176875573 176875761 -50648817 + MER58A DNA MER1_type 46 224 0 38 51 0 0 chr3 176875876 176875935 -50648643 + AT_rich Low_complexity Low_complexity 1 59 0 682 265 71 10 chr3 176875947 176876143 -50648435 - MIR SINE MIR -3 259 52 349 172 78 0 chr3 176876604 176876668 -50647910 - AluJ SINE Alu -50 252 184 835 117 16 8 chr3 176876670 176876798 -50647780 - AluJ SINE Alu -179 133 5 231 203 38 0 chr3 176877166 176877245 -50647333 + GA-rich Low_complexity Low_complexity 1 82 0 407 284 80 30 chr3 176877553 176877754 -50646824 - L1MC4a LINE L1 -1884 5924 5714 637 240 73 21 chr3 176877754 176878029 -50646549 + L1M4 LINE L1 2205 2497 -3649 2160 102 3 7 chr3 176878029 176878333 -50646245 + AluSx SINE Alu 1 303 -9 637 240 73 21 chr3 176878333 176878345 -50646233 + L1M4 LINE L1 2497 2507 -3639 * 1809 195 6 0 chr3 176878336 176878659 -50645919 - L1M3 LINE L1 -358 5813 5489 1103 247 130 15 chr3 176878832 176879241 -50645337 - L1ME3A LINE L1 -13 6157 5702 717 244 100 35 chr3 176879261 176879491 -50645087 - LTR40b LTR ERVL -35 427 183 741 194 57 97 chr3 176879492 176879667 -50644911 + Tigger3b DNA MER2_type 1 168 -1063 25 0 0 0 chr3 176879727 176879752 -50644826 + AT_rich Low_complexity Low_complexity 1 25 0 5625 152 34 25 chr3 176879813 176880872 -50643706 + Tigger3b DNA MER2_type 161 1228 -3 1110 209 53 0 chr3 176880878 176881103 -50643475 - LTR40a LTR ERVL -282 237 1 701 309 113 48 chr3 176881103 176882337 -50642241 + L1M4 LINE L1 4075 5388 -758 225 152 0 22 chr3 176882417 176882463 -50642115 - MER46C DNA MER2_type -199 139 95 204 323 0 0 chr3 176882621 176882686 -50641892 - MIR SINE MIR 0 262 198 26 30 0 0 chr3 176882737 176882770 -50641808 + AT_rich Low_complexity Low_complexity 1 33 0 1854 104 52 0 chr3 176882770 176883058 -50641520 - L1PA10 LINE L1 -5 6163 5861 488 348 49 26 chr3 176883070 176883337 -50641241 + L3 LINE CR1 1280 1552 -25 189 74 0 0 chr3 176883710 176883737 -50640841 + (TC)n Simple_repeat Simple_repeat 1 27 0 21 0 0 0 chr3 176884260 176884281 -50640297 + AT_rich Low_complexity Low_complexity 1 21 0 2849 105 35 20 chr3 176884342 176884799 -50639779 + L1PB1 LINE L1 5688 6151 0 838 192 43 14 chr3 176884814 176885022 -50639556 + L1MA9 LINE L1 6099 6312 0 2196 60 40 13 chr3 176885443 176885741 -50638837 - AluY SINE Alu -5 306 1 576 275 30 0 chr3 176886595 176886762 -50637816 - MIR3 SINE MIR -14 194 23 318 221 105 0 chr3 176886898 176886984 -50637594 + MER5B DNA MER1_type 81 175 -3 * 568 170 27 18 chr3 176886984 176887093 -50637485 - MER5A DNA MER1_type -79 110 1 224 312 53 42 chr3 176887140 176887329 -50637249 + L2 LINE L2 2535 2725 -589 222 380 83 8 chr3 176887540 176887661 -50636917 + L2 LINE L2 3140 3269 -3 329 149 0 75 chr3 176887702 176887769 -50636809 - Alu SINE Alu -3 299 238 2103 113 3 0 chr3 176887798 176888091 -50636487 - AluSx SINE Alu -16 296 3 729 271 109 30 chr3 176888853 176889182 -50635396 - MLT1L LTR MaLR -108 507 153 498 189 42 0 chr3 176889414 176889509 -50635069 + MIR SINE MIR 153 251 -11 201 330 40 10 chr3 176889652 176889752 -50634826 - MIR SINE MIR 0 262 160 821 222 93 18 chr3 176889877 176890156 -50634422 - L1MC5 LINE L1 -36 7925 7626 1831 166 0 7 chr3 176890937 176891238 -50633340 - AluJo SINE Alu -13 299 1 292 348 68 19 chr3 176891761 176891968 -50632610 - MIR SINE MIR -20 242 26 1206 260 64 29 chr3 176893122 176893530 -50631048 - MLT1C LTR MaLR -1 466 45 200 296 45 45 chr3 176893563 176893651 -50630927 + MIR SINE MIR 13 100 -162 680 218 0 0 chr3 176893894 176894018 -50630560 - FLAM_A SINE Alu -7 126 3 416 360 76 21 chr3 176894029 176894357 -50630221 + L2 LINE L2 2013 2358 -956 278 404 83 32 chr3 176894412 176894571 -50630007 + L2 LINE L2 2871 3020 -252 2471 62 0 3 chr3 176894571 176894877 -50629701 - AluSp SINE Alu -8 305 1 278 404 83 32 chr3 176894877 176895091 -50629487 + L2 LINE L2 3020 3263 -9 200 222 0 0 chr3 176895379 176895424 -50629154 + A-rich Low_complexity Low_complexity 4 48 0 269 266 16 0 chr3 176896119 176896183 -50628395 + MIR SINE MIR 119 183 -79 815 188 0 0 chr3 176896662 176896795 -50627783 - FLAM_A SINE Alu 0 133 1 468 220 70 0 chr3 176897692 176897792 -50626786 - FLAM_A SINE Alu -32 110 4 337 217 280 21 chr3 176898280 176898423 -50626155 - MER5A DNA MER1_type -2 187 8 931 259 37 5 chr3 176898446 176898662 -50625916 + MER58A DNA MER1_type 2 224 0 457 244 99 0 chr3 176899206 176899337 -50625241 + MER103 DNA DNA 21 164 -2 503 317 45 25 chr3 176899503 176899702 -50624876 + MIR SINE MIR 60 262 0 204 346 144 0 chr3 176900822 176900926 -50623652 + MIR SINE MIR 90 208 -54 608 273 55 61 chr3 176900986 176901297 -50623281 + L2 LINE L2 2959 3267 -46 794 262 233 25 chr3 176901811 176902261 -50622317 + L2 LINE L2 2774 3313 0 625 227 32 32 chr3 176902564 176902749 -50621829 - MER5A DNA MER1_type 0 189 5 323 401 6 6 chr3 176903313 176903480 -50621098 + MIR3 SINE MIR 42 208 0 831 237 54 0 chr3 176903582 176903829 -50620749 + MIR SINE MIR 18 251 -11 611 277 64 34 chr3 176904042 176904277 -50620301 + L1ME1 LINE L1 5920 6161 -5 2630 280 100 25 chr3 176904809 176906435 -50618143 - L1MEd LINE L1 -2172 3957 2210 207 161 0 0 chr3 176906444 176906475 -50618103 + (TG)n Simple_repeat Simple_repeat 2 32 0 440 243 63 79 chr3 176906539 176906967 -50617611 - L1MC4 LINE L1 -87 7955 7535 365 295 14 51 chr3 176907052 176907128 -50617450 - L1MEd LINE L1 -4839 1471 1394 836 234 63 10 chr3 176907128 176907333 -50617245 + MER20 DNA MER1_type 4 219 0 365 295 14 51 chr3 176907333 176907551 -50617027 - L1MEd LINE L1 -4916 1394 1159 792 218 106 61 chr3 176907557 176907621 -50616957 - MER69 DNA AcHobo -7 2519 2459 1948 114 130 6 chr3 176907621 176907945 -50616633 + THE1B LTR MaLR 1 364 0 792 218 106 61 chr3 176907945 176908275 -50616303 - MER69 DNA AcHobo -67 2459 2107 395 299 126 43 chr3 176908276 176908394 -50616184 - L2 LINE L2 -1479 1835 1728 209 33 33 0 chr3 176908394 176908424 -50616154 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 395 299 126 43 chr3 176908424 176908583 -50615995 - L2 LINE L2 -1586 1728 1535 1590 219 95 9 chr3 176908616 176909067 -50615511 + Charlie4a DNA MER1_type 14 503 -5 1336 263 50 89 chr3 176909070 176909501 -50615077 - L2 LINE L2 -1803 1511 1114 2008 147 3 0 chr3 176909501 176909800 -50614778 + AluJb SINE Alu 1 300 -12 1336 263 50 89 chr3 176909800 176910044 -50614534 - L2 LINE L2 -2200 1114 862 280 309 95 71 chr3 176911134 176911302 -50613276 - L2 LINE L2 0 3272 3101 188 219 122 24 chr3 176911436 176911518 -50613060 - MER5A DNA MER1_type -18 171 82 385 287 28 0 chr3 176911640 176911748 -50612830 - MER91A DNA MER1_type -70 126 16 5897 52 95 0 chr3 176913429 176914205 -50610373 + L1PA3 LINE L1 5305 6154 -1 4837 84 15 1 chr3 176914205 176914879 -50609699 + L1PA13 LINE L1 5476 6163 0 244 263 175 29 chr3 176914962 176915133 -50609445 - L1ME3A LINE L1 -14 6156 5961 262 252 26 61 chr3 176915224 176915333 -50609245 - L1MC5 LINE L1 -430 7531 7426 2728 44 12 0 chr3 176915333 176915672 -50608906 + L1PA4 LINE L1 5810 6152 -3 986 306 88 36 chr3 176916005 176916722 -50607856 - L1MDa LINE L1 -4512 1568 820 242 220 0 0 chr3 176916740 176916799 -50607779 - L1MDa LINE L1 -5294 776 718 646 279 135 78 chr3 176917704 176918718 -50605860 + L1MEd LINE L1 93 1164 -5041 311 278 128 18 chr3 176918762 176919043 -50605535 + L1MEd LINE L1 1309 1620 -4776 26 64 0 0 chr3 176919168 176919215 -50605363 + AT_rich Low_complexity Low_complexity 1 47 0 308 280 156 40 chr3 176919503 176919753 -50604825 + L1MEd LINE L1 2112 2390 -4006 1636 90 8 20 chr3 176919760 176920005 -50604573 + L1PA10 LINE L1 5912 6153 -15 42 20 0 0 chr3 176920008 176920057 -50604521 + AT_rich Low_complexity Low_complexity 1 49 0 309 303 87 49 chr3 176920095 176920382 -50604196 + L1MEd LINE L1 2386 2683 -3532 180 289 247 10 chr3 176920571 176920668 -50603910 + L2 LINE L2 3186 3305 -8 21 57 0 0 chr3 176920804 176920839 -50603739 + AT_rich Low_complexity Low_complexity 1 35 0 294 139 0 0 chr3 176920943 176920986 -50603592 + tRNA-Gln-CAG tRNA tRNA 1 43 -32 318 263 50 50 chr3 176921010 176921170 -50603408 + L1MEd LINE L1 3393 3552 -2663 568 290 109 6 chr3 176921310 176921493 -50603085 - MIR SINE MIR -59 203 2 535 272 72 13 chr3 176921747 176921956 -50602622 + L1MC5 LINE L1 6684 6979 -1063 204 67 0 0 chr3 176922093 176922123 -50602455 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 13956 121 7 45 chr3 176922437 176924726 -50599852 + Tigger1 DNA MER2_type 218 2418 0 239 317 79 0 chr3 176924765 176924992 -50599586 + L1MEd LINE L1 4480 4724 -1491 280 270 17 17 chr3 176926976 176927105 -50597473 + L1M3 LINE L1 5689 5807 -361 2138 108 0 10 chr3 176928791 176929097 -50595481 + AluSx SINE Alu 1 303 -9 254 302 75 0 chr3 176929933 176930039 -50594539 + MIR SINE MIR 100 213 -49 5253 168 21 28 chr3 176930505 176932117 -50592461 + L1PA16 LINE L1 4567 6155 -11 1676 144 6 78 chr3 176933201 176933436 -50591142 + L1MB3 LINE L1 5575 5777 -406 2443 145 30 5 chr3 176933436 176933870 -50590708 - MER65A LTR ERV1 0 445 1 1676 144 6 78 chr3 176933870 176933994 -50590584 + L1MB3 LINE L1 5777 5908 -275 736 153 14 42 chr3 176934089 176934233 -50590345 - L1 LINE L1 -1122 5024 4885 1049 189 40 4 chr3 176934273 176934501 -50590077 + L1MB3 LINE L1 5946 6181 -2 3553 146 10 25 chr3 176934588 176935259 -50589319 + L1 LINE L1 4136 4796 -1350 285 360 0 0 chr3 176937056 176937145 -50587433 + MIR SINE MIR 51 139 -123 600 370 91 23 chr3 176937230 176937760 -50586818 + L2 LINE L2 2375 2940 -374 208 333 33 11 chr3 176937922 176938012 -50586566 + L2 LINE L2 3222 3313 0 254 265 69 0 chr3 176938027 176938129 -50586449 - L1M4 LINE L1 -364 5820 5712 5144 165 20 53 chr3 176939082 176939156 -50585422 - L1MC1 LINE L1 -71 6262 6187 2433 73 0 0 chr3 176939156 176939456 -50585122 - AluY SINE Alu -11 300 1 270 0 0 0 chr3 176939465 176939495 -50585083 + (TTA)n Simple_repeat Simple_repeat 2 31 0 5144 165 20 53 chr3 176939495 176939509 -50585069 - L1MC1 LINE L1 -154 6179 6166 897 142 0 8 chr3 176939509 176939643 -50584935 - FLAM_C SINE Alu 0 133 1 5144 165 20 53 chr3 176939643 176940541 -50584037 - L1MC1 LINE L1 -167 6166 5298 2293 115 0 0 chr3 176940541 176940845 -50583733 - AluSg SINE Alu -6 304 1 5144 165 20 53 chr3 176940845 176940955 -50583623 - L1MC1 LINE L1 -1035 5298 5186 195 129 0 0 chr3 176940961 176940992 -50583586 + (CATATA)n Simple_repeat Simple_repeat 1 31 0 270 300 226 32 chr3 176941530 176941840 -50582738 + L2 LINE L2 2931 3300 -13 24446 138 20 76 chr3 176942759 176947767 -50576811 - L1P LINE L1 -1422 4724 1 2410 171 40 36 chr3 176948312 176948858 -50575720 + L1M2 LINE L1 4811 5330 -970 186 71 0 0 chr3 176948858 176948886 -50575692 + (TTTA)n Simple_repeat Simple_repeat 3 30 0 2410 171 40 36 chr3 176948886 176949346 -50575232 + L1M2 LINE L1 5330 5787 -513 * 4736 147 1 1 chr3 176949344 176950128 -50574450 + L1P LINE L1 4341 5124 -1022 405 181 21 53 chr3 176950128 176950222 -50574356 - LTR41 LTR ERVL -675 98 8 1020 294 39 23 chr3 176950275 176950585 -50573993 - MLT1J2 LTR MaLR -129 321 7 2860 0 0 6 chr3 176950894 176951206 -50573372 - AluYa5 SINE Alu -1 310 1 567 189 16 8 chr3 176951806 176951928 -50572650 - MER103 DNA DNA -3 163 41 279 246 0 0 chr3 176952010 176952067 -50572511 + MIR3 SINE MIR 152 208 0 443 265 83 17 chr3 176953278 176953459 -50571119 - MLT1J LTR MaLR -212 299 107 283 173 19 19 chr3 176953417 176953469 -50571109 - LTR67 LTR ERVL -404 153 102 * 352 264 74 61 chr3 176953731 176953879 -50570699 + MER5A DNA MER1_type 37 186 -3 597 240 44 89 chr3 176953886 176954157 -50570421 - MER102b DNA MER1_type -10 331 73 762 250 5 14 chr3 176954163 176954379 -50570199 + L1M4 LINE L1 4899 5112 -1034 739 318 14 0 chr3 176954655 176954875 -50569703 - MIR SINE MIR -17 245 23 471 290 79 58 chr3 176955153 176955481 -50569097 - L3 LINE CR1 -54 1523 1189 1172 149 0 27 chr3 176955623 176955811 -50568767 + AluJo SINE Alu 1 183 -129 1319 150 0 24 chr3 176955813 176956026 -50568552 + AluJo SINE Alu 82 289 -23 196 360 11 11 chr3 176956044 176956133 -50568445 - L3 LINE CR1 -1099 478 390 1671 265 53 24 chr3 176956200 176956706 -50567872 + LTR33 LTR ERVL 1 521 0 258 95 0 0 chr3 176958494 176958536 -50566042 + (TG)n Simple_repeat Simple_repeat 2 43 0 1972 116 8 0 chr3 176958937 176959205 -50565373 + AluSg SINE Alu 16 285 -25 38 0 0 0 chr3 176959211 176959249 -50565329 + AT_rich Low_complexity Low_complexity 1 38 0 257 326 65 36 chr3 176959504 176959642 -50564936 - L3 LINE CR1 -1 1576 1435 32 43 0 0 chr3 176960825 176960871 -50563707 + AT_rich Low_complexity Low_complexity 1 46 0 24 67 0 0 chr3 176961127 176961172 -50563406 + AT_rich Low_complexity Low_complexity 1 45 0 363 319 145 6 chr3 176964617 176964783 -50559795 + L2 LINE L2 2528 2716 -598 291 260 13 13 chr3 176965456 176965533 -50559045 + MER58 DNA MER1_type 2 78 -2342 213 269 0 0 chr3 176965580 176965647 -50558931 + GA-rich Low_complexity Low_complexity 3 69 0 317 252 20 7 chr3 176965694 176965841 -50558737 + GA-rich Low_complexity Low_complexity 3 151 0 396 224 0 0 chr3 176965867 176965943 -50558635 + MER58 DNA MER1_type 2344 2419 -1 1215 184 5 5 chr3 176966044 176966250 -50558328 - AluJo SINE Alu -21 291 86 2156 52 0 2 chr3 176966710 176966989 -50557589 + L1PA4 LINE L1 5721 5995 -160 1987 134 27 0 chr3 176967451 176967749 -50556829 + AluSx SINE Alu 1 306 -6 470 296 61 0 chr3 176968186 176968318 -50556260 - MIR SINE MIR -119 143 4 2154 226 111 57 chr3 176968467 176969267 -50555311 - L1MB8 LINE L1 -194 5984 5228 243 0 0 0 chr3 176969267 176969294 -50555284 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 4240 58 4 4 chr3 176969296 176969832 -50554746 - L1PA7 LINE L1 -12 6142 5607 2154 226 111 57 chr3 176969832 176970590 -50553988 - L1MB8 LINE L1 -950 5228 4327 221 331 103 7 chr3 176971221 176971357 -50553221 + L2 LINE L2 1846 1994 -1320 194 300 114 0 chr3 176972016 176972086 -50552492 + L2 LINE L2 2764 2841 -473 301 338 26 0 chr3 176972231 176972308 -50552270 + L2 LINE L2 3164 3242 -30 303 28 0 0 chr3 176972329 176972365 -50552213 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 36 0 0 chr3 176972842 176972870 -50551708 + AT_rich Low_complexity Low_complexity 1 28 0 2034 121 0 20 chr3 176972975 176973273 -50551305 - AluSg SINE Alu -18 292 1 370 278 127 35 chr3 176973299 176973472 -50551106 + MIR SINE MIR 74 262 0 2165 107 0 0 chr3 176973592 176973873 -50550705 - AluSx SINE Alu -23 289 9 2536 48 0 0 chr3 176974315 176974609 -50549969 + AluY SINE Alu 1 294 -17 1379 94 31 0 chr3 176975106 176975297 -50549281 + MER107 DNA MER1_type 1 197 0 28 0 0 0 chr3 176975579 176975607 -50548971 + AT_rich Low_complexity Low_complexity 1 28 0 2075 131 0 0 chr3 176977564 176977855 -50546723 + AluSx SINE Alu 1 291 -21 363 44 0 0 chr3 176977857 176977902 -50546676 + (TG)n Simple_repeat Simple_repeat 2 46 0 340 284 0 0 chr3 176977902 176977990 -50546588 + L1MC4 LINE L1 6614 6701 -1341 189 0 0 0 chr3 176977990 176978011 -50546567 + (GA)n Simple_repeat Simple_repeat 2 22 0 536 260 27 7 chr3 176978140 176978286 -50546292 - LTR16C LTR ERVL -164 327 179 378 74 0 0 chr3 176979929 176979983 -50544595 + (CA)n Simple_repeat Simple_repeat 1 54 0 6409 68 48 0 chr3 176979996 176981217 -50543361 - L1PA8 LINE L1 -9 6163 4897 196 293 0 0 chr3 176981706 176981747 -50542831 - L2 LINE L2 -8 3264 3224 341 321 250 27 chr3 176982050 176982651 -50541927 - L2 LINE L2 -342 2972 2238 285 140 0 0 chr3 176983555 176983612 -50540966 + (TA)n Simple_repeat Simple_repeat 2 58 0 198 91 0 0 chr3 176984366 176984399 -50540179 + (T)n Simple_repeat Simple_repeat 1 33 0 237 278 0 42 chr3 176984399 176984471 -50540107 + MIR SINE MIR 40 108 -100 2011 229 88 27 chr3 176984662 176985333 -50539245 + HsTC2a DNA Tc2 33 744 0 280 301 97 25 chr3 176985911 176986230 -50538348 - L1ME4a LINE L1 -170 5951 5610 187 235 0 0 chr3 176987272 176987306 -50537272 + L2 LINE L2 3227 3260 -12 935 231 98 60 chr3 176987332 176987878 -50536700 + MLT2F LTR ERVL 2 598 -65 2072 128 0 7 chr3 176988291 176988587 -50535991 - AluSg SINE Alu -16 294 1 1318 231 30 83 chr3 176989153 176989624 -50534954 - MER39 LTR ERV1 -2 705 260 229 196 65 0 chr3 176989601 176989647 -50534931 - MER39B LTR ERV1 -562 91 43 * 342 281 37 37 chr3 176989739 176989874 -50534704 - L3 LINE CR1 -231 1346 1212 344 333 48 16 chr3 176989895 176990021 -50534557 - L2 LINE L2 -1 3312 3183 228 311 13 80 chr3 176990020 176990092 -50534486 - L3 LINE CR1 -392 1185 1110 * 216 0 0 0 chr3 176990092 176990116 -50534462 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1442 201 29 0 chr3 176990124 176990398 -50534180 - AluJo SINE Alu -30 282 1 228 311 13 80 chr3 176990398 176990467 -50534111 - L3 LINE CR1 -474 1103 1045 1406 111 44 9 chr3 176990798 176991023 -50533555 - L1PA11 LINE L1 0 6174 5942 23 33 0 0 chr3 176991880 176991910 -50532668 + AT_rich Low_complexity Low_complexity 1 30 0 26 104 0 0 chr3 176991986 176992082 -50532496 + AT_rich Low_complexity Low_complexity 1 96 0 201 260 55 41 chr3 176992096 176992169 -50532409 - L2 LINE L2 -1 3271 3198 406 297 159 7 chr3 176992321 176992466 -50532112 - L2 LINE L2 -557 2757 2591 228 232 30 91 chr3 176992573 176992672 -50531906 - L2 LINE L2 -1211 2103 2011 1381 219 47 30 chr3 176993352 176993717 -50530861 - MLT1A2 LTR MaLR 0 374 4 22 35 0 0 chr3 176994114 176994143 -50530435 + AT_rich Low_complexity Low_complexity 1 29 0 4799 197 60 22 chr3 176994217 176995378 -50529200 - L1MC4a LINE L1 0 7808 6604 437 319 68 32 chr3 176995731 176995979 -50528599 + L2 LINE L2 2600 2856 -458 316 330 91 11 chr3 176996233 176996409 -50528169 + L2 LINE L2 1786 1975 -1339 534 354 89 41 chr3 176996499 176997131 -50527447 - L2 LINE L2 -454 2860 2199 204 325 0 26 chr3 176997178 176997255 -50527323 + L2 LINE L2 2395 2469 -845 394 352 39 30 chr3 176998470 176998700 -50525878 - L2 LINE L2 0 3313 3082 1975 137 4 0 chr3 176998937 176999214 -50525364 + AluSx SINE Alu 1 278 -34 1199 181 125 0 chr3 176999619 176999906 -50524672 - MER33 DNA MER1_type -1 323 1 588 285 58 34 chr3 177001086 177001293 -50523285 + L2 LINE L2 3098 3309 -4 4540 58 37 3 chr3 177001495 177002096 -50522482 + L1PA8 LINE L1 5550 6170 -2 23 78 0 0 chr3 177002252 177002303 -50522275 + AT_rich Low_complexity Low_complexity 1 51 0 831 157 7 20 chr3 177002435 177002582 -50521996 - MLT1D LTR MaLR -337 168 24 2585 103 19 3 chr3 177002694 177003063 -50521515 - THE1C LTR MaLR 0 375 1 24 32 0 0 chr3 177003682 177003713 -50520865 + AT_rich Low_complexity Low_complexity 1 31 0 26 50 0 0 chr3 177003760 177003800 -50520778 + AT_rich Low_complexity Low_complexity 1 40 0 1092 227 52 52 chr3 177005541 177005986 -50518592 + LTR56 LTR ERV1 1 445 0 1017 176 38 14 chr3 177005990 177006200 -50518378 + L1M1 LINE L1 20 234 -7331 2249 117 21 35 chr3 177006255 177006630 -50517948 - THE1C LTR MaLR -3 372 3 17821 166 54 6 chr3 177006638 177010452 -50514126 + L1M1 LINE L1 395 4391 -3174 2222 171 59 36 chr3 177010452 177010980 -50513598 - MLT2A2 LTR ERVL 0 554 1 5889 203 13 42 chr3 177010980 177012938 -50511640 + L1M1 LINE L1 4387 6211 -1354 2157 262 78 54 chr3 177012943 177013775 -50510803 + MER21B LTR ERV1 1 852 -11 597 159 127 16 chr3 177013785 177013911 -50510667 + MLT1A1 LTR MaLR 226 365 0 590 268 96 0 chr3 177013911 177014077 -50510501 - L1 LINE L1 -1707 4439 4242 312 70 0 0 chr3 177014077 177014120 -50510458 + (TG)n Simple_repeat Simple_repeat 2 44 0 590 268 96 0 chr3 177014120 177014192 -50510386 - L1 LINE L1 -1904 4242 4178 * 1672 192 0 0 chr3 177014189 177014506 -50510072 - L1 LINE L1 -1052 5094 4778 1316 176 0 0 chr3 177014507 177014723 -50509855 - MLT1A1 LTR MaLR -149 216 1 3726 195 43 11 chr3 177014735 177016234 -50508344 + L1MB7 LINE L1 4447 5991 -193 1875 93 4 31 chr3 177016325 177016582 -50507996 + AluSg SINE Alu 45 294 -16 367 321 9 9 chr3 177016817 177016929 -50507649 - MLT1K LTR MaLR -341 247 136 1176 219 24 14 chr3 177017310 177017602 -50506976 - L1MD2 LINE L1 -12 6347 6053 324 188 62 0 chr3 177017603 177017667 -50506911 + MER21B LTR ERV1 1 68 -795 233 224 224 0 chr3 177017700 177017758 -50506820 + MER21B LTR ERV1 19 89 -774 3636 210 62 18 chr3 177017761 177018547 -50506031 + MER21B LTR ERV1 43 863 0 3565 175 90 13 chr3 177018548 177019254 -50505324 - L1MD2 LINE L1 -302 6057 5265 2353 104 3 0 chr3 177019254 177019563 -50505015 - AluSg SINE Alu 0 310 1 3565 175 90 13 chr3 177019563 177019747 -50504831 - L1MD2 LINE L1 -1094 5265 5097 834 181 22 16 chr3 177020134 177020316 -50504262 - MER53 DNA DNA -5 184 2 22 35 0 0 chr3 177020410 177020439 -50504139 + AT_rich Low_complexity Low_complexity 1 29 0 289 319 22 0 chr3 177020479 177020570 -50504008 - MIR3 SINE MIR -6 202 110 2529 36 0 23 chr3 177022379 177022684 -50501894 - AluY SINE Alu -13 298 1 26 0 0 0 chr3 177022791 177022817 -50501761 + AT_rich Low_complexity Low_complexity 1 26 0 454 286 162 0 chr3 177023220 177023374 -50501204 - MER5A DNA MER1_type -1 188 10 913 168 77 53 chr3 177023760 177023969 -50500609 + MER20 DNA MER1_type 6 219 0 24 67 0 0 chr3 177024687 177024732 -50499846 + AT_rich Low_complexity Low_complexity 1 45 0 2787 198 22 65 chr3 177024843 177025524 -50499054 - MER82 DNA MER2_type -1 652 1 794 283 96 34 chr3 177025561 177026074 -50498504 + L2 LINE L2 2562 3168 -145 223 309 143 16 chr3 177026359 177026485 -50498093 + L2 LINE L2 2207 2348 -966 18259 30 5 0 chr3 177026570 177029534 -50495044 - L1PA3 LINE L1 -2 6153 3167 5659 80 11 0 chr3 177029534 177030280 -50494298 - L1PA10 LINE L1 -17 6151 5398 203 323 10 30 chr3 177030492 177030591 -50493987 + L2 LINE L2 2698 2794 -520 275 312 231 56 chr3 177030746 177031015 -50493563 + L2 LINE L2 2952 3267 -5 432 278 197 12 chr3 177031044 177031303 -50493275 + L1ME4a LINE L1 5813 6119 -2 21 36 0 0 chr3 177031364 177031392 -50493186 + AT_rich Low_complexity Low_complexity 1 28 0 2227 113 0 0 chr3 177031433 177031733 -50492845 - AluSg SINE Alu -1 309 10 392 286 87 0 chr3 177032124 177032250 -50492328 - L2 LINE L2 0 3272 3136 981 284 70 88 chr3 177032416 177032727 -50491851 + L2 LINE L2 2578 2893 -420 2512 154 24 7 chr3 177032727 177033148 -50491430 - MSTA LTR MaLR 0 428 1 9152 178 25 3 chr3 177033148 177034763 -50489815 - MSTA-int LTR MaLR 0 1651 1 2596 127 14 32 chr3 177034766 177035200 -50489378 - MSTA LTR MaLR -2 426 1 981 284 70 88 chr3 177035200 177035618 -50488960 + L2 LINE L2 2894 3308 -5 21 57 0 0 chr3 177035690 177035725 -50488853 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr3 177036010 177036035 -50488543 + AT_rich Low_complexity Low_complexity 1 25 0 255 301 96 27 chr3 177037520 177037666 -50486912 + MIR SINE MIR 31 186 -76 21087 160 28 14 chr3 177088484 177096033 -50428545 - L1MA3 LINE L1 -56 7668 12 1399 256 63 29 chr3 177096052 177096643 -50427935 + L1MC4a LINE L1 5442 6052 -1756 301 304 48 8 chr3 177096730 177096855 -50427723 - MLT1L LTR MaLR -368 247 118 203 235 12 25 chr3 177097023 177097104 -50427474 + (TATAA)n Simple_repeat Simple_repeat 5 84 0 1319 194 35 25 chr3 177097109 177097476 -50427102 + L1 LINE L1 3478 3848 -2298 376 215 0 13 chr3 177097478 177097557 -50427021 + MER58B DNA MER1_type 229 306 -35 2249 61 4 4 chr3 177097559 177097865 -50426713 + AluY SINE Alu 1 306 0 873 217 106 0 chr3 177100762 177100951 -50423627 + MIR SINE MIR 5 213 -49 285 75 0 0 chr3 177100972 177101012 -50423566 + (TG)n Simple_repeat Simple_repeat 2 41 0 220 309 138 0 chr3 177101025 177101119 -50423459 - MIR SINE MIR -108 154 48 2122 125 3 0 chr3 177101250 177101547 -50423031 - AluSx SINE Alu -14 298 1 21 0 0 0 chr3 177101707 177101728 -50422850 + AT_rich Low_complexity Low_complexity 1 21 0 234 62 0 0 chr3 177101810 177101842 -50422736 + (CA)n Simple_repeat Simple_repeat 1 32 0 1000 105 23 6 chr3 177101973 177102145 -50422433 - L1P LINE L1 -737 5428 5254 247 170 0 0 chr3 177102308 177102355 -50422223 - L1M4 LINE L1 -1366 4780 4734 1912 121 24 7 chr3 177103343 177103632 -50420946 - AluSx SINE Alu -18 294 1 4357 159 39 8 chr3 177103754 177104604 -50419974 + HSMAR2 DNA Mariner 3 878 -424 1738 174 9 40 chr3 177104770 177105092 -50419486 + AluJo SINE Alu 1 312 0 2197 137 36 3 chr3 177105185 177105710 -50418868 + L1P4 LINE L1 5102 5639 -527 396 0 0 0 chr3 177105711 177105755 -50418823 + (TA)n Simple_repeat Simple_repeat 1 44 0 * 498 17 0 0 chr3 177105754 177105813 -50418765 + (GA)n Simple_repeat Simple_repeat 2 60 0 222 91 0 0 chr3 177106325 177106358 -50418220 + (CA)n Simple_repeat Simple_repeat 1 33 0 2183 114 7 0 chr3 177106746 177107043 -50417535 + AluSg SINE Alu 1 299 -11 364 313 92 26 chr3 177107216 177107411 -50417167 + MIR SINE MIR 49 256 -6 239 356 96 7 chr3 177107492 177107638 -50416940 - MIR SINE MIR -51 211 53 22 80 0 0 chr3 177107717 177107767 -50416811 + AT_rich Low_complexity Low_complexity 1 50 0 497 170 53 0 chr3 177107865 177107959 -50416619 - L1PA16 LINE L1 -9 6157 6059 578 262 30 0 chr3 177108063 177108231 -50416347 - AluSx SINE Alu -79 233 61 273 341 0 0 chr3 177108279 177108367 -50416211 + MIR3 SINE MIR 98 185 -23 5051 202 94 13 chr3 177108976 177110464 -50414114 - MER52A LTR ERV1 0 1755 113 210 304 82 98 chr3 177110866 177111050 -50413528 + L2 LINE L2 2906 3086 -186 2262 69 21 3 chr3 177111848 177112139 -50412439 + AluY SINE Alu 1 296 -15 5643 107 6 19 chr3 177112305 177113709 -50410869 - L1PA14 LINE L1 -3 6158 4734 15516 155 114 7 chr3 177113715 177116983 -50407595 - L1PA12 LINE L1 -3968 3616 1 5476 174 17 9 chr3 177117019 177118160 -50406418 - L1MC1 LINE L1 -18 6315 5174 934 233 40 26 chr3 177118167 177118395 -50406183 - MIR SINE MIR -14 248 18 318 257 79 0 chr3 177119515 177119627 -50404951 - MIR SINE MIR -62 146 38 224 295 313 0 chr3 177120831 177120943 -50403635 - L2 LINE L2 -2 3270 3124 294 236 9 62 chr3 177121347 177121459 -50403119 + MLT1E LTR MaLR 1 92 -450 * 1164 257 39 55 chr3 177121457 177121838 -50402740 + MLT1E LTR MaLR 206 580 -13 554 236 111 80 chr3 177122458 177122810 -50401768 + L2 LINE L2 2946 3308 -5 22 35 0 0 chr3 177123032 177123061 -50401517 + AT_rich Low_complexity Low_complexity 1 29 0 309 349 105 22 chr3 177124083 177124382 -50400196 + MLT1L LTR MaLR 202 525 -63 246 259 192 31 chr3 177124536 177124729 -50399849 - MIR SINE MIR -9 253 30 267 345 152 27 chr3 177125067 177125363 -50399215 - L2 LINE L2 -568 2746 2414 208 182 23 0 chr3 177126375 177126419 -50398159 + (CAA)n Simple_repeat Simple_repeat 1 45 0 2142 101 0 14 chr3 177127395 177127691 -50396887 - AluSq SINE Alu -21 292 1 1091 237 110 52 chr3 177127785 177127852 -50396726 - L1MC1 LINE L1 -1443 4703 4641 183 42 0 0 chr3 177127852 177127876 -50396702 + (CA)n Simple_repeat Simple_repeat 2 25 0 1091 237 110 52 chr3 177127876 177128370 -50396208 - L1MC1 LINE L1 -1505 4641 4109 3526 144 18 5 chr3 177128805 177129409 -50395169 - L1PA15 LINE L1 -8 6157 5546 2896 115 16 7 chr3 177129679 177130132 -50394446 + HSMAR2 DNA Mariner 846 1302 0 384 344 97 7 chr3 177130272 177130551 -50394027 + L2 LINE L2 2461 2764 -550 2412 104 0 0 chr3 177131209 177131518 -50393060 + AluSx SINE Alu 1 309 -3 180 0 0 0 chr3 177132217 177132237 -50392341 + (TTG)n Simple_repeat Simple_repeat 2 21 0 198 0 0 0 chr3 177132293 177132315 -50392263 + (CAAG)n Simple_repeat Simple_repeat 3 24 0 578 141 33 66 chr3 177133318 177133439 -50391139 - FLAM_A SINE Alu -4 138 22 24 91 0 0 chr3 177134771 177134837 -50389741 + AT_rich Low_complexity Low_complexity 1 66 0 662 195 50 19 chr3 177135001 177135160 -50389418 + MER58C DNA MER1_type 52 215 0 180 125 0 0 chr3 177136127 177136159 -50388419 + (TATG)n Simple_repeat Simple_repeat 4 35 0 25 31 0 0 chr3 177136456 177136488 -50388090 + AT_rich Low_complexity Low_complexity 1 32 0 3707 159 94 78 chr3 177137627 177138520 -50386058 - MER21A LTR ERV1 -17 914 8 523 288 57 33 chr3 177140386 177140598 -50383980 + MLT1J2 LTR MaLR 3 219 -231 254 260 55 0 chr3 177140729 177140844 -50383734 + GA-rich Low_complexity Low_complexity 1 121 0 387 0 0 0 chr3 177141149 177141192 -50383386 + (T)n Simple_repeat Simple_repeat 1 43 0 266 311 33 33 chr3 177141240 177141362 -50383216 + MLT1J2 LTR MaLR 280 401 -49 25 51 0 0 chr3 177142058 177142097 -50382481 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr3 177142483 177142507 -50382071 + AT_rich Low_complexity Low_complexity 1 24 0 2361 88 0 3 chr3 177142803 177143108 -50381470 + AluSp SINE Alu 1 304 -9 1082 167 0 0 chr3 177143122 177143290 -50381288 + FAM SINE Alu 1 168 -7 1587 150 15 11 chr3 177143335 177143595 -50380983 + AluJb SINE Alu 23 283 -29 510 261 25 8 chr3 177143720 177143839 -50380739 - MIR SINE MIR -33 229 109 37842 88 7 8 chr3 177144734 177150888 -50373690 - L1PA5 LINE L1 -1 6153 2 5375 200 59 19 chr3 177150888 177151131 -50373447 - L1 LINE L1 -1898 4248 4016 4489 58 26 16 chr3 177151131 177151712 -50372866 + LTR14C LTR ERVK 1 587 0 5375 200 59 19 chr3 177151712 177152922 -50371656 - L1 LINE L1 -2130 4016 2737 38591 73 11 2 chr3 177153834 177158971 -50365607 + L1P LINE L1 1 5184 -962 3586 138 51 0 chr3 177159086 177159658 -50364920 - L1P LINE L1 -5545 601 1 1755 89 0 30 chr3 177160277 177160512 -50364066 - AluY SINE Alu -12 299 72 258 294 54 0 chr3 177161112 177161204 -50363374 + MLT1J LTR MaLR 415 511 0 5202 142 34 17 chr3 177161388 177162268 -50362310 - MER4D LTR ERV1 -8 895 1 269 351 142 0 chr3 177162439 177162587 -50361991 - L2 LINE L2 -546 2768 2600 190 189 0 0 chr3 177163508 177163545 -50361033 - L2 LINE L2 -1 3312 3276 629 338 98 25 chr3 177164068 177164549 -50360029 - L2 LINE L2 -166 3106 2590 194 339 48 36 chr3 177165432 177165597 -50358981 + L2 LINE L2 1782 1948 -1366 534 302 64 46 chr3 177166302 177166749 -50357829 - L1ME LINE L1 -729 5441 4981 24 67 0 0 chr3 177166967 177167012 -50357566 + AT_rich Low_complexity Low_complexity 1 45 0 274 214 36 43 chr3 177167040 177167180 -50357398 - L1ME LINE L1 -1475 4671 4533 995 186 131 21 chr3 177167953 177168189 -50356389 - MLT1A1 LTR MaLR 0 365 104 812 166 24 30 chr3 177168194 177168363 -50356215 - MER4D LTR ERV1 0 903 736 1909 179 75 34 chr3 177168364 177168805 -50355773 - LTR2B LTR ERV1 0 490 32 2536 177 17 44 chr3 177168821 177169426 -50355152 - MER4D LTR ERV1 -160 619 54 1433 157 71 25 chr3 177169400 177169681 -50354897 - MER49 LTR ERV1 -629 294 1 * 440 209 12 0 chr3 177169709 177169795 -50354783 - MLT1A1 LTR MaLR -278 87 1 254 320 43 30 chr3 177169862 177170093 -50354485 - L1P LINE L1 -2323 3823 3590 530 310 100 44 chr3 177170314 177170351 -50354227 - L1ME LINE L1 -2923 3223 3190 2124 112 13 0 chr3 177170351 177170655 -50353923 - AluSx SINE Alu -12 300 1 530 310 100 44 chr3 177170655 177171166 -50353412 - L1ME LINE L1 -2956 3190 2645 665 327 123 40 chr3 177171314 177171892 -50352686 + L2 LINE L2 2336 2961 -353 306 261 162 18 chr3 177172020 177172131 -50352447 + L2 LINE L2 3186 3312 -1 2870 252 93 53 chr3 177172256 177173590 -50350988 + L1MEc LINE L1 37 1423 -4973 224 68 0 45 chr3 177173731 177173775 -50350803 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 2057 111 0 7 chr3 177173778 177174057 -50350521 - AluSg1 SINE Alu -32 277 1 25 0 0 0 chr3 177174615 177174640 -50349938 + AT_rich Low_complexity Low_complexity 1 25 0 510 296 47 24 chr3 177175467 177175680 -50348898 - LTR33 LTR ERVL 0 521 304 302 292 137 19 chr3 177175720 177175881 -50348697 - MIR SINE MIR -55 207 28 309 326 20 0 chr3 177175919 177176017 -50348561 - L2 LINE L2 -14 3299 3200 21 36 0 0 chr3 177179549 177179577 -50345001 + AT_rich Low_complexity Low_complexity 1 28 0 239 270 157 9 chr3 177179936 177180051 -50344527 + MIR3 SINE MIR 11 142 -66 204 273 39 39 chr3 177180567 177180644 -50343934 + MIR SINE MIR 186 262 0 2148 131 0 0 chr3 177181489 177181786 -50342792 + AluSq SINE Alu 1 297 -16 2039 125 50 0 chr3 177181824 177182121 -50342457 + AluSx SINE Alu 1 312 0 2082 132 0 0 chr3 177183711 177184000 -50340578 + AluSq SINE Alu 1 289 -24 614 240 6 0 chr3 177184000 177184171 -50340407 + (TA)n Simple_repeat Simple_repeat 1 172 0 256 158 0 119 chr3 177184201 177184302 -50340276 - L1MC4 LINE L1 -1340 6702 6614 330 125 28 14 chr3 177184303 177184375 -50340203 + (TA)n Simple_repeat Simple_repeat 2 74 0 247 280 0 0 chr3 177185019 177185069 -50339509 + L2 LINE L2 3136 3185 -87 21 0 0 0 chr3 177185539 177185560 -50339018 + AT_rich Low_complexity Low_complexity 1 21 0 519 252 25 8 chr3 177185718 177185837 -50338741 - MIR SINE MIR -33 229 109 7096 52 7 0 chr3 177186732 177188050 -50336528 - L1PA5 LINE L1 -1 6153 4829 18396 38 0 0 chr3 177188050 177190311 -50334267 + L1PA5 LINE L1 2569 4830 -1316 2757 10 0 0 chr3 177190414 177190714 -50333864 + AluYa5 SINE Alu 1 300 -11 502 329 45 9 chr3 177190877 177191125 -50333453 + MIR SINE MIR 5 261 -1 5808 121 35 51 chr3 177191865 177192737 -50331841 - L1MA1 LINE L1 -47 6255 5424 2245 114 0 13 chr3 177192737 177193053 -50331525 + AluSx SINE Alu 1 312 0 5808 121 35 51 chr3 177193053 177193889 -50330689 - L1MA1 LINE L1 -878 5424 4576 228 325 38 12 chr3 177195530 177195610 -50328968 + L2 LINE L2 3006 3087 -185 28 29 0 0 chr3 177198105 177198140 -50326438 + AT_rich Low_complexity Low_complexity 1 35 0 520 149 67 0 chr3 177198767 177198901 -50325677 - MER96B DNA MER1_type? -243 174 32 2314 67 0 7 chr3 177199076 177199358 -50325220 + AluSq SINE Alu 17 296 -17 330 312 65 27 chr3 177200529 177200715 -50323863 + MIR SINE MIR 25 217 -45 2051 104 3 39 chr3 177202156 177202464 -50322114 + AluSx SINE Alu 1 297 -15 1863 142 3 31 chr3 177202668 177202957 -50321621 - AluSx SINE Alu -29 283 3 249 233 12 70 chr3 177203319 177203405 -50321173 + MER112 DNA MER1_type 1 81 -179 225 196 0 0 chr3 177203541 177203592 -50320986 + (CTATT)n Simple_repeat Simple_repeat 1 51 0 23 33 0 0 chr3 177203727 177203757 -50320821 + AT_rich Low_complexity Low_complexity 1 30 0 2304 106 0 0 chr3 177204232 177204534 -50320044 - AluSc SINE Alu -7 302 1 183 162 0 0 chr3 177204826 177204863 -50319715 + (AATAG)n Simple_repeat Simple_repeat 1 37 0 985 306 33 53 chr3 177204941 177205336 -50319242 - MLT1K LTR MaLR -139 449 63 199 316 0 40 chr3 177205369 177205445 -50319133 + MIR3 SINE MIR 99 171 -37 326 258 57 8 chr3 177205504 177205628 -50318950 + L1MC4 LINE L1 7912 8041 -1 8432 177 102 58 chr3 177205659 177207206 -50317372 + L1MC1 LINE L1 20 1699 -4727 2003 149 9 26 chr3 177207206 177207549 -50317029 + MER1B DNA MER1_type 1 337 0 8432 177 102 58 chr3 177207549 177208246 -50316332 + L1MC1 LINE L1 1699 2364 -4062 1599 170 24 28 chr3 177208252 177208540 -50316038 + AluJo SINE Alu 18 304 -8 33194 97 10 36 chr3 177208583 177214701 -50309877 + L1PA7 LINE L1 199 6154 0 2323 274 14 10 chr3 177214691 177215482 -50309096 + L1MC1 LINE L1 2381 3133 -3293 * 1306 156 0 10 chr3 177215530 177215729 -50308849 - AluJo SINE Alu -33 279 83 8190 205 43 31 chr3 177215731 177217144 -50307434 + L1MC1 LINE L1 3148 4542 -2071 1706 178 0 24 chr3 177217144 177217442 -50307136 + AluJb SINE Alu 1 291 -21 8190 205 43 31 chr3 177217442 177219443 -50305135 + L1MC1 LINE L1 4542 6602 -11 24 32 0 0 chr3 177219601 177219632 -50304946 + AT_rich Low_complexity Low_complexity 1 31 0 1938 151 0 13 chr3 177221337 177221642 -50302936 + AluSx SINE Alu 1 301 -11 269 279 0 0 chr3 177221813 177222749 -50301829 + L2 LINE L2 3205 3272 0 * 4021 139 44 98 chr3 177221873 177223357 -50301221 - pTR5 LTR ERV1 0 2606 1524 204 289 0 0 chr3 177223484 177223529 -50301049 + L2 LINE L2 3214 3258 -14 1533 223 13 35 chr3 177223608 177223981 -50300597 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr3 177225835 177225857 -50298721 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 177226183 177226204 -50298374 + AT_rich Low_complexity Low_complexity 1 21 0 31 82 0 0 chr3 177226389 177226462 -50298116 + AT_rich Low_complexity Low_complexity 1 73 0 31 26 0 0 chr3 177226493 177226531 -50298047 + AT_rich Low_complexity Low_complexity 1 38 0 624 263 134 13 chr3 177226815 177227039 -50297539 - MIR SINE MIR 0 262 12 1783 146 179 8 chr3 177227285 177227649 -50296929 - MSTA LTR MaLR -2 426 1 416 284 39 24 chr3 177227815 177227942 -50296636 + L2 LINE L2 3143 3271 -1 2151 140 0 0 chr3 177227950 177228258 -50296320 + AluSx SINE Alu 1 308 -4 10148 83 22 0 chr3 177228416 177230621 -50293957 + L1PA7 LINE L1 3881 6149 -5 23 54 0 0 chr3 177230963 177231000 -50293578 + AT_rich Low_complexity Low_complexity 1 37 0 1907 119 113 33 chr3 177231393 177231730 -50292848 - THE1B LTR MaLR 0 364 1 755 266 103 9 chr3 177231840 177232073 -50292505 + MIR SINE MIR 2 256 -6 266 0 0 29 chr3 177233374 177233409 -50291169 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 35 0 0 chr3 177234050 177234079 -50290499 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr3 177234113 177234141 -50290437 + AT_rich Low_complexity Low_complexity 1 28 0 520 323 125 0 chr3 177235299 177235531 -50289047 - MIR SINE MIR -1 261 1 2475 78 21 18 chr3 177236206 177236747 -50287831 - L1PA7 LINE L1 -606 5548 4999 4431 65 8 33 chr3 177236747 177237359 -50287219 + L1PA7 LINE L1 5555 6152 -2 303 243 0 27 chr3 177237496 177237570 -50287008 + L2 LINE L2 3242 3313 0 8069 209 96 54 chr3 177237673 177239091 -50285487 + L1MCa LINE L1 6 1363 -5063 2519 43 7 0 chr3 177239091 177239391 -50285187 + AluY SINE Alu 1 302 -9 8069 209 96 54 chr3 177239391 177240219 -50284359 + L1MCa LINE L1 1363 2155 -4271 2206 117 3 0 chr3 177240219 177240517 -50284061 + AluSx SINE Alu 1 299 -13 8069 209 96 54 chr3 177240517 177241478 -50283100 + L1MCa LINE L1 2155 3341 -3085 * 14161 183 21 5 chr3 177241463 177244681 -50279897 + L1M1 LINE L1 2362 5634 -671 * 24315 26 0 0 chr3 177244648 177247544 -50277034 + L1HS LINE L1 2211 5106 -1040 6246 14 0 1 chr3 177247547 177248257 -50276321 + L1HS LINE L1 5346 6054 -101 1587 80 18 44 chr3 177248823 177249098 -50275480 + L1PA5 LINE L1 5884 6151 -3 180 241 74 0 chr3 177249125 177249179 -50275399 + MIR SINE MIR 151 208 -54 22 35 0 0 chr3 177249179 177249208 -50275370 + AT_rich Low_complexity Low_complexity 1 29 0 232 301 168 12 chr3 177251751 177251924 -50272654 - MIR SINE MIR -10 252 53 442 325 67 71 chr3 177252060 177252556 -50272022 + MLT1K LTR MaLR 87 580 -8 324 259 60 0 chr3 177252642 177252758 -50271820 + L1M4 LINE L1 5195 5317 -829 23 68 0 0 chr3 177252758 177252802 -50271776 + AT_rich Low_complexity Low_complexity 1 44 0 2710 152 34 19 chr3 177252802 177253330 -50271248 - L1MA7 LINE L1 -8 6283 5748 1027 206 125 9 chr3 177253383 177253824 -50270754 - L1M4 LINE L1 -350 5824 5319 22 0 0 0 chr3 177253932 177253954 -50270624 + AT_rich Low_complexity Low_complexity 1 22 0 21298 56 11 2 chr3 177254131 177257678 -50266900 - L1PA7 LINE L1 -18 6136 2563 4102 68 11 0 chr3 177257678 177258475 -50266103 + L1P2 LINE L1 4835 5637 -517 15198 52 7 16 chr3 177258594 177260597 -50263981 + L1PA3 LINE L1 3123 5106 -1040 3824 108 39 2 chr3 177260600 177261239 -50263339 + L1PA3 LINE L1 5346 6008 -147 10453 65 1 2 chr3 177261513 177262892 -50261686 - L1P LINE L1 -1901 4245 2869 313 262 165 0 chr3 177262982 177263085 -50261493 - MER103 DNA DNA -13 153 34 23 0 0 0 chr3 177263377 177263400 -50261178 + AT_rich Low_complexity Low_complexity 1 23 0 400 260 10 0 chr3 177263484 177263580 -50260998 - MER94 DNA DNA -37 97 1 11168 69 7 0 chr3 177264067 177265974 -50258604 + L1P2 LINE L1 3884 5804 -350 1489 288 73 17 chr3 177266324 177267022 -50257556 - L1MEc LINE L1 -5623 773 37 306 261 162 18 chr3 177267147 177267258 -50257320 - L2 LINE L2 -1 3312 3186 604 322 128 45 chr3 177267386 177267964 -50256614 - L2 LINE L2 -353 2961 2336 440 323 70 38 chr3 177268112 177268555 -50256023 + L1M4 LINE L1 2645 3101 -3045 6674 53 26 20 chr3 177268763 177269942 -50254636 + L1PA7 LINE L1 4964 6152 -2 303 243 0 27 chr3 177270079 177270153 -50254425 + L2 LINE L2 3242 3313 0 492 167 28 28 chr3 177270256 177270364 -50254214 + L1MCa LINE L1 6 113 -6313 5306 89 17 11 chr3 177270487 177271442 -50253136 + L1P3 LINE L1 4583 5548 -606 2312 257 65 39 chr3 177271864 177272888 -50251690 - L1M4 LINE L1 -946 5842 4792 330 312 65 27 chr3 177273076 177273262 -50251316 - MIR SINE MIR -45 217 25 1352 131 5 40 chr3 177274305 177274527 -50250051 - AluSx SINE Alu -98 214 1 3165 234 38 8 chr3 177274528 177275685 -50248893 - L1M4 LINE L1 -3658 3130 1936 * 5167 246 65 12 chr3 177275683 177276904 -50247674 - L1M4 LINE L1 -5450 1339 54 240 162 235 0 chr3 177276960 177277028 -50247550 - L1M4 LINE L1 -6704 85 2 20250 44 1 0 chr3 177277053 177280337 -50244241 - L1PA5 LINE L1 -8 6146 2869 314 255 167 0 chr3 177280427 177280529 -50244049 - MER103 DNA DNA -14 152 34 23 0 0 0 chr3 177280821 177280844 -50243734 + AT_rich Low_complexity Low_complexity 1 23 0 400 260 10 0 chr3 177280928 177281024 -50243554 - MER94 DNA DNA -37 97 1 350 375 64 21 chr3 177282314 177282594 -50241984 + L2 LINE L2 2446 2737 -577 653 170 73 24 chr3 177282644 177282809 -50241769 - HsTC2 DNA Tc2 -48 1850 1678 398 219 146 0 chr3 177282812 177282935 -50241643 - HsTC2 DNA Tc2 -1757 141 1 198 409 0 0 chr3 177282984 177283077 -50241501 + L2 LINE L2 2766 2858 -456 1900 137 4 0 chr3 177283510 177283809 -50240769 + AluSc SINE Alu 1 300 0 1000 117 0 0 chr3 177284149 177284286 -50240292 + AluSp/q SINE Alu 159 295 -18 243 0 0 0 chr3 177284603 177284630 -50239948 + (T)n Simple_repeat Simple_repeat 1 27 0 2525 57 28 3 chr3 177284630 177284948 -50239630 - LTR17 LTR ERV1 -454 326 1 2021 98 3 17 chr3 177284948 177285244 -50239334 - HERV17 LTR ERV1 0 8626 8335 281 77 0 0 chr3 177285234 177285273 -50239305 - HERV17 LTR ERV1 -1078 7548 7510 * 4968 44 0 0 chr3 177285266 177285859 -50238719 - HERV17 LTR ERV1 -2607 6019 5427 2246 109 0 10 chr3 177286191 177286502 -50238076 - AluSg SINE Alu -2 308 1 2172 129 3 0 chr3 177286505 177286807 -50237771 - AluSx SINE Alu -8 304 2 1834 160 17 42 chr3 177286937 177287293 -50237285 + MER7A DNA MER2_type 1 345 -1 190 186 0 34 chr3 177288024 177288083 -50236495 + T-rich Low_complexity Low_complexity 2 58 0 2136 125 10 0 chr3 177289016 177289320 -50235258 + AluSx SINE Alu 1 307 -5 301 221 26 0 chr3 177289337 177289414 -50235164 - L1MC4 LINE L1 -1351 6691 6613 296 284 224 0 chr3 177289473 177289607 -50234971 + MIR SINE MIR 7 170 -92 2405 174 25 50 chr3 177291476 177291999 -50232579 + LTR54 LTR ERV1 1 510 0 354 303 183 36 chr3 177292033 177292284 -50232294 - L2 LINE L2 0 3272 2985 304 253 42 42 chr3 177293299 177293394 -50231184 - L2 LINE L2 0 3272 3178 38 0 0 0 chr3 177293437 177293475 -50231103 + AT_rich Low_complexity Low_complexity 1 38 0 235 225 99 0 chr3 177293512 177293583 -50230995 + MIR SINE MIR 57 134 -128 356 315 36 83 chr3 177293734 177294010 -50230568 + L2 LINE L2 2956 3218 -54 324 295 42 52 chr3 177294124 177294317 -50230261 - MIR SINE MIR -52 210 20 225 108 0 0 chr3 177295087 177295124 -50229454 + (TG)n Simple_repeat Simple_repeat 2 38 0 354 294 87 0 chr3 177295172 177295298 -50229280 - MIR SINE MIR -14 248 112 1736 188 42 26 chr3 177295615 177295999 -50228579 + MLT1B LTR MaLR 1 390 0 301 256 124 23 chr3 177296086 177296215 -50228363 - L1MC4 LINE L1 -2049 5759 5618 584 218 14 139 chr3 177296949 177297014 -50227564 - MER5A DNA MER1_type 0 189 117 1731 127 58 14 chr3 177297014 177297328 -50227250 + AluSg SINE Alu 1 310 0 584 218 14 139 chr3 177297328 177297478 -50227100 - MER5A DNA MER1_type -71 118 1 208 182 45 0 chr3 177297542 177297586 -50226992 - MER5A DNA MER1_type -77 112 67 692 165 0 39 chr3 177297586 177297713 -50226865 - FRAM SINE Alu -18 158 37 230 139 0 0 chr3 177297714 177297750 -50226828 - MER5A DNA MER1_type -150 39 4 237 195 0 0 chr3 177298738 177298779 -50225799 - MIR3 SINE MIR 0 208 168 32 0 0 0 chr3 177299642 177299674 -50224904 + AT_rich Low_complexity Low_complexity 1 32 0 268 321 92 46 chr3 177299687 177299818 -50224760 - L2 LINE L2 -2 3270 3134 326 287 246 47 chr3 177299827 177300144 -50224434 - L2 LINE L2 0 3313 2934 33 43 0 0 chr3 177300909 177300956 -50223622 + AT_rich Low_complexity Low_complexity 1 47 0 261 234 0 0 chr3 177301008 177301072 -50223506 + GA-rich Low_complexity Low_complexity 1 64 0 1513 158 47 32 chr3 177302309 177302629 -50221949 - AluJb SINE Alu 0 324 1 226 320 51 74 chr3 177302664 177302839 -50221739 + L2 LINE L2 2885 3055 -217 21 0 0 0 chr3 177303181 177303202 -50221376 + AT_rich Low_complexity Low_complexity 1 21 0 338 324 180 30 chr3 177303470 177304031 -50220547 + L2 LINE L2 1606 2250 -1064 261 314 0 12 chr3 177304396 177304482 -50220096 + CT-rich Low_complexity Low_complexity 1 85 0 2292 120 126 8 chr3 177304634 177305016 -50219562 + MSTA LTR MaLR 1 427 -1 927 106 0 7 chr3 177305017 177305158 -50219420 + MSTA-int LTR MaLR 1 140 -1511 * 6843 140 29 20 chr3 177305147 177306269 -50218309 + MSTA-int LTR MaLR 449 1580 0 2015 153 125 13 chr3 177306269 177306654 -50217924 + MSTA LTR MaLR 1 428 0 1100 284 50 38 chr3 177306899 177307327 -50217251 + MLT1H LTR MaLR 3 479 -70 1027 180 11 11 chr3 177307328 177307511 -50217067 - MER20 DNA MER1_type 0 219 37 30 45 0 0 chr3 177308798 177308842 -50215736 + AT_rich Low_complexity Low_complexity 1 44 0 447 337 66 7 chr3 177309232 177309586 -50214992 + MLT1I LTR MaLR 1 407 -2 265 255 31 41 chr3 177310738 177310836 -50213742 + MER117 DNA MER1_type 36 132 -65 21 57 0 0 chr3 177310925 177310960 -50213618 + AT_rich Low_complexity Low_complexity 1 35 0 315 159 0 0 chr3 177311027 177311090 -50213488 - L1MA5A LINE L1 0 6939 6877 1231 170 5 0 chr3 177311094 177311312 -50213266 - L1MA5A LINE L1 -417 6522 6304 355 214 155 0 chr3 177311313 177311397 -50213181 - LTR47A LTR ERVL -86 366 270 5681 169 11 10 chr3 177311397 177312838 -50211740 - L1MA5A LINE L1 -622 6317 4875 * 37822 90 7 10 chr3 177312837 177319036 -50205542 - L1PA6 LINE L1 0 6154 2 7766 218 39 37 chr3 177319036 177319279 -50205299 - L1MA5A LINE L1 -1898 4890 4649 4489 58 26 16 chr3 177319279 177319860 -50204718 + LTR14C LTR ERVK 1 587 0 7766 218 39 37 chr3 177319860 177322193 -50202385 - L1MA5A LINE L1 -2139 4649 2651 2281 111 0 0 chr3 177322193 177322490 -50202088 - AluSg SINE Alu -12 298 2 7766 218 39 37 chr3 177322490 177325147 -50199431 - L1MA5A LINE L1 -4137 2651 1 333 359 35 7 chr3 177325458 177325603 -50198975 + MIR SINE MIR 47 195 -67 26 30 0 0 chr3 177325899 177325932 -50198646 + AT_rich Low_complexity Low_complexity 1 33 0 2208 167 52 10 chr3 177326049 177326456 -50198122 - MSTB1 LTR MaLR -2 430 7 2511 55 0 10 chr3 177328043 177328353 -50196225 + AluY SINE Alu 1 307 -4 232 171 341 8 chr3 177328971 177329094 -50195484 - Charlie7 DNA MER1_type -16 2596 2433 1253 189 149 13 chr3 177329123 177329424 -50195154 + MER2 DNA MER2_type 1 342 -2 441 240 45 62 chr3 177329608 177329787 -50194791 - MER5B DNA MER1_type -2 176 1 391 327 19 31 chr3 177330252 177330443 -50194135 - MIR SINE MIR -56 206 19 194 358 97 30 chr3 177331463 177331597 -50192981 + L2 LINE L2 3168 3310 -3 2831 13 0 0 chr3 177333302 177333613 -50190965 + AluYa5 SINE Alu 1 311 0 1953 120 3 38 chr3 177333987 177334303 -50190275 + AluSx SINE Alu 9 314 0 207 301 0 48 chr3 177334419 177334502 -50190076 + MIR SINE MIR 105 183 -79 814 224 204 4 chr3 177335249 177335499 -50189079 + MER5C DNA MER1_type 11 310 -14 870 213 60 86 chr3 177335525 177335942 -50188636 - HsTC2 DNA Tc2 -1 1897 1316 1258 300 6 3 chr3 177335980 177336337 -50188241 - HsTC2 DNA Tc2 -1412 486 129 739 206 79 24 chr3 177336408 177336573 -50188005 - FAM SINE Alu -1 174 1 305 217 206 60 chr3 177336851 177337035 -50187543 - MIR SINE MIR -51 211 1 1713 213 19 19 chr3 177338298 177338664 -50185914 + MLT2D LTR ERVL 1 366 -48 418 126 7 49 chr3 177338746 177338889 -50185689 + (TA)n Simple_repeat Simple_repeat 2 138 0 302 114 0 0 chr3 177338907 177338951 -50185627 + MLT2D LTR ERVL 421 464 0 502 296 138 19 chr3 177338958 177339336 -50185242 + Charlie7 DNA MER1_type 251 673 -1939 686 249 32 14 chr3 177339515 177339732 -50184846 + L1ME3A LINE L1 5945 6165 -5 886 264 34 17 chr3 177339875 177340167 -50184411 - L1MEc LINE L1 -2394 5171 4875 2461 239 69 26 chr3 177340260 177341592 -50182986 - L1MEc LINE L1 -3027 4538 3176 2188 147 111 10 chr3 177341594 177341983 -50182595 + MSTA LTR MaLR 1 428 0 8755 172 37 18 chr3 177341983 177343586 -50180992 + MSTA-int LTR MaLR 1 1635 -16 2315 121 113 15 chr3 177343601 177343991 -50180587 + MSTA LTR MaLR 1 428 0 756 212 40 13 chr3 177343994 177344223 -50180355 - L1MEc LINE L1 -4479 3153 2856 7782 208 31 23 chr3 177344427 177346526 -50178052 - L1MC1 LINE L1 -435 6178 4053 1442 179 127 7 chr3 177346526 177346833 -50177745 - MER7A DNA MER2_type -2 344 3 7782 208 31 23 chr3 177346833 177347588 -50176990 - L1MC1 LINE L1 -2560 4053 3305 5569 216 4 5 chr3 177347578 177347606 -50176972 + L1P LINE L1 1681 1708 -4438 * 658 140 9 0 chr3 177347606 177347720 -50176858 - L1PA13 LINE L1 -4 6159 6045 5569 216 4 5 chr3 177347720 177348870 -50175708 + L1P LINE L1 1708 2858 -3288 2118 106 9 26 chr3 177348871 177349219 -50175359 - L1MA3 LINE L1 -68 6237 5896 875 142 0 0 chr3 177349220 177349368 -50175210 - L1MA3 LINE L1 -565 5740 5593 33216 93 10 36 chr3 177349392 177355508 -50169070 - L1HS LINE L1 -3 6152 199 1599 170 24 28 chr3 177355551 177355839 -50168739 - AluJo SINE Alu -8 304 18 8460 177 102 58 chr3 177355845 177356542 -50168036 - L1MC1 LINE L1 -4062 2364 1699 2128 134 6 26 chr3 177356542 177356886 -50167692 - MER1B DNA MER1_type 0 337 1 8460 177 102 58 chr3 177356886 177358433 -50166145 - L1MC1 LINE L1 -4727 1699 20 326 258 57 8 chr3 177358464 177358588 -50165990 - L1MC4 LINE L1 -1 8041 7912 199 316 0 40 chr3 177358647 177358723 -50165855 - MIR3 SINE MIR -37 171 99 1011 304 33 53 chr3 177358756 177359151 -50165427 + MLT1K LTR MaLR 63 449 -139 183 162 0 0 chr3 177359229 177359266 -50165312 + (CTATT)n Simple_repeat Simple_repeat 1 37 0 2291 109 0 0 chr3 177359558 177359860 -50164718 + AluSc SINE Alu 1 302 -7 23 33 0 0 chr3 177360335 177360365 -50164213 + AT_rich Low_complexity Low_complexity 1 30 0 225 196 0 0 chr3 177360500 177360551 -50164027 + (AATAG)n Simple_repeat Simple_repeat 1 51 0 249 233 12 70 chr3 177360687 177360773 -50163805 - MER112 DNA MER1_type -179 81 1 1863 142 3 31 chr3 177361135 177361424 -50163154 + AluSx SINE Alu 3 283 -29 2051 104 3 39 chr3 177361628 177361936 -50162642 - AluSx SINE Alu -15 297 1 330 312 65 27 chr3 177363377 177363563 -50161015 - MIR SINE MIR -45 217 25 22 35 0 0 chr3 177363957 177363986 -50160592 + AT_rich Low_complexity Low_complexity 1 29 0 2314 67 0 7 chr3 177364733 177365015 -50159563 - AluSq SINE Alu -17 296 17 520 149 67 0 chr3 177365190 177365324 -50159254 + MER96B DNA MER1_type? 32 174 -243 28 29 0 0 chr3 177365951 177365986 -50158592 + AT_rich Low_complexity Low_complexity 1 35 0 2217 81 17 10 chr3 177366762 177367059 -50157519 + AluSq SINE Alu 1 299 -14 496 313 122 51 chr3 177367443 177367976 -50156602 + L2 LINE L2 1194 1764 -1550 6254 213 44 31 chr3 177368252 177368751 -50155827 - L1 LINE L1 -1290 4856 4365 1883 113 11 14 chr3 177368751 177369026 -50155552 - AluSq SINE Alu -16 297 24 6254 213 44 31 chr3 177369026 177369080 -50155498 - L1 LINE L1 -1781 4365 4313 2116 115 0 11 chr3 177369080 177369391 -50155187 - AluSx SINE Alu 0 308 1 6254 213 44 31 chr3 177369391 177370624 -50153954 - L1 LINE L1 -1833 4313 2901 2350 103 0 0 chr3 177370624 177370935 -50153643 - AluY SINE Alu 0 311 1 6254 213 44 31 chr3 177370935 177371167 -50153411 - L1 LINE L1 -3245 2901 2674 6883 66 5 3 chr3 177371282 177372179 -50152399 + L1PA5 LINE L1 5254 6151 -3 180 241 74 0 chr3 177372206 177372260 -50152318 + MIR SINE MIR 151 208 -54 22 35 0 0 chr3 177372260 177372289 -50152289 + AT_rich Low_complexity Low_complexity 1 29 0 319 307 10 0 chr3 177374382 177374483 -50150095 - L1MEd LINE L1 -4501 2039 1938 260 362 66 20 chr3 177375590 177375742 -50148836 + MIR SINE MIR 34 192 -70 12765 178 19 24 chr3 177376663 177378957 -50145621 + L1M1 LINE L1 6 2290 -5275 2168 78 0 3 chr3 177378957 177379250 -50145328 - L1PA8 LINE L1 -9 6163 5872 12765 178 19 24 chr3 177379250 177379452 -50145126 + L1M1 LINE L1 2290 2491 -5074 10587 158 20 38 chr3 177379469 177380483 -50144095 + L1M1 LINE L1 2705 3736 -3829 2120 134 0 3 chr3 177380483 177380796 -50143782 + AluSx SINE Alu 1 312 0 10587 158 20 38 chr3 177380796 177383110 -50141468 + L1M1 LINE L1 3736 6091 -1474 2331 137 28 8 chr3 177383110 177383467 -50141111 + THE1B LTR MaLR 1 364 0 11526 97 3 19 chr3 177383467 177385072 -50139506 + THE1B-int LTR MaLR 1 1580 0 2508 117 5 19 chr3 177385072 177385441 -50139137 + THE1B LTR MaLR 1 364 0 10587 158 20 38 chr3 177385441 177385482 -50139096 + L1M1 LINE L1 5981 6021 -1544 384 240 54 0 chr3 177385481 177385610 -50138968 - L1M4 LINE L1 -921 5225 5090 * 423 287 129 24 chr3 177385873 177386468 -50138110 - L1ME3 LINE L1 -222 5948 5289 545 184 0 0 chr3 177386489 177386587 -50137991 - AluSg/x SINE Alu -11 298 201 228 294 20 0 chr3 177386833 177386935 -50137643 - L1P LINE L1 -1143 5003 4900 613 286 76 80 chr3 177387046 177387650 -50136928 - L1MEd LINE L1 -5029 1501 900 2120 141 0 0 chr3 177387975 177388274 -50136304 - AluSx SINE Alu -13 299 1 2012 143 47 25 chr3 177389454 177389819 -50134759 + THE1C LTR MaLR 1 373 -2 2184 210 65 11 chr3 177389874 177390398 -50134180 - MER44D DNA MER2_type -1 604 181 2040 137 24 0 chr3 177390814 177391107 -50133471 + AluSx SINE Alu 1 300 -12 1084 199 80 57 chr3 177391159 177391495 -50133083 + MER2 DNA MER2_type 1 344 0 303 277 54 9 chr3 177391495 177391600 -50132978 - MIR SINE MIR -105 157 45 2166 142 13 26 chr3 177392431 177392811 -50131767 - THE1C LTR MaLR 0 375 1 9410 113 30 41 chr3 177392811 177393916 -50130662 - THE1C-int LTR MaLR 0 1580 464 3748 101 0 8 chr3 177393916 177394431 -50130147 - MER9 LTR ERVK 0 511 1 9410 113 30 41 chr3 177394431 177394511 -50130067 - THE1C-int LTR MaLR -1116 464 385 2097 133 20 0 chr3 177394511 177394811 -50129767 + AluSq SINE Alu 1 306 -7 9410 113 30 41 chr3 177394811 177395222 -50129356 - THE1C-int LTR MaLR -1195 385 1 2172 149 5 26 chr3 177395222 177395605 -50128973 - THE1C LTR MaLR 0 375 1 30 45 0 0 chr3 177395720 177395764 -50128814 + AT_rich Low_complexity Low_complexity 1 44 0 928 218 84 3 chr3 177396200 177396498 -50128080 - MER33 DNA MER1_type -1 323 2 2308 160 43 5 chr3 177396616 177397053 -50127525 - MER31A LTR ERV1 -27 458 5 1445 104 15 116 chr3 177397778 177398046 -50126532 - AluJb SINE Alu -15 297 57 2312 164 62 38 chr3 177398222 177398509 -50126069 - MLT2B1 LTR ERVL -8 512 233 2339 80 0 13 chr3 177398509 177398808 -50125770 - AluY SINE Alu -16 295 1 2312 164 62 38 chr3 177398808 177398898 -50125680 - MLT2B1 LTR ERVL -287 233 147 2368 88 0 3 chr3 177398898 177399205 -50125373 - AluSc SINE Alu -3 306 1 2312 164 62 38 chr3 177399205 177399325 -50125253 - MLT2B1 LTR ERVL -373 147 2 1018 210 137 27 chr3 177399959 177400288 -50124290 + MLT1A1 LTR MaLR 1 365 0 1566 194 25 66 chr3 177400524 177400695 -50123883 + MLT1B LTR MaLR 1 178 -212 2330 110 0 0 chr3 177400695 177400996 -50123582 + AluSx SINE Alu 1 301 -11 1566 194 25 66 chr3 177400996 177401231 -50123347 + MLT1B LTR MaLR 178 390 0 202 283 17 0 chr3 177401431 177401491 -50123087 + GA-rich Low_complexity Low_complexity 4 64 0 467 312 91 13 chr3 177401687 177401918 -50122660 - MIR SINE MIR -11 251 3 2612 102 8 5 chr3 177402072 177402444 -50122134 + THE1C LTR MaLR 3 375 0 4308 101 59 12 chr3 177402444 177403120 -50121458 + THE1C-int LTR MaLR 1 708 -872 29 28 0 0 chr3 177403179 177403215 -50121363 + AT_rich Low_complexity Low_complexity 1 36 0 5409 166 33 10 chr3 177404137 177405993 -50118585 - L1MA5A LINE L1 -4 6293 4402 479 250 0 8 chr3 177406024 177406148 -50118430 - AluSp/q SINE Alu -16 297 175 2831 115 37 51 chr3 177406277 177406608 -50117970 - MER4B LTR ERV1 -71 539 205 186 43 0 0 chr3 177406608 177406631 -50117947 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1804 139 75 0 chr3 177406633 177406899 -50117679 - AluSg SINE Alu -24 286 1 2831 115 37 51 chr3 177406899 177407111 -50117467 - MER4B LTR ERV1 -406 204 1 273 241 0 0 chr3 177407322 177407380 -50117198 - MLT1G LTR MaLR -197 393 336 366 235 105 37 chr3 177407452 177407614 -50116964 - MLT1G LTR MaLR -289 301 129 391 222 91 20 chr3 177407865 177407964 -50116614 + L2 LINE L2 3203 3308 -5 * 476 280 85 47 chr3 177407947 177408058 -50116520 - MIR SINE MIR -10 252 147 2202 109 0 0 chr3 177408058 177408380 -50116198 - AluSq SINE Alu 0 323 2 476 280 85 47 chr3 177408380 177408478 -50116100 - MIR SINE MIR -115 147 34 552 369 125 20 chr3 177408543 177409145 -50115433 + L2 LINE L2 2086 2750 -564 347 317 114 6 chr3 177409189 177409356 -50115222 + L2 LINE L2 3127 3311 -2 749 95 0 0 chr3 177409827 177409922 -50114656 - AluSg/x SINE Alu -119 193 99 1759 172 67 123 chr3 177410134 177410836 -50113742 + MER4A LTR ERV1 2 664 0 304 335 88 26 chr3 177411698 177411892 -50112686 + MIR3 SINE MIR 1 206 -2 1771 131 86 43 chr3 177412091 177412465 -50112113 - MLT1B LTR MaLR 0 390 1 46 33 0 0 chr3 177412474 177412534 -50112044 + AT_rich Low_complexity Low_complexity 1 60 0 814 160 0 8 chr3 177412537 177412662 -50111916 - FLAM_C SINE Alu -19 124 1 2045 147 7 0 chr3 177413237 177413537 -50111041 + AluSx SINE Alu 1 302 -10 262 268 27 90 chr3 177414055 177414212 -50110366 - MIR SINE MIR -65 143 19 203 306 56 14 chr3 177414657 177414729 -50109849 + L2 LINE L2 3229 3303 -10 925 261 197 45 chr3 177414759 177415352 -50109226 + L2 LINE L2 2617 3304 -9 2207 116 3 0 chr3 177415365 177415657 -50108921 + AluSg SINE Alu 1 293 -17 302 224 12 0 chr3 177415807 177415892 -50108686 + GA-rich Low_complexity Low_complexity 1 86 0 2220 113 13 0 chr3 177415916 177416218 -50108360 + AluSx SINE Alu 1 306 -6 651 191 12 41 chr3 177416264 177416438 -50108140 - MLT1A1 LTR MaLR 0 374 227 782 165 105 51 chr3 177416454 177416840 -50107738 - LTR7 LTR ERV1 0 450 1 690 203 0 44 chr3 177416840 177416870 -50107708 - MLT1A1 LTR MaLR -203 162 132 1754 181 3 57 chr3 177416870 177417256 -50107322 - MLT1A1 LTR MaLR 0 365 1 690 203 0 44 chr3 177417256 177417395 -50107183 - MLT1A1 LTR MaLR -233 132 1 3605 148 67 95 chr3 177418040 177418921 -50105657 + MER21A LTR ERV1 11 866 -65 2156 113 24 0 chr3 177418921 177419213 -50105365 + AluSq SINE Alu 1 299 -14 3605 148 67 95 chr3 177419213 177419253 -50105325 + MER21A LTR ERV1 866 906 -25 341 288 48 8 chr3 177420088 177420213 -50104365 + L3 LINE CR1 1161 1290 -287 26 0 0 0 chr3 177421405 177421431 -50103147 + AT_rich Low_complexity Low_complexity 1 26 0 234 0 0 0 chr3 177422314 177422340 -50102238 + (T)n Simple_repeat Simple_repeat 1 26 0 321 89 0 0 chr3 177423311 177423356 -50101222 + (GGA)n Simple_repeat Simple_repeat 2 46 0 192 152 0 0 chr3 177423457 177423490 -50101088 + A-rich Low_complexity Low_complexity 1 33 0 189 94 0 0 chr3 177424113 177424145 -50100433 + (TTTTTG)n Simple_repeat Simple_repeat 1 32 0 * 348 88 0 0 chr3 177424115 177424172 -50100406 + (T)n Simple_repeat Simple_repeat 1 57 0 277 67 0 0 chr3 177425330 177425375 -50099203 + Alu SINE Alu 257 301 0 24 96 0 0 chr3 177427910 177427983 -50096595 + AT_rich Low_complexity Low_complexity 1 73 0 1001 273 74 22 chr3 177428042 177428445 -50096133 + MLT1J2 LTR MaLR 2 425 -25 1081 185 33 0 chr3 177428462 177428673 -50095905 - MER20 DNA MER1_type 0 219 2 833 287 60 29 chr3 177428724 177429058 -50095520 - Tigger8 DNA MER2_type -4 662 307 1994 62 114 0 chr3 177429058 177429330 -50095248 - AluY SINE Alu -8 303 1 833 287 60 29 chr3 177429330 177429479 -50095099 - Tigger8 DNA MER2_type -359 307 164 197 343 46 56 chr3 177429822 177429930 -50094648 - L2 LINE L2 -53 3219 3113 33 25 0 0 chr3 177430153 177430193 -50094385 + AT_rich Low_complexity Low_complexity 1 40 0 1388 177 74 32 chr3 177431293 177431576 -50093002 - AluJb SINE Alu -11 301 7 2290 108 0 3 chr3 177431615 177431922 -50092656 - AluSq SINE Alu -6 307 2 287 293 48 26 chr3 177431927 177432238 -50092340 + L1M4 LINE L1 2856 3173 -2973 3233 72 44 42 chr3 177432290 177432875 -50091703 + L1P5 LINE L1 5200 5790 -361 307 247 49 12 chr3 177432876 177432957 -50091621 - L1MC4 LINE L1 -1344 6698 6615 194 191 21 0 chr3 177432962 177433009 -50091569 + (TA)n Simple_repeat Simple_repeat 2 49 0 251 235 47 0 chr3 177433009 177433094 -50091484 - L1MC4 LINE L1 -1339 6703 6615 2307 93 70 0 chr3 177433128 177433471 -50091107 + L1PB1 LINE L1 5783 6149 -2 687 318 47 52 chr3 177433754 177434220 -50090358 + L1M4 LINE L1 4128 4591 -1555 207 244 0 0 chr3 177434244 177434285 -50090293 + CT-rich Low_complexity Low_complexity 2 42 0 1369 141 14 70 chr3 177434435 177434719 -50089859 - AluSx SINE Alu -44 268 1 2274 67 0 3 chr3 177434869 177435169 -50089409 - L1PA7 LINE L1 0 6154 5856 290 202 20 30 chr3 177435170 177435269 -50089309 + L1ME2 LINE L1 6044 6141 -23 209 229 12 24 chr3 177435919 177436002 -50088576 + (TTTG)n Simple_repeat Simple_repeat 3 84 0 485 239 92 0 chr3 177436984 177437114 -50087464 - MIR SINE MIR -19 243 102 972 249 54 58 chr3 177437116 177437578 -50087000 - LTR37B LTR ERV1 0 468 9 230 290 75 11 chr3 177437584 177437677 -50086901 - MIR SINE MIR -158 104 6 222 253 95 84 chr3 177438326 177438421 -50086157 + MIR3 SINE MIR 87 182 -26 1274 181 34 42 chr3 177438687 177439034 -50085544 - MER45R DNA AcHobo 0 1581 1236 1052 70 116 35 chr3 177439034 177439206 -50085372 - L1PA11 LINE L1 0 6174 5989 1274 181 34 42 chr3 177439206 177439244 -50085334 - MER45R DNA AcHobo -345 1236 1199 285 315 221 0 chr3 177439443 177439656 -50084922 - MIR SINE MIR -1 261 2 1205 201 126 7 chr3 177439739 177440008 -50084570 - AluSx SINE Alu -11 301 1 1214 163 119 31 chr3 177440092 177440450 -50084128 + MSTA LTR MaLR 1 428 0 5616 238 80 27 chr3 177440664 177440994 -50083584 - L1M4c LINE L1 -3432 3212 2901 2269 100 0 23 chr3 177440994 177441295 -50083283 + AluY SINE Alu 1 294 -17 5616 238 80 27 chr3 177441295 177442279 -50082299 - L1M4c LINE L1 -3743 2901 1970 1902 171 10 0 chr3 177442279 177442649 -50081929 - AluSx SINE Alu 0 312 1 5616 238 80 27 chr3 177442649 177444288 -50080290 - L1M4c LINE L1 -4674 1970 2 31 26 0 0 chr3 177444859 177444897 -50079681 + AT_rich Low_complexity Low_complexity 1 38 0 378 250 145 20 chr3 177446233 177446385 -50078193 - MIR SINE MIR -71 191 21 373 285 81 0 chr3 177447076 177447199 -50077379 + MIR3 SINE MIR 24 156 -52 28 61 0 0 chr3 177447252 177447301 -50077277 + AT_rich Low_complexity Low_complexity 1 49 0 545 332 40 22 chr3 177447321 177447544 -50077034 - MIR SINE MIR -18 244 18 323 231 116 98 chr3 177449027 177449214 -50075364 - MIR SINE MIR -54 208 21 643 158 108 0 chr3 177449874 177449994 -50074584 + FLAM_C SINE Alu 1 133 0 1891 246 52 23 chr3 177449994 177450644 -50073934 + L1MC4a LINE L1 5296 5964 -1844 234 274 183 5 chr3 177450690 177450887 -50073691 + L1MC4a LINE L1 6098 6329 -1479 352 202 99 121 chr3 177451217 177451495 -50073083 + L1MC5 LINE L1 7226 7475 -486 2335 98 3 0 chr3 177451495 177451792 -50072786 + AluSc SINE Alu 1 298 -11 352 202 99 121 chr3 177451792 177451868 -50072710 + L1MC5 LINE L1 7475 7551 -410 1828 175 81 28 chr3 177451941 177452375 -50072203 + MSTB2 LTR MaLR 1 457 0 307 322 63 21 chr3 177452544 177452687 -50071891 + L1MC5 LINE L1 7768 7916 -45 403 204 106 45 chr3 177452761 177452893 -50071685 - MER5A DNA MER1_type -49 140 1 909 216 22 5 chr3 177452902 177453087 -50071491 - MER5A DNA MER1_type -1 188 1 630 246 46 10 chr3 177453392 177453587 -50070991 - MER63A DNA MER1_type -8 202 1 740 149 71 0 chr3 177454009 177454163 -50070415 - L1MA8 LINE L1 -2 6289 6125 826 209 0 7 chr3 177454174 177454322 -50070256 + FAM SINE Alu 12 158 -27 183 42 0 0 chr3 177454324 177454348 -50070230 + (CAA)n Simple_repeat Simple_repeat 2 25 0 3032 144 15 15 chr3 177454348 177454884 -50069694 - L1MA8 LINE L1 -158 6133 5598 1895 150 0 0 chr3 177455193 177455467 -50069111 - AluSx SINE Alu -19 293 20 2016 287 9 27 chr3 177455470 177456624 -50067954 + HERVH LTR ERV1 3362 4432 -2299 346 155 80 30 chr3 177457000 177457105 -50067473 + HERVH LTR ERV1 6543 7659 -31 21 0 0 0 chr3 177457126 177457147 -50067431 + AT_rich Low_complexity Low_complexity 1 21 0 1427 186 51 92 chr3 177457155 177457624 -50066954 + LTR7 LTR ERV1 1 450 0 1133 178 4 25 chr3 177457631 177457906 -50066672 - L1 LINE L1 -1265 5597 5329 1896 124 33 7 chr3 177457913 177458220 -50066358 - MER51B LTR ERV1 0 377 63 499 82 68 285 chr3 177458212 177458419 -50066159 - MER51A LTR ERV1 -215 162 1 * 4606 186 37 44 chr3 177458420 177459370 -50065208 - L1 LINE L1 -1538 5324 4382 213 65 0 0 chr3 177459370 177459401 -50065177 + (TTG)n Simple_repeat Simple_repeat 2 32 0 4606 186 37 44 chr3 177459401 177459602 -50064976 - L1 LINE L1 -2480 4382 4181 2545 84 126 17 chr3 177459602 177460006 -50064572 + LTR7 LTR ERV1 1 448 -2 2485 128 7 2 chr3 177460008 177460413 -50064165 + HERVH LTR ERV1 1 407 -7306 7855 102 3 5 chr3 177460555 177462578 -50062000 + HERVH LTR ERV1 3198 5233 -1858 1340 136 0 0 chr3 177462579 177462799 -50061779 + HERVH LTR ERV1 5600 5819 -1894 2280 88 48 13 chr3 177462799 177463176 -50061402 + HERVH LTR ERV1 7324 7713 0 2671 77 126 20 chr3 177463176 177463581 -50060997 + LTR7 LTR ERV1 1 448 -2 12037 137 82 21 chr3 177463583 177464706 -50059872 - L1PBa LINE L1 -2677 4185 3132 2092 125 30 0 chr3 177464706 177465002 -50059576 - AluSq SINE Alu -8 305 1 12037 137 82 21 chr3 177465002 177467229 -50057349 - L1PBa LINE L1 -3730 3132 636 1133 152 5 0 chr3 177467231 177467429 -50057149 - L1PBa LINE L1 -6663 200 2 188 316 66 0 chr3 177467588 177467664 -50056914 + MIR SINE MIR 65 145 -63 201 354 79 37 chr3 177467697 177467861 -50056717 + MER5A DNA MER1_type 17 187 -2 1806 142 63 41 chr3 177468067 177468434 -50056144 - THE1C LTR MaLR 0 375 1 5407 117 32 11 chr3 177470744 177471710 -50052868 - L1PB3 LINE L1 0 6154 5173 266 216 0 0 chr3 177471976 177472027 -50052551 + MIR SINE MIR 201 251 -11 641 263 39 52 chr3 177472971 177473203 -50051375 - MIR SINE MIR -31 231 3 207 0 0 0 chr3 177473903 177473926 -50050652 + (GTGTG)n Simple_repeat Simple_repeat 1 23 0 2083 120 121 9 chr3 177474767 177475149 -50049429 - MSTA LTR MaLR 0 428 7 980 171 57 0 chr3 177475276 177475451 -50049127 + MER5A DNA MER1_type 5 189 0 2372 205 49 2 chr3 177475451 177475943 -50048635 + MLT2B3 LTR ERVL 1 515 -39 255 179 0 0 chr3 177475976 177476000 -50048578 + MLT2B3 LTR ERVL 458 481 -73 363 44 0 0 chr3 177476000 177476045 -50048533 + (TCCA)n Simple_repeat Simple_repeat 2 46 0 255 179 0 0 chr3 177476045 177476083 -50048495 + MLT2B3 LTR ERVL 480 554 0 334 253 0 21 chr3 177477483 177477578 -50047000 - Charlie8 DNA MER1_type -2221 196 104 24 0 0 0 chr3 177477592 177477616 -50046962 + AT_rich Low_complexity Low_complexity 1 24 0 1245 294 74 40 chr3 177478019 177478775 -50045803 - L2 LINE L2 -8 3305 2528 1412 201 23 26 chr3 177478817 177479125 -50045453 - AluJo SINE Alu -1 311 5 2561 199 58 60 chr3 177479130 177479686 -50044892 - L1MD3 LINE L1 -24 7971 7415 695 184 0 0 chr3 177479686 177479811 -50044767 - MLT1F1 LTR MaLR -442 125 1 2561 199 58 60 chr3 177479811 177480431 -50044147 - L1MD3 LINE L1 -580 7415 6674 2349 160 60 52 chr3 177480431 177480931 -50043647 - MLT1D LTR MaLR 0 505 2 2561 199 58 60 chr3 177480931 177480992 -50043586 - L1MD3 LINE L1 -1321 6674 6614 317 140 37 37 chr3 177480994 177481101 -50043477 + (TTATA)n Simple_repeat Simple_repeat 3 109 0 644 269 124 35 chr3 177481126 177481409 -50043169 - L2 LINE L2 -771 2543 2236 905 298 24 17 chr3 177481483 177481775 -50042803 - L2 LINE L2 -958 2356 2063 2249 125 0 3 chr3 177481806 177482109 -50042469 + AluSg SINE Alu 1 302 -8 2413 183 30 67 chr3 177483176 177483711 -50040867 - MLT2B2 LTR ERVL 0 515 1 27092 160 55 16 chr3 177483711 177487406 -50037172 - ERVL-B2 LTR ERVL -7 5757 2206 14538 143 55 13 chr3 177487406 177487564 -50037014 + Tigger2 DNA MER2_type 1 151 -2567 2088 132 3 7 chr3 177487564 177487867 -50036711 + AluSx SINE Alu 3 304 -8 14538 143 55 13 chr3 177487867 177488549 -50036029 + Tigger2 DNA MER2_type 151 803 -1915 2276 101 3 0 chr3 177488549 177488846 -50035732 + AluSp SINE Alu 1 298 -15 14538 143 55 13 chr3 177488846 177490611 -50033967 + Tigger2 DNA MER2_type 803 2717 -1 27092 160 55 16 chr3 177490611 177491983 -50032595 - ERVL-B2 LTR ERVL -3558 2206 495 730 249 90 33 chr3 177492012 177492257 -50032321 - ERVL-B2 LTR ERVL -5502 262 4 2357 205 19 85 chr3 177492260 177492307 -50032271 - MLT2B3 LTR ERVL 0 554 505 317 24 24 0 chr3 177492307 177492349 -50032229 + (CA)n Simple_repeat Simple_repeat 2 44 0 2357 205 19 85 chr3 177492349 177492892 -50031686 - MLT2B3 LTR ERVL -49 505 3 504 32 0 0 chr3 177492919 177492981 -50031597 + (TG)n Simple_repeat Simple_repeat 1 62 0 303 93 0 0 chr3 177492981 177493024 -50031554 + (GA)n Simple_repeat Simple_repeat 2 44 0 655 189 0 0 chr3 177493880 177494007 -50030571 + MER103 DNA DNA 2 128 -38 252 59 0 0 chr3 177494036 177494070 -50030508 + (TG)n Simple_repeat Simple_repeat 2 35 0 425 281 29 47 chr3 177494118 177494289 -50030289 + MIR3 SINE MIR 20 187 -21 282 164 0 0 chr3 177496612 177496667 -50027911 + CT-rich Low_complexity Low_complexity 1 55 0 201 178 0 0 chr3 177496666 177496711 -50027867 + (CA)n Simple_repeat Simple_repeat 1 45 0 * 266 167 17 0 chr3 177496988 177497048 -50027530 + GA-rich Low_complexity Low_complexity 3 63 0 246 187 355 9 chr3 177497221 177497328 -50027250 + MLT1E1 LTR MaLR 439 582 -72 15696 204 38 18 chr3 177497333 177503971 -50020607 + L1PA15 LINE L1 1 6814 -2 374 289 39 102 chr3 177505866 177506230 -50018348 - MER102b DNA MER1_type 0 341 1 1136 61 0 0 chr3 177506282 177506429 -50018149 - L1PA6 LINE L1 0 6154 6008 183 156 0 0 chr3 177506702 177506734 -50017844 + (TATG)n Simple_repeat Simple_repeat 4 35 0 247 152 0 0 chr3 177506734 177506780 -50017798 + L1MC4 LINE L1 6658 6703 -1339 231 114 0 0 chr3 177506782 177506817 -50017761 + (TA)n Simple_repeat Simple_repeat 2 36 0 835 244 81 65 chr3 177507259 177507739 -50016839 - MLT1G3 LTR MaLR 0 542 44 1543 83 9 0 chr3 177507739 177507969 -50016609 - L1MA5A LINE L1 -3 6294 6063 835 244 81 65 chr3 177507969 177508014 -50016564 - MLT1G3 LTR MaLR -498 44 1 23 0 0 0 chr3 177508353 177508376 -50016202 + AT_rich Low_complexity Low_complexity 1 23 0 2194 204 35 17 chr3 177509039 177509519 -50015059 - MLT1D LTR MaLR -16 489 1 637 289 43 49 chr3 177509527 177509876 -50014702 + MLT1K LTR MaLR 210 556 -32 617 230 22 66 chr3 177510435 177510661 -50013917 + MLT1H LTR MaLR 92 307 -242 340 302 52 0 chr3 177510701 177510797 -50013781 + MLT1H LTR MaLR 447 547 -48 225 339 89 40 chr3 177510990 177511114 -50013464 + MER5A DNA MER1_type 1 130 -59 496 317 117 52 chr3 177511498 177511975 -50012603 + L1MC4a LINE L1 4890 5397 -749 21321 166 28 43 chr3 177511988 177517318 -50007260 + L1PA10 LINE L1 10 5366 -1117 406 19 19 0 chr3 177517318 177517371 -50007207 + THE1C LTR MaLR 1 54 -321 21321 166 28 43 chr3 177517371 177518472 -50006106 + L1PA10 LINE L1 5366 6482 -1 553 251 178 0 chr3 177518460 177518651 -50005927 + L1MC4a LINE L1 5376 5600 -2208 * 3678 107 11 0 chr3 177518653 177519194 -50005384 + MER41A LTR ERV1 1 547 -7 705 281 105 13 chr3 177519194 177519500 -50005078 + L1MC4a LINE L1 5604 5937 -1871 501 146 24 0 chr3 177519535 177519617 -50004961 + L1PA12 LINE L1 6083 6166 -2 21 36 0 0 chr3 177521049 177521077 -50003501 + AT_rich Low_complexity Low_complexity 1 28 0 717 236 28 0 chr3 177521077 177521221 -50003357 - FRAM SINE Alu -16 150 3 1422 168 0 0 chr3 177521254 177521474 -50003104 - AluJo SINE Alu -92 220 1 2999 49 0 0 chr3 177521784 177522154 -50002424 + L1PA8 LINE L1 5793 6162 -10 233 269 0 0 chr3 177522874 177522926 -50001652 - L2 LINE L2 0 3272 3221 2284 112 14 0 chr3 177523018 177523313 -50001265 - AluSx SINE Alu -13 299 1 380 261 272 2 chr3 177523670 177523936 -50000642 - Charlie8 DNA MER1_type -1003 1414 1 577 169 51 8 chr3 177524135 177524253 -50000325 + MIR SINE MIR 85 207 -55 221 95 0 24 chr3 177524759 177524801 -49999777 + (TTA)n Simple_repeat Simple_repeat 3 43 0 2360 91 0 0 chr3 177525021 177525319 -49999259 - AluSg SINE Alu -12 298 1 595 258 50 16 chr3 177526246 177526428 -49998150 - MIR SINE MIR -64 198 11 7844 12 1 0 chr3 177527500 177528487 -49996091 + L1PA2 LINE L1 5168 6155 0 837 160 0 0 chr3 177528536 177528667 -49995911 + FLAM_C SINE Alu 6 136 -7 988 249 32 55 chr3 177528861 177529262 -49995316 + HAL1 LINE L1 758 1149 -1358 1943 140 43 53 chr3 177529263 177529657 -49994921 - MLT1B LTR MaLR 0 390 1 815 217 6 28 chr3 177529689 177529742 -49994836 + AluJb SINE Alu 136 189 -123 3172 94 18 2 chr3 177529742 177530200 -49994378 + MER4C LTR ERV1 1 465 0 815 217 6 28 chr3 177530200 177530326 -49994252 + AluJb SINE Alu 189 311 -1 1563 250 47 37 chr3 177530326 177530438 -49994140 + HAL1 LINE L1 1163 1272 -1235 243 0 0 0 chr3 177530438 177530465 -49994113 + (GAA)n Simple_repeat Simple_repeat 2 28 0 1563 250 47 37 chr3 177530465 177530925 -49993653 + HAL1 LINE L1 1272 1741 -766 395 301 120 0 chr3 177530937 177531070 -49993508 - MER5B DNA MER1_type -1 177 29 817 317 43 3 chr3 177531112 177531440 -49993138 + HAL1 LINE L1 1777 2117 -390 656 246 133 38 chr3 177531453 177531746 -49992832 + HAL1 LINE L1 2187 2507 0 280 43 21 21 chr3 177532153 177532200 -49992378 + (TA)n Simple_repeat Simple_repeat 2 48 0 347 344 127 34 chr3 177532330 177532923 -49991655 - L2 LINE L2 -632 2682 2035 767 190 7 0 chr3 177533098 177533235 -49991343 - FLAM_C SINE Alu -4 139 2 447 301 42 21 chr3 177533284 177533477 -49991101 - L2 LINE L2 -1895 1419 1223 2124 127 0 10 chr3 177533552 177533859 -49990719 + AluSq SINE Alu 1 304 -9 612 253 59 77 chr3 177534118 177534474 -49990104 + MER110 LTR ERV1 38 350 -127 2330 86 13 0 chr3 177534480 177534782 -49989796 + AluY SINE Alu 1 306 -5 412 280 75 0 chr3 177536910 177537017 -49987561 + L2 LINE L2 3198 3312 -1 1908 130 139 56 chr3 177537867 177538133 -49986445 - MLT1C LTR MaLR 0 467 150 2261 93 0 3 chr3 177538133 177538424 -49986154 - AluSg SINE Alu -20 290 1 1908 130 139 56 chr3 177538424 177538588 -49985990 - MLT1C LTR MaLR -317 150 1 217 305 127 46 chr3 177538825 177539004 -49985574 + MIR SINE MIR 41 244 -18 199 305 17 0 chr3 177539414 177539473 -49985105 - L2 LINE L2 -6 3307 3248 419 248 40 0 chr3 177540026 177540127 -49984451 - MIR3 SINE MIR -17 191 87 21 36 0 0 chr3 177540191 177540219 -49984359 + AT_rich Low_complexity Low_complexity 1 28 0 222 254 75 0 chr3 177542246 177542313 -49982265 - MIR SINE MIR -72 136 65 303 325 101 50 chr3 177542749 177542918 -49981660 + MLT1J2 LTR MaLR 104 263 -187 1826 150 18 0 chr3 177542918 177543204 -49981374 + AluJb SINE Alu 5 295 -17 303 325 101 50 chr3 177543204 177543351 -49981227 + MLT1J2 LTR MaLR 263 436 -14 400 238 166 26 chr3 177543767 177543918 -49980660 - MLT1J LTR MaLR -35 476 305 507 256 90 8 chr3 177544017 177544150 -49980428 - MLT1J LTR MaLR -361 150 7 208 377 29 0 chr3 177545882 177545951 -49978627 - L2 LINE L2 -37 3235 3165 1847 194 25 6 chr3 177546376 177546732 -49977846 - MLT1A1 LTR MaLR -2 363 1 415 292 0 0 chr3 177546753 177546842 -49977736 - MER91B DNA MER1_type -3 187 99 352 250 40 30 chr3 177547070 177547170 -49977408 + MER63 DNA MER1_type 730 1056 -6 1740 205 37 57 chr3 177548032 177548540 -49976038 - MLT1D LTR MaLR -7 498 1 2045 116 26 3 chr3 177548730 177549033 -49975545 + AluSx SINE Alu 3 312 0 195 274 0 16 chr3 177549387 177549449 -49975129 - MIR SINE MIR -84 178 118 180 333 0 0 chr3 177550432 177550486 -49974092 + L2 LINE L2 3215 3268 -4 2285 102 0 0 chr3 177550621 177550916 -49973662 - AluY SINE Alu -16 295 1 357 329 40 86 chr3 177550981 177551104 -49973474 + MIR SINE MIR 25 135 -127 2086 107 55 0 chr3 177551104 177551395 -49973183 + AluSg SINE Alu 1 307 -3 357 329 40 86 chr3 177551395 177551493 -49973085 + MIR SINE MIR 135 236 -26 410 229 64 21 chr3 177552788 177552928 -49971650 - L1ME4a LINE L1 -15 6106 5961 1910 160 6 13 chr3 177553027 177553339 -49971239 - AluJo SINE Alu -2 310 1 306 303 50 8 chr3 177554718 177554837 -49969741 - MIR3 SINE MIR -48 160 37 1576 230 60 7 chr3 177555656 177556086 -49968492 + L1ME3A LINE L1 5698 6150 -20 38 22 0 0 chr3 177556804 177556849 -49967729 + AT_rich Low_complexity Low_complexity 1 45 0 202 260 130 0 chr3 177557856 177557933 -49966645 + MIR SINE MIR 8 94 -168 500 295 123 33 chr3 177558586 177559086 -49965492 + L2 LINE L2 2656 3215 -98 1736 153 53 9 chr3 177559094 177559414 -49965164 - MER2 DNA MER2_type -8 337 4 275 271 0 0 chr3 177559420 177559479 -49965099 + L2 LINE L2 3178 3236 -36 680 196 15 9 chr3 177560354 177560494 -49964084 + MLT1A2 LTR MaLR 190 459 -46 21 0 0 0 chr3 177560792 177560813 -49963765 + AT_rich Low_complexity Low_complexity 1 21 0 1956 155 0 3 chr3 177561194 177561485 -49963093 - AluJb SINE Alu -22 290 1 27 73 0 0 chr3 177562474 177562529 -49962049 + AT_rich Low_complexity Low_complexity 1 55 0 24 32 0 0 chr3 177563468 177563499 -49961079 + AT_rich Low_complexity Low_complexity 1 31 0 495 0 0 0 chr3 177563647 177563702 -49960876 + (CA)n Simple_repeat Simple_repeat 1 55 0 412 240 190 13 chr3 177564037 177564206 -49960372 - MIR SINE MIR -49 213 19 288 77 0 0 chr3 177564426 177564465 -49960113 + (ATG)n Simple_repeat Simple_repeat 2 40 0 194 330 71 27 chr3 177564991 177565103 -49959475 - L3 LINE CR1 -165 1412 1296 236 255 0 0 chr3 177566133 177566184 -49958394 + L2 LINE L2 3222 3272 0 210 324 113 64 chr3 177566405 177566609 -49957969 + L3b LINE CR1 1278 1491 -92 194 294 202 18 chr3 177566686 177566795 -49957783 - L2 LINE L2 -10 3262 3134 248 139 23 23 chr3 177566941 177566984 -49957594 + MER5B DNA MER1_type 1 43 -135 2389 235 104 31 chr3 177567000 177567683 -49956895 + L1MEc LINE L1 38 782 -5614 2100 132 3 0 chr3 177567683 177567972 -49956606 + AluSx SINE Alu 1 290 -22 2389 235 104 31 chr3 177567972 177568036 -49956542 + L1MEc LINE L1 782 840 -5556 254 358 53 53 chr3 177568099 177568493 -49956085 + L2 LINE L2 150 543 -2771 289 247 39 0 chr3 177568562 177568639 -49955939 + L2 LINE L2 3234 3313 0 477 308 70 22 chr3 177570106 177570291 -49954287 + MIR SINE MIR 5 198 -64 288 106 128 0 chr3 177571198 177571245 -49953333 - FLAM_A SINE Alu -74 59 7 253 143 54 18 chr3 177571881 177571937 -49952641 + L2 LINE L2 3215 3272 0 202 341 123 52 chr3 177572063 177572599 -49951979 + L2 LINE L2 2305 2878 -436 24 0 0 0 chr3 177572777 177572801 -49951777 + AT_rich Low_complexity Low_complexity 1 24 0 1807 175 3 7 chr3 177573864 177574161 -49950417 - AluJb SINE Alu -10 302 7 2393 106 3 0 chr3 177574986 177575297 -49949281 - AluSq SINE Alu -1 312 1 21 0 0 0 chr3 177577545 177577566 -49947012 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr3 177579239 177579266 -49945312 + AT_rich Low_complexity Low_complexity 1 27 0 353 268 18 36 chr3 177582383 177582495 -49942083 + L2 LINE L2 3177 3286 -27 219 69 0 0 chr3 177582848 177582877 -49941701 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 288 260 142 55 chr3 177583503 177583630 -49940948 - MIR3 SINE MIR -12 196 59 280 269 76 50 chr3 177584117 177584236 -49940342 + L2 LINE L2 3141 3262 -10 817 88 88 0 chr3 177584637 177584751 -49939827 + AluSg/x SINE Alu 173 296 -14 2167 128 0 0 chr3 177584933 177585231 -49939347 - AluSx SINE Alu -14 298 1 195 346 80 48 chr3 177585764 177585952 -49938626 - L2 LINE L2 -565 2749 2556 192 363 67 34 chr3 177586195 177586374 -49938204 - L2 LINE L2 -986 2328 2144 427 111 0 0 chr3 177586705 177586768 -49937810 - AluJ/FRAM SINE Alu -20 292 230 397 252 26 84 chr3 177587073 177587228 -49937350 - MER5B DNA MER1_type -32 146 1 180 158 0 0 chr3 177588256 177588294 -49936284 + (TGAA)n Simple_repeat Simple_repeat 3 40 0 634 225 55 118 chr3 177589530 177589801 -49934777 - MIR SINE MIR -1 261 8 2069 147 0 0 chr3 177591195 177591494 -49933084 - AluJb SINE Alu -13 299 1 219 205 48 12 chr3 177591540 177591623 -49932955 + T-rich Low_complexity Low_complexity 3 88 0 28 0 0 0 chr3 177591666 177591694 -49932884 + AT_rich Low_complexity Low_complexity 1 28 0 258 203 16 16 chr3 177591992 177592056 -49932522 + MER103 DNA DNA 14 77 -89 203 265 73 15 chr3 177592133 177592201 -49932377 - L2 LINE L2 0 3313 3242 39 0 0 0 chr3 177596025 177596064 -49928514 + AT_rich Low_complexity Low_complexity 1 39 0 1928 149 37 0 chr3 177597032 177597327 -49927251 + AluSx SINE Alu 1 306 -6 2056 145 0 3 chr3 177599287 177599598 -49924980 - AluSg SINE Alu 0 310 1 6180 194 7 6 chr3 177600587 177602885 -49921693 + L1PA16 LINE L1 3859 6157 -9 327 242 0 67 chr3 177603188 177603308 -49921270 - L1MC4 LINE L1 -1317 6725 6614 186 43 0 0 chr3 177603828 177603851 -49920727 + (TA)n Simple_repeat Simple_repeat 2 24 0 1928 107 55 7 chr3 177603851 177604141 -49920437 - AluSq SINE Alu -8 305 2 255 342 132 13 chr3 177605647 177605799 -49918779 + L2 LINE L2 2522 2691 -623 580 277 68 43 chr3 177605821 177606056 -49918522 + L2 LINE L2 3068 3308 -5 187 272 37 37 chr3 177608300 177608381 -49916197 - L2 LINE L2 -274 2998 2918 272 298 94 50 chr3 177608764 177608945 -49915633 + MER117 DNA MER1_type 3 191 -6 628 274 82 65 chr3 177609361 177609763 -49914815 + MLT1J LTR MaLR 66 474 -37 770 245 61 99 chr3 177609797 177609898 -49914680 - MER102b DNA MER1_type -1095 333 230 2265 86 3 29 chr3 177609898 177610211 -49914367 - AluSp SINE Alu -8 305 1 770 245 61 99 chr3 177610211 177610452 -49914126 - MER102b DNA MER1_type -1198 230 4 2188 102 0 22 chr3 177611175 177611490 -49913088 + AluSg SINE Alu 1 308 -2 42821 30 22 3 chr3 177611490 177617530 -49907048 + L1PA2 LINE L1 1 6155 0 252 122 0 0 chr3 177619338 177619379 -49905199 + (A)n Simple_repeat Simple_repeat 1 41 0 2143 117 11 0 chr3 177621236 177621551 -49903027 + AluSq SINE Alu 1 318 0 21 0 0 0 chr3 177622911 177622932 -49901646 + AT_rich Low_complexity Low_complexity 1 21 0 1506 134 119 15 chr3 177623425 177623693 -49900885 + AluSg SINE Alu 1 296 -14 280 365 66 25 chr3 177623770 177624014 -49900564 + L2 LINE L2 2860 3113 -159 186 335 107 34 chr3 177624250 177624483 -49900095 + L2 LINE L2 2538 2787 -527 200 330 144 31 chr3 177624764 177624861 -49899717 + L2 LINE L2 3119 3226 -46 428 258 39 0 chr3 177626143 177626298 -49898280 + L1ME4a LINE L1 5961 6121 0 202 343 0 27 chr3 177626601 177626674 -49897904 + MIR SINE MIR 31 101 -161 * 316 298 11 43 chr3 177626660 177626754 -49897824 - MIR SINE MIR -152 110 20 567 247 59 24 chr3 177627187 177627357 -49897221 + MER5B DNA MER1_type 1 176 -2 2136 91 0 23 chr3 177628388 177628696 -49895882 - AluSq SINE Alu -12 301 1 2623 209 67 13 chr3 177628793 177629406 -49895172 + MER82 DNA MER2_type 8 653 0 2354 84 3 7 chr3 177629645 177629944 -49894634 - AluSg SINE Alu -12 298 1 430 288 80 25 chr3 177631276 177631439 -49893139 - MIR SINE MIR -89 173 2 23 40 0 0 chr3 177632006 177632031 -49892547 + AT_rich Low_complexity Low_complexity 1 25 0 395 212 71 35 chr3 177632803 177632916 -49891662 - L2 LINE L2 -1 3271 3155 286 237 263 32 chr3 177633789 177633975 -49890603 - L2 LINE L2 -4 3309 3081 189 262 24 0 chr3 177634726 177634768 -49889810 + L2 LINE L2 3204 3246 -26 24 32 0 0 chr3 177634964 177634995 -49889583 + AT_rich Low_complexity Low_complexity 1 31 0 2231 164 65 2 chr3 177635751 177636154 -49888424 - MSTA LTR MaLR 0 428 1 753 186 8 0 chr3 177636187 177636316 -49888262 - FLAM_A SINE Alu -3 130 1 2689 47 0 4 chr3 177636547 177637105 -49887473 - L1PA5 LINE L1 -557 5597 5042 2418 24 3 0 chr3 177637101 177637397 -49887181 + L1PA5 LINE L1 5598 5894 -260 * 2241 88 0 10 chr3 177638493 177638787 -49885791 - AluSc SINE Alu -18 291 1 256 295 63 82 chr3 177638894 177639101 -49885477 + L2 LINE L2 3030 3232 -40 609 298 149 54 chr3 177639567 177640138 -49884440 + L2 LINE L2 1933 2557 -757 1281 138 0 30 chr3 177640139 177640364 -49884214 + AluJb SINE Alu 87 305 0 202 299 133 87 chr3 177640381 177640773 -49883805 + L2 LINE L2 2568 2977 -337 198 309 107 65 chr3 177640908 177641076 -49883502 + L2 LINE L2 2785 2959 -355 229 200 0 50 chr3 177641394 177641401 -49883177 + (TGAA)n Simple_repeat Simple_repeat 3 9 -50 740 197 0 8 chr3 177641401 177641533 -49883045 + FLAM_A SINE Alu 1 131 -2 229 200 0 50 chr3 177641533 177641585 -49882993 + (TGAA)n Simple_repeat Simple_repeat 9 59 0 235 250 0 0 chr3 177641972 177642024 -49882554 - MER5B DNA MER1_type -125 53 2 488 224 192 0 chr3 177642030 177642186 -49882392 - MER5A DNA MER1_type 0 189 4 231 342 55 9 chr3 177642725 177642859 -49881719 - MIR3 SINE MIR -54 154 34 2154 114 0 19 chr3 177643197 177643513 -49881065 - AluSg SINE Alu 0 310 1 1940 205 35 76 chr3 177644039 177644797 -49879781 - L1ME1 LINE L1 -9 6175 5463 1573 176 20 72 chr3 177644797 177645177 -49879401 + MLT2B3 LTR ERVL 1 395 -2 1399 162 49 18 chr3 177646340 177646789 -49877789 + MER44D DNA MER2_type 1 605 0 1737 126 69 0 chr3 177647146 177647408 -49877170 - AluSx SINE Alu -15 297 18 455 179 13 0 chr3 177647408 177647486 -49877092 - MLT1D LTR MaLR -423 82 4 1058 189 14 27 chr3 177647528 177647750 -49876828 + MER20 DNA MER1_type 1 219 0 2503 84 3 0 chr3 177648412 177648723 -49875855 - AluSp SINE Alu -1 312 1 213 154 0 0 chr3 177648892 177648931 -49875647 + (TG)n Simple_repeat Simple_repeat 2 40 0 1670 138 3 99 chr3 177649990 177650324 -49874254 + AluJo SINE Alu 1 302 0 2318 100 3 0 chr3 177651298 177651609 -49872969 + AluSx SINE Alu 1 312 0 181 333 20 40 chr3 177651740 177651839 -49872739 + L2 LINE L2 3169 3265 -48 198 158 0 26 chr3 177652038 177652076 -49872502 + L2 LINE L2 2183 2219 -1095 26 64 0 0 chr3 177652225 177652272 -49872306 + AT_rich Low_complexity Low_complexity 1 47 0 212 98 0 24 chr3 177653184 177653225 -49871353 + (TTTTG)n Simple_repeat Simple_repeat 1 40 0 285 262 0 0 chr3 177653861 177653922 -49870656 - MIR SINE MIR -130 132 72 374 323 108 83 chr3 177656850 177657569 -49867009 + L1M2 LINE L1 412 1148 -5701 401 297 6 44 chr3 177657864 177658046 -49866532 + CT-rich Low_complexity Low_complexity 3 177 0 372 77 0 0 chr3 177658477 177658529 -49866049 + (CA)n Simple_repeat Simple_repeat 2 53 0 1518 161 70 7 chr3 177658942 177659092 -49865486 - AluSx SINE Alu -21 291 152 312 27 0 0 chr3 177659092 177659129 -49865449 + (TG)n Simple_repeat Simple_repeat 2 38 0 1518 161 70 7 chr3 177659129 177659251 -49865327 - AluSx SINE Alu -160 152 2 606 114 29 19 chr3 177659453 177659558 -49865020 - FLAM_A SINE Alu -13 129 24 249 273 0 0 chr3 177659963 177660029 -49864549 + L1MEd LINE L1 98 163 -5956 3827 142 11 9 chr3 177660030 177660664 -49863914 + MER41B LTR ERV1 1 635 0 735 146 32 8 chr3 177661367 177661490 -49863088 + FLAM_A SINE Alu 3 128 -5 392 266 23 23 chr3 177661732 177661950 -49862628 + L1MEd LINE L1 2093 2310 -3819 358 289 66 61 chr3 177662077 177662459 -49862119 + L1MEd LINE L1 2471 2859 -3270 2096 147 0 10 chr3 177662459 177662773 -49861805 + AluSx SINE Alu 1 311 -1 358 289 66 61 chr3 177662773 177663013 -49861565 + L1MEd LINE L1 2859 3096 -3033 338 322 35 62 chr3 177663097 177663132 -49861446 + L1MEd LINE L1 4100 4134 -1995 180 0 0 0 chr3 177663132 177663152 -49861426 + (GA)n Simple_repeat Simple_repeat 2 21 0 338 322 35 62 chr3 177663152 177663343 -49861235 + L1MEd LINE L1 4134 4320 -1809 282 233 0 47 chr3 177663457 177663543 -49861035 + MER58C DNA MER1_type 115 196 -19 274 226 81 81 chr3 177663901 177664025 -49860553 - MER58C DNA MER1_type -91 124 1 318 239 34 0 chr3 177664163 177664251 -49860327 + LTR37A LTR ERV1 110 200 -226 447 237 56 31 chr3 177664394 177664618 -49859960 + L1ME3 LINE L1 5607 5847 -323 241 323 152 44 chr3 177664883 177665007 -49859571 - L2 LINE L2 -572 2742 2633 2789 19 0 3 chr3 177665007 177665324 -49859254 - AluYb8 SINE Alu -2 316 1 241 323 152 44 chr3 177665324 177665515 -49859063 - L2 LINE L2 -681 2633 2393 2628 229 27 44 chr3 177668747 177669586 -49854992 - L1ME1 LINE L1 -5 6161 5337 2398 97 0 3 chr3 177669610 177669920 -49854658 + AluSg SINE Alu 1 309 -1 698 290 106 28 chr3 177670214 177670686 -49853892 - MER113 DNA MER1_type? -7 514 6 206 333 26 26 chr3 177671111 177671189 -49853389 + MIR3 SINE MIR 112 189 -19 283 344 88 8 chr3 177671812 177671937 -49852641 - L2 LINE L2 0 3272 3138 1406 224 60 36 chr3 177672077 177672524 -49852054 + MLT1C LTR MaLR 6 463 -4 233 325 24 0 chr3 177672533 177672616 -49851962 - L2 LINE L2 -273 2999 2915 2137 103 7 3 chr3 177672930 177673220 -49851358 - AluSx SINE Alu -21 291 1 574 200 75 19 chr3 177673230 177673390 -49851188 - MLT1B LTR MaLR -221 169 1 600 103 39 13 chr3 177673513 177673669 -49850909 + (TATAA)n Simple_repeat Simple_repeat 5 164 0 466 125 64 22 chr3 177673674 177674135 -49850443 + (TA)n Simple_repeat Simple_repeat 1 480 0 321 336 52 36 chr3 177674159 177674175 -49850403 - L1MCa LINE L1 -5391 1035 1021 2051 93 69 0 chr3 177674175 177674464 -49850114 - AluSg SINE Alu -1 309 1 321 336 52 36 chr3 177674464 177674697 -49849881 - L1MCa LINE L1 -5405 1021 782 21 0 0 0 chr3 177675037 177675058 -49849520 + AT_rich Low_complexity Low_complexity 1 21 0 520 265 15 81 chr3 177675089 177675278 -49849300 + L1M4 LINE L1 4081 4246 -1900 1971 139 3 10 chr3 177675278 177675580 -49848998 + AluSx SINE Alu 1 300 -12 520 265 15 81 chr3 177675580 177675681 -49848897 + L1M4 LINE L1 4246 4352 -1794 1437 178 3 13 chr3 177675771 177676075 -49848503 - AluY SINE Alu 0 301 1 1089 49 7 49 chr3 177675935 177676079 -49848499 - AluY SINE Alu -172 139 2 529 221 31 132 chr3 177676208 177676376 -49848202 + MLT1A1 LTR MaLR 10 193 -274 381 58 0 0 chr3 177676376 177676428 -49848150 + (TC)n Simple_repeat Simple_repeat 2 53 0 529 221 31 132 chr3 177676428 177676565 -49848013 + MLT1A1 LTR MaLR 193 422 -45 340 303 18 18 chr3 177676766 177676875 -49847703 - MIR3 SINE MIR -6 202 94 612 330 71 4 chr3 177677666 177677905 -49846673 + MIR SINE MIR 5 259 -3 1965 129 23 20 chr3 177677977 177678279 -49846299 - AluSg SINE Alu -7 303 1 244 232 54 62 chr3 177678845 177678957 -49845621 - L2 LINE L2 0 3313 3203 220 125 25 0 chr3 177679141 177679181 -49845397 + T-rich Low_complexity Low_complexity 6 46 0 4400 26 4 14 chr3 177679777 177680467 -49844111 - L1PA3 LINE L1 -619 5536 4851 5369 24 2 2 chr3 177680467 177681093 -49843485 + L1PA3 LINE L1 5526 6152 -3 1780 244 58 49 chr3 177681404 177681665 -49842913 - L1ME3A LINE L1 -12 6158 5901 2101 126 3 3 chr3 177681665 177681959 -49842619 - AluSx SINE Alu -16 296 3 1780 244 58 49 chr3 177681959 177682421 -49842157 - L1ME3A LINE L1 -269 5901 5425 1766 167 16 0 chr3 177682431 177682736 -49841842 - AluSq SINE Alu -1 312 3 481 154 49 15 chr3 177683131 177683241 -49841337 - MLT1C LTR MaLR 0 467 381 974 268 55 0 chr3 177683274 177683509 -49841069 - MLT1C-int LTR MaLR -247 1124 877 304 137 0 0 chr3 177683588 177683639 -49840939 - MLT1C-int LTR MaLR -487 884 834 2059 149 35 19 chr3 177683639 177684008 -49840570 + THE1C LTR MaLR 1 375 0 2918 146 90 6 chr3 177684008 177684529 -49840049 + THE1C-int LTR MaLR 1 565 -1015 8418 138 54 9 chr3 177684634 177685973 -49838605 + THE1C-int LTR MaLR 182 1580 0 2201 139 24 24 chr3 177685973 177686348 -49838230 + THE1C LTR MaLR 1 375 0 2056 228 47 4 chr3 177686349 177686813 -49837765 - MLT1C-int LTR MaLR -534 837 354 * 4192 131 8 2 chr3 177686809 177687612 -49836966 + L1PA15 LINE L1 5070 5877 -288 766 208 0 14 chr3 177687704 177687848 -49836730 + THE1C LTR MaLR 1 142 -233 2470 153 2 12 chr3 177688038 177688469 -49836109 + L1PA15 LINE L1 5735 6161 -4 1361 179 45 26 chr3 177688491 177688618 -49835960 - MLT1C-int LTR MaLR -1002 369 246 426 20 0 0 chr3 177688618 177688669 -49835909 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 1361 179 45 26 chr3 177688669 177688853 -49835725 - MLT1C-int LTR MaLR -1125 246 52 939 221 90 43 chr3 177688853 177689152 -49835426 - MLT1C LTR MaLR -149 318 6 357 289 70 31 chr3 177689396 177689683 -49834895 + HAL1b LINE L1 83 380 -968 357 306 69 19 chr3 177690062 177690222 -49834356 + L1MC/D LINE L1 320 487 -5583 500 281 54 56 chr3 177690402 177690812 -49833766 + L1MC/D LINE L1 467 875 -5208 4186 122 26 51 chr3 177690814 177691582 -49832996 - Tigger3(Golem) DNA MER2_type -4 3025 2277 2253 109 0 7 chr3 177691597 177691901 -49832677 - AluSq SINE Alu -11 302 1 493 200 21 0 chr3 177691902 177691997 -49832581 - Tigger3(Golem) DNA MER2_type -2932 97 1 884 215 39 55 chr3 177692015 177692345 -49832233 + L1MC/D LINE L1 886 1210 -4870 862 207 133 24 chr3 177692337 177692719 -49831859 + L1MC/D LINE L1 2828 3251 -2829 * 334 113 16 32 chr3 177692721 177692783 -49831795 + Alu SINE Alu 240 300 -1 2016 108 3 14 chr3 177692860 177693156 -49831422 + AluSc SINE Alu 1 293 -16 361 346 82 20 chr3 177693278 177693631 -49830947 + L1MC/D LINE L1 3523 3897 -2183 943 99 7 21 chr3 177693661 177693803 -49830775 + AluSp/q SINE Alu 168 307 -6 2039 143 0 13 chr3 177693879 177694194 -49830384 + AluSx SINE Alu 1 311 -1 417 350 66 48 chr3 177694316 177694685 -49829893 + L1MC/D LINE L1 4454 4842 -1238 2392 87 3 3 chr3 177694685 177694994 -49829584 + AluSp SINE Alu 1 309 -4 417 350 66 48 chr3 177694994 177695295 -49829283 + L1MC/D LINE L1 4842 5136 -944 510 17 0 0 chr3 177695362 177695421 -49829157 + (TA)n Simple_repeat Simple_repeat 2 60 0 522 273 88 20 chr3 177695495 177695744 -49828834 + L1MC/D LINE L1 5252 5517 -2225 24 32 0 0 chr3 177696809 177696840 -49827738 + AT_rich Low_complexity Low_complexity 1 31 0 513 179 0 0 chr3 177696892 177696987 -49827591 - L1MB1 LINE L1 -2 6166 6072 457 271 165 21 chr3 177697033 177697269 -49827309 - L2 LINE L2 -611 2703 2434 240 295 8 33 chr3 177697595 177697717 -49826861 - L1MC4 LINE L1 -6 8036 7918 200 195 0 0 chr3 177697718 177697759 -49826819 + CT-rich Low_complexity Low_complexity 2 42 0 * 252 213 53 0 chr3 177697758 177697833 -49826745 + (TA)n Simple_repeat Simple_repeat 1 79 0 235 133 0 83 chr3 177697836 177697896 -49826682 + L1MC4 LINE L1 6658 6712 -1330 874 217 33 24 chr3 177697946 177698158 -49826420 + MER20 DNA MER1_type 6 219 0 543 195 34 0 chr3 177698413 177698531 -49826047 + L1MA9 LINE L1 6189 6310 -2 779 205 11 10 chr3 177698556 177698754 -49825824 - L1MC4 LINE L1 -95 7713 7619 850 326 52 14 chr3 177698857 177699222 -49825356 + L2 LINE L2 1200 1578 -1736 1325 133 9 9 chr3 177699423 177699649 -49824929 + Tigger7 DNA MER2_type 301 526 -1961 532 217 0 0 chr3 177699643 177699735 -49824843 + Tigger7 DNA MER2_type 2396 2487 0 * 1509 249 80 20 chr3 177700351 177700841 -49823737 + L2 LINE L2 1716 2234 -1080 587 266 38 38 chr3 177700843 177701027 -49823551 + MIR SINE MIR 2 185 -77 408 288 129 0 chr3 177701038 177701201 -49823377 - LTR33A LTR ERVL -12 511 328 1795 214 87 4 chr3 177701202 177701721 -49822857 + L1ME1 LINE L1 4739 5300 -846 1179 239 21 47 chr3 177701702 177702088 -49822490 + L1ME1 LINE L1 5797 6331 -3 * 1474 268 86 61 chr3 177702098 177702842 -49821736 + L2 LINE L2 2335 3116 -197 53 93 0 0 chr3 177702984 177703135 -49821443 + AT_rich Low_complexity Low_complexity 1 151 0 605 282 44 6 chr3 177703307 177703488 -49821090 - MER117 DNA MER1_type -6 191 4 3566 142 16 4 chr3 177705071 177705633 -49818945 + LTR24B LTR ERV1 1 569 -7 1225 223 56 60 chr3 177705633 177706231 -49818347 + LTR24B-int LTR ERV1 1 737 -4386 2167 110 0 13 chr3 177706399 177706716 -49817862 + AluSq SINE Alu 1 313 0 252 247 52 13 chr3 177707253 177707330 -49817248 + LTR24B-int LTR ERV1 1130 1209 -5122 229 288 15 15 chr3 177707337 177707403 -49817175 + tRNA-Glu-GAG tRNA tRNA 10 75 0 317 246 25 42 chr3 177707403 177707521 -49817057 + LTR24B-int LTR ERV1 1283 1398 -4933 693 185 93 25 chr3 177707632 177707794 -49816784 + LTR24B-int LTR ERV1 1372 1544 -4787 524 206 110 20 chr3 177707878 177707935 -49816643 + LTR23-int LTR ERV1 841 892 -4231 206 32 32 0 chr3 177707935 177707966 -49816612 + (CAA)n Simple_repeat Simple_repeat 2 33 0 524 206 110 20 chr3 177707966 177708054 -49816524 + LTR23-int LTR ERV1 892 999 -4124 477 309 154 13 chr3 177708054 177708287 -49816291 + MER34C LTR ERV1 165 430 -155 1105 207 56 54 chr3 177708287 177708817 -49815761 + LTR23-int LTR ERV1 1225 3272 -3059 1949 198 37 41 chr3 177709023 177709559 -49815019 + LTR23-int LTR ERV1 3694 4227 -2104 339 147 15 15 chr3 177709560 177709628 -49814950 + LTR24B LTR ERV1 502 569 -7 558 274 225 41 chr3 177709914 177710283 -49814295 + L2 LINE L2 2875 3311 -2 241 315 27 0 chr3 177710488 177710561 -49814017 - L2 LINE L2 0 3272 3198 339 346 19 0 chr3 177710759 177710863 -49813715 - L2 LINE L2 -242 3030 2925 211 394 0 10 chr3 177711305 177711404 -49813174 - L2 LINE L2 -940 2374 2277 1868 141 7 7 chr3 177711666 177711950 -49812628 - AluSx SINE Alu -28 284 1 316 284 0 0 chr3 177712031 177712098 -49812480 - MIR SINE MIR -180 82 16 899 95 0 9 chr3 177712450 177712566 -49812012 + AluSq SINE Alu 53 167 -146 27830 78 13 3 chr3 177812568 177817239 -49707339 + L1PA7 LINE L1 1267 5976 -178 258 294 206 32 chr3 177817352 177817696 -49706882 - L2 LINE L2 -1021 2293 1890 189 301 90 45 chr3 177817890 177818023 -49706555 - L2 LINE L2 -1901 1413 1275 247 362 76 27 chr3 177818373 177818581 -49705997 - L2 LINE L2 -2478 836 640 2037 128 10 0 chr3 177818581 177818869 -49705709 + AluSx SINE Alu 1 291 -21 5774 17 1 0 chr3 177818869 177819528 -49705050 + L1PA2 LINE L1 5496 6155 0 247 362 76 27 chr3 177819528 177819542 -49705036 - L2 LINE L2 -2673 641 602 512 301 80 9 chr3 177819580 177819793 -49704785 + MIR SINE MIR 21 248 -14 634 214 23 0 chr3 177819793 177819924 -49704654 - MER94 DNA DNA 0 134 1 223 353 49 0 chr3 177819926 177820048 -49704530 - MIR3 SINE MIR -23 185 58 484 204 65 21 chr3 177820400 177820639 -49703939 + MLT1F LTR MaLR 207 529 -38 235 261 91 34 chr3 177820904 177820992 -49703586 + L2 LINE L2 3179 3271 -1 221 287 85 21 chr3 177821117 177821211 -49703367 - MIR3 SINE MIR -36 172 73 2231 135 0 0 chr3 177821500 177821812 -49702766 + AluSx SINE Alu 1 312 0 405 58 0 0 chr3 177821812 177821864 -49702714 + (GGAA)n Simple_repeat Simple_repeat 2 53 0 1098 94 11 11 chr3 177821864 177822044 -49702534 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 208 336 0 29 chr3 177823265 177823405 -49701173 + GA-rich Low_complexity Low_complexity 1 136 0 1735 156 30 55 chr3 177823461 177823896 -49700682 - L1MB7 LINE L1 -142 6042 5619 322 319 142 19 chr3 177824910 177825170 -49699408 - L1MB7 LINE L1 -491 5630 5339 198 71 0 0 chr3 177825231 177825259 -49699319 + (TG)n Simple_repeat Simple_repeat 1 28 0 210 338 25 0 chr3 177825259 177825340 -49699238 + GA-rich Low_complexity Low_complexity 1 83 0 931 243 23 116 chr3 177825877 177826310 -49698268 + L2 LINE L2 2921 3313 0 24 0 0 0 chr3 177826924 177826948 -49697630 + AT_rich Low_complexity Low_complexity 1 24 0 5008 131 49 36 chr3 177826962 177828032 -49696546 + MER41-int LTR ERV1 4252 5232 -714 371 237 21 65 chr3 177828200 177828386 -49696192 + G-rich Low_complexity Low_complexity 1 178 0 365 261 0 22 chr3 177828411 177828591 -49695987 + G-rich Low_complexity Low_complexity 1 176 0 1399 106 8 8 chr3 177828651 177828886 -49695692 + L1PA2 LINE L1 5921 6155 0 11899 168 32 4 chr3 177828889 177831508 -49693070 + L1MA1 LINE L1 2762 5456 -743 5067 98 18 21 chr3 177831973 177832772 -49691806 + L1MA1 LINE L1 5506 6301 -1 215 183 0 0 chr3 177832924 177832963 -49691615 + MIR SINE MIR 105 144 -64 549 210 0 0 chr3 177833102 177833221 -49691357 - L1MA4 LINE L1 -39 6261 6143 38 22 0 0 chr3 177834859 177834904 -49689674 + AT_rich Low_complexity Low_complexity 1 45 0 289 200 0 46 chr3 177834912 177834977 -49689601 + A-rich Low_complexity Low_complexity 1 62 0 187 137 20 20 chr3 177834985 177835036 -49689542 + (CCA)n Simple_repeat Simple_repeat 1 51 0 312 208 113 28 chr3 177839057 177839163 -49685415 - L1ME4a LINE L1 -17 6104 5990 2852 13 0 0 chr3 177841619 177841933 -49682645 - AluYb8 SINE Alu -4 314 1 393 195 203 8 chr3 177842281 177842399 -49682179 - MIR SINE MIR 0 262 122 2251 105 3 0 chr3 177843311 177843606 -49680972 - AluSx SINE Alu -16 296 1 334 247 59 68 chr3 177844548 177844695 -49679883 - MIR SINE MIR -65 143 32 866 205 142 68 chr3 177846202 177846363 -49678215 + L1ME3 LINE L1 5612 5760 -402 1909 178 3 0 chr3 177846363 177846672 -49677906 - AluJb SINE Alu -2 310 1 866 205 142 68 chr3 177846672 177846934 -49677644 + L1ME3 LINE L1 5760 6066 -96 22 0 0 0 chr3 177848423 177848445 -49676133 + AT_rich Low_complexity Low_complexity 1 22 0 2151 131 7 0 chr3 177848489 177848795 -49675783 - AluSx SINE Alu -4 308 1 2210 172 44 28 chr3 177852716 177852826 -49671752 + Tigger7 DNA MER2_type 1 108 -2379 2125 124 3 3 chr3 177852826 177853124 -49671454 - AluSx SINE Alu -14 298 1 2210 172 44 28 chr3 177853124 177853495 -49671083 + Tigger7 DNA MER2_type 108 2444 -43 714 170 0 7 chr3 177854264 177854416 -49670162 - L1M4 LINE L1 -697 5487 5337 21 0 0 0 chr3 177855218 177855239 -49669339 + AT_rich Low_complexity Low_complexity 1 21 0 246 281 281 25 chr3 177855368 177855564 -49669014 - MIR SINE MIR 0 262 17 285 250 28 0 chr3 177855669 177855741 -49668837 - MIR SINE MIR -6 256 183 23 0 0 0 chr3 177856150 177856173 -49668405 + AT_rich Low_complexity Low_complexity 1 23 0 2211 113 0 7 chr3 177856694 177856995 -49667583 + AluSq SINE Alu 1 299 -14 194 300 70 70 chr3 177857383 177857483 -49667095 + MIR SINE MIR 94 193 -69 236 296 9 9 chr3 177857948 177858063 -49666515 - L1ME LINE L1 -298 5823 5709 1970 261 82 13 chr3 177858258 177858721 -49665857 - L1ME3A LINE L1 0 6170 5740 2259 107 0 3 chr3 177858721 177859021 -49665557 - AluSq SINE Alu -14 299 1 1970 261 82 13 chr3 177859021 177859414 -49665164 - L1ME3A LINE L1 -430 5740 5255 398 235 167 5 chr3 177859493 177859697 -49664881 - L1ME3A LINE L1 -880 5266 5030 290 328 0 8 chr3 177860150 177860275 -49664303 - MARNA DNA Mariner -200 386 263 21 36 0 0 chr3 177860290 177860318 -49664260 + AT_rich Low_complexity Low_complexity 1 28 0 223 353 49 0 chr3 177861015 177861137 -49663441 + MIR3 SINE MIR 58 185 -23 634 214 23 0 chr3 177861139 177861270 -49663308 + MER94 DNA DNA 1 134 0 512 301 80 9 chr3 177861270 177861483 -49663095 - MIR SINE MIR -14 248 21 39520 32 22 1 chr3 177861535 177867400 -49657178 - L1PA2 LINE L1 0 6470 147 432 331 43 73 chr3 177867490 177867819 -49656759 - L2 LINE L2 -44 3228 2910 318 312 50 59 chr3 177867913 177868115 -49656463 - L2 LINE L2 -508 2806 2607 605 283 130 13 chr3 177870243 177870473 -49654105 - MIR SINE MIR 0 262 6 256 385 59 36 chr3 177871968 177872189 -49652389 - L2 LINE L2 -49 3223 2998 1986 151 3 3 chr3 177872208 177872512 -49652066 + AluJo SINE Alu 1 304 -8 1273 214 126 43 chr3 177872512 177872956 -49651622 - MLT1D LTR MaLR -7 498 18 508 245 0 0 chr3 177873131 177873237 -49651341 - Tigger7 DNA MER2_type 0 2491 2386 869 197 101 5 chr3 177873244 177873432 -49651146 - Tigger7 DNA MER2_type -523 210 5 521 263 75 0 chr3 177874755 177874915 -49649663 + MER5B DNA MER1_type 1 172 -6 21 0 0 0 chr3 177874960 177874981 -49649597 + AT_rich Low_complexity Low_complexity 1 21 0 1049 222 25 116 chr3 177876173 177876605 -49647973 + L2 LINE L2 2921 3313 0 24 0 0 0 chr3 177877439 177877463 -49647115 + AT_rich Low_complexity Low_complexity 1 24 0 2412 36 0 7 chr3 177878174 177878457 -49646121 - AluY SINE Alu -32 279 1 190 389 0 0 chr3 177878812 177878884 -49645694 + L3 LINE CR1 1491 1562 -15 188 265 0 41 chr3 177878837 177878886 -49645692 + MIR3 SINE MIR 143 189 -19 * 223 100 150 0 chr3 177878898 177878938 -49645640 - L2 LINE L2 0 3272 3227 2260 152 52 57 chr3 177879226 177879686 -49644892 + L1MB2 LINE L1 5712 6169 -2 1689 191 0 0 chr3 177879916 177880189 -49644389 + AluJb SINE Alu 1 273 -39 745 205 0 0 chr3 177880220 177880337 -49644241 + FLAM_C SINE Alu 2 118 -25 1583 172 156 16 chr3 177880407 177880727 -49643851 + MLT1A1 LTR MaLR 1 365 0 258 194 41 112 chr3 177881230 177881328 -49643250 - LTR67 LTR ERVL -54 503 413 462 276 13 17 chr3 177881342 177881521 -49643057 + MLT1E LTR MaLR 10 189 -378 443 114 18 53 chr3 177881552 177881666 -49642912 + (TC)n Simple_repeat Simple_repeat 2 111 0 2329 65 7 0 chr3 177882916 177883207 -49641371 + AluY SINE Alu 1 293 -18 335 306 36 9 chr3 177883213 177883324 -49641254 + MIR SINE MIR 91 204 -58 1174 193 58 97 chr3 177885540 177885995 -49638583 - MLT1C LTR MaLR -27 515 4 2249 86 7 0 chr3 177886254 177886544 -49638034 - AluSc SINE Alu 0 309 18 228 138 11 184 chr3 177888892 177888979 -49635599 + MLT1L LTR MaLR 1 72 -543 381 302 10 0 chr3 177889006 177889111 -49635467 + MLT1L LTR MaLR 119 288 -327 229 296 70 0 chr3 177889176 177889247 -49635331 + MLT1L LTR MaLR 309 384 -231 485 225 40 33 chr3 177889526 177889719 -49634859 + MLT1I LTR MaLR 267 409 0 1705 235 53 13 chr3 177890003 177890399 -49634179 + LTR16C LTR ERVL 79 490 -1 289 218 13 13 chr3 177890617 177890695 -49633883 + LTR67 LTR ERVL 458 535 -22 182 36 0 36 chr3 177890995 177891023 -49633555 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 1641 196 129 11 chr3 177891218 177891658 -49632920 + L1MC4a LINE L1 6868 7359 -449 947 223 76 148 chr3 177891658 177892266 -49632312 + MLT2B3 LTR ERVL 1 482 -33 2538 102 17 11 chr3 177892266 177892619 -49631959 - THE1A LTR MaLR 0 355 1 947 223 76 148 chr3 177892619 177892651 -49631927 + MLT2B3 LTR ERVL 482 515 0 2454 250 47 17 chr3 177892672 177893315 -49631263 + ERVL-B3 LTR ERVL 55 716 -5048 1408 240 30 0 chr3 177893372 177893705 -49630873 + L1MD3 LINE L1 7645 7987 -8 38 93 0 0 chr3 177893919 177894027 -49630551 + AT_rich Low_complexity Low_complexity 1 108 0 257 209 30 30 chr3 177894287 177894354 -49630224 - MIR SINE MIR -18 244 178 1035 113 60 0 chr3 177894354 177894505 -49630073 - LTR45 LTR ERV1 0 525 366 1058 185 81 5 chr3 177894506 177894717 -49629861 + AluJb SINE Alu 86 312 0 2538 127 8 5 chr3 177894722 177895093 -49629485 - LTR45 LTR ERV1 -153 372 1 187 298 18 0 chr3 177895155 177895212 -49629366 - MIR SINE MIR -200 62 5 559 310 108 43 chr3 177895899 177896344 -49628234 - Charlie8 DNA MER1_type -1896 521 48 504 267 256 8 chr3 177896344 177896438 -49628140 + L2 LINE L2 1990 2059 -1255 1651 110 46 0 chr3 177896438 177896657 -49627921 + MER30 DNA MER1_type 2 230 0 504 267 256 8 chr3 177896657 177896925 -49627653 + L2 LINE L2 2059 2442 -872 209 296 12 37 chr3 177896998 177897079 -49627499 + L2 LINE L2 2962 3040 -232 259 112 3 0 chr3 177897079 177897122 -49627456 - MER45A DNA AcHobo 0 178 135 1013 292 69 65 chr3 177897202 177897722 -49626856 - MER45C DNA AcHobo -431 522 1 2185 127 0 6 chr3 177898264 177898578 -49626000 + AluSx SINE Alu 1 312 0 333 68 0 0 chr3 177898578 177898622 -49625956 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 1056 106 11 11 chr3 177898622 177898802 -49625776 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 315 332 47 39 chr3 177899954 177900096 -49624482 + ERVL-B3 LTR ERVL 1548 1647 -3349 1200 176 11 0 chr3 177900096 177900283 -49624295 + MER5A DNA MER1_type 1 189 0 315 332 47 39 chr3 177900283 177900440 -49624138 + ERVL-B3 LTR ERVL 1647 1801 -3195 417 20 0 0 chr3 177900651 177900701 -49623877 + (TAGA)n Simple_repeat Simple_repeat 2 51 0 921 366 16 16 chr3 177900712 177901214 -49623364 + ERVL-B3 LTR ERVL 2414 2915 -2570 550 347 37 20 chr3 177901208 177901611 -49622967 + ERVL-B3 LTR ERVL 3366 3775 -1989 * 529 280 12 48 chr3 177901601 177901769 -49622809 + ERVL-B3 LTR ERVL 4038 4199 -1565 * 430 280 66 16 chr3 177901780 177901962 -49622616 + ERVL-B3 LTR ERVL 4779 4969 -795 335 319 55 20 chr3 177903744 177903919 -49620659 + MIR SINE MIR 3 192 -61 285 283 99 119 chr3 177904203 177904556 -49620022 - L2 LINE L2 0 3272 2927 2324 94 3 0 chr3 177905104 177905402 -49619176 + AluY SINE Alu 1 299 -12 17798 149 24 28 chr3 177905520 177907567 -49617011 + L1M1 LINE L1 704 2717 -4848 2198 128 0 0 chr3 177907567 177907864 -49616714 + AluSq SINE Alu 1 297 -16 17798 149 24 28 chr3 177907864 177909338 -49615240 + L1M1 LINE L1 2717 4197 -3368 43489 35 22 1 chr3 177909338 177915224 -49609354 + L1PA2 LINE L1 1 6012 -143 243 119 34 17 chr3 177915345 177915404 -49609174 + CT-rich Low_complexity Low_complexity 2 61 0 384 22 0 0 chr3 177915404 177915449 -49609129 + (CA)n Simple_repeat Simple_repeat 1 45 0 1297 219 39 19 chr3 177915459 177915769 -49608809 + MLT1F1 LTR MaLR 248 563 -4 688 283 53 78 chr3 177915781 177916194 -49608384 - LTR67 LTR ERVL -152 405 3 2273 96 0 13 chr3 177916551 177916853 -49607725 + AluSx SINE Alu 1 298 -14 2229 110 0 19 chr3 177916859 177917167 -49607411 + AluSx SINE Alu 1 302 -10 11622 118 57 32 chr3 177918338 177918677 -49605901 - Tigger1 DNA MER2_type 0 2418 2089 1917 86 4 4 chr3 177918677 177918946 -49605632 - AluSq SINE Alu 0 307 39 11622 118 57 32 chr3 177918946 177919244 -49605334 - Tigger1 DNA MER2_type -329 2089 1800 1991 67 35 4 chr3 177919244 177919498 -49605080 - AluY SINE Alu -13 298 37 11622 118 57 32 chr3 177919498 177920260 -49604318 - Tigger1 DNA MER2_type -618 1800 956 2249 114 0 0 chr3 177920260 177920558 -49604020 + AluSx SINE Alu 1 298 -14 11622 118 57 32 chr3 177920558 177921068 -49603510 - Tigger1 DNA MER2_type -1462 956 460 6687 124 63 19 chr3 177921079 177921354 -49603224 + L1PB1 LINE L1 1 262 -6601 2233 133 15 56 chr3 177921354 177921745 -49602833 + THE1C LTR MaLR 1 375 0 10385 119 59 9 chr3 177921745 177922182 -49602396 + THE1C-int LTR MaLR 1 415 -1165 2351 110 3 0 chr3 177922182 177922490 -49602088 + AluSq SINE Alu 1 309 -4 10385 119 59 9 chr3 177922490 177923557 -49601021 + THE1C-int LTR MaLR 415 1580 0 2068 131 39 65 chr3 177923557 177923940 -49600638 + THE1C LTR MaLR 1 373 -2 6687 124 63 19 chr3 177923940 177924772 -49599806 + L1PB1 LINE L1 261 1159 -5704 15532 181 32 34 chr3 177924774 177930311 -49594267 + L1PB1 LINE L1 1290 6867 0 2480 174 2 39 chr3 177930321 177930810 -49593768 - Tigger1 DNA MER2_type -1944 474 4 42789 33 1 1 chr3 177930811 177936967 -49587611 + L1PA3 LINE L1 1 6152 -3 2270 105 6 10 chr3 177940080 177940393 -49584185 + AluSx SINE Alu 1 312 0 816 182 30 110 chr3 177940434 177940670 -49583908 + MER20 DNA MER1_type 3 219 0 345 362 55 73 chr3 177941133 177941763 -49582815 - L2 LINE L2 -5 3267 2637 223 217 50 33 chr3 177941935 177941995 -49582583 + L2 LINE L2 3198 3258 -55 1955 137 33 7 chr3 177942025 177942324 -49582254 - AluSx SINE Alu -5 307 1 198 0 0 0 chr3 177943463 177943485 -49581093 + (TTC)n Simple_repeat Simple_repeat 1 22 0 551 243 99 28 chr3 177943628 177943809 -49580769 + MIR SINE MIR 43 236 -26 188 308 0 46 chr3 177944009 177944074 -49580504 + L2 LINE L2 3211 3272 0 712 250 197 28 chr3 177944131 177944491 -49580087 + MLT1J2 LTR MaLR 1 421 -29 587 275 167 22 chr3 177944757 177945026 -49579552 - MER102b DNA MER1_type -1 340 33 1706 90 0 5 chr3 177945062 177945285 -49579293 + AluSq SINE Alu 75 296 -17 1795 179 22 47 chr3 177945440 177945847 -49578731 + MLT2C1 LTR ERVL 1 397 0 21 36 0 0 chr3 177946170 177946198 -49578380 + AT_rich Low_complexity Low_complexity 1 28 0 1327 141 80 19 chr3 177947311 177947574 -49577004 - Tigger7 DNA MER2_type 0 2587 2309 974 195 6 0 chr3 177947578 177947747 -49576831 - Tigger7 DNA MER2_type -562 171 2 413 280 121 16 chr3 177948074 177948256 -49576322 + MIR SINE MIR 30 230 -32 336 381 101 40 chr3 177949626 177950049 -49574529 + L2 LINE L2 165 561 -2753 5794 15 0 1 chr3 177950049 177950709 -49573869 - L1PA3 LINE L1 -1 6154 5496 2027 132 10 0 chr3 177950709 177950997 -49573581 - AluSx SINE Alu -21 291 1 336 381 101 40 chr3 177950997 177951205 -49573373 + L2 LINE L2 560 836 -2478 189 301 90 45 chr3 177951555 177951688 -49572890 + L2 LINE L2 1275 1413 -1901 358 314 162 67 chr3 177951882 177952782 -49571796 + L2 LINE L2 1890 2875 -439 219 36 0 0 chr3 177952842 177952870 -49571708 + (TC)n Simple_repeat Simple_repeat 1 28 0 921 219 0 0 chr3 177952872 177953027 -49571551 - FAM SINE Alu -19 156 2 24 0 0 0 chr3 177953027 177953051 -49571527 + AT_rich Low_complexity Low_complexity 1 24 0 293 300 146 0 chr3 177953056 177953166 -49571412 + L2 LINE L2 3182 3307 -6 2259 93 3 22 chr3 177953199 177953511 -49571067 + AluSc SINE Alu 1 306 -3 1823 171 58 16 chr3 177954204 177954584 -49569994 + MSTB LTR MaLR 4 399 -27 2270 109 3 6 chr3 177954601 177954913 -49569665 - AluSx SINE Alu -1 311 1 246 136 0 0 chr3 177955016 177955060 -49569518 + (TA)n Simple_repeat Simple_repeat 2 45 0 1954 129 7 0 chr3 177955273 177955552 -49569026 - AluSq SINE Alu -30 283 3 1004 191 68 141 chr3 177955659 177956215 -49568363 + MER39 LTR ERV1 5 707 0 215 303 34 34 chr3 177956575 177956664 -49567914 + MIR SINE MIR 168 256 -6 396 326 145 7 chr3 177956796 177957100 -49567478 + L2 LINE L2 2164 2509 -805 328 319 256 21 chr3 177957263 177957646 -49566932 + L2 LINE L2 2841 3313 0 460 296 107 10 chr3 177960852 177960900 -49563678 + L2 LINE L2 3098 3140 -173 354 61 0 0 chr3 177960900 177960949 -49563629 + (CA)n Simple_repeat Simple_repeat 1 49 0 460 296 107 10 chr3 177960949 177961096 -49563482 + L2 LINE L2 3140 3312 -1 1759 150 27 3 chr3 177961126 177961420 -49563158 + AluSx SINE Alu 1 301 -11 575 270 13 25 chr3 177962436 177962595 -49561983 + MIR SINE MIR 80 236 -26 382 221 110 43 chr3 177963321 177963734 -49560844 - MLT1L LTR MaLR -7 608 101 252 122 0 0 chr3 177963793 177963834 -49560744 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2243 95 10 3 chr3 177963953 177964247 -49560331 + AluSp SINE Alu 1 296 -17 833 191 83 68 chr3 177964272 177964550 -49560028 + MER5C DNA MER1_type 29 310 -14 21 0 0 0 chr3 177964702 177964723 -49559855 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 177966491 177966512 -49558066 + AT_rich Low_complexity Low_complexity 1 21 0 1735 158 7 10 chr3 177966665 177966962 -49557616 + AluJb SINE Alu 1 296 -16 2005 138 165 5 chr3 177967223 177967592 -49556986 + MSTA LTR MaLR 1 428 0 239 273 140 28 chr3 177967898 177968041 -49556537 - L2 LINE L2 -542 2772 2614 701 145 0 0 chr3 177968950 177969067 -49555511 + L1M1 LINE L1 2930 3046 -4519 923 112 12 12 chr3 177969070 177969231 -49555347 + L1MA4 LINE L1 6139 6299 -1 22 35 0 0 chr3 177969231 177969260 -49555318 + AT_rich Low_complexity Low_complexity 1 29 0 786 262 13 22 chr3 177969515 177969740 -49554838 - MIR SINE MIR 0 262 40 1338 150 0 0 chr3 177969898 177970125 -49554453 + MLT2B1 LTR ERVL 1 227 -293 995 220 72 57 chr3 177970282 177970429 -49554149 + MLT1F LTR MaLR 41 184 -383 2205 127 3 0 chr3 177970429 177970736 -49553842 - AluSx SINE Alu -4 308 1 995 220 72 57 chr3 177970736 177971027 -49553551 + MLT1F LTR MaLR 184 559 -8 504 226 61 17 chr3 177971185 177971300 -49553278 + L2 LINE L2 3193 3312 -1 221 287 85 21 chr3 177971425 177971519 -49553059 - MIR3 SINE MIR -36 172 73 1978 141 0 0 chr3 177971808 177972125 -49552453 + AluSx SINE Alu 1 317 0 912 233 0 0 chr3 177972689 177972861 -49551717 - FAM SINE Alu -3 172 1 1451 143 70 23 chr3 177972966 177973224 -49551354 - AluJb SINE Alu -14 298 29 2033 189 16 43 chr3 177973226 177973719 -49550859 - MER74A LTR ERVL -78 480 1 479 256 22 57 chr3 177974388 177974529 -49550049 + MLT1F1 LTR MaLR 1 137 -446 30 0 0 0 chr3 177975191 177975221 -49549357 + AT_rich Low_complexity Low_complexity 1 30 0 425 337 85 23 chr3 177976042 177976659 -49547919 - L2 LINE L2 -1 3312 2574 2348 85 0 0 chr3 177977184 177977478 -49547100 + AluY SINE Alu 1 294 -17 279 259 108 12 chr3 177978212 177978282 -49546296 + L1MC4 LINE L1 5355 5417 -749 1949 113 0 0 chr3 177978282 177978538 -49546040 + AluSx SINE Alu 40 295 -17 279 259 108 12 chr3 177978538 177978857 -49545721 + L1MC4 LINE L1 5417 5544 -622 190 270 68 14 chr3 177980084 177980158 -49544420 - MIR SINE MIR -8 254 177 * 506 319 83 24 chr3 177980144 177980517 -49544061 + L2 LINE L2 471 865 -2449 314 283 0 22 chr3 177980582 177980674 -49543904 + L1MC4 LINE L1 6614 6703 -1339 603 217 8 8 chr3 177980685 177980805 -49543773 - FLAM_C SINE Alu -23 120 1 3054 287 226 15 chr3 177980838 177982634 -49541944 + L2 LINE L2 895 3070 -243 1720 178 26 7 chr3 177982641 177982945 -49541633 + AluJb SINE Alu 1 310 -2 441 278 82 46 chr3 177983279 177983585 -49540993 + L1M4 LINE L1 3102 3418 -2728 538 280 140 0 chr3 177984845 177985031 -49539547 - MIR SINE MIR -31 231 20 29 0 0 0 chr3 177985180 177985209 -49539369 + AT_rich Low_complexity Low_complexity 1 29 0 2089 121 7 0 chr3 177985212 177985510 -49539068 + AluY SINE Alu 1 300 -11 215 372 80 9 chr3 177985600 177985713 -49538865 - L2 LINE L2 -1 3271 3151 495 289 74 45 chr3 177986616 177987129 -49537449 + L1M4 LINE L1 3798 4325 -1821 1405 222 111 8 chr3 177987295 177987682 -49536896 + L1MEc LINE L1 35 461 -5935 24 85 0 0 chr3 177988803 177988862 -49535716 + AT_rich Low_complexity Low_complexity 1 59 0 1713 196 10 10 chr3 177989475 177989651 -49534927 - AluJb SINE Alu 0 312 134 2295 94 19 0 chr3 177989651 177989958 -49534620 - AluSq SINE Alu 0 313 1 1713 196 10 10 chr3 177989958 177990093 -49534485 - AluJb SINE Alu -177 135 1 300 27 0 0 chr3 177991252 177991289 -49533289 + tRNA-Glu-GAG tRNA tRNA 1 37 -38 1681 165 9 53 chr3 177992331 177992653 -49531925 + AluJo SINE Alu 1 308 -4 2152 119 3 0 chr3 177992819 177993121 -49531457 - AluSx SINE Alu -7 305 3 224 318 56 63 chr3 177993778 177993904 -49530674 + L2 LINE L2 3143 3267 -5 792 246 28 23 chr3 177994595 177994810 -49529768 - MER58A DNA MER1_type -8 216 1 478 248 50 50 chr3 177994902 177995063 -49529515 - MIR SINE MIR -50 212 52 1038 259 96 27 chr3 177995075 177995450 -49529128 + MLT1J2 LTR MaLR 4 404 -46 466 271 106 48 chr3 177996100 177996494 -49528084 - L1ME LINE L1 -239 5882 5452 198 0 0 0 chr3 177997053 177997075 -49527503 + (TG)n Simple_repeat Simple_repeat 2 23 0 2183 102 0 62 chr3 177997744 177998069 -49526509 + AluSx SINE Alu 1 305 -7 2177 126 3 0 chr3 177998572 177998873 -49525705 + AluSx SINE Alu 1 302 -10 1713 181 4 0 chr3 177999258 177999524 -49525054 + AluJb SINE Alu 1 267 -45 211 200 0 0 chr3 178000208 178000248 -49524330 + (CATTT)n Simple_repeat Simple_repeat 3 42 0 500 299 58 0 chr3 178001078 178001232 -49523346 + MIR SINE MIR 23 185 -77 481 296 60 64 chr3 178001707 178001940 -49522638 + HAL1 LINE L1 2245 2476 -31 298 284 67 41 chr3 178001958 178002300 -49522278 + L1M4 LINE L1 4368 4718 -1428 333 287 51 19 chr3 178002855 178003012 -49521566 + L2 LINE L2 2592 2753 -561 216 0 0 0 chr3 178003012 178003036 -49521542 + (T)n Simple_repeat Simple_repeat 1 24 0 349 335 155 18 chr3 178003097 178003381 -49521197 + L2 LINE L2 2943 3265 -7 289 235 12 62 chr3 178003970 178004051 -49520527 - MIR SINE MIR -76 186 110 225 182 0 0 chr3 178006498 178006542 -49518036 + (CA)n Simple_repeat Simple_repeat 2 45 0 862 248 48 0 chr3 178007453 178007659 -49516919 + MIR SINE MIR 1 216 -46 182 316 0 0 chr3 178008745 178008783 -49515795 + L2 LINE L2 3256 3293 -20 453 197 71 49 chr3 178009086 178009269 -49515309 - MER53 DNA DNA 0 189 3 220 260 110 31 chr3 178009307 178009434 -49515144 + MIR SINE MIR 113 249 -13 550 268 141 9 chr3 178009670 178009883 -49514695 - MIR SINE MIR -2 260 20 29 0 0 0 chr3 178010032 178010061 -49514517 + AT_rich Low_complexity Low_complexity 1 29 0 2391 79 0 0 chr3 178010064 178010354 -49514224 + AluSg SINE Alu 1 290 -20 460 262 67 75 chr3 178010536 178011147 -49513431 + L1ME4a LINE L1 5515 6120 -1 813 268 29 21 chr3 178011251 178011490 -49513088 - MIR SINE MIR -7 255 15 296 285 19 63 chr3 178012518 178012676 -49511902 - MIR SINE MIR -67 195 45 257 350 36 46 chr3 178014561 178014867 -49509711 - L3b LINE CR1 -66 1517 1215 302 271 0 0 chr3 178014956 178015026 -49509552 + L2 LINE L2 3195 3264 -49 264 289 67 35 chr3 178015530 178015659 -49508919 + MIR SINE MIR 28 155 -74 573 230 8 0 chr3 178015697 178015823 -49508755 - MER45A DNA AcHobo 0 178 52 284 229 14 0 chr3 178016020 178016090 -49508488 + L1MC4 LINE L1 7848 7918 -124 219 286 16 0 chr3 178016226 178016289 -49508289 + L2 LINE L2 3190 3253 -60 475 157 35 26 chr3 178018398 178018513 -49506065 + L1M1 LINE L1 22 137 -7428 * 8889 132 98 18 chr3 178018507 178020147 -49504431 + L1M1 LINE L1 1105 2875 -4690 187 242 198 33 chr3 178020148 178020239 -49504339 + MIR3 SINE MIR 64 169 -39 349 169 270 0 chr3 178020798 178020887 -49503691 - MER5A DNA MER1_type -30 159 47 241 257 195 18 chr3 178021095 178021208 -49503370 + MIR SINE MIR 11 143 -119 819 87 0 0 chr3 178021901 178022005 -49502573 + AluSc SINE Alu 190 293 -16 246 262 56 103 chr3 178022344 178022409 -49502169 - MER5B DNA MER1_type 0 178 120 306 73 0 0 chr3 178022409 178022450 -49502128 + (TGGA)n Simple_repeat Simple_repeat 4 44 0 246 262 56 103 chr3 178022450 178022510 -49502068 - MER5B DNA MER1_type -58 120 59 207 0 0 0 chr3 178022515 178022538 -49502040 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 263 196 0 0 chr3 178022661 178022712 -49501866 + MIR SINE MIR 110 160 -102 2114 39 29 84 chr3 178022726 178023035 -49501543 - AluY SINE Alu -19 292 1 264 222 0 32 chr3 178023039 178023102 -49501476 + MER5B DNA MER1_type 117 177 -1 298 211 100 0 chr3 178023158 178023248 -49501330 + L1ME4a LINE L1 6021 6119 -2 2201 129 0 0 chr3 178023284 178023595 -49500983 + AluSq SINE Alu 1 311 -2 646 165 17 91 chr3 178023849 178024025 -49500553 + MER5B DNA MER1_type 16 178 0 189 0 0 0 chr3 178024589 178024610 -49499968 + (T)n Simple_repeat Simple_repeat 1 21 0 481 270 64 147 chr3 178025173 178025499 -49499079 - L2 LINE L2 -4 3268 2970 297 318 68 17 chr3 178025591 178025767 -49498811 - L2 LINE L2 -942 2372 2188 21 0 0 0 chr3 178027907 178027928 -49496650 + AT_rich Low_complexity Low_complexity 1 21 0 282 259 86 43 chr3 178028236 178028352 -49496226 - MIR3 SINE MIR -11 197 77 2358 87 7 10 chr3 178028705 178029015 -49495563 - AluSq SINE Alu -4 309 1 315 0 0 0 chr3 178029461 178029496 -49495082 + (CA)n Simple_repeat Simple_repeat 1 35 0 332 246 164 22 chr3 178029699 178029833 -49494745 - MIR3 SINE MIR -26 182 30 203 162 0 0 chr3 178031187 178031224 -49493354 + T-rich Low_complexity Low_complexity 5 41 0 429 314 0 59 chr3 178031820 178031973 -49492605 - MIR3 SINE MIR -21 187 44 21 0 0 0 chr3 178031979 178032000 -49492578 + AT_rich Low_complexity Low_complexity 1 21 0 231 299 51 51 chr3 178032081 178032218 -49492360 + MIR SINE MIR 100 236 -26 292 240 93 71 chr3 178032622 178032835 -49491743 + MIR SINE MIR 21 237 -25 208 349 76 41 chr3 178035312 178035484 -49489094 - MIR SINE MIR -56 206 29 2354 102 0 0 chr3 178035541 178035845 -49488733 + AluSc SINE Alu 1 304 -5 1017 100 8 0 chr3 178035851 178035981 -49488597 + AluSg SINE Alu 1 131 -179 2348 79 14 0 chr3 178035985 178036275 -49488303 + AluSg SINE Alu 1 294 -16 1015 236 101 55 chr3 178036275 178036569 -49488009 + MLT1G3 LTR MaLR 4 283 -284 1987 145 78 20 chr3 178036569 178036914 -49487664 + MLT1A1 LTR MaLR 1 365 0 1015 236 101 55 chr3 178036914 178037050 -49487528 + MLT1G3 LTR MaLR 283 411 -156 1880 108 97 0 chr3 178037050 178037319 -49487259 + AluSq SINE Alu 1 295 -18 1015 236 101 55 chr3 178037319 178037392 -49487186 + MLT1G3 LTR MaLR 411 559 -8 707 182 25 0 chr3 178037731 178037852 -49486726 + MER5B DNA MER1_type 1 124 -54 321 226 80 72 chr3 178038030 178038181 -49486397 - MIR3 SINE MIR -28 180 31 4000 152 22 13 chr3 178038525 178039214 -49485364 - L1MC1 LINE L1 -270 6063 5369 4539 190 35 55 chr3 178039354 178039722 -49484856 + L1 LINE L1 4012 4386 -1760 2466 84 0 0 chr3 178039722 178040018 -49484560 + AluSg SINE Alu 1 296 -14 4539 190 35 55 chr3 178040018 178040558 -49484020 + L1 LINE L1 4386 4893 -1253 2136 114 0 3 chr3 178040558 178040847 -49483731 + AluSx SINE Alu 21 308 -4 4539 190 35 55 chr3 178040847 178041093 -49483485 + L1 LINE L1 4893 5143 -1003 2268 96 6 40 chr3 178041342 178041665 -49482913 - AluSp SINE Alu -1 312 1 1070 86 0 29 chr3 178041665 178041805 -49482773 - AluSq/x SINE Alu -176 136 1 954 217 0 58 chr3 178041807 178041971 -49482607 - AluJo SINE Alu -15 297 148 2339 99 0 0 chr3 178041971 178042273 -49482305 - AluSx SINE Alu -10 302 1 954 217 0 58 chr3 178042273 178042334 -49482244 - AluJo SINE Alu -164 148 85 2379 81 3 13 chr3 178042342 178042651 -49481927 - AluSp SINE Alu -7 306 1 324 200 17 0 chr3 178042701 178042761 -49481817 - L1ME LINE L1 -537 5584 5524 2203 209 61 43 chr3 178042829 178043295 -49481283 - L1ME3A LINE L1 -197 5973 5492 2441 62 14 0 chr3 178043295 178043587 -49480991 - AluY SINE Alu -9 302 7 2203 209 61 43 chr3 178043587 178043724 -49480854 - L1ME3A LINE L1 -678 5492 5359 1335 174 69 36 chr3 178043781 178044057 -49480521 - AluJo SINE Alu -27 285 1 2421 88 7 3 chr3 178044329 178044665 -49479913 - AluSc SINE Alu 0 337 1 21 36 0 0 chr3 178044665 178044693 -49479885 + AT_rich Low_complexity Low_complexity 1 28 0 1859 235 39 76 chr3 178044702 178045336 -49479242 - LTR9 LTR ERV1 0 612 2 403 234 58 78 chr3 178045336 178045541 -49479037 - L1MC4 LINE L1 -10 8032 7832 5712 237 15 69 chr3 178045643 178046439 -49478139 + L1M2 LINE L1 2819 3656 -3192 2180 132 0 0 chr3 178046439 178046742 -49477836 - AluSg SINE Alu -7 303 1 5712 237 15 69 chr3 178046742 178047944 -49476634 + L1M2 LINE L1 3656 4705 -2143 817 181 22 16 chr3 178047952 178048134 -49476444 + AluSp SINE Alu 1 183 -130 462 131 0 0 chr3 178048357 178048418 -49476160 - AluS SINE Alu -256 62 2 219 299 137 64 chr3 178048447 178048651 -49475927 - L2 LINE L2 -1132 2182 1964 2112 99 7 0 chr3 178048728 178049034 -49475544 - AluSq SINE Alu 0 308 1 230 201 29 29 chr3 178049388 178049457 -49475121 + MIR SINE MIR 99 166 -67 447 232 56 154 chr3 178050160 178050466 -49474112 - L1M2 LINE L1 -5898 951 676 300 289 169 29 chr3 178050997 178051270 -49473308 - L1M2 LINE L1 -5654 1195 885 270 247 93 10 chr3 178052626 178052723 -49471855 - MER104 DNA Tc2 -45 135 31 26 52 0 17 chr3 178053016 178053054 -49471524 + AT_rich Low_complexity Low_complexity 1 39 -18 1624 147 93 0 chr3 178053054 178053333 -49471245 - AluJo SINE Alu -7 305 1 26 52 0 17 chr3 178053333 178053352 -49471226 + AT_rich Low_complexity Low_complexity 39 57 0 1459 110 0 48 chr3 178053352 178053407 -49471171 - L1PB1 LINE L1 -1 6150 6094 2503 81 0 3 chr3 178053407 178053717 -49470861 - AluY SINE Alu -2 309 1 1459 110 0 48 chr3 178053717 178053889 -49470689 - L1PB1 LINE L1 -57 6094 5934 2090 124 3 34 chr3 178054679 178055001 -49469577 - AluSx SINE Alu 0 312 1 1991 147 3 0 chr3 178055013 178055313 -49469265 - AluSx SINE Alu -11 301 1 22 0 0 0 chr3 178055763 178055785 -49468793 + AT_rich Low_complexity Low_complexity 1 22 0 229 217 0 0 chr3 178056184 178056230 -49468348 - L1MC4 LINE L1 -432 7610 7565 21 0 0 0 chr3 178056401 178056422 -49468156 + AT_rich Low_complexity Low_complexity 1 21 0 2394 41 7 7 chr3 178056428 178056720 -49467858 - AluY SINE Alu -19 292 1 2414 88 0 3 chr3 178056724 178057029 -49467549 - AluSq SINE Alu -9 304 1 1815 204 95 68 chr3 178057105 178057675 -49466903 - MER77 LTR ERV1 -4 601 62 1773 171 7 0 chr3 178057777 178058075 -49466503 + AluJo SINE Alu 1 300 -12 1009 239 93 83 chr3 178058089 178058555 -49466023 - L1MC4 LINE L1 -32 8010 7537 2424 69 0 3 chr3 178058555 178058859 -49465719 + AluY SINE Alu 1 303 -8 1009 239 93 83 chr3 178058859 178058907 -49465671 - L1MC4 LINE L1 -505 7537 7491 2143 57 0 4 chr3 178059158 178059421 -49465157 + AluY SINE Alu 50 311 0 5852 149 38 22 chr3 178059434 178059650 -49464928 - L1M2 LINE L1 -498 6753 6542 1802 178 0 3 chr3 178059650 178059942 -49464636 - AluJb SINE Alu -21 291 1 5852 149 38 22 chr3 178059942 178060140 -49464438 - L1M2 LINE L1 -709 6542 6349 420 20 0 0 chr3 178060140 178060189 -49464389 + (TA)n Simple_repeat Simple_repeat 2 50 0 5852 149 38 22 chr3 178060189 178061218 -49463360 - L1M2 LINE L1 -902 6349 5281 2137 151 0 0 chr3 178061218 178061523 -49463055 - AluSx SINE Alu -7 305 1 5852 149 38 22 chr3 178061523 178061592 -49462986 - L1M2 LINE L1 -1970 5281 5215 973 53 0 0 chr3 178061601 178061714 -49462864 - AluY SINE Alu -198 113 1 3429 218 26 48 chr3 178061717 178062111 -49462467 - L1M2 LINE L1 -1869 5237 4836 1741 192 0 13 chr3 178062111 178062419 -49462159 - AluJb SINE Alu -8 304 1 3429 218 26 48 chr3 178062419 178063165 -49461413 - L1M2 LINE L1 -2270 4836 1229 1370 169 19 30 chr3 178063165 178063431 -49461147 - L1M2 LINE L1 -6686 344 82 260 133 22 0 chr3 178063468 178063513 -49461065 - L1ME LINE L1 -304 5817 5772 2074 128 10 0 chr3 178063539 178063837 -49460741 + AluSx SINE Alu 1 301 -11 1592 181 13 16 chr3 178064176 178064479 -49460099 - AluJb SINE Alu -10 302 1 187 254 34 34 chr3 178065396 178065455 -49459123 + MIR3 SINE MIR 15 73 -135 840 309 9 0 chr3 178065555 178065785 -49458793 + MIR SINE MIR 31 262 0 400 307 135 10 chr3 178065917 178066220 -49458358 + L1MEd LINE L1 133 473 -5732 239 376 0 0 chr3 178066315 178066400 -49458178 + L1MEd LINE L1 548 632 -5573 2365 94 0 0 chr3 178066432 178066729 -49457849 + AluSx SINE Alu 1 297 -15 25 0 0 0 chr3 178066947 178066972 -49457606 + AT_rich Low_complexity Low_complexity 1 25 0 23 33 0 0 chr3 178067007 178067037 -49457541 + AT_rich Low_complexity Low_complexity 1 30 0 2022 102 0 83 chr3 178067101 178067426 -49457152 + AluSg SINE Alu 1 298 -12 719 267 164 35 chr3 178067455 178068381 -49456197 + L1MEd LINE L1 1255 2347 -3868 2157 110 28 0 chr3 178068381 178068672 -49455906 + AluSx SINE Alu 1 299 -13 719 267 164 35 chr3 178068672 178068873 -49455705 + L1MEd LINE L1 2347 2521 -3694 679 72 0 0 chr3 178068875 178068958 -49455620 + L1PBa LINE L1 2398 2480 -4383 1486 28 6 0 chr3 178068958 178069135 -49455443 + L1PBa LINE L1 2416 2593 -4270 21 36 0 0 chr3 178069566 178069594 -49454984 + AT_rich Low_complexity Low_complexity 1 28 0 1985 179 22 47 chr3 178069917 178070324 -49454254 - MLT2C1 LTR ERVL 0 397 1 1709 90 0 5 chr3 178070479 178070702 -49453876 - AluSq SINE Alu -17 296 75 684 275 167 22 chr3 178070738 178071007 -49453571 + MER102b DNA MER1_type 33 340 -1 829 247 197 28 chr3 178071273 178071633 -49452945 - MLT1J2 LTR MaLR -29 421 1 183 308 0 46 chr3 178071690 178071755 -49452823 - L2 LINE L2 0 3272 3211 535 243 99 28 chr3 178071955 178072136 -49452442 - MIR SINE MIR -26 236 43 1943 137 33 7 chr3 178073437 178073736 -49450842 + AluSx SINE Alu 1 307 -5 225 217 50 33 chr3 178073766 178073826 -49450752 - L2 LINE L2 -55 3258 3198 372 361 77 30 chr3 178073998 178074413 -49450165 + L2 LINE L2 2637 3083 -189 914 183 30 106 chr3 178075091 178075326 -49449252 - MER20 DNA MER1_type 0 219 3 2272 105 7 0 chr3 178075362 178075668 -49448910 - AluSx SINE Alu -4 308 1 6145 17 0 1 chr3 178078781 178079439 -49445139 - L1PA3 LINE L1 -3 6152 5496 2033 128 10 0 chr3 178079439 178079727 -49444851 - AluSx SINE Alu -21 291 1 241 377 82 0 chr3 178079728 178079935 -49444643 + L2 LINE L2 613 836 -2478 364 315 162 66 chr3 178080612 178081511 -49443067 + L2 LINE L2 1890 2875 -439 219 36 0 0 chr3 178081571 178081599 -49442979 + (TC)n Simple_repeat Simple_repeat 1 28 0 921 219 0 0 chr3 178081601 178081756 -49442822 - FAM SINE Alu -19 156 2 24 0 0 0 chr3 178081756 178081780 -49442798 + AT_rich Low_complexity Low_complexity 1 24 0 293 300 146 0 chr3 178081785 178081895 -49442683 + L2 LINE L2 3182 3307 -6 2259 93 3 22 chr3 178081928 178082240 -49442338 + AluSc SINE Alu 1 306 -3 1842 168 58 16 chr3 178082933 178083313 -49441265 + MSTB LTR MaLR 4 399 -27 2323 108 0 6 chr3 178083326 178083640 -49440938 - AluSx SINE Alu 0 312 1 1050 150 0 0 chr3 178083743 178083981 -49440597 + (TA)n Simple_repeat Simple_repeat 1 238 0 2099 117 7 0 chr3 178084652 178084962 -49439616 - AluSx SINE Alu 0 312 1 300 323 21 0 chr3 178085291 178085387 -49439191 + MIR3 SINE MIR 78 175 -33 318 26 0 0 chr3 178086345 178086384 -49438194 + (TG)n Simple_repeat Simple_repeat 2 40 0 358 264 79 8 chr3 178086494 178086672 -49437906 + MIR SINE MIR 30 260 -2 446 324 57 33 chr3 178088183 178088437 -49436141 - MIR SINE MIR 0 262 6 288 280 93 70 chr3 178088924 178089084 -49435494 - HAL1 LINE L1 -2 2505 2350 1885 109 44 0 chr3 178089084 178089358 -49435220 - AluSx SINE Alu -26 286 1 288 280 93 70 chr3 178089358 178089711 -49434867 - HAL1 LINE L1 -157 2350 1980 573 223 99 79 chr3 178089927 178090390 -49434188 - HAL1 LINE L1 -871 1636 1032 1569 163 0 77 chr3 178090390 178090703 -49433875 - AluJo SINE Alu -19 293 5 573 223 99 79 chr3 178090703 178090904 -49433674 - HAL1 LINE L1 -1475 1032 836 1210 287 51 40 chr3 178090983 178091515 -49433063 - MLT1H LTR MaLR 0 626 12 761 269 152 53 chr3 178091515 178091583 -49432995 - HAL1 LINE L1 -1966 541 481 2164 120 0 3 chr3 178091583 178091874 -49432704 - AluSx SINE Alu -22 290 1 761 269 152 53 chr3 178091874 178092259 -49432319 - HAL1 LINE L1 -2026 481 43 2164 132 0 0 chr3 178092508 178092819 -49431759 + AluSx SINE Alu 1 311 -1 1324 176 99 4 chr3 178093343 178093605 -49430973 - AluJo SINE Alu -25 287 1 276 30 0 0 chr3 178093887 178093920 -49430658 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 317 307 128 11 chr3 178094476 178094655 -49429923 - L1ME LINE L1 -399 5722 5523 1133 179 24 14 chr3 178094719 178094926 -49429652 + AluJo SINE Alu 85 293 -19 319 207 157 16 chr3 178094931 178095052 -49429526 - L1ME LINE L1 -730 5434 5297 549 167 38 162 chr3 178096118 178096328 -49428250 - MER21B LTR ERV1 -679 184 1 1105 212 59 59 chr3 178096474 178096899 -49427679 + MER39 LTR ERV1 260 684 -23 211 370 34 0 chr3 178097009 178097128 -49427450 - MIR SINE MIR -36 226 104 328 119 48 0 chr3 178097485 178097569 -49427009 + (TCTG)n Simple_repeat Simple_repeat 2 89 0 198 71 0 0 chr3 178097571 178097599 -49426979 + (CA)n Simple_repeat Simple_repeat 1 28 0 2374 143 36 28 chr3 178098933 178099401 -49425177 + L1MB7 LINE L1 5619 6090 -94 2176 105 10 13 chr3 178099401 178099707 -49424871 - AluSp SINE Alu -8 305 1 2300 106 0 3 chr3 178099731 178100042 -49424536 - AluSx SINE Alu -2 310 1 573 111 19 9 chr3 178100043 178100151 -49424427 + L1MB7 LINE L1 6076 6184 0 225 286 18 0 chr3 178100155 178100211 -49424367 + L3 LINE CR1 1448 1504 -73 55 72 0 0 chr3 178100704 178100815 -49423763 + AT_rich Low_complexity Low_complexity 1 111 0 232 263 112 7 chr3 178101428 178101580 -49422998 + L1M4 LINE L1 2677 2844 -3302 454 296 110 38 chr3 178101610 178101928 -49422650 + L1M4 LINE L1 2941 3281 -2865 2186 108 28 0 chr3 178104084 178104372 -49420206 + AluSq SINE Alu 1 296 -17 246 279 135 9 chr3 178105019 178105130 -49419448 - MIR3 SINE MIR -43 165 41 376 336 14 7 chr3 178106426 178106566 -49418012 + MIR3 SINE MIR 57 197 -11 1007 168 48 139 chr3 178106839 178107191 -49417387 - MER58B DNA MER1_type 0 341 22 568 304 57 31 chr3 178107455 178107682 -49416896 - MIR SINE MIR -3 259 27 2505 59 0 0 chr3 178107956 178108260 -49416318 + AluY SINE Alu 1 304 -7 1192 68 0 0 chr3 178108260 178108432 -49416146 + AluY SINE Alu 133 304 0 353 212 24 0 chr3 178108876 178108961 -49415617 + MLT1L LTR MaLR 15 101 -514 1471 157 102 3 chr3 178109058 178109390 -49415188 + Charlie1 DNA MER1_type 2343 2707 -54 1277 185 4 4 chr3 178109432 178109664 -49414914 - AluJo SINE Alu -80 232 1 899 243 89 48 chr3 178109725 178109862 -49414716 + MLT1L LTR MaLR 172 302 -313 2144 100 3 39 chr3 178109862 178110171 -49414407 + AluY SINE Alu 1 298 -13 899 243 89 48 chr3 178110171 178110449 -49414129 + MLT1L LTR MaLR 302 604 -11 311 238 30 30 chr3 178110833 178110934 -49413644 - MIR3 SINE MIR -30 178 78 1972 123 0 7 chr3 178111962 178112246 -49412332 + AluSx SINE Alu 15 296 -16 184 377 18 18 chr3 178112743 178112857 -49411721 - L2 LINE L2 -401 2913 2800 1362 200 19 0 chr3 178113135 178113365 -49411213 + MLT2B3 LTR ERVL 280 517 -37 246 32 0 0 chr3 178113365 178113396 -49411182 + (TCTA)n Simple_repeat Simple_repeat 3 33 0 1362 200 19 0 chr3 178113396 178113435 -49411143 + MLT2B3 LTR ERVL 517 554 0 21 0 0 0 chr3 178113634 178113655 -49410923 + AT_rich Low_complexity Low_complexity 1 21 0 2359 92 0 0 chr3 178115561 178115856 -49408722 + AluSq SINE Alu 1 295 -18 785 234 128 0 chr3 178116290 178116508 -49408070 + MIR SINE MIR 14 259 -3 1080 222 57 66 chr3 178116540 178116873 -49407705 + MLT1A2 LTR MaLR 45 374 0 296 329 24 56 chr3 178117801 178118014 -49406564 - L3b LINE CR1 -98 1485 1280 2390 48 0 10 chr3 178118644 178118936 -49405642 - AluY SINE Alu -22 289 1 26 30 0 0 chr3 178118943 178118976 -49405602 + AT_rich Low_complexity Low_complexity 1 33 0 201 169 14 28 chr3 178119138 178119209 -49405369 + (TA)n Simple_repeat Simple_repeat 2 71 0 1076 229 100 0 chr3 178119363 178119664 -49404914 - L1MB7 LINE L1 -11 6173 5843 783 221 84 20 chr3 178119752 178120051 -49404527 + L1MC4a LINE L1 5752 6069 -1739 2068 152 36 3 chr3 178120120 178120456 -49404122 - MER7A DNA MER2_type 0 346 2 437 254 0 55 chr3 178120478 178120643 -49403935 + L1MC4 LINE L1 6624 6779 -1263 214 376 20 30 chr3 178121035 178121136 -49403442 + L2 LINE L2 3166 3265 -7 200 287 149 0 chr3 178121170 178121274 -49403304 + MIR SINE MIR 24 143 -103 1619 185 0 7 chr3 178121475 178121761 -49402817 + AluJo SINE Alu 1 284 -28 31 58 0 0 chr3 178121812 178121864 -49402714 + AT_rich Low_complexity Low_complexity 1 52 0 2331 198 63 16 chr3 178122385 178122960 -49401618 + MER41-int LTR ERV1 13 1481 -4465 302 210 37 12 chr3 178122938 178123019 -49401559 + MER41-int LTR ERV1 763 845 -5486 * 22 0 0 0 chr3 178123040 178123062 -49401516 + AT_rich Low_complexity Low_complexity 1 22 0 275 220 97 9 chr3 178123062 178123242 -49401336 + MER41-int LTR ERV1 845 1104 -5227 * 4794 176 14 31 chr3 178123211 178124174 -49400404 + MER41-int LTR ERV1 1477 2422 -3524 983 271 60 29 chr3 178124290 178124641 -49399937 + MER41-int LTR ERV1 3046 3407 -4130 249 143 20 0 chr3 178124644 178124693 -49399885 + MER34C LTR ERV1 170 219 -366 1032 160 54 67 chr3 178124744 178125104 -49399474 + MER41-int LTR ERV1 1843 2206 -3740 1821 137 32 7 chr3 178125104 178125388 -49399190 - AluJb SINE Alu -8 304 14 1032 160 54 67 chr3 178125388 178125442 -49399136 + MER41-int LTR ERV1 2206 2992 -2954 15101 173 30 16 chr3 178125445 178127739 -49396839 + L1PBa LINE L1 1 2262 -4600 2225 123 0 3 chr3 178127739 178128049 -49396529 + AluSq SINE Alu 3 311 -2 15101 173 30 16 chr3 178128049 178128780 -49395798 + L1PBa LINE L1 2262 2982 -3880 2017 107 47 3 chr3 178128780 178129078 -49395500 + AluSx SINE Alu 1 311 -1 15101 173 30 16 chr3 178129078 178129694 -49394884 + L1PBa LINE L1 2982 3588 -3274 2102 137 33 0 chr3 178129694 178129816 -49394762 + AluSq SINE Alu 1 117 -196 207 0 0 0 chr3 178129816 178129839 -49394739 + (TAAAA)n Simple_repeat Simple_repeat 2 24 0 2102 137 33 0 chr3 178129839 178130015 -49394563 + AluSq SINE Alu 117 309 -4 15101 173 30 16 chr3 178130015 178130288 -49394290 + L1PBa LINE L1 3588 3856 -3006 2232 116 10 0 chr3 178130288 178130590 -49393988 + AluSp SINE Alu 1 305 -8 15101 173 30 16 chr3 178130590 178132142 -49392436 + L1PBa LINE L1 3856 5542 -1320 2742 226 14 3 chr3 178132142 178132785 -49391793 + L1 LINE L1 4690 5339 -807 886 128 123 0 chr3 178132990 178133233 -49391345 + AluSq SINE Alu 36 308 -5 342 281 70 62 chr3 178133304 178133432 -49391146 + MIR SINE MIR 33 161 -101 2202 123 3 0 chr3 178133432 178133740 -49390838 + AluSx SINE Alu 1 309 -3 298 331 100 21 chr3 178133797 178134068 -49390510 - L2 LINE L2 -236 3036 2748 2062 138 0 10 chr3 178134124 178134429 -49390149 + AluSx SINE Alu 2 303 -9 1136 129 0 35 chr3 178134429 178134600 -49389978 + AluSg/x SINE Alu 134 298 -14 555 229 57 18 chr3 178134607 178134939 -49389639 - Charlie2a DNA MER1_type -20 2842 730 423 184 35 0 chr3 178134955 178135042 -49389536 - Charlie2a DNA MER1_type -2367 415 326 573 117 0 32 chr3 178135092 178135186 -49389392 + L1MEc LINE L1 35 125 -6271 2198 123 3 0 chr3 178135187 178135489 -49389089 + AluSq SINE Alu 1 303 -10 786 227 92 5 chr3 178135490 178135697 -49388881 + L1M4 LINE L1 3845 4069 -2077 1269 97 0 23 chr3 178135711 178135886 -49388692 + AluSq SINE Alu 135 305 -8 217 236 113 47 chr3 178135907 178136013 -49388565 - L2 LINE L2 -943 2371 2259 1001 186 0 0 chr3 178136205 178136372 -49388206 - AluJb SINE Alu -9 303 137 1470 162 57 34 chr3 178137237 178137378 -49387200 + AluJo SINE Alu 2 138 -174 2151 96 0 17 chr3 178137378 178137679 -49386899 + AluSg SINE Alu 1 296 -14 1470 162 57 34 chr3 178137679 178137833 -49386745 + AluJo SINE Alu 138 304 -8 210 253 154 22 chr3 178137841 178137932 -49386646 + MIR SINE MIR 37 139 -69 303 228 101 67 chr3 178138574 178138723 -49385855 + MIR SINE MIR 26 179 -83 2331 107 13 0 chr3 178139005 178139313 -49385265 + AluSx SINE Alu 1 312 0 340 236 0 0 chr3 178139343 178139415 -49385163 + MER116 DNA Mariner 1 72 -8 840 156 0 16 chr3 178139445 178139573 -49385005 + FLAM_C SINE Alu 1 126 -7 323 317 61 27 chr3 178139645 178139832 -49384746 + MIR3 SINE MIR 32 223 -2 180 0 0 0 chr3 178140561 178140581 -49383997 + (T)n Simple_repeat Simple_repeat 1 20 0 220 245 0 0 chr3 178141052 178141101 -49383477 + L2 LINE L2 3265 3313 0 21 0 0 0 chr3 178141221 178141242 -49383336 + AT_rich Low_complexity Low_complexity 1 21 0 2451 72 0 0 chr3 178142127 178142433 -49382145 + AluSx SINE Alu 2 307 -5 193 216 91 102 chr3 178145123 178145211 -49379367 - MIR SINE MIR -104 104 18 180 0 0 0 chr3 178145535 178145555 -49379023 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 216 0 0 0 chr3 178145691 178145715 -49378863 + (A)n Simple_repeat Simple_repeat 1 24 0 282 267 0 0 chr3 178147283 178147343 -49377235 - L2 LINE L2 -6 3307 3248 387 296 73 119 chr3 178147413 178147567 -49377011 - MLT1K LTR MaLR -3 585 425 2467 166 87 11 chr3 178147567 178148018 -49376560 - MER31A LTR ERV1 0 485 1 387 296 73 119 chr3 178148018 178148467 -49376111 - MLT1K LTR MaLR -163 425 10 2411 78 3 0 chr3 178148472 178148768 -49375810 + AluSg SINE Alu 1 297 -13 221 303 34 11 chr3 178149279 178149368 -49375210 + MIR SINE MIR 172 262 0 234 0 0 0 chr3 178149397 178149423 -49375155 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1932 102 30 0 chr3 178149433 178149698 -49374880 - AluSq SINE Alu -29 284 12 2169 103 0 3 chr3 178149746 178150058 -49374520 - AluSx SINE Alu 0 311 1 714 131 0 19 chr3 178150068 178150175 -49374403 - FLAM_A SINE Alu -19 123 19 2333 73 7 17 chr3 178150304 178150604 -49373974 + AluSq SINE Alu 1 297 -16 206 291 0 38 chr3 178151890 178151969 -49372609 - L2 LINE L2 0 3313 3238 2130 134 10 0 chr3 178152284 178152591 -49371987 + AluSg SINE Alu 1 310 0 784 223 55 5 chr3 178152710 178152912 -49371666 + MER112 DNA MER1_type 43 254 -6 2117 121 0 13 chr3 178152916 178153214 -49371364 + AluSg SINE Alu 1 294 -16 1589 178 10 45 chr3 178153222 178153531 -49371047 + AluJb SINE Alu 1 298 -14 24 32 0 0 chr3 178154248 178154279 -49370299 + AT_rich Low_complexity Low_complexity 1 31 0 1907 124 76 0 chr3 178154838 178155128 -49369450 + AluSx SINE Alu 1 312 0 2376 96 0 6 chr3 178155150 178155464 -49369114 - AluSx SINE Alu 0 312 1 1470 188 12 59 chr3 178156404 178156606 -49367972 + AluJo SINE Alu 1 184 -128 1453 197 33 53 chr3 178156606 178156906 -49367672 - AluJb SINE Alu -18 294 1 1470 188 12 59 chr3 178156906 178157027 -49367551 + AluJo SINE Alu 184 309 -3 2423 87 0 7 chr3 178157555 178157855 -49366723 + AluSx SINE Alu 1 298 -14 1701 195 3 0 chr3 178160048 178160340 -49364238 - AluJb SINE Alu -19 293 1 2019 128 7 10 chr3 178160347 178160652 -49363926 - AluSx SINE Alu -8 304 1 252 150 0 0 chr3 178161472 178161512 -49363066 - L2 LINE L2 -8 3305 3266 2319 48 0 34 chr3 178161532 178161861 -49362717 + AluY SINE Alu 1 319 0 316 250 17 17 chr3 178162119 178162239 -49362339 + (TA)n Simple_repeat Simple_repeat 2 121 0 256 289 0 13 chr3 178162428 178162504 -49362074 + MER103 DNA DNA 1 75 -91 351 297 27 9 chr3 178162512 178162623 -49361955 + L2 LINE L2 3192 3304 -9 2160 101 3 7 chr3 178162625 178162911 -49361667 + AluSx SINE Alu 1 285 -27 2228 125 3 0 chr3 178163041 178163345 -49361233 - AluSx SINE Alu -7 305 1 753 260 119 13 chr3 178163345 178163580 -49360998 - MLT1B LTR MaLR -130 260 1 1328 111 254 8 chr3 178164732 178164976 -49359602 - AluSg1 SINE Alu -5 304 1 2010 138 0 3 chr3 178165366 178165676 -49358902 + AluSx SINE Alu 1 312 0 1111 242 25 22 chr3 178165678 178165955 -49358623 - LTR43 LTR ERV1 -194 408 131 185 83 28 0 chr3 178166045 178166081 -49358497 + (TTTTTG)n Simple_repeat Simple_repeat 1 37 0 320 145 14 29 chr3 178166121 178166190 -49358388 - LTR60 LTR ERV1 -518 68 1 2256 114 3 0 chr3 178166402 178166701 -49357877 - AluSx SINE Alu -11 301 2 2149 121 0 3 chr3 178167273 178167570 -49357008 + AluSx SINE Alu 1 296 -16 1494 200 131 63 chr3 178167788 178168028 -49356550 - MER39 LTR ERV1 0 707 485 2190 113 7 0 chr3 178168028 178168319 -49356259 + AluSx SINE Alu 1 293 -19 1494 200 131 63 chr3 178168319 178168593 -49355985 - MER39 LTR ERV1 -222 485 5 2221 109 0 7 chr3 178169504 178169806 -49354772 + AluSc SINE Alu 1 300 -9 466 265 34 0 chr3 178170066 178170183 -49354395 - MLT1L LTR MaLR -74 541 421 494 260 14 14 chr3 178170187 178170333 -49354245 - AluSg/x SINE Alu -1 311 166 1616 134 0 4 chr3 178170433 178170701 -49353877 + AluSx SINE Alu 48 314 0 312 301 112 10 chr3 178170842 178171038 -49353540 - MIR SINE MIR -18 244 29 2154 113 0 16 chr3 178171355 178171664 -49352914 - AluSg SINE Alu -6 304 1 2274 99 3 3 chr3 178173052 178173354 -49351224 - AluSp SINE Alu -11 302 1 1162 123 6 0 chr3 178173354 178173524 -49351054 - AluSq SINE Alu -19 294 124 2068 116 3 23 chr3 178173769 178174070 -49350508 + AluSq SINE Alu 1 295 -18 2274 99 3 3 chr3 178174070 178174371 -49350207 + AluSp SINE Alu 1 302 -11 2142 117 0 16 chr3 178175759 178176068 -49348510 + AluSg SINE Alu 1 304 -6 312 301 112 10 chr3 178176385 178176581 -49347997 + MIR SINE MIR 29 244 -18 2083 123 0 0 chr3 178176722 178177036 -49347542 - AluSx SINE Alu 0 314 1 889 209 0 0 chr3 178177225 178177378 -49347200 - FRAM SINE Alu -10 156 4 2141 119 0 3 chr3 178177859 178178144 -49346434 + AluSx SINE Alu 5 288 -24 2191 92 7 0 chr3 178178162 178178444 -49346134 + AluSc SINE Alu 1 284 -25 33 94 0 0 chr3 178178444 178178540 -49346038 + AT_rich Low_complexity Low_complexity 1 96 0 2227 135 0 0 chr3 178179064 178179368 -49345210 - AluSx SINE Alu -8 304 1 258 275 37 18 chr3 178179587 178179696 -49344882 - L1ME LINE L1 -509 5612 5502 26 30 0 0 chr3 178179926 178179959 -49344619 + AT_rich Low_complexity Low_complexity 1 33 0 332 200 0 57 chr3 178180012 178180082 -49344496 + AluJ/FRAM SINE Alu 228 293 -9 2216 121 6 16 chr3 178180082 178180219 -49344359 + AluSx SINE Alu 1 138 -174 2301 114 3 0 chr3 178180219 178180527 -49344051 + AluSp SINE Alu 1 309 -4 2216 121 6 16 chr3 178180527 178180704 -49343874 + AluSx SINE Alu 138 312 0 2424 211 70 4 chr3 178180908 178181440 -49343138 + LTR28 LTR ERV1 1 567 -453 226 180 99 117 chr3 178181499 178181610 -49342968 + LTR27 LTR ERV1 526 634 -2 1832 130 30 47 chr3 178181856 178182155 -49342423 - AluSq SINE Alu -12 301 8 243 0 0 0 chr3 178182155 178182182 -49342396 + (TG)n Simple_repeat Simple_repeat 2 28 0 342 0 0 0 chr3 178182206 178182244 -49342334 + (TG)n Simple_repeat Simple_repeat 1 38 0 239 167 0 0 chr3 178182244 178182280 -49342298 - Alu SINE Alu -18 282 247 191 36 36 0 chr3 178182284 178182312 -49342266 + (TG)n Simple_repeat Simple_repeat 1 29 0 1621 184 0 21 chr3 178182312 178182461 -49342117 - AluJb SINE Alu -30 282 140 1523 189 45 3 chr3 178182461 178182747 -49341831 - AluSg SINE Alu -4 306 9 1621 184 0 21 chr3 178182747 178182885 -49341693 - AluJb SINE Alu -172 140 1 1504 178 18 18 chr3 178183111 178183397 -49341181 + AluJo SINE Alu 1 286 -26 203 316 167 35 chr3 178183809 178183923 -49340655 + L2 LINE L2 3143 3271 -1 360 0 0 0 chr3 178183961 178184001 -49340577 + (TG)n Simple_repeat Simple_repeat 1 40 0 210 241 207 35 chr3 178184846 178184933 -49339645 - MER91C DNA MER1_type -21 119 18 427 326 102 68 chr3 178185305 178185716 -49338862 - L2 LINE L2 0 3272 2848 1615 114 26 13 chr3 178185746 178185973 -49338605 - MER30 DNA MER1_type 0 230 1 572 260 122 52 chr3 178186036 178186363 -49338215 + L2 LINE L2 2964 3313 0 2303 109 6 0 chr3 178186396 178186707 -49337871 + AluSp SINE Alu 1 313 0 1493 157 105 21 chr3 178187690 178187976 -49336602 + AluJo SINE Alu 1 310 -2 409 220 89 62 chr3 178188050 178188224 -49336354 + L1MC5 LINE L1 7411 7596 -365 2360 77 13 7 chr3 178188224 178188524 -49336054 + AluSp SINE Alu 1 302 -11 409 220 89 62 chr3 178188524 178188608 -49335970 + L1MC5 LINE L1 7596 7676 -285 1227 244 100 64 chr3 178188614 178188636 -49335942 + L1MC4 LINE L1 7394 7414 -628 1482 166 17 0 chr3 178188636 178188877 -49335701 - AluJo SINE Alu -19 293 49 1227 244 100 64 chr3 178188877 178189058 -49335520 + L1MC4 LINE L1 7414 7587 -455 2197 116 24 0 chr3 178189058 178189352 -49335226 + AluSc SINE Alu 1 301 -8 1227 244 100 64 chr3 178189352 178189709 -49334869 + L1MC4 LINE L1 7587 7975 -67 401 318 120 103 chr3 178189863 178190485 -49334093 + L3 LINE CR1 453 1092 -485 2314 107 0 0 chr3 178190485 178190783 -49333795 - AluSx SINE Alu -14 298 1 401 318 120 103 chr3 178190783 178190963 -49333615 + L3 LINE CR1 1092 1268 -309 203 225 0 25 chr3 178191083 178191123 -49333455 - L2 LINE L2 -93 3179 3141 440 326 79 3 chr3 178191492 178191695 -49332883 + MIR SINE MIR 1 223 -39 24 0 0 0 chr3 178191711 178191735 -49332843 + AT_rich Low_complexity Low_complexity 1 24 0 369 280 153 68 chr3 178191909 178192178 -49332400 + MLT1J LTR MaLR 110 418 -93 2318 22 0 32 chr3 178192178 178192456 -49332122 - AluYb8 SINE Alu -11 307 39 369 280 153 68 chr3 178192456 178192540 -49332038 + MLT1J LTR MaLR 418 493 -18 2390 102 0 0 chr3 178192676 178192979 -49331599 + AluY SINE Alu 1 303 -8 1788 101 4 0 chr3 178192984 178193222 -49331356 + AluY SINE Alu 1 239 -72 430 130 6 3 chr3 178193222 178193376 -49331202 + AluSq SINE Alu 105 300 0 4284 142 26 11 chr3 178193376 178194101 -49330477 + L1M4c LINE L1 1163 1898 -4486 714 124 0 0 chr3 178194101 178194206 -49330372 + Tigger4(Zombi) DNA MER2_type 1 105 -2626 499 175 0 0 chr3 178194214 178194294 -49330284 + Tigger4(Zombi) DNA MER2_type 2220 2299 -432 340 114 0 0 chr3 178194293 178194337 -49330241 + Tigger4(Zombi) DNA MER2_type 2686 2729 -2 * 2296 105 0 0 chr3 178194346 178194642 -49329936 - AluSx SINE Alu -15 297 2 2045 134 3 3 chr3 178194656 178194955 -49329623 - AluSx SINE Alu -13 299 1 4018 214 38 107 chr3 178194957 178195118 -49329460 + L1M4c LINE L1 1897 2068 -4314 2350 83 7 0 chr3 178195118 178195418 -49329160 - AluSp SINE Alu -11 302 1 4018 214 38 107 chr3 178195418 178195646 -49328932 + L1M4c LINE L1 2068 2310 -4072 1755 142 52 0 chr3 178195646 178195963 -49328615 + AluSx SINE Alu 1 331 0 4018 214 38 107 chr3 178195963 178196947 -49327631 + L1M4c LINE L1 2310 3360 -3022 1574 167 4 8 chr3 178196947 178197204 -49327374 + AluJb SINE Alu 3 258 -54 4018 214 38 107 chr3 178197204 178197731 -49326847 + L1M4c LINE L1 3360 3922 -2460 2274 108 0 13 chr3 178197731 178198036 -49326542 + AluSx SINE Alu 1 301 -11 4018 214 38 107 chr3 178198036 178198392 -49326186 + L1M4c LINE L1 3922 4301 -2081 1669 157 13 52 chr3 178198392 178198534 -49326044 - AluJo SINE Alu -19 293 168 2176 109 3 10 chr3 178198534 178198838 -49325740 - AluSx SINE Alu -10 302 1 1669 157 13 52 chr3 178198838 178199000 -49325578 - AluJo SINE Alu -144 168 1 4018 214 38 107 chr3 178199000 178199096 -49325482 + L1M4c LINE L1 4301 4071 -2311 2644 51 0 0 chr3 178199096 178199407 -49325171 + AluY SINE Alu 1 311 0 4018 214 38 107 chr3 178199407 178199519 -49325059 + L1M4c LINE L1 4070 4188 -2194 2268 193 32 42 chr3 178199663 178199761 -49324817 + L1MB3 LINE L1 5520 5617 -566 1754 130 18 18 chr3 178199761 178200045 -49324533 + AluSx SINE Alu 24 307 -5 2268 193 32 42 chr3 178200045 178200450 -49324128 + L1MB3 LINE L1 5617 6018 -165 2237 94 3 3 chr3 178200450 178200759 -49323819 - AluSq SINE Alu 0 309 1 231 217 0 0 chr3 178201536 178201596 -49322982 + (TA)n Simple_repeat Simple_repeat 1 60 0 2426 91 0 0 chr3 178201992 178202299 -49322279 + AluY SINE Alu 1 307 -4 2240 105 0 3 chr3 178202308 178202602 -49321976 + AluSx SINE Alu 1 293 -19 2280 100 3 0 chr3 178202604 178202905 -49321673 + AluSq SINE Alu 1 302 -11 354 283 0 11 chr3 178203103 178203195 -49321383 - L2 LINE L2 0 3313 3223 935 252 123 66 chr3 178203239 178203783 -49320795 + L2 LINE L2 1942 2516 -798 1581 178 10 7 chr3 178203877 178204170 -49320408 + AluJo SINE Alu 1 294 -18 1103 168 36 44 chr3 178204174 178204448 -49320130 + AluJo SINE Alu 38 309 -3 2208 122 0 0 chr3 178205545 178205841 -49318737 + AluSx SINE Alu 1 296 -16 623 184 88 0 chr3 178205964 178206089 -49318489 + MER3 DNA MER1_type 73 208 -1 276 196 0 0 chr3 178206049 178206095 -49318483 - MER3 DNA MER1_type -121 88 43 * 2217 112 0 3 chr3 178206245 178206549 -49318029 + AluY SINE Alu 1 303 -8 741 222 51 56 chr3 178206583 178206817 -49317761 - MIR SINE MIR -24 238 6 2252 107 0 10 chr3 178207541 178207841 -49316737 + AluSp SINE Alu 1 297 -16 751 344 47 30 chr3 178208037 178208566 -49316012 + L2 LINE L2 606 1143 -2171 326 122 0 95 chr3 178208586 178208616 -49315962 - Charlie8 DNA MER1_type -172 169 138 2346 94 0 0 chr3 178208616 178208925 -49315653 + AluSp SINE Alu 1 309 -4 326 122 0 95 chr3 178208925 178208968 -49315610 - Charlie8 DNA MER1_type -203 138 103 1413 113 15 5 chr3 178209073 178209300 -49315278 + AluSq SINE Alu 79 307 0 622 307 69 87 chr3 178209328 178209840 -49314738 + L2 LINE L2 2769 3270 -2 490 288 45 35 chr3 178209968 178210314 -49314264 + L1MEc LINE L1 1748 2040 -4177 2253 111 0 0 chr3 178210423 178210730 -49313848 + AluSg1 SINE Alu 1 307 -2 1483 185 24 112 chr3 178210960 178211458 -49313120 + MER65C LTR ERV1 1 454 -7 2235 88 0 30 chr3 178211636 178211941 -49312637 - AluSq SINE Alu -17 296 1 337 242 0 0 chr3 178212592 178212654 -49311924 - AluJ/FLAM SINE Alu -240 62 1 2587 27 10 0 chr3 178212658 178212956 -49311622 - AluYa5 SINE Alu -10 301 1 260 305 57 50 chr3 178213066 178213422 -49311156 + HAL1b LINE L1 311 396 -952 185 0 0 39 chr3 178213584 178213610 -49310968 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 19232 137 42 22 chr3 178214092 178214136 -49310442 - L1M1 LINE L1 -4347 3218 3176 2236 107 0 16 chr3 178214136 178214453 -49310125 - AluSx SINE Alu 0 312 1 19232 137 42 22 chr3 178214453 178217544 -49307034 - L1M1 LINE L1 -4389 3176 19 2678 222 31 45 chr3 178217553 178217790 -49306788 - L1 LINE L1 -1007 5139 4900 2064 128 0 3 chr3 178217790 178218079 -49306499 - AluSx SINE Alu -4 308 21 2678 222 31 45 chr3 178218079 178218616 -49305962 - L1 LINE L1 -1246 4900 4376 2438 84 0 3 chr3 178218617 178218916 -49305662 - AluSx SINE Alu -14 298 1 354 367 105 46 chr3 178218930 178219235 -49305343 + L2 LINE L2 2940 3262 -10 * 469 252 25 34 chr3 178219209 178219328 -49305250 - L2 LINE L2 -2 3311 3194 242 196 0 54 chr3 178219439 178219495 -49305083 - L1M4c LINE L1 -4320 2064 2012 2350 83 7 0 chr3 178219495 178219795 -49304783 + AluSp SINE Alu 1 302 -11 579 116 13 56 chr3 178219806 178219956 -49304622 - L1M4c LINE L1 -4359 2025 1824 2045 134 3 3 chr3 178219958 178220257 -49304321 + AluSx SINE Alu 1 299 -13 2061 142 3 6 chr3 178220272 178220583 -49303995 + AluSx SINE Alu 3 312 0 2324 85 3 3 chr3 178221194 178221489 -49303089 + AluSp SINE Alu 1 295 -18 1200 81 0 7 chr3 178221644 178221792 -49302786 + AluSq/x SINE Alu 1 147 -165 247 130 0 0 chr3 178221796 178221842 -49302736 + Alu SINE Alu 257 302 0 2127 143 3 0 chr3 178222068 178222376 -49302202 + AluSg SINE Alu 1 309 -1 1742 235 130 42 chr3 178223719 178224429 -49300149 + L1MC4 LINE L1 7261 8032 -10 1843 235 39 76 chr3 178224429 178225063 -49299515 + LTR9 LTR ERV1 2 612 0 21 36 0 0 chr3 178225072 178225100 -49299478 + AT_rich Low_complexity Low_complexity 1 28 0 2429 93 0 3 chr3 178225100 178225440 -49299138 + AluSc SINE Alu 1 339 0 1335 174 69 36 chr3 178225712 178225988 -49298590 + AluJo SINE Alu 1 285 -27 2203 210 62 37 chr3 178226045 178226178 -49298400 + L1ME3A LINE L1 5359 5487 -683 2460 64 14 0 chr3 178226178 178226474 -49298104 + AluY SINE Alu 3 302 -9 2203 210 62 37 chr3 178226474 178226940 -49297638 + L1ME3A LINE L1 5487 5973 -197 324 200 17 0 chr3 178227008 178227068 -49297510 + L1ME LINE L1 5524 5584 -537 2165 92 7 10 chr3 178227118 178227412 -49297166 + AluSx SINE Alu 1 293 -19 21 0 0 0 chr3 178227418 178227439 -49297139 + AT_rich Low_complexity Low_complexity 1 21 0 229 217 0 0 chr3 178227610 178227656 -49296922 + L1MC4 LINE L1 7565 7610 -432 562 174 0 0 chr3 178227833 178227919 -49296659 - AluS SINE Alu -225 87 2 2237 98 3 16 chr3 178227992 178228297 -49296281 - AluSp SINE Alu -11 302 2 195 359 23 38 chr3 178228504 178228635 -49295943 + L3 LINE CR1 852 980 -597 262 327 89 73 chr3 178228666 178228788 -49295790 + L3 LINE CR1 961 1080 -497 2342 104 0 0 chr3 178228788 178229086 -49295492 - AluSx SINE Alu -14 298 1 262 327 89 73 chr3 178229086 178229266 -49295312 + L3 LINE CR1 1080 1268 -309 203 225 0 25 chr3 178229386 178229426 -49295152 - L2 LINE L2 -93 3179 3141 440 326 79 3 chr3 178229795 178229998 -49294580 + MIR SINE MIR 1 223 -39 24 0 0 0 chr3 178230014 178230038 -49294540 + AT_rich Low_complexity Low_complexity 1 24 0 408 279 149 68 chr3 178230211 178230481 -49294097 + MLT1J LTR MaLR 110 417 -94 2316 22 0 32 chr3 178230481 178230759 -49293819 - AluYb8 SINE Alu -11 307 39 408 279 149 68 chr3 178230759 178230843 -49293735 + MLT1J LTR MaLR 417 493 -18 2370 101 0 0 chr3 178230979 178231285 -49293293 + AluSc SINE Alu 1 306 -3 1017 100 8 0 chr3 178231291 178231421 -49293157 + AluSg SINE Alu 1 131 -179 2366 79 14 0 chr3 178231425 178231717 -49292861 + AluSg SINE Alu 1 296 -14 1032 231 88 50 chr3 178231717 178232011 -49292567 + MLT1G3 LTR MaLR 4 285 -305 1987 145 78 20 chr3 178232011 178232356 -49292222 + MLT1A1 LTR MaLR 1 365 0 1032 231 88 50 chr3 178232356 178232492 -49292086 + MLT1G3 LTR MaLR 285 414 -176 1871 108 97 0 chr3 178232492 178232760 -49291818 + AluSq SINE Alu 1 294 -19 1032 231 88 50 chr3 178232760 178232840 -49291738 + MLT1G3 LTR MaLR 414 590 0 707 182 25 0 chr3 178233171 178233292 -49291286 + MER5B DNA MER1_type 1 124 -54 321 226 80 72 chr3 178233470 178233621 -49290957 - MIR3 SINE MIR -28 180 31 4289 165 45 25 chr3 178233965 178234681 -49289897 - L1MC1 LINE L1 -270 6063 5363 270 81 0 0 chr3 178234681 178234718 -49289860 + (TTCA)n Simple_repeat Simple_repeat 3 39 0 1703 193 0 3 chr3 178234718 178235003 -49289575 - AluJb SINE Alu -28 284 1 4289 165 45 25 chr3 178235003 178235056 -49289522 - L1MC1 LINE L1 -970 5363 5313 198 0 0 0 chr3 178235056 178235078 -49289500 + (TTGG)n Simple_repeat Simple_repeat 2 23 0 1801 167 0 7 chr3 178235081 178235375 -49289203 - AluSx SINE Alu -20 292 1 4289 165 45 25 chr3 178235375 178235529 -49289049 - L1MC1 LINE L1 -1021 5312 5131 2296 104 0 7 chr3 178235637 178235936 -49288642 + AluSx SINE Alu 1 297 -15 241 290 14 0 chr3 178236675 178236744 -49287834 + MLT1K LTR MaLR 36 105 -483 744 275 137 64 chr3 178236747 178237184 -49287394 + MLT1K LTR MaLR 4 472 -4 245 303 17 59 chr3 178237211 178237330 -49287248 + MIR3 SINE MIR 5 118 -90 831 195 0 0 chr3 178237675 178237824 -49286754 + AluSg/x SINE Alu 130 278 -32 243 0 0 0 chr3 178237826 178237853 -49286725 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 429 322 17 40 chr3 178238755 178238932 -49285646 + MIR3 SINE MIR 31 203 -5 21 0 0 0 chr3 178238980 178239001 -49285577 + AT_rich Low_complexity Low_complexity 1 21 0 328 307 145 6 chr3 178239855 178240021 -49284557 - L1M4 LINE L1 -2368 3778 3590 1349 299 116 15 chr3 178240029 178240393 -49284185 - L1M4 LINE L1 -2606 3540 3214 1810 171 0 10 chr3 178240393 178240691 -49283887 - AluJb SINE Alu -17 295 1 1803 168 30 7 chr3 178240693 178240990 -49283588 - AluJo SINE Alu -8 304 1 1349 299 116 15 chr3 178240990 178241465 -49283113 - L1M4 LINE L1 -2932 3214 2788 2267 154 67 5 chr3 178241465 178241868 -49282710 - MSTA LTR MaLR 0 428 1 10126 162 10 14 chr3 178241868 178243526 -49281052 - MSTA-int LTR MaLR 0 1651 1 1949 178 116 13 chr3 178243526 178243914 -49280664 - MSTA LTR MaLR 0 428 1 1349 299 116 15 chr3 178243914 178244072 -49280506 - L1M4 LINE L1 -3357 2789 2436 2215 84 3 17 chr3 178244103 178244399 -49280179 - L1PB1 LINE L1 -2 6149 5858 1974 14 0 0 chr3 178244399 178244609 -49279969 + L1PA5 LINE L1 5938 6148 -6 6327 159 8 12 chr3 178244786 178244888 -49279690 - L1PB1 LINE L1 -278 5873 5772 2133 120 28 0 chr3 178244888 178245179 -49279399 - AluSg SINE Alu -11 299 1 6327 159 8 12 chr3 178245179 178246851 -49277727 - L1PB1 LINE L1 -379 5772 4104 2130 128 3 0 chr3 178246851 178247147 -49277431 + AluSx SINE Alu 1 297 -15 6327 159 8 12 chr3 178247147 178247212 -49277366 - L1PB1 LINE L1 -2047 4104 4040 2172 128 0 0 chr3 178247515 178247811 -49276767 + AluSx SINE Alu 1 296 -16 2295 83 0 10 chr3 178248053 178248376 -49276202 + AluSq SINE Alu 2 321 0 1036 189 12 0 chr3 178248725 178248889 -49275689 - FAM SINE Alu -9 166 1 325 271 82 87 chr3 178248927 178248991 -49275587 + MER102b DNA MER1_type 107 170 -1258 2296 100 0 0 chr3 178248991 178249290 -49275288 + AluY SINE Alu 2 300 -11 325 271 82 87 chr3 178249290 178249432 -49275146 + MER102b DNA MER1_type 170 312 -29 1975 151 0 6 chr3 178249493 178249804 -49274774 - AluSx SINE Alu -3 309 1 2112 120 0 0 chr3 178250215 178250543 -49274035 + AluSx SINE Alu 1 328 0 297 0 0 0 chr3 178251096 178251129 -49273449 + (TA)n Simple_repeat Simple_repeat 1 33 0 2130 121 13 10 chr3 178251129 178251436 -49273142 - AluSx SINE Alu -2 310 3 21 82 0 0 chr3 178251544 178251593 -49272985 + AT_rich Low_complexity Low_complexity 1 49 0 984 174 0 0 chr3 178251996 178252151 -49272427 - AluJb SINE Alu -11 301 147 216 316 40 0 chr3 178252848 178252924 -49271654 - MIR SINE MIR -70 192 114 2174 107 3 7 chr3 178253125 178253425 -49271153 - AluSq SINE Alu -14 299 1 2282 93 3 7 chr3 178253695 178253997 -49270581 + AluSg SINE Alu 1 301 -9 1297 243 69 28 chr3 178254137 178254570 -49270008 + MER41E-int LTR ERV1 6226 6676 0 2419 131 50 5 chr3 178254658 178255037 -49269541 + MER41E LTR ERV1 1 396 -116 2862 91 5 10 chr3 178255037 178255218 -49269360 - LTR8 LTR ERV1 0 691 511 2257 98 3 0 chr3 178255218 178255515 -49269063 + AluSg SINE Alu 1 298 -12 2862 91 5 10 chr3 178255515 178255717 -49268861 - LTR8 LTR ERV1 -180 511 310 2304 114 3 0 chr3 178255744 178256051 -49268527 - AluSp SINE Alu 0 313 6 2125 133 0 9 chr3 178256077 178256392 -49268186 - LTR8 LTR ERV1 -379 312 1 782 158 8 0 chr3 178256392 178256511 -49268067 + MER41E LTR ERV1 393 512 0 2371 204 18 14 chr3 178256511 178257006 -49267572 + L1ME1 LINE L1 5613 6109 -57 615 95 63 11 chr3 178257006 178257101 -49267477 + L1PB1 LINE L1 6052 6151 0 2068 132 0 3 chr3 178257107 178257396 -49267182 - AluSx SINE Alu -24 288 1 1991 149 3 3 chr3 178257447 178257743 -49266835 + AluSx SINE Alu 1 296 -16 1940 159 0 7 chr3 178257743 178258045 -49266533 + AluSx SINE Alu 1 300 -12 474 303 22 11 chr3 178258045 178258223 -49266355 - MLT1H LTR MaLR -347 202 23 621 203 159 32 chr3 178258494 178258745 -49265833 - MER5C DNA MER1_type 0 324 42 235 189 168 105 chr3 178258754 178258849 -49265729 - L1MC5 LINE L1 -853 7108 7008 2065 141 0 13 chr3 178259029 178259335 -49265243 - AluSx SINE Alu -10 302 1 464 273 36 7 chr3 178260126 178260265 -49264313 + L2 LINE L2 3119 3261 -52 25 65 0 0 chr3 178260531 178260577 -49264001 + AT_rich Low_complexity Low_complexity 1 46 0 901 186 77 41 chr3 178260680 178260901 -49263677 + AluJo SINE Alu 83 311 -1 880 199 38 12 chr3 178261411 178261638 -49262940 - L1MD3 LINE L1 -13 7982 6124 769 225 12 70 chr3 178261694 178261938 -49262640 - L1MD3 LINE L1 -357 6002 5773 1239 126 0 0 chr3 178261942 178262116 -49262462 - AluSg/x SINE Alu -2 310 137 1940 143 0 0 chr3 178262346 178262619 -49261959 + AluSx SINE Alu 1 273 -39 256 296 25 25 chr3 178262630 178262711 -49261867 + MLT1G1 LTR MaLR 427 507 -88 1354 209 4 4 chr3 178263650 178263885 -49260693 - MER8 DNA MER2_type 0 239 5 5932 218 18 11 chr3 178264337 178265661 -49258917 - L1 LINE L1 -2738 3408 2070 369 0 0 0 chr3 178265661 178265702 -49258876 + (TG)n Simple_repeat Simple_repeat 2 42 0 5932 218 18 11 chr3 178265702 178265912 -49258666 - L1 LINE L1 -4076 2070 1863 454 196 65 36 chr3 178266730 178266868 -49257710 - L1ME4a LINE L1 -11 6110 5969 219 306 0 0 chr3 178266942 178267004 -49257574 + MIR SINE MIR 127 188 -74 427 155 0 0 chr3 178267058 178267129 -49257449 - L1ME4a LINE L1 -265 5856 5786 1835 158 34 0 chr3 178267316 178267613 -49256965 - AluJo SINE Alu -5 307 1 359 221 73 44 chr3 178267620 178267756 -49256822 - L1MC4a LINE L1 -1857 5951 5812 1492 134 13 9 chr3 178267895 178268127 -49256451 - MER49 LTR ERV1 -690 233 1 334 114 43 57 chr3 178268239 178268309 -49256269 - L2 LINE L2 0 3313 3245 201 297 16 0 chr3 178268414 178268478 -49256100 - L2 LINE L2 -287 2985 2921 653 240 82 0 chr3 178268795 178268941 -49255637 + MER5A DNA MER1_type 31 188 -1 295 314 20 33 chr3 178268946 178269099 -49255479 - L2 LINE L2 -798 2516 2366 184 277 0 21 chr3 178269130 178269177 -49255401 - MIR SINE MIR -63 145 100 832 281 25 0 chr3 178269240 178269436 -49255142 - L1M4 LINE L1 -5995 547 347 348 254 0 119 chr3 178269450 178269584 -49254994 + MER74B LTR ERVL 74 191 -431 1732 142 73 3 chr3 178269710 178269840 -49254738 - MLT1A1 LTR MaLR -56 309 189 1941 112 87 0 chr3 178269840 178270116 -49254462 - AluSx SINE Alu -12 300 1 1732 142 73 3 chr3 178270116 178270274 -49254304 - MLT1A1 LTR MaLR -176 189 1 2080 151 56 0 chr3 178270274 178270651 -49253927 - L1MB8 LINE L1 -235 5943 5546 1098 182 18 40 chr3 178270710 178270937 -49253641 - MLT2B3 LTR ERVL -20 515 281 2232 93 13 7 chr3 178271455 178271757 -49252821 - AluSx SINE Alu 0 312 9 927 102 31 0 chr3 178271781 178271908 -49252670 + AluSg SINE Alu 1 131 -179 2015 139 0 0 chr3 178271983 178272263 -49252315 + AluSq SINE Alu 1 280 -33 184 314 0 0 chr3 178272769 178272839 -49251739 - L2 LINE L2 -2526 788 719 200 97 0 32 chr3 178273372 178273403 -49251175 + (TA)n Simple_repeat Simple_repeat 2 31 0 460 205 116 0 chr3 178273432 178273544 -49251034 + MER106A DNA MER1_type 109 233 -3 369 211 60 40 chr3 178273855 178273987 -49250591 - L1ME1 LINE L1 -141 6023 5884 1320 181 89 10 chr3 178274170 178274463 -49250115 + L1MB7 LINE L1 5823 6138 -46 2164 119 7 0 chr3 178274465 178274760 -49249818 + AluSq SINE Alu 2 298 -15 2368 101 0 0 chr3 178274877 178275184 -49249394 - AluSx SINE Alu -5 307 1 203 171 0 24 chr3 178276596 178276637 -49247941 + CT-rich Low_complexity Low_complexity 4 43 0 2349 86 3 10 chr3 178276687 178277001 -49247577 + AluSx SINE Alu 1 312 0 431 213 28 19 chr3 178277099 178277207 -49247371 - FRAM SINE Alu -28 148 40 2205 102 20 0 chr3 178277845 178278140 -49246438 + AluSx SINE Alu 1 301 -11 187 271 0 0 chr3 178278372 178278420 -49246158 + MIR SINE MIR 104 151 -111 566 172 0 43 chr3 178278907 178279000 -49245578 + AluJ/FLAM SINE Alu 2 90 -222 383 342 37 64 chr3 178279274 178279374 -49245204 + L1MEc LINE L1 748 849 -6273 2497 152 57 2 chr3 178279374 178279776 -49244802 + MSTA LTR MaLR 1 424 -4 383 342 37 64 chr3 178279776 178280049 -49244529 + L1MEc LINE L1 849 1111 -6011 356 292 71 48 chr3 178280322 178280716 -49243862 + L1MEc LINE L1 1278 1468 -4955 1079 204 22 13 chr3 178280836 178281066 -49243512 + MER49 LTR ERV1 692 923 0 242 302 9 19 chr3 178282805 178282911 -49241667 - L2 LINE L2 -508 2806 2702 1049 255 124 31 chr3 178282940 178283555 -49241023 + L1MC4 LINE L1 7371 8042 0 521 193 0 0 chr3 178283710 178283793 -49240785 - FLAM_A SINE Alu -17 125 43 1684 138 26 36 chr3 178284052 178284213 -49240365 - AluJo SINE Alu -10 302 144 2056 138 14 0 chr3 178284213 178284509 -49240069 - AluSq SINE Alu -13 300 1 1684 138 26 36 chr3 178284509 178284652 -49239926 - AluJo SINE Alu -168 144 1 2394 91 3 0 chr3 178285303 178285610 -49238968 + AluSp SINE Alu 1 308 -5 305 56 0 56 chr3 178285648 178285702 -49238876 + L1MA7 LINE L1 6223 6273 -18 742 158 58 7 chr3 178286140 178286279 -49238299 + L1ME2 LINE L1 6018 6163 -1 1066 202 54 43 chr3 178286500 178286872 -49237706 + L1M4 LINE L1 4954 5329 -817 1267 121 0 0 chr3 178286872 178287054 -49237524 + AluSg/x SINE Alu 127 308 -2 593 99 33 0 chr3 178287054 178287145 -49237433 + L1M LINE L1 5332 5425 -755 26 30 0 0 chr3 178287857 178287890 -49236688 + AT_rich Low_complexity Low_complexity 1 33 0 2292 96 0 10 chr3 178288023 178288324 -49236254 - AluSx SINE Alu -14 298 1 2231 117 7 0 chr3 178288344 178288651 -49235927 - AluSx SINE Alu -3 309 1 32 0 0 0 chr3 178288657 178288689 -49235889 + AT_rich Low_complexity Low_complexity 1 32 0 1729 180 0 7 chr3 178288701 178288996 -49235582 + AluSx SINE Alu 6 298 -14 2204 115 0 3 chr3 178289308 178289603 -49234975 + AluSc SINE Alu 1 294 -15 1859 128 4 18 chr3 178289624 178289905 -49234673 + AluSx SINE Alu 6 282 -30 2324 94 0 3 chr3 178290466 178290765 -49233813 + AluSx SINE Alu 5 302 -10 929 230 0 0 chr3 178290768 178290929 -49233649 + AluJo/FRAM SINE Alu 137 297 -5 1070 86 0 29 chr3 178290931 178291071 -49233507 + AluSq/x SINE Alu 1 136 -176 2214 98 6 41 chr3 178291071 178291387 -49233191 + AluSp SINE Alu 1 305 -8 388 119 17 2 chr3 178291398 178291470 -49233108 + L1ME1 LINE L1 6097 6161 -5 797 130 9 0 chr3 178291879 178291994 -49232584 - AluSp/q SINE Alu -12 301 186 2173 108 0 7 chr3 178291994 178292281 -49232297 + AluSx SINE Alu 1 285 -27 28 71 0 0 chr3 178292283 178292339 -49232239 + AT_rich Low_complexity Low_complexity 1 56 0 274 247 93 10 chr3 178292632 178292729 -49231849 + MER104 DNA Tc2 31 135 -45 434 157 121 0 chr3 178294349 178294432 -49230146 + MER46A DNA MER2_type 111 203 -33 2421 100 0 0 chr3 178295653 178295962 -49228616 - AluSx SINE Alu -3 309 1 29 101 0 0 chr3 178296543 178296642 -49227936 + AT_rich Low_complexity Low_complexity 1 99 0 1803 163 28 0 chr3 178296655 178296937 -49227641 + AluJb SINE Alu 15 304 -8 180 170 191 21 chr3 178296958 178297005 -49227573 - L2 LINE L2 -33 3280 3226 521 313 47 30 chr3 178297520 178297753 -49226825 - MIR SINE MIR -12 250 14 259 246 116 0 chr3 178297803 178297872 -49226706 + MIR3 SINE MIR 118 194 -14 1154 117 12 0 chr3 178298320 178298482 -49226096 + AluSg/x SINE Alu 127 290 -20 1534 176 46 69 chr3 178298534 178298840 -49225738 - AluJb SINE Alu -3 299 1 2095 126 0 0 chr3 178299223 178299536 -49225042 - AluSx SINE Alu 0 313 1 29 101 0 0 chr3 178300117 178300216 -49224362 + AT_rich Low_complexity Low_complexity 1 99 0 1794 164 29 0 chr3 178300229 178300510 -49224068 + AluJb SINE Alu 15 303 -9 180 170 191 21 chr3 178300530 178300577 -49224001 - L2 LINE L2 -33 3280 3226 521 313 47 30 chr3 178301092 178301325 -49223253 - MIR SINE MIR -12 250 14 259 246 116 0 chr3 178301375 178301444 -49223134 + MIR3 SINE MIR 118 194 -14 252 293 44 46 chr3 178301701 178301864 -49222714 - MIR SINE MIR -61 201 40 225 0 0 0 chr3 178301912 178301937 -49222641 + (TA)n Simple_repeat Simple_repeat 2 26 0 2095 130 16 3 chr3 178301941 178302249 -49222329 - AluSx SINE Alu 0 312 1 232 238 12 62 chr3 178302294 178302374 -49222204 - L1MC5 LINE L1 -48 7913 7838 2572 4 7 0 chr3 178302433 178302748 -49221830 - AluYa5 SINE Alu 0 317 1 260 305 57 50 chr3 178302858 178303214 -49221364 + HAL1b LINE L1 311 396 -952 295 175 0 18 chr3 178303671 178303728 -49220850 - Charlie2 DNA MER1_type -20 2842 2787 238 310 111 80 chr3 178303767 178304128 -49220450 - L2 LINE L2 -52 3220 2849 382 189 0 33 chr3 178304158 178304248 -49220330 + L1MEc LINE L1 35 121 -6275 2159 102 0 27 chr3 178304253 178304547 -49220031 + AluY SINE Alu 1 286 -25 1499 184 7 31 chr3 178304560 178304853 -49219725 - AluJo SINE Alu -26 286 1 181 0 33 33 chr3 178304858 178304888 -49219690 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 899 111 0 0 chr3 178304903 178305020 -49219558 - AluSq/x SINE Alu -196 117 1 696 146 0 27 chr3 178305476 178305586 -49218992 + AluSq/x SINE Alu 2 108 -204 192 152 0 0 chr3 178305615 178305648 -49218930 + A-rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr3 178307931 178307954 -49216624 + GC_rich Low_complexity Low_complexity 1 23 0 1014 50 8 0 chr3 178308479 178308600 -49215978 + AluSp SINE Alu 1 122 -191 1858 136 7 3 chr3 178308671 178308965 -49215613 - AluY SINE Alu -16 295 1 231 217 0 0 chr3 178309361 178309421 -49215157 + (TA)n Simple_repeat Simple_repeat 1 60 0 2238 94 3 3 chr3 178310198 178310507 -49214071 + AluSq SINE Alu 1 309 0 3928 175 23 41 chr3 178310507 178310912 -49213666 - L1MB3 LINE L1 -165 6018 5607 1955 109 18 14 chr3 178310912 178311195 -49213383 - AluSx SINE Alu -5 307 24 3928 175 23 41 chr3 178311195 178311609 -49212969 - L1MB3 LINE L1 -576 5607 5219 1708 194 3 22 chr3 178311609 178311923 -49212655 - AluJo SINE Alu 0 312 5 3928 175 23 41 chr3 178311923 178312039 -49212539 - L1MB3 LINE L1 -964 5219 5102 * 15973 154 22 26 chr3 178312025 178312543 -49212035 - L1MA3 LINE L1 -1 7723 7204 1982 157 3 0 chr3 178312543 178312842 -49211736 - AluJb SINE Alu -12 300 1 15973 154 22 26 chr3 178312842 178314160 -49210418 - L1MA3 LINE L1 -520 7204 5882 2253 126 0 0 chr3 178314160 178314461 -49210117 - AluSx SINE Alu -11 301 1 15973 154 22 26 chr3 178314461 178315049 -49209529 - L1MA3 LINE L1 -1842 5882 5293 2057 123 20 0 chr3 178315049 178315341 -49209237 - AluSx SINE Alu -14 298 1 15973 154 22 26 chr3 178315341 178316288 -49208290 - L1MA3 LINE L1 -2431 5293 4344 2199 122 0 0 chr3 178316288 178316576 -49208002 - AluSx SINE Alu -24 288 1 15973 154 22 26 chr3 178316576 178316758 -49207820 - L1MA3 LINE L1 -3380 4344 4163 2166 123 0 19 chr3 178316758 178317076 -49207502 - AluSx SINE Alu 0 312 1 15973 154 22 26 chr3 178317076 178317938 -49206640 - L1MA3 LINE L1 -3561 4163 3326 2057 123 20 0 chr3 178317955 178318247 -49206331 + AluSx SINE Alu 1 298 -14 425 95 40 0 chr3 178318255 178318329 -49206249 + L1 LINE L1 3890 3966 -2180 824 273 140 49 chr3 178368359 178368931 -49155647 + HAL1 LINE L1 226 849 -1658 2031 142 7 0 chr3 178369106 178369402 -49155176 - AluSx SINE Alu -14 298 1 2375 100 0 0 chr3 178369519 178369828 -49154750 - AluY SINE Alu -2 309 1 2092 116 0 20 chr3 178370347 178370650 -49153928 - AluSc SINE Alu -12 297 1 2126 127 0 16 chr3 178370811 178370987 -49153591 - AluSq SINE Alu -4 309 139 2314 99 3 0 chr3 178370987 178371281 -49153297 - AluSg SINE Alu -15 295 1 2126 127 0 16 chr3 178371281 178371418 -49153160 - AluSq SINE Alu -174 139 1 585 155 10 0 chr3 178371849 178371952 -49152626 - L1MB7 LINE L1 -85 6099 5996 * 2546 184 30 19 chr3 178371926 178372520 -49152058 - L1MB8 LINE L1 -169 6009 5475 * 3112 131 131 98 chr3 178372514 178372560 -49152018 - L1MB2 LINE L1 -9 6162 6119 2218 102 7 0 chr3 178372560 178372855 -49151723 - AluSx SINE Alu -15 297 1 3112 131 131 98 chr3 178372855 178373181 -49151397 - L1MB2 LINE L1 -52 6119 5805 1937 118 37 0 chr3 178373181 178373477 -49151101 + AluSq SINE Alu 1 306 0 3112 131 131 98 chr3 178373477 178373750 -49150828 - L1MB2 LINE L1 -366 5805 5543 2194 129 0 7 chr3 178373750 178374053 -49150525 + AluSx SINE Alu 1 301 -11 3112 131 131 98 chr3 178374053 178374215 -49150363 - L1MB2 LINE L1 -628 5543 5388 848 71 0 48 chr3 178374215 178374341 -49150237 - L1PA13 LINE L1 -18 6145 6026 3112 131 131 98 chr3 178374341 178374499 -49150079 - L1MB2 LINE L1 -783 5388 5151 249 303 108 56 chr3 178375056 178375251 -49149327 - MIR SINE MIR -3 259 55 724 276 108 9 chr3 178375602 178375834 -49148744 - MIR SINE MIR 0 262 8 1478 122 0 0 chr3 178375980 178376185 -49148393 + AluSg/x SINE Alu 104 308 -2 1777 134 16 49 chr3 178376542 178376849 -49147729 + AluSx SINE Alu 1 297 -15 254 198 105 0 chr3 178376939 178377025 -49147553 + L1MC5 LINE L1 7831 7925 -36 1318 198 84 26 chr3 178377111 178377384 -49147194 + AluJo SINE Alu 1 289 -13 294 225 144 18 chr3 178377410 178377521 -49147057 - MIR SINE MIR -57 205 81 23 86 0 0 chr3 178377699 178377757 -49146821 + AT_rich Low_complexity Low_complexity 1 58 0 306 324 118 46 chr3 178378090 178378352 -49146226 + L1MEd LINE L1 65 345 -5774 498 308 99 7 chr3 178378405 178378707 -49145871 + L1MEd LINE L1 498 827 -5292 602 303 157 49 chr3 178378796 178379305 -49145273 + L1MEd LINE L1 967 1419 -4891 525 213 200 13 chr3 178379305 178379455 -49145123 - MER5B DNA MER1_type 0 178 1 2452 72 7 0 chr3 178379455 178379762 -49144816 - AluSp SINE Alu -4 309 1 602 303 157 49 chr3 178379762 178380359 -49144219 + L1MEd LINE L1 1418 2238 -4072 296 156 56 22 chr3 178380437 178380527 -49144051 + L1MEd LINE L1 2253 2345 -3784 817 93 0 0 chr3 178381132 178381239 -49143339 - AluSg/x SINE Alu -8 301 195 1765 193 3 3 chr3 178381743 178382043 -49142535 - AluJo SINE Alu -12 300 1 540 14 0 0 chr3 178382249 178382318 -49142260 + L1PA3 LINE L1 6084 6152 -3 2238 87 39 0 chr3 178382475 178382761 -49141817 + AluSp SINE Alu 2 298 -15 364 267 77 46 chr3 178383532 178383740 -49140838 - L1ME4a LINE L1 -236 5885 5665 2133 127 3 7 chr3 178383751 178384059 -49140519 - AluSx SINE Alu -5 307 1 6871 14 0 0 chr3 178384269 178385080 -49139498 - L1PA2 LINE L1 -2 6153 5343 * 10821 26 4 0 chr3 178385074 178386420 -49138158 + L1PA2 LINE L1 3969 5319 -827 1915 162 0 13 chr3 178386554 178386857 -49137721 - AluJb SINE Alu -13 299 1 2303 104 0 7 chr3 178386920 178387217 -49137361 - AluSx SINE Alu -17 295 1 24 0 0 0 chr3 178387405 178387429 -49137149 + AT_rich Low_complexity Low_complexity 1 24 0 342 0 0 0 chr3 178388009 178388047 -49136531 + (CA)n Simple_repeat Simple_repeat 2 39 0 2242 126 0 0 chr3 178388641 178388951 -49135627 + AluSx SINE Alu 1 310 -2 291 176 78 59 chr3 178389837 178389939 -49134639 - MER103 DNA DNA -15 151 48 752 196 18 18 chr3 178389953 178390121 -49134457 - MLT1C LTR MaLR 0 467 300 583 187 19 32 chr3 178390150 178390305 -49134273 - MLT1C LTR MaLR -233 234 82 1860 102 10 76 chr3 178390918 178391232 -49133346 - AluSx SINE Alu -19 293 1 2872 176 21 4 chr3 178391263 178391793 -49132785 - MER82 DNA MER2_type -91 562 24 333 212 0 30 chr3 178393040 178393106 -49131472 - MER5C DNA MER1_type -260 64 1 2194 96 0 3 chr3 178395064 178395356 -49129222 - AluY SINE Alu -20 291 1 254 311 27 27 chr3 178395414 178395488 -49129090 + MIR SINE MIR 35 108 -100 238 312 136 32 chr3 178395823 178395948 -49128630 - MIR3 SINE MIR -48 160 23 338 275 61 15 chr3 178396858 178396989 -49127589 + MER103 DNA DNA 23 159 -7 254 311 27 27 chr3 178397857 178397931 -49126647 - MIR SINE MIR -100 108 35 2422 64 3 0 chr3 178397989 178398285 -49126293 + AluY SINE Alu 1 297 -14 320 252 48 102 chr3 178398837 178398958 -49125620 + MER5B DNA MER1_type 1 114 -64 2253 68 24 7 chr3 178398958 178399253 -49125325 - AluY SINE Alu -10 301 2 320 252 48 102 chr3 178399253 178399278 -49125300 + MER5B DNA MER1_type 114 139 -39 2277 91 3 16 chr3 178400773 178401082 -49123496 + AluSg SINE Alu 2 306 -4 5682 166 40 19 chr3 178401096 178401319 -49123259 - L1MCa LINE L1 -5274 1152 935 2210 114 0 35 chr3 178401319 178401634 -49122944 - AluSq SINE Alu -9 304 1 5682 166 40 19 chr3 178401634 178402519 -49122059 - L1MCa LINE L1 -5491 935 21 686 297 50 0 chr3 178402829 178403031 -49121547 - MLT1I LTR MaLR -3 406 195 2168 126 0 0 chr3 178403336 178403637 -49120941 - AluSx SINE Alu -11 301 1 252 133 17 67 chr3 178404272 178404332 -49120246 + Charlie8 DNA MER1_type 103 159 -2258 321 140 0 0 chr3 178404370 178404427 -49120151 + (TCCC)n Simple_repeat Simple_repeat 4 60 0 2037 124 0 0 chr3 178404443 178404716 -49119862 - AluSx SINE Alu -39 273 1 21 0 0 0 chr3 178404881 178404902 -49119676 + AT_rich Low_complexity Low_complexity 1 21 0 251 279 31 11 chr3 178405200 178405324 -49119254 + L1M4 LINE L1 5479 5611 -563 276 260 0 0 chr3 178406114 178406260 -49118318 + GA-rich Low_complexity Low_complexity 1 146 0 198 0 0 0 chr3 178406337 178406359 -49118219 + (T)n Simple_repeat Simple_repeat 1 22 0 347 273 45 8 chr3 178407239 178407371 -49117207 + L1P4 LINE L1 5674 5810 -356 207 204 0 0 chr3 178407521 178407565 -49117013 + A-rich Low_complexity Low_complexity 4 47 0 1668 115 3 28 chr3 178407684 178407771 -49116807 - Tigger7 DNA MER2_type 0 2487 2399 2133 149 3 3 chr3 178407771 178408119 -49116459 - MER7A DNA MER2_type 0 346 1 1668 115 3 28 chr3 178408119 178408295 -49116283 - Tigger7 DNA MER2_type -88 2399 2229 1954 150 27 0 chr3 178408295 178408589 -49115989 - AluSx SINE Alu -10 302 1 1668 115 3 28 chr3 178408589 178408610 -49115968 - Tigger7 DNA MER2_type -258 2229 2209 823 235 6 6 chr3 178408614 178408784 -49115794 - Tigger7 DNA MER2_type -2316 171 2 1952 115 54 0 chr3 178410688 178410966 -49113612 + AluSg SINE Alu 1 293 -17 2029 143 0 10 chr3 178410977 178411285 -49113293 - AluJo SINE Alu -7 305 1 2428 56 0 0 chr3 178411968 178412254 -49112324 + AluY SINE Alu 1 286 -25 495 78 0 0 chr3 178412854 178412918 -49111660 - AluJ/FLAM SINE Alu -225 87 24 715 286 57 40 chr3 178413516 178413996 -49110582 - MER90 LTR ERV1 -7 568 35 22 0 0 0 chr3 178414673 178414695 -49109883 + AT_rich Low_complexity Low_complexity 1 22 0 1014 189 55 21 chr3 178414905 178415196 -49109382 - LTR37A LTR ERV1 -24 402 102 2136 135 3 0 chr3 178415316 178415619 -49108959 + AluSx SINE Alu 3 306 -6 2372 103 0 0 chr3 178415677 178415988 -49108590 + AluY SINE Alu 1 311 0 24 67 0 0 chr3 178415999 178416044 -49108534 + AT_rich Low_complexity Low_complexity 1 45 0 29486 111 11 60 chr3 178416162 178422632 -49101946 - L1PA7 LINE L1 -4 6150 12 2285 136 0 0 chr3 178422656 178423044 -49101534 - AluSg SINE Alu 0 388 1 2151 135 0 16 chr3 178424979 178425282 -49099296 + AluSx SINE Alu 1 298 -14 497 338 103 13 chr3 178425618 178425852 -49098726 - MIR SINE MIR -2 260 6 36 23 0 0 chr3 178426593 178426636 -49097942 + AT_rich Low_complexity Low_complexity 1 43 0 1719 86 4 0 chr3 178426636 178426868 -49097710 - L1PA7 LINE L1 -4 6150 5918 574 67 0 0 chr3 178426896 178426971 -49097607 - U3 snRNA snRNA -141 76 2 1849 114 89 45 chr3 178427265 178427624 -49096954 + THE1C LTR MaLR 1 375 0 683 116 11 0 chr3 178427830 178427925 -49096653 - AluSg/x SINE Alu -18 292 197 402 281 0 33 chr3 178428781 178428902 -49095676 - MIR SINE MIR -77 185 69 2004 114 0 0 chr3 178429278 178429541 -49095037 + AluSx SINE Alu 1 263 -49 1652 203 137 24 chr3 178429710 178430164 -49094414 - MLT1D LTR MaLR 0 505 1 1487 236 20 46 chr3 178430899 178431395 -49093183 + L1MB7 LINE L1 4570 5052 -1094 2243 78 0 75 chr3 178431399 178431719 -49092859 + AluSc SINE Alu 1 296 -13 2966 176 63 52 chr3 178431745 178432519 -49092059 + L1MB7 LINE L1 5401 6183 -1 1316 204 55 17 chr3 178432517 178432861 -49091717 + L1MB8 LINE L1 5821 6177 -1 * 2713 133 14 18 chr3 178433630 178434066 -49090512 - Tigger2a DNA MER2_type 0 434 1 783 287 68 9 chr3 178436522 178436860 -49087718 - L1ME4a LINE L1 -242 5879 5522 294 254 100 18 chr3 178437101 178437211 -49087367 - MIR SINE MIR -80 182 64 23 0 0 0 chr3 178437468 178437491 -49087087 + AT_rich Low_complexity Low_complexity 1 23 0 592 256 152 6 chr3 178438234 178438398 -49086180 + MER5A DNA MER1_type 1 188 -1 2838 32 0 0 chr3 178440602 178440914 -49083664 + L1PA5 LINE L1 5837 6148 -6 252 0 0 0 chr3 178440915 178440943 -49083635 + (TA)n Simple_repeat Simple_repeat 1 28 0 328 280 40 10 chr3 178440964 178441064 -49083514 - MIR SINE MIR -114 148 46 283 227 57 23 chr3 178441172 178441260 -49083318 + MER103 DNA DNA 66 156 -10 614 274 5 19 chr3 178441564 178441772 -49082806 - L1MDb LINE L1 -5216 1193 989 250 250 16 0 chr3 178442784 178442848 -49081730 - L1MC/D LINE L1 -2063 5745 5681 339 325 223 26 chr3 178443061 178443442 -49081136 + L2 LINE L2 2812 3267 -5 188 239 0 0 chr3 178444991 178445037 -49079541 + L2 LINE L2 3257 3302 -11 351 337 30 6 chr3 178445648 178445817 -49078761 - MIR SINE MIR -49 213 41 198 0 0 0 chr3 178446454 178446476 -49078102 + (GA)n Simple_repeat Simple_repeat 1 22 0 1983 132 0 0 chr3 178447067 178447340 -49077238 - AluSx SINE Alu -39 273 1 855 194 47 57 chr3 178447958 178448000 -49076578 - MER3 DNA MER1_type 0 209 168 2340 101 0 0 chr3 178448000 178448307 -49076271 - AluSc SINE Alu -2 307 1 855 194 47 57 chr3 178448307 178448475 -49076103 - MER3 DNA MER1_type -41 168 1 1440 256 59 84 chr3 178448888 178450100 -49074478 - L2 LINE L2 -4 3309 2129 2205 75 0 0 chr3 178450327 178450594 -49073984 + AluY SINE Alu 1 267 -44 23 0 0 0 chr3 178452075 178452098 -49072480 + AT_rich Low_complexity Low_complexity 1 23 0 298 114 0 86 chr3 178452464 178452534 -49072044 - AluYb8 SINE Alu -1 307 244 260 363 0 0 chr3 178452608 178452743 -49071835 + A-rich Low_complexity Low_complexity 1 135 0 654 189 0 29 chr3 178453007 178453250 -49071328 + CT-rich Low_complexity Low_complexity 1 236 0 561 68 0 0 chr3 178453258 178453332 -49071246 + (TTCCC)n Simple_repeat Simple_repeat 5 78 0 1841 147 0 7 chr3 178453333 178453618 -49070960 - AluJb SINE Alu -29 283 1 23 33 0 0 chr3 178453818 178453848 -49070730 + AT_rich Low_complexity Low_complexity 1 30 0 188 217 22 22 chr3 178454911 178454957 -49069621 + L2 LINE L2 111 156 -3158 2044 147 0 7 chr3 178455475 178455782 -49068796 + AluSx SINE Alu 1 305 -7 182 217 0 17 chr3 178458352 178458412 -49066166 + CT-rich Low_complexity Low_complexity 2 60 0 364 365 82 24 chr3 178458413 178458668 -49065910 - L2 LINE L2 -25 3247 2978 6792 120 226 22 chr3 178458668 178460072 -49064506 + pTR5 LTR ERV1 749 2438 0 4671 137 8 0 chr3 178460450 178461120 -49063458 - L1PA14 LINE L1 -1 6160 5486 2844 105 15 0 chr3 178461120 178461506 -49063072 - L1PA13 LINE L1 0 6163 5769 647 76 0 22 chr3 178462629 178462721 -49061857 - LTR7 LTR ERV1 -2 448 359 1067 99 0 0 chr3 178462721 178462863 -49061715 - HERVH LTR ERV1 -7571 142 1 722 105 0 19 chr3 178462865 178462970 -49061608 - LTR7 LTR ERV1 -2 448 346 9578 149 17 9 chr3 178462971 178464102 -49060476 - L1PA13 LINE L1 -378 5785 4632 2187 103 3 50 chr3 178464102 178464423 -49060155 - AluSx SINE Alu -6 306 1 9578 149 17 9 chr3 178464423 178465415 -49059163 - L1PA13 LINE L1 -1531 4632 3650 765 73 36 36 chr3 178465414 178465435 -49059143 - L1P4 LINE L1 -668 5500 5480 * 2367 98 7 0 chr3 178465435 178465740 -49058838 - AluSx SINE Alu -5 307 1 765 73 36 36 chr3 178465740 178465855 -49058723 - L1P4 LINE L1 -687 5481 5364 2204 109 0 3 chr3 178465999 178466292 -49058286 + AluSx SINE Alu 1 292 -20 185 0 0 39 chr3 178467535 178467561 -49057017 + (TTTTTG)n Simple_repeat Simple_repeat 2 26 0 2530 56 0 3 chr3 178468129 178468432 -49056146 + AluY SINE Alu 1 302 -9 2153 132 0 0 chr3 178468591 178468887 -49055691 - AluSx SINE Alu -16 296 1 1400 188 201 15 chr3 178469104 178469498 -49055080 - MER119 DNA MER1_type -1 582 116 1665 149 29 18 chr3 178469645 178469920 -49054658 + AluJb SINE Alu 9 286 -26 1837 136 0 4 chr3 178471507 178471771 -49052807 + AluSx SINE Alu 2 264 -48 195 42 0 0 chr3 178471778 178471802 -49052776 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1545 202 24 7 chr3 178472017 178472314 -49052264 + AluJb SINE Alu 1 302 -10 202 111 0 28 chr3 178473274 178473310 -49051268 + (TTTC)n Simple_repeat Simple_repeat 2 36 0 1110 214 15 0 chr3 178473557 178473763 -49050815 - MER8 DNA MER2_type -1 238 30 2336 60 40 0 chr3 178473788 178474086 -49050492 - AluY SINE Alu -1 310 1 1074 185 47 9 chr3 178475098 178475330 -49049248 - L1MC3 LINE L1 -115 7670 7430 2838 157 51 63 chr3 178475348 178475954 -49048624 - LTR9 LTR ERV1 -13 599 1 839 108 16 8 chr3 178475997 178476126 -49048452 - L1MB8 LINE L1 -1 6177 6048 647 199 111 22 chr3 178476136 178476219 -49048359 - L1ME LINE L1 -382 5784 5710 4589 117 48 12 chr3 178476219 178476726 -49047852 - LTR8 LTR ERV1 0 691 152 2038 62 7 51 chr3 178476726 178477022 -49047556 - AluY SINE Alu 0 307 24 4589 117 48 12 chr3 178477022 178477180 -49047398 - LTR8 LTR ERV1 -539 152 1 647 199 111 22 chr3 178477180 178477277 -49047301 - L1ME LINE L1 -456 5710 5588 6292 103 25 0 chr3 178477308 178478029 -49046549 - L1PA15 LINE L1 0 6165 5422 2332 91 3 7 chr3 178478029 178478336 -49046242 - AluY SINE Alu -5 306 1 6292 103 25 0 chr3 178478336 178478734 -49045844 - L1PA15 LINE L1 -743 5422 5036 2289 117 0 0 chr3 178478735 178479044 -49045534 - AluSx SINE Alu -2 310 2 2817 197 11 2 chr3 178479045 178479583 -49044995 - L1PA15 LINE L1 -1159 4987 4445 23 0 0 0 chr3 178479644 178479667 -49044911 + AT_rich Low_complexity Low_complexity 1 23 0 1042 174 27 89 chr3 178479667 178479926 -49044652 - L1MB8 LINE L1 -140 6038 5796 * 2911 194 145 12 chr3 178479923 178480675 -49043903 - L1MC3 LINE L1 -376 7409 6558 258 320 70 6 chr3 178481117 178481273 -49043305 + L1ME4a LINE L1 5956 6121 0 2062 135 3 10 chr3 178481305 178481609 -49042969 - AluSx SINE Alu -10 302 1 1319 96 0 0 chr3 178482501 178482667 -49041911 + AluSq SINE Alu 133 298 -15 209 317 111 28 chr3 178482875 178483055 -49041523 + MIR SINE MIR 63 257 -5 2237 110 0 0 chr3 178483434 178483733 -49040845 + AluSx SINE Alu 1 299 -13 38 39 0 0 chr3 178483908 178483960 -49040618 + AT_rich Low_complexity Low_complexity 1 52 0 6215 56 5 0 chr3 178483961 178484716 -49039862 - L1PA7 LINE L1 -11 6143 5385 35 0 0 0 chr3 178484716 178484751 -49039827 + AT_rich Low_complexity Low_complexity 1 35 0 5562 52 9 1 chr3 178484751 178485411 -49039167 - SVA Other Other 0 1386 722 279 56 0 0 chr3 178485411 178485447 -49039131 - L1PA7 LINE L1 -736 5395 5360 215 309 0 0 chr3 178487433 178487488 -49037090 + GA-rich Low_complexity Low_complexity 2 56 0 216 0 0 0 chr3 178489326 178489350 -49035228 + (T)n Simple_repeat Simple_repeat 1 24 0 2620 145 42 5 chr3 178489418 178489826 -49034752 + MSTA LTR MaLR 4 426 -2 1762 183 20 7 chr3 178491121 178491427 -49033151 - AluJo SINE Alu -2 310 1 1525 213 150 41 chr3 178491635 178492142 -49032436 + MER90 LTR ERV1 1 562 -13 1716 181 20 0 chr3 178492160 178492459 -49032119 - AluJo SINE Alu -7 305 1 1580 165 22 5 chr3 178492747 178493020 -49031558 - MLT1D LTR MaLR 0 505 250 312 295 7 54 chr3 178493049 178493198 -49031380 - L2 LINE L2 -253 3060 2919 259 312 165 9 chr3 178493342 178493451 -49031127 + L2 LINE L2 3144 3269 -3 2171 144 18 6 chr3 178493556 178493889 -49030689 + MER61A LTR ERV1 7 343 0 230 133 0 22 chr3 178494502 178494547 -49030031 + (TTCC)n Simple_repeat Simple_repeat 3 46 0 486 264 9 0 chr3 178494565 178494671 -49029907 - MER63A DNA MER1_type 0 210 104 818 284 19 5 chr3 178494708 178494923 -49029655 + MIR SINE MIR 23 240 -22 2850 138 26 30 chr3 178496353 178496818 -49027760 - MLT1C LTR MaLR -4 463 1 351 307 76 36 chr3 178496864 178497115 -49027463 - MIR SINE MIR 0 262 2 2245 96 10 3 chr3 178497265 178497568 -49027010 - AluSx SINE Alu -3 309 5 322 268 113 30 chr3 178497582 178497750 -49026828 - L1MC4 LINE L1 -1916 6126 5945 230 325 12 12 chr3 178497996 178498079 -49026499 + L2 LINE L2 3231 3313 0 5403 154 33 140 chr3 178498262 178498323 -49026255 - Charlie1a DNA MER1_type -1306 1455 1389 3553 83 39 2 chr3 178498323 178498783 -49025795 - L1PA10 LINE L1 -14 6154 5678 5403 154 33 140 chr3 178498783 178499191 -49025387 - Charlie1a DNA MER1_type -1372 1389 939 644 155 0 0 chr3 178499191 178499288 -49025290 + AluSg/x SINE Alu 200 296 -14 5403 154 33 140 chr3 178499288 178499599 -49024979 - Charlie1a DNA MER1_type -1822 939 596 2433 58 0 29 chr3 178499599 178499910 -49024668 + AluY SINE Alu 1 302 -9 5403 154 33 140 chr3 178499910 178500659 -49023919 - Charlie1a DNA MER1_type -2165 596 2 2287 77 7 7 chr3 178500977 178501294 -49023284 + AluSq SINE Alu 1 317 0 1628 285 67 18 chr3 178501686 178502346 -49022232 - L1ME3A LINE L1 -245 5925 5239 2356 126 119 12 chr3 178502347 178502687 -49021891 - Tigger3(Golem) DNA MER2_type -2 3026 2633 212 86 29 0 chr3 178502687 178502722 -49021856 + (TGAG)n Simple_repeat Simple_repeat 1 36 0 2356 126 119 12 chr3 178502722 178502794 -49021784 - Tigger3(Golem) DNA MER2_type -395 2633 2570 * 3035 147 6 6 chr3 178502774 178503271 -49021307 - Tigger3(Golem) DNA MER2_type -671 2358 1862 484 190 30 20 chr3 178503269 178503369 -49021209 - Tigger3(Golem) DNA MER2_type -2928 101 1 * 1303 193 40 124 chr3 178503577 178503645 -49020933 - MLT1B LTR MaLR 0 390 318 2240 131 0 0 chr3 178503645 178503958 -49020620 - AluSq SINE Alu 0 313 1 1303 193 40 124 chr3 178503958 178504315 -49020263 - MLT1B LTR MaLR -72 318 1 1066 261 35 33 chr3 178504365 178504794 -49019784 - L1ME3A LINE L1 -2125 4021 3592 2095 93 10 17 chr3 178505725 178506054 -49018524 + AluSq SINE Alu 2 328 0 512 231 89 93 chr3 178506522 178506766 -49017812 + L1ME3A LINE L1 5620 5865 -290 1703 188 67 31 chr3 178506999 178507446 -49017132 + pTR5 LTR ERV1 741 1203 -1235 590 193 66 18 chr3 178507910 178508076 -49016502 + pTR5 LTR ERV1 1171 1344 -1094 5155 113 6 132 chr3 178508092 178509032 -49015546 + LTR12 LTR ERV1 5 826 0 1159 34 74 0 chr3 178509038 178509187 -49015391 + LTR12 LTR ERV1 555 714 0 266 324 65 0 chr3 178509975 178510083 -49014495 + MIR SINE MIR 4 118 -144 187 275 0 0 chr3 178510080 178510120 -49014458 + L2 LINE L2 3217 3256 -16 * 226 189 0 0 chr3 178510088 178510125 -49014453 + MIR SINE MIR 221 257 -5 1999 117 7 3 chr3 178510225 178510516 -49014062 - AluSq SINE Alu -14 299 8 189 344 11 21 chr3 178510573 178510666 -49013912 + L2 LINE L2 2409 2500 -814 189 0 0 0 chr3 178510830 178510851 -49013727 + (TC)n Simple_repeat Simple_repeat 2 22 0 720 148 0 0 chr3 178510851 178510952 -49013626 - AluJ SINE Alu -16 296 196 486 231 0 0 chr3 178510978 178511069 -49013509 - AluJ SINE Alu -105 207 117 2420 75 3 10 chr3 178511104 178511411 -49013167 + AluY SINE Alu 1 305 -6 367 232 11 32 chr3 178511425 178511520 -49013058 + L2 LINE L2 3221 3313 0 376 365 43 56 chr3 178511554 178512193 -49012385 + L2 LINE L2 2566 3265 -7 244 356 106 0 chr3 178514296 178514428 -49010150 + MIR SINE MIR 109 254 -8 395 292 151 47 chr3 178514653 178514965 -49009613 + L1ME4a LINE L1 5320 5598 -523 1630 99 5 18 chr3 178514965 178515209 -49009369 + AluSx SINE Alu 64 304 0 395 292 151 47 chr3 178515209 178515404 -49009174 + L1ME4a LINE L1 5598 5883 -238 238 290 37 0 chr3 178515573 178515680 -49008898 + L1ME4a LINE L1 5973 6083 -38 348 111 0 0 chr3 178516257 178516311 -49008267 + (TCCC)n Simple_repeat Simple_repeat 3 56 0 2048 199 88 0 chr3 178516558 178516999 -49007579 - L1ME1 LINE L1 -5 6161 5682 1042 171 0 0 chr3 178517002 178517172 -49007406 - FRAM SINE Alu -7 169 1 3846 213 50 45 chr3 178517173 178518607 -49005971 - L1ME1 LINE L1 -470 5696 4255 30858 115 19 60 chr3 178518612 178519412 -49005166 - L1PA7 LINE L1 -13 6141 5309 2032 90 0 25 chr3 178519412 178519690 -49004888 + AluY SINE Alu 39 309 -2 30858 115 19 60 chr3 178519690 178524880 -48999698 - L1PA7 LINE L1 -845 5309 428 258 32 0 0 chr3 178524880 178524911 -48999667 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 30858 115 19 60 chr3 178524911 178525312 -48999266 - L1PA7 LINE L1 -5726 428 12 1749 166 3 11 chr3 178525519 178525841 -48998737 - AluJo SINE Alu 0 320 1 1719 162 8 84 chr3 178525932 178526291 -48998287 + MER7A DNA MER2_type 3 332 -14 2426 138 78 16 chr3 178526291 178526696 -48997882 - LOR1b LTR ERV1 0 461 26 1794 156 22 101 chr3 178526696 178527061 -48997517 + MER1B DNA MER1_type 2 337 0 2426 138 78 16 chr3 178527061 178527089 -48997489 - LOR1b LTR ERV1 -435 26 1 412 298 80 32 chr3 178527138 178527577 -48997001 - L1M4 LINE L1 -812 5334 4875 1780 159 17 17 chr3 178528208 178528497 -48996081 + AluJo SINE Alu 1 289 -23 4792 131 109 56 chr3 178528665 178530176 -48994402 + pTR5 LTR ERV1 79 2438 0 340 345 24 12 chr3 178530182 178530350 -48994228 - L1M4 LINE L1 -1640 4506 4337 388 297 89 87 chr3 178530378 178530836 -48993742 - MLT1J LTR MaLR -35 476 18 718 311 74 21 chr3 178530837 178531162 -48993416 - LTR16C LTR ERVL -16 475 134 1271 185 17 4 chr3 178531283 178531515 -48993063 - MER58B DNA MER1_type -2 339 105 7449 120 17 16 chr3 178531515 178533618 -48990960 - L1MA3 LINE L1 -12 7712 5606 5936 199 20 16 chr3 178533612 178534931 -48989647 - L1MA3 LINE L1 -2366 5199 3875 * 1773 207 61 0 chr3 178534943 178535306 -48989272 - L1MA3 LINE L1 -6141 1424 1040 269 309 73 7 chr3 178535349 178535485 -48989093 - L1MC/D LINE L1 -2137 5671 5527 231 103 0 0 chr3 178535487 178535526 -48989052 + (TA)n Simple_repeat Simple_repeat 2 40 0 313 221 64 36 chr3 178535533 178535673 -48988905 + L1ME LINE L1 5699 5818 -303 502 66 0 0 chr3 178536390 178536451 -48988127 - L1P LINE L1 -4614 1532 1472 7139 65 15 0 chr3 178536451 178537369 -48987209 + L1PA7 LINE L1 5210 6139 -15 246 207 69 35 chr3 178537370 178537457 -48987121 + L1MC4 LINE L1 6614 6703 -1339 317 279 47 0 chr3 178537479 178537565 -48987013 + L1MC4 LINE L1 6614 6703 -1339 * 324 298 0 29 chr3 178537507 178537611 -48986967 - L1MC4 LINE L1 -1339 6703 6603 1781 214 212 17 chr3 178537615 178538155 -48986423 + LTR50 LTR ERVL 53 719 -76 2277 69 34 3 chr3 178538155 178538446 -48986132 - AluY SINE Alu -11 300 1 1781 214 212 17 chr3 178538446 178538494 -48986084 + LTR50 LTR ERVL 719 756 -39 1673 316 90 32 chr3 178538692 178539920 -48984658 + L2 LINE L2 2010 3313 0 270 335 37 62 chr3 178540000 178540161 -48984417 - MIR SINE MIR -85 177 21 422 307 8 24 chr3 178540382 178540509 -48984069 + MIR SINE MIR 25 149 -59 342 0 0 0 chr3 178540529 178540567 -48984011 + (CA)n Simple_repeat Simple_repeat 2 39 0 383 319 90 27 chr3 178541332 178541520 -48983058 + MIR3 SINE MIR 3 202 -6 886 234 83 10 chr3 178542300 178542492 -48982086 + MER63A DNA MER1_type 4 209 -1 21 89 0 0 chr3 178542828 178542884 -48981694 + AT_rich Low_complexity Low_complexity 1 56 0 22 0 0 0 chr3 178545248 178545270 -48979308 + AT_rich Low_complexity Low_complexity 1 22 0 637 250 42 7 chr3 178546639 178546783 -48977795 + MIR SINE MIR 14 162 -100 753 280 172 43 chr3 178546784 178547269 -48977309 + MLT1H1 LTR MaLR 1 595 0 2738 211 53 32 chr3 178547388 178547499 -48977079 - Charlie2 DNA MER1_type 0 2862 2755 1870 140 0 99 chr3 178547499 178547884 -48976694 + MER7A DNA MER2_type 2 346 0 2738 211 53 32 chr3 178547884 178548623 -48975955 - Charlie2 DNA MER1_type -107 2755 1994 1158 176 18 0 chr3 178548643 178548865 -48975713 - L1MA4 LINE L1 -7 6293 6068 24 0 0 0 chr3 178548876 178548900 -48975678 + AT_rich Low_complexity Low_complexity 1 24 0 856 272 59 25 chr3 178548923 178549243 -48975335 - L2 LINE L2 -552 2762 2432 294 289 134 1 chr3 178549300 178549486 -48975092 - L1ME LINE L1 -4470 1610 1447 * 943 202 72 26 chr3 178549476 178549773 -48974805 - L1ME LINE L1 -5050 1033 723 295 39 0 59 chr3 178549987 178550038 -48974540 + (TTCC)n Simple_repeat Simple_repeat 1 48 0 2133 119 13 22 chr3 178550038 178550350 -48974228 - AluSx SINE Alu -3 309 1 2094 139 3 0 chr3 178551914 178552216 -48972362 + AluSq SINE Alu 1 303 -10 2305 86 0 19 chr3 178552904 178553219 -48971359 + AluY SINE Alu 3 311 0 202 189 0 0 chr3 178553484 178553521 -48971057 + GA-rich Low_complexity Low_complexity 3 39 0 1950 89 0 29 chr3 178554096 178554396 -48970182 - AluSq SINE Alu 0 302 11 390 267 29 0 chr3 178555038 178555143 -48969435 + MER94 DNA DNA 27 134 0 253 294 55 0 chr3 178555930 178556037 -48968541 - MIR SINE MIR -62 146 28 243 301 233 0 chr3 178557610 178557773 -48966805 + MIR SINE MIR 50 250 -12 491 215 158 32 chr3 178558364 178558436 -48966142 + MER5A DNA MER1_type 4 66 -123 2074 134 10 0 chr3 178558436 178558741 -48965837 + AluSx SINE Alu 1 308 -4 491 215 158 32 chr3 178558741 178558826 -48965752 + MER5A DNA MER1_type 66 181 -8 190 244 0 0 chr3 178558903 178558944 -48965634 - MIR SINE MIR -132 130 90 290 128 0 0 chr3 178559070 178559109 -48965469 + 5S rRNA rRNA 1 39 -82 2498 67 0 0 chr3 178559579 178559876 -48964702 - AluY SINE Alu -14 297 1 763 236 59 5 chr3 178559955 178560158 -48964420 - LTR33 LTR ERVL -305 216 3 207 369 79 9 chr3 178560220 178560434 -48964144 - L2 LINE L2 -2066 1248 1020 312 143 0 0 chr3 178560903 178560959 -48963619 + (TATTG)n Simple_repeat Simple_repeat 3 58 0 440 267 17 130 chr3 178560984 178561284 -48963294 + MLT1K LTR MaLR 323 588 0 290 213 11 69 chr3 178561606 178561707 -48962871 - MIR3 SINE MIR -50 158 60 367 302 113 5 chr3 178561717 178561929 -48962649 - MIR SINE MIR 0 262 28 1754 150 3 41 chr3 178561936 178562250 -48962328 - AluJb SINE Alu -9 303 2 553 281 0 65 chr3 178562989 178563079 -48961499 - MIR SINE MIR 0 262 189 2176 136 7 0 chr3 178563079 178563389 -48961189 + AluSx SINE Alu 1 312 0 553 281 0 65 chr3 178563389 178563483 -48961095 - MIR SINE MIR -73 189 90 360 284 142 0 chr3 178563786 178563927 -48960651 + MIR SINE MIR 53 213 -49 3989 111 107 85 chr3 178564671 178566052 -48958526 - pTR5 LTR ERV1 0 2438 66 436 192 26 0 chr3 178566222 178566300 -48958278 + MER5A DNA MER1_type 5 84 -105 203 328 16 0 chr3 178566831 178566892 -48957686 + L2 LINE L2 3204 3265 -7 180 233 0 139 chr3 178566991 178567077 -48957501 - MIR SINE MIR -114 94 21 807 295 97 65 chr3 178567314 178567819 -48956759 + MLT1G1 LTR MaLR 75 595 0 444 353 112 30 chr3 178568506 178569148 -48955430 + L2 LINE L2 2566 3260 -12 4330 51 14 0 chr3 178569343 178569851 -48954727 + L1PA7 LINE L1 5640 6154 0 229 263 51 44 chr3 178570145 178570282 -48954296 + L1ME4a LINE L1 5625 5762 -359 400 194 150 38 chr3 178570377 178570537 -48954041 + L1ME4a LINE L1 5900 6077 -44 23 33 0 0 chr3 178570559 178570589 -48953989 + AT_rich Low_complexity Low_complexity 1 30 0 3650 129 29 2 chr3 178571050 178571563 -48953015 + MER1A DNA MER1_type 1 527 0 1799 114 13 94 chr3 178572763 178573106 -48951472 + AluSx SINE Alu 1 318 0 397 288 55 0 chr3 178573114 178573241 -48951337 - MIR SINE MIR -65 143 23 269 289 0 74 chr3 178573741 178573931 -48950647 + G-rich Low_complexity Low_complexity 4 179 0 421 217 43 48 chr3 178574577 178574710 -48949868 + MLT1J2 LTR MaLR 65 228 -286 591 276 51 9 chr3 178574833 178575047 -48949531 - LTR33 LTR ERVL -2 519 297 500 225 70 23 chr3 178575111 178575240 -48949338 - LTR33 LTR ERVL -343 178 44 286 252 67 74 chr3 178575264 178575399 -48949179 + MLT1J2 LTR MaLR 299 432 -18 1606 164 0 16 chr3 178576026 178576331 -48948247 + L1P LINE L1 5048 5347 -799 2103 111 7 7 chr3 178576331 178576659 -48947919 - AluSq SINE Alu 0 328 1 895 235 6 6 chr3 178578566 178578736 -48945842 + Tigger7 DNA MER2_type 2 171 -534 1817 115 3 28 chr3 178578740 178578761 -48945817 + Tigger7 DNA MER2_type 2309 2329 -258 1940 150 27 0 chr3 178578761 178579055 -48945523 + AluSx SINE Alu 1 302 -10 1817 115 3 28 chr3 178579055 178579231 -48945347 + Tigger7 DNA MER2_type 2329 2499 -88 2306 149 3 3 chr3 178579231 178579579 -48944999 + MER7A DNA MER2_type 1 346 0 1817 115 3 28 chr3 178579579 178579666 -48944912 + Tigger7 DNA MER2_type 2499 2587 0 207 204 0 0 chr3 178579785 178579829 -48944749 + T-rich Low_complexity Low_complexity 4 47 0 399 254 45 15 chr3 178579979 178580113 -48944465 - L1M3 LINE L1 -371 5809 5672 198 0 0 0 chr3 178580992 178581014 -48943564 + (A)n Simple_repeat Simple_repeat 1 22 0 243 267 0 0 chr3 178581092 178581238 -48943340 + CT-rich Low_complexity Low_complexity 1 146 0 291 284 95 17 chr3 178582036 178582152 -48942426 - L1M3 LINE L1 -581 5603 5479 21 0 0 0 chr3 178582449 178582470 -48942108 + AT_rich Low_complexity Low_complexity 1 21 0 2033 124 0 0 chr3 178582635 178582908 -48941670 + AluSx SINE Alu 1 273 -39 321 140 0 0 chr3 178582924 178582981 -48941597 + (GGGA)n Simple_repeat Simple_repeat 4 60 0 300 240 174 33 chr3 178583019 178583140 -48941438 - Charlie8 DNA MER1_type -2269 148 11 2166 126 0 0 chr3 178583716 178584017 -48940561 + AluSx SINE Alu 1 301 -11 762 283 42 5 chr3 178584261 178584524 -48940054 + MLT1I LTR MaLR 106 406 -3 5038 163 51 29 chr3 178584836 178585721 -48938857 + L1MCa LINE L1 21 930 -5496 2200 114 0 35 chr3 178585721 178586036 -48938542 + AluSq SINE Alu 1 304 -9 5038 163 51 29 chr3 178586036 178586094 -48938484 + L1MCa LINE L1 930 985 -5441 323 256 73 55 chr3 178586269 178586433 -48938145 + MIR SINE MIR 44 210 -52 254 248 72 48 chr3 178586973 178587013 -48937565 - L1ME LINE L1 -474 5647 5609 1738 169 13 30 chr3 178587013 178587314 -48937264 - AluJb SINE Alu -16 296 1 254 248 72 48 chr3 178587314 178587398 -48937180 - L1ME LINE L1 -512 5609 5520 440 288 97 38 chr3 178587449 178587820 -48936758 - L1ME LINE L1 -768 5378 4986 2207 110 3 0 chr3 178588157 178588448 -48936130 + AluSq SINE Alu 1 292 -21 629 176 119 25 chr3 178589789 178589948 -48934630 - MER20 DNA MER1_type -14 205 32 441 219 48 9 chr3 178590175 178590280 -48934298 + MER91C DNA MER1_type 8 116 -24 210 150 0 50 chr3 178640483 178640543 -48884035 + (TTTTG)n Simple_repeat Simple_repeat 2 58 0 180 158 0 0 chr3 178640581 178640619 -48883959 + T-rich Low_complexity Low_complexity 1 38 0 10619 50 20 7 chr3 178640687 178642129 -48882449 + L1P LINE L1 2231 3691 -2455 304 293 0 29 chr3 178642334 178642474 -48882104 + GA-rich Low_complexity Low_complexity 4 139 0 994 299 89 28 chr3 178642784 178643362 -48881216 - L2 LINE L2 -238 3034 2167 303 284 37 0 chr3 178643635 178643716 -48880862 - MIR SINE MIR -100 162 79 391 247 117 12 chr3 178645039 178645201 -48879377 - L1ME4a LINE L1 0 6121 5943 240 314 145 78 chr3 178647172 178647853 -48876725 - L2 LINE L2 -558 2756 2122 2015 137 0 7 chr3 178647853 178648152 -48876426 + AluJo SINE Alu 7 303 -9 240 314 145 78 chr3 178648152 178649094 -48875484 - L2 LINE L2 -1192 2122 1018 3140 147 51 6 chr3 178649094 178649606 -48874972 + MER34 LTR ERV1 4 538 -4 240 314 145 78 chr3 178649606 178649633 -48874945 - L2 LINE L2 -2296 1018 994 13366 61 5 50 chr3 178650424 178653188 -48871390 + L1PA2 LINE L1 3356 5988 -167 1649 299 76 43 chr3 178653842 178654892 -48869686 + L2 LINE L2 2167 3309 -4 3653 79 24 4 chr3 178655917 178656410 -48868168 - MER4E LTR ERV1 0 766 264 271 392 0 0 chr3 178656846 178657017 -48867561 + C-rich Low_complexity Low_complexity 1 171 0 334 112 194 0 chr3 178657260 178657358 -48867220 - MER4E LTR ERV1 -649 117 1 274 219 130 73 chr3 178657365 178657488 -48867090 + HAL1 LINE L1 2071 2200 -307 222 265 114 61 chr3 178657803 178658047 -48866531 + L2 LINE L2 3036 3296 -17 2126 153 57 12 chr3 178658047 178658380 -48866198 - MER7A DNA MER2_type 0 346 1 222 265 114 61 chr3 178658380 178658399 -48866179 + L2 LINE L2 3296 3313 0 23 33 0 0 chr3 178658694 178658724 -48865854 + AT_rich Low_complexity Low_complexity 1 30 0 2019 133 194 8 chr3 178659069 178659430 -48865148 + MSTA LTR MaLR 1 428 0 233 203 178 59 chr3 178660316 178660434 -48864144 + L2 LINE L2 3141 3272 0 645 70 0 0 chr3 178661661 178661747 -48862831 - L1PB1 LINE L1 0 6151 6066 9636 205 16 9 chr3 178661747 178663879 -48860699 - L1MEc LINE L1 -945 5917 3770 6323 101 11 28 chr3 178663879 178665038 -48859540 + pTR5 LTR ERV1 744 2021 -417 417 228 10 0 chr3 178665039 178665140 -48859438 + LTR30 LTR ERV1 541 642 -80 1637 85 0 9 chr3 178665143 178665366 -48859212 + pTR5 LTR ERV1 172 392 -2046 4708 145 48 11 chr3 178665382 178666572 -48858006 - L1PBa LINE L1 -3104 3758 2512 2113 103 3 36 chr3 178666572 178666874 -48857704 - AluSq SINE Alu -21 292 1 4708 145 48 11 chr3 178666874 178667031 -48857547 - L1PBa LINE L1 -4350 2512 2362 1057 57 13 45 chr3 178667029 178667186 -48857392 + L1P LINE L1 4538 4689 -1457 * 269 306 19 19 chr3 178667300 178667457 -48857121 + CT-rich Low_complexity Low_complexity 4 160 0 324 275 20 47 chr3 178668881 178669009 -48855569 + MIR SINE MIR 75 197 -63 2098 121 3 7 chr3 178669038 178669328 -48855250 - AluSx SINE Alu -16 296 8 860 164 37 98 chr3 178670317 178670623 -48853955 - L1ME2 LINE L1 -153 6013 5731 2171 206 48 48 chr3 178670649 178671544 -48853034 - L1MEc LINE L1 -3294 3568 2694 1909 147 32 64 chr3 178671546 178671805 -48852773 + MER47A DNA MER2_type 2 247 -2076 2360 126 39 8 chr3 178671805 178672169 -48852409 - THE1C LTR MaLR 0 375 1 1909 147 32 64 chr3 178672169 178672283 -48852295 + MER47A DNA MER2_type 247 363 -3 1461 298 77 23 chr3 178672285 178673103 -48851475 - L1MEc LINE L1 -4348 2695 1834 15537 103 15 13 chr3 178673120 178676141 -48848437 - L1PA8 LINE L1 -10 6477 3452 13601 125 14 24 chr3 178676592 178679878 -48844700 - L1PA8 LINE L1 -3219 3242 6 740 236 20 10 chr3 178679873 178680072 -48844506 - L1MC1 LINE L1 0 6333 6133 * 5824 185 29 12 chr3 178680098 178681122 -48843456 - L1PA13 LINE L1 -5745 1042 1 770 116 0 8 chr3 178681130 178681251 -48843327 - L1MCa LINE L1 -5375 1051 932 230 296 58 53 chr3 178681426 178681615 -48842963 - L1M4 LINE L1 -2301 3845 3656 924 265 23 23 chr3 178681673 178681892 -48842686 + MER58A DNA MER1_type 6 224 0 516 315 20 63 chr3 178681964 178682218 -48842360 + MIR SINE MIR 20 262 0 2040 119 3 7 chr3 178683131 178683416 -48841162 + AluSx SINE Alu 1 284 -28 22 0 0 0 chr3 178683438 178683460 -48841118 + AT_rich Low_complexity Low_complexity 1 22 0 440 325 117 31 chr3 178684173 178684680 -48839898 + L2 LINE L2 2494 3061 -211 542 253 174 105 chr3 178685649 178686136 -48838442 + LTR33 LTR ERVL 1 521 0 225 227 169 141 chr3 178688044 178688286 -48836292 - L2 LINE L2 -113 3159 2911 184 296 19 0 chr3 178689508 178689562 -48835016 - L2 LINE L2 -7 3306 3252 266 222 172 30 chr3 178689598 178689697 -48834881 - MIR3 SINE MIR -81 127 15 217 283 6 84 chr3 178691872 178692038 -48832540 - L2 LINE L2 -1 3312 3160 338 279 111 78 chr3 178692175 178692508 -48832070 - L2 LINE L2 -337 2977 2634 1838 178 17 0 chr3 178692674 178692972 -48831606 - AluJo SINE Alu -9 303 1 2387 217 104 39 chr3 178693195 178693929 -48830649 + MER21B LTR ERV1 1 865 -66 366 274 82 14 chr3 178694532 178694678 -48829900 - MIR SINE MIR -12 250 95 311 330 117 34 chr3 178694990 178695304 -48829274 - L2 LINE L2 -221 3051 2716 386 200 0 0 chr3 178695365 178695445 -48829133 + MER116 DNA Mariner 1 80 0 238 344 11 0 chr3 178695861 178695951 -48828627 - L2 LINE L2 0 3272 3182 406 265 110 46 chr3 178696104 178696323 -48828255 - MIR SINE MIR -10 252 20 1034 185 15 0 chr3 178697301 178697496 -48827082 + L1PBa LINE L1 3 200 -6663 3370 95 8 112 chr3 178697498 178698639 -48825939 + L1PBa LINE L1 636 1865 -4998 183 377 19 9 chr3 178698792 178698898 -48825680 + MIR SINE MIR 46 152 -110 295 347 135 25 chr3 178699016 178699261 -48825317 - L2 LINE L2 -9 3263 2992 260 256 202 54 chr3 178699956 178700124 -48824454 + MLT1K LTR MaLR 378 570 -18 201 323 19 71 chr3 178700162 178700317 -48824261 - L2 LINE L2 -189 3083 2937 668 296 139 42 chr3 178700416 178700919 -48823659 - L2 LINE L2 -536 2778 2227 2141 133 56 14 chr3 178701886 178702246 -48822332 - THE1C LTR MaLR 0 375 1 335 306 117 47 chr3 178702646 178702835 -48821743 + L1ME4a LINE L1 5730 5904 -217 2103 109 0 3 chr3 178702835 178703118 -48821460 + AluSx SINE Alu 1 282 -30 335 306 117 47 chr3 178703118 178703155 -48821423 + L1ME4a LINE L1 5904 5937 -184 2297 106 3 0 chr3 178703155 178703456 -48821122 + AluSx SINE Alu 1 302 -10 335 306 117 47 chr3 178703456 178703545 -48821033 + L1ME4a LINE L1 5937 6068 -53 213 121 0 0 chr3 178704148 178704181 -48820397 + (TTTTC)n Simple_repeat Simple_repeat 2 34 0 330 302 122 14 chr3 178704694 178704833 -48819745 + MIR SINE MIR 30 183 -79 300 200 57 0 chr3 178704943 178705013 -48819565 + MIR SINE MIR 175 248 -14 191 224 0 15 chr3 178705029 178705096 -48819482 + CT-rich Low_complexity Low_complexity 4 69 0 1571 230 88 93 chr3 178705322 178705399 -48819179 + L1MC4 LINE L1 7009 7085 -957 1819 134 70 3 chr3 178705399 178705683 -48818895 + AluSx SINE Alu 1 303 -9 1571 230 88 93 chr3 178705683 178706450 -48818128 + L1MC4 LINE L1 7085 7848 -194 264 237 34 0 chr3 178706554 178706613 -48817965 - Tigger6 DNA MER2_type -19 1578 1518 6267 130 10 3 chr3 178707073 178708443 -48816135 + L1PB1 LINE L1 4767 6146 -5 579 258 154 18 chr3 178708648 178708880 -48815698 - MIR SINE MIR 0 262 3 858 252 114 29 chr3 178709388 178709765 -48814813 + L1ME3 LINE L1 5753 6161 -1 237 283 111 50 chr3 178709820 178710018 -48814560 - L2 LINE L2 -473 2841 2632 30 0 0 0 chr3 178710595 178710625 -48813953 + AT_rich Low_complexity Low_complexity 1 30 0 1863 176 0 7 chr3 178710839 178711140 -48813438 + AluJo SINE Alu 1 299 -13 308 73 73 15 chr3 178711380 178711448 -48813130 + MER96B DNA MER1_type? 108 179 -238 229 94 0 0 chr3 178711471 178711503 -48813075 + MER96B DNA MER1_type? 144 175 0 308 200 167 0 chr3 178711503 178711563 -48813015 - MER58A DNA MER1_type -31 76 7 1424 159 34 4 chr3 178711594 178711827 -48812751 - Tigger3b DNA MER2_type -1 1230 991 * 4254 125 41 37 chr3 178711811 178712571 -48812007 - Tigger3b DNA MER2_type -415 816 54 443 250 0 10 chr3 178712651 178712747 -48811831 + MER96B DNA MER1_type? 323 417 0 196 189 0 0 chr3 178714807 178714844 -48809734 + L2 LINE L2 3277 3313 0 1724 229 64 32 chr3 178715150 178715653 -48808925 + LTR53 LTR ERVL 1 519 0 201 74 0 0 chr3 178716883 178716910 -48807668 + (CCGG)n Simple_repeat Simple_repeat 3 29 0 4384 180 28 14 chr3 178717383 178718611 -48805967 - L1MB2 LINE L1 -47 6124 4879 339 255 38 38 chr3 178718605 178718762 -48805816 - L1ME4a LINE L1 -252 5869 5713 * 259 252 16 150 chr3 178718964 178719045 -48805533 + MIR SINE MIR 21 81 -127 2209 163 5 47 chr3 178719045 178719449 -48805129 + MLT1B LTR MaLR 4 390 0 259 252 16 150 chr3 178719449 178719494 -48805084 + MIR SINE MIR 81 130 -78 198 0 0 0 chr3 178719659 178719681 -48804897 + (TTTG)n Simple_repeat Simple_repeat 1 22 0 205 200 0 20 chr3 178720535 178720585 -48803993 + A-rich Low_complexity Low_complexity 3 51 0 623 280 75 67 chr3 178720599 178720988 -48803590 + MLT1J LTR MaLR 94 485 -26 1113 148 92 24 chr3 178721001 178721251 -48803327 - MER33 DNA MER1_type -56 268 2 1285 121 6 0 chr3 178721607 178721789 -48802789 - AluSg/x SINE Alu -10 302 120 736 259 69 20 chr3 178721900 178722147 -48802431 - L1ME LINE L1 -372 5749 5491 525 44 0 0 chr3 178722167 178722235 -48802343 + (TTCC)n Simple_repeat Simple_repeat 4 71 0 1638 174 24 10 chr3 178722244 178722542 -48802036 - AluJo SINE Alu -10 302 1 2982 201 24 56 chr3 178722804 178723614 -48800964 - L1ME1 LINE L1 -5 6182 5411 1247 300 69 21 chr3 178724030 178724636 -48799942 - L2 LINE L2 -7 3306 2670 460 252 15 8 chr3 178724641 178724772 -48799806 - MER113 DNA MER1_type? -389 132 1 324 263 25 0 chr3 178725275 178725355 -48799223 + MLT1J LTR MaLR 423 504 -7 323 324 71 11 chr3 178726309 178726486 -48798092 - MIR SINE MIR -63 145 1 403 263 194 29 chr3 178726519 178726694 -48797884 + MIR SINE MIR 8 211 -51 1800 191 3 0 chr3 178726787 178727096 -48797482 - AluJo SINE Alu -2 310 1 692 284 139 10 chr3 178727136 178727446 -48797132 - L2 LINE L2 0 3313 2964 498 227 87 53 chr3 178727446 178727596 -48796982 + MER69A DNA AcHobo 4 158 -19 1379 253 155 7 chr3 178727610 178728048 -48796530 - L2 LINE L2 -354 2960 2458 241 267 38 67 chr3 178728048 178728153 -48796425 - L2 LINE L2 -1114 2200 2099 247 342 99 0 chr3 178728337 178728489 -48796089 + MIR3 SINE MIR 27 193 -15 198 0 0 0 chr3 178728518 178728540 -48796038 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 2325 69 45 0 chr3 178728960 178729250 -48795328 - AluY SINE Alu -8 303 1 324 272 72 40 chr3 178729254 178729379 -48795199 - MIR SINE MIR -61 147 19 3446 166 48 35 chr3 178729476 178730198 -48794380 - L1MB7 LINE L1 -9 6175 5444 267 135 0 0 chr3 178730201 178730238 -48794340 - MER3 DNA MER1_type -126 83 47 378 215 47 28 chr3 178730296 178730403 -48794175 - MIR SINE MIR -6 256 148 2272 139 82 0 chr3 178730406 178730736 -48793842 + LTR18A LTR ERVL 1 357 0 1802 184 0 0 chr3 178730750 178731032 -48793546 + HERVL18 LTR ERVL 9 290 -5757 * 34222 154 9 8 chr3 178731029 178736278 -48788300 + HERVL18 LTR ERVL 790 6047 0 2444 123 56 6 chr3 178736279 178736619 -48787959 + LTR18A LTR ERVL 1 357 0 381 250 153 32 chr3 178736619 178736743 -48787835 - MIR SINE MIR -122 140 2 197 237 0 0 chr3 178736860 178736898 -48787680 - MER5A DNA MER1_type 0 189 152 1107 269 92 41 chr3 178737022 178737434 -48787144 - MLT1J LTR MaLR -78 433 1 729 259 12 6 chr3 178737545 178737711 -48786867 - MER5B DNA MER1_type 0 178 12 569 304 114 31 chr3 178738424 178738809 -48785769 - L3b LINE CR1 -39 1544 1128 786 211 17 11 chr3 178738811 178738986 -48785592 - MER5B DNA MER1_type -1 177 2 619 240 41 12 chr3 178739084 178739255 -48785323 + MER5B DNA MER1_type 3 178 0 843 218 11 11 chr3 178739263 178739451 -48785127 + MER5A DNA MER1_type 1 188 -1 231 298 57 65 chr3 178739452 178739697 -48784881 + MLT1L LTR MaLR 148 390 -225 268 229 110 18 chr3 178739737 178739850 -48784728 + MLT1L LTR MaLR 380 597 -10 372 267 31 29 chr3 178739984 178740118 -48784460 + MER5B DNA MER1_type 1 145 -44 987 200 6 6 chr3 178740154 178740329 -48784249 + MER96 DNA MER1_type 1 175 0 316 305 33 34 chr3 178742284 178742485 -48782093 + MIR SINE MIR 19 221 -41 193 319 43 32 chr3 178742490 178742584 -48781994 + MIR3 SINE MIR 69 163 -45 243 239 75 66 chr3 178742601 178742642 -48781936 + MER5A DNA MER1_type 29 68 -110 1937 167 116 25 chr3 178742642 178743038 -48781540 + MSTB1 LTR MaLR 1 432 0 243 239 75 66 chr3 178743038 178743134 -48781444 + MER5A DNA MER1_type 68 178 0 244 287 115 112 chr3 178743770 178744136 -48780442 - L2 LINE L2 -19 3253 2887 188 253 149 35 chr3 178744183 178744270 -48780308 - L2 LINE L2 -168 3104 3008 1060 257 149 23 chr3 178744824 178745504 -48779074 + L2 LINE L2 2544 3313 0 308 316 181 12 chr3 178745686 178746085 -48778493 + L2 LINE L2 2126 2591 -723 479 295 133 40 chr3 178748126 178748404 -48776174 - L2 LINE L2 -5 3308 3005 186 43 0 0 chr3 178748529 178748552 -48776026 + (T)n Simple_repeat Simple_repeat 1 23 0 409 229 17 42 chr3 178748570 178748688 -48775890 + L1MC4a LINE L1 5540 5654 -2154 357 191 170 50 chr3 178748711 178748852 -48775726 + L1MC4a LINE L1 5757 5914 -1894 419 234 160 32 chr3 178750866 178751001 -48773577 - MIR3 SINE MIR -24 184 28 23 78 0 0 chr3 178752162 178752213 -48772365 + AT_rich Low_complexity Low_complexity 1 51 0 302 348 71 5 chr3 178752233 178752417 -48772161 + Charlie7 DNA MER1_type 162 357 -2255 1181 192 18 0 chr3 178752421 178752640 -48771938 + MER58A DNA MER1_type 2 224 0 1563 192 82 46 chr3 178752761 178753343 -48771235 + Charlie7 DNA MER1_type 1614 2216 -396 27 49 0 0 chr3 178753383 178753424 -48771154 + AT_rich Low_complexity Low_complexity 1 41 0 228 223 98 27 chr3 178753432 178753616 -48770962 + Charlie7 DNA MER1_type 2413 2609 -3 294 256 0 13 chr3 178753733 178753811 -48770767 + MIR SINE MIR 185 261 -1 2020 148 46 6 chr3 178753953 178754304 -48770274 - MLT1A1 LTR MaLR 0 365 1 283 211 84 32 chr3 178754714 178754809 -48769769 - MER91C DNA MER1_type -7 133 34 259 216 0 36 chr3 178755154 178755247 -48769331 + (CACCAT)n Simple_repeat Simple_repeat 5 93 -45 1914 132 49 126 chr3 178755247 178755717 -48768861 + Tigger2a DNA MER2_type 1 434 0 259 216 0 36 chr3 178755717 178755762 -48768816 + (CACCAT)n Simple_repeat Simple_repeat 93 138 0 1857 170 10 10 chr3 178756656 178756956 -48767622 + AluJb SINE Alu 1 300 -12 1014 266 18 0 chr3 178757118 178757336 -48767242 + MIR SINE MIR 11 232 -30 212 237 85 0 chr3 178757570 178757629 -48766949 - MER5A DNA MER1_type -88 101 38 651 293 90 24 chr3 178757703 178757942 -48766636 + MLT1L LTR MaLR 38 307 -308 279 0 0 0 chr3 178757942 178757973 -48766605 + (CA)n Simple_repeat Simple_repeat 2 32 0 651 293 90 24 chr3 178757973 178758068 -48766510 + MLT1L LTR MaLR 307 394 -221 24 32 0 0 chr3 178760124 178760155 -48764423 + AT_rich Low_complexity Low_complexity 1 31 0 1642 189 115 10 chr3 178761298 178761465 -48763113 + MLT1C LTR MaLR 6 154 -313 1873 129 61 3 chr3 178761465 178761760 -48762818 + AluSx SINE Alu 1 312 0 1642 189 115 10 chr3 178761760 178762009 -48762569 + MLT1C LTR MaLR 154 466 -1 21 0 0 0 chr3 178762557 178762578 -48762000 + AT_rich Low_complexity Low_complexity 1 21 0 252 270 0 14 chr3 178762604 178762629 -48761949 + (CTA)n Simple_repeat Simple_repeat 2 26 -48 1820 148 197 14 chr3 178762629 178763056 -48761522 - MLT1D LTR MaLR 0 505 1 252 270 0 14 chr3 178763056 178763104 -48761474 + (CTA)n Simple_repeat Simple_repeat 26 74 0 203 237 40 92 chr3 178764813 178764889 -48759689 - MIR SINE MIR -73 135 64 1620 169 54 0 chr3 178765660 178765939 -48758639 - AluJb SINE Alu -18 294 1 867 191 75 0 chr3 178766021 178766194 -48758384 - MER46A DNA MER2_type 0 236 51 2105 104 7 29 chr3 178766194 178766501 -48758077 + AluSx SINE Alu 1 300 -12 21 0 0 0 chr3 178766782 178766803 -48757775 + AT_rich Low_complexity Low_complexity 1 21 0 672 264 41 20 chr3 178769204 178769401 -48755177 + MIR SINE MIR 6 206 -56 2621 40 0 0 chr3 178769486 178769786 -48754792 - AluY SINE Alu -11 300 1 632 235 186 0 chr3 178771096 178771279 -48753299 - MIR SINE MIR 0 262 46 24 0 0 0 chr3 178771335 178771359 -48753219 + AT_rich Low_complexity Low_complexity 1 24 0 630 26 0 0 chr3 178771413 178771489 -48753089 + (CCA)n Simple_repeat Simple_repeat 2 77 0 1616 151 3 58 chr3 178773107 178773419 -48751159 + AluJo SINE Alu 17 311 -1 23 33 0 0 chr3 178773419 178773449 -48751129 + AT_rich Low_complexity Low_complexity 1 30 0 11565 109 50 4 chr3 178773811 178775701 -48748877 - Tigger1 DNA MER2_type -6 2412 435 1341 176 36 7 chr3 178775703 178775982 -48748596 - Tigger1 DNA MER2_type -2131 287 1 213 219 0 0 chr3 178777650 178777691 -48746887 + A-rich Low_complexity Low_complexity 1 41 0 1734 154 0 39 chr3 178777997 178778317 -48746261 + AluJo SINE Alu 10 318 0 23 0 0 0 chr3 178780384 178780407 -48744171 + AT_rich Low_complexity Low_complexity 1 23 0 361 152 30 0 chr3 178780599 178780665 -48743913 + AluSp/q SINE Alu 226 293 -10 237 182 0 18 chr3 178781009 178781064 -48743514 + (TATAA)n Simple_repeat Simple_repeat 5 58 0 205 335 94 53 chr3 178783824 178783994 -48740584 - L2 LINE L2 -460 2854 2678 259 289 165 37 chr3 178784123 178784341 -48740237 - L2 LINE L2 -705 2609 2364 1647 171 57 13 chr3 178785109 178785408 -48739170 - AluJb SINE Alu 0 312 1 22 94 0 0 chr3 178786631 178786695 -48737883 + AT_rich Low_complexity Low_complexity 1 64 0 1988 91 58 4 chr3 178788785 178789059 -48735519 + AluSp SINE Alu 3 291 -22 894 140 207 5 chr3 178790004 178790197 -48734381 + MER46A DNA MER2_type 5 236 0 22 0 0 0 chr3 178790702 178790724 -48733854 + AT_rich Low_complexity Low_complexity 1 22 0 230 265 0 0 chr3 178791862 178791911 -48732667 - L3 LINE CR1 -19 1558 1510 205 119 24 24 chr3 178793551 178793593 -48730985 + (CAAA)n Simple_repeat Simple_repeat 3 44 0 23 0 0 0 chr3 178796688 178796711 -48727867 + AT_rich Low_complexity Low_complexity 1 23 0 203 310 28 99 chr3 178796866 178797008 -48727570 + L2 LINE L2 3137 3268 -4 31 44 0 0 chr3 178798616 178798661 -48725917 + GC_rich Low_complexity Low_complexity 1 45 0 252 220 0 20 chr3 178799576 178799626 -48724952 - L2 LINE L2 0 3313 3265 319 256 23 23 chr3 178800140 178800226 -48724352 - L1MEc LINE L1 -4164 2232 2147 650 230 16 53 chr3 178800282 178800490 -48724088 - MLT1G LTR MaLR 0 590 398 358 237 24 68 chr3 178800606 178800742 -48723836 - MLT1G LTR MaLR -259 336 130 340 299 37 0 chr3 178801449 178801556 -48723022 + MLT1J LTR MaLR 307 417 -94 1620 161 14 21 chr3 178801866 178802145 -48722433 + AluJb SINE Alu 8 284 -28 1886 156 20 7 chr3 178802555 178802856 -48721722 - AluSx SINE Alu -7 305 1 1241 203 31 45 chr3 178803459 178803580 -48720998 + AluJo SINE Alu 1 122 -181 2238 84 0 14 chr3 178803580 178803877 -48720701 - AluY SINE Alu -18 293 1 1241 203 31 45 chr3 178803877 178804062 -48720516 + AluJo SINE Alu 122 303 0 266 178 0 0 chr3 178804066 178804151 -48720427 + Alu SINE Alu 236 320 0 23 0 0 0 chr3 178804199 178804222 -48720356 + AT_rich Low_complexity Low_complexity 1 23 0 217 234 140 56 chr3 178805085 178805192 -48719386 + MER5A DNA MER1_type 39 154 -35 914 147 65 0 chr3 178805430 178805600 -48718978 - MER2 DNA MER2_type -136 209 29 254 164 0 55 chr3 178805854 178805909 -48718669 + L1ME LINE L1 5624 5675 -446 214 26 79 0 chr3 178806113 178806151 -48718427 + T-rich Low_complexity Low_complexity 3 43 0 233 226 0 19 chr3 178806370 178806423 -48718155 - MER5B DNA MER1_type -4 174 123 380 130 51 0 chr3 178806423 178806561 -48718017 + (TA)n Simple_repeat Simple_repeat 2 146 0 353 271 253 12 chr3 178806668 178806838 -48717740 - L2 LINE L2 0 3313 3103 240 258 118 21 chr3 178806868 178806961 -48717617 + MER94 DNA DNA 33 134 0 1774 262 173 16 chr3 178807031 178807726 -48716852 - L2 LINE L2 -264 3049 2253 326 306 202 40 chr3 178808774 178809248 -48715330 - L2 LINE L2 -20 3252 2697 273 247 47 13 chr3 178809807 178809957 -48714621 + L1MC4 LINE L1 6902 7056 -986 2595 142 16 14 chr3 178810605 178810760 -48713818 + L1 LINE L1 4261 4414 -1732 2493 142 24 16 chr3 178810760 178811183 -48713395 + MSTB LTR MaLR 1 426 0 2595 142 16 14 chr3 178811183 178811534 -48713044 + L1 LINE L1 4414 4768 -1378 1393 238 86 85 chr3 178811635 178811710 -48712868 + L1MC4 LINE L1 7010 7083 -959 1831 134 70 3 chr3 178811710 178811994 -48712584 + AluSx SINE Alu 1 303 -9 1393 238 86 85 chr3 178811994 178812826 -48711752 + L1MC4 LINE L1 7083 7918 -124 4359 168 18 88 chr3 178812830 178813132 -48711446 - Tigger6a DNA MER2_type -514 1083 761 1761 178 0 7 chr3 178813132 178813444 -48711134 + AluJb SINE Alu 1 310 0 4359 168 18 88 chr3 178813444 178813935 -48710643 - Tigger6a DNA MER2_type -836 761 382 2076 92 3 38 chr3 178813935 178814254 -48710324 - AluSg SINE Alu 0 309 1 4359 168 18 88 chr3 178814254 178814545 -48710033 - Tigger6a DNA MER2_type -1215 382 72 200 171 0 49 chr3 178814552 178814593 -48709985 + (TATG)n Simple_repeat Simple_repeat 4 42 0 227 232 0 18 chr3 178814593 178814649 -48709929 + L1MC4 LINE L1 7960 8014 -28 2428 47 0 59 chr3 178814756 178815077 -48709501 + AluY SINE Alu 1 302 -9 497 262 79 24 chr3 178815103 178815282 -48709296 + MIR SINE MIR 18 202 -60 989 334 105 13 chr3 178815309 178816025 -48708553 - L2 LINE L2 -1618 1696 915 2565 125 44 2 chr3 178816981 178817390 -48707188 + MSTA LTR MaLR 1 426 -2 392 354 6 0 chr3 178817486 178817661 -48706917 - L2 LINE L2 -2492 822 647 395 233 160 25 chr3 178817673 178817833 -48706745 - MER5A DNA MER1_type 0 189 2 1599 207 79 27 chr3 178818070 178818514 -48706064 + MLT1C LTR MaLR 1 467 0 25 0 0 0 chr3 178819087 178819112 -48705466 + AT_rich Low_complexity Low_complexity 1 25 0 2195 117 0 3 chr3 178819504 178819804 -48704774 - AluSc SINE Alu -10 299 1 606 279 280 37 chr3 178819967 178821011 -48703567 + L2 LINE L2 1712 3005 -308 306 333 22 22 chr3 178820991 178821081 -48703497 + L2 LINE L2 3180 3269 -3 * 3341 17 0 34 chr3 178822363 178822776 -48701802 + L1PA3 LINE L1 5757 6155 0 761 143 48 0 chr3 178823263 178823410 -48701168 - L1MB4 LINE L1 -2 6178 6025 226 277 36 48 chr3 178823467 178823550 -48701028 - L2 LINE L2 -1 3312 3231 1099 188 5 14 chr3 178823656 178823864 -48700714 - MIR SINE MIR -47 215 10 2462 213 63 56 chr3 178823879 178824461 -48700117 - L1ME1 LINE L1 0 6235 5642 2387 67 0 19 chr3 178824461 178824775 -48699803 + AluY SINE Alu 1 308 -3 2462 213 63 56 chr3 178824775 178825310 -48699268 - L1ME1 LINE L1 -593 5642 5112 5398 218 69 5 chr3 178825315 178826815 -48697763 - L1ME1 LINE L1 -2094 4121 2525 349 292 113 56 chr3 178826960 178827333 -48697245 - L1ME1 LINE L1 -5967 429 36 1015 294 34 23 chr3 178828047 178828431 -48696147 - MLT1I LTR MaLR -3 406 19 544 257 99 6 chr3 178828448 178828619 -48695959 - MIR SINE MIR -42 220 34 218 185 37 19 chr3 178828648 178828702 -48695876 + GA-rich Low_complexity Low_complexity 5 59 0 266 216 32 14 chr3 178829312 178829456 -48695122 + L1ME LINE L1 5319 5438 -683 809 219 111 26 chr3 178832335 178832678 -48691900 - MER113 DNA MER1_type? -59 462 91 392 274 286 4 chr3 178832792 178833037 -48691541 - MER5C DNA MER1_type 0 324 11 1899 135 0 17 chr3 178833037 178833355 -48691223 - AluSx SINE Alu 0 315 3 21 0 0 0 chr3 178833610 178833631 -48690947 + AT_rich Low_complexity Low_complexity 1 21 0 2028 117 4 4 chr3 178834218 178834535 -48690043 + AluSx SINE Alu 1 317 0 1126 235 63 74 chr3 178834768 178834843 -48689735 - L2 LINE L2 0 3313 3239 180 111 0 0 chr3 178834843 178834870 -48689708 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1126 235 63 74 chr3 178834870 178835224 -48689354 - L2 LINE L2 -74 3239 2889 5517 128 36 5 chr3 178835359 178836338 -48688240 + L1MA5 LINE L1 5290 6298 -2 385 249 78 102 chr3 178837463 178837529 -48687049 - L1M4 LINE L1 -1094 5052 4986 378 0 0 0 chr3 178837529 178837571 -48687007 + (TG)n Simple_repeat Simple_repeat 1 42 0 385 249 78 102 chr3 178837571 178837995 -48686583 - L1M4 LINE L1 -1160 4986 4554 2805 71 3 0 chr3 178837995 178838349 -48686229 + THE1A LTR MaLR 1 355 0 385 249 78 102 chr3 178838349 178838371 -48686207 - L1M4 LINE L1 -1592 4554 4533 2151 114 3 7 chr3 178838371 178838679 -48685899 + AluSx SINE Alu 1 307 -5 385 249 78 102 chr3 178838679 178838852 -48685726 - L1M4 LINE L1 -1613 4533 4381 310 324 55 0 chr3 178840275 178840420 -48684158 - MIR SINE MIR -14 248 96 8146 117 13 12 chr3 178840586 178841458 -48683120 - HSMAR2 DNA Mariner -1 1301 425 1930 142 60 31 chr3 178841458 178841811 -48682767 - THE1B LTR MaLR 0 364 2 8146 117 13 12 chr3 178841811 178842233 -48682345 - HSMAR2 DNA Mariner -877 425 5 31 26 0 0 chr3 178843044 178843082 -48681496 + AT_rich Low_complexity Low_complexity 1 38 0 2586 113 6 3 chr3 178843506 178843869 -48680709 - THE1B LTR MaLR 0 364 1 951 272 25 12 chr3 178844283 178844526 -48680052 - MIR SINE MIR 0 262 17 2096 106 0 0 chr3 178844561 178844864 -48679714 - L1PA11 LINE L1 -370 5804 5502 2653 108 21 0 chr3 178844864 178845242 -48679336 + L1PA11 LINE L1 5789 6174 0 2860 216 75 26 chr3 178845775 178846652 -48677926 + L1MC4a LINE L1 6880 7799 -9 661 222 100 22 chr3 178847091 178847361 -48677217 - HAL1 LINE L1 -1 2506 2216 489 232 151 59 chr3 178847424 178847788 -48676790 - MLT1H1 LTR MaLR -42 507 66 346 293 32 69 chr3 178848001 178848189 -48676389 + MIR3 SINE MIR 24 204 -4 375 294 6 34 chr3 178848360 178848537 -48676041 + L1M4 LINE L1 3661 3832 -2314 * 2453 284 124 22 chr3 178848532 178850348 -48674230 - HAL1 LINE L1 -351 2156 155 2535 292 65 42 chr3 178850570 178851998 -48672580 + L2 LINE L2 1859 3313 0 695 298 45 0 chr3 178853818 178854107 -48670471 + L1MC4 LINE L1 7095 7396 -646 1934 173 22 0 chr3 178854147 178854516 -48670062 + L1PA16 LINE L1 5789 6165 -1 238 246 16 0 chr3 178854627 178854688 -48669890 + L1MC4 LINE L1 7771 7832 -210 272 177 124 18 chr3 178854732 178854845 -48669733 + L1MC4 LINE L1 7918 8042 0 382 279 16 41 chr3 178855078 178855200 -48669378 - MIR SINE MIR -66 196 78 703 291 55 5 chr3 178857309 178857508 -48667070 - MIR SINE MIR -34 228 20 478 293 117 25 chr3 178857575 178857814 -48666764 + L2 LINE L2 3053 3313 0 302 299 36 22 chr3 178858256 178858393 -48666185 - MIR SINE MIR -103 159 21 265 119 0 102 chr3 178859193 178859252 -48665326 - L2 LINE L2 0 3313 3261 1282 123 16 87 chr3 178859259 178859545 -48665033 + MER33 DNA MER1_type 1 237 -2348 1475 117 0 0 chr3 178859545 178859759 -48664819 - L1PA8 LINE L1 0 6172 5959 1282 123 16 87 chr3 178859759 178859838 -48664740 + MER33 DNA MER1_type 237 320 -4 32 57 0 0 chr3 178860448 178860501 -48664077 + AT_rich Low_complexity Low_complexity 1 53 0 2761 126 4 29 chr3 178863326 178863508 -48661070 + L1PB1 LINE L1 5521 5706 -445 531 82 0 0 chr3 178863508 178863581 -48660997 + (TG)n Simple_repeat Simple_repeat 2 74 0 2761 126 4 29 chr3 178863581 178863944 -48660634 + L1PB1 LINE L1 5706 6143 -8 236 328 60 26 chr3 178867223 178867339 -48657239 - L2 LINE L2 -2 3270 3151 644 278 179 55 chr3 178867601 178868108 -48656470 - L2 LINE L2 -501 2813 2244 280 269 13 0 chr3 178868136 178868214 -48656364 + MIR3 SINE MIR 87 165 -43 772 151 0 8 chr3 178869604 178869730 -48654848 - FLAM_C SINE Alu -18 125 1 1931 110 0 8 chr3 178870596 178870859 -48653719 + AluSx SINE Alu 52 312 0 586 305 121 0 chr3 178871428 178871651 -48652927 - MIR SINE MIR -6 256 7 180 111 0 0 chr3 178871737 178871764 -48652814 + (CA)n Simple_repeat Simple_repeat 2 28 0 189 121 0 0 chr3 178872196 178872229 -48652349 + (TAAA)n Simple_repeat Simple_repeat 3 35 0 24 0 0 0 chr3 178872461 178872485 -48652093 + AT_rich Low_complexity Low_complexity 1 24 0 2100 138 3 52 chr3 178872782 178873167 -48651411 + MER47A DNA MER2_type 1 366 0 616 135 19 0 chr3 178873474 178873578 -48651000 + L1PB3 LINE L1 6046 6151 -3 25 51 0 0 chr3 178873578 178873617 -48650961 + AT_rich Low_complexity Low_complexity 1 39 0 2360 186 27 16 chr3 178873637 178874152 -48650426 + L1MB7 LINE L1 5664 6184 0 21 36 0 0 chr3 178874904 178874932 -48649646 + AT_rich Low_complexity Low_complexity 1 28 0 216 0 0 0 chr3 178875594 178875618 -48648960 + (TTA)n Simple_repeat Simple_repeat 2 25 0 515 301 49 6 chr3 178877996 178878159 -48646419 - MIR SINE MIR -46 216 47 1332 209 138 32 chr3 178878532 178878944 -48645634 + MLT1C LTR MaLR 12 467 0 196 308 188 0 chr3 178882250 178882367 -48642211 + L2 LINE L2 2552 2690 -624 285 345 33 10 chr3 178883927 178884078 -48640500 + MIR SINE MIR 19 179 -29 370 209 35 0 chr3 178884145 178884231 -48640347 + MLT1L LTR MaLR 178 266 -349 275 321 48 0 chr3 178884693 178884777 -48639801 - L3 LINE CR1 -74 1503 1416 1434 269 21 19 chr3 178885531 178885954 -48638624 + LTR16A LTR ERVL 16 439 -11 323 295 115 15 chr3 178886123 178886323 -48638255 - MIR SINE MIR 0 262 43 328 288 41 47 chr3 178886552 178886722 -48637856 - MIR SINE MIR -4 258 90 429 284 18 0 chr3 178886725 178886834 -48637744 + MER81 DNA DNA 4 114 0 307 331 57 74 chr3 178887298 178887473 -48637105 + MER91A DNA MER1_type 25 196 0 181 307 68 34 chr3 178888596 178888684 -48635894 - MIR SINE MIR -170 92 2 366 231 26 109 chr3 178888832 178888988 -48635590 + Charlie8 DNA MER1_type 1 143 -2274 2441 279 60 31 chr3 178889258 178891076 -48633502 + Charlie8 DNA MER1_type 482 2391 -26 293 331 33 33 chr3 178891099 178891250 -48633328 + L2 LINE L2 3159 3309 -4 1132 199 82 0 chr3 178892229 178892496 -48632082 - L1MC4a LINE L1 -86 7722 7434 24 0 0 0 chr3 178892594 178892618 -48631960 + AT_rich Low_complexity Low_complexity 1 24 0 1365 254 121 57 chr3 178892643 178893501 -48631077 - L2 LINE L2 -5 3308 2420 185 265 61 0 chr3 178893966 178894015 -48630563 + L2 LINE L2 2967 3018 -254 189 311 202 8 chr3 178894116 178894235 -48630343 + MIR3 SINE MIR 66 207 -1 243 350 15 44 chr3 178894344 178894481 -48630097 + L2 LINE L2 3138 3270 -2 664 256 6 11 chr3 178894563 178894739 -48629839 + MER5B DNA MER1_type 2 176 -2 2083 136 0 0 chr3 178894788 178895089 -48629489 - AluSg SINE Alu -9 301 1 318 202 12 83 chr3 178895158 178895242 -48629336 - MIR SINE MIR -150 112 35 190 297 125 0 chr3 178895524 178895588 -48628990 + MIR3 SINE MIR 11 82 -126 240 269 244 8 chr3 178895713 178895832 -48628746 - MER5A DNA MER1_type 0 189 43 378 0 0 0 chr3 178896323 178896365 -48628213 + (TG)n Simple_repeat Simple_repeat 2 43 0 251 238 112 77 chr3 178896507 178896650 -48627928 - MIR SINE MIR -45 217 70 1354 107 10 15 chr3 178896863 178897068 -48627510 + L1PA10 LINE L1 5963 6166 -2 21 0 0 0 chr3 178898131 178898152 -48626426 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 178899845 178899866 -48624712 + AT_rich Low_complexity Low_complexity 1 21 0 276 250 14 0 chr3 178899952 178900024 -48624554 + L2 LINE L2 3200 3272 0 279 254 60 0 chr3 178900588 178900655 -48623923 + L2 LINE L2 3161 3231 -41 188 218 164 0 chr3 178900803 178900858 -48623720 + MIR SINE MIR 125 188 -74 189 0 0 0 chr3 178900858 178900879 -48623699 + (A)n Simple_repeat Simple_repeat 1 21 0 251 246 35 0 chr3 178901003 178901060 -48623518 - MIR SINE MIR -181 81 23 2369 104 0 0 chr3 178901062 178901370 -48623208 - AluSg SINE Alu -2 308 1 477 238 106 25 chr3 178901977 178902137 -48622441 - MER5B DNA MER1_type 0 178 6 21 57 0 0 chr3 178902458 178902493 -48622085 + AT_rich Low_complexity Low_complexity 1 35 0 5049 102 11 3 chr3 178903044 178904029 -48620549 + L1PA10 LINE L1 5004 6000 -168 231 176 14 27 chr3 178904602 178904676 -48619902 + GA-rich Low_complexity Low_complexity 2 74 0 271 276 125 17 chr3 178904881 178905105 -48619473 + Charlie8 DNA MER1_type 40 1395 -1022 471 292 58 0 chr3 178905277 178905397 -48619181 + L2 LINE L2 3144 3270 -2 337 291 16 8 chr3 178905988 178906115 -48618463 - Charlie8 DNA MER1_type -2192 225 98 333 0 0 0 chr3 178907160 178907197 -48617381 + (CA)n Simple_repeat Simple_repeat 2 38 0 328 36 96 0 chr3 178907197 178907280 -48617298 + (TA)n Simple_repeat Simple_repeat 1 91 0 447 268 10 0 chr3 178907372 178907469 -48617109 + MER5A DNA MER1_type 13 110 -79 1786 109 17 38 chr3 178907671 178907964 -48616614 + AluSx SINE Alu 26 312 0 12910 48 3 2 chr3 178908200 178910596 -48613982 + L1PA5 LINE L1 3727 6147 -7 24 0 0 0 chr3 178910600 178910624 -48613954 + AT_rich Low_complexity Low_complexity 1 24 0 419 336 90 40 chr3 178910789 178911110 -48613468 - L2 LINE L2 -9 3263 2927 202 351 14 0 chr3 178911127 178911201 -48613377 + MIR SINE MIR 107 181 -81 2392 141 28 94 chr3 178911292 178911775 -48612803 + L1MB8 LINE L1 5630 6069 -109 2546 64 0 16 chr3 178911775 178912089 -48612489 - AluSc SINE Alu 0 309 1 2392 141 28 94 chr3 178912089 178912187 -48612391 + L1MB8 LINE L1 6069 6172 -6 380 238 24 0 chr3 178912221 178912305 -48612273 - MIR SINE MIR -36 226 141 553 291 73 7 chr3 178912426 178912577 -48612001 + MIR SINE MIR 18 178 -84 662 323 69 4 chr3 178913382 178913658 -48610920 + L2 LINE L2 2457 2750 -564 280 131 33 16 chr3 178913688 178913749 -48610829 + L1M1 LINE L1 5386 5447 -855 4874 115 20 36 chr3 178913749 178914604 -48609974 - Tigger4(Zombi) DNA MER2_type 0 2731 1891 606 129 0 0 chr3 178914602 178914695 -48609883 - Tigger4(Zombi) DNA MER2_type -2638 93 1 * 1859 199 79 66 chr3 178914702 178915320 -48609258 + L1ME3 LINE L1 5453 6078 -84 201 94 0 0 chr3 178915321 178915353 -48609225 + (TG)n Simple_repeat Simple_repeat 1 32 0 187 331 35 56 chr3 178915426 178915568 -48609010 + L2 LINE L2 2776 2914 -400 * 499 286 67 22 chr3 178915548 178915772 -48608806 + L2 LINE L2 3076 3309 -4 23 33 0 0 chr3 178915907 178915937 -48608641 + AT_rich Low_complexity Low_complexity 1 30 0 277 310 96 35 chr3 178916054 178916251 -48608327 - L2 LINE L2 -1770 1544 1336 260 266 5 71 chr3 178916892 178917076 -48607502 + L1M4 LINE L1 2210 2381 -3765 240 194 32 16 chr3 178917234 178917296 -48607282 + MLT1J LTR MaLR 100 162 -349 326 226 67 85 chr3 178917442 178917606 -48606972 + LTR67 LTR ERVL 357 517 -40 289 358 78 28 chr3 178917713 178917931 -48606647 - L2 LINE L2 -226 3046 2818 289 266 119 32 chr3 178920130 178920348 -48604230 + MLT1L LTR MaLR 55 291 -324 339 314 154 0 chr3 178921146 178921302 -48603276 - MIR SINE MIR 0 262 83 402 261 145 25 chr3 178921855 178922096 -48602482 + L1ME4a LINE L1 5799 6068 -53 22 0 0 0 chr3 178922559 178922581 -48601997 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 178922853 178922876 -48601702 + AT_rich Low_complexity Low_complexity 1 23 0 295 261 15 0 chr3 178923547 178923612 -48600966 - L2 LINE L2 -2 3270 3205 494 294 215 36 chr3 178925167 178925779 -48598799 - L2 LINE L2 -814 2500 1999 693 254 17 11 chr3 178925779 178925956 -48598622 - MER5B DNA MER1_type 0 178 1 494 294 215 36 chr3 178925956 178926323 -48598255 - L2 LINE L2 -1315 1999 1345 315 274 24 0 chr3 178926973 178927057 -48597521 + MER81 DNA DNA 29 114 0 2469 106 20 3 chr3 178927262 178927620 -48596958 + THE1B LTR MaLR 1 364 0 240 278 90 21 chr3 178929609 178929843 -48594735 + L1ME4a LINE L1 5715 5964 -157 1884 131 80 17 chr3 178930018 178930370 -48594208 - THE1C LTR MaLR -1 374 1 276 279 132 97 chr3 178930627 178930900 -48593678 + MLT1K LTR MaLR 73 335 -253 2643 76 6 6 chr3 178930900 178931254 -48593324 - THE1A LTR MaLR 0 355 2 11555 98 4 3 chr3 178931255 178932834 -48591744 - THE1A-int LTR MaLR 0 1580 1 2554 107 3 0 chr3 178932834 178933188 -48591390 - THE1A LTR MaLR 0 355 1 276 279 132 97 chr3 178933188 178933291 -48591287 + MLT1K LTR MaLR 334 465 -123 241 229 14 0 chr3 178933666 178933736 -48590842 + L1ME4a LINE L1 5798 5868 -253 340 237 11 0 chr3 178933770 178933863 -48590715 + L1ME4a LINE L1 5961 6054 -67 286 241 36 9 chr3 178934088 178934163 -48590415 + L1ME4a LINE L1 5968 6048 -73 1826 176 0 37 chr3 178934163 178934487 -48590091 - AluJb SINE Alu 0 312 1 286 241 36 9 chr3 178934487 178934523 -48590055 + L1ME4a LINE L1 6048 6082 -39 2666 187 48 12 chr3 178934554 178935056 -48589522 - MLT2B1 LTR ERVL 0 520 1 354 23 0 0 chr3 178935328 178935371 -48589207 + (CA)n Simple_repeat Simple_repeat 2 44 0 24 32 0 0 chr3 178935378 178935409 -48589169 + AT_rich Low_complexity Low_complexity 1 31 0 601 339 8 16 chr3 178935490 178935732 -48588846 - MIR SINE MIR -18 244 5 323 353 59 29 chr3 178936352 178936658 -48587920 - L2 LINE L2 -1185 2129 1815 340 254 231 40 chr3 178936849 178937022 -48587556 - MIR SINE MIR -26 236 31 2487 101 20 0 chr3 178937398 178937746 -48586832 - THE1A LTR MaLR 0 355 1 11077 100 20 7 chr3 178937748 178939306 -48585272 - THE1A-int LTR MaLR -2 1578 1 2611 86 8 28 chr3 178939306 178939432 -48585146 - THE1A LTR MaLR 0 355 228 2369 92 0 3 chr3 178939432 178939727 -48584851 - AluSq SINE Alu -18 295 2 2611 86 8 28 chr3 178939727 178939962 -48584616 - THE1A LTR MaLR -127 228 1 279 0 0 0 chr3 178941513 178941544 -48583034 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 866 314 12 0 chr3 178941794 178942039 -48582539 + MIR SINE MIR 14 261 -1 249 284 15 0 chr3 178942072 178942139 -48582439 + L2 LINE L2 3246 3313 0 2293 88 7 23 chr3 178943251 178943556 -48581022 - AluSc SINE Alu -9 300 1 207 373 18 30 chr3 178943625 178943794 -48580784 - L2 LINE L2 -781 2533 2367 251 327 0 56 chr3 178943996 178944103 -48580475 - L2 LINE L2 -601 2713 2613 189 253 69 35 chr3 178944596 178944683 -48579895 + MIR SINE MIR 118 207 -55 228 221 44 106 chr3 178945497 178945610 -48578968 + MER5A DNA MER1_type 41 146 -43 1174 135 78 5 chr3 178947001 178947194 -48577384 - AluJb SINE Alu -24 288 82 232 242 165 33 chr3 178947788 178947879 -48576699 - MIR SINE MIR -34 228 126 1989 153 0 10 chr3 178947943 178948244 -48576334 - AluJb SINE Alu -14 298 1 180 278 0 0 chr3 178948274 178948310 -48576268 - L3 LINE CR1 -1490 87 52 600 257 80 6 chr3 178949224 178949449 -48575129 + MIR SINE MIR 7 243 -19 23 33 0 0 chr3 178950115 178950145 -48574433 + AT_rich Low_complexity Low_complexity 1 30 0 802 290 34 0 chr3 178951495 178951733 -48572845 - MIR SINE MIR 0 262 17 196 346 8 8 chr3 178951742 178951834 -48572744 + MIR SINE MIR 30 121 -87 253 284 62 0 chr3 178952955 178953036 -48571542 - MER117 DNA MER1_type -106 91 6 2141 133 56 14 chr3 178953831 178954191 -48570387 - THE1C LTR MaLR 0 375 1 743 187 60 123 chr3 178954826 178955094 -48569484 + MER112 DNA MER1_type 2 252 -4 23 0 0 0 chr3 178958310 178958333 -48566245 + AT_rich Low_complexity Low_complexity 1 23 0 1444 121 24 0 chr3 178958635 178958841 -48565737 + AluSq SINE Alu 89 299 -14 2507 62 0 3 chr3 178959628 178959935 -48564643 - AluY SINE Alu -5 306 1 543 86 0 12 chr3 178960211 178960292 -48564286 - L1PA8 LINE L1 -2 6170 6091 558 249 24 35 chr3 178960832 178961001 -48563577 + MIR3 SINE MIR 24 190 -18 189 0 0 0 chr3 178961215 178961236 -48563342 + (CTAA)n Simple_repeat Simple_repeat 2 22 0 242 263 53 0 chr3 178961760 178961817 -48562761 - L2 LINE L2 -27 3286 3227 858 293 172 17 chr3 178961994 178962878 -48561700 - L2 LINE L2 0 3313 2300 2059 116 17 3 chr3 178962878 178963172 -48561406 + AluSg SINE Alu 1 298 -12 23 0 0 0 chr3 178965375 178965398 -48559180 + AT_rich Low_complexity Low_complexity 1 23 0 184 211 0 0 chr3 178966176 178966214 -48558364 + L2 LINE L2 3188 3225 -88 1109 193 137 0 chr3 178966273 178966558 -48558020 - MER33 DNA MER1_type 0 324 1 258 302 83 79 chr3 178966789 178967259 -48557319 - L2 LINE L2 -666 2648 2177 751 281 157 22 chr3 178968932 178969345 -48555233 + L2 LINE L2 2507 2975 -339 285 267 186 23 chr3 178969504 178969676 -48554902 + L2 LINE L2 3113 3312 -1 362 308 46 15 chr3 178969692 178969822 -48554756 + L2 LINE L2 3175 3308 -5 277 295 70 39 chr3 178970613 178970742 -48553836 - L2 LINE L2 -4 3268 3136 319 305 149 36 chr3 178971811 178972682 -48551896 + L2 LINE L2 859 1828 -1486 182 367 32 6 chr3 178972853 178973011 -48551567 + L2 LINE L2 2379 2540 -774 745 211 58 23 chr3 178973019 178973190 -48551388 - MER5A DNA MER1_type -1 188 12 1346 173 113 48 chr3 178973196 178973567 -48551011 - L1MB8 LINE L1 0 6178 5784 516 323 98 48 chr3 178973920 178974319 -48550259 + L2 LINE L2 2849 3267 -5 420 218 147 13 chr3 178975325 178975481 -48549097 - MIR SINE MIR -14 248 72 184 283 9 97 chr3 178975940 178976053 -48548525 + MIR SINE MIR 130 232 -30 1280 170 47 18 chr3 178976089 178976365 -48548213 + MER33 DNA MER1_type 6 289 -35 7562 109 40 21 chr3 178976365 178976885 -48547693 - Tigger3b DNA MER2_type -1797 1231 722 2114 132 0 3 chr3 178976885 178977189 -48547389 + AluSg SINE Alu 5 307 -3 7562 109 40 21 chr3 178977189 178977855 -48546723 - Tigger3b DNA MER2_type -2306 722 23 2238 123 0 3 chr3 178977920 178978230 -48546348 - AluSg SINE Alu -1 309 1 379 154 51 0 chr3 178982449 178982527 -48542051 + L1PA12 LINE L1 6085 6166 -2 574 324 85 45 chr3 178982794 178983242 -48541336 + L2 LINE L2 994 1459 -1855 302 219 0 85 chr3 178983459 178983541 -48541037 + LTR16C LTR ERVL 417 491 0 275 355 28 0 chr3 178983544 178983685 -48540893 + L2 LINE L2 1480 1624 -1690 247 340 75 38 chr3 178984133 178984398 -48540180 + L2 LINE L2 2630 2904 -410 289 403 21 47 chr3 178984414 178984650 -48539928 - L2 LINE L2 0 3272 3043 212 178 96 68 chr3 178985250 178985323 -48539255 + L2 LINE L2 3140 3214 -58 267 254 0 15 chr3 178986498 178986565 -48538013 + MLT1K LTR MaLR 201 266 -322 181 304 0 54 chr3 178987385 178987441 -48537137 + MIR SINE MIR 20 72 -136 322 310 108 19 chr3 178989239 178989397 -48535181 - MER5B DNA MER1_type 0 178 7 1676 221 124 34 chr3 178989875 178989907 -48534671 - MLT2B1 LTR ERVL -8 512 484 414 0 0 0 chr3 178989907 178989953 -48534625 + (TG)n Simple_repeat Simple_repeat 2 47 0 1676 221 124 34 chr3 178989953 178990386 -48534192 - MLT2B1 LTR ERVL -36 484 5 348 272 44 9 chr3 178990897 178991011 -48533567 - L2 LINE L2 -2 3311 3194 3558 122 23 2 chr3 178991599 178992131 -48532447 + L1MC1 LINE L1 5786 6328 -5 23 0 0 0 chr3 178992131 178992154 -48532424 + AT_rich Low_complexity Low_complexity 1 23 0 185 281 145 103 chr3 178992360 178992787 -48531791 + L2 LINE L2 2828 3272 0 5509 257 104 30 chr3 178994139 178996073 -48528505 + L2 LINE L2 512 2590 -724 225 244 0 0 chr3 178997194 178997239 -48527339 + L2 LINE L2 2546 2590 -724 188 167 56 0 chr3 178997431 178997503 -48527075 + (TA)n Simple_repeat Simple_repeat 2 77 0 300 311 38 28 chr3 178998076 178998182 -48526396 + MIR SINE MIR 37 143 -65 283 287 46 11 chr3 178998603 178998690 -48525888 - L2 LINE L2 -62 3210 3121 2549 58 3 0 chr3 178998912 178999221 -48525357 - AluY SINE Alu -1 310 1 721 341 125 34 chr3 179001684 179003007 -48521571 - L2 LINE L2 0 3272 1808 420 263 128 6 chr3 179003020 179003176 -48521402 + MIR SINE MIR 82 256 -6 1337 204 72 42 chr3 179003766 179004143 -48520435 + Charlie4a DNA MER1_type 40 427 -81 450 318 54 0 chr3 179004552 179004681 -48519897 + L2 LINE L2 3116 3251 -21 693 245 76 0 chr3 179004840 179005024 -48519554 + MIR SINE MIR 65 262 0 3611 227 84 34 chr3 179006060 179008240 -48516338 + L1MC3 LINE L1 4138 5403 -743 2323 110 0 0 chr3 179009634 179009944 -48514634 - AluSx SINE Alu -2 310 1 294 219 50 50 chr3 179009980 179010099 -48514479 - MIR SINE MIR -83 179 61 1104 243 194 19 chr3 179010879 179011307 -48513271 - L2 LINE L2 0 3313 2811 272 288 192 64 chr3 179011865 179012084 -48512494 + L2 LINE L2 2929 3175 -97 545 295 71 11 chr3 179012504 179012785 -48511793 + L1ME4a LINE L1 5620 5917 -204 191 321 58 51 chr3 179013706 179013843 -48510735 + MIR SINE MIR 29 166 -96 2209 114 0 3 chr3 179014532 179014829 -48509749 - AluSg SINE Alu -14 296 1 303 214 0 0 chr3 179014829 179014885 -48509693 - MER94 DNA DNA -77 57 2 249 318 15 0 chr3 179015427 179015493 -48509085 + L2 LINE L2 3201 3267 -5 236 89 0 125 chr3 179016260 179016279 -48508299 + (TTTTC)n Simple_repeat Simple_repeat 2 22 -28 1559 81 0 10 chr3 179016279 179016477 -48508101 - L1PA6 LINE L1 -2 6152 5957 236 89 0 125 chr3 179016477 179016513 -48508065 + (TTTTC)n Simple_repeat Simple_repeat 22 50 0 230 314 51 22 chr3 179017562 179017699 -48506879 - L2 LINE L2 -162 3110 2970 437 365 35 15 chr3 179017888 179018085 -48506493 - L2 LINE L2 -543 2771 2571 36 44 0 15 chr3 179019665 179019718 -48504860 + AT_rich Low_complexity Low_complexity 1 54 -13 2400 94 30 86 chr3 179019718 179019833 -48504745 - L1PA8 LINE L1 -18 6154 6034 2421 54 7 3 chr3 179019833 179020131 -48504447 - AluY SINE Alu -12 299 1 2400 94 30 86 chr3 179020131 179020420 -48504158 - L1PA8 LINE L1 -138 6034 5773 36 44 0 15 chr3 179020420 179020434 -48504144 + AT_rich Low_complexity Low_complexity 54 67 0 454 301 41 7 chr3 179021123 179021269 -48503309 - MIR SINE MIR -55 207 57 23 33 0 0 chr3 179022759 179022789 -48501789 + AT_rich Low_complexity Low_complexity 1 30 0 2917 3 0 0 chr3 179022867 179023178 -48501400 - AluYa5 SINE Alu 0 311 1 244 287 85 0 chr3 179025192 179025286 -48499292 - MARNA DNA Mariner -70 516 415 1772 273 69 12 chr3 179025345 179025996 -48498582 + L1M4 LINE L1 3509 4196 -1950 496 266 135 35 chr3 179026128 179026410 -48498168 - L2 LINE L2 0 3313 3004 561 252 57 31 chr3 179027135 179027294 -48497284 - MIR SINE MIR -97 165 3 2422 67 0 10 chr3 179027557 179027854 -48496724 + AluY SINE Alu 1 294 -17 336 102 0 0 chr3 179027859 179027908 -48496670 + (GGAA)n Simple_repeat Simple_repeat 4 52 0 1044 203 16 0 chr3 179028459 179028641 -48495937 - MER58A DNA MER1_type -38 186 2 357 272 0 12 chr3 179028672 179028753 -48495825 + MER5A DNA MER1_type 2 81 -108 * 882 219 28 0 chr3 179028743 179028921 -48495657 - MER5A DNA MER1_type -6 183 1 279 219 83 0 chr3 179030882 179030978 -48493600 + L1ME LINE L1 5751 5854 -267 180 0 0 0 chr3 179031407 179031427 -48493151 + (A)n Simple_repeat Simple_repeat 1 20 0 209 30 61 0 chr3 179031437 179031470 -48493108 + (CAAG)n Simple_repeat Simple_repeat 2 36 0 2480 214 108 17 chr3 179031780 179032444 -48492134 + MER50 LTR ERV1 10 734 0 23 0 0 0 chr3 179032932 179032955 -48491623 + AT_rich Low_complexity Low_complexity 1 23 0 603 188 20 0 chr3 179034869 179034970 -48489608 + MER81 DNA DNA 1 103 -11 653 299 126 11 chr3 179035515 179035880 -48488698 - MLT1I LTR MaLR -2 407 1 2239 107 10 0 chr3 179035930 179036239 -48488339 - AluSp SINE Alu -1 312 1 188 297 63 63 chr3 179036239 179036350 -48488228 + MER5B DNA MER1_type 49 159 -19 301 269 30 0 chr3 179036241 179036308 -48488270 - MER5A DNA MER1_type -50 139 71 220 330 77 44 chr3 179036391 179036482 -48488096 - MIR3 SINE MIR -110 98 5 1097 161 16 0 chr3 179037315 179037508 -48487070 - L1MA7 LINE L1 -2 6289 6094 195 439 47 0 chr3 179037582 179037689 -48486889 + L2 LINE L2 3139 3250 -22 274 313 50 20 chr3 179037787 179037886 -48486692 + L2 LINE L2 2864 2965 -349 1648 261 102 12 chr3 179038435 179039241 -48485337 + L2 LINE L2 2416 3308 -5 211 328 0 0 chr3 179042260 179042318 -48482260 + L2 LINE L2 3215 3272 0 2129 132 0 0 chr3 179042322 179042625 -48481953 + AluSx SINE Alu 1 303 -9 246 349 116 17 chr3 179042641 179042813 -48481765 + L2 LINE L2 2865 3053 -260 320 308 0 0 chr3 179042978 179043082 -48481496 + MIR SINE MIR 52 154 -62 390 249 109 101 chr3 179043523 179043780 -48480798 - MIR SINE MIR 0 262 4 428 263 88 15 chr3 179044139 179044276 -48480302 - MIR3 SINE MIR 0 208 62 711 215 95 25 chr3 179044304 179044462 -48480116 - MIR SINE MIR -59 203 35 714 221 40 35 chr3 179045790 179045859 -48478719 - MIR SINE MIR 0 262 195 1178 133 27 21 chr3 179045859 179046047 -48478531 + MER5A DNA MER1_type 1 189 0 714 221 40 35 chr3 179046047 179046176 -48478402 - MIR SINE MIR -67 195 63 23 0 0 0 chr3 179046313 179046336 -48478242 + AT_rich Low_complexity Low_complexity 1 23 0 372 269 172 0 chr3 179047070 179047215 -48477363 - MIR SINE MIR -73 189 20 1952 170 54 104 chr3 179047255 179047737 -48476841 + LTR32 LTR ERVL 14 471 0 185 247 104 39 chr3 179047780 179047857 -48476721 + L2 LINE L2 2120 2201 -1113 2272 212 51 26 chr3 179048961 179049494 -48475084 + L1ME3 LINE L1 5613 6158 -4 199 302 0 19 chr3 179049752 179049805 -48474773 - MIR SINE MIR -166 96 45 766 171 16 16 chr3 179049890 179050019 -48474559 + FRAM SINE Alu 38 166 -10 1109 157 22 5 chr3 179050182 179050367 -48474211 - MER53 DNA DNA 0 189 2 2354 87 0 19 chr3 179050961 179051270 -48473308 + AluY SINE Alu 1 303 -8 439 256 117 7 chr3 179051969 179052106 -48472472 - L2 LINE L2 -2 3311 3160 558 283 69 28 chr3 179053077 179053324 -48471254 - MIR SINE MIR 0 262 6 2372 89 3 13 chr3 179053629 179053945 -48470633 - AluSp SINE Alu 0 313 1 2159 115 0 7 chr3 179054666 179054962 -48469616 + AluSg SINE Alu 1 294 -16 657 198 117 61 chr3 179055767 179056014 -48468564 - MIR SINE MIR 0 262 2 211 278 0 0 chr3 179056282 179056354 -48468224 + (TA)n Simple_repeat Simple_repeat 1 72 0 410 310 9 0 chr3 179056355 179056468 -48468110 + L2 LINE L2 3196 3309 -4 2145 230 48 89 chr3 179056479 179056490 -48468088 - L2 LINE L2 0 3313 3303 1839 131 0 64 chr3 179056490 179056804 -48467774 + AluJo SINE Alu 9 302 -10 2145 230 48 89 chr3 179056804 179057695 -48466883 - L2 LINE L2 -10 3303 2470 1558 172 6 60 chr3 179057695 179058014 -48466564 - AluJo SINE Alu -10 302 1 2145 230 48 89 chr3 179058014 179058230 -48466348 - L2 LINE L2 -843 2470 2247 274 253 48 0 chr3 179058403 179058486 -48466092 - MIR SINE MIR -59 203 117 208 319 21 32 chr3 179059555 179059649 -48464929 - MIR SINE MIR 0 262 170 1227 152 22 165 chr3 179060305 179060867 -48463711 + Charlie5 DNA MER1_type 1 2624 0 315 146 0 0 chr3 179061255 179061310 -48463268 + (TG)n Simple_repeat Simple_repeat 1 55 0 292 71 36 18 chr3 179062231 179062287 -48462291 + (TTTC)n Simple_repeat Simple_repeat 4 60 0 1891 156 10 16 chr3 179062293 179062607 -48461971 - AluJo SINE Alu 0 312 1 195 129 0 0 chr3 179063687 179063718 -48460860 + (T)n Simple_repeat Simple_repeat 1 31 0 2095 92 14 20 chr3 179063981 179064275 -48460303 + AluSp SINE Alu 1 292 -21 307 255 13 0 chr3 179064277 179064376 -48460202 - L1MCa LINE L1 -1339 6983 1992 240 111 0 0 chr3 179064376 179064412 -48460166 + (CA)n Simple_repeat Simple_repeat 1 36 0 1767 235 91 13 chr3 179064539 179065003 -48459575 + MLT1F1 LTR MaLR 68 567 0 345 287 70 9 chr3 179065031 179065146 -48459432 + L2 LINE L2 3150 3271 -1 206 245 20 0 chr3 179065146 179065195 -48459383 + GA-rich Low_complexity Low_complexity 1 50 0 220 296 91 23 chr3 179065874 179065962 -48458616 + L3b LINE CR1 1482 1575 -8 1248 203 164 4 chr3 179067918 179068174 -48456404 - AluSg SINE Alu -3 297 1 1695 184 3 13 chr3 179068577 179068881 -48455697 + AluJb SINE Alu 1 301 -11 303 284 37 0 chr3 179069321 179069402 -48455176 + MIR SINE MIR 79 162 -100 994 310 93 29 chr3 179069677 179070514 -48454064 + L2 LINE L2 2167 3313 0 205 323 124 38 chr3 179071753 179071939 -48452639 - MIR SINE MIR -49 213 12 310 256 201 55 chr3 179073729 179073893 -48450685 + MER5A DNA MER1_type 2 189 0 536 215 208 0 chr3 179075095 179075244 -48449334 + MER5A DNA MER1_type 9 188 -1 215 271 0 0 chr3 179075646 179075694 -48448884 + MER5B DNA MER1_type 1 48 -130 1221 15 0 0 chr3 179075694 179075831 -48448747 + L1HS LINE L1 6019 6155 0 189 0 0 0 chr3 179075834 179075855 -48448723 + (A)n Simple_repeat Simple_repeat 1 21 0 213 275 120 56 chr3 179075855 179075997 -48448581 - MER5A DNA MER1_type -28 161 11 672 191 17 108 chr3 179076482 179076723 -48447855 - MER112 DNA MER1_type -9 251 33 459 241 98 53 chr3 179078857 179079059 -48445519 + MIR SINE MIR 3 215 -47 2441 81 10 3 chr3 179079830 179080138 -48444440 + AluSp SINE Alu 1 310 -3 320 256 131 60 chr3 179080626 179080794 -48443784 - MIR SINE MIR -73 189 10 271 336 9 9 chr3 179080957 179081073 -48443505 + GA-rich Low_complexity Low_complexity 2 117 0 210 37 0 0 chr3 179082055 179082082 -48442496 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2054 121 0 7 chr3 179082083 179082364 -48442214 - AluSx SINE Alu -33 279 1 263 351 19 58 chr3 179083357 179083511 -48441067 - L2 LINE L2 -556 2758 2611 423 263 117 39 chr3 179083791 179083996 -48440582 - MIR SINE MIR -11 251 31 271 200 0 13 chr3 179084264 179084339 -48440239 + L1MC4a LINE L1 4975 5048 -1098 845 293 170 18 chr3 179084518 179085071 -48439507 + L1MC4a LINE L1 5296 5932 -1876 360 103 0 0 chr3 179085080 179085138 -48439440 + (TG)n Simple_repeat Simple_repeat 2 59 0 26 0 0 0 chr3 179085671 179085697 -48438881 + AT_rich Low_complexity Low_complexity 1 26 0 242 148 37 37 chr3 179087244 179087298 -48437280 + L1M1 LINE L1 3327 3380 -4185 274 303 53 53 chr3 179088046 179088178 -48436400 + L3 LINE CR1 119 250 -1327 357 357 150 30 chr3 179089593 179089926 -48434652 + L3 LINE CR1 519 891 -686 261 348 94 22 chr3 179090121 179090345 -48434233 + L2 LINE L2 2725 2964 -350 997 292 63 24 chr3 179091484 179091895 -48432683 - L2 LINE L2 -83 3230 2804 195 100 0 0 chr3 179092621 179092651 -48431927 + (TTTTA)n Simple_repeat Simple_repeat 2 31 0 920 101 17 0 chr3 179092652 179092771 -48431807 - BC200 scRNA scRNA -79 121 1 40 49 0 0 chr3 179092837 179092898 -48431680 + AT_rich Low_complexity Low_complexity 1 61 0 729 290 60 24 chr3 179093148 179093400 -48431178 + MIR SINE MIR 1 261 -1 255 174 22 0 chr3 179093888 179093934 -48430644 + L2 LINE L2 3267 3313 0 1724 165 95 6 chr3 179095805 179096120 -48428458 + MER2 DNA MER2_type 2 344 0 260 301 178 0 chr3 179096909 179097072 -48427506 + MIR SINE MIR 7 198 -64 338 309 10 0 chr3 179097417 179097514 -48427064 + L2 LINE L2 3216 3313 0 1390 257 73 11 chr3 179098836 179099217 -48425361 + MLT1I LTR MaLR 1 405 -4 186 103 0 0 chr3 179099400 179099429 -48425149 + (TTTTTG)n Simple_repeat Simple_repeat 1 29 0 367 316 10 10 chr3 179099504 179099602 -48424976 + MIR3 SINE MIR 62 159 -49 243 217 17 0 chr3 179099718 179099778 -48424800 + MER102b DNA MER1_type 91 151 -190 451 272 8 24 chr3 179099792 179099917 -48424661 - L2 LINE L2 0 3313 3191 544 233 64 45 chr3 179099918 179100120 -48424458 + MER102b DNA MER1_type 135 340 -1 237 298 36 0 chr3 179101395 179101479 -48423099 - MIR SINE MIR -2 260 174 469 244 15 8 chr3 179101501 179101632 -48422946 + LTR33 LTR ERVL 1 132 -389 519 212 235 0 chr3 179101756 179101926 -48422652 + LTR33 LTR ERVL 304 513 -8 435 295 58 19 chr3 179101927 179102083 -48422495 - MIR SINE MIR -98 164 3 390 254 5 114 chr3 179102167 179102368 -48422210 + MIR SINE MIR 60 238 -24 2131 127 0 3 chr3 179103419 179103711 -48420867 - AluSx SINE Alu -21 291 1 513 241 80 12 chr3 179103975 179104137 -48420441 + MIR SINE MIR 80 252 -10 291 306 0 0 chr3 179104232 179104304 -48420274 + L2 LINE L2 3241 3312 -1 2079 177 68 56 chr3 179104642 179105139 -48419439 - MLT1D LTR MaLR -2 503 1 2073 101 32 0 chr3 179105710 179105987 -48418591 - AluSx SINE Alu -1 311 26 2329 78 0 13 chr3 179107611 179107919 -48416659 - AluY SINE Alu -6 305 2 21 0 0 0 chr3 179108791 179108812 -48415766 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 179109518 179109546 -48415032 + AT_rich Low_complexity Low_complexity 1 28 0 282 276 241 0 chr3 179109706 179109822 -48414756 - MIR SINE MIR -72 190 47 975 253 195 18 chr3 179109906 179110555 -48414023 + L2 LINE L2 2553 3312 -1 276 246 14 14 chr3 179113049 179113118 -48411460 - L2 LINE L2 0 3272 3204 2162 216 83 6 chr3 179116055 179116523 -48408055 + MLT1D LTR MaLR 2 505 0 304 392 99 4 chr3 179117957 179118230 -48406348 + L3b LINE CR1 1102 1400 -183 223 258 0 16 chr3 179120129 179120191 -48404387 + (CA)n Simple_repeat Simple_repeat 1 61 0 249 139 0 0 chr3 179120639 179120682 -48403896 + (CA)n Simple_repeat Simple_repeat 1 43 0 180 0 0 0 chr3 179121156 179121176 -48403402 + (A)n Simple_repeat Simple_repeat 1 20 0 1532 214 69 48 chr3 179121176 179121638 -48402940 + L1MD2 LINE L1 5879 6350 -9 2423 74 0 0 chr3 179121669 179121965 -48402613 + AluY SINE Alu 1 296 -15 1979 91 18 7 chr3 179122438 179122724 -48401854 + L1MA4A LINE L1 6014 6302 -1 228 67 0 0 chr3 179123345 179123375 -48401203 + (TTTG)n Simple_repeat Simple_repeat 2 31 0 235 333 123 9 chr3 179123386 179123500 -48401078 + L2 LINE L2 3136 3262 -10 227 281 0 16 chr3 179123552 179123616 -48400962 - Charlie4 DNA MER1_type -16 1945 1883 2020 123 7 23 chr3 179125599 179125909 -48398669 + AluSx SINE Alu 1 305 -7 238 231 93 74 chr3 179129355 179129463 -48395115 + L2 LINE L2 3190 3299 -14 191 105 53 0 chr3 179129484 179129522 -48395056 + GA-rich Low_complexity Low_complexity 3 42 0 2437 160 24 0 chr3 179130089 179130470 -48394108 + MLT1B LTR MaLR 1 390 0 1733 125 117 0 chr3 179130628 179130892 -48393686 - AluSg SINE Alu -15 295 1 258 258 0 47 chr3 179131340 179131440 -48393138 + MIR SINE MIR 38 132 -76 575 244 75 25 chr3 179131469 179131629 -48392949 - MIR SINE MIR -93 169 2 1548 165 7 18 chr3 179132637 179132916 -48391662 + AluJb SINE Alu 1 276 -36 454 281 99 0 chr3 179133228 179133449 -48391129 - HsTC2 DNA Tc2 -3 1895 1653 43786 33 22 1 chr3 179133451 179139468 -48385110 + L1PA2 LINE L1 1 6146 -9 649 221 95 48 chr3 179139468 179139699 -48384879 - HsTC2 DNA Tc2 -200 1698 1281 315 244 202 0 chr3 179139696 179139815 -48384763 - HsTC2 DNA Tc2 -1754 144 2 * 231 279 0 15 chr3 179139909 179139977 -48384601 - MIR SINE MIR -10 252 186 2602 162 46 19 chr3 179140446 179140947 -48383631 + L1MA9 LINE L1 5393 5906 -274 14942 119 15 4 chr3 179140947 179143325 -48381253 + Tigger1 DNA MER2_type 1 2418 0 2158 161 7 17 chr3 179143325 179143736 -48380842 + L1MA9 LINE L1 5905 6311 -1 242 295 90 13 chr3 179143739 179143817 -48380761 - MIR SINE MIR -87 121 38 21891 151 17 11 chr3 179144633 179148226 -48376352 + L1MA2 LINE L1 16 3647 -3918 2485 70 0 3 chr3 179148226 179148528 -48376050 + AluY SINE Alu 1 301 -10 21891 151 17 11 chr3 179148528 179149187 -48375391 + L1MA2 LINE L1 3647 4301 -3264 6106 141 37 3 chr3 179149186 179150679 -48373899 + L1MA2 LINE L1 6177 7716 -7 * 21 0 0 0 chr3 179150679 179150700 -48373878 + AT_rich Low_complexity Low_complexity 1 21 0 364 253 131 38 chr3 179151197 179151434 -48373144 + L1ME4a LINE L1 5847 6105 -16 2414 92 3 0 chr3 179152423 179152729 -48371849 - AluSc SINE Alu -2 307 1 205 182 0 0 chr3 179153717 179153750 -48370828 + (TATATG)n Simple_repeat Simple_repeat 2 34 0 1252 257 85 21 chr3 179153763 179154527 -48370051 + L1ME1 LINE L1 1934 2702 -3513 251 184 61 0 chr3 179154556 179154605 -48369973 - MER2 DNA MER2_type -25 320 269 806 192 17 17 chr3 179154634 179154811 -48369767 - MER2 DNA MER2_type -136 209 33 7404 233 63 18 chr3 179154821 179158177 -48366401 + L1ME1 LINE L1 2720 6231 -4 424 255 97 81 chr3 179159804 179160102 -48364476 + L3 LINE CR1 1243 1545 -32 715 307 104 4 chr3 179160190 179160441 -48364137 + MLT1K LTR MaLR 110 385 -203 1291 202 157 57 chr3 179161269 179161739 -48362839 - LTR33 LTR ERVL -4 517 1 320 289 36 156 chr3 179162417 179162922 -48361656 - L2 LINE L2 -1 3271 2828 302 236 82 9 chr3 179164459 179164569 -48360009 - MLT1L LTR MaLR -354 261 144 850 203 19 6 chr3 179164569 179164727 -48359851 - MER5A DNA MER1_type -4 185 26 474 237 13 45 chr3 179164741 179164897 -48359681 - MLT1L LTR MaLR -458 157 7 771 278 213 0 chr3 179168159 179168540 -48356038 + L2 LINE L2 1490 1951 -1363 234 326 34 0 chr3 179168698 179168787 -48355791 - L2 LINE L2 -495 2819 2728 268 296 193 34 chr3 179168787 179168852 -48355726 + L2 LINE L2 2890 2943 -370 2133 110 32 29 chr3 179168852 179169161 -48355417 - AluSx SINE Alu -2 310 1 268 296 193 34 chr3 179169161 179169328 -48355250 + L2 LINE L2 2943 3159 -154 190 239 22 0 chr3 179169342 179169388 -48355190 - MER5A DNA MER1_type -13 176 130 25 0 0 0 chr3 179169388 179169413 -48355165 + AT_rich Low_complexity Low_complexity 1 25 0 233 264 23 69 chr3 179169750 179169837 -48354741 + MIR3 SINE MIR 85 167 -41 207 0 0 0 chr3 179169949 179169972 -48354606 + (A)n Simple_repeat Simple_repeat 1 23 0 356 320 120 85 chr3 179170419 179170577 -48354001 - L2 LINE L2 -2 3270 3119 1733 162 3 14 chr3 179170577 179170861 -48353717 + AluJb SINE Alu 1 281 -31 356 320 120 85 chr3 179170861 179171018 -48353560 - L2 LINE L2 -153 3119 2944 692 229 67 26 chr3 179171078 179171468 -48353110 + MLT1H LTR MaLR 116 593 -2 2353 81 3 34 chr3 179171799 179172119 -48352459 - AluSg SINE Alu 0 310 1 1070 129 62 24 chr3 179172940 179173150 -48351428 + L1MD2 LINE L1 6140 6357 -2 948 301 67 39 chr3 179173153 179173751 -48350827 + HAL1 LINE L1 102 716 -1791 589 223 0 25 chr3 179173751 179173908 -48350670 - MLT2E LTR ERVL 0 628 476 1981 190 104 4 chr3 179173913 179174366 -48350212 + MLT1D LTR MaLR 1 498 -7 625 296 182 17 chr3 179174455 179174746 -48349832 - MLT2E LTR ERVL -260 368 30 1931 234 30 123 chr3 179174787 179174915 -48349663 + HAL1 LINE L1 710 848 -1659 2210 98 3 23 chr3 179174915 179175222 -48349356 + AluSx SINE Alu 1 301 -11 1931 234 30 123 chr3 179175222 179175235 -48349343 + HAL1 LINE L1 848 861 -1646 2232 103 0 0 chr3 179175235 179175540 -48349038 + AluSg SINE Alu 1 305 0 1931 234 30 123 chr3 179175540 179175993 -48348585 + HAL1 LINE L1 861 1132 -1375 908 157 0 0 chr3 179175993 179176146 -48348432 + L1PB1 LINE L1 5998 6150 -1 1931 234 30 123 chr3 179176146 179176792 -48347786 + HAL1 LINE L1 1132 1837 -670 592 237 123 51 chr3 179176880 179177255 -48347323 + HAL1 LINE L1 1703 2104 -403 1657 249 25 7 chr3 179177270 179177676 -48346902 + LTR16C LTR ERVL 69 481 -10 720 266 59 11 chr3 179177689 179177975 -48346603 + HAL1 LINE L1 2109 2408 -99 188 163 0 41 chr3 179178097 179178146 -48346432 + GA-rich Low_complexity Low_complexity 2 48 0 2463 60 3 0 chr3 179180000 179180301 -48344277 - AluY SINE Alu -9 302 1 821 268 101 61 chr3 179180446 179180823 -48343755 - L2 LINE L2 -2 3311 2920 414 247 75 46 chr3 179181942 179182116 -48342462 - MER5A DNA MER1_type -3 186 8 204 135 0 0 chr3 179182320 179182357 -48342221 + (TTA)n Simple_repeat Simple_repeat 3 39 0 294 307 150 16 chr3 179182358 179182485 -48342093 - MER5A DNA MER1_type -45 144 1 182 386 16 16 chr3 179182520 179182647 -48341931 + MER5A DNA MER1_type 41 167 -22 * 320 376 8 8 chr3 179182555 179182680 -48341898 - MER5A DNA MER1_type -64 125 1 1636 282 85 6 chr3 179183626 179184154 -48340424 + L2 LINE L2 1106 1675 -1639 543 214 14 0 chr3 179184154 179184299 -48340279 + L2 LINE L2 1966 2112 -1202 2144 118 0 3 chr3 179184761 179185057 -48339521 - AluSp SINE Alu -18 295 1 662 276 119 4 chr3 179185702 179185945 -48338633 - Charlie8 DNA MER1_type -2146 271 1 233 275 122 40 chr3 179186191 179186365 -48338213 + MIR SINE MIR 32 218 -44 4382 251 77 74 chr3 179186370 179188054 -48336524 + L2 LINE L2 1217 2905 -409 539 86 29 19 chr3 179188060 179188165 -48336413 + (TTTC)n Simple_repeat Simple_repeat 2 107 0 366 156 0 0 chr3 179188252 179188316 -48336262 + CT-rich Low_complexity Low_complexity 3 66 0 300 216 328 22 chr3 179188428 179188562 -48336016 + L2 LINE L2 3139 3313 0 * 894 292 97 23 chr3 179188561 179189048 -48335530 + L2 LINE L2 2144 2666 -648 390 223 132 33 chr3 179189207 179189328 -48335250 + L2 LINE L2 3133 3265 -7 1257 137 58 26 chr3 179189638 179189849 -48334729 + AluJb SINE Alu 66 286 -26 471 113 0 0 chr3 179189849 179189920 -48334658 + (TGAA)n Simple_repeat Simple_repeat 3 73 0 1257 137 58 26 chr3 179189920 179189934 -48334644 + AluJb SINE Alu 286 298 -14 274 221 117 48 chr3 179189942 179190087 -48334491 + L2 LINE L2 2860 3014 -258 241 263 20 40 chr3 179190457 179190556 -48334022 + L2 LINE L2 3019 3115 -157 185 108 27 0 chr3 179190557 179190594 -48333984 + (TTG)n Simple_repeat Simple_repeat 2 39 0 1578 104 21 0 chr3 179190611 179190852 -48333726 - L1MA4A LINE L1 0 6303 6058 327 277 100 0 chr3 179191191 179191321 -48333257 - L2 LINE L2 -1191 2123 1981 2330 101 0 0 chr3 179191321 179191618 -48332960 + AluSx SINE Alu 2 298 -14 1911 93 85 0 chr3 179191618 179191875 -48332703 + AluSx SINE Alu 33 312 0 829 173 81 0 chr3 179191876 179192061 -48332517 + Tigger6 DNA MER2_type 1153 1352 -245 409 203 16 57 chr3 179192318 179192441 -48332137 - L2 LINE L2 -1 3312 3195 222 258 30 15 chr3 179193765 179193831 -48330747 + CT-rich Low_complexity Low_complexity 4 70 0 295 244 0 23 chr3 179195358 179195444 -48329134 + L1MC5 LINE L1 7824 7907 -54 22 0 0 0 chr3 179195446 179195468 -48329110 + AT_rich Low_complexity Low_complexity 1 22 0 1014 222 0 0 chr3 179195546 179195717 -48328861 + FAM SINE Alu 1 171 -4 288 264 219 22 chr3 179195726 179195904 -48328674 - MIR SINE MIR -2 260 48 216 306 201 15 chr3 179195987 179196121 -48328457 - MER5B DNA MER1_type 0 178 20 231 36 0 0 chr3 179196892 179196920 -48327658 + (CA)n Simple_repeat Simple_repeat 2 29 0 447 306 0 8 chr3 179197768 179197902 -48326676 + MIR SINE MIR 117 249 -13 3720 183 23 17 chr3 179197920 179198703 -48325875 + L1 LINE L1 4122 4909 -1237 6599 91 20 0 chr3 179198709 179199877 -48324701 + L1PA16 LINE L1 4972 6157 -9 369 0 0 0 chr3 179199878 179199921 -48324657 + (CA)n Simple_repeat Simple_repeat 1 84 0 369 0 0 0 chr3 179199921 179199962 -48324616 + (CA)n Simple_repeat Simple_repeat 2 42 0 537 257 138 25 chr3 179200732 179200985 -48323593 + MLT1K LTR MaLR 1 354 -234 348 200 50 70 chr3 179201040 179201140 -48323438 + MLT1K LTR MaLR 491 588 0 6861 40 10 1 chr3 179201146 179201940 -48322638 + L1PA7 LINE L1 5343 6143 -11 1975 214 68 39 chr3 179202027 179202256 -48322322 + MLT1F LTR MaLR 3 224 -318 396 0 0 0 chr3 179202256 179202300 -48322278 + (CA)n Simple_repeat Simple_repeat 2 45 0 1975 214 68 39 chr3 179202300 179202588 -48321990 + MLT1F LTR MaLR 224 535 -7 814 221 108 36 chr3 179203096 179203291 -48321287 + MER3 DNA MER1_type 1 209 0 4605 126 29 24 chr3 179204803 179206177 -48318401 + pTR5 LTR ERV1 743 2438 0 224 163 0 20 chr3 179206694 179206743 -48317835 + CT-rich Low_complexity Low_complexity 3 50 0 21 0 0 0 chr3 179207190 179207211 -48317367 + AT_rich Low_complexity Low_complexity 1 21 0 1107 160 39 19 chr3 179207328 179207534 -48317044 - AluJo SINE Alu -2 310 101 252 252 117 19 chr3 179207585 179207688 -48316890 - MIR SINE MIR -69 193 81 2575 162 19 21 chr3 179208971 179209398 -48315180 - MSTB LTR MaLR 0 426 1 285 280 170 0 chr3 179209433 179209533 -48315045 - MIR3 SINE MIR -54 154 38 2700 202 6 24 chr3 179211240 179211774 -48312804 + Charlie1a DNA MER1_type 27 550 -905 827 242 194 59 chr3 179211805 179212314 -48312264 - MLT1L LTR MaLR 0 615 38 223 271 14 14 chr3 179212376 179212446 -48312132 + MER5A DNA MER1_type 1 70 -119 322 246 0 7 chr3 179212446 179212565 -48312013 - MER5A DNA MER1_type -8 181 6 182 377 0 29 chr3 179212963 179213032 -48311546 - L2 LINE L2 -371 2942 2876 607 146 97 151 chr3 179213124 179213176 -48311402 + MER5B DNA MER1_type 1 54 -124 1954 150 10 0 chr3 179213176 179213470 -48311108 + AluJb SINE Alu 1 297 -15 607 146 97 151 chr3 179213470 179213602 -48310976 + MER5B DNA MER1_type 54 175 -3 2212 93 10 0 chr3 179216774 179217065 -48307513 - AluSx SINE Alu -18 294 1 486 180 0 23 chr3 179217098 179217226 -48307352 + GA-rich Low_complexity Low_complexity 3 127 0 776 125 0 0 chr3 179217612 179217724 -48306854 + MSTB1 LTR MaLR 1 112 -320 1352 125 5 0 chr3 179217745 179217937 -48306641 + MSTB1 LTR MaLR 227 419 -13 365 207 0 69 chr3 179217964 179218080 -48306498 + L1ME LINE L1 5713 5820 -301 238 291 63 16 chr3 179218091 179218218 -48306360 + L1MCc LINE L1 23 155 -6268 331 336 48 0 chr3 179218231 179218377 -48306201 - L1M3e LINE L1 -6579 451 299 1349 255 115 44 chr3 179218438 179218566 -48306012 - L1MC3 LINE L1 -1504 6281 6163 2769 56 80 39 chr3 179218566 179218956 -48305622 - L1PA8 LINE L1 -2 6170 5765 1349 255 115 44 chr3 179218956 179219392 -48305186 - L1MC3 LINE L1 -1622 6163 5677 3356 148 32 2 chr3 179219392 179219927 -48304651 + MER34C LTR ERV1 35 585 0 1633 189 28 79 chr3 179219932 179220268 -48304310 - L1MC3 LINE L1 -498 5668 5380 2168 93 0 4 chr3 179220268 179220548 -48304030 - AluY SINE Alu -32 279 1 1633 189 28 79 chr3 179220548 179220839 -48303739 - L1MC3 LINE L1 -786 5380 5076 753 164 9 140 chr3 179220840 179221054 -48303524 - MER20 DNA MER1_type 0 219 34 715 133 0 0 chr3 179221101 179221199 -48303379 - AluSg SINE Alu -211 99 2 3828 215 60 73 chr3 179221204 179221339 -48303239 - L1MC3 LINE L1 -1087 5059 4924 1626 216 83 9 chr3 179221339 179221677 -48302901 + MLT1A1 LTR MaLR 1 363 -2 3828 215 60 73 chr3 179221677 179222652 -48301926 - L1MC3 LINE L1 -1222 4924 3967 2101 107 45 10 chr3 179222652 179222943 -48301635 - AluSq SINE Alu -12 301 1 3828 215 60 73 chr3 179222943 179223156 -48301422 - L1MC3 LINE L1 -2179 3967 3753 1734 231 54 82 chr3 179223262 179223764 -48300814 + L1MD3 LINE L1 6607 7093 -949 198 118 0 0 chr3 179223764 179223798 -48300780 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 1734 231 54 82 chr3 179223798 179224004 -48300574 + L1MD3 LINE L1 7093 7303 -739 24 0 0 0 chr3 179224033 179224057 -48300521 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr3 179224169 179224201 -48300377 + AT_rich Low_complexity Low_complexity 1 32 0 792 208 17 23 chr3 179224670 179224843 -48299735 - MIR SINE MIR -33 229 58 504 211 112 20 chr3 179224828 179225006 -48299572 - MIR SINE MIR -33 229 41 * 2100 110 0 7 chr3 179228795 179229110 -48295468 - AluSg SINE Alu 0 313 1 207 0 0 0 chr3 179229550 179229573 -48295005 + (TA)n Simple_repeat Simple_repeat 1 23 0 1821 148 10 10 chr3 179229573 179229878 -48294700 - AluJb SINE Alu -7 305 1 2571 205 34 37 chr3 179230160 179230676 -48293902 - L1MCc LINE L1 -4851 1194 806 2399 93 0 0 chr3 179230676 179230977 -48293601 - AluSg SINE Alu -5 305 5 2571 205 34 37 chr3 179230977 179231345 -48293233 - L1MCc LINE L1 -5239 806 438 279 266 38 0 chr3 179231430 179231509 -48293069 - L1MCc LINE L1 -5482 563 482 1482 150 25 0 chr3 179231525 179231765 -48292813 - Tigger7 DNA MER2_type 0 2487 2242 561 42 0 0 chr3 179231770 179231842 -48292736 + (CTATA)n Simple_repeat Simple_repeat 2 73 0 1182 264 79 42 chr3 179231895 179232353 -48292225 - L1MCc LINE L1 -5565 480 6 1525 166 139 47 chr3 179232357 179232543 -48292035 - LTR54B LTR ERV1 -4 494 327 1783 154 7 7 chr3 179232543 179232823 -48291755 + AluJo SINE Alu 15 294 -18 1525 166 139 47 chr3 179232823 179233088 -48291490 - LTR54B LTR ERV1 -171 327 1 896 301 69 26 chr3 179233119 179233133 -48291445 + L1MC4a LINE L1 5420 5432 -2376 1664 184 0 17 chr3 179233133 179233432 -48291146 + AluJo SINE Alu 1 294 -18 896 301 69 26 chr3 179233432 179233882 -48290696 + L1MC4a LINE L1 5432 5904 -1904 365 314 10 0 chr3 179234320 179234422 -48290156 + L2 LINE L2 3166 3268 -4 626 261 57 9 chr3 179234926 179235118 -48289460 - MIR SINE MIR -61 201 5 776 280 162 52 chr3 179235721 179236765 -48287813 + L2 LINE L2 2100 3255 -58 242 154 0 0 chr3 179236939 179236978 -48287600 + L2 LINE L2 3268 3306 -7 315 229 145 0 chr3 179238327 179238410 -48286168 - MIR3 SINE MIR -6 202 108 24 32 0 0 chr3 179239082 179239113 -48285465 + AT_rich Low_complexity Low_complexity 1 31 0 286 264 47 23 chr3 179239178 179239307 -48285271 + L1ME LINE L1 5687 5818 -303 193 159 32 16 chr3 179239698 179239761 -48284817 + (TTCA)n Simple_repeat Simple_repeat 3 66 0 1262 97 11 38 chr3 179240026 179240048 -48284530 + AluSg/x SINE Alu 116 137 -172 2375 79 0 0 chr3 179240048 179240339 -48284239 + AluY SINE Alu 3 293 -18 1262 97 11 38 chr3 179240339 179240501 -48284077 + AluSg/x SINE Alu 137 295 -14 1104 227 182 3 chr3 179240501 179241054 -48283524 - LTR50 LTR ERVL -49 746 1 285 294 0 46 chr3 179241092 179241201 -48283377 - L2 LINE L2 -300 2972 2869 263 233 47 12 chr3 179241976 179242062 -48282516 - L1M4 LINE L1 -1491 4655 4567 1585 276 107 103 chr3 179242063 179242465 -48282113 + L2 LINE L2 1836 2235 -1037 375 23 0 0 chr3 179242465 179242509 -48282069 + (CA)n Simple_repeat Simple_repeat 2 45 0 1585 276 107 103 chr3 179242509 179242604 -48281974 + L2 LINE L2 2235 2328 -944 675 174 0 0 chr3 179242604 179242702 -48281876 + FRAM SINE Alu 49 146 -30 1585 276 107 103 chr3 179242702 179242898 -48281680 + L2 LINE L2 2328 2522 -750 2188 100 0 10 chr3 179242898 179243198 -48281380 - AluY SINE Alu -14 297 1 1585 276 107 103 chr3 179243198 179243817 -48280761 + L2 LINE L2 2522 3271 -1 258 373 57 44 chr3 179245026 179245184 -48279394 - MIR3 SINE MIR -33 175 16 189 250 21 21 chr3 179246504 179246552 -48278026 + L2 LINE L2 3220 3267 -5 300 290 57 17 chr3 179247219 179247341 -48277237 + MIR SINE MIR 36 171 -61 453 336 95 36 chr3 179247730 179248173 -48276405 - MLT1K LTR MaLR -18 570 102 2378 79 0 0 chr3 179249010 179249315 -48275263 + AluY SINE Alu 1 305 -6 446 311 110 14 chr3 179249677 179249896 -48274682 - MIR SINE MIR -3 259 20 283 247 56 11 chr3 179250023 179250112 -48274466 + L2 LINE L2 3219 3311 -2 24 0 0 0 chr3 179250325 179250349 -48274229 + AT_rich Low_complexity Low_complexity 1 24 0 1290 154 70 14 chr3 179250461 179250746 -48273832 - MER33 DNA MER1_type -22 302 2 1905 88 0 8 chr3 179251128 179251402 -48273176 - AluSx SINE Alu 0 308 37 340 297 0 20 chr3 179251998 179252072 -48272506 + (CCA)n Simple_repeat Simple_repeat 1 74 -25 1295 192 112 13 chr3 179252072 179252384 -48272194 - MER2 DNA MER2_type -1 343 1 340 297 0 20 chr3 179252384 179252410 -48272168 + (CCA)n Simple_repeat Simple_repeat 74 99 0 317 212 45 0 chr3 179253006 179253072 -48271506 + MIR SINE MIR 82 150 -112 380 216 0 41 chr3 179253175 179253272 -48271306 - MIR SINE MIR -66 196 104 2879 98 32 20 chr3 179253573 179254012 -48270566 + MLT2A1 LTR ERVL 1 444 0 215 163 20 20 chr3 179255269 179255318 -48269260 - L3 LINE CR1 -3 1574 1526 267 272 105 44 chr3 179255517 179255599 -48268979 - Charlie8 DNA MER1_type -220 121 29 4320 147 33 47 chr3 179255599 179255744 -48268834 + LTR39 LTR ERV1 1 147 -636 2142 112 14 3 chr3 179255744 179256039 -48268539 + AluSx SINE Alu 3 300 -12 4320 147 33 47 chr3 179256039 179256687 -48267891 + LTR39 LTR ERV1 147 783 0 267 272 105 44 chr3 179256687 179256718 -48267860 - Charlie8 DNA MER1_type -312 29 1 207 260 41 27 chr3 179256733 179256806 -48267772 - MIR3 SINE MIR -53 155 82 1116 274 143 7 chr3 179257184 179257619 -48266959 - L2 LINE L2 -4 3309 2816 1470 144 103 15 chr3 179258942 179259205 -48265373 + AluJb SINE Alu 1 286 -26 410 227 92 115 chr3 179259440 179259535 -48265043 - HAL1b LINE L1 -18 1330 1234 2194 123 10 0 chr3 179259535 179259828 -48264750 + AluSc SINE Alu 3 298 -11 410 227 92 115 chr3 179259828 179260027 -48264551 - HAL1b LINE L1 -114 1234 1043 1002 140 0 0 chr3 179260304 179260461 -48264117 + Tigger6a DNA MER2_type 2 158 -925 219 239 43 0 chr3 179261251 179261343 -48263235 + (TA)n Simple_repeat Simple_repeat 1 96 0 9863 28 0 1 chr3 179261351 179262610 -48261968 - L1P LINE L1 -729 5426 4169 309 0 0 0 chr3 179262610 179262647 -48261931 + L1PA4 LINE L1 6112 6151 -4 825 335 80 23 chr3 179262735 179263210 -48261368 - L3 LINE CR1 -861 716 215 29 60 0 0 chr3 179264270 179264320 -48260258 + AT_rich Low_complexity Low_complexity 1 50 0 1675 169 29 11 chr3 179264438 179264717 -48259861 + AluJb SINE Alu 1 284 -28 213 65 0 0 chr3 179264717 179264748 -48259830 + (CATA)n Simple_repeat Simple_repeat 2 32 0 4553 190 54 32 chr3 179265061 179267267 -48257311 + L1MD1 LINE L1 3989 6242 0 209 133 0 44 chr3 179267679 179267724 -48256854 + (CA)n Simple_repeat Simple_repeat 2 44 0 1772 138 115 16 chr3 179269372 179269677 -48254901 - MER1B DNA MER1_type 0 337 3 294 213 33 0 chr3 179269882 179269943 -48254635 + L2 LINE L2 3251 3313 0 23 33 0 0 chr3 179270202 179270232 -48254346 + AT_rich Low_complexity Low_complexity 1 30 0 5777 131 65 12 chr3 179271243 179272241 -48252337 - Tigger2 DNA MER2_type -1 2717 1667 2000 139 21 0 chr3 179272235 179272567 -48252011 - Tigger2 DNA MER2_type -1221 1497 1159 * 544 162 28 92 chr3 179272561 179272703 -48251875 + LTR8A LTR ERV1 595 727 0 * 605 292 0 40 chr3 179272705 179272931 -48251647 + HUERS-P1 LTR ERV1 3 219 -6044 4145 174 53 53 chr3 179272982 179274300 -48250278 + HUERS-P1 LTR ERV1 355 1482 -4464 3243 197 49 82 chr3 179274334 179275372 -48249206 + HUERS-P1 LTR ERV1 1485 2857 -3195 2039 136 10 3 chr3 179275372 179275673 -48248905 + AluSx SINE Alu 1 303 -9 3243 197 49 82 chr3 179275673 179276207 -48248371 + HUERS-P1 LTR ERV1 2857 3407 -2645 242 229 16 0 chr3 179276209 179276270 -48248308 + MER34C LTR ERV1 169 230 -355 11098 173 37 64 chr3 179276305 179279598 -48244980 + LTR8A-int LTR ERV1 1833 6261 -2 1822 154 99 12 chr3 179279601 179279694 -48244884 + LTR8A LTR ERV1 1 85 -642 2463 108 37 6 chr3 179279694 179280047 -48244531 + THE1B LTR MaLR 1 364 0 1822 154 99 12 chr3 179280047 179280544 -48244034 + LTR8A LTR ERV1 85 674 -53 5693 146 32 49 chr3 179280594 179281770 -48242808 - Tigger2 DNA MER2_type -1562 1156 1 289 197 0 33 chr3 179281770 179281831 -48242747 + MIR SINE MIR 199 257 -5 1407 206 110 28 chr3 179283826 179284397 -48240181 - MER67C LTR ERV1 -14 696 38 201 174 65 0 chr3 179285814 179285860 -48238718 - L2 LINE L2 0 3313 3265 2387 64 0 29 chr3 179286239 179286551 -48238027 + AluY SINE Alu 1 303 -8 442 268 145 0 chr3 179287051 179287219 -48237359 - MER3 DNA MER1_type 0 209 12 1732 177 20 10 chr3 179287219 179287524 -48237054 + AluJo SINE Alu 1 308 -4 4047 159 18 33 chr3 179288293 179289289 -48235289 + pTR5 LTR ERV1 744 2062 -376 3477 153 76 29 chr3 179289435 179289770 -48234808 + Tigger6a DNA MER2_type 297 615 -982 2198 85 78 0 chr3 179289770 179290053 -48234525 + AluSx SINE Alu 1 305 -7 3477 153 76 29 chr3 179290053 179290468 -48234110 + Tigger6a DNA MER2_type 615 1082 -1 465 263 221 16 chr3 179290960 179291150 -48233428 - MIR SINE MIR -22 240 12 444 253 135 47 chr3 179292397 179292567 -48232011 - L2 LINE L2 0 3313 3129 798 241 79 97 chr3 179292570 179293088 -48231490 - MER34 LTR ERV1 0 542 34 1416 293 90 15 chr3 179293112 179293561 -48231017 - L2 LINE L2 -209 3104 2690 2775 85 3 3 chr3 179293561 179293925 -48230653 - THE1B LTR MaLR 0 364 1 1416 293 90 15 chr3 179293925 179294264 -48230314 - L2 LINE L2 -623 2690 2261 2074 123 3 10 chr3 179294340 179294632 -48229946 + AluSx SINE Alu 2 291 -21 529 278 105 0 chr3 179294816 179294949 -48229629 + MIR SINE MIR 26 172 -90 896 191 125 0 chr3 179295281 179295449 -48229129 - MER5A DNA MER1_type 0 189 1 1597 188 46 38 chr3 179296052 179296420 -48228158 - MLT1A2 LTR MaLR 0 374 4 365 234 13 0 chr3 179296654 179296731 -48227847 - MLT1I LTR MaLR -2 407 330 239 54 27 0 chr3 179298169 179298206 -48226372 + (TG)n Simple_repeat Simple_repeat 2 39 0 413 234 81 0 chr3 179298457 179298568 -48226010 + MER94 DNA DNA 14 133 -1 828 206 160 23 chr3 179298990 179299252 -48225326 + L1MC4a LINE L1 5586 5883 -1925 300 91 0 0 chr3 179299898 179299942 -48224636 + (TCC)n Simple_repeat Simple_repeat 3 46 0 754 234 24 6 chr3 179300041 179300208 -48224370 - MIR3 SINE MIR -6 202 33 275 227 36 64 chr3 179301740 179301874 -48222704 + L2 LINE L2 3142 3313 0 234 333 38 0 chr3 179301866 179301971 -48222607 + MIR3 SINE MIR 98 206 -2 * 223 254 17 0 chr3 179304083 179304142 -48220436 + (CGAG)n Simple_repeat Simple_repeat 1 60 0 25 0 0 0 chr3 179304308 179304333 -48220245 + AT_rich Low_complexity Low_complexity 1 25 0 325 354 146 0 chr3 179306486 179306650 -48217928 - MER91A DNA MER1_type -1 195 8 258 257 71 14 chr3 179307025 179307095 -48217483 + L2 LINE L2 3221 3294 -19 24 103 0 0 chr3 179307280 179307367 -48217211 + AT_rich Low_complexity Low_complexity 1 87 0 215 158 26 0 chr3 179307727 179307765 -48216813 - MIR SINE MIR -113 95 57 26 30 0 0 chr3 179307930 179307963 -48216615 + AT_rich Low_complexity Low_complexity 1 33 0 1616 169 17 0 chr3 179307968 179308258 -48216320 + AluJo SINE Alu 3 297 -15 2174 69 10 39 chr3 179308409 179308715 -48215863 + AluY SINE Alu 1 297 -14 25 31 0 0 chr3 179309891 179309923 -48214655 + GC_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 179310288 179310309 -48214269 + GC_rich Low_complexity Low_complexity 1 21 0 325 290 97 32 chr3 179312253 179312408 -48212170 - MLT1L LTR MaLR -330 285 121 1169 121 5 21 chr3 179313192 179313382 -48211196 - AluSg/x SINE Alu -6 306 120 194 238 0 0 chr3 179314316 179314358 -48210220 + MIR SINE MIR 218 259 -3 2300 100 0 0 chr3 179314598 179314897 -48209681 + AluSx SINE Alu 1 299 -13 5685 110 99 113 chr3 179314897 179316495 -48208083 - pTR5 LTR ERV1 0 2438 589 1703 177 20 10 chr3 179317263 179317568 -48207010 - AluJo SINE Alu -4 308 1 519 257 145 0 chr3 179317568 179317736 -48206842 + MER3 DNA MER1_type 12 209 0 2406 64 0 29 chr3 179318236 179318548 -48206030 - AluY SINE Alu -8 303 1 197 174 65 0 chr3 179318927 179318973 -48205605 + L2 LINE L2 3265 3313 0 1622 207 128 25 chr3 179320363 179320961 -48203617 + MER67C LTR ERV1 1 696 -14 287 197 0 33 chr3 179322972 179323033 -48201545 - MIR SINE MIR -5 257 199 6273 143 32 49 chr3 179323033 179324209 -48200369 + Tigger2 DNA MER2_type 1 1156 -1562 2003 154 99 12 chr3 179324259 179324756 -48199822 - LTR8A LTR ERV1 -53 674 85 2641 108 37 6 chr3 179324756 179325109 -48199469 - THE1B LTR MaLR 0 364 1 2003 154 99 12 chr3 179325109 179325202 -48199376 - LTR8A LTR ERV1 -642 85 1 12383 184 65 76 chr3 179325202 179329134 -48195444 - HUERS-P1 LTR ERV1 0 6263 2187 2088 133 10 3 chr3 179329134 179329443 -48195135 - AluSx SINE Alu -1 311 1 12383 184 65 76 chr3 179329443 179330481 -48194097 - HUERS-P1 LTR ERV1 -4076 2187 1139 4534 199 84 54 chr3 179330515 179331833 -48192745 - HUERS-P1 LTR ERV1 -4648 1615 355 674 294 0 40 chr3 179331884 179332112 -48192466 - HUERS-P1 LTR ERV1 -6044 219 1 602 162 28 92 chr3 179332112 179332254 -48192324 - LTR8A LTR ERV1 0 727 595 * 2164 139 21 0 chr3 179332248 179332580 -48191998 + Tigger2 DNA MER2_type 1159 1497 -1221 * 6271 131 65 12 chr3 179332574 179333572 -48191006 + Tigger2 DNA MER2_type 1667 2717 -1 23 33 0 0 chr3 179334583 179334613 -48189965 + AT_rich Low_complexity Low_complexity 1 30 0 275 229 33 0 chr3 179334872 179334933 -48189645 - L2 LINE L2 0 3313 3251 1901 138 115 16 chr3 179335138 179335443 -48189135 + MER1B DNA MER1_type 3 337 0 182 125 0 25 chr3 179337096 179337136 -48187442 + (TG)n Simple_repeat Simple_repeat 2 40 0 5026 190 53 32 chr3 179337548 179339755 -48184823 - L1MD1 LINE L1 0 6242 3989 213 65 0 0 chr3 179340068 179340099 -48184479 + (TATG)n Simple_repeat Simple_repeat 2 32 0 1665 169 29 11 chr3 179340099 179340378 -48184200 - AluJb SINE Alu -28 284 1 29 60 0 0 chr3 179340496 179340546 -48184032 + AT_rich Low_complexity Low_complexity 1 50 0 775 335 80 23 chr3 179341606 179342081 -48182497 + L3 LINE CR1 215 716 -861 332 0 0 0 chr3 179342169 179342209 -48182369 - L1PA4 LINE L1 -4 6151 6112 10532 28 0 1 chr3 179342209 179343465 -48181113 + L1P LINE L1 4172 5426 -729 219 239 43 0 chr3 179343473 179343565 -48181013 + (TA)n Simple_repeat Simple_repeat 1 96 0 830 322 90 65 chr3 179344178 179344812 -48179766 + L3 LINE CR1 904 1553 -24 21 36 0 0 chr3 179344887 179344915 -48179663 + AT_rich Low_complexity Low_complexity 1 28 0 375 269 128 54 chr3 179345325 179345474 -48179104 + MIR SINE MIR 3 162 -100 244 330 33 11 chr3 179345557 179345648 -48178930 - MIR3 SINE MIR -7 201 109 30 27 0 0 chr3 179346383 179346420 -48178158 + AT_rich Low_complexity Low_complexity 1 37 0 28 79 0 0 chr3 179346950 179347013 -48177565 + AT_rich Low_complexity Low_complexity 1 63 0 2153 123 0 10 chr3 179347410 179347719 -48176859 - AluSx SINE Alu -6 306 1 1847 146 3 44 chr3 179347805 179348126 -48176452 - AluJb SINE Alu -4 308 1 722 304 122 31 chr3 179348186 179348781 -48175797 - L1MC4a LINE L1 -233 6282 5661 21 0 0 0 chr3 179348870 179348891 -48175687 + AT_rich Low_complexity Low_complexity 1 21 0 283 278 14 0 chr3 179348925 179348997 -48175581 - MLT1K LTR MaLR -7 581 509 235 222 10 81 chr3 179348997 179349024 -48175554 - LTR67 LTR ERVL -7 550 459 343 215 25 13 chr3 179349275 179349354 -48175224 - MLT1K LTR MaLR -500 88 9 1172 287 94 45 chr3 179349367 179350558 -48174020 - L1MC4a LINE L1 -1114 5426 4178 782 224 20 25 chr3 179350750 179350951 -48173627 - MER46A DNA MER2_type 0 236 37 229 188 31 16 chr3 179351058 179351122 -48173456 - L1 LINE L1 -2393 4147 4083 321 280 90 35 chr3 179351307 179351507 -48173071 - L1 LINE L1 -2667 3873 3663 230 159 0 23 chr3 179351511 179351555 -48173023 + GA-rich Low_complexity Low_complexity 1 43 0 559 292 86 30 chr3 179351578 179351664 -48172914 - L1 LINE L1 -2909 3631 3551 2236 106 0 7 chr3 179351664 179351966 -48172612 + AluSx SINE Alu 1 300 -12 559 292 86 30 chr3 179351966 179352293 -48172285 - L1 LINE L1 -2989 3551 3178 1583 148 54 91 chr3 179352711 179353097 -48171481 - L1MC1 LINE L1 -6 6327 5956 1064 260 71 14 chr3 179353097 179353462 -48171116 - L1MC4a LINE L1 -6152 388 3 338 266 126 70 chr3 179354015 179354229 -48170349 - MLT1J LTR MaLR -52 459 234 25 31 0 0 chr3 179355599 179355631 -48168947 + AT_rich Low_complexity Low_complexity 1 32 0 378 234 78 78 chr3 179355637 179355804 -48168774 + MIR SINE MIR 8 174 -88 243 203 109 0 chr3 179356917 179356981 -48167597 - MIR SINE MIR -113 149 79 262 367 58 22 chr3 179357377 179357655 -48166923 + L2 LINE L2 891 1178 -2136 688 350 73 41 chr3 179357662 179358459 -48166119 + L2 LINE L2 1605 2426 -888 738 254 23 0 chr3 179358479 179358656 -48165922 + MIR SINE MIR 12 192 -70 192 382 118 17 chr3 179358769 179359065 -48165513 + L2 LINE L2 2522 2847 -467 388 294 139 41 chr3 179359149 179359394 -48165184 + L2 LINE L2 3000 3268 -4 433 308 88 52 chr3 179359516 179359902 -48164676 + MLT1J LTR MaLR 110 509 -2 411 174 0 0 chr3 179359975 179360061 -48164517 + (TGGA)n Simple_repeat Simple_repeat 3 88 0 390 290 19 0 chr3 179360510 179360617 -48163961 + MER94 DNA DNA 1 109 -25 270 57 0 0 chr3 179360694 179360729 -48163849 + MADE1 DNA Mariner 1 35 -45 198 354 61 30 chr3 179361029 179361128 -48163450 + L2 LINE L2 3169 3270 -2 7513 150 18 17 chr3 179361870 179364229 -48160349 - L1MA4A LINE L1 -64 6239 3868 6489 24 0 0 chr3 179364229 179364982 -48159596 - L1PA3 LINE L1 0 6155 5403 * 7415 220 31 26 chr3 179364980 179367390 -48157188 - L1M2 LINE L1 -2264 4584 2224 981 147 0 0 chr3 179367390 179367574 -48157004 - L1M2 LINE L1 -4856 1993 1810 11697 194 19 6 chr3 179367815 179368987 -48155591 - L1PB1 LINE L1 0 6867 5712 2415 81 7 0 chr3 179368987 179369294 -48155284 + AluY SINE Alu 1 309 -2 11697 194 19 6 chr3 179369294 179371033 -48153545 - L1PB1 LINE L1 -1155 5712 3898 2243 96 0 10 chr3 179371033 179371357 -48153221 - AluSg SINE Alu 0 310 1 11697 194 19 6 chr3 179371357 179371978 -48152600 - L1PB1 LINE L1 -2969 3898 3287 1736 146 113 30 chr3 179371978 179372314 -48152264 + THE1B LTR MaLR 1 364 0 11216 97 10 22 chr3 179372314 179373583 -48150995 + THE1B-int LTR MaLR 1 1249 -331 17419 31 0 0 chr3 179373583 179376438 -48148140 + L1PA3 LINE L1 3299 6154 -1 11216 97 10 22 chr3 179376438 179376767 -48147811 + THE1B-int LTR MaLR 1249 1580 0 2192 126 42 22 chr3 179376767 179377123 -48147455 + THE1B LTR MaLR 1 363 -1 14953 167 63 30 chr3 179377126 179380302 -48144276 - L1PB1 LINE L1 -3573 3289 3 1024 160 21 34 chr3 179380314 179380552 -48144026 - L1M2 LINE L1 -5021 1828 1594 638 273 29 34 chr3 179383199 179383408 -48141170 + MIR SINE MIR 38 245 -17 22 80 0 0 chr3 179383787 179383837 -48140741 + AT_rich Low_complexity Low_complexity 1 50 0 2312 69 0 39 chr3 179384134 179384439 -48140139 - AluSx SINE Alu -13 299 7 1950 174 92 3 chr3 179386695 179387052 -48137526 + MSTB LTR MaLR 1 389 -37 24 32 0 0 chr3 179387582 179387613 -48136965 + AT_rich Low_complexity Low_complexity 1 31 0 6053 87 23 27 chr3 179387784 179388610 -48135968 + L1PA10 LINE L1 4610 5436 -732 1947 145 13 3 chr3 179388610 179388913 -48135665 + AluJb SINE Alu 6 311 -1 6053 87 23 27 chr3 179388913 179389628 -48134950 + L1PA10 LINE L1 5436 6152 -16 1374 120 9 22 chr3 179389650 179389875 -48134703 + L1PA15 LINE L1 5319 5540 -625 1577 113 53 8 chr3 179389981 179390228 -48134350 + L1PA15 LINE L1 5907 6164 -1 1541 184 47 22 chr3 179390228 179390329 -48134249 + MLT1A1 LTR MaLR 34 131 -234 4958 108 16 46 chr3 179390329 179390692 -48133886 - MER4E LTR ERV1 0 779 407 2295 116 0 0 chr3 179390692 179390995 -48133583 + AluSx SINE Alu 1 303 -9 4958 108 16 46 chr3 179390995 179391434 -48133144 - MER4E LTR ERV1 -372 407 1 1541 184 47 22 chr3 179391434 179391653 -48132925 + MLT1A1 LTR MaLR 131 362 -3 1032 143 0 0 chr3 179392258 179392476 -48132102 + (TA)n Simple_repeat Simple_repeat 1 218 0 246 128 0 0 chr3 179392477 179392516 -48132062 + (CATA)n Simple_repeat Simple_repeat 4 42 0 355 289 0 0 chr3 179392517 179392607 -48131971 - L1MC4 LINE L1 -1339 6703 6614 337 303 0 0 chr3 179392555 179392644 -48131934 + L1MC4 LINE L1 6614 6702 -1340 * 251 216 0 0 chr3 179392669 179392720 -48131858 - MER4-int LTR ERV1 -5436 1162 1112 210 191 0 0 chr3 179392725 179392767 -48131811 + (TA)n Simple_repeat Simple_repeat 2 43 0 263 244 23 0 chr3 179392769 179392855 -48131723 - L1MC4 LINE L1 -1341 6701 6614 217 244 0 0 chr3 179392859 179392904 -48131674 + (TATG)n Simple_repeat Simple_repeat 3 47 0 585 287 138 24 chr3 179393075 179393364 -48131214 - MER102a DNA MER1_type -8 322 1 21 36 0 0 chr3 179393992 179394020 -48130558 + AT_rich Low_complexity Low_complexity 1 28 0 578 212 0 45 chr3 179394020 179394152 -48130426 - FLAM_C SINE Alu -17 126 1 2009 126 4 0 chr3 179394702 179395005 -48129573 - AluSg SINE Alu 0 304 1 26 30 0 0 chr3 179395475 179395508 -48129070 + AT_rich Low_complexity Low_complexity 1 33 0 23 68 0 0 chr3 179395851 179395895 -48128683 + AT_rich Low_complexity Low_complexity 1 44 0 * 423 248 131 67 chr3 179395891 179396343 -48128235 - L1ME4a LINE L1 -217 5904 5398 252 207 103 0 chr3 179396515 179396573 -48128005 - MLT1K LTR MaLR -2 586 523 1344 164 6 104 chr3 179397465 179397679 -48126899 - AluJo SINE Alu -10 302 131 180 0 0 0 chr3 179397679 179397699 -48126879 + (TA)n Simple_repeat Simple_repeat 2 21 0 1344 164 6 104 chr3 179397699 179397819 -48126759 - AluJo SINE Alu -181 131 1 200 310 42 14 chr3 179399411 179399482 -48125096 - MIR3 SINE MIR -135 73 1 353 230 72 129 chr3 179400142 179400559 -48124019 - L1ME4a LINE L1 -23 6098 5706 4649 225 44 14 chr3 179400673 179401798 -48122780 - L1MC4a LINE L1 -11 7797 6639 2251 128 3 50 chr3 179401904 179402286 -48122292 + THE1B LTR MaLR 1 364 0 311 198 38 9 chr3 179402290 179402396 -48122182 - L1M4 LINE L1 -3181 2965 2857 2165 91 0 17 chr3 179402401 179402698 -48121880 + AluY SINE Alu 11 302 -9 1520 176 62 0 chr3 179403172 179403445 -48121133 - L1PA16 LINE L1 -19 6147 5858 798 213 11 16 chr3 179403446 179403634 -48120944 + L1PA16 LINE L1 5968 6154 -12 3236 218 17 43 chr3 179403645 179404929 -48119649 - L1PA16 LINE L1 -295 5871 4629 273 122 61 0 chr3 179404948 179404997 -48119581 - L1ME4a LINE L1 -528 5593 5542 1083 158 6 0 chr3 179405047 179405224 -48119354 - L1PB3 LINE L1 0 6154 5977 1543 303 103 15 chr3 179405224 179406033 -48118545 - L1PBa LINE L1 -5981 882 3 1571 184 12 3 chr3 179406044 179406370 -48118208 - L1 LINE L1 -1502 4644 4316 244 263 103 78 chr3 179406798 179407084 -48117494 - L1MC5 LINE L1 -73 7888 7586 3488 55 2 0 chr3 179407084 179407520 -48117058 - L1PA7 LINE L1 -16 6138 5702 244 263 103 78 chr3 179407520 179407659 -48116919 - L1MC5 LINE L1 -375 7586 7452 6871 181 9 6 chr3 179407702 179409795 -48114783 - L1PA13 LINE L1 -13 6150 4018 2881 250 100 44 chr3 179409795 179411126 -48113452 + HAL1 LINE L1 812 2217 -290 543 324 150 14 chr3 179411220 179411581 -48112997 + MLT1J LTR MaLR 100 509 -2 492 247 71 12 chr3 179411585 179411755 -48112823 + HAL1 LINE L1 2276 2455 -52 878 211 47 5 chr3 179411759 179411949 -48112629 + MSTB1 LTR MaLR 1 198 -259 1094 193 37 33 chr3 179412868 179413112 -48111466 + MSTB1 LTR MaLR 188 432 0 21 36 0 0 chr3 179413148 179413176 -48111402 + AT_rich Low_complexity Low_complexity 1 28 0 222 234 0 0 chr3 179414389 179414436 -48110142 + L2 LINE L2 3263 3309 -4 3812 190 55 29 chr3 179416038 179416636 -48107942 - L1MB7 LINE L1 0 6184 5603 2341 85 0 0 chr3 179416636 179416931 -48107647 - AluY SINE Alu -16 295 1 3812 190 55 29 chr3 179416931 179418088 -48106490 - L1MB7 LINE L1 -581 5603 4383 443 214 34 11 chr3 179418416 179418505 -48106073 + MER69 DNA AcHobo 2 92 -2434 29 0 0 0 chr3 179418576 179418605 -48105973 + AT_rich Low_complexity Low_complexity 1 29 0 382 252 36 20 chr3 179418622 179418777 -48105801 + MER69 DNA AcHobo 214 1551 -975 1164 235 129 8 chr3 179418820 179419216 -48105362 + MER69 DNA AcHobo 1657 2100 -426 296 351 50 20 chr3 179419278 179419480 -48105098 + L2 LINE L2 1959 2166 -1148 506 355 26 0 chr3 179419505 179419657 -48104921 - L2 LINE L2 0 3272 3117 411 305 23 0 chr3 179420062 179420193 -48104385 - MER94 DNA DNA 0 134 1 225 264 0 0 chr3 179420561 179420614 -48103964 + L3 LINE CR1 1523 1575 -2 1810 256 120 58 chr3 179420708 179420859 -48103719 + L1ME2 LINE L1 142 282 -5923 2457 160 34 0 chr3 179420859 179421302 -48103276 + L1MC1 LINE L1 5870 6327 -6 1810 256 120 58 chr3 179421302 179422002 -48102576 + L1ME2 LINE L1 282 1046 -5159 25 0 0 0 chr3 179422023 179422048 -48102530 + AT_rich Low_complexity Low_complexity 1 25 0 452 219 39 8 chr3 179422977 179423105 -48101473 + L1ME2 LINE L1 1033 1164 -5054 * 710 295 60 17 chr3 179423081 179423495 -48101083 + L1ME2 LINE L1 1732 2163 -4233 2051 253 46 9 chr3 179423518 179424150 -48100428 + L1ME2 LINE L1 4821 5481 -743 2012 242 64 33 chr3 179424154 179424823 -48099755 + L1ME2 LINE L1 5534 6223 -10 23 54 0 0 chr3 179425188 179425225 -48099353 + AT_rich Low_complexity Low_complexity 1 37 0 1807 151 53 0 chr3 179425275 179425560 -48099018 + AluSx SINE Alu 1 300 -12 2152 86 0 0 chr3 179425585 179425893 -48098685 + AluY SINE Alu 1 308 0 234 267 0 33 chr3 179425959 179426019 -48098559 + LTR16C LTR ERVL 69 126 -365 1182 213 16 4 chr3 179426097 179426341 -48098237 - L1ME LINE L1 -463 5701 5455 687 257 107 51 chr3 179426355 179426767 -48097811 - Charlie7 DNA MER1_type -1991 621 187 845 279 65 50 chr3 179426830 179427167 -48097411 + L2 LINE L2 2971 3312 -1 439 243 0 59 chr3 179427514 179427666 -48096912 - L1ME4a LINE L1 -40 6081 5939 542 242 66 38 chr3 179427714 179427925 -48096653 - L1ME4a LINE L1 -316 5805 5589 358 159 0 0 chr3 179428542 179428605 -48095973 + Charlie5 DNA MER1_type 1 63 -2549 589 134 63 28 chr3 179428613 179428755 -48095823 + Charlie5 DNA MER1_type 2433 2579 -33 251 213 340 0 chr3 179429170 179429264 -48095314 + MIR SINE MIR 19 144 -118 360 0 0 0 chr3 179429265 179429305 -48095273 + (CA)n Simple_repeat Simple_repeat 2 41 0 4541 218 52 19 chr3 179429489 179429834 -48094744 + L1MD2 LINE L1 4814 5146 -1213 884 209 12 0 chr3 179429834 179430039 -48094539 + FAM SINE Alu 1 71 0 4541 218 52 19 chr3 179430039 179430980 -48093598 + L1MD2 LINE L1 5146 6155 -204 189 0 0 0 chr3 179430980 179431001 -48093577 + (CA)n Simple_repeat Simple_repeat 2 22 0 4541 218 52 19 chr3 179431001 179431201 -48093377 + L1MD2 LINE L1 6155 6347 -12 2148 115 20 0 chr3 179431206 179431511 -48093067 - AluSx SINE Alu -1 311 1 1798 134 71 91 chr3 179431919 179432315 -48092263 + MLT1B LTR MaLR 1 388 -2 250 339 65 83 chr3 179432967 179433292 -48091286 - L2 LINE L2 -1 3271 2953 376 322 85 15 chr3 179436243 179436442 -48088136 - MIR SINE MIR -44 218 6 31 58 0 0 chr3 179436694 179436746 -48087832 + AT_rich Low_complexity Low_complexity 1 52 0 8641 140 11 18 chr3 179437106 179439616 -48084962 - L1MA3 LINE L1 0 6305 3814 2014 168 52 48 chr3 179439618 179440135 -48084443 - L1MA3 LINE L1 -2674 3472 2954 554 136 0 11 chr3 179440258 179440346 -48084232 - Tigger5 DNA MER2_type 0 2323 2237 418 226 12 0 chr3 179440357 179440441 -48084137 + Tigger5 DNA MER2_type 1 85 -2238 314 229 0 0 chr3 179440466 179440527 -48084051 - Tigger5 DNA MER2_type -5 2318 2258 280 140 100 0 chr3 179440503 179440553 -48084025 - Tigger5 DNA MER2_type -2268 55 1 * 544 316 66 66 chr3 179440788 179441260 -48083318 - L1 LINE L1 -1436 4710 4239 3305 132 20 5 chr3 179441398 179442394 -48082184 - L1P4 LINE L1 -394 5767 4762 538 267 25 0 chr3 179442397 179442517 -48082061 + MIR SINE MIR 63 185 -77 740 302 85 16 chr3 179442618 179443065 -48081513 - L1 LINE L1 -2386 3760 3283 * 8500 184 16 4 chr3 179443060 179443436 -48081142 - L1P4 LINE L1 -1375 4771 4401 222 91 0 0 chr3 179443436 179443469 -48081109 + (TG)n Simple_repeat Simple_repeat 2 34 0 8500 184 16 4 chr3 179443469 179444755 -48079823 - L1P4 LINE L1 -1745 4401 3089 1038 283 76 52 chr3 179445336 179445890 -48078688 + L1MC4a LINE L1 5407 5973 -1835 785 177 44 11 chr3 179446001 179446182 -48078396 - L1MC2 LINE L1 -2 6342 6156 * 9935 147 19 3 chr3 179446180 179448652 -48075926 - L1PA11 LINE L1 -2 6172 3679 234 0 0 0 chr3 179448652 179448678 -48075900 + (TTG)n Simple_repeat Simple_repeat 2 27 0 9935 147 19 3 chr3 179448678 179448715 -48075863 - L1PA11 LINE L1 -2495 3679 3644 385 248 91 8 chr3 179448863 179448984 -48075594 - LTR67 LTR ERVL -17 540 410 238 262 119 36 chr3 179449910 179450162 -48074416 + L1ME LINE L1 5643 5915 -206 23 0 0 0 chr3 179450601 179450624 -48073954 + AT_rich Low_complexity Low_complexity 1 23 0 420 238 48 24 chr3 179450626 179450752 -48073826 - FRAM SINE Alu -4 172 44 193 292 0 0 chr3 179451499 179451547 -48073031 - L2 LINE L2 -1 3312 3265 248 360 45 0 chr3 179452762 179452873 -48071705 + MIR3 SINE MIR 86 201 -7 2320 93 0 0 chr3 179453021 179453312 -48071266 - AluSx SINE Alu -21 291 1 1804 199 17 0 chr3 179453980 179454341 -48070237 - L1MB7 LINE L1 -1 6183 5817 294 242 70 66 chr3 179454390 179454549 -48070029 + MIR SINE MIR 9 166 -63 503 316 13 13 chr3 179456423 179456578 -48068000 - MIR SINE MIR -80 182 28 411 240 89 0 chr3 179457043 179457189 -48067389 - L1MB7 LINE L1 -315 5806 5648 185 235 136 37 chr3 179457867 179457948 -48066630 - MIR SINE MIR -92 170 82 235 162 0 54 chr3 179458790 179458864 -48065714 + (TAAA)n Simple_repeat Simple_repeat 1 70 0 33460 52 3 1 chr3 179458869 179463047 -48061531 + L1PA4 LINE L1 1 4188 -1958 1628 25 0 0 chr3 179463045 179463245 -48061333 - L1P LINE L1 -982 5164 4965 * 10087 35 0 2 chr3 179463245 179465233 -48059345 + L1PA4 LINE L1 4165 6155 0 282 244 8 24 chr3 179465418 179465545 -48059033 + A-rich Low_complexity Low_complexity 3 127 0 275 245 319 0 chr3 179465900 179465994 -48058584 - L2 LINE L2 0 3313 3190 298 269 0 26 chr3 179466006 179466084 -48058494 + MIR SINE MIR 186 261 -1 738 275 206 18 chr3 179466092 179466427 -48058151 - L2 LINE L2 -1078 2236 1839 587 334 44 46 chr3 179466427 179467059 -48057519 + L1ME3A LINE L1 5322 5952 -218 344 251 98 60 chr3 179467120 179467335 -48057243 + L2 LINE L2 1641 1863 -1451 206 241 86 0 chr3 179467650 179467708 -48056870 - L2 LINE L2 -1716 1598 1536 455 248 216 40 chr3 179467724 179467946 -48056632 - MIR SINE MIR -1 261 1 35 24 0 0 chr3 179469213 179469255 -48055323 + AT_rich Low_complexity Low_complexity 1 42 0 250 245 104 57 chr3 179469476 179469582 -48054996 + MIR SINE MIR 20 130 -78 235 341 32 40 chr3 179470696 179470822 -48053756 - L2 LINE L2 -20 3252 3128 455 301 38 0 chr3 179471004 179471137 -48053441 + L2 LINE L2 2209 2346 -968 452 311 107 28 chr3 179471143 179471432 -48053146 - MLT1I LTR MaLR -52 357 46 192 77 0 0 chr3 179471730 179471756 -48052822 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 2277 39 11 11 chr3 179471763 179472045 -48052533 - AluY SINE Alu -25 286 5 243 257 0 27 chr3 179472062 179472136 -48052442 - L1MB8 LINE L1 -173 6005 5934 1508 203 12 3 chr3 179472192 179472522 -48052056 - L1ME1 LINE L1 -250 5916 5584 2063 148 48 16 chr3 179473681 179474058 -48050520 + MLT1B LTR MaLR 1 389 -1 2112 133 41 0 chr3 179474255 179474623 -48049955 + L1P5 LINE L1 5308 5690 -466 405 0 0 0 chr3 179474628 179474673 -48049905 + (TA)n Simple_repeat Simple_repeat 2 46 0 183 42 0 0 chr3 179475889 179475913 -48048665 + (TG)n Simple_repeat Simple_repeat 2 25 0 406 292 37 12 chr3 179477544 179477705 -48046873 - MIR3 SINE MIR -5 203 39 533 266 75 37 chr3 179477838 179478052 -48046526 + MIR SINE MIR 34 255 -7 1377 193 34 76 chr3 179478462 179478898 -48045680 + L1M4 LINE L1 2453 2870 -3276 361 303 36 48 chr3 179479009 179479174 -48045404 + MIR SINE MIR 47 209 -53 360 0 0 0 chr3 179480596 179480636 -48043942 + (TTA)n Simple_repeat Simple_repeat 3 42 0 7492 29 0 0 chr3 179480636 179481828 -48042750 - L1PA3 LINE L1 -18 6137 4946 32 75 0 0 chr3 179482204 179482271 -48042307 + AT_rich Low_complexity Low_complexity 1 67 0 633 322 134 30 chr3 179482335 179482405 -48042173 - L2 LINE L2 -426 2888 2827 468 309 84 6 chr3 179482405 179482583 -48041995 + MER91A DNA MER1_type 5 196 0 633 322 134 30 chr3 179482583 179483080 -48041498 - L2 LINE L2 -487 2827 2262 466 309 18 18 chr3 179483649 179483817 -48040761 + L3 LINE CR1 1288 1455 -122 291 238 196 42 chr3 179483920 179484063 -48040515 - MIR SINE MIR -51 211 47 262 135 122 54 chr3 179484106 179484180 -48040398 + MIR3 SINE MIR 125 203 -5 1681 192 131 16 chr3 179484199 179484574 -48040004 - MER47B DNA MER2_type 0 418 1 25 31 0 0 chr3 179484972 179485004 -48039574 + AT_rich Low_complexity Low_complexity 1 32 0 831 227 81 73 chr3 179485689 179485755 -48038823 + MER45C DNA AcHobo 53 117 -836 1491 184 6 81 chr3 179485755 179486076 -48038502 + AluJo SINE Alu 3 299 -13 831 227 81 73 chr3 179486076 179486282 -48038296 + MER45C DNA AcHobo 117 327 -626 286 170 0 160 chr3 179486339 179486433 -48038145 - Charlie8 DNA MER1_type -2254 163 85 21 0 0 0 chr3 179486582 179486603 -48037975 + AT_rich Low_complexity Low_complexity 1 21 0 576 169 65 40 chr3 179487004 179487128 -48037450 - MER3 DNA MER1_type 0 209 83 446 147 74 21 chr3 179487144 179487239 -48037339 - MER63 DNA MER1_type -329 733 8 494 186 70 0 chr3 179487241 179487327 -48037251 - MER3 DNA MER1_type -117 92 1 1737 152 7 27 chr3 179487543 179487840 -48036738 + AluJo SINE Alu 1 291 -21 386 264 132 0 chr3 179489353 179489474 -48035104 - MIR SINE MIR -76 186 50 2485 135 74 3 chr3 179489968 179490360 -48034218 - MSTB LTR MaLR 0 426 7 281 239 0 98 chr3 179490367 179490459 -48034119 - L2 LINE L2 -27 3245 3163 1394 181 82 44 chr3 179490579 179490894 -48033684 - MLT1F1 LTR MaLR 0 567 241 288 111 0 0 chr3 179491984 179492029 -48032549 + (GA)n Simple_repeat Simple_repeat 1 45 0 518 255 41 107 chr3 179492363 179492681 -48031897 + HAL1 LINE L1 3 299 -2208 14611 115 24 61 chr3 179492682 179494729 -48029849 + Tigger1 DNA MER2_type 1 2060 -358 814 103 0 17 chr3 179494729 179494845 -48029733 - AluSg/x SINE Alu -5 305 192 14611 115 24 61 chr3 179494845 179495191 -48029387 + Tigger1 DNA MER2_type 2060 2417 -1 1272 268 114 53 chr3 179495194 179495542 -48029036 + HAL1 LINE L1 301 626 -1881 1999 138 10 0 chr3 179495542 179495838 -48028740 + AluSx SINE Alu 1 299 -13 1272 268 114 53 chr3 179495838 179496337 -48028241 + HAL1 LINE L1 626 1200 -1307 * 2460 247 70 39 chr3 179496333 179497281 -48027297 + HAL1 LINE L1 1531 2507 0 1535 279 100 8 chr3 179497790 179498393 -48026185 - L2 LINE L2 -598 2716 1991 833 208 174 20 chr3 179498409 179498702 -48025876 - MER46C DNA MER2_type 0 338 1 1401 160 9 0 chr3 179499040 179499259 -48025319 + AluJo SINE Alu 1 221 -91 360 177 0 16 chr3 179499363 179499425 -48025153 - MER3 DNA MER1_type -107 102 42 255 331 7 0 chr3 179499707 179499846 -48024732 - L1M4 LINE L1 -3567 2579 2440 831 227 49 66 chr3 179499880 179500246 -48024332 - L1M4 LINE L1 -2685 3461 3102 191 372 112 23 chr3 179500289 179500547 -48024031 - L2 LINE L2 -787 2527 2247 253 167 0 17 chr3 179502020 179502080 -48022498 + L1ME4a LINE L1 6052 6110 -11 24 32 0 0 chr3 179502080 179502111 -48022467 + AT_rich Low_complexity Low_complexity 1 31 0 366 286 21 21 chr3 179503009 179503149 -48021429 + L1ME LINE L1 5497 5636 -485 22 35 0 0 chr3 179504577 179504606 -48019972 + AT_rich Low_complexity Low_complexity 1 29 0 24 0 0 0 chr3 179504645 179504669 -48019909 + AT_rich Low_complexity Low_complexity 1 24 0 243 299 35 11 chr3 179504802 179504889 -48019689 - MIR SINE MIR -109 153 65 5988 256 72 24 chr3 179504924 179507061 -48017517 + L1MEc LINE L1 37 2275 -4121 853 201 0 13 chr3 179507061 179507210 -48017368 - MER58B DNA MER1_type 0 341 195 359 261 0 0 chr3 179507243 179507335 -48017243 + L1MEc LINE L1 2266 2357 -4039 692 202 65 24 chr3 179507336 179507504 -48017074 + 7SK RNA RNA 1 175 -18 414 94 0 47 chr3 179507516 179507580 -48016998 + 7SK RNA RNA 133 193 0 2228 71 0 37 chr3 179507650 179507945 -48016633 + AluY SINE Alu 1 284 -27 208 147 0 0 chr3 179509261 179509295 -48015283 + (TAAAAA)n Simple_repeat Simple_repeat 1 34 0 304 326 37 56 chr3 179509599 179509869 -48014709 + L2 LINE L2 2625 2889 -425 2698 120 31 2 chr3 179511187 179511603 -48012975 + MSTA LTR MaLR 1 428 0 319 264 64 24 chr3 179512703 179512828 -48011750 - L3 LINE CR1 -2 1575 1446 462 328 40 17 chr3 179513287 179513461 -48011117 + MIR3 SINE MIR 3 180 -28 516 220 101 19 chr3 179515518 179515677 -48008901 - MIR3 SINE MIR -4 204 33 1542 165 66 18 chr3 179515894 179516167 -48008411 + AluJo SINE Alu 1 286 -26 22 35 0 0 chr3 179517761 179517790 -48006788 + AT_rich Low_complexity Low_complexity 1 29 0 196 175 150 0 chr3 179517996 179518036 -48006542 - MIR SINE MIR -131 131 86 25 31 0 0 chr3 179518094 179518126 -48006452 + AT_rich Low_complexity Low_complexity 1 32 0 182 407 25 0 chr3 179518373 179518454 -48006124 - L2 LINE L2 -198 3074 2992 360 365 44 24 chr3 179518594 179518843 -48005735 - L2 LINE L2 -556 2758 2505 183 293 61 12 chr3 179519275 179519357 -48005221 - MIR3 SINE MIR -7 201 116 * 287 303 84 35 chr3 179519310 179519452 -48005126 + MER5A DNA MER1_type 41 189 0 467 209 20 47 chr3 179520996 179521144 -48003434 - Charlie2 DNA MER1_type -32 2830 2687 300 188 62 0 chr3 179521218 179521298 -48003280 - Charlie2 DNA MER1_type -545 2317 2233 1362 255 72 73 chr3 179521305 179522026 -48002552 - Charlie2a DNA MER1_type -1773 1089 370 654 110 153 25 chr3 179523719 179523837 -48000741 + FLAM_C SINE Alu 1 133 0 2105 112 24 0 chr3 179523903 179524198 -48000380 + AluSx SINE Alu 1 302 -10 486 306 59 0 chr3 179524531 179524701 -47999877 - MIR SINE MIR -26 236 57 210 319 8 17 chr3 179525493 179525612 -47998966 + CT-rich Low_complexity Low_complexity 1 118 0 419 318 82 39 chr3 179525943 179526176 -47998402 - L1MEd LINE L1 -5163 956 714 475 313 83 26 chr3 179526239 179526469 -47998109 - L1MEd LINE L1 -5424 695 453 1221 184 126 13 chr3 179526475 179526784 -47997794 - MER2 DNA MER2_type 0 344 1 273 330 92 0 chr3 179528157 179528266 -47996312 - MIR3 SINE MIR -43 165 47 329 264 118 61 chr3 179528569 179528781 -47995797 - L1M4 LINE L1 -3792 2354 2131 30 45 0 0 chr3 179528884 179528928 -47995650 + AT_rich Low_complexity Low_complexity 1 44 0 762 301 88 22 chr3 179529682 179530047 -47994531 - MARNA DNA Mariner -155 431 43 1833 155 11 0 chr3 179530300 179530597 -47993981 + AluSx SINE Alu 4 303 0 277 163 213 12 chr3 179530696 179530776 -47993802 + L2 LINE L2 3218 3313 0 377 283 198 50 chr3 179530814 179531342 -47993236 - L2 LINE L2 -14 3299 2652 2208 122 0 0 chr3 179531533 179531828 -47992750 + AluSq SINE Alu 4 298 -15 299 247 27 0 chr3 179532192 179532265 -47992313 - MER5A DNA MER1_type -48 141 67 2654 71 13 26 chr3 179533621 179534001 -47990577 + THE1C LTR MaLR 1 375 0 189 171 0 0 chr3 179534136 179534171 -47990407 + C-rich Low_complexity Low_complexity 2 36 0 268 331 70 42 chr3 179534559 179534701 -47989877 - MIR SINE MIR -96 166 21 235 311 197 8 chr3 179535169 179535291 -47989287 + MIR SINE MIR 20 164 -98 2190 122 13 39 chr3 179535525 179535910 -47988668 + THE1C LTR MaLR 1 375 0 23 33 0 0 chr3 179536299 179536329 -47988249 + AT_rich Low_complexity Low_complexity 1 30 0 298 309 111 38 chr3 179536441 179536660 -47987918 + MIR SINE MIR 12 246 -16 2020 170 189 0 chr3 179538096 179538519 -47986059 - MLT1D LTR MaLR 0 505 3 5152 226 54 24 chr3 179538520 179540441 -47984137 + L1ME LINE L1 2026 3957 -2258 823 188 41 24 chr3 179540420 179540747 -47983831 + L1ME LINE L1 5189 5523 -716 * 2766 7 0 0 chr3 179540747 179541043 -47983535 - AluYb8 SINE Alu -13 305 10 1290 168 0 5 chr3 179543530 179543732 -47980846 + AluJb SINE Alu 86 286 -26 2090 161 12 0 chr3 179544630 179544971 -47979607 + MER7A DNA MER2_type 4 346 0 679 301 69 40 chr3 179545893 179546268 -47978310 - MLT1L LTR MaLR -99 516 131 483 18 0 0 chr3 179546570 179546626 -47977952 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 240 256 24 49 chr3 179547066 179547148 -47977430 - MER5A DNA MER1_type -1 188 109 358 245 14 72 chr3 179547162 179547301 -47977277 - MER5A DNA MER1_type -56 133 3 2337 93 0 13 chr3 179548109 179548410 -47976168 + AluSx SINE Alu 1 297 -15 280 294 59 17 chr3 179548586 179548705 -47975873 + L2 LINE L2 1945 2068 -1246 374 296 48 21 chr3 179548915 179549101 -47975477 - L2 LINE L2 -167 3146 2956 2601 164 72 4 chr3 179549157 179549267 -47975311 + MLT1D LTR MaLR 1 102 -403 1816 144 19 45 chr3 179549267 179549579 -47974999 + AluSx SINE Alu 1 304 -8 2601 164 72 4 chr3 179549579 179549937 -47974641 + MLT1D LTR MaLR 102 501 -4 476 316 124 4 chr3 179549964 179550230 -47974348 - L2 LINE L2 -527 2787 2490 575 243 7 33 chr3 179550314 179550466 -47974112 + MIR SINE MIR 2 149 -113 290 240 39 54 chr3 179550533 179550662 -47973916 - L2 LINE L2 -899 2415 2289 585 0 0 0 chr3 179550737 179550802 -47973776 + (TATTG)n Simple_repeat Simple_repeat 1 65 0 2207 96 7 3 chr3 179552546 179552838 -47971740 - AluSg SINE Alu -17 293 1 381 225 132 28 chr3 179552838 179553020 -47971558 - L1ME4a LINE L1 -211 5910 5710 358 301 23 15 chr3 179553098 179553231 -47971347 - L1ME4a LINE L1 -510 5611 5478 2887 246 65 57 chr3 179553356 179554637 -47969941 - L1MC4 LINE L1 -1 8041 6750 497 179 8 32 chr3 179554637 179554760 -47969818 + L1MA10 LINE L1 6215 6334 0 343 247 27 101 chr3 179554880 179555099 -47969479 + L1ME3A LINE L1 5968 6170 0 23 0 0 0 chr3 179555278 179555301 -47969277 + AT_rich Low_complexity Low_complexity 1 23 0 2247 258 62 27 chr3 179555352 179556120 -47968458 - L1ME LINE L1 -5196 874 80 28 0 0 0 chr3 179556452 179556480 -47968098 + AT_rich Low_complexity Low_complexity 1 28 0 27 0 0 0 chr3 179556648 179556675 -47967903 + AT_rich Low_complexity Low_complexity 1 27 0 536 360 84 18 chr3 179557169 179557885 -47966693 - L2 LINE L2 -831 2483 1721 314 240 194 16 chr3 179558311 179558440 -47966138 - MLT1K LTR MaLR -2 586 435 477 221 221 0 chr3 179559904 179560031 -47964547 - MLT1K LTR MaLR -294 294 140 22 0 0 0 chr3 179560314 179560336 -47964242 + AT_rich Low_complexity Low_complexity 1 22 0 1054 138 38 0 chr3 179560509 179560669 -47963909 + FRAM SINE Alu 4 169 -7 273 344 0 0 chr3 179561152 179561245 -47963333 - L2 LINE L2 0 3272 3180 2058 128 0 3 chr3 179562527 179562809 -47961769 - AluSg SINE Alu -29 281 1 355 259 46 0 chr3 179563107 179563215 -47961363 + MIR SINE MIR 35 147 -115 2395 193 37 57 chr3 179563805 179564370 -47960208 - MLT2B3 LTR ERVL 0 554 1 307 314 58 0 chr3 179564714 179564848 -47959730 - MIR SINE MIR -58 150 42 231 227 0 15 chr3 179564866 179564932 -47959646 + A-rich Low_complexity Low_complexity 3 67 0 506 283 58 15 chr3 179565437 179565642 -47958936 - MIR SINE MIR -19 243 30 238 230 133 18 chr3 179567235 179567348 -47957230 - MER5A DNA MER1_type -63 126 1 2337 133 31 33 chr3 179567421 179567812 -47956766 + MLT1B LTR MaLR 1 390 0 351 253 21 0 chr3 179568064 179568159 -47956419 - MIR SINE MIR -11 251 155 585 211 80 146 chr3 179568168 179568504 -47956074 - MER46C DNA MER2_type -5 333 20 418 267 10 0 chr3 179568509 179568610 -47955968 - MIR SINE MIR -111 151 50 2542 149 56 20 chr3 179568655 179569104 -47955474 + MLT1C LTR MaLR 3 467 0 3443 73 0 5 chr3 179569345 179569786 -47954792 + L1PA8 LINE L1 5732 6170 -2 1316 196 9 92 chr3 179569807 179570143 -47954435 + AluJo SINE Alu 1 308 -4 241 149 0 21 chr3 179571173 179571220 -47953358 + L2 LINE L2 3264 3309 -4 193 330 39 0 chr3 179571939 179572042 -47952536 - MIR3 SINE MIR -87 121 15 288 197 82 49 chr3 179574070 179574192 -47950386 - L1ME4a LINE L1 -13 6108 5983 207 0 0 0 chr3 179575014 179575037 -47949541 + (TTTTG)n Simple_repeat Simple_repeat 2 24 0 305 118 15 73 chr3 179575163 179575231 -47949347 - L2 LINE L2 -1 3271 3208 255 223 68 87 chr3 179575239 179575342 -47949236 - MIR SINE MIR -104 158 58 326 282 14 63 chr3 179575762 179575904 -47948674 + MIR SINE MIR 17 151 -111 209 81 0 27 chr3 179577081 179577118 -47947460 + (TTTTC)n Simple_repeat Simple_repeat 3 38 0 2365 95 0 9 chr3 179577121 179577437 -47947141 - AluSq SINE Alu 0 313 1 280 335 29 18 chr3 179578041 179578211 -47946367 + L1ME LINE L1 5632 5803 -318 254 220 120 40 chr3 179578497 179578597 -47945981 - MLT1E3 LTR MaLR -36 588 481 * 524 218 72 81 chr3 179578586 179578826 -47945752 - MLT1H LTR MaLR -270 279 1 260 188 69 69 chr3 179578831 179578932 -47945646 + L1MC4a LINE L1 6074 6174 -1634 252 202 0 160 chr3 179578955 179579074 -47945504 + L1MC5 LINE L1 7758 7857 -104 22 0 0 0 chr3 179579131 179579153 -47945425 + AT_rich Low_complexity Low_complexity 1 22 0 243 87 0 43 chr3 179580080 179580126 -47944452 + L1MC5 LINE L1 7641 7684 -277 481 261 8 8 chr3 179580136 179580270 -47944308 - L1ME3A LINE L1 -2 6168 6035 397 215 89 22 chr3 179580295 179580430 -47944148 + L1MC5 LINE L1 7708 7851 -110 275 296 76 38 chr3 179580687 179580819 -47943759 + L2 LINE L2 3136 3272 0 621 282 18 0 chr3 179580967 179581130 -47943448 - MIR3 SINE MIR -9 199 34 507 275 57 5 chr3 179582415 179582608 -47941970 - MIR3 SINE MIR -4 204 2 238 347 50 0 chr3 179583663 179583784 -47940794 - MIR SINE MIR -63 145 19 423 306 148 9 chr3 179584313 179584529 -47940049 - MIR SINE MIR -8 254 9 469 270 22 60 chr3 179584529 179584714 -47939864 + MER5B DNA MER1_type 1 178 0 1996 117 6 22 chr3 179584979 179585330 -47939248 - MER4A LTR ERV1 0 664 261 573 122 56 0 chr3 179585330 179585420 -47939158 - MER4A LTR ERV1 -566 98 4 270 0 0 0 chr3 179585420 179585450 -47939128 + (TA)n Simple_repeat Simple_repeat 2 31 0 507 269 63 55 chr3 179585608 179586006 -47938572 + L1ME4a LINE L1 5591 5991 -130 2238 169 78 18 chr3 179586223 179586660 -47937918 + MER101 LTR ERV1 12 474 0 22 0 0 0 chr3 179587392 179587414 -47937164 + GC_rich Low_complexity Low_complexity 1 22 0 213 287 78 23 chr3 179589444 179589573 -47935005 - MIR SINE MIR -36 226 91 238 88 0 0 chr3 179589586 179589620 -47934958 - MSTD LTR MaLR 0 396 363 396 0 0 0 chr3 179589726 179589770 -47934808 + (CA)n Simple_repeat Simple_repeat 2 45 0 1833 161 49 11 chr3 179589770 179590118 -47934460 + L1PB4 LINE L1 5793 6153 -3 213 354 49 0 chr3 179590443 179590525 -47934053 - L2 LINE L2 -34 3238 3153 842 271 121 42 chr3 179590533 179591012 -47933566 - L1ME4a LINE L1 -87 6034 5518 301 243 0 29 chr3 179591325 179591395 -47933183 - LTR67 LTR ERVL -6 551 484 23 0 0 0 chr3 179591996 179592019 -47932559 + AT_rich Low_complexity Low_complexity 1 23 0 228 266 127 0 chr3 179593861 179593940 -47930638 + L2 LINE L2 3199 3287 -26 2182 134 3 0 chr3 179595581 179595886 -47928692 + AluSx SINE Alu 1 306 -6 981 140 48 92 chr3 179596074 179596303 -47928275 + MER20 DNA MER1_type 1 219 0 184 286 14 29 chr3 179596466 179596536 -47928042 - L2 LINE L2 -83 3189 3121 1747 144 10 59 chr3 179597045 179597350 -47927228 + AluJo SINE Alu 2 291 -21 180 268 18 18 chr3 179597467 179597523 -47927055 - MIR3 SINE MIR -2 206 151 197 282 179 0 chr3 179599272 179599350 -47925228 - MIR SINE MIR -6 256 165 1744 158 0 0 chr3 179599529 179599802 -47924776 + AluSx SINE Alu 1 273 -39 692 66 69 7 chr3 179599802 179600084 -47924494 + GA-rich Low_complexity Low_complexity 1 299 0 754 187 6 6 chr3 179600116 179600282 -47924296 + GA-rich Low_complexity Low_complexity 1 166 0 1113 117 19 0 chr3 179600475 179600637 -47923941 - FRAM SINE Alu -12 164 1 262 250 162 47 chr3 179601008 179601156 -47923422 - MIR SINE MIR -71 191 27 2323 73 0 25 chr3 179601293 179601609 -47922969 + AluY SINE Alu 1 308 -3 224 75 0 25 chr3 179601645 179601685 -47922893 + (TTTTG)n Simple_repeat Simple_repeat 2 40 0 293 247 26 13 chr3 179602752 179602829 -47921749 - MIR SINE MIR -165 97 20 2336 149 79 29 chr3 179602901 179603344 -47921234 - MLT1C LTR MaLR 0 467 3 1960 105 3 77 chr3 179604744 179605069 -47919509 + AluSx SINE Alu 1 301 -11 759 148 153 51 chr3 179606243 179606439 -47918139 + MER20 DNA MER1_type 1 216 -3 1480 168 84 35 chr3 179607402 179607688 -47916890 + AluJo SINE Alu 3 302 0 245 314 144 0 chr3 179610296 179610414 -47914164 - L2 LINE L2 0 3272 3138 182 107 0 0 chr3 179611207 179611235 -47913343 + L2 LINE L2 3242 3269 -3 255 61 0 0 chr3 179612024 179612057 -47912521 + (TTCA)n Simple_repeat Simple_repeat 1 33 0 304 356 69 57 chr3 179612057 179612642 -47911936 - L2 LINE L2 -13 3259 2565 214 0 120 80 chr3 179613035 179613085 -47911493 + (TATAA)n Simple_repeat Simple_repeat 3 54 0 282 116 0 0 chr3 179613085 179613128 -47911450 + (TG)n Simple_repeat Simple_repeat 2 44 0 300 282 77 106 chr3 179613289 179613668 -47910910 - L2 LINE L2 -40 3232 2865 1278 242 174 32 chr3 179613718 179614189 -47910389 - MLT1F LTR MaLR 0 542 5 762 200 62 29 chr3 179664503 179664713 -47859865 - L1ME1 LINE L1 -137 6029 5813 503 248 7 0 chr3 179664730 179664871 -47859707 - L1MA10 LINE L1 -11 6323 6182 2352 120 25 3 chr3 179664887 179665255 -47859323 - L1PA16 LINE L1 -18 6148 5773 195 100 0 0 chr3 179665257 179665287 -47859291 + (TTTTTA)n Simple_repeat Simple_repeat 2 31 0 2154 163 0 10 chr3 179665311 179665697 -47858881 - L1PA16 LINE L1 -391 5775 5394 2104 82 8 0 chr3 179666005 179666272 -47858306 - AluSg SINE Alu -41 269 1 778 192 89 0 chr3 179667142 179667288 -47857290 + FRAM SINE Alu 1 159 -7 313 211 0 14 chr3 179667298 179667369 -47857209 - L1MCa LINE L1 -4362 2064 1995 313 326 0 0 chr3 179667311 179667400 -47857178 + L1MC4 LINE L1 6614 6702 -1340 * 333 273 23 0 chr3 179667353 179667441 -47857137 - L1MC4 LINE L1 -1339 6703 6614 258 274 124 73 chr3 179667727 179668001 -47856577 + L3b LINE CR1 1134 1421 -162 246 299 11 0 chr3 179668264 179668351 -47856227 + CT-rich Low_complexity Low_complexity 4 91 0 1948 66 12 0 chr3 179668548 179668804 -47855774 + L1PA5 LINE L1 5896 6154 0 1942 130 12 35 chr3 179668808 179669378 -47855200 - MER4A LTR ERV1 -39 625 1 3706 214 56 9 chr3 179669378 179670368 -47854210 - L1P LINE L1 -2280 3866 2831 408 90 0 39 chr3 179670370 179670448 -47854130 + (TTTC)n Simple_repeat Simple_repeat 2 76 0 264 241 0 0 chr3 179670453 179670511 -47854067 - FLAM SINE Alu -1 132 75 426 238 215 33 chr3 179671400 179671614 -47852964 + MIR SINE MIR 3 255 -7 746 217 140 37 chr3 179671666 179671938 -47852640 + MER5C DNA MER1_type 21 320 -4 644 189 163 20 chr3 179672992 179673145 -47851433 - MER5A DNA MER1_type -6 183 9 21 0 0 0 chr3 179674867 179674888 -47849690 + AT_rich Low_complexity Low_complexity 1 21 0 228 127 25 25 chr3 179675419 179675498 -47849080 + T-rich Low_complexity Low_complexity 6 84 0 226 206 63 32 chr3 179675559 179675622 -47848956 - L2 LINE L2 -1 3271 3207 491 121 31 197 chr3 179675672 179675832 -47848746 + MER53 DNA DNA 4 120 -69 2248 78 0 0 chr3 179675832 179676143 -47848435 + AluY SINE Alu 1 311 0 491 121 31 197 chr3 179676143 179676204 -47848374 + MER53 DNA DNA 120 189 0 451 269 62 14 chr3 179676429 179676574 -47848004 - MIR SINE MIR 0 262 111 647 221 0 8 chr3 179676813 179676935 -47847643 + FLAM_A SINE Alu 1 121 -12 2175 106 7 0 chr3 179677837 179678169 -47846409 - AluSq SINE Alu 0 313 2 2554 209 77 54 chr3 179678436 179679211 -47845367 + MER21B LTR ERV1 13 805 -58 365 280 0 21 chr3 179681673 179681766 -47842812 - L2 LINE L2 -32 3281 3191 1874 145 80 9 chr3 179681768 179682106 -47842472 - MER47A DNA MER2_type -2 364 3 22 0 0 0 chr3 179682201 179682223 -47842355 + AT_rich Low_complexity Low_complexity 1 22 0 2114 114 0 29 chr3 179682291 179682606 -47841972 + AluSx SINE Alu 1 306 -6 888 167 67 29 chr3 179682612 179682822 -47841756 - MER96B DNA MER1_type? -157 260 43 189 329 13 13 chr3 179683519 179683598 -47840980 - MIR SINE MIR -119 143 65 1633 136 145 15 chr3 179683777 179684101 -47840477 + MER47A DNA MER2_type 1 366 0 322 203 13 0 chr3 179684794 179684873 -47839705 + MER116 DNA Mariner 1 80 0 2047 113 0 0 chr3 179685598 179685873 -47838705 - AluSc SINE Alu 0 309 35 2306 96 0 17 chr3 179686825 179687127 -47837451 + AluSx SINE Alu 1 297 -15 24 53 0 0 chr3 179687556 179687594 -47836984 + AT_rich Low_complexity Low_complexity 1 38 0 1727 173 17 7 chr3 179688426 179688721 -47835857 + AluJb SINE Alu 1 298 -14 419 360 90 32 chr3 179689282 179689560 -47835018 - L2 LINE L2 0 3272 2979 684 285 155 16 chr3 179689807 179690350 -47834228 - L2 LINE L2 0 3313 2322 1731 174 15 15 chr3 179690360 179690693 -47833885 - L1MC1 LINE L1 0 6333 6001 683 203 31 88 chr3 179690706 179690933 -47833645 - L2 LINE L2 0 3313 3100 1620 184 27 3 chr3 179691057 179691351 -47833227 + AluSx SINE Alu 1 301 -11 235 329 12 0 chr3 179691532 179691614 -47832964 + MIR SINE MIR 50 132 -76 1928 122 59 0 chr3 179692333 179692620 -47831958 + AluSx SINE Alu 1 304 -8 274 282 83 39 chr3 179692630 179692786 -47831792 - L2 LINE L2 -146 3167 3005 206 222 389 11 chr3 179693056 179693146 -47831432 + L2 LINE L2 3139 3262 -10 24 0 0 0 chr3 179693280 179693304 -47831274 + AT_rich Low_complexity Low_complexity 1 24 0 1370 162 0 14 chr3 179693576 179693798 -47830780 - AluJb SINE Alu -10 302 84 24 67 0 0 chr3 179694375 179694420 -47830158 + AT_rich Low_complexity Low_complexity 1 45 0 237 135 0 0 chr3 179694439 179694491 -47830087 + (T)n Simple_repeat Simple_repeat 1 52 0 1635 135 0 101 chr3 179694789 179695136 -47829442 + AluJo SINE Alu 1 312 0 873 289 97 18 chr3 179696158 179696611 -47827967 - LTR33 LTR ERVL 0 521 33 3369 114 19 48 chr3 179696659 179697071 -47827507 - HSMAR2 DNA Mariner 0 1302 880 518 0 0 16 chr3 179697071 179697134 -47827444 + (TTCC)n Simple_repeat Simple_repeat 4 65 0 978 125 17 6 chr3 179697135 179697311 -47827267 + CT-rich Low_complexity Low_complexity 1 178 0 1574 160 18 35 chr3 179697311 179697593 -47826985 - AluJo SINE Alu -35 277 1 3369 114 19 48 chr3 179697593 179697763 -47826815 - HSMAR2 DNA Mariner -420 882 734 327 327 76 82 chr3 179698051 179698513 -47826065 - L2 LINE L2 0 3272 2814 408 259 36 0 chr3 179698793 179698905 -47825673 + MIR SINE MIR 14 129 -133 1789 184 3 7 chr3 179699342 179699630 -47824948 - AluJo SINE Alu -25 287 1 1972 140 7 3 chr3 179700124 179700424 -47824154 + AluSx SINE Alu 1 301 -11 233 220 0 0 chr3 179700424 179700483 -47824095 + (TA)n Simple_repeat Simple_repeat 1 59 0 504 251 60 36 chr3 179701146 179701313 -47823265 + MER5A DNA MER1_type 4 174 -15 1801 186 10 0 chr3 179701725 179702021 -47822557 - AluJb SINE Alu -13 299 1 194 239 14 0 chr3 179702520 179702591 -47821987 + (TA)n Simple_repeat Simple_repeat 2 73 0 813 363 86 32 chr3 179702833 179703695 -47820883 - L2 LINE L2 0 3272 2366 766 167 8 0 chr3 179703742 179703868 -47820710 + FLAM_A SINE Alu 11 137 -5 239 281 10 52 chr3 179703896 179703992 -47820586 - L2 LINE L2 -1011 2303 2212 480 294 155 28 chr3 179704037 179704509 -47820069 - L2 LINE L2 -1230 2084 1553 2366 84 3 0 chr3 179704566 179704863 -47819715 + AluSc SINE Alu 1 298 -11 363 338 99 25 chr3 179705684 179705885 -47818693 - L2 LINE L2 0 3272 3057 231 114 0 0 chr3 179705897 179705932 -47818646 + (TG)n Simple_repeat Simple_repeat 1 35 0 332 102 0 17 chr3 179705932 179705991 -47818587 + (GA)n Simple_repeat Simple_repeat 2 59 0 2364 90 3 0 chr3 179706365 179706665 -47817913 - AluSc SINE Alu -8 301 1 8920 160 13 18 chr3 179707159 179709424 -47815154 - L1M2 LINE L1 -510 6429 4176 1158 178 0 0 chr3 179709507 179709709 -47814869 + L1M2c LINE L1 70 271 -6518 2380 115 13 5 chr3 179709719 179710109 -47814469 + L1M2 LINE L1 5305 5697 -600 * 3714 172 58 5 chr3 179710108 179710845 -47813733 - L1M2 LINE L1 -6000 789 14 1688 177 3 30 chr3 179711405 179711710 -47812868 + AluJo SINE Alu 1 297 -15 40254 55 3 3 chr3 179712151 179718275 -47806303 - L1PA5 LINE L1 -21 6133 11 23 0 0 0 chr3 179718366 179718389 -47806189 + AT_rich Low_complexity Low_complexity 1 23 0 210 273 0 0 chr3 179719365 179719409 -47805169 + L2 LINE L2 3204 3247 -25 273 220 156 14 chr3 179720657 179720798 -47803780 - L1ME4a LINE L1 -1 6120 5960 204 143 0 0 chr3 179721174 179721216 -47803362 + (TA)n Simple_repeat Simple_repeat 1 42 0 932 282 18 0 chr3 179721363 179721583 -47802995 - MER58A DNA MER1_type 0 224 1 257 289 80 32 chr3 179721660 179721847 -47802731 + HAL1 LINE L1 1 196 -2311 1091 188 33 0 chr3 179722908 179723121 -47801457 - AluJb SINE Alu -11 301 82 424 302 116 0 chr3 179723277 179723454 -47801124 - MIR SINE MIR -62 146 3 21 0 0 0 chr3 179725484 179725505 -47799073 + AT_rich Low_complexity Low_complexity 1 21 0 3139 180 3 17 chr3 179725505 179726099 -47798479 + L1MB5 LINE L1 5581 6166 -8 401 348 43 24 chr3 179726282 179726446 -47798132 - MIR SINE MIR -90 172 6 24 53 0 0 chr3 179729187 179729225 -47795353 + AT_rich Low_complexity Low_complexity 1 38 0 673 286 101 9 chr3 179729315 179729532 -47795046 + MIR SINE MIR 26 262 0 324 172 35 46 chr3 179730025 179730112 -47794466 - MIR SINE MIR -1 261 176 358 349 0 0 chr3 179730112 179730221 -47794357 - MER81 DNA DNA -5 109 1 458 176 282 23 chr3 179730221 179730352 -47794226 - MIR SINE MIR -86 176 12 27 0 0 0 chr3 179730829 179730856 -47793722 + AT_rich Low_complexity Low_complexity 1 27 0 6198 115 18 6 chr3 179732125 179733965 -47790613 + L1PA11 LINE L1 4289 6153 -21 2165 91 3 14 chr3 179733969 179734256 -47790322 + AluSx SINE Alu 5 288 -24 3186 151 2 5 chr3 179735792 179736355 -47788223 + L1MB3 LINE L1 5587 6147 -36 232 258 0 15 chr3 179736432 179736498 -47788080 - L2 LINE L2 -90 3223 3159 210 37 0 0 chr3 179736518 179736545 -47788033 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 286 256 325 0 chr3 179736737 179736854 -47787724 + MIR SINE MIR 20 174 -88 310 341 28 115 chr3 179737895 179738147 -47786431 + L2 LINE L2 2947 3176 -96 181 290 75 37 chr3 179738200 179738307 -47786271 - L2 LINE L2 0 3313 3203 677 203 8 8 chr3 179739425 179739558 -47785020 - FLAM_A SINE Alu 0 133 1 1820 177 3 0 chr3 179739637 179739997 -47784581 - AluJb SINE Alu 0 361 1 202 293 89 24 chr3 179740099 179740222 -47784356 + MIR SINE MIR 2 132 -130 205 264 195 11 chr3 179740324 179740411 -47784167 + MIR SINE MIR 114 216 -46 182 200 0 0 chr3 179740436 179740466 -47784112 + L2 LINE L2 3208 3237 -35 31 44 0 0 chr3 179740905 179740950 -47783628 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr3 179741956 179741984 -47782594 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 179742932 179742953 -47781625 + AT_rich Low_complexity Low_complexity 1 21 0 258 163 23 0 chr3 179743978 179744021 -47780557 + AluSp SINE Alu 132 175 -128 * 489 123 75 19 chr3 179744018 179744124 -47780454 + MSTC LTR MaLR 315 426 -2 805 160 0 8 chr3 179744614 179744739 -47779839 - FLAM_C SINE Alu -9 124 1 357 309 32 41 chr3 179744845 179744988 -47779590 - MIR SINE MIR -64 144 4 414 251 33 85 chr3 179745572 179745744 -47778834 - L1ME3A LINE L1 -223 5947 5785 1994 141 0 0 chr3 179745744 179746052 -47778526 - AluSx SINE Alu 0 308 1 414 251 33 85 chr3 179746052 179746089 -47778489 - L1ME3A LINE L1 -385 5785 5748 889 137 0 14 chr3 179746269 179746408 -47778170 - FRAM SINE Alu -8 168 32 266 219 76 38 chr3 179746500 179746605 -47777973 + LTR68 LTR ERV1 71 179 -561 261 294 11 11 chr3 179747020 179747112 -47777466 + L1ME LINE L1 5611 5702 -468 2035 106 39 35 chr3 179748711 179749023 -47775555 - AluSq SINE Alu 0 313 1 1915 155 17 0 chr3 179749025 179749315 -47775263 - AluSx SINE Alu -17 295 1 580 208 0 9 chr3 179749499 179749605 -47774973 + FLAM_C SINE Alu 7 111 -32 230 146 42 0 chr3 179749748 179749796 -47774782 + (TAGA)n Simple_repeat Simple_repeat 4 53 0 188 326 0 0 chr3 179749930 179749976 -47774602 - MIR SINE MIR -13 249 204 2093 247 66 14 chr3 179751240 179751644 -47772934 - MLT1E LTR MaLR -1 592 149 426 20 0 0 chr3 179751644 179751695 -47772883 + (TG)n Simple_repeat Simple_repeat 2 52 0 2093 247 66 14 chr3 179751695 179751853 -47772725 - MLT1E LTR MaLR -444 149 1 489 261 25 0 chr3 179752954 179753073 -47771505 - L2 LINE L2 -6 3307 3186 1916 166 0 6 chr3 179753860 179754174 -47770404 + AluSx SINE Alu 1 312 0 28 0 0 26 chr3 179754319 179754344 -47770234 + AT_rich Low_complexity Low_complexity 1 26 -12 1904 155 0 7 chr3 179754344 179754634 -47769944 - AluSx SINE Alu -24 288 1 28 0 0 26 chr3 179754634 179754647 -47769931 + AT_rich Low_complexity Low_complexity 26 38 0 863 260 31 18 chr3 179755729 179755952 -47768626 - MIR SINE MIR -35 227 2 182 390 49 8 chr3 179757302 179757425 -47767153 - L2 LINE L2 -1 3271 3144 219 69 0 0 chr3 179757488 179757517 -47767061 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 623 279 7 0 chr3 179758362 179758502 -47766076 - MIR SINE MIR -106 156 16 943 189 0 6 chr3 179759355 179759514 -47765064 + FAM SINE Alu 1 158 -17 2344 90 3 0 chr3 179759889 179760189 -47764389 + AluSc SINE Alu 1 301 -8 332 102 0 17 chr3 179760563 179760622 -47763956 + (TC)n Simple_repeat Simple_repeat 2 59 0 231 114 0 0 chr3 179760622 179760657 -47763921 + (CA)n Simple_repeat Simple_repeat 1 35 0 357 338 99 25 chr3 179760669 179760870 -47763708 + L2 LINE L2 3057 3272 0 2329 87 0 7 chr3 179761691 179761991 -47762587 - AluSc SINE Alu -11 298 1 689 165 8 24 chr3 179761999 179762126 -47762452 - FLAM_C SINE Alu -8 125 1 643 211 38 92 chr3 179762708 179762838 -47761740 + AluJo SINE Alu 1 120 -192 2703 26 0 0 chr3 179762838 179763141 -47761437 + AluY SINE Alu 1 303 -8 643 211 38 92 chr3 179763141 179763195 -47761383 + AluJo SINE Alu 120 175 -137 534 107 78 19 chr3 179763195 179763298 -47761280 + MSTC LTR MaLR 318 426 -2 529 328 145 25 chr3 179763303 179763696 -47760882 - L2 LINE L2 -723 2591 2152 25 31 0 0 chr3 179764439 179764471 -47760107 + AT_rich Low_complexity Low_complexity 1 32 0 371 248 51 43 chr3 179764873 179764990 -47759588 + L2 LINE L2 3187 3304 -9 730 247 55 96 chr3 179765123 179765507 -47759071 + MLT1I LTR MaLR 42 409 0 849 231 122 4 chr3 179765509 179765738 -47758840 + MIR SINE MIR 7 262 0 2064 118 14 0 chr3 179765966 179766283 -47758295 + AluSx SINE Alu 1 321 0 33 25 0 0 chr3 179766362 179766402 -47758176 + AT_rich Low_complexity Low_complexity 1 40 0 312 311 131 0 chr3 179766523 179766645 -47757933 + L2 LINE L2 3134 3271 -1 319 349 47 18 chr3 179766664 179766833 -47757745 + L1ME4a LINE L1 3965 4138 -2008 382 262 29 19 chr3 179766834 179766937 -47757641 + L2 LINE L2 3189 3292 -21 597 298 28 0 chr3 179767070 179767248 -47757330 - MIR SINE MIR 0 262 80 425 344 77 28 chr3 179767252 179767615 -47756963 + L1ME4a LINE L1 4476 4856 -1290 495 311 89 54 chr3 179767688 179768724 -47755854 + L1ME4a LINE L1 4013 5084 -1062 256 264 44 11 chr3 179768729 179768820 -47755758 + L1ME4a LINE L1 5482 5575 -591 1792 127 117 6 chr3 179768970 179769285 -47755293 + L1PB3 LINE L1 5777 6123 -31 346 282 71 39 chr3 179769363 179769648 -47754930 + L1ME4a LINE L1 5614 5915 -206 835 260 134 21 chr3 179770203 179770584 -47753994 + L1ME4a LINE L1 5380 5803 -318 2832 0 0 3 chr3 179770638 179770945 -47753633 + AluYa5 SINE Alu 1 306 -5 416 76 0 15 chr3 179770945 179771011 -47753567 + (TAGA)n Simple_repeat Simple_repeat 2 66 0 234 212 153 12 chr3 179771205 179771290 -47753288 + L1ME4a LINE L1 5973 6069 -52 26 0 0 0 chr3 179772008 179772034 -47752544 + AT_rich Low_complexity Low_complexity 1 26 0 238 263 179 21 chr3 179772609 179772704 -47751874 - L2 LINE L2 0 3272 3163 193 200 0 0 chr3 179772791 179772826 -47751752 - L2 LINE L2 -253 3060 3026 202 239 0 0 chr3 179772870 179772916 -47751662 + A-rich Low_complexity Low_complexity 1 46 0 412 152 95 63 chr3 179772952 179773110 -47751468 - Charlie7 DNA MER1_type -23 2589 2427 263 296 23 0 chr3 179773100 179773188 -47751390 - Charlie7 DNA MER1_type -2511 101 12 * 1409 295 180 40 chr3 179773190 179773350 -47751228 - L2 LINE L2 -428 2886 2750 1731 183 30 25 chr3 179773350 179773711 -47750867 - MLT1A1 LTR MaLR -2 363 1 1409 295 180 40 chr3 179773711 179774660 -47749918 - L2 LINE L2 -564 2750 1621 717 280 59 3 chr3 179775948 179776168 -47748410 + MIR SINE MIR 21 248 -14 199 231 0 108 chr3 179776356 179776421 -47748157 + L2 LINE L2 3200 3257 -15 2008 154 0 3 chr3 179776460 179776772 -47747806 - AluJb SINE Alu -1 311 1 500 291 95 24 chr3 179776776 179777071 -47747507 - MARNA DNA Mariner -231 355 40 207 346 38 38 chr3 179777347 179777480 -47747098 - L3b LINE CR1 -168 1415 1283 247 346 44 38 chr3 179777496 179777655 -47746923 + MER5A DNA MER1_type 8 167 -22 573 280 35 20 chr3 179777674 179777911 -47746667 + MIR SINE MIR 1 240 -22 794 160 0 8 chr3 179778939 179779064 -47745514 - FLAM_C SINE Alu -9 124 1 358 309 32 41 chr3 179779170 179779313 -47745265 - MIR SINE MIR -64 144 4 260 251 33 85 chr3 179779897 179780069 -47744509 - L1ME3A LINE L1 -223 5947 5785 1983 141 0 0 chr3 179780069 179780377 -47744201 - AluSx SINE Alu 0 308 1 260 251 33 85 chr3 179780377 179780414 -47744164 - L1ME3A LINE L1 -385 5785 5748 874 137 0 14 chr3 179780594 179780733 -47743845 - FRAM SINE Alu -8 168 32 327 234 129 113 chr3 179780825 179781206 -47743372 + LTR68 LTR ERV1 71 457 -283 295 299 70 49 chr3 179781345 179781629 -47742949 + L1ME3A LINE L1 5611 5900 -270 2034 103 39 35 chr3 179783036 179783348 -47741230 - AluSq SINE Alu 0 313 1 1887 155 17 0 chr3 179783350 179783640 -47740938 - AluSx SINE Alu -17 295 1 1922 163 0 7 chr3 179784075 179784375 -47740203 - AluJb SINE Alu -14 298 1 191 374 93 7 chr3 179785377 179785516 -47739062 + L3b LINE CR1 1428 1578 -5 807 191 11 66 chr3 179786267 179786450 -47738128 + AluJo SINE Alu 110 282 -30 378 274 47 28 chr3 179786605 179786711 -47737867 + MIR SINE MIR 45 152 -110 1852 141 10 20 chr3 179786768 179787065 -47737513 + AluJb SINE Alu 1 294 -18 203 32 65 0 chr3 179787067 179787098 -47737480 + (CAATA)n Simple_repeat Simple_repeat 2 34 0 727 251 96 0 chr3 179787647 179787834 -47736744 + MIR SINE MIR 52 256 -6 180 77 0 0 chr3 179788079 179788105 -47736473 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 1817 163 3 3 chr3 179788105 179788389 -47736189 - AluSx SINE Alu -28 284 1 527 310 70 80 chr3 179789701 179789815 -47734763 + HAL1 LINE L1 13 127 -2380 2343 78 3 3 chr3 179789815 179790109 -47734469 + AluSc SINE Alu 1 294 -15 527 310 70 80 chr3 179790109 179790407 -47734171 + HAL1 LINE L1 127 421 -2086 359 266 65 0 chr3 179790491 179790615 -47733963 + HAL1 LINE L1 746 877 -1630 2105 127 16 3 chr3 179790861 179791190 -47733388 + AluSx SINE Alu 1 333 0 667 294 122 29 chr3 179791617 179791994 -47732584 - L2 LINE L2 -1 3312 2901 27 0 0 0 chr3 179793250 179793277 -47731301 + AT_rich Low_complexity Low_complexity 1 27 0 603 267 120 36 chr3 179793479 179793704 -47730874 - MIR SINE MIR -1 261 18 2738 205 3 40 chr3 179793755 179794330 -47730248 - MLT2B3 LTR ERVL 0 554 1 1596 204 122 11 chr3 179795425 179795990 -47728588 - Charlie2 DNA MER1_type -5 2857 2230 593 259 55 59 chr3 179796001 179796221 -47728357 - Charlie2 DNA MER1_type -2507 355 137 1535 218 116 74 chr3 179797982 179798551 -47726027 + MLT1E LTR MaLR 1 593 0 265 315 250 28 chr3 179798674 179799366 -47725212 - L2 LINE L2 -904 2410 1565 436 322 71 87 chr3 179799376 179799826 -47724752 - L2 LINE L2 0 3272 2830 408 327 106 58 chr3 179799960 179800358 -47724220 - L2 LINE L2 -550 2764 2348 975 263 89 13 chr3 179801965 179802356 -47722222 - HsTC2 DNA Tc2 -1452 446 26 4179 149 67 26 chr3 179802729 179803788 -47720790 - L1PA7 LINE L1 -3 6151 5050 4081 170 19 0 chr3 179803784 179804574 -47720004 + L1PA7 LINE L1 4231 5035 -1111 * 644 36 12 0 chr3 179805705 179805788 -47718790 + (TC)n Simple_repeat Simple_repeat 2 85 0 336 336 34 20 chr3 179806385 179806531 -47718047 - L3 LINE CR1 -1 1576 1429 322 259 18 36 chr3 179806718 179806830 -47717748 - L3 LINE CR1 -216 1361 1252 1027 162 0 0 chr3 179806860 179807008 -47717570 + FAM SINE Alu 1 148 -37 824 129 21 17 chr3 179807008 179807248 -47717330 + GA-rich Low_complexity Low_complexity 1 241 0 1842 168 18 58 chr3 179807347 179807727 -47716851 + MLT1A1 LTR MaLR 1 365 0 546 332 39 58 chr3 179807737 179808455 -47716123 - L2 LINE L2 -1 3271 2494 1203 271 66 3 chr3 179808954 179809316 -47715262 + LTR16A LTR ERVL 57 441 -9 879 213 0 18 chr3 179809951 179810120 -47714458 - FRAM SINE Alu 0 166 1 940 206 0 18 chr3 179810159 179810329 -47714249 + FRAM SINE Alu 1 163 -13 2166 115 3 10 chr3 179811183 179811488 -47713090 + AluSx SINE Alu 1 303 -9 369 0 0 0 chr3 179811729 179811770 -47712808 + (TG)n Simple_repeat Simple_repeat 2 42 0 5414 184 103 15 chr3 179812446 179813783 -47710795 + Charlie1a DNA MER1_type 1 1455 0 487 295 85 25 chr3 179813788 179814154 -47710424 - L1ME LINE L1 -511 5651 5264 1946 133 10 26 chr3 179814182 179814490 -47710088 - AluJb SINE Alu -4 308 6 427 239 205 0 chr3 179814531 179814736 -47709842 - L1ME2 LINE L1 0 6164 5918 932 106 23 15 chr3 179814737 179814869 -47709709 + AluSq/x SINE Alu 1 133 -179 1385 187 10 3 chr3 179814875 179815169 -47709409 - L1ME2 LINE L1 -240 5924 5629 715 233 66 89 chr3 179815189 179815530 -47709048 - L1MEd LINE L1 -5020 1099 771 2118 152 3 0 chr3 179815530 179815833 -47708745 - AluSx SINE Alu -8 304 1 715 233 66 89 chr3 179815833 179815963 -47708615 - L1MEd LINE L1 -5348 771 639 28 61 0 0 chr3 179815963 179816012 -47708566 + AT_rich Low_complexity Low_complexity 1 49 0 1068 283 159 13 chr3 179816553 179817080 -47707498 - L1MEd LINE L1 -5514 605 2 1647 171 23 89 chr3 179818014 179818405 -47706173 + MLT1A1 LTR MaLR 1 365 0 4241 123 15 60 chr3 179819053 179819951 -47704627 + L1MA8 LINE L1 5386 6219 -72 550 327 68 20 chr3 179821338 179821781 -47702797 + L1M4 LINE L1 4814 5277 -869 2014 153 0 3 chr3 179821791 179822091 -47702487 + AluSx SINE Alu 3 301 -11 35 41 0 0 chr3 179822155 179822204 -47702374 + AT_rich Low_complexity Low_complexity 1 49 0 305 364 116 0 chr3 179822629 179822879 -47701699 - L2 LINE L2 -560 2754 2476 21 0 0 0 chr3 179823683 179823704 -47700874 + AT_rich Low_complexity Low_complexity 1 21 0 2159 137 0 9 chr3 179824108 179824423 -47700155 + AluSx SINE Alu 1 312 0 438 266 142 24 chr3 179825440 179825609 -47698969 + MIR SINE MIR 60 248 -14 237 349 171 23 chr3 179825612 179826214 -47698364 + L2 LINE L2 2052 2742 -572 356 153 82 35 chr3 179826568 179826653 -47697925 - MLT1I LTR MaLR -6 403 315 266 269 112 76 chr3 179828748 179828997 -47695581 - L2 LINE L2 -2 3311 3054 2940 287 157 15 chr3 179829339 179830456 -47694122 - L2 LINE L2 -735 2579 1253 2450 151 26 16 chr3 179830456 179830880 -47693698 + MSTA LTR MaLR 1 428 0 2940 287 157 15 chr3 179830880 179831053 -47693525 - L2 LINE L2 -2061 1253 1106 380 309 17 13 chr3 179831469 179831723 -47692855 - MLT1H LTR MaLR -139 270 47 384 236 52 20 chr3 179832506 179832667 -47691911 + MLT1H LTR MaLR 60 260 -229 210 255 0 20 chr3 179834331 179834382 -47690196 + CT-rich Low_complexity Low_complexity 3 52 0 1827 165 100 0 chr3 179834647 179834986 -47689592 - MLT2B3 LTR ERVL -181 373 1 1524 213 100 2 chr3 179834986 179835244 -47689334 + L1MC4 LINE L1 7464 7776 -266 1502 187 0 12 chr3 179835244 179835501 -47689077 + AluJo SINE Alu 1 254 -58 1524 213 100 2 chr3 179835501 179835642 -47688936 + L1MC4 LINE L1 7776 7902 -140 21 36 0 0 chr3 179835698 179835726 -47688852 + AT_rich Low_complexity Low_complexity 1 28 0 266 158 0 18 chr3 179836638 179836695 -47687883 + L1ME4a LINE L1 6054 6109 -12 1416 206 20 0 chr3 179838198 179838450 -47686128 + AluJb SINE Alu 21 277 -35 204 40 0 0 chr3 179838458 179838483 -47686095 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 242 380 73 39 chr3 179839273 179839452 -47685126 - L2 LINE L2 -9 3263 3079 * 392 281 25 58 chr3 179839421 179839542 -47685036 + MIR SINE MIR 8 124 -138 309 125 83 14 chr3 179839543 179839615 -47684963 - L1MCa LINE L1 -4355 2071 1995 228 197 33 33 chr3 179839621 179839682 -47684896 + (CATA)n Simple_repeat Simple_repeat 2 62 0 308 215 114 0 chr3 179839686 179839765 -47684813 + MIR SINE MIR 154 241 -21 21 57 0 0 chr3 179840119 179840154 -47684424 + AT_rich Low_complexity Low_complexity 1 35 0 2454 94 0 0 chr3 179840276 179840584 -47683994 + AluSg SINE Alu 1 308 -2 1879 137 6 75 chr3 179841434 179841582 -47682996 + AluJo SINE Alu 1 117 -195 234 0 0 0 chr3 179841582 179841608 -47682970 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 1879 137 6 75 chr3 179841608 179841780 -47682798 + AluJo SINE Alu 117 299 -13 794 165 8 8 chr3 179842705 179842838 -47681740 + FLAM_A SINE Alu 1 133 0 2061 150 0 6 chr3 179842842 179843156 -47681422 + AluSx SINE Alu 1 312 0 21 0 0 0 chr3 179843293 179843314 -47681264 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 179843453 179843475 -47681103 + AT_rich Low_complexity Low_complexity 1 22 0 1586 254 87 42 chr3 179843654 179843868 -47680710 + HAL1 LINE L1 1288 1491 -1016 2365 109 0 0 chr3 179843868 179844172 -47680406 + AluSx SINE Alu 1 304 -8 1586 254 87 42 chr3 179844172 179844679 -47679899 + HAL1 LINE L1 1491 2042 -465 308 236 11 22 chr3 179844676 179844717 -47679861 + L1MC4 LINE L1 7646 7686 -356 * 1935 153 0 13 chr3 179844717 179845017 -47679561 + AluSx SINE Alu 1 296 -16 308 236 11 22 chr3 179845017 179845064 -47679514 + L1MC4 LINE L1 7686 7733 -309 7370 153 17 10 chr3 179845093 179845741 -47678837 - L1PA15 LINE L1 -6 6159 5517 2590 106 8 0 chr3 179845741 179846119 -47678459 - L1PA10 LINE L1 -1 6167 5787 7370 153 17 10 chr3 179846119 179847696 -47676882 - L1PA15 LINE L1 -648 5517 3867 397 102 0 0 chr3 179847700 179847759 -47676819 - MER4B LTR ERV1 0 610 552 16257 45 8 0 chr3 179847759 179849887 -47674691 + L1P LINE L1 2778 4921 -1225 663 23 76 29 chr3 180050497 180050669 -47473909 + (TA)n Simple_repeat Simple_repeat 1 180 0 200 208 21 0 chr3 180050880 180050928 -47473650 + (CACCAT)n Simple_repeat Simple_repeat 2 50 0 2488 40 0 49 chr3 180051072 180051399 -47473179 - AluY SINE Alu 0 311 1 236 338 50 14 chr3 180051546 180051685 -47472893 + L2 LINE L2 2616 2759 -555 1211 198 0 16 chr3 180051685 180051927 -47472651 - MLT1D LTR MaLR 0 505 268 292 234 208 0 chr3 180051992 180052069 -47472509 + L2 LINE L2 3220 3312 -1 280 333 147 13 chr3 180052213 180052363 -47472215 + MIR SINE MIR 20 189 -73 634 349 105 37 chr3 180055403 180056331 -47468247 + L2 LINE L2 2255 3254 -18 466 348 103 45 chr3 180056977 180057557 -47467021 + L2 LINE L2 2249 2862 -452 1338 211 166 47 chr3 180060256 180060707 -47463871 - MLT1D LTR MaLR 0 505 1 214 217 0 0 chr3 180060827 180060873 -47463705 - L2 LINE L2 -344 2970 2925 264 200 0 0 chr3 180061313 180061373 -47463205 + (TA)n Simple_repeat Simple_repeat 2 61 0 215 291 58 39 chr3 180064526 180064629 -47459949 + L2 LINE L2 3199 3303 -10 1884 142 3 24 chr3 180064866 180065161 -47459417 - AluSx SINE Alu -23 289 1 1906 178 83 20 chr3 180065782 180066225 -47458353 + L1MB8 LINE L1 5563 6033 -145 959 124 90 15 chr3 180066255 180066456 -47458122 - L1PA7 LINE L1 0 6154 5939 346 277 95 61 chr3 180068580 180068728 -47455850 - MIR SINE MIR -13 249 97 278 208 0 94 chr3 180068845 180068951 -47455627 - Charlie7 DNA MER1_type -1 2611 2516 901 253 59 46 chr3 180068970 180069513 -47455065 - Charlie7 DNA MER1_type -1928 684 99 310 247 62 10 chr3 180071044 180071141 -47453437 + L1ME4a LINE L1 5962 6063 -58 238 119 34 0 chr3 180071161 180071220 -47453358 - L1MA4 LINE L1 -5 6295 6235 624 93 21 0 chr3 180071225 180071322 -47453256 - L1MA3 LINE L1 0 6305 6207 5198 154 7 4 chr3 180071332 180072285 -47452293 - L1 LINE L1 -1202 4944 3989 5089 76 3 3 chr3 180072395 180073488 -47451090 + L1PA7 LINE L1 4860 5953 -201 320 281 88 111 chr3 180074264 180074605 -47449973 - L1M2 LINE L1 -5498 1351 1019 549 293 91 35 chr3 180075100 180075506 -47449072 + L1MC/D LINE L1 5372 5800 -2008 40518 40 23 2 chr3 180075704 180081730 -47442848 - L1PA4 LINE L1 -2 6153 4 2637 124 0 132 chr3 180081729 180082341 -47442237 - L1PB1 LINE L1 -46 6105 5575 * 10574 194 23 15 chr3 180083192 180084179 -47440399 + L1PA16 LINE L1 2510 3488 -2678 180 0 0 0 chr3 180084179 180084199 -47440379 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 10574 194 23 15 chr3 180084199 180086840 -47437738 + L1PA16 LINE L1 3488 6158 -8 405 324 22 52 chr3 180088268 180088461 -47436117 - MIR SINE MIR -51 211 23 1550 183 103 38 chr3 180090281 180090728 -47433850 - MLT1D LTR MaLR -2 503 28 198 224 0 0 chr3 180092661 180092710 -47431868 + (CA)n Simple_repeat Simple_repeat 2 50 0 14554 133 24 12 chr3 180093090 180095442 -47429136 - Tigger1 DNA MER2_type 0 2418 36 229 47 47 23 chr3 180095442 180095485 -47429093 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 14554 133 24 12 chr3 180095485 180095522 -47429056 - Tigger1 DNA MER2_type -2382 36 1 439 119 0 107 chr3 180096031 180096115 -47428463 + MER20 DNA MER1_type 4 78 -141 448 265 60 20 chr3 180096193 180096344 -47428234 + MIR SINE MIR 106 262 0 1188 195 76 0 chr3 180096639 180096946 -47427632 - MER33 DNA MER1_type -5 319 1 277 313 0 50 chr3 180097387 180097486 -47427092 + MIR3 SINE MIR 112 205 -3 * 281 317 186 12 chr3 180097485 180097646 -47426932 + L3 LINE CR1 265 453 -1124 191 162 27 0 chr3 180097682 180097719 -47426859 - L2 LINE L2 -3 3310 3273 4924 118 32 11 chr3 180097750 180097936 -47426642 - L1PB3 LINE L1 -1 6153 5972 2709 7 3 0 chr3 180097936 180098233 -47426345 - AluYa5 SINE Alu -13 298 1 4924 118 32 11 chr3 180098233 180099189 -47425389 - L1PB3 LINE L1 -182 5972 5007 222 269 0 0 chr3 180099494 180099546 -47425032 - MER5A DNA MER1_type 0 189 138 216 333 0 0 chr3 180101614 180101674 -47422904 + CT-rich Low_complexity Low_complexity 3 62 0 287 295 158 6 chr3 180102279 180102462 -47422116 + MIR SINE MIR 8 218 -44 202 200 0 43 chr3 180102470 180102540 -47422038 + (ATG)n Simple_repeat Simple_repeat 3 69 0 351 253 88 11 chr3 180102565 180102656 -47421922 + MIR SINE MIR 2 99 -163 1967 230 111 31 chr3 180102657 180103200 -47421378 - MLT1E LTR MaLR -1 592 7 671 249 41 12 chr3 180103200 180103369 -47421209 + MIR SINE MIR 89 262 0 280 339 28 0 chr3 180103543 180103652 -47420926 + MIR3 SINE MIR 44 155 -53 983 260 58 72 chr3 180105097 180105635 -47418943 - Charlie7 DNA MER1_type -2050 562 33 520 306 58 6 chr3 180106262 180106435 -47418143 + MIR SINE MIR 81 262 0 572 237 92 30 chr3 180106901 180107245 -47417333 - MLT1J2 LTR MaLR -13 437 46 1816 156 55 27 chr3 180107976 180108341 -47416237 - THE1C LTR MaLR 0 375 1 1471 253 148 12 chr3 180109646 180110560 -47414018 - L2 LINE L2 0 3313 2262 21 0 0 0 chr3 180111424 180111445 -47413133 + AT_rich Low_complexity Low_complexity 1 21 0 453 273 102 58 chr3 180111693 180112011 -47412567 + L1MC4a LINE L1 4346 4649 -1497 1706 160 28 3 chr3 180112011 180112288 -47412290 + AluSx SINE Alu 1 285 -23 192 77 0 0 chr3 180112288 180112314 -47412264 + (CAAG)n Simple_repeat Simple_repeat 2 27 0 453 273 102 58 chr3 180112318 180112679 -47411899 + L1MC4a LINE L1 4649 5051 -1095 2435 99 0 0 chr3 180112714 180113027 -47411551 - AluSq SINE Alu 0 313 1 928 294 80 13 chr3 180113266 180113806 -47410772 + L1MC4a LINE L1 5351 5926 -1882 24 0 0 0 chr3 180114030 180114054 -47410524 + AT_rich Low_complexity Low_complexity 1 24 0 1246 235 48 70 chr3 180114256 180114903 -47409675 + L1MC2 LINE L1 4069 4701 -1445 786 231 131 9 chr3 180114904 180115006 -47409572 + LTR16A1 LTR ERVL 201 289 -168 2254 206 48 8 chr3 180115006 180115505 -47409073 + LTR40a LTR ERVL 1 519 0 786 231 131 9 chr3 180115505 180115631 -47408947 + LTR16A1 LTR ERVL 289 457 0 1714 147 17 17 chr3 180115709 180116001 -47408577 - AluJo SINE Alu -20 292 1 184 418 9 0 chr3 180116148 180116258 -47408320 - L2 LINE L2 -683 2631 2521 4269 18 0 0 chr3 180116896 180117385 -47407193 + L1PA2 LINE L1 5665 6153 -2 277 148 0 33 chr3 180117390 180117451 -47407127 + L1PB1 LINE L1 6090 6148 -3 1464 128 46 122 chr3 180117464 180117842 -47406736 - THE1C LTR MaLR -27 401 1 358 357 0 23 chr3 180117950 180118079 -47406499 + L2 LINE L2 3147 3272 0 186 361 28 0 chr3 180118192 180118264 -47406314 - L2 LINE L2 -8 3305 3232 286 376 32 32 chr3 180118371 180118528 -47406050 - L2 LINE L2 -202 3070 2914 5564 175 33 19 chr3 180119214 180120545 -47404033 + L1MC2 LINE L1 4997 6344 0 383 337 86 51 chr3 180120885 180121280 -47403298 + L1MEd LINE L1 849 1257 -4862 6463 193 35 30 chr3 180121339 180123757 -47400821 + L1M3f LINE L1 2 2406 -3922 1734 197 10 3 chr3 180123757 180124066 -47400512 + AluJb SINE Alu 1 311 -1 6463 193 35 30 chr3 180124066 180125071 -47399507 + L1M3f LINE L1 2406 3443 -2885 1979 149 3 3 chr3 180125071 180125366 -47399212 + AluSx SINE Alu 1 295 -17 6463 193 35 30 chr3 180125366 180125497 -47399081 + L1M3f LINE L1 3443 3572 -2756 335 247 62 10 chr3 180126501 180126598 -47397980 + L1ME4a LINE L1 5962 6063 -58 251 119 34 0 chr3 180126618 180126677 -47397901 - L1MA4 LINE L1 -5 6295 6235 603 103 21 0 chr3 180126682 180126779 -47397799 - L1MA3 LINE L1 0 6305 6207 5224 171 11 1 chr3 180126789 180127760 -47396818 - L1 LINE L1 -1202 4944 3964 2555 219 108 81 chr3 180127771 180128696 -47395882 + L1M3f LINE L1 4012 5001 -1335 483 18 0 0 chr3 180128696 180128752 -47395826 + (TA)n Simple_repeat Simple_repeat 2 57 0 2555 219 108 81 chr3 180128752 180129270 -47395308 + L1M3f LINE L1 5001 5503 -833 7816 168 21 4 chr3 180129272 180131686 -47392892 - L1PB1 LINE L1 -8 6143 3697 2294 194 37 54 chr3 180131713 180132284 -47392294 + L1ME1 LINE L1 5273 5833 -333 420 215 56 9 chr3 180132327 180132434 -47392144 + L1ME1 LINE L1 5809 5920 -246 10767 127 27 36 chr3 180132434 180134108 -47390470 - Tigger2 DNA MER2_type 0 2718 1061 1926 156 10 0 chr3 180134108 180134403 -47390175 - AluSx SINE Alu -14 298 1 10767 127 27 36 chr3 180134403 180134546 -47390032 - Tigger2 DNA MER2_type -1657 1061 918 1456 180 57 18 chr3 180134548 180134831 -47389747 - AluJo SINE Alu -2 310 17 2773 241 92 84 chr3 180134851 180135324 -47389254 + L1M4 LINE L1 2238 2706 -3440 1347 152 4 8 chr3 180135324 180135561 -47389017 - L1MB7 LINE L1 -8 6176 5941 2773 241 92 84 chr3 180135561 180135899 -47388679 + L1M4 LINE L1 2706 3040 -3106 1422 192 49 11 chr3 180135899 180136185 -47388393 + AluJo SINE Alu 3 299 -13 2773 241 92 84 chr3 180136185 180136300 -47388278 + L1M4 LINE L1 3040 3153 -2993 780 183 0 0 chr3 180136300 180136420 -47388158 + FLAM_A SINE Alu 1 120 -13 2773 241 92 84 chr3 180136420 180137258 -47387320 + L1M4 LINE L1 3153 4017 -2129 42544 44 2 0 chr3 180137373 180142584 -47381994 - L1P LINE L1 -926 5220 1 443 256 123 14 chr3 180142645 180142938 -47381640 + L1ME4a LINE L1 5793 6117 -4 422 323 62 99 chr3 180144698 180145212 -47379366 + L3 LINE CR1 576 1070 -507 1668 129 105 59 chr3 180145325 180145698 -47378880 + MLT1B LTR MaLR 1 390 0 387 258 168 7 chr3 180145729 180145884 -47378694 + MIR SINE MIR 13 192 -70 312 216 40 14 chr3 180145998 180146072 -47378506 - MLT1I LTR MaLR -225 184 109 200 269 0 0 chr3 180146932 180146984 -47377594 + (TG)n Simple_repeat Simple_repeat 1 52 0 910 191 34 6 chr3 180147442 180147620 -47376958 - MER5A DNA MER1_type 0 189 7 438 286 7 52 chr3 180147738 180147892 -47376686 + MIR SINE MIR 2 148 -114 2048 131 7 0 chr3 180148387 180148684 -47375894 + AluSx SINE Alu 1 299 -13 488 297 81 14 chr3 180148981 180149190 -47375388 - MIR SINE MIR -3 259 37 243 0 0 0 chr3 180150200 180150227 -47374351 + (CA)n Simple_repeat Simple_repeat 1 27 0 541 261 22 0 chr3 180150944 180151082 -47373496 + MER58A DNA MER1_type 1 141 0 259 151 75 0 chr3 180151082 180151134 -47373444 + MER58A DNA MER1_type 169 224 0 495 225 108 0 chr3 180151365 180151485 -47373093 + MER94 DNA DNA 2 134 0 320 307 65 55 chr3 180152254 180152510 -47372068 - MIR3 SINE MIR -1 261 3 1690 157 0 52 chr3 180152752 180153150 -47371428 + AluJb SINE Alu 1 382 0 850 275 66 55 chr3 180153201 180153689 -47370889 - MLT1J LTR MaLR -18 493 1 263 314 49 10 chr3 180153796 180153898 -47370680 - MIR SINE MIR -85 177 72 7052 51 18 0 chr3 180153951 180154924 -47369654 - L1PA7 LINE L1 0 6154 5177 2293 109 3 3 chr3 180155100 180155412 -47369166 - AluSp SINE Alu 0 313 2 231 276 115 0 chr3 180155455 180155542 -47369036 - MIR3 SINE MIR -8 200 104 548 157 14 14 chr3 180156553 180156635 -47367943 + GA-rich Low_complexity Low_complexity 1 85 -55 3588 134 41 24 chr3 180156635 180157267 -47367311 + LTR48B LTR ERV1 2 644 0 548 157 14 14 chr3 180157267 180157324 -47367254 + GA-rich Low_complexity Low_complexity 84 140 0 210 309 12 12 chr3 180158914 180158995 -47365583 - MIR3 SINE MIR -3 205 125 724 272 127 0 chr3 180158999 180159275 -47365303 - LTR33 LTR ERVL -3 518 208 344 163 12 0 chr3 180159276 180159362 -47365216 + (TG)n Simple_repeat Simple_repeat 1 87 0 369 294 85 17 chr3 180159384 180159561 -47365017 - LTR33 LTR ERVL -332 189 1 256 265 145 0 chr3 180159561 180159644 -47364934 - MIR SINE MIR -80 128 34 416 261 71 97 chr3 180159963 180160303 -47364275 + MARNA DNA Mariner 73 400 -186 1315 206 115 73 chr3 180160303 180160797 -47363781 - MLT2B2 LTR ERVL 0 515 1 416 261 71 97 chr3 180160797 180160908 -47363670 + MARNA DNA Mariner 400 512 -74 310 147 191 0 chr3 180161113 180161181 -47363397 - Tigger5 DNA MER2_type -1 2322 2242 * 399 188 0 12 chr3 180161171 180161251 -47363327 + Tigger5 DNA MER2_type 2242 2320 -3 2048 73 80 4 chr3 180161354 180161629 -47362949 - AluY SINE Alu -15 296 1 2248 101 20 0 chr3 180161866 180162164 -47362414 - AluSx SINE Alu -8 304 1 337 319 75 31 chr3 180163308 180163468 -47361110 + MIR SINE MIR 48 214 -48 285 315 114 19 chr3 180164207 180164435 -47360143 + MIR SINE MIR 7 255 -7 1685 43 9 0 chr3 180165077 180165288 -47359290 + L1PA4 LINE L1 5943 6155 0 446 292 161 29 chr3 180165914 180166298 -47358280 - LTR67 LTR ERVL -8 549 115 242 273 99 66 chr3 180168550 180168671 -47355907 - L2 LINE L2 -2 3270 3146 1808 209 44 15 chr3 180168677 180169131 -47355447 - MLT1C LTR MaLR 0 467 1 638 165 48 139 chr3 180169737 180169967 -47354611 + MER93b LTR ERV1 1 209 -164 654 205 81 0 chr3 180169970 180170131 -47354447 + MER2 DNA MER2_type 1 174 -171 254 257 114 0 chr3 180170216 180170286 -47354292 + MER2 DNA MER2_type 268 345 0 266 143 143 55 chr3 180170347 180170438 -47354140 + MER57A LTR ERV1 300 398 -5 6370 84 13 9 chr3 180171114 180172371 -47352207 + L1PA14 LINE L1 4897 6158 -3 2035 118 0 11 chr3 180172417 180172725 -47351853 + AluSx SINE Alu 1 305 0 1904 167 14 20 chr3 180173187 180173561 -47351017 + MLT1A1 LTR MaLR 2 365 0 862 258 5 0 chr3 180173792 180173978 -47350600 - MIR SINE MIR -5 257 71 181 287 11 35 chr3 180174160 180174247 -47350331 - MIR SINE MIR -117 145 61 754 254 53 4 chr3 180174360 180174624 -47349954 + MER113 DNA MER1_type? 89 365 -156 21 0 0 0 chr3 180174981 180175002 -47349576 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr3 180175152 180175173 -47349405 + (A)n Simple_repeat Simple_repeat 1 21 0 312 222 0 0 chr3 180175979 180176051 -47348527 + (TG)n Simple_repeat Simple_repeat 2 73 0 332 283 95 35 chr3 180176191 180176347 -47348231 + MIR3 SINE MIR 42 187 -25 979 178 0 0 chr3 180177942 180178094 -47346484 + AluSg/x SINE Alu 138 289 -23 1349 142 0 20 chr3 180178111 180178315 -47346263 + AluSg/x SINE Alu 83 282 -30 1153 100 0 12 chr3 180178322 180178492 -47346086 + MLT1C LTR MaLR 300 467 0 264 349 36 0 chr3 180178527 180178610 -47345968 - MIR SINE MIR -157 105 20 302 295 0 62 chr3 180178770 180178856 -47345722 + L1MC4 LINE L1 6614 6693 -1349 246 32 0 0 chr3 180178856 180178887 -47345691 + (GA)n Simple_repeat Simple_repeat 2 32 0 302 295 0 62 chr3 180178887 180178912 -47345666 + L1MC4 LINE L1 6693 6718 -1324 2163 115 0 0 chr3 180181150 180181446 -47343132 - AluYa5 SINE Alu -15 296 1 192 231 0 26 chr3 180181713 180181752 -47342826 - L2 LINE L2 -25 3247 3210 2301 143 48 33 chr3 180181798 180182258 -47342320 + MLT1C LTR MaLR 1 467 0 264 349 36 0 chr3 180182293 180182376 -47342202 - MIR SINE MIR -157 105 20 406 167 0 12 chr3 180184382 180184466 -47340112 - L1MB8 LINE L1 -1 6177 6095 4213 165 26 48 chr3 180184474 180185581 -47338997 - L1MB4 LINE L1 0 6180 5100 435 308 12 0 chr3 180186034 180186220 -47338358 - L1ME LINE L1 -381 5781 5594 1269 130 0 0 chr3 180189561 180189745 -47334833 + AluSq SINE Alu 130 313 0 2180 184 34 83 chr3 180189754 180190113 -47334465 - L1MC4 LINE L1 -1 8041 7731 1184 195 121 18 chr3 180190113 180190452 -47334126 + MLT1A2 LTR MaLR 1 374 0 2180 184 34 83 chr3 180190452 180190778 -47333800 - L1MC4 LINE L1 -311 7731 7390 22 0 0 0 chr3 180191097 180191119 -47333459 + AT_rich Low_complexity Low_complexity 1 22 0 243 241 86 0 chr3 180191975 180192033 -47332545 - MIR SINE MIR -69 139 77 511 272 136 0 chr3 180192036 180192227 -47332351 - MIR SINE MIR 0 262 46 384 303 33 16 chr3 180192435 180192557 -47332021 + L2 LINE L2 3138 3261 -11 261 186 23 23 chr3 180192559 180192645 -47331933 + GA-rich Low_complexity Low_complexity 3 88 0 297 0 0 0 chr3 180192742 180192775 -47331803 + (CA)n Simple_repeat Simple_repeat 2 34 0 263 288 8 8 chr3 180192804 180192936 -47331642 + L1ME LINE L1 5726 5857 -264 1551 241 21 11 chr3 180193144 180193580 -47330998 + L1MEc LINE L1 51 490 -5906 850 116 8 39 chr3 180193710 180193839 -47330739 - AluSq/x SINE Alu -187 125 1 1808 152 55 33 chr3 180193839 180194281 -47330297 - MER39 LTR ERV1 -103 604 108 714 249 33 0 chr3 180194284 180194529 -47330049 + L1MEc LINE L1 914 1166 -5230 204 40 0 0 chr3 180195414 180195439 -47329139 + (T)n Simple_repeat Simple_repeat 1 25 0 21 0 0 0 chr3 180198076 180198097 -47326481 + AT_rich Low_complexity Low_complexity 1 21 0 213 324 0 28 chr3 180198945 180199016 -47325562 + MIR SINE MIR 20 88 -174 500 298 57 0 chr3 180200613 180200737 -47323841 + L2 LINE L2 3140 3270 -2 2260 128 0 6 chr3 180200908 180201221 -47323357 - AluSx SINE Alu -1 311 1 500 251 80 12 chr3 180202437 180202600 -47321978 - MIR3 SINE MIR -5 203 30 26 0 0 0 chr3 180202659 180202685 -47321893 + AT_rich Low_complexity Low_complexity 1 26 0 311 333 93 7 chr3 180202738 180202888 -47321690 - MIR SINE MIR -56 206 44 286 305 52 13 chr3 180203046 180203200 -47321378 + MLT2C1 LTR ERVL 43 202 -195 * 2127 210 23 52 chr3 180203084 180203646 -47320932 + MLT1E2 LTR MaLR 79 624 -2 406 58 43 14 chr3 180204635 180204704 -47319874 - MADE1 DNA Mariner 0 80 10 1845 153 12 6 chr3 180204853 180205186 -47319392 + MER47A DNA MER2_type 1 335 -31 186 182 0 0 chr3 180205422 180205455 -47319123 - L2 LINE L2 -985 2329 2297 1817 196 21 9 chr3 180205457 180205840 -47318738 + MLT2D LTR ERVL 1 535 -19 268 216 27 0 chr3 180205848 180205922 -47318656 + (TA)n Simple_repeat Simple_repeat 1 76 0 270 92 0 92 chr3 180205925 180205990 -47318588 + MLT2B1 LTR ERVL 455 513 -7 863 291 172 39 chr3 180205991 180206614 -47317964 - L2 LINE L2 -1015 2299 1594 2385 71 0 3 chr3 180206647 180206943 -47317635 + AluY SINE Alu 1 295 -16 351 0 0 0 chr3 180207863 180207902 -47316676 + (TA)n Simple_repeat Simple_repeat 2 40 0 29 108 0 0 chr3 180207923 180208043 -47316535 + AT_rich Low_complexity Low_complexity 1 120 0 21 0 0 0 chr3 180208329 180208350 -47316228 + AT_rich Low_complexity Low_complexity 1 21 0 678 269 37 32 chr3 180208414 180208630 -47315948 - MIR SINE MIR 0 262 46 408 296 174 43 chr3 180208920 180209173 -47315405 - L2 LINE L2 -16 3297 3012 286 241 63 13 chr3 180209229 180209308 -47315270 - L2 LINE L2 0 3313 3231 1644 160 0 61 chr3 180209963 180210275 -47314303 - AluJo SINE Alu -17 295 3 366 219 0 0 chr3 180210278 180210342 -47314236 - AluJ/FLAM SINE Alu -238 64 1 2323 105 10 0 chr3 180210369 180210675 -47313903 + AluSc SINE Alu 1 309 0 236 100 25 0 chr3 180210677 180210717 -47313861 + (GGAAA)n Simple_repeat Simple_repeat 4 44 0 483 255 27 34 chr3 180214580 180214729 -47309849 + MIR3 SINE MIR 50 197 -11 291 327 18 9 chr3 180215492 180215602 -47308976 + L2 LINE L2 3158 3268 -4 2140 132 0 0 chr3 180215604 180215900 -47308678 + AluSx SINE Alu 1 296 -16 925 311 186 14 chr3 180216409 180217088 -47307490 - L2 LINE L2 -28 3285 2487 220 146 24 0 chr3 180218385 180218426 -47306152 + (TA)n Simple_repeat Simple_repeat 2 43 0 766 254 41 64 chr3 180219816 180220158 -47304420 - MER102b DNA MER1_type -1 340 7 5173 164 22 7 chr3 180220414 180221953 -47302625 + L1PB2 LINE L1 4125 5687 -464 2939 81 7 2 chr3 180221959 180222378 -47302200 + L1PB2 LINE L1 5724 6144 -7 25802 123 7 16 chr3 180222593 180227330 -47297248 - L1P3 LINE L1 -982 5479 764 258 261 65 33 chr3 180227783 180227875 -47296703 - MIR SINE MIR -50 212 118 771 273 39 7 chr3 180228974 180229296 -47295282 + L1MCa LINE L1 1511 2030 -4577 220 337 79 0 chr3 180229319 180229408 -47295170 - MIR SINE MIR -14 248 153 472 270 57 111 chr3 180229882 180230081 -47294497 + HAL1 LINE L1 826 1003 -1504 2494 67 0 0 chr3 180230081 180230380 -47294198 + AluY SINE Alu 2 300 -11 472 270 57 111 chr3 180230380 180230495 -47294083 + HAL1 LINE L1 1003 1123 -1384 26 30 0 0 chr3 180231460 180231493 -47293085 + AT_rich Low_complexity Low_complexity 1 33 0 352 248 23 30 chr3 180231740 180231873 -47292705 - MER103 DNA DNA -34 132 1 208 222 0 0 chr3 180231883 180231919 -47292659 + (TCCA)n Simple_repeat Simple_repeat 4 39 0 2619 132 29 2 chr3 180234604 180235020 -47289558 - MSTA LTR MaLR 0 428 2 289 323 62 81 chr3 180235069 180235230 -47289348 - MIR3 SINE MIR -48 160 3 772 226 11 6 chr3 180235345 180235522 -47289056 + MER5B DNA MER1_type 1 178 0 251 178 22 0 chr3 180235634 180235679 -47288899 + L2 LINE L2 3257 3302 -11 181 395 25 12 chr3 180236148 180236229 -47288349 + MIR SINE MIR 20 101 -107 412 269 94 64 chr3 180236551 180236849 -47287729 - MLT1I LTR MaLR -5 404 98 267 290 112 71 chr3 180237030 180237254 -47287324 - L2 LINE L2 -168 3104 2872 224 309 107 60 chr3 180237272 180237440 -47287138 + L2 LINE L2 2937 3112 -160 400 245 38 0 chr3 180237590 180237696 -47286882 + MER94 DNA DNA 8 117 -17 441 296 79 21 chr3 180237729 180237918 -47286660 - L2 LINE L2 -530 2784 2585 210 208 0 0 chr3 180237918 180237971 -47286607 + (CA)n Simple_repeat Simple_repeat 1 53 0 212 350 22 0 chr3 180239227 180239364 -47285214 - MIR SINE MIR -5 257 118 31 58 0 0 chr3 180239493 180239545 -47285033 + AT_rich Low_complexity Low_complexity 1 52 0 239 283 94 97 chr3 180239661 180240043 -47284535 - MLT1L LTR MaLR -232 383 3 287 264 66 46 chr3 180240505 180240755 -47283823 + MLT1L LTR MaLR 256 508 -3 191 357 89 0 chr3 180241025 180241137 -47283441 + MIR SINE MIR 97 218 -44 553 270 148 7 chr3 180241142 180241420 -47283158 - L2 LINE L2 -2 3311 2995 349 305 109 8 chr3 180241480 180241608 -47282970 - MIR SINE MIR -71 191 51 445 283 183 51 chr3 180242090 180242594 -47281984 - L2 LINE L2 -1 3312 2742 268 205 39 39 chr3 180243719 180243797 -47280781 - MIR3 SINE MIR -39 169 92 372 271 127 26 chr3 180244585 180244814 -47279764 + L1MC/D LINE L1 4983 5234 -912 650 293 91 35 chr3 180245053 180245459 -47279119 + L1MC/D LINE L1 5372 5800 -2008 7449 36 30 5 chr3 180245659 180247258 -47277320 - L1PA4 LINE L1 -4 6151 4530 7495 25 1 9 chr3 180247522 180248463 -47276115 + L1PA2 LINE L1 5221 6154 -1 522 103 0 0 chr3 180248826 180248904 -47275674 + (TG)n Simple_repeat Simple_repeat 2 79 0 1282 217 40 0 chr3 180299866 180300166 -47224412 - L1M4 LINE L1 -1360 4786 4475 5703 105 26 11 chr3 180300173 180301381 -47223197 - L1PB1 LINE L1 -2 6149 4932 189 0 0 0 chr3 180301545 180301566 -47223012 + (T)n Simple_repeat Simple_repeat 1 21 0 1048 299 72 0 chr3 180301842 180302163 -47222415 - L2 LINE L2 -598 2716 2373 285 266 26 18 chr3 180302362 180302475 -47222103 + CT-rich Low_complexity Low_complexity 3 116 0 357 273 10 10 chr3 180302475 180302574 -47222004 - MLT1J2 LTR MaLR -284 166 68 352 244 169 31 chr3 180302575 180302735 -47221843 - L1M4 LINE L1 -768 5378 5197 1685 130 87 4 chr3 180303127 180303403 -47221175 - AluJb SINE Alu -13 299 1 323 352 110 22 chr3 180304367 180304929 -47219649 + L2 LINE L2 2454 3059 -213 28 0 0 0 chr3 180305040 180305068 -47219510 + AT_rich Low_complexity Low_complexity 1 28 0 194 195 0 49 chr3 180305119 180305160 -47219418 + L2 LINE L2 3263 3301 -12 592 245 42 42 chr3 180306447 180306663 -47217915 + L1MA9 LINE L1 6058 6273 -39 22 0 0 0 chr3 180306751 180306773 -47217805 + AT_rich Low_complexity Low_complexity 1 22 0 2254 51 34 10 chr3 180307321 180307615 -47216963 + AluY SINE Alu 1 301 -10 254 297 109 78 chr3 180307615 180307743 -47216835 - L2 LINE L2 -2 3311 3180 21 0 0 0 chr3 180307748 180307769 -47216809 + AT_rich Low_complexity Low_complexity 1 21 0 518 293 44 78 chr3 180307769 180308063 -47216515 - L2 LINE L2 -989 2325 2042 690 246 80 57 chr3 180308169 180308587 -47215991 + MLT1G LTR MaLR 141 588 -2 783 71 0 0 chr3 180309493 180309591 -47214987 + L1P LINE L1 1 98 -6048 * 1357 33 0 21 chr3 180309589 180309920 -47214658 + L1P LINE L1 623 1074 -5072 1042 212 57 79 chr3 180310606 180310974 -47213604 - MLT1A2 LTR MaLR -13 361 2 195 191 147 29 chr3 180311538 180311606 -47212972 - MIR SINE MIR -110 152 77 530 188 246 0 chr3 180311848 180311986 -47212592 - MER5A DNA MER1_type 0 189 18 3931 143 28 27 chr3 180312395 180312897 -47211681 - L1MA4 LINE L1 -4 6478 5978 237 33 0 0 chr3 180312897 180312927 -47211651 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1569 132 39 39 chr3 180312936 180313194 -47211384 - AluJo SINE Alu -54 258 1 3931 143 28 27 chr3 180313194 180313432 -47211146 - L1MA4 LINE L1 -511 5971 5727 12516 184 28 37 chr3 180313432 180318593 -47205985 - L1MA4 LINE L1 -1201 5127 10 205 316 13 0 chr3 180318598 180318677 -47205901 - MIR SINE MIR -6 256 177 540 0 0 0 chr3 180319037 180319097 -47205481 + (TA)n Simple_repeat Simple_repeat 2 61 0 3126 159 77 156 chr3 180319353 180320330 -47204248 + MER21A LTR ERV1 1 900 -31 396 289 35 0 chr3 180320358 180320500 -47204078 - Charlie8 DNA MER1_type -2183 234 88 7733 215 30 19 chr3 180322200 180325182 -47199396 + L1MB5 LINE L1 3159 6174 0 2695 220 67 33 chr3 180325185 180325730 -47198848 - L1ME1 LINE L1 -7 6228 5703 2009 139 3 13 chr3 180325730 180326033 -47198545 - AluSx SINE Alu -12 300 1 2695 220 67 33 chr3 180326033 180326666 -47197912 - L1ME1 LINE L1 -532 5703 5020 384 231 45 70 chr3 180326700 180326856 -47197722 - L1ME1 LINE L1 -4918 1478 1327 1138 240 29 26 chr3 180326856 180327206 -47197372 - L1M4 LINE L1 -1750 4396 4046 * 1997 281 44 8 chr3 180327195 180327790 -47196788 - L1ME1 LINE L1 -5745 651 36 1456 231 21 67 chr3 180327783 180328406 -47196172 - L1MEc LINE L1 -3299 2916 2323 * 2326 122 8 6 chr3 180328421 180328773 -47195805 - THE1A LTR MaLR 0 355 3 11434 95 10 4 chr3 180328775 180329848 -47194730 - THE1A-int LTR MaLR 0 1580 494 2281 95 0 19 chr3 180329848 180330163 -47194415 - AluSq SINE Alu -4 309 1 11434 95 10 4 chr3 180330163 180330658 -47193920 - THE1A-int LTR MaLR -1086 494 3 2375 113 8 8 chr3 180330660 180331015 -47193563 - THE1A LTR MaLR 0 355 1 754 273 79 71 chr3 180331015 180331648 -47192930 - L1MEc LINE L1 -5410 986 349 1541 164 24 3 chr3 180331689 180331987 -47192591 - L1MB1 LINE L1 0 6168 5865 4504 241 61 22 chr3 180331998 180334249 -47190329 - L1 LINE L1 -2550 5015 2707 26 30 0 0 chr3 180334257 180334290 -47190288 + AT_rich Low_complexity Low_complexity 1 33 0 1496 122 0 0 chr3 180334300 180334529 -47190049 - L1MA2 LINE L1 -15 6289 6061 3033 215 22 11 chr3 180334529 180335270 -47189308 - L1M4 LINE L1 -936 5210 4462 23 33 0 0 chr3 180335286 180335316 -47189262 + AT_rich Low_complexity Low_complexity 1 30 0 24 77 0 0 chr3 180335661 180335713 -47188865 + AT_rich Low_complexity Low_complexity 1 52 0 225 309 18 0 chr3 180336415 180336470 -47188108 + MIR SINE MIR 20 75 -133 268 303 141 0 chr3 180336545 180336644 -47187934 - MIR SINE MIR -63 145 33 565 187 9 0 chr3 180337391 180337498 -47187080 + MER53 DNA DNA 1 108 -81 208 234 213 32 chr3 180338440 180338534 -47186044 - MIR SINE MIR -1 261 151 210 179 205 39 chr3 180338933 180339011 -47185567 - MIR SINE MIR -63 145 55 222 295 274 11 chr3 180339079 180339174 -47185404 + L2 LINE L2 3153 3272 0 433 272 133 39 chr3 180343173 180343262 -47181316 + L1ME4a LINE L1 5273 5352 -769 1883 128 3 49 chr3 180343262 180343567 -47181011 + AluSx SINE Alu 9 299 -13 433 272 133 39 chr3 180343567 180343859 -47180719 + L1ME4a LINE L1 5352 5690 -431 366 254 25 17 chr3 180343912 180344030 -47180548 + L1ME4a LINE L1 5789 5907 -214 231 252 163 14 chr3 180344032 180344179 -47180399 + L1ME4a LINE L1 5947 6115 -6 204 40 0 0 chr3 180344543 180344568 -47180010 + (TA)n Simple_repeat Simple_repeat 1 25 0 27 0 0 0 chr3 180344784 180344811 -47179767 + AT_rich Low_complexity Low_complexity 1 27 0 1162 66 102 0 chr3 180345070 180345237 -47179341 + MLT2A1 LTR ERVL 1 184 -260 1907 181 82 32 chr3 180345237 180345701 -47178877 - LTR2B LTR ERV1 0 490 4 41514 190 5 11 chr3 180345704 180353557 -47171021 - HERVE LTR ERV1 -9 7804 1 1872 187 62 18 chr3 180353557 180353995 -47170583 - LTR2B LTR ERV1 0 490 34 1499 104 14 7 chr3 180354015 180354248 -47170330 + MLT2A1 LTR ERVL 178 475 -40 48 43 0 0 chr3 180354248 180354317 -47170261 + AT_rich Low_complexity Low_complexity 1 69 0 390 36 0 18 chr3 180354337 180354393 -47170185 + MLT2A1 LTR ERVL 390 444 0 305 132 132 0 chr3 180355026 180355094 -47169484 + L1PB4 LINE L1 6075 6151 -5 357 109 50 40 chr3 180357164 180357265 -47167313 + CT-rich Low_complexity Low_complexity 4 105 0 1806 141 53 27 chr3 180357268 180357567 -47167011 - AluSx SINE Alu -5 307 1 220 267 0 0 chr3 180358626 180358671 -47165907 - MIR SINE MIR -169 93 49 367 306 22 52 chr3 180358821 180358955 -47165623 - MIR SINE MIR -101 161 32 366 305 11 0 chr3 180359086 180359181 -47165397 - L2 LINE L2 0 3313 3218 604 108 0 0 chr3 180359267 180359350 -47165228 + AluY SINE Alu 214 296 -15 1880 118 18 0 chr3 180360013 180360327 -47164251 + AluSx SINE Alu 1 319 0 239 162 0 0 chr3 180360329 180360366 -47164212 - L2 LINE L2 -16 3256 3220 225 0 0 0 chr3 180361748 180361773 -47162805 + (CG)n Simple_repeat Simple_repeat 2 26 0 * 261 0 0 0 chr3 180361772 180361801 -47162777 + (CA)n Simple_repeat Simple_repeat 1 29 0 1068 181 148 111 chr3 180361834 180362319 -47162259 + MLT1D LTR MaLR 1 503 -2 260 296 112 32 chr3 180362366 180362491 -47162087 + MIR SINE MIR 49 183 -79 252 167 0 74 chr3 180362613 180362667 -47161911 + MIR SINE MIR 204 253 -9 319 303 61 3 chr3 180363233 180363379 -47161199 - MER20B DNA MER1_type -17 202 46 286 315 0 0 chr3 180363598 180363671 -47160907 + MIR SINE MIR 86 158 -104 343 286 77 58 chr3 180363740 180364001 -47160577 + MLT1J1 LTR MaLR 63 329 -121 181 338 0 0 chr3 180364158 180364229 -47160349 + MIR SINE MIR 188 258 -4 257 287 188 0 chr3 180364354 180364455 -47160123 - L2 LINE L2 -4 3268 3149 1720 149 56 7 chr3 180365692 180365980 -47158598 + AluSx SINE Alu 1 302 -10 638 260 54 99 chr3 180366392 180366765 -47157813 - MLT1J LTR MaLR -33 478 123 509 253 50 73 chr3 180366866 180367167 -47157411 - L1ME3A LINE L1 -266 5904 5611 7208 112 52 2 chr3 180367323 180368589 -47155989 + L1PBa LINE L1 1643 2971 -3892 1169 312 106 42 chr3 180370035 180370849 -47153729 - L2 LINE L2 -358 2956 2091 477 247 31 114 chr3 180371877 180372104 -47152474 + MIR SINE MIR 18 225 -37 308 314 153 15 chr3 180374171 180374445 -47150133 + L2 LINE L2 2652 2963 -351 243 0 0 0 chr3 180374628 180374655 -47149923 + (CTAG)n Simple_repeat Simple_repeat 2 28 0 311 265 25 74 chr3 180374830 180374992 -47149586 - MIR SINE MIR -5 257 104 965 244 0 5 chr3 180375002 180375207 -47149371 + MER58A DNA MER1_type 1 204 -20 546 43 0 0 chr3 180375854 180375923 -47148655 + (TG)n Simple_repeat Simple_repeat 1 69 0 381 22 0 0 chr3 180377303 180377349 -47147229 + (TG)n Simple_repeat Simple_repeat 2 47 0 240 250 22 11 chr3 180377611 180377703 -47146875 - MER113 DNA MER1_type? -423 98 6 690 322 73 3 chr3 180378312 180378697 -47145881 - L1ME3A LINE L1 -220 5950 5539 404 272 130 11 chr3 180378697 180378881 -47145697 + L1ME3A LINE L1 4384 4589 -1557 279 79 0 0 chr3 180378902 180378940 -47145638 + (TTCCC)n Simple_repeat Simple_repeat 4 41 0 1493 198 0 14 chr3 180378944 180379222 -47145356 - AluJb SINE Alu -38 274 1 701 281 78 24 chr3 180379251 180380477 -47144101 + L1ME3A LINE L1 4615 5960 -206 211 180 90 0 chr3 180380656 180380745 -47143833 + (TA)n Simple_repeat Simple_repeat 2 98 0 21 0 0 0 chr3 180380757 180380778 -47143800 + AT_rich Low_complexity Low_complexity 1 21 0 1746 117 53 8 chr3 180380977 180381241 -47143337 + AluSx SINE Alu 1 276 -36 222 37 0 0 chr3 180381242 180381269 -47143309 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 926 275 44 35 chr3 180382125 180382558 -47142020 - L1ME3A LINE L1 -232 5938 5502 2060 100 7 33 chr3 180382565 180382865 -47141713 - AluSg1 SINE Alu -17 292 1 24 32 0 0 chr3 180383999 180384030 -47140548 + AT_rich Low_complexity Low_complexity 1 31 0 558 303 58 40 chr3 180384506 180384758 -47139820 + L1ME LINE L1 663 909 -5392 2207 106 0 0 chr3 180384758 180385042 -47139536 + AluSg SINE Alu 1 284 -26 558 303 58 40 chr3 180385042 180385059 -47139519 + L1ME LINE L1 909 924 -5377 294 29 0 0 chr3 180385059 180385094 -47139484 + (TTA)n Simple_repeat Simple_repeat 3 37 0 558 303 58 40 chr3 180385094 180385562 -47139016 + L1ME LINE L1 924 1432 -4869 320 274 17 17 chr3 180385569 180385686 -47138892 - L1MCa LINE L1 -4346 2080 1964 1003 260 102 45 chr3 180385731 180386126 -47138452 + L1ME LINE L1 2113 2484 -3731 1915 152 10 7 chr3 180386126 180386429 -47138149 + AluJo SINE Alu 5 308 -4 1003 260 102 45 chr3 180386429 180387125 -47137453 + L1ME LINE L1 2484 3225 -2990 760 293 81 29 chr3 180387394 180388323 -47136255 + L1ME LINE L1 4223 5199 -1016 413 273 31 12 chr3 180388410 180388571 -47136007 + L1MC4a LINE L1 5765 5928 -1880 1473 194 24 31 chr3 180388582 180388876 -47135702 + AluJb SINE Alu 1 292 -20 371 326 93 29 chr3 180389185 180389602 -47134976 + L1ME LINE L1 5326 5769 -462 749 270 20 44 chr3 180389617 180389865 -47134713 - MIR SINE MIR -5 257 16 237 213 13 27 chr3 180389947 180390022 -47134556 + L1ME LINE L1 5830 5903 -330 * 244 109 40 19 chr3 180390012 180390074 -47134504 + (TCTA)n Simple_repeat Simple_repeat 1 63 0 33 56 0 0 chr3 180390114 180390168 -47134410 + AT_rich Low_complexity Low_complexity 1 54 0 23 68 0 0 chr3 180390415 180390459 -47134119 + AT_rich Low_complexity Low_complexity 1 44 0 710 120 0 8 chr3 180390580 180390697 -47133881 + (TCCC)n Simple_repeat Simple_repeat 1 116 0 737 117 0 8 chr3 180391242 180391362 -47133216 + (TCCC)n Simple_repeat Simple_repeat 1 119 0 358 275 96 44 chr3 180391644 180391873 -47132705 + L1ME4a LINE L1 5712 5952 -169 35 0 0 0 chr3 180391918 180391953 -47132625 + AT_rich Low_complexity Low_complexity 1 35 0 510 306 53 1 chr3 180392533 180392717 -47131861 - L1MC/D LINE L1 -478 5643 5468 * 2872 220 57 37 chr3 180392713 180393254 -47131324 - L1ME1 LINE L1 -5 6161 5632 1530 122 8 13 chr3 180393254 180393491 -47131087 - MER46A DNA MER2_type 0 236 1 2872 220 57 37 chr3 180393491 180393619 -47130959 - L1ME1 LINE L1 -534 5632 5508 6738 59 17 0 chr3 180393619 180394819 -47129759 - L1PA8 LINE L1 -3 6169 4978 2872 220 57 37 chr3 180394819 180395520 -47129058 - L1ME1 LINE L1 -658 5508 4763 1146 282 44 7 chr3 180395515 180395947 -47128631 - L1ME1 LINE L1 -2473 3673 3226 * 362 253 64 55 chr3 180396467 180396669 -47127909 - LTR67 LTR ERVL -3 554 351 1348 268 39 76 chr3 180396849 180397661 -47126917 - L2 LINE L2 0 3313 2522 432 312 68 8 chr3 180397706 180397943 -47126635 - L2 LINE L2 -470 2844 2594 2400 247 40 14 chr3 180398002 180398573 -47126005 - MLT1E LTR MaLR 0 593 8 210 308 57 50 chr3 180398614 180398773 -47125805 - L2 LINE L2 -815 2499 2340 455 134 0 0 chr3 180398862 180398929 -47125649 + AluS SINE Alu 1 67 -246 428 299 118 32 chr3 180399958 180400422 -47124156 - MLT1K LTR MaLR -7 581 10 511 301 113 4 chr3 180403824 180404053 -47120525 - MIR SINE MIR -1 261 8 394 248 200 14 chr3 180405713 180405858 -47118720 + MIR SINE MIR 20 191 -71 233 271 0 29 chr3 180405909 180405979 -47118599 + (TATATG)n Simple_repeat Simple_repeat 6 73 0 348 298 207 16 chr3 180406271 180406459 -47118119 + MIR SINE MIR 35 258 -4 334 312 37 63 chr3 180406456 180406645 -47117933 - MIR SINE MIR -32 230 47 * 703 260 113 17 chr3 180407706 180407937 -47116641 + MIR SINE MIR 2 254 -8 208 254 0 36 chr3 180408452 180408507 -47116071 + MIR3 SINE MIR 151 203 -5 399 306 34 29 chr3 180412113 180412322 -47112256 - L3 LINE CR1 -166 1411 1202 326 299 58 26 chr3 180413099 180413253 -47111325 - L3 LINE CR1 -781 796 638 851 287 68 65 chr3 180413844 180414426 -47110152 - L1ME3A LINE L1 -293 5860 5273 296 309 72 28 chr3 180414548 180415020 -47109558 - L1ME3A LINE L1 -1396 4733 4241 1129 243 91 58 chr3 180415039 180415467 -47109111 - L2 LINE L2 -5 3308 2867 * 2627 229 132 91 chr3 180415463 180416680 -47107898 - L2 LINE L2 -338 2976 1711 1654 275 120 41 chr3 180416729 180418091 -47106487 - L1ME3A LINE L1 -1907 4222 2969 779 259 52 16 chr3 180418091 180418342 -47106236 - MIR SINE MIR -1 261 2 2086 112 35 0 chr3 180418346 180418631 -47105947 - AluSg SINE Alu -15 295 1 1654 275 120 41 chr3 180418631 180419003 -47105575 - L1ME3A LINE L1 -3162 2967 2345 480 257 87 59 chr3 180419013 180419301 -47105277 - L1ME3A LINE L1 -3988 2322 2027 2335 245 60 27 chr3 180419394 180420097 -47104481 + HsTC2c DNA MER2_type 4 729 0 818 226 7 0 chr3 180420383 180420538 -47104040 + FAM SINE Alu 3 158 -17 479 315 116 5 chr3 180420551 180420929 -47103649 - L1ME3A LINE L1 -4689 1621 1202 364 267 10 40 chr3 180420983 180421084 -47103494 - L2 LINE L2 -7 3306 3209 765 302 77 29 chr3 180421105 180421652 -47102926 - L1ME3A LINE L1 -5016 1103 531 285 29 0 0 chr3 180421692 180421726 -47102852 + (TG)n Simple_repeat Simple_repeat 1 34 0 3575 193 17 95 chr3 180421891 180422323 -47102255 + L1PA16 LINE L1 4186 4650 -1496 1931 146 10 10 chr3 180422323 180422624 -47101954 + AluSx SINE Alu 1 301 -11 3575 193 17 95 chr3 180422624 180423257 -47101321 + L1PA16 LINE L1 4650 5168 -978 1420 162 15 11 chr3 180423253 180423380 -47101198 - L1 LINE L1 -1355 4791 4666 * 297 0 0 0 chr3 180423380 180423413 -47101165 + (TG)n Simple_repeat Simple_repeat 2 34 0 1420 162 15 11 chr3 180423413 180423556 -47101022 - L1 LINE L1 -1480 4666 4520 5361 129 21 12 chr3 180423560 180424554 -47100024 + L1PA16 LINE L1 5164 6165 -1 497 244 23 17 chr3 180424556 180424728 -47099850 + L1ME LINE L1 1738 1910 -4516 748 92 28 14 chr3 180424739 180424881 -47099697 + (GAAA)n Simple_repeat Simple_repeat 4 147 0 854 254 44 0 chr3 180424951 180425199 -47099379 - MIR SINE MIR 0 262 4 1382 279 68 15 chr3 180426430 180426839 -47097739 - LTR16A LTR ERVL -13 437 7 437 299 48 18 chr3 180426994 180427276 -47097302 - MERVL LTR ERVL -1205 4280 3994 2031 200 55 25 chr3 180427333 180427823 -47096755 + MLT1D LTR MaLR 1 505 0 306 306 26 47 chr3 180427827 180428020 -47096558 - MERVL LTR ERVL -201 5284 5096 1011 344 77 23 chr3 180428148 180429331 -47095247 - MERVL LTR ERVL -908 4746 3458 1689 151 16 43 chr3 180429555 180429860 -47094718 + AluJo SINE Alu 1 297 -15 24 32 0 0 chr3 180430386 180430417 -47094161 + AT_rich Low_complexity Low_complexity 1 31 0 441 303 25 22 chr3 180430790 180431064 -47093514 + L1ME LINE L1 3998 4272 -2154 21 0 0 0 chr3 180431069 180431090 -47093488 + AT_rich Low_complexity Low_complexity 1 21 0 2193 110 7 0 chr3 180431481 180431780 -47092798 + AluY SINE Alu 6 306 -5 2935 118 11 0 chr3 180431893 180432333 -47092245 + L1PA13 LINE L1 5717 6161 -2 782 319 40 11 chr3 180433177 180433553 -47091025 + L1ME LINE L1 5626 6012 -389 221 398 48 0 chr3 180434124 180434227 -47090351 + L2 LINE L2 3127 3234 -38 262 239 22 87 chr3 180435051 180435143 -47089435 + MIR SINE MIR 58 143 -65 569 245 46 0 chr3 180435218 180435369 -47089209 - MER103 DNA DNA -7 159 2 276 99 0 183 chr3 180435880 180435951 -47088627 - MER33 DNA MER1_type 0 363 306 435 151 32 0 chr3 180435990 180436083 -47088495 + L1MB3 LINE L1 6087 6182 -1 791 187 100 12 chr3 180436099 180436227 -47088351 - MER33 DNA MER1_type -2312 273 158 1783 87 0 9 chr3 180436227 180436501 -47088077 - AluSg SINE Alu 0 326 55 791 187 100 12 chr3 180436501 180436612 -47087966 - MER33 DNA MER1_type -2427 158 12 213 350 32 64 chr3 180436612 180436769 -47087809 - L2 LINE L2 -203 3069 2918 339 25 0 0 chr3 180437697 180437737 -47086841 + (CA)n Simple_repeat Simple_repeat 2 41 0 207 259 36 101 chr3 180437973 180438112 -47086466 + MIR3 SINE MIR 76 205 -3 445 325 56 43 chr3 180438129 180438363 -47086215 + MIR SINE MIR 20 256 -6 544 272 37 37 chr3 180439277 180439439 -47085139 + MIR SINE MIR 57 218 -44 473 204 0 0 chr3 180439579 180439667 -47084911 + L2 LINE L2 3226 3313 0 328 306 156 38 chr3 180441694 180442067 -47082511 - MLT1K LTR MaLR -71 517 101 371 248 106 21 chr3 180442622 180442763 -47081815 - L1M LINE L1 -756 5408 5256 39 22 0 0 chr3 180442763 180442809 -47081769 + AT_rich Low_complexity Low_complexity 1 46 0 526 274 70 4 chr3 180442844 180443103 -47081475 - L1M4 LINE L1 -913 5233 4958 442 332 29 52 chr3 180443883 180444253 -47080325 + L2 LINE L2 2745 3107 -165 224 59 29 0 chr3 180444419 180444453 -47080125 + (TGAA)n Simple_repeat Simple_repeat 1 35 0 5591 138 20 23 chr3 180445871 180446400 -47078178 + L1PA16 LINE L1 4801 5330 -836 11440 165 82 1 chr3 180446400 180449415 -47075163 + L1PA13 LINE L1 3028 6149 -14 5591 138 20 23 chr3 180449415 180450237 -47074341 + L1PA16 LINE L1 5330 6159 -7 402 286 16 8 chr3 180451341 180451467 -47073111 - MIR SINE MIR -1 261 135 459 350 20 24 chr3 180451773 180452019 -47072559 - MLT1K LTR MaLR -342 246 2 836 331 84 57 chr3 180452278 180453273 -47071305 - L3 LINE CR1 -111 1466 445 405 300 9 69 chr3 180453544 180453894 -47070684 + L1M4 LINE L1 3439 3767 -2379 403 250 129 16 chr3 180453906 180454030 -47070548 - MIR SINE MIR 0 262 125 193 71 0 48 chr3 180454250 180454292 -47070286 + (TA)n Simple_repeat Simple_repeat 1 40 0 438 283 104 60 chr3 180454292 180454490 -47070088 + L1M4 LINE L1 4043 4231 -1915 1992 156 3 7 chr3 180454490 180454798 -47069780 + AluJo SINE Alu 1 307 -5 438 283 104 60 chr3 180454798 180455448 -47069130 + L1M4 LINE L1 4231 4928 -1218 302 243 27 54 chr3 180455536 180455684 -47068894 + L1M4 LINE L1 3950 4093 -2053 2234 122 11 28 chr3 180455690 180456051 -47068527 - THE1A LTR MaLR 0 355 1 243 0 0 0 chr3 180456853 180456880 -47067698 + (CAT)n Simple_repeat Simple_repeat 2 28 0 2328 110 0 0 chr3 180456952 180457252 -47067326 + AluSx SINE Alu 1 300 -12 265 324 97 51 chr3 180457865 180458041 -47066537 - MIR SINE MIR -76 186 3 259 205 39 13 chr3 180458500 180458516 -47066062 + (CATATA)n Simple_repeat Simple_repeat 2 16 -65 636 179 18 0 chr3 180458516 180458628 -47065950 + MER81 DNA DNA 1 114 0 259 205 39 13 chr3 180458628 180458689 -47065889 + (CATATA)n Simple_repeat Simple_repeat 16 81 0 194 62 31 0 chr3 180459017 180459049 -47065529 + (TTG)n Simple_repeat Simple_repeat 2 34 0 1295 97 0 0 chr3 180459053 180459218 -47065360 - AluSc SINE Alu -24 285 121 2005 113 3 3 chr3 180459223 180459506 -47065072 - AluSc SINE Alu -26 283 1 24 0 0 0 chr3 180459510 180459534 -47065044 + AT_rich Low_complexity Low_complexity 1 24 0 654 269 79 13 chr3 180459574 180459945 -47064633 - MLT1J LTR MaLR -58 453 7 315 264 198 8 chr3 180460439 180460560 -47064018 - MIR3 SINE MIR -1 207 64 361 292 25 33 chr3 180460954 180461074 -47063504 - MIR3 SINE MIR -5 203 85 21 0 0 0 chr3 180461261 180461282 -47063296 + AT_rich Low_complexity Low_complexity 1 21 0 2091 121 7 7 chr3 180463022 180463319 -47061259 - AluSx SINE Alu -15 297 1 814 302 83 4 chr3 180463414 180463656 -47060922 - MIR SINE MIR 0 262 2 185 359 33 43 chr3 180463691 180463783 -47060795 + MIR SINE MIR 50 140 -122 306 300 22 0 chr3 180464149 180464239 -47060339 - L1MC4 LINE L1 -1337 6705 6614 205 237 0 0 chr3 180464239 180464277 -47060301 + (TG)n Simple_repeat Simple_repeat 2 39 0 23 0 0 0 chr3 180464638 180464661 -47059917 + AT_rich Low_complexity Low_complexity 1 23 0 2398 57 0 0 chr3 180464813 180465096 -47059482 + AluY SINE Alu 17 299 -12 315 0 0 0 chr3 180466774 180466809 -47057769 + (TG)n Simple_repeat Simple_repeat 1 35 0 308 316 149 44 chr3 180466855 180467238 -47057340 + L1M2 LINE L1 653 1075 -5774 2382 88 0 0 chr3 180468558 180468852 -47055726 - AluSq SINE Alu -19 294 1 479 262 141 70 chr3 180469092 180469489 -47055089 + L1ME3A LINE L1 188 612 -5593 582 242 25 105 chr3 180469526 180469889 -47054689 + L1ME3A LINE L1 796 1129 -5076 308 299 46 46 chr3 180470042 180470216 -47054362 + L1ME3A LINE L1 2125 2298 -4098 1753 169 14 4 chr3 180470247 180470525 -47054053 + AluJb SINE Alu 14 294 -18 360 273 118 56 chr3 180470552 180470874 -47053704 + L1ME3A LINE L1 2279 2620 -3595 1300 283 103 46 chr3 180470996 180472516 -47052062 + L1ME3A LINE L1 3593 5199 -1016 320 276 65 16 chr3 180472576 180472699 -47051879 + L1ME3A LINE L1 5331 5459 -756 2161 115 0 7 chr3 180472699 180472986 -47051592 + AluSg SINE Alu 1 285 -25 192 70 70 0 chr3 180472990 180473033 -47051545 + (TA)n Simple_repeat Simple_repeat 1 46 0 372 210 84 14 chr3 180473043 180473185 -47051393 + L1ME3A LINE L1 5483 5632 -558 2216 182 36 38 chr3 180473186 180473496 -47051082 + MLT1D LTR MaLR 2 312 -193 1846 149 61 28 chr3 180473496 180473859 -47050719 - THE1C LTR MaLR 0 375 1 2216 182 36 38 chr3 180473859 180474053 -47050525 + MLT1D LTR MaLR 312 505 0 419 236 229 7 chr3 180474136 180474276 -47050302 + MER5A DNA MER1_type 18 188 -1 430 324 51 33 chr3 180474300 180474576 -47050002 + L1ME3A LINE L1 5753 6031 -208 1814 198 93 24 chr3 180476673 180477092 -47047486 - MLT2B2 LTR ERVL -67 448 1 1862 171 3 0 chr3 180477092 180477390 -47047188 + AluJb SINE Alu 1 299 -13 2282 95 0 16 chr3 180477429 180477563 -47047015 + AluSg SINE Alu 1 136 -174 2166 133 7 0 chr3 180477563 180477871 -47046707 + AluSg SINE Alu 1 310 0 2282 95 0 16 chr3 180477871 180478040 -47046538 + AluSg SINE Alu 136 299 -11 2388 101 8 17 chr3 180478664 180479022 -47045556 - THE1A LTR MaLR 0 355 1 9816 90 87 0 chr3 180479022 180480475 -47044103 - THE1A-int LTR MaLR 0 1580 1 2393 107 8 8 chr3 180480475 180480830 -47043748 - THE1A LTR MaLR 0 355 1 372 253 14 72 chr3 180481376 180481515 -47043063 - MER5A DNA MER1_type -55 126 4 267 347 61 34 chr3 180481593 180481740 -47042838 + L2 LINE L2 3122 3272 0 199 302 47 65 chr3 180481805 180482037 -47042541 - L2 LINE L2 -1314 2000 1773 262 298 48 0 chr3 180482377 180482461 -47042117 - MIR SINE MIR -7 255 168 6274 97 17 2 chr3 180484637 180486500 -47038078 - L1PA10 LINE L1 -16 6152 4275 497 254 200 19 chr3 180486777 180487242 -47037336 + MER115 DNA AcHobo 135 4028 -3 209 362 34 20 chr3 180487433 180487582 -47036996 - L2 LINE L2 -556 2758 2608 698 135 5 38 chr3 180488022 180488207 -47036371 + (TTTC)n Simple_repeat Simple_repeat 2 180 0 488 342 31 85 chr3 180488823 180489212 -47035366 - L2 LINE L2 -1 3271 2904 354 267 40 0 chr3 180489372 180489473 -47035105 - L2 LINE L2 -613 2701 2597 390 263 179 27 chr3 180489484 180489746 -47034832 + L2 LINE L2 3012 3313 0 214 273 0 0 chr3 180490828 180490872 -47033706 + polypyrimidine Low_complexity Low_complexity 5 48 0 23 0 0 0 chr3 180491807 180491830 -47032748 + AT_rich Low_complexity Low_complexity 1 23 0 2349 121 103 5 chr3 180492797 180493187 -47031391 - MSTA LTR MaLR 0 428 1 184 296 19 19 chr3 180493418 180493472 -47031106 - MER5B DNA MER1_type -19 159 106 * 284 269 60 54 chr3 180493424 180493573 -47031005 + MER5A DNA MER1_type 37 186 -3 915 234 110 57 chr3 180493712 180494130 -47030448 - MLT1J LTR MaLR 0 511 72 211 284 98 10 chr3 180494185 180494287 -47030291 + MIR3 SINE MIR 93 203 -5 226 388 84 20 chr3 180496147 180496397 -47028181 + L2 LINE L2 2814 3079 -193 953 221 106 17 chr3 180497052 180497287 -47027291 + MIR SINE MIR 7 262 0 290 314 96 53 chr3 180499145 180499562 -47025016 - L2 LINE L2 -31 3241 2807 334 282 75 43 chr3 180500272 180500460 -47024118 + LTR16C LTR ERVL 72 265 -226 349 237 85 34 chr3 180500493 180500611 -47023967 + LTR16C LTR ERVL 368 491 0 244 200 83 50 chr3 180501048 180501108 -47023470 + MER5A DNA MER1_type 3 64 -125 193 243 0 0 chr3 180501420 180501457 -47023121 - L2 LINE L2 -16 3297 3261 352 143 54 0 chr3 180501538 180501594 -47022984 + FRAM SINE Alu 60 118 -48 245 229 72 12 chr3 180505988 180506071 -47018507 - MIR SINE MIR 0 262 175 440 150 0 0 chr3 180506073 180506153 -47018425 + MLT2B3 LTR ERVL 1 80 -474 10794 142 16 20 chr3 180506156 180506416 -47018162 + HERVL LTR ERVL 3026 3286 -2368 2305 108 0 0 chr3 180506416 180506712 -47017866 - AluSc SINE Alu -13 296 1 10794 142 16 20 chr3 180506712 180507334 -47017244 + HERVL LTR ERVL 3286 3909 -1745 6403 82 8 15 chr3 180507334 180509143 -47015435 + L1PA10 LINE L1 4342 6168 0 1644 58 0 0 chr3 180509150 180509357 -47015221 + L1PA14 LINE L1 5955 6161 0 10794 142 16 20 chr3 180509357 180510324 -47014254 + HERVL LTR ERVL 3915 4876 -778 1296 148 106 4 chr3 180510326 180510590 -47013988 + MSTA LTR MaLR 138 428 0 472 274 85 0 chr3 180510596 180510749 -47013829 - MIR SINE MIR -91 171 6 21 0 0 0 chr3 180511399 180511420 -47013158 + AT_rich Low_complexity Low_complexity 1 21 0 712 298 74 35 chr3 180511706 180512109 -47012469 - MLT1L LTR MaLR 0 615 197 208 250 54 0 chr3 180512242 180512298 -47012280 - MIR SINE MIR -109 153 95 1563 108 31 0 chr3 180512325 180512548 -47012030 - MER30 DNA MER1_type 0 230 1 1333 107 103 37 chr3 180512559 180512801 -47011777 + THE1B LTR MaLR 1 258 -106 4013 104 46 12 chr3 180512816 180513496 -47011082 - L1PA15-16 LINE L1 -3986 2863 2161 1489 131 57 39 chr3 180513491 180513773 -47010805 - L1PA15-16 LINE L1 -6347 502 216 * 2007 218 10 45 chr3 180513774 180514265 -47010313 - MER52A LTR ERV1 0 1755 1282 1233 133 0 5 chr3 180514329 180514524 -47010054 - L1PA15-16 LINE L1 -6646 203 10 216 0 0 0 chr3 180514524 180514548 -47010030 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 729 88 0 0 chr3 180515369 180515471 -47009107 + (TCTA)n Simple_repeat Simple_repeat 3 104 0 2518 201 45 40 chr3 180515480 180516106 -47008472 - MER82 DNA MER2_type -22 631 3 1270 143 5 0 chr3 180516118 180516321 -47008257 + MER2 DNA MER2_type 3 206 -139 457 188 62 71 chr3 180516545 180516657 -47007921 + MER81 DNA DNA 2 112 -2 21 0 0 0 chr3 180517042 180517063 -47007515 + AT_rich Low_complexity Low_complexity 1 21 0 572 190 43 82 chr3 180517178 180517362 -47007216 + MER5B DNA MER1_type 1 177 -1 431 293 147 65 chr3 180517518 180517750 -47006828 + MIR SINE MIR 12 262 0 251 175 0 0 chr3 180517922 180517962 -47006616 + MER58 DNA MER1_type 1 40 -184 289 257 0 14 chr3 180518007 180518081 -47006497 + MER58 DNA MER1_type 2348 2420 0 1157 180 59 39 chr3 180518102 180518357 -47006221 + Charlie1a DNA MER1_type 14 273 -1182 811 172 100 11 chr3 180518358 180518538 -47006040 - MER20 DNA MER1_type 0 219 24 4057 170 114 40 chr3 180518596 180519691 -47004887 + Charlie1a DNA MER1_type 280 1455 0 27 29 0 0 chr3 180519712 180519746 -47004832 + AT_rich Low_complexity Low_complexity 1 34 0 307 197 53 0 chr3 180519904 180519980 -47004598 + MIR SINE MIR 82 161 -101 262 265 69 20 chr3 180520114 180520216 -47004362 + MIR SINE MIR 136 242 -20 367 298 175 26 chr3 180520979 180521207 -47003371 + L2 LINE L2 3021 3282 -31 1742 141 35 25 chr3 180522093 180522377 -47002201 + AluJb SINE Alu 1 287 -25 285 202 143 12 chr3 180522566 180522734 -47001844 - Charlie7 DNA MER1_type -36 2576 2387 * 839 276 85 28 chr3 180522728 180523080 -47001498 - Charlie7 DNA MER1_type -1970 642 271 1797 135 3 58 chr3 180523469 180523796 -47000782 - AluSx SINE Alu -1 311 3 189 282 12 82 chr3 180524598 180524683 -46999895 - L2 LINE L2 -212 3060 2982 219 408 30 9 chr3 180524711 180524944 -46999634 - L2 LINE L2 -407 2907 2670 532 262 6 52 chr3 180525250 180525422 -46999156 - MIR SINE MIR -50 212 49 2231 120 24 24 chr3 180526095 180526470 -46998108 - THE1C LTR MaLR 0 375 1 22 56 0 0 chr3 180526591 180526627 -46997951 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr3 180527377 180527399 -46997179 + AT_rich Low_complexity Low_complexity 1 22 0 195 309 29 0 chr3 180528740 180528808 -46995770 - MIR SINE MIR -21 241 172 426 238 215 33 chr3 180530720 180530934 -46993644 + MIR SINE MIR 3 255 -7 746 217 140 37 chr3 180530986 180531258 -46993320 + MER5C DNA MER1_type 21 320 -4 197 286 48 32 chr3 180532051 180532114 -46992464 + L2 LINE L2 3250 3313 0 958 226 14 14 chr3 180532578 180532795 -46991783 - MER20 DNA MER1_type -1 218 2 468 0 0 0 chr3 180532797 180532849 -46991729 + (TA)n Simple_repeat Simple_repeat 1 52 0 1349 211 166 47 chr3 180735547 180735998 -46788580 - MLT1D LTR MaLR 0 505 1 210 217 0 0 chr3 180736118 180736164 -46788414 - L2 LINE L2 -344 2969 2924 264 200 0 0 chr3 180736604 180736664 -46787914 + (TA)n Simple_repeat Simple_repeat 2 61 0 215 291 58 39 chr3 180739816 180739919 -46784659 + L2 LINE L2 3199 3303 -10 1862 142 3 24 chr3 180740156 180740451 -46784127 - AluSx SINE Alu -23 289 1 2070 176 83 20 chr3 180741072 180741520 -46783058 + L1MB8 LINE L1 5563 6038 -140 29941 106 8 12 chr3 180741544 180747247 -46777331 - L1PA7 LINE L1 0 6469 764 375 242 10 20 chr3 180747236 180747335 -46777243 + L1MB8 LINE L1 6013 6110 -68 * 351 277 95 61 chr3 180749315 180749463 -46775115 - MIR SINE MIR -13 249 97 302 208 0 94 chr3 180749580 180749686 -46774892 - Charlie7 DNA MER1_type -1 2611 2516 1026 253 59 46 chr3 180749705 180750248 -46774330 - Charlie7 DNA MER1_type -1928 684 99 803 194 62 12 chr3 180750871 180751031 -46773547 + MER5A DNA MER1_type 17 184 -5 261 0 0 0 chr3 180751565 180751594 -46772984 + (TG)n Simple_repeat Simple_repeat 2 30 0 189 0 0 0 chr3 180753036 180753057 -46771521 + (A)n Simple_repeat Simple_repeat 1 21 0 2321 57 4 0 chr3 180753402 180753725 -46770853 + AluY SINE Alu 1 324 0 37 23 0 0 chr3 180755085 180755129 -46769449 + AT_rich Low_complexity Low_complexity 1 44 0 785 188 0 0 chr3 180755288 180755421 -46769157 + FLAM_A SINE Alu 1 133 0 25 0 0 0 chr3 180756141 180756166 -46768412 + AT_rich Low_complexity Low_complexity 1 25 0 25 65 0 0 chr3 180756178 180756224 -46768354 + AT_rich Low_complexity Low_complexity 1 46 0 745 160 10 82 chr3 180756286 180756480 -46768098 - MER104 DNA MER2_type 0 180 1 213 196 0 0 chr3 180757325 180757371 -46767207 + (TA)n Simple_repeat Simple_repeat 2 47 0 709 189 11 50 chr3 180758119 180758299 -46766279 - MER5B DNA MER1_type -1 177 5 446 234 172 45 chr3 180758697 180758941 -46765637 - LTR67 LTR ERVL 0 557 283 350 316 41 39 chr3 180761438 180761591 -46762987 - MIR SINE MIR -58 150 23 22 0 0 0 chr3 180762295 180762317 -46762261 + AT_rich Low_complexity Low_complexity 1 22 0 318 363 53 45 chr3 180762927 180763172 -46761406 - L2 LINE L2 -86 3186 2940 272 272 136 68 chr3 180764110 180764257 -46760321 - L2 LINE L2 -27 3286 3130 230 325 16 40 chr3 180764646 180764772 -46759806 + L2 LINE L2 2365 2487 -827 1082 323 77 13 chr3 180765391 180765962 -46758616 + L2 LINE L2 2709 3313 0 357 188 58 0 chr3 180765983 180766052 -46758526 + MIR3 SINE MIR 121 193 -15 1816 138 56 0 chr3 180768160 180768497 -46756081 + AluSx SINE Alu 1 352 0 380 321 38 8 chr3 180769002 180769133 -46755445 - MER91C DNA MER1_type -5 135 1 218 373 24 24 chr3 180769960 180770086 -46754492 + L2 LINE L2 2966 3091 -181 244 287 96 11 chr3 180770298 180770392 -46754186 + MER91C DNA MER1_type 9 110 -30 745 183 8 0 chr3 180770449 180770575 -46754003 + FLAM_C SINE Alu 1 127 -6 533 50 125 12 chr3 180770913 180770993 -46753585 - MSTA LTR MaLR -339 89 1 1005 120 42 12 chr3 180770993 180771160 -46753418 - MSTA-int LTR MaLR 0 1651 1480 9194 169 41 2 chr3 180771347 180772929 -46751649 - MSTA-int LTR MaLR -7 1644 1 1948 139 172 5 chr3 180772929 180773296 -46751282 - MSTA LTR MaLR 0 428 1 253 228 101 51 chr3 180773302 180773381 -46751197 + L2 LINE L2 3190 3272 0 267 341 102 26 chr3 180773389 180773615 -46750963 - L2 LINE L2 -225 3047 2805 504 276 86 49 chr3 180775497 180775823 -46748755 - MER46C DNA MER2_type 0 338 1 31 58 0 0 chr3 180777389 180777441 -46747137 + AT_rich Low_complexity Low_complexity 1 52 0 482 333 77 68 chr3 180777849 180778329 -46746249 + L2 LINE L2 2375 2911 -361 2054 163 43 43 chr3 180778329 180778795 -46745783 + MER31B LTR ERV1 1 466 0 482 333 77 68 chr3 180778795 180779146 -46745432 + L2 LINE L2 2911 3257 -15 792 303 129 53 chr3 180781758 180782166 -46742412 + L2 LINE L2 2309 2685 -587 2103 93 6 42 chr3 180782166 180782299 -46742279 + AluSc SINE Alu 1 137 -172 2465 55 0 23 chr3 180782299 180782609 -46741969 + AluY SINE Alu 1 303 -8 2103 93 6 42 chr3 180782609 180782788 -46741790 + AluSc SINE Alu 137 302 -7 2842 33 0 0 chr3 180782789 180783125 -46741453 + L1PA3 LINE L1 5820 6155 0 792 303 129 53 chr3 180783125 180783477 -46741101 + L2 LINE L2 2685 3161 -111 2273 102 3 0 chr3 180783477 180783770 -46740808 + AluSg SINE Alu 1 294 -16 792 303 129 53 chr3 180783770 180783886 -46740692 + L2 LINE L2 3161 3267 -5 777 246 57 20 chr3 180784387 180784635 -46739943 - MIR SINE MIR -2 260 4 931 129 7 0 chr3 180785862 180786017 -46738561 - L1MA4 LINE L1 -8 6292 6137 2170 104 11 0 chr3 180789373 180789690 -46734888 - AluSq SINE Alu 0 321 2 577 284 58 19 chr3 180791103 180791311 -46733267 - MIR SINE MIR -30 232 17 1241 187 72 28 chr3 180791467 180791718 -46732860 + AluJo SINE Alu 36 297 -15 1271 113 6 0 chr3 180791720 180791897 -46732681 + AluSq SINE Alu 39 216 -97 1901 100 0 78 chr3 180791934 180792265 -46732313 + AluSq SINE Alu 1 307 0 288 239 196 0 chr3 180792511 180792603 -46731975 + MIR3 SINE MIR 91 200 -8 1897 126 167 21 chr3 180792735 180793107 -46731471 - MSTA LTR MaLR -2 426 1 234 358 52 60 chr3 180793140 180793274 -46731304 + L2 LINE L2 3110 3242 -30 2343 59 3 3 chr3 180793616 180793906 -46730672 - AluY SINE Alu -21 290 1 587 306 47 13 chr3 180794193 180794575 -46730003 + L1ME LINE L1 4442 4836 -1310 2286 77 0 7 chr3 180794958 180795255 -46729323 + AluY SINE Alu 1 295 -16 1141 237 156 17 chr3 180795465 180795972 -46728606 + L1ME LINE L1 5263 5819 -351 324 246 42 70 chr3 180796912 180797054 -46727524 - LTR67 LTR ERVL -11 546 409 707 290 78 25 chr3 180797295 180797805 -46726773 + L1MC4a LINE L1 5361 5897 -1911 2124 117 3 0 chr3 180797970 180798304 -46726274 - AluSx SINE Alu 0 312 2 744 259 35 25 chr3 180798494 180798695 -46725883 + MIR SINE MIR 52 254 -8 204 270 0 48 chr3 180800197 180800260 -46724318 + GA-rich Low_complexity Low_complexity 3 62 0 333 47 0 0 chr3 180800659 180800702 -46723876 + (TG)n Simple_repeat Simple_repeat 2 44 0 273 204 19 0 chr3 180801505 180801559 -46723019 - MER45A DNA AcHobo 0 178 124 * 1402 237 62 120 chr3 180801554 180802220 -46722358 - MER45C DNA AcHobo -320 633 7 180 319 187 0 chr3 180802225 180802316 -46722262 - L2 LINE L2 -31 3241 3134 710 270 15 43 chr3 180802356 180802604 -46721974 - MIR SINE MIR -15 247 13 225 357 14 0 chr3 180803366 180803436 -46721142 + MIR SINE MIR 30 100 -108 501 271 35 9 chr3 180803469 180803621 -46720957 + MIR SINE MIR 3 153 -62 250 275 55 22 chr3 180803723 180803814 -46720764 + MIR3 SINE MIR 109 202 -6 24 0 0 0 chr3 180803999 180804023 -46720555 + GC_rich Low_complexity Low_complexity 1 24 0 207 0 0 0 chr3 180805944 180805967 -46718611 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 336 102 0 0 chr3 180806241 180806290 -46718288 + (ATAGG)n Simple_repeat Simple_repeat 4 52 0 188 299 145 62 chr3 180806458 180807009 -46717569 - L2 LINE L2 -571 2743 2147 484 184 53 35 chr3 180807123 180807237 -46717341 - MER5B DNA MER1_type -23 155 40 806 181 30 56 chr3 180807238 180807508 -46717070 + L1MC5 LINE L1 7667 7929 -32 199 261 0 0 chr3 180807512 180807558 -46717020 - MER5B DNA MER1_type -128 50 5 309 51 0 0 chr3 180808218 180808257 -46716321 + (TG)n Simple_repeat Simple_repeat 2 40 0 1197 93 0 0 chr3 180810157 180810307 -46714271 - AluSq/x SINE Alu -163 150 1 2103 106 0 24 chr3 180813018 180813333 -46711245 + AluSq SINE Alu 1 308 0 665 228 0 0 chr3 180814325 180814439 -46710139 + MER81 DNA DNA 1 114 0 22 70 0 0 chr3 180815158 180815201 -46709377 + AT_rich Low_complexity Low_complexity 1 43 0 249 269 74 74 chr3 180816643 180816792 -46707786 - MIR SINE MIR -91 171 23 3207 251 154 15 chr3 180818501 180819907 -46704671 + L2 LINE L2 1705 3313 0 2011 105 54 0 chr3 180822260 180822536 -46702042 + AluY SINE Alu 1 291 -20 42003 39 2 5 chr3 180822672 180828838 -46695740 + L1PA4 LINE L1 7 6152 -3 191 351 78 7 chr3 180829581 180829735 -46694843 + L2 LINE L2 2926 3090 -182 200 259 147 17 chr3 180829888 180830004 -46694574 + MIR SINE MIR 131 261 -1 195 235 132 59 chr3 180830312 180830380 -46694198 - L3 LINE CR1 -1240 337 265 905 297 65 44 chr3 180830844 180831386 -46693192 + LTR67 LTR ERVL 2 554 -3 353 298 19 0 chr3 180831397 180831501 -46693077 + MIR3 SINE MIR 73 178 -30 582 298 66 5 chr3 180831818 180832016 -46692562 - MIR SINE MIR -32 230 21 180 0 0 0 chr3 180832982 180833002 -46691576 + (TTTTTG)n Simple_repeat Simple_repeat 3 22 0 2025 110 53 0 chr3 180833308 180833590 -46690988 - AluSg SINE Alu -13 297 1 320 355 56 54 chr3 180833893 180834364 -46690214 - L2 LINE L2 -5 3267 2797 436 297 103 7 chr3 180835195 180835350 -46689228 + MIR SINE MIR 66 235 -27 21 0 0 0 chr3 180836235 180836256 -46688322 + AT_rich Low_complexity Low_complexity 1 21 0 1299 244 49 34 chr3 180836862 180837248 -46687330 + MLT1I LTR MaLR 18 409 0 234 247 55 14 chr3 180838525 180838598 -46685980 - LTR33A LTR ERVL 0 523 448 2625 23 0 0 chr3 180838609 180838915 -46685663 + L1PA2 LINE L1 5850 6155 0 246 300 107 36 chr3 180839401 180839541 -46685037 - L2 LINE L2 -2 3311 3162 352 300 23 23 chr3 180840021 180840151 -46684427 - HAL1b LINE L1 -998 350 221 40414 37 23 2 chr3 180840158 180846182 -46678396 + L1PA3 LINE L1 5 6155 0 202 188 25 62 chr3 180846397 180846477 -46678101 + T-rich Low_complexity Low_complexity 4 80 0 300 171 14 29 chr3 180847110 180847180 -46677398 - MLT1H LTR MaLR -382 167 99 2641 128 31 5 chr3 180847189 180847604 -46676974 + MSTB LTR MaLR 1 426 0 2110 132 10 10 chr3 180847648 180847952 -46676626 + AluSx SINE Alu 1 304 -8 703 304 130 36 chr3 180848595 180849088 -46675490 - L3 LINE CR1 -637 940 402 248 200 13 0 chr3 180849114 180849189 -46675389 + GA-rich Low_complexity Low_complexity 3 78 0 433 209 29 0 chr3 180849395 180849500 -46675078 + MER103 DNA DNA 49 156 -10 497 276 14 28 chr3 180849815 180849960 -46674618 + MIR SINE MIR 64 206 -56 820 226 112 127 chr3 180851021 180851592 -46672986 - MLT1G1 LTR MaLR -6 549 16 279 211 0 0 chr3 180852180 180852275 -46672303 + (CA)n Simple_repeat Simple_repeat 1 95 0 402 325 156 39 chr3 180853369 180854236 -46670342 - L2 LINE L2 -11 3261 2292 199 296 159 0 chr3 180854626 180854714 -46669864 - L2 LINE L2 0 3313 3212 465 234 40 24 chr3 180855238 180855362 -46669216 - L2 LINE L2 0 3313 3188 265 179 26 39 chr3 180855570 180855648 -46668930 + MLT1I LTR MaLR 316 392 -17 1383 148 35 0 chr3 180856595 180856851 -46667727 + L1MA6 LINE L1 6036 6300 0 236 275 0 57 chr3 180858122 180858210 -46666368 + MIR SINE MIR 78 159 -56 1194 279 23 43 chr3 180858313 180858783 -46665795 + MLT1J LTR MaLR 27 487 -24 740 338 90 17 chr3 180858875 180859244 -46665334 + L2 LINE L2 2690 3132 -181 372 71 0 0 chr3 180859244 180859300 -46665278 + (CA)n Simple_repeat Simple_repeat 2 57 0 740 338 90 17 chr3 180859300 180859497 -46665081 + L2 LINE L2 3132 3313 0 1024 219 58 42 chr3 180859604 180859915 -46664663 - MER46C DNA MER2_type -22 316 1 943 280 13 4 chr3 180860192 180860428 -46664150 - MIR SINE MIR 0 262 25 259 318 139 23 chr3 180860997 180861126 -46663452 - L2 LINE L2 -7 3265 3122 242 266 63 25 chr3 180861171 180861250 -46663328 - L2 LINE L2 -1 3312 3231 638 290 50 18 chr3 180861283 180861566 -46663012 - MER102b DNA MER1_type -13 328 37 183 80 0 0 chr3 180862267 180862292 -46662286 + (TA)n Simple_repeat Simple_repeat 2 26 0 378 0 0 0 chr3 180863635 180863677 -46660901 + (CA)n Simple_repeat Simple_repeat 1 42 0 406 304 140 4 chr3 180865299 180865549 -46659029 + MER102b DNA MER1_type 9 292 -49 260 257 14 0 chr3 180865694 180865764 -46658814 + MER102b DNA MER1_type 1257 1327 -3 316 276 68 6 chr3 180866819 180866982 -46657596 - L1ME4a LINE L1 0 6121 5949 5731 122 7 8 chr3 180867143 180868988 -46655590 - L1PA13 LINE L1 -1 6162 4320 1089 192 130 37 chr3 180869000 180869335 -46655243 - MER51A LTR ERV1 -18 616 261 1767 155 16 0 chr3 180869359 180869669 -46654909 - L1P LINE L1 -1825 4321 4007 33 0 0 0 chr3 180869696 180869729 -46654849 + AT_rich Low_complexity Low_complexity 1 33 0 2698 216 46 43 chr3 180869756 180870465 -46654113 - L1MA9 LINE L1 -79 6233 5520 5079 98 4 0 chr3 180870465 180871150 -46653428 - LTR12 LTR ERV1 0 688 1 2698 216 46 43 chr3 180871150 180871205 -46653373 - L1MA9 LINE L1 -792 5520 5467 622 281 103 72 chr3 180871225 180871697 -46652881 - L1ME4a LINE L1 -58 6063 5571 278 309 73 28 chr3 180871999 180872355 -46652223 - L1ME4a LINE L1 -1003 5143 4772 2282 79 0 22 chr3 180872380 180872695 -46651883 - AluY SINE Alu -3 308 1 185 225 0 0 chr3 180873079 180873119 -46651459 - MIR SINE MIR -103 159 120 290 217 57 38 chr3 180873955 180874061 -46650517 - 7SK RNA RNA -84 109 2 458 289 87 0 chr3 180874186 180874335 -46650243 + MIR SINE MIR 101 262 0 220 255 21 0 chr3 180874413 180874460 -46650118 - L3 LINE CR1 -4 1573 1526 683 215 127 0 chr3 180874863 180875021 -46649557 - MER45A DNA AcHobo 0 178 1 180 29 176 0 chr3 180876398 180876432 -46648146 + L2 LINE L2 3205 3244 -69 374 304 96 10 chr3 180876470 180876694 -46647884 - MIR SINE MIR -10 252 9 279 0 0 0 chr3 180877426 180877457 -46647121 + (TG)n Simple_repeat Simple_repeat 2 32 0 3297 205 37 32 chr3 180877479 180878398 -46646180 - L1MC4 LINE L1 -131 7911 6988 401 276 111 46 chr3 180879120 180879337 -46645241 - MIR SINE MIR -3 259 29 230 288 176 41 chr3 180879529 180879994 -46644584 + L2 LINE L2 2449 2976 -338 219 271 12 12 chr3 180880444 180880529 -46644049 + (TA)n Simple_repeat Simple_repeat 1 85 0 929 278 117 14 chr3 180880741 180881333 -46643245 + L1ME4a LINE L1 5257 5928 -193 2091 103 3 51 chr3 180882342 180882653 -46641925 - AluY SINE Alu -15 296 1 273 329 41 20 chr3 180883925 180884071 -46640507 - MIR SINE MIR -37 225 77 376 208 0 0 chr3 180884094 180884166 -46640412 + Tigger5 DNA MER2_type 2252 2323 0 345 100 0 0 chr3 180884921 180884971 -46639607 + (TA)n Simple_repeat Simple_repeat 1 50 0 10978 60 83 4 chr3 180885032 180886612 -46637966 + L1P LINE L1 1 1704 -4442 9825 105 7 10 chr3 180886921 180888553 -46636025 - L1P LINE L1 -2503 3643 2017 2891 142 0 2 chr3 180888547 180889063 -46635515 - L1P LINE L1 -4414 1732 1218 * 1419 191 3 22 chr3 180889350 180889674 -46634904 - L1MEc LINE L1 -2294 3921 3604 1960 138 0 7 chr3 180889685 180889974 -46634604 + AluY SINE Alu 15 301 -10 692 144 8 8 chr3 180890960 180891078 -46633500 - AluSg/x SINE Alu -15 297 180 1751 177 4 24 chr3 180891268 180891729 -46632849 + L1P LINE L1 4710 5325 -821 9451 62 19 6 chr3 180895292 180897109 -46627469 - L1PA6 LINE L1 -295 5859 4023 497 70 43 78 chr3 180897226 180897341 -46627237 + THE1C-int LTR MaLR 1470 1580 0 2194 122 40 27 chr3 180897341 180897711 -46626867 + THE1C LTR MaLR 1 375 0 1700 227 91 53 chr3 180897712 180898808 -46625770 - L1MEc LINE L1 -3380 2835 1745 522 276 105 62 chr3 180898829 180899133 -46625445 - HAL1 LINE L1 -856 1651 1335 282 196 0 18 chr3 180899137 180899193 -46625385 + Tigger5 DNA MER2_type 1 55 -2268 477 195 0 0 chr3 180899203 180899290 -46625288 + Tigger5 DNA MER2_type 2237 2323 0 18008 64 2 7 chr3 180899677 180901484 -46623094 + L1P LINE L1 1982 3774 -2372 1651 100 0 9 chr3 180901484 180901714 -46622864 + AluSg/x SINE Alu 82 309 -1 18008 64 2 7 chr3 180901714 180902437 -46622141 + L1P LINE L1 3774 4499 -1647 8505 67 12 1 chr3 180902537 180903723 -46620855 - L1P LINE L1 -1339 4807 3609 1894 123 0 3 chr3 180903862 180904171 -46620407 + L1P5 LINE L1 5318 5625 -526 * 8129 66 11 1 chr3 180904166 180904369 -46620209 + L1P LINE L1 3414 3613 -2533 2136 183 23 23 chr3 180904369 180904801 -46619777 - MSTB1 LTR MaLR 0 432 1 8129 66 11 1 chr3 180904801 180905837 -46618741 + L1P LINE L1 3613 4733 -1413 452 263 154 46 chr3 180906908 180907083 -46617495 - MIR SINE MIR -49 213 20 243 0 0 0 chr3 180907284 180907311 -46617267 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 3468 52 0 11 chr3 180907311 180907751 -46616827 - L1PA7 LINE L1 -12 6142 5708 15283 34 4 0 chr3 180907873 180909850 -46614728 - L1P LINE L1 -2222 3924 1940 224 263 74 42 chr3 180911132 180911227 -46613351 + L2 LINE L2 2956 3053 -260 21 0 0 0 chr3 180911858 180911879 -46612699 + AT_rich Low_complexity Low_complexity 1 21 0 408 247 32 0 chr3 180912044 180912137 -46612441 + AluJ/FLAM SINE Alu 1 96 -216 414 85 0 0 chr3 180912356 180912415 -46612163 + (GGAGAA)n Simple_repeat Simple_repeat 6 64 0 240 318 187 0 chr3 180912735 180912842 -46611736 - MER91A DNA MER1_type -54 142 16 242 356 30 38 chr3 180912971 180913103 -46611475 + L2 LINE L2 2923 3053 -219 276 273 125 0 chr3 180913354 180913442 -46611136 + MIR SINE MIR 81 179 -83 287 228 25 13 chr3 180914540 180914619 -46609959 + L1P LINE L1 4884 4963 -1183 441 162 15 0 chr3 180914909 180914977 -46609601 - AluS SINE Alu -244 69 1 864 173 109 45 chr3 180916101 180916303 -46608275 - MER20 DNA MER1_type -4 215 1 386 237 161 46 chr3 180917391 180917693 -46606885 + L1ME LINE L1 5402 5739 -382 3160 146 22 14 chr3 180917787 180918371 -46606207 - L1MA7 LINE L1 -2 6289 5701 756 216 24 88 chr3 180918652 180918949 -46605629 + AluJo SINE Alu 5 282 -30 5064 156 14 28 chr3 180919254 180919412 -46605166 - L1MA7 LINE L1 -1005 5141 4982 1290 232 69 0 chr3 180919412 180919573 -46605005 - AluJo SINE Alu -17 295 106 231 36 0 0 chr3 180919573 180919601 -46604977 + (ATTG)n Simple_repeat Simple_repeat 1 28 0 1290 232 69 0 chr3 180919601 180919715 -46604863 - AluJo SINE Alu -206 106 1 5064 156 14 28 chr3 180919715 180920611 -46603967 - L1MA7 LINE L1 -1164 4982 4102 2126 102 6 32 chr3 180921847 180922162 -46602416 + AluY SINE Alu 1 307 -4 21 36 0 0 chr3 180922255 180922283 -46602295 + AT_rich Low_complexity Low_complexity 1 28 0 254 245 53 53 chr3 180922396 180922490 -46602088 - MER5B DNA MER1_type -83 95 2 7092 53 2 0 chr3 180922677 180924022 -46600556 - L1PA5 LINE L1 -13 6141 4795 250 346 137 13 chr3 180924022 180924175 -46600403 + L2 LINE L2 2998 3169 -103 919 269 132 14 chr3 180924405 180924829 -46599749 + LTR33 LTR ERVL 48 521 0 209 338 26 0 chr3 180925079 180925156 -46599422 + L3 LINE CR1 1317 1395 -182 21 57 0 0 chr3 180925156 180925191 -46599387 + AT_rich Low_complexity Low_complexity 1 35 0 368 324 65 12 chr3 180925210 180925380 -46599198 - MIR SINE MIR -70 192 14 1660 146 0 29 chr3 180926342 180926650 -46597928 + L1P LINE L1 3989 4287 -1859 3574 31 0 2 chr3 180926651 180927072 -46597506 + L1PA5 LINE L1 5728 6147 -7 238 229 0 0 chr3 180927086 180927147 -46597431 + L1PBa LINE L1 2627 2687 -4176 258 308 27 0 chr3 180927595 180927669 -46596909 + MIR SINE MIR 39 113 -102 387 236 169 38 chr3 180927754 180927991 -46596587 - MLT1H LTR MaLR -6 536 269 708 252 35 73 chr3 180928088 180928402 -46596176 - MLT1H LTR MaLR -245 304 3 688 296 114 35 chr3 180929377 180929779 -46594799 - L2 LINE L2 -3 3310 2877 1798 149 69 6 chr3 180929948 180930283 -46594295 - MSTB1 LTR MaLR 0 432 77 999 68 0 0 chr3 180930627 180930759 -46593819 + (TAGA)n Simple_repeat Simple_repeat 1 132 0 307 245 22 14 chr3 180930769 180930908 -46593670 + (TA)n Simple_repeat Simple_repeat 1 140 0 1164 223 62 32 chr3 180930921 180931663 -46592915 - L1M3 LINE L1 -387 5793 5033 1776 74 4 0 chr3 180931784 180932026 -46592552 + L1PA4 LINE L1 5912 6154 -1 239 241 126 23 chr3 180932055 180932142 -46592436 + L1M4b LINE L1 20 115 -6744 * 5285 157 7 5 chr3 180932130 180932813 -46591765 + L1P4 LINE L1 4287 4975 -1193 2255 132 25 3 chr3 180932813 180933169 -46591409 - THE1B LTR MaLR 0 364 1 5285 157 7 5 chr3 180933169 180933830 -46590748 + L1P4 LINE L1 4975 5633 -535 264 220 0 44 chr3 180933858 180933949 -46590629 + THE1B LTR MaLR 1 87 -277 6014 109 11 5 chr3 180934052 180935058 -46589520 + L1P LINE L1 2643 3654 -2492 324 299 0 0 chr3 180936248 180936325 -46588253 + L2 LINE L2 2559 2635 -679 192 125 0 0 chr3 180937426 180937458 -46587120 + (TTTTG)n Simple_repeat Simple_repeat 1 32 0 23 68 0 0 chr3 180937695 180937739 -46586839 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr3 180938133 180938154 -46586424 + GC_rich Low_complexity Low_complexity 1 21 0 614 192 23 11 chr3 180940303 180940480 -46584098 + AluSg1 SINE Alu 1 179 -130 431 281 225 54 chr3 180942098 180942659 -46581919 + L2 LINE L2 2606 3270 -2 308 173 45 30 chr3 180942902 180943035 -46581543 + (TA)n Simple_repeat Simple_repeat 1 135 0 259 185 0 0 chr3 180943175 180943229 -46581349 + L1MA10 LINE L1 6281 6334 0 2082 98 3 0 chr3 180943754 180944040 -46580538 + AluY SINE Alu 2 288 -23 25 65 0 0 chr3 180944343 180944389 -46580189 + AT_rich Low_complexity Low_complexity 1 46 0 2519 36 7 0 chr3 180994784 180995085 -46529493 - AluY SINE Alu -7 304 2 2024 137 0 3 chr3 180995565 180995872 -46528706 - AluJb SINE Alu -6 306 1 1180 183 0 5 chr3 180995904 180996117 -46528461 - AluJb SINE Alu -15 297 86 559 294 83 37 chr3 180996235 180996779 -46527799 - L1 LINE L1 -1463 4752 4184 4216 192 76 33 chr3 180996796 180998014 -46526564 - L1MD1 LINE L1 -16 6226 4943 1597 147 22 45 chr3 180998014 180998034 -46526544 - AluJb SINE Alu 0 312 293 390 57 0 0 chr3 180998034 180998087 -46526491 + (TG)n Simple_repeat Simple_repeat 2 54 0 1597 147 22 45 chr3 180998087 180998379 -46526199 - AluJb SINE Alu -19 293 7 2308 87 0 3 chr3 180998422 180998722 -46525856 - AluSg SINE Alu -11 299 1 208 305 34 0 chr3 180998724 180998783 -46525795 + MER5A DNA MER1_type 129 189 0 21 36 0 0 chr3 180999390 180999418 -46525160 + AT_rich Low_complexity Low_complexity 1 28 0 742 280 63 71 chr3 180999472 180999883 -46524695 - L2 LINE L2 -1 3312 2905 33 85 0 0 chr3 181000836 181000918 -46523660 + AT_rich Low_complexity Low_complexity 1 82 0 1579 188 28 0 chr3 181001255 181001542 -46523036 + AluJo SINE Alu 1 295 -17 186 325 169 0 chr3 181004651 181004728 -46519850 + MIR SINE MIR 2 91 -171 901 283 71 65 chr3 181005668 181006273 -46518305 - L1MEc LINE L1 -5709 687 79 1896 254 132 20 chr3 181006371 181007458 -46517120 - L1MEc LINE L1 -2907 3308 2144 332 249 106 85 chr3 181007599 181007892 -46516686 - HAL1b LINE L1 -802 546 248 185 29 0 86 chr3 181008123 181008158 -46516420 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 813 162 0 39 chr3 181008531 181008685 -46515893 - FRAM SINE Alu -9 167 20 267 256 0 49 chr3 181008814 181008896 -46515682 - HAL1 LINE L1 -2417 90 13 284 230 108 0 chr3 181010746 181010820 -46513758 - MIR SINE MIR -96 166 85 1375 199 21 41 chr3 181011567 181011672 -46512906 + AluJo SINE Alu 13 119 -193 261 0 0 0 chr3 181011672 181011701 -46512877 + (CA)n Simple_repeat Simple_repeat 2 30 0 1375 199 21 41 chr3 181011701 181011886 -46512692 + AluJo SINE Alu 119 297 -15 253 192 0 26 chr3 181011886 181011964 -46512614 + GA-rich Low_complexity Low_complexity 1 76 0 14530 56 7 1 chr3 181012096 181014765 -46509813 - L1PA4 LINE L1 0 6155 3474 14012 45 7 0 chr3 181014917 181016704 -46507874 - L1P LINE L1 -2368 3778 1979 1189 77 0 0 chr3 181016699 181016855 -46507723 - L1P LINE L1 -5990 156 1 * 2162 127 28 25 chr3 181017006 181017369 -46507209 + THE1B LTR MaLR 1 364 0 1709 214 64 18 chr3 181017439 181017938 -46506640 - L1ME LINE L1 -2860 3220 2699 3204 265 62 38 chr3 181017948 181018092 -46506486 - L1ME LINE L1 -3873 2388 2249 2284 79 0 3 chr3 181018092 181018383 -46506195 - AluY SINE Alu -21 290 1 3204 265 62 38 chr3 181018383 181020065 -46504513 - L1ME LINE L1 -4012 2249 501 2151 122 0 0 chr3 181020065 181020359 -46504219 - AluSx SINE Alu -17 295 2 1182 115 15 50 chr3 181020361 181020561 -46504017 - Tigger2a DNA MER2_type -239 195 3 405 0 0 0 chr3 181020610 181020655 -46503923 + (TA)n Simple_repeat Simple_repeat 2 46 0 208 225 0 0 chr3 181021258 181021298 -46503280 + GA-rich Low_complexity Low_complexity 6 45 0 24 0 0 0 chr3 181021527 181021551 -46503027 + AT_rich Low_complexity Low_complexity 1 24 0 23 33 0 0 chr3 181022925 181022955 -46501623 + AT_rich Low_complexity Low_complexity 1 30 0 27 29 0 0 chr3 181023433 181023467 -46501111 + AT_rich Low_complexity Low_complexity 1 34 0 243 286 63 0 chr3 181023505 181023568 -46501010 - L2 LINE L2 -5 3267 3201 296 130 130 0 chr3 181023706 181023760 -46500818 - MLT1L LTR MaLR 0 615 555 741 213 119 50 chr3 181023766 181023800 -46500778 - MER58A DNA MER1_type -2196 224 194 1501 84 70 0 chr3 181023800 181024014 -46500564 + MER30 DNA MER1_type 2 230 0 741 213 119 50 chr3 181024014 181024181 -46500397 - MER58A DNA MER1_type -2226 194 9 2340 92 0 0 chr3 181024705 181024998 -46499580 + AluSx SINE Alu 1 293 -19 506 260 193 10 chr3 181025032 181025224 -46499354 - MIR SINE MIR -33 229 3 480 99 0 0 chr3 181025711 181025782 -46498796 + (TAGA)n Simple_repeat Simple_repeat 1 71 0 21 36 0 0 chr3 181026240 181026268 -46498310 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 181026330 181026351 -46498227 + AT_rich Low_complexity Low_complexity 1 21 0 422 62 31 0 chr3 181026378 181026443 -46498135 - MER41B LTR ERV1 -87 548 482 1593 200 0 24 chr3 181026469 181026764 -46497814 - AluJo SINE Alu -24 288 1 1540 194 111 14 chr3 181027230 181027591 -46496987 + MSTD LTR MaLR 1 396 0 1188 220 51 9 chr3 181029378 181029710 -46494868 - LTR37A LTR ERV1 -3 423 78 328 380 34 11 chr3 181029968 181030147 -46494431 + L2 LINE L2 2896 3078 -194 185 274 274 0 chr3 181030214 181030287 -46494291 + L2 LINE L2 3219 3311 -2 1100 178 171 11 chr3 181032035 181032299 -46492279 - MER2 DNA MER2_type -1 344 39 2563 234 130 19 chr3 181032300 181033379 -46491199 - L1MDa LINE L1 -2715 3825 2628 516 132 9 66 chr3 181033391 181033497 -46491081 - FLAM_C SINE Alu -7 136 37 941 249 35 20 chr3 181033522 181033864 -46490714 - L1MDa LINE L1 -3942 2598 2252 319 85 21 0 chr3 181034208 181034255 -46490323 + MADE1 DNA Mariner 1 48 -32 21 82 0 0 chr3 181034461 181034510 -46490068 + AT_rich Low_complexity Low_complexity 1 49 0 263 310 142 9 chr3 181035092 181035205 -46489373 + L2 LINE L2 2250 2377 -937 426 285 89 13 chr3 181035362 181035520 -46489058 + MIR3 SINE MIR 8 177 -31 1404 339 66 27 chr3 181035756 181036732 -46487846 - L2 LINE L2 -40 3273 2261 391 332 45 87 chr3 181036953 181037263 -46487315 - L2 LINE L2 -37 3235 2939 190 161 0 65 chr3 181037367 181037429 -46487149 + CT-rich Low_complexity Low_complexity 2 59 0 304 275 28 70 chr3 181037506 181037648 -46486930 - L1MC4a LINE L1 -1747 6061 5926 639 242 61 30 chr3 181038056 181038254 -46486324 + MIR SINE MIR 4 207 -55 238 304 104 0 chr3 181038402 181038517 -46486061 + MIR3 SINE MIR 67 193 -15 201 74 0 0 chr3 181038737 181038764 -46485814 + (TTTC)n Simple_repeat Simple_repeat 2 28 0 294 297 80 104 chr3 181040290 181040414 -46484164 + L2 LINE L2 704 830 -2484 1037 154 70 9 chr3 181040414 181040628 -46483950 + L1MA8 LINE L1 6058 6284 -7 294 297 80 104 chr3 181040628 181040830 -46483748 + L2 LINE L2 830 1022 -2292 476 285 139 51 chr3 181040913 181041345 -46483233 + L2 LINE L2 1617 2086 -1228 785 133 32 38 chr3 181041414 181041572 -46483006 - MER58 DNA MER1_type -3 2417 2261 724 307 187 15 chr3 181041618 181042250 -46482328 + L2 LINE L2 2562 3313 0 701 272 138 28 chr3 181043966 181044475 -46480103 - LTR50 LTR ERVL -132 663 65 35 41 0 0 chr3 181045067 181045116 -46479462 + AT_rich Low_complexity Low_complexity 1 49 0 702 168 13 34 chr3 181045132 181045281 -46479297 - MER106B DNA MER1_type -913 146 1 196 244 0 0 chr3 181045296 181045337 -46479241 + MIR SINE MIR 28 68 -140 310 246 16 49 chr3 181045438 181045560 -46479018 + CT-rich Low_complexity Low_complexity 3 120 0 987 220 32 5 chr3 181045807 181046025 -46478553 - MER58A DNA MER1_type 0 224 1 412 285 0 8 chr3 181046842 181047078 -46477500 + (TA)n Simple_repeat Simple_repeat 1 233 0 230 206 0 82 chr3 181047082 181047179 -46477399 + L1MC4 LINE L1 6615 6703 -1339 405 252 0 0 chr3 181047204 181047323 -46477255 + (TATG)n Simple_repeat Simple_repeat 3 121 0 268 315 0 0 chr3 181047341 181047430 -46477148 - L1MC4 LINE L1 -1340 6702 6614 254 308 0 0 chr3 181047354 181047445 -46477133 + L1MC4 LINE L1 6614 6704 -1338 * 2422 210 34 58 chr3 181047613 181048318 -46476260 - L1MC4 LINE L1 0 8042 7355 393 291 232 39 chr3 181048920 181049096 -46475482 - L3b LINE CR1 -88 1495 1354 1773 153 34 3 chr3 181049096 181049391 -46475187 - AluJb SINE Alu -8 304 1 393 291 232 39 chr3 181049391 181049520 -46475058 - L3b LINE CR1 -229 1354 1131 23 54 0 0 chr3 181050174 181050211 -46474367 + AT_rich Low_complexity Low_complexity 1 37 0 476 259 35 8 chr3 181053187 181053356 -46471222 - L1MC5 LINE L1 -1011 6803 6613 415 237 86 59 chr3 181053356 181053508 -46471070 - MER104 DNA Tc2 -3 177 22 356 337 39 39 chr3 181053710 181053792 -46470786 + L1M4 LINE L1 3705 3786 -2360 2027 148 0 3 chr3 181053792 181054102 -46470476 + AluSg SINE Alu 1 309 -1 356 337 39 39 chr3 181054102 181054197 -46470381 + L1M4 LINE L1 3785 3882 -2264 1450 177 129 43 chr3 181054296 181054668 -46469910 - L1ME2 LINE L1 -9 6155 5752 2018 196 40 5 chr3 181054697 181055101 -46469477 - MER65C LTR ERV1 -43 418 1 393 284 9 0 chr3 181055103 181055219 -46469359 - L1ME2 LINE L1 -428 5750 5634 1599 233 47 22 chr3 181055219 181055622 -46468956 - L1ME LINE L1 -430 5732 5320 2377 56 23 0 chr3 181055639 181055941 -46468637 - L1PA6 LINE L1 -1871 4275 3967 1653 62 12 1 chr3 181055932 181057687 -46466891 + L1PA6 LINE L1 4249 6150 -4 * 429 206 95 58 chr3 181057695 181057884 -46466694 - L1ME LINE L1 -845 5301 5106 357 271 55 34 chr3 181057877 181058113 -46466465 - L1ME LINE L1 -1483 4663 4423 * 428 352 50 14 chr3 181058154 181058574 -46466004 - L1ME LINE L1 -2054 4092 3658 1426 218 67 69 chr3 181058574 181059066 -46465512 + MER44D DNA MER2_type 2 547 -58 1736 139 10 37 chr3 181059122 181059417 -46465161 + AluSx SINE Alu 1 287 -25 37 0 0 0 chr3 181059417 181059454 -46465124 + AT_rich Low_complexity Low_complexity 1 37 0 348 305 42 0 chr3 181059832 181059950 -46464628 - L1ME1 LINE L1 -10 6156 6034 19876 158 42 42 chr3 181059991 181064022 -46460556 - L1PA11 LINE L1 0 7612 2799 2878 29 0 3 chr3 181064022 181064369 -46460209 + L1PA4 LINE L1 5809 6154 -1 19876 158 42 42 chr3 181064369 181065778 -46458800 - L1PA11 LINE L1 -4813 2799 1391 575 155 23 257 chr3 181065774 181066077 -46458501 - L1PA11 LINE L1 -7349 232 1 * 264 161 18 18 chr3 181066167 181066223 -46458355 - L1ME LINE L1 -567 5599 5544 1413 239 65 72 chr3 181066262 181066562 -46458016 - L1ME1 LINE L1 -273 5893 5597 1801 114 0 0 chr3 181066562 181066807 -46457771 - AluSx SINE Alu -17 295 51 1413 239 65 72 chr3 181066807 181067088 -46457490 - L1ME1 LINE L1 -569 5597 5316 1381 215 124 45 chr3 181067097 181067628 -46456950 - L1ME1 LINE L1 -4 6231 5659 20607 169 28 12 chr3 181067643 181070121 -46454457 - L1MA3 LINE L1 0 7724 5288 2433 66 0 13 chr3 181070121 181070425 -46454153 - AluY SINE Alu -11 300 1 20607 169 28 12 chr3 181070425 181071713 -46452865 - L1MA3 LINE L1 -2436 5288 4022 180 97 0 0 chr3 181071713 181071744 -46452834 + (TTTA)n Simple_repeat Simple_repeat 4 34 0 18159 68 6 8 chr3 181071744 181072400 -46452178 - L1PA6 LINE L1 -18 6136 5480 2165 96 0 3 chr3 181072400 181072692 -46451886 - AluY SINE Alu -20 291 1 18159 68 6 8 chr3 181072692 181075294 -46449284 - L1PA6 LINE L1 -674 5480 2893 20607 169 28 12 chr3 181075294 181079123 -46445455 - L1MA3 LINE L1 -3701 4023 11 1471 236 3 11 chr3 181079119 181079475 -46445103 - L1ME1 LINE L1 -560 5675 5323 * 3217 118 2 73 chr3 181079498 181080031 -46444547 + MER1A DNA MER1_type 35 529 0 914 249 48 15 chr3 181080050 181082597 -46441981 - L1ME1 LINE L1 -937 5278 2586 * 1461 287 87 34 chr3 181082595 181083277 -46441301 - L1ME1 LINE L1 -5627 769 52 2191 119 0 0 chr3 181083312 181083607 -46440971 + AluSq SINE Alu 1 295 -18 712 223 155 37 chr3 181083686 181084041 -46440537 - L1M4 LINE L1 -979 5167 4771 462 212 127 16 chr3 181084138 181084515 -46440063 - L1ME LINE L1 -2953 3127 2592 324 343 29 0 chr3 181084518 181084658 -46439920 - L1ME LINE L1 -4256 2005 1862 1599 183 0 53 chr3 181084705 181085027 -46439551 - AluJb SINE Alu -7 305 1 1187 268 76 40 chr3 181085028 181085918 -46438660 - L1ME LINE L1 -4725 1357 538 387 278 87 79 chr3 181086260 181086526 -46438052 - L1ME LINE L1 -5585 485 218 2150 95 0 0 chr3 181087482 181087755 -46436823 - AluSc SINE Alu -17 292 20 457 258 52 75 chr3 181090722 181090974 -46433604 - L1MC4 LINE L1 -8 8034 7789 186 192 0 0 chr3 181091795 181091847 -46432731 + CT-rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr3 181094570 181094592 -46429986 + AT_rich Low_complexity Low_complexity 1 22 0 10289 200 48 25 chr3 181094939 181095745 -46428833 - Cheshire DNA MER1_type 0 2420 1634 675 218 12 24 chr3 181095745 181095910 -46428668 - FRAM SINE Alu 0 166 4 10289 200 48 25 chr3 181095910 181097469 -46427109 - Cheshire DNA MER1_type -786 1634 1 382 342 59 0 chr3 181098355 181098507 -46426071 + L2 LINE L2 3112 3272 0 1241 312 50 74 chr3 181098552 181098599 -46425979 - L2 LINE L2 -555 2759 2712 2212 104 3 3 chr3 181098599 181098908 -46425670 - AluSx SINE Alu -3 309 1 1241 312 50 74 chr3 181098908 181099790 -46424788 - L2 LINE L2 -602 2712 1853 807 185 6 46 chr3 181099865 181100038 -46424540 + MER76 LTR ERV 1 166 -522 182 250 0 39 chr3 181100486 181100538 -46424040 - MIR SINE MIR -27 235 186 494 299 126 25 chr3 181101529 181101846 -46422732 - L1MC/D LINE L1 -597 5583 5476 10747 29 1 0 chr3 181101851 181103908 -46420670 - L1PA3 LINE L1 0 6155 4100 457 288 26 13 chr3 181104259 181104412 -46420166 + MIR SINE MIR 74 228 -34 2030 107 0 0 chr3 181104816 181105088 -46419490 - AluY SINE Alu -39 272 1 489 302 94 8 chr3 181105479 181105850 -46418728 + L1ME4a LINE L1 5701 6103 -18 450 287 105 33 chr3 181105852 181106033 -46418545 - MER91A DNA MER1_type -1 195 2 29 0 0 0 chr3 181106043 181106072 -46418506 + AT_rich Low_complexity Low_complexity 1 29 0 353 286 114 21 chr3 181106335 181106475 -46418103 + MER117 DNA MER1_type 5 157 -40 1377 221 68 19 chr3 181106545 181106870 -46417708 + MER2 DNA MER2_type 4 344 0 339 25 0 0 chr3 181107876 181107916 -46416662 + (TCCA)n Simple_repeat Simple_repeat 1 40 0 2119 74 0 18 chr3 181108222 181108531 -46416047 - AluY SINE Alu 0 305 2 1389 191 46 25 chr3 181108869 181109152 -46415426 + AluJo SINE Alu 1 289 -23 21 36 0 0 chr3 181109228 181109256 -46415322 + AT_rich Low_complexity Low_complexity 1 28 0 347 360 55 20 chr3 181110749 181110949 -46413629 - MIR SINE MIR -55 207 1 189 171 0 0 chr3 181111247 181111282 -46413296 + (TATG)n Simple_repeat Simple_repeat 1 35 0 341 230 62 62 chr3 181111296 181111474 -46413104 - L1MEd LINE L1 -3786 2343 2166 594 300 71 39 chr3 181111671 181112355 -46412223 - L1MEd LINE L1 -838 1652 860 467 317 49 65 chr3 181113342 181113648 -46410930 - L2 LINE L2 -556 2758 2458 1003 266 82 0 chr3 181113765 181114069 -46410509 + MER46C DNA MER2_type 9 337 -1 240 306 126 0 chr3 181114139 181114250 -46410328 + L1MC/D LINE L1 5799 5923 -1885 264 59 0 0 chr3 181114278 181114312 -46410266 + (CA)n Simple_repeat Simple_repeat 2 35 0 186 133 0 0 chr3 181114388 181114418 -46410160 + (TG)n Simple_repeat Simple_repeat 1 30 0 21 0 0 0 chr3 181114584 181114605 -46409973 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 181116212 181116243 -46408335 + AT_rich Low_complexity Low_complexity 1 31 0 1827 142 4 11 chr3 181117266 181117591 -46406987 - AluSx SINE Alu 0 326 4 27 29 0 0 chr3 181117614 181117648 -46406930 + AT_rich Low_complexity Low_complexity 1 34 0 21 36 0 0 chr3 181117940 181117968 -46406610 + AT_rich Low_complexity Low_complexity 1 28 0 198 209 0 0 chr3 181118278 181118321 -46406257 + (TCCA)n Simple_repeat Simple_repeat 3 45 0 22 35 0 0 chr3 181118607 181118636 -46405942 + AT_rich Low_complexity Low_complexity 1 29 0 1003 201 108 8 chr3 181119231 181119499 -46405079 - L1MC4 LINE L1 -820 7222 6928 688 262 75 23 chr3 181119496 181119920 -46404658 - L1MC4a LINE L1 -1313 6495 5976 * 206 209 0 58 chr3 181119933 181120019 -46404559 + T-rich Low_complexity Low_complexity 4 84 0 873 217 159 0 chr3 181120078 181120285 -46404293 - LTR40a LTR ERVL -14 505 266 22 0 0 0 chr3 181120509 181120531 -46404047 + AT_rich Low_complexity Low_complexity 1 22 0 1987 134 3 16 chr3 181120609 181120923 -46403655 - AluSx SINE Alu 0 312 3 466 270 176 7 chr3 181121413 181121561 -46403017 - MER5A DNA MER1_type 0 189 17 304 321 28 9 chr3 181125215 181125324 -46399254 + MIR3 SINE MIR 87 197 -11 21 36 0 0 chr3 181128105 181128133 -46396445 + AT_rich Low_complexity Low_complexity 1 28 0 29 28 0 0 chr3 181129384 181129420 -46395158 + AT_rich Low_complexity Low_complexity 1 36 0 1734 136 21 0 chr3 181129549 181129836 -46394742 + L1MA9 LINE L1 6020 6312 0 274 304 69 29 chr3 181130316 181130418 -46394160 - L2 LINE L2 -5 3267 3162 202 348 49 39 chr3 181130648 181130852 -46393726 + L2 LINE L2 2449 2654 -660 247 250 200 30 chr3 181131202 181131302 -46393276 + L2 LINE L2 3197 3313 0 22 35 0 0 chr3 181131349 181131378 -46393200 + AT_rich Low_complexity Low_complexity 1 29 0 2120 106 0 7 chr3 181132042 181132352 -46392226 - AluSq SINE Alu 0 308 1 1516 105 0 71 chr3 181132768 181133007 -46391571 + AluSg/x SINE Alu 76 297 -15 295 316 0 13 chr3 181134038 181134117 -46390461 - MIR SINE MIR -149 113 36 2103 125 7 3 chr3 181134126 181134431 -46390147 - AluSx SINE Alu -6 306 1 777 228 16 16 chr3 181135349 181135533 -46389045 + MIR SINE MIR 71 254 -8 296 358 90 0 chr3 181135548 181135682 -46388896 + MIR SINE MIR 1 146 -116 333 0 0 0 chr3 181135683 181135720 -46388858 + (TAA)n Simple_repeat Simple_repeat 2 38 0 26 0 0 0 chr3 181135734 181135760 -46388818 + AT_rich Low_complexity Low_complexity 1 26 0 258 240 183 10 chr3 181135778 181135882 -46388696 + MIR SINE MIR 139 260 -2 12776 72 11 7 chr3 181136022 181138559 -46386019 - L1PA7 LINE L1 -3 6151 3607 221 284 25 12 chr3 181139964 181140045 -46384533 - MIR SINE MIR 0 262 181 24 32 0 0 chr3 181140109 181140140 -46384438 + AT_rich Low_complexity Low_complexity 1 31 0 2881 230 54 38 chr3 181141131 181142116 -46382462 - L1ME1 LINE L1 -12 6154 5170 4742 221 68 50 chr3 181142119 181144512 -46380066 - L1ME1 LINE L1 -16 6219 3808 22 35 0 0 chr3 181145657 181145686 -46378892 + AT_rich Low_complexity Low_complexity 1 29 0 378 0 0 0 chr3 181146031 181146073 -46378505 + (TTA)n Simple_repeat Simple_repeat 1 42 0 1249 158 71 60 chr3 181146078 181146344 -46378234 - AluJb SINE Alu -23 289 21 290 217 14 43 chr3 181146717 181146786 -46377792 - L2 LINE L2 -1 3312 3246 241 296 133 0 chr3 181146790 181146888 -46377690 - L1ME1 LINE L1 -5915 481 371 198 171 0 0 chr3 181146928 181146969 -46377609 + CT-rich Low_complexity Low_complexity 4 44 0 357 82 0 0 chr3 181147009 181147058 -46377520 + (TCCC)n Simple_repeat Simple_repeat 4 52 0 1739 111 118 15 chr3 181147062 181147333 -46377245 - AluSg SINE Alu -11 299 1 696 278 33 83 chr3 181147334 181147694 -46376884 - L1ME1 LINE L1 -6018 378 37 478 234 19 19 chr3 181147704 181147862 -46376716 - L1MEc LINE L1 -3362 2853 2696 322 266 58 17 chr3 181147873 181148046 -46376532 - L1MEc LINE L1 -4810 1586 1407 900 180 0 0 chr3 181148168 181148318 -46376260 + MSTB LTR MaLR 1 150 -276 1642 122 3 27 chr3 181148420 181148716 -46375862 - L1P5 LINE L1 -575 5581 5293 2172 128 3 0 chr3 181148969 181149273 -46375305 - AluSx SINE Alu -5 307 3 1806 171 17 0 chr3 181149458 181149751 -46374827 - AluJb SINE Alu -13 299 2 802 187 0 0 chr3 181149753 181149892 -46374686 - MLT1B LTR MaLR -59 331 193 269 113 57 9 chr3 181151136 181151242 -46373336 + (TA)n Simple_repeat Simple_repeat 2 112 0 1701 188 0 13 chr3 181151267 181151571 -46373007 + AluJo SINE Alu 1 300 -12 493 295 0 0 chr3 181151982 181152104 -46372474 + Charlie8 DNA MER1_type 141 262 -2155 307 394 89 4 chr3 181152344 181152613 -46371965 + L2 LINE L2 2469 2760 -554 556 244 127 34 chr3 181152620 181152825 -46371753 - MER58A DNA MER1_type 0 224 1 2328 86 23 0 chr3 181153266 181153568 -46371010 - AluSc SINE Alu 0 309 1 373 235 25 8 chr3 181154430 181154549 -46370029 - L1M4 LINE L1 -982 5164 5044 27 29 0 0 chr3 181154629 181154663 -46369915 + AT_rich Low_complexity Low_complexity 1 34 0 401 240 116 0 chr3 181155191 181155312 -46369266 - MER44D DNA MER2_type 0 605 471 1383 103 79 48 chr3 181155338 181155590 -46368988 - MER44D DNA MER2_type -79 530 1 22 35 0 0 chr3 181155998 181156027 -46368551 + AT_rich Low_complexity Low_complexity 1 29 0 24 77 0 0 chr3 181156224 181156276 -46368302 + AT_rich Low_complexity Low_complexity 1 52 0 306 286 64 53 chr3 181156513 181156684 -46367894 - L1ME LINE L1 -378 5784 5612 313 98 279 0 chr3 181156694 181156755 -46367823 + MADE1 DNA Mariner 3 80 0 223 284 39 20 chr3 181157752 181157854 -46366724 + L2 LINE L2 2550 2653 -661 1562 159 24 17 chr3 181158010 181158306 -46366272 - L1MB5 LINE L1 -8 6166 5869 961 215 34 15 chr3 181158317 181158334 -46366244 - L1MB5 LINE L1 -410 5764 5749 279 54 0 0 chr3 181158334 181158371 -46366207 + (CA)n Simple_repeat Simple_repeat 2 38 0 961 215 34 15 chr3 181158371 181158619 -46365959 - L1MB5 LINE L1 -425 5749 5519 272 320 109 0 chr3 181158683 181158811 -46365767 + MIR SINE MIR 108 249 -13 251 138 17 35 chr3 181158861 181158919 -46365659 - MER52C LTR ERV1 0 1278 1222 * 4560 188 92 131 chr3 181158909 181160395 -46364183 - MER52A LTR ERV1 -241 1514 86 1830 149 3 10 chr3 181161487 181161775 -46362803 + AluJb SINE Alu 11 296 -16 292 316 0 13 chr3 181162592 181162671 -46361907 - MIR SINE MIR -149 113 36 2135 125 7 3 chr3 181162680 181162985 -46361593 - AluSx SINE Alu -6 306 1 771 228 16 16 chr3 181163903 181164087 -46360491 + MIR SINE MIR 71 254 -8 296 358 90 0 chr3 181164102 181164236 -46360342 + MIR SINE MIR 1 146 -116 306 0 0 0 chr3 181164237 181164271 -46360307 + (TAA)n Simple_repeat Simple_repeat 2 35 0 26 0 0 0 chr3 181164285 181164311 -46360267 + AT_rich Low_complexity Low_complexity 1 26 0 248 240 183 10 chr3 181164329 181164433 -46360145 + MIR SINE MIR 139 260 -2 41316 61 5 3 chr3 181164573 181170702 -46353876 - L1PA7 LINE L1 -3 6151 12 340 286 9 0 chr3 181170718 181170823 -46353755 - L1ME LINE L1 -437 5684 5579 392 313 88 18 chr3 181170877 181171161 -46353417 - L1ME LINE L1 -297 5824 5521 2079 120 40 72 chr3 181171169 181171545 -46353033 - THE1B LTR MaLR 0 364 1 326 221 13 0 chr3 181171950 181172027 -46352551 - MER116 DNA Mariner 0 80 3 317 249 166 36 chr3 181173095 181173288 -46351290 - L1ME4a LINE L1 -151 5970 5753 2116 88 0 0 chr3 181173295 181173568 -46351010 - AluY SINE Alu -1 310 38 22 0 0 0 chr3 181173773 181173795 -46350783 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 181174689 181174710 -46349868 + AT_rich Low_complexity Low_complexity 1 21 0 1983 116 32 3 chr3 181174823 181174985 -46349593 - AluSc SINE Alu -16 293 118 407 19 19 0 chr3 181174985 181175037 -46349541 + (TG)n Simple_repeat Simple_repeat 2 54 0 1983 116 32 3 chr3 181175037 181175159 -46349419 - AluSc SINE Alu -191 118 1 435 228 189 8 chr3 181176007 181176134 -46348444 - MER58B DNA MER1_type 0 341 192 181 208 21 42 chr3 181176845 181176893 -46347685 - L2 LINE L2 -93 3179 3133 329 286 218 36 chr3 181179108 181179328 -46345250 + MIR SINE MIR 2 261 -1 2808 25 0 0 chr3 181179350 181179664 -46344914 + AluYb8 SINE Alu 1 314 -4 390 367 60 0 chr3 181180026 181180176 -46344402 - L2 LINE L2 -12 3260 3102 181 326 0 0 chr3 181180275 181180318 -46344260 - L2 LINE L2 -226 3046 3004 2679 68 11 6 chr3 181180382 181180600 -46343978 + THE1A LTR MaLR 1 223 -132 2357 107 0 0 chr3 181180600 181180910 -46343668 + AluSg SINE Alu 1 310 0 2679 68 11 6 chr3 181180910 181181044 -46343534 + THE1A LTR MaLR 223 355 0 11066 100 23 1 chr3 181181044 181182589 -46341989 + THE1A-int LTR MaLR 1 1580 0 2706 85 3 0 chr3 181182589 181182943 -46341635 + THE1A LTR MaLR 1 355 0 5198 239 135 40 chr3 181183024 181184334 -46340244 + L1ME1 LINE L1 20 1204 -5192 1808 148 64 0 chr3 181184334 181184617 -46339961 + AluSx SINE Alu 1 301 -11 5198 239 135 40 chr3 181184617 181185276 -46339302 + L1ME1 LINE L1 1204 1799 -4597 2125 99 3 30 chr3 181185276 181185580 -46338998 + AluSx SINE Alu 1 296 -16 5198 239 135 40 chr3 181185580 181185797 -46338781 + L1ME1 LINE L1 1799 2415 -3981 878 256 64 27 chr3 181185779 181186107 -46338471 + L1ME1 LINE L1 4576 4915 -1300 * 256 143 36 0 chr3 181186115 181186171 -46338407 + (TA)n Simple_repeat Simple_repeat 1 58 0 934 239 14 39 chr3 181186198 181186482 -46338096 + L1ME1 LINE L1 4904 5180 -1035 830 226 0 11 chr3 181186499 181186680 -46337898 + FRAM SINE Alu 1 173 -3 2465 217 54 5 chr3 181186761 181187351 -46337227 + L1ME1 LINE L1 5340 5958 -277 291 180 0 0 chr3 181187348 181187409 -46337169 + L1MA10 LINE L1 6272 6332 -2 * 345 302 70 23 chr3 181187507 181187636 -46336942 + L2 LINE L2 3137 3271 -1 1520 163 27 47 chr3 181187888 181188189 -46336389 - AluJo SINE Alu -13 299 5 23 0 0 0 chr3 181188208 181188231 -46336347 + AT_rich Low_complexity Low_complexity 1 23 0 985 113 0 0 chr3 181188232 181188374 -46336204 - L1MA2 LINE L1 -4 6300 6159 23 0 0 0 chr3 181188906 181188929 -46335649 + AT_rich Low_complexity Low_complexity 1 23 0 6826 139 16 9 chr3 181188929 181190911 -46333667 - L1PA12 LINE L1 -10 6158 4172 5123 170 6 8 chr3 181190912 181191828 -46332750 - L1PA12 LINE L1 -1903 4243 3330 7408 34 6 0 chr3 181191955 181193261 -46331317 + L1PA5 LINE L1 4841 6151 -3 311 267 112 44 chr3 181193424 181193630 -46330948 + L1ME4a LINE L1 5793 6012 -109 350 279 28 48 chr3 181193644 181193828 -46330750 + L1M4b LINE L1 22 1015 -5932 1112 274 32 36 chr3 181194149 181195084 -46329494 + L1M4b LINE L1 1266 2158 -4801 709 154 73 29 chr3 181195108 181195244 -46329334 + AluJo SINE Alu 9 150 -162 928 259 101 35 chr3 181195274 181195489 -46329089 + L1M4b LINE L1 2341 2540 -4598 243 0 0 0 chr3 181195489 181195516 -46329062 + (TG)n Simple_repeat Simple_repeat 2 28 0 928 259 101 35 chr3 181195516 181195756 -46328822 + L1M4b LINE L1 2540 2826 -4312 589 75 0 0 chr3 181195784 181195864 -46328714 + MADE1 DNA Mariner 1 80 0 486 120 0 0 chr3 181196162 181196237 -46328341 + (GAA)n Simple_repeat Simple_repeat 2 76 0 186 324 14 27 chr3 181196819 181196893 -46327685 + MER5B DNA MER1_type 106 178 0 1964 126 52 25 chr3 181198009 181198374 -46326204 - THE1C LTR MaLR 0 375 1 321 137 0 0 chr3 181199109 181199160 -46325418 - AluJb SINE Alu -178 124 74 1346 121 58 27 chr3 181199316 181199435 -46325143 + MER30 DNA MER1_type 1 115 -115 261 57 0 0 chr3 181199435 181199470 -46325108 + (CA)n Simple_repeat Simple_repeat 2 36 0 1346 121 58 27 chr3 181199470 181199573 -46325005 + MER30 DNA MER1_type 115 230 0 1788 178 0 3 chr3 181199628 181199926 -46324652 + AluJo SINE Alu 1 297 -15 2049 130 0 3 chr3 181199958 181200265 -46324313 + AluJb SINE Alu 1 306 -6 2635 26 7 0 chr3 181200745 181201049 -46323529 + AluY SINE Alu 2 307 -4 227 186 0 34 chr3 181201283 181201342 -46323236 + G-rich Low_complexity Low_complexity 2 58 0 1410 205 46 3 chr3 181201703 181201986 -46322592 + AluJo SINE Alu 1 295 -17 2165 115 0 0 chr3 181203007 181203303 -46321275 - AluSx SINE Alu -16 296 1 588 295 26 6 chr3 181203624 181203780 -46320798 + MIR SINE MIR 1 159 -103 181 270 0 0 chr3 181203819 181203856 -46320722 + MIR SINE MIR 18 54 -208 654 304 0 0 chr3 181204147 181204308 -46320270 - AluSg/x SINE Alu -16 296 136 266 347 7 28 chr3 181204309 181204453 -46320125 + CT-rich Low_complexity Low_complexity 1 141 0 * 271 367 0 0 chr3 181204412 181204540 -46320038 + C-rich Low_complexity Low_complexity 1 128 0 321 250 60 77 chr3 181254607 181254775 -46269803 + HAL1 LINE L1 876 1040 -1467 1943 131 75 16 chr3 181254923 181255244 -46269334 + Tigger1 DNA MER2_type 2079 2418 0 369 224 13 0 chr3 181255446 181255522 -46269056 - MER5A DNA MER1_type -111 78 2 2048 136 7 0 chr3 181256158 181256466 -46268112 - AluSq SINE Alu -3 310 1 24 67 0 0 chr3 181256588 181256633 -46267945 + AT_rich Low_complexity Low_complexity 1 45 0 1228 76 0 0 chr3 181256994 181257152 -46267426 - L1PA8 LINE L1 -13 6159 6002 355 99 0 111 chr3 181257290 181257371 -46267207 - L1PA11 LINE L1 0 6174 6103 313 288 92 39 chr3 181257706 181257859 -46266719 - MIR SINE MIR -2 260 100 21 36 0 0 chr3 181258253 181258281 -46266297 + AT_rich Low_complexity Low_complexity 1 28 0 13984 185 19 19 chr3 181259718 181263359 -46261219 + L1PA15 LINE L1 2357 5995 -170 933 101 0 0 chr3 181263460 181263589 -46260989 + L1PA15 LINE L1 6024 6152 -13 568 323 6 0 chr3 181264054 181264218 -46260360 - MIR SINE MIR 0 262 98 347 263 54 55 chr3 181264726 181264915 -46259663 + L1ME LINE L1 5575 5778 -343 287 293 55 61 chr3 181264925 181265089 -46259489 + L2 LINE L2 2873 3035 -237 231 88 0 0 chr3 181265679 181265713 -46258865 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 27 0 0 0 chr3 181266114 181266141 -46258437 + AT_rich Low_complexity Low_complexity 1 27 0 434 299 15 30 chr3 181272206 181272340 -46252238 + MIR SINE MIR 21 152 -56 2146 85 18 47 chr3 181272921 181273028 -46251550 + L1PA13 LINE L1 5830 5939 -224 2056 121 0 3 chr3 181273028 181273343 -46251235 + AluSx SINE Alu 1 314 0 2146 85 18 47 chr3 181273343 181273573 -46251005 + L1PA13 LINE L1 5939 6159 -4 570 304 16 16 chr3 181273744 181273938 -46250640 + L2 LINE L2 3100 3293 -20 210 300 12 25 chr3 181274123 181274203 -46250375 + L2 LINE L2 2708 2786 -528 357 291 120 86 chr3 181274563 181274914 -46249664 + L2 LINE L2 2936 3298 -15 198 296 0 19 chr3 181274866 181274920 -46249658 + MIR SINE MIR 206 258 -4 * 22 35 0 0 chr3 181275091 181275120 -46249458 + AT_rich Low_complexity Low_complexity 1 29 0 715 269 29 21 chr3 181275441 181275683 -46248895 - L1ME LINE L1 -454 5708 5465 1000 199 0 0 chr3 181275701 181275877 -46248701 - FRAM SINE Alu 0 176 1 431 234 40 23 chr3 181275881 181276056 -46248522 - L1ME LINE L1 -731 5431 5254 223 319 43 32 chr3 181276587 181276681 -46247897 + L2 LINE L2 2977 3071 -201 620 225 16 0 chr3 181276870 181276999 -46247579 + FLAM_C SINE Alu 3 133 -10 281 136 0 0 chr3 181276999 181277058 -46247520 - L1P LINE L1 -2998 3148 3090 5158 120 3 0 chr3 181277062 181277822 -46246756 + L1P LINE L1 4517 5278 -868 6287 148 7 7 chr3 181277927 181278959 -46245619 - Tigger1 DNA MER2_type -1237 1181 150 7121 49 5 0 chr3 181278959 181280471 -46244107 + L1PA5 LINE L1 4616 6132 -22 289 270 165 10 chr3 181280509 181280709 -46243869 + L1M4 LINE L1 2680 2910 -3236 238 281 47 0 chr3 181280793 181280857 -46243721 + MER5A DNA MER1_type 123 189 0 22 0 0 0 chr3 181281420 181281442 -46243136 + AT_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr3 181282172 181282202 -46242376 + AT_rich Low_complexity Low_complexity 1 30 0 234 274 27 5 chr3 181282392 181282510 -46242068 + MIR SINE MIR 59 233 -29 452 269 55 0 chr3 181284223 181284368 -46240210 + MER103 DNA DNA 13 165 -1 598 28 0 0 chr3 181284456 181284528 -46240050 - L1PA5 LINE L1 -5 6149 6078 181 231 0 0 chr3 181284815 181284854 -46239724 + L2 LINE L2 3019 3057 -256 25 51 0 0 chr3 181285630 181285669 -46238909 + AT_rich Low_complexity Low_complexity 1 39 0 305 205 92 147 chr3 181287756 181288189 -46236389 - L1ME4a LINE L1 -141 5980 5576 1678 153 50 7 chr3 181288209 181288490 -46236088 - AluJo SINE Alu -14 298 6 472 260 106 77 chr3 181288559 181289063 -46235515 - HAL1 LINE L1 -938 1569 1198 710 213 65 24 chr3 181289066 181289235 -46235343 + MIR SINE MIR 77 252 -10 305 238 36 156 chr3 181289312 181289614 -46234964 - HAL1 LINE L1 -1417 1090 825 2412 90 0 0 chr3 181290524 181290834 -46233744 + AluSx SINE Alu 1 310 -2 211 333 135 22 chr3 181291110 181291332 -46233246 - L2 LINE L2 -222 3050 2804 22 0 0 0 chr3 181291335 181291357 -46233221 + AT_rich Low_complexity Low_complexity 1 22 0 251 330 134 10 chr3 181291503 181291600 -46232978 - L2 LINE L2 0 3272 3164 408 336 90 48 chr3 181291632 181292010 -46232568 - L2 LINE L2 -665 2649 2256 258 156 0 0 chr3 181292183 181292247 -46232331 + T-rich Low_complexity Low_complexity 1 64 0 294 118 78 0 chr3 181292826 181292877 -46231701 + MADE1 DNA Mariner 2 56 -24 312 120 0 0 chr3 181292894 181292944 -46231634 + MADE1 DNA Mariner 31 80 0 222 159 0 143 chr3 181297465 181297528 -46227050 + L2 LINE L2 3219 3272 0 188 383 109 10 chr3 181298054 181298255 -46226323 - L3 LINE CR1 -1126 451 231 575 246 93 22 chr3 181299208 181299391 -46225187 - MIR SINE MIR -34 228 33 432 255 143 25 chr3 181301099 181301260 -46223318 + MIR SINE MIR 33 212 -50 1439 162 13 0 chr3 181301262 181301490 -46223088 + AluJo SINE Alu 1 231 -81 372 325 16 37 chr3 181301651 181301842 -46222736 - L2 LINE L2 -1 3312 3126 230 225 183 0 chr3 181301854 181301925 -46222653 + MIR SINE MIR 81 164 -98 2347 62 0 0 chr3 181302427 181302715 -46221863 - AluY SINE Alu -23 288 1 456 258 291 0 chr3 181302969 181303151 -46221427 + MIR SINE MIR 3 237 -25 24 32 0 0 chr3 181303316 181303347 -46221231 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr3 181303760 181303789 -46220789 + AT_rich Low_complexity Low_complexity 1 29 0 2322 101 21 3 chr3 181304650 181304987 -46219591 + L1PA10 LINE L1 5815 6157 -11 917 188 0 12 chr3 181305002 181305162 -46219416 + FRAM SINE Alu 1 157 -19 536 270 222 0 chr3 181305859 181306044 -46218534 + MIR SINE MIR 28 253 -9 22 35 0 0 chr3 181306211 181306240 -46218338 + AT_rich Low_complexity Low_complexity 1 29 0 206 222 0 0 chr3 181306606 181306651 -46217927 + CT-rich Low_complexity Low_complexity 4 48 0 1614 268 66 12 chr3 181306674 181307197 -46217381 + MLT1G1 LTR MaLR 1 590 -5 370 304 56 8 chr3 181307537 181307662 -46216916 - MER117 DNA MER1_type -44 153 23 239 283 75 25 chr3 181308041 181308161 -46216417 - MIR SINE MIR -6 256 131 21 57 0 0 chr3 181308175 181308210 -46216368 + AT_rich Low_complexity Low_complexity 1 35 0 256 179 15 45 chr3 181310395 181310462 -46214116 + CT-rich Low_complexity Low_complexity 4 68 0 209 349 145 0 chr3 181310598 181310681 -46213897 - L2 LINE L2 -10 3262 3168 719 257 6 17 chr3 181310887 181311062 -46213516 + MIR3 SINE MIR 33 205 -3 410 200 182 18 chr3 181311231 181311341 -46213237 - L2 LINE L2 -15 3298 3171 482 234 0 21 chr3 181311479 181311573 -46213005 + MER81 DNA DNA 18 109 -5 328 312 62 97 chr3 181311582 181311983 -46212595 - L2 LINE L2 -398 2916 2530 198 0 0 0 chr3 181312498 181312520 -46212058 + (TTA)n Simple_repeat Simple_repeat 3 24 0 24294 27 3 3 chr3 181312520 181316225 -46208353 - L1PA3 LINE L1 -18 6137 2435 491 247 85 38 chr3 181316518 181316834 -46207744 + L1MB1 LINE L1 5004 5334 -812 268 316 93 31 chr3 181317086 181317279 -46207299 - L2 LINE L2 -1372 1942 1738 350 308 34 0 chr3 181317671 181317817 -46206761 + L1MC4a LINE L1 4459 4609 -1537 268 287 86 6 chr3 181318147 181318321 -46206257 - L1ME LINE L1 -225 5896 5709 828 257 31 43 chr3 181318806 181319063 -46205515 + MIR SINE MIR 6 259 -3 325 333 20 7 chr3 181319438 181319585 -46204993 + L1MC4a LINE L1 5749 5897 -1911 1732 180 16 21 chr3 181319882 181320265 -46204313 + L1MB1 LINE L1 5785 6165 -3 291 28 0 0 chr3 181320284 181320320 -46204258 + (TAAAA)n Simple_repeat Simple_repeat 3 38 0 186 281 0 0 chr3 181320350 181320414 -46204164 + (TAG)n Simple_repeat Simple_repeat 1 64 0 312 211 83 37 chr3 181320481 181320590 -46203988 - MER117 DNA MER1_type -52 145 32 272 333 135 24 chr3 181320787 181320913 -46203665 - L2 LINE L2 -9 3263 3124 306 264 0 58 chr3 181320949 181321036 -46203542 + L2 LINE L2 3227 3308 -5 629 244 25 0 chr3 181321137 181321297 -46203281 - MER103 DNA DNA -1 165 2 22 0 0 0 chr3 181321872 181321894 -46202684 + AT_rich Low_complexity Low_complexity 1 22 0 217 288 51 0 chr3 181324174 181324233 -46200345 - MIR3 SINE MIR -142 66 5 21 0 0 0 chr3 181324508 181324529 -46200049 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 181325345 181325369 -46199209 + AT_rich Low_complexity Low_complexity 1 24 0 202 315 162 9 chr3 181326179 181326290 -46198288 - L2 LINE L2 -9 3263 3136 21 0 0 0 chr3 181326480 181326501 -46198077 + AT_rich Low_complexity Low_complexity 1 21 0 210 277 0 0 chr3 181326550 181326597 -46197981 + (CATA)n Simple_repeat Simple_repeat 3 49 0 896 266 8 34 chr3 181326850 181327087 -46197491 - MIR SINE MIR -27 235 5 12474 58 5 2 chr3 181327496 181329401 -46195177 + L1P2 LINE L1 3747 5653 -502 302 306 210 18 chr3 181330276 181330495 -46194083 + MIR SINE MIR 2 262 0 22 0 0 0 chr3 181331143 181331165 -46193413 + AT_rich Low_complexity Low_complexity 1 22 0 249 269 229 25 chr3 181331413 181331614 -46192964 + MER112 DNA MER1_type 17 258 -2 2406 30 0 3 chr3 181331678 181331979 -46192599 - L1PA4 LINE L1 -772 5374 5075 * 3619 32 2 2 chr3 181331970 181332408 -46192170 + L1PA4 LINE L1 5392 5829 -326 553 243 158 0 chr3 181332545 181332697 -46191881 + L1MDa LINE L1 16 191 -6349 446 273 123 45 chr3 181333108 181333672 -46190906 - L1ME4a LINE L1 -178 5943 5352 816 305 68 14 chr3 181334433 181334872 -46189706 + LTR16B LTR ERVL 2 464 0 1918 110 51 57 chr3 181335308 181335592 -46188986 - L1MA6 LINE L1 -45 6255 5972 2071 96 17 0 chr3 181335592 181335883 -46188695 - AluSx SINE Alu -12 300 5 1918 110 51 57 chr3 181335883 181335952 -46188626 - L1MA6 LINE L1 -328 5972 5904 1147 158 5 16 chr3 181336109 181336299 -46188279 - AluJo SINE Alu -124 188 1 4311 27 2 2 chr3 181336331 181336846 -46187732 + L1PA4 LINE L1 5640 6154 -1 2863 148 39 14 chr3 181337354 181337926 -46186652 - Tigger1 DNA MER2_type -5 2413 1717 1639 175 0 34 chr3 181338106 181338398 -46186180 - AluJb SINE Alu -28 284 3 466 175 147 56 chr3 181338412 181338555 -46186023 - L2 LINE L2 0 3313 3158 10403 185 44 65 chr3 181338560 181338901 -46185677 + Tigger1 DNA MER2_type 1 348 -2070 213 39 0 0 chr3 181338901 181338927 -46185651 + (TC)n Simple_repeat Simple_repeat 2 27 0 10403 185 44 65 chr3 181338927 181341056 -46183522 + Tigger1 DNA MER2_type 348 2418 0 261 0 0 0 chr3 181341129 181341158 -46183420 + (TA)n Simple_repeat Simple_repeat 2 30 0 358 163 0 62 chr3 181341333 181341413 -46183165 + AluJ/FRAM SINE Alu 227 301 -1 355 248 83 18 chr3 181341559 181341668 -46182910 - L1 LINE L1 -2154 3992 3877 222 140 88 0 chr3 181342576 181342633 -46181945 + (TATAA)n Simple_repeat Simple_repeat 3 64 0 279 282 13 0 chr3 181345191 181345269 -46179309 + L2 LINE L2 3186 3264 -49 21 71 0 0 chr3 181345448 181345490 -46179088 + AT_rich Low_complexity Low_complexity 1 42 0 209 250 89 18 chr3 181345856 181345912 -46178666 + L3b LINE CR1 1500 1559 -24 27 29 0 0 chr3 181348612 181348646 -46175932 + AT_rich Low_complexity Low_complexity 1 34 0 218 430 47 0 chr3 181349706 181349792 -46174786 - L2 LINE L2 -42 3230 3141 502 261 93 2 chr3 181350059 181350229 -46174349 - MIR SINE MIR -63 145 16 309 303 71 39 chr3 181350308 181350463 -46174115 + MER5B DNA MER1_type 4 163 -15 2265 230 47 42 chr3 181350685 181351002 -46173576 + HsTC2a DNA MER2_type 1 315 -1585 2180 107 19 7 chr3 181351002 181351311 -46173267 + AluSq SINE Alu 1 313 0 2265 230 47 42 chr3 181351311 181351732 -46172846 + HsTC2a DNA MER2_type 315 743 -1 26 0 0 0 chr3 181352893 181352919 -46171659 + AT_rich Low_complexity Low_complexity 1 26 0 2270 106 0 0 chr3 181353427 181353730 -46170848 - AluY SINE Alu -8 303 1 198 91 0 0 chr3 181354788 181354821 -46169757 + (GTTTG)n Simple_repeat Simple_repeat 2 34 0 1914 138 43 30 chr3 181355293 181355663 -46168915 - THE1C LTR MaLR 0 375 1 268 254 0 48 chr3 181356078 181356141 -46168437 - MIR3 SINE MIR -9 199 140 928 244 89 14 chr3 181356889 181357286 -46167292 - MER57B LTR ERV1 0 403 4 4471 143 59 18 chr3 181357432 181358276 -46166302 - Tigger3(Golem) DNA MER2_type -2 3027 2149 1551 146 36 36 chr3 181358276 181358557 -46166021 - Tigger3(Golem) DNA MER2_type -2728 301 21 219 103 0 0 chr3 181358620 181358659 -46165919 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2023 121 4 4 chr3 181358660 181358940 -46165638 - AluSx SINE Alu -32 280 1 1083 199 42 5 chr3 181359048 181359264 -46165314 + MER58A DNA MER1_type 1 224 0 220 250 17 0 chr3 181359319 181359379 -46165199 + (TA)n Simple_repeat Simple_repeat 1 61 0 793 181 111 12 chr3 181359636 181359807 -46164771 - MER5A DNA MER1_type -1 188 1 24 67 0 0 chr3 181360351 181360396 -46164182 + AT_rich Low_complexity Low_complexity 1 45 0 1337 60 25 15 chr3 181360396 181360597 -46163981 - L1MB2 LINE L1 -1 6170 5968 14630 194 63 16 chr3 181360611 181360796 -46163782 - L1PB1 LINE L1 -3 6864 6689 2327 85 0 3 chr3 181360796 181361089 -46163489 - AluSc SINE Alu -17 292 1 14630 194 63 16 chr3 181361089 181361764 -46162814 - L1PB1 LINE L1 -178 6689 6047 198 0 0 0 chr3 181361764 181361786 -46162792 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 14630 194 63 16 chr3 181361786 181362450 -46162128 - L1PB1 LINE L1 -820 6047 5416 2340 82 7 0 chr3 181362450 181362742 -46161836 + AluY SINE Alu 1 294 -17 14630 194 63 16 chr3 181362742 181367761 -46156817 - L1PB1 LINE L1 -1451 5416 6 342 249 86 31 chr3 181367923 181368072 -46156506 + MIR SINE MIR 49 212 -50 216 327 112 9 chr3 181368911 181369018 -46155560 - L2 LINE L2 -222 3050 2933 199 356 33 61 chr3 181369078 181369258 -46155320 - L2 LINE L2 -235 3037 2863 1259 182 3 31 chr3 181369369 181369660 -46154918 + L1MA4 LINE L1 5053 5335 -811 426 235 0 41 chr3 181369661 181369759 -46154819 + FLAM_C SINE Alu 14 107 -36 30 0 0 0 chr3 181369759 181369789 -46154789 + AT_rich Low_complexity Low_complexity 1 30 0 1921 144 6 9 chr3 181369855 181370182 -46154396 + L1MA4 LINE L1 5318 5643 -657 220 102 41 0 chr3 181370187 181370236 -46154342 + (TA)n Simple_repeat Simple_repeat 2 52 0 3588 126 35 9 chr3 181370247 181370880 -46153698 + L1MA4 LINE L1 5642 6290 -10 1606 191 0 24 chr3 181371149 181371447 -46153131 + AluJo SINE Alu 1 291 -21 24 0 0 0 chr3 181371447 181371471 -46153107 + AT_rich Low_complexity Low_complexity 1 24 0 202 280 0 27 chr3 181371623 181371698 -46152880 + CT-rich Low_complexity Low_complexity 2 74 0 1323 174 117 0 chr3 181371894 181372141 -46152437 + Tigger7 DNA MER2_type 8 283 -2204 397 76 152 0 chr3 181372135 181372201 -46152377 + Tigger7 DNA MER2_type 2177 2252 -235 * 475 177 0 0 chr3 181372201 181372280 -46152298 - FLAM_A SINE Alu -26 116 38 1184 225 31 12 chr3 181372280 181372605 -46151973 - L1M4 LINE L1 -912 5234 4904 524 122 0 0 chr3 181372903 181372977 -46151601 + FLAM_A SINE Alu 43 116 -26 27 29 0 0 chr3 181372983 181373017 -46151561 + AT_rich Low_complexity Low_complexity 1 34 0 1281 258 45 61 chr3 181373045 181373684 -46150894 - L1ME3A LINE L1 -260 5910 5265 331 283 38 9 chr3 181373716 181373822 -46150756 - L1ME3A LINE L1 -985 5161 5053 1682 97 16 0 chr3 181373872 181374119 -46150459 - L1MA2 LINE L1 -1 6303 6053 409 275 7 14 chr3 181374283 181374465 -46150113 - L1ME3A LINE L1 -1538 4608 4428 42064 36 27 5 chr3 181374467 181380483 -46144095 - L1PA3 LINE L1 -3 6152 1 466 277 137 55 chr3 181380485 181380957 -46143621 - L1ME3A LINE L1 -1713 4433 3898 1235 209 51 57 chr3 181380957 181381253 -46143325 - AluJo SINE Alu -7 295 2 466 277 137 55 chr3 181381253 181381393 -46143185 - L1ME3A LINE L1 -2248 3898 3771 21 0 0 0 chr3 181381405 181381426 -46143152 + AT_rich Low_complexity Low_complexity 1 21 0 264 59 0 0 chr3 181381440 181381474 -46143104 + (TG)n Simple_repeat Simple_repeat 2 35 0 198 0 0 0 chr3 181381487 181381509 -46143069 + (T)n Simple_repeat Simple_repeat 1 22 0 246 262 65 19 chr3 181381521 181381628 -46142950 - L1ME3A LINE L1 -2413 3733 3622 25 31 0 0 chr3 181381824 181381856 -46142722 + AT_rich Low_complexity Low_complexity 1 32 0 1021 318 199 12 chr3 181381964 181382647 -46141931 + L2 LINE L2 1838 2648 -666 441 358 147 16 chr3 181382738 181383065 -46141513 - L2 LINE L2 -236 3077 2722 1010 271 108 0 chr3 181383088 181383376 -46141202 - L2 LINE L2 -1030 2284 1966 25 0 0 0 chr3 181384178 181384203 -46140375 + AT_rich Low_complexity Low_complexity 1 25 0 819 241 12 0 chr3 181385649 181385811 -46138767 - FRAM SINE Alu -2 164 1 3384 200 69 49 chr3 181386644 181386784 -46137794 + L1ME1 LINE L1 4648 4784 -1382 8122 108 43 7 chr3 181386784 181388038 -46136540 - HSMAR2 DNA Mariner -1 1301 3 3384 200 69 49 chr3 181388038 181389390 -46135188 + L1ME1 LINE L1 4784 6161 -5 207 0 0 0 chr3 181390419 181390442 -46134136 + (T)n Simple_repeat Simple_repeat 1 23 0 293 140 18 0 chr3 181392520 181392577 -46132001 + (TA)n Simple_repeat Simple_repeat 2 59 0 540 253 93 12 chr3 181392757 181392919 -46131659 + MIR SINE MIR 50 224 -38 640 285 155 34 chr3 181393613 181393936 -46130642 + L2 LINE L2 2938 3299 -14 500 276 26 13 chr3 181393981 181394133 -46130445 - MIR SINE MIR -81 181 28 761 52 0 0 chr3 181394150 181394246 -46130332 + L1HS LINE L1 6057 6152 -3 845 10 0 0 chr3 181394403 181394500 -46130078 + L1HS LINE L1 6057 6153 -2 191 53 0 79 chr3 181394504 181394542 -46130036 + (A)n Simple_repeat Simple_repeat 1 35 0 241 296 0 42 chr3 181394651 181394722 -46129856 - L2 LINE L2 -1 3312 3245 26 50 0 0 chr3 181397423 181397463 -46127115 + AT_rich Low_complexity Low_complexity 1 40 0 2630 242 98 81 chr3 181398227 181400406 -46124172 + L1MC5 LINE L1 5670 7903 -58 309 335 101 29 chr3 181401527 181401805 -46122773 - L1ME LINE L1 -442 5679 5382 271 415 30 0 chr3 181404183 181404383 -46120195 + L2 LINE L2 2505 2710 -604 612 294 34 23 chr3 181404385 181404647 -46119931 + L1MEc LINE L1 35 299 -6097 919 276 76 31 chr3 181404679 181405124 -46119454 + L2 LINE L2 2849 3313 0 260 346 79 10 chr3 181405474 181405575 -46119003 + L2 LINE L2 3148 3255 -17 27 0 0 0 chr3 181405668 181405695 -46118883 + AT_rich Low_complexity Low_complexity 1 27 0 2427 146 16 25 chr3 181405703 181405843 -46118735 + L1MB8 LINE L1 5733 5873 -305 2153 121 0 14 chr3 181405843 181406140 -46118438 + AluSx SINE Alu 1 293 -19 2427 146 16 25 chr3 181406140 181406443 -46118135 + L1MB8 LINE L1 5873 6172 -6 1894 73 0 0 chr3 181408784 181409016 -46115562 - AluY SINE Alu 0 311 80 2330 76 0 21 chr3 181409705 181409995 -46114583 - AluY SINE Alu -27 284 1 187 226 16 32 chr3 181410493 181410555 -46114023 + MIR SINE MIR 104 164 -98 285 344 70 44 chr3 181410868 181411141 -46113437 - L2 LINE L2 -3 3269 2990 259 298 36 0 chr3 181412128 181412212 -46112366 + L2 LINE L2 3186 3272 0 2388 82 17 0 chr3 181412831 181413123 -46111455 + AluSx SINE Alu 2 298 -14 297 0 0 0 chr3 181413124 181413157 -46111421 + (TA)n Simple_repeat Simple_repeat 2 34 0 1644 184 7 26 chr3 181413163 181413268 -46111310 + AluJo SINE Alu 1 107 -205 4142 62 319 3 chr3 181413268 181413896 -46110682 - LTR12 LTR ERV1 0 826 1 1644 184 7 26 chr3 181413896 181414099 -46110479 + AluJo SINE Alu 107 303 -9 2473 73 0 28 chr3 181414538 181414855 -46109723 - AluY SINE Alu -3 308 1 315 150 6 45 chr3 181416084 181416166 -46108412 - L1ME LINE L1 -472 5649 5603 1275 97 117 5 chr3 181416282 181416478 -46108100 + AluSq SINE Alu 1 218 -95 239 302 0 21 chr3 181416521 181416617 -46107961 + CT-rich Low_complexity Low_complexity 3 96 0 462 186 47 29 chr3 181417168 181417509 -46107069 + CT-rich Low_complexity Low_complexity 1 347 0 316 163 31 20 chr3 181417545 181417643 -46106935 + CT-rich Low_complexity Low_complexity 1 99 0 502 213 20 28 chr3 181417656 181417976 -46106602 + C-rich Low_complexity Low_complexity 1 317 0 465 274 164 40 chr3 181418297 181418523 -46106055 - MIR SINE MIR 0 262 9 302 258 83 99 chr3 181419413 181419785 -46104793 - MLT1K LTR MaLR -29 559 194 1563 198 52 22 chr3 181420159 181420522 -46104056 + MLT1A2 LTR MaLR 1 374 0 436 241 111 20 chr3 181421162 181421361 -46103217 - L1MC4a LINE L1 -1830 5978 5762 266 311 44 0 chr3 181421423 181421513 -46103065 - L2 LINE L2 -28 3244 3151 540 304 24 0 chr3 181421514 181421682 -46102896 - L1MC4a LINE L1 -2100 5708 5537 407 309 139 19 chr3 181422714 181422973 -46101605 + LTR16A1 LTR ERVL 168 457 0 657 240 88 40 chr3 181422977 181423371 -46101207 + MLT1J LTR MaLR 43 502 -9 251 83 0 0 chr3 181423405 181423441 -46101137 + LTR67 LTR ERVL 103 138 -419 * 286 219 0 16 chr3 181423416 181423480 -46101098 + MLT1J LTR MaLR 110 172 -339 * 622 200 17 160 chr3 181423450 181423750 -46100828 + MLT1L LTR MaLR 207 463 -152 1111 229 81 38 chr3 181423928 181424273 -46100305 + MLT1A1 LTR MaLR 1 360 -5 267 317 30 0 chr3 181424380 181424481 -46100097 - MLT1L LTR MaLR -114 501 398 842 289 73 20 chr3 181424549 181424944 -46099634 + L2 LINE L2 2849 3264 -49 2305 69 35 0 chr3 181425340 181425629 -46098949 + AluSg SINE Alu 2 300 -10 256 274 42 60 chr3 181425629 181425797 -46098781 + L2 LINE L2 1786 1950 -1364 2443 65 3 7 chr3 181427827 181428150 -46096428 + AluSp SINE Alu 1 313 0 1977 129 41 3 chr3 181428162 181428456 -46096122 + AluSx SINE Alu 5 309 -3 641 224 122 56 chr3 181428877 181429073 -46095505 - MER3 DNA MER1_type 0 209 1 465 274 164 40 chr3 181430181 181430407 -46094171 - MIR SINE MIR 0 262 9 302 258 83 99 chr3 181431299 181431671 -46092907 - MLT1K LTR MaLR -29 559 194 968 161 44 39 chr3 181432045 181432250 -46092328 + MLT1A2 LTR MaLR 1 206 -168 1224 99 0 0 chr3 181432408 181432569 -46092009 - AluSg SINE Alu -149 161 1 2274 78 0 14 chr3 181432857 181433178 -46091400 + AluSg1 SINE Alu 1 317 0 231 245 0 0 chr3 181433542 181433595 -46090983 - L2 LINE L2 -5 3308 3256 194 114 0 29 chr3 181433614 181433649 -46090929 - L2 LINE L2 -245 3068 3035 2424 103 0 0 chr3 181433785 181434096 -46090482 + AluSx SINE Alu 1 311 -1 522 238 113 22 chr3 181434324 181434555 -46090023 - MER112 DNA MER1_type 0 256 5 257 232 0 0 chr3 181434556 181434612 -46089966 + MIR3 SINE MIR 150 205 -3 2432 151 52 10 chr3 181435407 181435816 -46088762 - MSTB LTR MaLR 0 414 1 1910 151 13 7 chr3 181437486 181437784 -46086794 + AluJb SINE Alu 2 301 -11 2352 148 122 28 chr3 181437892 181438353 -46086225 - MLT1D LTR MaLR -1 504 1 2650 50 0 0 chr3 181439709 181440008 -46084570 - AluY SINE Alu -12 299 1 25 0 0 0 chr3 181440140 181440165 -46084413 + AT_rich Low_complexity Low_complexity 1 25 0 2252 87 24 7 chr3 181440502 181440800 -46083778 - AluSp SINE Alu -10 303 1 797 191 39 6 chr3 181441136 181441314 -46083264 + MER5A DNA MER1_type 6 189 0 923 198 16 58 chr3 181441617 181441860 -46082718 + MLT1C LTR MaLR 1 233 -234 709 110 9 9 chr3 181441863 181441972 -46082606 + FRAM SINE Alu 54 162 -14 1124 183 29 12 chr3 181441974 181442214 -46082364 + MLT1C LTR MaLR 224 467 0 225 0 0 0 chr3 181442310 181442335 -46082243 + (TC)n Simple_repeat Simple_repeat 1 25 0 * 366 23 0 0 chr3 181442334 181442377 -46082201 + (CA)n Simple_repeat Simple_repeat 1 43 0 341 254 58 29 chr3 181442477 181442615 -46081963 + MIR SINE MIR 61 202 -60 2406 96 0 0 chr3 181443038 181443340 -46081238 + AluSx SINE Alu 1 302 -10 240 243 52 73 chr3 181443898 181444034 -46080544 - L1ME LINE L1 -417 5704 5572 253 239 31 69 chr3 181444057 181444187 -46080391 - L1ME LINE L1 -2269 5516 5392 226 139 0 0 chr3 181444212 181444248 -46080330 + MIR SINE MIR 193 228 -34 2351 98 0 0 chr3 181444332 181444628 -46079950 + AluY SINE Alu 1 296 -15 224 323 122 53 chr3 181445113 181445376 -46079202 + L2 LINE L2 2965 3245 -27 2079 125 3 3 chr3 181445728 181446023 -46078555 + AluSx SINE Alu 3 297 -15 205 331 133 40 chr3 181448120 181448443 -46076135 + L2 LINE L2 2920 3272 0 221 380 84 17 chr3 181448950 181449129 -46075449 - L3b LINE CR1 -3 1580 1390 524 164 45 18 chr3 181450194 181450304 -46074274 - AluJb SINE Alu -3 309 197 2070 103 31 3 chr3 181450716 181451008 -46073570 + AluSg SINE Alu 2 301 -9 311 322 147 0 chr3 181451127 181451270 -46073308 + MIR SINE MIR 21 184 -78 2338 83 0 7 chr3 181452101 181452402 -46072176 + AluY SINE Alu 1 299 -12 1877 105 39 11 chr3 181453652 181453937 -46070641 + AluY SINE Alu 1 293 -18 1916 121 29 0 chr3 181455419 181455721 -46068857 - AluSx SINE Alu 0 310 1 781 230 6 12 chr3 181457000 181457161 -46067417 + FRAM SINE Alu 1 157 -19 219 326 76 29 chr3 181457226 181457398 -46067180 - L2 LINE L2 -613 2701 2522 714 201 42 26 chr3 181457923 181458112 -46066466 - L2 LINE L2 -3 3310 3119 1561 175 4 22 chr3 181458119 181458388 -46066190 + AluJo SINE Alu 46 309 -3 3061 241 170 21 chr3 181458396 181459539 -46065039 - L2 LINE L2 -692 2622 1310 2175 95 0 3 chr3 181460268 181460586 -46063992 + AluY SINE Alu 1 317 0 193 268 0 0 chr3 181460678 181460719 -46063859 + MIR SINE MIR 81 121 -87 31 0 0 24 chr3 181462362 181462381 -46062197 + AT_rich Low_complexity Low_complexity 1 19 -22 198 0 0 0 chr3 181462381 181462403 -46062175 + (CA)n Simple_repeat Simple_repeat 2 23 0 31 0 0 24 chr3 181462403 181462425 -46062153 + AT_rich Low_complexity Low_complexity 19 41 0 765 100 0 0 chr3 181462454 181462554 -46062024 - AluJ/FLAM SINE Alu -212 100 1 21 0 0 0 chr3 181462561 181462582 -46061996 + AT_rich Low_complexity Low_complexity 1 21 0 2815 174 41 38 chr3 181463215 181463824 -46060754 - LTR36 LTR ERV1 0 611 1 323 320 227 5 chr3 181464085 181464279 -46060299 + MIR SINE MIR 20 256 -6 36 0 0 0 chr3 181466103 181466139 -46058439 + AT_rich Low_complexity Low_complexity 1 36 0 1161 153 40 59 chr3 181466140 181466362 -46058216 + AluJo SINE Alu 1 218 -94 33 25 0 0 chr3 181466393 181466433 -46058145 + AT_rich Low_complexity Low_complexity 1 40 0 703 89 0 0 chr3 181466873 181466963 -46057615 - AluJ/FLAM SINE Alu -211 101 12 2096 112 0 50 chr3 181467189 181467511 -46057067 - AluSx SINE Alu -6 306 1 296 328 15 8 chr3 181467730 181467864 -46056714 - HsTC2 DNA Tc2 -1116 782 648 3914 80 11 14 chr3 181467880 181467906 -46056672 - L1PA13 LINE L1 -1 6162 6137 654 198 0 0 chr3 181467906 181468022 -46056556 + FLAM_A SINE Alu 1 116 -17 3914 80 11 14 chr3 181468022 181468558 -46056020 - L1PA13 LINE L1 -26 6137 5602 499 248 157 13 chr3 181468706 181468859 -46055719 + MER5B DNA MER1_type 1 175 -3 329 302 121 20 chr3 181469037 181469186 -46055392 + MIR3 SINE MIR 31 194 -14 384 249 89 53 chr3 181469478 181469610 -46054968 + MIR SINE MIR 72 213 -49 1710 190 0 10 chr3 181469610 181469920 -46054658 + AluJb SINE Alu 1 307 -5 384 249 89 53 chr3 181469920 181469956 -46054622 + MIR SINE MIR 213 246 -16 1118 144 119 0 chr3 181472832 181473026 -46051552 - AluSq SINE Alu -12 301 85 22 35 0 0 chr3 181473062 181473091 -46051487 + AT_rich Low_complexity Low_complexity 1 29 0 376 357 16 8 chr3 181473202 181473331 -46051247 + MIR3 SINE MIR 31 160 -48 2245 94 0 10 chr3 181474832 181475120 -46049458 + AluSx SINE Alu 1 285 -27 267 106 0 0 chr3 181475127 181475174 -46049404 - L1MA7 LINE L1 -15 6276 6230 1864 143 3 30 chr3 181475294 181475594 -46048984 + AluJo SINE Alu 3 294 -18 1924 146 0 21 chr3 181475594 181475881 -46048697 + AluSx SINE Alu 25 305 -7 22 70 0 0 chr3 181476173 181476216 -46048362 + AT_rich Low_complexity Low_complexity 1 43 0 21 0 0 0 chr3 181476242 181476263 -46048315 + AT_rich Low_complexity Low_complexity 1 21 0 419 126 46 29 chr3 181476285 181476459 -46048119 + (TA)n Simple_repeat Simple_repeat 1 177 0 3087 85 27 11 chr3 181478238 181478687 -46045891 - L1PA13 LINE L1 -1 6162 5707 427 125 0 0 chr3 181479114 181479186 -46045392 - L1MA10 LINE L1 -8 6326 6255 1896 138 19 32 chr3 181479549 181479860 -46044718 - AluJb SINE Alu -5 307 1 234 283 101 35 chr3 181479913 181480087 -46044491 - MIR SINE MIR -30 232 47 242 182 0 0 chr3 181481688 181481732 -46042846 - MER3 DNA MER1_type -165 44 1 871 220 11 26 chr3 181481826 181482017 -46042561 - MIR SINE MIR -30 232 45 936 140 0 0 chr3 181482289 181482432 -46042146 + L1PB4 LINE L1 6001 6143 -13 9450 110 36 38 chr3 181483219 181483588 -46040990 - Tigger1 DNA MER2_type 0 2418 2050 720 174 8 8 chr3 181483588 181483709 -46040869 - FLAM_A SINE Alu -11 122 2 9450 110 36 38 chr3 181483709 181484795 -46039783 - Tigger1 DNA MER2_type -368 2050 965 2172 125 3 13 chr3 181484795 181485099 -46039479 + AluSg SINE Alu 1 301 -9 9450 110 36 38 chr3 181485099 181485339 -46039239 - Tigger1 DNA MER2_type -1453 965 726 1698 175 25 38 chr3 181485339 181485597 -46038981 - Tigger1 DNA MER2_type -2058 360 107 2528 87 0 0 chr3 181485597 181485907 -46038671 + AluSq SINE Alu 1 310 -3 1698 175 25 38 chr3 181485907 181486013 -46038565 - Tigger1 DNA MER2_type -2311 107 1 22 80 0 0 chr3 181486024 181486074 -46038504 + AT_rich Low_complexity Low_complexity 1 50 0 1638 180 25 3 chr3 181486321 181486604 -46037974 - AluJb SINE Alu -21 291 3 33 66 0 0 chr3 181487190 181487251 -46037327 + AT_rich Low_complexity Low_complexity 1 61 0 2456 72 3 0 chr3 181487287 181487591 -46036987 - AluSg SINE Alu -5 305 1 1817 122 82 4 chr3 181488239 181488518 -46036060 + AluSx SINE Alu 1 301 -11 2252 102 30 3 chr3 181488795 181489100 -46035478 + AluSq SINE Alu 1 313 0 602 160 0 0 chr3 181489157 181489257 -46035321 - LTR65 LTR ERV1 0 669 570 1122 147 4 7 chr3 181491647 181491879 -46032699 - AluJb SINE Alu -16 296 1 2029 149 30 6 chr3 181494141 181494477 -46030101 - MER2 DNA MER2_type 0 344 1 1652 204 0 7 chr3 181494782 181495091 -46029487 - AluJb SINE Alu -5 307 1 29 0 0 0 chr3 181496306 181496335 -46028243 + AT_rich Low_complexity Low_complexity 1 29 0 1806 238 66 48 chr3 181497779 181498389 -46026189 + MLT1E2 LTR MaLR 2 622 -4 752 241 44 31 chr3 181498399 181498643 -46025935 - MIR SINE MIR -4 258 10 22 70 0 0 chr3 181499387 181499430 -46025148 + AT_rich Low_complexity Low_complexity 1 43 0 358 294 56 28 chr3 181500389 181500532 -46024046 - MIR SINE MIR -70 192 46 2297 87 0 3 chr3 181502047 181502346 -46022232 + AluSq SINE Alu 1 298 -15 2252 92 10 13 chr3 181504131 181504437 -46020141 + AluSx SINE Alu 1 305 -7 273 262 47 54 chr3 181505216 181505365 -46019213 + L1ME4a LINE L1 5568 5715 -406 3575 222 40 88 chr3 181505533 181506179 -46018399 + L1MC3 LINE L1 6675 7242 -543 2341 103 3 0 chr3 181506179 181506490 -46018088 + AluSp SINE Alu 1 312 -1 3575 222 40 88 chr3 181506490 181507003 -46017575 + L1MC3 LINE L1 7242 7778 -7 257 230 40 20 chr3 181507007 181507107 -46017471 - L1ME LINE L1 -252 5869 5768 2052 96 0 0 chr3 181507128 181507389 -46017189 - AluSg SINE Alu -10 300 40 531 120 0 0 chr3 181507389 181507464 -46017114 - AluS SINE Alu -235 75 1 373 261 140 27 chr3 181507572 181507829 -46016749 + L1ME4a LINE L1 5705 5990 -131 917 220 6 0 chr3 181508253 181508426 -46016152 + FRAM SINE Alu 1 173 -3 2060 117 17 17 chr3 181508543 181508842 -46015736 - AluSx SINE Alu -12 300 2 564 316 84 4 chr3 181511054 181511279 -46013299 - MIR SINE MIR 0 262 20 2546 62 3 0 chr3 181511582 181511891 -46012687 - AluY SINE Alu -1 310 1 368 155 25 230 chr3 181512257 181512418 -46012160 - L2 LINE L2 0 3313 3186 711 215 21 16 chr3 181512704 181512890 -46011688 + MER5A DNA MER1_type 1 187 -2 194 390 0 0 chr3 181513070 181513152 -46011426 + L2 LINE L2 3191 3272 0 28 29 0 0 chr3 181513431 181513466 -46011112 + AT_rich Low_complexity Low_complexity 1 35 0 2391 79 0 7 chr3 181513930 181514235 -46010343 - AluSg SINE Alu -7 303 1 455 331 75 81 chr3 181514324 181514883 -46009695 + HAL1 LINE L1 809 1364 -1143 192 254 79 0 chr3 181515439 181515502 -46009076 - MIR SINE MIR -75 187 120 21 36 0 0 chr3 181515557 181515585 -46008993 + AT_rich Low_complexity Low_complexity 1 28 0 796 182 0 0 chr3 181516548 181516680 -46007898 + FLAM_C SINE Alu 2 133 0 27 49 0 0 chr3 181517205 181517246 -46007332 + AT_rich Low_complexity Low_complexity 1 41 0 935 264 118 6 chr3 181518595 181518828 -46005750 + L2 LINE L2 2290 2572 -742 2426 50 20 10 chr3 181518828 181519130 -46005448 + AluY SINE Alu 1 305 -6 935 264 118 6 chr3 181519130 181519226 -46005352 + L2 LINE L2 2572 2656 -658 260 210 99 25 chr3 181519329 181519410 -46005168 - LTR43 LTR ERV1 -144 458 372 1582 120 103 50 chr3 181519410 181519924 -46004654 + MER51A LTR ERV1 1 634 0 12033 100 24 7 chr3 181520024 181521235 -46003343 + Charlie3 DNA MER1_type 1 1254 -1452 2362 100 0 0 chr3 181521235 181521536 -46003042 + AluSg SINE Alu 1 301 -9 12033 100 24 7 chr3 181521536 181522092 -46002486 + Charlie3 DNA MER1_type 1254 1799 -907 40845 33 22 1 chr3 181522092 181528107 -45996471 - L1PA2 LINE L1 -3 6152 13 2977 88 0 0 chr3 181528107 181528503 -45996075 + Charlie3 DNA MER1_type 1780 2175 -535 3396 129 81 28 chr3 181528512 181529465 -45995113 + MER11A LTR ERVK 20 1266 0 * 3572 96 12 36 chr3 181529465 181530017 -45994561 + Charlie3 DNA MER1_type 2168 2706 -4 293 188 14 0 chr3 181530027 181530096 -45994482 - LTR43 LTR ERV1 -340 262 193 295 208 208 33 chr3 181530340 181530460 -45994118 + L2 LINE L2 2606 2746 -568 2044 112 3 0 chr3 181530537 181530840 -45993738 + MLT2A2 LTR ERVL 1 304 -149 4802 106 43 27 chr3 181530850 181531617 -45992961 + MER4E LTR ERV1 1 779 0 450 153 246 8 chr3 181531635 181531753 -45992825 - MER4C LTR ERV1 -21 444 299 1109 150 137 48 chr3 181531813 181532127 -45992451 - MER4A LTR ERV1 -322 342 1 1182 134 25 15 chr3 181532128 181532370 -45992208 + MLT2A2 LTR ERVL 293 453 0 200 194 15 90 chr3 181532375 181532442 -45992136 + L2 LINE L2 2942 3003 -310 2247 114 3 0 chr3 181532442 181532741 -45991837 - AluSg SINE Alu -10 300 1 497 244 181 24 chr3 181532742 181532947 -45991631 + L2 LINE L2 3077 3313 0 2681 101 0 8 chr3 181533114 181533480 -45991098 - THE1B LTR MaLR -1 363 1 29 0 0 0 chr3 181533587 181533616 -45990962 + AT_rich Low_complexity Low_complexity 1 29 0 483 180 0 20 chr3 181533888 181533988 -45990590 + MER4A LTR ERV1 1 98 -566 * 1634 131 166 75 chr3 181533984 181534358 -45990220 + MER4A LTR ERV1 257 664 0 3461 194 40 55 chr3 181534477 181535414 -45989164 + HERVI LTR ERV1 78 999 -6786 184 87 87 43 chr3 181536021 181536113 -45988465 + (TTATA)n Simple_repeat Simple_repeat 5 100 0 1765 210 70 42 chr3 181536169 181536741 -45987837 + HERVI LTR ERV1 1219 4639 -3146 452 255 29 18 chr3 181536760 181536915 -45987663 + HERVI LTR ERV1 3747 4914 -2750 304 215 11 75 chr3 181536883 181536976 -45987602 + HERVI LTR ERV1 5331 5417 -2368 * 1482 239 137 16 chr3 181536993 181537437 -45987141 + HERVI LTR ERV1 2662 3159 -3737 5795 228 15 6 chr3 181537815 181539146 -45985432 + HERVI LTR ERV1 6441 7783 -2 953 201 91 100 chr3 181539150 181539651 -45984927 + LTR10B LTR ERV1 1 542 -5 2565 96 134 19 chr3 181539672 181540143 -45984435 + LTR10B-int LTR ERV1 39 563 -6035 293 128 0 105 chr3 181540214 181540300 -45984278 + LTR10B-int LTR ERV1 750 826 -5772 1040 225 84 8 chr3 181540369 181540631 -45983947 + LTR10B-int LTR ERV1 1851 2132 -4199 1718 122 7 18 chr3 181540717 181540996 -45983582 + MER4B-int LTR ERV1 196 471 -6287 3205 79 7 0 chr3 181540997 181541426 -45983152 + LTR3 LTR ERVK 1 432 0 2153 119 36 48 chr3 181541427 181541490 -45983088 + MER4B-int LTR ERV1 468 530 -6228 1834 122 0 47 chr3 181541490 181541769 -45982809 + AluSg SINE Alu 1 266 -44 2153 119 36 48 chr3 181541769 181541951 -45982627 + MER4B-int LTR ERV1 530 713 -6045 2190 112 3 0 chr3 181541951 181542261 -45982317 + AluSp SINE Alu 1 313 0 2153 119 36 48 chr3 181542261 181542304 -45982274 + MER4B-int LTR ERV1 713 755 -6003 2078 110 4 0 chr3 181542304 181542576 -45982002 + AluSp SINE Alu 1 273 -40 2153 119 36 48 chr3 181542576 181542919 -45981659 + MER4B-int LTR ERV1 755 1149 -5609 423 0 0 0 chr3 181542919 181542966 -45981612 + (TG)n Simple_repeat Simple_repeat 2 48 0 4296 80 44 11 chr3 181542984 181543694 -45980884 + MER4B-int LTR ERV1 1764 2496 -4102 1226 160 76 0 chr3 181543695 181543932 -45980646 - LTR8 LTR ERV1 -436 255 1 3086 138 74 56 chr3 181543932 181544604 -45979974 + MER4B-int LTR ERV1 2737 3429 -3169 1940 139 0 16 chr3 181544604 181544913 -45979665 - AluSg SINE Alu -6 304 1 3086 138 74 56 chr3 181544913 181545096 -45979482 + MER4B-int LTR ERV1 3429 3607 -2991 266 57 0 0 chr3 181545096 181545131 -45979447 - THE1B LTR MaLR -325 39 5 607 31 0 82 chr3 181545135 181545232 -45979346 - MER4-int LTR ERV1 -2000 4598 4510 9899 185 15 16 chr3 181545250 181547712 -45976866 + L1M2 LINE L1 3056 5517 -743 1652 143 51 38 chr3 181547847 181548140 -45976438 + AluJb SINE Alu 1 297 -15 482 224 97 99 chr3 181548140 181548201 -45976377 + L1MEd LINE L1 656 716 -5403 2134 113 3 0 chr3 181548201 181548483 -45976095 + AluSq SINE Alu 1 283 -30 253 77 0 0 chr3 181548483 181548522 -45976056 + (TAAA)n Simple_repeat Simple_repeat 2 92 0 482 224 97 99 chr3 181548522 181548902 -45975676 + L1MEd LINE L1 716 1097 -5022 1408 201 37 37 chr3 181548902 181549256 -45975322 + MLT1A1 LTR MaLR 1 354 -11 477 276 65 43 chr3 181549265 181549497 -45975081 + L1MEd LINE L1 1096 1366 -4862 1925 108 90 0 chr3 181549505 181549783 -45974795 + AluSp SINE Alu 1 303 -10 329 358 25 20 chr3 181549791 181549995 -45974583 + HAL1 LINE L1 1442 1646 -861 4288 29 0 4 chr3 181550038 181550552 -45974026 - L1PA4 LINE L1 -4 6151 5640 1170 158 5 16 chr3 181550584 181550774 -45973804 + AluJo SINE Alu 1 188 -124 1908 110 51 57 chr3 181550931 181551000 -45973578 + L1MA6 LINE L1 5904 5972 -328 2105 96 17 0 chr3 181551000 181551291 -45973287 + AluSx SINE Alu 5 300 -12 1908 110 51 57 chr3 181551291 181551575 -45973003 + L1MA6 LINE L1 5972 6255 -45 851 305 68 14 chr3 181552011 181552450 -45972128 - LTR16B LTR ERVL 0 464 2 431 273 93 50 chr3 181553212 181553694 -45970884 + L1ME4a LINE L1 5352 5839 -282 549 243 158 0 chr3 181554185 181554337 -45970241 - L1MDa LINE L1 -6349 191 16 463 278 96 11 chr3 181554337 181554607 -45969971 - L1M4 LINE L1 -3644 2502 2210 323 54 357 0 chr3 181555061 181555117 -45969461 - AluY SINE Alu -8 293 218 22 35 0 0 chr3 181555257 181555286 -45969292 + AT_rich Low_complexity Low_complexity 1 29 0 2151 122 10 0 chr3 181555387 181555690 -45968888 - AluSx SINE Alu -5 307 2 25 31 0 0 chr3 181556239 181556271 -45968307 + AT_rich Low_complexity Low_complexity 1 32 0 2243 99 3 25 chr3 181557688 181558002 -45966576 + AluSc SINE Alu 1 307 -2 705 186 109 78 chr3 181558101 181558294 -45966284 - MER3 DNA MER1_type -10 199 1 2110 134 0 3 chr3 181558788 181559086 -45965492 - AluSx SINE Alu -13 299 3 2131 78 0 29 chr3 181560528 181560809 -45963769 + AluY SINE Alu 1 273 -38 2012 91 3 46 chr3 181560950 181561099 -45963479 - AluSg SINE Alu -37 273 140 2378 87 0 6 chr3 181561099 181561411 -45963167 - AluSg SINE Alu 0 310 1 2012 91 3 46 chr3 181561411 181561546 -45963032 - AluSg SINE Alu -170 140 1 68 69 0 0 chr3 181561643 181561774 -45962804 + AT_rich Low_complexity Low_complexity 1 131 0 471 266 146 33 chr3 181561946 181562220 -45962358 + L1ME4a LINE L1 5761 6065 -56 22 56 0 0 chr3 181562478 181562514 -45962064 + AT_rich Low_complexity Low_complexity 1 36 0 32 26 0 0 chr3 181562689 181562728 -45961850 + AT_rich Low_complexity Low_complexity 1 39 0 346 279 68 21 chr3 181563285 181563475 -45961103 + L1ME LINE L1 5443 5641 -529 257 306 67 0 chr3 181563508 181563642 -45960936 + L1ME LINE L1 5720 5862 -300 276 320 64 0 chr3 181563650 181563822 -45960756 + L1ME3A LINE L1 5774 5956 -214 273 295 9 9 chr3 181564014 181564119 -45960459 + L1MC4 LINE L1 7929 8033 -9 444 235 84 70 chr3 181565482 181565695 -45958883 - MER112 DNA MER1_type -43 217 2 1025 210 14 14 chr3 181566480 181566699 -45957879 + MER20 DNA MER1_type 1 219 0 687 285 119 23 chr3 181567373 181567727 -45956851 + L2 LINE L2 2926 3313 0 435 365 62 27 chr3 181567735 181568138 -45956440 + L2 LINE L2 2243 2659 -655 291 257 131 55 chr3 181568242 181568425 -45956153 + L2 LINE L2 2816 3012 -260 1781 167 89 3 chr3 181570445 181570781 -45953797 + MER47A DNA MER2_type 2 366 0 2278 115 0 0 chr3 181571241 181571545 -45953033 + AluSx SINE Alu 1 304 -8 1448 233 133 6 chr3 181571814 181572614 -45951964 - L1ME1 LINE L1 -6 6160 5186 2083 148 127 0 chr3 181572672 181573043 -45951535 + MLT1D LTR MaLR 88 505 0 26 0 0 0 chr3 181573045 181573071 -45951507 + AT_rich Low_complexity Low_complexity 1 26 0 312 345 112 0 chr3 181573074 181573190 -45951388 + L2 LINE L2 3134 3262 -10 2223 127 0 0 chr3 181573191 181573498 -45951080 + AluSg SINE Alu 1 307 -3 198 0 0 0 chr3 181573502 181573524 -45951054 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1909 57 9 0 chr3 181574076 181574305 -45950273 - AluY SINE Alu -6 305 75 1234 219 121 71 chr3 181574327 181574687 -45949891 - MLT1F1 LTR MaLR 0 567 171 2195 95 0 3 chr3 181574687 181574982 -45949596 - AluY SINE Alu -17 294 1 1234 219 121 71 chr3 181574982 181575129 -45949449 - MLT1F1 LTR MaLR -396 171 33 378 299 22 22 chr3 181575476 181575610 -45948968 - MER5A DNA MER1_type -8 181 48 331 237 40 0 chr3 181575669 181575745 -45948833 - L2 LINE L2 -2 3311 3233 451 283 79 0 chr3 181576236 181576413 -45948165 - HAL1 LINE L1 -875 1632 1442 24 0 0 0 chr3 181576417 181576441 -45948137 + AT_rich Low_complexity Low_complexity 1 24 0 2289 110 0 7 chr3 181576513 181576823 -45947755 - AluSq SINE Alu -5 308 1 2572 132 7 38 chr3 181577178 181577624 -45946954 - MSTB1 LTR MaLR 0 432 1 1352 168 4 4 chr3 181577635 181577861 -45946717 - AluJo SINE Alu 0 312 87 684 125 0 0 chr3 181577861 181577957 -45946621 - MER30B DNA MER1_type -94 96 1 378 0 0 0 chr3 181578002 181578044 -45946534 + (CA)n Simple_repeat Simple_repeat 2 43 0 2038 248 91 19 chr3 181578044 181578789 -45945789 - L1ME LINE L1 -5241 829 31 24 32 0 0 chr3 181578950 181578981 -45945597 + AT_rich Low_complexity Low_complexity 1 31 0 661 149 127 22 chr3 181579278 181579412 -45945166 - MLT1B LTR MaLR -50 340 193 8528 149 132 13 chr3 181579684 181580507 -45944071 - L1MCa LINE L1 -4421 2005 1281 2276 93 7 7 chr3 181580507 181580807 -45943771 - AluSx SINE Alu -12 300 1 8528 149 132 13 chr3 181580807 181581740 -45942838 - L1MCa LINE L1 -5145 1281 41 1537 155 58 29 chr3 181581751 181582029 -45942549 - AluJb SINE Alu -26 286 1 28 0 0 0 chr3 181582186 181582214 -45942364 + AT_rich Low_complexity Low_complexity 1 28 0 1265 69 0 0 chr3 181582402 181582562 -45942016 - L1PA10 LINE L1 -10 6158 5999 21 0 0 0 chr3 181583437 181583458 -45941120 + AT_rich Low_complexity Low_complexity 1 21 0 294 125 0 0 chr3 181584165 181584213 -45940365 + (TG)n Simple_repeat Simple_repeat 2 49 0 198 0 0 0 chr3 181584300 181584322 -45940256 + (CA)n Simple_repeat Simple_repeat 2 23 0 23 33 0 0 chr3 181585104 181585134 -45939444 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr3 181585536 181585574 -45939004 + AT_rich Low_complexity Low_complexity 1 38 0 2251 97 3 3 chr3 181585728 181586027 -45938551 + AluSg SINE Alu 1 299 -11 1888 113 0 70 chr3 181587993 181588320 -45936258 - AluSq SINE Alu -9 304 1 21 57 0 0 chr3 181588471 181588506 -45936072 + AT_rich Low_complexity Low_complexity 1 35 0 1758 157 21 0 chr3 181588607 181588894 -45935684 + AluJb SINE Alu 1 293 -19 242 218 0 96 chr3 181589937 181590093 -45934485 + C-rich Low_complexity Low_complexity 2 142 0 214 256 0 77 chr3 181590441 181590609 -45933969 + C-rich Low_complexity Low_complexity 2 156 0 376 318 0 19 chr3 181590657 181591055 -45933523 + C-rich Low_complexity Low_complexity 1 390 0 206 254 32 111 chr3 181591731 181591857 -45932721 + MIR3 SINE MIR 85 200 -8 740 246 88 52 chr3 181592025 181592432 -45932146 - MER113 DNA MER1_type? -98 423 2 800 255 41 10 chr3 181593440 181593636 -45930942 - MIR SINE MIR -1 261 60 201 271 42 62 chr3 181593697 181593793 -45930785 + L3 LINE CR1 726 819 -758 871 257 128 16 chr3 181593806 181594125 -45930453 - L2 LINE L2 -4 3309 2955 349 338 58 0 chr3 181594242 181594396 -45930182 - MIR SINE MIR -2 260 98 394 222 176 9 chr3 181594732 181594840 -45929738 - L2 LINE L2 -1 3312 3187 1874 226 95 19 chr3 181595068 181595603 -45928975 + MER119 DNA MER1_type 8 583 0 549 235 123 12 chr3 181595833 181596003 -45928575 - MER91B DNA MER1_type -1 189 1 230 289 84 0 chr3 181596243 181596326 -45928252 + MER20 DNA MER1_type 109 198 -21 2260 57 33 10 chr3 181596931 181597230 -45927348 - AluY SINE Alu -5 306 1 2872 133 56 2 chr3 181597242 181597710 -45926868 + L1PA15 LINE L1 5668 6160 -5 2027 112 3 10 chr3 181597787 181598082 -45926496 + AluSg SINE Alu 1 293 -17 2863 121 88 44 chr3 181598085 181598763 -45925815 - MER4-int LTR ERV1 -3154 3444 2737 1340 160 76 0 chr3 181598763 181599000 -45925578 + LTR8 LTR ERV1 1 255 -436 3485 87 49 14 chr3 181599001 181599555 -45925023 - MER4-int LTR ERV1 -4102 2496 1924 796 255 41 10 chr3 181599930 181600126 -45924452 - MIR SINE MIR -1 261 60 187 271 42 62 chr3 181600187 181600283 -45924295 + L3 LINE CR1 726 819 -758 862 257 128 16 chr3 181600296 181600615 -45923963 - L2 LINE L2 -4 3309 2955 313 344 58 0 chr3 181600732 181600886 -45923692 - MIR SINE MIR -2 260 98 384 213 176 9 chr3 181601222 181601330 -45923248 - L2 LINE L2 -1 3312 3187 1794 214 96 9 chr3 181601626 181602093 -45922485 + MER119 DNA MER1_type 76 583 0 616 235 123 12 chr3 181602321 181602491 -45922087 - MER91B DNA MER1_type -1 189 1 236 289 84 0 chr3 181602731 181602814 -45921764 + MER20 DNA MER1_type 109 198 -21 2299 53 33 10 chr3 181603420 181603719 -45920859 - AluY SINE Alu -5 306 1 3056 138 55 2 chr3 181603731 181604203 -45920375 + L1PA15 LINE L1 5668 6164 -1 2335 94 0 10 chr3 181604276 181604585 -45919993 + AluSg SINE Alu 1 306 -4 255 279 82 41 chr3 181604625 181604747 -45919831 - MIR SINE MIR -66 196 70 856 236 36 26 chr3 181605174 181605592 -45918986 - L1ME3 LINE L1 -1 6161 5658 1945 93 70 0 chr3 181606444 181606714 -45917864 - L1PA11 LINE L1 0 6174 5886 465 281 22 7 chr3 181606728 181606863 -45917715 - MIR SINE MIR -113 149 13 2086 109 3 18 chr3 181607062 181607191 -45917387 + AluSp SINE Alu 2 131 -187 242 28 0 28 chr3 181607191 181607227 -45917351 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 2086 109 3 18 chr3 181607227 181607418 -45917160 + AluSp SINE Alu 131 318 0 216 0 0 0 chr3 181607422 181607446 -45917132 + (TAA)n Simple_repeat Simple_repeat 1 24 0 683 270 17 17 chr3 181607446 181607624 -45916954 - MIR SINE MIR -8 254 77 322 258 329 0 chr3 181607723 181607890 -45916688 - Charlie8 DNA MER1_type -2192 225 4 1695 200 72 13 chr3 181608626 181609058 -45915520 - MLT1C LTR MaLR -2 465 6 1419 154 48 48 chr3 181609253 181609545 -45915033 - THE1C LTR MaLR 0 375 84 2148 124 6 0 chr3 181609545 181609859 -45914719 - THE1C-int LTR MaLR -1260 320 5 278 116 0 23 chr3 181609863 181609906 -45914672 - THE1C LTR MaLR 0 428 387 * 1200 179 55 51 chr3 181609903 181610177 -45914401 - THE1C LTR MaLR -100 275 1 26 0 0 0 chr3 181610306 181610332 -45914246 + AT_rich Low_complexity Low_complexity 1 26 0 26 30 0 0 chr3 181610649 181610682 -45913896 + AT_rich Low_complexity Low_complexity 1 33 0 1230 251 116 80 chr3 181611304 181611643 -45912935 - MLT1G LTR MaLR 0 590 265 2542 123 11 16 chr3 181611643 181612009 -45912569 - THE1B LTR MaLR 0 364 1 12234 87 13 18 chr3 181612009 181613597 -45910981 - THE1B-int LTR MaLR 0 1580 1 1230 251 116 80 chr3 181613597 181613817 -45910761 - MLT1G LTR MaLR -324 266 10 587 265 96 31 chr3 181614918 181615220 -45909358 + MLT1J LTR MaLR 100 462 -49 1121 261 162 16 chr3 181615299 181615532 -45909046 - LTR33 LTR ERVL -2 519 321 2060 147 0 0 chr3 181615532 181615832 -45908746 + AluSx SINE Alu 1 300 -12 1121 261 162 16 chr3 181615832 181616031 -45908547 - LTR33 LTR ERVL -200 321 24 794 94 0 0 chr3 181616088 181616194 -45908384 - AluSp/q SINE Alu -2 311 206 24 32 0 0 chr3 181616418 181616449 -45908129 + AT_rich Low_complexity Low_complexity 1 31 0 265 182 0 0 chr3 181617376 181617420 -45907158 - MER3 DNA MER1_type -165 44 1 861 220 11 26 chr3 181617514 181617705 -45906873 - MIR SINE MIR -30 232 45 1006 140 0 0 chr3 181617978 181618121 -45906457 + L1PB4 LINE L1 6001 6143 -13 1870 141 11 71 chr3 181618909 181619277 -45905301 - Tigger1 DNA MER2_type 0 2418 2073 664 150 33 8 chr3 181619278 181619398 -45905180 - FLAM_C SINE Alu -10 123 1 242 287 224 7 chr3 181619772 181619915 -45904663 + MIR SINE MIR 89 262 0 1766 162 48 4 chr3 181620011 181620464 -45904114 - MLT2B1 LTR ERVL -2 518 1 568 234 41 18 chr3 181621263 181621434 -45903144 + L1ME2 LINE L1 5989 6163 -1 831 293 176 26 chr3 181621832 181622456 -45902122 + L3 LINE CR1 510 1227 -350 545 246 9 0 chr3 181622459 181622569 -45902009 + MER81 DNA DNA 4 114 0 245 318 118 12 chr3 181623042 181623127 -45901451 + MIR3 SINE MIR 106 199 -9 520 198 58 0 chr3 181623596 181623717 -45900861 + MIR SINE MIR 15 142 -120 184 314 0 0 chr3 181623725 181623776 -45900802 + L2 LINE L2 3210 3260 -12 424 274 95 70 chr3 181623893 181624250 -45900328 - MLT1J LTR MaLR -25 486 121 1506 184 138 9 chr3 181624313 181624633 -45899945 - MLT1A1 LTR MaLR 0 365 5 872 210 33 0 chr3 181625332 181625513 -45899065 + MER5A DNA MER1_type 1 187 -2 2327 113 0 0 chr3 181625529 181625831 -45898747 - AluSx SINE Alu -10 302 1 1740 146 18 0 chr3 181626134 181626408 -45898170 + AluJb SINE Alu 24 302 -10 2285 142 53 11 chr3 181626532 181626906 -45897672 + MLT1B LTR MaLR 1 390 0 1611 250 19 36 chr3 181626960 181627376 -45897202 + MLT1I LTR MaLR 1 409 0 276 214 14 29 chr3 181627749 181627819 -45896759 - MIR3 SINE MIR -125 83 15 460 136 39 48 chr3 181628309 181628412 -45896166 + L1M1 LINE L1 22 123 -7442 278 333 41 46 chr3 181629737 181629794 -45894784 - L3b LINE CR1 -265 1318 1262 2092 114 40 3 chr3 181629794 181630092 -45894486 + AluSx SINE Alu 1 309 -3 278 333 41 46 chr3 181630092 181630229 -45894349 - L3b LINE CR1 -321 1262 1125 649 224 122 56 chr3 181630513 181630709 -45893869 - MER3 DNA MER1_type 0 209 1 400 275 55 33 chr3 181631865 181632047 -45892531 - MIR SINE MIR -16 246 61 348 24 0 0 chr3 181632147 181632188 -45892390 + (TG)n Simple_repeat Simple_repeat 1 41 0 225 0 0 0 chr3 181632187 181632212 -45892366 + (GA)n Simple_repeat Simple_repeat 1 25 0 * 914 205 42 21 chr3 181632308 181632547 -45892031 - MLT1C LTR MaLR 0 467 224 496 196 9 47 chr3 181632560 181632667 -45891911 - FRAM SINE Alu -25 151 49 2201 92 3 0 chr3 181632811 181633137 -45891441 + AluSp SINE Alu 1 327 0 389 248 73 9 chr3 181633249 181633358 -45891220 + MIR SINE MIR 20 135 -73 33 25 0 0 chr3 181633636 181633676 -45890902 + AT_rich Low_complexity Low_complexity 1 40 0 535 197 24 141 chr3 181634020 181634233 -45890345 + L2 LINE L2 3126 3313 0 258 244 76 50 chr3 181634302 181634421 -45890157 - LTR67 LTR ERVL -8 549 428 23 33 0 0 chr3 181635711 181635741 -45888837 + AT_rich Low_complexity Low_complexity 1 30 0 235 287 46 65 chr3 181636305 181636413 -45888165 + MIR SINE MIR 157 262 0 25 51 0 0 chr3 181636969 181637008 -45887570 + AT_rich Low_complexity Low_complexity 1 39 0 3591 130 25 7 chr3 181637393 181637953 -45886625 - LTR24B LTR ERV1 -6 570 1 259 247 129 54 chr3 181638658 181638751 -45885827 + MIR SINE MIR 81 180 -82 549 279 152 50 chr3 181639253 181639536 -45885042 - MER102a DNA MER1_type 0 330 19 2283 67 7 30 chr3 181640457 181640757 -45883821 + AluY SINE Alu 1 293 -18 207 195 24 0 chr3 181641179 181641220 -45883358 - L2 LINE L2 -7 3265 3224 27 0 0 0 chr3 181641438 181641465 -45883113 + AT_rich Low_complexity Low_complexity 1 27 0 208 266 62 0 chr3 181641499 181641563 -45883015 - L2 LINE L2 -315 2957 2890 1211 246 85 23 chr3 181641715 181642186 -45882392 - MLT1J LTR MaLR -8 503 4 538 258 65 57 chr3 181642802 181643050 -45881528 - MARNA DNA Mariner -198 388 139 243 284 0 34 chr3 181643107 181643195 -45881383 + (CATATA)n Simple_repeat Simple_repeat 3 87 0 405 0 0 0 chr3 181643302 181643347 -45881231 + (TG)n Simple_repeat Simple_repeat 2 46 0 2178 133 0 9 chr3 181644360 181644675 -45879903 - AluSx SINE Alu 0 312 1 186 344 104 0 chr3 181645238 181645334 -45879244 - L2 LINE L2 -10 3262 3157 509 274 42 68 chr3 181646004 181646420 -45878158 - L1MC4a LINE L1 -230 5940 5645 2515 144 5 18 chr3 181646567 181646963 -45877615 - Tigger3(Golem) DNA MER2_type -1 3028 2638 821 230 104 122 chr3 181647940 181648448 -45876130 - MLT1F LTR MaLR -4 538 40 306 0 0 0 chr3 181648456 181648490 -45876088 + (TG)n Simple_repeat Simple_repeat 1 34 0 1830 103 34 8 chr3 181650149 181650412 -45874166 - AluY SINE Alu -1 310 41 562 122 0 0 chr3 181650569 181650651 -45873927 - AluSg/x SINE Alu -16 296 215 349 230 225 31 chr3 181652730 181652921 -45871657 - L1ME4a LINE L1 -162 5959 5732 466 325 31 6 chr3 181653141 181653264 -45871314 + MIR SINE MIR 27 156 -106 1712 188 3 20 chr3 181653264 181653392 -45871186 + AluSx SINE Alu 1 130 -182 207 0 0 0 chr3 181653392 181653415 -45871163 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1712 188 3 20 chr3 181653415 181653590 -45870988 + AluSx SINE Alu 130 299 -13 466 325 31 6 chr3 181653590 181653626 -45870952 + MIR SINE MIR 156 190 -72 21 36 0 0 chr3 181653762 181653790 -45870788 + AT_rich Low_complexity Low_complexity 1 28 0 2113 165 73 5 chr3 181653806 181654205 -45870373 + MSTB LTR MaLR 1 426 0 8810 172 34 10 chr3 181654205 181655816 -45868762 + MSTB-int LTR MaLR 2 1651 0 2335 161 34 7 chr3 181655816 181656231 -45868347 + MSTB LTR MaLR 1 426 0 21 0 0 0 chr3 181656458 181656479 -45868099 + AT_rich Low_complexity Low_complexity 1 21 0 1779 186 8 75 chr3 181656743 181656871 -45867707 + L1 LINE L1 2485 2620 -3526 2321 115 0 0 chr3 181656871 181657183 -45867395 + AluSx SINE Alu 1 312 0 1779 186 8 75 chr3 181657183 181657533 -45867045 + L1 LINE L1 2620 2931 -3215 * 12121 78 3 18 chr3 181657531 181657602 -45866976 - L1P3 LINE L1 -742 5430 5359 2357 94 0 3 chr3 181657602 181657901 -45866677 - AluY SINE Alu -13 298 1 12121 78 3 18 chr3 181657901 181659675 -45864903 - L1P3 LINE L1 -813 5359 3606 671 75 0 2 chr3 181659678 181659779 -45864799 + L1P3 LINE L1 5432 5530 -621 232 159 0 0 chr3 181659764 181659808 -45864770 + L1PB1 LINE L1 5701 5744 -407 * 769 109 0 0 chr3 181659905 181660015 -45864563 - L1PB1 LINE L1 -8 6143 6034 448 215 0 15 chr3 181660015 181660145 -45864433 + (TA)n Simple_repeat Simple_repeat 2 129 0 1128 83 0 0 chr3 181660147 181660303 -45864275 + L1P LINE L1 4041 4196 -1950 225 83 0 0 chr3 181660303 181660339 -45864239 + (TA)n Simple_repeat Simple_repeat 2 37 0 1686 126 7 42 chr3 181660343 181660652 -45863926 + L1PB1 LINE L1 5794 6091 -60 1478 179 99 37 chr3 181660794 181661146 -45863432 - MLT1A2 LTR MaLR 0 374 1 311 296 23 0 chr3 181661177 181661265 -45863313 + L1MC4 LINE L1 6614 6703 -1339 189 0 0 0 chr3 181661265 181661286 -45863292 + (TA)n Simple_repeat Simple_repeat 2 22 0 389 171 6 40 chr3 181661368 181661467 -45863111 - LTR41 LTR ERVL 0 795 680 811 236 85 90 chr3 181661538 181661962 -45862616 - LTR41 LTR ERVL -333 440 19 3224 275 68 31 chr3 181662305 181663503 -45861075 - ERVL LTR ERVL -331 5433 4175 2172 135 22 22 chr3 181663503 181663865 -45860713 - THE1B LTR MaLR -2 362 1 3224 275 68 31 chr3 181663865 181664040 -45860538 - ERVL LTR ERVL -1589 4175 4008 982 283 80 9 chr3 181664181 181664506 -45860072 - ERVL LTR ERVL -2266 3498 3151 1400 304 120 2 chr3 181664508 181665149 -45859429 - ERVL LTR ERVL -2654 3000 2284 959 295 43 3 chr3 181665196 181665521 -45859057 - ERVL LTR ERVL -3555 2209 1872 2238 99 0 23 chr3 181667243 181667546 -45857032 - AluSc SINE Alu -12 297 2 303 183 84 0 chr3 181668002 181668073 -45856505 + MER116 DNA Mariner 3 79 -1 558 329 12 0 chr3 181668168 181668335 -45856243 + L3 LINE CR1 562 730 -847 308 372 35 0 chr3 181668423 181668536 -45856042 - L2 LINE L2 -2 3311 3195 184 237 53 0 chr3 181668649 181668687 -45855891 - L2 LINE L2 -17 3255 3216 1351 312 45 50 chr3 181668691 181669328 -45855250 + L3 LINE CR1 938 1571 -6 676 222 85 11 chr3 181669639 181669828 -45854750 - MLT1K LTR MaLR -4 584 382 430 141 26 0 chr3 181670884 181670962 -45853616 + MADE1 DNA Mariner 1 80 0 981 294 67 13 chr3 181673279 181673517 -45851061 - L1MC4a LINE L1 -743 5403 5624 2343 88 3 0 chr3 181673517 181673811 -45850767 + AluSx SINE Alu 1 295 -17 981 294 67 13 chr3 181673811 181674237 -45850341 - L1MC4a LINE L1 -521 5625 5224 329 254 107 24 chr3 181674268 181674437 -45850141 - L1MC4a LINE L1 -978 5168 4986 2313 128 22 11 chr3 181675199 181675559 -45849019 + THE1B LTR MaLR 1 364 0 309 51 0 0 chr3 181679322 181679361 -45845217 + (TG)n Simple_repeat Simple_repeat 1 39 0 1771 191 75 40 chr3 181679968 181680438 -45844140 - MER66B LTR ERV1 0 486 1 8220 134 21 25 chr3 181680438 181681058 -45843520 - MER66A-int LTR ERV1 0 6676 6055 705 257 189 33 chr3 181681058 181681365 -45843213 + LTR18A LTR ERVL 3 357 0 8220 134 21 25 chr3 181681365 181682947 -45841631 - MER66A-int LTR ERV1 -621 6055 4551 1759 300 13 34 chr3 181682953 181683910 -45840668 - MER66A-int LTR ERV1 -1317 3637 3547 2824 177 46 28 chr3 181683939 181684550 -45840028 - MER66A-int LTR ERV1 -4843 1833 1212 644 282 13 0 chr3 181684646 181684802 -45839776 - MER66A-int LTR ERV1 -3573 3103 2946 3972 196 85 43 chr3 181684890 181685947 -45838631 - MER66A-int LTR ERV1 -5571 1105 4 919 184 11 0 chr3 181685950 181686124 -45838454 - MER66A LTR ERV1 0 478 303 469 188 0 0 chr3 181686140 181686220 -45838358 + MER66B LTR ERV1 407 486 0 216 0 0 0 chr3 181686439 181686463 -45838115 + (TG)n Simple_repeat Simple_repeat 2 25 0 712 284 68 19 chr3 181687180 181687490 -45837088 + MLT1I LTR MaLR 80 404 -5 23 0 0 0 chr3 181688289 181688312 -45836266 + AT_rich Low_complexity Low_complexity 1 23 0 740 272 90 48 chr3 181688554 181688889 -45835689 - L2 LINE L2 0 3313 2965 1516 189 29 84 chr3 181690525 181690976 -45833602 - MLT1C LTR MaLR 0 467 42 2138 264 91 11 chr3 181691123 181692657 -45831921 - L1ME3A LINE L1 -5 6165 4501 612 222 182 6 chr3 181692664 181692840 -45831738 - MER58C DNA MER1_type -8 207 1 782 236 96 57 chr3 181692924 181693013 -45831565 - L1ME3A LINE L1 -2106 4040 3956 1880 141 42 29 chr3 181693013 181693390 -45831188 + L1PA10 LINE L1 5782 6163 -5 782 236 96 57 chr3 181693390 181693686 -45830892 - L1ME3A LINE L1 -2190 3956 3640 384 145 0 0 chr3 181693728 181693790 -45830788 + MLT1H1 LTR MaLR 341 402 -153 616 251 153 42 chr3 181693801 181694108 -45830470 - MER2 DNA MER2_type 0 344 4 323 316 137 0 chr3 181694127 181694244 -45830334 + MIR3 SINE MIR 68 200 -8 348 269 126 24 chr3 181695110 181695277 -45829301 - L2 LINE L2 0 3313 3130 505 311 79 17 chr3 181695305 181695546 -45829032 - L2 LINE L2 -352 2962 2707 350 326 113 21 chr3 181695601 181695742 -45828836 - L2 LINE L2 -4 3268 3115 276 269 39 0 chr3 181696044 181696122 -45828456 + MIR3 SINE MIR 113 193 -15 659 148 45 13 chr3 181696180 181696335 -45828243 + MER58 DNA MER1_type 2146 2305 -115 413 199 125 15 chr3 181696343 181696479 -45828099 + MER58 DNA MER1_type 2270 2420 0 240 317 137 49 chr3 181697556 181697739 -45826839 + MIR SINE MIR 46 244 -18 224 208 250 14 chr3 181697816 181697888 -45826690 - MIR SINE MIR -97 111 23 23 33 0 0 chr3 181698566 181698596 -45825982 + AT_rich Low_complexity Low_complexity 1 30 0 964 254 220 12 chr3 181698743 181699263 -45825315 - L2 LINE L2 -266 3047 2428 596 250 113 33 chr3 181700806 181701018 -45823560 - MIR SINE MIR -33 229 1 388 219 49 12 chr3 181702158 181702240 -45822338 + L2 LINE L2 3187 3271 -42 1524 163 44 29 chr3 181702242 181702571 -45822007 - MER33 DNA MER1_type 0 324 1 544 294 86 37 chr3 181702726 181703135 -45821443 + L2 LINE L2 2601 3060 -212 2443 61 7 3 chr3 181703387 181703681 -45820897 + AluY SINE Alu 1 295 -16 269 208 89 132 chr3 181703920 181704113 -45820465 + MER5A DNA MER1_type 1 178 0 1234 256 206 19 chr3 181704632 181705455 -45819123 - L2 LINE L2 -3 3310 2351 558 134 126 0 chr3 181705792 181705911 -45818667 + MER58D DNA MER1_type 112 245 -141 2349 163 23 2 chr3 181706084 181706514 -45818064 + L1PB1 LINE L1 609 1047 -5816 14976 187 30 12 chr3 181706516 181711990 -45812588 + L1PB1 LINE L1 1093 6863 -4 487 129 0 0 chr3 181712000 181712070 -45812508 - MER101 LTR ERV1 -402 72 3 757 193 118 69 chr3 181712268 181712574 -45812004 + L1MC5 LINE L1 6913 7233 -728 263 158 13 40 chr3 181712655 181712731 -45811847 + L1MC5 LINE L1 7859 7932 -29 461 283 80 14 chr3 181713391 181713603 -45810975 + MIR SINE MIR 2 227 -35 286 305 61 38 chr3 181713835 181713966 -45810612 + L2 LINE L2 3106 3239 -33 548 287 87 12 chr3 181714113 181714367 -45810211 - L1ME4a LINE L1 -195 5926 5654 873 165 0 32 chr3 181714388 181714546 -45810032 - L1MD2 LINE L1 -15 6344 6192 383 327 44 71 chr3 181718157 181718496 -45806082 + L2 LINE L2 2942 3271 -1 325 331 12 58 chr3 181718523 181718695 -45805883 - MER5A DNA MER1_type -25 164 1 * 505 277 54 33 chr3 181718695 181718878 -45805700 + MIR3 SINE MIR 8 194 -14 1003 207 74 18 chr3 181719102 181719319 -45805259 + MLT1E LTR MaLR 8 236 -357 1117 198 109 37 chr3 181719327 181719572 -45805006 + MLT1E LTR MaLR 338 549 0 265 228 35 123 chr3 181719576 181719690 -45804888 - MLT1H LTR MaLR -16 533 430 279 279 0 0 chr3 181719836 181719904 -45804674 - MLT1I LTR MaLR -261 148 81 381 325 27 11 chr3 181719963 181720161 -45804417 - MIR SINE MIR -44 218 20 353 309 92 92 chr3 181720251 181720643 -45803935 + L2 LINE L2 2875 3266 -6 203 347 28 0 chr3 181721113 181721185 -45803393 - L2 LINE L2 -703 2611 2538 233 222 0 0 chr3 181721367 181721412 -45803166 + MIR SINE MIR 79 123 -139 2058 91 8 0 chr3 181721669 181721957 -45802621 - AluSq SINE Alu 0 309 20 680 336 37 30 chr3 181722217 181722480 -45802098 - L1ME3A LINE L1 -230 5940 5680 1338 167 19 5 chr3 181722480 181722696 -45801882 + MER20 DNA MER1_type 1 219 0 680 336 37 30 chr3 181722696 181722973 -45801605 - L1ME3A LINE L1 -490 5680 5396 236 321 46 46 chr3 181723031 181723227 -45801351 + MIR SINE MIR 66 261 -1 309 277 175 28 chr3 181723523 181723700 -45800878 - MIR SINE MIR -26 236 34 1039 126 0 0 chr3 181724814 181724957 -45799621 - AluJb SINE Alu -169 143 1 590 111 37 28 chr3 181724958 181725066 -45799512 - Tigger3(Golem) DNA MER2_type -644 2385 2277 * 638 213 0 0 chr3 181725057 181725165 -45799413 - Tigger3(Golem) DNA MER2_type -2921 108 1 302 322 111 12 chr3 181725881 181726052 -45798526 - MIR3 SINE MIR 0 208 21 2369 78 7 0 chr3 181726147 181726441 -45798137 + AluSp SINE Alu 1 296 -17 1140 276 54 9 chr3 181726543 181726858 -45797720 + MLT1I LTR MaLR 63 391 -18 685 301 111 22 chr3 181727484 181727846 -45796732 - L2 LINE L2 -25 3288 2895 353 219 49 0 chr3 181728555 181728637 -45795941 + MER4B-int LTR ERV1 1 86 -6672 4724 267 40 31 chr3 181728643 181730227 -45794351 + L1PBa LINE L1 38 1636 -5227 * 11031 165 25 13 chr3 181730195 181735136 -45789442 + L1PB3 LINE L1 1 6359 -1 189 154 0 0 chr3 181735510 181735549 -45789029 + (TG)n Simple_repeat Simple_repeat 2 40 0 1095 317 90 32 chr3 181735584 181736231 -45788347 - L2 LINE L2 -421 2893 2210 363 281 94 25 chr3 181737011 181737171 -45787407 - L2 LINE L2 -1118 2196 2026 1316 289 54 40 chr3 181737180 181737757 -45786821 + MLT1K LTR MaLR 1 585 -3 378 296 89 6 chr3 181737760 181737929 -45786649 - L2 LINE L2 -1293 2021 1839 510 222 15 52 chr3 181737998 181738133 -45786445 + MIR3 SINE MIR 15 144 -64 246 259 216 17 chr3 181739991 181740107 -45784471 + L2 LINE L2 2596 2734 -580 534 248 40 62 chr3 181740215 181740489 -45784089 + L1M4 LINE L1 5055 5322 -824 528 113 125 0 chr3 181742135 181742215 -45782363 + 5S rRNA rRNA 1 90 -31 26 50 0 0 chr3 181742234 181742274 -45782304 + AT_rich Low_complexity Low_complexity 1 40 0 337 136 68 0 chr3 181742509 181742568 -45782010 + MIR SINE MIR 101 163 -99 614 189 104 99 chr3 181743215 181743256 -45781322 - MLT1B LTR MaLR -170 204 165 245 75 25 0 chr3 181743256 181743296 -45781282 + (TTG)n Simple_repeat Simple_repeat 2 42 0 2101 109 0 0 chr3 181743301 181743584 -45780994 - AluSx SINE Alu -29 283 1 614 189 104 99 chr3 181743584 181743737 -45780841 - MLT1B LTR MaLR -212 162 3 195 252 83 58 chr3 181743943 181744070 -45780508 - MIR SINE MIR -63 145 52 353 203 51 0 chr3 181744171 181744250 -45780328 + MIR SINE MIR 110 192 -70 3016 161 16 4 chr3 181744872 181745374 -45779204 - MLT2B3 LTR ERVL -46 508 1 533 338 89 48 chr3 181745379 181745796 -45778782 + L2 LINE L2 2839 3272 0 790 291 58 10 chr3 181748016 181748311 -45776267 + L2 LINE L2 3005 3313 0 506 254 25 80 chr3 181748355 181748556 -45776022 - MIR SINE MIR -55 207 18 2426 66 14 0 chr3 181749005 181749294 -45775284 + AluSq SINE Alu 1 293 -20 225 324 213 13 chr3 181752248 181752473 -45772105 + L2 LINE L2 3003 3272 0 435 309 180 52 chr3 181753099 181753332 -45771246 + L2 LINE L2 1752 1954 -1360 2360 74 0 0 chr3 181753332 181753645 -45770933 - AluSq SINE Alu 0 313 1 435 309 180 52 chr3 181753645 181754399 -45770179 + L2 LINE L2 1954 2867 -447 277 229 0 0 chr3 181754815 181754885 -45769693 - MER104 DNA Tc2 -85 95 26 2858 10 0 0 chr3 181755173 181755482 -45769096 - AluYa5 SINE Alu -2 309 1 663 254 18 71 chr3 181757297 181757636 -45766942 - L1ME4a LINE L1 -254 5867 5547 533 296 54 109 chr3 181757649 181758109 -45766469 - L2 LINE L2 -6 3266 2832 1675 146 62 49 chr3 181758243 181758613 -45765965 - THE1C LTR MaLR 0 375 1 690 62 0 0 chr3 181760140 181760236 -45764342 + (TC)n Simple_repeat Simple_repeat 1 96 0 1873 142 24 10 chr3 181760402 181760697 -45763881 + AluJb SINE Alu 1 299 -13 1781 163 44 3 chr3 181761163 181761457 -45763121 + AluJo SINE Alu 4 309 -3 253 242 0 0 chr3 181761992 181762054 -45762524 + Charlie7 DNA MER1_type 30 91 -2521 22 0 0 0 chr3 181762214 181762236 -45762342 + AT_rich Low_complexity Low_complexity 1 22 0 1337 223 53 3 chr3 181762685 181762968 -45761610 + AluJo SINE Alu 13 309 -3 244 213 42 2 chr3 181765202 181765283 -45759295 + L1MC/D LINE L1 5436 5518 -724 25 51 0 0 chr3 181765799 181765838 -45758740 + AT_rich Low_complexity Low_complexity 1 39 0 2303 127 16 24 chr3 181767203 181767581 -45756997 + THE1C LTR MaLR 1 375 0 371 319 8 0 chr3 181769168 181769287 -45755291 + MIR3 SINE MIR 74 193 -15 1778 154 44 51 chr3 181769488 181769897 -45754681 + L1MA6 LINE L1 5891 6296 -4 6146 29 0 0 chr3 181770271 181771026 -45753552 - L1PA3 LINE L1 -1412 4734 3980 7617 26 5 0 chr3 181771026 181772457 -45752121 + L1PA3 LINE L1 4716 6150 -5 2386 88 0 0 chr3 181772727 181773033 -45751545 + AluSx SINE Alu 1 306 -6 1274 240 141 23 chr3 181773820 181773902 -45750676 - L2 LINE L2 0 3313 3242 2271 123 0 0 chr3 181773902 181774211 -45750367 + AluSg SINE Alu 1 309 -1 1274 240 141 23 chr3 181774211 181774809 -45749769 - L2 LINE L2 -71 3242 2531 231 178 44 0 chr3 181775303 181775348 -45749230 - L2 LINE L2 0 3272 3226 183 200 50 0 chr3 181775315 181775355 -45749223 - MIR SINE MIR -6 256 215 * 22 88 0 0 chr3 181775355 181775412 -45749166 + AT_rich Low_complexity Low_complexity 1 57 0 1501 288 36 47 chr3 181775615 181776227 -45748351 + L2 LINE L2 1929 2533 -781 403 365 65 6 chr3 181776329 181776499 -45748079 + L3 LINE CR1 320 499 -1078 348 321 78 42 chr3 181776501 181776859 -45747719 + L1ME LINE L1 5394 5764 -357 21 0 0 0 chr3 181777021 181777042 -45747536 + AT_rich Low_complexity Low_complexity 1 21 0 1009 218 30 5 chr3 181777123 181777320 -45747258 + AluJb SINE Alu 96 297 -15 679 363 96 22 chr3 181777338 181777839 -45746739 + L3 LINE CR1 1033 1570 -7 1900 211 139 0 chr3 181778251 181778734 -45745844 + MLT1G LTR MaLR 34 583 -7 219 233 0 0 chr3 181780316 181780359 -45744219 + GA-rich Low_complexity Low_complexity 1 43 0 602 317 117 49 chr3 181780830 181781275 -45743303 - L3 LINE CR1 -2 1575 1101 352 317 118 27 chr3 181781438 181781624 -45742954 - MIR SINE MIR -29 233 31 1071 174 0 28 chr3 181784433 181784651 -45739927 + AluJb SINE Alu 90 301 -11 287 323 61 0 chr3 181785702 181785801 -45738777 - L2 LINE L2 -32 3240 3136 574 281 214 14 chr3 181786585 181786945 -45737633 + L2 LINE L2 1786 2217 -1097 833 123 84 159 chr3 181786950 181787150 -45737428 + MER33 DNA MER1_type 5 172 -2413 2406 62 0 7 chr3 181787150 181787441 -45737137 + AluSc SINE Alu 1 289 -20 833 123 84 159 chr3 181787441 181787574 -45737004 + MER33 DNA MER1_type 172 313 -11 777 301 79 41 chr3 181787585 181788001 -45736577 + L2 LINE L2 2215 2646 -668 376 293 91 52 chr3 181788247 181788479 -45736099 - L1M4 LINE L1 -664 5510 5270 308 323 50 0 chr3 181788586 181788685 -45735893 + L2 LINE L2 2599 2702 -612 1685 178 45 0 chr3 181788759 181789051 -45735527 + AluJb SINE Alu 1 305 -7 427 256 37 18 chr3 181789542 181789706 -45734872 - L1MCc LINE L1 -6227 196 30 844 309 81 20 chr3 181789761 181790846 -45733732 - L1M4 LINE L1 -922 5224 4080 2510 196 108 83 chr3 181790855 181791533 -45733045 + L1MC4 LINE L1 7072 7781 -261 2010 83 14 14 chr3 181791533 181791810 -45732768 + AluSp SINE Alu 1 277 -36 2510 196 108 83 chr3 181791810 181792066 -45732512 + L1MC4 LINE L1 7781 8029 -13 196 339 46 0 chr3 181792092 181792157 -45732421 + L2 LINE L2 3187 3254 -18 296 309 114 47 chr3 181792674 181792823 -45731755 - L2 LINE L2 -183 3089 2931 1126 186 0 48 chr3 181793171 181793423 -45731155 + L1PB4 LINE L1 5910 6149 -7 1956 132 33 16 chr3 181793489 181793853 -45730725 - Tigger7 DNA MER2_type 0 2487 2118 4043 149 63 4 chr3 181793853 181794579 -45729999 - Tigger7 DNA MER2_type -1717 770 2 253 282 13 0 chr3 181795051 181795129 -45729449 + (TCTA)n Simple_repeat Simple_repeat 2 80 0 2020 134 0 10 chr3 181795298 181795611 -45728967 + AluSq SINE Alu 1 313 0 566 160 0 10 chr3 181795784 181795884 -45728694 + LTR41 LTR ERVL 74 172 -601 21 0 0 0 chr3 181796047 181796068 -45728510 + AT_rich Low_complexity Low_complexity 1 21 0 1129 253 62 47 chr3 181796662 181797007 -45727571 - L1MC4a LINE L1 -1937 5871 5518 1950 159 7 3 chr3 181797007 181797309 -45727269 + AluJb SINE Alu 1 303 -9 1129 253 62 47 chr3 181797309 181797367 -45727211 - L1MC4a LINE L1 -2290 5518 5462 30 45 0 0 chr3 181798396 181798440 -45726138 + AT_rich Low_complexity Low_complexity 1 44 0 34 42 0 0 chr3 181799313 181799361 -45725217 + AT_rich Low_complexity Low_complexity 1 48 0 1589 167 50 161 chr3 181799400 181799682 -45724896 - L1ME1 LINE L1 -189 5977 5808 1880 198 19 3 chr3 181799682 181800041 -45724537 - MLT1A1 LTR MaLR 0 365 1 1589 167 50 161 chr3 181800041 181800416 -45724162 - L1ME1 LINE L1 -358 5808 5393 2268 237 41 22 chr3 181800416 181801223 -45723355 - L1M4 LINE L1 -2832 3314 2493 1567 222 37 17 chr3 181801261 181801800 -45722778 - L1ME1 LINE L1 -970 5176 4618 627 245 41 7 chr3 181802594 181802741 -45721837 + MIR3 SINE MIR 47 198 -10 304 173 21 157 chr3 181802761 181802952 -45721626 - Charlie7 DNA MER1_type -29 2583 2419 285 226 137 16 chr3 181802959 181803083 -45721495 - Charlie7 DNA MER1_type -1906 706 568 1628 190 0 4 chr3 181803213 181803481 -45721097 + AluSx SINE Alu 1 267 -45 3426 153 18 0 chr3 181803590 181804133 -45720445 + MER68 LTR ERV1 1 553 -9 865 125 75 38 chr3 181804812 181804972 -45719606 + L1MD2 LINE L1 5858 6023 -336 22 35 0 0 chr3 181805024 181805053 -45719525 + AT_rich Low_complexity Low_complexity 1 29 0 496 322 113 7 chr3 181805828 181806111 -45718467 - L2 LINE L2 -737 2577 2265 1261 275 58 22 chr3 181806268 181806668 -45717910 + MLT1L LTR MaLR 202 615 0 27 29 0 0 chr3 181806684 181806718 -45717860 + AT_rich Low_complexity Low_complexity 1 34 0 382 159 0 0 chr3 181806726 181806795 -45717783 + L1MA4 LINE L1 6221 6289 -11 2343 106 0 0 chr3 181806957 181807260 -45717318 + AluY SINE Alu 1 303 -8 2208 135 0 0 chr3 181807506 181807818 -45716760 + AluSx SINE Alu 1 312 0 1032 290 75 4 chr3 181808319 181808803 -45715775 + L1MEc LINE L1 2103 2576 -3639 1806 130 0 4 chr3 181808814 181809076 -45715502 + AluSx SINE Alu 39 299 -13 2399 131 63 35 chr3 181810930 181811612 -45712966 + MER51A LTR ERV1 1 634 0 230 313 161 18 chr3 181813540 181813757 -45710821 - L2 LINE L2 -1529 1785 1538 199 255 0 0 chr3 181813804 181813851 -45710727 + MIR SINE MIR 47 93 -169 312 238 97 112 chr3 181814096 181814302 -45710276 - L2 LINE L2 0 3272 3070 601 245 60 0 chr3 181814721 181814872 -45709706 + MLT1G1 LTR MaLR 1 160 -435 309 333 0 44 chr3 181815760 181815906 -45708672 - MER5B DNA MER1_type -37 152 2 1795 155 170 12 chr3 181816211 181816553 -45708025 - MSTD LTR MaLR 0 396 1 288 266 145 75 chr3 181816553 181816952 -45707626 + HAL1 LINE L1 16 442 -2065 326 328 33 22 chr3 181816961 181817141 -45707437 + HAL1 LINE L1 537 718 -1789 356 243 147 62 chr3 181817157 181817334 -45707244 + HAL1 LINE L1 917 1108 -1399 400 235 20 0 chr3 181817344 181817446 -45707132 + HAL1 LINE L1 1681 1784 -723 891 256 77 5 chr3 181817455 181817862 -45706716 + HAL1 LINE L1 1867 2336 -171 250 120 20 40 chr3 181819513 181819563 -45705015 + AluSp SINE Alu 120 168 -135 1125 121 0 0 chr3 181819564 181819721 -45704857 + AluSg/x SINE Alu 151 307 -5 858 298 239 31 chr3 181820159 181820945 -45703633 - L2 LINE L2 -70 3202 2196 1019 199 29 15 chr3 181821131 181821337 -45703241 - MER3 DNA MER1_type 0 209 1 225 132 0 0 chr3 181821999 181822037 -45702541 + (TG)n Simple_repeat Simple_repeat 1 38 0 201 74 0 0 chr3 181822038 181822065 -45702513 + (GA)n Simple_repeat Simple_repeat 1 27 0 273 146 0 0 chr3 181822068 181822109 -45702469 + MLT2D LTR ERVL 374 414 0 624 304 127 0 chr3 181822167 181822387 -45702191 - L1MC/D LINE L1 -2053 5755 5508 245 333 166 22 chr3 181822415 181822818 -45701760 - L2 LINE L2 -1607 1707 1247 443 169 0 0 chr3 181823290 181823361 -45701217 + AluJ/FRAM SINE Alu 228 298 -14 295 321 65 12 chr3 181824746 181824914 -45699664 + L2 LINE L2 2620 2796 -518 1238 187 32 20 chr3 181824929 181825180 -45699398 - MLT1A1 LTR MaLR 0 365 112 526 307 69 69 chr3 181825716 181825990 -45698588 - L2 LINE L2 0 3272 2999 209 273 83 50 chr3 181826769 181826890 -45697688 - MIR3 SINE MIR -79 129 5 835 128 8 0 chr3 181827070 181827187 -45697391 - FLAM_C SINE Alu -25 118 1 184 352 57 0 chr3 181827453 181827541 -45697037 + MIR SINE MIR 158 250 -12 33 0 0 0 chr3 181828388 181828421 -45696157 + AT_rich Low_complexity Low_complexity 1 33 0 209 200 55 0 chr3 181828505 181828560 -45696018 + (TATATG)n Simple_repeat Simple_repeat 5 62 0 374 234 76 70 chr3 181829046 181829401 -45695177 + L1M4 LINE L1 2705 3057 -3089 8207 22 0 1 chr3 181829401 181830434 -45694144 + L1PA4 LINE L1 5122 6153 -2 374 234 76 70 chr3 181830434 181830540 -45694038 + L1M4 LINE L1 3057 3082 -3064 1784 149 47 14 chr3 181830540 181830836 -45693742 + AluJb SINE Alu 4 309 -3 374 234 76 70 chr3 181830836 181831019 -45693559 + L1M4 LINE L1 3082 3262 -2884 24 32 0 0 chr3 181831032 181831063 -45693515 + AT_rich Low_complexity Low_complexity 1 31 0 27 29 0 0 chr3 181831220 181831254 -45693324 + AT_rich Low_complexity Low_complexity 1 34 0 4778 138 25 35 chr3 181831508 181832297 -45692281 + L1MC1 LINE L1 5550 6330 -3 535 274 58 85 chr3 181832354 181832716 -45691862 + L1M4 LINE L1 3716 4061 -2085 2352 72 3 3 chr3 181832716 181833009 -45691569 + AluSp SINE Alu 12 304 -9 535 274 58 85 chr3 181833009 181833176 -45691402 + L1M4 LINE L1 4061 4231 -1915 459 161 25 0 chr3 181833178 181833259 -45691319 - MLT1E LTR MaLR -7 586 504 217 50 25 25 chr3 181834951 181834991 -45689587 + (TTTTA)n Simple_repeat Simple_repeat 1 40 0 6892 26 1 2 chr3 181834991 181835804 -45688774 - L1PA2 LINE L1 -24 6131 5319 1011 249 52 0 chr3 181835811 181836024 -45688554 - MER58A DNA MER1_type 0 224 1 318 254 97 30 chr3 181836047 181836211 -45688367 + MER112 DNA MER1_type 1 175 -85 459 92 0 15 chr3 181836211 181836276 -45688302 - MSTA LTR MaLR 0 428 365 1993 134 139 19 chr3 181836377 181836751 -45687827 - MSTA LTR MaLR -9 419 1 392 188 10 52 chr3 181836751 181836842 -45687736 + MER112 DNA MER1_type 161 247 -13 793 258 18 0 chr3 181837073 181837236 -45687342 - MER45A DNA AcHobo -3 175 10 2950 176 4 0 chr3 181837686 181838147 -45686431 - MLT1C LTR MaLR 0 467 5 382 243 109 29 chr3 181838338 181838542 -45686036 + MLT1L LTR MaLR 109 394 -221 226 304 22 0 chr3 181838726 181838818 -45685760 - MER103 DNA DNA -6 160 67 197 247 0 26 chr3 181838870 181838947 -45685631 + CT-rich Low_complexity Low_complexity 2 76 0 193 315 94 60 chr3 181839929 181840078 -45684500 + MIR SINE MIR 32 185 -77 198 350 88 0 chr3 181840100 181840180 -45684398 + L2 LINE L2 3186 3272 0 856 263 119 75 chr3 181840686 181841556 -45683022 - L2 LINE L2 -1 3312 2364 722 79 0 0 chr3 181841994 181842083 -45682495 + AluY SINE Alu 207 295 -16 21 57 0 0 chr3 181842400 181842435 -45682143 + AT_rich Low_complexity Low_complexity 1 35 0 3680 68 23 0 chr3 181842505 181842948 -45681630 - MLT2A2 LTR ERVL 0 453 1 1018 255 79 43 chr3 181843648 181844067 -45680511 - MLT1C LTR MaLR 0 467 34 383 227 0 11 chr3 181844079 181844167 -45680411 + L1MC4a LINE L1 7650 7736 -72 197 333 91 0 chr3 181844286 181844352 -45680226 + MER5A DNA MER1_type 87 158 -31 2281 105 0 3 chr3 181845062 181845358 -45679220 + AluSg SINE Alu 1 295 -15 351 0 0 0 chr3 181847276 181847315 -45677263 + (CA)n Simple_repeat Simple_repeat 2 40 0 191 145 58 29 chr3 181848983 181849052 -45675526 + CT-rich Low_complexity Low_complexity 5 75 0 725 244 93 36 chr3 181849409 181849827 -45674751 - L1MC5 LINE L1 -31 7930 7489 451 253 142 62 chr3 181849857 181850019 -45674559 - MER5A DNA MER1_type -6 183 9 348 260 48 0 chr3 181850033 181850137 -45674441 - L1MC5 LINE L1 -529 7432 7324 3657 106 36 82 chr3 181850237 181850869 -45673709 - LTR26 LTR ERV1 0 603 1 868 253 23 14 chr3 181850992 181851213 -45673365 - MIR SINE MIR 0 262 40 1123 251 79 77 chr3 181851617 181852071 -45672507 - MER77 LTR ERV1 -6 599 145 550 252 60 13 chr3 181852058 181852209 -45672369 - MER77 LTR ERV1 -395 210 53 * 247 283 40 40 chr3 181852471 181852570 -45672008 - U2 snRNA snRNA -86 102 4 230 286 36 0 chr3 181852992 181853048 -45671530 + L2 LINE L2 3188 3245 -27 3766 188 20 22 chr3 181853414 181854272 -45670306 - L1MB8 LINE L1 0 6178 5318 240 111 0 0 chr3 181854777 181854813 -45669765 + (CA)n Simple_repeat Simple_repeat 1 36 0 326 305 75 69 chr3 181854842 181855417 -45669161 - L2 LINE L2 -12 3260 2622 247 302 105 23 chr3 181856112 181856198 -45668380 + L2 LINE L2 3219 3311 -2 700 269 64 21 chr3 181856207 181856319 -45668259 - MIR SINE MIR -17 245 139 1205 161 89 7 chr3 181856319 181856611 -45667967 - MER33 DNA MER1_type -4 320 5 700 269 64 21 chr3 181856611 181856732 -45667846 - MIR SINE MIR -123 139 2 406 243 34 27 chr3 181857403 181857551 -45667027 - MLT1G1 LTR MaLR -7 548 400 281 276 0 0 chr3 181857557 181857615 -45666963 + Tigger3(Golem) DNA MER2_type 1 58 -2971 2305 128 124 9 chr3 181857624 181858069 -45666509 + Tigger3(Golem) DNA MER2_type 2534 3029 0 511 218 85 65 chr3 181858144 181858450 -45666128 - MLT1G1 LTR MaLR -302 247 10 472 159 128 0 chr3 181858838 181858990 -45665588 + LTR33A LTR ERVL 443 523 0 2377 135 17 60 chr3 181858995 181859409 -45665169 - MSTD LTR MaLR 0 396 1 184 277 143 50 chr3 181860382 181860501 -45664077 + MIR SINE MIR 17 146 -62 324 0 0 0 chr3 181862523 181862559 -45662019 + (CA)n Simple_repeat Simple_repeat 2 37 0 1756 176 101 25 chr3 181862763 181863200 -45661378 - Charlie1b DNA MER1_type 0 523 54 475 191 35 52 chr3 181863290 181863405 -45661173 + MIR SINE MIR 21 133 -129 231 61 0 0 chr3 181863405 181863438 -45661140 + (TTTAA)n Simple_repeat Simple_repeat 3 35 0 31317 100 8 52 chr3 181863439 181869858 -45654720 - L1PA7 LINE L1 -11 6143 12 305 299 77 8 chr3 181869873 181869990 -45654588 + MIR SINE MIR 122 246 -16 215 258 180 11 chr3 181870023 181870112 -45654466 + MIR3 SINE MIR 98 201 -7 2277 109 0 0 chr3 181871050 181871353 -45653225 - AluSx SINE Alu -9 303 1 222 232 0 36 chr3 181872395 181872451 -45652127 + L2 LINE L2 3210 3263 -9 684 253 80 85 chr3 181872788 181873199 -45651379 + MLT1I LTR MaLR 1 409 0 228 333 32 41 chr3 181873269 181873392 -45651186 - MER5A DNA MER1_type -7 182 61 26 30 0 0 chr3 181874045 181874078 -45650500 + AT_rich Low_complexity Low_complexity 1 33 0 1145 243 73 60 chr3 181874620 181875175 -45649403 + MER34B LTR ERV1 1 542 0 1129 320 55 28 chr3 181875344 181875837 -45648741 - MLT1K LTR MaLR -81 507 2 576 215 23 0 chr3 181876436 181876566 -45648012 + MIR SINE MIR 127 259 -3 21 0 0 0 chr3 181876696 181876717 -45647861 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 181878010 181878040 -45646538 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr3 181878169 181878199 -45646379 + AT_rich Low_complexity Low_complexity 1 30 0 210 343 19 0 chr3 181878644 181878752 -45645826 - L2 LINE L2 -996 2318 2209 2168 139 0 0 chr3 181878769 181879078 -45645500 - AluSx SINE Alu -3 309 1 241 267 17 0 chr3 181879115 181879175 -45645403 - L2 LINE L2 -4 3268 3208 182 362 31 31 chr3 181880050 181880177 -45644401 + L2 LINE L2 2252 2378 -936 524 293 69 43 chr3 181880797 181880985 -45643593 - MIR SINE MIR -50 212 20 189 0 0 0 chr3 181884155 181884176 -45640402 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 28 29 0 0 chr3 181884176 181884211 -45640367 + AT_rich Low_complexity Low_complexity 1 35 0 2063 101 24 7 chr3 181884617 181884904 -45639674 + AluSg SINE Alu 13 304 -6 302 287 74 0 chr3 181885297 181885419 -45639159 + L1MC/D LINE L1 5622 5752 -2056 214 182 0 0 chr3 181886129 181886173 -45638405 + T-rich Low_complexity Low_complexity 1 44 0 816 118 0 0 chr3 181886357 181886467 -45638111 + AluSp/q SINE Alu 176 285 -28 367 317 7 21 chr3 181887170 181887315 -45637263 + MIR3 SINE MIR 42 184 -24 245 267 56 33 chr3 181887646 181887736 -45636842 + L2 LINE L2 3181 3272 0 749 220 52 101 chr3 181887824 181888110 -45636468 + L2 LINE L2 3042 3313 0 7474 35 0 4 chr3 181888873 181890306 -45634272 - L1PA4 LINE L1 -1 6154 4725 250 204 106 23 chr3 181891482 181891614 -45632964 - L1ME4a LINE L1 -11 6110 5968 1055 203 22 0 chr3 181891990 181892206 -45632372 - LTR40a LTR ERVL 0 519 241 186 258 16 48 chr3 181893393 181893455 -45631123 - L2 LINE L2 -74 3239 3180 2368 78 7 0 chr3 181893491 181893786 -45630792 - AluY SINE Alu -14 297 1 9021 20 1 1 chr3 181893969 181895452 -45629126 + L1P1 LINE L1 4267 5750 -405 981 151 11 22 chr3 181895553 181895738 -45628840 - THE1C LTR MaLR -192 183 1 234 0 0 0 chr3 181896168 181896194 -45628384 + (T)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr3 181896982 181897003 -45627575 + AT_rich Low_complexity Low_complexity 1 21 0 230 0 33 0 chr3 181897095 181897125 -45627453 + (TTTTA)n Simple_repeat Simple_repeat 4 34 0 2521 7 0 0 chr3 181897125 181897420 -45627158 - L1HS LINE L1 -16 6139 5845 495 209 0 0 chr3 181898694 181898785 -45625793 - L1PA15-16 LINE L1 -6038 811 721 1169 97 151 5 chr3 181898787 181898993 -45625585 - L1M1 LINE L1 -529 5776 5541 375 107 0 0 chr3 181898993 181899049 -45625529 - MSTA LTR MaLR 0 428 373 1603 54 13 8 chr3 181899150 181899389 -45625189 - L1P LINE L1 -5906 240 1 2197 202 20 41 chr3 181903313 181903873 -45620705 - LTR55 LTR ERV 0 548 1 543 339 106 19 chr3 181905404 181905782 -45618796 - L2 LINE L2 -1109 2205 1795 315 219 0 152 chr3 181905892 181906116 -45618462 + HsTC2 DNA Tc2 98 287 -1611 565 200 144 56 chr3 181906575 181906770 -45617808 - L1ME3 LINE L1 -1 6161 5950 3068 95 42 0 chr3 181906887 181907362 -45617216 - L1MA3 LINE L1 -36 6269 5775 972 145 19 0 chr3 181907373 181907532 -45617046 - L1PA16 LINE L1 -11 6155 5994 1604 183 13 48 chr3 181907682 181908060 -45616518 + MLT1A1 LTR MaLR 1 365 0 823 31 0 0 chr3 181908845 181908943 -45615635 + L1P LINE L1 1 98 -6048 * 35228 43 32 3 chr3 181908912 181913386 -45611192 + L1P LINE L1 580 5181 -965 1554 251 140 29 chr3 181913486 181914116 -45610462 - L2 LINE L2 -568 2746 2047 1329 211 52 0 chr3 181914191 181914461 -45610117 - MER21B LTR ERV1 -69 794 511 1562 220 22 25 chr3 181914724 181915088 -45609490 + MLT1A1 LTR MaLR 1 363 -2 752 233 72 0 chr3 181915215 181915419 -45609159 - MIR SINE MIR 0 262 40 231 36 0 0 chr3 181915609 181915637 -45608941 + (A)n Simple_repeat Simple_repeat 1 28 0 338 260 125 31 chr3 181916549 181916741 -45607837 - MIR SINE MIR -6 256 47 204 67 0 0 chr3 181917254 181917284 -45607294 + (TG)n Simple_repeat Simple_repeat 2 31 0 502 246 162 37 chr3 181917756 181917947 -45606631 + MIR SINE MIR 47 261 -1 545 302 80 85 chr3 181917967 181918331 -45606247 + L2 LINE L2 2907 3268 -4 2174 114 0 3 chr3 181921915 181922213 -45602365 - AluSx SINE Alu -15 297 1 819 260 143 37 chr3 181922708 181923115 -45601463 - MLT1J2 LTR MaLR 0 450 1 941 163 13 84 chr3 181923326 181923386 -45601192 + AluJb SINE Alu 87 150 -213 2063 77 0 37 chr3 181923386 181923684 -45600894 + L1PA7 LINE L1 5868 6154 0 941 163 13 84 chr3 181923684 181923916 -45600662 + AluJb SINE Alu 150 363 0 480 239 194 0 chr3 181924160 181924294 -45600284 - MER5A DNA MER1_type -21 168 9 383 330 0 0 chr3 181924301 181924416 -45600162 + MER117 DNA MER1_type 57 171 -26 368 341 106 46 chr3 181924443 181924810 -45599768 - L2 LINE L2 -4 3309 2921 204 282 0 64 chr3 181924853 181924931 -45599647 + MIR SINE MIR 19 91 -117 341 308 22 11 chr3 181924966 181925057 -45599521 - L2 LINE L2 -31 3241 3150 222 243 122 27 chr3 181925057 181925131 -45599447 + MIR SINE MIR 111 191 -71 691 280 55 17 chr3 181925437 181925673 -45598905 - L2 LINE L2 -192 3121 2877 198 318 0 0 chr3 181925674 181925718 -45598860 - MIR SINE MIR -57 151 108 914 229 115 41 chr3 181925736 181926152 -45598426 - MLT1J2 LTR MaLR 0 446 3 7640 17 1 0 chr3 181928105 181929190 -45595388 + L1PA2 LINE L1 5110 6195 0 1766 191 70 43 chr3 181929263 181929751 -45594827 + MLT1D LTR MaLR 5 505 0 2203 117 0 10 chr3 181929753 181930061 -45594517 + AluSx SINE Alu 3 307 -5 190 282 12 94 chr3 181930964 181931049 -45593529 + MIR SINE MIR 19 96 -112 1082 221 53 18 chr3 181931144 181931429 -45593149 - MER113 DNA MER1_type? -72 449 155 263 62 0 0 chr3 181931936 181931968 -45592610 - FLAM_A SINE Alu -14 119 88 2851 73 0 0 chr3 181931968 181932323 -45592255 - THE1A LTR MaLR 0 355 1 10994 92 37 1 chr3 181932323 181933847 -45590731 - THE1A-int LTR MaLR 0 1580 1 1680 92 0 0 chr3 181933847 181934065 -45590513 - THE1A LTR MaLR 0 355 138 365 168 16 2 chr3 181934167 181934238 -45590340 - FLAM_A SINE Alu -71 61 2 238 145 0 84 chr3 181934593 181934676 -45589902 + (TA)n Simple_repeat Simple_repeat 1 76 0 296 85 0 0 chr3 181934686 181934733 -45589845 + L1MA3 LINE L1 6259 6305 0 472 281 43 0 chr3 181934870 181935009 -45589569 - MIR SINE MIR -111 151 7 1900 88 4 0 chr3 181935035 181935275 -45589303 - AluSq SINE Alu -14 299 59 616 258 101 14 chr3 181935603 181935812 -45588766 + MIR SINE MIR 36 262 0 279 360 78 7 chr3 181935816 181935969 -45588609 + L2 LINE L2 3101 3264 -8 23 0 0 0 chr3 181938779 181938802 -45585776 + AT_rich Low_complexity Low_complexity 1 23 0 21 57 0 0 chr3 181939438 181939473 -45585105 + AT_rich Low_complexity Low_complexity 1 35 0 538 232 28 7 chr3 181939898 181940040 -45584538 + MER69 DNA AcHobo 2381 2525 -1 289 176 0 0 chr3 181940107 181940158 -45584420 - MER94 DNA DNA -49 85 35 1608 154 41 0 chr3 181940170 181940436 -45584142 + AluJo SINE Alu 13 289 -23 249 175 0 0 chr3 181940453 181940493 -45584085 - MER94 DNA DNA -94 40 1 828 234 46 50 chr3 181940494 181940604 -45583974 + MIR SINE MIR 4 113 -149 2044 174 154 11 chr3 181940604 181941017 -45583561 + MLT2B1 LTR ERVL 1 354 -166 411 38 0 0 chr3 181941017 181941070 -45583508 + (TC)n Simple_repeat Simple_repeat 2 54 0 369 0 0 0 chr3 181941069 181941110 -45583468 + (TA)n Simple_repeat Simple_repeat 2 42 0 * 2044 174 154 11 chr3 181941070 181941151 -45583427 + MLT2B1 LTR ERVL 354 520 0 828 234 46 50 chr3 181941151 181941279 -45583299 + MIR SINE MIR 113 241 -21 537 307 17 34 chr3 181941530 181941768 -45582810 + L3 LINE CR1 1344 1577 0 217 362 53 11 chr3 181942454 181942548 -45582030 - MIR3 SINE MIR -15 193 96 716 279 32 60 chr3 181942745 181943061 -45581517 + L1MC4a LINE L1 5482 5788 -333 28 48 0 0 chr3 181943198 181943240 -45581338 + AT_rich Low_complexity Low_complexity 1 42 0 1777 124 15 0 chr3 181943819 181944085 -45580493 + Tigger2 DNA MER2_type 272 541 -2177 443 300 84 35 chr3 181944109 181944512 -45580066 + L1MEd LINE L1 569 991 -5128 295 309 8 0 chr3 181944592 181944715 -45579863 + L1MEd LINE L1 1129 1252 -5058 505 251 21 45 chr3 181945247 181945490 -45579088 + L1MEd LINE L1 2115 2351 -3778 641 318 56 22 chr3 181946400 181946863 -45577715 + HAL1b LINE L1 165 643 -705 243 289 10 19 chr3 181946937 181947041 -45577537 + HAL1b LINE L1 758 860 -488 321 326 138 61 chr3 181947468 181947977 -45576601 + L1MC4a LINE L1 5901 6448 -1360 383 282 136 15 chr3 181948063 181948269 -45576309 + L1MC4a LINE L1 6553 6783 -1025 263 269 146 77 chr3 181948450 181948855 -45575723 + L1MC5 LINE L1 6966 7398 -563 819 117 55 0 chr3 181948949 181949094 -45575484 + L1PA7 LINE L1 5227 5379 -767 1063 83 0 0 chr3 181949095 181949240 -45575338 + L1PA7 LINE L1 5929 6073 -81 3170 96 9 0 chr3 181949250 181949697 -45574881 + L1P4 LINE L1 5337 5787 -374 3807 54 20 16 chr3 181949697 181950192 -45574386 + L1PA7 LINE L1 5641 6145 -9 2212 117 78 16 chr3 181950199 181950585 -45573993 + L1PA13 LINE L1 5752 6161 -2 2454 93 0 0 chr3 181950595 181950906 -45573672 + AluY SINE Alu 1 311 0 425 184 103 0 chr3 181950987 181951074 -45573504 - FRAM SINE Alu -21 155 60 557 321 67 47 chr3 181951212 181951657 -45572921 + L1ME3A LINE L1 4927 5380 -766 240 227 52 52 chr3 181951803 181951900 -45572678 + L1ME3A LINE L1 5842 5938 -232 1955 216 48 40 chr3 181952909 181953452 -45571126 + Tigger8 DNA MER2_type 1 547 -119 901 265 58 75 chr3 181953545 181953960 -45570618 + L2 LINE L2 2072 2479 -835 2041 165 9 3 chr3 181954067 181954400 -45570178 - MSTA LTR MaLR -93 335 1 1822 121 28 12 chr3 181954400 181954935 -45569643 - L1M1 LINE L1 -743 5403 5003 13053 192 21 42 chr3 181954950 181959245 -45565333 + L1P4 LINE L1 578 4779 -2070 900 86 179 16 chr3 181959349 181959581 -45564997 - LTR14B LTR ERVK -225 383 1 4891 172 24 20 chr3 181959586 181961191 -45563387 + L1P4 LINE L1 4873 6490 -379 392 344 16 60 chr3 181961294 181961608 -45562970 + MER115 DNA AcHobo 148 447 -246 394 336 8 15 chr3 181964620 181964754 -45559824 + L2 LINE L2 3178 3310 -3 220 288 68 0 chr3 181964786 181964845 -45559733 - L2 LINE L2 -64 3208 3146 344 301 145 26 chr3 181964887 181965080 -45559498 - MIR SINE MIR -13 249 34 1261 171 68 4 chr3 181965261 181965524 -45559054 + MSTD-int LTR MaLR 1456 1735 0 1901 159 99 11 chr3 181965524 181965888 -45558690 + MSTD LTR MaLR 1 396 0 181 176 0 0 chr3 181966950 181966984 -45557594 - MER5A DNA MER1_type -24 165 132 444 37 0 0 chr3 181969193 181969247 -45555331 + (TG)n Simple_repeat Simple_repeat 1 54 0 707 235 115 70 chr3 181971981 181972224 -45552354 - MIR SINE MIR 0 262 9 741 316 108 8 chr3 181972303 181972702 -45551876 - LTR16A LTR ERVL -9 441 3 544 246 78 7 chr3 181972740 181972882 -45551696 + MER96 DNA MER1_type? 16 167 -8 287 341 84 6 chr3 181972988 181973167 -45551411 + L2 LINE L2 2624 2816 -498 263 345 97 27 chr3 181973476 181973775 -45550803 - L2 LINE L2 -568 2746 2427 26 0 0 0 chr3 181974144 181974170 -45550408 + AT_rich Low_complexity Low_complexity 1 26 0 471 241 71 29 chr3 181975078 181975248 -45549330 - MIR SINE MIR -50 212 36 276 255 370 16 chr3 181975897 181976081 -45548497 + MIR SINE MIR 3 251 -11 838 236 62 21 chr3 181976108 181976349 -45548229 + MIR SINE MIR 1 251 -11 558 289 38 32 chr3 181976651 181976994 -45547584 + L1MC/D LINE L1 5536 5886 -284 192 318 73 36 chr3 181977782 181977892 -45546686 - MIR SINE MIR -50 212 99 587 273 116 32 chr3 181978140 181978356 -45546222 + MIR SINE MIR 15 248 -14 21 0 0 0 chr3 181978366 181978387 -45546191 + AT_rich Low_complexity Low_complexity 1 21 0 367 241 90 28 chr3 181979195 181979340 -45545238 - L1ME LINE L1 -437 5684 5531 655 281 77 5 chr3 181979956 181980177 -45544401 - MIR SINE MIR -6 256 20 805 263 167 21 chr3 181980314 181980751 -45543827 - MLT1L LTR MaLR 0 615 115 545 242 19 19 chr3 181981610 181981767 -45542811 - MIR SINE MIR -3 259 103 2452 209 25 10 chr3 181982264 181983128 -45541450 + L1MD2 LINE L1 4929 5807 -552 2319 184 30 15 chr3 181983142 181983604 -45540974 + L1MD2 LINE L1 5872 6340 -19 212 273 169 29 chr3 181983649 181983821 -45540757 - L2 LINE L2 -955 2359 2164 740 255 52 0 chr3 181983832 181984024 -45540554 - MIR SINE MIR 0 262 61 6378 23 0 0 chr3 181984272 181985041 -45539537 - L1PA3 LINE L1 0 6155 5387 528 16 0 0 chr3 181985146 181985207 -45539371 + (TA)n Simple_repeat Simple_repeat 1 61 0 251 315 20 94 chr3 181985810 181985959 -45538619 + L3 LINE CR1 1437 1574 -3 643 246 23 0 chr3 181986213 181986343 -45538235 - L2 LINE L2 -1 3271 3139 282 347 24 16 chr3 181986415 181986539 -45538039 - MIR SINE MIR -34 228 104 755 291 45 0 chr3 181986957 181987201 -45537377 - MIR SINE MIR -6 256 2 372 212 0 0 chr3 181988651 181988736 -45535842 - Charlie7 DNA MER1_type -2521 91 7 638 307 153 11 chr3 181988762 181989140 -45535438 - MLT1J2 LTR MaLR -18 432 1 299 264 86 50 chr3 181989250 181989470 -45535108 - MLT1J LTR MaLR -11 500 273 1856 159 19 19 chr3 181989662 181989970 -45534608 - AluJo SINE Alu -4 308 1 1464 205 19 48 chr3 181990474 181990850 -45533728 - MLT1A1 LTR MaLR 0 365 1 444 265 19 113 chr3 181991999 181992256 -45532322 + MER115 DNA AcHobo 305 537 -156 316 300 150 28 chr3 181992704 181992991 -45531587 + L2 LINE L2 2538 2859 -455 296 403 7 21 chr3 181993169 181993313 -45531265 + L2 LINE L2 3118 3259 -13 189 74 0 0 chr3 181993313 181993340 -45531238 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 438 296 30 7 chr3 181993409 181993544 -45531034 - MIR SINE MIR -24 238 101 3117 169 57 7 chr3 181993544 181994161 -45530417 + L1MC3 LINE L1 7132 7779 -6 233 240 53 27 chr3 181994171 181994246 -45530332 - MIR SINE MIR -169 93 17 491 313 77 18 chr3 181994681 181994923 -45529655 + MIR SINE MIR 1 256 -6 229 376 110 0 chr3 181995018 181995127 -45529451 + L2 LINE L2 3133 3253 -19 271 277 203 17 chr3 181995851 181996028 -45528550 + MIR SINE MIR 53 262 0 328 268 31 9 chr3 181997687 181997811 -45526767 - MIR SINE MIR -65 143 29 1055 169 0 0 chr3 181998282 181998466 -45526112 - L1MD2 LINE L1 -34 6325 6142 370 204 133 10 chr3 181998723 181998821 -45525757 + MIR SINE MIR 123 232 -30 246 322 67 11 chr3 181998853 181998943 -45525635 - L2 LINE L2 -4 3268 3174 450 276 21 28 chr3 181999298 181999443 -45525135 + MIR SINE MIR 8 151 -111 398 332 65 9 chr3 181999510 181999724 -45524854 + LTR33 LTR ERVL 23 248 -273 340 307 54 18 chr3 181999797 181999963 -45524615 + LTR33 LTR ERVL 350 521 0 24 32 0 0 chr3 181999974 182000005 -45524573 + AT_rich Low_complexity Low_complexity 1 31 0 189 0 0 0 chr3 182000144 182000165 -45524413 + (CA)n Simple_repeat Simple_repeat 2 22 0 243 330 18 36 chr3 182000788 182000900 -45523678 - MIR3 SINE MIR -6 202 93 271 86 0 35 chr3 182001104 182001162 -45523416 + (TTTC)n Simple_repeat Simple_repeat 2 57 0 1739 229 24 91 chr3 182001991 182002607 -45521971 - MLT1E LTR MaLR 0 593 19 654 218 181 65 chr3 182003614 182004000 -45520578 - MLT1J2 LTR MaLR -19 431 1 768 268 35 22 chr3 182004106 182004337 -45520241 - MIR SINE MIR -21 241 8 240 305 48 0 chr3 182004410 182004515 -45520063 - MIR SINE MIR -87 175 66 1840 171 61 6 chr3 182004680 182005026 -45519552 - MLT1A1 LTR MaLR 0 365 1 2237 126 0 0 chr3 182005178 182005479 -45519099 + AluSg SINE Alu 1 301 -9 200 310 23 27 chr3 182006210 182006341 -45518237 - MIR SINE MIR -56 206 79 207 306 16 16 chr3 182008077 182008139 -45516439 - MIR SINE MIR -109 99 38 22 0 0 30 chr3 182008167 182008186 -45516392 + AT_rich Low_complexity Low_complexity 1 20 -12 1650 136 39 0 chr3 182008186 182008472 -45516106 - L1MC1 LINE L1 -2 6331 6035 22 0 0 30 chr3 182008472 182008485 -45516093 + AT_rich Low_complexity Low_complexity 20 32 0 469 340 19 0 chr3 182008808 182008967 -45515611 + MIR SINE MIR 2 163 -99 318 193 0 48 chr3 182008967 182009050 -45515528 - MLT1C LTR MaLR 0 467 389 * 674 275 30 34 chr3 182009047 182009309 -45515269 - LTR40c LTR ERVL -202 263 3 364 320 58 18 chr3 182009420 182009645 -45514933 - L2 LINE L2 -359 2955 2722 181 129 0 32 chr3 182009946 182009977 -45514601 - MIR SINE MIR -15 247 218 2152 103 0 3 chr3 182010632 182010914 -45513664 - AluSx SINE Alu -31 281 1 27 0 0 0 chr3 182010926 182010953 -45513625 + AT_rich Low_complexity Low_complexity 1 27 0 1108 240 10 91 chr3 182011964 182012360 -45512218 - MLT1A1 LTR MaLR -1 364 1 325 374 9 0 chr3 182012381 182012496 -45512082 - MIR3 SINE MIR -79 129 14 225 410 8 8 chr3 182012700 182012822 -45511756 - MIR3 SINE MIR -85 123 2 387 41 0 0 chr3 182012838 182012887 -45511691 + (CA)n Simple_repeat Simple_repeat 2 50 0 277 357 56 16 chr3 182014718 182014844 -45509734 + MIR3 SINE MIR 7 137 -71 778 215 0 13 chr3 182016125 182016274 -45508304 + MER5A DNA MER1_type 2 148 -41 234 348 69 34 chr3 182018001 182018205 -45506373 + L2 LINE L2 2758 2968 -346 1083 197 77 15 chr3 182018327 182018601 -45505977 - LTR16C LTR ERVL -11 480 190 297 0 0 0 chr3 182018780 182018813 -45505765 + (CA)n Simple_repeat Simple_repeat 2 34 0 292 326 65 11 chr3 182018840 182018932 -45505646 + L2 LINE L2 3208 3304 -9 2263 90 3 0 chr3 182019842 182020130 -45504448 - AluY SINE Alu -22 289 1 262 274 87 10 chr3 182070265 182070388 -45454190 - MERVL LTR ERVL -1341 4144 4027 1207 290 38 30 chr3 182070398 182070770 -45453808 - MERVL LTR ERVL -3050 1946 1572 1826 280 63 46 chr3 182070826 182071241 -45453337 - MERVL LTR ERVL -3574 1422 989 2257 116 0 0 chr3 182071241 182071535 -45453043 + AluSg SINE Alu 1 294 -16 1826 280 63 46 chr3 182071535 182071819 -45452759 - MERVL LTR ERVL -4007 989 711 838 295 19 23 chr3 182072354 182072612 -45451966 - MIR SINE MIR 0 262 6 544 256 8 0 chr3 182072797 182072914 -45451664 + MER5B DNA MER1_type 5 122 -56 258 360 98 46 chr3 182073225 182073531 -45451047 + L2 LINE L2 2943 3264 -8 1644 175 34 9 chr3 182073550 182073870 -45450708 - LTR2B LTR ERV1 0 490 163 21 0 0 0 chr3 182073870 182073891 -45450687 + AT_rich Low_complexity Low_complexity 1 21 0 715 215 19 68 chr3 182073891 182074096 -45450482 - LTR2 LTR ERV1 -254 195 1 338 273 60 51 chr3 182074444 182074660 -45449918 + L2 LINE L2 2075 2292 -1022 574 226 84 26 chr3 182074660 182074815 -45449763 - MLT1J2 LTR MaLR -7 443 280 1105 324 71 31 chr3 182074875 182075722 -45448856 + L2 LINE L2 2422 3312 -1 2363 208 80 53 chr3 182076587 182077135 -45447443 - MLT1F1 LTR MaLR -2 565 3 240 330 18 45 chr3 182078235 182078347 -45446231 - L2 LINE L2 0 3272 3164 256 282 105 44 chr3 182078925 182079106 -45445472 - MLT1K LTR MaLR -290 298 107 2398 100 3 0 chr3 182079233 182079544 -45445034 + AluSq SINE Alu 1 312 -1 783 191 38 6 chr3 182079545 182079728 -45444850 - L1MC2 LINE L1 -5 6339 6151 384 157 200 0 chr3 182079735 182079850 -45444728 - L1MC3 LINE L1 -184 7601 7464 244 208 28 56 chr3 182081430 182081502 -45443076 - L2 LINE L2 -8 3305 3236 587 279 120 5 chr3 182081788 182081996 -45442582 + MIR SINE MIR 25 252 -10 321 286 29 9 chr3 182081998 182082103 -45442475 - MLT1J2 LTR MaLR 0 450 344 1206 305 51 3 chr3 182083480 182083870 -45440708 - LTR16A LTR ERVL -26 424 16 326 333 20 20 chr3 182084027 182084174 -45440404 - HERVL LTR ERVL -328 5326 5180 480 279 82 43 chr3 182084624 182084832 -45439746 - HERVL LTR ERVL -1218 4546 4331 737 216 43 6 chr3 182085111 182085273 -45439305 - MIR SINE MIR -91 171 4 293 354 134 10 chr3 182085667 182085876 -45438702 + L2 LINE L2 2493 2727 -587 919 271 30 30 chr3 182086054 182086390 -45438188 - MER102b DNA MER1_type -1 340 5 2206 197 66 21 chr3 182087494 182087977 -45436601 + MLT1D LTR MaLR 1 505 0 768 250 80 0 chr3 182088253 182088441 -45436137 + MIR SINE MIR 2 204 -58 186 189 0 0 chr3 182088456 182088493 -45436085 + (TATATG)n Simple_repeat Simple_repeat 6 42 0 220 299 0 0 chr3 182088496 182088563 -45436015 + MIR SINE MIR 185 251 -11 246 81 0 0 chr3 182089900 182089937 -45434641 + (TG)n Simple_repeat Simple_repeat 2 38 0 1130 16 0 0 chr3 182090023 182090151 -45434427 - AluYa5/8 SINE Alu -2 308 181 322 250 30 40 chr3 182090359 182090459 -45434119 + MIR3 SINE MIR 15 113 -95 802 144 0 96 chr3 182091054 182091200 -45433378 - FLAM_A SINE Alu -1 132 1 262 268 71 63 chr3 182091706 182091833 -45432745 - MIR SINE MIR -63 145 18 1178 262 55 76 chr3 182092520 182093101 -45431477 - MLT1G LTR MaLR -6 584 16 1541 232 83 78 chr3 182093524 182094074 -45430504 - MER77 LTR ERV1 -6 599 54 394 202 32 57 chr3 182095083 182095207 -45429371 + LTR67 LTR ERVL 429 549 -8 804 264 86 52 chr3 182097074 182097357 -45427221 + MLT1C LTR MaLR 1 300 -167 2291 204 80 106 chr3 182097357 182098205 -45426373 + LTR1B LTR ERV1 1 826 0 804 264 86 52 chr3 182098205 182098270 -45426308 + MLT1C LTR MaLR 300 361 -106 3352 206 87 16 chr3 182098518 182099076 -45425502 + MER97a DNA MER1_type? 10 648 -246 1951 115 7 14 chr3 182099076 182099371 -45425207 - AluSp SINE Alu -20 293 1 3352 206 87 16 chr3 182099371 182099638 -45424940 + MER97a DNA MER1_type? 648 894 0 348 307 20 0 chr3 182099776 182099877 -45424701 - MER94 DNA DNA 0 134 32 659 355 36 0 chr3 182100628 182100876 -45423702 + MIR SINE MIR 3 259 -3 231 292 15 0 chr3 182101062 182101127 -45423451 + L2 LINE L2 3248 3313 0 186 43 0 0 chr3 182101354 182101377 -45423201 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1049 249 73 29 chr3 182101377 182101718 -45422860 - LTR47B LTR ERVL -86 357 2 261 339 28 46 chr3 182101718 182101827 -45422751 + MIR SINE MIR 22 128 -134 570 346 123 27 chr3 182102251 182102838 -45421740 + L2 LINE L2 1988 2630 -684 241 255 88 29 chr3 182103188 182103290 -45421288 - L1MEd LINE L1 -5953 166 59 1103 233 55 43 chr3 182103378 182103867 -45420711 - MER39 LTR ERV1 -5 651 6 1605 164 113 22 chr3 182103871 182104242 -45420336 - LTR37A LTR ERV1 -21 405 1 334 315 54 34 chr3 182104248 182104397 -45420181 + L2 LINE L2 3117 3268 -4 624 276 32 0 chr3 182105497 182105653 -45418925 - MER5B DNA MER1_type -17 161 1 263 302 87 81 chr3 182106120 182106403 -45418175 + L2 LINE L2 2966 3281 -32 21 0 0 0 chr3 182106413 182106434 -45418144 + AT_rich Low_complexity Low_complexity 1 21 0 724 255 27 54 chr3 182106435 182106694 -45417884 - MIR SINE MIR 0 262 11 279 0 0 0 chr3 182106738 182106769 -45417809 + (TG)n Simple_repeat Simple_repeat 2 32 0 2133 184 118 0 chr3 182107131 182107581 -45416997 - MLT1D LTR MaLR 0 505 3 1732 167 47 39 chr3 182108621 182109005 -45415573 + MLT1B LTR MaLR 1 387 -3 336 333 23 23 chr3 182109010 182109184 -45415394 + MLT1I LTR MaLR 195 368 -41 188 328 66 0 chr3 182109209 182109270 -45415308 - MIR SINE MIR -110 152 88 300 318 151 22 chr3 182109555 182109734 -45414844 + MIR SINE MIR 29 230 -32 318 255 170 26 chr3 182110341 182110494 -45414084 + HAL1b LINE L1 61 235 -1113 2633 160 29 97 chr3 182110494 182111214 -45413364 + L1MA9 LINE L1 5593 6263 -49 443 309 77 24 chr3 182111271 182111607 -45412971 + HAL1b LINE L1 292 645 -703 1237 248 93 85 chr3 182111978 182112097 -45412481 + L1MC5 LINE L1 6542 6659 -1302 1763 132 135 0 chr3 182112097 182112415 -45412163 + MER46B DNA MER2_type 1 236 0 1237 248 93 85 chr3 182112415 182113268 -45411310 + L1MC5 LINE L1 6659 7537 -424 2093 238 68 33 chr3 182113283 182114005 -45410573 + L1MD2 LINE L1 5488 6234 -125 2707 243 45 32 chr3 182114033 182114814 -45409764 - MER21B LTR ERV1 -54 809 19 363 250 0 0 chr3 182114836 182114912 -45409666 - MER21B LTR ERV1 -773 90 15 296 282 73 0 chr3 182114930 182115040 -45409538 + L1MD3 LINE L1 7869 7986 -9 240 317 67 8 chr3 182115156 182115276 -45409302 + L1ME3A LINE L1 5988 6114 -56 185 276 35 0 chr3 182116428 182116486 -45408092 + L2 LINE L2 1161 1220 -2094 2574 10 0 42 chr3 182116654 182116962 -45407616 + AluYa5 SINE Alu 1 295 -16 215 193 24 145 chr3 182117610 182117693 -45406885 + L2 LINE L2 3161 3233 -39 536 104 9 28 chr3 182118119 182118225 -45406353 + (TCC)n Simple_repeat Simple_repeat 2 105 0 251 191 0 0 chr3 182118242 182118284 -45406294 - Tigger3(Golem) DNA MER2_type -1249 1780 1739 2477 137 83 13 chr3 182118284 182118744 -45405834 - L1PA16 LINE L1 0 6166 5675 6095 123 10 27 chr3 182119873 182120820 -45403758 - L1P LINE L1 -2365 3781 2839 567 103 0 0 chr3 182120820 182120907 -45403671 - Alu SINE Alu -3 308 222 6095 123 10 27 chr3 182120907 182121217 -45403361 - L1P LINE L1 -3307 2839 2525 445 234 198 6 chr3 182121916 182122083 -45402495 - MIR SINE MIR -3 259 61 289 373 37 0 chr3 182122187 182122321 -45402257 - MIR SINE MIR -55 207 69 478 251 123 47 chr3 182122464 182122675 -45401903 + MIR SINE MIR 29 255 -7 647 157 107 0 chr3 182122894 182123015 -45401563 + AluJo SINE Alu 1 134 -178 528 309 86 51 chr3 182126344 182126777 -45397801 - LTR33 LTR ERVL -57 464 17 1615 178 44 35 chr3 182128046 182128389 -45396189 + MER7A DNA MER2_type 1 344 -2 208 95 24 24 chr3 182128586 182128628 -45395950 + (TCTA)n Simple_repeat Simple_repeat 4 45 0 376 77 0 0 chr3 182129040 182129092 -45395486 + Alu SINE Alu 1 52 -251 1135 121 0 18 chr3 182129100 182129265 -45395313 - AluSx SINE Alu -150 162 1 2184 99 0 3 chr3 182129500 182129813 -45394765 + AluSg SINE Alu 1 312 0 964 314 53 41 chr3 182130096 182130680 -45393898 - L2 LINE L2 -16 3297 2703 338 335 40 7 chr3 182130715 182130909 -45393669 - MLT1J LTR MaLR -79 536 239 2806 202 79 44 chr3 182131012 182132145 -45392433 + L1ME2 LINE L1 4930 6164 0 922 289 110 40 chr3 182132162 182132851 -45391727 - L2 LINE L2 -616 2698 358 398 236 19 47 chr3 182132830 182132936 -45391642 + L2 LINE L2 270 372 -2942 * 512 305 137 15 chr3 182132930 182133192 -45391386 - L2 LINE L2 -2933 381 88 2332 51 0 4 chr3 182133828 182134101 -45390477 - AluY SINE Alu -6 305 34 1444 318 72 66 chr3 182134358 182135341 -45389237 + L3 LINE CR1 441 1433 -144 3660 131 58 31 chr3 182135341 182135458 -45389120 - MER39 LTR ERV1 0 707 595 2229 105 7 0 chr3 182135458 182135762 -45388816 - AluSx SINE Alu -1 311 6 3660 131 58 31 chr3 182135762 182136329 -45388249 - MER39 LTR ERV1 -112 595 4 1444 318 72 66 chr3 182136329 182136438 -45388140 + L3 LINE CR1 1433 1540 -37 312 359 21 7 chr3 182136422 182136564 -45388014 + MIR SINE MIR 49 192 -70 * 197 184 79 66 chr3 182136602 182136678 -45387900 + MIR3 SINE MIR 125 201 -7 634 253 6 22 chr3 182136917 182137095 -45387483 + MER5B DNA MER1_type 1 175 -3 2257 109 3 0 chr3 182137234 182137528 -45387050 - AluSx SINE Alu -17 295 1 216 0 0 0 chr3 182138275 182138299 -45386279 + (CA)n Simple_repeat Simple_repeat 2 25 0 23 33 0 0 chr3 182138787 182138817 -45385761 + AT_rich Low_complexity Low_complexity 1 30 0 1868 136 72 31 chr3 182138824 182139184 -45385394 - THE1C LTR MaLR 0 375 1 402 328 99 20 chr3 182139198 182139399 -45385179 + L2 LINE L2 3054 3270 -2 352 333 58 19 chr3 182140181 182140337 -45384241 + MIR SINE MIR 95 256 -6 285 51 0 0 chr3 182141978 182142017 -45382561 + (CA)n Simple_repeat Simple_repeat 1 39 0 204 218 26 13 chr3 182143036 182143114 -45381464 + CT-rich Low_complexity Low_complexity 3 81 0 288 120 0 0 chr3 182144715 182144765 -45379813 + (GA)n Simple_repeat Simple_repeat 1 50 0 619 259 69 6 chr3 182144874 182145048 -45379530 + MIR SINE MIR 8 192 -70 280 318 103 15 chr3 182145234 182145443 -45379135 - MIR SINE MIR -14 248 20 235 135 0 0 chr3 182145547 182145584 -45378994 - L2 LINE L2 -93 3220 3184 871 301 58 45 chr3 182146326 182146811 -45377767 - MLT1K LTR MaLR -7 581 91 225 303 26 0 chr3 182149129 182149205 -45375373 - MER69 DNA AcHobo -2 2524 2447 * 333 203 178 51 chr3 182149199 182149317 -45375261 - MER69 DNA AcHobo -1079 147 15 1739 114 164 6 chr3 182149761 182150085 -45374493 + THE1C LTR MaLR 1 375 0 425 281 42 28 chr3 182151471 182151688 -45372890 - MER102b DNA MER1_type 0 341 122 1889 112 36 18 chr3 182153020 182153296 -45371282 + AluSx SINE Alu 19 299 -13 253 208 75 0 chr3 182154406 182154459 -45370119 - L2 LINE L2 0 3272 3216 * 490 258 103 6 chr3 182154427 182154583 -45369995 - MIR SINE MIR -19 243 74 336 250 68 68 chr3 182155466 182155598 -45368980 + MIR SINE MIR 125 256 -6 2202 103 0 3 chr3 182156555 182156875 -45367703 + AluSx SINE Alu 1 312 0 2325 108 19 63 chr3 182157793 182158221 -45366357 + L1MA1 LINE L1 5888 6296 -6 492 259 45 0 chr3 182158441 182158553 -45366025 - L2 LINE L2 0 3272 3156 200 247 32 75 chr3 182158854 182158947 -45365631 - MER5C DNA MER1_type -234 90 2 24 53 0 0 chr3 182159733 182159771 -45364807 + AT_rich Low_complexity Low_complexity 1 38 0 219 293 32 68 chr3 182159779 182159875 -45364703 + MER5B DNA MER1_type 23 124 -65 2106 103 3 0 chr3 182159875 182160157 -45364421 - AluSg SINE Alu -6 304 22 219 293 32 68 chr3 182160157 182160220 -45364358 + MER5B DNA MER1_type 124 188 -1 36 23 0 0 chr3 182163208 182163251 -45361327 + AT_rich Low_complexity Low_complexity 1 43 0 270 325 139 26 chr3 182165731 182165882 -45358696 + L3 LINE CR1 343 510 -1067 1969 122 31 0 chr3 182166017 182166303 -45358275 + AluSq SINE Alu 6 300 -13 282 260 48 103 chr3 182166335 182166481 -45358097 + L3 LINE CR1 1426 1563 -14 183 216 0 0 chr3 182166531 182166568 -45358010 - L2 LINE L2 0 3313 3277 1099 243 75 46 chr3 182167144 182167457 -45357121 - MLT1J1 LTR MaLR -18 428 99 2623 107 6 3 chr3 182167457 182167820 -45356758 + THE1B LTR MaLR 1 364 0 1099 243 75 46 chr3 182167820 182167922 -45356656 - MLT1J1 LTR MaLR -347 99 1 398 288 0 9 chr3 182168061 182168172 -45356406 - LTR67 LTR ERVL -20 537 428 186 227 91 0 chr3 182168857 182168901 -45355677 + MIR SINE MIR 106 153 -55 22 56 0 0 chr3 182169794 182169830 -45354748 + AT_rich Low_complexity Low_complexity 1 36 0 380 284 213 28 chr3 182170182 182170618 -45353960 - L1ME4a LINE L1 -56 6065 5549 376 321 124 15 chr3 182171172 182171437 -45353141 - L1ME4a LINE L1 -1341 4805 4512 2377 80 0 10 chr3 182171528 182171827 -45352751 - AluSx SINE Alu -15 297 2 515 58 0 81 chr3 182171881 182171968 -45352610 - AluSp/q SINE Alu -12 301 222 267 309 17 17 chr3 182171998 182172179 -45352399 - L1ME4a LINE L1 -1788 4358 4178 336 360 93 17 chr3 182172262 182172618 -45351960 - L1ME4a LINE L1 -2318 3828 3446 25 65 0 0 chr3 182172723 182172769 -45351809 + AT_rich Low_complexity Low_complexity 1 46 0 2073 130 0 26 chr3 182172862 182173169 -45351409 - AluSx SINE Alu -13 299 1 23 0 0 0 chr3 182173980 182174003 -45350575 + AT_rich Low_complexity Low_complexity 1 23 0 407 317 10 0 chr3 182174150 182174254 -45350324 - L2 LINE L2 0 3272 3168 6018 113 9 2 chr3 182174440 182175631 -45348947 - L1PA15 LINE L1 -8 6157 4964 202 150 25 0 chr3 182175658 182175698 -45348880 + T-rich Low_complexity Low_complexity 2 42 0 29 47 0 0 chr3 182175863 182175906 -45348672 + AT_rich Low_complexity Low_complexity 1 43 0 722 261 60 40 chr3 182175956 182176205 -45348373 - MIR SINE MIR -1 261 8 29 47 0 0 chr3 182176635 182176678 -45347900 + AT_rich Low_complexity Low_complexity 1 43 0 1845 112 41 4 chr3 182176848 182177115 -45347463 + AluSp SINE Alu 21 297 -16 1010 287 139 39 chr3 182177290 182177779 -45346799 + L2 LINE L2 2377 2815 -498 261 0 0 0 chr3 182177779 182177808 -45346770 + (TTTA)n Simple_repeat Simple_repeat 3 31 0 1010 287 139 39 chr3 182177808 182178138 -45346440 + L2 LINE L2 2815 3313 0 912 262 117 69 chr3 182178526 182179950 -45344628 + L1MC5 LINE L1 5786 7255 -737 666 240 84 118 chr3 182180047 182180722 -45343856 + L1MC5 LINE L1 7262 7913 -48 232 301 14 0 chr3 182180980 182181053 -45343525 + MIR SINE MIR 153 226 -36 1937 98 0 47 chr3 182183533 182183807 -45340771 + AluSg SINE Alu 26 286 -24 225 0 0 0 chr3 182183808 182183833 -45340745 + (CAAT)n Simple_repeat Simple_repeat 4 28 0 608 193 30 7 chr3 182184543 182184678 -45339900 - MER114 LTR ERV -456 192 55 4032 143 25 34 chr3 182184687 182184864 -45339714 - L1MA9 LINE L1 -19 6293 6116 2251 97 10 7 chr3 182184864 182185164 -45339414 + AluSq SINE Alu 1 301 -12 4032 143 25 34 chr3 182185164 182185499 -45339079 - L1MA9 LINE L1 -196 6116 5788 369 0 0 0 chr3 182185499 182185540 -45339038 + (TG)n Simple_repeat Simple_repeat 2 42 0 4032 143 25 34 chr3 182185540 182185793 -45338785 - L1MA9 LINE L1 -524 5788 5534 208 306 45 18 chr3 182185835 182185946 -45338632 - MIR SINE MIR -147 115 2 1165 250 25 35 chr3 182186139 182186507 -45338071 + L2 LINE L2 2949 3312 -1 23 54 0 0 chr3 182187167 182187204 -45337374 + AT_rich Low_complexity Low_complexity 1 37 0 1353 163 4 50 chr3 182188486 182188744 -45335834 - AluJo SINE Alu -4 308 63 956 271 29 0 chr3 182189465 182189705 -45334873 - MIR SINE MIR -11 251 5 1953 121 184 11 chr3 182189876 182190241 -45334337 + MSTA LTR MaLR 1 428 0 556 211 9 18 chr3 182191127 182191241 -45333337 - MER81 DNA DNA -1 113 1 478 213 148 16 chr3 182191361 182191483 -45333095 - MIR SINE MIR -94 168 31 288 263 0 0 chr3 182191809 182191866 -45332712 + polypurine Low_complexity Low_complexity 2 58 0 302 150 0 17 chr3 182191872 182191932 -45332646 + (GGGA)n Simple_repeat Simple_repeat 3 61 0 2393 44 0 0 chr3 182192234 182192528 -45332050 - L1PA2 LINE L1 0 6155 5862 307 273 45 38 chr3 182192538 182192670 -45331908 - L1ME4a LINE L1 -202 5919 5787 269 256 49 12 chr3 182192932 182193014 -45331564 - MARNA DNA Mariner -17 569 485 521 273 104 28 chr3 182194034 182194226 -45330352 - MIR SINE MIR -16 246 45 518 155 82 0 chr3 182194570 182194667 -45329911 + MER63 DNA MER1_type 1 731 -105 398 209 88 0 chr3 182194674 182194765 -45329813 + MER63 DNA MER1_type 964 1062 0 307 234 262 0 chr3 182194765 182194906 -45329672 - MIR SINE MIR -2 260 83 203 382 49 0 chr3 182195092 182195215 -45329363 + L2 LINE L2 3182 3310 -3 321 260 35 70 chr3 182195301 182195528 -45329050 + L1ME LINE L1 5605 5823 -298 530 322 111 0 chr3 182195600 182195799 -45328779 + MIR SINE MIR 12 232 -30 3152 194 10 18 chr3 182195905 182196616 -45327962 - L1PA16 LINE L1 -957 5189 4485 * 5323 125 61 5 chr3 182196613 182197528 -45327050 + L1PA16 LINE L1 5202 6166 0 21 0 0 0 chr3 182197666 182197687 -45326891 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 182199891 182199921 -45324657 + AT_rich Low_complexity Low_complexity 1 30 0 489 195 142 0 chr3 182200239 182200352 -45324226 + MER94 DNA DNA 1 129 -5 899 303 73 24 chr3 182200570 182200992 -45323586 - MLT1J2 LTR MaLR -1 449 7 2764 207 17 3 chr3 182201891 182202466 -45322112 - L1MD3 LINE L1 -9 7986 7404 1036 288 67 22 chr3 182202763 182203214 -45321364 + MLT1L LTR MaLR 143 613 -2 1215 248 36 28 chr3 182203240 182203554 -45321024 - L1ME4a LINE L1 -376 5794 5475 1887 73 22 112 chr3 182203554 182203868 -45320710 - AluYb8 SINE Alu 0 318 33 1215 248 36 28 chr3 182203868 182203912 -45320666 - L1ME4a LINE L1 -695 5475 5433 21 36 0 0 chr3 182203919 182203947 -45320631 + AT_rich Low_complexity Low_complexity 1 28 0 3054 91 23 14 chr3 182204519 182204957 -45319621 - MLT2A1 LTR ERVL -2 442 1 20078 65 6 1 chr3 182204957 182207450 -45317128 - HERVL-A1 LTR ERVL 0 5654 3148 717 36 0 0 chr3 182207530 182207613 -45316965 - HERVL-A1 LTR ERVL -2510 3144 3062 637 181 9 9 chr3 182208321 182208437 -45316141 + MLT1A1 LTR MaLR 1 116 -249 1348 159 9 4 chr3 182208631 182208864 -45315714 + MLT1A1 LTR MaLR 132 365 0 226 362 158 0 chr3 182209155 182209332 -45315246 + MIR SINE MIR 53 257 -5 2100 139 0 0 chr3 182209333 182209635 -45314943 - AluSx SINE Alu -8 304 3 370 125 0 115 chr3 182209924 182210020 -45314558 - L1PA11 LINE L1 0 6174 6090 202 383 28 19 chr3 182210573 182210680 -45313898 - L2 LINE L2 -23 3290 3183 539 279 67 87 chr3 182211764 182212023 -45312555 - L1MC4a LINE L1 -1892 5916 5653 2739 175 41 9 chr3 182212023 182212565 -45312013 - MER89 LTR ERV1 0 559 1 539 279 67 87 chr3 182212565 182212904 -45311674 - L1MC4a LINE L1 -2155 5653 5330 822 274 37 22 chr3 182214331 182214572 -45310006 - MIR SINE MIR -1 261 15 265 272 102 61 chr3 182215016 182215163 -45309415 - MIR SINE MIR -58 204 52 208 328 184 5 chr3 182215555 182215756 -45308822 + MIR SINE MIR 20 256 -6 781 204 55 45 chr3 182216445 182216646 -45307932 - MER3 DNA MER1_type 0 209 7 580 270 51 43 chr3 182217182 182217405 -45307173 + MIR SINE MIR 31 254 -8 181 197 28 0 chr3 182217544 182217615 -45306963 + (CA)n Simple_repeat Simple_repeat 2 74 0 228 333 22 22 chr3 182219260 182219395 -45305183 + L2 LINE L2 2165 2299 -1015 898 238 146 56 chr3 182219400 182219846 -45304732 - LTR16C LTR ERVL 0 491 6 252 341 123 14 chr3 182220010 182220221 -45304357 + L2 LINE L2 2508 2741 -573 432 305 143 19 chr3 182220363 182220622 -45303956 + L2 LINE L2 3019 3309 -4 * 532 343 69 0 chr3 182220621 182220796 -45303782 - MIR SINE MIR -56 206 20 311 274 0 0 chr3 182221691 182221775 -45302803 + MIR SINE MIR 179 262 0 240 86 0 0 chr3 182221868 182221903 -45302675 + (CA)n Simple_repeat Simple_repeat 1 35 0 1676 244 141 35 chr3 182222805 182223258 -45301320 - L1ME1 LINE L1 -18 6148 5608 1827 138 4 7 chr3 182223258 182223534 -45301044 - AluSx SINE Alu 0 312 38 1676 244 141 35 chr3 182223534 182223712 -45300866 - L1ME1 LINE L1 -558 5608 5450 7426 35 4 2 chr3 182223719 182225397 -45299181 - L1PA4 LINE L1 -2 6153 4471 5054 39 5 0 chr3 182225397 182226019 -45298559 + L1PA4 LINE L1 3817 4441 -1705 1180 281 122 7 chr3 182226422 182227081 -45297497 - L2 LINE L2 -7 3306 2565 282 234 29 97 chr3 182227546 182227721 -45296857 + Charlie4 DNA MER1_type 581 743 -1218 518 330 49 15 chr3 182228047 182228311 -45296267 + Charlie2 DNA MER1_type 36 308 -2474 1533 217 114 15 chr3 182228358 182228970 -45295608 + Charlie2 DNA MER1_type 1866 2538 -324 561 291 44 19 chr3 182228972 182229243 -45295335 - L1MCc LINE L1 -4908 1515 1238 21 36 0 0 chr3 182230073 182230101 -45294477 + AT_rich Low_complexity Low_complexity 1 28 0 884 231 16 16 chr3 182230157 182230408 -45294170 + Charlie2 DNA MER1_type 2594 2844 -18 627 299 77 5 chr3 182231405 182231612 -45292966 - MIR SINE MIR -26 236 15 2100 101 42 0 chr3 182232422 182232710 -45291868 + AluSp SINE Alu 1 300 -13 244 91 0 0 chr3 182232719 182232752 -45291826 + L1MC3 LINE L1 6720 6752 -1033 3075 175 12 3 chr3 182232766 182233333 -45291245 + L1MC3 LINE L1 7214 7785 0 2094 82 67 0 chr3 182233338 182233620 -45290958 + AluSg1 SINE Alu 1 301 -8 291 71 0 0 chr3 182233918 182233960 -45290618 + (TC)n Simple_repeat Simple_repeat 1 42 0 2032 138 20 0 chr3 182234283 182234587 -45289991 + AluSx SINE Alu 1 310 -2 23 33 0 0 chr3 182234640 182234670 -45289908 + AT_rich Low_complexity Low_complexity 1 30 0 265 287 109 0 chr3 182235759 182235860 -45288718 + MIR SINE MIR 82 193 -69 298 364 101 0 chr3 182237750 182237948 -45286630 + MIR SINE MIR 34 251 -11 331 320 84 39 chr3 182238049 182238227 -45286351 + MIR3 SINE MIR 9 194 -14 21 0 0 0 chr3 182238941 182238962 -45285616 + AT_rich Low_complexity Low_complexity 1 21 0 831 246 9 9 chr3 182239008 182239240 -45285338 - L1MA9 LINE L1 -38 6274 6043 33 0 0 0 chr3 182239360 182239393 -45285185 + AT_rich Low_complexity Low_complexity 1 33 0 296 234 0 0 chr3 182239642 182239710 -45284868 - MIR SINE MIR -67 141 87 43 35 0 0 chr3 182239912 182239969 -45284609 + AT_rich Low_complexity Low_complexity 1 57 0 349 193 121 50 chr3 182240126 182240266 -45284312 - MIR3 SINE MIR -9 199 50 256 367 16 8 chr3 182240586 182240714 -45283864 + L2 LINE L2 2843 2971 -342 1481 205 89 21 chr3 182240740 182241121 -45283457 - L1MD2 LINE L1 -13 6346 5940 425 169 54 46 chr3 182241220 182241350 -45283228 - MER113 DNA MER1_type? -387 134 4 1253 27 0 0 chr3 182241546 182241694 -45282884 + L1PA4 LINE L1 6005 6152 -3 200 194 0 0 chr3 182243553 182243589 -45280989 + (CA)n Simple_repeat Simple_repeat 2 37 0 1265 27 0 0 chr3 182244324 182244470 -45280108 - L1P1 LINE L1 -474 5681 5536 1092 8 0 0 chr3 182244470 182244591 -45279987 + L1PA2 LINE L1 6030 6153 -2 236 291 47 55 chr3 182246099 182246226 -45278352 - L2 LINE L2 0 3313 3188 226 279 117 54 chr3 182246714 182246825 -45277753 - L2 LINE L2 -295 2977 2860 2357 86 3 3 chr3 182247292 182247596 -45276982 - AluSc SINE Alu -4 305 2 313 337 45 40 chr3 182247732 182247934 -45276644 + MIR SINE MIR 50 252 -10 989 240 27 37 chr3 182248610 182248926 -45275652 - L1ME1 LINE L1 -3 6163 5880 2577 265 110 31 chr3 182249370 182250653 -45273925 - L2 LINE L2 -24 3289 1915 266 214 0 18 chr3 182252860 182252916 -45271662 + L2 LINE L2 3255 3309 -4 395 171 40 0 chr3 182253871 182253947 -45270631 + L2 LINE L2 3195 3273 -40 2374 167 9 32 chr3 182254333 182254769 -45269809 - MSTB LTR MaLR 0 426 1 436 285 55 24 chr3 182254771 182254936 -45269642 + MIR SINE MIR 3 172 -90 1928 79 4 23 chr3 182255520 182255785 -45268793 + AluSp SINE Alu 39 298 -15 29 0 0 0 chr3 182257626 182257655 -45266923 + AT_rich Low_complexity Low_complexity 1 29 0 269 358 8 45 chr3 182258314 182258448 -45266130 + MIR3 SINE MIR 10 138 -70 962 255 186 41 chr3 182258463 182258846 -45265732 + L2 LINE L2 2691 3176 -137 2251 215 47 52 chr3 182258846 182259403 -45265175 + MLT2B3 LTR ERVL 1 554 0 962 255 186 41 chr3 182259403 182259565 -45265013 + L2 LINE L2 3176 3313 0 228 395 34 8 chr3 182259573 182259692 -45264886 - L2 LINE L2 -17 3255 3134 1763 163 48 9 chr3 182259976 182260307 -45264271 + MER2 DNA MER2_type 1 344 0 241 177 143 19 chr3 182260767 182260976 -45263602 + Zaphod DNA AcHobo 754 988 -3043 1164 223 19 72 chr3 182260977 182261336 -45263242 + MER58B DNA MER1_type 2 341 0 22 35 0 0 chr3 182261399 182261428 -45263150 + AT_rich Low_complexity Low_complexity 1 29 0 3099 169 46 36 chr3 182261692 182262407 -45262171 - L1MA7 LINE L1 -28 6263 5542 559 198 31 52 chr3 182262462 182262654 -45261924 + Zaphod DNA AcHobo 3836 4023 -8 184 293 67 13 chr3 182263051 182263126 -45261452 + MIR SINE MIR 63 141 -121 * 417 351 64 64 chr3 182263111 182263190 -45261388 - L2 LINE L2 -4 3268 3190 1288 202 6 28 chr3 182263190 182263517 -45261061 + MER33 DNA MER1_type 5 324 0 417 351 64 64 chr3 182263517 182263810 -45260768 - L2 LINE L2 -81 3191 2896 2096 66 41 7 chr3 182263830 182264132 -45260446 + AluSc SINE Alu 1 311 0 2277 113 0 3 chr3 182267584 182267894 -45256684 - AluSx SINE Alu -3 309 1 598 299 98 29 chr3 182268995 182269239 -45255339 - MIR SINE MIR 0 262 2 759 198 35 91 chr3 182269792 182269968 -45254610 + L2 LINE L2 2436 2597 -717 1892 153 33 10 chr3 182269968 182270269 -45254309 - AluSx SINE Alu -4 308 1 759 198 35 91 chr3 182270269 182270324 -45254254 + L2 LINE L2 2597 2654 -660 366 272 7 52 chr3 182270326 182270462 -45254116 - MLT1I LTR MaLR -188 221 92 7580 29 0 0 chr3 182270482 182271607 -45252971 - L1PA3 LINE L1 -3 6152 5027 16898 58 9 3 chr3 182271732 182274568 -45250010 - L1PA8 LINE L1 -113 6059 3198 1849 167 13 19 chr3 182274780 182275091 -45249487 + AluSx SINE Alu 3 311 -1 4531 56 14 0 chr3 182275211 182275779 -45248799 - L1PA7 LINE L1 -5 6149 5574 2690 79 5 33 chr3 182275779 182276207 -45248371 + L1P LINE L1 4387 4802 -1344 496 248 24 114 chr3 182277088 182277334 -45247244 - MER58A DNA MER1_type 0 224 1 480 310 70 28 chr3 182277748 182278435 -45246143 + L1ME LINE L1 4301 5016 -1130 207 179 0 0 chr3 182278554 182278593 -45245985 + (TG)n Simple_repeat Simple_repeat 1 39 0 25 0 0 0 chr3 182278786 182278811 -45245767 + AT_rich Low_complexity Low_complexity 1 25 0 398 313 71 8 chr3 182278890 182279130 -45245448 + L1ME LINE L1 5485 5739 -382 444 196 20 166 chr3 182279324 182279727 -45244851 + LTR37A LTR ERV1 74 417 -9 32 26 0 0 chr3 182280125 182280164 -45244414 + AT_rich Low_complexity Low_complexity 1 39 0 444 351 28 18 chr3 182281249 182281449 -45243129 - MIR3 SINE MIR -1 207 1 34955 41 1 3 chr3 182281814 182287856 -45236722 - L1PA3 LINE L1 0 6155 1 743 315 72 50 chr3 182287903 182288418 -45236160 - L2 LINE L2 -508 2806 2281 1456 254 22 64 chr3 182288496 182288999 -45235579 + L2 LINE L2 2821 3302 -11 297 303 49 81 chr3 182289137 182289198 -45235380 - MER5A DNA MER1_type -1 188 127 1702 175 0 4 chr3 182289198 182289461 -45235117 - AluJo SINE Alu -30 282 21 297 303 49 81 chr3 182289461 182289584 -45234994 - MER5A DNA MER1_type -62 127 10 249 263 277 0 chr3 182289916 182290053 -45234525 - MIR SINE MIR -17 245 71 541 273 13 47 chr3 182290368 182290575 -45234003 + MIR SINE MIR 52 250 -12 434 356 28 6 chr3 182290965 182291145 -45233433 - MIR SINE MIR -59 203 20 1719 28 5 0 chr3 182291194 182291410 -45233168 - L1PA4 LINE L1 -1030 5116 4900 7450 38 0 0 chr3 182291410 182292440 -45232138 + L1PA4 LINE L1 5110 6147 -8 21134 157 19 9 chr3 182292768 182295099 -45229479 + L1MA3 LINE L1 64 2370 -5354 2178 115 6 19 chr3 182295099 182295413 -45229165 + AluSg SINE Alu 1 310 0 21134 157 19 9 chr3 182295413 182297540 -45227038 + L1MA3 LINE L1 2370 4474 -3250 2163 76 0 0 chr3 182297540 182297824 -45226754 + AluY SINE Alu 21 304 0 21134 157 19 9 chr3 182297824 182300941 -45223637 + L1MA3 LINE L1 4474 7724 0 724 294 69 9 chr3 182301511 182301742 -45222836 - MIR SINE MIR -10 252 8 341 252 93 0 chr3 182301819 182301926 -45222652 + MER94 DNA DNA 18 134 0 2257 147 25 5 chr3 182302395 182302763 -45221815 - THE1C LTR MaLR 0 375 1 431 182 50 20 chr3 182302983 182303082 -45221496 - L2 LINE L2 -5 3308 3207 332 343 0 0 chr3 182303160 182303265 -45221313 + MIR3 SINE MIR 98 202 -6 234 280 75 9 chr3 182303807 182303914 -45220664 - MIR SINE MIR -57 205 92 1639 188 27 12 chr3 182304179 182304508 -45220070 - MER1B DNA MER1_type 0 339 6 8460 33 0 5 chr3 182305115 182306197 -45218381 - L1P LINE L1 -1872 4274 3198 1849 167 13 19 chr3 182306409 182306720 -45217858 + AluSx SINE Alu 3 311 -1 4531 56 14 0 chr3 182306840 182307408 -45217170 - L1PA7 LINE L1 -5 6149 5574 * 8250 32 1 0 chr3 182307406 182309194 -45215384 + L1PA3 LINE L1 4385 6159 0 183 129 0 0 chr3 182309358 182309389 -45215189 + (CA)n Simple_repeat Simple_repeat 2 32 0 22 35 0 0 chr3 182309785 182309814 -45214764 + AT_rich Low_complexity Low_complexity 1 29 0 283 188 116 0 chr3 182309815 182309884 -45214694 + MIR SINE MIR 186 262 0 836 304 137 25 chr3 182310071 182310543 -45214035 + L2 LINE L2 2791 3311 -2 445 294 134 29 chr3 182311670 182311976 -45212602 + MLT1H LTR MaLR 15 352 -197 633 298 17 60 chr3 182312148 182312450 -45212128 - L1MC4a LINE L1 -1942 5866 5578 194 319 35 78 chr3 182312897 182313038 -45211540 + MIR SINE MIR 14 148 -114 391 323 57 6 chr3 182313216 182313374 -45211204 + MIR SINE MIR 81 246 -16 895 234 47 69 chr3 182313468 182313554 -45211024 + HsTC2a DNA Tc2 3 89 -1635 2205 122 0 0 chr3 182313554 182313849 -45210729 + AluSq SINE Alu 1 295 -18 895 234 47 69 chr3 182313849 182314036 -45210542 + HsTC2a DNA Tc2 89 270 -474 465 263 0 133 chr3 182315077 182315355 -45209223 + L2 LINE L2 3030 3270 -43 199 176 0 0 chr3 182315366 182315400 -45209178 + L3 LINE CR1 1250 1283 -294 1732 235 58 22 chr3 182316511 182317008 -45207570 - L1ME3A LINE L1 -36 6134 5620 44419 39 6 4 chr3 182317094 182323236 -45201342 + L1PA3 LINE L1 1 6155 0 198 91 0 0 chr3 182325151 182325184 -45199394 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1569 123 0 0 chr3 182325636 182325847 -45198731 + AluSc SINE Alu 85 295 -14 1926 229 87 25 chr3 182325994 182326310 -45198268 - MLT1F1 LTR MaLR -19 548 253 486 0 0 0 chr3 182326310 182326364 -45198214 + (TG)n Simple_repeat Simple_repeat 1 54 0 321 26 0 0 chr3 182326363 182326401 -45198177 + (GA)n Simple_repeat Simple_repeat 1 38 0 * 1926 229 87 25 chr3 182326364 182326599 -45197979 - MLT1F1 LTR MaLR -314 253 2 852 236 45 32 chr3 182327581 182327827 -45196751 + MIR SINE MIR 11 259 -3 330 329 72 13 chr3 182327996 182328148 -45196430 + L2 LINE L2 3102 3262 -10 425 293 17 0 chr3 182328170 182328286 -45196292 - L2 LINE L2 -10 3303 3186 316 296 110 76 chr3 182328369 182328778 -45195800 - MLT1L LTR MaLR -2 613 87 219 271 17 17 chr3 182328930 182328989 -45195589 + MIR3 SINE MIR 127 185 -23 271 315 148 0 chr3 182329125 182329274 -45195304 + MIR SINE MIR 35 205 -57 462 312 112 15 chr3 182330289 182330494 -45194084 + MIR SINE MIR 23 247 -15 275 371 77 53 chr3 182331226 182331603 -45192975 + L2 LINE L2 2870 3255 -17 870 215 101 9 chr3 182331881 182332100 -45192478 + MIR SINE MIR 3 241 -21 6735 109 7 21 chr3 182332515 182333227 -45191351 - L1PA11 LINE L1 -21 6153 5432 2286 129 16 49 chr3 182333227 182333615 -45190963 - THE1C LTR MaLR 0 375 1 6735 109 7 21 chr3 182333615 182334389 -45190189 - L1PA11 LINE L1 -742 5432 4697 400 273 175 7 chr3 182335171 182335325 -45189253 - MIR SINE MIR -6 256 77 209 221 59 88 chr3 182335370 182335438 -45189140 - MIR SINE MIR -187 75 10 613 194 0 0 chr3 182335702 182335834 -45188744 - FLAM_A SINE Alu 0 151 20 184 372 0 13 chr3 182335907 182335985 -45188593 - L2 LINE L2 -400 2914 2838 250 252 63 27 chr3 182336011 182336122 -45188456 - LTR67 LTR ERVL 0 557 443 2368 87 0 0 chr3 182337376 182337664 -45186914 - AluSc SINE Alu -21 288 1 620 238 82 19 chr3 182337867 182338073 -45186505 - LTR16C LTR ERVL -1 490 272 7973 28 2 0 chr3 182338790 182339900 -45184678 + L1PA3 LINE L1 5048 6159 0 183 129 0 0 chr3 182340064 182340095 -45184483 + (CA)n Simple_repeat Simple_repeat 2 32 0 275 234 70 41 chr3 182340237 182340461 -45184117 + (CAGTA)n Simple_repeat Simple_repeat 1 230 0 276 242 76 0 chr3 182342153 182342219 -45182359 - L2 LINE L2 -1 3312 3242 445 274 107 32 chr3 182342666 182342918 -45181660 + L2 LINE L2 3043 3313 0 21 36 0 0 chr3 182343139 182343167 -45181411 + AT_rich Low_complexity Low_complexity 1 28 0 242 264 149 0 chr3 182343169 182343256 -45181322 - MIR SINE MIR -112 150 51 852 304 39 54 chr3 182343422 182343882 -45180696 - L2 LINE L2 -547 2767 2315 11846 24 0 1 chr3 182343991 182345400 -45179178 + L1P1 LINE L1 4034 5440 -715 2511 180 47 2 chr3 182345514 182346003 -45178575 - L1P LINE L1 -5624 522 12 1785 174 7 7 chr3 182346206 182346504 -45178074 - AluJb SINE Alu -14 298 1 904 190 17 0 chr3 182346848 182347027 -45177551 + L1MA5 LINE L1 6115 6296 -4 683 277 85 11 chr3 182347224 182347484 -45177094 + L1ME3A LINE L1 5856 6134 -36 199 176 0 0 chr3 182348597 182348631 -45175947 - L3 LINE CR1 -294 1283 1250 468 263 0 133 chr3 182348642 182348920 -45175658 - L2 LINE L2 -43 3270 3030 3973 91 0 4 chr3 182349819 182350355 -45174223 - L1P LINE L1 -5608 538 5 190 333 58 11 chr3 182350867 182350954 -45173624 + L2 LINE L2 3223 3313 0 1031 176 29 25 chr3 182351134 182351372 -45173206 + L1MA4A LINE L1 6050 6288 -15 200 205 0 0 chr3 182351558 182351597 -45172981 + (CATATA)n Simple_repeat Simple_repeat 3 41 0 1113 155 5 0 chr3 182351708 182351902 -45172676 - AluY SINE Alu -116 195 1 5354 92 0 4 chr3 182352928 182353624 -45170954 - L1PA8 LINE L1 0 6172 5480 259 268 175 9 chr3 182354009 182354121 -45170457 + MIR SINE MIR 48 180 -65 248 294 73 47 chr3 182354285 182354493 -45170085 + MIR SINE MIR 45 258 -4 2402 231 58 17 chr3 182354982 182355689 -45168889 - L1 LINE L1 -1267 4879 4144 247 208 192 8 chr3 182355805 182355935 -45168643 + L1ME4a LINE L1 5967 6120 -1 185 149 106 0 chr3 182356327 182356374 -45168204 - MIR3 SINE MIR -49 159 108 413 368 18 18 chr3 182356458 182356681 -45167897 - MIR SINE MIR -12 250 28 1999 99 102 16 chr3 182357422 182357793 -45166785 - LTR7 LTR ERV1 0 450 1 688 217 14 7 chr3 182357793 182357931 -45166647 + MER5A DNA MER1_type 48 186 -3 843 163 81 0 chr3 182358049 182358221 -45166357 - MER53 DNA DNA -2 187 2 284 226 0 0 chr3 182358545 182358598 -45165980 - FRAM/FAM SINE Alu -104 71 19 184 372 0 13 chr3 182358670 182358748 -45165830 - L2 LINE L2 -400 2913 2837 250 252 63 27 chr3 182358774 182358885 -45165693 - LTR67 LTR ERVL 0 557 443 2368 87 0 0 chr3 182360139 182360427 -45164151 - AluSc SINE Alu -21 288 1 491 274 83 20 chr3 182360632 182360836 -45163742 - LTR16C LTR ERVL -3 488 272 4510 97 2 2 chr3 182361555 182362487 -45162091 + L1PA3 LINE L1 5048 5979 -176 1173 238 43 31 chr3 182362731 182363054 -45161524 - MER1B DNA MER1_type -7 332 6 417 243 56 112 chr3 182363205 182363342 -45161236 + MIR SINE MIR 26 144 -118 2886 111 18 7 chr3 182363342 182363792 -45160786 - L1PA14 LINE L1 -1 6160 5706 417 243 56 112 chr3 182363792 182363905 -45160673 + MIR SINE MIR 144 262 0 872 304 137 25 chr3 182364092 182364564 -45160014 + L2 LINE L2 2791 3311 -2 436 291 134 29 chr3 182365690 182365996 -45158582 + MLT1H LTR MaLR 15 352 -197 535 302 16 72 chr3 182366168 182366489 -45158089 - L1MC4a LINE L1 -1942 5866 5564 205 298 12 60 chr3 182366977 182367061 -45157517 + MIR SINE MIR 69 148 -114 239 317 69 21 chr3 182367240 182367385 -45157193 + MIR SINE MIR 81 232 -30 245 267 0 35 chr3 182367493 182367579 -45156999 + HsTC2 DNA Tc2 3 85 -1813 716 212 0 0 chr3 182367579 182367730 -45156848 + AluSq/x SINE Alu 1 151 -161 371 323 57 6 chr3 182368374 182368532 -45156046 + MIR SINE MIR 81 246 -16 871 228 48 71 chr3 182368626 182368712 -45155866 + HsTC2a DNA Tc2 3 89 -1635 2192 122 0 0 chr3 182368712 182369007 -45155571 + AluSq SINE Alu 1 295 -18 871 228 48 71 chr3 182369007 182369188 -45155390 + HsTC2a DNA Tc2 89 264 -480 361 248 75 30 chr3 182370045 182370178 -45154400 + MIR SINE MIR 53 191 -71 286 246 29 0 chr3 182370501 182370570 -45154008 - MER117 DNA MER1_type -53 144 74 260 252 95 61 chr3 182370956 182371103 -45153475 + MIR SINE MIR 77 228 -34 2117 108 4 0 chr3 182371132 182371410 -45153168 + AluSc SINE Alu 17 295 -14 351 228 18 9 chr3 182372795 182372909 -45151669 + GA-rich Low_complexity Low_complexity 3 117 0 2514 63 3 0 chr3 182373729 182374031 -45150547 - AluY SINE Alu -8 303 1 5406 69 0 1 chr3 182375056 182375750 -45148828 - L1PA8 LINE L1 0 6172 5480 250 268 175 9 chr3 182376135 182376247 -45148331 + MIR SINE MIR 48 180 -65 282 283 46 106 chr3 182376382 182376619 -45147959 + MIR SINE MIR 36 258 -4 739 250 0 11 chr3 182377041 182377221 -45147357 - MER5B DNA MER1_type 0 178 1 247 323 0 0 chr3 182377697 182377762 -45146816 - MIR SINE MIR -103 105 41 1706 176 66 0 chr3 182380579 182380897 -45143681 - MER44D DNA MER2_type 0 609 1 292 250 69 0 chr3 182382327 182382399 -45142179 - L2 LINE L2 -1 3312 3236 2105 132 26 11 chr3 182382615 182382963 -45141615 + MLT1B LTR MaLR 37 389 -1 236 343 140 0 chr3 182383134 182383277 -45141301 - MLT1K LTR MaLR -365 223 61 269 364 49 33 chr3 182383314 182383498 -45141080 - L2 LINE L2 -184 3088 2902 352 263 11 32 chr3 182383499 182383594 -45140984 - MER81 DNA DNA 0 114 22 379 272 33 0 chr3 182383596 182383688 -45140890 - MER81 DNA DNA -19 95 1 876 81 0 0 chr3 182384499 182384610 -45139968 - AluSg/x SINE Alu -11 301 191 240 243 28 76 chr3 182384784 182384852 -45139726 - L1ME4a LINE L1 -21 6100 6041 2192 135 3 0 chr3 182384852 182385163 -45139415 + AluSx SINE Alu 1 312 0 240 243 28 76 chr3 182385163 182385238 -45139340 - L1ME4a LINE L1 -80 6041 5964 469 322 31 18 chr3 182385378 182385605 -45138973 + L2 LINE L2 2555 2784 -530 353 303 18 55 chr3 182385696 182385914 -45138664 + L1MC/D LINE L1 5610 5819 -1989 211 150 25 62 chr3 182386031 182386111 -45138467 + (TA)n Simple_repeat Simple_repeat 2 78 0 393 296 35 0 chr3 182386401 182386516 -45138062 - MIR SINE MIR -139 123 5 685 281 31 28 chr3 182386744 182387032 -45137546 - L1MC4a LINE L1 -1906 5902 5614 381 86 0 0 chr3 182388230 182388288 -45136290 + (TG)n Simple_repeat Simple_repeat 1 58 0 183 80 0 0 chr3 182388294 182388319 -45136259 + (GA)n Simple_repeat Simple_repeat 2 26 0 195 204 19 56 chr3 182389113 182389167 -45135411 + MIR SINE MIR 1 52 -210 416 164 0 0 chr3 182389190 182389263 -45135315 + AluJ/FRAM SINE Alu 232 304 -8 344 320 166 0 chr3 182389283 182389464 -45135114 + MIR SINE MIR 49 259 -3 392 277 32 77 chr3 182390130 182390350 -45134228 - L1ME4a LINE L1 -297 5824 5615 221 250 77 0 chr3 182391455 182391507 -45133071 - MIR3 SINE MIR -48 160 105 210 136 45 0 chr3 182391522 182391566 -45133012 + A-rich Low_complexity Low_complexity 1 46 0 340 0 83 0 chr3 182391643 182391703 -45132875 + (TA)n Simple_repeat Simple_repeat 1 65 0 2154 112 0 0 chr3 182391703 182391990 -45132588 - AluY SINE Alu -24 287 1 213 277 139 20 chr3 182392327 182392428 -45132150 + MIR SINE MIR 85 197 -65 432 305 75 16 chr3 182392801 182393185 -45131393 + L1M4 LINE L1 3712 4118 -2028 1230 231 110 33 chr3 182393656 182394046 -45130532 + L1ME1 LINE L1 5745 6164 -2 22 35 0 0 chr3 182394445 182394474 -45130104 + AT_rich Low_complexity Low_complexity 1 29 0 230 292 46 15 chr3 182395028 182395158 -45129420 + L1ME4a LINE L1 5794 5927 -194 412 248 69 19 chr3 182395226 182395385 -45129193 - MIR SINE MIR -24 238 69 285 128 0 0 chr3 182396600 182396647 -45127931 + (A)n Simple_repeat Simple_repeat 1 47 0 313 213 26 21 chr3 182397539 182397640 -45126938 - Charlie8 DNA MER1_type -1 2416 234 3843 163 38 7 chr3 182397808 182398524 -45126054 + L1MB7 LINE L1 5431 6168 -16 5989 167 42 9 chr3 182399600 182400846 -45123732 - L1MA7 LINE L1 0 6291 4951 2351 103 7 0 chr3 182400846 182401148 -45123430 - AluSx SINE Alu -8 304 1 5989 167 42 9 chr3 182401148 182401984 -45122594 - L1MA7 LINE L1 -1340 4951 4144 237 165 211 18 chr3 182402121 182402230 -45122348 + L1ME4a LINE L1 5991 6120 -1 186 149 106 0 chr3 182402622 182402669 -45121909 - MIR3 SINE MIR -49 159 108 410 368 18 18 chr3 182402753 182402976 -45121602 - MIR SINE MIR -12 250 28 1958 99 102 16 chr3 182403717 182404088 -45120490 - LTR7 LTR ERV1 0 450 1 686 217 14 7 chr3 182404088 182404226 -45120352 + MER5A DNA MER1_type 48 186 -3 772 163 81 0 chr3 182404344 182404516 -45120062 - MER53 DNA DNA -2 187 2 189 311 54 14 chr3 182404991 182405065 -45119513 - MIR SINE MIR -6 256 180 275 269 0 0 chr3 182406668 182406735 -45117843 + (TATG)n Simple_repeat Simple_repeat 2 68 0 342 192 62 116 chr3 182408144 182408290 -45116288 + MIR SINE MIR 22 159 -103 464 302 222 0 chr3 182408533 182408722 -45115856 + MIR SINE MIR 20 250 -12 2477 150 54 13 chr3 182408956 182409422 -45115156 - L1MA9 LINE L1 -36 6276 5792 405 283 44 13 chr3 182409767 182409926 -45114652 - MLT1J LTR MaLR -341 170 7 235 336 93 0 chr3 182410903 182411010 -45113568 + L2 LINE L2 3147 3263 -9 2494 104 48 2 chr3 182411010 182411405 -45113173 + L1MA3 LINE L1 5887 6299 -6 404 343 77 56 chr3 182412403 182412922 -45111656 + L1MC4a LINE L1 5518 6047 -1761 1052 170 29 4 chr3 182413018 182413259 -45111319 - L1MA4A LINE L1 0 6303 6057 197 333 58 11 chr3 182413449 182413536 -45111042 - L2 LINE L2 0 3313 3223 41761 43 3 1 chr3 182414048 182420187 -45104391 + L1PA4 LINE L1 5 6155 0 432 255 130 42 chr3 182420307 182420499 -45104079 - MIR SINE MIR -1 261 53 188 243 14 0 chr3 182420578 182420652 -45103926 + GA-rich Low_complexity Low_complexity 4 78 0 191 291 51 13 chr3 182420675 182420754 -45103824 - MIR SINE MIR -122 140 59 331 286 103 0 chr3 182421596 182421722 -45102856 + L1ME LINE L1 5653 5791 -330 824 275 56 30 chr3 182421923 182422319 -45102259 - HsTC2 DNA Tc2 -1011 887 482 284 188 0 0 chr3 182422312 182422376 -45102202 - HsTC2 DNA Tc2 -1599 299 236 * 354 173 0 17 chr3 182422510 182422601 -45101977 + MER5A DNA MER1_type 37 189 0 414 314 57 13 chr3 182422634 182422793 -45101785 - MIR SINE MIR 0 262 97 377 307 37 49 chr3 182422884 182423047 -45101531 - MIR3 SINE MIR -46 162 2 2369 83 3 10 chr3 182423357 182423669 -45100909 + AluY SINE Alu 1 310 -1 260 268 191 22 chr3 182424727 182424902 -45099676 - MIR SINE MIR -44 218 20 1796 42 0 30 chr3 182425414 182425650 -45098928 - L1PA4 LINE L1 -3 6152 5924 197 384 158 0 chr3 182426744 182426890 -45097688 - L2 LINE L2 -8 3264 3096 678 321 60 62 chr3 182427639 182428075 -45096503 - L2 LINE L2 0 3272 2838 217 221 191 0 chr3 182428096 182428164 -45096414 + L2 LINE L2 3233 3313 0 458 256 33 11 chr3 182428195 182428375 -45096203 + L1ME3A LINE L1 4561 4744 -1402 40636 55 3 0 chr3 182428404 182434532 -45090046 - L1PA5 LINE L1 -6 6148 11 641 290 109 14 chr3 182434560 182435057 -45089521 + L1ME3A LINE L1 4765 5308 -838 214 208 0 38 chr3 182435067 182435120 -45089458 + GA-rich Low_complexity Low_complexity 1 51 0 337 192 72 10 chr3 182435120 182435253 -45089325 + L1ME3A LINE L1 5321 5474 -686 266 198 79 87 chr3 182435258 182435384 -45089194 + L1ME3A LINE L1 5534 5658 -526 309 279 0 62 chr3 182435433 182435490 -45089088 + L1ME3A LINE L1 5760 5819 -351 2731 100 40 5 chr3 182435490 182435910 -45088668 - L1MA1 LINE L1 0 6302 5868 309 279 0 62 chr3 182435910 182435981 -45088597 + L1MA1 LINE L1 5819 5880 -290 204 302 153 29 chr3 182436405 182436541 -45088037 - MIR SINE MIR -64 144 2 1434 267 133 37 chr3 182437636 182438262 -45086316 + L2 LINE L2 2179 2864 -450 253 264 149 0 chr3 182438364 182438451 -45086127 + MIR SINE MIR 51 150 -112 21 36 0 0 chr3 182438453 182438481 -45086097 + AT_rich Low_complexity Low_complexity 1 28 0 462 274 107 32 chr3 182438702 182438954 -45085624 - L2 LINE L2 0 3313 3043 262 218 113 45 chr3 182440002 182440135 -45084443 + Charlie7 DNA MER1_type 214 355 -2257 1031 223 132 14 chr3 182440141 182440559 -45084019 + Charlie7 DNA MER1_type 1498 1964 -648 232 229 14 14 chr3 182440587 182440657 -45083921 + (TA)n Simple_repeat Simple_repeat 2 71 0 342 199 55 116 chr3 182440671 182440852 -45083726 + Charlie7 DNA MER1_type 2019 2188 -424 323 281 62 43 chr3 182440866 182441076 -45083502 + L1MC4a LINE L1 5694 5907 -1901 207 260 65 26 chr3 182442223 182442300 -45082278 + MIR SINE MIR 70 149 -113 21 36 0 0 chr3 182442519 182442547 -45082031 + AT_rich Low_complexity Low_complexity 1 28 0 192 152 0 0 chr3 182442797 182442830 -45081748 + (TATG)n Simple_repeat Simple_repeat 4 36 0 21 0 0 0 chr3 182443018 182443039 -45081539 + AT_rich Low_complexity Low_complexity 1 21 0 405 337 35 42 chr3 182443039 182443300 -45081278 - L2 LINE L2 -109 3163 2905 499 260 56 63 chr3 182443775 182444060 -45080518 - L1ME LINE L1 -339 5782 5500 648 241 77 0 chr3 182444344 182444539 -45080039 + MER102a DNA MER1_type 116 325 -5 2257 108 0 0 chr3 182445514 182445821 -45078757 + AluSc SINE Alu 1 307 -2 1112 219 35 47 chr3 182445865 182446354 -45078224 - L1MC5 LINE L1 -26 7935 7453 248 213 0 0 chr3 182446466 182446513 -45078065 + (TG)n Simple_repeat Simple_repeat 1 47 0 228 143 0 0 chr3 182446585 182446627 -45077951 + (TCCA)n Simple_repeat Simple_repeat 1 42 0 945 251 62 98 chr3 182447750 182448310 -45076268 + L2 LINE L2 2474 3299 -14 204 40 0 0 chr3 182448311 182448336 -45076242 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 1847 141 38 7 chr3 182449104 182449394 -45075184 - AluJb SINE Alu -13 299 1 4602 125 21 4 chr3 182452394 182453144 -45071434 - L1MA4 LINE L1 -3 6297 5535 999 253 93 32 chr3 182457282 182457689 -45066889 - MLT1J1 LTR MaLR -9 437 6 666 292 5 14 chr3 182458653 182458869 -45065709 - MER58C DNA MER1_type -1 214 1 888 171 33 67 chr3 182458880 182459090 -45065488 - MER3 DNA MER1_type -4 205 3 1529 175 208 8 chr3 182459653 182460013 -45064565 - MER63B DNA MER1_type -4 432 1 300 310 0 10 chr3 182462957 182463057 -45061521 + CT-rich Low_complexity Low_complexity 3 101 0 206 174 0 22 chr3 182464958 182465004 -45059574 + T-rich Low_complexity Low_complexity 5 49 0 1224 223 68 27 chr3 182465148 182465516 -45059062 - L1ME1 LINE L1 -6 6160 5778 429 233 0 0 chr3 182465952 182466068 -45058510 + (TA)n Simple_repeat Simple_repeat 1 116 0 5821 27 0 11 chr3 182466136 182466833 -45057745 - L1PA3 LINE L1 -3 6152 5464 1432 261 104 39 chr3 182466856 182468091 -45056487 - L1ME3 LINE L1 -23 6073 4750 3136 82 0 0 chr3 182468108 182468508 -45056070 + MLT2A1 LTR ERVL 1 400 -44 376 141 71 18 chr3 182468529 182468699 -45055879 + (TA)n Simple_repeat Simple_repeat 2 180 0 399 286 63 17 chr3 182468762 182469000 -45055578 - L1ME3 LINE L1 -1563 4517 4269 979 271 81 44 chr3 182469013 182469343 -45055235 - L1ME3 LINE L1 -1851 4229 3913 6586 78 20 6 chr3 182469343 182470813 -45053765 - L1PA8 LINE L1 -15 6157 4675 979 271 81 44 chr3 182470813 182471099 -45053479 - L1ME3 LINE L1 -2167 3913 3590 446 277 90 86 chr3 182471107 182471374 -45053204 - L1ME3 LINE L1 -2583 3497 3230 3198 261 50 14 chr3 182471443 182472262 -45052316 - L1ME3 LINE L1 -4981 1089 224 1558 194 35 53 chr3 182472262 182472659 -45051919 + MLT1B LTR MaLR 1 390 0 3198 261 50 14 chr3 182472659 182472864 -45051714 - L1ME3 LINE L1 -5846 224 28 273 204 51 0 chr3 182472887 182472985 -45051593 - L1M4 LINE L1 -2911 3235 3133 494 281 90 28 chr3 182473181 182473580 -45050998 - L1M4 LINE L1 -3526 2620 2197 22 35 0 0 chr3 182473858 182473887 -45050691 + AT_rich Low_complexity Low_complexity 1 29 0 2200 121 0 22 chr3 182474957 182475270 -45049308 - AluSx SINE Alu -6 306 1 23 68 0 0 chr3 182476046 182476090 -45048488 + AT_rich Low_complexity Low_complexity 1 44 0 742 186 19 39 chr3 182476553 182476709 -45047869 - FRAM SINE Alu -30 146 1 2113 97 23 0 chr3 182476716 182476892 -45047686 - AluY SINE Alu -3 308 121 648 26 0 0 chr3 182476892 182476970 -45047608 + (TG)n Simple_repeat Simple_repeat 2 79 0 2113 97 23 0 chr3 182476970 182477092 -45047486 - AluY SINE Alu -190 121 3 1269 281 73 19 chr3 182477326 182477749 -45046829 + LTR33A LTR ERVL 1 446 -77 1623 67 0 0 chr3 182478795 182478984 -45045594 + L1PA7 LINE L1 5946 6137 -17 7454 26 1 0 chr3 182478984 182479852 -45044726 + L1PA3 LINE L1 5275 6152 -3 1623 67 0 0 chr3 182479852 182479871 -45044707 + L1PA7 LINE L1 6136 6154 0 2093 82 0 0 chr3 182479887 182480144 -45044434 - AluY SINE Alu -17 294 38 728 197 0 0 chr3 182480458 182480580 -45043998 + FLAM_C SINE Alu 1 122 -11 384 125 18 0 chr3 182481858 182481914 -45042664 + FLAM SINE Alu 66 122 -11 285 163 33 120 chr3 182482619 182482711 -45041867 - L1ME2 LINE L1 -118 6046 5963 259 241 35 9 chr3 182486323 182486439 -45038139 + (TA)n Simple_repeat Simple_repeat 1 119 0 24 0 0 0 chr3 182486439 182486463 -45038115 + AT_rich Low_complexity Low_complexity 1 24 0 1651 193 16 0 chr3 182486471 182486777 -45037801 + AluJo SINE Alu 1 311 -1 1818 223 126 40 chr3 182487131 182487306 -45037272 - L1ME3A LINE L1 -9 6161 6002 2242 109 3 0 chr3 182487306 182487600 -45036978 - AluSp SINE Alu -18 295 1 1818 223 126 40 chr3 182487600 182487972 -45036606 - L1ME3A LINE L1 -168 6002 5567 269 214 36 36 chr3 182489114 182489198 -45035380 + MIR SINE MIR 84 167 -95 1182 279 95 34 chr3 182489250 182489723 -45034855 - L2 LINE L2 0 3313 2812 1553 278 99 59 chr3 182489746 182491470 -45033108 - L1ME LINE L1 -494 5651 3862 539 276 47 75 chr3 182491563 182492076 -45032502 - L1 LINE L1 -3435 2694 2194 37110 85 24 7 chr3 182492095 182498159 -45026419 - L1PA6 LINE L1 -3 6151 12 1837 176 7 3 chr3 182498358 182498659 -45025919 - AluJb SINE Alu -10 302 1 1056 140 17 0 chr3 182499002 182499181 -45025397 + L1MA5 LINE L1 6115 6296 -4 340 305 115 15 chr3 182499206 182499537 -45025041 - HAL1 LINE L1 -914 1593 1230 402 293 69 72 chr3 182499573 182499948 -45024630 - L1ME LINE L1 -5738 381 8 297 312 87 40 chr3 182500899 182501072 -45023506 - MER5A DNA MER1_type 0 189 9 1113 206 62 8 chr3 182501114 182501419 -45023159 + MER33 DNA MER1_type 1 310 -14 1872 154 104 89 chr3 182501420 182501912 -45022666 - MLT1D LTR MaLR -2 503 5 1857 183 135 3 chr3 182504046 182504423 -45020155 + L1MDa LINE L1 18 444 -6096 258 290 150 10 chr3 182504431 182504531 -45020047 + L1MDa LINE L1 496 776 -5764 543 153 82 100 chr3 182504568 182504738 -45019840 + L1M4 LINE L1 4641 4807 -1339 235 146 0 0 chr3 182504734 182504782 -45019796 + L1MD1 LINE L1 6195 6242 0 * 1581 183 43 10 chr3 182505086 182505387 -45019191 - AluJo SINE Alu -1 311 1 383 42 0 0 chr3 182505389 182505437 -45019141 + Tigger1 DNA MER2_type 2184 2231 -187 1194 117 39 15 chr3 182505474 182505679 -45018899 + Tigger1 DNA MER2_type 2209 2418 0 297 0 0 0 chr3 182505712 182505745 -45018833 + (CA)n Simple_repeat Simple_repeat 2 34 0 561 154 329 14 chr3 182507585 182507728 -45016850 + MER5A DNA MER1_type 2 189 0 1094 256 85 55 chr3 182507762 182508231 -45016347 + L2 LINE L2 2831 3313 0 589 296 58 5 chr3 182508519 182508708 -45015870 - MIR SINE MIR -59 203 5 303 28 0 0 chr3 182508879 182508915 -45015663 + (TGGA)n Simple_repeat Simple_repeat 1 36 0 535 279 6 38 chr3 182510004 182510162 -45014416 - MER5B DNA MER1_type -24 154 2 227 271 57 0 chr3 182510323 182510393 -45014185 - L1ME4a LINE L1 -97 6024 5951 10897 41 8 1 chr3 182510395 182512520 -45012058 - L1PA5 LINE L1 -1 6153 4019 364 138 454 0 chr3 182512874 182513004 -45011574 - MER53 DNA DNA 0 189 1 1932 138 0 0 chr3 182513246 182513522 -45011056 + AluSx SINE Alu 29 304 -8 855 73 16 0 chr3 182514105 182514229 -45010349 - L1P LINE L1 -1907 4239 4114 4956 69 0 0 chr3 182514229 182514863 -45009715 + L1PA8 LINE L1 5524 6162 -10 201 74 0 0 chr3 182514916 182514943 -45009635 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 252 299 91 39 chr3 182515373 182515627 -45008951 + L2 LINE L2 2817 3083 -189 510 326 52 9 chr3 182515892 182516120 -45008458 + MIR SINE MIR 21 260 -2 251 291 26 51 chr3 182516355 182516472 -45008106 + MIR SINE MIR 25 138 -124 198 0 0 0 chr3 182516630 182516652 -45007926 + (GAA)n Simple_repeat Simple_repeat 1 22 0 7085 57 6 0 chr3 182518814 182519884 -45004694 + L1PA5 LINE L1 5079 6153 -1 320 245 0 0 chr3 182520138 182520244 -45004334 - L1MA4 LINE L1 -10 6290 6185 2319 163 40 18 chr3 182520247 182520744 -45003834 - L1MA4A LINE L1 -181 6122 5615 1906 155 38 22 chr3 182520744 182521111 -45003467 - THE1C LTR MaLR 0 375 3 3055 127 12 16 chr3 182521111 182521624 -45002954 - THE1C-int LTR MaLR -1 1579 1069 706 119 75 8 chr3 182521624 182521758 -45002820 - MER57B LTR ERV1 0 434 292 7722 235 77 42 chr3 182521760 182522192 -45002386 - L1 LINE L1 -3638 3210 2795 3043 96 35 7 chr3 182522192 182522652 -45001926 - L1PB1 LINE L1 -3 6148 5676 7722 235 77 42 chr3 182522652 182525309 -44999269 - L1 LINE L1 -4053 2795 10 2343 110 0 0 chr3 182525355 182525663 -44998915 + AluSg SINE Alu 1 308 -2 4314 184 33 24 chr3 182525702 182526554 -44998024 - MER21B LTR ERV1 -1 862 3 1591 168 115 25 chr3 182526636 182527028 -44997550 - MSTC LTR MaLR -1 427 1 407 277 15 23 chr3 182527388 182527518 -44997060 - L2 LINE L2 -2 3270 3142 480 282 19 13 chr3 182528350 182528506 -44996072 - MIR3 SINE MIR -10 198 42 370 236 87 0 chr3 182529450 182529611 -44994967 - LTR33 LTR ERVL -21 500 326 432 296 50 15 chr3 182529677 182529860 -44994718 - LTR33 LTR ERVL -318 205 40 361 232 122 4 chr3 182531595 182531730 -44992848 + MIR SINE MIR 35 184 -64 253 369 133 65 chr3 182531926 182532311 -44992267 - L2 LINE L2 -36 3236 2826 427 293 61 24 chr3 182532342 182532580 -44991998 + MLT1J LTR MaLR 3 211 -239 333 240 67 0 chr3 182532634 182532738 -44991840 + MLT1J LTR MaLR 378 488 -23 679 270 44 33 chr3 182532907 182533136 -44991442 - MIR SINE MIR -24 238 10 263 273 32 84 chr3 182533898 182534052 -44990526 - MIR SINE MIR -59 203 58 2708 64 0 0 chr3 182534257 182534614 -44989964 + L1PA8 LINE L1 5795 6151 -21 27 29 0 0 chr3 182534895 182534929 -44989649 + AT_rich Low_complexity Low_complexity 1 34 0 2137 98 0 0 chr3 182535396 182535673 -44988905 + AluSq SINE Alu 7 283 -30 812 264 86 14 chr3 182536870 182537090 -44987488 - MIR SINE MIR -2 260 25 527 313 100 59 chr3 182537735 182538392 -44986186 - L2 LINE L2 -1 3271 2594 305 263 256 32 chr3 182538414 182538570 -44986008 - MER91A DNA MER1_type -1 195 5 208 324 27 0 chr3 182538630 182538704 -44985874 - L2 LINE L2 -812 2502 2427 1504 96 0 15 chr3 182539129 182539327 -44985251 - AluSx SINE Alu -117 195 1 726 258 0 32 chr3 182539571 182539761 -44984817 - MLT1I LTR MaLR 0 409 226 946 222 30 0 chr3 182539775 182539978 -44984600 - MER3 DNA MER1_type 0 209 1 387 295 9 0 chr3 182540023 182540128 -44984450 - MLT1I LTR MaLR -300 109 4 2882 176 145 7 chr3 182540141 182540823 -44983755 + LTR48 LTR ERV1 12 787 0 379 255 41 0 chr3 182541014 182541112 -44983466 - MIR SINE MIR -70 192 91 2174 134 0 0 chr3 182544586 182544892 -44979686 - AluSq SINE Alu -7 306 1 2250 87 3 3 chr3 182545563 182545862 -44978716 + AluY SINE Alu 1 299 -12 316 310 149 29 chr3 182545904 182546185 -44978393 + L1ME4a LINE L1 5672 5986 -135 1992 110 0 0 chr3 182546308 182546572 -44978006 + AluSx SINE Alu 39 302 -10 21 0 0 0 chr3 182547019 182547040 -44977538 + AT_rich Low_complexity Low_complexity 1 21 0 355 239 0 77 chr3 182547057 182547174 -44977404 - MIR SINE MIR -36 226 119 450 314 109 18 chr3 182548056 182548276 -44976302 + MIR SINE MIR 4 243 -19 464 207 112 0 chr3 182548517 182548633 -44975945 - MER63 DNA MER1_type -307 755 1 730 75 0 30 chr3 182549016 182549150 -44975428 + (TAGA)n Simple_repeat Simple_repeat 4 133 0 2308 67 9 0 chr3 182549733 182550048 -44974530 - L1PA8 LINE L1 -20 6152 5835 22 0 0 0 chr3 182550143 182550165 -44974413 + AT_rich Low_complexity Low_complexity 1 22 0 735 225 75 39 chr3 182550235 182550477 -44974101 - MIR SINE MIR -6 256 14 229 262 47 0 chr3 182551278 182551385 -44973193 + L1MCc LINE L1 1369 1480 -4943 189 0 0 0 chr3 182551991 182552012 -44972566 + (CA)n Simple_repeat Simple_repeat 2 22 0 627 148 0 17 chr3 182552042 182552157 -44972421 + AluJb SINE Alu 200 312 0 418 231 92 8 chr3 182552434 182552564 -44972014 + MIR SINE MIR 71 211 -51 665 337 131 17 chr3 182552620 182552964 -44971614 - L2 LINE L2 -1 3271 2889 3116 58 8 99 chr3 182553223 182553726 -44970852 + L1PB1 LINE L1 5695 6151 0 3856 174 42 17 chr3 182553847 182554690 -44969888 + L1MB4 LINE L1 5315 6178 -2 1154 257 28 50 chr3 182556138 182556643 -44967935 + HAL1 LINE L1 1246 1739 -768 278 244 102 74 chr3 182556815 182557139 -44967439 + HAL1 LINE L1 2086 2418 -89 2172 127 3 0 chr3 182558889 182559196 -44965382 - AluSx SINE Alu -4 308 1 477 0 0 0 chr3 182560220 182560273 -44964305 + (CA)n Simple_repeat Simple_repeat 1 53 0 339 242 55 22 chr3 182561042 182561133 -44963445 + MIR3 SINE MIR 108 201 -7 207 250 29 0 chr3 182561614 182561682 -44962896 + (TA)n Simple_repeat Simple_repeat 2 71 0 23 54 0 0 chr3 182561902 182561939 -44962639 + AT_rich Low_complexity Low_complexity 1 37 0 282 252 126 39 chr3 182562653 182562756 -44961822 + MIR SINE MIR 74 185 -77 328 240 134 73 chr3 182564830 182565064 -44959514 + MIR SINE MIR 4 248 -14 193 315 90 22 chr3 182565203 182565381 -44959197 - L3 LINE CR1 -222 1355 1166 542 309 150 32 chr3 182566868 182567214 -44957364 - L3 LINE CR1 -454 1123 737 265 346 116 35 chr3 182568446 182568764 -44955814 - L2 LINE L2 -623 2691 2348 464 293 9 84 chr3 182568813 182569038 -44955540 - LTR16A1 LTR ERVL 0 457 250 643 273 36 55 chr3 182569241 182569494 -44955084 + LTR16B LTR ERVL 205 452 -12 263 316 75 56 chr3 182569793 182570169 -44954409 - L2 LINE L2 -1012 2302 1920 715 328 36 4 chr3 182571146 182571393 -44953185 + MIR SINE MIR 6 260 -2 227 274 94 60 chr3 182571453 182571570 -44953008 + LTR33 LTR ERVL 1 121 -400 378 250 0 0 chr3 182571739 182571827 -44952751 + MLT1J LTR MaLR 424 511 0 255 222 48 16 chr3 182572937 182573000 -44951578 - L3 LINE CR1 -7 1570 1506 22 0 0 0 chr3 182573266 182573288 -44951290 + AT_rich Low_complexity Low_complexity 1 22 0 663 298 58 45 chr3 182573314 182573690 -44950888 + L1ME4a LINE L1 5503 5883 -238 603 318 69 4 chr3 182573747 182573980 -44950598 + MIR SINE MIR 14 261 -1 1780 123 0 37 chr3 182574699 182574967 -44949611 + AluSc SINE Alu 35 292 -17 189 310 119 50 chr3 182575362 182575623 -44948955 - L2 LINE L2 -93 3220 2942 1895 207 34 16 chr3 182575690 182575941 -44948637 + L1MA4 LINE L1 5818 6082 -218 5728 59 1 1 chr3 182575941 182576619 -44947959 + L1PA8 LINE L1 5495 6172 0 1895 207 34 16 chr3 182576619 182576811 -44947767 + L1MA4 LINE L1 6082 6269 -31 366 280 30 0 chr3 182577240 182577340 -44947238 + MIR3 SINE MIR 106 208 0 207 0 0 0 chr3 182577654 182577677 -44946901 + (A)n Simple_repeat Simple_repeat 1 23 0 389 273 152 0 chr3 182577889 182577988 -44946590 + MIR SINE MIR 1 114 -148 339 25 0 0 chr3 182578232 182578272 -44946306 + (ATG)n Simple_repeat Simple_repeat 2 41 0 2135 130 0 3 chr3 182578459 182578767 -44945811 + AluSg SINE Alu 1 307 -3 314 322 25 0 chr3 182578812 182578930 -44945648 - L2 LINE L2 -260 3012 2892 505 297 73 14 chr3 182579025 182579244 -44945334 - MIR SINE MIR -11 251 20 533 237 122 0 chr3 182579426 182579582 -44944996 + MIR SINE MIR 82 256 -6 392 227 62 22 chr3 182579631 182579765 -44944813 - MIR SINE MIR -58 150 16 207 245 20 0 chr3 182581265 182581314 -44943264 + MER5A DNA MER1_type 136 185 -4 1213 266 75 33 chr3 182581364 182581819 -44942759 + L2 LINE L2 2066 2539 -775 209 244 73 24 chr3 182581900 182581982 -44942596 + MIR SINE MIR 171 256 -6 251 228 53 0 chr3 182582141 182582198 -44942380 + L2 LINE L2 3196 3255 -58 328 290 32 0 chr3 182583324 182583448 -44941130 + (TA)n Simple_repeat Simple_repeat 2 129 0 303 140 0 0 chr3 182583751 182583801 -44940777 + (TCCA)n Simple_repeat Simple_repeat 3 52 0 344 288 63 0 chr3 182583806 182583917 -44940661 - L2 LINE L2 -19 3253 3136 212 196 0 22 chr3 182584256 182584302 -44940276 - L2 LINE L2 -14 3299 3255 2951 125 65 62 chr3 182584712 182585265 -44939313 + LTR10A LTR ERV1 1 555 -54 293 280 97 0 chr3 182585591 182585684 -44938894 - MIR SINE MIR -159 103 2 457 133 36 0 chr3 182586391 182586474 -44938104 + MIR SINE MIR 118 203 -59 217 322 34 48 chr3 182587492 182587638 -44936940 - L2 LINE L2 -301 2971 2828 888 190 24 11 chr3 182587673 182587860 -44936718 + MER5A DNA MER1_type 2 175 -3 518 265 88 7 chr3 182587889 182588036 -44936542 + MER5B DNA MER1_type 20 178 0 243 0 0 0 chr3 182588399 182588426 -44936152 + (TG)n Simple_repeat Simple_repeat 2 28 0 473 248 188 0 chr3 182589020 182589137 -44935441 - MER91C DNA MER1_type -1 139 1 424 267 149 32 chr3 182589737 182589958 -44934620 + MIR SINE MIR 16 262 0 560 237 16 81 chr3 182590613 182590799 -44933779 + MER112 DNA MER1_type 14 187 -73 2521 52 0 26 chr3 182590940 182591249 -44933329 + AluY SINE Alu 1 301 -10 246 88 0 0 chr3 182591318 182591352 -44933226 + L1MA3 LINE L1 6272 6305 0 301 292 90 7 chr3 182591952 182592096 -44932482 + MIR SINE MIR 89 244 -18 180 97 0 0 chr3 182593721 182593752 -44930826 + (TGGG)n Simple_repeat Simple_repeat 3 33 0 1043 186 41 6 chr3 182593760 182593932 -44930646 - MER45A DNA AcHobo 0 178 1 366 265 10 20 chr3 182595059 182595161 -44929417 + MIR SINE MIR 162 262 0 895 187 62 48 chr3 182595362 182595571 -44929007 + MER20 DNA MER1_type 2 213 -6 312 278 35 35 chr3 182595587 182595731 -44928847 + MIR SINE MIR 87 230 -32 180 0 0 0 chr3 182596633 182596653 -44927925 + (CAA)n Simple_repeat Simple_repeat 2 21 0 334 268 71 36 chr3 182596676 182596788 -44927790 - L2 LINE L2 -3 3269 3154 225 0 0 0 chr3 182597451 182597476 -44927102 + (A)n Simple_repeat Simple_repeat 1 25 0 2158 117 3 0 chr3 182598702 182598992 -44925586 + AluSx SINE Alu 1 291 -21 1911 274 57 65 chr3 182599842 182600532 -44924046 + MER115 DNA AcHobo 1 684 -9 959 189 6 12 chr3 182600689 182600853 -44923725 - FRAM SINE Alu -3 163 1 1972 145 82 17 chr3 182601523 182601875 -44922703 - THE1C LTR MaLR 0 375 1 1062 218 77 18 chr3 182602143 182602560 -44922018 - MER92B LTR ERV1 -2 552 11 512 295 187 42 chr3 182602643 182603050 -44921528 + L2 LINE L2 2844 3309 -4 2350 87 0 0 chr3 182603081 182603370 -44921208 + AluSc SINE Alu 1 289 -20 713 56 80 0 chr3 182603370 182603532 -44921046 + (TA)n Simple_repeat Simple_repeat 2 176 0 257 111 19 19 chr3 182603532 182603586 -44920992 + LTR66 LTR ERVL 403 456 -154 23 33 0 0 chr3 182603701 182603731 -44920847 + AT_rich Low_complexity Low_complexity 1 30 0 568 181 0 28 chr3 182604625 182604807 -44919771 + (CTTAA)n Simple_repeat Simple_repeat 3 179 0 232 153 203 0 chr3 182605005 182605064 -44919514 + MIR SINE MIR 186 256 -6 568 303 0 0 chr3 182605752 182605884 -44918694 + MER5A DNA MER1_type 2 133 -56 1656 127 96 8 chr3 182605885 182606170 -44918408 - AluSx SINE Alu 0 308 1 1665 243 39 68 chr3 182606754 182607338 -44917240 + MER74B LTR ERVL 56 622 0 2283 120 0 0 chr3 182607344 182607653 -44916925 + AluSg SINE Alu 2 310 0 480 262 0 16 chr3 182607883 182608009 -44916569 - L2 LINE L2 -1 3312 3189 275 253 36 24 chr3 182608588 182608671 -44915907 + L1ME LINE L1 52 135 -5984 363 299 92 53 chr3 182609164 182609502 -44915076 + L1ME LINE L1 602 952 -5167 26370 89 5 3 chr3 182610417 182614829 -44909749 - L1PA7 LINE L1 0 6469 2056 1015 9 0 0 chr3 182614829 182614943 -44909635 - AluYb8 SINE Alu 0 318 205 3152 106 11 4 chr3 182614943 182615506 -44909072 - L1PA7 LINE L1 -4396 2065 1508 206 173 39 58 chr3 182615747 182615799 -44908779 + L3 LINE CR1 325 375 -1202 1921 120 25 0 chr3 182617023 182617044 -44907534 + AluSq SINE Alu 1 20 -293 336 24 0 0 chr3 182617044 182617085 -44907493 + (CCCTAA)n Simple_repeat Simple_repeat 2 42 0 1921 120 25 0 chr3 182617085 182617337 -44907241 + AluSq SINE Alu 20 281 -32 695 43 0 11 chr3 182617339 182617431 -44907147 + (GAAA)n Simple_repeat Simple_repeat 2 92 0 305 235 15 0 chr3 182617908 182617976 -44906602 - L2 LINE L2 0 3313 3245 183 250 0 0 chr3 182619226 182619270 -44905308 - MIR SINE MIR -24 238 195 698 319 158 37 chr3 182619378 182620286 -44904292 - L2 LINE L2 0 3272 2180 297 331 50 8 chr3 182620283 182620404 -44904174 + L2 LINE L2 3188 3313 0 * 262 271 125 30 chr3 182621301 182621435 -44903143 + MIR3 SINE MIR 9 156 -52 2146 116 0 23 chr3 182621449 182621759 -44902819 - AluSx SINE Alu -3 309 7 563 307 107 4 chr3 182621993 182622218 -44902360 - MIR SINE MIR -13 249 2 365 298 112 17 chr3 182622962 182623140 -44901438 + L1MC5 LINE L1 7277 7471 -490 289 294 0 0 chr3 182623243 182623345 -44901233 + L1MD1 LINE L1 5628 5729 -392 2079 124 24 3 chr3 182623357 182623647 -44900931 + AluSx SINE Alu 1 296 -16 237 188 21 0 chr3 182623716 182623764 -44900814 + (GTATG)n Simple_repeat Simple_repeat 3 51 0 520 184 135 0 chr3 182623789 182623930 -44900648 + MIR SINE MIR 90 249 -13 677 125 36 0 chr3 182624096 182624208 -44900370 - L1MC1 LINE L1 -6 6327 6212 254 272 0 26 chr3 182624693 182624822 -44899756 + MIR SINE MIR 2 166 -96 211 355 101 24 chr3 182626618 182626787 -44897791 + L2 LINE L2 2883 3064 -208 1777 154 58 10 chr3 182626972 182627264 -44897314 + AluSg SINE Alu 1 306 -4 253 200 0 0 chr3 182627382 182627427 -44897151 + L2 LINE L2 3226 3270 -2 1005 80 12 12 chr3 182627629 182627792 -44896786 + (TTTC)n Simple_repeat Simple_repeat 2 164 0 2193 104 0 0 chr3 182627794 182628081 -44896497 - AluSq SINE Alu -24 289 3 2320 68 0 0 chr3 182628520 182628824 -44895754 - AluSg SINE Alu 0 304 1 569 266 100 86 chr3 182629711 182630061 -44894517 - L2 LINE L2 0 3313 2959 185 220 0 17 chr3 182630760 182630819 -44893759 + CT-rich Low_complexity Low_complexity 3 60 0 983 277 51 49 chr3 182631402 182631889 -44892689 - LTR33 LTR ERVL -3 518 31 1334 181 36 0 chr3 182631965 182632268 -44892310 + L1MD1 LINE L1 5929 6242 0 3082 180 100 22 chr3 182632716 182633493 -44891085 + L1MA9 LINE L1 5451 6288 -24 367 130 0 0 chr3 182633517 182633586 -44890992 + L1 LINE L1 4982 5050 -1096 1740 11 0 0 chr3 182634019 182634210 -44890368 + AluYa5 SINE Alu 121 311 0 263 173 0 111 chr3 182634514 182634595 -44889983 - LTR33A LTR ERVL -8 515 444 261 0 0 0 chr3 182634762 182634791 -44889787 + (CTG)n Simple_repeat Simple_repeat 1 29 0 1626 152 12 8 chr3 182635264 182635520 -44889058 + AluJo SINE Alu 11 267 -45 340 91 0 0 chr3 182635521 182635565 -44889013 + (GGGAA)n Simple_repeat Simple_repeat 4 47 0 700 145 15 0 chr3 182635565 182635696 -44888882 + GA-rich Low_complexity Low_complexity 1 133 0 2060 98 25 0 chr3 182635699 182635973 -44888605 + AluSp SINE Alu 1 281 -32 965 87 37 0 chr3 182635973 182636134 -44888444 + GA-rich Low_complexity Low_complexity 2 168 0 2001 155 3 0 chr3 182636774 182637077 -44887501 + AluSx SINE Alu 1 304 -8 38748 67 6 5 chr3 182637077 182643218 -44881360 + L1PA5 LINE L1 3 6154 0 21 0 0 0 chr3 182643317 182643338 -44881240 + AT_rich Low_complexity Low_complexity 1 21 0 2167 125 3 3 chr3 182643394 182643705 -44880873 - AluSx SINE Alu -1 311 1 23 86 0 0 chr3 182643751 182643809 -44880769 + AT_rich Low_complexity Low_complexity 1 58 0 213 121 0 0 chr3 182645406 182645439 -44879139 + (TG)n Simple_repeat Simple_repeat 2 34 0 323 283 153 29 chr3 182645466 182645680 -44878898 - MIR SINE MIR -10 252 15 363 295 132 29 chr3 182646012 182646293 -44878285 - L1ME4a LINE L1 -3 6118 5809 321 253 97 26 chr3 182646747 182647067 -44877511 - L1ME4a LINE L1 -467 5654 5285 574 261 223 0 chr3 182647262 182647500 -44877078 + Charlie2 DNA MER1_type 29 319 -2463 811 216 142 9 chr3 182647511 182647743 -44876835 + Charlie2 DNA MER1_type 1859 2121 -741 373 309 46 0 chr3 182647869 182648021 -44876557 - MLT1J2 LTR MaLR -26 424 266 2164 125 16 0 chr3 182648080 182648385 -44876193 - AluSx SINE Alu -2 310 1 1005 218 141 34 chr3 182648530 182649007 -44875571 + Charlie2 DNA MER1_type 2335 2862 0 548 254 67 34 chr3 182650084 182650293 -44874285 + L2 LINE L2 3098 3313 0 200 57 0 29 chr3 182650742 182650777 -44873801 + (TTTG)n Simple_repeat Simple_repeat 2 35 0 2202 120 10 0 chr3 182651688 182651997 -44872581 + AluSx SINE Alu 1 312 0 535 312 132 14 chr3 182652078 182652495 -44872083 + L1MC4a LINE L1 4019 4484 -1662 434 280 33 28 chr3 182652611 182652822 -44871756 + L1MC4a LINE L1 5674 5885 -1923 509 222 21 139 chr3 182653090 182653284 -44871294 + MIR SINE MIR 92 262 0 317 293 15 8 chr3 182653311 182653444 -44871134 - L1ME LINE L1 -376 5745 5612 1797 95 38 26 chr3 182654702 182654966 -44869612 - AluSx SINE Alu -45 267 1 180 0 0 0 chr3 182655479 182655499 -44869079 + (CAGGG)n Simple_repeat Simple_repeat 1 20 0 2407 86 3 0 chr3 182656748 182657052 -44867526 - AluSg SINE Alu -5 305 1 267 394 38 8 chr3 182657208 182657340 -44867238 + MIR3 SINE MIR 29 164 -44 228 111 0 0 chr3 182657386 182657422 -44867156 + (T)n Simple_repeat Simple_repeat 1 36 0 335 289 179 16 chr3 182657535 182657725 -44866853 - L3b LINE CR1 -130 1453 1233 2332 91 3 3 chr3 182657844 182658142 -44866436 - AluSx SINE Alu -14 298 1 249 304 42 43 chr3 182658465 182658589 -44865989 + MIR SINE MIR 39 161 -63 301 23 0 23 chr3 182659402 182659446 -44865132 - AluY SINE Alu -259 43 1 766 224 18 18 chr3 182659674 182659844 -44864734 - MER5A DNA MER1_type 0 189 20 418 314 26 5 chr3 182660146 182660337 -44864241 + MER117 DNA MER1_type 1 195 -2 25 51 0 0 chr3 182660642 182660681 -44863897 + AT_rich Low_complexity Low_complexity 1 39 0 668 278 162 41 chr3 182661022 182661367 -44863211 - L2 LINE L2 -1 3312 2926 329 266 20 29 chr3 182661497 182661633 -44862945 + MER20B DNA MER1_type 82 218 -1 717 305 71 0 chr3 182661635 182661874 -44862704 - L2 LINE L2 -508 2806 2551 249 33 0 0 chr3 182663174 182663204 -44861374 + (A)n Simple_repeat Simple_repeat 1 30 0 391 298 101 40 chr3 182663368 182663596 -44860982 + L2 LINE L2 3031 3272 0 1953 114 24 3 chr3 182664361 182664650 -44859928 + AluSx SINE Alu 1 295 -17 2210 104 0 58 chr3 182665073 182665399 -44859179 - AluSx SINE Alu -5 307 1 1815 209 81 47 chr3 182665715 182666331 -44858247 + L1MD2 LINE L1 5722 6358 -1 23 33 0 0 chr3 182666649 182666679 -44857899 + AT_rich Low_complexity Low_complexity 1 30 0 2476 57 10 25 chr3 182667108 182667422 -44857156 + AluY SINE Alu 1 309 -2 247 266 125 23 chr3 182668378 182668506 -44856072 + L1MC5 LINE L1 7742 7882 -79 276 365 63 77 chr3 182669111 182669539 -44855039 + L2 LINE L2 2827 3248 -24 656 192 29 35 chr3 182670526 182670698 -44853880 - MER104 DNA Tc2 -3 177 7 468 222 72 0 chr3 182670731 182670884 -44853694 - MER113 DNA MER1_type? -325 196 33 1279 120 3 215 chr3 182671405 182671787 -44852791 + AluJb SINE Alu 2 302 0 25 51 0 0 chr3 182672793 182672832 -44851746 + GC_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr3 182672975 182672997 -44851581 + GC_rich Low_complexity Low_complexity 1 22 0 221 182 18 0 chr3 182673084 182673139 -44851439 + C-rich Low_complexity Low_complexity 2 57 0 23 40 0 0 chr3 182673232 182673257 -44851321 + GC_rich Low_complexity Low_complexity 1 25 0 238 250 0 0 chr3 182673292 182673336 -44851242 + (CA)n Simple_repeat Simple_repeat 1 44 0 234 30 0 0 chr3 182673357 182673390 -44851188 - L1MA1 LINE L1 0 6302 6270 567 233 132 11 chr3 182673428 182673617 -44850961 - LTR16A1 LTR ERVL 0 457 246 259 276 0 78 chr3 182673613 182673729 -44850849 - LTR16A1 LTR ERVL -350 107 1 * 200 233 0 0 chr3 182673754 182673797 -44850781 - L2 LINE L2 -843 2471 2429 887 208 91 5 chr3 182674165 182674362 -44850216 + MER58C DNA MER1_type 1 214 -1 2312 86 0 13 chr3 182674536 182674838 -44849740 - AluY SINE Alu -13 298 1 1790 116 82 99 chr3 182674839 182675192 -44849386 + MSTA LTR MaLR 29 375 -53 315 264 127 32 chr3 182675228 182675410 -44849168 - L1ME4a LINE L1 -28 6093 5930 2554 142 36 5 chr3 182675410 182675825 -44848753 - MSTA LTR MaLR 0 428 1 315 264 127 32 chr3 182675825 182676041 -44848537 - L1ME4a LINE L1 -191 5930 5623 1083 297 52 37 chr3 182676042 182676642 -44847936 + L2 LINE L2 2050 2658 -656 370 268 122 8 chr3 182677032 182677155 -44847423 + L2 LINE L2 3134 3270 -2 492 293 45 34 chr3 182677157 182677423 -44847155 - L1ME4a LINE L1 -498 5623 5355 611 259 0 0 chr3 182677616 182677747 -44846831 + MER94 DNA DNA 3 133 -1 2271 113 21 43 chr3 182677874 182677944 -44846634 - THE1B LTR MaLR 0 364 294 2422 83 0 0 chr3 182677944 182678246 -44846332 + AluY SINE Alu 1 302 -9 2271 113 21 43 chr3 182678246 182678547 -44846031 - THE1B LTR MaLR -70 294 1 12114 85 3 7 chr3 182678547 182680133 -44844445 - THE1B-int LTR MaLR 0 1580 1 2360 123 19 25 chr3 182680133 182680499 -44844079 - THE1B LTR MaLR 0 364 1 262 180 0 0 chr3 182680569 182680619 -44843959 + Charlie8 DNA MER1_type 1357 1406 -1011 2328 99 0 0 chr3 182681148 182681441 -44843137 - AluSg SINE Alu -17 293 1 435 169 20 115 chr3 182681647 182681795 -44842783 + MER91C DNA MER1_type 1 134 -6 720 192 62 28 chr3 182683401 182683578 -44841000 + MIR SINE MIR 13 195 -67 361 250 48 0 chr3 182683989 182684073 -44840505 - L2 LINE L2 -214 3058 2971 222 280 246 5 chr3 182684141 182684352 -44840226 - L2 LINE L2 -580 2734 2473 265 73 0 36 chr3 182686922 182686977 -44837601 + (CGGGG)n Simple_repeat Simple_repeat 1 53 0 180 0 0 0 chr3 182687474 182687494 -44837084 + (CAG)n Simple_repeat Simple_repeat 3 22 0 225 108 0 0 chr3 182687652 182687689 -44836889 + (GGA)n Simple_repeat Simple_repeat 1 37 0 588 255 157 27 chr3 182690622 182690959 -44833619 + L2 LINE L2 2909 3289 -24 198 0 0 0 chr3 182690963 182690985 -44833593 + (TGAA)n Simple_repeat Simple_repeat 1 22 0 393 179 64 0 chr3 182691008 182691086 -44833492 - MIR3 SINE MIR -48 160 78 2416 70 0 0 chr3 182692459 182692767 -44831811 + AluSq SINE Alu 1 308 0 1960 218 54 52 chr3 182692775 182693259 -44831319 - L1ME2 LINE L1 -9 6155 5668 2057 134 3 0 chr3 182693259 182693550 -44831028 - AluSq SINE Alu -21 292 1 1960 218 54 52 chr3 182693550 182693681 -44830897 - L1ME2 LINE L1 -496 5668 5539 21 0 0 0 chr3 182694684 182694705 -44829873 + AT_rich Low_complexity Low_complexity 1 21 0 1836 118 46 11 chr3 182695154 182695434 -44829144 - AluSx SINE Alu -22 290 1 2452 88 0 0 chr3 182695727 182696032 -44828546 - AluSx SINE Alu -7 305 1 213 216 45 57 chr3 182696290 182696378 -44828200 - MIR3 SINE MIR -5 203 117 23 0 0 0 chr3 182697364 182697387 -44827191 + AT_rich Low_complexity Low_complexity 1 23 0 189 0 0 0 chr3 182699325 182699346 -44825232 + (T)n Simple_repeat Simple_repeat 1 21 0 330 208 0 13 chr3 182699346 182699423 -44825155 - LTR30 LTR ERV1 -101 621 546 526 299 62 43 chr3 182700066 182700390 -44824188 - MER102b DNA MER1_type 0 341 12 343 245 51 10 chr3 182700403 182700501 -44824077 - MIR3 SINE MIR -50 158 57 32 0 0 0 chr3 182700790 182700822 -44823756 + AT_rich Low_complexity Low_complexity 1 32 0 2331 59 10 40 chr3 182701186 182701489 -44823089 - AluY SINE Alu -17 294 1 830 168 25 49 chr3 182701514 182701717 -44822861 - L1MD3 LINE L1 0 7995 7798 1883 147 3 17 chr3 182702582 182702881 -44821697 + AluSx SINE Alu 1 295 -17 249 232 0 0 chr3 182703688 182703744 -44820834 - MIR3 SINE MIR -9 199 144 2276 118 0 0 chr3 182704375 182704672 -44819906 - AluSq SINE Alu -16 297 1 191 292 0 0 chr3 182704784 182704832 -44819746 - L2 LINE L2 -1 3312 3265 211 235 0 20 chr3 182705444 182705495 -44819083 - MIR SINE MIR -96 166 117 2199 106 14 0 chr3 182707856 182708149 -44816429 - AluSx SINE Alu -15 297 1 419 77 0 15 chr3 182709863 182709928 -44814650 + (TG)n Simple_repeat Simple_repeat 2 65 0 268 268 98 24 chr3 182710309 182710391 -44814187 - MIR SINE MIR -128 134 47 586 192 0 0 chr3 182710949 182711048 -44813530 + AluSg/x SINE Alu 195 293 -19 4607 189 51 16 chr3 182711053 182711084 -44813494 - L1MB7 LINE L1 -22 6162 6134 2361 89 0 3 chr3 182711084 182711388 -44813190 - AluSg SINE Alu -7 303 1 4607 189 51 16 chr3 182711388 182713003 -44811575 - L1MB7 LINE L1 -50 6134 4463 2316 109 3 0 chr3 182713003 182713314 -44811264 - AluSx SINE Alu 0 312 1 4607 189 51 16 chr3 182713314 182713352 -44811226 - L1MB7 LINE L1 -1721 4463 4428 1354 167 179 75 chr3 182713805 182714219 -44810359 - MSTB2 LTR MaLR 0 457 1 189 357 38 47 chr3 182714278 182714440 -44810138 - MIR SINE MIR -50 212 51 1702 163 9 41 chr3 182714440 182714759 -44809819 + AluJo SINE Alu 2 310 -2 189 357 38 47 chr3 182714759 182714809 -44809769 - MIR SINE MIR -211 51 2 983 287 44 10 chr3 182715071 182715458 -44809120 + LTR16A LTR ERVL 32 431 -19 309 266 71 18 chr3 182715953 182716066 -44808512 + MER103 DNA DNA 3 121 -45 369 188 24 24 chr3 182716520 182716605 -44807973 + MER117 DNA MER1_type 61 145 -52 2037 132 7 0 chr3 182716981 182717290 -44807288 - AluSx SINE Alu 0 311 1 1558 175 28 21 chr3 182717329 182717614 -44806964 - AluJo SINE Alu -25 287 1 527 319 123 70 chr3 182717761 182718191 -44806387 + L2 LINE L2 2819 3271 -1 1930 193 100 93 chr3 182719934 182720494 -44804084 - MLT1F1 LTR MaLR 0 567 4 714 226 162 8 chr3 182721675 182721909 -44802669 - L2 LINE L2 -916 2398 2129 1027 166 91 0 chr3 182721918 182722093 -44802485 + MER3 DNA MER1_type 2 192 -17 467 221 0 49 chr3 182722240 182722362 -44802216 - L2 LINE L2 -1441 1873 1758 1028 108 0 0 chr3 182722362 182722491 -44802087 - AluSq/x SINE Alu -184 129 1 203 292 0 0 chr3 182722603 182722651 -44801927 - L2 LINE L2 -1 3312 3265 225 235 0 20 chr3 182723263 182723314 -44801264 - MIR SINE MIR -96 166 117 2174 106 14 0 chr3 182725675 182725968 -44798610 - AluSx SINE Alu -15 297 1 419 77 0 15 chr3 182727684 182727749 -44796829 + (TG)n Simple_repeat Simple_repeat 2 65 0 302 245 82 71 chr3 182728112 182728210 -44796368 - MIR SINE MIR -117 145 47 277 219 79 53 chr3 182729661 182729775 -44794803 - L2 LINE L2 -1 3312 3196 366 89 18 0 chr3 182729802 182729858 -44794720 - MLT2D LTR ERVL 0 520 464 1425 148 40 0 chr3 182729881 182730104 -44794474 + MER46A DNA MER2_type 5 236 0 1864 175 61 3 chr3 182730156 182730498 -44794080 - MLT2D LTR ERVL -48 366 5 971 161 52 6 chr3 182730533 182730707 -44793871 - MER5A DNA MER1_type -1 188 7 2013 117 28 3 chr3 182731424 182731715 -44792863 + AluSx SINE Alu 1 298 -14 620 271 81 58 chr3 182732232 182732678 -44791900 - LTR33A LTR ERVL -2 521 66 306 239 221 52 chr3 182733292 182733505 -44791073 + MIR SINE MIR 14 262 0 263 309 37 90 chr3 182734117 182734255 -44790323 - MER5B DNA MER1_type 0 178 51 189 94 0 0 chr3 182734255 182734287 -44790291 + (TCTCTG)n Simple_repeat Simple_repeat 2 33 0 263 309 37 90 chr3 182734287 182734336 -44790242 - MER5B DNA MER1_type -127 51 1 2556 177 83 13 chr3 182734425 182734591 -44789987 - MLT1D LTR MaLR 0 505 352 2020 128 0 0 chr3 182734591 182734873 -44789705 - AluSx SINE Alu -30 282 1 2556 177 83 13 chr3 182734873 182735176 -44789402 - MLT1D LTR MaLR -153 352 3 858 131 21 21 chr3 182735631 182735776 -44788802 + Charlie4 DNA MER1_type 1816 1960 -1 353 244 0 118 chr3 182735877 182735996 -44788582 - MER5B DNA MER1_type 0 178 74 606 180 49 16 chr3 182736303 182736425 -44788153 + MIR SINE MIR 13 138 -124 376 230 92 9 chr3 182736456 182736582 -44787996 - MIR SINE MIR -63 145 33 351 295 105 37 chr3 182736693 182736883 -44787695 - L2 LINE L2 -234 3038 2836 344 253 13 0 chr3 182736944 182737019 -44787559 + MER5A DNA MER1_type 66 141 -48 1525 158 102 17 chr3 182738554 182738593 -44785985 - LTR54 LTR ERV1 -4 494 460 1499 89 0 5 chr3 182738593 182738784 -44785794 - AluYa5 SINE Alu -17 294 105 1525 158 102 17 chr3 182738784 182739185 -44785393 - LTR54 LTR ERV1 -38 460 1 636 275 30 7 chr3 182739201 182739391 -44785187 + MIR SINE MIR 1 190 -27 2250 101 0 7 chr3 182739491 182739815 -44784763 + AluSx SINE Alu 1 312 0 327 209 0 45 chr3 182740350 182740417 -44784161 + MIR SINE MIR 87 150 -58 300 313 46 78 chr3 182740709 182741016 -44783562 - L2 LINE L2 -428 2886 2590 417 254 91 0 chr3 182741063 182741173 -44783405 - L2 LINE L2 0 3313 3194 249 130 22 0 chr3 182741934 182741980 -44782598 - Charlie8 DNA MER1_type -2295 122 76 199 344 49 57 chr3 182742981 182743103 -44781475 - MIR SINE MIR -68 140 20 424 273 93 27 chr3 182743162 182743312 -44781266 - MIR SINE MIR -44 218 59 1670 239 48 56 chr3 182743751 182744186 -44780392 - MLT1J LTR MaLR -1 510 78 213 39 0 0 chr3 182744186 182744212 -44780366 + (TG)n Simple_repeat Simple_repeat 2 27 0 1670 239 48 56 chr3 182744212 182744278 -44780300 - MLT1J LTR MaLR -433 78 13 441 251 170 23 chr3 182744858 182745029 -44779549 - MIR SINE MIR -57 205 10 271 263 40 20 chr3 182746008 182746107 -44778471 - MLT1L LTR MaLR -348 267 167 2326 83 3 3 chr3 182746824 182747124 -44777454 - AluSx SINE Alu -12 300 1 506 307 78 5 chr3 182748829 182749021 -44775557 - MIR SINE MIR -50 212 7 428 286 109 26 chr3 182749298 182749490 -44775088 + MLT1J LTR MaLR 6 213 -298 486 169 0 0 chr3 182749508 182749585 -44774993 - U2 snRNA snRNA -111 77 1 277 278 35 62 chr3 182749649 182749793 -44774785 + MLT1J LTR MaLR 300 439 -72 311 102 41 0 chr3 182749797 182749846 -44774732 + AluSp SINE Alu 107 157 -146 957 259 174 44 chr3 182750070 182750592 -44773986 - L2 LINE L2 -2689 625 36 634 203 145 0 chr3 182751098 182751236 -44773342 + MER45A DNA AcHobo 4 161 -17 696 322 115 35 chr3 182752961 182753503 -44771075 - L2 LINE L2 -1 3271 2694 2668 24 0 0 chr3 182754891 182755185 -44769393 + AluYb8 SINE Alu 21 314 -4 248 327 29 0 chr3 182755523 182755627 -44768951 - MIR SINE MIR -64 144 38 276 185 0 0 chr3 182755709 182755763 -44768815 + (TA)n Simple_repeat Simple_repeat 1 54 0 247 290 10 20 chr3 182757312 182757412 -44767166 + Charlie3 DNA MER1_type 2308 2406 -304 323 314 93 85 chr3 182758536 182758693 -44765885 + L2 LINE L2 3009 3170 -102 2157 125 0 3 chr3 182758693 182758998 -44765580 - AluSx SINE Alu -8 304 1 323 314 93 85 chr3 182758998 182759098 -44765480 + L2 LINE L2 3170 3268 -4 22 0 0 0 chr3 182761084 182761106 -44763472 + AT_rich Low_complexity Low_complexity 1 22 0 431 214 51 20 chr3 182761999 182762097 -44762481 - MER5A DNA MER1_type -80 109 9 240 261 22 11 chr3 182762501 182762593 -44761985 + (TA)n Simple_repeat Simple_repeat 2 94 0 308 289 93 0 chr3 182763214 182763311 -44761267 - L2 LINE L2 -4 3309 3204 2638 103 78 37 chr3 182763549 182763588 -44760990 - MSTA LTR MaLR 0 428 392 2172 116 41 0 chr3 182763588 182763882 -44760696 + AluSq SINE Alu 1 306 -7 2638 103 78 37 chr3 182763882 182764251 -44760327 - MSTA LTR MaLR -36 392 3 1583 181 3 55 chr3 182764312 182764621 -44759957 + AluJb SINE Alu 5 297 -15 404 247 63 44 chr3 182764723 182764881 -44759697 + MIR SINE MIR 100 260 -2 240 234 72 62 chr3 182768782 182768991 -44755587 - Charlie7 DNA MER1_type -1 2611 2401 259 307 71 21 chr3 182769507 182769647 -44754931 - L2 LINE L2 -2 3270 3124 204 314 162 0 chr3 182770332 182770437 -44754141 + MIR3 SINE MIR 44 165 -43 1166 179 44 0 chr3 182770755 182770984 -44753594 - L1MB7 LINE L1 -19 6165 5927 487 268 74 21 chr3 182771049 182771239 -44753339 - MIR SINE MIR 0 262 63 27 0 0 0 chr3 182771910 182771937 -44752641 + AT_rich Low_complexity Low_complexity 1 27 0 592 195 136 30 chr3 182773102 182773271 -44751307 + MER5A DNA MER1_type 3 189 0 342 115 0 0 chr3 182773293 182773354 -44751224 + (TG)n Simple_repeat Simple_repeat 1 61 0 231 259 19 0 chr3 182773677 182773731 -44750847 + MER5A DNA MER1_type 41 95 -94 2880 159 49 8 chr3 182774881 182775409 -44749169 - MER44D DNA MER2_type 0 605 1 1834 132 58 0 chr3 182776306 182776617 -44747961 + MER44D DNA MER2_type 11 609 0 1678 196 23 31 chr3 182776619 182777007 -44747571 - MLT1D LTR MaLR -4 501 117 294 277 45 39 chr3 182777106 182777261 -44747317 + L2 LINE L2 2139 2294 -1020 280 278 68 105 chr3 182777647 182777809 -44746769 - L2 LINE L2 0 3313 3158 2187 118 49 6 chr3 182778118 182778464 -44746114 + MER46B DNA MER2_type 1 236 0 425 258 69 6 chr3 182779134 182779293 -44745285 - L1ME2 LINE L1 -10 6154 5986 2115 133 42 20 chr3 182779645 182779999 -44744579 - MLT1A1 LTR MaLR -1 364 3 343 333 17 8 chr3 182780081 182780201 -44744377 + MIR3 SINE MIR 81 201 -7 1944 121 24 24 chr3 182780947 182781245 -44743333 + AluSx SINE Alu 1 298 -14 2371 68 0 43 chr3 182782115 182782440 -44742138 + AluY SINE Alu 1 311 0 303 28 0 0 chr3 182783129 182783165 -44741413 + (T)n Simple_repeat Simple_repeat 1 36 0 299 176 44 15 chr3 182785133 182785201 -44739377 - MER116 DNA Mariner 0 80 11 1928 103 7 11 chr3 182786096 182786368 -44738210 - AluSx SINE Alu -27 285 15 424 272 110 17 chr3 182786373 182786546 -44738032 + L2 LINE L2 3081 3269 -44 2386 71 0 10 chr3 182786608 182786916 -44737662 + AluY SINE Alu 1 305 -6 197 206 79 48 chr3 182787012 182787075 -44737503 + MIR SINE MIR 82 146 -116 238 241 0 0 chr3 182787252 182787310 -44737268 - L1M4 LINE L1 -1781 4365 4308 248 323 152 6 chr3 182790530 182790694 -44733884 + MIR3 SINE MIR 2 189 -19 196 267 40 27 chr3 182790702 182790777 -44733801 - MIR SINE MIR -26 236 161 1043 254 80 74 chr3 182790933 182791316 -44733262 + L1ME4a LINE L1 5314 5713 -408 2336 99 0 0 chr3 182791316 182791609 -44732969 + AluSc SINE Alu 1 293 -16 1043 254 80 74 chr3 182791609 182791949 -44732629 + L1ME4a LINE L1 5713 6049 -72 205 176 0 0 chr3 182791979 182792013 -44732565 + GA-rich Low_complexity Low_complexity 2 35 0 405 0 0 0 chr3 182792728 182792773 -44731805 + (CA)n Simple_repeat Simple_repeat 2 46 0 674 204 24 24 chr3 182793056 182793223 -44731355 + MER3 DNA MER1_type 38 204 -5 269 245 0 0 chr3 182793853 182793906 -44730672 + L2 LINE L2 3143 3195 -77 21 0 0 0 chr3 182795122 182795143 -44729435 + AT_rich Low_complexity Low_complexity 1 21 0 279 273 242 0 chr3 182795164 182795263 -44729315 - MER5A DNA MER1_type 0 189 67 375 339 36 30 chr3 182795861 182796029 -44728549 + MIR3 SINE MIR 17 185 -23 293 195 16 16 chr3 182796141 182796264 -44728314 + (TA)n Simple_repeat Simple_repeat 2 124 0 348 232 21 53 chr3 182796306 182796401 -44728177 + L1MC4 LINE L1 6614 6705 -1337 674 216 118 12 chr3 182796418 182796673 -44727905 - HAL1 LINE L1 -109 2398 2117 282 57 0 0 chr3 182796673 182796708 -44727870 + U2 snRNA snRNA 1 35 -153 1150 287 66 32 chr3 182796817 182798736 -44725842 - L1ME LINE L1 -360 5802 3763 716 306 29 37 chr3 182798941 182799458 -44725120 - L1M4 LINE L1 -1871 4275 3763 23 68 0 0 chr3 182799481 182799525 -44725053 + AT_rich Low_complexity Low_complexity 1 44 0 464 287 69 29 chr3 182799528 182799946 -44724632 - L1M4 LINE L1 -2385 3761 3327 679 238 60 101 chr3 182800086 182800384 -44724194 + L2 LINE L2 3028 3313 0 536 279 105 41 chr3 182800385 182800700 -44723878 - HAL1 LINE L1 -1743 764 430 480 271 115 65 chr3 182800742 182801081 -44723497 - HAL1 LINE L1 -2149 358 3 189 0 0 0 chr3 182803856 182803877 -44720701 + (A)n Simple_repeat Simple_repeat 1 21 0 735 179 0 0 chr3 182804650 182804789 -44719789 + FLAM_A SINE Alu 1 139 0 768 215 126 5 chr3 182805140 182805354 -44719224 + MIR SINE MIR 2 241 -21 874 207 37 4 chr3 182805390 182805632 -44718946 - HsTC2 DNA Tc2 -5 1893 1644 308 237 0 0 chr3 182805709 182805785 -44718793 - HsTC2 DNA Tc2 -577 1321 1246 2274 103 0 3 chr3 182805905 182806206 -44718372 + AluSq SINE Alu 1 300 -13 2190 100 0 13 chr3 182807034 182807333 -44717245 + AluSx SINE Alu 1 295 -17 2791 16 0 0 chr3 182807335 182807685 -44716893 + AluYa5 SINE Alu 1 350 0 308 252 140 9 chr3 182807775 182807882 -44716696 - L1ME4a LINE L1 -131 5990 5870 259 265 20 20 chr3 182807982 182808080 -44716498 - L1ME4a LINE L1 -1992 5816 5719 222 192 0 0 chr3 182808084 182808136 -44716442 + T-rich Low_complexity Low_complexity 1 52 0 358 215 222 7 chr3 182808213 182808348 -44716230 + MIR SINE MIR 84 247 -15 232 321 0 37 chr3 182809215 182809296 -44715282 + MIR3 SINE MIR 126 203 -5 512 211 20 121 chr3 182809372 182809571 -44715007 - MER102b DNA MER1_type -1 340 162 219 88 0 0 chr3 182809571 182809605 -44714973 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 874 220 214 44 chr3 182810651 182811015 -44713563 - MLT1H LTR MaLR -110 439 14 495 82 0 0 chr3 182813174 182813247 -44711331 + (TG)n Simple_repeat Simple_repeat 2 74 0 223 307 0 27 chr3 182813252 182813327 -44711251 + L3 LINE CR1 1328 1400 -177 274 236 182 36 chr3 182813484 182813649 -44710929 - MIR SINE MIR -40 222 34 210 309 0 0 chr3 182814752 182814807 -44709771 - L2 LINE L2 -8 3264 3210 1273 129 36 5 chr3 182815404 182815597 -44708981 + AluJo SINE Alu 84 282 -30 2105 111 123 0 chr3 182815610 182815934 -44708644 - THE1B LTR MaLR 0 364 1 706 268 129 5 chr3 182817109 182817318 -44707260 + MIR SINE MIR 1 235 -27 181 261 22 0 chr3 182818003 182818049 -44706529 + L2 LINE L2 3224 3270 -43 200 299 52 90 chr3 182818177 182818311 -44706267 + L3 LINE CR1 1286 1414 -163 1147 181 123 53 chr3 182818474 182818657 -44705921 + L1MC5 LINE L1 7499 7668 -293 2575 61 3 0 chr3 182818657 182818967 -44705611 + AluY SINE Alu 1 311 0 1147 181 123 53 chr3 182818967 182819182 -44705396 + L1MC5 LINE L1 7668 7925 -36 2194 113 0 0 chr3 182819934 182820226 -44704352 + AluY SINE Alu 3 294 -17 315 104 0 0 chr3 182820226 182820274 -44704304 + (GGGA)n Simple_repeat Simple_repeat 1 48 0 25 0 0 0 chr3 182822351 182822376 -44702202 + AT_rich Low_complexity Low_complexity 1 25 0 760 239 11 11 chr3 182822904 182823080 -44701498 - MER5B DNA MER1_type 0 178 3 475 248 72 46 chr3 182823401 182823554 -44701024 + L2 LINE L2 3104 3260 -12 2199 115 0 0 chr3 182824526 182824839 -44699739 - AluSq SINE Alu 0 313 1 21 0 0 0 chr3 182825768 182825789 -44698789 + AT_rich Low_complexity Low_complexity 1 21 0 235 162 132 73 chr3 182827073 182827141 -44697437 + L1ME LINE L1 353 424 -5646 855 195 85 0 chr3 182827245 182827409 -44697169 - MER5B DNA MER1_type 0 178 1 339 323 185 5 chr3 182828238 182828433 -44696145 + MIR SINE MIR 20 249 -13 439 273 111 40 chr3 182828661 182828775 -44695803 - L1MC4a LINE L1 -297 5824 5818 2382 98 0 0 chr3 182828775 182829080 -44695498 - AluSx SINE Alu -7 305 1 439 273 111 40 chr3 182829080 182829244 -44695334 - L1MC4a LINE L1 -303 5818 5667 207 0 0 0 chr3 182829422 182829445 -44695133 + (TC)n Simple_repeat Simple_repeat 1 23 0 * 315 0 0 0 chr3 182829444 182829479 -44695099 + (CA)n Simple_repeat Simple_repeat 1 35 0 554 301 116 51 chr3 182829976 182830331 -44694247 + MLT1J2 LTR MaLR 73 450 0 190 300 117 0 chr3 182830366 182830426 -44694152 - MIR SINE MIR -194 68 2 1691 170 24 20 chr3 182832395 182832689 -44691889 - AluJo SINE Alu -14 298 4 2151 158 27 12 chr3 182833002 182833408 -44691170 - L1MA3 LINE L1 0 6305 5894 327 277 8 69 chr3 182834274 182834404 -44690174 - MER102a DNA MER1_type 0 330 209 228 217 58 0 chr3 182834885 182834954 -44689624 + (TTTA)n Simple_repeat Simple_repeat 1 73 0 741 258 151 56 chr3 182835286 182835677 -44688901 + MLT1K LTR MaLR 155 582 -6 314 332 146 56 chr3 182835679 182836273 -44688305 + L2 LINE L2 2631 3272 0 243 259 0 0 chr3 182837265 182837319 -44687259 - Charlie2 DNA MER1_type -1 2861 2808 2161 146 0 0 chr3 182837319 182837628 -44686950 + AluSx SINE Alu 2 310 -2 826 241 0 0 chr3 182837648 182837810 -44686768 + FRAM SINE Alu 1 162 -14 2621 214 57 31 chr3 182837821 182838617 -44685961 - Charlie2 DNA MER1_type -64 2798 1983 404 163 0 65 chr3 182838620 182838712 -44685866 - AluJ/FRAM SINE Alu -9 303 218 740 256 54 50 chr3 182838762 182839039 -44685539 - Charlie2 DNA MER1_type -2503 279 2 309 272 109 11 chr3 182839127 182839219 -44685359 - L2 LINE L2 -37 3276 3176 285 222 0 0 chr3 182839361 182839424 -44685154 + L2 LINE L2 3243 3305 -8 423 336 7 14 chr3 182839438 182839578 -44685000 - MIR3 SINE MIR -3 205 67 425 377 108 8 chr3 182840406 182840889 -44683689 + L2 LINE L2 2222 2752 -562 209 265 128 51 chr3 182840912 182841029 -44683549 + MIR SINE MIR 6 131 -131 334 300 67 0 chr3 182841072 182841192 -44683386 - L1MC4a LINE L1 -1940 5868 5741 404 267 38 0 chr3 182841209 182841314 -44683264 - L1MC4a LINE L1 -478 5643 5535 1705 170 26 16 chr3 182841352 182841658 -44682920 - AluJo SINE Alu -3 309 1 302 282 51 0 chr3 182841670 182841748 -44682830 + MIR SINE MIR 53 134 -128 670 229 18 12 chr3 182842272 182842442 -44682136 - L1MB7 LINE L1 -8 6176 6006 446 314 22 26 chr3 182842836 182843062 -44681516 - L1M4 LINE L1 -6299 243 19 1959 114 37 0 chr3 182843559 182843855 -44680723 + AluSx SINE Alu 1 306 0 412 302 86 63 chr3 182843934 182844189 -44680389 + MIR SINE MIR 2 262 0 738 279 111 9 chr3 182845004 182845230 -44679348 + MIR SINE MIR 9 257 -5 229 325 13 0 chr3 182846118 182846195 -44678383 - MLT1K LTR MaLR -356 232 155 363 254 146 0 chr3 182846222 182846332 -44678246 - L2 LINE L2 -1073 2241 2116 36 62 0 0 chr3 182846820 182846884 -44677694 + AT_rich Low_complexity Low_complexity 1 64 0 37 39 0 0 chr3 182846973 182847024 -44677554 + AT_rich Low_complexity Low_complexity 1 51 0 2084 177 43 46 chr3 182847092 182847142 -44677436 + L1MB8 LINE L1 5221 5270 -908 4134 99 60 25 chr3 182847142 182847755 -44676823 - LTR24C LTR ERV1 0 635 1 2084 177 43 46 chr3 182847755 182848357 -44676221 + L1MB8 LINE L1 5270 5825 -353 * 2352 185 71 101 chr3 182848355 182848803 -44675775 + L1MB4 LINE L1 5075 5535 -645 287 192 0 0 chr3 182848803 182848855 -44675723 - AluJb SINE Alu -169 133 82 2352 185 71 101 chr3 182848855 182849399 -44675179 + L1MB4 LINE L1 5535 6157 -23 1824 185 21 5 chr3 182849401 182849774 -44674804 + L1MB8 LINE L1 5799 6177 -1 236 289 0 40 chr3 182849814 182849890 -44674688 + GA-rich Low_complexity Low_complexity 3 75 0 429 221 35 26 chr3 182850011 182850124 -44674454 + MLT1D LTR MaLR 1 114 -391 1633 225 27 24 chr3 182850268 182850641 -44673937 - MLT1A2 LTR MaLR 0 374 1 224 288 76 0 chr3 182850733 182850799 -44673779 + L2 LINE L2 3241 3311 -2 492 223 60 145 chr3 182851116 182851398 -44673180 - MER102b DNA MER1_type 0 341 84 331 229 0 36 chr3 182851887 182851970 -44672608 + MIR3 SINE MIR 104 183 -25 386 273 118 68 chr3 182852321 182852488 -44672090 - L2 LINE L2 0 3313 3156 2131 115 0 10 chr3 182852488 182852784 -44671794 + AluSq SINE Alu 1 293 -20 386 273 118 68 chr3 182852784 182853176 -44671402 - L2 LINE L2 -157 3156 2711 1503 184 53 0 chr3 182853176 182853442 -44671136 + AluJo SINE Alu 19 298 -14 386 273 118 68 chr3 182853442 182853475 -44671103 - L2 LINE L2 -602 2711 2681 180 309 0 0 chr3 182853487 182853529 -44671049 - MIR SINE MIR -199 63 22 583 317 143 7 chr3 182853575 182853875 -44670703 - L2 LINE L2 -609 2705 2365 556 339 84 45 chr3 182854145 182854526 -44670052 + L2 LINE L2 2877 3272 0 194 256 85 24 chr3 182855329 182855411 -44669167 - MIR SINE MIR -168 94 8 1505 192 3 46 chr3 182855729 182856031 -44668547 + AluJo SINE Alu 1 289 -23 353 301 14 62 chr3 182856045 182856191 -44668387 - L2 LINE L2 -11 3261 3123 214 250 0 0 chr3 182856152 182856196 -44668382 - MIR SINE MIR -179 83 40 * 285 232 0 0 chr3 182856211 182856267 -44668311 - MIR3 SINE MIR -31 177 122 528 281 7 22 chr3 182856322 182856461 -44668117 - MIR SINE MIR -125 137 1 691 312 120 60 chr3 182857283 182857600 -44666978 - L2 LINE L2 -6 3266 2931 1606 149 82 4 chr3 182857851 182858132 -44666446 + AluSx SINE Alu 1 303 -9 212 154 0 0 chr3 182858154 182858193 -44666385 + L2 LINE L2 3027 3065 -248 1870 171 7 7 chr3 182859277 182859586 -44664992 - AluJo SINE Alu -3 309 1 188 312 55 28 chr3 182859824 182859933 -44664645 + L3b LINE CR1 1228 1339 -244 2072 135 49 15 chr3 182859956 182860281 -44664297 - MER1B DNA MER1_type -1 336 1 263 161 54 0 chr3 182861199 182861255 -44663323 + L2 LINE L2 3255 3313 0 301 232 0 0 chr3 182861270 182861326 -44663252 + MER103 DNA DNA 63 118 -48 22 25 0 25 chr3 182861507 182861519 -44663059 + AT_rich Low_complexity Low_complexity 1 12 -27 2251 103 0 7 chr3 182861519 182861810 -44662768 - AluSx SINE Alu -23 289 1 22 25 0 25 chr3 182861810 182861837 -44662741 + AT_rich Low_complexity Low_complexity 12 39 0 2935 93 3 3 chr3 182862071 182862435 -44662143 - THE1B LTR MaLR 0 364 1 10413 91 28 49 chr3 182862446 182864022 -44660556 - THE1B-int LTR MaLR -37 1543 1 2598 115 28 6 chr3 182864022 182864378 -44660200 - THE1B LTR MaLR 0 364 1 2163 119 0 10 chr3 182864788 182865083 -44659495 - AluSg SINE Alu -17 293 2 346 0 0 0 chr3 182865772 182865812 -44658766 + L1PA2 LINE L1 6110 6149 -6 360 0 0 0 chr3 182866393 182866433 -44658145 + (CA)n Simple_repeat Simple_repeat 2 41 0 247 377 85 0 chr3 182867252 182867382 -44657196 + L2 LINE L2 3122 3262 -10 238 321 54 54 chr3 182867361 182867473 -44657105 - L2 LINE L2 -7 3265 3154 * 1613 91 14 0 chr3 182867986 182868196 -44656382 + AluSq SINE Alu 1 213 -100 606 224 83 26 chr3 182868598 182868754 -44655824 + FRAM SINE Alu 11 175 -1 193 322 79 40 chr3 182869613 182869765 -44654813 - MIR SINE MIR -55 207 50 2188 103 3 31 chr3 182870523 182870844 -44653734 - AluSx SINE Alu 0 312 1 3555 199 50 79 chr3 182871292 182871883 -44652695 - MER21B LTR ERV1 -1 862 304 1634 108 39 118 chr3 182871883 182872215 -44652363 - AluYb8 SINE Alu -12 306 1 3555 199 50 79 chr3 182872215 182872511 -44652067 - MER21B LTR ERV1 -559 304 1 2180 115 0 0 chr3 182872953 182873241 -44651337 + AluSx SINE Alu 1 288 -24 2027 144 10 10 chr3 182873285 182873598 -44650980 - AluSq SINE Alu 0 313 1 1737 124 0 0 chr3 182873604 182873838 -44650740 - AluSx SINE Alu -20 292 59 1269 273 97 21 chr3 182874661 182875342 -44649236 - L1MC4a LINE L1 -747 5399 5198 290 296 70 42 chr3 182875945 182876087 -44648491 - MIR3 SINE MIR -58 150 5 510 114 0 0 chr3 182876883 182876962 -44647616 + (GGGAA)n Simple_repeat Simple_repeat 4 82 0 380 223 51 57 chr3 182877003 182877160 -44647418 - MER112 DNA MER1_type -95 165 10 221 366 134 21 chr3 182877493 182877687 -44646891 + L2 LINE L2 3057 3272 0 715 134 62 56 chr3 182878541 182878760 -44645818 - LTR48 LTR ERV1 0 727 550 426 121 0 0 chr3 182878756 182878814 -44645764 - LTR48B LTR ERV1 -245 399 342 * 1749 126 191 23 chr3 182878808 182879020 -44645558 - LTR48 LTR ERV1 -334 453 278 2215 107 7 3 chr3 182879020 182879318 -44645260 - AluSx SINE Alu -13 299 1 1749 126 191 23 chr3 182879318 182879493 -44645085 - LTR48 LTR ERV1 -509 278 1 195 305 146 0 chr3 182880252 182880334 -44644244 - MIR SINE MIR -2 260 167 1132 271 183 19 chr3 182880654 182881135 -44643443 + MLT1G LTR MaLR 1 519 -71 353 359 0 17 chr3 182881176 182881293 -44643285 - MIR SINE MIR -146 116 2 1039 239 108 63 chr3 182881385 182881766 -44642812 - MLT1J LTR MaLR -113 398 1 1906 92 22 79 chr3 182883207 182883523 -44641055 + MSTC LTR MaLR 1 298 -130 1002 172 98 29 chr3 182883646 182883850 -44640728 + MLT1F1 LTR MaLR 5 222 -345 1557 130 58 8 chr3 182883959 182884220 -44640358 + L1MC1 LINE L1 5888 6161 -172 402 286 0 9 chr3 182884765 182884870 -44639708 + MIR SINE MIR 159 262 0 333 314 63 40 chr3 182885730 182885905 -44638673 - L2 LINE L2 -2 3270 3092 856 326 96 15 chr3 182887351 182887820 -44636758 - L2 LINE L2 0 3313 2807 1805 129 77 19 chr3 182887897 182888207 -44636371 + MLT2B1 LTR ERVL 1 328 -192 2124 161 18 73 chr3 182889043 182889479 -44635099 - MLT2B2 LTR ERVL -103 412 1 419 184 13 0 chr3 182889522 182889598 -44634980 - MLT1F LTR MaLR -464 78 2 238 293 75 0 chr3 182889620 182889726 -44634852 + MLT1J LTR MaLR 386 499 -12 208 278 14 49 chr3 182890405 182890549 -44634029 + T-rich Low_complexity Low_complexity 2 140 0 970 192 17 113 chr3 182890930 182891170 -44633408 - MER20 DNA MER1_type 0 219 3 2014 88 0 4 chr3 182891294 182891580 -44632998 + AluY SINE Alu 22 306 0 569 279 116 5 chr3 182891904 182892094 -44632484 + MER46C DNA MER2_type 2 212 -126 1898 178 0 9 chr3 182892159 182892474 -44632104 - AluJb SINE Alu 0 312 1 854 309 66 38 chr3 182892519 182893449 -44631129 - L1ME3 LINE L1 -260 5902 4944 647 183 96 9 chr3 182893483 182893598 -44630980 - FLAM_C SINE Alu -17 126 2 389 311 43 61 chr3 182893679 182893839 -44630739 - L1ME3 LINE L1 -1303 4843 4689 1786 159 3 24 chr3 182893839 182894135 -44630443 + AluJo SINE Alu 1 290 -22 389 311 43 61 chr3 182894135 182894251 -44630327 - L1ME3 LINE L1 -1457 4689 4572 760 214 117 0 chr3 182894358 182894554 -44630024 - MIR SINE MIR -36 226 8 533 295 66 26 chr3 182894575 182894877 -44629701 - L1ME3 LINE L1 -1734 4412 4099 210 213 106 0 chr3 182895276 182895323 -44629255 - MIR3 SINE MIR -22 186 135 212 324 36 22 chr3 182895506 182895645 -44628933 + L2 LINE L2 2302 2442 -872 250 252 69 76 chr3 182897163 182897294 -44627284 - MIR SINE MIR -70 192 63 2238 97 3 7 chr3 182897317 182897615 -44626963 + AluSx SINE Alu 1 297 -15 381 299 104 6 chr3 182899171 182899335 -44625243 + Charlie8 DNA MER1_type 17 196 -2221 1776 200 75 53 chr3 182899402 182899896 -44624682 - MLT1D LTR MaLR 0 505 1 218 336 129 27 chr3 182899936 182900231 -44624347 + L2 LINE L2 2918 3242 -30 390 133 200 6 chr3 182901061 182901193 -44623385 + L1MB2 LINE L1 6026 6171 0 417 39 0 0 chr3 182902392 182902443 -44622135 + (TG)n Simple_repeat Simple_repeat 1 51 0 410 296 53 26 chr3 182902532 182902684 -44621894 + MIR SINE MIR 28 146 -62 26 0 0 0 chr3 182903684 182903710 -44620868 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr3 182903740 182903770 -44620808 + AT_rich Low_complexity Low_complexity 1 30 0 2264 149 0 32 chr3 182904353 182904701 -44619877 + MER1B DNA MER1_type 1 337 0 1559 195 110 51 chr3 182904729 182905055 -44619523 - MSTD LTR MaLR 0 396 44 2348 94 3 0 chr3 182905055 182905353 -44619225 + AluSx SINE Alu 1 299 -13 1559 195 110 51 chr3 182905353 182905400 -44619178 - MSTD LTR MaLR -352 44 1 439 318 25 35 chr3 182906020 182906221 -44618357 + MIR SINE MIR 53 251 -11 289 324 9 9 chr3 182906277 182906388 -44618190 + MIR SINE MIR 104 214 -48 952 116 34 0 chr3 182906570 182906717 -44617861 - AluSq SINE Alu -17 296 145 431 259 33 28 chr3 182906822 182907018 -44617560 + L1M4c LINE L1 1224 1510 -4862 2312 109 58 5 chr3 182907021 182907363 -44617215 + THE1B LTR MaLR 1 420 -8 510 274 63 32 chr3 182907363 182907727 -44616851 + L1M4c LINE L1 1556 1881 -862 26 64 0 0 chr3 182907779 182907826 -44616752 + AT_rich Low_complexity Low_complexity 1 47 0 479 307 14 33 chr3 182908004 182908216 -44616362 + L1ME3A LINE L1 5963 6170 0 216 388 115 7 chr3 182908326 182908630 -44615948 + L2 LINE L2 477 813 -2501 624 70 0 35 chr3 182908730 182908816 -44615762 + L1MA1 LINE L1 6220 6302 0 254 331 45 30 chr3 182909057 182909190 -44615388 + MIR3 SINE MIR 23 157 -51 336 279 52 45 chr3 182910254 182910408 -44614170 + MIR SINE MIR 107 261 -1 1192 116 71 105 chr3 182910671 182910881 -44613697 - Tigger2 DNA MER2_type 0 2718 2502 1525 166 71 44 chr3 182910881 182911176 -44613402 + AluJo SINE Alu 1 303 -9 1192 116 71 105 chr3 182911176 182911199 -44613379 - Tigger2 DNA MER2_type -216 2502 2493 1713 183 30 3 chr3 182911199 182911494 -44613084 + AluJb SINE Alu 1 303 -9 1192 116 71 105 chr3 182911494 182911526 -44613052 - Tigger2 DNA MER2_type -225 2493 2461 3198 128 8 17 chr3 182911586 182912063 -44612515 - Tigger2 DNA MER2_type -1972 746 274 1022 119 0 0 chr3 182912065 182912208 -44612370 - FRAM SINE Alu -5 171 29 1396 151 40 0 chr3 182912217 182912468 -44612110 - Tigger2 DNA MER2_type -2457 261 1 461 229 102 0 chr3 182912930 182913048 -44611530 - MLT1L LTR MaLR -89 526 397 1978 283 102 31 chr3 182913113 182913551 -44611027 - HAL1 LINE L1 -214 2293 1887 1903 167 20 0 chr3 182913551 182913856 -44610722 - AluJo SINE Alu -1 311 1 1978 283 102 31 chr3 182913856 182914270 -44610308 - HAL1 LINE L1 -620 1887 1361 2305 101 0 3 chr3 182914270 182914577 -44610001 - AluSc SINE Alu -2 307 2 1978 283 102 31 chr3 182914577 182914696 -44609882 - HAL1 LINE L1 -1146 1361 1252 233 254 0 0 chr3 182914755 182914814 -44609764 - L1ME LINE L1 -738 5432 5374 285 266 83 35 chr3 182914943 182915112 -44609466 - L1ME4a LINE L1 -49 6332 6156 2089 112 0 14 chr3 182915128 182915454 -44609124 - AluSx SINE Alu 0 322 1 371 277 210 26 chr3 182915862 182915942 -44608636 + L2 LINE L2 2947 3011 -302 438 20 0 0 chr3 182915942 182915993 -44608585 + (TC)n Simple_repeat Simple_repeat 1 51 0 297 0 0 0 chr3 182915992 182916025 -44608553 + (CA)n Simple_repeat Simple_repeat 1 33 0 * 371 277 210 26 chr3 182915993 182916254 -44608324 + L2 LINE L2 3011 3313 0 910 269 134 21 chr3 182916808 182917332 -44607246 - L1ME4a LINE L1 -273 6108 5526 2149 119 0 3 chr3 182917432 182917772 -44606806 - AluSx SINE Alu 0 312 1 1533 212 7 3 chr3 182917783 182918071 -44606507 - AluJb SINE Alu -23 289 1 2201 87 49 7 chr3 182918368 182918655 -44605923 - AluSq SINE Alu -14 299 1 525 305 66 38 chr3 182919095 182919597 -44604981 - L1ME4a LINE L1 -1226 5180 4665 487 157 11 0 chr3 182919977 182920066 -44604512 - AluJb SINE Alu -35 277 188 1551 84 14 0 chr3 182920520 182920734 -44603844 + L1PA13 LINE L1 5947 6163 0 306 0 0 0 chr3 182921362 182921396 -44603182 + (CAA)n Simple_repeat Simple_repeat 3 36 0 194 340 33 7 chr3 182921397 182921550 -44603028 + L2 LINE L2 1550 1706 -1608 476 247 108 21 chr3 182921790 182921976 -44602602 - MIR SINE MIR -6 256 55 1608 244 80 42 chr3 182922058 182922772 -44601806 - L1MDb LINE L1 -4931 1475 775 185 329 14 0 chr3 182923318 182923388 -44601190 + L2 LINE L2 2395 2465 -849 900 48 96 0 chr3 182923507 182923632 -44600946 - MER85 DNA T2_type -2 137 1 263 308 0 0 chr3 182923773 182923838 -44600740 + MER21B LTR ERV1 184 248 -615 2236 208 63 8 chr3 182923870 182924365 -44600213 + MER21B LTR ERV1 341 862 -1 624 291 6 0 chr3 182924379 182924558 -44600020 - L1ME LINE L1 -402 5719 5540 587 251 92 31 chr3 182924617 182924812 -44599766 + MIR SINE MIR 48 254 -8 2543 48 0 0 chr3 182926394 182926684 -44597894 - AluY SINE Alu -17 294 5 526 281 12 23 chr3 182926915 182927086 -44597492 + MIR SINE MIR 18 186 -76 1248 260 100 60 chr3 182927528 182928503 -44596075 + L1MCc LINE L1 1279 2506 -4616 1296 164 42 66 chr3 182928508 182928795 -44595783 + AluJo SINE Alu 33 312 0 269 255 157 0 chr3 182929179 182929281 -44595297 - MIR SINE MIR -79 183 66 1183 136 21 47 chr3 182929493 182929772 -44594806 - AluSp SINE Alu -26 287 16 2222 106 3 3 chr3 182929812 182930113 -44594465 + AluSp SINE Alu 1 301 -12 1549 160 3 94 chr3 182931195 182931413 -44593165 - AluJb SINE Alu -11 301 122 2268 85 0 36 chr3 182931413 182931718 -44592860 + AluSg SINE Alu 1 294 -16 1549 160 3 94 chr3 182931718 182931830 -44592748 - AluJb SINE Alu -190 122 1 306 0 0 0 chr3 182932506 182932540 -44592038 + (CAAAC)n Simple_repeat Simple_repeat 3 36 0 1172 241 34 41 chr3 182932971 182933265 -44591313 + AluJo SINE Alu 1 292 -10 217 315 87 0 chr3 182933695 182933787 -44590791 - MIR SINE MIR -113 149 50 2133 140 7 0 chr3 182934161 182934574 -44590004 + AluSx SINE Alu 1 415 0 2083 131 0 0 chr3 182934641 182934953 -44589625 + AluSx SINE Alu 1 312 0 1460 186 48 0 chr3 182935449 182935718 -44588860 - AluJo SINE Alu -19 293 12 2134 117 40 0 chr3 182936590 182936890 -44587688 - AluSx SINE Alu 0 312 1 235 200 29 43 chr3 182937106 182937176 -44587402 - MER5A DNA MER1_type -93 96 28 2279 103 0 0 chr3 182937564 182937854 -44586724 + AluSg SINE Alu 1 290 -20 2359 90 10 10 chr3 182938450 182938761 -44585817 - AluSq SINE Alu -2 311 1 2015 114 7 0 chr3 182938835 182939106 -44585472 + AluSx SINE Alu 1 273 -39 492 18 0 0 chr3 182939125 182939182 -44585396 + (GGAA)n Simple_repeat Simple_repeat 4 60 0 1079 247 34 47 chr3 182940028 182940324 -44584254 + AluJo SINE Alu 1 292 -10 229 304 87 0 chr3 182940758 182940850 -44583728 - MIR SINE MIR -113 149 50 2185 133 7 0 chr3 182941224 182941565 -44583013 + AluSx SINE Alu 1 343 0 209 53 0 92 chr3 182941573 182941649 -44582929 + (CGAAA)n Simple_repeat Simple_repeat 2 70 0 2107 70 0 18 chr3 182941800 182942072 -44582506 - AluY SINE Alu -44 267 1 2081 142 13 0 chr3 182943054 182943533 -44581045 + AluSg SINE Alu 1 483 0 1122 81 29 0 chr3 182943551 182943725 -44580853 + (GAAA)n Simple_repeat Simple_repeat 1 179 0 219 69 0 0 chr3 182943726 182943755 -44580823 + (CAAG)n Simple_repeat Simple_repeat 4 32 0 * 780 126 11 23 chr3 182943753 182943927 -44580651 + (GAAA)n Simple_repeat Simple_repeat 4 175 0 342 225 227 34 chr3 182944007 182944352 -44580226 + L2 LINE L2 2782 3212 -101 381 296 108 28 chr3 182944471 182944647 -44579931 + MIR SINE MIR 69 258 -4 686 167 0 25 chr3 182946221 182946341 -44578237 - FLAM_A SINE Alu -12 130 14 1135 188 67 13 chr3 182946476 182946715 -44577863 + MLT2C1 LTR ERVL 146 397 0 241 200 0 0 chr3 182946780 182946825 -44577753 + MLT2C1 LTR ERVL 1 45 -352 2293 88 3 0 chr3 182947470 182947755 -44576823 + AluSp SINE Alu 10 295 -18 233 320 50 10 chr3 182947791 182947891 -44576687 + L1ME LINE L1 5612 5715 -406 2310 84 3 29 chr3 182948121 182948257 -44576321 + AluSx SINE Alu 1 139 -173 2302 85 10 0 chr3 182948257 182948564 -44576014 + AluY SINE Alu 1 310 -1 2310 84 3 29 chr3 182948564 182948738 -44575840 + AluSx SINE Alu 139 303 -9 912 130 8 8 chr3 182949173 182949304 -44575274 + FLAM_C SINE Alu 1 131 -12 2404 92 3 0 chr3 182949638 182949944 -44574634 + AluSx SINE Alu 1 307 -5 2296 94 0 0 chr3 182952077 182952364 -44572214 - AluSc SINE Alu -22 287 1 242 301 45 32 chr3 182952799 182952955 -44571623 - MIR SINE MIR -55 207 50 351 0 0 0 chr3 182953327 182953366 -44571212 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 1932 98 8 0 chr3 182953366 182953611 -44570967 - AluSq SINE Alu -66 247 1 486 204 39 10 chr3 182954287 182954390 -44570188 + MER21B LTR ERV1 1 106 -757 262 199 27 55 chr3 182954391 182954537 -44570041 + (TATAA)n Simple_repeat Simple_repeat 5 146 0 3165 206 72 20 chr3 182954538 182955207 -44569371 + MER21B LTR ERV1 93 805 -58 207 0 0 0 chr3 182955207 182955230 -44569348 + (CTTG)n Simple_repeat Simple_repeat 1 23 0 3165 206 72 20 chr3 182955230 182955293 -44569285 + MER21B LTR ERV1 805 863 0 240 244 0 39 chr3 182956386 182956464 -44568114 + L1ME4a LINE L1 6007 6081 -40 239 354 71 0 chr3 182958830 182958957 -44565621 + MIR SINE MIR 14 149 -113 762 188 0 8 chr3 182958958 182959091 -44565487 + AluJb SINE Alu 2 133 -179 1687 139 28 31 chr3 182959599 182959887 -44564691 + AluJo SINE Alu 2 288 -24 809 144 0 8 chr3 182960033 182960158 -44564420 + FLAM_C SINE Alu 1 124 -9 1787 138 28 14 chr3 182960623 182960928 -44563650 - AluSx SINE Alu 0 309 1 2211 120 0 0 chr3 182960929 182961228 -44563350 - AluSx SINE Alu -13 299 1 2218 109 6 6 chr3 182961620 182961933 -44562645 + AluSp SINE Alu 1 313 0 2236 102 0 0 chr3 182962021 182962305 -44562273 - AluSc SINE Alu -25 284 1 372 217 96 0 chr3 182962657 182962772 -44561806 - MER113 DNA MER1_type? -394 127 2 1591 144 67 32 chr3 182962816 182963100 -44561478 + AluJo SINE Alu 1 294 -18 2164 99 3 38 chr3 182963173 182963486 -44561092 - AluSx SINE Alu -10 302 1 1889 166 119 19 chr3 182964384 182964498 -44560080 + MER6 DNA MER2_type 415 516 -349 1277 0 26 32 chr3 182964498 182964741 -44559837 + (TTTTA)n Simple_repeat Simple_repeat 1 241 0 395 19 19 0 chr3 182964741 182964793 -44559785 + (TTATG)n Simple_repeat Simple_repeat 2 54 0 2095 129 0 0 chr3 182964793 182965079 -44559499 - AluSx SINE Alu -26 286 1 1889 166 119 19 chr3 182965079 182965370 -44559208 + MER6 DNA MER2_type 515 865 0 2338 99 3 0 chr3 182965613 182965916 -44558662 - AluSx SINE Alu -8 304 1 543 268 36 71 chr3 182966714 182966938 -44557640 + MER58A DNA MER1_type 6 221 -3 194 302 0 0 chr3 182967017 182967060 -44557518 - L2 LINE L2 -87 3185 3143 2337 100 7 7 chr3 182967685 182967994 -44556584 + AluSq SINE Alu 1 309 -4 233 229 0 33 chr3 182968811 182968872 -44555706 + MER2 DNA MER2_type 268 326 -19 1007 197 53 32 chr3 182969544 182969758 -44554820 - MER44D DNA MER2_type -1883 604 396 1287 220 3 51 chr3 182969758 182969922 -44554656 - AluJb SINE Alu -14 298 155 2053 99 3 67 chr3 182969922 182970236 -44554342 - AluSg SINE Alu -16 294 1 1287 220 3 51 chr3 182970236 182970384 -44554194 - AluJb SINE Alu -157 155 1 1007 197 53 32 chr3 182970384 182970489 -44554089 - MER44D DNA MER2_type -2091 396 157 225 200 0 0 chr3 182970486 182970531 -44554047 - MER44D DNA MER2_type -659 46 2 * 9079 43 3 2 chr3 182973446 182974513 -44550065 - MER11C LTR ERVK 0 1071 4 2118 112 35 0 chr3 182976324 182976610 -44547968 - AluSq SINE Alu -17 296 1 1290 181 5 0 chr3 182976661 182976882 -44547696 - AluSg/x SINE Alu -12 300 79 195 42 0 0 chr3 182978546 182978570 -44546008 + (CCCCAG)n Simple_repeat Simple_repeat 6 29 0 2078 130 3 0 chr3 182980325 182980643 -44543935 - AluSc SINE Alu 0 309 1 1866 129 4 25 chr3 182980932 182981212 -44543366 + AluSx SINE Alu 38 311 -1 183 158 53 0 chr3 182981212 182981250 -44543328 + MER5A DNA MER1_type 66 105 -84 279 286 18 54 chr3 182981321 182981433 -44543145 - LTR67 LTR ERVL -74 483 376 651 233 68 75 chr3 182981533 182981799 -44542779 + MLT1C LTR MaLR 204 467 0 1556 196 13 27 chr3 182981836 182982137 -44542441 - AluJb SINE Alu -15 297 1 2213 113 0 3 chr3 182982149 182982450 -44542128 - AluSx SINE Alu -12 300 1 302 203 0 31 chr3 182982452 182982516 -44542062 + MER5B DNA MER1_type 117 178 0 730 202 8 0 chr3 182982614 182982743 -44541835 - FLAM_A SINE Alu -3 130 1 23 0 0 0 chr3 182983469 182983492 -44541086 + AT_rich Low_complexity Low_complexity 1 23 0 738 253 104 37 chr3 182983599 182984001 -44540577 - MLT1C LTR MaLR -38 429 1 186 231 26 0 chr3 182984005 182984044 -44540534 + MER5B DNA MER1_type 80 119 -59 811 159 61 0 chr3 182984066 182984198 -44540380 - AluJb SINE Alu -33 279 140 2540 82 0 0 chr3 182984206 182984512 -44540066 - AluSg SINE Alu -4 306 1 379 154 15 0 chr3 182984516 182984581 -44539997 + MER5B DNA MER1_type 113 178 0 1506 176 35 17 chr3 182984803 182985092 -44539486 - AluJo SINE Alu -4 308 15 495 308 22 22 chr3 182985133 182985315 -44539263 + MIR SINE MIR 3 184 -78 2224 266 42 28 chr3 182985317 182985431 -44539147 + MER21-int LTR ERV1 3195 3306 -3452 2094 113 7 23 chr3 182985431 182985732 -44538846 - AluSx SINE Alu -16 296 1 2224 266 42 28 chr3 182985732 182986373 -44538205 + MER21-int LTR ERV1 3306 3961 -2797 1591 227 21 68 chr3 182986419 182986891 -44537687 - MER41B LTR ERV1 -29 606 157 1232 261 28 69 chr3 182986959 182987190 -44537388 + MER21-int LTR ERV1 1219 1458 -5300 2349 94 3 10 chr3 182987190 182987488 -44537090 + AluSx SINE Alu 1 296 -16 1232 261 28 69 chr3 182987488 182987678 -44536900 + MER21-int LTR ERV1 1458 1654 -5104 2254 116 0 0 chr3 182987678 182987980 -44536598 + AluSg SINE Alu 1 302 -8 1232 261 28 69 chr3 182987980 182988137 -44536441 + MER21-int LTR ERV1 1654 4450 -2308 827 255 20 5 chr3 182988266 182988466 -44536112 + MER21-int LTR ERV1 1673 1875 -2316 2227 118 3 3 chr3 182988658 182988962 -44535616 + AluSx SINE Alu 1 304 -8 957 186 0 17 chr3 182988962 182989139 -44535439 + AluSg/x SINE Alu 135 308 -2 2324 96 7 0 chr3 182989798 182990100 -44534478 - AluSq SINE Alu -9 304 1 1660 161 0 74 chr3 182990176 182990474 -44534104 + AluJb SINE Alu 9 284 -28 321 89 0 0 chr3 182990495 182990540 -44534038 + (CA)n Simple_repeat Simple_repeat 2 46 0 885 194 9 33 chr3 182990591 182990802 -44533776 - MER2 DNA MER2_type -139 206 1 3303 251 24 77 chr3 182990921 182992149 -44532429 + MER21-int LTR ERV1 2015 3177 -1014 2258 134 0 0 chr3 182992361 182992667 -44531911 - AluSq SINE Alu -7 306 1 192 250 89 0 chr3 182992778 182992834 -44531744 - L2 LINE L2 -3 3269 3209 1877 249 43 0 chr3 182992992 182993434 -44531144 - LOR1b LTR ERV1 0 461 1 880 154 0 0 chr3 182993670 182993800 -44530778 + FLAM_C SINE Alu 1 130 -3 364 163 33 18 chr3 182993800 182993892 -44530686 - AluSq SINE Alu -8 294 239 8152 118 132 23 chr3 182993892 182995396 -44529182 + pTR5 LTR ERV1 771 2438 0 1374 138 8 84 chr3 182995399 182995660 -44528918 - AluSq SINE Alu -72 241 1 1374 151 0 0 chr3 182995660 182995866 -44528712 - AluSq SINE Alu -3 310 105 1754 169 22 25 chr3 182997821 182998135 -44526443 - AluSq SINE Alu 0 313 1 1253 200 0 0 chr3 182998186 182998406 -44526172 - AluSg/x SINE Alu -14 298 79 211 191 0 24 chr3 182999930 182999972 -44524606 + (CCCCAG)n Simple_repeat Simple_repeat 1 41 0 2192 135 0 0 chr3 183001936 183002233 -44522345 - AluSx SINE Alu -15 297 1 1746 124 8 0 chr3 183005105 183005354 -44519224 - AluSx SINE Alu -46 266 16 280 170 0 0 chr3 183005368 183005415 -44519163 - AluSp/q SINE Alu -41 262 216 305 182 45 15 chr3 183005437 183005503 -44519075 - MER5A DNA MER1_type -111 78 11 947 103 7 15 chr3 183005703 183005839 -44518739 + AluSg/x SINE Alu 163 297 -15 234 305 64 44 chr3 183006210 183006374 -44518204 + MIR SINE MIR 37 207 -55 584 224 83 26 chr3 183007226 183007382 -44517196 - FRAM SINE Alu -1 175 11 2245 90 35 0 chr3 183007668 183007957 -44516621 - AluSx SINE Alu -13 299 1 216 0 0 0 chr3 183008762 183008786 -44515792 + (T)n Simple_repeat Simple_repeat 1 24 0 364 211 138 0 chr3 183009343 183009452 -44515126 + MLT1A1 LTR MaLR 1 124 -304 398 125 7 184 chr3 183009534 183009670 -44514908 + MLT1A1 LTR MaLR 254 365 0 182 36 0 36 chr3 183009910 183009938 -44514640 + (CCCCCA)n Simple_repeat Simple_repeat 2 28 0 564 250 65 6 chr3 183009976 183010144 -44514434 + MER5B DNA MER1_type 1 178 0 2282 193 18 42 chr3 183010590 183010836 -44513742 + MER90 LTR ERV1 74 324 -290 1715 186 14 10 chr3 183010836 183011126 -44513452 - AluJo SINE Alu -21 291 1 2282 193 18 42 chr3 183011126 183011433 -44513145 + MER90 LTR ERV1 324 614 0 206 399 52 0 chr3 183011434 183011587 -44512991 - MIR SINE MIR -65 197 37 271 331 85 8 chr3 183011592 183011722 -44512856 + MIR SINE MIR 1 140 -122 1839 148 94 0 chr3 183011727 183012045 -44512533 - LOR1a LTR ERV1 0 497 150 1703 130 8 20 chr3 183012076 183012540 -44512038 - MER51A LTR ERV1 -18 616 1 1027 103 0 6 chr3 183012541 183012697 -44511881 - LOR1b LTR ERV1 -306 155 1 2024 154 21 14 chr3 183012914 183013321 -44511257 + MLT2B3 LTR ERVL 1 454 -61 6862 128 35 13 chr3 183013335 183013607 -44510971 + Tigger3b DNA MER2_type 4 269 -2759 2509 143 43 24 chr3 183013607 183013800 -44510778 + MSTA LTR MaLR 1 189 -239 1769 92 0 0 chr3 183013800 183014017 -44510561 + AluSg/x SINE Alu 85 301 -11 2509 143 43 24 chr3 183014017 183014243 -44510335 + MSTA LTR MaLR 189 428 0 6862 128 35 13 chr3 183014243 183014718 -44509860 + Tigger3b DNA MER2_type 269 732 -2296 2246 119 0 0 chr3 183014718 183015012 -44509566 + AluSx SINE Alu 1 294 -18 6862 128 35 13 chr3 183015012 183015465 -44509113 + Tigger3b DNA MER2_type 732 1231 0 1059 125 0 0 chr3 183015467 183015635 -44508943 + (TCTA)n Simple_repeat Simple_repeat 3 170 0 910 122 7 7 chr3 183015931 183016070 -44508508 + AluSq/x SINE Alu 12 150 -163 1149 123 12 0 chr3 183016220 183016382 -44508196 - AluSq SINE Alu -147 166 3 1770 239 22 112 chr3 183016405 183017120 -44507458 - MER21-int LTR ERV1 -1555 2636 1986 1981 113 3 92 chr3 183017144 183017471 -44507107 - AluSq SINE Alu -15 298 1 1742 193 0 0 chr3 183017642 183017927 -44506651 - AluJb SINE Alu -11 301 17 262 254 0 0 chr3 183017929 183017992 -44506586 - MIR SINE MIR -119 143 81 374 312 53 29 chr3 183018008 183018178 -44506400 + MLT1J LTR MaLR 4 177 -334 202 378 9 18 chr3 183018423 183018534 -44506044 + MIR SINE MIR 27 136 -126 200 293 0 61 chr3 183020315 183020414 -44504164 + CT-rich Low_complexity Low_complexity 2 94 0 1010 147 0 0 chr3 183020782 183020932 -44503646 + AluSg/x SINE Alu 156 305 -7 1542 187 33 30 chr3 183021074 183021374 -44503204 - AluJb SINE Alu -11 301 1 2129 114 21 0 chr3 183021498 183021787 -44502791 - AluSg SINE Alu -14 296 2 2173 89 6 45 chr3 183021796 183022109 -44502469 - AluSq SINE Alu -12 301 1 2019 155 0 0 chr3 183022109 183022419 -44502159 - AluSq SINE Alu -3 310 1 1848 141 7 17 chr3 183022458 183022769 -44501809 - AluSx SINE Alu 0 308 1 1691 169 14 3 chr3 183023261 183023545 -44501033 + AluJb SINE Alu 1 287 -25 2051 141 0 46 chr3 183024192 183024518 -44500060 + AluSx SINE Alu 1 311 -1 4699 241 62 58 chr3 183024843 183026340 -44498238 + MER77-int LTR ERV1 2634 4136 -55 1997 184 56 99 chr3 183026571 183027088 -44497490 + MER77 LTR ERV1 62 556 -49 188 363 98 0 chr3 183027260 183027362 -44497216 + L2 LINE L2 3158 3269 -3 192 40 0 0 chr3 183028855 183028880 -44495698 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2200 80 10 26 chr3 183028916 183029227 -44495351 - AluY SINE Alu -5 306 1 223 310 139 13 chr3 183029470 183029628 -44494950 + MER5B DNA MER1_type 1 178 0 1693 182 14 17 chr3 183029750 183030047 -44494531 + AluJo SINE Alu 1 296 -16 2228 102 41 0 chr3 183030427 183030722 -44493856 - AluSx SINE Alu -5 307 1 237 271 100 0 chr3 183032339 183032409 -44492169 - MIR3 SINE MIR -22 186 110 3133 177 21 3 chr3 183032795 183033360 -44491218 + L1MC3 LINE L1 7211 7785 0 15267 163 87 19 chr3 183033498 183035921 -44488657 + L1MA2 LINE L1 14 2269 -5296 2420 89 0 0 chr3 183035921 183036224 -44488354 - AluY SINE Alu -8 303 1 1948 91 20 0 chr3 183036224 183036475 -44488103 - AluSx SINE Alu -8 304 48 15267 163 87 19 chr3 183036475 183036916 -44487662 + L1MA2 LINE L1 2268 3076 -4489 11830 107 15 18 chr3 183036913 183039841 -44484737 + L1MA2 LINE L1 4145 7248 -475 * 2273 103 3 13 chr3 183040365 183040677 -44483901 + AluSx SINE Alu 1 309 -3 183 353 69 0 chr3 183040838 183040954 -44483624 + L2 LINE L2 3137 3260 -12 219 288 123 0 chr3 183041035 183041108 -44483470 - L2 LINE L2 -31 3241 3160 24 77 0 0 chr3 183041298 183041350 -44483228 + AT_rich Low_complexity Low_complexity 1 52 0 1734 211 44 6 chr3 183042870 183043234 -44481344 - LTR42 LTR ERVL -109 386 9 303 250 12 12 chr3 183043744 183043828 -44480750 - L1ME3 LINE L1 -20 6142 6059 278 275 70 23 chr3 183043952 183044123 -44480455 - L1ME3 LINE L1 -373 5789 5611 333 268 27 75 chr3 183044203 183044402 -44480176 - L1ME3 LINE L1 -690 5472 5321 741 136 51 0 chr3 183044402 183044520 -44480058 + FLAM_C SINE Alu 1 124 -9 333 268 27 75 chr3 183044520 183044681 -44479897 - L1ME3 LINE L1 -841 5321 5154 1954 151 3 3 chr3 183044814 183045118 -44479460 - AluSx SINE Alu -8 304 1 302 208 0 0 chr3 183045128 183045181 -44479397 - FLAM SINE Alu -9 124 72 819 221 90 27 chr3 183045216 183045438 -44479140 + MER6A DNA MER2_type 1 236 -369 207 304 43 0 chr3 183045551 183045620 -44478958 + MIR SINE MIR 179 250 -12 1609 147 38 0 chr3 183046086 183046371 -44478207 + AluJb SINE Alu 9 303 0 199 229 136 86 chr3 183046922 183047062 -44477516 + MIR SINE MIR 90 236 -26 319 232 89 54 chr3 183047520 183047688 -44476890 + LTR67 LTR ERVL 326 499 -58 215 170 43 0 chr3 183047732 183047779 -44476799 - MER5A DNA MER1_type -80 109 61 1037 191 14 47 chr3 183047833 183048048 -44476530 - AluSg/x SINE Alu -15 295 88 993 150 119 48 chr3 183048177 183048440 -44476138 + MER21B LTR ERV1 613 863 0 2352 83 0 10 chr3 183049512 183049813 -44474765 + AluSq SINE Alu 1 298 -15 2531 71 0 6 chr3 183049858 183050169 -44474409 + AluY SINE Alu 1 309 -2 1435 66 0 15 chr3 183050197 183050393 -44474185 + L1MA1 LINE L1 6042 6234 -68 1623 196 2 90 chr3 183100422 183100472 -44424106 - MER63B DNA MER1_type -685 377 324 2552 69 0 0 chr3 183100472 183100775 -44423803 + AluY SINE Alu 1 303 -8 1623 196 2 90 chr3 183100775 183100798 -44423780 - MER63B DNA MER1_type -738 324 301 2081 141 0 7 chr3 183100798 183101102 -44423476 + AluSx SINE Alu 1 302 -10 1623 196 2 90 chr3 183101102 183101440 -44423138 - MER63B DNA MER1_type -761 301 1 280 286 29 0 chr3 183101440 183101509 -44423069 - LTR67 LTR ERVL -79 478 408 653 214 24 0 chr3 183101554 183101680 -44422898 - MER45A DNA AcHobo -49 129 1 287 143 0 0 chr3 183101806 183101848 -44422730 - AluSc SINE Alu -34 265 224 700 218 17 6 chr3 183101853 183102027 -44422551 - L1MC4 LINE L1 -799 7243 7068 1197 201 29 0 chr3 183102033 183102237 -44422341 + MER58A DNA MER1_type 1 210 -14 1646 179 53 12 chr3 183102247 183102566 -44422012 - L1MC4 LINE L1 -969 7073 6742 371 233 107 27 chr3 183102568 183102718 -44421860 - L2 LINE L2 -1038 2276 2115 1113 153 40 5 chr3 183102937 183103139 -44421439 + MER6B DNA MER2_type 1 209 -1 7238 52 14 47 chr3 183103216 183104563 -44420015 + SVA Other Other 220 1406 0 1185 201 127 16 chr3 183104624 183104947 -44419631 - MSTD LTR MaLR 0 396 38 588 287 110 20 chr3 183105056 183105512 -44419066 + L1ME4a LINE L1 5624 6120 -1 328 235 352 0 chr3 183107079 183107275 -44417303 + L1MC4a LINE L1 5660 5924 -1884 23 0 0 0 chr3 183107649 183107672 -44416906 + AT_rich Low_complexity Low_complexity 1 23 0 1755 175 18 0 chr3 183107690 183107976 -44416602 + AluJo SINE Alu 1 291 -21 22 0 0 0 chr3 183109087 183109109 -44415469 + AT_rich Low_complexity Low_complexity 1 22 0 459 282 55 39 chr3 183111680 183111861 -44412717 - MIR3 SINE MIR -12 196 13 271 278 88 31 chr3 183112080 183112274 -44412304 - MLT1J LTR MaLR -19 492 288 634 268 13 0 chr3 183112418 183112575 -44412003 - MER117 DNA MER1_type -38 159 1 347 248 116 0 chr3 183112653 183112774 -44411804 - MIR3 SINE MIR -1 207 73 542 248 25 38 chr3 183112774 183112931 -44411647 + MARNA DNA Mariner 79 233 -353 284 241 0 0 chr3 183113046 183113100 -44411478 + MARNA DNA Mariner 295 348 -238 1197 168 10 5 chr3 183113206 183113414 -44411164 + MER3 DNA MER1_type 1 209 0 1097 169 0 11 chr3 183113730 183113907 -44410671 + FAM SINE Alu 1 175 0 1217 256 122 0 chr3 183114393 183114729 -44409849 + MLT1G LTR MaLR 202 578 -12 2265 118 3 0 chr3 183115244 183115550 -44409028 + AluSx SINE Alu 1 307 -5 1932 163 27 38 chr3 183115896 183116265 -44408313 + MLT1A1 LTR MaLR 1 365 0 620 137 128 0 chr3 183116678 183116795 -44407783 + L1MA6 LINE L1 6169 6300 0 262 291 123 11 chr3 183117038 183117217 -44407361 + MIR SINE MIR 6 204 -58 2729 179 8 50 chr3 183117686 183118284 -44406294 - L1ME3 LINE L1 -1 6161 5589 887 168 84 10 chr3 183119245 183119448 -44405130 - L1ME3 LINE L1 -1048 5098 4881 207 156 0 0 chr3 183119663 183119695 -44404883 + (CAT)n Simple_repeat Simple_repeat 1 32 0 373 283 9 19 chr3 183120215 183120321 -44404257 + MIR SINE MIR 32 136 -72 369 227 117 8 chr3 183120349 183120477 -44404101 + MIR SINE MIR 70 211 -51 428 240 98 82 chr3 183120522 183120551 -44404027 + MIR SINE MIR 5 32 -230 3818 125 2 5 chr3 183120551 183121121 -44403457 + L1PA13 LINE L1 5596 6163 0 428 240 98 82 chr3 183121121 183121274 -44403304 + MIR SINE MIR 32 190 -72 180 322 102 0 chr3 183122029 183122147 -44402431 - MIR SINE MIR -70 192 63 229 228 228 87 chr3 183122272 183122421 -44402157 + L2 LINE L2 2923 3092 -221 1799 139 54 10 chr3 183122459 183122754 -44401824 - AluJb SINE Alu 0 312 5 1425 256 177 41 chr3 183122837 183123447 -44401131 + MER115 DNA AcHobo 1 693 0 230 229 0 0 chr3 183123476 183123524 -44401054 + (TGAA)n Simple_repeat Simple_repeat 1 48 0 1821 180 3 0 chr3 183124595 183124889 -44399689 + AluJo SINE Alu 1 295 -17 2285 124 32 45 chr3 183124898 183125278 -44399300 - THE1C LTR MaLR 0 375 1 235 250 12 75 chr3 183125324 183125404 -44399174 + MIR SINE MIR 53 127 -81 501 200 59 82 chr3 183126079 183126134 -44398444 - MER5B DNA MER1_type -12 166 111 1539 201 14 3 chr3 183126134 183126423 -44398155 + AluJo SINE Alu 4 295 -17 501 200 59 82 chr3 183126423 183126537 -44398041 - MER5B DNA MER1_type -67 111 1 624 283 48 78 chr3 183126654 183127067 -44397511 + MLT1J LTR MaLR 111 511 0 2329 109 0 0 chr3 183127190 183127493 -44397085 + AluSx SINE Alu 1 303 -9 776 152 0 0 chr3 183127772 183127884 -44396694 - AluJb SINE Alu -8 304 193 222 115 58 0 chr3 183128016 183128068 -44396510 + CT-rich Low_complexity Low_complexity 3 57 0 290 297 0 14 chr3 183128116 183128190 -44396388 + L2 LINE L2 3195 3267 -5 2123 125 0 0 chr3 183128479 183128768 -44395810 + AluSg SINE Alu 1 289 -21 1998 149 107 42 chr3 183129235 183129335 -44395243 + MSTA LTR MaLR 1 93 -335 2328 127 36 36 chr3 183129335 183129698 -44394880 - THE1B LTR MaLR 0 364 2 1998 149 107 42 chr3 183129698 183129958 -44394620 + MSTA LTR MaLR 93 392 -36 1589 135 0 83 chr3 183129958 183130247 -44394331 - AluSx SINE Alu 0 312 48 1998 149 107 42 chr3 183130247 183130287 -44394291 + MSTA LTR MaLR 392 428 0 197 211 0 0 chr3 183133072 183133110 -44391468 - MIR3 SINE MIR -20 188 151 210 37 0 0 chr3 183133874 183133901 -44390677 + (TA)n Simple_repeat Simple_repeat 1 27 0 1045 187 33 0 chr3 183133925 183134107 -44390471 - MER5A DNA MER1_type 0 189 2 198 318 16 16 chr3 183134408 183134471 -44390107 + MIR3 SINE MIR 138 200 -8 1262 256 122 20 chr3 183134511 183134914 -44389664 + MLT1J2 LTR MaLR 3 446 -4 197 338 14 0 chr3 183135551 183135622 -44388956 - MIR SINE MIR -123 139 68 676 242 130 117 chr3 183135746 183136201 -44388377 + MLT1J LTR MaLR 46 506 -5 1183 239 157 41 chr3 183136813 183137303 -44387275 - MLT1G1 LTR MaLR -12 583 37 258 315 112 0 chr3 183138372 183138461 -44386117 + MIR SINE MIR 32 130 -78 1644 140 7 88 chr3 183138667 183138974 -44385604 - AluJo SINE Alu -30 282 1 822 259 100 9 chr3 183139093 183139313 -44385265 - MIR SINE MIR -14 248 9 273 57 0 0 chr3 183139709 183139744 -44384834 + (TA)n Simple_repeat Simple_repeat 1 35 0 367 233 113 75 chr3 183140277 183140342 -44384236 - MER103 DNA DNA 0 166 105 1229 229 85 40 chr3 183140342 183140670 -44383908 + MER2 DNA MER2_type 2 344 0 367 233 113 75 chr3 183140670 183140700 -44383878 - MER103 DNA DNA -61 105 78 2266 108 0 0 chr3 183140700 183140997 -44383581 - AluSx SINE Alu -15 297 1 367 233 113 75 chr3 183140997 183141059 -44383519 - MER103 DNA DNA -88 78 2 1862 178 26 29 chr3 183141219 183141568 -44383010 - MER7A DNA MER2_type 0 346 1 600 269 99 0 chr3 183142279 183142450 -44382128 - MIR SINE MIR 0 262 75 482 239 311 35 chr3 183142632 183143037 -44381541 - LTR33A LTR ERVL 0 523 7 1681 162 20 20 chr3 183143085 183143382 -44381196 + AluJb SINE Alu 1 297 -15 189 274 41 27 chr3 183143617 183143690 -44380888 - L2 LINE L2 -4 3309 3236 877 141 0 16 chr3 183144172 183144300 -44380278 + FLAM_C SINE Alu 2 127 -6 234 306 16 49 chr3 183145739 183145916 -44378662 + MIR SINE MIR 31 219 -43 378 262 76 48 chr3 183146637 183146782 -44377796 + L2 LINE L2 3163 3311 -2 2108 128 20 3 chr3 183148442 183148747 -44375831 + AluSx SINE Alu 1 310 -2 349 254 108 111 chr3 183150442 183150785 -44373793 - L1M2 LINE L1 -5851 998 657 311 303 227 39 chr3 183150636 183151349 -44373229 + L1M2 LINE L1 537 1383 -5466 * 303 297 93 88 chr3 183150924 183151399 -44373179 - L1M2 LINE L1 -5897 952 476 * 25 0 0 0 chr3 183152969 183152994 -44371584 + AT_rich Low_complexity Low_complexity 1 25 0 22 0 0 0 chr3 183153407 183153429 -44371149 + AT_rich Low_complexity Low_complexity 1 22 0 2072 139 0 3 chr3 183154299 183154602 -44369976 - AluJb SINE Alu -10 302 1 1241 199 102 34 chr3 183154856 183155178 -44369400 - MER2 DNA MER2_type 0 344 1 270 0 0 0 chr3 183155180 183155210 -44369368 + (TG)n Simple_repeat Simple_repeat 2 31 0 252 0 0 0 chr3 183156104 183156132 -44368446 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1618 167 15 7 chr3 183156146 183156416 -44368162 - AluJb SINE Alu -40 272 1 2270 111 0 0 chr3 183157923 183158221 -44366357 - AluSx SINE Alu -13 299 2 1955 140 39 0 chr3 183158370 183158656 -44365922 + AluSx SINE Alu 1 297 -15 3018 145 63 12 chr3 183159084 183159589 -44364989 - LTR26B LTR ERV1 0 531 1 1992 141 10 0 chr3 183159737 183160027 -44364551 - AluSx SINE Alu -19 293 1 1762 154 10 30 chr3 183160305 183160610 -44363968 + AluSx SINE Alu 1 299 -13 1253 94 6 17 chr3 183160740 183160920 -44363658 - L1MA5A LINE L1 0 6297 6120 387 0 0 0 chr3 183160927 183160970 -44363608 + (TG)n Simple_repeat Simple_repeat 2 44 0 663 164 10 0 chr3 183160970 183161074 -44363504 - FLAM_C SINE Alu -37 106 2 972 263 29 0 chr3 183162164 183162407 -44362171 - MIR SINE MIR 0 262 13 180 0 0 0 chr3 183162443 183162463 -44362115 + (TA)n Simple_repeat Simple_repeat 2 21 0 1851 135 14 37 chr3 183162463 183162759 -44361819 - AluJb SINE Alu -6 306 18 1770 181 16 0 chr3 183163255 183163559 -44361019 + AluJo SINE Alu 1 309 -3 317 164 74 123 chr3 183163564 183163686 -44360892 + MIR SINE MIR 5 120 -142 4079 110 33 23 chr3 183164115 183164640 -44359938 + L1P5 LINE L1 582 1100 -5763 2192 86 0 28 chr3 183164640 183164961 -44359617 - AluY SINE Alu 0 313 1 4079 110 33 23 chr3 183164961 183165620 -44358958 + L1P5 LINE L1 1100 1921 -4942 1969 185 150 23 chr3 183165620 183166106 -44358472 - LTR10A LTR ERV1 -61 548 1 13286 205 21 12 chr3 183166106 183168404 -44356174 + L1P5 LINE L1 1910 4313 -2549 2284 112 0 0 chr3 183168404 183168708 -44355870 + AluSx SINE Alu 1 304 -8 13286 205 21 12 chr3 183168708 183170123 -44354455 + L1P5 LINE L1 4313 5713 -1149 1759 97 91 129 chr3 183170123 183170574 -44354004 - LTR14B LTR ERVK 0 608 1 3495 133 33 6 chr3 183170577 183171357 -44353221 + L1P5 LINE L1 5708 6507 -360 506 79 13 0 chr3 183171357 183171433 -44353145 + (TA)n Simple_repeat Simple_repeat 1 77 0 236 163 0 0 chr3 183171458 183171501 -44353077 - LTR66 LTR ERVL -170 440 398 1908 170 24 50 chr3 183171535 183171959 -44352619 + L1MB8 LINE L1 5655 6067 -111 28 0 0 0 chr3 183171959 183171987 -44352591 + AT_rich Low_complexity Low_complexity 1 28 0 4209 185 51 11 chr3 183172333 183173219 -44351359 - L1MD2 LINE L1 -221 6138 5215 1089 189 74 79 chr3 183173239 183173562 -44351016 - HAL1 LINE L1 -1 2506 2184 786 187 65 108 chr3 183173562 183173915 -44350663 + MER46C DNA MER2_type 1 338 0 1089 189 74 79 chr3 183173915 183173998 -44350580 - HAL1 LINE L1 -323 2184 2102 216 258 15 15 chr3 183174148 183174214 -44350364 + L2 LINE L2 3001 3066 -247 205 146 21 21 chr3 183174219 183174267 -44350311 + (TTA)n Simple_repeat Simple_repeat 1 48 0 22 0 0 0 chr3 183174284 183174306 -44350272 + AT_rich Low_complexity Low_complexity 1 22 0 835 134 65 85 chr3 183174306 183174366 -44350212 - L1PB3 LINE L1 -9 6145 6085 237 60 20 40 chr3 183174366 183174416 -44350162 + (TTTTG)n Simple_repeat Simple_repeat 2 50 0 2127 83 18 7 chr3 183174419 183174697 -44349881 - AluSx SINE Alu -30 282 2 835 134 65 85 chr3 183174697 183174833 -44349745 - L1PB3 LINE L1 -71 6083 5949 472 259 121 42 chr3 183174839 183175078 -44349500 + L2 LINE L2 3056 3313 0 4939 216 35 38 chr3 183177037 183177213 -44347365 + MER21-int LTR ERV1 3085 3260 -3498 4323 67 18 22 chr3 183177213 183177811 -44346767 - MER4A LTR ERV1 -4 596 1 4939 216 35 38 chr3 183177811 183178896 -44345682 + MER21-int LTR ERV1 3260 4342 -2416 772 154 0 15 chr3 183178904 183179034 -44345544 - FLAM_C SINE Alu 0 143 16 1178 144 46 0 chr3 183179037 183179232 -44345346 + LTR24 LTR ERV1 264 467 0 4649 217 65 48 chr3 183179232 183179871 -44344707 + MER21-int LTR ERV1 1783 2409 -1782 1755 141 78 0 chr3 183179871 183180141 -44344437 - AluJb SINE Alu -19 293 3 4649 217 65 48 chr3 183180141 183180757 -44343821 + MER21-int LTR ERV1 2409 3060 -1131 1762 233 54 105 chr3 183180870 183181500 -44343078 + MER21B LTR ERV1 40 631 -232 1983 117 0 28 chr3 183181500 183181817 -44342761 + AluSx SINE Alu 4 312 0 1762 233 54 105 chr3 183181817 183181909 -44342669 + MER21B LTR ERV1 631 726 -137 284 0 111 0 chr3 183181949 183181994 -44342584 - L1MB4 LINE L1 -3 6177 6128 2705 112 48 16 chr3 183182514 183182998 -44341580 - L1MB4 LINE L1 0 6180 5682 1599 189 0 39 chr3 183183746 183184058 -44340520 + AluJb SINE Alu 1 300 -12 326 337 179 14 chr3 183185760 183186045 -44338533 + L2 LINE L2 1333 1664 -1650 515 245 163 66 chr3 183186230 183186489 -44338089 - L2 LINE L2 -5 3308 3003 1587 172 0 8 chr3 183186489 183186750 -44337828 + AluJb SINE Alu 41 299 -13 515 245 163 66 chr3 183186750 183186853 -44337725 - L2 LINE L2 -310 3003 2911 689 242 165 61 chr3 183186988 183187292 -44337286 - MER34B LTR ERV1 0 565 294 1300 178 140 19 chr3 183187292 183187556 -44337022 - AluJb SINE Alu -6 296 1 689 242 165 61 chr3 183187556 183187792 -44336786 - MER34B LTR ERV1 -271 294 5 354 308 154 64 chr3 183187802 183188361 -44336217 + L2 LINE L2 2158 2766 -548 2157 105 16 0 chr3 183188598 183188902 -44335676 - AluY SINE Alu -2 309 1 885 132 0 0 chr3 183188906 183189027 -44335551 - FLAM_C SINE Alu -16 127 7 1659 187 10 7 chr3 183189051 183189340 -44335238 - AluJb SINE Alu -22 290 1 1574 172 0 57 chr3 183189350 183189666 -44334912 - AluJb SINE Alu 0 304 6 434 311 53 111 chr3 183189778 183190157 -44334421 + L2 LINE L2 2915 3271 -1 21 0 0 0 chr3 183190419 183190440 -44334138 + AT_rich Low_complexity Low_complexity 1 21 0 226 240 0 20 chr3 183191253 183191303 -44333275 + CT-rich Low_complexity Low_complexity 2 50 0 1896 165 13 13 chr3 183191303 183191612 -44332966 - AluJb SINE Alu 0 312 4 216 292 183 25 chr3 183192298 183192418 -44332160 + L2 LINE L2 3134 3272 0 856 154 0 0 chr3 183192664 183192794 -44331784 - FLAM_A SINE Alu 0 133 4 209 318 114 23 chr3 183193583 183193671 -44330907 + L2 LINE L2 2959 3054 -218 2243 107 20 0 chr3 183193878 183194176 -44330402 + AluSx SINE Alu 1 304 -8 22 35 0 0 chr3 183194440 183194469 -44330109 + AT_rich Low_complexity Low_complexity 1 29 0 2098 134 0 0 chr3 183194941 183195232 -44329346 - AluSx SINE Alu -21 291 1 24 0 0 0 chr3 183196003 183196027 -44328551 + AT_rich Low_complexity Low_complexity 1 24 0 1828 201 109 60 chr3 183196729 183197451 -44327127 + L1MC5 LINE L1 7160 7917 -44 323 340 57 25 chr3 183197482 183197726 -44326852 + L2 LINE L2 2068 2319 -995 679 123 25 66 chr3 183197878 183198000 -44326578 - MER2 DNA MER2_type -226 119 3 460 322 170 39 chr3 183198247 183198707 -44325871 - L2 LINE L2 -585 2729 2210 330 303 26 113 chr3 183199106 183199301 -44325277 - L2 LINE L2 -2822 492 315 1896 108 74 0 chr3 183199589 183199858 -44324720 + AluSx SINE Alu 1 289 -23 413 281 62 38 chr3 183199959 183200119 -44324459 + MIR SINE MIR 87 250 -12 24 67 0 0 chr3 183200723 183200768 -44323810 + AT_rich Low_complexity Low_complexity 1 45 0 248 125 0 21 chr3 183200838 183200886 -44323692 - AluSg SINE Alu -6 296 250 1499 117 0 19 chr3 183200887 183201100 -44323478 - AluSg SINE Alu -100 210 2 613 313 209 9 chr3 183201623 183202064 -44322514 + L2 LINE L2 1977 2505 -809 27 0 0 0 chr3 183202689 183202716 -44321862 + AT_rich Low_complexity Low_complexity 1 27 0 3127 155 31 51 chr3 183202971 183203584 -44320994 + LTR9 LTR ERV1 1 601 -11 486 302 35 17 chr3 183203749 183203921 -44320657 + MER5B DNA MER1_type 1 175 -3 609 228 152 0 chr3 183204728 183204873 -44319705 + FRAM SINE Alu 1 166 -10 2610 70 3 0 chr3 183206023 183206352 -44318226 + MER50-int LTR ERV1 6868 7197 -8 3489 143 18 45 chr3 183206352 183206927 -44317651 + MER50 LTR ERV1 1 559 -175 1903 152 3 10 chr3 183206927 183207229 -44317349 + AluJb SINE Alu 1 300 -12 3489 143 18 45 chr3 183207229 183207270 -44317308 + MER50 LTR ERV1 559 600 -134 248 335 95 19 chr3 183208029 183208187 -44316391 - MIR SINE MIR -86 176 7 34 55 0 0 chr3 183209114 183209169 -44315409 + AT_rich Low_complexity Low_complexity 1 55 0 986 275 102 27 chr3 183209350 183209791 -44314787 + L1MC4a LINE L1 5464 5629 -533 894 156 0 0 chr3 183209988 183210129 -44314449 + FLAM_C SINE Alu 1 141 -2 23 33 0 0 chr3 183210130 183210160 -44314418 + AT_rich Low_complexity Low_complexity 1 30 0 1538 211 96 28 chr3 183211125 183211593 -44312985 - LTR48B LTR ERV1 0 644 145 432 103 0 0 chr3 183211587 183211645 -44312933 - LTR29 LTR ERV1 -564 58 1 * 195 234 43 21 chr3 183211671 183211718 -44312860 - L2 LINE L2 -15 3257 3210 1173 232 79 50 chr3 183211765 183212396 -44312182 + MER21B LTR ERV1 20 731 -132 1427 187 0 32 chr3 183212432 183212715 -44311863 + MER21B-int LTR ERV1 47 320 -3871 281 216 20 0 chr3 183212826 183212877 -44311701 + MER21B-int LTR ERV1 378 429 -3762 1307 230 69 62 chr3 183212883 183212996 -44311582 + MER21B-int LTR ERV1 1088 1199 -2992 2291 71 37 0 chr3 183212996 183213292 -44311286 + AluY SINE Alu 3 309 -2 5603 102 48 1 chr3 183213302 183214392 -44310186 + L1PA14 LINE L1 5023 6152 -9 1307 230 69 62 chr3 183214392 183214802 -44309776 + MER21B-int LTR ERV1 1207 1626 -2565 582 198 20 0 chr3 183214950 183215051 -44309527 + MER21B-int LTR ERV1 1684 1786 -2405 2140 114 7 3 chr3 183215069 183215367 -44309211 + AluSx SINE Alu 14 312 0 1787 87 79 12 chr3 183215492 183215783 -44308795 - AluSq SINE Alu 0 319 12 8161 207 75 27 chr3 183215792 183217407 -44307171 + MER21B-int LTR ERV1 1686 3410 -781 2085 77 8 0 chr3 183217407 183217666 -44306912 - AluSg SINE Alu -8 302 42 8161 207 75 27 chr3 183217666 183217974 -44306604 + MER21B-int LTR ERV1 3410 3702 -489 1440 155 37 34 chr3 183217986 183218282 -44306296 + MER21B-int LTR ERV1 3848 4144 -47 1743 218 115 86 chr3 183218515 183219151 -44305427 + MER21B LTR ERV1 13 672 -191 1880 156 0 7 chr3 183219151 183219452 -44305126 - AluJb SINE Alu -13 299 1 1743 218 115 86 chr3 183219452 183219521 -44305057 + MER21B LTR ERV1 672 738 -125 4150 153 35 38 chr3 183220029 183220254 -44304324 + L1MB1 LINE L1 5370 5594 -574 1695 146 35 14 chr3 183220254 183220541 -44304037 + AluJo SINE Alu 1 293 -19 4150 153 35 38 chr3 183220541 183221115 -44303463 + L1MB1 LINE L1 5594 6167 -1 671 330 139 30 chr3 183221361 183222016 -44302562 + L2 LINE L2 1540 2265 -1049 23 54 0 0 chr3 183222555 183222592 -44301986 + AT_rich Low_complexity Low_complexity 1 37 0 1507 149 43 120 chr3 183223567 183223942 -44300636 - MER7A DNA MER2_type -2 344 1 942 288 158 2 chr3 183224443 183224867 -44299711 + L2 LINE L2 2006 2495 -819 527 257 441 0 chr3 183224885 183225239 -44299339 + L2 LINE L2 2804 3313 0 23 54 0 0 chr3 183225387 183225424 -44299154 + AT_rich Low_complexity Low_complexity 1 37 0 420 280 79 19 chr3 183226827 183227041 -44297537 - L1ME LINE L1 -383 5738 5512 230 232 126 21 chr3 183228343 183228438 -44296140 - MER112 DNA MER1_type -12 248 144 228 203 219 0 chr3 183228437 183228501 -44296077 + Charlie1 DNA MER1_type 55 132 -2629 * 485 199 157 12 chr3 183228512 183228678 -44295900 + Charlie1 DNA MER1_type 2572 2761 0 190 240 240 0 chr3 183229117 183229167 -44295411 + L2 LINE L2 3241 3302 -11 213 259 111 0 chr3 183229197 183229251 -44295327 + MIR SINE MIR 48 107 -155 347 272 74 80 chr3 183229275 183229360 -44295218 + MIR SINE MIR 2 87 -175 2523 66 0 0 chr3 183229360 183229663 -44294915 - AluY SINE Alu -5 306 4 347 272 74 80 chr3 183229663 183229739 -44294839 + MIR SINE MIR 87 162 -100 26 30 0 0 chr3 183230699 183230732 -44293846 + AT_rich Low_complexity Low_complexity 1 33 0 504 257 40 0 chr3 183231769 183231870 -44292708 - L2 LINE L2 0 3272 3168 370 225 175 0 chr3 183232009 183232089 -44292489 - MER63 DNA MER1_type -2 1059 966 1564 206 0 3 chr3 183232094 183232380 -44292198 - AluJo SINE Alu -27 285 1 180 314 47 52 chr3 183232824 183232996 -44291582 + L3 LINE CR1 788 958 -619 2020 163 52 0 chr3 183233689 183234032 -44290546 + MLT1A1 LTR MaLR 1 361 -4 1394 206 73 14 chr3 183234089 183234341 -44290237 + L1MC5 LINE L1 5615 5895 -1913 2160 101 10 3 chr3 183234341 183234629 -44289949 + AluY SINE Alu 2 291 -20 1394 206 73 14 chr3 183234629 183234731 -44289847 + L1MC5 LINE L1 5895 5990 -1818 609 218 99 80 chr3 183234989 183235785 -44288793 + L1MC5 LINE L1 6650 7264 -544 1496 174 58 18 chr3 183235785 183236098 -44288480 + AluJb SINE Alu 1 324 0 609 218 99 80 chr3 183236098 183236413 -44288165 + L1MC5 LINE L1 7264 7572 -236 613 232 162 15 chr3 183236505 183236703 -44287875 - L2 LINE L2 -2728 586 360 2104 102 0 16 chr3 183236707 183237012 -44287566 - AluY SINE Alu -11 300 1 207 203 324 0 chr3 183237094 183237168 -44287410 + MER91C DNA MER1_type 22 119 -21 734 49 54 18 chr3 183237503 183237728 -44286850 + (TA)n Simple_repeat Simple_repeat 1 233 0 665 68 81 0 chr3 183237740 183238047 -44286531 + (TA)n Simple_repeat Simple_repeat 1 331 0 904 170 49 5 chr3 183238540 183238764 -44285814 - AluSg/x SINE Alu -11 301 68 400 252 147 107 chr3 183238876 183239408 -44285170 - L1M2 LINE L1 -5716 1133 581 382 78 86 0 chr3 183239561 183239689 -44284889 + (TA)n Simple_repeat Simple_repeat 1 139 0 2277 90 3 7 chr3 183240181 183240480 -44284098 - AluSg SINE Alu -12 298 1 973 178 5 26 chr3 183241434 183241625 -44282953 - MER4C LTR ERV1 -3 462 276 288 0 0 0 chr3 183241626 183241658 -44282920 + (GGGA)n Simple_repeat Simple_repeat 4 35 0 1821 124 30 119 chr3 183241658 183242174 -44282404 - MER4A LTR ERV1 -156 346 1 2383 254 30 12 chr3 183242536 183243103 -44281475 + MLT1E LTR MaLR 17 593 0 826 304 75 14 chr3 183243297 183243590 -44280988 + MLT1K LTR MaLR 220 530 -58 444 243 27 36 chr3 183243663 183243774 -44280804 + L2 LINE L2 3204 3313 0 35 63 0 0 chr3 183243861 183243924 -44280654 + AT_rich Low_complexity Low_complexity 1 63 0 1676 225 76 40 chr3 183244238 183244816 -44279762 + L1MC5 LINE L1 7331 7929 -32 1369 234 50 67 chr3 183245281 183245835 -44278743 + MER39 LTR ERV1 1 707 0 22 0 0 0 chr3 183245899 183245921 -44278657 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 183246627 183246655 -44277923 + AT_rich Low_complexity Low_complexity 1 28 0 1524 178 78 0 chr3 183248055 183248364 -44276214 - MER44D DNA MER2_type -4 605 3 29 0 0 0 chr3 183248380 183248409 -44276169 + AT_rich Low_complexity Low_complexity 1 29 0 186 43 0 0 chr3 183248594 183248617 -44275961 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 7407 42 0 0 chr3 183248617 183250079 -44274499 - L1PA3 LINE L1 -10 6145 4684 15101 33 1 1 chr3 183250079 183251914 -44272664 + L1PA3 LINE L1 2867 4701 -1445 2060 135 28 14 chr3 183252153 183252508 -44272070 - MER46B DNA MER2_type -1 235 1 31 68 0 0 chr3 183252532 183252591 -44271987 + AT_rich Low_complexity Low_complexity 1 59 0 304 53 0 0 chr3 183252610 183252648 -44271930 - L1PA13 LINE L1 -93 6070 6033 475 116 0 12 chr3 183252649 183252735 -44271843 + L1PA13 LINE L1 6078 6162 -1 10707 132 20 22 chr3 183252844 183254752 -44269826 + L1PA12 LINE L1 3586 5481 -687 2256 112 0 0 chr3 183254752 183255056 -44269522 + AluSx SINE Alu 1 304 -8 10707 132 20 22 chr3 183255056 183255733 -44268845 + L1PA12 LINE L1 5481 6158 -10 244 228 30 59 chr3 183255993 183256094 -44268484 + LTR48B LTR ERV1 1 98 -546 1448 178 24 70 chr3 183256117 183256487 -44268091 + MER39 LTR ERV1 355 707 0 714 228 70 0 chr3 183256543 183256701 -44267877 + MER5A DNA MER1_type 9 177 -12 448 250 38 56 chr3 183256710 183256870 -44267708 + MER5B DNA MER1_type 6 162 -16 574 178 30 81 chr3 183257076 183257116 -44267462 - L1MC5 LINE L1 -52 7909 7869 920 197 33 0 chr3 183257116 183257299 -44267279 - MER5A DNA MER1_type 0 189 1 574 178 30 81 chr3 183257299 183257455 -44267123 - L1MC5 LINE L1 -92 7869 7723 504 160 11 32 chr3 183257456 183257550 -44267028 - Tigger7 DNA MER2_type 0 2487 2396 * 2993 158 37 12 chr3 183257541 183258055 -44266523 - Tigger7 DNA MER2_type -205 528 2 1071 179 92 38 chr3 183258108 183258241 -44266337 - L1MC5 LINE L1 -334 7627 7503 1604 181 28 14 chr3 183258241 183258529 -44266049 - AluJo SINE Alu -20 292 1 1071 179 92 38 chr3 183258529 183258741 -44265837 - L1MC5 LINE L1 -458 7503 7263 646 270 89 18 chr3 183258767 183259028 -44265550 + MER54A LTR ERVL 113 591 -285 815 189 58 49 chr3 183259241 183259484 -44265094 - L1MC5 LINE L1 -695 7266 7022 7129 133 34 6 chr3 183259484 183260675 -44263903 - Tigger3b DNA MER2_type -3 1228 4 664 236 114 20 chr3 183260699 183260945 -44263633 + L1MC5 LINE L1 7613 7881 -80 2155 98 28 0 chr3 183261001 183261287 -44263291 - AluSg SINE Alu -16 294 1 536 215 88 95 chr3 183261287 183261601 -44262977 - L1MC5 LINE L1 -901 6907 6617 257 200 0 18 chr3 183261720 183261775 -44262803 - FLAM_A SINE Alu -6 127 74 2154 111 30 0 chr3 183261796 183262094 -44262484 - AluSx SINE Alu -5 307 1 3072 155 60 2 chr3 183262222 183262808 -44261770 - L1MB7 LINE L1 -2 6182 5563 382 312 120 13 chr3 183262917 183263151 -44261427 - L1MC4a LINE L1 -1573 6235 5977 204 40 0 0 chr3 183263156 183263181 -44261397 + (TG)n Simple_repeat Simple_repeat 2 26 0 447 316 96 45 chr3 183263662 183263916 -44260662 - HAL1b LINE L1 -548 800 560 2031 113 10 10 chr3 183263916 183264207 -44260371 + AluSg SINE Alu 1 291 -19 447 316 96 45 chr3 183264207 183264620 -44259958 - HAL1b LINE L1 -788 560 99 1438 161 24 12 chr3 183264637 183264892 -44259686 + L1M3f LINE L1 1 258 -5070 1738 130 3 89 chr3 183264894 183265218 -44259360 + AluJb SINE Alu 1 296 -16 670 233 36 10 chr3 183265445 183265638 -44258940 - MER34B LTR ERV1 -4 561 364 479 167 133 0 chr3 183265649 183265769 -44258809 + L1ME3 LINE L1 6026 6161 -1 2162 244 99 9 chr3 183266899 183267457 -44257121 - MLT1E2 LTR MaLR -6 620 13 1461 169 35 23 chr3 183267589 183267849 -44256729 - AluJb SINE Alu -14 298 36 207 286 44 55 chr3 183268716 183268807 -44255771 - MIR3 SINE MIR -10 198 109 21 82 0 0 chr3 183270009 183270058 -44254520 + AT_rich Low_complexity Low_complexity 1 49 0 471 280 187 18 chr3 183270264 183270489 -44254089 + L2 LINE L2 3047 3309 -4 365 304 96 0 chr3 183270540 183270665 -44253913 - L1ME LINE L1 -477 5644 5508 414 211 204 0 chr3 183270783 183270925 -44253653 - L1M4 LINE L1 -5210 1332 1162 * 6921 123 13 10 chr3 183270921 183271995 -44252583 + L1MA2 LINE L1 4896 5979 -325 1987 121 0 24 chr3 183271995 183272292 -44252286 + AluSx SINE Alu 19 308 -4 6921 123 13 10 chr3 183272292 183272619 -44251959 + L1MA2 LINE L1 5979 6303 -1 1739 142 46 14 chr3 183272629 183272975 -44251603 + L1MA7 LINE L1 5935 6291 0 1935 255 66 5 chr3 183272987 183273551 -44251027 - L1M4 LINE L1 -5364 1178 581 680 295 36 20 chr3 183273760 183274011 -44250567 - L1M4 LINE L1 -6282 260 6 638 299 70 19 chr3 183274217 183274593 -44249985 - L1MC4a LINE L1 -202 5919 5525 206 81 27 0 chr3 183274682 183274719 -44249859 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 239 256 67 0 chr3 183274719 183274802 -44249776 - L1MC4a LINE L1 -2403 5405 5314 471 216 29 0 chr3 183274974 183275076 -44249502 + L1ME LINE L1 31 135 -5935 2623 192 35 29 chr3 183275076 183275697 -44248881 + L1MB7 LINE L1 5560 6184 0 2178 104 3 3 chr3 183275739 183276038 -44248540 + AluSx SINE Alu 1 299 -13 2195 117 0 3 chr3 183276705 183277004 -44247574 + AluSx SINE Alu 1 298 -14 2212 110 0 0 chr3 183277107 183277397 -44247181 + AluSc SINE Alu 1 290 -19 704 246 125 47 chr3 183277616 183278111 -44246467 - L1ME4a LINE L1 -43 6078 5545 511 166 29 7 chr3 183278111 183278250 -44246328 + (TA)n Simple_repeat Simple_repeat 1 142 0 2166 43 91 14 chr3 183278590 183278866 -44245712 - AluY SINE Alu -14 297 1 257 371 34 22 chr3 183279085 183279263 -44245315 + MER5A DNA MER1_type 2 181 -8 337 362 63 36 chr3 183279401 183279735 -44244843 + L2 LINE L2 2534 2876 -438 358 302 145 76 chr3 183280106 183280450 -44244128 + L2 LINE L2 2903 3270 -2 31 76 0 0 chr3 183280500 183280566 -44244012 + AT_rich Low_complexity Low_complexity 1 66 0 2192 106 0 13 chr3 183280939 183281251 -44243327 + AluY SINE Alu 1 308 -3 1597 201 7 7 chr3 183281824 183282122 -44242456 - AluJo SINE Alu -14 298 1 27 29 0 0 chr3 183282784 183282818 -44241760 + AT_rich Low_complexity Low_complexity 1 34 0 1670 200 3 13 chr3 183283087 183283392 -44241186 - AluJo SINE Alu -10 302 1 1183 188 25 0 chr3 183283678 183283880 -44240698 - AluJo SINE Alu -19 293 87 1565 164 25 31 chr3 183284559 183284884 -44239694 - AluJb SINE Alu 0 323 1 369 200 0 0 chr3 183285102 183285162 -44239416 + MER2 DNA MER2_type 1 60 -285 416 105 0 0 chr3 183285168 183285225 -44239353 - AluJ/FLAM SINE Alu -255 57 1 28 0 0 0 chr3 183285367 183285395 -44239183 + AT_rich Low_complexity Low_complexity 1 28 0 408 311 41 8 chr3 183285417 183285539 -44239039 + L2 LINE L2 3147 3272 0 698 91 0 0 chr3 183285949 183286037 -44238541 + L1PA6 LINE L1 11 98 -6048 * 34274 72 8 11 chr3 183286035 183291584 -44232994 + L1PA6 LINE L1 623 6152 -2 682 271 29 87 chr3 183292125 183292402 -44232176 - MIR SINE MIR -1 261 1 251 232 0 18 chr3 183293185 183293241 -44231337 + MER5B DNA MER1_type 1 55 -123 3591 117 89 14 chr3 183293246 183293877 -44230701 - L1MA3 LINE L1 0 6305 5628 189 121 0 0 chr3 183294623 183294656 -44229922 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 180 0 0 0 chr3 183294931 183294951 -44229627 + (A)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr3 183295865 183295893 -44228685 + AT_rich Low_complexity Low_complexity 1 28 0 38 22 0 0 chr3 183296172 183296217 -44228361 + AT_rich Low_complexity Low_complexity 1 45 0 192 219 0 0 chr3 183296819 183296860 -44227718 + MIR SINE MIR 189 229 -33 1829 166 3 3 chr3 183298024 183298314 -44226264 - AluJb SINE Alu -22 290 1 295 299 127 0 chr3 183299513 183299647 -44224931 + L1M4 LINE L1 4969 5119 -1027 950 129 0 0 chr3 183299648 183299780 -44224798 - AluJb SINE Alu -180 132 1 3606 120 13 8 chr3 183300022 183300546 -44224032 - MER1A DNA MER1_type 0 527 1 812 123 9 0 chr3 183300741 183300855 -44223723 + AluJb SINE Alu 6 120 -192 771 181 13 0 chr3 183300857 183301006 -44223572 + AluSc SINE Alu 157 307 -2 418 324 102 38 chr3 183302791 183303084 -44221494 - L2 LINE L2 -1424 1890 1579 2352 214 48 16 chr3 183303096 183303643 -44220935 + MLT1F1 LTR MaLR 1 564 -3 29 0 0 0 chr3 183304273 183304302 -44220276 + AT_rich Low_complexity Low_complexity 1 29 0 4316 209 71 48 chr3 183304987 183306292 -44218286 + L1MC4 LINE L1 6704 8039 -3 234 115 58 58 chr3 183306363 183306415 -44218163 - MIR SINE MIR -29 233 182 272 191 48 95 chr3 183306582 183306601 -44217977 + MLT1K LTR MaLR 170 188 -400 1812 124 7 18 chr3 183306601 183306874 -44217704 - AluSx SINE Alu -7 305 36 272 191 48 95 chr3 183306874 183306938 -44217640 + MLT1K LTR MaLR 188 249 -339 285 265 128 8 chr3 183307084 183307201 -44217377 + MLT1K LTR MaLR 458 588 0 1785 162 14 21 chr3 183307525 183307809 -44216769 + AluJo SINE Alu 1 282 -30 234 0 0 0 chr3 183307812 183307838 -44216740 + (TA)n Simple_repeat Simple_repeat 2 27 0 413 218 69 4 chr3 183310040 183310243 -44214335 - MER5C DNA MER1_type 0 324 39 2351 93 0 3 chr3 183310535 183310835 -44213743 + AluSx SINE Alu 1 299 -13 644 263 78 15 chr3 183313171 183313376 -44211202 + L2 LINE L2 2504 2721 -593 * 1849 271 53 61 chr3 183313375 183313796 -44210782 - L2 LINE L2 -422 2892 2478 2455 70 0 0 chr3 183313796 183314095 -44210483 + AluSg SINE Alu 1 299 -11 1849 271 53 61 chr3 183314095 183314395 -44210183 - L2 LINE L2 -836 2478 2177 960 281 150 11 chr3 183314396 183314777 -44209801 - L2 LINE L2 -2335 979 546 639 313 0 11 chr3 183314802 183315067 -44209511 + L1M4 LINE L1 3535 3796 -2350 381 175 16 0 chr3 183315067 183315130 -44209448 + MLT1D LTR MaLR 2 65 -440 255 153 92 0 chr3 183315130 183315228 -44209350 + (TA)n Simple_repeat Simple_repeat 1 107 0 1356 242 52 29 chr3 183315295 183315679 -44208899 + MLT1D LTR MaLR 113 505 0 832 201 7 0 chr3 183315680 183315829 -44208749 - HERVL74 LTR ERVL -3919 1766 1617 5668 20 0 0 chr3 183315903 183316553 -44208025 - L1PA3 LINE L1 -1 6154 5505 444 273 115 92 chr3 183316561 183316710 -44207868 - L2 LINE L2 -2778 536 377 2412 91 3 0 chr3 183316710 183317018 -44207560 + AluSp SINE Alu 4 312 -1 444 273 115 92 chr3 183317018 183317128 -44207450 - L2 LINE L2 -2937 377 271 552 265 29 0 chr3 183317176 183317312 -44207266 + MLT1J LTR MaLR 3 142 -369 2427 173 79 5 chr3 183317408 183317853 -44206725 + MER66A LTR ERV1 1 478 0 2148 108 3 0 chr3 183317963 183318251 -44206327 + AluY SINE Alu 2 290 -21 217 246 18 0 chr3 183318497 183318554 -44206024 - L2 LINE L2 -3170 144 87 1999 233 99 42 chr3 183318774 183319359 -44205219 + L2 LINE L2 2084 2711 -603 1706 172 3 10 chr3 183319359 183319650 -44204928 + AluJo SINE Alu 1 289 -23 1999 233 99 42 chr3 183319650 183319711 -44204867 + L2 LINE L2 2711 2767 -547 372 144 62 52 chr3 183319711 183319808 -44204770 - Tigger5 DNA MER2_type -2225 98 1 1533 100 37 48 chr3 183319963 183320233 -44204345 + L1MB3 LINE L1 5865 6131 -52 1623 100 23 0 chr3 183320784 183321004 -44203574 + MER30 DNA MER1_type 1 225 -5 1330 87 0 6 chr3 183321167 183321339 -44203239 + AluSg/x SINE Alu 128 298 -12 308 320 119 27 chr3 183321346 183321565 -44203013 + L1MC4a LINE L1 5816 6054 -1754 21 0 0 0 chr3 183321724 183321745 -44202833 + AT_rich Low_complexity Low_complexity 1 21 0 542 255 28 14 chr3 183321814 183321955 -44202623 + MIR SINE MIR 113 255 -7 761 246 158 80 chr3 183322062 183322461 -44202117 + MLT1K LTR MaLR 149 578 -10 25 105 0 0 chr3 183322888 183322983 -44201595 + AT_rich Low_complexity Low_complexity 1 95 0 2027 56 4 0 chr3 183324287 183324536 -44200042 - AluSp SINE Alu -8 305 56 310 260 14 0 chr3 183326555 183326628 -44197950 + MARNA DNA Mariner 140 213 -373 577 200 159 0 chr3 183326838 183326983 -44197595 + MER58A DNA MER1_type 48 215 -9 2201 96 7 0 chr3 183326984 183327275 -44197303 + AluSc SINE Alu 1 293 -16 1154 224 49 52 chr3 183327412 183328132 -44196446 + L1MC/D LINE L1 4885 5596 -748 1526 148 9 0 chr3 183328655 183328884 -44195694 + AluJb SINE Alu 74 304 -8 189 107 0 0 chr3 183328884 183328912 -44195666 + (GGAA)n Simple_repeat Simple_repeat 1 28 0 2331 95 0 0 chr3 183329042 183329336 -44195242 + AluSg SINE Alu 1 294 -16 2182 115 0 20 chr3 183329540 183329844 -44194734 + AluSc SINE Alu 1 298 -11 2469 122 16 3 chr3 183330376 183330744 -44193834 + THE1C LTR MaLR 1 373 -2 5987 121 43 11 chr3 183330746 183331727 -44192851 + THE1C-int LTR MaLR 1 1012 -568 21 0 0 0 chr3 183331731 183331752 -44192826 + AT_rich Low_complexity Low_complexity 1 21 0 512 73 0 12 chr3 183331752 183331834 -44192744 + THE1C-int LTR MaLR 1500 1580 0 2517 101 2 56 chr3 183331834 183332230 -44192348 + THE1C LTR MaLR 1 375 0 842 234 21 16 chr3 183332287 183332475 -44192103 + MER5A DNA MER1_type 1 189 0 325 89 0 0 chr3 183332640 183332685 -44191893 - U7 snRNA snRNA -18 45 1 353 309 88 38 chr3 183333368 183333630 -44190948 + L2 LINE L2 158 432 -2882 864 295 104 21 chr3 183334202 183334684 -44189894 + L2 LINE L2 1978 2499 -815 196 339 0 0 chr3 183335292 183335354 -44189224 + L2 LINE L2 3252 3313 0 285 293 195 0 chr3 183335386 183335509 -44189069 + MIR3 SINE MIR 33 179 -29 21 36 0 0 chr3 183335660 183335688 -44188890 + AT_rich Low_complexity Low_complexity 1 28 0 2235 114 7 0 chr3 183335989 183336288 -44188290 + AluSq SINE Alu 1 301 -12 1717 187 18 3 chr3 183336801 183337084 -44187494 + AluJb SINE Alu 1 287 -25 29 114 0 0 chr3 183337084 183337128 -44187450 + AT_rich Low_complexity Low_complexity 1 44 0 2084 107 28 3 chr3 183337130 183337421 -44187157 + AluSq SINE Alu 2 299 -14 1121 146 5 0 chr3 183338624 183338816 -44185762 + L1PBa LINE L1 3 195 -6668 601 118 0 0 chr3 183338821 183338914 -44185664 + L1PBa LINE L1 636 728 -6135 2346 100 0 7 chr3 183338979 183339279 -44185299 - AluSx SINE Alu -14 298 1 246 128 0 0 chr3 183339703 183339742 -44184836 + (TTTTC)n Simple_repeat Simple_repeat 2 40 0 2269 107 3 0 chr3 183339915 183340215 -44184363 - AluSx SINE Alu -11 301 1 193 270 87 79 chr3 183341757 183341883 -44182695 + L2 LINE L2 3137 3263 -9 2274 97 7 3 chr3 183342557 183342856 -44181722 - AluSx SINE Alu -12 300 1 702 171 0 17 chr3 183347283 183347400 -44177178 - AluJb SINE Alu -195 117 3 2578 71 0 0 chr3 183347644 183347953 -44176625 - AluY SINE Alu -2 309 1 582 222 36 12 chr3 183349911 183350078 -44174500 - MER58 DNA MER1_type -2223 197 27 25 31 0 0 chr3 183350141 183350173 -44174405 + AT_rich Low_complexity Low_complexity 1 32 0 551 282 32 12 chr3 183350365 183350613 -44173965 - L1ME2 LINE L1 -10 6154 5902 445 253 36 16 chr3 183350615 183350809 -44173769 - L1M4 LINE L1 -3604 2542 2345 308 233 39 58 chr3 183351488 183351558 -44173020 + L2 LINE L2 2283 2353 -961 1863 133 22 0 chr3 183351558 183351879 -44172699 - AluSx SINE Alu 0 327 1 308 233 39 58 chr3 183351879 183351910 -44172668 + L2 LINE L2 2353 2383 -931 2522 214 27 8 chr3 183352046 183352551 -44172027 + MLT2B3 LTR ERVL 2 519 -35 507 33 0 0 chr3 183352551 183352612 -44171966 + (TCTA)n Simple_repeat Simple_repeat 2 62 0 2522 214 27 8 chr3 183352612 183352629 -44171949 + MLT2B3 LTR ERVL 519 534 -20 958 268 101 4 chr3 183352636 183353112 -44171466 + ERVL LTR ERVL 2 541 -5218 27 49 0 0 chr3 183353352 183353393 -44171185 + AT_rich Low_complexity Low_complexity 1 41 0 420 299 49 42 chr3 183353482 183353746 -44170832 - L2 LINE L2 0 3313 3048 436 255 70 87 chr3 183353786 183354215 -44170363 + MER21B LTR ERV1 160 598 -7 610 207 22 53 chr3 183354390 183354682 -44169896 - MER52A LTR ERV1 -1388 367 1 1648 193 81 28 chr3 183354683 183355077 -44169501 - HUERS-P2 LTR ERV1 -2 3086 2672 1313 178 0 4 chr3 183355092 183355328 -44169250 - MER61-int LTR ERV1 -1299 3918 3684 1258 159 0 12 chr3 183355325 183355570 -44169008 - MER61-int LTR ERV1 -2453 2764 2523 * 565 134 0 31 chr3 183355676 183355773 -44168805 + THE1B LTR MaLR 271 364 0 1566 228 43 18 chr3 183356352 183356862 -44167716 - Charlie1b DNA MER1_type 0 523 1 1756 169 14 21 chr3 183358272 183358556 -44166022 + AluJo SINE Alu 1 282 -30 234 0 0 0 chr3 183358559 183358585 -44165993 + (TA)n Simple_repeat Simple_repeat 2 27 0 406 218 69 4 chr3 183360787 183360990 -44163588 - MER5C DNA MER1_type 0 324 39 2369 93 0 3 chr3 183361282 183361582 -44162996 + AluSx SINE Alu 1 299 -13 648 263 78 15 chr3 183363918 183364123 -44160455 + L2 LINE L2 2504 2721 -593 * 1849 271 53 61 chr3 183364122 183364543 -44160035 - L2 LINE L2 -422 2892 2478 2461 70 0 0 chr3 183364543 183364842 -44159736 + AluSg SINE Alu 1 299 -11 1849 271 53 61 chr3 183364842 183365142 -44159436 - L2 LINE L2 -836 2478 2177 960 281 150 11 chr3 183365143 183365524 -44159054 - L2 LINE L2 -2335 979 546 579 313 0 11 chr3 183365549 183365814 -44158764 + L1M4 LINE L1 3535 3796 -2350 358 175 16 0 chr3 183365814 183365877 -44158701 + MLT1D LTR MaLR 2 65 -440 255 153 92 0 chr3 183365877 183365975 -44158603 + (TA)n Simple_repeat Simple_repeat 1 107 0 1236 242 52 29 chr3 183366042 183366426 -44158152 + MLT1D LTR MaLR 113 505 0 783 201 7 0 chr3 183366427 183366576 -44158002 - HERVL74 LTR ERVL -3919 1766 1617 5677 20 0 0 chr3 183366650 183367300 -44157278 - L1PA3 LINE L1 -1 6154 5505 470 291 112 81 chr3 183367308 183367455 -44157123 - L2 LINE L2 -2778 536 376 2432 93 3 0 chr3 183367455 183367766 -44156812 + AluSp SINE Alu 1 312 -1 470 291 112 81 chr3 183367766 183367876 -44156702 - L2 LINE L2 -2938 376 271 508 265 29 0 chr3 183367924 183368060 -44156518 + MLT1J LTR MaLR 3 142 -369 2429 173 79 5 chr3 183368156 183368601 -44155977 + MER66A LTR ERV1 1 478 0 2152 108 3 0 chr3 183368711 183368999 -44155579 + AluY SINE Alu 2 290 -21 220 246 18 0 chr3 183369245 183369302 -44155276 - L2 LINE L2 -3170 144 87 2023 233 99 42 chr3 183369522 183370107 -44154471 + L2 LINE L2 2084 2711 -603 1728 172 3 10 chr3 183370107 183370398 -44154180 + AluJo SINE Alu 1 289 -23 2023 233 99 42 chr3 183370398 183370461 -44154117 + L2 LINE L2 2711 2769 -545 336 137 63 53 chr3 183370461 183370556 -44154022 - Tigger5 DNA MER2_type -2227 96 1 1442 100 37 48 chr3 183370711 183370981 -44153597 + L1MB3 LINE L1 5865 6131 -52 1542 100 23 0 chr3 183371532 183371752 -44152826 + MER30 DNA MER1_type 1 225 -5 1336 87 0 6 chr3 183371915 183372087 -44152491 + AluSg/x SINE Alu 130 300 -12 308 320 119 27 chr3 183372094 183372313 -44152265 + L1MC4a LINE L1 5816 6054 -1754 21 0 0 0 chr3 183372472 183372493 -44152085 + AT_rich Low_complexity Low_complexity 1 21 0 533 255 28 14 chr3 183372562 183372703 -44151875 + MIR SINE MIR 113 255 -7 641 248 158 80 chr3 183372810 183373209 -44151369 + MLT1K LTR MaLR 149 578 -10 25 105 0 0 chr3 183373636 183373731 -44150847 + AT_rich Low_complexity Low_complexity 1 95 0 2037 56 4 0 chr3 183375036 183375285 -44149293 - AluSp SINE Alu -8 305 56 1828 163 21 0 chr3 183384590 183384878 -44139700 + AluJb SINE Alu 1 294 -18 23 0 0 0 chr3 183384892 183384915 -44139663 + AT_rich Low_complexity Low_complexity 1 23 0 2442 31 3 3 chr3 183386326 183386612 -44137966 + AluY SINE Alu 23 308 -3 1691 171 0 31 chr3 183387109 183387402 -44137176 + AluJo SINE Alu 6 289 -23 1097 204 4 36 chr3 183387440 183387665 -44136913 + MER20 DNA MER1_type 1 218 -1 874 115 0 0 chr3 183389911 183390024 -44134554 + FLAM_C SINE Alu 13 125 -18 321 130 0 37 chr3 183390049 183390103 -44134475 + 7SK RNA RNA 2 53 -140 796 199 45 6 chr3 183390272 183390428 -44134150 - AluJb SINE Alu -24 288 127 812 173 0 0 chr3 183390462 183390595 -44133983 - FLAM_C SINE Alu -2 141 9 25 0 0 0 chr3 183391319 183391344 -44133234 + AT_rich Low_complexity Low_complexity 1 25 0 593 226 105 8 chr3 183392053 183392186 -44132392 - FRAM SINE Alu -30 146 1 1283 220 37 4 chr3 183392409 183392682 -44131896 + AluJo SINE Alu 1 282 -30 271 320 160 11 chr3 183394102 183394283 -44130295 + MIR SINE MIR 9 216 -46 691 191 7 29 chr3 183397143 183397279 -44127299 + FLAM_A SINE Alu 1 133 0 283 310 80 9 chr3 183397310 183397423 -44127155 - LTR33 LTR ERVL -78 443 323 313 293 107 21 chr3 183397431 183397571 -44127007 - LTR33 LTR ERVL -313 208 57 2350 68 3 3 chr3 183398253 183398546 -44126032 - AluY SINE Alu -18 293 1 2183 98 0 0 chr3 183398781 183399055 -44125523 + AluSg SINE Alu 1 274 -36 3984 173 100 18 chr3 183399074 183400682 -44123896 - L1MB7 LINE L1 -50 6134 4398 2117 71 0 11 chr3 183401844 183402112 -44122466 + AluSg SINE Alu 1 265 -45 285 29 0 0 chr3 183402337 183402371 -44122207 + (TG)n Simple_repeat Simple_repeat 2 35 0 241 323 134 5 chr3 183402962 183403148 -44121430 - L1ME LINE L1 -422 5699 5490 374 235 250 29 chr3 183403651 183403787 -44120791 - MIR SINE MIR -94 168 3 21 36 0 0 chr3 183403911 183403939 -44120639 + AT_rich Low_complexity Low_complexity 1 28 0 282 292 42 0 chr3 183404470 183404542 -44120036 - L2 LINE L2 -27 3286 3212 380 308 111 23 chr3 183404542 183404714 -44119864 - L2 LINE L2 -260 3053 2867 1574 152 34 15 chr3 183405122 183405248 -44119330 + AluSx SINE Alu 1 123 -189 231 88 0 0 chr3 183405248 183405282 -44119296 + (CA)n Simple_repeat Simple_repeat 2 35 0 1574 152 34 15 chr3 183405282 183405419 -44119159 + AluSx SINE Alu 123 269 -43 1853 172 0 10 chr3 183406661 183406964 -44117614 - AluJb SINE Alu -12 300 1 2375 86 7 0 chr3 183407029 183407332 -44117246 - AluSg SINE Alu -5 305 1 2173 90 0 7 chr3 183409237 183409527 -44115051 + AluSg SINE Alu 1 288 -22 277 259 0 0 chr3 183411767 183411821 -44112757 + Tigger5 DNA MER2_type 2 55 -2268 415 165 89 0 chr3 183411831 183411910 -44112668 + Tigger5 DNA MER2_type 2237 2322 -1 22 35 0 0 chr3 183412381 183412410 -44112168 + AT_rich Low_complexity Low_complexity 1 29 0 1772 155 28 0 chr3 183412430 183412720 -44111858 - AluSx SINE Alu -14 298 1 381 262 255 0 chr3 183413120 183413269 -44111309 + MIR SINE MIR 15 201 -61 2399 120 0 0 chr3 183413832 183414141 -44110437 + AluY SINE Alu 1 309 -2 1562 173 14 28 chr3 183414385 183414674 -44109904 + AluJb SINE Alu 3 287 -25 2115 114 65 31 chr3 183416792 183417144 -44107434 + THE1B LTR MaLR 1 364 0 2064 127 10 0 chr3 183417946 183418238 -44106340 + AluSp SINE Alu 1 295 -18 214 211 122 102 chr3 183418432 183418579 -44105999 + L2 LINE L2 3078 3227 -86 2317 99 0 3 chr3 183418788 183419100 -44105478 + AluY SINE Alu 1 311 0 1180 114 175 48 chr3 183419659 183419887 -44104691 + AluSg1 SINE Alu 44 300 -9 1750 171 3 20 chr3 183420152 183420451 -44104127 + AluJb SINE Alu 1 294 -18 319 225 43 82 chr3 183420645 183420962 -44103616 + HAL1 LINE L1 1509 1887 -620 2118 83 0 7 chr3 183420962 183421239 -44103339 - AluY SINE Alu -19 292 18 319 225 43 82 chr3 183421239 183421311 -44103267 + HAL1 LINE L1 1887 1960 -547 309 220 83 38 chr3 183421349 183421481 -44103097 + HAL1 LINE L1 2074 2211 -296 266 257 118 7 chr3 183421487 183421631 -44102947 + HAL1 LINE L1 2243 2402 -105 602 260 59 46 chr3 183421789 183422077 -44102501 + MLT1H LTR MaLR 3 299 -250 285 258 11 0 chr3 183422182 183422271 -44102307 + HAL1b LINE L1 428 517 -831 207 219 0 0 chr3 183422406 183422447 -44102131 + A-rich Low_complexity Low_complexity 1 41 0 1903 155 0 25 chr3 183422449 183422766 -44101812 + AluJb SINE Alu 1 309 -3 2168 118 0 0 chr3 183422808 183423096 -44101482 + AluSx SINE Alu 1 288 -24 1558 179 0 4 chr3 183423226 183423489 -44101089 - AluJo SINE Alu -50 262 1 1182 182 68 0 chr3 183423784 183424004 -44100574 - MER46A DNA MER2_type -1 235 1 2199 110 0 0 chr3 183424139 183424461 -44100117 - AluSx SINE Alu 0 322 1 1426 132 158 38 chr3 183424624 183424890 -44099688 + AluSx SINE Alu 6 303 -9 1750 171 3 20 chr3 183425155 183425454 -44099124 + AluJb SINE Alu 1 294 -18 319 225 43 82 chr3 183425648 183425965 -44098613 + HAL1 LINE L1 1509 1887 -620 2118 83 0 7 chr3 183425965 183426242 -44098336 - AluY SINE Alu -19 292 18 319 225 43 82 chr3 183426242 183426314 -44098264 + HAL1 LINE L1 1887 1960 -547 309 220 83 38 chr3 183426352 183426484 -44098094 + HAL1 LINE L1 2074 2211 -296 330 274 14 0 chr3 183426561 183426634 -44097944 + HAL1 LINE L1 2329 2402 -105 602 260 59 46 chr3 183426792 183427080 -44097498 + MLT1H LTR MaLR 3 299 -250 261 258 11 0 chr3 183427185 183427274 -44097304 + HAL1b LINE L1 428 517 -831 207 219 0 0 chr3 183427409 183427450 -44097128 + A-rich Low_complexity Low_complexity 1 41 0 1598 141 17 4 chr3 183427452 183427693 -44096885 + AluJb SINE Alu 1 244 -68 8083 40 0 0 chr3 183427832 183428869 -44095709 + L1P LINE L1 3651 4687 -1459 262 277 0 59 chr3 183429537 183429638 -44094940 + CT-rich Low_complexity Low_complexity 2 96 0 331 358 20 25 chr3 183429685 183429906 -44094672 + CT-rich Low_complexity Low_complexity 1 219 0 251 306 28 9 chr3 183429863 183429971 -44094607 + T-rich Low_complexity Low_complexity 4 113 0 * 247 282 0 0 chr3 183430082 183430160 -44094418 + L2 LINE L2 2633 2710 -604 282 103 0 0 chr3 183430168 183430207 -44094371 + tRNA-Ile-ATT tRNA tRNA 1 39 -38 2112 108 13 3 chr3 183430386 183430692 -44093886 - AluSp SINE Alu -4 309 1 698 271 96 4 chr3 183430697 183430926 -44093652 + L2 LINE L2 2892 3141 -172 240 91 0 0 chr3 183430926 183430959 -44093619 - Alu SINE Alu -270 33 1 1176 98 0 0 chr3 183430974 183431127 -44093451 + AluSg/x SINE Alu 154 306 -6 195 322 98 23 chr3 183431348 183431522 -44093056 + L2 LINE L2 2462 2648 -666 1658 225 82 77 chr3 183431541 183431833 -44092745 - L2 LINE L2 -270 3043 2754 2320 107 7 3 chr3 183431833 183432142 -44092436 - AluSg SINE Alu 0 310 1 1658 225 82 77 chr3 183432142 183432494 -44092084 - L2 LINE L2 -559 2754 2403 13827 212 25 19 chr3 183432552 183434937 -44089641 - L1PA16 LINE L1 -302 7302 4933 2024 130 0 34 chr3 183434937 183434957 -44089621 - AluSx SINE Alu 0 312 293 234 0 0 0 chr3 183434957 183434983 -44089595 + (ATG)n Simple_repeat Simple_repeat 2 27 0 2024 130 0 34 chr3 183434983 183435285 -44089293 - AluSx SINE Alu -19 293 1 13827 212 25 19 chr3 183435285 183436009 -44088569 - L1PA16 LINE L1 -2671 4933 4215 596 51 0 13 chr3 183436009 183436087 -44088491 - MADE1 DNA Mariner 0 80 4 13827 212 25 19 chr3 183436087 183438072 -44086506 - L1PA16 LINE L1 -3389 4215 2182 739 321 30 8 chr3 183438885 183439284 -44085294 - L1PA16 LINE L1 -7167 414 7 624 95 54 0 chr3 183439290 183439395 -44085183 - LTR54B LTR ERV1 -400 110 1 * 3022 128 24 0 chr3 183439395 183439854 -44084724 + MER1A DNA MER1_type 60 529 0 521 118 24 12 chr3 183440031 183440116 -44084462 - 5S rRNA rRNA -31 90 5 259 220 15 114 chr3 183440122 183440174 -44084404 - L1M4 LINE L1 -3887 2259 2203 2161 111 3 0 chr3 183440174 183440462 -44084116 - AluSq SINE Alu -20 293 5 259 220 15 114 chr3 183440462 183440541 -44084037 - L1M4 LINE L1 -3943 2203 2141 316 326 87 12 chr3 183440554 183440637 -44083941 - L1M4 LINE L1 -1604 4542 4467 1727 162 34 7 chr3 183440637 183440934 -44083644 - AluSg SINE Alu -5 305 1 316 326 87 12 chr3 183440934 183441022 -44083556 - L1M4 LINE L1 -1679 4467 4358 476 301 17 39 chr3 183441308 183441405 -44083173 - L1M4 LINE L1 -1931 4215 4117 2325 94 0 10 chr3 183441405 183441703 -44082875 - AluSc SINE Alu -14 295 1 476 301 17 39 chr3 183441703 183441964 -44082614 - L1M4 LINE L1 -2029 4117 3865 661 274 94 16 chr3 183442166 183442421 -44082157 + L2 LINE L2 2953 3227 -86 6980 237 78 31 chr3 183442514 183442842 -44081736 + Charlie2a DNA MER1_type 53 364 -2498 1984 131 3 26 chr3 183442842 183443154 -44081424 - AluSq SINE Alu -8 305 1 6980 237 78 31 chr3 183443154 183443463 -44081115 + Charlie2a DNA MER1_type 364 657 -2205 2193 211 78 34 chr3 183443463 183444031 -44080547 - MLT1E LTR MaLR 0 593 1 6980 237 78 31 chr3 183444031 183444283 -44080295 + Charlie2a DNA MER1_type 657 896 -1966 2235 107 3 0 chr3 183444283 183444573 -44080005 + AluSp SINE Alu 1 291 -22 360 0 0 0 chr3 183444576 183444616 -44079962 + (CA)n Simple_repeat Simple_repeat 2 41 0 6980 237 78 31 chr3 183444616 183444895 -44079683 + Charlie2a DNA MER1_type 897 1162 -1700 7040 49 13 0 chr3 183444895 183445939 -44078639 - L1PA7 LINE L1 -3 6151 5100 6980 237 78 31 chr3 183445939 183446713 -44077865 + Charlie2a DNA MER1_type 1162 1898 -964 2220 106 7 0 chr3 183446713 183447005 -44077573 - AluSp SINE Alu -19 294 1 6980 237 78 31 chr3 183447005 183447711 -44076867 + Charlie2a DNA MER1_type 1898 2833 -29 972 218 19 29 chr3 183448390 183448766 -44075812 + MLT1C LTR MaLR 9 467 0 220 290 16 0 chr3 183448799 183448861 -44075717 + MIR SINE MIR 63 125 -137 1336 213 63 22 chr3 183449025 183449439 -44075139 + LTR37B LTR ERV1 38 468 0 675 149 41 0 chr3 183450489 183450610 -44073968 - L1M3 LINE L1 -385 5786 5661 875 73 24 0 chr3 183450610 183450733 -44073845 - L1PA11 LINE L1 -2 6172 6047 22 0 0 0 chr3 183450840 183450862 -44073716 + AT_rich Low_complexity Low_complexity 1 22 0 323 279 58 10 chr3 183451012 183451116 -44073462 - L2 LINE L2 0 3272 3164 467 270 62 52 chr3 183451395 183451606 -44072972 + LTR33 LTR ERVL 1 213 -308 622 209 128 12 chr3 183451657 183451829 -44072749 + LTR33 LTR ERVL 328 519 -2 771 56 0 9 chr3 183451916 183452024 -44072554 - L1MA1 LINE L1 0 6302 6196 253 285 17 28 chr3 183452036 183452215 -44072363 + (TGAA)n Simple_repeat Simple_repeat 1 177 0 286 269 62 39 chr3 183453084 183453214 -44071364 + L1ME LINE L1 5633 5765 -356 548 299 89 23 chr3 183453243 183453457 -44071121 - MIR SINE MIR -34 228 1 604 355 78 53 chr3 183453759 183454942 -44069636 - HERV16 LTR ERVL -3423 1573 362 326 313 33 30 chr3 183455441 183455661 -44068917 + L1ME LINE L1 5330 5550 -581 437 319 29 33 chr3 183455719 183455960 -44068618 + L1ME LINE L1 5553 5792 -329 21 0 0 0 chr3 183456228 183456249 -44068329 + AT_rich Low_complexity Low_complexity 1 21 0 299 222 12 62 chr3 183456483 183456564 -44068014 - L2 LINE L2 0 3272 3196 299 222 12 62 chr3 183457513 183457594 -44066984 - L2 LINE L2 0 3272 3196 530 157 101 0 chr3 183458059 183458148 -44066430 - AluJ SINE Alu -25 287 190 * 774 192 20 14 chr3 183458146 183458292 -44066286 - AluJ SINE Alu -165 147 1 23 0 0 0 chr3 183459518 183459541 -44065037 + AT_rich Low_complexity Low_complexity 1 23 0 993 188 132 16 chr3 183459541 183459860 -44064718 - LTR37A LTR ERV1 -21 405 50 242 125 153 28 chr3 183460153 183460225 -44064353 - MER53 DNA DNA 0 189 109 278 323 86 30 chr3 183460880 183461078 -44063500 - L2 LINE L2 -729 2585 2377 186 241 0 56 chr3 183461433 183461487 -44063091 + L2 LINE L2 3263 3313 0 32 0 0 0 chr3 183462276 183462308 -44062270 + AT_rich Low_complexity Low_complexity 1 32 0 487 285 104 72 chr3 183462879 183463394 -44061184 - L2 LINE L2 -234 3079 2476 380 241 160 21 chr3 183463466 183463653 -44060925 + MER65B LTR ERV1 1 213 -318 333 109 129 69 chr3 183463886 183463987 -44060591 + LTR37A LTR ERV1 319 425 -1 251 272 62 0 chr3 183463988 183464069 -44060509 - L2 LINE L2 -1467 1847 1762 208 222 19 19 chr3 183464634 183464688 -44059890 - MIR SINE MIR -114 148 95 184 309 48 0 chr3 183464774 183464858 -44059720 + MIR SINE MIR 125 212 -50 24 32 0 0 chr3 183465594 183465625 -44058953 + AT_rich Low_complexity Low_complexity 1 31 0 359 253 0 0 chr3 183465631 183465710 -44058868 + MLT1I LTR MaLR 20 98 -311 11060 135 19 8 chr3 183465829 183467662 -44056916 - Tigger1 DNA MER2_type -566 1852 1 1410 194 135 46 chr3 183467729 183468182 -44056396 - MLT1D LTR MaLR -12 493 1 492 183 11 0 chr3 183468284 183468377 -44056201 + MER94 DNA DNA 1 94 -40 358 201 93 147 chr3 183468953 183469157 -44055421 - L1MC4 LINE L1 -838 7204 7012 2223 106 0 0 chr3 183469186 183469478 -44055100 - AluSx SINE Alu -16 296 5 1964 155 0 7 chr3 183469486 183469789 -44054789 - AluSx SINE Alu -10 302 2 1146 203 60 0 chr3 183469789 183470070 -44054508 - L1MC4 LINE L1 -1026 7016 6719 1512 269 35 18 chr3 183470087 183470652 -44053926 - L1MC4 LINE L1 -1980 5828 5254 26 30 0 0 chr3 183470665 183470698 -44053880 + AT_rich Low_complexity Low_complexity 1 33 0 267 254 0 32 chr3 183471090 183471153 -44053425 + L2 LINE L2 3248 3308 -5 324 310 52 61 chr3 183471298 183471444 -44053134 + L1ME4a LINE L1 5777 5922 -199 1980 126 82 0 chr3 183471444 183471808 -44052770 + L1MA8 LINE L1 5898 6291 0 324 310 52 61 chr3 183471808 183471890 -44052688 + L1ME4a LINE L1 5922 6003 -118 2302 114 0 9 chr3 183472045 183472360 -44052218 - AluSq SINE Alu -1 312 1 468 269 41 14 chr3 183472523 183472668 -44051910 + MIR SINE MIR 111 259 -3 272 167 0 0 chr3 183472887 183472941 -44051637 - L1ME4a LINE L1 -8 6113 6060 1964 108 0 0 chr3 183473311 183473570 -44051008 + AluY SINE Alu 1 259 -52 226 216 40 40 chr3 183473600 183473674 -44050904 + L1MC4 LINE L1 7210 7283 -759 1684 127 4 0 chr3 183473702 183473961 -44050617 - MER2 DNA MER2_type -85 260 1 474 223 6 115 chr3 183473967 183474124 -44050454 - MER5A DNA MER1_type -40 149 10 1367 257 106 44 chr3 183474124 183474938 -44049640 + L1MC4 LINE L1 7012 7875 -167 234 128 0 0 chr3 183474988 183475027 -44049551 + (GA)n Simple_repeat Simple_repeat 2 40 0 205 161 0 0 chr3 183475120 183475151 -44049427 + (TG)n Simple_repeat Simple_repeat 2 32 0 222 174 0 0 chr3 183475162 183475208 -44049370 + GA-rich Low_complexity Low_complexity 1 46 0 318 285 24 8 chr3 183475364 183475487 -44049091 + L1MC4 LINE L1 7918 8042 0 292 219 0 0 chr3 183475684 183475748 -44048830 - MLT1J2 LTR MaLR -34 416 353 226 281 177 0 chr3 183475749 183475845 -44048733 - MIR SINE MIR -128 134 22 598 283 297 13 chr3 183476028 183476173 -44048405 - L2 LINE L2 -1 3312 3210 2477 91 0 0 chr3 183476173 183476481 -44048097 + AluSg SINE Alu 1 308 -2 598 283 297 13 chr3 183476481 183477004 -44047574 - L2 LINE L2 -103 3210 2433 2054 90 21 3 chr3 183477119 183477408 -44047170 - AluSc SINE Alu -15 294 1 243 0 0 0 chr3 183477410 183477437 -44047141 + (TG)n Simple_repeat Simple_repeat 2 28 0 256 231 11 55 chr3 183477479 183477570 -44047008 + MIR SINE MIR 120 206 -56 215 209 0 0 chr3 183477762 183477805 -44046773 + (TCTCTG)n Simple_repeat Simple_repeat 6 48 0 36 94 0 0 chr3 183478041 183478147 -44046431 + GC_rich Low_complexity Low_complexity 1 106 0 689 254 153 16 chr3 183478310 183478499 -44046079 - MIR SINE MIR -27 235 21 474 266 29 75 chr3 183478526 183478767 -44045811 - L2 LINE L2 -376 2938 2709 1003 164 200 33 chr3 183478808 183479138 -44045440 + Charlie4a DNA MER1_type 14 398 -110 310 266 51 0 chr3 183479143 183479222 -44045356 - L1MC4 LINE L1 -1346 6696 6614 402 204 23 0 chr3 183479240 183479328 -44045250 + Charlie4a DNA MER1_type 418 507 -1 1525 221 71 16 chr3 183479331 183479697 -44044881 - L2 LINE L2 -616 2698 2313 240 216 20 78 chr3 183480391 183480493 -44044085 + L1ME4a LINE L1 5964 6059 -62 216 0 0 0 chr3 183481409 183481433 -44043145 + (T)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr3 183481745 183481767 -44042811 + AT_rich Low_complexity Low_complexity 1 22 0 1543 82 10 0 chr3 183482312 183482507 -44042071 + AluSq SINE Alu 1 197 -116 2400 89 0 0 chr3 183482594 183482896 -44041682 - AluSg1 SINE Alu -7 302 1 188 295 77 39 chr3 183483113 183483191 -44041387 - L3 LINE CR1 -5 1572 1492 1014 218 42 54 chr3 183483488 183483819 -44040759 + Charlie1a DNA MER1_type 2 328 -1127 189 339 0 17 chr3 183483879 183483938 -44040640 - L2 LINE L2 -20 3293 3236 2003 134 0 7 chr3 183484008 183484300 -44040278 + AluSx SINE Alu 1 290 -22 257 267 17 0 chr3 183484781 183484841 -44039737 + L2 LINE L2 3156 3216 -56 2180 110 3 0 chr3 183485242 183485534 -44039044 + AluSx SINE Alu 1 293 -19 21 57 0 0 chr3 183485588 183485623 -44038955 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr3 183485880 183485907 -44038671 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr3 183486563 183486584 -44037994 + AT_rich Low_complexity Low_complexity 1 21 0 1787 172 3 34 chr3 183486827 183487147 -44037431 - AluJb SINE Alu -2 310 1 2503 66 0 19 chr3 183487169 183487486 -44037092 - AluY SINE Alu 0 311 1 25 0 0 0 chr3 183488073 183488098 -44036480 + AT_rich Low_complexity Low_complexity 1 25 0 1676 179 0 20 chr3 183488100 183488397 -44036181 + AluJb SINE Alu 1 291 -21 2126 137 0 0 chr3 183488668 183488967 -44035611 + AluSx SINE Alu 1 299 -13 561 215 50 8 chr3 183490659 183490780 -44033798 - MER5A DNA MER1_type 0 189 64 22 0 0 0 chr3 183491431 183491453 -44033125 + AT_rich Low_complexity Low_complexity 1 22 0 189 74 0 0 chr3 183491553 183491580 -44032998 + (TATG)n Simple_repeat Simple_repeat 2 28 0 30 45 0 0 chr3 183491666 183491710 -44032868 + AT_rich Low_complexity Low_complexity 1 44 0 1936 147 3 7 chr3 183492690 183493002 -44031576 + AluJb SINE Alu 1 311 0 2173 109 0 10 chr3 183493464 183493766 -44030812 - AluSg SINE Alu -11 299 1 857 140 0 7 chr3 183494009 183494145 -44030433 - AluJb SINE Alu -177 135 1 2619 45 0 3 chr3 183494576 183494890 -44029688 + AluYb8 SINE Alu 1 313 -5 2094 116 3 39 chr3 183495313 183495624 -44028954 - AluSc SINE Alu -9 300 1 242 301 105 42 chr3 183495692 183495835 -44028743 - MER5A DNA MER1_type -4 185 34 24 32 0 0 chr3 183496078 183496109 -44028469 + AT_rich Low_complexity Low_complexity 1 31 0 224 246 15 15 chr3 183496231 183496296 -44028282 + GA-rich Low_complexity Low_complexity 2 66 0 1685 193 7 14 chr3 183496380 183496675 -44027903 + AluSx SINE Alu 1 293 -19 1422 134 0 5 chr3 183497525 183497734 -44026844 - AluJb SINE Alu -16 296 89 1685 193 7 14 chr3 183498428 183498723 -44025855 - AluSx SINE Alu -19 293 1 224 246 15 15 chr3 183498807 183498872 -44025706 + CT-rich Low_complexity Low_complexity 2 66 0 24 32 0 0 chr3 183498994 183499025 -44025553 + AT_rich Low_complexity Low_complexity 1 31 0 242 301 105 42 chr3 183499268 183499411 -44025167 + MER5A DNA MER1_type 34 185 -4 2094 116 3 39 chr3 183499479 183499790 -44024788 + AluSc SINE Alu 1 300 -9 2413 78 0 22 chr3 183500213 183500533 -44024045 - AluYb8 SINE Alu -5 313 1 245 311 178 0 chr3 183501255 183501345 -44023233 - L2 LINE L2 -18 3295 3190 435 196 15 36 chr3 183501721 183501872 -44022706 + L1MB8 LINE L1 6022 6183 -1 300 53 0 0 chr3 183501879 183501917 -44022661 + (CA)n Simple_repeat Simple_repeat 2 39 0 224 283 192 10 chr3 183501973 183502072 -44022506 - L2 LINE L2 -3 3269 3153 196 269 84 84 chr3 183502284 183502403 -44022175 - L2 LINE L2 -299 2973 2855 23 54 0 0 chr3 183503131 183503168 -44021410 + AT_rich Low_complexity Low_complexity 1 37 0 323 288 153 0 chr3 183503450 183503561 -44021017 + MIR3 SINE MIR 50 177 -31 1849 157 28 0 chr3 183503581 183503867 -44020711 - AluSx SINE Alu -18 294 1 2101 128 0 0 chr3 183504096 183504392 -44020186 - AluSq SINE Alu -17 296 1 266 142 33 0 chr3 183504754 183504811 -44019767 + Alu SINE Alu 250 294 -7 268 302 81 0 chr3 183505166 183505252 -44019326 - MIR3 SINE MIR -5 203 111 1747 273 205 28 chr3 183505568 183506470 -44018108 - L2 LINE L2 -3 3310 2015 2040 145 0 0 chr3 183506470 183506767 -44017811 + AluSx SINE Alu 1 297 -15 1747 273 205 28 chr3 183506767 183506863 -44017715 - L2 LINE L2 -1298 2015 1937 4475 126 77 6 chr3 183507656 183508445 -44016133 - L1MC1 LINE L1 -19 6314 5470 250 123 0 62 chr3 183508466 183508531 -44016047 - L1MB4 LINE L1 -9 6171 6111 7741 187 56 11 chr3 183508534 183510508 -44014070 - L1MB2 LINE L1 -7 6164 4025 1397 184 37 34 chr3 183510508 183510802 -44013776 - AluJo SINE Alu -17 295 1 7741 187 56 11 chr3 183510802 183511499 -44013079 - L1MB2 LINE L1 -2146 4025 3361 221 317 42 35 chr3 183511949 183512091 -44012487 - L2 LINE L2 -496 2818 2676 1234 125 22 54 chr3 183512093 183512317 -44012261 + MER20 DNA MER1_type 2 218 -1 410 153 0 0 chr3 183512508 183512580 -44011998 + L1PB4 LINE L1 6073 6144 -12 520 329 80 69 chr3 183512668 183513305 -44011273 - L2 LINE L2 -5 3267 2625 220 268 299 0 chr3 183514198 183514295 -44010283 + L2 LINE L2 3188 3313 0 1343 169 16 0 chr3 183514426 183514681 -44009897 - L1MB7 LINE L1 -3 6181 5923 3905 181 68 9 chr3 183514681 183515470 -44009108 + MER21B LTR ERV1 1 836 -27 501 175 21 0 chr3 183515522 183515619 -44008959 - L1MB7 LINE L1 -252 5926 5828 1615 149 32 36 chr3 183515619 183515928 -44008650 - MER44D DNA MER2_type 0 609 32 1962 141 37 98 chr3 183515944 183516065 -44008513 - L1MB7 LINE L1 -355 5829 5702 2168 96 3 10 chr3 183516065 183516366 -44008212 - AluSp SINE Alu -14 299 1 1962 141 37 98 chr3 183516366 183516734 -44007844 - L1MB7 LINE L1 -482 5702 5370 1264 149 50 0 chr3 183516753 183516974 -44007604 - MER46A DNA MER2_type -4 232 1 695 200 0 0 chr3 183517170 183517285 -44007293 - AluJo SINE Alu -134 178 64 1658 190 0 28 chr3 183517923 183518212 -44006366 - AluJo SINE Alu -29 283 3 325 246 91 36 chr3 183518702 183518812 -44005766 - MIR SINE MIR -142 120 5 4130 177 68 77 chr3 183518882 183520138 -44004440 + Charlie1a DNA MER1_type 2 1246 -209 208 313 0 0 chr3 183520304 183520352 -44004226 - L2 LINE L2 -15 3257 3210 282 283 232 11 chr3 183522121 183522298 -44002280 - MIR SINE MIR -34 228 13 836 180 42 11 chr3 183522355 183522568 -44002010 + MER33 DNA MER1_type 1 214 -90 2545 160 67 35 chr3 183523187 183523781 -44000797 + L1MB8 LINE L1 5566 6178 0 456 158 158 14 chr3 183523781 183523920 -44000658 + MER69 DNA AcHobo 2256 2414 -112 340 321 44 105 chr3 183525070 183525612 -43998966 + L1M2 LINE L1 756 1264 -5585 21 0 0 0 chr3 183526707 183526728 -43997850 + AT_rich Low_complexity Low_complexity 1 21 0 560 303 40 13 chr3 183527733 183527885 -43996693 + L2 LINE L2 3116 3271 -1 1321 220 53 20 chr3 183530196 183530537 -43994041 - MLT1A1 LTR MaLR -12 353 2 2226 121 7 0 chr3 183531032 183531337 -43993241 - AluSg SINE Alu -3 307 1 1960 142 0 7 chr3 183531734 183532023 -43992555 - AluSx SINE Alu -25 287 1 782 214 6 0 chr3 183532189 183532362 -43992216 - L1MD2 LINE L1 -10 6349 6176 887 209 60 0 chr3 183532626 183532841 -43991737 + L1MB7 LINE L1 5938 6165 -19 1899 147 34 0 chr3 183533017 183533309 -43991269 - AluJb SINE Alu -10 302 1 282 255 229 26 chr3 183533347 183533500 -43991078 + L2 LINE L2 3109 3292 -21 2071 115 3 20 chr3 183533515 183533811 -43990767 + AluSx SINE Alu 1 291 -21 2045 145 0 0 chr3 183533892 183534188 -43990390 + AluJb SINE Alu 1 296 -16 453 246 104 8 chr3 183536031 183536165 -43988413 - MIR SINE MIR -44 218 72 1974 165 0 29 chr3 183536242 183536557 -43988021 + AluJb SINE Alu 1 306 -6 704 243 34 111 chr3 183536803 183536956 -43987622 - L1MC4 LINE L1 -736 7225 7062 1615 128 21 0 chr3 183536956 183537198 -43987380 - AluSx SINE Alu -7 305 59 704 243 34 111 chr3 183537198 183537717 -43986861 - L1MC4 LINE L1 -899 7062 6646 32 0 0 0 chr3 183538066 183538098 -43986480 + AT_rich Low_complexity Low_complexity 1 32 0 344 282 38 0 chr3 183538268 183538399 -43986179 - L1MC4 LINE L1 -1979 5829 5694 2668 7 0 26 chr3 183538401 183538706 -43985872 + AluY SINE Alu 1 297 -14 4009 197 35 17 chr3 183538706 183539870 -43984708 + L1MB7 LINE L1 4989 6165 -19 1899 147 34 0 chr3 183540046 183540338 -43984240 - AluJb SINE Alu -10 302 1 282 255 229 26 chr3 183540376 183540529 -43984049 + L2 LINE L2 3109 3292 -21 2071 115 3 20 chr3 183540544 183540840 -43983738 + AluSx SINE Alu 1 291 -21 2045 145 0 0 chr3 183540921 183541217 -43983361 + AluJb SINE Alu 1 296 -16 453 246 104 8 chr3 183543060 183543194 -43981384 - MIR SINE MIR -44 218 72 1215 227 3 42 chr3 183543276 183543589 -43980989 + AluJb SINE Alu 5 305 -7 704 243 34 111 chr3 183543836 183543989 -43980589 - L1MC4 LINE L1 -736 7225 7062 1660 128 16 0 chr3 183543989 183544232 -43980346 - AluSx SINE Alu -7 305 59 704 243 34 111 chr3 183544232 183544751 -43979827 - L1MC4 LINE L1 -899 7062 6646 32 0 0 0 chr3 183545100 183545132 -43979446 + AT_rich Low_complexity Low_complexity 1 32 0 347 276 104 43 chr3 183545302 183545435 -43979143 - L1MC4 LINE L1 -1979 5829 5706 2468 88 0 0 chr3 183545435 183545742 -43978836 + AluY SINE Alu 1 307 -4 2001 109 17 10 chr3 183545750 183546043 -43978535 + AluSx SINE Alu 1 295 -17 347 276 104 43 chr3 183546043 183546179 -43978399 - L1MC4 LINE L1 -2108 5700 5534 424 320 138 4 chr3 183546275 183546528 -43978050 - L1ME4a LINE L1 -253 5868 5582 498 234 0 0 chr3 183547133 183547240 -43977338 + FLAM_C SINE Alu 26 132 -11 201 250 0 0 chr3 183547515 183547571 -43977007 + (CAA)n Simple_repeat Simple_repeat 2 57 0 264 156 188 0 chr3 183547614 183547678 -43976900 + MER96 DNA MER1_type? 8 83 -92 * 611 174 8 16 chr3 183547676 183547797 -43976781 - LTR41 LTR ERVL -648 125 6 785 161 0 22 chr3 183548020 183548157 -43976421 + AluJo SINE Alu 1 134 -178 180 0 0 0 chr3 183548196 183548216 -43976362 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 308 196 74 68 chr3 183548260 183548408 -43976170 + HAL1b LINE L1 954 1102 -246 685 318 133 39 chr3 183548910 183549300 -43975278 - L2 LINE L2 -23 3249 2823 2314 105 0 3 chr3 183549317 183549623 -43974955 - AluSx SINE Alu -7 305 1 359 333 124 44 chr3 183550334 183550369 -43974209 - L2 LINE L2 -666 2648 2617 2258 111 0 7 chr3 183550369 183550675 -43973903 + AluSx SINE Alu 1 304 -8 359 333 124 44 chr3 183550675 183551098 -43973480 - L2 LINE L2 -697 2617 2153 21 0 0 0 chr3 183551627 183551648 -43972930 + AT_rich Low_complexity Low_complexity 1 21 0 1713 173 44 3 chr3 183552744 183553039 -43971539 - AluJo SINE Alu -5 307 1 1168 182 68 0 chr3 183553334 183553554 -43971024 - MER46A DNA MER2_type -1 235 1 2200 110 0 0 chr3 183553689 183554011 -43970567 - AluSx SINE Alu 0 322 1 2112 146 3 3 chr3 183554174 183554476 -43970102 + AluJb SINE Alu 6 307 -5 351 113 0 0 chr3 183554774 183554827 -43969751 + (TA)n Simple_repeat Simple_repeat 2 54 0 225 132 0 0 chr3 183555522 183555560 -43969018 + (T)n Simple_repeat Simple_repeat 1 38 0 1358 177 105 17 chr3 183557964 183558484 -43966094 - MLT1E1 LTR MaLR -28 626 1 273 221 227 12 chr3 183558675 183558805 -43965773 - MIR3 SINE MIR -49 159 7 2173 113 10 0 chr3 183559415 183559707 -43964871 - AluSx SINE Alu -17 295 1 2069 87 8 0 chr3 183560567 183560833 -43963745 - AluSq SINE Alu -45 268 1 211 244 24 0 chr3 183561712 183561753 -43962825 + L2 LINE L2 3136 3177 -95 518 226 88 15 chr3 183562303 183562440 -43962138 + MIR SINE MIR 97 243 -19 199 383 99 28 chr3 183562499 183562640 -43961938 - L2 LINE L2 0 3272 3122 607 321 157 34 chr3 183562835 183563878 -43960700 + L2 LINE L2 1334 2505 -809 2178 79 4 4 chr3 183563924 183564203 -43960375 + AluSp SINE Alu 1 279 -34 261 0 0 0 chr3 183564203 183564232 -43960346 + (CA)n Simple_repeat Simple_repeat 2 30 0 216 316 110 37 chr3 183564238 183564374 -43960204 + L2 LINE L2 2633 2778 -536 434 170 226 52 chr3 183564402 183564632 -43959946 - L1MC5 LINE L1 -51 7910 7641 232 298 97 32 chr3 183564663 183564787 -43959791 + L2 LINE L2 2773 2904 -410 609 232 0 19 chr3 183565377 183565532 -43959046 + LTR41 LTR ERVL 1 152 -621 2378 84 0 0 chr3 183565731 183566027 -43958551 + AluSg1 SINE Alu 1 296 -13 540 140 75 0 chr3 183566081 183566174 -43958404 + FLAM_C SINE Alu 7 106 -37 3171 191 82 10 chr3 183566237 183567029 -43957549 + L1ME1 LINE L1 5265 6113 -53 471 35 0 0 chr3 183567051 183567108 -43957470 + (TA)n Simple_repeat Simple_repeat 1 57 0 260 201 0 15 chr3 183567126 183567180 -43957398 - AluJ/monomer SINE Alu -251 51 9 1868 130 40 47 chr3 183567180 183567364 -43957214 - AluJo SINE Alu -13 299 116 2387 69 0 0 chr3 183567364 183567653 -43956925 + AluY SINE Alu 1 289 -22 1868 130 40 47 chr3 183567653 183567769 -43956809 - AluJo SINE Alu -196 116 1 404 281 148 57 chr3 183567915 183568407 -43956171 + L1MC4a LINE L1 4722 5258 -888 1844 169 33 0 chr3 183568438 183568740 -43955838 - AluJb SINE Alu 0 312 1 601 272 163 46 chr3 183568755 183568803 -43955775 + L1MC4a LINE L1 5320 5361 -2447 2189 143 48 69 chr3 183568803 183569280 -43955298 + MLT1C LTR MaLR 1 467 0 601 272 163 46 chr3 183569280 183569592 -43954986 + L1MC4a LINE L1 5361 5635 -2173 1946 129 61 0 chr3 183569592 183569871 -43954707 + AluSx SINE Alu 1 296 -16 601 272 163 46 chr3 183569871 183570056 -43954522 + L1MC4a LINE L1 5635 5930 -1878 325 109 0 0 chr3 183570520 183570566 -43954012 + Alu SINE Alu 1 46 -257 2455 60 17 0 chr3 183570962 183571263 -43953315 - AluSx SINE Alu -6 306 1 477 256 157 23 chr3 183571686 183572030 -43952548 - L1ME4a LINE L1 -6 6115 5726 1838 147 10 17 chr3 183572131 183572430 -43952148 + AluJb SINE Alu 1 297 -15 756 262 57 8 chr3 183572691 183572935 -43951643 - MER115 DNA AcHobo 0 693 438 506 234 94 40 chr3 183573005 183573206 -43951372 - MER115 DNA AcHobo -449 244 33 1954 147 72 30 chr3 183573570 183573972 -43950606 - MSTB1 LTR MaLR -13 419 1 1461 171 36 25 chr3 183574123 183574397 -43950181 + AluJo SINE Alu 1 277 -35 415 193 18 88 chr3 183574545 183574659 -43949919 - L2 LINE L2 -13 3300 3195 1604 137 0 0 chr3 183575125 183575359 -43949219 - AluSg/x SINE Alu -14 298 65 2272 115 0 3 chr3 183575921 183576233 -43948345 + AluSx SINE Alu 1 311 -1 389 283 81 72 chr3 183576399 183576622 -43947956 + MIR SINE MIR 8 232 -30 206 203 51 0 chr3 183576622 183576681 -43947897 + GA-rich Low_complexity Low_complexity 2 63 0 2024 112 28 0 chr3 183576939 183577225 -43947353 - AluSp SINE Alu -19 294 1 1159 241 38 31 chr3 183577242 183577727 -43946851 - MLT1E LTR MaLR -41 613 21 2346 100 0 7 chr3 183577830 183578130 -43946448 + AluSx SINE Alu 1 298 -14 601 118 0 0 chr3 183578195 183578288 -43946290 - L1PBa LINE L1 -6135 728 636 1121 146 5 0 chr3 183578293 183578485 -43946093 - L1PBa LINE L1 -6668 195 3 2141 100 28 3 chr3 183579688 183579979 -43944599 - AluSq SINE Alu -14 299 2 1662 192 18 4 chr3 183579991 183580308 -43944270 - AluJb SINE Alu 0 321 1 2244 114 7 0 chr3 183580821 183581120 -43943458 - AluSq SINE Alu -12 301 1 21 36 0 0 chr3 183581421 183581449 -43943129 + AT_rich Low_complexity Low_complexity 1 28 0 269 248 133 57 chr3 183581620 183581725 -43942853 - MIR SINE MIR -58 150 38 729 295 104 21 chr3 183582425 183582907 -43941671 - L2 LINE L2 -815 2499 1978 261 309 95 46 chr3 183583479 183583741 -43940837 - L2 LINE L2 -2882 432 158 345 89 0 0 chr3 183584424 183584469 -43940109 + U7 snRNA snRNA 1 45 -18 862 234 21 16 chr3 183584634 183584822 -43939756 - MER5A DNA MER1_type 0 189 1 2558 101 2 56 chr3 183584879 183585275 -43939303 - THE1C LTR MaLR 0 375 1 550 73 0 12 chr3 183585275 183585357 -43939221 - THE1C-int LTR MaLR 0 1580 1500 21 0 0 0 chr3 183585357 183585378 -43939200 + AT_rich Low_complexity Low_complexity 1 21 0 893 141 0 0 chr3 183585382 183585510 -43939068 - THE1C-int LTR MaLR -568 1012 885 747 159 9 0 chr3 183585510 183585623 -43938955 - AluSc SINE Alu -44 265 152 10137 117 30 9 chr3 183585629 183587106 -43937472 - THE1C-int LTR MaLR -72 1508 1 2503 122 16 3 chr3 183587108 183587476 -43937102 - THE1C LTR MaLR -2 373 1 2190 115 0 20 chr3 183588008 183588312 -43936266 - AluSc SINE Alu -11 298 1 2351 95 0 0 chr3 183588516 183588810 -43935768 - AluSg SINE Alu -16 294 1 189 107 0 0 chr3 183588940 183588968 -43935610 + (TTCC)n Simple_repeat Simple_repeat 1 28 0 1511 148 9 0 chr3 183588968 183589197 -43935381 - AluJb SINE Alu -8 304 74 1279 223 56 53 chr3 183589660 183590440 -43934138 - L1M3 LINE L1 -494 5674 4885 2220 96 7 0 chr3 183590577 183590868 -43933710 - AluSc SINE Alu -16 293 1 634 200 159 0 chr3 183590869 183591014 -43933564 - MER58A DNA MER1_type -9 215 48 228 284 0 0 chr3 183591065 183591132 -43933446 - L1M3 LINE L1 -1355 4791 4725 347 261 87 67 chr3 183591224 183591419 -43933159 - MARNA DNA Mariner -373 213 15 2344 95 3 3 chr3 183592576 183592881 -43931697 - AluSx SINE Alu -4 308 4 226 331 113 25 chr3 183594270 183594430 -43930148 + MIR3 SINE MIR 30 203 -5 1382 235 77 25 chr3 183594488 183594930 -43929648 + MLT1C LTR MaLR 1 465 -2 199 246 49 16 chr3 183595019 183595080 -43929498 + MIR SINE MIR 93 155 -107 228 305 63 0 chr3 183595124 183595219 -43929359 + MIR SINE MIR 152 252 -10 913 169 7 13 chr3 183595443 183595595 -43928983 - Tigger2 DNA MER2_type -10 2708 2558 2496 93 0 18 chr3 183595595 183595927 -43928651 - MER1A DNA MER1_type 0 529 204 7030 126 79 16 chr3 183595940 183597113 -43927465 + MER52C LTR ERV1 32 1278 0 1114 145 0 0 chr3 183597113 183597269 -43927309 - MER1A DNA MER1_type -320 207 52 8244 127 52 34 chr3 183597287 183598702 -43925876 - Tigger2 DNA MER2_type -144 2574 1135 714 194 31 0 chr3 183598702 183598831 -43925747 - AluJb SINE Alu -179 133 1 7375 119 35 6 chr3 183598831 183599184 -43925394 - Tigger2 DNA MER2_type -1571 1147 806 2438 87 0 7 chr3 183599184 183599493 -43925085 - AluSc SINE Alu -2 307 1 7375 119 35 6 chr3 183599493 183600252 -43924326 - Tigger2 DNA MER2_type -1912 806 3 755 142 0 16 chr3 183601974 183602101 -43922477 - AluJb SINE Alu -186 126 2 2350 101 0 7 chr3 183602217 183602515 -43922063 + AluSx SINE Alu 1 296 -16 1859 171 3 0 chr3 183604747 183605045 -43919533 - AluJo SINE Alu -13 299 1 2013 86 0 4 chr3 183605353 183605608 -43918970 - AluSq SINE Alu -59 254 1 2498 160 54 9 chr3 183605664 183606108 -43918470 + LTR24 LTR ERV1 4 467 0 235 191 95 67 chr3 183607542 183607647 -43916931 - MIR SINE MIR -96 166 59 934 131 12 6 chr3 183609688 183609856 -43914722 - L1MB3 LINE L1 0 6183 6015 1453 117 40 36 chr3 183609856 183610103 -43914475 - MER1B DNA MER1_type 0 339 132 351 220 16 10 chr3 183610177 183610279 -43914299 - L1MB3 LINE L1 -152 6022 5922 292 277 98 31 chr3 183610277 183610595 -43913983 - L1M4 LINE L1 -2218 3928 3590 * 315 231 77 33 chr3 183610599 183610690 -43913888 - MLT1E LTR MaLR -498 95 1 1339 204 20 4 chr3 183610733 183610983 -43913595 + AluJb SINE Alu 1 254 -58 1507 95 63 14 chr3 183611092 183611313 -43913265 - AluSx SINE Alu -78 234 3 1078 64 7 21 chr3 183611330 183611471 -43913107 + AluSg/x SINE Alu 154 292 -20 22 35 0 0 chr3 183611528 183611557 -43913021 + AT_rich Low_complexity Low_complexity 1 29 0 589 228 152 12 chr3 183611575 183611746 -43912832 - MIR SINE MIR -58 204 10 312 269 76 42 chr3 183611768 183611887 -43912691 - MIR SINE MIR -83 179 57 4185 128 72 58 chr3 183611891 183613159 -43911419 - pTR5 LTR ERV1 -156 2212 118 665 281 22 11 chr3 183613298 183613483 -43911095 - MER5A DNA MER1_type -1 188 2 1991 116 0 83 chr3 183613612 183613949 -43910629 + AluJb SINE Alu 1 309 -3 234 337 76 27 chr3 183614590 183614774 -43909804 + L2 LINE L2 2397 2589 -725 253 353 58 14 chr3 183614803 183614942 -43909636 - L3 LINE CR1 -14 1563 1419 485 230 97 10 chr3 183616808 183616957 -43907621 + MER45A DNA AcHobo 1 171 -7 2178 118 27 51 chr3 183617124 183617497 -43907081 + THE1B LTR MaLR 1 364 0 1135 264 67 44 chr3 183617521 183617971 -43906607 - L1ME4a LINE L1 -206 5915 5456 1311 164 153 33 chr3 183618281 183618647 -43905931 - L1MC4 LINE L1 -3 8039 7630 2346 99 0 0 chr3 183618810 183619112 -43905466 + AluSx SINE Alu 1 302 -10 7882 175 35 20 chr3 183619510 183622435 -43902143 + L1MA4 LINE L1 13 2998 -3330 1865 176 0 3 chr3 183622435 183622741 -43901837 + AluJb SINE Alu 1 305 -7 7882 175 35 20 chr3 183622741 183623695 -43900883 + L1MA4 LINE L1 2998 3936 -2392 5512 160 18 1 chr3 183624653 183625621 -43898957 + L1MA4 LINE L1 3945 4928 -1400 19700 154 58 14 chr3 183625625 183632328 -43892250 + L1M1 LINE L1 14 7016 -707 1127 29 7 0 chr3 183632328 183632465 -43892113 + L1PA5 LINE L1 6011 6149 -5 1159 104 31 21 chr3 183632479 183632671 -43891907 - L1PA10 LINE L1 -293 5875 5682 * 3579 84 39 0 chr3 183632662 183633292 -43891286 - L1P4 LINE L1 -378 5790 5144 * 5752 143 27 6 chr3 183633290 183634436 -43890142 + L1MA4 LINE L1 5313 6480 -2 295 88 0 0 chr3 183634445 183634494 -43890084 + L1MB1 LINE L1 6076 6124 -51 25 31 0 0 chr3 183634495 183634527 -43890051 + AT_rich Low_complexity Low_complexity 1 32 0 29 0 0 0 chr3 183634604 183634633 -43889945 + AT_rich Low_complexity Low_complexity 1 29 0 473 224 0 20 chr3 183634880 183634978 -43889600 - MIR SINE MIR -108 154 59 1783 146 70 0 chr3 183635337 183635665 -43888913 - MER46B DNA MER2_type -1 235 10 28 0 0 0 chr3 183635998 183636026 -43888552 + AT_rich Low_complexity Low_complexity 1 28 0 1664 180 0 0 chr3 183636405 183636672 -43887906 + AluJb SINE Alu 1 267 -45 1455 177 11 14 chr3 183636800 183637082 -43887496 + AluJo SINE Alu 1 281 -31 2139 120 3 3 chr3 183638418 183638718 -43885860 + AluSx SINE Alu 1 300 -12 387 0 0 0 chr3 183639831 183639874 -43884704 + (TA)n Simple_repeat Simple_repeat 2 44 0 974 314 81 43 chr3 183640453 183641319 -43883259 + L2 LINE L2 2351 3270 -2 2220 214 77 23 chr3 183642008 183642564 -43882014 + MLT1E LTR MaLR 8 593 0 2816 90 57 0 chr3 183642566 183642967 -43881611 - L1PA7 LINE L1 -3 6151 5728 930 208 78 14 chr3 183643487 183643780 -43880798 - MER33 DNA MER1_type -12 312 1 2298 163 72 52 chr3 183643940 183644230 -43880348 - MLT2B1 LTR ERVL -12 508 202 1203 149 149 38 chr3 183644230 183644491 -43880087 - AluJo SINE Alu -12 290 1 2298 163 72 52 chr3 183644491 183644698 -43879880 - MLT2B1 LTR ERVL -318 202 1 2233 117 3 0 chr3 183645068 183645368 -43879210 - AluSx SINE Alu -11 301 1 1864 158 0 7 chr3 183645894 183646185 -43878393 + AluJb SINE Alu 1 289 -23 457 178 140 0 chr3 183646245 183646352 -43878226 - MER20 DNA MER1_type -1 218 97 361 344 16 24 chr3 183646585 183646710 -43877868 - MIR SINE MIR -131 131 8 2388 90 0 0 chr3 183646870 183647169 -43877409 - AluSq SINE Alu -14 299 1 1779 176 18 3 chr3 183647235 183647570 -43877008 + MLT1A1 LTR MaLR 26 365 0 322 325 8 17 chr3 183647588 183647708 -43876870 + L2 LINE L2 2932 3050 -222 1101 240 38 41 chr3 183648460 183648826 -43875752 + MLT1A1 LTR MaLR 1 365 0 2234 51 3 41 chr3 183648979 183649303 -43875275 - AluY SINE Alu 0 313 1 235 333 97 0 chr3 183649495 183649609 -43874969 + L2 LINE L2 1298 1422 -1892 1058 325 46 19 chr3 183649926 183650492 -43874086 + ERVL LTR ERVL 4116 4696 -1068 1318 292 65 8 chr3 183650589 183651085 -43873493 + ERVL LTR ERVL 4838 5361 -403 386 289 98 49 chr3 183651653 183651878 -43872700 + LTR67 LTR ERVL 282 517 -40 865 333 141 51 chr3 183652002 183653027 -43871551 + L2 LINE L2 1813 2929 -385 310 293 105 38 chr3 183653209 183653342 -43871236 + L2 LINE L2 3171 3312 -1 1631 236 80 35 chr3 183653529 183654157 -43870421 - L1ME3 LINE L1 -7 6155 5500 596 280 27 0 chr3 183654299 183654449 -43870129 - MIR SINE MIR 0 262 109 258 343 63 46 chr3 183654453 183654628 -43869950 - MIR3 SINE MIR -2 206 29 289 43 0 22 chr3 183654876 183654922 -43869656 - MER69 DNA AcHobo -2380 146 102 2133 222 54 21 chr3 183654924 183655441 -43869137 + MLT1F LTR MaLR 9 542 0 445 261 0 0 chr3 183655441 183655529 -43869049 - MER69 DNA AcHobo -1138 88 1 500 290 55 48 chr3 183655562 183655872 -43868706 + MLT1J1 LTR MaLR 3 320 -126 180 152 0 0 chr3 183656062 183656095 -43868483 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 244 89 0 143 chr3 183656279 183656335 -43868243 - L1MC5 LINE L1 -171 7790 7743 308 311 50 0 chr3 183656690 183656809 -43867769 + MIR SINE MIR 77 201 -61 2476 184 170 105 chr3 183657680 183658236 -43866342 - L1MC3 LINE L1 -12 7773 7254 346 255 11 43 chr3 183658236 183658330 -43866248 - MLT1F1 LTR MaLR -442 125 35 2476 184 170 105 chr3 183658330 183658472 -43866106 - L1MC3 LINE L1 -531 7254 7123 1689 110 0 0 chr3 183658472 183658699 -43865879 - AluSg/x SINE Alu -6 306 80 2476 184 170 105 chr3 183658699 183658925 -43865653 - L1MC3 LINE L1 -662 7123 6689 1566 172 7 57 chr3 183659816 183660113 -43864465 + AluJo SINE Alu 1 282 -30 1170 231 153 33 chr3 183660284 183660717 -43863861 - L1MD2 LINE L1 -25 6334 5846 575 233 125 0 chr3 183660717 183660893 -43863685 + MIR SINE MIR 65 262 0 27 0 0 0 chr3 183660893 183660920 -43863658 + AT_rich Low_complexity Low_complexity 1 27 0 306 311 49 27 chr3 183660938 183661095 -43863483 + MIR SINE MIR 9 171 -37 225 94 0 0 chr3 183661305 183661337 -43863241 + (T)n Simple_repeat Simple_repeat 1 32 0 364 267 61 42 chr3 183661630 183661795 -43862783 + MLT1K LTR MaLR 421 588 0 247 326 112 11 chr3 183661795 183661933 -43862645 - MER5A DNA MER1_type -40 138 1 222 37 0 0 chr3 183661934 183661961 -43862617 + (T)n Simple_repeat Simple_repeat 1 27 0 5819 158 25 9 chr3 183662225 183662642 -43861936 - L1MC2 LINE L1 -1 6343 5934 5103 149 26 9 chr3 183662642 183663132 -43861446 - MER6 DNA MER2_type -3 862 351 288 0 0 0 chr3 183663132 183663164 -43861414 + (TTCA)n Simple_repeat Simple_repeat 3 34 0 5103 149 26 9 chr3 183663164 183663521 -43861057 - MER6 DNA MER2_type -514 351 1 5819 158 25 9 chr3 183663521 183664377 -43860201 - L1MC2 LINE L1 -410 5934 5052 1273 206 91 18 chr3 183664387 183664673 -43859905 - AluJo SINE Alu -5 307 1 876 125 0 0 chr3 183664717 183664868 -43859710 + FLAM_C SINE Alu 1 151 0 1799 126 14 0 chr3 183664896 183665190 -43859388 - L1MA3 LINE L1 0 6305 6008 472 398 51 10 chr3 183665265 183665579 -43858999 - L1ME3 LINE L1 -291 5871 5545 613 172 10 0 chr3 183665880 183665979 -43858599 - AluJ/FLAM SINE Alu -210 102 3 1262 203 38 29 chr3 183666564 183666880 -43857698 - MLT1A2 LTR MaLR -48 326 8 589 184 38 44 chr3 183666883 183667041 -43857537 - MLT1A2-int LTR MaLR -4 1731 1575 418 247 67 21 chr3 183667317 183667459 -43857119 + L1MC/D LINE L1 5476 5622 -527 251 287 74 41 chr3 183668364 183668377 -43856201 + MER5A DNA MER1_type 1 17 -172 600 158 50 8 chr3 183668377 183668497 -43856081 - MER5A DNA MER1_type 0 189 65 3638 102 16 0 chr3 183668571 183669130 -43855448 + L1PA10 LINE L1 4046 4613 -1533 5766 82 13 20 chr3 183669130 183669464 -43855114 + L1PA10 LINE L1 5273 5608 -560 3246 162 19 73 chr3 183669464 183670193 -43854385 - LTR8 LTR ERV1 -1 690 1 5766 82 13 20 chr3 183670193 183670717 -43853861 + L1PA10 LINE L1 5608 6125 -43 1948 159 69 4 chr3 183671700 183672111 -43852467 + L1MA7 LINE L1 5274 5716 -450 740 176 14 0 chr3 183672113 183672255 -43852323 + L1MA7 LINE L1 5848 5991 -300 * 874 115 0 20 chr3 183672253 183672401 -43852177 - L1MB2 LINE L1 -191 5980 5836 348 182 0 15 chr3 183672401 183672467 -43852111 - MLT1E3 LTR MaLR -51 573 509 554 174 35 9 chr3 183672472 183672587 -43851991 + L1MC1 LINE L1 6216 6333 0 851 288 165 23 chr3 183674660 183675203 -43849375 - L2 LINE L2 0 3313 2698 4577 157 35 4 chr3 183675206 183676168 -43848410 - L1MB7 LINE L1 -21 6163 5175 352 274 53 0 chr3 183676188 183676283 -43848295 - L2 LINE L2 -631 2683 2584 22 35 0 0 chr3 183676548 183676577 -43848001 + AT_rich Low_complexity Low_complexity 1 29 0 3112 65 54 34 chr3 183678216 183678660 -43845918 + MLT2A2 LTR ERVL 1 453 0 282 351 0 0 chr3 183680422 183680516 -43844062 - L2 LINE L2 -815 2499 2406 296 256 92 51 chr3 183680661 183680856 -43843722 - L2 LINE L2 -665 2649 2447 830 202 113 30 chr3 183681142 183681345 -43843233 - MER58A DNA MER1_type 0 224 5 262 318 65 0 chr3 183682352 183682459 -43842119 - L3b LINE CR1 -152 1431 1318 1716 167 4 8 chr3 183683209 183683511 -43841067 - AluJo SINE Alu 0 321 21 289 140 120 0 chr3 183683512 183683562 -43841016 - AluS SINE Alu -246 57 2 24 67 0 0 chr3 183683613 183683658 -43840920 + AT_rich Low_complexity Low_complexity 1 45 0 429 270 51 92 chr3 183683676 183683969 -43840609 - MLT1I LTR MaLR 0 409 129 320 303 106 10 chr3 183684126 183684324 -43840254 - LTR67 LTR ERVL -2 555 339 308 352 109 12 chr3 183684634 183684881 -43839697 - L1ME4a LINE L1 -53 6068 5798 1678 121 4 15 chr3 183685133 183685405 -43839173 + L1MB3 LINE L1 5913 6181 -2 197 210 0 129 chr3 183685676 183685738 -43838840 - L2 LINE L2 0 3272 3219 530 307 60 12 chr3 183685867 183686033 -43838545 + MIR3 SINE MIR 21 194 -14 192 111 0 0 chr3 183686092 183686128 -43838450 + (CA)n Simple_repeat Simple_repeat 2 37 0 779 261 43 10 chr3 183686401 183686608 -43837970 - MIR SINE MIR -35 227 14 278 159 0 0 chr3 183686782 183686826 -43837752 + Alu SINE Alu 1 44 -257 1808 159 3 20 chr3 183686997 183687299 -43837279 + AluJb SINE Alu 1 297 -15 189 195 0 0 chr3 183687397 183687438 -43837140 + (TA)n Simple_repeat Simple_repeat 1 41 0 710 194 0 0 chr3 183687667 183687791 -43836787 - FLAM_C SINE Alu -19 124 1 33 25 0 0 chr3 183689087 183689127 -43835451 + AT_rich Low_complexity Low_complexity 1 40 0 207 167 21 21 chr3 183689211 183689259 -43835319 + (TA)n Simple_repeat Simple_repeat 2 49 0 268 242 273 0 chr3 183689431 183689530 -43835048 + MIR SINE MIR 35 160 -102 194 294 44 29 chr3 183690269 183690337 -43834241 + L3 LINE CR1 821 889 -688 504 171 239 0 chr3 183690511 183690628 -43833950 + MER96 DNA MER1_type? 4 148 -27 1076 179 124 7 chr3 183691729 183692019 -43832559 + MER33 DNA MER1_type 1 324 0 1609 186 33 41 chr3 183692039 183692432 -43832146 + MLT1B LTR MaLR 1 390 0 227 342 103 26 chr3 183693310 183693427 -43831151 + L2 LINE L2 3139 3264 -8 479 150 38 60 chr3 183693739 183693872 -43830706 + L1M1 LINE L1 6 135 -7430 12556 128 79 10 chr3 183693875 183696064 -43828514 + L1M1 LINE L1 1105 3444 -4121 2178 109 60 0 chr3 183696064 183696411 -43828167 + L1MA2 LINE L1 5937 6304 0 2234 102 0 33 chr3 183696428 183696732 -43827846 + AluSq SINE Alu 1 294 -19 279 0 0 0 chr3 183696953 183696984 -43827594 + (TG)n Simple_repeat Simple_repeat 1 31 0 298 271 24 96 chr3 183697064 183697120 -43827458 - L1MC/D LINE L1 -302 5819 5761 5333 128 7 25 chr3 183697120 183698280 -43826298 - L1PA16 LINE L1 0 6166 5008 298 271 24 96 chr3 183698280 183698557 -43826021 - L1MC/D LINE L1 -360 5761 5599 1466 192 87 15 chr3 183699133 183699466 -43825112 + MSTD LTR MaLR 1 357 -39 1847 109 0 0 chr3 183699468 183699707 -43824871 + AluSq SINE Alu 58 296 -17 353 75 19 0 chr3 183699727 183699780 -43824798 + MSTD LTR MaLR 404 457 0 273 224 0 30 chr3 183699948 183700015 -43824563 - L1MC/D LINE L1 -526 5595 5531 498 248 82 21 chr3 183700027 183700365 -43824213 - L1MC/D LINE L1 -673 5491 5131 309 255 241 56 chr3 183700654 183700870 -43823708 + L1ME3A LINE L1 111 366 -5753 557 202 18 0 chr3 183700906 183701020 -43823558 + MLT1A1 LTR MaLR 250 365 0 1309 270 83 51 chr3 183701022 183701123 -43823455 + L1ME3A LINE L1 4271 4367 -1782 2597 184 68 12 chr3 183701123 183701634 -43822944 - MLT1F LTR MaLR -2 540 1 1309 270 83 51 chr3 183701634 183703045 -43821533 + L1ME3A LINE L1 4367 5832 -317 225 65 0 0 chr3 183703141 183703172 -43821406 + (TG)n Simple_repeat Simple_repeat 2 32 0 316 323 25 86 chr3 183703227 183703425 -43821153 + L1ME3A LINE L1 5951 6136 -17 2277 98 3 0 chr3 183703569 183703866 -43820712 + AluSq SINE Alu 1 298 -15 975 309 18 18 chr3 183704081 183704469 -43820109 - MLT1I LTR MaLR -21 388 1 183 42 0 0 chr3 183704485 183704509 -43820069 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 2361 42 62 7 chr3 183704539 183704827 -43819751 - AluY SINE Alu -7 304 1 341 269 67 34 chr3 183704955 183705104 -43819474 - MLT1J LTR MaLR -51 460 307 1079 278 88 61 chr3 183705339 183706269 -43818309 + L2 LINE L2 2349 3301 -12 242 213 185 0 chr3 183706427 183706535 -43818043 - L1 LINE L1 -1717 4429 4302 230 336 74 5 chr3 183707300 183707457 -43817121 + L2 LINE L2 3015 3258 -14 298 318 53 13 chr3 183708197 183708348 -43816230 - MER117 DNA MER1_type -39 158 2 605 289 95 30 chr3 183708366 183708497 -43816081 - MIR SINE MIR -1 261 140 2179 46 0 8 chr3 183708497 183708784 -43815794 - AluY SINE Alu 0 309 25 1827 138 7 4 chr3 183708784 183709058 -43815520 - AluSg SINE Alu -33 277 1 605 289 95 30 chr3 183709058 183709156 -43815422 - MIR SINE MIR -121 141 15 1520 178 22 25 chr3 183709603 183709878 -43814700 + AluJb SINE Alu 19 292 -20 317 248 73 9 chr3 183711009 183711118 -43813460 - MER94 DNA DNA 0 134 19 180 219 0 0 chr3 183711436 183711477 -43813101 + L2 LINE L2 3273 3313 0 21 89 0 0 chr3 183711546 183711602 -43812976 + AT_rich Low_complexity Low_complexity 1 56 0 21 0 0 0 chr3 183711632 183711653 -43812925 + AT_rich Low_complexity Low_complexity 1 21 0 208 211 0 0 chr3 183711715 183711753 -43812825 + MIR SINE MIR 216 253 -9 392 248 0 0 chr3 183712671 183712776 -43811802 + L1ME3A LINE L1 6053 6157 -13 794 256 65 69 chr3 183713707 183714257 -43810321 - L1MC4 LINE L1 -3 8039 7492 758 292 86 63 chr3 183714905 183715614 -43808964 - HAL1 LINE L1 -1166 1341 617 270 0 0 0 chr3 183715634 183715664 -43808914 + (TG)n Simple_repeat Simple_repeat 2 31 0 356 228 51 102 chr3 183715782 183715903 -43808675 - HAL1 LINE L1 -2299 208 101 2221 92 7 10 chr3 183715903 183716206 -43808372 - AluSg SINE Alu -8 302 1 356 228 51 102 chr3 183716206 183716299 -43808279 - HAL1 LINE L1 -2406 101 5 192 77 0 0 chr3 183717027 183717053 -43807525 + (GAAA)n Simple_repeat Simple_repeat 3 28 0 200 389 72 18 chr3 183718597 183718764 -43805814 - L2 LINE L2 -78 3194 3019 533 261 38 92 chr3 183719222 183719460 -43805118 - MIR SINE MIR -19 243 19 1728 82 0 26 chr3 183720198 183720429 -43804149 - AluSg/x SINE Alu -10 302 78 297 197 0 0 chr3 183720511 183720572 -43804006 + (CA)n Simple_repeat Simple_repeat 2 62 0 33 25 0 0 chr3 183720677 183720717 -43803861 + AT_rich Low_complexity Low_complexity 1 40 0 21 0 0 0 chr3 183720741 183720762 -43803816 + AT_rich Low_complexity Low_complexity 1 21 0 531 243 21 0 chr3 183720785 183720925 -43803653 - L1MA9 LINE L1 -38 6274 6132 333 208 0 0 chr3 183721267 183721339 -43803239 + (TA)n Simple_repeat Simple_repeat 1 72 0 1772 154 3 43 chr3 183721339 183721638 -43802940 - AluSx SINE Alu -25 287 1 215 209 0 0 chr3 183721926 183721969 -43802609 + (CAGAGA)n Simple_repeat Simple_repeat 6 48 0 256 231 11 55 chr3 183722161 183722252 -43802326 - MIR SINE MIR -56 206 120 243 0 0 0 chr3 183722294 183722321 -43802257 + (CA)n Simple_repeat Simple_repeat 2 28 0 2329 85 3 0 chr3 183722323 183722616 -43801962 + AluSc SINE Alu 1 294 -15 273 293 153 19 chr3 183722732 183722889 -43801689 + L2 LINE L2 2433 2610 -704 1751 226 45 18 chr3 183723160 183723823 -43800755 - Charlie2 DNA MER1_type -71 2791 2111 2168 113 6 25 chr3 183723824 183724143 -43800435 + AluSp SINE Alu 1 313 0 658 137 0 0 chr3 183724154 183724249 -43800329 - AluS SINE Alu -218 95 1 1089 220 67 5 chr3 183724276 183724499 -43800079 - MER8 DNA MER2_type -1 238 2 975 245 137 32 chr3 183725822 183726259 -43798319 - L2 LINE L2 0 3313 2831 452 214 19 10 chr3 183726588 183726691 -43797887 - MER8 DNA MER2_type -24 215 112 925 157 102 68 chr3 183726804 183727098 -43797480 - MLT1E2 LTR MaLR -318 308 5 2467 245 58 17 chr3 183727244 183727935 -43796643 + MER21B LTR ERV1 23 741 -122 440 297 0 16 chr3 183727949 183728077 -43796501 - MLT1E LTR MaLR -467 126 1 3153 135 46 16 chr3 183728124 183728170 -43796408 + L1PA16 LINE L1 5595 5638 -528 2595 115 40 33 chr3 183728170 183728595 -43795983 + MSTA LTR MaLR 1 428 0 3153 135 46 16 chr3 183728595 183729095 -43795483 + L1PA16 LINE L1 5638 6157 -9 744 241 117 16 chr3 183730531 183730913 -43793665 + MLT1L LTR MaLR 101 608 -7 540 280 53 49 chr3 183731006 183731249 -43793329 - MLT1K LTR MaLR -23 565 322 333 299 0 10 chr3 183731290 183731387 -43793191 - MLT1K LTR MaLR -391 197 102 2304 113 0 3 chr3 183732219 183732530 -43792048 + AluSx SINE Alu 1 310 -2 28 29 0 0 chr3 183732610 183732645 -43791933 + AT_rich Low_complexity Low_complexity 1 35 0 812 222 30 94 chr3 183733177 183733443 -43791135 + MIR SINE MIR 4 252 -10 623 260 41 25 chr3 183733678 183733874 -43790704 - L2 LINE L2 -4 3309 3111 910 118 0 0 chr3 183733875 183734010 -43790568 + AluSg/x SINE Alu 178 312 0 222 37 0 0 chr3 183734012 183734039 -43790539 + (GGAA)n Simple_repeat Simple_repeat 3 29 0 209 406 14 0 chr3 183734039 183734108 -43790470 - MIR SINE MIR -187 75 6 1217 279 56 22 chr3 183734884 183735329 -43789249 - LTR16B LTR ERVL 0 464 5 214 147 0 0 chr3 183735458 183735492 -43789086 + (TG)n Simple_repeat Simple_repeat 1 34 0 2584 152 26 30 chr3 183737886 183738378 -43786200 - L1MB2 LINE L1 0 6171 5682 2005 143 0 13 chr3 183738561 183738862 -43785716 + AluSx SINE Alu 1 297 -15 791 198 40 23 chr3 183739203 183739380 -43785198 - MIR SINE MIR -1 261 82 4456 149 70 7 chr3 183739398 183740229 -43784349 - L1MC1 LINE L1 -5 6328 5446 243 285 231 39 chr3 183740484 183740614 -43783964 + L2 LINE L2 3118 3272 0 787 280 45 122 chr3 183741280 183742222 -43782356 - L2 LINE L2 -1 3271 2412 225 0 0 0 chr3 183742225 183742250 -43782328 + (GA)n Simple_repeat Simple_repeat 2 26 0 23 33 0 0 chr3 183742520 183742550 -43782028 + AT_rich Low_complexity Low_complexity 1 30 0 220 381 7 29 chr3 183743384 183743523 -43781055 + L3b LINE CR1 1350 1485 -98 628 153 10 0 chr3 183744124 183744222 -43780356 + AluJ/FLAM SINE Alu 1 99 -213 419 162 95 0 chr3 183744232 183744306 -43780272 + AluSg/x SINE Alu 205 285 -24 228 279 9 72 chr3 183744412 183744523 -43780055 - MLT2E LTR ERVL -485 143 40 1298 225 70 6 chr3 183744630 183744986 -43779592 - MER63B DNA MER1_type -57 379 1 752 272 25 55 chr3 183746982 183747416 -43777162 + L1ME3A LINE L1 5531 5951 -219 1131 161 0 0 chr3 183747478 183747646 -43776932 + AluJo SINE Alu 42 209 -103 1794 170 3 3 chr3 183748113 183748396 -43776182 - AluJb SINE Alu -18 294 12 23 54 0 0 chr3 183748545 183748582 -43775996 + AT_rich Low_complexity Low_complexity 1 37 0 330 266 142 30 chr3 183749018 183749187 -43775391 + MIR SINE MIR 1 188 -74 407 221 0 76 chr3 183750112 183750270 -43774308 - L1ME4a LINE L1 -2 6119 5974 184 98 24 24 chr3 183751450 183751491 -43773087 + (CGGGG)n Simple_repeat Simple_repeat 4 44 0 216 67 0 0 chr3 183751529 183751559 -43773019 + (CCGAG)n Simple_repeat Simple_repeat 4 33 0 21 0 0 0 chr3 183751847 183751868 -43772710 + GC_rich Low_complexity Low_complexity 1 21 0 216 195 0 0 chr3 183751944 183751985 -43772593 + (CTG)n Simple_repeat Simple_repeat 3 43 0 347 71 0 18 chr3 183752688 183752744 -43771834 + (TG)n Simple_repeat Simple_repeat 2 56 0 32 0 0 0 chr3 183754358 183754390 -43770188 + AT_rich Low_complexity Low_complexity 1 32 0 451 305 75 23 chr3 183755521 183755695 -43768883 - L2 LINE L2 -58 3214 3032 322 323 45 8 chr3 183755723 183755856 -43768722 + MIR SINE MIR 16 153 -109 2074 126 72 26 chr3 183757625 183757973 -43766605 - THE1B LTR MaLR 0 364 1 307 270 16 8 chr3 183758820 183758946 -43765632 + MER113 DNA MER1_type? 44 170 -351 32 43 0 0 chr3 183759919 183759965 -43764613 + AT_rich Low_complexity Low_complexity 1 46 0 850 200 0 54 chr3 183760065 183760250 -43764328 - FRAM SINE Alu -2 174 1 29 28 0 0 chr3 183760273 183760309 -43764269 + AT_rich Low_complexity Low_complexity 1 36 0 2111 116 7 3 chr3 183760429 183760721 -43763857 - AluSx SINE Alu -19 293 1 418 335 46 5 chr3 183760756 183760953 -43763625 - L1ME4a LINE L1 -302 5819 5615 872 237 16 33 chr3 183760986 183761231 -43763347 - MIR SINE MIR 0 262 22 21 0 0 0 chr3 183762128 183762149 -43762429 + AT_rich Low_complexity Low_complexity 1 21 0 1686 124 58 107 chr3 183762238 183762632 -43761946 + THE1C LTR MaLR 1 375 0 2049 146 0 3 chr3 183763187 183763488 -43761090 - AluJb SINE Alu -12 300 1 479 289 88 20 chr3 183764193 183764397 -43760181 - L3b LINE CR1 -87 1496 1279 387 219 21 10 chr3 183764691 183764787 -43759791 - MLT1L LTR MaLR -8 607 511 767 251 109 58 chr3 183764855 183765214 -43759364 - MLT1L LTR MaLR -221 394 18 307 47 0 0 chr3 183765450 183765493 -43759085 + MADE1 DNA Mariner 1 43 -37 350 331 40 20 chr3 183766135 183766283 -43758295 - L1M4 LINE L1 -1923 4223 4073 1539 164 73 21 chr3 183767211 183767497 -43757081 - AluJb SINE Alu -11 301 1 243 0 0 0 chr3 183767498 183767525 -43757053 + (T)n Simple_repeat Simple_repeat 1 27 0 609 220 50 13 chr3 183768490 183768506 -43756072 - L1MA10 LINE L1 0 6334 6319 2234 210 65 36 chr3 183768506 183769253 -43755325 - L1ME1 LINE L1 -5 6161 5350 242 400 10 0 chr3 183770280 183770380 -43754198 + L2 LINE L2 2568 2668 -646 504 270 117 40 chr3 183771003 183771225 -43753353 - MIR SINE MIR -16 246 8 243 61 0 0 chr3 183772265 183772298 -43752280 + (TG)n Simple_repeat Simple_repeat 2 34 0 2125 129 10 0 chr3 183772558 183772852 -43751726 - AluSg SINE Alu -13 297 1 1867 163 7 0 chr3 183772995 183773284 -43751294 + AluJo SINE Alu 2 292 -20 4177 159 34 37 chr3 183773312 183774273 -43750305 - L1MB2 LINE L1 -1 6170 5214 445 207 0 0 chr3 183774295 183774382 -43750196 - L1MC4 LINE L1 0 8042 7956 536 214 42 42 chr3 183774587 183774755 -43749823 + MER20 DNA MER1_type 1 168 -51 318 300 71 4 chr3 183775234 183775405 -43749173 + MIR SINE MIR 3 182 -73 842 255 15 67 chr3 183775407 183775479 -43749099 + MIR SINE MIR 2 76 -186 2184 98 0 29 chr3 183775479 183775785 -43748793 - AluSx SINE Alu -15 297 1 842 255 15 67 chr3 183775785 183775979 -43748599 + MIR SINE MIR 76 254 -8 899 172 12 25 chr3 183775980 183776143 -43748435 - FRAM SINE Alu -18 158 1 191 176 0 0 chr3 183776841 183776875 -43747703 + MIR SINE MIR 195 228 -34 248 125 31 62 chr3 183777073 183777137 -43747441 - L1ME3A LINE L1 -118 6052 5991 825 216 0 0 chr3 183777947 183778109 -43746469 - L1MB7 LINE L1 -19 6165 6004 2551 80 0 0 chr3 183779271 183779582 -43744996 + AluSq SINE Alu 1 311 -2 238 254 28 28 chr3 183781057 183781128 -43743450 - L2 LINE L2 -6 3266 3196 25 75 0 0 chr3 183781246 183781299 -43743279 + AT_rich Low_complexity Low_complexity 1 53 0 654 209 75 158 chr3 183781520 183782083 -43742495 - L1MC4a LINE L1 -1841 5967 5359 279 0 0 0 chr3 183782083 183782114 -43742464 + (TC)n Simple_repeat Simple_repeat 2 32 0 279 0 0 0 chr3 183782113 183782144 -43742434 + (TG)n Simple_repeat Simple_repeat 2 32 0 654 209 75 158 chr3 183782114 183782143 -43742435 - L1MC4a LINE L1 -2449 5359 5329 189 0 0 0 chr3 183782143 183782164 -43742414 + (TA)n Simple_repeat Simple_repeat 1 21 0 2339 117 0 0 chr3 183782164 183782473 -43742105 - AluSx SINE Alu -3 309 1 654 209 75 158 chr3 183782473 183782536 -43742042 - L1MC4a LINE L1 -2478 5330 5382 5747 117 14 22 chr3 183782536 183784326 -43740252 - L1PA15 LINE L1 0 6165 4397 654 209 75 158 chr3 183784326 183784435 -43740143 - L1MC4a LINE L1 -2425 5383 5267 418 303 168 49 chr3 183784799 183785251 -43739327 - L1MC4a LINE L1 -1311 4835 4330 296 291 40 68 chr3 183785323 183785777 -43738801 - L1MC4a LINE L1 -1922 4224 3784 2028 135 6 32 chr3 183785779 183786127 -43738451 + MER2 DNA MER2_type 2 340 -4 279 252 50 58 chr3 183787255 183787394 -43737184 + MIR SINE MIR 100 237 -25 1021 283 60 27 chr3 183787467 183787835 -43736743 - L2 LINE L2 0 3313 2934 1044 102 68 0 chr3 183788352 183788529 -43736049 - L1MC3 LINE L1 0 7785 7597 600 232 182 78 chr3 183788530 183788849 -43735729 - MER21B LTR ERV1 -149 714 363 1326 187 48 0 chr3 183788887 183789155 -43735423 - L1MC3 LINE L1 -366 7419 7139 2346 149 186 8 chr3 183789622 183790106 -43734472 - MER101B LTR ERV1 0 570 1 1544 83 51 5 chr3 183790639 183790856 -43733722 + MER30 DNA MER1_type 4 230 0 684 184 97 51 chr3 183791250 183791446 -43733132 - MER20 DNA MER1_type -14 205 1 246 282 215 48 chr3 183792592 183792801 -43731777 + MIR SINE MIR 8 251 -11 1319 246 0 19 chr3 183792852 183792962 -43731616 + L2 LINE L2 2788 2903 -410 14601 116 50 7 chr3 183792962 183793015 -43731563 + Tigger1 DNA MER2_type 1 50 -2368 216 0 0 0 chr3 183793015 183793039 -43731539 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 14601 116 50 7 chr3 183793039 183793854 -43730724 + Tigger1 DNA MER2_type 50 828 -1590 2333 87 3 3 chr3 183793854 183794163 -43730415 + AluSc SINE Alu 1 309 0 14601 116 50 7 chr3 183794163 183795610 -43728968 + Tigger1 DNA MER2_type 828 2418 0 1319 246 0 19 chr3 183795610 183795998 -43728580 + L2 LINE L2 2903 3313 0 342 0 0 0 chr3 183797085 183797123 -43727455 + (CA)n Simple_repeat Simple_repeat 2 39 0 209 324 0 54 chr3 183798649 183798723 -43725855 + MIR3 SINE MIR 3 72 -136 2246 60 0 50 chr3 183799865 183800188 -43724390 - AluY SINE Alu 0 308 1 2264 119 0 0 chr3 183801395 183801698 -43722880 + AluSx SINE Alu 1 303 -9 343 260 60 102 chr3 183801818 183802053 -43722525 + MER102b DNA MER1_type 98 322 -19 680 323 49 44 chr3 183802152 183802496 -43722082 + L2 LINE L2 2917 3262 -10 316 196 0 0 chr3 183802518 183802574 -43722004 + MER5B DNA MER1_type 1 56 -122 574 195 31 23 chr3 183802587 183802715 -43721863 + FLAM_A SINE Alu 5 133 0 216 176 0 0 chr3 183802715 183802749 -43721829 + polypurine Low_complexity Low_complexity 2 35 0 742 120 22 43 chr3 183802753 183802937 -43721641 + GA-rich Low_complexity Low_complexity 1 180 0 735 183 24 0 chr3 183802938 183803064 -43721514 + MER5B DNA MER1_type 50 178 0 333 68 0 0 chr3 183804245 183804289 -43720289 + (TG)n Simple_repeat Simple_repeat 1 44 0 378 0 0 0 chr3 183804339 183804381 -43720197 + (TG)n Simple_repeat Simple_repeat 1 42 0 200 330 106 0 chr3 183805818 183805973 -43718605 + MIR SINE MIR 45 214 -48 756 193 90 6 chr3 183807357 183807523 -43717055 + MER58C DNA MER1_type 36 215 0 359 330 1 11 chr3 183807596 183807729 -43716849 + MIR SINE MIR 2 132 -76 447 111 62 0 chr3 183809067 183809148 -43715430 + L1MB3 LINE L1 6097 6182 -1 22 35 0 0 chr3 183809188 183809217 -43715361 + AT_rich Low_complexity Low_complexity 1 29 0 1981 145 0 0 chr3 183809289 183809597 -43714981 - AluSx SINE Alu 0 308 1 865 116 0 0 chr3 183810309 183810438 -43714140 + L1P5 LINE L1 5664 5792 -359 228 291 0 0 chr3 183810428 183810507 -43714071 - L1MC4 LINE L1 -1349 6693 6615 * 310 278 0 37 chr3 183810546 183810654 -43713924 - L1MC4 LINE L1 -1339 6703 6600 * 318 188 10 73 chr3 183810596 183810692 -43713886 + L1MC4 LINE L1 6614 6703 -1339 218 103 0 26 chr3 183810693 183810732 -43713846 + (TA)n Simple_repeat Simple_repeat 1 38 0 2699 78 3 29 chr3 183810742 183811125 -43713453 + L1PB1 LINE L1 5779 6151 0 414 167 0 29 chr3 183811731 183811833 -43712745 + (TA)n Simple_repeat Simple_repeat 1 99 0 2647 84 3 29 chr3 183811844 183812227 -43712351 + L1PB1 LINE L1 5779 6151 0 288 0 0 0 chr3 183813321 183813353 -43711225 + (TG)n Simple_repeat Simple_repeat 1 32 0 245 340 64 50 chr3 183814743 183815025 -43709553 - L2 LINE L2 -830 2484 2199 770 142 0 0 chr3 183815765 183815906 -43708672 - L1MA6 LINE L1 -1 6299 6159 198 71 0 0 chr3 183815947 183815975 -43708603 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 459 244 25 81 chr3 183816573 183816733 -43707845 - L2 LINE L2 0 3313 3163 211 184 0 155 chr3 183816738 183816841 -43707737 + L2 LINE L2 3133 3219 -94 815 261 60 47 chr3 183817662 183818064 -43706514 - L1ME3 LINE L1 -212 5950 5544 35 63 0 0 chr3 183818285 183818348 -43706230 + AT_rich Low_complexity Low_complexity 1 63 0 389 295 111 5 chr3 183818715 183818905 -43705673 - HAL1 LINE L1 -2286 221 12 240 319 0 0 chr3 183818945 183819014 -43705564 - MIR SINE MIR -15 247 179 212 328 60 0 chr3 183819032 183819099 -43705479 - MIR SINE MIR -187 75 5 25 31 0 0 chr3 183819498 183819530 -43705048 + AT_rich Low_complexity Low_complexity 1 32 0 272 326 3 41 chr3 183819764 183820006 -43704572 + C-rich Low_complexity Low_complexity 1 232 0 976 271 50 38 chr3 183820271 183820692 -43703886 - L1ME3A LINE L1 -220 5950 5525 35 63 0 0 chr3 183820889 183820952 -43703626 + AT_rich Low_complexity Low_complexity 1 63 0 389 295 111 5 chr3 183821319 183821509 -43703069 - HAL1 LINE L1 -2286 221 12 240 319 0 0 chr3 183821549 183821618 -43702960 - MIR SINE MIR -15 247 179 212 328 60 0 chr3 183821636 183821703 -43702875 - MIR SINE MIR -187 75 5 23 54 0 0 chr3 183822094 183822131 -43702447 + AT_rich Low_complexity Low_complexity 1 37 0 267 224 52 0 chr3 183822452 183822510 -43702068 - L2 LINE L2 -3 3310 3250 1017 120 0 0 chr3 183823048 183823181 -43701397 - AluSq/x SINE Alu -180 133 1 871 262 58 9 chr3 183823308 183823533 -43701045 - MIR SINE MIR -2 260 25 1228 232 20 20 chr3 183823707 183824061 -43700517 + MLT1A1 LTR MaLR 1 354 -11 228 163 0 0 chr3 183824813 183824856 -43699722 + (TAGA)n Simple_repeat Simple_repeat 1 43 0 374 177 13 0 chr3 183825010 183825089 -43699489 + MER116 DNA Mariner 1 80 0 348 341 85 0 chr3 183825101 183825265 -43699313 - MIR SINE MIR 0 262 85 417 39 0 0 chr3 183827116 183827167 -43697411 + (TG)n Simple_repeat Simple_repeat 2 52 0 1994 166 48 8 chr3 183827419 183827811 -43696767 - MSTA LTR MaLR 0 428 21 359 301 113 31 chr3 183828077 183828306 -43696272 - L2 LINE L2 -7 3306 3059 236 236 67 56 chr3 183829876 183829965 -43694613 - MIR SINE MIR -15 247 158 221 208 125 0 chr3 183830600 183830648 -43693930 - L2 LINE L2 -15 3257 3204 184 309 48 0 chr3 183831681 183831765 -43692813 + MIR SINE MIR 125 212 -50 24 32 0 0 chr3 183832209 183832240 -43692338 + AT_rich Low_complexity Low_complexity 1 31 0 311 269 13 0 chr3 183832246 183832324 -43692254 + MLT1I LTR MaLR 20 98 -311 210 58 115 0 chr3 184032466 184032518 -43492060 + (TA)n Simple_repeat Simple_repeat 1 58 0 181 394 32 11 chr3 184032537 184032631 -43491947 - L2 LINE L2 -18 3254 3159 295 314 23 0 chr3 184034564 184034650 -43489928 + L2 LINE L2 3185 3272 0 838 183 0 7 chr3 184034826 184034963 -43489615 + FLAM_C SINE Alu 1 136 -7 282 358 145 58 chr3 184035312 184035497 -43489081 - L2 LINE L2 0 3272 3104 2611 84 6 6 chr3 184035497 184035852 -43488726 - THE1A LTR MaLR 0 355 1 11908 92 3 0 chr3 184035852 184037427 -43487151 - THE1A-int LTR MaLR 0 1580 1 2777 84 0 0 chr3 184037427 184037782 -43486796 - THE1A LTR MaLR 0 355 1 282 358 145 58 chr3 184037782 184038021 -43486557 - L2 LINE L2 -167 3105 2809 371 323 8 0 chr3 184038084 184038211 -43486367 - MIR SINE MIR -3 259 132 424 254 21 109 chr3 184038389 184038582 -43485996 + MIR3 SINE MIR 20 195 -13 2530 71 0 0 chr3 184039574 184039882 -43484696 - AluY SINE Alu -3 308 1 273 282 0 0 chr3 184040175 184040246 -43484332 - MIR SINE MIR -8 254 184 2087 81 0 11 chr3 184040830 184041091 -43483487 + AluSg SINE Alu 1 258 -52 1911 145 17 10 chr3 184042260 184042550 -43482028 - AluJb SINE Alu -20 292 1 296 276 38 0 chr3 184042670 184042775 -43481803 + L1ME4a LINE L1 5999 6107 -14 372 292 234 12 chr3 184044248 184044419 -43480159 - MIR SINE MIR -6 256 48 338 340 39 44 chr3 184044686 184044872 -43479706 - MIR SINE MIR -56 152 16 469 254 105 101 chr3 184045573 184045821 -43478757 + L2 LINE L2 3024 3272 0 1583 250 55 33 chr3 184046154 184046698 -43477880 + LTR38 LTR ERV1 1 556 0 1330 207 46 52 chr3 184048284 184048651 -43475927 - MLT1A1 LTR MaLR 0 365 1 296 292 62 19 chr3 184048701 184048862 -43475716 - MLT1K LTR MaLR -230 358 191 195 296 37 0 chr3 184049180 184049234 -43475344 + MIR3 SINE MIR 144 199 -9 258 159 0 111 chr3 184049296 184049359 -43475219 - L2 LINE L2 0 3272 3217 261 83 0 0 chr3 184049578 184049614 -43474964 + (CA)n Simple_repeat Simple_repeat 1 36 0 185 321 158 42 chr3 184050756 184050921 -43473657 + MIR3 SINE MIR 19 202 -6 237 333 41 49 chr3 184051350 184051473 -43473105 + MIR SINE MIR 21 142 -66 254 412 10 0 chr3 184054322 184054419 -43470159 + L2 LINE L2 3140 3237 -35 2449 62 0 0 chr3 184054903 184055191 -43469387 - AluY SINE Alu -23 288 1 22 80 0 0 chr3 184055607 184055657 -43468921 + AT_rich Low_complexity Low_complexity 1 50 0 435 19 0 0 chr3 184056552 184056604 -43467974 + (TG)n Simple_repeat Simple_repeat 1 52 0 270 0 0 0 chr3 184056603 184056633 -43467945 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 401 293 90 42 chr3 184058896 184059108 -43465470 - L2 LINE L2 0 3313 3092 10133 32 1 1 chr3 184060859 184062180 -43462398 - L1P2 LINE L1 -713 5442 4122 6372 31 0 0 chr3 184062180 184062929 -43461649 + L1PA4 LINE L1 5403 6153 -2 3015 194 56 63 chr3 184062929 184063819 -43460759 + L1ME1 LINE L1 5278 6161 -5 1858 121 25 7 chr3 184066609 184066891 -43457687 + AluSx SINE Alu 1 287 -25 471 224 12 18 chr3 184066891 184067056 -43457522 + G-rich Low_complexity Low_complexity 3 166 0 702 307 95 27 chr3 184067468 184067879 -43456699 + L2 LINE L2 2013 2451 -863 244 404 83 43 chr3 184068301 184068628 -43455950 + L2 LINE L2 2929 3268 -4 1359 249 102 14 chr3 184069163 184069584 -43454994 + LTR33 LTR ERVL 3 460 -61 1318 264 80 56 chr3 184070118 184070589 -43453989 + MLT1E LTR MaLR 3 494 -99 2244 100 0 0 chr3 184070589 184070901 -43453677 - AluSc SINE Alu 0 312 1 1318 264 80 56 chr3 184070901 184071002 -43453576 + MLT1E LTR MaLR 494 591 -2 21 0 0 0 chr3 184071136 184071157 -43453421 + AT_rich Low_complexity Low_complexity 1 21 0 182 407 19 19 chr3 184071503 184071611 -43452967 + L3 LINE CR1 21 128 -1449 384 155 0 0 chr3 184072429 184072500 -43452078 + CT-rich Low_complexity Low_complexity 2 72 0 444 214 40 8 chr3 184072720 184072846 -43451732 - L1ME4a LINE L1 -37 6084 5955 210 225 0 0 chr3 184073250 184073290 -43451288 + (TGGA)n Simple_repeat Simple_repeat 1 40 0 277 259 0 0 chr3 184073514 184073568 -43451010 + L2 LINE L2 3214 3267 -5 310 249 236 47 chr3 184073607 184073635 -43450943 - MIR SINE MIR 0 262 241 1817 203 31 5 chr3 184073635 184073981 -43450597 + MLT2C1 LTR ERVL 3 361 -36 578 39 13 0 chr3 184073981 184074058 -43450520 + (CA)n Simple_repeat Simple_repeat 2 79 0 1817 203 31 5 chr3 184074058 184074096 -43450482 + MLT2C1 LTR ERVL 361 397 0 310 249 236 47 chr3 184074096 184074277 -43450301 - MIR SINE MIR -21 241 20 559 282 82 18 chr3 184075571 184075791 -43448787 - L2 LINE L2 -276 3037 2804 1246 274 169 15 chr3 184075830 184076367 -43448211 - L2 LINE L2 -802 2512 1893 309 331 81 19 chr3 184076386 184076546 -43448032 + HAL1b LINE L1 585 754 -594 294 235 60 12 chr3 184077058 184077224 -43447354 + L1M4 LINE L1 2321 2494 -3652 320 281 34 48 chr3 184077547 184077693 -43446885 + L1M4 LINE L1 2860 3003 -3143 387 301 191 16 chr3 184077989 184078172 -43446406 + MIR SINE MIR 19 233 -29 475 298 136 40 chr3 184078243 184078471 -43446107 + MIR SINE MIR 13 262 0 479 308 76 6 chr3 184079526 184079698 -43444880 - MIR3 SINE MIR -8 200 17 2391 87 0 0 chr3 184079883 184080181 -43444397 + AluSc SINE Alu 1 298 -11 27 0 0 0 chr3 184080741 184080768 -43443810 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr3 184080888 184080912 -43443666 + AT_rich Low_complexity Low_complexity 1 24 0 204 265 59 0 chr3 184081633 184081701 -43442877 - MIR SINE MIR -111 151 80 1957 170 0 16 chr3 184081706 184082012 -43442566 + AluJo SINE Alu 1 301 -11 439 345 70 12 chr3 184082557 184082728 -43441850 + MIR3 SINE MIR 28 208 0 1759 159 45 36 chr3 184083079 184083438 -43441140 - MER47A DNA MER2_type -4 362 1 2044 144 87 1 chr3 184084706 184085081 -43439497 + MSTA LTR MaLR 1 339 -25 23341 136 19 30 chr3 184085082 184089347 -43435231 - L1PA7 LINE L1 -17 6452 2177 2359 79 20 10 chr3 184089347 184089650 -43434928 + AluY SINE Alu 1 306 -5 23341 136 19 30 chr3 184089650 184091804 -43432774 - L1PA7 LINE L1 -4292 2177 3 234 62 0 0 chr3 184091804 184091836 -43432742 + MSTA LTR MaLR 384 415 -11 301 274 18 9 chr3 184092313 184092426 -43432152 - MER103 DNA DNA -16 150 37 286 340 14 111 chr3 184092764 184093117 -43431461 + L2 LINE L2 2868 3186 -86 1312 128 0 103 chr3 184093149 184093391 -43431187 - AluJo SINE Alu -25 287 71 456 326 15 15 chr3 184093393 184093525 -43431053 - MIR SINE MIR -74 134 3 266 148 19 0 chr3 184093780 184093834 -43430744 + MER103 DNA DNA 47 101 -65 542 153 15 46 chr3 184094543 184094674 -43429904 + MLT1C LTR MaLR 16 142 -325 2453 74 0 0 chr3 184095158 184095454 -43429124 - AluY SINE Alu -15 296 1 22 0 0 0 chr3 184095713 184095735 -43428843 + AT_rich Low_complexity Low_complexity 1 22 0 191 225 25 88 chr3 184097073 184097153 -43427425 + L3b LINE CR1 1415 1489 -94 695 215 0 28 chr3 184097389 184097533 -43427045 + MER5A DNA MER1_type 25 164 -25 1867 184 0 34 chr3 184098551 184098932 -43425646 + MLT1A2 LTR MaLR 1 368 -6 2801 173 34 52 chr3 184099108 184099727 -43424851 + LTR9 LTR ERV1 4 611 -1 798 238 79 33 chr3 184101391 184101631 -43422947 + MIR SINE MIR 9 259 -3 836 238 119 93 chr3 184102151 184102688 -43421890 - MLT1G1 LTR MaLR -44 551 1 362 210 12 0 chr3 184102709 184102790 -43421788 - LTR67 LTR ERVL 0 557 476 249 337 110 6 chr3 184102916 184103079 -43421499 - LTR67 LTR ERVL -246 311 132 1707 151 4 0 chr3 184103407 184103683 -43420895 + AluSx SINE Alu 31 307 0 2165 113 0 7 chr3 184104279 184104579 -43419999 - AluSg SINE Alu -12 298 1 369 213 53 53 chr3 184104724 184104818 -43419760 + L2 LINE L2 3193 3286 -27 421 285 39 63 chr3 184105717 184105924 -43418654 - L3b LINE CR1 -202 1381 1180 240 35 0 0 chr3 184107480 184107509 -43417069 + (CA)n Simple_repeat Simple_repeat 2 30 0 274 214 14 0 chr3 184107546 184107616 -43416962 + HsTC2 DNA Tc2 4 74 -1824 391 275 174 17 chr3 184108015 184108193 -43416385 - MIR SINE MIR -29 233 28 1668 167 19 0 chr3 184110112 184110375 -43414203 + AluJb SINE Alu 29 296 -16 2295 83 0 7 chr3 184111440 184111730 -43412848 - AluSc SINE Alu -21 288 1 1712 156 39 26 chr3 184112751 184113059 -43411519 + AluJb SINE Alu 1 312 0 22 0 0 0 chr3 184114314 184114336 -43410242 + AT_rich Low_complexity Low_complexity 1 22 0 411 21 0 0 chr3 184114523 184114571 -43410007 + (TG)n Simple_repeat Simple_repeat 1 48 0 183 100 0 0 chr3 184115074 184115104 -43409474 + (CAT)n Simple_repeat Simple_repeat 3 32 0 2014 197 68 33 chr3 184115105 184115592 -43408986 + MLT1D LTR MaLR 1 504 -1 406 293 146 6 chr3 184115597 184115761 -43408817 - MIR SINE MIR -75 187 1 272 253 33 44 chr3 184116037 184116128 -43408450 + MIR3 SINE MIR 4 93 -115 1763 168 45 22 chr3 184116223 184116580 -43407998 + MLT1A1 LTR MaLR 1 365 0 196 326 120 11 chr3 184117267 184117359 -43407219 - MIR SINE MIR -142 120 19 520 303 87 16 chr3 184118035 184118289 -43406289 - MLT1K LTR MaLR -178 410 139 1768 135 34 0 chr3 184118717 184118984 -43405594 + AluSx SINE Alu 37 312 0 266 407 62 0 chr3 184119477 184119590 -43404988 + L2 LINE L2 3104 3223 -49 5404 125 27 7 chr3 184120405 184120918 -43403660 - L1PA15 LINE L1 -1 6164 5626 3356 92 13 0 chr3 184120918 184121365 -43403213 + MLT2A2 LTR ERVL 1 453 0 5404 125 27 7 chr3 184121365 184121715 -43402863 - L1PA15 LINE L1 -539 5626 5284 632 133 7 154 chr3 184121863 184122142 -43402436 + L1PA4 LINE L1 5914 6151 -4 1712 151 14 27 chr3 184122285 184122577 -43402001 + AluJo SINE Alu 9 296 -16 364 283 33 0 chr3 184123055 184123147 -43401431 - MIR3 SINE MIR -7 201 107 1770 28 9 5 chr3 184123345 184123557 -43401021 + AluY SINE Alu 91 303 -8 2058 126 3 29 chr3 184123587 184123897 -43400681 + AluSx SINE Alu 1 302 -10 23 68 0 0 chr3 184124292 184124336 -43400242 + AT_rich Low_complexity Low_complexity 1 44 0 254 233 67 33 chr3 184124358 184124448 -43400130 + L1ME4a LINE L1 5961 6053 -68 389 322 89 28 chr3 184126428 184126608 -43397970 - MIR3 SINE MIR -9 199 9 1909 171 33 8 chr3 184126685 184127018 -43397560 + MLT1A1 LTR MaLR 7 407 -19 2631 104 6 6 chr3 184127018 184127382 -43397196 - THE1B LTR MaLR 0 364 1 1909 171 33 8 chr3 184127382 184127403 -43397175 + MLT1A1 LTR MaLR 407 426 0 524 250 102 13 chr3 184127679 184127915 -43396663 + L1ME4a LINE L1 5641 5897 -224 21 0 0 0 chr3 184128138 184128159 -43396419 + AT_rich Low_complexity Low_complexity 1 21 0 2153 139 22 25 chr3 184128666 184129033 -43395545 - MER47A DNA MER2_type 0 366 1 2471 57 13 0 chr3 184129075 184129375 -43395203 - AluY SINE Alu -7 304 1 2369 140 32 37 chr3 184129748 184130184 -43394394 + Tigger2a DNA MER2_type 1 434 0 401 257 121 43 chr3 184130316 184130456 -43394122 - MIR3 SINE MIR -42 166 16 214 269 122 115 chr3 184131041 184131197 -43393381 + MIR3 SINE MIR 17 173 -35 279 0 0 0 chr3 184133172 184133203 -43391375 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 186 43 0 0 chr3 184133268 184133291 -43391287 + (TTG)n Simple_repeat Simple_repeat 2 24 0 396 0 0 0 chr3 184133742 184133786 -43390792 + (CA)n Simple_repeat Simple_repeat 1 44 0 186 43 0 0 chr3 184133797 184133820 -43390758 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1182 175 0 0 chr3 184133892 184134115 -43390463 + L1MA6 LINE L1 6068 6290 -10 305 338 7 22 chr3 184134230 184134366 -43390212 + L1MC4a LINE L1 5782 5915 -1893 2292 98 0 10 chr3 184134486 184134791 -43389787 - AluSq SINE Alu -5 308 7 3608 102 2 0 chr3 184134892 184135400 -43389178 - L1PB2 LINE L1 -3 6148 5640 2716 120 22 0 chr3 184135959 184136469 -43388109 + L1PA13 LINE L1 4926 5442 -721 2457 60 3 0 chr3 184136469 184136767 -43387811 + AluY SINE Alu 1 299 -12 3203 78 5 0 chr3 184136767 184137192 -43387386 + L1PA13 LINE L1 5481 5907 -256 186 350 88 25 chr3 184137363 184137443 -43387135 + L2 LINE L2 3166 3250 -22 2467 53 7 13 chr3 184138391 184138695 -43385883 + AluY SINE Alu 1 302 -9 23 0 0 0 chr3 184138880 184138903 -43385675 + AT_rich Low_complexity Low_complexity 1 23 0 24 0 0 0 chr3 184139007 184139031 -43385547 + AT_rich Low_complexity Low_complexity 1 24 0 2222 108 7 7 chr3 184139034 184139339 -43385239 + AluSc SINE Alu 1 305 -4 594 87 0 52 chr3 184139343 184139458 -43385120 + (GGAA)n Simple_repeat Simple_repeat 2 110 0 471 257 54 0 chr3 184139465 184139613 -43384965 + L1P LINE L1 5045 5200 -946 1638 164 0 7 chr3 184139683 184139957 -43384621 + AluJb SINE Alu 3 274 -38 605 192 179 0 chr3 184140128 184140279 -43384299 - MIR SINE MIR -26 236 59 24 32 0 0 chr3 184140290 184140321 -43384257 + AT_rich Low_complexity Low_complexity 1 31 0 264 316 0 108 chr3 184145199 184145357 -43379221 + MER5A DNA MER1_type 1 141 -48 316 260 115 21 chr3 184145400 184145496 -43379082 - MER5B DNA MER1_type -63 115 11 336 258 0 0 chr3 184146232 184146298 -43378280 - L2 LINE L2 -4 3309 3244 398 253 0 0 chr3 184146404 184146487 -43378091 + L2 LINE L2 3229 3311 -2 2510 68 0 0 chr3 184146555 184146862 -43377716 + AluY SINE Alu 1 307 -4 2577 174 28 2 chr3 184147018 184147511 -43377067 - L1MB2 LINE L1 -4 6167 5662 317 265 88 22 chr3 184147589 184147725 -43376853 - L1MB2 LINE L1 -1023 5123 4979 679 261 115 17 chr3 184147782 184148016 -43376562 - MIR SINE MIR 0 262 6 1412 18 0 0 chr3 184148274 184148442 -43376136 + L1PA3 LINE L1 2796 2963 -3183 20719 28 0 0 chr3 184148442 184151696 -43372882 + L1PA3 LINE L1 2897 6151 -4 1656 128 56 4 chr3 184151989 184152255 -43372323 + AluSx SINE Alu 24 303 -9 199 82 0 61 chr3 184152282 184152331 -43372247 + (TTTTTG)n Simple_repeat Simple_repeat 3 48 0 198 314 106 83 chr3 184152916 184153407 -43371171 + L2 LINE L2 1864 2365 -949 334 280 152 16 chr3 184153450 184153575 -43371003 - L2 LINE L2 -5 3267 3126 868 251 52 4 chr3 184154211 184154442 -43370136 + MIR SINE MIR 21 262 0 700 283 140 28 chr3 184156272 184156672 -43367906 + L2 LINE L2 720 1164 -2150 5887 74 10 1 chr3 184156745 184157574 -43367004 - L1PB1 LINE L1 0 6151 5316 911 304 149 42 chr3 184157584 184157916 -43366662 + L2 LINE L2 1304 1599 -1715 2203 126 0 0 chr3 184157916 184158218 -43366360 + AluSx SINE Alu 1 302 -10 911 304 149 42 chr3 184158218 184158484 -43366094 + L2 LINE L2 1599 1966 -1348 762 306 112 0 chr3 184158565 184158888 -43365690 + L2 LINE L2 2921 3279 -34 2184 165 35 77 chr3 184158888 184159367 -43365211 + LTR32 LTR ERVL 13 471 0 216 356 94 0 chr3 184159831 184159980 -43364598 + MER5B DNA MER1_type 3 165 -13 529 263 117 98 chr3 184160692 184161102 -43363476 + MLT1K LTR MaLR 145 562 -26 1187 211 40 8 chr3 184161386 184161637 -43362941 + MIR SINE MIR 4 262 0 1561 81 49 22 chr3 184162336 184162559 -43362019 - MER30 DNA MER1_type 0 230 2 2120 219 96 18 chr3 184162579 184163236 -43361342 + MER20B DNA MER1_type 35 742 -41 1795 152 3 28 chr3 184163236 184163565 -43361013 + AluJb SINE Alu 1 322 0 1778 176 0 17 chr3 184163578 184163879 -43360699 + AluJo SINE Alu 1 296 -16 1357 130 178 20 chr3 184163881 184164134 -43360444 + AluSg1 SINE Alu 1 293 -16 37 39 0 0 chr3 184164137 184164188 -43360390 + AT_rich Low_complexity Low_complexity 1 51 0 717 239 168 30 chr3 184165837 184166134 -43358444 + MER69 DNA AcHobo 6 343 -2183 1371 220 63 153 chr3 184166514 184167232 -43357346 + MER69 DNA AcHobo 1874 2526 0 617 223 84 42 chr3 184168282 184168319 -43356259 - MER5B DNA MER1_type -5 173 139 754 70 140 0 chr3 184168319 184168433 -43356145 + L1PB1 LINE L1 6021 6150 -1 617 223 84 42 chr3 184168433 184168561 -43356017 - MER5B DNA MER1_type -39 139 1 928 145 9 88 chr3 184168570 184168797 -43355781 - MER20 DNA MER1_type -10 209 1 4274 121 167 23 chr3 184168918 184169908 -43354670 + MER11B LTR ERVK 1 1232 -4 21 36 0 0 chr3 184171089 184171117 -43353461 + AT_rich Low_complexity Low_complexity 1 28 0 2182 108 0 11 chr3 184171542 184171829 -43352749 + AluSx SINE Alu 1 284 -28 387 0 0 0 chr3 184171832 184171875 -43352703 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 1346 219 141 50 chr3 184171955 184172452 -43352126 + MLT1F LTR MaLR 1 542 0 488 219 8 0 chr3 184172793 184172916 -43351662 + CT-rich Low_complexity Low_complexity 1 124 0 1782 165 44 0 chr3 184172916 184173213 -43351365 - AluJb SINE Alu -2 310 1 21 0 0 0 chr3 184173847 184173868 -43350710 + AT_rich Low_complexity Low_complexity 1 21 0 2057 182 34 8 chr3 184174019 184174399 -43350179 + MER6 DNA MER2_type 2 391 -474 1880 188 7 0 chr3 184174751 184175060 -43349518 - AluJb SINE Alu -1 311 1 342 271 31 16 chr3 184175521 184175650 -43348928 + LTR16C LTR ERVL 361 491 0 24 0 0 0 chr3 184175975 184175999 -43348579 + AT_rich Low_complexity Low_complexity 1 24 0 198 224 158 53 chr3 184176180 184176256 -43348322 + L2 LINE L2 3184 3267 -5 20334 33 0 0 chr3 184176494 184179727 -43344851 + L1PA2 LINE L1 2912 6148 -7 21 0 0 0 chr3 184179776 184179797 -43344781 + AT_rich Low_complexity Low_complexity 1 21 0 252 0 0 0 chr3 184179812 184179840 -43344738 + (A)n Simple_repeat Simple_repeat 1 28 0 6110 32 4 0 chr3 184180597 184181354 -43343224 + L1PA4 LINE L1 5344 6103 -52 255 337 11 28 chr3 184181686 184181867 -43342711 + CT-rich Low_complexity Low_complexity 2 179 0 4473 180 35 15 chr3 184182451 184183493 -43341085 - L1P4 LINE L1 -709 5456 4393 261 83 0 0 chr3 184183493 184183529 -43341049 + (TG)n Simple_repeat Simple_repeat 2 37 0 4473 180 35 15 chr3 184183529 184183618 -43340960 - L1P4 LINE L1 -1772 4393 4307 923 202 243 50 chr3 184184824 184185244 -43339334 + MLT1D LTR MaLR 1 501 -4 23 0 0 0 chr3 184185797 184185820 -43338758 + AT_rich Low_complexity Low_complexity 1 23 0 2665 181 76 89 chr3 184187407 184188234 -43336344 + MER21B LTR ERV1 12 827 -36 876 68 0 0 chr3 184188291 184188394 -43336184 + AluY SINE Alu 29 131 -180 2208 84 3 38 chr3 184188403 184188723 -43335855 + AluY SINE Alu 1 309 -2 567 355 86 38 chr3 184189195 184189857 -43334721 - L2 LINE L2 -800 2514 1821 281 387 32 8 chr3 184189965 184190089 -43334489 - L2 LINE L2 0 3272 3146 240 35 0 0 chr3 184190432 184190461 -43334117 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 23 0 0 0 chr3 184190797 184190820 -43333758 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 184191250 184191271 -43333307 + AT_rich Low_complexity Low_complexity 1 21 0 506 130 10 30 chr3 184191294 184191394 -43333184 + L1MB7 LINE L1 6061 6158 -26 290 175 10 82 chr3 184192346 184192443 -43332135 + L1M4 LINE L1 4968 5057 -1089 1170 196 42 26 chr3 184192446 184192823 -43331755 + L1MB8 LINE L1 4967 5349 -797 2854 124 23 36 chr3 184192883 184193406 -43331172 + L1MB8 LINE L1 5663 6178 0 688 256 14 5 chr3 184193406 184193629 -43330949 + L1M4 LINE L1 5048 5272 -874 282 283 98 0 chr3 184193647 184193739 -43330839 - MIR SINE MIR -65 197 97 2510 130 18 47 chr3 184194169 184194615 -43329963 + Tigger2a DNA MER2_type 2 434 0 479 270 40 0 chr3 184194787 184194913 -43329665 + MIR SINE MIR 130 260 -2 273 200 43 14 chr3 184196081 184196151 -43328427 + L2 LINE L2 3168 3239 -74 534 152 121 61 chr3 184196334 184196466 -43328112 + AluSg/x SINE Alu 155 294 -15 234 0 0 0 chr3 184397340 184397366 -43127212 + (CAA)n Simple_repeat Simple_repeat 2 27 0 253 356 22 44 chr3 184397633 184397768 -43126810 - L2 LINE L2 -182 3090 2959 16177 129 30 1 chr3 184397897 184400246 -43124332 + Tigger1 DNA MER2_type 1 2418 0 260 351 0 0 chr3 184400924 184400998 -43123580 - MIR3 SINE MIR -26 182 109 461 296 148 46 chr3 184401069 184401440 -43123138 - L2 LINE L2 -25 3288 2880 324 304 114 23 chr3 184401482 184401745 -43122833 - L2 LINE L2 -547 2767 2481 322 247 87 27 chr3 184401846 184401996 -43122582 - L2 LINE L2 -787 2527 2369 443 291 114 6 chr3 184402059 184402234 -43122344 - L2 LINE L2 -233 3080 2887 1674 153 0 83 chr3 184403166 184403493 -43121085 - AluJo SINE Alu -11 301 2 1805 169 0 13 chr3 184403528 184403835 -43120743 - AluJo SINE Alu -9 303 1 683 245 138 93 chr3 184404734 184404865 -43119713 + MLT1G1 LTR MaLR 1 125 -470 1943 174 103 59 chr3 184404865 184404920 -43119658 + MSTB2 LTR MaLR 1 52 -405 2567 65 0 0 chr3 184404920 184405227 -43119351 + AluY SINE Alu 1 307 -4 1943 174 103 59 chr3 184405227 184405609 -43118969 + MSTB2 LTR MaLR 52 457 0 683 245 138 93 chr3 184405609 184405993 -43118585 + MLT1G1 LTR MaLR 125 595 0 574 229 28 0 chr3 184406080 184406189 -43118389 + MER81 DNA DNA 1 112 -2 2650 115 15 86 chr3 184407807 184408065 -43116513 + MER65A LTR ERV1 1 211 -234 784 172 39 0 chr3 184408065 184408193 -43116385 - FLAM_A SINE Alu 0 133 1 2650 115 15 86 chr3 184408193 184408413 -43116165 + MER65A LTR ERV1 211 445 0 317 136 291 58 chr3 184408429 184408532 -43116046 - L2 LINE L2 0 3313 3187 739 258 116 0 chr3 184408556 184408754 -43115824 - MIR SINE MIR -35 227 7 811 153 0 29 chr3 184409117 184409254 -43115324 + FLAM_A SINE Alu 1 133 0 21569 158 22 18 chr3 184409548 184413122 -43111456 + L1M1 LINE L1 16 3629 -3936 180 77 0 0 chr3 184413122 184413148 -43111430 + (CAA)n Simple_repeat Simple_repeat 2 27 0 21569 158 22 18 chr3 184413148 184413661 -43110917 + L1M1 LINE L1 3629 4138 -3427 21 0 0 0 chr3 184414113 184414134 -43110444 + AT_rich Low_complexity Low_complexity 1 21 0 458 276 152 0 chr3 184415391 184415536 -43109042 + Charlie8 DNA MER1_type 68 234 -2183 539 231 91 117 chr3 184417102 184417496 -43107082 - MLT1J LTR MaLR -19 492 109 240 224 119 0 chr3 184417785 184417852 -43106726 - Charlie8 DNA MER1_type -1950 467 393 3870 183 14 0 chr3 184417858 184418564 -43106014 - L1 LINE L1 -872 5274 4559 333 298 39 0 chr3 184419410 184419514 -43105064 - L1ME3A LINE L1 -320 5850 5743 201 39 0 0 chr3 184421155 184421181 -43103397 + (T)n Simple_repeat Simple_repeat 1 26 0 926 215 68 23 chr3 184421327 184421546 -43103032 + MIR SINE MIR 13 241 -21 193 313 0 0 chr3 184421560 184421608 -43102970 - L2 LINE L2 -548 2766 2719 312 284 128 14 chr3 184422121 184422262 -43102316 - LTR33 LTR ERVL -21 500 344 505 265 61 33 chr3 184422262 184422443 -43102135 - MIR SINE MIR -57 205 20 290 161 0 36 chr3 184422708 184422764 -43101814 - MIR SINE MIR -67 141 88 240 211 0 0 chr3 184422911 184422968 -43101610 + (TA)n Simple_repeat Simple_repeat 2 58 0 2667 23 3 0 chr3 184423052 184423351 -43101227 + AluY SINE Alu 1 300 -11 243 0 0 0 chr3 184423488 184423515 -43101063 + (A)n Simple_repeat Simple_repeat 1 27 0 1849 145 44 3 chr3 184424468 184424764 -43099814 - AluSx SINE Alu -4 308 1 410 74 0 0 chr3 184425279 184425333 -43099245 - AluSp/q SINE Alu -16 297 244 378 287 37 9 chr3 184425512 184425620 -43098958 - L2 LINE L2 -9 3263 3153 1778 176 0 3 chr3 184426229 184426524 -43098054 + AluJo SINE Alu 1 294 -18 1846 121 73 0 chr3 184427692 184427965 -43096613 + AluSp SINE Alu 1 293 -20 425 267 102 67 chr3 184428179 184428464 -43096114 - L2 LINE L2 0 3313 3019 998 112 31 6 chr3 184428464 184428625 -43095953 - MER65A LTR ERV1 0 445 281 446 130 14 0 chr3 184428625 184428694 -43095884 - AluSp/q SINE Alu -11 302 233 370 251 233 37 chr3 184428998 184429213 -43095365 + MIR SINE MIR 6 262 0 262 217 100 0 chr3 184429799 184429859 -43094719 + MIR SINE MIR 122 187 -75 782 174 0 0 chr3 184430564 184430685 -43093893 - AluJb SINE Alu -190 122 2 6207 152 8 10 chr3 184430777 184432610 -43091968 - L1PA15 LINE L1 -23 6142 4316 1809 163 3 7 chr3 184432610 184432911 -43091667 + AluSx SINE Alu 1 300 -12 1007 221 50 5 chr3 184433742 184434049 -43090529 - MER20B DNA MER1_type -59 724 358 749 227 0 0 chr3 184434049 184434177 -43090401 + FAM SINE Alu 29 156 -29 342 0 0 0 chr3 184434178 184434216 -43090362 + (TTA)n Simple_repeat Simple_repeat 2 39 0 6025 82 16 14 chr3 184434216 184434728 -43089850 - L1PB1 LINE L1 -10 6141 5632 2276 123 7 0 chr3 184434728 184435038 -43089540 - AluSx SINE Alu 0 312 1 6025 82 16 14 chr3 184435038 184435726 -43088852 - L1PB1 LINE L1 -519 5632 4900 1964 177 42 30 chr3 184435731 184436277 -43088301 + MLT2A2 LTR ERVL 1 554 0 12180 193 8 43 chr3 184436280 184437775 -43086803 - L1PBa LINE L1 -1249 5613 4067 2032 122 0 4 chr3 184437775 184438053 -43086525 + AluSg SINE Alu 14 290 -20 12180 193 8 43 chr3 184438053 184438068 -43086510 - L1PBa LINE L1 -2795 4067 4053 2079 136 3 7 chr3 184438068 184438370 -43086208 + AluSx SINE Alu 1 301 -11 12180 193 8 43 chr3 184438370 184439651 -43084927 - L1PBa LINE L1 -2809 4053 2920 523 261 55 25 chr3 184439751 184440111 -43084467 - MLT1F LTR MaLR -94 501 1 250 206 29 44 chr3 184440117 184440185 -43084393 - L1ME LINE L1 -513 5608 5542 25 0 0 0 chr3 184440191 184440216 -43084362 + AT_rich Low_complexity Low_complexity 1 25 0 227 302 163 8 chr3 184440788 184440917 -43083661 + MIR SINE MIR 92 240 -22 368 299 34 57 chr3 184441291 184441468 -43083110 - MIR SINE MIR -23 239 67 641 105 48 9 chr3 184441712 184441817 -43082761 - LOR1b LTR ERV1 -332 129 21 356 285 15 8 chr3 184441817 184441947 -43082631 + MIR SINE MIR 118 248 -14 765 261 169 19 chr3 184442215 184442636 -43081942 - L1ME4a LINE L1 -112 6009 5526 2001 117 53 0 chr3 184443100 184443382 -43081196 + AluSp SINE Alu 1 297 -16 3507 127 4 4 chr3 184443392 184443889 -43080689 - LOR1a LTR ERV1 0 497 1 2371 99 0 3 chr3 184444392 184444704 -43079874 + AluSq SINE Alu 1 311 -2 232 313 27 75 chr3 184445004 184445151 -43079427 - MIR SINE MIR -121 141 2 1014 245 83 51 chr3 184445187 184445559 -43079019 + L2 LINE L2 2922 3305 -8 318 314 7 29 chr3 184445636 184445776 -43078802 - L2 LINE L2 -256 3057 2921 21 0 0 0 chr3 184445899 184445920 -43078658 + AT_rich Low_complexity Low_complexity 1 21 0 362 282 92 40 chr3 184445923 184446097 -43078481 + L2 LINE L2 3129 3311 -2 240 159 23 0 chr3 184446108 184446152 -43078426 - L2 LINE L2 -4 3309 3265 1939 130 25 0 chr3 184447019 184447304 -43077274 - AluSc SINE Alu -17 292 1 1339 180 29 0 chr3 184447697 184447936 -43076642 - L1MB5 LINE L1 0 6174 5929 1489 139 129 7 chr3 184447936 184448216 -43076362 + THE1C LTR MaLR 7 320 -55 2655 184 15 0 chr3 184448227 184448701 -43075877 - L1MB5 LINE L1 -52 6122 5642 4044 200 102 20 chr3 184448705 184449893 -43074685 + L1MD2 LINE L1 4849 6169 -190 237 65 0 0 chr3 184449893 184449924 -43074654 + (CA)n Simple_repeat Simple_repeat 2 32 0 4044 200 102 20 chr3 184449924 184450118 -43074460 + L1MD2 LINE L1 6169 6346 -13 913 202 82 6 chr3 184450150 184450257 -43074321 + AluJo SINE Alu 14 111 -201 198 0 51 51 chr3 184450257 184450296 -43074282 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 913 202 82 6 chr3 184450296 184450371 -43074207 + AluJo SINE Alu 111 210 -102 986 172 0 0 chr3 184450382 184450545 -43074033 - AluSg/x SINE Alu 0 312 150 265 263 40 0 chr3 184451648 184451724 -43072854 + CT-rich Low_complexity Low_complexity 1 79 0 2265 84 0 53 chr3 184451829 184452185 -43072393 + L1MA3 LINE L1 5967 6303 -2 3395 206 25 17 chr3 184452213 184452983 -43071595 + L1MC4a LINE L1 7033 7808 0 264 215 77 15 chr3 184453627 184453692 -43070886 - L2 LINE L2 -1 3271 3203 186 200 164 18 chr3 184454280 184454335 -43070243 - L2 LINE L2 0 3272 3210 * 232 264 69 0 chr3 184454312 184454384 -43070194 - MIR SINE MIR -34 228 152 252 388 0 0 chr3 184456106 184456186 -43068392 + L2 LINE L2 2980 3059 -213 982 220 38 14 chr3 184456407 184456616 -43067962 + MIR SINE MIR 46 259 -3 286 255 78 0 chr3 184457034 184457136 -43067442 - MIR SINE MIR -64 144 35 5254 139 20 22 chr3 184457207 184458137 -43066441 + L1PA16 LINE L1 5222 6149 -17 268 200 25 0 chr3 184458257 184458337 -43066241 + (TA)n Simple_repeat Simple_repeat 2 83 0 606 199 68 62 chr3 184458916 184459092 -43065486 - MER5B DNA MER1_type -1 177 1 1473 109 21 17 chr3 184459681 184459920 -43064658 - LTR49 LTR ERV1 0 595 356 190 365 16 0 chr3 184460247 184460310 -43064268 + L2 LINE L2 3179 3242 -30 237 308 23 77 chr3 184461752 184461882 -43062696 + MIR SINE MIR 44 166 -96 29 84 0 0 chr3 184463727 184463798 -43060780 + AT_rich Low_complexity Low_complexity 1 71 0 1977 146 7 13 chr3 184464518 184464820 -43059758 - AluSx SINE Alu -9 303 4 1567 121 44 50 chr3 184464852 184465150 -43059428 + AluSq SINE Alu 2 297 -16 522 196 0 68 chr3 184465399 184465573 -43059005 + FLAM_A SINE Alu 5 133 0 632 214 0 23 chr3 184465633 184465764 -43058814 + MLT1E LTR MaLR 425 552 -41 183 195 24 0 chr3 184466331 184466372 -43058206 - L2 LINE L2 0 3313 3272 3376 162 14 25 chr3 184467979 184468614 -43055964 + L1MC3 LINE L1 6132 6332 -1 521 184 75 86 chr3 184468762 184468850 -43055728 + MER112 DNA MER1_type 4 91 -169 231 36 0 0 chr3 184468850 184468878 -43055700 + (GA)n Simple_repeat Simple_repeat 2 29 0 521 184 75 86 chr3 184468878 184468963 -43055615 + MER112 DNA MER1_type 91 175 -85 248 191 160 32 chr3 184468992 184469086 -43055492 + MER112 DNA MER1_type 144 249 -11 279 208 0 0 chr3 184469127 184469175 -43055403 - MER3 DNA MER1_type 0 209 162 * 547 214 0 0 chr3 184469173 184469276 -43055302 - MER3 DNA MER1_type -106 103 1 293 320 194 0 chr3 184469285 184469507 -43055071 + L2 LINE L2 2597 2861 -453 217 314 70 0 chr3 184469747 184469833 -43054745 + L2 LINE L2 3127 3218 -54 23 0 0 0 chr3 184470055 184470078 -43054500 + AT_rich Low_complexity Low_complexity 1 23 0 278 312 43 45 chr3 184470258 184470426 -43054152 + MIR SINE MIR 22 181 -38 216 171 24 0 chr3 184470781 184470822 -43053756 + MER91 DNA MER1_type 1 42 -154 1675 180 3 14 chr3 184471601 184471896 -43052682 - AluJb SINE Alu -20 292 1 2710 126 55 2 chr3 184472649 184473102 -43051476 + L1MB2 LINE L1 5691 6167 -4 876 180 18 18 chr3 184474093 184474260 -43050318 + AluJb SINE Alu 144 310 -2 1068 244 195 21 chr3 184474801 184475231 -43049347 + MLT1D LTR MaLR 1 505 0 803 164 0 8 chr3 184475296 184475430 -43049148 - FLAM_A SINE Alu 0 133 1 242 135 0 0 chr3 184475486 184475523 -43049055 - MIR SINE MIR -112 150 114 816 262 107 0 chr3 184475575 184475808 -43048770 + MIR SINE MIR 4 261 -1 379 344 32 32 chr3 184477055 184477209 -43047369 + MIR3 SINE MIR 42 195 -13 269 336 61 0 chr3 184477662 184477793 -43046785 + MIR SINE MIR 68 206 -56 607 301 210 35 chr3 184477836 184478661 -43045917 + L3 LINE CR1 595 1563 -14 270 319 90 21 chr3 184478786 184478930 -43045648 + MIR SINE MIR 91 244 -18 21 36 0 0 chr3 184480193 184480221 -43044357 + AT_rich Low_complexity Low_complexity 1 28 0 25 31 0 0 chr3 184480817 184480849 -43043729 + AT_rich Low_complexity Low_complexity 1 32 0 239 279 16 0 chr3 184481088 184481149 -43043429 - L2 LINE L2 -1 3271 3210 35 0 0 0 chr3 184481918 184481953 -43042625 + AT_rich Low_complexity Low_complexity 1 35 0 238 308 43 17 chr3 184482353 184482470 -43042108 - MIR SINE MIR 0 262 143 184 229 48 72 chr3 184482538 184482621 -43041957 - L2 LINE L2 -64 3249 3169 333 118 0 0 chr3 184482839 184482890 -43041688 + L2 LINE L2 3263 3313 0 307 224 265 85 chr3 184483836 184484059 -43040519 + L2 LINE L2 3051 3313 0 2216 108 3 16 chr3 184484144 184484460 -43040118 + AluSq SINE Alu 1 312 -1 26 30 0 0 chr3 184484473 184484506 -43040072 + AT_rich Low_complexity Low_complexity 1 33 0 2963 165 45 64 chr3 184485490 184485678 -43038900 - L1MB8 LINE L1 0 6178 5988 2772 3 0 0 chr3 184485678 184485976 -43038602 - AluYa5 SINE Alu -13 298 1 2963 165 45 64 chr3 184485976 184486504 -43038074 - L1MB8 LINE L1 -190 5988 5476 568 131 9 9 chr3 184486504 184486611 -43037967 + (TTTC)n Simple_repeat Simple_repeat 3 109 0 717 205 25 35 chr3 184486611 184486811 -43037767 - L1MB8 LINE L1 -702 5482 5285 1827 256 50 2 chr3 184486819 184487256 -43037322 - L1M4b LINE L1 -6393 466 9 24 67 0 0 chr3 184487517 184487562 -43037016 + AT_rich Low_complexity Low_complexity 1 45 0 1186 180 9 9 chr3 184490996 184491218 -43033360 - AluJo SINE Alu -8 304 83 461 261 183 54 chr3 184491218 184491736 -43032842 + L1M4 LINE L1 2752 3336 -2810 486 332 61 20 chr3 184492307 184492503 -43032075 + MIR SINE MIR 10 213 -49 2050 143 40 28 chr3 184493761 184494056 -43030522 - L1MB3 LINE L1 -45 6138 5835 1977 147 14 46 chr3 184494056 184494404 -43030174 + MER1B DNA MER1_type 1 337 0 2050 143 40 28 chr3 184494404 184494506 -43030072 - L1MB3 LINE L1 -348 5835 5736 2288 101 3 0 chr3 184494911 184495208 -43029370 + AluSp SINE Alu 5 302 -11 189 287 149 0 chr3 184495337 184495431 -43029147 - MIR SINE MIR -76 186 79 611 313 116 9 chr3 184495584 184495808 -43028770 + MIR SINE MIR 15 262 0 268 261 43 0 chr3 184495808 184495877 -43028701 + MIR SINE MIR 174 245 -17 323 299 0 0 chr3 184495955 184496032 -43028546 + CT-rich Low_complexity Low_complexity 1 77 0 351 0 0 0 chr3 184496065 184496104 -43028474 + (TG)n Simple_repeat Simple_repeat 2 40 0 2011 117 11 0 chr3 184496105 184496387 -43028191 - AluSx SINE Alu -27 285 1 1466 170 0 15 chr3 184497338 184497597 -43026981 - L1MB7 LINE L1 -70 6114 5860 256 133 22 0 chr3 184497619 184497664 -43026914 + L2 LINE L2 3268 3313 0 4362 176 25 20 chr3 184497732 184499158 -43025420 - L1MB7 LINE L1 -330 5854 4425 1395 158 18 22 chr3 184501728 184502006 -43022572 - L1PA16 LINE L1 -1 6165 5889 22 0 0 0 chr3 184502175 184502197 -43022381 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 184503208 184503230 -43021348 + AT_rich Low_complexity Low_complexity 1 22 0 277 228 109 20 chr3 184503822 184503923 -43020655 - L2 LINE L2 -19 3294 3185 188 296 88 96 chr3 184503974 184504099 -43020479 + L3 LINE CR1 1153 1276 -301 206 250 0 0 chr3 184504813 184504853 -43019725 + L3 LINE CR1 1435 1474 -103 281 214 10 7 chr3 184504871 184504984 -43019594 + MER5A DNA MER1_type 2 189 0 631 294 77 13 chr3 184505522 184505757 -43018821 + MIR SINE MIR 13 262 0 253 298 75 11 chr3 184505923 184506017 -43018561 + MIR SINE MIR 82 181 -81 1401 233 68 21 chr3 184506481 184506910 -43017668 - L1ME2 LINE L1 0 6164 5716 392 348 37 7 chr3 184506936 184507071 -43017507 - MIR3 SINE MIR -54 154 16 394 294 81 7 chr3 184507358 184507494 -43017084 + MIR3 SINE MIR 5 150 -58 576 221 89 63 chr3 184508977 184509167 -43015411 - MIR SINE MIR -2 260 66 1547 269 123 36 chr3 184509378 184510199 -43014379 - L2 LINE L2 -943 2371 1480 341 316 102 37 chr3 184510628 184510815 -43013763 - MIR SINE MIR -44 218 20 236 208 21 0 chr3 184510984 184511032 -43013546 + GA-rich Low_complexity Low_complexity 2 50 0 1429 126 169 49 chr3 184511302 184511627 -43012951 - THE1B LTR MaLR 0 364 1 273 253 44 33 chr3 184511805 184511896 -43012682 + LTR67 LTR ERVL 45 136 -421 287 274 15 59 chr3 184512059 184512194 -43012384 + LTR67 LTR ERVL 354 482 -75 198 317 50 68 chr3 184512232 184512348 -43012230 + L2 LINE L2 2654 2766 -548 368 263 76 23 chr3 184512348 184512519 -43012059 - MER104 DNA MER2_type 0 180 1 198 317 50 68 chr3 184512519 184512623 -43011955 + L2 LINE L2 2766 2870 -444 243 263 35 0 chr3 184512711 184512768 -43011810 + L2 LINE L2 3003 3061 -252 836 266 14 29 chr3 184512795 184513057 -43011521 - MIR SINE MIR -1 261 9 1181 213 121 45 chr3 184513191 184513787 -43010791 - L1MC5 LINE L1 -7 7954 7314 17730 137 11 8 chr3 184513983 184517765 -43006813 + L1PA10 LINE L1 2338 6168 0 1494 206 140 52 chr3 184517778 184518370 -43006208 + LTR48B LTR ERV1 1 644 0 189 0 0 0 chr3 184519325 184519346 -43005232 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 2593 147 14 2 chr3 184521192 184521613 -43002965 + MSTC LTR MaLR 1 426 -2 1762 148 168 21 chr3 184522117 184522551 -43002027 + LTR54B LTR ERV1 1 498 0 326 209 121 3 chr3 184523387 184523505 -43001073 + MLT1A1 LTR MaLR 1 109 -256 737 203 37 12 chr3 184523630 184523793 -43000785 + MLT1A1 LTR MaLR 197 363 -2 2011 131 0 3 chr3 184525694 184526011 -42998567 + AluSx SINE Alu 1 316 0 285 246 0 0 chr3 184526121 184526182 -42998396 - MIR SINE MIR -64 144 84 342 266 85 0 chr3 184526840 184526934 -42997644 + MIR SINE MIR 49 150 -112 309 297 22 0 chr3 184527022 184527113 -42997465 + MIR3 SINE MIR 112 204 -4 614 143 59 0 chr3 184527554 184527673 -42996905 - MER67B LTR ERV1 0 661 536 455 218 73 8 chr3 184527775 184527899 -42996679 - L1MA10 LINE L1 -11 6323 6192 1641 169 89 13 chr3 184527901 184528174 -42996404 - MER67B LTR ERV1 -127 534 283 2205 184 68 80 chr3 184528174 184528270 -42996308 - LTR48B LTR ERV1 0 644 548 1651 210 3 0 chr3 184528270 184528556 -42996022 + AluJb SINE Alu 1 287 -25 2205 184 68 80 chr3 184528556 184529111 -42995467 - LTR48B LTR ERV1 -96 548 1 1641 169 89 13 chr3 184529111 184529302 -42995276 - MER67B LTR ERV1 -378 283 1 276 269 15 0 chr3 184529370 184529437 -42995141 - L2 LINE L2 0 3313 3246 1112 186 24 5 chr3 184530725 184530935 -42993643 + MER20 DNA MER1_type 3 216 -3 456 252 224 7 chr3 184531004 184531147 -42993431 + MER5A DNA MER1_type 16 189 0 232 205 0 26 chr3 184531315 184531393 -42993185 + CT-rich Low_complexity Low_complexity 4 79 0 28 29 0 0 chr3 184531873 184531908 -42992670 + AT_rich Low_complexity Low_complexity 1 35 0 462 49 0 0 chr3 184532030 184532091 -42992487 + (TG)n Simple_repeat Simple_repeat 1 61 0 7673 79 6 24 chr3 184534000 184535091 -42989487 - MER11C LTR ERVK 0 1071 1 802 200 35 0 chr3 184536697 184536867 -42987711 - MER20 DNA MER1_type -4 215 40 538 236 36 0 chr3 184537089 184537229 -42987349 + L1MC3 LINE L1 7632 7776 -9 1704 84 8 0 chr3 184537601 184537838 -42986740 - L1PB1 LINE L1 0 6151 5913 460 133 44 0 chr3 184537847 184537937 -42986641 - MER53 DNA DNA 0 189 96 566 288 119 31 chr3 184538004 184538358 -42986220 - L2 LINE L2 -1 3312 2928 1333 101 0 0 chr3 184539025 184539233 -42985345 - L1MA8 LINE L1 -5 6286 6079 1371 276 205 3 chr3 184539308 184539943 -42984635 + L2 LINE L2 1538 2300 -1014 572 313 0 0 chr3 184539989 184540123 -42984455 + L2 LINE L2 2564 2697 -617 1103 29 0 14 chr3 184540123 184540261 -42984317 - AluY SINE Alu -2 309 174 573 288 119 31 chr3 184540261 184540806 -42983772 + L2 LINE L2 2687 3276 -37 27 0 0 0 chr3 184541415 184541442 -42983136 + AT_rich Low_complexity Low_complexity 1 27 0 434 299 83 120 chr3 184541456 184542097 -42982481 + L1ME4a LINE L1 5325 5941 -180 204 97 0 0 chr3 184542534 184542565 -42982013 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 2303 96 3 6 chr3 184542714 184543026 -42981552 + AluSq SINE Alu 1 311 -2 513 104 0 0 chr3 184543028 184543105 -42981473 + (GGGGA)n Simple_repeat Simple_repeat 5 81 0 1710 134 4 0 chr3 184543349 184543602 -42980976 + AluSx SINE Alu 58 311 -1 2276 193 33 0 chr3 184544467 184544919 -42979659 + MLT1C LTR MaLR 1 467 0 394 264 47 90 chr3 184545111 184545323 -42979255 - MIR SINE MIR -13 249 47 868 189 6 18 chr3 184545428 184545597 -42978981 - AluJo SINE Alu -24 288 122 222 37 0 0 chr3 184545681 184545708 -42978870 + (TG)n Simple_repeat Simple_repeat 2 28 0 2015 94 0 4 chr3 184547112 184547377 -42977201 - AluSx SINE Alu -12 300 37 1501 187 5 101 chr3 184548257 184548580 -42975998 - MLT1A2 LTR MaLR -4 370 92 2227 112 0 0 chr3 184548580 184548876 -42975702 - AluSx SINE Alu -16 296 1 1501 187 5 101 chr3 184548876 184548958 -42975620 - MLT1A2 LTR MaLR -282 92 4 479 359 94 24 chr3 184550434 184550849 -42973729 + L2 LINE L2 2847 3290 -23 1472 233 53 48 chr3 184551360 184551816 -42972762 + LTR40a LTR ERVL 1 458 -61 207 0 0 0 chr3 184551902 184551925 -42972653 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 341 293 17 52 chr3 184552272 184552446 -42972132 + L1ME LINE L1 348 515 -5857 881 197 67 4 chr3 184553279 184553518 -42971060 + L1 LINE L1 4944 5197 -949 9451 188 30 51 chr3 184553521 184554372 -42970206 + L1PA16 LINE L1 2819 3686 -2480 423 0 0 0 chr3 184554372 184554419 -42970159 + (CA)n Simple_repeat Simple_repeat 2 48 0 9451 188 30 51 chr3 184554419 184556990 -42967588 + L1PA16 LINE L1 3686 6164 -2 739 156 7 22 chr3 184557009 184557144 -42967434 + FLAM_C SINE Alu 1 133 0 354 162 40 0 chr3 184557162 184557236 -42967342 + L1 LINE L1 5197 5273 -873 41 0 0 0 chr3 184557438 184557479 -42967099 + AT_rich Low_complexity Low_complexity 1 41 0 554 231 25 50 chr3 184557734 184557894 -42966684 - MER5A DNA MER1_type -1 188 33 225 287 32 21 chr3 184560022 184560116 -42964462 + LTR33A LTR ERVL 58 152 -371 348 265 37 37 chr3 184560264 184560426 -42964152 + LTR33A LTR ERVL 360 521 -2 463 295 86 70 chr3 184561451 184562106 -42962472 + Charlie4 DNA MER1_type 500 1164 -797 437 307 90 47 chr3 184564067 184564490 -42960088 - LTR67 LTR ERVL -54 503 63 1220 259 46 12 chr3 184564733 184565058 -42959520 + MLT1E3 LTR MaLR 289 624 0 320 245 31 0 chr3 184565075 184565173 -42959405 + L1MC4a LINE L1 5737 5837 -1971 311 262 79 16 chr3 184565175 184565301 -42959277 + L1MC4a LINE L1 5898 6031 -1777 1013 267 71 41 chr3 184565609 184566077 -42958501 + L1ME LINE L1 1385 2015 -4548 4502 154 12 8 chr3 184566119 184566873 -42957705 + Tigger2 DNA MER2_type 1 757 -1961 345 111 0 0 chr3 184566926 184566989 -42957589 + Tigger2 DNA MER2_type 2451 2513 -205 732 222 32 83 chr3 184566989 184567376 -42957202 + L1MC5 LINE L1 6886 7215 -746 654 125 18 0 chr3 184567469 184567581 -42956997 - L1MB7 LINE L1 -2 6182 6069 1319 140 85 13 chr3 184567582 184568001 -42956577 - LTR54 LTR ERV1 0 510 1 2427 161 43 9 chr3 184568001 184568462 -42956116 - L1MB7 LINE L1 -113 6071 5595 776 250 6 17 chr3 184569025 184569201 -42955377 - MER58A DNA MER1_type -45 179 6 207 0 0 0 chr3 184569473 184569496 -42955082 + (T)n Simple_repeat Simple_repeat 1 23 0 590 137 0 8 chr3 184569613 184569627 -42954951 + (GA)n Simple_repeat Simple_repeat 2 15 -109 297 118 0 0 chr3 184569627 184569678 -42954900 + (TG)n Simple_repeat Simple_repeat 1 51 0 590 137 0 8 chr3 184569678 184569787 -42954791 + (GA)n Simple_repeat Simple_repeat 15 124 0 2122 118 3 0 chr3 184570203 184570516 -42954062 - AluY SINE Alu 0 314 1 1670 136 19 50 chr3 184571169 184571486 -42953092 - L1MA6 LINE L1 0 6300 5994 21 0 0 0 chr3 184571518 184571539 -42953039 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 184571576 184571597 -42952981 + AT_rich Low_complexity Low_complexity 1 21 0 3689 251 103 40 chr3 184571747 184573010 -42951568 + L1ME1 LINE L1 36 1461 -4935 360 0 0 0 chr3 184573010 184573050 -42951528 + (CA)n Simple_repeat Simple_repeat 2 41 0 3689 251 103 40 chr3 184573050 184573698 -42950880 + L1ME1 LINE L1 1461 2067 -4329 242 269 17 25 chr3 184573705 184573824 -42950754 + L1ME1 LINE L1 3383 3500 -2715 2494 243 70 13 chr3 184573845 184574611 -42949967 + L1ME1 LINE L1 3593 4402 -1813 * 2977 172 48 8 chr3 184574600 184574693 -42949885 - L1MB1 LINE L1 -280 5888 5800 423 0 0 0 chr3 184574693 184574740 -42949838 + (TA)n Simple_repeat Simple_repeat 1 47 0 2977 172 48 8 chr3 184574740 184575315 -42949263 - L1MB1 LINE L1 -368 5800 5191 30 0 0 0 chr3 184575318 184575348 -42949230 + AT_rich Low_complexity Low_complexity 1 30 0 784 181 0 0 chr3 184575368 184575506 -42949072 - AluJb SINE Alu -174 138 1 359 125 62 0 chr3 184575507 184575587 -42948991 - L1MB1 LINE L1 -945 5201 5117 1587 194 0 0 chr3 184575615 184575908 -42948670 + L1MB1 LINE L1 5869 6161 -7 814 247 65 9 chr3 184575986 184576215 -42948363 + LTR16C LTR ERVL 202 443 -48 1175 221 118 63 chr3 184576215 184576708 -42947870 + MER34C LTR ERV1 1 520 -65 2058 145 21 8 chr3 184576739 184577119 -42947459 - L1MA5 LINE L1 -1 6299 5915 428 139 0 13 chr3 184577120 184577199 -42947379 + MSTA-int LTR MaLR 1574 1651 0 1652 169 160 6 chr3 184577199 184577518 -42947060 + MSTA LTR MaLR 1 368 -60 7503 217 41 40 chr3 184577520 184579578 -42945000 - L1M4 LINE L1 -1754 5454 3399 652 205 8 0 chr3 184579578 184579695 -42944883 - FLAM_C SINE Alu -15 118 1 7503 217 41 40 chr3 184579695 184582387 -42942191 - L1M4 LINE L1 -3809 3399 4 971 234 73 3 chr3 184582691 184583020 -42941558 + L1ME1 LINE L1 4421 4772 -1443 239 229 0 0 chr3 184583104 184583165 -42941413 + LTR66 LTR ERVL 394 454 -156 * 968 237 20 15 chr3 184583144 184583339 -42941239 + MER21B LTR ERV1 15 210 -653 2011 198 43 8 chr3 184583339 184583738 -42940840 + MSTB LTR MaLR 1 413 -13 3288 196 30 7 chr3 184583739 184584347 -42940231 + MER21B LTR ERV1 228 849 -14 3029 241 35 32 chr3 184584359 184585685 -42938893 + L1ME1 LINE L1 4910 6230 -5 23 33 0 0 chr3 184585772 184585802 -42938776 + AT_rich Low_complexity Low_complexity 1 30 0 1450 209 3 33 chr3 184586010 184586312 -42938266 - AluJo SINE Alu -19 293 1 569 172 0 10 chr3 184586331 184586430 -42938148 - 7SLRNA srpRNA srpRNA -4 316 219 1517 279 34 12 chr3 184586911 184587417 -42937161 + LTR40a LTR ERVL 1 517 -2 28 48 0 0 chr3 184587945 184587987 -42936591 + AT_rich Low_complexity Low_complexity 1 42 0 565 313 60 0 chr3 184589366 184589532 -42935046 - LTR67 LTR ERVL -329 228 53 3318 115 24 8 chr3 184589621 184590116 -42934462 - MER84 LTR ERV1 -4 503 1 2874 149 44 39 chr3 184590255 184590369 -42934209 - MER34C LTR ERV1 0 585 473 1350 177 155 22 chr3 184590369 184590691 -42933887 - MLT1A1 LTR MaLR 0 365 1 2874 149 44 39 chr3 184590691 184591146 -42933432 - MER34C LTR ERV1 -112 473 13 1844 176 91 3 chr3 184591364 184591728 -42932850 - MER57A LTR ERV1 0 403 8 816 117 8 0 chr3 184591767 184591887 -42932691 - MER57A LTR ERV1 -282 121 1 230 81 27 0 chr3 184593484 184593521 -42931057 + (TA)n Simple_repeat Simple_repeat 2 39 0 2307 98 0 3 chr3 184593883 184594190 -42930388 - AluSp SINE Alu -7 306 1 22 0 0 0 chr3 184594390 184594412 -42930166 + AT_rich Low_complexity Low_complexity 1 22 0 2292 63 7 3 chr3 184594413 184594699 -42929879 - AluY SINE Alu -24 287 1 245 324 95 0 chr3 184594851 184594956 -42929622 + MLT1I LTR MaLR 98 212 -197 243 288 0 0 chr3 184595209 184595282 -42929296 - L1MC4 LINE L1 -37 8005 7933 1208 179 198 22 chr3 184595385 184595703 -42928875 - MLT1A2 LTR MaLR 0 374 1 383 252 31 75 chr3 184596323 184596400 -42928178 + MIR SINE MIR 22 90 -172 2170 96 20 10 chr3 184596400 184596703 -42927875 - AluSq SINE Alu -6 307 2 383 252 31 75 chr3 184596703 184596784 -42927794 + MIR SINE MIR 90 173 -89 330 211 105 26 chr3 184597346 184597460 -42927118 - MER5A DNA MER1_type 0 189 67 500 310 40 14 chr3 184597585 184597860 -42926718 + L1MC4a LINE L1 5636 5826 -416 228 167 0 48 chr3 184598108 184598150 -42926428 - MIR3 SINE MIR -48 160 121 573 302 91 52 chr3 184598995 184599402 -42925176 + L2 LINE L2 2887 3309 -4 22 0 0 0 chr3 184600611 184600633 -42923945 + AT_rich Low_complexity Low_complexity 1 22 0 186 327 73 67 chr3 184601875 184602025 -42922553 - MIR3 SINE MIR -7 201 51 577 144 0 27 chr3 184603292 184603403 -42921175 - L1MC2 LINE L1 -1 6343 6236 437 265 130 22 chr3 184604639 184604824 -42919754 + L2 LINE L2 3105 3309 -4 543 153 0 12 chr3 184605188 184605273 -42919305 + MSTD LTR MaLR 1 84 -312 262 265 48 36 chr3 184605293 184605376 -42919202 + L2 LINE L2 3188 3271 -1 704 272 87 56 chr3 184605382 184605705 -42918873 + MLT1H LTR MaLR 2 334 -215 955 209 121 0 chr3 184605766 184605972 -42918606 + MSTD LTR MaLR 164 394 -2 267 103 0 0 chr3 184606356 184606395 -42918183 + (TTCTCC)n Simple_repeat Simple_repeat 3 41 0 1155 77 0 19 chr3 184606398 184606553 -42918025 - AluSg/x SINE Alu -3 307 156 704 284 31 27 chr3 184606710 184606932 -42917646 - MIR SINE MIR -39 223 1 350 203 171 41 chr3 184607225 184607348 -42917230 - L3 LINE CR1 -6 1571 1433 1515 273 117 2 chr3 184607561 184608059 -42916519 + MLT1H1 LTR MaLR 1 555 0 720 264 93 59 chr3 184608172 184608494 -42916084 - MLT1H LTR MaLR -215 334 2 288 325 50 33 chr3 184608500 184608620 -42915958 - L2 LINE L2 -1 3271 3150 662 298 37 18 chr3 184609375 184609593 -42914985 + MIR SINE MIR 3 224 -38 194 122 0 143 chr3 184610012 184610061 -42914517 + L2 LINE L2 3272 3313 0 388 274 28 0 chr3 184610699 184610805 -42913773 + MIR SINE MIR 66 174 -88 5801 207 9 10 chr3 184610832 184612927 -42911651 - L1PA16 LINE L1 -7 6159 4058 753 149 149 19 chr3 184614495 184614656 -42909922 - MER3 DNA MER1_type -27 182 1 560 265 36 20 chr3 184615762 184615958 -42908620 + L2 LINE L2 3115 3313 0 22 0 0 0 chr3 184618405 184618427 -42906151 + AT_rich Low_complexity Low_complexity 1 22 0 2019 128 7 3 chr3 184619044 184619332 -42905246 - AluSx SINE Alu -22 290 2 219 269 52 82 chr3 184619674 184619808 -42904770 + MIR3 SINE MIR 10 139 -69 1652 187 0 32 chr3 184621987 184622322 -42902256 - AluJo SINE Alu 0 312 1 238 87 0 0 chr3 184622528 184622574 -42902004 - LTR66 LTR ERVL -171 439 394 226 231 77 0 chr3 184622604 184622682 -42901896 - L1MC4 LINE L1 -1345 6697 6614 303 259 86 9 chr3 184622800 184622916 -42901662 - MER103 DNA DNA -10 156 32 592 287 130 23 chr3 184623784 184624084 -42900494 + L2 LINE L2 2261 2592 -722 1852 220 94 22 chr3 184624111 184624789 -42899789 - Zaphod DNA AcHobo -9 4022 3296 1605 287 95 15 chr3 184624804 184625396 -42899182 - Zaphod DNA AcHobo -3392 639 1 482 143 0 0 chr3 184625429 184625506 -42899072 - AluJ/FRAM SINE Alu -20 292 216 258 313 58 91 chr3 184625768 184626011 -42898567 - L2 LINE L2 -759 2555 2321 185 196 18 0 chr3 184626281 184626337 -42898241 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 25 51 0 0 chr3 184626365 184626404 -42898174 + AT_rich Low_complexity Low_complexity 1 39 0 4607 177 7 85 chr3 184626928 184628008 -42896570 - Tigger4(Zombi) DNA MER2_type -504 2227 1232 2316 180 118 12 chr3 184628108 184628829 -42895749 - SATR1 Satellite Satellite 0 797 1 327 202 40 16 chr3 184628835 184628959 -42895619 + (TTATA)n Simple_repeat Simple_repeat 5 131 0 1525 181 148 28 chr3 184628965 184629448 -42895130 - SATR1 Satellite Satellite -93 541 1 3152 151 15 15 chr3 184629738 184630273 -42894305 - L1P LINE L1 -1917 4229 3695 1909 132 36 0 chr3 184630991 184631272 -42893306 - AluSq SINE Alu -22 291 1 428 352 75 9 chr3 184631580 184631793 -42892785 + MIR SINE MIR 10 236 -26 680 341 5 0 chr3 184632264 184632487 -42892091 + L3 LINE CR1 1354 1577 0 1325 0 0 0 chr3 184632614 184632755 -42891823 + AluYa5 SINE Alu 1 141 -170 700 246 39 20 chr3 184633057 184633260 -42891318 - L1ME3 LINE L1 -130 6032 5826 509 281 31 0 chr3 184633610 184633738 -42890840 - L2 LINE L2 0 3313 3182 821 96 8 0 chr3 184633975 184634100 -42890478 + (TCTA)n Simple_repeat Simple_repeat 2 127 0 299 268 27 45 chr3 184634579 184634691 -42889887 - MLT1J2 LTR MaLR -23 427 318 447 302 30 50 chr3 184634724 184634926 -42889652 - MLT1I LTR MaLR -123 286 89 302 274 108 0 chr3 184636237 184636339 -42888239 - MLT1L LTR MaLR 0 615 503 262 245 20 41 chr3 184636372 184636470 -42888108 - MLT1K LTR MaLR -158 430 335 345 327 65 9 chr3 184636530 184636744 -42887834 + MLT1J LTR MaLR 6 231 -280 3504 167 14 2 chr3 184636749 184637389 -42887189 - L1P LINE L1 -1169 4977 4330 2322 123 25 8 chr3 184638601 184638959 -42885619 + THE1B LTR MaLR 1 364 0 21 36 0 0 chr3 184639231 184639259 -42885319 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 184640382 184640404 -42884174 + AT_rich Low_complexity Low_complexity 1 22 0 813 192 91 0 chr3 184640498 184640717 -42883861 + MER5C DNA MER1_type 86 324 0 253 341 23 11 chr3 184641859 184641947 -42882631 + MIR3 SINE MIR 109 197 -11 394 266 92 95 chr3 184642975 184643324 -42881254 - MLT1I LTR MaLR -2 407 60 1806 104 8 4 chr3 184643817 184644058 -42880520 + AluSq SINE Alu 35 276 -37 228 316 70 38 chr3 184644117 184644275 -42880303 - MIR SINE MIR -43 219 57 209 294 0 0 chr3 184646022 184646073 -42878505 + L2 LINE L2 3263 3313 0 24 0 0 0 chr3 184646076 184646100 -42878478 + AT_rich Low_complexity Low_complexity 1 24 0 603 292 136 56 chr3 184646253 184646664 -42877914 - MLT1H LTR MaLR -105 444 1 2087 102 11 3 chr3 184646731 184647016 -42877562 - AluSx SINE Alu -25 287 1 1743 146 29 25 chr3 184647017 184647297 -42877281 - AluSx SINE Alu -18 294 14 475 269 10 0 chr3 184648174 184648278 -42876300 - MER91B DNA MER1_type -1 189 85 329 220 44 22 chr3 184648291 184648382 -42876196 - MER91B DNA MER1_type -60 130 38 377 318 11 80 chr3 184648771 184648947 -42875631 + MIR SINE MIR 23 186 -76 3330 218 85 15 chr3 184651011 184651440 -42873138 - L1MD2 LINE L1 -2 6357 5959 1606 96 0 0 chr3 184651440 184651660 -42872918 - L1PA8 LINE L1 -6 6166 5947 3330 218 85 15 chr3 184651660 184652132 -42872446 - L1MD2 LINE L1 -400 5959 5394 2131 117 3 29 chr3 184652181 184652497 -42872081 - AluSx SINE Alu -4 308 1 230 118 0 0 chr3 184652520 184652554 -42872024 - MLT2C1 LTR ERVL -10 387 354 408 67 0 0 chr3 184652569 184652629 -42871949 + (TC)n Simple_repeat Simple_repeat 2 61 0 309 26 0 0 chr3 184652629 184652667 -42871911 + (CA)n Simple_repeat Simple_repeat 1 38 0 294 29 0 0 chr3 184652666 184652701 -42871877 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 1756 167 134 3 chr3 184652704 184653063 -42871515 - MLT2C2 LTR ERVL -58 406 1 28 0 0 0 chr3 184653094 184653122 -42871456 + AT_rich Low_complexity Low_complexity 1 28 0 1725 161 100 0 chr3 184653131 184653461 -42871117 - L1MB3 LINE L1 -11 6172 5810 927 297 105 16 chr3 184653620 184654184 -42870394 + L2 LINE L2 2687 3294 -19 797 284 102 39 chr3 184654605 184654940 -42869638 + LTR16A LTR ERVL 95 450 0 557 287 187 5 chr3 184655114 184655323 -42869255 + MIR SINE MIR 10 256 -6 200 188 0 0 chr3 184656042 184656074 -42868504 + polypyrimidine Low_complexity Low_complexity 2 33 0 469 292 46 15 chr3 184656217 184656347 -42868231 - L2 LINE L2 0 3272 3139 906 264 50 10 chr3 184656910 184657209 -42867369 - L1ME3 LINE L1 -26 6136 5826 518 206 26 26 chr3 184657209 184657364 -42867214 - L1MD2 LINE L1 -756 5408 5254 5866 60 48 0 chr3 184657605 184658372 -42866206 - L1PA6 LINE L1 -3 6151 5348 3881 91 0 17 chr3 184658369 184658953 -42865625 + L1PA6 LINE L1 4789 5362 -784 * 22 0 0 0 chr3 184659008 184659030 -42865548 + AT_rich Low_complexity Low_complexity 1 22 0 2674 162 101 16 chr3 184659233 184664617 -42859961 - SATR1 Satellite Satellite 0 5841 1 1885 167 9 0 chr3 184664719 184665042 -42859536 - L1M3 LINE L1 -377 5806 5481 251 288 237 0 chr3 184665141 184665259 -42859319 + MIR SINE MIR 49 194 -68 1358 222 47 21 chr3 184667220 184667558 -42857020 - MLT1A1 LTR MaLR 0 365 19 250 259 143 9 chr3 184667772 184667884 -42856694 + MIR SINE MIR 20 146 -62 517 103 0 0 chr3 184667952 184668030 -42856548 + L1PB1 LINE L1 6074 6151 0 1056 275 104 38 chr3 184668833 184669393 -42855185 - L2 LINE L2 -17 3296 2714 259 299 91 20 chr3 184669430 184669627 -42854951 - L1ME LINE L1 -334 5828 5618 195 42 0 0 chr3 184669667 184669691 -42854887 + (TA)n Simple_repeat Simple_repeat 2 25 0 553 241 71 0 chr3 184669691 184669803 -42854775 - FLAM_A SINE Alu -12 121 2 198 0 0 0 chr3 184669816 184669838 -42854740 + (TTA)n Simple_repeat Simple_repeat 3 24 0 7354 29 0 13 chr3 184669838 184670806 -42853772 - L1PA4 LINE L1 -18 6137 5172 309 289 70 13 chr3 184670810 184670966 -42853612 - L1ME LINE L1 -1082 5064 4900 1591 191 157 44 chr3 184671004 184671455 -42853123 + MLT1D LTR MaLR 1 502 -3 424 309 87 35 chr3 184671507 184671849 -42852729 - L1ME LINE L1 -522 5640 5271 25 51 0 0 chr3 184671940 184671979 -42852599 + AT_rich Low_complexity Low_complexity 1 39 0 1490 225 7 0 chr3 184672033 184672326 -42852252 - AluJo SINE Alu -9 303 9 229 269 0 127 chr3 184673084 184673218 -42851360 + MIR SINE MIR 84 200 -62 967 274 8 4 chr3 184673540 184673799 -42850779 - MIR SINE MIR 0 262 3 2014 134 0 48 chr3 184674239 184674552 -42850026 - AluSx SINE Alu -12 300 3 4649 243 83 12 chr3 184674975 184676338 -42848240 - L1MC4 LINE L1 -140 7902 6444 216 149 0 0 chr3 184676597 184676644 -42847934 + (GGAA)n Simple_repeat Simple_repeat 4 50 0 198 325 128 34 chr3 184676681 184676798 -42847780 - MIR SINE MIR -92 170 43 182 211 77 0 chr3 184678490 184678542 -42846036 - MIR SINE MIR -138 124 69 365 341 70 14 chr3 184679232 184679446 -42845132 + MIR SINE MIR 32 257 -5 21 0 0 0 chr3 184680649 184680670 -42843908 + AT_rich Low_complexity Low_complexity 1 21 0 193 266 105 91 chr3 184684117 184684260 -42840318 - MIR3 SINE MIR -60 148 4 1103 166 19 28 chr3 184684372 184684583 -42839995 + MER3 DNA MER1_type 1 209 0 383 214 34 11 chr3 184684588 184684677 -42839901 - MIR3 SINE MIR -51 157 67 296 209 45 15 chr3 184685713 184685780 -42838798 + MIR3 SINE MIR 125 193 -15 22 56 0 0 chr3 184686116 184686152 -42838426 + AT_rich Low_complexity Low_complexity 1 36 0 245 220 0 0 chr3 184686563 184686613 -42837965 - L2 LINE L2 -4 3268 3219 459 0 0 0 chr3 184687232 184687283 -42837295 + (TA)n Simple_repeat Simple_repeat 1 51 0 288 235 104 43 chr3 184687290 184687405 -42837173 - MIR SINE MIR -31 231 110 24 0 0 0 chr3 184687947 184687971 -42836607 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr3 184689319 184689351 -42835227 + AT_rich Low_complexity Low_complexity 1 32 0 186 342 13 0 chr3 184689383 184689462 -42835116 - MIR SINE MIR -6 256 177 1408 127 53 4 chr3 184690125 184690370 -42834208 - L1PA15 LINE L1 0 6165 5909 24 32 0 0 chr3 184691780 184691811 -42832767 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3 184691964 184691992 -42832586 + AT_rich Low_complexity Low_complexity 1 28 0 253 48 0 0 chr3 184692431 184692473 -42832105 - L1MA4 LINE L1 -231 6074 6029 2040 99 3 23 chr3 184692711 184693013 -42831565 + AluY SINE Alu 1 296 -15 314 270 11 0 chr3 184694335 184694424 -42830154 - L1ME LINE L1 -469 5652 5563 29 28 0 0 chr3 184694451 184694487 -42830091 + AT_rich Low_complexity Low_complexity 1 36 0 258 116 0 0 chr3 184695307 184695350 -42829228 + (TC)n Simple_repeat Simple_repeat 2 44 0 182 330 0 73 chr3 184695836 184695945 -42828633 + L3 LINE CR1 658 758 -819 268 315 55 41 chr3 184696318 184696464 -42828114 + L3b LINE CR1 1323 1470 -113 950 202 11 5 chr3 184697300 184697488 -42827090 + MER5A DNA MER1_type 1 189 0 248 313 94 10 chr3 184697489 184697585 -42826993 - MER81 DNA DNA -1 113 10 22 35 0 0 chr3 184698037 184698066 -42826512 + AT_rich Low_complexity Low_complexity 1 29 0 204 274 194 0 chr3 184699224 184699286 -42825292 - MIR3 SINE MIR -53 155 82 603 62 0 0 chr3 184700098 184700178 -42824400 + (CA)n Simple_repeat Simple_repeat 2 81 0 2084 199 5 5 chr3 184701034 184701430 -42823148 - MSTD LTR MaLR 0 396 1 932 250 35 27 chr3 184701525 184701785 -42822793 - MIR SINE MIR 0 262 1 484 324 33 48 chr3 184702174 184702446 -42822132 - L2 LINE L2 -347 2967 2700 1372 208 18 133 chr3 184702718 184703289 -42821289 - MLT1D LTR MaLR 0 505 1 213 175 0 0 chr3 184703818 184703858 -42820720 + (TA)n Simple_repeat Simple_repeat 2 41 0 528 296 92 12 chr3 184705727 184705967 -42818611 + MER102a DNA MER1_type 72 330 0 180 288 96 72 chr3 184705972 184706097 -42818481 - L2 LINE L2 -494 2820 2693 1535 112 5 0 chr3 184706107 184706313 -42818265 + AluSq SINE Alu 3 209 -104 2934 151 2 14 chr3 184706522 184707011 -42817567 + L1PA16 LINE L1 5684 6166 0 1499 212 3 3 chr3 184707016 184707304 -42817274 + AluJb SINE Alu 2 289 -23 2672 108 0 13 chr3 184708276 184708656 -42815922 - THE1C LTR MaLR 0 375 1 10050 116 52 3 chr3 184708656 184710162 -42814416 - THE1C-int LTR MaLR 0 1580 1 2541 105 39 3 chr3 184710162 184710524 -42814054 - THE1C LTR MaLR 0 375 1 505 264 92 40 chr3 184710859 184711033 -42813545 + MIR3 SINE MIR 19 201 -7 373 279 53 136 chr3 184711644 184711800 -42812778 + L2 LINE L2 2015 2142 -1172 694 165 30 30 chr3 184711800 184711933 -42812645 - FLAM_C SINE Alu 0 133 1 373 279 53 136 chr3 184711933 184712041 -42812537 + L2 LINE L2 2142 2257 -1057 351 237 38 95 chr3 184712047 184712258 -42812320 - MER110 LTR ERV1 -30 461 263 209 255 128 90 chr3 184712265 184712453 -42812125 + L2 LINE L2 3024 3218 -95 200 354 10 0 chr3 184712831 184712927 -42811651 + T-rich Low_complexity Low_complexity 2 98 0 659 257 60 57 chr3 184713325 184713660 -42810918 - HAL1 LINE L1 0 2507 2172 3186 245 78 53 chr3 184713975 184715391 -42809187 - L1MEc LINE L1 -1481 4734 3283 2055 238 61 18 chr3 184715389 184716124 -42808454 - L1MEc LINE L1 -4038 2358 1592 * 864 261 118 92 chr3 184716121 184716691 -42807887 - HAL1 LINE L1 -972 1535 981 * 1550 101 23 5 chr3 184716691 184716910 -42807668 - AluSg/x SINE Alu -8 302 80 864 261 118 92 chr3 184716910 184717748 -42806830 - HAL1 LINE L1 -1526 981 90 206 238 24 0 chr3 184717748 184717790 -42806788 - MER5A DNA MER1_type -7 182 140 194 297 31 0 chr3 184717980 184718044 -42806534 - MIR SINE MIR -113 149 84 343 188 31 62 chr3 184718136 184718232 -42806346 - MER81 DNA DNA -21 93 1 314 222 230 56 chr3 184718233 184718359 -42806219 - MER5B DNA MER1_type -30 148 1 736 220 35 45 chr3 184718500 184718700 -42805878 + MER58A DNA MER1_type 27 224 0 432 241 199 14 chr3 184718858 184718999 -42805579 - MER5A DNA MER1_type -7 182 16 777 229 56 0 chr3 184719197 184719376 -42805202 + MER5A DNA MER1_type 1 189 0 32 67 0 0 chr3 184719807 184719867 -42804711 + AT_rich Low_complexity Low_complexity 1 60 0 23 33 0 0 chr3 184720124 184720154 -42804424 + AT_rich Low_complexity Low_complexity 1 30 0 2289 153 59 0 chr3 184720156 184720581 -42803997 - L1MA9 LINE L1 -2 6310 5861 2431 138 36 34 chr3 184720581 184720676 -42803902 - MER65A LTR ERV1 -1 444 351 1875 126 190 14 chr3 184720676 184721040 -42803538 - MSTA LTR MaLR 0 428 1 2431 138 36 34 chr3 184721040 184721387 -42803191 - MER65A LTR ERV1 -94 351 1 2687 133 6 50 chr3 184721387 184721889 -42802689 - L1MA9 LINE L1 -426 5865 5386 1797 42 0 0 chr3 184722010 184722224 -42802354 - L1PA5 LINE L1 -146 6008 5795 1501 40 0 0 chr3 184722222 184722398 -42802180 + L1P2 LINE L1 5483 5658 -496 * 2633 161 21 8 chr3 184722395 184722917 -42801661 - L1MA9 LINE L1 -744 5402 4874 369 326 83 33 chr3 184723315 184723496 -42801082 - L1ME LINE L1 -517 5604 5415 194 91 30 0 chr3 184723603 184723636 -42800942 + (TA)n Simple_repeat Simple_repeat 2 35 0 224 165 25 89 chr3 184723645 184723724 -42800854 + (CATATA)n Simple_repeat Simple_repeat 3 76 0 650 246 121 10 chr3 184726053 184726252 -42798326 + MER58A DNA MER1_type 4 224 0 23 33 0 0 chr3 184726342 184726372 -42798206 + AT_rich Low_complexity Low_complexity 1 30 0 211 188 0 42 chr3 184727017 184727065 -42797513 + (TATATG)n Simple_repeat Simple_repeat 6 51 0 340 201 22 82 chr3 184727065 184727134 -42797444 + L1MC4 LINE L1 7900 7959 -83 635 208 93 49 chr3 184727134 184727360 -42797218 + MER106A DNA MER1_type 1 236 0 340 201 22 82 chr3 184727360 184727424 -42797154 + L1MC4 LINE L1 7959 8025 -17 244 281 79 0 chr3 184729339 184729428 -42795150 + MIR SINE MIR 164 259 -3 28 0 0 0 chr3 184729472 184729500 -42795078 + AT_rich Low_complexity Low_complexity 1 28 0 565 273 44 24 chr3 184729604 184729809 -42794769 - MER63A DNA MER1_type 0 210 2 2170 198 14 49 chr3 184730213 184730703 -42793875 - MLT1D LTR MaLR -2 503 31 620 98 0 0 chr3 184730708 184730790 -42793788 + MSTA LTR MaLR 347 428 0 9919 122 23 33 chr3 184730798 184732394 -42792184 + THE1C-int LTR MaLR 1 1580 0 2181 114 25 28 chr3 184732394 184732755 -42791823 + THE1C LTR MaLR 1 360 -15 2327 166 26 14 chr3 184732762 184733185 -42791393 - MSTA LTR MaLR 0 428 1 2681 247 45 109 chr3 184733219 184734236 -42790342 - MLT1D-int LTR MaLR 0 1371 475 213 0 81 0 chr3 184734236 184734273 -42790305 + A-rich Low_complexity Low_complexity 2 41 0 2681 247 45 109 chr3 184734273 184734720 -42789858 - MLT1D-int LTR MaLR -896 475 1 1265 229 17 54 chr3 184734720 184735130 -42789448 - MLT2C1 LTR ERVL 0 397 3 1984 125 25 0 chr3 184735510 184735791 -42788787 - AluSx SINE Alu -14 298 11 450 0 0 0 chr3 184736950 184737000 -42787578 + (TA)n Simple_repeat Simple_repeat 1 50 0 901 168 5 56 chr3 184737348 184737460 -42787118 - MLT1B LTR MaLR -109 281 182 1562 172 0 11 chr3 184737460 184737722 -42786856 - AluJb SINE Alu -14 298 40 901 168 5 56 chr3 184737722 184737805 -42786773 - MLT1B LTR MaLR -208 182 96 617 214 0 0 chr3 184737832 184737944 -42786634 - FLAM_A SINE Alu -20 122 11 526 148 0 131 chr3 184737957 184738079 -42786499 - MLT1B LTR MaLR -280 110 5 203 261 0 0 chr3 184738230 184738276 -42786302 + MIR3 SINE MIR 157 202 -6 22 35 0 0 chr3 184738634 184738663 -42785915 + AT_rich Low_complexity Low_complexity 1 29 0 281 271 32 90 chr3 184738805 184738960 -42785618 - MIR SINE MIR -109 153 8 303 153 34 0 chr3 184739460 184739519 -42785059 - L1MB2 LINE L1 -39 6132 6072 351 304 23 65 chr3 184740181 184740398 -42784180 - L2 LINE L2 0 3313 3106 1563 216 37 12 chr3 184740401 184740437 -42784141 - MLT2B1 LTR ERVL -8 406 372 396 0 0 0 chr3 184740437 184740481 -42784097 + (CA)n Simple_repeat Simple_repeat 2 45 0 1563 216 37 12 chr3 184740481 184740828 -42783750 - MLT2B1 LTR ERVL -42 372 6 788 305 94 61 chr3 184740870 184741558 -42783020 - L2 LINE L2 -245 3068 2368 294 87 0 0 chr3 184741558 184741604 -42782974 + (TG)n Simple_repeat Simple_repeat 2 47 0 788 305 94 61 chr3 184741604 184741821 -42782757 - L2 LINE L2 -945 2368 2160 401 306 154 12 chr3 184744003 184744198 -42780380 + MIR SINE MIR 12 231 -31 27 0 0 0 chr3 184744343 184744370 -42780208 + AT_rich Low_complexity Low_complexity 1 27 0 415 278 61 50 chr3 184745844 184745904 -42778674 + MER92C LTR ERV1 3 61 -493 1531 201 3 19 chr3 184745904 184746030 -42778548 + AluJb SINE Alu 1 128 -184 261 0 0 0 chr3 184746030 184746059 -42778519 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 1531 201 3 19 chr3 184746059 184746245 -42778333 + AluJb SINE Alu 127 308 -4 415 278 61 50 chr3 184746245 184746364 -42778214 + MER92C LTR ERV1 61 184 -370 321 111 0 95 chr3 184746475 184746538 -42778040 + MER92C LTR ERV1 498 554 0 1067 303 75 99 chr3 184746965 184749036 -42775542 + LTR49-int LTR ERV1 1045 3066 -1870 1792 241 48 97 chr3 184749406 184749838 -42774740 + LTR49-int LTR ERV1 3194 3571 -1365 2348 133 8 3 chr3 184749838 184750200 -42774378 - THE1B LTR MaLR 0 364 1 1792 241 48 97 chr3 184750200 184750561 -42774017 + LTR49-int LTR ERV1 3571 3948 -988 2446 222 36 20 chr3 184750561 184750662 -42773916 + MER77 LTR ERV1 1 99 -506 1562 185 33 41 chr3 184750662 184751030 -42773548 + MLT1A1 LTR MaLR 1 365 0 2446 222 36 20 chr3 184751030 184751486 -42773092 + MER77 LTR ERV1 99 567 -38 698 262 19 23 chr3 184751501 184751715 -42772863 + LTR49-int LTR ERV1 5303 5515 -816 614 215 121 36 chr3 184751764 184751987 -42772591 + LTR37A LTR ERV1 4 245 -181 573 259 27 32 chr3 184752656 184752841 -42771737 + MER92C LTR ERV1 1 184 -370 365 197 0 0 chr3 184752901 184752972 -42771606 + MER92C LTR ERV1 484 554 0 269 51 26 0 chr3 184752993 184753032 -42771546 + (TG)n Simple_repeat Simple_repeat 2 41 0 281 269 97 0 chr3 184753157 184753250 -42771328 - MER5A DNA MER1_type -79 110 9 186 43 0 0 chr3 184754523 184754546 -42770032 + (TG)n Simple_repeat Simple_repeat 1 23 0 412 320 19 48 chr3 184755518 184755724 -42768854 - L1M4 LINE L1 -3024 3122 2923 26 0 0 0 chr3 184755750 184755776 -42768802 + AT_rich Low_complexity Low_complexity 1 26 0 2681 178 86 6 chr3 184755965 184756503 -42768075 - MER34C LTR ERV1 0 585 5 184 359 131 20 chr3 184756550 184756748 -42767830 + L2 LINE L2 1728 1947 -1367 2240 186 38 26 chr3 184757014 184757518 -42767060 - LTR54 LTR ERV1 0 510 1 923 173 29 112 chr3 184759289 184759636 -42764942 + MER33 DNA MER1_type 6 323 -1 314 284 113 64 chr3 184759639 184759688 -42764890 - MER5A DNA MER1_type -36 153 108 3083 166 13 91 chr3 184759688 184760437 -42764141 - LTR8 LTR ERV1 0 691 1 314 284 113 64 chr3 184760437 184760528 -42764050 - MER5A DNA MER1_type -81 108 6 327 297 111 61 chr3 184760668 184760979 -42763599 - L2 LINE L2 -213 3059 2721 2504 74 3 3 chr3 184761369 184761705 -42762873 - L1PA8 LINE L1 -1 6171 5836 21 57 0 0 chr3 184761997 184762032 -42762546 + AT_rich Low_complexity Low_complexity 1 35 0 1020 306 82 18 chr3 184762493 184762934 -42761644 + L2 LINE L2 2013 2481 -833 441 259 272 6 chr3 184762956 184763118 -42761460 - MIR SINE MIR -4 258 54 * 726 349 89 25 chr3 184763112 184763786 -42760792 + L2 LINE L2 2493 3221 -92 235 232 29 29 chr3 184763861 184763930 -42760648 + L2 LINE L2 3233 3301 -12 476 195 106 8 chr3 184764108 184764231 -42760347 - MER96B DNA MER1_type? -1 416 282 298 172 151 54 chr3 184764305 184764398 -42760180 + L2 LINE L2 3204 3305 -8 189 94 0 0 chr3 184764639 184764671 -42759907 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 2162 93 3 17 chr3 184764671 184764960 -42759618 - AluSp SINE Alu -28 285 1 1389 204 70 26 chr3 184765190 184765644 -42758934 - LTR48 LTR ERV1 0 787 135 233 189 0 0 chr3 184765676 184765713 -42758865 - LTR48B LTR ERV1 -604 40 4 628 207 30 2 chr3 184766372 184766545 -42758033 - MER20 DNA MER1_type -1 218 1 21 0 0 0 chr3 184766578 184766599 -42757979 + AT_rich Low_complexity Low_complexity 1 21 0 1475 213 54 12 chr3 184766695 184767312 -42757266 + L1ME LINE L1 5101 5747 -417 591 229 138 73 chr3 184767314 184767586 -42756992 + L1MC4 LINE L1 7403 7701 -341 1735 169 7 3 chr3 184767586 184767876 -42756702 + AluJb SINE Alu 1 291 -21 591 229 138 73 chr3 184767876 184767930 -42756648 + L1MC4 LINE L1 7701 7750 -292 582 97 250 16 chr3 184767984 184768108 -42756470 - MER4A LTR ERV1 -18 447 295 1613 167 35 48 chr3 184768138 184768533 -42756045 - MER4A LTR ERV1 -228 354 1 703 197 42 100 chr3 184768536 184768795 -42755783 + L1MC4 LINE L1 7797 8040 -2 1783 274 83 13 chr3 184768880 184769413 -42755165 - MLT1E LTR MaLR -23 570 1 382 329 96 0 chr3 184770010 184770177 -42754401 + LTR67 LTR ERVL 304 486 -71 1751 199 152 19 chr3 184770182 184770649 -42753929 - LTR64 LTR ERVK -7 551 23 217 402 17 0 chr3 184770800 184770917 -42753661 - L2 LINE L2 -3 3310 3192 254 197 152 15 chr3 184772013 184772079 -42752499 + MIR3 SINE MIR 125 199 -9 26 0 0 0 chr3 184773464 184773490 -42751088 + AT_rich Low_complexity Low_complexity 1 26 0 2450 68 0 3 chr3 184773491 184773801 -42750777 + AluY SINE Alu 1 309 -2 2937 92 28 5 chr3 184774249 184774682 -42749896 - L1PA8 LINE L1 0 6172 5730 15369 116 16 2 chr3 184774703 184777075 -42747503 - L1PA8 LINE L1 -1638 4508 2103 477 200 19 0 chr3 184777082 184777187 -42747391 + L1PA8 LINE L1 2012 2118 -4028 1451 249 60 60 chr3 184778722 184779273 -42745305 - MER68 LTR ERV1 -9 553 3 211 277 198 20 chr3 184779298 184779399 -42745179 + MIR SINE MIR 31 149 -113 663 258 62 0 chr3 184779783 184779961 -42744617 + MIR SINE MIR 3 191 -71 372 315 27 34 chr3 184780033 184780182 -42744396 + MIR SINE MIR 4 151 -111 * 442 304 88 25 chr3 184780157 184780436 -42744142 - L2 LINE L2 -283 2989 2698 228 161 0 149 chr3 184780541 184780628 -42743950 + Charlie5 DNA MER1_type 2506 2579 -33 426 121 0 0 chr3 184780685 184780743 -42743835 - LTR8 LTR ERV1 0 691 634 264 293 170 0 chr3 184781889 184781995 -42742583 + MIR3 SINE MIR 57 180 -28 25 0 0 0 chr3 184782067 184782092 -42742486 + AT_rich Low_complexity Low_complexity 1 25 0 370 256 17 83 chr3 184782705 184782885 -42741693 + L2 LINE L2 3146 3313 0 325 267 69 12 chr3 184783830 184783935 -42740643 - MIR3 SINE MIR -45 163 53 4220 154 73 31 chr3 184784724 184785165 -42739413 - L1MA4A LINE L1 -224 6079 5658 1639 179 45 0 chr3 184785165 184785455 -42739123 - AluJb SINE Alu -9 303 1 4220 154 73 31 chr3 184785455 184785574 -42739004 - L1MA4A LINE L1 -645 5658 5545 1823 95 48 4 chr3 184785574 184785849 -42738729 - AluSc SINE Alu 0 306 21 4220 154 73 31 chr3 184785849 184785988 -42738590 - L1MA4A LINE L1 -758 5545 5413 512 76 13 0 chr3 184785988 184786067 -42738511 - L1PA6 LINE L1 0 6154 6075 4220 154 73 31 chr3 184786067 184787031 -42737547 - L1MA4A LINE L1 -890 5413 4336 14576 193 28 14 chr3 184787141 184790334 -42734244 - L1 LINE L1 -1037 5811 2503 1800 179 0 0 chr3 184790334 184790631 -42733947 - AluSx SINE Alu -15 297 1 14576 193 28 14 chr3 184790631 184793167 -42731411 - L1 LINE L1 -4345 2503 3 197 349 71 8 chr3 184793209 184793335 -42731243 + L3b LINE CR1 1384 1517 -66 25 31 0 0 chr3 184793374 184793406 -42731172 + AT_rich Low_complexity Low_complexity 1 32 0 728 270 87 69 chr3 184793788 184794177 -42730401 - MLT1H LTR MaLR -146 403 8 222 281 89 37 chr3 184794373 184794508 -42730070 - MIR SINE MIR -3 259 118 730 179 81 54 chr3 184794962 184795185 -42729393 - LTR48 LTR ERV1 0 787 367 533 105 0 23 chr3 184795167 184795253 -42729325 - LTR49 LTR ERV1 -247 348 265 * 448 134 0 12 chr3 184795356 184795438 -42729140 - LTR49 LTR ERV1 -514 81 1 227 357 162 8 chr3 184796206 184796447 -42728131 - L2 LINE L2 -4 3309 3032 1787 185 29 29 chr3 184796465 184796886 -42727692 - LTR52 LTR ERVL 0 421 1 1047 317 33 27 chr3 184797606 184798116 -42726462 - L2 LINE L2 -26 3287 2777 513 311 246 33 chr3 184798172 184798838 -42725740 + L2 LINE L2 1597 2404 -910 351 223 9 71 chr3 184799674 184799786 -42724792 - MIR SINE MIR 0 262 158 335 241 85 28 chr3 184799786 184799927 -42724651 - MLT1L LTR MaLR 0 615 467 370 320 88 74 chr3 184800285 184800716 -42723862 - MLT1L LTR MaLR -7 608 172 265 345 60 0 chr3 184801003 184801087 -42723491 - L2 LINE L2 -34 3238 3150 2197 185 5 10 chr3 184802232 184802648 -42721930 - L1PA16 LINE L1 0 6166 5753 1948 186 75 66 chr3 184802659 184803190 -42721388 - LTR10A LTR ERV1 -61 548 13 1260 153 5 5 chr3 184803197 184803412 -42721166 - L1PA16 LINE L1 -406 5760 5546 * 2259 144 12 10 chr3 184803409 184804028 -42720550 + L1P4 LINE L1 4984 5599 -567 255 157 0 39 chr3 184804037 184804088 -42720490 + MER5B DNA MER1_type 20 68 -110 334 301 129 24 chr3 184804272 184804604 -42719974 - L1M4 LINE L1 -3311 2835 2469 206 250 35 0 chr3 184804779 184804895 -42719683 + (TATAA)n Simple_repeat Simple_repeat 5 124 0 * 272 264 22 17 chr3 184804812 184804990 -42719588 + (TA)n Simple_repeat Simple_repeat 1 179 0 294 215 90 28 chr3 184805013 184805190 -42719388 - L1M4 LINE L1 -3849 2297 2110 302 311 108 18 chr3 184805583 184805869 -42718709 - HAL1 LINE L1 -1043 1464 1153 270 296 0 20 chr3 184806010 184806108 -42718470 + CT-rich Low_complexity Low_complexity 2 97 0 198 0 0 0 chr3 184806277 184806299 -42718279 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 498 298 54 62 chr3 184806468 184806710 -42717868 + MER102b DNA MER1_type 102 341 0 1502 259 21 117 chr3 184806781 184807252 -42717326 + MSTB LTR MaLR 1 426 0 22 0 0 0 chr3 184807500 184807522 -42717056 + AT_rich Low_complexity Low_complexity 1 22 0 413 335 48 28 chr3 184807534 184807785 -42716793 - MIR SINE MIR 0 262 7 219 358 65 24 chr3 184807976 184808099 -42716479 + L2 LINE L2 3136 3263 -9 261 197 0 0 chr3 184808626 184808687 -42715891 + (TG)n Simple_repeat Simple_repeat 1 61 0 207 0 0 0 chr3 184809513 184809536 -42715042 + (TTTA)n Simple_repeat Simple_repeat 3 25 0 22 56 0 0 chr3 184809741 184809777 -42714801 + AT_rich Low_complexity Low_complexity 1 36 0 1859 91 4 0 chr3 184809988 184810231 -42714347 + AluSg SINE Alu 2 245 -65 3661 193 35 22 chr3 184810349 184811059 -42713519 + MER21B LTR ERV1 134 852 -11 26 50 0 0 chr3 184811513 184811553 -42713025 + AT_rich Low_complexity Low_complexity 1 40 0 272 176 81 0 chr3 184811565 184811639 -42712939 - L1M4 LINE L1 -1714 4432 4353 410 285 122 18 chr3 184811921 184812142 -42712436 - L1M4 LINE L1 -2098 4048 3805 30618 122 16 55 chr3 184812918 184819181 -42705397 + L1PA7 LINE L1 12 6018 -136 180 0 0 0 chr3 184819509 184819529 -42705049 + (TCCC)n Simple_repeat Simple_repeat 1 20 0 1192 78 6 6 chr3 184819529 184819708 -42704870 + (TTCC)n Simple_repeat Simple_repeat 1 179 0 1479 154 0 4 chr3 184819733 184819966 -42704612 + AluSg/x SINE Alu 81 312 0 989 214 89 5 chr3 184819969 184820193 -42704385 + MER110 LTR ERV1 9 251 -240 3256 284 57 75 chr3 184820195 184821672 -42702906 + MER110-int LTR ERV1 2096 3530 -1117 1444 189 25 83 chr3 184821672 184822069 -42702509 + MLT1A2 LTR MaLR 1 374 0 3256 284 57 75 chr3 184822069 184822548 -42702030 + MER110-int LTR ERV1 3530 4016 -631 22 0 0 0 chr3 184822873 184822895 -42701683 + AT_rich Low_complexity Low_complexity 1 22 0 434 172 0 81 chr3 184822907 184822994 -42701584 - MLT1J2 LTR MaLR -64 326 247 259 153 111 42 chr3 184823134 184823206 -42701372 + MER110 LTR ERV1 1 77 -414 1014 264 51 13 chr3 184823206 184823611 -42700967 + MER110 LTR ERV1 15 476 -15 266 214 204 31 chr3 184824149 184824247 -42700331 - MLT1J2 LTR MaLR 0 450 336 762 248 38 14 chr3 184824338 184824548 -42700030 - MLT1J2 LTR MaLR -235 215 1 24 32 0 0 chr3 184825502 184825533 -42699045 + AT_rich Low_complexity Low_complexity 1 31 0 27 49 0 0 chr3 184825735 184825776 -42698802 + AT_rich Low_complexity Low_complexity 1 41 0 369 143 0 0 chr3 184825987 184826043 -42698535 + MER94 DNA DNA 1 56 -78 592 287 39 0 chr3 184826144 184826325 -42698253 - MIR SINE MIR -10 252 65 7534 133 77 10 chr3 184826449 184827742 -42696836 + L1 LINE L1 1414 2792 -4773 8676 179 8 4 chr3 184827750 184829416 -42695162 + L1 LINE L1 5019 6691 -874 246 343 0 0 chr3 184829402 184829501 -42695077 - L1MC4 LINE L1 -1330 6712 6614 * 263 311 0 0 chr3 184829489 184829579 -42694999 - L1MC4 LINE L1 -1339 6703 6614 246 188 19 0 chr3 184829528 184829612 -42694966 + L1MC4 LINE L1 2006 6982 -1340 * 297 167 0 0 chr3 184829612 184829666 -42694912 + (CA)n Simple_repeat Simple_repeat 1 54 0 6194 110 25 38 chr3 184829669 184830718 -42693860 + L1MA2 LINE L1 5266 6300 -4 1429 158 106 21 chr3 184831072 184831356 -42693222 - MSTD LTR MaLR -88 308 1 1915 208 5 5 chr3 184831359 184831739 -42692839 - L1MB2 LINE L1 -309 5862 5483 241 278 86 65 chr3 184832917 184833075 -42691503 - MIR SINE MIR -68 140 29 965 320 82 16 chr3 184833685 184834113 -42690465 + L2 LINE L2 1811 2266 -1048 188 277 62 15 chr3 184834088 184834153 -42690425 + L2 LINE L2 3201 3268 -4 * 459 0 0 0 chr3 184834534 184834585 -42689993 + (TC)n Simple_repeat Simple_repeat 2 52 0 261 0 0 0 chr3 184834584 184834613 -42689965 + (TA)n Simple_repeat Simple_repeat 1 29 0 * 771 212 29 0 chr3 184835619 184835789 -42688789 - MER5B DNA MER1_type 0 178 4 2206 110 3 10 chr3 184835839 184836149 -42688429 + AluSc SINE Alu 1 308 -1 2782 81 98 0 chr3 184836320 184836728 -42687850 - LTR7 LTR ERV1 -2 448 1 2344 98 53 13 chr3 184836728 184837105 -42687473 - HERVH LTR ERV1 0 7713 7322 1367 139 19 0 chr3 184837103 184837319 -42687259 - HERVH LTR ERV1 -1894 5819 5600 * 4441 137 0 1 chr3 184837320 184837983 -42686595 - HERVH LTR ERV1 -2564 5149 4488 3343 116 6 6 chr3 184837985 184838487 -42686091 - HERVH LTR ERV1 -3720 3993 3492 824 153 18 47 chr3 184838477 184838647 -42685931 - HERVH LTR ERV1 -4423 3290 3126 * 16942 101 14 33 chr3 184838619 184841774 -42682804 - HERVH LTR ERV1 -4726 2987 1 2717 83 101 0 chr3 184841776 184842183 -42682395 - LTR7 LTR ERV1 -2 448 1 194 108 54 0 chr3 184842363 184842400 -42682178 + A-rich Low_complexity Low_complexity 2 40 0 22 0 0 0 chr3 184843383 184843405 -42681173 + AT_rich Low_complexity Low_complexity 1 22 0 4433 76 0 0 chr3 184843574 184844155 -42680423 + L1PA8 LINE L1 5592 6172 0 450 177 13 0 chr3 184844206 184844285 -42680293 + MER5B DNA MER1_type 16 95 -83 268 238 40 0 chr3 184844312 184844413 -42680165 + (TA)n Simple_repeat Simple_repeat 2 106 0 1761 147 59 24 chr3 184844454 184844794 -42679784 - MLT1C LTR MaLR -19 448 97 230 259 191 23 chr3 184845224 184845355 -42679223 - MIR SINE MIR -19 243 91 187 275 0 0 chr3 184846165 184846205 -42678373 + MIR SINE MIR 156 195 -67 1147 277 73 11 chr3 184846851 184847205 -42677373 - LTR16C LTR ERVL -4 487 112 1053 254 21 14 chr3 184848004 184848292 -42676286 - L1ME1 LINE L1 -7 6159 5870 310 276 26 0 chr3 184848564 184848680 -42675898 + (TA)n Simple_repeat Simple_repeat 1 119 0 2682 93 52 24 chr3 184848961 184849380 -42675198 + HSMAR1 DNA Mariner 3 433 -854 1197 34 7 0 chr3 184849381 184849529 -42675049 - L1PA4 LINE L1 0 6155 6007 1078 32 0 0 chr3 184849533 184849659 -42674919 - L1PA4 LINE L1 -21 6134 6009 6307 111 0 5 chr3 184849659 184850528 -42674050 + HSMAR1 DNA Mariner 423 1287 0 483 381 94 29 chr3 184850529 184851252 -42673326 + L2 LINE L2 2491 3260 -12 5364 81 5 15 chr3 184852217 184852970 -42671608 - L1PA7 LINE L1 -3 6151 5406 2973 81 3 0 chr3 184853083 184853466 -42671112 - MLT2A1 LTR ERVL -60 384 1 6893 107 27 19 chr3 184853475 184854537 -42670041 - MER11C LTR ERVK 0 1071 1 273 311 111 51 chr3 184854542 184854952 -42669626 - L2 LINE L2 -169 3144 2685 383 278 21 0 chr3 184855087 184855184 -42669394 + MER5A DNA MER1_type 14 112 -77 791 312 74 13 chr3 184855234 184855545 -42669033 - L2 LINE L2 -683 2631 2302 207 0 0 0 chr3 184855666 184855689 -42668889 + (CAA)n Simple_repeat Simple_repeat 2 24 0 852 299 99 14 chr3 184855937 184856292 -42668286 - L2 LINE L2 -1039 2275 1891 951 292 73 6 chr3 184856775 184857117 -42667461 - L2 LINE L2 -1436 1878 1514 21 57 0 0 chr3 184858546 184858581 -42665997 + AT_rich Low_complexity Low_complexity 1 35 0 338 320 52 23 chr3 184858636 184858808 -42665770 + MIR SINE MIR 85 261 -1 1001 65 14 0 chr3 184859004 184859143 -42665435 + L1P LINE L1 5093 5233 -913 216 0 0 0 chr3 184859648 184859672 -42664906 + (CA)n Simple_repeat Simple_repeat 1 24 0 287 133 0 0 chr3 184859701 184859746 -42664832 + MLT2A1 LTR ERVL 393 437 -7 639 90 0 0 chr3 184859758 184859858 -42664720 + (TA)n Simple_repeat Simple_repeat 2 101 0 1733 249 147 27 chr3 184859908 184860494 -42664084 - MLT2F LTR ERVL -3 660 5 25 0 0 0 chr3 184861937 184861962 -42662616 + AT_rich Low_complexity Low_complexity 1 25 0 231 324 29 0 chr3 184862148 184862253 -42662325 + MIR SINE MIR 128 235 -27 38 39 0 0 chr3 184862613 184862665 -42661913 + AT_rich Low_complexity Low_complexity 1 52 0 1485 232 0 10 chr3 184862773 184863075 -42661503 + AluJo SINE Alu 3 301 -11 228 21 21 64 chr3 184863304 184863351 -42661227 + (TTTA)n Simple_repeat Simple_repeat 3 47 0 18162 30 0 2 chr3 184863352 184866302 -42658276 - L1PA3 LINE L1 -5 6150 3205 607 247 0 70 chr3 184868043 184868229 -42656349 + L2 LINE L2 3138 3310 -3 21 57 0 0 chr3 184868342 184868377 -42656201 + AT_rich Low_complexity Low_complexity 1 35 0 248 338 40 99 chr3 184868542 184868844 -42655734 + L2 LINE L2 2506 2789 -525 234 0 0 0 chr3 184869864 184869890 -42654688 + (A)n Simple_repeat Simple_repeat 1 26 0 21 36 0 0 chr3 184870188 184870216 -42654362 + AT_rich Low_complexity Low_complexity 1 28 0 482 31 0 15 chr3 184870305 184870370 -42654208 + (TTCC)n Simple_repeat Simple_repeat 3 66 0 1791 246 42 17 chr3 184870632 184871111 -42653467 - MLT1F LTR MaLR 0 542 52 400 286 39 96 chr3 184871887 184872022 -42652556 - L1ME LINE L1 -298 5823 5682 2239 95 7 0 chr3 184872022 184872317 -42652261 - AluSp SINE Alu -12 301 5 400 286 39 96 chr3 184872317 184872544 -42652034 - L1ME LINE L1 -439 5682 5482 241 254 60 30 chr3 184873708 184873775 -42650803 - L2 LINE L2 -8 3264 3196 203 326 0 33 chr3 184874290 184874382 -42650196 + CT-rich Low_complexity Low_complexity 3 91 0 9870 146 16 5 chr3 184874660 184876258 -42648320 + Tigger1 DNA MER2_type 1 1616 -802 7522 162 23 29 chr3 184876263 184877736 -42646842 - Ricksha DNA DNA -18 3228 1821 705 209 16 29 chr3 184877734 184877925 -42646653 - Ricksha DNA DNA -1909 137 4 * 4951 120 29 45 chr3 184877926 184878413 -42646165 + Tigger1 DNA MER2_type 1605 2075 -343 1366 96 10 0 chr3 184878413 184878610 -42645968 + L1MA2 LINE L1 6106 6304 0 4951 120 29 45 chr3 184878610 184878949 -42645629 + Tigger1 DNA MER2_type 2075 2418 0 458 277 186 14 chr3 184878967 184879187 -42645391 + MIR SINE MIR 4 261 -1 214 283 80 35 chr3 184879240 184879353 -42645225 - L3 LINE CR1 -95 1482 1365 199 320 72 32 chr3 184879383 184879508 -42645070 - MIR SINE MIR -23 239 110 214 394 19 0 chr3 184881118 184881222 -42643356 - MIR SINE MIR -71 137 32 182 264 19 38 chr3 184881709 184881762 -42642816 + L2 LINE L2 3201 3252 -61 22 35 0 0 chr3 184882246 184882275 -42642303 + AT_rich Low_complexity Low_complexity 1 29 0 2128 99 3 0 chr3 184882278 184882600 -42641978 + AluSp SINE Alu 1 323 0 182 403 0 0 chr3 184882600 184882667 -42641911 - L2 LINE L2 -10 3262 3196 21 0 0 0 chr3 184883405 184883426 -42641152 + AT_rich Low_complexity Low_complexity 1 21 0 268 160 0 20 chr3 184884180 184884230 -42640348 - L2 LINE L2 -2 3311 3263 1830 331 85 30 chr3 184884583 184886635 -42637943 - ERVL LTR ERVL -1069 4695 2433 359 258 0 11 chr3 184886636 184886725 -42637853 - ERVL LTR ERVL -3541 2223 2136 1308 283 118 30 chr3 184886725 184887252 -42637326 + MLT1G1 LTR MaLR 1 573 -22 470 323 47 22 chr3 184887354 184887586 -42636992 - ERVL LTR ERVL -3746 2018 1781 1503 190 3 27 chr3 184887889 184888184 -42636394 - AluJb SINE Alu -24 288 1 282 369 19 6 chr3 184888835 184888995 -42635583 - ERVL LTR ERVL -4973 681 520 1230 311 43 21 chr3 184889452 184889918 -42634660 - LTR67 LTR ERVL -1 556 81 2146 109 11 64 chr3 184890878 184891253 -42633325 + THE1A LTR MaLR 1 355 0 11299 103 6 1 chr3 184891253 184892825 -42631753 + THE1A-int LTR MaLR 1 1580 0 2250 138 11 8 chr3 184892825 184893179 -42631399 + THE1A LTR MaLR 1 355 0 231 146 0 0 chr3 184893693 184893734 -42630844 + (TA)n Simple_repeat Simple_repeat 1 41 0 314 202 158 14 chr3 184893841 184893968 -42630610 - L1M4 LINE L1 -504 5663 5509 308 261 87 33 chr3 184894001 184894218 -42630360 - L1M4 LINE L1 -747 5382 5171 1908 135 55 52 chr3 184894326 184894689 -42629889 + THE1B LTR MaLR 1 364 0 432 285 27 11 chr3 184895616 184895802 -42628776 - L1M4 LINE L1 -2137 3992 3804 297 290 94 0 chr3 184896251 184896389 -42628189 - L1M4 LINE L1 -5948 171 21 791 281 36 20 chr3 184897059 184897312 -42627266 - MIR SINE MIR 0 262 6 290 326 0 12 chr3 184897686 184897772 -42626806 - MIR3 SINE MIR -24 184 100 236 298 12 12 chr3 184898044 184898128 -42626450 - MLT1J2 LTR MaLR -25 425 342 21 36 0 0 chr3 184898706 184898734 -42625844 + AT_rich Low_complexity Low_complexity 1 28 0 792 177 0 0 chr3 184898999 184899129 -42625449 + FLAM_C SINE Alu 1 130 -3 1451 196 17 76 chr3 184899170 184899527 -42625051 + MLT2B3 LTR ERVL 55 390 -164 4469 157 16 16 chr3 184899630 184900469 -42624109 - L1MA5 LINE L1 0 6300 5462 342 0 0 0 chr3 184901305 184901343 -42623235 + (CA)n Simple_repeat Simple_repeat 1 38 0 2184 228 70 26 chr3 184902727 184903648 -42620930 - L1MC4 LINE L1 -141 7901 6780 3102 158 42 0 chr3 184903723 184904250 -42620328 - MER34C LTR ERV1 0 585 37 360 0 0 0 chr3 184904272 184904312 -42620266 + (CA)n Simple_repeat Simple_repeat 2 41 0 608 239 51 27 chr3 184904397 184904741 -42619837 + MER39 LTR ERV1 307 565 0 551 291 84 0 chr3 184904741 184904944 -42619634 - L1MC4 LINE L1 -1361 6681 6462 22 35 0 0 chr3 184905930 184905959 -42618619 + AT_rich Low_complexity Low_complexity 1 29 0 1289 71 0 0 chr3 184906044 184906225 -42618353 - AluY SINE Alu 0 309 129 2400 86 3 3 chr3 184907103 184907416 -42617162 + AluSq SINE Alu 1 313 0 481 249 82 78 chr3 184907496 184907945 -42616633 - LTR37B LTR ERV1 -11 457 7 205 362 87 0 chr3 184908175 184908302 -42616276 - MIR3 SINE MIR -1 207 70 2256 108 0 13 chr3 184908937 184909251 -42615327 + AluSx SINE Alu 1 310 -2 212 257 110 64 chr3 184911296 184911405 -42613173 - L3 LINE CR1 -214 1363 1250 248 238 139 40 chr3 184912176 184912277 -42612301 - MIR SINE MIR -66 142 32 7472 35 3 1 chr3 184913172 184914235 -42610343 + L1PA5 LINE L1 5090 6154 0 234 296 0 28 chr3 184914357 184914428 -42610150 + L2 LINE L2 3185 3253 -60 189 262 0 0 chr3 184914512 184914573 -42610005 + CT-rich Low_complexity Low_complexity 4 64 0 1913 148 80 12 chr3 184914591 184914930 -42609648 - THE1B LTR MaLR -2 362 1 11459 97 9 5 chr3 184914930 184915097 -42609481 - THE1B-int LTR MaLR 0 1580 1415 2083 131 0 0 chr3 184915097 184915388 -42609190 + AluSx SINE Alu 17 307 -5 11459 97 9 5 chr3 184915388 184916793 -42607785 - THE1B-int LTR MaLR -165 1415 1 2192 122 73 14 chr3 184916793 184917137 -42607441 - THE1B LTR MaLR 0 364 1 195 196 118 0 chr3 184917195 184917246 -42607332 + L2 LINE L2 3215 3271 -1 212 267 273 7 chr3 184917891 184918041 -42606537 + MIR SINE MIR 20 209 -53 189 0 0 0 chr3 184918105 184918126 -42606452 + (TG)n Simple_repeat Simple_repeat 1 21 0 21 36 0 0 chr3 184918542 184918570 -42606008 + AT_rich Low_complexity Low_complexity 1 28 0 1459 225 35 14 chr3 184919577 184919924 -42604654 - MLT1A1 LTR MaLR -11 354 1 704 304 99 41 chr3 184920093 184920455 -42604123 + MLT1J LTR MaLR 13 395 -116 367 233 23 23 chr3 184921537 184921709 -42602869 + (TA)n Simple_repeat Simple_repeat 1 172 0 402 319 35 0 chr3 184921960 184922073 -42602505 + L2 LINE L2 3197 3313 0 1410 135 0 0 chr3 184922201 184922431 -42602147 + L1MA5A LINE L1 6065 6294 -3 814 216 0 0 chr3 184922445 184922593 -42601985 + FAM SINE Alu 11 158 -27 49 18 0 0 chr3 184922593 184922649 -42601929 + AT_rich Low_complexity Low_complexity 1 56 0 639 346 14 1 chr3 184923517 184923749 -42600829 + MIR SINE MIR 9 241 -21 392 289 178 20 chr3 184923782 184923934 -42600644 - MIR SINE MIR -57 205 30 1100 256 25 38 chr3 184924005 184924322 -42600256 - MER21B LTR ERV1 -64 799 487 536 202 48 0 chr3 184924422 184924526 -42600052 - MER21B LTR ERV1 -732 131 23 396 329 13 25 chr3 184924625 184924783 -42599795 + MIR SINE MIR 48 203 -59 283 259 138 40 chr3 184925224 184925398 -42599180 - MIR3 SINE MIR 0 208 18 228 327 60 87 chr3 184925675 184925941 -42598637 + L2 LINE L2 2255 2513 -801 2201 101 9 25 chr3 184926361 184926678 -42597900 - AluSq SINE Alu -1 312 1 243 320 77 0 chr3 184927058 184927136 -42597442 - L2 LINE L2 -16 3256 3173 1243 321 120 27 chr3 184928033 184929059 -42595519 + L2 LINE L2 2040 3176 -137 2624 228 7 47 chr3 184929122 184929802 -42594776 + MER82 DNA MER2_type 1 653 0 222 232 14 72 chr3 184929843 184929912 -42594666 - L2 LINE L2 -984 2330 2266 216 348 0 0 chr3 184930045 184930114 -42594464 + L2 LINE L2 3227 3295 -18 2030 62 0 55 chr3 184930480 184930754 -42593824 + AluY SINE Alu 35 293 -18 410 175 249 37 chr3 184931983 184932111 -42592467 + MIR SINE MIR 2 152 -56 3969 224 28 6 chr3 184932135 184932928 -42591650 - MER21B LTR ERV1 -11 852 43 416 224 0 0 chr3 184932926 184933002 -42591576 - MER21B LTR ERV1 -769 94 19 * 327 214 0 0 chr3 184933036 184933092 -42591486 - MER21B LTR ERV1 -796 67 12 272 268 0 0 chr3 184933132 184933188 -42591390 - MER21B LTR ERV1 -796 67 12 692 293 6 12 chr3 184933382 184933549 -42591029 - MER5B DNA MER1_type -3 175 10 216 67 0 0 chr3 184934032 184934062 -42590516 + (TG)n Simple_repeat Simple_repeat 1 30 0 441 0 0 0 chr3 184934876 184934925 -42589653 + (CA)n Simple_repeat Simple_repeat 1 49 0 470 246 71 38 chr3 184935233 184935444 -42589134 + L1MC4a LINE L1 5693 5910 -1898 798 323 43 3 chr3 184937462 184937765 -42586813 - MER102a DNA MER1_type -5 325 11 214 247 65 0 chr3 184938617 184938694 -42585884 + L2 LINE L2 3190 3271 -1 22 70 0 0 chr3 184939729 184939772 -42584806 + AT_rich Low_complexity Low_complexity 1 43 0 880 164 149 5 chr3 184940298 184940506 -42584072 - MER33 DNA MER1_type -82 242 5 687 304 19 19 chr3 184940700 184940960 -42583618 + MIR SINE MIR 2 261 -1 195 329 29 0 chr3 184940966 184941036 -42583542 - L2 LINE L2 -793 2521 2450 449 299 155 54 chr3 184941146 184941481 -42583097 + L2 LINE L2 2904 3272 0 3142 175 65 25 chr3 184942421 184943062 -42581516 + MER39 LTR ERV1 1 707 0 468 244 171 6 chr3 184943470 184943646 -42580932 + L3 LINE CR1 766 970 -607 361 339 99 6 chr3 184944356 184944498 -42580080 + MER5A DNA MER1_type 2 164 -25 1051 134 0 134 chr3 184944498 184944751 -42579827 + MER20 DNA MER1_type 1 219 0 361 339 99 6 chr3 184944751 184944779 -42579799 + MER5A DNA MER1_type 164 188 -1 1360 259 152 54 chr3 184946395 184947028 -42577550 - MER21B LTR ERV1 -129 734 40 370 354 66 42 chr3 184947104 184947514 -42577064 - L2 LINE L2 -15 3298 2879 26 98 0 0 chr3 184947836 184947918 -42576660 + AT_rich Low_complexity Low_complexity 1 82 0 21 0 0 0 chr3 184948051 184948072 -42576506 + AT_rich Low_complexity Low_complexity 1 21 0 358 299 115 47 chr3 184948482 184948927 -42575651 - MARNA DNA Mariner -92 494 20 198 0 0 0 chr3 184949211 184949233 -42575345 + (TATATG)n Simple_repeat Simple_repeat 4 25 0 195 42 0 0 chr3 184949298 184949322 -42575256 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 3493 208 26 35 chr3 184950167 184950931 -42573647 + L1MCa LINE L1 22 778 -5648 1077 201 12 25 chr3 184950931 184951271 -42573307 + L1MCa LINE L1 2244 2477 -3949 543 208 46 15 chr3 184951273 184951403 -42573175 + MLT1A1 LTR MaLR 3 136 -229 418 139 0 0 chr3 184951403 184951475 -42573103 - Alu SINE Alu -9 301 230 674 239 28 23 chr3 184951497 184951673 -42572905 + MLT1A1 LTR MaLR 189 365 0 2729 236 32 9 chr3 184951673 184952320 -42572258 + MLT1A1-int LTR MaLR 1 662 -1073 344 290 21 0 chr3 184952494 184952587 -42571991 + MLT1A1-int LTR MaLR 686 780 -955 3074 158 49 20 chr3 184952766 184953316 -42571262 - MER50 LTR ERV1 -168 566 1 1895 218 39 2 chr3 184953317 184953729 -42570849 + MLT1A1-int LTR MaLR 1309 1735 0 1320 216 109 9 chr3 184953732 184954061 -42570517 + MLT1A1 LTR MaLR 4 365 0 1239 154 20 0 chr3 184954106 184954307 -42570271 + MER2 DNA MER2_type 6 210 -135 192 143 0 0 chr3 184954353 184954362 -42570216 + (TA)n Simple_repeat Simple_repeat 2 10 -26 2262 144 3 3 chr3 184954362 184954730 -42569848 - L1PB1 LINE L1 -1 6150 5783 192 143 0 0 chr3 184954730 184954755 -42569823 + (TA)n Simple_repeat Simple_repeat 9 36 0 228 193 18 0 chr3 184954755 184954812 -42569766 - L1MCa LINE L1 -4362 2064 2007 * 259 247 47 0 chr3 184954805 184954890 -42569688 + L1MC4 LINE L1 6615 6703 -1339 233 218 46 23 chr3 184954923 184955010 -42569568 + L1MC4 LINE L1 6615 6703 -1339 253 212 71 24 chr3 184955043 184955128 -42569450 + L1MC4 LINE L1 6615 6703 -1339 258 192 0 0 chr3 184955128 184955180 -42569398 + (TA)n Simple_repeat Simple_repeat 2 53 0 296 211 22 22 chr3 184955184 184955274 -42569304 + L1MC4 LINE L1 6614 6703 -1339 238 235 47 24 chr3 184955279 184955364 -42569214 + L1MC4 LINE L1 6617 6703 -1339 518 144 16 72 chr3 184955392 184955517 -42569061 + MER2 DNA MER2_type 82 199 -146 459 52 0 0 chr3 184955528 184955586 -42568992 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 13803 193 22 11 chr3 184955583 184960447 -42564131 - L1P5 LINE L1 -378 6489 1567 935 209 29 0 chr3 184960447 184960653 -42563925 - LTR30 LTR ERV1 0 722 511 4146 139 7 6 chr3 184960676 184961359 -42563219 - HERV30 LTR ERV1 -1065 7192 6509 26903 96 9 2 chr3 184961432 184967816 -42556762 - HERV30 LTR ERV1 -1748 6509 2 4650 119 14 1 chr3 184967816 184968529 -42556049 - LTR30 LTR ERV1 0 722 1 1113 186 13 0 chr3 184968529 184968765 -42555813 - L1P5 LINE L1 -5293 1570 1332 2877 218 120 19 chr3 184968782 184969834 -42554744 - L1P5 LINE L1 -5700 1163 6 332 227 0 0 chr3 184969862 184969928 -42554650 + MER2 DNA MER2_type 279 344 -1 1140 282 17 5 chr3 184969928 184970332 -42554246 + L1M4 LINE L1 2335 2743 -3403 3592 138 8 5 chr3 184970340 184970934 -42553644 + L1MC1 LINE L1 5738 6333 0 846 160 0 0 chr3 184972575 184972700 -42551878 - FLAM_C SINE Alu -18 125 1 1544 224 71 16 chr3 184972861 184973390 -42551188 - MLT1E1 LTR MaLR 0 654 16 238 279 47 12 chr3 184974956 184975042 -42549536 - MER102a DNA MER1_type 0 330 242 33 56 0 0 chr3 184975495 184975549 -42549029 + AT_rich Low_complexity Low_complexity 1 54 0 2481 65 7 0 chr3 184975620 184975928 -42548650 - AluSp SINE Alu -2 311 2 411 325 83 60 chr3 184976073 184976387 -42548191 + HAL1 LINE L1 264 584 -1923 25 65 0 0 chr3 184976504 184976550 -42548028 + AT_rich Low_complexity Low_complexity 1 46 0 183 80 0 0 chr3 184976956 184976981 -42547597 + (T)n Simple_repeat Simple_repeat 1 25 0 238 295 14 22 chr3 184977153 184977292 -42547286 - L1M4 LINE L1 -2647 3499 3362 370 276 177 32 chr3 184977367 184977650 -42546928 - L1M4 LINE L1 -2945 3201 2878 182 114 0 29 chr3 184979549 184979584 -42544994 + (TTTTC)n Simple_repeat Simple_repeat 5 38 0 213 281 18 0 chr3 184979611 184979668 -42544910 + CT-rich Low_complexity Low_complexity 1 58 0 29 28 0 0 chr3 184979734 184979770 -42544808 + AT_rich Low_complexity Low_complexity 1 36 0 800 281 10 0 chr3 184982812 184983015 -42541563 - MIR SINE MIR -57 205 1 262 326 58 7 chr3 184983135 184983273 -42541305 - MIR SINE MIR -6 256 112 27 29 0 0 chr3 184983507 184983541 -42541037 + AT_rich Low_complexity Low_complexity 1 34 0 1207 338 83 24 chr3 184983944 184984766 -42539812 + L2 LINE L2 2024 2893 -421 260 266 177 26 chr3 184985655 184985768 -42538810 + MIR SINE MIR 120 249 -13 1114 172 5 186 chr3 184986198 184986628 -42537950 + MLT1A1 LTR MaLR 11 362 -3 1997 122 14 3 chr3 184986995 184987283 -42537295 - AluSx SINE Alu -21 291 1 1134 262 131 5 chr3 184987829 184988241 -42536337 + MER110A LTR ERV1 1 464 -4 459 183 54 21 chr3 184989552 184989645 -42534933 + MER77 LTR ERV1 40 135 -470 11391 199 20 15 chr3 184989651 184993351 -42531227 + L1PA16 LINE L1 911 4634 -2215 4983 148 30 17 chr3 184993365 184993687 -42530891 + L1PA16 LINE L1 5659 5975 -894 2181 120 0 7 chr3 184993687 184993988 -42530590 + AluSq SINE Alu 1 299 -14 4983 148 30 17 chr3 184993988 184994847 -42529731 + L1PA16 LINE L1 5975 6860 -9 1522 250 65 25 chr3 184994872 184995320 -42529258 + MER77 LTR ERV1 132 597 -8 24 0 0 0 chr3 184997171 184997195 -42527383 + AT_rich Low_complexity Low_complexity 1 24 0 770 267 47 40 chr3 184997476 184997810 -42526768 - MER21B LTR ERV1 -4 601 406 2430 86 0 6 chr3 184997938 184998251 -42526327 - AluY SINE Alu 0 311 1 2109 201 44 5 chr3 184998419 184998831 -42525747 + MSTA LTR MaLR 1 428 0 8327 162 54 22 chr3 184998831 185000432 -42524146 + MSTA-int LTR MaLR 1 1651 0 2121 180 50 24 chr3 185000432 185000849 -42523729 + MSTA LTR MaLR 1 428 0 201 306 20 0 chr3 185001406 185001455 -42523123 - L2 LINE L2 -18 3295 3246 479 159 0 55 chr3 185001734 185001916 -42522662 + (TA)n Simple_repeat Simple_repeat 2 173 0 244 239 14 14 chr3 185001919 185001990 -42522588 + (CATATA)n Simple_repeat Simple_repeat 1 71 0 1789 173 128 5 chr3 185002099 185002474 -42522104 - MSTB LTR MaLR -5 421 1 29 47 0 0 chr3 185002828 185002871 -42521707 + AT_rich Low_complexity Low_complexity 1 43 0 202 250 62 62 chr3 185003134 185003214 -42521364 - L2 LINE L2 -20 3293 3214 194 329 14 14 chr3 185003442 185003512 -42521066 + L2 LINE L2 2244 2313 -1001 249 369 102 31 chr3 185003582 185003964 -42520614 + L2 LINE L2 2455 2863 -451 1244 130 42 0 chr3 185003977 185004192 -42520386 - Tigger7 DNA MER2_type -1 2490 2267 363 136 0 0 chr3 185004192 185004251 -42520327 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 1621 223 95 79 chr3 185004696 185005697 -42518881 - LTR28 LTR ERV1 0 1020 1 2764 181 69 49 chr3 185005911 185006624 -42517954 + LTR8A LTR ERV1 1 727 0 271 333 20 0 chr3 185007043 185007145 -42517433 + G-rich Low_complexity Low_complexity 2 105 0 23 54 0 0 chr3 185009751 185009788 -42514790 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr3 185009864 185009902 -42514676 + AT_rich Low_complexity Low_complexity 1 38 0 404 263 183 7 chr3 185010043 185010180 -42514398 - MER5A DNA MER1_type -1 188 28 241 258 15 15 chr3 185010299 185010365 -42514213 - MLT1J LTR MaLR -212 299 234 2743 172 77 44 chr3 185010625 185011329 -42513249 + LTR8A LTR ERV1 1 727 0 5371 66 0 30 chr3 185012136 185012848 -42511730 + LTR8 LTR ERV1 1 691 0 1934 262 89 21 chr3 185013155 185014044 -42510534 - L1MEc LINE L1 -4601 1795 847 612 255 31 16 chr3 185014060 185014252 -42510326 - L1MEc LINE L1 -6185 211 17 2092 121 3 3 chr3 185015086 185015368 -42509210 + AluSp SINE Alu 1 282 -31 212 0 36 0 chr3 185015381 185015409 -42509169 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 460 345 97 46 chr3 185017229 185017956 -42506622 - L2 LINE L2 -33 3239 2477 266 247 14 27 chr3 185017956 185018024 -42506554 - L2 LINE L2 -1884 1430 1364 468 288 85 7 chr3 185018024 185018177 -42506401 - MER5B DNA MER1_type -1 177 13 346 362 83 18 chr3 185018260 185018478 -42506100 - L2 LINE L2 -2145 1169 938 247 259 122 61 chr3 185018480 185018611 -42505967 - L2 LINE L2 -2718 596 458 231 226 0 0 chr3 185018735 185018788 -42505790 + (TTA)n Simple_repeat Simple_repeat 2 54 0 605 189 0 16 chr3 185019004 185019126 -42505452 - LTR2B LTR ERV1 0 490 371 11782 74 1 6 chr3 185019126 185020662 -42503916 + Harlequin LTR ERV1 5369 6896 0 1846 210 66 25 chr3 185020682 185021121 -42503457 + LTR2B LTR ERV1 34 490 0 819 232 116 17 chr3 185021167 185021400 -42503178 + MIR SINE MIR 4 259 -3 320 264 141 31 chr3 185021447 185021610 -42502968 + L2 LINE L2 2691 2871 -443 295 266 108 22 chr3 185023368 185023507 -42501071 + L2 LINE L2 3159 3309 -4 198 0 0 0 chr3 185023734 185023756 -42500822 + (CAAAAA)n Simple_repeat Simple_repeat 4 25 0 347 283 82 25 chr3 185023786 185023945 -42500633 - MIR SINE MIR -14 248 81 257 367 44 19 chr3 185024600 185024758 -42499820 - MIR SINE MIR -72 190 29 193 329 57 3 chr3 185024896 185025035 -42499543 - MIR SINE MIR -12 250 67 3325 186 37 25 chr3 185025064 185025817 -42498761 - L1MA10 LINE L1 -14 6320 5559 1893 156 93 86 chr3 185025817 185026303 -42498275 - LTR2B LTR ERV1 -1 489 1 4434 198 31 15 chr3 185026307 185026894 -42497684 - L1MA10 LINE L1 -743 5403 4946 2312 92 3 3 chr3 185026894 185027188 -42497390 + AluSp SINE Alu 1 294 -19 4434 198 31 15 chr3 185027188 185027845 -42496733 - L1MA10 LINE L1 -1200 4946 4301 750 190 66 9 chr3 185027972 185028198 -42496380 + L1MB7 LINE L1 4326 4564 -1582 1034 256 51 63 chr3 185028199 185028710 -42495868 + MLT1D LTR MaLR 1 505 0 3783 199 60 20 chr3 185028710 185030270 -42494308 + L1MB7 LINE L1 4561 6175 -9 289 226 16 0 chr3 185030991 185031053 -42493525 - MER5A DNA MER1_type -86 103 41 530 239 90 30 chr3 185031295 185031462 -42493116 + MER5B DNA MER1_type 2 178 0 25 0 0 0 chr3 185031755 185031780 -42492798 + AT_rich Low_complexity Low_complexity 1 25 0 1788 155 71 11 chr3 185032252 185032606 -42491972 - THE1C LTR MaLR 0 375 1 27 0 0 0 chr3 185033288 185033315 -42491263 + AT_rich Low_complexity Low_complexity 1 27 0 296 288 81 0 chr3 185033777 185033888 -42490690 + L2 LINE L2 3142 3261 -52 401 328 45 45 chr3 185033913 185034245 -42490333 - L2 LINE L2 -1147 2167 1836 928 130 0 0 chr3 185034346 185034492 -42490086 + L1MA3 LINE L1 6115 6260 -45 1355 100 17 49 chr3 185035552 185035692 -42488886 - L1M1 LINE L1 -743 5403 5260 2238 119 0 0 chr3 185035692 185035995 -42488583 - AluSp SINE Alu -10 303 1 1355 100 17 49 chr3 185035995 185036211 -42488367 - L1M1 LINE L1 -886 5260 5115 496 86 0 12 chr3 185036214 185036295 -42488283 + L1MA1 LINE L1 6219 6298 -4 24 0 0 0 chr3 185036297 185036321 -42488257 + AT_rich Low_complexity Low_complexity 1 24 0 2843 7 0 0 chr3 185036488 185036795 -42487783 + AluYa5 SINE Alu 1 307 -4 1558 196 11 0 chr3 185037015 185037285 -42487293 + AluSx SINE Alu 1 273 -39 261 0 0 0 chr3 185037286 185037315 -42487263 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 183 303 61 0 chr3 185037614 185037680 -42486898 + L3 LINE CR1 1464 1533 -44 245 197 0 82 chr3 185037790 185037851 -42486727 - MLT2D LTR ERVL -65 349 294 21 0 0 0 chr3 185039100 185039121 -42485457 + AT_rich Low_complexity Low_complexity 1 21 0 328 361 71 26 chr3 185039357 185039512 -42485066 - L2 LINE L2 -8 3264 3103 629 324 49 25 chr3 185039968 185040212 -42484366 - MIR SINE MIR -10 252 3 239 323 32 11 chr3 185040928 185041021 -42483557 - MIR SINE MIR -114 148 54 398 309 0 0 chr3 185041591 185041688 -42482890 + MLT1K LTR MaLR 2 98 -490 973 273 113 3 chr3 185041737 185042048 -42482530 + MLT1K LTR MaLR 239 583 -5 262 402 37 0 chr3 185043810 185043974 -42480604 + MIR3 SINE MIR 38 207 -1 2653 105 11 0 chr3 185044380 185044751 -42479827 + THE1C LTR MaLR 1 375 0 9479 133 34 17 chr3 185044751 185046304 -42478274 + THE1C-int LTR MaLR 1 1580 0 2551 130 3 0 chr3 185046304 185046673 -42477905 + THE1C LTR MaLR 5 375 0 239 0 32 0 chr3 185046698 185046729 -42477849 + (TTG)n Simple_repeat Simple_repeat 2 33 0 233 194 0 16 chr3 185047679 185047741 -42476837 + (CATA)n Simple_repeat Simple_repeat 4 64 0 558 342 85 29 chr3 185047847 185048406 -42476172 + L1MEd LINE L1 967 1590 -900 216 0 0 0 chr3 185048406 185048430 -42476148 + (A)n Simple_repeat Simple_repeat 1 24 0 284 197 30 0 chr3 185049422 185049488 -42475090 - MER116 DNA Mariner -12 68 1 195 42 0 0 chr3 185050063 185050087 -42474491 + (TG)n Simple_repeat Simple_repeat 2 25 0 22 35 0 0 chr3 185050517 185050546 -42474032 + AT_rich Low_complexity Low_complexity 1 29 0 434 310 106 26 chr3 185051281 185051507 -42473071 + MIR SINE MIR 8 251 -11 1164 130 14 74 chr3 185053250 185053466 -42471112 + AluSg/x SINE Alu 97 299 -13 2072 234 43 11 chr3 185054241 185054702 -42469876 - MER82 DNA MER2_type 0 653 178 5865 8 0 0 chr3 185054703 185055360 -42469218 + L1HS LINE L1 5499 6155 0 1487 176 0 16 chr3 185055409 185055664 -42468914 + AluJb SINE Alu 1 251 -61 225 0 0 0 chr3 185055664 185055689 -42468889 + (A)n Simple_repeat Simple_repeat 1 25 0 684 232 0 7 chr3 185055689 185055827 -42468751 - MER82 DNA MER2_type -516 137 1 295 41 41 0 chr3 185055970 185056019 -42468559 + (TG)n Simple_repeat Simple_repeat 2 52 0 24 67 0 0 chr3 185056731 185056776 -42467802 + AT_rich Low_complexity Low_complexity 1 45 0 242 269 0 0 chr3 185056829 185056881 -42467697 - L2 LINE L2 -5 3267 3216 638 281 14 47 chr3 185057033 185057239 -42467339 + MIR SINE MIR 56 257 -5 22 0 0 0 chr3 185057395 185057417 -42467161 + AT_rich Low_complexity Low_complexity 1 22 0 382 292 44 69 chr3 185058314 185058629 -42465949 + MLT1L LTR MaLR 112 507 -101 2202 103 7 3 chr3 185058629 185058931 -42465647 - AluSc SINE Alu -6 303 1 382 292 44 69 chr3 185058931 185059031 -42465547 + MLT1L LTR MaLR 507 608 0 267 271 33 90 chr3 185059500 185059622 -42464956 + MIR SINE MIR 72 186 -76 183 375 90 20 chr3 185060053 185060298 -42464280 + L2 LINE L2 2581 2842 -472 219 189 0 0 chr3 185060880 185060933 -42463645 + GA-rich Low_complexity Low_complexity 2 54 0 620 278 151 5 chr3 185061070 185061282 -42463296 - MIR SINE MIR 0 262 20 488 106 12 0 chr3 185065016 185065101 -42459477 + (TA)n Simple_repeat Simple_repeat 2 87 0 2125 120 7 7 chr3 185065279 185065579 -42458999 + AluSx SINE Alu 1 300 -12 2985 210 22 3 chr3 185065591 185066309 -42458269 - L1PA16 LINE L1 -1631 4515 3784 4978 165 23 8 chr3 185066313 185066941 -42457637 + L1PA16 LINE L1 4522 5139 -1027 1963 168 97 8 chr3 185066941 185067334 -42457244 + MSTA LTR MaLR 1 428 0 4978 165 23 8 chr3 185067334 185068324 -42456254 + L1PA16 LINE L1 5139 6163 -3 216 0 0 0 chr3 185068584 185068608 -42455970 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2124 107 0 58 chr3 185070235 185070563 -42454015 - AluY SINE Alu 0 311 3 978 298 65 22 chr3 185070695 185071555 -42453023 - L1 LINE L1 -2312 3834 2938 1409 192 11 38 chr3 185071583 185071849 -42452729 - AluJo SINE Alu -53 259 1 22 0 0 0 chr3 185071852 185071874 -42452704 + AT_rich Low_complexity Low_complexity 1 22 0 1925 159 50 19 chr3 185072288 185072652 -42451926 + THE1C LTR MaLR 1 375 0 6561 104 71 197 chr3 185072652 185074460 -42450118 + THE1C-int LTR MaLR 1 1580 0 1952 143 55 22 chr3 185074460 185074823 -42449755 + THE1C LTR MaLR 1 375 0 402 149 0 0 chr3 185074832 185074899 -42449679 - MLT1B LTR MaLR 0 390 324 616 192 103 7 chr3 185074965 185075111 -42449467 - MLT1B LTR MaLR -228 162 3 1280 195 42 42 chr3 185075120 185075237 -42449341 - MER44D DNA MER2_type -1883 608 492 252 0 0 0 chr3 185075237 185075265 -42449313 + (CA)n Simple_repeat Simple_repeat 2 29 0 1280 195 42 42 chr3 185075265 185075481 -42449097 - MER44D DNA MER2_type -1998 493 5 261 317 58 45 chr3 185075946 185076605 -42447973 + L1MEd LINE L1 545 1211 -4908 331 280 30 15 chr3 185076687 185076819 -42447759 + L1MEd LINE L1 1409 1542 -4768 184 29 29 29 chr3 185076824 185076858 -42447720 + (TAAAA)n Simple_repeat Simple_repeat 2 35 0 824 259 5 0 chr3 185076930 185077119 -42447459 + MER82 DNA MER2_type 1 190 -463 330 261 46 8 chr3 185077498 185077628 -42446950 + MER82 DNA MER2_type 69 203 -450 1617 148 4 0 chr3 185077677 185077921 -42446657 - AluSx SINE Alu -37 275 31 2030 221 22 13 chr3 185077926 185078378 -42446200 + MER82 DNA MER2_type 198 653 0 905 320 64 48 chr3 185078870 185079558 -42445020 + L1MEd LINE L1 2234 2936 -3193 14967 34 0 1 chr3 185079558 185082127 -42442451 - L1PA4 LINE L1 -1 6154 3587 905 320 64 48 chr3 185082127 185082173 -42442405 + L1MEd LINE L1 2936 2980 -3149 25 31 0 0 chr3 185082243 185082275 -42442303 + AT_rich Low_complexity Low_complexity 1 32 0 909 211 15 5 chr3 185082404 185082603 -42441975 - Tigger7 DNA MER2_type -2284 203 3 464 231 129 65 chr3 185082672 185082760 -42441818 - MIR SINE MIR -63 199 118 2011 127 30 0 chr3 185082760 185083060 -42441518 + AluSx SINE Alu 1 309 -3 464 231 129 65 chr3 185083060 185083157 -42441421 - MIR SINE MIR -144 118 2 2570 55 3 3 chr3 185083442 185083752 -42440826 + AluSp SINE Alu 1 310 -3 341 179 77 17 chr3 185084184 185084301 -42440277 - L1MC5 LINE L1 -229 7732 7609 1119 185 22 83 chr3 185084404 185084717 -42439861 - L1ME1 LINE L1 -6 6160 5867 1781 150 10 49 chr3 185084767 185085074 -42439504 - AluJo SINE Alu -17 295 1 28 0 0 0 chr3 185085083 185085111 -42439467 + AT_rich Low_complexity Low_complexity 1 28 0 1630 163 7 34 chr3 185085115 185085409 -42439169 - AluJo SINE Alu -26 286 1 1261 208 23 11 chr3 185085431 185085696 -42438882 + AluSx SINE Alu 1 268 -44 32 81 0 0 chr3 185086653 185086727 -42437851 + AT_rich Low_complexity Low_complexity 1 74 0 1789 167 10 3 chr3 185086799 185087093 -42437485 - AluJo SINE Alu -16 296 1 2026 115 3 11 chr3 185087192 185087509 -42437069 - AluSx SINE Alu 0 315 1 2053 136 3 0 chr3 185087516 185087802 -42436776 - AluSx SINE Alu -25 287 1 31 68 0 0 chr3 185087885 185087944 -42436634 + AT_rich Low_complexity Low_complexity 1 59 0 26 74 0 0 chr3 185088342 185088396 -42436182 + AT_rich Low_complexity Low_complexity 1 54 0 984 49 25 0 chr3 185088651 185088773 -42435805 + AluSg SINE Alu 1 125 -185 1197 83 0 0 chr3 185088875 185089020 -42435558 - AluSx SINE Alu -151 161 17 525 244 35 0 chr3 185089065 185089180 -42435398 + MIR SINE MIR 21 139 -123 650 192 45 58 chr3 185089281 185089505 -42435073 + MER106A DNA MER1_type 16 236 0 640 106 58 10 chr3 185089655 185089759 -42434819 - HY1 scRNA scRNA -3 109 1 30 45 0 0 chr3 185090543 185090587 -42433991 + AT_rich Low_complexity Low_complexity 1 44 0 2230 107 3 13 chr3 185090601 185090900 -42433678 - AluSq SINE Alu -17 296 1 813 205 9 79 chr3 185091023 185091252 -42433326 - AluJb SINE Alu -16 296 84 202 189 0 0 chr3 185092078 185092115 -42432463 + (CGGGG)n Simple_repeat Simple_repeat 1 37 0 250 227 53 13 chr3 185092870 185092945 -42431633 - MIR SINE MIR -7 255 178 564 172 8 94 chr3 185093808 185093936 -42430642 - FLAM_A SINE Alu -16 117 1 1015 219 60 63 chr3 185094355 185094721 -42429857 + MLT1A1 LTR MaLR 1 365 0 2357 74 6 10 chr3 185094764 185095076 -42429502 - AluY SINE Alu 0 311 1 267 247 191 0 chr3 185095103 185095192 -42429386 + HAL1 LINE L1 808 913 -1594 1718 189 70 11 chr3 185095413 185095784 -42428794 - MLT1D LTR MaLR -112 393 1 303 28 0 0 chr3 185096148 185096184 -42428394 + (ATTG)n Simple_repeat Simple_repeat 2 37 0 1667 110 84 4 chr3 185096184 185096340 -42428238 - AluSx SINE Alu -25 287 100 180 0 0 0 chr3 185096340 185096360 -42428218 + (TTTTG)n Simple_repeat Simple_repeat 1 20 0 1667 110 84 4 chr3 185096360 185096466 -42428112 - AluSx SINE Alu -212 100 4 1026 136 12 19 chr3 185096496 185096658 -42427920 + FRAM SINE Alu 1 161 -5 2495 50 3 0 chr3 185097212 185097515 -42427063 + AluY SINE Alu 1 304 -7 467 203 11 90 chr3 185097778 185097955 -42426623 - HAL1b LINE L1 -438 910 748 590 136 178 0 chr3 185098161 185098279 -42426299 + AluSg/x SINE Alu 158 296 -16 2318 58 10 10 chr3 185098280 185098575 -42426003 + AluY SINE Alu 2 296 -15 2244 107 0 0 chr3 185098577 185098875 -42425703 + AluSx SINE Alu 1 298 -14 1059 171 149 9 chr3 185099296 185099518 -42425060 - AluJo SINE Alu -20 292 40 1967 137 7 7 chr3 185099555 185099854 -42424724 - AluSg SINE Alu -11 299 1 432 319 66 66 chr3 185099875 185100116 -42424462 + L2 LINE L2 2995 3235 -37 1387 132 27 18 chr3 185100470 185100689 -42423889 + AluJo SINE Alu 79 299 -13 527 307 101 17 chr3 185100816 185101054 -42423524 + MIR SINE MIR 3 260 -2 209 296 183 9 chr3 185101070 185101185 -42423393 + L2 LINE L2 3179 3313 0 1405 76 25 10 chr3 185101202 185101399 -42423179 + AluSg/x SINE Alu 102 301 -9 189 268 54 0 chr3 185102037 185102093 -42422485 - MIR SINE MIR -69 139 81 1323 126 40 43 chr3 185102352 185102551 -42422027 - MER44D DNA MER2_type -1944 547 349 2312 105 7 0 chr3 185102551 185102847 -42421731 - AluSx SINE Alu -14 298 1 1323 126 40 43 chr3 185102847 185102925 -42421653 - MER44D DNA MER2_type -2142 349 1 297 75 0 0 chr3 185103262 185103302 -42421276 + (A)n Simple_repeat Simple_repeat 1 40 0 189 179 26 0 chr3 185103794 185103833 -42420745 - MIR3 SINE MIR -5 203 164 33 43 0 0 chr3 185104621 185104668 -42419910 + AT_rich Low_complexity Low_complexity 1 47 0 2045 104 4 0 chr3 185104676 185104946 -42419632 - AluSx SINE Alu -39 273 3 27 29 0 0 chr3 185104951 185104985 -42419593 + AT_rich Low_complexity Low_complexity 1 34 0 1201 139 0 0 chr3 185105006 185105172 -42419406 - AluSg/x SINE Alu -13 297 132 2442 78 3 0 chr3 185105677 185105985 -42418593 + AluY SINE Alu 1 309 -2 468 165 37 0 chr3 185106163 185106272 -42418306 + L1M4 LINE L1 2578 2690 -3456 400 277 228 11 chr3 185106402 185106586 -42417992 - MIR SINE MIR -37 225 2 2350 92 7 0 chr3 185106929 185107233 -42417345 + AluSx SINE Alu 1 306 -6 1382 212 208 10 chr3 185107687 185108145 -42416433 - MLT1F1 LTR MaLR -8 559 1 1367 228 54 56 chr3 185108145 185108534 -42416044 + LTR40c LTR ERVL 78 465 0 629 211 96 6 chr3 185108635 185108791 -42415787 - MIR SINE MIR -30 232 63 2284 95 0 13 chr3 185108823 185108955 -42415623 + AluSx SINE Alu 5 137 -175 2391 59 7 13 chr3 185108955 185109258 -42415320 + AluSc SINE Alu 1 301 -8 2284 95 0 13 chr3 185109258 185109429 -42415149 + AluSx SINE Alu 137 304 -8 189 0 0 0 chr3 185109636 185109657 -42414921 + (TAA)n Simple_repeat Simple_repeat 2 22 0 2108 114 10 0 chr3 185109811 185110108 -42414470 - AluSx SINE Alu -11 301 2 2139 118 0 34 chr3 185110120 185110443 -42414135 - AluSq SINE Alu -1 312 1 2134 119 10 0 chr3 185111804 185112099 -42412479 + AluSg SINE Alu 1 298 -12 471 301 35 50 chr3 185113563 185113730 -42410848 - MIR SINE MIR -64 198 33 2324 62 0 62 chr3 185113730 185114038 -42410540 - AluY SINE Alu -22 289 1 471 301 35 50 chr3 185114038 185114069 -42410509 - MIR SINE MIR -229 33 3 820 246 0 17 chr3 185115138 185115317 -42409261 + MER8 DNA MER2_type 1 176 -63 383 179 15 0 chr3 185115355 185115422 -42409156 - Tigger2 DNA MER2_type -2650 68 1 2013 131 0 34 chr3 185116484 185116804 -42407774 - AluJo SINE Alu -3 309 1 2171 117 0 23 chr3 185117043 185117352 -42407226 - AluJb SINE Alu -10 302 1 658 146 85 8 chr3 185117395 185117525 -42407053 - Charlie1 DNA MER1_type 0 2761 2622 21 0 0 0 chr3 185117525 185117546 -42407032 + AT_rich Low_complexity Low_complexity 1 21 0 2211 120 0 0 chr3 185117546 185117838 -42406740 + AluSx SINE Alu 1 292 -20 361 125 0 28 chr3 185117841 185117913 -42406665 + (TA)n Simple_repeat Simple_repeat 1 70 0 280 0 0 28 chr3 185117913 185117949 -42406629 + (CA)n Simple_repeat Simple_repeat 1 35 0 1124 186 111 83 chr3 185117949 185117985 -42406593 - Charlie1 DNA MER1_type -171 2590 2556 2335 97 0 0 chr3 185117985 185118283 -42406295 + AluSx SINE Alu 1 298 -14 1124 186 111 83 chr3 185118283 185118606 -42405972 - Charlie1 DNA MER1_type -205 2556 2221 811 165 0 0 chr3 185118606 185118721 -42405857 - FLAM_A SINE Alu -20 122 8 434 194 20 31 chr3 185118778 185118876 -42405702 - MLT1B LTR MaLR 0 390 294 2288 89 3 40 chr3 185118979 185119303 -42405275 - AluSx SINE Alu 0 312 1 1539 109 0 5 chr3 185119352 185119562 -42405016 - AluSc SINE Alu -19 290 82 288 0 0 0 chr3 185119563 185119595 -42404983 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 924 99 0 4 chr3 185119595 185119797 -42404781 - AluY SINE Alu -31 280 2 328 191 71 24 chr3 185119797 185119881 -42404697 - MLT1B LTR MaLR -308 197 110 1537 198 9 9 chr3 185119913 185120236 -42404342 - Charlie1 DNA MER1_type -578 2183 1861 2467 83 0 0 chr3 185120244 185120546 -42404032 - AluY SINE Alu -9 302 1 2553 42 10 3 chr3 185120822 185121130 -42403448 - AluY SINE Alu -1 310 1 385 289 49 49 chr3 185121142 185121346 -42403232 + L1ME LINE L1 5616 5819 -302 1219 231 17 8 chr3 185122217 185122451 -42402127 - MER8 DNA MER2_type 0 239 4 308 211 53 40 chr3 185122475 185122551 -42402027 - MER2 DNA MER2_type -5 340 264 839 293 129 49 chr3 185122567 185122932 -42401646 + LTR40a LTR ERVL 123 516 -3 810 260 93 25 chr3 185124208 185124622 -42399956 - MLT1D LTR MaLR 0 505 5 233 364 0 13 chr3 185124624 185124701 -42399877 + MER91A DNA MER1_type 33 108 -88 279 295 114 0 chr3 185125209 185125314 -42399264 + MIR SINE MIR 61 177 -85 686 342 18 0 chr3 185125594 185125822 -42398756 + MLT1J2 LTR MaLR 34 265 -185 525 243 108 0 chr3 185125905 185126053 -42398525 + MER58B DNA MER1_type 177 340 -1 709 288 91 57 chr3 185127491 185127897 -42396681 + MLT1J2 LTR MaLR 16 435 -15 21 0 0 0 chr3 185128459 185128480 -42396098 + AT_rich Low_complexity Low_complexity 1 21 0 21 57 0 0 chr3 185128643 185128678 -42395900 + AT_rich Low_complexity Low_complexity 1 35 0 1774 154 3 53 chr3 185128738 185129057 -42395521 - AluSx SINE Alu -9 303 1 2129 96 7 0 chr3 185130902 185131223 -42393355 + AluSp SINE Alu 1 323 0 1626 49 10 15 chr3 185131742 185131946 -42392632 - AluY SINE Alu -108 203 1 934 201 0 48 chr3 185131946 185132165 -42392413 - AluJo SINE Alu -18 294 85 234 0 0 0 chr3 185133848 185133874 -42390704 + (TA)n Simple_repeat Simple_repeat 1 26 0 2225 97 7 10 chr3 185134223 185134522 -42390056 + AluSx SINE Alu 1 298 -14 2463 73 0 19 chr3 185135368 185135683 -42388895 - AluSp SINE Alu -4 309 1 285 182 162 0 chr3 185135949 185136048 -42388530 + AluJb SINE Alu 22 136 -166 3471 170 75 48 chr3 185136056 185136420 -42388158 + L1 LINE L1 4318 4671 -1475 219 36 0 0 chr3 185136420 185136448 -42388130 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 3471 170 75 48 chr3 185136448 185136794 -42387784 + L1 LINE L1 4671 5059 -1087 2041 100 27 30 chr3 185136794 185137094 -42387484 + AluSq SINE Alu 1 299 -14 3471 170 75 48 chr3 185137094 185137272 -42387306 + L1 LINE L1 5059 5231 -915 424 230 48 40 chr3 185137416 185137542 -42387036 + MIR SINE MIR 120 246 -16 2218 109 0 7 chr3 185137995 185138298 -42386280 - AluSx SINE Alu -11 301 1 195 69 0 0 chr3 185138327 185138356 -42386222 + (A)n Simple_repeat Simple_repeat 1 29 0 2131 105 21 0 chr3 185138644 185138930 -42385648 - AluSx SINE Alu -20 292 1 422 330 89 55 chr3 185139021 185139169 -42385409 + L2 LINE L2 2133 2274 -1040 1573 168 41 19 chr3 185139169 185139485 -42385093 + MER33 DNA MER1_type 2 324 0 422 330 89 55 chr3 185139485 185139772 -42384806 + L2 LINE L2 2274 2583 -731 280 310 14 0 chr3 185139952 185140023 -42384555 - MIR SINE MIR -143 119 48 2085 123 7 0 chr3 185140607 185140899 -42383679 + AluSq SINE Alu 1 294 -19 2181 113 0 13 chr3 185141138 185141448 -42383130 + AluSq SINE Alu 1 306 -7 281 98 0 59 chr3 185141592 185141643 -42382935 + Alu SINE Alu 251 298 -4 405 0 0 0 chr3 185141672 185141717 -42382861 + (TG)n Simple_repeat Simple_repeat 2 46 0 608 208 0 0 chr3 185142693 185142789 -42381789 - AluS SINE Alu -214 98 3 347 174 208 45 chr3 185143511 185143689 -42380889 - L2 LINE L2 0 3313 3107 720 135 0 10 chr3 185143691 185143795 -42380783 + AluSq/x SINE Alu 4 106 -206 224 321 98 10 chr3 185144020 185144255 -42380323 + L2 LINE L2 2551 2850 -464 277 314 61 98 chr3 185144304 185144600 -42379978 + L2 LINE L2 2988 3272 0 1446 117 5 0 chr3 185144605 185144801 -42379777 - MER107 DNA MER1_type 0 197 1 2145 98 11 0 chr3 185145279 185145564 -42379014 + AluSp SINE Alu 1 288 -25 195 69 0 0 chr3 185145570 185145599 -42378979 + (TAAAA)n Simple_repeat Simple_repeat 3 31 0 747 226 7 7 chr3 185145848 185145985 -42378593 + AluJb SINE Alu 133 269 -43 357 24 0 0 chr3 185146534 185146576 -42378002 + (CA)n Simple_repeat Simple_repeat 2 43 0 309 183 108 54 chr3 185146981 185147074 -42377504 + L1ME LINE L1 5672 5769 -393 390 117 0 0 chr3 185147099 185147159 -42377419 - Alu SINE Alu -2 300 241 963 68 0 0 chr3 185147159 185147276 -42377302 - AluSg1 SINE Alu -192 117 1 835 156 0 15 chr3 185147444 185147579 -42376999 + AluSg/x SINE Alu 132 264 -46 540 155 0 0 chr3 185147708 185147792 -42376786 + FRAM SINE Alu 69 152 -24 781 196 0 0 chr3 185147803 185147936 -42376642 + AluJo SINE Alu 1 133 -169 1738 98 152 11 chr3 185147939 185148203 -42376375 + AluSx SINE Alu 1 301 -1 1007 179 25 0 chr3 185148206 185148368 -42376210 + AluJo SINE Alu 137 302 0 1471 93 44 0 chr3 185148372 185148597 -42375981 + L1MA1 LINE L1 6068 6302 0 1180 196 61 32 chr3 185148620 185148828 -42375750 - L1ME LINE L1 -589 5577 5356 344 22 22 0 chr3 185148828 185148873 -42375705 + (TG)n Simple_repeat Simple_repeat 2 47 0 1180 196 61 32 chr3 185148873 185148975 -42375603 - L1ME LINE L1 -810 5356 5258 189 221 253 42 chr3 185149132 185149227 -42375351 + L2 LINE L2 3157 3271 -1 22 0 0 0 chr3 185151025 185151047 -42373531 + AT_rich Low_complexity Low_complexity 1 22 0 1890 139 18 0 chr3 185151625 185151906 -42372672 - AluJo SINE Alu -16 296 11 1838 152 104 45 chr3 185151992 185152366 -42372212 + MSTD LTR MaLR 1 396 0 1877 159 48 11 chr3 185152499 185152852 -42371726 - L1MB7 LINE L1 -5 6179 5814 975 153 0 0 chr3 185152999 185153130 -42371448 + FLAM_C SINE Alu 1 131 -2 2073 128 10 3 chr3 185153374 185153678 -42370900 - AluSx SINE Alu -6 306 1 1286 161 0 15 chr3 185154477 185154682 -42369896 - AluSx SINE Alu -100 212 11 1100 179 18 54 chr3 185154925 185155148 -42369430 - AluJb SINE Alu -4 308 94 1754 175 0 11 chr3 185155245 185155531 -42369047 + AluJb SINE Alu 1 283 -29 872 152 0 15 chr3 185155577 185155709 -42368869 + FRAM SINE Alu 29 158 -18 1712 149 17 7 chr3 185155991 185156279 -42368299 - AluSc SINE Alu -14 295 5 189 307 148 0 chr3 185156461 185156562 -42368016 - L3b LINE CR1 -366 1217 1102 1858 127 0 0 chr3 185156632 185156885 -42367693 - AluSq SINE Alu -60 253 1 2861 13 0 0 chr3 185156896 185157206 -42367372 - AluYb8 SINE Alu -8 310 1 228 111 0 0 chr3 185158198 185158234 -42366344 + (CCG)n Simple_repeat Simple_repeat 2 37 0 773 93 8 8 chr3 185159730 185159848 -42364730 + AluSg/x SINE Alu 190 307 -2 2318 98 3 3 chr3 185159862 185160167 -42364411 + AluSp SINE Alu 1 305 -8 233 284 81 0 chr3 185161620 185161694 -42362884 + L2 LINE L2 2893 2972 -342 379 241 96 96 chr3 185161751 185161938 -42362640 + L2 LINE L2 3092 3278 -35 376 181 173 8 chr3 185162628 185162761 -42361817 - L1ME4a LINE L1 -5 6116 5962 1540 128 20 8 chr3 185162877 185163127 -42361451 - AluSx SINE Alu -17 295 43 2195 106 7 7 chr3 185163978 185164281 -42360297 - AluSp SINE Alu -9 304 2 813 145 7 43 chr3 185165218 185165356 -42359222 - FLAM_C SINE Alu -10 133 1 225 0 0 0 chr3 185165766 185165791 -42358787 + (T)n Simple_repeat Simple_repeat 1 25 0 35 63 0 0 chr3 185167611 185167674 -42356904 + AT_rich Low_complexity Low_complexity 1 63 0 1946 151 3 0 chr3 185167920 185168218 -42356360 - AluJo SINE Alu -13 299 1 6090 36 3 1 chr3 185168442 185169183 -42355395 - L1P LINE L1 -1627 4519 3778 316 248 99 0 chr3 185169216 185169317 -42355261 - L1ME LINE L1 -436 5685 5575 742 153 196 18 chr3 185170036 185170199 -42354379 - MER3 DNA MER1_type -1 208 17 4265 124 36 62 chr3 185170541 185171398 -42353180 - L1MA5 LINE L1 -2 6298 5464 334 313 80 17 chr3 185171547 185171723 -42352855 - MIR3 SINE MIR -21 187 1 27 0 0 0 chr3 185173080 185173107 -42351471 + AT_rich Low_complexity Low_complexity 1 27 0 308 203 62 0 chr3 185173226 185173290 -42351288 + MER20 DNA MER1_type 18 85 -134 373 148 4 0 chr3 185173404 185173479 -42351099 - Alu SINE Alu -248 53 2 1335 157 58 74 chr3 185173502 185173814 -42350764 - AluJo SINE Alu -5 307 1 711 93 0 0 chr3 185174008 185174105 -42350473 - AluSg/x SINE Alu -18 291 195 2194 109 0 3 chr3 185174119 185174412 -42350166 - AluSg SINE Alu -18 292 1 252 254 97 9 chr3 185174424 185174538 -42350040 - L1ME4a LINE L1 -303 5818 5695 2180 102 6 32 chr3 185174614 185174928 -42349650 - AluSx SINE Alu -6 306 1 30 45 0 0 chr3 185175783 185175827 -42348751 + AT_rich Low_complexity Low_complexity 1 44 0 595 338 39 4 chr3 185175832 185176063 -42348515 - MIR SINE MIR -12 250 12 25 51 0 0 chr3 185176640 185176679 -42347899 + AT_rich Low_complexity Low_complexity 1 39 0 27 49 0 0 chr3 185176719 185176760 -42347818 + AT_rich Low_complexity Low_complexity 1 41 0 798 244 84 0 chr3 185176842 185177104 -42347474 + L1ME2 LINE L1 5587 5870 -294 552 233 0 39 chr3 185177137 185177266 -42347312 - MER63 DNA MER1_type -311 751 2 864 227 31 36 chr3 185177323 185177548 -42347030 - MER58A DNA MER1_type 0 224 1 366 371 17 17 chr3 185177599 185177777 -42346801 + MER5B DNA MER1_type 1 178 0 441 240 110 71 chr3 185178434 185178624 -42345954 - L1ME3 LINE L1 -20 6144 5922 1560 184 7 28 chr3 185178624 185178912 -42345666 - AluJo SINE Alu -30 282 1 441 240 110 71 chr3 185178912 185179029 -42345549 - L1ME3 LINE L1 -242 5922 5811 4051 251 136 8 chr3 185179031 185180556 -42344022 - L1MB1 LINE L1 -2 6560 4820 1939 242 72 36 chr3 185180572 185181628 -42342950 - L1MB1 LINE L1 -3828 2712 1648 1846 249 31 18 chr3 185181627 185182178 -42342400 + L1 LINE L1 2389 2946 -3200 * 1030 215 75 49 chr3 185182183 185182244 -42342334 - L1M3d LINE L1 -4516 1375 1317 2130 130 32 16 chr3 185182244 185182613 -42341965 + THE1C LTR MaLR 1 375 0 1030 215 75 49 chr3 185182613 185182900 -42341678 - L1M3d LINE L1 -4574 1317 1018 5296 208 29 14 chr3 185183004 185184497 -42340081 - L1P4 LINE L1 -677 5489 3984 846 305 113 67 chr3 185184509 185185697 -42338881 - L1M4 LINE L1 -801 5345 4104 230 177 51 25 chr3 185185902 185185981 -42338597 + A-rich Low_complexity Low_complexity 2 82 0 22 80 0 0 chr3 185186021 185186071 -42338507 + AT_rich Low_complexity Low_complexity 1 50 0 623 315 80 4 chr3 185186088 185186326 -42338252 - MIR SINE MIR -6 256 1 41 66 0 0 chr3 185186361 185186437 -42338141 + AT_rich Low_complexity Low_complexity 1 76 0 13399 149 19 45 chr3 185187569 185190052 -42334526 - Tigger1 DNA MER2_type 0 2418 1 501 294 135 40 chr3 185190690 185190986 -42333592 - L2 LINE L2 -5 3308 2985 240 100 0 0 chr3 185190995 185191035 -42333543 + (TG)n Simple_repeat Simple_repeat 1 40 0 345 227 76 34 chr3 185191199 185191318 -42333260 - L2 LINE L2 -658 2656 2533 23 78 0 0 chr3 185191768 185191819 -42332759 + AT_rich Low_complexity Low_complexity 1 51 0 24 0 0 0 chr3 185193050 185193074 -42331504 + AT_rich Low_complexity Low_complexity 1 24 0 191 229 0 0 chr3 185193075 185193110 -42331468 - MIR SINE MIR -11 251 217 928 214 40 0 chr3 185194865 185195066 -42329512 + MER6B DNA MER2_type 2 210 0 493 127 82 0 chr3 185195308 185195418 -42329160 - AluSq/x SINE Alu -188 124 6 1741 95 8 4 chr3 185196478 185196721 -42327857 - AluSc SINE Alu -7 302 59 855 109 29 22 chr3 185196767 185196940 -42327638 + AluSc SINE Alu 144 317 0 260 358 73 8 chr3 185196980 185197103 -42327475 + L2 LINE L2 3141 3271 -1 2274 114 0 0 chr3 185197367 185197665 -42326913 + AluSx SINE Alu 1 298 -14 555 231 147 18 chr3 185197979 185198204 -42326374 + L1ME4a LINE L1 5579 5832 -289 394 284 83 52 chr3 185198211 185198440 -42326138 - MIR SINE MIR -16 246 11 1953 183 27 58 chr3 185199052 185199085 -42325493 - L1MC4 LINE L1 -5 8037 8005 1446 149 104 38 chr3 185199085 185199374 -42325204 + AluJo SINE Alu 1 308 -4 1953 183 27 58 chr3 185199374 185199842 -42324736 - L1MC4 LINE L1 -37 8005 7552 1837 138 7 10 chr3 185199842 185200140 -42324438 - AluY SINE Alu -14 297 1 1953 183 27 58 chr3 185200140 185200194 -42324384 - L1MC4 LINE L1 -490 7552 7498 619 218 0 24 chr3 185200328 185200452 -42324126 - FLAM_A SINE Alu -12 121 1 2403 78 9 40 chr3 185200452 185200799 -42323779 - THE1C LTR MaLR -39 336 1 212 232 18 0 chr3 185201238 185201294 -42323284 + L2 LINE L2 3257 3313 0 2203 121 3 0 chr3 185201382 185201688 -42322890 + AluSx SINE Alu 1 307 -5 229 183 33 0 chr3 185202022 185202082 -42322496 + AluS SINE Alu 1 62 -239 1945 96 4 11 chr3 185202354 185202624 -42321954 - AluSq SINE Alu -9 304 37 187 345 35 44 chr3 185202708 185202821 -42321757 + L2 LINE L2 2970 3081 -191 2565 219 41 29 chr3 185202848 185202896 -42321682 + L1M2 LINE L1 2300 2346 -4502 1716 181 7 7 chr3 185202896 185203195 -42321383 + AluJo SINE Alu 4 302 -10 2565 219 41 29 chr3 185203195 185203931 -42320647 + L1M2 LINE L1 2346 3107 -3741 1335 198 41 63 chr3 185203931 185204250 -42320328 + AluJb SINE Alu 1 312 0 2565 219 41 29 chr3 185204250 185204611 -42319967 + L1M2 LINE L1 3107 3462 -3386 894 236 69 37 chr3 185204738 185204945 -42319633 - MIR SINE MIR -7 255 37 1925 155 10 0 chr3 185204945 185205241 -42319337 + AluSx SINE Alu 14 312 0 894 236 69 37 chr3 185205241 185205279 -42319299 - MIR SINE MIR -225 37 2 738 197 0 0 chr3 185205388 185205515 -42319063 - FLAM_A SINE Alu -6 127 1 2084 70 3 92 chr3 185205694 185206010 -42318568 + AluY SINE Alu 1 288 -23 724 99 0 0 chr3 185206012 185206113 -42318465 - AluS SINE Alu -211 101 1 598 279 137 2 chr3 185206229 185206517 -42318061 + L2 LINE L2 2777 3113 -200 195 42 0 0 chr3 185206519 185206543 -42318035 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1886 99 23 0 chr3 185206544 185206807 -42317771 - AluSx SINE Alu -43 269 1 748 136 0 0 chr3 185206811 185206929 -42317649 - FLAM_C SINE Alu -9 134 17 745 96 0 0 chr3 185207236 185207340 -42317238 - AluSq/x SINE Alu -208 104 1 3167 109 4 45 chr3 185207340 185207855 -42316723 + Tigger4(Zombi) DNA MER2_type 2238 2731 0 2119 83 22 0 chr3 185208470 185208773 -42315805 - AluSp SINE Alu 0 309 1 197 267 297 0 chr3 185208901 185209002 -42315576 + MIR SINE MIR 76 206 -56 1834 127 3 85 chr3 185209518 185209716 -42314862 - AluSc SINE Alu -5 304 142 2324 64 4 0 chr3 185209716 185209997 -42314581 - AluY SINE Alu -29 282 1 1834 127 3 85 chr3 185209997 185210129 -42314449 - AluSc SINE Alu -167 142 1 2426 91 7 0 chr3 185210130 185210438 -42314140 - AluSx SINE Alu -2 310 1 503 228 79 140 chr3 185210712 185210940 -42313638 + MIR SINE MIR 5 218 -44 284 269 0 0 chr3 185211942 185212009 -42312569 + MIR SINE MIR 122 188 -74 36 23 0 0 chr3 185212050 185212093 -42312485 + AT_rich Low_complexity Low_complexity 1 43 0 694 148 0 0 chr3 185212099 185212221 -42312357 - MER2 DNA MER2_type -139 206 85 1614 163 0 80 chr3 185212272 185212425 -42312153 - AluJo SINE Alu -24 288 171 2329 101 3 0 chr3 185212425 185212721 -42311857 - AluSp SINE Alu -16 297 1 1614 163 0 80 chr3 185212721 185212880 -42311698 - AluJo SINE Alu -141 171 1 261 204 173 55 chr3 185213091 185213247 -42311331 - L1M4 LINE L1 -2928 3218 3082 2001 153 0 3 chr3 185213247 185213535 -42311043 - AluSx SINE Alu -25 287 1 261 204 173 55 chr3 185213535 185213602 -42310976 - L1M4 LINE L1 -3064 3082 3024 2181 128 0 13 chr3 185213602 185213914 -42310664 - AluSx SINE Alu -4 308 1 261 204 173 55 chr3 185213914 185213978 -42310600 - L1M4 LINE L1 -3122 3024 2896 2032 165 62 23 chr3 185214242 185215116 -42309462 + L1M4 LINE L1 4869 5772 -406 1364 185 65 52 chr3 185215245 185215721 -42308857 + L1MC5 LINE L1 7161 7642 -319 1467 136 14 0 chr3 185215796 185216017 -42308561 - AluSc SINE Alu -21 288 65 1254 99 0 0 chr3 185216051 185216212 -42308366 + AluSq SINE Alu 1 161 -152 478 81 95 14 chr3 185216212 185216286 -42308292 + AluSg/x SINE Alu 212 291 -21 468 245 69 5 chr3 185216291 185216495 -42308083 + L1MC5 LINE L1 7695 7911 -50 1706 168 32 23 chr3 185216515 185216824 -42307754 - AluSx SINE Alu 0 312 1 822 140 45 0 chr3 185216826 185216983 -42307595 + Charlie1a DNA MER1_type 74 237 -1218 10117 119 40 2 chr3 185217105 185218663 -42305915 - MER52-int LTR ERV1 -60 7031 5414 688 53 21 0 chr3 185218653 185218747 -42305831 - MER52-int LTR ERV1 -6421 670 575 * 968 229 162 31 chr3 185218847 185219261 -42305317 + HAL1 LINE L1 1553 2020 -487 1848 120 65 0 chr3 185219267 185219542 -42305036 + AluSq SINE Alu 6 298 -15 781 212 54 29 chr3 185219707 185219948 -42304630 + MER112 DNA MER1_type 8 254 -6 23 68 0 0 chr3 185220362 185220406 -42304172 + AT_rich Low_complexity Low_complexity 1 44 0 1767 201 3 0 chr3 185220407 185220710 -42303868 + AluJo SINE Alu 1 304 -8 218 394 67 18 chr3 185222996 185223161 -42301417 + L2 LINE L2 3096 3268 -4 403 323 46 49 chr3 185223185 185223448 -42301130 - L1M4 LINE L1 -1213 4821 4560 2354 68 3 16 chr3 185223461 185223770 -42300808 - AluY SINE Alu -6 305 1 2109 201 44 5 chr3 185223938 185224350 -42300228 + MSTA LTR MaLR 1 428 0 2674 197 31 2 chr3 185224350 185224930 -42299648 + MSTA-int LTR MaLR 1 597 -1054 11097 45 1 3 chr3 185225030 185227263 -42297315 + L1PA3 LINE L1 3906 6134 -21 21 0 0 0 chr3 185227399 185227420 -42297158 + AT_rich Low_complexity Low_complexity 1 21 0 2425 75 3 3 chr3 185228483 185228790 -42295788 + AluSp SINE Alu 1 307 -6 1609 189 0 4 chr3 185228790 185229065 -42295513 - AluJb SINE Alu -38 274 1 759 194 33 61 chr3 185229419 185229599 -42294979 - AluJo SINE Alu -137 175 1 483 76 152 13 chr3 185229625 185229704 -42294874 + AluSg1 SINE Alu 1 90 -219 2693 158 48 2 chr3 185229806 185230269 -42294309 - MER52A-int LTR ERV1 -6607 484 1 2377 197 30 6 chr3 185230270 185230737 -42293841 - MER52A LTR ERV1 0 1755 1278 229 156 22 0 chr3 185230748 185230793 -42293785 - MER52A LTR ERV1 -637 1118 1073 409 284 0 0 chr3 185230799 185230894 -42293684 - MER52A LTR ERV1 -1660 95 1 351 128 47 23 chr3 185230894 185230980 -42293598 - L1M LINE L1 -952 5348 5261 2902 178 177 163 chr3 185230987 185232249 -42292329 - MER52A LTR ERV1 -476 1279 1 2090 223 40 7 chr3 185232249 185232842 -42291736 - L1 LINE L1 -798 5348 4736 * 4304 242 100 41 chr3 185232837 185234029 -42290549 - L1M4 LINE L1 -1645 4389 3082 1825 149 14 4 chr3 185234029 185234305 -42290273 + AluSx SINE Alu 4 282 -30 4304 242 100 41 chr3 185234305 185234672 -42289906 - L1M4 LINE L1 -2952 3082 2738 508 371 37 32 chr3 185235842 185236252 -42288326 - L1M4 LINE L1 -5533 422 11 21 82 0 0 chr3 185236288 185236337 -42288241 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr3 185236655 185236684 -42287894 + AT_rich Low_complexity Low_complexity 1 29 0 258 300 33 0 chr3 185237595 185237655 -42286923 + MIR SINE MIR 49 110 -152 22 0 0 0 chr3 185238565 185238587 -42285991 + AT_rich Low_complexity Low_complexity 1 22 0 1828 140 70 20 chr3 185240291 185240648 -42283930 + THE1C LTR MaLR 1 375 0 21 82 0 0 chr3 185241089 185241138 -42283440 + AT_rich Low_complexity Low_complexity 1 49 0 339 92 355 0 chr3 185241160 185241236 -42283342 - MLT1A2 LTR MaLR -271 103 1 576 266 62 0 chr3 185241582 185241759 -42282819 - MER5A DNA MER1_type -1 188 1 303 243 139 56 chr3 185242540 185242684 -42281894 - MIR SINE MIR -46 216 61 763 256 60 103 chr3 185243060 185243506 -42281072 + LTR40c LTR ERVL 2 428 -37 217 309 100 45 chr3 185244000 185244110 -42280468 + L2 LINE L2 3156 3271 -1 532 256 83 0 chr3 185244146 185244279 -42280299 + MIR SINE MIR 32 175 -87 214 384 8 32 chr3 185245702 185245827 -42278751 - MIR3 SINE MIR -21 187 66 318 338 83 8 chr3 185246671 185246804 -42277774 + L2 LINE L2 3104 3246 -26 292 371 9 9 chr3 185247750 185247855 -42276723 + MIR SINE MIR 19 123 -85 270 333 108 22 chr3 185248141 185248372 -42276206 + L2 LINE L2 2804 3054 -218 300 27 0 0 chr3 185248434 185248471 -42276107 + (TG)n Simple_repeat Simple_repeat 2 38 0 1571 258 25 100 chr3 185250836 185251725 -42272853 - L2 LINE L2 -23 3290 2474 37 0 0 0 chr3 185251895 185251932 -42272646 + AT_rich Low_complexity Low_complexity 1 37 0 270 0 0 0 chr3 185251932 185251962 -42272616 + (CA)n Simple_repeat Simple_repeat 2 31 0 25 0 0 0 chr3 185252002 185252027 -42272551 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr3 185252047 185252072 -42272506 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3 185252351 185252374 -42272204 + AT_rich Low_complexity Low_complexity 1 23 0 180 152 0 0 chr3 185252419 185252452 -42272126 + (TG)n Simple_repeat Simple_repeat 2 34 0 1251 235 7 4 chr3 185253147 185253424 -42271154 + MER76 LTR ERV 2 279 -409 494 208 173 12 chr3 185253452 185253620 -42270958 + MER76 LTR ERV 343 537 -151 281 276 110 28 chr3 185253650 185253795 -42270783 + MER5A DNA MER1_type 33 189 0 853 123 34 0 chr3 185254219 185254365 -42270213 - THE1C LTR MaLR -33 342 192 1672 128 43 36 chr3 185254470 185254774 -42269804 - MER4B LTR ERV1 -302 308 3 747 87 0 0 chr3 185254875 185254979 -42269599 + (GAAA)n Simple_repeat Simple_repeat 4 107 0 249 33 0 0 chr3 185255983 185256013 -42268565 + (A)n Simple_repeat Simple_repeat 1 30 0 24 53 0 0 chr3 185256631 185256669 -42267909 + AT_rich Low_complexity Low_complexity 1 38 0 477 243 9 0 chr3 185256669 185256780 -42267798 + MER81 DNA DNA 1 112 -2 225 0 0 0 chr3 185256823 185256848 -42267730 + (CA)n Simple_repeat Simple_repeat 2 26 0 180 167 0 0 chr3 185256849 185256897 -42267681 + GA-rich Low_complexity Low_complexity 2 49 0 504 314 94 19 chr3 185256897 185257206 -42267372 + MLT1J LTR MaLR 7 338 -173 8367 81 2 40 chr3 185257860 185259152 -42265426 - Harlequin LTR ERV1 -5653 1243 1 1645 198 75 34 chr3 185259152 185259591 -42264987 - LTR2B LTR ERV1 0 490 34 183 323 15 0 chr3 185259847 185259912 -42264666 + MIR SINE MIR 197 262 0 16369 57 9 4 chr3 185260088 185261677 -42262901 - Harlequin LTR ERV1 -2305 4591 2988 2306 92 13 0 chr3 185261677 185261981 -42262597 + AluY SINE Alu 1 308 -3 16369 57 9 4 chr3 185261981 185262455 -42262123 - Harlequin LTR ERV1 -3908 2988 2518 17242 67 3 7 chr3 185262555 185264796 -42259782 + Harlequin LTR ERV1 4664 6896 0 1669 154 169 37 chr3 185264818 185265003 -42259575 + LTR2B LTR ERV1 35 194 -296 186 43 0 0 chr3 185265003 185265026 -42259552 + (TTCTG)n Simple_repeat Simple_repeat 1 23 0 1669 154 169 37 chr3 185265026 185265243 -42259335 + LTR2B LTR ERV1 194 490 0 363 44 0 0 chr3 185265280 185265325 -42259253 + (GGAA)n Simple_repeat Simple_repeat 4 48 0 1334 204 0 27 chr3 185267867 185268161 -42256417 + AluJo SINE Alu 15 300 -12 416 235 10 10 chr3 185269914 185270016 -42254562 - MER5A DNA MER1_type -84 105 4 873 211 22 11 chr3 185270319 185270499 -42254079 - MER58A DNA MER1_type -40 184 3 241 305 84 53 chr3 185270703 185270834 -42253744 - MIR SINE MIR -115 147 13 31 44 0 0 chr3 185272274 185272319 -42252259 + AT_rich Low_complexity Low_complexity 1 45 0 428 239 55 18 chr3 185272864 185272973 -42251605 - MIR3 SINE MIR -20 188 76 228 257 0 0 chr3 185273488 185273558 -42251020 + (TA)n Simple_repeat Simple_repeat 1 70 0 228 224 0 0 chr3 185273860 185273927 -42250651 + CT-rich Low_complexity Low_complexity 2 68 0 847 300 20 16 chr3 185273964 185274217 -42250361 - MIR SINE MIR -2 260 7 21 0 0 0 chr3 185274621 185274642 -42249936 + AT_rich Low_complexity Low_complexity 1 21 0 2061 159 32 8 chr3 185275871 185276242 -42248336 - L1MB2 LINE L1 -8 6163 5784 240 35 0 0 chr3 185276864 185276893 -42247685 + (A)n Simple_repeat Simple_repeat 1 29 0 2084 213 51 30 chr3 185278101 185278628 -42245950 + MER74A LTR ERVL 8 545 -13 190 427 54 4 chr3 185279207 185279446 -42245132 - L2 LINE L2 -470 2844 2594 259 218 58 13 chr3 185280627 185280783 -42243795 + (TA)n Simple_repeat Simple_repeat 1 163 0 22 35 0 0 chr3 185281329 185281358 -42243220 + AT_rich Low_complexity Low_complexity 1 29 0 2271 97 0 7 chr3 185281450 185281749 -42242829 + AluSg SINE Alu 1 297 -13 743 253 102 62 chr3 185281844 185282346 -42242232 - L1MC4a LINE L1 -1543 6265 5744 1249 162 5 0 chr3 185282711 185282915 -42241663 - L1P LINE L1 -2236 3910 3706 4730 220 72 33 chr3 185282934 185284215 -42240363 - L1P LINE L1 -2947 3199 1869 1044 79 0 0 chr3 185284216 185284343 -42240235 - AluY SINE Alu -184 127 1 2812 255 38 33 chr3 185284344 185285432 -42239146 + L1ME1 LINE L1 5055 6148 -18 1560 152 46 0 chr3 185286441 185286724 -42237854 + L1MA3 LINE L1 6010 6305 0 22 0 0 0 chr3 185286787 185286809 -42237769 + AT_rich Low_complexity Low_complexity 1 22 0 746 300 138 30 chr3 185287164 185287700 -42236878 + MLT1G1 LTR MaLR 1 594 -1 392 161 0 11 chr3 185288479 185288566 -42236012 + GA-rich Low_complexity Low_complexity 4 89 0 2151 114 0 3 chr3 185288974 185289273 -42235305 - AluSg SINE Alu -12 298 1 264 263 0 0 chr3 185289763 185289820 -42234758 + L2 LINE L2 2213 2269 -1045 1321 163 128 38 chr3 185289832 185290176 -42234402 + THE1C LTR MaLR 1 375 0 9462 127 10 50 chr3 185290179 185291822 -42232756 + THE1C-int LTR MaLR 4 1580 0 1646 152 65 46 chr3 185291822 185292190 -42232388 + THE1C LTR MaLR 1 375 0 216 400 96 15 chr3 185292883 185293018 -42231560 + L2 LINE L2 3127 3272 0 273 359 117 39 chr3 185293861 185294117 -42230461 + L2 LINE L2 2981 3256 -16 339 248 113 14 chr3 185294320 185294461 -42230117 + L1ME LINE L1 5513 5667 -454 1214 212 14 35 chr3 185294534 185294822 -42229756 + AluJb SINE Alu 31 312 0 639 255 14 56 chr3 185294898 185295114 -42229464 + MIR SINE MIR 41 247 -15 2046 151 0 7 chr3 185295851 185296155 -42228423 - AluSx SINE Alu -10 302 1 414 185 22 11 chr3 185297368 185297460 -42227118 + MER4E LTR ERV1 687 779 0 1873 94 0 99 chr3 185297492 185297834 -42226744 - AluSc SINE Alu -1 308 1 632 262 21 37 chr3 185298036 185298227 -42226351 - L1ME1 LINE L1 -24 6142 5955 694 223 8 119 chr3 185298840 185299255 -42225323 - L1MD2 LINE L1 -437 5922 5582 252 86 0 0 chr3 185300304 185300339 -42224239 + (TG)n Simple_repeat Simple_repeat 2 36 0 1481 198 6 28 chr3 185300657 185300975 -42223603 + AluJo SINE Alu 1 311 -1 214 380 18 18 chr3 185303130 185303243 -42221335 - L2 LINE L2 -43 3229 3117 2844 218 83 12 chr3 185303481 185304203 -42220375 + MER63C DNA MER1_type 43 829 -231 2050 127 0 10 chr3 185304203 185304511 -42220067 - AluSc SINE Alu -3 306 2 2844 218 83 12 chr3 185304511 185304591 -42219987 + MER63C DNA MER1_type 829 902 -28 265 279 0 0 chr3 185306218 185306279 -42218299 + GA-rich Low_complexity Low_complexity 4 64 0 247 113 38 0 chr3 185306612 185306665 -42217913 + (TCTA)n Simple_repeat Simple_repeat 3 57 0 613 265 140 10 chr3 185306988 185307188 -42217390 - MIR SINE MIR -6 256 31 31 0 0 0 chr3 185307816 185307847 -42216731 + AT_rich Low_complexity Low_complexity 1 31 0 646 93 0 21 chr3 185307978 185308075 -42216503 - L1PA5 LINE L1 0 6154 6060 1264 123 44 5 chr3 185308083 185308286 -42216292 + L1PA15 LINE L1 5948 6158 -7 26 0 0 0 chr3 185308367 185308393 -42216185 + AT_rich Low_complexity Low_complexity 1 26 0 664 345 82 23 chr3 185310387 185310825 -42213753 + MLT1J LTR MaLR 16 479 -32 190 274 153 32 chr3 185311127 185311317 -42213261 + L2 LINE L2 2358 2570 -744 6704 138 21 18 chr3 185311859 185312511 -42212067 - L1MA1 LINE L1 0 7721 7073 189 0 0 0 chr3 185312511 185312532 -42212046 + (TG)n Simple_repeat Simple_repeat 2 22 0 6704 138 21 18 chr3 185312532 185313550 -42211028 - L1MA1 LINE L1 -648 7073 6042 269 241 44 36 chr3 185313825 185313962 -42210616 - L1ME LINE L1 -319 5802 5665 5604 68 1 0 chr3 185313978 185314694 -42209884 - L1PA8 LINE L1 -8 6164 5448 385 171 53 0 chr3 185314694 185314770 -42209808 + L1M1 LINE L1 1358 1437 -6128 3608 187 40 34 chr3 185314772 185316188 -42208390 - L1MA1 LINE L1 -3051 4514 3089 6469 222 30 18 chr3 185316222 185317635 -42206943 - L1MA1 LINE L1 -6118 1447 17 346 182 0 23 chr3 185317902 185317990 -42206588 + CT-rich Low_complexity Low_complexity 3 88 0 354 330 75 29 chr3 185319711 185319950 -42204628 - HERVL LTR ERVL -1124 4530 4281 229 320 0 29 chr3 185321842 185321945 -42202633 - MLT1J LTR MaLR -139 372 273 295 183 50 0 chr3 185322460 185322520 -42202058 - MIR SINE MIR -44 218 156 1122 156 6 0 chr3 185322520 185322700 -42201878 + MER46B DNA MER2_type 1 56 -180 316 158 70 0 chr3 185322700 185322757 -42201821 + AluSc SINE Alu 144 204 -95 382 284 168 11 chr3 185322777 185322967 -42201611 + MLT1E3 LTR MaLR 301 520 -104 4169 143 41 27 chr3 185323501 185323897 -42200681 + L1PB4 LINE L1 5365 5754 -402 453 19 0 0 chr3 185323897 185323951 -42200627 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 4169 143 41 27 chr3 185323951 185324087 -42200491 + L1PB4 LINE L1 5754 5887 -269 1550 201 0 34 chr3 185324087 185324410 -42200168 + AluJo SINE Alu 1 312 0 4169 143 41 27 chr3 185324410 185324657 -42199921 + L1PB4 LINE L1 5887 6156 0 887 211 65 0 chr3 185324865 185325064 -42199514 + MER34C LTR ERV1 1 212 -373 5397 165 9 7 chr3 185325123 185326480 -42198098 - L1PA16 LINE L1 0 6166 4808 241 224 105 0 chr3 185326485 185326561 -42198017 + LTR48 LTR ERV1 403 486 -301 * 405 217 84 25 chr3 185326559 185326771 -42197807 + LTR48 LTR ERV1 325 737 0 3102 130 58 9 chr3 185326805 185327342 -42197236 - MER34B LTR ERV1 -1 564 2 28 71 0 0 chr3 185329060 185329116 -42195462 + AT_rich Low_complexity Low_complexity 1 56 0 36 0 0 0 chr3 185329218 185329254 -42195324 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr3 185329561 185329583 -42194995 + AT_rich Low_complexity Low_complexity 1 22 0 2162 97 3 0 chr3 185330369 185330657 -42193921 - AluSx SINE Alu -23 289 1 242 317 61 24 chr3 185331368 185331450 -42193128 - L2 LINE L2 -49 3223 3139 753 326 113 27 chr3 185331750 185332274 -42192304 - L1MCc LINE L1 -5829 594 26 237 404 88 15 chr3 185332280 185332552 -42192026 - L2 LINE L2 -605 2709 2418 1653 220 24 65 chr3 185332991 185333455 -42191123 - MER31B LTR ERV1 -19 447 3 21 57 0 0 chr3 185334583 185334618 -42189960 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr3 185335033 185335068 -42189510 + AT_rich Low_complexity Low_complexity 1 35 0 41 21 0 0 chr3 185336108 185336156 -42188422 + AT_rich Low_complexity Low_complexity 1 48 0 2343 206 58 17 chr3 185336392 185336930 -42187648 - MER68 LTR ERV1 -2 560 1 264 252 244 56 chr3 185336950 185337220 -42187358 - L1ME LINE L1 -238 5883 5563 22 56 0 0 chr3 185337900 185337936 -42186642 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr3 185339161 185339193 -42185385 + AT_rich Low_complexity Low_complexity 1 32 0 1795 164 124 22 chr3 185339637 185340087 -42184491 - LTR54B LTR ERV1 -2 496 1 297 0 0 0 chr3 185340230 185340263 -42184315 + (CA)n Simple_repeat Simple_repeat 1 33 0 692 278 8 29 chr3 185340441 185340682 -42183896 - L1ME2 LINE L1 -3 6161 5926 207 0 0 0 chr3 185340756 185340779 -42183799 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 218 256 105 23 chr3 185342922 185343008 -42181570 + MER91B DNA MER1_type 32 124 -66 2982 123 38 6 chr3 185343065 185343189 -42181389 - L1MA2 LINE L1 0 6304 6185 297 0 0 0 chr3 185343189 185343222 -42181356 + (TG)n Simple_repeat Simple_repeat 2 34 0 2982 123 38 6 chr3 185343222 185343601 -42180977 - L1MA2 LINE L1 -119 6185 5785 1307 222 43 0 chr3 185343647 185343753 -42180825 + AluJb SINE Alu 12 112 -200 447 19 0 0 chr3 185343753 185343805 -42180773 + (TAA)n Simple_repeat Simple_repeat 3 54 0 1307 222 43 0 chr3 185343805 185343977 -42180601 + AluJb SINE Alu 112 302 -10 1542 231 15 6 chr3 185344012 185344341 -42180237 - MLT1A1 LTR MaLR -33 332 1 1938 222 54 27 chr3 185344341 185344353 -42180225 - MLT1A1-int LTR MaLR 0 1724 1714 1127 198 109 133 chr3 185344353 185345095 -42179483 - LTR8A LTR ERV1 -3 724 1 1938 222 54 27 chr3 185345095 185345576 -42179002 - MLT1A1-int LTR MaLR -10 1714 1203 2435 64 0 10 chr3 185345640 185345954 -42178624 + AluY SINE Alu 1 311 0 253 307 108 40 chr3 185346461 185346637 -42177941 - MIR SINE MIR -26 236 49 251 254 0 0 chr3 185347250 185347313 -42177265 - MLT1K LTR MaLR -4 584 522 572 269 123 14 chr3 185347592 185347804 -42176774 - MIR SINE MIR -5 257 23 205 194 15 15 chr3 185348030 185348097 -42176481 + (TA)n Simple_repeat Simple_repeat 2 68 0 213 221 147 44 chr3 185349201 185349269 -42175309 + MIR SINE MIR 118 192 -70 23 33 0 0 chr3 185350939 185350969 -42173609 + AT_rich Low_complexity Low_complexity 1 30 0 210 146 21 42 chr3 185351104 185351152 -42173426 + A-rich Low_complexity Low_complexity 4 50 0 24 0 0 0 chr3 185352819 185352843 -42171735 + AT_rich Low_complexity Low_complexity 1 24 0 26 50 0 0 chr3 185352913 185352953 -42171625 + AT_rich Low_complexity Low_complexity 1 40 0 331 309 47 60 chr3 185353375 185353524 -42171054 + MIR SINE MIR 88 234 -28 223 175 50 25 chr3 185353530 185353610 -42170968 + (TA)n Simple_repeat Simple_repeat 1 82 0 24 0 0 0 chr3 185353881 185353905 -42170673 + AT_rich Low_complexity Low_complexity 1 24 0 1286 318 46 38 chr3 185354783 185355460 -42169118 - ERVL LTR ERVL -3574 2190 1509 280 312 28 57 chr3 185355589 185355836 -42168742 - ERVL LTR ERVL -4432 1332 1093 3394 125 8 0 chr3 185355843 185356347 -42168231 - MER75 DNA T2_type 0 514 7 22 35 0 0 chr3 185357241 185357270 -42167308 + AT_rich Low_complexity Low_complexity 1 29 0 232 315 55 79 chr3 185357810 185357975 -42166603 + L2 LINE L2 3107 3267 -5 223 316 61 0 chr3 185358266 185358364 -42166214 - L2 LINE L2 -883 2431 2328 24 32 0 0 chr3 185358601 185358632 -42165946 + AT_rich Low_complexity Low_complexity 1 31 0 927 207 9 9 chr3 185358644 185358857 -42165721 - L1MB4 LINE L1 -14 6166 5954 581 325 146 18 chr3 185360172 185360612 -42163966 - L2 LINE L2 0 3313 2818 303 197 38 53 chr3 185361000 185361132 -42163446 - L1ME4a LINE L1 -1 6120 5991 22 80 0 0 chr3 185361217 185361267 -42163311 + AT_rich Low_complexity Low_complexity 1 50 0 1312 288 38 51 chr3 185365259 185365891 -42158687 - MLT1E2 LTR MaLR -2 624 1 2013 241 0 42 chr3 185366153 185366627 -42157951 - MER82 DNA MER2_type 0 653 200 665 267 85 0 chr3 185367061 185367237 -42157341 - MER82 DNA MER2_type -462 191 1 234 369 71 48 chr3 185367253 185367562 -42157016 - L2 LINE L2 -521 2793 2478 412 240 270 15 chr3 185367777 185367981 -42156597 + MIR SINE MIR 3 258 -4 215 164 45 15 chr3 185368352 185368419 -42156159 + (TTATA)n Simple_repeat Simple_repeat 4 72 0 2215 133 7 52 chr3 185368597 185368626 -42155952 - L1MA5 LINE L1 -334 5966 5938 1196 222 45 59 chr3 185368626 185368781 -42155797 - L1PA15 LINE L1 -229 5936 5780 180 0 0 0 chr3 185368781 185368801 -42155777 + (TG)n Simple_repeat Simple_repeat 2 21 0 1196 222 45 59 chr3 185368801 185369069 -42155509 - L1PA15 LINE L1 -385 5780 5519 968 213 0 5 chr3 185369016 185369213 -42155365 + L1 LINE L1 4833 5028 -1118 * 25 51 0 0 chr3 185369254 185369293 -42155285 + AT_rich Low_complexity Low_complexity 1 39 0 292 323 183 4 chr3 185369809 185370066 -42154512 + L2 LINE L2 2665 2967 -347 1238 328 60 4 chr3 185370471 185370987 -42153591 - MLT1H1 LTR MaLR -7 548 4 380 332 67 49 chr3 185371344 185371793 -42152785 - L1ME4a LINE L1 -302 5868 5412 28 86 0 0 chr3 185371793 185371863 -42152715 + AT_rich Low_complexity Low_complexity 1 70 0 332 281 43 105 chr3 185371896 185372248 -42152330 - L1ME4a LINE L1 -762 5384 5055 293 238 24 36 chr3 185372328 185372412 -42152166 - L1ME4a LINE L1 -1173 4973 4891 439 339 62 26 chr3 185372438 185372893 -42151685 - L1ME4a LINE L1 -2018 4128 3658 2572 173 24 15 chr3 185372932 185373471 -42151107 - L1PB4 LINE L1 -2 6154 5611 651 81 0 0 chr3 185373471 185373557 -42151021 + AluSp/q SINE Alu 191 276 -37 3714 261 20 19 chr3 185373563 185375211 -42149367 - L1PA15-16 LINE L1 -3015 3834 2178 1104 221 100 53 chr3 185375211 185375641 -42148937 - LTR7 LTR ERV1 0 450 1 3140 116 69 24 chr3 185375641 185376174 -42148404 - HERVH LTR ERV1 0 7713 7157 1552 169 4 0 chr3 185376167 185376434 -42148144 - HERVH LTR ERV1 -1697 6016 5749 * 17945 169 57 50 chr3 185376431 185380858 -42143720 - HERVH LTR ERV1 -2798 4915 458 603 229 90 107 chr3 185380860 185381428 -42143150 - HERVH LTR ERV1 -6909 804 247 193 133 67 0 chr3 185381634 185381709 -42142869 + (TA)n Simple_repeat Simple_repeat 1 80 0 7521 239 50 19 chr3 185381721 185382142 -42142436 - L1MC1 LINE L1 -423 5910 5503 2093 122 0 0 chr3 185382142 185382456 -42142122 - AluSp SINE Alu 0 313 1 7521 239 50 19 chr3 185382456 185385047 -42139531 - L1MC1 LINE L1 -830 5503 2812 425 275 76 15 chr3 185385848 185385979 -42138599 - L2 LINE L2 -6 3307 3169 825 204 10 56 chr3 185386360 185386556 -42138022 + MER63B DNA MER1_type 1 187 -249 724 190 8 0 chr3 185386559 185386680 -42137898 + MER5A DNA MER1_type 67 188 -1 306 129 0 0 chr3 185387603 185387665 -42136913 + (CA)n Simple_repeat Simple_repeat 2 63 0 378 271 68 62 chr3 185387792 185387969 -42136609 + MER5B DNA MER1_type 1 178 0 246 301 43 11 chr3 185388658 185388751 -42135827 + MIR SINE MIR 102 197 -65 296 271 169 8 chr3 185389209 185389327 -42135251 + L2 LINE L2 3119 3255 -17 28 0 0 0 chr3 185389399 185389427 -42135151 + AT_rich Low_complexity Low_complexity 1 28 0 212 0 36 0 chr3 185391364 185391392 -42133186 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 219 167 0 0 chr3 185391815 185391857 -42132721 + CT-rich Low_complexity Low_complexity 3 44 0 366 318 101 16 chr3 185392548 185392737 -42131841 - L2 LINE L2 -822 2492 2288 1647 189 7 3 chr3 185392849 185393146 -42131432 - AluSx SINE Alu -14 298 1 10886 171 21 13 chr3 185393511 185395473 -42129105 + Tigger1 DNA MER2_type 2 1978 -440 772 195 47 0 chr3 185395484 185395633 -42128945 - FAM SINE Alu -19 156 1 2243 81 0 14 chr3 185396013 185396308 -42128270 - AluY SINE Alu -18 293 3 251 400 21 14 chr3 185396526 185396671 -42127907 - MIR SINE MIR -106 156 11 31 0 0 0 chr3 185396731 185396762 -42127816 + AT_rich Low_complexity Low_complexity 1 31 0 1592 199 113 16 chr3 185397753 185398179 -42126399 - MLT1C LTR MaLR 0 467 1 24 53 0 0 chr3 185398274 185398312 -42126266 + AT_rich Low_complexity Low_complexity 1 38 0 2402 96 3 11 chr3 185398741 185399094 -42125484 + L1PA10 LINE L1 5814 6163 -5 289 188 31 0 chr3 185399094 185399158 -42125420 - MER58 DNA MER1_type -109 232 167 310 221 0 26 chr3 185399881 185399958 -42124620 + HAL1b LINE L1 419 493 -855 271 230 79 40 chr3 185401340 185401466 -42123112 - L1M4 LINE L1 -1538 4608 4478 267 209 44 0 chr3 185401688 185401779 -42122799 + (TA)n Simple_repeat Simple_repeat 2 96 0 27 0 0 0 chr3 185402706 185402733 -42121845 + AT_rich Low_complexity Low_complexity 1 27 0 358 281 102 64 chr3 185402777 185403151 -42121427 + L1M4 LINE L1 4997 5384 -762 1353 226 106 33 chr3 185403384 185403809 -42120769 + LTR40b LTR ERVL 1 456 -6 228 294 41 75 chr3 185403815 185403961 -42120617 + MIR SINE MIR 106 246 -16 4798 178 37 6 chr3 185403996 185404999 -42119579 - L1MA4 LINE L1 -915 5231 4198 5298 180 26 2 chr3 185405003 185406020 -42118558 + L1MA4 LINE L1 5254 6294 -6 30 45 0 0 chr3 185406301 185406345 -42118233 + AT_rich Low_complexity Low_complexity 1 44 0 386 293 70 20 chr3 185406593 185406969 -42117609 + MLT1G LTR MaLR 86 536 -54 2007 120 76 28 chr3 185406975 185407321 -42117257 + THE1B LTR MaLR 1 454 -3 25 0 0 0 chr3 185408081 185408106 -42116472 + AT_rich Low_complexity Low_complexity 1 25 0 516 62 111 0 chr3 185408256 185408337 -42116241 - L1PA4 LINE L1 -2 6153 6064 19751 36 7 3 chr3 185408337 185409171 -42115407 - L1PA4 LINE L1 -3 6152 5322 198 0 0 0 chr3 185409171 185409193 -42115385 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 19751 36 7 3 chr3 185409193 185411575 -42113003 - L1PA4 LINE L1 -833 5322 2919 1327 123 24 14 chr3 185411598 185411809 -42112769 + THE1B LTR MaLR 152 364 0 10593 102 29 6 chr3 185411809 185413353 -42111225 + THE1B-int LTR MaLR 1 1580 0 1763 171 68 34 chr3 185413353 185413705 -42110873 + THE1B LTR MaLR 1 364 0 201 182 39 39 chr3 185414075 185414152 -42110426 + (TATAA)n Simple_repeat Simple_repeat 2 78 0 328 359 0 47 chr3 185417598 185417726 -42106852 - L2 LINE L2 -4 3268 3147 1131 300 37 48 chr3 185418502 185419069 -42105509 - MER90 LTR ERV1 -12 563 3 5179 210 45 36 chr3 185419070 185419550 -42105028 - L1MC3 LINE L1 -690 7095 6621 210 37 0 0 chr3 185419550 185419577 -42105001 + (TG)n Simple_repeat Simple_repeat 2 28 0 5179 210 45 36 chr3 185419577 185419589 -42104989 - L1MC3 LINE L1 -1164 6621 6611 183 80 0 0 chr3 185419589 185419614 -42104964 + (TA)n Simple_repeat Simple_repeat 2 26 0 5179 210 45 36 chr3 185419614 185420503 -42104075 - L1MC3 LINE L1 -1174 6611 5701 252 0 0 0 chr3 185420823 185420851 -42103727 + (CA)n Simple_repeat Simple_repeat 1 28 0 2323 81 0 3 chr3 185421155 185421452 -42103126 + AluY SINE Alu 1 296 -15 363 213 0 0 chr3 185421453 185421533 -42103045 + (TA)n Simple_repeat Simple_repeat 1 80 0 297 146 21 83 chr3 185421536 185421632 -42102946 - L1MC4 LINE L1 -1339 6703 6614 279 308 0 0 chr3 185421633 185421753 -42102825 + (TA)n Simple_repeat Simple_repeat 1 120 0 363 213 0 0 chr3 185421872 185421952 -42102626 + (TA)n Simple_repeat Simple_repeat 1 80 0 305 156 21 83 chr3 185421955 185422051 -42102527 - L1MC4 LINE L1 -1339 6703 6614 372 242 0 0 chr3 185422052 185422147 -42102431 + (TA)n Simple_repeat Simple_repeat 2 96 0 235 152 0 0 chr3 185422147 185422193 -42102385 + LTR66 LTR ERVL 394 439 -171 200 244 0 0 chr3 185422194 185422235 -42102343 + (TA)n Simple_repeat Simple_repeat 2 42 0 2032 201 52 35 chr3 185422606 185422919 -42101659 + MER82 DNA MER2_type 2 327 -326 1787 163 50 47 chr3 185422919 185423282 -42101296 - THE1B LTR MaLR 0 364 1 2032 201 52 35 chr3 185423282 185423450 -42101128 + MER82 DNA MER2_type 327 491 -162 272 250 31 0 chr3 185423455 185423519 -42101059 - MIR SINE MIR -79 183 118 383 279 96 15 chr3 185423642 185423778 -42100800 - L1MEc LINE L1 -5724 672 526 953 272 21 21 chr3 185423824 185424035 -42100543 + L1MEc LINE L1 606 819 -5577 1798 146 58 25 chr3 185424035 185424398 -42100180 - THE1C LTR MaLR 0 375 1 953 272 21 21 chr3 185424398 185424521 -42100057 + L1MEc LINE L1 818 940 -5456 2035 144 3 0 chr3 185424594 185424893 -42099685 + AluSg SINE Alu 1 300 -10 401 315 9 0 chr3 185425049 185425160 -42099418 + MIR SINE MIR 49 160 -102 22 0 0 0 chr3 185426062 185426084 -42098494 + AT_rich Low_complexity Low_complexity 1 22 0 2297 62 3 37 chr3 185426199 185426521 -42098057 + AluY SINE Alu 1 311 0 189 0 0 0 chr3 185427174 185427195 -42097383 + (CTA)n Simple_repeat Simple_repeat 3 23 0 291 54 0 0 chr3 185427196 185427233 -42097345 + (CA)n Simple_repeat Simple_repeat 2 38 0 28 48 0 0 chr3 185431946 185431988 -42092590 + AT_rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr3 185434176 185434200 -42090378 + AT_rich Low_complexity Low_complexity 1 24 0 270 304 14 0 chr3 185434845 185434914 -42089664 - MIR SINE MIR -91 171 102 23 33 0 0 chr3 185434947 185434977 -42089601 + AT_rich Low_complexity Low_complexity 1 30 0 62 52 0 0 chr3 185435546 185435643 -42088935 + AT_rich Low_complexity Low_complexity 1 97 0 194 200 25 0 chr3 185436446 185436486 -42088092 + L2 LINE L2 3273 3313 0 21 0 0 0 chr3 185436593 185436614 -42087964 + AT_rich Low_complexity Low_complexity 1 21 0 36 82 0 0 chr3 185437379 185437464 -42087114 + AT_rich Low_complexity Low_complexity 1 85 0 349 344 84 53 chr3 185438346 185438559 -42086019 + L1ME1 LINE L1 5287 5517 -604 1865 141 61 25 chr3 185438559 185438921 -42085657 - THE1C LTR MaLR 0 375 1 349 344 84 53 chr3 185438921 185439065 -42085513 + L1ME1 LINE L1 5517 5655 -466 341 289 46 33 chr3 185439078 185439230 -42085348 + L1ME1 LINE L1 5930 6083 -83 234 299 118 8 chr3 185439162 185439289 -42085289 + L1MA10 LINE L1 6176 6316 -18 * 21 57 0 0 chr3 185439577 185439612 -42084966 + AT_rich Low_complexity Low_complexity 1 35 0 201 320 90 41 chr3 185439644 185439766 -42084812 + L3 LINE CR1 332 459 -1118 22 0 0 0 chr3 185440934 185440956 -42083622 + AT_rich Low_complexity Low_complexity 1 22 0 1337 301 21 38 chr3 185441386 185442202 -42082376 + L2 LINE L2 2505 3309 -4 210 396 37 12 chr3 185442489 185442653 -42081925 + L2 LINE L2 2571 2738 -576 216 258 0 86 chr3 185443897 185443990 -42080588 + MIR SINE MIR 132 216 -46 200 134 0 90 chr3 185444477 185444544 -42080034 + (TTTTTA)n Simple_repeat Simple_repeat 2 62 0 7261 94 14 15 chr3 185444554 185445612 -42078966 + MER11C LTR ERVK 1 1057 -14 22 80 0 0 chr3 185446184 185446234 -42078344 + AT_rich Low_complexity Low_complexity 1 50 0 273 336 38 38 chr3 185447797 185447928 -42076650 + L2 LINE L2 3182 3312 -1 22 56 0 0 chr3 185448287 185448323 -42076255 + AT_rich Low_complexity Low_complexity 1 36 0 379 241 38 44 chr3 185448328 185448486 -42076092 - L1ME2 LINE L1 -10 6154 5998 234 294 137 0 chr3 185448861 185448963 -42075615 + MIR SINE MIR 77 192 -70 506 43 14 0 chr3 185449219 185449288 -42075290 + (TCTA)n Simple_repeat Simple_repeat 1 70 0 565 265 76 40 chr3 185449458 185449707 -42074871 + MIR SINE MIR 5 262 0 204 211 0 0 chr3 185449734 185449772 -42074806 + MIR SINE MIR 68 105 -157 203 179 0 0 chr3 185450119 185450158 -42074420 + (TTA)n Simple_repeat Simple_repeat 2 40 0 33 56 0 0 chr3 185450240 185450294 -42074284 + AT_rich Low_complexity Low_complexity 1 54 0 21 36 0 0 chr3 185451462 185451490 -42073088 + AT_rich Low_complexity Low_complexity 1 28 0 230 290 28 47 chr3 185451655 185451762 -42072816 - L2 LINE L2 0 3313 3209 273 29 0 0 chr3 185452656 185452690 -42071888 + (TG)n Simple_repeat Simple_repeat 1 34 0 1404 244 69 39 chr3 185452801 185453299 -42071279 + MER41B LTR ERV1 132 486 0 365 255 19 9 chr3 185453310 185453416 -42071162 + MER41B-int LTR ERV1 398 504 -6172 752 188 52 101 chr3 185453604 185453892 -42070686 + MER41B-int LTR ERV1 609 882 -5794 1794 253 50 15 chr3 185454705 185455163 -42069415 + MER41B-int LTR ERV1 1251 1724 -4952 816 194 0 19 chr3 185455182 185455337 -42069241 + MER41B-int LTR ERV1 4677 4828 -1848 1999 274 62 24 chr3 185456046 185456750 -42067828 + MER41B-int LTR ERV1 5945 6675 -1 2109 220 38 15 chr3 185456807 185457326 -42067252 + MER41B LTR ERV1 100 468 -10 24 0 0 0 chr3 185458794 185458818 -42065760 + AT_rich Low_complexity Low_complexity 1 24 0 23 78 0 0 chr3 185459148 185459199 -42065379 + AT_rich Low_complexity Low_complexity 1 51 0 2200 184 40 16 chr3 185459258 185459687 -42064891 - MLT1C LTR MaLR -2 465 27 1941 103 0 35 chr3 185462607 185462924 -42061654 + AluSc SINE Alu 1 307 0 36 40 0 0 chr3 185463216 185463266 -42061312 + AT_rich Low_complexity Low_complexity 1 50 0 1393 231 22 6 chr3 185463288 185463600 -42060978 - MER58B DNA MER1_type -1 340 24 2184 149 14 3 chr3 185463704 185464074 -42060504 - L1MA3 LINE L1 -21 6284 5911 744 135 40 7 chr3 185464063 185464221 -42060357 + L1MC/D LINE L1 5436 5602 -730 * 24 0 0 0 chr3 185464370 185464394 -42060184 + AT_rich Low_complexity Low_complexity 1 24 0 25 31 0 0 chr3 185464693 185464725 -42059853 + AT_rich Low_complexity Low_complexity 1 32 0 391 340 31 52 chr3 185464896 185465090 -42059488 + MIR SINE MIR 63 252 -10 1687 134 19 4 chr3 185465668 185465930 -42058648 - AluSx SINE Alu -19 293 28 511 163 10 10 chr3 185466029 185466127 -42058451 + MER4A LTR ERV1 1 98 -566 1401 137 12 87 chr3 185466127 185466456 -42058122 + MER4A LTR ERV1 263 625 -39 7205 45 22 0 chr3 185466456 185467570 -42057008 - L1PA5 LINE L1 0 6154 5037 14977 51 6 5 chr3 185467670 185469616 -42054962 - L1PA5 LINE L1 -1632 4514 2566 4827 109 0 14 chr3 185469611 185470337 -42054241 + L1P LINE L1 1063 1778 -4368 * 441 55 0 0 chr3 185470338 185470393 -42054185 + MER4A LTR ERV1 610 664 0 1679 186 0 3 chr3 185470545 185470835 -42053743 + AluJb SINE Alu 1 289 -23 875 253 97 56 chr3 185471547 185472030 -42052548 + MLT1D LTR MaLR 1 503 -2 1124 44 0 0 chr3 185473749 185473886 -42050692 + L1PA3 LINE L1 6016 6152 -3 215 0 67 0 chr3 185473891 185473921 -42050657 + (TAAAA)n Simple_repeat Simple_repeat 2 33 0 25 31 0 0 chr3 185473921 185473953 -42050625 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 185474039 185474060 -42050518 + AT_rich Low_complexity Low_complexity 1 21 0 32 57 0 0 chr3 185474201 185474254 -42050324 + AT_rich Low_complexity Low_complexity 1 53 0 33 56 0 0 chr3 185474421 185474475 -42050103 + AT_rich Low_complexity Low_complexity 1 54 0 27 29 0 0 chr3 185474546 185474580 -42049998 + AT_rich Low_complexity Low_complexity 1 34 0 280 221 103 0 chr3 185474983 185475051 -42049527 - MIR SINE MIR -68 194 120 535 301 83 9 chr3 185475118 185475334 -42049244 - MIR SINE MIR 0 262 31 519 263 62 24 chr3 185476374 185476583 -42047995 - L1MC/D LINE L1 -632 5610 5394 1068 272 53 100 chr3 185476659 185477170 -42047408 - MLT1-int LTR MaLR -1 1370 884 582 272 28 28 chr3 185477252 185477432 -42047146 - MLT1-int LTR MaLR -479 892 713 226 220 165 0 chr3 185477460 185477569 -42047009 - MLT1D LTR MaLR -314 191 65 225 328 0 0 chr3 185477652 185477716 -42046862 - L2 LINE L2 -876 2438 2375 21 0 0 0 chr3 185477803 185477824 -42046754 + AT_rich Low_complexity Low_complexity 1 21 0 4935 157 24 7 chr3 185478096 185479919 -42044659 - L1PA15 LINE L1 -6 6159 4311 23 92 0 0 chr3 185480513 185480578 -42044000 + AT_rich Low_complexity Low_complexity 1 65 0 792 303 95 36 chr3 185480582 185481157 -42043421 - L2 LINE L2 -44 3269 2648 920 192 85 66 chr3 185481637 185481955 -42042623 + MER33 DNA MER1_type 1 324 0 6975 136 81 39 chr3 185482459 185482938 -42041640 + Tigger1 DNA MER2_type 1048 1505 -913 2236 111 0 0 chr3 185482938 185483236 -42041342 + AluSg SINE Alu 1 298 -12 6975 136 81 39 chr3 185483236 185483428 -42041150 + Tigger1 DNA MER2_type 1505 1687 -731 1972 139 0 23 chr3 185483428 185483738 -42040840 + AluSx SINE Alu 1 303 -9 6975 136 81 39 chr3 185483738 185484380 -42040198 + Tigger1 DNA MER2_type 1687 2418 0 24 32 0 0 chr3 185484774 185484805 -42039773 + AT_rich Low_complexity Low_complexity 1 31 0 349 302 43 9 chr3 185486375 185486491 -42038087 - L2 LINE L2 -1 3312 3193 231 203 0 54 chr3 185488195 185488269 -42036309 - L1MCa LINE L1 -4368 2058 1989 1145 92 0 20 chr3 185488319 185488472 -42036106 - AluSg1 SINE Alu -159 150 1 186 200 0 25 chr3 185488994 185489034 -42035544 - MIR SINE MIR -6 256 218 2658 163 49 6 chr3 185489568 185490653 -42033925 + L1PA13 LINE L1 4863 6163 0 303 316 32 0 chr3 185490885 185490980 -42033598 - MER94 DNA DNA -11 123 26 22 70 0 0 chr3 185492825 185492868 -42031710 + AT_rich Low_complexity Low_complexity 1 43 0 234 0 0 0 chr3 185493018 185493044 -42031534 + (CA)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr3 185493446 185493470 -42031108 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr3 185493633 185493666 -42030912 + AT_rich Low_complexity Low_complexity 1 33 0 180 241 0 0 chr3 185493690 185493748 -42030830 + (TATATG)n Simple_repeat Simple_repeat 1 58 0 4258 214 51 10 chr3 185495663 185497393 -42027185 - L1PA16 LINE L1 -3 6163 4367 2088 93 3 24 chr3 185498308 185498623 -42025955 - AluSp SINE Alu 0 309 1 204 388 48 0 chr3 185498720 185498823 -42025755 + L2 LINE L2 3140 3247 -25 23 0 0 0 chr3 185499388 185499411 -42025167 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 185500897 185500919 -42023659 + AT_rich Low_complexity Low_complexity 1 22 0 4668 172 12 52 chr3 185501733 185502982 -42021596 - L1PA16 LINE L1 -8 6158 4959 5557 211 5 15 chr3 185503224 185504535 -42020043 - L1 LINE L1 -1190 4956 3660 225 0 0 0 chr3 185505046 185505071 -42019507 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 7464 34 0 0 chr3 185505273 185506370 -42018208 - L1PA3 LINE L1 -5 6150 5048 6674 26 1 0 chr3 185506370 185507167 -42017411 + L1PA3 LINE L1 4248 5045 -1101 348 24 0 0 chr3 185508443 185508484 -42016094 + (TG)n Simple_repeat Simple_repeat 2 42 0 2028 135 0 0 chr3 185509239 185509536 -42015042 - AluSx SINE Alu -15 297 1 30 0 0 0 chr3 185510117 185510147 -42014431 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 185510331 185510352 -42014226 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 185512856 185512878 -42011700 + AT_rich Low_complexity Low_complexity 1 22 0 7259 212 11 14 chr3 185513002 185513487 -42011091 - L1PA16 LINE L1 -3 6163 5678 2141 82 3 35 chr3 185513487 185513804 -42010774 - AluY SINE Alu -4 307 1 7259 212 11 14 chr3 185513804 185515940 -42008638 - L1PA16 LINE L1 -488 5678 3552 1050 234 39 45 chr3 185515940 185516226 -42008352 - MER68 LTR ERV1 -278 284 1 548 210 51 0 chr3 185516360 185516498 -42008080 + L1MB7 LINE L1 6020 6164 -20 637 302 13 27 chr3 185517050 185517275 -42007303 - MLT1H1 LTR MaLR -19 536 315 414 283 146 23 chr3 185517302 185517521 -42007057 - MLT1H1 LTR MaLR -344 246 1 189 74 0 0 chr3 185519414 185519441 -42005137 + (GA)n Simple_repeat Simple_repeat 2 28 0 213 264 185 56 chr3 185520203 185520381 -42004197 - L2 LINE L2 -8 3305 3105 423 319 51 0 chr3 185521899 185522037 -42002541 + MIR3 SINE MIR 54 198 -10 290 195 13 0 chr3 185522657 185522734 -42001844 + GA-rich Low_complexity Low_complexity 1 78 0 63 26 0 0 chr3 185523762 185523839 -42000739 + AT_rich Low_complexity Low_complexity 1 77 0 2159 113 0 3 chr3 185524400 185524710 -41999868 - AluSx SINE Alu -3 309 1 4180 169 10 3 chr3 185525012 185525718 -41998860 + MER50 LTR ERV1 1 711 -23 23 0 0 0 chr3 185526251 185526274 -41998304 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr3 185526787 185526816 -41997762 + AT_rich Low_complexity Low_complexity 1 29 0 392 167 0 13 chr3 185526849 185526927 -41997651 - L1MA9 LINE L1 -11 6301 6225 300 186 0 0 chr3 185526941 185527000 -41997578 + (TG)n Simple_repeat Simple_repeat 2 60 0 1275 274 84 15 chr3 185527108 185527513 -41997065 - MER70A LTR ERVL -36 436 4 1264 208 12 4 chr3 185527551 185527792 -41996786 - MER70A-int LTR ERVL -26 4997 4755 2211 180 38 55 chr3 185527840 185528313 -41996265 + MER70-int LTR ERVL 4356 4820 -203 1644 267 82 64 chr3 185528325 185529873 -41994705 - L1M4c LINE L1 -3974 2238 977 2841 10 0 0 chr3 185529873 185530186 -41994392 - AluYb8 SINE Alu -5 313 1 1644 267 82 64 chr3 185530186 185530731 -41993847 - L1M4c LINE L1 -5235 977 443 242 286 0 0 chr3 185530747 185530810 -41993768 - L1M4c LINE L1 -5926 215 153 257 290 29 0 chr3 185530829 185530898 -41993680 - L1M4c LINE L1 -6069 72 2 277 0 94 0 chr3 185531717 185531770 -41992808 + (TA)n Simple_repeat Simple_repeat 2 59 0 674 165 0 8 chr3 185531771 185531892 -41992686 - L1 LINE L1 -1218 4928 4809 * 1973 241 38 4 chr3 185531886 185532384 -41992194 + L1MB2 LINE L1 5621 6135 -36 875 277 41 77 chr3 185532431 185532948 -41991630 + MER34 LTR ERV1 20 517 -25 1283 198 23 12 chr3 185532993 185533016 -41991562 - AluSx SINE Alu -5 307 286 189 0 0 0 chr3 185533016 185533037 -41991541 + (TGGA)n Simple_repeat Simple_repeat 1 21 0 1283 198 23 12 chr3 185533037 185533192 -41991386 - AluSx SINE Alu -26 286 123 423 0 0 0 chr3 185533192 185533239 -41991339 + (TG)n Simple_repeat Simple_repeat 2 48 0 1283 198 23 12 chr3 185533239 185533317 -41991261 - AluSx SINE Alu -189 123 47 29 0 0 0 chr3 185533327 185533356 -41991222 + AT_rich Low_complexity Low_complexity 1 29 0 207 139 0 0 chr3 185533836 185533872 -41990706 + (TA)n Simple_repeat Simple_repeat 2 37 0 570 240 140 0 chr3 185534238 185534409 -41990169 + L1 LINE L1 4930 5124 -1022 * 1760 161 58 3 chr3 185534403 185534764 -41989814 - L1 LINE L1 -1389 4757 4377 1312 212 0 48 chr3 185534766 185535058 -41989520 - AluJb SINE Alu -22 290 13 6079 208 29 47 chr3 185535088 185536202 -41988376 - L1 LINE L1 -2008 5557 4424 2244 111 0 0 chr3 185536202 185536508 -41988070 - AluSc SINE Alu -3 306 1 6079 208 29 47 chr3 185536508 185538612 -41985966 - L1 LINE L1 -3141 4424 2528 * 6156 206 41 82 chr3 185538610 185540282 -41984296 - L1 LINE L1 -5947 1618 16 527 176 0 76 chr3 185540287 185540418 -41984160 - L1M3 LINE L1 -728 5440 5320 328 211 19 0 chr3 185540418 185540499 -41984079 + (TA)n Simple_repeat Simple_repeat 2 87 -20 2266 70 3 11 chr3 185540499 185540786 -41983792 + AluY SINE Alu 3 287 -24 328 211 19 0 chr3 185540786 185540808 -41983770 + (TA)n Simple_repeat Simple_repeat 87 107 0 249 259 47 0 chr3 185540813 185540898 -41983680 - L1MC4 LINE L1 -1340 6702 6614 230 229 0 62 chr3 185540862 185540958 -41983620 + L1MC4 LINE L1 6614 6703 -1339 * 237 246 0 0 chr3 185540960 185541025 -41983553 + (CATA)n Simple_repeat Simple_repeat 2 66 0 263 300 0 0 chr3 185541026 185541116 -41983462 - L1MC4 LINE L1 -1339 6703 6614 277 289 0 0 chr3 185541122 185541212 -41983366 - L1MC4 LINE L1 -1339 6703 6614 223 205 0 0 chr3 185541212 185541251 -41983327 + (TA)n Simple_repeat Simple_repeat 2 40 0 239 267 47 0 chr3 185541258 185541344 -41983234 - L1MC4 LINE L1 -1340 6702 6613 267 273 23 0 chr3 185541361 185541449 -41983129 + L1MC4 LINE L1 6614 6703 -1339 218 233 0 0 chr3 185541451 185541494 -41983084 + (TA)n Simple_repeat Simple_repeat 2 44 0 307 258 21 21 chr3 185541494 185541587 -41982991 + L1MC4 LINE L1 6611 6703 -1339 284 254 8 0 chr3 185541589 185541707 -41982871 + (TA)n Simple_repeat Simple_repeat 2 120 0 1224 244 35 35 chr3 185541718 185542148 -41982430 - L1M4c LINE L1 -848 6258 5829 1823 159 34 23 chr3 185542267 185542651 -41981927 - L1MA2 LINE L1 0 6304 5917 1835 149 65 9 chr3 185542653 185542976 -41981602 - L1MA2 LINE L1 -480 5825 5485 1593 219 62 4 chr3 185543409 185543880 -41980698 - L1M4c LINE L1 -1322 5784 5287 260 220 0 0 chr3 185543898 185543957 -41980621 + L1M4 LINE L1 4323 4381 -1765 854 192 39 35 chr3 185543961 185544164 -41980414 + L1PA16 LINE L1 5963 6166 0 * 1781 222 18 14 chr3 185544148 185544594 -41979984 - L1M4c LINE L1 -1799 5307 4860 27250 55 24 5 chr3 185544596 185548070 -41976508 + HERV17 LTR ERV1 954 4444 -4182 8597 54 1 0 chr3 185548171 185549225 -41975353 + HERV17 LTR ERV1 4965 6019 -2607 272 79 0 0 chr3 185549219 185549257 -41975321 + HERV17 LTR ERV1 7511 7548 -1078 * 2306 68 0 0 chr3 185549247 185549539 -41975039 + HERV17 LTR ERV1 8335 8626 0 2423 55 18 30 chr3 185549539 185549868 -41974710 + LTR17 LTR ERV1 1 325 -455 218 54 0 27 chr3 185549868 185549905 -41974673 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 2964 239 67 29 chr3 185549905 185551031 -41973547 - L1M4c LINE L1 -2243 4863 3696 714 264 66 38 chr3 185551032 185551375 -41973203 - MSTD LTR MaLR 0 396 1 1197 277 38 37 chr3 185551375 185551977 -41972601 - L1M4c LINE L1 -3407 3699 3094 2064 140 3 0 chr3 185551977 185552277 -41972301 + AluSx SINE Alu 1 301 -11 1197 277 38 37 chr3 185552277 185552646 -41971932 - L1M4c LINE L1 -4012 3094 2727 1318 263 51 20 chr3 185552695 185553205 -41971373 - L1M4c LINE L1 -4559 2549 2024 279 305 44 53 chr3 185553373 185553638 -41970940 - L1M4c LINE L1 -5736 1291 66 28 29 0 0 chr3 185553640 185553675 -41970903 + AT_rich Low_complexity Low_complexity 1 35 0 250 309 10 31 chr3 185554253 185554350 -41970228 - MER5B DNA MER1_type -80 98 4 188 247 182 13 chr3 185555088 185555165 -41969413 + MIR SINE MIR 60 149 -113 224 128 0 21 chr3 185555194 185555241 -41969337 + (TA)n Simple_repeat Simple_repeat 1 46 0 2371 133 25 3 chr3 185555249 185555616 -41968962 + THE1C LTR MaLR 1 375 0 6483 135 69 18 chr3 185555616 185556708 -41967870 + THE1C-int LTR MaLR 1 1147 -433 4865 108 133 0 chr3 185557956 185558685 -41965893 - LTR12 LTR ERV1 0 826 1 208 268 28 0 chr3 185558735 185558806 -41965772 + T-rich Low_complexity Low_complexity 2 74 0 983 291 34 13 chr3 185559070 185559537 -41965041 - L1ME3A LINE L1 -306 5864 5388 1643 180 7 24 chr3 185560379 185560674 -41963904 - AluJb SINE Alu -16 296 7 393 287 54 12 chr3 185560833 185561000 -41963578 + MIR SINE MIR 15 188 -74 195 42 0 0 chr3 185561089 185561113 -41963465 + (TAAA)n Simple_repeat Simple_repeat 3 26 0 304 329 26 20 chr3 185561116 185561268 -41963310 + L1ME2 LINE L1 5733 5885 -279 204 139 0 28 chr3 185561288 185561324 -41963254 + (CATATA)n Simple_repeat Simple_repeat 6 40 0 201 125 0 50 chr3 185561538 185561578 -41963000 + (TATATG)n Simple_repeat Simple_repeat 3 40 0 7220 154 48 2 chr3 185561584 185562821 -41961757 - HSMAR2 DNA Mariner 0 1302 10 324 102 0 0 chr3 185562828 185562877 -41961701 + (TG)n Simple_repeat Simple_repeat 2 50 0 254 300 0 14 chr3 185563111 185563181 -41961397 - L1ME LINE L1 -578 5543 5475 22 0 0 0 chr3 185563357 185563379 -41961199 + AT_rich Low_complexity Low_complexity 1 22 0 4592 226 31 9 chr3 185563384 185564601 -41959977 - L1 LINE L1 -2048 4098 2855 261 273 133 47 chr3 185565949 185566077 -41958501 - L2 LINE L2 -20 3293 3155 1104 237 99 14 chr3 185567263 185567618 -41956960 + MLT1C LTR MaLR 83 467 0 187 333 18 0 chr3 185567822 185567879 -41956699 - L2 LINE L2 0 3272 3215 513 329 104 56 chr3 185568155 185568712 -41955866 - L2 LINE L2 -376 2938 2355 23 0 0 0 chr3 185569950 185569973 -41954605 + AT_rich Low_complexity Low_complexity 1 23 0 4760 25 0 0 chr3 185570186 185570747 -41953831 + L1PA2 LINE L1 5593 6153 -2 311 0 0 25 chr3 185570769 185570809 -41953769 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 690 124 41 28 chr3 185571096 185571241 -41953337 + MER51-int LTR ERV1 4052 4198 -3339 569 255 73 57 chr3 185571239 185571486 -41953092 + MER51-int LTR ERV1 627 877 -6939 * 513 306 25 50 chr3 185571496 185571777 -41952801 + MER51-int LTR ERV1 1549 1822 -5269 307 307 24 64 chr3 185572427 185572555 -41952023 + MER51-int LTR ERV1 2342 2474 -4202 1683 157 18 0 chr3 185572555 185572835 -41951743 + AluSx SINE Alu 1 285 -27 243 0 0 0 chr3 185572836 185572863 -41951715 + (CA)n Simple_repeat Simple_repeat 2 28 0 307 307 24 64 chr3 185572863 185573061 -41951517 + MER51-int LTR ERV1 2473 2657 -4019 920 87 16 0 chr3 185573741 185573867 -41950711 + BC200 scRNA scRNA 1 128 -72 423 175 0 0 chr3 185573910 185573990 -41950588 + AluS SINE Alu 230 309 -1 1732 163 0 35 chr3 185574597 185574910 -41949668 - AluJo SINE Alu -10 302 1 21 0 0 0 chr3 185574973 185574994 -41949584 + AT_rich Low_complexity Low_complexity 1 21 0 23 78 0 0 chr3 185575530 185575581 -41948997 + AT_rich Low_complexity Low_complexity 1 51 0 21 95 0 0 chr3 185575908 185575971 -41948607 + AT_rich Low_complexity Low_complexity 1 63 0 22 56 0 0 chr3 185576211 185576247 -41948331 + AT_rich Low_complexity Low_complexity 1 36 0 252 268 65 16 chr3 185576706 185576829 -41947749 - L1MEc LINE L1 -2410 4016 3888 424 308 89 38 chr3 185576935 185577328 -41947250 - L1MEc LINE L1 -3463 2963 2551 418 340 98 16 chr3 185577411 185577726 -41946852 - L1MEc LINE L1 -4164 2443 2103 2115 83 35 0 chr3 185577823 185578112 -41946466 - AluY SINE Alu -12 299 1 21 0 0 0 chr3 185578294 185578315 -41946263 + AT_rich Low_complexity Low_complexity 1 21 0 340 279 52 26 chr3 185578367 185578521 -41946057 - L1MEc LINE L1 -4967 1461 1304 355 313 191 21 chr3 185578576 185578905 -41945673 - L1MEc LINE L1 -5250 1176 792 357 313 44 25 chr3 185579305 185579465 -41945113 - HAL1b LINE L1 -1129 219 57 27 0 0 0 chr3 185579503 185579530 -41945048 + AT_rich Low_complexity Low_complexity 1 27 0 297 220 0 0 chr3 185579534 185579584 -41944994 + AluJ/monomer SINE Alu 4 53 -247 817 236 139 40 chr3 185579963 185580381 -41944197 - Charlie1b DNA MER1_type -6 517 28 24 0 0 0 chr3 185580735 185580759 -41943819 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr3 185581571 185581600 -41942978 + AT_rich Low_complexity Low_complexity 1 29 0 1056 266 45 64 chr3 185582051 185582491 -41942087 + LTR16A1 LTR ERVL 15 446 -11 1878 134 0 7 chr3 185582498 185582816 -41941762 + AluSx SINE Alu 1 316 0 608 323 22 49 chr3 185583178 185583667 -41940911 - HAL1b LINE L1 -360 988 513 1893 291 97 22 chr3 185583682 185585056 -41939522 - L1ME3A LINE L1 -10 6578 5099 1523 156 52 15 chr3 185585056 185585348 -41939230 + AluSg SINE Alu 1 302 0 21 36 0 0 chr3 185585492 185585520 -41939058 + AT_rich Low_complexity Low_complexity 1 28 0 287 336 35 14 chr3 185585692 185585835 -41938743 - L1ME3A LINE L1 -2021 4543 4398 2426 223 114 51 chr3 185585948 185585972 -41938606 - L1MCa LINE L1 -4062 2683 2662 225 65 0 0 chr3 185585972 185586003 -41938575 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2426 223 114 51 chr3 185586003 185587367 -41937211 - L1MCa LINE L1 -4083 2662 1101 592 306 52 26 chr3 185587361 185587632 -41936946 - L1MCa LINE L1 -5765 280 3 * 40280 39 27 2 chr3 185587778 185592807 -41931771 + L1P LINE L1 1 5154 -992 1154 219 66 46 chr3 185592908 185593300 -41931278 - LTR37B LTR ERV1 -63 405 6 13364 184 26 23 chr3 185593559 185599078 -41925500 + L1MA2 LINE L1 14 5519 -2204 533 125 0 0 chr3 185599078 185599158 -41925420 + MADE1 DNA Mariner 1 80 0 13364 184 26 23 chr3 185599158 185599763 -41924815 + L1MA2 LINE L1 5519 6121 -1602 1832 158 30 3 chr3 185599763 185600066 -41924512 + AluSx SINE Alu 1 311 -1 13364 184 26 23 chr3 185600066 185600475 -41924103 + L1MA2 LINE L1 6121 7434 -289 195 42 0 0 chr3 185600618 185600642 -41923936 + (A)n Simple_repeat Simple_repeat 1 24 0 3791 149 42 13 chr3 185600642 185601335 -41923243 + L1MA3 LINE L1 5593 6305 0 2549 185 87 41 chr3 185601497 185602082 -41922496 - LTR9 LTR ERV1 0 612 1 1065 107 7 0 chr3 185602082 185602232 -41922346 - HUERS-P3 LTR ERV1 -1 8918 8768 * 12330 120 35 4 chr3 185602231 185604125 -41920453 - HUERS-P3b LTR ERV1 -2392 5026 3073 1127 218 50 4 chr3 185604125 185604364 -41920214 + LTR8 LTR ERV1 1 250 -441 2150 189 31 3 chr3 185604370 185604757 -41919821 + LTR8 LTR ERV1 41 438 -253 5549 258 62 59 chr3 185604759 185606648 -41917930 - HUERS-P3b LTR ERV1 -4775 2643 748 612 219 53 26 chr3 185606654 185606805 -41917773 - HUERS-P3b LTR ERV1 -6855 563 409 2243 175 74 93 chr3 185606901 185607525 -41917053 - LTR9 LTR ERV1 0 612 1 22 35 0 0 chr3 185608269 185608298 -41916280 + AT_rich Low_complexity Low_complexity 1 29 0 481 237 167 13 chr3 185608554 185608710 -41915868 - L2 LINE L2 -5 3308 3129 323 344 47 33 chr3 185608710 185608925 -41915653 - MER90 LTR ERV1 0 614 397 433 282 141 6 chr3 185608976 185609132 -41915446 - L2 LINE L2 -1090 2224 2048 206 250 219 50 chr3 185609358 185609518 -41915060 - MIR SINE MIR -56 206 20 254 345 11 11 chr3 185609760 185609847 -41914731 + MER5A DNA MER1_type 82 168 -21 433 239 145 50 chr3 185609875 185610034 -41914544 + MER5B DNA MER1_type 5 178 0 27 0 0 0 chr3 185611185 185611212 -41913366 + AT_rich Low_complexity Low_complexity 1 27 0 22 35 0 0 chr3 185611525 185611554 -41913024 + AT_rich Low_complexity Low_complexity 1 29 0 7104 57 0 7 chr3 185612711 185613885 -41910693 - L1PA5 LINE L1 -2 6152 4983 557 311 53 15 chr3 185614060 185614266 -41910312 - MIR SINE MIR -11 251 38 21 57 0 0 chr3 185614379 185614414 -41910164 + AT_rich Low_complexity Low_complexity 1 35 0 200 322 44 33 chr3 185614563 185614653 -41909925 - MIR SINE MIR -58 150 60 2235 280 54 25 chr3 185616037 185616166 -41908412 + L1ME3A LINE L1 5030 5154 -1016 2239 102 7 0 chr3 185616166 185616461 -41908117 - AluY SINE Alu -14 297 1 2235 280 54 25 chr3 185616461 185617441 -41907137 + L1ME3A LINE L1 5154 6170 0 1805 219 25 39 chr3 185619012 185619450 -41905128 + MER54A LTR ERVL 470 901 0 204 159 0 23 chr3 185620572 185620616 -41903962 + A-rich Low_complexity Low_complexity 1 43 0 245 298 92 0 chr3 185621014 185621155 -41903423 - HAL1b LINE L1 -12 1336 1183 1663 290 93 18 chr3 185621264 185621939 -41902639 + L1MA8 LINE L1 7 732 -6298 562 254 0 0 chr3 185621935 185622077 -41902501 + L1MA8 LINE L1 3010 3151 -3956 * 4627 225 39 39 chr3 185622112 185623456 -41901122 - L1 LINE L1 -1439 4707 3363 2296 221 37 13 chr3 185623452 185624560 -41900018 + L1MA8 LINE L1 5211 6269 -837 * 2041 199 36 40 chr3 185624569 185625071 -41899507 + L1MA8 LINE L1 6749 7248 -3 21 36 0 0 chr3 185626392 185626420 -41898158 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 185626505 185626527 -41898051 + AT_rich Low_complexity Low_complexity 1 22 0 3801 166 55 1 chr3 185627641 185628348 -41896230 + Tigger2 DNA MER2_type 1 745 -1973 1160 138 28 113 chr3 185628413 185628695 -41895883 + Tigger2 DNA MER2_type 2461 2718 0 360 0 0 0 chr3 185629745 185629785 -41894793 + (CA)n Simple_repeat Simple_repeat 2 41 0 277 324 9 48 chr3 185629927 185630032 -41894546 - MIR SINE MIR -148 114 14 282 321 96 43 chr3 185630807 185630994 -41893584 - MIR SINE MIR -1 261 65 310 294 14 63 chr3 185633702 185633845 -41890733 - HAL1b LINE L1 -460 888 753 21 36 0 0 chr3 185635311 185635339 -41889239 + AT_rich Low_complexity Low_complexity 1 28 0 1847 278 87 35 chr3 185636519 185637359 -41887219 + L1MDa LINE L1 1132 1927 -4613 2994 119 71 4 chr3 185637359 185637838 -41886740 + MER9 LTR ERVK 1 511 0 1847 278 87 35 chr3 185637838 185637946 -41886632 + L1MDa LINE L1 1927 2028 -4512 1728 155 0 42 chr3 185637946 185638256 -41886322 + AluSx SINE Alu 1 297 -15 1847 278 87 35 chr3 185638256 185639496 -41885082 + L1MDa LINE L1 2028 3434 -3106 876 293 56 12 chr3 185639521 185640037 -41884541 + L1MDa LINE L1 3574 4112 -2428 1116 185 139 19 chr3 185640393 185640652 -41883926 + MER93b LTR ERV1 82 371 -2 21 82 0 0 chr3 185640885 185640934 -41883644 + AT_rich Low_complexity Low_complexity 1 49 0 574 147 40 33 chr3 185641059 185641209 -41883369 + L1MDa LINE L1 4669 4819 -1721 325 295 34 0 chr3 185641209 185641293 -41883285 - AluJ/FLAM SINE Alu -240 62 1 21 0 0 0 chr3 185642046 185642067 -41882511 + AT_rich Low_complexity Low_complexity 1 21 0 31 68 0 0 chr3 185642241 185642300 -41882278 + AT_rich Low_complexity Low_complexity 1 59 0 704 136 0 0 chr3 185642561 185642664 -41881914 + MER34 LTR ERV1 1 103 -439 17687 32 0 1 chr3 185642703 185645595 -41878983 - L1PA2 LINE L1 -1 6154 3264 6452 36 2 0 chr3 185645595 185646381 -41878197 + L1P LINE L1 1474 2261 -3885 21 57 0 0 chr3 185646660 185646695 -41877883 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 185647828 185647850 -41876728 + AT_rich Low_complexity Low_complexity 1 22 0 1058 222 77 50 chr3 185649414 185649752 -41874826 + MLT1A2 LTR MaLR 1 347 -27 433 224 80 8 chr3 185651404 185651529 -41873049 - L1MD2 LINE L1 -18 6341 6208 922 137 98 64 chr3 185651697 185651931 -41872647 + L1MA8 LINE L1 6046 6287 -4 2135 94 10 7 chr3 185651987 185652285 -41872293 - AluSc SINE Alu -9 300 2 24 32 0 0 chr3 185652304 185652335 -41872243 + AT_rich Low_complexity Low_complexity 1 31 0 1827 214 27 8 chr3 185653878 185653918 -41870660 - MLT2B1 LTR ERVL 0 520 482 510 17 0 0 chr3 185653918 185653977 -41870601 + (TCTA)n Simple_repeat Simple_repeat 3 61 0 1827 214 27 8 chr3 185653977 185654307 -41870271 - MLT2B1 LTR ERVL -38 482 143 1313 148 65 18 chr3 185654307 185654798 -41869780 + LTR60 LTR ERV1 1 586 0 399 240 25 108 chr3 185654651 185654855 -41869723 + TAR1 Satellite telomeric 44 230 -1881 * 729 237 6 18 chr3 185654927 185655096 -41869482 - MLT2B1 LTR ERVL -348 167 1 207 293 0 17 chr3 185655898 185655956 -41868622 + L2 LINE L2 3161 3217 -55 522 301 25 6 chr3 185656038 185656196 -41868382 + LTR33 LTR ERVL 5 165 -356 1525 219 94 13 chr3 185656196 185656738 -41867840 - LTR48B LTR ERV1 0 644 1 459 264 51 34 chr3 185656752 185656930 -41867648 + LTR33 LTR ERVL 190 370 -151 21 0 0 0 chr3 185656991 185657012 -41867566 + AT_rich Low_complexity Low_complexity 1 21 0 189 0 0 0 chr3 185658546 185658567 -41866011 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 563 236 240 24 chr3 185658730 185658938 -41865640 - MIR SINE MIR -3 259 7 1920 142 0 40 chr3 185659575 185659898 -41864680 - AluSx SINE Alu -2 310 1 411 336 69 30 chr3 185660063 185660325 -41864253 + L1ME LINE L1 5259 5530 -632 21 0 0 0 chr3 185660844 185660865 -41863713 + AT_rich Low_complexity Low_complexity 1 21 0 309 109 0 0 chr3 185661441 185661496 -41863082 + (TG)n Simple_repeat Simple_repeat 2 56 0 598 243 83 75 chr3 185661705 185662092 -41862486 + MLT1B LTR MaLR 1 390 0 501 311 58 11 chr3 185662284 185662474 -41862104 + MIR SINE MIR 63 261 -1 36 53 0 0 chr3 185662568 185662625 -41861953 + AT_rich Low_complexity Low_complexity 1 57 0 226 341 81 17 chr3 185662834 185663007 -41861571 + MIR SINE MIR 63 246 -16 252 213 0 0 chr3 185663149 185663196 -41861382 + MER112 DNA MER1_type 20 66 -194 284 284 0 10 chr3 185663331 185663433 -41861145 + (TA)n Simple_repeat Simple_repeat 2 102 0 842 271 94 39 chr3 185663657 185664092 -41860486 - MLT1H LTR MaLR 0 549 91 2170 167 82 0 chr3 185664731 185665120 -41859458 - MER34 LTR ERV1 -2 540 120 7696 20 1 0 chr3 185665127 185666056 -41858522 - L1P LINE L1 -2884 3262 2333 346 258 61 104 chr3 185866175 185866338 -41658240 + MIR SINE MIR 8 138 -70 9381 216 38 19 chr3 185868704 185870756 -41653822 - L1M1 LINE L1 -5376 2189 95 192 40 0 0 chr3 185870756 185870781 -41653797 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 9381 216 38 19 chr3 185870781 185870862 -41653716 - L1M1 LINE L1 -7470 95 17 982 228 65 71 chr3 185870974 185871298 -41653280 - MLT2D LTR ERVL -11 403 82 26 0 0 0 chr3 185873075 185873101 -41651477 + AT_rich Low_complexity Low_complexity 1 26 0 653 210 35 0 chr3 185873530 185873673 -41650905 + MLT1A1 LTR MaLR 1 148 -217 1200 221 54 110 chr3 185874870 185875405 -41649173 - MLT1D LTR MaLR 0 505 1 31 26 0 0 chr3 185876007 185876045 -41648533 + AT_rich Low_complexity Low_complexity 1 38 0 21 57 0 0 chr3 185876119 185876154 -41648424 + AT_rich Low_complexity Low_complexity 1 35 0 285 98 0 0 chr3 185877687 185877728 -41646850 + (CA)n Simple_repeat Simple_repeat 2 42 0 8832 124 77 21 chr3 185878841 185880446 -41644132 - pTR5 LTR ERV1 0 2438 743 29 47 0 0 chr3 185882343 185882386 -41642192 + AT_rich Low_complexity Low_complexity 1 43 0 364 330 9 0 chr3 185882569 185882684 -41641894 + L2 LINE L2 3193 3308 -5 220 347 27 27 chr3 185883365 185883515 -41641063 - L2 LINE L2 -1 3312 3163 210 204 19 74 chr3 185884484 185884538 -41640040 - L2 LINE L2 -13 3300 3250 21 36 0 0 chr3 185884813 185884841 -41639737 + AT_rich Low_complexity Low_complexity 1 28 0 278 364 32 7 chr3 185885227 185885381 -41639197 - MIR SINE MIR -94 168 11 1294 146 25 104 chr3 185885452 185885498 -41639080 - L1MA3 LINE L1 -8 6297 6249 197 33 33 0 chr3 185885498 185885528 -41639050 + (TTTTA)n Simple_repeat Simple_repeat 2 32 0 1294 146 25 104 chr3 185885528 185885546 -41639032 - L1MA3 LINE L1 -56 6249 6231 1293 31 0 6 chr3 185885546 185885740 -41638838 - L1PA2 LINE L1 0 6155 5998 1294 146 25 104 chr3 185885740 185885881 -41638697 - L1MA3 LINE L1 -74 6231 6128 3870 51 38 0 chr3 185885881 185886353 -41638225 - LTR2B LTR ERV1 0 490 1 1294 146 25 104 chr3 185886353 185886501 -41638077 - L1MA3 LINE L1 -177 6128 5970 6424 113 184 81 chr3 185886503 185888041 -41636537 - pTR5 LTR ERV1 0 2438 743 381 264 64 9 chr3 185888072 185888182 -41636396 + L2 LINE L2 3197 3312 -1 33 73 0 0 chr3 185888447 185888515 -41636063 + AT_rich Low_complexity Low_complexity 1 68 0 2906 94 25 25 chr3 185889426 185889874 -41634704 + LTR7 LTR ERV1 1 448 -2 13988 107 24 32 chr3 185889877 185892775 -41631803 + HERVH LTR ERV1 1 2995 -4718 2905 133 8 0 chr3 185892754 185893236 -41631342 + HERVH LTR ERV1 3140 3625 -4088 * 1315 246 112 9 chr3 185894465 185894895 -41629683 + MER34 LTR ERV1 27 500 -42 306 269 64 35 chr3 185894967 185895108 -41629470 + L1MCa LINE L1 1775 1919 -4507 1705 141 28 83 chr3 185895316 185895643 -41628935 + AluSc SINE Alu 1 309 0 24 0 0 0 chr3 185895759 185895783 -41628795 + AT_rich Low_complexity Low_complexity 1 24 0 1962 117 37 0 chr3 185895955 185896075 -41628503 + AluSg SINE Alu 1 115 -195 326 23 23 0 chr3 185896075 185896118 -41628460 + (CAA)n Simple_repeat Simple_repeat 2 45 0 1962 117 37 0 chr3 185896118 185896295 -41628283 + AluSg SINE Alu 115 309 -1 317 242 80 17 chr3 185897041 185897175 -41627403 + MLT1J2 LTR MaLR 58 202 -207 2051 119 3 13 chr3 185897987 185898297 -41626281 - AluSx SINE Alu 0 312 6 34 84 0 0 chr3 185898317 185898400 -41626178 + AT_rich Low_complexity Low_complexity 1 83 0 2270 100 3 13 chr3 185898849 185899159 -41625419 - AluSp SINE Alu -6 307 1 22 0 0 0 chr3 185899248 185899270 -41625308 + AT_rich Low_complexity Low_complexity 1 22 0 28 0 0 0 chr3 185899759 185899787 -41624791 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr3 185900048 185900085 -41624493 + AT_rich Low_complexity Low_complexity 1 37 0 1938 226 33 66 chr3 185900568 185901219 -41623359 - MLT1E3 LTR MaLR 0 586 3 905 193 0 44 chr3 185901304 185901485 -41623093 - FRAM SINE Alu -6 170 1 2491 62 0 0 chr3 185901502 185901793 -41622785 + AluY SINE Alu 6 296 -15 446 290 98 42 chr3 185902001 185902169 -41622409 + LTR33 LTR ERVL 1 185 -336 2455 158 29 2 chr3 185902169 185902580 -41621998 - MSTB LTR MaLR -4 422 1 446 290 98 42 chr3 185902580 185902625 -41621953 + LTR33 LTR ERVL 185 226 -295 300 285 100 50 chr3 185902656 185902856 -41621722 + LTR33 LTR ERVL 292 501 -20 268 118 119 0 chr3 185902931 185903003 -41621575 - MLT2A2 LTR ERVL 0 444 390 260 259 18 18 chr3 185903003 185903115 -41621463 + (TA)n Simple_repeat Simple_repeat 2 113 0 751 98 66 0 chr3 185903123 185903245 -41621333 - MLT2A2 LTR ERVL -40 413 284 23406 91 5 7 chr3 185903245 185903272 -41621306 - HERVL-A2 LTR ERVL -2354 3300 3274 2282 107 3 0 chr3 185903272 185903580 -41620998 + AluY SINE Alu 1 309 -2 23406 91 5 7 chr3 185903580 185906857 -41617721 - HERVL-A2 LTR ERVL -2380 3274 2 327 107 0 18 chr3 185906858 185906914 -41617664 - MLT2A2 LTR ERVL 0 453 399 260 207 6 34 chr3 185906967 185907146 -41617432 + (TA)n Simple_repeat Simple_repeat 2 175 0 2717 105 37 0 chr3 185907176 185907577 -41617001 - MLT2A2 LTR ERVL -37 416 1 4756 128 264 85 chr3 185907675 185909116 -41615462 + pTR5 LTR ERV1 740 2438 0 32 43 0 0 chr3 185909670 185909716 -41614862 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr3 185911113 185911136 -41613442 + AT_rich Low_complexity Low_complexity 1 23 0 2564 169 34 8 chr3 185911387 185911861 -41612717 - MER66B LTR ERV1 0 486 1 325 289 23 55 chr3 185911984 185912112 -41612466 + L2 LINE L2 3190 3313 0 25 0 0 0 chr3 185912314 185912339 -41612239 + AT_rich Low_complexity Low_complexity 1 25 0 1942 120 3 31 chr3 185912561 185912853 -41611725 + AluSg SINE Alu 17 300 -10 41 36 0 0 chr3 185913687 185913742 -41610836 + AT_rich Low_complexity Low_complexity 1 55 0 2207 130 3 46 chr3 185914259 185914628 -41609950 + THE1A LTR MaLR 1 353 -2 11180 108 13 1 chr3 185914630 185916191 -41608387 + THE1A-int LTR MaLR 1 1580 0 2218 91 33 58 chr3 185916191 185916555 -41608023 + THE1A LTR MaLR 1 355 0 183 42 0 0 chr3 185917604 185917628 -41606950 + (TTG)n Simple_repeat Simple_repeat 1 24 0 1266 173 134 32 chr3 185917876 185918153 -41606425 + AluJo SINE Alu 1 305 -7 1590 152 3 79 chr3 185918702 185919060 -41605518 - AluSg SINE Alu 0 335 1 745 266 122 30 chr3 185919829 185920363 -41604215 + L1MC4 LINE L1 7280 7862 -180 353 280 130 38 chr3 185920706 185920967 -41603611 + L1ME LINE L1 1206 1490 -5144 379 251 108 72 chr3 185920972 185921444 -41603134 + L1ME LINE L1 1436 2091 -4673 22 0 0 0 chr3 185921470 185921492 -41603086 + AT_rich Low_complexity Low_complexity 1 22 0 1197 237 63 84 chr3 185923082 185923633 -41600945 + MER34 LTR ERV1 1 521 -21 208 187 53 40 chr3 185924006 185924081 -41600497 + A-rich Low_complexity Low_complexity 3 78 0 192 40 0 0 chr3 185925186 185925211 -41599367 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 26 30 0 0 chr3 185925602 185925635 -41598943 + AT_rich Low_complexity Low_complexity 1 33 0 1285 214 50 8 chr3 185925709 185925971 -41598607 - AluJo SINE Alu -30 282 10 459 324 65 41 chr3 185926308 185926601 -41597977 - MER110-int LTR ERV1 -3916 731 432 2055 106 7 3 chr3 185927663 185927946 -41596632 + AluSc SINE Alu 9 292 -17 2387 138 3 11 chr3 185928379 185928750 -41595828 + THE1C LTR MaLR 1 368 -7 1704 273 80 24 chr3 185929160 185929701 -41594877 + MER77 LTR ERV1 50 601 -4 2376 172 16 9 chr3 185929983 185930424 -41594154 - MER31A LTR ERV1 -9 476 33 264 30 0 0 chr3 185930436 185930469 -41594109 + (TG)n Simple_repeat Simple_repeat 2 34 0 22 0 0 0 chr3 185930733 185930755 -41593823 + AT_rich Low_complexity Low_complexity 1 22 0 324 282 40 79 chr3 185930947 185931149 -41593429 + LTR68 LTR ERV1 243 436 -304 1249 150 17 9 chr3 185931471 185931704 -41592874 - L1PA14 LINE L1 -780 5366 5132 * 4936 97 9 23 chr3 185931700 185932452 -41592126 + L1PA14 LINE L1 5368 6109 -52 515 191 73 83 chr3 185932452 185932656 -41591922 - LTR8A LTR ERV1 -181 546 345 1519 183 71 9 chr3 185932657 185932980 -41591598 + MER61A LTR ERV1 1 343 0 2086 190 99 41 chr3 185933048 185933675 -41590903 + HUERS-P3b LTR ERV1 81 777 -4440 284 93 0 0 chr3 185933668 185933711 -41590867 + HUERS-P3b LTR ERV1 1320 1362 -3855 * 21458 115 15 13 chr3 185933710 185934506 -41590072 + HUERS-P3b LTR ERV1 1006 1800 -3417 4985 109 34 17 chr3 185934506 185935273 -41589305 - LTR17 LTR ERV1 0 780 1 21458 115 15 13 chr3 185935273 185937870 -41586708 + HUERS-P3b LTR ERV1 1800 4825 -392 1833 107 22 0 chr3 185937849 185938121 -41586457 + HUERS-P3b LTR ERV1 4936 5213 -4 * 1953 133 30 12 chr3 185938125 185938462 -41586116 + MER61A LTR ERV1 1 343 0 889 218 77 121 chr3 185938462 185938825 -41585753 - LTR8 LTR ERV1 -380 347 1 384 226 78 0 chr3 185938848 185939002 -41585576 - L1MDa LINE L1 -3890 2650 2525 * 6040 256 63 39 chr3 185938995 185941030 -41583548 - L1MDa LINE L1 -4437 2103 21 25 51 0 0 chr3 185943267 185943306 -41581272 + AT_rich Low_complexity Low_complexity 1 39 0 395 221 11 0 chr3 185943653 185943748 -41580830 - L1MD3 LINE L1 -8 7987 7892 2280 88 6 22 chr3 185945037 185945355 -41579223 + AluSq SINE Alu 1 313 0 673 252 65 14 chr3 185945558 185945772 -41578806 - MER93a LTR ERV1 -117 285 61 286 342 57 6 chr3 185945871 185946029 -41578549 - MIR SINE MIR -94 168 3 1004 325 61 11 chr3 185947674 185948201 -41576377 - MLT1H1 LTR MaLR -2 553 1 350 309 137 23 chr3 185948201 185948371 -41576207 - L1MC/D LINE L1 -2078 5730 5541 295 313 12 0 chr3 185948574 185948657 -41575921 + MIR3 SINE MIR 124 207 -1 21 0 0 0 chr3 185949434 185949455 -41575123 + AT_rich Low_complexity Low_complexity 1 21 0 261 313 95 58 chr3 185950314 185950540 -41574038 - MIR3 SINE MIR -12 250 2 * 292 371 88 37 chr3 185950519 185950791 -41573787 - L2 LINE L2 0 3272 2987 24 53 0 0 chr3 185950996 185951034 -41573544 + AT_rich Low_complexity Low_complexity 1 38 0 304 277 18 27 chr3 185951066 185951178 -41573400 - L1ME4a LINE L1 -72 6049 5939 31 44 0 0 chr3 185951653 185951698 -41572880 + AT_rich Low_complexity Low_complexity 1 45 0 23 0 0 0 chr3 185951831 185951854 -41572724 + AT_rich Low_complexity Low_complexity 1 23 0 2889 296 141 67 chr3 185951873 185952694 -41571884 + L2 LINE L2 309 1067 -2247 297 0 0 0 chr3 185952694 185952727 -41571851 + (CA)n Simple_repeat Simple_repeat 2 34 0 2568 124 3 0 chr3 185952727 185953098 -41571480 - THE1C LTR MaLR -3 372 1 2889 296 141 67 chr3 185953098 185954751 -41569827 + L2 LINE L2 1066 2968 -346 631 227 44 39 chr3 185954826 185955282 -41569296 - L1MB7 LINE L1 -62 6122 5567 1060 201 51 8 chr3 185955297 185955551 -41569027 + L1M4 LINE L1 5264 5528 -646 668 236 0 45 chr3 185955719 185955766 -41568812 - MLT2C1 LTR ERVL 0 397 349 330 67 0 0 chr3 185955766 185955811 -41568767 + (CA)n Simple_repeat Simple_repeat 1 45 0 668 236 0 45 chr3 185955811 185955941 -41568637 - MLT2C1 LTR ERVL -48 349 228 480 248 16 8 chr3 185955944 185956069 -41568509 - MLT2C2 LTR ERVL -338 126 1 396 233 100 67 chr3 185956087 185956237 -41568341 + L2 LINE L2 3158 3312 -1 284 178 14 0 chr3 185957119 185957192 -41567386 + (TA)n Simple_repeat Simple_repeat 1 74 0 22 35 0 0 chr3 185957721 185957750 -41566828 + AT_rich Low_complexity Low_complexity 1 29 0 192 228 0 0 chr3 185957808 185957865 -41566713 + (TA)n Simple_repeat Simple_repeat 1 57 0 287 366 27 18 chr3 185958488 185958600 -41565978 - MER5B DNA MER1_type -64 114 2 25 51 0 0 chr3 185958725 185958764 -41565814 + AT_rich Low_complexity Low_complexity 1 39 0 336 319 0 26 chr3 185959095 185959211 -41565367 - MER5B DNA MER1_type -50 128 16 1816 128 0 0 chr3 185959764 185960047 -41564531 - AluSc SINE Alu 0 309 36 36 0 0 0 chr3 185960860 185960896 -41563682 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr3 185960957 185960979 -41563599 + AT_rich Low_complexity Low_complexity 1 22 0 351 103 17 0 chr3 185961763 185961821 -41562757 - MSTA LTR MaLR -367 61 3 22 70 0 0 chr3 185961869 185961912 -41562666 + AT_rich Low_complexity Low_complexity 1 43 0 1850 166 26 20 chr3 185961975 185962319 -41562259 - MER7A DNA MER2_type -1 345 2 1936 105 7 0 chr3 185963176 185963471 -41561107 + HERVH LTR ERV1 3697 3993 -3720 3803 142 78 2 chr3 185963473 185964088 -41560490 + HERVH LTR ERV1 4488 5149 -2564 1356 109 0 67 chr3 185964085 185964324 -41560254 + HERVH LTR ERV1 5597 5819 -1894 * 2334 86 59 13 chr3 185964324 185964697 -41559881 + HERVH LTR ERV1 7324 7713 0 2360 82 143 22 chr3 185964697 185965097 -41559481 + LTR7 LTR ERV1 1 448 -2 258 260 47 71 chr3 185966348 185966371 -41558207 - MIR SINE MIR -119 143 121 1474 218 60 8 chr3 185966371 185966724 -41557854 + MLT1A2 LTR MaLR 4 374 0 258 260 47 71 chr3 185966724 185966827 -41557751 - MIR SINE MIR -141 121 20 2640 96 98 0 chr3 185969657 185970065 -41554513 - LTR7 LTR ERV1 -2 448 1 1377 117 12 17 chr3 185970065 185970402 -41554176 - HERVH LTR ERV1 0 7713 7322 1239 105 100 0 chr3 185970400 185970600 -41553978 - HERVH LTR ERV1 -1894 5819 5600 * 600 240 0 0 chr3 185970601 185970726 -41553852 - HERVH LTR ERV1 -2564 5149 5025 * 1256 121 0 32 chr3 185970709 185970899 -41553679 - HERVH LTR ERV1 -2878 4835 4652 * 20594 104 19 15 chr3 185970886 185974074 -41550504 - HERVH LTR ERV1 -3916 3797 596 644 38 0 0 chr3 185974209 185974289 -41550289 - L1PA7 LINE L1 -1 6153 6074 21 89 0 0 chr3 185974985 185975041 -41549537 + AT_rich Low_complexity Low_complexity 1 56 0 295 312 93 4 chr3 185975565 185975834 -41548744 + L1ME2 LINE L1 4224 4516 -1630 2483 274 41 24 chr3 185975967 185977031 -41547547 + L1ME2 LINE L1 5063 6149 -15 310 254 74 62 chr3 185977060 185977304 -41547274 + L1MEd LINE L1 971 1217 -4902 1412 73 0 16 chr3 185977318 185977509 -41547069 - L1PA8A LINE L1 -585 5546 5359 3363 115 27 2 chr3 185977859 185978211 -41546367 - L1PB1 LINE L1 -1 6150 5779 180 111 0 0 chr3 185978211 185978238 -41546340 + (TG)n Simple_repeat Simple_repeat 2 28 0 3363 115 27 2 chr3 185978238 185978399 -41546179 - L1PB1 LINE L1 -372 5779 5624 2998 106 18 4 chr3 185978399 185978842 -41545736 - L1PBa LINE L1 -5014 1849 1398 743 243 109 70 chr3 185978874 185979286 -41545292 + LTR7 LTR ERV1 23 450 0 521 138 58 0 chr3 185979286 185979373 -41545205 - L1PBa LINE L1 -5461 1402 1311 2380 124 49 5 chr3 185979384 185979772 -41544806 - L1PBa LINE L1 -5709 1154 750 419 259 72 62 chr3 185979758 185979951 -41544627 + L1M4 LINE L1 3968 4162 -1984 * 986 167 23 79 chr3 185980383 185980598 -41543980 + AluJo SINE Alu 3 205 -107 290 304 10 49 chr3 185981291 185981393 -41543185 - L2 LINE L2 -1 3271 3174 225 329 73 0 chr3 185981912 185981994 -41542584 - L2 LINE L2 -37 3276 3189 349 270 23 86 chr3 185982161 185982335 -41542243 - MIR SINE MIR -47 215 53 240 263 0 0 chr3 185982549 185982629 -41541949 + T-rich Low_complexity Low_complexity 1 80 0 1185 235 117 69 chr3 185982869 185983491 -41541087 + MLT1E1 LTR MaLR 1 652 -2 29 28 0 0 chr3 185985486 185985522 -41539056 + AT_rich Low_complexity Low_complexity 1 36 0 196 365 16 0 chr3 185985556 185985619 -41538959 + MIR SINE MIR 28 91 -117 26 30 0 0 chr3 185985953 185985986 -41538592 + AT_rich Low_complexity Low_complexity 1 33 0 22 35 0 0 chr3 185986376 185986405 -41538173 + AT_rich Low_complexity Low_complexity 1 29 0 738 160 0 8 chr3 185986431 185986550 -41538028 - AluJb SINE Alu -190 122 5 205 220 17 85 chr3 185986757 185986816 -41537762 - MIR SINE MIR -144 118 64 288 154 0 0 chr3 185987115 185987167 -41537411 + (CA)n Simple_repeat Simple_repeat 2 53 0 256 98 0 39 chr3 185988251 185988302 -41536276 + (TTTC)n Simple_repeat Simple_repeat 4 52 0 1758 145 0 7 chr3 185988305 185988574 -41536004 - AluSx SINE Alu -45 267 1 347 305 179 7 chr3 185988611 185988762 -41535816 + MER5B DNA MER1_type 2 178 0 272 306 37 37 chr3 185988812 185988946 -41535632 + L2 LINE L2 3180 3313 0 480 313 53 60 chr3 185989905 185990337 -41534241 - Charlie8 DNA MER1_type -1949 468 40 25 0 0 0 chr3 185990397 185990422 -41534156 + AT_rich Low_complexity Low_complexity 1 25 0 189 0 0 0 chr3 185991021 185991042 -41533536 + (CA)n Simple_repeat Simple_repeat 2 22 0 235 231 0 15 chr3 185991378 185991443 -41533135 + CT-rich Low_complexity Low_complexity 3 66 0 13260 183 27 18 chr3 185991476 185992542 -41532036 - L1MA3 LINE L1 0 7724 6669 1870 140 63 26 chr3 185992542 185992891 -41531687 - THE1B LTR MaLR -2 362 1 13260 183 27 18 chr3 185992891 185993773 -41530805 - L1MA3 LINE L1 -1055 6669 5796 1551 197 7 3 chr3 185993773 185994068 -41530510 - AluJo SINE Alu -16 296 1 13260 183 27 18 chr3 185994068 185996401 -41528177 - L1MA3 LINE L1 -1928 5796 3393 315 0 0 0 chr3 185996401 185996436 -41528142 + (TG)n Simple_repeat Simple_repeat 2 36 0 13260 183 27 18 chr3 185996436 185996878 -41527700 - L1MA3 LINE L1 -4331 3393 2956 22 35 0 0 chr3 185997381 185997410 -41527168 + AT_rich Low_complexity Low_complexity 1 29 0 1813 128 11 0 chr3 185997450 185997716 -41526862 + AluSx SINE Alu 17 285 -27 23 33 0 0 chr3 185998004 185998034 -41526544 + AT_rich Low_complexity Low_complexity 1 30 0 212 292 79 34 chr3 185998948 185999037 -41525541 - MIR SINE MIR 0 262 170 3491 144 44 68 chr3 185999162 185999868 -41524710 + LTR8 LTR ERV1 1 689 -2 1776 228 55 28 chr3 186000138 186000643 -41523935 + L1MD3 LINE L1 7459 7977 -18 471 18 0 0 chr3 186000647 186000703 -41523875 + (TA)n Simple_repeat Simple_repeat 2 57 0 1635 172 52 0 chr3 186000703 186000994 -41523584 - AluJb SINE Alu -6 306 1 29 0 0 0 chr3 186001001 186001030 -41523548 + AT_rich Low_complexity Low_complexity 1 29 0 226 300 14 0 chr3 186001086 186001156 -41523422 + L1MEd LINE L1 684 754 -5451 712 175 0 0 chr3 186001202 186001328 -41523250 + FLAM_C SINE Alu 9 134 -9 31 0 0 0 chr3 186001328 186001359 -41523219 + AT_rich Low_complexity Low_complexity 1 31 0 547 315 82 67 chr3 186001516 186002374 -41522204 + L1MEd LINE L1 895 1820 -4576 1422 209 43 0 chr3 186002415 186002692 -41521886 + AluJo SINE Alu 1 289 -23 22 35 0 0 chr3 186002731 186002760 -41521818 + AT_rich Low_complexity Low_complexity 1 29 0 300 296 108 20 chr3 186002861 186003456 -41521122 + L1MEd LINE L1 2038 2668 -3547 21 0 0 0 chr3 186003962 186003983 -41520595 + AT_rich Low_complexity Low_complexity 1 21 0 373 358 19 19 chr3 186004418 186004678 -41519900 - L1ME LINE L1 -415 5747 5488 2157 57 0 0 chr3 186005011 186005273 -41519305 + AluY SINE Alu 39 300 -11 242 309 57 0 chr3 186005277 186005400 -41519178 - L1ME LINE L1 -2211 3935 3806 317 277 44 44 chr3 186005421 186005627 -41518951 - HsTC2 DNA Tc2 0 1899 1694 433 265 83 0 chr3 186005678 186005810 -41518768 - HsTC2 DNA Tc2 -1416 482 340 618 231 140 0 chr3 186005819 186005962 -41518616 + Tigger3(Golem) DNA MER2_type 1 163 -2866 * 3905 159 87 17 chr3 186005956 186006259 -41518319 + Tigger3(Golem) DNA MER2_type 2163 2444 -584 2135 109 0 0 chr3 186006259 186006552 -41518026 + AluSx SINE Alu 18 310 -2 3905 159 87 17 chr3 186006552 186007057 -41517521 + Tigger3(Golem) DNA MER2_type 2444 3027 -1 5606 162 25 0 chr3 186007139 186008564 -41516014 - L1PA15 LINE L1 0 6165 4699 1089 267 93 9 chr3 186008724 186009258 -41515320 - Zaphod DNA AcHobo -1 4030 3542 3395 143 9 4 chr3 186009258 186009809 -41514769 - MER41A LTR ERV1 0 554 1 1089 267 93 9 chr3 186009809 186009976 -41514602 - Zaphod DNA AcHobo -489 3542 362 905 245 126 48 chr3 186009980 186010376 -41514202 - MLT1D LTR MaLR -4 501 75 863 347 40 14 chr3 186010404 186010750 -41513828 - Zaphod DNA AcHobo -3666 365 11 273 221 29 15 chr3 186010882 186010950 -41513628 + MLT1I LTR MaLR 30 98 -311 507 194 126 0 chr3 186010972 186011075 -41513503 + FLAM_C SINE Alu 1 116 -27 691 280 68 78 chr3 186011103 186011500 -41513078 - LTR40a LTR ERVL -7 512 120 237 122 24 24 chr3 186011610 186011651 -41512927 - LTR40a LTR ERVL -478 41 1 * 370 361 8 8 chr3 186011651 186011769 -41512809 + MLT1I LTR MaLR 90 207 -202 1531 196 119 0 chr3 186012022 186012349 -41512229 + MER47A DNA MER2_type 1 366 0 2249 219 56 38 chr3 186012465 186013551 -41511027 - LTR27 LTR ERV1 -2 1735 7 24 0 0 0 chr3 186013644 186013668 -41510910 + AT_rich Low_complexity Low_complexity 1 24 0 239 336 26 18 chr3 186014067 186014180 -41510398 - Charlie8 DNA MER1_type -2152 265 152 26 0 0 0 chr3 186014219 186014245 -41510333 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr3 186014469 186014496 -41510082 + AT_rich Low_complexity Low_complexity 1 27 0 206 286 0 0 chr3 186015588 186015644 -41508934 + MIR SINE MIR 183 238 -24 496 240 45 122 chr3 186015646 186015867 -41508711 + MER69 DNA AcHobo 141 344 -882 1315 266 57 81 chr3 186015868 186016534 -41508044 - MLT1E1 LTR MaLR 0 654 5 366 353 78 0 chr3 186016537 186016690 -41507888 + MER69 DNA AcHobo 340 504 -2022 817 237 249 2 chr3 186016704 186017130 -41507448 + MER69 DNA AcHobo 1984 2514 -12 32 26 0 0 chr3 186017236 186017275 -41507303 + AT_rich Low_complexity Low_complexity 1 39 0 970 187 15 76 chr3 186017460 186017722 -41506856 + MER4A LTR ERV1 1 246 -418 478 320 57 65 chr3 186018878 186019475 -41505103 + MER4A-int LTR ERV1 2266 2857 -1790 28 0 0 0 chr3 186019870 186019898 -41504680 + AT_rich Low_complexity Low_complexity 1 28 0 1001 288 73 57 chr3 186020215 186020868 -41503710 + MER4A-int LTR ERV1 6012 6675 -447 562 246 69 54 chr3 186021214 186021417 -41503161 + MER4A-int LTR ERV1 6379 6584 -14 1663 175 84 139 chr3 186021434 186022140 -41502438 + MER4A LTR ERV1 1 872 0 24 53 0 0 chr3 186022538 186022576 -41502002 + AT_rich Low_complexity Low_complexity 1 38 0 275 196 0 0 chr3 186022615 186022671 -41501907 - Alu SINE Alu 0 301 246 22 70 0 0 chr3 186022863 186022906 -41501672 + AT_rich Low_complexity Low_complexity 1 43 0 313 194 85 8 chr3 186022985 186023130 -41501448 + MER53 DNA DNA 3 189 0 31 26 0 0 chr3 186023858 186023896 -41500682 + AT_rich Low_complexity Low_complexity 1 38 0 456 265 49 6 chr3 186024362 186024524 -41500054 - LTR65 LTR ERV1 -500 169 1 330 214 145 10 chr3 186027169 186027308 -41497270 - MLT1H1 LTR MaLR 0 555 390 3720 241 87 32 chr3 186027467 186029696 -41494882 + L1MB3 LINE L1 3383 5803 -380 324 0 0 0 chr3 186029696 186029732 -41494846 + (TG)n Simple_repeat Simple_repeat 2 37 0 3720 241 87 32 chr3 186029732 186030134 -41494444 + L1MB3 LINE L1 5803 6181 -2 1076 149 60 5 chr3 186030642 186030843 -41493735 + L1MB3 LINE L1 5829 6040 -143 188 341 32 100 chr3 186031267 186031578 -41493000 + L2 LINE L2 2605 2894 -420 930 198 16 16 chr3 186031755 186031937 -41492641 + MER5A DNA MER1_type 1 182 -7 2368 194 55 72 chr3 186031939 186032702 -41491876 - THE1C-int LTR MaLR -830 750 1 2096 163 5 13 chr3 186032702 186033077 -41491501 - THE1C LTR MaLR 0 375 4 223 313 15 92 chr3 186033166 186033297 -41491281 + MER5A DNA MER1_type 63 183 -6 25 51 0 0 chr3 186034009 186034048 -41490530 + AT_rich Low_complexity Low_complexity 1 39 0 652 238 27 22 chr3 186034826 186035011 -41489567 - MER5A DNA MER1_type -1 188 3 880 162 0 0 chr3 186036346 186036517 -41488061 + AluSg/x SINE Alu 138 308 0 35 63 0 0 chr3 186037058 186037121 -41487457 + AT_rich Low_complexity Low_complexity 1 63 0 363 292 49 71 chr3 186037182 186037449 -41487129 - L1M4 LINE L1 -1308 4838 4578 2261 121 0 6 chr3 186037471 186037784 -41486794 - AluSx SINE Alu 0 312 2 43 35 0 0 chr3 186038457 186038514 -41486064 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr3 186038570 186038592 -41485986 + AT_rich Low_complexity Low_complexity 1 22 0 371 277 5 99 chr3 186039457 186039659 -41484919 + L2 LINE L2 3113 3295 -18 3861 139 19 8 chr3 186040059 186040685 -41483893 - Tigger1 DNA MER2_type -133 2285 1653 3047 138 36 2 chr3 186040667 186041167 -41483411 - Tigger1 DNA MER2_type -965 1453 937 * 324 299 82 31 chr3 186041260 186041554 -41483024 - L1M4 LINE L1 -1643 4503 4195 21 71 0 0 chr3 186041710 186041752 -41482826 + AT_rich Low_complexity Low_complexity 1 42 0 1038 118 19 0 chr3 186041823 186041984 -41482594 + L1PA10 LINE L1 6005 6168 0 278 216 14 27 chr3 186042199 186042273 -41482305 + MIR SINE MIR 125 197 -65 4408 189 15 51 chr3 186042308 186043332 -41481246 + L1MA9 LINE L1 5326 6312 0 585 245 13 40 chr3 186043555 186043706 -41480872 + MER58A DNA MER1_type 1 147 0 342 346 110 18 chr3 186044694 186044922 -41479656 + MIR SINE MIR 13 261 -1 474 350 153 8 chr3 186045289 186045649 -41478929 + L3b LINE CR1 1116 1527 -56 419 299 182 62 chr3 186046079 186046190 -41478388 + L1MC4a LINE L1 6480 6576 -1232 261 0 0 0 chr3 186046190 186046219 -41478359 + (TG)n Simple_repeat Simple_repeat 2 30 0 419 299 182 62 chr3 186046219 186046415 -41478163 + L1MC4a LINE L1 6576 6824 -984 1111 228 116 10 chr3 186046415 186046726 -41477852 + MER2 DNA MER2_type 1 344 0 2084 233 106 40 chr3 186046726 186047520 -41477058 + Charlie1 DNA MER1_type 1908 2753 -8 4922 207 101 3 chr3 186047640 186049818 -41474760 - L1MA4 LINE L1 0 6300 3896 255 299 52 126 chr3 186050000 186050405 -41474173 + L2 LINE L2 2564 2937 -376 231 306 22 77 chr3 186050529 186050712 -41473866 + L2 LINE L2 3131 3303 -10 596 286 51 0 chr3 186051008 186051204 -41473374 - MER3 DNA MER1_type -3 206 1 260 276 8 77 chr3 186051525 186051643 -41472935 - MLT1G3 LTR MaLR -284 311 127 183 167 24 24 chr3 186051843 186051885 -41472693 - L3 LINE CR1 -7 1570 1529 1223 228 38 35 chr3 186051885 186052258 -41472320 - MLT1A2 LTR MaLR 0 374 1 21 57 0 0 chr3 186053408 186053443 -41471135 + AT_rich Low_complexity Low_complexity 1 35 0 997 33 0 0 chr3 186054419 186054541 -41470037 + L1PA4 LINE L1 6028 6149 -6 180 338 128 14 chr3 186055748 186055896 -41468682 + MIR SINE MIR 97 261 -1 1230 204 67 35 chr3 186056108 186056392 -41468186 - AluJo SINE Alu -9 303 11 31 58 0 0 chr3 186056463 186056515 -41468063 + AT_rich Low_complexity Low_complexity 1 52 0 2221 84 6 44 chr3 186057457 186057778 -41466800 + AluSq SINE Alu 5 313 0 368 258 215 21 chr3 186058126 186058321 -41466257 - MLT1D LTR MaLR -24 481 218 22 43 0 21 chr3 186058696 186058722 -41465856 + AT_rich Low_complexity Low_complexity 1 27 -19 2799 33 3 0 chr3 186058722 186059059 -41465519 + L1PA4 LINE L1 5815 6152 -3 22 43 0 21 chr3 186059059 186059079 -41465499 + AT_rich Low_complexity Low_complexity 27 46 0 2308 160 12 2 chr3 186059080 186059492 -41465086 + L1MA4 LINE L1 5445 5860 -440 341 281 35 9 chr3 186059499 186059613 -41464965 + MLT1C LTR MaLR 351 467 0 1560 226 17 49 chr3 186059684 186059819 -41464759 + L1MA4 LINE L1 5844 5982 -318 1950 126 7 14 chr3 186059819 186060112 -41464466 + AluSx SINE Alu 1 291 -21 1560 226 17 49 chr3 186060112 186060444 -41464134 + L1MA4 LINE L1 5982 6296 -4 28 22 0 22 chr3 186060630 186060646 -41463932 + AT_rich Low_complexity Low_complexity 1 16 -29 1449 191 134 34 chr3 186060646 186061033 -41463545 - MSTB LTR MaLR 0 426 1 28 22 0 22 chr3 186061033 186061062 -41463516 + AT_rich Low_complexity Low_complexity 16 45 0 32 43 0 0 chr3 186062266 186062312 -41462266 + AT_rich Low_complexity Low_complexity 1 46 0 344 315 79 48 chr3 186062733 186062898 -41461680 - MIR SINE MIR -19 243 74 690 337 73 32 chr3 186062908 186063412 -41461166 + L1ME LINE L1 8 532 -5538 332 289 56 47 chr3 186063861 186064183 -41460395 + L1ME LINE L1 720 1044 -5038 1574 251 15 79 chr3 186064228 186064761 -41459817 + LTR40a LTR ERVL 21 519 0 254 224 17 0 chr3 186064790 186064848 -41459730 + GA-rich Low_complexity Low_complexity 1 59 0 189 384 30 20 chr3 186065019 186065118 -41459460 + L3 LINE CR1 1386 1485 -92 180 324 14 27 chr3 186065176 186065250 -41459328 + MIR3 SINE MIR 125 197 -11 319 104 0 0 chr3 186065367 186065415 -41459163 - L1MB1 LINE L1 -27 6162 6115 * 1540 191 52 30 chr3 186065412 186065774 -41458804 - L1MA9 LINE L1 0 6312 5943 729 163 19 25 chr3 186065802 186065962 -41458616 + L1MA10 LINE L1 6176 6334 0 303 28 0 0 chr3 186067042 186067078 -41457500 + (CA)n Simple_repeat Simple_repeat 2 37 0 34 65 0 0 chr3 186067131 186067193 -41457385 + AT_rich Low_complexity Low_complexity 1 62 0 402 292 98 72 chr3 186067422 186067523 -41457055 - L2 LINE L2 -6 3307 3210 4438 126 21 39 chr3 186067523 186068316 -41456262 + MER4E LTR ERV1 1 779 0 402 292 98 72 chr3 186068316 186068519 -41456059 - L2 LINE L2 -103 3210 2995 1802 317 86 24 chr3 186068623 186069606 -41454972 - L2 LINE L2 -456 2858 1816 224 406 35 0 chr3 186069854 186069997 -41454581 - MER5B DNA MER1_type -27 151 4 23 0 0 0 chr3 186070435 186070458 -41454120 + AT_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr3 186070696 186070721 -41453857 + AT_rich Low_complexity Low_complexity 1 25 0 234 62 0 0 chr3 186071593 186071625 -41452953 + (GA)n Simple_repeat Simple_repeat 2 33 0 22 70 0 0 chr3 186071817 186071860 -41452718 + AT_rich Low_complexity Low_complexity 1 43 0 1880 173 3 0 chr3 186071970 186072277 -41452301 - AluSx SINE Alu -4 308 1 7612 218 21 33 chr3 186072351 186072577 -41452001 + L1M1 LINE L1 676 903 -6662 2218 123 7 0 chr3 186072577 186072886 -41451692 - AluSx SINE Alu -1 311 1 7612 218 21 33 chr3 186072886 186074366 -41450212 + L1M1 LINE L1 903 2287 -5278 1872 202 40 0 chr3 186074630 186075007 -41449571 + MSTD LTR MaLR 1 392 -4 1404 207 20 3 chr3 186075014 186075319 -41449259 + MSTD-int LTR MaLR 4 313 -1422 774 247 98 62 chr3 186075325 186075713 -41448865 + MER50 LTR ERV1 10 411 -323 1064 205 8 61 chr3 186075743 186075823 -41448755 + MER50 LTR ERV1 486 569 -165 4860 33 0 0 chr3 186075823 186076399 -41448179 - L1PA3 LINE L1 -3 6152 5577 1064 205 8 61 chr3 186076399 186076581 -41447997 + MER50 LTR ERV1 569 734 0 4234 256 93 30 chr3 186076585 186077895 -41446683 + MSTD-int LTR MaLR 314 1706 -29 1543 226 52 18 chr3 186077911 186078292 -41446286 + MSTD LTR MaLR 1 394 -2 275 294 0 0 chr3 186078310 186078378 -41446200 - Tigger7 DNA MER2_type -10 2577 2510 * 1360 265 0 0 chr3 186078374 186078668 -41445910 - Tigger7 DNA MER2_type -2193 294 1 1428 219 28 3 chr3 186079027 186079352 -41445226 - MER34C LTR ERV1 0 585 253 4338 181 27 10 chr3 186079353 186080174 -41444404 + L1PB3 LINE L1 111 945 -5259 275 125 0 0 chr3 186080201 186080241 -41444337 - MLT2A1 LTR ERVL 0 444 405 1799 222 35 67 chr3 186080321 186080829 -41443749 - MLT2B3 LTR ERVL -62 492 1 2341 194 23 40 chr3 186080832 186081017 -41443561 + L1PB3 LINE L1 956 1143 -5061 2269 74 3 0 chr3 186081017 186081346 -41443232 - AluSq SINE Alu 0 330 1 2341 194 23 40 chr3 186081346 186081833 -41442745 + L1PB3 LINE L1 1143 1612 -4592 917 147 76 0 chr3 186081865 186082022 -41442556 - L1PBb LINE L1 -5792 412 244 8179 242 83 29 chr3 186082096 186084653 -41439925 + L1PB3 LINE L1 1672 4570 -1641 186 103 0 0 chr3 186084653 186084682 -41439896 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 8179 242 83 29 chr3 186084682 186086412 -41438166 + L1PB3 LINE L1 4570 6204 -7 1711 189 62 41 chr3 186086469 186086856 -41437722 + LTR39 LTR ERV1 1 395 -388 1138 256 16 0 chr3 186086849 186087103 -41437475 + LTR39 LTR ERV1 526 783 0 * 22 0 0 0 chr3 186088666 186088688 -41435890 + AT_rich Low_complexity Low_complexity 1 22 0 1494 192 72 26 chr3 186089091 186089247 -41435331 - MLT1A1 LTR MaLR 0 365 218 3152 178 101 2 chr3 186089247 186089888 -41434690 - MER39 LTR ERV1 -2 705 1 1494 192 72 26 chr3 186089888 186090080 -41434498 - MLT1A1 LTR MaLR -147 218 1 26 0 0 0 chr3 186090311 186090337 -41434241 + AT_rich Low_complexity Low_complexity 1 26 0 35 54 0 0 chr3 186090688 186090744 -41433834 + AT_rich Low_complexity Low_complexity 1 56 0 2068 139 0 9 chr3 186090822 186091138 -41433440 + AluSq SINE Alu 1 313 0 1462 305 75 55 chr3 186091345 186092149 -41432429 - ERVL LTR ERVL -335 5429 4610 1701 231 65 45 chr3 186092158 186092648 -41431930 + MLT2B1 LTR ERVL 1 500 -20 432 0 0 0 chr3 186092661 186092709 -41431869 + (CA)n Simple_repeat Simple_repeat 1 48 0 767 303 83 73 chr3 186092752 186093283 -41431295 - ERVL LTR ERVL -1164 4600 4065 22 70 0 0 chr3 186093605 186093648 -41430930 + AT_rich Low_complexity Low_complexity 1 43 0 13518 56 6 0 chr3 186093950 186096497 -41428081 + L1PA5 LINE L1 3626 6154 0 469 314 53 10 chr3 186096650 186096857 -41427721 - ERVL LTR ERVL -1808 3956 3741 941 333 114 13 chr3 186096886 186097279 -41427299 - ERVL LTR ERVL -2093 3671 3239 24 0 0 0 chr3 186097728 186097752 -41426826 + AT_rich Low_complexity Low_complexity 1 24 0 1668 215 115 5 chr3 186097859 186098241 -41426337 - MSTB1 LTR MaLR -4 428 5 262 299 99 5 chr3 186098451 186098652 -41425926 - L1M4 LINE L1 -1036 5110 4891 1974 112 31 0 chr3 186098657 186098943 -41425635 + L1PA7 LINE L1 4 298 -6163 19036 112 5 2 chr3 186098943 186102654 -41421924 + L1PA7 LINE L1 2753 6466 -3 352 283 19 0 chr3 186103097 186103203 -41421375 - MIR SINE MIR -113 149 42 237 250 40 13 chr3 186103604 186103680 -41420898 - L3 LINE CR1 -578 999 922 2339 60 3 13 chr3 186103983 186104297 -41420281 + AluY SINE Alu 1 311 0 1567 210 52 62 chr3 186104589 186104728 -41419850 - MER65C LTR ERV1 0 461 322 1890 98 34 3 chr3 186104728 186105023 -41419555 + L1MA1 LINE L1 5993 6296 -6 1567 210 52 62 chr3 186105023 186105349 -41419229 - MER65C LTR ERV1 -139 322 1 22 0 0 0 chr3 186105404 186105426 -41419152 + AT_rich Low_complexity Low_complexity 1 22 0 270 309 105 32 chr3 186105776 186106061 -41418517 + HAL1 LINE L1 1346 1651 -856 288 364 33 0 chr3 186106328 186106449 -41418129 - MLT1I LTR MaLR -228 181 57 308 111 56 0 chr3 186106989 186107061 -41417517 + (TA)n Simple_repeat Simple_repeat 1 76 0 1213 182 28 20 chr3 186107203 186107450 -41417128 - MER34 LTR ERV1 0 542 294 22 70 0 0 chr3 186107651 186107694 -41416884 + AT_rich Low_complexity Low_complexity 1 43 0 208 237 34 0 chr3 186108257 186108316 -41416262 + (TTTA)n Simple_repeat Simple_repeat 1 61 0 390 85 0 0 chr3 186108711 186108770 -41415808 + (TG)n Simple_repeat Simple_repeat 2 60 0 3907 44 0 0 chr3 186109017 186109495 -41415083 - L1PA5 LINE L1 0 6154 5677 345 331 14 39 chr3 186109913 186110197 -41414381 - L1M4 LINE L1 -1487 4659 4383 34 65 0 0 chr3 186111184 186111246 -41413332 + AT_rich Low_complexity Low_complexity 1 62 0 309 109 0 0 chr3 186111973 186112002 -41412576 + (TG)n Simple_repeat Simple_repeat 1 75 0 309 109 0 0 chr3 186112002 186112048 -41412530 + (TG)n Simple_repeat Simple_repeat 1 46 0 1013 276 21 32 chr3 186112975 186113315 -41411263 - MLT1C LTR MaLR -7 460 125 22 0 0 0 chr3 186113462 186113484 -41411094 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 186113968 186113989 -41410589 + AT_rich Low_complexity Low_complexity 1 21 0 6608 74 6 8 chr3 186114208 186115626 -41408952 - L1PA7 LINE L1 -5 6149 4737 261 254 0 0 chr3 186115834 186115893 -41408685 + HERVL LTR ERVL 4680 4738 -916 1325 223 65 82 chr3 186116600 186117321 -41407257 + L1M4c LINE L1 862 1570 -4814 1361 176 3 46 chr3 186117358 186117674 -41406904 - MER61B LTR ERV1 -29 396 1 253 222 10 111 chr3 186117678 186117777 -41406801 + L1M4c LINE L1 1574 1662 -4722 25 31 0 0 chr3 186117954 186117986 -41406592 + AT_rich Low_complexity Low_complexity 1 32 0 303 273 42 42 chr3 186118576 186118741 -41405837 - HERVL40 LTR ERVL -2158 3372 3208 4081 126 102 35 chr3 186119786 186121096 -41403482 + pTR5 LTR ERV1 742 2438 0 45 55 0 0 chr3 186121250 186121323 -41403255 + AT_rich Low_complexity Low_complexity 1 73 0 32 0 0 0 chr3 186121339 186121371 -41403207 + AT_rich Low_complexity Low_complexity 1 32 0 1825 237 0 13 chr3 186121963 186122351 -41402227 - MLT1B LTR MaLR 0 390 8 279 0 0 0 chr3 186122984 186123015 -41401563 + (A)n Simple_repeat Simple_repeat 1 31 0 1174 250 63 3 chr3 186123015 186123299 -41401279 - MLT1A1 LTR MaLR -50 315 15 680 213 123 0 chr3 186123516 186123671 -41400907 - MSTD LTR MaLR 0 396 223 353 222 56 0 chr3 186123705 186123795 -41400783 - MSTD LTR MaLR -333 95 1 22 56 0 0 chr3 186125172 186125208 -41399370 + AT_rich Low_complexity Low_complexity 1 36 0 1991 169 17 48 chr3 186125724 186126139 -41398439 - MER65A LTR ERV1 -4 441 40 1641 189 133 13 chr3 186126150 186126532 -41398046 + MSTA LTR MaLR 1 428 0 1550 142 44 10 chr3 186126566 186126861 -41397717 - L1MA3 LINE L1 -1 6304 6000 5128 222 52 13 chr3 186126877 186128320 -41396258 - L1 LINE L1 -2192 3954 2453 201 74 0 0 chr3 186128320 186128347 -41396231 + (CA)n Simple_repeat Simple_repeat 2 28 0 520 209 99 29 chr3 186128416 186128588 -41395990 - MER65A-int LTR ERV1 -6391 1729 1546 6143 230 57 47 chr3 186128705 186131056 -41393522 - MER65A-int LTR ERV1 -2379 2492 71 1966 170 10 48 chr3 186131128 186131523 -41393055 - MER65A LTR ERV1 0 445 66 30 89 0 0 chr3 186131694 186131773 -41392805 + AT_rich Low_complexity Low_complexity 1 79 0 283 140 18 18 chr3 186132168 186132225 -41392353 + Charlie8 DNA MER1_type 73 129 -2288 1148 228 39 94 chr3 186132450 186132764 -41391814 - MLT1B LTR MaLR 0 390 103 1843 133 57 41 chr3 186132764 186133132 -41391446 + THE1C LTR MaLR 1 374 -1 1148 228 39 94 chr3 186133132 186133230 -41391348 - MLT1B LTR MaLR -287 103 1 877 308 47 58 chr3 186133362 186133893 -41390685 - L2 LINE L2 -9 3304 2767 253 323 32 16 chr3 186133990 186134114 -41390464 - HAL1b LINE L1 -831 517 392 36 40 0 0 chr3 186134145 186134195 -41390383 + AT_rich Low_complexity Low_complexity 1 50 0 32 43 0 0 chr3 186134230 186134276 -41390302 + AT_rich Low_complexity Low_complexity 1 46 0 207 0 0 0 chr3 186135470 186135493 -41389085 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 986 255 78 7 chr3 186135949 186136490 -41388088 - MER63 DNA MER1_type -44 1017 353 7722 22 0 0 chr3 186137098 186138753 -41385825 + L1PA3 LINE L1 4497 6152 -3 27 0 0 0 chr3 186138753 186138780 -41385798 + AT_rich Low_complexity Low_complexity 1 27 0 28 61 0 0 chr3 186139044 186139093 -41385485 + AT_rich Low_complexity Low_complexity 1 49 0 1789 136 13 45 chr3 186140615 186140924 -41383654 + AluJb SINE Alu 2 300 -12 862 204 71 0 chr3 186141041 186141252 -41383326 - L1MA6 LINE L1 -4 6296 6071 542 195 71 0 chr3 186141298 186141411 -41383167 - L1M2c LINE L1 -6665 124 4 257 333 0 38 chr3 186141817 186142000 -41382578 - L1M4 LINE L1 -2162 3984 3809 24 53 0 0 chr3 186142045 186142083 -41382495 + AT_rich Low_complexity Low_complexity 1 38 0 322 296 24 53 chr3 186142413 186142582 -41381996 + MLT1J LTR MaLR 348 511 0 1451 220 17 9 chr3 186142614 186142960 -41381618 + L1MA1 LINE L1 4832 5180 -966 4316 119 16 39 chr3 186142960 186143060 -41381518 + L1MA1 LINE L1 5572 5673 -629 213 65 0 0 chr3 186143060 186143091 -41381487 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 4316 119 16 39 chr3 186143091 186143732 -41380846 + L1MA1 LINE L1 5673 6302 0 1866 150 13 10 chr3 186144349 186144655 -41379923 - AluSx SINE Alu -5 307 1 3215 218 115 2 chr3 186145530 186146366 -41378212 - L1MA6 LINE L1 -75 6225 5296 398 206 84 15 chr3 186146370 186146501 -41378077 + L1MA7 LINE L1 6141 6280 -11 237 374 0 0 chr3 186146521 186146604 -41377974 - MIR SINE MIR -157 105 23 33 0 0 0 chr3 186147048 186147081 -41377497 + AT_rich Low_complexity Low_complexity 1 33 0 413 353 24 0 chr3 186147239 186147406 -41377172 + MIR SINE MIR 73 243 -19 802 217 105 50 chr3 186147554 186147992 -41376586 - MER34B LTR ERV1 -61 504 35 207 291 18 0 chr3 186147998 186148053 -41376525 - L2 LINE L2 -656 2658 2603 11721 172 39 18 chr3 186148629 186150990 -41373588 + Tigger1 DNA MER2_type 4 2414 -4 258 103 0 0 chr3 186151386 186151425 -41373153 - MER52A LTR ERV1 -1716 39 1 * 3551 197 78 46 chr3 186151425 186152364 -41372214 + MER52C LTR ERV1 309 1278 0 2258 96 3 0 chr3 186152509 186152810 -41371768 - AluY SINE Alu -9 302 1 27 29 0 0 chr3 186153040 186153074 -41371504 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr3 186154091 186154121 -41370457 + AT_rich Low_complexity Low_complexity 1 30 0 198 0 0 0 chr3 186154379 186154401 -41370177 + (A)n Simple_repeat Simple_repeat 1 22 0 245 275 12 25 chr3 186154461 186154541 -41370037 - HAL1 LINE L1 -944 1563 1485 406 302 74 85 chr3 186154795 186155173 -41369405 - HAL1 LINE L1 -1139 1368 995 27 29 0 0 chr3 186155951 186155985 -41368593 + AT_rich Low_complexity Low_complexity 1 34 0 210 333 42 21 chr3 186156822 186156918 -41367660 + MIR SINE MIR 48 145 -117 642 288 18 6 chr3 186157018 186157188 -41367390 - MLT1A2 LTR MaLR -202 172 1 520 247 66 33 chr3 186157368 186157550 -41367028 - L1MDa LINE L1 -6319 221 34 12940 207 26 19 chr3 186207700 186207891 -41316687 - L1M1 LINE L1 -4615 2950 2762 459 0 0 0 chr3 186207891 186207942 -41316636 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 12940 207 26 19 chr3 186207942 186210667 -41313911 - L1M1 LINE L1 -4803 2762 14 24899 123 35 13 chr3 186211259 186215922 -41308656 - L1P3 LINE L1 -913 5548 728 4361 135 18 6 chr3 186215921 186216325 -41308253 + L1P3 LINE L1 3 421 -6040 * 198 0 0 0 chr3 186216325 186216347 -41308231 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 4361 135 18 6 chr3 186216347 186216659 -41307919 + L1P3 LINE L1 421 728 -5733 33 43 0 0 chr3 186216784 186216831 -41307747 + AT_rich Low_complexity Low_complexity 1 47 0 1510 113 0 12 chr3 186218830 186219078 -41305500 + L1PA14 LINE L1 5263 5507 -654 1956 117 9 25 chr3 186219078 186219403 -41305175 + L1PA14 LINE L1 5841 6161 0 183 274 16 16 chr3 186220120 186220182 -41304396 + L2 LINE L2 3008 3069 -244 335 270 34 0 chr3 186220407 186220496 -41304082 - U13 snRNA snRNA -9 95 4 328 331 117 38 chr3 186224224 186224650 -41299928 - MLT1J LTR MaLR -45 466 7 25 0 0 0 chr3 186224883 186224908 -41299670 + AT_rich Low_complexity Low_complexity 1 25 0 183 304 131 68 chr3 186225753 186225944 -41298634 + MIR SINE MIR 43 245 -17 33 0 0 0 chr3 186225944 186225977 -41298601 + AT_rich Low_complexity Low_complexity 1 33 0 2256 100 3 10 chr3 186225977 186226288 -41298290 - AluSg SINE Alu -1 309 1 21 57 0 0 chr3 186227044 186227079 -41297499 + AT_rich Low_complexity Low_complexity 1 35 0 24 0 0 0 chr3 186227626 186227650 -41296928 + AT_rich Low_complexity Low_complexity 1 24 0 1097 194 71 84 chr3 186228591 186228958 -41295620 - MLT1A1 LTR MaLR 0 365 4 7819 113 10 5 chr3 186229111 186230271 -41294307 - L1PA8 LINE L1 -1367 4779 3614 6634 85 10 0 chr3 186230274 186231642 -41292936 + L1PA8 LINE L1 4798 6171 -1 326 141 0 16 chr3 186232582 186232646 -41291932 + (TCC)n Simple_repeat Simple_repeat 2 64 0 238 304 25 0 chr3 186234055 186234134 -41290444 - MLT1J LTR MaLR -327 184 104 42 77 0 0 chr3 186234211 186234302 -41290276 + AT_rich Low_complexity Low_complexity 1 91 0 5711 93 10 2 chr3 186234427 186235237 -41289341 + L1PA7 LINE L1 5336 6151 -3 21 36 0 0 chr3 186235320 186235348 -41289230 + AT_rich Low_complexity Low_complexity 1 28 0 377 284 52 69 chr3 186235350 186235758 -41288820 - MER57A LTR ERV1 0 403 3 1743 310 41 30 chr3 186235764 186236648 -41287930 - MER57-int LTR ERV1 -392 7145 6253 43856 32 21 1 chr3 186236651 186242672 -41281906 + L1HS LINE L1 7 6151 -4 579 64 13 0 chr3 186243026 186243104 -41281474 - MADE1 DNA Mariner 0 80 2 529 314 62 13 chr3 186243265 186243491 -41281087 - MER57-int LTR ERV1 -1328 6209 5973 39 50 0 0 chr3 186244039 186244099 -41280479 + AT_rich Low_complexity Low_complexity 1 60 0 21 36 0 0 chr3 186246408 186246436 -41278142 + GC_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 186246897 186246919 -41277659 + GC_rich Low_complexity Low_complexity 1 22 0 23 33 0 0 chr3 186247116 186247146 -41277432 + GC_rich Low_complexity Low_complexity 1 30 0 952 195 30 40 chr3 186251609 186251809 -41272769 - MER63A DNA MER1_type -12 198 1 360 0 0 0 chr3 186251959 186251999 -41272579 + (TG)n Simple_repeat Simple_repeat 1 40 0 1966 136 0 0 chr3 186252070 186252349 -41272229 - AluJb SINE Alu -18 294 16 192 217 0 0 chr3 186252383 186252429 -41272149 + GA-rich Low_complexity Low_complexity 2 47 0 290 248 22 44 chr3 186252548 186252685 -41271893 + L1ME3A LINE L1 5830 5963 -207 199 164 55 0 chr3 186252838 186252893 -41271685 + GA-rich Low_complexity Low_complexity 2 59 0 1196 42 0 0 chr3 186254672 186254814 -41269764 - AluSp/q SINE Alu 0 313 172 1663 207 90 0 chr3 186255584 186255951 -41268627 + MLT1G LTR MaLR 189 588 -2 564 271 117 46 chr3 186256039 186256560 -41268018 - L2 LINE L2 -559 2755 2198 1214 162 0 14 chr3 186256563 186256779 -41267799 + AluJo SINE Alu 87 299 -13 371 265 49 31 chr3 186256780 186257003 -41267575 - L2 LINE L2 -1109 2205 1979 2079 94 25 0 chr3 186257060 186257358 -41267220 + AluSx SINE Alu 1 305 0 2262 125 3 0 chr3 186257452 186257763 -41266815 + AluSx SINE Alu 1 312 0 623 259 23 6 chr3 186258148 186258322 -41266256 - AluJb SINE Alu -15 297 121 333 0 0 0 chr3 186258353 186258390 -41266188 + (TTAA)n Simple_repeat Simple_repeat 2 38 0 280 173 29 12 chr3 186258838 186258908 -41265670 + Alu SINE Alu 252 298 -4 647 199 176 0 chr3 186258908 186259084 -41265494 + L1ME3A LINE L1 5964 6170 0 283 295 107 20 chr3 186259583 186259881 -41264697 + L2 LINE L2 2365 2688 -626 821 259 65 65 chr3 186259913 186260377 -41264201 - L2 LINE L2 -32 3281 2818 227 297 14 14 chr3 186260767 186260841 -41263737 - L2 LINE L2 -30 3242 3169 1352 179 108 14 chr3 186265391 186265688 -41258890 - L1ME LINE L1 -427 5737 5413 474 171 12 0 chr3 186265717 186265813 -41258765 + L1ME3 LINE L1 6075 6333 -1 2035 64 0 0 chr3 186265933 186266168 -41258410 + AluSx SINE Alu 58 292 -20 1549 169 55 21 chr3 186266175 186266465 -41258113 + AluJb SINE Alu 1 300 -12 546 216 73 78 chr3 186266465 186266683 -41257895 + L1ME3 LINE L1 5885 6101 -61 1039 131 0 0 chr3 186266684 186266829 -41257749 + AluSq/x SINE Alu 1 145 -167 1590 160 86 18 chr3 186267264 186267602 -41256976 - THE1C LTR MaLR 0 375 15 1507 179 18 0 chr3 186267656 186267936 -41256642 + MER57A LTR ERV1 119 403 0 1248 263 25 4 chr3 186267936 186268505 -41256073 + L1M4 LINE L1 2535 3200 -2946 23 0 0 0 chr3 186268728 186268751 -41255827 + AT_rich Low_complexity Low_complexity 1 23 0 2447 214 56 35 chr3 186268773 186269030 -41255548 - L1MB8 LINE L1 -5 6173 5923 302 45 23 0 chr3 186269030 186269074 -41255504 + (TAGA)n Simple_repeat Simple_repeat 4 48 0 2447 214 56 35 chr3 186269074 186269567 -41255011 - L1MB8 LINE L1 -255 5923 5407 273 187 22 157 chr3 186269567 186269701 -41254877 - L1M4b LINE L1 -6031 828 713 1055 254 72 24 chr3 186269796 186270127 -41254451 - L1M4b LINE L1 -6464 395 49 23 92 0 0 chr3 186270279 186270344 -41254234 + AT_rich Low_complexity Low_complexity 1 65 0 421 301 66 25 chr3 186270601 186270797 -41253781 + L1MCb LINE L1 13 216 -5829 2318 272 52 35 chr3 186270798 186271147 -41253431 - L1MCb LINE L1 -4851 1194 853 210 91 0 0 chr3 186271147 186271180 -41253398 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 7742 14 0 0 chr3 186271180 186272371 -41252207 - L1PA3 LINE L1 -8 6147 4958 2318 272 52 35 chr3 186272371 186273329 -41251249 - L1MCb LINE L1 -5191 854 3 1389 276 69 15 chr3 186273349 186274236 -41250342 + L1M4 LINE L1 2134 3068 -3078 26 50 0 0 chr3 186276040 186276080 -41248498 + AT_rich Low_complexity Low_complexity 1 40 0 280 255 62 62 chr3 186278670 186278831 -41245747 + ERVL LTR ERVL 2430 2590 -3174 590 245 9 85 chr3 186278837 186278995 -41245583 + Charlie1a DNA MER1_type 2 143 -2618 1999 137 0 3 chr3 186278995 186279302 -41245276 + AluSq SINE Alu 1 306 0 590 245 9 85 chr3 186279302 186279354 -41245224 + Charlie1a DNA MER1_type 143 197 -1258 22 0 0 0 chr3 186279781 186279803 -41244775 + AT_rich Low_complexity Low_complexity 1 22 0 401 283 45 30 chr3 186280369 186280634 -41243944 - L1M4 LINE L1 -2973 3173 2905 23 54 0 0 chr3 186281256 186281293 -41243285 + AT_rich Low_complexity Low_complexity 1 37 0 24 77 0 0 chr3 186281443 186281495 -41243083 + AT_rich Low_complexity Low_complexity 1 52 0 524 314 76 82 chr3 186282763 186283212 -41241366 - L2 LINE L2 -4 3309 2864 1483 223 0 0 chr3 186283226 186283504 -41241074 + AluJb SINE Alu 3 280 -32 288 120 0 0 chr3 186283507 186283557 -41241021 + (CAAA)n Simple_repeat Simple_repeat 2 51 0 24 0 0 0 chr3 186283565 186283589 -41240989 + AT_rich Low_complexity Low_complexity 1 24 0 238 306 0 0 chr3 186283599 186283661 -41240917 - L2 LINE L2 -474 2840 2779 23 33 0 0 chr3 186284078 186284108 -41240470 + AT_rich Low_complexity Low_complexity 1 30 0 27 49 0 0 chr3 186284166 186284207 -41240371 + AT_rich Low_complexity Low_complexity 1 41 0 197 81 0 27 chr3 186285430 186285467 -41239111 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 300 316 55 15 chr3 186285919 186286318 -41238260 + L1M4 LINE L1 3596 4010 -2136 228 221 13 26 chr3 186286319 186286396 -41238182 + L1M4 LINE L1 5066 5141 -1005 555 272 81 68 chr3 186286401 186286581 -41237997 - L1M4 LINE L1 -964 5182 5006 1921 149 18 52 chr3 186286581 186286969 -41237609 + THE1C LTR MaLR 1 375 0 555 272 81 68 chr3 186286969 186287763 -41236815 - L1M4 LINE L1 -1140 5006 4012 24 32 0 0 chr3 186287849 186287880 -41236698 + AT_rich Low_complexity Low_complexity 1 31 0 22 35 0 0 chr3 186287961 186287990 -41236588 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr3 186288073 186288106 -41236472 + AT_rich Low_complexity Low_complexity 1 33 0 1599 211 7 26 chr3 186288352 186288656 -41235922 + AluJo SINE Alu 1 298 -14 1961 147 0 13 chr3 186289990 186290289 -41234289 - AluSq SINE Alu -18 295 1 2395 7 11 18 chr3 186290352 186290663 -41233915 - AluY SINE Alu 0 309 1 348 24 0 0 chr3 186290952 186290993 -41233585 + (CA)n Simple_repeat Simple_repeat 2 42 0 2229 123 3 0 chr3 186291052 186291402 -41233176 + AluSx SINE Alu 3 353 0 319 278 63 78 chr3 186291667 186292002 -41232576 + L1MEd LINE L1 821 1150 -4969 1709 123 63 37 chr3 186292047 186292347 -41232231 + AluSg SINE Alu 1 308 -2 5698 178 23 6 chr3 186292672 186294590 -41229988 - L1MA3 LINE L1 0 7724 5770 10594 210 16 9 chr3 186294595 186296780 -41227798 - L1MA3 LINE L1 -5356 2209 8 24 0 0 0 chr3 186297023 186297047 -41227531 + AT_rich Low_complexity Low_complexity 1 24 0 333 47 0 0 chr3 186297320 186297363 -41227215 + (CA)n Simple_repeat Simple_repeat 2 44 0 182 315 101 13 chr3 186297363 186297512 -41227066 - L2 LINE L2 -126 3187 3026 381 254 11 0 chr3 186297560 186297667 -41226911 + MLT1J2 LTR MaLR 55 200 -302 521 262 47 7 chr3 186297920 186298069 -41226509 + MIR SINE MIR 75 229 -33 321 300 33 60 chr3 186298291 186298441 -41226137 - L2 LINE L2 -588 2726 2581 11155 174 72 20 chr3 186298474 186299335 -41225243 - Tigger2 DNA MER2_type -141 2577 1762 2363 84 6 10 chr3 186299335 186299646 -41224932 - AluSp SINE Alu -3 310 1 11155 174 72 20 chr3 186299646 186300507 -41224071 - Tigger2 DNA MER2_type -956 1762 947 276 30 0 0 chr3 186300507 186300540 -41224038 + (TTTA)n Simple_repeat Simple_repeat 3 35 0 11155 174 72 20 chr3 186300540 186301266 -41223312 - Tigger2 DNA MER2_type -1771 947 1 22 0 0 0 chr3 186302294 186302316 -41222262 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 186302585 186302612 -41221966 + AT_rich Low_complexity Low_complexity 1 27 0 200 57 38 57 chr3 186302663 186302716 -41221862 + (TATAA)n Simple_repeat Simple_repeat 4 55 0 244 257 14 29 chr3 186302755 186302825 -41221753 - L2 LINE L2 -6 3307 3239 216 97 0 0 chr3 186303509 186303540 -41221038 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 2306 87 0 3 chr3 186304772 186305060 -41219518 + AluSx SINE Alu 18 304 -8 385 191 12 36 chr3 186305078 186305162 -41219416 - MLT1G1 LTR MaLR -462 133 52 221 326 186 36 chr3 186305172 186305558 -41219020 + L2 LINE L2 2839 3282 -31 23 33 0 0 chr3 186306837 186306867 -41217711 + GC_rich Low_complexity Low_complexity 1 30 0 552 153 9 36 chr3 186307986 186308097 -41216481 + AluSg/x SINE Alu 190 297 -15 201 328 96 8 chr3 186308102 186308227 -41216351 - L2 LINE L2 -610 2704 2569 186 43 0 0 chr3 186308435 186308458 -41216120 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2113 106 0 7 chr3 186308460 186308744 -41215834 - AluSg SINE Alu -28 282 1 226 315 55 48 chr3 186309451 186309597 -41214981 + L2 LINE L2 3167 3313 0 449 0 0 35 chr3 186310533 186310591 -41213987 + (GGAA)n Simple_repeat Simple_repeat 4 59 0 374 241 131 29 chr3 186311313 186311450 -41213128 - MIR SINE MIR -36 226 76 314 244 47 0 chr3 186311973 186312059 -41212519 + CT-rich Low_complexity Low_complexity 3 92 0 212 139 0 23 chr3 186312069 186312112 -41212466 + (CCCCCT)n Simple_repeat Simple_repeat 1 42 0 25 0 0 0 chr3 186313244 186313269 -41211309 + GC_rich Low_complexity Low_complexity 1 25 0 381 292 68 43 chr3 186316526 186316687 -41207891 + MIR3 SINE MIR 22 186 -22 209 218 0 18 chr3 186316712 186316767 -41207811 + (TGAA)n Simple_repeat Simple_repeat 3 56 0 583 280 117 17 chr3 186317890 186318129 -41206449 - Charlie8 DNA MER1_type -2141 276 14 2094 98 28 0 chr3 186318376 186318663 -41205915 - AluSp SINE Alu -18 295 1 234 0 0 0 chr3 186318807 186318833 -41205745 + (TG)n Simple_repeat Simple_repeat 1 26 0 519 167 44 9 chr3 186319165 186319279 -41205299 + FLAM_C SINE Alu 1 118 -15 2032 68 8 0 chr3 186320859 186321107 -41203471 + AluSp SINE Alu 1 250 -63 1869 93 12 8 chr3 186322621 186322878 -41201700 - AluSx SINE Alu -54 258 1 309 136 0 0 chr3 186322880 186322939 -41201639 + L1MA10 LINE L1 6266 6324 -10 2343 101 3 0 chr3 186322942 186323249 -41201329 - AluSx SINE Alu -4 308 1 235 317 79 0 chr3 186324432 186324533 -41200045 + L2 LINE L2 1686 1794 -1520 760 254 59 31 chr3 186324620 186324876 -41199702 + L1MC4a LINE L1 5701 5963 -1845 206 256 251 62 chr3 186325106 186325461 -41199117 + L2 LINE L2 1827 2248 -1066 199 102 20 102 chr3 186325640 186325689 -41198889 - L2 LINE L2 -6 3307 3263 261 261 92 42 chr3 186325697 186325816 -41198762 - MIR SINE MIR -90 172 48 1159 107 24 6 chr3 186326986 186327154 -41197424 - AluSg SINE Alu -126 184 14 1157 169 35 4 chr3 186327188 186327419 -41197159 - L1MB4 LINE L1 -11 6169 5932 485 329 46 42 chr3 186327424 186327661 -41196917 - L3 LINE CR1 -73 1504 1267 297 270 17 74 chr3 186328044 186328274 -41196304 - HAL1 LINE L1 -1247 1260 1044 2598 156 112 17 chr3 186328437 186328955 -41195623 - MLT1F1 LTR MaLR 0 567 1 1817 156 20 10 chr3 186329001 186329303 -41195275 + AluSx SINE Alu 1 305 -7 252 100 0 0 chr3 186329415 186329455 -41195123 + (TTCA)n Simple_repeat Simple_repeat 1 40 0 651 239 126 34 chr3 186329455 186329694 -41194884 - L2 LINE L2 -13 3300 3040 200 367 65 12 chr3 186330551 186330799 -41193779 - L2 LINE L2 -493 2821 2561 180 0 0 0 chr3 186331471 186331491 -41193087 + (T)n Simple_repeat Simple_repeat 1 20 0 1878 148 10 7 chr3 186331659 186331949 -41192629 + AluJo SINE Alu 9 299 -13 1167 131 0 18 chr3 186331950 186332118 -41192460 + AluJb SINE Alu 134 298 -14 2271 182 18 26 chr3 186332169 186332626 -41191952 + LTR32 LTR ERVL 15 467 -4 943 242 25 46 chr3 186332634 186332870 -41191708 + L1ME3A LINE L1 5667 5898 -272 2051 142 0 7 chr3 186332870 186333179 -41191399 + AluSx SINE Alu 1 307 -5 943 242 25 46 chr3 186333179 186333223 -41191355 + L1ME3A LINE L1 5898 5941 -229 23 68 0 0 chr3 186334419 186334463 -41190115 + GC_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr3 186334519 186334544 -41190034 + GC_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr3 186337458 186337484 -41187094 + GC_rich Low_complexity Low_complexity 1 26 0 265 200 0 0 chr3 186338238 186338283 -41186295 - LTR16C LTR ERVL -11 480 436 535 238 42 104 chr3 186338287 186338527 -41186051 - LTR16C LTR ERVL -178 313 89 994 274 73 79 chr3 186338679 186339120 -41185458 - MLT1K LTR MaLR -23 565 128 1478 179 0 19 chr3 186339311 186339574 -41185004 + AluJb SINE Alu 44 301 -11 374 111 14 0 chr3 186339574 186339646 -41184932 - Charlie4a DNA MER1_type -88 420 348 2395 103 0 3 chr3 186339649 186339960 -41184618 + AluSx SINE Alu 1 310 -2 2172 88 19 23 chr3 186339985 186340292 -41184286 + AluSq SINE Alu 1 306 -7 529 115 9 115 chr3 186340718 186340831 -41183747 - AluJo SINE Alu -125 187 87 1353 132 0 10 chr3 186341006 186341229 -41183349 - AluSg/x SINE Alu 0 310 103 1062 166 16 5 chr3 186341264 186341451 -41183127 - AluJb SINE Alu -4 308 120 1594 151 59 33 chr3 186342409 186342713 -41181865 + AluSx SINE Alu 1 312 0 1112 240 113 35 chr3 186343134 186343613 -41180965 + MLT1H1 LTR MaLR 40 555 0 1181 239 30 0 chr3 186343638 186343935 -41180643 - Charlie4a DNA MER1_type -201 307 2 2207 128 0 3 chr3 186344274 186344578 -41180000 - AluSx SINE Alu -9 303 1 234 262 0 16 chr3 186345140 186345201 -41179377 - MIR SINE MIR -201 61 2 512 120 54 0 chr3 186345205 186345297 -41179281 - AluS SINE Alu -215 98 2 294 308 44 0 chr3 186345321 186345412 -41179166 - L2 LINE L2 -4 3268 3174 602 305 38 59 chr3 186345423 186345764 -41178814 + L2 LINE L2 2363 2696 -618 321 26 0 0 chr3 186345764 186345802 -41178776 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1104 158 35 30 chr3 186345817 186346020 -41178558 + AluJb SINE Alu 107 310 -2 2207 142 3 0 chr3 186346033 186346342 -41178236 + AluSx SINE Alu 3 312 0 230 141 28 42 chr3 186348923 186348994 -41175584 + (GGGTG)n Simple_repeat Simple_repeat 1 70 0 191 77 0 0 chr3 186350062 186350088 -41174490 + (CCCCG)n Simple_repeat Simple_repeat 5 30 0 414 39 0 0 chr3 186350845 186350897 -41173681 + (TG)n Simple_repeat Simple_repeat 2 53 0 790 282 53 36 chr3 186351186 186351616 -41172962 + L2 LINE L2 2658 3090 -182 245 135 19 0 chr3 186352480 186352532 -41172046 + (TG)n Simple_repeat Simple_repeat 1 53 0 28 48 0 0 chr3 186352638 186352680 -41171898 + GC_rich Low_complexity Low_complexity 1 42 0 2623 141 56 22 chr3 186354441 186354552 -41170026 + L1MB8 LINE L1 5564 5670 -508 1810 143 0 0 chr3 186354552 186354817 -41169761 + AluSq SINE Alu 1 265 -48 2623 141 56 22 chr3 186354817 186355207 -41169371 + L1MB8 LINE L1 5670 6082 -96 258 160 0 0 chr3 186355292 186355342 -41169236 + C-rich Low_complexity Low_complexity 4 53 0 22 35 0 0 chr3 186355470 186355499 -41169079 + GC_rich Low_complexity Low_complexity 1 29 0 198 225 11 28 chr3 186355499 186355677 -41168901 + C-rich Low_complexity Low_complexity 4 178 0 299 232 288 0 chr3 186356119 186356244 -41168334 - MLT1J LTR MaLR -111 400 240 4068 156 101 23 chr3 186356316 186357097 -41167481 + MER21B LTR ERV1 1 842 -21 285 243 14 0 chr3 186359988 186360070 -41164508 - MIR SINE MIR -65 143 54 310 267 11 0 chr3 186362344 186362434 -41162144 - AluS SINE Alu -211 92 2 1381 197 15 112 chr3 186362438 186362911 -41161667 - MLT1C LTR MaLR -40 427 1 233 322 0 0 chr3 186362913 186362972 -41161606 - MLT1H1 LTR MaLR -496 59 1 819 242 201 4 chr3 186362979 186363248 -41161330 - LTR16C LTR ERVL -72 419 98 22 0 0 0 chr3 186363461 186363483 -41161095 + AT_rich Low_complexity Low_complexity 1 22 0 288 254 18 55 chr3 186363684 186363794 -41160784 + GA-rich Low_complexity Low_complexity 1 106 0 2241 110 0 16 chr3 186364053 186364370 -41160208 + AluSx SINE Alu 1 312 0 300 232 32 32 chr3 186366333 186366428 -41158150 + L1MC4 LINE L1 6612 6706 -1336 607 164 185 0 chr3 186368494 186368640 -41155938 - MER53 DNA DNA -6 183 11 24 0 0 0 chr3 186368838 186368862 -41155716 + AT_rich Low_complexity Low_complexity 1 24 0 607 270 88 26 chr3 186369138 186369364 -41155214 + MIR SINE MIR 2 241 -21 25 51 0 0 chr3 186369798 186369837 -41154741 + AT_rich Low_complexity Low_complexity 1 39 0 9171 113 15 2 chr3 186370080 186371472 -41153106 - L1PA7 LINE L1 -1539 4607 3198 5933 82 57 5 chr3 186371472 186372964 -41151614 + L1PA7 LINE L1 4613 6154 0 27 0 0 0 chr3 186374164 186374191 -41150387 + AT_rich Low_complexity Low_complexity 1 27 0 28 29 0 0 chr3 186375390 186375425 -41149153 + AT_rich Low_complexity Low_complexity 1 35 0 277 300 57 29 chr3 186376097 186376237 -41148341 - MLT1J LTR MaLR -304 245 102 247 263 8 135 chr3 186376561 186376694 -41147884 - MLT1J-int LTR MaLR -274 1097 982 25 31 0 0 chr3 186377249 186377281 -41147297 + AT_rich Low_complexity Low_complexity 1 32 0 643 313 83 49 chr3 186377606 186378093 -41146485 - MLT1G1 LTR MaLR 0 595 1 307 156 66 0 chr3 186378111 186378233 -41146345 + (TA)n Simple_repeat Simple_repeat 1 130 0 406 201 71 0 chr3 186378266 186378420 -41146158 + (TA)n Simple_repeat Simple_repeat 1 165 0 2082 231 62 28 chr3 186378420 186378997 -41145581 - L1MD3 LINE L1 0 7995 7399 225 250 23 80 chr3 186378998 186379086 -41145492 - MLT1F1 LTR MaLR -448 119 37 706 195 127 0 chr3 186379091 186379296 -41145282 - L1MD3 LINE L1 -880 7115 6885 7736 231 70 49 chr3 186379298 186380088 -41144490 - L1MC3 LINE L1 0 7785 7013 419 0 0 19 chr3 186380088 186380140 -41144438 + (TAA)n Simple_repeat Simple_repeat 2 52 0 7736 231 70 49 chr3 186380140 186382682 -41141896 - L1MC3 LINE L1 -772 7013 4384 583 235 7 7 chr3 186382762 186382898 -41141680 - L1PA15 LINE L1 0 6165 6030 465 36 0 0 chr3 186382901 186382957 -41141621 + MADE1 DNA Mariner 25 80 0 957 179 12 0 chr3 186382958 186383131 -41141447 - L1PA15 LINE L1 -135 6030 5856 * 1215 229 3 53 chr3 186383130 186383471 -41141107 - L1P LINE L1 -2319 3827 3504 2201 143 16 16 chr3 186383478 186383849 -41140729 - THE1C LTR MaLR -4 371 1 469 157 11 11 chr3 186383849 186383938 -41140640 - THE1C-int LTR MaLR 0 1580 1492 4556 189 21 14 chr3 186385089 186386428 -41138150 - L1PB4 LINE L1 0 6156 4808 252 257 27 80 chr3 186386545 186386732 -41137846 + L1M4 LINE L1 5015 5191 -955 209 107 54 18 chr3 186387110 186387166 -41137412 + CT-rich Low_complexity Low_complexity 2 59 0 2041 269 65 25 chr3 186387609 186388628 -41135950 + L1ME1 LINE L1 2228 3287 -2859 1645 259 80 46 chr3 186388615 186389176 -41135402 + L1ME1 LINE L1 5426 6017 -149 * 2142 82 23 10 chr3 186389176 186389479 -41135099 + AluSp SINE Alu 7 313 0 1645 259 80 46 chr3 186389479 186389616 -41134962 + L1ME1 LINE L1 6017 6148 -18 217 343 29 69 chr3 186390378 186390480 -41134098 + MER5B DNA MER1_type 2 99 -79 212 333 118 10 chr3 186390418 186390520 -41134058 - MER5A DNA MER1_type -72 117 5 * 21 0 0 0 chr3 186391058 186391079 -41133499 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr3 186391456 186391483 -41133095 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr3 186392608 186392632 -41131946 + AT_rich Low_complexity Low_complexity 1 24 0 22 80 0 0 chr3 186394191 186394241 -41130337 + AT_rich Low_complexity Low_complexity 1 50 0 735 178 22 56 chr3 186394278 186394458 -41130120 - FRAM SINE Alu 0 176 3 24 0 0 0 chr3 186394636 186394660 -41129918 + AT_rich Low_complexity Low_complexity 1 24 0 1794 299 91 47 chr3 186395737 186396691 -41127887 + L2 LINE L2 1797 2792 -522 494 350 7 52 chr3 186396845 186397134 -41127444 + L2 LINE L2 2817 3092 -221 24 0 0 0 chr3 186397713 186397737 -41126841 + AT_rich Low_complexity Low_complexity 1 24 0 357 200 71 58 chr3 186398696 186398851 -41125727 - Looper DNA T2_type -15 1543 1387 3047 189 110 19 chr3 186398863 186399700 -41124878 - Looper DNA T2_type -605 953 41 303 196 36 27 chr3 186399940 186400052 -41124526 + (TA)n Simple_repeat Simple_repeat 1 113 0 836 167 0 48 chr3 186400595 186400763 -41123815 + L1MA9 LINE L1 5849 6008 -304 * 1644 249 14 0 chr3 186400748 186401185 -41123393 + L1P LINE L1 3071 3513 -2633 1351 248 3 13 chr3 186401408 186401711 -41122867 - AluJo SINE Alu -12 300 1 180 0 0 0 chr3 186401733 186401753 -41122825 + (A)n Simple_repeat Simple_repeat 1 20 0 358 265 133 60 chr3 186402583 186402618 -41121960 - MIR SINE MIR -13 249 218 4424 87 0 2 chr3 186402618 186403206 -41121372 - LTR14C LTR ERVK 0 587 1 358 265 133 60 chr3 186403206 186403336 -41121242 - MIR SINE MIR -44 218 72 302 308 107 25 chr3 186403805 186403854 -41120724 - LTR16A LTR ERVL 0 450 406 1464 205 50 24 chr3 186403854 186404234 -41120344 - MLT1B LTR MaLR 0 390 1 302 308 107 25 chr3 186404234 186404343 -41120235 - LTR16A LTR ERVL -44 406 279 414 0 0 0 chr3 186405006 186405052 -41119526 + (TG)n Simple_repeat Simple_repeat 1 46 0 216 0 0 0 chr3 186405051 186405075 -41119503 + (GA)n Simple_repeat Simple_repeat 1 24 0 * 1469 203 10 13 chr3 186405290 186405601 -41118977 + AluJb SINE Alu 1 310 -2 222 219 0 0 chr3 186405604 186405645 -41118933 + GA-rich Low_complexity Low_complexity 3 43 0 21 36 0 0 chr3 186406349 186406377 -41118201 + AT_rich Low_complexity Low_complexity 1 28 0 304 261 23 0 chr3 186406522 186406610 -41117968 + L1MC4 LINE L1 6614 6703 -1339 236 304 0 0 chr3 186406631 186406710 -41117868 - L1MC4 LINE L1 -1340 6702 6624 234 0 0 0 chr3 186408854 186408880 -41115698 + (TA)n Simple_repeat Simple_repeat 2 27 0 602 212 31 10 chr3 186409915 186410108 -41114470 + L1MB1 LINE L1 2897 3093 -3053 2221 129 28 6 chr3 186410108 186410464 -41114114 - THE1B LTR MaLR 0 364 1 9159 138 38 35 chr3 186410464 186412038 -41112540 - THE1B-int LTR MaLR 0 1580 3 2084 127 42 22 chr3 186412042 186412402 -41112176 - THE1B LTR MaLR -2 424 1 7313 207 66 31 chr3 186412402 186413854 -41110724 + L1MB1 LINE L1 3089 4488 -1680 237 87 0 0 chr3 186413854 186413900 -41110678 + LTR66 LTR ERVL 394 439 -171 7313 207 66 31 chr3 186413900 186415241 -41109337 + L1MB1 LINE L1 4488 6021 -147 532 192 0 0 chr3 186415242 186415346 -41109232 + L1MB1 LINE L1 6065 6168 0 21 0 0 0 chr3 186415693 186415714 -41108864 + AT_rich Low_complexity Low_complexity 1 21 0 26021 123 36 25 chr3 186415878 186422124 -41102454 + L1PA7 LINE L1 11 6467 -2 232 275 260 10 chr3 186422305 186422505 -41102073 + L2 LINE L2 2253 2502 -812 17123 201 30 18 chr3 186422517 186430123 -41094455 + L1MA1 LINE L1 16 7717 -4 28 0 0 0 chr3 186430123 186430151 -41094427 + AT_rich Low_complexity Low_complexity 1 28 0 24 0 0 0 chr3 186430183 186430207 -41094371 + AT_rich Low_complexity Low_complexity 1 24 0 268 365 39 6 chr3 186430233 186430389 -41094189 + L2 LINE L2 2529 2689 -625 1961 152 0 7 chr3 186430450 186430760 -41093818 + AluSc SINE Alu 2 309 0 404 354 15 41 chr3 186430764 186430859 -41093719 + L2 LINE L2 2702 2791 -523 2730 29 0 0 chr3 186430859 186431172 -41093406 + AluYb8 SINE Alu 1 313 -5 404 354 15 41 chr3 186431172 186431271 -41093307 + L2 LINE L2 2791 2891 -423 345 250 19 100 chr3 186431511 186431671 -41092907 + L2 LINE L2 3161 3307 -6 851 160 12 0 chr3 186432916 186433085 -41091493 + CT-rich Low_complexity Low_complexity 2 172 0 3038 251 94 4 chr3 186433085 186434273 -41090305 + L1 LINE L1 2184 3598 -2548 1199 161 14 100 chr3 186434272 186434621 -41089957 - L1M1 LINE L1 -4885 2680 2362 * 2729 264 75 23 chr3 186434616 186435548 -41089030 - L1M1 LINE L1 -5455 2110 689 1440 250 28 0 chr3 186435553 186435873 -41088705 - L1M1 LINE L1 -7221 344 16 2063 211 18 26 chr3 186435873 186436568 -41088010 - L1M1 LINE L1 -631 5672 4978 8373 38 0 0 chr3 186436583 186439114 -41085464 - L1PA4 LINE L1 -1 6154 3574 8174 37 4 1 chr3 186439112 186440140 -41084438 + L1PA4 LINE L1 2543 3573 -2573 * 8129 243 50 41 chr3 186440137 186443482 -41081096 - L1 LINE L1 -1153 5695 2387 * 866 237 16 21 chr3 186443491 186443685 -41080893 + MER61A LTR ERV1 1 193 -150 313 91 0 0 chr3 186443666 186443710 -41080868 + MER61A LTR ERV1 300 343 0 * 1868 233 40 17 chr3 186443711 186444183 -41080395 + MER61A-int LTR ERV1 1 483 -4734 884 28 0 0 chr3 186444183 186444290 -41080288 - L1P2 LINE L1 -334 5821 5715 894 10 0 0 chr3 186444290 186444391 -41080187 + L1PA2 LINE L1 6051 6152 -3 315 203 0 0 chr3 186444396 186444460 -41080118 + MER61A-int LTR ERV1 486 549 -4668 20155 126 30 21 chr3 186444605 186445058 -41079520 + MER61A-int LTR ERV1 1406 1853 -3364 2248 95 7 3 chr3 186445058 186445352 -41079226 - AluY SINE Alu -16 295 1 20155 126 30 21 chr3 186445352 186448222 -41076356 + MER61A-int LTR ERV1 1853 4796 -421 1120 153 32 0 chr3 186448212 186448402 -41076176 + MER61A-int LTR ERV1 5021 5216 -1 * 1828 157 36 18 chr3 186448402 186448739 -41075839 + MER61A LTR ERV1 1 343 0 789 305 27 25 chr3 186448760 186450040 -41074538 - L1 LINE L1 -4575 2274 824 22 0 0 0 chr3 186450878 186450900 -41073678 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 186452314 186452342 -41072236 + AT_rich Low_complexity Low_complexity 1 28 0 368 82 16 0 chr3 186452692 186452753 -41071825 + (TG)n Simple_repeat Simple_repeat 1 62 0 193 250 98 0 chr3 186452963 186453047 -41071531 + MIR SINE MIR 46 136 -72 2117 119 13 10 chr3 186453232 186453543 -41071035 + AluSp SINE Alu 1 312 -1 2162 141 16 32 chr3 186454044 186454414 -41070164 - THE1B LTR MaLR 0 364 1 9183 146 36 10 chr3 186454414 186455954 -41068624 - THE1B-int LTR MaLR 0 1580 2 1963 163 16 27 chr3 186455955 186456323 -41068255 - THE1B LTR MaLR 0 364 1 580 231 23 8 chr3 186456545 186456675 -41067903 + FLAM_C SINE Alu 2 133 0 23 0 0 0 chr3 186456707 186456730 -41067848 + AT_rich Low_complexity Low_complexity 1 23 0 1684 214 12 0 chr3 186457340 186457681 -41066897 - MER7A DNA MER2_type 0 346 4 260 353 46 33 chr3 186457885 186458038 -41066540 + MIR SINE MIR 37 191 -71 1579 193 4 4 chr3 186458597 186458871 -41065707 + AluJo SINE Alu 12 285 -27 315 229 57 0 chr3 186459528 186459650 -41064928 + L1M4 LINE L1 3065 3193 -2953 367 311 36 12 chr3 186459660 186459838 -41064740 + L1MCa LINE L1 1 164 -5881 399 265 0 0 chr3 186459838 186459921 -41064657 + MLT1A2 LTR MaLR 1 83 -291 1898 177 40 44 chr3 186459928 186460466 -41064112 - MLT2A2 LTR ERVL -13 541 2 704 208 68 107 chr3 186460467 186460775 -41063803 + MLT1A2 LTR MaLR 79 374 0 802 300 74 14 chr3 186460812 186461179 -41063399 + L1MCa LINE L1 198 586 -5459 1668 278 33 21 chr3 186461271 186461526 -41063052 + L1MCa LINE L1 570 820 -5493 3140 158 63 17 chr3 186461526 186462110 -41062468 + LTR9 LTR ERV1 1 611 -1 1668 278 33 21 chr3 186462110 186462268 -41062310 + L1MCa LINE L1 820 975 -5338 769 87 9 17 chr3 186462268 186462383 -41062195 + L1PA7 LINE L1 6036 6149 -5 1668 278 33 21 chr3 186462383 186462834 -41061744 + L1MCa LINE L1 975 1453 -4860 3323 273 70 44 chr3 186462873 186465182 -41059396 + L1MCa LINE L1 2264 4621 -1943 * 3693 186 54 51 chr3 186465151 186466059 -41058519 + L1MC1 LINE L1 5841 6751 0 1128 283 47 17 chr3 186466076 186466670 -41057908 + L1MCa LINE L1 4625 5236 -1328 311 301 65 5 chr3 186466675 186466861 -41057717 + L1MCa LINE L1 5387 5583 -981 2080 107 0 4 chr3 186466885 186467166 -41057412 + AluSx SINE Alu 3 282 -30 21 0 0 0 chr3 186467293 186467314 -41057264 + AT_rich Low_complexity Low_complexity 1 21 0 9314 42 0 2 chr3 186468461 186469613 -41054965 + L1P LINE L1 4010 5159 -987 1594 212 53 63 chr3 186470232 186470742 -41053836 - MLT1D LTR MaLR 0 505 1 928 194 56 39 chr3 186471029 186471261 -41053317 - MLT1D LTR MaLR 0 505 270 708 230 18 12 chr3 186471311 186471476 -41053102 - MLT1D LTR MaLR -334 171 6 21 0 0 0 chr3 186471641 186471662 -41052916 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 186471786 186471810 -41052768 + AT_rich Low_complexity Low_complexity 1 24 0 229 188 62 16 chr3 186472496 186472560 -41052018 - L1MA10 LINE L1 -5 6329 6263 * 877 89 58 20 chr3 186472528 186472699 -41051879 + L1MA2 LINE L1 6027 6200 -104 352 208 14 14 chr3 186472811 186472883 -41051695 + MLT1F1 LTR MaLR 67 138 -429 24 67 0 0 chr3 186473075 186473120 -41051458 + AT_rich Low_complexity Low_complexity 1 45 0 21 71 0 0 chr3 186473358 186473400 -41051178 + AT_rich Low_complexity Low_complexity 1 42 0 1592 234 18 5 chr3 186474767 186475165 -41049413 + L1MC3 LINE L1 6595 6997 -788 4213 209 36 13 chr3 186475167 186476016 -41048562 + L1PA15-16 LINE L1 3 871 -5978 562 315 107 27 chr3 186476762 186477060 -41047518 - MLT1J2 LTR MaLR -123 327 6 33 66 0 0 chr3 186477888 186477949 -41046629 + AT_rich Low_complexity Low_complexity 1 61 0 23 0 0 0 chr3 186478162 186478185 -41046393 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr3 186478370 186478400 -41046178 + AT_rich Low_complexity Low_complexity 1 30 0 261 329 96 51 chr3 186479980 186480272 -41044306 + L2 LINE L2 2931 3235 -78 2310 310 30 33 chr3 186480374 186480611 -41043967 - L1M3b LINE L1 -4905 1376 1140 230 0 33 0 chr3 186480611 186480641 -41043937 + (TTTG)n Simple_repeat Simple_repeat 1 31 0 2310 310 30 33 chr3 186480641 186481848 -41042730 - L1M3b LINE L1 -5141 1140 56 419 139 0 13 chr3 186481848 186481927 -41042651 + (TTTC)n Simple_repeat Simple_repeat 3 80 0 467 177 0 0 chr3 186481927 186482006 -41042572 - AluSc SINE Alu -37 272 194 321 344 56 44 chr3 186482250 186482500 -41042078 - L1ME3A LINE L1 -30 6140 5888 371 309 14 43 chr3 186482545 186482752 -41041826 - L1ME3A LINE L1 -391 5779 5579 2318 79 0 13 chr3 186482983 186483298 -41041280 + AluY SINE Alu 1 311 0 21 36 0 0 chr3 186483353 186483381 -41041197 + AT_rich Low_complexity Low_complexity 1 28 0 236 365 71 0 chr3 186483381 186483507 -41041071 + MIR SINE MIR 91 225 -37 1713 189 116 13 chr3 186483838 186483860 -41040718 - MSTA LTR MaLR 0 428 410 2309 132 0 0 chr3 186483860 186484170 -41040408 + AluY SINE Alu 2 311 0 1713 189 116 13 chr3 186484170 186484528 -41040050 - MSTA LTR MaLR -18 410 9 377 272 54 76 chr3 186484564 186484788 -41039790 + L2 LINE L2 3094 3312 -1 23 0 0 0 chr3 186485536 186485559 -41039019 + AT_rich Low_complexity Low_complexity 1 23 0 22 70 0 0 chr3 186485831 186485874 -41038704 + AT_rich Low_complexity Low_complexity 1 43 0 403 280 36 31 chr3 186485958 186486230 -41038348 - L1MD1 LINE L1 -89 6077 5860 890 84 0 0 chr3 186486331 186486450 -41038128 - L1P LINE L1 -4900 1246 1128 24 0 0 0 chr3 186486851 186486875 -41037703 + AT_rich Low_complexity Low_complexity 1 24 0 994 219 13 17 chr3 186488382 186488620 -41035958 - Tigger1 DNA MER2_type -2175 243 7 7128 186 15 14 chr3 186488742 186489998 -41034580 - MER52A LTR ERV1 0 1755 498 1973 122 3 10 chr3 186491310 186491621 -41032957 - AluSg SINE Alu -1 309 1 21 0 0 0 chr3 186491623 186491644 -41032934 + AT_rich Low_complexity Low_complexity 1 21 0 396 321 57 93 chr3 186491722 186492280 -41032298 - L2 LINE L2 -1412 1902 1365 347 282 61 0 chr3 186492431 186492562 -41032016 + MIR SINE MIR 96 234 -28 335 336 83 21 chr3 186492757 186492998 -41031580 - L2 LINE L2 -2342 972 717 433 385 48 16 chr3 186493073 186493382 -41031196 + MLT1I LTR MaLR 56 374 -35 1237 246 0 6 chr3 186494115 186494428 -41030150 + AluSq SINE Alu 3 313 0 6559 226 75 38 chr3 186494448 186496542 -41028036 + L1MC3 LINE L1 5186 7354 -431 528 240 85 0 chr3 186496545 186496674 -41027904 + MLT2B1 LTR ERVL 1 140 -380 586 233 17 0 chr3 186496681 186496801 -41027777 + L1MC/D LINE L1 5564 5685 -659 759 217 36 101 chr3 186496823 186497059 -41027519 + MLT2D LTR ERVL 143 360 -54 351 0 0 0 chr3 186497059 186497098 -41027480 + (CA)n Simple_repeat Simple_repeat 2 40 0 759 217 36 101 chr3 186497098 186497138 -41027440 + MLT2D LTR ERVL 360 401 -13 1232 230 43 40 chr3 186497141 186497563 -41027015 + L1MC3 LINE L1 7361 7783 -2 2171 108 0 3 chr3 186497666 186497963 -41026615 - AluSc SINE Alu -13 296 1 36074 60 5 1 chr3 186498399 186503859 -41020719 - L1PA5 LINE L1 -3 6151 673 27 49 0 0 chr3 186504266 186504307 -41020271 + AT_rich Low_complexity Low_complexity 1 41 0 1826 137 56 0 chr3 186504316 186504600 -41019978 + AluSq SINE Alu 1 300 -13 1965 134 13 0 chr3 186505688 186505993 -41018585 + AluY SINE Alu 3 311 0 305 355 53 20 chr3 186506210 186506362 -41018216 + L1MEd LINE L1 299 455 -5664 46 33 0 0 chr3 186506666 186506726 -41017852 + AT_rich Low_complexity Low_complexity 1 60 0 320 256 95 77 chr3 186506765 186507038 -41017540 + L1MEd LINE L1 901 1178 -4941 2107 78 0 81 chr3 186508074 186508395 -41016183 + AluY SINE Alu 1 295 -16 193 213 0 38 chr3 186509195 186509275 -41015303 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 32 26 0 0 chr3 186509545 186509584 -41014994 + AT_rich Low_complexity Low_complexity 1 39 0 305 259 37 111 chr3 186509934 186510097 -41014481 + L1ME LINE L1 5464 5613 -508 2337 168 21 9 chr3 186510097 186510520 -41014058 - MSTA LTR MaLR 0 428 1 305 259 37 111 chr3 186510520 186510545 -41014033 + L1ME LINE L1 5613 5638 -483 24 53 0 0 chr3 186510713 186510751 -41013827 + AT_rich Low_complexity Low_complexity 1 38 0 2107 252 47 52 chr3 186510890 186511181 -41013397 + L1ME1 LINE L1 5001 5292 -874 513 131 0 0 chr3 186511181 186511265 -41013313 + L1MA1 LINE L1 6215 6298 -4 2107 252 47 52 chr3 186511265 186512137 -41012441 + L1ME1 LINE L1 5292 6161 -5 2230 94 3 0 chr3 186512439 186512738 -41011840 + AluSx SINE Alu 3 302 -10 21 0 0 0 chr3 186513197 186513218 -41011360 + AT_rich Low_complexity Low_complexity 1 21 0 22 111 0 0 chr3 186513508 186513607 -41010971 + AT_rich Low_complexity Low_complexity 1 99 0 1917 157 82 17 chr3 186513939 186514341 -41010237 + MSTA LTR MaLR 1 428 0 225 65 0 0 chr3 186514484 186514515 -41010063 + (TG)n Simple_repeat Simple_repeat 2 32 0 31 82 0 0 chr3 186515436 186515509 -41009069 + AT_rich Low_complexity Low_complexity 1 73 0 4452 151 10 2 chr3 186515574 186516659 -41007919 - THE1C-int LTR MaLR -446 1134 2 2329 141 16 3 chr3 186516660 186517030 -41007548 - THE1C LTR MaLR 0 375 1 1183 173 14 27 chr3 186517031 186517251 -41007327 + L1PA15 LINE L1 5928 6144 -21 23 0 0 0 chr3 186517284 186517307 -41007271 + AT_rich Low_complexity Low_complexity 1 23 0 778 254 143 48 chr3 186517680 186518038 -41006540 + MLT1E1 LTR MaLR 4 395 -259 1997 128 0 0 chr3 186518093 186518390 -41006188 - AluSx SINE Alu 0 307 11 727 237 121 5 chr3 186518493 186518700 -41005878 + MLT1E1 LTR MaLR 361 591 -2 195 274 0 0 chr3 186518916 186518967 -41005611 + L2 LINE L2 3219 3269 -44 349 317 104 45 chr3 186518971 186519280 -41005298 + MLT1I LTR MaLR 57 383 -26 23 33 0 0 chr3 186520528 186520558 -41004020 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr3 186520654 186520683 -41003895 + AT_rich Low_complexity Low_complexity 1 29 0 252 43 65 0 chr3 186520815 186520861 -41003717 + (TA)n Simple_repeat Simple_repeat 2 50 0 252 0 0 0 chr3 186520860 186520888 -41003690 + (GA)n Simple_repeat Simple_repeat 2 29 0 574 210 3 87 chr3 186521483 186521792 -41002786 + AluSx SINE Alu 30 312 0 6519 225 75 39 chr3 186521812 186523908 -41000670 + L1MC3 LINE L1 5186 7354 -431 528 240 85 0 chr3 186523911 186524040 -41000538 + MLT2B1 LTR ERVL 1 140 -380 586 233 17 0 chr3 186524047 186524167 -41000411 + L1MC/D LINE L1 5564 5685 -659 759 217 36 101 chr3 186524189 186524425 -41000153 + MLT2D LTR ERVL 143 360 -54 351 0 0 0 chr3 186524425 186524464 -41000114 + (CA)n Simple_repeat Simple_repeat 2 40 0 759 217 36 101 chr3 186524464 186524504 -41000074 + MLT2D LTR ERVL 360 401 -13 1232 230 43 40 chr3 186524507 186524929 -40999649 + L1MC3 LINE L1 7361 7783 -2 2171 108 0 3 chr3 186525032 186525329 -40999249 - AluSc SINE Alu -13 296 1 34193 58 6 1 chr3 186525765 186530973 -40993605 - L1PA5 LINE L1 -3 6151 920 2772 278 55 45 chr3 186530998 186532708 -40991870 - L1M4 LINE L1 -2025 4823 3097 24 0 0 0 chr3 186532839 186532863 -40991715 + GC_rich Low_complexity Low_complexity 1 24 0 25089 30 5 1 chr3 186533022 186536879 -40987699 + L1PA2 LINE L1 2273 6153 -2 3278 112 6 0 chr3 186536917 186537390 -40987188 + L1P LINE L1 3867 4342 -1804 378 148 16 0 chr3 186537456 186537517 -40987061 + U7 snRNA snRNA 1 62 -1 8438 43 29 3 chr3 186537761 186538882 -40985696 - L1P LINE L1 -1007 5139 3989 37 23 0 0 chr3 186539039 186539083 -40985495 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr3 186539843 186539872 -40984706 + GC_rich Low_complexity Low_complexity 1 29 0 802 83 76 7 chr3 186540241 186540386 -40984192 - L1PA12 LINE L1 -179 5989 5835 1167 161 68 24 chr3 186540493 186540741 -40983837 - LTR48B LTR ERV1 -2 642 384 705 256 60 18 chr3 186540849 186541130 -40983448 + MSTA LTR MaLR 1 293 -135 429 115 39 39 chr3 186541346 186541450 -40983128 + L1MCa LINE L1 1444 1547 -4879 23 33 0 0 chr3 186541702 186541732 -40982846 + AT_rich Low_complexity Low_complexity 1 30 0 219 139 0 0 chr3 186541834 186541870 -40982708 + (TTA)n Simple_repeat Simple_repeat 3 38 0 599 150 9 9 chr3 186542031 186542144 -40982434 - L1PB1 LINE L1 -1 6150 6038 306 67 0 0 chr3 186542217 186542262 -40982316 + (G)n Simple_repeat Simple_repeat 1 45 0 340 281 68 88 chr3 186542262 186542511 -40982067 - L1M4 LINE L1 -5920 929 686 2214 201 57 29 chr3 186542831 186543393 -40981185 + L1MC1 LINE L1 5423 6000 -333 1968 201 33 70 chr3 186543869 186544312 -40980266 + L1 LINE L1 3454 3869 -2277 1587 134 106 7 chr3 186544312 186544587 -40979991 + AluSx SINE Alu 1 302 -10 1968 201 33 70 chr3 186544587 186544756 -40979822 + L1 LINE L1 3869 4043 -2103 421 185 0 0 chr3 186544804 186544885 -40979693 + L1MA3 LINE L1 3110 3190 -4375 5698 174 25 14 chr3 186544950 186547170 -40977408 + L1MA3 LINE L1 5488 7724 0 619 265 133 0 chr3 186547174 186547385 -40977193 + L1MB4 LINE L1 5860 6098 -82 1048 65 0 43 chr3 186547633 186547772 -40976806 + AluSp SINE Alu 1 133 -180 21 0 0 0 chr3 186548252 186548273 -40976305 + AT_rich Low_complexity Low_complexity 1 21 0 1152 203 14 0 chr3 186548273 186548480 -40976098 + AluJb SINE Alu 1 210 -102 1503 157 0 115 chr3 186548533 186548871 -40975707 + AluSx SINE Alu 1 299 -3 456 119 60 0 chr3 186549925 186550009 -40974569 - L1MB4 LINE L1 -3 6177 6089 1555 195 80 0 chr3 186550011 186550349 -40974229 - L1MB3 LINE L1 -131 6052 5688 21 0 0 0 chr3 186550389 186550410 -40974168 + AT_rich Low_complexity Low_complexity 1 21 0 303 336 8 8 chr3 186550681 186550812 -40973766 + (TATG)n Simple_repeat Simple_repeat 2 132 0 234 0 0 0 chr3 186551069 186551095 -40973483 + (TG)n Simple_repeat Simple_repeat 2 27 0 2879 234 76 48 chr3 186551364 186553012 -40971566 + L1MCb LINE L1 2 1685 -4851 23 33 0 0 chr3 186553265 186553295 -40971283 + AT_rich Low_complexity Low_complexity 1 30 0 219 139 0 0 chr3 186553397 186553433 -40971145 + (TTA)n Simple_repeat Simple_repeat 3 38 0 1457 143 35 8 chr3 186553591 186553849 -40970729 - L1PB1 LINE L1 -1 6150 5886 9248 243 34 27 chr3 186553849 186557160 -40967418 + L1PA15 LINE L1 1524 4863 -1934 4608 151 9 10 chr3 186557164 186557939 -40966639 + L1PA15 LINE L1 6030 6803 -13 182 33 67 0 chr3 186557946 186557976 -40966602 + (TATATG)n Simple_repeat Simple_repeat 4 35 0 22 35 0 0 chr3 186558323 186558352 -40966226 + AT_rich Low_complexity Low_complexity 1 29 0 1814 134 45 10 chr3 186558416 186558706 -40965872 + AluSg SINE Alu 1 300 -10 446 275 135 29 chr3 186558708 186559122 -40965456 + L1M4 LINE L1 4217 4674 -1472 708 278 36 68 chr3 186559211 186559463 -40965115 + MER52A LTR ERV1 1 244 -1511 6056 165 26 0 chr3 186559463 186560449 -40964129 + THE1B-int LTR MaLR 569 1580 0 2233 123 43 0 chr3 186560449 186560798 -40963780 + THE1B LTR MaLR 1 364 0 755 282 87 74 chr3 186560865 186561326 -40963252 - MLT1D LTR MaLR -2 503 1 234 312 75 21 chr3 186561507 186561600 -40962978 + MLT1I LTR MaLR 180 277 -132 996 306 75 37 chr3 186561660 186562395 -40962183 - L1ME LINE L1 -4276 1985 1280 2071 116 7 10 chr3 186562395 186562705 -40961873 - AluSc SINE Alu 0 309 1 996 306 75 37 chr3 186562705 186563290 -40961288 - L1ME LINE L1 -4981 1280 559 291 268 32 24 chr3 186563842 186563965 -40960613 + L1 LINE L1 3 126 -5765 233 143 0 95 chr3 186564648 186564711 -40959867 + L1M1 LINE L1 5416 5472 -830 2335 74 0 0 chr3 186566036 186566335 -40958243 + AluY SINE Alu 1 299 -12 1034 170 5 34 chr3 186566499 186566729 -40957849 - AluSg/x SINE Alu 0 307 84 1276 205 86 46 chr3 186567145 186567496 -40957082 + MLT1A1 LTR MaLR 1 365 0 2400 72 3 0 chr3 186567532 186567837 -40956741 - AluY SINE Alu 0 311 1 435 305 93 53 chr3 186568169 186569970 -40954608 + L1MEc LINE L1 2223 4052 -2163 2014 293 51 47 chr3 186570107 186571064 -40953514 + L1MCb LINE L1 69 1029 -5016 436 180 22 0 chr3 186571058 186571147 -40953431 - L1M4 LINE L1 -1350 5499 5409 * 1047 226 43 9 chr3 186571147 186571496 -40953082 + L1 LINE L1 2745 3105 -2865 2797 227 59 17 chr3 186571508 186572297 -40952281 - L1PA15-16 LINE L1 -3226 3623 2803 690 265 42 44 chr3 186572292 186572699 -40951879 - L1M4 LINE L1 -2116 4733 4328 * 21 36 0 0 chr3 186572725 186572753 -40951825 + AT_rich Low_complexity Low_complexity 1 28 0 44 70 0 0 chr3 186572794 186572880 -40951698 + AT_rich Low_complexity Low_complexity 1 86 0 21 36 0 0 chr3 186573240 186573268 -40951310 + AT_rich Low_complexity Low_complexity 1 28 0 2281 108 0 0 chr3 186573268 186573573 -40951005 + AluSg SINE Alu 1 305 -5 6461 123 21 13 chr3 186573668 186574608 -40949970 - L1MA1 LINE L1 -10 6292 5337 2349 42 42 3 chr3 186574608 186574894 -40949684 - AluY SINE Alu -14 297 1 6461 123 21 13 chr3 186574894 186575071 -40949507 - L1MA1 LINE L1 -965 5337 5163 22 80 0 0 chr3 186575323 186575373 -40949205 + AT_rich Low_complexity Low_complexity 1 50 0 5806 25 0 0 chr3 186575618 186576293 -40948285 - L1PA3 LINE L1 -2 6153 5479 5358 30 0 3 chr3 186576293 186577038 -40947540 + L1PA3 LINE L1 4734 5476 -679 522 0 0 0 chr3 186577254 186577312 -40947266 + (GGAA)n Simple_repeat Simple_repeat 4 61 0 192 158 0 0 chr3 186577452 186577490 -40947088 + A-rich Low_complexity Low_complexity 1 38 0 378 148 16 0 chr3 186578637 186578698 -40945880 - U7 snRNA snRNA -1 62 1 4519 87 10 263 chr3 186578764 186579274 -40945304 - L1P LINE L1 -1804 4342 4402 7619 20 0 0 chr3 186579274 186580512 -40944066 - L1PA2 LINE L1 -2 6153 4912 4519 87 10 263 chr3 186580512 186581391 -40943187 - L1P LINE L1 -1743 4403 3304 2408 109 0 0 chr3 186581391 186581734 -40942844 + L1PA8 LINE L1 5823 6172 0 307 319 9 9 chr3 186582425 186582538 -40942040 + MER81 DNA DNA 2 114 0 220 254 45 0 chr3 186582965 186583032 -40941546 + MIR SINE MIR 183 252 -10 28 48 0 0 chr3 186583702 186583744 -40940834 + AT_rich Low_complexity Low_complexity 1 42 0 24 67 0 0 chr3 186583837 186583882 -40940696 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr3 186584360 186584390 -40940188 + AT_rich Low_complexity Low_complexity 1 30 0 26 30 0 0 chr3 186584491 186584524 -40940054 + AT_rich Low_complexity Low_complexity 1 33 0 26 0 0 0 chr3 186585159 186585185 -40939393 + AT_rich Low_complexity Low_complexity 1 26 0 22 35 0 0 chr3 186585933 186585962 -40938616 + AT_rich Low_complexity Low_complexity 1 29 0 27 62 0 0 chr3 186586140 186586188 -40938390 + AT_rich Low_complexity Low_complexity 1 48 0 513 300 73 69 chr3 186587256 186587457 -40937121 - L1MEd LINE L1 -4876 1243 1044 2138 137 48 11 chr3 186587457 186587808 -40936770 + THE1B LTR MaLR 1 364 0 513 300 73 69 chr3 186587808 186588143 -40936435 - L1MEd LINE L1 -5075 1044 705 323 269 8 30 chr3 186588384 186588518 -40936060 + (CTTG)n Simple_repeat Simple_repeat 2 132 0 419 282 146 29 chr3 186588529 186588809 -40935769 - L1M2 LINE L1 -5781 1068 756 1197 147 5 5 chr3 186588924 186589114 -40935464 - AluSq SINE Alu -123 190 1 180 271 28 75 chr3 186589321 186589428 -40935150 - MIR3 SINE MIR -1 207 106 27 49 0 0 chr3 186589652 186589693 -40934885 + AT_rich Low_complexity Low_complexity 1 41 0 28 61 0 0 chr3 186590072 186590121 -40934457 + AT_rich Low_complexity Low_complexity 1 49 0 274 256 136 68 chr3 186590999 186591175 -40933403 + MIR3 SINE MIR 18 205 -3 341 252 19 19 chr3 186591370 186591419 -40933159 + MER58 DNA MER1_type 169 217 -2203 1701 146 6 51 chr3 186591419 186591735 -40932843 + AluSx SINE Alu 1 302 -10 341 252 19 19 chr3 186591735 186591788 -40932790 + MER58 DNA MER1_type 216 271 -2149 21 71 0 0 chr3 186592289 186592331 -40932247 + AT_rich Low_complexity Low_complexity 1 42 0 189 107 0 0 chr3 186592367 186592395 -40932183 + (TTCA)n Simple_repeat Simple_repeat 4 31 0 285 247 0 0 chr3 186592520 186592601 -40931977 + (CATA)n Simple_repeat Simple_repeat 2 82 0 569 88 0 0 chr3 186593495 186593575 -40931003 + MADE1 DNA Mariner 1 80 0 19730 32 1 0 chr3 186594252 186597435 -40927143 + L1PA3 LINE L1 2970 6155 0 903 242 8 12 chr3 186597435 186597683 -40926895 + L1 LINE L1 3261 3507 -2639 388 288 61 25 chr3 186598036 186598199 -40926379 - L1ME LINE L1 -465 5697 5529 25 75 0 0 chr3 186600430 186600483 -40924095 + AT_rich Low_complexity Low_complexity 1 53 0 265 269 65 0 chr3 186601485 186601578 -40923000 - LTR41 LTR ERVL -10 763 665 640 196 67 39 chr3 186602020 186602199 -40922379 - LTR41 LTR ERVL -589 184 1 25 0 0 0 chr3 186602226 186602251 -40922327 + AT_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3 186602293 186602316 -40922262 + AT_rich Low_complexity Low_complexity 1 23 0 195 179 51 0 chr3 186602708 186602747 -40921831 - L2 LINE L2 -13 3259 3219 505 291 94 41 chr3 186602788 186603212 -40921366 + L1ME LINE L1 4483 4948 -1198 1775 160 7 10 chr3 186603443 186603736 -40920842 + AluSx SINE Alu 9 300 -12 250 289 32 36 chr3 186603799 186604044 -40920534 + L1ME LINE L1 5258 5502 -662 663 198 97 97 chr3 186605224 186605451 -40919127 - L1MD3 LINE L1 -360 7635 7409 393 320 8 0 chr3 186605456 186605578 -40919000 - MLT1F1 LTR MaLR -442 125 3 399 239 15 52 chr3 186605579 186605606 -40918972 - L1MD3 LINE L1 -716 7279 7253 2035 128 3 7 chr3 186605606 186605902 -40918676 - AluSx SINE Alu -17 295 1 399 239 15 52 chr3 186605902 186606008 -40918570 - L1MD3 LINE L1 -742 7253 7151 417 320 33 0 chr3 186606010 186606132 -40918446 + MLT1A1 LTR MaLR 3 128 -300 198 150 0 0 chr3 186606167 186606207 -40918371 + (TC)n Simple_repeat Simple_repeat 2 41 0 509 263 42 21 chr3 186606243 186606433 -40918145 + MLT1A1 LTR MaLR 172 365 0 250 228 129 0 chr3 186606438 186606539 -40918039 - L1MD3 LINE L1 -847 7148 7035 934 323 21 21 chr3 186606543 186606874 -40917704 - MLT1E2 LTR MaLR -8 618 288 2207 220 92 33 chr3 186607043 186607761 -40916817 - L1MC3 LINE L1 -1629 6225 5466 1796 189 17 20 chr3 186607762 186608116 -40916462 + MLT1A2 LTR MaLR 6 358 -16 2573 272 33 51 chr3 186608132 186609302 -40915276 - L1MC3 LINE L1 -744 5471 4327 2118 94 3 31 chr3 186609302 186609621 -40914957 - AluY SINE Alu -1 310 1 2573 272 33 51 chr3 186609621 186609801 -40914777 - L1MC3 LINE L1 -1888 4327 4145 237 160 53 27 chr3 186609830 186609905 -40914673 + (TA)n Simple_repeat Simple_repeat 1 77 0 430 229 29 0 chr3 186609919 186610024 -40914554 - L1MA9 LINE L1 -53 6259 6152 694 270 56 18 chr3 186610073 186610358 -40914220 - L1MC3 LINE L1 -2065 4150 3855 720 254 72 5 chr3 186610376 186610615 -40913963 - L1MC3 LINE L1 -2415 3800 3537 1136 219 5 0 chr3 186610617 186610818 -40913760 - AluJo SINE Alu -26 286 85 227 136 0 0 chr3 186610824 186610868 -40913710 + LTR66 LTR ERVL 395 438 -172 312 286 0 22 chr3 186610875 186610966 -40913612 - L1MC4 LINE L1 -1339 6703 6615 336 175 0 0 chr3 186610971 186611034 -40913544 + (TA)n Simple_repeat Simple_repeat 2 64 0 315 0 0 0 chr3 186611035 186611070 -40913508 + (TG)n Simple_repeat Simple_repeat 1 35 0 2146 131 3 0 chr3 186611081 186611393 -40913185 - AluSp SINE Alu 0 313 1 243 251 163 67 chr3 186611393 186611455 -40913123 - L1MC3 LINE L1 -3998 2398 2343 2192 143 85 10 chr3 186611455 186611853 -40912725 + MSTA LTR MaLR 1 428 0 243 251 163 67 chr3 186611853 186612177 -40912401 - L1MC3 LINE L1 -4053 2343 1975 2248 71 7 7 chr3 186612319 186612627 -40911951 + AluY SINE Alu 1 308 -3 3618 141 271 91 chr3 186612881 186614318 -40910260 - pTR5 LTR ERV1 0 2438 743 509 304 27 16 chr3 186617116 186617373 -40907205 + LTR37B LTR ERV1 204 463 -5 225 0 0 0 chr3 186617435 186617460 -40907118 + (TG)n Simple_repeat Simple_repeat 2 26 0 246 217 152 33 chr3 186618271 186618363 -40906215 + MIR SINE MIR 82 184 -78 1768 93 33 83 chr3 186618870 186619172 -40905406 - AluSg SINE Alu -23 287 1 802 321 70 0 chr3 186619566 186619940 -40904638 - L1ME1 LINE L1 -63 6103 5704 6255 154 21 5 chr3 186620641 186620832 -40903746 + L1MA2 LINE L1 4836 5022 -1282 279 0 0 0 chr3 186620832 186620863 -40903715 + (CA)n Simple_repeat Simple_repeat 2 32 0 6255 154 21 5 chr3 186620863 186622111 -40902467 + L1MA2 LINE L1 5022 6304 0 4980 174 92 4 chr3 186622159 186623097 -40901481 + LTR28 LTR ERV1 1 1020 0 660 256 24 12 chr3 186623222 186623390 -40901188 + AluJo SINE Alu 119 288 -24 1917 171 97 8 chr3 186624345 186624738 -40899840 + MSTA LTR MaLR 1 428 0 597 207 82 0 chr3 186624861 186624996 -40899582 + MSTA LTR MaLR 283 428 0 2338 80 3 0 chr3 186625266 186625567 -40899011 + AluY SINE Alu 3 304 -7 21 0 0 0 chr3 186627011 186627032 -40897546 + AT_rich Low_complexity Low_complexity 1 21 0 11548 31 1 1 chr3 186627312 186629476 -40895102 - L1PA3 LINE L1 -3 6152 3989 37 23 0 0 chr3 186629633 186629677 -40894901 + AT_rich Low_complexity Low_complexity 1 44 0 635 196 17 17 chr3 186630457 186630636 -40893942 + GA-rich Low_complexity Low_complexity 1 179 0 212 234 0 16 chr3 186630665 186630729 -40893849 + GA-rich Low_complexity Low_complexity 4 66 0 548 296 77 70 chr3 186630951 186631287 -40893291 + L1MEd LINE L1 705 1046 -5083 2102 143 48 11 chr3 186631287 186631638 -40892940 - THE1B LTR MaLR 0 364 1 548 296 77 70 chr3 186631638 186631904 -40892674 + L1MEd LINE L1 1046 1309 -4820 3895 151 70 53 chr3 186632058 186632386 -40892192 - L1MA7 LINE L1 -140 6151 5830 195 114 0 0 chr3 186632386 186632421 -40892157 + (TG)n Simple_repeat Simple_repeat 1 35 0 3895 151 70 53 chr3 186632421 186632895 -40891683 - L1MA7 LINE L1 -461 5830 5331 2240 101 13 0 chr3 186632895 186633201 -40891377 + AluSg SINE Alu 1 310 0 3895 151 70 53 chr3 186633201 186633250 -40891328 - L1MA7 LINE L1 -960 5331 5284 2048 228 24 0 chr3 186633282 186633747 -40890831 + L1 LINE L1 4490 4965 -1181 1528 119 0 13 chr3 186634008 186634243 -40890335 + AluSq SINE Alu 73 304 -9 475 255 43 7 chr3 186634248 186634389 -40890189 - L1MCb LINE L1 -5331 714 569 21 0 0 0 chr3 186634841 186634862 -40889716 + AT_rich Low_complexity Low_complexity 1 21 0 248 120 20 0 chr3 186635144 186635194 -40889384 + (TA)n Simple_repeat Simple_repeat 2 52 0 24 0 0 0 chr3 186635232 186635256 -40889322 + AT_rich Low_complexity Low_complexity 1 24 0 269 338 0 0 chr3 186635353 186635433 -40889145 - L1ME2 LINE L1 -45 6119 6040 24 91 0 0 chr3 186635505 186635571 -40889007 + AT_rich Low_complexity Low_complexity 1 66 0 302 186 196 49 chr3 186635571 186635673 -40888905 + L2 LINE L2 3196 3312 -1 21 57 0 0 chr3 186635940 186635975 -40888603 + AT_rich Low_complexity Low_complexity 1 35 0 1891 125 0 47 chr3 186636909 186637251 -40887327 + AluSq SINE Alu 1 328 0 1279 321 173 25 chr3 186639290 186640141 -40884437 - L2 LINE L2 -1224 2090 1114 29 90 0 0 chr3 186641046 186641124 -40883454 + AT_rich Low_complexity Low_complexity 1 78 0 28 0 0 0 chr3 186641294 186641322 -40883256 + AT_rich Low_complexity Low_complexity 1 28 0 2055 116 6 29 chr3 186642222 186642533 -40882045 + AluSg SINE Alu 1 304 -6 444 19 0 0 chr3 186645341 186645394 -40879184 + (TG)n Simple_repeat Simple_repeat 2 54 0 23 33 0 0 chr3 186645743 186645773 -40878805 + AT_rich Low_complexity Low_complexity 1 30 0 2008 110 34 3 chr3 186646218 186646510 -40878068 - AluSx SINE Alu -11 301 1 217 329 164 10 chr3 186646846 186647053 -40877525 + MIR SINE MIR 9 247 -15 304 288 50 50 chr3 186647360 186647499 -40877079 - MLT1I LTR MaLR -269 140 2 248 386 18 18 chr3 186647565 186647679 -40876899 - MIR SINE MIR -63 145 32 1241 273 37 48 chr3 186647909 186648342 -40876236 + LTR41 LTR ERVL 340 767 -6 2824 139 187 93 chr3 186648551 186649379 -40875199 + Tigger3b DNA MER2_type 1 906 -325 311 284 0 0 chr3 186649376 186649443 -40875135 + Tigger3b DNA MER2_type 1165 1231 0 * 2261 104 0 0 chr3 186649537 186649845 -40874733 + AluY SINE Alu 1 308 -3 21 71 0 0 chr3 186650292 186650334 -40874244 + AT_rich Low_complexity Low_complexity 1 42 0 353 250 0 11 chr3 186651703 186651795 -40872783 + L2 LINE L2 2359 2449 -865 29 0 0 0 chr3 186651925 186651954 -40872624 + AT_rich Low_complexity Low_complexity 1 29 0 416 380 62 22 chr3 186652032 186652306 -40872272 + L2 LINE L2 2543 2827 -487 22 56 0 0 chr3 186652375 186652411 -40872167 + AT_rich Low_complexity Low_complexity 1 36 0 183 292 202 42 chr3 186653778 186653946 -40870632 + MIR SINE MIR 6 200 -62 2204 51 40 4 chr3 186654223 186654555 -40870023 - AluY SINE Alu 0 342 1 181 98 49 0 chr3 186654929 186654970 -40869608 + (TA)n Simple_repeat Simple_repeat 2 44 0 425 308 110 6 chr3 186655015 186655197 -40869381 - MIR SINE MIR -4 258 58 1527 194 82 0 chr3 186655205 186655534 -40869044 - L1 LINE L1 -1876 4270 3915 2577 204 44 27 chr3 186655535 186655672 -40868906 + L1MA9 LINE L1 4657 4790 -1395 333 0 0 0 chr3 186655672 186655709 -40868869 + (TA)n Simple_repeat Simple_repeat 2 38 0 2577 204 44 27 chr3 186655709 186656344 -40868234 + L1MA9 LINE L1 4790 5438 -747 3446 186 39 18 chr3 186656356 186657155 -40867423 + L1MA9 LINE L1 5497 6312 0 23 54 0 0 chr3 186657203 186657240 -40867338 + AT_rich Low_complexity Low_complexity 1 37 0 414 276 28 77 chr3 186657252 186657433 -40867145 + L2 LINE L2 2969 3140 -173 21 0 0 0 chr3 186658347 186658368 -40866210 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 186659414 186659435 -40865143 + AT_rich Low_complexity Low_complexity 1 21 0 3621 288 80 74 chr3 186659494 186661532 -40863046 + L1 LINE L1 10 2058 -4791 2975 36 8 0 chr3 186661532 186661891 -40862687 + L1PA4 LINE L1 5470 5831 -324 6806 256 49 16 chr3 186661894 186664614 -40859964 + L1 LINE L1 2147 4960 -1888 471 284 54 7 chr3 186664996 186665144 -40859434 + LTR33 LTR ERVL 3 157 -364 524 291 89 38 chr3 186665173 186665465 -40859113 + LTR33 LTR ERVL 206 512 -9 1543 263 80 24 chr3 186665598 186665971 -40858607 - L1ME1 LINE L1 -17 6149 5798 7413 34 0 4 chr3 186665971 186666994 -40857584 - L1PA4 LINE L1 -3 6152 5131 1543 263 80 24 chr3 186666994 186667423 -40857155 - L1ME1 LINE L1 -368 5798 5255 269 274 44 0 chr3 186667433 186667568 -40857010 + (TA)n Simple_repeat Simple_repeat 2 142 0 200 86 29 0 chr3 186667652 186667687 -40856891 + (TTTTA)n Simple_repeat Simple_repeat 4 39 0 309 276 0 60 chr3 186667696 186667830 -40856748 - L1ME1 LINE L1 -1039 5107 4982 1077 303 65 16 chr3 186667843 186668656 -40855922 - L1ME1 LINE L1 -1125 5021 4166 470 161 42 25 chr3 186668710 186668828 -40855750 + L1MB2 LINE L1 6050 6169 -2 366 287 41 17 chr3 186668891 186669184 -40855394 - L1ME1 LINE L1 -2000 4146 3798 22 35 0 0 chr3 186669240 186669269 -40855309 + AT_rich Low_complexity Low_complexity 1 29 0 1829 219 32 31 chr3 186669316 186669830 -40854748 - L1MC3 LINE L1 -32 7753 5789 612 170 27 90 chr3 186669812 186669882 -40854696 - L1MA5 LINE L1 -22 6278 6205 * 1960 122 0 0 chr3 186669882 186670182 -40854396 + AluSg1 SINE Alu 2 301 0 612 170 27 90 chr3 186670182 186670298 -40854280 - L1MA5 LINE L1 -95 6205 6103 646 202 0 8 chr3 186670315 186670434 -40854144 + AluJb SINE Alu 167 284 -28 406 118 0 94 chr3 186670449 186670534 -40854044 - AluJo SINE Alu -176 136 60 2665 180 34 69 chr3 186670560 186670985 -40853593 - L1MA4 LINE L1 -182 6118 5724 1125 179 35 109 chr3 186670985 186671297 -40853281 + AluJb SINE Alu 1 289 -13 2665 180 34 69 chr3 186671297 186671550 -40853028 - L1MA4 LINE L1 -576 5724 5464 1242 208 0 0 chr3 186671549 186671799 -40852779 - L1P LINE L1 -3057 3089 2840 * 526 263 78 48 chr3 186671796 186671845 -40852733 - L1ME1 LINE L1 -2892 3254 3208 * 2045 128 0 0 chr3 186671845 186672143 -40852435 - AluSg SINE Alu -12 298 1 526 263 78 48 chr3 186672143 186672554 -40852024 - L1ME1 LINE L1 -2938 3208 2780 2342 14 29 0 chr3 186673249 186673525 -40851053 - L1PA2 LINE L1 -5 6150 5867 2313 92 0 3 chr3 186674025 186674350 -40850228 - L1PA12 LINE L1 -10 6158 5835 1167 173 72 26 chr3 186674457 186674749 -40849829 - LTR48B LTR ERV1 -2 642 384 2446 58 10 7 chr3 186674760 186675230 -40849348 - AluY SINE Alu 0 471 1 1025 234 58 8 chr3 186675254 186675511 -40849067 - LTR48B LTR ERV1 -346 298 29 4128 203 27 59 chr3 186677187 186677225 -40847353 - MER54A LTR ERVL 0 901 863 2257 130 99 8 chr3 186677225 186677617 -40846961 + MSTA LTR MaLR 1 428 0 4128 203 27 59 chr3 186677617 186678508 -40846070 - MER54A LTR ERVL -38 863 2 276 308 41 53 chr3 186678516 186678685 -40845893 + MIR SINE MIR 82 248 -14 26 30 0 0 chr3 186678965 186678998 -40845580 + AT_rich Low_complexity Low_complexity 1 33 0 37 23 0 0 chr3 186679040 186679084 -40845494 + AT_rich Low_complexity Low_complexity 1 44 0 994 240 65 46 chr3 186679316 186679683 -40844895 + MLT1A2 LTR MaLR 1 374 0 461 231 19 0 chr3 186680352 186680460 -40844118 - MIR3 SINE MIR -13 195 86 24 0 0 0 chr3 186680513 186680537 -40844041 + AT_rich Low_complexity Low_complexity 1 24 0 314 88 59 0 chr3 186681180 186681248 -40843330 + (TA)n Simple_repeat Simple_repeat 1 72 0 260 235 0 0 chr3 186681258 186681309 -40843269 + MER54A LTR ERVL 129 179 -722 603 127 14 7 chr3 186681309 186681451 -40843127 + (TA)n Simple_repeat Simple_repeat 2 144 0 21 0 0 0 chr3 186681974 186681995 -40842583 + AT_rich Low_complexity Low_complexity 1 21 0 1064 279 66 31 chr3 186683045 186683528 -40841050 - L1ME1 LINE L1 -5 6161 5662 258 255 0 0 chr3 186683518 186683628 -40840950 - L1MC3 LINE L1 -1135 6703 6588 * 225 0 0 0 chr3 186683628 186683653 -40840925 + (TA)n Simple_repeat Simple_repeat 2 26 0 463 218 97 24 chr3 186683658 186683782 -40840796 - L1ME1 LINE L1 -506 5660 5528 21 0 0 0 chr3 186684973 186684994 -40839584 + AT_rich Low_complexity Low_complexity 1 21 0 22 94 0 0 chr3 186685083 186685147 -40839431 + AT_rich Low_complexity Low_complexity 1 64 0 1591 148 4 0 chr3 186685335 186685579 -40838999 + AluSg/x SINE Alu 65 309 -1 304 225 22 0 chr3 186687556 186687645 -40836933 + L1MA8 LINE L1 6194 6284 -7 1731 118 85 0 chr3 186687997 186688267 -40836311 - AluSx SINE Alu -17 295 3 302 306 65 5 chr3 186688291 186688477 -40836101 - L1ME1 LINE L1 -981 5165 4969 22 35 0 0 chr3 186689370 186689399 -40835179 + AT_rich Low_complexity Low_complexity 1 29 0 207 178 27 14 chr3 186690624 186690697 -40833881 + CT-rich Low_complexity Low_complexity 2 75 0 25 65 0 0 chr3 186691110 186691156 -40833422 + AT_rich Low_complexity Low_complexity 1 46 0 396 59 0 0 chr3 186691600 186691651 -40832927 + (TG)n Simple_repeat Simple_repeat 2 52 0 959 252 23 4 chr3 186691655 186691913 -40832665 + L1MB5 LINE L1 5628 5890 -284 * 3406 194 31 11 chr3 186691904 186692549 -40832029 + L1M1 LINE L1 16 673 -6892 1244 218 12 0 chr3 186692533 186692785 -40831793 + L1M1 LINE L1 1098 1352 -6213 * 2975 105 33 0 chr3 186692786 186693215 -40831363 - MLT2A1 LTR ERVL -1 443 1 9884 91 13 0 chr3 186693215 186694540 -40830038 - HERVL-A1 LTR ERVL 0 5654 4313 5838 98 9 0 chr3 186694533 186695325 -40829253 - HERVL LTR ERVL -4791 863 65 * 225 311 0 0 chr3 186695332 186695422 -40829156 + L1MC4 LINE L1 6614 6703 -1339 232 265 0 0 chr3 186695427 186695476 -40829102 + (CATA)n Simple_repeat Simple_repeat 3 51 0 2172 163 25 8 chr3 186695491 186695884 -40828694 - MLT2A1 LTR ERVL -44 400 1 10908 194 42 15 chr3 186695884 186697910 -40826668 + L1M1 LINE L1 1348 3317 -4248 351 0 0 0 chr3 186697910 186697949 -40826629 + (CA)n Simple_repeat Simple_repeat 2 40 0 10908 194 42 15 chr3 186697949 186698119 -40826459 + L1M1 LINE L1 3317 3481 -4084 908 129 27 0 chr3 186698119 186698266 -40826312 + L1MA3 LINE L1 6150 6300 -5 10908 194 42 15 chr3 186698266 186699322 -40825256 + L1M1 LINE L1 3481 4691 -2874 * 18524 50 10 3 chr3 186699318 186701691 -40822887 + L1P LINE L1 606 2993 -3153 255 292 11 0 chr3 186701817 186701906 -40822672 + Zaphod DNA AcHobo 3868 3957 -74 665 291 59 0 chr3 186702324 186702527 -40822051 + MER58C DNA MER1_type 1 215 0 255 240 67 80 chr3 186702583 186702733 -40821845 - HERVL LTR ERVL -1282 3714 3567 354 206 0 0 chr3 186702745 186702813 -40821765 + L1MC4 LINE L1 6636 6703 -1339 316 237 21 54 chr3 186702771 186702864 -40821714 - L1MC4 LINE L1 -1339 6703 6614 * 312 172 17 0 chr3 186702847 186702905 -40821673 - L1MCa LINE L1 -4362 2064 2006 * 499 303 0 0 chr3 186702907 186703052 -40821526 - HERVL LTR ERVL -1820 3834 3690 1715 185 13 50 chr3 186704168 186704471 -40820107 - MLT1A1 LTR MaLR 0 365 77 925 62 86 0 chr3 186704471 186704599 -40819979 + MER85 DNA T2_type 1 139 0 1715 185 13 50 chr3 186704599 186704674 -40819904 - MLT1A1 LTR MaLR -288 77 1 243 0 0 0 chr3 186705213 186705240 -40819338 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 730 324 73 22 chr3 186705510 186705865 -40818713 - LTR16C LTR ERVL -48 443 71 245 213 49 0 chr3 186706274 186706335 -40818243 - MLT1K LTR MaLR -2 586 523 1186 215 73 39 chr3 186706476 186706806 -40817772 + L1ME1 LINE L1 5821 6161 -5 33 43 0 0 chr3 186706815 186706862 -40817716 + AT_rich Low_complexity Low_complexity 1 47 0 389 317 136 39 chr3 186707674 186707983 -40816595 - L1MC4 LINE L1 -2177 5631 5293 192 247 14 82 chr3 186708163 186708236 -40816342 - MIR SINE MIR -105 157 90 32 43 0 0 chr3 186708352 186708398 -40816180 + AT_rich Low_complexity Low_complexity 1 46 0 321 277 9 22 chr3 186709162 186709396 -40815182 + GA-rich Low_complexity Low_complexity 1 230 0 234 0 0 0 chr3 186710833 186710859 -40813719 + (T)n Simple_repeat Simple_repeat 1 26 0 28 29 0 0 chr3 186711209 186711244 -40813334 + AT_rich Low_complexity Low_complexity 1 35 0 718 203 6 28 chr3 186711245 186711403 -40813175 + L1MA4 LINE L1 4220 4376 -1770 1837 146 0 31 chr3 186711403 186711767 -40812811 + AluSx SINE Alu 4 358 0 718 203 6 28 chr3 186711767 186711784 -40812794 + L1MA4 LINE L1 4376 4392 -1754 5496 169 41 17 chr3 186711806 186713450 -40811128 + L1MA4 LINE L1 4612 6294 -6 25 31 0 0 chr3 186713451 186713483 -40811095 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr3 186713656 186713692 -40810886 + AT_rich Low_complexity Low_complexity 1 36 0 1076 56 7 0 chr3 186713879 186714021 -40810557 + L1PA8 LINE L1 6027 6169 -3 604 221 270 18 chr3 186714391 186714613 -40809965 + LTR40a LTR ERVL 242 519 0 491 310 25 21 chr3 186714613 186714855 -40809723 + L1MC4a LINE L1 6603 6845 -963 * 589 232 95 37 chr3 186714847 186715088 -40809490 + L1MC4 LINE L1 7344 7598 -444 320 78 0 0 chr3 186715369 186715420 -40809158 - MADE1 DNA Mariner 0 80 30 1171 237 70 16 chr3 186716922 186717234 -40807344 - MER44D DNA MER2_type 0 609 11 23 0 0 0 chr3 186717502 186717525 -40807053 + AT_rich Low_complexity Low_complexity 1 23 0 717 262 25 60 chr3 186717949 186718296 -40806282 + L1MD2 LINE L1 5975 6328 -31 * 1078 244 100 18 chr3 186718295 186718316 -40806262 - L1 LINE L1 -3544 4021 4003 5119 146 30 0 chr3 186718316 186719453 -40805125 - L1PA13 LINE L1 -6 6157 5017 1078 244 100 18 chr3 186719453 186719978 -40804600 - L1 LINE L1 -3562 4003 3433 4361 125 79 74 chr3 186719981 186721355 -40803223 - pTR5 LTR ERV1 0 2438 743 4353 152 29 134 chr3 186721355 186721633 -40802945 - L1 LINE L1 -4129 3436 3130 897 92 0 0 chr3 186721633 186721752 -40802826 + AluSg/x SINE Alu 177 295 -17 4353 152 29 134 chr3 186721752 186722074 -40802504 - L1 LINE L1 -4435 3130 2776 186 71 0 0 chr3 186722074 186722102 -40802476 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 4353 152 29 134 chr3 186722102 186722767 -40801811 - L1 LINE L1 -4789 2776 2198 3255 269 51 60 chr3 186722761 186723831 -40800747 + L1M4 LINE L1 2740 3818 -2328 * 501 124 11 0 chr3 186723831 186723920 -40800658 + L1MA1 LINE L1 6213 6302 0 3255 269 51 60 chr3 186723920 186725158 -40799420 + L1M4 LINE L1 3818 5027 -1119 1648 228 92 7 chr3 186725712 186726137 -40798441 - MLT1C LTR MaLR -4 463 3 301 153 28 0 chr3 186726442 186726514 -40798064 + (TA)n Simple_repeat Simple_repeat 2 75 0 25 0 0 0 chr3 186726651 186726676 -40797902 + AT_rich Low_complexity Low_complexity 1 25 0 325 272 4 105 chr3 186727500 186727728 -40796850 - L1MC4 LINE L1 -85 7957 7753 236 261 122 17 chr3 186728100 186728215 -40796363 - LTR16A1 LTR ERVL -2 455 329 521 344 133 8 chr3 186729593 186730008 -40794570 - L2 LINE L2 -172 3141 2669 191 297 116 7 chr3 186730058 186730196 -40794382 + MIR SINE MIR 51 203 -59 21 36 0 0 chr3 186730341 186730369 -40794209 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr3 186730398 186730433 -40794145 + AT_rich Low_complexity Low_complexity 1 35 0 526 95 14 0 chr3 186730630 186730704 -40793874 - AluSp/q SINE Alu -22 291 217 365 297 124 22 chr3 186731268 186731453 -40793125 - MIR SINE MIR -57 205 2 189 0 0 0 chr3 186732257 186732278 -40792300 + (T)n Simple_repeat Simple_repeat 1 21 0 321 400 0 14 chr3 186732501 186732641 -40791937 + L2 LINE L2 2910 3047 -266 2069 168 57 7 chr3 186732880 186733286 -40791292 - MSTA LTR MaLR -2 426 1 338 143 38 0 chr3 186733838 186733943 -40790635 + (TA)n Simple_repeat Simple_repeat 1 109 0 210 37 0 0 chr3 186734801 186734828 -40789750 + (TCTCTG)n Simple_repeat Simple_repeat 4 30 0 245 145 24 36 chr3 186734911 186734994 -40789584 + (TTATA)n Simple_repeat Simple_repeat 5 86 0 22 35 0 0 chr3 186735014 186735043 -40789535 + AT_rich Low_complexity Low_complexity 1 29 0 2088 122 7 0 chr3 186735351 186735646 -40788932 - AluSp SINE Alu -16 297 1 1991 245 107 104 chr3 186736329 186737402 -40787176 + L1MC4 LINE L1 6107 7206 -836 358 195 0 0 chr3 186737402 186737478 -40787100 + L1MA3 LINE L1 6229 6305 0 1991 245 107 104 chr3 186737478 186738172 -40786406 + L1MC4 LINE L1 7206 7897 -145 22 56 0 0 chr3 186738184 186738220 -40786358 + AT_rich Low_complexity Low_complexity 1 36 0 2308 130 11 16 chr3 186738225 186738601 -40785977 + THE1C LTR MaLR 1 374 -1 207 69 0 0 chr3 186738646 186738675 -40785903 + (CATATA)n Simple_repeat Simple_repeat 4 32 0 263 275 67 0 chr3 186738678 186738798 -40785780 + L1MC4 LINE L1 7902 8029 -13 537 191 38 0 chr3 186739087 186739192 -40785386 + L1M1 LINE L1 16 124 -7441 7174 158 37 12 chr3 186739199 186739272 -40785306 + L1M1 LINE L1 1100 1170 -6395 2590 99 0 6 chr3 186739272 186739627 -40784951 + THE1A LTR MaLR 1 353 -2 10622 113 23 1 chr3 186739629 186741175 -40783403 + THE1A-int LTR MaLR 1 1580 0 2329 118 11 3 chr3 186741175 186741523 -40783055 + THE1A LTR MaLR 1 351 -4 7174 158 37 12 chr3 186741523 186742659 -40781919 + L1M1 LINE L1 1169 2343 -5222 22 94 0 0 chr3 186742699 186742763 -40781815 + AT_rich Low_complexity Low_complexity 1 64 0 27 29 0 0 chr3 186743452 186743486 -40781092 + AT_rich Low_complexity Low_complexity 1 34 0 1967 173 27 5 chr3 186743613 186743982 -40780596 - MLT1B LTR MaLR 0 390 14 21 0 0 0 chr3 186744028 186744049 -40780529 + AT_rich Low_complexity Low_complexity 1 21 0 315 250 104 10 chr3 186744525 186744733 -40779845 - MLT1D LTR MaLR -196 271 61 599 362 46 21 chr3 186744839 186745165 -40779413 - LTR16A LTR ERVL -101 349 16 240 353 52 26 chr3 186745612 186745765 -40778813 + MER5A DNA MER1_type 21 177 -12 1034 244 119 29 chr3 186745800 186746424 -40778154 - L1MC/D LINE L1 -760 6277 5605 306 0 0 0 chr3 186746433 186746467 -40778111 + (TA)n Simple_repeat Simple_repeat 2 35 0 557 277 24 57 chr3 186746561 186746857 -40777721 - L1MC/D LINE L1 -1328 5613 5328 1536 289 96 34 chr3 186746863 186748138 -40776440 - L1MCc LINE L1 -4741 2200 840 495 251 132 47 chr3 186748481 186748823 -40775755 - L1MCc LINE L1 -6033 390 20 342 0 0 0 chr3 186748963 186749001 -40775577 + (CA)n Simple_repeat Simple_repeat 1 38 0 218 54 0 27 chr3 186749012 186749049 -40775529 + (GA)n Simple_repeat Simple_repeat 1 36 0 271 364 15 38 chr3 186749478 186749610 -40774968 + MER5A DNA MER1_type 61 189 0 6229 162 28 10 chr3 186749930 186750199 -40774379 + L1MA1 LINE L1 4178 4441 -1861 194 62 31 0 chr3 186750199 186750231 -40774347 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 6229 162 28 10 chr3 186750231 186751507 -40773071 + L1MA1 LINE L1 4441 5692 -610 1527 203 43 27 chr3 186751507 186751876 -40772702 - THE1C LTR MaLR 0 375 1 8598 147 25 47 chr3 186751876 186753487 -40771091 - THE1C-int LTR MaLR 0 1580 4 1636 157 57 41 chr3 186753490 186753859 -40770719 - THE1C LTR MaLR 0 375 1 6229 162 28 10 chr3 186753859 186754384 -40770194 + L1MA1 LINE L1 5693 6298 -4 33 0 0 0 chr3 186754384 186754417 -40770161 + AT_rich Low_complexity Low_complexity 1 33 0 23 0 0 0 chr3 186754701 186754724 -40769854 + AT_rich Low_complexity Low_complexity 1 23 0 27 29 0 0 chr3 186754863 186754897 -40769681 + AT_rich Low_complexity Low_complexity 1 34 0 340 254 127 0 chr3 186756623 186756733 -40767845 + L1MC4 LINE L1 6580 6703 -1339 228 176 44 0 chr3 186756734 186756802 -40767776 + (TA)n Simple_repeat Simple_repeat 2 72 0 2545 145 86 0 chr3 186756805 186757281 -40767297 - L1PA16 LINE L1 -7 6159 5643 2077 158 3 3 chr3 186757282 186757629 -40766949 + L1PA16 LINE L1 5323 5669 -497 24 0 0 0 chr3 186757882 186757906 -40766672 + AT_rich Low_complexity Low_complexity 1 24 0 28 61 0 0 chr3 186758479 186758528 -40766050 + AT_rich Low_complexity Low_complexity 1 49 0 268 271 25 57 chr3 186758572 186758694 -40765884 - L1ME LINE L1 -520 5601 5484 26 64 0 0 chr3 186759039 186759086 -40765492 + AT_rich Low_complexity Low_complexity 1 47 0 490 310 181 25 chr3 186760900 186761265 -40763313 - L2 LINE L2 -68 3245 2824 301 289 0 0 chr3 186761575 186761672 -40762906 - L1ME LINE L1 -322 5848 5752 297 250 50 72 chr3 186761691 186761871 -40762707 - L1ME LINE L1 -398 5766 5591 650 235 0 15 chr3 186763873 186764009 -40760569 - MLT1D LTR MaLR -54 451 318 923 212 37 11 chr3 186764058 186764247 -40760331 - AluJo SINE Alu -30 282 89 412 192 13 0 chr3 186764250 186764328 -40760250 - L1MC1 LINE L1 -9 6324 6246 6900 195 53 70 chr3 186764498 186765040 -40759538 + L1MA2 LINE L1 17 567 -6998 1498 117 0 0 chr3 186765040 186765245 -40759333 + AluSg SINE Alu 1 205 -105 6900 195 53 70 chr3 186765245 186766810 -40757768 + L1MA2 LINE L1 567 2385 -5180 2132 67 11 0 chr3 186766810 186767079 -40757499 - AluY SINE Alu -18 293 22 6900 195 53 70 chr3 186767079 186767981 -40756597 + L1MA2 LINE L1 2385 3301 -4264 12167 184 38 23 chr3 186768017 186769910 -40754668 + L1MA2 LINE L1 3844 5706 -2017 1566 192 20 13 chr3 186769910 186770212 -40754366 + AluSx SINE Alu 1 304 -8 12167 184 38 23 chr3 186770212 186772093 -40752485 + L1MA2 LINE L1 5706 7683 -40 1548 132 41 12 chr3 186772093 186772335 -40752243 + AluSg SINE Alu 1 249 -61 260 365 0 10 chr3 186822921 186823017 -40701561 + L2 LINE L2 2946 3040 -273 1023 84 15 0 chr3 186824551 186824682 -40699896 + AluSg SINE Alu 1 133 -177 25 0 0 0 chr3 186824943 186824968 -40699610 + AT_rich Low_complexity Low_complexity 1 25 0 242 76 61 136 chr3 186825037 186825103 -40699475 + L1MCa LINE L1 2006 2066 -4360 200 132 0 26 chr3 186825308 186825346 -40699232 + (TAAAAA)n Simple_repeat Simple_repeat 5 41 0 216 111 0 0 chr3 186825346 186825382 -40699196 + (GA)n Simple_repeat Simple_repeat 2 37 0 357 356 86 6 chr3 186825978 186826152 -40698426 + MIR SINE MIR 32 219 -43 1371 141 48 0 chr3 186826587 186826814 -40697764 - MER7A DNA MER2_type -1 335 98 455 207 35 0 chr3 186827119 186827206 -40697372 - MER7A DNA MER2_type -258 88 1 39 38 0 0 chr3 186827651 186827704 -40696874 + AT_rich Low_complexity Low_complexity 1 53 0 24 77 0 0 chr3 186827864 186827916 -40696662 + AT_rich Low_complexity Low_complexity 1 52 0 993 220 48 0 chr3 186828189 186828416 -40696162 - L1 LINE L1 -1847 4299 4062 26 0 0 0 chr3 186828490 186828516 -40696062 + AT_rich Low_complexity Low_complexity 1 26 0 22 0 0 0 chr3 186828694 186828716 -40695862 + AT_rich Low_complexity Low_complexity 1 22 0 27 49 0 0 chr3 186828910 186828951 -40695627 + AT_rich Low_complexity Low_complexity 1 41 0 296 71 24 0 chr3 186829198 186829240 -40695338 - L1PA16 LINE L1 -9 6157 6115 210 71 0 0 chr3 186829241 186829269 -40695309 + (TC)n Simple_repeat Simple_repeat 1 28 0 433 219 134 17 chr3 186829273 186829392 -40695186 - FLAM_C SINE Alu 0 133 1 1903 160 48 12 chr3 186829392 186829729 -40694849 - L1PA16 LINE L1 -43 6123 5775 3089 189 58 56 chr3 186829870 186831200 -40693378 - L1ME4a LINE L1 -266 5855 4542 289 326 88 56 chr3 186831204 186831544 -40693034 + L2 LINE L2 2456 2806 -508 929 56 0 8 chr3 186831646 186831771 -40692807 + (TTCC)n Simple_repeat Simple_repeat 3 126 0 2261 69 0 3 chr3 186831771 186832059 -40692519 - AluY SINE Alu -24 287 1 23 0 0 0 chr3 186832208 186832231 -40692347 + AT_rich Low_complexity Low_complexity 1 23 0 219 119 45 0 chr3 186832500 186832567 -40692011 + (TA)n Simple_repeat Simple_repeat 1 70 0 211 366 62 31 chr3 186832705 186832866 -40691712 - MIR SINE MIR -52 210 45 207 0 0 0 chr3 186834015 186834038 -40690540 + (T)n Simple_repeat Simple_repeat 1 23 0 285 29 0 0 chr3 186834236 186834270 -40690308 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 21 0 0 0 chr3 186834513 186834534 -40690044 + AT_rich Low_complexity Low_complexity 1 21 0 184 397 83 0 chr3 186834565 186834686 -40689892 + MIR3 SINE MIR 29 159 -49 24 0 0 0 chr3 186834892 186834916 -40689662 + AT_rich Low_complexity Low_complexity 1 24 0 1975 161 3 0 chr3 186834922 186835232 -40689346 + AluSx SINE Alu 1 311 -1 228 160 229 97 chr3 186835551 186835695 -40688883 - L1ME LINE L1 -684 5480 5318 2037 173 52 38 chr3 186838647 186839069 -40685509 + MSTC LTR MaLR 1 428 0 3758 221 68 53 chr3 186839105 186840267 -40684311 + MSTC-int LTR MaLR 37 1218 -362 254 158 0 0 chr3 186840264 186840302 -40684276 - THE1C-int LTR MaLR -625 955 918 * 3872 116 0 98 chr3 186840302 186840595 -40683983 - THE1C-int LTR MaLR -927 653 333 1846 133 46 0 chr3 186840595 186840880 -40683698 - AluSq SINE Alu -15 298 1 3872 116 0 98 chr3 186840880 186841309 -40683269 - THE1C-int LTR MaLR -1247 333 2 1496 198 52 30 chr3 186841310 186841722 -40682856 - THE1C LTR MaLR 0 428 1 25 75 0 0 chr3 186841727 186841780 -40682798 + AT_rich Low_complexity Low_complexity 1 53 0 688 242 106 35 chr3 186842164 186842420 -40682158 - L1ME1 LINE L1 -39 6127 5854 455 276 55 5 chr3 186842425 186842624 -40681954 + L1M4 LINE L1 5074 5282 -864 4071 178 7 22 chr3 186842642 186843495 -40681083 + L1MA3 LINE L1 5466 6305 0 1727 196 3 0 chr3 186843722 186844148 -40680430 - AluJb SINE Alu 0 427 1 23 0 0 0 chr3 186844439 186844462 -40680116 + AT_rich Low_complexity Low_complexity 1 23 0 873 232 0 5 chr3 186844523 186844708 -40679870 - MLT1B LTR MaLR -4 386 203 479 139 47 23 chr3 186844712 186844798 -40679780 - MLT1B LTR MaLR -302 88 1 21 57 0 0 chr3 186845146 186845181 -40679397 + AT_rich Low_complexity Low_complexity 1 35 0 497 270 26 0 chr3 186847269 186847421 -40677157 - L1MD2 LINE L1 -10 6349 6194 1656 273 34 68 chr3 186847433 186848483 -40676095 - L1MDa LINE L1 -5425 1115 1 27 49 0 0 chr3 186848974 186849015 -40675563 + AT_rich Low_complexity Low_complexity 1 41 0 7158 151 22 12 chr3 186849018 186850306 -40674272 + HSMAR2 DNA Mariner 2 1302 0 210 118 0 0 chr3 186850318 186850352 -40674226 + (TATG)n Simple_repeat Simple_repeat 1 34 0 21 82 0 0 chr3 186851347 186851396 -40673182 + AT_rich Low_complexity Low_complexity 1 49 0 4016 155 49 10 chr3 186851938 186852646 -40671932 + MSTA-int LTR MaLR 845 1580 0 1983 157 133 5 chr3 186852646 186853023 -40671555 + MSTA LTR MaLR 1 425 -3 258 32 0 0 chr3 186854340 186854371 -40670207 + (TG)n Simple_repeat Simple_repeat 2 32 0 204 40 0 0 chr3 186854370 186854395 -40670183 + (TA)n Simple_repeat Simple_repeat 1 25 0 * 5095 142 50 16 chr3 186855156 186856065 -40668513 - L1PA16 LINE L1 -1 6165 5227 202 121 33 66 chr3 186856177 186856268 -40668310 + (TATAA)n Simple_repeat Simple_repeat 1 88 0 26 30 0 0 chr3 186856860 186856893 -40667685 + AT_rich Low_complexity Low_complexity 1 33 0 1181 42 0 0 chr3 186856984 186857128 -40667450 - L1PA7 LINE L1 -7 6147 6004 3887 220 39 3 chr3 186857426 186858375 -40666203 - L1 LINE L1 -748 5398 4416 8140 29 0 0 chr3 186858381 186860116 -40664462 - L1PA2 LINE L1 0 6155 4421 4643 11 8 0 chr3 186860116 186860650 -40663928 + L1PA2 LINE L1 3874 4411 -1735 286 258 16 0 chr3 186860663 186860725 -40663853 - MER2 DNA MER2_type 0 345 283 1678 200 44 26 chr3 186860776 186861231 -40663347 - L1 LINE L1 -1722 4424 3962 2577 179 33 20 chr3 186861231 186861621 -40662957 + L1MA9 LINE L1 5404 5804 -508 315 0 0 0 chr3 186861621 186861656 -40662922 + (CA)n Simple_repeat Simple_repeat 1 35 0 2577 179 33 20 chr3 186861656 186861812 -40662766 + L1MA9 LINE L1 5804 5957 -355 496 292 136 38 chr3 186861942 186862206 -40662372 + MER97b DNA MER1_type? 320 609 -444 13186 197 55 8 chr3 186862519 186866133 -40658445 - L1PB1 LINE L1 -1 6866 2815 396 0 0 0 chr3 186866133 186866177 -40658401 + (TA)n Simple_repeat Simple_repeat 2 45 0 13186 197 55 8 chr3 186866177 186867985 -40656593 - L1PB1 LINE L1 -4052 2815 1093 2392 253 156 11 chr3 186867989 186868902 -40655676 - L1PB1 LINE L1 -5818 1045 1 951 310 36 29 chr3 186872190 186872609 -40651969 + L1ME3 LINE L1 215 636 -5760 * 3645 196 46 4 chr3 186872603 186873454 -40651124 + L1PB4 LINE L1 4411 5330 -826 192 40 0 0 chr3 186873454 186873479 -40651099 + (CAA)n Simple_repeat Simple_repeat 1 25 0 3645 196 46 4 chr3 186873479 186873838 -40650740 + L1PB4 LINE L1 5330 5672 -484 392 143 14 0 chr3 186873864 186873934 -40650644 - L1 LINE L1 -1520 4626 4556 660 152 0 0 chr3 186873939 186874044 -40650534 + L1PB4 LINE L1 6039 6143 -13 418 293 54 34 chr3 186874066 186874271 -40650307 + L1ME3 LINE L1 639 847 -5549 * 1559 268 44 54 chr3 186874270 186874798 -40649780 + L1M4 LINE L1 2944 3461 -2685 1153 241 60 35 chr3 186874798 186875196 -40649382 - MER92A LTR ERV1 0 412 5 1559 268 44 54 chr3 186875196 186875578 -40649000 + L1M4 LINE L1 3461 3845 -2301 8538 213 40 28 chr3 186875598 186876290 -40648288 + L1MC3 LINE L1 5525 6208 -1577 2205 229 25 14 chr3 186876290 186876840 -40647738 - LTR38 LTR ERV1 0 556 1 8538 213 40 28 chr3 186876840 186878375 -40646203 + L1MC3 LINE L1 6208 7777 -8 285 225 42 42 chr3 186878361 186878481 -40646097 + L1M4 LINE L1 3829 3948 -2198 * 441 0 0 0 chr3 186878527 186878576 -40646002 + (TG)n Simple_repeat Simple_repeat 2 50 0 183 129 0 0 chr3 186879638 186879669 -40644909 + (CA)n Simple_repeat Simple_repeat 2 32 0 1359 215 95 34 chr3 186879745 186880094 -40644484 + MLT1A2 LTR MaLR 1 370 -4 315 0 0 0 chr3 186880369 186880404 -40644174 + (TG)n Simple_repeat Simple_repeat 2 36 0 7173 157 19 25 chr3 186880807 186881148 -40643430 + HSMAR2 DNA Mariner 1 342 -960 349 117 0 17 chr3 186881148 186881208 -40643370 - L1PB3 LINE L1 -7 6147 6089 7173 157 19 25 chr3 186881208 186882169 -40642409 + HSMAR2 DNA Mariner 342 1296 -6 1814 171 0 0 chr3 186882884 186883183 -40641395 - AluSx SINE Alu -13 299 1 22 0 0 0 chr3 186884597 186884619 -40639959 + AT_rich Low_complexity Low_complexity 1 22 0 419 35 18 0 chr3 186885107 186885164 -40639414 + (TG)n Simple_repeat Simple_repeat 1 58 0 1364 197 29 42 chr3 186885306 186885615 -40638963 + AluJo SINE Alu 1 305 -7 26 50 0 0 chr3 186885653 186885693 -40638885 + AT_rich Low_complexity Low_complexity 1 40 0 573 264 44 48 chr3 186885768 186885915 -40638663 + L1ME3 LINE L1 3015 3162 -3053 3827 114 9 51 chr3 186885915 186886547 -40638031 + LTR14B LTR ERVK 3 608 0 573 264 44 48 chr3 186886547 186886672 -40637906 + L1ME3 LINE L1 3162 3286 -2929 1079 253 61 55 chr3 186886747 186887242 -40637336 + L1ME3 LINE L1 5696 6193 -38 301 331 40 47 chr3 186887525 186887673 -40636905 + L1ME LINE L1 5531 5677 -444 26 64 0 0 chr3 186887706 186887753 -40636825 + AT_rich Low_complexity Low_complexity 1 47 0 26 30 0 0 chr3 186888671 186888704 -40635874 + AT_rich Low_complexity Low_complexity 1 33 0 430 168 0 20 chr3 186888742 186888843 -40635735 + CT-rich Low_complexity Low_complexity 2 100 0 2792 221 130 39 chr3 186890330 186890627 -40633951 - L1MC3 LINE L1 -392 7393 7124 450 53 0 0 chr3 186890627 186890684 -40633894 + (TA)n Simple_repeat Simple_repeat 2 58 0 2792 221 130 39 chr3 186890684 186891254 -40633324 - L1MC3 LINE L1 -661 7124 6447 4707 139 31 9 chr3 186891254 186892017 -40632561 - LTR17 LTR ERV1 0 780 1 2347 55 3 0 chr3 186892017 186892308 -40632270 - HERV17 LTR ERV1 0 8626 8335 286 77 0 0 chr3 186892298 186892337 -40632241 - HERV17 LTR ERV1 -1078 7548 7510 * 27170 65 2 6 chr3 186892330 186895790 -40628788 - HERV17 LTR ERV1 -2607 6019 2574 3383 84 13 0 chr3 186895784 186896246 -40628332 - HERV17 LTR ERV1 -6622 2004 1537 * 5289 103 33 9 chr3 186896427 186897236 -40627342 - HERV17 LTR ERV1 -7089 1537 709 1608 67 0 53 chr3 186897502 186897727 -40626851 - HERV17 LTR ERV1 -7917 709 497 585 94 0 12 chr3 186897720 186897805 -40626773 - LTR17 LTR ERV1 -696 84 1 * 2763 174 39 23 chr3 186897933 186898531 -40626047 + Tigger3(Golem) DNA MER2_type 2423 3029 0 30 77 0 0 chr3 186900604 186900669 -40623909 + AT_rich Low_complexity Low_complexity 1 65 0 22 56 0 0 chr3 186902185 186902221 -40622357 + AT_rich Low_complexity Low_complexity 1 36 0 4123 192 33 15 chr3 186902221 186903328 -40621250 - L1MB7 LINE L1 -16 6168 4992 722 330 109 28 chr3 186903812 186904608 -40619970 + L2 LINE L2 2450 3312 -1 286 81 0 0 chr3 186904682 186904763 -40619815 - AluSp/q SINE Alu 0 328 248 243 329 66 20 chr3 186905369 186905521 -40619057 + MIR SINE MIR 68 226 -36 1840 128 138 54 chr3 186905564 186905917 -40618661 + MSTA LTR MaLR 1 392 -36 2016 128 0 0 chr3 186905917 186906335 -40618243 - AluSx SINE Alu 0 418 1 1840 128 138 54 chr3 186906335 186906371 -40618207 + MSTA LTR MaLR 392 424 -4 282 283 66 75 chr3 186908080 186908547 -40616031 + L1MEd LINE L1 749 1211 -4908 24 32 0 0 chr3 186908602 186908633 -40615945 + AT_rich Low_complexity Low_complexity 1 31 0 244 237 0 0 chr3 186908848 186908907 -40615671 + L1ME LINE L1 353 411 -5961 28 48 0 0 chr3 186908907 186908949 -40615629 + AT_rich Low_complexity Low_complexity 1 42 0 254 274 77 29 chr3 186909645 186910061 -40614517 + L1ME LINE L1 1029 1411 -4973 311 336 5 5 chr3 186910133 186910344 -40614234 + L1ME LINE L1 1774 1984 -4579 421 297 90 29 chr3 186910360 186910993 -40613585 + L1ME LINE L1 2042 2673 -3709 1809 122 42 18 chr3 186911005 186911291 -40613287 + AluSc SINE Alu 1 293 -16 636 275 110 21 chr3 186911493 186912013 -40612565 + L1ME LINE L1 3070 3635 -2747 566 256 79 0 chr3 186912087 186912251 -40612327 - MER58A DNA MER1_type -3 221 45 4196 187 93 104 chr3 186912268 186913295 -40611283 + L1MC1 LINE L1 388 1425 -5001 1978 143 3 0 chr3 186913295 186913602 -40610976 + AluSx SINE Alu 3 310 -2 4196 187 93 104 chr3 186913602 186914024 -40610554 + L1MC1 LINE L1 1425 1820 -4606 1906 116 4 0 chr3 186914024 186914291 -40610287 + AluSp SINE Alu 45 312 -1 4196 187 93 104 chr3 186914291 186914466 -40610112 + L1MC1 LINE L1 1820 1995 -4431 * 4960 238 43 31 chr3 186914463 186917173 -40607405 + L1MC1 LINE L1 3705 6439 -174 2251 218 68 134 chr3 186917173 186918347 -40606231 - MER52A LTR ERV1 0 1755 659 757 211 12 18 chr3 186918353 186918524 -40606054 + L1MC1 LINE L1 6444 6613 0 234 62 0 0 chr3 186920128 186920160 -40604418 + (T)n Simple_repeat Simple_repeat 1 32 0 1498 143 0 0 chr3 186920167 186920384 -40604194 - AluSx SINE Alu -95 217 1 635 253 28 51 chr3 186920401 186920684 -40603894 + L1M4 LINE L1 4187 4471 -1675 245 315 11 0 chr3 186920790 186920864 -40603714 + MIR SINE MIR 35 111 -104 1602 201 78 88 chr3 186920909 186921406 -40603172 - MLT1D LTR MaLR -11 494 3 274 236 56 0 chr3 186921509 186921670 -40602908 + (TA)n Simple_repeat Simple_repeat 2 171 0 24 32 0 0 chr3 186921696 186921727 -40602851 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 186923329 186923351 -40601227 + AT_rich Low_complexity Low_complexity 1 22 0 191 318 182 20 chr3 186923581 186923729 -40600849 + MIR SINE MIR 18 189 -73 27 0 0 0 chr3 186924424 186924451 -40600127 + AT_rich Low_complexity Low_complexity 1 27 0 836 235 14 27 chr3 186924770 186924991 -40599587 + MER20 DNA MER1_type 2 219 0 420 305 111 42 chr3 186925904 186926452 -40598126 + HAL1b LINE L1 348 933 -415 25 31 0 0 chr3 186928349 186928381 -40596197 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr3 186929313 186929339 -40595239 + AT_rich Low_complexity Low_complexity 1 26 0 222 118 0 0 chr3 186929991 186930025 -40594553 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 1469 140 0 0 chr3 186930027 186930241 -40594337 - AluSg/x SINE Alu -25 287 74 21 0 0 0 chr3 186930935 186930956 -40593622 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 186931851 186931874 -40592704 + AT_rich Low_complexity Low_complexity 1 23 0 360 321 172 3 chr3 186932332 186932693 -40591885 - L1ME LINE L1 -457 5713 5292 2548 280 40 10 chr3 186932942 186933646 -40590932 + L1MA4 LINE L1 1217 1941 -5555 2207 281 61 18 chr3 186933927 186935551 -40589027 + L1MA4 LINE L1 2259 3860 -3705 807 244 24 5 chr3 186935561 186935766 -40588812 + MER2 DNA MER2_type 2 210 -135 1347 259 13 15 chr3 186935873 186936271 -40588307 + L1MA4 LINE L1 3877 4273 -3292 785 243 46 0 chr3 186936272 186936445 -40588133 - Tigger3(Golem) DNA MER2_type -2 3027 2847 746 211 110 0 chr3 186936445 186936663 -40587915 + L1MA4 LINE L1 4291 4532 -3033 * 2452 208 31 3 chr3 186936660 186937231 -40587347 + L1MA4 LINE L1 5141 5727 -1838 5368 37 1 0 chr3 186937231 186937881 -40586697 + L1PA4 LINE L1 5505 6155 0 1113 149 131 9 chr3 186937881 186938095 -40586483 + MSTA LTR MaLR 189 428 0 3392 189 46 4 chr3 186938095 186938837 -40585741 + L1MA4 LINE L1 6776 7548 -171 900 223 17 22 chr3 186938865 186939220 -40585358 - MSTB LTR MaLR 0 428 1 7994 200 25 13 chr3 186939220 186940311 -40584267 - MSTB-int LTR MaLR 0 1651 533 2113 133 0 0 chr3 186940311 186940613 -40583965 + AluSc SINE Alu 1 302 -7 7994 200 25 13 chr3 186940613 186941153 -40583425 - MSTB-int LTR MaLR -1118 533 1 1892 191 106 5 chr3 186941153 186941540 -40583038 - MSTB LTR MaLR 0 426 1 662 141 12 0 chr3 186941540 186941675 -40582903 + L1MA3 LINE L1 6158 6296 -4 39 22 0 0 chr3 186941678 186941724 -40582854 + AT_rich Low_complexity Low_complexity 1 46 0 1022 245 4 15 chr3 186941831 186941879 -40582699 + L1P LINE L1 4282 4329 -1817 2731 13 0 0 chr3 186941879 186942182 -40582396 - AluY SINE Alu -8 303 1 1022 245 4 15 chr3 186942182 186942402 -40582176 + L1P LINE L1 4329 4547 -1599 463 305 58 28 chr3 186942543 186942943 -40581635 - L1M4 LINE L1 -1072 5074 4663 25 31 0 0 chr3 186943201 186943233 -40581345 + AT_rich Low_complexity Low_complexity 1 32 0 243 170 0 0 chr3 186943804 186943851 -40580727 + (TG)n Simple_repeat Simple_repeat 1 47 0 297 256 122 12 chr3 186943943 186944025 -40580553 + MLT1H1 LTR MaLR 91 181 -374 1913 281 35 27 chr3 186944443 186945083 -40579495 + L1PA12 LINE L1 8 1466 -6115 1954 109 0 32 chr3 186945124 186945409 -40579169 - AluSx SINE Alu -32 280 5 472 365 21 0 chr3 186945412 186945604 -40578974 + L1PA14 LINE L1 1181 1376 -6205 1084 272 99 51 chr3 186946910 186947130 -40577448 - L1MC4a LINE L1 -912 6896 6688 207 0 0 0 chr3 186947130 186947153 -40577425 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1084 272 99 51 chr3 186947153 186947711 -40576867 - L1MC4a LINE L1 -1120 6688 6081 21 36 0 0 chr3 186947821 186947849 -40576729 + AT_rich Low_complexity Low_complexity 1 28 0 1801 321 28 30 chr3 186948443 186949203 -40575375 + L1M3b LINE L1 33 790 -5523 7593 236 144 22 chr3 186949732 186950338 -40574240 + L1PA14 LINE L1 2001 2532 -5061 5495 116 33 9 chr3 186950338 186951554 -40573024 + L1PA14 LINE L1 6365 7599 0 7593 236 144 22 chr3 186951554 186954440 -40570138 + L1PA14 LINE L1 2532 5065 -2528 1736 184 39 6 chr3 186954440 186954776 -40569802 - MER7A DNA MER2_type -1 345 1 7593 236 144 22 chr3 186954776 186954900 -40569678 + L1PA14 LINE L1 5065 5173 -2420 3706 204 13 17 chr3 186954900 186955718 -40568860 - L1MA7 LINE L1 -1 6290 5476 7593 236 144 22 chr3 186955718 186955747 -40568831 + L1PA14 LINE L1 5173 5197 -2396 4089 27 0 0 chr3 186955747 186956222 -40568356 - L1PA3 LINE L1 -5 6150 5676 7593 236 144 22 chr3 186956222 186957368 -40567210 + L1PA3 LINE L1 5197 7114 -479 921 175 6 0 chr3 186957362 186957539 -40567039 - L1MA7 LINE L1 -797 5494 5317 * 2600 148 47 78 chr3 186957534 186957737 -40566841 - L1PB4 LINE L1 -1 6155 5947 207 0 0 0 chr3 186957737 186957760 -40566818 + (TC)n Simple_repeat Simple_repeat 2 24 0 1663 164 7 4 chr3 186957763 186958043 -40566535 - AluSx SINE Alu -31 281 1 2600 148 47 78 chr3 186958043 186958388 -40566190 - L1PB4 LINE L1 -211 5945 5620 1196 233 26 12 chr3 186958386 186958830 -40565748 - L1M4 LINE L1 -847 5299 4925 * 22 0 0 0 chr3 186959968 186959990 -40564588 + AT_rich Low_complexity Low_complexity 1 22 0 201 304 0 0 chr3 186960328 186960374 -40564204 + MER5A DNA MER1_type 95 140 -49 21 0 0 0 chr3 186961564 186961585 -40562993 + AT_rich Low_complexity Low_complexity 1 21 0 222 379 71 7 chr3 186963356 186963496 -40561082 - MIR3 SINE MIR -40 168 20 621 249 122 0 chr3 186964329 186964534 -40560044 - MER96B DNA MER1_type? -183 234 5 2209 65 7 0 chr3 186964728 186965007 -40559571 + AluY SINE Alu 1 281 -30 15749 110 4 12 chr3 186965107 186967538 -40557040 + HERVH LTR ERV1 614 2984 -4729 5172 113 43 14 chr3 186967513 186968357 -40556221 + HERVH LTR ERV1 3126 3993 -3720 * 7571 259 74 42 chr3 186969252 186972056 -40552522 + L1MA3 LINE L1 10 2902 -3947 9433 211 42 45 chr3 186972109 186975327 -40549251 + L1MA3 LINE L1 3258 6496 -511 195 100 0 0 chr3 186975327 186975357 -40549221 + (CA)n Simple_repeat Simple_repeat 2 31 0 9433 211 42 45 chr3 186975357 186975688 -40548890 + L1MA3 LINE L1 6496 6826 -181 410 205 18 18 chr3 186975685 186975797 -40548781 + L1MA4A LINE L1 6182 6293 -10 * 459 0 0 0 chr3 186975803 186975854 -40548724 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 22 70 0 0 chr3 186976097 186976140 -40548438 + AT_rich Low_complexity Low_complexity 1 43 0 25 0 0 0 chr3 186976485 186976510 -40548068 + AT_rich Low_complexity Low_complexity 1 25 0 312 309 98 47 chr3 186976633 186977080 -40547498 + L1 LINE L1 2137 2606 -3540 4135 172 70 1 chr3 186977084 186978511 -40546067 - L1MA4 LINE L1 -433 5867 4349 787 105 16 0 chr3 186978592 186978716 -40545862 + L1MA6 LINE L1 6150 6275 -25 24 0 0 0 chr3 186978733 186978757 -40545821 + AT_rich Low_complexity Low_complexity 1 24 0 2047 182 42 52 chr3 186978948 186979469 -40545109 - L1MA6 LINE L1 -9 6291 5776 2654 184 2 21 chr3 186979630 186980203 -40544375 - L1MA6 LINE L1 -507 5793 5232 3523 199 35 19 chr3 186980203 186981057 -40543521 + L1MA6 LINE L1 4366 5233 -913 2466 184 70 14 chr3 186981338 186981891 -40542687 + L1MD2 LINE L1 5685 6268 -91 25 31 0 0 chr3 186981902 186981934 -40542644 + AT_rich Low_complexity Low_complexity 1 32 0 478 223 11 0 chr3 186982609 186982703 -40541875 - FLAM_C SINE Alu -17 126 32 32 0 0 0 chr3 186983135 186983167 -40541411 + AT_rich Low_complexity Low_complexity 1 32 0 1238 175 14 5 chr3 186983167 186983390 -40541188 - L1PA16 LINE L1 -10 6156 5932 3911 157 17 37 chr3 186983390 186984399 -40540179 + L1PA16 LINE L1 4978 5949 -217 761 249 75 63 chr3 186985091 186985504 -40539074 - LTR52 LTR ERVL -2 419 2 231 275 99 53 chr3 186985774 186985905 -40538673 + MIR SINE MIR 72 208 -54 22 0 0 0 chr3 186986809 186986831 -40537747 + AT_rich Low_complexity Low_complexity 1 22 0 463 141 0 24 chr3 186987451 186987536 -40537042 - AluJ/FRAM SINE Alu -5 307 225 315 304 60 10 chr3 186988137 186988338 -40536240 + L1MEc LINE L1 719 929 -5467 22 0 0 0 chr3 186988524 186988546 -40536032 + AT_rich Low_complexity Low_complexity 1 22 0 22 70 0 0 chr3 186988832 186988875 -40535703 + AT_rich Low_complexity Low_complexity 1 43 0 2735 178 68 2 chr3 186989282 186989826 -40534752 - LTR19B LTR ERV1 0 580 1 1810 139 20 14 chr3 186990559 186990853 -40533725 - AluSx SINE Alu -16 296 1 37 0 0 0 chr3 186990990 186991027 -40533551 + AT_rich Low_complexity Low_complexity 1 37 0 26 88 0 0 chr3 186991249 186991317 -40533261 + AT_rich Low_complexity Low_complexity 1 68 0 42 36 0 0 chr3 186991959 186992015 -40532563 + AT_rich Low_complexity Low_complexity 1 56 0 35218 111 23 9 chr3 186992076 186997241 -40527337 - HERV9 LTR ERV1 -3111 5288 52 671 135 0 0 chr3 186997258 186997354 -40527224 - LTR12 LTR ERV1 -2 712 617 274 272 58 0 chr3 186997354 186997457 -40527121 - LTR30 LTR ERV1 -70 652 544 823 161 51 102 chr3 186997459 186997740 -40526838 - LTR12 LTR ERV1 -440 1528 54 240 269 0 0 chr3 186997740 186997792 -40526786 - LTR30 LTR ERV1 -670 52 1 844 182 0 19 chr3 186998809 186998963 -40525615 - LTR32 LTR ERVL -2 469 319 1927 185 25 0 chr3 186999014 186999338 -40525240 - LTR32 LTR ERVL -125 346 15 4210 250 85 39 chr3 186999758 187001752 -40522826 + L1MCa LINE L1 25 1926 -4500 1738 164 16 16 chr3 187001752 187002057 -40522521 + AluSx SINE Alu 1 305 -7 4210 250 85 39 chr3 187002057 187002531 -40522047 + L1MCa LINE L1 1926 2377 -4049 1838 189 13 23 chr3 187002531 187002922 -40521656 + MLT1B LTR MaLR 4 390 0 4210 250 85 39 chr3 187002922 187003229 -40521349 + L1MCa LINE L1 2377 2668 -3758 2344 100 0 0 chr3 187003229 187003540 -40521038 + AluY SINE Alu 1 311 0 4210 250 85 39 chr3 187003540 187003651 -40520927 + L1MCa LINE L1 2668 3207 -3219 339 289 78 21 chr3 187004188 187004330 -40520248 - L2 LINE L2 -43 3270 3121 356 351 32 19 chr3 187004447 187004601 -40519977 + L2 LINE L2 3117 3272 0 1431 211 10 20 chr3 187005069 187005368 -40519210 + AluJo SINE Alu 3 298 -14 289 313 0 0 chr3 187005368 187005448 -40519130 + GA-rich Low_complexity Low_complexity 1 80 0 5882 170 57 35 chr3 187005552 187005758 -40518820 + Tigger2 DNA MER2_type 1 201 -2517 2225 117 0 7 chr3 187005758 187006066 -40518512 - AluSc SINE Alu -3 306 1 5882 170 57 35 chr3 187006066 187007130 -40517448 + Tigger2 DNA MER2_type 201 1299 -1419 1150 204 22 66 chr3 187007130 187007448 -40517130 + LOR1a LTR ERV1 1 304 -193 319 271 19 28 chr3 187007543 187007650 -40516928 + LOR1b LTR ERV1 356 461 0 * 6642 164 19 101 chr3 187007650 187008666 -40515912 + Tigger2 DNA MER2_type 1296 2143 -575 1764 157 70 20 chr3 187008666 187009023 -40515555 + THE1C LTR MaLR 1 375 0 6642 164 19 101 chr3 187009023 187009556 -40515022 + Tigger2 DNA MER2_type 2143 2718 0 302 200 38 25 chr3 187009978 187010058 -40514520 + Tigger2 DNA MER2_type 10 90 -2628 6936 201 64 54 chr3 187010130 187011781 -40512797 + MER52A LTR ERV1 1 1754 -1 16592 178 40 15 chr3 187012084 187015701 -40508877 + L1PBa LINE L1 3 3527 -3335 2062 133 0 0 chr3 187015701 187015980 -40508598 + AluSx SINE Alu 4 282 -30 198 0 0 0 chr3 187015984 187016006 -40508572 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 16592 178 40 15 chr3 187016006 187017440 -40507138 + L1PBa LINE L1 3529 5188 -1674 243 232 152 0 chr3 187017563 187017688 -40506890 + L1PB1 LINE L1 4014 4157 -1989 3975 185 29 8 chr3 187017751 187019274 -40505304 + L1PB1 LINE L1 4235 5791 -360 216 151 38 0 chr3 187019276 187019329 -40505249 + (TA)n Simple_repeat Simple_repeat 1 55 0 1057 154 11 21 chr3 187019329 187019517 -40505061 + L1PB1 LINE L1 5782 5967 -184 1733 145 50 123 chr3 187019517 187020015 -40504563 + LTR22B LTR ERVK 1 462 -30 819 213 35 0 chr3 187020022 187020196 -40504382 - MLT2B3 LTR ERVL -374 180 1 305 333 43 47 chr3 187020253 187020532 -40504046 - L1MEc LINE L1 -6029 367 90 2200 101 14 0 chr3 187021488 187021785 -40502793 - AluSx SINE Alu -11 301 1 22 35 0 0 chr3 187021790 187021819 -40502759 + AT_rich Low_complexity Low_complexity 1 29 0 22 0 0 0 chr3 187022717 187022739 -40501839 + AT_rich Low_complexity Low_complexity 1 22 0 35 0 0 0 chr3 187023385 187023420 -40501158 + AT_rich Low_complexity Low_complexity 1 35 0 300 330 19 0 chr3 187023435 187023538 -40501040 - MLT1L LTR MaLR -389 226 122 1506 183 19 0 chr3 187024099 187024356 -40500222 + L1M1 LINE L1 42 303 -7262 * 4656 96 4 4 chr3 187024345 187025032 -40499546 - L1P LINE L1 -975 5171 4485 6494 63 26 8 chr3 187025048 187025924 -40498654 + L1PA7 LINE L1 5255 6146 -8 18094 170 40 18 chr3 187025925 187029096 -40495482 + L1M1 LINE L1 291 3390 -4175 183 100 0 0 chr3 187029096 187029126 -40495452 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 18094 170 40 18 chr3 187029126 187029190 -40495388 + L1M1 LINE L1 3390 3451 -4114 1545 91 0 22 chr3 187029190 187029420 -40495158 + AluY SINE Alu 85 309 -2 18094 170 40 18 chr3 187029420 187029856 -40494722 + L1M1 LINE L1 3451 4041 -3524 618 82 0 27 chr3 187030254 187030364 -40494214 + (TA)n Simple_repeat Simple_repeat 2 108 0 306 0 0 0 chr3 187030365 187030399 -40494179 + (T)n Simple_repeat Simple_repeat 1 34 0 189 0 0 0 chr3 187031516 187031537 -40493041 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 873 193 62 5 chr3 187032179 187032371 -40492207 + MER49 LTR ERV1 5 207 -716 1143 222 162 31 chr3 187032387 187032843 -40491735 + MER52A LTR ERV1 221 609 -687 444 138 0 0 chr3 187032841 187032906 -40491672 + THE1C LTR MaLR 311 375 0 * 420 207 105 63 chr3 187032971 187033134 -40491444 + L1MCa LINE L1 569 719 -5326 1694 225 51 18 chr3 187033156 187033609 -40490969 + L1MB7 LINE L1 5679 6146 -38 1561 250 93 58 chr3 187033652 187034909 -40489669 + L1MCa LINE L1 707 2207 -4538 2035 226 50 6 chr3 187035048 187035531 -40489047 + L1MC3 LINE L1 7265 7768 -17 278 259 0 9 chr3 187035838 187035950 -40488628 + (TA)n Simple_repeat Simple_repeat 1 111 0 403 304 152 0 chr3 187036373 187036577 -40488001 - LTR16C LTR ERVL 0 491 257 24 0 0 0 chr3 187036797 187036821 -40487757 + AT_rich Low_complexity Low_complexity 1 24 0 796 59 0 0 chr3 187036891 187036993 -40487585 + L1P LINE L1 2967 3068 -3078 22 56 0 0 chr3 187037686 187037722 -40486856 + AT_rich Low_complexity Low_complexity 1 36 0 191 351 101 0 chr3 187038336 187038484 -40486094 - MIR SINE MIR -16 246 84 2833 188 39 0 chr3 187038806 187039317 -40485261 + MSTB-int LTR MaLR 1121 1651 0 2024 189 36 19 chr3 187039319 187039736 -40484842 + MSTB LTR MaLR 3 426 0 239 54 27 0 chr3 187040726 187040763 -40483815 + (CAAAA)n Simple_repeat Simple_repeat 2 39 0 234 192 0 0 chr3 187040849 187040901 -40483677 + (TG)n Simple_repeat Simple_repeat 2 53 0 195 69 0 0 chr3 187041254 187041283 -40483295 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 1724 171 0 0 chr3 187041462 187041748 -40482830 + AluSx SINE Alu 1 286 -26 22 0 0 0 chr3 187041752 187041774 -40482804 + AT_rich Low_complexity Low_complexity 1 22 0 2689 26 0 0 chr3 187042093 187042405 -40482173 + AluYb8 SINE Alu 1 312 -6 25 0 0 0 chr3 187042857 187042882 -40481696 + AT_rich Low_complexity Low_complexity 1 25 0 15258 48 7 1 chr3 187044116 187046799 -40477779 - L1PA5 LINE L1 -6 6148 3455 217 347 20 46 chr3 187048051 187048247 -40476331 + L2 LINE L2 2038 2228 -1086 25 51 0 0 chr3 187048316 187048355 -40476223 + AT_rich Low_complexity Low_complexity 1 39 0 2759 128 37 0 chr3 187048376 187048783 -40475795 + MLT2A2 LTR ERVL 1 422 -31 318 57 189 0 chr3 187048811 187048864 -40475714 + MLT2A2 LTR ERVL 383 445 -8 4804 83 9 0 chr3 187048868 187049517 -40475061 + HERVL-A2 LTR ERVL 1 655 -4999 940 126 60 0 chr3 187049509 187049676 -40474902 + HERVL LTR ERVL 5420 5596 -58 * 258 278 0 26 chr3 187049778 187049893 -40474685 + HERVH LTR ERV1 2873 2984 -4729 * 12247 116 26 36 chr3 187049889 187051922 -40472656 + HERVH LTR ERV1 3138 5149 -2564 1361 122 17 38 chr3 187051902 187052139 -40472439 + HERVH LTR ERV1 5588 5819 -1894 * 2423 95 48 13 chr3 187052137 187052516 -40472062 + HERVH LTR ERV1 7322 7713 0 2652 82 92 5 chr3 187052516 187052928 -40471650 + LTR7 LTR ERV1 1 448 -2 2700 189 73 37 chr3 187053530 187054002 -40470576 + MER67C LTR ERV1 14 519 -191 2291 94 0 3 chr3 187054002 187054309 -40470269 + AluY SINE Alu 1 306 -5 2700 189 73 37 chr3 187054309 187054509 -40470069 + MER67C LTR ERV1 519 710 0 22 0 0 0 chr3 187054672 187054694 -40469884 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr3 187054724 187054761 -40469817 + AT_rich Low_complexity Low_complexity 1 37 0 984 125 17 23 chr3 187054947 187055123 -40469455 - MER30 DNA MER1_type -55 175 1 1769 166 23 65 chr3 187055143 187055614 -40468964 + MLT2A2 LTR ERVL 1 455 -99 9504 119 2 4 chr3 187055614 187056970 -40467608 + HERVL-A2 LTR ERVL 4299 5652 -2 2010 160 37 34 chr3 187056972 187057529 -40467049 + MLT2A2 LTR ERVL 1 554 0 25 75 0 0 chr3 187057771 187057824 -40466754 + AT_rich Low_complexity Low_complexity 1 53 0 200 200 0 0 chr3 187057916 187057951 -40466627 + (TATG)n Simple_repeat Simple_repeat 2 36 0 1751 172 6 16 chr3 187058170 187058490 -40466088 + Tigger3(Golem) DNA MER2_type 2 318 -2711 637 221 33 0 chr3 187058502 187058624 -40465954 - Tigger5 DNA MER2_type -2194 129 4 619 278 148 11 chr3 187058857 187059141 -40465437 - L1ME2 LINE L1 -1 6163 5841 1226 202 61 72 chr3 187059149 187059525 -40465053 - LTR8A LTR ERV1 0 727 356 490 167 67 0 chr3 187059525 187059615 -40464963 - LTR8 LTR ERV1 -595 96 1 1251 264 74 8 chr3 187059617 187060090 -40464488 - L1ME2 LINE L1 -330 5834 5331 599 261 64 7 chr3 187060131 187060414 -40464164 - L1ME2 LINE L1 -2764 3382 3084 608 167 42 35 chr3 187060450 187060594 -40463984 - MER51-int LTR ERV1 -3655 4161 4017 799 239 128 0 chr3 187060607 187060912 -40463666 - L1ME2 LINE L1 -3077 3069 2726 738 177 8 0 chr3 187060931 187061061 -40463517 - MER50 LTR ERV1 -29 705 575 2109 88 3 50 chr3 187061475 187061792 -40462786 - AluSp SINE Alu -11 302 1 245 229 0 33 chr3 187061923 187061984 -40462594 + CT-rich Low_complexity Low_complexity 4 62 0 718 264 71 95 chr3 187062169 187062640 -40461938 + MER110A LTR ERV1 44 484 0 628 301 17 6 chr3 187062741 187062917 -40461661 + MER45A DNA AcHobo 1 178 0 383 281 43 24 chr3 187063206 187063370 -40461208 + MER110-int LTR ERV1 3274 3440 -1207 23 33 0 0 chr3 187063458 187063488 -40461090 + AT_rich Low_complexity Low_complexity 1 30 0 38 85 0 0 chr3 187064201 187064295 -40460283 + AT_rich Low_complexity Low_complexity 1 94 0 364 294 176 5 chr3 187064319 187064506 -40460072 - MIR SINE MIR -38 224 6 222 203 27 14 chr3 187065067 187065141 -40459437 + (TATAA)n Simple_repeat Simple_repeat 5 79 0 23 78 0 0 chr3 187065518 187065569 -40459009 + AT_rich Low_complexity Low_complexity 1 51 0 245 229 10 73 chr3 187066095 187066191 -40458387 + L1MC4 LINE L1 6614 6703 -1339 364 225 0 18 chr3 187066195 187066306 -40458272 + (TA)n Simple_repeat Simple_repeat 2 110 0 197 237 0 13 chr3 187066336 187066412 -40458166 + (TATG)n Simple_repeat Simple_repeat 2 76 0 1744 127 3 39 chr3 187066460 187066744 -40457834 + AluSx SINE Alu 35 308 -4 23 0 0 0 chr3 187067371 187067394 -40457184 + AT_rich Low_complexity Low_complexity 1 23 0 190 243 81 54 chr3 187067857 187067931 -40456647 + L2 LINE L2 3188 3263 -9 405 39 0 0 chr3 187067930 187067981 -40456597 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 50 51 0 0 chr3 187068148 187068226 -40456352 + AT_rich Low_complexity Low_complexity 1 78 0 2747 214 58 34 chr3 187069294 187070098 -40454480 - LTR1B LTR ERV1 0 826 3 335 256 68 60 chr3 187070531 187070664 -40453914 + L2 LINE L2 1168 1301 -2013 1710 138 72 39 chr3 187070666 187071027 -40453551 - THE1C LTR MaLR 0 375 3 9266 127 52 14 chr3 187071027 187072548 -40452030 - THE1C-int LTR MaLR 0 1580 1 1739 150 70 25 chr3 187072548 187072907 -40451671 - THE1C LTR MaLR 0 375 1 216 135 0 0 chr3 187073149 187073186 -40451392 + (CA)n Simple_repeat Simple_repeat 1 37 0 49 76 0 0 chr3 187073497 187073602 -40450976 + AT_rich Low_complexity Low_complexity 1 105 0 729 210 34 6 chr3 187073715 187073891 -40450687 + MER3 DNA MER1_type 11 191 -18 486 276 31 25 chr3 187074036 187074232 -40450346 + LTR16B LTR ERVL 268 464 0 22 0 0 0 chr3 187074618 187074640 -40449938 + AT_rich Low_complexity Low_complexity 1 22 0 747 283 69 88 chr3 187075891 187076368 -40448210 + L2 LINE L2 2841 3308 -5 248 326 31 31 chr3 187076435 187076533 -40448045 - L2 LINE L2 -32 3240 3143 5420 151 22 19 chr3 187076773 187077989 -40446589 + L1PA15 LINE L1 4944 6156 -9 24 0 0 0 chr3 187078004 187078028 -40446550 + AT_rich Low_complexity Low_complexity 1 24 0 1360 207 111 49 chr3 187078847 187079253 -40445325 - MLT1C LTR MaLR 0 467 37 256 178 0 96 chr3 187079291 187079364 -40445214 + MER46C DNA MER2_type 76 141 -197 24 0 0 0 chr3 187079487 187079511 -40445067 + AT_rich Low_complexity Low_complexity 1 24 0 713 163 0 0 chr3 187079511 187079634 -40444944 - L1PB1 LINE L1 -8 6143 6021 3014 142 62 17 chr3 187079634 187080298 -40444280 + L1PB1 LINE L1 4916 5624 -527 2004 113 14 7 chr3 187080298 187080590 -40443988 + AluSc SINE Alu 1 294 -15 3014 142 62 17 chr3 187080590 187080767 -40443811 + L1PB1 LINE L1 5624 5792 -359 497 203 0 8 chr3 187080767 187080895 -40443683 + (CA)n Simple_repeat Simple_repeat 2 128 0 1324 156 0 9 chr3 187080898 187081129 -40443449 + L1PB1 LINE L1 5795 6023 -128 1128 265 115 9 chr3 187081225 187081799 -40442779 + MER114 LTR ERV 1 635 -13 22 0 0 0 chr3 187082646 187082668 -40441910 + AT_rich Low_complexity Low_complexity 1 22 0 22 56 0 0 chr3 187083256 187083292 -40441286 + AT_rich Low_complexity Low_complexity 1 36 0 302 347 111 11 chr3 187084720 187084910 -40439668 + L1MEc LINE L1 1601 1809 -4587 22 0 0 0 chr3 187085458 187085480 -40439098 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr3 187085719 187085750 -40438828 + AT_rich Low_complexity Low_complexity 1 31 0 7676 21 2 0 chr3 187085800 187087171 -40437407 + L1PA3 LINE L1 4780 6152 -3 264 149 0 0 chr3 187087191 187087238 -40437340 + (A)n Simple_repeat Simple_repeat 1 47 0 2768 195 41 30 chr3 187087240 187087846 -40436732 - HERVL74 LTR ERVL -3995 1690 1078 185 83 28 0 chr3 187087885 187087921 -40436657 + (TTCC)n Simple_repeat Simple_repeat 4 40 0 291 28 0 0 chr3 187087939 187087975 -40436603 + (TG)n Simple_repeat Simple_repeat 1 36 0 8154 114 56 7 chr3 187088006 187089247 -40435331 + THE1C-int LTR MaLR 279 1580 0 1717 170 19 22 chr3 187089247 187089571 -40435007 + THE1C LTR MaLR 1 323 -52 237 261 48 21 chr3 187089733 187089878 -40434700 + HAL1b LINE L1 681 766 -818 23 33 0 0 chr3 187090041 187090071 -40434507 + AT_rich Low_complexity Low_complexity 1 30 0 1631 186 26 0 chr3 187090085 187090391 -40434187 + MER2 DNA MER2_type 32 345 0 879 78 86 0 chr3 187090663 187090791 -40433787 - MER85 DNA T2_type 0 139 1 441 227 10 10 chr3 187090988 187091085 -40433493 + Tigger3b DNA MER2_type 2 98 -1133 4786 150 39 40 chr3 187091086 187092045 -40432533 + Tigger3b DNA MER2_type 274 1231 0 5851 146 6 41 chr3 187092235 187093314 -40431264 + Tigger1 DNA MER2_type 805 1845 -573 5109 164 35 8 chr3 187093429 187094358 -40430220 + Tigger1 DNA MER2_type 1463 2417 -1 1405 216 117 35 chr3 187094953 187095388 -40429190 + LTR1B LTR ERV1 1 471 -355 694 198 35 23 chr3 187095387 187095559 -40429019 + LTR1B LTR ERV1 653 826 0 * 25 31 0 0 chr3 187096354 187096386 -40428192 + AT_rich Low_complexity Low_complexity 1 32 0 270 140 60 0 chr3 187097433 187097483 -40427095 - MER90 LTR ERV1 -559 55 3 771 304 65 20 chr3 187097552 187097954 -40426624 - L1ME3A LINE L1 -176 5994 5575 319 181 28 0 chr3 187099855 187099927 -40424651 + MER53 DNA DNA 105 178 -11 192 250 147 15 chr3 187100954 187101022 -40423556 - L2 LINE L2 -2 3311 3235 366 360 44 5 chr3 187101053 187101256 -40423322 + L2 LINE L2 3103 3313 0 29 47 0 0 chr3 187101635 187101678 -40422900 + AT_rich Low_complexity Low_complexity 1 43 0 356 329 22 40 chr3 187102223 187102445 -40422133 + L1ME1 LINE L1 5153 5370 -776 486 321 86 59 chr3 187103057 187103512 -40421066 - LTR33 LTR ERVL -52 469 3 189 320 80 0 chr3 187104223 187104298 -40420280 + MIR3 SINE MIR 87 167 -41 23 33 0 0 chr3 187104638 187104668 -40419910 + AT_rich Low_complexity Low_complexity 1 30 0 1606 279 85 5 chr3 187104726 187104919 -40419659 + L1ME1 LINE L1 5480 5656 -510 2830 63 47 0 chr3 187104919 187105302 -40419276 + L1PA8 LINE L1 5769 6169 -3 1606 279 85 5 chr3 187105302 187105659 -40418919 + L1ME1 LINE L1 5656 6074 -92 4728 95 16 0 chr3 187105714 187106358 -40418220 + THE1B-int LTR MaLR 927 1580 0 1929 152 48 22 chr3 187106358 187106713 -40417865 + THE1B LTR MaLR 1 364 0 21 57 0 0 chr3 187106720 187106755 -40417823 + AT_rich Low_complexity Low_complexity 1 35 0 394 186 39 10 chr3 187106993 187107095 -40417483 - L1MA8 LINE L1 0 6291 6187 45 96 0 0 chr3 187107174 187107310 -40417268 + AT_rich Low_complexity Low_complexity 1 136 0 298 161 0 0 chr3 187108317 187108373 -40416205 - Alu SINE Alu 0 301 246 189 171 0 0 chr3 187108448 187108483 -40416095 + CT-rich Low_complexity Low_complexity 3 37 0 332 197 107 57 chr3 187108789 187108911 -40415667 - MER51D LTR ERV1 -28 629 502 5346 162 22 29 chr3 187109092 187110168 -40414410 - MER11C LTR ERVK -2 1069 1 289 374 24 8 chr3 187110574 187110697 -40413881 + MIR SINE MIR 64 188 -74 24 77 0 0 chr3 187110957 187111009 -40413569 + AT_rich Low_complexity Low_complexity 1 52 0 23 0 0 0 chr3 187111920 187111943 -40412635 + AT_rich Low_complexity Low_complexity 1 23 0 1030 235 81 20 chr3 187113350 187113695 -40410883 + MER47A DNA MER2_type 1 366 0 1911 137 3 0 chr3 187114188 187114473 -40410105 + AluSx SINE Alu 24 309 -3 218 345 12 89 chr3 187114522 187114690 -40409888 + MIR SINE MIR 51 205 -57 348 303 130 38 chr3 187115427 187115612 -40408966 + MIR SINE MIR 48 249 -13 200 238 0 0 chr3 187115918 187115960 -40408618 + (TA)n Simple_repeat Simple_repeat 1 42 0 500 110 0 0 chr3 187116138 187116211 -40408367 + MER41B LTR ERV1 1 73 -562 1939 237 123 55 chr3 187116327 187117244 -40407334 - L1MC4 LINE L1 -39 8003 7024 233 224 10 133 chr3 187117251 187117349 -40407229 - L1MC4 LINE L1 -1143 6899 6814 326 264 136 36 chr3 187117499 187117639 -40406939 - MLT1H LTR MaLR -373 176 23 22 0 0 0 chr3 187117852 187117874 -40406704 + AT_rich Low_complexity Low_complexity 1 22 0 2118 121 0 7 chr3 187118580 187118886 -40405692 - AluSc SINE Alu -5 304 1 397 308 91 58 chr3 187119139 187119591 -40404987 - HAL1b LINE L1 -600 748 282 433 208 50 10 chr3 187119948 187120049 -40404529 + L1MC4a LINE L1 6736 6840 -968 21 0 0 0 chr3 187121280 187121301 -40403277 + AT_rich Low_complexity Low_complexity 1 21 0 1932 218 88 67 chr3 187122639 187123175 -40401403 + MLT1E3 LTR MaLR 6 558 -66 2340 99 0 0 chr3 187123175 187123487 -40401091 - AluSx SINE Alu 0 312 1 1932 218 88 67 chr3 187123487 187123550 -40401028 + MLT1E3 LTR MaLR 558 618 -6 189 0 0 0 chr3 187123552 187123573 -40401005 + (A)n Simple_repeat Simple_repeat 1 21 0 25 0 0 0 chr3 187123608 187123633 -40400945 + AT_rich Low_complexity Low_complexity 1 25 0 200 170 38 19 chr3 187123917 187123970 -40400608 + (CATA)n Simple_repeat Simple_repeat 3 56 0 747 216 66 19 chr3 187124014 187124227 -40400351 - MER58 DNA MER1_type -57 284 62 3703 205 80 40 chr3 187124443 187125482 -40399096 + Tigger6a DNA MER2_type 2 1082 -1 222 259 17 0 chr3 187125487 187125545 -40399033 + (TATATG)n Simple_repeat Simple_repeat 6 64 0 758 241 18 64 chr3 187126418 187126465 -40398113 - MIR SINE MIR -21 241 193 1953 137 10 0 chr3 187126465 187126764 -40397814 + AluSc SINE Alu 1 302 -7 758 241 18 64 chr3 187126764 187126936 -40397642 - MIR SINE MIR -69 193 32 22 0 0 0 chr3 187127981 187128003 -40396575 + AT_rich Low_complexity Low_complexity 1 22 0 13273 188 34 9 chr3 187128311 187130961 -40393617 + Tigger2 DNA MER2_type 2 2718 0 21 0 0 0 chr3 187131238 187131259 -40393319 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 187131422 187131444 -40393134 + AT_rich Low_complexity Low_complexity 1 22 0 221 0 0 33 chr3 187132055 187132085 -40392493 + (GAGTG)n Simple_repeat Simple_repeat 3 31 0 21 57 0 0 chr3 187132845 187132880 -40391698 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 187133074 187133097 -40391481 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 187133487 187133510 -40391068 + AT_rich Low_complexity Low_complexity 1 23 0 487 101 69 0 chr3 187133510 187133669 -40390909 + (TA)n Simple_repeat Simple_repeat 1 170 0 770 176 74 0 chr3 187133750 187133898 -40390680 - AluJo SINE Alu -20 292 134 1525 216 0 13 chr3 187133898 187134203 -40390375 - AluJo SINE Alu -11 301 1 353 314 87 37 chr3 187134203 187134445 -40390133 - L1MC/D LINE L1 -2260 5548 5295 22 0 0 0 chr3 187134522 187134544 -40390034 + AT_rich Low_complexity Low_complexity 1 22 0 254 211 93 100 chr3 187135187 187135308 -40389270 + MIR SINE MIR 64 182 -63 34 0 0 0 chr3 187135994 187136028 -40388550 + AT_rich Low_complexity Low_complexity 1 34 0 788 156 15 7 chr3 187136061 187136196 -40388382 - AluJo SINE Alu -176 136 1 219 36 0 0 chr3 187136580 187136608 -40387970 + (TTTA)n Simple_repeat Simple_repeat 1 28 0 3504 127 60 2 chr3 187137195 187137795 -40386783 + LTR24C LTR ERV1 1 635 0 2658 10 0 0 chr3 187137881 187138185 -40386393 + L1PA2 LINE L1 5852 6155 0 180 0 0 0 chr3 187138216 187138236 -40386342 + (A)n Simple_repeat Simple_repeat 1 20 0 23 0 0 0 chr3 187138236 187138259 -40386319 + AT_rich Low_complexity Low_complexity 1 23 0 2548 86 108 5 chr3 187138487 187138893 -40385685 + LTR7 LTR ERV1 1 448 -2 18593 108 6 20 chr3 187138895 187141779 -40382799 + HERVH LTR ERV1 1 2842 -4871 732 210 167 0 chr3 187141909 187142161 -40382417 - L1M4 LINE L1 -3127 3019 2726 1337 167 4 4 chr3 187142180 187142408 -40382170 - MER50 LTR ERV1 -29 705 478 2801 192 26 21 chr3 187142414 187143654 -40380924 - MER50-int LTR ERV1 -804 4076 1003 * 10110 149 53 31 chr3 187143650 187145460 -40379118 - MER50-int LTR ERV1 -5355 1850 1 1956 176 39 5 chr3 187145462 187146127 -40378451 - MER50 LTR ERV1 -24 710 1 579 346 20 8 chr3 187146549 187146803 -40377775 - L1MEc LINE L1 -6104 292 36 2042 132 14 0 chr3 187146810 187147106 -40377472 + AluSx SINE Alu 1 300 -12 197 0 71 0 chr3 187148584 187148612 -40375966 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 1028 272 50 6 chr3 187148755 187149093 -40375485 + MER113 DNA MER1_type? 160 512 -9 221 226 0 0 chr3 187149594 187149647 -40374931 + (CA)n Simple_repeat Simple_repeat 2 54 0 42 71 0 0 chr3 187150310 187150394 -40374184 + AT_rich Low_complexity Low_complexity 1 84 0 42 71 0 0 chr3 187150620 187150704 -40373874 + AT_rich Low_complexity Low_complexity 1 84 0 227 103 26 0 chr3 187150732 187150771 -40373807 + (TA)n Simple_repeat Simple_repeat 1 40 0 827 263 0 0 chr3 187150953 187151139 -40373439 + MLT1A1 LTR MaLR 1 186 -179 362 326 133 6 chr3 187151974 187152155 -40372423 - MIR SINE MIR -6 256 53 21 36 0 0 chr3 187152642 187152670 -40371908 + AT_rich Low_complexity Low_complexity 1 28 0 231 378 49 0 chr3 187153196 187153278 -40371300 + L2 LINE L2 3155 3240 -32 867 208 11 0 chr3 187153930 187154108 -40370470 - FRAM SINE Alu -4 172 1 2007 132 0 3 chr3 187154139 187154434 -40370144 - AluSx SINE Alu -18 294 1 337 342 99 15 chr3 187155291 187155493 -40369085 - LTR33 LTR ERVL -299 222 4 1605 252 72 66 chr3 187155850 187156500 -40368078 + MLT1E1 LTR MaLR 1 654 0 24 0 0 0 chr3 187156851 187156875 -40367703 + AT_rich Low_complexity Low_complexity 1 24 0 2574 98 8 16 chr3 187157946 187158322 -40366256 - THE1C LTR MaLR -2 373 1 34 32 0 32 chr3 187158425 187158456 -40366122 + AT_rich Low_complexity Low_complexity 1 31 -30 763 178 0 0 chr3 187158456 187158574 -40366004 - FLAM_C SINE Alu -15 118 1 34 32 0 32 chr3 187158574 187158605 -40365973 + AT_rich Low_complexity Low_complexity 31 61 0 2116 131 0 0 chr3 187158647 187158953 -40365625 + AluSg SINE Alu 1 306 -4 318 157 59 10 chr3 187159499 187159601 -40364977 + (TA)n Simple_repeat Simple_repeat 1 107 0 1267 215 64 17 chr3 187160402 187160700 -40363878 - AluJb SINE Alu 0 312 1 552 100 10 20 chr3 187161322 187161422 -40363156 + (GAAAA)n Simple_repeat Simple_repeat 1 99 0 7206 51 0 0 chr3 187161556 187162787 -40361791 - L1PA5 LINE L1 -1 6153 4924 8353 52 0 0 chr3 187162788 187163848 -40360730 + L1PA5 LINE L1 3845 4904 -1242 404 277 64 105 chr3 187164477 187164791 -40359787 + L1MC3 LINE L1 254 554 -5491 2129 292 85 23 chr3 187164895 187166880 -40357698 + L1MC3 LINE L1 546 2847 -3898 8456 222 80 20 chr3 187167014 187167181 -40357397 + L1MC3 LINE L1 5673 5828 -2375 1499 143 100 8 chr3 187167181 187167440 -40357138 + AluSx SINE Alu 1 337 0 383 0 37 19 chr3 187167440 187167494 -40357084 + (TAAA)n Simple_repeat Simple_repeat 2 180 0 8456 222 80 20 chr3 187167494 187169708 -40354870 + L1MC3 LINE L1 5828 8202 -1 24 0 0 0 chr3 187170345 187170369 -40354209 + AT_rich Low_complexity Low_complexity 1 24 0 5726 204 143 23 chr3 187173020 187174510 -40350068 - MER52A LTR ERV1 0 1755 1 2951 104 22 4 chr3 187174523 187174973 -40349605 + L1PA13 LINE L1 5705 6162 -1 243 326 70 43 chr3 187175654 187175884 -40348694 + MIR SINE MIR 13 248 -14 1206 321 98 25 chr3 187175893 187176638 -40347940 - L1MEc LINE L1 -5556 840 42 22 0 0 0 chr3 187176836 187176858 -40347720 + AT_rich Low_complexity Low_complexity 1 22 0 816 288 106 27 chr3 187177731 187178137 -40346441 + LTR16A LTR ERVL 13 450 0 239 355 145 34 chr3 187178970 187179613 -40344965 + L2 LINE L2 1982 2695 -619 240 35 0 0 chr3 187179693 187179722 -40344856 + (TTTTG)n Simple_repeat Simple_repeat 2 30 0 6394 251 60 20 chr3 187179833 187181458 -40343120 + L1M2 LINE L1 1 1690 -5159 4166 219 44 40 chr3 187181478 187181595 -40342983 + L1M2 LINE L1 1783 1898 -4950 1542 183 37 0 chr3 187181595 187181868 -40342710 + AluSx SINE Alu 25 307 -5 4166 219 44 40 chr3 187181868 187183584 -40340994 + L1M2 LINE L1 1898 3607 -3241 2252 162 67 0 chr3 187183584 187183778 -40340800 + MSTA LTR MaLR 1 181 -247 186 43 0 0 chr3 187183778 187183801 -40340777 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 2252 162 67 0 chr3 187183801 187184007 -40340571 + MSTA LTR MaLR 181 428 0 7551 202 47 9 chr3 187184008 187185599 -40338979 + MSTA-int LTR MaLR 2 1651 0 2530 154 21 5 chr3 187185599 187186020 -40338558 + MSTA LTR MaLR 1 428 0 4166 219 44 40 chr3 187186020 187186417 -40338161 + L1M2 LINE L1 3606 4028 -2820 1771 114 14 102 chr3 187186396 187186533 -40338045 + L1P4 LINE L1 6178 6325 -543 * 243 0 0 0 chr3 187186533 187186560 -40338018 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 1771 114 14 102 chr3 187186560 187186580 -40337998 + L1P4 LINE L1 6325 6345 -523 1895 109 41 0 chr3 187186580 187186847 -40337731 - AluSp SINE Alu -25 288 11 1771 114 14 102 chr3 187186847 187187040 -40337538 + L1P4 LINE L1 6345 6498 -370 248 230 0 14 chr3 187187170 187187244 -40337334 + (TA)n Simple_repeat Simple_repeat 2 74 0 1005 120 31 5 chr3 187187347 187187539 -40337039 - L1P LINE L1 -1194 4952 4756 * 8185 51 3 0 chr3 187187537 187188574 -40336004 + L1P LINE L1 3412 4451 -1695 2052 103 3 24 chr3 187188859 187189196 -40335382 - AluSx SINE Alu 0 331 1 1457 152 47 29 chr3 187191042 187191318 -40333260 - MER1B DNA MER1_type -2 337 57 321 188 24 24 chr3 187191528 187191613 -40332965 - THE1C-int LTR MaLR -1495 85 1 1998 138 55 17 chr3 187191613 187191974 -40332604 - THE1C LTR MaLR 0 375 1 264 201 171 36 chr3 187192021 187192142 -40332436 + L1ME LINE L1 5336 5472 -698 9553 38 9 2 chr3 187242587 187244158 -40280420 - L1P1 LINE L1 -386 5769 4191 190 298 154 10 chr3 187244158 187244262 -40280316 + L2 LINE L2 3193 3311 -2 375 239 68 0 chr3 187244762 187244879 -40279699 + L1MCb LINE L1 40 164 -5881 21 0 0 0 chr3 187247267 187247288 -40277290 + AT_rich Low_complexity Low_complexity 1 21 0 28 0 0 0 chr3 187248056 187248084 -40276494 + AT_rich Low_complexity Low_complexity 1 28 0 321 313 100 39 chr3 187248173 187248454 -40276124 - L1ME4a LINE L1 -240 5881 5584 1168 225 52 69 chr3 187248470 187248919 -40275659 - MER39 LTR ERV1 0 653 264 274 156 0 22 chr3 187248961 187249006 -40275572 + MER39 LTR ERV1 21 64 -643 247 241 0 0 chr3 187249009 187249063 -40275515 - MER39 LTR ERV1 -653 54 1 3579 122 51 14 chr3 187249790 187250378 -40274200 + MER4B LTR ERV1 1 610 0 2077 44 0 0 chr3 187250670 187250922 -40273656 + L1PA4 LINE L1 5903 6154 -1 264 355 41 0 chr3 187250997 187251118 -40273460 + MIR SINE MIR 120 245 -17 2512 64 6 0 chr3 187251147 187251476 -40273102 + L1PA7 LINE L1 5824 6154 0 1076 229 62 81 chr3 187252977 187253474 -40271104 - L1ME1 LINE L1 -5 6230 5743 1163 260 22 22 chr3 187253480 187253842 -40270736 - L1ME1 LINE L1 -1302 4913 4552 * 1641 257 106 50 chr3 187253835 187255265 -40269313 - L1ME1 LINE L1 -3148 3067 1518 2215 116 6 0 chr3 187255265 187255576 -40269002 - AluSp SINE Alu 0 313 1 1641 257 106 50 chr3 187255576 187255895 -40268683 - L1ME1 LINE L1 -4697 1518 1219 195 42 0 0 chr3 187256032 187256056 -40268522 + (CAA)n Simple_repeat Simple_repeat 2 25 0 27 49 0 0 chr3 187256057 187256098 -40268480 + AT_rich Low_complexity Low_complexity 1 41 0 32 57 0 0 chr3 187256266 187256319 -40268259 + AT_rich Low_complexity Low_complexity 1 53 0 1280 135 26 18 chr3 187256336 187256565 -40268013 - Tigger5 DNA MER2_type 0 2323 2093 28490 127 18 59 chr3 187256630 187263034 -40261544 + L1PA7 LINE L1 12 6143 -11 245 240 0 0 chr3 187263052 187263102 -40261476 - Tigger5 DNA MER2_type -2273 50 1 181 348 87 0 chr3 187264197 187264289 -40260289 - L2 LINE L2 0 3313 3214 2104 176 46 2 chr3 187264694 187265048 -40259530 + MSTA LTR MaLR 1 338 -90 234 105 0 0 chr3 187265048 187265086 -40259492 + (TA)n Simple_repeat Simple_repeat 2 39 0 243 0 0 0 chr3 187265091 187265118 -40259460 + (TG)n Simple_repeat Simple_repeat 2 28 0 2104 176 46 2 chr3 187265118 187265167 -40259411 + MSTA LTR MaLR 341 428 0 36 0 0 0 chr3 187265277 187265313 -40259265 + AT_rich Low_complexity Low_complexity 1 36 0 197 33 33 0 chr3 187266855 187266885 -40257693 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2142 84 7 3 chr3 187266897 187267184 -40257394 - AluY SINE Alu -23 288 1 22 0 0 0 chr3 187267873 187267895 -40256683 + AT_rich Low_complexity Low_complexity 1 22 0 1451 238 33 14 chr3 187268714 187269079 -40255499 - MLT1A2 LTR MaLR -2 372 1 2305 186 13 32 chr3 187269111 187269573 -40255005 - MER50 LTR ERV1 -33 701 249 1636 184 165 8 chr3 187269573 187269943 -40254635 + MSTA LTR MaLR 1 428 0 7182 210 23 32 chr3 187269963 187271536 -40253042 + MSTA-int LTR MaLR 93 1651 0 1649 155 188 8 chr3 187271538 187271899 -40252679 + MSTA LTR MaLR 3 428 0 1161 193 42 0 chr3 187271899 187272138 -40252440 - MER50 LTR ERV1 -485 249 1 1356 182 0 4 chr3 187272138 187272385 -40252193 - MER50-int LTR ERV1 -8 7197 6952 4218 85 28 25 chr3 187272385 187273412 -40251166 - MER11A LTR ERVK 0 1266 1 516 171 0 0 chr3 187273412 187273488 -40251090 - MER50-int LTR ERV1 -248 6957 6882 15759 189 42 16 chr3 187273499 187276638 -40247940 - MER50-int LTR ERV1 -1197 6008 2788 5562 178 22 19 chr3 187276634 187278244 -40246334 - MER50-int LTR ERV1 -5355 1850 38 * 4009 161 14 31 chr3 187278244 187278987 -40245591 - MER50 LTR ERV1 -4 730 1 21 71 0 0 chr3 187279420 187279462 -40245116 + AT_rich Low_complexity Low_complexity 1 42 0 1287 346 85 15 chr3 187279490 187280172 -40244406 + L2 LINE L2 576 1305 -2009 720 272 65 16 chr3 187280278 187280524 -40244054 + MER46C DNA MER2_type 80 337 -1 2668 166 51 4 chr3 187280606 187281236 -40243342 + MER67C LTR ERV1 4 710 0 827 317 114 76 chr3 187281241 187282238 -40242340 + L2 LINE L2 1566 2600 -714 210 377 109 29 chr3 187282387 187282562 -40242016 + L2 LINE L2 2866 3054 -259 461 221 149 64 chr3 187282586 187282835 -40241743 - L1MC4 LINE L1 -1286 6756 6487 1197 255 88 30 chr3 187282961 187283459 -40241119 - L1ME2 LINE L1 -8 6156 5630 15738 43 2 1 chr3 187283459 187286170 -40238408 - L1PA4 LINE L1 -4 6151 3438 2224 55 3 0 chr3 187286170 187286463 -40238115 + L1PA4 LINE L1 3169 3462 -2684 472 309 20 31 chr3 187286464 187286758 -40237820 - L1ME2 LINE L1 -523 5641 5351 309 254 16 74 chr3 187286776 187286898 -40237680 - L1ME2 LINE L1 -837 5309 5195 751 238 19 31 chr3 187286900 187287161 -40237417 - L1ME2 LINE L1 -1481 4665 4408 21 0 0 0 chr3 187287182 187287203 -40237375 + AT_rich Low_complexity Low_complexity 1 21 0 550 267 93 28 chr3 187287250 187287571 -40237007 - L1MD2 LINE L1 -89 6077 5901 372 231 38 65 chr3 187287542 187287728 -40236850 + L1MC5 LINE L1 7730 7910 -51 * 25 75 0 0 chr3 187287940 187287993 -40236585 + AT_rich Low_complexity Low_complexity 1 53 0 30 0 0 0 chr3 187288166 187288196 -40236382 + AT_rich Low_complexity Low_complexity 1 30 0 942 188 30 10 chr3 187288429 187288626 -40235952 + MER3 DNA MER1_type 9 209 0 21 0 0 0 chr3 187289900 187289921 -40234657 + AT_rich Low_complexity Low_complexity 1 21 0 267 103 0 0 chr3 187290045 187290084 -40234494 + (CATA)n Simple_repeat Simple_repeat 2 40 0 246 257 14 0 chr3 187290189 187290263 -40234315 + (TTTA)n Simple_repeat Simple_repeat 1 75 0 1648 165 6 41 chr3 187291474 187291789 -40232789 + AluSx SINE Alu 1 304 -8 285 242 0 0 chr3 187292808 187292899 -40231679 + (TA)n Simple_repeat Simple_repeat 2 92 0 1805 171 26 17 chr3 187293379 187293723 -40230855 - MER7A DNA MER2_type 0 346 2 1715 56 0 0 chr3 187294336 187294549 -40230029 - L1PA5 LINE L1 -221 5933 5721 1963 49 0 0 chr3 187294549 187294781 -40229797 + L1PA5 LINE L1 5910 6153 -1 248 286 88 22 chr3 187294827 187294918 -40229660 + LTR50 LTR ERVL 15 111 -684 877 229 8 34 chr3 187294934 187295170 -40229408 - MER58B DNA MER1_type 0 341 112 592 211 0 45 chr3 187295175 187295308 -40229270 - FLAM_A SINE Alu -4 138 12 296 329 0 0 chr3 187295308 187295384 -40229194 - MER58B DNA MER1_type -265 76 1 826 273 122 26 chr3 187295603 187295804 -40228774 + LTR50 LTR ERVL 379 559 -236 4620 105 23 15 chr3 187295804 187296489 -40228089 + LTR8 LTR ERV1 1 691 0 826 273 122 26 chr3 187296489 187296665 -40227913 + LTR50 LTR ERVL 559 792 -3 34 24 0 0 chr3 187297118 187297159 -40227419 + AT_rich Low_complexity Low_complexity 1 41 0 201 94 0 0 chr3 187297165 187297197 -40227381 + (TA)n Simple_repeat Simple_repeat 1 32 0 5416 170 85 20 chr3 187297315 187297989 -40226589 - L1PA15 LINE L1 -7 6158 5529 197 0 0 67 chr3 187297989 187298019 -40226559 + (TTTA)n Simple_repeat Simple_repeat 2 29 0 1820 132 8 4 chr3 187298019 187298285 -40226293 - AluSc SINE Alu -42 267 1 5416 170 85 20 chr3 187298285 187299444 -40225134 - L1PA15 LINE L1 -635 5530 4194 827 313 163 11 chr3 187299484 187299858 -40224720 + LTR16A LTR ERVL 18 448 -2 1333 57 6 6 chr3 187299971 187300170 -40224408 - AluY SINE Alu 0 304 106 261 251 69 28 chr3 187300267 187300349 -40224229 - MIR SINE MIR -97 111 26 182 314 70 35 chr3 187301837 187301923 -40222655 - MIR3 SINE MIR -44 164 76 2201 106 3 19 chr3 187302128 187302440 -40222138 - AluSp SINE Alu -6 307 1 591 302 84 22 chr3 187302880 187303155 -40221423 - MLT1J1 LTR MaLR -126 320 29 701 175 44 19 chr3 187303452 187303612 -40220966 - L1MA4 LINE L1 -9 6291 6128 849 236 16 26 chr3 187304023 187304170 -40220408 - MER5A DNA MER1_type 0 189 43 2302 209 14 72 chr3 187304170 187304820 -40219758 - LTR9 LTR ERV1 0 612 1 849 236 16 26 chr3 187304820 187304863 -40219715 - MER5A DNA MER1_type -146 43 1 513 267 110 28 chr3 187304872 187305127 -40219451 - HsTC2 DNA Tc2 -188 1710 1435 1333 236 64 6 chr3 187305344 187305687 -40218891 + MLT1A1 LTR MaLR 1 363 -2 2082 223 140 18 chr3 187306261 187307015 -40217563 - MER52C LTR ERV1 -303 975 1 2685 85 3 0 chr3 187307445 187307799 -40216779 + THE1A LTR MaLR 1 355 0 10892 116 5 2 chr3 187307799 187309375 -40215203 + THE1A-int LTR MaLR 1 1580 0 2388 104 26 0 chr3 187309375 187309721 -40214857 + THE1A LTR MaLR 1 355 0 990 211 0 25 chr3 187310747 187310951 -40213627 + L1PB4 LINE L1 5954 6152 -4 24 77 0 0 chr3 187311668 187311720 -40212858 + AT_rich Low_complexity Low_complexity 1 52 0 200 310 118 39 chr3 187311881 187312084 -40212494 + MIR SINE MIR 34 252 -10 753 334 128 61 chr3 187312286 187313239 -40211339 - L2 LINE L2 0 3313 2283 610 113 0 0 chr3 187313271 187313368 -40211210 + L1MA9 LINE L1 6216 6312 0 186 314 0 0 chr3 187314259 187314310 -40210268 - MIR SINE MIR -8 254 204 531 322 75 31 chr3 187315007 187315391 -40209187 + L1MA6 LINE L1 464 1986 -5500 1579 284 99 11 chr3 187315873 187316808 -40207770 + L1MA6 LINE L1 2176 2909 -4658 2057 164 83 2 chr3 187316808 187317204 -40207374 - MSTA LTR MaLR 0 428 1 1579 284 99 11 chr3 187317204 187317322 -40207256 + L1MA6 LINE L1 2909 3015 -4552 22 35 0 0 chr3 187317323 187317352 -40207226 + AT_rich Low_complexity Low_complexity 1 29 0 4896 209 31 3 chr3 187317477 187318594 -40205984 + L1MA6 LINE L1 4947 6095 -1470 1588 187 21 53 chr3 187318577 187318995 -40205583 + L1MA6 LINE L1 7310 7714 -5 * 1004 264 73 9 chr3 187318985 187319507 -40205071 + L1M3d LINE L1 3518 4075 -3490 * 2662 163 2 57 chr3 187319612 187320152 -40204426 - HERVL-B3 LTR ERVL -5144 510 1 1937 208 31 85 chr3 187320152 187320738 -40203840 - MLT2B3 LTR ERVL 0 554 1 583 193 21 52 chr3 187320743 187320859 -40203719 - L1 LINE L1 -1703 4443 4334 4680 44 7 29 chr3 187320859 187321136 -40203442 + L1PA7 LINE L1 5550 5832 -322 1894 138 11 0 chr3 187321136 187321475 -40203103 + AluSg SINE Alu 3 344 0 4680 44 7 29 chr3 187321475 187321815 -40202763 + L1PA7 LINE L1 5832 6154 0 583 193 21 52 chr3 187321815 187321890 -40202688 - L1 LINE L1 -1812 4334 4258 2231 198 110 4 chr3 187321890 187322400 -40202178 + L1M3d LINE L1 5105 5668 -1897 1030 255 28 8 chr3 187322400 187322753 -40201825 - L1 LINE L1 -3137 3009 2650 21 0 0 0 chr3 187322893 187322914 -40201664 + AT_rich Low_complexity Low_complexity 1 21 0 570 323 65 35 chr3 187323303 187323644 -40200934 + L2 LINE L2 74 424 -2890 264 326 0 11 chr3 187323657 187323746 -40200832 + L2 LINE L2 747 834 -2480 439 319 40 74 chr3 187323811 187324162 -40200416 + L2 LINE L2 830 1168 -2146 204 330 39 29 chr3 187324282 187324385 -40200193 - L2 LINE L2 -435 2879 2776 283 352 75 49 chr3 187324387 187324654 -40199924 + L2 LINE L2 2876 3149 -164 1393 259 49 101 chr3 187324656 187325228 -40199350 + MLT1F1 LTR MaLR 1 567 0 26 30 0 0 chr3 187325228 187325261 -40199317 + AT_rich Low_complexity Low_complexity 1 33 0 242 180 0 115 chr3 187325336 187325397 -40199181 + L2 LINE L2 3257 3310 -3 38 68 0 0 chr3 187325553 187325626 -40198952 + AT_rich Low_complexity Low_complexity 1 73 0 352 214 93 71 chr3 187325676 187325816 -40198762 + MIR3 SINE MIR 45 187 -21 28 61 0 0 chr3 187326270 187326319 -40198259 + AT_rich Low_complexity Low_complexity 1 49 0 49 52 0 0 chr3 187328120 187328197 -40196381 + AT_rich Low_complexity Low_complexity 1 77 0 1317 196 89 15 chr3 187328362 187328633 -40195945 + AluJb SINE Alu 1 291 -11 21 57 0 0 chr3 187328690 187328725 -40195853 + AT_rich Low_complexity Low_complexity 1 35 0 686 12 0 0 chr3 187329637 187329721 -40194857 - L1PA2 LINE L1 -4 6151 6068 3587 5 10 0 chr3 187329721 187330124 -40194454 + L1PA2 LINE L1 5460 5866 -289 2071 130 0 16 chr3 187330449 187330764 -40193814 + AluSx SINE Alu 3 312 0 1439 200 70 36 chr3 187331361 187331746 -40192832 - LTR1B LTR ERV1 0 826 401 1089 201 74 32 chr3 187332393 187332677 -40191901 - THE1C LTR MaLR 0 375 80 4549 123 59 48 chr3 187332677 187334104 -40190474 + pTR5 LTR ERV1 747 2606 0 398 213 0 12 chr3 187334104 187334184 -40190394 - THE1C LTR MaLR -349 79 1 8761 161 12 42 chr3 187334184 187334247 -40190331 - THE1C-int LTR MaLR 0 1580 1517 1892 170 24 29 chr3 187334247 187334624 -40189954 - THE1C LTR MaLR 0 375 1 8736 138 29 62 chr3 187334624 187336258 -40188320 - THE1C-int LTR MaLR 0 1580 1 2236 139 21 16 chr3 187336258 187336631 -40187947 - THE1C LTR MaLR 0 375 1 8761 161 12 42 chr3 187336631 187338190 -40186388 - THE1C-int LTR MaLR -60 1520 4 1277 225 60 30 chr3 187338193 187338557 -40186021 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr3 187338729 187338750 -40185828 + AT_rich Low_complexity Low_complexity 1 21 0 1597 195 13 22 chr3 187338961 187339274 -40185304 + AluJo SINE Alu 1 310 -2 228 35 0 0 chr3 187339386 187339415 -40185163 + (CA)n Simple_repeat Simple_repeat 2 30 0 1140 226 52 0 chr3 187340042 187340294 -40184284 - L1PA16 LINE L1 -7 7597 7333 * 10561 265 25 25 chr3 187340293 187345047 -40179531 - L1PA16 LINE L1 -626 6978 2182 673 360 40 11 chr3 187345830 187346202 -40178376 - L1PA16 LINE L1 -7187 394 12 243 167 0 37 chr3 187346221 187346275 -40178303 + T-rich Low_complexity Low_complexity 4 55 0 745 187 7 0 chr3 187346301 187346440 -40178138 - L1P5 LINE L1 -361 5790 5651 1284 360 43 9 chr3 187346447 187347091 -40177487 - HERV16 LTR ERVL -2671 2325 1660 28 29 0 0 chr3 187347747 187347782 -40176796 + AT_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 187348134 187348157 -40176421 + AT_rich Low_complexity Low_complexity 1 23 0 27 49 0 0 chr3 187348311 187348352 -40176226 + AT_rich Low_complexity Low_complexity 1 41 0 29 0 0 0 chr3 187349265 187349294 -40175284 + AT_rich Low_complexity Low_complexity 1 29 0 225 237 0 0 chr3 187349807 187349866 -40174712 + (TATG)n Simple_repeat Simple_repeat 3 61 0 1863 161 13 0 chr3 187350760 187351059 -40173519 + AluSx SINE Alu 1 303 -9 211 313 15 0 chr3 187351092 187351159 -40173419 + GA-rich Low_complexity Low_complexity 2 69 0 77 97 0 0 chr3 187351504 187351742 -40172836 + AT_rich Low_complexity Low_complexity 1 238 0 23 68 0 0 chr3 187351962 187352006 -40172572 + AT_rich Low_complexity Low_complexity 1 44 0 189 359 13 13 chr3 187352095 187352173 -40172405 - MIR SINE MIR -183 79 2 237 174 0 0 chr3 187352316 187352385 -40172193 + (TA)n Simple_repeat Simple_repeat 2 70 0 1070 233 53 34 chr3 187352410 187352767 -40171811 - MLT1A1 LTR MaLR -1 364 1 285 360 112 0 chr3 187352849 187353099 -40171479 + L2 LINE L2 1932 2209 -1105 1323 126 196 49 chr3 187353172 187353498 -40171080 - THE1C LTR MaLR 0 375 2 21 0 0 0 chr3 187353681 187353702 -40170876 + AT_rich Low_complexity Low_complexity 1 21 0 1277 225 60 30 chr3 187353874 187354238 -40170340 + THE1C LTR MaLR 1 375 0 8761 161 12 42 chr3 187354241 187355800 -40168778 + THE1C-int LTR MaLR 4 1607 27 2236 139 21 16 chr3 187355800 187356173 -40168405 + THE1C LTR MaLR 1 375 0 8753 137 29 61 chr3 187356173 187357805 -40166773 + THE1C-int LTR MaLR 1 1580 0 1892 170 24 29 chr3 187357805 187358182 -40166396 + THE1C LTR MaLR 1 375 0 8761 161 12 42 chr3 187358182 187358245 -40166333 + THE1C-int LTR MaLR 1517 1580 0 398 213 0 12 chr3 187358245 187358325 -40166253 + THE1C LTR MaLR 1 79 -349 4549 123 59 48 chr3 187358325 187359752 -40164826 - pTR5 LTR ERV1 0 2606 1524 1089 201 74 32 chr3 187359752 187360036 -40164542 + THE1C LTR MaLR 80 375 0 233 321 114 7 chr3 187360509 187360649 -40163929 - MIR SINE MIR -59 203 49 41 21 0 0 chr3 187360755 187360803 -40163775 + AT_rich Low_complexity Low_complexity 1 48 0 2108 118 0 10 chr3 187361567 187361864 -40162714 + AluSx SINE Alu 1 294 -18 25 0 0 0 chr3 187362188 187362213 -40162365 + AT_rich Low_complexity Low_complexity 1 25 0 21 36 0 0 chr3 187362830 187362858 -40161720 + AT_rich Low_complexity Low_complexity 1 28 0 6554 83 0 0 chr3 187362940 187364038 -40160540 - L1PA7 LINE L1 -7 6147 5047 25 31 0 0 chr3 187364493 187364525 -40160053 + AT_rich Low_complexity Low_complexity 1 32 0 23 0 0 0 chr3 187364699 187364722 -40159856 + AT_rich Low_complexity Low_complexity 1 23 0 1977 45 8 0 chr3 187365348 187365591 -40158987 + L1PA5 LINE L1 5903 6147 -7 333 0 0 0 chr3 187365592 187365629 -40158949 + (TA)n Simple_repeat Simple_repeat 2 38 0 421 350 126 11 chr3 187365637 187365900 -40158678 - L2 LINE L2 -1034 2280 1988 723 303 81 19 chr3 187365900 187366270 -40158308 - L2 LINE L2 -2273 1041 649 363 209 14 0 chr3 187366756 187366841 -40157737 - L1 LINE L1 -2303 3843 3758 1755 154 221 0 chr3 187368150 187368480 -40156098 + MER57A LTR ERV1 1 403 0 4968 168 13 6 chr3 187368480 187369316 -40155262 + MER57A-int LTR ERV1 1 842 -6695 380 250 22 140 chr3 187369762 187369990 -40154588 + MER57A-int LTR ERV1 1198 1398 -3725 5547 116 22 11 chr3 187370057 187371545 -40153033 - L1PA13 LINE L1 -2 6161 4662 528 206 47 140 chr3 187371611 187371825 -40152753 + MER57-int LTR ERV1 3247 3440 -2891 2185 118 13 0 chr3 187371971 187372277 -40152301 + AluSx SINE Alu 3 312 0 14803 153 47 28 chr3 187372277 187373578 -40151000 + MER57-int LTR ERV1 1731 3005 -4532 2239 119 0 0 chr3 187373578 187373880 -40150698 + AluSc SINE Alu 1 302 -7 14803 153 47 28 chr3 187373880 187374331 -40150247 + MER57-int LTR ERV1 3005 3446 -4091 315 0 0 0 chr3 187374331 187374366 -40150212 + (CA)n Simple_repeat Simple_repeat 2 36 0 14803 153 47 28 chr3 187374366 187375743 -40148835 + MER57-int LTR ERV1 3446 6974 -563 329 87 0 0 chr3 187375753 187375799 -40148779 + pTR5 LTR ERV1 349 394 -2044 21 95 0 0 chr3 187376812 187376875 -40147703 + AT_rich Low_complexity Low_complexity 1 63 0 2080 122 3 0 chr3 187377211 187377507 -40147071 + AluSg SINE Alu 1 297 -13 23 33 0 0 chr3 187377564 187377594 -40146984 + AT_rich Low_complexity Low_complexity 1 30 0 1074 259 118 73 chr3 187378026 187378508 -40146070 + LTR40a LTR ERVL 16 519 0 3467 164 19 5 chr3 187378593 187379223 -40145355 - L1PA16 LINE L1 -3 6163 5525 646 193 12 0 chr3 187379679 187379850 -40144728 + CT-rich Low_complexity Low_complexity 2 174 0 31 0 0 0 chr3 187379951 187379982 -40144596 + AT_rich Low_complexity Low_complexity 1 31 0 2020 196 23 18 chr3 187381617 187382014 -40142564 + L1MB3 LINE L1 2 400 -5984 1456 222 36 17 chr3 187382018 187382374 -40142204 + MLT1A1 LTR MaLR 1 363 -2 1991 248 65 75 chr3 187382534 187383148 -40141430 + MLT1A1-int LTR MaLR 1128 1735 0 1239 219 111 13 chr3 187383154 187383469 -40141109 + MLT1A1 LTR MaLR 13 358 -7 2428 123 25 3 chr3 187383469 187383836 -40140742 - THE1C LTR MaLR 0 375 1 8889 143 62 4 chr3 187383836 187385329 -40139249 - THE1C-int LTR MaLR 0 1580 2 2479 115 5 5 chr3 187385330 187385705 -40138873 - THE1C LTR MaLR 0 375 1 1608 193 142 29 chr3 187385721 187386172 -40138406 + L1MB3 LINE L1 425 926 -5458 504 93 0 0 chr3 187386196 187386271 -40138307 + L1PA7 LINE L1 6080 6154 0 4383 195 24 25 chr3 187386413 187387498 -40137080 - L1MA7 LINE L1 -3 6288 5206 1813 210 72 17 chr3 187387498 187387902 -40136676 + MSTB LTR MaLR 1 426 0 4383 195 24 25 chr3 187387902 187388108 -40136470 - L1MA7 LINE L1 -1085 5206 5001 1036 245 35 0 chr3 187388128 187388385 -40136193 + L1 LINE L1 3944 4209 -1937 1674 225 18 34 chr3 187388395 187388843 -40135735 - L1MA7 LINE L1 -2365 3781 3341 9484 181 23 10 chr3 187388844 187390603 -40133975 + Tigger4(Zombi) DNA MER2_type 2 1784 -947 1864 197 77 24 chr3 187390604 187391162 -40133416 + L1MB3 LINE L1 1386 2078 -4306 1972 230 77 14 chr3 187391168 187392079 -40132499 + L1MB3 LINE L1 2137 3106 -3276 2454 90 0 6 chr3 187392094 187392439 -40132139 + L1P LINE L1 3654 3996 -2150 931 270 38 11 chr3 187392440 187392884 -40131694 + L1MB3 LINE L1 3118 3573 -2809 6737 93 17 8 chr3 187392884 187393882 -40130696 - L1PA7 LINE L1 -812 5334 4328 6103 73 9 4 chr3 187393882 187394693 -40129885 + L1PA7 LINE L1 5330 6151 -3 887 238 62 7 chr3 187394694 187394967 -40129611 + L1MB3 LINE L1 3613 3900 -2482 1109 157 157 4 chr3 187394968 187395197 -40129381 + MER21A LTR ERV1 1 264 -667 2957 151 59 19 chr3 187395202 187395731 -40128847 + MER21A LTR ERV1 376 925 -6 1582 220 34 0 chr3 187395742 187396120 -40128458 + L1MB3 LINE L1 3902 4292 -2090 3380 195 72 37 chr3 187396122 187397044 -40127534 + L1MB3 LINE L1 5468 6419 0 2506 328 65 35 chr3 187397094 187398285 -40126293 + HERV16 LTR ERVL 1665 2890 -2106 21 0 0 0 chr3 187398425 187398446 -40126132 + AT_rich Low_complexity Low_complexity 1 21 0 1948 141 3 10 chr3 187398679 187398983 -40125595 - AluSx SINE Alu -10 302 1 346 308 52 41 chr3 187399340 187399512 -40125066 - HERVL LTR ERVL -1884 3770 3597 4695 161 39 50 chr3 187399654 187400639 -40123939 + Tigger3b DNA MER2_type 257 1230 -1 1061 229 43 66 chr3 187400824 187401217 -40123361 - LTR52 LTR ERVL -33 388 5 200 222 0 0 chr3 187401661 187401706 -40122872 + (TAA)n Simple_repeat Simple_repeat 2 46 0 26 0 0 0 chr3 187401844 187401870 -40122708 + AT_rich Low_complexity Low_complexity 1 26 0 1726 115 0 0 chr3 187402000 187402234 -40122344 + AluSx SINE Alu 1 234 -78 2016 147 10 0 chr3 187402990 187403289 -40121289 + AluSg SINE Alu 1 302 -8 917 278 12 92 chr3 187403448 187403862 -40120716 + MLT1D-int LTR MaLR 991 1371 0 439 176 70 99 chr3 187403862 187404004 -40120574 + MLT1D LTR MaLR 1 138 -488 22 0 0 0 chr3 187404009 187404031 -40120547 + AT_rich Low_complexity Low_complexity 1 22 0 596 175 90 175 chr3 187404031 187404265 -40120313 + MLT1D LTR MaLR 292 505 0 199 303 11 56 chr3 187405049 187405138 -40119440 + L2 LINE L2 2966 3050 -222 404 203 51 116 chr3 187405693 187405831 -40118747 + FLAM_A SINE Alu 1 129 -4 244 294 24 0 chr3 187405835 187405920 -40118658 - L1ME2 LINE L1 -24 6140 6054 1958 286 49 18 chr3 187405960 187406899 -40117679 - L1M4 LINE L1 -1113 5033 4066 2438 200 60 27 chr3 187407102 187407378 -40117200 + MER73 LTR ERVL 2 268 -376 351 0 0 0 chr3 187407378 187407417 -40117161 + (TG)n Simple_repeat Simple_repeat 1 39 0 231 36 0 0 chr3 187407423 187407451 -40117127 + (GA)n Simple_repeat Simple_repeat 2 29 0 2438 200 60 27 chr3 187407451 187407751 -40116827 + MER73 LTR ERVL 272 604 -40 33 43 0 0 chr3 187409479 187409526 -40115052 + AT_rich Low_complexity Low_complexity 1 47 0 19993 33 2 0 chr3 187409526 187412716 -40111862 - L1PA3 LINE L1 0 6155 2959 1503 145 113 28 chr3 187412897 187413180 -40111398 - AluSx SINE Alu 0 312 6 22 0 0 0 chr3 187413210 187413232 -40111346 + AT_rich Low_complexity Low_complexity 1 22 0 220 376 36 12 chr3 187413386 187413551 -40111027 - MIR SINE MIR -2 260 92 21 0 0 0 chr3 187415141 187415162 -40109416 + AT_rich Low_complexity Low_complexity 1 21 0 337 309 66 20 chr3 187415606 187415758 -40108820 + MER5A DNA MER1_type 30 188 -1 31 0 0 0 chr3 187416284 187416315 -40108263 + AT_rich Low_complexity Low_complexity 1 31 0 1372 142 37 0 chr3 187416688 187416956 -40107622 + L1MA4 LINE L1 6023 6300 0 2038 153 35 42 chr3 187416995 187417228 -40107350 + MER57A LTR ERV1 1 231 -172 2015 116 3 41 chr3 187417228 187417546 -40107032 - AluSq SINE Alu -7 306 1 2038 153 35 42 chr3 187417546 187417716 -40106862 + MER57A LTR ERV1 231 401 -2 2008 155 11 27 chr3 187418552 187418919 -40105659 - MER39 LTR ERV1 0 707 347 297 321 38 43 chr3 187419169 187419353 -40105225 + MER5A DNA MER1_type 1 183 -6 214 405 54 12 chr3 187419979 187420147 -40104431 + L2 LINE L2 1093 1267 -2047 201 167 0 0 chr3 187420168 187420204 -40104374 + A-rich Low_complexity Low_complexity 1 36 0 1695 241 107 12 chr3 187420544 187421132 -40103446 + LTR48B LTR ERV1 1 644 0 28 48 0 0 chr3 187421451 187421493 -40103085 + AT_rich Low_complexity Low_complexity 1 42 0 1408 245 76 25 chr3 187422307 187422743 -40101835 + MER39 LTR ERV1 250 707 0 656 203 89 84 chr3 187423147 187423516 -40101062 + LTR21B LTR ERV1 68 438 0 1417 237 55 15 chr3 187423532 187424065 -40100513 + HERVFH21 LTR ERV1 4 578 -5951 * 16693 187 21 22 chr3 187424061 187428821 -40095757 + HERVFH21 LTR ERV1 541 5333 -1196 720 275 0 5 chr3 187429145 187429338 -40095240 + LTR19-int LTR ERV1 4953 5144 -442 5983 194 47 25 chr3 187429596 187430463 -40094115 + L1M1 LINE L1 3427 4273 -2027 243 0 0 0 chr3 187430463 187430490 -40094088 + (CA)n Simple_repeat Simple_repeat 2 28 0 5983 194 47 25 chr3 187430490 187431730 -40092848 + L1M1 LINE L1 4273 5749 -551 2036 221 67 4 chr3 187431730 187432209 -40092369 - LTR22 LTR ERVK 0 509 1 30932 100 10 1 chr3 187432209 187436447 -40088131 - HERVK22 LTR ERVK 0 6837 2562 237 182 0 0 chr3 187436687 187436742 -40087836 + CT-rich Low_complexity Low_complexity 3 57 0 301 368 39 11 chr3 187437470 187437652 -40086926 - MIR SINE MIR -68 194 8 3613 221 111 69 chr3 187438167 187439366 -40085212 - L1 LINE L1 -3049 3279 2133 210 37 0 0 chr3 187439366 187439393 -40085185 + (TTG)n Simple_repeat Simple_repeat 2 28 0 3613 221 111 69 chr3 187439393 187439953 -40084625 - L1 LINE L1 -4195 2133 1598 212 0 36 0 chr3 187439953 187439981 -40084597 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 3613 221 111 69 chr3 187439981 187440085 -40084493 - L1 LINE L1 -4730 1598 1500 5825 50 1 3 chr3 187440085 187440805 -40083773 + L1PA5 LINE L1 5436 6154 0 338 74 19 0 chr3 187440807 187440861 -40083717 - LTR38B LTR ERV1 -555 55 1 631 105 24 32 chr3 187440861 187440985 -40083593 + L1MB3 LINE L1 6061 6183 0 3613 221 111 69 chr3 187440985 187441980 -40082598 - L1 LINE L1 -4828 1500 96 3179 100 9 0 chr3 187441980 187442020 -40082558 - MLT2A1 LTR ERVL 0 444 406 264 30 0 0 chr3 187442020 187442053 -40082525 + (CA)n Simple_repeat Simple_repeat 2 34 0 3179 100 9 0 chr3 187442053 187442452 -40082126 - MLT2A1 LTR ERVL -38 406 1 3613 221 111 69 chr3 187442452 187442537 -40082041 - L1 LINE L1 -6232 96 16 1541 203 13 17 chr3 187443085 187443386 -40081192 + AluJb SINE Alu 2 301 -11 1952 168 18 0 chr3 187443947 187444281 -40080297 - MER57A LTR ERV1 -61 342 3 1484 106 13 30 chr3 187444283 187444518 -40080060 - MER57A-int LTR ERV1 0 7537 7307 754 139 21 42 chr3 187444519 187444663 -40079915 - LTR54B LTR ERV1 -355 143 3 14216 101 46 33 chr3 187444684 187446547 -40078031 - MER57A-int LTR ERV1 -400 7137 5109 329 47 0 0 chr3 187446547 187446590 -40077988 + MADE1 DNA Mariner 1 43 -37 14216 101 46 33 chr3 187446590 187447463 -40077115 - MER57A-int LTR ERV1 -2428 5109 4248 914 201 53 5 chr3 187447460 187447669 -40076909 + MER57-int LTR ERV1 672 890 -6647 * 189 175 0 0 chr3 187447859 187447899 -40076679 + (TATATG)n Simple_repeat Simple_repeat 1 40 0 2373 79 3 0 chr3 187448021 187448324 -40076254 + AluY SINE Alu 1 304 -7 1137 209 15 0 chr3 187448462 187448721 -40075857 - L1MA4 LINE L1 -697 5603 5341 * 2184 149 13 10 chr3 187448719 187449109 -40075469 + L1MA4 LINE L1 5611 6001 -299 * 14313 115 22 8 chr3 187449106 187451356 -40073222 + L1P LINE L1 2624 4904 -1242 1574 226 86 45 chr3 187452267 187452680 -40071898 + MLT1D LTR MaLR 91 505 0 24 53 0 0 chr3 187453873 187453911 -40070667 + AT_rich Low_complexity Low_complexity 1 38 0 677 269 24 23 chr3 187454168 187454463 -40070115 + MLT2D LTR ERVL 1 366 -48 2494 166 31 2 chr3 187454724 187455241 -40069337 - L1MA4 LINE L1 -15 6285 5754 * 6403 82 26 0 chr3 187455239 187456431 -40068147 - L1PA8 LINE L1 -7 6165 4973 347 269 84 76 chr3 187457378 187457585 -40066993 - MLT1I LTR MaLR -25 384 173 1234 289 111 27 chr3 187457585 187458097 -40066481 + MLT1H1 LTR MaLR 1 555 0 347 269 84 76 chr3 187458097 187458164 -40066414 - MLT1I LTR MaLR -236 173 108 273 77 26 0 chr3 187459594 187459633 -40064945 - MER116 DNA Mariner -3 77 38 302 329 7 43 chr3 187459773 187459913 -40064665 - L2 LINE L2 0 3313 3179 2134 92 3 23 chr3 187461120 187461424 -40063154 + AluSp SINE Alu 1 298 -15 239 359 77 48 chr3 187462979 187463227 -40061351 - MLT1I LTR MaLR -6 403 149 22 0 0 0 chr3 187464042 187464064 -40060514 + AT_rich Low_complexity Low_complexity 1 22 0 25 51 0 0 chr3 187464118 187464157 -40060421 + AT_rich Low_complexity Low_complexity 1 39 0 275 231 88 54 chr3 187464164 187464311 -40060267 - MLT1G LTR MaLR 0 590 439 825 251 134 31 chr3 187464517 187464876 -40059702 + MSTD LTR MaLR 1 396 0 459 52 0 0 chr3 187466256 187466314 -40058264 + (TG)n Simple_repeat Simple_repeat 2 59 0 237 309 62 0 chr3 187467478 187467575 -40057003 - HAL1 LINE L1 -838 1669 1567 219 349 46 18 chr3 187468369 187468478 -40056100 + MIR SINE MIR 21 132 -130 2021 134 7 0 chr3 187468857 187469149 -40055429 - AluSg SINE Alu -16 294 1 412 258 8 31 chr3 187469371 187469499 -40055079 + L1MC5 LINE L1 7708 7832 -129 404 286 142 26 chr3 187469835 187470216 -40054362 - L1M4c LINE L1 -4820 1720 1296 224 290 35 76 chr3 187470909 187471054 -40053524 + L2 LINE L2 2920 3058 -214 325 367 84 27 chr3 187471774 187472142 -40052436 - L2 LINE L2 -1 3312 2924 203 156 133 0 chr3 187472156 187472201 -40052377 - MER91B DNA MER1_type -129 61 11 * 790 353 106 31 chr3 187472194 187472829 -40051749 - L2 LINE L2 -405 2909 2228 263 353 126 18 chr3 187472875 187473042 -40051536 - MIR SINE MIR -75 187 3 713 216 111 20 chr3 187473276 187473475 -40051103 + MER20 DNA MER1_type 1 217 -2 323 313 0 0 chr3 187473569 187473652 -40050926 + LTR67 LTR ERVL 2 84 -473 180 0 0 0 chr3 187473698 187473718 -40050860 + (T)n Simple_repeat Simple_repeat 1 20 0 256 346 66 7 chr3 187473928 187474064 -40050514 + LTR67 LTR ERVL 389 532 -25 251 102 68 0 chr3 187474330 187474389 -40050189 - LTR66 LTR ERVL -149 461 399 243 61 0 0 chr3 187474390 187474423 -40050155 + (CA)n Simple_repeat Simple_repeat 2 34 0 1095 131 0 4 chr3 187475677 187475892 -40048686 - L1PB1 LINE L1 0 6151 5896 21 71 0 0 chr3 187476219 187476261 -40048317 + AT_rich Low_complexity Low_complexity 1 42 0 1149 227 148 95 chr3 187476417 187476910 -40047668 - MLT2B1 LTR ERVL -1 519 1 30 69 0 0 chr3 187477133 187477191 -40047387 + AT_rich Low_complexity Low_complexity 1 58 0 626 174 9 9 chr3 187477530 187477645 -40046933 - FLAM_A SINE Alu -18 124 10 39 74 0 0 chr3 187477670 187477751 -40046827 + AT_rich Low_complexity Low_complexity 1 81 0 204 162 27 0 chr3 187480694 187480731 -40043847 + (TCTA)n Simple_repeat Simple_repeat 4 41 0 21 36 0 0 chr3 187480888 187480916 -40043662 + AT_rich Low_complexity Low_complexity 1 28 0 209 189 0 0 chr3 187482148 187482185 -40042393 + (TG)n Simple_repeat Simple_repeat 1 37 0 439 325 13 6 chr3 187482354 187482511 -40042067 - MIR SINE MIR -1 261 104 4315 175 44 23 chr3 187484226 187485130 -40039448 + MER49 LTR ERV1 1 923 0 216 182 0 0 chr3 187485902 187485946 -40038632 + CT-rich Low_complexity Low_complexity 3 46 0 21 0 0 0 chr3 187487363 187487384 -40037194 + AT_rich Low_complexity Low_complexity 1 21 0 1862 95 39 21 chr3 187487624 187487908 -40036670 - AluSg1 SINE Alu 0 309 21 21 0 0 0 chr3 187488326 187488347 -40036231 + AT_rich Low_complexity Low_complexity 1 21 0 393 315 94 68 chr3 187489018 187489477 -40035101 + L1M2 LINE L1 609 1121 -5728 22 56 0 0 chr3 187489905 187489941 -40034637 + AT_rich Low_complexity Low_complexity 1 36 0 1916 121 32 0 chr3 187490406 187490688 -40033890 + AluSq SINE Alu 9 299 -14 1274 277 50 18 chr3 187490947 187491425 -40033153 + MLT1F LTR MaLR 6 488 -54 902 139 72 0 chr3 187491425 187491605 -40032973 + L1MA8 LINE L1 6074 6266 -25 675 286 63 17 chr3 187491638 187491876 -40032702 + MER63B DNA MER1_type 1 249 -187 11508 94 28 9 chr3 187542062 187543755 -39980823 - HERVH LTR ERV1 -5989 1724 1 2774 81 95 0 chr3 187543757 187544166 -39980412 - LTR7 LTR ERV1 -2 448 1 1122 176 54 9 chr3 187544187 187544409 -39980169 - MER4C-int LTR ERV1 -5502 1096 865 277 176 0 20 chr3 187544409 187544460 -39980118 - LTR49 LTR ERV1 -282 313 264 252 0 0 0 chr3 187544473 187544501 -39980077 + (TC)n Simple_repeat Simple_repeat 1 28 0 2279 149 56 25 chr3 187544503 187545177 -39979401 - MER4C-int LTR ERV1 -5786 812 1 2493 144 79 0 chr3 187545180 187545611 -39978967 - MER4C LTR ERV1 0 465 1 516 310 44 31 chr3 187545653 187546031 -39978547 + L1ME4a LINE L1 5494 5875 -246 263 291 115 27 chr3 187546159 187546307 -39978271 + MLT1J LTR MaLR 6 166 -345 27 49 0 0 chr3 187546562 187546603 -39977975 + AT_rich Low_complexity Low_complexity 1 41 0 901 243 43 0 chr3 187546799 187547009 -39977569 - MER20 DNA MER1_type 0 219 1 1190 223 18 74 chr3 187547110 187547500 -39977078 + MER31A LTR ERV1 2 369 -116 28 48 0 0 chr3 187548341 187548383 -39976195 + AT_rich Low_complexity Low_complexity 1 42 0 291 235 17 9 chr3 187548558 187548673 -39975905 + (TTATA)n Simple_repeat Simple_repeat 1 116 0 29 28 0 0 chr3 187549883 187549919 -39974659 + AT_rich Low_complexity Low_complexity 1 36 0 24 96 0 0 chr3 187552924 187552997 -39971581 + AT_rich Low_complexity Low_complexity 1 73 0 1728 204 114 5 chr3 187554482 187554885 -39969693 + LOR1b LTR ERV1 1 447 -14 617 199 77 63 chr3 187554897 187555118 -39969460 + L1MC2 LINE L1 6103 6326 -18 1140 215 26 0 chr3 187555165 187555398 -39969180 + MER8 DNA MER2_type 1 239 0 2011 124 7 0 chr3 187556429 187556739 -39967839 + AluSq SINE Alu 1 312 0 216 97 0 0 chr3 187557103 187557134 -39967444 + (TG)n Simple_repeat Simple_repeat 2 32 0 255 299 63 56 chr3 187557653 187557818 -39966760 + L1ME LINE L1 5580 5747 -374 27 29 0 0 chr3 187558081 187558115 -39966463 + AT_rich Low_complexity Low_complexity 1 34 0 23 33 0 0 chr3 187559378 187559408 -39965170 + AT_rich Low_complexity Low_complexity 1 30 0 390 253 13 32 chr3 187560175 187560333 -39964245 + L1MCc LINE L1 1260 1414 -5009 * 1058 281 53 83 chr3 187560329 187561611 -39962967 + L1M4 LINE L1 3061 4303 -1843 635 252 109 48 chr3 187561620 187562116 -39962462 + L1M4 LINE L1 4878 5403 -743 1032 253 36 55 chr3 187562193 187562667 -39961911 - L1ME2 LINE L1 -14 6150 5686 638 260 74 58 chr3 187562738 187563222 -39961356 - L1ME LINE L1 -5085 985 494 638 133 159 22 chr3 187563423 187563642 -39960936 + MER1B DNA MER1_type 2 339 0 3021 268 72 38 chr3 187564141 187564421 -39960157 + L1MC4 LINE L1 6359 6628 -1414 1873 176 20 0 chr3 187564421 187564773 -39959805 - MER46B DNA MER2_type 0 236 3 3021 268 72 38 chr3 187564773 187564843 -39959735 + L1MC4 LINE L1 6628 6694 -1348 783 192 39 30 chr3 187564843 187565046 -39959532 + MER3 DNA MER1_type 1 205 -4 3021 268 72 38 chr3 187565046 187566101 -39958477 + L1MC4 LINE L1 6694 7812 -230 3133 178 53 0 chr3 187566216 187566839 -39957739 - L1MC1 LINE L1 -405 5928 5273 1589 179 5 96 chr3 187566839 187567247 -39957331 + L1MC1 LINE L1 5963 6333 0 23 33 0 0 chr3 187567353 187567383 -39957195 + AT_rich Low_complexity Low_complexity 1 30 0 40 37 0 0 chr3 187568258 187568312 -39956266 + AT_rich Low_complexity Low_complexity 1 54 0 1997 93 137 18 chr3 187568434 187568777 -39955801 - MER4C LTR ERV1 0 465 82 2322 153 105 80 chr3 187568785 187569105 -39955473 - HUERS-P2 LTR ERV1 -5 6593 6282 222 118 0 0 chr3 187569105 187569139 -39955439 + (TA)n Simple_repeat Simple_repeat 1 34 0 2322 153 105 80 chr3 187569139 187569458 -39955120 - HUERS-P2 LTR ERV1 -316 6282 5938 3004 146 53 30 chr3 187569458 187569525 -39955053 - LTR19B LTR ERV1 0 580 516 6299 63 42 0 chr3 187569525 187570361 -39954217 + L1PA7 LINE L1 5272 6142 -12 3004 146 53 30 chr3 187570361 187570860 -39953718 - LTR19B LTR ERV1 -64 516 1 9889 175 53 42 chr3 187570860 187571297 -39953281 - HUERS-P2 LTR ERV1 -656 5942 5511 1609 200 10 0 chr3 187571297 187571592 -39952986 - AluSx SINE Alu -14 298 1 9889 175 53 42 chr3 187571592 187573360 -39951218 - HUERS-P2 LTR ERV1 -1087 5511 3705 1821 163 14 3 chr3 187573360 187573649 -39950929 - AluSx SINE Alu -20 292 1 9889 175 53 42 chr3 187573649 187573834 -39950744 - HUERS-P2 LTR ERV1 -2893 3705 3524 905 184 106 3 chr3 187573869 187574166 -39950412 - HUERS-P2 LTR ERV1 -280 6811 2467 * 3330 227 27 26 chr3 187574151 187574918 -39949660 - HUERS-P2 LTR ERV1 -1690 1398 631 519 236 7 69 chr3 187574902 187575046 -39949532 - HUERS-P2 LTR ERV1 -2952 136 2 * 237 224 48 120 chr3 187575047 187575172 -39949406 - LTR28 LTR ERV1 0 1020 905 597 245 43 25 chr3 187575242 187575405 -39949173 - LTR1B LTR ERV1 -318 508 343 291 200 36 36 chr3 187575563 187575673 -39948905 - MER57-int LTR ERV1 -4815 2722 2613 22 56 0 0 chr3 187575673 187575709 -39948869 + AT_rich Low_complexity Low_complexity 1 36 0 3417 76 95 0 chr3 187575736 187576220 -39948358 - LTR6B LTR ERV1 -28 530 1 14166 113 2 2 chr3 187576220 187578987 -39945591 - HERVS71 LTR ERV1 -69 8909 6070 6264 127 2 3 chr3 187578986 187579858 -39944720 - HERVS71 LTR ERV1 -3305 5673 4803 * 22701 104 22 19 chr3 187579841 187581199 -39943379 - HERVS71 LTR ERV1 -5743 3235 1881 234 0 0 0 chr3 187581199 187581225 -39943353 + (TTA)n Simple_repeat Simple_repeat 2 27 0 22701 104 22 19 chr3 187581225 187582636 -39941942 - HERVS71 LTR ERV1 -7097 1881 456 189 0 0 0 chr3 187582636 187582657 -39941921 + (GA)n Simple_repeat Simple_repeat 2 22 0 22701 104 22 19 chr3 187582657 187583111 -39941467 - HERVS71 LTR ERV1 -8522 456 4 3577 74 92 0 chr3 187583114 187583625 -39940953 - LTR6B LTR ERV1 0 558 1 228 253 0 0 chr3 187583626 187583701 -39940877 + (TATATG)n Simple_repeat Simple_repeat 4 78 0 445 195 32 0 chr3 187583782 187583905 -39940673 + (CATATA)n Simple_repeat Simple_repeat 5 131 0 2593 81 108 12 chr3 187583908 187584317 -39940261 - LTR7 LTR ERV1 -2 448 1 2164 84 106 11 chr3 187584317 187584675 -39939903 - HERVH LTR ERV1 0 7713 7322 1324 131 23 14 chr3 187584673 187584894 -39939684 - HERVH LTR ERV1 -1894 5819 5597 * 4336 136 5 1 chr3 187584891 187585551 -39939027 - HERVH LTR ERV1 -2564 5149 4488 3158 133 6 6 chr3 187585553 187586055 -39938523 - HERVH LTR ERV1 -3720 3993 3492 903 135 20 0 chr3 187586045 187586193 -39938385 - HERVH LTR ERV1 -4423 3290 3140 * 2472 135 10 12 chr3 187586187 187586594 -39937984 - HERVH LTR ERV1 -4726 2987 2582 29 0 0 0 chr3 187586723 187586752 -39937826 + AT_rich Low_complexity Low_complexity 1 29 0 306 0 0 0 chr3 187587014 187587048 -39937530 + (CA)n Simple_repeat Simple_repeat 2 35 0 1789 206 11 8 chr3 187587619 187587983 -39936595 + MLT1A1 LTR MaLR 1 365 0 24 53 0 0 chr3 187589336 187589374 -39935204 + AT_rich Low_complexity Low_complexity 1 38 0 388 346 93 9 chr3 187590537 187590751 -39933827 - MIR SINE MIR -18 244 13 207 0 0 0 chr3 187590821 187590844 -39933734 + (TG)n Simple_repeat Simple_repeat 2 24 0 763 243 53 29 chr3 187590848 187591054 -39933524 + MIR SINE MIR 2 212 -50 21 0 0 0 chr3 187591545 187591566 -39933012 + AT_rich Low_complexity Low_complexity 1 21 0 1392 268 11 20 chr3 187591660 187592015 -39932563 - MER77 LTR ERV1 0 605 254 731 299 57 100 chr3 187592061 187592619 -39931959 + MER77 LTR ERV1 60 601 -4 657 222 12 36 chr3 187592687 187592854 -39931724 - MER77 LTR ERV1 -361 244 82 1576 200 39 28 chr3 187592979 187593339 -39931239 + MLT1B LTR MaLR 27 390 0 181 368 0 0 chr3 187594021 187594097 -39930481 - MIR SINE MIR -11 251 176 1041 164 46 15 chr3 187594682 187594877 -39929701 + AluJo SINE Alu 1 201 -111 21 0 0 0 chr3 187595391 187595412 -39929166 + AT_rich Low_complexity Low_complexity 1 21 0 248 183 0 17 chr3 187595821 187595881 -39928697 + GA-rich Low_complexity Low_complexity 2 60 0 1945 100 0 42 chr3 187596083 187596372 -39928206 - AluSx SINE Alu -35 277 1 1155 205 191 7 chr3 187596397 187596680 -39927898 - MER1B DNA MER1_type 0 337 3 27 0 0 0 chr3 187596742 187596769 -39927809 + GC_rich Low_complexity Low_complexity 1 27 0 228 217 0 0 chr3 187597227 187597296 -39927282 + AluJ/monomer SINE Alu 237 305 0 183 261 0 62 chr3 187597680 187597745 -39926833 + L2 LINE L2 3252 3312 -1 264 248 37 22 chr3 187597770 187597860 -39926718 + MIR SINE MIR 51 142 -66 2215 107 0 7 chr3 187598408 187598717 -39925861 + AluSc SINE Alu 1 307 -2 29 0 0 0 chr3 187598915 187598944 -39925634 + AT_rich Low_complexity Low_complexity 1 29 0 1861 125 10 28 chr3 187599052 187599362 -39925216 + AluSq SINE Alu 1 305 0 327 353 90 12 chr3 187601117 187601284 -39923294 + MER5A DNA MER1_type 2 181 -8 883 244 9 38 chr3 187601699 187601912 -39922666 + MER20 DNA MER1_type 13 219 0 23 0 0 0 chr3 187601926 187601949 -39922629 + AT_rich Low_complexity Low_complexity 1 23 0 2161 103 7 0 chr3 187602121 187602434 -39922144 + AluSx SINE Alu 1 312 0 262 278 62 0 chr3 187602439 187602536 -39922042 - MIR SINE MIR -103 159 57 2035 116 0 4 chr3 187602716 187602993 -39921585 - AluSq SINE Alu -14 299 24 22 35 0 0 chr3 187603633 187603662 -39920916 + AT_rich Low_complexity Low_complexity 1 29 0 27 49 0 0 chr3 187603756 187603797 -39920781 + AT_rich Low_complexity Low_complexity 1 41 0 25 0 0 0 chr3 187604461 187604486 -39920092 + AT_rich Low_complexity Low_complexity 1 25 0 426 203 25 0 chr3 187604717 187604835 -39919743 + (TA)n Simple_repeat Simple_repeat 1 121 0 2532 47 0 28 chr3 187604988 187605307 -39919271 + AluY SINE Alu 1 310 -1 23 0 0 0 chr3 187605395 187605418 -39919160 + AT_rich Low_complexity Low_complexity 1 23 0 3728 152 25 3 chr3 187605703 187606342 -39918236 - MER39B LTR ERV1 0 653 1 774 245 16 5 chr3 187607061 187607245 -39917333 + MIR SINE MIR 32 217 -45 765 231 107 4 chr3 187607511 187607792 -39916786 + MER33 DNA MER1_type 4 313 -11 561 228 114 29 chr3 187607914 187608160 -39916418 + LTR37B LTR ERV1 198 464 -4 813 304 80 15 chr3 187608780 187609119 -39915459 + MLT1A1 LTR MaLR 3 363 -2 23 0 0 0 chr3 187609392 187609415 -39915163 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 187610746 187610769 -39913809 + AT_rich Low_complexity Low_complexity 1 23 0 2016 118 3 33 chr3 187610932 187611236 -39913342 + AluSq SINE Alu 1 295 -18 204 175 16 48 chr3 187611244 187611276 -39913302 + A-rich Low_complexity Low_complexity 4 35 -29 537 140 20 0 chr3 187611276 187611376 -39913202 + L1PA16 LINE L1 6065 6166 0 204 175 16 48 chr3 187611376 187611406 -39913172 + A-rich Low_complexity Low_complexity 35 64 0 231 36 0 0 chr3 187611700 187611728 -39912850 + (TG)n Simple_repeat Simple_repeat 1 28 0 1983 217 40 5 chr3 187611844 187612264 -39912314 + MSTB2 LTR MaLR 23 457 0 21 0 0 0 chr3 187612639 187612660 -39911918 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 187612752 187612782 -39911796 + AT_rich Low_complexity Low_complexity 1 30 0 1788 153 58 19 chr3 187612794 187613153 -39911425 - THE1C LTR MaLR 0 375 3 9843 139 28 8 chr3 187613155 187614689 -39909889 - THE1C-int LTR MaLR -1 1579 15 1641 151 60 46 chr3 187614689 187615059 -39909519 - THE1C LTR MaLR 0 375 1 2481 223 35 20 chr3 187615163 187615859 -39908719 + MER67C LTR ERV1 5 710 0 22 0 0 0 chr3 187616158 187616180 -39908398 + AT_rich Low_complexity Low_complexity 1 22 0 29 47 0 0 chr3 187616510 187616553 -39908025 + AT_rich Low_complexity Low_complexity 1 43 0 41 72 0 0 chr3 187616687 187616770 -39907808 + AT_rich Low_complexity Low_complexity 1 83 0 764 217 40 15 chr3 187617231 187617429 -39907149 - LTR56 LTR ERV1 -204 241 39 1419 238 55 39 chr3 187617695 187618409 -39906169 + L1MB8 LINE L1 891 1616 -4926 556 167 94 7 chr3 187618402 187618540 -39906038 + L1MB8 LINE L1 4448 4597 -2047 * 1880 203 82 50 chr3 187618576 187619114 -39905464 - LTR49 LTR ERV1 -40 555 1 2399 208 126 80 chr3 187619114 187620208 -39904370 + L1MB8 LINE L1 4600 5744 -900 260 208 14 69 chr3 187620209 187620281 -39904297 - LTR8 LTR ERV1 0 691 624 1003 228 0 8 chr3 187620317 187620558 -39904020 + L1MB8 LINE L1 6002 6240 -442 391 172 16 90 chr3 187620559 187620681 -39903897 - MER34B LTR ERV1 0 565 453 287 252 69 64 chr3 187620681 187620899 -39903679 - MER34B LTR ERV1 -81 484 266 242 226 0 0 chr3 187621092 187621145 -39903433 + L1MB8 LINE L1 6237 6289 -393 1082 221 147 11 chr3 187621178 187621526 -39903052 + L1MB8 LINE L1 6277 6671 -5 372 21 0 0 chr3 187622121 187622168 -39902410 + MADE1 DNA Mariner 1 47 -33 33 80 0 0 chr3 187623077 187623152 -39901426 + AT_rich Low_complexity Low_complexity 1 75 0 21 36 0 0 chr3 187623175 187623203 -39901375 + AT_rich Low_complexity Low_complexity 1 28 0 32 26 0 0 chr3 187623423 187623462 -39901116 + AT_rich Low_complexity Low_complexity 1 39 0 2175 110 0 10 chr3 187624203 187624504 -39900074 + AluSq SINE Alu 1 298 -15 27 73 0 0 chr3 187625474 187625529 -39899049 + AT_rich Low_complexity Low_complexity 1 55 0 2236 111 3 0 chr3 187625905 187626211 -39898367 - AluSx SINE Alu -5 307 1 2378 95 3 0 chr3 187626742 187627069 -39897509 - pTR5 LTR ERV1 -2042 396 69 321 224 31 20 chr3 187627072 187627170 -39897408 - LTR30 LTR ERV1 -80 642 544 3388 149 66 62 chr3 187627170 187628111 -39896467 - pTR5 LTR ERV1 -413 2025 742 183 261 0 22 chr3 187628114 187628160 -39896418 - L2 LINE L2 -198 3074 3030 585 328 75 12 chr3 187629061 187629564 -39895014 + ERVL LTR ERVL 4794 5335 -150 299 136 17 0 chr3 187629599 187629658 -39894920 + (TCTA)n Simple_repeat Simple_repeat 2 61 0 283 277 64 0 chr3 187630335 187630429 -39894149 + LTR67 LTR ERVL 458 557 0 23 33 0 0 chr3 187631241 187631271 -39893307 + AT_rich Low_complexity Low_complexity 1 30 0 446 181 29 19 chr3 187632436 187632541 -39892037 + MER53 DNA DNA 4 109 -80 455 176 0 11 chr3 187632631 187632722 -39891856 + MER53 DNA DNA 98 187 -2 197 132 26 0 chr3 187635278 187635316 -39889262 + T-rich Low_complexity Low_complexity 4 42 0 2905 90 2 12 chr3 187635316 187635728 -39888850 - L1PA7 LINE L1 0 6154 5747 18458 98 14 2 chr3 187635821 187638895 -39885683 - L1PA7 LINE L1 -424 5730 2630 1235 160 0 0 chr3 187639818 187640005 -39884573 - L1PA16 LINE L1 -9 6157 5971 378 243 86 53 chr3 187640079 187640231 -39884347 + MIR SINE MIR 91 247 -15 2690 84 52 3 chr3 187640658 187641039 -39883539 + MLT2A1 LTR ERVL 1 400 -44 219 190 0 0 chr3 187641056 187641114 -39883464 + (TA)n Simple_repeat Simple_repeat 2 59 0 43 50 0 40 chr3 187641576 187641614 -39882964 + AT_rich Low_complexity Low_complexity 1 39 -58 1930 118 4 4 chr3 187641614 187641886 -39882692 + AluSx SINE Alu 1 272 -40 43 50 0 40 chr3 187641886 187641948 -39882630 + AT_rich Low_complexity Low_complexity 39 97 0 192 257 40 27 chr3 187643222 187643296 -39881282 - MIR SINE MIR -146 116 42 336 251 97 77 chr3 187644582 187644777 -39879801 - L1ME3A LINE L1 -45 6125 5927 * 714 275 103 34 chr3 187644759 187645325 -39879253 - L1ME3A LINE L1 -759 5387 4783 521 258 36 18 chr3 187645326 187645493 -39879085 - MIR SINE MIR -49 213 44 288 0 0 0 chr3 187645883 187645915 -39878663 + (A)n Simple_repeat Simple_repeat 1 32 0 2192 104 3 7 chr3 187645995 187646302 -39878276 - AluSc SINE Alu -3 306 1 1620 209 10 29 chr3 187647847 187648230 -39876348 - L1PA15 LINE L1 -8 6157 5782 216 97 0 0 chr3 187648298 187648329 -39876249 + (TG)n Simple_repeat Simple_repeat 1 31 0 211 239 0 0 chr3 187650182 187650228 -39874350 + T-rich Low_complexity Low_complexity 1 46 0 2127 128 3 0 chr3 187650320 187650626 -39873952 + AluSx SINE Alu 4 310 -2 1002 264 47 48 chr3 187650701 187651299 -39873279 + L1M4 LINE L1 3841 4437 -1709 207 0 0 0 chr3 187651431 187651454 -39873124 + (TTTAA)n Simple_repeat Simple_repeat 3 25 0 1357 127 0 0 chr3 187651457 187651662 -39872916 - L1PB1 LINE L1 -13 6138 5934 38 22 0 0 chr3 187651745 187651790 -39872788 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr3 187652155 187652176 -39872402 + AT_rich Low_complexity Low_complexity 1 21 0 281 301 16 49 chr3 187652567 187652690 -39871888 + L2 LINE L2 794 912 -2402 189 457 0 0 chr3 187652892 187652986 -39871592 + L2 LINE L2 1159 1252 -2062 229 322 8 17 chr3 187653315 187653433 -39871145 - L1MC4 LINE L1 -1482 6560 6444 683 206 183 6 chr3 187653730 187653910 -39870668 - MER45R DNA AcHobo -256 1325 1114 371 196 22 0 chr3 187653952 187654044 -39870534 + (CATATA)n Simple_repeat Simple_repeat 5 98 0 1421 210 0 7 chr3 187654054 187654344 -39870234 - AluJb SINE Alu -24 288 1 476 170 28 0 chr3 187654346 187654452 -39870126 - MER45R DNA AcHobo -527 1054 946 5520 189 30 65 chr3 187654474 187657013 -39867565 - L1MA4 LINE L1 -8 6292 3841 1077 177 46 21 chr3 187657016 187657253 -39867325 - MER45R DNA AcHobo -823 758 516 303 200 17 0 chr3 187657484 187657544 -39867034 - L1ME LINE L1 -267 5854 5794 1176 269 86 58 chr3 187657699 187658306 -39866272 + MLT1E3 LTR MaLR 1 624 0 22 0 0 0 chr3 187658650 187658672 -39865906 + AT_rich Low_complexity Low_complexity 1 22 0 1737 173 3 3 chr3 187658925 187659231 -39865347 - AluSx SINE Alu 0 312 7 616 151 28 0 chr3 187659371 187659477 -39865101 + AluJo/FLAM SINE Alu 1 109 -203 * 682 207 0 0 chr3 187659471 187659606 -39864972 + AluSp/q SINE Alu 178 312 -1 36 53 0 0 chr3 187660097 187660154 -39864424 + AT_rich Low_complexity Low_complexity 1 57 0 507 263 64 49 chr3 187660497 187660763 -39863815 + L1MD2 LINE L1 6080 6349 -10 1395 173 51 0 chr3 187660958 187661212 -39863366 - AluJb SINE Alu 0 312 46 238 364 40 20 chr3 187662233 187662332 -39862246 - L2 LINE L2 0 3272 3172 1282 297 66 12 chr3 187662478 187662996 -39861582 - MER90 LTR ERV1 -24 551 6 376 267 0 35 chr3 187663185 187663357 -39861221 + (CATATA)n Simple_repeat Simple_repeat 2 167 0 419 381 0 0 chr3 187663357 187663512 -39861066 + (TATATG)n Simple_repeat Simple_repeat 3 157 0 1853 172 39 3 chr3 187663522 187663853 -39860725 - MER7A DNA MER2_type -2 344 4 2922 253 53 68 chr3 187663853 187664625 -39859953 + L1M4 LINE L1 2447 3186 -2960 1875 276 36 32 chr3 187664625 187665215 -39859363 + MLT1E LTR MaLR 2 593 0 2922 253 53 68 chr3 187665215 187665998 -39858580 + L1M4 LINE L1 3186 3979 -2167 1259 249 73 136 chr3 187665985 187666426 -39858152 + L1MD3 LINE L1 5753 6220 -1822 * 186 71 0 0 chr3 187666426 187666454 -39858124 + (TA)n Simple_repeat Simple_repeat 2 29 0 1259 249 73 136 chr3 187666454 187667432 -39857146 + L1MD3 LINE L1 6220 7083 -959 376 234 72 9 chr3 187667461 187667572 -39857006 - L1MD3 LINE L1 -745 7250 7133 268 73 24 0 chr3 187667575 187667616 -39856962 + MER4A LTR ERV1 3 44 -620 1572 219 92 27 chr3 187667620 187668067 -39856511 + L1MD3 LINE L1 7487 7962 -33 13295 212 15 2 chr3 187669203 187672917 -39851661 - L1PA15 LINE L1 -6 7597 3842 1928 152 131 8 chr3 187672917 187673298 -39851280 + MSTA LTR MaLR 1 428 0 8689 161 21 39 chr3 187673300 187674901 -39849677 + MSTA-int LTR MaLR 3 1575 -5 1520 218 143 8 chr3 187674906 187675283 -39849295 + MSTA LTR MaLR 1 428 0 5987 251 47 25 chr3 187675285 187677827 -39846751 - L1PA15 LINE L1 -3740 3844 1269 21 95 0 0 chr3 187679148 187679211 -39845367 + AT_rich Low_complexity Low_complexity 1 63 0 347 292 80 15 chr3 187680866 187681003 -39843575 + MIR SINE MIR 46 191 -71 30 69 0 0 chr3 187681435 187681493 -39843085 + AT_rich Low_complexity Low_complexity 1 58 0 4755 202 32 13 chr3 187682135 187683152 -39841426 - L1MB3 LINE L1 0 6183 5123 2293 75 0 29 chr3 187683152 187683458 -39841120 + AluY SINE Alu 1 297 -14 4755 202 32 13 chr3 187683458 187684061 -39840517 - L1MB3 LINE L1 -1060 5123 4533 1651 151 0 4 chr3 187684061 187684319 -39840259 + AluSq SINE Alu 1 257 -56 700 255 13 6 chr3 187684320 187684477 -39840101 + LTR8 LTR ERV1 534 691 0 243 0 0 0 chr3 187684484 187684511 -39840067 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2205 116 35 64 chr3 187684511 187684842 -39839736 - L1P4 LINE L1 -484 5681 5361 2056 123 7 0 chr3 187684842 187685127 -39839451 + AluSq SINE Alu 1 287 -26 2205 116 35 64 chr3 187685127 187685211 -39839367 - L1P4 LINE L1 -804 5361 5276 2357 234 18 0 chr3 187685236 187685744 -39838834 - LTR53 LTR ERVL 0 519 3 26 0 0 0 chr3 187686202 187686228 -39838350 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr3 187687119 187687149 -39837429 + AT_rich Low_complexity Low_complexity 1 30 0 201 171 0 0 chr3 187687302 187687337 -39837241 + (TA)n Simple_repeat Simple_repeat 2 36 0 5002 166 39 5 chr3 187687521 187688681 -39835897 - L1PA16 LINE L1 0 6166 4970 25 51 0 0 chr3 187688832 187688871 -39835707 + AT_rich Low_complexity Low_complexity 1 39 0 2164 112 0 0 chr3 187690084 187690370 -39834208 + AluSq SINE Alu 3 288 -25 29 70 0 0 chr3 187690527 187690584 -39833994 + AT_rich Low_complexity Low_complexity 1 57 0 614 141 0 10 chr3 187691093 187691192 -39833386 + MER4A LTR ERV1 1 98 -566 1559 156 3 77 chr3 187691192 187691565 -39833013 + MER4A LTR ERV1 261 664 0 1866 97 94 67 chr3 187691568 187691780 -39832798 + MER4A-int LTR ERV1 1 227 -6371 1991 126 0 0 chr3 187691780 187692049 -39832529 - AluSx SINE Alu -23 289 21 1866 97 94 67 chr3 187692049 187692178 -39832400 + MER4A-int LTR ERV1 227 351 -6247 848 204 36 36 chr3 187692185 187692464 -39832114 + MER4A-int LTR ERV1 3403 3681 -2917 * 15293 121 53 18 chr3 187692463 187695130 -39829448 + MER4A-int LTR ERV1 3837 6597 -1 696 71 10 10 chr3 187695134 187695232 -39829346 + MER4A LTR ERV1 1 98 -566 1513 170 3 80 chr3 187695235 187695606 -39828972 + MER4A LTR ERV1 264 664 0 372 302 72 21 chr3 187695610 187695796 -39828782 + MLT1H LTR MaLR 1 166 -383 258 225 255 28 chr3 187695884 187696034 -39828544 + MLT1H1 LTR MaLR 364 553 -2 192 77 0 0 chr3 187696907 187696933 -39827645 + (A)n Simple_repeat Simple_repeat 1 26 0 25 0 0 0 chr3 187697151 187697176 -39827402 + AT_rich Low_complexity Low_complexity 1 25 0 237 308 15 0 chr3 187697221 187697354 -39827224 + (TA)n Simple_repeat Simple_repeat 1 135 0 7339 236 42 11 chr3 187697403 187700868 -39823710 - L1MC1 LINE L1 0 6613 3036 6855 183 71 30 chr3 187700866 187702525 -39822053 - L1MC1 LINE L1 -4561 1865 50 * 6514 202 164 12 chr3 187702820 187704344 -39820234 + MER52A LTR ERV1 1 1755 0 586 221 0 16 chr3 187704363 187704490 -39820088 - MLT1E LTR MaLR -8 585 461 270 245 69 29 chr3 187706510 187706587 -39817991 - LTR16C LTR ERVL 0 491 408 1616 202 36 22 chr3 187706587 187706943 -39817635 + MLT1A1 LTR MaLR 5 365 0 270 245 69 29 chr3 187706943 187706967 -39817611 - LTR16C LTR ERVL -83 408 386 1683 202 63 0 chr3 187706979 187707345 -39817233 + MLT1A1-int LTR MaLR 44 432 -1303 1298 199 44 37 chr3 187707345 187707642 -39816936 - AluJo SINE Alu -13 299 1 927 160 6 46 chr3 187707758 187707798 -39816780 - MLT2B3 LTR ERVL 0 554 514 976 23 8 8 chr3 187707798 187707926 -39816652 + (TAGA)n Simple_repeat Simple_repeat 2 129 0 927 160 6 46 chr3 187707926 187708060 -39816518 - MLT2B3 LTR ERVL -40 514 387 1634 248 39 126 chr3 187708073 187709210 -39815368 + MLT1A1-int LTR MaLR 476 1651 0 1624 209 40 11 chr3 187709210 187709559 -39815019 + MLT1A1 LTR MaLR 1 359 -6 2506 230 16 13 chr3 187709574 187709614 -39814964 - MLT2B3 LTR ERVL 0 554 516 470 17 17 0 chr3 187709614 187709673 -39814905 + (TAGA)n Simple_repeat Simple_repeat 2 61 0 2506 230 16 13 chr3 187709673 187710184 -39814394 - MLT2B3 LTR ERVL -38 516 1 23 0 0 0 chr3 187711760 187711783 -39812795 + AT_rich Low_complexity Low_complexity 1 23 0 333 335 110 18 chr3 187712239 187712403 -39812175 + MIR SINE MIR 25 203 -59 404 307 88 21 chr3 187712463 187712655 -39811923 + MIR SINE MIR 46 250 -12 1138 278 86 25 chr3 187712691 187713123 -39811455 + MLT2B1 LTR ERVL 3 460 -60 846 271 48 5 chr3 187713158 187713365 -39811213 + MER82 DNA MER2_type 438 653 0 1768 132 4 21 chr3 187713369 187713650 -39810928 + AluSq SINE Alu 34 309 -4 252 206 23 0 chr3 187713652 187713783 -39810795 + (TA)n Simple_repeat Simple_repeat 2 135 0 1848 229 68 104 chr3 187714398 187715072 -39809506 + MER82 DNA MER2_type 4 653 0 957 159 52 132 chr3 187715163 187715489 -39809089 - L1MA3 LINE L1 0 6305 6006 226 333 75 48 chr3 187716172 187716319 -39808259 + MIR SINE MIR 5 155 -107 1707 212 13 7 chr3 187716676 187717033 -39807545 + MLT1A1 LTR MaLR 4 365 0 301 240 0 53 chr3 187717055 187717130 -39807448 + MER119 DNA MER1_type 513 583 0 701 174 30 60 chr3 187717409 187717576 -39807002 - MER3 DNA MER1_type -85 124 10 779 263 24 5 chr3 187717821 187718030 -39806548 - MER20 DNA MER1_type 0 219 7 391 329 49 24 chr3 187718605 187718769 -39805809 - MER5B DNA MER1_type 0 178 11 294 307 53 33 chr3 187720729 187720879 -39803699 + L2 LINE L2 3158 3310 -3 306 241 23 11 chr3 187720906 187720993 -39803585 + MIR SINE MIR 114 201 -61 220 284 74 42 chr3 187721182 187721277 -39803301 + MER5A DNA MER1_type 91 188 -1 4934 52 3 0 chr3 187721478 187722094 -39802484 - L1PA5 LINE L1 -1 6153 5536 4059 50 0 4 chr3 187722094 187722611 -39801967 + L1P LINE L1 4664 5178 -968 23 54 0 0 chr3 187722895 187722932 -39801646 + AT_rich Low_complexity Low_complexity 1 37 0 441 66 0 0 chr3 187724977 187725038 -39799540 + (TG)n Simple_repeat Simple_repeat 2 62 0 194 250 0 0 chr3 187725096 187725140 -39799438 + L2 LINE L2 1815 1858 -1456 4613 177 18 38 chr3 187725173 187725862 -39798716 - L1PB4 LINE L1 -6 6150 5448 1520 184 25 18 chr3 187725862 187726144 -39798434 + AluJb SINE Alu 1 284 -28 4613 177 18 38 chr3 187726144 187726349 -39798229 - L1PB4 LINE L1 -708 5448 5240 12791 28 1 0 chr3 187726349 187728642 -39795936 - L1PA4 LINE L1 -3 6152 3854 4613 177 18 38 chr3 187728642 187729158 -39795420 - L1PB4 LINE L1 -916 5240 4770 979 205 51 47 chr3 187729160 187729521 -39795057 - MSTB LTR MaLR -2 424 1 232 182 45 0 chr3 187729521 187729565 -39795013 - L1PB4 LINE L1 -1372 4774 4729 6769 220 25 9 chr3 187729575 187730632 -39793946 - L1PB4 LINE L1 -1388 4758 3720 279 0 0 0 chr3 187730632 187730663 -39793915 + (TG)n Simple_repeat Simple_repeat 2 32 0 6769 220 25 9 chr3 187730663 187731020 -39793558 - L1PB4 LINE L1 -2426 3720 3312 686 22 33 0 chr3 187731020 187731110 -39793468 + (GTATG)n Simple_repeat Simple_repeat 2 94 0 6769 220 25 9 chr3 187731110 187731298 -39793280 - L1PB4 LINE L1 -2834 3312 3129 795 263 43 20 chr3 187731363 187731664 -39792914 + L1MDa LINE L1 1867 2174 -4366 966 238 42 14 chr3 187731732 187732187 -39792391 + L1MDa LINE L1 2317 2790 -3750 349 290 55 22 chr3 187732377 187732560 -39792018 + L1MEc LINE L1 1410 1598 -4798 186 268 84 42 chr3 187733664 187733735 -39790843 + MIR SINE MIR 114 187 -75 289 261 22 22 chr3 187734054 187734146 -39790432 + CT-rich Low_complexity Low_complexity 1 92 0 25 83 0 0 chr3 187734518 187734578 -39790000 + AT_rich Low_complexity Low_complexity 1 60 0 27 0 0 0 chr3 187736117 187736144 -39788434 + AT_rich Low_complexity Low_complexity 1 27 0 455 300 75 37 chr3 187736415 187736802 -39787776 + L1MC/D LINE L1 5260 5660 -582 716 199 66 11 chr3 187736802 187737108 -39787470 + MSTD LTR MaLR 1 385 -11 29 0 0 25 chr3 187737157 187737176 -39787402 + AT_rich Low_complexity Low_complexity 1 19 -20 1889 96 0 0 chr3 187737176 187737425 -39787153 + AluY SINE Alu 37 285 -26 29 0 0 25 chr3 187737425 187737445 -39787133 + AT_rich Low_complexity Low_complexity 19 39 0 21 0 0 0 chr3 187737931 187737952 -39786626 + AT_rich Low_complexity Low_complexity 1 21 0 6282 164 13 13 chr3 187738014 187740124 -39784454 - L1MA2 LINE L1 0 7723 5614 3104 184 22 30 chr3 187740124 187740717 -39783861 - MER52A LTR ERV1 0 1755 1168 2898 207 146 22 chr3 187740692 187741403 -39783175 - MER52A LTR ERV1 -956 799 1 * 8317 198 38 10 chr3 187741404 187746680 -39777898 - L1MA2 LINE L1 -1949 5616 27 6774 186 73 64 chr3 187746778 187748413 -39776165 - MER52A LTR ERV1 0 1755 202 1496 257 54 60 chr3 187748416 187748945 -39775633 - L1M4c LINE L1 -4621 2338 1807 1797 159 0 0 chr3 187748945 187749235 -39775343 - AluSx SINE Alu -18 294 5 1496 257 54 60 chr3 187749235 187749801 -39774777 - L1M4c LINE L1 -5152 1807 1221 276 306 73 67 chr3 187749898 187750228 -39774350 - L1M4c LINE L1 -5667 1188 857 413 266 155 40 chr3 187750431 187750657 -39773921 - L1M4c LINE L1 -6579 280 29 305 225 150 25 chr3 187750679 187750759 -39773819 - ERVL LTR ERVL -2667 3097 3008 1097 338 46 21 chr3 187751049 187751567 -39773011 - ERVL LTR ERVL -3094 2670 2140 280 369 51 0 chr3 187751659 187751816 -39772762 - ERVL LTR ERVL -3071 1925 1761 377 380 34 8 chr3 187751930 187752196 -39772382 - ERVL LTR ERVL -4031 1623 1351 21 0 0 0 chr3 187752532 187752553 -39772025 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 187752925 187752949 -39771629 + AT_rich Low_complexity Low_complexity 1 24 0 24 67 0 0 chr3 187753169 187753214 -39771364 + AT_rich Low_complexity Low_complexity 1 45 0 331 333 0 11 chr3 187753398 187753491 -39771087 + L2 LINE L2 3204 3295 -18 23 0 0 0 chr3 187753527 187753550 -39771028 + AT_rich Low_complexity Low_complexity 1 23 0 1641 253 69 33 chr3 187753598 187754238 -39770340 - L1MC4 LINE L1 -142 7900 7238 589 236 43 19 chr3 187754317 187754478 -39770100 - MLT1C LTR MaLR 0 467 303 4582 151 15 1 chr3 187754490 187755270 -39769308 - L1PA16 LINE L1 -10 6156 5366 768 258 63 35 chr3 187755286 187755573 -39769005 - MLT1C LTR MaLR -172 295 1 922 305 23 20 chr3 187755573 187755917 -39768661 - L1MC4 LINE L1 -1027 7015 6671 21 36 0 0 chr3 187756281 187756309 -39768269 + AT_rich Low_complexity Low_complexity 1 28 0 294 229 108 37 chr3 187756338 187756552 -39768026 - L1MEc LINE L1 -3002 3213 2985 234 229 11 75 chr3 187756898 187757086 -39767492 + T-rich Low_complexity Low_complexity 5 180 0 1078 268 71 6 chr3 187757164 187757515 -39767063 - L1ME3A LINE L1 -61 6109 5736 571 294 109 18 chr3 187757562 187757838 -39766740 + L1ME LINE L1 5395 5695 -475 1767 177 0 16 chr3 187757885 187758195 -39766383 - AluSx SINE Alu -7 305 1 347 290 97 4 chr3 187758289 187758548 -39766030 - L1MEc LINE L1 -4846 1550 1268 245 198 62 31 chr3 187758734 187758830 -39765748 - L1MEc LINE L1 -5279 926 828 27 73 0 0 chr3 187761186 187761241 -39763337 + AT_rich Low_complexity Low_complexity 1 55 0 680 52 21 0 chr3 187761934 187762030 -39762548 + (CTATT)n Simple_repeat Simple_repeat 4 101 0 2542 75 0 6 chr3 187762175 187762521 -39762057 - L1PA7 LINE L1 0 6154 5811 305 145 16 0 chr3 187762577 187762639 -39761939 + (TA)n Simple_repeat Simple_repeat 2 64 0 35 54 0 0 chr3 187762641 187762697 -39761881 + AT_rich Low_complexity Low_complexity 1 56 0 554 74 0 12 chr3 187762729 187762810 -39761768 + (TA)n Simple_repeat Simple_repeat 1 80 0 24 53 0 0 chr3 187763102 187763140 -39761438 + AT_rich Low_complexity Low_complexity 1 38 0 456 19 0 0 chr3 187763710 187763763 -39760815 + (CA)n Simple_repeat Simple_repeat 1 53 0 27 62 0 0 chr3 187764498 187764546 -39760032 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr3 187764741 187764765 -39759813 + AT_rich Low_complexity Low_complexity 1 24 0 384 344 108 15 chr3 187764810 187765005 -39759573 + LTR16A LTR ERVL 62 274 -176 3145 306 43 35 chr3 187765039 187766478 -39758100 + HERV16 LTR ERVL 3 1452 -3544 1780 141 23 0 chr3 187766639 187766902 -39757676 + AluSg SINE Alu 9 277 -33 273 57 0 0 chr3 187766903 187766938 -39757640 + (CAAT)n Simple_repeat Simple_repeat 4 38 0 993 353 53 19 chr3 187766940 187767521 -39757057 + HERV16 LTR ERVL 1666 2266 -2730 270 262 48 0 chr3 187767622 187767706 -39756872 + HERV16 LTR ERVL 2288 2375 -2621 934 340 100 52 chr3 187767747 187768825 -39755753 + HERV16 LTR ERVL 2425 3095 -1901 285 330 62 23 chr3 187768974 187769150 -39755428 + HERV16 LTR ERVL 3725 3907 -1747 863 232 17 8 chr3 187769150 187769361 -39755217 + MLT1D LTR MaLR 1 185 -320 1055 95 47 0 chr3 187769410 187769579 -39754999 - L1PA2 LINE L1 -6 6149 5973 368 277 133 58 chr3 187769610 187769798 -39754780 - L1ME LINE L1 -4798 1282 1081 628 276 71 70 chr3 187769810 187769877 -39754701 - L1ME LINE L1 -5036 1225 1160 180 0 0 0 chr3 187769877 187769897 -39754681 + (TTTTG)n Simple_repeat Simple_repeat 5 24 0 628 276 71 70 chr3 187769897 187770481 -39754097 - L1ME LINE L1 -5101 1160 530 397 261 0 0 chr3 187770594 187770682 -39753896 - AluS SINE Alu -214 88 1 4548 180 54 7 chr3 187770682 187771887 -39752691 + L1PA16 LINE L1 4901 6164 -2 256 247 55 0 chr3 187771978 187772051 -39752527 - L1ME LINE L1 -5596 474 398 405 238 61 61 chr3 187772213 187772360 -39752218 - L1ME LINE L1 -5905 165 19 2563 149 14 2 chr3 187772435 187772858 -39751720 + MSTA LTR MaLR 1 428 0 211 373 51 34 chr3 187772871 187772989 -39751589 - L2 LINE L2 -37 3235 3116 523 167 10 10 chr3 187773351 187773453 -39751125 - L1P LINE L1 -1787 4359 4258 6601 47 2 0 chr3 187773454 187774267 -39750311 + L1PA5 LINE L1 5340 6154 0 275 268 36 54 chr3 187774368 187774480 -39750098 - MIR SINE MIR -34 228 119 35 0 0 0 chr3 187774775 187774810 -39749768 + AT_rich Low_complexity Low_complexity 1 35 0 185 374 132 35 chr3 187774821 187775048 -39749530 - L3 LINE CR1 -1270 307 59 237 323 79 24 chr3 187775809 187775936 -39748642 + LTR33A LTR ERVL 54 187 -336 207 217 0 72 chr3 187776283 187776366 -39748212 + T-rich Low_complexity Low_complexity 2 78 0 338 326 107 0 chr3 187776463 187776641 -39747937 - MIR SINE MIR 0 262 66 1753 137 5 106 chr3 187778274 187778661 -39745917 - MER7A DNA MER2_type 0 346 1 202 95 48 0 chr3 187779027 187779069 -39745509 + (CAAA)n Simple_repeat Simple_repeat 2 45 0 925 213 10 48 chr3 187780088 187780295 -39744283 - MER58A DNA MER1_type -1 223 25 381 308 15 103 chr3 187782484 187782679 -39741899 + L3 LINE CR1 1385 1562 -15 190 368 38 0 chr3 187782924 187783030 -39741548 - MIR3 SINE MIR -8 200 91 369 0 0 0 chr3 187783871 187783912 -39740666 + (TC)n Simple_repeat Simple_repeat 2 42 0 284 181 155 35 chr3 187784598 187784714 -39739864 + LTR16C LTR ERVL 362 491 0 2037 125 53 39 chr3 187784864 187785223 -39739355 - THE1B LTR MaLR 0 364 1 25 51 0 0 chr3 187785920 187785959 -39738619 + AT_rich Low_complexity Low_complexity 1 39 0 25 51 0 0 chr3 187786001 187786040 -39738538 + AT_rich Low_complexity Low_complexity 1 39 0 1281 256 67 0 chr3 187786271 187786584 -39737994 - MER58B DNA MER1_type -7 334 1 2310 86 3 0 chr3 187786820 187787112 -39737466 + AluSp SINE Alu 2 294 -19 2377 87 0 3 chr3 187787268 187787579 -39736999 - AluY SINE Alu -1 310 1 211 374 12 12 chr3 187787843 187787926 -39736652 - L3 LINE CR1 -452 1125 1043 203 139 0 47 chr3 187788104 187788147 -39736431 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 216 121 52 17 chr3 187789104 187789162 -39735416 + (TA)n Simple_repeat Simple_repeat 1 60 0 306 73 0 0 chr3 187789188 187789229 -39735349 + (TG)n Simple_repeat Simple_repeat 1 41 0 658 91 0 20 chr3 187789485 187789584 -39734994 - L1MA3 LINE L1 -2 6303 6207 2435 269 67 19 chr3 187789710 187790908 -39733670 - L1ME3A LINE L1 -5 6165 4890 2095 110 0 27 chr3 187790908 187791207 -39733371 - AluSq SINE Alu -22 291 1 2435 269 67 19 chr3 187791207 187791327 -39733251 - L1ME3A LINE L1 -1280 4890 4777 800 266 37 107 chr3 187791600 187791794 -39732784 - L1MC4 LINE L1 -1135 6907 6701 243 103 0 0 chr3 187791794 187791833 -39732745 + (TG)n Simple_repeat Simple_repeat 2 40 0 800 266 37 107 chr3 187791833 187792096 -39732482 - L1MC4 LINE L1 -1341 6701 6482 689 299 85 44 chr3 187792862 187793273 -39731305 - MLT1J1 LTR MaLR -2 444 17 235 250 67 0 chr3 187793541 187793601 -39730977 + L1MC/D LINE L1 5595 5658 -2150 241 47 47 0 chr3 187794042 187794085 -39730493 + (TA)n Simple_repeat Simple_repeat 2 46 0 234 206 0 0 chr3 187794586 187794649 -39729929 + (TA)n Simple_repeat Simple_repeat 2 64 0 2498 61 0 3 chr3 187794832 187795144 -39729434 + AluY SINE Alu 1 311 0 21 0 0 0 chr3 187795291 187795312 -39729266 + AT_rich Low_complexity Low_complexity 1 21 0 515 16 16 0 chr3 187795412 187795476 -39729102 + (TCTA)n Simple_repeat Simple_repeat 1 65 0 5574 146 14 7 chr3 187795659 187796619 -39727959 + L1MA4 LINE L1 5335 6300 0 37 69 0 0 chr3 187797852 187797924 -39726654 + AT_rich Low_complexity Low_complexity 1 72 0 27 0 0 0 chr3 187798007 187798034 -39726544 + AT_rich Low_complexity Low_complexity 1 27 0 210 311 96 23 chr3 187798268 187798445 -39726133 + L2 LINE L2 2401 2590 -724 265 336 55 23 chr3 187798463 187798591 -39725987 + MIR SINE MIR 9 140 -122 184 338 40 0 chr3 187799308 187799382 -39725196 + L2 LINE L2 3160 3236 -77 673 202 0 0 chr3 187799705 187799824 -39724754 + FRAM SINE Alu 43 161 -15 1564 213 68 41 chr3 187799828 187800242 -39724336 - L1MD3 LINE L1 -33 7962 7538 26 0 0 0 chr3 187800967 187800993 -39723585 + AT_rich Low_complexity Low_complexity 1 26 0 36 23 0 0 chr3 187801306 187801349 -39723229 + AT_rich Low_complexity Low_complexity 1 43 0 37 23 0 0 chr3 187801720 187801764 -39722814 + AT_rich Low_complexity Low_complexity 1 44 0 2121 102 0 0 chr3 187801916 187802226 -39722352 + AluSg SINE Alu 3 312 0 1568 194 46 54 chr3 187802549 187802761 -39721817 + Charlie1b DNA MER1_type 68 280 -2481 1780 133 7 41 chr3 187802761 187803097 -39721481 - AluSx SINE Alu 0 326 1 1568 194 46 54 chr3 187803097 187803343 -39721235 + Charlie1b DNA MER1_type 280 523 0 399 311 99 35 chr3 187803354 187803698 -39720880 - MLT1L LTR MaLR -143 472 107 24 67 0 0 chr3 187803949 187803994 -39720584 + AT_rich Low_complexity Low_complexity 1 45 0 21 0 0 0 chr3 187804668 187804689 -39719889 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 187804786 187804807 -39719771 + AT_rich Low_complexity Low_complexity 1 21 0 1830 142 3 3 chr3 187806399 187806694 -39717884 + AluSx SINE Alu 5 299 -13 334 286 103 22 chr3 187807356 187807580 -39716998 + HAL1b LINE L1 259 500 -848 306 316 81 15 chr3 187807763 187807899 -39716679 + HAL1b LINE L1 696 840 -508 437 248 29 0 chr3 187808369 187808474 -39716104 + FLAM_C SINE Alu 1 108 -35 836 310 96 19 chr3 187808789 187809370 -39715208 + L1MC4a LINE L1 5255 5880 -1928 7063 191 46 31 chr3 187809454 187809863 -39714715 + L1M4c LINE L1 127 528 -5856 2207 98 3 0 chr3 187809863 187810168 -39714410 + AluSg SINE Alu 1 306 -4 7063 191 46 31 chr3 187810168 187811367 -39713211 + L1M4c LINE L1 528 1759 -4625 2230 99 7 0 chr3 187811547 187811850 -39712728 - AluSq SINE Alu -8 305 1 271 146 0 0 chr3 187811994 187812042 -39712536 - L1MC1 LINE L1 -3 6330 6283 22 35 0 0 chr3 187812066 187812095 -39712483 + AT_rich Low_complexity Low_complexity 1 29 0 24 32 0 0 chr3 187812664 187812695 -39711883 + AT_rich Low_complexity Low_complexity 1 31 0 1553 113 65 0 chr3 187812876 187813107 -39711471 - AluSc SINE Alu -15 294 49 21 36 0 0 chr3 187813177 187813205 -39711373 + AT_rich Low_complexity Low_complexity 1 28 0 289 233 0 126 chr3 187813929 187814013 -39710565 + MER3 DNA MER1_type 31 101 -61 1504 172 9 72 chr3 187814013 187814344 -39710234 + AluJo SINE Alu 1 310 -2 289 233 0 126 chr3 187814344 187814362 -39710216 + MER3 DNA MER1_type 101 120 -89 698 29 70 23 chr3 187814367 187814538 -39710040 + (TA)n Simple_repeat Simple_repeat 2 180 0 5253 136 11 31 chr3 187814553 187815375 -39709203 - L1PA13 LINE L1 -23 6140 5331 2231 110 3 0 chr3 187815375 187815676 -39708902 - AluY SINE Alu -9 302 1 5253 136 11 31 chr3 187815676 187815881 -39708697 - L1PA13 LINE L1 -832 5331 5123 4462 199 16 12 chr3 187815864 187816866 -39707712 - L1P LINE L1 -840 5306 4301 * 256 71 18 18 chr3 187816866 187816922 -39707656 + MER3 DNA MER1_type 118 126 -83 288 365 54 31 chr3 187816926 187817148 -39707430 - LTR16C LTR ERVL -9 482 256 248 359 111 8 chr3 187817464 187817698 -39706880 - L2 LINE L2 -74 3239 2982 264 324 28 19 chr3 187818706 187818814 -39705764 + L2 LINE L2 3153 3261 -11 313 331 89 23 chr3 187818979 187819236 -39705342 + L2 LINE L2 2434 2707 -607 1377 244 106 67 chr3 187819330 187820030 -39704548 - LTR8A LTR ERV1 0 727 1 382 285 155 61 chr3 187820074 187820351 -39704227 + L2 LINE L2 3008 3310 -3 257 374 41 8 chr3 187820470 187820593 -39703985 + L2 LINE L2 2947 3073 -240 1435 189 55 79 chr3 187820860 187821426 -39703152 - LTR28 LTR ERV1 0 1020 334 375 239 132 61 chr3 187821417 187821614 -39702964 - LTR28 LTR ERV1 -602 418 208 * 352 258 76 22 chr3 187821581 187821743 -39702835 - LTR28 LTR ERV1 -286 755 1 * 22 80 0 0 chr3 187822792 187822842 -39701736 + AT_rich Low_complexity Low_complexity 1 50 0 1276 273 70 14 chr3 187823360 187823789 -39700789 - LTR40a LTR ERVL 0 519 67 885 194 31 21 chr3 187824467 187824658 -39699920 + MER34 LTR ERV1 1 193 -349 654 135 4 3 chr3 187824658 187824888 -39699690 + AluSx SINE Alu 1 297 -15 468 0 0 0 chr3 187824894 187824946 -39699632 + (TA)n Simple_repeat Simple_repeat 2 53 0 285 29 0 0 chr3 187825047 187825081 -39699497 + (CA)n Simple_repeat Simple_repeat 1 34 0 648 282 18 0 chr3 187825124 187825294 -39699284 + MER34 LTR ERV1 370 542 0 1527 214 0 16 chr3 187825646 187825954 -39698624 - AluJb SINE Alu -7 305 3 365 230 237 7 chr3 187826096 187826248 -39698330 - L1MC5 LINE L1 -48 7913 7727 25 0 0 0 chr3 187826356 187826381 -39698197 + AT_rich Low_complexity Low_complexity 1 25 0 767 228 124 38 chr3 187826590 187826967 -39697611 - LTR8 LTR ERV1 -276 451 3 2109 124 13 0 chr3 187826992 187827291 -39697287 - AluSx SINE Alu -9 303 1 6523 244 57 63 chr3 187827645 187829971 -39694607 - L1 LINE L1 -1306 4840 2528 1445 183 21 0 chr3 187829972 187830256 -39694322 + L1MB1 LINE L1 5868 6157 -11 727 282 113 20 chr3 187830480 187830877 -39693701 + MER57B LTR ERV1 1 434 0 519 267 32 60 chr3 187830884 187831101 -39693477 + MER57B-int LTR ERV1 5 215 -7322 1491 250 77 44 chr3 187831141 187831932 -39692646 + MER110-int LTR ERV1 1277 1962 -2974 411 211 93 97 chr3 187831988 187832396 -39692182 + MER110-int LTR ERV1 2099 3183 -1697 373 200 25 75 chr3 187832383 187832503 -39692075 + MER110-int LTR ERV1 3838 3951 -2647 * 417 326 75 41 chr3 187832774 187833185 -39691393 + MER110-int LTR ERV1 2477 2901 -1746 1286 331 67 32 chr3 187833835 187834626 -39689952 + MER110-int LTR ERV1 6294 7112 -425 886 270 127 22 chr3 187834648 187835003 -39689575 + MER57A LTR ERV1 3 394 -9 272 160 20 0 chr3 187835361 187835411 -39689167 + L1M3 LINE L1 721 771 -5613 1911 186 62 11 chr3 187835415 187836097 -39688481 + L1M3 LINE L1 5136 5851 -565 646 12 24 0 chr3 187836970 187837053 -39687525 + (TCTA)n Simple_repeat Simple_repeat 1 85 0 1710 103 91 0 chr3 187837054 187837307 -39687271 - AluSc SINE Alu -31 278 3 352 275 215 43 chr3 187837354 187837439 -39687139 + MLT1E2 LTR MaLR 1 70 -556 1517 189 14 11 chr3 187837439 187837714 -39686864 + AluJb SINE Alu 4 279 -33 288 0 0 0 chr3 187837714 187837746 -39686832 + (CA)n Simple_repeat Simple_repeat 1 32 0 352 275 215 43 chr3 187837746 187837892 -39686686 + MLT1E2 LTR MaLR 69 273 -353 369 290 16 8 chr3 187837974 187838098 -39686480 + MLT1E2 LTR MaLR 270 394 -230 500 238 8 16 chr3 187838103 187838229 -39686349 + MER34 LTR ERV1 26 150 -392 918 89 16 0 chr3 187838229 187838352 -39686226 + AluSg/x SINE Alu 176 300 -12 1017 241 64 18 chr3 187838353 187838705 -39685873 + MER34 LTR ERV1 142 542 0 733 266 83 0 chr3 187838713 187838931 -39685647 + MLT1E2 LTR MaLR 391 626 0 420 224 53 90 chr3 187840534 187840833 -39683745 - L1M4 LINE L1 -892 5254 4967 1058 215 108 15 chr3 187842022 187842282 -39682296 + MLT1A1 LTR MaLR 14 297 -68 268 85 106 0 chr3 187842282 187842329 -39682249 + MADE1 DNA Mariner 1 52 -28 359 222 0 0 chr3 187842361 187842433 -39682145 + MLT1A1 LTR MaLR 294 365 0 205 262 0 0 chr3 187843242 187843284 -39681294 + polypyrimidine Low_complexity Low_complexity 2 43 0 207 288 45 0 chr3 187843581 187843647 -39680931 + MIR SINE MIR 130 198 -64 229 276 26 13 chr3 187843721 187843797 -39680781 + MLT1J LTR MaLR 113 189 -322 2011 126 0 23 chr3 187843818 187844128 -39680450 + AluSx SINE Alu 3 305 -7 1380 223 52 58 chr3 187844911 187845286 -39679292 + MLT1B LTR MaLR 1 374 -11 1783 156 32 111 chr3 187845286 187845747 -39678831 - MSTB LTR MaLR 0 426 2 180 0 0 0 chr3 187846136 187846156 -39678422 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1042 160 0 0 chr3 187846964 187847120 -39677458 - FRAM SINE Alu -20 156 1 276 30 0 0 chr3 187847548 187847581 -39676997 + (TG)n Simple_repeat Simple_repeat 2 34 0 23 33 0 0 chr3 187848274 187848304 -39676274 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 187848516 187848544 -39676034 + AT_rich Low_complexity Low_complexity 1 28 0 33 56 0 0 chr3 187848655 187848709 -39675869 + AT_rich Low_complexity Low_complexity 1 54 0 215 288 8 17 chr3 187848765 187848883 -39675695 + (TA)n Simple_repeat Simple_repeat 2 118 0 270 0 0 0 chr3 187848908 187848938 -39675640 + (TA)n Simple_repeat Simple_repeat 1 30 0 1049 76 0 0 chr3 187849763 187849895 -39674683 + AluY SINE Alu 1 132 -179 1140 265 93 64 chr3 187851425 187851988 -39672590 - MLT1E LTR MaLR -3 590 25 1087 222 52 0 chr3 187851988 187852218 -39672360 + MLT1B LTR MaLR 1 242 -148 1254 208 123 20 chr3 187852351 187852707 -39671871 + MER39 LTR ERV1 175 703 -4 271 292 58 36 chr3 187852793 187852930 -39671648 + MER39-int LTR ERV1 77 216 -6115 401 283 153 6 chr3 187853009 187853186 -39671392 + MER39-int LTR ERV1 366 568 -5763 1819 170 6 6 chr3 187853379 187853691 -39670887 - AluJo SINE Alu 0 312 1 702 195 47 105 chr3 187853691 187853804 -39670774 + MER39-int LTR ERV1 1426 1544 -4787 1808 171 0 0 chr3 187853804 187854103 -39670475 + AluSx SINE Alu 1 299 -13 702 195 47 105 chr3 187854103 187854246 -39670332 + MER39-int LTR ERV1 1544 1667 -4664 24 67 0 0 chr3 187854277 187854322 -39670256 + AT_rich Low_complexity Low_complexity 1 45 0 1193 252 66 76 chr3 187854403 187854967 -39669611 + MER31-int LTR ERV1 308 865 -4071 396 0 0 0 chr3 187855131 187855175 -39669403 + (CA)n Simple_repeat Simple_repeat 1 44 0 1243 191 46 79 chr3 187855263 187855809 -39668769 + MER31-int LTR ERV1 1037 2120 -2751 5435 212 77 69 chr3 187855974 187856574 -39668004 + MER31-int LTR ERV1 1721 2315 -2621 3176 98 20 7 chr3 187856574 187857021 -39667557 - MLT2A2 LTR ERVL 0 453 1 5435 212 77 69 chr3 187857021 187858654 -39665924 + MER31-int LTR ERV1 2315 3874 -1062 4539 15 0 0 chr3 187858661 187859183 -39665395 - L1PA2 LINE L1 -349 5806 5285 2883 18 0 3 chr3 187859183 187859519 -39665059 + L1PA2 LINE L1 5805 6139 -16 729 221 39 9 chr3 187859622 187859853 -39664725 + L1MDa LINE L1 2317 2554 -3986 180 125 0 0 chr3 187859985 187860017 -39664561 + (CAAAAA)n Simple_repeat Simple_repeat 3 34 0 420 139 70 124 chr3 187860027 187860156 -39664422 + MER31-int LTR ERV1 3869 3990 -946 1423 176 57 81 chr3 187910803 187911224 -39613354 + MLT1C LTR MaLR 1 411 -56 430 158 0 26 chr3 187911378 187911454 -39613124 + FRAM SINE Alu 73 146 -30 33 0 0 0 chr3 187911490 187911523 -39613055 + AT_rich Low_complexity Low_complexity 1 33 0 6198 35 3 0 chr3 187911718 187912459 -39612119 - L1PA4 LINE L1 0 6155 5413 247 176 0 0 chr3 187914004 187914055 -39610523 + L1MDa LINE L1 2880 2930 -3610 286 202 53 44 chr3 187914356 187914470 -39610108 + L1MDa LINE L1 3336 3450 -3090 333 324 144 16 chr3 187914518 187914768 -39609810 + L1MDa LINE L1 3956 4237 -2303 526 265 76 67 chr3 187915244 187915704 -39608874 + L1M4 LINE L1 4739 5202 -944 212 307 175 18 chr3 187916725 187916839 -39607739 - L2 LINE L2 0 3272 3141 208 227 23 0 chr3 187916957 187917001 -39607577 + MIR SINE MIR 4 48 -214 1593 211 36 3 chr3 187917662 187917998 -39606580 - MER7A DNA MER2_type -1 345 1 288 252 162 36 chr3 187919015 187919126 -39605452 + MLT-int LTR MaLR 1319 1443 -292 * 326 276 39 31 chr3 187919120 187919247 -39605331 - MLT-int LTR MaLR -1488 247 120 360 133 17 0 chr3 187919304 187919364 -39605214 - MLT1A1-int LTR MaLR -1264 107 47 525 205 36 18 chr3 187919420 187919532 -39605046 + FLAM_A SINE Alu 2 115 -18 1249 236 19 16 chr3 187919544 187919854 -39604724 - MLT1A1 LTR MaLR -54 311 1 359 287 0 17 chr3 187919854 187919969 -39604609 - L1M4 LINE L1 -2291 3855 3743 183 317 0 92 chr3 187920319 187920461 -39604117 - L2 LINE L2 -1872 1442 1314 576 281 46 17 chr3 187920683 187920923 -39603655 - L1ME3 LINE L1 -15 6155 5915 202 314 203 17 chr3 187921284 187921402 -39603176 + MIR SINE MIR 66 205 -57 3130 55 0 20 chr3 187922094 187922493 -39602085 + MLT2A1 LTR ERVL 1 391 -53 435 83 0 0 chr3 187922501 187922561 -39602017 + (TA)n Simple_repeat Simple_repeat 1 60 0 750 231 159 35 chr3 187922579 187922905 -39601673 - MSTD LTR MaLR 0 396 1 812 330 72 8 chr3 187923271 187923632 -39600946 + LTR16C LTR ERVL 71 454 -37 29 0 0 0 chr3 187924023 187924052 -39600526 + AT_rich Low_complexity Low_complexity 1 29 0 315 71 0 0 chr3 187924052 187924094 -39600484 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1851 156 0 0 chr3 187924096 187924378 -39600200 - AluSx SINE Alu -30 282 1 576 192 7 13 chr3 187925133 187925284 -39599294 + CT-rich Low_complexity Low_complexity 2 151 0 439 370 43 22 chr3 187927234 187927556 -39597022 + HERVL LTR ERVL 4468 4796 -858 573 112 9 19 chr3 187928212 187928319 -39596259 + (TTCC)n Simple_repeat Simple_repeat 3 108 0 2367 164 20 7 chr3 187928326 187928765 -39595813 - L1PA16 LINE L1 0 6166 5722 225 128 0 0 chr3 187928775 187928822 -39595756 + (TTTTTG)n Simple_repeat Simple_repeat 2 48 0 319 311 0 0 chr3 187928825 187928928 -39595650 + MLT2A2 LTR ERVL 83 185 -268 6543 230 31 39 chr3 187929255 187931342 -39593236 - L1M4c LINE L1 -2000 5565 3496 27 29 0 0 chr3 187931540 187931574 -39593004 + AT_rich Low_complexity Low_complexity 1 34 0 263 381 54 0 chr3 187932683 187932830 -39591748 + MLT1I LTR MaLR 125 279 -130 468 248 86 48 chr3 187933936 187934146 -39590432 + MLT1J2 LTR MaLR 3 220 -230 315 342 97 25 chr3 187934358 187934554 -39590024 - MIR SINE MIR -47 215 6 296 246 35 18 chr3 187935261 187935375 -39589203 - L1MB7 LINE L1 -1 6183 6068 21 36 0 0 chr3 187935631 187935659 -39588919 + AT_rich Low_complexity Low_complexity 1 28 0 578 307 27 4 chr3 187935724 187935949 -39588629 - L1M4c LINE L1 -4558 3009 2780 2623 101 3 3 chr3 187935982 187936344 -39588234 - L1PB1 LINE L1 0 6151 5787 354 23 0 0 chr3 187936344 187936387 -39588191 + (TG)n Simple_repeat Simple_repeat 2 44 0 2623 101 3 3 chr3 187936387 187936409 -39588169 - L1PB1 LINE L1 -363 5788 5767 5762 106 14 5 chr3 187936423 187937304 -39587274 - L1PBa LINE L1 -4657 2206 1318 3031 129 27 14 chr3 187937318 187937837 -39586741 - L1PBa LINE L1 -5704 1159 634 987 174 15 15 chr3 187937839 187938035 -39586543 - L1PBa LINE L1 -6665 198 3 2243 281 78 47 chr3 187938046 187939769 -39584809 - L1M4c LINE L1 -4788 2779 1009 1294 225 63 18 chr3 187939770 187940103 -39584475 - MLT-int LTR MaLR -78 1657 1310 2713 75 139 7 chr3 187940433 187940844 -39583734 - PABL_B LTR ERV1 -202 465 1 24 32 0 0 chr3 187941434 187941465 -39583113 + AT_rich Low_complexity Low_complexity 1 31 0 369 62 0 0 chr3 187942207 187942255 -39582323 + (CA)n Simple_repeat Simple_repeat 1 48 0 249 83 0 0 chr3 187942953 187942989 -39581589 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 481 336 20 16 chr3 187943092 187943345 -39581233 + HAL1 LINE L1 1527 1780 -727 189 74 0 0 chr3 187943690 187943717 -39580861 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 274 105 40 26 chr3 187943770 187943846 -39580732 + (CA)n Simple_repeat Simple_repeat 2 78 0 327 313 130 9 chr3 187943887 187944117 -39580461 + HAL1 LINE L1 2246 2503 -4 216 171 0 0 chr3 187944555 187944590 -39579988 + T-rich Low_complexity Low_complexity 2 36 0 312 235 78 0 chr3 187944870 187944972 -39579606 - L1MC4 LINE L1 -167 7875 7766 25 31 0 0 chr3 187944978 187945010 -39579568 + AT_rich Low_complexity Low_complexity 1 32 0 2345 87 17 0 chr3 187945033 187945332 -39579246 - AluSg SINE Alu -6 304 1 1216 177 27 0 chr3 187945332 187945552 -39579026 - L1MA4 LINE L1 -518 5782 5557 2038 158 71 3 chr3 187945553 187945945 -39578633 + L1MA4 LINE L1 5779 6197 -103 920 289 55 62 chr3 187946031 187946464 -39578114 + MLT1H LTR MaLR 118 547 -2 287 232 13 84 chr3 187946471 187946626 -39577952 - L1M4 LINE L1 -1467 4679 4536 23 0 0 0 chr3 187946745 187946768 -39577810 + AT_rich Low_complexity Low_complexity 1 23 0 2494 96 32 0 chr3 187947015 187947359 -39577219 + THE1A LTR MaLR 1 355 0 1965 95 0 0 chr3 187947616 187947880 -39576698 + AluY SINE Alu 23 286 -25 32 0 0 0 chr3 187947880 187947912 -39576666 + AT_rich Low_complexity Low_complexity 1 32 0 217 269 19 0 chr3 187948695 187948747 -39575831 + L2 LINE L2 3210 3262 -10 530 266 47 18 chr3 187949228 187949397 -39575181 - L2 LINE L2 -2 3311 3138 967 296 133 20 chr3 187949978 187950585 -39573993 - L2 LINE L2 -421 2892 2111 578 243 70 23 chr3 187951045 187951304 -39573274 + L1MEc LINE L1 890 1160 -5236 * 1466 239 125 51 chr3 187951302 187952064 -39572514 - L1M4 LINE L1 -761 5385 4568 538 263 35 12 chr3 187952074 187952245 -39572333 + L1ME1 LINE L1 5459 5633 -533 1047 227 60 57 chr3 187952253 187952686 -39571892 + L1ME1 LINE L1 5725 6164 0 28 29 0 0 chr3 187952738 187952773 -39571805 + AT_rich Low_complexity Low_complexity 1 35 0 2375 71 0 0 chr3 187953555 187953873 -39570705 + AluY SINE Alu 1 311 0 183 42 0 0 chr3 187955347 187955371 -39569207 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 293 239 44 61 chr3 187956370 187956550 -39568028 - L1ME LINE L1 -5054 1016 840 22 0 0 0 chr3 187956838 187956860 -39567718 + AT_rich Low_complexity Low_complexity 1 22 0 21 36 0 0 chr3 187956925 187956953 -39567625 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr3 187957735 187957761 -39566817 + AT_rich Low_complexity Low_complexity 1 26 0 8674 97 5 1 chr3 187958658 187959848 -39564730 - L1P LINE L1 -4940 1206 12 1096 39 0 0 chr3 187959847 187959977 -39564601 + L1P LINE L1 4120 4249 -1897 * 1490 186 12 0 chr3 187960078 187960336 -39564242 - AluJb SINE Alu -51 261 1 26 30 0 0 chr3 187960745 187960778 -39563800 + AT_rich Low_complexity Low_complexity 1 33 0 220 27 54 0 chr3 187961302 187961339 -39563239 + (TA)n Simple_repeat Simple_repeat 2 40 0 4713 155 89 40 chr3 187961526 187963453 -39561125 - HERV17 LTR ERV1 0 8399 504 1951 132 23 27 chr3 187963447 187963857 -39560721 - HERV17 LTR ERV1 -3203 3446 1275 * 1825 125 19 47 chr3 187963846 187964206 -39560372 - HERV17 LTR ERV1 -7579 1047 698 * 17778 82 12 5 chr3 187964230 187966633 -39557945 - HERV17 LTR ERV1 -3455 4944 2526 2521 220 31 71 chr3 187966799 187967691 -39556887 + MER31-int LTR ERV1 3985 6136 -195 741 272 75 15 chr3 187967966 187968231 -39556347 + MER39 LTR ERV1 361 641 -66 436 238 43 12 chr3 187968304 187968415 -39556163 + MLT1B LTR MaLR 279 498 -7 2345 77 3 3 chr3 187969543 187969854 -39554724 + AluY SINE Alu 1 311 0 645 293 63 25 chr3 187970878 187971117 -39553461 + MIR SINE MIR 14 261 -1 1807 150 3 3 chr3 187971194 187971494 -39553084 + AluSx SINE Alu 1 300 -12 198 298 57 95 chr3 187971595 187971753 -39552825 - MER5B DNA MER1_type 0 178 27 25 0 0 0 chr3 187971865 187971890 -39552688 + AT_rich Low_complexity Low_complexity 1 25 0 2376 80 0 0 chr3 187972139 187972441 -39552137 - AluY SINE Alu -9 302 1 7081 36 0 1 chr3 187972450 187973306 -39551272 - L1PA4 LINE L1 0 6155 5301 204 171 24 0 chr3 187973543 187973584 -39550994 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 4709 214 37 6 chr3 187974075 187976041 -39548537 - L1MA6 LINE L1 0 6300 4270 307 204 0 0 chr3 187976043 187976097 -39548481 + MSTD LTR MaLR 2 55 -341 717 237 45 0 chr3 187976203 187976359 -39548219 + MSTD LTR MaLR 234 396 0 3627 218 64 16 chr3 187976361 187977359 -39547219 - L1MA6 LINE L1 -1875 4271 3226 24 32 0 0 chr3 187978648 187978679 -39545899 + AT_rich Low_complexity Low_complexity 1 31 0 779 350 104 13 chr3 187979278 187979652 -39544926 - L2 LINE L2 -4 3309 2902 230 275 11 33 chr3 187979954 187980045 -39544533 - L1MC4 LINE L1 -1339 6703 6615 264 111 56 0 chr3 187980057 187980111 -39544467 - LTR66 LTR ERVL -160 450 394 2485 226 85 5 chr3 187981119 187981722 -39542856 + MER82 DNA MER2_type 1 651 -2 199 279 66 0 chr3 187981935 187981996 -39542582 + L2 LINE L2 3236 3300 -13 504 293 95 25 chr3 187983524 187983940 -39540638 - MLT1G3 LTR MaLR -27 568 34 261 183 0 50 chr3 187983947 187984007 -39540571 - MLT1G3 LTR MaLR -536 59 3 28 29 0 0 chr3 187984329 187984364 -39540214 + AT_rich Low_complexity Low_complexity 1 35 0 750 260 181 19 chr3 187986916 187987331 -39537247 - L1MC4 LINE L1 -1 8041 7560 35 78 0 0 chr3 187987331 187987408 -39537170 + AT_rich Low_complexity Low_complexity 1 77 0 225 0 0 0 chr3 187987522 187987547 -39537031 + (TCTCCC)n Simple_repeat Simple_repeat 2 26 0 9825 68 18 45 chr3 187987581 187989002 -39535576 + SVA Other Other 1 1383 -3 623 146 80 20 chr3 187989003 187989154 -39535424 - Charlie7 DNA MER1_type -179 2433 2274 414 224 0 71 chr3 187989374 187989472 -39535106 - FRAM SINE Alu -10 156 66 7121 37 1 0 chr3 187989473 187990344 -39534234 - L1P LINE L1 -988 5158 4287 256 306 149 0 chr3 187991353 187991474 -39533104 + MIR SINE MIR 11 149 -113 2358 90 0 0 chr3 187991638 187991948 -39532630 + AluSx SINE Alu 1 310 -2 1242 252 92 31 chr3 187992728 187993204 -39531374 - MLT1D LTR MaLR 0 505 1 2252 66 7 10 chr3 187993755 187994058 -39530520 - AluY SINE Alu -7 304 3 407 331 99 57 chr3 187995127 187995434 -39529144 - L2 LINE L2 -72 3241 2948 1865 108 25 11 chr3 187995434 187995751 -39528827 + AluSc SINE Alu 1 321 0 407 331 99 57 chr3 187995751 187996063 -39528515 - L2 LINE L2 -365 2948 2581 288 300 92 31 chr3 187996236 187996366 -39528212 - MIR SINE MIR -74 188 51 180 0 0 0 chr3 187996430 187996450 -39528128 + (CAAA)n Simple_repeat Simple_repeat 2 21 0 27 87 0 0 chr3 187997808 187997877 -39526701 + AT_rich Low_complexity Low_complexity 1 69 0 1308 155 13 13 chr3 187998031 187998270 -39526308 - L1PB2 LINE L1 -3 6148 5910 207 69 0 0 chr3 187999647 187999676 -39524902 + (TTTTTG)n Simple_repeat Simple_repeat 2 30 0 46 0 0 0 chr3 188000875 188000921 -39523657 + AT_rich Low_complexity Low_complexity 1 46 0 21 57 0 0 chr3 188001095 188001130 -39523448 + AT_rich Low_complexity Low_complexity 1 35 0 272 291 107 0 chr3 188001136 188001239 -39523339 - L2 LINE L2 0 3313 3200 26 50 0 0 chr3 188002166 188002206 -39522372 + AT_rich Low_complexity Low_complexity 1 40 0 582 380 47 31 chr3 188002443 188003151 -39521427 - L2 LINE L2 -2 3311 2597 42545 36 21 1 chr3 188003374 188009407 -39515171 + L1PA3 LINE L1 1 6155 0 24 53 0 0 chr3 188009462 188009500 -39515078 + AT_rich Low_complexity Low_complexity 1 38 0 197 358 63 0 chr3 188010911 188011006 -39513572 + MIR SINE MIR 49 149 -113 21 36 0 0 chr3 188011089 188011117 -39513461 + AT_rich Low_complexity Low_complexity 1 28 0 4803 215 53 13 chr3 188011640 188012264 -39512314 + L1MA4 LINE L1 4217 4815 -1485 1823 141 37 55 chr3 188012264 188012579 -39511999 + THE1C LTR MaLR 1 309 -66 2052 125 34 0 chr3 188012579 188012876 -39511702 + AluSx SINE Alu 2 308 -4 1823 141 37 55 chr3 188012876 188012942 -39511636 + THE1C LTR MaLR 309 375 0 4803 215 53 13 chr3 188012942 188013385 -39511193 + L1MA4 LINE L1 4815 5239 -1061 180 0 0 0 chr3 188013385 188013405 -39511173 + (CAT)n Simple_repeat Simple_repeat 3 22 0 4803 215 53 13 chr3 188013405 188014349 -39510229 + L1MA4 LINE L1 5239 6300 0 1615 203 118 20 chr3 188015009 188015417 -39509161 - MLT1C LTR MaLR -17 450 3 399 269 143 21 chr3 188016288 188016526 -39508052 - L1ME LINE L1 -420 5742 5476 230 167 148 0 chr3 188016536 188016590 -39507988 - L1P5 LINE L1 -369 5782 5721 1643 276 55 24 chr3 188016617 188017600 -39506978 - L1ME LINE L1 -541 5625 4611 27 0 0 0 chr3 188017898 188017925 -39506653 + AT_rich Low_complexity Low_complexity 1 27 0 249 57 0 0 chr3 188018592 188018627 -39505951 + (TAAAAA)n Simple_repeat Simple_repeat 2 36 0 823 188 18 6 chr3 188019460 188019625 -39504953 - MER5A DNA MER1_type -18 171 5 22 0 0 0 chr3 188020664 188020686 -39503892 + AT_rich Low_complexity Low_complexity 1 22 0 306 125 0 0 chr3 188020853 188020901 -39503677 + (CACTA)n Simple_repeat Simple_repeat 3 50 0 359 326 31 27 chr3 188021172 188021477 -39503101 - MLT1G1 LTR MaLR -241 354 5 986 249 26 0 chr3 188021584 188021817 -39502761 - MER8 DNA MER2_type 0 239 1 30 0 0 0 chr3 188022329 188022359 -39502219 + AT_rich Low_complexity Low_complexity 1 30 0 440 292 71 38 chr3 188022940 188023180 -39501398 - MER46C DNA MER2_type -89 249 2 206 356 0 0 chr3 188023206 188023293 -39501285 + MIR3 SINE MIR 120 206 -2 222 174 0 0 chr3 188025344 188025390 -39499188 + GA-rich Low_complexity Low_complexity 3 48 0 306 0 0 0 chr3 188025484 188025518 -39499060 + (TG)n Simple_repeat Simple_repeat 1 34 0 436 282 54 78 chr3 188025520 188025906 -39498672 - HAL1 LINE L1 -4 2503 2127 257 225 35 136 chr3 188026008 188026177 -39498401 - HAL1 LINE L1 -383 2124 1973 2037 188 24 31 chr3 188026266 188026687 -39497891 + MSTB LTR MaLR 9 426 0 1298 299 45 34 chr3 188026691 188027332 -39497246 - HAL1 LINE L1 -689 1818 1171 434 286 21 29 chr3 188027609 188027749 -39496829 - HAL1 LINE L1 -1875 632 494 335 261 70 70 chr3 188027815 188027972 -39496606 - HAL1 LINE L1 -2237 270 114 296 211 13 0 chr3 188027982 188028058 -39496520 + (CA)n Simple_repeat Simple_repeat 2 78 0 2486 161 16 9 chr3 188028061 188028484 -39496094 - MSTB LTR MaLR 0 426 1 4489 191 43 16 chr3 188028489 188029424 -39495154 - MSTB-int LTR MaLR -5 1646 687 1378 158 0 0 chr3 188029418 188029640 -39494938 - MSTB-int LTR MaLR -1429 222 1 * 2089 193 16 57 chr3 188029640 188030081 -39494497 - MSTB LTR MaLR 0 426 4 393 39 0 0 chr3 188030081 188030132 -39494446 + (CA)n Simple_repeat Simple_repeat 2 52 0 575 135 42 0 chr3 188030294 188030390 -39494188 - MST-int LTR MaLR -1351 300 201 988 239 64 72 chr3 188030537 188031009 -39493569 + LTR45B LTR ERV1 22 489 0 339 273 100 7 chr3 188031502 188031652 -39492926 - MER104 DNA Tc2 -13 167 4 32 26 0 0 chr3 188031918 188031957 -39492621 + AT_rich Low_complexity Low_complexity 1 39 0 21 57 0 0 chr3 188032558 188032593 -39491985 + AT_rich Low_complexity Low_complexity 1 35 0 1140 197 7 83 chr3 188032889 188033189 -39491389 - AluJb SINE Alu -18 294 18 1140 282 84 28 chr3 188033705 188034539 -39490039 + L1ME LINE L1 302 1045 -4933 2678 214 22 8 chr3 188034552 188035141 -39489437 + L1MC3 LINE L1 7079 7675 -110 264 185 0 0 chr3 188035141 188035195 -39489383 + MLT1D LTR MaLR 452 505 0 893 256 80 5 chr3 188035195 188035458 -39489120 - L1MC/D LINE L1 -620 5546 5241 576 0 0 0 chr3 188035458 188035522 -39489056 + (TA)n Simple_repeat Simple_repeat 1 64 0 893 256 80 5 chr3 188035522 188035690 -39488888 - L1MC/D LINE L1 -925 5241 5087 742 243 88 14 chr3 188035879 188036143 -39488435 - L1ME LINE L1 -619 5547 5241 576 0 0 0 chr3 188036143 188036207 -39488371 + (TA)n Simple_repeat Simple_repeat 1 64 0 742 243 88 14 chr3 188036207 188036375 -39488203 - L1ME LINE L1 -925 5241 5087 22 0 0 0 chr3 188036528 188036550 -39488028 + AT_rich Low_complexity Low_complexity 1 22 0 201 39 0 0 chr3 188037946 188037972 -39486606 + (TG)n Simple_repeat Simple_repeat 2 27 0 21 57 0 0 chr3 188039387 188039422 -39485156 + AT_rich Low_complexity Low_complexity 1 35 0 259 264 146 36 chr3 188039926 188040036 -39484542 + L2 LINE L2 3192 3313 0 4065 81 16 2 chr3 188040211 188040766 -39483812 - L1PA7 LINE L1 -1 6153 5591 26 0 0 0 chr3 188041189 188041215 -39483363 + AT_rich Low_complexity Low_complexity 1 26 0 474 307 58 5 chr3 188043452 188043641 -39480937 - LTR16A LTR ERVL -56 394 196 427 292 93 81 chr3 188043678 188044096 -39480482 + L2 LINE L2 2889 3311 -2 376 296 204 0 chr3 188044238 188044390 -39480188 - MER5A DNA MER1_type 0 189 7 46 62 0 0 chr3 188044748 188044829 -39479749 + AT_rich Low_complexity Low_complexity 1 81 0 227 237 290 0 chr3 188044992 188045085 -39479493 - L1ME1 LINE L1 -24 6142 6023 257 386 63 0 chr3 188046390 188046548 -39478030 - L2 LINE L2 -444 2870 2703 314 18 73 0 chr3 188046894 188046949 -39477629 + (TA)n Simple_repeat Simple_repeat 1 59 0 351 276 29 19 chr3 188047202 188047307 -39477271 + L2 LINE L2 3186 3291 -22 239 364 179 5 chr3 188048600 188048795 -39475783 + L2 LINE L2 2437 2665 -649 239 278 0 14 chr3 188049680 188049752 -39474826 + (CA)n Simple_repeat Simple_repeat 2 72 0 492 313 60 6 chr3 188051195 188051361 -39473217 + MIR SINE MIR 15 189 -73 1820 155 16 9 chr3 188051503 188051826 -39472752 + L1MA6 LINE L1 5976 6300 0 36 53 0 0 chr3 188051974 188052031 -39472547 + AT_rich Low_complexity Low_complexity 1 57 0 1840 208 42 69 chr3 188052277 188052831 -39471747 - L1MA10 LINE L1 -7 6327 5789 2021 234 85 11 chr3 188052874 188053263 -39471315 - L1MA10 LINE L1 -1230 4916 4557 2061 210 34 2 chr3 188053263 188053710 -39470868 + LOR1b LTR ERV1 1 461 0 2021 234 85 11 chr3 188053710 188053852 -39470726 - L1MA10 LINE L1 -1589 4557 4427 4927 45 5 0 chr3 188053852 188054457 -39470121 - L1PA4 LINE L1 -2 6153 5546 2021 234 85 11 chr3 188054457 188054534 -39470044 - L1MA10 LINE L1 -1719 4427 4262 22 0 0 0 chr3 188055401 188055423 -39469155 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 188056176 188056198 -39468380 + AT_rich Low_complexity Low_complexity 1 22 0 1212 163 9 56 chr3 188057451 188057684 -39466894 - MLT1D LTR MaLR -2 503 282 225 241 19 0 chr3 188058084 188058138 -39466440 + (TA)n Simple_repeat Simple_repeat 2 56 0 1030 63 42 0 chr3 188058438 188058581 -39465997 + L1MA1 LINE L1 6154 6302 0 25 0 0 0 chr3 188058581 188058606 -39465972 + AT_rich Low_complexity Low_complexity 1 25 0 36 70 0 0 chr3 188058861 188058932 -39465646 + AT_rich Low_complexity Low_complexity 1 71 0 1173 294 143 34 chr3 188059188 188059929 -39464649 - L2 LINE L2 -1331 1983 1162 1721 139 4 15 chr3 188060324 188060591 -39463987 - AluSx SINE Alu -40 272 9 22 80 0 0 chr3 188061297 188061347 -39463231 + AT_rich Low_complexity Low_complexity 1 50 0 297 67 0 0 chr3 188061347 188061392 -39463186 - MSTA LTR MaLR -19 409 365 348 93 0 19 chr3 188061421 188061475 -39463103 + THE1C LTR MaLR 1 53 -322 1738 118 112 58 chr3 188061480 188061827 -39462751 - MLT2A2 LTR ERVL -8 445 80 1408 160 0 9 chr3 188061827 188062058 -39462520 - HERVL LTR ERVL -4920 734 506 2034 131 48 31 chr3 188062058 188062416 -39462162 + THE1B LTR MaLR 1 364 0 11132 103 4 4 chr3 188062416 188063995 -39460583 + THE1B-int LTR MaLR 1 1580 0 1913 138 50 44 chr3 188063995 188064357 -39460221 + THE1B LTR MaLR 1 364 0 976 98 0 0 chr3 188064357 188064489 -39460089 - MLT2A2 LTR ERVL -321 132 1 1453 172 34 34 chr3 188064490 188064816 -39459762 + THE1C LTR MaLR 50 375 0 * 1510 180 121 19 chr3 188064816 188065138 -39459440 - MSTA LTR MaLR -73 355 1 23 33 0 0 chr3 188066065 188066095 -39458483 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 188066106 188066127 -39458451 + AT_rich Low_complexity Low_complexity 1 21 0 210 71 0 0 chr3 188066714 188066742 -39457836 + (TTCA)n Simple_repeat Simple_repeat 1 28 0 1181 135 0 0 chr3 188067749 188067912 -39456666 + AluSx SINE Alu 4 166 -146 929 228 62 0 chr3 188068060 188068284 -39456294 - LTR65 LTR ERV1 -6 663 426 747 168 0 0 chr3 188068292 188068423 -39456155 + AluSx SINE Alu 172 302 -10 229 209 0 0 chr3 188068476 188068519 -39456059 + (TATG)n Simple_repeat Simple_repeat 2 44 0 28 29 0 0 chr3 188068547 188068582 -39455996 + AT_rich Low_complexity Low_complexity 1 35 0 240 267 33 0 chr3 188069035 188069125 -39455453 + (TA)n Simple_repeat Simple_repeat 1 93 0 * 275 269 0 0 chr3 188069059 188069126 -39455452 + (TATG)n Simple_repeat Simple_repeat 1 67 0 2460 241 35 20 chr3 188069161 188069813 -39454765 + LTR65 LTR ERV1 1 662 -7 337 265 188 38 chr3 188069942 188070395 -39454183 + L1M4 LINE L1 3826 4346 -1800 2272 90 0 3 chr3 188070446 188070746 -39453832 - AluSq SINE Alu -14 299 1 467 320 57 15 chr3 188070835 188071169 -39453409 + L1M4 LINE L1 4604 4951 -1195 180 0 0 0 chr3 188072283 188072303 -39452275 + (CAAAAA)n Simple_repeat Simple_repeat 4 23 0 422 109 0 0 chr3 188072641 188072705 -39451873 + MER2 DNA MER2_type 126 189 -156 231 320 93 0 chr3 188072753 188072828 -39451750 + MER2 DNA MER2_type 264 345 0 280 241 0 0 chr3 188073245 188073303 -39451275 - LTR67 LTR ERVL -8 549 492 1665 211 50 0 chr3 188073406 188073743 -39450835 - MSTD LTR MaLR -41 355 2 409 206 11 43 chr3 188074423 188074515 -39450063 + FLAM_A SINE Alu 22 110 -23 306 0 0 0 chr3 188074522 188074556 -39450022 + (CAAAA)n Simple_repeat Simple_repeat 2 35 0 24 0 0 0 chr3 188075030 188075054 -39449524 + AT_rich Low_complexity Low_complexity 1 24 0 364 299 71 24 chr3 188075115 188075242 -39449336 + Zaphod DNA AcHobo 13 145 -3886 444 274 118 21 chr3 188075296 188075482 -39449096 + Zaphod DNA AcHobo 239 442 -3589 256 214 71 43 chr3 188075646 188075716 -39448862 - MER2 DNA MER2_type 0 345 274 798 229 141 29 chr3 188075731 188076220 -39448358 + Zaphod DNA AcHobo 443 986 -3045 296 254 0 0 chr3 188076319 188076390 -39448188 + MER67C LTR ERV1 1 71 -443 1151 237 62 46 chr3 188076442 188076914 -39447664 + MER67C LTR ERV1 67 514 0 322 219 135 31 chr3 188076914 188077103 -39447475 + Zaphod DNA AcHobo 3777 3985 -46 288 222 25 0 chr3 188077205 188077286 -39447292 - L1MC4 LINE L1 -1346 6696 6614 276 221 47 0 chr3 188077212 188077298 -39447280 + L1MC4 LINE L1 6614 6703 -1339 * 269 209 47 0 chr3 188077292 188077378 -39447200 - L1MC4 LINE L1 -1339 6703 6614 * 245 271 0 0 chr3 188077391 188077450 -39447128 + (CATATA)n Simple_repeat Simple_repeat 5 63 0 316 291 0 12 chr3 188077547 188077633 -39446945 + L1MC4 LINE L1 6614 6698 -1344 588 186 26 9 chr3 188078220 188078333 -39446245 + FLAM_C SINE Alu 3 117 -16 258 307 63 39 chr3 188079505 188079632 -39444946 + MIR SINE MIR 87 216 -46 23 78 0 0 chr3 188080887 188080938 -39443640 + AT_rich Low_complexity Low_complexity 1 51 0 288 305 110 17 chr3 188081276 188081394 -39443184 - L2 LINE L2 -31 3282 3154 633 195 0 0 chr3 188081615 188081770 -39442808 + FLAM_A SINE Alu 8 162 0 1086 154 8 45 chr3 188083067 188083314 -39441264 - L1MA10 LINE L1 -11 6323 6086 1923 216 37 18 chr3 188083316 188083751 -39440827 + L1MB1 LINE L1 5453 5895 -294 242 294 68 73 chr3 188083792 188083969 -39440609 - MLT1J LTR MaLR -107 404 229 30 27 0 0 chr3 188084261 188084298 -39440280 + AT_rich Low_complexity Low_complexity 1 37 0 238 232 20 10 chr3 188084382 188084481 -39440097 + (TA)n Simple_repeat Simple_repeat 2 101 0 467 286 10 108 chr3 188085142 188085272 -39439306 - MER5A DNA MER1_type -3 186 81 2294 78 10 0 chr3 188085272 188085579 -39438999 - AluY SINE Alu -1 310 1 467 286 10 108 chr3 188085579 188085651 -39438927 - MER5A DNA MER1_type -108 81 4 594 285 146 21 chr3 188088586 188088874 -39435704 - L2 LINE L2 0 3313 2990 296 356 142 22 chr3 188088881 188089564 -39435014 + L2 LINE L2 2305 3070 -202 200 212 30 15 chr3 188089710 188089776 -39434802 + (TTAA)n Simple_repeat Simple_repeat 4 70 0 392 360 118 19 chr3 188089779 188090210 -39434368 + L2 LINE L2 2840 3313 0 396 0 0 0 chr3 188090619 188090663 -39433915 + (TA)n Simple_repeat Simple_repeat 2 45 0 1883 203 175 143 chr3 188091652 188091976 -39432602 - L1MD3 LINE L1 -8 7987 7675 930 35 0 0 chr3 188091976 188092089 -39432489 - L1PA3 LINE L1 -1 6154 6042 1883 203 175 143 chr3 188092089 188092374 -39432204 - L1MD3 LINE L1 -320 7675 7400 523 288 0 0 chr3 188092374 188092499 -39432079 - MLT1F1 LTR MaLR -442 125 1 1883 203 175 143 chr3 188092499 188093011 -39431567 - L1MD3 LINE L1 -595 7400 6702 328 229 37 46 chr3 188093015 188093040 -39431538 - L1MC/D LINE L1 -654 5508 5484 360 0 0 0 chr3 188093040 188093080 -39431498 + (CA)n Simple_repeat Simple_repeat 2 41 0 328 229 37 46 chr3 188093080 188093163 -39431415 - L1MC/D LINE L1 -678 5484 5401 21 57 0 0 chr3 188093351 188093386 -39431192 + AT_rich Low_complexity Low_complexity 1 35 0 38 39 0 0 chr3 188093515 188093567 -39431011 + AT_rich Low_complexity Low_complexity 1 52 0 541 243 55 112 chr3 188094082 188094448 -39430130 - LTR37A LTR ERV1 -4 422 78 320 156 11 156 chr3 188094597 188094687 -39429891 + LTR8A LTR ERV1 651 727 0 185 0 0 39 chr3 188095131 188095157 -39429421 + (TTTTTA)n Simple_repeat Simple_repeat 5 29 0 2079 123 0 3 chr3 188095159 188095459 -39429119 - AluSc SINE Alu -5 304 6 24 53 0 0 chr3 188095503 188095541 -39429037 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr3 188095725 188095748 -39428830 + AT_rich Low_complexity Low_complexity 1 23 0 864 279 87 71 chr3 188096153 188096718 -39427860 + L1MCa LINE L1 111 573 -5472 1710 246 187 39 chr3 188096779 188098265 -39426313 + L1MCa LINE L1 556 2261 -4303 2540 204 19 5 chr3 188098265 188098309 -39426269 - MLT2B1 LTR ERVL 0 461 419 423 0 0 0 chr3 188098309 188098356 -39426222 + (TCTA)n Simple_repeat Simple_repeat 4 50 0 186 43 0 0 chr3 188098360 188098383 -39426195 + (GA)n Simple_repeat Simple_repeat 2 24 0 2540 204 19 5 chr3 188098383 188098838 -39425740 - MLT2B1 LTR ERVL -44 417 1 527 235 124 33 chr3 188098844 188099021 -39425557 + L1MCa LINE L1 2266 2425 -4139 7427 101 2 3 chr3 188099021 188100865 -39423713 - L1PA7 LINE L1 -6 6148 4306 527 235 124 33 chr3 188100865 188101179 -39423399 + L1MCa LINE L1 2425 3759 -2805 918 233 7 7 chr3 188101187 188101457 -39423121 + L1M4 LINE L1 2703 2972 -3174 22 0 0 0 chr3 188101739 188101761 -39422817 + AT_rich Low_complexity Low_complexity 1 22 0 2109 91 14 0 chr3 188102378 188102665 -39421913 - AluSp SINE Alu -22 291 1 2017 118 0 51 chr3 188153005 188153319 -39371259 + AluSg SINE Alu 1 298 -12 1470 236 83 39 chr3 188153827 188154234 -39370344 - MLT1D LTR MaLR -80 425 1 3667 139 11 63 chr3 188154789 188155514 -39369064 - L1PA15 LINE L1 -15 6150 5464 193 373 118 31 chr3 188156065 188156226 -39368352 + L2 LINE L2 3094 3268 -4 25 0 0 0 chr3 188156759 188156784 -39367794 + AT_rich Low_complexity Low_complexity 1 25 0 236 434 42 6 chr3 188156903 188157069 -39367509 + L2 LINE L2 3101 3272 0 35 71 0 0 chr3 188157271 188157341 -39367237 + AT_rich Low_complexity Low_complexity 1 70 0 646 131 180 0 chr3 188157632 188157754 -39366824 + L1MA6 LINE L1 6027 6170 -130 3326 140 51 9 chr3 188157854 188158418 -39366160 - MER39B LTR ERV1 -65 588 1 22 0 0 0 chr3 188159710 188159732 -39364846 + AT_rich Low_complexity Low_complexity 1 22 0 518 170 26 59 chr3 188159925 188160078 -39364500 - L1MA7 LINE L1 -5 6286 6139 29 84 0 0 chr3 188160163 188160234 -39364344 + AT_rich Low_complexity Low_complexity 1 71 0 390 192 0 0 chr3 188160314 188160392 -39364186 - L1MA8 LINE L1 -153 6138 6061 696 352 59 47 chr3 188160694 188161753 -39362825 + L2 LINE L2 2235 3300 -13 278 263 192 45 chr3 188161757 188161913 -39362665 - MIR SINE MIR -65 197 19 986 259 87 39 chr3 188162611 188163093 -39361485 + MLT1D LTR MaLR 1 505 0 245 242 182 0 chr3 188163486 188163585 -39360993 + MIR SINE MIR 75 191 -71 209 365 17 35 chr3 188163688 188163803 -39360775 + MIR SINE MIR 36 148 -114 1649 170 0 69 chr3 188163891 188164226 -39360352 + AluJo SINE Alu 1 312 0 25 83 0 0 chr3 188164240 188164300 -39360278 + AT_rich Low_complexity Low_complexity 1 60 0 38 22 0 0 chr3 188166679 188166724 -39357854 + AT_rich Low_complexity Low_complexity 1 45 0 250 341 0 0 chr3 188166950 188167035 -39357543 - MIR SINE MIR -78 184 100 429 278 23 8 chr3 188167083 188167216 -39357362 + MIR SINE MIR 72 206 -56 1537 196 11 3 chr3 188167700 188167985 -39356593 + AluJo SINE Alu 1 287 -25 190 416 22 17 chr3 188168468 188168646 -39355932 - L2 LINE L2 -1017 2297 2119 488 240 70 12 chr3 188169245 188169416 -39355162 - L1ME3A LINE L1 -111 6059 5879 998 299 20 0 chr3 188169416 188169760 -39354818 - L1ME1 LINE L1 -26 6140 5790 351 0 0 0 chr3 188169794 188169833 -39354745 + (TTA)n Simple_repeat Simple_repeat 3 41 0 2446 77 0 0 chr3 188169833 188170158 -39354420 - L1PA7 LINE L1 -18 6136 5812 3875 81 23 0 chr3 188170158 188170803 -39353775 + L1PA7 LINE L1 5133 5787 -385 732 259 22 22 chr3 188170808 188171040 -39353538 - L1ME1 LINE L1 -395 5771 5540 234 0 0 0 chr3 188171052 188171078 -39353500 + (T)n Simple_repeat Simple_repeat 1 26 0 957 96 0 0 chr3 188171086 188171211 -39353367 - AluSq SINE Alu -83 230 106 5523 165 52 7 chr3 188171237 188172510 -39352068 - L1MA3 LINE L1 0 6305 4974 2178 122 3 26 chr3 188172510 188172862 -39351716 + L1PA13 LINE L1 5820 6163 0 503 276 39 53 chr3 188172862 188173221 -39351357 + L1M4 LINE L1 2925 3278 -2868 1475 230 127 73 chr3 188173221 188173909 -39350669 - MER50 LTR ERV1 0 734 10 613 265 12 68 chr3 188173915 188174116 -39350462 + L1M4 LINE L1 3275 3453 -2693 2505 112 8 8 chr3 188174116 188174490 -39350088 - THE1C LTR MaLR -1 374 1 613 265 12 68 chr3 188174490 188174612 -39349966 + L1M4 LINE L1 3453 3580 -2566 1801 216 49 0 chr3 188174615 188175003 -39349575 + MSTC LTR MaLR 1 407 -21 1891 237 28 27 chr3 188175003 188175969 -39348609 + L1M4 LINE L1 3790 4862 -1284 5237 185 16 22 chr3 188175971 188177992 -39346586 - L1MA6 LINE L1 0 6300 4293 801 246 53 22 chr3 188177994 188178222 -39346356 + MLT1A1 LTR MaLR 131 365 0 35 41 0 0 chr3 188178367 188178416 -39346162 + AT_rich Low_complexity Low_complexity 1 49 0 186 311 40 27 chr3 188178958 188179032 -39345546 - MIR3 SINE MIR -48 160 86 21 0 0 0 chr3 188180449 188180470 -39344108 + AT_rich Low_complexity Low_complexity 1 21 0 280 345 73 34 chr3 188181011 188181188 -39343390 - MIR3 SINE MIR -4 204 21 237 111 0 0 chr3 188181837 188181873 -39342705 - AluJo SINE Alu -14 288 253 1317 210 28 0 chr3 188181932 188182184 -39342394 - AluJo SINE Alu -53 259 1 1615 191 7 17 chr3 188182820 188183118 -39341460 - AluJo SINE Alu -9 303 9 349 305 141 42 chr3 188183179 188183392 -39341186 - MIR SINE MIR -10 252 19 21 36 0 0 chr3 188184191 188184219 -39340359 + AT_rich Low_complexity Low_complexity 1 28 0 216 266 13 76 chr3 188185056 188185135 -39339443 - MER5A DNA MER1_type -79 110 37 2886 185 93 9 chr3 188185409 188185992 -39338586 + MER39 LTR ERV1 76 707 0 205 391 54 0 chr3 188186046 188186138 -39338440 - L2 LINE L2 -17 3255 3159 2067 98 11 3 chr3 188186662 188186949 -39337629 + AluSc SINE Alu 1 289 -20 853 57 0 0 chr3 188188217 188188356 -39336222 + L1PA3 LINE L1 6041 6179 0 1382 117 34 0 chr3 188188364 188188570 -39336008 + AluSg/x SINE Alu 66 278 -32 817 36 9 9 chr3 188188571 188188681 -39335897 + (GAAA)n Simple_repeat Simple_repeat 2 111 0 443 87 14 0 chr3 188188681 188188750 -39335828 + (GAGAA)n Simple_repeat Simple_repeat 1 70 0 2620 157 50 4 chr3 188188965 188189482 -39335096 + L1MC1 LINE L1 5793 6333 0 1315 302 84 19 chr3 188189702 188189801 -39334777 + LTR40a LTR ERVL 1 92 -427 2734 35 0 9 chr3 188189801 188190143 -39334435 + L1PA4 LINE L1 5815 6153 -2 1315 302 84 19 chr3 188190143 188190530 -39334048 + LTR40a LTR ERVL 92 519 0 21 0 0 0 chr3 188191726 188191747 -39332831 + AT_rich Low_complexity Low_complexity 1 21 0 199 305 24 37 chr3 188193133 188193215 -39331363 + MIR SINE MIR 156 236 -26 294 369 96 7 chr3 188194784 188195085 -39329493 + L2 LINE L2 2898 3225 -88 23 68 0 0 chr3 188196007 188196051 -39328527 + AT_rich Low_complexity Low_complexity 1 44 0 28 71 0 0 chr3 188197111 188197167 -39327411 + AT_rich Low_complexity Low_complexity 1 56 0 29 28 0 0 chr3 188197221 188197257 -39327321 + AT_rich Low_complexity Low_complexity 1 36 0 412 268 10 0 chr3 188199851 188199948 -39324630 + MER5B DNA MER1_type 1 98 -80 1111 150 84 0 chr3 188199960 188200187 -39324391 + L1MA2 LINE L1 3360 3605 -3960 * 5920 142 21 20 chr3 188200171 188201021 -39323557 + L1MA2 LINE L1 6602 7453 -270 1459 156 49 87 chr3 188201021 188201411 -39323167 + THE1C LTR MaLR 1 375 0 5920 142 21 20 chr3 188201411 188201683 -39322895 + L1MA2 LINE L1 7453 7723 0 533 192 66 82 chr3 188201752 188201934 -39322644 - MER3 DNA MER1_type 0 209 31 777 250 0 0 chr3 188201937 188202097 -39322481 - FRAM SINE Alu -6 160 1 221 362 0 0 chr3 188202149 188202218 -39322360 + MER5A DNA MER1_type 4 72 -117 2002 133 3 10 chr3 188202285 188202594 -39321984 - AluSx SINE Alu -3 309 3 279 211 18 0 chr3 188202688 188202745 -39321833 - L2 LINE L2 -4 3309 3252 21 0 0 0 chr3 188203157 188203178 -39321400 + AT_rich Low_complexity Low_complexity 1 21 0 261 186 35 12 chr3 188203968 188204054 -39320524 + (TA)n Simple_repeat Simple_repeat 1 88 0 23 0 0 0 chr3 188205027 188205050 -39319528 + AT_rich Low_complexity Low_complexity 1 23 0 2276 97 0 3 chr3 188206348 188206647 -39317931 - AluSq SINE Alu -15 298 1 1876 244 30 121 chr3 188207253 188208280 -39316298 - L1M4 LINE L1 -2941 3205 2272 1474 234 0 0 chr3 188208280 188208600 -39315978 + L1MB1 LINE L1 5846 6165 -3 2259 90 0 7 chr3 188208616 188208916 -39315662 - AluY SINE Alu -13 298 1 26 64 0 0 chr3 188209527 188209574 -39315004 + AT_rich Low_complexity Low_complexity 1 47 0 21 0 0 0 chr3 188209861 188209882 -39314696 + AT_rich Low_complexity Low_complexity 1 21 0 1075 192 0 0 chr3 188210158 188210340 -39314238 - AluJo SINE Alu -130 182 1 623 281 31 0 chr3 188210345 188210541 -39314037 - L1MD3 LINE L1 -76 7919 7718 2273 68 0 3 chr3 188210551 188210862 -39313716 - AluY SINE Alu 0 311 1 21 36 0 0 chr3 188210958 188210986 -39313592 + AT_rich Low_complexity Low_complexity 1 28 0 26 0 0 0 chr3 188214032 188214058 -39310520 + AT_rich Low_complexity Low_complexity 1 26 0 212 267 13 0 chr3 188214578 188214653 -39309925 + (TA)n Simple_repeat Simple_repeat 1 76 0 1502 195 16 22 chr3 188214793 188215162 -39309416 - L1 LINE L1 -1424 4722 4356 22 35 0 0 chr3 188215553 188215582 -39308996 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 188216605 188216626 -39307952 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 188216973 188217002 -39307576 + AT_rich Low_complexity Low_complexity 1 29 0 26 101 0 0 chr3 188217642 188217731 -39306847 + AT_rich Low_complexity Low_complexity 1 89 0 318 274 119 32 chr3 188218612 188218889 -39305689 - L1ME LINE L1 -293 5828 5528 24 0 0 0 chr3 188219412 188219436 -39305142 + AT_rich Low_complexity Low_complexity 1 24 0 324 0 0 0 chr3 188219506 188219542 -39305036 + (CA)n Simple_repeat Simple_repeat 1 36 0 249 33 0 0 chr3 188219564 188219594 -39304984 + (CA)n Simple_repeat Simple_repeat 1 30 0 21 36 0 0 chr3 188219855 188219883 -39304695 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 188220302 188220324 -39304254 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr3 188220400 188220431 -39304147 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 188221378 188221399 -39303179 + AT_rich Low_complexity Low_complexity 1 21 0 1783 263 111 14 chr3 188221507 188222172 -39302406 + L2 LINE L2 1484 2213 -1101 13645 205 26 11 chr3 188222180 188226540 -39298038 + L1P5 LINE L1 1344 5782 -369 363 96 0 0 chr3 188226541 188226593 -39297985 + (TA)n Simple_repeat Simple_repeat 1 52 0 27 29 0 0 chr3 188226602 188226636 -39297942 + AT_rich Low_complexity Low_complexity 1 34 0 188 35 35 0 chr3 188227238 188227267 -39297311 + (TA)n Simple_repeat Simple_repeat 1 30 0 22 0 0 0 chr3 188227325 188227347 -39297231 + AT_rich Low_complexity Low_complexity 1 22 0 23 86 0 0 chr3 188227570 188227628 -39296950 + AT_rich Low_complexity Low_complexity 1 58 0 230 232 0 18 chr3 188228256 188228312 -39296266 + GA-rich Low_complexity Low_complexity 2 56 0 28 48 0 0 chr3 188229107 188229149 -39295429 + AT_rich Low_complexity Low_complexity 1 42 0 25 31 0 0 chr3 188229619 188229651 -39294927 + AT_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr3 188229733 188229761 -39294817 + AT_rich Low_complexity Low_complexity 1 28 0 234 192 0 0 chr3 188230565 188230617 -39293961 + (TG)n Simple_repeat Simple_repeat 1 52 0 856 296 235 15 chr3 188230641 188231189 -39293389 - L2 LINE L2 -511 2803 2135 21 57 0 0 chr3 188231555 188231590 -39292988 + AT_rich Low_complexity Low_complexity 1 35 0 1409 220 24 51 chr3 188232569 188232905 -39291673 - MLT2B3 LTR ERVL -66 488 162 271 331 58 16 chr3 188234093 188234214 -39290364 - MIR SINE MIR -129 133 8 25 51 0 0 chr3 188235267 188235306 -39289272 + AT_rich Low_complexity Low_complexity 1 39 0 21 71 0 0 chr3 188235884 188235926 -39288652 + AT_rich Low_complexity Low_complexity 1 42 0 201 74 0 0 chr3 188236329 188236356 -39288222 + (TC)n Simple_repeat Simple_repeat 2 28 0 36 77 0 0 chr3 188236442 188236520 -39288058 + AT_rich Low_complexity Low_complexity 1 78 0 21 0 0 0 chr3 188237304 188237325 -39287253 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 188238344 188238372 -39286206 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr3 188238649 188238679 -39285899 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 0 chr3 188239649 188239675 -39284903 + AT_rich Low_complexity Low_complexity 1 26 0 3499 146 76 25 chr3 188239731 188240360 -39284218 - MER41-int LTR ERV1 -4340 1606 946 1344 120 116 5 chr3 188240396 188240612 -39283966 - MER41-int LTR ERV1 -5102 844 605 2827 96 10 0 chr3 188240613 188241007 -39283571 + MER41A LTR ERV1 157 554 0 1421 225 27 58 chr3 188241007 188241371 -39283207 + MLT1C LTR MaLR 113 465 -2 24 32 0 0 chr3 188241977 188242008 -39282570 + AT_rich Low_complexity Low_complexity 1 31 0 1220 106 0 0 chr3 188242615 188242785 -39281793 - AluY SINE Alu -7 304 135 241 203 54 14 chr3 188242798 188242872 -39281706 - L1M4 LINE L1 -2734 3412 3336 4658 204 51 52 chr3 188242880 188244605 -39279973 - L1MC2 LINE L1 -16 6328 4603 2326 86 0 0 chr3 188244605 188244906 -39279672 - AluY SINE Alu -8 303 3 4658 204 51 52 chr3 188244906 188244980 -39279598 - L1MC2 LINE L1 -1741 4603 4530 2207 94 13 0 chr3 188244980 188245287 -39279291 - AluY SINE Alu 0 311 1 4658 204 51 52 chr3 188245287 188245411 -39279167 - L1MC2 LINE L1 -1814 4530 4407 1354 200 55 0 chr3 188245411 188245686 -39278892 - AluJb SINE Alu -22 290 1 4658 204 51 52 chr3 188245686 188246179 -39278399 - L1MC2 LINE L1 -1937 4407 3930 1438 168 23 48 chr3 188246631 188246733 -39277845 - MLT2C2 LTR ERVL -160 304 201 2099 124 48 25 chr3 188246733 188247088 -39277490 + THE1B LTR MaLR 1 363 -1 1438 168 23 48 chr3 188247088 188247295 -39277283 - MLT2C2 LTR ERVL -263 201 3 334 169 0 0 chr3 188247496 188247567 -39277011 - L1MA5A LINE L1 -5 6292 6222 1254 109 47 0 chr3 188247567 188247760 -39276818 + L1MA5A LINE L1 6025 6226 -71 939 244 52 12 chr3 188247776 188248100 -39276478 + MER114 LTR ERV 1 337 -311 2311 89 0 0 chr3 188248813 188249106 -39275472 + AluY SINE Alu 1 293 -18 440 143 0 0 chr3 188249862 188249939 -39274639 + Alu SINE Alu 236 312 0 22 0 0 0 chr3 188250007 188250029 -39274549 + AT_rich Low_complexity Low_complexity 1 22 0 865 221 33 122 chr3 188250167 188250561 -39274017 - MLT1A1 LTR MaLR -4 361 3 498 200 31 0 chr3 188250581 188250711 -39273867 - L1MA7 LINE L1 -3 6288 6155 842 278 101 53 chr3 188252975 188253120 -39271458 + HAL1 LINE L1 1515 1652 -855 1404 259 56 79 chr3 188253120 188253726 -39270852 - MLT1E LTR MaLR -1 592 1 842 278 101 53 chr3 188253726 188254123 -39270455 + HAL1 LINE L1 1652 2083 -424 205 191 26 185 chr3 188254237 188254426 -39270152 - L2 LINE L2 -77 3236 3078 27 29 0 0 chr3 188254526 188254560 -39270018 + AT_rich Low_complexity Low_complexity 1 34 0 207 0 0 0 chr3 188254788 188254811 -39269767 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 183 267 93 27 chr3 188255514 188255589 -39268989 - L2 LINE L2 -46 3226 3147 1841 142 52 3 chr3 188257003 188257292 -39267286 - AluSx SINE Alu -9 303 1 22 35 0 0 chr3 188257353 188257382 -39267196 + AT_rich Low_complexity Low_complexity 1 29 0 297 0 0 0 chr3 188259871 188259904 -39264674 + (TC)n Simple_repeat Simple_repeat 2 34 0 2103 106 7 3 chr3 188259907 188260209 -39264369 - AluSg1 SINE Alu -6 303 1 317 328 43 24 chr3 188260705 188260958 -39263620 - MIR SINE MIR -3 259 2 3300 238 41 23 chr3 188261042 188262761 -39261817 - L1MB8 LINE L1 0 6178 4430 2818 148 6 0 chr3 188262761 188263242 -39261336 + L1MA5 LINE L1 5815 6298 -2 3300 238 41 23 chr3 188263242 188263353 -39261225 - L1MB8 LINE L1 -1748 4430 4322 9867 257 36 22 chr3 188263359 188266834 -39257744 + L1PA13 LINE L1 1 3425 -3372 2178 99 3 0 chr3 188266834 188267158 -39257420 + AluSp SINE Alu 1 313 0 9867 257 36 22 chr3 188267158 188268193 -39256385 + L1PA13 LINE L1 3425 4444 -2353 2360 82 3 0 chr3 188268193 188268497 -39256081 + AluY SINE Alu 1 305 -6 9867 257 36 22 chr3 188268497 188268909 -39255669 + L1PA13 LINE L1 4444 4849 -1948 234 0 0 0 chr3 188268909 188268935 -39255643 + (CA)n Simple_repeat Simple_repeat 1 26 0 9867 257 36 22 chr3 188268935 188269499 -39255079 + L1PA13 LINE L1 4849 5618 -1179 6888 62 6 0 chr3 188269499 188270875 -39253703 - L1PA5 LINE L1 0 6154 4772 28 71 0 0 chr3 188271192 188271248 -39253330 + AT_rich Low_complexity Low_complexity 1 56 0 231 241 0 0 chr3 188271340 188271394 -39253184 - LTR66 LTR ERVL -171 439 386 26 30 0 0 chr3 188271722 188271755 -39252823 + AT_rich Low_complexity Low_complexity 1 33 0 24 0 0 0 chr3 188271978 188272002 -39252576 + AT_rich Low_complexity Low_complexity 1 24 0 30 0 0 0 chr3 188272033 188272063 -39252515 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr3 188272720 188272749 -39251829 + AT_rich Low_complexity Low_complexity 1 29 0 500 263 129 122 chr3 188273278 188273853 -39250725 - L2 LINE L2 -441 2873 2295 841 260 39 5 chr3 188275598 188275806 -39248772 + MER20 DNA MER1_type 1 215 -4 2073 231 36 20 chr3 188275872 188276361 -39248217 + Tigger1 DNA MER2_type 1 497 -1921 338 93 56 0 chr3 188276361 188276415 -39248163 + Alu SINE Alu 1 57 -246 * 5331 151 23 14 chr3 188276413 188277255 -39247323 + Tigger1 DNA MER2_type 1453 2307 -111 1723 184 3 10 chr3 188277255 188277549 -39247029 - AluJb SINE Alu -20 292 1 5331 151 23 14 chr3 188277549 188277663 -39246915 + Tigger1 DNA MER2_type 2307 2418 0 1886 125 20 110 chr3 188278172 188278572 -39246006 + THE1B LTR MaLR 1 364 0 10897 113 6 14 chr3 188278572 188280161 -39244417 + THE1B-int LTR MaLR 1 1576 -4 1965 140 21 63 chr3 188280165 188280543 -39244035 + THE1B LTR MaLR 1 362 -2 286 336 45 15 chr3 188280864 188280998 -39243580 - MIR SINE MIR -118 144 7 180 335 130 49 chr3 188281351 188281721 -39242857 - L2 LINE L2 -609 2705 2306 499 274 134 18 chr3 188282362 188282526 -39242052 - MIR SINE MIR -74 188 6 252 230 48 48 chr3 188283143 188283269 -39241309 - L1ME4a LINE L1 -6 6115 5990 1063 190 30 0 chr3 188283482 188283682 -39240896 + MER2 DNA MER2_type 1 206 -139 26 50 0 0 chr3 188283689 188283729 -39240849 + AT_rich Low_complexity Low_complexity 1 40 0 183 216 0 0 chr3 188284005 188284042 -39240536 - MIR SINE MIR 0 262 226 252 0 0 0 chr3 188285082 188285110 -39239468 + (TTA)n Simple_repeat Simple_repeat 2 29 0 188 86 29 0 chr3 188285157 188285192 -39239386 + (TACTG)n Simple_repeat Simple_repeat 4 39 0 3892 249 51 38 chr3 188285264 188285938 -39238640 - L1 LINE L1 -2417 3553 2889 1997 139 0 7 chr3 188285938 188286241 -39238337 - AluSg SINE Alu -9 301 1 3892 249 51 38 chr3 188286241 188286478 -39238100 - L1 LINE L1 -3081 2889 2656 908 101 0 0 chr3 188286478 188286607 -39237971 - L1MA1 LINE L1 -4 6298 6170 3892 249 51 38 chr3 188286607 188287373 -39237205 - L1 LINE L1 -3314 2656 1847 2068 156 15 3 chr3 188287389 188287728 -39236850 + LTR3b LTR ERVK 158 500 0 719 333 34 3 chr3 188287728 188288049 -39236529 - L1 LINE L1 -4867 1024 694 339 395 30 6 chr3 188288191 188288358 -39236220 - L1 LINE L1 -5206 685 515 898 289 67 106 chr3 188288423 188289108 -39235470 - L1 LINE L1 -5213 678 4 27 81 0 0 chr3 188289684 188289746 -39234832 + AT_rich Low_complexity Low_complexity 1 62 0 25 31 0 0 chr3 188290923 188290955 -39233623 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 188291073 188291094 -39233484 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr3 188291264 188291295 -39233283 + (TG)n Simple_repeat Simple_repeat 2 32 0 29 47 0 0 chr3 188292031 188292074 -39232504 + AT_rich Low_complexity Low_complexity 1 43 0 234 174 0 0 chr3 188292478 188292524 -39232054 + (CA)n Simple_repeat Simple_repeat 2 47 0 2660 187 18 56 chr3 188292699 188293270 -39231308 + MLT2B3 LTR ERVL 6 554 0 338 259 76 8 chr3 188294335 188294466 -39230112 + L3 LINE CR1 1195 1334 -243 231 273 82 0 chr3 188295158 188295268 -39229310 - L1MC5 LINE L1 -30 7931 7813 1381 213 26 8 chr3 188295512 188295780 -39228798 + AluJb SINE Alu 7 279 -33 369 0 0 0 chr3 188295780 188295821 -39228757 + (CAA)n Simple_repeat Simple_repeat 1 41 0 3771 223 34 21 chr3 188295880 188297140 -39227438 - L1MB7 LINE L1 -3 6181 4901 24 0 0 0 chr3 188297497 188297521 -39227057 + AT_rich Low_complexity Low_complexity 1 24 0 720 220 0 93 chr3 188297522 188297775 -39226803 + L1M3 LINE L1 5324 5547 -621 335 390 46 54 chr3 188298044 188298465 -39226113 + L2 LINE L2 2179 2602 -712 180 0 0 0 chr3 188298465 188298485 -39226093 + (TTAA)n Simple_repeat Simple_repeat 1 20 0 2617 35 3 0 chr3 188298493 188298803 -39225775 - AluY SINE Alu 0 311 1 335 390 46 54 chr3 188298803 188299114 -39225464 + L2 LINE L2 2609 2914 -400 241 273 18 0 chr3 188299281 188299336 -39225242 + MER94 DNA DNA 78 133 -1 186 337 135 18 chr3 188299363 188299526 -39225052 + L2 LINE L2 2686 2867 -447 21 0 0 0 chr3 188300082 188300103 -39224475 + AT_rich Low_complexity Low_complexity 1 21 0 17201 169 11 49 chr3 188301325 188304568 -39220010 + L1MA7 LINE L1 11 3129 -4436 7750 189 12 13 chr3 188304552 188305339 -39219239 + L1MA7 LINE L1 5143 5929 -1795 * 1972 123 14 3 chr3 188305339 188305632 -39218946 + AluSc SINE Alu 1 296 -13 7750 189 12 13 chr3 188305632 188306771 -39217807 + L1MA7 LINE L1 5929 7064 -660 407 245 104 0 chr3 188306799 188306905 -39217673 + MER90 LTR ERV1 457 573 -41 23 33 0 0 chr3 188306905 188306935 -39217643 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 188307784 188307805 -39216773 + AT_rich Low_complexity Low_complexity 1 21 0 1196 257 0 29 chr3 188308044 188308355 -39216223 - AluJb SINE Alu 0 302 1 23 33 0 0 chr3 188308674 188308704 -39215874 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr3 188309763 188309788 -39214790 + AT_rich Low_complexity Low_complexity 1 25 0 1834 173 37 89 chr3 188310341 188310856 -39213722 + L1MA7 LINE L1 7202 7689 -21 180 345 17 26 chr3 188311189 188311305 -39213273 + L2 LINE L2 2229 2343 -971 21 0 0 0 chr3 188311802 188311823 -39212755 + AT_rich Low_complexity Low_complexity 1 21 0 33 97 0 0 chr3 188312680 188312783 -39211795 + AT_rich Low_complexity Low_complexity 1 103 0 566 261 141 30 chr3 188313032 188313231 -39211347 - MER52A LTR ERV1 -450 1305 1085 * 803 186 117 159 chr3 188313222 188313549 -39211029 - LTR28 LTR ERV1 -785 970 1 282 373 35 0 chr3 188313736 188313905 -39210673 - MIR SINE MIR -56 206 32 329 0 24 0 chr3 188315160 188315201 -39209377 + (GA)n Simple_repeat Simple_repeat 2 43 0 1003 214 23 39 chr3 188315394 188315651 -39208927 - L1MA7 LINE L1 -221 6070 5818 1118 153 4 77 chr3 188315663 188315924 -39208654 - L1MB8 LINE L1 -9 6169 5928 973 169 0 6 chr3 188315969 188316146 -39208432 + L1MA6 LINE L1 5887 6062 -238 922 152 12 195 chr3 188316159 188316482 -39208096 - L1MA7 LINE L1 -468 5832 5569 21 82 0 0 chr3 188316574 188316623 -39207955 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr3 188316834 188316870 -39207708 + AT_rich Low_complexity Low_complexity 1 36 0 263 325 25 70 chr3 188316885 188316931 -39207647 - MIR SINE MIR -66 196 149 2209 114 3 0 chr3 188316931 188317238 -39207340 + AluSg SINE Alu 1 308 -2 263 325 25 70 chr3 188317238 188317348 -39207230 - MIR SINE MIR -113 149 47 22 21 0 62 chr3 188317612 188317660 -39206918 + AT_rich Low_complexity Low_complexity 1 45 0 202 336 58 48 chr3 188317718 188317822 -39206756 + MIR3 SINE MIR 75 179 -29 387 357 31 18 chr3 188517829 188518056 -39006522 + L1MEc LINE L1 1565 1794 -4602 2126 112 10 13 chr3 188518105 188518409 -39006169 - AluSg SINE Alu -7 303 1 1140 249 104 83 chr3 188519050 188519433 -39005145 + MER97c DNA MER1_type? 12 410 -680 1981 149 0 7 chr3 188519433 188519729 -39004849 - AluSx SINE Alu -18 294 1 1140 249 104 83 chr3 188519729 188519862 -39004716 + MER97c DNA MER1_type? 410 539 -551 310 299 75 21 chr3 188519962 188520149 -39004429 + L1ME3A LINE L1 5972 6168 -2 281 338 29 31 chr3 188520243 188520428 -39004150 - MIR SINE MIR -1 261 74 344 303 83 8 chr3 188521190 188521322 -39003256 - MIR SINE MIR -62 200 59 571 207 97 17 chr3 188522127 188522364 -39002214 - MER97a DNA MER1_type? -5 889 634 1630 280 94 31 chr3 188522516 188523212 -39001366 + L2 LINE L2 2425 3195 -118 200 83 0 28 chr3 188523212 188523248 -39001330 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 1630 280 94 31 chr3 188523248 188523358 -39001220 + L2 LINE L2 3195 3297 -16 229 323 88 35 chr3 188523500 188523760 -39000818 - L2 LINE L2 -346 2968 2695 2395 231 119 27 chr3 188525591 188525823 -38998755 - L1MC4 LINE L1 -124 7918 7709 2187 112 3 3 chr3 188525823 188526127 -38998451 - AluSx SINE Alu -8 304 1 2395 231 119 27 chr3 188526127 188526793 -38997785 - L1MC4 LINE L1 -333 7709 6937 27 0 0 0 chr3 188527440 188527467 -38997111 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr3 188528260 188528284 -38996294 + AT_rich Low_complexity Low_complexity 1 24 0 1212 41 0 0 chr3 188528462 188528608 -38995970 + AluY SINE Alu 157 302 -9 228 191 0 24 chr3 188529132 188529174 -38995404 + MLT1L LTR MaLR 349 389 -226 485 300 110 31 chr3 188531993 188532220 -38992358 - MIR SINE MIR 0 262 18 238 261 14 14 chr3 188532315 188532384 -38992194 - MIR3 SINE MIR -6 202 134 216 373 0 0 chr3 188532489 188532564 -38992014 + L2 LINE L2 3231 3305 -8 198 273 0 18 chr3 188533596 188533651 -38990927 + L2 LINE L2 3257 3310 -3 1177 187 40 87 chr3 188533929 188534309 -38990269 + L1ME2 LINE L1 5803 6164 0 283 255 245 30 chr3 188534373 188534573 -38990005 - MARNA DNA Mariner -154 432 190 237 315 22 11 chr3 188535399 188535491 -38989087 + MIR3 SINE MIR 116 208 0 423 307 36 7 chr3 188536029 188536166 -38988412 - L3b LINE CR1 -88 1495 1355 514 269 123 6 chr3 188536328 188536499 -38988079 + MER58A DNA MER1_type 2 192 -32 268 355 100 3 chr3 188537245 188537391 -38987187 - MIR3 SINE MIR -18 190 33 10752 15 0 0 chr3 188537817 188539836 -38984742 - L1HS LINE L1 0 6155 4137 13716 27 0 0 chr3 188539854 188541504 -38983074 + L1P LINE L1 2366 4015 -2131 365 297 62 7 chr3 188543197 188543342 -38981236 - MER117 DNA MER1_type -7 190 38 201 74 0 0 chr3 188543726 188543753 -38980825 + (CA)n Simple_repeat Simple_repeat 2 28 0 320 318 19 9 chr3 188543911 188544018 -38980560 + MER5C DNA MER1_type 12 119 -205 19597 161 31 20 chr3 188544053 188546485 -38978093 + L1MA2 LINE L1 14 2419 -5304 577 89 33 0 chr3 188546485 188546575 -38978003 + L1PA5 LINE L1 6062 6154 0 19597 161 31 20 chr3 188546575 188548722 -38975856 + L1MA2 LINE L1 2419 4542 -3181 2299 103 0 3 chr3 188548722 188549034 -38975544 + AluSx SINE Alu 1 311 -1 19597 161 31 20 chr3 188549034 188552078 -38972500 + L1MA2 LINE L1 4542 7717 -6 217 160 20 20 chr3 188552135 188552185 -38972393 + MER5C DNA MER1_type 275 324 0 224 337 11 22 chr3 188552253 188552345 -38972233 + MIR SINE MIR 88 178 -84 749 263 168 29 chr3 188552380 188552761 -38971817 + MLT1J LTR MaLR 77 510 -1 262 239 137 17 chr3 188553243 188553360 -38971218 - L1MC5 LINE L1 -820 7141 7011 21 0 0 0 chr3 188553594 188553615 -38970963 + AT_rich Low_complexity Low_complexity 1 21 0 1018 292 66 29 chr3 188553791 188554404 -38970174 + L2 LINE L2 2675 3313 0 1884 191 48 17 chr3 188555548 188555980 -38968598 - MLT1C LTR MaLR 0 467 6 1965 124 17 0 chr3 188556095 188556385 -38968193 - AluSx SINE Alu -17 295 1 212 242 32 0 chr3 188557199 188557261 -38967317 + (TA)n Simple_repeat Simple_repeat 2 65 0 326 292 121 81 chr3 188557774 188558205 -38966373 + L1MEd LINE L1 662 1109 -5010 550 272 45 35 chr3 188558319 188558521 -38966057 - MLT1I LTR MaLR -199 210 7 2322 110 0 0 chr3 188558646 188558956 -38965622 + AluSg SINE Alu 1 310 0 213 65 0 0 chr3 188559125 188559156 -38965422 + (CA)n Simple_repeat Simple_repeat 2 32 0 2671 104 75 0 chr3 188559156 188559541 -38965037 - LTR46 LTR ERV1 -46 414 1 4361 57 67 10 chr3 188559614 188560212 -38964366 + L1PA6 LINE L1 5519 6150 -4 1725 280 94 17 chr3 188560224 188560767 -38963811 + L1ME1 LINE L1 35 635 -5761 3548 149 25 21 chr3 188560767 188561417 -38963161 + MER39B LTR ERV1 2 653 0 1725 280 94 17 chr3 188561417 188561508 -38963070 + L1ME1 LINE L1 635 718 -5678 * 7796 230 51 38 chr3 188561506 188562168 -38962410 + L1ME1 LINE L1 2757 3409 -2826 2099 114 0 36 chr3 188562168 188562475 -38962103 + AluSq SINE Alu 5 300 -13 7796 230 51 38 chr3 188562475 188562985 -38961593 + L1ME1 LINE L1 3409 3911 -2324 2322 94 34 17 chr3 188562985 188563337 -38961241 + L1PA12 LINE L1 5811 6168 0 7796 230 51 38 chr3 188563337 188563430 -38961148 + L1ME1 LINE L1 3911 4001 -2234 2295 139 3 16 chr3 188563430 188563780 -38960798 - L1PB1 LINE L1 -8 6143 5797 327 49 0 0 chr3 188563780 188563821 -38960757 + (TA)n Simple_repeat Simple_repeat 1 41 0 2295 139 3 16 chr3 188563821 188563857 -38960721 - L1PB1 LINE L1 -354 5797 5762 7796 230 51 38 chr3 188563857 188565194 -38959384 + L1ME1 LINE L1 4001 5407 -828 2761 146 15 6 chr3 188565194 188565674 -38958904 + L1MA4 LINE L1 5813 6296 -4 7796 230 51 38 chr3 188565674 188566509 -38958069 + L1ME1 LINE L1 5407 6230 -5 299 277 116 36 chr3 188566741 188566853 -38957725 - L3 LINE CR1 -80 1497 1377 272 336 98 0 chr3 188567330 188567348 -38957230 + MIR SINE MIR 103 118 -144 1599 214 20 50 chr3 188567348 188567749 -38956829 - MLT1B LTR MaLR -1 389 1 272 336 98 0 chr3 188567749 188567873 -38956705 + MIR SINE MIR 118 259 -3 194 127 254 56 chr3 188569175 188569246 -38955332 - L2 LINE L2 0 3313 3229 21 0 0 0 chr3 188570006 188570027 -38954551 + AT_rich Low_complexity Low_complexity 1 21 0 195 178 356 11 chr3 188570088 188570178 -38954400 + MER5C DNA MER1_type 1 121 -203 341 240 0 0 chr3 188570327 188570402 -38954176 - HsTC2 DNA Tc2 -1816 82 8 22 0 0 0 chr3 188570402 188570424 -38954154 + AT_rich Low_complexity Low_complexity 1 22 0 229 236 87 62 chr3 188571754 188571915 -38952663 - L1ME LINE L1 -273 5848 5684 202 261 115 62 chr3 188571916 188572046 -38952532 - MIR SINE MIR -54 208 72 308 275 199 0 chr3 188573241 188573372 -38951206 + MIR SINE MIR 106 262 0 229 358 12 12 chr3 188573407 188573488 -38951090 + MIR SINE MIR 20 100 -162 1991 101 17 7 chr3 188573490 188573777 -38950801 - AluSc SINE Alu -12 297 8 1422 209 3 16 chr3 188575035 188575341 -38949237 + AluJb SINE Alu 1 302 -10 396 317 91 30 chr3 188576389 188577079 -38947499 + L1 LINE L1 2896 3688 -2458 279 228 133 109 chr3 188577154 188577365 -38947213 + MLT1L LTR MaLR 40 255 -360 252 342 75 48 chr3 188577416 188577603 -38946975 + MLT1L LTR MaLR 346 537 -78 338 0 24 0 chr3 188577603 188577645 -38946933 + (CA)n Simple_repeat Simple_repeat 2 44 0 25 95 0 0 chr3 188577868 188577942 -38946636 + AT_rich Low_complexity Low_complexity 1 74 0 352 279 49 66 chr3 188578567 188578750 -38945828 + L1 LINE L1 4879 5058 -1088 332 374 14 7 chr3 188579639 188579778 -38944800 - Tigger8 DNA MER2_type -518 148 9 6155 34 0 7 chr3 188580201 188580945 -38943633 + L1PA4 LINE L1 5417 6155 0 251 221 0 13 chr3 188581218 188581295 -38943283 + (TA)n Simple_repeat Simple_repeat 1 76 0 328 311 75 73 chr3 188581652 188582280 -38942298 - HAL1 LINE L1 -732 1775 1147 40 21 0 0 chr3 188582391 188582438 -38942140 + AT_rich Low_complexity Low_complexity 1 47 0 233 289 87 39 chr3 188583449 188583657 -38940921 + L1ME4a LINE L1 5886 6103 -18 27 62 0 0 chr3 188583660 188583708 -38940870 + AT_rich Low_complexity Low_complexity 1 48 0 1673 205 25 33 chr3 188583957 188584352 -38940226 + Charlie1a DNA MER1_type 1 392 -1063 * 2195 164 60 91 chr3 188584348 188584787 -38939791 + Charlie1a DNA MER1_type 846 1297 -1464 243 0 0 0 chr3 188584787 188584814 -38939764 + (TA)n Simple_repeat Simple_repeat 2 28 0 2195 164 60 91 chr3 188584814 188584853 -38939725 + Charlie1a DNA MER1_type 1297 1336 -1425 2117 96 7 4 chr3 188584853 188585133 -38939445 + AluSc SINE Alu 6 286 -23 2195 164 60 91 chr3 188585133 188585172 -38939406 + Charlie1a DNA MER1_type 1336 1375 -1386 2035 112 0 0 chr3 188585172 188585441 -38939137 + AluSx SINE Alu 1 269 -43 2195 164 60 91 chr3 188585441 188585524 -38939054 + Charlie1a DNA MER1_type 1375 1429 -26 270 295 95 29 chr3 188585555 188585660 -38938918 - MIR SINE MIR -148 114 3 318 328 68 51 chr3 188586394 188586571 -38938007 - MER91A DNA MER1_type 0 196 17 1757 196 16 25 chr3 188587526 188587889 -38936689 - MLT1A1 LTR MaLR 0 365 6 459 0 0 0 chr3 188589768 188589819 -38934759 + (TG)n Simple_repeat Simple_repeat 2 52 0 206 320 77 83 chr3 188591654 188591835 -38932743 - L2 LINE L2 -10 3262 3083 1277 188 24 20 chr3 188591892 188592142 -38932436 + MLT1A1 LTR MaLR 115 365 0 319 189 98 70 chr3 188592310 188592453 -38932125 - L1MC5 LINE L1 -299 7662 7516 4965 52 0 0 chr3 188592513 188593148 -38931430 + L1P LINE L1 1542 2176 -3970 1335 111 10 0 chr3 188593170 188593378 -38931200 - L1MA5A LINE L1 -10 6287 6078 437 172 221 0 chr3 188594169 188594291 -38930287 - HsTC2 DNA Tc2 -2 1896 1748 373 187 13 0 chr3 188594538 188594623 -38929955 - HsTC2 DNA Tc2 -1812 86 1 192 275 150 0 chr3 188596317 188596397 -38928181 + MIR3 SINE MIR 99 190 -18 336 83 0 0 chr3 188597874 188597922 -38926656 + (CA)n Simple_repeat Simple_repeat 1 48 0 224 294 117 61 chr3 188599045 188599222 -38925356 - MIR SINE MIR -53 209 28 760 143 75 0 chr3 188599319 188599452 -38925126 + MER20 DNA MER1_type 77 219 0 811 202 45 63 chr3 188600221 188600444 -38924134 + MER20 DNA MER1_type 1 219 0 1562 201 44 85 chr3 188601664 188602191 -38922387 - MLT1D LTR MaLR 0 505 1 675 293 48 38 chr3 188602944 188603234 -38921344 - L2 LINE L2 -2 3311 3019 1949 136 14 0 chr3 188603368 188603655 -38920923 - AluSx SINE Alu -17 295 5 333 294 156 6 chr3 188604063 188604245 -38920333 - MIR SINE MIR -24 238 30 218 179 26 0 chr3 188604744 188604783 -38919795 + (TGG)n Simple_repeat Simple_repeat 1 40 0 623 319 50 13 chr3 188604785 188605023 -38919555 - MIR SINE MIR -14 248 2 823 273 87 12 chr3 188605202 188605444 -38919134 + MIR SINE MIR 1 260 -2 203 322 34 0 chr3 188605596 188605655 -38918923 + MIR SINE MIR 21 81 -127 1227 226 68 35 chr3 188606112 188606479 -38918099 - MLT1B LTR MaLR -11 379 1 232 319 32 11 chr3 188606642 188606736 -38917842 + MER117 DNA MER1_type 71 166 -31 195 360 45 9 chr3 188607120 188607231 -38917347 - MIR3 SINE MIR -4 204 90 339 286 36 43 chr3 188607776 188607801 -38916777 - MIR SINE MIR 0 262 238 1556 138 122 62 chr3 188607801 188608155 -38916423 - THE1C LTR MaLR 0 375 1 339 286 36 43 chr3 188608155 188608269 -38916309 - MIR SINE MIR -24 238 124 418 310 22 22 chr3 188609742 188609922 -38914656 + MIR SINE MIR 18 198 -53 22 35 0 0 chr3 188611903 188611932 -38912646 + AT_rich Low_complexity Low_complexity 1 29 0 268 291 127 9 chr3 188612197 188612307 -38912271 - L2 LINE L2 0 3272 3150 334 374 17 29 chr3 188612309 188612483 -38912095 - L3 LINE CR1 -6 1571 1400 222 37 0 0 chr3 188612524 188612551 -38912027 + (TAAA)n Simple_repeat Simple_repeat 3 29 0 248 26 0 53 chr3 188612989 188613027 -38911551 + (TATAG)n Simple_repeat Simple_repeat 2 37 0 845 243 98 118 chr3 188615224 188615792 -38908786 - MER77 LTR ERV1 -4 601 71 26 0 0 0 chr3 188616547 188616573 -38908005 + AT_rich Low_complexity Low_complexity 1 26 0 482 290 65 6 chr3 188616640 188616809 -38907769 + MIR SINE MIR 34 212 -50 24 53 0 0 chr3 188616868 188616906 -38907672 + AT_rich Low_complexity Low_complexity 1 38 0 180 0 0 0 chr3 188616949 188616969 -38907609 + (TG)n Simple_repeat Simple_repeat 2 21 0 415 279 13 7 chr3 188617039 188617193 -38907385 - MER103 DNA DNA -9 157 3 3101 174 30 2 chr3 188618341 188618870 -38905708 + Tigger7 DNA MER2_type 24 567 -1920 1667 113 53 83 chr3 188618868 188619126 -38905452 + Tigger7 DNA MER2_type 2260 2524 -63 * 198 0 0 0 chr3 188619126 188619148 -38905430 + (TG)n Simple_repeat Simple_repeat 2 23 0 198 0 0 0 chr3 188619147 188619169 -38905409 + (TA)n Simple_repeat Simple_repeat 1 22 0 1667 113 53 83 chr3 188619148 188619247 -38905331 + Tigger7 DNA MER2_type 2524 2586 -1 1001 282 17 0 chr3 188619818 188620052 -38904526 + MIR SINE MIR 1 238 -24 613 133 0 19 chr3 188620632 188620737 -38903841 - Tigger4(Zombi) DNA MER2_type 0 2731 2629 * 2081 96 33 71 chr3 188620734 188621130 -38903448 - Tigger4(Zombi) DNA MER2_type -56 2675 2295 560 172 0 0 chr3 188621127 188621214 -38903364 - Tigger4(Zombi) DNA MER2_type -2644 87 1 * 2246 106 7 0 chr3 188621214 188621516 -38903062 + AluSg SINE Alu 1 304 -6 2893 145 5 5 chr3 188621812 188622260 -38902318 - MLT1C LTR MaLR -19 448 1 404 338 107 14 chr3 188622661 188622877 -38901701 + MIR SINE MIR 27 262 0 341 356 10 0 chr3 188622872 188622976 -38901602 - MIR SINE MIR -64 144 40 * 1968 135 70 17 chr3 188623110 188623466 -38901112 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr3 188623641 188623664 -38900914 + AT_rich Low_complexity Low_complexity 1 23 0 2255 98 7 0 chr3 188623727 188624022 -38900556 - AluSq SINE Alu -16 297 1 182 304 174 0 chr3 188624276 188624345 -38900233 + L2 LINE L2 3219 3299 -14 2313 78 7 3 chr3 188624453 188624746 -38899832 - AluY SINE Alu -17 294 1 347 278 178 5 chr3 188625474 188625665 -38898913 + L1MC/D LINE L1 5588 5811 -1997 217 211 0 0 chr3 188625741 188625779 -38898799 + polypurine Low_complexity Low_complexity 3 40 0 22 56 0 0 chr3 188625948 188625984 -38898594 + AT_rich Low_complexity Low_complexity 1 36 0 306 194 0 0 chr3 188626066 188626133 -38898445 + (CATATA)n Simple_repeat Simple_repeat 2 68 0 23 33 0 0 chr3 188627018 188627048 -38897530 + AT_rich Low_complexity Low_complexity 1 30 0 204 253 13 13 chr3 188627918 188627997 -38896581 + (TTAA)n Simple_repeat Simple_repeat 2 80 0 352 223 239 8 chr3 188628677 188628807 -38895771 + MER5A DNA MER1_type 30 189 0 2755 17 0 0 chr3 188628919 188629221 -38895357 + AluY SINE Alu 1 302 -9 262 302 17 9 chr3 188630439 188630555 -38894023 + (TA)n Simple_repeat Simple_repeat 2 118 0 904 189 8 57 chr3 188630772 188631020 -38893558 + MER106A DNA MER1_type 1 236 0 21 0 0 0 chr3 188631102 188631123 -38893455 + AT_rich Low_complexity Low_complexity 1 21 0 439 245 133 58 chr3 188631748 188631936 -38892642 - MIR SINE MIR -1 261 60 1404 205 39 21 chr3 188631976 188632259 -38892319 + AluJo SINE Alu 1 288 -24 194 297 99 33 chr3 188634001 188634092 -38890486 - L2 LINE L2 -26 3287 3191 350 83 0 33 chr3 188634755 188634815 -38889763 + (TCCA)n Simple_repeat Simple_repeat 1 58 0 487 271 50 7 chr3 188634855 188634995 -38889583 - LTR16C LTR ERVL -19 472 327 2047 81 7 0 chr3 188635248 188635521 -38889057 + L1PA7 LINE L1 5879 6153 -1 334 335 70 5 chr3 188635679 188635879 -38888699 - L2 LINE L2 -217 3055 2843 275 180 56 67 chr3 188636295 188636384 -38888194 + MER34 LTR ERV1 449 536 -6 4927 90 10 12 chr3 188636404 188637126 -38887452 + L1PA13 LINE L1 5443 6162 -1 254 232 78 78 chr3 188637482 188637766 -38886812 - L1M4 LINE L1 -3597 2549 2266 1900 238 51 97 chr3 188638086 188638852 -38885726 + MER21B LTR ERV1 1 731 -132 25 0 0 0 chr3 188639037 188639062 -38885516 + AT_rich Low_complexity Low_complexity 1 25 0 315 0 0 0 chr3 188639062 188639097 -38885481 + (TG)n Simple_repeat Simple_repeat 2 36 0 30 0 0 0 chr3 188639135 188639165 -38885413 + AT_rich Low_complexity Low_complexity 1 30 0 230 104 0 21 chr3 188639337 188639385 -38885193 + (TTTG)n Simple_repeat Simple_repeat 2 48 0 1961 144 10 26 chr3 188639405 188639718 -38884860 - AluSx SINE Alu -4 308 1 221 57 29 0 chr3 188639725 188639760 -38884818 + (TTG)n Simple_repeat Simple_repeat 1 36 0 2023 133 0 0 chr3 188639763 188640041 -38884537 - AluSx SINE Alu -34 278 1 1785 174 0 25 chr3 188641035 188641351 -38883227 - AluJb SINE Alu -4 308 1 220 319 14 0 chr3 188641804 188641876 -38882702 + MIR SINE MIR 186 258 -4 198 91 0 0 chr3 188641912 188641945 -38882633 + (A)n Simple_repeat Simple_repeat 1 33 0 1278 198 99 0 chr3 188643622 188643864 -38880714 + AluJb SINE Alu 1 266 -46 4755 150 42 31 chr3 188644122 188645866 -38878712 + L1PA3 LINE L1 4405 6155 0 3087 143 37 34 chr3 188645885 188646481 -38878097 + L1MA8 LINE L1 5651 6248 -43 1059 165 28 0 chr3 188647249 188647431 -38877147 + MER5A DNA MER1_type 1 187 -2 237 261 11 33 chr3 188647555 188647647 -38876931 + GA-rich Low_complexity Low_complexity 1 90 0 1306 105 0 0 chr3 188648022 188648193 -38876385 - AluSg/x SINE Alu -16 296 126 220 438 76 7 chr3 188648558 188648702 -38875876 + L2 LINE L2 3119 3272 0 221 309 18 0 chr3 188650245 188650300 -38874278 - L2 LINE L2 -16 3256 3201 217 300 0 0 chr3 188650487 188650537 -38874041 + polypurine Low_complexity Low_complexity 3 52 0 267 274 0 0 chr3 188650563 188650625 -38873953 + (CATATA)n Simple_repeat Simple_repeat 2 63 0 211 323 58 45 chr3 188651120 188651275 -38873303 + L2 LINE L2 3104 3260 -12 2272 87 43 0 chr3 188651342 188651642 -38872936 - AluSp SINE Alu 0 313 1 31 44 0 0 chr3 188652110 188652155 -38872423 + AT_rich Low_complexity Low_complexity 1 45 0 409 325 56 7 chr3 188652177 188652331 -38872247 + MIR SINE MIR 48 210 -52 197 336 26 62 chr3 188654884 188654997 -38869581 + L2 LINE L2 3137 3245 -27 199 352 66 0 chr3 188655271 188655362 -38869216 + L2 LINE L2 2579 2675 -639 377 290 69 28 chr3 188656418 188656563 -38868015 - L3b LINE CR1 -163 1420 1270 2043 123 7 7 chr3 188657851 188658153 -38866425 + AluSx SINE Alu 1 302 -10 658 295 58 39 chr3 188658371 188658890 -38865688 + L1ME4a LINE L1 5524 6052 -69 21 0 0 0 chr3 188658924 188658945 -38865633 + AT_rich Low_complexity Low_complexity 1 21 0 268 222 161 0 chr3 188659051 188659132 -38865446 - MER94 DNA DNA -40 94 1 269 343 37 0 chr3 188660379 188660487 -38864091 - L3 LINE CR1 -1003 574 463 713 291 101 0 chr3 188660729 188660956 -38863622 - MIR SINE MIR -10 252 3 246 250 12 12 chr3 188662243 188662323 -38862255 + A-rich Low_complexity Low_complexity 2 81 0 27 0 0 0 chr3 188662387 188662414 -38862164 + AT_rich Low_complexity Low_complexity 1 27 0 458 316 26 7 chr3 188662430 188662582 -38861996 + MIR SINE MIR 3 157 -105 29 60 0 0 chr3 188662595 188662645 -38861933 + AT_rich Low_complexity Low_complexity 1 50 0 295 289 62 36 chr3 188664110 188664304 -38860274 + MIR SINE MIR 6 204 -58 180 359 76 99 chr3 188664602 188664825 -38859753 - L2 LINE L2 -56 3216 2999 258 361 57 0 chr3 188665070 188665192 -38859386 + MIR SINE MIR 28 156 -106 1145 291 94 34 chr3 188665497 188666264 -38858314 - L2 LINE L2 0 3313 2507 429 20 0 0 chr3 188666346 188666396 -38858182 + (CA)n Simple_repeat Simple_repeat 2 51 0 207 0 0 0 chr3 188666910 188666933 -38857645 + (A)n Simple_repeat Simple_repeat 1 23 0 494 346 63 53 chr3 188667918 188668317 -38856261 + L2 LINE L2 2869 3271 -1 653 263 127 4 chr3 188669225 188669453 -38855125 - MIR SINE MIR -5 257 2 239 331 172 19 chr3 188669485 188669793 -38854785 + L2 LINE L2 2159 2513 -801 263 372 88 47 chr3 188670036 188670420 -38854158 + L2 LINE L2 2867 3266 -6 229 231 51 17 chr3 188671006 188671123 -38853455 + L1ME4a LINE L1 5989 6109 -12 512 322 94 17 chr3 188671515 188671748 -38852830 + MIR SINE MIR 12 262 0 1119 197 10 0 chr3 188671801 188672009 -38852569 + MER2 DNA MER2_type 2 211 -134 971 224 95 27 chr3 188672735 188673105 -38851473 - L1ME4a LINE L1 -2 6119 5725 2346 94 0 3 chr3 188674132 188674431 -38850147 + AluSg SINE Alu 1 298 -12 1718 154 3 7 chr3 188674902 188675207 -38849371 - L1PB4 LINE L1 -2 6154 5851 2204 142 61 93 chr3 188675211 188675738 -38848840 - L1PB4 LINE L1 -204 5952 5443 2011 133 0 14 chr3 188675965 188676258 -38848320 + AluJb SINE Alu 2 290 -22 937 236 80 20 chr3 188676375 188676676 -38847902 - MER46C DNA MER2_type -15 323 5 839 125 0 0 chr3 188676851 188676987 -38847591 + L1MA8 LINE L1 6153 6288 -3 1643 148 83 40 chr3 188676992 188677316 -38847262 + L1MB2 LINE L1 5487 5824 -347 556 126 0 45 chr3 188677316 188677427 -38847151 + L1PA15 LINE L1 6054 6159 -6 1560 173 50 3 chr3 188677427 188677763 -38846815 + L1MB2 LINE L1 5814 6171 0 2216 104 3 7 chr3 188677933 188678230 -38846348 - AluSp SINE Alu -17 296 1 1344 147 28 20 chr3 188680033 188680285 -38844293 - L1MA9 LINE L1 0 6312 6059 287 301 175 74 chr3 188682321 188682630 -38841948 + L2 LINE L2 2932 3271 -1 1840 220 51 37 chr3 188682894 188683404 -38841174 + LTR40a LTR ERVL 1 517 -2 217 161 62 37 chr3 188683431 188683512 -38841066 + (TAAA)n Simple_repeat Simple_repeat 1 83 0 785 228 15 123 chr3 188683533 188683801 -38840777 + MIR SINE MIR 3 241 -21 255 262 128 52 chr3 188684322 188684494 -38840084 - L2 LINE L2 -994 2320 2136 683 281 42 50 chr3 188685296 188685399 -38839179 + MIR SINE MIR 8 110 -152 1841 135 74 41 chr3 188685399 188685762 -38838816 + THE1C LTR MaLR 1 375 0 9064 133 25 51 chr3 188685764 188687384 -38837194 + THE1C-int LTR MaLR 3 1580 0 1800 143 51 43 chr3 188687386 188687756 -38836822 + THE1C LTR MaLR 3 375 0 683 281 42 50 chr3 188687756 188687884 -38836694 + MIR SINE MIR 112 243 -19 2024 130 7 3 chr3 188688023 188688308 -38836270 + AluSx SINE Alu 1 286 -26 1457 219 56 34 chr3 188688374 188688731 -38835847 + MLT1A1 LTR MaLR 1 365 0 21 0 0 0 chr3 188688761 188688782 -38835796 + AT_rich Low_complexity Low_complexity 1 21 0 622 240 157 0 chr3 188689903 188690107 -38834471 + MIR SINE MIR 9 244 -18 207 0 0 0 chr3 188693945 188693968 -38830610 + (A)n Simple_repeat Simple_repeat 1 23 0 2258 66 30 3 chr3 188694202 188694503 -38830075 - AluSg SINE Alu -1 309 1 21 0 0 0 chr3 188695055 188695076 -38829502 + AT_rich Low_complexity Low_complexity 1 21 0 4582 172 31 2 chr3 188697490 188698360 -38826218 - L1MB2 LINE L1 -10 6161 5267 5690 145 21 1 chr3 188698362 188699292 -38825286 - Tigger1 DNA MER2_type -4 2414 1466 4514 157 65 29 chr3 188699518 188700493 -38824085 + L1MB7 LINE L1 5180 6184 0 261 279 0 25 chr3 188700951 188701030 -38823548 + GA-rich Low_complexity Low_complexity 2 78 0 194 271 68 0 chr3 188701192 188701251 -38823327 - L2 LINE L2 -218 3054 2992 895 190 75 0 chr3 188701326 188701500 -38823078 + MER5A DNA MER1_type 3 189 0 1427 283 156 39 chr3 188701567 188703471 -38821107 + HAL1 LINE L1 1 2152 -355 360 340 146 21 chr3 188703513 188703848 -38820730 - L2 LINE L2 -55 3258 2882 2007 68 61 4 chr3 188706624 188706888 -38817690 + AluY SINE Alu 1 279 -32 213 65 0 0 chr3 188706891 188706922 -38817656 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 413 276 28 21 chr3 188710172 188710317 -38814261 + L2 LINE L2 3167 3312 -1 234 322 0 11 chr3 188710369 188710456 -38814122 + A-rich Low_complexity Low_complexity 4 89 0 797 287 39 18 chr3 188710759 188711045 -38813533 - LTR40b LTR ERVL -38 424 133 2407 207 8 8 chr3 188712862 188713398 -38811180 - L1PA16 LINE L1 -1034 5112 4577 4884 152 31 2 chr3 188713399 188714397 -38810181 + L1PA16 LINE L1 5130 6156 -10 210 71 0 0 chr3 188714537 188714565 -38810013 + (T)n Simple_repeat Simple_repeat 1 28 0 1463 159 0 0 chr3 188714946 188715191 -38809387 + L1MA8 LINE L1 5583 5827 -464 482 323 70 6 chr3 188716119 188716277 -38808301 + MIR3 SINE MIR 23 190 -18 339 317 28 14 chr3 188716384 188716526 -38808052 + MLT1K LTR MaLR 103 246 -342 400 276 77 41 chr3 188716582 188716803 -38807775 + MLT1K LTR MaLR 359 587 -1 1723 187 0 0 chr3 188717070 188717364 -38807214 - AluJo SINE Alu -5 307 14 604 273 51 0 chr3 188718247 188718423 -38806155 + LTR33 LTR ERVL 1 185 -336 779 217 133 0 chr3 188718527 188718707 -38805871 - MER20 DNA MER1_type 0 219 16 428 227 114 15 chr3 188718820 188718952 -38805626 + LTR33 LTR ERVL 377 521 0 289 234 57 64 chr3 188719613 188719754 -38804824 + MLT1K LTR MaLR 449 588 0 259 306 0 31 chr3 188719757 188719855 -38804723 - L2 LINE L2 0 3313 3219 310 283 0 30 chr3 188721076 188721175 -38803403 + MER5B DNA MER1_type 1 96 -82 22 0 0 0 chr3 188721232 188721254 -38803324 + AT_rich Low_complexity Low_complexity 1 22 0 285 29 0 0 chr3 188721836 188721870 -38802708 + (TG)n Simple_repeat Simple_repeat 2 35 0 189 320 101 76 chr3 188723239 188723528 -38801050 - L2 LINE L2 -1218 2096 1797 755 207 26 47 chr3 188723528 188723721 -38800857 + MER5A DNA MER1_type 1 189 0 189 320 101 76 chr3 188723721 188723747 -38800831 - L2 LINE L2 -1517 1797 1773 206 224 20 0 chr3 188723980 188724029 -38800549 + GA-rich Low_complexity Low_complexity 5 54 0 839 284 109 37 chr3 188724215 188724817 -38799761 + MER115 DNA AcHobo 6 693 0 242 321 54 33 chr3 188726053 188726209 -38798369 - MIR SINE MIR -64 144 30 300 267 152 47 chr3 188726262 188726453 -38798125 - MIR SINE MIR -44 218 8 24 32 0 0 chr3 188726605 188726636 -38797942 + AT_rich Low_complexity Low_complexity 1 31 0 304 111 0 0 chr3 188726828 188726873 -38797705 + SATR1 Satellite Satellite 55 99 -371 1208 184 5 14 chr3 188726873 188727085 -38797493 - AluJb SINE Alu -98 214 5 244 298 218 24 chr3 188727932 188728056 -38796522 - MIR SINE MIR -34 228 81 213 163 82 0 chr3 188728497 188728546 -38796032 + GA-rich Low_complexity Low_complexity 2 54 0 627 119 0 67 chr3 188728710 188728844 -38795734 - AluJb SINE Alu -187 125 1 249 227 41 93 chr3 188729639 188729736 -38794842 + MIR SINE MIR 97 188 -74 715 50 30 0 chr3 188730144 188730245 -38794333 - AluSg/x SINE Alu -8 304 201 298 128 0 0 chr3 188730247 188730294 -38794284 - SATR1 Satellite Satellite -346 124 78 1361 98 0 0 chr3 188730442 188730615 -38793963 - AluY SINE Alu -138 173 1 180 97 0 0 chr3 188730618 188730649 -38793929 + (T)n Simple_repeat Simple_repeat 1 31 0 22 35 0 0 chr3 188730961 188730990 -38793588 + AT_rich Low_complexity Low_complexity 1 29 0 453 305 54 20 chr3 188731338 188731541 -38793037 - MIR SINE MIR -48 214 5 383 290 0 11 chr3 188731760 188731853 -38792725 - L2 LINE L2 -43 3270 3179 2178 166 101 21 chr3 188731989 188733747 -38790831 - SATR1 Satellite Satellite 0 1898 1 2416 148 115 1 chr3 188733777 188735431 -38789147 - SATR1 Satellite Satellite -48 1841 1 2135 122 0 10 chr3 188735531 188735827 -38788751 - AluSc SINE Alu -16 293 1 27 0 0 0 chr3 188736069 188736096 -38788482 + AT_rich Low_complexity Low_complexity 1 27 0 275 346 44 39 chr3 188736096 188736278 -38788300 + MER5A DNA MER1_type 7 189 0 275 378 44 15 chr3 188736653 188736857 -38787721 - MIR SINE MIR 0 262 53 2396 74 3 0 chr3 188737941 188738251 -38786327 + AluY SINE Alu 1 311 0 353 327 171 24 chr3 188738305 188738510 -38786068 + MIR SINE MIR 20 254 -8 200 260 143 0 chr3 188738732 188738809 -38785769 + MIR SINE MIR 119 206 -56 202 189 0 0 chr3 188739528 188739565 -38785013 + (TG)n Simple_repeat Simple_repeat 2 38 0 218 313 0 0 chr3 188739828 188739876 -38784702 + MIR SINE MIR 6 53 -209 346 287 157 27 chr3 188741204 188741427 -38783151 + L2 LINE L2 2817 3068 -245 599 243 29 50 chr3 188741773 188742012 -38782566 - HAL1 LINE L1 -861 1646 1413 1297 176 42 0 chr3 188742021 188742283 -38782295 - L1MB3 LINE L1 -3 6180 5908 365 323 92 12 chr3 188742299 188742463 -38782115 + L2 LINE L2 3121 3297 -16 1014 171 84 70 chr3 188742966 188743253 -38781325 - MER58B DNA MER1_type -42 299 9 1241 199 100 65 chr3 188743892 188744293 -38780285 - SATR1 Satellite Satellite -44 426 12 1294 194 246 34 chr3 188744335 188747410 -38777168 - SATR1 Satellite Satellite -53 3727 1 6612 69 11 7 chr3 188747510 188748532 -38776046 - MER11B LTR ERVK -67 1004 1 744 329 128 13 chr3 188748599 188749190 -38775388 - L2 LINE L2 -251 3021 2375 486 49 0 0 chr3 188750024 188750085 -38774493 + (GA)n Simple_repeat Simple_repeat 2 62 0 205 88 29 0 chr3 188752431 188752465 -38772113 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 2259 112 3 0 chr3 188753029 188753341 -38771237 - AluSq SINE Alu 0 313 1 245 301 58 73 chr3 188753639 188754034 -38770544 - MLT1J LTR MaLR -33 478 90 703 32 0 11 chr3 188754327 188754420 -38770158 + AluSp/q SINE Alu 215 306 -7 3592 238 59 71 chr3 188754431 188755274 -38769304 + L1MD2 LINE L1 3510 4362 -1784 1932 188 81 5 chr3 188755274 188755668 -38768910 + MSTB LTR MaLR 1 424 -2 3592 238 59 71 chr3 188755668 188756598 -38767980 + L1MD2 LINE L1 4362 5261 -885 330 226 60 0 chr3 188756617 188756701 -38767877 + L1MC4 LINE L1 6615 6703 -1339 321 218 0 109 chr3 188756626 188756727 -38767851 - L1MC4 LINE L1 -1339 6703 6614 * 3577 164 81 32 chr3 188756727 188757564 -38767014 + L1MD2 LINE L1 5285 6162 -197 237 33 0 0 chr3 188757626 188757656 -38766922 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1890 131 0 3 chr3 188757658 188757940 -38766638 - AluSx SINE Alu -31 281 1 1331 187 19 6 chr3 188758338 188758653 -38765925 - L1MC3 LINE L1 0 7785 7467 266 299 0 0 chr3 188759873 188759940 -38764638 + L2 LINE L2 3205 3271 -1 24 0 0 0 chr3 188760389 188760413 -38764165 + AT_rich Low_complexity Low_complexity 1 24 0 387 344 95 28 chr3 188760810 188761095 -38763483 + L2 LINE L2 2224 2527 -787 1213 156 0 0 chr3 188761128 188761333 -38763245 - Tigger4(Zombi) DNA MER2_type 0 2731 2527 1103 198 198 0 chr3 188761329 188761597 -38762981 - Tigger4(Zombi) DNA MER2_type -2410 321 1 * 265 376 113 28 chr3 188761606 188761970 -38762608 + L2 LINE L2 2579 2973 -341 198 230 50 80 chr3 188762167 188762267 -38762311 + L3 LINE CR1 605 701 -876 * 541 300 73 24 chr3 188762246 188762493 -38762085 - MIR SINE MIR -2 260 2 219 295 26 96 chr3 188762561 188762717 -38761861 + L3 LINE CR1 204 348 -1229 300 328 42 8 chr3 188762883 188763002 -38761576 - MER5A DNA MER1_type 0 189 67 556 222 37 0 chr3 188763146 188763254 -38761324 - MER81 DNA DNA -2 112 1 279 274 187 27 chr3 188763356 188763575 -38761003 + MLT1K LTR MaLR 335 588 0 1005 236 67 20 chr3 188763747 188764001 -38760577 + L3 LINE CR1 742 1007 -570 2324 98 3 0 chr3 188764139 188764435 -38760143 - AluSg SINE Alu -13 297 1 1366 193 38 4 chr3 188764646 188764884 -38759694 + AluJo SINE Alu 37 282 -30 783 316 126 50 chr3 188766506 188767378 -38757200 + L2 LINE L2 1865 2802 -512 322 352 16 0 chr3 188767672 188767800 -38756778 + GA-rich Low_complexity Low_complexity 2 131 0 186 133 0 0 chr3 188767800 188767830 -38756748 + (GGAA)n Simple_repeat Simple_repeat 4 33 0 225 0 0 0 chr3 188768058 188768083 -38756495 + (T)n Simple_repeat Simple_repeat 1 25 0 493 302 33 28 chr3 188769668 188769850 -38754728 - MER5A DNA MER1_type 0 189 7 560 322 57 75 chr3 188769954 188771333 -38753245 + L1PA15-16 LINE L1 67 1417 -5446 850 82 0 9 chr3 188771474 188771584 -38752994 - AluSp SINE Alu -204 109 1 994 251 59 65 chr3 188771585 188772004 -38752574 - L1M4 LINE L1 -2633 3513 3096 1545 98 24 4 chr3 188772004 188772259 -38752319 - L1MA2 LINE L1 0 6304 6045 994 251 59 65 chr3 188772259 188772412 -38752166 - L1M4 LINE L1 -3050 3096 2944 1785 240 91 16 chr3 188772433 188773161 -38751417 - L1MDb LINE L1 -5512 897 3 * 1952 230 134 22 chr3 188773154 188773239 -38751339 - L1M4 LINE L1 -952 5194 5120 2464 139 46 7 chr3 188773239 188773649 -38750929 - MSTA LTR MaLR 0 428 3 9426 164 24 1 chr3 188773649 188775262 -38749316 - MSTA-int LTR MaLR 0 1651 1 2593 131 41 5 chr3 188775262 188775675 -38748903 - MSTA LTR MaLR 0 428 1 1952 230 134 22 chr3 188775675 188776313 -38748265 - L1M4 LINE L1 -1025 5121 4388 23 92 0 0 chr3 188776358 188776423 -38748155 + AT_rich Low_complexity Low_complexity 1 65 0 870 251 105 3 chr3 188776423 188776970 -38747608 - L1M4 LINE L1 -2001 4145 3510 2242 60 18 7 chr3 188777588 188777904 -38746674 - AluY SINE Alu 0 319 1 21 36 0 0 chr3 188778299 188778327 -38746251 + AT_rich Low_complexity Low_complexity 1 28 0 238 320 64 47 chr3 188778483 188778655 -38745923 + L2 LINE L2 1752 1926 -1388 271 239 0 109 chr3 188779231 188779323 -38745255 - MER91B DNA MER1_type -103 87 6 270 187 104 60 chr3 188779983 188780117 -38744461 - L1ME4a LINE L1 -165 5956 5817 249 319 17 17 chr3 188780264 188780380 -38744198 - L1ME4a LINE L1 -458 5663 5548 220 349 119 18 chr3 188780412 188780690 -38743888 + L3 LINE CR1 404 709 -868 338 311 75 9 chr3 188780736 188780842 -38743736 + MIR SINE MIR 8 120 -142 29 47 0 0 chr3 188780948 188780991 -38743587 + AT_rich Low_complexity Low_complexity 1 43 0 263 342 17 8 chr3 188781090 188781210 -38743368 + MIR SINE MIR 141 261 -1 651 320 81 47 chr3 188781386 188781829 -38742749 + L3 LINE CR1 936 1393 -184 21 0 0 0 chr3 188782552 188782573 -38742005 + AT_rich Low_complexity Low_complexity 1 21 0 2082 97 59 0 chr3 188782649 188782937 -38741641 + AluSc SINE Alu 1 305 -4 1089 232 14 0 chr3 188782961 188783181 -38741397 - MER58A DNA MER1_type -1 223 1 30 45 0 0 chr3 188783385 188783429 -38741149 + AT_rich Low_complexity Low_complexity 1 44 0 732 231 0 46 chr3 188783745 188783918 -38740660 - FRAM SINE Alu -1 165 1 417 225 95 12 chr3 188784026 188784195 -38740383 + MER113 DNA MER1_type? 6 188 -333 1594 178 3 3 chr3 188786167 188786453 -38738125 + L1MB5 LINE L1 5881 6166 -8 430 235 78 119 chr3 188786512 188786857 -38737721 + Charlie8 DNA MER1_type 175 505 -1912 559 232 93 122 chr3 188787228 188787582 -38736996 + MER77 LTR ERV1 41 384 -221 532 231 15 0 chr3 188887588 188887722 -38636856 + L1M4 LINE L1 3544 3679 -2467 673 158 16 0 chr3 188887733 188887860 -38636718 + L1PB2 LINE L1 6021 6149 -2 248 364 93 7 chr3 188887901 188888041 -38636537 + MIR3 SINE MIR 57 208 0 1754 85 67 48 chr3 188888946 188889216 -38635362 - AluY SINE Alu 0 311 37 31 26 0 0 chr3 188889804 188889842 -38634736 + AT_rich Low_complexity Low_complexity 1 38 0 846 196 42 6 chr3 188889999 188890167 -38634411 + MER96 DNA MER1_type 1 174 -1 824 167 8 0 chr3 188890336 188890468 -38634110 + FLAM_A SINE Alu 1 133 0 23 54 0 0 chr3 188890505 188890542 -38634036 + AT_rich Low_complexity Low_complexity 1 37 0 1856 121 48 3 chr3 188890989 188891278 -38633300 - AluSx SINE Alu -10 302 1 1983 97 10 13 chr3 188891386 188891684 -38632894 - L1PA10 LINE L1 -10 6158 5862 201 244 0 0 chr3 188892346 188892391 -38632187 + CT-rich Low_complexity Low_complexity 2 46 0 3943 207 93 24 chr3 188892441 188892563 -38632015 + L1MC3 LINE L1 5948 6060 -1725 1701 194 101 32 chr3 188892563 188893000 -38631578 - MLT1C LTR MaLR 0 467 1 3943 207 93 24 chr3 188893000 188893942 -38630636 + L1MC3 LINE L1 6060 7085 -700 252 333 0 10 chr3 188893942 188894044 -38630534 + MLT1F1 LTR MaLR 24 124 -443 754 187 19 19 chr3 188894045 188894200 -38630378 + L1MC3 LINE L1 7191 7345 -440 211 317 242 0 chr3 188894362 188894523 -38630055 - MIR SINE MIR -61 201 2 21 57 0 0 chr3 188894557 188894592 -38629986 + AT_rich Low_complexity Low_complexity 1 35 0 548 240 128 6 chr3 188894630 188894809 -38629769 - MER82 DNA MER2_type -5 648 448 469 301 27 14 chr3 188894846 188894992 -38629586 + MIR SINE MIR 3 150 -112 375 253 0 0 chr3 188895112 188895187 -38629391 - MER82 DNA MER2_type -557 96 22 1711 159 6 29 chr3 188895204 188895518 -38629060 - AluJo SINE Alu 0 312 6 209 195 0 0 chr3 188897489 188897530 -38627048 + GA-rich Low_complexity Low_complexity 2 42 0 207 139 0 0 chr3 188897959 188897995 -38626583 + (TA)n Simple_repeat Simple_repeat 2 37 0 30 45 0 0 chr3 188898184 188898228 -38626350 + AT_rich Low_complexity Low_complexity 1 44 0 2208 209 22 11 chr3 188898839 188899302 -38625276 - MER70A LTR ERVL -4 468 1 204 97 0 0 chr3 188899997 188900028 -38624550 + (CA)n Simple_repeat Simple_repeat 1 31 0 628 268 36 36 chr3 188901061 188901281 -38623297 - MIR SINE MIR -41 221 2 360 0 0 0 chr3 188902015 188902055 -38622523 + (TTTA)n Simple_repeat Simple_repeat 1 40 0 180 77 0 0 chr3 188902241 188902267 -38622311 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 610 326 83 37 chr3 188902270 188902754 -38621824 - L2 LINE L2 -15 3298 2794 36264 100 13 8 chr3 188902789 188908904 -38615674 - L1PA6 LINE L1 0 6154 11 230 359 82 57 chr3 188908912 188909157 -38615421 - L2 LINE L2 -531 2783 2533 21 0 0 0 chr3 188909412 188909433 -38615145 + AT_rich Low_complexity Low_complexity 1 21 0 2228 111 0 7 chr3 188909878 188910185 -38614393 + AluSc SINE Alu 1 305 -4 23 0 0 0 chr3 188911008 188911031 -38613547 + AT_rich Low_complexity Low_complexity 1 23 0 197 298 0 0 chr3 188913009 188913066 -38611512 - MIR SINE MIR -12 250 194 540 308 36 36 chr3 188913092 188913339 -38611239 + L2 LINE L2 2376 2622 -692 1021 206 12 36 chr3 188913363 188913611 -38610967 + L1MD3 LINE L1 7729 7970 -25 2228 111 3 0 chr3 188913735 188914041 -38610537 - AluSg SINE Alu -3 307 1 229 255 0 0 chr3 188917623 188917670 -38606908 + CT-rich Low_complexity Low_complexity 3 49 0 268 244 12 49 chr3 188917940 188918022 -38606556 - L2 LINE L2 0 3313 3235 182 291 136 19 chr3 188918076 188918179 -38606399 - L2 LINE L2 -19 3294 3180 226 175 0 18 chr3 188919054 188919111 -38605467 + LTR66 LTR ERVL 385 440 -170 30 69 0 0 chr3 188919321 188919379 -38605199 + AT_rich Low_complexity Low_complexity 1 58 0 2352 58 14 3 chr3 188921236 188921530 -38603048 - AluY SINE Alu -14 297 1 221 133 22 22 chr3 188922532 188922577 -38602001 + (TA)n Simple_repeat Simple_repeat 2 46 0 243 0 0 0 chr3 188922589 188922616 -38601962 + (CA)n Simple_repeat Simple_repeat 2 28 0 22 35 0 0 chr3 188923401 188923430 -38601148 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr3 188923760 188923797 -38600781 + AT_rich Low_complexity Low_complexity 1 37 0 183 220 0 0 chr3 188924278 188924328 -38600250 + A-rich Low_complexity Low_complexity 1 50 0 213 213 0 0 chr3 188925191 188925238 -38599340 + (TG)n Simple_repeat Simple_repeat 2 48 0 27 0 0 0 chr3 188925872 188925899 -38598679 + AT_rich Low_complexity Low_complexity 1 27 0 378 0 0 0 chr3 188926163 188926205 -38598373 + (TG)n Simple_repeat Simple_repeat 2 43 0 192 135 0 0 chr3 188927613 188927650 -38596928 + (CCA)n Simple_repeat Simple_repeat 1 37 0 23 33 0 0 chr3 188930499 188930529 -38594049 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr3 188931478 188931508 -38593070 + AT_rich Low_complexity Low_complexity 1 30 0 309 26 0 0 chr3 188932054 188932092 -38592486 + (TG)n Simple_repeat Simple_repeat 2 39 0 330 26 0 0 chr3 188932229 188932268 -38592310 + (TTTC)n Simple_repeat Simple_repeat 2 40 0 213 128 26 0 chr3 188935372 188935411 -38589167 + G-rich Low_complexity Low_complexity 2 41 0 180 0 0 0 chr3 188935443 188935463 -38589115 + (CGG)n Simple_repeat Simple_repeat 3 22 0 797 52 9 0 chr3 188935825 188935940 -38588638 + (TC)n Simple_repeat Simple_repeat 1 116 0 480 364 20 10 chr3 188939366 188939499 -38585079 - L3 LINE CR1 -1 1576 1439 450 67 0 0 chr3 188939499 188939559 -38585019 - L1PA10 LINE L1 -8 6160 6101 480 364 20 10 chr3 188939559 188939620 -38584958 - L3 LINE CR1 -138 1439 1380 998 324 78 16 chr3 188942067 188942698 -38581880 + L2 LINE L2 2635 3312 -1 1294 291 119 28 chr3 188943413 188943950 -38580628 + MLT1E LTR MaLR 8 593 0 31 68 0 0 chr3 188944370 188944429 -38580149 + AT_rich Low_complexity Low_complexity 1 59 0 279 0 0 0 chr3 188944923 188944954 -38579624 + (CAAAA)n Simple_repeat Simple_repeat 5 35 0 236 263 188 38 chr3 188947836 188947969 -38576609 + L2 LINE L2 3161 3313 0 1901 158 0 7 chr3 188949812 188950103 -38574475 - AluJb SINE Alu -23 289 1 437 331 119 40 chr3 188950965 188951216 -38573362 + L2 LINE L2 2986 3256 -16 302 125 0 0 chr3 188951401 188951449 -38573129 + L1PA13 LINE L1 6105 6152 -11 29 0 0 0 chr3 188951449 188951478 -38573100 + AT_rich Low_complexity Low_complexity 1 29 0 338 226 61 35 chr3 188951546 188951661 -38572917 - MIR SINE MIR -64 198 81 316 252 159 65 chr3 188952112 188952433 -38572145 - L1ME4a LINE L1 -3 6118 5768 206 309 105 40 chr3 188952746 188952898 -38571680 - MIR SINE MIR -92 170 9 304 290 43 0 chr3 188952940 188953033 -38571545 + MIR SINE MIR 106 202 -60 481 287 60 48 chr3 188954391 188954642 -38569936 - L3b LINE CR1 -102 1481 1228 186 43 0 0 chr3 188955593 188955616 -38568962 + (ATTAG)n Simple_repeat Simple_repeat 3 25 0 394 271 58 116 chr3 188957524 188957830 -38566748 - L2 LINE L2 -728 2586 2313 866 237 18 40 chr3 188957830 188958054 -38566524 - MER20 DNA MER1_type 0 219 1 394 271 58 116 chr3 188958054 188958197 -38566381 - L2 LINE L2 -1001 2313 2163 827 339 60 62 chr3 188958349 188959142 -38565436 - L3 LINE CR1 -202 1375 584 313 289 116 41 chr3 188959333 188959575 -38565003 + L1ME4a LINE L1 5861 6120 -1 2200 88 0 55 chr3 188960042 188960370 -38564208 + AluSq SINE Alu 1 310 -3 2062 141 0 7 chr3 188961754 188962052 -38562526 + AluSx SINE Alu 1 296 -16 2189 120 10 0 chr3 188962870 188963178 -38561400 + AluSx SINE Alu 2 312 0 416 208 9 0 chr3 188964022 188964128 -38560450 + CT-rich Low_complexity Low_complexity 3 109 0 786 189 56 11 chr3 188964666 188964846 -38559732 + MER5A DNA MER1_type 1 188 -1 583 258 114 0 chr3 188965113 188965280 -38559298 + MIR SINE MIR 51 236 -26 510 335 29 6 chr3 188966393 188966563 -38558015 - MIR3 SINE MIR -8 200 27 455 246 64 76 chr3 188966676 188966847 -38557731 - MIR SINE MIR -13 249 81 22 0 0 0 chr3 188967090 188967112 -38557466 + AT_rich Low_complexity Low_complexity 1 22 0 1044 211 41 56 chr3 188967112 188967410 -38557168 - MLT1E LTR MaLR -46 530 262 4745 184 17 24 chr3 188967488 188968903 -38555675 - L1MA7 LINE L1 0 6291 4884 2113 178 30 84 chr3 188968901 188969540 -38555038 + L1MA7 LINE L1 4273 4876 -1270 * 39 38 0 0 chr3 188969606 188969659 -38554919 + AT_rich Low_complexity Low_complexity 1 53 0 43 20 0 0 chr3 188970110 188970160 -38554418 + AT_rich Low_complexity Low_complexity 1 50 0 386 326 155 5 chr3 188970234 188970421 -38554157 - MIR SINE MIR -24 238 24 183 80 0 0 chr3 188972316 188972341 -38552237 + (A)n Simple_repeat Simple_repeat 1 25 0 294 254 82 60 chr3 188972739 188972873 -38551705 - LTR16A LTR ERVL 0 450 314 378 0 0 0 chr3 188972931 188972973 -38551605 + (TTTA)n Simple_repeat Simple_repeat 2 43 0 1943 134 0 3 chr3 188972976 188973259 -38551319 - AluSx SINE Alu -30 282 1 633 167 125 75 chr3 188973623 188973928 -38550650 - MER33 DNA MER1_type -4 320 1 1702 217 21 92 chr3 188974282 188975419 -38549159 - L1ME1 LINE L1 -4 6162 4945 2182 99 3 0 chr3 188975419 188975702 -38548876 + AluSx SINE Alu 1 284 -28 610 115 0 0 chr3 188975615 188975702 -38548876 + AluY SINE Alu 197 305 0 199 0 0 0 chr3 188975702 188975724 -38548854 + (TAAA)n Simple_repeat Simple_repeat 2 72 0 1702 217 21 92 chr3 188975724 188975837 -38548741 - L1ME1 LINE L1 -1220 4946 5055 1876 148 3 23 chr3 188975837 188976141 -38548437 - AluSx SINE Alu -14 298 1 1702 217 21 92 chr3 188976141 188976236 -38548342 - L1ME1 LINE L1 -1110 5056 4956 286 292 79 0 chr3 188976233 188976322 -38548256 - L1MEc LINE L1 -6211 185 90 * 529 226 20 0 chr3 188977852 188977954 -38546624 + MER5A DNA MER1_type 9 112 -77 215 232 42 63 chr3 188978642 188978737 -38545841 - L2 LINE L2 0 3313 3221 200 265 229 12 chr3 188978811 188978894 -38545684 - L2 LINE L2 -268 3004 2904 371 138 15 0 chr3 188979259 188979324 -38545254 - MER92C LTR ERV1 0 554 489 305 264 64 55 chr3 188979417 188979471 -38545107 - MER92B LTR ERV1 -525 111 59 1861 176 30 28 chr3 188979471 188979834 -38544744 + THE1B LTR MaLR 1 364 0 305 264 64 55 chr3 188979834 188979889 -38544689 - MER92B LTR ERV1 -577 59 1 21 36 0 0 chr3 188980023 188980051 -38544527 + AT_rich Low_complexity Low_complexity 1 28 0 571 244 68 86 chr3 188980456 188980677 -38543901 + MER20 DNA MER1_type 1 217 -2 2065 170 45 47 chr3 188981517 188981963 -38542615 - MER65A LTR ERV1 0 445 1 2252 252 51 23 chr3 188981963 188983104 -38541474 - MER65A-int LTR ERV1 -1 4870 3595 305 82 143 0 chr3 188983095 188983144 -38541434 - MER65A-int LTR ERV1 -939 5392 5337 * 2305 227 70 38 chr3 188983239 188984027 -38540551 - MER65A-int LTR ERV1 -1214 5117 4305 854 239 97 27 chr3 188984075 188984448 -38540130 - MER65A-int LTR ERV1 -1900 3036 2638 645 161 0 35 chr3 188984455 188984598 -38539980 - MER65A-int LTR ERV1 -2730 3868 3731 432 214 20 70 chr3 188984678 188984879 -38539699 - MER65A-int LTR ERV1 -2868 3730 3540 1251 196 18 57 chr3 188985153 188985725 -38538853 - MER65A-int LTR ERV1 -4323 2435 1720 1171 134 0 12 chr3 188985914 188986086 -38538492 - AluSq SINE Alu -143 170 1 3580 205 98 77 chr3 188986089 188986366 -38538212 - MER65A-int LTR ERV1 -2382 2489 2219 1561 160 84 34 chr3 188986366 188986723 -38537855 - THE1C LTR MaLR 0 375 1 3580 205 98 77 chr3 188986723 188988972 -38535606 - MER65A-int LTR ERV1 -2652 2219 11 2028 120 30 142 chr3 188988978 188989479 -38535099 - MER65A LTR ERV1 0 445 1 21 0 0 0 chr3 188989581 188989602 -38534976 + AT_rich Low_complexity Low_complexity 1 21 0 204 204 37 0 chr3 188989603 188989657 -38534921 + T-rich Low_complexity Low_complexity 4 59 0 735 280 39 79 chr3 188989901 188990462 -38534116 - MER39 LTR ERV1 -2 682 1 375 255 94 71 chr3 188990465 188990632 -38533946 - MER102b DNA MER1_type -1111 317 142 2256 101 7 0 chr3 188990632 188990938 -38533640 - AluY SINE Alu -3 308 1 375 255 94 71 chr3 188990938 188990982 -38533596 - MER102b DNA MER1_type -1286 142 101 213 132 0 0 chr3 188990994 188991032 -38533546 + (TTTTC)n Simple_repeat Simple_repeat 2 39 0 333 258 53 99 chr3 188991634 188991917 -38532661 - MER65A LTR ERV1 0 445 176 247 297 85 8 chr3 188992061 188992179 -38532399 - MER65B LTR ERV1 -403 128 2 561 247 0 108 chr3 188992193 188992379 -38532199 + MER5B DNA MER1_type 10 175 -3 36 40 0 0 chr3 188992767 188992817 -38531761 + AT_rich Low_complexity Low_complexity 1 50 0 426 109 0 31 chr3 188992832 188992896 -38531682 - MER5A DNA MER1_type -1 188 127 1393 127 5 0 chr3 188992896 188993101 -38531477 + AluSg/x SINE Alu 80 285 -27 562 230 22 7 chr3 188993109 188993244 -38531334 - MER5A DNA MER1_type -52 137 1 276 300 86 0 chr3 188993302 188993372 -38531206 + MIR3 SINE MIR 92 167 -41 367 299 126 18 chr3 188994790 188994957 -38529621 + MIR3 SINE MIR 15 199 -9 628 159 110 48 chr3 188995323 188995468 -38529110 + FRAM SINE Alu 1 154 -22 1321 250 101 104 chr3 188996853 188997293 -38527285 - MER21B LTR ERV1 -130 733 293 1917 128 0 3 chr3 188997293 188997611 -38526967 - AluSc SINE Alu 0 317 1 1321 250 101 104 chr3 188997611 188997881 -38526697 - MER21B LTR ERV1 -570 293 24 22 23 0 45 chr3 188998047 188998068 -38526510 + AT_rich Low_complexity Low_complexity 1 21 -21 469 225 75 0 chr3 188998068 188998188 -38526390 - FLAM_A SINE Alu -3 130 2 22 23 0 45 chr3 188998188 188998210 -38526368 + AT_rich Low_complexity Low_complexity 21 42 0 200 273 41 91 chr3 188999243 188999364 -38525214 - MIR3 SINE MIR -1 207 93 311 277 0 102 chr3 188999390 188999556 -38525022 - L2 LINE L2 0 3313 3165 394 326 136 18 chr3 188999626 188999847 -38524731 - HAL1 LINE L1 -1008 1499 1253 219 260 8 41 chr3 189000142 189000265 -38524313 + T-rich Low_complexity Low_complexity 1 119 0 21 36 0 0 chr3 189000278 189000306 -38524272 + AT_rich Low_complexity Low_complexity 1 28 0 259 218 18 36 chr3 189000311 189000421 -38524157 + T-rich Low_complexity Low_complexity 3 110 0 252 143 0 63 chr3 189000926 189000989 -38523589 + (TTAA)n Simple_repeat Simple_repeat 2 60 0 514 238 61 0 chr3 189001013 189001160 -38523418 + HAL1 LINE L1 1613 1768 -739 255 254 0 0 chr3 189001209 189001272 -38523306 - MIR SINE MIR -42 220 158 197 116 0 23 chr3 189001626 189001669 -38522909 + (CA)n Simple_repeat Simple_repeat 2 43 0 373 293 126 37 chr3 189001669 189001768 -38522810 + HAL1 LINE L1 2078 2167 -340 1685 128 4 4 chr3 189001768 189002025 -38522553 + AluSg SINE Alu 44 300 -10 373 293 126 37 chr3 189002025 189002219 -38522359 + HAL1 LINE L1 2167 2397 -110 231 364 100 21 chr3 189002604 189002843 -38521735 + L2 LINE L2 2378 2635 -679 2156 90 0 0 chr3 189002939 189003217 -38521361 + AluSc SINE Alu 17 294 -15 354 343 48 19 chr3 189003598 189003805 -38520773 - HAL1b LINE L1 -912 436 224 1058 89 17 11 chr3 189004363 189004463 -38520115 + (TTCC)n Simple_repeat Simple_repeat 1 280 0 1058 89 17 11 chr3 189004463 189004642 -38519936 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 1483 194 40 11 chr3 189004691 189004993 -38519585 - AluSx SINE Alu 0 433 118 333 93 0 0 chr3 189004993 189005047 -38519531 + (TG)n Simple_repeat Simple_repeat 2 55 0 1483 194 40 11 chr3 189005047 189005168 -38519410 - AluSx SINE Alu -315 118 2 1566 221 59 22 chr3 189005633 189006059 -38518519 - L1MB8 LINE L1 -5 6173 5727 415 352 35 0 chr3 189006335 189006477 -38518101 + L3 LINE CR1 1430 1576 -1 29 0 0 0 chr3 189006780 189006809 -38517769 + AT_rich Low_complexity Low_complexity 1 29 0 858 300 78 38 chr3 189006944 189007418 -38517160 - MLT1D LTR MaLR 0 505 13 21 0 0 0 chr3 189008122 189008143 -38516435 + AT_rich Low_complexity Low_complexity 1 21 0 1725 34 0 0 chr3 189008651 189008859 -38515719 - L1PA4 LINE L1 -1 6154 5947 3544 50 2 0 chr3 189008867 189009328 -38515250 - L1P LINE L1 -4489 1657 1196 1707 229 122 60 chr3 189009933 189010295 -38514283 + Zaphod DNA AcHobo 150 488 -3543 2347 81 7 0 chr3 189010295 189010604 -38513974 - AluY SINE Alu 0 311 1 1707 229 122 60 chr3 189010604 189011014 -38513564 + Zaphod DNA AcHobo 488 970 -3061 756 262 28 81 chr3 189011032 189011467 -38513111 + Zaphod DNA AcHobo 3618 4029 -2 428 186 8 81 chr3 189011726 189011850 -38512728 + FAM SINE Alu 29 143 -42 228 285 199 7 chr3 189012922 189013073 -38511505 - HAL1b LINE L1 -864 484 305 503 294 84 35 chr3 189013289 189013446 -38511132 + L2 LINE L2 2943 3091 -222 3537 29 0 0 chr3 189013446 189013865 -38510713 - L1PA3 LINE L1 -3 6152 5734 * 11858 179 19 20 chr3 189013863 189016792 -38507786 - L1PA13 LINE L1 -4 6159 3243 503 294 84 35 chr3 189013865 189016792 -38507786 + L2 LINE L2 3091 2746 -567 2096 135 48 25 chr3 189016792 189017148 -38507430 - THE1B LTR MaLR 0 364 1 503 294 84 35 chr3 189017148 189017672 -38506906 + L2 LINE L2 2745 3242 -71 11858 179 19 20 chr3 189017148 189017543 -38507035 - L1PA13 LINE L1 -2920 3243 2849 654 160 0 21 chr3 189018768 189018912 -38505666 + CT-rich Low_complexity Low_complexity 3 143 0 439 225 7 65 chr3 189019935 189020073 -38504505 + Charlie1 DNA MER1_type 32 161 -2600 317 215 13 47 chr3 189020123 189020272 -38504306 - Charlie1 DNA MER1_type -140 2621 2478 2064 122 6 3 chr3 189021075 189021386 -38503192 - AluSx SINE Alu 0 312 1 317 129 0 16 chr3 189023051 189023113 -38501465 + (CAAAA)n Simple_repeat Simple_repeat 5 65 0 270 116 0 0 chr3 189023202 189023245 -38501333 + (CA)n Simple_repeat Simple_repeat 2 44 0 217 290 58 0 chr3 189023686 189023755 -38500823 + MIR3 SINE MIR 107 179 -29 27 49 0 0 chr3 189024988 189025029 -38499549 + AT_rich Low_complexity Low_complexity 1 41 0 25 31 0 0 chr3 189025978 189026010 -38498568 + AT_rich Low_complexity Low_complexity 1 32 0 180 200 0 0 chr3 189026983 189027028 -38497550 + (TTTA)n Simple_repeat Simple_repeat 4 48 0 898 135 7 7 chr3 189028371 189028519 -38496059 - L1PA16 LINE L1 -13 6153 6006 5218 199 31 9 chr3 189028636 189030568 -38494010 - L1PA16 LINE L1 -161 6005 4031 23 0 0 0 chr3 189030733 189030756 -38493822 + AT_rich Low_complexity Low_complexity 1 23 0 324 301 67 42 chr3 189031079 189031318 -38493260 + L1M4 LINE L1 2874 3118 -3028 809 341 80 8 chr3 189031612 189031999 -38492579 + LTR16A LTR ERVL 26 440 -10 651 248 15 61 chr3 189032479 189032677 -38491901 + AluJo SINE Alu 86 274 -38 826 182 21 5 chr3 189032677 189033070 -38491508 + GA-rich Low_complexity Low_complexity 1 399 0 1346 53 80 0 chr3 189034069 189034257 -38490321 - L1MA1 LINE L1 0 6302 6100 513 277 66 47 chr3 189034633 189034846 -38489732 - MIR SINE MIR 0 262 46 28 29 0 0 chr3 189035280 189035315 -38489263 + AT_rich Low_complexity Low_complexity 1 35 0 2165 219 51 42 chr3 189036284 189036833 -38487745 - MLT2B3 LTR ERVL 0 554 1 3329 126 2 23 chr3 189036902 189036999 -38487579 - MER75 DNA T2_type 0 514 416 2264 60 3 7 chr3 189036999 189037306 -38487272 - AluY SINE Alu 0 306 1 3329 126 2 23 chr3 189037306 189037732 -38486846 - MER75 DNA T2_type -98 416 1 227 274 32 57 chr3 189038057 189038181 -38486397 + L2 LINE L2 3117 3237 -76 1411 183 7 10 chr3 189040090 189040390 -38484188 + L1MA4 LINE L1 5998 6296 -4 2017 118 0 61 chr3 189040411 189040724 -38483854 + AluSx SINE Alu 3 296 -16 2727 3 0 0 chr3 189040724 189041021 -38483557 + AluYa5 SINE Alu 1 298 -13 27 73 0 0 chr3 189044423 189044478 -38480100 + AT_rich Low_complexity Low_complexity 1 55 0 10810 191 56 24 chr3 189044544 189046869 -38477709 + L1PB4 LINE L1 2667 5083 -1221 1790 174 13 0 chr3 189046869 189047168 -38477410 + AluSx SINE Alu 1 303 -9 10810 191 56 24 chr3 189047168 189047663 -38476915 + L1PB4 LINE L1 5083 5561 -743 272 30 0 0 chr3 189047699 189047732 -38476846 - MADE1 DNA Mariner -18 62 30 1932 162 46 3 chr3 189047741 189048092 -38476486 + L1PB4 LINE L1 5789 6154 -2 1696 110 0 48 chr3 189048102 189048374 -38476204 - L1M1 LINE L1 -516 5786 5528 1287 90 21 0 chr3 189048374 189048560 -38476018 + L1MA1 LINE L1 6111 6302 0 5557 149 21 5 chr3 189048562 189049555 -38475023 + L1MA3 LINE L1 5297 6305 0 342 263 74 11 chr3 189050001 189050096 -38474482 + MIR3 SINE MIR 69 169 -39 254 367 10 0 chr3 189051273 189051371 -38473207 - MIR SINE MIR -111 151 53 200 111 0 67 chr3 189051516 189051561 -38473017 + (TTTTTA)n Simple_repeat Simple_repeat 3 44 0 513 0 0 0 chr3 189051849 189051906 -38472672 + (TA)n Simple_repeat Simple_repeat 1 57 0 24 32 0 0 chr3 189052852 189052883 -38471695 + AT_rich Low_complexity Low_complexity 1 31 0 6445 152 22 17 chr3 189053128 189054971 -38469607 - L1MA3 LINE L1 -5 7719 5887 243 0 0 0 chr3 189054971 189054998 -38469580 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 5547 14 0 0 chr3 189055008 189055635 -38468943 - L1PA2 LINE L1 -7 6148 5522 6445 152 22 17 chr3 189055635 189055713 -38468865 - L1MA3 LINE L1 -1845 5879 5777 4252 165 57 19 chr3 189055695 189055725 -38468853 - L1MA3 LINE L1 -3220 4345 4318 * 13491 32 1 1 chr3 189055725 189058112 -38466466 - L1PA3 LINE L1 -3 6152 3766 4252 165 57 19 chr3 189058112 189058541 -38466037 - L1MA3 LINE L1 -3247 4318 3906 1431 210 30 0 chr3 189058541 189058849 -38465729 - AluJb SINE Alu 0 319 4 4252 165 57 19 chr3 189058849 189059815 -38464763 - L1MA3 LINE L1 -3659 3906 2864 2223 122 127 5 chr3 189059816 189060186 -38464392 + MSTA LTR MaLR 14 428 0 2480 85 14 0 chr3 189060186 189060538 -38464040 - L1MA3 LINE L1 -4694 2871 2515 9548 198 45 18 chr3 189060538 189062454 -38462124 - L1MA3 LINE L1 -5589 1976 9 33 25 0 0 chr3 189062587 189062627 -38461951 + AT_rich Low_complexity Low_complexity 1 40 0 1532 117 142 4 chr3 189064072 189064346 -38460232 + AluSx SINE Alu 1 312 0 181 160 20 20 chr3 189064608 189064658 -38459920 + (CATATA)n Simple_repeat Simple_repeat 2 51 0 1676 111 31 11 chr3 189065092 189065353 -38459225 - L1MA2 LINE L1 -424 5880 5615 971 148 0 6 chr3 189065353 189065519 -38459059 + L1MA2 LINE L1 6137 6304 0 302 298 86 63 chr3 189066280 189066535 -38458043 - MIR SINE MIR 0 262 2 291 237 97 21 chr3 189066645 189066738 -38457840 - MIR3 SINE MIR -9 199 100 187 304 29 14 chr3 189067008 189067077 -38457501 - MIR SINE MIR -10 252 183 2546 169 34 6 chr3 189067246 189067748 -38456830 - L1MA9 LINE L1 -8 6304 5789 262 221 22 39 chr3 189067754 189067935 -38456643 + (TATATG)n Simple_repeat Simple_repeat 1 178 0 239 111 22 22 chr3 189067943 189067988 -38456590 + L1MC4 LINE L1 6658 6702 -1340 1863 161 13 0 chr3 189067999 189068309 -38456269 - MER7A DNA MER2_type -23 323 12 228 346 37 0 chr3 189068347 189068454 -38456124 + (CATATA)n Simple_repeat Simple_repeat 2 112 0 2863 156 16 18 chr3 189068454 189068985 -38455593 - L1MA9 LINE L1 -532 5780 5247 1585 212 39 20 chr3 189068985 189069343 -38455235 - MLT1A1 LTR MaLR 0 365 1 2863 156 16 18 chr3 189069343 189069382 -38455196 - L1MA9 LINE L1 -1065 5247 5209 428 133 25 87 chr3 189069385 189069409 -38455169 - L1M4 LINE L1 -872 5274 5250 1610 156 0 4 chr3 189069409 189069678 -38454900 - AluJb SINE Alu -44 268 1 428 133 25 87 chr3 189069678 189069773 -38454805 - L1M4 LINE L1 -896 5250 5157 477 259 46 15 chr3 189070132 189070263 -38454315 + MER5A DNA MER1_type 49 183 -6 726 267 108 39 chr3 189070773 189071106 -38453472 - L3b LINE CR1 -116 1467 1112 613 326 91 20 chr3 189072941 189073294 -38451284 - L2 LINE L2 -121 3192 2815 50 18 0 0 chr3 189073351 189073408 -38451170 + AT_rich Low_complexity Low_complexity 1 57 0 30 93 0 0 chr3 189073799 189073885 -38450693 + AT_rich Low_complexity Low_complexity 1 86 0 1961 124 0 0 chr3 189074773 189075040 -38449538 + AluSx SINE Alu 1 267 -45 363 328 122 11 chr3 189075937 189076117 -38448461 + MIR SINE MIR 47 246 -16 4893 218 91 31 chr3 189076152 189076910 -38447668 - Charlie1a DNA MER1_type -1348 1413 539 2390 76 0 25 chr3 189076910 189077226 -38447352 - AluY SINE Alu -3 308 1 4893 218 91 31 chr3 189077226 189077800 -38446778 - Charlie1a DNA MER1_type -2222 539 1 22 0 0 0 chr3 189078995 189079017 -38445561 + AT_rich Low_complexity Low_complexity 1 22 0 211 0 88 0 chr3 189079460 189079494 -38445084 + (TCTA)n Simple_repeat Simple_repeat 2 38 0 23 0 0 0 chr3 189079875 189079898 -38444680 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr3 189080771 189080798 -38443780 + AT_rich Low_complexity Low_complexity 1 27 0 2197 167 69 41 chr3 189081326 189081387 -38443191 + MER41B LTR ERV1 113 171 -315 2351 74 0 0 chr3 189081387 189081685 -38442893 + AluY SINE Alu 1 298 -13 2197 167 69 41 chr3 189081685 189082133 -38442445 + MER41B LTR ERV1 171 474 -12 29 28 0 0 chr3 189082762 189082798 -38441780 + AT_rich Low_complexity Low_complexity 1 36 0 1192 196 43 31 chr3 189082802 189083057 -38441521 - AluJo SINE Alu -50 262 5 2168 120 0 0 chr3 189083097 189083388 -38441190 + AluSg SINE Alu 7 297 -13 503 306 17 28 chr3 189083397 189083577 -38441001 - MIR SINE MIR 0 262 85 378 91 0 0 chr3 189083699 189083754 -38440824 + (TG)n Simple_repeat Simple_repeat 2 56 0 1476 185 169 8 chr3 189084151 189084336 -38440242 + MSTA LTR MaLR 1 155 -273 339 25 0 0 chr3 189084336 189084376 -38440202 + (TC)n Simple_repeat Simple_repeat 1 40 0 1476 185 169 8 chr3 189084376 189084557 -38440021 + MSTA LTR MaLR 155 426 -2 278 310 44 25 chr3 189085370 189085528 -38439050 + L2 LINE L2 2601 2761 -553 223 324 28 0 chr3 189085825 189085896 -38438682 + L2 LINE L2 3200 3272 0 1868 128 35 0 chr3 189086931 189087220 -38437358 - AluY SINE Alu -12 299 1 189 0 0 0 chr3 189087279 189087300 -38437278 + (T)n Simple_repeat Simple_repeat 1 21 0 949 187 6 6 chr3 189087443 189087625 -38436953 - AluJo SINE Alu -9 303 122 513 0 0 0 chr3 189088128 189088185 -38436393 + (TA)n Simple_repeat Simple_repeat 2 58 0 27 0 0 0 chr3 189088769 189088796 -38435782 + AT_rich Low_complexity Low_complexity 1 27 0 1367 78 0 113 chr3 189089332 189089563 -38435015 - AluY SINE Alu -1 310 106 2165 77 0 0 chr3 189089956 189090228 -38434350 - AluSx SINE Alu -38 274 3 27 0 0 0 chr3 189093023 189093050 -38431528 + AT_rich Low_complexity Low_complexity 1 27 0 816 326 93 21 chr3 189093545 189093669 -38430909 - LTR16A LTR ERVL 0 450 336 2344 59 0 0 chr3 189093669 189093955 -38430623 + AluY SINE Alu 11 296 -15 816 326 93 21 chr3 189093955 189094250 -38430328 - LTR16A LTR ERVL -114 336 1 189 74 0 0 chr3 189094300 189094327 -38430251 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 302 265 81 26 chr3 189095320 189095474 -38429104 + MLT1J LTR MaLR 235 321 -190 313 299 120 12 chr3 189095991 189096158 -38428420 + MIR SINE MIR 63 247 -15 21 0 0 0 chr3 189096320 189096341 -38428237 + AT_rich Low_complexity Low_complexity 1 21 0 1655 207 0 0 chr3 189096562 189096867 -38427711 - AluJb SINE Alu -3 309 5 22 0 0 0 chr3 189097127 189097149 -38427429 + AT_rich Low_complexity Low_complexity 1 22 0 193 337 150 10 chr3 189097775 189097968 -38426610 - MIR SINE MIR -28 234 15 22 35 0 0 chr3 189097970 189097999 -38426579 + AT_rich Low_complexity Low_complexity 1 29 0 2276 125 19 19 chr3 189098017 189098392 -38426186 - THE1C LTR MaLR 0 375 1 306 292 51 51 chr3 189099030 189099167 -38425411 - MLT1J2 LTR MaLR -34 416 280 21 0 0 0 chr3 189099265 189099286 -38425292 + AT_rich Low_complexity Low_complexity 1 21 0 2071 150 25 10 chr3 189099453 189099847 -38424731 - L1MA7 LINE L1 0 7007 6608 3038 27 8 0 chr3 189099903 189100268 -38424310 - L1PA4 LINE L1 -2 6153 5786 2012 34 0 0 chr3 189100268 189100505 -38424073 + L1PA4 LINE L1 5552 5788 -367 * 4509 182 22 10 chr3 189100501 189101945 -38422633 - L1MA7 LINE L1 -384 6623 5162 193 286 29 43 chr3 189102175 189102245 -38422333 + MIR SINE MIR 78 146 -116 433 263 188 27 chr3 189102302 189102526 -38422052 + MIR SINE MIR 3 262 0 1281 99 6 22 chr3 189102609 189102791 -38421787 - AluSg/x SINE Alu -4 308 130 234 0 0 0 chr3 189103134 189103160 -38421418 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 244 244 195 32 chr3 189103373 189103496 -38421082 - MIR SINE MIR -70 192 50 426 136 45 11 chr3 189104096 189104211 -38420367 - AluSg/x SINE Alu 0 309 203 2281 212 30 11 chr3 189104315 189104501 -38420077 - L1MA7 LINE L1 -2271 4591 4410 198 0 0 0 chr3 189104501 189104523 -38420055 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 2281 212 30 11 chr3 189104523 189104878 -38419700 - L1MA7 LINE L1 -2452 4410 4040 9120 126 86 4 chr3 189104903 189106503 -38418075 - L1MA7 LINE L1 -4016 2847 1117 445 132 0 0 chr3 189106507 189106583 -38417995 - L1MA7 LINE L1 -6669 194 119 836 165 35 0 chr3 189106583 189106764 -38417814 + MER41A LTR ERV1 348 554 0 226 234 0 0 chr3 189106873 189106920 -38417658 - L2 LINE L2 -3 3269 3223 243 0 0 0 chr3 189106923 189106950 -38417628 + (TC)n Simple_repeat Simple_repeat 2 28 0 221 138 35 55 chr3 189106950 189107095 -38417483 + (TA)n Simple_repeat Simple_repeat 2 143 0 226 233 0 0 chr3 189107125 189107168 -38417410 + MER39 LTR ERV1 25 67 -640 2228 171 59 16 chr3 189107230 189107674 -38416904 + LTR29 LTR ERV1 160 622 0 26 30 0 0 chr3 189107852 189107885 -38416693 + AT_rich Low_complexity Low_complexity 1 33 0 243 281 0 0 chr3 189108308 189108365 -38416213 + MER63 DNA MER1_type 32 714 -348 1001 142 18 0 chr3 189108648 189108817 -38415761 - L1PB1 LINE L1 -1 6150 5979 12219 141 86 14 chr3 189108820 189111796 -38412782 - L1PBa LINE L1 -3043 3819 634 872 175 48 16 chr3 189111796 189111985 -38412593 - L1PBa LINE L1 -6663 200 6 2374 104 0 0 chr3 189112183 189112492 -38412086 + AluSg SINE Alu 1 309 -1 831 241 142 119 chr3 189112551 189113148 -38411430 - MER77 LTR ERV1 -19 586 98 334 306 75 7 chr3 189113452 189113601 -38410977 + MIR SINE MIR 5 161 -66 21 36 0 0 chr3 189113644 189113672 -38410906 + AT_rich Low_complexity Low_complexity 1 28 0 400 101 0 135 chr3 189113675 189113764 -38410814 - AluJ/FRAM SINE Alu -7 295 219 236 319 83 13 chr3 189113866 189114023 -38410555 - MIR SINE MIR -29 233 66 329 277 0 20 chr3 189114286 189114387 -38410191 - MLT1I LTR MaLR -2 407 309 2458 150 83 17 chr3 189114720 189115179 -38409399 + LTR29 LTR ERV1 132 620 -2 408 268 41 8 chr3 189115489 189115612 -38408966 + MER94 DNA DNA 8 134 0 25 51 0 0 chr3 189115627 189115666 -38408912 + AT_rich Low_complexity Low_complexity 1 39 0 211 250 125 0 chr3 189115731 189115787 -38408791 - L2 LINE L2 -5 3267 3205 22 0 0 0 chr3 189116030 189116052 -38408526 + AT_rich Low_complexity Low_complexity 1 22 0 248 200 37 15 chr3 189116585 189116694 -38407884 + MER34 LTR ERV1 449 530 -12 913 194 39 6 chr3 189116848 189117028 -38407550 + MLT1A1 LTR MaLR 180 365 0 1589 149 9 98 chr3 189118910 189119041 -38405537 + AluJb SINE Alu 3 144 -168 2186 119 0 3 chr3 189119041 189119353 -38405225 + AluSx SINE Alu 2 312 0 1589 149 9 98 chr3 189119353 189119549 -38405029 + AluJb SINE Alu 144 301 -11 332 218 142 89 chr3 189119600 189119864 -38404714 + MER39 LTR ERV1 31 438 -269 1312 246 74 43 chr3 189119864 189120489 -38404089 - LTR48B LTR ERV1 0 644 1 332 218 142 89 chr3 189120489 189120520 -38404058 + MER39 LTR ERV1 438 466 -241 265 202 60 60 chr3 189120527 189120649 -38403929 + MER34 LTR ERV1 8 154 -388 1057 192 26 93 chr3 189120656 189120992 -38403586 + MER39 LTR ERV1 176 619 -88 442 192 0 0 chr3 189120997 189121070 -38403508 + AluS SINE Alu 3 75 -228 628 219 0 7 chr3 189121070 189121207 -38403371 + AluJb SINE Alu 162 297 -15 312 247 14 0 chr3 189121217 189121290 -38403288 + MER39 LTR ERV1 614 687 -20 604 153 100 53 chr3 189121313 189121483 -38403095 + MER34 LTR ERV1 359 650 -57 1866 211 64 108 chr3 189121488 189122210 -38402368 - LTR8A LTR ERV1 -4 723 34 1132 160 59 23 chr3 189122231 189122450 -38402128 + MER101B LTR ERV1 3 229 -341 4244 210 64 3 chr3 189123154 189124055 -38400523 + L1PBa LINE L1 1 956 -5907 1664 121 12 4 chr3 189124052 189124308 -38400270 - THE1B-int LTR MaLR -1320 260 3 * 1512 174 53 36 chr3 189124313 189124669 -38399909 - THE1B LTR MaLR -2 362 1 4209 140 72 2 chr3 189124673 189125473 -38399105 + L1PBa LINE L1 1558 2413 -4450 3082 201 3 22 chr3 189125473 189126151 -38398427 + L1 LINE L1 3820 4484 -1662 185 161 0 0 chr3 189126434 189126465 -38398113 + L2 LINE L2 3275 3305 -8 538 361 35 9 chr3 189127670 189127900 -38396678 - MIR SINE MIR 0 262 27 23 0 0 0 chr3 189128083 189128106 -38396472 + AT_rich Low_complexity Low_complexity 1 23 0 1929 141 14 3 chr3 189128157 189128454 -38396124 + AluSx SINE Alu 1 300 -12 3042 110 64 90 chr3 189128608 189129218 -38395360 - LTR14B LTR ERVK 0 608 15 27 49 0 0 chr3 189129795 189129836 -38394742 + AT_rich Low_complexity Low_complexity 1 41 0 454 268 22 120 chr3 189130303 189130486 -38394092 - L2 LINE L2 0 3272 3108 2283 83 3 0 chr3 189131021 189131321 -38393257 - AluSp SINE Alu -12 301 1 206 188 38 25 chr3 189131737 189131817 -38392761 + (TATAA)n Simple_repeat Simple_repeat 4 84 0 288 250 19 0 chr3 189132078 189132182 -38392396 + (TA)n Simple_repeat Simple_repeat 1 106 0 233 221 166 117 chr3 189132227 189132372 -38392206 - HAL1 LINE L1 -658 1849 1698 361 179 0 52 chr3 189132384 189132518 -38392060 + (TA)n Simple_repeat Simple_repeat 2 128 0 347 263 122 76 chr3 189132637 189132899 -38391679 - HAL1 LINE L1 -603 1904 1631 384 269 211 37 chr3 189132927 189133254 -38391324 - HAL1 LINE L1 -964 1543 1160 216 0 0 0 chr3 189133509 189133533 -38391045 + (TA)n Simple_repeat Simple_repeat 2 25 0 509 277 105 87 chr3 189133555 189133887 -38390691 + MLT2F LTR ERVL 250 587 -76 742 332 59 12 chr3 189133893 189134236 -38390342 + MER45C DNA AcHobo 1 417 -536 714 254 148 11 chr3 189134250 189134439 -38390139 + MER45C DNA AcHobo 738 952 -1 2119 133 0 19 chr3 189134491 189134807 -38389771 + AluSx SINE Alu 1 310 -2 325 319 62 14 chr3 189134823 189135111 -38389467 - L1M4 LINE L1 -2567 3579 3278 488 200 155 1 chr3 189135351 189135477 -38389101 - L1ME2 LINE L1 -6 6160 6019 4035 143 38 36 chr3 189135477 189136219 -38388359 + MER4E LTR ERV1 37 779 0 4867 189 43 4 chr3 189136223 189138021 -38386557 + L1PA15 LINE L1 4270 6140 -25 55 92 0 0 chr3 189138033 189138186 -38386392 + AT_rich Low_complexity Low_complexity 1 153 0 309 319 104 0 chr3 189138466 189138601 -38385977 + MER20B DNA MER1_type 1 149 -634 314 23 0 23 chr3 189138902 189138946 -38385632 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 854 218 0 0 chr3 189138994 189139150 -38385428 + AluJb SINE Alu 134 289 -23 2222 78 0 4 chr3 189139166 189139485 -38385093 + AluY SINE Alu 2 319 0 2449 30 17 3 chr3 189139523 189139822 -38384756 + AluY SINE Alu 1 303 -8 21 0 0 0 chr3 189140214 189140235 -38384343 + AT_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3 189140860 189140892 -38383686 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chr3 189140912 189140945 -38383633 + AT_rich Low_complexity Low_complexity 1 33 0 192 354 62 18 chr3 189141347 189141460 -38383118 + MIR SINE MIR 6 123 -139 2075 115 4 0 chr3 189141666 189141989 -38382589 - AluSx SINE Alu 0 326 3 257 382 0 0 chr3 189142020 189142088 -38382490 + MIR SINE MIR 47 114 -148 26 50 0 0 chr3 189143364 189143404 -38381174 + AT_rich Low_complexity Low_complexity 1 40 0 28 0 0 0 chr3 189143759 189143787 -38380791 + AT_rich Low_complexity Low_complexity 1 28 0 6142 226 18 42 chr3 189143969 189145678 -38378900 + L1M1 LINE L1 18 2029 -5536 2133 109 10 0 chr3 189145678 189145971 -38378607 - AluSp SINE Alu -15 298 3 6142 226 18 42 chr3 189145971 189146390 -38378188 + L1M1 LINE L1 2029 2456 -5109 567 208 8 8 chr3 189146493 189146618 -38377960 - AluSq/x SINE Alu -188 125 1 190 370 64 36 chr3 189146621 189146902 -38377676 + L2 LINE L2 2196 2484 -830 212 323 52 21 chr3 189147177 189147273 -38377305 + MIR SINE MIR 8 106 -156 212 365 111 16 chr3 189147470 189147596 -38376982 + L2 LINE L2 2898 3035 -237 676 235 115 25 chr3 189148314 189148602 -38375976 - MER52A LTR ERV1 -137 894 633 2340 134 22 3 chr3 189148602 189148959 -38375619 + THE1B LTR MaLR 1 364 0 676 235 115 25 chr3 189148959 189148982 -38375596 - MER52A LTR ERV1 -398 633 275 767 284 8 0 chr3 189149010 189149203 -38375375 - LTR28 LTR ERV1 -554 724 1 240 336 31 16 chr3 189149511 189149639 -38374939 + L1ME LINE L1 5534 5663 -458 1130 224 25 6 chr3 189149819 189150136 -38374442 - MER33 DNA MER1_type 0 324 2 220 255 0 0 chr3 189150653 189150704 -38373874 + L2 LINE L2 3256 3306 -7 25 31 0 0 chr3 189150984 189151016 -38373562 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr3 189151326 189151350 -38373228 + AT_rich Low_complexity Low_complexity 1 24 0 59 65 0 0 chr3 189152841 189152949 -38371629 + AT_rich Low_complexity Low_complexity 1 108 0 186 113 93 0 chr3 189152966 189153063 -38371515 + (TA)n Simple_repeat Simple_repeat 2 107 0 23 68 0 0 chr3 189153073 189153117 -38371461 + AT_rich Low_complexity Low_complexity 1 44 0 204 153 59 24 chr3 189153120 189153205 -38371373 + (TTATA)n Simple_repeat Simple_repeat 1 88 0 1204 327 124 13 chr3 189153257 189154298 -38370280 + L2 LINE L2 2128 3286 -27 216 111 0 0 chr3 189154320 189154356 -38370222 + (GA)n Simple_repeat Simple_repeat 1 36 0 2010 116 37 10 chr3 189156288 189156608 -38367970 - AluSx SINE Alu 0 328 1 24 96 0 0 chr3 189158774 189158847 -38365731 + AT_rich Low_complexity Low_complexity 1 73 0 1023 239 56 14 chr3 189159106 189159461 -38365117 + MER114 LTR ERV 44 413 -235 1353 195 7 55 chr3 189159508 189159816 -38364762 + AluJo SINE Alu 1 293 -9 1391 207 68 58 chr3 189159900 189160258 -38364320 - MLT1A1 LTR MaLR -1 395 1 1022 133 0 12 chr3 189160360 189160533 -38364045 - L1PA13 LINE L1 -4 6159 5989 2738 106 0 0 chr3 189160533 189160920 -38363658 + L1P4 LINE L1 5419 5805 -363 198 0 0 0 chr3 189161058 189161080 -38363498 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 559 221 0 0 chr3 189162265 189162392 -38362186 - L1M1 LINE L1 -809 5494 5368 244 333 20 20 chr3 189162394 189162496 -38362082 - L2 LINE L2 -1001 2313 2212 1717 211 83 53 chr3 189162653 189163123 -38361455 - MLT1D LTR MaLR 0 505 22 875 175 50 0 chr3 189163256 189163416 -38361162 - FAM SINE Alu -7 168 1 1068 191 122 0 chr3 189163444 189163732 -38360846 + MER33 DNA MER1_type 1 323 -1 286 344 11 0 chr3 189164462 189164555 -38360023 - MIR SINE MIR -120 142 49 2413 60 0 25 chr3 189165507 189165853 -38358725 - AluY SINE Alu 0 338 1 1597 205 20 45 chr3 189166524 189166880 -38357698 - MER7A DNA MER2_type 0 346 2 4924 154 67 36 chr3 189167040 189167813 -38356765 + L1M1 LINE L1 2369 3189 -4376 1938 155 0 10 chr3 189167813 189168116 -38356462 + AluSx SINE Alu 1 300 -12 4924 154 67 36 chr3 189168116 189168470 -38356108 + L1M1 LINE L1 3189 3531 -4034 2656 40 4 0 chr3 189169014 189169395 -38355183 - L1PA5 LINE L1 -720 5434 5053 5635 60 11 0 chr3 189169396 189170113 -38354465 + L1PA5 LINE L1 5430 6154 0 26 30 0 0 chr3 189170838 189170871 -38353707 + AT_rich Low_complexity Low_complexity 1 33 0 24 77 0 0 chr3 189170993 189171045 -38353533 + AT_rich Low_complexity Low_complexity 1 52 0 2019 58 4 0 chr3 189171351 189171609 -38352969 + L1PA5 LINE L1 5891 6149 -5 198 0 0 0 chr3 189171648 189171670 -38352908 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 813 186 25 25 chr3 189171672 189171833 -38352745 - AluJo SINE Alu -32 280 120 295 320 122 0 chr3 189173601 189173748 -38350830 - MIR SINE MIR -8 254 90 1041 236 107 0 chr3 189173849 189174091 -38350487 + AluJo SINE Alu 13 280 -32 254 183 133 0 chr3 189174348 189174408 -38350170 - MER57A LTR ERV1 -331 72 5 252 232 48 40 chr3 189174469 189174594 -38349984 + L1MC1 LINE L1 3111 3236 -2910 363 23 0 0 chr3 189174609 189174653 -38349925 + (GA)n Simple_repeat Simple_repeat 1 44 0 382 317 27 11 chr3 189174738 189174921 -38349657 + L1MC1 LINE L1 3496 3681 -2465 2547 160 6 36 chr3 189174928 189175396 -38349182 + MER34B LTR ERV1 3 456 -109 333 217 11 33 chr3 189175402 189175494 -38349084 - L1MC4 LINE L1 -1339 6703 6614 268 127 36 0 chr3 189175496 189175551 -38349027 + (TA)n Simple_repeat Simple_repeat 2 58 0 287 69 155 0 chr3 189175555 189175613 -38348965 + MER34B LTR ERV1 432 498 -67 2612 212 74 8 chr3 189175614 189176259 -38348319 + L1MCb LINE L1 509 1196 -4849 634 229 72 30 chr3 189176244 189176480 -38348098 + L1MC1 LINE L1 4978 5223 -923 * 513 176 94 94 chr3 189176494 189176750 -38347828 + L1MC1 LINE L1 5265 5520 -824 342 299 59 9 chr3 189176748 189176969 -38347609 + L1MC1 LINE L1 5943 6104 -229 * 11068 188 16 13 chr3 189177157 189179682 -38344896 - L1P4 LINE L1 -602 5559 3030 2256 135 28 22 chr3 189179682 189180044 -38344534 - THE1B LTR MaLR 0 364 1 11068 188 16 13 chr3 189180044 189180434 -38344144 - L1P4 LINE L1 -3131 3030 2643 7379 212 20 20 chr3 189180812 189182732 -38341846 + L1PA13 LINE L1 897 2823 -3974 406 200 25 50 chr3 189182884 189183004 -38341574 + MER31-int LTR ERV1 3630 3746 -1190 8665 62 1 1 chr3 189183530 189185192 -38339386 + L1PA5 LINE L1 4328 5988 -166 3433 172 31 22 chr3 189185331 189185919 -38338659 - L1MC1 LINE L1 -385 5948 5354 1894 106 0 18 chr3 189185919 189186192 -38338386 - AluSg SINE Alu -10 300 33 3433 172 31 22 chr3 189186192 189186375 -38338203 - L1MC1 LINE L1 -979 5354 5174 22 88 0 0 chr3 189186932 189186989 -38337589 + AT_rich Low_complexity Low_complexity 1 57 0 22 0 0 0 chr3 189187644 189187666 -38336912 + AT_rich Low_complexity Low_complexity 1 22 0 254 222 0 32 chr3 189187699 189187762 -38336816 + (TTG)n Simple_repeat Simple_repeat 2 62 0 1912 105 0 16 chr3 189188238 189188495 -38336083 + AluY SINE Alu 1 253 -58 232 184 0 66 chr3 189188517 189188593 -38335985 + L1MC4 LINE L1 6632 6702 -1340 224 0 68 51 chr3 189188594 189188653 -38335925 + (TA)n Simple_repeat Simple_repeat 2 61 0 1116 100 50 0 chr3 189188826 189188932 -38335646 - L1PB1 LINE L1 -255 5896 5776 312 120 0 0 chr3 189188932 189188982 -38335596 + (CA)n Simple_repeat Simple_repeat 2 51 0 1116 100 50 0 chr3 189188982 189189055 -38335523 - L1PB1 LINE L1 -375 5776 5708 254 267 33 40 chr3 189189321 189189471 -38335107 + MER31-int LTR ERV1 2646 2794 -2142 22 80 0 0 chr3 189239818 189239868 -38284710 + GC_rich Low_complexity Low_complexity 1 50 0 30 69 0 0 chr3 189240359 189240417 -38284161 + AT_rich Low_complexity Low_complexity 1 58 0 1773 152 54 38 chr3 189241671 189242040 -38282538 - THE1C LTR MaLR 0 375 1 22 0 0 0 chr3 189242785 189242807 -38281771 + AT_rich Low_complexity Low_complexity 1 22 0 613 144 114 8 chr3 189242865 189242997 -38281581 - L1MA4A LINE L1 -4 6299 6154 642 299 57 0 chr3 189243209 189243420 -38281158 + MER58A DNA MER1_type 2 224 0 274 271 14 0 chr3 189244051 189244121 -38280457 + (CATATA)n Simple_repeat Simple_repeat 1 71 0 281 293 151 9 chr3 189244721 189244827 -38279751 - L2 LINE L2 0 3313 3193 44 35 0 0 chr3 189245038 189245096 -38279482 + AT_rich Low_complexity Low_complexity 1 58 0 396 324 22 7 chr3 189245181 189245317 -38279261 - MLT1K LTR MaLR -253 335 198 1609 196 3 0 chr3 189245427 189245712 -38278866 + AluSg SINE Alu 1 286 -24 364 314 10 0 chr3 189246060 189246162 -38278416 - L2 LINE L2 -1 3312 3210 5318 39 2 0 chr3 189246170 189246807 -38277771 - L1PA4 LINE L1 0 6155 5518 2973 58 3 0 chr3 189246807 189247189 -38277389 + L1P LINE L1 4786 5168 -978 342 0 0 0 chr3 189249244 189249282 -38275296 + (TG)n Simple_repeat Simple_repeat 1 38 0 222 37 0 0 chr3 189249281 189249308 -38275270 + (GA)n Simple_repeat Simple_repeat 1 27 0 * 562 214 320 0 chr3 189250152 189250330 -38274248 + MIR SINE MIR 7 241 -21 434 228 147 15 chr3 189250912 189251048 -38273530 + L2 LINE L2 3160 3313 0 211 349 169 18 chr3 189253001 189253167 -38271411 + L2 LINE L2 2880 3070 -243 1523 195 6 25 chr3 189253454 189253772 -38270806 - AluJb SINE Alu 0 312 1 1076 246 85 37 chr3 189253799 189254209 -38270369 + MLT1L LTR MaLR 184 613 -2 384 202 60 24 chr3 189254753 189254837 -38269741 + MLT1E1 LTR MaLR 1 87 -567 949 273 20 4 chr3 189254942 189255195 -38269383 + MLT1E3 LTR MaLR 368 624 0 186 279 0 87 chr3 189255264 189255368 -38269210 + L2 LINE L2 2994 3088 -184 1637 233 44 10 chr3 189256329 189256737 -38267841 + MER95 LTR ERV 10 431 0 931 179 0 0 chr3 189257115 189257271 -38267307 - Tigger7 DNA MER2_type 0 2587 2432 542 146 0 0 chr3 189257388 189257470 -38267108 + MER95 LTR ERV 10 91 -340 257 162 45 99 chr3 189257523 189257634 -38266944 - Tigger7 DNA MER2_type -148 2343 2239 808 189 36 100 chr3 189257640 189257889 -38266689 - MER57A LTR ERV1 -5 398 166 2040 240 75 55 chr3 189257999 189259765 -38264813 - L1MCb LINE L1 -4278 2467 455 1404 185 60 31 chr3 189259826 189260177 -38264401 - L1MB1 LINE L1 -12 6156 5796 1187 273 70 5 chr3 189260284 189260668 -38263910 - L1MCb LINE L1 -5932 632 224 250 324 22 16 chr3 189260687 189260943 -38263635 + L1MEc LINE L1 1370 1618 -4924 21 0 0 0 chr3 189261009 189261030 -38263548 + AT_rich Low_complexity Low_complexity 1 21 0 17997 46 57 3 chr3 189261258 189263617 -38260961 - L1P LINE L1 -3100 3046 560 295 217 29 0 chr3 189264177 189264246 -38260332 + GA-rich Low_complexity Low_complexity 3 73 0 1848 114 23 58 chr3 189264563 189264871 -38259707 - AluSg SINE Alu -13 297 1 24 32 0 0 chr3 189264918 189264949 -38259629 + AT_rich Low_complexity Low_complexity 1 31 0 783 290 94 82 chr3 189265037 189265548 -38259030 + MLT1F LTR MaLR 4 520 -22 948 187 8 38 chr3 189265625 189265892 -38258686 - L1PA2 LINE L1 -15 6140 5882 188 286 33 22 chr3 189266112 189266203 -38258375 + MIR SINE MIR 101 192 -70 30 0 0 0 chr3 189266338 189266368 -38258210 + AT_rich Low_complexity Low_complexity 1 30 0 9023 52 0 5 chr3 189266693 189267856 -38256722 - L1P LINE L1 -4101 2045 889 26756 35 1 1 chr3 189268248 189272286 -38252292 + L1PA3 LINE L1 2109 6146 -9 31 0 0 0 chr3 189272286 189272317 -38252261 + AT_rich Low_complexity Low_complexity 1 31 0 3008 197 37 37 chr3 189272728 189273438 -38251140 - MER67C LTR ERV1 0 710 1 26 30 0 0 chr3 189275374 189275407 -38249171 + AT_rich Low_complexity Low_complexity 1 33 0 802 233 51 0 chr3 189275736 189275912 -38248666 - MER5A DNA MER1_type -2 187 3 22 56 0 0 chr3 189276324 189276360 -38248218 + AT_rich Low_complexity Low_complexity 1 36 0 321 254 30 0 chr3 189276739 189276806 -38247772 - MLT2F LTR ERVL -415 248 180 1442 271 42 84 chr3 189276830 189277872 -38246706 + L2 LINE L2 2304 3295 -18 223 318 30 0 chr3 189278834 189278900 -38245678 + MIR SINE MIR 89 156 -106 237 200 100 115 chr3 189279778 189279844 -38244734 - MLT1G1 LTR MaLR -467 128 63 1377 209 19 16 chr3 189279844 189280123 -38244455 + AluJo SINE Alu 1 283 -29 708 74 0 0 chr3 189280123 189280218 -38244360 + (GGAA)n Simple_repeat Simple_repeat 4 98 0 1377 209 19 16 chr3 189280218 189280245 -38244333 + AluJo SINE Alu 283 308 -4 237 200 100 115 chr3 189280245 189280308 -38244270 - MLT1G1 LTR MaLR -532 63 1 366 346 6 6 chr3 189281257 189281419 -38243159 - MLT1G1-int LTR MaLR -793 578 417 404 297 29 7 chr3 189281525 189281663 -38242915 - MLT1G1-int LTR MaLR -1229 142 2 528 260 264 47 chr3 189281670 189281966 -38242612 - MLT1G1 LTR MaLR -6 589 230 496 259 38 8 chr3 189282021 189282152 -38242426 - MLT1G1 LTR MaLR -456 139 5 687 349 52 9 chr3 189282155 189282499 -38242079 - L2 LINE L2 -550 2764 2406 4354 38 4 0 chr3 189282627 189283158 -38241420 + L1PA3 LINE L1 5623 6155 0 351 392 31 29 chr3 189283180 189283601 -38240977 + L1ME LINE L1 357 778 -5618 332 253 56 31 chr3 189284126 189284315 -38240263 + L1ME LINE L1 1142 1371 -5073 2163 123 3 0 chr3 189285117 189285426 -38239152 + AluSx SINE Alu 1 310 -2 390 264 52 44 chr3 189285618 189285868 -38238710 - L1MEc LINE L1 -1439 4776 4525 28 61 0 0 chr3 189285911 189285960 -38238618 + AT_rich Low_complexity Low_complexity 1 49 0 282 160 0 0 chr3 189286543 189286593 -38237985 + (TA)n Simple_repeat Simple_repeat 2 51 0 3970 190 75 7 chr3 189286596 189287510 -38237068 + L1MC2 LINE L1 5353 6329 -15 2454 88 3 3 chr3 189287572 189287915 -38236663 + L1P LINE L1 3 345 -5801 252 305 49 8 chr3 189288090 189288259 -38236319 + L1ME LINE L1 4913 5091 -1055 892 47 0 0 chr3 189288259 189288399 -38236179 - AluY SINE Alu 0 320 181 399 240 103 33 chr3 189288454 189288730 -38235848 + L1ME LINE L1 5310 5607 -563 800 174 0 0 chr3 189288739 189288871 -38235707 - MLT1A1 LTR MaLR -1 364 233 338 169 0 0 chr3 189288870 189288929 -38235649 - MLT1A1 LTR MaLR -306 59 1 * 319 286 113 57 chr3 189289271 189289932 -38234646 - L1MEc LINE L1 -2396 3819 3106 1414 174 43 33 chr3 189289932 189290231 -38234347 + AluJb SINE Alu 1 302 0 319 286 113 57 chr3 189290231 189290353 -38234225 - L1MEc LINE L1 -3109 3106 2992 249 306 60 38 chr3 189290393 189290576 -38234002 - L1MEc LINE L1 -4492 1904 1718 321 272 19 10 chr3 189290706 189290809 -38233769 - MER57A LTR ERV1 -207 196 93 209 291 12 23 chr3 189290963 189291049 -38233529 + (TATATG)n Simple_repeat Simple_repeat 4 88 0 512 336 84 31 chr3 189291080 189291636 -38232942 + L1 LINE L1 4067 4652 -1494 568 224 112 53 chr3 189292055 189292430 -38232148 + L1MEc LINE L1 1878 2274 -4122 390 242 33 39 chr3 189293171 189293324 -38231254 + L1MC5 LINE L1 7339 7490 -471 30 27 0 0 chr3 189293340 189293377 -38231201 + AT_rich Low_complexity Low_complexity 1 37 0 772 191 31 19 chr3 189293434 189293596 -38230982 - AluJb SINE Alu -85 227 64 21 0 0 0 chr3 189293778 189293799 -38230779 + AT_rich Low_complexity Low_complexity 1 21 0 22 39 0 39 chr3 189294227 189294246 -38230332 + AT_rich Low_complexity Low_complexity 1 19 -30 601 165 0 41 chr3 189294246 189294367 -38230211 - FLAM_C SINE Alu -16 117 2 22 39 0 39 chr3 189294367 189294398 -38230180 + AT_rich Low_complexity Low_complexity 19 49 0 2034 136 3 10 chr3 189294435 189294743 -38229835 - AluSx SINE Alu -6 306 1 21 57 0 0 chr3 189294803 189294838 -38229740 + AT_rich Low_complexity Low_complexity 1 35 0 341 242 68 49 chr3 189294858 189295122 -38229456 - L1M4 LINE L1 -3624 2522 2254 192 40 0 0 chr3 189295180 189295205 -38229373 + (A)n Simple_repeat Simple_repeat 1 25 0 721 204 14 0 chr3 189295213 189295355 -38229223 + AluJo SINE Alu 7 150 -162 824 163 39 6 chr3 189295928 189296106 -38228472 - L1MA3 LINE L1 -5 6300 6117 458 83 0 0 chr3 189296110 189296182 -38228396 - L1M1 LINE L1 -5242 2323 2252 * 1324 100 61 4 chr3 189296180 189296410 -38228168 + L1MA3 LINE L1 5929 6171 -134 305 91 30 61 chr3 189296413 189296479 -38228099 + L1MA3 LINE L1 6242 6305 0 4848 167 35 29 chr3 189296488 189296986 -38227592 + Tigger1 DNA MER2_type 1465 1973 -445 1444 206 0 36 chr3 189296986 189297287 -38227291 + AluJo SINE Alu 1 290 -12 4848 167 35 29 chr3 189297287 189297735 -38226843 + Tigger1 DNA MER2_type 1973 2417 -1 1607 142 50 0 chr3 189298784 189299044 -38225534 + L1PA15 LINE L1 5886 6158 -7 25 31 0 0 chr3 189299466 189299498 -38225080 + AT_rich Low_complexity Low_complexity 1 32 0 1202 187 3 5 chr3 189300402 189300725 -38223853 + MLT1B LTR MaLR 1 390 0 191 298 260 0 chr3 189301570 189301674 -38222904 + MIR SINE MIR 126 256 -6 1901 189 66 20 chr3 189301775 189302215 -38222363 - MLT1C LTR MaLR 0 467 8 3940 220 64 18 chr3 189302364 189303276 -38221302 - MLT1C-int LTR MaLR -417 954 1 1665 228 66 14 chr3 189303276 189303715 -38220863 - MLT1C LTR MaLR 0 467 6 6304 72 67 0 chr3 189305312 189306153 -38218425 - MER11D LTR ERVK 0 897 1 6144 47 4 7 chr3 189306153 189306926 -38217652 - HERVK11D LTR ERVK 0 7752 6982 286 374 67 39 chr3 189307093 189307347 -38217231 + L2 LINE L2 246 506 -2808 384 242 53 23 chr3 189307403 189307535 -38217043 + MIR SINE MIR 86 221 -41 269 336 53 53 chr3 189309020 189309285 -38215293 + MER110-int LTR ERV1 4144 4408 -239 197 298 0 0 chr3 189310711 189310758 -38213820 + MIR3 SINE MIR 112 158 -50 5716 134 28 35 chr3 189311057 189312128 -38212450 - HERVL LTR ERVL -4525 1129 66 2191 102 3 3 chr3 189313412 189313717 -38210861 + AluSx SINE Alu 1 305 -7 333 0 0 0 chr3 189314139 189314176 -38210402 + (CA)n Simple_repeat Simple_repeat 2 38 0 370 207 28 21 chr3 189314580 189314725 -38209853 + A-rich Low_complexity Low_complexity 2 147 0 1006 139 10 30 chr3 189314842 189315043 -38209535 + HERVL LTR ERVL 1443 1639 -4015 2685 65 8 6 chr3 189315057 189315411 -38209167 - MLT2A1 LTR ERVL -89 355 1 1137 93 25 0 chr3 189316024 189316185 -38208393 - L1MA1 LINE L1 -4 6298 6134 241 108 0 0 chr3 189316186 189316223 -38208355 + L1 LINE L1 5164 5200 -946 357 65 0 0 chr3 189316369 189316415 -38208163 + MER11D LTR ERVK 1 46 -851 3633 96 5 36 chr3 189316415 189317033 -38207545 + HERVK11D LTR ERVK 6446 7044 -708 2092 169 83 10 chr3 189320162 189320559 -38204019 + MSTB LTR MaLR 1 426 0 264 77 0 0 chr3 189321730 189321769 -38202809 + (TG)n Simple_repeat Simple_repeat 2 40 0 284 281 146 35 chr3 189322573 189322744 -38201834 - MIR SINE MIR -37 225 36 200 182 0 0 chr3 189322770 189322803 -38201775 + (CAA)n Simple_repeat Simple_repeat 1 33 0 355 270 78 88 chr3 189323919 189324033 -38200545 + MLT1H LTR MaLR 91 205 -344 2316 97 0 6 chr3 189324033 189324344 -38200234 + AluSq SINE Alu 1 309 -4 355 270 78 88 chr3 189324344 189324548 -38200030 + MLT1H LTR MaLR 205 406 -143 1501 262 35 21 chr3 189324669 189325185 -38199393 - L1ME LINE L1 -355 6045 5523 379 290 86 54 chr3 189325155 189325887 -38198691 - L1ME LINE L1 -4527 2036 1082 * 492 184 31 0 chr3 189325898 189325996 -38198582 - LTR52 LTR ERVL -153 268 168 300 208 13 52 chr3 189326273 189326350 -38198228 - MLT1J LTR MaLR -43 468 395 335 290 125 34 chr3 189326414 189326590 -38197988 - MLT1J LTR MaLR -249 262 71 2017 134 0 0 chr3 189326873 189327171 -38197407 - AluSx SINE Alu -14 298 1 1232 121 14 29 chr3 189327229 189327436 -38197142 - THE1C LTR MaLR -2 373 170 236 299 0 11 chr3 189327537 189327624 -38196954 + (TATATG)n Simple_repeat Simple_repeat 2 87 0 1116 208 173 66 chr3 189329701 189330157 -38194421 + MLT1D LTR MaLR 1 505 0 255 241 161 45 chr3 189330660 189330772 -38193806 + L2 LINE L2 3186 3310 -3 2373 81 0 0 chr3 189331170 189331467 -38193111 + AluY SINE Alu 1 297 -14 312 91 0 0 chr3 189332206 189332250 -38192328 + (T)n Simple_repeat Simple_repeat 1 44 0 216 0 0 0 chr3 189332299 189332323 -38192255 + (A)n Simple_repeat Simple_repeat 1 24 0 346 248 0 48 chr3 189332545 189332670 -38191908 + GA-rich Low_complexity Low_complexity 2 120 0 312 120 0 0 chr3 189332967 189333017 -38191561 + (TG)n Simple_repeat Simple_repeat 2 51 0 24 0 0 0 chr3 189333245 189333269 -38191309 + AT_rich Low_complexity Low_complexity 1 24 0 292 304 33 0 chr3 189333891 189333983 -38190595 - MIR3 SINE MIR -7 201 107 305 347 137 11 chr3 189334230 189334420 -38190158 + MIR SINE MIR 49 262 0 271 256 23 23 chr3 189334881 189334967 -38189611 + MIR SINE MIR 118 203 -59 2320 92 3 3 chr3 189335231 189335535 -38189043 + AluSp SINE Alu 1 304 -9 197 329 13 13 chr3 189335810 189335889 -38188689 - L3 LINE CR1 -2 1575 1497 240 361 62 36 chr3 189336083 189336277 -38188301 - L3 LINE CR1 -335 1242 1044 2725 208 28 42 chr3 189336289 189336570 -38188008 + Charlie1a DNA MER1_type 14 297 -2464 2283 99 3 3 chr3 189336570 189336872 -38187706 - AluSp SINE Alu -11 302 1 2725 208 28 42 chr3 189336872 189337337 -38187241 + Charlie1a DNA MER1_type 297 750 -705 1269 175 4 56 chr3 189337439 189337673 -38186905 - AluJb SINE Alu -64 248 27 276 221 15 0 chr3 189337999 189338067 -38186511 + MER116 DNA Mariner 8 76 -4 784 242 16 0 chr3 189338340 189338526 -38186052 - MER58B DNA MER1_type 0 341 153 194 91 30 0 chr3 189338608 189338641 -38185937 + (TA)n Simple_repeat Simple_repeat 1 34 0 431 206 106 62 chr3 189339309 189339469 -38185109 + MLT2D LTR ERVL 269 414 0 1958 91 53 4 chr3 189339489 189339754 -38184824 - AluSx SINE Alu -24 288 11 251 327 79 36 chr3 189339766 189339931 -38184647 - MIR SINE MIR -71 191 20 2257 106 3 3 chr3 189340360 189340672 -38183906 + AluSp SINE Alu 1 312 -1 667 80 0 0 chr3 189340822 189340910 -38183668 - MER4A LTR ERV1 0 664 577 24 77 0 0 chr3 189341012 189341064 -38183514 + AT_rich Low_complexity Low_complexity 1 52 0 522 106 0 12 chr3 189343827 189343912 -38180666 - MSTA LTR MaLR -344 84 1 260 246 0 18 chr3 189344049 189344106 -38180472 - L2 LINE L2 -17 3296 3241 28 0 0 0 chr3 189344213 189344241 -38180337 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 189345894 189345915 -38178663 + AT_rich Low_complexity Low_complexity 1 21 0 221 134 45 30 chr3 189346038 189346105 -38178473 + (TA)n Simple_repeat Simple_repeat 1 68 0 611 203 71 44 chr3 189346283 189346465 -38178113 + MER20 DNA MER1_type 29 215 -4 2475 79 0 0 chr3 189347303 189347607 -38176971 + AluY SINE Alu 1 304 -7 197 360 158 0 chr3 189348101 189348240 -38176338 + MIR3 SINE MIR 47 207 -1 2485 66 10 0 chr3 189348368 189348669 -38175909 + AluY SINE Alu 1 304 -7 344 289 47 27 chr3 189348674 189348823 -38175755 + L1ME4a LINE L1 5676 5827 -294 1823 48 13 17 chr3 189349095 189349325 -38175253 + AluY SINE Alu 69 297 -14 2164 105 3 13 chr3 189349710 189350023 -38174555 + AluSg SINE Alu 1 310 0 347 376 68 31 chr3 189350362 189350524 -38174054 + MER91A DNA MER1_type 1 168 -28 1927 161 9 0 chr3 189350581 189350986 -38173592 - MLT1A1 LTR MaLR 0 365 1 4390 220 113 22 chr3 189350987 189352176 -38172402 - MLT1A1-int LTR MaLR 0 1735 439 1123 83 7 0 chr3 189352279 189352423 -38172155 + AluSp/q SINE Alu 156 300 -13 23 33 0 0 chr3 189352443 189352473 -38172105 + AT_rich Low_complexity Low_complexity 1 30 0 232 209 17 43 chr3 189352527 189352642 -38171936 + L1MEc LINE L1 2155 2266 -4130 569 236 41 63 chr3 189352692 189352963 -38171615 + L1MEc LINE L1 2383 2647 -3568 519 198 0 0 chr3 189353039 189353130 -38171448 - MLT1E LTR MaLR -444 149 59 473 355 27 77 chr3 189353177 189353515 -38171063 - L2 LINE L2 -2 3270 2950 231 296 13 125 chr3 189353683 189353835 -38170743 + L2 LINE L2 3137 3271 -1 1173 298 139 25 chr3 189354169 189354780 -38169798 + L2 LINE L2 1576 2256 -1058 325 278 11 0 chr3 189354827 189354917 -38169661 + L2 LINE L2 2422 2512 -802 460 285 39 46 chr3 189354919 189355085 -38169493 + L1M4 LINE L1 4568 4733 -1413 1923 175 46 39 chr3 189355085 189355458 -38169120 + MLT2D LTR ERVL 1 379 -35 351 0 0 0 chr3 189355458 189355497 -38169081 + (CA)n Simple_repeat Simple_repeat 2 40 0 1923 175 46 39 chr3 189355497 189355534 -38169044 + MLT2D LTR ERVL 379 414 0 460 285 39 46 chr3 189355534 189355672 -38168906 + L1M4 LINE L1 4733 4870 -1276 296 300 100 0 chr3 189356240 189356340 -38168238 - MIR SINE MIR -125 137 28 345 335 21 32 chr3 189356616 189356804 -38167774 - MER5A DNA MER1_type -1 188 3 3326 212 72 4 chr3 189358110 189359219 -38165359 - L1 LINE L1 -3757 3091 1906 438 325 12 56 chr3 189359221 189359470 -38165108 - L1 LINE L1 -5885 964 727 699 309 0 5 chr3 189359872 189360079 -38164499 - L1 LINE L1 -6422 427 222 2095 100 13 0 chr3 189360180 189360489 -38164089 + pTR5 LTR ERV1 67 379 -2059 1741 170 31 0 chr3 189360489 189360813 -38163765 - THE1B LTR MaLR -30 334 1 369 276 92 40 chr3 189360895 189360981 -38163597 + MIR SINE MIR 103 202 -60 2220 107 3 3 chr3 189360981 189361281 -38163297 + AluSc SINE Alu 1 300 -9 369 276 92 40 chr3 189361281 189361346 -38163232 + MIR SINE MIR 202 262 0 1965 112 4 0 chr3 189362033 189362302 -38162276 - AluSx SINE Alu -4 308 39 2280 98 0 0 chr3 189362468 189362765 -38161813 + AluY SINE Alu 1 297 -14 192 343 116 34 chr3 189363270 189363416 -38161162 + MIR3 SINE MIR 28 185 -23 538 257 121 18 chr3 189364701 189365090 -38159488 + L1 LINE L1 2132 2560 -3586 589 246 0 8 chr3 189365116 189365238 -38159340 - MER20 DNA MER1_type -50 169 49 199 182 45 11 chr3 189365352 189365440 -38159138 + (TA)n Simple_repeat Simple_repeat 1 91 0 366 182 58 0 chr3 189365462 189365616 -38158962 + (TA)n Simple_repeat Simple_repeat 2 164 0 731 261 58 11 chr3 189365647 189366027 -38158551 + L1 LINE L1 2612 3009 -3137 966 200 72 107 chr3 189366112 189366487 -38158091 + MER57A LTR ERV1 42 403 0 308 287 127 4 chr3 189366520 189366795 -38157783 + L1 LINE L1 3125 3433 -2713 44 101 0 0 chr3 189366798 189366947 -38157631 + AT_rich Low_complexity Low_complexity 1 149 0 1033 253 89 25 chr3 189367207 189367602 -38156976 + L1ME3A LINE L1 5739 6158 -12 532 171 21 43 chr3 189367816 189367956 -38156622 + L1MD2 LINE L1 5905 6041 -318 1044 86 0 56 chr3 189367957 189368119 -38156459 + AluSg/x SINE Alu 157 309 -3 1423 159 12 92 chr3 189368119 189368465 -38156113 + L1MD2 LINE L1 6034 6351 -8 227 338 0 12 chr3 189369090 189369170 -38155408 + L2 LINE L2 3228 3306 -7 537 294 65 22 chr3 189369241 189369425 -38155153 - MIR SINE MIR -12 250 59 1917 187 13 70 chr3 189369603 189369734 -38154844 + L1 LINE L1 3630 3767 -2379 2180 108 0 3 chr3 189369734 189370029 -38154549 + AluSx SINE Alu 18 311 -1 1917 187 13 70 chr3 189370029 189370452 -38154126 + L1 LINE L1 3767 4152 -1994 1321 145 0 26 chr3 189370461 189370688 -38153890 + L1PA13 LINE L1 5925 6145 -18 305 24 0 0 chr3 189370688 189370729 -38153849 + L1PA15 LINE L1 6105 6145 -20 297 49 0 0 chr3 189370729 189370770 -38153808 + L1PA15 LINE L1 6105 6145 -20 305 24 0 0 chr3 189370770 189370811 -38153767 + L1PA15 LINE L1 6105 6145 -20 305 24 0 0 chr3 189370811 189370852 -38153726 + L1PA15 LINE L1 6105 6145 -20 297 49 0 0 chr3 189370852 189370893 -38153685 + L1PA15 LINE L1 6105 6145 -20 298 49 0 0 chr3 189370893 189370934 -38153644 + L1PA15 LINE L1 6105 6145 -20 298 49 0 0 chr3 189370934 189370975 -38153603 + L1PA15 LINE L1 6105 6145 -20 358 0 122 0 chr3 189370975 189371016 -38153562 + L1PA15 LINE L1 6105 6148 -17 358 19 96 0 chr3 189371016 189371068 -38153510 + L1PA15 LINE L1 6105 6161 -4 358 0 122 0 chr3 189371068 189371088 -38153490 + L1PA15 LINE L1 6148 6164 -1 * 749 179 60 5 chr3 189371070 189371254 -38153324 + L1M3 LINE L1 4174 4367 -1779 628 114 0 0 chr3 189371260 189371348 -38153230 + AluSg1 SINE Alu 1 88 -221 6195 35 13 15 chr3 189371358 189372139 -38152439 + SVA Other Other 635 1386 0 1709 199 52 7 chr3 189372140 189372776 -38151802 + L1M3 LINE L1 5008 5673 -495 1419 211 23 0 chr3 189372777 189372903 -38151675 + AluJo SINE Alu 1 123 -189 288 0 0 0 chr3 189372903 189372935 -38151643 + (TTG)n Simple_repeat Simple_repeat 2 33 0 1419 211 23 0 chr3 189372935 189373068 -38151510 + AluJo SINE Alu 123 266 -46 532 154 34 27 chr3 189373081 189373230 -38151348 + L1MDa LINE L1 2465 2614 -3926 181 312 11 54 chr3 189373341 189373434 -38151144 - MIR SINE MIR -137 125 37 1656 185 6 26 chr3 189373757 189374070 -38150508 + AluJo SINE Alu 1 307 -5 469 297 41 41 chr3 189374078 189374324 -38150254 - MIR SINE MIR -3 259 14 247 296 38 76 chr3 189374771 189374903 -38149675 + L2 LINE L2 3146 3272 0 2314 102 0 13 chr3 189374969 189375282 -38149296 - AluSq SINE Alu -4 309 1 2425 70 0 13 chr3 189375936 189376248 -38148330 - AluY SINE Alu -3 308 1 2126 131 0 0 chr3 189377026 189377324 -38147254 + AluSx SINE Alu 1 298 -14 21 71 0 0 chr3 189378477 189378519 -38146059 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr3 189378601 189378622 -38145956 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 189380380 189380402 -38144176 + AT_rich Low_complexity Low_complexity 1 22 0 808 150 12 36 chr3 189380402 189380569 -38144009 - L1MB1 LINE L1 0 6168 6006 2129 182 4 68 chr3 189380572 189381027 -38143551 + MSTB LTR MaLR 1 426 0 1195 148 0 0 chr3 189381027 189381243 -38143335 + MSTB-int LTR MaLR 1 216 -1435 2196 171 36 5 chr3 189381243 189381658 -38142920 - MSTA LTR MaLR 0 428 1 5918 208 41 1 chr3 189381658 189382896 -38141682 - MSTA-int LTR MaLR 0 1651 364 282 204 0 0 chr3 189382902 189382951 -38141627 - THE1-int LTR MaLR -498 1082 1034 4418 195 27 19 chr3 189382955 189383830 -38140748 + MSTB-int LTR MaLR 770 1651 0 2206 201 12 7 chr3 189383830 189384254 -38140324 + MSTB LTR MaLR 1 426 0 2158 167 32 71 chr3 189384255 189384323 -38140255 - L1MB1 LINE L1 -161 6007 5938 2419 84 3 0 chr3 189384323 189384634 -38139944 - AluSp SINE Alu -1 312 1 2158 167 32 71 chr3 189384634 189385098 -38139480 - L1MB1 LINE L1 -230 5938 5496 1691 223 35 58 chr3 189385113 189385535 -38139043 + L1 LINE L1 4825 5234 -912 2072 108 0 41 chr3 189385535 189385851 -38138727 - AluY SINE Alu -8 303 1 1691 223 35 58 chr3 189385851 189385966 -38138612 + L1 LINE L1 5234 5350 -796 283 236 47 61 chr3 189386467 189386615 -38137963 - MER103 DNA DNA -1 165 20 23 33 0 0 chr3 189387418 189387448 -38137130 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 189388099 189388120 -38136458 + AT_rich Low_complexity Low_complexity 1 21 0 2122 73 22 60 chr3 189388952 189389266 -38135312 + AluY SINE Alu 1 302 -9 2480 53 3 3 chr3 189390620 189390923 -38133655 - AluY SINE Alu -8 303 1 24 0 0 0 chr3 189391067 189391091 -38133487 + AT_rich Low_complexity Low_complexity 1 24 0 27 49 0 0 chr3 189391565 189391606 -38132972 + AT_rich Low_complexity Low_complexity 1 41 0 1299 246 97 16 chr3 189392104 189392539 -38132039 - Charlie1b DNA MER1_type -53 470 1 6746 202 7 7 chr3 189393057 189394285 -38130293 - L1M1 LINE L1 -6317 1248 22 25 0 0 0 chr3 189394557 189394582 -38129996 + AT_rich Low_complexity Low_complexity 1 25 0 1574 105 0 25 chr3 189396110 189396348 -38128230 - L1PA7 LINE L1 -7 6147 5916 247 222 19 0 chr3 189397249 189397303 -38127275 + HAL1 LINE L1 1577 1631 -876 217 250 16 16 chr3 189397737 189397801 -38126777 + GA-rich Low_complexity Low_complexity 4 67 0 714 82 0 0 chr3 189398979 189399077 -38125501 + (TTCC)n Simple_repeat Simple_repeat 3 100 0 884 103 0 0 chr3 189399077 189399207 -38125371 - AluY SINE Alu -10 301 172 225 0 0 0 chr3 189399279 189399304 -38125274 + (A)n Simple_repeat Simple_repeat 1 25 0 1966 87 59 21 chr3 189399445 189399734 -38124844 - AluSp SINE Alu -13 300 1 219 245 0 0 chr3 189399796 189399845 -38124733 + (CTA)n Simple_repeat Simple_repeat 1 49 0 3750 203 42 12 chr3 189400155 189400917 -38123661 + L1MC1 LINE L1 5494 6278 -55 4304 228 136 13 chr3 189400919 189402187 -38122391 - L1M2 LINE L1 -4356 2853 1430 227 333 78 11 chr3 189402453 189402543 -38122035 - L1M2 LINE L1 -6435 774 679 271 297 20 10 chr3 189402576 189402677 -38121901 - L1M2 LINE L1 -6669 540 439 242 254 48 0 chr3 189402678 189402741 -38121837 + L1MCb LINE L1 66 131 -5914 435 223 75 0 chr3 189402743 189402837 -38121741 - MSTD LTR MaLR -83 313 213 24 0 0 0 chr3 189403020 189403044 -38121534 + AT_rich Low_complexity Low_complexity 1 24 0 935 279 144 30 chr3 189403868 189404263 -38120315 + MLT1D LTR MaLR 2 441 -64 25 0 0 0 chr3 189404457 189404482 -38120096 + AT_rich Low_complexity Low_complexity 1 25 0 216 342 56 56 chr3 189404619 189404780 -38119798 + MER5B DNA MER1_type 1 161 -17 4418 219 38 19 chr3 189405530 189407055 -38117523 + L1PA15 LINE L1 1294 2855 -3942 5287 223 23 9 chr3 189407075 189408366 -38116212 + L1PA15 LINE L1 4036 5344 -1453 4822 169 14 3 chr3 189408370 189409775 -38114803 + L1PA15 LINE L1 5398 6810 -6 246 194 0 0 chr3 189410763 189410825 -38113753 + CT-rich Low_complexity Low_complexity 3 64 0 349 315 25 19 chr3 189410839 189411001 -38113577 + CT-rich Low_complexity Low_complexity 3 165 0 381 273 109 80 chr3 189412054 189412344 -38112234 - L1ME3A LINE L1 -231 5939 5659 2293 91 3 19 chr3 189412344 189412662 -38111916 - AluSp SINE Alu 0 313 1 381 273 109 80 chr3 189412662 189412688 -38111890 - L1ME3A LINE L1 -511 5659 5635 1894 149 3 0 chr3 189412688 189412970 -38111608 - AluSq SINE Alu -30 283 1 381 273 109 80 chr3 189412970 189413249 -38111329 - L1ME3A LINE L1 -535 5635 5326 227 279 82 0 chr3 189413309 189413431 -38111147 - L1ME3A LINE L1 -937 5209 5078 198 0 0 0 chr3 189413790 189413812 -38110766 + (TC)n Simple_repeat Simple_repeat 1 22 0 372 244 92 78 chr3 189413845 189414062 -38110516 - L1ME3A LINE L1 -1538 4608 4389 288 309 113 26 chr3 189414260 189414882 -38109696 - L1ME3A LINE L1 -1980 4166 3491 394 269 78 33 chr3 189414941 189415276 -38109302 - L1ME3A LINE L1 -2789 3357 3008 1985 137 14 0 chr3 189415327 189415619 -38108959 + AluSx SINE Alu 1 296 -16 2390 124 6 11 chr3 189416033 189416397 -38108181 - THE1B LTR MaLR 0 364 3 355 306 109 33 chr3 189416873 189417056 -38107522 + MLT1J LTR MaLR 1 197 -314 8226 239 27 16 chr3 189417891 189420064 -38104514 + L1 LINE L1 2448 4653 -1493 1852 146 31 0 chr3 189420064 189420352 -38104226 + AluSx SINE Alu 1 297 -15 8226 239 27 16 chr3 189420352 189420600 -38103978 + L1 LINE L1 4653 4897 -1249 378 270 31 57 chr3 189420878 189421037 -38103541 - MLT2F LTR ERVL 0 663 509 4622 176 39 9 chr3 189421066 189422314 -38102264 + L1PA16 LINE L1 4873 6155 -11 722 325 63 50 chr3 189422373 189422832 -38101746 + MLT1J LTR MaLR 17 481 -30 23 0 0 0 chr3 189423009 189423032 -38101546 + AT_rich Low_complexity Low_complexity 1 23 0 449 300 140 30 chr3 189423054 189423254 -38101324 - MIR SINE MIR -35 227 6 201 338 142 34 chr3 189423546 189423694 -38100884 + L3 LINE CR1 1381 1544 -33 287 244 22 18 chr3 189423802 189424079 -38100499 + (TA)n Simple_repeat Simple_repeat 1 278 0 4125 215 104 28 chr3 189424614 189426574 -38098004 + MER52A LTR ERV1 1 1755 0 956 148 12 60 chr3 189426811 189427092 -38097486 - L1M1 LINE L1 -743 5403 5184 1648 199 11 6 chr3 189427092 189427441 -38097137 + L1MA4 LINE L1 5942 6299 -1 42205 37 22 1 chr3 189427533 189433557 -38091021 + L1PA3 LINE L1 5 6155 0 318 26 0 0 chr3 189434305 189434344 -38090234 + (CA)n Simple_repeat Simple_repeat 1 39 0 183 234 128 64 chr3 189434487 189434581 -38089997 + MER5B DNA MER1_type 78 177 -1 586 224 8 40 chr3 189434590 189434715 -38089863 - MER5A DNA MER1_type 0 189 69 3999 203 7 14 chr3 189434717 189435603 -38088975 - L1PB1 LINE L1 -1564 4582 3703 3428 166 18 20 chr3 189435603 189436443 -38088135 + L1PB1 LINE L1 4604 5451 -700 2109 131 46 22 chr3 189436443 189436809 -38087769 - THE1C LTR MaLR 0 375 1 3428 166 18 20 chr3 189436809 189437149 -38087429 + L1PB1 LINE L1 5451 5790 -361 192 188 40 20 chr3 189437163 189437264 -38087314 + (TA)n Simple_repeat Simple_repeat 1 103 0 279 0 0 0 chr3 189437274 189437305 -38087273 + (CA)n Simple_repeat Simple_repeat 2 32 0 2651 77 0 46 chr3 189437305 189437683 -38086895 + L1PB1 LINE L1 5790 6151 0 371 274 0 0 chr3 189437692 189437765 -38086813 - MER5A DNA MER1_type -116 73 1 27 49 0 0 chr3 189438379 189438420 -38086158 + AT_rich Low_complexity Low_complexity 1 41 0 314 314 87 75 chr3 189438525 189438777 -38085801 + L3 LINE CR1 912 1166 -411 24 67 0 0 chr3 189439919 189439964 -38084614 + AT_rich Low_complexity Low_complexity 1 45 0 25 83 0 0 chr3 189440151 189440211 -38084367 + AT_rich Low_complexity Low_complexity 1 60 0 21 104 0 0 chr3 189440974 189441051 -38083527 + AT_rich Low_complexity Low_complexity 1 77 0 38 51 0 0 chr3 189441117 189441176 -38083402 + AT_rich Low_complexity Low_complexity 1 59 0 4153 103 16 5 chr3 189441874 189442484 -38082094 - L1PA11 LINE L1 -10 6164 5548 396 0 0 0 chr3 189442666 189442710 -38081868 + (TAAA)n Simple_repeat Simple_repeat 2 45 0 1495 216 29 24 chr3 189443527 189443907 -38080671 + L1 LINE L1 4748 5129 -1017 925 194 0 0 chr3 189444013 189444178 -38080400 + FRAM SINE Alu 4 168 -8 1395 200 21 7 chr3 189444209 189444494 -38080084 + AluJo SINE Alu 1 289 -23 1956 131 0 14 chr3 189444527 189444838 -38079740 + AluSx SINE Alu 4 310 0 423 0 0 0 chr3 189445592 189445639 -38078939 + (TG)n Simple_repeat Simple_repeat 2 48 0 16139 52 0 10 chr3 189445784 189448633 -38075945 + L1PA5 LINE L1 3312 6143 -11 1118 247 40 43 chr3 189448794 189449240 -38075338 + LTR56 LTR ERV1 1 445 0 247 296 189 67 chr3 189450278 189450622 -38073956 + L2 LINE L2 2852 3237 -76 189 154 0 0 chr3 189451009 189451048 -38073530 + GA-rich Low_complexity Low_complexity 2 40 0 359 350 34 30 chr3 189451168 189451431 -38073147 + L1ME3A LINE L1 5617 5880 -290 2927 95 12 2 chr3 189451438 189451839 -38072739 + MLT2A1 LTR ERVL 1 405 -39 32822 87 9 3 chr3 189451839 189455930 -38068648 + HERVL-A1 LTR ERVL 1245 5362 -292 2028 139 3 3 chr3 189455930 189456233 -38068345 - AluSx SINE Alu -9 303 1 32822 87 9 3 chr3 189456233 189456528 -38068050 + HERVL-A1 LTR ERVL 5362 5654 0 2412 81 9 0 chr3 189456528 189456849 -38067729 + MLT2A1 LTR ERVL 1 324 -120 494 67 13 0 chr3 189456849 189456924 -38067654 + THE1A-int LTR MaLR 1505 1580 0 1781 163 5 56 chr3 189456924 189457298 -38067280 + THE1A LTR MaLR 1 355 0 24 85 0 0 chr3 189457566 189457625 -38066953 + AT_rich Low_complexity Low_complexity 1 59 0 22 56 0 0 chr3 189457981 189458017 -38066561 + AT_rich Low_complexity Low_complexity 1 36 0 198 318 30 30 chr3 189458089 189458155 -38066423 + L2 LINE L2 3198 3263 -9 244 260 26 0 chr3 189458192 189458269 -38066309 + MER116 DNA Mariner 1 79 -1 204 288 17 17 chr3 189459888 189459947 -38064631 - L2 LINE L2 -2 3270 3212 201 176 0 0 chr3 189459948 189459982 -38064596 + A-rich Low_complexity Low_complexity 1 34 0 428 151 252 75 chr3 189460010 189460169 -38064409 - MER5A DNA MER1_type 0 189 3 1463 254 66 80 chr3 189460517 189461195 -38063383 - L1ME3A LINE L1 -14 6156 5488 26 64 0 0 chr3 189461407 189461454 -38063124 + AT_rich Low_complexity Low_complexity 1 47 0 316 212 86 13 chr3 189461454 189461605 -38062973 - L1ME3A LINE L1 -1006 5140 4979 21 95 0 0 chr3 189462472 189462535 -38062043 + AT_rich Low_complexity Low_complexity 1 63 0 23 0 0 0 chr3 189462893 189462916 -38061662 + AT_rich Low_complexity Low_complexity 1 23 0 1785 65 0 0 chr3 189464279 189464511 -38060067 + L1PA5 LINE L1 5919 6150 -4 352 215 0 35 chr3 189464777 189464921 -38059657 + (TA)n Simple_repeat Simple_repeat 1 139 0 273 223 54 71 chr3 189465440 189465552 -38059026 - MER112 DNA MER1_type -5 255 146 464 353 62 5 chr3 189465833 189466057 -38058521 + LTR16A LTR ERVL 108 344 -106 193 354 0 0 chr3 189466251 189466316 -38058262 - L2 LINE L2 -1 3271 3207 1195 315 177 19 chr3 189466321 189467048 -38057530 + L2 LINE L2 1198 2039 -1275 1951 110 0 7 chr3 189467064 189467337 -38057241 - AluSc SINE Alu -2 307 37 958 293 57 6 chr3 189467490 189467808 -38056770 - MER110 LTR ERV1 0 491 158 741 263 83 0 chr3 189468144 189468349 -38056229 + MER58A DNA MER1_type 2 223 -1 25 83 0 0 chr3 189468410 189468470 -38056108 + AT_rich Low_complexity Low_complexity 1 60 0 21 0 0 0 chr3 189469305 189469326 -38055252 + AT_rich Low_complexity Low_complexity 1 21 0 1020 235 74 32 chr3 189470091 189470535 -38054043 - MLT1D LTR MaLR 0 505 1 310 242 8 25 chr3 189470721 189470840 -38053738 - MLT1J2 LTR MaLR -17 411 276 6358 37 11 0 chr3 189471645 189472404 -38052174 - L1PA5 LINE L1 -2 6152 5386 2012 132 3 0 chr3 189473708 189474011 -38050567 - AluSq SINE Alu -9 304 1 2703 10 0 0 chr3 189474465 189474763 -38049815 - AluYa5 SINE Alu -13 298 1 1951 140 3 13 chr3 189474942 189475257 -38049321 + AluSq SINE Alu 1 312 -1 1109 152 0 0 chr3 189475257 189475428 -38049150 + AluSg/x SINE Alu 132 302 -8 185 343 14 0 chr3 189476788 189476858 -38047720 - MIR SINE MIR -6 256 186 279 114 0 0 chr3 189477391 189477435 -38047143 + (CA)n Simple_repeat Simple_repeat 1 44 0 226 210 210 49 chr3 189477496 189477577 -38047001 - MIR SINE MIR 0 262 169 329 384 49 0 chr3 189477583 189477747 -38046831 + MER97a DNA MER1_type? 8 179 -715 301 227 80 13 chr3 189478275 189478350 -38046228 + MLT1L LTR MaLR 332 411 -204 24 77 0 0 chr3 189478481 189478533 -38046045 + AT_rich Low_complexity Low_complexity 1 52 0 191 349 32 16 chr3 189478792 189478918 -38045660 - L2 LINE L2 -519 2795 2668 1209 289 98 43 chr3 189478951 189479166 -38045412 - L2 LINE L2 -1096 2218 2016 1630 202 18 12 chr3 189479166 189479507 -38045071 + MER61A LTR ERV1 1 343 0 1209 289 98 43 chr3 189479507 189479972 -38044606 - L2 LINE L2 -1298 2016 1500 569 352 76 20 chr3 189479984 189480393 -38044185 - L2 LINE L2 -2066 1248 817 1811 88 27 0 chr3 189480607 189480868 -38043710 - L1PA13 LINE L1 -8 6155 5888 600 106 19 0 chr3 189480871 189480975 -38043603 - L1PA13 LINE L1 -785 5378 5273 * 2467 184 6 26 chr3 189480969 189481506 -38043072 - L1P LINE L1 -806 5340 4815 2464 119 22 8 chr3 189481547 189481917 -38042661 - THE1C LTR MaLR 0 375 1 6784 155 38 3 chr3 189481917 189483043 -38041535 - THE1C-int LTR MaLR 0 1580 415 874 156 6 6 chr3 189483061 189483221 -38041357 - THE1C-int LTR MaLR -1420 160 1 2307 135 11 16 chr3 189483221 189483598 -38040980 - THE1C LTR MaLR 0 375 1 7560 186 15 6 chr3 189483598 189485097 -38039481 + L1P LINE L1 3320 4831 -1315 5888 218 100 56 chr3 189485998 189488311 -38036267 - Tigger1 DNA MER2_type -1 2417 3 2331 70 13 10 chr3 189489464 189489766 -38034812 + AluY SINE Alu 1 303 -8 689 292 121 21 chr3 189489819 189490151 -38034427 + L2 LINE L2 2929 3293 -20 14669 32 1 0 chr3 189491841 189493643 -38030935 - L1PA3 LINE L1 -2195 3951 2149 12090 22 0 1 chr3 189493643 189495867 -38028711 + L1PA3 LINE L1 3972 6191 0 409 207 80 27 chr3 189496036 189496186 -38028392 - L1M4 LINE L1 -3160 2986 2829 212 291 0 0 chr3 189496189 189496244 -38028334 + (TA)n Simple_repeat Simple_repeat 2 56 0 726 248 27 30 chr3 189496289 189496551 -38028027 - L1M4 LINE L1 -3329 2817 2557 21 0 0 0 chr3 189496856 189496877 -38027701 + AT_rich Low_complexity Low_complexity 1 21 0 2336 40 17 3 chr3 189497063 189497359 -38027219 - L1PA4 LINE L1 -11 6144 5845 274 243 65 9 chr3 189497519 189497626 -38026952 - LTR37B LTR ERV1 -100 368 256 219 36 0 0 chr3 189498529 189498557 -38026021 + (CAAA)n Simple_repeat Simple_repeat 3 30 0 184 219 0 0 chr3 189498949 189498990 -38025588 + L3 LINE CR1 1144 1184 -393 332 300 20 0 chr3 189499032 189499132 -38025446 + L3 LINE CR1 1293 1394 -183 5743 116 3 0 chr3 189499278 189500409 -38024169 - L1PB1 LINE L1 0 6151 5017 685 337 47 35 chr3 189502571 189502977 -38021601 + HERV16 LTR ERVL 1019 1429 -3567 1199 303 94 52 chr3 189503062 189503458 -38021120 + HERV16 LTR ERVL 1606 1984 -3312 1727 203 0 0 chr3 189503458 189503759 -38020819 + AluJo SINE Alu 1 301 -11 1199 303 94 52 chr3 189503759 189504344 -38020234 + HERV16 LTR ERVL 1984 2650 -2646 420 301 108 14 chr3 189504459 189504672 -38019906 - L2 LINE L2 -252 3061 2829 321 279 84 79 chr3 189504836 189505026 -38019552 - L2 LINE L2 0 3313 3123 306 0 0 0 chr3 189505324 189505358 -38019220 + (CA)n Simple_repeat Simple_repeat 2 35 0 797 314 18 0 chr3 189506181 189506410 -38018168 - MIR SINE MIR 0 262 30 22 0 0 0 chr3 189506729 189506751 -38017827 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr3 189506920 189506944 -38017634 + AT_rich Low_complexity Low_complexity 1 24 0 1894 137 18 0 chr3 189507208 189507486 -38017092 - AluSc SINE Alu -26 283 1 2612 209 18 20 chr3 189507632 189508192 -38016386 + MER89 LTR ERV1 1 559 0 284 308 128 48 chr3 189508459 189508686 -38015892 - MIR SINE MIR -16 246 2 426 302 111 12 chr3 189508964 189509136 -38015442 + MER5A DNA MER1_type 1 189 0 1008 187 26 48 chr3 189509222 189509452 -38015126 - AluJb SINE Alu -3 309 85 1856 131 0 45 chr3 189510054 189510367 -38014211 - AluSc SINE Alu -10 299 1 297 193 121 29 chr3 189510824 189510964 -38013614 - L1ME4a LINE L1 -2 6119 5967 1485 181 55 7 chr3 189511214 189511507 -38013071 + AluJo SINE Alu 1 307 -5 2676 239 87 12 chr3 189511608 189513003 -38011575 - L1MB7 LINE L1 -15 6980 5482 319 112 28 67 chr3 189513032 189513211 -38011367 + (TA)n Simple_repeat Simple_repeat 2 173 0 3646 277 39 49 chr3 189513343 189514641 -38009937 - L1MB7 LINE L1 -5565 1294 10 398 295 197 5 chr3 189514675 189514868 -38009710 - MIR SINE MIR -26 236 7 1313 115 0 0 chr3 189515702 189515884 -38008694 + AluSg/x SINE Alu 125 306 -6 1263 202 42 60 chr3 189516918 189517249 -38007329 + MLT1B LTR MaLR 66 390 0 382 117 26 26 chr3 189517941 189518018 -38006560 - MADE1 DNA Mariner -1 79 3 23 0 0 0 chr3 189518050 189518073 -38006505 + AT_rich Low_complexity Low_complexity 1 23 0 15523 82 1 1 chr3 189518073 189520977 -38003601 - L1PA6 LINE L1 -7 6147 3244 15910 132 12 19 chr3 189520977 189523552 -38001026 - L1PA6 LINE L1 -3579 2567 11 30 27 0 0 chr3 189524643 189524680 -37999898 + AT_rich Low_complexity Low_complexity 1 37 0 713 122 27 68 chr3 189524774 189524921 -37999657 + FLAM_C SINE Alu 2 142 -1 31 26 0 0 chr3 189526211 189526249 -37998329 + AT_rich Low_complexity Low_complexity 1 38 0 317 280 11 11 chr3 189526811 189526904 -37997674 + L2 LINE L2 56 148 -3166 668 259 95 60 chr3 189526999 189527530 -37997048 - L1MC5 LINE L1 -814 7147 6596 549 283 61 26 chr3 189527576 189527887 -37996691 - L1ME3A LINE L1 -8 6162 5841 184 169 0 31 chr3 189527998 189528063 -37996515 + (TATAA)n Simple_repeat Simple_repeat 2 64 0 30 27 0 0 chr3 189528063 189528100 -37996478 + AT_rich Low_complexity Low_complexity 1 37 0 2256 167 138 6 chr3 189528105 189528642 -37995936 + MER7C DNA MER2_type 1 601 -1 1226 249 92 12 chr3 189528661 189529063 -37995515 + HERVL40 LTR ERVL 3841 4274 -1256 1530 229 88 20 chr3 189529064 189529462 -37995116 - MLT1D LTR MaLR -3 502 78 22 35 0 0 chr3 189529727 189529756 -37994822 + AT_rich Low_complexity Low_complexity 1 29 0 5423 131 231 88 chr3 189529816 189531302 -37993276 + pTR5 LTR ERV1 741 2438 0 208 250 39 0 chr3 189532179 189532231 -37992347 + L2 LINE L2 2659 2712 -602 250 333 13 0 chr3 189532395 189532470 -37992108 - MIR SINE MIR -105 157 82 330 342 10 88 chr3 189532655 189532803 -37991775 - MER5B DNA MER1_type 0 178 47 1961 150 0 0 chr3 189532803 189533096 -37991482 - AluSx SINE Alu -5 307 15 330 342 10 88 chr3 189533096 189533140 -37991438 - MER5B DNA MER1_type -131 47 1 1634 92 62 72 chr3 189533144 189533448 -37991130 - LTR14B LTR ERVK 0 608 308 462 57 0 0 chr3 189533421 189533486 -37991092 - LTR14A LTR ERVK -232 271 54 * 425 78 322 22 chr3 189533487 189533577 -37991001 - LTR14B LTR ERVK -491 117 1 433 324 117 29 chr3 189533581 189533874 -37990704 + L2 LINE L2 2802 3113 -200 189 0 0 0 chr3 189534114 189534135 -37990443 + (TA)n Simple_repeat Simple_repeat 2 22 0 1988 133 0 0 chr3 189534137 189534416 -37990162 - AluSg SINE Alu -31 279 1 289 324 35 0 chr3 189534418 189534560 -37990018 + MLT1G1 LTR MaLR 1 147 -448 429 181 48 114 chr3 189534793 189534964 -37989614 + MLT1H1 LTR MaLR 434 555 0 234 290 37 47 chr3 189534976 189535083 -37989495 - MIR SINE MIR -39 223 118 1546 106 0 0 chr3 189535439 189535647 -37988931 - AluSg/x SINE Alu -15 295 88 3932 146 46 51 chr3 189535647 189536607 -37987971 + pTR5 LTR ERV1 743 2019 -419 259 245 32 21 chr3 189536607 189536701 -37987877 + LTR30 LTR ERV1 548 642 -80 1585 81 0 9 chr3 189536704 189536927 -37987651 + pTR5 LTR ERV1 172 392 -2046 635 93 0 0 chr3 189536927 189537013 -37987565 - AluSc SINE Alu -218 91 6 1452 212 50 67 chr3 189537803 189538340 -37986238 - MER67C LTR ERV1 0 514 4 6394 57 11 4 chr3 189539080 189539901 -37984677 - L1PA7 LINE L1 -7 6147 5321 372 249 104 36 chr3 189539889 189540082 -37984496 + L1M1 LINE L1 2861 3066 -4499 * 355 171 0 0 chr3 189540082 189540152 -37984426 + L1MA4A LINE L1 6221 6290 -13 3290 93 9 7 chr3 189540416 189540868 -37983710 + MLT2A2 LTR ERVL 1 453 0 184 241 111 0 chr3 189541594 189541648 -37982930 - MIR SINE MIR -2 260 201 1832 225 59 12 chr3 189542831 189543320 -37981258 - L1MB7 LINE L1 -26 6656 6145 3282 249 47 28 chr3 189543406 189544819 -37979759 - L1MB7 LINE L1 -530 6152 4717 313 44 22 0 chr3 189544839 189544884 -37979694 - MADE1 DNA Mariner -34 46 1 4585 249 68 49 chr3 189544884 189547151 -37977427 - L1MB7 LINE L1 -4250 2396 8 37 39 0 0 chr3 189547187 189547238 -37977340 + AT_rich Low_complexity Low_complexity 1 51 0 233 165 82 0 chr3 189547267 189547352 -37977226 + (TA)n Simple_repeat Simple_repeat 2 93 0 1372 255 57 4 chr3 189548185 189548734 -37975844 - L1M4 LINE L1 -1097 5049 4472 22 70 0 0 chr3 189548860 189548903 -37975675 + AT_rich Low_complexity Low_complexity 1 43 0 27 49 0 0 chr3 189549200 189549241 -37975337 + AT_rich Low_complexity Low_complexity 1 41 0 21 71 0 0 chr3 189549412 189549454 -37975124 + AT_rich Low_complexity Low_complexity 1 42 0 2646 0 41 0 chr3 189549654 189549946 -37974632 - AluYa5 SINE Alu -7 304 1 781 269 18 14 chr3 189550194 189550413 -37974165 - LTR16B LTR ERVL -1 463 244 690 373 26 33 chr3 189551025 189551449 -37973129 + LTR16B LTR ERVL 34 454 -10 463 143 29 19 chr3 189551768 189551873 -37972705 + L1M LINE L1 5284 5389 -955 13716 41 0 5 chr3 189551873 189554310 -37970268 + L1PA5 LINE L1 3714 6146 -8 189 0 0 0 chr3 189554827 189554848 -37969730 + (A)n Simple_repeat Simple_repeat 1 21 0 438 359 80 41 chr3 189555010 189555664 -37968914 - L1ME4a LINE L1 -179 5942 5258 455 205 66 36 chr3 189555960 189556126 -37968452 + L1ME1 LINE L1 5676 5846 -320 2228 114 3 0 chr3 189556150 189556457 -37968121 + AluSx SINE Alu 1 308 -4 383 202 11 0 chr3 189556467 189556561 -37968017 + GA-rich Low_complexity Low_complexity 2 96 0 890 258 42 11 chr3 189556570 189556853 -37967725 + L1ME1 LINE L1 5867 6158 -8 295 251 43 21 chr3 189556897 189557084 -37967494 + L1M4 LINE L1 3089 3279 -2867 210 390 57 44 chr3 189559766 189559994 -37964584 - L2 LINE L2 -188 3084 2854 252 288 37 86 chr3 189560038 189560201 -37964377 - L2 LINE L2 -571 2743 2589 432 98 0 0 chr3 189560411 189560472 -37964106 + MADE1 DNA Mariner 20 80 0 1954 149 78 57 chr3 189561689 189562076 -37962502 + MSTB1 LTR MaLR 1 399 -33 1974 136 6 19 chr3 189562076 189562392 -37962186 - AluSq SINE Alu -1 312 1 1954 149 78 57 chr3 189562392 189562427 -37962151 + MSTB1 LTR MaLR 399 432 0 405 341 0 8 chr3 189563446 189563578 -37961000 + MER5A DNA MER1_type 59 189 0 182 314 43 0 chr3 189563960 189564030 -37960548 - MIR3 SINE MIR -11 197 125 2889 174 20 0 chr3 189565376 189565877 -37958701 - Tigger1 DNA MER2_type 0 2418 1908 1151 205 30 16 chr3 189565977 189566392 -37958186 + MLT1D LTR MaLR 1 505 0 22 0 0 0 chr3 189566619 189566641 -37957937 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 189567219 189567246 -37957332 + AT_rich Low_complexity Low_complexity 1 27 0 527 202 0 10 chr3 189568389 189568488 -37956090 + MER4A LTR ERV1 1 98 -566 * 1733 132 155 82 chr3 189568484 189568864 -37955714 + MER4A LTR ERV1 257 664 0 22 0 0 0 chr3 189569239 189569261 -37955317 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 189569483 189569504 -37955074 + AT_rich Low_complexity Low_complexity 1 21 0 199 147 0 147 chr3 189569564 189569632 -37954946 - L2 LINE L2 -389 2883 2826 678 310 108 10 chr3 189569633 189569930 -37954648 - L2 LINE L2 -627 2687 2362 358 291 58 0 chr3 189569952 189570055 -37954523 + MLT1K LTR MaLR 326 434 -154 304 341 78 59 chr3 189570083 189570338 -37954240 + L2 LINE L2 2838 3097 -216 233 266 25 0 chr3 189570355 189570434 -37954144 + (TA)n Simple_repeat Simple_repeat 2 82 0 24 0 0 0 chr3 189571129 189571153 -37953425 + AT_rich Low_complexity Low_complexity 1 24 0 13617 26 0 0 chr3 189571228 189573600 -37950978 - L1PA3 LINE L1 -3 6152 3783 7319 36 0 0 chr3 189573600 189574514 -37950064 + L1PA3 LINE L1 2871 3784 -2362 2536 100 0 6 chr3 189574985 189575344 -37949234 - L1PA8 LINE L1 -2 6170 5814 1805 39 0 0 chr3 189575346 189575552 -37949026 - AluY SINE Alu -1 310 105 207 0 0 0 chr3 189575584 189575607 -37948971 + (TAAAAA)n Simple_repeat Simple_repeat 2 24 0 194 376 0 35 chr3 189576719 189576804 -37947774 - L2 LINE L2 -81 3191 3110 432 363 5 15 chr3 189578287 189578491 -37946087 + MIR SINE MIR 28 229 -33 183 80 0 0 chr3 189578514 189578539 -37946039 + (CAT)n Simple_repeat Simple_repeat 3 27 0 14276 207 34 8 chr3 189578600 189582149 -37942429 + L1PB1 LINE L1 6 3998 -2869 222 37 0 0 chr3 189582149 189582176 -37942402 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 14276 207 34 8 chr3 189582176 189585114 -37939464 + L1PB1 LINE L1 3998 6859 -8 28 48 0 0 chr3 189585160 189585202 -37939376 + AT_rich Low_complexity Low_complexity 1 42 0 4270 200 120 1 chr3 189585313 189586224 -37938354 + LTR28 LTR ERV1 2 1020 0 311 225 36 27 chr3 189586964 189587075 -37937503 + L1ME2 LINE L1 6053 6164 0 23 0 0 0 chr3 189588052 189588075 -37936503 + AT_rich Low_complexity Low_complexity 1 23 0 681 323 132 15 chr3 189588327 189588784 -37935794 + L2 LINE L2 2717 3246 -67 1640 269 78 30 chr3 189589851 189590379 -37934199 + MLT1E LTR MaLR 40 592 -1 180 77 0 0 chr3 189590398 189590424 -37934154 + (A)n Simple_repeat Simple_repeat 1 26 0 187 250 0 0 chr3 189591042 189591086 -37933492 + MIR SINE MIR 211 254 -8 388 272 18 54 chr3 189591289 189591513 -37933065 + L1MC4 LINE L1 7826 8041 -1 1335 67 6 0 chr3 189591691 189591871 -37932707 + L1MA1 LINE L1 6122 6302 0 357 305 0 0 chr3 189592153 189592235 -37932343 - MER2 DNA MER2_type -262 83 2 1294 60 0 18 chr3 189592401 189592568 -37932010 + AluY SINE Alu 129 292 -19 2293 50 3 3 chr3 189592574 189593002 -37931576 + AluY SINE Alu 1 428 0 588 75 12 0 chr3 189593004 189593211 -37931367 + AluY SINE Alu 203 410 0 1354 243 56 9 chr3 189593964 189594302 -37930276 + MLT2D LTR ERVL 13 366 -48 252 0 0 0 chr3 189594312 189594340 -37930238 + (TG)n Simple_repeat Simple_repeat 2 29 0 299 325 70 0 chr3 189594362 189594476 -37930102 + MIR3 SINE MIR 76 197 -11 1660 228 43 18 chr3 189596751 189597261 -37927317 + Charlie1b DNA MER1_type 1 523 0 1902 118 84 64 chr3 189597840 189598197 -37926381 - THE1B LTR MaLR 0 364 1 609 205 41 0 chr3 189599389 189599511 -37925067 + MER5A DNA MER1_type 63 189 0 310 250 0 0 chr3 189602339 189602411 -37922167 + MER94 DNA DNA 44 115 -19 2156 117 3 0 chr3 189603470 189603769 -37920809 + AluSx SINE Alu 1 300 -12 22 0 0 0 chr3 189604246 189604268 -37920310 + AT_rich Low_complexity Low_complexity 1 22 0 4485 118 22 10 chr3 189604298 189604985 -37919593 + L1PA11 LINE L1 5478 6172 -2 248 255 92 78 chr3 189605443 189605596 -37918982 - L2 LINE L2 0 3313 3159 2482 43 0 3 chr3 189605844 189606143 -37918435 - AluY SINE Alu -13 298 1 27 0 0 0 chr3 189606227 189606254 -37918324 + AT_rich Low_complexity Low_complexity 1 27 0 24 32 0 0 chr3 189606334 189606365 -37918213 + AT_rich Low_complexity Low_complexity 1 31 0 381 257 113 15 chr3 189606461 189606896 -37917682 - L1ME LINE L1 -707 5455 4971 242 299 128 21 chr3 189607153 189607340 -37917238 - L1ME LINE L1 -1439 4707 4501 491 319 69 39 chr3 189607445 189607777 -37916801 - L1ME LINE L1 -2932 3214 2873 1911 178 62 91 chr3 189607976 189608505 -37916073 - MLT2B2 LTR ERVL -1 514 1 291 136 0 0 chr3 189609708 189609767 -37914811 + (CA)n Simple_repeat Simple_repeat 2 60 0 2203 75 0 0 chr3 189610034 189610315 -37914263 - AluY SINE Alu 0 311 31 219 133 0 0 chr3 189610505 189610550 -37914028 + (TCTG)n Simple_repeat Simple_repeat 4 48 0 269 304 51 13 chr3 189611063 189611221 -37913357 - L1MC4 LINE L1 -780 7262 7099 286 266 27 90 chr3 189611331 189611553 -37913025 + L1MC4 LINE L1 7835 8042 0 369 293 94 36 chr3 189611639 189612052 -37912526 + L1ME4a LINE L1 5469 5905 -216 240 279 38 25 chr3 189612249 189612328 -37912250 + MER5A DNA MER1_type 85 164 -25 264 221 0 15 chr3 189613053 189613121 -37911457 - L1MC4 LINE L1 -1337 6705 6639 574 276 13 0 chr3 189613243 189613399 -37911179 + MIR SINE MIR 78 235 -27 2237 114 0 0 chr3 189613681 189613980 -37910598 + AluSx SINE Alu 1 299 -13 486 0 0 0 chr3 189613980 189614034 -37910544 + (TCTA)n Simple_repeat Simple_repeat 4 57 0 1375 218 36 11 chr3 189615228 189615508 -37909070 - AluJo SINE Alu -21 291 5 232 316 68 8 chr3 189615803 189615936 -37908642 + MIR SINE MIR 118 258 -4 25 0 0 0 chr3 189617837 189617862 -37906716 + AT_rich Low_complexity Low_complexity 1 25 0 453 18 0 0 chr3 189619471 189619527 -37905051 + L1PA4 LINE L1 6097 6152 -3 21 71 0 0 chr3 189620052 189620094 -37904484 + AT_rich Low_complexity Low_complexity 1 42 0 1478 191 102 0 chr3 189620737 189621051 -37903527 + MER7A DNA MER2_type 1 344 -2 21 36 0 0 chr3 189621123 189621151 -37903427 + AT_rich Low_complexity Low_complexity 1 28 0 205 261 0 0 chr3 189621247 189621312 -37903266 + (TA)n Simple_repeat Simple_repeat 2 66 0 2147 102 7 0 chr3 189621726 189622010 -37902568 + AluSx SINE Alu 1 286 -26 181 75 50 0 chr3 189626843 189626883 -37897695 + (TTAA)n Simple_repeat Simple_repeat 4 45 0 22 56 0 0 chr3 189626913 189626949 -37897629 + AT_rich Low_complexity Low_complexity 1 36 0 764 250 43 5 chr3 189627320 189627508 -37897070 + MER20 DNA MER1_type 24 218 -1 2501 255 120 42 chr3 189627676 189628529 -37896049 - L1ME2 LINE L1 -9 6155 5370 1827 51 0 4 chr3 189628529 189628764 -37895814 + L1PA4 LINE L1 5919 6152 -3 2501 255 120 42 chr3 189628764 189630241 -37894337 - L1ME2 LINE L1 -794 5370 3607 1344 192 6 64 chr3 189630241 189630553 -37894025 + AluJo SINE Alu 1 294 -18 2501 255 120 42 chr3 189630553 189630783 -37893795 - L1ME2 LINE L1 -2557 3607 3396 280 238 48 24 chr3 189631772 189631856 -37892722 + MIR SINE MIR 82 167 -95 189 0 0 0 chr3 189632079 189632100 -37892478 + (TTCA)n Simple_repeat Simple_repeat 4 24 0 24 0 0 0 chr3 189632297 189632321 -37892257 + AT_rich Low_complexity Low_complexity 1 24 0 26 74 0 0 chr3 189632730 189632784 -37891794 + AT_rich Low_complexity Low_complexity 1 54 0 199 359 99 38 chr3 189633274 189633405 -37891173 - MIR3 SINE MIR -67 141 3 2104 134 3 0 chr3 189634940 189635246 -37889332 + AluSq SINE Alu 1 307 -6 262 278 214 40 chr3 189635337 189635510 -37889068 + MIR SINE MIR 2 204 -58 261 369 34 13 chr3 189635656 189635805 -37888773 - MIR SINE MIR -12 250 99 25 0 0 0 chr3 189635821 189635846 -37888732 + AT_rich Low_complexity Low_complexity 1 25 0 28 71 0 0 chr3 189636044 189636100 -37888478 + AT_rich Low_complexity Low_complexity 1 56 0 234 250 36 71 chr3 189636470 189636554 -37888024 + L2 LINE L2 3220 3300 -13 * 2009 311 84 41 chr3 189636541 189637966 -37886612 - L2 LINE L2 -147 3166 1647 29 60 0 0 chr3 189638697 189638747 -37885831 + AT_rich Low_complexity Low_complexity 1 50 0 242 291 118 47 chr3 189638802 189638929 -37885649 - MIR SINE MIR -74 188 53 253 132 0 0 chr3 189639173 189639211 -37885367 - MER53 DNA DNA -3 186 149 50 80 0 0 chr3 189639298 189639411 -37885167 + AT_rich Low_complexity Low_complexity 1 113 0 458 231 16 0 chr3 189639427 189639548 -37885030 - MER53 DNA DNA -66 123 1 21 36 0 0 chr3 189640530 189640558 -37884020 + AT_rich Low_complexity Low_complexity 1 28 0 26 50 0 0 chr3 189641662 189641702 -37882876 + AT_rich Low_complexity Low_complexity 1 40 0 33 56 0 0 chr3 189642628 189642682 -37881896 + AT_rich Low_complexity Low_complexity 1 54 0 24 0 0 0 chr3 189642825 189642849 -37881729 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 189645189 189645212 -37879366 + AT_rich Low_complexity Low_complexity 1 23 0 652 152 90 41 chr3 189645540 189645685 -37878893 - AluJb SINE Alu -22 290 139 2145 92 0 7 chr3 189646049 189646344 -37878234 + AluY SINE Alu 17 309 -2 1634 167 3 44 chr3 189646454 189646747 -37877831 + AluSx SINE Alu 1 281 -31 395 0 40 0 chr3 189646750 189646800 -37877778 + (TAAA)n Simple_repeat Simple_repeat 2 53 0 24 32 0 0 chr3 189647558 189647589 -37876989 + AT_rich Low_complexity Low_complexity 1 31 0 390 253 13 53 chr3 189647727 189647877 -37876701 - L2 LINE L2 -6 3307 3164 450 384 70 31 chr3 189648913 189649298 -37875280 + L2 LINE L2 239 638 -2676 1666 334 133 29 chr3 189649298 189650698 -37873880 + L2 LINE L2 998 2543 -771 532 284 8 15 chr3 189651024 189651158 -37873420 + L2 LINE L2 3179 3311 -2 273 235 96 102 chr3 189651172 189651280 -37873298 + L2 LINE L2 2084 2193 -1121 2192 57 11 0 chr3 189651280 189651595 -37872983 + AluY SINE Alu 1 318 0 273 235 96 102 chr3 189651595 189651651 -37872927 + L2 LINE L2 2193 2248 -1066 786 348 89 8 chr3 189651715 189652097 -37872481 + L2 LINE L2 2487 2899 -415 21 100 0 0 chr3 189652714 189652784 -37871794 + AT_rich Low_complexity Low_complexity 1 70 0 303 291 78 17 chr3 189653364 189653543 -37871035 + L2 LINE L2 3104 3293 -20 184 380 53 29 chr3 189653971 189654142 -37870436 + L3 LINE CR1 1384 1558 -19 478 261 0 45 chr3 189655481 189655615 -37868963 - FLAM_A SINE Alu -5 128 1 455 326 122 0 chr3 189655743 189655915 -37868663 + MIR SINE MIR 60 252 -10 201 39 0 0 chr3 189656029 189656055 -37868523 + (CA)n Simple_repeat Simple_repeat 2 27 0 260 292 62 26 chr3 189656169 189656282 -37868296 - L2 LINE L2 -15 3298 3182 510 196 0 0 chr3 189656922 189657034 -37867544 + GA-rich Low_complexity Low_complexity 3 114 0 252 236 0 0 chr3 189657442 189657531 -37867047 + A-rich Low_complexity Low_complexity 1 89 0 * 754 169 6 6 chr3 189657514 189657686 -37866892 + GA-rich Low_complexity Low_complexity 3 174 0 248 167 0 19 chr3 189658821 189658875 -37865703 + CT-rich Low_complexity Low_complexity 5 57 0 21 36 0 0 chr3 189659862 189659890 -37864688 + AT_rich Low_complexity Low_complexity 1 28 0 30 0 0 0 chr3 189659918 189659948 -37864630 + AT_rich Low_complexity Low_complexity 1 30 0 222 91 0 0 chr3 189660009 189660042 -37864536 + (CA)n Simple_repeat Simple_repeat 2 34 0 1905 183 5 30 chr3 189660054 189660426 -37864152 + MLT1A1 LTR MaLR 3 365 0 25 31 0 0 chr3 189660685 189660717 -37863861 + AT_rich Low_complexity Low_complexity 1 32 0 2077 102 3 3 chr3 189660729 189661014 -37863564 - AluSx SINE Alu -13 299 15 199 342 26 0 chr3 189661247 189661323 -37863255 - L2 LINE L2 -2 3311 3234 977 221 0 9 chr3 189661626 189661848 -37862730 + L1 LINE L1 5015 5234 -912 1824 272 44 60 chr3 189662731 189662801 -37861777 + L2 LINE L2 2283 2353 -960 1850 129 22 0 chr3 189662801 189663122 -37861456 - AluSx SINE Alu 0 327 1 1824 272 44 60 chr3 189663122 189663499 -37861079 + L2 LINE L2 2353 2717 -596 2063 97 4 0 chr3 189663499 189663777 -37860801 - AluSg SINE Alu -31 279 1 1824 272 44 60 chr3 189663777 189664078 -37860500 + L2 LINE L2 2717 3021 -292 532 272 63 116 chr3 189664143 189664664 -37859914 - MER21B LTR ERV1 -202 729 160 434 299 49 42 chr3 189664704 189664968 -37859610 + L2 LINE L2 3048 3313 0 27 49 0 0 chr3 189665057 189665098 -37859480 + AT_rich Low_complexity Low_complexity 1 41 0 22 56 0 0 chr3 189665721 189665757 -37858821 + AT_rich Low_complexity Low_complexity 1 36 0 243 0 0 0 chr3 189666651 189666678 -37857900 + (CAAAA)n Simple_repeat Simple_repeat 3 29 0 214 195 0 0 chr3 189669178 189669219 -37855359 + (TATAA)n Simple_repeat Simple_repeat 5 45 0 30 27 0 0 chr3 189669934 189669971 -37854607 + AT_rich Low_complexity Low_complexity 1 37 0 1394 221 19 48 chr3 189671779 189672155 -37852423 + MLT1A1 LTR MaLR 1 365 0 28 48 0 0 chr3 189672901 189672943 -37851635 + AT_rich Low_complexity Low_complexity 1 42 0 9227 129 11 1 chr3 189673024 189673522 -37851056 - L1PA8 LINE L1 -2 6170 5679 2002 128 3 33 chr3 189673522 189673828 -37850750 - AluSp SINE Alu -11 302 6 9227 129 11 1 chr3 189673828 189675596 -37848982 - L1PA8 LINE L1 -493 5679 3913 207 234 122 75 chr3 189676043 189676150 -37848428 - L2 LINE L2 -16 3256 3145 252 355 107 0 chr3 189676223 189676344 -37848234 - L2 LINE L2 -468 2846 2713 25 51 0 0 chr3 189676539 189676578 -37848000 + AT_rich Low_complexity Low_complexity 1 39 0 2076 149 35 73 chr3 189676672 189677123 -37847455 - Tigger2a DNA MER2_type 0 434 1 28 48 0 0 chr3 189677360 189677402 -37847176 + AT_rich Low_complexity Low_complexity 1 42 0 1966 125 10 19 chr3 189680155 189680468 -37844110 + AluSp SINE Alu 1 310 -3 1386 219 113 3 chr3 189680540 189680851 -37843727 - MER2 DNA MER2_type 0 345 1 2164 109 0 0 chr3 189682531 189682852 -37841726 - AluSx SINE Alu 0 321 1 2394 148 54 7 chr3 189684212 189684617 -37839961 - MSTA LTR MaLR -2 426 3 241 245 0 0 chr3 189684995 189685048 -37839530 + (CATA)n Simple_repeat Simple_repeat 2 54 0 57 54 0 0 chr3 189685201 189685293 -37839285 + AT_rich Low_complexity Low_complexity 1 92 0 26 30 0 0 chr3 189685353 189685386 -37839192 + AT_rich Low_complexity Low_complexity 1 33 0 13949 181 74 22 chr3 189685672 189687951 -37836627 + L1M1 LINE L1 16 2173 -5392 2109 119 3 0 chr3 189687951 189688246 -37836332 + AluSg SINE Alu 1 296 -14 13949 181 74 22 chr3 189688246 189688817 -37835761 + L1M1 LINE L1 2173 2712 -4853 180 0 0 0 chr3 189688817 189688837 -37835741 + (CAA)n Simple_repeat Simple_repeat 2 21 0 13949 181 74 22 chr3 189688837 189691804 -37832774 + L1M1 LINE L1 2712 6181 -1384 1181 186 60 167 chr3 189691834 189692355 -37832223 + MER67D LTR ERV1 50 514 0 577 284 23 17 chr3 189692932 189693108 -37831470 + MER69A DNA AcHobo 1 177 0 654 79 0 0 chr3 189694368 189694457 -37830121 + (TA)n Simple_repeat Simple_repeat 2 90 0 1149 279 177 34 chr3 189694473 189695486 -37829092 - L2 LINE L2 -18 3295 2135 720 235 8 76 chr3 189695587 189695825 -37828753 - LTR1B LTR ERV1 -604 222 1 39 38 0 0 chr3 189695954 189696007 -37828571 + AT_rich Low_complexity Low_complexity 1 53 0 202 150 17 33 chr3 189696363 189696423 -37828155 + T-rich Low_complexity Low_complexity 3 61 0 304 253 91 97 chr3 189697457 189697777 -37826801 + L1M2 LINE L1 1688 2005 -4844 322 294 47 38 chr3 189697991 189698202 -37826376 + L1MC4a LINE L1 5718 5930 -1878 905 302 118 79 chr3 189699381 189700113 -37824465 - L2 LINE L2 -231 3082 2323 24 32 0 0 chr3 189701436 189701467 -37823111 + AT_rich Low_complexity Low_complexity 1 31 0 180 246 18 70 chr3 189701613 189701670 -37822908 - MIR3 SINE MIR -49 159 106 2075 212 132 32 chr3 189702636 189703387 -37821191 - LTR1B LTR ERV1 0 826 1 288 122 184 0 chr3 189704372 189704421 -37820157 - MER21A LTR ERV1 -118 813 756 1639 266 117 31 chr3 189704422 189704963 -37819615 - MER21B LTR ERV1 -258 605 19 328 232 43 0 chr3 189704990 189705059 -37819519 - MER21B LTR ERV1 -777 86 15 1783 174 0 16 chr3 189705543 189705860 -37818718 + AluSx SINE Alu 1 312 0 742 251 26 5 chr3 189706952 189707143 -37817435 - MER58 DNA MER1_type -144 197 3 25 31 0 0 chr3 189707182 189707214 -37817364 + AT_rich Low_complexity Low_complexity 1 32 0 641 284 32 12 chr3 189707404 189707654 -37816924 - L1ME2 LINE L1 -8 6156 5902 924 304 26 16 chr3 189707656 189708324 -37816254 - L1MEc LINE L1 -3604 2476 1840 274 307 57 39 chr3 189708364 189708644 -37815934 - L1MEc LINE L1 -4534 1546 1262 2140 103 0 42 chr3 189708746 189709058 -37815520 + AluSq SINE Alu 5 303 -10 207 0 0 0 chr3 189709058 189709081 -37815497 + (TA)n Simple_repeat Simple_repeat 2 24 0 426 325 102 12 chr3 189709568 189709823 -37814755 - L1MEc LINE L1 -4817 1263 986 251 259 0 0 chr3 189709826 189709880 -37814698 - MLT2B3 LTR ERVL -2 552 499 10906 168 27 22 chr3 189709881 189711792 -37812786 - ERVL-B3 LTR ERVL -1798 3966 2048 3199 214 32 3 chr3 189711812 189712460 -37812118 - ERVL-B3 LTR ERVL -3909 1855 1189 * 3337 247 66 7 chr3 189712456 189713411 -37811167 - ERVL-B3 LTR ERVL -4660 1029 2 2688 214 27 8 chr3 189713418 189713435 -37811143 - MLT2B3 LTR ERVL -20 534 519 507 33 0 0 chr3 189713435 189713496 -37811082 + (TAGA)n Simple_repeat Simple_repeat 2 62 0 2688 214 27 8 chr3 189713496 189714001 -37810577 - MLT2B3 LTR ERVL -35 519 2 517 288 52 33 chr3 189714007 189714430 -37810148 - L1MEc LINE L1 -5083 987 557 650 277 102 60 chr3 189714756 189715410 -37809168 - L1MC4 LINE L1 -658 7384 6703 633 201 7 0 chr3 189715418 189715557 -37809021 - L1MA4A LINE L1 0 6303 6164 11507 218 20 33 chr3 189715557 189716081 -37808497 - L1 LINE L1 -1118 5730 5201 1880 137 27 20 chr3 189716081 189716380 -37808198 - AluSx SINE Alu -7 305 5 11507 218 20 33 chr3 189716380 189719982 -37804596 - L1 LINE L1 -1647 5201 1645 22 0 0 0 chr3 189719982 189720004 -37804574 + AT_rich Low_complexity Low_complexity 1 22 0 426 305 118 9 chr3 189720148 189720506 -37804072 + L1M4 LINE L1 1541 2025 -4619 2105 266 92 26 chr3 189720633 189721835 -37802743 + L1M4 LINE L1 2270 3547 -3097 1352 141 55 9 chr3 189721835 189722055 -37802523 + MER30 DNA MER1_type 1 230 0 2105 266 92 26 chr3 189722055 189722436 -37802142 + L1M4 LINE L1 3547 3901 -2743 435 302 74 0 chr3 189722436 189722638 -37801940 + L1M4 LINE L1 4262 4478 -2166 267 241 106 50 chr3 189722654 189722795 -37801783 + L1M4 LINE L1 4542 4690 -1954 229 244 0 0 chr3 189722800 189722845 -37801733 + GA-rich Low_complexity Low_complexity 3 47 0 517 248 83 35 chr3 189722845 189723159 -37801419 + L1M4 LINE L1 4671 4999 -1645 473 261 8 0 chr3 189723186 189723331 -37801247 + L1ME1 LINE L1 6013 6161 -5 21 0 0 0 chr3 189723332 189723353 -37801225 + AT_rich Low_complexity Low_complexity 1 21 0 344 296 93 25 chr3 189723597 189723759 -37800819 - L1M4 LINE L1 -3333 2813 2641 213 253 13 13 chr3 189723785 189723864 -37800714 + (TA)n Simple_repeat Simple_repeat 1 79 0 333 310 11 0 chr3 189724011 189724098 -37800480 - L1MC/D LINE L1 -2208 5600 5513 521 261 0 0 chr3 189724225 189724340 -37800238 + LTR28 LTR ERV1 1 115 -905 1877 192 55 31 chr3 189724351 189724888 -37799690 + MLT2A2 LTR ERVL 1 554 0 879 232 88 70 chr3 189724967 189725648 -37798930 + MER52A LTR ERV1 275 1753 -2 25 0 0 0 chr3 189725735 189725760 -37798818 + AT_rich Low_complexity Low_complexity 1 25 0 25 31 0 0 chr3 189726171 189726203 -37798375 + AT_rich Low_complexity Low_complexity 1 32 0 181 339 77 0 chr3 189726310 189726375 -37798203 + L2 LINE L2 3203 3272 0 370 349 26 16 chr3 189726421 189726610 -37797968 + MIR SINE MIR 72 262 0 194 374 20 27 chr3 189727431 189727578 -37797000 - MIR SINE MIR -42 220 75 29 0 0 0 chr3 189727743 189727772 -37796806 + AT_rich Low_complexity Low_complexity 1 29 0 745 215 13 0 chr3 189727847 189727996 -37796582 - MLT1E3 LTR MaLR 0 624 474 511 263 60 63 chr3 189728015 189728430 -37796148 - HAL1 LINE L1 -1201 1306 893 492 48 0 0 chr3 189729066 189729129 -37795449 + (TC)n Simple_repeat Simple_repeat 2 64 0 210 71 0 0 chr3 189729128 189729156 -37795422 + (TG)n Simple_repeat Simple_repeat 1 28 0 * 1351 233 107 50 chr3 189729184 189729647 -37794931 - MLT2B1 LTR ERVL -19 460 3 206 255 0 0 chr3 189730680 189730731 -37793847 + MIR SINE MIR 153 203 -59 392 311 68 5 chr3 189731342 189731532 -37793046 - MIR SINE MIR 0 262 61 329 343 65 36 chr3 189731969 189732278 -37792300 + L2 LINE L2 2341 2658 -656 284 328 80 80 chr3 189732404 189732718 -37791860 + L2 LINE L2 2869 3182 -90 7866 194 107 9 chr3 189733152 189734748 -37789830 + MER52A LTR ERV1 4 1755 0 2648 163 5 22 chr3 189734748 189735197 -37789381 + MER52A-int LTR ERV1 1 441 -6650 266 167 0 30 chr3 189735197 189735263 -37789315 + CT-rich Low_complexity Low_complexity 1 64 0 5825 156 72 75 chr3 189735263 189735379 -37789199 + MER52A-int LTR ERV1 412 527 -4690 2114 128 0 3 chr3 189735379 189735692 -37788886 + AluSx SINE Alu 1 312 0 5825 156 72 75 chr3 189735692 189736920 -37787658 + MER52A-int LTR ERV1 527 4730 -487 314 89 0 22 chr3 189736926 189736971 -37787607 + HUERS-P2 LTR ERV1 3912 3955 -925 * 6379 142 45 48 chr3 189736969 189737096 -37787482 + HUERS-P2 LTR ERV1 1850 1976 -5285 1945 150 10 0 chr3 189737096 189737389 -37787189 + AluSg1 SINE Alu 1 296 -13 6379 142 45 48 chr3 189737389 189738113 -37786465 + HUERS-P2 LTR ERV1 1976 2700 -4561 2158 89 0 68 chr3 189738113 189738438 -37786140 + AluY SINE Alu 1 303 -8 6379 142 45 48 chr3 189738438 189739321 -37785257 + HUERS-P2 LTR ERV1 2700 3584 -3677 2328 70 10 3 chr3 189739321 189739621 -37784957 + AluY SINE Alu 1 302 -9 6379 142 45 48 chr3 189739621 189740146 -37784432 + HUERS-P2 LTR ERV1 3584 5056 -2205 1392 178 0 4 chr3 189740143 189740379 -37784199 + HUERS-P2 LTR ERV1 3684 3918 -1299 * 1771 193 81 28 chr3 189740394 189740788 -37783790 + HUERS-P2 LTR ERV1 2672 3086 -2 6463 204 165 9 chr3 189740789 189742307 -37782271 + MER52A LTR ERV1 1 1755 0 505 318 76 33 chr3 189743757 189743968 -37780610 - L2 LINE L2 -1 3312 3093 1128 297 48 24 chr3 189744085 189744462 -37780116 + MLT1F1 LTR MaLR 95 480 -87 584 208 48 0 chr3 189744491 189744616 -37779962 + MLT1F1 LTR MaLR 435 565 -2 742 219 0 0 chr3 189744661 189744798 -37779780 - FRAM SINE Alu -13 163 27 232 300 71 0 chr3 189745971 189746041 -37778537 + MLT1I LTR MaLR 130 204 -205 386 184 0 26 chr3 189746046 189746122 -37778456 + MLT1I LTR MaLR 324 397 -12 23 33 0 0 chr3 189746611 189746641 -37777937 + AT_rich Low_complexity Low_complexity 1 30 0 198 295 42 53 chr3 189746705 189746800 -37777778 - L3b LINE CR1 -182 1401 1308 21 57 0 0 chr3 189746942 189746977 -37777601 + AT_rich Low_complexity Low_complexity 1 35 0 21 0 0 0 chr3 189747156 189747177 -37777401 + AT_rich Low_complexity Low_complexity 1 21 0 1598 161 71 3 chr3 189747183 189747494 -37777084 - MER2 DNA MER2_type -10 335 4 31 82 0 0 chr3 189747656 189747729 -37776849 + AT_rich Low_complexity Low_complexity 1 73 0 339 323 0 0 chr3 189748184 189748311 -37776267 - MER103 DNA DNA -3 163 37 616 204 183 38 chr3 189748446 189748632 -37775946 - MER20 DNA MER1_type -6 213 1 5975 56 9 0 chr3 189748899 189749644 -37774934 - L1PA5 LINE L1 -2 6152 5401 1497 41 0 0 chr3 189749641 189749837 -37774741 + L1P LINE L1 5030 5225 -921 * 193 325 56 16 chr3 189749905 189750031 -37774547 + L2 LINE L2 2140 2270 -1044 654 296 63 50 chr3 189750392 189750710 -37773868 - L2 LINE L2 -1 3312 2991 1758 291 57 41 chr3 189750713 189751348 -37773230 - MLT2F LTR ERVL -2 661 17 245 389 27 13 chr3 189751382 189751531 -37773047 - L2 LINE L2 -339 2974 2824 368 267 33 33 chr3 189751677 189751797 -37772781 - MER5B DNA MER1_type 0 178 59 449 210 13 134 chr3 189752628 189752785 -37771793 + MIR SINE MIR 81 218 -44 198 143 0 0 chr3 189752813 189752848 -37771730 + (TATG)n Simple_repeat Simple_repeat 2 36 0 190 224 24 0 chr3 189752875 189752960 -37771618 + (TA)n Simple_repeat Simple_repeat 2 88 0 254 262 155 0 chr3 189753774 189753858 -37770720 - MIR3 SINE MIR -6 202 106 255 246 53 0 chr3 189754183 189754240 -37770338 + L3 LINE CR1 1149 1208 -369 2206 87 30 0 chr3 189754792 189755090 -37769488 - AluSq SINE Alu -6 307 1 487 320 47 0 chr3 189755272 189755422 -37769156 + L2 LINE L2 3116 3272 0 2299 73 3 3 chr3 189755483 189755785 -37768793 - AluY SINE Alu -9 302 1 21 0 0 0 chr3 189756025 189756046 -37768532 + AT_rich Low_complexity Low_complexity 1 21 0 431 310 70 0 chr3 189756354 189756525 -37768053 - MIR SINE MIR -3 259 77 188 325 91 0 chr3 189756895 189756972 -37767606 + MIR SINE MIR 56 139 -123 582 259 135 71 chr3 189758287 189758884 -37765694 - LTR48B LTR ERV1 0 644 4 1815 147 69 20 chr3 189760613 189760960 -37763618 + THE1B LTR MaLR 1 364 0 10955 113 6 3 chr3 189760960 189762534 -37762044 + THE1B-int LTR MaLR 1 1578 -2 2004 114 56 67 chr3 189762544 189762688 -37761890 + THE1B LTR MaLR 9 153 -211 2025 112 0 21 chr3 189762688 189763018 -37761560 - AluSx SINE Alu 0 326 3 2004 114 56 67 chr3 189763018 189763232 -37761346 + THE1B LTR MaLR 153 364 0 904 221 80 80 chr3 189763336 189763887 -37760691 + Charlie2 DNA MER1_type 2306 2856 -6 356 82 0 0 chr3 189764516 189764565 -37760013 + L1MA1 LINE L1 5423 5471 -833 345 140 0 0 chr3 189764563 189764620 -37759958 - L1M1 LINE L1 -770 5532 5476 * 2097 99 31 0 chr3 189764623 189764945 -37759633 + L1MA1 LINE L1 5971 6302 0 214 299 15 15 chr3 189765030 189765097 -37759481 - MIR SINE MIR -13 249 183 289 303 8 59 chr3 189765438 189765557 -37759021 + MIR SINE MIR 150 262 0 22 56 0 0 chr3 189765731 189765767 -37758811 + AT_rich Low_complexity Low_complexity 1 36 0 21 36 0 0 chr3 189766663 189766691 -37757887 + AT_rich Low_complexity Low_complexity 1 28 0 201 291 0 0 chr3 189766998 189767053 -37757525 + GA-rich Low_complexity Low_complexity 2 56 0 2179 110 0 0 chr3 189767154 189767445 -37757133 - AluSx SINE Alu -21 291 1 21 36 0 0 chr3 189767563 189767591 -37756987 + AT_rich Low_complexity Low_complexity 1 28 0 24 67 0 0 chr3 189767783 189767828 -37756750 + AT_rich Low_complexity Low_complexity 1 45 0 2789 288 59 71 chr3 189767849 189769557 -37755021 + HAL1 LINE L1 3 1689 -818 244 294 137 56 chr3 189769762 189770068 -37754510 + HAL1b LINE L1 164 494 -854 233 282 108 62 chr3 189770352 189770475 -37754103 - MLT1J LTR MaLR -210 301 164 1900 148 0 16 chr3 189770475 189770778 -37753800 + AluJo SINE Alu 1 298 -14 233 282 108 62 chr3 189770778 189770849 -37753729 - MLT1J LTR MaLR -347 164 98 24 77 0 0 chr3 189771354 189771406 -37753172 + AT_rich Low_complexity Low_complexity 1 52 0 209 125 0 21 chr3 189772197 189772245 -37752333 + (TATATG)n Simple_repeat Simple_repeat 2 48 0 1279 254 49 35 chr3 189772323 189772833 -37751745 - L1ME2 LINE L1 -45 6119 5598 1124 233 64 35 chr3 189773332 189773736 -37750842 - LTR52 LTR ERVL -3 418 3 218 352 56 24 chr3 189773881 189774004 -37750574 + MIR SINE MIR 29 155 -107 421 338 26 0 chr3 189774004 189774158 -37750420 + MIR SINE MIR 2 159 -103 242 321 0 0 chr3 189774697 189774778 -37749800 + MIR SINE MIR 151 231 -31 22 0 0 0 chr3 189775207 189775229 -37749349 + AT_rich Low_complexity Low_complexity 1 22 0 189 0 0 0 chr3 189775822 189775843 -37748735 + (CAAAAA)n Simple_repeat Simple_repeat 2 22 0 347 162 27 0 chr3 189777111 189777185 -37747393 + GA-rich Low_complexity Low_complexity 3 78 0 632 129 241 0 chr3 189777199 189777315 -37747263 + AluSg SINE Alu 6 149 -161 596 127 9 64 chr3 189777316 189777336 -37747242 - AluSg SINE Alu -203 107 87 6735 65 42 0 chr3 189777336 189778197 -37746381 + MER11D LTR ERVK 1 897 0 596 127 9 64 chr3 189778197 189778286 -37746292 - AluSg SINE Alu -223 87 4 23 0 0 0 chr3 189778333 189778356 -37746222 + AT_rich Low_complexity Low_complexity 1 23 0 252 254 30 0 chr3 189778955 189779022 -37745556 + L1MEd LINE L1 314 382 -5737 4480 78 0 0 chr3 189779029 189779615 -37744963 - THE1B-int LTR MaLR -994 586 1 2206 136 19 30 chr3 189779615 189779983 -37744595 - THE1B LTR MaLR 0 364 1 2048 132 0 0 chr3 189780205 189780492 -37744086 + AluSc SINE Alu 1 287 -22 4793 249 50 16 chr3 189780511 189781875 -37742703 + L1MA9 LINE L1 2448 3874 -2272 2121 132 7 0 chr3 189781875 189782185 -37742393 - AluSx SINE Alu 0 312 1 4793 249 50 16 chr3 189782185 189782405 -37742173 + L1MA9 LINE L1 3874 4085 -2061 1322 196 110 26 chr3 189782390 189782700 -37741878 + L1MA9 LINE L1 5454 5797 -515 * 258 32 0 0 chr3 189782700 189782731 -37741847 + (CA)n Simple_repeat Simple_repeat 2 32 0 1322 196 110 26 chr3 189782731 189782766 -37741812 + L1MA9 LINE L1 5797 5828 -484 1244 204 19 19 chr3 189782767 189783080 -37741498 + L1MA9 LINE L1 5990 6302 -10 1040 248 63 44 chr3 189784049 189784412 -37740166 + MLT1A2 LTR MaLR 1 370 -4 285 295 77 0 chr3 189784794 189784872 -37739706 - L2 LINE L2 -38 3234 3151 341 43 21 0 chr3 189785405 189785452 -37739126 + (TTTTC)n Simple_repeat Simple_repeat 2 49 0 2578 214 43 0 chr3 189785882 189786443 -37738135 - L1MB1 LINE L1 -280 5888 5304 1385 162 57 0 chr3 189786443 189786708 -37737870 + L1MB1 LINE L1 5889 6168 0 428 251 86 25 chr3 189786940 189787103 -37737475 + MER105 DNA DNA 1 173 -31 2049 119 3 35 chr3 189787661 189787972 -37736606 - AluSg SINE Alu -9 301 1 203 262 49 0 chr3 189788104 189788165 -37736413 + L2 LINE L2 1374 1437 -1877 318 165 0 0 chr3 189788427 189788506 -37736072 + (TA)n Simple_repeat Simple_repeat 2 80 0 289 233 0 14 chr3 189790379 189790396 -37734182 + AluSg/x SINE Alu 120 135 -167 2421 70 0 3 chr3 189790396 189790708 -37733870 + AluY SINE Alu 1 311 0 2105 132 0 0 chr3 189791609 189791904 -37732674 - AluSx SINE Alu -17 295 1 21 0 0 0 chr3 189791907 189791928 -37732650 + AT_rich Low_complexity Low_complexity 1 21 0 247 254 0 0 chr3 189791934 189792001 -37732577 - L1MA10 LINE L1 -12 6322 6256 2130 141 0 0 chr3 189792021 189792327 -37732251 - AluSx SINE Alu -6 306 1 2069 279 26 26 chr3 189792328 189793106 -37731472 - L1ME1 LINE L1 -54 6112 5335 267 259 0 0 chr3 189793209 189793294 -37731284 + (TA)n Simple_repeat Simple_repeat 1 85 0 221 225 0 0 chr3 189793299 189793339 -37731239 + (TG)n Simple_repeat Simple_repeat 2 41 0 339 61 20 0 chr3 189793490 189793539 -37731039 - L1PA16 LINE L1 -9 6157 6108 4490 172 44 13 chr3 189793539 189794593 -37729985 + L1PA16 LINE L1 5037 6117 -49 1272 277 14 18 chr3 189794589 189795088 -37729490 - L1ME1 LINE L1 -809 5337 4841 * 1596 195 11 54 chr3 189795088 189795339 -37729239 + MLT1A1 LTR MaLR 1 232 -133 2215 103 3 3 chr3 189795339 189795640 -37728938 - AluSc SINE Alu -8 301 1 1596 195 11 54 chr3 189795640 189795757 -37728821 + MLT1A1 LTR MaLR 232 353 -12 629 212 34 0 chr3 189795769 189795915 -37728663 - L1ME1 LINE L1 -1301 4845 4695 22 0 0 0 chr3 189796916 189796938 -37727640 + AT_rich Low_complexity Low_complexity 1 22 0 228 135 0 0 chr3 189797074 189797111 -37727467 + (CA)n Simple_repeat Simple_repeat 2 38 0 190 165 0 59 chr3 189797091 189797176 -37727402 + (CATATA)n Simple_repeat Simple_repeat 1 80 0 * 801 304 51 7 chr3 189797179 189797475 -37727103 + L1MEc LINE L1 123 431 -5965 12223 125 24 19 chr3 189797555 189799494 -37725084 - L1P LINE L1 -4187 1959 11 21 0 0 0 chr3 189799615 189799636 -37724942 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 189799808 189799829 -37724749 + AT_rich Low_complexity Low_complexity 1 21 0 1507 233 37 23 chr3 189800199 189800633 -37723945 + L1MB8 LINE L1 4558 4997 -1149 2177 184 77 118 chr3 189800639 189801391 -37723187 - LTR8A LTR ERV1 -6 721 1 2573 197 45 48 chr3 189801391 189802311 -37722267 + L1MB8 LINE L1 4994 5914 -264 513 177 0 0 chr3 189802438 189802534 -37722044 - L1M4 LINE L1 -424 5754 5659 1247 162 7 49 chr3 189802534 189802805 -37721773 + L1MB8 LINE L1 5901 6172 -6 35 72 0 40 chr3 189803036 189803161 -37721417 + AT_rich Low_complexity Low_complexity 1 120 0 23 0 0 0 chr3 189803527 189803550 -37721028 + AT_rich Low_complexity Low_complexity 1 23 0 1073 129 0 0 chr3 189804641 189804788 -37719790 - AluSg SINE Alu -19 293 147 4552 126 148 30 chr3 189804788 189805792 -37718786 + pTR5 LTR ERV1 743 2025 -413 362 188 62 31 chr3 189805792 189805888 -37718690 + LTR30 LTR ERV1 544 642 -80 1532 97 5 5 chr3 189805891 189806108 -37718470 + pTR5 LTR ERV1 172 388 -2050 873 156 7 0 chr3 189806108 189806243 -37718335 - AluSg SINE Alu -158 152 17 264 273 61 10 chr3 189806599 189806698 -37717880 - L1ME LINE L1 -422 5699 5596 21 0 0 0 chr3 189806977 189806998 -37717580 + AT_rich Low_complexity Low_complexity 1 21 0 219 241 17 17 chr3 189807937 189807995 -37716583 - MER5B DNA MER1_type -119 59 2 21 0 0 0 chr3 189808032 189808053 -37716525 + AT_rich Low_complexity Low_complexity 1 21 0 483 160 90 0 chr3 189808145 189808245 -37716333 + MER3 DNA MER1_type 53 161 -48 41 36 0 0 chr3 189808253 189808308 -37716270 + AT_rich Low_complexity Low_complexity 1 55 0 812 189 242 13 chr3 189808309 189808627 -37715951 + MER3 DNA MER1_type 2234 2624 0 1654 290 39 31 chr3 189808808 189809394 -37715184 - MLT1E LTR MaLR 0 593 3 292 270 84 44 chr3 189809874 189810100 -37714478 - L1M4 LINE L1 -540 5630 5396 443 345 37 49 chr3 189810142 189810467 -37714111 - L1M4 LINE L1 -786 5360 5040 648 264 238 7 chr3 189810926 189811203 -37713375 + MLT1I LTR MaLR 61 401 -8 831 301 33 18 chr3 189811253 189811529 -37713049 - MLT1I LTR MaLR -10 399 120 22 0 0 0 chr3 189812265 189812287 -37712291 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr3 189814535 189814566 -37710012 + AT_rich Low_complexity Low_complexity 1 31 0 355 344 108 0 chr3 189814668 189814863 -37709715 - L2 LINE L2 -707 2607 2392 22 35 0 0 chr3 189814913 189814942 -37709636 + AT_rich Low_complexity Low_complexity 1 29 0 298 342 114 39 chr3 189816193 189816474 -37708104 - L2 LINE L2 -789 2525 2224 1104 71 0 0 chr3 189816621 189816761 -37707817 - MER4E LTR ERV1 -626 140 1 38 0 0 0 chr3 189816796 189816834 -37707744 + AT_rich Low_complexity Low_complexity 1 38 0 242 216 0 0 chr3 189816860 189816911 -37707667 - L1M4 LINE L1 -1162 4984 4934 2468 184 103 0 chr3 189816911 189817505 -37707073 + L1 LINE L1 3094 3748 -2398 1351 203 11 39 chr3 189817735 189818021 -37706557 - AluJo SINE Alu -28 284 7 471 300 32 37 chr3 189819387 189819577 -37705001 - MLT1J LTR MaLR -322 189 1 222 237 158 13 chr3 189819938 189820014 -37704564 - L2 LINE L2 0 3272 3186 409 352 143 29 chr3 189820598 189821143 -37703435 - L2 LINE L2 -348 2966 2360 2003 102 0 0 chr3 189821289 189821554 -37703024 + AluY SINE Alu 35 299 -12 223 223 21 43 chr3 189821661 189821755 -37702823 + (TATATG)n Simple_repeat Simple_repeat 5 96 0 685 297 63 24 chr3 189821770 189822103 -37702475 - LTR52 LTR ERVL -7 414 69 2193 150 28 19 chr3 189822257 189822618 -37701960 - THE1B LTR MaLR 0 364 1 10920 122 5 0 chr3 189822618 189824190 -37700388 - THE1B-int LTR MaLR 0 1580 1 1518 172 144 28 chr3 189824190 189824516 -37700062 - THE1B LTR MaLR 0 364 1 10952 114 15 3 chr3 189824516 189826040 -37698538 + THE1B-int LTR MaLR 39 1580 0 1167 177 71 29 chr3 189826040 189826355 -37698223 + THE1B LTR MaLR 1 355 0 344 47 0 0 chr3 189826355 189826398 -37698180 - THE1B-int LTR MaLR -1537 43 1 2132 123 53 36 chr3 189826398 189826756 -37697822 - THE1B LTR MaLR 0 364 1 208 297 0 11 chr3 189826997 189827088 -37697490 + (TA)n Simple_repeat Simple_repeat 1 90 0 425 229 107 29 chr3 189827516 189827656 -37696922 + LTR40a LTR ERVL 1 151 -368 785 314 34 25 chr3 189827801 189828123 -37696455 + LTR40a LTR ERVL 180 504 -15 2242 204 131 37 chr3 189828154 189828861 -37695717 + LTR1B LTR ERV1 2 778 -7 20014 190 58 51 chr3 189828984 189833340 -37691238 + LTR1B-int LTR ERV1 250 4623 -2468 1504 192 46 11 chr3 189833340 189833621 -37690957 - AluSx SINE Alu -17 295 5 20014 190 58 51 chr3 189833621 189833718 -37690860 + LTR1B-int LTR ERV1 4623 4718 -2373 189 0 0 0 chr3 189833718 189833739 -37690839 + (TA)n Simple_repeat Simple_repeat 2 22 0 1805 113 75 17 chr3 189833739 189834032 -37690546 - MER4D LTR ERV1 -593 310 1 793 289 149 21 chr3 189834065 189834241 -37690337 - L1ME3A LINE L1 -159 6405 6253 928 228 63 0 chr3 189834241 189834447 -37690131 - MER20 DNA MER1_type 0 219 1 793 289 149 21 chr3 189834447 189834800 -37689778 - L1ME3A LINE L1 -311 6253 5808 599 271 121 16 chr3 189834927 189835292 -37689286 - L1ME3A LINE L1 -866 5674 5272 192 40 0 0 chr3 189835521 189835546 -37689032 + (TC)n Simple_repeat Simple_repeat 2 26 0 1540 161 96 37 chr3 189835637 189835991 -37688587 + THE1C LTR MaLR 1 375 0 222 127 0 55 chr3 189836257 189836312 -37688266 + (TAAAAA)n Simple_repeat Simple_repeat 5 56 0 389 173 50 50 chr3 189836776 189836955 -37687623 + (TA)n Simple_repeat Simple_repeat 1 179 0 6250 151 64 3 chr3 189836955 189838116 -37686462 - Tigger3b DNA MER2_type 0 1231 1 210 71 0 0 chr3 189838119 189838147 -37686431 + (GA)n Simple_repeat Simple_repeat 1 28 0 324 0 0 0 chr3 189838237 189838273 -37686305 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 28 48 0 0 chr3 189840485 189840527 -37684051 + AT_rich Low_complexity Low_complexity 1 42 0 21 0 0 0 chr3 189840963 189840984 -37683594 + AT_rich Low_complexity Low_complexity 1 21 0 269 336 53 53 chr3 189841513 189841778 -37682800 + MER110-int LTR ERV1 4144 4408 -239 1600 264 72 33 chr3 189842391 189843357 -37681221 - L1ME3A LINE L1 -1587 4953 3950 201 217 29 29 chr3 189843421 189843490 -37681088 + T-rich Low_complexity Low_complexity 3 71 0 580 287 55 10 chr3 189843568 189843951 -37680627 - L1ME3A LINE L1 -2897 3643 3244 760 299 121 18 chr3 189844020 189844874 -37679704 - L1ME3A LINE L1 -3417 3123 2216 231 242 11 33 chr3 189844945 189845036 -37679542 - L1ME3A LINE L1 -4512 2028 1940 1578 160 44 24 chr3 189845084 189845378 -37679200 - AluSx SINE Alu -11 301 2 302 322 82 33 chr3 189848495 189848678 -37675900 - MIR SINE MIR -6 256 65 4672 188 16 48 chr3 189849252 189849346 -37675232 + L1 LINE L1 3900 3995 -2151 807 183 0 0 chr3 189849346 189849477 -37675101 + FLAM_C SINE Alu 1 131 -2 4672 188 16 48 chr3 189849477 189850533 -37674045 + L1 LINE L1 3995 5013 -1133 1205 144 36 14 chr3 189950669 189950891 -37573687 - MLT2C2 LTR ERVL -237 227 1 22 0 0 0 chr3 189951398 189951420 -37573158 + AT_rich Low_complexity Low_complexity 1 22 0 22 35 0 0 chr3 189952342 189952371 -37572207 + AT_rich Low_complexity Low_complexity 1 29 0 303 28 0 0 chr3 189952761 189952797 -37571781 + (TG)n Simple_repeat Simple_repeat 2 37 0 229 294 9 73 chr3 189953355 189953464 -37571114 - MER58B DNA MER1_type -14 327 226 352 256 284 0 chr3 189953498 189953674 -37570904 - MER58B DNA MER1_type -115 226 1 23 78 0 0 chr3 189954121 189954172 -37570406 + AT_rich Low_complexity Low_complexity 1 51 0 2419 126 3 0 chr3 189954264 189954629 -37569949 + L1PA15 LINE L1 5800 6165 0 25 0 0 0 chr3 189955068 189955093 -37569485 + AT_rich Low_complexity Low_complexity 1 25 0 258 365 10 0 chr3 189955350 189955454 -37569124 + L2 LINE L2 3190 3294 -19 600 143 0 0 chr3 189955455 189955546 -37569032 - AluSp/q SINE Alu -24 289 199 5576 178 15 36 chr3 189955550 189957099 -37567479 + L1MA3 LINE L1 4791 6305 0 30 45 0 0 chr3 189957829 189957873 -37566705 + AT_rich Low_complexity Low_complexity 1 44 0 512 150 31 0 chr3 189958628 189958755 -37565823 + (TA)n Simple_repeat Simple_repeat 2 132 0 1326 238 0 18 chr3 189959781 189960067 -37564511 + AluJb SINE Alu 6 286 -26 369 0 0 0 chr3 189960216 189960257 -37564321 + (TG)n Simple_repeat Simple_repeat 2 42 0 25 31 0 0 chr3 189961325 189961357 -37563221 + AT_rich Low_complexity Low_complexity 1 32 0 199 341 12 0 chr3 189962327 189962412 -37562166 - MIR SINE MIR -24 238 153 246 32 0 0 chr3 189962531 189962562 -37562016 + (CA)n Simple_repeat Simple_repeat 2 32 0 1758 242 144 16 chr3 189962610 189963411 -37561167 - L1ME2 LINE L1 -170 5994 5081 1682 144 53 11 chr3 189963446 189963730 -37560848 + AluSx SINE Alu 1 296 -16 611 24 0 24 chr3 189963734 189963816 -37560762 + (GAAA)n Simple_repeat Simple_repeat 3 82 0 10365 42 4 0 chr3 189963837 189965886 -37558692 - L1PA5 LINE L1 -1 6153 4099 842 11 0 0 chr3 189965887 189965982 -37558596 + L1PA5 LINE L1 4001 4095 -2051 1254 219 29 32 chr3 189965982 189966324 -37558254 + MLT1A1 LTR MaLR 25 365 0 1801 267 99 39 chr3 189966331 189967452 -37557126 - L1ME2 LINE L1 -1075 5071 3884 1136 229 19 40 chr3 189967481 189968007 -37556571 - L1MB8 LINE L1 0 6414 5797 23 54 0 0 chr3 189968459 189968496 -37556082 + AT_rich Low_complexity Low_complexity 1 37 0 7976 266 60 21 chr3 189970196 189974378 -37550200 - L1MB8 LINE L1 -587 5827 1502 631 163 122 27 chr3 189974982 189975129 -37549449 - FRAM SINE Alu -1 175 15 202 313 60 24 chr3 189975349 189975432 -37549146 + L2 LINE L2 3190 3275 -38 249 291 25 0 chr3 189978259 189978338 -37546240 + MLT1F LTR MaLR 140 220 -329 450 256 152 35 chr3 189978401 189978631 -37545947 + MLT1F LTR MaLR 286 542 0 289 317 75 17 chr3 189980044 189980164 -37544414 + MER5A DNA MER1_type 57 183 -6 22 56 0 0 chr3 189980509 189980545 -37544033 + AT_rich Low_complexity Low_complexity 1 36 0 516 352 14 18 chr3 189980905 189981189 -37543389 - LTR33 LTR ERVL -220 301 19 826 304 88 68 chr3 189981643 189982000 -37542578 - ERVL LTR ERVL -3180 2584 2236 453 66 0 0 chr3 189982000 189982061 -37542517 + (CA)n Simple_repeat Simple_repeat 2 62 0 826 304 88 68 chr3 189982061 189982472 -37542106 - ERVL LTR ERVL -3528 2236 1800 707 343 94 23 chr3 189982498 189982968 -37541610 - LTR33 LTR ERVL 0 521 19 1272 124 5 0 chr3 189984748 189984950 -37539628 - L1PA14 LINE L1 -2 6159 5957 269 298 91 8 chr3 189985306 189985427 -37539151 - LTR16B LTR ERVL -333 131 1 616 318 38 8 chr3 189985746 189985982 -37538596 - MLT1J LTR MaLR -249 262 20 26 50 0 0 chr3 189987193 189987233 -37537345 + AT_rich Low_complexity Low_complexity 1 40 0 303 305 12 0 chr3 189987422 189987504 -37537074 - LTR16A LTR ERVL -251 199 117 289 273 37 90 chr3 189987730 189987993 -37536585 - ERVL LTR ERVL -202 5312 5091 22 0 0 0 chr3 189989616 189989638 -37534940 + AT_rich Low_complexity Low_complexity 1 22 0 325 335 140 33 chr3 189990161 189990555 -37534023 - L2 LINE L2 -1381 1933 1498 26 0 0 0 chr3 189992653 189992679 -37531899 + AT_rich Low_complexity Low_complexity 1 26 0 224 306 12 0 chr3 189994008 189994093 -37530485 + GA-rich Low_complexity Low_complexity 2 87 0 1352 172 49 24 chr3 189995184 189995500 -37529078 - MER61B LTR ERV1 -13 412 1 1164 193 49 94 chr3 189995600 189996283 -37528295 + L1P4 LINE L1 4955 5604 -570 5711 127 36 38 chr3 189996473 189997712 -37526866 + L1PA11 LINE L1 4955 6172 -2 339 305 11 52 chr3 190000925 190001099 -37523479 + MER110-int LTR ERV1 2699 2865 -1782 362 322 73 34 chr3 190001958 190002191 -37522387 + MER70-int LTR ERVL 4433 4674 -349 * 1866 274 66 10 chr3 190002100 190002723 -37521855 + MER110-int LTR ERV1 4214 4871 0 25 31 0 0 chr3 190003658 190003690 -37520888 + AT_rich Low_complexity Low_complexity 1 32 0 400 373 81 22 chr3 190004434 190004705 -37519873 - LTR16A LTR ERVL -53 397 111 414 264 39 95 chr3 190004961 190005192 -37519386 + MER20 DNA MER1_type 2 219 0 349 185 0 87 chr3 190005588 190005680 -37518898 - MER41B LTR ERV1 -88 547 464 250 297 8 55 chr3 190006616 190006744 -37517834 + L1ME LINE L1 5606 5727 -394 1281 77 6 0 chr3 190006867 190007035 -37517543 - AluYa5 SINE Alu -20 291 123 21 36 0 0 chr3 190007208 190007236 -37517342 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 190007374 190007396 -37517182 + AT_rich Low_complexity Low_complexity 1 22 0 679 271 17 0 chr3 190007693 190007874 -37516704 - MER97c DNA MER1_type? -906 184 1 4874 134 4 7 chr3 190009204 190009978 -37514600 + L1PA13 LINE L1 5392 6163 0 23 0 0 0 chr3 190010153 190010176 -37514402 + AT_rich Low_complexity Low_complexity 1 23 0 515 262 100 10 chr3 190010432 190010714 -37513864 - MLT1E LTR MaLR -5 588 201 344 330 20 0 chr3 190011628 190011728 -37512850 - MER5A DNA MER1_type -79 110 9 1667 210 16 13 chr3 190011781 190012157 -37512421 - L1PB4 LINE L1 -1 6155 5779 595 283 126 78 chr3 190012320 190012805 -37511773 - L2 LINE L2 -1430 1884 1377 199 241 176 19 chr3 190012711 190012819 -37511759 - MER5C DNA MER1_type -182 142 18 * 1860 192 18 16 chr3 190013338 190013718 -37510860 - MLT1B LTR MaLR -9 381 1 1706 114 92 0 chr3 190014342 190014614 -37509964 + AluSq SINE Alu 1 297 -16 188 286 207 50 chr3 190014644 190014784 -37509794 + L3b LINE CR1 1231 1392 -191 382 327 55 11 chr3 190015468 190015747 -37508831 + L1MC4a LINE L1 5568 5808 -313 3668 182 31 35 chr3 190016050 190016571 -37508007 - L1MA6 LINE L1 -9 6291 5773 225 0 0 0 chr3 190016571 190016596 -37507982 + (TG)n Simple_repeat Simple_repeat 2 26 0 3668 182 31 35 chr3 190016596 190016913 -37507665 - L1MA6 LINE L1 -527 5773 5456 265 189 0 0 chr3 190016993 190017046 -37507532 - L2 LINE L2 0 3313 3261 25 31 0 0 chr3 190017824 190017856 -37506722 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 190017890 190017911 -37506667 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 190018150 190018181 -37506397 + AT_rich Low_complexity Low_complexity 1 31 0 536 309 53 21 chr3 190018640 190018925 -37505653 - MER20B DNA MER1_type -467 316 23 423 98 0 0 chr3 190019020 190019081 -37505497 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 1028 243 78 23 chr3 190020410 190020756 -37503822 + MLT1A1 LTR MaLR 1 365 0 1288 198 53 9 chr3 190022605 190022990 -37501588 + MER70B LTR ERVL 1 472 0 2308 165 26 19 chr3 190024263 190024688 -37499890 + MSTA LTR MaLR 1 428 0 930 253 4 25 chr3 190025615 190025856 -37498722 + LTR40a LTR ERVL 7 242 -277 432 200 6 17 chr3 190026174 190026280 -37498298 - L1M1 LINE L1 -567 5735 5634 197 33 33 0 chr3 190026320 190026350 -37498228 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1141 248 23 0 chr3 190026360 190026626 -37497952 - AluJo SINE Alu -40 272 1 867 189 6 0 chr3 190026636 190026795 -37497783 - L1M1 LINE L1 -573 5595 5436 * 1299 193 21 57 chr3 190026790 190027122 -37497456 + L1MA10 LINE L1 6013 6332 -2 249 189 0 0 chr3 190027289 190027342 -37497236 + (CAA)n Simple_repeat Simple_repeat 3 55 0 182 348 165 26 chr3 190029192 190029543 -37495035 + L2 LINE L2 2004 2403 -911 1633 143 74 43 chr3 190029555 190030068 -37494510 + MER51A LTR ERV1 2 618 -16 34 24 0 0 chr3 190031460 190031501 -37493077 + AT_rich Low_complexity Low_complexity 1 41 0 29 94 0 0 chr3 190031741 190031826 -37492752 + AT_rich Low_complexity Low_complexity 1 85 0 26 30 0 0 chr3 190032012 190032045 -37492533 + AT_rich Low_complexity Low_complexity 1 33 0 426 20 0 0 chr3 190032054 190032105 -37492473 + (CA)n Simple_repeat Simple_repeat 2 52 0 259 281 99 0 chr3 190032849 190032970 -37491608 + HAL1 LINE L1 1650 1782 -725 222 222 0 0 chr3 190033180 190033234 -37491344 + A-rich Low_complexity Low_complexity 1 54 0 23 33 0 0 chr3 190033399 190033429 -37491149 + AT_rich Low_complexity Low_complexity 1 30 0 273 75 0 0 chr3 190033566 190033606 -37490972 + (TA)n Simple_repeat Simple_repeat 1 40 0 314 273 22 82 chr3 190033939 190034122 -37490456 + HAL1b LINE L1 758 929 -419 1993 119 19 22 chr3 190035701 190036012 -37488566 - AluSx SINE Alu -2 310 1 1227 230 77 0 chr3 190036451 190036614 -37487964 - AluJb SINE Alu -5 297 103 224 0 65 0 chr3 190036614 190036645 -37487933 + (TTTTA)n Simple_repeat Simple_repeat 2 34 0 1227 230 77 0 chr3 190036645 190036755 -37487823 - AluJb SINE Alu -199 103 3 30481 24 0 0 chr3 190036939 190041361 -37483217 + L1PA2 LINE L1 1727 6150 -5 218 200 46 0 chr3 190042925 190042990 -37481588 + (TA)n Simple_repeat Simple_repeat 1 68 0 209 415 0 0 chr3 190043053 190043159 -37481419 - L2 LINE L2 -244 3069 2964 378 0 0 0 chr3 190044408 190044450 -37480128 + (CA)n Simple_repeat Simple_repeat 2 43 0 4464 262 15 8 chr3 190044981 190046255 -37478323 - L1P LINE L1 -2027 4119 2837 22 0 0 0 chr3 190046674 190046696 -37477882 + AT_rich Low_complexity Low_complexity 1 22 0 441 360 112 33 chr3 190046702 190047274 -37477304 + HAL1 LINE L1 1181 1797 -710 22 35 0 0 chr3 190047497 190047526 -37477052 + AT_rich Low_complexity Low_complexity 1 29 0 300 326 23 47 chr3 190047550 190047722 -37476856 + HAL1b LINE L1 746 913 -435 22 35 0 0 chr3 190049547 190049576 -37475002 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr3 190050840 190050865 -37473713 + AT_rich Low_complexity Low_complexity 1 25 0 269 261 22 33 chr3 190051315 190051407 -37473171 - L1MEd LINE L1 -4862 1257 1167 259 277 128 28 chr3 190051872 190052013 -37472565 - MLT1K LTR MaLR -145 443 289 403 356 55 23 chr3 190052193 190052412 -37472166 - MLT1K LTR MaLR -361 227 2 21 36 0 0 chr3 190052465 190052493 -37472085 + AT_rich Low_complexity Low_complexity 1 28 0 764 280 76 15 chr3 190052660 190052924 -37471654 + MLT1I LTR MaLR 106 385 -24 1502 195 4 4 chr3 190052996 190053273 -37471305 + AluJb SINE Alu 6 282 -30 201 108 0 0 chr3 190053273 190053310 -37471268 + (TC)n Simple_repeat Simple_repeat 2 38 0 366 23 0 0 chr3 190053323 190053366 -37471212 + (TA)n Simple_repeat Simple_repeat 1 43 0 204 40 0 0 chr3 190053365 190053390 -37471188 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 30 59 0 0 chr3 190053406 190053457 -37471121 + AT_rich Low_complexity Low_complexity 1 51 0 35 98 0 0 chr3 190056139 190056251 -37468327 + AT_rich Low_complexity Low_complexity 1 112 0 406 302 26 105 chr3 190056842 190056939 -37467639 - MLT1I LTR MaLR -73 336 233 219 36 0 0 chr3 190056939 190056967 -37467611 + (CAAAA)n Simple_repeat Simple_repeat 3 30 0 406 302 26 105 chr3 190056967 190056997 -37467581 - MLT1I LTR MaLR -176 233 202 2243 145 31 14 chr3 190056997 190057355 -37467223 + THE1B LTR MaLR 1 364 0 9571 125 38 18 chr3 190057355 190058904 -37465674 + THE1B-int LTR MaLR 1 1580 0 1865 163 54 14 chr3 190058904 190059254 -37465324 + THE1B LTR MaLR 1 364 0 406 302 26 105 chr3 190059254 190059428 -37465150 - MLT1I LTR MaLR -204 205 56 416 150 0 10 chr3 190060369 190060469 -37464109 + (GAA)n Simple_repeat Simple_repeat 1 99 0 21 36 0 0 chr3 190060477 190060505 -37464073 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr3 190061114 190061143 -37463435 + AT_rich Low_complexity Low_complexity 1 29 0 24 77 0 0 chr3 190062166 190062218 -37462360 + AT_rich Low_complexity Low_complexity 1 52 0 21 36 0 0 chr3 190062510 190062538 -37462040 + AT_rich Low_complexity Low_complexity 1 28 0 5875 80 20 8 chr3 190062985 190063818 -37460760 + L1PA8A LINE L1 5287 6129 -2 1470 123 4 0 chr3 190063869 190064096 -37460482 + L1MA1 LINE L1 6074 6301 -1 207 0 0 0 chr3 190064236 190064259 -37460319 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2159 72 0 24 chr3 190064262 190064555 -37460023 - AluY SINE Alu -25 286 1 569 310 29 0 chr3 190064765 190064936 -37459642 + MIR SINE MIR 2 177 -85 1260 291 54 29 chr3 190064961 190065445 -37459133 + Charlie1a DNA MER1_type 8 503 -952 1364 98 11 0 chr3 190065467 190065650 -37458928 + AluSp SINE Alu 129 313 0 1307 239 84 18 chr3 190065662 190066172 -37458406 + Charlie1a DNA MER1_type 520 1063 -392 216 326 22 11 chr3 190066300 190066392 -37458186 + L2 LINE L2 3221 3313 0 460 270 87 8 chr3 190066426 190066552 -37458026 - L1MDa LINE L1 -5904 636 501 312 27 0 0 chr3 190066554 190066591 -37457987 + (TG)n Simple_repeat Simple_repeat 2 38 0 1265 135 18 165 chr3 190066689 190066932 -37457646 - pTR5 LTR ERV1 -143 2295 172 339 194 0 0 chr3 190066933 190067005 -37457573 - LTR30 LTR ERV1 -105 617 546 4043 152 80 35 chr3 190067007 190067992 -37456586 - pTR5 LTR ERV1 -433 1682 118 976 224 33 46 chr3 190067992 190068233 -37456345 - L1MDa LINE L1 -6286 254 17 372 268 0 0 chr3 190069555 190069626 -37454952 - MER5B DNA MER1_type -1 177 107 685 298 49 0 chr3 190069743 190069948 -37454630 - MIR SINE MIR -46 216 2 23 0 0 0 chr3 190070011 190070034 -37454544 + AT_rich Low_complexity Low_complexity 1 23 0 2165 118 40 35 chr3 190070363 190070736 -37453842 - THE1C LTR MaLR 0 375 1 931 225 48 14 chr3 190071458 190071876 -37452702 - MLT1D LTR MaLR -8 497 5 351 259 5 139 chr3 190072463 190072679 -37451899 - MLT1J LTR MaLR -214 297 111 759 43 0 0 chr3 190072845 190072939 -37451639 + L1PA5 LINE L1 6059 6152 -2 228 35 0 0 chr3 190074398 190074427 -37450151 + (CA)n Simple_repeat Simple_repeat 2 30 0 282 280 0 0 chr3 190075890 190075965 -37448613 - MIR SINE MIR -23 239 165 404 331 65 6 chr3 190075974 190076143 -37448435 + MIR SINE MIR 16 194 -68 328 279 25 57 chr3 190076186 190076308 -37448270 - MIR SINE MIR -51 157 40 770 161 0 0 chr3 190077264 190077382 -37447196 + AluSq/x SINE Alu 3 120 -192 607 171 51 8 chr3 190077378 190077495 -37447083 + AluSc SINE Alu 169 290 -19 * 28 29 0 0 chr3 190078873 190078908 -37445670 + AT_rich Low_complexity Low_complexity 1 35 0 819 229 99 7 chr3 190079076 190079360 -37445218 - MER33 DNA MER1_type -14 310 1 21 0 0 0 chr3 190080445 190080466 -37444112 + AT_rich Low_complexity Low_complexity 1 21 0 190 406 42 0 chr3 190080732 190080828 -37443750 - L2 LINE L2 -37 3235 3136 2292 71 17 0 chr3 190081482 190081609 -37442969 + AluY SINE Alu 1 124 -187 180 0 0 0 chr3 190081609 190081629 -37442949 + (TAAAA)n Simple_repeat Simple_repeat 2 21 0 2292 71 17 0 chr3 190081629 190081797 -37442781 + AluY SINE Alu 124 301 -10 350 252 0 8 chr3 190081809 190081936 -37442642 + (TA)n Simple_repeat Simple_repeat 1 126 0 379 318 73 73 chr3 190081980 190082379 -37442199 + MLT1I LTR MaLR 11 409 0 1271 215 90 35 chr3 190082772 190083116 -37441462 + MLT1C LTR MaLR 105 467 0 21 57 0 0 chr3 190085218 190085253 -37439325 + AT_rich Low_complexity Low_complexity 1 35 0 799 294 79 20 chr3 190085609 190085901 -37438677 - MLT2E LTR ERVL 0 628 320 525 298 95 6 chr3 190086003 190086161 -37438417 - MLT2E LTR ERVL -447 181 10 660 306 69 25 chr3 190086530 190086847 -37437731 - MLT1K LTR MaLR -30 558 228 252 245 0 0 chr3 190086888 190086937 -37437641 + MLT2B2 LTR ERVL 1 49 -466 1421 134 36 0 chr3 190086937 190087256 -37437322 - L1PA15 LINE L1 -728 5437 5110 3719 165 16 20 chr3 190087256 190087979 -37436599 + L1PA15 LINE L1 5420 6148 -17 939 283 52 10 chr3 190087986 190088350 -37436228 + MLT2B2 LTR ERVL 50 476 -39 222 37 0 0 chr3 190088350 190088377 -37436201 + (TCTA)n Simple_repeat Simple_repeat 4 30 0 293 161 0 4 chr3 190088380 190088438 -37436140 + MLT2D LTR ERVL 357 407 -7 2045 224 24 19 chr3 190088574 190089039 -37435539 + MLT1C LTR MaLR 1 467 0 1124 261 43 21 chr3 190089437 190089809 -37434769 - MLT1D LTR MaLR 0 505 126 200 336 84 28 chr3 190091920 190092027 -37432551 - L2 LINE L2 -18 3295 3183 356 270 79 34 chr3 190092229 190092407 -37432171 - LTR41 LTR ERVL -5 768 583 1623 121 83 13 chr3 190093264 190093577 -37431001 - L1MA5 LINE L1 -2 6298 5964 825 169 20 0 chr3 190093577 190093725 -37430853 + L1MA5 LINE L1 5811 5961 -339 317 294 0 22 chr3 190094684 190094776 -37429802 - L1MC4 LINE L1 -1339 6703 6614 304 316 0 21 chr3 190094692 190094787 -37429791 + L1MC4 LINE L1 6614 6706 -1336 * 189 378 8 25 chr3 190095266 190095385 -37429193 + MIR SINE MIR 17 133 -129 216 0 0 0 chr3 190095480 190095504 -37429074 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2125 119 0 0 chr3 190095507 190095801 -37428777 - AluSx SINE Alu -18 294 1 364 350 123 5 chr3 190096032 190096235 -37428343 + LTR16C LTR ERVL 265 491 0 1134 210 10 5 chr3 190097163 190097363 -37427215 - MER20 DNA MER1_type -18 201 1 267 103 0 0 chr3 190097363 190097402 -37427176 + (TATG)n Simple_repeat Simple_repeat 1 39 0 23 0 0 0 chr3 190099128 190099151 -37425427 + AT_rich Low_complexity Low_complexity 1 23 0 1915 243 38 11 chr3 190099429 190099874 -37424704 + MLT2B1 LTR ERVL 1 457 -63 342 0 0 0 chr3 190099889 190099927 -37424651 + (CA)n Simple_repeat Simple_repeat 2 39 0 24 96 0 0 chr3 190100040 190100113 -37424465 + AT_rich Low_complexity Low_complexity 1 73 0 3204 201 57 30 chr3 190100560 190101364 -37423214 - LTR1B LTR ERV1 0 826 1 186 189 0 0 chr3 190102453 190102490 -37422088 + (CATA)n Simple_repeat Simple_repeat 2 38 0 226 263 51 36 chr3 190104873 190105010 -37419568 + MER103 DNA DNA 27 165 -1 356 310 39 125 chr3 190105128 190105489 -37419089 - L2 LINE L2 0 3272 2943 607 272 120 46 chr3 190106434 190106802 -37417776 - L1MC/D LINE L1 -2031 5777 5383 295 405 59 0 chr3 190106825 190106978 -37417600 + MER91A DNA MER1_type 34 195 -1 339 318 188 19 chr3 190107150 190107662 -37416916 - L1MC/D LINE L1 -979 5167 4570 1925 146 3 20 chr3 190108463 190108764 -37415814 + AluSx SINE Alu 1 296 -16 296 289 128 69 chr3 190108825 190109043 -37415535 + L2 LINE L2 151 381 -2933 665 282 189 75 chr3 190109074 190109634 -37414944 + L2 LINE L2 1722 2345 -969 22 0 0 0 chr3 190110640 190110662 -37413916 + AT_rich Low_complexity Low_complexity 1 22 0 31 0 0 0 chr3 190110965 190110996 -37413582 + AT_rich Low_complexity Low_complexity 1 31 0 183 42 0 0 chr3 190111818 190111842 -37412736 + (A)n Simple_repeat Simple_repeat 1 24 0 21 36 0 0 chr3 190113043 190113071 -37411507 + AT_rich Low_complexity Low_complexity 1 28 0 2038 125 3 0 chr3 190114943 190115238 -37409340 + AluSg SINE Alu 4 299 -11 204 40 0 0 chr3 190115607 190115632 -37408946 + (CA)n Simple_repeat Simple_repeat 2 26 0 1633 157 63 0 chr3 190115685 190115988 -37408590 + AluSx SINE Alu 1 320 0 34 72 0 0 chr3 190116178 190116247 -37408331 + AT_rich Low_complexity Low_complexity 1 69 0 22 0 0 0 chr3 190116602 190116624 -37407954 + AT_rich Low_complexity Low_complexity 1 22 0 889 199 6 0 chr3 190117085 190117241 -37407337 - MLT1B LTR MaLR -17 373 217 480 198 0 0 chr3 190118724 190118810 -37405768 + FLAM_A SINE Alu 1 86 -56 428 237 31 0 chr3 190118851 190118978 -37405600 + FRAM SINE Alu 77 206 0 2401 70 0 0 chr3 190119087 190119387 -37405191 - AluY SINE Alu -10 301 2 213 39 0 0 chr3 190119390 190119416 -37405162 + (T)n Simple_repeat Simple_repeat 1 26 0 408 317 68 6 chr3 190119636 190119797 -37404781 + MIR SINE MIR 36 206 -56 561 144 0 0 chr3 190120060 190120157 -37404421 + L1PA8 LINE L1 6076 6172 0 1305 148 36 4 chr3 190120157 190120388 -37404190 + L1MA1 LINE L1 6045 6302 0 23 33 0 0 chr3 190120388 190120418 -37404160 + AT_rich Low_complexity Low_complexity 1 30 0 24 53 0 0 chr3 190121165 190121203 -37403375 + AT_rich Low_complexity Low_complexity 1 38 0 27 49 0 0 chr3 190121529 190121570 -37403008 + AT_rich Low_complexity Low_complexity 1 41 0 253 259 0 0 chr3 190122737 190122795 -37401783 + MLT1J LTR MaLR 123 180 -331 398 294 71 29 chr3 190123237 190123407 -37401171 + MIR SINE MIR 52 228 -34 235 377 0 0 chr3 190123549 190123618 -37400960 - L2 LINE L2 -18 3254 3186 335 77 0 19 chr3 190123749 190123801 -37400777 + (CA)n Simple_repeat Simple_repeat 2 52 0 412 256 98 14 chr3 190124547 190124832 -37399746 - Charlie2 DNA MER1_type -4 2858 2550 24 0 0 0 chr3 190125061 190125085 -37399493 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr3 190126562 190126584 -37397994 + AT_rich Low_complexity Low_complexity 1 22 0 974 192 35 0 chr3 190126831 190127034 -37397544 + MER20 DNA MER1_type 10 219 0 306 333 77 39 chr3 190127384 190127540 -37397038 + MLT1L LTR MaLR 306 467 -148 234 182 15 15 chr3 190127655 190127721 -37396857 - LTR30 LTR ERV1 -113 609 544 1677 77 0 183 chr3 190127721 190128060 -37396518 - LTR12 LTR ERV1 -437 277 1 183 42 0 0 chr3 190128173 190128197 -37396381 + (TTG)n Simple_repeat Simple_repeat 2 25 0 2056 100 4 0 chr3 190128199 190128478 -37396100 - AluSg SINE Alu -30 280 1 296 314 27 66 chr3 190128809 190128939 -37395639 + L1ME3A LINE L1 1268 1402 -4994 2325 41 3 3 chr3 190128939 190129234 -37395344 + L1PA4 LINE L1 5857 6151 -4 296 314 27 66 chr3 190129234 190129514 -37395064 + L1ME3A LINE L1 1402 1662 -4734 384 333 54 50 chr3 190129523 190129802 -37394776 + L1ME3A LINE L1 2487 2766 -3449 559 281 99 58 chr3 190129832 190130085 -37394493 + L1ME3A LINE L1 5362 5642 -597 210 91 0 0 chr3 190130085 190130118 -37394460 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 559 281 99 58 chr3 190130118 190130298 -37394280 + L1ME3A LINE L1 5642 5813 -426 766 254 49 92 chr3 190130491 190130917 -37393661 + L1ME3A LINE L1 5819 6226 -13 1232 294 81 48 chr3 190131236 190131815 -37392763 - MER90 LTR ERV1 0 614 17 7247 216 24 8 chr3 190132736 190135137 -37389441 - L1PA16 LINE L1 0 6166 3718 389 95 11 168 chr3 190135137 190135192 -37389386 - MADE1 DNA Mariner 0 80 45 1824 156 0 19 chr3 190135192 190135500 -37389078 + AluSx SINE Alu 1 302 -10 389 95 11 168 chr3 190135500 190135539 -37389039 - MADE1 DNA Mariner -35 45 1 7247 216 24 8 chr3 190135539 190135785 -37388793 - L1PA16 LINE L1 -2448 3718 3477 21 36 0 0 chr3 190136220 190136248 -37388330 + AT_rich Low_complexity Low_complexity 1 28 0 7738 131 34 22 chr3 190136292 190137541 -37387037 - THE1-int LTR MaLR -281 1299 36 227 272 54 68 chr3 190137802 190137949 -37386629 - Charlie8 DNA MER1_type -2159 258 114 339 25 0 0 chr3 190137996 190138036 -37386542 + (TCTA)n Simple_repeat Simple_repeat 3 42 0 1926 166 10 39 chr3 190138058 190138444 -37386134 - THE1C LTR MaLR 0 375 1 1785 244 31 23 chr3 190138457 190138969 -37385609 - MLT2B1 LTR ERVL 0 520 5 270 357 49 14 chr3 190138969 190139112 -37385466 + L2 LINE L2 3162 3309 -4 25 65 0 0 chr3 190139279 190139325 -37385253 + AT_rich Low_complexity Low_complexity 1 46 0 206 361 28 0 chr3 190139446 190139518 -37385060 - L2 LINE L2 -8 3264 3191 256 104 21 62 chr3 190140165 190140213 -37384365 + L2 LINE L2 3267 3312 -1 22 35 0 0 chr3 190140245 190140274 -37384304 + AT_rich Low_complexity Low_complexity 1 29 0 387 271 19 112 chr3 190140424 190140682 -37383896 - MER102a DNA MER1_type -12 318 85 2742 219 103 35 chr3 190141342 190142089 -37382489 - LTR28 LTR ERV1 -222 798 1 522 232 28 83 chr3 190142089 190142268 -37382310 + MER20 DNA MER1_type 50 218 -1 273 331 23 46 chr3 190143315 190143445 -37381133 + MIR SINE MIR 57 183 -79 26 0 0 0 chr3 190143827 190143853 -37380725 + AT_rich Low_complexity Low_complexity 1 26 0 225 94 0 0 chr3 190144481 190144513 -37380065 + (TAA)n Simple_repeat Simple_repeat 2 33 0 214 301 55 0 chr3 190144634 190144707 -37379871 - MIR SINE MIR -122 140 64 22 0 0 0 chr3 190144956 190144978 -37379600 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 190145476 190145497 -37379081 + AT_rich Low_complexity Low_complexity 1 21 0 335 313 10 0 chr3 190145543 190145642 -37378936 + L2 LINE L2 2235 2334 -980 1373 187 9 50 chr3 190145675 190145787 -37378791 - L1MB3 LINE L1 -7 6176 6061 2329 72 7 0 chr3 190145787 190146079 -37378499 + AluY SINE Alu 1 294 -17 1373 187 9 50 chr3 190146079 190146303 -37378275 - L1MB3 LINE L1 -122 6061 5854 249 222 0 0 chr3 190146352 190146415 -37378163 + (TG)n Simple_repeat Simple_repeat 2 64 0 1209 220 11 26 chr3 190146450 190146723 -37377855 - L1MB3 LINE L1 -405 5778 5510 21 0 0 0 chr3 190146891 190146912 -37377666 + AT_rich Low_complexity Low_complexity 1 21 0 2384 82 0 0 chr3 190147154 190147457 -37377121 + AluY SINE Alu 1 303 -8 187 330 12 104 chr3 190147588 190147761 -37376817 - MIR3 SINE MIR 0 208 52 1142 214 138 0 chr3 190148004 190148279 -37376299 + MER7A DNA MER2_type 35 345 -1 181 297 23 47 chr3 190148532 190148660 -37375918 + MER5C DNA MER1_type 125 249 -75 26 50 0 0 chr3 190148899 190148939 -37375639 + AT_rich Low_complexity Low_complexity 1 40 0 21 57 0 0 chr3 190149397 190149432 -37375146 + AT_rich Low_complexity Low_complexity 1 35 0 22 35 0 0 chr3 190149544 190149573 -37375005 + AT_rich Low_complexity Low_complexity 1 29 0 16588 213 44 14 chr3 190150254 190152537 -37372041 + L1M1 LINE L1 27 2238 -5327 2232 98 0 3 chr3 190152537 190152832 -37371746 + AluY SINE Alu 3 296 -15 16588 213 44 14 chr3 190152832 190153814 -37370764 + L1M1 LINE L1 2238 3188 -4377 806 78 0 9 chr3 190153814 190153930 -37370648 + (GGAA)n Simple_repeat Simple_repeat 3 117 0 16588 213 44 14 chr3 190153930 190156302 -37368276 + L1M1 LINE L1 3188 5839 -1726 1449 249 52 68 chr3 190156310 190156824 -37367754 - MLT2B3 LTR ERVL 0 554 49 5013 118 57 12 chr3 190156824 190157596 -37366982 - HERVL-A2 LTR ERVL -1940 3714 2908 2215 139 3 47 chr3 190157597 190157978 -37366600 + THE1B LTR MaLR 1 364 0 6043 125 13 8 chr3 190157978 190158897 -37365681 + THE1B-int LTR MaLR 1 924 -656 1225 150 8 81 chr3 190158917 190159164 -37365414 + THE1B LTR MaLR 136 364 0 7416 130 6 1 chr3 190159164 190160254 -37364324 - HERVL-A2 LTR ERVL -2744 2910 1815 * 8491 130 74 73 chr3 190160224 190160896 -37363682 - HERVL-A2 LTR ERVL -3989 1665 995 194 210 80 110 chr3 190160896 190160996 -37363582 - MER5C DNA MER1_type -226 98 2 8491 130 74 73 chr3 190160996 190161888 -37362690 - HERVL-A2 LTR ERVL -4659 995 1 1771 199 45 50 chr3 190161888 190162440 -37362138 - MLT2A2 LTR ERVL 0 554 3 4361 188 18 2 chr3 190162442 190163565 -37361013 + L1M1 LINE L1 5857 6998 -725 1361 26 0 0 chr3 190163570 190163724 -37360854 - AluYb8 SINE Alu -164 154 1 8808 35 1 9 chr3 190163724 190165568 -37359010 + L1PA3 LINE L1 4319 6155 0 276 247 0 37 chr3 190166333 190166414 -37358164 - L1MEc LINE L1 -6281 115 38 295 274 105 40 chr3 190166518 190166642 -37357936 - HAL1 LINE L1 -556 1951 1820 216 135 0 0 chr3 190166864 190166901 -37357677 + (T)n Simple_repeat Simple_repeat 1 37 0 681 175 15 7 chr3 190166946 190167106 -37357472 - L1 LINE L1 -1078 5068 4906 1527 27 11 0 chr3 190167114 190167301 -37357277 - L1PA4 LINE L1 0 6155 5967 431 95 0 0 chr3 190167435 190167498 -37357080 - MER53 DNA DNA -124 65 3 2044 311 65 27 chr3 190168386 190169229 -37355349 + L1M4b LINE L1 2 876 -5983 234 180 0 0 chr3 190170554 190170615 -37353963 + (CA)n Simple_repeat Simple_repeat 2 62 0 1620 156 186 16 chr3 190170722 190171088 -37353490 + MSTA LTR MaLR 1 428 0 263 341 7 7 chr3 190171491 190171626 -37352952 + MLT1I LTR MaLR 272 406 -3 478 306 27 0 chr3 190171707 190171854 -37352724 + MLT1J1 LTR MaLR 8 158 -288 1496 32 0 0 chr3 190172352 190172542 -37352036 - L1P LINE L1 -5052 1094 905 7461 37 0 0 chr3 190172542 190173758 -37350820 + L1PA3 LINE L1 4937 6152 -3 300 27 0 0 chr3 190173845 190173882 -37350696 + (TTTA)n Simple_repeat Simple_repeat 3 39 0 1948 134 0 0 chr3 190173886 190174162 -37350416 - AluSc SINE Alu -33 276 1 4065 186 13 19 chr3 190175083 190175438 -37349140 - L1MA6 LINE L1 -4 6296 5940 225 0 0 0 chr3 190175438 190175463 -37349115 + (TAAAA)n Simple_repeat Simple_repeat 1 25 0 4065 186 13 19 chr3 190175463 190175978 -37348600 - L1MA6 LINE L1 -360 5940 5432 7476 208 41 8 chr3 190176735 190178262 -37346316 + L1M1 LINE L1 21 1598 -5967 1679 226 11 6 chr3 190178266 190178628 -37345950 - L1P3 LINE L1 -5504 371 8 958 201 35 4 chr3 190178629 190178950 -37345628 - L1 LINE L1 -3782 3783 3451 * 1044 278 58 42 chr3 190178926 190179304 -37345274 - L1 LINE L1 -7170 395 12 249 274 26 18 chr3 190179449 190179562 -37345016 - L1MCc LINE L1 -5139 1284 1171 26 50 0 0 chr3 190179672 190179712 -37344866 + AT_rich Low_complexity Low_complexity 1 40 0 255 281 0 31 chr3 190180388 190180484 -37344094 - L1MCc LINE L1 -5888 534 442 592 159 25 18 chr3 190180497 190180660 -37343918 + CT-rich Low_complexity Low_complexity 3 166 0 308 300 114 9 chr3 190180730 190180950 -37343628 + L1ME3A LINE L1 5912 6154 -16 211 167 30 0 chr3 190181081 190181147 -37343431 + (TA)n Simple_repeat Simple_repeat 2 69 0 24 0 0 0 chr3 190181523 190181547 -37343031 + AT_rich Low_complexity Low_complexity 1 24 0 191 225 14 0 chr3 190182084 190182155 -37342423 + (TA)n Simple_repeat Simple_repeat 2 73 0 246 196 71 0 chr3 190183645 190183701 -37340877 - L1 LINE L1 -1793 4353 4294 25 65 0 0 chr3 190183889 190183935 -37340643 + AT_rich Low_complexity Low_complexity 1 46 0 2076 218 19 52 chr3 190184098 190184616 -37339962 - MER67D LTR ERV1 0 514 14 14688 104 4 1 chr3 190185802 190187954 -37336624 - L1PA7 LINE L1 -951 5195 3039 6365 87 7 5 chr3 190187954 190188881 -37335697 + L1PA7 LINE L1 5219 6147 -7 1075 279 82 31 chr3 190189311 190189897 -37334681 + MLT1E2 LTR MaLR 1 601 -25 407 192 0 0 chr3 190190034 190190112 -37334466 + MER116 DNA Mariner 3 80 0 1895 102 0 138 chr3 190190885 190191239 -37333339 + AluSg SINE Alu 3 307 -3 2711 30 21 0 chr3 190191348 190191677 -37332901 - L1P2 LINE L1 -440 5714 5379 817 31 0 0 chr3 190191677 190191765 -37332813 + L1PA5 LINE L1 6051 6147 -7 24 0 0 0 chr3 190191765 190191789 -37332789 + AT_rich Low_complexity Low_complexity 1 24 0 2488 62 0 3 chr3 190192430 190192738 -37331840 - AluY SINE Alu -1 310 4 198 303 160 0 chr3 190193506 190193625 -37330953 - MIR SINE MIR -4 258 121 191 347 42 28 chr3 190193634 190193706 -37330872 + MER5A DNA MER1_type 108 180 -9 270 333 36 0 chr3 190195210 190195321 -37329257 - MIR SINE MIR -5 257 143 25 0 0 0 chr3 190195345 190195370 -37329208 + AT_rich Low_complexity Low_complexity 1 25 0 2215 86 3 29 chr3 190195664 190195978 -37328600 - AluSg SINE Alu -4 306 1 201 39 0 0 chr3 190196085 190196111 -37328467 + (TTGG)n Simple_repeat Simple_repeat 2 27 0 289 325 26 26 chr3 190197465 190197582 -37326996 + MIR3 SINE MIR 77 193 -15 198 71 0 0 chr3 190197834 190197862 -37326716 + (CAAAC)n Simple_repeat Simple_repeat 3 30 0 1163 160 117 71 chr3 190198025 190198307 -37326271 + AluJo SINE Alu 5 299 -3 2200 119 0 6 chr3 190198367 190198679 -37325899 - AluSx SINE Alu 0 312 3 233 266 47 0 chr3 190198722 190198786 -37325792 + CT-rich Low_complexity Low_complexity 1 67 0 2768 158 10 3 chr3 190199537 190200185 -37324393 - L1P5 LINE L1 -473 5678 5023 7368 215 24 25 chr3 190200221 190200571 -37324007 - L1PBb LINE L1 -2107 4096 3747 381 22 0 0 chr3 190200571 190200617 -37323961 + (TTG)n Simple_repeat Simple_repeat 3 48 0 7368 215 24 25 chr3 190200617 190202196 -37322382 - L1PBb LINE L1 -2456 3747 2178 2104 117 0 3 chr3 190202196 190202487 -37322091 - AluSg SINE Alu -20 290 1 7368 215 24 25 chr3 190202487 190204058 -37320520 - L1PBb LINE L1 -4025 2178 606 12620 110 10 2 chr3 190204058 190206031 -37318547 - L1P3 LINE L1 -710 5462 3476 3791 107 18 0 chr3 190206032 190206632 -37317946 + L1P3 LINE L1 2855 3465 -2681 1826 267 130 43 chr3 190206627 190207271 -37317307 - L1M4 LINE L1 -1230 4916 4330 * 2198 114 0 0 chr3 190207271 190207569 -37317009 - AluSx SINE Alu -14 298 1 1826 267 130 43 chr3 190207569 190208496 -37316082 - L1M4 LINE L1 -1816 4330 3207 254 268 0 0 chr3 190208518 190208600 -37315978 + L1MC4 LINE L1 6621 6702 -1340 2268 94 0 3 chr3 190208600 190208899 -37315679 - AluSp SINE Alu -15 298 1 26 30 0 0 chr3 190209615 190209648 -37314930 + AT_rich Low_complexity Low_complexity 1 33 0 539 321 88 15 chr3 190210186 190210663 -37313915 - L1MC/D LINE L1 -2001 5807 5296 191 381 32 24 chr3 190211173 190211299 -37313279 + L2 LINE L2 3184 3310 -3 1633 183 19 11 chr3 190211529 190211896 -37312682 - L1MA4 LINE L1 -1 6299 5930 1001 41 8 0 chr3 190211896 190212017 -37312561 - L1P LINE L1 -6018 128 7 25 0 0 0 chr3 190212156 190212181 -37312397 + AT_rich Low_complexity Low_complexity 1 25 0 236 331 0 8 chr3 190212801 190212925 -37311653 + (TA)n Simple_repeat Simple_repeat 1 123 0 21 0 0 0 chr3 190213298 190213319 -37311259 + AT_rich Low_complexity Low_complexity 1 21 0 11918 156 47 44 chr3 190213505 190215881 -37308697 - Tigger1 DNA MER2_type -3 2415 33 21 71 0 0 chr3 190216208 190216250 -37308328 + AT_rich Low_complexity Low_complexity 1 42 0 22 35 0 0 chr3 190216668 190216697 -37307881 + AT_rich Low_complexity Low_complexity 1 29 0 290 317 0 0 chr3 190216747 190216828 -37307750 - MIR SINE MIR -93 115 43 23 0 0 0 chr3 190217084 190217107 -37307471 + AT_rich Low_complexity Low_complexity 1 23 0 1261 335 85 32 chr3 190217694 190218860 -37305718 - MERVL LTR ERVL -2397 3088 1861 23 0 0 0 chr3 190219189 190219212 -37305366 + AT_rich Low_complexity Low_complexity 1 23 0 1122 153 228 0 chr3 190219212 190219453 -37305125 - AluJb SINE Alu -6 296 1 2452 55 0 10 chr3 190219865 190220174 -37304404 + AluY SINE Alu 1 306 -5 263 303 101 10 chr3 190220752 190220851 -37303727 - MIR SINE MIR -64 144 37 810 182 0 0 chr3 190220974 190221106 -37303472 - FLAM_C SINE Alu 0 133 2 363 308 77 14 chr3 190221790 190221933 -37302645 - MIR SINE MIR -64 198 47 584 108 0 0 chr3 190222834 190222917 -37301661 + L1MA3 LINE L1 5874 5956 -349 28 61 0 0 chr3 190222965 190223014 -37301564 + AT_rich Low_complexity Low_complexity 1 49 0 236 176 0 59 chr3 190223094 190223145 -37301433 - L2 LINE L2 -4 3309 3262 246 333 23 17 chr3 190224824 190224998 -37299580 + L1ME LINE L1 1344 1518 -5341 2443 267 68 25 chr3 190225018 190225652 -37298926 + L1ME LINE L1 4961 5566 -1411 3788 113 6 90 chr3 190225652 190226377 -37298201 - MER4A LTR ERV1 0 664 1 2443 267 68 25 chr3 190226377 190227235 -37297343 + L1ME LINE L1 5566 6512 -465 210 128 0 0 chr3 190227245 190227284 -37297294 + (TC)n Simple_repeat Simple_repeat 2 40 0 3838 145 9 10 chr3 190227353 190228035 -37296543 - L1PA11 LINE L1 0 6174 5494 13886 187 22 11 chr3 190228526 190231679 -37292899 - L1P3 LINE L1 -404 5750 2565 867 299 29 61 chr3 190232364 190232989 -37291589 - L2 LINE L2 -2 3311 2722 329 331 7 36 chr3 190233184 190233323 -37291255 - MER117 DNA MER1_type -55 142 8 2699 146 108 51 chr3 190233426 190234227 -37290351 + pTR5 LTR ERV1 741 2025 -413 315 224 31 20 chr3 190234227 190234325 -37290253 + LTR30 LTR ERV1 544 642 -80 1613 71 5 9 chr3 190234328 190234552 -37290026 + pTR5 LTR ERV1 172 394 -2044 7570 190 52 19 chr3 190235107 190237391 -37287187 + L1MA3 LINE L1 10 3040 -4525 1377 220 4 0 chr3 190237395 190237654 -37286924 + AluSx SINE Alu 1 260 -52 1107 86 11 11 chr3 190237689 190237864 -37286714 + (GAAA)n Simple_repeat Simple_repeat 4 178 0 12352 192 30 13 chr3 190237893 190238230 -37286348 + L1MA3 LINE L1 3059 3389 -4335 182 37 37 0 chr3 190238230 190238257 -37286321 + (CA)n Simple_repeat Simple_repeat 1 28 0 12352 192 30 13 chr3 190238257 190239911 -37284667 + L1MA3 LINE L1 3389 5013 -2711 189 0 0 0 chr3 190239911 190239932 -37284646 + (TAAA)n Simple_repeat Simple_repeat 4 24 0 12352 192 30 13 chr3 190239932 190242517 -37282061 + L1MA3 LINE L1 5013 7724 0 2604 219 44 11 chr3 190242579 190243233 -37281345 - L1MC3 LINE L1 -1 7784 7109 391 209 81 0 chr3 190243238 190243324 -37281254 + MLT1B LTR MaLR 281 373 -17 237 281 0 12 chr3 190243339 190243421 -37281157 + (TATATG)n Simple_repeat Simple_repeat 2 82 0 494 232 66 61 chr3 190243433 190243614 -37280964 + L1MC3 LINE L1 6048 6229 -1556 * 1306 210 145 102 chr3 190243606 190244292 -37280286 - L1MC3 LINE L1 -299 6045 5854 2329 45 14 0 chr3 190244733 190245022 -37279556 + AluY SINE Alu 1 293 -18 203 261 23 8 chr3 190246052 190246182 -37278396 + (TA)n Simple_repeat Simple_repeat 1 132 0 314 339 143 17 chr3 190247557 190247858 -37276720 + L1ME LINE L1 4735 5073 -1073 594 290 55 20 chr3 190247901 190248441 -37276137 + L1ME LINE L1 5149 5746 -375 251 309 63 48 chr3 190249177 190249572 -37275006 - HAL1 LINE L1 -1232 1275 875 250 291 39 97 chr3 190250091 190250297 -37274281 - HAL1 LINE L1 -2295 212 19 24 85 0 0 chr3 190250388 190250447 -37274131 + AT_rich Low_complexity Low_complexity 1 59 0 2988 157 123 8 chr3 190250468 190251111 -37273467 - L1MA8 LINE L1 -4 6287 5571 223 245 21 0 chr3 190251330 190251424 -37273154 + (TATG)n Simple_repeat Simple_repeat 1 96 0 997 315 80 30 chr3 190251424 190252266 -37272312 - HAL1 LINE L1 -211 2296 1413 1599 152 31 14 chr3 190252378 190252667 -37271911 - AluJb SINE Alu -18 294 1 341 366 38 14 chr3 190252686 190252899 -37271679 - HAL1 LINE L1 -2082 425 208 29 28 0 0 chr3 190253062 190253098 -37271480 + AT_rich Low_complexity Low_complexity 1 36 0 313 324 71 28 chr3 190253161 190253343 -37271235 - HAL1b LINE L1 -999 349 160 2190 214 54 157 chr3 190253588 190254806 -37269772 + MER52A LTR ERV1 663 1755 0 22 0 0 0 chr3 190254864 190254886 -37269692 + AT_rich Low_complexity Low_complexity 1 22 0 1477 173 102 43 chr3 190255199 190255592 -37268986 - MLT2C2 LTR ERVL -48 416 1 5735 157 78 16 chr3 190255649 190255902 -37268676 - Tigger3b DNA MER2_type -1797 1231 995 612 230 16 0 chr3 190255902 190256028 -37268550 + FLAM_A SINE Alu 3 130 -3 5735 157 78 16 chr3 190256028 190256920 -37267658 - Tigger3b DNA MER2_type -2033 995 14 27 0 0 0 chr3 190257515 190257542 -37267036 + AT_rich Low_complexity Low_complexity 1 27 0 49 18 0 0 chr3 190258063 190258119 -37266459 + AT_rich Low_complexity Low_complexity 1 56 0 331 331 20 13 chr3 190258177 190258328 -37266250 + MLT1H LTR MaLR 1 152 -397 345 255 34 3 chr3 190258548 190258650 -37265928 + MLT1H LTR MaLR 440 533 -16 1710 188 50 9 chr3 190258729 190259069 -37265509 - THE1C LTR MaLR 0 375 22 269 20 80 0 chr3 190259204 190259254 -37265324 + (TA)n Simple_repeat Simple_repeat 1 54 0 2406 60 0 3 chr3 190261238 190261539 -37263039 + AluY SINE Alu 1 300 -11 195 42 0 0 chr3 190261539 190261563 -37263015 + (TA)n Simple_repeat Simple_repeat 2 25 0 344 343 62 45 chr3 190261579 190261821 -37262757 + MLT1I LTR MaLR 34 279 -130 23 33 0 0 chr3 190262438 190262468 -37262110 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr3 190263057 190263080 -37261498 + AT_rich Low_complexity Low_complexity 1 23 0 273 136 11 125 chr3 190263090 190263178 -37261400 - HsTC2 DNA Tc2 -2 1896 1819 565 304 26 10 chr3 190263346 190263540 -37261038 + L1MEd LINE L1 426 622 -5497 332 218 35 11 chr3 190263567 190263654 -37260924 - HsTC2 DNA Tc2 -1808 90 2 207 219 0 0 chr3 190263756 190263797 -37260781 + (TAA)n Simple_repeat Simple_repeat 2 42 0 277 292 100 0 chr3 190263809 190263929 -37260649 - MIR SINE MIR -11 251 120 612 167 17 0 chr3 190264815 190264935 -37259643 - L1MB4 LINE L1 -7 6173 6052 3687 137 20 17 chr3 190265002 190265635 -37258943 - MER41B LTR ERV1 0 635 1 1172 313 179 16 chr3 190266122 190266824 -37257754 + L2 LINE L2 140 956 -2358 916 125 0 0 chr3 190266901 190267064 -37257514 - AluSg/x SINE Alu 0 312 172 1572 296 139 88 chr3 190267133 190269330 -37255248 + L2 LINE L2 944 3260 -53 2441 30 40 0 chr3 190269330 190269629 -37254949 + AluY SINE Alu 1 311 0 1572 296 139 88 chr3 190269629 190269686 -37254892 + L2 LINE L2 3260 3313 0 226 239 30 45 chr3 190270352 190270419 -37254159 + L1MC4 LINE L1 6770 6835 -1207 * 264 109 43 0 chr3 190270415 190270461 -37254117 - L1M3 LINE L1 -566 5617 5570 590 167 8 17 chr3 190270462 190270582 -37253996 + L1MA8 LINE L1 6169 6287 -4 308 234 0 0 chr3 190270612 190270676 -37253902 + L1MD3 LINE L1 6798 6861 -1134 345 226 83 75 chr3 190271254 190271387 -37253191 - MLT1I LTR MaLR -3 406 273 196 376 35 65 chr3 190273214 190273384 -37251194 + L2 LINE L2 3035 3199 -73 26 50 0 0 chr3 190273844 190273884 -37250694 + AT_rich Low_complexity Low_complexity 1 40 0 207 0 0 0 chr3 190274168 190274191 -37250387 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 25 31 0 0 chr3 190274637 190274669 -37249909 + AT_rich Low_complexity Low_complexity 1 32 0 415 324 47 14 chr3 190275774 190275987 -37248591 - MIR SINE MIR -4 258 39 311 260 0 48 chr3 190276064 190276168 -37248410 + L1MC4 LINE L1 6604 6702 -1340 3889 222 19 4 chr3 190276205 190276975 -37247603 + ERVL LTR ERVL 2592 3373 -2391 8571 189 59 24 chr3 190276979 190278291 -37246287 + ERVL LTR ERVL 3829 5221 -543 1432 225 65 29 chr3 190278291 190278673 -37245905 - MSTD LTR MaLR 0 396 1 8571 189 59 24 chr3 190278673 190279144 -37245434 + ERVL LTR ERVL 5221 5674 -90 21 0 0 0 chr3 190280022 190280043 -37244535 + AT_rich Low_complexity Low_complexity 1 21 0 190 328 45 67 chr3 190281791 190281925 -37242653 + MIR SINE MIR 11 141 -121 231 88 0 0 chr3 190281951 190281985 -37242593 + (TG)n Simple_repeat Simple_repeat 2 35 0 25 31 0 0 chr3 190282628 190282660 -37241918 + AT_rich Low_complexity Low_complexity 1 32 0 281 322 87 38 chr3 190283163 190283346 -37241232 + L2 LINE L2 3122 3313 0 494 158 0 3 chr3 190283498 190283733 -37240845 + AluSx SINE Alu 1 303 -6 308 228 7 125 chr3 190284909 190285045 -37239533 - L1MC4 LINE L1 -1340 6702 6583 27 62 0 0 chr3 190285091 190285139 -37239439 + AT_rich Low_complexity Low_complexity 1 48 0 32 0 0 0 chr3 190285190 190285222 -37239356 + AT_rich Low_complexity Low_complexity 1 32 0 132 58 0 0 chr3 190285979 190286202 -37238376 + AT_rich Low_complexity Low_complexity 1 223 0 231 367 51 23 chr3 190286982 190287159 -37237419 + L2 LINE L2 2507 2688 -626 261 57 0 0 chr3 190287174 190287209 -37237369 + (TG)n Simple_repeat Simple_repeat 2 36 0 681 194 40 17 chr3 190287333 190287508 -37237070 + L1MA2 LINE L1 13 191 -7374 256 0 50 25 chr3 190287510 190287550 -37237028 + (CAAAA)n Simple_repeat Simple_repeat 2 42 0 12315 180 25 63 chr3 190287571 190291108 -37233470 + L1MA2 LINE L1 1048 4472 -3093 515 209 1 0 chr3 190291134 190291243 -37233335 + L1MA2 LINE L1 4693 4802 -2763 * 6169 187 20 15 chr3 190291239 190291919 -37232659 + L1MA2 LINE L1 5290 5965 -1758 2112 112 17 85 chr3 190291919 190292321 -37232257 + THE1C LTR MaLR 1 375 0 6169 187 20 15 chr3 190292321 190292756 -37231822 + L1MA2 LINE L1 5965 6397 -1326 2110 126 3 0 chr3 190292756 190293058 -37231520 + AluSp SINE Alu 1 303 -10 6169 187 20 15 chr3 190293058 190294357 -37230221 + L1MA2 LINE L1 6397 7717 -6 734 270 63 25 chr3 190294375 190294654 -37229924 + L1ME1 LINE L1 5812 6101 -65 33 43 0 0 chr3 190294668 190294715 -37229863 + AT_rich Low_complexity Low_complexity 1 47 0 213 39 0 0 chr3 190296365 190296391 -37228187 + (TG)n Simple_repeat Simple_repeat 2 27 0 238 356 48 0 chr3 190296706 190296852 -37227726 - L3 LINE CR1 -312 1265 1113 24 53 0 0 chr3 190297543 190297581 -37226997 + AT_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr3 190297690 190297721 -37226857 + AT_rich Low_complexity Low_complexity 1 31 0 2687 224 177 18 chr3 190298690 190299486 -37225092 + MER52A LTR ERV1 1 923 -832 1131 126 77 0 chr3 190299488 190299670 -37224908 - AluSx SINE Alu -116 196 1 187 31 62 0 chr3 190299904 190299936 -37224642 + T-rich Low_complexity Low_complexity 2 35 0 1378 193 47 25 chr3 190299938 190300212 -37224366 - AluSx SINE Alu -32 280 1 181 73 24 24 chr3 190300213 190300254 -37224324 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 39 0 0 0 chr3 190301243 190301282 -37223296 + AT_rich Low_complexity Low_complexity 1 39 0 310 153 0 47 chr3 190301929 190302014 -37222564 + CT-rich Low_complexity Low_complexity 3 83 0 208 385 41 25 chr3 190302281 190302525 -37222053 + L2 LINE L2 2250 2497 -817 227 229 0 0 chr3 190303574 190303622 -37220956 - L2 LINE L2 -3 3310 3263 332 301 119 21 chr3 190304282 190304518 -37220060 - MIR SINE MIR -1 261 3 2427 44 0 66 chr3 190304917 190305236 -37219342 - AluY SINE Alu -13 298 1 188 119 0 24 chr3 190306414 190306456 -37218122 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 26 0 0 0 chr3 190306569 190306595 -37217983 + AT_rich Low_complexity Low_complexity 1 26 0 1117 241 78 28 chr3 190307836 190308197 -37216381 - L1MD2 LINE L1 -3 6356 5978 206 177 0 32 chr3 190308257 190308319 -37216259 + CT-rich Low_complexity Low_complexity 2 61 0 274 250 0 0 chr3 190308701 190308765 -37215813 + L1ME LINE L1 5524 5587 -575 5401 140 25 4 chr3 190308791 190310105 -37214473 - L1PA15 LINE L1 0 6165 4834 2469 88 128 5 chr3 190310107 190310506 -37214072 - LTR7 LTR ERV1 -2 448 1 2254 111 48 13 chr3 190310506 190310883 -37213695 - HERVH LTR ERV1 0 7713 7324 1385 126 23 0 chr3 190310883 190311098 -37213480 - HERVH LTR ERV1 -1894 5819 5600 4440 139 3 1 chr3 190311099 190311768 -37212810 - HERVH LTR ERV1 -2564 5149 4480 * 19315 86 38 21 chr3 190311764 190315520 -37209058 - HERVH LTR ERV1 -3720 3993 1 2412 103 128 5 chr3 190315522 190315921 -37208657 - LTR7 LTR ERV1 -2 448 1 3167 202 14 47 chr3 190315921 190316690 -37207888 - L1PA15 LINE L1 -1308 4838 4095 201 259 19 0 chr3 190317329 190317383 -37207195 + CT-rich Low_complexity Low_complexity 3 57 0 218 250 0 17 chr3 190318032 190318092 -37206486 + GA-rich Low_complexity Low_complexity 2 60 0 736 211 43 77 chr3 190318122 190318330 -37206248 + MER20 DNA MER1_type 2 202 -17 253 242 113 0 chr3 190318328 190318390 -37206188 - 5S rRNA rRNA -33 88 20 * 617 160 83 0 chr3 190318396 190318540 -37206038 + L1MA9 LINE L1 6157 6312 0 512 280 18 60 chr3 190318624 190318842 -37205736 - MER63A DNA MER1_type -1 209 1 225 361 71 13 chr3 190318984 190319139 -37205439 + L2 LINE L2 2597 2760 -554 24104 148 17 25 chr3 190319675 190323179 -37201399 + L1PA8A LINE L1 14 3493 -2953 2273 70 42 0 chr3 190323179 190323465 -37201113 - AluY SINE Alu -13 298 1 24104 148 17 25 chr3 190323465 190326394 -37198184 + L1PA8A LINE L1 3493 6446 0 3341 191 8 21 chr3 190327090 190327192 -37197386 + L1M1 LINE L1 14 116 -7449 2497 54 0 32 chr3 190327192 190327508 -37197070 + AluY SINE Alu 1 306 -5 3341 191 8 21 chr3 190327508 190328027 -37196551 + L1M1 LINE L1 116 627 -6938 638 57 0 11 chr3 190328051 190328139 -37196439 + AluSg/x SINE Alu 219 305 -4 4769 83 18 5 chr3 190328140 190329043 -37195535 + L1PA7 LINE L1 5020 5936 -218 * 8771 206 15 11 chr3 190329037 190331249 -37193329 - L1M1 LINE L1 -743 6822 4647 3338 171 8 27 chr3 190331230 190331825 -37192753 - L1M1 LINE L1 -5382 2183 1600 * 284 163 0 0 chr3 190331815 190331864 -37192714 - L1MD3 LINE L1 -300 7695 7647 * 621 181 16 0 chr3 190331862 190331989 -37192589 - L1MB5 LINE L1 -257 5917 5789 47 19 0 0 chr3 190332042 190332096 -37192482 + AT_rich Low_complexity Low_complexity 1 54 0 688 122 0 0 chr3 190332566 190332664 -37191914 - THE1B LTR MaLR 0 364 267 228 122 0 0 chr3 190333082 190333123 -37191455 + (TG)n Simple_repeat Simple_repeat 2 42 0 22 0 0 0 chr3 190334376 190334398 -37190180 + AT_rich Low_complexity Low_complexity 1 22 0 266 339 85 27 chr3 190335135 190335359 -37189219 + MIR SINE MIR 20 256 -6 23 33 0 0 chr3 190335973 190336003 -37188575 + AT_rich Low_complexity Low_complexity 1 30 0 306 0 0 0 chr3 190336969 190337003 -37187575 + (CA)n Simple_repeat Simple_repeat 2 35 0 805 212 54 30 chr3 190338407 190338502 -37186076 + MER6B DNA MER2_type 2 93 -772 1730 161 122 3 chr3 190338502 190338837 -37185741 - THE1C LTR MaLR 0 375 1 805 212 54 30 chr3 190338837 190338944 -37185634 + MER6B DNA MER2_type 93 209 -1 28 29 0 0 chr3 190339834 190339869 -37184709 + AT_rich Low_complexity Low_complexity 1 35 0 2318 142 25 3 chr3 190340229 190340596 -37183982 - THE1C LTR MaLR 0 375 1 9666 140 32 8 chr3 190340601 190342139 -37182439 - THE1C-int LTR MaLR -5 1575 1 2082 143 19 26 chr3 190342139 190342517 -37182061 - THE1C LTR MaLR 0 375 1 738 261 32 44 chr3 190342721 190343210 -37181368 + L1MEc LINE L1 2110 2550 -3665 440 218 109 19 chr3 190343223 190343379 -37181199 + L1MD3 LINE L1 7818 7987 -8 884 240 44 48 chr3 190343433 190343846 -37180732 + L1MEc LINE L1 2581 2991 -3224 411 284 58 14 chr3 190343847 190344195 -37180383 + L1MEc LINE L1 3102 3464 -2751 * 866 305 67 30 chr3 190344164 190344840 -37179738 + L1M4 LINE L1 3075 3775 -2440 2332 212 66 114 chr3 190344950 190345743 -37178835 + L1MCa LINE L1 591 1420 -5537 2220 66 63 0 chr3 190345743 190346029 -37178549 + AluY SINE Alu 1 304 -7 2332 212 66 114 chr3 190346029 190346390 -37178188 + L1MCa LINE L1 1420 1796 -5161 1559 215 67 6 chr3 190346390 190346734 -37177844 - MLT1A1 LTR MaLR 0 365 1 2332 212 66 114 chr3 190346734 190347074 -37177504 + L1MCa LINE L1 1796 1773 -5184 2743 20 0 0 chr3 190347074 190347378 -37177200 + AluY SINE Alu 1 304 -7 2332 212 66 114 chr3 190347378 190347774 -37176804 + L1MCa LINE L1 1772 2185 -4772 1164 218 23 129 chr3 190347768 190348141 -37176437 + L1M4 LINE L1 946 1357 -5502 * 1526 110 5 0 chr3 190348141 190348360 -37176218 + L1PB1 LINE L1 5925 6144 -7 246 32 0 0 chr3 190348363 190348394 -37176184 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1164 218 23 129 chr3 190348394 190348489 -37176089 + L1M4 LINE L1 1359 1368 -5491 2271 99 0 7 chr3 190348489 190348793 -37175785 - AluSc SINE Alu -7 302 1 366 78 0 0 chr3 190348804 190348855 -37175723 - Alu SINE Alu -2 298 248 306 0 0 0 chr3 190348872 190348906 -37175672 + (CAA)n Simple_repeat Simple_repeat 2 35 0 330 143 0 43 chr3 190348907 190348977 -37175601 + L1M4 LINE L1 1382 1448 -5411 1314 260 35 43 chr3 190349044 190349710 -37174868 + L1M4 LINE L1 3418 4077 -2880 * 4985 226 49 37 chr3 190349703 190349907 -37174671 + L1M4 LINE L1 4321 4521 -2474 525 32 0 0 chr3 190349907 190349970 -37174608 + (GAAA)n Simple_repeat Simple_repeat 2 64 0 4985 226 49 37 chr3 190349970 190351951 -37172627 + L1M4 LINE L1 4521 6531 -464 645 185 8 0 chr3 190351951 190352070 -37172508 + AluSp/q SINE Alu 176 295 -18 217 357 39 31 chr3 190352169 190352298 -37172280 + L2 LINE L2 3158 3287 -26 333 249 195 0 chr3 190352400 190352569 -37172009 + LTR50 LTR ERVL 9 210 -585 295 246 142 22 chr3 190352691 190352825 -37171753 + LTR50 LTR ERVL 487 636 -159 1945 161 0 0 chr3 190353175 190353485 -37171093 + AluSx SINE Alu 2 311 -1 475 293 103 47 chr3 190354598 190355178 -37169400 - MLT1G1 LTR MaLR -2 593 1 185 274 0 20 chr3 190355414 190355465 -37169113 + L2 LINE L2 3219 3268 -4 304 325 13 13 chr3 190355565 190355722 -37168856 - LTR16B LTR ERVL -12 452 296 2123 114 3 7 chr3 190355936 190356234 -37168344 - AluSx SINE Alu -15 297 1 207 0 0 0 chr3 190356500 190356523 -37168055 + (TG)n Simple_repeat Simple_repeat 2 24 0 765 115 0 0 chr3 190356820 190356933 -37167645 - L1 LINE L1 -1316 4830 4718 852 121 0 0 chr3 190356933 190357049 -37167529 - AluSc SINE Alu -87 222 107 1751 224 23 50 chr3 190357052 190357609 -37166969 - L1 LINE L1 -1437 4709 4168 * 2656 211 14 12 chr3 190357604 190358577 -37166001 + L1P5 LINE L1 4831 5806 -350 472 273 60 13 chr3 190358689 190358839 -37165739 - LTR52 LTR ERVL -264 157 1 1376 237 40 34 chr3 190358847 190359227 -37165351 - LTR52-int LTR ERVL -8 3548 3167 352 121 76 0 chr3 190359246 190359312 -37165266 - LTR52 LTR ERVL -350 71 1 412 208 69 35 chr3 190359994 190360138 -37164440 - L1MB8 LINE L1 0 6178 6030 1078 179 5 0 chr3 190360143 190360338 -37164240 + L1MC1 LINE L1 6131 6326 -7 478 287 115 32 chr3 190361138 190362018 -37162560 + L1ME LINE L1 1343 2177 -4782 31 58 0 0 chr3 190362314 190362366 -37162212 + AT_rich Low_complexity Low_complexity 1 52 0 941 228 88 28 chr3 190364463 190364713 -37159865 - AluJb SINE Alu -47 265 1 21 0 0 0 chr3 190364805 190364826 -37159752 + AT_rich Low_complexity Low_complexity 1 21 0 4877 199 32 8 chr3 190365110 190366468 -37158110 - L1MA4 LINE L1 -3 6479 5102 677 210 0 7 chr3 190366458 190366596 -37157982 - MSTB1-int LTR MaLR -1514 137 1 * 2046 205 14 9 chr3 190366596 190367026 -37157552 - MSTB1 LTR MaLR 0 432 1 1569 241 52 7 chr3 190367026 190367486 -37157092 - L1MA4 LINE L1 -3433 2895 2415 404 204 11 0 chr3 190367508 190367601 -37156977 - AluSg SINE Alu -6 306 213 1445 149 5 5 chr3 190367726 190367947 -37156631 - AluSg SINE Alu -89 221 1 5506 224 37 24 chr3 190367947 190370348 -37154230 - L1MA4 LINE L1 -3899 2429 14 1787 194 25 33 chr3 190370885 190371251 -37153327 + MLT1A1 LTR MaLR 3 365 0 1551 272 44 39 chr3 190371328 190372079 -37152499 + L1M4 LINE L1 4236 4990 -1156 317 319 71 39 chr3 190372169 190372351 -37152227 + MIR SINE MIR 19 206 -56 561 328 54 8 chr3 190372366 190372607 -37151971 - MIR SINE MIR -10 252 1 522 123 38 9 chr3 190372795 190372901 -37151677 + CT-rich Low_complexity Low_complexity 1 109 0 244 269 166 83 chr3 190375338 190375628 -37148950 + L3 LINE CR1 803 1116 -461 393 273 8 41 chr3 190375628 190375749 -37148829 - MER94 DNA DNA -17 117 1 27 29 0 0 chr3 190376407 190376441 -37148137 + AT_rich Low_complexity Low_complexity 1 34 0 1485 185 40 13 chr3 190376798 190377100 -37147478 + AluJo SINE Alu 3 312 0 2214 76 3 10 chr3 190377100 190377439 -37147139 + AluY SINE Alu 1 311 0 506 174 0 43 chr3 190378450 190378542 -37146036 - MER67A LTR ERV1 -455 88 1 3208 154 50 29 chr3 190378580 190379177 -37145401 - MER4D LTR ERV1 -17 886 277 1856 194 47 3 chr3 190379203 190379589 -37144989 + MER57A LTR ERV1 1 403 0 4175 156 38 28 chr3 190379591 190380953 -37143625 + MER57A-int LTR ERV1 3 1451 -4495 * 4270 144 38 7 chr3 190380944 190381664 -37142914 + MER57A-int LTR ERV1 2218 2959 -4578 1104 153 11 10 chr3 190381675 190381967 -37142611 - MER4B LTR ERV1 -15 595 261 538 130 0 93 chr3 190381967 190382075 -37142503 - MER4A LTR ERV1 -566 98 1 487 157 0 11 chr3 190382075 190382164 -37142414 + MER57A-int LTR ERV1 2953 3040 -4497 * 3340 121 99 3 chr3 190382147 190382711 -37141867 + MER57A-int LTR ERV1 3153 3770 -3767 831 170 7 13 chr3 190382703 190382856 -37141722 + MER57A-int LTR ERV1 5607 5758 -1779 * 8755 110 36 46 chr3 190383212 190384038 -37140540 + MER57A-int LTR ERV1 5737 6570 -967 3722 79 6 0 chr3 190384038 190384544 -37140034 + L1PA6 LINE L1 5633 6141 -13 8755 110 36 46 chr3 190384544 190384557 -37140021 + MER57A-int LTR ERV1 6570 6582 -955 243 0 0 0 chr3 190384557 190384584 -37139994 + (TAA)n Simple_repeat Simple_repeat 1 27 0 8755 110 36 46 chr3 190384584 190385167 -37139411 + MER57A-int LTR ERV1 6582 7146 -391 662 138 23 31 chr3 190385167 190385297 -37139281 + LTR54B LTR ERV1 3 131 -367 740 143 200 0 chr3 190385297 190385437 -37139141 + MER57A-int LTR ERV1 7279 7446 -91 1275 26 0 0 chr3 190385440 190385593 -37138985 - L1P LINE L1 -875 5271 5119 348 91 73 0 chr3 190385694 190385749 -37138829 + MER57A-int LTR ERV1 7088 7146 -391 537 150 47 31 chr3 190385749 190385876 -37138702 + LTR54B LTR ERV1 3 131 -367 702 144 209 0 chr3 190385876 190386015 -37138563 + MER57A-int LTR ERV1 7279 7446 -91 17735 35 1 1 chr3 190386018 190388186 -37136392 - L1PA4 LINE L1 -875 5271 3102 7365 26 2 0 chr3 190388186 190389057 -37135521 + L1PA4 LINE L1 5281 6155 0 506 88 0 0 chr3 190389066 190389134 -37135444 + MER57A-int LTR ERV1 7465 7532 -5 1728 214 10 38 chr3 190389150 190389547 -37135031 + MER57A LTR ERV1 14 399 -4 1216 147 24 9 chr3 190389561 190389772 -37134806 - MER4D LTR ERV1 -689 214 1 21 36 0 0 chr3 190389851 190389879 -37134699 + AT_rich Low_complexity Low_complexity 1 28 0 2452 233 15 37 chr3 190389985 190390581 -37133997 + MER67B LTR ERV1 79 661 0 415 183 49 0 chr3 190390650 190390732 -37133846 - MIR SINE MIR -102 160 75 508 294 75 32 chr3 190390851 190391038 -37133540 + MIR SINE MIR 36 230 -32 1518 199 44 25 chr3 190391038 190391404 -37133174 + THE1C LTR MaLR 1 373 -2 23 54 0 0 chr3 190392601 190392638 -37131940 + AT_rich Low_complexity Low_complexity 1 37 0 218 301 27 27 chr3 190393299 190393372 -37131206 + MER5A DNA MER1_type 67 139 -50 250 168 23 38 chr3 190394863 190394941 -37129637 + (TA)n Simple_repeat Simple_repeat 1 79 -407 2047 137 31 20 chr3 190394941 190395298 -37129280 + THE1B LTR MaLR 4 364 0 250 168 23 38 chr3 190395298 190395357 -37129221 + (TA)n Simple_repeat Simple_repeat 79 486 0 * 315 0 0 0 chr3 190395356 190395391 -37129187 + (TG)n Simple_repeat Simple_repeat 2 36 0 310 374 0 0 chr3 190395446 190395537 -37129041 - MIR SINE MIR -88 120 30 330 341 48 8 chr3 190397176 190397302 -37127276 + MIR SINE MIR 98 228 -34 289 138 25 0 chr3 190397578 190397658 -37126920 + (TA)n Simple_repeat Simple_repeat 1 82 0 910 204 0 16 chr3 190397805 190397991 -37126587 - AluJb SINE Alu -9 303 121 27 0 0 0 chr3 190398512 190398539 -37126039 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr3 190399427 190399448 -37125130 + AT_rich Low_complexity Low_complexity 1 21 0 311 257 28 0 chr3 190399746 190399855 -37124723 + (TA)n Simple_repeat Simple_repeat 2 113 0 693 317 63 67 chr3 190400235 190401118 -37123460 + ERVL LTR ERVL 4548 4923 -73 749 339 26 16 chr3 190401164 190401477 -37123101 + LTR16B LTR ERVL 1 316 -148 1237 114 4 121 chr3 190401595 190401825 -37122753 + L1MA2 LINE L1 6038 6293 -11 243 0 0 0 chr3 190401825 190401852 -37122726 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1653 137 88 0 chr3 190401854 190402117 -37122461 - AluSx SINE Alu -26 286 1 1237 114 4 121 chr3 190402117 190402164 -37122414 + L1MA2 LINE L1 6234 6285 -19 212 130 22 0 chr3 190402423 190402469 -37122109 + (ATG)n Simple_repeat Simple_repeat 2 48 0 731 167 0 7 chr3 190403282 190403426 -37121152 - L1MA3 LINE L1 0 6305 6163 3079 104 33 7 chr3 190403426 190403879 -37120699 + L1PA10 LINE L1 5692 6163 -5 2317 168 46 42 chr3 190403891 190404410 -37120168 - L1MA4 LINE L1 -143 6157 5637 1923 176 17 37 chr3 190404420 190404830 -37119748 + L1MA4 LINE L1 5254 5655 -650 34 24 0 0 chr3 190405512 190405553 -37119025 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr3 190405703 190405727 -37118851 + AT_rich Low_complexity Low_complexity 1 24 0 184 325 75 50 chr3 190405799 190405959 -37118619 - L2 LINE L2 -146 3167 3004 1391 270 45 59 chr3 190406126 190406836 -37117742 - Charlie7 DNA MER1_type -1890 722 23 21 0 0 0 chr3 190407711 190407732 -37116846 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 190408468 190408489 -37116089 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 190408725 190408756 -37115822 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 190410294 190410316 -37114262 + AT_rich Low_complexity Low_complexity 1 22 0 1514 195 17 10 chr3 190410403 190410705 -37113873 + AluJb SINE Alu 1 304 -8 301 286 0 13 chr3 190412389 190412466 -37112112 + LTR16A LTR ERVL 88 163 -287 874 287 94 13 chr3 190412676 190413070 -37111508 + ERVL LTR ERVL 22 447 -4549 279 275 14 0 chr3 190413133 190413202 -37111376 + ERVL LTR ERVL 1026 1095 -3901 397 264 47 72 chr3 190413206 190413399 -37111179 + MLT1D LTR MaLR 1 188 -317 1172 167 40 14 chr3 190414994 190415216 -37109362 + MLT1D LTR MaLR 276 503 -2 433 233 10 10 chr3 190415302 190415405 -37109173 - Tigger1 DNA MER2_type -14 2404 2302 847 251 32 5 chr3 190415408 190415627 -37108951 + L1PA16 LINE L1 5942 6166 0 11409 157 44 8 chr3 190415628 190417799 -37106779 - Tigger1 DNA MER2_type -105 2313 35 2396 303 40 45 chr3 190417971 190419308 -37105270 + ERVL LTR ERVL 1492 2810 -2186 577 334 66 40 chr3 190419339 190419982 -37104596 + ERVL LTR ERVL 2949 3685 -2000 302 222 0 0 chr3 190420118 190420181 -37104397 + L1PA13 LINE L1 4584 4646 -1500 1003 130 0 0 chr3 190420182 190420328 -37104250 - AluSg/x SINE Alu -10 302 157 6088 98 4 11 chr3 190420328 190421105 -37103473 + L1PA13 LINE L1 4659 5429 -734 2185 120 3 0 chr3 190421105 190421404 -37103174 + AluSx SINE Alu 1 300 -12 6088 98 4 11 chr3 190421404 190422135 -37102443 + L1PA13 LINE L1 5429 6163 0 267 316 35 0 chr3 190422136 190422250 -37102328 + ERVL LTR ERVL 3829 3946 -1708 285 270 16 0 chr3 190422445 190422508 -37102070 + L2 LINE L2 3200 3263 -9 1869 199 54 11 chr3 190424246 190424688 -37099890 + MER65C LTR ERV1 1 461 0 402 71 143 0 chr3 190424862 190424932 -37099646 - MADE1 DNA Mariner 0 80 1 223 346 109 30 chr3 190425422 190425523 -37099055 - L2 LINE L2 -21 3251 3143 613 335 97 36 chr3 190425638 190426166 -37098412 - L2 LINE L2 -338 2976 2417 2402 112 8 22 chr3 190426714 190427079 -37097499 + THE1B LTR MaLR 5 364 0 9270 135 27 42 chr3 190427079 190427536 -37097042 + THE1B-int LTR MaLR 1 463 -1117 2502 33 17 0 chr3 190427536 190427837 -37096741 + AluY SINE Alu 1 306 -5 9270 135 27 42 chr3 190427837 190428983 -37095595 + THE1B-int LTR MaLR 463 1580 0 2319 146 0 6 chr3 190428983 190429347 -37095231 + THE1B LTR MaLR 1 362 -2 21 0 0 0 chr3 190430750 190430771 -37093807 + AT_rich Low_complexity Low_complexity 1 21 0 22 70 0 0 chr3 190431794 190431837 -37092741 + AT_rich Low_complexity Low_complexity 1 43 0 431 279 14 7 chr3 190432846 190432993 -37091585 + MER103 DNA DNA 9 156 -10 938 89 0 0 chr3 190433077 190433200 -37091378 - AluSg/x SINE Alu -12 300 178 1159 141 0 0 chr3 190433203 190433373 -37091205 + AluSx SINE Alu 11 180 -132 204 40 0 0 chr3 190434737 190434762 -37089816 + (T)n Simple_repeat Simple_repeat 1 25 0 409 300 0 17 chr3 190435241 190435361 -37089217 + 7SK RNA RNA 6 123 -70 951 212 0 0 chr3 190436001 190436180 -37088398 + AluSx SINE Alu 1 179 -133 455 325 120 0 chr3 190436967 190437158 -37087420 - MIR SINE MIR -29 233 20 209 83 28 0 chr3 190437580 190437616 -37086962 + (TATAA)n Simple_repeat Simple_repeat 2 38 0 22 35 0 0 chr3 190437768 190437797 -37086781 + AT_rich Low_complexity Low_complexity 1 29 0 660 188 104 84 chr3 190438458 190438660 -37085918 + MLT1D LTR MaLR 3 208 -297 374 219 0 0 chr3 190438660 190438733 -37085845 + MLT1D LTR MaLR 411 483 -22 222 333 67 25 chr3 190439247 190439367 -37085211 + MER5A DNA MER1_type 60 184 -5 373 224 0 27 chr3 190439713 190439896 -37084682 + (TATG)n Simple_repeat Simple_repeat 3 180 0 451 274 81 78 chr3 190439951 190440395 -37084183 - L1MC4 LINE L1 -1219 6589 6246 2031 147 19 33 chr3 190440395 190440762 -37083816 + THE1B LTR MaLR 1 362 -2 451 274 81 78 chr3 190440762 190440942 -37083636 - L1MC4 LINE L1 -1562 6246 6068 309 308 0 50 chr3 190441061 190441243 -37083335 - L1M4 LINE L1 -2169 3977 3805 538 222 49 167 chr3 190441284 190441572 -37083006 + MER21B LTR ERV1 40 293 -570 3035 146 27 27 chr3 190441673 190442220 -37082358 - LTR10A LTR ERV1 -62 547 1 1541 263 19 24 chr3 190442264 190442641 -37081937 + L1MA2 LINE L1 88 462 -7103 322 255 27 11 chr3 190442644 190442754 -37081824 + L1MA2 LINE L1 4248 4367 -3198 5606 166 29 32 chr3 190442766 190444408 -37080170 + L1MA2 LINE L1 6089 7717 -6 595 251 74 49 chr3 190444578 190444821 -37079757 + MER21B LTR ERV1 466 714 -149 2741 224 5 8 chr3 190444825 190445455 -37079123 - L1 LINE L1 -970 5176 4549 11909 207 81 23 chr3 190445458 190447426 -37077152 - L1MA1 LINE L1 0 7721 5868 1864 152 0 39 chr3 190447426 190447735 -37076843 - AluSx SINE Alu -15 297 1 11909 207 81 23 chr3 190447735 190452252 -37072326 - L1MA1 LINE L1 -1853 5868 847 1607 198 39 15 chr3 190452252 190452585 -37071993 + MSTB LTR MaLR 86 426 0 636 197 0 8 chr3 190452586 190452708 -37071870 - L1 LINE L1 -2290 3856 3736 271 223 151 42 chr3 190452691 190452932 -37071646 - L1MCa LINE L1 -4859 1186 944 * 515 254 95 27 chr3 190453142 190453543 -37071035 - L1MEc LINE L1 -5219 1177 750 21 57 0 0 chr3 190453749 190453784 -37070794 + AT_rich Low_complexity Low_complexity 1 35 0 240 342 44 35 chr3 190454290 190454404 -37070174 + L2 LINE L2 3127 3241 -31 29 90 0 0 chr3 190454449 190454527 -37070051 + AT_rich Low_complexity Low_complexity 1 78 0 189 0 0 0 chr3 190455000 190455021 -37069557 + (TTTA)n Simple_repeat Simple_repeat 4 24 0 1965 119 4 0 chr3 190455021 190455298 -37069280 - AluSg SINE Alu -32 278 1 2431 254 183 31 chr3 190455722 190456842 -37067736 + L1MC4 LINE L1 6510 7829 -213 2003 64 0 12 chr3 190456842 190457091 -37067487 - AluY SINE Alu -15 296 51 2431 254 183 31 chr3 190457091 190457181 -37067397 + L1MC4 LINE L1 7829 7904 -138 22 0 0 0 chr3 190458265 190458287 -37066291 + AT_rich Low_complexity Low_complexity 1 22 0 2771 157 39 35 chr3 190458716 190459288 -37065290 + MER4B LTR ERV1 1 574 -36 412 278 70 51 chr3 190461089 190461402 -37063176 + MER110A LTR ERV1 32 350 -118 205 268 18 0 chr3 190462024 190462080 -37062498 + MIR SINE MIR 97 153 -109 1196 241 88 57 chr3 190462474 190462964 -37061614 - MLT1D LTR MaLR 0 505 1 302 336 38 66 chr3 190463516 190463570 -37061008 + MIR SINE MIR 55 109 -153 2089 92 10 3 chr3 190463570 190463863 -37060715 + AluY SINE Alu 5 299 -12 302 336 38 66 chr3 190463863 190464019 -37060559 + MIR SINE MIR 109 259 -3 21 36 0 0 chr3 190464667 190464695 -37059883 + AT_rich Low_complexity Low_complexity 1 28 0 36 0 0 0 chr3 190465376 190465412 -37059166 + AT_rich Low_complexity Low_complexity 1 36 0 6224 226 69 28 chr3 190465715 190467262 -37057316 - MER52A LTR ERV1 -144 1611 1 226 209 0 0 chr3 190468240 190468283 -37056295 + CT-rich Low_complexity Low_complexity 4 46 0 1338 171 38 60 chr3 190468340 190468557 -37056021 + Cheshire DNA MER1_type 2052 2259 -161 1521 199 58 21 chr3 190468557 190468933 -37055645 + MLT1B LTR MaLR 1 390 0 1338 171 38 60 chr3 190468933 190469083 -37055495 + Cheshire DNA MER1_type 2259 2411 -9 35 41 0 0 chr3 190470220 190470269 -37054309 + AT_rich Low_complexity Low_complexity 1 49 0 344 234 24 32 chr3 190470388 190470512 -37054066 + GA-rich Low_complexity Low_complexity 4 126 0 1070 206 84 58 chr3 190470610 190470955 -37053623 - MLT1A1 LTR MaLR -11 354 1 24 0 0 0 chr3 190471368 190471392 -37053186 + AT_rich Low_complexity Low_complexity 1 24 0 915 203 72 0 chr3 190471685 190471892 -37052686 + L1MA3 LINE L1 6081 6302 -3 192 188 0 0 chr3 190472344 190472408 -37052170 + (TAA)n Simple_repeat Simple_repeat 1 64 0 21 0 0 0 chr3 190472517 190472538 -37052040 + AT_rich Low_complexity Low_complexity 1 21 0 210 37 0 0 chr3 190472714 190472741 -37051837 + (TG)n Simple_repeat Simple_repeat 1 27 0 572 274 33 43 chr3 190472841 190473261 -37051317 + L1M4 LINE L1 3073 3488 -2658 28 48 0 0 chr3 190474035 190474077 -37050501 + AT_rich Low_complexity Low_complexity 1 42 0 387 0 0 0 chr3 190474961 190475004 -37049574 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 413 211 40 59 chr3 190475020 190475172 -37049406 + L1MC5 LINE L1 7347 7495 -466 23 24 0 24 chr3 190475696 190475713 -37048865 + AT_rich Low_complexity Low_complexity 1 17 -23 17483 35 5 0 chr3 190475713 190478623 -37045955 + L1PA4 LINE L1 3231 6155 0 23 24 0 24 chr3 190478623 190478646 -37045932 + AT_rich Low_complexity Low_complexity 17 40 0 208 284 305 0 chr3 190478694 190478789 -37045789 - L2 LINE L2 -7 3306 3183 34 24 0 0 chr3 190479198 190479239 -37045339 + AT_rich Low_complexity Low_complexity 1 41 0 31 92 0 0 chr3 190479519 190479606 -37044972 + AT_rich Low_complexity Low_complexity 1 87 0 23 0 0 0 chr3 190479690 190479713 -37044865 + AT_rich Low_complexity Low_complexity 1 23 0 25 65 0 0 chr3 190479923 190479969 -37044609 + AT_rich Low_complexity Low_complexity 1 46 0 25 0 0 0 chr3 190480065 190480090 -37044488 + AT_rich Low_complexity Low_complexity 1 25 0 505 294 82 6 chr3 190480730 190480900 -37043678 + MIR SINE MIR 6 188 -74 25 51 0 0 chr3 190480914 190480953 -37043625 + AT_rich Low_complexity Low_complexity 1 39 0 21 36 0 0 chr3 190480974 190481002 -37043576 + AT_rich Low_complexity Low_complexity 1 28 0 180 290 58 0 chr3 190481264 190481333 -37043245 - MIR SINE MIR -71 191 119 29 28 0 0 chr3 190481682 190481718 -37042860 + AT_rich Low_complexity Low_complexity 1 36 0 42945 51 2 1 chr3 190481783 190487913 -37036665 - L1PA4 LINE L1 -3 6152 15 1543 182 0 42 chr3 190487913 190488226 -37036352 - AluJo SINE Alu -12 300 1 324 346 88 0 chr3 190488603 190488762 -37035816 - MIR SINE MIR 0 262 90 422 262 24 0 chr3 190489108 190489234 -37035344 + MER94 DNA DNA 4 132 -2 534 45 0 0 chr3 190489345 190489412 -37035166 - L1P LINE L1 -735 5419 5353 6008 39 0 24 chr3 190489412 190490164 -37034414 + L1PA5 LINE L1 5420 6154 0 219 293 66 19 chr3 190490727 190490833 -37033745 - MIR SINE MIR 0 262 152 8651 137 34 7 chr3 190490854 190492195 -37032383 + THE1B-int LTR MaLR 204 1580 0 2426 140 0 3 chr3 190492195 190492559 -37032019 + THE1B LTR MaLR 1 363 -1 1108 150 33 11 chr3 190492561 190492741 -37031837 - LTR28 LTR ERV1 -836 184 1 30 27 0 0 chr3 190493004 190493041 -37031537 + AT_rich Low_complexity Low_complexity 1 37 0 200 274 61 67 chr3 190494080 190494244 -37030334 + L2 LINE L2 1919 2081 -1233 454 328 62 31 chr3 190494249 190494569 -37030009 + L2 LINE L2 2040 2369 -945 245 397 45 19 chr3 190494857 190495013 -37029565 + L2 LINE L2 2701 2860 -454 510 61 0 0 chr3 190495294 190495360 -37029218 + (TA)n Simple_repeat Simple_repeat 2 67 0 21 36 0 0 chr3 190496045 190496073 -37028505 + AT_rich Low_complexity Low_complexity 1 28 0 328 297 73 41 chr3 190496488 190496860 -37027718 - L1MC/D LINE L1 -864 5282 5072 29 90 0 0 chr3 190496862 190496940 -37027638 + AT_rich Low_complexity Low_complexity 1 78 0 489 280 173 42 chr3 190496951 190497287 -37027291 - MLT1I LTR MaLR -4 405 26 453 245 95 20 chr3 190497911 190498058 -37026520 + L1MA9 LINE L1 6130 6287 -25 307 195 35 11 chr3 190498245 190498332 -37026246 - L1MC/D LINE L1 -1488 4658 4570 249 195 0 0 chr3 190498546 190498587 -37025991 - MER4A LTR ERV1 -60 604 564 2078 118 0 16 chr3 190501241 190501546 -37023032 - AluSq SINE Alu -12 301 2 1122 170 209 0 chr3 190502328 190502587 -37021991 - L1MB1 LINE L1 -14 6154 5842 1974 125 0 0 chr3 190502610 190502889 -37021689 + AluSx SINE Alu 1 279 -33 191 88 29 0 chr3 190502889 190502923 -37021655 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 308 326 79 11 chr3 190502929 190503107 -37021471 - HAL1 LINE L1 -48 2459 2270 397 130 280 0 chr3 190503437 190503537 -37021041 - AluJb SINE Alu -56 246 119 1644 169 4 7 chr3 190503557 190503836 -37020742 - AluSx SINE Alu -32 280 3 432 338 159 24 chr3 190504291 190504705 -37019873 - HAL1 LINE L1 -741 1766 1297 1774 182 51 33 chr3 190504713 190505257 -37019321 + MLT2A2 LTR ERVL 1 546 -8 270 196 20 0 chr3 190505327 190505378 -37019200 + Tigger1 DNA MER2_type 2 53 -2365 4801 163 51 20 chr3 190505378 190506298 -37018280 + Tigger1 DNA MER2_type 1470 2418 0 23 54 0 0 chr3 190507389 190507426 -37017152 + AT_rich Low_complexity Low_complexity 1 37 0 1756 64 4 8 chr3 190508486 190508720 -37015858 - L1PA7 LINE L1 -12 6142 5910 4613 71 3 2 chr3 190508720 190509328 -37015250 + L1PA7 LINE L1 5300 5908 -246 276 329 45 45 chr3 190509810 190509965 -37014613 - MIR3 SINE MIR -31 177 23 265 335 62 34 chr3 190510259 190510438 -37014140 + L2 LINE L2 3130 3313 0 4167 209 110 40 chr3 190511302 190512007 -37012571 + L1MC2 LINE L1 3696 4350 -1994 2147 75 0 3 chr3 190512007 190512329 -37012249 + AluY SINE Alu 1 321 0 4167 209 110 40 chr3 190512329 190513944 -37010634 + L1MC2 LINE L1 4350 6200 -144 583 301 11 27 chr3 190513980 190514166 -37010412 - MER74B LTR ERVL -393 229 47 240 292 45 0 chr3 190515059 190515148 -37009430 - L2 LINE L2 0 3313 3221 1888 71 4 0 chr3 190515151 190515404 -37009174 - L1PA7 LINE L1 -1 6153 5900 2231 60 40 3 chr3 190515404 190515704 -37008874 - AluY SINE Alu 0 311 1 4068 200 75 50 chr3 190515716 190516812 -37007766 - L1MC3 LINE L1 -187 7598 6476 806 265 94 68 chr3 190516818 190517274 -37007304 - L1MCb LINE L1 -5373 672 205 358 308 41 105 chr3 190517457 190517801 -37006777 - L2 LINE L2 -627 2687 2366 30 0 0 0 chr3 190518156 190518186 -37006392 + AT_rich Low_complexity Low_complexity 1 30 0 23 33 0 0 chr3 190518416 190518446 -37006132 + AT_rich Low_complexity Low_complexity 1 30 0 1863 145 3 13 chr3 190519449 190519752 -37004826 - AluSx SINE Alu -12 300 1 396 0 0 0 chr3 190519783 190519827 -37004751 + (TG)n Simple_repeat Simple_repeat 1 44 0 341 325 96 6 chr3 190519998 190520155 -37004423 + MIR SINE MIR 78 248 -14 25 0 0 0 chr3 190520393 190520418 -37004160 + AT_rich Low_complexity Low_complexity 1 25 0 7490 199 55 19 chr3 190521115 190523915 -37000663 + L1PA16 LINE L1 3236 6133 -33 23 33 0 0 chr3 190524397 190524427 -37000151 + AT_rich Low_complexity Low_complexity 1 30 0 34 24 0 0 chr3 190525912 190525953 -36998625 + AT_rich Low_complexity Low_complexity 1 41 0 218 229 26 52 chr3 190526012 190526165 -36998413 + (TTATA)n Simple_repeat Simple_repeat 5 153 0 * 242 270 44 15 chr3 190526071 190526208 -36998370 + (TATATG)n Simple_repeat Simple_repeat 4 144 0 345 273 73 9 chr3 190526604 190526714 -36997864 - MIR SINE MIR -80 182 66 397 293 110 6 chr3 190526727 190526891 -36997687 + MIR SINE MIR 49 229 -33 469 238 75 103 chr3 190527299 190527887 -36996691 - MLT1H1 LTR MaLR -8 547 1 349 373 32 14 chr3 190527988 190528208 -36996370 - L1ME4a LINE L1 -281 5840 5617 22 35 0 0 chr3 190529295 190529324 -36995254 + AT_rich Low_complexity Low_complexity 1 29 0 2137 116 0 3 chr3 190529585 190529878 -36994700 + AluSq SINE Alu 1 292 -21 23 0 0 0 chr3 190529879 190529902 -36994676 + AT_rich Low_complexity Low_complexity 1 23 0 217 132 0 0 chr3 190530473 190530511 -36994067 + (TAAA)n Simple_repeat Simple_repeat 2 39 0 364 340 69 13 chr3 190531049 190531208 -36993370 - MIR3 SINE MIR -5 203 36 201 94 0 0 chr3 190531390 190531422 -36993156 + (TG)n Simple_repeat Simple_repeat 2 33 0 300 270 117 31 chr3 190532638 190532801 -36991777 - MIR SINE MIR -5 257 81 219 288 44 75 chr3 190533479 190533578 -36991000 + L2 LINE L2 751 845 -2469 2096 127 48 23 chr3 190533578 190533932 -36990646 - THE1B LTR MaLR -1 363 1 219 288 44 75 chr3 190533932 190533992 -36990586 + L2 LINE L2 845 905 -2409 21 100 0 0 chr3 190534342 190534412 -36990166 + AT_rich Low_complexity Low_complexity 1 70 0 25 0 0 0 chr3 190535936 190535961 -36988617 + AT_rich Low_complexity Low_complexity 1 25 0 184 213 128 0 chr3 190536416 190536463 -36988115 + MIR SINE MIR 207 259 -3 457 323 64 53 chr3 190536715 190537074 -36987504 - MLT1J1 LTR MaLR -7 439 77 22 0 0 0 chr3 190537286 190537308 -36987270 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr3 190538115 190538147 -36986431 + AT_rich Low_complexity Low_complexity 1 32 0 342 61 0 0 chr3 190538283 190538332 -36986246 + (CA)n Simple_repeat Simple_repeat 2 50 0 23 78 0 0 chr3 190539525 190539576 -36985002 + AT_rich Low_complexity Low_complexity 1 51 0 282 308 93 33 chr3 190540807 190541109 -36983469 - L1MEd LINE L1 -4882 1237 918 251 244 61 17 chr3 190541132 190541247 -36983331 - L1MEd LINE L1 -5242 877 758 21 36 0 0 chr3 190543055 190543083 -36981495 + AT_rich Low_complexity Low_complexity 1 28 0 47 44 0 0 chr3 190543150 190543218 -36981360 + AT_rich Low_complexity Low_complexity 1 68 0 24 0 0 0 chr3 190543429 190543453 -36981125 + AT_rich Low_complexity Low_complexity 1 24 0 22 56 0 0 chr3 190543714 190543750 -36980828 + AT_rich Low_complexity Low_complexity 1 36 0 3379 222 11 30 chr3 190544000 190544747 -36979831 + L1PA16 LINE L1 1 733 -6116 11338 235 35 20 chr3 190545220 190550434 -36974144 + L1PA16 LINE L1 1432 6852 -17 257 284 15 0 chr3 190550951 190551018 -36973560 + HERV16 LTR ERVL 600 667 -4329 726 90 54 0 chr3 190551508 190551619 -36972959 - L1MA9 LINE L1 -394 5918 5802 1789 186 35 20 chr3 190551619 190552018 -36972560 + L1MA9 LINE L1 5899 6308 -4 813 338 34 14 chr3 190552020 190552369 -36972209 + HERV16 LTR ERVL 1066 1421 -3575 475 340 20 10 chr3 190552651 190552848 -36971730 + HERV16 LTR ERVL 1841 2039 -2957 348 229 127 21 chr3 190552877 190553045 -36971533 + HERV16 LTR ERVL 2110 2302 -2694 2397 98 0 0 chr3 190553075 190553381 -36971197 - AluY SINE Alu -5 306 1 996 363 30 23 chr3 190553405 190554142 -36970436 + HERV16 LTR ERVL 2364 3072 -1924 508 385 3 0 chr3 190554688 190554976 -36969602 + HERV16 LTR ERVL 4106 4394 -1260 1805 185 31 40 chr3 190555018 190555576 -36969002 - MLT2A2 LTR ERVL 0 554 1 258 302 28 0 chr3 190555842 190555948 -36968630 + HERV16 LTR ERVL 4728 4836 -649 3767 210 21 12 chr3 190556063 190557373 -36967205 - L1PB4 LINE L1 -4 6152 4831 1577 228 21 48 chr3 190557368 190557925 -36966653 + L1 LINE L1 4168 4709 -1437 * 1331 131 0 11 chr3 190557928 190558119 -36966459 + AluSg/x SINE Alu 109 297 -15 258 325 13 13 chr3 190558333 190558490 -36966088 + LTR16B LTR ERVL 296 452 -12 305 297 28 39 chr3 190558877 190559080 -36965498 + MLT1G3 LTR MaLR 1 207 -388 476 252 20 7 chr3 190609226 190609373 -36915205 + AluSg/x SINE Alu 156 304 -6 3264 208 101 13 chr3 190609543 190610338 -36914240 - L1MB1 LINE L1 -8 6160 5293 211 91 23 23 chr3 190610341 190610385 -36914193 + (TTTC)n Simple_repeat Simple_repeat 4 47 0 880 159 0 6 chr3 190610385 190610548 -36914030 - L1MB1 LINE L1 -844 5302 5141 326 228 69 36 chr3 190611241 190611511 -36913067 + L1ME3 LINE L1 5154 5430 -732 1261 252 52 7 chr3 190611522 190611927 -36912651 + L1ME3 LINE L1 5542 5964 -200 463 228 0 0 chr3 190611938 190612017 -36912561 + MER21B LTR ERV1 12 90 -773 2353 277 70 23 chr3 190612042 190612789 -36911789 + MER21B LTR ERV1 22 803 -60 680 269 55 10 chr3 190612827 190613028 -36911550 + L1ME3 LINE L1 5952 6161 -1 1149 119 144 5 chr3 190613182 190613383 -36911195 - MER30 DNA MER1_type -1 229 1 387 311 58 39 chr3 190614001 190614413 -36910165 + L1M4 LINE L1 3617 4036 -2110 281 260 10 60 chr3 190614960 190615060 -36909518 - L2 LINE L2 0 3272 3178 418 301 135 38 chr3 190615296 190615615 -36908963 + L2 LINE L2 2451 2800 -514 227 350 57 31 chr3 190615634 190615828 -36908750 + L2 LINE L2 2923 3121 -192 2084 115 14 0 chr3 190615844 190616132 -36908446 - AluSg SINE Alu -18 292 1 23 0 0 0 chr3 190616439 190616462 -36908116 + AT_rich Low_complexity Low_complexity 1 23 0 276 213 16 49 chr3 190617451 190617512 -36907066 + AluJo SINE Alu 1 53 -248 4002 140 92 85 chr3 190617512 190618940 -36905638 + pTR5 LTR ERV1 750 2422 -16 450 177 31 21 chr3 190618940 190619036 -36905542 + AluJo SINE Alu 30 126 -186 871 196 6 13 chr3 190619048 190619206 -36905372 + AluJo SINE Alu 137 293 -9 6092 82 22 12 chr3 190620314 190620643 -36903935 - L1PA10 LINE L1 -11 6157 5833 2102 128 0 13 chr3 190620643 190620941 -36903637 - AluSq SINE Alu -19 294 1 6092 82 22 12 chr3 190620941 190621857 -36902721 - L1PA10 LINE L1 -335 5833 4909 10299 215 42 38 chr3 190621857 190625140 -36899438 - L1P3 LINE L1 -3007 3454 44 22 35 0 0 chr3 190625785 190625814 -36898764 + AT_rich Low_complexity Low_complexity 1 29 0 535 292 141 14 chr3 190626057 190626496 -36898082 - L1ME3A LINE L1 -213 5957 5463 244 241 0 0 chr3 190626695 190626753 -36897825 - L1ME3A LINE L1 -706 5458 5401 233 333 63 24 chr3 190627513 190627639 -36896939 + L2 LINE L2 3183 3313 0 5232 205 239 23 chr3 190629620 190631012 -36893566 - MER52A LTR ERV1 -8 1747 56 359 233 0 0 chr3 190631476 190631536 -36893042 - MER52A LTR ERV1 -1695 60 1 21 57 0 0 chr3 190631652 190631687 -36892891 + AT_rich Low_complexity Low_complexity 1 35 0 302 230 96 44 chr3 190632123 190632258 -36892320 + MIR SINE MIR 72 213 -49 198 0 0 0 chr3 190632286 190632308 -36892270 + (TTG)n Simple_repeat Simple_repeat 1 22 0 21 57 0 0 chr3 190632387 190632422 -36892156 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr3 190632966 190632991 -36891587 + AT_rich Low_complexity Low_complexity 1 25 0 344 298 121 40 chr3 190633427 190633625 -36890953 + L2 LINE L2 3095 3308 -5 26 0 0 0 chr3 190633839 190633865 -36890713 + AT_rich Low_complexity Low_complexity 1 26 0 2479 53 0 7 chr3 190634316 190634618 -36889960 + AluY SINE Alu 1 300 -11 519 356 34 4 chr3 190635622 190635861 -36888717 - L2 LINE L2 -743 2571 2326 363 323 90 75 chr3 190636029 190636564 -36888014 + L1ME3A LINE L1 3 545 -5574 307 221 59 127 chr3 190636780 190637237 -36887341 + L1ME3A LINE L1 709 1134 -4985 9851 186 18 1 chr3 190637449 190637653 -36886925 + L1PA14 LINE L1 3303 3502 -2659 180 0 0 0 chr3 190637653 190637673 -36886905 + (CAA)n Simple_repeat Simple_repeat 2 21 0 9851 186 18 1 chr3 190637673 190640261 -36884317 + L1PA14 LINE L1 3502 6159 -2 207 0 0 0 chr3 190640273 190640296 -36884282 + (CA)n Simple_repeat Simple_repeat 2 24 0 628 216 7 7 chr3 190640325 190640464 -36884114 + MLT1A1 LTR MaLR 227 365 0 781 303 84 34 chr3 190640684 190640775 -36883803 + L1ME3A LINE L1 4260 4345 -1784 582 258 0 0 chr3 190640775 190640895 -36883683 - FLAM_A SINE Alu -13 120 1 781 303 84 34 chr3 190640895 190641756 -36882822 + L1ME3A LINE L1 4345 5260 -869 347 285 114 49 chr3 190641796 190642042 -36882536 + L1ME3A LINE L1 5325 5586 -567 337 303 10 0 chr3 190642321 190642420 -36882158 + L1ME3A LINE L1 5858 5957 -196 19055 124 10 31 chr3 190642423 190646259 -36878319 + L1P3 LINE L1 273 4110 -2351 6815 229 19 9 chr3 190646373 190648075 -36876503 - L1P LINE L1 -2779 3367 1649 4940 273 40 30 chr3 190648078 190650703 -36873875 + L1PA12 LINE L1 1030 3681 -3903 3101 223 37 12 chr3 190650695 190651450 -36873128 + L1PA12 LINE L1 4864 5637 -1947 * 21 36 0 0 chr3 190651513 190651541 -36873037 + AT_rich Low_complexity Low_complexity 1 28 0 358 235 38 68 chr3 190651574 190651706 -36872872 - MLT1H LTR MaLR -15 534 397 567 254 85 16 chr3 190651717 190651906 -36872672 - MER63A DNA MER1_type -6 204 3 1087 143 131 55 chr3 190652024 190652261 -36872317 + MSTA LTR MaLR 174 428 0 282 310 71 19 chr3 190652409 190652564 -36872014 + MIR SINE MIR 100 262 0 1973 181 49 10 chr3 190653584 190653993 -36870585 - MSTA LTR MaLR -2 426 2 2432 202 8 16 chr3 190653994 190654484 -36870094 - MSTA-int LTR MaLR 0 1651 1166 2207 170 57 0 chr3 190654492 190654897 -36869681 - MSTA LTR MaLR 0 428 1 23 0 0 0 chr3 190656398 190656421 -36868157 + AT_rich Low_complexity Low_complexity 1 23 0 1482 234 57 44 chr3 190657216 190657712 -36866866 - MLT1D LTR MaLR -3 502 1 234 174 0 0 chr3 190657739 190657785 -36866793 + CT-rich Low_complexity Low_complexity 2 47 0 188 146 83 62 chr3 190657843 190657891 -36866687 + L2 LINE L2 3184 3232 -40 41 36 0 0 chr3 190659837 190659892 -36864686 + AT_rich Low_complexity Low_complexity 1 55 0 204 337 56 11 chr3 190659968 190660057 -36864521 + MIR SINE MIR 80 172 -90 6945 220 6 10 chr3 190660273 190661012 -36863566 - L1 LINE L1 -801 5345 4604 2409 74 0 0 chr3 190661012 190661309 -36863269 - AluY SINE Alu -14 297 1 6945 220 6 10 chr3 190661309 190662217 -36862361 - L1 LINE L1 -1542 4604 3706 2419 103 41 0 chr3 190662217 190662584 -36861994 + L1P5 LINE L1 5390 5771 -380 271 156 52 0 chr3 190662586 190662663 -36861915 + (TA)n Simple_repeat Simple_repeat 1 81 0 201 400 0 0 chr3 190662668 190662743 -36861835 - L2 LINE L2 -998 2316 2242 246 81 0 0 chr3 190662744 190662781 -36861797 + (TA)n Simple_repeat Simple_repeat 1 37 0 452 119 0 0 chr3 190662781 190662848 -36861730 + L1PB2 LINE L1 5796 5862 -289 532 306 258 16 chr3 190662852 190663162 -36861416 - L2 LINE L2 -745 2569 2185 833 282 19 0 chr3 190663444 190663653 -36860925 + MLT1E LTR MaLR 375 587 -6 23 0 0 0 chr3 190663661 190663684 -36860894 + AT_rich Low_complexity Low_complexity 1 23 0 8210 190 35 12 chr3 190663733 190665343 -36859235 + MSTA-int LTR MaLR 5 1651 0 2366 148 57 2 chr3 190665343 190665749 -36858829 + MSTA LTR MaLR 1 428 0 1110 237 48 6 chr3 190665752 190666110 -36858468 + L1 LINE L1 3221 3593 -2553 245 179 0 107 chr3 190666211 190666243 -36858335 + L1MA10 LINE L1 6260 6294 -40 1909 125 13 7 chr3 190666243 190666547 -36858031 - AluSx SINE Alu -6 306 1 245 179 0 107 chr3 190666547 190666598 -36857980 + L1MA10 LINE L1 6294 6334 0 473 220 103 23 chr3 190666849 190667063 -36857515 - L1M4 LINE L1 -788 5358 5128 248 274 65 57 chr3 190667068 190667190 -36857388 - HAL1 LINE L1 -1092 1415 1295 2232 103 0 0 chr3 190667190 190667501 -36857077 - AluY SINE Alu 0 311 1 248 274 65 57 chr3 190667501 190667626 -36856952 - HAL1 LINE L1 -1212 1295 1166 22 70 0 0 chr3 190667704 190667747 -36856831 + AT_rich Low_complexity Low_complexity 1 43 0 2903 90 4 3 chr3 190667765 190668262 -36856316 + MER41A LTR ERV1 1 554 0 30 27 0 0 chr3 190668982 190669019 -36855559 + AT_rich Low_complexity Low_complexity 1 37 0 300 305 141 0 chr3 190669488 190669616 -36854962 - MIR SINE MIR -56 206 61 916 146 34 17 chr3 190669997 190670175 -36854403 + MER5A DNA MER1_type 5 185 -4 2367 47 20 10 chr3 190670493 190670794 -36853784 + AluY SINE Alu 2 305 -6 22 56 0 0 chr3 190671596 190671632 -36852946 + AT_rich Low_complexity Low_complexity 1 36 0 22 35 0 0 chr3 190671856 190671885 -36852693 + AT_rich Low_complexity Low_complexity 1 29 0 641 143 0 25 chr3 190672626 190672745 -36851833 - THE1B LTR MaLR 0 364 249 6431 88 8 8 chr3 190672887 190673044 -36851534 + L1PA7 LINE L1 4631 4787 -1367 443 62 0 16 chr3 190673044 190673108 -36851470 + (CA)n Simple_repeat Simple_repeat 2 64 0 261 0 0 0 chr3 190673115 190673144 -36851434 + (TG)n Simple_repeat Simple_repeat 2 30 0 6431 88 8 8 chr3 190673144 190673180 -36851398 + L1PA7 LINE L1 4793 4828 -1326 297 0 0 0 chr3 190673180 190673213 -36851365 + (CA)n Simple_repeat Simple_repeat 2 34 0 6431 88 8 8 chr3 190673213 190674557 -36850021 + L1PA7 LINE L1 4827 6154 0 235 327 48 12 chr3 190674593 190674761 -36849817 + L1ME3A LINE L1 5997 6170 0 247 319 141 26 chr3 190674821 190675012 -36849566 - L2 LINE L2 -850 2464 2252 29 47 0 0 chr3 190675926 190675969 -36848609 + AT_rich Low_complexity Low_complexity 1 43 0 279 269 46 28 chr3 190676186 190676294 -36848284 - MLT1J1 LTR MaLR -139 307 198 607 267 33 22 chr3 190676440 190676620 -36847958 - MLT1H LTR MaLR -325 224 43 332 253 58 0 chr3 190676655 190676742 -36847836 - MLT1J2 LTR MaLR -314 136 45 2007 134 62 20 chr3 190677183 190677541 -36847037 + THE1C LTR MaLR 1 373 -2 307 403 45 0 chr3 190677801 190677935 -36846643 + MER91A DNA MER1_type 19 158 -38 317 287 204 45 chr3 190678135 190678292 -36846286 + MER5A DNA MER1_type 8 189 0 1630 204 54 52 chr3 190678595 190679061 -36845517 - MLT1C LTR MaLR 0 467 1 392 336 46 40 chr3 190679393 190679717 -36844861 + L2 LINE L2 2976 3301 -12 21 36 0 0 chr3 190680200 190680228 -36844350 + AT_rich Low_complexity Low_complexity 1 28 0 2405 44 0 35 chr3 190680576 190680894 -36843684 + AluY SINE Alu 1 307 -4 21 0 0 0 chr3 190681446 190681467 -36843111 + AT_rich Low_complexity Low_complexity 1 21 0 181 146 42 0 chr3 190681603 190681651 -36842927 + (TA)n Simple_repeat Simple_repeat 1 50 0 576 338 88 3 chr3 190681978 190682366 -36842212 + L1MC/D LINE L1 5369 5789 -2019 931 100 0 0 chr3 190682391 190682511 -36842067 + AluY SINE Alu 172 291 -20 1054 210 20 0 chr3 190682773 190682968 -36841610 - MLT1B LTR MaLR 0 390 192 24 91 0 0 chr3 190683180 190683246 -36841332 + AT_rich Low_complexity Low_complexity 1 66 0 34 42 0 0 chr3 190683265 190683313 -36841265 + AT_rich Low_complexity Low_complexity 1 48 0 26 0 0 0 chr3 190683357 190683383 -36841195 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 190683847 190683868 -36840710 + AT_rich Low_complexity Low_complexity 1 21 0 1288 188 126 57 chr3 190684140 190684577 -36840001 - MLT1C LTR MaLR 0 467 1 403 125 48 0 chr3 190684636 190684740 -36839838 + (TA)n Simple_repeat Simple_repeat 2 110 0 7266 36 8 0 chr3 190685387 190686273 -36838305 - L1P LINE L1 -1075 5071 4179 433 236 0 9 chr3 190686281 190686387 -36838191 + L1 LINE L1 3951 4055 -2091 * 5135 249 37 24 chr3 190686375 190688547 -36836031 + L1MA8 LINE L1 1433 3627 -2519 292 304 86 69 chr3 190688843 190689146 -36835432 - L1ME3A LINE L1 -211 6195 5888 2452 74 0 3 chr3 190689153 190689465 -36835113 - AluY SINE Alu 0 311 1 1910 232 17 18 chr3 190689487 190690170 -36834408 - L1ME3A LINE L1 -743 5639 5058 265 282 0 0 chr3 190690182 190690260 -36834318 - L1ME3A LINE L1 -2735 3647 3570 215 180 34 34 chr3 190690415 190690504 -36834074 + (CAA)n Simple_repeat Simple_repeat 1 89 0 * 257 237 46 29 chr3 190690443 190690616 -36833962 + (CACAA)n Simple_repeat Simple_repeat 2 177 0 * 386 196 11 74 chr3 190690569 190690758 -36833820 + A-rich Low_complexity Low_complexity 3 179 0 6398 220 33 19 chr3 190690847 190693171 -36831407 + L1MA8 LINE L1 3589 5941 -350 237 33 0 0 chr3 190693349 190693379 -36831199 + (TGAA)n Simple_repeat Simple_repeat 4 33 0 22 35 0 0 chr3 190694156 190694185 -36830393 + AT_rich Low_complexity Low_complexity 1 29 0 180 111 0 0 chr3 190694562 190694589 -36829989 + (TATATG)n Simple_repeat Simple_repeat 1 27 0 22 35 0 0 chr3 190695520 190695549 -36829029 + AT_rich Low_complexity Low_complexity 1 29 0 27 0 0 0 chr3 190696081 190696108 -36828470 + AT_rich Low_complexity Low_complexity 1 27 0 619 270 16 27 chr3 190696496 190696681 -36827897 + L2 LINE L2 3127 3309 -4 230 266 16 16 chr3 190696848 190696912 -36827666 + (CATA)n Simple_repeat Simple_repeat 3 66 0 224 263 11 21 chr3 190697157 190697252 -36827326 + (TA)n Simple_repeat Simple_repeat 1 94 0 292 178 10 109 chr3 190697252 190697353 -36827225 + L1MC4 LINE L1 6612 6702 -1340 561 15 0 0 chr3 190698101 190698167 -36826411 + MLT2A1 LTR ERVL 1 66 -378 19884 83 6 6 chr3 190698168 190700804 -36823774 + HERVL-A1 LTR ERVL 3018 5654 0 3468 57 18 0 chr3 190700804 190701240 -36823338 + MLT2A1 LTR ERVL 1 444 0 3479 119 0 6 chr3 190701467 190702005 -36822573 - L1MA3 LINE L1 -2 6303 5769 541 125 0 0 chr3 190702014 190702102 -36822476 - L1PB3 LINE L1 0 6154 6067 352 271 143 84 chr3 190702338 190703109 -36821469 - L1ME3A LINE L1 -4209 2354 1390 355 278 17 23 chr3 190703469 190703712 -36820866 + T-rich Low_complexity Low_complexity 1 241 0 580 211 122 104 chr3 190703889 190704283 -36820295 + L1MC5 LINE L1 6633 7033 -928 * 4731 151 12 42 chr3 190704249 190705135 -36819443 - L1PA16 LINE L1 -1 6165 5306 3140 217 16 33 chr3 190705150 190705979 -36818599 + L1PA16 LINE L1 4493 5307 -839 591 249 34 34 chr3 190706228 190706465 -36818113 + L1MC5 LINE L1 7289 7525 -436 22 0 0 0 chr3 190706711 190706733 -36817845 + AT_rich Low_complexity Low_complexity 1 22 0 268 218 27 27 chr3 190706879 190706989 -36817589 + T-rich Low_complexity Low_complexity 2 111 0 228 233 0 0 chr3 190707008 190707081 -36817497 + T-rich Low_complexity Low_complexity 1 73 0 2469 198 32 13 chr3 190707251 190707781 -36816797 + L1 LINE L1 3556 4095 -2051 * 2891 147 24 0 chr3 190707778 190708291 -36816287 + L1P5 LINE L1 5209 5744 -410 586 136 134 6 chr3 190708397 190708540 -36816038 - THE1B LTR MaLR -36 328 180 259 26 0 0 chr3 190708841 190708880 -36815698 - L1PA2 LINE L1 0 6155 6117 2044 216 44 8 chr3 190708896 190709378 -36815200 + L1MC3 LINE L1 5361 5859 -1926 13930 119 15 12 chr3 190709380 190712419 -36812159 - L1PA10 LINE L1 0 6168 3123 4988 185 26 12 chr3 190712566 190713909 -36810669 - L1PA15 LINE L1 -2 6163 4808 194 354 44 26 chr3 190714211 190714324 -36810254 - MIR SINE MIR -42 220 106 180 204 19 56 chr3 190715628 190715682 -36808896 - L2 LINE L2 -596 2718 2667 338 278 61 35 chr3 190715750 190715865 -36808713 - MIR3 SINE MIR 0 208 91 26 74 0 0 chr3 190716052 190716106 -36808472 + AT_rich Low_complexity Low_complexity 1 54 0 292 241 27 27 chr3 190716352 190716464 -36808114 - L1MC/D LINE L1 -1990 5818 5707 602 321 31 79 chr3 190716585 190717297 -36807281 + L1PA15 LINE L1 1264 2069 -5512 1117 125 0 0 chr3 190717300 190717452 -36807126 + AluSp SINE Alu 145 296 -17 15534 219 27 16 chr3 190717498 190718502 -36806076 + L1PA15 LINE L1 2452 3443 -4160 3071 127 40 2 chr3 190718502 190718997 -36805581 - MER75 DNA T2_type 0 514 1 15534 219 27 16 chr3 190718997 190722789 -36801789 + L1PA15 LINE L1 3443 7296 -307 2425 80 0 10 chr3 190722789 190723101 -36801477 - AluY SINE Alu -2 309 1 15534 219 27 16 chr3 190723101 190723405 -36801173 + L1PA15 LINE L1 7296 7595 -8 13610 192 33 20 chr3 190723623 190724056 -36800522 - L1PB3 LINE L1 0 6870 6444 324 120 0 0 chr3 190724056 190724106 -36800472 + (CA)n Simple_repeat Simple_repeat 2 51 0 13610 192 33 20 chr3 190724106 190728051 -36796527 - L1PB3 LINE L1 -426 6444 2435 692 96 39 0 chr3 190728055 190728159 -36796419 - L1PB3 LINE L1 -6753 110 3 702 176 118 0 chr3 190728354 190728490 -36796088 - MER77 LTR ERV1 -37 568 417 6628 123 26 17 chr3 190728490 190730117 -36794461 - L1PBa LINE L1 -4439 2424 634 1016 155 26 5 chr3 190730117 190730310 -36794268 - L1PBa LINE L1 -6663 200 4 2138 238 24 78 chr3 190730447 190731085 -36793493 - MER77 LTR ERV1 -2 603 1 462 400 11 11 chr3 190731673 190731848 -36792730 + MER91A DNA MER1_type 18 192 -4 511 358 39 18 chr3 190732829 190733058 -36791520 - MIR SINE MIR -27 235 2 209 273 0 18 chr3 190733390 190733445 -36791133 + MER5A DNA MER1_type 136 189 0 21 57 0 0 chr3 190736226 190736261 -36788317 + AT_rich Low_complexity Low_complexity 1 35 0 294 268 196 55 chr3 190736535 190736755 -36787823 + MIR SINE MIR 8 258 -4 272 308 38 55 chr3 190737164 190737529 -36787049 - L1MEd LINE L1 -4818 1311 962 4790 181 17 3 chr3 190737565 190738467 -36786111 - L1MA6 LINE L1 -5 6937 6024 5832 216 19 11 chr3 190738468 190739859 -36784719 - L1MA6 LINE L1 -810 5978 4577 4840 259 88 42 chr3 190739857 190742064 -36782514 - L1MA6 LINE L1 -2583 4205 1817 * 2053 112 0 14 chr3 190742064 190742396 -36782182 - AluSc SINE Alu 0 328 1 4840 259 88 42 chr3 190742396 190744231 -36780347 - L1MA6 LINE L1 -4971 1817 68 21 57 0 0 chr3 190744288 190744323 -36780255 + AT_rich Low_complexity Low_complexity 1 35 0 28 29 0 0 chr3 190745102 190745137 -36779441 + AT_rich Low_complexity Low_complexity 1 35 0 2164 117 0 13 chr3 190745790 190746106 -36778472 - AluSx SINE Alu 0 312 1 1478 220 42 11 chr3 190746897 190747251 -36777327 - MLT1A1 LTR MaLR 0 365 1 22 0 0 0 chr3 190747360 190747382 -36777196 + AT_rich Low_complexity Low_complexity 1 22 0 326 295 37 51 chr3 190747786 190748224 -36776354 + L1M4c LINE L1 1073 1507 -4877 1749 253 51 30 chr3 190748347 190749107 -36775471 + L1M4c LINE L1 2475 3207 -3175 213 82 61 0 chr3 190749115 190749164 -36775414 + (TA)n Simple_repeat Simple_repeat 2 53 0 24 0 0 0 chr3 190749186 190749210 -36775368 + AT_rich Low_complexity Low_complexity 1 24 0 484 259 39 75 chr3 190749269 190749524 -36775054 + L1M4c LINE L1 3838 4083 -2299 1306 206 128 3 chr3 190749541 190749823 -36774755 + MSTB LTR MaLR 1 317 -109 2928 153 54 31 chr3 190749823 190750612 -36773966 + pTR5 LTR ERV1 743 2025 -413 301 224 31 20 chr3 190750612 190750710 -36773868 + LTR30 LTR ERV1 544 642 -80 1311 98 57 0 chr3 190750711 190750905 -36773673 + LTR12 LTR ERV1 377 581 -133 570 161 11 0 chr3 190750912 190751005 -36773573 + MSTB LTR MaLR 335 428 0 6944 216 5 4 chr3 190751005 190752353 -36772225 + MSTB-int LTR MaLR 1 1350 -301 1849 31 0 0 chr3 190752372 190752594 -36771984 + L1PA4 LINE L1 5923 6144 -11 386 219 0 37 chr3 190752744 190752826 -36771752 + L1MC3 LINE L1 7103 7181 -604 4984 173 24 22 chr3 190752837 190753904 -36770674 + L1M4c LINE L1 4188 5256 -1126 2711 138 7 9 chr3 190753904 190754366 -36770212 + L1MA1 LINE L1 5840 6301 -1 765 233 12 6 chr3 190754378 190754550 -36770028 + L1MC3 LINE L1 7172 7344 -441 1428 235 32 7 chr3 190754664 190755072 -36769506 + L1MC3 LINE L1 7368 7785 0 1613 260 69 16 chr3 190755077 190755769 -36768809 + L1ME3A LINE L1 4673 5401 -745 934 179 5 47 chr3 190755782 190755972 -36768606 + AluJo SINE Alu 121 302 -10 492 276 152 23 chr3 190755992 190756457 -36768121 + L1ME3A LINE L1 5533 6072 -98 22 35 0 0 chr3 190756563 190756592 -36767986 + AT_rich Low_complexity Low_complexity 1 29 0 25 0 0 0 chr3 190756701 190756726 -36767852 + AT_rich Low_complexity Low_complexity 1 25 0 213 113 0 81 chr3 190756792 190756854 -36767724 + (TTTTA)n Simple_repeat Simple_repeat 2 58 0 2193 95 0 7 chr3 190758515 190758799 -36765779 + AluSc SINE Alu 1 282 -27 216 0 0 0 chr3 190758803 190758827 -36765751 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1770 117 42 4 chr3 190759058 190759322 -36765256 - AluSq SINE Alu -39 274 1 285 290 192 40 chr3 190760276 190760586 -36763992 - L2 LINE L2 -261 3052 2708 640 195 94 20 chr3 190761881 190762030 -36762548 + MER50 LTR ERV1 9 168 -566 1676 89 21 2 chr3 190762116 190762454 -36762124 - MLT2A1 LTR ERVL -33 411 1 737 112 72 8 chr3 190762454 190762579 -36761999 - HERVL-A1 LTR ERVL 0 5654 5522 * 2184 58 0 4 chr3 190762577 190762851 -36761727 - HERVL LTR ERVL -2897 2757 2485 4997 118 17 13 chr3 190763289 190764063 -36760515 - L1PA13 LINE L1 -46 6117 5341 23 33 0 0 chr3 190764123 190764153 -36760425 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr3 190764328 190764356 -36760222 + AT_rich Low_complexity Low_complexity 1 28 0 11189 171 19 26 chr3 190764531 190767150 -36757428 - MER52-int LTR ERV1 -425 2663 852 1006 281 59 24 chr3 190767322 190767721 -36756857 - MER52-int LTR ERV1 -2512 599 210 255 114 0 0 chr3 190767843 190767887 -36756691 - MER52C LTR ERV1 -901 377 334 297 273 0 0 chr3 190768653 190768730 -36755848 - MIR SINE MIR -1 261 185 2173 186 19 57 chr3 190768896 190769598 -36754980 + L1MA8 LINE L1 5443 6092 -79 2304 87 0 0 chr3 190769698 190769997 -36754581 - HERVL-A1 LTR ERVL -3254 2400 2102 * 7981 75 6 7 chr3 190769995 190771036 -36753542 - HERVL-A1 LTR ERVL -4614 1040 1 428 106 1 0 chr3 190771036 190771105 -36753473 - MLT2A1 LTR ERVL 0 444 383 197 83 28 0 chr3 190771128 190771164 -36753414 + (TA)n Simple_repeat Simple_repeat 2 38 0 2970 75 31 0 chr3 190771166 190771554 -36753024 - MLT2A1 LTR ERVL -44 400 1 1237 220 87 37 chr3 190771585 190771989 -36752589 + MER50 LTR ERV1 292 715 -19 954 220 67 19 chr3 190772288 190772556 -36752022 + AluJb SINE Alu 1 281 -31 2428 167 5 0 chr3 190772693 190773129 -36751449 - L1P LINE L1 -1075 5071 4634 1435 213 31 3 chr3 190773228 190773519 -36751059 - AluSx SINE Alu -13 299 1 1409 190 60 4 chr3 190773707 190773976 -36750602 + AluJb SINE Alu 1 284 -18 306 0 0 0 chr3 190773976 190774010 -36750568 + (TTAA)n Simple_repeat Simple_repeat 1 34 0 21 0 0 0 chr3 190774129 190774150 -36750428 + AT_rich Low_complexity Low_complexity 1 21 0 262 370 8 24 chr3 190775476 190775603 -36748975 - MIR SINE MIR -123 139 15 912 168 31 0 chr3 190775923 190776114 -36748464 + L1MA8 LINE L1 6085 6281 -10 681 271 0 0 chr3 190777223 190777378 -36747200 + MER63A DNA MER1_type 56 210 0 221 292 244 38 chr3 190777641 190777850 -36746728 - MIR SINE MIR -6 256 5 209 221 0 70 chr3 190778519 190778605 -36745973 + (TTAAA)n Simple_repeat Simple_repeat 3 82 0 281 262 33 0 chr3 190779447 190779508 -36745070 + MIR3 SINE MIR 105 167 -41 10424 115 21 114 chr3 190779925 190780564 -36744014 - L1PA7 LINE L1 -528 5626 4929 3973 57 8 2 chr3 190780564 190781070 -36743508 + L1PA7 LINE L1 5643 6153 -1 10424 115 21 114 chr3 190781070 190781430 -36743148 - L1P3 LINE L1 -1225 4929 4537 2479 128 3 8 chr3 190781430 190781796 -36742782 + THE1B LTR MaLR 1 364 0 10424 115 21 114 chr3 190781796 190783860 -36740718 - L1P3 LINE L1 -1617 4537 2866 9181 29 2 0 chr3 190783851 190784954 -36739624 + L1P LINE L1 4116 5220 -926 * 1215 243 33 18 chr3 190785394 190785943 -36738635 - LTR40b LTR ERVL 0 462 19 1286 219 25 0 chr3 190786607 190786885 -36737693 + AluJb SINE Alu 1 285 -27 206 0 0 65 chr3 190786888 190786919 -36737659 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 198 344 80 0 chr3 190787327 190787452 -36737126 - MIR SINE MIR -10 252 118 1892 243 92 78 chr3 190787561 190788376 -36736202 - LTR1B LTR ERV1 0 826 1 1743 178 32 32 chr3 190788376 190788592 -36735986 - HUERS-P2 LTR ERV1 0 3088 2870 233 37 0 0 chr3 190788592 190788619 -36735959 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1743 178 32 32 chr3 190788619 190788740 -36735838 - HUERS-P2 LTR ERV1 -217 2871 2751 826 148 0 0 chr3 190788737 190788859 -36735719 - MER52-int LTR ERV1 -488 6603 6482 * 2461 91 110 27 chr3 190788859 190789222 -36735356 + MLT2A1 LTR ERVL 2 404 -40 375 23 0 0 chr3 190789222 190789266 -36735312 + (CA)n Simple_repeat Simple_repeat 1 44 0 2461 91 110 27 chr3 190789266 190789311 -36735267 + MLT2A1 LTR ERVL 404 444 0 1222 81 0 0 chr3 190789319 190789468 -36735110 - AluSg SINE Alu -161 149 1 8070 151 13 4 chr3 190789469 190790131 -36734447 - MER52-int LTR ERV1 -1472 5619 4939 2637 68 3 41 chr3 190790131 190790500 -36734078 - THE1A LTR MaLR 0 355 1 8070 151 13 4 chr3 190790500 190791078 -36733500 - MER52-int LTR ERV1 -2152 4939 4368 5783 148 7 2 chr3 190791070 190791956 -36732622 - MER52-int LTR ERV1 -2635 4456 3567 * 1182 207 108 62 chr3 190792056 190792443 -36732135 - LTR1B LTR ERV1 -421 405 1 253 276 11 11 chr3 190792566 190792653 -36731925 + L2 LINE L2 1730 1816 -1498 2506 247 40 27 chr3 190792961 190793592 -36730986 + MER21B LTR ERV1 14 652 -211 25 65 0 0 chr3 190793748 190793794 -36730784 + AT_rich Low_complexity Low_complexity 1 46 0 24 0 0 0 chr3 190794122 190794146 -36730432 + AT_rich Low_complexity Low_complexity 1 24 0 26 50 0 0 chr3 190794230 190794270 -36730308 + AT_rich Low_complexity Low_complexity 1 40 0 1585 206 108 20 chr3 190794387 190794784 -36729794 + MSTB1 LTR MaLR 1 432 0 540 291 107 40 chr3 190795791 190796202 -36728376 - L2 LINE L2 -219 3053 2596 2334 106 0 3 chr3 190796412 190796723 -36727855 - AluSq SINE Alu -3 310 1 229 343 57 9 chr3 190797080 190797185 -36727393 + MIR SINE MIR 74 183 -79 294 29 0 0 chr3 190797189 190797224 -36727354 + (CA)n Simple_repeat Simple_repeat 1 35 0 186 103 0 0 chr3 190797360 190797389 -36727189 + (TTCA)n Simple_repeat Simple_repeat 4 32 0 200 216 0 20 chr3 190798740 190798791 -36725787 + (TATG)n Simple_repeat Simple_repeat 1 50 0 1819 146 52 38 chr3 190799843 190800212 -36724366 - THE1C LTR MaLR 0 375 2 9268 139 7 42 chr3 190800215 190801847 -36722731 - THE1C-int LTR MaLR -2 1578 4 1781 142 65 44 chr3 190801850 190802217 -36722361 - THE1C LTR MaLR 0 375 1 200 216 0 0 chr3 190802420 190802457 -36722121 + (CATA)n Simple_repeat Simple_repeat 4 40 0 976 198 0 0 chr3 190802842 190803039 -36721539 + FAM SINE Alu 1 61 0 24 0 0 0 chr3 190803526 190803550 -36721028 + AT_rich Low_complexity Low_complexity 1 24 0 1055 215 72 74 chr3 190805075 190805438 -36719140 - MER57A LTR ERV1 0 403 42 815 173 13 0 chr3 190805793 190805943 -36718635 + L1MB1 LINE L1 6017 6168 0 426 39 0 0 chr3 190806484 190806536 -36718042 + (TG)n Simple_repeat Simple_repeat 2 53 0 358 105 0 26 chr3 190806861 190806937 -36717641 + (TCTCCC)n Simple_repeat Simple_repeat 4 77 0 552 316 63 16 chr3 190807114 190807367 -36717211 + L1MCb LINE L1 167 431 -5614 1952 125 3 28 chr3 190807369 190807658 -36716920 + AluSx SINE Alu 1 282 -30 208 0 0 0 chr3 190807658 190807681 -36716897 + (TAAAA)n Simple_repeat Simple_repeat 4 170 0 315 214 0 0 chr3 190807683 190807753 -36716825 + (CATATA)n Simple_repeat Simple_repeat 3 72 0 2422 234 125 25 chr3 190807807 190808238 -36716340 + L1MCb LINE L1 465 851 -5549 1324 214 31 24 chr3 190808238 190808363 -36716215 + AluJo SINE Alu 1 124 -188 243 0 0 0 chr3 190808363 190808390 -36716188 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1324 214 31 24 chr3 190808390 190808558 -36716020 + AluJo SINE Alu 124 296 -16 2422 234 125 25 chr3 190808558 190809063 -36715515 + L1MCb LINE L1 851 1495 -4905 440 213 139 0 chr3 190809060 190809198 -36715380 - L1MC/D LINE L1 -611 5748 5560 * 437 253 0 0 chr3 190812282 190812373 -36712205 + L1ME LINE L1 5522 5612 -552 1979 101 37 3 chr3 190812477 190812808 -36711770 - AluY SINE Alu 0 341 1 1003 69 23 0 chr3 190812808 190812939 -36711639 - AluY SINE Alu -177 134 1 2666 237 75 63 chr3 190812939 190814041 -36710537 + L1MC4a LINE L1 6690 7804 -4 403 268 2 0 chr3 190814761 190814880 -36709698 - L1MEc LINE L1 -3898 2680 2522 2049 109 29 47 chr3 190815394 190815755 -36708823 - MER51B LTR ERV1 0 377 63 460 195 73 85 chr3 190815753 190815917 -36708661 - MER51B LTR ERV1 -215 162 1 * 21 89 0 0 chr3 190817579 190817635 -36706943 + AT_rich Low_complexity Low_complexity 1 56 0 1666 188 53 3 chr3 190817848 190818168 -36706410 - MLT1A1 LTR MaLR -29 336 1 337 222 133 0 chr3 190819476 190819566 -36705012 - MER58 DNA MER1_type 0 2420 2319 262 282 118 0 chr3 190819586 190819671 -36704907 - MER58 DNA MER1_type -2325 95 1 228 212 15 45 chr3 190819671 190819737 -36704841 + MIR SINE MIR 89 152 -110 1022 199 47 25 chr3 190819941 190820177 -36704401 - AluJo SINE Alu -9 303 63 2199 137 37 0 chr3 190820787 190821138 -36703440 - THE1B LTR MaLR 0 364 1 563 240 55 7 chr3 190822136 190822282 -36702296 + LTR50 LTR ERVL 8 160 -635 440 231 223 13 chr3 190822288 190822528 -36702050 + LTR50 LTR ERVL 295 681 -114 678 266 71 5 chr3 190822738 190822968 -36701610 - MIR SINE MIR 0 262 17 639 233 33 0 chr3 190823102 190823252 -36701326 + L1MA10 LINE L1 6180 6334 0 21 0 0 0 chr3 190823484 190823505 -36701073 + AT_rich Low_complexity Low_complexity 1 21 0 1589 160 17 27 chr3 190824244 190824544 -36700034 + AluJo SINE Alu 4 300 -12 25 0 0 0 chr3 190824744 190824769 -36699809 + AT_rich Low_complexity Low_complexity 1 25 0 232 281 53 44 chr3 190825846 190825960 -36698618 + MIR SINE MIR 98 212 -50 556 291 74 27 chr3 190825992 190826313 -36698265 + MLT1J LTR MaLR 40 414 -97 350 297 50 0 chr3 190826938 190827039 -36697539 - L2 LINE L2 -1 3312 3207 313 333 0 0 chr3 190828610 190828694 -36695884 + MIR SINE MIR 16 99 -109 233 151 41 82 chr3 190829430 190829503 -36695075 + L1MA4A LINE L1 6227 6296 -7 23 54 0 0 chr3 190829683 190829720 -36694858 + AT_rich Low_complexity Low_complexity 1 37 0 327 65 0 0 chr3 190829812 190829858 -36694720 + (TG)n Simple_repeat Simple_repeat 2 47 0 973 177 36 54 chr3 190829858 190830221 -36694357 - MLT1A2 LTR MaLR -50 342 6 23 0 0 0 chr3 190830297 190830320 -36694258 + AT_rich Low_complexity Low_complexity 1 23 0 3976 22 0 0 chr3 190830439 190830901 -36693677 - L1PA2 LINE L1 0 6155 5694 224 264 172 11 chr3 190831128 190831215 -36693363 + L2 LINE L2 3172 3272 0 195 129 0 0 chr3 190831631 190831662 -36692916 + (GGAA)n Simple_repeat Simple_repeat 2 32 0 3036 205 55 10 chr3 190832613 190833306 -36691272 + L1MC3 LINE L1 7060 7783 -2 1345 243 21 25 chr3 190833986 190834311 -36690267 - MLT1A2 LTR MaLR -48 326 3 372 278 188 21 chr3 190834364 190834508 -36690070 + MER5A DNA MER1_type 22 189 0 230 361 65 0 chr3 190835888 190836043 -36688535 + L1ME LINE L1 5691 5855 -266 754 301 80 23 chr3 190836255 190836607 -36687971 - LTR33 LTR ERVL -1 520 149 353 314 219 21 chr3 190836967 190837250 -36687328 + LTR33 LTR ERVL 156 494 -27 1268 220 32 72 chr3 190837456 190837861 -36686717 - MLT1B LTR MaLR 0 390 2 240 313 72 0 chr3 190838844 190838927 -36685651 + MER5A DNA MER1_type 10 98 -91 1141 204 98 84 chr3 190839051 190839560 -36685018 + LTR40a LTR ERVL 1 516 -3 2849 269 47 64 chr3 190839673 190840570 -36684008 + HERVL40 LTR ERVL 20 894 -4636 275 0 29 0 chr3 190840570 190840605 -36683973 + (CAAAA)n Simple_repeat Simple_repeat 2 37 0 2849 269 47 64 chr3 190840605 190840891 -36683687 + HERVL40 LTR ERVL 894 1183 -4347 313 337 144 0 chr3 190841446 190841627 -36682951 - MIR SINE MIR -21 241 35 224 378 103 25 chr3 190843762 190844122 -36680456 + L2 LINE L2 2345 2732 -582 492 332 84 24 chr3 190844455 190844705 -36679873 - LTR16A LTR ERVL -161 289 25 962 230 0 10 chr3 190845167 190845363 -36679215 + AluJo SINE Alu 87 280 -32 34 0 0 0 chr3 190845364 190845398 -36679180 + AT_rich Low_complexity Low_complexity 1 34 0 27 49 0 0 chr3 190845488 190845529 -36679049 + AT_rich Low_complexity Low_complexity 1 41 0 306 372 17 17 chr3 190846101 190846332 -36678246 + L2 LINE L2 1752 1982 -1332 491 262 195 0 chr3 190847649 190847798 -36676780 + MER45A DNA AcHobo 1 178 0 2119 103 0 3 chr3 190848669 190849010 -36675568 + AluSc SINE Alu 1 340 0 25 0 0 0 chr3 190849887 190849912 -36674666 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 190849998 190850019 -36674559 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 190850081 190850104 -36674474 + AT_rich Low_complexity Low_complexity 1 23 0 4154 191 36 52 chr3 190850380 190851333 -36673245 - MER52A LTR ERV1 0 1755 819 6146 88 16 1 chr3 190851442 190852533 -36672045 + L1PA13 LINE L1 5042 6152 -11 23 33 0 0 chr3 190853490 190853520 -36671058 + AT_rich Low_complexity Low_complexity 1 30 0 345 58 39 0 chr3 190853529 190853581 -36670997 + Alu SINE Alu 242 295 -7 331 380 7 7 chr3 190854148 190854290 -36670288 + MIR SINE MIR 34 175 -87 270 0 0 0 chr3 190854704 190854734 -36669844 + (TG)n Simple_repeat Simple_repeat 2 31 0 399 233 0 0 chr3 190856749 190856822 -36667756 - tRNA-Ile-ATT tRNA tRNA -3 74 2 22 70 0 0 chr3 190857491 190857534 -36667044 + AT_rich Low_complexity Low_complexity 1 43 0 183 200 75 0 chr3 190857960 190858000 -36666578 - MIR3 SINE MIR -41 167 125 1550 196 65 16 chr3 190858094 190858466 -36666112 + MLT1B LTR MaLR 1 390 0 483 316 67 27 chr3 190859697 190859922 -36664656 + L2 LINE L2 2932 3165 -148 336 368 23 8 chr3 190860388 190860521 -36664057 - L2 LINE L2 -1 3271 3137 302 159 32 0 chr3 190861389 190861452 -36663126 + (TATATG)n Simple_repeat Simple_repeat 5 69 0 276 130 0 0 chr3 190861476 190861522 -36663056 + (GA)n Simple_repeat Simple_repeat 2 47 0 1529 168 120 0 chr3 190861531 190861822 -36662756 + MER2 DNA MER2_type 20 345 0 225 0 0 0 chr3 190861832 190861857 -36662721 + (TG)n Simple_repeat Simple_repeat 2 26 0 201 147 0 0 chr3 190861885 190861919 -36662659 + (CA)n Simple_repeat Simple_repeat 2 35 0 365 308 92 50 chr3 190861994 190862234 -36662344 + L1ME4a LINE L1 5629 5878 -243 2202 80 40 3 chr3 190862583 190862883 -36661695 - AluY SINE Alu 0 311 1 187 339 16 0 chr3 190862910 190862972 -36661606 + L2 LINE L2 2695 2757 -557 30 45 0 0 chr3 190863372 190863416 -36661162 + AT_rich Low_complexity Low_complexity 1 44 0 701 295 59 70 chr3 190864937 190865581 -36658997 - L1MEc LINE L1 -4565 1971 1227 258 221 0 26 chr3 190865687 190865764 -36658814 - L1MEc LINE L1 -5201 1215 1141 1944 142 46 27 chr3 190866071 190866437 -36658141 - THE1C LTR MaLR 0 375 3 217 143 36 18 chr3 190867430 190867486 -36657092 + (TA)n Simple_repeat Simple_repeat 1 57 0 41 36 0 0 chr3 190867571 190867626 -36656952 + AT_rich Low_complexity Low_complexity 1 55 0 6280 89 11 11 chr3 190867626 190869195 -36655383 - SVA Other Other -723 1384 47 259 261 57 0 chr3 190869296 190869384 -36655194 - L1MEc LINE L1 -6267 159 67 25 31 0 0 chr3 190870268 190870300 -36654278 + AT_rich Low_complexity Low_complexity 1 32 0 32 57 0 0 chr3 190870334 190870387 -36654191 + AT_rich Low_complexity Low_complexity 1 53 0 207 0 0 0 chr3 190870446 190870469 -36654109 + (TA)n Simple_repeat Simple_repeat 2 24 0 282 296 68 5 chr3 190872093 190872205 -36652373 - MIR SINE MIR -7 201 79 243 61 0 0 chr3 190873359 190873392 -36651186 + (TC)n Simple_repeat Simple_repeat 1 33 0 393 22 0 0 chr3 190873392 190873438 -36651140 + (TG)n Simple_repeat Simple_repeat 1 46 0 1253 189 53 98 chr3 190875959 190876355 -36648223 + MLT1B LTR MaLR 4 381 -9 1769 159 54 0 chr3 190876467 190876763 -36647815 + AluSx SINE Alu 1 312 0 637 244 17 50 chr3 190877030 190877210 -36647368 + MER45A DNA AcHobo 4 177 -1 1808 189 61 20 chr3 190877590 190877986 -36646592 - MSTB1 LTR MaLR 0 432 21 989 293 92 49 chr3 190878034 190878424 -36646154 - MLT1L LTR MaLR 0 615 243 1955 145 41 14 chr3 190878424 190878789 -36645789 + THE1C LTR MaLR 1 375 0 9816 128 35 5 chr3 190878789 190880324 -36644254 + THE1C-int LTR MaLR 1 1580 0 2218 121 39 11 chr3 190880324 190880687 -36643891 + THE1C LTR MaLR 1 373 -2 989 293 92 49 chr3 190880687 190880884 -36643694 - MLT1L LTR MaLR -371 244 1 25 31 0 0 chr3 190882602 190882634 -36641944 + AT_rich Low_complexity Low_complexity 1 32 0 191 343 107 59 chr3 190882947 190883116 -36641462 + L2 LINE L2 3096 3272 0 217 330 155 0 chr3 190884611 190884714 -36639864 + MIR SINE MIR 124 242 -20 513 131 0 0 chr3 190884754 190884838 -36639740 + (CA)n Simple_repeat Simple_repeat 2 85 0 689 241 67 59 chr3 190885418 190885671 -36638907 + MIR SINE MIR 4 258 -4 294 186 89 46 chr3 190886537 190886642 -36637936 + MIR SINE MIR 44 154 -63 1439 121 69 98 chr3 190887065 190887412 -36637166 - MER1B DNA MER1_type 0 337 1 189 74 0 0 chr3 190887514 190887541 -36637037 + (TTG)n Simple_repeat Simple_repeat 1 27 0 6598 77 18 0 chr3 190887731 190888918 -36635660 + L1PA8 LINE L1 4962 6164 -8 748 157 59 39 chr3 190889009 190889162 -36635416 - AluJo SINE Alu -80 232 77 411 268 149 56 chr3 190889211 190889749 -36634829 - HAL1 LINE L1 -191 2316 1729 210 294 11 100 chr3 190890827 190891007 -36633571 - L2 LINE L2 -9 3304 3141 211 318 34 47 chr3 190891174 190891322 -36633256 - MIR SINE MIR -56 206 61 6845 38 6 1 chr3 190892114 190892953 -36631625 - L1PA3 LINE L1 -2 6153 5311 25005 191 34 36 chr3 190992954 191000696 -36523882 - HERVH LTR ERV1 -184 7529 1 3233 100 7 13 chr3 191000698 191001149 -36523429 - LTR7 LTR ERV1 -2 448 1 268 250 57 0 chr3 191001151 191001239 -36523339 - L1MC4 LINE L1 -1340 6702 6610 313 301 92 31 chr3 191001341 191001504 -36523074 + MLT1J1 LTR MaLR 104 276 -170 628 294 69 44 chr3 191001854 191002174 -36522404 + MLT1J1 LTR MaLR 64 391 -55 207 88 0 0 chr3 191002524 191002558 -36522020 + (TC)n Simple_repeat Simple_repeat 1 34 0 288 0 0 0 chr3 191002558 191002590 -36521988 + (TG)n Simple_repeat Simple_repeat 1 32 0 258 229 0 0 chr3 191003089 191003137 -36521441 - MER5A DNA MER1_type 0 189 142 1448 100 9 9 chr3 191003137 191003347 -36521231 + AluSg/x SINE Alu 95 304 -8 722 193 7 7 chr3 191003349 191003484 -36521094 - MER5A DNA MER1_type -54 135 1 291 114 0 0 chr3 191003515 191003559 -36521019 + (TA)n Simple_repeat Simple_repeat 2 45 0 1524 221 0 10 chr3 191003674 191003968 -36520610 + AluJb SINE Alu 1 291 -21 1910 154 126 18 chr3 191004484 191004873 -36519705 - MER95 LTR ERV 0 431 1 3244 65 12 5 chr3 191004879 191005278 -36519300 + L1PA8 LINE L1 5767 6168 -4 446 328 70 13 chr3 191005478 191005707 -36518871 - MLT1J LTR MaLR -139 372 131 266 202 64 20 chr3 191006225 191006333 -36518245 + L1 LINE L1 4771 4881 -1265 * 5448 108 9 0 chr3 191006332 191007254 -36517324 + L1PA14 LINE L1 5056 5982 -179 313 83 17 67 chr3 191007253 191007313 -36517265 - L1P4 LINE L1 -636 5525 5469 * 1345 87 0 38 chr3 191007314 191007497 -36517081 + L1PA14 LINE L1 5984 6159 -2 268 304 85 50 chr3 191007517 191007718 -36516860 + MLT1K LTR MaLR 190 397 -191 1112 258 117 20 chr3 191007939 191008450 -36516128 - L1MEc LINE L1 -4294 2102 1542 713 282 94 31 chr3 191008500 191009210 -36515368 - L1MEc LINE L1 -4961 1435 681 1650 207 135 17 chr3 191010310 191010778 -36513800 + Charlie1b DNA MER1_type 1 523 0 273 196 0 0 chr3 191010783 191010839 -36513739 + (CATATA)n Simple_repeat Simple_repeat 2 57 0 1696 354 41 20 chr3 191012930 191013594 -36510984 + MER115 DNA AcHobo 1 678 -15 439 295 111 67 chr3 191015043 191015358 -36509220 - MLT1J LTR MaLR -182 329 1 2179 159 22 13 chr3 191015700 191016124 -36508454 + Tigger2 DNA MER2_type 1 2718 0 32 43 0 0 chr3 191016898 191016944 -36507634 + AT_rich Low_complexity Low_complexity 1 46 0 820 156 14 14 chr3 191016961 191017102 -36507476 - AluJb SINE Alu -171 141 1 1970 109 28 0 chr3 191017467 191017751 -36506827 - AluSq SINE Alu -21 292 1 639 356 121 33 chr3 191017901 191018788 -36505790 + L2 LINE L2 1773 2737 -577 840 181 104 84 chr3 191018906 191019155 -36505423 + LOR1a LTR ERV1 238 491 -6 1505 274 103 54 chr3 191019203 191021037 -36503541 - L1MCc LINE L1 -3591 3350 1275 208 349 147 0 chr3 191022016 191022125 -36502453 + L2 LINE L2 2933 3057 -215 218 341 149 44 chr3 191022296 191022798 -36501780 - L2 LINE L2 -612 2702 2148 225 65 0 0 chr3 191022811 191022842 -36501736 - L1M1 LINE L1 -497 5803 5773 363 258 21 0 chr3 191024117 191024198 -36500380 + L1MC4 LINE L1 6614 6699 -1343 1856 160 0 3 chr3 191024198 191024485 -36500093 - AluSx SINE Alu -26 286 1 363 258 21 0 chr3 191024485 191024496 -36500082 + L1MC4 LINE L1 6699 6708 -1334 5801 127 37 21 chr3 191024501 191025609 -36498969 - L1MA6 LINE L1 -4 6296 5174 401 326 110 4 chr3 191025675 191025902 -36498676 + MIR SINE MIR 12 262 0 1946 91 0 36 chr3 191026664 191026938 -36497640 - AluSg SINE Alu -10 300 37 210 91 0 0 chr3 191027317 191027350 -36497228 + (CA)n Simple_repeat Simple_repeat 2 34 0 683 301 93 13 chr3 191027421 191027647 -36496931 - MIR SINE MIR -1 261 18 235 294 43 22 chr3 191031417 191031509 -36493069 - MIR SINE MIR -51 211 118 1100 179 60 0 chr3 191032148 191032312 -36492266 - AluJo SINE Alu -14 298 118 398 20 20 0 chr3 191032312 191032363 -36492215 + (TTTTA)n Simple_repeat Simple_repeat 2 53 0 1100 179 60 0 chr3 191032363 191032399 -36492179 - AluJo SINE Alu -194 118 86 864 276 8 35 chr3 191033508 191033765 -36490813 - MIR SINE MIR 0 262 13 25 0 0 0 chr3 191034844 191034869 -36489709 + AT_rich Low_complexity Low_complexity 1 25 0 192 169 34 17 chr3 191034952 191035011 -36489567 + GA-rich Low_complexity Low_complexity 2 61 0 2283 103 10 31 chr3 191035443 191035830 -36488748 + HERVH LTR ERV1 7335 7713 0 2400 105 131 3 chr3 191035832 191036222 -36488356 + LTR7 LTR ERV1 4 443 -7 2437 82 130 10 chr3 191036332 191036724 -36487854 + LTR7 LTR ERV1 1 439 -11 16756 94 18 23 chr3 191036735 191039684 -36484894 + HERVH LTR ERV1 1 2995 -4718 6155 86 3 2 chr3 191039663 191040516 -36484062 + HERVH LTR ERV1 3140 3993 -3720 * 4493 137 0 1 chr3 191040518 191041181 -36483397 + HERVH LTR ERV1 4488 5149 -2564 1357 139 19 0 chr3 191041182 191041398 -36483180 + HERVH LTR ERV1 5600 5819 -1894 * 2322 106 48 13 chr3 191041396 191041775 -36482803 + HERVH LTR ERV1 7322 7713 0 2470 97 119 5 chr3 191041775 191042177 -36482401 + LTR7 LTR ERV1 1 448 -2 308 241 9 74 chr3 191042286 191042394 -36482184 - MIR3 SINE MIR -23 185 85 3903 159 50 36 chr3 191042901 191043673 -36480905 + LTR39 LTR ERV1 1 783 0 772 267 25 25 chr3 191044323 191044563 -36480015 + L2 LINE L2 3074 3313 0 2422 185 37 51 chr3 191044955 191045449 -36479129 + MER34B LTR ERV1 2 488 -77 1766 188 0 0 chr3 191045449 191045742 -36478836 - AluJo SINE Alu -19 293 1 2422 185 37 51 chr3 191045742 191045819 -36478759 + MER34B LTR ERV1 488 565 0 220 303 50 50 chr3 191045824 191045923 -36478655 + MIR SINE MIR 3 101 -161 269 331 111 28 chr3 191046042 191046223 -36478355 + MIR SINE MIR 48 243 -19 2419 64 0 0 chr3 191048133 191048453 -36476125 - AluY SINE Alu 0 311 1 21 36 0 0 chr3 191049841 191049869 -36474709 + AT_rich Low_complexity Low_complexity 1 28 0 204 241 167 0 chr3 191050212 191050266 -36474312 - L2 LINE L2 0 3272 3210 * 438 294 124 6 chr3 191050225 191050402 -36474176 - MIR SINE MIR -16 246 49 201 298 0 53 chr3 191050438 191050495 -36474083 - L2 LINE L2 -33 3239 3186 191 299 107 48 chr3 191050684 191050871 -36473707 + L2 LINE L2 2374 2571 -743 217 329 12 24 chr3 191050899 191050984 -36473594 + MIR SINE MIR 58 141 -121 471 348 49 6 chr3 191052429 191052593 -36471985 + MIR3 SINE MIR 16 186 -22 22 56 0 0 chr3 191052817 191052853 -36471725 + AT_rich Low_complexity Low_complexity 1 36 0 542 240 180 7 chr3 191053066 191053216 -36471362 - MER5A DNA MER1_type -1 188 13 622 215 0 107 chr3 191053265 191053369 -36471209 - MER5B DNA MER1_type -20 158 78 2437 43 0 0 chr3 191053369 191053678 -36470900 - AluY SINE Alu 0 311 3 622 215 0 107 chr3 191053678 191053749 -36470829 - MER5B DNA MER1_type -100 78 1 2029 124 7 0 chr3 191054340 191054650 -36469928 - AluSx SINE Alu 0 313 2 243 178 0 0 chr3 191055357 191055402 -36469176 + L2 LINE L2 3256 3300 -13 342 333 123 0 chr3 191055982 191056144 -36468434 - MIR SINE MIR -28 234 53 202 269 39 13 chr3 191057036 191057114 -36467464 - MIR SINE MIR -87 175 96 316 289 21 21 chr3 191058594 191058691 -36465887 + MIR3 SINE MIR 106 202 -6 280 338 130 19 chr3 191059676 191059883 -36464695 - MIR SINE MIR -21 241 12 249 135 0 0 chr3 191060408 191060445 -36464133 - MSTA LTR MaLR 0 428 392 291 54 0 0 chr3 191060452 191060489 -36464089 + (GAAAA)n Simple_repeat Simple_repeat 3 39 0 2174 142 83 8 chr3 191060489 191060862 -36463716 - MSTA LTR MaLR -27 401 1 351 0 0 0 chr3 191061009 191061048 -36463530 + (TG)n Simple_repeat Simple_repeat 2 40 0 295 258 87 15 chr3 191061504 191061678 -36462900 + MIR SINE MIR 46 235 -27 416 268 104 24 chr3 191061739 191061887 -36462691 - MIR SINE MIR -48 214 58 227 413 41 0 chr3 191062483 191062604 -36461974 - L2 LINE L2 -11 3261 3136 2368 68 0 37 chr3 191063097 191063420 -36461158 - AluY SINE Alu 0 311 1 303 307 79 31 chr3 191063597 191063724 -36460854 + MIR3 SINE MIR 31 163 -45 26 0 0 27 chr3 191064086 191064105 -36460473 + AT_rich Low_complexity Low_complexity 1 20 -16 4304 69 7 0 chr3 191064105 191064670 -36459908 - L1PA8 LINE L1 -2 6170 5602 26 0 0 27 chr3 191064670 191064687 -36459891 + AT_rich Low_complexity Low_complexity 20 36 0 703 265 66 63 chr3 191064820 191065026 -36459552 - MLT2C1 LTR ERVL 0 397 188 1371 59 0 0 chr3 191065026 191065196 -36459382 - L1PA5 LINE L1 -9 6145 5976 703 265 66 63 chr3 191065196 191065385 -36459193 - MLT2C1 LTR ERVL -209 188 1 545 188 72 7 chr3 191065806 191065944 -36458634 + MER69 DNA AcHobo 2380 2526 0 1125 274 75 36 chr3 191066606 191066782 -36457796 - HAL1b LINE L1 -525 823 655 2404 62 0 33 chr3 191066782 191067088 -36457490 - AluY SINE Alu -15 296 1 1125 274 75 36 chr3 191067088 191067541 -36457037 - HAL1b LINE L1 -693 655 161 2562 110 3 3 chr3 191067541 191067896 -36456682 + THE1A LTR MaLR 1 355 0 1125 274 75 36 chr3 191067896 191067967 -36456611 - HAL1b LINE L1 -1187 161 94 24 32 0 0 chr3 191067974 191068005 -36456573 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr3 191068185 191068210 -36456368 + AT_rich Low_complexity Low_complexity 1 25 0 2105 109 0 55 chr3 191069197 191069527 -36455051 - AluSx SINE Alu 0 312 1 232 287 107 33 chr3 191069773 191069923 -36454655 + L2 LINE L2 3152 3312 -1 23 0 0 0 chr3 191070671 191070694 -36453884 + AT_rich Low_complexity Low_complexity 1 23 0 284 270 14 27 chr3 191071642 191071716 -36452862 - MIR3 SINE MIR -131 77 5 209 191 0 0 chr3 191071957 191071999 -36452579 + (TG)n Simple_repeat Simple_repeat 2 43 0 228 279 8 47 chr3 191072006 191072135 -36452443 + L1MC4 LINE L1 7793 7916 -126 344 258 26 0 chr3 191072227 191072346 -36452232 + L1MC4 LINE L1 7883 7994 -1 359 330 62 0 chr3 191072374 191072486 -36452092 + L3 LINE CR1 1443 1561 -16 3354 152 16 3 chr3 191074147 191074725 -36449853 + L1PA16 LINE L1 5576 6160 -6 199 322 47 60 chr3 191074773 191074922 -36449656 + L2 LINE L2 2907 3053 -219 225 132 0 0 chr3 191075256 191075294 -36449284 + (TGAG)n Simple_repeat Simple_repeat 3 40 0 2275 117 13 58 chr3 191075299 191075676 -36448902 - MSTC LTR MaLR -68 360 1 26 0 0 0 chr3 191077043 191077069 -36447509 + AT_rich Low_complexity Low_complexity 1 26 0 216 0 0 0 chr3 191077266 191077290 -36447288 + (T)n Simple_repeat Simple_repeat 1 24 0 259 316 0 26 chr3 191079564 191079640 -36444938 + MER5A DNA MER1_type 62 135 -54 2659 30 0 0 chr3 191080374 191080679 -36443899 - AluYa5 SINE Alu -6 305 1 1213 221 156 27 chr3 191081065 191081476 -36443102 + MLT1C LTR MaLR 1 464 -3 278 305 114 6 chr3 191082151 191082318 -36442260 - L2 LINE L2 -5 3308 3124 1506 155 10 31 chr3 191082920 191083211 -36441367 - AluJo SINE Alu -16 296 12 1726 159 32 78 chr3 191083558 191083967 -36440611 - MLT1B LTR MaLR 0 390 1 286 349 9 0 chr3 191084330 191084436 -36440142 - MIR SINE MIR -108 154 48 22 80 0 0 chr3 191084488 191084538 -36440040 + AT_rich Low_complexity Low_complexity 1 50 0 182 196 39 20 chr3 191084574 191084625 -36439953 + L2 LINE L2 3262 3313 0 2039 138 3 3 chr3 191085312 191085616 -36438962 - AluSx SINE Alu -8 304 1 23 68 0 0 chr3 191086143 191086187 -36438391 + AT_rich Low_complexity Low_complexity 1 44 0 4327 225 28 11 chr3 191087706 191089076 -36435502 + L1PA16 LINE L1 2026 3432 -3417 4344 140 103 5 chr3 191089095 191090240 -36434338 + L1PA16 LINE L1 5311 6566 -303 240 59 0 0 chr3 191090240 191090274 -36434304 + (CA)n Simple_repeat Simple_repeat 2 35 0 4344 140 103 5 chr3 191090274 191090601 -36433977 + L1PA16 LINE L1 6566 6860 -9 23 54 0 0 chr3 191090601 191090638 -36433940 + AT_rich Low_complexity Low_complexity 1 37 0 879 289 132 35 chr3 191090788 191091337 -36433241 + L2 LINE L2 2707 3311 -2 601 212 159 0 chr3 191091979 191092130 -36432448 - MER5A DNA MER1_type -6 183 9 488 221 150 28 chr3 191092742 191092955 -36431623 + LTR37A LTR ERV1 7 245 -181 585 288 31 35 chr3 191093365 191093591 -36430987 + MER92C LTR ERV1 1 225 -329 402 141 0 0 chr3 191093613 191093677 -36430901 + MER92C LTR ERV1 491 554 0 25 65 0 0 chr3 191094226 191094272 -36430306 + AT_rich Low_complexity Low_complexity 1 46 0 466 341 40 0 chr3 191094432 191094608 -36429970 + MIR SINE MIR 18 200 -62 709 278 19 5 chr3 191094618 191094827 -36429751 - MIR SINE MIR -3 259 48 532 252 51 113 chr3 191095161 191095725 -36428853 + LTR41 LTR ERVL 169 697 -76 394 305 155 15 chr3 191096122 191096322 -36428256 - MIR SINE MIR -1 261 34 192 392 39 0 chr3 191096351 191096453 -36428125 + L2 LINE L2 2641 2746 -568 508 285 51 85 chr3 191096958 191098174 -36426404 + L1MCc LINE L1 1129 2518 -4604 317 361 76 59 chr3 191098275 191098758 -36425820 + L2 LINE L2 2731 3222 -50 200 183 0 83 chr3 191099366 191099426 -36425152 + GA-rich Low_complexity Low_complexity 2 56 0 1576 127 53 4 chr3 191099944 191100188 -36424390 - AluSc SINE Alu -53 256 1 2977 162 86 70 chr3 191100299 191101040 -36423538 - LTR48 LTR ERV1 -30 757 5 243 254 32 16 chr3 191101245 191101308 -36423270 + L3b LINE CR1 1279 1342 -241 21 0 0 0 chr3 191101477 191101498 -36423080 + AT_rich Low_complexity Low_complexity 1 21 0 703 236 16 26 chr3 191103064 191103255 -36421323 - MER5A DNA MER1_type 0 189 1 344 307 105 33 chr3 191103277 191103430 -36421148 - MIR SINE MIR -77 185 22 334 263 21 11 chr3 191103459 191103554 -36421024 - MIR SINE MIR -10 252 157 2192 194 29 5 chr3 191103991 191104409 -36420169 + MSTA LTR MaLR 1 428 0 8778 170 50 12 chr3 191104409 191105381 -36419197 + MSTA-int LTR MaLR 1 1059 -592 6081 56 22 0 chr3 191105381 191106144 -36418434 - LTR17 LTR ERV1 0 780 1 8778 170 50 12 chr3 191106144 191106761 -36417817 + MSTA-int LTR MaLR 1059 1651 0 1739 165 171 11 chr3 191106761 191107130 -36417448 + MSTA LTR MaLR 1 428 0 288 243 15 0 chr3 191107145 191107228 -36417350 + MIR SINE MIR 63 146 -62 21 0 0 0 chr3 191107312 191107333 -36417245 + AT_rich Low_complexity Low_complexity 1 21 0 207 0 0 0 chr3 191107551 191107574 -36417004 + (CAAAAA)n Simple_repeat Simple_repeat 2 24 0 2351 212 83 42 chr3 191108608 191109279 -36415299 - L1MC3 LINE L1 -9 7776 7078 196 302 0 19 chr3 191110473 191110526 -36414052 + L2 LINE L2 3251 3302 -11 830 285 30 4 chr3 191110600 191110835 -36413743 + MIR SINE MIR 21 261 -1 280 311 112 24 chr3 191111490 191111696 -36412882 + L3 LINE CR1 1276 1499 -78 263 290 164 41 chr3 191111842 191112397 -36412181 + L1ME4a LINE L1 5483 6105 -16 1313 97 0 0 chr3 191112397 191112562 -36412016 + AluSg SINE Alu 1 165 -145 22 56 0 0 chr3 191113321 191113357 -36411221 + AT_rich Low_complexity Low_complexity 1 36 0 19392 187 16 25 chr3 191113830 191116923 -36407655 + L1PA10 LINE L1 236 3481 -2980 378 0 0 0 chr3 191116923 191116965 -36407613 + (CA)n Simple_repeat Simple_repeat 2 43 0 19392 187 16 25 chr3 191116965 191118394 -36406184 + L1PA10 LINE L1 3481 4921 -1540 4900 37 7 0 chr3 191118402 191118995 -36405583 - L1PA4 LINE L1 -5 6150 5554 * 6312 94 4 13 chr3 191118993 191120044 -36404534 + L1PA10 LINE L1 5439 6481 -2 1522 174 39 7 chr3 191120191 191120315 -36404263 + AluJb SINE Alu 5 124 -188 180 0 0 0 chr3 191120315 191120335 -36404243 + (TG)n Simple_repeat Simple_repeat 1 20 0 1522 174 39 7 chr3 191120335 191120492 -36404086 + AluJb SINE Alu 124 295 -17 504 0 0 0 chr3 191122199 191122255 -36402323 + (TAGA)n Simple_repeat Simple_repeat 2 57 0 222 344 24 48 chr3 191122757 191122882 -36401696 - L2 LINE L2 0 3313 3192 251 293 13 0 chr3 191123408 191123483 -36401095 - Charlie8 DNA MER1_type -1 2416 2341 7734 119 7 10 chr3 191123615 191125653 -36398925 - L1PA8 LINE L1 0 6172 4138 230 343 78 0 chr3 191126461 191126563 -36398015 + MIR SINE MIR 34 143 -65 377 255 21 12 chr3 191126987 191127099 -36397479 - MLT1J LTR MaLR -284 173 52 640 280 26 10 chr3 191127246 191127439 -36397139 + L2 LINE L2 2187 2382 -932 364 326 17 29 chr3 191127480 191127655 -36396923 + MLT1J LTR MaLR 26 198 -313 1918 213 39 60 chr3 191127680 191128216 -36396362 + L1ME1 LINE L1 5511 6035 -131 276 185 34 101 chr3 191128383 191128502 -36396076 + L1ME1 LINE L1 6051 6161 -5 12582 98 17 0 chr3 191128577 191131264 -36393314 + L1PA8 LINE L1 3485 6170 -2 584 304 45 42 chr3 191131385 191131671 -36392907 + MLT1J LTR MaLR 217 503 -8 379 330 153 30 chr3 191131710 191132310 -36392268 + L2 LINE L2 2601 3313 0 324 374 70 26 chr3 191132825 191133052 -36391526 + L2 LINE L2 3036 3272 0 273 267 0 35 chr3 191133859 191133945 -36390633 + CT-rich Low_complexity Low_complexity 1 83 0 568 170 38 19 chr3 191134205 191134311 -36390267 + Tigger3(Golem) DNA MER2_type 1 108 -2921 3340 149 116 7 chr3 191134311 191134983 -36389595 + Tigger3(Golem) DNA MER2_type 2284 3028 -1 364 270 70 0 chr3 191136211 191136311 -36388267 + L2 LINE L2 3158 3264 -8 843 220 65 116 chr3 191136951 191137441 -36387137 - LTR37B LTR ERV1 0 468 4 378 296 276 10 chr3 191138066 191138363 -36386215 + L2 LINE L2 2938 3313 0 476 270 84 49 chr3 191138583 191138809 -36385769 - MIR SINE MIR -14 248 15 360 0 0 0 chr3 191139159 191139199 -36385379 + (TG)n Simple_repeat Simple_repeat 1 40 0 317 373 30 15 chr3 191139344 191139478 -36385100 + MIR SINE MIR 8 143 -119 331 329 143 39 chr3 191139765 191140051 -36384527 - L1M2 LINE L1 -5528 1321 1006 411 323 48 16 chr3 191140677 191140866 -36383712 + L2 LINE L2 3112 3306 -7 22 70 0 0 chr3 191141658 191141701 -36382877 + AT_rich Low_complexity Low_complexity 1 43 0 2337 124 30 16 chr3 191141874 191142244 -36382334 - THE1C LTR MaLR 0 375 1 45 0 0 0 chr3 191142356 191142401 -36382177 + AT_rich Low_complexity Low_complexity 1 45 0 573 298 59 48 chr3 191144223 191144453 -36380125 - MARNA DNA Mariner -155 431 194 2253 116 0 0 chr3 191144453 191144755 -36379823 - AluSx SINE Alu -10 302 1 573 298 59 48 chr3 191144755 191144896 -36379682 - MARNA DNA Mariner -392 194 56 232 400 0 8 chr3 191145357 191145482 -36379096 + L2 LINE L2 3138 3261 -11 339 206 44 0 chr3 191146128 191146196 -36378382 + Tigger2 DNA MER2_type 1 71 -2647 * 2069 167 91 7 chr3 191146193 191146600 -36377978 + Tigger2 DNA MER2_type 2278 2718 0 1110 170 0 54 chr3 191146688 191146911 -36377667 + MER2 DNA MER2_type 1 211 -134 1855 149 10 0 chr3 191147843 191148132 -36376446 - AluSx SINE Alu -20 292 1 227 324 76 9 chr3 191148441 191148546 -36376032 - L2 LINE L2 -3 3310 3199 193 286 0 107 chr3 191149448 191149560 -36375018 - L2 LINE L2 -516 2798 2699 702 319 77 59 chr3 191149669 191150432 -36374146 + L2 LINE L2 2401 3165 -107 22 35 0 0 chr3 191151619 191151648 -36372930 + AT_rich Low_complexity Low_complexity 1 29 0 27 29 0 0 chr3 191151780 191151814 -36372764 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr3 191151895 191151917 -36372661 + AT_rich Low_complexity Low_complexity 1 22 0 339 307 58 22 chr3 191153372 191153509 -36371069 - MER91A DNA MER1_type -13 183 42 469 234 8 144 chr3 191154385 191154586 -36369992 - MIR3 SINE MIR -1 207 25 406 313 70 0 chr3 191154849 191154977 -36369601 + MIR SINE MIR 92 228 -34 1761 129 100 0 chr3 191155550 191155829 -36368749 - AluSx SINE Alu 0 312 6 377 242 118 12 chr3 191156071 191156232 -36368346 + L1ME4a LINE L1 5707 5884 -237 736 117 23 31 chr3 191157494 191157622 -36366956 + L1PA16 LINE L1 6040 6166 0 21 0 0 0 chr3 191157999 191158020 -36366558 + AT_rich Low_complexity Low_complexity 1 21 0 333 68 0 0 chr3 191158683 191158727 -36365851 + (TA)n Simple_repeat Simple_repeat 1 44 0 432 307 87 14 chr3 191159216 191159503 -36365075 - L1ME LINE L1 -302 5819 5512 215 313 16 0 chr3 191159974 191160038 -36364540 - MIR SINE MIR -147 115 51 3729 98 30 0 chr3 191160922 191161460 -36363118 + MER41A LTR ERV1 1 554 0 668 90 0 20 chr3 191161755 191161855 -36362723 + MER4A LTR ERV1 1 98 -566 1727 136 38 22 chr3 191161856 191162194 -36362384 + MER4A LTR ERV1 262 663 -1 1455 109 31 27 chr3 191162198 191162454 -36362124 + L1P4 LINE L1 5268 5524 -642 33 56 0 0 chr3 191163505 191163559 -36361019 + AT_rich Low_complexity Low_complexity 1 54 0 31 0 0 0 chr3 191263885 191263916 -36260662 + AT_rich Low_complexity Low_complexity 1 31 0 363 344 108 0 chr3 191264018 191264213 -36260365 - L2 LINE L2 -707 2607 2392 22 35 0 0 chr3 191264263 191264292 -36260286 + AT_rich Low_complexity Low_complexity 1 29 0 298 342 114 39 chr3 191265543 191265824 -36258754 - L2 LINE L2 -789 2525 2224 1104 71 0 0 chr3 191265971 191266111 -36258467 - MER4E LTR ERV1 -626 140 1 38 0 0 0 chr3 191266146 191266184 -36258394 + AT_rich Low_complexity Low_complexity 1 38 0 242 216 0 0 chr3 191266210 191266261 -36258317 - L1 LINE L1 -1162 4984 4934 * 2328 192 80 0 chr3 191266259 191266855 -36257723 + L1 LINE L1 3092 3748 -2398 1376 199 11 39 chr3 191267051 191267371 -36257207 - AluJo SINE Alu 0 318 7 471 300 32 37 chr3 191268737 191268927 -36255651 - MLT1J LTR MaLR -322 189 1 222 237 158 13 chr3 191269288 191269364 -36255214 - L2 LINE L2 0 3272 3186 409 352 143 29 chr3 191269948 191270493 -36254085 - L2 LINE L2 -348 2966 2360 1981 106 0 0 chr3 191270639 191270904 -36253674 + AluY SINE Alu 35 299 -12 223 223 21 43 chr3 191271011 191271105 -36253473 + (TATATG)n Simple_repeat Simple_repeat 5 96 0 685 297 63 24 chr3 191271120 191271453 -36253125 - LTR52 LTR ERVL -7 414 69 2193 150 28 19 chr3 191271607 191271968 -36252610 - THE1B LTR MaLR 0 364 1 11077 122 2 0 chr3 191271968 191273545 -36251033 - THE1B-int LTR MaLR 0 1580 1 1518 172 144 28 chr3 191273545 191273871 -36250707 - THE1B LTR MaLR 0 364 1 10952 114 15 3 chr3 191273871 191275395 -36249183 + THE1B-int LTR MaLR 39 1580 0 1167 177 71 29 chr3 191275395 191275710 -36248868 + THE1B LTR MaLR 1 355 0 344 47 0 0 chr3 191275710 191275753 -36248825 - THE1B-int LTR MaLR -1537 43 1 2155 120 53 36 chr3 191275753 191276111 -36248467 - THE1B LTR MaLR 0 364 1 206 296 0 11 chr3 191276357 191276445 -36248133 + (TA)n Simple_repeat Simple_repeat 2 88 0 425 229 107 29 chr3 191276873 191277013 -36247565 + LTR40a LTR ERVL 1 151 -368 785 314 34 25 chr3 191277158 191277480 -36247098 + LTR40a LTR ERVL 180 504 -15 2242 204 131 37 chr3 191277511 191278218 -36246360 + LTR1B LTR ERV1 2 778 -7 1897 225 8 68 chr3 191278224 191278753 -36245825 + HUERS-P2 LTR ERV1 1 497 -2591 214 195 0 0 chr3 191280318 191280359 -36244219 + (TATAA)n Simple_repeat Simple_repeat 5 45 0 30 27 0 0 chr3 191281074 191281111 -36243467 + AT_rich Low_complexity Low_complexity 1 37 0 1377 223 19 48 chr3 191282919 191283295 -36241283 + MLT1A1 LTR MaLR 1 365 0 28 48 0 0 chr3 191284042 191284084 -36240494 + AT_rich Low_complexity Low_complexity 1 42 0 9269 128 11 1 chr3 191284165 191284663 -36239915 - L1PA8 LINE L1 -2 6170 5679 2026 128 3 33 chr3 191284663 191284969 -36239609 - AluSp SINE Alu -11 302 6 9269 128 11 1 chr3 191284969 191286736 -36237842 - L1PA8 LINE L1 -493 5679 3913 214 234 122 75 chr3 191287182 191287289 -36237289 - L2 LINE L2 -16 3256 3145 243 322 116 8 chr3 191287362 191287483 -36237095 - L2 LINE L2 -468 2846 2713 25 51 0 0 chr3 191287678 191287717 -36236861 + AT_rich Low_complexity Low_complexity 1 39 0 2079 149 35 73 chr3 191287811 191288262 -36236316 - Tigger2a DNA MER2_type 0 434 1 28 48 0 0 chr3 191288499 191288541 -36236037 + AT_rich Low_complexity Low_complexity 1 42 0 210 259 17 0 chr3 191289969 191290027 -36234551 + GA-rich Low_complexity Low_complexity 2 60 0 2002 122 10 19 chr3 191291296 191291608 -36232970 + AluSp SINE Alu 1 309 -4 1336 219 109 3 chr3 191291681 191291992 -36232586 - MER2 DNA MER2_type 0 344 1 2195 109 0 0 chr3 191293672 191293993 -36230585 - AluSx SINE Alu 0 321 1 2212 168 57 7 chr3 191295353 191295757 -36228821 - MSTA LTR MaLR -2 426 3 214 265 0 0 chr3 191296138 191296187 -36228391 + (CATA)n Simple_repeat Simple_repeat 2 50 0 496 234 80 84 chr3 191296560 191296799 -36227779 - MER52A LTR ERV1 -1517 238 1 1717 198 81 28 chr3 191296800 191297194 -36227384 - HUERS-P2 LTR ERV1 -2 3086 2672 1388 178 0 4 chr3 191297209 191297445 -36227133 - MER52A-int LTR ERV1 -1299 3918 3684 * 8744 138 52 48 chr3 191297442 191297967 -36226611 - MER52A-int LTR ERV1 -2212 4784 4263 2371 73 10 3 chr3 191297967 191298270 -36226308 - AluY SINE Alu -6 305 1 8744 138 52 48 chr3 191298270 191299153 -36225425 - MER52A-int LTR ERV1 -2733 4263 3385 2196 89 0 65 chr3 191299153 191299477 -36225101 - AluY SINE Alu -8 303 1 8744 138 52 48 chr3 191299477 191300205 -36224373 - MER52A-int LTR ERV1 -3611 3385 2661 1968 150 10 0 chr3 191300205 191300498 -36224080 - AluSg1 SINE Alu -13 296 1 8744 138 52 48 chr3 191300498 191300625 -36223953 - MER52A-int LTR ERV1 -4335 2661 1850 314 89 0 22 chr3 191300623 191300668 -36223910 - MER52A-int LTR ERV1 -925 3955 3912 * 5879 152 65 78 chr3 191300674 191301901 -36222677 - MER52A-int LTR ERV1 -487 4730 3489 2150 121 0 9 chr3 191301901 191302216 -36222362 - AluSx SINE Alu 0 312 1 5879 152 65 78 chr3 191302216 191302333 -36222245 - MER52A-int LTR ERV1 -1728 3489 411 227 186 0 17 chr3 191302333 191302392 -36222186 + GA-rich Low_complexity Low_complexity 3 60 0 2638 164 4 29 chr3 191302393 191302845 -36221733 - MER52A-int LTR ERV1 -6650 441 1 8028 195 107 9 chr3 191302845 191304441 -36220137 - MER52A LTR ERV1 0 1755 4 280 328 80 80 chr3 191304875 191305189 -36219389 - L2 LINE L2 -90 3182 2869 329 343 65 36 chr3 191305315 191305624 -36218954 - L2 LINE L2 -656 2658 2341 382 311 68 5 chr3 191306061 191306251 -36218327 + MIR SINE MIR 61 262 0 202 255 0 0 chr3 191306862 191306913 -36217665 - MIR SINE MIR -59 203 153 762 222 36 40 chr3 191307947 191308172 -36216406 + MLT2B1 LTR ERVL 3 226 -188 318 165 0 0 chr3 191308553 191308632 -36215946 + (TA)n Simple_repeat Simple_repeat 2 80 0 202 262 49 0 chr3 191308894 191308955 -36215623 - L2 LINE L2 -1877 1437 1374 2079 119 3 35 chr3 191309087 191309398 -36215180 + AluSg SINE Alu 1 301 -9 423 251 86 25 chr3 191309956 191310119 -36214459 - MER105 DNA DNA -31 173 1 1376 162 57 0 chr3 191310351 191310616 -36213962 - L1MB1 LINE L1 0 6168 5889 2544 214 43 0 chr3 191310616 191311177 -36213401 + L1MB1 LINE L1 5304 5888 -280 341 43 21 0 chr3 191311607 191311654 -36212924 + (GAAAA)n Simple_repeat Simple_repeat 2 49 0 287 295 77 0 chr3 191312187 191312265 -36212313 + L2 LINE L2 3151 3234 -38 1065 245 63 44 chr3 191312647 191313010 -36211568 - MLT1A2 LTR MaLR -4 370 1 1225 204 19 19 chr3 191313979 191314292 -36210286 - L1MA9 LINE L1 -10 6302 5990 1305 195 111 26 chr3 191314295 191314328 -36210250 - L1MA9 LINE L1 -486 5826 5797 258 32 0 0 chr3 191314328 191314359 -36210219 + (TG)n Simple_repeat Simple_repeat 2 32 0 1305 195 111 26 chr3 191314359 191314669 -36209909 - L1MA9 LINE L1 -515 5797 5454 * 4428 249 42 15 chr3 191314654 191314874 -36209704 - L1MA9 LINE L1 -2061 4085 3872 2148 132 7 0 chr3 191314874 191315184 -36209394 + AluSx SINE Alu 1 312 0 4428 249 42 15 chr3 191315184 191316548 -36208030 - L1MA9 LINE L1 -2274 3872 2448 2048 132 0 0 chr3 191316567 191316854 -36207724 - AluSc SINE Alu -22 287 1 2206 136 19 30 chr3 191317075 191317443 -36207135 + THE1B LTR MaLR 1 364 0 4480 78 0 0 chr3 191317443 191318029 -36206549 + THE1B-int LTR MaLR 1 586 -994 252 254 30 0 chr3 191318036 191318103 -36206475 - L1MEd LINE L1 -5737 382 314 23 0 0 0 chr3 191318702 191318725 -36205853 + AT_rich Low_complexity Low_complexity 1 23 0 596 127 9 64 chr3 191318772 191318861 -36205717 + AluSg SINE Alu 4 87 -223 6735 65 42 0 chr3 191318861 191319722 -36204856 - MER11D LTR ERVK 0 897 1 596 127 9 64 chr3 191319722 191319742 -36204836 + AluSg SINE Alu 87 107 -203 * 632 134 252 0 chr3 191319740 191319859 -36204719 - AluSq SINE Alu -159 154 6 347 162 27 0 chr3 191319873 191319947 -36204631 + CT-rich Low_complexity Low_complexity 3 78 0 189 0 0 0 chr3 191321212 191321233 -36203345 + (TTTTTG)n Simple_repeat Simple_repeat 2 22 0 22 0 0 0 chr3 191321826 191321848 -36202730 + AT_rich Low_complexity Low_complexity 1 22 0 2383 70 0 3 chr3 191323743 191324055 -36200523 + AluY SINE Alu 1 311 0 2077 132 0 0 chr3 191324956 191325251 -36199327 - AluSx SINE Alu -17 295 1 21 0 0 0 chr3 191325254 191325275 -36199303 + AT_rich Low_complexity Low_complexity 1 21 0 254 254 0 0 chr3 191325281 191325348 -36199230 - L1MA10 LINE L1 -12 6322 6256 2103 141 0 0 chr3 191325368 191325674 -36198904 - AluSx SINE Alu -6 306 1 2100 277 26 28 chr3 191325675 191326455 -36198123 - L1ME1 LINE L1 -54 6112 5335 228 308 0 0 chr3 191326558 191326636 -36197942 + L1MC4 LINE L1 6615 6692 -1350 * 232 247 94 35 chr3 191326583 191326668 -36197910 - L1MC4 LINE L1 -1339 6703 6614 338 61 20 0 chr3 191326839 191326888 -36197690 - L1PA16 LINE L1 -9 6157 6108 4502 172 44 13 chr3 191326888 191327942 -36196636 + L1PA16 LINE L1 5037 6117 -49 1321 277 14 18 chr3 191327938 191328437 -36196141 - L1ME1 LINE L1 -809 5337 4841 * 1589 195 11 54 chr3 191328437 191328688 -36195890 + MLT1A1 LTR MaLR 1 232 -133 2184 103 3 3 chr3 191328688 191328989 -36195589 - AluSc SINE Alu -8 301 1 1589 195 11 54 chr3 191328989 191329106 -36195472 + MLT1A1 LTR MaLR 232 353 -12 644 212 34 0 chr3 191329118 191329264 -36195314 - L1ME1 LINE L1 -1301 4845 4695 22 0 0 0 chr3 191330265 191330287 -36194291 + AT_rich Low_complexity Low_complexity 1 22 0 228 135 0 0 chr3 191330423 191330460 -36194118 + (CA)n Simple_repeat Simple_repeat 2 38 0 190 165 0 59 chr3 191330440 191330525 -36194053 + (CATATA)n Simple_repeat Simple_repeat 1 80 0 * 800 304 51 7 chr3 191330528 191330824 -36193754 + L1MEc LINE L1 123 431 -5965 12143 125 24 19 chr3 191330904 191332843 -36191735 - L1P LINE L1 -4187 1959 11 21 0 0 0 chr3 191332964 191332985 -36191593 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 191333157 191333178 -36191400 + AT_rich Low_complexity Low_complexity 1 21 0 1536 233 37 23 chr3 191333548 191333982 -36190596 + L1M4 LINE L1 4558 4997 -1149 23 0 0 0 chr3 191334504 191334527 -36190051 + AT_rich Low_complexity Low_complexity 1 23 0 1056 129 0 0 chr3 191335618 191335765 -36188813 - AluSg SINE Alu -19 293 147 4408 127 148 30 chr3 191335765 191336769 -36187809 + pTR5 LTR ERV1 743 2025 -413 355 188 62 31 chr3 191336769 191336865 -36187713 + LTR30 LTR ERV1 544 642 -80 1518 97 5 5 chr3 191336868 191337085 -36187493 + pTR5 LTR ERV1 172 388 -2050 864 156 7 0 chr3 191337085 191337220 -36187358 - AluSg SINE Alu -158 152 17 274 273 61 10 chr3 191337576 191337675 -36186903 - L1ME LINE L1 -422 5699 5596 21 0 0 0 chr3 191337954 191337975 -36186603 + AT_rich Low_complexity Low_complexity 1 21 0 220 241 17 17 chr3 191338914 191338972 -36185606 - MER5B DNA MER1_type -119 59 2 21 0 0 0 chr3 191339009 191339030 -36185548 + AT_rich Low_complexity Low_complexity 1 21 0 489 160 90 0 chr3 191339122 191339222 -36185356 + MER3 DNA MER1_type 53 161 -48 41 36 0 0 chr3 191339230 191339285 -36185293 + AT_rich Low_complexity Low_complexity 1 55 0 848 189 242 13 chr3 191339286 191339604 -36184974 + MER3 DNA MER1_type 2234 2624 0 1623 290 39 31 chr3 191339785 191340371 -36184207 - MLT1E LTR MaLR 0 593 3 311 311 98 28 chr3 191340700 191341078 -36183500 - L1MC/D LINE L1 -540 5630 5396 446 345 37 49 chr3 191341120 191341445 -36183133 - L1MC/D LINE L1 -786 5360 5040 645 264 238 7 chr3 191341904 191342181 -36182397 + MLT1I LTR MaLR 61 401 -8 834 301 33 18 chr3 191342231 191342507 -36182071 - MLT1I LTR MaLR -10 399 120 189 121 0 0 chr3 191344039 191344072 -36180506 + (TAAAA)n Simple_repeat Simple_repeat 3 35 0 39 38 0 0 chr3 191344453 191344506 -36180072 + AT_rich Low_complexity Low_complexity 1 53 0 720 235 8 76 chr3 191344635 191344873 -36179705 + LTR1B LTR ERV1 1 222 -604 1150 281 178 35 chr3 191344974 191345990 -36178588 + L2 LINE L2 2135 3295 -18 342 67 0 0 chr3 191346006 191346051 -36178527 + (TA)n Simple_repeat Simple_repeat 1 45 0 577 284 23 17 chr3 191347311 191347487 -36177091 - MER69A DNA AcHobo 0 177 1 1181 186 60 167 chr3 191348064 191348585 -36175993 - MER67D LTR ERV1 0 514 50 7543 194 153 39 chr3 191348615 191350852 -36173726 - L1 LINE L1 -1384 4762 2271 27 35 0 0 chr3 191350892 191350921 -36173657 + GC_rich Low_complexity Low_complexity 1 29 0 308 275 75 81 chr3 191351178 191351498 -36173080 + L1M2 LINE L1 1688 2005 -4844 322 294 47 38 chr3 191351711 191351922 -36172656 + L1MC4a LINE L1 5718 5930 -1878 856 300 126 79 chr3 191353100 191353827 -36170751 - L2 LINE L2 -231 3082 2323 24 32 0 0 chr3 191355303 191355334 -36169244 + AT_rich Low_complexity Low_complexity 1 31 0 180 246 18 70 chr3 191355480 191355537 -36169041 - MIR3 SINE MIR -49 159 106 852 323 110 52 chr3 191356500 191357281 -36167297 - LTR1B LTR ERV1 0 826 1 249 247 14 14 chr3 191357356 191357429 -36167149 - L1ME2 LINE L1 -10 6154 6082 288 122 184 0 chr3 191358266 191358315 -36166263 - MER21A LTR ERV1 -118 813 756 1650 270 115 28 chr3 191358316 191358856 -36165722 - MER21B LTR ERV1 -258 605 19 328 232 43 0 chr3 191358883 191358952 -36165626 - MER21B LTR ERV1 -777 86 15 1836 165 0 19 chr3 191359435 191359750 -36164828 + AluSx SINE Alu 1 309 -3 753 246 26 5 chr3 191360847 191361038 -36163540 - MER58 DNA MER1_type -2223 197 3 25 31 0 0 chr3 191361077 191361109 -36163469 + AT_rich Low_complexity Low_complexity 1 32 0 623 288 32 12 chr3 191361299 191361549 -36163029 - L1ME2 LINE L1 -8 6156 5902 956 303 26 15 chr3 191361551 191362218 -36162360 - L1MCa LINE L1 -3604 2822 2186 257 291 20 51 chr3 191362234 191362468 -36162110 - L1MCa LINE L1 -4621 1807 1539 11327 218 17 41 chr3 191362588 191365798 -36158780 + L1M2 LINE L1 2070 5189 -1659 1909 134 27 20 chr3 191365798 191366097 -36158481 + AluSx SINE Alu 5 305 -7 11327 218 17 41 chr3 191366097 191366627 -36157951 + L1M2 LINE L1 5189 5731 -1117 633 201 7 0 chr3 191366626 191366765 -36157813 + L1MA4A LINE L1 6164 6303 0 668 268 108 70 chr3 191366773 191367430 -36157148 + L1MC4 LINE L1 6703 7384 -658 346 299 52 15 chr3 191367756 191367890 -36156688 + L1ME LINE L1 557 695 -5375 13620 173 17 11 chr3 191368045 191371246 -36153332 + MER52-int LTR ERV1 452 3867 -417 268 292 56 22 chr3 191371390 191371568 -36153010 + L1ME LINE L1 804 987 -5083 2783 211 26 8 chr3 191371574 191372079 -36152499 + MLT2B3 LTR ERVL 2 519 -35 564 15 0 0 chr3 191372079 191372144 -36152434 + (TCTA)n Simple_repeat Simple_repeat 2 66 0 2783 211 26 8 chr3 191372144 191372173 -36152405 + MLT2B3 LTR ERVL 519 546 -8 3333 246 70 7 chr3 191372178 191373130 -36151448 + ERVL LTR ERVL 2 1029 -4660 3235 214 32 3 chr3 191373126 191373777 -36150801 + ERVL LTR ERVL 1189 1858 -3906 * 10927 172 30 8 chr3 191373794 191374300 -36150278 + ERVL LTR ERVL 2048 2541 -3223 182 62 31 0 chr3 191374300 191374332 -36150246 + (TTTG)n Simple_repeat Simple_repeat 2 34 0 10927 172 30 8 chr3 191374332 191375703 -36148875 + ERVL LTR ERVL 2541 3966 -1798 251 259 0 0 chr3 191375704 191375758 -36148820 + MLT2B3 LTR ERVL 499 552 -2 440 322 102 12 chr3 191375761 191376016 -36148562 + L1ME LINE L1 986 1263 -4817 22 0 0 0 chr3 191376477 191376499 -36148079 + AT_rich Low_complexity Low_complexity 1 22 0 1282 96 0 0 chr3 191376520 191376687 -36147891 - AluSq SINE Alu 0 313 147 30 45 0 0 chr3 191376945 191376989 -36147589 + GC_rich Low_complexity Low_complexity 1 44 0 236 274 0 24 chr3 191377255 191377339 -36147239 + CT-rich Low_complexity Low_complexity 1 82 0 243 61 0 0 chr3 191377384 191377417 -36147161 + (GA)n Simple_repeat Simple_repeat 2 34 0 505 263 60 63 chr3 191378051 191378466 -36146112 + HAL1 LINE L1 893 1306 -1201 745 215 13 0 chr3 191378485 191378634 -36145944 + MLT1E3 LTR MaLR 474 624 0 29 0 0 0 chr3 191378709 191378738 -36145840 + AT_rich Low_complexity Low_complexity 1 29 0 194 374 20 27 chr3 191378903 191379050 -36145528 + MIR SINE MIR 75 220 -42 370 349 26 16 chr3 191379871 191380060 -36144518 - MIR SINE MIR 0 262 72 181 339 77 0 chr3 191380106 191380171 -36144407 - L2 LINE L2 0 3272 3203 25 31 0 0 chr3 191380278 191380310 -36144268 + AT_rich Low_complexity Low_complexity 1 32 0 25 0 0 0 chr3 191380721 191380746 -36143832 + AT_rich Low_complexity Low_complexity 1 25 0 528 382 37 55 chr3 191380833 191381395 -36143183 - MER52A LTR ERV1 -2 1753 1078 275 143 226 0 chr3 191381380 191381464 -36143114 - MER52A LTR ERV1 -852 903 801 * 1835 197 51 31 chr3 191381543 191382086 -36142492 - MLT2A2 LTR ERVL 0 554 1 521 261 0 0 chr3 191382097 191382212 -36142366 - LTR28 LTR ERV1 -905 115 1 333 310 11 0 chr3 191382339 191382426 -36142152 + L1MC/D LINE L1 5513 5600 -2208 229 271 17 8 chr3 191382573 191382691 -36141887 + (TA)n Simple_repeat Simple_repeat 1 119 0 335 290 107 8 chr3 191382709 191382840 -36141738 + L1M4 LINE L1 2670 2813 -3333 21 0 0 0 chr3 191383084 191383105 -36141473 + AT_rich Low_complexity Low_complexity 1 21 0 489 262 8 0 chr3 191383106 191383251 -36141327 - L1ME1 LINE L1 -5 6161 6013 506 252 83 35 chr3 191383278 191383592 -36140986 - L1M4 LINE L1 -1645 4999 4671 229 244 0 0 chr3 191383592 191383637 -36140941 + CT-rich Low_complexity Low_complexity 3 47 0 253 248 106 50 chr3 191383642 191383783 -36140795 - L1M4 LINE L1 -1954 4690 4542 416 307 74 0 chr3 191383799 191384001 -36140577 - L1M4 LINE L1 -2166 4478 4262 2059 266 92 25 chr3 191384001 191384382 -36140196 - L1M4 LINE L1 -2743 3901 3547 1336 146 55 9 chr3 191384382 191384602 -36139976 - MER30 DNA MER1_type 0 230 1 2059 266 92 25 chr3 191384602 191385804 -36138774 - L1M4 LINE L1 -3097 3547 2270 393 309 121 9 chr3 191385931 191386288 -36138290 - L1M4 LINE L1 -4619 2025 1541 22 0 0 0 chr3 191386432 191386454 -36138124 + AT_rich Low_complexity Low_complexity 1 22 0 1172 221 77 11 chr3 191386454 191386894 -36137684 + L1M2 LINE L1 1645 2113 -4736 13069 182 41 10 chr3 191386997 191387765 -36136813 - L1 LINE L1 -3839 3726 2984 180 0 0 0 chr3 191387765 191387785 -36136793 + (TTG)n Simple_repeat Simple_repeat 2 21 0 13069 182 41 10 chr3 191387785 191388353 -36136225 - L1 LINE L1 -4581 2984 2436 2077 122 3 0 chr3 191388353 191388647 -36135931 - AluSg SINE Alu -15 295 1 13069 182 41 10 chr3 191388647 191389873 -36134705 - L1 LINE L1 -5129 2436 1080 242 321 0 0 chr3 191390128 191390209 -36134369 - MIR SINE MIR -31 231 151 421 338 26 0 chr3 191390748 191390902 -36133676 - MIR SINE MIR -103 159 2 218 352 56 24 chr3 191390902 191391025 -36133553 - MIR SINE MIR -107 155 29 1124 233 64 35 chr3 191391170 191391574 -36133004 + LTR52 LTR ERVL 3 418 -3 1279 254 49 35 chr3 191392073 191392583 -36131995 + L1ME2 LINE L1 5598 6119 -45 209 125 0 21 chr3 191392661 191392709 -36131869 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 24 77 0 0 chr3 191393630 191393682 -36130896 + AT_rich Low_complexity Low_complexity 1 52 0 233 282 108 62 chr3 191394187 191394258 -36130320 + MLT1J LTR MaLR 98 164 -347 1900 148 0 16 chr3 191394258 191394561 -36130017 - AluJo SINE Alu -14 298 1 233 282 108 62 chr3 191394561 191394684 -36129894 + MLT1J LTR MaLR 164 301 -210 244 294 137 56 chr3 191394968 191395274 -36129304 - HAL1b LINE L1 -854 494 164 2789 288 59 71 chr3 191395479 191397187 -36127391 - HAL1 LINE L1 -818 1689 3 24 67 0 0 chr3 191397208 191397253 -36127325 + AT_rich Low_complexity Low_complexity 1 45 0 21 36 0 0 chr3 191397445 191397473 -36127105 + AT_rich Low_complexity Low_complexity 1 28 0 2179 110 0 0 chr3 191397591 191397882 -36126696 + AluSx SINE Alu 1 291 -21 201 291 0 0 chr3 191397983 191398038 -36126540 + CT-rich Low_complexity Low_complexity 2 56 0 21 36 0 0 chr3 191398345 191398373 -36126205 + AT_rich Low_complexity Low_complexity 1 28 0 22 56 0 0 chr3 191399269 191399305 -36125273 + AT_rich Low_complexity Low_complexity 1 36 0 286 317 0 58 chr3 191399479 191399599 -36124979 - MIR SINE MIR 0 262 150 196 313 15 15 chr3 191399945 191400012 -36124566 + MIR SINE MIR 183 249 -13 2081 102 31 0 chr3 191400097 191400419 -36124159 - L1MA1 LINE L1 0 6302 5971 345 140 0 0 chr3 191400422 191400479 -36124099 + L1M1 LINE L1 5476 5532 -770 * 356 82 0 0 chr3 191400477 191400526 -36124052 - L1MA1 LINE L1 -833 5471 5423 904 221 80 80 chr3 191401155 191401706 -36122872 - Charlie2 DNA MER1_type -6 2856 2306 2004 114 56 67 chr3 191401810 191402024 -36122554 - THE1B LTR MaLR 0 364 153 2026 112 0 21 chr3 191402024 191402354 -36122224 + AluSx SINE Alu 3 326 0 2004 114 56 67 chr3 191402354 191402498 -36122080 - THE1B LTR MaLR -211 153 9 10955 113 6 3 chr3 191402508 191404082 -36120496 - THE1B-int LTR MaLR -2 1578 1 1815 147 69 20 chr3 191404082 191404429 -36120149 - THE1B LTR MaLR 0 364 1 584 261 136 73 chr3 191406245 191406841 -36117737 + LTR48B LTR ERV1 4 644 0 188 325 91 0 chr3 191408156 191408233 -36116345 - MIR SINE MIR -123 139 56 431 310 70 0 chr3 191408603 191408774 -36115804 + MIR SINE MIR 77 259 -3 21 0 0 0 chr3 191409082 191409103 -36115475 + AT_rich Low_complexity Low_complexity 1 21 0 2322 70 3 3 chr3 191409343 191409645 -36114933 + AluY SINE Alu 1 302 -9 487 320 47 0 chr3 191409706 191409856 -36114722 - L2 LINE L2 0 3272 3116 2206 87 30 0 chr3 191410038 191410336 -36114242 + AluSq SINE Alu 1 307 -6 255 246 53 0 chr3 191410888 191410945 -36113633 - L3 LINE CR1 -369 1208 1149 254 262 155 0 chr3 191411270 191411354 -36113224 + MIR3 SINE MIR 106 202 -6 190 224 24 0 chr3 191412168 191412253 -36112325 + (TA)n Simple_repeat Simple_repeat 2 88 0 198 143 0 0 chr3 191412280 191412315 -36112263 + (CATA)n Simple_repeat Simple_repeat 2 36 0 355 237 23 119 chr3 191412320 191412497 -36112081 - MIR SINE MIR -19 243 84 479 308 57 38 chr3 191412661 191412872 -36111706 + L2 LINE L2 3098 3312 -1 193 325 56 16 chr3 191413233 191413359 -36111219 - L2 LINE L2 -1044 2270 2140 1399 46 10 0 chr3 191413427 191413621 -36110957 - L1P LINE L1 -921 5225 5030 5877 56 9 3 chr3 191413621 191414365 -36110213 + L1PA5 LINE L1 5401 6152 -2 616 204 183 38 chr3 191414632 191414818 -36109760 + MER20 DNA MER1_type 1 213 -6 339 323 0 0 chr3 191414953 191415080 -36109498 + MER103 DNA DNA 37 163 -3 31 82 0 0 chr3 191415463 191415536 -36109042 + AT_rich Low_complexity Low_complexity 1 73 0 1460 191 70 0 chr3 191415698 191416013 -36108565 + MER2 DNA MER2_type 4 340 -5 252 0 0 0 chr3 191416013 191416041 -36108537 + (TA)n Simple_repeat Simple_repeat 2 29 0 21 57 0 0 chr3 191416222 191416257 -36108321 + AT_rich Low_complexity Low_complexity 1 35 0 198 295 42 53 chr3 191416399 191416494 -36108084 + L3b LINE CR1 1308 1401 -182 23 33 0 0 chr3 191416558 191416588 -36107990 + AT_rich Low_complexity Low_complexity 1 30 0 386 184 0 26 chr3 191417077 191417153 -36107425 - MLT1I LTR MaLR -12 397 324 232 300 71 0 chr3 191417158 191417228 -36107350 - MLT1I LTR MaLR -205 204 130 753 219 0 0 chr3 191418401 191418538 -36106040 + FRAM SINE Alu 27 163 -13 544 208 48 0 chr3 191418583 191418708 -36105870 - MLT1F1 LTR MaLR -2 565 435 1004 297 48 24 chr3 191418737 191419114 -36105464 - MLT1F1 LTR MaLR -87 480 95 491 318 76 33 chr3 191419231 191419442 -36105136 + L2 LINE L2 3093 3312 -1 5108 199 101 11 chr3 191420892 191422036 -36102542 - MER52A LTR ERV1 0 1755 510 1529 290 58 41 chr3 191422163 191422797 -36101781 - MLT2F LTR ERVL -2 661 17 241 389 27 13 chr3 191422831 191422980 -36101598 - L2 LINE L2 -339 2974 2824 376 267 33 33 chr3 191423126 191423246 -36101332 - MER5B DNA MER1_type 0 178 59 1884 183 80 109 chr3 191424048 191424752 -36099826 - LTR8A LTR ERV1 -44 683 1 1698 192 57 45 chr3 191424752 191425478 -36099100 + L1M4 LINE L1 4994 5716 -462 4590 219 29 13 chr3 191425598 191426647 -36097931 - L1M1 LINE L1 -6485 1080 16 26 30 0 0 chr3 191426933 191426966 -36097612 + AT_rich Low_complexity Low_complexity 1 33 0 476 322 132 24 chr3 191427174 191427782 -36096796 - L2 LINE L2 -91 3222 2550 280 226 22 51 chr3 191427807 191427944 -36096634 + (GGGTG)n Simple_repeat Simple_repeat 2 134 0 227 163 25 175 chr3 191528235 191528315 -35996263 + MER2 DNA MER2_type 278 345 0 1447 238 178 55 chr3 191528315 191529030 -35995548 + L1MC4 LINE L1 6691 7493 -549 331 259 23 46 chr3 191529101 191529232 -35995346 + L1MC4 LINE L1 7914 8041 -1 386 232 342 5 chr3 191529533 191529723 -35994855 + MIR SINE MIR 3 256 -6 315 71 0 0 chr3 191531017 191531059 -35993519 + (TA)n Simple_repeat Simple_repeat 2 43 0 1976 112 58 10 chr3 191532308 191532602 -35991976 + AluSg SINE Alu 3 310 0 25 0 0 0 chr3 191533465 191533490 -35991088 + AT_rich Low_complexity Low_complexity 1 25 0 578 247 6 33 chr3 191533557 191533739 -35990839 + MER5B DNA MER1_type 2 178 0 843 187 88 50 chr3 191533753 191533935 -35990643 + MER5A DNA MER1_type 1 189 0 984 234 67 15 chr3 191533955 191534224 -35990354 + MER58B DNA MER1_type 59 341 0 432 309 161 12 chr3 191537928 191538090 -35986488 - MIR SINE MIR -30 232 47 619 205 210 34 chr3 191538966 191539171 -35985407 + MIR SINE MIR 20 260 -2 1198 124 192 41 chr3 191539414 191539700 -35984878 - MER46B DNA MER2_type 0 236 1 2373 84 0 0 chr3 191539815 191540123 -35984455 + AluY SINE Alu 1 308 -3 1496 176 0 46 chr3 191540839 191541123 -35983455 + AluJo SINE Alu 1 271 -41 198 167 0 0 chr3 191544031 191544067 -35980511 + (CACCAT)n Simple_repeat Simple_repeat 1 36 0 1002 191 0 0 chr3 191545565 191545738 -35978840 + FRAM SINE Alu 1 170 -6 2113 242 34 6 chr3 191546095 191546624 -35977954 - MER119 DNA MER1_type -32 551 8 8131 149 56 8 chr3 191546953 191548408 -35976170 + Tigger2 DNA MER2_type 2 1525 -1193 201 218 0 23 chr3 191548412 191548545 -35976033 + (TA)n Simple_repeat Simple_repeat 1 130 0 627 188 31 16 chr3 191548545 191548673 -35975905 - FLAM_C SINE Alu -13 130 1 5800 143 134 14 chr3 191548695 191549773 -35974805 + Tigger2 DNA MER2_type 1512 2718 0 21 0 0 0 chr3 191550209 191550230 -35974348 + AT_rich Low_complexity Low_complexity 1 21 0 1812 186 87 45 chr3 191550932 191551379 -35973199 - MLT1C LTR MaLR -1 466 1 250 268 123 24 chr3 191551697 191551862 -35972716 - MIR SINE MIR -55 207 32 198 191 0 0 chr3 191552035 191552082 -35972496 + CT-rich Low_complexity Low_complexity 2 48 0 294 316 168 7 chr3 191552767 191552922 -35971656 - MIR SINE MIR -51 211 32 592 293 58 5 chr3 191553051 191553239 -35971339 + MIR SINE MIR 30 227 -35 490 313 50 17 chr3 191553269 191553448 -35971130 + MIR SINE MIR 72 256 -6 2226 93 14 0 chr3 191553864 191554155 -35970423 - AluSx SINE Alu -17 295 1 1549 212 30 3 chr3 191554453 191554755 -35969823 + AluJo SINE Alu 3 312 0 209 296 57 34 chr3 191554870 191554958 -35969620 + L2 LINE L2 3211 3300 -13 194 389 95 40 chr3 191555254 191555380 -35969198 - L2 LINE L2 -38 3234 3102 298 252 8 94 chr3 191557249 191557376 -35967202 - MER117 DNA MER1_type -18 179 64 255 31 0 0 chr3 191557520 191557552 -35967026 + (GA)n Simple_repeat Simple_repeat 2 33 0 2064 106 4 0 chr3 191557557 191557830 -35966748 - AluSx SINE Alu -38 274 1 287 233 14 14 chr3 191557989 191558062 -35966516 - MIR3 SINE MIR -11 197 125 2237 136 28 0 chr3 191558096 191558450 -35966128 + THE1B LTR MaLR 1 364 0 566 245 159 0 chr3 191558494 191558518 -35966060 + MIR SINE MIR 74 93 -169 1983 149 0 9 chr3 191558518 191558833 -35965745 - AluSx SINE Alu 0 312 1 566 245 159 0 chr3 191558833 191558971 -35965607 + MIR SINE MIR 93 262 0 22 0 0 0 chr3 191561082 191561104 -35963474 + AT_rich Low_complexity Low_complexity 1 22 0 778 250 104 14 chr3 191562461 191562673 -35961905 + MIR SINE MIR 27 257 -5 318 179 11 95 chr3 191564728 191564823 -35959755 - MLT1J2 LTR MaLR -314 136 50 196 297 137 69 chr3 191565200 191565375 -35959203 - MIR SINE MIR -50 212 26 651 159 166 6 chr3 191566780 191566937 -35957641 - MER3 DNA MER1_type -27 182 1 292 327 72 33 chr3 191567362 191567515 -35957063 + L2 LINE L2 2920 3078 -194 1949 144 3 3 chr3 191567936 191568220 -35956358 + AluSx SINE Alu 3 286 -26 235 0 0 54 chr3 191568224 191568261 -35956317 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 522 245 111 56 chr3 191568566 191568928 -35955650 + L1ME LINE L1 5443 5827 -330 1276 137 64 134 chr3 191570530 191570903 -35953675 - MER7A DNA MER2_type -1 345 1 2191 70 11 18 chr3 191571604 191571923 -35952655 + AluY SINE Alu 1 317 0 348 253 220 44 chr3 191573056 191573238 -35951340 - MIR SINE MIR 0 262 49 20250 149 51 23 chr3 191573373 191577208 -35947370 + L1M1 LINE L1 15 3952 -3613 282 175 70 18 chr3 191577327 191577384 -35947194 + L2 LINE L2 3251 3310 -3 439 310 9 0 chr3 191578258 191578371 -35946207 + MIR3 SINE MIR 72 185 -23 2848 3 0 0 chr3 191578508 191578813 -35945765 - AluYa5 SINE Alu -6 305 1 446 359 82 35 chr3 191579039 191579561 -35945017 - L2 LINE L2 -18 3254 2716 507 263 63 46 chr3 191579595 191579770 -35944808 + MER5B DNA MER1_type 1 178 0 200 231 15 46 chr3 191579773 191579838 -35944740 - L2 LINE L2 -665 2649 2587 434 278 49 6 chr3 191579929 191580091 -35944487 + L1MC4a LINE L1 6100 6268 -1540 842 294 203 2 chr3 191580174 191580569 -35944009 + L1MC4a LINE L1 6425 6898 -910 6640 112 14 40 chr3 191580604 191581909 -35942669 - L1MA1 LINE L1 -4 6298 5027 807 164 11 11 chr3 191581909 191582086 -35942492 + GA-rich Low_complexity Low_complexity 1 177 0 1961 231 115 14 chr3 191582097 191582756 -35941822 + L1MC4 LINE L1 7149 7874 -168 2092 162 82 63 chr3 191583047 191583664 -35940914 - MER49 LTR ERV1 -14 909 179 323 228 101 67 chr3 191583758 191583907 -35940671 + MLT1L LTR MaLR 196 349 -266 22 0 0 0 chr3 191583989 191584011 -35940567 + AT_rich Low_complexity Low_complexity 1 22 0 2380 98 0 13 chr3 191585077 191585392 -35939186 + AluSx SINE Alu 1 311 -1 484 188 21 0 chr3 191585414 191585510 -35939068 + MIR SINE MIR 94 191 -71 975 111 15 0 chr3 191585510 191585645 -35938933 + AluSq/x SINE Alu 1 137 -175 267 233 67 0 chr3 191586752 191586812 -35937766 - L2 LINE L2 -2 3311 3248 1385 194 108 57 chr3 191586926 191587522 -35937056 + LTR48 LTR ERV1 1 627 -26 1119 138 114 19 chr3 191587603 191587813 -35936765 - MER30 DNA MER1_type 0 230 1 1719 220 62 79 chr3 191588093 191588612 -35935966 + MLT2B1 LTR ERVL 1 510 -10 205 297 66 44 chr3 191588743 191588834 -35935744 - MIR SINE MIR -97 165 73 1739 198 35 35 chr3 191589305 191589673 -35934905 + MLT1A2 LTR MaLR 1 368 -6 249 316 60 24 chr3 191591032 191591200 -35933378 + HAL1b LINE L1 65 238 -1110 1934 160 16 0 chr3 191591208 191591514 -35933064 + AluJb SINE Alu 1 311 -1 284 172 0 16 chr3 191591514 191591578 -35933000 + GA-rich Low_complexity Low_complexity 2 64 0 726 338 68 9 chr3 191591677 191592219 -35932359 + HAL1b LINE L1 280 853 -495 21 0 0 0 chr3 191592446 191592467 -35932111 + AT_rich Low_complexity Low_complexity 1 21 0 351 273 65 0 chr3 191592759 191592913 -35931665 - MER82 DNA MER2_type -68 585 422 27 0 0 0 chr3 191592920 191592947 -35931631 + AT_rich Low_complexity Low_complexity 1 27 0 1399 104 5 18 chr3 191592962 191593183 -35931395 - L1PA6 LINE L1 0 6154 5937 2010 196 55 2 chr3 191593190 191593588 -35930990 - MER82 DNA MER2_type -234 419 1 14402 137 16 23 chr3 191593730 191594992 -35929586 - Tigger1 DNA MER2_type 0 2418 1177 1660 167 25 4 chr3 191594992 191595268 -35929310 - AluJo SINE Alu -30 282 1 14402 137 16 23 chr3 191595268 191596438 -35928140 - Tigger1 DNA MER2_type -1241 1177 1 1162 186 42 17 chr3 191596438 191596696 -35927882 - MLT1D LTR MaLR -2 503 206 1066 304 134 36 chr3 191597353 191598314 -35926264 + L1MC4a LINE L1 2485 3539 -2607 1389 269 104 4 chr3 191598393 191598895 -35925683 + L1MC4a LINE L1 5347 5898 -1910 2696 214 76 21 chr3 191598901 191599661 -35924917 + L1MB7 LINE L1 5366 6167 -17 235 191 0 0 chr3 191599680 191599722 -35924856 + L1MB7 LINE L1 6133 6174 -10 489 264 27 0 chr3 191599741 191599851 -35924727 - MER81 DNA DNA 0 114 2 766 264 152 47 chr3 191599855 191600472 -35924106 + L1MC4a LINE L1 5907 6588 -1220 1067 151 23 73 chr3 191600548 191600767 -35923811 + MER2 DNA MER2_type 2 209 -136 931 174 130 15 chr3 191601143 191601413 -35923165 - MER33 DNA MER1_type -30 294 1 1791 185 0 0 chr3 191601587 191601884 -35922694 - AluJo SINE Alu -15 297 1 22 0 0 0 chr3 191602256 191602278 -35922300 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr3 191602437 191602463 -35922115 + AT_rich Low_complexity Low_complexity 1 26 0 10353 157 62 7 chr3 191602663 191605887 -35918691 + L1MA3 LINE L1 2890 6305 0 25 65 0 0 chr3 191605887 191605933 -35918645 + AT_rich Low_complexity Low_complexity 1 46 0 710 253 59 103 chr3 191607868 191608275 -35916303 + MLT1J LTR MaLR 109 497 -14 23 0 0 0 chr3 191608584 191608607 -35915971 + AT_rich Low_complexity Low_complexity 1 23 0 246 321 197 0 chr3 191608620 191608757 -35915821 + MIR3 SINE MIR 30 193 -15 570 289 70 75 chr3 191608927 191609314 -35915264 + L2 LINE L2 2928 3312 -1 26 30 0 0 chr3 191609944 191609977 -35914601 + AT_rich Low_complexity Low_complexity 1 33 0 377 274 103 0 chr3 191610578 191610695 -35913883 - MIR SINE MIR -115 147 19 268 296 46 9 chr3 191610968 191611076 -35913502 - L3 LINE CR1 -128 1449 1338 246 326 124 8 chr3 191611578 191611707 -35912871 - L2 LINE L2 -2 3311 3168 247 276 69 43 chr3 191612809 191612925 -35911653 - MIR3 SINE MIR -17 191 73 214 204 143 0 chr3 191613876 191613925 -35910653 + L2 LINE L2 3217 3272 0 2357 115 0 0 chr3 191614300 191614612 -35909966 + AluSx SINE Alu 1 312 0 441 0 0 0 chr3 191615089 191615138 -35909440 + (TA)n Simple_repeat Simple_repeat 2 50 0 1039 147 136 18 chr3 191615353 191615625 -35908953 - AluSq SINE Alu -9 304 1 210 241 38 38 chr3 191615841 191615920 -35908658 + MIR SINE MIR 182 260 -2 458 197 0 3 chr3 191615965 191616094 -35908484 + MER96 DNA MER1_type? 11 175 0 900 251 35 35 chr3 191618666 191618921 -35905657 + MIR SINE MIR 7 261 -1 207 209 0 0 chr3 191620198 191620241 -35904337 + A-rich Low_complexity Low_complexity 1 43 0 636 289 96 38 chr3 191620826 191621276 -35903302 - L2 LINE L2 -1 3312 2837 224 190 192 46 chr3 191623300 191623408 -35901170 + MIR SINE MIR 21 147 -61 342 285 83 122 chr3 191624400 191624867 -35899711 - L1M2 LINE L1 -5751 1098 650 524 113 35 14 chr3 191628404 191628545 -35896033 + (TA)n Simple_repeat Simple_repeat 2 145 0 304 269 21 32 chr3 191628545 191628638 -35895940 - L1MC4 LINE L1 -1338 6704 6613 * 319 233 0 14 chr3 191628576 191628649 -35895929 + L1MCa LINE L1 1996 2067 -4359 42 57 0 0 chr3 191628649 191628719 -35895859 + AT_rich Low_complexity Low_complexity 1 70 0 450 335 103 13 chr3 191628958 191629182 -35895396 - MIR SINE MIR -2 260 17 842 217 82 0 chr3 191629182 191629389 -35895189 - MER58A DNA MER1_type 0 224 1 369 0 0 0 chr3 191630423 191630464 -35894114 + (CA)n Simple_repeat Simple_repeat 2 42 0 22 35 0 0 chr3 191631100 191631129 -35893449 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr3 191631180 191631219 -35893359 + AT_rich Low_complexity Low_complexity 1 39 0 189 213 0 0 chr3 191632531 191632578 -35892000 + (CACG)n Simple_repeat Simple_repeat 4 50 0 1750 177 9 22 chr3 191632952 191633268 -35891310 + AluJo SINE Alu 1 312 0 210 91 0 0 chr3 191634153 191634186 -35890392 + (A)n Simple_repeat Simple_repeat 1 33 0 224 239 0 0 chr3 191635050 191635096 -35889482 - L2 LINE L2 0 3313 3268 3152 246 110 45 chr3 191635152 191637079 -35887499 - L1MC4 LINE L1 -98 7710 5734 738 310 64 30 chr3 191637143 191637399 -35887179 - L2 LINE L2 -936 2378 2101 218 31 0 31 chr3 191637399 191637431 -35887147 + (CTTAT)n Simple_repeat Simple_repeat 3 33 0 738 310 64 30 chr3 191637431 191637580 -35886998 - L2 LINE L2 -1213 2101 1959 277 319 139 36 chr3 191638256 191638557 -35886021 - L2 LINE L2 -1367 1947 1616 211 280 0 0 chr3 191638695 191638745 -35885833 + CT-rich Low_complexity Low_complexity 4 53 0 198 369 115 38 chr3 191638770 191639117 -35885461 - L2 LINE L2 -1972 1342 969 519 328 23 17 chr3 191639371 191639548 -35885030 + MIR3 SINE MIR 31 208 0 21 0 0 0 chr3 191640365 191640386 -35884192 + AT_rich Low_complexity Low_complexity 1 21 0 6045 159 15 6 chr3 191640855 191642451 -35882127 + L1PB1 LINE L1 4176 5796 -355 273 119 0 0 chr3 191642451 191642493 -35882085 + (TA)n Simple_repeat Simple_repeat 1 42 0 6045 159 15 6 chr3 191642493 191642853 -35881725 + L1PB1 LINE L1 5796 6151 0 296 302 0 0 chr3 191642874 191642937 -35881641 + L2 LINE L2 3251 3313 0 609 317 43 29 chr3 191643463 191643908 -35880670 + L1ME4a LINE L1 5476 5926 -195 182 324 29 0 chr3 191644998 191645066 -35879512 - MIR SINE MIR -148 114 45 288 0 0 0 chr3 191645698 191645730 -35878848 + (CA)n Simple_repeat Simple_repeat 2 33 0 264 271 50 86 chr3 191645822 191645962 -35878616 - MIR SINE MIR -11 251 117 216 322 82 20 chr3 191646959 191647105 -35877473 - MIR SINE MIR -59 203 49 1193 222 18 0 chr3 191647258 191647483 -35877095 - MER82 DNA MER2_type 0 653 425 528 114 38 0 chr3 191647613 191647745 -35876833 + (TA)n Simple_repeat Simple_repeat 2 138 0 482 273 25 0 chr3 191647864 191648025 -35876553 + L1MB7 LINE L1 3296 3460 -2686 * 3796 198 66 38 chr3 191648021 191650227 -35874351 + L1MB7 LINE L1 3718 6110 -74 2339 67 0 0 chr3 191650227 191650530 -35874048 + AluY SINE Alu 1 303 0 3796 198 66 38 chr3 191650530 191650604 -35873974 + L1MB7 LINE L1 6110 6181 -3 21 36 0 0 chr3 191650607 191650635 -35873943 + AT_rich Low_complexity Low_complexity 1 28 0 361 280 89 34 chr3 191651063 191651299 -35873279 + L1M4 LINE L1 2191 2439 -3707 369 0 0 0 chr3 191651617 191651658 -35872920 + (TG)n Simple_repeat Simple_repeat 2 42 0 456 269 36 72 chr3 191653465 191653632 -35870946 - MIR SINE MIR -26 236 76 23 33 0 0 chr3 191653827 191653857 -35870721 + AT_rich Low_complexity Low_complexity 1 30 0 227 281 0 0 chr3 191654104 191654161 -35870417 + Charlie8 DNA MER1_type 2352 2408 -9 407 132 13 26 chr3 191654761 191654837 -35869741 + MER116 DNA Mariner 6 80 0 844 279 212 40 chr3 191654973 191655967 -35868611 + L2 LINE L2 2093 3266 -47 537 229 8 53 chr3 191656113 191656244 -35868334 + L2 LINE L2 3188 3312 -1 189 0 0 0 chr3 191658659 191658680 -35865898 + (T)n Simple_repeat Simple_repeat 1 21 0 1928 168 90 55 chr3 191658686 191659173 -35865405 - LTR22 LTR ERVK -5 504 1 1651 169 0 43 chr3 191659173 191659474 -35865104 - AluJb SINE Alu -24 288 1 296 269 26 0 chr3 191659978 191660056 -35864522 - MIR3 SINE MIR -1 207 128 196 296 88 56 chr3 191660091 191660216 -35864362 + L2 LINE L2 3185 3313 0 198 0 0 0 chr3 191660375 191660397 -35864181 + (CA)n Simple_repeat Simple_repeat 1 22 0 2119 141 0 0 chr3 191660501 191660799 -35863779 + AluSx SINE Alu 1 298 -14 1402 192 34 12 chr3 191661173 191661496 -35863082 + L1MC4a LINE L1 6890 7219 -589 1180 206 48 37 chr3 191661498 191661791 -35862787 + L1MC4a LINE L1 6194 7808 0 193 261 65 33 chr3 191661840 191661932 -35862646 - MIR SINE MIR -86 176 82 2710 169 43 18 chr3 191662067 191662265 -35862313 + L1PA16 LINE L1 5583 5775 -391 189 0 0 0 chr3 191662265 191662286 -35862292 + (TA)n Simple_repeat Simple_repeat 2 22 0 2710 169 43 18 chr3 191662286 191662643 -35861935 + L1PA16 LINE L1 5775 6152 -14 217 301 122 41 chr3 191662653 191662776 -35861802 - MIR3 SINE MIR -75 133 1 186 133 0 0 chr3 191662824 191662854 -35861724 + (TATG)n Simple_repeat Simple_repeat 1 30 0 317 197 0 0 chr3 191662884 191662945 -35861633 - L1MC4a LINE L1 -589 7219 7159 252 333 0 0 chr3 191662998 191663067 -35861511 - L2 LINE L2 -250 3022 2954 180 0 0 0 chr3 191663213 191663233 -35861345 + (TA)n Simple_repeat Simple_repeat 2 21 0 441 0 0 0 chr3 191663426 191663475 -35861103 + (TG)n Simple_repeat Simple_repeat 2 50 0 1264 267 108 26 chr3 191664900 191665390 -35859188 + L2 LINE L2 1345 1874 -1440 630 286 75 45 chr3 191665379 191665687 -35858891 + L2 LINE L2 2849 3165 -148 * 399 279 85 0 chr3 191665825 191665954 -35858624 + MIR SINE MIR 28 167 -95 336 312 116 7 chr3 191665950 191666088 -35858490 - L2 LINE L2 -2 3270 3118 * 330 26 0 0 chr3 191666222 191666261 -35858317 + (TG)n Simple_repeat Simple_repeat 2 40 0 1155 189 0 15 chr3 191666261 191666462 -35858116 - AluJb SINE Alu -29 283 86 342 360 23 11 chr3 191666516 191666691 -35857887 - MER5A DNA MER1_type -6 183 7 2101 112 75 29 chr3 191667106 191667454 -35857124 - THE1B LTR MaLR 0 364 1 11802 97 2 0 chr3 191667454 191669030 -35855548 - THE1B-int LTR MaLR 0 1580 1 2079 129 21 61 chr3 191669030 191669409 -35855169 - THE1B LTR MaLR 0 364 1 11907 123 14 27 chr3 191669409 191671349 -35853229 + Tigger1 DNA MER2_type 504 2418 0 298 51 0 0 chr3 191671835 191671874 -35852704 + (TTTG)n Simple_repeat Simple_repeat 2 72 0 2205 104 0 0 chr3 191671874 191672154 -35852424 - AluSc SINE Alu -29 280 1 585 215 53 14 chr3 191672571 191672780 -35851798 - L1MC/D LINE L1 -2337 5471 5255 205 257 18 0 chr3 191672952 191673061 -35851517 + (TA)n Simple_repeat Simple_repeat 2 112 0 375 286 129 0 chr3 191673306 191673561 -35851017 - L1MC/D LINE L1 -1372 4774 4487 432 221 54 72 chr3 191673591 191673813 -35850765 - L1MC5 LINE L1 -379 7582 7365 755 293 83 48 chr3 191673944 191674319 -35850259 + L1MC4 LINE L1 5550 5937 -1871 267 79 0 0 chr3 191674672 191674710 -35849868 + (TG)n Simple_repeat Simple_repeat 1 38 0 201 242 45 61 chr3 191674757 191674823 -35849755 + L3 LINE CR1 1491 1555 -22 379 295 53 32 chr3 191674828 191675018 -35849560 + MIR SINE MIR 2 195 -67 360 324 20 0 chr3 191675584 191675686 -35848892 + FLAM_A SINE Alu 3 106 -27 378 0 0 0 chr3 191675686 191675728 -35848850 + (TC)n Simple_repeat Simple_repeat 2 43 0 325 311 0 0 chr3 191675740 191675830 -35848748 - L1MC4 LINE L1 -1339 6703 6614 307 330 19 0 chr3 191675768 191675871 -35848707 + L1MC4 LINE L1 6614 6718 -1324 * 230 290 60 30 chr3 191676133 191676233 -35848345 + L3b LINE CR1 1368 1470 -113 380 208 13 0 chr3 191677075 191677152 -35847426 + MER116 DNA Mariner 3 80 0 2236 134 0 15 chr3 191677368 191677710 -35846868 + MER1B DNA MER1_type 1 337 0 1342 94 17 0 chr3 191678088 191678321 -35846257 - AluSg/x SINE Alu 0 336 101 396 278 19 9 chr3 191678571 191678679 -35845899 + L2 LINE L2 3205 3313 0 413 81 0 0 chr3 191678779 191678841 -35845737 + Alu SINE Alu 241 302 -10 713 253 95 5 chr3 191679529 191679719 -35844859 - MER3 DNA MER1_type 0 209 3 2006 161 64 44 chr3 191679719 191680173 -35844405 + MER31B LTR ERV1 1 463 -3 24 0 0 0 chr3 191680528 191680552 -35844026 + AT_rich Low_complexity Low_complexity 1 24 0 1735 158 98 53 chr3 191680632 191681011 -35843567 + MSTD LTR MaLR 1 396 0 1458 181 96 136 chr3 191681094 191681851 -35842727 - LTR8A LTR ERV1 0 727 1 1204 245 30 22 chr3 191682083 191682487 -35842091 - LTR37A LTR ERV1 -2 424 18 1008 301 76 41 chr3 191683034 191683663 -35840915 - HsTC2 DNA Tc2 -1010 888 238 225 0 0 0 chr3 191684497 191684522 -35840056 + (T)n Simple_repeat Simple_repeat 1 25 0 24 0 0 0 chr3 191684606 191684630 -35839948 + AT_rich Low_complexity Low_complexity 1 24 0 184 237 0 0 chr3 191685363 191685401 -35839177 - L2 LINE L2 -4 3268 3231 305 345 28 63 chr3 191686207 191686494 -35838084 - L2 LINE L2 -927 2387 2111 1984 124 29 40 chr3 191687320 191687698 -35836880 - THE1C LTR MaLR 0 375 2 2315 80 0 10 chr3 191687825 191688114 -35836464 + AluSc SINE Alu 3 288 -21 322 367 35 0 chr3 191688115 191688289 -35836289 - MIR SINE MIR -51 211 31 584 253 103 6 chr3 191688330 191688504 -35836074 + MIR SINE MIR 7 197 -65 2508 153 20 94 chr3 191688778 191689083 -35835495 - Tigger3(Golem) DNA MER2_type -10 3019 2778 2488 49 0 16 chr3 191689083 191689390 -35835188 + AluSx SINE Alu 1 302 -10 2508 153 20 94 chr3 191689390 191689680 -35834898 - Tigger3(Golem) DNA MER2_type -251 2778 2468 548 155 39 0 chr3 191689689 191689792 -35834786 + Tigger3(Golem) DNA MER2_type 2616 2722 -307 2992 96 86 14 chr3 191689800 191690290 -35834288 - Tigger3b DNA MER2_type -551 680 156 187 349 15 0 chr3 191691781 191691847 -35832731 + L2 LINE L2 3154 3220 -52 1838 168 7 3 chr3 191694715 191695018 -35829560 + AluSx SINE Alu 3 306 -6 180 191 255 0 chr3 191695033 191695080 -35829498 - MIR SINE MIR -10 252 194 263 250 0 12 chr3 191695220 191695300 -35829278 + L1MC4 LINE L1 6614 6692 -1350 1642 174 39 18 chr3 191696327 191696447 -35828131 + AluJo SINE Alu 1 117 -195 198 0 0 0 chr3 191696447 191696469 -35828109 + (TA)n Simple_repeat Simple_repeat 2 23 0 1642 174 39 18 chr3 191696469 191696629 -35827949 + AluJo SINE Alu 117 287 -25 312 27 0 0 chr3 191696706 191696743 -35827835 + (TG)n Simple_repeat Simple_repeat 2 38 0 832 121 29 0 chr3 191697298 191697438 -35827140 - L1PB1 LINE L1 -3 6148 6005 270 143 0 0 chr3 191697808 191697857 -35826721 + (TTCTCC)n Simple_repeat Simple_repeat 5 53 0 180 399 33 37 chr3 191698254 191698525 -35826053 + L2 LINE L2 2821 3090 -182 255 204 23 34 chr3 191699099 191699187 -35825391 + (TTATA)n Simple_repeat Simple_repeat 5 91 0 6237 77 37 0 chr3 191699226 191700439 -35824139 - L1PA10 LINE L1 -4 6164 4931 1642 142 16 0 chr3 191701612 191701865 -35822713 + L1PA16 LINE L1 5895 6151 -15 6965 47 13 3 chr3 191701929 191702797 -35821781 - L1PA7 LINE L1 -14 6140 5265 23 0 0 0 chr3 191702803 191702826 -35821752 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr3 191703666 191703692 -35820886 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2054 112 0 37 chr3 191703694 191703990 -35820588 - AluSx SINE Alu -27 285 1 24 0 0 0 chr3 191704293 191704317 -35820261 + AT_rich Low_complexity Low_complexity 1 24 0 582 263 19 93 chr3 191704332 191704591 -35819987 + MIR SINE MIR 11 250 -12 23 33 0 0 chr3 191704601 191704631 -35819947 + AT_rich Low_complexity Low_complexity 1 30 0 7816 12 1 0 chr3 191704811 191706187 -35818391 + L1PA3 LINE L1 4804 6180 0 411 259 119 0 chr3 191706362 191706505 -35818073 - MIR SINE MIR -18 244 85 594 277 48 29 chr3 191706653 191706859 -35817719 + MIR SINE MIR 43 252 -10 1473 200 0 35 chr3 191707426 191707716 -35816862 + AluJo SINE Alu 4 283 -29 25 95 0 0 chr3 191707877 191707951 -35816627 + AT_rich Low_complexity Low_complexity 1 74 0 4358 72 22 1 chr3 191708013 191708801 -35815777 - L1P3 LINE L1 -611 5561 4762 4259 79 0 7 chr3 191708801 191709371 -35815207 + L1PA8 LINE L1 5598 6164 -8 25 0 0 0 chr3 191709726 191709751 -35814827 + AT_rich Low_complexity Low_complexity 1 25 0 204 299 139 36 chr3 191710399 191710536 -35814042 + L2 LINE L2 3116 3266 -6 21 0 0 0 chr3 191710681 191710702 -35813876 + AT_rich Low_complexity Low_complexity 1 21 0 2170 117 0 3 chr3 191710707 191710997 -35813581 + AluSq SINE Alu 1 289 -24 252 0 0 0 chr3 191711007 191711035 -35813543 + (TAAA)n Simple_repeat Simple_repeat 3 30 0 255 364 13 0 chr3 191712566 191712643 -35811935 + L2 LINE L2 3186 3263 -9 5462 143 27 1 chr3 191713232 191714108 -35810470 - Tigger1 DNA MER2_type -1 2417 1519 534 171 9 9 chr3 191714123 191714228 -35810350 + MER20 DNA MER1_type 114 218 -1 207 176 0 0 chr3 191714331 191714365 -35810213 + A-rich Low_complexity Low_complexity 4 37 0 23 78 0 0 chr3 191714547 191714598 -35809980 + AT_rich Low_complexity Low_complexity 1 51 0 594 194 83 0 chr3 191714607 191714715 -35809863 + FLAM_C SINE Alu 1 117 -26 215 330 46 56 chr3 191714967 191715164 -35809414 + L2 LINE L2 2565 2759 -555 236 284 71 59 chr3 191716088 191716257 -35808321 + L2 LINE L2 2599 2769 -545 197 410 33 0 chr3 191716357 191716479 -35808099 + L2 LINE L2 2934 3059 -213 534 327 92 33 chr3 191716737 191717159 -35807419 + L2 LINE L2 2842 3288 -25 240 86 0 0 chr3 191717163 191717198 -35807380 + (TGAA)n Simple_repeat Simple_repeat 4 38 0 216 355 0 0 chr3 191717534 191717596 -35806982 + L2 LINE L2 3252 3313 0 302 338 52 22 chr3 191717918 191718054 -35806524 - L2 LINE L2 0 3272 3133 2244 126 0 0 chr3 191718252 191718562 -35806016 - AluSx SINE Alu -2 310 1 1582 130 48 55 chr3 191718925 191719218 -35805360 - AluJb SINE Alu -21 291 1 181 314 71 0 chr3 191719471 191719541 -35805037 + L3 LINE CR1 959 1033 -544 225 352 67 0 chr3 191719924 191720029 -35804549 - L2 LINE L2 -553 2761 2650 235 331 34 48 chr3 191720099 191720452 -35804126 - L1 LINE L1 -2373 3773 3426 207 0 0 0 chr3 191720455 191720478 -35804100 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2349 59 0 7 chr3 191720481 191720771 -35803807 - AluY SINE Alu -23 288 1 2141 101 0 7 chr3 191720886 191721200 -35803378 - AluSq SINE Alu 0 312 1 38 51 0 0 chr3 191721991 191722050 -35802528 + AT_rich Low_complexity Low_complexity 1 59 0 776 209 0 0 chr3 191722052 191722186 -35802392 - AluJo SINE Alu -178 134 1 1121 140 22 0 chr3 191722881 191723059 -35801519 - MLT1B LTR MaLR -5 385 204 5032 157 64 24 chr3 191723077 191724624 -35799954 + MER52A LTR ERV1 1 1755 0 1353 177 132 27 chr3 191724685 191725019 -35799559 - MLT2D LTR ERVL -45 369 1 1091 182 66 0 chr3 191725019 191725215 -35799363 - MLT1B LTR MaLR -181 209 1 21 0 0 0 chr3 191726229 191726250 -35798328 + AT_rich Low_complexity Low_complexity 1 21 0 1592 150 27 7 chr3 191726332 191726625 -35797953 - L1MA3 LINE L1 0 6305 6007 199 89 0 44 chr3 191727118 191727163 -35797415 + (TTTTG)n Simple_repeat Simple_repeat 2 44 0 1405 208 3 29 chr3 191727634 191727946 -35796632 + AluJo SINE Alu 6 309 -3 426 108 0 0 chr3 191727957 191728022 -35796556 + (GGAA)n Simple_repeat Simple_repeat 3 67 0 195 333 118 10 chr3 191729506 191729608 -35794970 + MER5A DNA MER1_type 76 188 -1 439 280 140 38 chr3 191729703 191729860 -35794718 - MER5A DNA MER1_type 0 189 17 2152 101 0 23 chr3 191730448 191730756 -35793822 - AluSq SINE Alu -10 303 3 267 31 0 0 chr3 191732219 191732251 -35792327 + (TG)n Simple_repeat Simple_repeat 1 32 0 219 362 11 0 chr3 191732581 191732675 -35791903 - MIR SINE MIR -111 151 57 1728 176 20 3 chr3 191732853 191733159 -35791419 + AluJb SINE Alu 1 311 -1 2465 213 63 97 chr3 191733549 191735037 -35789541 - L1ME1 LINE L1 -18 6542 5106 621 213 18 12 chr3 191735035 191735199 -35789379 - L1ME1 LINE L1 -3501 3039 2875 * 2237 274 53 9 chr3 191735216 191736147 -35788431 - L1ME1 LINE L1 -3893 2647 1676 250 290 215 9 chr3 191736356 191736463 -35788115 - MER5A DNA MER1_type -1 188 60 1291 169 6 110 chr3 191737928 191738265 -35786313 - AluJo SINE Alu 0 302 1 22 0 0 0 chr3 191738276 191738298 -35786280 + AT_rich Low_complexity Low_complexity 1 22 0 353 303 127 10 chr3 191738635 191738820 -35785758 + MIR SINE MIR 2 207 -55 1449 249 115 53 chr3 191738872 191739570 -35785008 + HsTC2a DNA Tc2 1 741 -3 27 0 0 0 chr3 191739922 191739949 -35784629 + AT_rich Low_complexity Low_complexity 1 27 0 2353 93 0 3 chr3 191741040 191741350 -35783228 - AluSx SINE Alu -3 309 1 206 322 158 35 chr3 191741802 191742004 -35782574 - L2 LINE L2 -17 3255 3029 28 48 0 0 chr3 191743088 191743130 -35781448 + AT_rich Low_complexity Low_complexity 1 42 0 781 273 119 34 chr3 191743201 191743589 -35780989 + MLT1J2 LTR MaLR 23 443 -7 1816 173 17 3 chr3 191743745 191744046 -35780532 - AluJo SINE Alu -5 307 3 242 316 120 0 chr3 191744476 191744593 -35779985 - L2 LINE L2 0 3313 3183 240 237 26 26 chr3 191744680 191744756 -35779822 + L1ME2 LINE L1 6086 6161 -3 626 221 8 31 chr3 191744810 191744937 -35779641 + FLAM_A SINE Alu 1 124 -9 516 158 83 67 chr3 191745600 191745720 -35778858 + THE1C LTR MaLR 1 122 -253 * 1577 158 34 31 chr3 191745707 191746029 -35778549 + THE1C LTR MaLR 53 375 0 282 282 26 0 chr3 191746439 191746517 -35778061 - MIR3 SINE MIR -37 171 92 386 295 155 0 chr3 191746524 191746653 -35777925 - MIR SINE MIR -112 150 2 307 89 0 0 chr3 191746734 191746779 -35777799 + MADE1 DNA Mariner 34 78 -2 218 261 174 0 chr3 191747554 191747623 -35776955 - L2 LINE L2 -4 3268 3188 257 291 43 21 chr3 191748069 191748210 -35776368 + L1ME LINE L1 5741 5884 -280 264 133 89 0 chr3 191748257 191748302 -35776276 - MLT1L LTR MaLR 0 390 342 275 85 21 0 chr3 191748308 191748355 -35776223 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 1597 198 47 17 chr3 191748392 191748736 -35775842 + MLT1A1 LTR MaLR 12 365 0 350 285 24 0 chr3 191748891 191749014 -35775564 - L1MEc LINE L1 -6160 236 111 21 71 0 0 chr3 191749413 191749455 -35775123 + AT_rich Low_complexity Low_complexity 1 42 0 25 51 0 0 chr3 191750184 191750223 -35774355 + AT_rich Low_complexity Low_complexity 1 39 0 4893 140 43 62 chr3 191750226 191750378 -35774200 - L1MA6 LINE L1 -13 6287 6134 1433 131 9 146 chr3 191750378 191750714 -35773864 + AluJo SINE Alu 1 290 -22 4893 140 43 62 chr3 191750714 191751282 -35773296 - L1MA6 LINE L1 -166 6134 5591 2451 71 0 13 chr3 191751282 191751590 -35772988 - AluY SINE Alu -7 304 1 4893 140 43 62 chr3 191751590 191751920 -35772658 - L1MA6 LINE L1 -709 5591 5256 241 235 0 59 chr3 191752723 191752808 -35771770 - L1MC5 LINE L1 -44 7917 7838 286 347 103 50 chr3 191752925 191753294 -35771284 + L2 LINE L2 2140 2488 -826 1262 173 36 55 chr3 191753294 191753624 -35770954 - MER33 DNA MER1_type 0 324 1 286 347 103 50 chr3 191753624 191753865 -35770713 + L2 LINE L2 2488 2839 -475 517 234 36 36 chr3 191754216 191754383 -35770195 - MLT1L LTR MaLR -446 169 3 253 258 8 102 chr3 191754555 191754683 -35769895 - MIR SINE MIR -62 200 85 849 179 13 13 chr3 191754772 191754928 -35769650 + MER5A DNA MER1_type 34 189 0 193 288 55 27 chr3 191755182 191755255 -35769323 + L3b LINE CR1 1285 1359 -224 308 136 106 0 chr3 191755878 191755944 -35768634 + MIR SINE MIR 78 150 -112 681 199 15 75 chr3 191755945 191756011 -35768567 - MER5A DNA MER1_type 0 189 121 2272 104 0 0 chr3 191756011 191756318 -35768260 + AluSg SINE Alu 1 307 -3 681 199 15 75 chr3 191756318 191756452 -35768126 - MER5A DNA MER1_type -68 121 1 252 293 83 11 chr3 191756754 191756928 -35767650 + L1ME LINE L1 5515 5707 -414 468 35 0 0 chr3 191757102 191757160 -35767418 + (TG)n Simple_repeat Simple_repeat 2 59 0 212 219 134 37 chr3 191758213 191758295 -35766283 - L2 LINE L2 -188 3084 2995 299 347 41 16 chr3 191758340 191758461 -35766117 + L2 LINE L2 3148 3271 -1 252 86 0 0 chr3 191758821 191758856 -35765722 + (CA)n Simple_repeat Simple_repeat 2 36 0 1240 169 45 4 chr3 191759633 191759900 -35764678 - MER33 DNA MER1_type -8 316 39 22 0 0 0 chr3 191760459 191760481 -35764097 + AT_rich Low_complexity Low_complexity 1 22 0 183 279 0 0 chr3 191760848 191760891 -35763687 + L3 LINE CR1 1429 1471 -106 372 188 200 0 chr3 191761128 191761213 -35763365 - L2 LINE L2 -26 3287 3186 24 67 0 0 chr3 191761238 191761283 -35763295 + AT_rich Low_complexity Low_complexity 1 45 0 1451 149 118 0 chr3 191761795 191762091 -35762487 + L1MA8 LINE L1 5959 6289 -2 1788 118 96 0 chr3 191762790 191763060 -35761518 + AluSg SINE Alu 3 298 -12 190 294 59 0 chr3 191763212 191763263 -35761315 - L2 LINE L2 -191 3081 3028 397 274 76 6 chr3 191763975 191764132 -35760446 + L1ME LINE L1 5482 5649 -472 216 0 0 0 chr3 191765802 191765826 -35758752 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2352 54 4 0 chr3 191765830 191766109 -35758469 - AluY SINE Alu -31 280 1 199 245 0 0 chr3 191766156 191766205 -35758373 - MER5A DNA MER1_type 0 189 141 1510 118 18 13 chr3 191766296 191766525 -35758053 + MER30 DNA MER1_type 1 230 0 23 33 0 0 chr3 191768202 191768232 -35756346 + AT_rich Low_complexity Low_complexity 1 30 0 228 283 53 35 chr3 191768319 191768432 -35756146 - L1M1 LINE L1 -3900 3665 3551 235 278 95 71 chr3 191769770 191770108 -35754470 + L1ME LINE L1 5475 5820 -301 25 31 0 0 chr3 191770688 191770720 -35753858 + AT_rich Low_complexity Low_complexity 1 32 0 731 208 66 59 chr3 191770959 191771247 -35753331 - MER34B LTR ERV1 0 565 276 1939 131 3 32 chr3 191771274 191771634 -35752944 + AluSx SINE Alu 5 355 0 438 221 9 83 chr3 191771634 191771806 -35752772 - MER34 LTR ERV1 -278 287 78 363 60 0 0 chr3 191771806 191771856 -35752722 + (TTTTG)n Simple_repeat Simple_repeat 3 52 0 438 221 9 83 chr3 191771856 191771929 -35752649 - MER34 LTR ERV1 -487 78 1 801 176 0 23 chr3 191772323 191772454 -35752124 - FLAM_A SINE Alu -5 128 1 723 114 195 0 chr3 191772600 191772723 -35751855 - AluSg/x SINE Alu -18 294 148 216 0 0 0 chr3 191773058 191773082 -35751496 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 247 304 89 0 chr3 191773538 191773673 -35750905 + MIR SINE MIR 106 252 -10 3141 176 18 9 chr3 191773774 191774343 -35750235 - MER39 LTR ERV1 -1 706 133 443 230 46 0 chr3 191775745 191775832 -35748746 + L2 LINE L2 3166 3256 -16 247 220 20 0 chr3 191775791 191775841 -35748737 + MIR SINE MIR 212 262 0 * 825 242 16 5 chr3 191775841 191776027 -35748551 - MIR SINE MIR -66 196 9 598 218 95 22 chr3 191777179 191777358 -35747220 + MIR SINE MIR 59 250 -12 365 240 67 0 chr3 191778373 191778448 -35746130 - MIR SINE MIR -152 110 31 21 71 0 0 chr3 191778459 191778501 -35746077 + AT_rich Low_complexity Low_complexity 1 42 0 198 289 0 0 chr3 191778686 191778731 -35745847 + L2 LINE L2 3245 3289 -24 324 48 0 0 chr3 191779748 191779790 -35744788 + (TG)n Simple_repeat Simple_repeat 2 43 0 282 239 70 0 chr3 191779861 191779932 -35744646 + MLT1K LTR MaLR 511 586 -2 206 242 45 30 chr3 191780062 191780128 -35744450 - L2 LINE L2 -2 3270 3204 231 425 48 11 chr3 191780288 191780474 -35744104 - L2 LINE L2 -244 3028 2836 228 211 0 0 chr3 191780615 191780667 -35743911 - L1MC5 LINE L1 -85 7876 7825 304 324 35 35 chr3 191780667 191780705 -35743873 - L1M LINE L1 -2407 5401 5364 2110 111 0 39 chr3 191780705 191781012 -35743566 + AluSx SINE Alu 1 295 -17 304 324 35 35 chr3 191781012 191781118 -35743460 - L1M LINE L1 -2443 5365 5257 505 311 34 63 chr3 191781154 191782294 -35742284 - L1M4 LINE L1 -907 5239 4133 1152 189 70 120 chr3 191782315 191782505 -35742073 + MLT1B LTR MaLR 10 171 -219 350 21 21 0 chr3 191782505 191782552 -35742026 + (CA)n Simple_repeat Simple_repeat 2 49 0 1152 189 70 120 chr3 191782552 191782762 -35741816 + MLT1B LTR MaLR 171 390 0 21 36 0 0 chr3 191782831 191782859 -35741719 + AT_rich Low_complexity Low_complexity 1 28 0 380 305 7 0 chr3 191782915 191783066 -35741512 - L1M4 LINE L1 -2178 3968 3817 198 354 63 16 chr3 191783288 191783415 -35741163 + L2 LINE L2 3122 3254 -18 281 272 29 88 chr3 191783550 191783686 -35740892 - L2 LINE L2 -894 2420 2293 585 298 80 9 chr3 191783723 191783948 -35740630 - MIR SINE MIR -12 250 10 782 218 0 0 chr3 191784405 191784552 -35740026 + FRAM SINE Alu 16 162 -14 189 213 0 0 chr3 191785379 191785426 -35739152 + GA-rich Low_complexity Low_complexity 2 48 0 462 201 67 37 chr3 191785705 191785839 -35738739 + L2 LINE L2 1900 2037 -1277 315 178 56 44 chr3 191785849 191785939 -35738639 - MER45B DNA AcHobo -12 1028 938 635 159 9 0 chr3 191785947 191786060 -35738518 - MER45B DNA AcHobo -299 741 628 293 345 103 17 chr3 191786945 191787061 -35737517 - L2 LINE L2 -4 3268 3143 623 346 139 32 chr3 191787347 191788060 -35736518 + L2 LINE L2 1991 2779 -535 402 264 47 8 chr3 191788074 191788203 -35736375 - MER94 DNA DNA 0 134 1 375 323 74 83 chr3 191788234 191788655 -35735923 + L2 LINE L2 2829 3245 -27 26 0 0 0 chr3 191788870 191788896 -35735682 + AT_rich Low_complexity Low_complexity 1 26 0 2182 95 0 11 chr3 191789323 191789641 -35734937 + AluSc SINE Alu 1 315 0 231 250 16 0 chr3 191790659 191790723 -35733855 + (TA)n Simple_repeat Simple_repeat 1 65 0 206 337 23 12 chr3 191791883 191791969 -35732609 - L2 LINE L2 -23 3249 3163 2382 83 3 3 chr3 191792328 191792630 -35731948 + AluSp SINE Alu 2 303 -10 283 333 0 22 chr3 191792701 191792791 -35731787 - L2 LINE L2 -3 3269 3182 308 369 8 25 chr3 191793031 191793153 -35731425 + L2 LINE L2 3150 3269 -3 1265 209 45 56 chr3 191793800 191794159 -35730419 - MLT1D LTR MaLR -150 355 1 2451 183 54 53 chr3 191794249 191794800 -35729778 - MLT2B3 LTR ERVL 0 554 3 3734 276 116 26 chr3 191795585 191797072 -35727506 - L2 LINE L2 -511 2803 1182 2304 100 0 7 chr3 191797093 191797402 -35727176 - AluSc SINE Alu -2 307 1 258 295 16 0 chr3 191797407 191797468 -35727110 - L2 LINE L2 -2121 1193 1132 446 246 39 39 chr3 191797481 191797611 -35726967 - MER5B DNA MER1_type -40 138 9 204 40 0 0 chr3 191797821 191797846 -35726732 + (CA)n Simple_repeat Simple_repeat 1 25 0 198 0 0 0 chr3 191797846 191797868 -35726710 + (GA)n Simple_repeat Simple_repeat 1 22 0 650 132 0 0 chr3 191797988 191798079 -35726499 + AluS SINE Alu 1 91 -222 25 51 0 0 chr3 191799501 191799540 -35725038 + AT_rich Low_complexity Low_complexity 1 39 0 22 0 0 0 chr3 191800024 191800046 -35724532 + AT_rich Low_complexity Low_complexity 1 22 0 1901 157 3 0 chr3 191800046 191800345 -35724233 - AluSx SINE Alu -12 300 1 545 76 13 0 chr3 191800393 191800472 -35724106 + (GGAA)n Simple_repeat Simple_repeat 3 82 0 231 181 8 94 chr3 191800973 191801100 -35723478 + (GTGTG)n Simple_repeat Simple_repeat 3 118 0 258 212 10 20 chr3 191801417 191801566 -35723012 + (TGGG)n Simple_repeat Simple_repeat 1 147 0 622 171 0 14 chr3 191801581 191801721 -35722857 + GA-rich Low_complexity Low_complexity 2 139 0 704 246 46 0 chr3 191804015 191804190 -35720388 + MIR SINE MIR 69 251 -11 182 252 19 87 chr3 191804253 191804356 -35720222 - MIR SINE MIR -83 179 84 353 164 14 0 chr3 191804858 191804931 -35719647 + GA-rich Low_complexity Low_complexity 1 74 0 28 29 0 0 chr3 191806164 191806199 -35718379 + AT_rich Low_complexity Low_complexity 1 35 0 2067 123 13 7 chr3 191806838 191807146 -35717432 - AluSx SINE Alu 0 312 3 277 279 23 12 chr3 191807902 191807988 -35716590 + L2 LINE L2 3222 3308 -5 195 352 126 31 chr3 191808621 191808780 -35715798 - MIR SINE MIR -36 226 53 521 296 211 38 chr3 191809018 191809488 -35715090 + L3 LINE CR1 884 1434 -143 340 231 42 74 chr3 191810179 191810395 -35714183 - L1ME4a LINE L1 -208 5913 5705 255 186 0 0 chr3 191810470 191810513 -35714065 - MLT2C2 LTR ERVL 0 464 422 817 204 70 4 chr3 191810585 191810770 -35713808 - MLT2B2 LTR ERVL -17 537 304 1128 164 15 31 chr3 191810773 191810883 -35713695 - MLT2B3 LTR ERVL -362 192 85 3008 183 14 21 chr3 191810883 191811400 -35713178 + MLT2B3 LTR ERVL 1 515 -39 477 0 0 0 chr3 191811400 191811453 -35713125 + (TCTA)n Simple_repeat Simple_repeat 2 54 0 3008 183 14 21 chr3 191811453 191811493 -35713085 + MLT2B3 LTR ERVL 515 554 0 1128 164 15 31 chr3 191811493 191811577 -35713001 - MLT2B3 LTR ERVL -469 85 1 532 268 56 17 chr3 191812383 191812562 -35712016 - MER5A DNA MER1_type -3 186 1 2321 103 0 0 chr3 191815199 191815499 -35709079 + AluSx SINE Alu 1 300 -12 2487 72 0 0 chr3 191815772 191816076 -35708502 + AluY SINE Alu 1 304 -7 328 354 72 6 chr3 191817617 191817798 -35706780 - MIR3 SINE MIR -2 206 14 25 0 0 0 chr3 191819331 191819356 -35705222 + AT_rich Low_complexity Low_complexity 1 25 0 24 32 0 0 chr3 191819589 191819620 -35704958 + AT_rich Low_complexity Low_complexity 1 31 0 24 32 0 0 chr3 191820313 191820344 -35704234 + AT_rich Low_complexity Low_complexity 1 31 0 22 56 0 0 chr3 191821770 191821806 -35702772 + AT_rich Low_complexity Low_complexity 1 36 0 334 289 257 7 chr3 191823503 191823655 -35700923 + MIR SINE MIR 23 212 -50 1136 178 0 0 chr3 191824716 191824901 -35699677 - MER58A DNA MER1_type -4 220 36 680 327 57 16 chr3 191825006 191825254 -35699324 + MLT1I LTR MaLR 85 342 -67 210 313 131 10 chr3 191825298 191825397 -35699181 + L2 LINE L2 3162 3272 0 1564 130 32 0 chr3 191825472 191825725 -35698853 + L1PA16 LINE L1 5904 6164 -2 433 182 11 0 chr3 191825802 191825890 -35698688 + MLT1L LTR MaLR 525 613 -2 337 203 14 0 chr3 191826922 191826991 -35697587 - L3 LINE CR1 -184 1393 1324 351 0 0 0 chr3 191828253 191828292 -35696286 + (CA)n Simple_repeat Simple_repeat 1 39 0 3721 185 27 17 chr3 191829984 191830688 -35693890 + MER50 LTR ERV1 1 711 -23 1597 215 25 80 chr3 191830714 191831142 -35693436 + MLT2D LTR ERVL 1 495 -20 618 221 5 111 chr3 191831621 191831767 -35692811 - MER5B DNA MER1_type -8 170 47 2222 117 0 3 chr3 191831767 191832065 -35692513 - AluSg SINE Alu -13 297 1 618 221 5 111 chr3 191832065 191832108 -35692470 - MER5B DNA MER1_type -131 47 1 296 400 7 7 chr3 191832132 191832282 -35692296 + MIR3 SINE MIR 51 200 -8 443 274 126 9 chr3 191832656 191832871 -35691707 - MER113 DNA MER1_type? -72 449 210 1779 119 34 0 chr3 191832898 191833167 -35691411 + Tigger1 DNA MER2_type 2141 2418 0 425 229 26 33 chr3 191833167 191833320 -35691258 + L1M4 LINE L1 2276 2427 -3719 437 297 67 6 chr3 191834381 191834546 -35690032 - MIR SINE MIR -41 221 47 246 105 0 0 chr3 191835533 191835571 -35689007 + (CAT)n Simple_repeat Simple_repeat 1 38 0 2357 105 0 6 chr3 191835606 191835920 -35688658 + AluSx SINE Alu 1 312 0 1779 142 30 36 chr3 191836449 191836752 -35687826 + AluJb SINE Alu 1 301 -11 376 211 24 89 chr3 191838125 191838248 -35686330 - MER5C DNA MER1_type -200 124 10 2237 151 68 55 chr3 191838287 191838745 -35685833 - MLT2C2 LTR ERVL 0 464 1 1168 246 7 18 chr3 191839264 191839549 -35685029 + AluJo SINE Alu 1 282 -30 207 0 0 0 chr3 191839553 191839576 -35685002 + (CCAA)n Simple_repeat Simple_repeat 2 24 0 22 35 0 0 chr3 191839736 191839765 -35684813 + AT_rich Low_complexity Low_complexity 1 29 0 1337 303 25 12 chr3 191840521 191841172 -35683406 - L2 LINE L2 0 3313 2657 612 216 8 0 chr3 191841750 191841884 -35682694 + L1M4 LINE L1 2969 3103 -3043 268 233 52 17 chr3 191841907 191842023 -35682555 + (TATG)n Simple_repeat Simple_repeat 4 123 0 323 127 18 0 chr3 191842056 191842111 -35682467 + MLT2B1 LTR ERVL 464 519 -1 809 97 43 7 chr3 191842180 191842465 -35682113 + (TA)n Simple_repeat Simple_repeat 1 295 0 1223 203 6 76 chr3 191842472 191842842 -35681736 - MLT2B1 LTR ERVL -71 449 3 305 314 8 41 chr3 191842891 191843012 -35681566 - L2 LINE L2 -2 3311 3195 2318 195 121 20 chr3 191843534 191843569 -35681009 - MLT2B3 LTR ERVL 0 554 524 522 0 0 0 chr3 191843569 191843627 -35680951 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 2318 195 121 20 chr3 191843627 191844094 -35680484 - MLT2B3 LTR ERVL -30 524 1 315 306 79 47 chr3 191846151 191846468 -35678110 + HAL1 LINE L1 236 562 -1945 793 160 8 0 chr3 191846479 191846610 -35677968 - MLT1B LTR MaLR -2 388 257 234 186 0 0 chr3 191846608 191846651 -35677927 - MLT1A2 LTR MaLR -331 43 1 * 835 291 105 42 chr3 191846652 191847127 -35677451 + HAL1 LINE L1 578 1082 -1425 1915 226 72 40 chr3 191847141 191847640 -35676938 - MLT2B1 LTR ERVL 0 520 6 315 295 96 60 chr3 191847672 191847838 -35676740 + HAL1 LINE L1 1083 1254 -1253 987 261 30 45 chr3 191847848 191848274 -35676304 + HAL1 LINE L1 1325 1744 -763 563 330 168 12 chr3 191848350 191848696 -35675882 - LTR33 LTR ERVL -114 407 8 2384 146 79 15 chr3 191850603 191851082 -35673496 + Tigger3b DNA MER2_type 156 665 -566 234 263 0 59 chr3 191951299 191951451 -35573127 + G-rich Low_complexity Low_complexity 5 147 0 392 340 102 15 chr3 191951719 191951916 -35572662 - MLT1I LTR MaLR -4 405 192 272 271 24 12 chr3 191951956 191952041 -35572537 - MLT1I LTR MaLR -284 125 40 357 292 114 47 chr3 191952056 191952354 -35572224 + Charlie8 DNA MER1_type 81 398 -2019 207 0 0 0 chr3 191952425 191952448 -35572130 + (T)n Simple_repeat Simple_repeat 1 23 0 1021 53 8 0 chr3 191952723 191952854 -35571724 + AluY SINE Alu 1 132 -179 288 0 0 0 chr3 191952854 191952886 -35571692 + (A)n Simple_repeat Simple_repeat 1 32 0 368 231 0 0 chr3 191953007 191953085 -35571493 - Charlie1a DNA MER1_type -532 923 846 * 1660 205 25 33 chr3 191953081 191953476 -35571102 - Charlie1a DNA MER1_type -1063 392 1 27 62 0 0 chr3 191953725 191953773 -35570805 + AT_rich Low_complexity Low_complexity 1 48 0 378 289 87 39 chr3 191953776 191953984 -35570594 - L1ME4a LINE L1 -18 6103 5886 40 21 0 0 chr3 191954996 191955043 -35569535 + AT_rich Low_complexity Low_complexity 1 47 0 341 306 76 78 chr3 191955203 191955782 -35568796 + HAL1 LINE L1 1198 1775 -732 251 221 0 13 chr3 191956139 191956216 -35568362 + (TA)n Simple_repeat Simple_repeat 1 76 0 6106 34 1 8 chr3 191956489 191957233 -35567345 - L1PA4 LINE L1 0 6155 5417 1273 193 78 73 chr3 191958519 191958903 -35565675 - MLT1B LTR MaLR 0 390 5 3926 222 78 82 chr3 191958934 191960277 -35564301 - MLT1B-int LTR MaLR -33 1338 1 1237 208 55 90 chr3 191960277 191960676 -35563902 - MLT1B LTR MaLR 0 390 6 191 275 150 0 chr3 191960870 191960950 -35563628 - MIR3 SINE MIR -18 190 99 366 187 13 0 chr3 191962641 191962726 -35561852 + HsTC2 DNA Tc2 1 86 -1812 428 172 221 0 chr3 191962973 191963095 -35561483 + HsTC2 DNA Tc2 1743 1891 -7 1322 111 10 0 chr3 191963886 191964094 -35560484 + L1MA5A LINE L1 6078 6287 -10 4923 57 0 0 chr3 191964116 191964751 -35559827 - L1P LINE L1 -3970 2176 1542 306 189 98 70 chr3 191964811 191964954 -35559624 + L1MC5 LINE L1 7516 7662 -299 1063 164 46 36 chr3 191965122 191965341 -35559237 - MLT1A1 LTR MaLR 0 365 145 423 0 0 0 chr3 191967527 191967574 -35557004 + (CA)n Simple_repeat Simple_repeat 2 48 0 1760 196 16 25 chr3 191969454 191969817 -35554761 + MLT1A1 LTR MaLR 6 365 0 328 328 68 51 chr3 191970773 191970950 -35553628 + MER91A DNA MER1_type 17 196 0 268 295 95 29 chr3 191971684 191971789 -35552789 + MIR SINE MIR 3 114 -148 394 197 0 0 chr3 191971820 191971896 -35552682 - Charlie1 DNA MER1_type -26 2735 2660 2068 112 0 0 chr3 191971903 191972172 -35552406 - AluSx SINE Alu -43 269 1 2144 105 7 3 chr3 191972211 191972496 -35552082 - AluSc SINE Alu -23 286 1 201 227 23 0 chr3 191972549 191972593 -35551985 - MIR3 SINE MIR -13 195 151 373 269 60 52 chr3 191973260 191973394 -35551184 + MIR SINE MIR 22 156 -106 187 223 21 0 chr3 191973655 191973732 -35550846 + (TA)n Simple_repeat Simple_repeat 2 83 -14 243 0 0 0 chr3 191973732 191973759 -35550819 + (TG)n Simple_repeat Simple_repeat 2 28 0 187 223 21 0 chr3 191973759 191973775 -35550803 + (TA)n Simple_repeat Simple_repeat 83 97 0 888 202 17 77 chr3 191974069 191974302 -35550276 + MER20 DNA MER1_type 1 219 0 753 193 16 72 chr3 191974359 191974608 -35549970 + MER106A DNA MER1_type 1 235 -1 196 30 61 0 chr3 191974781 191974814 -35549764 + T-rich Low_complexity Low_complexity 16 50 0 1362 232 0 18 chr3 191974816 191975100 -35549478 - AluJo SINE Alu -33 279 1 386 302 22 45 chr3 191975412 191975644 -35548934 - L2 LINE L2 0 3313 3049 488 273 46 88 chr3 191975712 191975928 -35548650 - MIR SINE MIR -50 212 6 1348 296 99 22 chr3 191976240 191976331 -35548247 - L1MEc LINE L1 -5678 718 635 3548 149 25 21 chr3 191976331 191976981 -35547597 - MER39B LTR ERV1 0 653 2 1348 296 99 22 chr3 191976981 191977524 -35547054 - L1MEc LINE L1 -5761 635 35 5657 45 26 1 chr3 191977536 191978252 -35546326 - L1PA6 LINE L1 -4 6150 5417 330 374 14 7 chr3 191978675 191978814 -35545764 + Tigger8 DNA MER2_type 9 148 -518 330 284 49 66 chr3 191979704 191979887 -35544691 - L1 LINE L1 -1088 5058 4879 25 95 0 0 chr3 191980512 191980586 -35543992 + AT_rich Low_complexity Low_complexity 1 74 0 338 0 24 0 chr3 191980809 191980851 -35543727 + (TG)n Simple_repeat Simple_repeat 2 44 0 252 342 75 48 chr3 191980851 191981038 -35543540 - MLT1L LTR MaLR -78 537 346 279 228 133 109 chr3 191981089 191981300 -35543278 - MLT1L LTR MaLR -360 255 40 396 317 91 30 chr3 191981375 191982065 -35542513 - L1 LINE L1 -2458 3688 2896 1422 209 3 16 chr3 191983113 191983419 -35541159 - AluJb SINE Alu -10 302 1 1991 101 17 7 chr3 191984677 191984964 -35539614 + AluSc SINE Alu 8 297 -12 229 358 12 12 chr3 191984966 191985047 -35539531 - MIR SINE MIR -162 100 20 308 275 199 0 chr3 191985082 191985213 -35539365 - MIR SINE MIR 0 262 106 202 261 115 62 chr3 191986408 191986538 -35538040 + MIR SINE MIR 72 208 -54 229 236 87 62 chr3 191986539 191986700 -35537878 + L1ME LINE L1 5684 5848 -273 22 0 0 0 chr3 191988030 191988052 -35536526 + AT_rich Low_complexity Low_complexity 1 22 0 341 240 0 0 chr3 191988052 191988127 -35536451 + HsTC2 DNA Tc2 8 82 -1816 195 178 356 11 chr3 191988276 191988366 -35536212 - MER5C DNA MER1_type -203 121 1 21 0 0 0 chr3 191988427 191988448 -35536130 + AT_rich Low_complexity Low_complexity 1 21 0 192 127 254 56 chr3 191989208 191989279 -35535299 + L2 LINE L2 3229 3313 0 282 336 98 0 chr3 191990581 191990705 -35533873 - MIR SINE MIR -3 259 118 1591 214 20 50 chr3 191990705 191991106 -35533472 + MLT1B LTR MaLR 1 389 -1 282 336 98 0 chr3 191991106 191991124 -35533454 - MIR SINE MIR -144 118 103 297 277 116 36 chr3 191991613 191991725 -35532853 + L3 LINE CR1 1377 1497 -80 7979 231 51 38 chr3 191991957 191992792 -35531786 - L1ME1 LINE L1 -5 6230 5407 2705 140 21 8 chr3 191992792 191993270 -35531308 - L1MA4 LINE L1 -4 6296 5813 7979 231 51 38 chr3 191993270 191994607 -35529971 - L1ME1 LINE L1 -828 5407 4089 2282 139 3 16 chr3 191994607 191994643 -35529935 + L1PB1 LINE L1 5762 5797 -354 327 49 0 0 chr3 191994643 191994684 -35529894 + (TA)n Simple_repeat Simple_repeat 1 41 0 2282 139 3 16 chr3 191994684 191995034 -35529544 + L1PB1 LINE L1 5797 6143 -8 7979 231 51 38 chr3 191995034 191995127 -35529451 - L1ME1 LINE L1 -2146 4089 3999 2307 94 34 17 chr3 191995127 191995479 -35529099 - L1PA12 LINE L1 0 6168 5811 7979 231 51 38 chr3 191995479 191995989 -35528589 - L1ME1 LINE L1 -2236 3999 3497 2010 124 0 36 chr3 191995989 191996296 -35528282 - AluSq SINE Alu -13 300 5 7979 231 51 38 chr3 191996296 191996958 -35527620 - L1ME1 LINE L1 -2738 3497 2757 1723 282 94 17 chr3 191996956 191997047 -35527531 - L1ME1 LINE L1 -5678 718 635 * 3525 149 25 21 chr3 191997047 191997697 -35526881 - MER39B LTR ERV1 0 653 2 1723 282 94 17 chr3 191997697 191998240 -35526338 - L1ME1 LINE L1 -5761 635 35 4311 57 67 12 chr3 191998252 191998851 -35525727 - L1PA6 LINE L1 -4 6150 5519 2795 96 98 0 chr3 191998924 191999309 -35525269 + LTR46 LTR ERV1 1 432 -28 213 65 0 0 chr3 191999309 191999340 -35525238 + (TG)n Simple_repeat Simple_repeat 2 32 0 2795 96 98 0 chr3 191999340 191999373 -35525205 + LTR46 LTR ERV1 432 460 0 362 297 62 7 chr3 192000403 192000548 -35524030 - MER117 DNA MER1_type -7 190 38 201 74 0 0 chr3 192000934 192000961 -35523617 + (CA)n Simple_repeat Simple_repeat 2 28 0 322 318 19 9 chr3 192001119 192001226 -35523352 + MER5C DNA MER1_type 12 119 -205 19495 161 31 20 chr3 192001261 192003692 -35520886 + L1MA2 LINE L1 14 2417 -5306 580 89 33 0 chr3 192003692 192003782 -35520796 + L1PA5 LINE L1 6062 6154 0 19495 161 31 20 chr3 192003782 192005929 -35518649 + L1MA2 LINE L1 2417 4539 -3184 2266 103 0 3 chr3 192005929 192006241 -35518337 + AluSx SINE Alu 1 311 -1 19495 161 31 20 chr3 192006241 192009283 -35515295 + L1MA2 LINE L1 4539 7717 -6 218 160 20 20 chr3 192009340 192009390 -35515188 + MER5C DNA MER1_type 275 324 0 229 378 0 9 chr3 192009458 192009569 -35515009 + MIR SINE MIR 88 197 -65 744 263 168 29 chr3 192009585 192009966 -35514612 + MLT1J LTR MaLR 77 510 -1 276 239 137 17 chr3 192010448 192010565 -35514013 - L1MC5 LINE L1 -820 7141 7011 21 0 0 0 chr3 192010799 192010820 -35513758 + AT_rich Low_complexity Low_complexity 1 21 0 925 297 64 31 chr3 192010996 192011611 -35512967 + L2 LINE L2 2675 3313 0 1887 191 48 17 chr3 192012755 192013187 -35511391 - MLT1C LTR MaLR 0 467 6 1934 124 17 0 chr3 192013302 192013592 -35510986 - AluSx SINE Alu -17 295 1 212 242 32 0 chr3 192014406 192014468 -35510110 + (TA)n Simple_repeat Simple_repeat 2 65 0 334 292 121 81 chr3 192014981 192015412 -35509166 + L1MEd LINE L1 662 1109 -5010 478 282 45 35 chr3 192015526 192015728 -35508850 - MLT1I LTR MaLR -199 210 7 288 321 66 85 chr3 192015745 192015853 -35508725 + HAL1 LINE L1 1228 1337 -1170 2246 109 0 6 chr3 192015853 192016165 -35508413 + AluSg SINE Alu 1 310 0 288 321 66 85 chr3 192016165 192016585 -35507993 + HAL1 LINE L1 1337 1746 -761 1681 139 26 13 chr3 192016660 192016962 -35507616 - AluSg SINE Alu -4 306 1 2140 233 104 56 chr3 192017603 192017986 -35506592 + MER97a DNA MER1_type? 12 375 -519 1951 149 0 7 chr3 192017986 192018282 -35506296 - AluSx SINE Alu -18 294 1 2140 233 104 56 chr3 192018282 192018736 -35505842 + MER97a DNA MER1_type? 375 889 -5 341 303 83 8 chr3 192019541 192019673 -35504905 + MIR SINE MIR 59 200 -62 286 338 29 31 chr3 192020435 192020620 -35503958 + MIR SINE MIR 74 261 -1 1149 242 40 15 chr3 192020710 192021036 -35503542 - L1ME3A LINE L1 0 6170 5837 27 0 0 0 chr3 192021218 192021245 -35503333 + AT_rich Low_complexity Low_complexity 1 27 0 24 0 0 0 chr3 192022038 192022062 -35502516 + AT_rich Low_complexity Low_complexity 1 24 0 1192 41 0 0 chr3 192022240 192022386 -35502192 + AluY SINE Alu 157 302 -9 226 191 0 24 chr3 192022910 192022952 -35501626 + MLT1L LTR MaLR 349 389 -226 495 300 110 31 chr3 192025771 192025998 -35498580 - MIR SINE MIR 0 262 18 239 261 14 14 chr3 192026093 192026162 -35498416 - MIR3 SINE MIR -6 202 134 222 373 0 0 chr3 192026267 192026342 -35498236 + L2 LINE L2 3231 3305 -8 201 273 0 18 chr3 192027376 192027431 -35497147 + L2 LINE L2 3257 3310 -3 1186 187 40 87 chr3 192027709 192028089 -35496489 + L1ME2 LINE L1 5803 6164 0 292 255 245 30 chr3 192028153 192028353 -35496225 - MARNA DNA Mariner -154 432 190 237 315 22 11 chr3 192029180 192029272 -35495306 + MIR3 SINE MIR 116 208 0 423 307 36 7 chr3 192029810 192029947 -35494631 - L3b LINE CR1 -88 1495 1355 514 269 123 6 chr3 192030109 192030280 -35494298 + MER58A DNA MER1_type 2 192 -32 268 355 100 3 chr3 192031026 192031172 -35493406 - MIR3 SINE MIR -18 190 33 10752 16 0 0 chr3 192031598 192033617 -35490961 - L1HS LINE L1 0 6155 4137 13706 27 0 0 chr3 192033635 192035285 -35489293 + L1P LINE L1 2366 4015 -2131 2395 231 119 27 chr3 192036430 192037096 -35487482 + L1MC4 LINE L1 6937 7709 -333 2187 112 3 3 chr3 192037096 192037400 -35487178 + AluSx SINE Alu 1 304 -8 2395 231 119 27 chr3 192037400 192037632 -35486946 + L1MC4 LINE L1 7709 7918 -124 229 323 88 35 chr3 192039463 192039723 -35484855 + L2 LINE L2 2695 2968 -346 1472 302 88 36 chr3 192039865 192039975 -35484603 - L2 LINE L2 -16 3297 3194 200 83 0 28 chr3 192039975 192040011 -35484567 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 1472 302 88 36 chr3 192040011 192040800 -35483778 - L2 LINE L2 -119 3194 2336 336 83 0 0 chr3 192042021 192042069 -35482509 + (CA)n Simple_repeat Simple_repeat 1 48 0 221 294 117 61 chr3 192043192 192043369 -35481209 - MIR SINE MIR -53 209 28 244 241 92 11 chr3 192043468 192043555 -35481023 + MER20 DNA MER1_type 77 170 -49 1485 208 0 7 chr3 192044342 192044631 -35479947 + AluJb SINE Alu 1 287 -25 1271 148 162 81 chr3 192044647 192045005 -35479573 - MER101B LTR ERV1 -23 547 161 273 253 13 13 chr3 192045083 192045162 -35479416 + CT-rich Low_complexity Low_complexity 3 81 0 661 186 129 21 chr3 192045209 192045349 -35479229 - MER101B LTR ERV1 -415 155 1 482 271 222 10 chr3 192045377 192045584 -35478994 + MIR SINE MIR 5 255 -7 414 57 0 0 chr3 192045584 192045637 -35478941 + (TAAA)n Simple_repeat Simple_repeat 1 53 0 201 74 0 0 chr3 192045815 192045842 -35478736 + (CTG)n Simple_repeat Simple_repeat 1 27 0 182 158 0 53 chr3 192046694 192046732 -35477846 - L3b LINE CR1 -7 1576 1541 622 361 138 21 chr3 192048662 192049294 -35475284 - L2 LINE L2 -474 2840 2135 2392 171 53 12 chr3 192049436 192049927 -35474651 + L1MB8 LINE L1 5667 6177 -1 222 309 103 52 chr3 192051055 192051191 -35473387 + L2 LINE L2 3129 3271 -1 303 326 99 7 chr3 192051310 192051451 -35473127 - MIR SINE MIR -25 237 84 304 289 106 7 chr3 192052538 192052656 -35471922 - L2 LINE L2 -9 3304 3168 328 268 122 32 chr3 192052656 192052779 -35471799 + MER94 DNA DNA 1 134 0 304 289 106 7 chr3 192052779 192052802 -35471776 - L2 LINE L2 -145 3168 3149 901 234 35 0 chr3 192053065 192053262 -35471316 + MER20 DNA MER1_type 16 219 0 205 304 98 11 chr3 192053539 192053631 -35470947 - L2 LINE L2 -1324 1990 1891 426 274 159 25 chr3 192054834 192054991 -35469587 - MER5B DNA MER1_type 0 178 1 374 229 0 0 chr3 192055066 192055136 -35469442 - MER5A DNA MER1_type -106 83 14 364 344 39 6 chr3 192055748 192055928 -35468650 - MER5A DNA MER1_type -2 187 2 240 281 16 16 chr3 192055937 192056001 -35468577 - MER5A DNA MER1_type -3 186 123 2126 118 3 10 chr3 192056185 192056498 -35468080 - AluSx SINE Alu -1 311 1 201 227 23 0 chr3 192056551 192056595 -35467983 - MIR3 SINE MIR -13 195 151 2085 233 104 56 chr3 192057914 192058297 -35466281 + MER97a DNA MER1_type? 12 375 -519 1981 149 0 7 chr3 192058297 192058593 -35465985 - AluSx SINE Alu -18 294 1 2085 233 104 56 chr3 192058593 192059047 -35465531 + MER97a DNA MER1_type? 375 889 -5 344 303 83 8 chr3 192059852 192059984 -35464594 + MIR SINE MIR 59 200 -62 281 338 29 31 chr3 192060746 192060931 -35463647 + MIR SINE MIR 74 261 -1 1133 241 40 15 chr3 192061025 192061349 -35463229 - L1ME3A LINE L1 -2 6168 5837 26 0 0 0 chr3 192061531 192061557 -35463021 + AT_rich Low_complexity Low_complexity 1 26 0 24 0 0 0 chr3 192062350 192062374 -35462204 + AT_rich Low_complexity Low_complexity 1 24 0 819 61 149 0 chr3 192062552 192062666 -35461912 + AluY SINE Alu 157 287 -24 21 0 0 0 chr3 192063248 192063269 -35461309 + AT_rich Low_complexity Low_complexity 1 21 0 37 0 0 0 chr3 192064605 192064642 -35459936 + AT_rich Low_complexity Low_complexity 1 37 0 340 286 36 43 chr3 192065902 192066016 -35458562 + MIR SINE MIR 124 238 -24 1581 138 122 62 chr3 192066016 192066370 -35458208 + THE1C LTR MaLR 1 375 0 340 286 36 43 chr3 192066370 192066395 -35458183 + MIR SINE MIR 238 262 0 1092 232 67 46 chr3 192066741 192067112 -35457466 + MLT1B LTR MaLR 1 379 -11 207 322 34 0 chr3 192067569 192067628 -35456950 - MIR SINE MIR -127 81 21 820 273 87 12 chr3 192067780 192068022 -35456556 - MIR SINE MIR -2 260 1 619 319 50 13 chr3 192068201 192068439 -35456139 + MIR SINE MIR 2 248 -14 218 179 26 0 chr3 192068441 192068480 -35456098 + (CCA)n Simple_repeat Simple_repeat 1 40 0 334 294 156 6 chr3 192068984 192069166 -35455412 + MIR SINE MIR 30 238 -24 1978 136 14 0 chr3 192069573 192069860 -35454718 + AluSx SINE Alu 5 295 -17 676 293 48 38 chr3 192069994 192070284 -35454294 + L2 LINE L2 3019 3311 -2 1563 201 44 85 chr3 192071037 192071564 -35453014 + MLT1D LTR MaLR 1 505 0 825 202 45 63 chr3 192072783 192073006 -35451572 - MER20 DNA MER1_type 0 219 1 592 179 28 69 chr3 192073880 192074025 -35450553 - MER31B LTR ERV1 -76 390 252 407 280 175 0 chr3 192074049 192074192 -35450386 + MIR SINE MIR 15 182 -80 432 289 67 0 chr3 192074205 192074340 -35450238 - MIR SINE MIR -5 257 114 354 274 59 0 chr3 192075383 192075485 -35449093 - MIR SINE MIR -69 193 86 278 317 24 72 chr3 192075549 192075757 -35448821 + L2 LINE L2 2564 2761 -553 216 362 16 93 chr3 192075811 192076068 -35448510 + L2 LINE L2 2826 3062 -210 265 274 171 7 chr3 192076188 192076334 -35448244 + MIR SINE MIR 49 218 -44 183 339 0 0 chr3 192076334 192076390 -35448188 + L2 LINE L2 2712 2767 -547 821 329 135 4 chr3 192076481 192076951 -35447627 + L2 LINE L2 2784 3313 0 181 295 16 49 chr3 192077208 192077269 -35447309 + L2 LINE L2 3214 3272 0 32 26 0 0 chr3 192077410 192077449 -35447129 + AT_rich Low_complexity Low_complexity 1 39 0 2107 86 0 7 chr3 192077849 192078128 -35446450 + AluY SINE Alu 33 309 -2 1884 151 4 0 chr3 192078882 192079160 -35445418 + AluSg SINE Alu 1 279 -31 483 18 0 0 chr3 192079160 192079216 -35445362 + (CA)n Simple_repeat Simple_repeat 1 56 0 28 61 0 0 chr3 192079315 192079364 -35445214 + AT_rich Low_complexity Low_complexity 1 49 0 386 325 45 32 chr3 192079401 192079558 -35445020 - MIR3 SINE MIR -29 179 21 24 0 0 0 chr3 192079796 192079820 -35444758 + AT_rich Low_complexity Low_complexity 1 24 0 336 321 72 5 chr3 192080048 192080257 -35444321 - L1M4c LINE L1 -3526 2856 2634 81 78 0 0 chr3 192080332 192080511 -35444067 + AT_rich Low_complexity Low_complexity 1 179 0 1240 124 5 46 chr3 192080516 192080550 -35444028 - MER2 DNA MER2_type -136 209 175 1919 131 104 18 chr3 192080550 192080885 -35443693 - THE1B LTR MaLR 0 364 1 1240 124 5 46 chr3 192080885 192081068 -35443510 - MER2 DNA MER2_type -170 175 1 315 257 29 19 chr3 192081101 192081206 -35443372 - L1M4c LINE L1 -3840 2542 2437 27 49 0 0 chr3 192081366 192081407 -35443171 + AT_rich Low_complexity Low_complexity 1 41 0 467 138 134 28 chr3 192081458 192081594 -35442984 - MLT1C LTR MaLR -327 140 1 572 107 0 0 chr3 192081645 192081729 -35442849 + AluS SINE Alu 1 84 -229 302 93 56 0 chr3 192081884 192081938 -35442640 + L1MA5 LINE L1 6231 6287 -13 360 215 47 47 chr3 192081968 192082075 -35442503 - MER5A DNA MER1_type -28 161 55 448 292 97 7 chr3 192082085 192082239 -35442339 - MER69A DNA AcHobo -7 170 3 3364 192 34 46 chr3 192082522 192083346 -35441232 - LTR1B LTR ERV1 0 826 13 550 254 37 92 chr3 192083775 192084047 -35440531 - MIR SINE MIR -1 261 5 601 194 6 22 chr3 192084939 192085119 -35439459 + CT-rich Low_complexity Low_complexity 4 180 0 29 28 0 0 chr3 192085483 192085519 -35439059 + AT_rich Low_complexity Low_complexity 1 36 0 23 0 0 0 chr3 192085569 192085592 -35438986 + AT_rich Low_complexity Low_complexity 1 23 0 476 325 51 34 chr3 192086141 192086378 -35438200 - L3b LINE CR1 -12 1571 1331 616 204 18 0 chr3 192086975 192087109 -35437469 + L1PA16 LINE L1 6029 6164 0 1877 129 21 12 chr3 192087112 192087452 -35437126 + L1MA8 LINE L1 5946 6288 -3 451 254 108 8 chr3 192087530 192087660 -35436918 + AluJb SINE Alu 1 143 -169 222 37 0 0 chr3 192087750 192087777 -35436801 + (CA)n Simple_repeat Simple_repeat 2 28 0 294 206 59 0 chr3 192087781 192087849 -35436729 - MER6 DNA MER2_type -339 526 455 9043 172 31 21 chr3 192088114 192089912 -35434666 - L1M4c LINE L1 -4548 1836 21 722 319 94 40 chr3 192090303 192090835 -35433743 - L2 LINE L2 -527 2787 2227 6849 145 18 5 chr3 192090905 192092080 -35432498 + L1P LINE L1 3661 4850 -1296 283 247 74 37 chr3 192092768 192092930 -35431648 + L1ME4a LINE L1 5652 5819 -302 3296 130 44 4 chr3 192093004 192093550 -35431028 - Tigger4(Zombi) DNA MER2_type -1 2730 2163 974 164 42 0 chr3 192093553 192093718 -35430860 - Tigger4(Zombi) DNA MER2_type -2559 172 1 250 209 198 0 chr3 192095085 192095176 -35429402 + L1ME4a LINE L1 5994 6102 -19 206 231 0 0 chr3 192097955 192097994 -35426584 + (CA)n Simple_repeat Simple_repeat 1 39 0 1942 114 10 56 chr3 192098446 192098752 -35425826 - AluSq SINE Alu -21 292 1 1588 162 0 62 chr3 192098761 192099069 -35425509 - AluJo SINE Alu -23 289 1 1253 196 90 42 chr3 192099341 192099743 -35424835 - LTR37A LTR ERV1 0 426 6 21 0 0 0 chr3 192099810 192099831 -35424747 + AT_rich Low_complexity Low_complexity 1 21 0 1841 166 3 3 chr3 192100225 192100521 -35424057 - AluJb SINE Alu -14 298 3 1264 134 0 0 chr3 192101802 192101981 -35422597 + U2 snRNA snRNA 1 179 -9 408 291 168 5 chr3 192102202 192102398 -35422180 + MIR SINE MIR 29 256 -6 352 307 95 0 chr3 192103924 192104061 -35420517 + L1ME4a LINE L1 5951 6100 -21 24 32 0 0 chr3 192104460 192104491 -35420087 + AT_rich Low_complexity Low_complexity 1 31 0 193 294 0 0 chr3 192104775 192104826 -35419752 + L2 LINE L2 3210 3260 -12 1863 114 68 0 chr3 192105650 192105930 -35418648 + AluSq SINE Alu 2 300 -13 1636 224 48 34 chr3 192106728 192107166 -35417412 - MLT1D LTR MaLR -2 503 60 * 2594 204 32 6 chr3 192107154 192107654 -35416924 - MLT2B1 LTR ERVL -7 513 1 380 214 0 60 chr3 192107654 192107738 -35416840 - MLT1D LTR MaLR -426 79 1 204 350 68 28 chr3 192108366 192108543 -35416035 - L2 LINE L2 -659 2655 2472 23 33 0 0 chr3 192111256 192111286 -35413292 + AT_rich Low_complexity Low_complexity 1 30 0 385 237 101 43 chr3 192111800 192111881 -35412697 - MIR SINE MIR -70 192 98 558 249 11 22 chr3 192111881 192112062 -35412516 + MER104 DNA MER2_type 2 180 0 385 237 101 43 chr3 192112062 192112119 -35412459 - MIR SINE MIR -164 98 46 227 280 260 0 chr3 192113813 192113913 -35410665 - MER45C DNA AcHobo -393 560 435 387 235 271 24 chr3 192114055 192114225 -35410353 - MER45C DNA AcHobo -740 213 2 405 248 7 69 chr3 192114631 192114776 -35409802 - MER5B DNA MER1_type -1 177 42 1049 272 46 38 chr3 192114786 192115156 -35409422 - MLT1G1 LTR MaLR -235 355 3 296 306 129 14 chr3 192116430 192116577 -35408001 + MER5A DNA MER1_type 26 189 0 461 280 168 0 chr3 192116600 192116743 -35407835 + MER5A DNA MER1_type 16 182 -7 280 219 14 0 chr3 192116884 192116957 -35407621 + MER116 DNA Mariner 7 80 0 2339 60 0 0 chr3 192117002 192117317 -35407261 - AluY SINE Alu 0 315 1 31 26 0 0 chr3 192117421 192117459 -35407119 + AT_rich Low_complexity Low_complexity 1 38 0 561 30 0 0 chr3 192119005 192119072 -35405506 + (CA)n Simple_repeat Simple_repeat 1 67 0 22 35 0 0 chr3 192119810 192119839 -35404739 + AT_rich Low_complexity Low_complexity 1 29 0 925 293 114 88 chr3 192119839 192120737 -35403841 - L2 LINE L2 -1064 2250 1330 30 27 0 0 chr3 192122198 192122235 -35402343 + AT_rich Low_complexity Low_complexity 1 37 0 2053 135 0 3 chr3 192122953 192123250 -35401328 - AluSq SINE Alu -17 296 1 205 214 18 0 chr3 192123332 192123388 -35401190 + T-rich Low_complexity Low_complexity 4 60 0 25 51 0 0 chr3 192123544 192123583 -35400995 + AT_rich Low_complexity Low_complexity 1 39 0 688 241 37 0 chr3 192124840 192125002 -35399576 - MER69A DNA AcHobo -9 168 1 391 295 30 60 chr3 192125110 192125276 -35399302 - MER5B DNA MER1_type -17 161 1 331 287 138 12 chr3 192125350 192125517 -35399061 - MIR SINE MIR -39 223 36 396 299 152 10 chr3 192126515 192126719 -35397859 + MIR SINE MIR 20 252 -10 180 0 0 0 chr3 192127190 192127210 -35397368 + (TA)n Simple_repeat Simple_repeat 2 21 0 405 293 0 32 chr3 192127258 192127381 -35397197 - L2 LINE L2 -3 3310 3192 389 213 32 53 chr3 192129083 192129177 -35395401 + L2 LINE L2 3181 3272 0 3988 205 22 34 chr3 192129264 192130493 -35394085 - L1MB7 LINE L1 -19 6165 4951 536 197 17 26 chr3 192130496 192130613 -35393965 - Tigger1 DNA MER2_type -19 2399 2284 * 10007 148 29 17 chr3 192130592 192132269 -35392309 - Tigger1 DNA MER2_type -721 1697 1 333 186 0 0 chr3 192132672 192132742 -35391836 + CT-rich Low_complexity Low_complexity 3 72 0 256 80 80 0 chr3 192133455 192133505 -35391073 + CT-rich Low_complexity Low_complexity 4 57 0 629 228 116 30 chr3 192134374 192134606 -35389972 + MER112 DNA MER1_type 2 253 -7 2436 81 3 0 chr3 192134712 192135021 -35389557 - AluSp SINE Alu -3 310 1 30 0 0 0 chr3 192136726 192136756 -35387822 + AT_rich Low_complexity Low_complexity 1 30 0 33 0 0 0 chr3 192136917 192136950 -35387628 + AT_rich Low_complexity Low_complexity 1 33 0 410 293 69 0 chr3 192137428 192137544 -35387034 + MIR SINE MIR 61 184 -78 361 322 132 24 chr3 192139469 192139674 -35384904 - MIR SINE MIR -25 237 11 230 313 20 20 chr3 192140370 192140469 -35384109 - L1ME LINE L1 -462 5659 5561 1833 203 127 7 chr3 192140734 192141198 -35383380 - MLT2B1 LTR ERVL 0 520 1 4337 171 68 20 chr3 192141198 192142064 -35382514 - ERVL-B1 LTR ERVL -7 5757 4850 215 149 0 21 chr3 192142075 192142122 -35382456 + (TA)n Simple_repeat Simple_repeat 1 46 0 23 0 0 0 chr3 192142435 192142458 -35382120 + AT_rich Low_complexity Low_complexity 1 23 0 24 32 0 0 chr3 192144892 192144923 -35379655 + AT_rich Low_complexity Low_complexity 1 31 0 2699 97 13 5 chr3 192145256 192145628 -35378950 - THE1C LTR MaLR 0 375 1 234 0 0 0 chr3 192145900 192145926 -35378652 + (A)n Simple_repeat Simple_repeat 1 26 0 2488 134 5 0 chr3 192147534 192147914 -35376664 - L1PA16 LINE L1 -9 6157 5776 23 33 0 0 chr3 192148284 192148314 -35376264 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 192148517 192148539 -35376039 + AT_rich Low_complexity Low_complexity 1 22 0 1216 273 93 31 chr3 192148569 192148994 -35375584 + MER77 LTR ERV1 183 683 -4 242 146 0 36 chr3 192149303 192149358 -35375220 + (GGAAA)n Simple_repeat Simple_repeat 3 55 0 186 167 0 0 chr3 192149882 192149918 -35374660 + (TATG)n Simple_repeat Simple_repeat 1 36 0 2319 104 0 0 chr3 192150290 192150589 -35373989 + AluSx SINE Alu 1 299 -13 469 295 68 34 chr3 192150873 192151110 -35373468 - MIR SINE MIR 0 262 18 236 382 125 0 chr3 192151115 192151259 -35373319 - MIR3 SINE MIR -21 187 26 38 51 0 0 chr3 192151893 192151952 -35372626 + AT_rich Low_complexity Low_complexity 1 59 0 294 294 96 0 chr3 192152082 192152218 -35372360 + MER103 DNA DNA 17 165 -1 341 270 40 40 chr3 192154344 192154444 -35370134 - MIR SINE MIR -112 150 51 2317 173 5 0 chr3 192155439 192155843 -35368735 - L1MC1 LINE L1 -18 6315 5910 698 159 17 1 chr3 192155855 192155988 -35368590 + L1MC1 LINE L1 5786 5923 -250 1782 162 41 21 chr3 192155988 192156244 -35368334 + MER7A DNA MER2_type 1 265 -2773 2424 132 11 0 chr3 192156244 192156615 -35367963 - THE1C LTR MaLR 0 375 1 1782 162 41 21 chr3 192156615 192156698 -35367880 + MER7A DNA MER2_type 265 345 -1 180 0 0 0 chr3 192156828 192156848 -35367730 + (T)n Simple_repeat Simple_repeat 1 20 0 282 125 0 0 chr3 192158031 192158079 -35366499 + (TC)n Simple_repeat Simple_repeat 1 48 0 189 0 0 0 chr3 192158079 192158100 -35366478 + (TG)n Simple_repeat Simple_repeat 2 22 0 1742 179 126 3 chr3 192159075 192159433 -35365145 + MER93a LTR ERV1 1 402 0 274 300 94 24 chr3 192161982 192162152 -35362426 + L2 LINE L2 2858 3039 -274 313 241 72 12 chr3 192162175 192162258 -35362320 + L2 LINE L2 3225 3312 -1 361 304 65 27 chr3 192162271 192162455 -35362123 - MIR SINE MIR -71 191 1 271 157 29 0 chr3 192164543 192164613 -35359965 + (TA)n Simple_repeat Simple_repeat 1 72 0 242 329 90 32 chr3 192164626 192164781 -35359797 + L3 LINE CR1 1413 1576 -1 28 0 0 0 chr3 192164916 192164944 -35359634 + AT_rich Low_complexity Low_complexity 1 28 0 262 275 14 0 chr3 192165743 192165812 -35358766 + L3 LINE CR1 1507 1576 -1 29 47 0 0 chr3 192166565 192166608 -35357970 + AT_rich Low_complexity Low_complexity 1 43 0 244 330 100 20 chr3 192166827 192166927 -35357651 + L2 LINE L2 3153 3260 -12 2982 272 119 51 chr3 192167367 192168040 -35356538 - HAL1 LINE L1 -6 2501 1875 2561 62 0 0 chr3 192168040 192168345 -35356233 + AluY SINE Alu 1 305 -6 2982 272 119 51 chr3 192168345 192169287 -35355291 - HAL1 LINE L1 -632 1875 999 324 0 0 0 chr3 192169287 192169323 -35355255 + (TG)n Simple_repeat Simple_repeat 1 36 0 212 0 36 0 chr3 192169322 192169350 -35355228 + (GA)n Simple_repeat Simple_repeat 1 29 0 * 2982 272 119 51 chr3 192169323 192169955 -35354623 - HAL1 LINE L1 -1508 999 48 1817 196 63 42 chr3 192171118 192171613 -35352965 + MLT1D LTR MaLR 1 505 0 1113 309 28 55 chr3 192172231 192172759 -35351819 - MLT1H LTR MaLR 0 549 36 2164 126 0 0 chr3 192172846 192173156 -35351422 - AluSx SINE Alu -2 310 1 22 0 0 0 chr3 192173201 192173223 -35351355 + AT_rich Low_complexity Low_complexity 1 22 0 1668 158 3 20 chr3 192173232 192173535 -35351043 - AluJb SINE Alu -14 298 1 476 273 91 18 chr3 192173924 192174089 -35350489 + MER5B DNA MER1_type 1 177 -1 24 53 0 0 chr3 192174420 192174458 -35350120 + AT_rich Low_complexity Low_complexity 1 38 0 28 0 0 0 chr3 192175309 192175337 -35349241 + AT_rich Low_complexity Low_complexity 1 28 0 217 323 167 35 chr3 192176400 192176591 -35347987 + L2 LINE L2 2332 2575 -739 185 0 40 0 chr3 192176591 192176616 -35347962 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 217 323 167 35 chr3 192176616 192176712 -35347866 + L2 LINE L2 2575 2657 -657 185 326 33 33 chr3 192177646 192177738 -35346840 + MIR3 SINE MIR 116 207 -1 383 242 298 6 chr3 192179764 192179925 -35344653 + MER3 DNA MER1_type 2 209 0 1705 203 25 25 chr3 192180076 192180109 -35344469 - MLT1A1 LTR MaLR 0 365 1 1741 202 27 6 chr3 192180109 192180441 -35344137 - MLT1A1 LTR MaLR -26 339 1 313 380 76 6 chr3 192180820 192180978 -35343600 - MIR3 SINE MIR -21 187 19 564 260 212 14 chr3 192181098 192181386 -35343192 + MER113 DNA MER1_type? 2 346 -175 1018 236 59 84 chr3 192181932 192182303 -35342275 - LTR37B LTR ERV1 0 468 110 532 225 48 101 chr3 192182303 192182530 -35342048 + MER20 DNA MER1_type 4 218 -1 1018 236 59 84 chr3 192182530 192182633 -35341945 - LTR37B LTR ERV1 -358 110 6 191 244 0 0 chr3 192183654 192183695 -35340883 + MIR SINE MIR 216 256 -6 363 159 40 58 chr3 192183805 192183950 -35340628 - Alu SINE Alu 0 306 239 3378 177 50 3 chr3 192184109 192184825 -35339753 + L1MA4 LINE L1 5542 6291 -9 24 0 0 0 chr3 192184827 192184851 -35339727 + AT_rich Low_complexity Low_complexity 1 24 0 183 367 73 11 chr3 192184960 192185137 -35339441 - MIR SINE MIR 0 262 75 231 174 0 22 chr3 192185529 192185575 -35339003 + MIR3 SINE MIR 129 173 -35 633 285 63 11 chr3 192185667 192185999 -35338579 - MER57B LTR ERV1 0 403 11 756 295 55 25 chr3 192186000 192186363 -35338215 - MER57A-int LTR ERV1 -389 7148 6775 984 324 21 32 chr3 192187210 192187970 -35336608 - MER57A-int LTR ERV1 -1375 6162 2243 2460 57 24 0 chr3 192188062 192188358 -35336220 + AluY SINE Alu 1 303 -8 1816 187 13 29 chr3 192188372 192188747 -35335831 - MER57A-int LTR ERV1 -1781 5756 5388 607 271 142 25 chr3 192188749 192189066 -35335512 - MER93b LTR ERV1 0 373 20 1932 302 36 36 chr3 192189091 192190004 -35334574 - MER57A-int LTR ERV1 -388 7149 6237 24 0 0 0 chr3 192190343 192190367 -35334211 + AT_rich Low_complexity Low_complexity 1 24 0 1370 298 40 65 chr3 192190592 192191937 -35332641 - MER57A-int LTR ERV1 -1357 6180 2017 324 369 67 24 chr3 192192034 192192362 -35332216 - MER57A-int LTR ERV1 -2924 3877 3536 541 316 65 62 chr3 192193158 192193207 -35331371 - MER57A-int LTR ERV1 -4062 585 538 2305 86 0 7 chr3 192193207 192193508 -35331070 + AluY SINE Alu 1 299 -12 541 316 65 62 chr3 192193508 192193891 -35330687 - MER57A-int LTR ERV1 -4109 538 152 434 49 16 0 chr3 192195004 192195065 -35329513 + (TG)n Simple_repeat Simple_repeat 2 63 0 1797 178 0 0 chr3 192195082 192195368 -35329210 - AluJb SINE Alu -26 286 1 294 291 9 18 chr3 192195666 192195776 -35328802 - MER57A-int LTR ERV1 -5423 1378 1270 1938 168 0 0 chr3 192196211 192196508 -35328070 + AluSx SINE Alu 1 297 -15 3351 35 2 0 chr3 192196508 192196909 -35327669 + L1PA3 LINE L1 5749 6150 -5 274 339 115 12 chr3 192197175 192197340 -35327238 - MER57A-int LTR ERV1 -7342 195 14 380 235 84 67 chr3 192197354 192197533 -35327045 - MER57A LTR ERV1 0 403 192 * 576 262 35 7 chr3 192197530 192197671 -35326907 - MER93b LTR ERV1 -211 162 18 450 259 40 16 chr3 192197717 192197910 -35326668 - MER31-int LTR ERV1 -1503 3433 3338 * 1337 242 87 78 chr3 192197884 192199240 -35325338 - MER31-int LTR ERV1 -1885 3051 1802 2157 127 0 3 chr3 192199240 192199540 -35325038 + AluSx SINE Alu 3 301 -11 1337 242 87 78 chr3 192199540 192199616 -35324962 - MER31-int LTR ERV1 -3134 1802 1728 225 160 20 180 chr3 192199616 192199716 -35324862 + MER34 LTR ERV1 1 84 -458 291 216 129 35 chr3 192199795 192199911 -35324667 + LTR48B LTR ERV1 235 361 -283 794 239 175 22 chr3 192200166 192200444 -35324134 - MER57A LTR ERV1 0 403 113 617 71 0 12 chr3 192200445 192200529 -35324049 + AluSg/x SINE Alu 218 300 -9 1703 130 111 0 chr3 192200905 192201166 -35323412 - AluSx SINE Alu -10 302 13 309 326 61 0 chr3 192201493 192201591 -35322987 - L2 LINE L2 0 3272 3169 248 140 0 0 chr3 192204485 192204535 -35320043 + LTR66 LTR ERVL 394 443 -167 1693 161 3 11 chr3 192204821 192205146 -35319432 - AluSp SINE Alu 0 323 1 2255 81 3 69 chr3 192205169 192205502 -35319076 - AluY SINE Alu 0 311 1 201 372 44 18 chr3 192206260 192206373 -35318205 + MIR SINE MIR 49 164 -98 25 0 0 0 chr3 192206392 192206417 -35318161 + AT_rich Low_complexity Low_complexity 1 25 0 192 343 56 46 chr3 192206781 192206889 -35317689 - MIR SINE MIR -143 119 11 25 51 0 0 chr3 192207566 192207605 -35316973 + AT_rich Low_complexity Low_complexity 1 39 0 188 275 75 62 chr3 192207740 192207820 -35316758 - MIR SINE MIR -63 145 65 456 217 17 25 chr3 192209029 192209149 -35315429 + MER112 DNA MER1_type 1 119 -141 2753 166 0 74 chr3 192209212 192209753 -35314825 + MLT2B2 LTR ERVL 15 515 0 594 252 69 5 chr3 192209753 192209971 -35314607 - LTR37B LTR ERV1 -39 429 198 255 275 30 76 chr3 192210192 192210323 -35314255 + MER112 DNA MER1_type 129 253 -7 201 306 0 0 chr3 192210408 192210457 -35314121 + GA-rich Low_complexity Low_complexity 3 51 0 22 0 0 0 chr3 192211652 192211674 -35312904 + AT_rich Low_complexity Low_complexity 1 22 0 289 264 182 21 chr3 192212347 192212520 -35312058 + MIR SINE MIR 4 199 -63 5732 145 24 16 chr3 192212981 192214625 -35309953 - L1MA8 LINE L1 -3 6288 4632 31 0 0 0 chr3 192215573 192215604 -35308974 + AT_rich Low_complexity Low_complexity 1 31 0 231 269 296 0 chr3 192216879 192216987 -35307591 - L2 LINE L2 0 3272 3133 26 30 0 0 chr3 192217874 192217907 -35306671 + AT_rich Low_complexity Low_complexity 1 33 0 820 254 63 1 chr3 192219501 192219728 -35304850 + MIR SINE MIR 16 258 -4 1929 113 62 0 chr3 192219884 192220158 -35304420 + AluSx SINE Alu 1 291 -21 416 333 174 14 chr3 192222303 192222516 -35302062 - MIR SINE MIR -2 260 14 1650 172 105 6 chr3 192223845 192224177 -35300401 + MLT1A1 LTR MaLR 1 365 0 406 310 101 22 chr3 192224365 192224723 -35299855 + L1ME4a LINE L1 5523 5908 -213 468 297 39 78 chr3 192225872 192226229 -35298349 - MLT1J LTR MaLR -45 466 124 2375 69 10 13 chr3 192226273 192226577 -35298001 + AluY SINE Alu 3 305 -6 316 301 86 18 chr3 192227595 192227758 -35296820 - MER117 DNA MER1_type -2 195 22 398 293 55 82 chr3 192229348 192229676 -35294902 - MLT1I LTR MaLR 0 409 91 274 226 333 0 chr3 192230151 192230253 -35294325 + MIR SINE MIR 34 169 -93 672 278 40 6 chr3 192230471 192230647 -35293931 + MIR SINE MIR 8 189 -73 924 204 14 5 chr3 192230662 192230882 -35293696 - L1M2 LINE L1 -4361 2488 2267 597 254 25 20 chr3 192231117 192231318 -35293260 - THE1C LTR MaLR -9 366 165 1002 168 29 38 chr3 192231430 192231668 -35292910 + MLT1E3 LTR MaLR 389 624 0 494 248 8 8 chr3 192231846 192231975 -35292603 - LTR67 LTR ERVL 0 557 429 535 252 33 13 chr3 192232340 192232491 -35292087 - MIR SINE MIR -62 200 47 7264 36 6 2 chr3 192234004 192234917 -35289661 - L1P LINE L1 -756 5390 4475 238 332 105 20 chr3 192234915 192235598 -35288980 - L1MEc LINE L1 -3974 2422 1682 * 2331 179 84 20 chr3 192235684 192236233 -35288345 - L1MC3 LINE L1 -32 7753 7170 248 138 92 46 chr3 192236237 192236302 -35288276 - MLT1F1 LTR MaLR -465 102 35 314 267 64 60 chr3 192236452 192236508 -35288070 - L1MEc LINE L1 -4901 1495 1441 1465 158 15 4 chr3 192236508 192236774 -35287804 + L1MA6 LINE L1 6020 6288 -12 314 267 64 60 chr3 192236774 192237215 -35287363 - L1MEc LINE L1 -4955 1441 996 684 268 169 72 chr3 192237258 192237922 -35286656 + LTR41 LTR ERVL 36 763 -10 273 328 9 26 chr3 192238157 192238273 -35286305 - L1MEc LINE L1 -5952 253 140 315 0 0 0 chr3 192238779 192238814 -35285764 + (CA)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr3 192239362 192239386 -35285192 + AT_rich Low_complexity Low_complexity 1 24 0 183 178 27 14 chr3 192240496 192240569 -35284009 + (TA)n Simple_repeat Simple_repeat 1 74 0 255 264 143 75 chr3 192240610 192240911 -35283667 + L1ME LINE L1 5328 5677 -444 2027 112 3 14 chr3 192240911 192241243 -35283335 - AluSx SINE Alu 0 331 3 255 264 143 75 chr3 192241243 192241421 -35283157 + L1ME LINE L1 5677 5841 -280 1978 136 0 4 chr3 192241591 192241871 -35282707 + AluSx SINE Alu 1 279 -33 3910 125 60 15 chr3 192242459 192243323 -35281255 + L1PB4 LINE L1 5043 5943 -213 1992 149 3 15 chr3 192243323 192243657 -35280921 + L1PB4 LINE L1 5823 6154 -2 390 282 35 28 chr3 192243833 192243975 -35280603 + MIR SINE MIR 119 261 -1 26 0 0 0 chr3 192244882 192244908 -35279670 + AT_rich Low_complexity Low_complexity 1 26 0 345 313 104 7 chr3 192245806 192245950 -35278628 + MIR SINE MIR 49 206 -56 628 256 73 16 chr3 192246114 192246305 -35278273 + MIR SINE MIR 50 251 -11 2294 88 65 29 chr3 192246415 192246766 -35277812 - THE1B LTR MaLR 0 364 1 318 234 78 0 chr3 192248185 192248262 -35276316 + MIR SINE MIR 7 89 -173 597 286 85 31 chr3 192248262 192248833 -35275745 - MLT1F LTR MaLR 0 590 1 634 221 28 7 chr3 192248835 192248980 -35275598 + MIR SINE MIR 87 234 -28 202 369 19 97 chr3 192248997 192249203 -35275375 + L2 LINE L2 2992 3181 -91 461 285 153 31 chr3 192251520 192251700 -35272878 - MER102b DNA MER1_type -1102 326 169 1528 183 32 11 chr3 192251700 192251984 -35272594 - AluJo SINE Alu -22 290 1 461 285 153 31 chr3 192251984 192251996 -35272582 - MER102b DNA MER1_type -1259 169 160 2377 166 24 5 chr3 192251996 192252411 -35272167 + MSTB LTR MaLR 2 424 -2 461 285 153 31 chr3 192252411 192252505 -35272073 - MER102b DNA MER1_type -1268 160 4 256 251 125 56 chr3 192253840 192254009 -35270569 - MIR SINE MIR -54 208 32 1719 134 3 88 chr3 192254264 192254638 -35269940 - MER4A LTR ERV1 0 664 263 673 133 0 0 chr3 192254640 192254738 -35269840 - MER4A LTR ERV1 -566 98 1 1602 264 48 21 chr3 192256276 192256593 -35267985 + L1ME3A LINE L1 5320 5660 -510 1056 184 0 156 chr3 192256593 192256876 -35267702 + MER8 DNA MER2_type 1 239 0 1602 264 48 21 chr3 192256876 192257118 -35267460 + L1ME3A LINE L1 5660 5894 -276 209 182 18 0 chr3 192257337 192257392 -35267186 + CT-rich Low_complexity Low_complexity 1 56 0 21 57 0 0 chr3 192258078 192258113 -35266465 + AT_rich Low_complexity Low_complexity 1 35 0 326 327 75 0 chr3 192258824 192258931 -35265647 - L2 LINE L2 -1 3312 3198 562 300 48 14 chr3 192258988 192259198 -35265380 + MIR SINE MIR 2 218 -44 22 0 0 0 chr3 192260183 192260205 -35264373 + AT_rich Low_complexity Low_complexity 1 22 0 1019 159 0 0 chr3 192260962 192261113 -35263465 + FRAM SINE Alu 1 151 -25 22 0 0 0 chr3 192261113 192261135 -35263443 + AT_rich Low_complexity Low_complexity 1 22 0 3613 136 10 2 chr3 192261427 192261950 -35262628 + MER1A DNA MER1_type 1 527 0 267 31 0 0 chr3 192261953 192261985 -35262593 + (CA)n Simple_repeat Simple_repeat 1 32 0 238 220 0 0 chr3 192261986 192262036 -35262542 + (TA)n Simple_repeat Simple_repeat 2 51 0 243 309 96 9 chr3 192262040 192262260 -35262318 - L1 LINE L1 -2237 3909 3671 748 190 22 0 chr3 192262262 192262399 -35262179 + MER20 DNA MER1_type 1 140 -79 352 326 80 22 chr3 192262709 192262847 -35261731 + L2 LINE L2 3127 3272 0 22 80 0 0 chr3 192263335 192263385 -35261193 + AT_rich Low_complexity Low_complexity 1 50 0 1024 67 0 14 chr3 192263880 192264039 -35260539 - L1PA6 LINE L1 -159 5995 5862 192 77 0 0 chr3 192264318 192264344 -35260234 + (TC)n Simple_repeat Simple_repeat 1 26 0 433 228 70 18 chr3 192264345 192264459 -35260119 - FLAM_A SINE Alu -13 120 1 24 53 0 0 chr3 192264549 192264587 -35259991 + AT_rich Low_complexity Low_complexity 1 38 0 2349 48 0 7 chr3 192264620 192264915 -35259663 - L1PA6 LINE L1 0 6154 5862 302 133 82 22 chr3 192265833 192265968 -35258610 + (TA)n Simple_repeat Simple_repeat 2 144 0 303 322 83 16 chr3 192266986 192267107 -35257471 + L2 LINE L2 3144 3272 0 227 295 29 38 chr3 192267747 192267852 -35256726 + L2 LINE L2 2254 2357 -957 231 263 18 88 chr3 192267973 192268144 -35256434 + LTR37A LTR ERV1 111 269 -157 441 0 0 0 chr3 192268144 192268193 -35256385 + (TG)n Simple_repeat Simple_repeat 2 50 0 428 103 138 0 chr3 192268194 192268281 -35256297 + LTR37B LTR ERV1 364 462 -6 221 339 198 0 chr3 192271360 192271481 -35253097 + L2 LINE L2 3126 3270 -2 204 254 83 88 chr3 192272157 192272338 -35252240 + L2 LINE L2 1812 1991 -1323 284 327 44 25 chr3 192272521 192272680 -35251898 + L2 LINE L2 2155 2316 -998 3789 132 44 59 chr3 192273495 192274292 -35250286 - LTR1 LTR ERV1 0 785 1 186 275 0 0 chr3 192275187 192275227 -35249351 + L2 LINE L2 3262 3301 -12 1244 187 12 19 chr3 192275250 192275507 -35249071 + MLT1B LTR MaLR 3 257 -133 225 0 0 0 chr3 192276281 192276306 -35248272 + (T)n Simple_repeat Simple_repeat 1 25 0 2714 97 13 5 chr3 192276577 192276949 -35247629 + THE1C LTR MaLR 1 375 0 24 32 0 0 chr3 192277282 192277313 -35247265 + AT_rich Low_complexity Low_complexity 1 31 0 276 152 0 0 chr3 192279874 192279920 -35244658 + MARNA DNA Mariner 199 244 -342 334 201 98 54 chr3 192280594 192280778 -35243800 + L1M4 LINE L1 2793 2984 -3162 648 267 107 85 chr3 192280875 192281380 -35243198 + MLT1H1 LTR MaLR 40 555 0 925 297 61 29 chr3 192281599 192281872 -35242706 + L1M4 LINE L1 3215 3478 -2668 432 0 0 0 chr3 192281872 192281920 -35242658 + (CA)n Simple_repeat Simple_repeat 1 48 0 925 297 61 29 chr3 192281920 192282235 -35242343 + L1M4 LINE L1 3478 3822 -2324 1484 231 100 85 chr3 192282351 192283497 -35241081 + MER57-int LTR ERV1 1888 3051 -1885 950 147 46 30 chr3 192283471 192283668 -35240910 + MER57-int LTR ERV1 5173 5372 -2165 * 489 269 43 14 chr3 192283708 192283849 -35240729 + MER93b LTR ERV1 18 162 -211 28 29 0 0 chr3 192285315 192285350 -35239228 + AT_rich Low_complexity Low_complexity 1 35 0 312 326 61 0 chr3 192286563 192286661 -35237917 + L2 LINE L2 3169 3272 0 503 211 4 84 chr3 192286991 192287218 -35237360 + AluSx SINE Alu 13 221 -91 219 69 0 0 chr3 192338013 192338042 -35186536 + (TGAA)n Simple_repeat Simple_repeat 4 32 0 22 0 0 0 chr3 192338684 192338706 -35185872 + AT_rich Low_complexity Low_complexity 1 22 0 2060 117 14 0 chr3 192339132 192339451 -35185127 - AluSq SINE Alu 0 323 1 2268 107 0 0 chr3 192340430 192340740 -35183838 + AluY SINE Alu 1 310 -1 279 305 68 17 chr3 192341517 192341635 -35182943 + MIR SINE MIR 16 139 -69 186 274 78 0 chr3 192341645 192341696 -35182882 + L2 LINE L2 3210 3264 -8 274 365 176 0 chr3 192342625 192342795 -35181783 - MIR SINE MIR -34 228 29 22 35 0 0 chr3 192342988 192343017 -35181561 + AT_rich Low_complexity Low_complexity 1 29 0 249 341 67 39 chr3 192343490 192343669 -35180909 + L2 LINE L2 3087 3270 -2 352 274 46 91 chr3 192343773 192343992 -35180586 - L2 LINE L2 -1 3312 3104 1428 243 107 45 chr3 192344165 192344671 -35179907 + MLT1F LTR MaLR 1 537 -5 382 329 95 19 chr3 192344680 192344838 -35179740 - L2 LINE L2 -259 3054 2885 271 331 59 44 chr3 192344908 192345044 -35179534 - L2 LINE L2 -579 2735 2598 21 0 0 0 chr3 192345449 192345470 -35179108 + AT_rich Low_complexity Low_complexity 1 21 0 2608 7 0 7 chr3 192345607 192345893 -35178685 - AluYa5 SINE Alu -5 306 23 253 140 35 0 chr3 192346255 192346312 -35178266 + (CATA)n Simple_repeat Simple_repeat 4 62 0 180 26 26 51 chr3 192346652 192346691 -35177887 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2219 79 4 4 chr3 192346729 192347006 -35177572 + AluSc SINE Alu 1 277 -32 261 0 0 0 chr3 192347006 192347035 -35177543 + (CAAT)n Simple_repeat Simple_repeat 4 32 0 267 116 0 23 chr3 192347614 192347657 -35176921 + MLT1H LTR MaLR 146 187 -362 225 0 0 0 chr3 192348289 192348314 -35176264 + (TTTA)n Simple_repeat Simple_repeat 2 26 0 23 0 0 0 chr3 192348535 192348558 -35176020 + AT_rich Low_complexity Low_complexity 1 23 0 25 31 0 0 chr3 192349057 192349089 -35175489 + AT_rich Low_complexity Low_complexity 1 32 0 1314 235 101 21 chr3 192349494 192349881 -35174697 + L1ME3A LINE L1 5739 6156 -14 21 71 0 0 chr3 192350107 192350149 -35174429 + AT_rich Low_complexity Low_complexity 1 42 0 193 238 63 63 chr3 192350486 192350549 -35174029 + MIR SINE MIR 43 105 -103 719 179 156 42 chr3 192350630 192350842 -35173736 - Charlie5 DNA MER1_type -2376 236 1 231 349 0 0 chr3 192350846 192350912 -35173666 + MIR3 SINE MIR 97 162 -46 560 310 88 21 chr3 192350919 192351203 -35173375 - MER102b DNA MER1_type -9 332 30 258 314 48 26 chr3 192351893 192352098 -35172480 + MIR3 SINE MIR 14 222 -40 278 259 0 25 chr3 192353949 192354030 -35170548 + MIR SINE MIR 180 258 -4 395 257 3 74 chr3 192354097 192354291 -35170287 + MLT1F1 LTR MaLR 1 226 -369 1829 149 140 9 chr3 192354346 192354689 -35169889 + MSTA LTR MaLR 41 428 0 1013 244 163 19 chr3 192354689 192355006 -35169572 + MLT1F1 LTR MaLR 205 567 0 262 153 85 0 chr3 192355012 192355071 -35169507 + MLT1F1-int LTR MaLR 15 78 -1293 857 235 0 6 chr3 192355295 192355478 -35169100 + MLT1F1-int LTR MaLR 420 601 -770 446 317 18 12 chr3 192355717 192355881 -35168697 + MLT1F1-int LTR MaLR 698 862 -509 527 268 13 94 chr3 192356033 192356257 -35168321 + MLT1F1-int LTR MaLR 982 1187 -184 25 31 0 0 chr3 192356369 192356401 -35168177 + AT_rich Low_complexity Low_complexity 1 32 0 26 0 0 0 chr3 192356452 192356478 -35168100 + AT_rich Low_complexity Low_complexity 1 26 0 27 0 0 0 chr3 192356538 192356565 -35168013 + AT_rich Low_complexity Low_complexity 1 27 0 211 258 194 0 chr3 192357249 192357342 -35167236 + MIR SINE MIR 32 142 -66 690 216 111 63 chr3 192357376 192357834 -35166744 + MER113 DNA MER1_type? 7 486 -35 385 273 180 0 chr3 192358041 192358213 -35166365 + MIR SINE MIR 50 252 -10 318 296 79 11 chr3 192358745 192358935 -35165643 - MIR SINE MIR -53 209 4 613 282 28 28 chr3 192359750 192359963 -35164615 - MIR SINE MIR -41 221 9 2192 124 3 0 chr3 192360081 192360387 -35164191 - AluSx SINE Alu -5 307 1 5110 141 34 2 chr3 192360518 192361464 -35163114 + L1PB4 LINE L1 5156 6133 -23 490 233 18 61 chr3 192361986 192362149 -35162429 - MIR SINE MIR -1 261 106 658 149 196 7 chr3 192362289 192362437 -35162141 - MER5B DNA MER1_type -2 176 1 295 296 82 10 chr3 192363682 192363780 -35160798 - L2 LINE L2 -9 3263 3159 24 0 0 0 chr3 192365765 192365789 -35158789 + GC_rich Low_complexity Low_complexity 1 24 0 288 0 0 0 chr3 192366569 192366601 -35157977 + (TG)n Simple_repeat Simple_repeat 2 33 0 1703 160 0 34 chr3 192368084 192368404 -35156174 + AluJb SINE Alu 1 310 0 35 78 0 0 chr3 192369002 192369079 -35155499 + AT_rich Low_complexity Low_complexity 1 77 0 21 0 0 0 chr3 192369309 192369330 -35155248 + AT_rich Low_complexity Low_complexity 1 21 0 2412 57 0 0 chr3 192369996 192370313 -35154265 + AluSc SINE Alu 1 317 0 930 166 114 24 chr3 192371025 192371236 -35153342 - MSTA LTR MaLR -1 427 198 282 256 87 66 chr3 192371541 192371697 -35152881 - MIR SINE MIR -64 144 30 300 267 152 47 chr3 192371750 192371941 -35152637 - MIR SINE MIR -44 218 8 24 32 0 0 chr3 192372093 192372124 -35152454 + AT_rich Low_complexity Low_complexity 1 31 0 383 299 58 73 chr3 192372380 192372775 -35151803 + MLT1J LTR MaLR 90 478 -33 2235 112 3 0 chr3 192373073 192373385 -35151193 + AluSq SINE Alu 1 313 0 205 88 29 0 chr3 192373948 192373982 -35150596 + (CAAAAA)n Simple_repeat Simple_repeat 2 36 0 486 49 0 0 chr3 192376328 192376389 -35148189 + (TC)n Simple_repeat Simple_repeat 2 62 0 719 329 128 13 chr3 192377223 192377814 -35146764 + L2 LINE L2 2375 3021 -251 7268 102 6 22 chr3 192377881 192378956 -35145622 + MER11C LTR ERVK 1 1057 -14 384 290 0 11 chr3 192379060 192379153 -35145425 + L2 LINE L2 3179 3270 -43 444 305 54 20 chr3 192379372 192379575 -35145003 + MIR SINE MIR 5 214 -48 22 35 0 0 chr3 192379923 192379952 -35144626 + AT_rich Low_complexity Low_complexity 1 29 0 180 97 0 0 chr3 192380264 192380295 -35144283 + (A)n Simple_repeat Simple_repeat 1 31 0 1353 98 0 0 chr3 192380298 192380471 -35144107 + AluY SINE Alu 1 173 -138 314 128 0 0 chr3 192380619 192380666 -35143912 + SATR1 Satellite Satellite 332 378 -92 704 50 30 0 chr3 192380668 192380769 -35143809 + AluSg/x SINE Alu 201 304 -8 253 227 41 93 chr3 192381177 192381274 -35143304 - MIR SINE MIR -74 188 97 288 327 54 29 chr3 192381707 192381912 -35142666 + MER102a DNA MER1_type 115 324 -6 1682 162 7 37 chr3 192382069 192382366 -35142212 + AluJb SINE Alu 1 288 -24 2570 168 151 25 chr3 192382592 192387906 -35136672 + SATR1 Satellite Satellite 1 5982 0 2329 164 96 25 chr3 192387936 192389855 -35134723 + SATR1 Satellite Satellite 1 2054 -24 1198 184 5 14 chr3 192389855 192390067 -35134511 - AluJb SINE Alu -98 214 5 246 298 218 24 chr3 192390914 192391038 -35133540 - MIR SINE MIR -34 228 81 213 163 82 0 chr3 192391478 192391527 -35133051 + GA-rich Low_complexity Low_complexity 2 54 0 2120 121 0 10 chr3 192391615 192391912 -35132666 - AluSc SINE Alu -15 294 1 27 0 0 0 chr3 192392154 192392181 -35132397 + AT_rich Low_complexity Low_complexity 1 27 0 272 346 44 39 chr3 192392181 192392363 -35132215 + MER5A DNA MER1_type 7 189 0 279 378 44 15 chr3 192392738 192392942 -35131636 - MIR SINE MIR 0 262 53 2465 71 0 0 chr3 192394025 192394336 -35130242 + AluY SINE Alu 1 311 0 354 327 171 24 chr3 192394390 192394595 -35129983 + MIR SINE MIR 20 254 -8 200 260 143 0 chr3 192394817 192394894 -35129684 + MIR SINE MIR 119 206 -56 202 189 0 0 chr3 192395613 192395650 -35128928 + (TG)n Simple_repeat Simple_repeat 2 38 0 497 303 15 0 chr3 192395912 192396044 -35128534 + MIR SINE MIR 6 139 -123 1100 171 84 70 chr3 192396672 192396959 -35127619 + MER58B DNA MER1_type 9 299 -42 365 323 92 12 chr3 192397462 192397626 -35126952 - L2 LINE L2 -16 3297 3121 1317 176 42 0 chr3 192397642 192397904 -35126674 + L1MB3 LINE L1 5908 6180 -3 661 243 29 50 chr3 192397913 192398152 -35126426 + HAL1 LINE L1 1413 1646 -861 302 291 157 27 chr3 192398499 192398722 -35125856 - L2 LINE L2 -245 3068 2817 234 316 117 24 chr3 192398962 192399168 -35125410 + MER89 LTR ERV1 269 493 -66 1310 246 82 80 chr3 192400131 192400681 -35123897 - MER77 LTR ERV1 -14 591 41 947 72 16 0 chr3 192400991 192401116 -35123462 - AluY SINE Alu -184 127 1 247 309 15 0 chr3 192401822 192401890 -35122688 + L2 LINE L2 3245 3313 0 282 333 71 28 chr3 192401913 192402054 -35122524 - MIR SINE MIR -54 154 8 1803 194 38 65 chr3 192402130 192402610 -35121968 - MLT1C LTR MaLR 0 467 1 261 240 13 13 chr3 192402784 192402859 -35121719 + MER103 DNA DNA 18 92 -74 2511 146 19 23 chr3 192403163 192403596 -35120982 - Tigger2a DNA MER2_type -2 432 2 350 109 31 0 chr3 192403878 192403942 -35120636 + T-rich Low_complexity Low_complexity 2 67 0 4113 207 55 7 chr3 192405442 192405538 -35119040 - L1MA9 LINE L1 -38 6274 6184 216 0 0 0 chr3 192405538 192405562 -35119016 + (TG)n Simple_repeat Simple_repeat 1 24 0 4113 207 55 7 chr3 192405562 192406403 -35118175 - L1MA9 LINE L1 -128 6184 5384 234 0 0 0 chr3 192406403 192406429 -35118149 + (TG)n Simple_repeat Simple_repeat 1 26 0 * 342 0 0 0 chr3 192406428 192406466 -35118112 + (GA)n Simple_repeat Simple_repeat 1 38 0 4113 207 55 7 chr3 192406429 192406611 -35117967 - L1MA9 LINE L1 -928 5384 5142 4708 205 69 11 chr3 192406615 192407763 -35116815 + L1MA9 LINE L1 3929 5142 -1004 208 373 62 19 chr3 192407879 192408040 -35116538 + L2 LINE L2 2916 3083 -189 2605 161 2 5 chr3 192408128 192408538 -35116040 - LTR3 LTR ERVK -2 430 22 593 161 85 8 chr3 192408870 192408988 -35115590 + MER33 DNA MER1_type 6 132 -192 39048 79 7 8 chr3 192408999 192415141 -35109437 + L1PA6 LINE L1 11 6149 -5 341 172 151 75 chr3 192415150 192415336 -35109242 + MER33 DNA MER1_type 164 363 0 1925 106 170 0 chr3 192415642 192415953 -35108625 + THE1B LTR MaLR 1 364 0 195 360 144 35 chr3 192416240 192416817 -35107761 - L2 LINE L2 -505 2809 2170 401 299 35 21 chr3 192417244 192417388 -35107190 + MIR3 SINE MIR 10 155 -53 2061 122 10 3 chr3 192417607 192417901 -35106677 - AluSq SINE Alu -16 297 2 23 68 0 0 chr3 192418278 192418322 -35106256 + AT_rich Low_complexity Low_complexity 1 44 0 26 50 0 0 chr3 192418375 192418415 -35106163 + AT_rich Low_complexity Low_complexity 1 40 0 2240 124 0 3 chr3 192419436 192419743 -35104835 - AluSq SINE Alu -7 306 1 287 59 39 0 chr3 192421039 192421090 -35103488 + L1MA3 LINE L1 6253 6305 0 306 254 194 0 chr3 192421230 192421395 -35103183 + MIR SINE MIR 51 247 -15 438 293 130 26 chr3 192422075 192422286 -35102292 - MIR SINE MIR -11 251 15 1551 153 123 50 chr3 192422286 192422685 -35101893 - MSTA LTR MaLR 0 428 1 401 284 154 12 chr3 192422740 192422902 -35101676 + MER5A DNA MER1_type 3 187 -2 25 51 0 0 chr3 192423072 192423111 -35101467 + AT_rich Low_complexity Low_complexity 1 39 0 320 339 126 31 chr3 192423118 192423372 -35101206 - L2 LINE L2 -8 3264 2987 247 163 23 0 chr3 192423451 192423494 -35101084 + MER5B DNA MER1_type 2 45 -133 5236 149 7 25 chr3 192423890 192424242 -35100336 - L1PB4 LINE L1 -7 6149 5792 2309 109 7 77 chr3 192424242 192424312 -35100266 - THE1C LTR MaLR 0 375 302 2210 75 0 0 chr3 192424312 192424580 -35099998 + AluY SINE Alu 1 268 -43 2309 109 7 77 chr3 192424580 192424912 -35099666 - THE1C LTR MaLR -73 302 1 5236 149 7 25 chr3 192424912 192425586 -35098992 - L1PB4 LINE L1 -364 5792 5136 2291 181 14 38 chr3 192425589 192426096 -35098482 - L1PB4 LINE L1 -2018 4128 3634 1611 231 67 19 chr3 192426097 192426871 -35097707 - L1M4 LINE L1 -3129 3017 2200 414 0 0 0 chr3 192426898 192426944 -35097634 + (TG)n Simple_repeat Simple_repeat 2 47 0 9911 163 8 17 chr3 192426950 192428050 -35096528 - L1MA3 LINE L1 -57 6248 5139 2147 135 0 3 chr3 192428050 192428362 -35096216 - AluSq SINE Alu -2 311 1 9911 163 8 17 chr3 192428362 192430189 -35094389 - L1MA3 LINE L1 -1166 5139 3349 241 261 31 15 chr3 192430796 192430861 -35093717 - Charlie8 DNA MER1_type -2177 240 175 1572 182 3 3 chr3 192430920 192431206 -35093372 - L1MB5 LINE L1 -8 6166 5881 417 225 95 12 chr3 192433178 192433347 -35091231 - MER113 DNA MER1_type? -333 188 6 732 231 0 46 chr3 192433455 192433628 -35090950 + FRAM SINE Alu 1 165 -1 30 45 0 0 chr3 192433944 192433988 -35090590 + AT_rich Low_complexity Low_complexity 1 44 0 1089 232 14 0 chr3 192434192 192434412 -35090166 + MER58A DNA MER1_type 1 223 -1 2075 100 59 0 chr3 192434436 192434725 -35089853 - AluSc SINE Alu -3 306 1 21 0 0 0 chr3 192434801 192434822 -35089756 + AT_rich Low_complexity Low_complexity 1 21 0 651 320 81 47 chr3 192435544 192435987 -35088591 - L3 LINE CR1 -184 1393 936 263 342 17 8 chr3 192436163 192436283 -35088295 - MIR SINE MIR -1 261 141 29 47 0 0 chr3 192436382 192436425 -35088153 + AT_rich Low_complexity Low_complexity 1 43 0 338 311 75 9 chr3 192436531 192436637 -35087941 - MIR SINE MIR -142 120 8 201 344 118 21 chr3 192436684 192436963 -35087615 - L3 LINE CR1 -868 709 404 249 319 17 17 chr3 192436995 192437111 -35087467 + L1ME4a LINE L1 5548 5663 -458 270 187 104 60 chr3 192437258 192437392 -35087186 + L1ME4a LINE L1 5817 5956 -165 271 239 0 109 chr3 192438052 192438144 -35086434 + MER91B DNA MER1_type 6 87 -103 238 320 64 47 chr3 192438720 192438892 -35085686 - L2 LINE L2 -1388 1926 1752 21 36 0 0 chr3 192439048 192439076 -35085502 + AT_rich Low_complexity Low_complexity 1 28 0 2232 64 18 7 chr3 192439471 192439795 -35084783 + AluY SINE Alu 1 327 0 870 251 105 3 chr3 192440414 192440961 -35083617 + L1M4 LINE L1 3510 4145 -2001 23 92 0 0 chr3 192440961 192441026 -35083552 + AT_rich Low_complexity Low_complexity 1 65 0 1962 229 134 22 chr3 192441071 192441709 -35082869 + L1M4 LINE L1 4388 4953 -1193 2593 131 41 5 chr3 192441709 192442122 -35082456 + MSTA LTR MaLR 1 428 0 9426 164 24 1 chr3 192442122 192443736 -35080842 + MSTA-int LTR MaLR 1 1651 0 2464 139 46 7 chr3 192443736 192444145 -35080433 + MSTA LTR MaLR 3 428 0 1962 229 134 22 chr3 192444145 192444230 -35080348 + L1M4 LINE L1 4952 5194 -952 1680 240 93 17 chr3 192444223 192444951 -35079627 + L1MD2 LINE L1 3 897 -5512 * 5065 240 57 75 chr3 192444972 192445125 -35079453 + L1MD2 LINE L1 3204 3358 -3048 1573 110 20 0 chr3 192445125 192445380 -35079198 + L1MA2 LINE L1 6045 6304 0 5065 240 57 75 chr3 192445380 192445800 -35078778 + L1MD2 LINE L1 3358 3784 -2622 2472 82 3 0 chr3 192445800 192446105 -35078473 + AluSp SINE Alu 1 306 -7 5065 240 57 75 chr3 192446105 192446958 -35077620 + L1MD2 LINE L1 3784 4650 -1756 1934 188 81 5 chr3 192446958 192447352 -35077226 + MSTB LTR MaLR 1 424 -2 5065 240 57 75 chr3 192447352 192448282 -35076296 + L1MD2 LINE L1 4650 5521 -885 330 226 60 0 chr3 192448301 192448385 -35076193 + L1MC4 LINE L1 6615 6703 -1339 321 218 0 109 chr3 192448310 192448411 -35076167 - L1MC4 LINE L1 -1339 6703 6614 * 3830 164 81 32 chr3 192448411 192449248 -35075330 + L1MD2 LINE L1 5545 6422 -197 237 33 0 0 chr3 192449310 192449340 -35075238 + (TTG)n Simple_repeat Simple_repeat 2 31 0 1893 131 0 3 chr3 192449342 192449624 -35074954 - AluSx SINE Alu -31 281 1 1421 187 19 6 chr3 192450022 192450337 -35074241 - L1MC3 LINE L1 0 7785 7467 270 299 0 0 chr3 192451557 192451624 -35072954 + L2 LINE L2 3205 3271 -1 24 0 0 0 chr3 192452073 192452097 -35072481 + AT_rich Low_complexity Low_complexity 1 24 0 367 344 95 28 chr3 192452494 192452779 -35071799 + L2 LINE L2 2224 2527 -787 1277 156 0 0 chr3 192452812 192453017 -35071561 - Tigger4(Zombi) DNA MER2_type 0 2731 2527 1237 190 198 0 chr3 192453013 192453281 -35071297 - Tigger4(Zombi) DNA MER2_type -2410 321 1 * 226 379 113 28 chr3 192453290 192453654 -35070924 + L2 LINE L2 2579 2973 -341 198 230 50 80 chr3 192453851 192453951 -35070627 + L3 LINE CR1 605 701 -876 * 555 300 73 24 chr3 192453930 192454177 -35070401 - MIR SINE MIR -2 260 2 218 295 26 96 chr3 192454245 192454401 -35070177 + L3 LINE CR1 204 348 -1229 295 328 42 8 chr3 192454567 192454686 -35069892 - MER5A DNA MER1_type 0 189 67 440 252 47 0 chr3 192454832 192454939 -35069639 - MER81 DNA DNA -2 112 1 343 279 178 18 chr3 192455041 192455260 -35069318 + MLT1K LTR MaLR 335 588 0 1009 236 67 20 chr3 192455432 192455686 -35068892 + L3 LINE CR1 742 1007 -570 2324 101 0 0 chr3 192455824 192456121 -35068457 - AluSg SINE Alu -13 297 1 1340 193 38 4 chr3 192456332 192456570 -35068008 + AluJo SINE Alu 37 282 -30 777 316 126 50 chr3 192458194 192459066 -35065512 + L2 LINE L2 1865 2802 -512 322 352 16 0 chr3 192459360 192459488 -35065090 + GA-rich Low_complexity Low_complexity 2 131 0 186 133 0 0 chr3 192459488 192459518 -35065060 + (GGAA)n Simple_repeat Simple_repeat 4 33 0 234 0 0 0 chr3 192459745 192459771 -35064807 + (T)n Simple_repeat Simple_repeat 1 26 0 1920 156 0 3 chr3 192461506 192461813 -35062765 + AluJb SINE Alu 1 306 -6 337 217 0 0 chr3 192463862 192463922 -35060656 + L2 LINE L2 3254 3313 0 482 308 73 29 chr3 192464348 192464760 -35059818 + L1ME LINE L1 5385 5814 -307 447 260 85 55 chr3 192464913 192465113 -35059465 - LTR16C LTR ERVL -177 314 109 482 299 70 12 chr3 192465289 192465533 -35059045 + L1ME1 LINE L1 67 324 -6072 461 171 65 7 chr3 192465539 192465637 -35058941 + L1MD3 LINE L1 6239 6342 -2 1576 264 21 8 chr3 192465644 192466126 -35058452 + L1ME1 LINE L1 2346 2833 -3382 * 1807 225 28 7 chr3 192466122 192466222 -35058356 + L1ME1 LINE L1 5549 5645 -590 2032 149 7 0 chr3 192466222 192466523 -35058055 - AluSx SINE Alu -9 303 1 1807 225 28 7 chr3 192466523 192466844 -35057734 + L1ME1 LINE L1 5645 5979 -256 1229 248 115 49 chr3 192467127 192467615 -35056963 - MLT2B1 LTR ERVL 0 520 1 7578 158 24 45 chr3 192467615 192469070 -35055508 - ERVL-B1 LTR ERVL -7 5757 4334 413 221 47 0 chr3 192469063 192469149 -35055429 + ERVL LTR ERVL 3589 3678 -2086 * 1454 161 17 0 chr3 192469147 192469383 -35055195 - ERVL-B1 LTR ERVL -3657 2107 1868 8088 213 41 14 chr3 192469388 192471011 -35053567 - ERVL-B1 LTR ERVL -4006 1758 84 1501 241 37 3 chr3 192471011 192471364 -35053214 - MLT1A1 LTR MaLR 0 365 1 8088 213 41 14 chr3 192471364 192471450 -35053128 - ERVL-B1 LTR ERVL -5680 84 2 1098 213 66 31 chr3 192471451 192471738 -35052840 - MLT2B1 LTR ERVL 0 520 224 371 229 12 0 chr3 192471743 192471826 -35052752 - MLT2B1 LTR ERVL -429 86 3 297 359 203 19 chr3 192471826 192472492 -35052086 - L2 LINE L2 -821 2493 1706 335 339 25 77 chr3 192473012 192473337 -35051241 + L2 LINE L2 2600 2907 -407 456 271 82 8 chr3 192473351 192473473 -35051105 - MER91C DNA MER1_type -7 133 3 21 0 0 0 chr3 192474304 192474325 -35050253 + AT_rich Low_complexity Low_complexity 1 21 0 4617 172 30 2 chr3 192476739 192477610 -35046968 - L1MB2 LINE L1 -10 6161 5267 5690 145 21 1 chr3 192477612 192478542 -35046036 - Tigger1 DNA MER2_type -4 2414 1466 4514 157 65 29 chr3 192478768 192479743 -35044835 + L1MB7 LINE L1 5180 6184 0 191 369 0 0 chr3 192479758 192479823 -35044755 + MER5C DNA MER1_type 12 76 -248 261 279 0 25 chr3 192480202 192480281 -35044297 + GA-rich Low_complexity Low_complexity 2 78 0 194 271 68 0 chr3 192480443 192480502 -35044076 - L2 LINE L2 -218 3054 2992 895 190 75 0 chr3 192480577 192480751 -35043827 + MER5A DNA MER1_type 3 189 0 1425 284 156 39 chr3 192480818 192482723 -35041855 + HAL1 LINE L1 1 2152 -355 360 340 146 21 chr3 192482765 192483100 -35041478 - L2 LINE L2 -55 3258 2882 1876 161 37 0 chr3 192484874 192485172 -35039406 + THE1B LTR MaLR 56 364 0 1769 136 123 6 chr3 192485196 192485520 -35039058 - THE1C LTR MaLR 0 375 14 828 293 55 74 chr3 192487364 192487949 -35036629 - L2 LINE L2 -1 3312 2637 695 161 93 0 chr3 192487949 192488067 -35036511 - FLAM_A SINE Alu 0 133 5 828 293 55 74 chr3 192488067 192488343 -35036235 - L2 LINE L2 -676 2637 2357 188 273 68 23 chr3 192488511 192488599 -35035979 - MER5A DNA MER1_type 0 189 98 * 246 250 0 17 chr3 192488551 192488611 -35035967 + MER5A DNA MER1_type 55 113 -76 2197 205 74 65 chr3 192489000 192489835 -35034743 + L1ME3A LINE L1 5317 6159 -11 458 146 31 31 chr3 192491229 192491325 -35033253 - L1MC1 LINE L1 0 6333 6238 1199 101 34 0 chr3 192491564 192491742 -35032836 + L1PA11 LINE L1 5991 6174 0 811 114 0 0 chr3 192492451 192492565 -35032013 - FLAM_A SINE Alu -9 133 20 183 244 133 74 chr3 192492924 192493059 -35031519 + MIR3 SINE MIR 60 202 -6 308 284 12 0 chr3 192493736 192493817 -35030761 + MIR3 SINE MIR 125 206 -2 2440 224 5 5 chr3 192494593 192495199 -35029379 - L1 LINE L1 -3005 4560 3955 233 254 0 17 chr3 192495199 192495258 -35029320 - L1 LINE L1 -7500 65 8 3483 249 17 95 chr3 192495258 192496425 -35028153 - L1PA15-16 LINE L1 -3929 2920 1664 1893 164 141 5 chr3 192496425 192496802 -35027776 + MSTA LTR MaLR 1 428 0 9696 161 19 2 chr3 192496802 192498425 -35026153 + MSTA-int LTR MaLR 1 1651 0 2068 149 123 5 chr3 192498425 192498808 -35025770 + MSTA LTR MaLR 1 428 0 3483 249 17 95 chr3 192498808 192499424 -35025154 - L1PA15-16 LINE L1 -5182 1667 1273 266 270 11 0 chr3 192499457 192499546 -35025032 - L1PA15-16 LINE L1 -5352 1498 1409 21 0 0 0 chr3 192499885 192499906 -35024672 + GC_rich Low_complexity Low_complexity 1 21 0 545 322 4 31 chr3 192500524 192500785 -35023793 + MLT1K LTR MaLR 335 588 0 430 279 100 30 chr3 192503652 192503818 -35020760 + MIR3 SINE MIR 25 199 -9 2637 69 3 0 chr3 192503924 192504271 -35020307 - L1PA14 LINE L1 -3 6158 5811 1679 183 3 17 chr3 192504356 192504656 -35019922 - AluJb SINE Alu -15 297 2 22 56 0 0 chr3 192505155 192505191 -35019387 + AT_rich Low_complexity Low_complexity 1 36 0 207 0 0 0 chr3 192505578 192505601 -35018977 + (A)n Simple_repeat Simple_repeat 1 23 0 234 0 0 0 chr3 192505660 192505686 -35018892 + (T)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr3 192505810 192505834 -35018744 + GC_rich Low_complexity Low_complexity 1 24 0 360 254 123 51 chr3 192505877 192506140 -35018438 - L1M2 LINE L1 -5816 1033 678 21 0 0 0 chr3 192506198 192506219 -35018359 + GC_rich Low_complexity Low_complexity 1 21 0 376 355 0 41 chr3 192506863 192506984 -35017594 - L1M2 LINE L1 -5933 916 801 560 346 30 52 chr3 192507128 192507799 -35016779 - L1PA15-16 LINE L1 -6122 727 72 493 302 33 28 chr3 192507903 192508085 -35016493 + MER5A DNA MER1_type 7 189 0 2088 82 61 3 chr3 192510940 192511234 -35013344 - AluY SINE Alu 0 311 1 661 309 29 101 chr3 192512665 192513247 -35011331 + L2 LINE L2 2269 2808 -506 447 19 0 0 chr3 192513496 192513548 -35011030 + (TA)n Simple_repeat Simple_repeat 2 53 0 290 301 81 15 chr3 192513633 192513769 -35010809 + L2 LINE L2 2862 3006 -266 189 352 67 29 chr3 192514205 192514310 -35010268 + MIR SINE MIR 83 191 -71 839 284 109 37 chr3 192515546 192516148 -35008430 - MER115 DNA AcHobo 0 693 6 206 224 20 0 chr3 192516334 192516383 -35008195 + CT-rich Low_complexity Low_complexity 5 54 0 189 320 101 76 chr3 192516616 192516642 -35007936 + L2 LINE L2 1773 1797 -1517 755 207 26 47 chr3 192516642 192516835 -35007743 - MER5A DNA MER1_type 0 189 1 189 320 101 76 chr3 192516835 192517124 -35007454 + L2 LINE L2 1797 2096 -1218 285 29 0 0 chr3 192518493 192518527 -35006051 + (CA)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr3 192519109 192519131 -35005447 + AT_rich Low_complexity Low_complexity 1 22 0 313 283 0 30 chr3 192519188 192519287 -35005291 - MER5B DNA MER1_type -82 96 1 260 306 0 31 chr3 192520509 192520607 -35003971 + L2 LINE L2 3219 3313 0 242 242 45 61 chr3 192520610 192520742 -35003836 - MLT1K LTR MaLR 0 588 459 388 227 114 15 chr3 192521412 192521544 -35003034 - LTR33 LTR ERVL 0 521 377 721 217 133 0 chr3 192521657 192521837 -35002741 + MER20 DNA MER1_type 16 219 0 547 273 51 0 chr3 192521941 192522117 -35002461 - LTR33 LTR ERVL -336 185 1 1758 187 0 0 chr3 192523000 192523294 -35001284 + AluJo SINE Alu 14 307 -5 338 286 80 28 chr3 192523569 192523782 -35000796 - MLT1K LTR MaLR -6 582 359 295 317 28 14 chr3 192523838 192523980 -35000598 - MLT1K LTR MaLR -342 246 103 477 323 70 6 chr3 192524087 192524245 -35000333 - MIR3 SINE MIR -18 190 23 1392 151 0 0 chr3 192525158 192525397 -34999181 - L1MA8 LINE L1 -464 5827 5589 210 71 0 0 chr3 192525784 192525812 -34998766 + (A)n Simple_repeat Simple_repeat 1 28 0 4845 152 17 2 chr3 192525952 192527211 -34997367 - L1PA16 LINE L1 -10 6156 4869 1061 93 111 98 chr3 192527319 192527544 -34997034 - MER30 DNA MER1_type -2 228 1 1763 113 41 16 chr3 192527950 192528308 -34996270 - Tigger4(Zombi) DNA MER2_type 0 2731 1 277 322 11 0 chr3 192528308 192528395 -34996183 + MIR SINE MIR 153 240 -22 275 288 55 54 chr3 192528398 192528539 -34996039 - MIR SINE MIR -63 145 15 468 315 214 40 chr3 192529686 192530407 -34994171 - L2 LINE L2 -503 2811 1966 706 289 39 14 chr3 192531903 192532183 -34992395 + LTR40b LTR ERVL 138 424 -38 234 322 0 11 chr3 192532486 192532573 -34992005 + T-rich Low_complexity Low_complexity 4 89 0 408 276 28 21 chr3 192532625 192532770 -34991808 - L2 LINE L2 -1 3312 3167 181 246 53 18 chr3 192536552 192536609 -34987969 + MER5A DNA MER1_type 109 167 -22 1349 168 86 11 chr3 192537779 192538059 -34986519 - AluJo SINE Alu -7 305 5 960 237 142 12 chr3 192538075 192538412 -34986166 - L1MB8 LINE L1 -1 6177 5797 435 155 36 0 chr3 192538423 192538507 -34986071 - AluS SINE Alu -2 308 222 216 67 0 0 chr3 192538844 192538874 -34985704 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 194 302 35 12 chr3 192538874 192538960 -34985618 - L2 LINE L2 -17 3255 3168 359 319 99 6 chr3 192539395 192539577 -34985001 + MIR SINE MIR 30 228 -34 218 310 1 0 chr3 192539813 192539897 -34984681 + MIR SINE MIR 37 122 -86 978 123 0 7 chr3 192540112 192540258 -34984320 + AluSq/x SINE Alu 1 145 -167 2408 57 3 0 chr3 192540258 192540558 -34984020 + AluY SINE Alu 1 301 -10 26 0 0 0 chr3 192540570 192540596 -34983982 + AT_rich Low_complexity Low_complexity 1 26 0 273 291 90 64 chr3 192542179 192542413 -34982165 + L1ME4a LINE L1 5659 5898 -223 463 197 34 51 chr3 192542473 192542590 -34981988 - MIR SINE MIR -102 160 46 339 197 150 79 chr3 192542620 192542660 -34981918 + L1ME4a LINE L1 5964 6000 -121 2312 90 0 0 chr3 192542660 192542959 -34981619 + AluSp SINE Alu 1 299 -14 339 197 150 79 chr3 192542959 192543045 -34981533 + L1ME4a LINE L1 6000 6099 -22 1536 133 56 44 chr3 192544253 192544523 -34980055 + THE1B LTR MaLR 92 364 0 242 323 57 16 chr3 192544570 192544694 -34979884 - L2 LINE L2 0 3313 3185 943 121 0 0 chr3 192544766 192544898 -34979680 + AluSg SINE Alu 1 132 -178 1646 49 10 0 chr3 192544899 192545103 -34979475 + AluSp SINE Alu 2 207 -106 1918 152 10 0 chr3 192545402 192545711 -34978867 + AluJb SINE Alu 1 312 0 213 150 0 133 chr3 192545779 192545839 -34978739 - L2 LINE L2 -1 3312 3261 180 0 0 0 chr3 192547072 192547092 -34977486 + (TCCC)n Simple_repeat Simple_repeat 2 21 0 2139 113 0 0 chr3 192548870 192549163 -34975415 - AluSg SINE Alu -17 293 1 290 232 143 18 chr3 192549168 192549280 -34975298 - L1ME3A LINE L1 0 6170 6045 1032 171 51 9 chr3 192549585 192549801 -34974777 - L1ME3A LINE L1 -280 5890 5666 191 327 0 0 chr3 192549851 192549906 -34974672 + MIR SINE MIR 148 202 -60 188 184 0 26 chr3 192550601 192550639 -34973939 - L2 LINE L2 -12 3301 3265 711 177 9 0 chr3 192550840 192550953 -34973625 + FLAM_C SINE Alu 4 117 -26 738 111 0 0 chr3 192551059 192551158 -34973420 - AluJ/FLAM SINE Alu -212 100 2 1977 91 42 0 chr3 192551159 192551445 -34973133 - AluSx SINE Alu -13 299 2 1849 141 7 3 chr3 192551573 192551863 -34972715 - AluSx SINE Alu -21 291 1 366 331 48 21 chr3 192554040 192554185 -34970393 - MIR SINE MIR -83 179 31 1808 149 0 0 chr3 192554429 192554711 -34969867 + AluJb SINE Alu 12 293 -19 346 269 168 20 chr3 192557022 192557171 -34967407 - MIR SINE MIR -80 182 12 1420 124 12 99 chr3 192557994 192558316 -34966262 + AluSx SINE Alu 1 294 -18 613 110 0 33 chr3 192558316 192558399 -34966179 + AluSc SINE Alu 133 214 -95 2240 77 0 10 chr3 192558401 192558700 -34965878 + AluSq SINE Alu 1 296 -17 641 112 0 0 chr3 192559256 192559345 -34965233 + AluSg/x SINE Alu 212 300 -10 202 286 202 0 chr3 192559765 192559849 -34964729 - MIR SINE MIR -6 256 156 272 250 188 9 chr3 192560166 192560278 -34964300 + MIR3 SINE MIR 30 161 -47 189 337 31 0 chr3 192560846 192560944 -34963634 + MIR SINE MIR 33 133 -129 663 263 60 30 chr3 192561273 192561505 -34963073 - MIR SINE MIR -18 244 6 2305 73 0 10 chr3 192561522 192561835 -34962743 - AluSg SINE Alu 0 310 1 190 294 94 24 chr3 192562497 192562582 -34961996 + L2 LINE L2 3222 3312 -1 2057 140 7 0 chr3 192562725 192563033 -34961545 + AluSx SINE Alu 1 310 -2 219 69 0 0 chr3 192563034 192563063 -34961515 + (GGAA)n Simple_repeat Simple_repeat 1 29 0 2134 106 0 0 chr3 192563282 192563574 -34961004 + AluSc SINE Alu 1 292 -17 970 192 122 0 chr3 192564091 192564320 -34960258 + Tigger7 DNA MER2_type 2330 2586 -1 243 276 20 10 chr3 192564420 192564518 -34960060 - Charlie7 DNA MER1_type -2506 106 8 466 338 21 0 chr3 192564797 192564942 -34959636 + MIR3 SINE MIR 45 192 -16 521 172 11 129 chr3 192565152 192565338 -34959240 - L1MC5 LINE L1 -36 7925 7762 30 0 0 0 chr3 192565708 192565738 -34958840 + AT_rich Low_complexity Low_complexity 1 30 0 2167 108 0 22 chr3 192565838 192566153 -34958425 - AluSg SINE Alu -2 308 1 184 128 0 51 chr3 192566605 192566644 -34957934 - L2 LINE L2 -1284 2030 1994 30 0 0 0 chr3 192567424 192567454 -34957124 + AT_rich Low_complexity Low_complexity 1 30 0 455 91 30 0 chr3 192567924 192567990 -34956588 + MER4D LTR ERV1 219 286 -617 2024 76 7 28 chr3 192572565 192572894 -34951684 - AluY SINE Alu 0 324 2 1346 222 3 7 chr3 192572900 192573197 -34951381 - AluJo SINE Alu -16 296 1 29 28 0 0 chr3 192574187 192574223 -34950355 + AT_rich Low_complexity Low_complexity 1 36 0 24 67 0 0 chr3 192575251 192575296 -34949282 + AT_rich Low_complexity Low_complexity 1 45 0 23 33 0 0 chr3 192575510 192575540 -34949038 + AT_rich Low_complexity Low_complexity 1 30 0 347 268 65 65 chr3 192575917 192576055 -34948523 - L2 LINE L2 -8 3305 3168 594 125 9 18 chr3 192576607 192576719 -34947859 - L1MB3 LINE L1 -1 6182 6072 30 0 0 0 chr3 192578123 192578153 -34946425 + AT_rich Low_complexity Low_complexity 1 30 0 1572 116 8 0 chr3 192578711 192578952 -34945626 - L1PA13 LINE L1 0 6163 5921 2272 99 19 3 chr3 192578952 192579276 -34945302 + L1P4 LINE L1 5387 5715 -446 2163 116 3 0 chr3 192580607 192580910 -34943668 + AluSc SINE Alu 1 304 -5 188 197 0 45 chr3 192581167 192581233 -34943345 + T-rich Low_complexity Low_complexity 1 63 0 1256 97 121 5 chr3 192581328 192581534 -34943044 - MER30 DNA MER1_type 0 230 1 233 295 200 53 chr3 192581731 192581921 -34942657 - MIR SINE MIR -31 231 14 296 322 72 10 chr3 192584049 192584200 -34940378 + MIR SINE MIR 29 191 -61 401 204 186 9 chr3 192584337 192584450 -34940128 + MER39 LTR ERV1 1 133 -574 1382 166 75 44 chr3 192584456 192584811 -34939767 + MER39 LTR ERV1 340 565 0 260 331 40 32 chr3 192585690 192585814 -34938764 - L3 LINE CR1 -6 1571 1447 210 271 100 0 chr3 192585903 192585973 -34938605 - L3 LINE CR1 -295 1282 1206 22 0 0 0 chr3 192586089 192586111 -34938467 + AT_rich Low_complexity Low_complexity 1 22 0 349 238 57 19 chr3 192586136 192586241 -34938337 - L1ME4a LINE L1 -83 6038 5930 395 351 63 37 chr3 192587703 192588002 -34936576 + L2 LINE L2 3006 3312 -1 2399 104 11 8 chr3 192588943 192589297 -34935281 - THE1A LTR MaLR 0 355 1 11302 92 7 23 chr3 192589297 192590903 -34933675 - THE1A-int LTR MaLR 0 1580 1 882 71 9 0 chr3 192590904 192591017 -34933561 - THE1A LTR MaLR -1 354 241 2006 92 97 5 chr3 192591017 192591378 -34933200 - LTR7 LTR ERV1 0 450 1 3435 112 19 13 chr3 192591378 192591916 -34932662 - HERVH LTR ERV1 0 7713 7173 1187 150 0 0 chr3 192591970 192592163 -34932415 - HERVH LTR ERV1 -765 6948 6756 * 4389 153 14 0 chr3 192592144 192592867 -34931711 - HERVH LTR ERV1 -1873 5840 5108 1140 147 0 0 chr3 192592866 192593036 -34931542 - HERVH LTR ERV1 -2901 4812 4643 * 2017 90 119 8 chr3 192593052 192593413 -34931165 - LTR7 LTR ERV1 0 450 1 1508 124 30 22 chr3 192593413 192593657 -34930921 - THE1A LTR MaLR -109 246 1 1677 222 84 25 chr3 192593840 192594281 -34930297 - MLT1C LTR MaLR 0 467 1 511 253 65 7 chr3 192594311 192594465 -34930113 - MER106A DNA MER1_type -5 231 69 21 36 0 0 chr3 192594583 192594611 -34929967 + AT_rich Low_complexity Low_complexity 1 28 0 1965 145 0 32 chr3 192594761 192595072 -34929506 - AluSx SINE Alu -11 301 1 713 256 44 6 chr3 192595443 192595697 -34928881 + L1MC1 LINE L1 4150 4415 -1731 10397 150 5 2 chr3 192595699 192597355 -34927223 - Tigger1 DNA MER2_type -5 2413 754 3362 154 7 20 chr3 192597397 192597488 -34927090 - Tigger1 DNA MER2_type -1866 552 461 718 65 56 0 chr3 192597488 192597596 -34926982 + L1PA13 LINE L1 6048 6161 -2 3362 154 7 20 chr3 192597596 192598062 -34926516 - Tigger1 DNA MER2_type -1957 461 2 912 256 55 3 chr3 192598082 192598394 -34926184 + L1MC1 LINE L1 4412 4739 -1407 3779 165 36 3 chr3 192598394 192599114 -34925464 + L1MC1 LINE L1 5588 6331 -2 1248 150 341 0 chr3 192599572 192599845 -34924733 + MER47A DNA MER2_type 1 366 0 3264 254 84 47 chr3 192599893 192600666 -34923912 + L1MCb LINE L1 297 1040 -5524 1089 155 126 5 chr3 192600666 192600873 -34923705 - MER46A DNA MER2_type -4 232 1 3264 254 84 47 chr3 192600873 192601372 -34923206 + L1MCb LINE L1 1040 1519 -5045 1998 127 13 25 chr3 192601372 192601688 -34922890 + AluSx SINE Alu 1 312 0 3264 254 84 47 chr3 192601688 192602407 -34922171 + L1MCb LINE L1 1519 2210 -4354 1352 151 54 0 chr3 192602407 192602646 -34921932 + L1PA16 LINE L1 5902 6153 -13 3264 254 84 47 chr3 192602646 192602971 -34921607 + L1MCb LINE L1 2210 2522 -4042 2161 71 20 27 chr3 192602971 192603267 -34921311 - AluY SINE Alu -17 294 1 3264 254 84 47 chr3 192603267 192603821 -34920757 + L1MCb LINE L1 2522 3054 -3510 2167 139 0 0 chr3 192603821 192604122 -34920456 - AluJb SINE Alu -11 301 1 3264 254 84 47 chr3 192604122 192604484 -34920094 + L1MCb LINE L1 3054 3840 -2724 2659 185 23 83 chr3 192604533 192605235 -34919343 + L1MC3 LINE L1 6882 7541 -244 413 252 44 30 chr3 192605252 192605387 -34919191 - MLT1A2 LTR MaLR -56 318 182 824 156 31 36 chr3 192605473 192605609 -34918969 + L1MC2 LINE L1 6153 6289 -55 2250 99 3 10 chr3 192605609 192605921 -34918657 - AluSg SINE Alu 0 310 1 824 156 31 36 chr3 192605921 192605976 -34918602 + L1MC2 LINE L1 6289 6343 -1 2529 140 39 18 chr3 192606086 192606543 -34918035 - MLT1C LTR MaLR 0 467 1 2153 285 96 27 chr3 192607137 192608133 -34916445 - L2 LINE L2 -131 3182 2129 251 277 45 9 chr3 192608227 192608339 -34916239 + L1M3 LINE L1 4730 4845 -1301 225 65 0 0 chr3 192608353 192608384 -34916194 + (TA)n Simple_repeat Simple_repeat 1 31 0 867 270 105 41 chr3 192608501 192608755 -34915823 + L1M3 LINE L1 4950 5186 -994 2151 122 0 0 chr3 192608755 192609076 -34915502 + AluSx SINE Alu 1 321 0 867 270 105 41 chr3 192609076 192609236 -34915342 + L1M3 LINE L1 5186 5334 -846 366 23 0 0 chr3 192609236 192609279 -34915299 + (CA)n Simple_repeat Simple_repeat 2 44 0 867 270 105 41 chr3 192609279 192609676 -34914902 + L1M3 LINE L1 5334 5808 -372 305 333 0 0 chr3 192609687 192609777 -34914801 + L1MC4 LINE L1 6614 6703 -1339 * 385 267 0 0 chr3 192609699 192609789 -34914789 - L1MC4 LINE L1 -1339 6703 6614 229 282 188 0 chr3 192610192 192610309 -34914269 + MER117 DNA MER1_type 2 140 -57 679 322 0 0 chr3 192610729 192610909 -34913669 + MIR3 SINE MIR 27 206 -2 379 256 68 15 chr3 192610960 192611093 -34913485 + MIR SINE MIR 99 238 -24 221 281 146 21 chr3 192611295 192611391 -34913187 - MIR SINE MIR -1 261 154 244 236 0 42 chr3 192611431 192611503 -34913075 + L2 LINE L2 3203 3271 -1 465 217 104 0 chr3 192614220 192614335 -34910243 - FLAM_A SINE Alu -6 127 1 2592 143 41 5 chr3 192614348 192614761 -34909817 + MSTA LTR MaLR 1 428 0 643 172 15 30 chr3 192614903 192615037 -34909541 + MSTA LTR MaLR 297 428 0 255 189 0 0 chr3 192616470 192616523 -34908055 + (TG)n Simple_repeat Simple_repeat 1 53 0 206 280 60 50 chr3 192616858 192616958 -34907620 - MIR SINE MIR -70 192 92 246 344 149 5 chr3 192617049 192617244 -34907334 - MIR SINE MIR -32 230 8 1160 214 114 80 chr3 192618345 192618409 -34906169 - L1ME2 LINE L1 -4 6162 6102 959 231 148 13 chr3 192618409 192618712 -34905866 + MER2 DNA MER2_type 1 344 0 1160 214 114 80 chr3 192618712 192619121 -34905457 - L1ME2 LINE L1 -64 6102 5639 2000 98 6 22 chr3 192619121 192619436 -34905142 - L1MA1 LINE L1 0 6302 5993 1160 214 114 80 chr3 192619436 192619592 -34904986 - L1ME2 LINE L1 -527 5639 5490 2481 223 79 26 chr3 192619595 192620897 -34903681 - L1MC1 LINE L1 -427 6186 4711 * 5060 214 54 39 chr3 192620893 192622827 -34901751 - L1MC1 LINE L1 -1 6332 4374 1791 174 16 10 chr3 192622827 192623137 -34901441 + AluJb SINE Alu 1 312 0 5060 214 54 39 chr3 192623137 192623535 -34901043 - L1MC1 LINE L1 -1959 4374 3983 2240 152 33 31 chr3 192623570 192624119 -34900459 - MLT2A2 LTR ERVL 0 554 1 1423 256 95 20 chr3 192624119 192624752 -34899826 - L1MC1 LINE L1 -1730 4696 4017 1996 122 3 3 chr3 192624775 192625061 -34899517 - AluSx SINE Alu -26 286 1 2880 253 65 29 chr3 192625129 192626709 -34897869 - L1MC1 LINE L1 -2590 3836 2250 570 304 54 39 chr3 192626703 192627204 -34897374 - L1MC1 LINE L1 -4781 1645 1135 * 188 88 59 0 chr3 192627204 192627238 -34897340 + T-rich Low_complexity Low_complexity 4 39 0 1933 157 0 6 chr3 192627241 192627553 -34897025 - AluJb SINE Alu 0 312 3 1426 217 87 41 chr3 192627700 192627731 -34896847 - MSTC LTR MaLR 0 396 368 742 172 0 16 chr3 192627731 192627853 -34896725 + FLAM_C SINE Alu 2 121 -12 1426 217 87 41 chr3 192627853 192628230 -34896348 - MSTC LTR MaLR -28 368 1 1034 219 80 4 chr3 192628235 192628558 -34896020 - MSTC-int LTR MaLR -5 1646 1279 230 95 24 0 chr3 192628617 192628659 -34895919 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 455 278 83 4 chr3 192628683 192628949 -34895629 - L1MEc LINE L1 -5242 1154 868 269 350 60 34 chr3 192629266 192629383 -34895195 + L2 LINE L2 3153 3272 0 227 296 99 0 chr3 192629497 192629568 -34895010 - MIR SINE MIR -162 100 23 1588 206 3 19 chr3 192630012 192630322 -34894256 + AluJb SINE Alu 1 305 -7 1497 129 26 0 chr3 192630509 192630742 -34893836 + L1MB4 LINE L1 5833 6071 -109 1583 214 19 35 chr3 192630745 192631118 -34893460 + MLT1A2 LTR MaLR 1 367 -7 496 95 14 0 chr3 192631118 192631192 -34893386 + L1MB4 LINE L1 6069 6143 -37 468 183 0 12 chr3 192631269 192631351 -34893227 - L1P LINE L1 -1052 5094 5014 3908 93 2 0 chr3 192631351 192631878 -34892700 + L1PA13 LINE L1 5617 6155 -8 489 285 146 25 chr3 192631888 192632204 -34892374 + L1ME LINE L1 2401 2754 -3392 778 304 103 11 chr3 192632309 192633432 -34891146 + L1ME LINE L1 4284 5514 -648 265 229 0 0 chr3 192633477 192633525 -34891053 + LTR33 LTR ERVL 474 521 0 24 32 0 0 chr3 192633642 192633673 -34890905 + AT_rich Low_complexity Low_complexity 1 31 0 189 121 0 0 chr3 192634491 192634524 -34890054 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 1271 184 13 4 chr3 192636759 192636993 -34887585 + AluJo SINE Alu 1 236 -76 326 226 122 52 chr3 192637169 192637284 -34887294 + MIR SINE MIR 20 142 -120 365 268 45 18 chr3 192638589 192638701 -34885877 + MIR SINE MIR 22 136 -126 807 304 37 25 chr3 192638714 192638957 -34885621 - MIR SINE MIR -6 256 11 6494 90 4 0 chr3 192639022 192640058 -34884520 - L1PA11 LINE L1 -2 6172 5141 2182 194 2 38 chr3 192640083 192640532 -34884046 - Tigger2a DNA MER2_type -1 433 1 23 54 0 0 chr3 192640534 192640571 -34884007 + AT_rich Low_complexity Low_complexity 1 37 0 218 215 31 15 chr3 192642112 192642177 -34882401 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 772 135 85 0 chr3 192644138 192644386 -34880192 - L1MA4 LINE L1 -1501 4645 4280 * 6097 157 20 19 chr3 192644381 192646019 -34878559 + L1MA4 LINE L1 4645 6294 -6 277 323 134 46 chr3 192646189 192646561 -34878017 + MLT1J LTR MaLR 37 441 -70 868 315 70 12 chr3 192646571 192647053 -34877525 - L1MC4a LINE L1 -1983 5825 5316 631 309 101 27 chr3 192647308 192648118 -34876460 - L1MC4a LINE L1 -1144 5002 4133 22 0 0 0 chr3 192648369 192648391 -34876187 + AT_rich Low_complexity Low_complexity 1 22 0 195 184 0 0 chr3 192649395 192649433 -34875145 + (TATATG)n Simple_repeat Simple_repeat 5 42 0 28 0 0 0 chr3 192649968 192649996 -34874582 + AT_rich Low_complexity Low_complexity 1 28 0 513 316 36 20 chr3 192650912 192651108 -34873470 + MIR SINE MIR 1 199 -63 28 0 0 0 chr3 192651277 192651305 -34873273 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 192651420 192651441 -34873137 + AT_rich Low_complexity Low_complexity 1 21 0 211 211 0 0 chr3 192652227 192652265 -34872313 + CT-rich Low_complexity Low_complexity 1 38 0 617 123 9 0 chr3 192652590 192652696 -34871882 + (TAGA)n Simple_repeat Simple_repeat 2 108 0 349 296 46 34 chr3 192653096 192653426 -34871152 + L1MEc LINE L1 857 1151 -5054 2497 166 23 27 chr3 192653503 192653990 -34870588 + MER31A LTR ERV1 1 485 0 948 289 121 33 chr3 192654146 192655072 -34869506 + L1PA15-16 LINE L1 1535 2516 -3880 1363 277 78 18 chr3 192655103 192655190 -34869388 + L1MEc LINE L1 2554 2634 -3581 1546 209 3 3 chr3 192655190 192655497 -34869081 + AluSx SINE Alu 1 307 -5 1363 277 78 18 chr3 192655497 192656250 -34868328 + L1MEc LINE L1 2634 3445 -2770 1745 189 3 0 chr3 192656341 192656643 -34867935 + AluJo SINE Alu 3 305 -7 229 330 102 17 chr3 192658617 192658735 -34865843 - L2 LINE L2 -20 3252 3125 2067 127 10 0 chr3 192659762 192660054 -34864524 + AluSq SINE Alu 1 295 -18 386 167 0 33 chr3 192660054 192660144 -34864434 + GA-rich Low_complexity Low_complexity 2 88 0 426 274 59 20 chr3 192660190 192660343 -34864235 + MIR SINE MIR 74 232 -30 243 341 0 11 chr3 192661280 192661371 -34863207 - MER117 DNA MER1_type -107 90 1 6608 42 0 0 chr3 192665744 192666561 -34858017 - L1P LINE L1 -2125 4021 3205 4090 17 4 2 chr3 192666561 192667036 -34857542 + L1PA4 LINE L1 5677 6155 0 3054 100 40 2 chr3 192667373 192667821 -34856757 + MER4C LTR ERV1 1 465 0 219 69 0 0 chr3 192667834 192667863 -34856715 + (TG)n Simple_repeat Simple_repeat 2 30 0 369 332 73 16 chr3 192668578 192668825 -34855753 + MLT1L LTR MaLR 353 613 -2 506 296 126 5 chr3 192669541 192669740 -34854838 + MIR SINE MIR 37 259 -3 248 285 18 105 chr3 192669749 192669977 -34854601 - L2 LINE L2 0 3313 3106 760 311 114 11 chr3 192670350 192670700 -34853878 + MLT1K LTR MaLR 161 546 -42 2142 122 0 0 chr3 192670700 192671003 -34853575 + AluSc SINE Alu 1 303 -6 1335 98 33 23 chr3 192671053 192671268 -34853310 - L1M1 LINE L1 -4849 2716 2500 2202 105 0 6 chr3 192671271 192671615 -34852963 + L1M1 LINE L1 2323 2664 -4901 1473 236 75 3 chr3 192671618 192672004 -34852574 + L1ME1 LINE L1 5401 5814 -352 1228 107 0 0 chr3 192672007 192672185 -34852393 - L1P4 LINE L1 -390 5784 5607 748 123 0 0 chr3 192672193 192672307 -34852271 - L1PA15 LINE L1 -134 6031 5918 * 2466 150 46 10 chr3 192672303 192672806 -34851772 - L1PA15 LINE L1 -454 5711 5190 893 244 34 13 chr3 192672806 192673044 -34851534 + L1ME1 LINE L1 5919 6161 -5 207 0 0 0 chr3 192673304 192673327 -34851251 + (T)n Simple_repeat Simple_repeat 1 23 0 229 320 107 10 chr3 192673347 192673544 -34851034 + L2 LINE L2 2440 2655 -659 22 0 0 0 chr3 192674853 192674875 -34849703 + AT_rich Low_complexity Low_complexity 1 22 0 317 222 69 85 chr3 192674969 192675158 -34849420 - L1ME4a LINE L1 -12 6109 5924 30 45 0 0 chr3 192675265 192675309 -34849269 + AT_rich Low_complexity Low_complexity 1 44 0 656 244 0 0 chr3 192675321 192675444 -34849134 - FLAM_C SINE Alu -10 123 1 637 333 26 11 chr3 192675485 192675807 -34848771 - L1ME4a LINE L1 -434 5687 5361 27 87 0 0 chr3 192675849 192675918 -34848660 + AT_rich Low_complexity Low_complexity 1 69 0 918 29 0 0 chr3 192676683 192676788 -34847790 - AluY SINE Alu -12 299 195 439 262 104 24 chr3 192676982 192677146 -34847432 - Charlie8 DNA MER1_type -2134 283 107 1491 194 43 31 chr3 192677324 192677674 -34846904 - MLT1A1 LTR MaLR 0 365 12 1157 242 92 89 chr3 192677754 192678295 -34846283 + MER77 LTR ERV1 53 595 -10 1768 228 23 8 chr3 192678629 192679019 -34845559 + MSTD LTR MaLR 1 396 0 270 0 0 0 chr3 192679147 192679177 -34845401 + (TA)n Simple_repeat Simple_repeat 1 30 0 431 292 159 35 chr3 192679415 192679672 -34844906 + L3 LINE CR1 1128 1416 -161 201 121 0 0 chr3 192681770 192681803 -34842775 + (CA)n Simple_repeat Simple_repeat 1 33 0 231 268 80 27 chr3 192683075 192683187 -34841391 + MIR SINE MIR 30 147 -115 217 296 77 30 chr3 192683302 192683418 -34841160 - MIR SINE MIR -78 130 30 404 233 165 34 chr3 192685187 192685393 -34839185 + L1ME4a LINE L1 5611 5843 -278 254 294 17 17 chr3 192685584 192685703 -34838875 + (TA)n Simple_repeat Simple_repeat 1 119 0 264 203 30 50 chr3 192685709 192685849 -34838729 - MLT1H LTR MaLR 0 549 460 * 295 261 35 99 chr3 192685816 192685958 -34838620 - MLT1H LTR MaLR -229 320 188 275 191 135 0 chr3 192686017 192686106 -34838472 + L1ME4a LINE L1 6010 6110 -11 3059 27 3 0 chr3 192687729 192688094 -34836484 + L1PA2 LINE L1 5788 6153 -2 2021 129 7 0 chr3 192688369 192688655 -34835923 - AluSq SINE Alu -25 288 1 268 277 59 20 chr3 192689430 192689531 -34835047 - L2 LINE L2 -15 3298 3194 * 462 384 57 25 chr3 192689529 192689896 -34834682 + L2 LINE L2 946 1324 -1990 1229 213 54 35 chr3 192689961 192690314 -34834264 + Tigger7 DNA MER2_type 1 2490 -1 2660 107 5 3 chr3 192690345 192690719 -34833859 - THE1C LTR MaLR 0 375 1 449 313 48 0 chr3 192691024 192691190 -34833388 + MIR SINE MIR 87 260 -2 478 334 122 26 chr3 192691195 192691656 -34832922 + L2 LINE L2 1718 2222 -1092 216 0 0 0 chr3 192691684 192691708 -34832870 + (A)n Simple_repeat Simple_repeat 1 24 0 423 286 62 59 chr3 192691719 192692119 -34832459 - MLT1J LTR MaLR -44 467 1 434 320 22 11 chr3 192692119 192692297 -34832281 + L2 LINE L2 2213 2392 -922 1237 121 0 0 chr3 192692337 192692503 -34832075 - AluSx SINE Alu -13 299 134 496 165 51 0 chr3 192692506 192692664 -34831914 + (TA)n Simple_repeat Simple_repeat 1 166 0 712 145 24 0 chr3 192692669 192692793 -34831785 - AluSx SINE Alu -183 129 3 415 324 86 58 chr3 192693266 192693671 -34830907 + L2 LINE L2 2666 3083 -189 21 0 0 0 chr3 192693712 192693733 -34830845 + AT_rich Low_complexity Low_complexity 1 21 0 2120 124 3 0 chr3 192695616 192695906 -34828672 + AluSp SINE Alu 1 291 -22 210 125 0 0 chr3 192696526 192696558 -34828020 - L2 LINE L2 -11 3302 3271 21 0 0 0 chr3 192696696 192696717 -34827861 + AT_rich Low_complexity Low_complexity 1 21 0 2228 96 0 10 chr3 192696720 192697012 -34827566 - AluSg SINE Alu -21 289 1 2171 109 0 13 chr3 192697240 192697542 -34827036 - AluSq SINE Alu -15 298 1 290 346 30 15 chr3 192697773 192697906 -34826672 + L2 LINE L2 1785 1919 -1395 941 245 15 30 chr3 192697938 192698203 -34826375 + MIR SINE MIR 2 262 0 5725 116 13 26 chr3 192698264 192699142 -34825436 + L1PA15 LINE L1 4917 5765 -400 2485 67 0 6 chr3 192699142 192699455 -34825123 + AluY SINE Alu 1 311 0 5725 116 13 26 chr3 192699455 192699851 -34824727 + L1PA15 LINE L1 5765 6165 0 496 341 139 32 chr3 192699866 192700801 -34823777 + L2 LINE L2 2233 3267 -5 2234 121 0 0 chr3 192701255 192701562 -34823016 - AluSx SINE Alu -1 311 5 234 186 43 14 chr3 192702621 192702691 -34821887 + L1P LINE L1 5318 5389 -742 326 229 139 51 chr3 192702788 192703120 -34821458 + L1ME4a LINE L1 5721 6081 -40 21 0 0 0 chr3 192703675 192703696 -34820882 + AT_rich Low_complexity Low_complexity 1 21 0 750 316 79 38 chr3 192705643 192706261 -34818317 - L2 LINE L2 -101 3212 2570 331 278 97 14 chr3 192708031 192708175 -34816403 - MER117 DNA MER1_type -33 164 9 41 36 0 0 chr3 192709180 192709235 -34815343 + AT_rich Low_complexity Low_complexity 1 55 0 21 0 0 0 chr3 192709621 192709642 -34814936 + AT_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 192711671 192711693 -34812885 + AT_rich Low_complexity Low_complexity 1 22 0 741 304 123 15 chr3 192714190 192714516 -34810062 + L3 LINE CR1 1018 1378 -199 625 378 86 20 chr3 192715116 192715929 -34808649 + L2 LINE L2 2389 3272 0 24 32 0 0 chr3 192716118 192716149 -34808429 + AT_rich Low_complexity Low_complexity 1 31 0 2101 147 0 0 chr3 192716245 192716590 -34807988 + AluSx SINE Alu 1 345 0 579 66 0 0 chr3 192716590 192716666 -34807912 + (GGAAA)n Simple_repeat Simple_repeat 4 79 0 436 252 19 10 chr3 192716678 192716781 -34807797 - L2 LINE L2 -18 3295 3192 500 294 127 59 chr3 192717667 192718140 -34806438 - L2 LINE L2 0 3313 2809 38 22 0 0 chr3 192718152 192718197 -34806381 + AT_rich Low_complexity Low_complexity 1 45 0 736 330 15 26 chr3 192718204 192718468 -34806110 + LTR16A LTR ERVL 178 438 -12 1493 260 98 37 chr3 192718656 192719164 -34805414 + MLT1F LTR MaLR 1 539 -3 1730 316 77 20 chr3 192719170 192719696 -34804882 + HERV16 LTR ERVL 184 679 -4317 2833 180 24 15 chr3 192719696 192720240 -34804338 - MER44D DNA MER2_type 0 605 2 1730 316 77 20 chr3 192720240 192720832 -34803746 + HERV16 LTR ERVL 679 1425 -3571 921 333 61 21 chr3 192720973 192721351 -34803227 + HERV16 LTR ERVL 2396 2788 -2208 1155 151 45 16 chr3 192721420 192721665 -34802913 + L1MA9 LINE L1 6058 6309 -3 1124 332 77 39 chr3 192721687 192722814 -34801764 + HERVL LTR ERVL 4045 5260 -504 1850 162 7 10 chr3 192723032 192723341 -34801237 - AluJo SINE Alu -3 309 2 844 302 108 7 chr3 192723416 192723694 -34800884 + LTR16A LTR ERVL 142 447 -3 440 299 43 32 chr3 192723734 192723921 -34800657 - MIR SINE MIR -49 213 25 925 310 63 52 chr3 192725805 192726263 -34798315 + MER115 DNA AcHobo 230 692 -1 274 322 126 40 chr3 192726539 192726855 -34797723 + L2 LINE L2 2686 3022 -250 216 355 57 7 chr3 192727163 192727304 -34797274 - L2 LINE L2 -567 2747 2600 545 192 105 83 chr3 192727670 192727983 -34796595 + HAL1 LINE L1 2040 2359 -148 29 28 0 0 chr3 192728040 192728076 -34796502 + AT_rich Low_complexity Low_complexity 1 36 0 2370 248 85 26 chr3 192728188 192729002 -34795576 - L1ME3A LINE L1 -43 6127 5266 216 331 40 57 chr3 192729293 192729417 -34795161 - MER91C DNA MER1_type -16 124 3 320 249 149 90 chr3 192729853 192730154 -34794424 + L1MC4a LINE L1 5260 5578 -2230 394 236 106 89 chr3 192730195 192730441 -34794137 + L1MC4a LINE L1 5688 5937 -1871 819 122 15 15 chr3 192730638 192730769 -34793809 + AluSg/x SINE Alu 172 302 -8 402 302 63 13 chr3 192730873 192731032 -34793546 - MIR SINE MIR -88 174 8 725 318 8 30 chr3 192731561 192731828 -34792750 + MIR SINE MIR 2 262 0 355 326 104 26 chr3 192731935 192732128 -34792450 + L2 LINE L2 2883 3090 -223 523 268 27 22 chr3 192732374 192732557 -34792021 - MER113 DNA MER1_type? -85 436 253 265 286 19 29 chr3 192732557 192732662 -34791916 - MLT1I LTR MaLR 0 409 306 2422 83 3 0 chr3 192732862 192733164 -34791414 + AluSp SINE Alu 1 303 -10 1301 197 19 16 chr3 192733288 192733625 -34790953 + MER47B DNA MER2_type 20 418 0 316 208 73 0 chr3 192733625 192733714 -34790864 - MER113 DNA MER1_type? -266 255 160 256 304 38 13 chr3 192733857 192733936 -34790642 - MIR SINE MIR -108 100 20 2017 126 27 0 chr3 192734049 192734233 -34790345 - AluSp SINE Alu -1 312 116 227 30 0 30 chr3 192734233 192734266 -34790312 + (TTTTA)n Simple_repeat Simple_repeat 1 32 0 2017 126 27 0 chr3 192734266 192734375 -34790203 - AluSp SINE Alu -197 116 11 23 0 0 0 chr3 192734497 192734520 -34790058 + AT_rich Low_complexity Low_complexity 1 23 0 198 103 0 0 chr3 192734887 192734916 -34789662 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 285 331 63 66 chr3 192736677 192737024 -34787554 - L2 LINE L2 0 3313 2968 204 355 45 18 chr3 192737154 192737264 -34787314 - L2 LINE L2 -465 2849 2737 245 300 78 0 chr3 192737380 192737470 -34787108 + LTR33A LTR ERVL 61 157 -366 272 288 9 36 chr3 192737619 192737730 -34786848 + LTR33A LTR ERVL 395 502 -21 3486 147 87 26 chr3 192738587 192738831 -34785747 - L1MB2 LINE L1 -11 6160 5932 2127 140 0 0 chr3 192738831 192739139 -34785439 - AluSx SINE Alu -2 310 3 3486 147 87 26 chr3 192739139 192739575 -34785003 - L1MB2 LINE L1 -239 5932 5439 21 0 0 0 chr3 192739920 192739941 -34784637 + AT_rich Low_complexity Low_complexity 1 21 0 2182 34 49 4 chr3 192740262 192740529 -34784049 - AluY SINE Alu -32 279 1 320 331 102 6 chr3 192740585 192740751 -34783827 + MIR SINE MIR 23 204 -58 1160 169 22 0 chr3 192740930 192741161 -34783417 + L1MA8 LINE L1 6053 6288 -3 1988 124 0 13 chr3 192741164 192741504 -34783074 + AluSx SINE Alu 1 336 0 335 284 80 57 chr3 192741775 192741951 -34782627 - MIR SINE MIR -82 180 1 1629 160 29 14 chr3 192742145 192742426 -34782152 - AluJb SINE Alu -27 285 1 313 321 83 42 chr3 192745543 192745711 -34778867 - MIR3 SINE MIR -19 189 15 339 357 36 9 chr3 192746323 192746435 -34778143 - L2 LINE L2 -4 3268 3154 536 263 43 46 chr3 192746552 192746772 -34777806 + MIR SINE MIR 19 227 -35 195 255 64 0 chr3 192747044 192747091 -34777487 + L2 LINE L2 3221 3270 -2 1712 196 0 10 chr3 192747418 192747730 -34776848 + AluJb SINE Alu 1 309 -3 297 240 40 0 chr3 192748540 192748632 -34775946 + MIR SINE MIR 34 130 -78 24 0 0 0 chr3 192751276 192751300 -34773278 + AT_rich Low_complexity Low_complexity 1 24 0 208 139 0 0 chr3 192751720 192751756 -34772822 + (CA)n Simple_repeat Simple_repeat 1 36 0 232 181 43 11 chr3 192752486 192752580 -34771998 + (TA)n Simple_repeat Simple_repeat 1 97 0 579 274 112 31 chr3 192752731 192752954 -34771624 + MIR SINE MIR 15 255 -7 24 0 0 0 chr3 192753603 192753627 -34770951 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 192756141 192756169 -34768409 + AT_rich Low_complexity Low_complexity 1 28 0 2291 97 3 0 chr3 192756377 192756676 -34767902 - AluSx SINE Alu -12 300 1 281 320 66 41 chr3 192757623 192757745 -34766833 + MIR SINE MIR 21 145 -117 534 174 0 114 chr3 192757790 192757939 -34766639 + FLAM_A SINE Alu 2 133 0 3108 197 36 6 chr3 192758144 192758788 -34765790 - L1MC4a LINE L1 0 7808 7146 645 225 0 0 chr3 192758805 192758934 -34765644 - FLAM_C SINE Alu -4 129 1 595 180 181 0 chr3 192758934 192759112 -34765466 - L1MC3 LINE L1 -4 7991 7619 484 229 49 0 chr3 192759102 192759224 -34765354 - L1MD3 LINE L1 -786 7209 7082 * 207 185 19 56 chr3 192759862 192759916 -34764662 - L2 LINE L2 0 3313 3262 2094 136 7 0 chr3 192760196 192760505 -34764073 - AluSx SINE Alu -1 311 1 21 0 0 0 chr3 192760689 192760710 -34763868 + AT_rich Low_complexity Low_complexity 1 21 0 209 291 18 0 chr3 192760710 192760765 -34763813 - MIR SINE MIR -3 259 204 52 50 0 0 chr3 192760881 192760961 -34763617 + AT_rich Low_complexity Low_complexity 1 80 0 22 56 0 0 chr3 192761979 192762015 -34762563 + AT_rich Low_complexity Low_complexity 1 36 0 846 135 0 32 chr3 192763247 192763373 -34761205 - FLAM_C SINE Alu -19 124 3 21 0 0 0 chr3 192765722 192765743 -34758835 + AT_rich Low_complexity Low_complexity 1 21 0 1015 111 0 0 chr3 192766412 192766556 -34758022 - L1MA2 LINE L1 -5 6299 6156 2177 97 7 10 chr3 192769524 192769822 -34754756 - AluSq SINE Alu -16 297 1 192 340 30 10 chr3 192770083 192770183 -34754395 - MIR SINE MIR -70 192 91 26 0 0 0 chr3 192770397 192770423 -34754155 + AT_rich Low_complexity Low_complexity 1 26 0 226 303 152 10 chr3 192771216 192771315 -34753263 - MIR3 SINE MIR -10 198 86 21 0 0 0 chr3 192771948 192771969 -34752609 + AT_rich Low_complexity Low_complexity 1 21 0 236 156 52 13 chr3 192773485 192773562 -34751016 + (TA)n Simple_repeat Simple_repeat 2 81 0 21 0 0 0 chr3 192778197 192778218 -34746360 + AT_rich Low_complexity Low_complexity 1 21 0 465 171 45 0 chr3 192781900 192781988 -34742590 - LTR48B LTR ERV1 -75 569 478 261 151 0 0 chr3 192783359 192783412 -34741166 + (TGGA)n Simple_repeat Simple_repeat 2 54 0 207 0 0 0 chr3 192783410 192783433 -34741145 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 21 36 0 0 chr3 192783436 192783464 -34741114 + AT_rich Low_complexity Low_complexity 1 28 0 2112 215 125 90 chr3 192783754 192784893 -34739685 + L1MC5 LINE L1 6728 7906 -55 223 342 48 37 chr3 192788449 192788636 -34735942 - MIR SINE MIR -25 237 49 523 329 53 17 chr3 192789839 192790067 -34734511 + MIR SINE MIR 20 251 -11 23 0 0 0 chr3 192790305 192790328 -34734250 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 192790556 192790577 -34734001 + GC_rich Low_complexity Low_complexity 1 21 0 186 263 182 81 chr3 192790613 192790822 -34733756 + L3 LINE CR1 1334 1563 -14 1887 156 10 7 chr3 192792850 192793158 -34731420 - AluJb SINE Alu -3 309 1 264 59 0 0 chr3 192793211 192793245 -34731333 + (CA)n Simple_repeat Simple_repeat 2 35 0 21 36 0 0 chr3 192793403 192793431 -34731147 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 192793876 192793899 -34730679 + AT_rich Low_complexity Low_complexity 1 23 0 26 0 0 0 chr3 192796159 192796185 -34728393 + AT_rich Low_complexity Low_complexity 1 26 0 33 25 0 0 chr3 192796518 192796558 -34728020 + AT_rich Low_complexity Low_complexity 1 40 0 183 161 0 0 chr3 192802538 192802569 -34722009 + L2 LINE L2 3272 3302 -11 22 0 0 0 chr3 192804612 192804634 -34719944 + AT_rich Low_complexity Low_complexity 1 22 0 423 0 0 0 chr3 192805253 192805300 -34719278 + (CA)n Simple_repeat Simple_repeat 2 48 0 240 111 0 0 chr3 192805634 192805670 -34718908 + (A)n Simple_repeat Simple_repeat 1 36 0 30 0 0 0 chr3 192806971 192807001 -34717577 + AT_rich Low_complexity Low_complexity 1 30 0 326 107 18 0 chr3 192807820 192807876 -34716702 + (TG)n Simple_repeat Simple_repeat 1 57 0 22 0 0 0 chr3 192808125 192808147 -34716431 + AT_rich Low_complexity Low_complexity 1 22 0 195 42 0 0 chr3 192809183 192809207 -34715371 + (T)n Simple_repeat Simple_repeat 1 24 0 194 174 22 0 chr3 192809888 192809934 -34714644 + (CAT)n Simple_repeat Simple_repeat 1 47 0 405 90 0 0 chr3 192810028 192810045 -34714533 + (TG)n Simple_repeat Simple_repeat 1 84 0 405 90 0 0 chr3 192810045 192810112 -34714466 + (TG)n Simple_repeat Simple_repeat 2 68 0 22 56 0 0 chr3 192812114 192812150 -34712428 + AT_rich Low_complexity Low_complexity 1 36 0 35 0 0 0 chr3 192812337 192812372 -34712206 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr3 192812400 192812435 -34712143 + AT_rich Low_complexity Low_complexity 1 35 0 23 68 0 0 chr3 192813234 192813278 -34711300 + AT_rich Low_complexity Low_complexity 1 44 0 25 0 0 0 chr3 192813645 192813670 -34710908 + AT_rich Low_complexity Low_complexity 1 25 0 213 211 78 0 chr3 192813790 192813871 -34710707 + MIR SINE MIR 39 129 -79 443 274 47 0 chr3 192814427 192814533 -34710045 + L2 LINE L2 3153 3263 -9 205 352 0 0 chr3 192814783 192814874 -34709704 + MIR SINE MIR 172 262 0 315 311 49 49 chr3 192819312 192819387 -34705191 + MIR SINE MIR 70 144 -118 1958 124 17 13 chr3 192819387 192819686 -34704892 + AluSg SINE Alu 1 300 -10 315 311 49 49 chr3 192819686 192819774 -34704804 + MIR SINE MIR 143 233 -29 803 281 32 0 chr3 192819839 192820088 -34704490 + MIR SINE MIR 3 259 -3 382 22 0 0 chr3 192820538 192820583 -34703995 + L1MA3 LINE L1 6060 6104 -201 279 215 41 25 chr3 192820614 192820735 -34703843 + (TTATA)n Simple_repeat Simple_repeat 1 123 0 1223 112 0 5 chr3 192820745 192820942 -34703636 + L1MA3 LINE L1 6110 6305 0 193 427 40 8 chr3 192821163 192821287 -34703291 - L2 LINE L2 -4 3268 3141 590 280 12 24 chr3 192821714 192821882 -34702696 + MLT1F LTR MaLR 1 166 -401 186 43 0 0 chr3 192821890 192821913 -34702665 + (TC)n Simple_repeat Simple_repeat 2 24 0 944 231 121 28 chr3 192821919 192822209 -34702369 + MLT1F LTR MaLR 217 533 -9 186 43 0 0 chr3 192823134 192823157 -34701421 + (TAA)n Simple_repeat Simple_repeat 2 24 0 206 325 25 33 chr3 192823436 192823556 -34701022 - L2 LINE L2 -603 2711 2593 539 268 119 45 chr3 192823579 192823822 -34700756 - MIR SINE MIR -1 261 1 21 0 0 0 chr3 192824185 192824206 -34700372 + AT_rich Low_complexity Low_complexity 1 21 0 2106 148 22 25 chr3 192824208 192824573 -34700005 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr3 192826547 192826571 -34698007 + AT_rich Low_complexity Low_complexity 1 24 0 963 210 0 17 chr3 192827125 192827301 -34697277 - AluJb SINE Alu -54 258 86 297 118 0 0 chr3 192827856 192827907 -34696671 + (CA)n Simple_repeat Simple_repeat 2 52 0 622 181 121 0 chr3 192828303 192828442 -34696136 - FLAM_C SINE Alu 0 153 1 2397 64 20 0 chr3 192830240 192830536 -34694042 + AluSc SINE Alu 3 304 -5 195 237 0 0 chr3 192831528 192831566 -34693012 + L2 LINE L2 3262 3299 -14 25 51 0 0 chr3 192831695 192831734 -34692844 + AT_rich Low_complexity Low_complexity 1 39 0 330 26 0 0 chr3 192832511 192832550 -34692028 + (TG)n Simple_repeat Simple_repeat 2 40 0 310 318 15 45 chr3 192832888 192833020 -34691558 + MIR SINE MIR 64 191 -71 21 0 0 0 chr3 192833083 192833104 -34691474 + AT_rich Low_complexity Low_complexity 1 21 0 345 323 24 0 chr3 192833250 192833374 -34691204 + L2 LINE L2 1963 2089 -1225 236 156 52 13 chr3 192834506 192834583 -34689995 + (TA)n Simple_repeat Simple_repeat 2 81 0 21 0 0 0 chr3 192839218 192839239 -34685339 + AT_rich Low_complexity Low_complexity 1 21 0 465 171 45 0 chr3 192842920 192843008 -34681570 - LTR48B LTR ERV1 -75 569 478 261 151 0 0 chr3 192844380 192844433 -34680145 + (TGGA)n Simple_repeat Simple_repeat 2 54 0 207 0 0 0 chr3 192844431 192844454 -34680124 + (TG)n Simple_repeat Simple_repeat 2 24 0 * 21 36 0 0 chr3 192844457 192844485 -34680093 + AT_rich Low_complexity Low_complexity 1 28 0 2036 215 125 90 chr3 192844775 192845914 -34678664 + L1MC5 LINE L1 6728 7906 -55 329 224 120 72 chr3 192847977 192847997 -34676581 + L1MC4a LINE L1 5806 5824 -1984 2664 42 0 3 chr3 192847997 192848306 -34676272 + AluY SINE Alu 1 308 -3 329 224 120 72 chr3 192848306 192848410 -34676168 + L1MC4a LINE L1 5824 5936 -1872 23 0 0 0 chr3 192848413 192848436 -34676142 + AT_rich Low_complexity Low_complexity 1 23 0 318 258 174 6 chr3 192848442 192848609 -34675969 + L1MC5 LINE L1 7485 7679 -282 26 0 0 0 chr3 192848863 192848889 -34675689 + AT_rich Low_complexity Low_complexity 1 26 0 261 0 0 0 chr3 192849312 192849341 -34675237 + (T)n Simple_repeat Simple_repeat 1 29 0 23 54 0 0 chr3 192850255 192850292 -34674286 + AT_rich Low_complexity Low_complexity 1 37 0 2133 108 0 10 chr3 192850434 192850730 -34673848 + AluSq SINE Alu 1 293 -20 798 145 99 29 chr3 192850776 192850948 -34673630 - MER5A DNA MER1_type -5 184 1 623 182 88 40 chr3 192851163 192851227 -34673351 + MER5B DNA MER1_type 21 81 -97 1100 217 94 60 chr3 192851227 192851610 -34672968 - MSTD LTR MaLR 0 396 1 623 182 88 40 chr3 192851610 192851693 -34672885 + MER5B DNA MER1_type 81 175 -3 754 210 155 0 chr3 192852058 192852239 -34672339 + MER3 DNA MER1_type 1 209 0 739 244 56 5 chr3 192852391 192852604 -34671974 - MER58A DNA MER1_type 0 224 1 1010 312 91 31 chr3 192855098 192855822 -34668756 + L2 LINE L2 2534 3313 0 280 283 29 43 chr3 192855831 192855969 -34668609 + Charlie7 DNA MER1_type 2129 2264 -348 2082 104 32 0 chr3 192855986 192856264 -34668314 + AluSx SINE Alu 1 287 -25 992 179 0 6 chr3 192857506 192857668 -34666910 - AluJb SINE Alu -15 297 137 377 277 112 38 chr3 192859270 192859470 -34665108 + MIR SINE MIR 42 262 0 180 0 0 0 chr3 192859690 192859710 -34664868 + (T)n Simple_repeat Simple_repeat 1 20 0 221 290 114 8 chr3 192860608 192860739 -34663839 - MIR SINE MIR -60 202 58 4582 180 6 21 chr3 192860819 192861866 -34662712 - L1MB1 LINE L1 0 6168 5136 2619 188 19 83 chr3 192861878 192862633 -34661945 - L1MB1 LINE L1 -1322 4824 4119 402 240 16 33 chr3 192863168 192863289 -34661289 + MER5C DNA MER1_type 2 120 -204 287 233 0 58 chr3 192863321 192863407 -34661171 + MER5C DNA MER1_type 244 324 0 216 97 0 0 chr3 192863500 192863531 -34661047 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 25 0 0 0 chr3 192863802 192863827 -34660751 + AT_rich Low_complexity Low_complexity 1 25 0 310 256 90 0 chr3 192863898 192863976 -34660602 - L2 LINE L2 -3 3269 3185 260 208 52 13 chr3 192865365 192865442 -34659136 + HsTC2 DNA Tc2 7 86 -1812 227 260 0 0 chr3 192865427 192865477 -34659101 + HsTC2 DNA Tc2 1849 1898 0 * 654 289 37 11 chr3 192865477 192865667 -34658911 - MIR SINE MIR -67 195 1 278 265 194 18 chr3 192865904 192866074 -34658504 - L1ME LINE L1 -303 5818 5619 331 257 197 26 chr3 192867524 192867579 -34656999 + MER5A DNA MER1_type 12 56 -133 14482 139 23 2 chr3 192867579 192869947 -34654631 + Tigger1 DNA MER2_type 1 2418 0 331 257 197 26 chr3 192869947 192870043 -34654535 + MER5A DNA MER1_type 56 189 0 30 0 0 0 chr3 192870628 192870658 -34653920 + AT_rich Low_complexity Low_complexity 1 30 0 189 218 18 36 chr3 192870744 192870799 -34653779 + MIR SINE MIR 92 145 -63 1292 258 43 3 chr3 192871816 192872165 -34652413 - MER63C DNA MER1_type -1 929 567 343 212 189 32 chr3 192873011 192873219 -34651359 - MER33 DNA MER1_type -41 322 23 22 80 0 0 chr3 192873504 192873554 -34651024 + AT_rich Low_complexity Low_complexity 1 50 0 22 88 0 0 chr3 192874086 192874143 -34650435 + AT_rich Low_complexity Low_complexity 1 57 0 1119 255 58 22 chr3 192874774 192875485 -34649093 + L1MDb LINE L1 775 2246 -4160 347 292 0 0 chr3 192875492 192875581 -34648997 - L1MC4 LINE L1 -1339 6703 6615 309 183 0 0 chr3 192875584 192875644 -34648934 + (CATATA)n Simple_repeat Simple_repeat 2 61 0 1098 274 88 12 chr3 192875711 192876214 -34648364 + L1MDb LINE L1 3675 4215 -2191 1288 48 12 0 chr3 192876256 192876424 -34648154 + L1PA6 LINE L1 5979 6148 -6 180 111 0 0 chr3 192876427 192876454 -34648124 + (TATG)n Simple_repeat Simple_repeat 2 28 0 29 0 0 0 chr3 192876457 192876486 -34648092 + AT_rich Low_complexity Low_complexity 1 29 0 302 232 37 0 chr3 192876790 192876853 -34647725 + (CATA)n Simple_repeat Simple_repeat 3 71 -16 252 86 0 0 chr3 192876853 192876888 -34647690 + (TG)n Simple_repeat Simple_repeat 2 36 0 302 232 37 0 chr3 192876888 192876906 -34647672 + (CATA)n Simple_repeat Simple_repeat 71 87 0 766 253 51 100 chr3 192877026 192877720 -34646858 + L1MC5 LINE L1 6554 7219 -742 560 257 91 25 chr3 192877853 192878094 -34646484 + L1MC5 LINE L1 7253 7509 -452 2458 161 41 2 chr3 192878126 192878561 -34646017 + L1P LINE L1 11 462 -5684 590 299 18 27 chr3 192878740 192878964 -34645614 + MER58A DNA MER1_type 2 223 -1 * 833 226 116 71 chr3 192878964 192879568 -34645010 - MER63C DNA MER1_type -404 526 63 1290 198 41 16 chr3 192879572 192879600 -34644978 - MLT2D LTR ERVL -8 389 363 327 25 0 0 chr3 192879600 192879640 -34644938 + (TG)n Simple_repeat Simple_repeat 2 41 0 1290 198 41 16 chr3 192879640 192879969 -34644609 - MLT2D LTR ERVL -34 363 1 21 36 0 0 chr3 192881378 192881406 -34643172 + AT_rich Low_complexity Low_complexity 1 28 0 212 341 181 15 chr3 192882368 192882573 -34642005 - L2 LINE L2 -1367 1947 1709 1569 202 93 32 chr3 192883585 192884025 -34640553 - MLT1C LTR MaLR 0 467 1 1562 70 0 0 chr3 192884209 192884396 -34640182 + AluSq SINE Alu 1 187 -126 33121 73 11 5 chr3 192884512 192889037 -34635541 + L1P LINE L1 486 5036 -1110 1093 174 32 108 chr3 192889144 192889460 -34635118 - L1MA9 LINE L1 -119 6193 5902 310 254 174 22 chr3 192889834 192889972 -34634606 - MIR SINE MIR -56 206 48 21 0 0 0 chr3 192890732 192890753 -34633825 + AT_rich Low_complexity Low_complexity 1 21 0 284 306 99 0 chr3 192890770 192890881 -34633697 + HAL1 LINE L1 19 140 -2367 502 277 71 68 chr3 192891196 192891564 -34633014 + HAL1 LINE L1 532 900 -1607 1082 38 0 0 chr3 192891634 192891767 -34632811 + AluY SINE Alu 171 303 -8 310 305 45 30 chr3 192891782 192891982 -34632596 + HAL1 LINE L1 967 1169 -1338 1842 138 4 4 chr3 192891984 192892259 -34632319 + AluSx SINE Alu 4 278 -34 883 275 121 67 chr3 192892591 192893395 -34631183 + HAL1 LINE L1 1654 2500 -7 207 232 0 0 chr3 192893397 192893453 -34631125 + (CA)n Simple_repeat Simple_repeat 1 56 0 2224 101 0 0 chr3 192895634 192895931 -34628647 - AluSc SINE Alu -12 297 1 989 221 5 0 chr3 192896258 192896457 -34628121 + MER58A DNA MER1_type 14 213 -11 270 304 88 40 chr3 192897094 192897219 -34627359 + MIR SINE MIR 65 195 -67 300 257 230 18 chr3 192897329 192897442 -34627136 + MER5A DNA MER1_type 52 188 -1 1097 222 9 0 chr3 192898332 192898548 -34626030 - MLT1A1 LTR MaLR -9 356 139 221 321 92 15 chr3 192898697 192898828 -34625750 + MIR SINE MIR 57 197 -65 22 0 0 0 chr3 192899434 192899456 -34625122 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 192899635 192899657 -34624921 + AT_rich Low_complexity Low_complexity 1 22 0 259 231 15 0 chr3 192900108 192900173 -34624405 - MLT1E1 LTR MaLR -1 653 588 918 258 29 4 chr3 192900173 192900417 -34624161 + L1MC1 LINE L1 3625 3874 -2272 509 169 20 123 chr3 192900408 192900603 -34623975 + L1MC1 LINE L1 4904 5078 -1068 * 523 202 61 9 chr3 192900613 192900727 -34623851 - MIR SINE MIR -65 143 24 936 159 47 57 chr3 192900971 192901253 -34623325 + L1MC1 LINE L1 5225 5502 -743 36 0 0 0 chr3 192901774 192901810 -34622768 + AT_rich Low_complexity Low_complexity 1 36 0 3091 167 4 74 chr3 192901850 192902569 -34622009 + L1MC1 LINE L1 5649 6317 -16 1826 193 78 87 chr3 192902607 192903156 -34621422 - MLT1E1 LTR MaLR -100 554 11 4918 201 73 71 chr3 192903174 192904861 -34619717 - L1MB5 LINE L1 -10 6164 4366 502 279 0 0 chr3 192904861 192904972 -34619606 + FLAM_A SINE Alu 1 111 -31 4918 201 73 71 chr3 192904972 192905867 -34618711 - L1MB5 LINE L1 -1808 4366 3474 216 329 35 12 chr3 192908880 192908965 -34615613 + MIR SINE MIR 42 128 -80 315 217 14 0 chr3 192909008 192909077 -34615501 - MIR SINE MIR -109 153 84 260 235 24 35 chr3 192910411 192910496 -34614082 + CT-rich Low_complexity Low_complexity 2 85 0 1619 80 0 5 chr3 192910567 192910779 -34613799 - AluY SINE Alu -100 211 1 2221 88 0 3 chr3 192910788 192911073 -34613505 - AluSc SINE Alu -25 284 1 592 98 19 2 chr3 192911102 192911198 -34613380 + LTR17 LTR ERV1 247 360 -354 1682 129 35 47 chr3 192911663 192912004 -34612574 + MER1B DNA MER1_type 1 337 0 23 0 0 0 chr3 192912708 192912731 -34611847 + AT_rich Low_complexity Low_complexity 1 23 0 362 327 18 9 chr3 192912795 192912905 -34611673 + MIR SINE MIR 17 127 -135 280 0 182 0 chr3 192912909 192912953 -34611625 - MADE1 DNA Mariner -1 79 28 284 308 19 28 chr3 192912954 192913061 -34611517 + MIR SINE MIR 141 246 -16 209 211 53 0 chr3 192913212 192913269 -34611309 + (CATATA)n Simple_repeat Simple_repeat 3 62 0 23 54 0 0 chr3 192914724 192914761 -34609817 + AT_rich Low_complexity Low_complexity 1 37 0 236 339 105 29 chr3 192916228 192916399 -34608179 + L3 LINE CR1 1393 1576 -1 411 250 31 62 chr3 192916655 192916783 -34607795 - L2 LINE L2 0 3313 3190 469 250 34 96 chr3 192916805 192917013 -34607565 + MLT1D LTR MaLR 3 197 -308 1116 210 68 21 chr3 192918059 192918340 -34606238 - MER58B DNA MER1_type 0 341 48 243 265 254 6 chr3 192918771 192918952 -34605626 - MLT1H LTR MaLR -19 530 305 438 234 135 65 chr3 192918970 192919111 -34605467 - MLT1H LTR MaLR -326 204 81 2212 127 0 0 chr3 192919111 192919403 -34605175 + AluSc SINE Alu 1 292 -17 438 234 135 65 chr3 192919403 192919486 -34605092 - MLT1H LTR MaLR -449 81 5 458 271 110 7 chr3 192920234 192920389 -34604189 - MER104 DNA Tc2 0 180 10 225 315 37 28 chr3 192920445 192920553 -34604025 - MIR SINE MIR -50 212 104 23 33 0 0 chr3 192920553 192920583 -34603995 + AT_rich Low_complexity Low_complexity 1 30 0 534 336 38 35 chr3 192921058 192921427 -34603151 - MLT1I LTR MaLR -2 407 38 537 306 40 30 chr3 192922639 192922940 -34601638 - L1MC4a LINE L1 -1892 5916 5613 294 217 0 0 chr3 192923416 192923485 -34601093 + (TA)n Simple_repeat Simple_repeat 2 70 0 31 108 0 0 chr3 192923493 192923622 -34600956 + AT_rich Low_complexity Low_complexity 1 129 0 261 274 96 14 chr3 192923702 192923775 -34600803 - MLT1I LTR MaLR -105 304 226 214 238 8 127 chr3 192925619 192925745 -34598833 - MIR SINE MIR -44 218 108 203 161 0 0 chr3 192926534 192926565 -34598013 + A-rich Low_complexity Low_complexity 4 34 0 207 161 0 0 chr3 192926920 192926951 -34597627 + polypyrimidine Low_complexity Low_complexity 6 36 0 237 91 0 0 chr3 192929149 192929182 -34595396 - MER3 DNA MER1_type -161 48 16 2557 178 28 46 chr3 192929247 192929814 -34594764 - L1MB1 LINE L1 -1 6167 5611 1678 179 51 2 chr3 192929809 192930238 -34594340 + L1 LINE L1 3119 3568 -2578 * 23 33 0 0 chr3 192930884 192930914 -34593664 + AT_rich Low_complexity Low_complexity 1 30 0 222 37 0 0 chr3 192931024 192931051 -34593527 + (T)n Simple_repeat Simple_repeat 1 27 0 1372 179 13 4 chr3 192931232 192931467 -34593111 - AluJo SINE Alu -75 237 1 309 208 30 10 chr3 192931467 192931568 -34593010 - Charlie2 DNA MER1_type -88 2774 2672 1109 326 50 40 chr3 192931626 192932690 -34591888 + L1MEc LINE L1 55 1129 -5267 1132 227 53 13 chr3 192932714 192933018 -34591560 + L1ME3 LINE L1 5504 5819 -347 192 77 0 0 chr3 192933520 192933546 -34591032 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 305 326 68 15 chr3 192935079 192935211 -34589367 + MIR SINE MIR 53 191 -71 746 232 68 12 chr3 192935261 192935511 -34589067 + L1ME3 LINE L1 5896 6159 -3 607 232 129 0 chr3 192935855 192936010 -34588568 + MER45A DNA AcHobo 3 177 -1 281 290 0 0 chr3 192936140 192936202 -34588376 + L2 LINE L2 3246 3307 -6 1296 283 139 29 chr3 192937605 192938166 -34586412 + L2 LINE L2 2039 2661 -653 235 303 32 32 chr3 192938454 192938609 -34585969 + L2 LINE L2 3011 3165 -148 331 102 0 0 chr3 192938672 192938721 -34585857 + MLT2A2 LTR ERVL 1 49 -404 365 194 28 0 chr3 192938722 192938794 -34585784 + L2 LINE L2 3209 3282 -31 1187 148 16 0 chr3 192939402 192939591 -34584987 + AluSc SINE Alu 104 295 -14 1908 179 16 25 chr3 192939784 192940152 -34584426 + MLT1A1 LTR MaLR 1 365 0 603 288 61 5 chr3 192941610 192941808 -34582770 - MER58A DNA MER1_type -13 211 3 453 253 213 13 chr3 192945302 192945452 -34579126 - MER5A DNA MER1_type -6 183 4 278 314 137 11 chr3 192945838 192946013 -34578565 + MIR SINE MIR 54 250 -12 292 248 93 31 chr3 192946325 192946454 -34578124 + MLT1L LTR MaLR 475 611 -4 210 278 0 0 chr3 192947335 192947389 -34577189 + (TA)n Simple_repeat Simple_repeat 2 55 0 225 94 0 0 chr3 192948389 192948421 -34576157 + (TG)n Simple_repeat Simple_repeat 2 33 0 1592 144 123 41 chr3 192949687 192950027 -34574551 + THE1C LTR MaLR 8 375 0 285 292 0 0 chr3 192950721 192950797 -34573781 + C-rich Low_complexity Low_complexity 1 76 0 2026 225 48 13 chr3 192951421 192951896 -34572682 + MLT1D LTR MaLR 12 503 -2 338 264 23 11 chr3 192951902 192951989 -34572589 + L2 LINE L2 3224 3311 -2 374 274 61 37 chr3 192952917 192953081 -34571497 + L1M4 LINE L1 3181 3348 -2798 399 293 223 27 chr3 192953221 192953818 -34570760 + L1M4 LINE L1 3370 4083 -2063 253 244 73 41 chr3 192953831 192953954 -34570624 + L1M1 LINE L1 5316 5442 -860 837 204 13 44 chr3 192953978 192954203 -34570375 + AluJb SINE Alu 1 218 -94 253 213 0 33 chr3 192954613 192954674 -34569904 - Charlie1 DNA MER1_type 0 2761 2703 3294 183 38 18 chr3 192954684 192955351 -34569227 + L1PBa LINE L1 4 683 -6180 1252 116 85 5 chr3 192955600 192955799 -34568779 - AluSg/x SINE Alu -16 294 80 1884 140 0 7 chr3 192955892 192956177 -34568401 + AluJb SINE Alu 1 283 -29 22 0 0 0 chr3 192956411 192956433 -34568145 + AT_rich Low_complexity Low_complexity 1 22 0 1226 89 0 11 chr3 192956666 192956845 -34567733 + L1PA5 LINE L1 5975 6151 -3 503 240 55 31 chr3 192956845 192957099 -34567479 + L1MC5 LINE L1 7511 7770 -191 31 26 0 0 chr3 192957275 192957313 -34567265 + AT_rich Low_complexity Low_complexity 1 38 0 236 306 0 0 chr3 192958093 192958155 -34566423 - MER5A DNA MER1_type 0 189 128 1249 190 31 19 chr3 192958158 192958416 -34566162 + AluJo SINE Alu 45 305 -7 397 185 0 4 chr3 192958421 192958492 -34566086 - MER5A DNA MER1_type -82 99 38 10454 63 9 1 chr3 192959622 192961010 -34563568 + L1P LINE L1 838 2236 -3910 389 139 139 0 chr3 192961226 192961305 -34563273 + MER21B LTR ERV1 1 90 -773 866 201 0 50 chr3 192961306 192961485 -34563093 - AluJb SINE Alu -24 288 119 701 82 8 25 chr3 192961518 192961640 -34562938 + (TTC)n Simple_repeat Simple_repeat 2 121 0 787 152 8 0 chr3 192961647 192961779 -34562799 - FLAM_C SINE Alu -2 141 9 1814 184 205 12 chr3 192961788 192962266 -34562312 + MER21B LTR ERV1 85 714 -217 376 60 0 0 chr3 192962487 192962537 -34562041 - MADE1 DNA Mariner -30 50 1 2625 139 201 3 chr3 192962540 192963117 -34561461 + L1MCa LINE L1 1234 1924 -4502 6063 107 28 2 chr3 192963749 192964749 -34559829 - L1P LINE L1 -2206 3940 2915 39 84 0 0 chr3 192964932 192965027 -34559551 + AT_rich Low_complexity Low_complexity 1 95 0 1209 198 95 28 chr3 192965056 192965339 -34559239 + AluJb SINE Alu 1 302 0 703 250 68 54 chr3 192965359 192965481 -34559097 + L2 LINE L2 3014 3133 -180 2166 126 0 0 chr3 192965481 192965783 -34558795 - AluSx SINE Alu -7 305 4 703 250 68 54 chr3 192965783 192965956 -34558622 + L2 LINE L2 3133 3313 0 600 347 58 0 chr3 192966013 192966255 -34558323 + MIR SINE MIR 5 260 -2 863 156 96 6 chr3 192967005 192967172 -34557406 - MER3 DNA MER1_type -27 182 1 287 274 0 0 chr3 192968012 192968074 -34556504 + MIR3 SINE MIR 108 169 -39 2864 47 0 19 chr3 192968145 192968510 -34556068 - L1PA5 LINE L1 -2 6152 5795 2046 110 0 0 chr3 192970650 192970922 -34553656 - AluSg SINE Alu -38 272 1 216 296 174 10 chr3 192971548 192971646 -34552932 - MIR SINE MIR -97 165 52 194 242 97 32 chr3 192972017 192972079 -34552499 + MIR SINE MIR 79 144 -64 200 297 0 0 chr3 192973804 192973868 -34550710 + T-rich Low_complexity Low_complexity 1 64 0 269 115 0 19 chr3 192974416 192974468 -34550110 + (TG)n Simple_repeat Simple_repeat 2 52 0 198 0 0 0 chr3 192974562 192974584 -34549994 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2417 75 0 0 chr3 192975139 192975447 -34549131 - AluY SINE Alu -3 308 1 303 194 59 12 chr3 192976129 192976299 -34548279 + (TA)n Simple_repeat Simple_repeat 1 178 0 23 33 0 0 chr3 192976561 192976591 -34547987 + AT_rich Low_complexity Low_complexity 1 30 0 2439 68 3 0 chr3 192977218 192977514 -34547064 - AluY SINE Alu -14 297 1 293 287 63 21 chr3 192977544 192977687 -34546891 - L1ME3A LINE L1 -31 6139 5991 327 298 21 0 chr3 192980182 192980276 -34544302 + L1MC4 LINE L1 6608 6703 -1339 231 204 0 0 chr3 192980277 192980326 -34544252 + (TATATG)n Simple_repeat Simple_repeat 6 54 0 331 311 0 0 chr3 192980330 192980420 -34544158 + L1MC4 LINE L1 6614 6703 -1339 317 315 0 0 chr3 192980429 192980518 -34544060 + L1MC4 LINE L1 6615 6703 -1339 300 238 125 0 chr3 192980528 192980608 -34543970 + L1MC4 LINE L1 6614 6703 -1339 * 305 333 0 0 chr3 192980580 192980670 -34543908 - L1MC4 LINE L1 -1339 6703 6614 * 313 271 71 0 chr3 192980655 192980740 -34543838 + L1MC4 LINE L1 6615 6705 -1337 346 289 51 47 chr3 192985302 192985515 -34539063 + MIR SINE MIR 16 224 -38 307 273 155 72 chr3 192986318 192986582 -34537996 - L2 LINE L2 -1 3312 3027 2593 64 0 0 chr3 192986636 192986947 -34537631 + AluY SINE Alu 1 311 0 23 0 0 0 chr3 192987322 192987345 -34537233 + AT_rich Low_complexity Low_complexity 1 23 0 537 40 0 0 chr3 192987346 192987420 -34537158 - L1PB1 LINE L1 -1 6150 6077 1970 184 149 31 chr3 192987432 192987882 -34536696 - MLT1D LTR MaLR 0 505 3 186 280 54 54 chr3 192990423 192990516 -34534062 - MER5B DNA MER1_type -26 152 60 255 196 0 0 chr3 192990516 192990567 -34534011 + L1MC4 LINE L1 6652 6702 -1340 187 229 0 46 chr3 192990581 192990690 -34533888 + (TA)n Simple_repeat Simple_repeat 1 104 0 189 0 0 0 chr3 192990641 192990662 -34533916 + (TG)n Simple_repeat Simple_repeat 2 22 0 24 85 0 0 chr3 192990789 192990848 -34533730 + AT_rich Low_complexity Low_complexity 1 59 0 354 308 63 28 chr3 192990906 192991049 -34533529 - MIR3 SINE MIR -49 159 12 188 311 61 61 chr3 192991256 192991388 -34533190 + L2 LINE L2 3168 3299 -14 231 255 0 0 chr3 192991396 192991447 -34533131 + GA-rich Low_complexity Low_complexity 4 54 0 250 353 0 12 chr3 192991538 192991623 -34532955 - L2 LINE L2 -1 3312 3229 1901 123 11 11 chr3 192991633 192991918 -34532660 + AluSq SINE Alu 1 285 -28 23 0 0 0 chr3 192993187 192993210 -34531368 + AT_rich Low_complexity Low_complexity 1 23 0 673 278 71 5 chr3 192993511 192993709 -34530869 - MIR SINE MIR -3 259 49 21 0 0 0 chr3 192993966 192993987 -34530591 + AT_rich Low_complexity Low_complexity 1 21 0 1889 108 11 0 chr3 192996801 192997069 -34527509 - AluSq SINE Alu -1 312 42 2096 98 4 0 chr3 192997084 192997386 -34527192 - AluSp SINE Alu 0 319 17 248 181 12 36 chr3 192999605 192999688 -34524890 + (CAAA)n Simple_repeat Simple_repeat 2 82 0 21 71 0 0 chr3 193000605 193000647 -34523931 + AT_rich Low_complexity Low_complexity 1 42 0 631 325 69 20 chr3 193000859 193001308 -34523270 + L1MC4a LINE L1 5427 5897 -1911 2119 114 0 10 chr3 193004398 193004695 -34519883 - AluSc SINE Alu -15 294 1 702 246 25 61 chr3 193004731 193005120 -34519458 + L2 LINE L2 2707 3179 -134 12713 191 26 17 chr3 193005292 193006443 -34518135 + L1MA4 LINE L1 2409 3548 -2752 2196 117 0 0 chr3 193006443 193006752 -34517826 + AluSx SINE Alu 1 309 0 12713 191 26 17 chr3 193006752 193007592 -34516986 + L1MA4 LINE L1 3548 4379 -1921 2394 66 0 0 chr3 193007592 193007879 -34516699 + AluY SINE Alu 1 287 -24 1838 89 0 4 chr3 193007879 193008139 -34516439 + AluY SINE Alu 50 309 0 12713 191 26 17 chr3 193008139 193009978 -34514600 + L1MA4 LINE L1 4378 6288 -12 2715 155 19 21 chr3 193010017 193010494 -34514084 + MER44D DNA MER2_type 75 605 0 452 122 12 0 chr3 193011435 193011517 -34513061 + L1 LINE L1 4583 4665 -1481 212 158 26 0 chr3 193011519 193011557 -34513021 + GA-rich Low_complexity Low_complexity 3 41 0 297 276 32 76 chr3 193011771 193011956 -34512622 + Charlie8 DNA MER1_type 100 276 -2141 820 212 33 11 chr3 193012439 193012623 -34511955 - MER5A DNA MER1_type 0 189 2 353 176 14 0 chr3 193013952 193014026 -34510552 + GA-rich Low_complexity Low_complexity 2 76 0 998 128 6 0 chr3 193014041 193014213 -34510365 + (GGA)n Simple_repeat Simple_repeat 3 175 0 647 205 0 12 chr3 193014218 193014379 -34510199 + GA-rich Low_complexity Low_complexity 2 160 0 858 171 20 0 chr3 193014401 193014704 -34509874 + GA-rich Low_complexity Low_complexity 1 309 0 277 251 6 12 chr3 193014780 193014943 -34509635 + GA-rich Low_complexity Low_complexity 2 163 0 250 221 15 15 chr3 193014995 193015063 -34509515 + GA-rich Low_complexity Low_complexity 2 69 0 2066 81 0 127 chr3 193015343 193015689 -34508889 + AluSc SINE Alu 3 304 -5 362 303 21 14 chr3 193015835 193015980 -34508598 - Charlie8 DNA MER1_type -2216 201 56 443 317 37 6 chr3 193016080 193016244 -34508334 - MIR SINE MIR -59 203 35 180 340 19 0 chr3 193016381 193016434 -34508144 - MIR SINE MIR -160 102 49 324 0 0 0 chr3 193017212 193017248 -34507330 + (CA)n Simple_repeat Simple_repeat 2 37 0 22 35 0 0 chr3 193017339 193017368 -34507210 + AT_rich Low_complexity Low_complexity 1 29 0 238 263 153 29 chr3 193017374 193017511 -34507067 + L2 LINE L2 3160 3313 0 224 32 95 16 chr3 193017629 193017692 -34506886 + (TA)n Simple_repeat Simple_repeat 1 68 0 357 294 152 28 chr3 193017848 193018270 -34506308 - L1MC4a LINE L1 -1952 6250 5777 1662 217 3 0 chr3 193018348 193018652 -34505926 + AluJo SINE Alu 3 307 -5 212 147 0 0 chr3 193018701 193018735 -34505843 + (GAAAA)n Simple_repeat Simple_repeat 2 35 0 1399 265 137 10 chr3 193019179 193019850 -34504728 - L1MC4a LINE L1 -2091 4449 3694 1765 146 50 53 chr3 193019851 193020227 -34504351 + THE1C LTR MaLR 1 375 0 4964 208 27 2 chr3 193020231 193021209 -34503369 + THE1C-int LTR MaLR 5 1006 -645 6267 210 71 100 chr3 193021209 193023465 -34501113 - L1MC4a LINE L1 -4158 2382 199 180 0 0 0 chr3 193023465 193023485 -34501093 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 6267 210 71 100 chr3 193023485 193023650 -34500928 - L1MC4a LINE L1 -6341 199 31 448 280 28 68 chr3 193023980 193024230 -34500348 - HAL1b LINE L1 -477 871 632 360 224 93 50 chr3 193024300 193024461 -34500117 - HAL1b LINE L1 -812 536 369 266 250 0 0 chr3 193024616 193024680 -34499898 + T-rich Low_complexity Low_complexity 1 64 0 269 115 0 19 chr3 193025228 193025280 -34499298 + (TG)n Simple_repeat Simple_repeat 2 52 0 198 0 0 0 chr3 193025374 193025396 -34499182 + (TTTTG)n Simple_repeat Simple_repeat 2 23 0 2417 75 0 0 chr3 193025951 193026259 -34498319 - AluY SINE Alu -3 308 1 303 194 59 12 chr3 193026941 193027111 -34497467 + (TA)n Simple_repeat Simple_repeat 1 178 0 23 33 0 0 chr3 193027373 193027403 -34497175 + AT_rich Low_complexity Low_complexity 1 30 0 2444 68 3 0 chr3 193028030 193028326 -34496252 - AluY SINE Alu -14 297 1 9231 210 36 18 chr3 193028327 193029166 -34495412 - L1 LINE L1 -1700 4628 3805 2195 117 0 0 chr3 193029166 193029475 -34495103 - AluSx SINE Alu 0 309 1 9231 210 36 18 chr3 193029475 193033035 -34491543 - L1 LINE L1 -2523 3805 125 1739 173 0 3 chr3 193033035 193033319 -34491259 - AluJb SINE Alu -29 283 1 9231 210 36 18 chr3 193033319 193033434 -34491144 - L1 LINE L1 -6203 125 14 471 241 0 0 chr3 193033441 193033524 -34491054 - Tigger7 DNA MER2_type -622 83 1 564 172 0 0 chr3 193033709 193033802 -34490776 - L1M3f LINE L1 -4864 464 372 598 173 65 72 chr3 193034636 193034775 -34489803 - L1M3f LINE L1 -4946 382 245 256 396 0 9 chr3 193035199 193035305 -34489273 + MER5A DNA MER1_type 35 139 -50 339 325 58 22 chr3 193036514 193036825 -34487753 - L1ME2 LINE L1 -280 5884 5563 702 253 30 76 chr3 193036976 193037473 -34487105 - L2 LINE L2 -35 3278 2707 2119 114 0 10 chr3 193037509 193037806 -34486772 + AluSc SINE Alu 1 294 -15 622 319 72 20 chr3 193040898 193041343 -34483235 - L1MC4a LINE L1 -1914 5894 5427 21 71 0 0 chr3 193041555 193041597 -34482981 + AT_rich Low_complexity Low_complexity 1 42 0 257 172 35 35 chr3 193042515 193042602 -34481976 + T-rich Low_complexity Low_complexity 6 92 0 2081 113 3 7 chr3 193044820 193045112 -34479466 + AluSx SINE Alu 17 307 -5 4150 114 48 1 chr3 193045115 193045801 -34478777 + L1PBa LINE L1 1976 2693 -4170 263 105 0 0 chr3 193045801 193045839 -34478739 + Alu SINE Alu 1 38 -262 27 0 0 0 chr3 193046366 193046393 -34478185 + AT_rich Low_complexity Low_complexity 1 27 0 354 327 92 32 chr3 193047415 193047632 -34476946 - L2 LINE L2 0 3313 3084 283 326 112 58 chr3 193047827 193048069 -34476509 - MIR SINE MIR 0 262 8 198 0 0 0 chr3 193048391 193048413 -34476165 + (TTCTC)n Simple_repeat Simple_repeat 4 25 0 2463 58 3 0 chr3 193048416 193048707 -34475871 - AluY SINE Alu -19 292 1 1089 156 124 16 chr3 193048722 193048979 -34475599 + LTR12 LTR ERV1 1 285 -429 311 153 0 42 chr3 193048983 193049055 -34475523 + LTR30 LTR ERV1 556 624 -98 568 230 26 0 chr3 193049055 193049168 -34475410 + LTR12 LTR ERV1 362 477 -237 517 225 54 0 chr3 193049168 193049279 -34475299 - MLT1A2 LTR MaLR -256 118 2 458 196 12 55 chr3 193049805 193049968 -34474610 - L1ME4a LINE L1 -12 6109 5954 596 339 16 12 chr3 193050106 193050348 -34474230 - MIR SINE MIR 0 262 20 22 0 0 0 chr3 193051726 193051748 -34472830 + AT_rich Low_complexity Low_complexity 1 22 0 512 304 68 14 chr3 193051752 193051972 -34472606 + MIR SINE MIR 5 236 -26 718 279 46 50 chr3 193052411 193052673 -34471905 + MIR SINE MIR 2 262 0 2510 82 12 0 chr3 193053039 193053381 -34471197 + L1PA8 LINE L1 5813 6158 -14 24 53 0 0 chr3 193053381 193053419 -34471159 + AT_rich Low_complexity Low_complexity 1 38 0 183 309 202 21 chr3 193053425 193053519 -34471059 - L2 LINE L2 -10 3303 3193 27 49 0 0 chr3 193053789 193053830 -34470748 + AT_rich Low_complexity Low_complexity 1 41 0 2510 82 12 0 chr3 193053830 193054172 -34470406 - L1PA8 LINE L1 -14 6158 5813 592 321 19 9 chr3 193054366 193054578 -34470000 - MIR SINE MIR 0 262 49 2244 95 0 41 chr3 193054655 193054971 -34469607 - AluY SINE Alu -8 303 1 24 32 0 0 chr3 193055848 193055879 -34468699 + AT_rich Low_complexity Low_complexity 1 31 0 1162 196 35 39 chr3 193056042 193056353 -34468225 - L1M4 LINE L1 -2399 3747 3438 509 270 149 25 chr3 193056788 193057110 -34467468 + L2 LINE L2 2927 3288 -25 893 158 6 0 chr3 193057819 193057996 -34466582 + GA-rich Low_complexity Low_complexity 3 180 0 912 178 14 3 chr3 193058009 193058645 -34465933 + GA-rich Low_complexity Low_complexity 1 643 0 520 208 6 11 chr3 193058659 193058837 -34465741 + GA-rich Low_complexity Low_complexity 2 178 0 921 141 16 8 chr3 193058851 193059115 -34465463 + GA-rich Low_complexity Low_complexity 1 266 0 598 269 18 42 chr3 193059802 193059969 -34464609 - MIR SINE MIR -88 174 12 438 311 72 29 chr3 193060700 193061006 -34463572 - L1M4 LINE L1 -1165 4981 4663 1165 224 94 74 chr3 193061092 193061689 -34462889 - L1M4 LINE L1 -1614 4532 3924 283 212 24 0 chr3 193062482 193062567 -34462011 + (CATATA)n Simple_repeat Simple_repeat 2 88 0 2312 115 0 0 chr3 193062744 193063057 -34461521 - AluSq SINE Alu 0 313 1 989 207 5 5 chr3 193063240 193063438 -34461140 + MLT1H LTR MaLR 8 205 -344 379 263 122 56 chr3 193063410 193063623 -34460955 + MLT1H LTR MaLR 313 539 -10 * 242 347 41 20 chr3 193064811 193064909 -34459669 - MIR SINE MIR -79 183 84 22 35 0 0 chr3 193065646 193065675 -34458903 + AT_rich Low_complexity Low_complexity 1 29 0 36 77 0 0 chr3 193066088 193066166 -34458412 + AT_rich Low_complexity Low_complexity 1 78 0 284 236 0 0 chr3 193066987 193067042 -34457536 - HsTC2 DNA Tc2 -1816 82 28 2057 115 14 0 chr3 193067278 193067566 -34457012 - AluSc SINE Alu -17 292 1 354 353 8 0 chr3 193068135 193068257 -34456321 - Charlie8 DNA MER1_type -2152 265 143 559 290 54 27 chr3 193068746 193068932 -34455646 + MIR SINE MIR 3 193 -69 532 309 69 18 chr3 193069177 193069394 -34455184 - MIR SINE MIR -27 235 8 242 389 30 15 chr3 193070144 193070275 -34454303 + L2 LINE L2 2911 3043 -229 2049 113 94 60 chr3 193070275 193070647 -34453931 + LTR7 LTR ERV1 1 393 -57 1963 116 25 0 chr3 193070647 193070953 -34453625 + AluY SINE Alu 1 313 0 2049 113 94 60 chr3 193070953 193071014 -34453564 + LTR7 LTR ERV1 393 450 0 23 54 0 0 chr3 193071070 193071107 -34453471 + AT_rich Low_complexity Low_complexity 1 37 0 3662 124 2 13 chr3 193071195 193071725 -34452853 - MER1A DNA MER1_type -2 525 2 2215 110 0 3 chr3 193072450 193072751 -34451827 - AluSx SINE Alu -12 300 1 504 310 47 18 chr3 193073223 193073394 -34451184 + MIR SINE MIR 71 246 -16 24 0 0 0 chr3 193073464 193073488 -34451090 + AT_rich Low_complexity Low_complexity 1 24 0 2029 89 86 0 chr3 193073542 193073822 -34450756 - AluSx SINE Alu -8 304 1 258 156 0 0 chr3 193075308 193075353 -34449225 + T-rich Low_complexity Low_complexity 1 45 0 657 195 90 40 chr3 193075798 193075998 -34448580 - MER63A DNA MER1_type 0 210 1 415 222 135 34 chr3 193076493 193076700 -34447878 - L1ME4a LINE L1 0 6121 5894 456 216 37 56 chr3 193076719 193076881 -34447697 - L1ME4a LINE L1 -265 5856 5698 908 253 113 56 chr3 193078605 193079122 -34445456 + MLT1H LTR MaLR 1 595 0 351 0 0 0 chr3 193079455 193079494 -34445084 + (TG)n Simple_repeat Simple_repeat 1 39 0 368 294 163 11 chr3 193080185 193080369 -34444209 - MIR SINE MIR -42 220 9 327 49 0 0 chr3 193080640 193080681 -34443897 + (T)n Simple_repeat Simple_repeat 1 41 0 338 299 123 63 chr3 193081875 193082209 -34442369 - L2 LINE L2 0 3313 2960 286 268 63 47 chr3 193082660 193082787 -34441791 + MIR SINE MIR 97 225 -37 1764 193 133 7 chr3 193084219 193084634 -34439944 + MLT1C LTR MaLR 1 467 0 1697 204 40 8 chr3 193085391 193085743 -34438835 + MLT1A1 LTR MaLR 3 365 0 309 272 134 36 chr3 193086613 193086837 -34437741 + L2 LINE L2 2685 2930 -384 204 324 0 15 chr3 193087481 193087549 -34437029 + CT-rich Low_complexity Low_complexity 2 68 0 845 145 0 0 chr3 193089618 193089742 -34434836 - FLAM_C SINE Alu -19 124 1 23 54 0 0 chr3 193090072 193090109 -34434469 + AT_rich Low_complexity Low_complexity 1 37 0 188 39 59 59 chr3 193090127 193090178 -34434400 + T-rich Low_complexity Low_complexity 4 54 0 1019 244 47 45 chr3 193092165 193092566 -34432012 - L1ME3 LINE L1 -17 6145 5744 2441 39 0 3 chr3 193094720 193095038 -34429540 + AluY SINE Alu 1 317 0 21 71 0 0 chr3 193095688 193095730 -34428848 + AT_rich Low_complexity Low_complexity 1 42 0 383 277 112 38 chr3 193096200 193096400 -34428178 - MIR SINE MIR 0 262 42 975 179 0 6 chr3 193098003 193098165 -34426413 + AluJb SINE Alu 137 297 -15 1610 190 29 0 chr3 193099407 193099686 -34424892 - AluJo SINE Alu -25 287 1 231 306 0 14 chr3 193099933 193100005 -34424573 + GA-rich Low_complexity Low_complexity 3 73 0 194 351 13 0 chr3 193102745 193102822 -34421756 - MIR3 SINE MIR -33 175 98 283 293 49 0 chr3 193102937 193103019 -34421559 - MIR SINE MIR -129 133 48 1805 169 3 13 chr3 193103058 193103371 -34421207 + AluJb SINE Alu 1 310 -2 217 240 52 73 chr3 193103488 193103584 -34420994 + MIR3 SINE MIR 64 157 -51 1798 243 78 34 chr3 193103720 193104284 -34420294 + L1ME1 LINE L1 5551 6139 -27 1281 319 117 46 chr3 193104356 193105317 -34419261 + L2 LINE L2 1947 2975 -339 541 302 5 54 chr3 193105293 193105498 -34419080 + L2 LINE L2 3105 3299 -14 * 264 316 8 68 chr3 193105498 193105631 -34418947 + Charlie8 DNA MER1_type 140 264 -2153 180 286 82 20 chr3 193106172 193106270 -34418308 + MIR SINE MIR 112 215 -47 2518 68 0 0 chr3 193106391 193106702 -34417876 + AluY SINE Alu 1 311 0 234 0 0 0 chr3 193106708 193106734 -34417844 + (TA)n Simple_repeat Simple_repeat 1 26 0 21 0 0 0 chr3 193107425 193107446 -34417132 + AT_rich Low_complexity Low_complexity 1 21 0 293 323 116 30 chr3 193107593 193107791 -34416787 - L2 LINE L2 -864 2450 2236 546 324 63 25 chr3 193107899 193108137 -34416441 + L2 LINE L2 2729 2975 -339 318 259 0 72 chr3 193108113 193108252 -34416326 + L2 LINE L2 3105 3233 -80 * 845 321 179 31 chr3 193108251 193108995 -34415583 - L2 LINE L2 -1325 1989 1136 382 252 70 35 chr3 193109768 193109883 -34414695 + MIR3 SINE MIR 38 156 -52 250 196 22 87 chr3 193110945 193111037 -34413541 - L2 LINE L2 -14 3299 3214 2403 152 44 4 chr3 193112167 193112621 -34411957 - L1MA4 LINE L1 0 6300 5829 4059 170 35 10 chr3 193112622 193113893 -34410685 + L1MA4 LINE L1 4504 5817 -483 5184 230 45 30 chr3 193114680 193115091 -34409487 - L1M4 LINE L1 -1551 4595 4192 1834 180 0 0 chr3 193115091 193115397 -34409181 - AluJb SINE Alu -6 306 1 5184 230 45 30 chr3 193115397 193116682 -34407896 - L1M4 LINE L1 -1954 4192 2872 7528 212 50 19 chr3 193116707 193116781 -34407797 - L1MC1 LINE L1 -17 6596 6526 210 71 0 0 chr3 193116781 193116809 -34407769 + (CATA)n Simple_repeat Simple_repeat 1 28 0 7528 212 50 19 chr3 193116809 193119584 -34404994 - L1MC1 LINE L1 -87 6526 3625 2098 97 24 0 chr3 193119584 193119753 -34404825 - AluY SINE Alu -12 299 119 351 0 0 0 chr3 193119753 193119792 -34404786 + (TG)n Simple_repeat Simple_repeat 2 40 0 2098 97 24 0 chr3 193119792 193119912 -34404666 - AluY SINE Alu -192 119 3 7528 212 50 19 chr3 193119912 193120331 -34404247 - L1MC1 LINE L1 -2988 3625 3221 3424 155 55 10 chr3 193120357 193121441 -34403137 - L1MC1 LINE L1 -3982 2444 1163 2281 195 42 76 chr3 193121446 193122035 -34402543 - LTR9 LTR ERV1 0 612 44 2928 83 17 15 chr3 193122035 193122442 -34402136 + MLT2A2 LTR ERVL 1 408 -45 307 237 79 0 chr3 193122445 193122521 -34402057 - L1MC4 LINE L1 -1347 6695 6614 326 111 19 0 chr3 193122524 193122578 -34402000 + MLT2A2 LTR ERVL 399 453 0 794 114 0 0 chr3 193122637 193122751 -34401827 - L1MCa LINE L1 -5261 1165 1052 1313 120 24 5 chr3 193122751 193122960 -34401618 - pTR5 LTR ERV1 -2054 384 172 294 267 10 0 chr3 193122963 193123064 -34401514 - LTR30 LTR ERV1 -80 642 541 4962 107 65 78 chr3 193123065 193124190 -34400388 - pTR5 LTR ERV1 -417 2021 743 4355 196 59 20 chr3 193124190 193125176 -34399402 - L1MC1 LINE L1 -5363 1063 40 854 298 88 30 chr3 193125216 193125749 -34398829 - L1MC4 LINE L1 -1920 5888 5325 367 328 138 25 chr3 193125933 193126259 -34398319 - L1MC4 LINE L1 -1098 5048 4686 5730 92 3 0 chr3 193126716 193127478 -34397100 - THE1B-int LTR MaLR -816 764 1 2166 118 49 29 chr3 193127478 193127825 -34396753 - THE1B LTR MaLR 0 364 11 3756 216 84 77 chr3 193127830 193129259 -34395319 + L1 LINE L1 2329 3772 -2374 276 56 0 56 chr3 193129259 193129313 -34395265 + (TA)n Simple_repeat Simple_repeat 1 51 0 3756 216 84 77 chr3 193129313 193129577 -34395001 + L1 LINE L1 3772 4033 -2113 1773 170 30 21 chr3 193129577 193129912 -34394666 + MER2 DNA MER2_type 1 338 -7 23 33 0 0 chr3 193130377 193130407 -34394171 + GC_rich Low_complexity Low_complexity 1 30 0 209 273 0 0 chr3 193130460 193130504 -34394074 + G-rich Low_complexity Low_complexity 1 44 0 33 25 0 0 chr3 193131345 193131385 -34393193 + AT_rich Low_complexity Low_complexity 1 40 0 455 273 56 6 chr3 193131413 193131574 -34393004 + L1M4 LINE L1 5493 5661 -460 229 213 33 0 chr3 193131615 193131676 -34392902 + L1M4 LINE L1 5743 5805 -373 22 35 0 0 chr3 193131768 193131797 -34392781 + AT_rich Low_complexity Low_complexity 1 29 0 440 286 72 53 chr3 193131851 193132113 -34392465 + L1 LINE L1 5137 5403 -743 1982 51 8 16 chr3 193132555 193132811 -34391767 - AluY SINE Alu 0 311 58 28 0 0 0 chr3 193133067 193133095 -34391483 + AT_rich Low_complexity Low_complexity 1 28 0 255 326 47 12 chr3 193134371 193134457 -34390121 + L2 LINE L2 3137 3225 -47 668 234 108 6 chr3 193134479 193134637 -34389941 + MER45A DNA AcHobo 3 176 -2 345 316 65 55 chr3 193135348 193135655 -34388923 + L1ME4a LINE L1 4741 5050 -1096 703 120 0 0 chr3 193135774 193135882 -34388696 + L1MA2 LINE L1 6197 6304 0 2108 112 10 0 chr3 193136047 193136341 -34388237 - AluSc SINE Alu -12 297 1 834 298 77 28 chr3 193136361 193136790 -34387788 + LTR16A LTR ERVL 1 450 0 732 346 107 10 chr3 193137018 193137411 -34387167 + LTR16A LTR ERVL 20 450 0 272 232 145 0 chr3 193137445 193137514 -34387064 + Tigger5 DNA MER2_type 1 79 -2244 371 182 0 52 chr3 193137516 193137593 -34386985 - Tigger5 DNA MER2_type -6 2317 2245 432 231 0 0 chr3 193137605 193137683 -34386895 + Tigger5 DNA MER2_type 2242 2319 -4 347 309 128 33 chr3 193137768 193138072 -34386506 + L1ME4a LINE L1 5523 5855 -266 1374 168 91 94 chr3 193138082 193138422 -34386156 - MER2 DNA MER2_type -1 344 6 844 317 36 25 chr3 193139278 193139638 -34384940 + MER93a LTR ERV1 4 367 -35 25 0 0 0 chr3 193139828 193139853 -34384725 + AT_rich Low_complexity Low_complexity 1 25 0 252 200 0 0 chr3 193139862 193139922 -34384656 + (CATA)n Simple_repeat Simple_repeat 1 60 0 14118 201 47 21 chr3 193139933 193145723 -34378855 - L1MA4 LINE L1 -5 6477 539 992 363 34 8 chr3 193146307 193146775 -34377803 - L1M3a LINE L1 -5475 480 1 22 0 0 0 chr3 193146902 193146924 -34377654 + AT_rich Low_complexity Low_complexity 1 22 0 329 259 9 0 chr3 193147525 193147632 -34376946 + HAL1b LINE L1 1232 1305 -43 199 339 0 0 chr3 193147793 193147849 -34376729 + MIR SINE MIR 38 93 -115 474 278 53 21 chr3 193147849 193148036 -34376542 + MIR SINE MIR 64 256 -6 720 285 5 14 chr3 193150353 193150560 -34374018 + MIR SINE MIR 58 262 0 302 296 20 10 chr3 193150564 193150662 -34373916 - MIR SINE MIR -155 107 9 307 239 80 0 chr3 193151202 193151290 -34373288 + MIR SINE MIR 104 198 -64 1942 163 13 26 chr3 193151734 193152114 -34372464 - THE1C LTR MaLR 0 375 1 2252 121 0 0 chr3 193152555 193152860 -34371718 - AluSg SINE Alu -5 305 1 1512 254 40 25 chr3 193153491 193153935 -34370643 + MER74C LTR ERVL 10 460 0 230 357 48 0 chr3 193153968 193154052 -34370526 - L2 LINE L2 -219 3053 2966 301 363 97 32 chr3 193154254 193154593 -34369985 - L2 LINE L2 -482 2832 2472 774 167 53 0 chr3 193154595 193154727 -34369851 - MSTC LTR MaLR -287 141 3 431 365 72 47 chr3 193154747 193155196 -34369382 - L2 LINE L2 -869 2445 1978 1637 179 120 11 chr3 193155196 193155553 -34369025 + MSTD LTR MaLR 1 396 0 431 365 72 47 chr3 193155553 193155662 -34368916 - L2 LINE L2 -1336 1978 1873 283 337 82 29 chr3 193155682 193155925 -34368653 - L2 LINE L2 -1667 1647 1392 1706 196 45 11 chr3 193156410 193156763 -34367815 - MLT1A1 LTR MaLR 0 365 1 271 308 211 0 chr3 193156895 193157051 -34367527 - MIR SINE MIR 0 262 74 5820 82 38 26 chr3 193157072 193157960 -34366618 + L1MA1 LINE L1 5404 6302 0 270 267 0 0 chr3 193158249 193158309 -34366269 - MIR SINE MIR -6 256 197 239 320 39 29 chr3 193158830 193158933 -34365645 - MIR SINE MIR -125 137 34 1507 151 12 4 chr3 193161404 193161656 -34362922 + AluSx SINE Alu 48 301 -11 252 295 42 11 chr3 193161747 193161842 -34362736 + MIR3 SINE MIR 101 198 -10 285 356 42 0 chr3 193162095 193162213 -34362365 - MIR3 SINE MIR -1 207 85 25 0 0 0 chr3 193162360 193162385 -34362193 + AT_rich Low_complexity Low_complexity 1 25 0 227 261 0 0 chr3 193163291 193163337 -34361241 + polypurine Low_complexity Low_complexity 1 46 0 180 0 0 0 chr3 193163522 193163542 -34361036 + (T)n Simple_repeat Simple_repeat 1 20 0 3633 127 30 2 chr3 193163554 193164128 -34360450 + L1PA16 LINE L1 5568 6157 -9 315 0 0 0 chr3 193164555 193164590 -34359988 + (TA)n Simple_repeat Simple_repeat 1 35 0 315 191 0 12 chr3 193165809 193165893 -34358685 - L1ME4a LINE L1 0 6121 6039 22 0 0 0 chr3 193166336 193166358 -34358220 + AT_rich Low_complexity Low_complexity 1 22 0 605 276 93 14 chr3 193168111 193168325 -34356253 - L3 LINE CR1 -640 937 707 2175 128 3 0 chr3 193168798 193169104 -34355474 - AluSx SINE Alu -5 307 1 351 0 0 0 chr3 193169175 193169214 -34355364 + (CA)n Simple_repeat Simple_repeat 1 39 0 301 231 0 51 chr3 193169259 193169337 -34355241 + MIR SINE MIR 82 150 -58 21 0 0 0 chr3 193169416 193169437 -34355141 + AT_rich Low_complexity Low_complexity 1 21 0 827 234 0 6 chr3 193169927 193170094 -34354484 - MER5B DNA MER1_type -5 173 8 443 223 198 8 chr3 193170117 193170238 -34354340 - MER5A DNA MER1_type -30 159 16 180 0 0 0 chr3 193171441 193171461 -34353117 + (TGAA)n Simple_repeat Simple_repeat 4 23 0 242 258 91 30 chr3 193172152 193172284 -34352294 + MLT1L LTR MaLR 476 615 0 354 322 244 14 chr3 193173000 193173426 -34351152 - L2 LINE L2 -448 2866 2343 207 100 0 0 chr3 193173499 193173529 -34351049 + (A)n Simple_repeat Simple_repeat 1 30 0 317 328 97 34 chr3 193173820 193174088 -34350490 + L2 LINE L2 2417 2701 -613 346 241 29 22 chr3 193174104 193174241 -34350337 + (CATATA)n Simple_repeat Simple_repeat 2 139 0 271 170 27 45 chr3 193174282 193174429 -34350149 + (TA)n Simple_repeat Simple_repeat 1 144 0 183 315 76 47 chr3 193174432 193174708 -34349870 - L2 LINE L2 -1431 1883 1600 1434 288 45 11 chr3 193174754 193175198 -34349380 + LTR40c LTR ERVL 1 459 -6 1875 147 3 22 chr3 193175246 193175559 -34349019 + AluSx SINE Alu 1 307 -5 279 390 0 0 chr3 193175913 193176008 -34348570 + L2 LINE L2 3149 3243 -29 723 294 26 86 chr3 193176444 193176480 -34348098 + MLT1K LTR MaLR 144 181 -407 7840 61 22 0 chr3 193176480 193177465 -34347113 + LTR13 LTR ERVK 1 1007 0 723 294 26 86 chr3 193177465 193177813 -34346765 + MLT1K LTR MaLR 181 505 -83 208 325 83 71 chr3 193178319 193178488 -34346090 - MIR SINE MIR -70 192 22 26 0 0 0 chr3 193179135 193179161 -34345417 + AT_rich Low_complexity Low_complexity 1 26 0 211 229 0 21 chr3 193179188 193179236 -34345342 + CT-rich Low_complexity Low_complexity 2 48 0 1502 266 39 15 chr3 193179604 193180071 -34344507 - L1ME LINE L1 -5522 739 262 233 272 99 39 chr3 193180117 193180317 -34344261 - L1ME LINE L1 -5852 218 8 25 0 0 0 chr3 193180436 193180461 -34344117 + AT_rich Low_complexity Low_complexity 1 25 0 2195 63 0 4 chr3 193180688 193180957 -34343621 - AluY SINE Alu -43 268 1 612 245 161 0 chr3 193181072 193181227 -34343351 - MER5A DNA MER1_type -1 188 9 545 284 51 17 chr3 193181243 193181419 -34343159 - MER5A DNA MER1_type -1 188 7 494 281 23 8 chr3 193181701 193181829 -34342749 - L3 LINE CR1 -18 1559 1430 1063 174 89 27 chr3 193183079 193183337 -34341241 - ORSL DNA AcHobo -1 274 1 1145 277 129 68 chr3 193183548 193184151 -34340427 + MER45C DNA AcHobo 1 640 -313 610 212 83 36 chr3 193184182 193184375 -34340203 + MER45C DNA AcHobo 725 926 -27 2265 108 0 0 chr3 193184422 193184718 -34339860 - AluSg SINE Alu -14 296 1 24 32 0 0 chr3 193186631 193186662 -34337916 + AT_rich Low_complexity Low_complexity 1 31 0 1146 181 62 0 chr3 193187004 193187214 -34337364 - MER46A DNA MER2_type -6 230 8 180 176 0 0 chr3 193187229 193187263 -34337315 + (TG)n Simple_repeat Simple_repeat 1 34 0 2034 146 0 7 chr3 193187727 193188035 -34336543 - AluSx SINE Alu -6 306 1 14639 129 32 17 chr3 193188117 193190494 -34334084 - Tigger1 DNA MER2_type -6 2412 1 1490 285 26 0 chr3 193191126 193191551 -34333027 + LTR16A LTR ERVL 15 450 0 5739 119 17 2 chr3 193192250 193193137 -34331441 - L1MA2 LINE L1 0 6304 5405 26 30 0 0 chr3 193193519 193193552 -34331026 + AT_rich Low_complexity Low_complexity 1 33 0 230 114 0 23 chr3 193194642 193194686 -34329892 + (TAGA)n Simple_repeat Simple_repeat 3 45 0 263 222 69 76 chr3 193194787 193194931 -34329647 - L1ME4a LINE L1 -9 6112 5970 246 62 0 0 chr3 193195951 193195983 -34328595 + (TC)n Simple_repeat Simple_repeat 1 32 0 355 310 45 19 chr3 193196296 193196451 -34328127 - MIR SINE MIR -86 176 18 201 121 0 0 chr3 193196688 193196721 -34327857 + (A)n Simple_repeat Simple_repeat 1 33 0 252 247 99 12 chr3 193196978 193197059 -34327519 - L2 LINE L2 -17 3255 3168 491 228 11 117 chr3 193197110 193197290 -34327288 - MER5A DNA MER1_type -1 188 28 397 248 142 21 chr3 193197288 193197429 -34327149 + MIR SINE MIR 99 256 -6 * 1589 111 93 65 chr3 193198108 193198387 -34326191 - AluSx SINE Alu -25 287 1 3181 108 10 8 chr3 193198826 193199317 -34325261 + L1PB1 LINE L1 5658 6149 -2 378 288 184 6 chr3 193199540 193199703 -34324875 - HAL1 LINE L1 -941 1566 1375 327 302 47 55 chr3 193199727 193199982 -34324596 - L1MEd LINE L1 -4887 1232 980 2263 81 7 26 chr3 193200176 193200531 -34324047 - AluSq SINE Alu 0 313 1 2045 208 44 11 chr3 193200867 193201318 -34323260 + MLT1C LTR MaLR 2 467 0 21 0 0 0 chr3 193201517 193201538 -34323040 + AT_rich Low_complexity Low_complexity 1 21 0 2194 118 3 3 chr3 193203481 193203794 -34320784 + AluSp SINE Alu 1 313 0 31 58 0 0 chr3 193204153 193204205 -34320373 + AT_rich Low_complexity Low_complexity 1 52 0 2607 191 19 58 chr3 193204265 193204902 -34319676 - LTR9 LTR ERV1 0 612 1 31 26 0 0 chr3 193205214 193205252 -34319326 + AT_rich Low_complexity Low_complexity 1 38 0 29 60 0 0 chr3 193205315 193205365 -34319213 + AT_rich Low_complexity Low_complexity 1 50 0 224 156 67 11 chr3 193207992 193208082 -34316496 + (TA)n Simple_repeat Simple_repeat 2 96 0 1849 158 7 3 chr3 193209504 193209814 -34314764 + AluJb SINE Alu 2 312 0 32 0 0 0 chr3 193209898 193209930 -34314648 + AT_rich Low_complexity Low_complexity 1 32 0 212 378 64 32 chr3 193210045 193210201 -34314377 - L2 LINE L2 0 3272 3112 204 207 0 138 chr3 193210796 193210824 -34313754 - MIR SINE MIR -69 193 163 2216 71 36 0 chr3 193210824 193211105 -34313473 + AluY SINE Alu 16 306 -5 204 207 0 138 chr3 193211105 193211163 -34313415 - MIR SINE MIR -99 163 119 213 231 0 0 chr3 193211591 193211643 -34312935 + (TAA)n Simple_repeat Simple_repeat 3 54 0 395 272 75 53 chr3 193212289 193212600 -34311978 - MLT1I LTR MaLR -17 392 98 890 279 113 3 chr3 193212702 193213021 -34311557 + LTR41 LTR ERVL 1 354 -419 895 261 90 67 chr3 193213159 193213681 -34310897 + LTR41 LTR ERVL 234 767 -6 21 36 0 0 chr3 193214304 193214332 -34310246 + AT_rich Low_complexity Low_complexity 1 28 0 1926 80 30 86 chr3 193214397 193214745 -34309833 - AluSq SINE Alu 0 331 1 466 363 39 6 chr3 193215321 193215500 -34309078 - MIR3 SINE MIR -8 200 16 9710 39 7 0 chr3 193216910 193218086 -34306492 - L1PA3 LINE L1 -901 5245 4059 7774 19 0 1 chr3 193218086 193218989 -34305589 + L1PA3 LINE L1 5254 6155 0 3313 244 102 68 chr3 193219306 193220105 -34304473 + L1MD1 LINE L1 2998 3768 -2378 276 56 0 56 chr3 193220105 193220159 -34304419 + (TA)n Simple_repeat Simple_repeat 2 52 0 3313 244 102 68 chr3 193220159 193220423 -34304155 + L1MD1 LINE L1 3768 4021 -2125 1809 185 18 9 chr3 193220423 193220764 -34303814 + MER2 DNA MER2_type 1 344 0 3313 244 102 68 chr3 193220764 193221681 -34302897 + L1MD1 LINE L1 4021 5048 -1098 2330 194 47 4 chr3 193221682 193222193 -34302385 + L1MD1 LINE L1 5703 6235 -7 41747 39 22 11 chr3 193222328 193222646 -34301932 + L1PA3 LINE L1 2 315 -5840 11023 36 5 0 chr3 193222646 193224776 -34299802 + L1PA2 LINE L1 4000 6155 0 41747 39 22 11 chr3 193224776 193230543 -34294035 + L1PA3 LINE L1 315 6155 0 230 198 70 35 chr3 193230561 193230647 -34293931 + L1MEc LINE L1 1314 1402 -4994 1948 164 13 4 chr3 193230650 193231193 -34293385 + L1P4 LINE L1 4833 5514 -651 1603 228 60 119 chr3 193231187 193232053 -34292525 + L1M3e LINE L1 1082 1896 -5134 * 259 252 90 18 chr3 193232256 193232367 -34292211 + MER39B LTR ERV1 47 165 -488 1967 128 48 15 chr3 193232400 193232735 -34291843 + MER39 LTR ERV1 341 686 -21 1028 186 145 9 chr3 193232735 193232956 -34291622 - AluSg SINE Alu -59 251 1 704 262 28 64 chr3 193233189 193233471 -34291107 + Charlie2 DNA MER1_type 37 308 -2554 2136 178 159 39 chr3 193233489 193234199 -34290379 + Charlie2 DNA MER1_type 1883 2677 -185 255 283 33 0 chr3 193234229 193234321 -34290257 + Charlie2 DNA MER1_type 2764 2858 -4 45 45 0 0 chr3 193234686 193234752 -34289826 + GC_rich Low_complexity Low_complexity 1 66 0 284 298 18 64 chr3 193234978 193235149 -34289429 + MLT1J LTR MaLR 304 466 -45 2048 124 3 0 chr3 193236378 193236693 -34287885 - AluSp SINE Alu 0 316 1 2255 81 3 69 chr3 193236716 193237049 -34287529 - AluY SINE Alu 0 311 1 199 380 62 16 chr3 193237792 193237921 -34286657 + MIR SINE MIR 30 164 -98 25 0 0 0 chr3 193237940 193237965 -34286613 + AT_rich Low_complexity Low_complexity 1 25 0 1691 190 40 18 chr3 193238280 193238680 -34285898 + L1MB8 LINE L1 5758 6166 -12 492 184 221 22 chr3 193238824 193238960 -34285618 + MER5A DNA MER1_type 14 176 -13 317 237 41 12 chr3 193239213 193239382 -34285196 + (TAAA)n Simple_repeat Simple_repeat 1 174 0 309 326 61 0 chr3 193244005 193244103 -34280475 + L2 LINE L2 3169 3272 0 1703 130 111 0 chr3 193244430 193244691 -34279887 + AluSx SINE Alu 13 302 -10 617 71 0 12 chr3 193245067 193245151 -34279427 - AluSg/x SINE Alu -9 300 218 794 239 175 22 chr3 193245152 193245430 -34279148 + MER57A LTR ERV1 113 403 0 291 216 129 35 chr3 193245685 193245801 -34278777 - LTR48B LTR ERV1 -283 361 235 225 160 20 180 chr3 193245880 193245980 -34278598 - MER34 LTR ERV1 -458 84 1 792 245 44 47 chr3 193245980 193246056 -34278522 + MER89-int LTR ERV1 1728 1803 -3320 2157 127 0 3 chr3 193246056 193246356 -34278222 - AluSx SINE Alu -11 301 3 792 245 44 47 chr3 193246356 193247200 -34277378 + MER89-int LTR ERV1 1803 2569 -2554 485 229 39 10 chr3 193247191 193247421 -34277157 + MER89-int LTR ERV1 2469 2746 -2190 * 802 231 150 36 chr3 193247546 193247879 -34276699 + MER93b LTR ERV1 3 373 0 3373 32 2 0 chr3 193248325 193248726 -34275852 - L1PA3 LINE L1 -5 6150 5749 1938 168 0 0 chr3 193248726 193249023 -34275555 - AluSx SINE Alu -15 297 1 301 323 8 15 chr3 193249439 193249569 -34275009 + MER89-int LTR ERV1 1250 1378 -5423 1766 178 0 0 chr3 193249867 193250153 -34274425 + AluJb SINE Alu 1 286 -26 434 49 16 0 chr3 193250170 193250231 -34274347 + (CA)n Simple_repeat Simple_repeat 2 63 0 554 315 65 60 chr3 193251344 193251726 -34272852 + MER89-int LTR ERV1 152 538 -4109 2276 86 0 7 chr3 193251726 193252028 -34272550 - AluY SINE Alu -11 300 1 554 315 65 60 chr3 193252028 193252077 -34272501 + MER89-int LTR ERV1 538 585 -4062 259 266 31 62 chr3 193252873 193253001 -34271577 + MER89-int LTR ERV1 3536 3659 -3142 180 300 20 0 chr3 193253024 193253074 -34271504 - L2 LINE L2 -2092 1222 1172 276 404 0 0 chr3 193253107 193253201 -34271377 + MER89-int LTR ERV1 3784 3877 -2924 1364 309 13 21 chr3 193253298 193253770 -34270808 + MER89-int LTR ERV1 5285 5752 -1785 7437 35 6 3 chr3 193253870 193255194 -34269384 - L1P2 LINE L1 -356 5799 4475 320 332 105 20 chr3 193255192 193255875 -34268703 - L1MEc LINE L1 -3974 2422 1682 * 2359 179 84 20 chr3 193255961 193256510 -34268068 - L1MC3 LINE L1 -32 7753 7170 242 138 92 46 chr3 193256514 193256579 -34267999 - MLT1F1 LTR MaLR -465 102 35 229 154 115 0 chr3 193256579 193256631 -34267947 - L1MC3 LINE L1 -688 7097 7040 356 267 64 60 chr3 193256729 193256785 -34267793 - L1MEc LINE L1 -4901 1495 1441 1476 158 15 4 chr3 193256785 193257051 -34267527 + L1MA6 LINE L1 6020 6288 -12 356 267 64 60 chr3 193257051 193257492 -34267086 - L1MEc LINE L1 -4955 1441 996 676 268 169 72 chr3 193257535 193258199 -34266379 + LTR41 LTR ERVL 36 763 -10 280 328 9 26 chr3 193258434 193258550 -34266028 - L1MEc LINE L1 -5952 253 140 315 0 0 0 chr3 193259056 193259091 -34265487 + (CA)n Simple_repeat Simple_repeat 2 36 0 24 0 0 0 chr3 193259639 193259663 -34264915 + AT_rich Low_complexity Low_complexity 1 24 0 183 178 27 14 chr3 193260773 193260846 -34263732 + (TA)n Simple_repeat Simple_repeat 1 74 0 301 264 104 87 chr3 193260887 193261188 -34263390 + L1ME LINE L1 5328 5638 -483 1992 112 3 14 chr3 193261188 193261520 -34263058 - AluSx SINE Alu 0 331 3 301 264 104 87 chr3 193261520 193261573 -34263005 + L1ME LINE L1 5638 5689 -432 1947 136 0 4 chr3 193261868 193262148 -34262430 + AluSx SINE Alu 1 279 -33 497 264 81 20 chr3 193263972 193264120 -34260458 - MIR SINE MIR -70 192 36 249 298 75 0 chr3 193264719 193264813 -34259765 + L3b LINE CR1 1303 1403 -180 268 286 0 32 chr3 193265039 193265102 -34259476 + L2 LINE L2 3202 3262 -10 258 318 28 56 chr3 193265344 193265451 -34259127 + MIR SINE MIR 19 122 -86 22 80 0 0 chr3 193265569 193265619 -34258959 + AT_rich Low_complexity Low_complexity 1 50 0 356 346 81 7 chr3 193266106 193266242 -34258336 - L2 LINE L2 0 3272 3127 738 190 22 0 chr3 193266552 193266689 -34257889 - MER20 DNA MER1_type -79 140 1 268 309 96 9 chr3 193266691 193266911 -34257667 + L1 LINE L1 3671 3909 -2237 238 220 0 0 chr3 193266915 193266965 -34257613 + (TA)n Simple_repeat Simple_repeat 2 51 0 267 31 0 0 chr3 193266966 193266998 -34257580 + (TG)n Simple_repeat Simple_repeat 1 32 0 3582 136 10 2 chr3 193267001 193267524 -34257054 - MER1A DNA MER1_type 0 527 1 22 0 0 0 chr3 193267816 193267838 -34256740 + AT_rich Low_complexity Low_complexity 1 22 0 1000 159 0 0 chr3 193267838 193267989 -34256589 - FRAM SINE Alu -25 151 1 22 0 0 0 chr3 193268746 193268768 -34255810 + AT_rich Low_complexity Low_complexity 1 22 0 566 312 45 14 chr3 193269741 193269962 -34254616 - MIR SINE MIR -33 229 2 329 327 75 0 chr3 193270019 193270126 -34254452 + L2 LINE L2 3198 3312 -1 21 57 0 0 chr3 193270837 193270872 -34253706 + AT_rich Low_complexity Low_complexity 1 35 0 209 182 18 0 chr3 193271558 193271613 -34252965 + GA-rich Low_complexity Low_complexity 1 56 0 1662 265 48 20 chr3 193271832 193272074 -34252504 - L1ME3A LINE L1 -276 5894 5660 1043 184 0 156 chr3 193272074 193272357 -34252221 - MER8 DNA MER2_type 0 239 1 1662 265 48 20 chr3 193272357 193272673 -34251905 - L1ME3A LINE L1 -510 5660 5320 1555 291 72 51 chr3 193272694 193273300 -34251278 - L1ME3A LINE L1 -1999 4147 3508 432 0 0 0 chr3 193273300 193273348 -34251230 + (TG)n Simple_repeat Simple_repeat 1 48 0 1555 291 72 51 chr3 193273348 193273832 -34250746 - L1ME3A LINE L1 -2638 3508 3035 228 321 76 54 chr3 193273846 193274030 -34250548 - MLT1F LTR MaLR -5 537 350 741 285 40 87 chr3 193274295 193275027 -34249551 + MER57-int LTR ERV1 2357 4093 -778 24 0 0 0 chr3 193275168 193275192 -34249386 + AT_rich Low_complexity Low_complexity 1 24 0 1968 302 36 36 chr3 193275531 193276444 -34248134 + MER57-int LTR ERV1 6237 7149 -388 527 236 33 8 chr3 193276469 193276784 -34247794 + MER57A LTR ERV1 20 403 0 1829 187 16 29 chr3 193276786 193277166 -34247412 + MER57-int LTR ERV1 5388 5762 -1775 2414 61 24 0 chr3 193277175 193277471 -34247107 - AluY SINE Alu -8 303 1 980 297 17 28 chr3 193277563 193278323 -34246255 + MER57-int LTR ERV1 2243 6162 -1375 780 295 55 25 chr3 193279170 193279533 -34245045 + MER57-int LTR ERV1 6775 7148 -389 641 285 63 11 chr3 193279534 193279866 -34244712 + MER57B LTR ERV1 11 403 0 229 174 0 22 chr3 193279958 193280004 -34244574 - MIR3 SINE MIR -35 173 129 194 367 73 11 chr3 193280396 193280573 -34244005 + MIR SINE MIR 75 262 0 24 0 0 0 chr3 193280682 193280706 -34243872 + AT_rich Low_complexity Low_complexity 1 24 0 3392 177 50 3 chr3 193280708 193281424 -34243154 - L1MA4 LINE L1 -9 6291 5542 358 159 40 58 chr3 193281583 193281728 -34242850 + Alu SINE Alu 238 305 0 190 244 0 0 chr3 193281838 193281879 -34242699 - MIR SINE MIR -6 256 216 1044 236 59 84 chr3 193282900 193283003 -34241575 + LTR37B LTR ERV1 6 110 -358 523 225 48 101 chr3 193283003 193283230 -34241348 - MER20 DNA MER1_type -1 218 4 1044 236 59 84 chr3 193283230 193283601 -34240977 + LTR37B LTR ERV1 110 468 0 586 260 212 14 chr3 193284147 193284435 -34240143 - MER113 DNA MER1_type? -175 346 2 313 380 76 6 chr3 193284555 193284713 -34239865 + MIR3 SINE MIR 19 187 -21 1705 203 25 25 chr3 193285092 193285457 -34239121 + MLT1A1 LTR MaLR 1 365 0 383 242 298 6 chr3 193285608 193285769 -34238809 - MER3 DNA MER1_type 0 209 2 185 326 33 33 chr3 193287796 193287888 -34236690 - MIR3 SINE MIR -1 207 116 217 323 167 35 chr3 193288822 193288918 -34235660 - L2 LINE L2 -657 2657 2575 185 0 40 0 chr3 193288918 193288943 -34235635 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 217 323 167 35 chr3 193288943 193289134 -34235444 - L2 LINE L2 -739 2575 2332 28 0 0 0 chr3 193290197 193290225 -34234353 + AT_rich Low_complexity Low_complexity 1 28 0 24 53 0 0 chr3 193291076 193291114 -34233464 + AT_rich Low_complexity Low_complexity 1 38 0 476 273 91 18 chr3 193291445 193291610 -34232968 - MER5B DNA MER1_type -1 177 1 1668 158 3 20 chr3 193291999 193292302 -34232276 + AluJb SINE Alu 1 298 -14 22 0 0 0 chr3 193292311 193292333 -34232245 + AT_rich Low_complexity Low_complexity 1 22 0 2164 126 0 0 chr3 193292378 193292688 -34231890 + AluSx SINE Alu 1 310 -2 1113 309 28 55 chr3 193292775 193293303 -34231275 + MLT1H LTR MaLR 36 549 0 1817 196 63 42 chr3 193293921 193294416 -34230162 - MLT1D LTR MaLR 0 505 1 1578 271 115 52 chr3 193295579 193296185 -34228393 + HAL1 LINE L1 48 614 -1893 212 0 36 0 chr3 193296185 193296213 -34228365 + (TC)n Simple_repeat Simple_repeat 1 29 0 * 324 0 0 0 chr3 193296212 193296248 -34228330 + (CA)n Simple_repeat Simple_repeat 1 36 0 1578 271 115 52 chr3 193296213 193297016 -34227562 + HAL1 LINE L1 614 1589 -918 3932 125 60 15 chr3 193297492 193298356 -34226222 + L1PB4 LINE L1 5043 5943 -213 1989 149 3 15 chr3 193298356 193298690 -34225888 + L1PB4 LINE L1 5823 6154 -2 401 282 35 28 chr3 193298866 193299008 -34225570 + MIR SINE MIR 119 261 -1 26 0 0 0 chr3 193299915 193299941 -34224637 + AT_rich Low_complexity Low_complexity 1 26 0 345 338 90 0 chr3 193300839 193300984 -34223594 + MIR SINE MIR 49 206 -56 638 256 73 16 chr3 193301531 193301722 -34222856 + MIR SINE MIR 50 251 -11 2268 88 65 29 chr3 193301832 193302183 -34222395 - THE1B LTR MaLR 0 364 1 315 234 78 0 chr3 193303602 193303679 -34220899 + MIR SINE MIR 7 89 -173 568 285 75 37 chr3 193303679 193304250 -34220328 - MLT1G1 LTR MaLR 0 595 1 638 221 28 7 chr3 193304252 193304397 -34220181 + MIR SINE MIR 87 234 -28 196 373 37 83 chr3 193304379 193304620 -34219958 + L2 LINE L2 2952 3181 -91 * 460 285 153 31 chr3 193306938 193307118 -34217460 - MER102b DNA MER1_type -1102 326 169 1499 183 32 11 chr3 193307118 193307402 -34217176 - AluJo SINE Alu -22 290 1 460 285 153 31 chr3 193307402 193307414 -34217164 - MER102b DNA MER1_type -1259 169 160 2349 166 24 5 chr3 193307414 193307829 -34216749 + MSTB LTR MaLR 2 424 -2 460 285 153 31 chr3 193307829 193307923 -34216655 - MER102b DNA MER1_type -1268 160 4 252 251 125 56 chr3 193309258 193309427 -34215151 - MIR SINE MIR -54 208 32 1712 136 3 87 chr3 193309682 193310058 -34214520 - MER4A LTR ERV1 0 664 261 671 133 0 0 chr3 193310058 193310156 -34214422 - MER4A LTR ERV1 -566 98 1 223 339 198 0 chr3 193314073 193314194 -34210384 + L2 LINE L2 3126 3270 -2 202 254 83 88 chr3 193314870 193315051 -34209527 + L2 LINE L2 1812 1991 -1323 289 327 44 25 chr3 193315234 193315393 -34209185 + L2 LINE L2 2155 2316 -998 3693 132 44 59 chr3 193316060 193316857 -34207721 - LTR1 LTR ERV1 0 785 1 186 275 0 0 chr3 193317752 193317792 -34206786 + L2 LINE L2 3262 3301 -12 1902 190 10 13 chr3 193317815 193318204 -34206374 + MLT1B LTR MaLR 3 390 0 438 103 138 0 chr3 193318598 193318685 -34205893 - LTR37B LTR ERV1 -6 462 364 441 0 0 0 chr3 193318686 193318735 -34205843 + (CA)n Simple_repeat Simple_repeat 2 50 0 241 263 18 88 chr3 193318735 193318906 -34205672 - LTR37A LTR ERV1 -157 269 111 226 295 29 38 chr3 193319027 193319132 -34205446 - L2 LINE L2 -957 2357 2254 309 336 50 17 chr3 193319772 193319891 -34204687 - L2 LINE L2 0 3272 3150 302 133 82 22 chr3 193320909 193321044 -34203534 + (TA)n Simple_repeat Simple_repeat 2 144 0 2332 48 0 7 chr3 193321963 193322258 -34202320 + L1PA6 LINE L1 5862 6154 0 24 53 0 0 chr3 193322291 193322329 -34202249 + AT_rich Low_complexity Low_complexity 1 38 0 421 228 70 18 chr3 193322419 193322533 -34202045 + FLAM_A SINE Alu 1 120 -13 192 77 0 0 chr3 193322534 193322560 -34202018 + (GA)n Simple_repeat Simple_repeat 1 26 0 925 50 0 0 chr3 193322839 193322958 -34201620 + L1PA6 LINE L1 5862 5980 -174 276 152 0 0 chr3 193324167 193324213 -34200365 - MARNA DNA Mariner -342 244 199 28 29 0 0 chr3 193325796 193325831 -34198747 + AT_rich Low_complexity Low_complexity 1 35 0 2389 85 0 0 chr3 193326409 193326714 -34197864 + AluY SINE Alu 1 305 -6 214 268 89 0 chr3 193327115 193327171 -34197407 + L2 LINE L2 3211 3271 -1 317 301 86 18 chr3 193328018 193328181 -34196397 + MER117 DNA MER1_type 22 195 -2 2386 69 7 13 chr3 193329200 193329505 -34195073 - AluY SINE Alu -6 305 3 473 277 82 36 chr3 193329817 193330037 -34194541 - L1ME LINE L1 -369 5752 5523 1638 172 105 6 chr3 193330226 193330558 -34194020 - MLT1A1 LTR MaLR 0 365 1 422 333 174 14 chr3 193331887 193332100 -34192478 + MIR SINE MIR 14 260 -2 1895 113 62 0 chr3 193334245 193334519 -34190059 - AluSx SINE Alu -21 291 1 825 254 63 1 chr3 193334675 193334902 -34189676 - MIR SINE MIR -4 258 16 26 30 0 0 chr3 193336496 193336529 -34188049 + AT_rich Low_complexity Low_complexity 1 33 0 231 278 296 0 chr3 193337416 193337524 -34187054 + L2 LINE L2 3133 3272 0 31 0 0 0 chr3 193338799 193338830 -34185748 + AT_rich Low_complexity Low_complexity 1 31 0 5780 145 24 16 chr3 193339779 193341423 -34183155 + L1MA8 LINE L1 4632 6288 -3 282 264 182 21 chr3 193341884 193342057 -34182521 - MIR SINE MIR -63 145 4 22 0 0 0 chr3 193342730 193342752 -34181826 + AT_rich Low_complexity Low_complexity 1 22 0 201 306 0 0 chr3 193343947 193343996 -34180582 + CT-rich Low_complexity Low_complexity 3 51 0 269 275 30 76 chr3 193344081 193344212 -34180366 - MER112 DNA MER1_type -7 253 129 616 252 69 5 chr3 193344433 193344651 -34179927 + LTR37B LTR ERV1 198 429 -39 2743 166 0 74 chr3 193344651 193345192 -34179386 - MLT2B2 LTR ERVL 0 515 15 466 217 17 25 chr3 193345255 193345375 -34179203 - MER112 DNA MER1_type -141 119 1 187 275 75 62 chr3 193346584 193346664 -34177914 + MIR SINE MIR 65 145 -63 25 51 0 0 chr3 193346799 193346838 -34177740 + AT_rich Low_complexity Low_complexity 1 39 0 195 343 56 46 chr3 193347515 193347623 -34176955 + MIR SINE MIR 11 119 -143 320 320 84 49 chr3 193348030 193348255 -34176323 + L2 LINE L2 3081 3313 0 213 385 31 0 chr3 193348523 193348619 -34175959 - L3b LINE CR1 -63 1520 1422 194 62 31 0 chr3 193349258 193349290 -34175288 + (CTAAA)n Simple_repeat Simple_repeat 4 36 0 299 166 43 7 chr3 193349799 193349938 -34174640 + (TA)n Simple_repeat Simple_repeat 1 144 0 204 267 0 0 chr3 193350210 193350255 -34174323 + T-rich Low_complexity Low_complexity 1 45 0 230 165 58 29 chr3 193352468 193352501 -34172077 + (TA)n Simple_repeat Simple_repeat 1 32 -74 2112 115 3 0 chr3 193352501 193352788 -34171790 + AluSx SINE Alu 1 288 -24 230 165 58 29 chr3 193352788 193352857 -34171721 + (TA)n Simple_repeat Simple_repeat 32 106 0 2256 64 0 3 chr3 193354223 193354530 -34170048 + AluY SINE Alu 1 306 0 277 204 32 21 chr3 193354736 193354829 -34169749 + (TA)n Simple_repeat Simple_repeat 1 94 0 41 87 0 0 chr3 193354919 193355023 -34169555 + AT_rich Low_complexity Low_complexity 1 104 0 240 292 21 73 chr3 193355443 193355539 -34169039 + MIR SINE MIR 71 162 -46 347 325 70 6 chr3 193359264 193359421 -34165157 - MIR SINE MIR -73 189 23 969 89 22 17 chr3 193360280 193360339 -34164239 + (GAAA)n Simple_repeat Simple_repeat 1 239 0 969 89 22 17 chr3 193360339 193360518 -34164060 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 25 31 0 0 chr3 193361146 193361178 -34163400 + AT_rich Low_complexity Low_complexity 1 32 0 684 289 126 53 chr3 193361692 193362104 -34162474 + L3 LINE CR1 630 1071 -506 30 27 0 0 chr3 193362365 193362402 -34162176 + AT_rich Low_complexity Low_complexity 1 37 0 2053 44 0 0 chr3 193362950 193363199 -34161379 + L1PA4 LINE L1 5905 6153 -2 366 276 47 57 chr3 193363674 193363866 -34160712 + MIR SINE MIR 28 217 -45 4654 113 4 4 chr3 193365357 193366057 -34158521 + L1PA15 LINE L1 5463 6162 -3 258 32 0 0 chr3 193366062 193366093 -34158485 + (TAAAA)n Simple_repeat Simple_repeat 3 33 0 212 311 40 27 chr3 193367414 193367488 -34157090 - L2 LINE L2 -15 3298 3224 910 220 0 0 chr3 193368124 193368301 -34156277 - FRAM SINE Alu 0 176 1 25 0 0 0 chr3 193369122 193369147 -34155431 + AT_rich Low_complexity Low_complexity 1 25 0 243 0 0 0 chr3 193369981 193370008 -34154570 + (TG)n Simple_repeat Simple_repeat 2 28 0 198 0 0 0 chr3 193371544 193371566 -34153012 + (A)n Simple_repeat Simple_repeat 1 22 0 409 289 24 62 chr3 193372038 193372246 -34152332 + MIR SINE MIR 6 205 -57 641 294 82 22 chr3 193374525 193374841 -34149737 + MER102b DNA MER1_type 1 335 -6 459 264 28 51 chr3 193375139 193375194 -34149384 + MER5B DNA MER1_type 5 60 -118 2202 113 3 3 chr3 193375194 193375496 -34149082 + AluSq SINE Alu 1 302 -11 459 264 28 51 chr3 193375496 193375618 -34148960 + MER5B DNA MER1_type 60 178 0 472 327 106 0 chr3 193376677 193376894 -34147684 - MIR SINE MIR -18 244 5 310 169 78 0 chr3 193376920 193377062 -34147516 + (TA)n Simple_repeat Simple_repeat 1 153 0 6332 98 31 3 chr3 193377355 193379086 -34145492 + L1PA8 LINE L1 4426 6172 0 1610 234 77 47 chr3 193379390 193379962 -34144616 - L1ME2 LINE L1 -62 6102 5514 209 105 0 26 chr3 193380042 193380080 -34144498 + (CAAAAA)n Simple_repeat Simple_repeat 2 38 0 305 278 117 25 chr3 193380208 193380370 -34144208 + L2 LINE L2 1922 2098 -1216 526 113 0 0 chr3 193380850 193380930 -34143648 + L1PA8 LINE L1 6087 6166 -6 2028 125 0 13 chr3 193380963 193381276 -34143302 + AluSx SINE Alu 3 311 -1 340 400 19 7 chr3 193381329 193381484 -34143094 + L2 LINE L2 3116 3272 0 386 289 121 26 chr3 193381509 193381699 -34142879 - L2 LINE L2 -397 2917 2710 180 0 0 0 chr3 193384122 193384142 -34140436 + (TA)n Simple_repeat Simple_repeat 2 21 0 22 35 0 0 chr3 193384182 193384211 -34140367 + AT_rich Low_complexity Low_complexity 1 29 0 737 258 98 29 chr3 193384307 193384551 -34140027 - MIR SINE MIR -1 261 1 824 219 49 29 chr3 193384573 193384778 -34139800 - MER3 DNA MER1_type 0 209 1 555 259 88 34 chr3 193385107 193385312 -34139266 + MIR SINE MIR 9 224 -38 361 290 38 30 chr3 193385644 193385775 -34138803 - MER5A DNA MER1_type -51 138 7 472 330 9 52 chr3 193386246 193386482 -34138096 + MIR SINE MIR 11 236 -26 609 110 0 0 chr3 193387081 193387172 -34137406 + (CA)n Simple_repeat Simple_repeat 2 92 0 2422 76 0 10 chr3 193387178 193387492 -34137086 - AluY SINE Alu 0 311 1 277 324 179 36 chr3 193388075 193388885 -34135693 - L2 LINE L2 -612 2702 1777 285 373 48 57 chr3 193389315 193389543 -34135035 + L2 LINE L2 2998 3223 -49 624 91 0 0 chr3 193389639 193389727 -34134851 + (GGAA)n Simple_repeat Simple_repeat 3 90 0 218 263 38 50 chr3 193389727 193389807 -34134771 + MIR SINE MIR 20 98 -110 22 0 0 0 chr3 193391533 193391555 -34133023 + AT_rich Low_complexity Low_complexity 1 22 0 485 308 70 14 chr3 193391559 193391773 -34132805 + MIR SINE MIR 5 230 -32 635 263 49 68 chr3 193392225 193392491 -34132087 + MIR SINE MIR 2 262 0 2379 86 12 0 chr3 193392857 193393182 -34131396 + L1PA8 LINE L1 5813 6141 -31 495 321 63 73 chr3 193394233 193394520 -34130058 - L2 LINE L2 -1 3271 2988 1590 176 13 10 chr3 193395092 193395393 -34129185 - AluJo SINE Alu -9 303 2 2277 176 56 24 chr3 193395789 193396419 -34128159 - L1MA9 LINE L1 -8 7723 7037 397 132 13 26 chr3 193396419 193396495 -34128083 + MSTC LTR MaLR 354 428 0 6450 205 20 20 chr3 193396495 193396581 -34127997 - L1MA9 LINE L1 -885 6680 6595 254 0 87 0 chr3 193396581 193396627 -34127951 + (TTG)n Simple_repeat Simple_repeat 2 51 0 6450 205 20 20 chr3 193396627 193397150 -34127428 - L1MA9 LINE L1 -970 6595 6073 511 133 0 44 chr3 193397150 193397240 -34127338 + L1PA11 LINE L1 6089 6174 0 6450 205 20 20 chr3 193397240 193398116 -34126462 - L1MA9 LINE L1 -1491 6074 5194 6504 52 2 1 chr3 193398144 193398956 -34125622 - L1PA5 LINE L1 -4 6150 5338 13822 43 0 3 chr3 193398956 193400692 -34123886 + L1P LINE L1 2900 4630 -1516 485 186 10 0 chr3 193400689 193400786 -34123792 - L1MA9 LINE L1 -2355 5210 5113 * 971 139 20 0 chr3 193400786 193400971 -34123607 - AluSg/x SINE Alu 0 317 130 5006 257 54 20 chr3 193400972 193403750 -34120828 - L1MA9 LINE L1 -2457 5108 2268 1697 204 40 8 chr3 193405210 193405562 -34119016 - MLT1A1 LTR MaLR 0 365 3 3380 59 2 0 chr3 193405903 193406364 -34118214 - L1P LINE L1 -2785 3361 2900 6579 44 2 1 chr3 193406364 193407180 -34117398 + L1PA5 LINE L1 5338 6154 0 227 96 77 19 chr3 193407224 193407276 -34117302 + L1P5 LINE L1 5843 5897 -254 438 272 40 16 chr3 193407451 193407576 -34117002 - MIR3 SINE MIR -14 194 67 1658 123 0 84 chr3 193407689 193407973 -34116605 - AluSq SINE Alu -53 260 1 298 207 23 23 chr3 193407973 193408060 -34116518 + MER5C DNA MER1_type 170 256 -68 1116 181 14 23 chr3 193408068 193408283 -34116295 - AluJb SINE Alu -15 297 85 308 233 105 0 chr3 193408285 193408371 -34116207 + LTR33 LTR ERVL 1 95 -426 1634 193 66 39 chr3 193408373 193408647 -34115931 - Charlie1b DNA MER1_type -2240 521 227 780 104 7 30 chr3 193408647 193408782 -34115796 - FLAM_C SINE Alu 0 133 2 1634 193 66 39 chr3 193408782 193408989 -34115589 - Charlie1b DNA MER1_type -2534 227 27 2168 112 0 0 chr3 193409639 193409935 -34114643 + AluY SINE Alu 1 296 -15 2154 94 0 42 chr3 193409941 193410248 -34114330 + AluSg1 SINE Alu 1 294 -15 779 223 41 10 chr3 193410381 193410578 -34114000 - AluJb SINE Alu -28 284 82 2105 125 3 0 chr3 193411270 193411567 -34113011 + AluSq SINE Alu 1 298 -15 2095 107 0 4 chr3 193411598 193411905 -34112673 + AluSc SINE Alu 1 306 0 2045 126 0 10 chr3 193412781 193413083 -34111495 - AluSx SINE Alu -13 299 1 222 265 0 0 chr3 193413198 193413247 -34111331 + MIR SINE MIR 62 110 -152 454 186 113 24 chr3 193413970 193414071 -34110507 + MER58B DNA MER1_type 193 308 -2112 2176 146 14 3 chr3 193414071 193414428 -34110150 + MER46B DNA MER2_type 1 236 0 454 186 113 24 chr3 193414428 193414450 -34110128 + MER58B DNA MER1_type 308 327 -14 1186 188 5 10 chr3 193414768 193414970 -34109608 - AluJo SINE Alu -109 203 3 2333 104 0 3 chr3 193414996 193415303 -34109275 - AluSx SINE Alu -6 306 1 683 174 0 0 chr3 193415381 193415496 -34109082 - AluJb SINE Alu -8 304 190 880 112 0 0 chr3 193415508 193415624 -34108954 - AluSq/x SINE Alu -196 116 1 418 118 284 49 chr3 193416122 193416224 -34108354 - FLAM_C SINE Alu -5 128 3 1921 149 0 0 chr3 193416333 193416614 -34107964 - AluSq SINE Alu -32 281 1 540 54 0 14 chr3 193416614 193416688 -34107890 - MLT2B1 LTR ERVL -447 73 1 24 0 0 0 chr3 193417136 193417160 -34107418 + GC_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 193417957 193417978 -34106600 + AT_rich Low_complexity Low_complexity 1 21 0 1033 256 157 3 chr3 193418125 193418438 -34106140 + MLT1G LTR MaLR 10 370 -220 1180 206 36 0 chr3 193418632 193418851 -34105727 + AluJb SINE Alu 55 281 -31 192 40 0 0 chr3 193418855 193418880 -34105698 + (CAAAA)n Simple_repeat Simple_repeat 2 26 0 672 165 4 98 chr3 193419073 193419309 -34105269 - AluSq SINE Alu -8 305 92 246 62 0 0 chr3 193419608 193419640 -34104938 + (T)n Simple_repeat Simple_repeat 1 32 0 826 252 156 17 chr3 193420208 193420510 -34104068 - MER2 DNA MER2_type 0 344 1 515 206 8 30 chr3 193420537 193420668 -34103910 - FLAM_C SINE Alu -5 128 1 45 45 0 0 chr3 193421227 193421293 -34103285 + GC_rich Low_complexity Low_complexity 1 66 0 1488 194 43 31 chr3 193421514 193421864 -34102714 + MLT1A1 LTR MaLR 12 365 0 442 262 104 24 chr3 193422042 193422206 -34102372 + Charlie8 DNA MER1_type 107 283 -2134 895 28 0 9 chr3 193422400 193422506 -34102072 + AluY SINE Alu 195 299 -12 326 226 122 52 chr3 193423163 193423278 -34101300 + MIR SINE MIR 20 142 -120 363 268 45 18 chr3 193424585 193424697 -34099881 + MIR SINE MIR 22 136 -126 799 304 37 25 chr3 193424710 193424953 -34099625 - MIR SINE MIR -6 256 11 6522 89 4 0 chr3 193425018 193426054 -34098524 - L1PA11 LINE L1 -2 6172 5141 2182 194 2 38 chr3 193426079 193426528 -34098050 - Tigger2a DNA MER2_type -1 433 1 30 27 0 0 chr3 193426530 193426567 -34098011 + AT_rich Low_complexity Low_complexity 1 37 0 218 215 31 15 chr3 193428108 193428173 -34096405 + (TAAA)n Simple_repeat Simple_repeat 3 68 0 755 135 85 0 chr3 193430133 193430381 -34094197 - L1MA4 LINE L1 -1501 4645 4280 * 4389 154 11 24 chr3 193430376 193431710 -34092868 + L1MA4 LINE L1 4645 5973 -327 723 206 201 0 chr3 193431714 193431933 -34092645 + MSTC-int LTR MaLR 1384 1646 -5 1426 217 87 41 chr3 193431938 193432315 -34092263 + MSTC LTR MaLR 1 368 -28 742 172 0 16 chr3 193432315 193432437 -34092141 - FLAM_C SINE Alu -12 121 2 1426 217 87 41 chr3 193432437 193432468 -34092110 + MSTC LTR MaLR 368 396 0 1977 154 0 6 chr3 193432616 193432928 -34091650 + AluJb SINE Alu 3 312 0 188 88 59 0 chr3 193432931 193432965 -34091613 + A-rich Low_complexity Low_complexity 4 39 0 568 306 72 34 chr3 193432965 193433467 -34091111 + L1M4c LINE L1 1123 1788 -4775 430 226 7 29 chr3 193433461 193433598 -34090980 + L1M4c LINE L1 2206 2339 -4224 * 234 186 43 14 chr3 193434259 193434329 -34090249 - L1P LINE L1 -742 5389 5318 2234 121 0 0 chr3 193435388 193435695 -34088883 + AluSx SINE Alu 5 311 -1 496 341 139 32 chr3 193436149 193437084 -34087494 - L2 LINE L2 -5 3267 2233 2357 132 10 20 chr3 193437099 193437500 -34087078 - L1PA15 LINE L1 0 6165 5769 2146 110 13 10 chr3 193437502 193437812 -34086766 - AluY SINE Alu 0 311 1 185 369 0 0 chr3 193437816 193437881 -34086697 - MIR SINE MIR -66 142 78 1226 137 2 1 chr3 193439152 193441032 -34083546 + ALR/Alpha Satellite centromeric 1 1881 -3 881 203 7 3 chr3 193441044 193441266 -34083312 + ALR/Alpha Satellite centromeric 1 222 -26 216 296 174 10 chr3 193442279 193442377 -34082201 - MIR SINE MIR -97 165 52 208 163 23 0 chr3 193445935 193445978 -34078600 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 203 152 0 0 chr3 193446485 193446518 -34078060 + (TTCA)n Simple_repeat Simple_repeat 4 36 0 517 291 101 105 chr3 193446520 193446997 -34077581 - L2 LINE L2 0 3313 2839 207 100 0 0 chr3 193447898 193447928 -34076650 + (TA)n Simple_repeat Simple_repeat 2 31 0 199 215 31 0 chr3 193449718 193449783 -34074795 + GA-rich Low_complexity Low_complexity 2 68 0 2011 167 85 13 chr3 193451141 193451531 -34073047 + MER47B DNA MER2_type 1 418 0 336 255 67 96 chr3 193452727 193452935 -34071643 + L2 LINE L2 3111 3312 -1 2152 134 0 0 chr3 193453150 193453457 -34071121 + AluSg SINE Alu 4 310 0 30 69 0 0 chr3 193460756 193460814 -34063764 + AT_rich Low_complexity Low_complexity 1 58 0 2208 86 28 0 chr3 193461782 193462073 -34062505 - AluSg SINE Alu -11 299 1 2324 90 7 0 chr3 193462560 193462861 -34061717 - AluSp SINE Alu -10 303 1 490 295 65 15 chr3 193463156 193463373 -34061205 + MIR SINE MIR 34 262 0 1581 195 19 59 chr3 193463857 193464231 -34060347 + MLT1B LTR MaLR 32 390 0 51 51 0 0 chr3 193467749 193467828 -34056750 + AT_rich Low_complexity Low_complexity 1 79 0 317 189 316 0 chr3 193469674 193469769 -34054809 - L2 LINE L2 0 3313 3189 279 246 164 0 chr3 193472057 193472167 -34052411 - MIR3 SINE MIR -46 162 35 21 36 0 0 chr3 193472353 193472381 -34052197 + AT_rich Low_complexity Low_complexity 1 28 0 2031 145 3 0 chr3 193473196 193473506 -34051072 + AluSx SINE Alu 1 311 -1 408 239 53 18 chr3 193473571 193473684 -34050894 - MIR3 SINE MIR -7 201 85 281 264 44 22 chr3 193474136 193474227 -34050351 - MIR SINE MIR -56 206 114 1533 159 28 28 chr3 193474702 193474991 -34049587 + AluJo SINE Alu 1 289 -23 767 254 143 5 chr3 193475098 193475315 -34049263 + MIR SINE MIR 15 261 -1 23 86 0 0 chr3 193476466 193476524 -34048054 + AT_rich Low_complexity Low_complexity 1 58 0 2333 88 0 7 chr3 193476676 193477047 -34047531 + AluSq SINE Alu 4 372 0 380 264 0 27 chr3 193477277 193477387 -34047191 - L2 LINE L2 -14 3299 3193 289 250 185 11 chr3 193477553 193477645 -34046933 + L2 LINE L2 2956 3063 -209 373 240 148 45 chr3 193477785 193478061 -34046517 + MLT1J1 LTR MaLR 114 446 0 459 0 0 0 chr3 193478334 193478385 -34046193 + (TA)n Simple_repeat Simple_repeat 1 51 0 2438 71 0 0 chr3 193478386 193478683 -34045895 - AluY SINE Alu -14 297 1 234 0 0 0 chr3 193478776 193478802 -34045776 + (CA)n Simple_repeat Simple_repeat 1 26 0 22 0 0 0 chr3 193479084 193479106 -34045472 + AT_rich Low_complexity Low_complexity 1 22 0 301 271 75 19 chr3 193479787 193479894 -34044684 - MIR3 SINE MIR -5 203 91 290 164 0 16 chr3 193482135 193482196 -34042382 + GA-rich Low_complexity Low_complexity 4 63 0 634 265 148 45 chr3 193482198 193482557 -34042021 + MLT1J LTR MaLR 103 498 -13 379 309 41 0 chr3 193482581 193482704 -34041874 + MIR3 SINE MIR 44 171 -37 216 0 0 0 chr3 193485227 193485251 -34039327 + (TG)n Simple_repeat Simple_repeat 2 25 0 183 114 0 0 chr3 193485631 193485666 -34038912 + (TCTA)n Simple_repeat Simple_repeat 4 38 0 25 31 0 0 chr3 193485676 193485708 -34038870 + AT_rich Low_complexity Low_complexity 1 32 0 1808 70 12 0 chr3 193486783 193487025 -34037553 + L1PA6 LINE L1 5907 6151 -3 23 0 0 0 chr3 193487765 193487788 -34036790 + AT_rich Low_complexity Low_complexity 1 23 0 2395 96 0 0 chr3 193489169 193489471 -34035107 - AluSx SINE Alu -10 302 1 319 164 16 0 chr3 193489901 193489920 -34034658 + MER3 DNA MER1_type 29 48 -161 859 180 88 21 chr3 193489920 193490114 -34034464 - MER3 DNA MER1_type -1 208 2 2269 101 0 3 chr3 193491529 193491835 -34032743 + AluSx SINE Alu 1 305 -7 333 0 0 0 chr3 193492257 193492294 -34032284 + (CA)n Simple_repeat Simple_repeat 2 38 0 213 323 0 0 chr3 193493290 193493352 -34031226 + L2 LINE L2 3250 3311 -2 435 238 30 0 chr3 193496368 193496469 -34028109 + MER5A DNA MER1_type 9 112 -77 1790 183 7 3 chr3 193496788 193497078 -34027500 + AluJb SINE Alu 1 291 -21 204 125 0 0 chr3 193497813 193497845 -34026733 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 413 167 30 45 chr3 193497957 193498089 -34026489 - Charlie7 DNA MER1_type -2 2610 2481 213 429 38 0 chr3 193498315 193498420 -34026158 + L2 LINE L2 3156 3264 -8 311 168 0 4 chr3 193498480 193498684 -34025894 + AluJo SINE Alu 1 292 -10 198 0 0 0 chr3 193499831 193499853 -34024725 + (CA)n Simple_repeat Simple_repeat 1 22 0 202 239 0 0 chr3 193499854 193499900 -34024678 + (TA)n Simple_repeat Simple_repeat 2 47 0 208 363 29 0 chr3 193499915 193500017 -34024561 - MIR SINE MIR -81 181 77 183 276 17 17 chr3 193504323 193504381 -34020197 + L2 LINE L2 3211 3268 -4 491 362 35 0 chr3 193506296 193506553 -34018025 - L3b LINE CR1 -160 1423 1158 22 0 0 0 chr3 193506632 193506654 -34017924 + AT_rich Low_complexity Low_complexity 1 22 0 1775 139 36 11 chr3 193507330 193507610 -34016968 + AluSx SINE Alu 14 300 -12 200 243 0 0 chr3 193508249 193508286 -34016292 - MIR SINE MIR -87 121 85 954 258 206 39 chr3 193508444 193509073 -34015505 + L2 LINE L2 2580 3311 -2 192 97 0 0 chr3 193511163 193511194 -34013384 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 34 24 0 0 chr3 193512884 193512925 -34011653 + AT_rich Low_complexity Low_complexity 1 41 0 23 33 0 0 chr3 193513782 193513812 -34010766 + AT_rich Low_complexity Low_complexity 1 30 0 183 328 0 30 chr3 193514739 193514806 -34009772 + MIR SINE MIR 49 113 -149 1120 318 84 21 chr3 193515657 193516170 -34008408 - L3 LINE CR1 -97 1480 936 2150 120 3 0 chr3 193517844 193518136 -34006442 + AluSq SINE Alu 2 294 -19 3380 118 7 0 chr3 193518555 193519095 -34005483 - L1P LINE L1 -3172 2974 2431 2080 134 0 3 chr3 193519095 193519387 -34005191 - AluSc SINE Alu -16 293 3 1744 186 0 0 chr3 193519458 193519738 -34004840 - AluSx SINE Alu -32 280 1 1959 191 85 36 chr3 193520478 193521008 -34003570 - L1MA9 LINE L1 -2 6310 5755 407 269 25 6 chr3 193521016 193521176 -34003402 + L1M LINE L1 5254 5416 -928 325 350 17 0 chr3 193521917 193522034 -34002544 + L2 LINE L2 3194 3312 -1 230 179 0 0 chr3 193522810 193522849 -34001729 - L2 LINE L2 -24 3289 3251 611 239 115 46 chr3 193522914 193523174 -34001404 + L2 LINE L2 3036 3313 0 180 271 21 0 chr3 193523200 193523248 -34001330 + MIR3 SINE MIR 159 207 -1 314 298 226 11 chr3 193523403 193523584 -34000994 + MIR SINE MIR 37 256 -6 182 325 12 12 chr3 193524373 193524453 -34000125 - MIR SINE MIR -6 256 177 265 393 30 7 chr3 193524689 193524824 -33999754 - MIR3 SINE MIR -40 168 31 254 195 58 69 chr3 193525175 193525262 -33999316 - MLT1E2 LTR MaLR -73 553 468 215 250 0 0 chr3 193528854 193528902 -33995676 - L2 LINE L2 0 3313 3266 24 0 0 0 chr3 193529762 193529786 -33994792 + AT_rich Low_complexity Low_complexity 1 24 0 28 29 0 0 chr3 193529917 193529952 -33994626 + AT_rich Low_complexity Low_complexity 1 35 0 206 162 0 0 chr3 193530374 193530411 -33994167 - L2 LINE L2 -22 3250 3214 24 53 0 0 chr3 193531710 193531748 -33992830 + AT_rich Low_complexity Low_complexity 1 38 0 2003 126 4 0 chr3 193531884 193532161 -33992417 + AluSq SINE Alu 1 278 -35 1029 306 117 27 chr3 193532187 193532776 -33991802 + L2 LINE L2 1986 2627 -687 1445 188 88 0 chr3 193532817 193533078 -33991500 + AluJb SINE Alu 24 307 -5 238 426 28 0 chr3 193533300 193533516 -33991062 + L2 LINE L2 2755 2976 -338 349 336 50 7 chr3 193533634 193533774 -33990804 + L2 LINE L2 3168 3313 0 496 284 74 11 chr3 193535215 193535391 -33989187 + MIR3 SINE MIR 19 205 -3 325 237 108 11 chr3 193535720 193535813 -33988765 - L2 LINE L2 -3 3269 3168 250 242 15 0 chr3 193535840 193535906 -33988672 + MER116 DNA Mariner 14 80 0 3980 276 95 28 chr3 193537404 193537850 -33986728 - L2 LINE L2 -374 2940 2526 2496 42 0 32 chr3 193537850 193538162 -33986416 - AluY SINE Alu -9 302 1 3980 276 95 28 chr3 193538162 193539271 -33985307 - L2 LINE L2 -788 2526 1280 327 245 20 48 chr3 193540058 193540205 -33984373 + GA-rich Low_complexity Low_complexity 3 145 0 399 287 178 6 chr3 193540419 193540593 -33983985 - MIR SINE MIR -11 251 48 1885 168 0 7 chr3 193542046 193542337 -33982241 - AluJb SINE Alu -23 289 1 5525 70 8 11 chr3 193543218 193544301 -33980277 + L1PA7 LINE L1 4601 5679 -475 2268 101 3 0 chr3 193544301 193544597 -33979981 + AluSx SINE Alu 1 297 -15 5525 70 8 11 chr3 193544597 193544940 -33979638 + L1PA7 LINE L1 5679 6021 -133 1933 231 17 0 chr3 193545084 193545495 -33979083 - MER69 DNA AcHobo -2003 523 106 450 221 7 36 chr3 193545497 193545637 -33978941 + L1ME3A LINE L1 6035 6170 0 253 184 92 46 chr3 193545642 193545709 -33978869 - MER69 DNA AcHobo -2418 108 35 2185 117 0 7 chr3 193545709 193546008 -33978570 + AluSx SINE Alu 1 297 -15 253 184 92 46 chr3 193546008 193546027 -33978551 - MER69 DNA AcHobo -2491 35 18 406 294 49 49 chr3 193546028 193546191 -33978387 + MIR3 SINE MIR 19 181 -27 1715 175 11 0 chr3 193546981 193547267 -33977311 - AluJb SINE Alu -22 290 2 21 0 0 0 chr3 193547979 193548000 -33976578 + AT_rich Low_complexity Low_complexity 1 21 0 458 228 110 0 chr3 193548287 193548414 -33976164 + MIR SINE MIR 56 196 -66 183 309 79 40 chr3 193548516 193548642 -33975936 - MIR3 SINE MIR -19 189 59 * 410 283 103 36 chr3 193548575 193548798 -33975780 - L2 LINE L2 -1392 1922 1685 355 290 65 0 chr3 193548854 193548961 -33975617 + MER94 DNA DNA 21 134 0 198 302 94 19 chr3 193549547 193549653 -33974925 - MIR SINE MIR -129 133 20 2119 109 0 3 chr3 193549859 193550152 -33974426 + AluSg SINE Alu 1 292 -18 2153 122 6 6 chr3 193551315 193551626 -33972952 + AluSx SINE Alu 1 311 -1 379 218 153 0 chr3 193552749 193552873 -33971705 - MIR SINE MIR -6 256 114 192 270 70 35 chr3 193553117 193553232 -33971346 - MIR SINE MIR -89 173 55 253 283 80 89 chr3 193554533 193554858 -33969720 - L2 LINE L2 -35 3237 2916 24 0 0 0 chr3 193555930 193555954 -33968624 + AT_rich Low_complexity Low_complexity 1 24 0 2133 123 0 7 chr3 193555957 193556267 -33968311 + AluSg SINE Alu 1 308 -2 1674 191 7 0 chr3 193558630 193558924 -33965654 - AluJb SINE Alu -16 296 1 26 0 0 0 chr3 193559089 193559115 -33965463 + AT_rich Low_complexity Low_complexity 1 26 0 209 208 0 0 chr3 193559471 193559519 -33965059 + (TA)n Simple_repeat Simple_repeat 1 48 0 464 290 59 30 chr3 193559683 193559852 -33964726 - MIR SINE MIR -24 238 65 258 298 153 15 chr3 193559880 193560011 -33964567 + MIR SINE MIR 59 207 -55 28 0 0 0 chr3 193560596 193560624 -33963954 + AT_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 193561967 193561995 -33962583 + AT_rich Low_complexity Low_complexity 1 28 0 22 70 0 0 chr3 193562225 193562268 -33962310 + AT_rich Low_complexity Low_complexity 1 43 0 596 149 0 9 chr3 193562418 193562532 -33962046 + (TTCC)n Simple_repeat Simple_repeat 3 115 0 22 0 0 0 chr3 193562642 193562664 -33961914 + AT_rich Low_complexity Low_complexity 1 22 0 583 271 32 0 chr3 193562993 193563144 -33961434 - MER5B DNA MER1_type -3 186 16 634 340 34 41 chr3 193566695 193567083 -33957495 + L2 LINE L2 2869 3253 -19 288 0 0 0 chr3 193567201 193567233 -33957345 + (TG)n Simple_repeat Simple_repeat 2 33 0 221 333 0 18 chr3 193567371 193567428 -33957150 + L2 LINE L2 3138 3193 -79 202 303 56 45 chr3 193567665 193567754 -33956824 + MIR SINE MIR 167 256 -6 747 164 43 0 chr3 193567874 193568014 -33956564 + MER5A DNA MER1_type 44 189 0 421 233 145 64 chr3 193568110 193568282 -33956296 + MER5A DNA MER1_type 4 189 0 3047 71 50 34 chr3 193569818 193570060 -33954518 + L1MA1 LINE L1 5817 6053 -249 2253 93 0 3 chr3 193570060 193570360 -33954218 + AluSc SINE Alu 1 299 -10 3047 71 50 34 chr3 193570360 193570595 -33953983 + L1MA1 LINE L1 6053 6302 0 23 0 0 0 chr3 193570867 193570890 -33953688 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 193571088 193571109 -33953469 + AT_rich Low_complexity Low_complexity 1 21 0 509 238 122 14 chr3 193573089 193573236 -33951342 + MIR3 SINE MIR 18 180 -28 318 365 0 0 chr3 193575109 193575205 -33949373 + MIR SINE MIR 29 124 -84 350 343 104 36 chr3 193575239 193575490 -33949088 + L1MC4a LINE L1 5349 5616 -2192 747 246 65 47 chr3 193575496 193575773 -33948805 + L1MC4a LINE L1 5683 5964 -1844 22 0 0 0 chr3 193575872 193575894 -33948684 + AT_rich Low_complexity Low_complexity 1 22 0 236 185 19 19 chr3 193576889 193576943 -33947635 - MARNA DNA Mariner -522 64 11 221 233 0 0 chr3 193577648 193577691 -33946887 + C-rich Low_complexity Low_complexity 6 48 0 25 65 0 0 chr3 193578568 193578614 -33945964 + AT_rich Low_complexity Low_complexity 1 46 0 536 312 11 32 chr3 193578817 193579003 -33945575 + MIR3 SINE MIR 4 185 -23 1022 202 96 14 chr3 193579082 193579364 -33945214 + MER33 DNA MER1_type 12 316 -8 24 85 0 0 chr3 193579709 193579768 -33944810 + AT_rich Low_complexity Low_complexity 1 59 0 27 0 0 0 chr3 193582254 193582281 -33942297 + AT_rich Low_complexity Low_complexity 1 27 0 284 226 11 32 chr3 193586373 193586466 -33938112 + A-rich Low_complexity Low_complexity 3 93 0 304 75 0 0 chr3 193588829 193588869 -33935709 - L1P LINE L1 -6013 133 94 312 133 0 0 chr3 193588891 193588951 -33935627 + (A)n Simple_repeat Simple_repeat 1 60 0 895 228 20 63 chr3 193590105 193590359 -33934219 - MIR SINE MIR -18 244 2 319 44 22 0 chr3 193590738 193590783 -33933795 - MADE1 DNA Mariner 0 80 35 22 0 0 0 chr3 193597022 193597044 -33927534 + AT_rich Low_complexity Low_complexity 1 22 0 2018 153 0 10 chr3 193597943 193598250 -33926328 - AluJb SINE Alu -8 304 1 5569 151 38 20 chr3 193598756 193600115 -33924463 + L1MA9 LINE L1 4775 6172 -140 246 32 0 0 chr3 193600115 193600146 -33924432 + (CA)n Simple_repeat Simple_repeat 2 32 0 5569 151 38 20 chr3 193600146 193600289 -33924289 + L1MA9 LINE L1 6172 6311 -1 508 288 71 28 chr3 193601307 193601519 -33923059 - MIR SINE MIR -10 252 32 622 101 91 0 chr3 193602172 193602271 -33922307 - L1MA2 LINE L1 0 6304 6197 195 317 97 23 chr3 193602271 193602396 -33922182 - MIR SINE MIR -95 167 33 279 157 0 0 chr3 193602467 193602518 -33922060 + (TTCA)n Simple_repeat Simple_repeat 3 53 0 1361 204 2 106 chr3 193602542 193602728 -33921850 + MLT1A2 LTR MaLR 1 122 -252 249 33 0 0 chr3 193602728 193602758 -33921820 + (TC)n Simple_repeat Simple_repeat 1 30 0 1361 204 2 106 chr3 193602758 193602988 -33921590 + MLT1A2 LTR MaLR 122 374 0 1317 198 52 52 chr3 193603351 193603659 -33920919 + AluJo SINE Alu 1 308 -4 218 365 27 0 chr3 193603686 193603760 -33920818 - L2 LINE L2 -257 3015 2940 13003 86 4 1 chr3 193603760 193606935 -33917643 + L1PA7 LINE L1 2975 6154 0 320 43 22 0 chr3 193606939 193606985 -33917593 + (GGAA)n Simple_repeat Simple_repeat 3 49 0 1352 43 0 5 chr3 193606989 193607199 -33917379 + (GAAA)n Simple_repeat Simple_repeat 1 209 0 244 324 44 22 chr3 193607227 193607363 -33917215 - L2 LINE L2 -811 2503 2365 211 352 0 0 chr3 193607430 193607484 -33917094 + L2 LINE L2 3210 3263 -9 202 284 81 0 chr3 193610542 193610616 -33913962 + L3 LINE CR1 1227 1306 -271 959 177 33 17 chr3 193611301 193611482 -33913096 + FRAM SINE Alu 1 176 0 274 311 122 27 chr3 193611484 193611632 -33912946 + L3 LINE CR1 1407 1568 -9 24 53 0 0 chr3 193612783 193612821 -33911757 + AT_rich Low_complexity Low_complexity 1 38 0 2088 139 0 3 chr3 193613418 193613721 -33910857 + AluSx SINE Alu 1 302 -10 391 277 164 40 chr3 193615065 193615419 -33909159 - L1ME4a LINE L1 -188 5933 5536 255 254 28 0 chr3 193618722 193618793 -33905785 + MIR3 SINE MIR 112 184 -24 375 298 31 75 chr3 193621083 193621244 -33903334 - L2 LINE L2 0 3272 3119 210 105 53 0 chr3 193622679 193622717 -33901861 + (TTG)n Simple_repeat Simple_repeat 3 42 0 249 353 25 17 chr3 193623780 193623899 -33900679 + L2 LINE L2 3145 3264 -8 533 230 0 96 chr3 193624417 193624552 -33900026 + L2 LINE L2 3192 3313 0 257 290 97 43 chr3 193624829 193624922 -33899656 + MIR SINE MIR 41 138 -70 1366 189 25 16 chr3 193624928 193625245 -33899333 + MER33 DNA MER1_type 5 324 0 1938 143 3 10 chr3 193625286 193625593 -33898985 + AluSx SINE Alu 1 305 -7 377 282 167 28 chr3 193627289 193627505 -33897073 - L2 LINE L2 -48 3265 3020 256 129 18 0 chr3 193627813 193627863 -33896715 + L1PA6 LINE L1 6095 6148 -6 336 346 44 89 chr3 193629991 193630473 -33894105 - L2 LINE L2 -1 3271 2812 1311 121 0 0 chr3 193631094 193631268 -33893310 + AluSg/x SINE Alu 124 297 -15 345 138 11 23 chr3 193633774 193633861 -33890717 + CT-rich Low_complexity Low_complexity 1 86 0 563 332 53 11 chr3 193634810 193635000 -33889578 + MIR3 SINE MIR 6 203 -5 371 224 54 68 chr3 193635200 193635347 -33889231 - MIR SINE MIR -16 246 102 2118 109 7 26 chr3 193635437 193635741 -33888837 - AluSg1 SINE Alu -8 301 4 200 239 60 75 chr3 193635965 193636032 -33888546 - L2 LINE L2 -2057 1257 1192 305 321 42 36 chr3 193637291 193637459 -33887119 + MIR SINE MIR 20 188 -74 337 269 67 19 chr3 193637656 193637760 -33886818 + MIR SINE MIR 46 154 -108 239 235 0 0 chr3 193639634 193639685 -33884893 + (TATG)n Simple_repeat Simple_repeat 2 52 0 1954 152 0 0 chr3 193640308 193640598 -33883980 + AluSx SINE Alu 3 292 -20 2194 132 0 0 chr3 193640601 193640911 -33883667 + AluSx SINE Alu 1 310 -2 34 42 0 0 chr3 193640911 193640959 -33883619 + AT_rich Low_complexity Low_complexity 1 48 0 24 0 0 0 chr3 193641239 193641263 -33883315 + AT_rich Low_complexity Low_complexity 1 24 0 28352 122 32 71 chr3 193641660 193645380 -33879198 + L1PA3 LINE L1 12 3423 -2731 7685 23 1 0 chr3 193645380 193646717 -33877861 + L1PA3 LINE L1 4817 6154 -1 28352 122 32 71 chr3 193646717 193648795 -33875783 + L1PA3 LINE L1 3423 5580 -574 211 350 0 0 chr3 193648987 193649047 -33875531 + L3 LINE CR1 1515 1574 -3 301 303 160 43 chr3 193651337 193651538 -33873040 + MIR SINE MIR 17 236 -26 610 217 136 0 chr3 193651618 193651778 -33872800 - MER5A DNA MER1_type -1 188 4 181 368 62 21 chr3 193652278 193652422 -33872156 - MIR3 SINE MIR -41 167 18 338 296 189 0 chr3 193654112 193654271 -33870307 - MIR SINE MIR -10 252 64 393 233 178 47 chr3 193654325 193654690 -33869888 + L1ME4a LINE L1 5706 6118 -3 24 0 0 0 chr3 193654832 193654856 -33869722 + AT_rich Low_complexity Low_complexity 1 24 0 443 244 142 8 chr3 193655465 193655592 -33868986 - MIR SINE MIR -12 250 107 1164 145 24 34 chr3 193656430 193656637 -33867941 + MLT1B LTR MaLR 6 210 -180 895 139 0 0 chr3 193656639 193656768 -33867810 + AluSg/x SINE Alu 145 273 -39 646 136 0 76 chr3 193656776 193656837 -33867741 + MLT1B LTR MaLR 282 331 -59 1784 142 58 21 chr3 193656837 193657162 -33867416 - MER1B DNA MER1_type 0 337 1 646 136 0 76 chr3 193657162 193657218 -33867360 + MLT1B LTR MaLR 331 390 0 207 324 19 48 chr3 193657460 193657565 -33867013 - L2 LINE L2 -35 3237 3136 390 336 9 0 chr3 193658018 193658131 -33866447 + L2 LINE L2 3156 3269 -3 307 303 11 74 chr3 193658290 193658465 -33866113 + MIR SINE MIR 59 222 -40 500 326 119 4 chr3 193660451 193660678 -33863900 - Charlie8 DNA MER1_type -2161 256 4 2134 120 3 0 chr3 193660761 193661053 -33863525 - AluSx SINE Alu -19 293 1 1996 123 4 0 chr3 193661782 193662058 -33862520 + AluSq SINE Alu 1 277 -36 253 89 0 36 chr3 193662058 193662114 -33862464 + (GAAA)n Simple_repeat Simple_repeat 1 54 0 893 140 17 11 chr3 193662132 193662311 -33862267 + GA-rich Low_complexity Low_complexity 1 180 0 290 298 96 10 chr3 193662334 193662438 -33862140 - MER5B DNA MER1_type 0 178 66 208 267 162 38 chr3 193662359 193662464 -33862114 + MER5A DNA MER1_type 43 160 -29 * 2247 109 3 0 chr3 193664841 193665145 -33859433 - AluSp SINE Alu -8 305 1 264 275 0 14 chr3 193665274 193665343 -33859235 + L2 LINE L2 3246 3313 0 265 349 77 12 chr3 193665699 193665868 -33858710 - MIR SINE MIR -82 180 1 731 296 69 0 chr3 193666563 193666779 -33857799 - MIR SINE MIR -28 234 4 696 226 18 6 chr3 193666938 193667106 -33857472 - LTR16C LTR ERVL -24 467 298 382 213 85 14 chr3 193667563 193667704 -33856874 + L1M4 LINE L1 5119 5269 -877 41 21 0 0 chr3 193667704 193667752 -33856826 + AT_rich Low_complexity Low_complexity 1 48 0 274 224 96 16 chr3 193667799 193667924 -33856654 + L1ME3A LINE L1 5135 5269 -877 44 35 0 0 chr3 193667924 193667982 -33856596 + AT_rich Low_complexity Low_complexity 1 58 0 851 266 200 20 chr3 193667982 193668523 -33856055 + L1ME3A LINE L1 5257 5894 -276 23 33 0 0 chr3 193668846 193668876 -33855702 + AT_rich Low_complexity Low_complexity 1 30 0 198 308 181 6 chr3 193668980 193669162 -33855416 - L2 LINE L2 -211 3061 2848 2067 126 3 25 chr3 193670310 193670493 -33854085 - AluSx SINE Alu 0 312 126 390 21 0 0 chr3 193670493 193670540 -33854038 + (TTTTG)n Simple_repeat Simple_repeat 1 47 0 2102 128 0 0 chr3 193670540 193670821 -33853757 - AluSx SINE Alu -31 281 1 2067 126 3 25 chr3 193670821 193670953 -33853625 - AluSx SINE Alu -184 128 3 324 232 85 0 chr3 193671513 193671595 -33852983 + L2 LINE L2 3176 3264 -8 2703 73 3 0 chr3 193672896 193673239 -33851339 + THE1A LTR MaLR 1 344 -11 11387 93 24 0 chr3 193673241 193674784 -33849794 + THE1A-int LTR MaLR 1 1580 0 2463 69 69 0 chr3 193674784 193675116 -33849462 + THE1A LTR MaLR 1 355 0 441 249 147 28 chr3 193675258 193675435 -33849143 - MIR SINE MIR -56 206 9 366 328 126 78 chr3 193676125 193676537 -33848041 - L2 LINE L2 -17 3255 2824 331 316 107 12 chr3 193676948 193677116 -33847462 - MIR SINE MIR -48 214 31 33 43 0 0 chr3 193680904 193680951 -33843627 + AT_rich Low_complexity Low_complexity 1 47 0 188 276 69 52 chr3 193681105 193681221 -33843357 - L2 LINE L2 -1 3271 3154 183 80 0 0 chr3 193681327 193681352 -33843226 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 344 237 53 111 chr3 193684537 193684727 -33839851 + Charlie8 DNA MER1_type 1 179 -2238 336 223 248 16 chr3 193685139 193685260 -33839318 + MER5A DNA MER1_type 12 160 -29 450 265 83 0 chr3 193689001 193689133 -33835445 - MIR3 SINE MIR 0 208 66 197 381 113 12 chr3 193690015 193690175 -33834403 - MIR3 SINE MIR -7 201 26 257 336 26 35 chr3 193691026 193691142 -33833436 + L2 LINE L2 3150 3264 -8 24 32 0 0 chr3 193692157 193692188 -33832390 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 193693544 193693566 -33831012 + AT_rich Low_complexity Low_complexity 1 22 0 1033 218 22 70 chr3 193693768 193694039 -33830539 + MIR SINE MIR 1 258 -4 21 0 0 0 chr3 193694039 193694060 -33830518 + AT_rich Low_complexity Low_complexity 1 21 0 505 244 114 0 chr3 193697033 193697156 -33827422 + L2 LINE L2 3136 3272 0 211 309 12 12 chr3 193697167 193697251 -33827327 + MIR SINE MIR 120 203 -59 343 351 47 66 chr3 193697566 193697885 -33826693 - L2 LINE L2 -45 3227 2915 1507 136 3 121 chr3 193699549 193699888 -33824690 - AluJo SINE Alu -3 299 1 929 101 0 0 chr3 193700663 193700801 -33823777 + L1MA3 LINE L1 6168 6305 0 631 135 10 0 chr3 193700897 193700993 -33823585 + FLAM_A SINE Alu 35 131 -11 1326 114 8 6 chr3 193701005 193701363 -33823215 + (GGAAA)n Simple_repeat Simple_repeat 1 360 0 273 319 32 51 chr3 193701685 193701842 -33822736 + MER5B DNA MER1_type 1 154 -24 2231 118 0 0 chr3 193702085 193702391 -33822187 + AluSc SINE Alu 1 306 -3 207 0 0 0 chr3 193702496 193702519 -33822059 + (TAGA)n Simple_repeat Simple_repeat 4 26 0 25 31 0 0 chr3 193703095 193703127 -33821451 + AT_rich Low_complexity Low_complexity 1 32 0 363 317 57 0 chr3 193703478 193703620 -33820958 - MIR SINE MIR -63 145 34 225 0 0 0 chr3 193705679 193705704 -33818874 + (TG)n Simple_repeat Simple_repeat 2 26 0 * 396 0 0 0 chr3 193705703 193705747 -33818831 + (TA)n Simple_repeat Simple_repeat 1 44 0 530 280 56 115 chr3 193707565 193707863 -33816715 - L2 LINE L2 -2 3270 3026 219 36 0 0 chr3 193707863 193707891 -33816687 + (TG)n Simple_repeat Simple_repeat 1 28 0 530 280 56 115 chr3 193707891 193708162 -33816416 - L2 LINE L2 -246 3026 2741 225 0 0 0 chr3 193708250 193708275 -33816303 + (A)n Simple_repeat Simple_repeat 1 25 0 445 255 176 10 chr3 193708413 193708617 -33815961 - MIR SINE MIR -5 257 20 1836 146 0 17 chr3 193709897 193710185 -33814393 + AluSx SINE Alu 30 312 0 207 0 0 0 chr3 193710262 193710285 -33814293 + (TG)n Simple_repeat Simple_repeat 2 24 0 2506 52 0 10 chr3 193710923 193711230 -33813348 - AluY SINE Alu -6 305 2 231 61 0 0 chr3 193711783 193711816 -33812762 + (TTTTTA)n Simple_repeat Simple_repeat 3 35 0 246 181 48 36 chr3 193712825 193712908 -33811670 + GA-rich Low_complexity Low_complexity 4 87 0 1983 145 0 0 chr3 193713585 193713892 -33810686 - AluSx SINE Alu 0 307 1 296 309 146 8 chr3 193714122 193714245 -33810333 - MIR3 SINE MIR -3 205 66 964 99 0 38 chr3 193714416 193714651 -33809927 + (TA)n Simple_repeat Simple_repeat 1 225 0 511 324 6 0 chr3 193715328 193715501 -33809077 + L1ME2 LINE L1 898 1071 -5345 24 0 0 0 chr3 193715552 193715576 -33809002 + AT_rich Low_complexity Low_complexity 1 24 0 387 322 39 10 chr3 193715668 193715876 -33808702 + L1ME2 LINE L1 1810 2023 -4584 473 319 78 7 chr3 193716202 193716438 -33808140 + L1ME2 LINE L1 2275 2521 -3905 649 244 136 89 chr3 193716485 193716914 -33807664 + L1ME2 LINE L1 2546 2953 -3473 1968 134 0 60 chr3 193716914 193717228 -33807350 + AluSx SINE Alu 1 295 -17 649 244 136 89 chr3 193717228 193717597 -33806981 + L1ME2 LINE L1 2953 3382 -3044 325 280 49 7 chr3 193717757 193717900 -33806678 + L1ME2 LINE L1 3625 3773 -2653 726 278 78 59 chr3 193718017 193718683 -33805895 + L1ME2 LINE L1 4863 5541 -885 759 302 59 44 chr3 193718746 193719319 -33805259 + L1ME2 LINE L1 5646 6227 -217 1061 247 127 0 chr3 193719569 193719828 -33804750 - AluJo SINE Alu -10 292 1 26 0 0 0 chr3 193720089 193720115 -33804463 + AT_rich Low_complexity Low_complexity 1 26 0 2089 112 7 0 chr3 193721351 193721637 -33802941 + AluSx SINE Alu 1 288 -24 195 220 60 20 chr3 193721829 193721879 -33802699 - L2 LINE L2 0 3272 3221 311 202 12 0 chr3 193722178 193722262 -33802316 + (TA)n Simple_repeat Simple_repeat 1 85 0 187 105 0 140 chr3 193723377 193723434 -33801144 - MER5B DNA MER1_type -104 74 26 813 246 119 12 chr3 193723629 193723881 -33800697 - L3b LINE CR1 -201 1382 1104 500 234 117 13 chr3 193724491 193724645 -33799933 + MIR SINE MIR 69 238 -24 279 328 105 54 chr3 193725786 193726008 -33798570 + L2 LINE L2 2410 2656 -658 2278 100 0 37 chr3 193726008 193726329 -33798249 - AluSx SINE Alu -3 309 1 279 328 105 54 chr3 193726329 193726438 -33798140 + L2 LINE L2 2656 2758 -556 22 56 0 0 chr3 193726911 193726947 -33797631 + AT_rich Low_complexity Low_complexity 1 36 0 286 269 80 85 chr3 193727534 193728238 -33796340 + L1MEd LINE L1 859 1654 -836 225 0 0 0 chr3 193728739 193728764 -33795814 + (A)n Simple_repeat Simple_repeat 1 25 0 407 296 96 36 chr3 193728794 193729044 -33795534 + HAL1 LINE L1 1504 1768 -739 21 57 0 0 chr3 193729451 193729486 -33795092 + AT_rich Low_complexity Low_complexity 1 35 0 25 0 0 0 chr3 193731218 193731243 -33793335 + AT_rich Low_complexity Low_complexity 1 25 0 400 273 16 8 chr3 193731797 193731918 -33792660 + LTR67 LTR ERVL 428 549 -8 435 320 72 11 chr3 193732396 193732577 -33792001 - MIR SINE MIR 0 262 71 378 0 0 0 chr3 193733542 193733584 -33790994 + (TG)n Simple_repeat Simple_repeat 2 43 0 1270 138 30 105 chr3 193734793 193735098 -33789480 - L1MA9 LINE L1 -3 6309 6028 192 77 0 0 chr3 193735993 193736019 -33788559 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 2663 36 3 0 chr3 193737042 193737351 -33787227 - AluY SINE Alu -1 310 1 240 122 0 0 chr3 193737893 193737934 -33786644 + (CA)n Simple_repeat Simple_repeat 2 42 0 28 0 0 0 chr3 193738072 193738100 -33786478 + AT_rich Low_complexity Low_complexity 1 28 0 2846 149 17 30 chr3 193738716 193739245 -33785333 - L1MB3 LINE L1 -1 6182 5661 364 340 21 28 chr3 193740675 193740819 -33783759 - MIR3 SINE MIR -35 173 31 2120 121 0 22 chr3 193740871 193741184 -33783394 + AluSx SINE Alu 1 306 -6 208 341 67 15 chr3 193741229 193741364 -33783214 - L3b LINE CR1 -321 1262 1121 334 241 24 0 chr3 193741985 193742068 -33782510 + L2 LINE L2 3229 3313 0 256 286 77 11 chr3 193744060 193744151 -33780427 + L2 LINE L2 3176 3272 0 205 355 200 19 chr3 193744783 193744938 -33779640 - MIR SINE MIR -77 185 3 21 36 0 0 chr3 193745196 193745224 -33779354 + AT_rich Low_complexity Low_complexity 1 28 0 244 365 26 9 chr3 193745971 193746086 -33778492 - MIR SINE MIR -141 121 5 184 236 0 55 chr3 193747161 193747216 -33777362 - L2 LINE L2 -41 3231 3180 2304 74 0 0 chr3 193747366 193747673 -33776905 + AluY SINE Alu 1 307 0 201 74 0 0 chr3 193747980 193748007 -33776571 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2295 124 16 32 chr3 193748059 193748429 -33776149 + THE1B LTR MaLR 1 364 0 249 321 36 0 chr3 193748611 193748695 -33775883 - MIR3 SINE MIR -1 207 121 861 249 117 66 chr3 193749256 193749709 -33774869 + MLT1K LTR MaLR 1 476 0 325 301 148 23 chr3 193750237 193750413 -33774165 + MIR SINE MIR 53 250 -12 855 188 32 16 chr3 193750959 193751145 -33773433 + MER5A DNA MER1_type 1 189 0 1845 166 58 0 chr3 193751165 193751490 -33773088 - MER2 DNA MER2_type 0 344 1 579 139 56 0 chr3 193753085 193753193 -33771385 + MER53 DNA DNA 3 116 -73 183 156 0 0 chr3 193753198 193753230 -33771348 + (TA)n Simple_repeat Simple_repeat 1 32 0 230 214 34 45 chr3 193753249 193753338 -33771240 - L1MC4 LINE L1 -1341 6701 6614 405 227 0 0 chr3 193753341 193753451 -33771127 + (TA)n Simple_repeat Simple_repeat 1 110 0 368 105 0 0 chr3 193753451 193753508 -33771070 + MER53 DNA DNA 129 185 -4 187 286 214 52 chr3 193753623 193753777 -33770801 - MIR SINE MIR -80 182 4 2269 91 7 3 chr3 193755135 193755433 -33769145 + AluSq SINE Alu 1 299 -14 346 305 40 103 chr3 193759225 193759589 -33764989 - L2 LINE L2 -1 3271 2931 333 293 35 75 chr3 193759589 193759763 -33764815 - MER5A DNA MER1_type 0 189 23 477 269 87 43 chr3 193760017 193760232 -33764346 + MIR SINE MIR 12 236 -26 328 309 83 28 chr3 193760846 193761027 -33763551 - MIR SINE MIR -70 192 2 303 319 22 51 chr3 193761273 193761411 -33763167 + MIR SINE MIR 10 143 -119 894 131 82 60 chr3 193761519 193761702 -33762876 - MER5A DNA MER1_type 0 189 3 373 308 8 0 chr3 193763778 193763898 -33760680 - MER94 DNA DNA -8 126 6 755 245 97 21 chr3 193764039 193764276 -33760302 - MIR SINE MIR -1 261 7 772 269 40 46 chr3 193764843 193765193 -33759385 + L2 LINE L2 2966 3313 0 401 193 235 29 chr3 193765207 193765363 -33759215 + MIR SINE MIR 68 252 -10 180 0 0 0 chr3 193765736 193765756 -33758822 + (T)n Simple_repeat Simple_repeat 1 20 0 422 244 20 92 chr3 193766272 193766447 -33758131 - MIR SINE MIR -63 145 16 787 218 0 35 chr3 193767348 193767518 -33757060 - MER5B DNA MER1_type -13 165 2 223 261 154 22 chr3 193767981 193768072 -33756506 + MIR SINE MIR 48 151 -57 547 296 156 7 chr3 193768929 193769237 -33755341 + L2 LINE L2 2481 2834 -480 212 335 190 25 chr3 193769472 193770024 -33754554 + L2 LINE L2 2251 2893 -421 195 195 0 0 chr3 193769990 193770031 -33754547 - L2 LINE L2 0 3313 3273 * 367 302 116 32 chr3 193770186 193770375 -33754203 + L2 LINE L2 2973 3177 -95 517 250 223 0 chr3 193770470 193770618 -33753960 - MER5A DNA MER1_type 0 189 9 21 57 0 0 chr3 193771562 193771597 -33752981 + AT_rich Low_complexity Low_complexity 1 35 0 1434 167 64 60 chr3 193772681 193772962 -33751616 + AluJo SINE Alu 1 282 -30 1786 112 0 8 chr3 193773270 193773512 -33751066 - AluSg/x SINE Alu -8 304 65 281 274 42 21 chr3 193773580 193773675 -33750903 + MIR SINE MIR 160 256 -6 1533 55 0 5 chr3 193773745 193773947 -33750631 - L1PA8 LINE L1 -507 5661 5461 3726 68 0 4 chr3 193773947 193774436 -33750142 + L1PA8 LINE L1 5681 6167 -5 311 276 11 11 chr3 193775824 193775911 -33748667 - MIR3 SINE MIR -39 169 83 218 105 26 0 chr3 193776096 193776134 -33748444 + GA-rich Low_complexity Low_complexity 2 40 0 2067 114 139 34 chr3 193776431 193776818 -33747760 + MSTA LTR MaLR 1 428 0 293 304 53 12 chr3 193776861 193776967 -33747611 + MIR SINE MIR 13 121 -87 1287 208 25 59 chr3 193776977 193777381 -33747197 + MLT1C LTR MaLR 1 390 -77 288 274 65 59 chr3 193778158 193778311 -33746267 - MIR SINE MIR -13 249 96 2455 90 7 0 chr3 193778350 193778660 -33745918 - AluSx SINE Alu 0 312 1 2534 7 0 0 chr3 193780204 193780480 -33744098 - AluYa5 SINE Alu -4 307 32 2994 158 53 7 chr3 193781003 193781592 -33742986 + L1MB7 LINE L1 5553 6168 -16 1059 242 45 12 chr3 193781804 193782048 -33742530 - MIR SINE MIR 0 262 11 270 328 70 43 chr3 193782088 193782274 -33742304 + MIR3 SINE MIR 17 207 -1 410 274 86 41 chr3 193782556 193782753 -33741825 - L2 LINE L2 -2 3311 3106 290 275 12 0 chr3 193782902 193782982 -33741596 + MLT1J1 LTR MaLR 1 81 -365 342 185 24 4 chr3 193783112 193783236 -33741342 + MLT1C LTR MaLR 411 582 -8 1802 161 3 63 chr3 193783939 193784318 -33740260 - MLT1B LTR MaLR -7 383 28 683 220 129 22 chr3 193784366 193784598 -33739980 + MLT1J1 LTR MaLR 65 321 -125 180 0 0 0 chr3 193785558 193785578 -33739000 + (TTCA)n Simple_repeat Simple_repeat 1 20 0 332 306 51 0 chr3 193785593 193785691 -33738887 - L2 LINE L2 -31 3241 3139 721 224 125 21 chr3 193786851 193787338 -33737240 + MLT1F1 LTR MaLR 1 567 0 21 36 0 0 chr3 193788372 193788400 -33736178 + AT_rich Low_complexity Low_complexity 1 28 0 356 58 0 19 chr3 193789366 193789418 -33735160 + (CA)n Simple_repeat Simple_repeat 2 52 0 226 308 248 0 chr3 193789979 193790112 -33734466 - MIR SINE MIR -50 212 47 24 0 0 0 chr3 193790518 193790542 -33734036 + AT_rich Low_complexity Low_complexity 1 24 0 21 89 0 0 chr3 193790781 193790837 -33733741 + AT_rich Low_complexity Low_complexity 1 56 0 321 287 146 36 chr3 193790965 193791240 -33733338 + L1ME4a LINE L1 5761 6065 -56 400 307 47 12 chr3 193791297 193791616 -33732962 + L1ME2 LINE L1 5269 5598 -564 531 288 31 19 chr3 193791628 193791885 -33732693 + L1ME2 LINE L1 5689 5948 -216 2221 109 23 3 chr3 193792213 193792517 -33732061 + AluSx SINE Alu 1 310 -2 2348 105 0 7 chr3 193793129 193793434 -33731144 + AluSq SINE Alu 1 303 -10 21 0 0 0 chr3 193794508 193794529 -33730049 + AT_rich Low_complexity Low_complexity 1 21 0 398 308 103 0 chr3 193795335 193795520 -33729058 - MIR SINE MIR -9 253 50 259 280 120 10 chr3 193795513 193795613 -33728965 + L2 LINE L2 3158 3268 -4 * 1843 157 40 27 chr3 193796236 193796606 -33727972 - THE1C LTR MaLR 0 375 1 224 264 277 0 chr3 193796833 193796988 -33727590 - MIR SINE MIR -4 258 61 244 326 21 75 chr3 193797584 193797771 -33726807 - MIR3 SINE MIR -6 202 26 306 282 171 35 chr3 193797885 193798055 -33726523 - MIR3 SINE MIR -11 197 5 5568 105 6 0 chr3 193798275 193799082 -33725496 + L1PA7 LINE L1 8 819 -5642 22961 86 10 6 chr3 193799085 193803337 -33721241 + L1PA7 LINE L1 2198 6466 -3 21 0 0 0 chr3 193805169 193805190 -33719388 + AT_rich Low_complexity Low_complexity 1 21 0 387 0 0 0 chr3 193807146 193807189 -33717389 + (CA)n Simple_repeat Simple_repeat 2 44 0 1021 233 31 35 chr3 193807365 193807623 -33716955 + MIR SINE MIR 4 260 -2 189 0 0 0 chr3 193807961 193807982 -33716596 + (TGAA)n Simple_repeat Simple_repeat 3 23 0 956 83 0 0 chr3 193810576 193810709 -33713869 - L1PB1 LINE L1 0 6151 6019 189 0 0 0 chr3 193811179 193811200 -33713378 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 226 222 0 0 chr3 193811768 193811813 -33712765 + CT-rich Low_complexity Low_complexity 2 46 0 267 218 26 26 chr3 193812630 193812708 -33711870 + A-rich Low_complexity Low_complexity 5 82 0 325 239 0 0 chr3 193813421 193813488 -33711090 + MIR SINE MIR 81 147 -61 240 167 0 0 chr3 193813795 193813843 -33710735 + CT-rich Low_complexity Low_complexity 2 49 0 432 202 91 0 chr3 193813996 193814095 -33710483 - AluJ SINE Alu -5 307 200 988 176 0 25 chr3 193814095 193814254 -33710324 - AluJ SINE Alu -157 155 1 2446 60 0 0 chr3 193814633 193814933 -33709645 + AluY SINE Alu 1 300 -11 360 329 137 37 chr3 193815184 193815534 -33709044 + L3b LINE CR1 1111 1495 -88 198 409 8 38 chr3 193815773 193815905 -33708673 + L2 LINE L2 3106 3233 -39 396 242 88 11 chr3 193816054 193816145 -33708433 + L2 LINE L2 3203 3300 -13 201 74 0 0 chr3 193816145 193816172 -33708406 + (TGAA)n Simple_repeat Simple_repeat 1 27 0 815 246 24 19 chr3 193817292 193817503 -33707075 - MIR SINE MIR 0 262 51 197 149 0 64 chr3 193817493 193817540 -33707038 - L2 LINE L2 -7 3306 3263 * 423 0 0 0 chr3 193817776 193817823 -33706755 + (CA)n Simple_repeat Simple_repeat 2 48 0 509 267 48 7 chr3 193819797 193819943 -33704635 + MIR3 SINE MIR 50 201 -7 226 343 29 9 chr3 193820940 193821045 -33703533 - MIR SINE MIR -30 232 126 180 152 0 0 chr3 193823164 193823197 -33701381 + (CA)n Simple_repeat Simple_repeat 2 34 0 236 238 16 56 chr3 193823200 193823326 -33701252 + (TA)n Simple_repeat Simple_repeat 2 122 0 699 165 0 0 chr3 193823424 193823539 -33701039 - FLAM_A SINE Alu -18 115 1 225 312 117 39 chr3 193823860 193824014 -33700564 - MER5A DNA MER1_type -23 166 1 2060 116 0 77 chr3 193824188 193824524 -33700054 + AluSx SINE Alu 3 312 0 733 211 80 6 chr3 193824732 193824907 -33699671 + MER5A DNA MER1_type 1 188 -1 183 42 0 0 chr3 193825228 193825252 -33699326 + (A)n Simple_repeat Simple_repeat 1 24 0 25 31 0 0 chr3 193825496 193825528 -33699050 + AT_rich Low_complexity Low_complexity 1 32 0 194 379 10 39 chr3 193828889 193828992 -33695586 + MIR3 SINE MIR 9 108 -100 2444 74 3 0 chr3 193829583 193829880 -33694698 + AluSc SINE Alu 1 298 -11 2089 136 0 0 chr3 193830327 193830621 -33693957 - AluSx SINE Alu -18 294 1 1137 145 36 59 chr3 193832804 193833025 -33691553 - MER20 DNA MER1_type -3 216 1 549 220 0 9 chr3 193833433 193833542 -33691036 + Tigger3(Golem) DNA MER2_type 1 108 -2921 * 3148 129 126 15 chr3 193833533 193834190 -33690388 + Tigger3(Golem) DNA MER2_type 2278 3007 -22 477 122 0 0 chr3 193834572 193834646 -33689932 + (TC)n Simple_repeat Simple_repeat 1 74 0 355 235 0 0 chr3 193834712 193834780 -33689798 - MIR3 SINE MIR -48 160 93 234 295 93 22 chr3 193835544 193835683 -33688895 - L3 LINE CR1 -223 1354 1206 2171 125 13 3 chr3 193836480 193836784 -33687794 + AluSx SINE Alu 1 307 -5 185 233 50 0 chr3 193836833 193836881 -33687697 - MIR SINE MIR -22 240 187 977 265 47 53 chr3 193836881 193837391 -33687187 - MLT1J LTR MaLR -2 509 3 185 233 50 0 chr3 193837391 193837402 -33687176 - MIR SINE MIR -75 187 178 21 57 0 0 chr3 193837424 193837459 -33687119 + AT_rich Low_complexity Low_complexity 1 35 0 238 343 40 0 chr3 193837513 193837612 -33686966 - MIR SINE MIR -154 108 6 22 0 0 0 chr3 193840482 193840504 -33684074 + AT_rich Low_complexity Low_complexity 1 22 0 202 194 0 0 chr3 193840690 193840726 -33683852 + (ATG)n Simple_repeat Simple_repeat 1 36 0 643 227 15 79 chr3 193840726 193840849 -33683729 - MIR SINE MIR -1 261 154 270 0 0 0 chr3 193840849 193840879 -33683699 + (TG)n Simple_repeat Simple_repeat 2 31 0 643 227 15 79 chr3 193840879 193840958 -33683620 - MIR SINE MIR -108 154 72 609 198 35 0 chr3 193841135 193841251 -33683327 + L2 LINE L2 3194 3313 0 274 263 218 23 chr3 193841344 193841477 -33683101 - MER5A DNA MER1_type -1 188 30 22 35 0 0 chr3 193842012 193842041 -33682537 + AT_rich Low_complexity Low_complexity 1 29 0 1180 173 0 56 chr3 193842255 193842486 -33682092 - MER20 DNA MER1_type 0 219 2 340 239 80 0 chr3 193844122 193844210 -33680368 - L2 LINE L2 -4 3268 3174 246 181 28 14 chr3 193844437 193844509 -33680069 + CT-rich Low_complexity Low_complexity 1 73 0 456 234 75 0 chr3 193845067 193845174 -33679404 - FLAM_A SINE Alu -17 116 2 486 262 223 10 chr3 193845230 193845436 -33679142 + MIR SINE MIR 1 250 -12 301 321 46 30 chr3 193845579 193845710 -33678868 + L2 LINE L2 3139 3271 -1 1966 135 27 7 chr3 193846694 193846990 -33677588 - AluSx SINE Alu -10 302 1 23 54 0 0 chr3 193847579 193847616 -33676962 + AT_rich Low_complexity Low_complexity 1 37 0 475 202 221 6 chr3 193847701 193847839 -33676739 - MER5A DNA MER1_type -13 176 4 248 347 82 14 chr3 193848453 193848600 -33675978 - MIR SINE MIR -55 207 51 2258 93 7 7 chr3 193848727 193849029 -33675549 + AluSc SINE Alu 1 302 -7 24 0 0 0 chr3 193850127 193850151 -33674427 + AT_rich Low_complexity Low_complexity 1 24 0 418 293 0 8 chr3 193851322 193851445 -33673133 + MIR3 SINE MIR 81 202 -6 647 266 44 35 chr3 193851530 193851733 -33672845 + MIR SINE MIR 47 251 -11 2182 113 0 0 chr3 193851825 193852135 -33672443 + AluSx SINE Alu 1 310 0 807 171 0 0 chr3 193852425 193852554 -33672024 - FLAM_C SINE Alu -2 141 13 270 0 0 0 chr3 193852719 193852749 -33671829 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2181 110 0 0 chr3 193852752 193853034 -33671544 - AluSx SINE Alu -30 282 1 1763 115 93 11 chr3 193853285 193853554 -33671024 - AluSq SINE Alu -20 293 3 468 255 39 51 chr3 193853554 193853809 -33670769 - L1MC4 LINE L1 -101 7941 7690 1963 178 43 9 chr3 193853983 193854428 -33670150 + L1 LINE L1 4944 5403 -743 195 195 0 0 chr3 193855836 193855877 -33668701 - L2 LINE L2 0 3313 3273 813 236 53 42 chr3 193856051 193856335 -33668243 + MLT1G LTR MaLR 2 288 -302 3159 112 0 0 chr3 193856456 193856929 -33667649 + L1P LINE L1 3373 3845 -2301 4553 40 7 0 chr3 193856932 193857674 -33666904 + L1P2 LINE L1 4800 5545 -610 7152 40 5 6 chr3 193857792 193858750 -33665828 + L1P LINE L1 3650 4606 -1540 189 0 0 0 chr3 193859183 193859204 -33665374 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 2313 92 0 10 chr3 193859508 193859812 -33664766 - AluSq SINE Alu -12 301 1 278 226 0 0 chr3 193860210 193860263 -33664315 + MIR SINE MIR 1 53 -209 21 0 0 0 chr3 193860297 193860318 -33664260 + AT_rich Low_complexity Low_complexity 1 21 0 281 167 0 0 chr3 193860965 193861007 -33663571 + 5S rRNA rRNA 1 42 -79 327 65 0 0 chr3 193861214 193861260 -33663318 + (CA)n Simple_repeat Simple_repeat 2 47 0 219 186 0 0 chr3 193862454 193862497 -33662081 + A-rich Low_complexity Low_complexity 1 43 0 210 157 0 59 chr3 193864231 193864282 -33660296 + T-rich Low_complexity Low_complexity 2 49 0 272 249 87 138 chr3 193865895 193866308 -33658270 - L2 LINE L2 -16 3256 2865 23 33 0 0 chr3 193867860 193867890 -33656688 + AT_rich Low_complexity Low_complexity 1 30 0 1115 194 5 54 chr3 193867890 193868112 -33656466 - AluJo SINE Alu -31 281 71 319 114 0 0 chr3 193868299 193868343 -33656235 - Alu SINE Alu -255 44 1 752 248 186 0 chr3 193868599 193868873 -33655705 + MER113 DNA MER1_type? 2 326 -195 2644 31 0 0 chr3 193868884 193869175 -33655403 - L1PA3 LINE L1 -4 6151 5861 21 0 0 0 chr3 193869608 193869629 -33654949 + AT_rich Low_complexity Low_complexity 1 21 0 188 292 31 15 chr3 193869833 193869898 -33654680 - MIR SINE MIR -62 146 81 * 247 272 70 44 chr3 193869887 193870001 -33654577 - MIR3 SINE MIR -9 199 83 264 30 0 0 chr3 193871656 193871689 -33652889 + (CA)n Simple_repeat Simple_repeat 1 33 0 774 241 110 0 chr3 193872525 193872716 -33651862 + MIR SINE MIR 13 224 -38 210 143 0 0 chr3 193872723 193872758 -33651820 + (TTA)n Simple_repeat Simple_repeat 2 36 0 927 328 153 5 chr3 193873098 193873732 -33650846 - L3 LINE CR1 -444 1133 406 842 259 145 41 chr3 193874378 193874819 -33649759 + MLT1F LTR MaLR 43 529 -13 194 286 20 0 chr3 193875433 193875482 -33649096 - L2 LINE L2 -259 3054 3005 329 303 12 14 chr3 193876282 193876420 -33648158 + MLT1I LTR MaLR 69 206 -203 243 314 16 90 chr3 193876440 193876628 -33647950 + MLT1J2 LTR MaLR 275 448 -2 420 327 153 34 chr3 193876667 193877052 -33647526 + MLT1K LTR MaLR 139 569 -19 615 251 134 52 chr3 193877247 193877478 -33647100 - MLT1I LTR MaLR 0 409 160 41 36 0 0 chr3 193877557 193877612 -33646966 + AT_rich Low_complexity Low_complexity 1 55 0 260 321 176 0 chr3 193878051 193878216 -33646362 - MIR SINE MIR -45 217 24 574 274 65 24 chr3 193879062 193879230 -33645348 - MIR SINE MIR -50 212 38 622 71 0 0 chr3 193879808 193879892 -33644686 + Alu SINE Alu 222 305 -4 2105 121 0 0 chr3 193881644 193881976 -33642602 - AluSx SINE Alu 0 332 1 445 200 180 0 chr3 193883297 193883397 -33641181 - MER5B DNA MER1_type -60 118 1 1734 26 0 0 chr3 193883443 193883637 -33640941 - L1PA6 LINE L1 -281 5873 5680 1882 55 63 0 chr3 193883637 193883734 -33640844 + L1PA5 LINE L1 5900 5989 -165 189 0 0 0 chr3 193883734 193883755 -33640823 + (AGGGGG)n Simple_repeat Simple_repeat 2 22 0 1882 55 63 0 chr3 193883755 193883893 -33640685 + L1PA5 LINE L1 5989 6152 -2 356 282 98 12 chr3 193884617 193884780 -33639798 + MIR SINE MIR 51 227 -35 433 222 11 0 chr3 193884806 193884896 -33639682 - MIR SINE MIR -112 150 60 328 282 73 16 chr3 193885216 193885340 -33639238 - MIR SINE MIR -97 165 35 751 140 0 0 chr3 193886601 193886708 -33637870 + AluJb SINE Alu 6 112 -200 1117 95 0 0 chr3 193886708 193886856 -33637722 + AluSp/q SINE Alu 164 311 -2 317 258 28 22 chr3 193888251 193888402 -33636176 + L1ME4a LINE L1 5723 5885 -236 2687 166 10 16 chr3 193888407 193888900 -33635678 - L1 LINE L1 -1976 4170 3681 2029 129 39 3 chr3 193888902 193889211 -33635367 + L1PB1 LINE L1 5832 6151 0 670 230 150 10 chr3 193891123 193891323 -33633255 - MIR SINE MIR -13 249 22 261 0 0 0 chr3 193892232 193892261 -33632317 + (CA)n Simple_repeat Simple_repeat 2 30 0 843 236 60 9 chr3 193892414 193892647 -33631931 + Charlie8 DNA MER1_type 31 275 -2142 186 183 133 67 chr3 193892762 193892822 -33631756 - MIR3 SINE MIR -49 159 96 384 288 151 0 chr3 193893266 193893405 -33631173 - MIR SINE MIR -7 255 96 243 146 0 0 chr3 193896490 193896531 -33628047 + (A)n Simple_repeat Simple_repeat 1 41 0 297 0 0 0 chr3 193896858 193896891 -33627687 + (T)n Simple_repeat Simple_repeat 1 33 0 26 0 0 0 chr3 193897726 193897752 -33626826 + AT_rich Low_complexity Low_complexity 1 26 0 205 268 28 0 chr3 193898689 193898760 -33625818 + C-rich Low_complexity Low_complexity 4 76 0 579 289 113 82 chr3 193899581 193900229 -33624349 + L1M2 LINE L1 475 1142 -5707 198 0 0 0 chr3 193900476 193900498 -33624080 + (CCCCCA)n Simple_repeat Simple_repeat 3 24 0 777 153 17 0 chr3 193900872 193901048 -33623530 + CT-rich Low_complexity Low_complexity 1 179 0 21 36 0 0 chr3 193901215 193901243 -33623335 + GC_rich Low_complexity Low_complexity 1 28 0 221 234 0 0 chr3 193901557 193901604 -33622974 + (CTG)n Simple_repeat Simple_repeat 2 48 0 222 171 0 0 chr3 193903203 193903244 -33621334 + A-rich Low_complexity Low_complexity 1 41 0 200 108 0 27 chr3 193903865 193903902 -33620676 + (TTTTC)n Simple_repeat Simple_repeat 3 38 0 539 186 233 8 chr3 193907018 193907136 -33617442 - MER5A DNA MER1_type -1 188 42 373 229 29 19 chr3 193907136 193907241 -33617337 + MER5A DNA MER1_type 1 106 -83 669 311 29 5 chr3 193907886 193908092 -33616486 + MIR SINE MIR 40 250 -12 183 129 0 0 chr3 193908145 193908176 -33616402 + (TG)n Simple_repeat Simple_repeat 1 31 0 221 0 35 0 chr3 193908372 193908401 -33616177 + (GA)n Simple_repeat Simple_repeat 1 30 0 2160 117 3 0 chr3 193908432 193908753 -33615825 - AluSx SINE Alu 0 322 1 1778 148 65 7 chr3 193910111 193910389 -33614189 + AluJo SINE Alu 1 294 -18 215 384 80 19 chr3 193910954 193911217 -33613361 - L2 LINE L2 -342 2972 2694 1562 280 49 77 chr3 193911488 193911940 -33612638 - L1MEd LINE L1 -4862 1257 794 1966 153 7 0 chr3 193911940 193912241 -33612337 - AluSx SINE Alu -9 303 1 1562 280 49 77 chr3 193912241 193912312 -33612266 - L1MEd LINE L1 -5325 794 723 2173 98 10 20 chr3 193912312 193912618 -33611960 - AluSp SINE Alu -10 303 1 1562 280 49 77 chr3 193912618 193913136 -33611442 - L1MEd LINE L1 -5396 723 244 442 318 88 0 chr3 193913655 193913825 -33610753 - MIR SINE MIR -3 259 75 265 240 13 13 chr3 193913830 193913905 -33610673 + MER116 DNA Mariner 6 80 0 1787 42 0 0 chr3 193914035 193914249 -33610329 - L1PA3 LINE L1 0 6155 5942 352 311 131 0 chr3 193914314 193914436 -33610142 + L2 LINE L2 3134 3271 -1 1515 219 126 103 chr3 193914521 193915053 -33609525 + MLT1G LTR MaLR 2 587 -8 437 275 57 36 chr3 193915869 193916062 -33608516 + LTR67 LTR ERVL 353 549 -8 24 111 0 0 chr3 193916295 193916403 -33608175 + AT_rich Low_complexity Low_complexity 1 108 0 2032 146 0 3 chr3 193916581 193916883 -33607695 + AluSx SINE Alu 1 301 -11 41080 30 21 1 chr3 193916904 193922934 -33601644 + L1PA2 LINE L1 2 6155 0 664 181 0 14 chr3 193923079 193923217 -33601361 + L1PA15 LINE L1 6027 6162 -3 199 250 316 0 chr3 193923348 193923424 -33601154 - MIR SINE MIR -59 149 50 189 0 0 0 chr3 193924857 193924878 -33599700 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 552 311 7 7 chr3 193925335 193925483 -33599095 + MER5B DNA MER1_type 3 150 -28 * 1040 311 60 93 chr3 193925464 193926467 -33598111 + L2 LINE L2 883 1852 -1462 876 328 133 19 chr3 193926486 193927211 -33597367 + L2 LINE L2 2303 3131 -182 877 74 0 0 chr3 193927320 193927428 -33597150 + AluSq/x SINE Alu 1 108 -204 2181 109 0 0 chr3 193927451 193927759 -33596819 + AluSg SINE Alu 1 308 0 319 264 108 92 chr3 193929085 193929539 -33595039 - MLT1J LTR MaLR -50 461 1 215 268 18 18 chr3 193929642 193929698 -33594880 - L2 LINE L2 -218 3054 2999 362 290 104 27 chr3 193929774 193930071 -33594507 - MLT1K LTR MaLR -87 501 139 2082 104 45 7 chr3 193930507 193930796 -33593782 + AluSq SINE Alu 1 300 -13 521 284 117 43 chr3 193931573 193931967 -33592611 + MLT1L LTR MaLR 1 423 -192 255 31 0 0 chr3 193932736 193932768 -33591810 + (CA)n Simple_repeat Simple_repeat 1 32 0 1704 166 32 14 chr3 193932999 193933282 -33591296 - AluJb SINE Alu -19 293 6 1584 160 121 21 chr3 193933446 193933777 -33590801 - MLT1A1 LTR MaLR -1 364 1 241 354 26 71 chr3 193934127 193934435 -33590143 - L2 LINE L2 -338 2976 2683 1024 242 196 11 chr3 193934561 193934908 -33589670 + LTR16C LTR ERVL 73 483 -8 365 335 62 31 chr3 193934996 193935253 -33589325 - L2 LINE L2 -818 2496 2232 1231 187 0 20 chr3 193937907 193938153 -33586425 + L1PB4 LINE L1 5904 6144 -12 432 239 225 90 chr3 193938354 193938576 -33586002 - MIR SINE MIR -6 256 5 358 288 21 52 chr3 193938791 193938982 -33585596 - MLT1L LTR MaLR 0 615 431 391 343 133 6 chr3 193939196 193939520 -33585058 + LTR16A LTR ERVL 86 450 0 441 278 165 29 chr3 193940150 193940423 -33584155 + MLT1K LTR MaLR 215 524 -64 329 250 9 46 chr3 193941088 193941196 -33583382 - L1MC4a LINE L1 -1634 6174 6071 1318 219 87 13 chr3 193941226 193941579 -33582999 - MLT1E3 LTR MaLR 0 624 216 492 182 9 36 chr3 193941588 193941698 -33582880 - MLT1E3 LTR MaLR -547 107 1 537 235 190 111 chr3 193941737 193942142 -33582436 - L1MC4a LINE L1 -1835 5973 5537 248 217 100 33 chr3 193942160 193942280 -33582298 - L1MC4a LINE L1 -2379 5429 5302 12526 39 1 1 chr3 193942473 193944781 -33579797 + L1PA5 LINE L1 3839 6145 -9 26 0 0 0 chr3 193944781 193944807 -33579771 + AT_rich Low_complexity Low_complexity 1 26 0 1382 208 72 49 chr3 193945376 193945618 -33578960 - L1ME1 LINE L1 -18 6082 5824 2090 178 19 3 chr3 193945618 193945977 -33578601 + MLT1A1 LTR MaLR 1 365 0 1382 208 72 49 chr3 193945977 193946163 -33578415 - L1ME1 LINE L1 -276 5824 5644 548 223 174 25 chr3 193946177 193946419 -33578159 - L1ME1 LINE L1 -1686 4394 4117 1531 122 4 0 chr3 193946428 193946666 -33577912 - Tigger5 DNA MER2_type 0 2323 2085 273 236 0 0 chr3 193948013 193948068 -33576510 - Tigger5 DNA MER2_type -2261 62 8 5464 233 62 67 chr3 193948069 193948712 -33575866 - L1ME1 LINE L1 -1968 4112 3467 1711 158 43 16 chr3 193948712 193949016 -33575562 - AluJb SINE Alu 0 312 1 5464 233 62 67 chr3 193949016 193949332 -33575246 - L1ME1 LINE L1 -2613 3467 3151 1844 214 39 28 chr3 193949332 193949789 -33574789 - LTR40b LTR ERVL 0 462 1 5464 233 62 67 chr3 193949789 193950396 -33574182 - L1ME1 LINE L1 -2929 3151 2542 243 200 0 0 chr3 193950396 193950441 -33574137 + U6 snRNA snRNA 1 45 -62 5464 233 62 67 chr3 193950441 193950835 -33573743 - L1ME1 LINE L1 -3538 2542 2147 2641 61 0 0 chr3 193950835 193951146 -33573432 - AluY SINE Alu 0 311 1 5464 233 62 67 chr3 193951146 193951683 -33572895 - L1ME1 LINE L1 -3933 2147 1608 745 176 17 0 chr3 193951683 193951802 -33572776 - FLAM_A SINE Alu -11 122 2 5464 233 62 67 chr3 193951802 193953011 -33571567 - L1ME1 LINE L1 -4472 1608 405 5117 52 1 1 chr3 193953472 193954160 -33570418 - L1PA5 LINE L1 -2193 3953 3266 11351 51 6 0 chr3 193954160 193956362 -33568216 + L1PA5 LINE L1 3942 6151 -3 235 327 0 0 chr3 193956402 193956457 -33568121 - L2 LINE L2 -5 3308 3254 2356 113 6 6 chr3 193956703 193957048 -33567530 - L1PA10 LINE L1 -10 6158 5814 4570 55 2 0 chr3 193957048 193957606 -33566972 - L1PA6 LINE L1 -1 6153 5589 866 65 0 0 chr3 193957606 193957713 -33566865 - U6 snRNA snRNA 0 107 1 5046 105 5 20 chr3 193957717 193959065 -33565513 - L1PA10 LINE L1 -343 5825 4502 25 31 0 0 chr3 193959487 193959519 -33565059 + AT_rich Low_complexity Low_complexity 1 32 0 319 284 0 11 chr3 193959557 193959645 -33564933 + MIR SINE MIR 67 153 -109 1676 180 3 14 chr3 193960608 193960897 -33563681 + AluJo SINE Alu 1 286 -26 237 33 0 0 chr3 193960897 193960927 -33563651 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 6134 157 8 19 chr3 193961013 193962325 -33562253 + L1MC1 LINE L1 5033 6327 -6 14615 150 27 18 chr3 193962472 193965478 -33559100 - L1MA3 LINE L1 0 7724 4746 213 39 0 0 chr3 193965478 193965504 -33559074 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1601 180 7 21 chr3 193965505 193965788 -33558790 - AluJo SINE Alu -33 279 1 14615 150 27 18 chr3 193965788 193967693 -33556885 - L1MA3 LINE L1 -2978 4746 2762 1679 159 50 32 chr3 193967693 193967976 -33556602 - AluJb SINE Alu -24 288 1 14615 150 27 18 chr3 193967976 193968436 -33556142 - L1MA3 LINE L1 -4962 2762 2308 1407 236 20 3 chr3 193968434 193968731 -33555847 + L1M1 LINE L1 1376 1677 -5888 * 1535 109 4 0 chr3 193968730 193968977 -33555601 + L1M1 LINE L1 1992 2239 -5326 2529 40 0 3 chr3 193969461 193969761 -33554817 + AluY SINE Alu 1 299 -12 764 154 88 7 chr3 193971371 193971540 -33553038 - FRAM SINE Alu 0 184 5 199 237 132 53 chr3 193971963 193972039 -33552539 - L2 LINE L2 -15 3257 3176 186 167 0 0 chr3 193972088 193972124 -33552454 + GA-rich Low_complexity Low_complexity 1 36 0 2193 84 0 17 chr3 193972263 193972561 -33552017 + AluSx SINE Alu 1 293 -19 727 78 129 0 chr3 193974111 193974227 -33550351 + MER85 DNA T2_type 5 135 -4 1740 111 68 14 chr3 193974832 193975112 -33549466 - AluSx SINE Alu -11 301 7 323 273 0 83 chr3 193975601 193975733 -33548845 - MIR SINE MIR -72 136 16 2555 233 62 5 chr3 193975923 193976541 -33548037 + MER82 DNA MER2_type 1 653 0 237 235 0 24 chr3 193977313 193977398 -33547180 - Charlie8 DNA MER1_type -2261 156 74 353 263 57 70 chr3 193977429 193977756 -33546822 + MER77 LTR ERV1 24 352 -253 310 218 100 6 chr3 193977938 193978066 -33546512 + MER77 LTR ERV1 503 612 -7 22 0 0 0 chr3 193978334 193978356 -33546222 + AT_rich Low_complexity Low_complexity 1 22 0 187 284 142 30 chr3 193978687 193978821 -33545757 + MIR SINE MIR 60 208 -54 364 299 147 25 chr3 193979719 193979876 -33544702 - MIR SINE MIR -50 212 37 21 0 0 0 chr3 193979914 193979935 -33544643 + AT_rich Low_complexity Low_complexity 1 21 0 541 110 12 0 chr3 193980396 193980478 -33544100 - AluJ/FRAM SINE Alu -16 296 214 228 86 0 0 chr3 193980478 193980513 -33544065 + Alu SINE Alu 44 78 -97 602 161 48 40 chr3 193980614 193980738 -33543840 - AluJo SINE Alu -145 167 43 559 304 70 39 chr3 193980738 193980768 -33543810 + L2 LINE L2 2568 2596 -718 2329 105 7 0 chr3 193980768 193981074 -33543504 - AluSx SINE Alu -4 308 1 559 304 70 39 chr3 193981074 193981300 -33543278 + L2 LINE L2 2596 2832 -482 2538 70 3 3 chr3 193981300 193981642 -33542936 + THE1A LTR MaLR 14 355 0 536 265 273 14 chr3 193981644 193982010 -33542568 + L2 LINE L2 2851 3311 -2 480 280 77 28 chr3 193982151 193982515 -33542063 - L1ME4a LINE L1 -128 5993 5612 304 297 76 56 chr3 193983185 193983434 -33541144 + MLT1K LTR MaLR 335 588 0 2121 120 7 13 chr3 193983852 193984152 -33540426 + AluSx SINE Alu 1 298 -14 1129 75 0 0 chr3 193984655 193984788 -33539790 + AluSq/x SINE Alu 1 133 -180 1211 116 64 0 chr3 193984828 193985001 -33539577 + AluSp SINE Alu 130 313 0 276 290 40 68 chr3 193985759 193985935 -33538643 - L2 LINE L2 -12 3260 3090 440 295 236 19 chr3 193986030 193986450 -33538128 - L2 LINE L2 -1423 1891 1381 2171 103 0 0 chr3 193986838 193987163 -33537415 + AluSx SINE Alu 1 325 0 495 290 21 36 chr3 193987267 193987460 -33537118 + MIR SINE MIR 20 209 -53 2051 116 22 0 chr3 193987635 193987972 -33536606 + AluSx SINE Alu 1 343 0 252 198 45 171 chr3 193988125 193988252 -33536326 + MLT1L LTR MaLR 422 563 -52 1904 164 0 3 chr3 193988252 193988550 -33536028 - AluSx SINE Alu -15 297 1 1599 159 39 18 chr3 193988556 193988839 -33535739 - AluJo SINE Alu -13 299 11 252 198 45 171 chr3 193988839 193988926 -33535652 + MLT1L LTR MaLR 568 615 0 259 323 42 10 chr3 193989886 193989982 -33534596 - MIR SINE MIR -153 109 11 2331 208 28 11 chr3 193990047 193990576 -33534002 + L1MD2 LINE L1 5584 6121 -238 660 225 7 0 chr3 193990592 193990743 -33533835 + L1MD2 LINE L1 6195 6346 -13 225 331 179 19 chr3 193990774 193991082 -33533496 + L2 LINE L2 2383 2739 -575 226 374 58 14 chr3 193991836 193991975 -33532603 + L2 LINE L2 3128 3272 0 2485 14 7 7 chr3 193992745 193993067 -33531511 + AluYb8 SINE Alu 1 322 0 2201 139 0 0 chr3 193994888 193995197 -33529381 - AluSx SINE Alu -1 311 3 21 0 0 0 chr3 193995295 193995316 -33529262 + AT_rich Low_complexity Low_complexity 1 21 0 2300 97 3 0 chr3 193995316 193995614 -33528964 + AluSx SINE Alu 1 299 -13 2317 76 0 13 chr3 193996973 193997287 -33527291 - AluY SINE Alu -1 310 1 207 0 0 0 chr3 193997533 193997556 -33527022 + (TA)n Simple_repeat Simple_repeat 1 23 0 1570 128 133 0 chr3 193997578 193997827 -33526751 - AluSx SINE Alu -30 282 1 52 0 0 0 chr3 193998349 193998401 -33526177 + AT_rich Low_complexity Low_complexity 1 52 0 1992 95 0 0 chr3 193998579 193998831 -33525747 - AluSx SINE Alu -16 296 45 216 225 200 25 chr3 193999431 193999511 -33525067 - MIR SINE MIR -157 105 12 270 0 0 0 chr3 193999599 193999629 -33524949 + (T)n Simple_repeat Simple_repeat 1 30 0 1622 164 51 20 chr3 193999776 194000068 -33524510 + AluJb SINE Alu 1 301 -11 24 0 0 0 chr3 194000130 194000154 -33524424 + AT_rich Low_complexity Low_complexity 1 24 0 1713 89 20 0 chr3 194000166 194000413 -33524165 - L1MA1 LINE L1 -4 6298 6047 5090 127 42 10 chr3 194000439 194002206 -33522372 - L1MA1 LINE L1 -221 6081 4257 7173 45 9 0 chr3 194002220 194003399 -33521179 - L1PA6 LINE L1 -4 6150 4966 5122 135 3 28 chr3 194003407 194004332 -33520246 - L1P LINE L1 -743 5403 4502 25 31 0 0 chr3 194004754 194004786 -33519792 + AT_rich Low_complexity Low_complexity 1 32 0 319 284 0 11 chr3 194004824 194004912 -33519666 + MIR SINE MIR 67 153 -109 1676 180 3 14 chr3 194005875 194006164 -33518414 + AluJo SINE Alu 1 286 -26 237 33 0 0 chr3 194006164 194006194 -33518384 + (TTAA)n Simple_repeat Simple_repeat 3 32 0 6107 157 8 19 chr3 194006280 194007592 -33516986 + L1MC1 LINE L1 5033 6327 -6 14615 157 29 12 chr3 194007739 194010745 -33513833 - L1MA3 LINE L1 0 7724 4770 213 39 0 0 chr3 194010745 194010771 -33513807 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 1601 180 7 21 chr3 194010772 194011055 -33513523 - AluJo SINE Alu -33 279 1 14615 157 29 12 chr3 194011055 194012945 -33511633 - L1MA3 LINE L1 -2953 4771 2748 1679 159 50 32 chr3 194012960 194013243 -33511335 - AluJb SINE Alu -24 288 1 3057 80 2 0 chr3 194013243 194013703 -33510875 - L1MA3 LINE L1 -4797 2768 2308 1407 236 20 3 chr3 194013701 194013998 -33510580 + L1 LINE L1 1376 1677 -5888 * 7706 86 6 2 chr3 194013997 194015146 -33509432 + L1 LINE L1 1992 3145 -4420 693 120 0 0 chr3 194015159 194015259 -33509319 + AluSc SINE Alu 1 100 -209 914 122 0 0 chr3 194015259 194015415 -33509163 + L1 LINE L1 5984 6139 -1426 6329 52 0 0 chr3 194015468 194016291 -33508287 - L1P LINE L1 -1382 4764 3942 * 9022 47 0 12 chr3 194016289 194017497 -33507081 + L1P LINE L1 3264 4456 -1690 394 161 32 0 chr3 194018371 194018526 -33506052 + (TA)n Simple_repeat Simple_repeat 2 161 0 509 173 4 27 chr3 194018549 194019107 -33505471 + (TA)n Simple_repeat Simple_repeat 1 544 0 375 144 11 39 chr3 194019140 194019320 -33505258 + (TA)n Simple_repeat Simple_repeat 2 176 0 23 33 0 0 chr3 194019324 194019354 -33505224 + AT_rich Low_complexity Low_complexity 1 30 0 5905 40 9 5 chr3 194019585 194020588 -33503990 - L1PA4 LINE L1 -119 6036 5032 435 175 5 30 chr3 194020713 194021389 -33503189 + (TA)n Simple_repeat Simple_repeat 1 658 0 382 179 29 0 chr3 194021409 194021582 -33502996 + (TA)n Simple_repeat Simple_repeat 2 179 0 671 14 0 0 chr3 194022257 194022331 -33502247 + tRNA-Val-GTT tRNA tRNA 1 74 -2 189 0 0 0 chr3 194022344 194022365 -33502213 + (T)n Simple_repeat Simple_repeat 1 21 0 204 81 0 54 chr3 194022394 194022431 -33502147 + (TTTTG)n Simple_repeat Simple_repeat 2 36 0 1468 113 19 5 chr3 194024869 194025082 -33499496 - AluSg/x SINE Alu -11 299 84 343 188 75 12 chr3 194025523 194025603 -33498975 + MIR SINE MIR 80 164 -98 227 268 39 31 chr3 194025711 194025838 -33498740 - L1ME4a LINE L1 -56 6065 5938 531 230 144 32 chr3 194026377 194026564 -33498014 + MIR SINE MIR 29 236 -26 2182 89 62 0 chr3 194026722 194027013 -33497565 - AluSx SINE Alu -3 309 1 198 0 0 0 chr3 194027508 194027530 -33497048 + (TG)n Simple_repeat Simple_repeat 2 23 0 264 293 30 30 chr3 194027575 194027674 -33496904 - MIR SINE MIR -55 153 55 474 235 167 37 chr3 194027911 194027975 -33496603 + MER5A DNA MER1_type 4 58 -131 1590 173 68 0 chr3 194027975 194028253 -33496325 + AluJo SINE Alu 1 297 -15 474 235 167 37 chr3 194028253 194028350 -33496228 + MER5A DNA MER1_type 58 186 -3 2398 73 0 3 chr3 194030084 194030385 -33494193 - AluY SINE Alu -11 300 1 279 306 0 24 chr3 194030897 194030982 -33493596 - L2 LINE L2 -400 2914 2832 3102 226 218 34 chr3 194031021 194032257 -33492321 - L2 LINE L2 -611 2703 1240 276 220 77 88 chr3 194034272 194034363 -33490215 + L2 LINE L2 3168 3257 -15 186 43 0 0 chr3 194034750 194034773 -33489805 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chr3 194034934 194034958 -33489620 + AT_rich Low_complexity Low_complexity 1 24 0 197 32 0 32 chr3 194035486 194035517 -33489061 + (TAAA)n Simple_repeat Simple_repeat 1 30 0 254 250 186 29 chr3 194039391 194039531 -33485047 + MER5B DNA MER1_type 2 163 -15 1985 116 30 0 chr3 194039538 194039806 -33484772 - AluSx SINE Alu -36 276 1 1142 75 0 12 chr3 194039924 194040084 -33484494 - L1PA5 LINE L1 0 6154 5997 2225 103 0 3 chr3 194040587 194040879 -33483699 + AluSx SINE Alu 5 295 -17 282 322 149 46 chr3 194041224 194041485 -33483093 - L3 LINE CR1 -1 1576 1289 2689 33 0 0 chr3 194041486 194041790 -33482788 - AluY SINE Alu -6 305 2 2254 125 0 0 chr3 194042694 194043007 -33481571 - AluSq SINE Alu 0 313 1 2338 94 0 0 chr3 194043811 194044108 -33480470 + AluSg SINE Alu 1 297 -13 28 56 0 28 chr3 194044274 194044304 -33480274 + AT_rich Low_complexity Low_complexity 1 30 -39 2178 108 0 14 chr3 194044304 194044615 -33479963 + AluSx SINE Alu 1 307 0 28 56 0 28 chr3 194044615 194044654 -33479924 + AT_rich Low_complexity Low_complexity 30 69 0 588 212 25 0 chr3 194044763 194044881 -33479697 - FLAM_C SINE Alu -11 122 2 26 30 0 0 chr3 194044956 194044989 -33479589 + AT_rich Low_complexity Low_complexity 1 33 0 194 222 19 0 chr3 194044996 194045050 -33479528 + (TATATG)n Simple_repeat Simple_repeat 5 59 0 274 311 53 34 chr3 194045050 194045314 -33479264 - L1ME3 LINE L1 -212 5950 5682 2298 104 0 0 chr3 194045471 194045779 -33478799 + AluSg SINE Alu 1 308 -2 663 243 119 5 chr3 194045783 194045993 -33478585 + MIR SINE MIR 29 262 0 2158 83 10 28 chr3 194047451 194047764 -33476814 - AluSq SINE Alu 0 308 1 244 271 0 78 chr3 194047806 194047935 -33476643 + L1MCc LINE L1 32 150 -6273 237 33 0 0 chr3 194047938 194047968 -33476610 + (CAAAAA)n Simple_repeat Simple_repeat 3 32 0 242 208 0 0 chr3 194048421 194048474 -33476104 + L1M4 LINE L1 4499 4551 -1595 931 28 0 0 chr3 194048474 194048581 -33475997 + AluY SINE Alu 194 300 -11 530 180 62 73 chr3 194048581 194048759 -33475819 + L1M4 LINE L1 4551 4726 -1420 387 0 0 0 chr3 194048824 194048867 -33475711 + (CA)n Simple_repeat Simple_repeat 2 44 0 346 287 0 0 chr3 194049360 194049447 -33475131 - MIR SINE MIR -54 208 122 1004 213 55 8 chr3 194050412 194050647 -33473931 + MER34 LTR ERV1 3 248 -294 3203 162 9 2 chr3 194050659 194051226 -33473352 + L1 LINE L1 16 586 -6979 * 13112 173 20 15 chr3 194051224 194052146 -33472432 + L1 LINE L1 3610 4525 -3040 2249 136 7 0 chr3 194052146 194052456 -33472122 + AluSx SINE Alu 1 312 0 13112 173 20 15 chr3 194052456 194054332 -33470246 + L1 LINE L1 4525 6424 -1141 2048 120 3 0 chr3 194054332 194054637 -33469941 + AluSx SINE Alu 1 306 0 416 130 39 0 chr3 194054638 194054715 -33469863 + LTR1 LTR ERV1 183 262 -523 * 2983 138 5 60 chr3 194054704 194055272 -33469306 + LTR1 LTR ERV1 205 738 -47 2502 88 71 0 chr3 194055272 194055624 -33468954 - MER51B LTR ERV1 0 377 1 2983 138 5 60 chr3 194055624 194055670 -33468908 + LTR1 LTR ERV1 738 785 0 2072 139 21 0 chr3 194055670 194056008 -33468570 + LOR1a LTR ERV1 153 497 0 2188 91 7 26 chr3 194058024 194058333 -33466245 - AluSx SINE Alu -9 303 1 423 254 95 24 chr3 194058609 194058861 -33465717 + L1ME4a LINE L1 5781 6050 -71 2035 106 63 0 chr3 194058877 194059161 -33465417 + AluSx SINE Alu 1 302 -10 23 0 0 0 chr3 194059183 194059206 -33465372 + AT_rich Low_complexity Low_complexity 1 23 0 195 42 0 0 chr3 194059897 194059921 -33464657 + (A)n Simple_repeat Simple_repeat 1 24 0 263 336 147 0 chr3 194059939 194060055 -33464523 + MIR SINE MIR 2 134 -128 2390 85 0 3 chr3 194060781 194061086 -33463492 - AluSx SINE Alu -8 304 1 186 271 186 0 chr3 194061088 194061147 -33463431 + MIR SINE MIR 79 148 -114 198 0 0 0 chr3 194061373 194061395 -33463183 + (T)n Simple_repeat Simple_repeat 1 22 0 1593 138 60 60 chr3 194062433 194062767 -33461811 - L1MB7 LINE L1 -1 6183 5850 4345 167 77 22 chr3 194062772 194063213 -33461365 - L1MB7 LINE L1 -1068 5078 4663 2319 102 3 3 chr3 194063213 194063516 -33461062 - AluSp SINE Alu -10 303 1 4345 167 77 22 chr3 194063516 194064037 -33460541 - L1MB7 LINE L1 -1483 4663 4063 1163 151 6 0 chr3 194064156 194064335 -33460243 + L1MB5 LINE L1 5995 6174 0 2249 83 10 10 chr3 194064524 194064813 -33459765 + AluY SINE Alu 1 289 -22 1791 141 40 0 chr3 194065395 194065672 -33458906 + AluJb SINE Alu 9 296 -16 635 317 63 10 chr3 194065685 194065988 -33458590 - MER20B DNA MER1_type -418 365 47 1916 128 0 0 chr3 194065994 194066267 -33458311 - AluY SINE Alu 0 311 39 238 224 104 0 chr3 194066483 194066550 -33458028 + L2 LINE L2 3240 3313 0 214 297 103 36 chr3 194066751 194066916 -33457662 - L2 LINE L2 -211 3061 2886 537 286 127 5 chr3 194067123 194067312 -33457266 + MIR SINE MIR 3 214 -48 279 365 10 10 chr3 194067775 194067879 -33456699 - MER5A DNA MER1_type 0 189 86 813 281 82 0 chr3 194067910 194068141 -33456437 - MIR SINE MIR -1 261 12 1398 269 34 55 chr3 194068277 194068315 -33456263 + L1MEc LINE L1 1140 1177 -5219 2246 118 3 0 chr3 194068315 194068621 -33455957 - AluSp SINE Alu -6 307 1 1398 269 34 55 chr3 194068621 194069005 -33455573 + L1MEc LINE L1 1177 1545 -4851 1563 202 0 36 chr3 194069005 194069312 -33455266 - AluJb SINE Alu -3 309 14 1398 269 34 55 chr3 194069312 194069557 -33455021 + L1MEc LINE L1 1545 1794 -4602 1039 188 53 0 chr3 194069850 194070058 -33454520 - AluJb SINE Alu -7 305 87 601 175 0 26 chr3 194070067 194070181 -33454397 + L1MB2 LINE L1 5206 5316 -830 4791 156 10 44 chr3 194071586 194072479 -33452099 + L1MB2 LINE L1 5308 6170 -1 2321 109 0 0 chr3 194072482 194072794 -33451784 + AluSx SINE Alu 1 312 0 21 36 0 0 chr3 194073979 194074007 -33450571 + AT_rich Low_complexity Low_complexity 1 28 0 2424 71 0 34 chr3 194076944 194077266 -33447312 + AluY SINE Alu 1 311 0 1743 163 3 23 chr3 194077435 194077742 -33446836 + AluJb SINE Alu 1 301 -11 245 29 29 0 chr3 194077855 194077889 -33446689 + (CAA)n Simple_repeat Simple_repeat 2 36 0 468 269 25 0 chr3 194078050 194078169 -33446409 - MIR SINE MIR -128 134 13 21 36 0 0 chr3 194079469 194079497 -33445081 + AT_rich Low_complexity Low_complexity 1 28 0 1699 155 30 7 chr3 194081265 194081562 -33443016 + L1MC1 LINE L1 6029 6332 -1 1120 251 90 39 chr3 194082287 194082674 -33441904 + LTR16C LTR ERVL 85 491 0 2469 76 23 0 chr3 194082851 194083155 -33441423 - AluSx SINE Alu -1 311 1 1202 143 13 46 chr3 194083166 194083403 -33441175 - L1MA10 LINE L1 -2 6332 6104 1439 151 13 0 chr3 194083403 194083641 -33440937 + L1MB1 LINE L1 5849 6089 -100 2070 134 0 7 chr3 194083641 194083946 -33440632 + AluSx SINE Alu 1 303 -9 1123 96 19 6 chr3 194084717 194084873 -33439705 - L1MA3 LINE L1 0 6305 6148 354 115 0 0 chr3 194084873 194084934 -33439644 + (TTTA)n Simple_repeat Simple_repeat 2 62 0 2314 84 0 0 chr3 194084934 194085218 -33439360 - AluY SINE Alu -27 284 1 2148 125 0 0 chr3 194085220 194085515 -33439063 - AluSx SINE Alu -17 295 1 204 326 47 47 chr3 194085867 194085996 -33438582 - L2 LINE L2 0 3313 3185 361 287 20 0 chr3 194086492 194086593 -33437985 + MER5B DNA MER1_type 9 111 -67 200 299 71 87 chr3 194086498 194086625 -33437953 - MER5A DNA MER1_type -14 175 51 * 376 303 183 19 chr3 194086938 194087146 -33437432 - MIR SINE MIR -15 247 6 2375 75 0 10 chr3 194090184 194090479 -33434099 + AluSc SINE Alu 12 303 -6 1151 151 2 12 chr3 194091750 194091988 -33432590 - L1ME3A LINE L1 -142 6032 5796 311 180 16 33 chr3 194094544 194094605 -33429973 + Tigger5 DNA MER2_type 20 79 -2244 229 258 0 41 chr3 194094867 194094964 -33429614 + (CCCCG)n Simple_repeat Simple_repeat 2 94 0 216 0 0 0 chr3 194095110 194095134 -33429444 + (A)n Simple_repeat Simple_repeat 1 24 0 439 222 0 28 chr3 194095726 194095834 -33428744 + MLT1C LTR MaLR 1 105 -362 701 187 65 0 chr3 194095854 194095993 -33428585 + MLT1C LTR MaLR 320 467 0 2154 110 0 3 chr3 194096105 194096430 -33428148 + AluSc SINE Alu 1 324 0 2384 92 0 13 chr3 194096585 194096902 -33427676 + AluSq SINE Alu 1 313 0 2354 89 0 3 chr3 194096935 194097238 -33427340 + AluSx SINE Alu 1 302 -10 237 33 0 0 chr3 194097246 194097276 -33427302 + (CAA)n Simple_repeat Simple_repeat 2 31 0 2158 223 67 95 chr3 194097755 194098057 -33426521 - L1MC5 LINE L1 -44 7917 7608 1972 91 4 8 chr3 194098057 194098321 -33426257 + AluSx SINE Alu 23 285 -27 2158 223 67 95 chr3 194098321 194099107 -33425471 - L1MC5 LINE L1 -353 7608 6859 499 212 98 27 chr3 194099179 194099363 -33425215 - Charlie7 DNA MER1_type 0 2612 2416 583 211 18 0 chr3 194100753 194100867 -33423711 + FLAM_A SINE Alu 1 116 -17 210 37 0 0 chr3 194100897 194100924 -33423654 + (TAA)n Simple_repeat Simple_repeat 1 27 0 217 250 0 71 chr3 194101545 194101601 -33422977 - L2 LINE L2 -7 3265 3214 1195 82 0 0 chr3 194102200 194102347 -33422231 + AluSc SINE Alu 1 147 -162 411 202 75 0 chr3 194102349 194102443 -33422135 + MLT1B LTR MaLR 190 290 -100 454 179 36 0 chr3 194102608 194102692 -33421886 + MLT1B LTR MaLR 304 390 0 411 291 109 0 chr3 194103221 194103386 -33421192 + MIR SINE MIR 72 254 -8 2117 114 0 20 chr3 194103479 194103777 -33420801 - AluSx SINE Alu -16 296 5 2167 98 0 22 chr3 194104212 194104528 -33420050 + AluSc SINE Alu 1 309 0 235 198 6 42 chr3 194105282 194105365 -33419213 + MLT1J LTR MaLR 42 135 -332 * 243 303 16 101 chr3 194105318 194105506 -33419072 + LTR67 LTR ERVL 114 285 -272 5218 136 178 10 chr3 194105704 194106711 -33417867 - MER52C LTR ERV1 0 1278 7 347 334 135 53 chr3 194106913 194107375 -33417203 + L2 LINE L2 2767 3261 -11 469 265 26 33 chr3 194107478 194107629 -33416949 - MLT1I LTR MaLR -188 221 72 2223 88 57 0 chr3 194107868 194108164 -33416414 - AluSp SINE Alu 0 313 1 320 26 0 0 chr3 194108959 194108998 -33415580 + LTR38B LTR ERV1 1 39 -571 2233 92 6 48 chr3 194108998 194109314 -33415264 - AluSx SINE Alu -7 305 3 262 290 26 98 chr3 194109361 194109554 -33415024 + LTR67 LTR ERVL 184 362 -195 21 36 0 0 chr3 194110003 194110031 -33414547 + AT_rich Low_complexity Low_complexity 1 28 0 631 269 145 0 chr3 194110090 194110339 -33414239 - HAL1 LINE L1 -130 2377 2093 1083 179 105 49 chr3 194110348 194110672 -33413906 - L1MB7 LINE L1 -44 6140 5799 2001 114 11 78 chr3 194110672 194111079 -33413499 - MER52C LTR ERV1 0 1278 860 2284 97 0 0 chr3 194111119 194111407 -33413171 + AluSx SINE Alu 1 288 -24 315 0 0 0 chr3 194111414 194111449 -33413129 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 1427 290 119 41 chr3 194111499 194112477 -33412101 - HAL1 LINE L1 -1442 1065 12 234 182 0 0 chr3 194112498 194112542 -33412036 + LTR67 LTR ERVL 478 521 -36 604 168 87 29 chr3 194112693 194112866 -33411712 - HsTC2 DNA Tc2 -102 1796 1614 2020 134 3 7 chr3 194112866 194113164 -33411414 - AluSx SINE Alu -15 297 1 2139 138 19 41 chr3 194113196 194113559 -33411019 - L1MB2 LINE L1 -3 6168 5814 2253 119 10 0 chr3 194113662 194113972 -33410606 + AluSq SINE Alu 1 313 0 22 0 0 0 chr3 194113996 194114018 -33410560 + AT_rich Low_complexity Low_complexity 1 22 0 26 0 0 0 chr3 194114506 194114532 -33410046 + AT_rich Low_complexity Low_complexity 1 26 0 841 161 15 8 chr3 194115458 194115588 -33408990 + AluSq/x SINE Alu 2 132 -181 485 319 98 60 chr3 194115684 194116114 -33408464 + L2 LINE L2 2827 3272 0 341 130 29 0 chr3 194116916 194116927 -33407651 + L1MA2 LINE L1 6113 6122 -182 1456 60 5 45 chr3 194116927 194117090 -33407488 - L1MA2 LINE L1 0 6304 6136 207 0 0 0 chr3 194117090 194117113 -33407465 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2087 130 0 0 chr3 194117113 194117397 -33407181 - AluSq SINE Alu -29 284 1 1456 60 5 45 chr3 194117397 194117432 -33407146 - L1MA2 LINE L1 -166 6138 6113 341 130 29 0 chr3 194117432 194117489 -33407089 + L1MA2 LINE L1 6122 6183 -121 * 631 112 47 16 chr3 194117484 194117617 -33406961 - L1MA1 LINE L1 -197 6106 5966 833 252 174 67 chr3 194117901 194118349 -33406229 - L2 LINE L2 -7 3306 2811 257 158 139 99 chr3 194118742 194118817 -33405761 - L1MC5 LINE L1 -45 7916 7845 1554 182 0 45 chr3 194118817 194118929 -33405649 + AluJo SINE Alu 5 121 -191 2298 97 0 26 chr3 194118929 194119239 -33405339 + AluY SINE Alu 1 302 -9 1554 182 0 45 chr3 194119239 194119412 -33405166 + AluJo SINE Alu 121 277 -35 180 97 0 0 chr3 194119415 194119446 -33405132 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 257 158 139 99 chr3 194119446 194119467 -33405111 - L1MC5 LINE L1 -117 7844 7812 228 252 126 44 chr3 194119486 194119502 -33405076 - L1MC5 LINE L1 -125 7836 7823 2000 141 0 26 chr3 194119502 194119814 -33404764 - AluSx SINE Alu -8 304 1 228 252 126 44 chr3 194119814 194119932 -33404646 - L1MC5 LINE L1 -138 7823 7691 620 314 90 41 chr3 194120116 194120607 -33403971 + L2 LINE L2 2463 2977 -337 1119 129 12 0 chr3 194121217 194121387 -33403191 - AluSg/x SINE Alu -10 302 131 2176 119 3 0 chr3 194121398 194121692 -33402886 - AluSx SINE Alu -17 295 1 331 218 227 0 chr3 194121978 194122088 -33402490 - MIR3 SINE MIR -65 143 9 231 309 51 55 chr3 194122096 194122332 -33402246 - L2 LINE L2 -1353 1961 1727 252 0 0 0 chr3 194122457 194122485 -33402093 + (CA)n Simple_repeat Simple_repeat 2 29 0 224 259 19 19 chr3 194122487 194122541 -33402037 + MIR SINE MIR 29 82 -180 418 220 60 0 chr3 194122696 194122796 -33401782 - MER53 DNA DNA -83 106 1 2253 105 3 16 chr3 194123304 194123619 -33400959 + AluSx SINE Alu 1 311 -1 1818 167 10 3 chr3 194123919 194124213 -33400365 + AluJb SINE Alu 1 296 -16 216 0 0 0 chr3 194124215 194124239 -33400339 + (TA)n Simple_repeat Simple_repeat 2 25 0 205 178 19 65 chr3 194124248 194124355 -33400223 + (TATAA)n Simple_repeat Simple_repeat 4 105 0 713 225 32 88 chr3 194124357 194124505 -33400073 + MER20B DNA MER1_type 516 671 -112 1937 123 0 0 chr3 194124505 194124774 -33399804 - AluSx SINE Alu -43 269 1 1634 172 12 49 chr3 194124784 194125110 -33399468 - L1MC1 LINE L1 -2 6331 6018 713 225 32 88 chr3 194125110 194125234 -33399344 + MER20B DNA MER1_type 680 783 0 204 40 0 0 chr3 194125307 194125332 -33399246 + (T)n Simple_repeat Simple_repeat 1 25 0 2387 90 0 0 chr3 194125386 194125686 -33398892 - AluSg SINE Alu -10 300 1 2291 99 3 0 chr3 194126595 194126898 -33397680 + AluSx SINE Alu 1 304 -8 2081 112 0 17 chr3 194127201 194127512 -33397066 - AluSx SINE Alu 0 306 1 2706 108 57 42 chr3 194127907 194128143 -33396435 + Tigger2a DNA MER2_type 5 251 -2457 2193 96 0 10 chr3 194128143 194128445 -33396133 + AluSx SINE Alu 1 299 -13 2706 108 57 42 chr3 194128445 194128632 -33395946 + Tigger2a DNA MER2_type 251 434 0 651 272 89 25 chr3 194128813 194129048 -33395530 - MIR SINE MIR 0 262 13 2205 82 0 7 chr3 194129321 194129613 -33394965 - AluY SINE Alu -21 290 1 1923 94 54 11 chr3 194129919 194130196 -33394382 + AluSx SINE Alu 9 297 -15 1039 194 0 28 chr3 194130264 194130444 -33394134 + FAM SINE Alu 1 175 0 2373 83 0 13 chr3 194130651 194130952 -33393626 - AluSq SINE Alu -16 297 1 401 320 0 48 chr3 194130999 194131124 -33393454 - L2 LINE L2 -15 3298 3180 630 167 22 127 chr3 194131378 194131544 -33393034 - MER113 DNA MER1_type? -297 224 87 1884 140 38 0 chr3 194131544 194131837 -33392741 + AluJb SINE Alu 5 308 -4 630 167 22 127 chr3 194131837 194131898 -33392680 - MER113 DNA MER1_type? -434 87 21 239 266 0 0 chr3 194132152 194132216 -33392362 + G-rich Low_complexity Low_complexity 1 64 0 21 0 0 0 chr3 194132417 194132438 -33392140 + GC_rich Low_complexity Low_complexity 1 21 0 2035 138 3 3 chr3 194132603 194132908 -33391670 - AluSc SINE Alu -4 305 1 2227 129 0 3 chr3 194134108 194134418 -33390160 - AluSx SINE Alu -3 309 1 220 319 29 0 chr3 194134459 194134528 -33390050 + MIR3 SINE MIR 114 184 -24 1305 103 0 6 chr3 194134972 194135147 -33389431 - AluSq SINE Alu -19 294 121 280 97 0 40 chr3 194135151 194135201 -33389377 - AluJb SINE Alu -143 159 117 2234 115 0 7 chr3 194135261 194135557 -33389021 - AluSq SINE Alu -19 294 1 575 236 84 28 chr3 194135562 194135740 -33388838 + MIR SINE MIR 68 255 -7 245 246 15 0 chr3 194136269 194136334 -33388244 - MER117 DNA MER1_type -47 150 85 314 266 0 43 chr3 194136863 194136957 -33387621 + L1MC4 LINE L1 6614 6703 -1339 225 202 11 21 chr3 194137775 194137869 -33386709 + C-rich Low_complexity Low_complexity 3 95 0 378 248 35 50 chr3 194138213 194138334 -33386244 + L1ME4a LINE L1 5927 6045 -76 1847 94 86 11 chr3 194138334 194138601 -33385977 + AluSx SINE Alu 1 287 -25 378 248 35 50 chr3 194138601 194138677 -33385901 + L1ME4a LINE L1 6045 6121 0 802 144 8 0 chr3 194139257 194139375 -33385203 - AluSg1 SINE Alu -190 119 1 762 189 24 0 chr3 194139378 194139505 -33385073 - FLAM_A SINE Alu -12 130 1 212 300 20 0 chr3 194139845 194139895 -33384683 + L2 LINE L2 3214 3264 -8 505 232 52 32 chr3 194140288 194140537 -33384041 + L2 LINE L2 2525 2962 -351 268 202 45 67 chr3 194140562 194140651 -33383927 + L2 LINE L2 3186 3272 0 238 301 170 7 chr3 194141615 194141768 -33382810 - L2 LINE L2 -108 3205 3028 656 278 29 41 chr3 194141969 194142085 -33382493 - MIR SINE MIR -1 261 145 2570 48 0 19 chr3 194142085 194142401 -33382177 - AluY SINE Alu -1 310 1 656 278 29 41 chr3 194142401 194142529 -33382049 - MIR SINE MIR -117 145 20 1663 142 32 0 chr3 194143084 194143337 -33381241 - AluSx SINE Alu -2 310 50 859 227 58 40 chr3 194143723 194143948 -33380630 - MIR SINE MIR -2 260 32 24 32 0 0 chr3 194144310 194144341 -33380237 + AT_rich Low_complexity Low_complexity 1 31 0 1379 211 3 28 chr3 194144528 194144808 -33379770 + MER68 LTR ERV1 4 276 -286 318 139 0 0 chr3 194144808 194144851 -33379727 + Alu SINE Alu 1 43 -259 1122 184 0 15 chr3 194144851 194145047 -33379531 - AluJb SINE Alu -35 277 85 2119 101 7 10 chr3 194145761 194146059 -33378519 + AluSc SINE Alu 1 297 -12 496 221 196 13 chr3 194146680 194147032 -33377546 + MER113 DNA MER1_type? 2 482 -39 2150 103 3 0 chr3 194147034 194147340 -33377238 + AluSp SINE Alu 3 309 0 709 168 0 0 chr3 194147850 194147957 -33376621 - AluSg/x SINE Alu -11 298 192 563 160 11 0 chr3 194147949 194148043 -33376535 + AluSg/x SINE Alu 207 301 -11 * 6495 213 66 38 chr3 194148506 194149704 -33374874 - L1MC/D LINE L1 -743 5403 4149 2355 104 0 0 chr3 194149704 194150011 -33374567 - AluSc SINE Alu -2 307 1 6495 213 66 38 chr3 194150011 194150943 -33373635 - L1MC/D LINE L1 -1997 4149 3244 1893 218 53 49 chr3 194150951 194151039 -33373539 - MLT1E2 LTR MaLR -1 625 539 693 193 44 0 chr3 194151039 194151174 -33373404 - L1PB4 LINE L1 -12 6144 6004 1893 218 53 49 chr3 194151174 194151598 -33372980 - MLT1E2 LTR MaLR -87 539 111 33 43 0 0 chr3 194151782 194151829 -33372749 + AT_rich Low_complexity Low_complexity 1 47 0 2281 105 3 6 chr3 194152011 194152324 -33372254 + AluSx SINE Alu 1 312 0 33 43 0 0 chr3 194152499 194152546 -33372032 + AT_rich Low_complexity Low_complexity 1 47 0 23 0 0 0 chr3 194152572 194152595 -33371983 + AT_rich Low_complexity Low_complexity 1 23 0 2279 107 0 0 chr3 194152598 194152897 -33371681 - AluSg SINE Alu -11 299 1 420 219 60 33 chr3 194152901 194153052 -33371526 + L1MC5 LINE L1 7763 7917 -44 560 296 135 27 chr3 194153271 194153642 -33370936 + L3 LINE CR1 1158 1568 -9 491 103 41 0 chr3 194154812 194154909 -33369669 + (TA)n Simple_repeat Simple_repeat 2 102 0 2389 214 145 7 chr3 194155806 194156413 -33368165 + L1MD2 LINE L1 5659 6349 -10 2075 141 0 7 chr3 194156422 194156727 -33367851 + AluSx SINE Alu 1 303 -9 630 222 19 31 chr3 194156734 194156896 -33367682 - L1MC5 LINE L1 -78 7883 7724 542 208 92 29 chr3 194157357 194157530 -33367048 - L2 LINE L2 -9 3304 3121 338 248 83 16 chr3 194157551 194157672 -33366906 + L2 LINE L2 1472 1600 -1714 1362 245 45 46 chr3 194157688 194157967 -33366611 + L2 LINE L2 2743 3021 -292 1667 200 38 30 chr3 194157967 194158155 -33366423 + MLT1A2 LTR MaLR 1 186 -188 222 37 0 0 chr3 194158155 194158182 -33366396 + (TC)n Simple_repeat Simple_repeat 2 28 0 1667 200 38 30 chr3 194158182 194158363 -33366215 + MLT1A2 LTR MaLR 186 373 -1 1362 245 45 46 chr3 194158363 194158664 -33365914 + L2 LINE L2 3021 3312 -1 710 277 67 8 chr3 194158682 194158935 -33365643 - L2 LINE L2 -232 3081 2814 268 185 74 0 chr3 194158946 194159000 -33365578 + MER20B DNA MER1_type 15 72 -711 786 260 140 7 chr3 194159011 194159266 -33365312 + Charlie2 DNA MER1_type 2 300 -2482 279 0 0 0 chr3 194159266 194159297 -33365281 + (CA)n Simple_repeat Simple_repeat 2 32 0 786 260 140 7 chr3 194159297 194159326 -33365252 + Charlie2 DNA MER1_type 300 324 -2458 2798 212 123 32 chr3 194159327 194160234 -33364344 + Charlie2 DNA MER1_type 1857 2846 -16 801 171 60 72 chr3 194160242 194160299 -33364279 + MER20B DNA MER1_type 536 592 -191 2236 81 32 0 chr3 194160299 194160582 -33363996 - AluSx SINE Alu -20 292 1 801 171 60 72 chr3 194160582 194160775 -33363803 + MER20B DNA MER1_type 592 783 0 302 319 31 25 chr3 194160845 194161005 -33363573 - L2 LINE L2 -616 2698 2538 1219 134 0 0 chr3 194162007 194162178 -33362400 - AluSg/x SINE Alu -7 303 133 2311 98 0 0 chr3 194162178 194162474 -33362104 - AluSg SINE Alu -14 296 1 1063 377 9 69 chr3 194162670 194162988 -33361590 - AluSc SINE Alu 0 299 1 2153 88 0 85 chr3 194163074 194163414 -33361164 + AluY SINE Alu 1 311 0 279 0 0 0 chr3 194164266 194164297 -33360281 + (T)n Simple_repeat Simple_repeat 1 31 0 2172 82 50 0 chr3 194164874 194165153 -33359425 + AluSq SINE Alu 1 293 -20 2234 113 0 3 chr3 194166141 194166441 -33358137 + AluSx SINE Alu 1 299 -13 408 88 0 0 chr3 194167100 194167157 -33357421 - Alu SINE Alu -256 57 1 446 306 50 31 chr3 194168357 194168618 -33355960 + L2 LINE L2 2393 2658 -656 2212 126 0 0 chr3 194170168 194170478 -33354100 - AluSg SINE Alu 0 310 1 1666 146 33 7 chr3 194170667 194170968 -33353610 - AluSx SINE Alu 0 308 1 1933 108 4 0 chr3 194170985 194171243 -33353335 - AluSx SINE Alu -25 287 29 194 171 49 85 chr3 194171375 194171457 -33353121 + MER5C DNA MER1_type 22 100 -224 187 151 0 57 chr3 194171916 194171969 -33352609 + CT-rich Low_complexity Low_complexity 3 52 0 201 129 0 0 chr3 194173358 194173389 -33351189 + (TG)n Simple_repeat Simple_repeat 2 32 0 2244 102 0 0 chr3 194173437 194173748 -33350830 + AluSx SINE Alu 1 311 0 247 164 98 16 chr3 194174086 194174147 -33350431 - MIR SINE MIR -16 246 181 22 43 0 21 chr3 194174368 194174398 -33350180 + AT_rich Low_complexity Low_complexity 1 31 -15 2156 108 0 0 chr3 194174398 194174685 -33349893 + AluSx SINE Alu 1 287 -25 22 43 0 21 chr3 194174685 194174701 -33349877 + AT_rich Low_complexity Low_complexity 31 46 0 2445 71 0 0 chr3 194175411 194175705 -33348873 + AluSc SINE Alu 1 294 -15 916 170 48 48 chr3 194176131 194176360 -33348218 - MLT1A2 LTR MaLR -6 368 140 1304 128 25 0 chr3 194176463 194176666 -33347912 + AluSp SINE Alu 101 308 -5 1640 121 52 26 chr3 194176674 194176979 -33347599 + AluSq SINE Alu 1 313 0 2409 81 13 0 chr3 194177017 194177325 -33347253 + AluSx SINE Alu 1 312 0 2365 110 0 0 chr3 194177449 194177757 -33346821 - AluSx SINE Alu -4 308 1 1446 211 0 7 chr3 194178842 194179117 -33345461 + AluJo SINE Alu 1 273 -39 2338 174 109 60 chr3 194179117 194179493 -33345085 + L1ME2 LINE L1 5404 5760 -404 1986 106 22 67 chr3 194179493 194179805 -33344773 - AluSq SINE Alu -15 298 1 2338 174 109 60 chr3 194179805 194180145 -33344433 + L1ME2 LINE L1 5760 6155 -9 1746 161 0 14 chr3 194180667 194180953 -33343625 - AluJb SINE Alu -25 287 6 23 33 0 0 chr3 194181034 194181064 -33343514 + AT_rich Low_complexity Low_complexity 1 30 0 192 307 70 44 chr3 194181223 194181337 -33343241 + MIR SINE MIR 44 160 -102 611 215 174 23 chr3 194181473 194181692 -33342886 + MIR SINE MIR 1 252 -10 1918 143 27 0 chr3 194181946 194182246 -33342332 + AluJb SINE Alu 1 308 -4 2063 139 0 16 chr3 194182952 194183269 -33341309 + AluSx SINE Alu 1 312 0 1519 139 8 16 chr3 194183391 194183635 -33340943 - AluSq SINE Alu -71 242 1 22 56 0 0 chr3 194183910 194183946 -33340632 + AT_rich Low_complexity Low_complexity 1 36 0 23 68 0 0 chr3 194184090 194184134 -33340444 + AT_rich Low_complexity Low_complexity 1 44 0 950 221 6 0 chr3 194184649 194184821 -33339757 - AluJb SINE Alu -139 173 1 1404 193 67 0 chr3 194184902 194185172 -33339406 - AluJo SINE Alu -24 288 1 570 193 18 18 chr3 194185491 194185605 -33338973 + FLAM_A SINE Alu 12 125 -17 764 168 23 0 chr3 194185816 194185947 -33338631 - FLAM_A SINE Alu -8 134 1 865 179 98 18 chr3 194185949 194186173 -33338405 + MER58 DNA MER1_type 42 283 -58 2085 100 46 0 chr3 194186559 194186839 -33337739 - AluSx SINE Alu -19 293 1 222 150 0 0 chr3 194188066 194188106 -33336472 + (T)n Simple_repeat Simple_repeat 1 40 0 428 157 133 0 chr3 194188220 194188303 -33336275 + AluJ/FLAM SINE Alu 1 94 -218 1244 152 8 78 chr3 194188309 194188428 -33336150 + AluJb SINE Alu 28 121 -191 2341 74 0 13 chr3 194188428 194188726 -33335852 + AluY SINE Alu 1 294 -17 1244 152 8 78 chr3 194188726 194188862 -33335716 + AluJb SINE Alu 121 265 -47 1898 128 10 58 chr3 194189114 194189427 -33335151 - AluSq SINE Alu -15 298 1 340 274 97 0 chr3 194189465 194189589 -33334989 + MIR SINE MIR 127 262 0 510 176 105 85 chr3 194189978 194190131 -33334447 - MER2 DNA MER2_type -189 156 1 340 225 0 0 chr3 194190206 194190286 -33334292 - MER116 DNA Mariner 0 80 1 2129 113 3 0 chr3 194190353 194190672 -33333906 + AluSg SINE Alu 1 320 0 317 155 0 0 chr3 194191106 194191164 -33333414 - HsTC2 DNA Tc2 -1812 86 29 2182 110 0 17 chr3 194191821 194192121 -33332457 - AluSx SINE Alu -17 295 1 286 316 168 0 chr3 194192267 194192362 -33332216 - MIR SINE MIR -66 142 32 675 270 90 22 chr3 194192798 194193209 -33331369 + L1ME4a LINE L1 5526 5964 -157 222 179 30 15 chr3 194193229 194193296 -33331282 + (CATATA)n Simple_repeat Simple_repeat 3 70 0 384 320 96 0 chr3 194193477 194193633 -33330945 - MIR SINE MIR -33 229 59 243 0 0 0 chr3 194193689 194193716 -33330862 + (CA)n Simple_repeat Simple_repeat 1 27 0 360 305 148 25 chr3 194194157 194194393 -33330185 + L2 LINE L2 2598 2862 -452 251 302 114 89 chr3 194194463 194194778 -33329800 + L2 LINE L2 2941 3263 -9 2147 119 3 3 chr3 194195844 194196156 -33328422 + AluSx SINE Alu 1 312 0 1410 154 12 136 chr3 194196350 194196482 -33328096 + AluSq SINE Alu 2 70 -233 2338 60 3 0 chr3 194196482 194196767 -33327811 + AluY SINE Alu 1 286 -25 1410 154 12 136 chr3 194196767 194196965 -33327613 + AluSq SINE Alu 70 291 -12 2148 113 3 0 chr3 194198070 194198363 -33326215 - AluSq SINE Alu -19 294 1 267 187 77 55 chr3 194199711 194199802 -33324776 - MIR SINE MIR -50 212 120 2128 125 0 10 chr3 194199916 194200220 -33324358 + AluSx SINE Alu 1 301 -11 366 255 70 37 chr3 194200577 194200745 -33323833 - MIR SINE MIR -59 203 38 483 156 83 9 chr3 194200758 194200867 -33323711 + MLT1A2 LTR MaLR 1 117 -257 211 211 0 0 chr3 194201082 194201134 -33323444 + T-rich Low_complexity Low_complexity 1 52 0 22 0 0 0 chr3 194201205 194201227 -33323351 + AT_rich Low_complexity Low_complexity 1 22 0 1874 118 49 3 chr3 194201342 194201629 -33322949 - AluSx SINE Alu -12 300 1 360 169 0 0 chr3 194203175 194203234 -33321344 - MER3 DNA MER1_type -150 59 1 1480 181 39 42 chr3 194203249 194203551 -33321027 + MER58B DNA MER1_type 1 302 -2118 2338 77 0 7 chr3 194203551 194203851 -33320727 - AluY SINE Alu -13 298 1 2137 126 0 19 chr3 194203851 194204161 -33320417 - AluSx SINE Alu -8 304 1 1480 181 39 42 chr3 194204161 194204189 -33320389 + MER58B DNA MER1_type 300 331 -10 1517 171 82 20 chr3 194205159 194205451 -33319127 - AluJb SINE Alu -2 310 1 1961 149 3 19 chr3 194205500 194205815 -33318763 - AluSx SINE Alu -2 310 1 1762 128 0 4 chr3 194206151 194206393 -33318185 - AluSq SINE Alu -72 241 1 206 203 159 0 chr3 194206418 194206487 -33318091 + MIR SINE MIR 137 216 -46 881 190 11 38 chr3 194206494 194206678 -33317900 - FAM SINE Alu -1 48 1 1736 123 3 65 chr3 194206893 194207201 -33317377 - AluSx SINE Alu -23 289 1 1090 174 0 0 chr3 194207243 194207415 -33317163 - AluSg/x SINE Alu -12 300 129 188 313 0 0 chr3 194207508 194207540 -33317038 + C-rich Low_complexity Low_complexity 1 32 0 1993 98 13 36 chr3 194207674 194207979 -33316599 + AluSq SINE Alu 1 298 -15 283 281 37 12 chr3 194208311 194208393 -33316185 + MIR SINE MIR 8 91 -171 671 299 176 6 chr3 194208467 194208928 -33315650 + L2 LINE L2 2526 3133 -180 637 84 0 0 chr3 194209031 194209114 -33315464 + AluY SINE Alu 52 134 -177 1906 127 13 10 chr3 194209114 194209413 -33315165 + AluSq SINE Alu 1 300 -13 1550 116 23 148 chr3 194209976 194210124 -33314454 + AluJb SINE Alu 11 93 -219 1471 147 0 0 chr3 194210124 194210349 -33314229 + AluSc SINE Alu 82 306 -3 1550 116 23 148 chr3 194210349 194210545 -33314033 + AluJb SINE Alu 93 312 0 2210 125 0 6 chr3 194211488 194211800 -33312778 - AluSx SINE Alu -2 310 1 300 274 0 88 chr3 194211828 194211882 -33312696 - MER5A DNA MER1_type -83 106 66 2476 68 3 3 chr3 194211882 194212193 -33312385 - AluY SINE Alu 0 311 1 300 274 0 88 chr3 194212193 194212251 -33312327 - MER5A DNA MER1_type -123 66 4 270 192 173 0 chr3 194212256 194212308 -33312270 - MIR3 SINE MIR -49 159 99 22 35 0 0 chr3 194212637 194212666 -33311912 + AT_rich Low_complexity Low_complexity 1 29 0 2186 107 6 35 chr3 194212800 194213117 -33311461 + AluY SINE Alu 1 308 -3 860 200 0 6 chr3 194213120 194213290 -33311288 + AluJb SINE Alu 129 297 -15 2228 131 0 0 chr3 194213413 194213711 -33310867 - AluSx SINE Alu -12 300 3 31 68 0 0 chr3 194213722 194213781 -33310797 + AT_rich Low_complexity Low_complexity 1 59 0 268 265 96 0 chr3 194214498 194214581 -33309997 + MIR3 SINE MIR 100 190 -18 1366 191 54 125 chr3 194214892 194215802 -33308776 + L1MB7 LINE L1 4860 5691 -765 680 108 0 0 chr3 194215804 194215897 -33308681 - AluSp/q SINE Alu -10 303 211 2071 142 0 0 chr3 194215935 194216230 -33308348 + AluSx SINE Alu 1 295 -17 1982 187 16 20 chr3 194216231 194216670 -33307908 + L1MB7 LINE L1 5717 6153 -31 2435 60 10 0 chr3 194216670 194216971 -33307607 - AluY SINE Alu -7 304 1 2475 73 0 10 chr3 194216989 194217331 -33307247 - AluY SINE Alu 0 339 1 422 225 11 11 chr3 194217544 194217633 -33306945 + MIR SINE MIR 61 149 -113 2957 172 33 19 chr3 194217638 194218226 -33306352 - Tigger7 DNA MER2_type 0 2487 4 243 0 0 0 chr3 194218337 194218364 -33306214 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2078 104 0 7 chr3 194218366 194218653 -33305925 - AluSx SINE Alu -27 285 1 10649 190 18 49 chr3 194218813 194219836 -33304742 - L1 LINE L1 -1640 4506 3453 1673 167 7 4 chr3 194219836 194220111 -33304467 - AluJb SINE Alu -36 276 1 10649 190 18 49 chr3 194220111 194221289 -33303289 - L1 LINE L1 -2693 3453 2240 1550 208 0 7 chr3 194221289 194221583 -33302995 - AluJo SINE Alu -20 292 1 10649 190 18 49 chr3 194221583 194221830 -33302748 - L1 LINE L1 -3906 2240 1987 1729 164 10 36 chr3 194221830 194221959 -33302619 + AluJb SINE Alu 1 132 -180 333 0 0 0 chr3 194221959 194221996 -33302582 + (CA)n Simple_repeat Simple_repeat 2 38 0 1729 164 10 36 chr3 194221996 194222170 -33302408 + AluJb SINE Alu 132 296 -16 10649 190 18 49 chr3 194222170 194222181 -33302397 - L1 LINE L1 -4159 1987 1977 2011 110 4 0 chr3 194222181 194222453 -33302125 + AluSc SINE Alu 18 290 -19 10649 190 18 49 chr3 194222453 194222737 -33301841 - L1 LINE L1 -4169 1977 1686 1587 150 98 4 chr3 194222737 194223003 -33301575 + AluJb SINE Alu 1 291 -21 2313 80 3 0 chr3 194223012 194223301 -33301277 + AluY SINE Alu 1 290 -21 2143 105 4 0 chr3 194223306 194223609 -33300969 + AluSg SINE Alu 2 305 0 10649 190 18 49 chr3 194223609 194223688 -33300890 - L1 LINE L1 -4278 1868 1788 269 220 0 0 chr3 194223744 194223794 -33300784 + AluJ/monomer SINE Alu 1 50 -258 844 207 18 24 chr3 194223858 194224022 -33300556 - FRAM SINE Alu -3 163 1 2223 112 3 3 chr3 194224028 194224332 -33300246 - AluSg SINE Alu -6 304 1 1959 138 17 0 chr3 194224342 194224631 -33299947 - AluSx SINE Alu -16 296 3 2238 97 3 0 chr3 194224687 194224976 -33299602 - AluSg SINE Alu -20 290 1 386 267 115 37 chr3 194225167 194225358 -33299220 + L1MC4a LINE L1 5727 5932 -1876 374 322 88 19 chr3 194225894 194226099 -33298479 + L1ME4a LINE L1 5619 5837 -284 292 286 130 13 chr3 194226187 194226341 -33298237 + L1MC4 LINE L1 7496 7667 -375 466 95 63 0 chr3 194226386 194226449 -33298129 + Alu SINE Alu 222 288 -21 1773 108 4 22 chr3 194226450 194226718 -33297860 + AluSg SINE Alu 48 310 0 1783 197 0 0 chr3 194226726 194227036 -33297542 + AluJb SINE Alu 1 310 -2 2460 66 0 3 chr3 194227051 194227356 -33297222 + AluY SINE Alu 1 304 -7 424 264 115 95 chr3 194227358 194228098 -33296480 + HAL1 LINE L1 968 1722 -785 2000 132 0 20 chr3 194228700 194229003 -33295575 + AluSx SINE Alu 1 297 -15 389 153 17 0 chr3 194229017 194229076 -33295502 + U7 snRNA snRNA 2 61 -2 236 204 0 0 chr3 194229149 194229193 -33295385 - L2 LINE L2 -6 3307 3264 283 185 37 0 chr3 194229384 194229438 -33295140 - MLT1A2 LTR MaLR 0 374 319 2168 120 45 3 chr3 194229438 194229747 -33294831 - MER1B DNA MER1_type 0 339 18 1323 197 82 16 chr3 194229755 194230060 -33294518 - MLT1A2 LTR MaLR -49 325 1 325 298 133 26 chr3 194230107 194230258 -33294320 - MIR3 SINE MIR -30 178 12 1352 236 205 48 chr3 194230350 194231261 -33293317 + L2 LINE L2 2255 3313 0 351 0 0 0 chr3 194231543 194231582 -33292996 + (TG)n Simple_repeat Simple_repeat 1 39 0 2366 92 3 0 chr3 194231659 194231962 -33292616 + AluSx SINE Alu 2 305 -7 1714 172 23 10 chr3 194231995 194232303 -33292275 + AluJo SINE Alu 1 312 0 2624 216 75 57 chr3 194232580 194233547 -33291031 + L1MDa LINE L1 17 965 -5575 2295 119 0 3 chr3 194233547 194233858 -33290720 + AluSx SINE Alu 1 310 -2 2624 216 75 57 chr3 194233858 194233898 -33290680 + L1MDa LINE L1 965 1003 -5537 577 254 8 16 chr3 194233898 194234020 -33290558 + FLAM_A SINE Alu 1 121 -12 2624 216 75 57 chr3 194234020 194234120 -33290458 + L1MDa LINE L1 1003 1100 -5440 2221 123 3 0 chr3 194234120 194234422 -33290156 - AluSx SINE Alu -9 303 1 2624 216 75 57 chr3 194234422 194234465 -33290113 + L1MDa LINE L1 1100 1349 -5191 836 264 63 74 chr3 194234487 194234754 -33289824 - L1MC4a LINE L1 -302 5819 5627 1694 167 37 0 chr3 194234754 194235023 -33289555 - AluJo SINE Alu -23 289 11 836 264 63 74 chr3 194235023 194235223 -33289355 - L1MC4a LINE L1 -494 5627 5426 279 187 0 0 chr3 194235232 194235298 -33289280 - Alu SINE Alu -8 294 251 285 288 26 41 chr3 194236606 194236803 -33287775 - AluJ/F(R)AM SINE Alu -90 212 129 259 235 0 0 chr3 194236802 194236863 -33287715 - AluJ/monomer SINE Alu -251 52 1 * 2168 125 0 0 chr3 194236925 194237222 -33287356 + AluSx SINE Alu 1 297 -15 1511 158 25 42 chr3 194237315 194237600 -33286978 + AluJo SINE Alu 1 280 -32 189 111 0 74 chr3 194237600 194237654 -33286924 + (GGAAA)n Simple_repeat Simple_repeat 3 52 0 2346 62 38 0 chr3 194237930 194238222 -33286356 + AluY SINE Alu 1 303 -8 1013 195 72 18 chr3 194238348 194238569 -33286009 - MER46A DNA MER2_type -1 235 3 944 215 117 31 chr3 194239716 194239734 -33284844 + L1MC4 LINE L1 7690 7705 -337 828 185 133 46 chr3 194239734 194239929 -33284649 + MER20 DNA MER1_type 5 216 -3 944 215 117 31 chr3 194239929 194240235 -33284343 + L1MC4 LINE L1 7705 8042 0 26 74 0 0 chr3 194241655 194241709 -33282869 + AT_rich Low_complexity Low_complexity 1 54 0 2228 88 0 16 chr3 194242356 194242663 -33281915 + AluSc SINE Alu 1 302 -7 338 284 91 7 chr3 194242670 194242875 -33281703 + L1MC/D LINE L1 5341 5572 -2213 790 184 34 45 chr3 194242940 194243119 -33281459 + MER3 DNA MER1_type 31 207 -2 270 255 59 20 chr3 194243246 194243348 -33281230 + HAL1b LINE L1 1253 6119 -2 2053 142 0 13 chr3 194243357 194243673 -33280905 + AluSx SINE Alu 1 312 0 23 0 0 0 chr3 194243711 194243734 -33280844 + AT_rich Low_complexity Low_complexity 1 23 0 1383 173 107 7 chr3 194244812 194245084 -33279494 + AluJo SINE Alu 1 299 -13 2332 80 0 7 chr3 194245090 194245390 -33279188 + AluSc SINE Alu 1 298 -11 2273 117 0 0 chr3 194245393 194245693 -33278885 + AluSg SINE Alu 1 300 -10 584 276 27 16 chr3 194246021 194246206 -33278372 + MIR SINE MIR 76 262 0 295 352 66 53 chr3 194246206 194246433 -33278145 - MIR SINE MIR -13 249 20 2097 126 0 0 chr3 194246827 194247113 -33277465 - AluSq SINE Alu -26 287 2 2120 145 0 0 chr3 194247114 194247418 -33277160 - AluJb SINE Alu -8 304 1 1406 213 136 14 chr3 194247452 194247588 -33276990 + MSTD LTR MaLR 1 119 -277 2464 28 41 0 chr3 194247588 194247878 -33276700 - AluY SINE Alu -9 302 1 1406 213 136 14 chr3 194247878 194248094 -33276484 + MSTD LTR MaLR 119 396 0 186 43 0 0 chr3 194248287 194248310 -33276268 + (TGG)n Simple_repeat Simple_repeat 3 25 0 201 167 0 0 chr3 194249581 194249617 -33274961 + A-rich Low_complexity Low_complexity 1 36 0 1432 183 39 23 chr3 194249622 194249928 -33274650 + AluJo SINE Alu 1 311 -1 21 0 0 0 chr3 194251197 194251218 -33273360 + GC_rich Low_complexity Low_complexity 1 21 0 706 153 51 0 chr3 194251463 194251581 -33272997 + FLAM_C SINE Alu 5 128 -5 222 37 0 0 chr3 194251585 194251612 -33272966 + (TAA)n Simple_repeat Simple_repeat 2 28 0 1179 161 5 0 chr3 194252124 194252310 -33272268 + AluJb SINE Alu 1 187 -125 1986 134 3 3 chr3 194252739 194253045 -33271533 + AluSx SINE Alu 1 306 -6 2268 89 0 3 chr3 194253276 194253567 -33271011 + AluSx SINE Alu 3 292 -20 296 339 69 29 chr3 194253695 194253869 -33270709 - MIR SINE MIR -68 194 14 2261 98 3 3 chr3 194253944 194254241 -33270337 + AluSx SINE Alu 1 297 -15 643 130 0 0 chr3 194254501 194254593 -33269985 + AluSg/x SINE Alu 209 300 -10 2230 72 7 10 chr3 194254638 194254928 -33269650 - AluSc SINE Alu -20 289 1 1666 133 76 8 chr3 194255175 194255439 -33269139 - AluJb SINE Alu -24 288 7 216 0 0 0 chr3 194255688 194255712 -33268866 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2065 121 3 3 chr3 194257333 194257623 -33266955 - AluSx SINE Alu -22 290 1 2907 165 59 75 chr3 194257624 194257730 -33266848 - L1M4b LINE L1 -5186 1673 1567 2164 124 0 10 chr3 194257730 194258037 -33266541 - AluSg SINE Alu -6 304 1 2907 165 59 75 chr3 194258037 194258439 -33266139 - L1M4b LINE L1 -5292 1567 1176 2432 60 7 13 chr3 194258439 194258738 -33265840 - AluY SINE Alu -10 301 5 2907 165 59 75 chr3 194258738 194258919 -33265659 - L1M4b LINE L1 -5683 1176 994 346 247 47 0 chr3 194258925 194259010 -33265568 - L1M4b LINE L1 -6761 98 10 2505 68 7 0 chr3 194259201 194259509 -33265069 + AluY SINE Alu 1 310 -1 251 0 59 0 chr3 194260201 194260235 -33264343 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 2014 121 0 0 chr3 194260237 194260518 -33264060 - AluSx SINE Alu -31 281 1 2223 114 7 0 chr3 194260526 194260832 -33263746 - AluSp SINE Alu -5 308 1 1629 177 3 108 chr3 194260847 194261236 -33263342 - MER7A DNA MER2_type 0 346 1 2008 112 3 7 chr3 194261667 194261976 -33262602 - AluSx SINE Alu 0 308 1 23 33 0 0 chr3 194261986 194262016 -33262562 + AT_rich Low_complexity Low_complexity 1 30 0 2294 103 7 0 chr3 194262311 194262612 -33261966 - AluSq SINE Alu -10 303 1 205 205 26 0 chr3 194262680 194262719 -33261859 + L2 LINE L2 3264 3303 -10 198 245 49 88 chr3 194262742 194262844 -33261734 + MIR SINE MIR 121 218 -44 1821 147 0 67 chr3 194262844 194262978 -33261600 + AluJb SINE Alu 1 142 -170 2443 74 3 0 chr3 194262978 194263287 -33261291 + AluY SINE Alu 1 310 -1 1821 147 0 67 chr3 194263287 194263464 -33261114 + AluJb SINE Alu 142 291 -21 988 249 65 25 chr3 194263468 194263943 -33260635 - L1 LINE L1 -2032 4114 3620 1318 213 30 33 chr3 194264046 194264380 -33260198 - L1M4 LINE L1 -2317 3829 3497 2238 106 0 3 chr3 194264380 194264683 -33259895 + AluSc SINE Alu 1 302 -7 1373 202 4 4 chr3 194264690 194264947 -33259631 + AluJo SINE Alu 33 289 -23 3894 213 36 47 chr3 194264961 194266083 -33258495 - L1M4 LINE L1 -2654 3492 2359 1117 180 0 17 chr3 194266083 194266261 -33258317 - FAM SINE Alu 0 175 1 3894 213 36 47 chr3 194266261 194266347 -33258231 - L1M4 LINE L1 -3787 2359 2274 2252 120 0 0 chr3 194266347 194266647 -33257931 - AluSx SINE Alu -10 302 3 3894 213 36 47 chr3 194266647 194266797 -33257781 - L1M4 LINE L1 -3872 2274 2160 2047 118 7 0 chr3 194266799 194267110 -33257468 + AluSx SINE Alu 1 313 0 2237 95 10 3 chr3 194267117 194267412 -33257166 + AluSx SINE Alu 1 297 -15 268 303 91 23 chr3 194267536 194267668 -33256910 - L2 LINE L2 -584 2730 2590 2594 43 0 0 chr3 194267670 194267969 -33256609 + AluY SINE Alu 1 299 -12 833 152 7 0 chr3 194268001 194268139 -33256439 - MER3 DNA MER1_type -70 139 1 1451 193 43 7 chr3 194268154 194268455 -33256123 + MER58B DNA MER1_type 1 312 -29 2269 94 0 3 chr3 194268456 194268755 -33255823 - AluY SINE Alu -13 298 1 290 228 174 60 chr3 194268982 194269131 -33255447 - MIR SINE MIR 0 262 97 * 727 241 227 23 chr3 194269129 194269575 -33255003 - L2 LINE L2 -1 3312 2708 934 81 0 0 chr3 194269691 194269814 -33254764 + AluY SINE Alu 178 300 -11 3645 184 36 51 chr3 194269881 194270875 -33253703 + L1MB7 LINE L1 4308 5277 -907 1615 199 33 13 chr3 194270875 194271177 -33253401 + AluJo SINE Alu 1 308 -4 3645 184 36 51 chr3 194271177 194271428 -33253150 + L1MB7 LINE L1 5277 5530 -654 1111 169 0 0 chr3 194271428 194271600 -33252978 + AluJo SINE Alu 3 174 -138 1013 200 36 0 chr3 194271604 194271824 -33252754 + L1MB7 LINE L1 5930 6157 -27 745 97 0 136 chr3 194271839 194271994 -33252584 - AluSq SINE Alu -29 284 151 766 176 8 0 chr3 194272094 194272225 -33252353 - FLAM_C SINE Alu 0 133 2 2665 42 0 0 chr3 194272491 194272802 -33251776 - AluY SINE Alu 0 311 1 375 298 54 99 chr3 194273891 194274244 -33250334 - L1M2 LINE L1 -5614 1235 899 2167 41 4 0 chr3 194275164 194275432 -33249146 - L1PA4 LINE L1 0 6155 5887 2222 129 0 0 chr3 194275760 194276071 -33248507 - AluSx SINE Alu -1 311 1 905 134 0 22 chr3 194276820 194276954 -33247624 - FLAM_C SINE Alu -1 132 2 2147 119 3 3 chr3 194277148 194277460 -33247118 - AluSx SINE Alu 0 312 1 251 302 114 89 chr3 194278526 194278841 -33245737 - L2 LINE L2 -9 3263 2941 296 306 229 28 chr3 194278911 194279379 -33245199 - L2 LINE L2 -452 2862 2301 185 222 0 56 chr3 194279390 194279444 -33245134 - L2 LINE L2 -12 3301 3251 1580 139 105 8 chr3 194279565 194279823 -33244755 + AluJb SINE Alu 1 283 -29 441 158 0 0 chr3 194279823 194279905 -33244673 + (CA)n Simple_repeat Simple_repeat 1 82 0 1660 146 28 74 chr3 194279955 194280318 -33244260 - L1PB4 LINE L1 -4 6152 5807 1377 177 83 19 chr3 194280579 194280844 -33243734 - AluJb SINE Alu -30 282 1 1157 150 0 0 chr3 194281413 194281580 -33242998 - AluSg/x SINE Alu -12 300 134 2094 128 3 0 chr3 194281580 194281877 -33242701 - AluSx SINE Alu -14 298 1 392 305 74 42 chr3 194281977 194282167 -33242411 - L1M4 LINE L1 -1221 4925 4730 2281 113 0 3 chr3 194282198 194282508 -33242070 - AluSx SINE Alu -3 309 1 185 0 40 0 chr3 194282695 194282720 -33241858 + (TTTA)n Simple_repeat Simple_repeat 2 27 0 2295 97 0 0 chr3 194282724 194283012 -33241566 - AluSx SINE Alu -24 288 1 335 94 141 0 chr3 194283105 194283169 -33241409 - LTR64 LTR ERVK 0 558 486 453 131 0 0 chr3 194283189 194283250 -33241328 + AluJ/FRAM SINE Alu 230 290 -22 1659 188 10 3 chr3 194283304 194283597 -33240981 - AluJo SINE Alu -17 295 1 582 214 0 0 chr3 194283604 194283716 -33240862 - AluJb SINE Alu -3 309 198 1292 175 119 22 chr3 194283820 194284088 -33240490 - AluJo SINE Alu -18 294 1 455 203 52 33 chr3 194284257 194284410 -33240168 - L1MC4 LINE L1 -731 7311 7156 2129 137 0 0 chr3 194284975 194285268 -33239310 - AluSx SINE Alu -19 293 1 2312 97 10 0 chr3 194285279 194285578 -33239000 - AluSp SINE Alu -11 302 1 26 50 0 0 chr3 194285972 194286012 -33238566 + AT_rich Low_complexity Low_complexity 1 40 0 1208 115 194 72 chr3 194286036 194286314 -33238264 - AluSx SINE Alu 0 312 1 2309 101 0 3 chr3 194286814 194287112 -33237466 - AluSg SINE Alu -13 297 1 805 189 0 0 chr3 194287200 194287332 -33237246 - FLAM_C SINE Alu 0 133 2 2115 126 3 0 chr3 194287355 194287648 -33236930 - AluSx SINE Alu -18 294 1 1371 148 100 24 chr3 194287841 194288111 -33236467 + AluJo SINE Alu 14 302 0 234 264 123 18 chr3 194288114 194288277 -33236301 + L1M4c LINE L1 1467 1646 -4738 1126 149 48 28 chr3 194288289 194288538 -33236040 + L1MB4 LINE L1 5927 6180 0 1937 147 6 32 chr3 194288592 194288733 -33235845 + AluJb SINE Alu 2 145 -167 2138 96 0 81 chr3 194288733 194289066 -33235512 + AluSq SINE Alu 1 306 -7 1937 147 6 32 chr3 194289066 194289238 -33235340 + AluJb SINE Alu 145 307 -5 536 212 150 0 chr3 194289347 194289460 -33235118 + FLAM_A SINE Alu 1 130 -3 238 182 0 36 chr3 194289491 194289546 -33235032 + L1ME1 LINE L1 5947 5999 -167 656 205 103 5 chr3 194289750 194289935 -33234643 - MER21B LTR ERV1 -48 815 613 1388 165 202 59 chr3 194290026 194290327 -33234251 + LTR29 LTR ERV1 62 319 -303 776 41 21 0 chr3 194290327 194290424 -33234154 - HY3 scRNA scRNA -2 99 1 1388 165 202 59 chr3 194290424 194290613 -33233965 + LTR29 LTR ERV1 319 622 0 1189 248 20 37 chr3 194290657 194291012 -33233566 - MER21B LTR ERV1 -382 481 133 699 249 45 14 chr3 194291422 194291643 -33232935 + Charlie2 DNA MER1_type 1 228 -2554 1218 226 150 38 chr3 194291645 194292124 -33232454 + L1ME2 LINE L1 5609 6141 -23 394 200 61 127 chr3 194292004 194292169 -33232409 + L1MA10 LINE L1 6174 6327 -7 * 2134 100 0 0 chr3 194292235 194292546 -33232032 + AluSx SINE Alu 1 311 0 998 183 11 0 chr3 194292735 194292910 -33231668 - AluJb SINE Alu 0 312 136 943 188 45 72 chr3 194293024 194293089 -33231489 + AluJo SINE Alu 66 131 -181 2015 100 70 0 chr3 194293089 194293360 -33231218 - AluSp SINE Alu -23 290 1 943 188 45 72 chr3 194293360 194293517 -33231061 + AluJo SINE Alu 131 282 -30 255 79 0 0 chr3 194293517 194293555 -33231023 + (TC)n Simple_repeat Simple_repeat 1 38 0 2840 157 53 26 chr3 194293585 194294151 -33230427 + L1MA7 LINE L1 5707 6287 -4 1601 176 10 59 chr3 194295035 194295341 -33229237 - AluJb SINE Alu -21 291 1 1114 99 0 6 chr3 194295879 194296040 -33228538 - L1PB1 LINE L1 0 6151 5992 1599 175 17 24 chr3 194296531 194296828 -33227750 - AluJb SINE Alu -4 308 14 2115 126 3 0 chr3 194297021 194297314 -33227264 + AluSx SINE Alu 1 294 -18 805 189 0 0 chr3 194297337 194297469 -33227109 + FLAM_C SINE Alu 2 133 0 2309 101 0 3 chr3 194297557 194297855 -33226723 + AluSg SINE Alu 1 297 -13 1208 115 194 72 chr3 194298355 194298633 -33225945 + AluSx SINE Alu 1 312 0 26 50 0 0 chr3 194298657 194298697 -33225881 + AT_rich Low_complexity Low_complexity 1 40 0 2312 97 10 0 chr3 194299091 194299390 -33225188 + AluSp SINE Alu 1 302 -11 2129 137 0 0 chr3 194299401 194299694 -33224884 + AluSx SINE Alu 1 293 -19 455 203 52 33 chr3 194300259 194300412 -33224166 + L1MC4 LINE L1 7156 7311 -731 1270 179 119 22 chr3 194300581 194300849 -33223729 + AluJo SINE Alu 1 294 -18 582 214 0 0 chr3 194300953 194301065 -33223513 + AluJb SINE Alu 198 309 -3 1659 188 10 3 chr3 194301072 194301365 -33223213 + AluJo SINE Alu 1 295 -17 453 131 0 0 chr3 194301419 194301480 -33223098 - AluJ/FRAM SINE Alu -22 290 230 335 94 141 0 chr3 194301500 194301564 -33223014 + LTR64 LTR ERVK 486 558 0 2295 97 0 0 chr3 194301657 194301945 -33222633 + AluSx SINE Alu 1 288 -24 185 0 40 0 chr3 194301949 194301974 -33222604 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 2281 113 0 3 chr3 194302161 194302471 -33222107 + AluSx SINE Alu 1 309 -3 392 305 74 42 chr3 194302502 194302692 -33221886 + L1M4 LINE L1 4730 4925 -1221 2108 125 3 0 chr3 194302792 194303089 -33221489 + AluSx SINE Alu 1 298 -14 1157 150 0 0 chr3 194303089 194303256 -33221322 + AluSg/x SINE Alu 134 300 -12 408 187 5 80 chr3 194303987 194304174 -33220404 + AluSp SINE Alu 49 221 -92 2386 100 0 0 chr3 194305459 194305758 -33218820 + AluSx SINE Alu 1 299 -13 2213 99 0 45 chr3 194305760 194306072 -33218506 + AluSc SINE Alu 1 298 -11 279 284 28 55 chr3 194306371 194306480 -33218098 - L2 LINE L2 0 3313 3208 230 286 0 0 chr3 194306781 194306837 -33217741 + CT-rich Low_complexity Low_complexity 4 59 0 786 111 17 29 chr3 194306837 194307009 -33217569 + (TTCC)n Simple_repeat Simple_repeat 2 171 0 338 261 140 9 chr3 194307009 194307231 -33217347 - L1MC5 LINE L1 -167 7794 7544 446 281 174 16 chr3 194308728 194309107 -33215471 - MLT1J LTR MaLR -40 471 1 276 314 29 0 chr3 194310311 194310413 -33214165 - MIR SINE MIR -69 193 89 500 167 0 0 chr3 194310705 194310783 -33213795 - FLAM_A SINE Alu -27 115 38 21 0 0 0 chr3 194311043 194311064 -33213514 + AT_rich Low_complexity Low_complexity 1 21 0 189 74 0 0 chr3 194312041 194312068 -33212510 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2052 109 0 0 chr3 194312077 194312353 -33212225 - AluSx SINE Alu -36 276 1 920 163 69 0 chr3 194312566 194312768 -33211810 + L1MA4 LINE L1 6084 6299 -1 856 126 0 8 chr3 194313715 194313834 -33210744 + FLAM_C SINE Alu 6 123 -20 1286 203 29 61 chr3 194313969 194314185 -33210393 + MER58B DNA MER1_type 5 207 -2213 1752 158 0 55 chr3 194314185 194314513 -33210065 - AluJb SINE Alu -2 310 1 1286 203 29 61 chr3 194314513 194314641 -33209937 + MER58B DNA MER1_type 207 338 -3 1057 174 13 61 chr3 194321709 194321939 -33202639 + MER20 DNA MER1_type 1 219 0 2358 110 0 0 chr3 194325983 194326284 -33198294 + AluSx SINE Alu 1 301 -11 233 196 39 0 chr3 194327569 194327620 -33196958 + MIR3 SINE MIR 150 202 -6 189 263 0 0 chr3 194328036 194328074 -33196504 + L3 LINE CR1 1507 1544 -33 2344 97 10 0 chr3 194328338 194328648 -33195930 - AluSq SINE Alu 0 313 1 2059 136 7 3 chr3 194329098 194329399 -33195179 - AluSx SINE Alu -10 302 1 21 57 0 0 chr3 194330612 194330647 -33193931 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 194331628 194331650 -33192928 + AT_rich Low_complexity Low_complexity 1 22 0 814 258 59 39 chr3 194331723 194331979 -33192599 + MIR SINE MIR 2 262 0 288 228 163 0 chr3 194332008 194332131 -33192447 - MER112 DNA MER1_type -11 249 107 628 196 131 6 chr3 194332427 194332595 -33191983 + MER20 DNA MER1_type 30 218 -1 198 91 0 0 chr3 194335276 194335309 -33189269 + (CAAAAA)n Simple_repeat Simple_repeat 2 34 0 1931 153 10 7 chr3 194335388 194335695 -33188883 + AluJo SINE Alu 1 308 -4 797 128 372 0 chr3 194335702 194335874 -33188704 - MER46A DNA MER2_type 0 236 1 2783 120 24 0 chr3 194336272 194336698 -33187880 + L1PA14 LINE L1 5716 6151 -10 1853 161 3 0 chr3 194337282 194337573 -33187005 + AluJb SINE Alu 1 292 -20 587 110 24 122 chr3 194338831 194338992 -33185586 - Charlie1b DNA MER1_type -179 344 200 2682 127 11 20 chr3 194338992 194339448 -33185130 - LTR22A LTR ERVK 0 458 7 659 106 48 0 chr3 194339451 194339555 -33185023 - HERVK22 LTR ERVK 0 6837 6729 2805 120 20 5 chr3 194339562 194340416 -33184162 - HERVK22 LTR ERVK -5932 905 3 2761 128 29 18 chr3 194340418 194340871 -33183707 - LTR22A LTR ERVK 0 458 1 363 228 26 26 chr3 194340873 194340987 -33183591 - Charlie1b DNA MER1_type -328 195 82 360 272 107 53 chr3 194341203 194341372 -33183206 - MIR SINE MIR -74 188 11 2125 113 0 16 chr3 194341447 194341756 -33182822 + AluSx SINE Alu 9 312 0 607 219 23 0 chr3 194342698 194342826 -33181752 + MLT1I LTR MaLR 232 362 -47 2121 131 0 6 chr3 194343027 194343339 -33181239 - AluSq SINE Alu -3 310 1 829 229 204 38 chr3 194343369 194343500 -33181078 + L1ME2 LINE L1 3026 3134 -3012 2001 153 0 3 chr3 194343500 194343807 -33180771 + AluJb SINE Alu 1 306 -6 829 229 204 38 chr3 194343807 194344094 -33180484 + L1ME2 LINE L1 3134 3372 -2774 2253 108 3 3 chr3 194344094 194344401 -33180177 + AluSx SINE Alu 1 307 -5 829 229 204 38 chr3 194344401 194344880 -33179698 + L1ME2 LINE L1 3372 4057 -2089 613 189 57 6 chr3 194344867 194345026 -33179552 + L1ME2 LINE L1 4911 5077 -1069 * 1741 187 0 20 chr3 194345076 194345381 -33179197 - AluJo SINE Alu -11 301 3 2568 159 17 5 chr3 194345414 194345835 -33178743 + MSTB LTR MaLR 1 426 0 311 188 16 0 chr3 194345843 194345907 -33178671 - MLT1C LTR MaLR -52 415 351 2179 130 0 0 chr3 194345908 194346215 -33178363 + AluSx SINE Alu 1 307 -5 886 264 59 31 chr3 194346216 194346407 -33178171 + L1ME2 LINE L1 5684 5868 -296 2627 124 9 52 chr3 194346407 194346486 -33178092 - MSTB LTR MaLR 0 426 345 2024 122 3 14 chr3 194346486 194346772 -33177806 - AluSx SINE Alu -29 283 1 2627 124 9 52 chr3 194346772 194347137 -33177441 - MSTB LTR MaLR -81 345 1 886 264 59 31 chr3 194347137 194347370 -33177208 + L1ME2 LINE L1 5868 6120 -44 255 239 0 33 chr3 194347390 194347482 -33177096 + L1ME LINE L1 5691 5779 -342 704 275 132 18 chr3 194347576 194348121 -33176457 + L1MC5 LINE L1 6957 7563 -398 672 107 10 10 chr3 194348169 194348272 -33176306 + MLT1B LTR MaLR 5 107 -283 744 188 125 0 chr3 194348305 194348481 -33176097 + MLT1B LTR MaLR 191 388 -2 279 226 26 78 chr3 194348516 194348631 -33175947 + L1MC5 LINE L1 7719 7827 -134 263 239 350 8 chr3 194348773 194348890 -33175688 + MER5A DNA MER1_type 11 167 -22 984 264 105 15 chr3 194348904 194349790 -33174788 + HAL1 LINE L1 217 1252 -1255 2156 111 3 32 chr3 194349828 194350143 -33174435 + AluSx SINE Alu 1 306 -6 248 167 0 33 chr3 194350144 194350204 -33174374 + L1MC5 LINE L1 7124 7181 -780 438 274 46 10 chr3 194350304 194350501 -33174077 + L1MC5 LINE L1 7309 7512 -449 1344 225 29 120 chr3 194350816 194350978 -33173600 + L1MC4a LINE L1 5262 5437 -2371 1971 140 7 0 chr3 194350978 194351264 -33173314 + AluJo SINE Alu 1 288 -24 1344 225 29 120 chr3 194351264 194351802 -33172776 + L1MC4a LINE L1 5437 5898 -1910 2557 55 3 0 chr3 194351844 194352152 -33172426 + AluY SINE Alu 1 309 -2 759 163 24 0 chr3 194352231 194352354 -33172224 + FLAM_A SINE Alu 2 127 -6 751 240 148 46 chr3 194352605 194353084 -33171494 + HAL1 LINE L1 1573 2100 -407 36 23 0 0 chr3 194353097 194353140 -33171438 + AT_rich Low_complexity Low_complexity 1 43 0 2429 90 0 3 chr3 194353465 194353776 -33170802 + AluSg SINE Alu 1 310 0 25 0 0 0 chr3 194354243 194354268 -33170310 + AT_rich Low_complexity Low_complexity 1 25 0 2448 80 0 6 chr3 194354717 194355031 -33169547 - AluSx SINE Alu 0 312 1 312 70 0 0 chr3 194355178 194355221 -33169357 + (TTCA)n Simple_repeat Simple_repeat 4 46 0 370 125 0 0 chr3 194355228 194355292 -33169286 - AluS SINE Alu -16 286 223 317 118 59 0 chr3 194356164 194356232 -33168346 + HsTC2 DNA Tc2 1825 1896 -2 806 126 0 49 chr3 194356273 194356416 -33168162 - FLAM_C SINE Alu -7 136 1 308 294 103 14 chr3 194356440 194356586 -33167992 + L1ME4a LINE L1 5790 5948 -173 1583 268 155 65 chr3 194356823 194356981 -33167597 - L1MC4a LINE L1 -129 7679 7537 2416 91 0 0 chr3 194356981 194357289 -33167289 - AluSx SINE Alu -3 309 2 1583 268 155 65 chr3 194357289 194357480 -33167098 - L1MC4a LINE L1 -271 7537 7365 1777 155 6 44 chr3 194357480 194357797 -33166781 - AluJo SINE Alu -2 310 6 1583 268 155 65 chr3 194357797 194358386 -33166192 - L1MC4a LINE L1 -443 7365 6830 1458 114 32 0 chr3 194358386 194358605 -33165973 + L1PA11 LINE L1 5948 6173 -1 1583 268 155 65 chr3 194358605 194359222 -33165356 - L1MC4a LINE L1 -978 6830 6270 375 105 0 0 chr3 194359222 194359279 -33165299 + (TG)n Simple_repeat Simple_repeat 1 57 0 1583 268 155 65 chr3 194359279 194359668 -33164910 - L1MC4a LINE L1 -1538 6270 5557 228 242 95 21 chr3 194359796 194359891 -33164687 + MLT1J1 LTR MaLR 1 102 -344 784 136 91 0 chr3 194360850 194360982 -33163596 - U4 snRNA snRNA -1 144 1 2438 58 0 0 chr3 194362349 194362643 -33161935 + AluY SINE Alu 1 294 -17 1764 166 44 23 chr3 194363139 194363189 -33161389 + L1MB3 LINE L1 5782 5829 -354 2213 128 0 0 chr3 194363189 194363494 -33161084 + AluSx SINE Alu 1 305 -7 1764 166 44 23 chr3 194363494 194363829 -33160749 + L1MB3 LINE L1 5829 6175 -8 356 269 0 67 chr3 194363957 194364076 -33160502 + L2 LINE L2 2926 3036 -277 222 37 0 0 chr3 194364158 194364185 -33160393 + (CA)n Simple_repeat Simple_repeat 2 28 0 3721 216 103 15 chr3 194364411 194366057 -33158521 + L1ME LINE L1 3869 5677 -487 2162 128 0 0 chr3 194366057 194366354 -33158224 + AluSx SINE Alu 1 297 -15 3721 216 103 15 chr3 194366354 194366382 -33158196 + L1ME LINE L1 5677 5701 -463 694 224 48 64 chr3 194366376 194366529 -33158049 + L1ME1 LINE L1 5075 5222 -924 * 2262 125 0 0 chr3 194366529 194366840 -33157738 - AluSx SINE Alu -1 311 1 694 224 48 64 chr3 194366840 194366981 -33157597 + L1ME1 LINE L1 5222 5364 -782 2696 207 23 22 chr3 194367021 194367663 -33156915 + L1ME1 LINE L1 5350 5992 -174 1582 137 12 95 chr3 194367715 194368051 -33156527 + AluSq SINE Alu 5 312 -1 1291 96 0 0 chr3 194368053 194368220 -33156358 + AluSq SINE Alu 131 297 -16 633 255 31 86 chr3 194368765 194369091 -33155487 + L1ME4a LINE L1 5599 5906 -215 391 216 41 0 chr3 194369372 194369469 -33155109 - MER5A DNA MER1_type -80 109 9 309 282 74 25 chr3 194369625 194369788 -33154790 + L1ME LINE L1 5604 5774 -347 21 0 0 0 chr3 194369845 194369866 -33154712 + AT_rich Low_complexity Low_complexity 1 21 0 2408 101 8 48 chr3 194369866 194370158 -33154420 - L1PB3 LINE L1 -8 6146 5871 2157 110 31 0 chr3 194370158 194370450 -33154128 + AluSx SINE Alu 5 305 -7 2408 101 8 48 chr3 194370450 194370532 -33154046 - L1PB3 LINE L1 -283 5871 5787 950 101 1 3 chr3 194370559 194370706 -33153872 - L1PB3 LINE L1 -351 5814 5670 31 26 0 0 chr3 194370772 194370810 -33153768 + AT_rich Low_complexity Low_complexity 1 38 0 677 219 100 13 chr3 194372269 194372485 -33152093 - MIR SINE MIR -25 237 7 1920 92 33 110 chr3 194372663 194373000 -33151578 - AluY SINE Alu 0 311 1 401 258 207 44 chr3 194373854 194373930 -33150648 - Charlie8 DNA MER1_type -1899 518 456 2090 101 4 0 chr3 194373930 194374206 -33150372 - AluSp SINE Alu -2 311 35 401 258 207 44 chr3 194374206 194374424 -33150154 - Charlie8 DNA MER1_type -1961 456 176 207 262 107 19 chr3 194374688 194374791 -33149787 + MIR SINE MIR 77 188 -74 2053 113 7 7 chr3 194374801 194375111 -33149467 + AluSq SINE Alu 1 313 0 2330 79 0 0 chr3 194375120 194375398 -33149180 + AluY SINE Alu 19 296 -15 1396 138 107 52 chr3 194375430 194375579 -33148999 - AluJo SINE Alu -6 306 167 180 0 0 0 chr3 194375579 194375599 -33148979 + (TTA)n Simple_repeat Simple_repeat 2 21 0 1396 138 107 52 chr3 194375599 194375739 -33148839 - AluJo SINE Alu -145 167 1 1532 136 0 50 chr3 194375834 194376076 -33148502 - AluJb SINE Alu -2 310 81 2311 43 75 0 chr3 194376703 194376984 -33147594 + AluY SINE Alu 1 302 -9 452 191 85 124 chr3 194378006 194378081 -33146497 - L1MC5 LINE L1 -47 7914 7838 1691 66 4 0 chr3 194378081 194378307 -33146271 - L1PA8 LINE L1 -2 6170 5944 452 191 85 124 chr3 194378307 194378558 -33146020 - L1MC5 LINE L1 -123 7838 7607 2409 68 3 3 chr3 194378558 194378854 -33145724 - AluSx SINE Alu -14 298 3 452 191 85 124 chr3 194378854 194378971 -33145607 - L1MC5 LINE L1 -354 7607 7487 23 0 0 0 chr3 194379533 194379556 -33145022 + GC_rich Low_complexity Low_complexity 1 23 0 240 86 0 0 chr3 194380167 194380202 -33144376 + (CCCCG)n Simple_repeat Simple_repeat 2 36 0 2298 95 6 22 chr3 194380658 194380975 -33143603 + AluSx SINE Alu 1 312 0 244 178 0 0 chr3 194381138 194381183 -33143395 - L2 LINE L2 -6 3307 3263 2137 116 3 0 chr3 194381209 194381514 -33143064 + AluSx SINE Alu 1 306 0 3538 153 80 13 chr3 194381591 194382264 -33142314 - LTR62 LTR ERVK -1 718 1 223 299 134 0 chr3 194382624 194382751 -33141827 - MIR SINE MIR 0 262 119 2513 90 0 0 chr3 194382751 194383061 -33141517 + AluSq SINE Alu 1 310 -3 597 219 19 0 chr3 194383418 194383523 -33141055 + Tigger3(Golem) DNA MER2_type 2 108 -2921 * 3597 101 148 30 chr3 194383514 194384175 -33140403 + Tigger3(Golem) DNA MER2_type 2277 3015 -14 232 257 122 0 chr3 194384180 194384254 -33140324 + MLT1J LTR MaLR 54 136 -375 302 275 66 30 chr3 194384359 194384526 -33140052 + MLT1J LTR MaLR 11 183 -328 * 372 202 39 48 chr3 194384497 194384601 -33139977 + MLT1L LTR MaLR 178 280 -335 1814 91 28 0 chr3 194384870 194385123 -33139455 + MER49 LTR ERV1 1 260 -663 653 103 21 10 chr3 194385141 194385238 -33139340 + MER4A LTR ERV1 1 98 -566 463 164 0 0 chr3 194385285 194385358 -33139220 + MER4A LTR ERV1 373 445 -219 1299 190 102 55 chr3 194385364 194385786 -33138792 - LTR7 LTR ERV1 -8 442 1 1418 136 4 38 chr3 194385790 194386026 -33138552 + MER4B LTR ERV1 383 610 0 3136 144 50 59 chr3 194386029 194386394 -33138184 + MER49 LTR ERV1 324 691 -232 3707 108 0 10 chr3 194386394 194386910 -33137668 + MER9 LTR ERVK 1 511 0 3136 144 50 59 chr3 194386910 194387104 -33137474 + MER49 LTR ERV1 691 879 -44 2439 63 0 26 chr3 194387104 194387407 -33137171 - AluY SINE Alu -16 295 1 3136 144 50 59 chr3 194387407 194387452 -33137126 + MER49 LTR ERV1 879 923 0 185 312 75 32 chr3 194387495 194387588 -33136990 + MIR SINE MIR 5 101 -161 2112 130 3 13 chr3 194388028 194388343 -33136235 - AluSx SINE Alu 0 312 1 332 265 41 0 chr3 194388554 194388652 -33135926 - L1ME LINE L1 -331 5790 5689 1124 237 65 70 chr3 194388676 194388871 -33135707 + L2 LINE L2 2543 2738 -575 1960 143 21 0 chr3 194388871 194389151 -33135427 + AluJb SINE Alu 1 286 -26 1124 237 65 70 chr3 194389151 194389711 -33134867 + L2 LINE L2 2738 3294 -19 313 211 106 49 chr3 194389730 194389853 -33134725 - L1ME LINE L1 -468 5653 5524 725 207 0 15 chr3 194389887 194390022 -33134556 - FLAM_C SINE Alu 0 133 1 396 277 84 28 chr3 194390047 194390260 -33134318 - LTR67 LTR ERVL -2 555 331 652 248 24 44 chr3 194390311 194390358 -33134220 - HAL1b LINE L1 -580 768 722 4098 125 16 13 chr3 194390358 194390990 -33133588 + MER41B LTR ERV1 1 634 -1 652 248 24 44 chr3 194390990 194391148 -33133430 - HAL1b LINE L1 -626 722 567 2372 101 0 7 chr3 194391449 194391755 -33132823 - AluSx SINE Alu -8 304 1 2289 115 0 0 chr3 194392135 194392431 -33132147 + AluSq SINE Alu 1 296 -17 620 182 129 6 chr3 194392710 194392880 -33131698 - MIR SINE MIR -12 250 60 1216 36 0 0 chr3 194393042 194393179 -33131399 - AluSg/x SINE Alu -8 302 166 5177 82 51 21 chr3 194393316 194394060 -33130518 - MER4E LTR ERV1 0 766 1 1310 174 15 92 chr3 194394085 194394413 -33130165 + MER33 DNA MER1_type 1 303 -21 465 303 90 0 chr3 194395082 194395316 -33129262 + MIR SINE MIR 8 262 0 2358 170 61 51 chr3 194395480 194395973 -33128605 + LTR54 LTR ERV1 2 499 -11 386 331 68 56 chr3 194396200 194396703 -33127875 - L2 LINE L2 -6 3266 2762 692 143 54 48 chr3 194396736 194396904 -33127674 + L1MC5 LINE L1 7757 7925 -36 331 327 76 5 chr3 194396910 194397133 -33127445 - L2 LINE L2 -613 2701 2463 2137 111 10 33 chr3 194397179 194397486 -33127092 - AluSx SINE Alu -12 300 1 373 257 88 0 chr3 194397682 194397795 -33126783 - MIR SINE MIR -53 209 87 2278 119 0 0 chr3 194398400 194398712 -33125866 - AluSx SINE Alu 0 312 1 1016 202 22 18 chr3 194398717 194398945 -33125633 - L1MC5 LINE L1 -36 7925 7697 291 278 104 26 chr3 194399311 194399426 -33125152 + L2 LINE L2 3148 3271 -1 2574 162 28 28 chr3 194399536 194400031 -33124547 + MLT1D LTR MaLR 7 501 -4 2094 132 0 0 chr3 194400123 194400404 -33124174 + AluSx SINE Alu 1 281 -31 2259 94 13 0 chr3 194400404 194400702 -33123876 - AluSx SINE Alu -9 303 1 354 209 99 11 chr3 194400879 194400970 -33123608 - MLT1K LTR MaLR -138 450 352 1258 182 0 18 chr3 194401301 194401521 -33123057 + MLT1C LTR MaLR 250 465 -2 591 252 8 0 chr3 194401522 194401649 -33122929 - LTR16C LTR ERVL -115 376 249 4710 156 10 35 chr3 194401652 194402533 -33122045 + L1MB7 LINE L1 5309 6168 -16 640 284 62 21 chr3 194402565 194402759 -33121819 - LTR16C LTR ERVL -230 261 60 432 160 0 75 chr3 194402998 194403019 -33121559 + L1M4 LINE L1 5454 5475 -709 7529 111 40 26 chr3 194403019 194403601 -33120977 - Tigger3b DNA MER2_type -1797 1231 659 2334 91 0 7 chr3 194403601 194403899 -33120679 - AluSg SINE Alu -14 296 1 7529 111 40 26 chr3 194403899 194404320 -33120258 - Tigger3b DNA MER2_type -2369 659 206 2225 88 3 7 chr3 194404320 194404614 -33119964 - AluSx SINE Alu -18 294 2 7529 111 40 26 chr3 194404614 194404822 -33119756 - Tigger3b DNA MER2_type -2822 206 2 432 160 0 75 chr3 194404822 194404894 -33119684 + L1M4 LINE L1 5475 5540 -644 1682 169 102 39 chr3 194405603 194405720 -33118858 - Charlie1b DNA MER1_type -2238 523 415 2312 109 0 10 chr3 194405720 194406033 -33118545 + AluSg SINE Alu 1 310 0 1682 169 102 39 chr3 194406033 194406046 -33118532 - Charlie1b DNA MER1_type -2346 415 404 1700 167 21 0 chr3 194406046 194406327 -33118251 + AluJo SINE Alu 9 295 -17 1682 169 102 39 chr3 194406327 194406657 -33117921 - Charlie1b DNA MER1_type -2357 404 33 2065 132 0 13 chr3 194406680 194406983 -33117595 - AluSx SINE Alu -13 299 1 1358 0 0 324 chr3 194407017 194407050 -33117528 - L1P5 LINE L1 -540 5614 5571 1603 163 6 78 chr3 194407050 194407204 -33117374 + AluJo SINE Alu 1 122 -190 2126 112 0 3 chr3 194407204 194407491 -33117087 + AluSx SINE Alu 4 289 -23 1603 163 6 78 chr3 194407491 194407656 -33116922 + AluJo SINE Alu 122 297 -15 1358 0 0 324 chr3 194407656 194408104 -33116474 - L1P5 LINE L1 -583 5571 5188 613 191 23 23 chr3 194408130 194408261 -33116317 - AluJo SINE Alu -174 138 8 418 189 21 0 chr3 194408270 194408365 -33116213 - L1M4 LINE L1 -981 5165 5069 2255 118 0 0 chr3 194408375 194408681 -33115897 - AluSx SINE Alu -6 306 1 1657 187 0 3 chr3 194409351 194409658 -33114920 + AluJb SINE Alu 1 306 0 321 221 12 105 chr3 194409774 194409946 -33114632 + L1MC4a LINE L1 5827 5982 -1826 1582 136 24 109 chr3 194409951 194410086 -33114492 + AluYb8 SINE Alu 1 146 -172 2475 80 0 6 chr3 194410086 194410399 -33114179 + AluY SINE Alu 1 311 0 1582 136 24 109 chr3 194410399 194410594 -33113984 + AluYb8 SINE Alu 146 303 -15 515 283 167 39 chr3 194410961 194411732 -33112846 + L2 LINE L2 1712 2581 -733 1774 159 3 20 chr3 194412234 194412536 -33112042 - AluJo SINE Alu -10 302 6 2485 69 0 7 chr3 194412726 194413030 -33111548 + AluY SINE Alu 1 302 -9 284 299 44 22 chr3 194413259 194413396 -33111182 + LTR67 LTR ERVL 410 549 -8 1663 54 0 5 chr3 194413508 194413712 -33110866 + L1PA6 LINE L1 5941 6143 -11 971 217 121 47 chr3 194414505 194414827 -33109751 + L1ME3A LINE L1 5810 6155 -15 2312 97 3 3 chr3 194415450 194415760 -33108818 - AluSq SINE Alu -3 310 1 194 33 67 0 chr3 194416001 194416031 -33108547 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 203 271 0 0 chr3 194416199 194416247 -33108331 + L2 LINE L2 3224 3271 -1 2205 94 14 3 chr3 194416631 194416919 -33107659 - AluSc SINE Alu -18 291 1 1866 170 80 27 chr3 194417761 194418063 -33106515 + MSTD LTR MaLR 1 328 -68 2238 119 0 0 chr3 194418063 194418358 -33106220 - AluSx SINE Alu -13 299 5 1866 170 80 27 chr3 194418358 194418431 -33106147 + MSTD LTR MaLR 328 396 0 832 290 47 16 chr3 194418716 194418971 -33105607 - MLT1K LTR MaLR -4 584 322 448 330 145 56 chr3 194419163 194419536 -33105042 + L2 LINE L2 2866 3271 -1 1681 182 10 17 chr3 194419594 194419890 -33104688 + AluJb SINE Alu 1 294 -18 1402 168 119 51 chr3 194420105 194420515 -33104063 + Charlie4a DNA MER1_type 1 438 -70 2175 99 0 7 chr3 194420515 194420822 -33103756 + AluSx SINE Alu 1 305 0 556 195 136 7 chr3 194421628 194421782 -33102796 - LTR33 LTR ERVL -347 174 1 233 241 111 0 chr3 194421855 194421909 -33102669 + L2 LINE L2 3211 3270 -2 321 155 35 0 chr3 194422086 194422144 -33102434 - MER82 DNA MER2_type 0 653 594 1904 181 135 5 chr3 194422172 194422615 -33101963 - MER82 DNA MER2_type -150 503 3 549 154 173 0 chr3 194425831 194425935 -33098643 + FRAM SINE Alu 1 122 -54 614 186 70 105 chr3 194426231 194426516 -33098062 + ORSL DNA AcHobo 1 275 0 1555 127 111 4 chr3 194426561 194426813 -33097765 - AluJo SINE Alu -12 300 22 259 145 14 58 chr3 194426817 194426886 -33097692 + (TCTA)n Simple_repeat Simple_repeat 1 66 0 589 258 0 0 chr3 194426887 194427007 -33097571 - FLAM_A SINE Alu -13 120 1 1025 209 28 0 chr3 194427988 194428170 -33096408 + AluJo SINE Alu 103 289 -23 391 70 38 70 chr3 194428173 194428358 -33096220 + (TA)n Simple_repeat Simple_repeat 2 180 0 1671 166 43 0 chr3 194428901 194429179 -33095399 + AluJo SINE Alu 1 290 -22 880 109 68 47 chr3 194429511 194429703 -33094875 + L1MA7 LINE L1 6094 6289 -2 21 0 0 0 chr3 194429705 194429726 -33094852 + AT_rich Low_complexity Low_complexity 1 21 0 418 103 0 0 chr3 194430155 194430223 -33094355 - MER116 DNA Mariner -12 68 1 239 315 124 0 chr3 194430429 194430518 -33094060 - MER5B DNA MER1_type -48 130 31 570 304 68 11 chr3 194430636 194430827 -33093751 + MIR SINE MIR 28 229 -33 1772 192 27 0 chr3 194430846 194431138 -33093440 - AluJb SINE Alu -12 300 1 1430 151 53 8 chr3 194431296 194431541 -33093037 + AluJb SINE Alu 30 285 -27 281 256 58 16 chr3 194431755 194431876 -33092702 - L1ME LINE L1 -422 5699 5574 2205 115 3 0 chr3 194432742 194433037 -33091541 + AluSx SINE Alu 1 296 -16 254 376 110 23 chr3 194433725 194433988 -33090590 + L2 LINE L2 2932 3217 -55 203 170 43 21 chr3 194434009 194434056 -33090522 + MER5B DNA MER1_type 1 48 -130 934 267 107 56 chr3 194434385 194434853 -33089725 + MLT1J LTR MaLR 4 495 -16 400 304 7 7 chr3 194435380 194435518 -33089060 + CT-rich Low_complexity Low_complexity 2 139 0 460 257 193 57 chr3 194436265 194436561 -33088017 + L2 LINE L2 2917 3252 -61 699 226 7 7 chr3 194439336 194439473 -33085105 + MIR SINE MIR 1 137 -125 2059 144 0 0 chr3 194439541 194439839 -33084739 - AluSx SINE Alu -14 298 1 2282 66 0 0 chr3 194440012 194440285 -33084293 - AluY SINE Alu -38 273 1 185 65 32 0 chr3 194440564 194440595 -33083983 + (GAAAA)n Simple_repeat Simple_repeat 4 35 0 22 56 0 0 chr3 194441010 194441046 -33083532 + AT_rich Low_complexity Low_complexity 1 36 0 1514 167 107 7 chr3 194441898 194442168 -33082410 - AluJo SINE Alu -15 297 1 2319 103 0 0 chr3 194442984 194443284 -33081294 - AluSx SINE Alu -12 300 1 2122 128 0 3 chr3 194444604 194444902 -33079676 - AluSx SINE Alu -14 298 2 1358 185 0 47 chr3 194445565 194445841 -33078737 + AluJb SINE Alu 11 273 -39 188 359 178 20 chr3 194445972 194446370 -33078208 - L2 LINE L2 -429 2885 2425 1623 168 13 26 chr3 194446911 194447214 -33077364 + AluJo SINE Alu 1 299 -13 442 248 71 28 chr3 194448568 194448709 -33075869 + MIR3 SINE MIR 14 160 -48 393 254 35 35 chr3 194449766 194449880 -33074698 - MIR SINE MIR -138 124 11 219 69 0 0 chr3 194451305 194451334 -33073244 + (CACCC)n Simple_repeat Simple_repeat 2 30 0 341 266 28 28 chr3 194451726 194451835 -33072743 - MER5A DNA MER1_type -3 186 78 268 318 8 71 chr3 194451925 194452051 -33072527 - MIR SINE MIR -65 143 26 1466 199 3 17 chr3 194452402 194452698 -33071880 - AluJo SINE Alu -17 295 4 303 256 73 79 chr3 194452698 194452862 -33071716 - L1ME4a LINE L1 -128 5993 5831 445 334 103 30 chr3 194453755 194454057 -33070521 + L2 LINE L2 2343 2666 -648 36 0 0 0 chr3 194454164 194454200 -33070378 + AT_rich Low_complexity Low_complexity 1 36 0 1768 167 7 7 chr3 194454347 194454653 -33069925 - AluJb SINE Alu -6 306 1 671 226 18 36 chr3 194454733 194454901 -33069677 - L2 LINE L2 0 3313 3149 227 200 0 0 chr3 194454901 194454946 -33069632 + MER8 DNA MER2_type 1 45 -194 984 220 108 24 chr3 194454984 194455280 -33069298 + MER2 DNA MER2_type 25 345 0 2375 254 66 30 chr3 194455297 194456161 -33068417 - L2 LINE L2 -189 3124 2229 891 229 57 92 chr3 194456161 194456723 -33067855 + MER34 LTR ERV1 1 542 0 2375 254 66 30 chr3 194456723 194456773 -33067805 - L2 LINE L2 -1084 2229 2182 289 311 45 15 chr3 194456787 194456919 -33067659 + L2 LINE L2 2018 2153 -1161 24 0 0 0 chr3 194457610 194457634 -33066944 + AT_rich Low_complexity Low_complexity 1 24 0 1019 157 6 12 chr3 194457725 194457891 -33066687 + FRAM SINE Alu 1 158 -18 332 313 100 80 chr3 194458726 194459077 -33065501 + L2 LINE L2 2915 3272 0 781 181 87 13 chr3 194459534 194459683 -33064895 + FRAM SINE Alu 3 162 -14 24 0 0 0 chr3 194460720 194460744 -33063834 + AT_rich Low_complexity Low_complexity 1 24 0 3205 194 42 14 chr3 194460756 194461536 -33063042 - L1MC4a LINE L1 -6 7802 7001 539 167 20 0 chr3 194462381 194462483 -33062095 + MSTD LTR MaLR 242 345 -51 376 179 12 48 chr3 194462564 194462648 -33061930 + MER93b LTR ERV1 1 81 -292 590 269 111 39 chr3 194462664 194462998 -33061580 + L1MC4a LINE L1 5524 5881 -1927 28 29 0 0 chr3 194463157 194463192 -33061386 + AT_rich Low_complexity Low_complexity 1 35 0 308 94 19 0 chr3 194464258 194464311 -33060267 + (CA)n Simple_repeat Simple_repeat 2 55 0 253 333 43 0 chr3 194464344 194464437 -33060141 - MIR3 SINE MIR -11 197 101 2461 46 0 16 chr3 194464973 194465276 -33059302 + AluY SINE Alu 2 299 -12 21 0 0 0 chr3 194465277 194465298 -33059280 + AT_rich Low_complexity Low_complexity 1 21 0 554 204 0 0 chr3 194465308 194465411 -33059167 + MLT1A1 LTR MaLR 1 103 -262 323 244 24 0 chr3 194465419 194465501 -33059077 + MLT1K LTR MaLR 469 552 -36 1262 238 113 24 chr3 194465512 194465965 -33058613 - LTR33 LTR ERVL -7 514 22 1641 184 75 0 chr3 194466002 194466323 -33058255 - MER7A DNA MER2_type -3 343 1 2573 14 0 3 chr3 194466550 194466838 -33057740 + AluYb8 SINE Alu 32 318 0 735 261 94 87 chr3 194466879 194467305 -33057273 + MLT1K LTR MaLR 160 588 0 21 89 0 0 chr3 194467457 194467513 -33057065 + AT_rich Low_complexity Low_complexity 1 56 0 2478 65 3 3 chr3 194467523 194467832 -33056746 + AluY SINE Alu 1 309 -2 1705 144 30 34 chr3 194468501 194468799 -33055779 + AluJb SINE Alu 1 297 -15 342 0 0 0 chr3 194471088 194471126 -33053452 + (CA)n Simple_repeat Simple_repeat 2 39 0 411 276 86 0 chr3 194471165 194471281 -33053297 + L2 LINE L2 3147 3272 0 2203 129 0 0 chr3 194473234 194473544 -33051034 - AluSx SINE Alu -2 310 1 706 190 0 0 chr3 194474202 194474318 -33050260 + Tigger1 DNA MER2_type 24 139 -2279 * 976 138 169 11 chr3 194474314 194474503 -33050075 + Tigger1 DNA MER2_type 2200 2418 0 269 86 0 0 chr3 194474731 194474766 -33049812 + AluSc SINE Alu 255 289 -10 1325 87 0 0 chr3 194475192 194475353 -33049225 - AluSg/x SINE Alu -15 295 135 575 226 19 85 chr3 194475418 194475630 -33048948 - L1MC5 LINE L1 -15 7946 7749 1789 231 19 50 chr3 194475633 194476097 -33048481 + LTR40c LTR ERVL 4 453 -12 611 175 97 35 chr3 194476098 194476326 -33048252 - L1MC5 LINE L1 -196 7765 7524 411 177 155 12 chr3 194476337 194476452 -33048126 - L1MB4 LINE L1 -4 6167 6045 1246 204 42 47 chr3 194476475 194476882 -33047696 - L1MC5 LINE L1 -447 7514 7110 257 130 174 0 chr3 194476881 194476927 -33047651 - L1MB4 LINE L1 -1997 5811 5758 * 987 200 44 88 chr3 194478043 194478525 -33046053 - MLT1F1 LTR MaLR 0 567 10 2273 96 0 13 chr3 194478941 194479242 -33045336 - AluSg SINE Alu -13 297 1 943 246 30 80 chr3 194480201 194480454 -33044124 - L2 LINE L2 -440 2874 2641 4925 46 18 0 chr3 194480454 194481024 -33043554 + L1PA10 LINE L1 5585 6164 -4 943 246 30 80 chr3 194481024 194481107 -33043471 - L2 LINE L2 -673 2641 2555 1176 167 44 65 chr3 194481107 194481401 -33043177 - MER63 DNA MER1_type -1 1061 774 572 209 78 8 chr3 194481489 194481618 -33042960 - MER63 DNA MER1_type -68 768 5 266 237 124 41 chr3 194482198 194482295 -33042283 + L2 LINE L2 3168 3272 0 743 353 130 22 chr3 194482554 194482754 -33041824 + L2 LINE L2 1182 1359 -1955 281 47 23 0 chr3 194482754 194482797 -33041781 + (CAAAA)n Simple_repeat Simple_repeat 2 45 0 743 353 130 22 chr3 194482797 194483567 -33041011 + L2 LINE L2 1359 2257 -1057 1950 157 18 9 chr3 194483610 194483941 -33040637 - L1M1 LINE L1 -7221 344 11 456 301 165 37 chr3 194483954 194484565 -33040013 + L2 LINE L2 2554 3234 -38 911 182 39 0 chr3 194486663 194486817 -33037761 + AluJb SINE Alu 1 160 -152 2394 93 0 3 chr3 194487402 194487713 -33036865 + AluSg SINE Alu 1 310 0 760 279 5 16 chr3 194488571 194488761 -33035817 - MIR SINE MIR -74 188 1 22 0 0 0 chr3 194488787 194488809 -33035769 + AT_rich Low_complexity Low_complexity 1 22 0 507 287 30 42 chr3 194489388 194489555 -33035023 + LTR67 LTR ERVL 8 172 -385 21 0 0 0 chr3 194490264 194490285 -33034293 + AT_rich Low_complexity Low_complexity 1 21 0 2568 48 0 3 chr3 194490688 194491000 -33033578 + AluY SINE Alu 1 311 0 2143 114 0 7 chr3 194492540 194492838 -33031740 - AluSg1 SINE Alu -13 296 1 472 47 16 0 chr3 194492914 194492978 -33031600 - MER41A LTR ERV1 -88 466 402 766 104 7 30 chr3 194493550 194493685 -33030893 - L1MA7 LINE L1 -28 6263 6132 2362 94 0 0 chr3 194493688 194493976 -33030602 - AluSg SINE Alu -22 288 1 236 355 0 0 chr3 194494087 194494163 -33030415 + MIR3 SINE MIR 126 201 -7 1895 131 0 0 chr3 194494562 194494821 -33029757 - AluSg SINE Alu -51 259 1 2297 244 55 123 chr3 194495241 194495450 -33029128 + L2 LINE L2 1810 2032 -1282 357 111 4 143 chr3 194495450 194495484 -33029094 + L1MA8 LINE L1 6134 6171 -120 2182 121 3 0 chr3 194495484 194495789 -33028789 + AluSq SINE Alu 1 306 -7 357 111 4 143 chr3 194495789 194495848 -33028730 + L1MA8 LINE L1 6171 6218 -73 2297 244 55 123 chr3 194495848 194496659 -33027919 + L2 LINE L2 2032 2847 -467 307 336 91 0 chr3 194496713 194496823 -33027755 - MIR SINE MIR -116 146 27 1430 187 57 101 chr3 194497717 194498082 -33026496 + MLT1B LTR MaLR 1 348 -42 2300 97 7 3 chr3 194498082 194498390 -33026188 - AluSp SINE Alu -4 309 1 1430 187 57 101 chr3 194498390 194498431 -33026147 + MLT1B LTR MaLR 348 389 -1 284 211 18 0 chr3 194498441 194498498 -33026080 + L2 LINE L2 3252 3309 -4 2274 100 10 0 chr3 194499109 194499418 -33025160 - AluSq SINE Alu -1 312 1 2321 96 36 30 chr3 194499843 194500045 -33024533 + L1MA3 LINE L1 5941 6140 -165 2206 115 0 0 chr3 194500045 194500340 -33024238 + AluSx SINE Alu 1 295 -17 2315 84 0 0 chr3 194500342 194500687 -33023891 + AluY SINE Alu 1 345 0 2321 96 36 30 chr3 194500687 194500843 -33023735 + L1MA3 LINE L1 6140 6305 0 2070 134 0 7 chr3 194501614 194501919 -33022659 - AluSx SINE Alu -9 303 1 1457 150 12 0 chr3 194501919 194502159 -33022419 - L1MB1 LINE L1 -100 6089 5847 1202 143 13 46 chr3 194502159 194502394 -33022184 + L1MA10 LINE L1 6104 6332 -2 2469 76 23 0 chr3 194502405 194502709 -33021869 + AluSx SINE Alu 1 311 -1 1120 251 90 39 chr3 194502886 194503273 -33021305 - LTR16C LTR ERVL 0 491 85 1699 155 30 7 chr3 194503998 194504295 -33020283 - L1MC1 LINE L1 -1 6332 6029 21 36 0 0 chr3 194506063 194506091 -33018487 + AT_rich Low_complexity Low_complexity 1 28 0 468 269 25 0 chr3 194507391 194507510 -33017068 + MIR SINE MIR 13 134 -128 245 29 29 0 chr3 194507671 194507705 -33016873 + (TTG)n Simple_repeat Simple_repeat 2 36 0 1743 163 3 23 chr3 194507818 194508125 -33016453 - AluJb SINE Alu -11 301 1 2424 71 0 34 chr3 194508294 194508616 -33015962 - AluY SINE Alu 0 311 1 21 36 0 0 chr3 194511554 194511582 -33012996 + AT_rich Low_complexity Low_complexity 1 28 0 2321 109 0 0 chr3 194512767 194513079 -33011499 - AluSx SINE Alu 0 312 1 4791 156 10 44 chr3 194513082 194513975 -33010603 - L1MB2 LINE L1 -1 6170 5308 601 175 0 26 chr3 194515380 194515494 -33009084 - L1MB2 LINE L1 -830 5316 5206 1039 188 53 0 chr3 194515503 194515711 -33008867 + AluJb SINE Alu 87 305 -7 1398 269 34 55 chr3 194516004 194516249 -33008329 - L1MEc LINE L1 -4602 1794 1545 1563 202 0 36 chr3 194516249 194516556 -33008022 + AluJb SINE Alu 14 309 -3 1398 269 34 55 chr3 194516556 194516940 -33007638 - L1MEc LINE L1 -4851 1545 1177 2246 118 3 0 chr3 194516940 194517246 -33007332 + AluSp SINE Alu 1 307 -6 1398 269 34 55 chr3 194517246 194517284 -33007294 - L1MEc LINE L1 -5219 1177 1140 813 281 82 0 chr3 194517420 194517651 -33006927 + MIR SINE MIR 12 261 -1 279 365 10 10 chr3 194517682 194517786 -33006792 + MER5A DNA MER1_type 86 189 0 537 286 127 5 chr3 194518249 194518438 -33006140 - MIR SINE MIR -48 214 3 214 297 103 36 chr3 194518645 194518810 -33005768 + L2 LINE L2 2886 3061 -211 238 224 104 0 chr3 194519011 194519078 -33005500 - L2 LINE L2 0 3313 3240 2074 103 0 0 chr3 194519294 194519567 -33005011 + AluY SINE Alu 39 311 0 235 338 54 14 chr3 194519573 194519721 -33004857 + MER20B DNA MER1_type 47 200 -583 3216 196 36 58 chr3 194519830 194520765 -33003813 + L1MB7 LINE L1 4367 5275 -909 1578 199 33 13 chr3 194520765 194521067 -33003511 + AluJo SINE Alu 1 308 -4 3216 196 36 58 chr3 194521067 194521318 -33003260 + L1MB7 LINE L1 5275 5530 -654 1105 169 0 0 chr3 194521318 194521490 -33003088 + AluJo SINE Alu 3 174 -138 1108 200 36 0 chr3 194521494 194521714 -33002864 + L1MB7 LINE L1 5930 6157 -27 800 97 0 136 chr3 194521729 194521884 -33002694 - AluSq SINE Alu -29 284 151 820 174 8 0 chr3 194521984 194522116 -33002462 - FLAM_C SINE Alu -10 133 1 2689 42 0 0 chr3 194522381 194522692 -33001886 - AluY SINE Alu 0 311 1 338 298 54 99 chr3 194523781 194524134 -33000444 - L1M2 LINE L1 -5614 1235 899 2312 41 4 0 chr3 194525054 194525322 -32999256 - L1PA4 LINE L1 0 6155 5887 2214 129 0 0 chr3 194525650 194525961 -32998617 - AluSx SINE Alu -1 311 1 266 207 0 52 chr3 194526710 194526768 -32997810 - FLAM SINE Alu -1 132 78 1710 84 0 5 chr3 194526768 194526981 -32997597 - AluSp SINE Alu -101 212 1 682 117 0 0 chr3 194527070 194527164 -32997414 + U6 snRNA snRNA 1 94 -13 1067 150 0 6 chr3 194527164 194527344 -32997234 + L1MA5 LINE L1 6122 6300 0 2420 58 3 58 chr3 194527639 194527965 -32996613 + AluY SINE Alu 1 308 -3 31 36 0 18 chr3 194528132 194528156 -32996422 + AT_rich Low_complexity Low_complexity 1 24 -31 2277 92 0 0 chr3 194528156 194528439 -32996139 + AluSg SINE Alu 1 283 -27 31 36 0 18 chr3 194528439 194528470 -32996108 + AT_rich Low_complexity Low_complexity 24 55 0 247 315 131 50 chr3 194528629 194529086 -32995492 + L1MEd LINE L1 68 561 -5558 347 137 26 145 chr3 194529123 194529240 -32995338 + L1MD3 LINE L1 7893 7995 0 23 54 0 0 chr3 194529297 194529334 -32995244 + AT_rich Low_complexity Low_complexity 1 37 0 2128 87 0 53 chr3 194529377 194529711 -32994867 - AluY SINE Alu 0 318 1 359 335 152 31 chr3 194529807 194529885 -32994693 + L2 LINE L2 2061 2128 -1186 2030 152 0 3 chr3 194529885 194530187 -32994391 - AluJb SINE Alu -11 301 1 359 335 152 31 chr3 194530187 194530648 -32993930 + L2 LINE L2 2128 2665 -649 2628 40 0 0 chr3 194530707 194531007 -32993571 + AluY SINE Alu 1 300 -11 1938 145 3 13 chr3 194532664 194532968 -32991610 + AluSx SINE Alu 1 301 -11 2544 80 3 0 chr3 194533265 194533576 -32991002 + AluSp SINE Alu 1 312 -1 2349 99 0 3 chr3 194534652 194534964 -32989614 - AluY SINE Alu 0 311 1 236 30 30 0 chr3 194535199 194535232 -32989346 + (GA)n Simple_repeat Simple_repeat 2 35 0 1685 169 3 29 chr3 194535323 194535630 -32988948 + AluJo SINE Alu 1 299 -13 1802 130 44 34 chr3 194535810 194536103 -32988475 + AluSx SINE Alu 1 296 -16 1817 151 310 49 chr3 194536127 194536676 -32987902 - L1MB7 LINE L1 -5 6179 5488 324 317 82 64 chr3 194537265 194537444 -32987134 + L1MC/D LINE L1 5319 5493 -2315 2232 105 17 0 chr3 194537444 194537738 -32986840 + AluSq SINE Alu 1 299 -14 324 317 82 64 chr3 194537738 194537750 -32986828 + L1MC/D LINE L1 5493 5503 -2305 2400 74 3 0 chr3 194537750 194538049 -32986529 + AluY SINE Alu 1 300 -11 324 317 82 64 chr3 194538049 194538137 -32986441 + L1MC/D LINE L1 5503 5604 -2204 1170 154 43 30 chr3 194538144 194538165 -32986413 - AluJb SINE Alu 0 312 293 1615 116 39 0 chr3 194538165 194538423 -32986155 - L1MA3 LINE L1 -2 6303 6036 1170 154 43 30 chr3 194538423 194538634 -32985944 - AluJb SINE Alu -19 293 77 12748 155 28 41 chr3 194538634 194539327 -32985251 - L1MA3 LINE L1 -224 6081 5380 2409 82 0 0 chr3 194539327 194539621 -32984957 + AluY SINE Alu 1 294 -17 12748 155 28 41 chr3 194539621 194539632 -32984946 - L1MA3 LINE L1 -925 5380 5370 2223 113 3 0 chr3 194539632 194539933 -32984645 + AluSx SINE Alu 1 302 -10 12748 155 28 41 chr3 194539933 194540870 -32983708 - L1MA3 LINE L1 -935 5370 4422 2416 86 3 0 chr3 194540870 194541172 -32983406 - AluSp SINE Alu -10 303 1 12748 155 28 41 chr3 194541172 194542855 -32981723 - L1MA3 LINE L1 -1883 4422 2777 415 295 90 17 chr3 194543026 194543260 -32981318 - L2 LINE L2 -1262 2052 1802 2282 103 3 0 chr3 194543475 194543776 -32980802 - AluSq SINE Alu -11 302 1 1837 144 42 0 chr3 194544125 194544410 -32980168 - AluSx SINE Alu -15 297 1 1239 120 0 0 chr3 194544810 194544977 -32979601 + AluSp SINE Alu 135 301 -12 944 188 17 6 chr3 194545031 194545212 -32979366 + AluJb SINE Alu 127 309 -3 2198 99 11 0 chr3 194545341 194545625 -32978953 + AluSq SINE Alu 1 287 -26 22 35 0 0 chr3 194545625 194545654 -32978924 + AT_rich Low_complexity Low_complexity 1 29 0 1974 121 39 0 chr3 194546287 194546567 -32978011 - AluSx SINE Alu -21 291 1 230 224 96 72 chr3 194546619 194546744 -32977834 - MIR SINE MIR -128 134 7 1636 176 0 32 chr3 194546766 194547079 -32977499 - AluJb SINE Alu -9 303 1 26 0 0 0 chr3 194547264 194547290 -32977288 + AT_rich Low_complexity Low_complexity 1 26 0 2128 125 3 0 chr3 194547301 194547598 -32976980 - AluSq SINE Alu -15 298 1 1786 160 19 13 chr3 194548286 194548593 -32975985 - AluSx SINE Alu -3 309 1 234 91 0 0 chr3 194548632 194548665 -32975913 + (T)n Simple_repeat Simple_repeat 1 33 0 2307 52 21 0 chr3 194548703 194548991 -32975587 + AluY SINE Alu 1 294 -17 1653 168 28 14 chr3 194549336 194549627 -32974951 + AluJo SINE Alu 10 304 -8 371 225 36 51 chr3 194549804 194549942 -32974636 - L1MC4 LINE L1 -5 8037 7902 2036 140 3 0 chr3 194550086 194550386 -32974192 - AluSx SINE Alu -11 301 1 247 307 79 43 chr3 194550512 194550652 -32973926 - MER5B DNA MER1_type 0 178 34 * 760 206 39 22 chr3 194550639 194550711 -32973867 + MER5A DNA MER1_type 5 74 -115 2270 118 0 10 chr3 194550711 194551017 -32973561 + AluSx SINE Alu 1 303 -9 760 206 39 22 chr3 194551017 194551124 -32973454 + MER5A DNA MER1_type 74 187 -2 1978 93 35 52 chr3 194551418 194551728 -32972850 - AluY SINE Alu -6 305 1 1311 255 64 86 chr3 194552018 194552518 -32972060 + L1MC4 LINE L1 7207 7683 -359 2087 137 0 0 chr3 194552518 194552810 -32971768 + AluSx SINE Alu 1 292 -20 1311 255 64 86 chr3 194552810 194553163 -32971415 + L1MC4 LINE L1 7683 8042 0 2281 109 3 0 chr3 194553199 194553503 -32971075 + AluSx SINE Alu 1 305 -7 301 182 182 73 chr3 194553921 194554006 -32970572 - MER94 DNA DNA 0 134 33 2064 141 3 0 chr3 194554006 194554304 -32970274 + AluSx SINE Alu 1 299 -13 301 182 182 73 chr3 194554304 194554328 -32970250 - MER94 DNA DNA -101 33 13 23 33 0 0 chr3 194554403 194554433 -32970145 + AT_rich Low_complexity Low_complexity 1 30 0 1000 229 40 9 chr3 194554473 194554700 -32969878 - MIR SINE MIR 0 262 29 190 56 56 0 chr3 194554702 194554738 -32969840 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1902 146 0 0 chr3 194554741 194555022 -32969556 - AluSx SINE Alu -31 281 1 1465 158 72 24 chr3 194555187 194555478 -32969100 + AluJb SINE Alu 1 305 -7 2381 108 0 3 chr3 194555482 194555796 -32968782 + AluSp SINE Alu 1 313 0 204 40 0 0 chr3 194556095 194556120 -32968458 + (TTTTTG)n Simple_repeat Simple_repeat 5 29 0 198 0 0 0 chr3 194556384 194556406 -32968172 + (T)n Simple_repeat Simple_repeat 1 22 0 22 0 0 0 chr3 194556793 194556815 -32967763 + AT_rich Low_complexity Low_complexity 1 22 0 351 229 112 39 chr3 194556815 194556994 -32967584 - L1ME4a LINE L1 0 6121 5930 * 1442 204 136 72 chr3 194556963 194557631 -32966947 - L1MC5 LINE L1 -7 7954 7244 2224 120 0 3 chr3 194557644 194557944 -32966634 - AluSx SINE Alu -13 299 1 273 208 19 0 chr3 194558039 194558092 -32966486 + MER66A LTR ERV1 284 337 -141 2314 117 0 0 chr3 194559342 194559649 -32964929 + AluSx SINE Alu 1 307 -5 932 127 0 22 chr3 194559659 194559793 -32964785 + FLAM_C SINE Alu 1 131 -2 2224 116 0 7 chr3 194559942 194560243 -32964335 - AluSx SINE Alu -13 299 1 21 0 0 0 chr3 194560997 194561018 -32963560 + AT_rich Low_complexity Low_complexity 1 21 0 1887 169 0 16 chr3 194561741 194562048 -32962530 - AluJo SINE Alu -10 302 1 305 259 86 22 chr3 194562048 194562187 -32962391 - L1MC5 LINE L1 -49 7912 7765 803 199 99 0 chr3 194562264 194562415 -32962163 - AluJb SINE Alu -3 309 144 1640 169 65 30 chr3 194562431 194562768 -32961810 + L1P4 LINE L1 4975 5333 -833 1821 156 10 36 chr3 194562768 194563075 -32961503 + AluSx SINE Alu 1 299 -13 1640 169 65 30 chr3 194563075 194563234 -32961344 + L1P4 LINE L1 5333 5485 -681 1825 136 42 0 chr3 194563237 194563523 -32961055 + AluY SINE Alu 5 302 -9 548 318 26 11 chr3 194563681 194563945 -32960633 - L1MEc LINE L1 -4581 1815 1548 254 150 0 0 chr3 194564145 194564185 -32960393 - MSTB LTR MaLR 0 432 393 1731 157 27 14 chr3 194564186 194564479 -32960099 + AluJo SINE Alu 1 297 -15 1437 158 251 22 chr3 194564490 194564813 -32959765 - MSTB LTR MaLR -25 401 5 195 42 0 0 chr3 194564832 194564856 -32959722 + (TTA)n Simple_repeat Simple_repeat 2 25 0 1579 177 3 14 chr3 194564856 194565139 -32959439 - AluJb SINE Alu -32 280 1 2292 100 0 7 chr3 194566258 194566558 -32958020 - AluSq SINE Alu -15 298 1 222 221 13 39 chr3 194567921 194567998 -32956580 + (CATATA)n Simple_repeat Simple_repeat 2 76 0 2433 81 0 0 chr3 194568223 194568521 -32956057 + AluSx SINE Alu 1 298 -14 2441 71 0 3 chr3 194568633 194568929 -32955649 + AluSc SINE Alu 1 295 -14 23 0 0 0 chr3 194570794 194570817 -32953761 + AT_rich Low_complexity Low_complexity 1 23 0 2506 72 0 0 chr3 194570880 194571184 -32953394 - AluY SINE Alu -7 304 1 1183 132 6 0 chr3 194571555 194571729 -32952849 - AluSg/x SINE Alu -17 295 121 2563 68 0 13 chr3 194571722 194572032 -32952546 - AluSq SINE Alu -7 306 1 351 324 87 46 chr3 194572214 194572560 -32952018 + L1ME LINE L1 5354 5713 -408 417 148 0 37 chr3 194572606 194572687 -32951891 - FLAM_C SINE Alu 0 143 66 233 221 15 0 chr3 194572855 194572868 -32951710 + (TA)n Simple_repeat Simple_repeat 1 12 -57 1620 156 49 4 chr3 194572868 194573131 -32951447 + AluJb SINE Alu 11 285 -27 233 221 15 0 chr3 194573131 194573185 -32951393 + (TA)n Simple_repeat Simple_repeat 12 69 0 22 56 0 0 chr3 194573356 194573392 -32951186 + AT_rich Low_complexity Low_complexity 1 36 0 2141 127 13 7 chr3 194573434 194573741 -32950837 + AluSx SINE Alu 1 309 -3 2473 54 3 3 chr3 194573770 194574064 -32950514 + AluY SINE Alu 1 294 -17 2012 122 0 27 chr3 194574272 194574566 -32950012 + AluSx SINE Alu 1 286 -26 24 0 0 0 chr3 194574573 194574597 -32949981 + AT_rich Low_complexity Low_complexity 1 24 0 2103 120 3 13 chr3 194575298 194575436 -32949142 + AluSx SINE Alu 1 139 -173 2304 98 7 0 chr3 194575436 194575732 -32948846 + AluSx SINE Alu 1 298 -14 2103 120 3 13 chr3 194575732 194575892 -32948686 + AluSx SINE Alu 139 296 -16 309 281 115 0 chr3 194576098 194576237 -32948341 - L1M4 LINE L1 -3316 2830 2676 255 219 31 0 chr3 194576290 194576354 -32948224 + (TA)n Simple_repeat Simple_repeat 2 67 0 263 324 14 0 chr3 194576449 194576588 -32947990 - L1M4 LINE L1 -3603 2543 2403 2166 106 14 3 chr3 194576661 194576953 -32947625 + AluSp SINE Alu 1 295 -18 26 74 0 0 chr3 194577064 194577118 -32947460 + AT_rich Low_complexity Low_complexity 1 54 0 2164 116 7 0 chr3 194577220 194577504 -32947074 + AluSx SINE Alu 2 287 -25 751 183 14 0 chr3 194577982 194578124 -32946454 - MIR SINE MIR -33 229 86 998 52 0 0 chr3 194578415 194578530 -32946048 + AluY SINE Alu 183 297 -14 2507 70 0 0 chr3 194578565 194578863 -32945715 + AluY SINE Alu 1 298 -13 22 0 0 0 chr3 194578977 194578999 -32945579 + AT_rich Low_complexity Low_complexity 1 22 0 1951 125 0 86 chr3 194579450 194579787 -32944791 - AluSx SINE Alu -4 308 1 806 272 32 18 chr3 194580174 194580436 -32944142 + L1ME LINE L1 5327 5590 -572 517 178 47 0 chr3 194580446 194580553 -32944025 - MIR SINE MIR -44 218 107 2167 116 7 7 chr3 194580735 194581037 -32943541 + AluSq SINE Alu 3 304 -9 1825 138 3 61 chr3 194581047 194581193 -32943385 + AluJb SINE Alu 2 155 -157 2145 120 3 26 chr3 194581193 194581501 -32943077 + AluSx SINE Alu 2 302 -10 1825 138 3 61 chr3 194581501 194581680 -32942898 + AluJb SINE Alu 155 308 -4 1146 99 0 6 chr3 194582171 194582332 -32942246 + L1PB1 LINE L1 5992 6151 0 2137 132 0 0 chr3 194582870 194583165 -32941413 + AluSx SINE Alu 1 295 -17 355 285 59 54 chr3 194583189 194583375 -32941203 - L1MC4a LINE L1 -1928 5880 5694 2204 108 10 0 chr3 194583375 194583680 -32940898 - AluSx SINE Alu -4 308 1 700 155 8 23 chr3 194583683 194583812 -32940766 - FLAM_C SINE Alu -5 138 12 260 119 136 0 chr3 194583823 194583882 -32940696 + L1MA8 LINE L1 6221 6287 -4 539 246 264 0 chr3 194584375 194584655 -32939923 + L2 LINE L2 2947 3300 -13 1727 164 13 59 chr3 194584655 194584960 -32939618 + AluJb SINE Alu 1 291 -21 1232 60 13 0 chr3 194585430 194585581 -32938997 - AluSc SINE Alu -103 206 54 570 150 39 31 chr3 194585581 194585708 -32938870 - MER41A-int LTR ERV1 -5818 128 1 4007 84 11 39 chr3 194585813 194585950 -32938628 - MER41A LTR ERV1 0 554 415 2302 102 0 0 chr3 194585950 194586245 -32938333 + AluSx SINE Alu 2 296 -16 4007 84 11 39 chr3 194586245 194586677 -32937901 - MER41A LTR ERV1 -139 415 1 639 206 24 77 chr3 194586677 194586847 -32937731 + MER21B LTR ERV1 681 841 -22 230 0 33 0 chr3 194586850 194586880 -32937698 + (TTTTG)n Simple_repeat Simple_repeat 2 32 0 2066 143 0 3 chr3 194587162 194587470 -32937108 + AluSx SINE Alu 2 308 -4 1392 140 83 64 chr3 194589893 194590207 -32934371 + MER33 DNA MER1_type 1 320 -4 337 214 29 58 chr3 194590342 194590366 -32934212 - Charlie7 DNA MER1_type -2511 101 78 859 188 0 0 chr3 194590366 194590531 -32934047 + FRAM SINE Alu 1 165 -1 337 214 29 58 chr3 194590531 194590609 -32933969 - Charlie7 DNA MER1_type -2534 78 2 2023 103 3 69 chr3 194591523 194591842 -32932736 - AluSq SINE Alu -15 298 1 865 238 113 70 chr3 194591885 194592100 -32932478 - HAL1 LINE L1 -240 2267 2063 2125 147 0 3 chr3 194592100 194592413 -32932165 - AluSx SINE Alu 0 312 1 865 238 113 70 chr3 194592413 194592639 -32931939 - HAL1 LINE L1 -444 2063 1807 7606 161 97 45 chr3 194593117 194594731 -32929847 + pTR5 LTR ERV1 741 2438 0 643 233 100 9 chr3 194594749 194594959 -32929619 + L1MC5 LINE L1 7006 7234 -727 462 198 91 136 chr3 194595082 194595297 -32929281 + L1MC5 LINE L1 7263 7451 -510 2072 146 0 0 chr3 194595297 194595592 -32928986 - AluSx SINE Alu -16 296 2 462 198 91 136 chr3 194595592 194595795 -32928783 + L1MC5 LINE L1 7451 7662 -299 2162 113 10 3 chr3 194595819 194596121 -32928457 + AluSc SINE Alu 1 304 -5 2286 107 0 0 chr3 194596552 194596850 -32927728 + AluSg1 SINE Alu 1 298 -11 2219 122 0 0 chr3 194597397 194597692 -32926886 + AluSx SINE Alu 1 295 -17 7006 45 13 0 chr3 194597712 194599042 -32925536 - L1PA6 LINE L1 -2 6152 4858 188 344 68 6 chr3 194599223 194599336 -32925242 - L2 LINE L2 -12 3301 3174 1886 97 0 0 chr3 194599336 194599574 -32925004 + AluSq SINE Alu 61 298 -15 188 344 68 6 chr3 194599574 194599623 -32924955 - L2 LINE L2 -139 3174 3129 1777 185 3 3 chr3 194599648 194599950 -32924628 + AluJb SINE Alu 1 302 -10 2116 137 0 0 chr3 194599956 194600262 -32924316 + AluSx SINE Alu 1 306 -6 3032 78 10 29 chr3 194600263 194600521 -32924057 - MER41A LTR ERV1 -127 427 178 2066 136 0 10 chr3 194600521 194600830 -32923748 - AluSx SINE Alu -6 306 1 3032 78 10 29 chr3 194600830 194600984 -32923594 - MER41A LTR ERV1 -376 178 23 2205 118 0 0 chr3 194600985 194601281 -32923297 + AluY SINE Alu 3 298 -13 1226 155 24 10 chr3 194601282 194601313 -32923265 - HERVK14 LTR ERVK -154 5791 5758 2830 108 39 30 chr3 194601313 194601629 -32922949 - MER41A-int LTR ERV1 -1 5945 5622 2133 136 7 0 chr3 194601629 194601930 -32922648 + AluSp SINE Alu 1 303 -10 2830 108 39 30 chr3 194601930 194602077 -32922501 - MER41A-int LTR ERV1 -324 5622 5478 1537 159 69 22 chr3 194603069 194603346 -32921232 + AluJo SINE Alu 1 290 -22 22 70 0 0 chr3 194603346 194603389 -32921189 + AT_rich Low_complexity Low_complexity 1 43 0 1275 178 49 8 chr3 194603411 194603658 -32920920 - AluJo SINE Alu -16 296 40 2088 76 65 4 chr3 194603790 194604066 -32920512 + AluSq SINE Alu 1 293 -20 2174 103 7 3 chr3 194604070 194604372 -32920206 + AluY SINE Alu 5 307 -4 613 167 92 17 chr3 194604532 194604652 -32919926 - FLAM_C SINE Alu 0 133 5 1512 142 109 8 chr3 194605076 194605343 -32919235 + AluJb SINE Alu 1 294 -18 2373 99 3 3 chr3 194606460 194606772 -32917806 - AluSx SINE Alu 0 312 1 24 53 0 0 chr3 194606907 194606945 -32917633 + AT_rich Low_complexity Low_complexity 1 38 0 2168 125 3 0 chr3 194607402 194607705 -32916873 + AluSx SINE Alu 1 304 -8 2292 76 20 20 chr3 194608022 194608326 -32916252 - AluY SINE Alu -7 304 1 706 148 35 0 chr3 194608546 194608661 -32915917 - AluSq/x SINE Alu -193 120 2 1898 117 4 0 chr3 194608918 194609174 -32915404 + AluSp SINE Alu 1 257 -56 216 0 0 0 chr3 194609177 194609201 -32915377 + (TAA)n Simple_repeat Simple_repeat 2 25 0 2171 101 7 16 chr3 194609276 194609582 -32914996 + AluSx SINE Alu 1 303 -9 1994 87 76 0 chr3 194609600 194609902 -32914676 + AluSx SINE Alu 1 322 0 212 253 187 11 chr3 194610134 194610225 -32914353 + MER5A DNA MER1_type 81 187 -2 2141 123 0 46 chr3 194610382 194610706 -32913872 + AluSx SINE Alu 1 309 -3 379 298 152 39 chr3 194611733 194611934 -32912644 + L2 LINE L2 2911 3088 -225 414 0 0 0 chr3 194611934 194611980 -32912598 + (TG)n Simple_repeat Simple_repeat 2 47 0 379 298 152 39 chr3 194611980 194612140 -32912438 + L2 LINE L2 3088 3313 0 1975 100 4 8 chr3 194612335 194612594 -32911984 - AluSx SINE Alu -21 291 34 3650 97 49 20 chr3 194612604 194613160 -32911418 - MER41-int LTR ERV1 -224 5722 5151 2068 132 4 0 chr3 194613160 194613472 -32911106 - AluSx SINE Alu 0 313 1 10762 128 65 26 chr3 194613473 194615281 -32909297 - MER41-int LTR ERV1 -3120 3143 1475 219 114 0 0 chr3 194615281 194615316 -32909262 + (TTTA)n Simple_repeat Simple_repeat 3 37 0 10762 128 65 26 chr3 194615316 194615492 -32909086 - MER41-int LTR ERV1 -4788 1475 1307 345 122 0 122 chr3 194615484 194615530 -32909048 - MER41-int LTR ERV1 -5096 850 815 * 2228 93 3 7 chr3 194615530 194615832 -32908746 + AluSc SINE Alu 1 301 -8 345 122 0 122 chr3 194615832 194615859 -32908719 - MER41-int LTR ERV1 -5131 815 786 3282 85 5 13 chr3 194615997 194616444 -32908134 - MER41A LTR ERV1 -110 444 2 237 271 0 0 chr3 194616838 194616886 -32907692 + polypyrimidine Low_complexity Low_complexity 3 50 0 2277 90 31 0 chr3 194617042 194617332 -32907246 + AluSq SINE Alu 1 299 -14 22 80 0 0 chr3 194618090 194618140 -32906438 + AT_rich Low_complexity Low_complexity 1 50 0 2347 81 17 0 chr3 194618208 194618506 -32906072 + AluSp SINE Alu 1 303 -10 280 270 34 40 chr3 194619293 194619430 -32905148 - L1ME LINE L1 -374 5747 5610 2235 64 50 0 chr3 194619430 194619712 -32904866 - AluY SINE Alu -15 296 1 1310 166 5 5 chr3 194619731 194619954 -32904624 - AluJb SINE Alu 0 312 90 261 57 0 0 chr3 194619954 194619989 -32904589 + (GA)n Simple_repeat Simple_repeat 2 36 0 1947 129 10 14 chr3 194620319 194620613 -32903965 + AluSg SINE Alu 1 293 -17 291 353 41 8 chr3 194620627 194620749 -32903829 - MER5A DNA MER1_type -57 132 7 2348 107 0 7 chr3 194620803 194621112 -32903466 + AluSc SINE Alu 1 307 -2 2233 113 0 3 chr3 194621763 194622064 -32902514 + AluSp SINE Alu 1 300 -13 1889 127 53 3 chr3 194622494 194622778 -32901800 + AluSx SINE Alu 15 312 0 551 112 45 0 chr3 194622794 194622883 -32901695 + MER3 DNA MER1_type 117 209 0 596 107 0 0 chr3 194622943 194623018 -32901560 + AluSg/x SINE Alu 113 187 -123 1055 107 0 0 chr3 194623046 194623177 -32901401 - AluSq/x SINE Alu -182 131 1 420 272 66 96 chr3 194623177 194623585 -32900993 - MLT1K LTR MaLR -5 583 188 2181 125 3 0 chr3 194623822 194624117 -32900461 - AluSx SINE Alu -16 296 1 251 243 68 0 chr3 194624256 194624330 -32900248 + MIR SINE MIR 120 198 -64 186 43 0 0 chr3 194624378 194624401 -32900177 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1979 117 0 7 chr3 194624403 194624685 -32899893 - AluSc SINE Alu -29 280 1 3820 156 85 12 chr3 194624686 194625378 -32899200 + L1MA4 LINE L1 5335 6077 -223 1163 155 43 30 chr3 194625378 194625589 -32898989 + AluJb SINE Alu 77 293 -19 1626 112 39 0 chr3 194625589 194625847 -32898731 + L1MA3 LINE L1 6036 6303 -2 1163 155 43 30 chr3 194625847 194625867 -32898711 + AluJb SINE Alu 293 311 -1 324 317 82 64 chr3 194625874 194625962 -32898616 - L1MC/D LINE L1 -2204 5604 5519 2378 77 3 0 chr3 194625962 194626260 -32898318 - AluY SINE Alu -12 299 1 324 317 82 64 chr3 194626260 194626272 -32898306 - L1MC/D LINE L1 -2289 5519 5509 2248 102 17 0 chr3 194626272 194626566 -32898012 - AluSq SINE Alu -14 299 1 324 317 82 64 chr3 194626566 194626745 -32897833 - L1MC/D LINE L1 -2299 5509 5319 1811 151 309 51 chr3 194627334 194627884 -32896694 + L1MB7 LINE L1 5488 6179 -5 1792 130 45 34 chr3 194627908 194628200 -32896378 - AluSx SINE Alu -17 295 1 1685 169 3 29 chr3 194628380 194628687 -32895891 - AluJo SINE Alu -13 299 1 236 30 30 0 chr3 194628778 194628811 -32895767 + (TC)n Simple_repeat Simple_repeat 2 35 0 826 143 88 39 chr3 194629018 194629200 -32895378 + MIR SINE MIR 72 262 0 265 200 15 0 chr3 194629253 194629318 -32895260 - MER112 DNA MER1_type -85 175 110 184 339 85 25 chr3 194629443 194629561 -32895017 + MIR SINE MIR 27 151 -57 1016 205 0 0 chr3 194629986 194630142 -32894436 + FAM SINE Alu 1 156 -19 404 107 4 6 chr3 194630487 194630733 -32893845 + AluSx SINE Alu 1 299 -12 21 0 0 0 chr3 194631044 194631065 -32893513 + AT_rich Low_complexity Low_complexity 1 21 0 334 269 188 64 chr3 194633143 194633696 -32890882 - L1M2 LINE L1 -5539 1310 680 35 41 0 0 chr3 194633894 194633943 -32890635 + GC_rich Low_complexity Low_complexity 1 49 0 24 0 0 0 chr3 194634714 194634738 -32889840 + GC_rich Low_complexity Low_complexity 1 24 0 2289 85 26 7 chr3 194635721 194636027 -32888551 + AluSx SINE Alu 1 312 0 499 316 13 7 chr3 194637993 194638145 -32886433 - MIR SINE MIR -50 212 60 836 145 0 0 chr3 194638161 194638292 -32886286 - AluSg SINE Alu -179 131 1 26 30 0 0 chr3 194638592 194638625 -32885953 + AT_rich Low_complexity Low_complexity 1 33 0 2086 123 13 0 chr3 194638628 194638929 -32885649 + AluSx SINE Alu 2 306 -6 2060 112 22 0 chr3 194638957 194639233 -32885345 + AluSx SINE Alu 13 294 -18 200 270 27 27 chr3 194639436 194639510 -32885068 - MIR SINE MIR -17 245 172 2032 122 7 3 chr3 194639896 194640191 -32884387 - AluSq SINE Alu -17 296 1 2032 112 7 10 chr3 194640363 194640657 -32883921 - AluSx SINE Alu -17 295 3 1856 146 16 3 chr3 194640718 194641026 -32883552 - AluSq SINE Alu -1 312 1 1457 147 49 0 chr3 194641751 194641975 -32882603 + MER46A DNA MER2_type 1 235 -1 2356 89 7 0 chr3 194642158 194642460 -32882118 - AluSq SINE Alu -9 304 1 2151 139 20 21 chr3 194642656 194642990 -32881588 - MER41B-int LTR ERV1 -5390 556 127 1898 70 8 4 chr3 194642990 194643233 -32881345 - AluSc SINE Alu -12 297 54 2151 139 20 21 chr3 194643233 194643360 -32881218 - MER41B-int LTR ERV1 -5819 127 1 958 82 44 0 chr3 194643465 194643600 -32880978 - MER41B LTR ERV1 0 635 495 2258 84 11 0 chr3 194643601 194643885 -32880693 + AluSq SINE Alu 1 287 -26 22 35 0 0 chr3 194643885 194643914 -32880664 + AT_rich Low_complexity Low_complexity 1 29 0 1974 121 39 0 chr3 194644547 194644827 -32879751 - AluSx SINE Alu -21 291 1 230 224 96 72 chr3 194644879 194645004 -32879574 - MIR SINE MIR -128 134 7 1741 166 0 32 chr3 194645026 194645339 -32879239 - AluJb SINE Alu -9 303 1 26 0 0 0 chr3 194645524 194645550 -32879028 + AT_rich Low_complexity Low_complexity 1 26 0 2123 125 3 0 chr3 194645561 194645858 -32878720 - AluSq SINE Alu -15 298 1 1770 163 19 13 chr3 194646546 194646853 -32877725 - AluSx SINE Alu -3 309 1 234 91 0 0 chr3 194646892 194646925 -32877653 + (T)n Simple_repeat Simple_repeat 1 33 0 2583 37 3 0 chr3 194646963 194647258 -32877320 + AluY SINE Alu 1 296 -15 1653 168 28 14 chr3 194647603 194647894 -32876684 + AluJo SINE Alu 10 304 -8 371 225 36 51 chr3 194648071 194648209 -32876369 - L1MC4 LINE L1 -5 8037 7902 2036 140 3 0 chr3 194648353 194648653 -32875925 - AluSx SINE Alu -11 301 1 247 307 79 43 chr3 194648779 194648919 -32875659 - MER5B DNA MER1_type 0 178 34 * 750 212 39 17 chr3 194648906 194648978 -32875600 + MER5A DNA MER1_type 5 74 -115 2279 117 0 10 chr3 194648978 194649285 -32875293 + AluSx SINE Alu 1 304 -8 750 212 39 17 chr3 194649285 194649391 -32875187 + MER5A DNA MER1_type 74 187 -2 1978 93 35 52 chr3 194649685 194649995 -32874583 - AluY SINE Alu -6 305 1 1311 255 64 86 chr3 194650285 194650785 -32873793 + L1MC4 LINE L1 7207 7683 -359 2087 137 0 0 chr3 194650785 194651077 -32873501 + AluSx SINE Alu 1 292 -20 1311 255 64 86 chr3 194651077 194651430 -32873148 + L1MC4 LINE L1 7683 8042 0 2276 99 3 10 chr3 194651466 194651770 -32872808 + AluSx SINE Alu 1 302 -10 301 182 182 73 chr3 194652188 194652273 -32872305 - MER94 DNA DNA 0 134 33 2064 141 3 0 chr3 194652273 194652571 -32872007 + AluSx SINE Alu 1 299 -13 301 182 182 73 chr3 194652571 194652595 -32871983 - MER94 DNA DNA -101 33 13 23 33 0 0 chr3 194652670 194652700 -32871878 + AT_rich Low_complexity Low_complexity 1 30 0 1000 229 40 9 chr3 194652740 194652967 -32871611 - MIR SINE MIR 0 262 29 190 56 56 0 chr3 194652969 194653005 -32871573 + (TTTA)n Simple_repeat Simple_repeat 2 39 0 1902 146 0 0 chr3 194653008 194653289 -32871289 - AluSx SINE Alu -31 281 1 1465 158 72 24 chr3 194653454 194653745 -32870833 + AluJb SINE Alu 1 305 -7 2381 108 0 3 chr3 194653749 194654063 -32870515 + AluSp SINE Alu 1 313 0 204 40 0 0 chr3 194654362 194654387 -32870191 + (TTTTTG)n Simple_repeat Simple_repeat 5 29 0 180 0 0 0 chr3 194654651 194654671 -32869907 + (T)n Simple_repeat Simple_repeat 1 20 0 22 0 0 0 chr3 194655058 194655080 -32869498 + AT_rich Low_complexity Low_complexity 1 22 0 351 229 112 39 chr3 194655080 194655259 -32869319 - L1ME4a LINE L1 0 6121 5930 * 1442 204 136 72 chr3 194655228 194655896 -32868682 - L1MC5 LINE L1 -7 7954 7244 2201 120 0 7 chr3 194655909 194656210 -32868368 - AluSx SINE Alu -13 299 1 1210 161 9 9 chr3 194656560 194656783 -32867795 + AluSq SINE Alu 82 304 -9 1798 145 10 52 chr3 194656793 194656939 -32867639 + AluJb SINE Alu 2 130 -182 2121 120 3 26 chr3 194656939 194657247 -32867331 + AluSx SINE Alu 2 302 -10 1798 145 10 52 chr3 194657247 194657410 -32867168 + AluJb SINE Alu 130 298 -14 2070 126 10 13 chr3 194658998 194659307 -32865271 - AluSx SINE Alu -4 308 1 2350 94 10 7 chr3 194659417 194659724 -32864854 - AluSx SINE Alu -4 308 1 1357 182 51 47 chr3 194659794 194659954 -32864624 - AluJo SINE Alu -15 297 134 2236 112 0 3 chr3 194659954 194660257 -32864321 - AluSx SINE Alu -10 302 1 1357 182 51 47 chr3 194660257 194660392 -32864186 - AluJo SINE Alu -178 134 1 2095 110 3 3 chr3 194660760 194661078 -32863500 - AluSx SINE Alu 0 318 1 803 211 111 16 chr3 194661168 194661358 -32863220 - MIR SINE MIR -54 208 1 508 187 82 37 chr3 194661386 194661520 -32863058 - L1ME LINE L1 -452 5669 5530 198 320 77 33 chr3 194661603 194661784 -32862794 + L2 LINE L2 1211 1399 -1915 180 0 0 0 chr3 194662235 194662255 -32862323 + (T)n Simple_repeat Simple_repeat 1 20 0 284 364 23 29 chr3 194662427 194662600 -32861978 + L2 LINE L2 2065 2236 -1078 436 273 150 37 chr3 194662737 194662924 -32861654 + MIR SINE MIR 6 213 -49 220 327 108 43 chr3 194663099 194663497 -32861081 + L2 LINE L2 2428 2851 -463 1860 133 54 11 chr3 194665265 194665544 -32859034 + AluSx SINE Alu 1 291 -21 23 0 0 0 chr3 194666294 194666317 -32858261 + AT_rich Low_complexity Low_complexity 1 23 0 204 347 13 13 chr3 194666737 194666812 -32857766 - MER5A DNA MER1_type 0 189 115 195 250 19 19 chr3 194666768 194666820 -32857758 + MER5A DNA MER1_type 43 94 -95 * 1536 159 69 22 chr3 194667704 194667981 -32856597 + AluJo SINE Alu 1 290 -22 22 70 0 0 chr3 194667981 194668024 -32856554 + AT_rich Low_complexity Low_complexity 1 43 0 1252 182 49 8 chr3 194668046 194668293 -32856285 - AluJo SINE Alu -16 296 40 2069 76 65 4 chr3 194668425 194668701 -32855877 + AluSq SINE Alu 1 293 -20 2156 103 7 3 chr3 194668705 194669007 -32855571 + AluY SINE Alu 5 307 -4 658 167 92 17 chr3 194669167 194669287 -32855291 - FLAM_C SINE Alu 0 133 5 1491 142 109 8 chr3 194669711 194669978 -32854600 + AluJb SINE Alu 1 294 -18 2376 106 0 3 chr3 194671095 194671406 -32853172 - AluSx SINE Alu 0 312 3 31 68 0 0 chr3 194671417 194671476 -32853102 + AT_rich Low_complexity Low_complexity 1 59 0 262 265 96 0 chr3 194672192 194672275 -32852303 + MIR3 SINE MIR 100 190 -18 1944 187 35 99 chr3 194672586 194673498 -32851080 + L1MB7 LINE L1 4860 5829 -351 635 108 0 0 chr3 194673498 194673591 -32850987 - AluSp/q SINE Alu -10 303 211 1944 187 35 99 chr3 194673591 194673629 -32850949 + L1MB7 LINE L1 5829 5868 -312 2111 149 0 0 chr3 194673629 194673938 -32850640 + AluSx SINE Alu 1 309 -3 1944 187 35 99 chr3 194673938 194674364 -32850214 + L1MB7 LINE L1 5868 6159 -21 2408 60 10 0 chr3 194674364 194674665 -32849913 - AluY SINE Alu -7 304 1 2514 53 0 22 chr3 194674692 194675010 -32849568 - AluY SINE Alu 0 311 1 423 225 11 11 chr3 194675223 194675312 -32849266 + MIR SINE MIR 61 149 -113 2696 173 33 19 chr3 194675317 194675905 -32848673 - Tigger7 DNA MER2_type 0 2487 4 243 0 0 0 chr3 194676016 194676043 -32848535 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2066 104 0 7 chr3 194676045 194676332 -32848246 - AluSx SINE Alu -27 285 1 9562 193 18 48 chr3 194676492 194677515 -32847063 - L1 LINE L1 -1640 4506 3453 1683 167 7 4 chr3 194677515 194677790 -32846788 - AluJb SINE Alu -36 276 1 9562 193 18 48 chr3 194677790 194678968 -32845610 - L1 LINE L1 -2693 3453 2240 1609 208 0 3 chr3 194678968 194679261 -32845317 - AluJo SINE Alu -20 292 1 9562 193 18 48 chr3 194679261 194679508 -32845070 - L1 LINE L1 -3906 2240 1987 1745 164 10 36 chr3 194679508 194679637 -32844941 + AluJb SINE Alu 1 132 -180 333 0 0 0 chr3 194679637 194679674 -32844904 + (CA)n Simple_repeat Simple_repeat 2 38 0 1745 164 10 36 chr3 194679674 194679848 -32844730 + AluJb SINE Alu 132 296 -16 9562 193 18 48 chr3 194679848 194679859 -32844719 - L1 LINE L1 -4159 1987 1977 2013 110 4 0 chr3 194679859 194680131 -32844447 + AluSc SINE Alu 18 290 -19 9562 193 18 48 chr3 194680131 194680415 -32844163 - L1 LINE L1 -4169 1977 1686 1596 150 98 4 chr3 194680415 194680681 -32843897 + AluJb SINE Alu 1 291 -21 2299 80 3 0 chr3 194680690 194680979 -32843599 + AluY SINE Alu 1 290 -21 2144 105 4 0 chr3 194680984 194681287 -32843291 + AluSg SINE Alu 2 305 0 9562 193 18 48 chr3 194681287 194681366 -32843212 - L1 LINE L1 -4278 1868 1788 254 220 0 0 chr3 194681422 194681472 -32843106 + AluJ/monomer SINE Alu 1 50 -252 480 228 18 26 chr3 194681536 194681650 -32842928 - FRAM SINE Alu -13 163 51 1339 202 12 12 chr3 194681759 194682007 -32842571 - AluJo SINE Alu -64 248 1 3994 159 72 44 chr3 194682135 194682249 -32842329 - L1MB7 LINE L1 -17 6167 6058 1889 105 0 15 chr3 194682249 194682515 -32842063 - AluSq SINE Alu -7 306 45 3994 159 72 44 chr3 194682515 194682879 -32841699 - L1MB7 LINE L1 -126 6058 5706 2731 3 0 35 chr3 194682879 194683198 -32841380 + AluYa5 SINE Alu 1 308 -3 3994 159 72 44 chr3 194683198 194683692 -32840886 - L1MB7 LINE L1 -478 5706 5227 1445 185 83 4 chr3 194683692 194683968 -32840610 - AluJb SINE Alu -14 298 1 3994 159 72 44 chr3 194683968 194684087 -32840491 - L1MB7 LINE L1 -957 5227 5113 2168 112 0 11 chr3 194684087 194684411 -32840167 - AluSx SINE Alu 0 321 1 3994 159 72 44 chr3 194684411 194684547 -32840031 - L1MB7 LINE L1 -1071 5113 4896 2210 118 3 0 chr3 194684547 194684851 -32839727 - AluSx SINE Alu -7 305 1 1737 176 0 23 chr3 194685082 194685384 -32839194 - AluJb SINE Alu -17 295 1 783 222 27 5 chr3 194685736 194685921 -32838657 - AluSg/x SINE Alu -6 304 116 26 30 0 0 chr3 194685974 194686007 -32838571 + AT_rich Low_complexity Low_complexity 1 33 0 2411 83 0 22 chr3 194686044 194686358 -32838220 - AluSg SINE Alu -3 307 1 2339 100 3 0 chr3 194686395 194686695 -32837883 - AluSg SINE Alu -9 301 1 1858 129 64 0 chr3 194687058 194687338 -32837240 - AluSx SINE Alu -14 298 1 318 26 0 0 chr3 194687353 194687392 -32837186 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1685 115 8 0 chr3 194687396 194687631 -32836947 - AluSx SINE Alu -28 284 48 1157 88 14 0 chr3 194687633 194687781 -32836797 - AluSq/x SINE Alu -163 150 1 2121 133 3 0 chr3 194688138 194688447 -32836131 - AluSx SINE Alu -2 310 1 243 197 76 59 chr3 194688450 194688555 -32836023 + MIR SINE MIR 104 214 -48 2276 106 3 3 chr3 194688864 194689175 -32835403 + AluSx SINE Alu 1 311 -1 1381 172 31 58 chr3 194689338 194689629 -32834949 - AluJo SINE Alu -28 284 2 282 156 109 0 chr3 194689641 194689705 -32834873 - MLT2B2 LTR ERVL -444 71 1 197 224 172 0 chr3 194689872 194689930 -32834648 - L2 LINE L2 -1 3312 3245 2162 114 0 0 chr3 194689937 194690236 -32834342 - AluSx SINE Alu -13 299 1 1456 60 11 0 chr3 194690834 194691016 -32833562 + AluY SINE Alu 128 311 0 23 0 0 0 chr3 194691310 194691333 -32833245 + AT_rich Low_complexity Low_complexity 1 23 0 2181 110 3 10 chr3 194693514 194693815 -32830763 + AluSg SINE Alu 1 299 -11 31 58 0 0 chr3 194694222 194694274 -32830304 + AT_rich Low_complexity Low_complexity 1 52 0 1913 121 19 0 chr3 194694353 194694617 -32829961 + AluSg SINE Alu 1 269 -41 2179 177 36 18 chr3 194694970 194695518 -32829060 + L1M4 LINE L1 4348 4905 -1241 1257 58 53 0 chr3 194695519 194695708 -32828870 + AluY SINE Alu 1 199 -112 613 162 99 0 chr3 194695820 194695962 -32828616 - MER105 DNA DNA -42 162 7 374 158 59 30 chr3 194695971 194696072 -32828506 - MER112 DNA MER1_type -42 218 115 1121 109 0 51 chr3 194697143 194697318 -32827260 - AluSg/x SINE Alu -13 297 132 2089 105 13 41 chr3 194697318 194697632 -32826946 - AluSx SINE Alu -7 305 1 1084 164 58 29 chr3 194697841 194698048 -32826530 + AluJo SINE Alu 85 297 -15 199 250 15 44 chr3 194699108 194699176 -32825402 + L3 LINE CR1 1407 1472 -105 * 249 246 95 103 chr3 194699154 194699280 -32825298 - L2 LINE L2 -4 3309 3185 * 406 299 0 9 chr3 194699266 194699373 -32825205 + L3 LINE CR1 1453 1558 -19 1487 193 16 33 chr3 194699719 194700025 -32824553 - AluJo SINE Alu -2 310 10 1002 101 0 7 chr3 194700207 194700355 -32824223 + MER41A LTR ERV1 185 331 -223 5768 158 45 62 chr3 194700369 194700862 -32823716 - L1 LINE L1 -1913 5652 5152 1899 151 0 11 chr3 194700862 194701037 -32823541 - AluSx SINE Alu 0 308 136 2353 100 0 25 chr3 194701037 194701357 -32823221 - AluSx SINE Alu 0 312 1 1899 151 0 11 chr3 194701357 194701492 -32823086 - AluSx SINE Alu -172 136 1 5768 158 45 62 chr3 194701492 194701688 -32822890 - L1 LINE L1 -2413 5152 4954 2328 91 7 0 chr3 194701688 194701984 -32822594 - AluSq SINE Alu -15 298 1 1740 203 0 10 chr3 194701991 194702296 -32822282 - AluJo SINE Alu -10 302 1 5768 158 45 62 chr3 194702296 194703076 -32821502 - L1 LINE L1 -2617 4948 4198 2164 125 3 0 chr3 194703076 194703372 -32821206 - AluSx SINE Alu -14 298 2 923 155 0 0 chr3 194703373 194703502 -32821076 - AluSq/x SINE Alu -184 129 1 434 198 0 0 chr3 194703509 194703595 -32820983 - L1 LINE L1 -3955 3610 3525 1342 109 0 11 chr3 194703596 194703779 -32820799 + AluSg/x SINE Alu 127 307 -5 989 137 0 17 chr3 194703795 194703970 -32820608 + Tigger1 DNA MER2_type 464 635 -1783 * 4462 114 8 17 chr3 194703969 194704587 -32819991 + Tigger1 DNA MER2_type 836 1449 -969 2205 127 0 0 chr3 194704587 194704887 -32819691 - AluSg SINE Alu -10 300 1 4462 114 8 17 chr3 194704887 194704981 -32819597 + Tigger1 DNA MER2_type 1449 1542 -876 590 100 0 0 chr3 194705103 194705183 -32819395 - AluSg/x SINE Alu -18 291 212 2265 128 69 0 chr3 194705184 194705590 -32818988 + L1MA8 LINE L1 5858 6291 0 2172 91 27 3 chr3 194705595 194705892 -32818686 + AluY SINE Alu 1 304 -7 3636 176 91 6 chr3 194705892 194706754 -32817824 + L1MB4 LINE L1 5247 6180 0 500 246 160 8 chr3 194706780 194707124 -32817454 + MLT1F LTR MaLR 7 433 -109 712 198 0 102 chr3 194707194 194707371 -32817207 - FRAM SINE Alu -7 159 1 2242 103 10 3 chr3 194707586 194707888 -32816690 - AluSx SINE Alu -8 304 1 307 193 24 0 chr3 194710341 194710424 -32814154 + CT-rich Low_complexity Low_complexity 1 85 0 967 137 0 16 chr3 194710424 194710606 -32813972 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 1296 171 4 38 chr3 194710634 194710873 -32813705 - AluJb SINE Alu -81 231 1 1813 112 42 5 chr3 194710873 194711253 -32813325 - L1M2 LINE L1 -509 5782 5303 1429 176 46 32 chr3 194711253 194711537 -32813041 + AluJb SINE Alu 1 288 -24 2449 49 0 10 chr3 194711547 194711851 -32812727 + AluYa5 SINE Alu 1 301 -10 1866 181 0 3 chr3 194711870 194712174 -32812404 + AluSx SINE Alu 1 303 -9 5470 154 32 19 chr3 194712179 194713313 -32811265 - L1M2 LINE L1 -837 5309 4161 1698 132 0 72 chr3 194713459 194713612 -32810966 + Tigger1 DNA MER2_type 2110 2228 -190 2289 112 0 0 chr3 194713612 194713915 -32810663 - AluSg SINE Alu -7 303 1 1698 132 0 72 chr3 194713915 194714094 -32810484 + Tigger1 DNA MER2_type 2228 2418 0 38 22 0 0 chr3 194714123 194714168 -32810410 + AT_rich Low_complexity Low_complexity 1 45 0 284 262 121 7 chr3 194714170 194714319 -32810259 - L1ME4a LINE L1 0 6121 5956 1935 146 10 0 chr3 194714390 194714691 -32809887 - AluSx SINE Alu -8 304 1 319 242 110 0 chr3 194714769 194714860 -32809718 - L1ME4a LINE L1 -452 5669 5569 29 70 0 0 chr3 194715224 194715281 -32809297 + AT_rich Low_complexity Low_complexity 1 57 0 1662 125 33 15 chr3 194715390 194715662 -32808916 + AluSx SINE Alu 1 277 -35 218 143 20 0 chr3 194715673 194715722 -32808856 + (CA)n Simple_repeat Simple_repeat 2 51 0 2179 80 43 10 chr3 194716102 194716401 -32808177 - AluY SINE Alu -2 309 1 2256 92 0 16 chr3 194716468 194716773 -32807805 - AluSq SINE Alu -13 300 1 2119 127 0 0 chr3 194717605 194717897 -32806681 - AluSp SINE Alu -20 293 2 2413 42 0 3 chr3 194718153 194718458 -32806120 + AluY SINE Alu 1 304 0 192 77 0 0 chr3 194718591 194718617 -32805961 + (TA)n Simple_repeat Simple_repeat 1 26 0 275 325 18 24 chr3 194718938 194719107 -32805471 + AluJb SINE Alu 87 254 -48 1667 156 37 17 chr3 194719365 194719660 -32804918 - AluSx SINE Alu -11 301 1 2375 93 0 3 chr3 194719670 194719971 -32804607 - AluSx SINE Alu -12 300 1 1251 177 106 8 chr3 194721128 194721365 -32803213 + AluJo SINE Alu 1 260 -52 1671 159 25 50 chr3 194722131 194722451 -32802127 - AluJb SINE Alu 0 312 1 2194 82 43 13 chr3 194722852 194723155 -32801423 - AluSp SINE Alu -1 312 1 2131 121 0 0 chr3 194723178 194723489 -32801089 - AluSq SINE Alu 0 312 2 12526 114 34 32 chr3 194723491 194725743 -32798835 - MER41A-int LTR ERV1 -639 4376 2130 2107 125 3 0 chr3 194725743 194726030 -32798548 - AluSx SINE Alu -24 288 1 12526 114 34 32 chr3 194726030 194726190 -32798388 - MER41A-int LTR ERV1 -2885 2130 1972 1935 121 41 14 chr3 194726190 194726344 -32798234 - AluY SINE Alu -13 298 150 2129 126 0 3 chr3 194726344 194726646 -32797932 - AluSq SINE Alu -12 301 1 1935 121 41 14 chr3 194726646 194726781 -32797797 - AluY SINE Alu -161 150 1 12526 114 34 32 chr3 194726781 194727617 -32796961 - MER41A-int LTR ERV1 -3043 1972 1139 207 0 0 0 chr3 194727617 194727640 -32796938 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 12526 114 34 32 chr3 194727640 194727948 -32796630 - MER41A-int LTR ERV1 -3876 1139 833 2120 118 3 3 chr3 194727948 194728252 -32796326 - AluSg SINE Alu -6 304 1 12526 114 34 32 chr3 194728252 194728758 -32795820 - MER41A-int LTR ERV1 -4182 833 208 2138 118 0 3 chr3 194728758 194729047 -32795531 - AluSg SINE Alu -22 288 1 12526 114 34 32 chr3 194729047 194729256 -32795322 - MER41A-int LTR ERV1 -4807 208 1 812 108 0 31 chr3 194729342 194729443 -32795135 - MER41A LTR ERV1 0 554 456 2029 123 10 0 chr3 194729443 194729735 -32794843 - AluSc SINE Alu -3 306 12 812 108 0 31 chr3 194729735 194729763 -32794815 - MER41A LTR ERV1 -98 456 429 1376 155 30 110 chr3 194729763 194730098 -32794480 + AluYb8 SINE Alu 3 310 -8 1240 120 27 0 chr3 194730101 194730285 -32794293 + AluSg/x SINE Alu 116 304 -6 1584 167 60 0 chr3 194730330 194730612 -32793966 + AluJb SINE Alu 1 299 -13 2685 136 19 57 chr3 194730965 194731552 -32793026 - HUERS-P1 LTR ERV1 -3531 3887 2168 1320 189 104 23 chr3 194732261 194732647 -32791931 + L1 LINE L1 2777 3193 -2953 402 165 24 12 chr3 194733190 194733275 -32791303 - AluY SINE Alu -214 86 1 310 298 87 10 chr3 194734130 194734234 -32790344 - L2 LINE L2 -5 3308 3197 1304 170 19 63 chr3 194734391 194734662 -32789916 + AluJo SINE Alu 40 298 -14 196 302 0 19 chr3 194735274 194735327 -32789251 + MIR SINE MIR 21 72 -136 1423 60 6 0 chr3 194735612 194735779 -32788799 - AluSp SINE Alu -16 297 130 198 0 0 0 chr3 194735781 194735803 -32788775 + (TA)n Simple_repeat Simple_repeat 2 23 0 2118 93 0 24 chr3 194735803 194736092 -32788486 - AluSg SINE Alu -28 282 1 380 298 136 0 chr3 194736542 194736733 -32787845 - MIR SINE MIR -33 229 13 252 0 0 0 chr3 194736739 194736767 -32787811 + (T)n Simple_repeat Simple_repeat 1 28 0 1592 183 14 14 chr3 194737153 194737467 -32787111 + AluJo SINE Alu 1 314 0 609 284 81 18 chr3 194737498 194737548 -32787030 - MIR SINE MIR -19 243 198 305 113 274 0 chr3 194737548 194737610 -32786968 + MADE1 DNA Mariner 2 80 0 609 284 81 18 chr3 194737610 194737781 -32786797 - MIR SINE MIR -64 198 8 203 276 0 0 chr3 194738270 194738328 -32786250 - MIR SINE MIR -20 242 185 470 213 79 104 chr3 194738462 194738538 -32786040 + MIR SINE MIR 66 142 -120 180 0 0 0 chr3 194738538 194738558 -32786020 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2019 105 36 0 chr3 194738561 194738837 -32785741 - AluSx SINE Alu -26 286 1 470 213 79 104 chr3 194738837 194738958 -32785620 + MIR SINE MIR 144 262 0 21 21 0 64 chr3 194739401 194739448 -32785130 + GC_rich Low_complexity Low_complexity 1 44 0 210 254 18 0 chr3 194740096 194740151 -32784427 + MIR SINE MIR 102 157 -105 217 331 21 21 chr3 194741444 194741589 -32782989 + MIR SINE MIR 61 205 -57 523 164 50 127 chr3 194742927 194743053 -32781525 - MIR SINE MIR -1 261 157 2090 116 0 3 chr3 194743053 194743364 -32781214 - AluSx SINE Alu 0 310 1 523 164 50 127 chr3 194743364 194743456 -32781122 - MIR SINE MIR -105 157 59 514 201 114 13 chr3 194744254 194744403 -32780175 + MER5B DNA MER1_type 7 170 -8 1811 121 18 26 chr3 194744422 194744695 -32779883 + AluSx SINE Alu 42 312 0 213 211 19 0 chr3 194744695 194744737 -32779841 + GA-rich Low_complexity Low_complexity 10 55 0 180 338 68 0 chr3 194744783 194744857 -32779721 - L2 LINE L2 -5 3267 3189 315 71 0 0 chr3 194745558 194745600 -32778978 + (TG)n Simple_repeat Simple_repeat 2 43 0 591 270 95 5 chr3 194747134 194747345 -32777233 + MIR SINE MIR 33 262 0 1760 115 8 4 chr3 194747415 194747676 -32776902 - AluSg SINE Alu -4 306 45 457 196 106 67 chr3 194747694 194747873 -32776705 - L1MC5 LINE L1 -29 7932 7747 2364 99 3 0 chr3 194747981 194748285 -32776293 + AluSp SINE Alu 1 305 -8 1240 120 27 0 chr3 194748288 194748472 -32776106 + AluSg/x SINE Alu 116 304 -6 1584 167 60 0 chr3 194748517 194748799 -32775779 + AluJb SINE Alu 1 299 -13 216 163 41 0 chr3 194748841 194748890 -32775688 + (TCTG)n Simple_repeat Simple_repeat 4 54 0 189 171 0 0 chr3 194749229 194749264 -32775314 + CT-rich Low_complexity Low_complexity 1 35 0 2121 114 3 22 chr3 194751171 194751487 -32773091 - AluSq SINE Alu -3 310 1 201 74 0 0 chr3 194751986 194752013 -32772565 + (TTA)n Simple_repeat Simple_repeat 2 28 0 714 221 70 0 chr3 194752078 194752236 -32772342 - MER3 DNA MER1_type 0 209 41 205 387 134 0 chr3 194752673 194752815 -32771763 - L2 LINE L2 0 3272 3112 28 0 0 0 chr3 194753671 194753699 -32770879 + AT_rich Low_complexity Low_complexity 1 28 0 2103 139 7 0 chr3 194753772 194754081 -32770497 - AluJb SINE Alu -1 311 1 2068 142 0 0 chr3 194755460 194755762 -32768816 - AluSx SINE Alu -10 302 1 1432 172 114 0 chr3 194756245 194756535 -32768043 - MER33 DNA MER1_type 0 324 2 262 278 76 42 chr3 194756784 194756913 -32767665 - MIR SINE MIR -47 161 27 2178 110 3 19 chr3 194756941 194757258 -32767320 + AluSx SINE Alu 1 312 0 222 302 12 12 chr3 194757318 194757404 -32767174 - MER5A DNA MER1_type -100 89 4 28 0 0 0 chr3 194757793 194757821 -32766757 + AT_rich Low_complexity Low_complexity 1 28 0 459 284 148 0 chr3 194758384 194758539 -32766039 - MER5A DNA MER1_type -3 186 9 533 226 7 29 chr3 194758804 194758941 -32765637 - MER63 DNA MER1_type -302 760 1 613 269 27 5 chr3 194759398 194759584 -32764994 - MIR SINE MIR -1 261 72 575 241 84 70 chr3 194759663 194760008 -32764570 - L1ME4a LINE L1 -152 5969 5620 371 258 135 12 chr3 194760952 194761115 -32763463 + MER5A DNA MER1_type 7 189 0 195 255 0 0 chr3 194761168 194761215 -32763363 - MIR SINE MIR -72 136 90 631 283 112 64 chr3 194761359 194761779 -32762799 + MLT1K LTR MaLR 143 582 -6 264 299 0 13 chr3 194761903 194761980 -32762598 + MLT1K LTR MaLR 189 264 -324 242 250 0 0 chr3 194762173 194762229 -32762349 + MLT1K LTR MaLR 522 577 -11 1119 236 116 58 chr3 194762441 194762873 -32761705 - LTR33A LTR ERVL -6 517 61 283 244 144 44 chr3 194763775 194763865 -32760713 - MLT1K LTR MaLR -342 246 148 325 309 59 7 chr3 194764510 194764646 -32759932 - L2 LINE L2 -14 3258 3116 1903 164 0 0 chr3 194764709 194765002 -32759576 - AluSx SINE Alu -19 293 1 2177 103 3 0 chr3 194765085 194765376 -32759202 + AluSc SINE Alu 1 292 -17 1118 164 5 61 chr3 194765784 194765866 -32758712 - MER45B DNA AcHobo -839 201 116 2286 89 0 17 chr3 194765866 194766168 -32758410 + AluSx SINE Alu 1 297 -15 1118 164 5 61 chr3 194766168 194766298 -32758280 - MER45B DNA AcHobo -924 116 1 391 349 48 0 chr3 194766402 194766568 -32758010 - MIR SINE MIR -86 176 3 593 236 0 0 chr3 194766697 194766824 -32757754 - MIR SINE MIR -59 203 77 1443 37 0 0 chr3 194766917 194767081 -32757497 + AluY SINE Alu 140 303 -8 2000 137 7 10 chr3 194767101 194767400 -32757178 + AluJb SINE Alu 9 306 -6 2198 34 0 15 chr3 194767573 194767842 -32756736 + L1PA4 LINE L1 5888 6152 -3 2223 114 7 3 chr3 194767901 194768207 -32756371 + AluSx SINE Alu 1 307 -5 2106 118 7 0 chr3 194768208 194768496 -32756082 + AluSx SINE Alu 1 290 -22 1548 221 116 57 chr3 194770497 194770999 -32753579 - Charlie7 DNA MER1_type -68 2544 1984 2168 131 16 0 chr3 194770999 194771305 -32753273 - AluSx SINE Alu -1 311 1 1548 221 116 57 chr3 194771305 194771525 -32753053 - Charlie7 DNA MER1_type -628 1984 1779 2133 135 3 0 chr3 194771591 194771902 -32752676 - AluSx SINE Alu 0 312 1 512 225 91 34 chr3 194771983 194772192 -32752386 - Charlie7 DNA MER1_type -2191 421 201 784 245 86 16 chr3 194773553 194773925 -32750653 - L1ME4a LINE L1 0 6121 5724 2241 91 14 3 chr3 194774127 194774424 -32750154 - AluSq SINE Alu -13 300 1 317 277 17 17 chr3 194774444 194774563 -32750015 - L2 LINE L2 0 3313 3195 5729 109 32 19 chr3 194775861 194776408 -32748170 - L1PA16 LINE L1 0 6166 5601 2174 134 10 0 chr3 194776408 194776715 -32747863 - AluSx SINE Alu -2 310 1 5729 109 32 19 chr3 194776715 194777101 -32747477 - L1PA16 LINE L1 -565 5601 5222 1479 167 89 4 chr3 194777103 194777373 -32747205 - AluJb SINE Alu -19 293 1 865 170 0 0 chr3 194777373 194777508 -32747070 - AluJb SINE Alu -177 135 1 2162 153 27 44 chr3 194777508 194777816 -32746762 - L1MB2 LINE L1 -280 5891 5590 2184 138 0 0 chr3 194777816 194778128 -32746450 - AluSx SINE Alu 0 312 1 2162 153 27 44 chr3 194778128 194778230 -32746348 - L1MB2 LINE L1 -581 5590 5488 1886 195 79 5 chr3 194778666 194779072 -32745506 + MER63B DNA MER1_type 1 436 0 22 35 0 0 chr3 194779626 194779655 -32744923 + AT_rich Low_complexity Low_complexity 1 29 0 2397 77 3 0 chr3 194781568 194781855 -32742723 - AluSp SINE Alu -25 288 1 1139 110 0 0 chr3 194783237 194783383 -32741195 + AluSg/x SINE Alu 148 293 -19 184 305 41 102 chr3 194783856 194784053 -32740525 + L2 LINE L2 2869 3053 -219 972 175 0 12 chr3 194784164 194784324 -32740254 - FRAM SINE Alu -19 157 1 215 196 0 22 chr3 194784380 194784426 -32740152 + L2 LINE L2 3265 3309 -4 202 188 0 94 chr3 194784446 194784510 -32740068 - L2 LINE L2 0 3313 3256 22 0 0 0 chr3 194787465 194787487 -32737091 + AT_rich Low_complexity Low_complexity 1 22 0 845 276 21 13 chr3 194788132 194788371 -32736207 + Charlie8 DNA MER1_type 26 266 -2151 2068 147 7 0 chr3 194788930 194789237 -32735341 - AluJb SINE Alu -3 309 1 453 265 34 20 chr3 194789343 194789490 -32735088 + MIR SINE MIR 48 196 -66 614 213 13 32 chr3 194789493 194789648 -32734930 - MER5B DNA MER1_type -2 176 25 376 209 9 45 chr3 194790659 194790769 -32733809 - MIR3 SINE MIR -8 200 95 387 41 0 0 chr3 194790950 194790999 -32733579 + (TG)n Simple_repeat Simple_repeat 2 50 0 192 77 0 0 chr3 194791365 194791391 -32733187 + (GGGA)n Simple_repeat Simple_repeat 4 29 0 282 29 0 0 chr3 194791732 194791767 -32732811 + (TG)n Simple_repeat Simple_repeat 1 35 0 342 247 21 0 chr3 194792030 194792123 -32732455 - L1MC5 LINE L1 -158 7803 7709 23 33 0 0 chr3 194792140 194792170 -32732408 + AT_rich Low_complexity Low_complexity 1 30 0 577 319 18 13 chr3 194792227 194792456 -32732122 - MARNA DNA Mariner -102 484 255 2189 92 10 10 chr3 194792728 194793022 -32731556 + AluSx SINE Alu 1 294 -18 2449 63 0 10 chr3 194793125 194793428 -32731150 + AluY SINE Alu 1 300 -11 195 147 29 0 chr3 194794484 194794518 -32730060 + MIR SINE MIR 111 145 -117 1192 233 23 7 chr3 194794556 194794874 -32729704 + L1ME3A LINE L1 5569 5892 -278 704 188 65 65 chr3 194796264 194796358 -32728220 - MER5A DNA MER1_type -19 170 74 2490 78 0 0 chr3 194796358 194796654 -32727924 - AluSx SINE Alu -16 296 1 704 188 65 65 chr3 194796654 194796729 -32727849 - MER5A DNA MER1_type -114 75 1 518 192 60 54 chr3 194796739 194796906 -32727672 + MER5B DNA MER1_type 7 174 -4 205 247 65 0 chr3 194796992 194797069 -32727509 + MER5A DNA MER1_type 1 82 -107 508 226 30 43 chr3 194797351 194797515 -32727063 - MIR SINE MIR -70 192 31 668 185 219 0 chr3 194797584 194797730 -32726848 - MER45A DNA AcHobo 0 178 1 291 313 10 0 chr3 194797829 194797928 -32726650 + MIR SINE MIR 49 148 -60 627 255 211 0 chr3 194798015 194798219 -32726359 + MIR SINE MIR 16 262 0 36 23 0 0 chr3 194798688 194798731 -32725847 + AT_rich Low_complexity Low_complexity 1 43 0 2111 135 0 0 chr3 194798731 194799019 -32725559 - AluSx SINE Alu -24 288 1 182 300 71 0 chr3 194799355 194799425 -32725153 - L2 LINE L2 -8 3305 3231 2062 125 0 0 chr3 194799483 194799817 -32724761 + AluSg SINE Alu 1 334 0 2282 100 0 29 chr3 194802028 194802337 -32722241 - AluSg SINE Alu -5 305 6 596 262 24 12 chr3 194802513 194802681 -32721897 + MER5A DNA MER1_type 18 187 -2 438 291 201 10 chr3 194803285 194803484 -32721094 + MIR SINE MIR 14 250 -12 188 230 100 50 chr3 194807105 194807205 -32717373 + MIR3 SINE MIR 2 106 -102 2351 97 0 0 chr3 194807234 194807532 -32717046 + AluSg SINE Alu 1 298 -12 1623 215 68 23 chr3 194808394 194808878 -32715700 + Charlie4a DNA MER1_type 3 508 0 1490 189 4 4 chr3 194809203 194809484 -32715094 + L1 LINE L1 4855 5135 -1011 7631 87 23 4 chr3 194809666 194810881 -32713697 + L1MA1 LINE L1 5057 6295 -7 318 274 0 0 chr3 194810938 194811062 -32713516 + (CA)n Simple_repeat Simple_repeat 2 125 0 332 295 16 16 chr3 194811134 194811263 -32713315 + L3 LINE CR1 1151 1279 -298 762 258 74 0 chr3 194811331 194811560 -32713018 + MIR SINE MIR 15 260 -2 209 136 23 23 chr3 194811622 194811666 -32712912 + CT-rich Low_complexity Low_complexity 3 46 0 319 268 72 0 chr3 194811686 194811783 -32712795 - L2 LINE L2 -22 3250 3147 256 297 216 11 chr3 194812169 194812453 -32712125 - LTR33 LTR ERVL -90 431 90 1199 142 0 0 chr3 194812993 194813155 -32711423 + AluJb SINE Alu 129 290 -22 192 284 27 27 chr3 194814341 194814415 -32710163 + L3 LINE CR1 739 812 -765 283 274 111 33 chr3 194814773 194814926 -32709652 + MIR SINE MIR 48 212 -50 318 106 0 0 chr3 194817730 194817777 -32706801 + (A)n Simple_repeat Simple_repeat 1 47 0 400 213 21 0 chr3 194818227 194818321 -32706257 + MIR3 SINE MIR 109 204 -4 487 296 50 20 chr3 194818849 194819048 -32705530 + MIR SINE MIR 24 228 -34 2313 55 0 4 chr3 194819636 194819909 -32704669 + AluY SINE Alu 40 311 0 426 370 52 0 chr3 194820405 194820578 -32704000 + MIR3 SINE MIR 15 196 -12 2308 105 10 3 chr3 194820803 194821107 -32703471 + AluSg SINE Alu 1 306 -4 733 245 90 45 chr3 194821353 194821688 -32702890 - L1ME4a LINE L1 -212 5909 5560 242 255 92 41 chr3 194822532 194822630 -32701948 - L2 LINE L2 -8 3264 3162 185 304 0 87 chr3 194822895 194822987 -32701591 + MER5A DNA MER1_type 75 158 -31 214 370 10 0 chr3 194823520 194823620 -32700958 + MIR3 SINE MIR 103 203 -5 2252 105 3 16 chr3 194824946 194825261 -32699317 - AluSx SINE Alu 0 312 2 2611 247 42 11 chr3 194825467 194826227 -32698351 + MER20B DNA MER1_type 1 784 0 2140 115 0 7 chr3 194826246 194826542 -32698036 + AluSx SINE Alu 1 294 -18 296 277 158 0 chr3 194828608 194828709 -32695869 - MIR SINE MIR -61 147 31 233 351 14 0 chr3 194828787 194828861 -32695717 - L2 LINE L2 -62 3210 3136 1484 128 0 0 chr3 194830170 194830373 -32694205 + AluSx SINE Alu 1 203 -109 508 63 0 0 chr3 194830374 194830437 -32694141 + AluSp SINE Alu 70 132 -181 2306 97 13 0 chr3 194830439 194830739 -32693839 + AluSp SINE Alu 1 304 -9 2152 109 0 0 chr3 194830755 194831030 -32693548 + AluSx SINE Alu 6 280 -32 249 57 0 0 chr3 194831032 194831067 -32693511 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 221 116 0 23 chr3 194831245 194831288 -32693290 + (ATG)n Simple_repeat Simple_repeat 1 42 0 208 315 0 34 chr3 194831666 194831755 -32692823 + MIR SINE MIR 163 248 -14 2366 92 23 0 chr3 194831764 194832070 -32692508 + AluSp SINE Alu 1 313 0 207 319 75 0 chr3 194832079 194832173 -32692405 + MIR SINE MIR 81 181 -81 188 205 0 0 chr3 194832373 194832412 -32692166 - L3 LINE CR1 -11 1566 1528 2152 17 0 0 chr3 194833297 194833532 -32691046 - AluYa5 SINE Alu -3 308 74 182 191 21 0 chr3 194834142 194834189 -32690389 + (TA)n Simple_repeat Simple_repeat 2 49 0 391 255 67 7 chr3 194835469 194835618 -32688960 - MIR SINE MIR 0 262 105 2037 127 0 27 chr3 194835673 194835972 -32688606 + AluSx SINE Alu 1 291 -21 195 42 0 0 chr3 194835972 194835996 -32688582 + (TA)n Simple_repeat Simple_repeat 2 25 0 225 286 26 0 chr3 194836141 194836218 -32688360 - MIR SINE MIR -153 109 31 424 296 9 5 chr3 194836338 194836484 -32688094 - MIR3 SINE MIR -48 160 32 817 148 8 0 chr3 194837083 194837211 -32687367 + AluJo SINE Alu 1 129 -173 27 29 0 0 chr3 194837211 194837245 -32687333 + AT_rich Low_complexity Low_complexity 1 34 0 917 226 0 0 chr3 194837256 194837433 -32687145 + AluJo SINE Alu 130 306 -6 534 281 53 6 chr3 194837459 194837630 -32686948 + MIR SINE MIR 8 186 -76 248 268 155 0 chr3 194837694 194837791 -32686787 + MIR SINE MIR 136 247 -15 432 283 48 21 chr3 194838659 194838846 -32685732 + MIR SINE MIR 21 212 -50 513 273 106 100 chr3 194839957 194840137 -32684441 + MLT1J LTR MaLR 35 212 -299 2241 117 3 0 chr3 194840137 194840444 -32684134 + AluSx SINE Alu 1 308 -4 513 273 106 100 chr3 194840444 194840724 -32683854 + MLT1J LTR MaLR 212 498 -13 587 307 28 24 chr3 194840744 194840998 -32683580 + MIR SINE MIR 2 256 -6 393 179 155 0 chr3 194842037 194842121 -32682457 + MER5B DNA MER1_type 26 122 -56 3760 229 15 50 chr3 194842121 194842285 -32682293 + L1ME1 LINE L1 5167 5335 -831 2139 122 7 0 chr3 194842285 194842579 -32681999 + AluSg SINE Alu 1 296 -14 3760 229 15 50 chr3 194842579 194842735 -32681843 + L1ME1 LINE L1 5335 5495 -671 194 0 39 0 chr3 194842735 194842761 -32681817 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 3760 229 15 50 chr3 194842761 194843454 -32681124 + L1ME1 LINE L1 5495 6162 -4 706 249 80 0 chr3 194843713 194843914 -32680664 - MIR SINE MIR 0 262 46 666 361 36 23 chr3 194843920 194844313 -32680265 + L2 LINE L2 817 1214 -2100 196 324 92 14 chr3 194844313 194844455 -32680123 - L2 LINE L2 -2936 378 226 538 260 155 11 chr3 194844791 194844972 -32679606 + MER63A DNA MER1_type 2 208 -2 1910 108 0 70 chr3 194846415 194846730 -32677848 + AluSx SINE Alu 1 293 -19 2425 103 0 0 chr3 194846762 194847073 -32677505 + AluSx SINE Alu 1 311 -1 548 217 128 6 chr3 194847948 194848128 -32676450 + MIR SINE MIR 42 243 -19 1368 234 46 18 chr3 194848413 194848916 -32675662 + MER20B DNA MER1_type 184 781 -2 351 301 114 16 chr3 194849543 194849666 -32674912 - L2 LINE L2 0 3272 3138 379 253 128 69 chr3 194849733 194850037 -32674541 - L1ME4a LINE L1 0 6121 5800 284 303 39 39 chr3 194850097 194850252 -32674326 - L2 LINE L2 0 3313 3159 2198 186 58 5 chr3 194850283 194850696 -32673882 + MLT1C LTR MaLR 1 435 -32 389 73 162 44 chr3 194850696 194850764 -32673814 - MADE1 DNA Mariner 0 80 5 301 29 0 0 chr3 194850768 194850802 -32673776 + MLT1B LTR MaLR 357 390 0 231 189 90 26 chr3 194851009 194851108 -32673470 - MIR SINE MIR -63 145 77 264 293 12 0 chr3 194851212 194851294 -32673284 - L2 LINE L2 -550 2764 2682 598 261 36 6 chr3 194851622 194851787 -32672791 - MER5B DNA MER1_type 0 178 9 271 324 56 14 chr3 194852729 194852871 -32671707 - L3 LINE CR1 -67 1510 1363 847 242 51 0 chr3 194853052 194853267 -32671311 + MIR SINE MIR 16 241 -21 544 325 42 28 chr3 194853948 194854231 -32670347 - L3 LINE CR1 -179 1398 1112 338 0 24 0 chr3 194854293 194854335 -32670243 + (TG)n Simple_repeat Simple_repeat 1 43 0 515 278 84 56 chr3 194854741 194855107 -32669471 - MLT1I LTR MaLR -20 389 56 893 224 193 38 chr3 194856160 194856610 -32667968 + LTR33 LTR ERVL 2 521 0 383 276 53 13 chr3 194856701 194856853 -32667725 + MIR SINE MIR 59 216 -46 238 293 47 38 chr3 194857263 194857369 -32667209 + MIR SINE MIR 37 143 -65 1407 199 123 18 chr3 194857727 194858134 -32666444 - MLT1D LTR MaLR 0 505 12 768 271 79 6 chr3 194859687 194860012 -32664566 + L2 LINE L2 2728 3069 -244 321 222 16 16 chr3 194860055 194860181 -32664397 + (TCTA)n Simple_repeat Simple_repeat 1 126 0 246 194 0 56 chr3 194860208 194860280 -32664298 + L2 LINE L2 3158 3225 -88 3297 149 7 25 chr3 194860371 194860928 -32663650 - MER44D DNA MER2_type -1 604 3 24 0 0 0 chr3 194860929 194860953 -32663625 + AT_rich Low_complexity Low_complexity 1 24 0 300 298 78 31 chr3 194861574 194861765 -32662813 + L1ME4a LINE L1 5378 5577 -544 391 276 27 68 chr3 194861774 194861958 -32662620 + L1ME4a LINE L1 5655 5830 -291 1739 160 14 14 chr3 194861958 194862246 -32662332 + AluJo SINE Alu 1 288 -24 391 276 27 68 chr3 194862246 194862282 -32662296 + L1ME4a LINE L1 5830 5866 -255 338 103 191 15 chr3 194862399 194862467 -32662111 - MADE1 DNA Mariner 0 80 1 345 276 22 37 chr3 194863148 194863282 -32661296 + L2 LINE L2 1870 2001 -1313 2366 86 23 0 chr3 194864012 194864316 -32660262 + AluSp SINE Alu 3 313 0 2319 118 0 0 chr3 194864382 194864688 -32659890 - AluSg SINE Alu -2 308 3 192 40 0 0 chr3 194864978 194865003 -32659575 + (CA)n Simple_repeat Simple_repeat 2 26 0 324 200 53 27 chr3 194865169 194865244 -32659334 - Tigger5 DNA MER2_type -3 2320 2244 * 428 197 20 17 chr3 194865241 194865381 -32659197 - Tigger5 DNA MER2_type -2129 194 1 433 205 49 33 chr3 194865384 194865506 -32659072 - MIR SINE MIR -78 184 61 1247 151 24 5 chr3 194865549 194865754 -32658824 + MER3 DNA MER1_type 1 209 0 22 56 0 0 chr3 194866415 194866451 -32658127 + AT_rich Low_complexity Low_complexity 1 36 0 609 260 18 12 chr3 194867549 194867718 -32656860 - MER5B DNA MER1_type 0 178 9 264 270 16 0 chr3 194867758 194867821 -32656757 + CT-rich Low_complexity Low_complexity 5 68 0 2675 109 28 10 chr3 194867951 194868345 -32656233 - Tigger2 DNA MER2_type -1 2717 2317 411 316 107 23 chr3 194868453 194868730 -32655848 - L1MC/D LINE L1 -362 5759 5512 260 234 78 0 chr3 194869028 194869092 -32655486 - MER5A DNA MER1_type -80 109 41 325 273 14 84 chr3 194869204 194869347 -32655231 + MER5B DNA MER1_type 2 134 -44 212 368 53 26 chr3 194869531 194869683 -32654895 + L2 LINE L2 3117 3272 0 181 313 0 30 chr3 194869758 194869825 -32654753 - MIR SINE MIR -62 146 82 2325 95 3 7 chr3 194869851 194870156 -32654422 - AluSc SINE Alu -5 304 1 1264 212 71 77 chr3 194870727 194871155 -32653423 - MER20B DNA MER1_type 0 783 357 2519 84 0 0 chr3 194871155 194871464 -32653114 - AluSq SINE Alu -4 309 1 1264 212 71 77 chr3 194871464 194871516 -32653062 - MER20B DNA MER1_type -426 357 306 4851 164 30 28 chr3 194871529 194872854 -32651724 - L1MB7 LINE L1 -22 6162 4851 294 281 0 0 chr3 194872982 194873064 -32651514 - L1MB7 LINE L1 -1288 4858 4777 924 261 84 14 chr3 194873065 194873349 -32651229 - MER20B DNA MER1_type -474 309 6 265 184 31 133 chr3 194873813 194873911 -32650667 + L2 LINE L2 3185 3272 0 240 111 0 0 chr3 194874105 194874141 -32650437 + (CAT)n Simple_repeat Simple_repeat 1 36 0 229 289 45 32 chr3 194874532 194874688 -32649890 - L1ME4a LINE L1 0 6121 5964 2286 94 0 3 chr3 194875529 194875817 -32648761 + AluSg SINE Alu 1 287 -23 185 0 40 0 chr3 194875817 194875842 -32648736 + (TA)n Simple_repeat Simple_repeat 2 27 0 1286 219 144 14 chr3 194875853 194876123 -32648455 - L1ME4a LINE L1 -8 6113 5879 2014 169 45 0 chr3 194876123 194876455 -32648123 - MER7A DNA MER2_type 0 346 2 1286 219 144 14 chr3 194876455 194876608 -32647970 - L1ME4a LINE L1 -242 5879 5635 331 206 0 0 chr3 194876745 194876808 -32647770 + MIR3 SINE MIR 105 167 -41 309 339 76 0 chr3 194876971 194877154 -32647424 + MIR SINE MIR 12 208 -54 311 278 120 19 chr3 194878038 194878146 -32646432 - L2 LINE L2 -1 3271 3153 242 252 78 58 chr3 194878184 194878214 -32646364 + MIR3 SINE MIR 2 30 -178 872 239 47 31 chr3 194878214 194878469 -32646109 + MIR SINE MIR 4 262 0 242 252 78 58 chr3 194878469 194878541 -32646037 + MIR3 SINE MIR 30 106 -102 651 191 39 117 chr3 194878541 194878728 -32645850 + ERVL LTR ERVL 4995 5162 -602 2179 117 0 49 chr3 194878728 194879053 -32645525 + AluSx SINE Alu 1 309 -3 651 191 39 117 chr3 194879053 194879095 -32645483 + ERVL LTR ERVL 5162 5206 -558 180 286 0 91 chr3 194879097 194879174 -32645404 + MIR3 SINE MIR 112 181 -27 25 31 0 0 chr3 194880109 194880141 -32644437 + AT_rich Low_complexity Low_complexity 1 32 0 409 263 54 47 chr3 194880932 194881257 -32643321 + L1P1 LINE L1 5188 5518 -637 196 261 57 57 chr3 194881831 194881919 -32642659 + L2 LINE L2 3145 3232 -40 379 340 22 22 chr3 194882065 194882269 -32642309 + MIR SINE MIR 21 217 -45 6619 97 6 2 chr3 194882333 194883289 -32641289 + L1PB1 LINE L1 5192 6150 -1 1868 157 0 17 chr3 194883405 194883704 -32640874 - AluSx SINE Alu -18 294 1 2445 89 0 9 chr3 194884048 194884363 -32640215 - AluSx SINE Alu 0 312 1 345 261 187 22 chr3 194885018 194885152 -32639426 - MIR3 SINE MIR -17 191 36 348 289 186 6 chr3 194885244 194885400 -32639178 + MIR SINE MIR 31 214 -48 216 0 0 0 chr3 194885589 194885613 -32638965 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 315 322 29 53 chr3 194886668 194886839 -32637739 - MIR3 SINE MIR -25 183 17 219 146 0 0 chr3 194887454 194887495 -32637083 + (A)n Simple_repeat Simple_repeat 1 41 0 25 0 0 0 chr3 194887628 194887653 -32636925 + AT_rich Low_complexity Low_complexity 1 25 0 19657 30 1 0 chr3 194887653 194890638 -32633940 - L1PA3 LINE L1 -3 6152 3167 1655 163 36 11 chr3 194890816 194891132 -32633446 + AluJb SINE Alu 1 323 0 1003 97 8 8 chr3 194891497 194891631 -32632947 - L1PB3 LINE L1 -11 6143 6010 2203 129 0 6 chr3 194892421 194892732 -32631846 + AluSg SINE Alu 1 309 -1 437 262 152 8 chr3 194892898 194893069 -32631509 + MIR SINE MIR 4 197 -62 509 223 102 38 chr3 194895453 194895610 -32628968 + MIR3 SINE MIR 2 168 -40 205 284 75 30 chr3 194895836 194895903 -32628675 + MIR SINE MIR 83 152 -56 476 313 31 51 chr3 194896284 194896479 -32628099 + MIR3 SINE MIR 15 205 -3 403 273 29 43 chr3 194897364 194897503 -32627075 - MER20 DNA MER1_type -21 198 62 373 292 31 23 chr3 194897801 194897956 -32626622 - MIR3 SINE MIR -61 147 13 2921 13 0 0 chr3 194897979 194898296 -32626282 + AluYb8 SINE Alu 1 317 -1 416 266 9 9 chr3 194899155 194899264 -32625314 + MIR SINE MIR 72 180 -82 212 344 41 16 chr3 194899433 194899555 -32625023 - MIR3 SINE MIR -3 205 81 236 319 96 22 chr3 194902367 194902502 -32622076 - MIR SINE MIR -50 212 68 1054 209 5 14 chr3 194902935 194903146 -32621432 + MER3 DNA MER1_type 1 209 0 202 362 43 0 chr3 194903597 194903691 -32620887 + MIR SINE MIR 157 254 -8 269 310 150 38 chr3 194904133 194904315 -32620263 + MIR3 SINE MIR 1 202 -6 24 53 0 0 chr3 194906232 194906270 -32618308 + GC_rich Low_complexity Low_complexity 1 38 0 196 254 262 0 chr3 194907324 194907446 -32617132 + MIR SINE MIR 81 234 -28 292 321 52 41 chr3 194908152 194908352 -32616226 + MIR SINE MIR 17 216 -46 386 258 17 73 chr3 194909653 194909831 -32614747 - L2 LINE L2 -37 3276 3109 1556 207 52 3 chr3 194910622 194910984 -32613594 + MER113 DNA MER1_type? 91 470 -51 546 258 145 6 chr3 194910985 194911144 -32613434 - MER5A DNA MER1_type 0 189 9 220 328 16 0 chr3 194911296 194911357 -32613221 - L2 LINE L2 -27 3286 3225 370 312 8 16 chr3 194911604 194911729 -32612849 - MLT1I LTR MaLR -19 390 267 434 291 102 24 chr3 194912267 194912473 -32612105 - MIR SINE MIR -6 256 35 353 335 96 5 chr3 194913019 194913207 -32611371 + MIR SINE MIR 10 214 -48 259 348 9 0 chr3 194913286 194913401 -32611177 + MIR3 SINE MIR 65 180 -28 44896 38 10 3 chr3 194965220 194970961 -32553617 - L1P1 LINE L1 -391 5764 4 849 233 55 42 chr3 194971438 194971746 -32552832 - MLT1G LTR MaLR -293 302 1 597 221 0 34 chr3 194971926 194972075 -32552503 - L2 LINE L2 0 3313 3170 747 220 83 28 chr3 194972078 194972296 -32552282 - MIR SINE MIR -31 231 2 381 287 39 8 chr3 194972302 194972431 -32552147 - MIR3 SINE MIR -24 184 52 352 276 0 73 chr3 194973397 194973520 -32551058 + MER91B DNA MER1_type 2 115 -75 330 281 21 0 chr3 194973550 194973646 -32550932 + MER91B DNA MER1_type 90 187 -3 789 214 25 0 chr3 194973779 194973938 -32550640 - MER5B DNA MER1_type -15 163 1 263 253 25 13 chr3 194973948 194974027 -32550551 + (TGGA)n Simple_repeat Simple_repeat 1 80 0 329 332 15 52 chr3 194974066 194974334 -32550244 + L2 LINE L2 2807 3064 -208 2724 85 95 5 chr3 194974611 194975022 -32549556 - LTR7 LTR ERV1 -2 448 1 2426 101 45 13 chr3 194975022 194975400 -32549178 - HERVH LTR ERV1 0 7713 7324 1358 129 23 9 chr3 194975400 194975617 -32548961 - HERVH LTR ERV1 -1894 5819 5600 4332 146 8 1 chr3 194975618 194976276 -32548302 - HERVH LTR ERV1 -2564 5149 4488 17760 87 9 18 chr3 194976278 194980283 -32544295 - HERVH LTR ERV1 -3720 3993 1 2893 85 95 7 chr3 194980285 194980697 -32543881 - LTR7 LTR ERV1 -2 448 1 374 316 72 7 chr3 194980805 194980944 -32543634 - MIR3 SINE MIR -23 185 38 301 310 134 0 chr3 194981496 194981744 -32542834 + Charlie8 DNA MER1_type 29 1424 -993 253 301 24 41 chr3 194982197 194982320 -32542258 + MIR3 SINE MIR 4 124 -84 822 289 67 12 chr3 194982582 194982911 -32541667 - L1MC4a LINE L1 -1907 5901 5555 814 208 86 13 chr3 194983071 194983456 -32541122 + LTR54B LTR ERV1 12 453 -45 250 167 21 0 chr3 194983528 194983576 -32541002 + LTR54 LTR ERV1 462 510 0 994 122 0 0 chr3 194984060 194984191 -32540387 - AluJo SINE Alu -20 292 162 3499 50 0 104 chr3 194984192 194984692 -32539886 - LTR7 LTR ERV1 -2 448 1 16431 64 6 1 chr3 194984692 194986795 -32537783 - HERVH LTR ERV1 0 7713 5600 4508 139 0 1 chr3 194986796 194987459 -32537119 - HERVH LTR ERV1 -2564 5149 4488 3306 123 4 6 chr3 194987461 194987964 -32536614 - HERVH LTR ERV1 -3720 3993 3492 880 130 34 0 chr3 194987954 194988100 -32536478 - HERVH LTR ERV1 -4423 3290 3140 * 17246 94 18 32 chr3 194988094 194991238 -32533340 - HERVH LTR ERV1 -4726 2987 1 3419 52 0 108 chr3 194991240 194991742 -32532836 - LTR7 LTR ERV1 -2 448 1 884 175 24 30 chr3 194991742 194991908 -32532670 - AluJo SINE Alu -145 167 3 306 208 14 56 chr3 194992744 194992816 -32531762 + MER5B DNA MER1_type 41 109 -69 210 182 30 61 chr3 194993116 194993215 -32531363 + (TTTA)n Simple_repeat Simple_repeat 1 96 0 1437 292 65 20 chr3 194993835 194994345 -32530233 - MER115 DNA AcHobo -39 654 122 2312 198 29 7 chr3 194994367 194994821 -32529757 - L1MD3 LINE L1 0 7995 7532 311 180 16 16 chr3 194994875 194994936 -32529642 - Charlie8 DNA MER1_type -989 1428 1368 441 152 25 13 chr3 194995437 194995516 -32529062 - MLT1I LTR MaLR 0 409 330 383 288 209 28 chr3 194995641 194995856 -32528722 - MLT1I LTR MaLR -149 260 7 2561 164 107 39 chr3 194995964 194996451 -32528127 + MLT2B1 LTR ERVL 1 520 0 1816 117 8 4 chr3 194996847 194997104 -32527474 + AluSg SINE Alu 1 258 -52 2238 86 3 30 chr3 194997234 194997538 -32527040 - AluY SINE Alu -15 296 1 329 288 50 86 chr3 194997577 194997855 -32526723 + L3 LINE CR1 1001 1268 -309 262 376 57 25 chr3 194998870 194999149 -32525429 + L2 LINE L2 2044 2331 -983 212 340 87 39 chr3 194999896 194999999 -32524579 + L2 LINE L2 3144 3251 -21 21 82 0 0 chr3 195001177 195001226 -32523352 + AT_rich Low_complexity Low_complexity 1 49 0 625 309 37 0 chr3 195001541 195001732 -32522846 - HAL1 LINE L1 -1612 895 698 1612 232 46 24 chr3 195001732 195002142 -32522436 - MLT1D LTR MaLR -86 419 1 2778 111 5 11 chr3 195002172 195002549 -32522029 - THE1C LTR MaLR 0 375 1 33 56 0 0 chr3 195002721 195002775 -32521803 + AT_rich Low_complexity Low_complexity 1 54 0 1974 138 0 3 chr3 195002830 195003120 -32521458 - AluSx SINE Alu -2 310 22 2184 100 10 13 chr3 195003687 195003988 -32520590 + AluSp SINE Alu 1 300 -13 1123 310 109 0 chr3 195005199 195005648 -32518930 + HAL1 LINE L1 4 501 -2006 1206 197 155 60 chr3 195005658 195006049 -32518529 - MLT1G3 LTR MaLR 0 530 115 6632 57 5 7 chr3 195006756 195007580 -32516998 - L1PA7 LINE L1 0 6154 5333 2254 95 7 0 chr3 195008148 195008443 -32516135 - AluY SINE Alu -14 297 1 22 56 0 0 chr3 195008445 195008481 -32516097 + AT_rich Low_complexity Low_complexity 1 36 0 2048 104 42 36 chr3 195008629 195008960 -32515618 - AluSx SINE Alu 0 333 1 1241 151 4 27 chr3 195009177 195009402 -32515176 + AluJb SINE Alu 93 312 0 323 317 92 12 chr3 195009955 195010119 -32514459 + L2 LINE L2 3091 3267 -5 229 203 17 17 chr3 195010740 195010799 -32513779 - MIR SINE MIR -10 252 194 1808 178 3 7 chr3 195010899 195011208 -32513370 + AluJb SINE Alu 1 308 -4 3963 112 26 3 chr3 195011938 195012518 -32512060 + Tigger1 DNA MER2_type 713 1305 -1113 345 204 0 0 chr3 195012515 195012569 -32512009 + Tigger1 DNA MER2_type 2363 2416 -2 * 2530 134 36 67 chr3 195013819 195014265 -32510313 + MSTB1 LTR MaLR 1 432 0 340 179 0 0 chr3 195014765 195014821 -32509757 - L2 LINE L2 -13 3300 3245 678 271 61 0 chr3 195015129 195015310 -32509268 - MIR SINE MIR -20 242 51 825 316 25 0 chr3 195015963 195016207 -32508371 + MIR SINE MIR 13 262 0 271 262 83 60 chr3 195016874 195017042 -32507536 + MIR SINE MIR 47 218 -44 457 296 66 33 chr3 195017190 195017403 -32507175 + MIR SINE MIR 40 259 -3 2551 98 48 28 chr3 195017860 195018217 -32506361 - THE1B LTR MaLR 0 364 1 228 227 0 0 chr3 195018696 195018740 -32505838 + (CA)n Simple_repeat Simple_repeat 1 44 0 210 208 0 0 chr3 195018817 195018865 -32505713 + CT-rich Low_complexity Low_complexity 4 51 0 459 0 0 0 chr3 195019499 195019550 -32505028 + (CA)n Simple_repeat Simple_repeat 1 51 0 415 312 101 20 chr3 195020788 195020987 -32503591 + MIR SINE MIR 33 247 -15 1750 269 105 38 chr3 195021068 195021916 -32502662 + HsTC2b DNA Tc2 11 915 0 180 229 0 0 chr3 195022029 195022064 -32502514 - L3 LINE CR1 -5 1572 1538 5977 122 19 13 chr3 195022076 195023775 -32500803 + L1MA3 LINE L1 4440 6148 -157 843 154 0 0 chr3 195023776 195023893 -32500685 + FLAM_C SINE Alu 2 118 -25 1031 106 99 0 chr3 195023893 195024054 -32500524 + L1MA3 LINE L1 6127 6303 -2 2214 85 20 7 chr3 195025270 195025575 -32499003 + AluY SINE Alu 1 309 -2 180 241 85 99 chr3 195025919 195026060 -32498518 - MIR SINE MIR 0 262 124 461 219 0 41 chr3 195026419 195026542 -32498036 - LTR33 LTR ERVL -2 519 402 279 219 85 0 chr3 195026568 195026650 -32497928 - LTR33 LTR ERVL -429 92 4 402 329 57 5 chr3 195027263 195027446 -32497132 + MIR SINE MIR 5 192 -63 2143 90 0 43 chr3 195028441 195028740 -32495838 + AluY SINE Alu 1 286 -25 5466 252 118 30 chr3 195028867 195031207 -32493371 + L2 LINE L2 753 3302 -11 207 69 0 0 chr3 195031207 195031236 -32493342 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 5466 252 118 30 chr3 195031236 195031249 -32493329 + L2 LINE L2 3302 3312 -1 515 286 80 36 chr3 195031426 195031650 -32492928 - MIR SINE MIR -9 253 20 204 125 0 0 chr3 195032324 195032356 -32492222 + (T)n Simple_repeat Simple_repeat 1 32 0 499 238 38 70 chr3 195032416 195032601 -32491977 - MLT1I LTR MaLR -33 376 198 402 345 97 29 chr3 195032830 195033068 -32491510 + L2 LINE L2 2832 3085 -187 1731 128 4 23 chr3 195033183 195033449 -32491129 + AluSx SINE Alu 39 299 -13 239 318 10 42 chr3 195033954 195034076 -32490502 + MIR SINE MIR 4 120 -102 1921 177 19 42 chr3 195034816 195035240 -32489338 - MLT2D LTR ERVL 0 414 1 300 343 151 14 chr3 195035278 195035424 -32489154 - MIR3 SINE MIR -6 202 37 21 0 0 0 chr3 195035453 195035474 -32489104 + AT_rich Low_complexity Low_complexity 1 21 0 479 233 41 0 chr3 195035594 195035740 -32488838 + L1M4c LINE L1 2030 2181 -4203 1203 182 42 102 chr3 195035824 195036274 -32488304 + LTR37A LTR ERV1 4 426 0 678 277 109 4 chr3 195037394 195037650 -32486928 - MLT1J1 LTR MaLR -30 416 134 201 260 0 27 chr3 195037806 195037879 -32486699 + GA-rich Low_complexity Low_complexity 3 73 0 8666 153 19 33 chr3 195037888 195039508 -32485070 + L1MA4A LINE L1 3463 5033 -1270 1875 56 26 0 chr3 195039508 195039740 -32484838 - AluY SINE Alu 0 311 74 8666 153 19 33 chr3 195039740 195040985 -32483593 + L1MA4A LINE L1 5033 6294 -9 467 271 93 0 chr3 195041080 195041209 -32483369 + MER91A DNA MER1_type 2 142 -54 265 203 54 54 chr3 195041252 195041326 -32483252 + MER91A DNA MER1_type 123 196 0 252 354 35 0 chr3 195041520 195041633 -32482945 + MIR3 SINE MIR 92 208 0 195 100 0 0 chr3 195041894 195041924 -32482654 + (CA)n Simple_repeat Simple_repeat 1 30 0 387 238 40 0 chr3 195042680 195042781 -32481797 - MIR SINE MIR -56 206 102 1930 173 5 41 chr3 195042787 195043180 -32481398 - MLT1B LTR MaLR -11 379 1 2483 260 63 7 chr3 195044886 195045645 -32478933 - L1MEc LINE L1 -5571 825 24 1464 163 96 0 chr3 195045666 195045967 -32478611 - L1MA6 LINE L1 -12 6288 5959 933 135 0 0 chr3 195045968 195046101 -32478477 - FRAM SINE Alu -5 171 39 1435 122 0 34 chr3 195046101 195046127 -32478451 - L1MA6 LINE L1 -332 5968 5943 2127 124 0 3 chr3 195046127 195046417 -32478161 - AluSx SINE Alu -23 289 1 1435 122 0 34 chr3 195046417 195046652 -32477926 - L1MA6 LINE L1 -357 5943 5716 2165 101 70 14 chr3 195046754 195047109 -32477469 - THE1C LTR MaLR 0 375 1 192 279 66 16 chr3 195047261 195047322 -32477256 + MIR SINE MIR 38 101 -107 22 80 0 0 chr3 195047440 195047490 -32477088 + AT_rich Low_complexity Low_complexity 1 50 0 328 158 79 61 chr3 195048054 195048168 -32476410 - MER117 DNA MER1_type -78 119 4 278 237 172 0 chr3 195048193 195048286 -32476292 + L2 LINE L2 711 819 -2495 3031 117 19 2 chr3 195048635 195049113 -32475465 + LOR1a LTR ERV1 12 497 0 254 357 76 32 chr3 195049137 195049322 -32475256 + L2 LINE L2 1218 1410 -1904 379 280 126 19 chr3 195050138 195050345 -32474233 - L1ME3 LINE L1 0 6162 5934 2197 111 0 3 chr3 195050413 195050710 -32473868 - AluSx SINE Alu -16 296 1 1629 267 48 14 chr3 195050743 195051566 -32473012 - L1ME3 LINE L1 -273 5897 5046 235 358 42 0 chr3 195051811 195051906 -32472672 - L2 LINE L2 -17 3255 3157 180 298 38 94 chr3 195052039 195052274 -32472304 + L2 LINE L2 2455 2676 -638 321 362 0 0 chr3 195052872 195052988 -32471590 + L2 LINE L2 2931 3046 -226 223 313 52 31 chr3 195053115 195053211 -32471367 + L2 LINE L2 3169 3266 -6 548 311 55 25 chr3 195053898 195054136 -32470442 - MIR SINE MIR -9 253 9 347 242 147 0 chr3 195055137 195055232 -32469346 + L2 LINE L2 3163 3271 -1 230 206 14 0 chr3 195056445 195056518 -32468060 + (TA)n Simple_repeat Simple_repeat 2 75 0 1723 214 77 7 chr3 195057035 195057465 -32467113 + MLT1C LTR MaLR 4 463 -4 219 264 0 42 chr3 195057487 195057559 -32467019 - MIR SINE MIR 0 262 194 202 294 0 0 chr3 195057787 195057838 -32466740 + MIR3 SINE MIR 153 203 -5 538 116 0 0 chr3 195058564 195058650 -32465928 - L1MA2 LINE L1 -4 6300 6215 802 150 38 0 chr3 195058670 195058803 -32465775 + AluSg/x SINE Alu 167 304 -6 234 254 36 0 chr3 195058810 195058879 -32465699 - MIR3 SINE MIR -38 170 110 985 135 0 107 chr3 195059023 195059201 -32465377 - AluSx SINE Alu -153 159 1 1392 213 105 14 chr3 195059201 195059379 -32465199 - LTR54B LTR ERV1 -21 477 317 2147 105 25 0 chr3 195059379 195059664 -32464914 + AluSq SINE Alu 1 292 -21 1392 213 105 14 chr3 195059664 195059922 -32464656 - LTR54B LTR ERV1 -181 317 1 2080 102 15 30 chr3 195059946 195060341 -32464237 + L1PB1 LINE L1 5820 6209 0 412 266 218 32 chr3 195060585 195060901 -32463677 - L1ME4a LINE L1 -5 6116 5742 2381 70 3 3 chr3 195061602 195061902 -32462676 - AluSc SINE Alu -9 300 1 735 258 69 5 chr3 195062426 195062643 -32461935 - MIR SINE MIR -30 232 2 393 247 89 57 chr3 195062649 195062807 -32461771 - MIR SINE MIR -37 225 63 239 325 0 0 chr3 195064581 195064661 -32459917 + CT-rich Low_complexity Low_complexity 3 82 0 848 314 58 4 chr3 195065411 195065653 -32458925 - MIR SINE MIR 0 262 8 188 353 0 0 chr3 195066063 195066114 -32458464 - L2 LINE L2 -12 3260 3210 323 249 127 37 chr3 195066158 195066344 -32458234 + MIR SINE MIR 6 253 -9 282 216 23 80 chr3 195066681 195066769 -32457809 - MER5B DNA MER1_type -95 83 1 333 307 94 0 chr3 195066793 195066920 -32457658 + MIR SINE MIR 65 203 -59 1056 226 55 13 chr3 195066968 195067072 -32457506 - L1ME1 LINE L1 -4 6162 6064 4713 184 44 37 chr3 195067072 195067383 -32457195 - Tigger6a DNA MER2_type -515 1082 775 2059 111 3 27 chr3 195067383 195067681 -32456897 - AluSx SINE Alu -19 293 3 4713 184 44 37 chr3 195067681 195068444 -32456134 - Tigger6a DNA MER2_type -822 775 1 1056 226 55 13 chr3 195068444 195068504 -32456074 - L1ME1 LINE L1 -102 6064 4627 253 297 86 29 chr3 195068504 195068679 -32455899 - L1MA7 LINE L1 -293 5998 5814 3789 163 30 4 chr3 195069395 195070107 -32454471 - L1MB3 LINE L1 -4 6179 5450 223 281 0 16 chr3 195070322 195070386 -32454192 - L2 LINE L2 -7 3265 3203 1182 265 111 41 chr3 195070634 195071095 -32453483 - MLT1K LTR MaLR -82 506 14 335 298 50 40 chr3 195071998 195072164 -32452414 + MIR SINE MIR 16 180 -65 454 306 37 4 chr3 195072569 195072741 -32451837 + MIR SINE MIR 73 250 -12 535 308 87 0 chr3 195073603 195073775 -32450803 + MIR3 SINE MIR 16 202 -6 2419 93 0 0 chr3 195075148 195075458 -32449120 - AluY SINE Alu -1 310 1 2244 95 30 13 chr3 195075490 195075794 -32448784 - AluSc SINE Alu 0 309 1 240 323 35 6 chr3 195076151 195076277 -32448301 + MIR SINE MIR 15 147 -61 475 283 18 73 chr3 195076460 195076679 -32447899 + MLT1J LTR MaLR 257 463 -48 363 327 74 31 chr3 195077842 195078004 -32446574 - L2 LINE L2 -2 3270 3102 551 283 113 9 chr3 195078815 195079045 -32445533 + MIR SINE MIR 7 260 -2 641 316 101 16 chr3 195079663 195080219 -32444359 - L1ME1 LINE L1 -310 5860 5258 388 167 0 28 chr3 195080296 195080404 -32444174 + CT-rich Low_complexity Low_complexity 2 180 0 1759 155 44 10 chr3 195080404 195080676 -32443902 - AluJb SINE Alu 0 390 1 503 220 80 72 chr3 195080749 195080929 -32443649 - L1ME3A LINE L1 -12 6158 5974 2252 206 45 66 chr3 195080929 195081507 -32443071 - MLT1F1 LTR MaLR 0 567 2 503 220 80 72 chr3 195081507 195081576 -32443002 - L1ME3A LINE L1 -196 5974 5907 2372 91 0 10 chr3 195081576 195081883 -32442695 - AluY SINE Alu -7 304 1 283 307 0 23 chr3 195082019 195082107 -32442471 - L2 LINE L2 -704 2610 2525 1240 183 14 9 chr3 195082297 195082516 -32442062 + AluJb SINE Alu 1 220 -92 246 262 118 37 chr3 195082657 195082844 -32441734 - L1ME1 LINE L1 -2196 3950 3749 1302 301 27 17 chr3 195082913 195083322 -32441256 + LTR16C LTR ERVL 79 491 0 384 342 28 38 chr3 195083322 195083736 -32440842 - L1ME1 LINE L1 -2394 3752 3341 560 278 24 24 chr3 195083736 195083945 -32440633 - MER63A DNA MER1_type -1 209 1 384 342 28 38 chr3 195083945 195083957 -32440621 - L1ME1 LINE L1 -2805 3341 3330 1793 244 78 85 chr3 195083957 195084412 -32440166 + L2 LINE L2 2054 2510 -803 2466 77 0 13 chr3 195084412 195084724 -32439854 + AluY SINE Alu 1 308 -3 1793 244 78 85 chr3 195084724 195084927 -32439651 + L2 LINE L2 2510 2713 -600 1761 155 0 67 chr3 195084927 195085243 -32439335 - AluJb SINE Alu -17 295 1 1793 244 78 85 chr3 195085243 195085280 -32439298 + L2 LINE L2 2713 2749 -564 2197 126 3 10 chr3 195085280 195085589 -32438989 - AluSx SINE Alu -5 307 1 1793 244 78 85 chr3 195085589 195085872 -32438706 + L2 LINE L2 2749 3009 -304 342 246 49 33 chr3 195085894 195086016 -32438562 + L2 LINE L2 3168 3291 -22 704 267 114 47 chr3 195087747 195088107 -32436471 + MLT1J2 LTR MaLR 67 450 0 30 0 0 0 chr3 195089494 195089524 -32435054 + AT_rich Low_complexity Low_complexity 1 30 0 31520 100 10 28 chr3 195089588 195090777 -32433801 - L1PA7 LINE L1 -3 6466 5257 2511 63 0 38 chr3 195090777 195091095 -32433483 + AluY SINE Alu 1 306 -5 31520 100 10 28 chr3 195091095 195096180 -32428398 - L1PA7 LINE L1 -1212 5257 213 2506 80 0 0 chr3 195096360 195096661 -32427917 + AluSc SINE Alu 1 301 -8 1067 268 101 3 chr3 195096661 195096967 -32427611 + MLT1I LTR MaLR 74 409 0 1172 124 22 0 chr3 195097663 195097841 -32426737 + AluSq SINE Alu 121 302 -11 2110 122 9 118 chr3 195099582 195099638 -32424940 + MLT1B LTR MaLR 4 64 -326 2329 116 121 16 chr3 195099638 195100025 -32424553 + MSTA LTR MaLR 1 428 0 2110 122 9 118 chr3 195100025 195100238 -32424340 + MLT1B LTR MaLR 64 211 -179 1917 126 60 7 chr3 195100238 195100523 -32424055 + AluSx SINE Alu 1 300 -12 2110 122 9 118 chr3 195100523 195100686 -32423892 + MLT1B LTR MaLR 211 390 0 1443 139 8 13 chr3 195100848 195101085 -32423493 - AluSg/x SINE Alu -10 300 65 2141 126 3 3 chr3 195101203 195101505 -32423073 - AluSx SINE Alu -10 302 1 270 209 82 55 chr3 195101583 195101693 -32422885 - HAL1 LINE L1 -15 2492 2380 206 280 24 32 chr3 195101743 195101803 -32422775 + (TATATG)n Simple_repeat Simple_repeat 2 61 -64 2059 155 0 0 chr3 195101803 195102106 -32422472 + AluSx SINE Alu 1 303 -9 206 280 24 32 chr3 195102106 195102170 -32422408 + (TATATG)n Simple_repeat Simple_repeat 61 125 0 2303 115 0 0 chr3 195102981 195103277 -32421301 + AluSx SINE Alu 1 296 -16 759 298 166 20 chr3 195103652 195104676 -32419902 - L2 LINE L2 0 3313 2133 234 313 102 7 chr3 195105618 195105765 -32418813 - MIR3 SINE MIR -7 201 41 676 182 0 45 chr3 195105933 195106065 -32418513 + AluJo SINE Alu 10 135 -177 254 254 0 0 chr3 195106104 195106167 -32418411 - L1ME4a LINE L1 -113 6008 5946 484 252 39 58 chr3 195106216 195106422 -32418156 - L1ME4a LINE L1 -301 5820 5619 294 345 36 14 chr3 195106658 195106797 -32417781 + L2 LINE L2 3172 3313 0 2189 127 0 16 chr3 195106853 195107169 -32417409 - AluSx SINE Alu 0 312 2 23 0 0 0 chr3 195107847 195107870 -32416708 + AT_rich Low_complexity Low_complexity 1 23 0 817 271 181 16 chr3 195108283 195108730 -32415848 + LTR33 LTR ERVL 1 521 0 2252 118 3 0 chr3 195108944 195109250 -32415328 + AluSg SINE Alu 1 307 -3 651 186 25 0 chr3 195111272 195111390 -32413188 + MER20 DNA MER1_type 1 121 -98 407 189 18 63 chr3 195111548 195111659 -32412919 - MER20 DNA MER1_type 0 219 114 184 265 20 0 chr3 195111659 195111708 -32412870 + MIR SINE MIR 96 145 -63 676 274 63 39 chr3 195111712 195111997 -32412581 - L2 LINE L2 -2 3311 3020 261 0 0 0 chr3 195112356 195112385 -32412193 + (CA)n Simple_repeat Simple_repeat 2 30 0 192 278 100 22 chr3 195116864 195116954 -32407624 + MIR SINE MIR 37 133 -75 2186 96 7 0 chr3 195117013 195117306 -32407272 - AluY SINE Alu -16 295 1 354 45 0 0 chr3 195117407 195117451 -32407127 + (CA)n Simple_repeat Simple_repeat 2 45 0 827 287 91 10 chr3 195117451 195117758 -32406820 - L1MC4a LINE L1 -1863 5945 5614 333 319 18 0 chr3 195117790 195117903 -32406675 + MIR3 SINE MIR 73 187 -21 261 297 10 30 chr3 195118508 195118609 -32405969 - MIR3 SINE MIR -8 200 102 2000 123 76 25 chr3 195118927 195119284 -32405294 + THE1C LTR MaLR 1 375 0 30466 124 8 59 chr3 195119736 195126239 -32398339 - L1PA8 LINE L1 -6 6166 2 184 284 108 0 chr3 195126242 195126316 -32398262 - MER5B DNA MER1_type -37 141 60 294 234 31 62 chr3 195126612 195126740 -32397838 + L2 LINE L2 3180 3303 -10 270 0 0 0 chr3 195126799 195126829 -32397749 + (CAAT)n Simple_repeat Simple_repeat 4 33 0 1102 189 4 44 chr3 195126905 195127133 -32397445 - MER20 DNA MER1_type 0 219 1 405 0 0 0 chr3 195127197 195127242 -32397336 + (TG)n Simple_repeat Simple_repeat 1 45 0 719 274 43 14 chr3 195127530 195127738 -32396840 + MIR SINE MIR 14 227 -35 1508 137 96 0 chr3 195127939 195128232 -32396346 - MER33 DNA MER1_type -3 321 1 229 181 0 56 chr3 195128357 195128429 -32396149 + CT-rich Low_complexity Low_complexity 4 71 0 633 250 58 0 chr3 195129473 195129661 -32394917 - MIR SINE MIR -24 238 40 250 284 15 0 chr3 195129731 195129798 -32394780 + L2 LINE L2 3195 3262 -51 864 260 47 35 chr3 195131797 195132051 -32392527 - MIR SINE MIR 0 262 6 1477 186 71 28 chr3 195132393 195132715 -32391863 - MLT1C LTR MaLR 0 467 132 683 192 14 103 chr3 195132719 195132933 -32391645 - MLT1C LTR MaLR -267 200 6 182 273 50 30 chr3 195133245 195133344 -32391234 + MER5B DNA MER1_type 1 101 -77 306 263 7 102 chr3 195133562 195133612 -32390966 + MIR SINE MIR 108 161 -101 1919 147 31 0 chr3 195133612 195133898 -32390680 - AluJb SINE Alu -17 295 1 306 263 7 102 chr3 195133898 195133984 -32390594 + MIR SINE MIR 161 231 -31 1363 211 94 11 chr3 195134644 195135004 -32389574 - MLT1B LTR MaLR 0 390 1 358 304 56 0 chr3 195135278 195135403 -32389175 + MER5B DNA MER1_type 3 134 -44 2657 181 13 19 chr3 195135772 195136297 -32388281 - L1MB5 LINE L1 -13 6161 5640 273 271 36 95 chr3 195136309 195136343 -32388235 - MIR SINE MIR -63 145 111 2778 90 2 20 chr3 195136343 195136743 -32387835 + L1PB2 LINE L1 5759 6151 0 273 271 36 95 chr3 195136743 195136855 -32387723 - MIR SINE MIR -97 111 5 10205 53 26 1 chr3 195137015 195139096 -32385482 - L1PA4 LINE L1 0 6155 4042 1289 121 30 5 chr3 195189346 195189544 -32335034 + AluSg/x SINE Alu 95 297 -15 2062 131 67 3 chr3 195189823 195190152 -32334426 + L1PA16 LINE L1 5808 6157 -9 1536 138 18 32 chr3 195191083 195191366 -32333212 - AluJb SINE Alu -19 293 15 229 222 37 0 chr3 195191512 195191566 -32333012 + MER4D LTR ERV1 62 117 -786 744 265 60 12 chr3 195192418 195192667 -32331911 - LTR37B LTR ERV1 -10 458 198 1868 122 27 0 chr3 195192954 195193216 -32331362 - AluSx SINE Alu -15 297 29 309 118 0 0 chr3 195193228 195193279 -32331299 + (T)n Simple_repeat Simple_repeat 1 51 0 228 250 194 9 chr3 195194483 195194591 -32329987 - L2 LINE L2 -4 3309 3182 257 269 67 50 chr3 195194719 195194838 -32329740 - L2 LINE L2 -345 2927 2807 220 248 147 37 chr3 195194868 195194977 -32329601 - L2 LINE L2 -626 2688 2568 287 109 43 0 chr3 195195975 195196021 -32328557 - AluSx SINE Alu -11 289 242 1213 150 16 5 chr3 195196021 195196208 -32328370 - AluSx SINE Alu -123 189 1 219 365 153 25 chr3 195197006 195197327 -32327251 - L2 LINE L2 -1 3271 2910 2033 134 7 10 chr3 195197510 195197815 -32326763 - AluSq SINE Alu -9 304 1 564 223 40 5 chr3 195197815 195197972 -32326606 - MIR SINE MIR -44 218 60 1349 244 97 52 chr3 195198449 195198912 -32325666 - L2 LINE L2 -12 3301 2818 579 216 86 0 chr3 195198958 195199097 -32325481 - MLT1F LTR MaLR -29 538 388 546 231 203 0 chr3 195199112 195199255 -32325323 + MER58A DNA MER1_type 40 211 -13 1083 195 170 68 chr3 195199255 195199578 -32325000 - MLT1F LTR MaLR -185 357 2 322 237 46 99 chr3 195199581 195199712 -32324866 - L2 LINE L2 -492 2822 2699 21 36 0 0 chr3 195199922 195199950 -32324628 + AT_rich Low_complexity Low_complexity 1 28 0 1772 205 66 127 chr3 195199986 195200310 -32324268 - L1MC5 LINE L1 -144 7817 7475 328 58 39 0 chr3 195200310 195200362 -32324216 + Alu SINE Alu 249 302 0 1772 205 66 127 chr3 195200362 195200898 -32323680 - L1MC5 LINE L1 -486 7475 6962 8716 49 7 4 chr3 195201002 195202006 -32322572 - LTR13 LTR ERVK 0 1007 1 6799 222 4 11 chr3 195202006 195203393 -32321185 - HERVK13 LTR ERVK 0 8116 6740 579 276 110 73 chr3 195203393 195203589 -32320989 - L1MC5 LINE L1 -901 6907 6720 2151 121 3 6 chr3 195203589 195203902 -32320676 - AluSx SINE Alu 0 312 1 579 276 110 73 chr3 195203902 195204510 -32320068 - L1MC5 LINE L1 -1088 6720 6091 2242 122 0 0 chr3 195204512 195204816 -32319762 - AluSg SINE Alu -6 304 1 935 244 78 53 chr3 195204848 195205205 -32319373 - L1MC5 LINE L1 -2188 5620 5255 1445 192 55 20 chr3 195205278 195205570 -32319008 - AluJo SINE Alu -10 302 1 411 316 105 36 chr3 195205575 195205879 -32318699 - L1MC5 LINE L1 -922 5224 4900 305 248 79 0 chr3 195206068 195206169 -32318409 - MIR SINE MIR -71 191 83 397 189 22 33 chr3 195206239 195206329 -32318249 + MIR3 SINE MIR 66 154 -54 1936 77 4 4 chr3 195206557 195206804 -32317774 - AluSc SINE Alu -3 306 60 23 0 0 0 chr3 195207643 195207666 -32316912 + GC_rich Low_complexity Low_complexity 1 23 0 25 0 0 0 chr3 195207935 195207960 -32316618 + AT_rich Low_complexity Low_complexity 1 25 0 717 160 0 0 chr3 195207960 195208066 -32316512 - AluSq/x SINE Alu -180 133 28 356 174 33 109 chr3 195208068 195208160 -32316418 - L1PA12 LINE L1 -7099 482 398 * 969 211 11 37 chr3 195208155 195208425 -32316153 + L1PA15-16 LINE L1 2585 2847 -4002 2267 158 28 3 chr3 195208425 195208779 -32315799 + THE1B LTR MaLR 1 363 -1 2980 142 12 71 chr3 195208780 195209371 -32315207 + THE1B-int LTR MaLR 1 556 -1024 188 184 20 0 chr3 195209635 195209684 -32314894 + CT-rich Low_complexity Low_complexity 2 51 0 219 36 0 0 chr3 195210433 195210461 -32314117 + (TTTG)n Simple_repeat Simple_repeat 1 28 0 475 189 84 0 chr3 195210522 195210617 -32313961 - AluSg SINE Alu -207 103 1 207 244 0 0 chr3 195210823 195210868 -32313710 + CT-rich Low_complexity Low_complexity 2 46 0 241 309 36 65 chr3 195211057 195211196 -32313382 + L1M4 LINE L1 3715 3849 -2297 363 23 0 0 chr3 195211455 195211499 -32313079 + (CA)n Simple_repeat Simple_repeat 1 44 0 243 220 0 17 chr3 195211556 195211615 -32312963 + tRNA-Lys-AAA tRNA tRNA 6 63 -13 216 0 0 0 chr3 195211724 195211748 -32312830 + (A)n Simple_repeat Simple_repeat 1 24 0 317 24 24 0 chr3 195211844 195211886 -32312692 + (TAAA)n Simple_repeat Simple_repeat 4 46 0 24 0 0 0 chr3 195213336 195213360 -32311218 + AT_rich Low_complexity Low_complexity 1 24 0 248 250 47 0 chr3 195214113 195214177 -32310401 + CT-rich Low_complexity Low_complexity 1 67 0 341 194 98 9 chr3 195215283 195215391 -32309187 + MIR SINE MIR 49 164 -63 21 0 0 0 chr3 195215742 195215763 -32308815 + AT_rich Low_complexity Low_complexity 1 21 0 28 61 0 0 chr3 195215996 195216045 -32308533 + AT_rich Low_complexity Low_complexity 1 49 0 241 250 0 0 chr3 195218386 195218438 -32306140 + CT-rich Low_complexity Low_complexity 2 53 0 535 270 84 75 chr3 195219260 195219398 -32305180 + L1MEd LINE L1 796 931 -5379 2207 123 3 3 chr3 195219398 195219707 -32304871 + AluSx SINE Alu 1 309 -3 535 270 84 75 chr3 195219707 195220428 -32304150 + L1MEd LINE L1 931 1731 -4579 592 191 8 8 chr3 195220519 195220650 -32303928 + L1ME3A LINE L1 6034 6164 -6 * 613 256 43 50 chr3 195220640 195220898 -32303680 + L1MEd LINE L1 3310 3565 -2564 366 263 67 24 chr3 195221371 195221502 -32303076 + L1MEd LINE L1 3559 3712 -2417 227 79 26 0 chr3 195221502 195221540 -32303038 + (TA)n Simple_repeat Simple_repeat 2 40 0 366 263 67 24 chr3 195221540 195221613 -32302965 + L1MEd LINE L1 3712 3780 -2349 2247 83 0 0 chr3 195221962 195222240 -32302338 - AluSg SINE Alu 0 310 33 2053 93 28 14 chr3 195223028 195223317 -32301261 - AluSx SINE Alu -14 298 6 206 79 0 53 chr3 195223482 195223520 -32301058 + (TCTA)n Simple_repeat Simple_repeat 2 37 0 232 201 94 126 chr3 195223583 195223742 -32300836 - L1MC4 LINE L1 -1 8041 7888 284 269 25 14 chr3 195223753 195223891 -32300687 - L1 LINE L1 -1061 5085 4942 912 153 177 14 chr3 195224077 195224286 -32300292 + MER4C LTR ERV1 1 243 -222 43663 33 22 2 chr3 195224291 195230317 -32294261 - L1PA2 LINE L1 -2 6153 3 948 300 141 10 chr3 195230334 195231105 -32293473 - L1 LINE L1 -1252 4894 4023 192 245 0 0 chr3 195231126 195231179 -32293399 + (CATATA)n Simple_repeat Simple_repeat 6 58 0 1352 169 79 21 chr3 195231332 195231622 -32292956 - AluJo SINE Alu -5 307 1 314 343 15 7 chr3 195231699 195231836 -32292742 - L1 LINE L1 -2282 3864 3727 645 292 155 52 chr3 195231845 195232755 -32291823 - L1 LINE L1 -2457 3689 2686 24 67 0 0 chr3 195233913 195233958 -32290620 + AT_rich Low_complexity Low_complexity 1 45 0 207 0 0 0 chr3 195234778 195234801 -32289777 + (T)n Simple_repeat Simple_repeat 1 23 0 2320 99 0 7 chr3 195237874 195238178 -32286400 + AluSx SINE Alu 1 302 -10 25 51 0 0 chr3 195238896 195238935 -32285643 + AT_rich Low_complexity Low_complexity 1 39 0 2193 92 10 3 chr3 195239480 195239775 -32284803 + AluSx SINE Alu 1 297 -15 25 0 0 0 chr3 195240290 195240315 -32284263 + AT_rich Low_complexity Low_complexity 1 25 0 2564 66 0 0 chr3 195240474 195240777 -32283801 + AluY SINE Alu 1 303 -8 258 253 101 0 chr3 195240884 195240963 -32283615 - L1MC/D LINE L1 -2017 5791 5705 189 0 0 0 chr3 195241016 195241037 -32283541 + (CAA)n Simple_repeat Simple_repeat 1 21 0 668 207 8 8 chr3 195241582 195241703 -32282875 - FLAM_A SINE Alu -12 121 1 1630 165 70 14 chr3 195242101 195242446 -32282132 + THE1B LTR MaLR 1 364 0 10090 118 18 34 chr3 195242448 195244052 -32280526 + THE1C-int LTR MaLR 3 1580 0 1925 150 52 27 chr3 195244052 195244418 -32280160 + THE1C LTR MaLR 1 375 0 736 175 65 149 chr3 195244433 195244942 -32279636 - L1MC4 LINE L1 -3 8039 7574 1034 172 8 123 chr3 195244947 195245215 -32279363 - AluJb SINE Alu -6 306 70 1014 173 62 9 chr3 195245224 195245450 -32279128 - L1MC4 LINE L1 -502 7540 7303 2197 128 13 0 chr3 195245818 195246122 -32278456 + AluSx SINE Alu 1 308 -4 1420 201 60 111 chr3 195246135 195246903 -32277675 + L1MC5 LINE L1 6717 7445 -516 284 247 41 0 chr3 195246930 195247003 -32277575 + L1MC5 LINE L1 7812 7887 -74 850 129 6 90 chr3 195247288 195247466 -32277112 - AluSg/x SINE Alu -12 298 136 827 305 37 20 chr3 195247662 195248010 -32276568 + ERVL LTR ERVL 3368 3721 -2043 1450 113 0 0 chr3 195248127 195248322 -32276256 - AluSc SINE Alu -6 303 109 2364 81 7 3 chr3 195248336 195248633 -32275945 - AluSc SINE Alu -11 298 1 932 266 81 43 chr3 195248670 195249156 -32275422 + ERVL LTR ERVL 4152 4699 -847 1159 166 0 42 chr3 195250230 195250447 -32274131 - AluJb SINE Alu -20 292 85 684 263 111 14 chr3 195250521 195250738 -32273840 - MIR SINE MIR -16 246 9 1027 170 101 12 chr3 195250756 195251003 -32273575 + MER96B DNA MER1_type? 2 270 -147 238 148 0 148 chr3 195250994 195251055 -32273523 - MER96B DNA MER1_type? -363 54 3 * 241 146 0 0 chr3 195251328 195251369 -32273209 - L2 LINE L2 -4 3309 3269 471 223 45 18 chr3 195251509 195251621 -32272957 - MIR SINE MIR -111 151 37 341 279 158 71 chr3 195253785 195254151 -32270427 + L1M2 LINE L1 1007 1404 -5445 186 143 0 0 chr3 195254325 195254360 -32270218 + (CGG)n Simple_repeat Simple_repeat 3 37 0 1721 146 0 4 chr3 195255569 195255837 -32268741 + AluJb SINE Alu 9 275 -37 436 246 63 8 chr3 195256094 195256220 -32268358 - L1ME1 LINE L1 -62 6104 5972 515 255 83 0 chr3 195256229 195256374 -32268204 - MIR SINE MIR -104 158 2 2636 203 62 3 chr3 195256448 195257028 -32267550 + MER82 DNA MER2_type 39 652 -1 316 367 50 47 chr3 195257052 195257202 -32267376 - L2 LINE L2 -61 3211 3058 1268 181 77 0 chr3 195257202 195257501 -32267077 - MER33 DNA MER1_type -2 322 1 316 367 50 47 chr3 195257501 195257628 -32266950 - L2 LINE L2 -214 3058 2933 2144 103 0 60 chr3 195257770 195258101 -32266477 - AluY SINE Alu 0 311 1 25 0 0 0 chr3 195258101 195258126 -32266452 + AT_rich Low_complexity Low_complexity 1 25 0 328 325 201 18 chr3 195258305 195258644 -32265934 - L2 LINE L2 -825 2489 2089 3834 98 19 117 chr3 195258972 195259115 -32265463 - MER4A LTR ERV1 0 664 509 2473 54 0 3 chr3 195259115 195259411 -32265167 - AluY SINE Alu -16 295 1 3834 98 19 117 chr3 195259411 195260003 -32264575 - MER4A LTR ERV1 -155 509 1 288 221 0 0 chr3 195261023 195261091 -32263487 - LTR67 LTR ERVL -3 554 487 1314 178 111 35 chr3 195261473 195261871 -32262707 + MSTC LTR MaLR 1 428 0 1364 251 52 33 chr3 195262179 195262780 -32261798 + L1MEc LINE L1 1746 2357 -4039 972 174 0 0 chr3 195262870 195263025 -32261553 - AluSg/x SINE Alu -27 283 129 279 0 0 0 chr3 195263025 195263056 -32261522 + (TG)n Simple_repeat Simple_repeat 2 32 0 558 189 0 0 chr3 195263058 195263169 -32261409 + (CA)n Simple_repeat Simple_repeat 2 112 0 10925 99 37 3 chr3 195263304 195264831 -32259747 + THE1B-int LTR MaLR 1 1579 -1 2325 123 6 8 chr3 195264832 195265191 -32259387 + THE1B LTR MaLR 1 358 -6 14779 179 28 9 chr3 195265198 195267982 -32256596 + L1PA14 LINE L1 2141 4871 -1275 6587 80 28 62 chr3 195267982 195268384 -32256194 + SVA Other Other 1 1386 -991 6587 92 37 78 chr3 195268384 195269546 -32255032 + SVA Other Other 272 1386 0 14779 179 28 9 chr3 195269546 195269747 -32254831 + L1PA14 LINE L1 4871 5067 -1079 183 42 0 0 chr3 195269747 195269771 -32254807 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 14779 179 28 9 chr3 195269771 195269932 -32254646 + L1PA14 LINE L1 5067 5348 -798 311 43 0 22 chr3 195269932 195269978 -32254600 + (TTTTA)n Simple_repeat Simple_repeat 1 45 0 35425 39 3 0 chr3 195269978 195275288 -32249290 - L1PA3 LINE L1 -24 6131 809 5117 113 19 5 chr3 195275288 195276092 -32248486 + L1PA14 LINE L1 5337 6151 -10 3562 178 61 46 chr3 195276109 195276271 -32248307 + L1MB7 LINE L1 5151 5309 -875 1934 122 0 96 chr3 195276271 195276606 -32247972 + AluSx SINE Alu 1 303 -9 3562 178 61 46 chr3 195276606 195277445 -32247133 + L1MB7 LINE L1 5309 6182 -2 265 159 0 0 chr3 195277446 195277509 -32247069 + L1MB7 LINE L1 6122 6184 0 609 242 42 33 chr3 195277654 195277869 -32246709 + L1ME2 LINE L1 3850 4066 -2080 37226 70 2 4 chr3 195277935 195284096 -32240482 - L1PA5 LINE L1 0 6154 2 2109 131 0 3 chr3 195284125 195284423 -32240155 - AluSg SINE Alu -13 297 1 1208 219 58 134 chr3 195284423 195284548 -32240030 - MLT1E2 LTR MaLR -50 575 442 207 0 0 0 chr3 195284548 195284571 -32240007 + (TG)n Simple_repeat Simple_repeat 2 24 0 1208 219 58 134 chr3 195284571 195285066 -32239512 - MLT1E2 LTR MaLR -183 442 1 665 274 41 41 chr3 195285067 195285359 -32239219 + L1ME2 LINE L1 4063 4354 -1792 21 0 0 0 chr3 195285392 195285413 -32239165 + AT_rich Low_complexity Low_complexity 1 21 0 5571 158 22 55 chr3 195285629 195286892 -32237686 + L1MC3 LINE L1 5735 6955 -830 2124 194 111 50 chr3 195286899 195287631 -32236947 + L1ME2 LINE L1 5389 6164 0 2834 150 18 37 chr3 195287703 195287825 -32236753 - L1PB4 LINE L1 -3 6153 6030 2481 63 3 0 chr3 195287825 195288127 -32236451 - AluSp SINE Alu -10 303 1 2834 150 18 37 chr3 195288127 195288572 -32236006 - L1PB4 LINE L1 -126 6030 5597 1133 151 19 0 chr3 195288575 195288780 -32235798 - L1P5 LINE L1 -516 5640 5432 331 100 0 0 chr3 195288784 195288834 -32235744 - MLT2A2 LTR ERVL -2 451 402 311 154 0 103 chr3 195288835 195288952 -32235626 + (TA)n Simple_repeat Simple_repeat 2 106 0 2755 89 33 0 chr3 195288968 195289360 -32235218 - MLT2A2 LTR ERVL -47 406 2 8798 183 23 13 chr3 195289360 195291410 -32233168 - L1P5 LINE L1 -719 5435 3371 2411 127 17 7 chr3 195291415 195291834 -32232744 - Tigger1 DNA MER2_type -1648 770 348 314 97 89 16 chr3 195291834 195291958 -32232620 + GA-rich Low_complexity Low_complexity 3 135 0 563 219 8 8 chr3 195291958 195292086 -32232492 - Tigger1 DNA MER2_type -2054 364 237 4690 117 57 60 chr3 195292087 195293299 -32231279 + pTR5 LTR ERV1 743 2396 -210 2521 62 0 10 chr3 195293299 195293608 -32230970 + AluSp SINE Alu 1 306 -7 4690 117 57 60 chr3 195293608 195293819 -32230759 + pTR5 LTR ERV1 2396 2606 0 1257 149 4 29 chr3 195293819 195293860 -32230718 - Tigger1 DNA MER2_type -2179 239 199 2555 169 7 0 chr3 195293860 195294285 -32230293 - MSTC LTR MaLR 0 428 1 1257 149 4 29 chr3 195294285 195294484 -32230094 - Tigger1 DNA MER2_type -2219 199 5 1136 241 48 19 chr3 195294506 195294576 -32230002 - L1MEc LINE L1 -2382 3833 3766 969 121 216 5 chr3 195294576 195294766 -32229812 - MER30 DNA MER1_type 0 230 1 1136 241 48 19 chr3 195294766 195295114 -32229464 - L1MEc LINE L1 -2449 3766 3403 302 60 0 20 chr3 195295655 195295705 -32228873 + (TG)n Simple_repeat Simple_repeat 2 50 0 187 102 20 20 chr3 195295711 195295760 -32228818 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 225 94 0 0 chr3 195296419 195296451 -32228127 + (A)n Simple_repeat Simple_repeat 1 32 0 234 136 0 0 chr3 195297692 195297736 -32226842 + (TG)n Simple_repeat Simple_repeat 2 45 0 206 219 0 0 chr3 195299139 195299180 -32225398 + C-rich Low_complexity Low_complexity 1 41 0 2807 240 60 8 chr3 195299216 195300215 -32224363 - L1MEc LINE L1 -2799 3416 2366 1857 128 116 43 chr3 195300239 195300594 -32223984 + MSTA LTR MaLR 2 390 -38 6210 99 75 0 chr3 195300594 195301642 -32222936 - L1PA11 LINE L1 0 6174 5104 1857 128 116 43 chr3 195301642 195301684 -32222894 + MSTA LTR MaLR 390 428 0 333 195 35 0 chr3 195301697 195301784 -32222794 - L1MEc LINE L1 -3857 2358 2269 * 3713 150 46 34 chr3 195301776 195302538 -32222040 - L1MB3 LINE L1 -2 6181 5411 776 183 20 0 chr3 195302542 195302695 -32221883 + MSTD LTR MaLR 5 160 -236 1634 267 83 34 chr3 195302708 195303233 -32221345 - L1MEc LINE L1 -4238 2158 1660 1218 203 66 109 chr3 195303233 195303721 -32220857 + MLT1C LTR MaLR 1 467 0 1634 267 83 34 chr3 195303721 195304259 -32220319 - L1MEc LINE L1 -4736 1660 1043 2032 227 6 2 chr3 195304307 195304796 -32219782 - L1MEc LINE L1 -5456 940 450 538 167 0 19 chr3 195304813 195304921 -32219657 - L1PA7 LINE L1 -1 6153 6048 3742 158 25 14 chr3 195304921 195305418 -32219160 + L1M1 LINE L1 1968 2477 -5088 2131 126 0 3 chr3 195305418 195305720 -32218858 + AluSg SINE Alu 1 301 -9 3742 158 25 14 chr3 195305720 195305957 -32218621 + L1M1 LINE L1 2477 2710 -4855 636 249 24 109 chr3 195305961 195306254 -32218324 - L2 LINE L2 -5 3308 3041 538 264 119 44 chr3 195306254 195306690 -32217888 + L1MC4 LINE L1 7574 8042 0 491 264 28 0 chr3 195307925 195308069 -32216509 + L1ME4a LINE L1 5713 5860 -261 276 193 53 0 chr3 195308759 195308816 -32215762 - MER20 DNA MER1_type -1 218 159 23 54 0 0 chr3 195309424 195309461 -32215117 + AT_rich Low_complexity Low_complexity 1 37 0 242 278 0 21 chr3 195309524 195309621 -32214957 - L1ME4a LINE L1 -53 6068 5974 555 234 23 34 chr3 195309636 195309811 -32214767 + MER5B DNA MER1_type 5 177 -1 261 296 80 56 chr3 195310735 195310860 -32213718 - MIR SINE MIR -123 139 12 356 247 62 0 chr3 195310960 195311057 -32213521 + MIR SINE MIR 143 245 -17 299 337 20 0 chr3 195311177 195311275 -32213303 + L3 LINE CR1 1329 1428 -149 1798 160 16 3 chr3 195311283 195311596 -32212982 - L1MC1 LINE L1 -1 6332 6016 968 178 0 0 chr3 195312683 195312835 -32211743 - AluJb SINE Alu -30 282 131 323 273 0 0 chr3 195312985 195313051 -32211527 - L3 LINE CR1 -15 1562 1497 313 313 80 6 chr3 195313274 195313450 -32211128 - L2 LINE L2 -159 3113 2925 192 320 179 0 chr3 195313460 195313538 -32211040 + MIR SINE MIR 107 198 -64 25 0 0 0 chr3 195313572 195313597 -32210981 + AT_rich Low_complexity Low_complexity 1 25 0 983 228 54 13 chr3 195313937 195314161 -32210417 - MIR SINE MIR -10 252 20 16598 105 18 56 chr3 195314164 195314498 -32210080 - L1PA7 LINE L1 0 6154 5809 2664 39 0 3 chr3 195314498 195314808 -32209770 - AluY SINE Alu -2 309 1 16598 105 18 56 chr3 195314808 195320746 -32203832 - L1PA7 LINE L1 -345 5809 12 187 320 20 0 chr3 195322031 195322081 -32202497 - MIR SINE MIR -177 85 35 * 627 198 16 0 chr3 195322054 195322175 -32202403 + MIR SINE MIR 35 157 -105 673 213 0 7 chr3 195322240 195322395 -32202183 + L1M4 LINE L1 2519 2672 -3474 21 0 0 0 chr3 195323032 195323053 -32201525 + AT_rich Low_complexity Low_complexity 1 21 0 2114 209 110 8 chr3 195324284 195324891 -32199687 - L1ME1 LINE L1 -18 6542 5874 2199 220 71 13 chr3 195324892 195325578 -32199000 - L1ME1 LINE L1 -3311 3229 2504 841 251 72 48 chr3 195325585 195326110 -32198468 - L1ME1 LINE L1 -4115 2425 1888 316 264 56 24 chr3 195326106 195326177 -32198401 - L1ME LINE L1 -563 5558 5480 * 1329 150 35 0 chr3 195326177 195326404 -32198174 - MER46A DNA MER2_type 0 236 2 316 264 56 24 chr3 195326404 195326457 -32198121 - L1ME LINE L1 -641 5480 5430 278 172 172 0 chr3 195326480 195326538 -32198040 + AluSg/x SINE Alu 213 280 -20 23 68 0 0 chr3 195326605 195326649 -32197929 + AT_rich Low_complexity Low_complexity 1 44 0 663 213 0 29 chr3 195326932 195327068 -32197510 - FLAM_A SINE Alu 0 133 2 420 155 52 0 chr3 195327178 195327275 -32197303 + MER53 DNA DNA 4 105 -84 1955 141 3 13 chr3 195327290 195327588 -32196990 + AluJb SINE Alu 1 295 -17 5225 157 10 16 chr3 195327622 195329001 -32195577 - L1MA7 LINE L1 0 6291 4922 1840 171 3 16 chr3 195329001 195329317 -32195261 - AluJo SINE Alu 0 312 1 5225 157 10 16 chr3 195329317 195329588 -32194990 - L1MA7 LINE L1 -1369 4922 4651 255 156 0 0 chr3 195329594 195329639 -32194939 + MER53 DNA DNA 142 186 -3 23 33 0 0 chr3 195329689 195329719 -32194859 + AT_rich Low_complexity Low_complexity 1 30 0 1392 219 44 28 chr3 195329950 195330311 -32194267 + MLT1A2 LTR MaLR 4 370 -4 212 313 45 78 chr3 195330370 195330549 -32194029 - MIR SINE MIR -66 196 24 750 262 121 37 chr3 195330893 195331355 -32193223 - HAL1 LINE L1 -191 2316 1816 810 296 108 24 chr3 195331377 195331752 -32192826 - HAL1 LINE L1 -744 1763 1324 185 0 0 39 chr3 195331752 195331778 -32192800 + (TTTG)n Simple_repeat Simple_repeat 1 25 0 810 296 108 24 chr3 195331778 195331956 -32192622 - HAL1 LINE L1 -1183 1324 1163 313 277 100 8 chr3 195332091 195332221 -32192357 + Charlie2 DNA MER1_type 173 314 -2468 417 282 138 6 chr3 195332253 195332434 -32192144 + Charlie2 DNA MER1_type 423 627 -2155 2303 213 104 22 chr3 195332520 195333290 -32191288 + Charlie2a DNA MER1_type 1472 2304 -558 719 271 46 57 chr3 195333290 195333662 -32190916 + L1PB4 LINE L1 4 371 -6479 328 341 100 29 chr3 195333944 195334114 -32190464 + L1PB4 LINE L1 776 957 -5893 358 336 18 35 chr3 195334515 195334744 -32189834 + L1PA15-16 LINE L1 1324 1548 -5301 307 265 24 24 chr3 195334759 195334842 -32189736 + L1PA15-16 LINE L1 1472 1554 -5295 * 1115 261 24 19 chr3 195334831 195334899 -32189679 + L1PB4 LINE L1 1347 1413 -5436 212 0 36 0 chr3 195334899 195334927 -32189651 + (CA)n Simple_repeat Simple_repeat 1 29 0 1115 261 24 19 chr3 195334927 195335373 -32189205 + L1PB4 LINE L1 1413 1968 -4881 9716 178 25 41 chr3 195335385 195335609 -32188969 + L1PB4 LINE L1 3776 4002 -2857 1632 187 7 16 chr3 195335609 195335914 -32188664 + AluJo SINE Alu 1 302 -10 9716 178 25 41 chr3 195335914 195338521 -32186057 + L1PB4 LINE L1 4002 6546 -313 477 0 0 0 chr3 195338528 195338581 -32185997 + (TCTA)n Simple_repeat Simple_repeat 1 53 0 440 233 67 21 chr3 195338612 195338805 -32185773 + Charlie2a DNA MER1_type 2593 2794 -68 309 109 0 0 chr3 195339252 195339298 -32185280 + (TA)n Simple_repeat Simple_repeat 1 46 0 30 0 0 0 chr3 195339436 195339466 -32185112 + AT_rich Low_complexity Low_complexity 1 30 0 1060 153 0 0 chr3 195339886 195340049 -32184529 - U1 snRNA snRNA -1 164 2 469 200 111 37 chr3 195340221 195340356 -32184222 - MIR SINE MIR -10 252 108 21 0 0 0 chr3 195341022 195341043 -32183535 + AT_rich Low_complexity Low_complexity 1 21 0 345 192 30 40 chr3 195343743 195343842 -32180736 - MIR SINE MIR -150 112 15 29 0 0 0 chr3 195345947 195345976 -32178602 + AT_rich Low_complexity Low_complexity 1 29 0 1697 217 69 1 chr3 195347958 195348389 -32176189 - L1ME3A LINE L1 -5 6165 5701 855 215 67 5 chr3 195348726 195348921 -32175657 - L1ME3A LINE L1 -450 5720 5514 200 254 104 15 chr3 195349802 195349869 -32174709 + L2 LINE L2 3149 3221 -92 240 259 136 0 chr3 195353723 195353804 -32170774 - MIR SINE MIR -105 157 66 621 293 76 30 chr3 195354568 195354791 -32169787 - MIR SINE MIR 0 262 34 351 0 0 0 chr3 195354928 195354967 -32169611 + (TG)n Simple_repeat Simple_repeat 1 39 0 610 151 0 38 chr3 195355336 195355442 -32169136 - AluJb SINE Alu -13 299 198 1975 229 64 17 chr3 195356173 195356654 -32167924 + MLT1D LTR MaLR 2 505 0 261 83 0 0 chr3 195357119 195357155 -32167423 + (CAT)n Simple_repeat Simple_repeat 3 38 0 709 267 26 10 chr3 195357165 195357360 -32167218 - MIR SINE MIR -11 251 54 27 0 0 0 chr3 195358165 195358192 -32166386 + AT_rich Low_complexity Low_complexity 1 27 0 21 0 0 0 chr3 195358574 195358595 -32165983 + AT_rich Low_complexity Low_complexity 1 21 0 386 277 54 8 chr3 195360072 195360202 -32164376 - Charlie8 DNA MER1_type -2224 193 58 1918 141 0 10 chr3 195360202 195360493 -32164085 + AluJb SINE Alu 1 288 -24 1781 138 60 3 chr3 195361171 195361453 -32163125 + AluSx SINE Alu 3 300 -12 2452 75 7 0 chr3 195361861 195362167 -32162411 - AluSp SINE Alu -5 308 1 339 298 40 8 chr3 195362625 195362749 -32161829 - L2 LINE L2 -1 3271 3144 301 176 0 0 chr3 195364088 195364139 -32160439 + L1MC4 LINE L1 6653 6703 -1339 336 209 16 126 chr3 195364523 195364714 -32159864 + L1MC4a LINE L1 5674 5843 -1965 194 267 186 0 chr3 195365036 195365122 -32159456 + MIR SINE MIR 47 148 -60 348 290 69 30 chr3 195365275 195365406 -32159172 + MER5A DNA MER1_type 17 152 -37 298 149 50 43 chr3 195365535 195365585 -32158993 + (TA)n Simple_repeat Simple_repeat 1 49 -463 1934 153 0 3 chr3 195365585 195365872 -32158706 + AluJo SINE Alu 1 286 -26 298 149 50 43 chr3 195365872 195366044 -32158534 + (TA)n Simple_repeat Simple_repeat 49 512 0 445 128 13 13 chr3 195366409 195366487 -32158091 - MLT1E2 LTR MaLR -3 623 546 682 174 8 8 chr3 195366489 195366610 -32157968 + FLAM_C SINE Alu 1 121 -22 1213 264 88 25 chr3 195366615 195367101 -32157477 - MLT1E2 LTR MaLR -81 497 1 418 221 62 18 chr3 195368671 195368784 -32155794 - MIR SINE MIR -79 183 66 298 284 33 10 chr3 195369073 195369170 -32155408 + MIR SINE MIR 96 193 -45 307 269 0 13 chr3 195369322 195369400 -32155178 - MIR SINE MIR -112 150 74 395 292 15 74 chr3 195369591 195369793 -32154785 - MIR3 SINE MIR -3 205 16 221 243 0 0 chr3 195369958 195369995 -32154583 - L2 LINE L2 -25 3247 3211 435 248 0 0 chr3 195370011 195370116 -32154462 + MER113 DNA MER1_type? 1 105 -416 46 89 0 0 chr3 195370264 195370387 -32154191 + AT_rich Low_complexity Low_complexity 1 123 0 277 303 67 17 chr3 195370544 195370663 -32153915 - MIR SINE MIR -132 130 6 933 265 61 36 chr3 195370834 195371309 -32153269 - L1MC4 LINE L1 -1 8041 7555 180 0 0 0 chr3 195371353 195371373 -32153205 + (T)n Simple_repeat Simple_repeat 1 20 0 416 318 78 57 chr3 195372179 195372424 -32152154 + MIR SINE MIR 13 262 0 336 287 0 0 chr3 195372991 195373078 -32151500 - MIR SINE MIR 0 262 176 773 302 141 26 chr3 195374302 195374987 -32149591 + L2 LINE L2 2550 3312 -1 430 280 72 8 chr3 195375053 195375178 -32149400 - L2 LINE L2 0 3313 3181 546 323 86 16 chr3 195375272 195375585 -32148993 - L2 LINE L2 -508 2806 2472 1916 119 0 83 chr3 195375605 195375941 -32148637 - AluSx SINE Alu -4 308 1 8077 195 61 74 chr3 195376104 195376124 -32148454 - L1MD1 LINE L1 -2 6634 6615 1924 156 3 13 chr3 195376124 195376426 -32148152 + AluJo SINE Alu 2 300 -12 8077 195 61 74 chr3 195376426 195376740 -32147838 - L1MD1 LINE L1 -21 6615 6298 1504 175 33 125 chr3 195376740 195377196 -32147382 - MLT2D LTR ERVL 0 414 1 8077 195 61 74 chr3 195377196 195377556 -32147022 - L1MD1 LINE L1 -338 6298 5935 261 275 58 0 chr3 195377556 195377625 -32146953 - AluSg/x SINE Alu -113 187 115 8077 195 61 74 chr3 195377625 195378094 -32146484 - L1MD1 LINE L1 -701 5935 5461 1970 117 6 48 chr3 195378094 195378410 -32146168 - AluSg SINE Alu -7 303 1 8077 195 61 74 chr3 195378410 195378951 -32145627 - L1MD1 LINE L1 -1175 5461 4915 1620 185 10 13 chr3 195378951 195379264 -32145314 - AluJb SINE Alu 0 312 1 8077 195 61 74 chr3 195379264 195381249 -32143329 - L1MD1 LINE L1 -1721 4915 2908 3312 219 76 36 chr3 195381246 195382071 -32142507 - L1MD1 LINE L1 -5674 866 9 * 212 211 0 35 chr3 195382106 195382163 -32142415 + (CAAAC)n Simple_repeat Simple_repeat 1 55 0 938 286 193 27 chr3 195382362 195383262 -32141316 + L2 LINE L2 2287 3307 -6 584 232 137 52 chr3 195383353 195383564 -32141014 + MIR SINE MIR 34 262 0 333 297 171 0 chr3 195384031 195384206 -32140372 - MIR SINE MIR -16 246 42 * 373 264 146 0 chr3 195384198 195384308 -32140270 - L2 LINE L2 0 3313 3188 325 292 52 0 chr3 195384449 195384545 -32140033 - L2 LINE L2 -13 3300 3200 235 192 19 19 chr3 195384558 195384610 -32139968 - Charlie8 DNA MER1_type -1008 1409 1358 642 266 90 68 chr3 195384619 195384973 -32139605 - Charlie8 DNA MER1_type -1900 517 156 1571 149 0 65 chr3 195385447 195385582 -32138996 - AluJo SINE Alu -53 259 127 22 0 0 0 chr3 195385582 195385604 -32138974 + AT_rich Low_complexity Low_complexity 1 22 0 1571 149 0 65 chr3 195385604 195385723 -32138855 - AluJo SINE Alu -185 127 2 405 305 73 28 chr3 195386019 195386196 -32138382 - MIR SINE MIR -67 195 11 1954 123 38 17 chr3 195386689 195386981 -32137597 - AluY SINE Alu 0 311 14 285 159 0 0 chr3 195386981 195387025 -32137553 - Alu SINE Alu -258 44 1 27 0 0 0 chr3 195387750 195387777 -32136801 + AT_rich Low_complexity Low_complexity 1 27 0 186 71 0 0 chr3 195388032 195388060 -32136518 + (GCTG)n Simple_repeat Simple_repeat 1 28 0 490 117 0 0 chr3 195388644 195388721 -32135857 - L1MB1 LINE L1 -7 6161 6085 473 255 49 124 chr3 195389489 195389756 -32134822 + MIR SINE MIR 16 262 0 619 85 0 0 chr3 195390184 195390266 -32134312 - AluSg SINE Alu -228 82 1 2494 70 0 16 chr3 195390876 195391188 -32133390 + AluY SINE Alu 1 307 -4 2583 44 0 0 chr3 195391338 195391635 -32132943 + AluY SINE Alu 1 297 -14 1162 81 86 0 chr3 195392446 195392632 -32131946 + MER30 DNA MER1_type 1 202 -28 410 381 25 6 chr3 195393111 195393271 -32131307 + MIR3 SINE MIR 7 169 -39 1887 112 37 0 chr3 195393441 195393749 -32130829 + AluSq SINE Alu 5 322 0 354 283 69 21 chr3 195395094 195395239 -32129339 + MER57B LTR ERV1 21 172 -262 500 172 21 23 chr3 195395296 195395448 -32129130 + LTR54 LTR ERV1 255 510 0 193 353 35 9 chr3 195395481 195395597 -32128981 + L2 LINE L2 2864 2982 -290 2144 126 76 15 chr3 195396723 195397064 -32127514 + THE1B LTR MaLR 1 362 -2 11507 83 28 1 chr3 195397067 195398604 -32125974 + THE1B-int LTR MaLR 2 1580 0 1955 133 89 18 chr3 195398604 195398942 -32125636 + THE1B LTR MaLR 1 362 -2 625 230 249 58 chr3 195400744 195401446 -32123132 - L2 LINE L2 0 3313 2386 884 130 20 0 chr3 195401448 195401594 -32122984 - Tigger7 DNA MER2_type 0 2487 2339 * 1887 173 27 0 chr3 195401589 195401924 -32122654 - Tigger7 DNA MER2_type -2143 344 1 1700 252 126 56 chr3 195401936 195402486 -32122092 - L2 LINE L2 -965 2349 1732 1758 154 195 15 chr3 195402486 195402876 -32121702 - LOR1b LTR ERV1 -1 460 1 1700 252 126 56 chr3 195402876 195403062 -32121516 - L2 LINE L2 -1582 1732 1561 779 239 108 12 chr3 195403139 195403398 -32121180 - L2 LINE L2 -2572 742 459 296 284 53 0 chr3 195405672 195405767 -32118811 - L3 LINE CR1 -11 1566 1467 446 299 119 17 chr3 195411932 195412109 -32112469 - MIR SINE MIR -13 249 55 2480 63 0 7 chr3 195412361 195412663 -32111915 + AluY SINE Alu 2 301 -10 529 298 19 0 chr3 195413197 195413355 -32111223 - MIR SINE MIR -39 223 63 25 51 0 0 chr3 195413637 195413676 -32110902 + AT_rich Low_complexity Low_complexity 1 39 0 257 67 0 22 chr3 195415420 195415465 -32109113 + (GA)n Simple_repeat Simple_repeat 1 44 0 193 213 43 0 chr3 195416946 195416993 -32107585 + L2 LINE L2 3265 3313 0 5442 179 55 14 chr3 195417386 195419499 -32105079 + L1PA16 LINE L1 3970 6166 0 23 54 0 0 chr3 195419543 195419580 -32104998 + AT_rich Low_complexity Low_complexity 1 37 0 182 321 0 0 chr3 195420583 195420639 -32103939 - L2 LINE L2 -12 3301 3246 2266 96 0 43 chr3 195420684 195421006 -32103572 - AluSg SINE Alu -2 308 1 1632 230 144 56 chr3 195421616 195422389 -32102189 - HAL1 LINE L1 -14 2493 1653 1113 228 39 65 chr3 195422408 195422764 -32101814 + MLT2B1 LTR ERVL 131 477 -43 255 170 0 0 chr3 195422767 195422814 -32101764 + (TA)n Simple_repeat Simple_repeat 1 47 0 231 161 0 36 chr3 195422821 195422877 -32101701 - L1MC4 LINE L1 -1339 6703 6650 1041 236 85 71 chr3 195422898 195423627 -32100951 - HAL1 LINE L1 -911 1596 858 359 291 64 17 chr3 195423658 195423830 -32100748 - HAL1 LINE L1 -1746 761 582 630 299 106 30 chr3 195423880 195424278 -32100300 - HAL1 LINE L1 -2056 451 24 1801 107 0 20 chr3 195425394 195425674 -32098904 - AluSq SINE Alu 0 312 38 609 213 80 20 chr3 195426363 195426513 -32098065 - MER5B DNA MER1_type -5 173 15 528 286 169 48 chr3 195427941 195428549 -32096029 - L3 LINE CR1 -3 1574 893 212 300 11 89 chr3 195428857 195428947 -32095631 - L3 LINE CR1 -779 798 716 25 0 0 0 chr3 195429088 195429113 -32095465 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 195431860 195431881 -32092697 + AT_rich Low_complexity Low_complexity 1 21 0 588 266 26 7 chr3 195432003 195432157 -32092421 + MIR3 SINE MIR 43 199 -9 475 242 118 33 chr3 195432601 195433164 -32091414 + Charlie7 DNA MER1_type 86 721 -1891 2265 110 0 3 chr3 195433202 195433503 -32091075 - AluSg SINE Alu -10 300 1 278 276 30 15 chr3 195433508 195433642 -32090936 + Charlie7 DNA MER1_type 2477 2612 0 195 211 35 18 chr3 195433839 195433896 -32090682 - L2 LINE L2 0 3313 3256 194 295 0 66 chr3 195434607 195434668 -32089910 - L2 LINE L2 -1 3271 3215 186 306 20 0 chr3 195434765 195434814 -32089764 - L2 LINE L2 -13 3259 3210 * 188 270 0 0 chr3 195434785 195434822 -32089756 - MIR SINE MIR -28 234 198 261 139 0 0 chr3 195435369 195435412 -32089166 + (T)n Simple_repeat Simple_repeat 1 43 0 1048 193 60 103 chr3 195436047 195436431 -32088147 + MLT2B1 LTR ERVL 3 350 -64 252 86 0 0 chr3 195436431 195436729 -32087849 + AluSx SINE Alu 1 298 0 1048 193 60 103 chr3 195436729 195436792 -32087786 + MLT2B1 LTR ERVL 350 414 0 2474 71 3 0 chr3 195436908 195437217 -32087361 - AluY SINE Alu -1 310 1 285 283 80 18 chr3 195438070 195438183 -32086395 - MIR SINE MIR -65 197 78 428 103 10 72 chr3 195439130 195439227 -32085351 - L1MB4 LINE L1 -1 6179 6089 2466 57 0 7 chr3 195439229 195439525 -32085053 - AluY SINE Alu -17 294 1 484 285 167 16 chr3 195439701 195440073 -32084505 + L2 LINE L2 2883 3310 -3 490 341 45 26 chr3 195441314 195441578 -32083000 + L2 LINE L2 2579 2847 -467 271 329 0 0 chr3 195441853 195441923 -32082655 + L2 LINE L2 3202 3271 -1 1976 161 2 31 chr3 195442171 195442516 -32082062 + L1MC3 LINE L1 6103 6436 -1349 2442 116 11 6 chr3 195442516 195442878 -32081700 + THE1B LTR MaLR 1 364 0 1976 161 2 31 chr3 195442878 195442947 -32081631 + L1MC3 LINE L1 6436 6505 -1280 783 82 261 22 chr3 195442942 195443126 -32081452 + L1MC3 LINE L1 6871 7098 -687 * 245 289 0 58 chr3 195443127 195443231 -32081347 + MLT1F1 LTR MaLR 37 134 -433 474 175 147 21 chr3 195443390 195443533 -32081045 - L1ME4a LINE L1 0 6121 5961 182 324 28 74 chr3 195444140 195444248 -32080330 + L2 LINE L2 2563 2665 -649 257 420 35 7 chr3 195444571 195444714 -32079864 - L2 LINE L2 -17 3255 3109 211 250 0 0 chr3 195446969 195447013 -32077565 + (TA)n Simple_repeat Simple_repeat 2 45 0 240 246 164 0 chr3 195449848 195449909 -32074669 + MIR3 SINE MIR 85 155 -53 916 200 4 72 chr3 195450332 195450567 -32074011 - MER20 DNA MER1_type 0 219 1 488 298 42 31 chr3 195451321 195451512 -32073066 - MIR SINE MIR -50 212 20 623 250 123 9 chr3 195453502 195453714 -32070864 - MIR SINE MIR -20 242 7 882 183 35 18 chr3 195454253 195454422 -32070156 - FRAM SINE Alu -11 165 1 2271 91 7 7 chr3 195455000 195455297 -32069281 - AluSp SINE Alu -16 297 1 2385 167 6 51 chr3 195456017 195456230 -32068348 + L1MA9 LINE L1 5227 5448 -857 1818 160 24 0 chr3 195456230 195456517 -32068061 + AluJb SINE Alu 1 294 -18 2385 167 6 51 chr3 195456517 195456899 -32067679 + L1MA9 LINE L1 5448 5786 -519 2084 159 35 5 chr3 195456907 195457310 -32067268 + L1MA9 LINE L1 5893 6307 -5 358 192 55 0 chr3 195457658 195457731 -32066847 + L1MA9 LINE L1 5908 5984 -328 277 197 30 0 chr3 195457804 195457870 -32066708 - L1ME4a LINE L1 -208 5913 5846 263 290 85 28 chr3 195457875 195458051 -32066527 - L1ME4a LINE L1 -306 5815 5630 351 277 46 56 chr3 195458170 195458365 -32066213 - L1ME4a LINE L1 -728 5450 5258 2230 90 0 20 chr3 195458414 195458715 -32065863 + AluY SINE Alu 1 295 -16 23 0 0 0 chr3 195458755 195458778 -32065800 + AT_rich Low_complexity Low_complexity 1 23 0 289 333 78 0 chr3 195458824 195458914 -32065664 - L2 LINE L2 -18 3254 3158 21 0 0 0 chr3 195459088 195459109 -32065469 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 195460006 195460034 -32064544 + AT_rich Low_complexity Low_complexity 1 28 0 650 305 63 0 chr3 195462406 195462596 -32061982 + MIR SINE MIR 3 204 -58 2353 72 0 0 chr3 195462780 195463070 -32061508 + AluY SINE Alu 1 290 -21 9951 29 12 9 chr3 195463070 195465045 -32059533 + L1PA4 LINE L1 4177 6152 -3 2538 68 3 0 chr3 195465400 195465710 -32058868 - AluY SINE Alu 0 311 1 288 294 46 18 chr3 195465726 195465835 -32058743 - MLT1J2 LTR MaLR -53 397 286 263 269 0 101 chr3 195466411 195466530 -32058048 + MLT1F LTR MaLR 21 127 -415 328 268 204 6 chr3 195466645 195466802 -32057776 + MLT1H LTR MaLR 358 545 -4 21 36 0 0 chr3 195469696 195469724 -32054854 + AT_rich Low_complexity Low_complexity 1 28 0 514 324 67 5 chr3 195471634 195471844 -32052734 - MIR SINE MIR -37 225 3 324 327 10 0 chr3 195472112 195472216 -32052362 + L2 LINE L2 3157 3261 -11 32 43 0 0 chr3 195472416 195472462 -32052116 + AT_rich Low_complexity Low_complexity 1 46 0 23 0 0 0 chr3 195472518 195472541 -32052037 + AT_rich Low_complexity Low_complexity 1 23 0 1068 146 10 31 chr3 195473172 195473364 -32051214 - MER5A DNA MER1_type -1 188 1 180 0 0 0 chr3 195473980 195474000 -32050578 + (A)n Simple_repeat Simple_repeat 1 20 0 2360 22 0 11 chr3 195476187 195476463 -32048115 + AluY SINE Alu 39 311 0 21 57 0 0 chr3 195477660 195477695 -32046883 + AT_rich Low_complexity Low_complexity 1 35 0 184 461 0 0 chr3 195478158 195478275 -32046303 + L3b LINE CR1 1414 1530 -53 241 309 41 0 chr3 195478637 195478734 -32045844 - MIR SINE MIR -70 138 38 1727 150 21 14 chr3 195479389 195479676 -32044902 - AluJb SINE Alu -23 289 1 225 0 0 0 chr3 195482200 195482225 -32042353 + (T)n Simple_repeat Simple_repeat 1 25 0 265 236 127 9 chr3 195482235 195482345 -32042233 - HAL1b LINE L1 -92 1256 1134 441 269 14 51 chr3 195482357 195482573 -32042005 + L1MEd LINE L1 7 214 -5905 2180 131 0 0 chr3 195483043 195483334 -32041244 - AluSx SINE Alu -18 294 4 1877 121 37 0 chr3 195484602 195484875 -32039703 - AluSx SINE Alu -29 283 1 421 237 124 25 chr3 195486238 195486480 -32038098 - L1M4 LINE L1 -1058 5088 4821 47 19 0 0 chr3 195486623 195486677 -32037901 + AT_rich Low_complexity Low_complexity 1 54 0 2263 70 0 11 chr3 195486684 195486970 -32037608 + AluY SINE Alu 1 283 -28 195 0 39 0 chr3 195486970 195486996 -32037582 + (TAA)n Simple_repeat Simple_repeat 2 180 0 2228 94 0 11 chr3 195487188 195487475 -32037103 + AluY SINE Alu 1 284 -27 28 48 0 0 chr3 195487475 195487517 -32037061 + AT_rich Low_complexity Low_complexity 1 42 0 326 366 84 11 chr3 195487679 195487870 -32036708 - MIR SINE MIR -10 252 48 497 298 95 29 chr3 195489452 195489694 -32034884 - MIR SINE MIR 0 262 5 1723 142 61 34 chr3 195490054 195490349 -32034229 + AluJb SINE Alu 1 303 -9 903 131 15 0 chr3 195490351 195490481 -32034097 + FLAM_C SINE Alu 2 133 0 649 236 84 11 chr3 195491008 195491186 -32033392 + MIR SINE MIR 71 261 -1 1856 175 0 3 chr3 195491293 195491590 -32032988 + AluJo SINE Alu 1 296 -16 195 291 51 43 chr3 195491928 195492045 -32032533 + MIR3 SINE MIR 41 158 -50 21 0 0 0 chr3 195492929 195492950 -32031628 + AT_rich Low_complexity Low_complexity 1 21 0 2631 40 0 37 chr3 195493627 195493950 -32030628 + AluY SINE Alu 1 311 0 203 121 30 40 chr3 195495080 195495179 -32029399 + (TTATA)n Simple_repeat Simple_repeat 3 100 0 * 308 133 58 0 chr3 195495166 195495286 -32029292 + (TA)n Simple_repeat Simple_repeat 1 127 0 41 36 0 0 chr3 195495327 195495382 -32029196 + AT_rich Low_complexity Low_complexity 1 55 0 263 69 69 53 chr3 195495382 195495513 -32029065 + (TA)n Simple_repeat Simple_repeat 2 134 0 7075 61 0 0 chr3 195495681 195496515 -32028063 + L1PA7 LINE L1 5318 6151 -3 384 272 96 90 chr3 195497478 195497790 -32026788 + L2 LINE L2 2958 3271 -1 183 167 0 28 chr3 195498108 195498144 -32026434 - L2 LINE L2 -15 3298 3264 * 425 267 235 5 chr3 195498112 195498299 -32026279 - MIR SINE MIR -12 250 21 662 251 39 34 chr3 195498358 195498565 -32026013 + MIR SINE MIR 39 246 -16 658 103 35 26 chr3 195498987 195499103 -32025475 + L1MB5 LINE L1 5771 5887 -287 813 78 17 9 chr3 195499103 195499219 -32025359 + AluSg/x SINE Alu 177 293 -17 1545 174 10 24 chr3 195499220 195499518 -32025060 + L1MB5 LINE L1 5881 6174 0 388 319 14 0 chr3 195499527 195499665 -32024913 + L1MC5 LINE L1 7764 7903 -58 297 185 0 46 chr3 195500407 195500472 -32024106 - MIR SINE MIR 0 262 201 308 229 14 132 chr3 195500594 195500738 -32023840 + MIR SINE MIR 64 190 -72 216 0 0 0 chr3 195500986 195501010 -32023568 + (TTTTTG)n Simple_repeat Simple_repeat 3 26 0 2264 85 3 0 chr3 195502061 195502382 -32022196 + AluSp SINE Alu 1 322 0 387 89 0 0 chr3 195505088 195505144 -32019434 + (CA)n Simple_repeat Simple_repeat 2 57 0 316 258 121 61 chr3 195506639 195506771 -32017807 - MIR3 SINE MIR -66 142 3 239 77 0 26 chr3 195506850 195506889 -32017689 + (CAT)n Simple_repeat Simple_repeat 1 38 0 787 261 65 0 chr3 195506919 195507118 -32017460 - MIR SINE MIR -39 223 12 452 255 16 88 chr3 195507237 195507429 -32017149 + MER20B DNA MER1_type 1 178 -605 281 337 130 16 chr3 195507900 195508084 -32016494 - L2 LINE L2 -555 2759 2555 271 309 152 22 chr3 195508799 195509068 -32015510 + L2 LINE L2 2967 3270 -43 189 366 37 0 chr3 195510129 195510211 -32014367 + MIR SINE MIR 73 157 -105 188 317 78 48 chr3 195511032 195511199 -32013379 + MIR SINE MIR 19 190 -72 443 281 23 58 chr3 195511283 195511551 -32013027 + MLT1H LTR MaLR 1 300 -249 512 285 130 10 chr3 195511679 195511879 -32012699 - MIR SINE MIR -21 241 18 27 29 0 0 chr3 195512996 195513030 -32011548 + AT_rich Low_complexity Low_complexity 1 34 0 3463 140 19 2 chr3 195513366 195513901 -32010677 + L1PA16 LINE L1 5621 6164 -2 238 310 8 93 chr3 195513914 195514043 -32010535 - L2 LINE L2 -12 3301 3184 414 279 98 49 chr3 195514346 195514590 -32009988 - MIR SINE MIR 0 262 7 312 27 0 0 chr3 195515213 195515250 -32009328 + (CA)n Simple_repeat Simple_repeat 1 37 0 2000 125 0 14 chr3 195515452 195515739 -32008839 + AluSx SINE Alu 1 283 -29 1576 185 36 0 chr3 195515984 195516265 -32008313 - AluJo SINE Alu -21 291 1 193 271 148 25 chr3 195516335 195516457 -32008121 + L2 LINE L2 3176 3312 -1 274 263 38 0 chr3 195516685 195516765 -32007813 - L1ME3A LINE L1 -125 6045 5963 254 191 0 0 chr3 195516766 195516813 -32007765 - L1MA9 LINE L1 0 6312 6266 846 153 0 53 chr3 195516815 195516965 -32007613 + FLAM_C SINE Alu 2 143 0 1544 145 4 0 chr3 195516978 195517213 -32007365 + L1M2 LINE L1 5497 5732 -580 218 345 12 0 chr3 195517581 195517665 -32006913 - MIR SINE MIR -84 124 40 340 215 25 0 chr3 195517958 195518037 -32006541 - L1MC4 LINE L1 -1348 6694 6614 422 293 0 45 chr3 195518099 195518256 -32006322 - L2 LINE L2 -35 3278 3129 1179 118 6 6 chr3 195518298 195518468 -32006110 + MLT1A1 LTR MaLR 1 170 -195 836 236 14 27 chr3 195518493 195518713 -32005865 - L2 LINE L2 -486 2828 2612 608 298 54 41 chr3 195519238 195519480 -32005098 - MIR SINE MIR -10 252 8 564 272 56 91 chr3 195520633 195520953 -32003625 + MER102b DNA MER1_type 9 317 -24 27 49 0 0 chr3 195522426 195522467 -32002111 + AT_rich Low_complexity Low_complexity 1 41 0 3702 163 40 23 chr3 195522512 195523113 -32001465 - L1MA6 LINE L1 -3 6297 5682 2525 51 3 0 chr3 195523113 195523409 -32001169 - AluY SINE Alu -14 297 1 3702 163 40 23 chr3 195523409 195523490 -32001088 - L1MA6 LINE L1 -618 5682 5604 2283 89 0 14 chr3 195524644 195524937 -31999641 + AluSx SINE Alu 14 302 -10 762 219 89 22 chr3 195525661 195525885 -31998693 - MIR SINE MIR -1 261 23 183 326 17 40 chr3 195526306 195526424 -31998154 + MIR SINE MIR 13 131 -77 551 333 163 31 chr3 195526696 195527053 -31997525 + L3 LINE CR1 1173 1576 -1 573 205 260 14 chr3 195528254 195528443 -31996135 - MIR SINE MIR -13 249 19 551 277 34 0 chr3 195529058 195529206 -31995372 - MIR SINE MIR -32 230 78 1147 222 20 20 chr3 195529485 195529733 -31994845 - MIR SINE MIR 0 262 15 1921 139 26 23 chr3 195530022 195530331 -31994247 + AluSx SINE Alu 1 310 -2 2528 64 0 10 chr3 195530786 195531097 -31993481 - AluY SINE Alu -3 308 1 236 263 163 47 chr3 195531150 195531340 -31993238 + L2 LINE L2 1945 2156 -1158 541 293 97 50 chr3 195531455 195531920 -31992658 + L2 LINE L2 2464 2950 -364 292 254 45 30 chr3 195531995 195532062 -31992516 + L2 LINE L2 3199 3266 -6 447 283 206 5 chr3 195533881 195534065 -31990513 + MIR SINE MIR 13 233 -29 251 216 35 0 chr3 195534055 195534122 -31990456 + MIR SINE MIR 85 152 -62 * 627 268 127 18 chr3 195534982 195535266 -31989312 - L2 LINE L2 -2 3311 2997 202 250 19 19 chr3 195535491 195535595 -31988983 + (CTG)n Simple_repeat Simple_repeat 3 106 0 752 279 202 47 chr3 195536614 195537419 -31987159 - L2 LINE L2 -4 3309 2346 242 261 93 45 chr3 195537677 195537821 -31986757 + MIR SINE MIR 39 187 -75 203 344 10 10 chr3 195539417 195539513 -31985065 - MIR3 SINE MIR -10 198 103 557 291 35 0 chr3 195542407 195542610 -31981968 + MER113 DNA MER1_type? 4 213 -308 24 0 0 0 chr3 195543859 195543883 -31980695 + AT_rich Low_complexity Low_complexity 1 24 0 657 277 137 3 chr3 195544278 195544614 -31979964 - LTR16B LTR ERVL -76 388 8 264 341 167 0 chr3 195545307 195545433 -31979145 + L2 LINE L2 3122 3268 -4 1503 252 72 31 chr3 195545523 195546063 -31978515 - L1ME1 LINE L1 -8 6158 5597 307 284 18 46 chr3 195546118 195546227 -31978351 + L2 LINE L2 3207 3312 -1 2447 66 7 0 chr3 195547272 195547574 -31977004 - AluY SINE Alu -7 304 1 587 242 100 95 chr3 195548013 195548402 -31976176 + L2 LINE L2 2922 3312 -1 385 313 160 0 chr3 195548447 195548591 -31975987 - MIR3 SINE MIR -23 185 19 773 172 0 0 chr3 195548850 195548966 -31975612 - FLAM_C SINE Alu -27 116 1 192 204 45 0 chr3 195549109 195549153 -31975425 + L2 LINE L2 3256 3301 -12 463 284 43 83 chr3 195549333 195549657 -31974921 + MLT1J LTR MaLR 119 429 -82 243 0 0 0 chr3 195549992 195550019 -31974559 + (T)n Simple_repeat Simple_repeat 1 27 0 553 261 90 17 chr3 195550989 195551223 -31973355 - LTR50 LTR ERVL -544 251 1 266 302 26 43 chr3 195551293 195551409 -31973169 + L3 LINE CR1 1259 1372 -205 2328 93 0 3 chr3 195551487 195551788 -31972790 + AluSg SINE Alu 3 302 -8 418 318 107 4 chr3 195551847 195552080 -31972498 - MIR SINE MIR -1 261 5 209 254 56 14 chr3 195552141 195552212 -31972366 - MIR SINE MIR -97 165 92 342 0 0 0 chr3 195553023 195553061 -31971517 + (TG)n Simple_repeat Simple_repeat 2 39 0 330 254 127 49 chr3 195555499 195555641 -31968937 + MIR3 SINE MIR 20 172 -36 37 52 0 0 chr3 195556290 195556348 -31968230 + AT_rich Low_complexity Low_complexity 1 58 0 2799 142 11 0 chr3 195556750 195557214 -31967364 - L1MB3 LINE L1 -4 6179 5711 855 261 37 21 chr3 195557372 195557613 -31966965 + MIR SINE MIR 13 257 -5 770 264 38 0 chr3 195558989 195559254 -31965324 - L1M4 LINE L1 -1428 4718 4444 192 77 0 0 chr3 195560098 195560124 -31964454 + (CCA)n Simple_repeat Simple_repeat 3 28 0 23 0 0 0 chr3 195561159 195561182 -31963396 + AT_rich Low_complexity Low_complexity 1 23 0 1932 215 48 101 chr3 195561617 195562507 -31962071 + L1MC5 LINE L1 6818 7651 -310 2202 73 35 7 chr3 195562507 195562794 -31961784 - AluY SINE Alu -16 295 1 1932 215 48 101 chr3 195562794 195562893 -31961685 + L1MC5 LINE L1 7651 7754 -207 2866 174 2 13 chr3 195562894 195563810 -31960768 + L1M4 LINE L1 4897 5801 -373 317 311 129 42 chr3 195563931 195564217 -31960361 - L1M4 LINE L1 -847 5299 4989 267 181 14 111 chr3 195564550 195564622 -31959956 + L2 LINE L2 3195 3259 -13 245 278 28 0 chr3 195564733 195564805 -31959773 + GA-rich Low_complexity Low_complexity 4 77 0 193 319 0 0 chr3 195565110 195565157 -31959421 - L2 LINE L2 -16 3256 3210 324 308 17 36 chr3 195565200 195565350 -31959228 + MIR SINE MIR 25 169 -61 243 216 20 0 chr3 195567369 195567420 -31957158 + L2 LINE L2 3221 3272 0 684 314 41 25 chr3 195567474 195567719 -31956859 + MIR SINE MIR 14 262 0 394 284 201 13 chr3 195567836 195568065 -31956513 + MLT1K LTR MaLR 14 285 -303 341 282 92 11 chr3 195568098 195568272 -31956306 + MLT1K LTR MaLR 396 583 -5 293 308 136 30 chr3 195568501 195568670 -31955908 - MER5A DNA MER1_type -1 188 2 731 228 41 20 chr3 195569386 195569583 -31954995 + MER105 DNA DNA 2 202 -2 787 260 84 60 chr3 195570046 195570511 -31954067 + MLT1J LTR MaLR 1 476 -35 220 220 0 0 chr3 195570888 195570938 -31953640 + T-rich Low_complexity Low_complexity 1 50 0 2274 144 3 8 chr3 195571719 195572086 -31952492 + MER47A DNA MER2_type 2 366 0 619 280 18 5 chr3 195572990 195573193 -31951385 + MIR SINE MIR 50 254 -8 340 275 117 42 chr3 195573236 195573356 -31951222 + L2 LINE L2 3139 3267 -5 226 213 0 21 chr3 195574764 195574811 -31949767 + CT-rich Low_complexity Low_complexity 3 48 0 254 143 16 0 chr3 195575228 195575291 -31949287 + T-rich Low_complexity Low_complexity 2 65 0 24 53 0 0 chr3 195575897 195575935 -31948643 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr3 195575982 195576009 -31948569 + AT_rich Low_complexity Low_complexity 1 27 0 676 198 0 0 chr3 195576164 195576280 -31948298 + FLAM_A SINE Alu 5 120 -13 266 132 19 0 chr3 195577383 195577436 -31947142 + (TCTA)n Simple_repeat Simple_repeat 3 56 0 236 206 29 59 chr3 195577494 195577562 -31947016 + LTR16A LTR ERVL 98 163 -287 301 161 48 32 chr3 195577668 195577730 -31946848 + L2 LINE L2 3201 3263 -9 2086 118 0 0 chr3 195578976 195579294 -31945284 - AluSx SINE Alu 0 322 5 214 50 50 0 chr3 195579682 195579722 -31944856 + (TTTTTG)n Simple_repeat Simple_repeat 3 44 0 192 346 30 30 chr3 195580009 195580110 -31944468 + L2 LINE L2 3190 3290 -23 1458 176 18 0 chr3 195581596 195581823 -31942755 + AluJo SINE Alu 1 231 -81 364 208 0 0 chr3 195581823 195581895 -31942683 - HERVK9 LTR ERVK -4218 1698 1627 527 92 0 0 chr3 195581896 195581972 -31942606 - HERVK9 LTR ERVK -5253 663 588 460 110 0 27 chr3 195582218 195582291 -31942287 + AluJo SINE Alu 231 301 -11 965 191 62 19 chr3 195582417 195582627 -31941951 + MER20 DNA MER1_type 1 219 0 187 273 57 91 chr3 195583586 195583674 -31940904 + L3 LINE CR1 1039 1123 -454 678 294 137 51 chr3 195584481 195584933 -31939645 + L2 LINE L2 2823 3313 0 2204 107 3 0 chr3 195584974 195585264 -31939314 - AluSp SINE Alu 0 313 23 3632 43 14 0 chr3 195585685 195586130 -31938448 + L1PA5 LINE L1 5704 6154 0 24 32 0 0 chr3 195587366 195587397 -31937181 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 195587601 195587622 -31936956 + AT_rich Low_complexity Low_complexity 1 21 0 2445 53 0 16 chr3 195588017 195588321 -31936257 - AluY SINE Alu -12 299 1 54 0 0 0 chr3 195588767 195588821 -31935757 + AT_rich Low_complexity Low_complexity 1 54 0 25 0 0 0 chr3 195589422 195589447 -31935131 + AT_rich Low_complexity Low_complexity 1 25 0 210 136 0 0 chr3 195589855 195589899 -31934679 + (CAGA)n Simple_repeat Simple_repeat 2 45 0 433 207 231 8 chr3 195590387 195590508 -31934070 - MIR SINE MIR -27 235 88 311 336 76 31 chr3 195591267 195591556 -31933022 - L2 LINE L2 -750 2564 2263 307 309 72 72 chr3 195591578 195591885 -31932693 - L2 LINE L2 -1219 2095 1789 233 368 86 38 chr3 195592313 195592685 -31931893 - L2 LINE L2 -2141 1173 784 267 300 166 1 chr3 195592717 195592829 -31931749 - MIR SINE MIR -65 143 29 427 233 174 29 chr3 195593834 195594006 -31930572 - MIR SINE MIR -2 260 64 410 305 162 7 chr3 195594571 195594725 -31929853 + MIR SINE MIR 20 197 -65 261 83 0 0 chr3 195596013 195596049 -31928529 + (TG)n Simple_repeat Simple_repeat 2 37 0 2229 92 7 26 chr3 195596950 195597255 -31927323 + AluY SINE Alu 1 299 -12 226 287 92 11 chr3 195601289 195601376 -31923202 + MIR SINE MIR 51 144 -64 2659 161 10 6 chr3 195603881 195604364 -31920214 + MER31A LTR ERV1 1 485 0 224 100 25 0 chr3 195605475 195605515 -31919063 + (TGGA)n Simple_repeat Simple_repeat 1 41 0 501 300 172 40 chr3 195605627 195605900 -31918678 - L2 LINE L2 0 3313 3005 195 42 0 0 chr3 195606242 195606266 -31918312 + (CACCC)n Simple_repeat Simple_repeat 1 24 0 327 311 129 16 chr3 195606651 195606899 -31917679 + MLT1L LTR MaLR 12 287 -328 278 306 79 112 chr3 195607481 195607811 -31916767 - L2 LINE L2 0 3313 2995 420 20 0 0 chr3 195607965 195608016 -31916562 + (CA)n Simple_repeat Simple_repeat 1 100 0 420 20 0 0 chr3 195608016 195608065 -31916513 + (CA)n Simple_repeat Simple_repeat 2 50 0 1548 95 5 5 chr3 195608315 195608525 -31916053 - AluSp SINE Alu -21 292 83 266 237 65 43 chr3 195608751 195608844 -31915734 - MIR3 SINE MIR -31 177 83 307 352 0 0 chr3 195610033 195610124 -31914454 + GA-rich Low_complexity Low_complexity 2 92 0 22 0 0 0 chr3 195610284 195610306 -31914272 + AT_rich Low_complexity Low_complexity 1 22 0 183 265 0 20 chr3 195611726 195611775 -31912803 + MIR SINE MIR 93 140 -122 287 270 22 22 chr3 195611779 195611868 -31912710 - L2 LINE L2 -1 3312 3224 1531 220 47 25 chr3 195612106 195612552 -31912026 + MER31B LTR ERV1 11 466 0 247 241 0 0 chr3 195613976 195614030 -31910548 + (CA)n Simple_repeat Simple_repeat 2 55 0 820 227 59 10 chr3 195614672 195614875 -31909703 + MIR SINE MIR 50 262 0 204 280 140 47 chr3 195614932 195615039 -31909539 + L2 LINE L2 3137 3253 -19 240 345 69 21 chr3 195615385 195615530 -31909048 + L2 LINE L2 2899 3050 -222 1669 240 67 0 chr3 195616423 195616964 -31907614 - L1M3c LINE L1 -4630 2407 1831 1962 240 39 47 chr3 195616996 195617591 -31906987 - L1M3c LINE L1 -6430 600 11 388 263 79 35 chr3 195619206 195619434 -31905144 + HAL1 LINE L1 803 1040 -1467 23 0 0 0 chr3 195619464 195619487 -31905091 + AT_rich Low_complexity Low_complexity 1 23 0 2183 72 0 4 chr3 195619589 195619906 -31904672 + AluY SINE Alu 23 311 0 279 215 15 0 chr3 195619915 195619980 -31904598 + HAL1 LINE L1 1472 1537 -970 627 303 18 0 chr3 195620058 195620279 -31904299 + HAL1 LINE L1 1559 1783 -724 282 245 95 34 chr3 195620846 195620894 -31903684 + HAL1 LINE L1 2242 2286 -221 1514 177 71 71 chr3 195620894 195621290 -31903288 + MSTD LTR MaLR 1 396 0 282 245 95 34 chr3 195621290 195621388 -31903190 + HAL1 LINE L1 2286 2397 -110 1144 168 77 0 chr3 195621561 195621769 -31902809 + MER58A DNA MER1_type 1 224 0 762 194 26 13 chr3 195621835 195621990 -31902588 + FRAM SINE Alu 1 157 -9 28 29 0 0 chr3 195622421 195622456 -31902122 + AT_rich Low_complexity Low_complexity 1 35 0 248 340 19 13 chr3 195623353 195623512 -31901066 - L1ME LINE L1 -477 5644 5485 801 253 32 5 chr3 195623666 195623852 -31900726 - MIR SINE MIR -44 218 28 615 224 103 36 chr3 195624256 195624508 -31900070 + MIR SINE MIR 13 262 0 708 306 31 19 chr3 195625319 195625577 -31899001 + MIR SINE MIR 2 262 0 599 277 15 15 chr3 195625747 195625942 -31898636 + MLT1E2 LTR MaLR 385 579 -47 2294 97 3 7 chr3 195626286 195626594 -31897984 - AluSq SINE Alu -6 307 1 685 149 50 94 chr3 195627975 195628156 -31896422 + MER5A DNA MER1_type 17 189 0 361 273 207 7 chr3 195628411 195628561 -31896017 + LTR16A LTR ERVL 227 406 -44 21 0 0 0 chr3 195628561 195628582 -31895996 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 195629175 195629204 -31895374 + AT_rich Low_complexity Low_complexity 1 29 0 289 276 204 40 chr3 195629687 195629839 -31894739 + MER5B DNA MER1_type 1 177 -1 1456 156 0 0 chr3 195630387 195630605 -31893973 + AluSg/x SINE Alu 84 301 -9 212 167 0 0 chr3 195631131 195631173 -31893405 + A-rich Low_complexity Low_complexity 2 43 0 4258 14 0 4 chr3 195631792 195632283 -31892295 + L1PA2 LINE L1 5667 6155 0 2274 111 0 0 chr3 195632476 195632773 -31891805 + AluY SINE Alu 1 297 -14 236 276 147 80 chr3 195633125 195633288 -31891290 + MIR3 SINE MIR 29 202 -6 2223 110 7 0 chr3 195633571 195633872 -31890706 + AluSx SINE Alu 1 303 -9 380 296 158 44 chr3 195634268 195634471 -31890107 + MIR SINE MIR 37 262 0 2368 266 76 38 chr3 195634922 195636457 -31888121 - L1ME LINE L1 -4116 1964 365 2385 72 0 0 chr3 195636457 195636748 -31887830 + AluY SINE Alu 14 304 -7 2368 266 76 38 chr3 195636748 195637123 -31887455 - L1ME LINE L1 -5715 365 6 1447 205 60 40 chr3 195637335 195637746 -31886832 - MER113 DNA MER1_type? -7 514 113 1609 162 0 92 chr3 195637746 195637891 -31886687 + AluJo SINE Alu 1 103 -209 2305 104 0 13 chr3 195637891 195638207 -31886371 + AluSx SINE Alu 1 312 0 1609 162 0 92 chr3 195638207 195638376 -31886202 + AluJo SINE Alu 103 286 -26 1447 205 60 40 chr3 195638376 195638387 -31886191 - MER113 DNA MER1_type? -408 113 104 2068 127 0 0 chr3 195638387 195638691 -31885887 + AluSq SINE Alu 1 304 0 1447 205 60 40 chr3 195638691 195638719 -31885859 - MER113 DNA MER1_type? -417 104 53 624 278 102 36 chr3 195638748 195638954 -31885624 - MLT1J1 LTR MaLR -19 427 236 198 0 0 0 chr3 195638954 195638976 -31885602 + (GA)n Simple_repeat Simple_repeat 2 23 0 624 278 102 36 chr3 195638976 195639133 -31885445 - MLT1J1 LTR MaLR -210 236 40 338 293 12 10 chr3 195640468 195640558 -31884020 + MIR SINE MIR 27 109 -99 274 258 61 49 chr3 195640560 195640723 -31883855 + L1MC5 LINE L1 7753 7917 -44 21 0 0 0 chr3 195641711 195641732 -31882846 + AT_rich Low_complexity Low_complexity 1 21 0 502 273 32 99 chr3 195642408 195642752 -31881826 + MLT1I LTR MaLR 81 401 -8 1000 287 41 52 chr3 195642873 195643388 -31881190 + REP3 LTR ERV 7 515 -47 201 339 0 0 chr3 195644705 195644761 -31879817 - L2 LINE L2 -31 3241 3186 1489 251 61 53 chr3 195644869 195645262 -31879316 + L1MC4 LINE L1 7172 7575 -467 2295 113 0 3 chr3 195645262 195645562 -31879016 - AluSx SINE Alu -13 299 1 1489 251 61 53 chr3 195645562 195645909 -31878669 + L1MC4 LINE L1 7575 7918 -124 6363 23 5 0 chr3 195648224 195648968 -31875610 + L1PA4 LINE L1 5408 6155 0 5554 126 8 3 chr3 195649275 195650323 -31874255 + L1PA15 LINE L1 5104 6156 -9 2281 103 3 6 chr3 195651648 195651960 -31872618 - AluSx SINE Alu -1 311 1 984 151 0 129 chr3 195651971 195652203 -31872375 - AluJo SINE Alu -26 286 85 548 85 24 0 chr3 195652203 195652285 -31872293 - AluSg/x SINE Alu -62 250 167 1040 189 47 0 chr3 195653490 195653702 -31870876 + Charlie1 DNA MER1_type 5 226 -2535 5658 120 14 6 chr3 195653717 195655320 -31869258 + L1PA15 LINE L1 4531 6160 -5 521 182 10 0 chr3 195655358 195655457 -31869121 + Charlie1 DNA MER1_type 2652 2751 -10 442 338 98 15 chr3 195657133 195657337 -31867241 - MIR SINE MIR -19 243 23 252 0 0 0 chr3 195657865 195657893 -31866685 + (A)n Simple_repeat Simple_repeat 1 28 0 300 190 0 0 chr3 195657965 195658023 -31866555 + L1ME4a LINE L1 5972 6029 -92 303 28 0 0 chr3 195658991 195659027 -31865551 + (TTTC)n Simple_repeat Simple_repeat 2 37 0 413 291 14 7 chr3 195659051 195659199 -31865379 - MIR3 SINE MIR -6 202 54 22 0 0 0 chr3 195660459 195660481 -31864097 + AT_rich Low_complexity Low_complexity 1 22 0 1985 208 28 26 chr3 195661247 195661713 -31862865 - MLT1C LTR MaLR 0 467 1 323 333 62 16 chr3 195661883 195662012 -31862566 + L2 LINE L2 3138 3272 0 431 343 69 16 chr3 195662144 195662474 -31862104 - L2 LINE L2 -224 3048 2695 30 83 0 0 chr3 195662637 195662709 -31861869 + AT_rich Low_complexity Low_complexity 1 72 0 200 343 30 0 chr3 195663668 195663735 -31860843 + L2 LINE L2 3136 3204 -68 209 357 60 0 chr3 195663765 195663849 -31860729 - MIR SINE MIR -140 122 34 1468 198 3 56 chr3 195664630 195664949 -31859629 + AluJo SINE Alu 2 303 -9 213 167 0 0 chr3 195668551 195668605 -31855973 + T-rich Low_complexity Low_complexity 1 54 0 1226 240 21 21 chr3 195668613 195668950 -31855628 + MER58B DNA MER1_type 5 341 0 335 322 43 0 chr3 195669221 195669336 -31855242 - L2 LINE L2 -4 3268 3149 2271 74 7 10 chr3 195670565 195670889 -31853689 + AluY SINE Alu 1 311 0 355 173 49 0 chr3 195671338 195671419 -31853159 + MER53 DNA DNA 103 187 -2 478 206 42 168 chr3 195672284 195672498 -31852080 - MER5A DNA MER1_type 0 189 3 360 293 121 14 chr3 195673086 195673441 -31851137 + MLT1J2 LTR MaLR 19 411 -39 279 0 0 0 chr3 195673648 195673679 -31850899 + (A)n Simple_repeat Simple_repeat 1 31 0 253 329 14 0 chr3 195673681 195673754 -31850824 + MER5A DNA MER1_type 54 127 -62 1535 195 44 41 chr3 195673774 195674138 -31850440 + MLT1A1 LTR MaLR 1 365 0 540 284 84 40 chr3 195674653 195674949 -31849629 + L2 LINE L2 2884 3192 -121 204 191 21 21 chr3 195674954 195675001 -31849577 + MIR SINE MIR 216 262 0 25 31 0 0 chr3 195675095 195675127 -31849451 + AT_rich Low_complexity Low_complexity 1 32 0 470 264 124 10 chr3 195675145 195675338 -31849240 + MIR SINE MIR 20 234 -28 23 78 0 0 chr3 195677641 195677692 -31846886 + AT_rich Low_complexity Low_complexity 1 51 0 251 146 58 78 chr3 195677695 195677798 -31846780 + L1MD3 LINE L1 7895 7995 0 466 300 9 5 chr3 195677932 195678142 -31846436 - L1ME4a LINE L1 -267 5854 5644 2136 88 9 64 chr3 195679021 195679351 -31845227 + AluSx SINE Alu 1 312 0 320 218 271 0 chr3 195679355 195679488 -31845090 + MER102b DNA MER1_type 172 340 -1 302 298 43 0 chr3 195680878 195680972 -31843606 + L2 LINE L2 3207 3304 -9 3171 205 64 26 chr3 195681040 195681836 -31842742 - L1ME1 LINE L1 0 6166 5341 252 135 77 0 chr3 195682767 195682819 -31841759 + MIR SINE MIR 107 162 -100 445 232 196 54 chr3 195684175 195684230 -31840348 - MIR SINE MIR -2 260 214 1828 164 6 50 chr3 195684230 195684548 -31840030 - AluSx SINE Alu -8 304 1 445 232 196 54 chr3 195684548 195684716 -31839862 - MIR SINE MIR -48 214 5 395 254 59 17 chr3 195685233 195685351 -31839227 + L2 LINE L2 3182 3304 -9 360 240 284 10 chr3 195685714 195685922 -31838656 + L1ME4a LINE L1 5657 5921 -200 2129 132 3 0 chr3 195686937 195687248 -31837330 + AluSx SINE Alu 1 312 0 323 346 158 8 chr3 195687410 195687537 -31837041 - L2 LINE L2 -6 3266 3121 949 218 6 0 chr3 195687900 195688079 -31836499 - MER5A DNA MER1_type -9 180 1 526 161 19 93 chr3 195688214 195688376 -31836202 + L1MC3 LINE L1 6821 6970 -815 666 88 10 0 chr3 195688484 195688586 -31835992 + AluY SINE Alu 209 311 0 949 218 6 0 chr3 195689239 195689418 -31835160 - MER5A DNA MER1_type -9 180 1 1828 166 88 49 chr3 195689553 195689847 -31834731 + L1MC3 LINE L1 6821 7143 -642 2364 125 14 6 chr3 195689847 195690208 -31834370 + THE1B LTR MaLR 1 364 0 1828 166 88 49 chr3 195690208 195690401 -31834177 + L1MC3 LINE L1 7143 7327 -458 1177 287 24 45 chr3 195692868 195693289 -31831289 - L2 LINE L2 0 3313 2902 628 295 154 40 chr3 195693546 195694268 -31830310 - L2 LINE L2 -21 3251 2443 192 77 0 0 chr3 195694307 195694333 -31830245 + (A)n Simple_repeat Simple_repeat 1 26 0 270 0 0 0 chr3 195694477 195694507 -31830071 + (CA)n Simple_repeat Simple_repeat 1 30 0 839 202 74 54 chr3 195695556 195695814 -31828764 - ORSL DNA AcHobo -8 267 5 22 70 0 0 chr3 195695945 195695988 -31828590 + AT_rich Low_complexity Low_complexity 1 43 0 239 356 44 11 chr3 195697248 195697338 -31827240 - MIR SINE MIR -162 100 8 781 262 83 9 chr3 195697761 195697990 -31826588 - MIR SINE MIR -1 261 16 1483 151 0 0 chr3 195698055 195698274 -31826304 - AluSx SINE Alu -91 221 3 185 184 41 0 chr3 195698336 195698385 -31826193 + (TATG)n Simple_repeat Simple_repeat 1 51 0 498 236 155 19 chr3 195699082 195699243 -31825335 - MER5A DNA MER1_type -3 186 4 407 285 28 42 chr3 195700367 195700511 -31824067 + MIR SINE MIR 33 174 -88 1508 164 4 8 chr3 195704376 195704632 -31819946 - AluSx SINE Alu -15 297 43 2160 128 43 6 chr3 195705308 195705659 -31818919 - THE1B LTR MaLR 0 364 1 830 159 20 50 chr3 195706025 195706226 -31818352 + L1MB3 LINE L1 5980 6174 -9 565 268 47 23 chr3 195707538 195707715 -31816863 - MIR3 SINE MIR -6 202 18 283 385 51 36 chr3 195707779 195708114 -31816464 + L2 LINE L2 2932 3271 -1 423 330 28 23 chr3 195708214 195708390 -31816188 + MER5B DNA MER1_type 1 177 -1 204 231 9 130 chr3 195708893 195709001 -31815577 - MIR SINE MIR -50 212 118 291 109 0 0 chr3 195709385 195709431 -31815147 - MADE1 DNA Mariner 0 80 35 573 63 13 0 chr3 195709438 195709517 -31815061 + MADE1 DNA Mariner 1 80 0 499 275 99 57 chr3 195709703 195709914 -31814664 - MIR SINE MIR -15 247 28 818 198 47 5 chr3 195710133 195710325 -31814253 + MER20 DNA MER1_type 20 219 0 333 253 93 55 chr3 195711153 195711335 -31813243 + MER5A DNA MER1_type 1 189 0 667 276 88 72 chr3 195711626 195711988 -31812590 - L2 LINE L2 -27 3286 2919 231 299 22 104 chr3 195712098 195712232 -31812346 + L3 LINE CR1 1147 1269 -308 2446 90 3 0 chr3 195712259 195712571 -31812007 - AluSp SINE Alu 0 313 1 352 314 92 39 chr3 195712585 195712792 -31811786 + L3 LINE CR1 1271 1488 -89 23 0 0 0 chr3 195713503 195713526 -31811052 + AT_rich Low_complexity Low_complexity 1 23 0 2319 108 47 8 chr3 195713814 195714175 -31810403 + THE1C LTR MaLR 1 375 0 1934 142 3 3 chr3 195714577 195714859 -31809719 - AluSx SINE Alu -30 282 1 755 226 14 112 chr3 195717659 195717946 -31806632 - MER102b DNA MER1_type -1 340 82 252 236 28 28 chr3 195718063 195718135 -31806443 + MIR SINE MIR 25 96 -112 586 287 58 68 chr3 195719462 195719903 -31804675 - LTR16A LTR ERVL -10 440 1 195 312 71 26 chr3 195720273 195720427 -31804151 + L2 LINE L2 1890 2050 -1264 237 354 92 68 chr3 195720844 195721169 -31803409 + L2 LINE L2 2934 3266 -6 782 287 49 0 chr3 195721870 195722114 -31802464 - MIR SINE MIR -2 260 5 385 300 140 25 chr3 195722120 195722320 -31802258 + MIR SINE MIR 34 256 -6 238 333 156 0 chr3 195723534 195723630 -31800948 - L2 LINE L2 -29 3243 3133 535 14 14 14 chr3 195723820 195723893 -31800685 + (TAGA)n Simple_repeat Simple_repeat 2 74 0 182 288 225 12 chr3 195724000 195724080 -31800498 + MIR SINE MIR 50 146 -116 562 302 50 0 chr3 195724621 195724800 -31799778 - MIR SINE MIR -32 230 43 276 306 126 0 chr3 195724796 195724907 -31799671 + MIR SINE MIR 133 257 -5 * 288 247 12 47 chr3 195724933 195725018 -31799560 - MIR SINE MIR -155 107 26 989 271 40 4 chr3 195725349 195725596 -31798982 + MIR SINE MIR 2 257 -5 327 305 19 9 chr3 195725630 195725735 -31798843 + L2 LINE L2 3203 3308 -5 205 225 0 70 chr3 195725805 195725876 -31798702 - MIR3 SINE MIR -34 174 109 268 337 53 0 chr3 195725912 195726007 -31798571 - MIR SINE MIR -93 115 16 21 36 0 0 chr3 195726250 195726278 -31798300 + AT_rich Low_complexity Low_complexity 1 28 0 2226 86 0 4 chr3 195726817 195727096 -31797482 + AluSg SINE Alu 1 278 -32 396 59 0 0 chr3 195727099 195727150 -31797428 + (CA)n Simple_repeat Simple_repeat 2 52 0 586 182 42 55 chr3 195728353 195728518 -31796060 + MER103 DNA DNA 3 165 -1 1333 243 36 70 chr3 195728648 195729174 -31795404 + MLT1J LTR MaLR 1 508 -3 2327 106 7 0 chr3 195729307 195729609 -31794969 - AluSx SINE Alu -8 304 1 575 308 118 15 chr3 195729619 195729957 -31794621 + MLT1I LTR MaLR 33 405 -4 202 129 0 145 chr3 195730927 195730989 -31793589 - L2 LINE L2 -3 3269 3217 269 307 13 0 chr3 195731379 195731454 -31793124 + MIR SINE MIR 65 140 -68 312 269 239 8 chr3 195731464 195731598 -31792980 + MER5A DNA MER1_type 9 173 -16 192 369 62 44 chr3 195733078 195733238 -31791340 + L2 LINE L2 3108 3270 -2 267 288 122 22 chr3 195735525 195735664 -31788914 + MIR SINE MIR 20 172 -90 218 356 15 61 chr3 195735839 195735971 -31788607 + L2 LINE L2 3046 3171 -101 385 276 138 0 chr3 195736076 195736221 -31788357 - MIR SINE MIR -12 250 86 261 311 78 0 chr3 195736483 195736573 -31788005 - L2 LINE L2 -15 3257 3161 761 242 105 65 chr3 195738363 195738869 -31785709 + MER34B LTR ERV1 2 497 -48 2132 129 7 0 chr3 195739587 195739897 -31784681 + AluSx SINE Alu 1 312 0 21 0 0 0 chr3 195740054 195740075 -31784503 + AT_rich Low_complexity Low_complexity 1 21 0 445 186 178 0 chr3 195740977 195741106 -31783472 + MER104 DNA Tc2 7 158 -22 288 362 43 72 chr3 195741414 195741690 -31782888 + L2 LINE L2 3005 3272 0 563 281 27 27 chr3 195742271 195742531 -31782047 + MIR SINE MIR 3 262 0 2810 167 25 31 chr3 195743008 195743613 -31780965 - L1MB7 LINE L1 0 6184 5584 473 323 114 48 chr3 195745885 195746201 -31778377 + L2 LINE L2 2927 3263 -9 704 244 92 46 chr3 195746502 195746978 -31777600 + L1ME4a LINE L1 5621 6118 -3 1807 154 4 14 chr3 195747371 195747651 -31776927 + AluJo SINE Alu 1 277 -35 234 0 0 0 chr3 195747661 195747687 -31776891 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 209 212 73 134 chr3 195748327 195748506 -31776072 - MER5B DNA MER1_type 0 178 11 * 211 303 46 37 chr3 195748411 195748520 -31776058 + MER5A DNA MER1_type 80 189 0 456 196 78 0 chr3 195748877 195748979 -31775599 + MIR SINE MIR 153 262 0 1045 246 128 10 chr3 195749983 195750389 -31774189 + HAL1 LINE L1 1573 2026 -481 430 280 151 35 chr3 195750395 195750421 -31774157 + L1MC4a LINE L1 5916 5938 -1870 2373 94 10 0 chr3 195750421 195750730 -31773848 + AluSx SINE Alu 1 312 0 430 280 151 35 chr3 195750730 195750935 -31773643 + L1MC4a LINE L1 5938 6174 -1634 287 228 132 37 chr3 195751300 195751436 -31773142 - MER20B DNA MER1_type -634 149 1 452 281 70 16 chr3 195751808 195751936 -31772642 - MIR3 SINE MIR -62 146 12 657 265 28 22 chr3 195752109 195752290 -31772288 - MIR SINE MIR -48 214 33 1642 189 7 17 chr3 195753515 195753817 -31770761 - AluJo SINE Alu -9 303 5 234 304 88 8 chr3 195754433 195754558 -31770020 - L3b LINE CR1 -166 1417 1283 408 312 50 25 chr3 195755610 195755809 -31768769 + MIR SINE MIR 29 232 -30 226 281 0 53 chr3 195756404 195756461 -31768117 + L2 LINE L2 3245 3298 -15 746 255 106 30 chr3 195757275 195757584 -31766994 - MLT1G LTR MaLR -2 553 150 2642 46 0 0 chr3 195757584 195757890 -31766688 + AluY SINE Alu 1 306 -5 746 255 106 30 chr3 195757890 195758013 -31766565 - MLT1G LTR MaLR -405 150 38 1283 151 4 44 chr3 195758153 195758378 -31766200 - AluJo SINE Alu -12 300 85 379 246 96 40 chr3 195759618 195759743 -31764835 - MIR SINE MIR -65 143 34 396 278 58 58 chr3 195759748 195759921 -31764657 + MIR SINE MIR 8 180 -82 229 301 34 62 chr3 195760512 195760688 -31763890 + L2 LINE L2 2884 3054 -218 634 252 62 33 chr3 195760837 195761047 -31763531 + MIR SINE MIR 8 223 -39 216 158 0 0 chr3 195761118 195761156 -31763422 + (TCCA)n Simple_repeat Simple_repeat 4 41 0 935 308 119 14 chr3 195762112 195762540 -31762038 + L2 LINE L2 2841 3313 0 2322 92 23 0 chr3 195762785 195763088 -31761490 + AluSx SINE Alu 1 310 -2 273 119 0 0 chr3 195763091 195763133 -31761445 + (GAAA)n Simple_repeat Simple_repeat 2 43 0 600 287 19 5 chr3 195763322 195763538 -31761040 + L1MC4 LINE L1 7396 7614 -428 7626 30 1 0 chr3 195764196 195765156 -31759422 - L1P LINE L1 -932 5214 4254 244 329 67 40 chr3 195765312 195765461 -31759117 - MIR3 SINE MIR -6 202 50 352 231 103 60 chr3 195765533 195765650 -31758928 + L2 LINE L2 3149 3270 -2 24 0 0 0 chr3 195765737 195765761 -31758817 + AT_rich Low_complexity Low_complexity 1 24 0 24 0 0 0 chr3 195765962 195765986 -31758592 + AT_rich Low_complexity Low_complexity 1 24 0 243 240 178 85 chr3 195766124 195766223 -31758355 - MIR SINE MIR -62 200 85 2360 105 0 0 chr3 195766223 195766528 -31758050 + AluSg SINE Alu 1 305 -5 243 240 178 85 chr3 195766528 195766557 -31758021 - MIR SINE MIR -177 85 60 2994 149 36 13 chr3 195767195 195767725 -31756853 + MER44D DNA MER2_type 3 599 -6 543 255 147 25 chr3 195768469 195768701 -31755877 - MIR SINE MIR 0 262 7 1890 163 29 26 chr3 195768729 195769057 -31755521 - L1MA10 LINE L1 -1 6333 5841 1417 231 10 44 chr3 195769057 195769443 -31755135 + MLT1A2 LTR MaLR 1 373 -1 1890 163 29 26 chr3 195769443 195769545 -31755033 - L1MA10 LINE L1 -493 5841 5741 1867 153 72 18 chr3 195769554 195769953 -31754625 - L1MB7 LINE L1 -178 6006 5589 474 333 22 11 chr3 195770096 195770276 -31754302 - MIR3 SINE MIR -5 203 22 219 366 65 32 chr3 195771258 195771381 -31753197 - L2 LINE L2 -8 3264 3138 7402 36 1 0 chr3 195771567 195772515 -31752063 + L1PA4 LINE L1 5206 6154 -1 2132 130 7 7 chr3 195773063 195773370 -31751208 + AluSx SINE Alu 1 307 -5 5527 32 0 0 chr3 195773428 195774076 -31750502 + L1PA5 LINE L1 5496 6143 -11 343 319 147 28 chr3 195774631 195774957 -31749621 + L2 LINE L2 1242 1606 -1708 338 279 121 48 chr3 195774948 195775113 -31749465 + MIR SINE MIR 65 241 -21 * 958 261 151 69 chr3 195775177 195775939 -31748639 - L2 LINE L2 -15 3298 2388 199 344 24 16 chr3 195776801 195776926 -31747652 + L2 LINE L2 2650 2775 -539 746 225 32 21 chr3 195777433 195777620 -31746958 + MER5A DNA MER1_type 1 189 0 1758 174 10 0 chr3 195777883 195778181 -31746397 + AluJo SINE Alu 12 312 0 39 74 0 0 chr3 195778212 195778293 -31746285 + AT_rich Low_complexity Low_complexity 1 81 0 553 208 0 0 chr3 195779172 195779278 -31745300 - MIR SINE MIR -56 206 101 491 333 46 36 chr3 195780047 195780353 -31744225 + HAL1b LINE L1 367 675 -673 213 250 25 12 chr3 195780873 195780953 -31743625 + A-rich Low_complexity Low_complexity 2 82 0 209 146 21 0 chr3 195781074 195781122 -31743456 + (CA)n Simple_repeat Simple_repeat 1 49 0 1015 292 58 91 chr3 195781162 195781452 -31743126 - L1M4 LINE L1 -1467 4679 4381 2044 128 40 7 chr3 195781452 195781750 -31742828 - AluSx SINE Alu -4 308 1 1015 292 58 91 chr3 195781750 195781954 -31742624 - L1M4 LINE L1 -1765 4381 4172 1857 172 0 7 chr3 195781954 195782274 -31742304 - AluJo SINE Alu 0 318 1 1015 292 58 91 chr3 195782274 195782411 -31742167 - L1M4 LINE L1 -1974 4172 4032 1234 265 103 25 chr3 195782411 195782981 -31741597 - MLT1L LTR MaLR 0 615 1 1015 292 58 91 chr3 195782981 195783200 -31741378 - L1M4 LINE L1 -2114 4032 3854 333 367 32 13 chr3 195783696 195783854 -31740724 + L2 LINE L2 3098 3258 -14 614 343 28 5 chr3 195783883 195784099 -31740479 - MIR SINE MIR -10 252 32 184 189 132 19 chr3 195785354 195785407 -31739171 - L2 LINE L2 -9 3263 3205 2535 81 0 0 chr3 195786577 195786886 -31737692 + AluY SINE Alu 1 309 -2 282 297 183 35 chr3 195786886 195787081 -31737497 + MIR SINE MIR 31 258 -4 241 153 259 0 chr3 195787820 195787905 -31736673 + MER112 DNA MER1_type 146 252 -8 200 265 122 0 chr3 195788168 195788217 -31736361 - L2 LINE L2 -65 3207 3153 198 313 48 0 chr3 195788300 195788383 -31736195 - L2 LINE L2 -299 2973 2887 2685 188 27 4 chr3 195788755 195789314 -31735264 - L1MB7 LINE L1 -108 6076 5505 1586 143 71 37 chr3 195791064 195791358 -31733220 + AluJo SINE Alu 1 304 -8 186 43 0 0 chr3 195792087 195792110 -31732468 + (A)n Simple_repeat Simple_repeat 1 23 0 847 169 0 0 chr3 195792376 195792389 -31732189 - FLAM_C SINE Alu -172 130 118 199 0 0 0 chr3 195792389 195792411 -31732167 + (TTTTA)n Simple_repeat Simple_repeat 4 30 0 847 169 0 0 chr3 195792411 195792527 -31732051 - FLAM_C SINE Alu -183 119 1 634 240 78 22 chr3 195792555 195792662 -31731916 - MER5A DNA MER1_type 0 189 67 1616 188 38 0 chr3 195792662 195792949 -31731629 + AluJb SINE Alu 3 300 -12 634 240 78 22 chr3 195792949 195793020 -31731558 - MER5A DNA MER1_type -122 67 1 2151 103 0 0 chr3 195794421 195794740 -31729838 + AluSx SINE Alu 1 319 0 237 320 13 0 chr3 195795082 195795157 -31729421 + MIR SINE MIR 64 139 -123 822 256 58 8 chr3 195795183 195795425 -31729153 + L1ME4a LINE L1 5566 5819 -302 506 217 197 25 chr3 195795429 195795632 -31728946 + L1MC5 LINE L1 7606 7843 -118 2285 167 78 19 chr3 195795663 195796264 -31728314 - L1MB7 LINE L1 0 6184 5514 5736 56 5 0 chr3 195796273 195796934 -31727644 - L1PA7 LINE L1 -8 6146 5483 440 278 129 12 chr3 195796979 195797234 -31727344 + L1ME4a LINE L1 5813 6097 -24 1901 123 0 0 chr3 195797303 195797564 -31727014 + AluSx SINE Alu 38 298 -14 559 332 162 37 chr3 195798290 195798549 -31726029 - L2 LINE L2 -3 3310 2982 2708 198 38 15 chr3 195798549 195799075 -31725503 + MLT1F LTR MaLR 3 540 -2 559 332 162 37 chr3 195799075 195799216 -31725362 - L2 LINE L2 -331 2982 2860 184 232 80 107 chr3 195799243 195799355 -31725223 + L2 LINE L2 3205 3313 0 182 262 0 24 chr3 195799915 195799957 -31724621 - MER5A DNA MER1_type -52 137 97 * 278 239 119 85 chr3 195799925 195800101 -31724477 - MIR3 SINE MIR -26 182 1 393 22 0 0 chr3 195800242 195800288 -31724290 + (CA)n Simple_repeat Simple_repeat 2 47 0 1422 216 44 0 chr3 195802755 195803051 -31721527 - AluJo SINE Alu -1 311 3 212 355 124 8 chr3 195803325 195803446 -31721132 - L2 LINE L2 -1 3271 3137 532 249 19 83 chr3 195804363 195804568 -31720010 + MIR3 SINE MIR 6 197 -11 255 79 0 0 chr3 195806728 195806766 -31717812 + (CA)n Simple_repeat Simple_repeat 2 39 0 303 28 0 0 chr3 195807188 195807224 -31717354 + (CA)n Simple_repeat Simple_repeat 2 37 0 1753 211 45 22 chr3 195809620 195809753 -31714825 - L1MB8 LINE L1 -1 6177 6048 1944 118 3 63 chr3 195809753 195810068 -31714510 - AluSx SINE Alu -11 301 6 1753 211 45 22 chr3 195810068 195810422 -31714156 - L1MB8 LINE L1 -130 6048 5679 429 277 160 11 chr3 195810841 195811029 -31713549 + MIR SINE MIR 26 241 -21 422 265 63 83 chr3 195812105 195812348 -31712230 + MLT1H LTR MaLR 85 354 -195 4434 170 7 11 chr3 195812834 195813672 -31710906 - L1P5 LINE L1 -561 5590 4758 1888 166 0 10 chr3 195813672 195813980 -31710598 - AluSx SINE Alu -7 305 1 4434 170 7 11 chr3 195813980 195814329 -31710249 - L1P5 LINE L1 -1393 4758 4409 4003 72 22 47 chr3 195814329 195814543 -31710035 + L1PB1 LINE L1 5586 5804 -347 297 0 0 0 chr3 195814543 195814576 -31710002 + (TG)n Simple_repeat Simple_repeat 2 34 0 4003 72 22 47 chr3 195814576 195814937 -31709641 + L1PB1 LINE L1 5804 6150 -1 282 223 39 85 chr3 195815272 195815371 -31709207 - L1ME4a LINE L1 -34 6087 5994 2265 138 130 16 chr3 195815371 195815755 -31708823 + MSTA LTR MaLR 1 428 0 282 223 39 85 chr3 195815755 195815785 -31708793 - L1ME4a LINE L1 -127 5994 5964 227 296 52 0 chr3 195815894 195816009 -31708569 - MER103 DNA DNA 0 166 46 360 266 199 41 chr3 195816113 195816384 -31708194 - HAL1 LINE L1 -1125 1382 1069 541 135 0 11 chr3 195817869 195817958 -31706620 - MER53 DNA DNA 0 189 102 4467 179 23 9 chr3 195818011 195819005 -31705573 + L1MB8 LINE L1 4422 5426 -743 711 97 0 19 chr3 195819010 195819113 -31705465 + LTR7 LTR ERV1 348 448 -2 20488 95 9 24 chr3 195819115 195822148 -31702430 + HERVH LTR ERV1 1 2987 -4726 930 135 20 0 chr3 195822142 195822290 -31702288 + HERVH LTR ERV1 3140 3290 -4423 * 3321 120 6 2 chr3 195822280 195822780 -31701798 + HERVH LTR ERV1 3492 3993 -3720 4209 145 3 16 chr3 195822782 195823453 -31701125 + HERVH LTR ERV1 4488 5149 -2564 1407 128 18 9 chr3 195823454 195823672 -31700906 + HERVH LTR ERV1 5600 5819 -1894 2560 77 48 13 chr3 195823672 195824049 -31700529 + HERVH LTR ERV1 7324 7713 0 2747 90 58 21 chr3 195824049 195824481 -31700097 + LTR7 LTR ERV1 1 448 -2 623 85 0 0 chr3 195824483 195824565 -31700013 - AluY SINE Alu -227 83 2 21 0 0 0 chr3 195824602 195824623 -31699955 + AT_rich Low_complexity Low_complexity 1 21 0 2437 86 0 0 chr3 195824652 195824954 -31699624 + AluSc SINE Alu 1 302 -7 35 88 0 0 chr3 195825657 195825748 -31698830 + AT_rich Low_complexity Low_complexity 1 91 0 2616 200 54 21 chr3 195825750 195826445 -31698133 + L1MB8 LINE L1 5417 6171 -7 252 167 56 0 chr3 195826445 195826499 -31698079 + MER53 DNA DNA 121 177 -12 * 392 119 0 0 chr3 195826460 195826519 -31698059 - MER53 DNA DNA -128 61 3 382 331 24 24 chr3 195826917 195827083 -31697495 - MER5A DNA MER1_type 0 189 24 210 343 111 0 chr3 195827121 195827220 -31697358 - MER5A DNA MER1_type -76 113 4 207 299 138 0 chr3 195827361 195827448 -31697130 - MIR SINE MIR -3 259 161 246 202 21 106 chr3 195827550 195827644 -31696934 + LTR16C LTR ERVL 84 169 -322 227 276 0 0 chr3 195827640 195827698 -31696880 - MER97a DNA MER1_type? -373 521 464 * 1736 178 119 10 chr3 195827698 195828085 -31696493 + L1ME3 LINE L1 5702 6130 -32 1052 322 25 25 chr3 195828121 195828599 -31695979 + HERV16 LTR ERVL 2456 2933 -2063 718 231 53 29 chr3 195828633 195828841 -31695737 + LTR50 LTR ERVL 471 683 -112 1583 216 41 39 chr3 195828905 195829293 -31695285 - MLT2C1 LTR ERVL -7 390 2 266 237 8 110 chr3 195829294 195829412 -31695166 - MLT2C1 LTR ERVL -101 296 191 682 256 45 45 chr3 195829533 195829756 -31694822 + LTR16C LTR ERVL 269 491 0 902 285 85 35 chr3 195829775 195830408 -31694170 + L2 LINE L2 2646 3313 0 185 297 47 0 chr3 195830797 195830861 -31693717 + L2 LINE L2 3234 3300 -13 1995 173 16 18 chr3 195830865 195831334 -31693244 + MLT2B1 LTR ERVL 1 513 -2 250 62 0 0 chr3 195831350 195831382 -31693196 - MLT2B2 LTR ERVL 0 515 484 272 286 170 9 chr3 195831386 195831498 -31693080 - MIR SINE MIR -130 132 3 228 67 0 0 chr3 195833727 195833757 -31690821 + (CA)n Simple_repeat Simple_repeat 2 31 0 1264 207 51 4 chr3 195833823 195834060 -31690518 + MLT1F LTR MaLR 1 248 -294 1546 100 22 22 chr3 195834082 195834313 -31690265 - L1PA11 LINE L1 0 6174 5944 231 305 66 24 chr3 195834320 195834487 -31690091 + L1ME LINE L1 5690 5863 -303 4771 124 21 24 chr3 195835654 195836410 -31688168 - L1MA9 LINE L1 -5 6307 5554 804 216 52 5 chr3 195836682 195836876 -31687702 + LTR16C LTR ERVL 289 491 0 464 302 114 81 chr3 195837557 195838153 -31686425 - L2 LINE L2 -453 2861 2246 681 199 23 8 chr3 195838457 195838588 -31685990 - MLT1H LTR MaLR -2 547 415 188 260 110 80 chr3 195838804 195838904 -31685674 - MIR SINE MIR -148 114 12 237 336 26 18 chr3 195839334 195839447 -31685131 + L2 LINE L2 3175 3288 -25 432 189 40 0 chr3 195840265 195840339 -31684239 - MER58A DNA MER1_type -7 100 24 2089 103 0 63 chr3 195840739 195841088 -31683490 + AluSq SINE Alu 1 330 0 1648 172 26 70 chr3 195841712 195842096 -31682482 + MLT1A2 LTR MaLR 4 370 -4 1389 154 105 14 chr3 195842209 195842495 -31682083 + AluJb SINE Alu 1 312 0 616 106 39 0 chr3 195842391 195842497 -31682081 + AluSg/x SINE Alu 203 347 0 220 114 0 0 chr3 195842497 195842532 -31682046 + (GAAAA)n Simple_repeat Simple_repeat 5 180 0 739 171 79 12 chr3 195843496 195843660 -31680918 - L2 LINE L2 -1 3312 3138 479 254 14 72 chr3 195843768 195843906 -31680672 + MIR3 SINE MIR 56 185 -23 25 0 0 0 chr3 195843961 195843986 -31680592 + AT_rich Low_complexity Low_complexity 1 25 0 412 292 31 16 chr3 195846365 195846557 -31678021 - L1MC4 LINE L1 -158 7884 7690 1788 138 87 7 chr3 195846695 195846984 -31677594 + AluSx SINE Alu 1 312 0 180 322 21 91 chr3 195847140 195847283 -31677295 - L3 LINE CR1 -78 1499 1367 290 316 129 12 chr3 195847427 195847598 -31676980 - MIR SINE MIR -24 238 48 390 291 82 0 chr3 195847633 195847743 -31676835 + L3 LINE CR1 1436 1554 -23 2239 213 218 24 chr3 195848553 195849304 -31675274 - L2 LINE L2 -519 2795 1899 487 250 61 52 chr3 195849344 195849556 -31675022 - L1ME LINE L1 -297 5824 5611 23 33 0 0 chr3 195850146 195850176 -31674402 + AT_rich Low_complexity Low_complexity 1 30 0 464 328 50 30 chr3 195850877 195851216 -31673362 + L1M4 LINE L1 4451 4792 -1354 1266 213 36 13 chr3 195851340 195851645 -31672933 + MLT1A1 LTR MaLR 25 336 -29 349 238 221 77 chr3 195851664 195851763 -31672815 + HAL1 LINE L1 1199 1282 -1225 2125 99 4 0 chr3 195851763 195852036 -31672542 + AluSp SINE Alu 1 274 -39 349 238 221 77 chr3 195852036 195852246 -31672332 + HAL1 LINE L1 1282 1461 -1046 832 193 75 115 chr3 195852246 195852567 -31672011 - AluJo SINE Alu 0 309 1 349 238 221 77 chr3 195852567 195852722 -31671856 + HAL1 LINE L1 1461 1732 -775 239 203 125 0 chr3 195852770 195852834 -31671744 + MLT1L LTR MaLR 2 73 -542 351 296 28 0 chr3 195852882 195852990 -31671588 + MLT1L LTR MaLR 167 277 -338 2373 84 3 0 chr3 195852993 195853301 -31671277 + AluSp SINE Alu 4 312 -1 184 158 35 0 chr3 195853341 195853398 -31671180 + GA-rich Low_complexity Low_complexity 3 61 0 1040 184 56 47 chr3 195853442 195853600 -31670978 + MLT1F1 LTR MaLR 3 158 -409 1052 215 34 0 chr3 195853600 195853809 -31670769 - MER20 DNA MER1_type 0 219 4 1040 184 56 47 chr3 195853809 195854092 -31670486 + MLT1F1 LTR MaLR 158 567 0 687 283 126 0 chr3 195854107 195854337 -31670241 + MLT1L LTR MaLR 338 596 -19 2274 162 32 72 chr3 195854749 195855135 -31669443 + MLT1D LTR MaLR 1 401 -104 1981 123 65 0 chr3 195855135 195855428 -31669150 - AluSx SINE Alu 0 312 1 1830 163 0 35 chr3 195855429 195855748 -31668830 - AluJo SINE Alu -4 308 1 2274 162 32 72 chr3 195855748 195855885 -31668693 + MLT1D LTR MaLR 400 505 0 1770 261 108 15 chr3 195856201 195856745 -31667833 - MLT1G1 LTR MaLR 0 595 1 238 379 28 14 chr3 195857066 195857211 -31667367 + L2 LINE L2 675 821 -2493 202 261 22 0 chr3 195857489 195857535 -31667043 + MIR SINE MIR 16 62 -200 2668 42 0 0 chr3 195858233 195858544 -31666034 - AluY SINE Alu 0 311 1 527 217 8 31 chr3 195858766 195858895 -31665683 - MIR3 SINE MIR -25 183 58 222 37 0 0 chr3 195858909 195858936 -31665642 + (A)n Simple_repeat Simple_repeat 1 27 0 1745 163 106 3 chr3 195860312 195860643 -31663935 + MLT1A1 LTR MaLR 1 365 0 1832 114 103 0 chr3 195860955 195861227 -31663351 - AluSx SINE Alu -12 300 1 308 254 40 98 chr3 195861363 195861518 -31663060 - L1MC5 LINE L1 -48 7913 7773 2080 45 8 0 chr3 195861518 195861763 -31662815 + AluY SINE Alu 44 290 -21 308 254 40 98 chr3 195861763 195861831 -31662747 - L1MC5 LINE L1 -188 7773 7703 876 177 21 42 chr3 195861836 195862028 -31662550 + L1MC3 LINE L1 7140 7327 -458 630 223 53 15 chr3 195862012 195862218 -31662360 + L1MD3 LINE L1 7781 7994 -1 * 253 290 129 0 chr3 195862600 195862693 -31661885 - MIR SINE MIR -54 208 104 3019 158 32 39 chr3 195862749 195863153 -31661425 + L1P4 LINE L1 4793 5198 -968 2324 80 0 0 chr3 195863153 195863452 -31661126 + AluY SINE Alu 1 299 -12 3019 158 32 39 chr3 195863452 195864041 -31660537 + L1P4 LINE L1 5198 5768 -398 685 182 25 0 chr3 195864055 195864176 -31660402 + FLAM_C SINE Alu 1 124 -19 359 71 20 50 chr3 195864190 195864289 -31660289 + (TTTAA)n Simple_repeat Simple_repeat 5 100 0 234 185 66 33 chr3 195864332 195864483 -31660095 + (TTAA)n Simple_repeat Simple_repeat 3 158 0 819 128 0 0 chr3 195864486 195864611 -31659967 + L1PA16 LINE L1 5494 5618 -548 362 173 37 43 chr3 195864616 195864778 -31659800 + (TTAA)n Simple_repeat Simple_repeat 3 163 0 30 21 0 21 chr3 195864799 195864817 -31659761 + AT_rich Low_complexity Low_complexity 1 18 -29 1512 170 23 30 chr3 195864817 195865082 -31659496 - AluJo SINE Alu -49 263 1 30 21 0 21 chr3 195865082 195865111 -31659467 + AT_rich Low_complexity Low_complexity 18 47 0 2242 98 3 3 chr3 195865114 195865409 -31659169 + AluY SINE Alu 1 295 -16 2313 139 16 10 chr3 195865409 195865796 -31658782 + L1PA16 LINE L1 5777 6165 -1 471 305 15 23 chr3 195865923 195866084 -31658494 + MIR SINE MIR 16 181 -27 1549 134 146 4 chr3 195866355 195866616 -31657962 - AluSx SINE Alu -14 298 1 2146 107 38 0 chr3 195866868 195867157 -31657421 + AluSq SINE Alu 1 300 -13 22 0 0 0 chr3 195867827 195867849 -31656729 + AT_rich Low_complexity Low_complexity 1 22 0 2163 102 3 13 chr3 195868025 195868329 -31656249 + AluSq SINE Alu 1 301 -12 468 282 47 35 chr3 195869232 195869402 -31655176 + MIR SINE MIR 40 211 -51 2292 73 0 3 chr3 195869690 195870008 -31654570 - AluSp SINE Alu 0 318 2 316 299 153 6 chr3 195870100 195870277 -31654301 - MIR SINE MIR 0 262 60 290 61 82 0 chr3 195870294 195870343 -31654235 - L1MB8 LINE L1 -172 6006 5954 924 80 0 0 chr3 195870384 195870496 -31654082 + AluSg/x SINE Alu 189 300 -12 3069 154 30 2 chr3 195870500 195871040 -31653538 - L1MB8 LINE L1 -236 5948 5394 489 17 0 0 chr3 195871237 195871295 -31653283 + (TG)n Simple_repeat Simple_repeat 1 58 0 861 286 24 68 chr3 195871475 195871884 -31652694 + LTR16C LTR ERVL 96 486 -5 1564 216 3 26 chr3 195872470 195872776 -31651802 - AluJo SINE Alu -13 299 1 347 270 53 42 chr3 195872927 195873113 -31651465 + MIR3 SINE MIR 6 188 -58 228 312 78 7 chr3 195873135 195873289 -31651289 + L1MB4 LINE L1 5690 5854 -267 1059 125 60 42 chr3 195873325 195873473 -31651105 + L1MB4 LINE L1 5959 6114 -66 1863 157 28 0 chr3 195873473 195873759 -31650819 - AluJb SINE Alu -18 294 1 1059 125 60 42 chr3 195873759 195873826 -31650752 + L1MB4 LINE L1 6114 6178 -2 181 163 41 0 chr3 195874052 195874101 -31650477 + (TA)n Simple_repeat Simple_repeat 1 51 0 599 349 134 35 chr3 195874298 195875037 -31649541 - L2 LINE L2 -349 2965 2154 357 347 150 20 chr3 195875103 195875856 -31648722 - L2 LINE L2 -1524 1790 940 25 0 0 0 chr3 195875909 195875934 -31648644 + AT_rich Low_complexity Low_complexity 1 25 0 415 247 140 0 chr3 195876206 195876356 -31648222 + L1MC4 LINE L1 7783 7953 -89 329 178 30 170 chr3 195876394 195876529 -31648049 + MER20 DNA MER1_type 17 132 -87 1827 131 150 11 chr3 195876533 195876900 -31647678 + MSTA LTR MaLR 5 422 -6 447 149 35 0 chr3 195876907 195876994 -31647584 + MER20 DNA MER1_type 130 219 0 186 292 0 0 chr3 195877345 195877393 -31647185 - MIR SINE MIR -15 247 200 2371 103 3 0 chr3 195877470 195877782 -31646796 - AluSp SINE Alu 0 313 1 421 305 22 130 chr3 195877813 195878220 -31646358 - L2 LINE L2 0 3272 2910 926 233 6 0 chr3 195878255 195878431 -31646147 - MER5A DNA MER1_type -12 177 1 226 252 8 94 chr3 195878536 195878663 -31645915 + MIR SINE MIR 90 205 -57 829 139 0 36 chr3 195879280 195879417 -31645161 + FLAM_C SINE Alu 1 132 -1 262 0 53 0 chr3 195879746 195879784 -31644794 + (TCTA)n Simple_repeat Simple_repeat 2 41 0 273 241 56 9 chr3 195880809 195880917 -31643661 + L1ME4a LINE L1 6008 6120 -1 2248 94 3 23 chr3 195881319 195881626 -31642952 - AluSp SINE Alu -5 308 8 222 297 121 73 chr3 195881747 195881979 -31642599 - MIR SINE MIR 0 262 20 257 233 17 0 chr3 195883538 195883598 -31640980 - MER5B DNA MER1_type 0 178 118 230 0 33 0 chr3 195883936 195883966 -31640612 + (TA)n Simple_repeat Simple_repeat 2 32 0 666 113 96 9 chr3 195883971 195884086 -31640492 - AluJb SINE Alu -181 131 7 1940 151 19 19 chr3 195884102 195884414 -31640164 - AluSx SINE Alu 0 312 1 216 242 97 0 chr3 195884414 195884476 -31640102 - L2 LINE L2 -12 3260 3193 564 302 62 13 chr3 195885062 195885287 -31639291 - MIR SINE MIR 0 262 27 370 258 43 0 chr3 195885288 195885381 -31639197 + L2 LINE L2 3217 3313 0 381 350 77 16 chr3 195885506 195885689 -31638889 + MIR3 SINE MIR 7 200 -8 1460 248 55 12 chr3 195885887 195886375 -31638203 - L1MC4a LINE L1 0 7808 7300 293 213 111 46 chr3 195886413 195886521 -31638057 + MIR SINE MIR 129 243 -19 262 189 0 0 chr3 195887440 195887493 -31637085 - L1MD3 LINE L1 -341 7654 7602 1113 237 5 79 chr3 195887609 195887789 -31636789 - L2 LINE L2 -690 2624 2487 2112 100 3 39 chr3 195887789 195888100 -31636478 - AluSx SINE Alu -12 300 1 1113 237 5 79 chr3 195888100 195888312 -31636266 - L2 LINE L2 -827 2487 2261 2291 86 3 10 chr3 195888362 195888666 -31635912 - AluSg SINE Alu -8 302 1 565 231 124 67 chr3 195888763 195888840 -31635738 - MLT1H LTR MaLR -4 545 474 1977 137 7 10 chr3 195888840 195889140 -31635438 - AluJb SINE Alu -13 299 1 565 231 124 67 chr3 195889140 195889344 -31635234 - MLT1H LTR MaLR -75 474 248 326 244 133 0 chr3 195889532 195889622 -31634956 + MIR SINE MIR 161 262 0 2367 100 0 3 chr3 195890025 195890356 -31634222 - AluSg SINE Alu 0 330 1 316 251 0 30 chr3 195890708 195890875 -31633703 + (TATG)n Simple_repeat Simple_repeat 3 164 0 216 248 0 29 chr3 195890886 195890991 -31633587 + (TATG)n Simple_repeat Simple_repeat 3 104 0 280 258 0 31 chr3 195891002 195891165 -31633413 + (TATG)n Simple_repeat Simple_repeat 3 160 0 599 206 24 0 chr3 195891217 195891387 -31633191 + (TA)n Simple_repeat Simple_repeat 1 174 0 789 112 0 0 chr3 195892102 195892209 -31632369 - U6 snRNA snRNA 0 107 1 1011 265 57 28 chr3 195892371 195892760 -31631818 - MLT1I LTR MaLR -2 407 8 329 251 117 62 chr3 195892819 195892998 -31631580 + L1ME4a LINE L1 5469 5657 -464 428 229 53 12 chr3 195892999 195893169 -31631409 + L1ME4a LINE L1 5725 5901 -220 3824 177 21 6 chr3 195893339 195894039 -31630539 - L1ME1 LINE L1 -5 6161 5451 189 107 0 0 chr3 195894422 195894450 -31630128 + (T)n Simple_repeat Simple_repeat 1 28 0 23 33 0 0 chr3 195894471 195894501 -31630077 + AT_rich Low_complexity Low_complexity 1 30 0 516 255 62 21 chr3 195894672 195894817 -31629761 + MIR SINE MIR 14 164 -98 294 194 28 102 chr3 195894899 195895007 -31629571 - MIR SINE MIR -52 210 111 643 239 19 38 chr3 195895117 195895276 -31629302 + MER58B DNA MER1_type 186 341 0 704 236 63 26 chr3 195895277 195895468 -31629110 - MIR SINE MIR -47 215 18 294 311 157 34 chr3 195895511 195895746 -31628832 - L2 LINE L2 -6 3307 3044 323 138 207 23 chr3 195896879 195896966 -31627612 - MLT1C LTR MaLR -349 118 16 191 273 23 0 chr3 195897284 195897328 -31627250 - L2 LINE L2 -18 3295 3251 284 285 9 46 chr3 195897369 195897489 -31627089 - MIR SINE MIR -85 123 8 1792 154 10 17 chr3 195898208 195898506 -31626072 - AluJo SINE Alu -16 296 1 192 348 29 22 chr3 195898510 195898648 -31625930 + L2 LINE L2 2733 2871 -443 1394 253 95 50 chr3 195898746 195899028 -31625550 + MLT1H LTR MaLR 1 269 -280 2398 50 40 3 chr3 195899028 195899325 -31625253 + AluY SINE Alu 1 308 -3 1394 253 95 50 chr3 195899325 195899567 -31625011 + MLT1H LTR MaLR 269 549 0 187 359 113 0 chr3 195899584 195899690 -31624888 - L2 LINE L2 -3 3269 3152 184 364 66 16 chr3 195899838 195899959 -31624619 + L2 LINE L2 2595 2721 -593 224 289 87 39 chr3 195900097 195900201 -31624377 + L2 LINE L2 2945 3053 -219 2287 85 3 0 chr3 195900395 195900720 -31623858 - AluSp SINE Alu 0 326 1 29 0 0 0 chr3 195901106 195901135 -31623443 + AT_rich Low_complexity Low_complexity 1 29 0 24 67 0 0 chr3 195901588 195901633 -31622945 + AT_rich Low_complexity Low_complexity 1 45 0 2815 170 48 8 chr3 195902240 195902776 -31621802 + L1MB7 LINE L1 5567 6124 -60 21 36 0 0 chr3 195902777 195902805 -31621773 + AT_rich Low_complexity Low_complexity 1 28 0 646 95 11 11 chr3 195902849 195902944 -31621634 + L1PB3 LINE L1 6057 6151 -3 226 127 0 36 chr3 195903507 195903562 -31621016 + (TTTAA)n Simple_repeat Simple_repeat 3 55 0 196 333 0 0 chr3 195903831 195903897 -31620681 - L3 LINE CR1 -18 1559 1494 745 148 0 84 chr3 195903929 195904084 -31620494 - FLAM_C SINE Alu 0 143 2 270 338 144 7 chr3 195904230 195904411 -31620167 - MIR SINE MIR -57 205 7 255 384 0 2 chr3 195904532 195904659 -31619919 + MIR SINE MIR 19 144 -64 649 256 53 25 chr3 195904707 195904933 -31619645 + MLT1H1 LTR MaLR 8 235 -320 6573 107 0 1 chr3 195904933 195905858 -31618720 - L1PA8 LINE L1 -2031 4115 3192 8601 98 17 1 chr3 195905858 195907832 -31616746 + L1PA8 LINE L1 4145 6172 0 573 236 100 56 chr3 195907839 195908187 -31616391 + MLT1F LTR MaLR 227 533 -9 364 252 117 9 chr3 195908197 195908308 -31616270 + MIR SINE MIR 140 262 0 2206 109 0 31 chr3 195908752 195909072 -31615506 - AluSg SINE Alu 0 310 1 2300 93 0 7 chr3 195909277 195909577 -31615001 - AluY SINE Alu -13 298 1 246 32 0 0 chr3 195909632 195909663 -31614915 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 1925 156 0 3 chr3 195909665 195909948 -31614630 - AluJo SINE Alu -30 282 1 195 256 0 0 chr3 195910116 195910159 -31614419 - MIR SINE MIR -109 153 111 2213 162 28 30 chr3 195910323 195910882 -31613696 + MLT2A2 LTR ERVL 1 554 0 443 276 181 33 chr3 195910955 195911198 -31613380 - MER46C DNA MER2_type -2 336 58 247 170 0 0 chr3 195911263 195911310 -31613268 - MER46C DNA MER2_type -287 51 5 297 0 0 0 chr3 195912145 195912178 -31612400 + (CTG)n Simple_repeat Simple_repeat 1 33 0 2310 79 0 0 chr3 195912532 195912824 -31611754 - AluY SINE Alu -19 292 1 529 279 93 12 chr3 195912827 195912999 -31611579 + MIR SINE MIR 28 213 -49 2183 66 0 0 chr3 195913662 195913933 -31610645 + AluY SINE Alu 41 311 0 3596 193 20 2 chr3 195914717 195915358 -31609220 - MER82 DNA MER2_type 0 653 1 2873 154 52 8 chr3 195915394 195915899 -31608679 - L1MA9 LINE L1 -1 6311 5785 267 89 54 0 chr3 195915908 195915964 -31608614 + (TA)n Simple_repeat Simple_repeat 1 59 0 1777 148 7 14 chr3 195917056 195917339 -31607239 - AluJb SINE Alu -31 281 1 480 224 30 36 chr3 195917346 195917513 -31607065 - L1MA9 LINE L1 -415 5749 5599 2462 82 3 0 chr3 195917513 195917817 -31606761 + AluSp SINE Alu 1 305 -8 480 224 30 36 chr3 195917817 195917834 -31606744 - L1MA9 LINE L1 -565 5599 5583 690 297 42 15 chr3 195917860 195918123 -31606455 - HERV16 LTR ERVL -3062 1934 1665 754 168 90 24 chr3 195918129 195918147 -31606431 - Ricksha DNA DNA -2884 362 347 2017 169 154 57 chr3 195918147 195918621 -31605957 - MLT2B1 LTR ERVL 0 520 1 10493 157 17 17 chr3 195918621 195919098 -31605480 - ERVL-B1 LTR ERVL -7 5757 5281 754 168 90 24 chr3 195918621 195918769 -31605809 - Ricksha DNA DNA -2899 347 185 * 2166 101 17 10 chr3 195919098 195919396 -31605182 - AluSx SINE Alu -12 300 1 10493 157 17 17 chr3 195919396 195920631 -31603947 - ERVL-B1 LTR ERVL -482 5282 4045 2277 200 17 77 chr3 195920631 195920697 -31603881 - MLT2B3 LTR ERVL 0 554 486 405 0 0 0 chr3 195920697 195920742 -31603836 + (TA)n Simple_repeat Simple_repeat 1 45 0 * 477 34 0 0 chr3 195920741 195920800 -31603778 + (GA)n Simple_repeat Simple_repeat 2 60 0 2277 200 17 77 chr3 195920742 195921274 -31603304 - MLT2B3 LTR ERVL -68 486 51 397 101 0 127 chr3 195921359 195921438 -31603140 - MLT2B3 LTR ERVL -483 71 3 2704 189 40 29 chr3 195921438 195921994 -31602584 - ERVL-B1 LTR ERVL -1716 4048 3487 1840 163 14 0 chr3 195921998 195922286 -31602292 - MER1B DNA MER1_type -9 330 39 8322 153 43 2 chr3 195922511 195923827 -31600751 - ERVL-B1 LTR ERVL -2279 3485 2117 293 113 0 19 chr3 195923810 195923863 -31600715 + ERVL LTR ERVL 3910 3961 -1803 * 1093 314 88 43 chr3 195924004 195924099 -31600479 - ERVL-B1 LTR ERVL -3556 1440 1351 1926 183 53 6 chr3 195924099 195924421 -31600157 - MER1B DNA MER1_type 0 337 1 1093 314 88 43 chr3 195924421 195924522 -31600056 - ERVL-B1 LTR ERVL -3645 1351 1256 2429 95 0 0 chr3 195924522 195924826 -31599752 - AluSq SINE Alu -9 304 1 1871 188 33 43 chr3 195924833 195925227 -31599351 - MLT1B LTR MaLR 0 390 1 1093 314 88 43 chr3 195925227 195925700 -31598878 - ERVL-B1 LTR ERVL -3745 1251 731 324 350 89 6 chr3 195925739 195925919 -31598659 - ERVL-B1 LTR ERVL -4341 655 461 626 326 61 4 chr3 195926031 195926292 -31598286 - ERVL-B1 LTR ERVL -4713 283 8 1008 192 122 9 chr3 195926296 195926525 -31598053 - LTR16A1 LTR ERVL 0 457 203 2592 65 0 0 chr3 195926558 195926865 -31597713 - AluY SINE Alu -4 307 1 237 169 310 0 chr3 195926885 195926956 -31597622 - LTR16A1 LTR ERVL -364 93 1 238 227 91 0 chr3 195927107 195927173 -31597405 - L1ME LINE L1 -387 5846 5775 * 859 238 36 2 chr3 195927171 195927612 -31596966 - L1ME LINE L1 -2332 3883 3274 5273 238 74 59 chr3 195927613 195928730 -31595848 - L1MEc LINE L1 -3074 3141 2042 2199 109 0 0 chr3 195928730 195929015 -31595563 - AluSq SINE Alu -22 291 7 5273 238 74 59 chr3 195929015 195929833 -31594745 - L1MEc LINE L1 -4173 2042 1237 1580 203 33 0 chr3 195929833 195930133 -31594445 - AluJo SINE Alu -2 310 1 5273 238 74 59 chr3 195930133 195931330 -31593248 - L1MEc LINE L1 -4978 1237 4 195 220 0 0 chr3 195931383 195931433 -31593145 + (TG)n Simple_repeat Simple_repeat 2 51 0 463 269 73 41 chr3 195931595 195931814 -31592764 - LTR33 LTR ERVL -4 517 292 633 275 42 91 chr3 195931878 195932350 -31592228 - LTR16A1 LTR ERVL -8 449 1 497 190 36 44 chr3 195932393 195932530 -31592048 - LTR33 LTR ERVL -376 145 10 189 74 0 0 chr3 195933470 195933497 -31591081 + (TC)n Simple_repeat Simple_repeat 1 27 0 267 31 0 0 chr3 195933501 195933533 -31591045 + (TG)n Simple_repeat Simple_repeat 1 32 0 319 255 158 82 chr3 195933535 195933731 -31590847 - MLT1K LTR MaLR -28 560 350 338 340 0 0 chr3 195934032 195934126 -31590452 - MIR SINE MIR -112 150 57 534 277 59 30 chr3 195934135 195934337 -31590241 + MIR SINE MIR 2 209 -53 197 264 57 0 chr3 195934731 195934784 -31589794 - L2 LINE L2 0 3313 3258 371 268 64 51 chr3 195935633 195935790 -31588788 + MIR3 SINE MIR 3 161 -47 245 299 13 13 chr3 195935911 195935988 -31588590 + Charlie8 DNA MER1_type 2341 2417 0 2135 129 3 0 chr3 195936121 195936424 -31588154 - AluSx SINE Alu -4 308 5 2569 17 0 3 chr3 195938070 195938392 -31586186 + AluYa5 SINE Alu 1 311 0 546 298 56 9 chr3 195939308 195939668 -31584910 + LTR16B LTR ERVL 3 410 -54 2091 283 115 23 chr3 195940340 195941413 -31583165 - L2 LINE L2 0 3313 2098 2318 97 0 0 chr3 195941413 195941713 -31582865 + AluY SINE Alu 1 300 -11 2091 283 115 23 chr3 195941713 195941929 -31582649 - L2 LINE L2 -1215 2098 1903 650 271 15 30 chr3 195941936 195942139 -31582439 - LTR67 LTR ERVL 0 557 358 361 259 12 24 chr3 195942170 195942255 -31582323 - MER5B DNA MER1_type -1 177 94 2407 75 0 23 chr3 195942655 195942960 -31581618 + AluSx SINE Alu 1 298 -14 22 35 0 0 chr3 195943559 195943588 -31580990 + AT_rich Low_complexity Low_complexity 1 29 0 327 281 55 35 chr3 195943593 195943792 -31580786 - L1ME4a LINE L1 -2 6119 5917 333 0 0 0 chr3 195945221 195945258 -31579320 + (TTCA)n Simple_repeat Simple_repeat 1 37 0 183 295 139 83 chr3 195945258 195945465 -31579113 - L2 LINE L2 -32 3281 3046 2069 125 7 10 chr3 195945465 195945769 -31578809 + AluSq SINE Alu 1 303 -10 183 295 139 83 chr3 195945769 195945900 -31578678 - L2 LINE L2 -267 3046 2924 943 210 44 0 chr3 195946280 195946461 -31578117 - MER5A DNA MER1_type 0 189 1 2180 100 3 42 chr3 195946710 195947019 -31577559 - AluSg SINE Alu -13 297 1 526 226 212 13 chr3 195947091 195947278 -31577300 + MIR SINE MIR 36 256 -6 25 0 0 0 chr3 195948564 195948589 -31575989 + AT_rich Low_complexity Low_complexity 1 25 0 379 272 41 31 chr3 195948678 195948873 -31575705 - L1ME4a LINE L1 -260 5861 5665 443 239 35 18 chr3 195949097 195949210 -31575368 - MIR3 SINE MIR -34 174 60 1336 148 14 40 chr3 195949497 195949720 -31574858 - MER20 DNA MER1_type 0 219 3 1219 8 23 25 chr3 195950309 195950661 -31573917 + (TTC)n Simple_repeat Simple_repeat 1 351 0 195 42 0 0 chr3 195950665 195950689 -31573889 + (TTCTCC)n Simple_repeat Simple_repeat 5 28 0 2018 100 7 7 chr3 195950690 195950970 -31573608 - AluSc SINE Alu -3 306 27 317 94 170 0 chr3 195950970 195951023 -31573555 - L1PA8 LINE L1 -14 6158 6097 266 320 117 8 chr3 195951023 195951151 -31573427 - MIR SINE MIR -97 165 24 2245 97 7 7 chr3 195951923 195952221 -31572357 - AluSg SINE Alu -12 298 1 342 210 0 0 chr3 195952262 195952324 -31572254 - MIR SINE MIR -122 140 79 1787 139 0 4 chr3 195954223 195954482 -31570096 - AluSx SINE Alu -16 296 39 23 0 0 0 chr3 195954666 195954689 -31569889 + AT_rich Low_complexity Low_complexity 1 23 0 2097 206 22 24 chr3 195955123 195955269 -31569309 - L1MB8 LINE L1 0 6178 6033 2010 114 0 63 chr3 195955269 195955586 -31568992 - AluSx SINE Alu -10 302 6 2097 206 22 24 chr3 195955586 195955940 -31568638 - L1MB8 LINE L1 -145 6033 5679 424 270 159 16 chr3 195956359 195956548 -31568030 + MIR SINE MIR 26 241 -21 422 265 63 83 chr3 195957627 195957870 -31566708 + MLT1H LTR MaLR 85 354 -195 4434 169 7 11 chr3 195958356 195959194 -31565384 - L1P5 LINE L1 -561 5590 4758 1870 169 0 10 chr3 195959194 195959502 -31565076 - AluSx SINE Alu -7 305 1 4434 169 7 11 chr3 195959502 195959851 -31564727 - L1P5 LINE L1 -1393 4758 4409 3998 76 22 43 chr3 195959851 195960065 -31564513 + L1PB1 LINE L1 5586 5803 -348 405 0 0 0 chr3 195960065 195960110 -31564468 + (TG)n Simple_repeat Simple_repeat 2 46 0 3998 76 22 43 chr3 195960110 195960469 -31564109 + L1PB1 LINE L1 5803 6150 -1 282 223 39 85 chr3 195960804 195960903 -31563675 - L1ME4a LINE L1 -34 6087 5994 2265 138 130 16 chr3 195960903 195961287 -31563291 + MSTA LTR MaLR 1 428 0 282 223 39 85 chr3 195961287 195961317 -31563261 - L1ME4a LINE L1 -127 5994 5964 227 296 52 0 chr3 195961426 195961541 -31563037 - MER103 DNA DNA 0 166 46 360 266 199 41 chr3 195961645 195961916 -31562662 - HAL1 LINE L1 -1125 1382 1069 541 135 0 11 chr3 195963401 195963490 -31561088 - MER53 DNA DNA 0 189 102 4494 178 23 9 chr3 195963543 195964537 -31560041 + L1MB8 LINE L1 4422 5426 -743 711 97 0 19 chr3 195964542 195964645 -31559933 + LTR7 LTR ERV1 348 448 -2 20583 93 9 24 chr3 195964647 195967680 -31556898 + HERVH LTR ERV1 1 2987 -4726 930 135 20 0 chr3 195967674 195967822 -31556756 + HERVH LTR ERV1 3140 3290 -4423 * 3321 124 6 2 chr3 195967812 195968312 -31556266 + HERVH LTR ERV1 3492 3993 -3720 4257 143 3 16 chr3 195968314 195968985 -31555593 + HERVH LTR ERV1 4488 5149 -2564 1393 133 18 9 chr3 195968986 195969204 -31555374 + HERVH LTR ERV1 5600 5819 -1894 2614 74 45 13 chr3 195969204 195969582 -31554996 + HERVH LTR ERV1 7324 7713 0 2740 93 58 21 chr3 195969583 195970014 -31554564 + LTR7 LTR ERV1 2 448 -2 623 85 0 0 chr3 195970016 195970098 -31554480 - AluY SINE Alu -227 83 2 21 0 0 0 chr3 195970135 195970156 -31554422 + AT_rich Low_complexity Low_complexity 1 21 0 2412 87 0 0 chr3 195970185 195970484 -31554094 + AluSc SINE Alu 1 299 -10 35 88 0 0 chr3 195971187 195971278 -31553300 + AT_rich Low_complexity Low_complexity 1 91 0 2631 200 54 21 chr3 195971280 195971975 -31552603 + L1MB8 LINE L1 5417 6171 -7 283 148 56 0 chr3 195971975 195972029 -31552549 + MER53 DNA DNA 121 177 -12 * 420 102 0 0 chr3 195971990 195972049 -31552529 - MER53 DNA DNA -128 61 3 371 337 24 24 chr3 195972447 195972613 -31551965 - MER5A DNA MER1_type 0 189 24 187 354 111 0 chr3 195972651 195972750 -31551828 - MER5A DNA MER1_type -76 113 4 207 299 138 0 chr3 195972891 195972978 -31551600 - MIR SINE MIR -3 259 161 246 202 21 106 chr3 195973080 195973174 -31551404 + LTR16C LTR ERVL 84 169 -322 227 276 0 0 chr3 195973170 195973228 -31551350 - MER97b DNA MER1_type? -532 521 464 * 1736 178 119 10 chr3 195973228 195973615 -31550963 + L1ME3 LINE L1 5702 6130 -32 1008 347 19 19 chr3 195973651 195974129 -31550449 + ERVL LTR ERVL 2494 2971 -2793 718 231 53 29 chr3 195974163 195974371 -31550207 + LTR50 LTR ERVL 471 683 -112 612 216 75 70 chr3 195974435 195974634 -31549944 - MLT2C1 LTR ERVL -7 390 191 682 256 45 45 chr3 195974755 195974978 -31549600 + LTR16C LTR ERVL 269 491 0 902 285 85 35 chr3 195974997 195975630 -31548948 + L2 LINE L2 2646 3313 0 185 297 47 0 chr3 195976018 195976082 -31548496 + L2 LINE L2 3234 3300 -13 1995 173 16 18 chr3 195976086 195976555 -31548023 + MLT2B1 LTR ERVL 1 513 -2 250 62 0 0 chr3 195976571 195976603 -31547975 - MLT2B2 LTR ERVL 0 515 484 272 286 170 9 chr3 195976607 195976719 -31547859 - MIR SINE MIR -130 132 3 228 67 0 0 chr3 195978948 195978978 -31545600 + (CA)n Simple_repeat Simple_repeat 2 31 0 1264 207 51 4 chr3 195979044 195979281 -31545297 + MLT1F LTR MaLR 1 248 -294 1549 100 22 22 chr3 195979303 195979534 -31545044 - L1PA11 LINE L1 0 6174 5944 306 318 109 21 chr3 195979541 195979780 -31544798 + L1PA11 LINE L1 5693 5952 -222 4771 124 21 24 chr3 195980875 195981631 -31542947 - L1MA9 LINE L1 -5 6307 5554 805 216 52 5 chr3 195981903 195982097 -31542481 + LTR16C LTR ERVL 289 491 0 467 302 112 79 chr3 195982778 195983374 -31541204 - L2 LINE L2 -453 2861 2246 681 199 23 8 chr3 195983678 195983809 -31540769 - MLT1H LTR MaLR -2 547 415 188 260 110 80 chr3 195984025 195984125 -31540453 - MIR SINE MIR -148 114 12 237 336 26 18 chr3 195984555 195984668 -31539910 + L2 LINE L2 3175 3288 -25 432 189 40 0 chr3 195985486 195985560 -31539018 - MER58A DNA MER1_type -7 100 24 2089 103 0 63 chr3 195985960 195986309 -31538269 + AluSq SINE Alu 1 330 0 1648 172 26 70 chr3 195986933 195987317 -31537261 + MLT1A2 LTR MaLR 4 370 -4 1414 150 105 14 chr3 195987430 195987752 -31536826 + AluJb SINE Alu 1 348 0 735 171 79 12 chr3 195988716 195988880 -31535698 - L2 LINE L2 -1 3312 3138 473 254 14 72 chr3 195988988 195989126 -31535452 + MIR3 SINE MIR 56 185 -23 25 0 0 0 chr3 195989181 195989206 -31535372 + AT_rich Low_complexity Low_complexity 1 25 0 508 288 58 38 chr3 195991585 195991825 -31532753 - L1MC4 LINE L1 -158 7884 7640 1777 138 87 7 chr3 195991915 195992204 -31532374 + AluSx SINE Alu 1 312 0 188 322 17 102 chr3 195992360 195992478 -31532100 - L3 LINE CR1 -78 1499 1392 277 290 113 16 chr3 195992694 195992818 -31531760 - MIR SINE MIR -79 183 48 393 291 82 0 chr3 195992853 195992963 -31531615 + L3 LINE CR1 1436 1554 -23 2237 213 218 24 chr3 195993773 195994524 -31530054 - L2 LINE L2 -519 2795 1899 552 231 71 61 chr3 195994564 195994776 -31529802 - L1ME LINE L1 -297 5824 5611 23 33 0 0 chr3 195995365 195995395 -31529183 + AT_rich Low_complexity Low_complexity 1 30 0 251 324 47 23 chr3 195996100 195996356 -31528222 + L1ME4a LINE L1 4455 4716 -1430 4773 163 54 15 chr3 195996629 195997366 -31527212 + L1PB4 LINE L1 5009 5815 -341 432 0 0 0 chr3 195997366 195997414 -31527164 + (CA)n Simple_repeat Simple_repeat 2 49 0 4773 163 54 15 chr3 195997414 195997770 -31526808 + L1PB4 LINE L1 5815 6156 0 309 303 202 27 chr3 195997794 195997982 -31526596 + L1ME4a LINE L1 5320 5540 -2268 654 223 142 24 chr3 195998071 195998403 -31526175 + L1ME4a LINE L1 5746 6116 -5 322 211 126 11 chr3 195999205 195999300 -31525278 - L2 LINE L2 -551 2763 2658 1541 156 0 8 chr3 195999668 195999906 -31524672 + AluJo SINE Alu 13 248 -64 406 221 0 0 chr3 195999957 196000025 -31524553 + MER113 DNA MER1_type? 454 521 0 1368 221 108 86 chr3 196000329 196000744 -31523834 + MLT1L LTR MaLR 1 434 -181 1830 179 0 7 chr3 196000744 196001045 -31523533 + AluJo SINE Alu 1 299 -13 1368 221 108 86 chr3 196001045 196001231 -31523347 + MLT1L LTR MaLR 434 615 0 21 0 0 0 chr3 196001491 196001512 -31523066 + AT_rich Low_complexity Low_complexity 1 21 0 502 184 9 28 chr3 196001913 196002022 -31522556 - MER91B DNA MER1_type -35 155 49 391 253 130 13 chr3 196002225 196002379 -31522199 + MIR SINE MIR 91 262 0 1021 262 127 12 chr3 196003450 196004204 -31520374 - L1ME3 LINE L1 -208 5954 5101 1658 209 57 72 chr3 196004231 196004744 -31519834 + MLT1D LTR MaLR 1 505 0 218 190 0 190 chr3 196004852 196004931 -31519647 - MER5B DNA MER1_type 0 178 115 321 267 13 0 chr3 196004945 196005020 -31519558 + MER5B DNA MER1_type 50 125 -53 237 169 15 77 chr3 196005029 196005094 -31519484 - L1MC4 LINE L1 -120 7922 7862 375 23 0 0 chr3 196006572 196006616 -31517962 + (TG)n Simple_repeat Simple_repeat 2 45 0 264 59 0 0 chr3 196006707 196006741 -31517837 + (TG)n Simple_repeat Simple_repeat 2 35 0 22 0 0 0 chr3 196007101 196007123 -31517455 + AT_rich Low_complexity Low_complexity 1 22 0 508 146 115 62 chr3 196007662 196007792 -31516786 + FLAM_A SINE Alu 1 137 -5 830 156 0 0 chr3 196007932 196008067 -31516511 + L1MA3 LINE L1 6166 6300 -5 24 32 0 0 chr3 196008383 196008414 -31516164 + AT_rich Low_complexity Low_complexity 1 31 0 231 36 0 0 chr3 196008574 196008602 -31515976 + (TC)n Simple_repeat Simple_repeat 2 29 0 * 284 0 28 0 chr3 196008601 196008637 -31515941 + (TA)n Simple_repeat Simple_repeat 2 38 0 268 221 116 23 chr3 196010092 196010178 -31514400 - MER5A DNA MER1_type 0 189 96 2816 282 75 38 chr3 196010262 196011019 -31513559 + L1MC4a LINE L1 3768 4496 -1650 216 67 0 0 chr3 196011019 196011049 -31513529 + (TAATG)n Simple_repeat Simple_repeat 1 30 0 2816 282 75 38 chr3 196011049 196011172 -31513406 + L1MC4a LINE L1 4496 4613 -1533 2473 58 0 26 chr3 196011172 196011480 -31513098 - AluY SINE Alu -11 300 1 2816 282 75 38 chr3 196011480 196012907 -31511671 + L1MC4a LINE L1 4613 5364 -782 42627 73 19 11 chr3 196012939 196020362 -31504216 + L1PA3 LINE L1 219 6166 0 4246 196 88 62 chr3 196019328 196020608 -31503970 + L1MC4 LINE L1 6725 8037 -5 * 1387 71 11 5 chr3 196021321 196021505 -31503073 + L1PA7 LINE L1 5970 6154 0 298 156 0 65 chr3 196022474 196022551 -31502027 - Charlie7 DNA MER1_type -33 2579 2508 6741 208 41 35 chr3 196022631 196023286 -31501292 - L1MB7 LINE L1 -26 6656 6006 198 0 0 0 chr3 196023286 196023308 -31501270 + (TTA)n Simple_repeat Simple_repeat 3 24 0 6741 208 41 35 chr3 196023308 196025095 -31499483 - L1MB7 LINE L1 -676 6006 4231 2376 82 3 0 chr3 196025095 196025389 -31499189 - AluSc SINE Alu -12 297 3 6741 208 41 35 chr3 196025389 196025465 -31499113 - L1MB7 LINE L1 -2451 4231 4157 2853 160 73 49 chr3 196025465 196025757 -31498821 - MER7C DNA MER2_type -2427 601 317 2443 65 0 16 chr3 196025757 196026066 -31498512 + AluY SINE Alu 1 304 -7 2853 160 73 49 chr3 196026066 196026360 -31498218 - MER7C DNA MER2_type -2711 317 1 6741 208 41 35 chr3 196026360 196026570 -31498008 - L1MB7 LINE L1 -2525 4157 3908 1728 227 89 0 chr3 196026582 196027010 -31497568 + MLT2B1 LTR ERVL 9 474 -46 567 125 61 9 chr3 196027015 196027599 -31496979 + (TA)n Simple_repeat Simple_repeat 1 614 0 382 117 0 0 chr3 196027604 196027664 -31496914 - MLT2B1 LTR ERVL -50 470 411 261 0 0 0 chr3 196027679 196027708 -31496870 + (TC)n Simple_repeat Simple_repeat 2 30 0 385 105 0 0 chr3 196027709 196027766 -31496812 + MLT2B1 LTR ERVL 464 520 0 2093 228 37 11 chr3 196027771 196028398 -31496180 - L1MB7 LINE L1 -2734 3910 3268 * 3535 212 19 57 chr3 196028394 196029261 -31495317 - L1MB7 LINE L1 -5701 841 8 196 289 0 0 chr3 196029813 196029851 -31494727 + MIR SINE MIR 30 67 -141 2232 117 0 7 chr3 196030031 196030340 -31494238 + AluSq SINE Alu 1 307 -6 24 53 0 0 chr3 196030432 196030470 -31494108 + AT_rich Low_complexity Low_complexity 1 38 0 223 237 34 17 chr3 196033255 196033314 -31491264 + L2 LINE L2 3209 3268 -4 2548 62 0 0 chr3 196033461 196033768 -31490810 + AluY SINE Alu 1 307 -4 192 158 0 0 chr3 196034521 196034559 -31490019 + A-rich Low_complexity Low_complexity 1 38 0 32 75 0 0 chr3 196035194 196035261 -31489317 + AT_rich Low_complexity Low_complexity 1 67 0 2983 168 39 10 chr3 196035263 196035310 -31489268 - L1MB4 LINE L1 -2 6178 6134 2370 65 17 0 chr3 196035310 196035603 -31488975 - AluSp SINE Alu -15 298 1 2983 168 39 10 chr3 196035603 196036139 -31488439 - L1MB4 LINE L1 -46 6134 5578 459 249 87 54 chr3 196036299 196036416 -31488162 - L1MC4a LINE L1 -1849 5959 5847 2381 71 0 0 chr3 196036416 196036712 -31487866 - AluY SINE Alu -15 296 1 459 249 87 54 chr3 196036712 196036835 -31487743 - L1MC4a LINE L1 -1961 5847 5711 431 163 90 31 chr3 196037634 196037761 -31486817 + L1ME LINE L1 5690 5822 -299 1315 36 0 24 chr3 196038606 196038773 -31485805 + AluY SINE Alu 132 294 -17 234 0 0 0 chr3 196039182 196039208 -31485370 + (TG)n Simple_repeat Simple_repeat 2 27 0 232 240 40 0 chr3 196039326 196039376 -31485202 + MIR3 SINE MIR 108 159 -49 2470 63 0 0 chr3 196039990 196040290 -31484288 + AluY SINE Alu 1 300 -11 1752 164 3 45 chr3 196040462 196040773 -31483805 - AluJb SINE Alu -14 298 1 633 319 20 5 chr3 196040871 196041075 -31483503 + MIR SINE MIR 5 211 -51 296 285 119 63 chr3 196041638 196041817 -31482761 - MIR SINE MIR -52 210 30 2013 103 7 7 chr3 196041910 196042182 -31482396 + AluSx SINE Alu 34 305 -7 1348 198 90 4 chr3 196043215 196043493 -31481085 - AluJo SINE Alu -7 305 4 1980 145 0 0 chr3 196044015 196044329 -31480249 - AluSx SINE Alu 0 314 1 290 326 35 28 chr3 196044420 196044564 -31480014 - MER5B DNA MER1_type -33 145 1 434 269 8 67 chr3 196044585 196044848 -31479730 + LTR16A LTR ERVL 8 249 -201 246 309 47 8 chr3 196044891 196045024 -31479554 + MIR SINE MIR 19 154 -63 195 129 0 0 chr3 196045024 196045055 -31479523 + (CAA)n Simple_repeat Simple_repeat 3 33 0 180 173 19 58 chr3 196045062 196045114 -31479464 + MIR SINE MIR 157 206 -56 4696 169 33 28 chr3 196045377 196046686 -31477892 + L1MB8 LINE L1 4867 6178 0 2369 89 0 10 chr3 196048466 196048780 -31475798 - AluSq SINE Alu -2 311 1 493 199 86 13 chr3 196048850 196049001 -31475577 - L1MD3 LINE L1 -104 7891 7730 387 214 36 79 chr3 196050390 196050530 -31474048 - MER94 DNA DNA 0 134 1 271 418 8 0 chr3 196050705 196050839 -31473739 - MIR3 SINE MIR -69 139 5 644 274 119 0 chr3 196051180 196051399 -31473179 + MIR SINE MIR 16 260 -2 2290 100 0 3 chr3 196052331 196052630 -31471948 - AluSx SINE Alu -14 298 1 198 357 45 9 chr3 196052704 196052816 -31471762 + MIR SINE MIR 120 235 -27 270 267 78 26 chr3 196053046 196053162 -31471416 + MER117 DNA MER1_type 26 147 -50 2227 103 0 0 chr3 196053289 196053589 -31470989 + AluSq SINE Alu 1 300 -13 2504 102 17 11 chr3 196054046 196054408 -31470170 - THE1B LTR MaLR 0 364 1 24 0 0 0 chr3 196054667 196054691 -31469887 + AT_rich Low_complexity Low_complexity 1 24 0 456 268 67 54 chr3 196055559 196055641 -31468937 + MIR SINE MIR 1 80 -182 1937 138 14 0 chr3 196055641 196055917 -31468661 - AluSx SINE Alu -26 286 7 456 268 67 54 chr3 196055917 196056073 -31468505 + MIR SINE MIR 80 242 -20 346 202 10 20 chr3 196056412 196056511 -31468067 + CT-rich Low_complexity Low_complexity 3 100 0 2173 110 7 0 chr3 196057273 196057572 -31467006 - AluSx SINE Alu -11 301 1 695 271 84 10 chr3 196057638 196057841 -31466737 - MIR SINE MIR -42 220 3 1627 117 26 49 chr3 196057909 196058217 -31466361 + L1MA4A LINE L1 5912 6212 -91 300 274 42 0 chr3 196058217 196058312 -31466266 - MER69A DNA AcHobo -48 129 31 405 229 29 9 chr3 196059542 196059647 -31464931 - MER103 DNA DNA -9 157 51 1912 135 27 10 chr3 196060359 196060656 -31463922 - AluJb SINE Alu -6 306 5 2094 99 39 0 chr3 196061164 196061446 -31463132 - AluSx SINE Alu -19 293 1 334 314 39 58 chr3 196061762 196061918 -31462660 + MIR3 SINE MIR 9 161 -47 2324 106 0 3 chr3 196062573 196062885 -31461693 + AluSq SINE Alu 3 313 0 323 339 70 21 chr3 196063112 196063298 -31461280 - L1MC4a LINE L1 -1927 5881 5687 2153 121 3 0 chr3 196063719 196064017 -31460561 - AluSx SINE Alu -13 299 1 203 248 89 59 chr3 196064204 196064305 -31460273 - L3 LINE CR1 -24 1553 1450 23 0 0 0 chr3 196064997 196065020 -31459558 + AT_rich Low_complexity Low_complexity 1 23 0 363 348 59 7 chr3 196066102 196066237 -31458341 + MIR3 SINE MIR 59 200 -8 207 352 73 40 chr3 196066564 196066811 -31457767 + L2 LINE L2 2723 2977 -337 2144 55 82 31 chr3 196068118 196068409 -31456169 - AluSg SINE Alu -4 306 1 1096 201 82 60 chr3 196068956 196069274 -31455304 + MER46C DNA MER2_type 13 337 -1 296 200 0 15 chr3 196069465 196069530 -31455048 - MER46C DNA MER2_type -274 64 1 1044 69 0 0 chr3 196069845 196070074 -31454504 + L1PA7 LINE L1 6013 6241 0 24 32 0 0 chr3 196070785 196070816 -31453762 + AT_rich Low_complexity Low_complexity 1 31 0 989 274 235 18 chr3 196070961 196071741 -31452837 + L2 LINE L2 2372 3313 0 204 67 0 0 chr3 196071873 196071903 -31452675 + (TC)n Simple_repeat Simple_repeat 1 30 0 1638 192 31 3 chr3 196072840 196073132 -31451446 - AluJb SINE Alu -12 300 1 1531 96 55 0 chr3 196073265 196073483 -31451095 - MER30 DNA MER1_type 0 230 1 309 236 14 0 chr3 196073733 196073805 -31450773 + MIR SINE MIR 91 163 -99 2047 128 0 16 chr3 196074082 196074388 -31450190 + AluSx SINE Alu 1 301 -11 243 326 173 47 chr3 196074505 196074806 -31449772 + L2 LINE L2 2913 3251 -21 21 0 0 0 chr3 196075835 196075856 -31448722 + AT_rich Low_complexity Low_complexity 1 21 0 366 123 0 0 chr3 196077713 196077770 -31446808 + (TTCC)n Simple_repeat Simple_repeat 4 60 0 1632 184 7 4 chr3 196077770 196078047 -31446531 - AluJo SINE Alu -34 278 1 492 107 0 36 chr3 196078069 196078153 -31446425 - L1MB3 LINE L1 -1 6182 6102 4752 202 68 12 chr3 196078155 196079880 -31444698 - L1M4 LINE L1 -2511 3871 2040 22 0 0 0 chr3 196079909 196079931 -31444647 + AT_rich Low_complexity Low_complexity 1 22 0 2225 108 14 0 chr3 196080770 196081066 -31443512 - AluSx SINE Alu -12 300 1 614 140 0 0 chr3 196081456 196081556 -31443022 + U13 snRNA snRNA 1 100 -4 1706 50 0 5 chr3 196085483 196085685 -31438893 - AluY SINE Alu -6 305 105 248 339 37 9 chr3 196086100 196086209 -31438369 + L2 LINE L2 3197 3308 -5 2220 91 0 56 chr3 196086920 196087239 -31437339 + AluSq SINE Alu 1 301 -12 21 0 0 0 chr3 196087698 196087719 -31436859 + AT_rich Low_complexity Low_complexity 1 21 0 457 204 0 147 chr3 196088189 196088346 -31436232 + MIR SINE MIR 14 147 -115 286 143 0 29 chr3 196089610 196089680 -31434898 + (TC)n Simple_repeat Simple_repeat 1 68 0 325 298 35 43 chr3 196089791 196089932 -31434646 + MLT1L LTR MaLR 476 615 0 546 226 68 8 chr3 196091051 196091184 -31433394 - MER104 DNA Tc2 -4 176 36 3761 239 68 37 chr3 196091203 196091487 -31433091 + L1ME LINE L1 2991 3265 -2881 1828 159 3 11 chr3 196091487 196091770 -31432808 + AluJo SINE Alu 14 294 -18 3761 239 68 37 chr3 196091770 196092956 -31431622 + L1ME LINE L1 3265 4507 -1639 833 225 32 141 chr3 196093502 196094041 -31430537 + L1MDb LINE L1 774 1245 -5164 1748 134 22 89 chr3 196094041 196094399 -31430179 - MER1B DNA MER1_type 0 337 4 833 225 32 141 chr3 196094399 196094446 -31430132 + L1MDb LINE L1 1245 1296 -5113 1112 175 89 45 chr3 196094449 196094763 -31429815 + L1MDb LINE L1 1387 1714 -4692 812 246 119 18 chr3 196094765 196095050 -31429528 + L1ME LINE L1 5261 5574 -592 806 212 122 11 chr3 196095107 196095296 -31429282 + MER58C DNA MER1_type 2 211 -4 320 250 33 96 chr3 196095308 196095394 -31429184 + MER112 DNA MER1_type 1 91 -165 432 0 0 0 chr3 196095394 196095442 -31429136 + (TCTA)n Simple_repeat Simple_repeat 1 48 0 320 250 33 96 chr3 196095442 196095627 -31428951 + MER112 DNA MER1_type 91 255 -1 2918 87 39 0 chr3 196096177 196096591 -31427987 + L1PA13 LINE L1 5730 6159 -4 829 177 88 70 chr3 196096899 196097114 -31427464 + MER20 DNA MER1_type 1 219 0 2452 25 7 3 chr3 196099334 196099617 -31424961 - AluY SINE Alu -10 301 18 1776 133 46 12 chr3 196099617 196099940 -31424638 - MER1B DNA MER1_type -5 334 1 2316 65 20 0 chr3 196100143 196100437 -31424141 - AluSp SINE Alu -8 305 6 2395 90 3 0 chr3 196100441 196100742 -31423836 - AluSg SINE Alu -8 302 1 216 0 0 0 chr3 196101091 196101115 -31423463 + (A)n Simple_repeat Simple_repeat 1 24 0 189 74 0 0 chr3 196102267 196102294 -31422284 + (CA)n Simple_repeat Simple_repeat 2 28 0 1842 132 0 52 chr3 196102528 196102838 -31421740 + AluSx SINE Alu 1 294 -18 2190 130 10 39 chr3 196104530 196104946 -31419632 - L1 LINE L1 -1217 4929 4526 5333 125 42 4 chr3 196105109 196106791 -31417787 - L1PA15 LINE L1 -1 6164 4418 308 258 62 10 chr3 196106957 196107054 -31417524 - MIR SINE MIR -29 233 132 184 224 61 20 chr3 196108117 196108166 -31416412 - MIR SINE MIR -50 212 162 4315 142 89 103 chr3 196108556 196110095 -31414483 + pTR5 LTR ERV1 743 2438 0 221 255 0 20 chr3 196110271 196110322 -31414256 + CT-rich Low_complexity Low_complexity 2 51 0 637 203 46 7 chr3 196110521 196110674 -31413904 - MIR SINE MIR -24 238 80 1026 158 27 0 chr3 196111515 196111699 -31412879 - MER5A DNA MER1_type 0 189 1 197 354 96 15 chr3 196112061 196112321 -31412257 - L2 LINE L2 -572 2742 2462 239 200 167 0 chr3 196112408 196112468 -31412110 + MIR3 SINE MIR 108 177 -31 236 354 48 27 chr3 196112825 196112972 -31411606 + L2 LINE L2 3123 3272 0 24 53 0 0 chr3 196114011 196114049 -31410529 + AT_rich Low_complexity Low_complexity 1 38 0 2021 124 3 16 chr3 196114141 196114448 -31410130 - AluSc SINE Alu -6 303 1 22 88 0 0 chr3 196114710 196114767 -31409811 + AT_rich Low_complexity Low_complexity 1 57 0 2100 116 7 3 chr3 196115009 196115302 -31409276 + AluSx SINE Alu 1 294 -18 180 288 34 17 chr3 196115967 196116026 -31408552 + MIR SINE MIR 88 147 -115 2001 151 0 22 chr3 196117506 196117818 -31406760 + AluJb SINE Alu 1 305 -7 3975 151 5 27 chr3 196118863 196119629 -31404949 - L1P LINE L1 -1572 4574 3826 992 189 5 9 chr3 196119649 196119871 -31404707 + L1P LINE L1 3260 3480 -2666 1223 168 33 42 chr3 196120097 196120430 -31404148 + Charlie4a DNA MER1_type 179 508 0 2197 115 0 3 chr3 196120446 196120750 -31403828 + AluSx SINE Alu 1 303 -9 23 0 0 0 chr3 196120750 196120773 -31403805 + AT_rich Low_complexity Low_complexity 1 23 0 194 150 25 0 chr3 196122898 196122938 -31401640 + T-rich Low_complexity Low_complexity 2 42 0 265 313 77 39 chr3 196123780 196123962 -31400616 + L2 LINE L2 2862 3050 -222 191 241 103 0 chr3 196124386 196124444 -31400134 - MIR SINE MIR -62 146 83 * 345 289 99 8 chr3 196124437 196124558 -31400020 - L2 LINE L2 -2 3311 3180 1358 199 8 31 chr3 196124853 196125114 -31399464 - AluJo SINE Alu -55 257 3 544 250 111 11 chr3 196125927 196126107 -31398471 - MIR SINE MIR -59 203 6 207 269 39 0 chr3 196126735 196126787 -31397791 - MIR SINE MIR -6 256 203 1180 164 43 30 chr3 196126886 196127002 -31397576 + MER33 DNA MER1_type 1 103 -2482 2154 112 3 0 chr3 196127002 196127297 -31397281 + AluSg SINE Alu 1 296 -14 1180 164 43 30 chr3 196127297 196127486 -31397092 + MER33 DNA MER1_type 103 299 -25 189 262 71 0 chr3 196127813 196127855 -31396723 - L2 LINE L2 -37 3235 3191 1808 171 3 20 chr3 196128788 196129093 -31395485 + AluJb SINE Alu 1 300 -12 21 0 0 0 chr3 196129126 196129147 -31395431 + AT_rich Low_complexity Low_complexity 1 21 0 411 299 71 0 chr3 196129957 196130084 -31394494 - L2 LINE L2 0 3313 3178 268 221 25 55 chr3 196130534 196130697 -31393881 + T-rich Low_complexity Low_complexity 4 161 0 * 339 205 22 60 chr3 196130594 196130833 -31393745 + (TTTG)n Simple_repeat Simple_repeat 1 229 0 1298 96 0 56 chr3 196130952 196131150 -31393428 + AluSg/x SINE Alu 122 308 -4 865 246 130 58 chr3 196131151 196131513 -31393065 - L2 LINE L2 -661 2653 2266 189 276 19 86 chr3 196131576 196131681 -31392897 - L2 LINE L2 -963 2351 2254 183 261 100 89 chr3 196131692 196131872 -31392706 - L2 LINE L2 -905 2409 2228 327 284 59 96 chr3 196132031 196132334 -31392244 - L2 LINE L2 -950 2364 2073 877 101 16 23 chr3 196132464 196132593 -31391985 - AluSq/x SINE Alu -185 128 1 242 336 55 0 chr3 196133376 196133486 -31391092 + L2 LINE L2 3154 3269 -3 432 229 157 14 chr3 196134862 196135002 -31389576 + MIR SINE MIR 69 228 -34 792 194 7 7 chr3 196135045 196135189 -31389389 + FRAM SINE Alu 12 155 -21 1921 124 11 3 chr3 196135936 196136218 -31388360 - AluSx SINE Alu -13 299 16 261 310 69 69 chr3 196136444 196136618 -31387960 - MIR3 SINE MIR -14 194 21 860 215 27 89 chr3 196136946 196137173 -31387405 - L1MB7 LINE L1 -9 6175 5968 1398 22 0 17 chr3 196137173 196137354 -31387224 + (TTTC)n Simple_repeat Simple_repeat 1 178 0 860 215 27 89 chr3 196137354 196137419 -31387159 - L1MB7 LINE L1 -216 5968 5901 218 294 87 8 chr3 196137694 196137820 -31386758 + MIR SINE MIR 73 208 -54 591 129 52 9 chr3 196138961 196139077 -31385501 + AluSq/x SINE Alu 4 124 -188 403 255 195 43 chr3 196139199 196139474 -31385104 + L1 LINE L1 3030 3354 -2792 1655 83 0 28 chr3 196139474 196139727 -31384851 + L1PA6 LINE L1 5902 6147 -7 403 255 195 43 chr3 196139727 196139776 -31384802 + L1 LINE L1 3354 3394 -2752 23 54 0 0 chr3 196141060 196141097 -31383481 + AT_rich Low_complexity Low_complexity 1 37 0 309 234 103 41 chr3 196141188 196141333 -31383245 - L1MCa LINE L1 -4048 2378 2225 2281 153 13 13 chr3 196141483 196141876 -31382702 + L1PA16 LINE L1 5774 6166 0 2509 65 3 0 chr3 196141882 196142190 -31382388 + AluY SINE Alu 1 309 -2 414 248 62 0 chr3 196142190 196142303 -31382275 + Charlie7 DNA MER1_type 1031 1150 -1462 1166 271 39 10 chr3 196142339 196142727 -31381851 + MER20B DNA MER1_type 2 400 -383 262 202 179 24 chr3 196142913 196142997 -31381581 + MER5A DNA MER1_type 10 106 -83 1460 110 34 21 chr3 196144867 196145103 -31379475 - AluSc SINE Alu -8 301 63 187 385 0 0 chr3 196145342 196145394 -31379184 + L2 LINE L2 3122 3173 -99 209 234 64 0 chr3 196145839 196145886 -31378692 - MIR3 SINE MIR -46 162 113 285 228 35 0 chr3 196146393 196146450 -31378128 - L2 LINE L2 -5 3308 3250 27 62 0 0 chr3 196146597 196146645 -31377933 + AT_rich Low_complexity Low_complexity 1 48 0 409 306 15 15 chr3 196146720 196146926 -31377652 - AluSx SINE Alu -106 206 1 1749 192 25 8 chr3 196147066 196147420 -31377158 - MLT1A1 LTR MaLR 0 365 6 452 110 24 37 chr3 196147836 196147918 -31376660 - AluSc SINE Alu -5 304 224 559 316 83 5 chr3 196148269 196148487 -31376091 - MIR SINE MIR 0 262 28 803 224 7 7 chr3 196148582 196148734 -31375844 - FRAM SINE Alu -26 150 1 229 333 92 39 chr3 196151677 196151959 -31372619 + L3 LINE CR1 1129 1425 -152 187 316 18 18 chr3 196153933 196153990 -31370588 + MIR3 SINE MIR 14 70 -138 370 317 17 0 chr3 196154163 196154283 -31370295 - MIR SINE MIR -75 187 66 370 250 193 0 chr3 196154475 196154627 -31369951 + MER5A DNA MER1_type 4 189 0 1241 189 0 62 chr3 196156207 196156482 -31368096 + L1P LINE L1 3489 3746 -2400 380 296 31 62 chr3 196156557 196156783 -31367795 + MIR SINE MIR 9 227 -35 4054 165 25 7 chr3 196157471 196158197 -31366381 - L1MA9 LINE L1 -3 6309 5571 4278 57 0 0 chr3 196158197 196158686 -31365892 - L1PA6 LINE L1 0 6154 5662 2626 69 11 0 chr3 196158695 196159058 -31365520 - L1PA6 LINE L1 -763 5383 5017 1123 104 0 0 chr3 196159058 196159202 -31365376 + AluSg/x SINE Alu 148 291 -21 278 243 236 29 chr3 196159699 196159839 -31364739 + MIR SINE MIR 82 250 -12 394 316 32 19 chr3 196161863 196162021 -31362557 - MER5A DNA MER1_type -3 186 27 25 0 0 0 chr3 196163142 196163167 -31361411 + AT_rich Low_complexity Low_complexity 1 25 0 1726 180 0 17 chr3 196163347 196163647 -31360931 + AluJb SINE Alu 11 305 -7 339 136 0 0 chr3 196166815 196166874 -31357704 + (CA)n Simple_repeat Simple_repeat 2 60 0 345 202 121 20 chr3 196166949 196167048 -31357530 + MLT1K LTR MaLR 473 581 -7 2844 0 0 0 chr3 196167591 196167890 -31356688 + AluYa5 SINE Alu 10 308 -3 1891 127 0 31 chr3 196168409 196168725 -31355853 + AluSg SINE Alu 1 307 0 2310 116 0 0 chr3 196168725 196169035 -31355543 + AluSg SINE Alu 1 310 0 2285 108 16 0 chr3 196169769 196170076 -31354502 - AluSx SINE Alu 0 312 1 751 192 14 7 chr3 196170136 196170282 -31354296 + MLT1A1 LTR MaLR 11 157 -208 2259 94 13 38 chr3 196170283 196170601 -31353977 + AluSg SINE Alu 1 310 0 2510 65 0 3 chr3 196171320 196171627 -31352951 + AluY SINE Alu 1 306 -5 231 375 62 0 chr3 196171733 196171829 -31352749 + L2 LINE L2 3155 3256 -16 237 89 18 71 chr3 196172061 196172117 -31352461 + Alu SINE Alu 1 53 -246 493 229 0 0 chr3 196172271 196172376 -31352202 - L1 LINE L1 -1051 5095 4991 243 0 0 0 chr3 196172377 196172404 -31352174 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 2298 160 0 22 chr3 196172545 196172946 -31351632 - L1 LINE L1 -1137 5009 4618 1344 219 70 9 chr3 196173627 196173942 -31350636 - MER46C DNA MER2_type -4 334 1 2352 241 55 47 chr3 196174033 196174620 -31349958 - Charlie7 DNA MER1_type -560 2052 1454 3098 184 10 8 chr3 196174620 196175137 -31349441 - MLT2B1 LTR ERVL 0 520 3 2352 241 55 47 chr3 196175137 196175413 -31349165 - Charlie7 DNA MER1_type -1158 1454 1182 631 226 161 4 chr3 196175413 196175643 -31348935 - MER20B DNA MER1_type 0 783 518 2048 123 11 0 chr3 196175679 196175964 -31348614 + AluSx SINE Alu 3 290 -22 356 264 271 7 chr3 196176004 196176144 -31348434 - MER5A DNA MER1_type -3 186 10 290 170 0 0 chr3 196176242 196176289 -31348289 - MER46C DNA MER2_type -212 126 80 1327 271 39 10 chr3 196176330 196176718 -31347860 - MER20B DNA MER1_type -383 400 2 618 247 94 47 chr3 196176751 196176867 -31347711 - Charlie7 DNA MER1_type -1459 1153 1044 2721 39 0 0 chr3 196176867 196177176 -31347402 - AluY SINE Alu -2 309 1 618 247 94 47 chr3 196177176 196177294 -31347284 - Charlie7 DNA MER1_type -1568 1044 908 228 198 167 10 chr3 196177297 196177393 -31347185 - Charlie7 DNA MER1_type -2441 171 61 187 360 45 27 chr3 196178828 196178939 -31345639 + L3 LINE CR1 52 164 -1413 344 331 41 8 chr3 196179010 196179131 -31345447 - L2 LINE L2 -5 3308 3184 556 343 39 42 chr3 196179790 196180149 -31344429 - L2 LINE L2 -2520 794 437 2461 184 24 77 chr3 196181380 196181963 -31342615 - MLT2B3 LTR ERVL -1 553 2 370 322 57 47 chr3 196182864 196183441 -31341137 + L1ME4a LINE L1 5316 5898 -223 2248 95 7 3 chr3 196183854 196184160 -31340418 + AluY SINE Alu 1 307 -4 414 220 135 14 chr3 196185322 196185463 -31339115 + L1ME4a LINE L1 5960 6117 -4 204 368 38 0 chr3 196185489 196185595 -31338983 + L3 LINE CR1 298 407 -1170 987 295 147 17 chr3 196185626 196186097 -31338481 + L3 LINE CR1 516 1047 -530 432 130 0 0 chr3 196186742 196186811 -31337767 + (TTCC)n Simple_repeat Simple_repeat 2 70 0 2446 139 11 5 chr3 196187633 196188014 -31336564 + L1MA5A LINE L1 5905 6287 -10 22 0 0 0 chr3 196188089 196188111 -31336467 + AT_rich Low_complexity Low_complexity 1 22 0 2238 88 9 35 chr3 196188112 196188429 -31336149 + AluSc SINE Alu 1 309 0 21 36 0 0 chr3 196188489 196188517 -31336061 + AT_rich Low_complexity Low_complexity 1 28 0 2271 112 0 3 chr3 196189688 196189992 -31334586 + AluSx SINE Alu 1 303 -9 219 279 59 0 chr3 196191500 196191568 -31333010 + MIR3 SINE MIR 130 201 -7 757 187 8 0 chr3 196192621 196192744 -31331834 + FLAM_C SINE Alu 7 130 -13 227 56 56 0 chr3 196192796 196192832 -31331746 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 638 246 180 35 chr3 196192834 196193118 -31331460 - L2 LINE L2 -1 3312 2988 2390 107 0 0 chr3 196193220 196193530 -31331048 + AluSg SINE Alu 1 310 0 396 296 43 9 chr3 196194180 196194295 -31330283 - MIR3 SINE MIR -9 199 81 396 299 58 7 chr3 196194767 196194904 -31329674 + MIR SINE MIR 17 160 -102 201 290 19 37 chr3 196195359 196195466 -31329112 + CT-rich Low_complexity Low_complexity 5 109 0 1635 144 18 42 chr3 196196382 196196666 -31327912 + AluJo SINE Alu 13 289 -23 312 249 31 29 chr3 196196679 196196864 -31327714 - L1MC4 LINE L1 -8 7815 7613 * 492 241 163 19 chr3 196196842 196197276 -31327302 - L1MC3 LINE L1 -279 7506 7044 293 253 59 129 chr3 196198608 196198778 -31325800 - L2 LINE L2 -8 3264 3107 591 286 22 49 chr3 196199133 196199357 -31325221 - MIR SINE MIR -32 230 13 2268 104 0 0 chr3 196201433 196201730 -31322848 + AluSg SINE Alu 1 297 -13 229 301 12 0 chr3 196202181 196202264 -31322314 + MER112 DNA MER1_type 2 85 -175 334 186 98 20 chr3 196202328 196202430 -31322148 + MER112 DNA MER1_type 80 189 -71 182 288 150 25 chr3 196202576 196202656 -31321922 - MIR3 SINE MIR -49 159 70 204 387 36 0 chr3 196202695 196202832 -31321746 + MIR3 SINE MIR 21 162 -46 1462 247 29 77 chr3 196203066 196203585 -31320993 + L2 LINE L2 2820 3313 0 2051 158 47 37 chr3 196204509 196204989 -31319589 - MER31A LTR ERV1 0 661 1 224 315 65 74 chr3 196204999 196205215 -31319363 + L2 LINE L2 2305 2518 -796 * 667 211 157 0 chr3 196205170 196205317 -31319261 - MER5A DNA MER1_type -6 183 14 275 242 32 32 chr3 196205492 196205587 -31318991 - MER112 DNA MER1_type -16 244 150 417 188 0 0 chr3 196205588 196205673 -31318905 + (AATAG)n Simple_repeat Simple_repeat 5 89 0 495 212 171 41 chr3 196206423 196206593 -31317985 + MIR SINE MIR 71 262 0 217 329 25 25 chr3 196206588 196206667 -31317911 + L2 LINE L2 3194 3272 0 * 204 158 0 0 chr3 196207834 196207872 -31316706 + (TG)n Simple_repeat Simple_repeat 2 39 0 2319 108 0 0 chr3 196209213 196209508 -31315070 - AluSx SINE Alu -17 295 1 611 255 153 0 chr3 196209835 196209992 -31314586 - MER5A DNA MER1_type 0 189 9 1127 129 28 0 chr3 196210165 196210343 -31314235 + L1PA11 LINE L1 5992 6174 0 311 250 31 70 chr3 196210904 196211032 -31313546 + L2 LINE L2 3191 3313 0 3601 152 58 4 chr3 196211122 196211847 -31312731 + L1MA9 LINE L1 4075 4838 -1308 2613 113 63 18 chr3 196211848 196212337 -31312241 + MER4B-int LTR ERV1 2109 2619 -4139 1000 137 0 27 chr3 196212338 196212484 -31312094 + AluSq/x SINE Alu 1 142 -170 290 244 23 47 chr3 196212491 196212577 -31312001 - L2 LINE L2 0 3272 3189 600 133 29 0 chr3 196212580 196212685 -31311893 - MER4B-int LTR ERV1 -4022 2736 2629 * 1711 144 52 32 chr3 196212665 196213034 -31311544 + MER4B-int LTR ERV1 2720 3095 -3663 * 3942 151 25 3 chr3 196213020 196213674 -31310904 + MER4B-int LTR ERV1 3421 4088 -2670 3565 111 20 9 chr3 196213673 196214233 -31310345 + MER4B-int LTR ERV1 4452 5017 -1741 * 2424 169 16 16 chr3 196214233 196214995 -31309583 + L1MA9 LINE L1 4824 5587 -725 * 5602 67 12 8 chr3 196214994 196215816 -31308762 + L1PA6 LINE L1 4559 5383 -763 3929 65 0 0 chr3 196215825 196216318 -31308260 + L1PA6 LINE L1 5662 6154 0 3689 165 25 7 chr3 196216318 196217040 -31307538 + L1MA9 LINE L1 5571 6309 -3 1756 190 0 16 chr3 196217226 196217536 -31307042 - AluJb SINE Alu -7 305 1 25 0 0 0 chr3 196217706 196217731 -31306847 + AT_rich Low_complexity Low_complexity 1 25 0 399 316 32 19 chr3 196218852 196219010 -31305568 + MER5A DNA MER1_type 27 186 -3 279 243 236 29 chr3 196221037 196221177 -31303401 - MIR SINE MIR -12 250 82 2299 96 0 0 chr3 196221672 196221963 -31302615 - AluSx SINE Alu -21 291 1 2045 103 39 4 chr3 196222878 196223159 -31301419 - AluSc SINE Alu -18 291 1 241 375 62 0 chr3 196223391 196223487 -31301091 - L2 LINE L2 -16 3256 3155 2355 78 0 7 chr3 196223593 196223901 -31300677 - AluY SINE Alu -5 306 1 2258 94 13 38 chr3 196224620 196224938 -31299640 - AluSg SINE Alu 0 310 1 224 165 33 187 chr3 196225110 196225201 -31299377 - MER91C DNA MER1_type -30 110 34 232 262 98 0 chr3 196225250 196225311 -31299267 + MIR3 SINE MIR 93 159 -49 29 28 0 0 chr3 196225434 196225470 -31299108 + AT_rich Low_complexity Low_complexity 1 36 0 1985 112 46 23 chr3 196225851 196226156 -31298422 + AluSx SINE Alu 1 312 0 423 217 0 0 chr3 196226183 196226289 -31298289 + (TA)n Simple_repeat Simple_repeat 1 106 0 1027 142 31 12 chr3 196226289 196226451 -31298127 - AluJo SINE Alu -27 285 121 1926 141 3 0 chr3 196226649 196226933 -31297645 + AluSx SINE Alu 14 298 -14 2306 88 0 3 chr3 196227060 196227357 -31297221 - AluSg SINE Alu -14 296 1 282 268 45 103 chr3 196227710 196227772 -31296806 - L2 LINE L2 -9 3304 3240 1456 229 36 12 chr3 196227772 196228104 -31296474 + MER58B DNA MER1_type 1 340 -1 282 268 45 103 chr3 196228104 196228284 -31296294 - L2 LINE L2 -73 3240 3076 480 307 60 33 chr3 196228554 196228769 -31295809 + MIR SINE MIR 32 252 -10 22 0 0 0 chr3 196229359 196229381 -31295197 + AT_rich Low_complexity Low_complexity 1 22 0 22 111 0 0 chr3 196229397 196229496 -31295082 + AT_rich Low_complexity Low_complexity 1 99 0 238 262 33 0 chr3 196229742 196229803 -31294775 - L3 LINE CR1 -6 1571 1509 202 279 38 38 chr3 196229838 196229917 -31294661 - L3 LINE CR1 -151 1426 1348 528 184 250 20 chr3 196229968 196230120 -31294458 + MER5A DNA MER1_type 1 187 -2 207 278 170 52 chr3 196230146 196230340 -31294238 + MIR SINE MIR 28 244 -18 372 279 0 0 chr3 196230476 196230555 -31294023 - MIR3 SINE MIR -53 155 77 262 286 186 0 chr3 196232562 196232632 -31291946 + MER91C DNA MER1_type 51 133 -63 249 329 174 13 chr3 196232841 196232996 -31291582 - MER91A DNA MER1_type -3 193 14 26 0 0 0 chr3 196234650 196234676 -31289902 + AT_rich Low_complexity Low_complexity 1 26 0 2383 113 0 0 chr3 196234792 196235102 -31289476 + AluSq SINE Alu 2 311 -2 242 345 0 0 chr3 196235246 196235301 -31289277 + MIR SINE MIR 96 150 -58 189 185 19 93 chr3 196236308 196236362 -31288216 - L2 LINE L2 0 3313 3264 262 236 0 69 chr3 196236399 196236471 -31288107 + MIR SINE MIR 30 96 -112 273 255 43 53 chr3 196236957 196237051 -31287527 + MIR3 SINE MIR 115 207 -1 1120 163 169 36 chr3 196237746 196238047 -31286531 + MER2 DNA MER2_type 1 341 -3 723 305 68 56 chr3 196238060 196238588 -31285990 - L2 LINE L2 0 3272 2741 185 315 17 65 chr3 196238737 196238978 -31285600 + L2 LINE L2 2979 3233 -80 183 80 0 0 chr3 196239032 196239057 -31285521 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 861 264 122 30 chr3 196239124 196239634 -31284944 + MLT1H1 LTR MaLR 1 590 0 335 318 118 0 chr3 196239675 196239785 -31284793 - MIR3 SINE MIR -71 137 15 445 274 111 37 chr3 196240860 196241130 -31283448 - MLT1K LTR MaLR 0 588 299 360 372 87 38 chr3 196241336 196241743 -31282835 + L2 LINE L2 1708 2145 -1169 2317 113 3 3 chr3 196241743 196242052 -31282526 - AluSp SINE Alu -4 309 1 360 372 87 38 chr3 196242052 196242141 -31282437 + L2 LINE L2 2145 2228 -1086 837 293 47 20 chr3 196242827 196243124 -31281454 + MLT1I LTR MaLR 41 345 -64 1812 190 0 3 chr3 196243143 196243443 -31281135 + AluJb SINE Alu 3 301 -11 23 0 0 0 chr3 196243443 196243466 -31281112 + AT_rich Low_complexity Low_complexity 1 23 0 1318 262 47 15 chr3 196243469 196243870 -31280708 + LTR52 LTR ERVL 6 419 -2 381 268 0 0 chr3 196243912 196244024 -31280554 + L1ME3A LINE L1 6029 6140 -30 1556 142 93 32 chr3 196244033 196244343 -31280235 + MER44D DNA MER2_type 8 606 -3 5626 86 5 0 chr3 196244521 196245333 -31279245 - L1PA14 LINE L1 0 6161 5346 2047 250 71 7 chr3 196245515 196246508 -31278070 - L1ME3A LINE L1 -192 5978 4925 5232 181 39 16 chr3 196246777 196247803 -31276775 - L1M1 LINE L1 -6499 1066 17 249 297 133 18 chr3 196249549 196249716 -31274862 + MIR SINE MIR 64 247 -15 225 262 69 90 chr3 196250247 196250392 -31274186 - L2 LINE L2 -3 3310 3169 315 0 0 0 chr3 196250707 196250742 -31273836 + (CA)n Simple_repeat Simple_repeat 1 35 0 322 220 20 10 chr3 196250858 196250958 -31273620 + CT-rich Low_complexity Low_complexity 3 103 0 211 273 0 0 chr3 196251449 196251493 -31273085 + polypurine Low_complexity Low_complexity 5 48 0 235 167 30 0 chr3 196252406 196252472 -31272106 + CT-rich Low_complexity Low_complexity 2 69 0 357 392 20 7 chr3 196254384 196254537 -31270041 + L2 LINE L2 3118 3272 0 360 0 0 0 chr3 196254740 196254780 -31269798 + (T)n Simple_repeat Simple_repeat 1 40 0 557 239 136 17 chr3 196255554 196255730 -31268848 - MIR SINE MIR 0 262 66 233 250 18 0 chr3 196255978 196256034 -31268544 - tRNA-Gln-CAG tRNA tRNA -14 61 5 1893 156 3 23 chr3 196256165 196256473 -31268105 + AluJb SINE Alu 7 308 -4 2052 140 0 0 chr3 196256751 196257059 -31267519 + AluSx SINE Alu 1 308 -4 353 327 128 11 chr3 196258393 196258659 -31265919 - L2 LINE L2 -562 2752 2456 23 68 0 0 chr3 196259553 196259597 -31264981 + AT_rich Low_complexity Low_complexity 1 44 0 3922 124 60 32 chr3 196260103 196260265 -31264313 - L1MA5 LINE L1 -2 6298 6142 2313 109 0 0 chr3 196260265 196260559 -31264019 + AluSq SINE Alu 1 294 -19 3922 124 60 32 chr3 196260559 196260910 -31263668 - L1MA5 LINE L1 -158 6142 5755 2139 125 143 8 chr3 196260910 196261287 -31263291 - MSTA LTR MaLR 0 428 1 3922 124 60 32 chr3 196261287 196261500 -31263078 - L1MA5 LINE L1 -545 5755 5550 248 301 21 43 chr3 196261806 196261899 -31262679 - MIR SINE MIR -67 141 51 2121 86 4 0 chr3 196262599 196262866 -31261712 - AluY SINE Alu -43 268 1 4470 115 88 53 chr3 196263207 196264001 -31260577 - LTR12 LTR ERV1 0 826 5 1829 197 52 42 chr3 196264017 196264615 -31259963 - pTR5 LTR ERV1 -1094 1344 741 1796 120 58 19 chr3 196265429 196265754 -31258824 + MER44D DNA MER2_type 1 608 -1 4496 227 89 35 chr3 196265767 196266727 -31257851 - L1MB7 LINE L1 -24 6160 5254 1803 176 10 10 chr3 196266727 196267034 -31257544 - AluJo SINE Alu -5 307 1 4496 227 89 35 chr3 196267034 196267236 -31257342 - L1MB7 LINE L1 -930 5254 5064 783 228 29 18 chr3 196267236 196267407 -31257171 - FAM SINE Alu -2 173 1 4496 227 89 35 chr3 196267407 196268997 -31255581 - L1MB7 LINE L1 -1120 5064 3253 2121 122 3 0 chr3 196269351 196269646 -31254932 + AluSx SINE Alu 1 296 -16 2038 122 3 26 chr3 196269987 196270154 -31254424 - AluSx SINE Alu -15 297 139 2398 47 40 0 chr3 196270154 196270453 -31254125 - AluY SINE Alu 0 311 1 2038 122 3 26 chr3 196270453 196270589 -31253989 - AluSx SINE Alu -173 139 1 825 252 75 39 chr3 196270775 196271029 -31253549 + LTR16A LTR ERVL 177 439 -11 346 271 66 90 chr3 196271140 196271428 -31253150 + MLT1J LTR MaLR 1 281 -230 302 0 26 0 chr3 196271874 196271912 -31252666 + (TG)n Simple_repeat Simple_repeat 2 40 0 2054 119 60 0 chr3 196273276 196273561 -31251017 + AluSx SINE Alu 1 302 -10 1141 240 19 11 chr3 196273604 196273966 -31250612 + L1ME1 LINE L1 4957 5321 -825 720 297 87 20 chr3 196274074 196274351 -31250227 + L1ME1 LINE L1 5483 5795 -367 1903 107 89 0 chr3 196274351 196274621 -31249957 - AluSx SINE Alu -18 294 1 720 297 87 20 chr3 196274621 196274734 -31249844 + L1ME1 LINE L1 5795 5899 -263 475 318 108 0 chr3 196274801 196275015 -31249563 - LTR16B LTR ERVL -95 369 133 586 260 86 2 chr3 196275181 196275416 -31249162 + L1ME1 LINE L1 5900 6164 -2 1388 239 41 41 chr3 196275652 196275997 -31248581 - MLT1J LTR MaLR -6 505 158 2195 115 0 0 chr3 196275997 196276292 -31248286 - AluSx SINE Alu -4 308 14 1388 239 41 41 chr3 196276292 196276340 -31248238 - MLT1J LTR MaLR -352 159 112 2280 109 0 16 chr3 196276786 196277097 -31247481 + AluSg SINE Alu 1 306 -4 1254 71 6 6 chr3 196277113 196277295 -31247283 + L1MA3 LINE L1 5648 5829 -476 839 193 6 0 chr3 196277306 196277472 -31247106 + L1PB1 LINE L1 1 167 -6696 5050 123 21 6 chr3 196277486 196278357 -31246221 + L1PB1 LINE L1 1392 2275 -4588 525 103 0 0 chr3 196278357 196278435 -31246143 + AluSp/q SINE Alu 230 307 -6 14487 180 12 12 chr3 196278438 196282546 -31242032 + L1PB1 LINE L1 2346 6453 -414 2226 107 0 0 chr3 196282546 196282835 -31241743 + AluSx SINE Alu 10 298 -14 14487 180 12 12 chr3 196282835 196283250 -31241328 + L1PB1 LINE L1 6453 6866 -1 2613 118 73 19 chr3 196283316 196283783 -31240795 + L1MA3 LINE L1 5814 6305 0 356 323 13 26 chr3 196283930 196284162 -31240416 + HAL1b LINE L1 245 473 -875 1548 209 48 48 chr3 196284824 196285287 -31239291 - MER31A LTR ERV1 -6 479 17 1620 165 3 100 chr3 196285592 196285932 -31238646 + AluJo SINE Alu 1 307 -5 1515 159 28 104 chr3 196285958 196286152 -31238426 + MLT1A1 LTR MaLR 1 151 -214 2196 84 3 0 chr3 196286152 196286438 -31238140 - AluSp SINE Alu -22 291 5 1515 159 28 104 chr3 196286438 196286638 -31237940 + MLT1A1 LTR MaLR 151 365 0 215 315 0 0 chr3 196286876 196286930 -31237648 + MER5B DNA MER1_type 1 54 -124 2129 120 10 0 chr3 196286941 196287241 -31237337 + AluSg SINE Alu 1 303 -7 683 226 8 15 chr3 196287257 196287390 -31237188 - MER5B DNA MER1_type -45 133 2 860 206 6 18 chr3 196287499 196287669 -31236909 + FAM SINE Alu 5 172 -3 389 290 46 55 chr3 196287773 196287990 -31236588 + HAL1b LINE L1 614 828 -520 369 280 51 34 chr3 196288289 196288464 -31236114 + L1ME4a LINE L1 5943 6120 -1 2412 94 0 3 chr3 196290033 196290340 -31234238 + AluSp SINE Alu 2 307 -6 292 302 86 9 chr3 196291117 196291233 -31233345 - L2 LINE L2 -4 3268 3144 209 289 150 39 chr3 196291232 196291412 -31233166 + L2 LINE L2 2861 3060 -212 * 954 168 54 11 chr3 196291485 196291670 -31232908 - MER46A DNA MER2_type 0 236 44 404 226 6 96 chr3 196291775 196291952 -31232626 + L2 LINE L2 3153 3313 0 723 286 64 5 chr3 196293188 196293408 -31231170 - MIR SINE MIR -2 260 28 1874 87 31 12 chr3 196293936 196294190 -31230388 + AluSx SINE Alu 38 296 -16 2192 116 3 3 chr3 196295620 196295931 -31228647 - AluSx SINE Alu -1 311 1 186 128 0 0 chr3 196297515 196297554 -31227024 + (T)n Simple_repeat Simple_repeat 1 39 0 323 206 65 43 chr3 196298600 196298692 -31225886 - MER5A DNA MER1_type -82 107 14 230 228 49 89 chr3 196299068 196299191 -31225387 - L1MC4 LINE L1 -21 8021 7904 22 88 0 0 chr3 196299200 196299257 -31225321 + AT_rich Low_complexity Low_complexity 1 57 0 180 304 0 54 chr3 196299907 196299963 -31224615 - L2 LINE L2 -79 3234 3182 400 255 11 0 chr3 196300250 196300344 -31224234 - MER5A DNA MER1_type -86 103 9 831 116 0 0 chr3 196300397 196300518 -31224060 - AluSp/q SINE Alu -6 307 187 235 62 0 0 chr3 196300542 196300574 -31224004 + (TTTG)n Simple_repeat Simple_repeat 2 176 0 2045 106 3 34 chr3 196300574 196300867 -31223711 - AluSp SINE Alu -29 284 1 342 214 150 57 chr3 196300875 196301015 -31223563 + MIR SINE MIR 50 202 -60 301 180 0 0 chr3 196301577 196301627 -31222951 - MIR SINE MIR -66 142 93 2117 129 0 3 chr3 196302383 196302685 -31221893 - AluSx SINE Alu -11 301 1 908 118 14 21 chr3 196302776 196302920 -31221658 - L1MA3 LINE L1 0 6305 6163 2220 59 46 52 chr3 196302933 196303238 -31221340 - AluY SINE Alu -8 303 1 9022 173 19 25 chr3 196303238 196303480 -31221098 - L1P LINE L1 -1584 4562 4320 2776 7 0 3 chr3 196303480 196303782 -31220796 - AluYa5 SINE Alu -10 301 1 9022 173 19 25 chr3 196303782 196305356 -31219222 - L1P LINE L1 -1826 4320 2757 195 250 94 62 chr3 196305366 196305494 -31219084 + L2 LINE L2 3174 3305 -8 2252 103 36 0 chr3 196306017 196306319 -31218259 - AluSq SINE Alu 0 313 1 986 227 61 5 chr3 196306708 196306906 -31217672 + MER63A DNA MER1_type 1 209 -1 1792 213 137 30 chr3 196308167 196308272 -31216306 - L1ME2 LINE L1 -13 6151 6059 1957 118 0 64 chr3 196308272 196308586 -31215992 - AluSx SINE Alu -18 294 1 1792 213 137 30 chr3 196308586 196308983 -31215595 - L1ME2 LINE L1 -105 6059 5595 308 246 23 88 chr3 196308996 196309211 -31215367 - L1MC4 LINE L1 -1 8041 7841 1911 167 7 0 chr3 196309221 196309514 -31215064 + AluJb SINE Alu 1 295 -17 1041 226 79 27 chr3 196309524 196309886 -31214692 - L1ME2 LINE L1 -799 5347 4978 951 141 20 45 chr3 196309886 196310085 -31214493 - L1MA9 LINE L1 0 6312 6119 216 0 0 0 chr3 196311109 196311133 -31213445 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 717 180 0 0 chr3 196311133 196311244 -31213334 - FLAM_C SINE Alu -21 122 12 234 0 0 0 chr3 196312466 196312492 -31212086 + (A)n Simple_repeat Simple_repeat 1 26 0 1870 198 59 43 chr3 196314187 196314647 -31209931 - MLT1C LTR MaLR 0 467 1 188 283 22 0 chr3 196314848 196314894 -31209684 - MIR SINE MIR -12 250 204 2177 126 0 10 chr3 196314953 196315262 -31209316 + AluSg SINE Alu 1 306 -4 478 315 35 0 chr3 196315329 196315472 -31209106 - MIR3 SINE MIR -45 163 16 243 333 65 0 chr3 196315695 196315788 -31208790 - L2 LINE L2 -40 3232 3134 2142 123 3 10 chr3 196315810 196316112 -31208466 - AluSq SINE Alu -13 300 1 2311 97 0 3 chr3 196317527 196317835 -31206743 + AluSg SINE Alu 1 307 -3 192 77 0 0 chr3 196317836 196317862 -31206716 + (GGAA)n Simple_repeat Simple_repeat 4 29 0 396 0 0 0 chr3 196318393 196318437 -31206141 + (TG)n Simple_repeat Simple_repeat 2 45 0 192 281 114 61 chr3 196318502 196318616 -31205962 + MIR3 SINE MIR 14 133 -75 2386 106 0 0 chr3 196318919 196319231 -31205347 + AluSx SINE Alu 1 312 0 213 371 234 8 chr3 196319584 196319708 -31204870 - L2 LINE L2 -10 3262 3111 318 285 66 27 chr3 196319976 196320128 -31204450 - MIR SINE MIR -56 152 50 21 0 0 0 chr3 196320164 196320185 -31204393 + AT_rich Low_complexity Low_complexity 1 21 0 2072 131 0 26 chr3 196320289 196320594 -31203984 + AluSx SINE Alu 1 297 -15 2242 104 10 0 chr3 196321000 196321309 -31203269 + AluSp SINE Alu 1 312 -1 228 111 0 0 chr3 196321309 196321345 -31203233 + (TA)n Simple_repeat Simple_repeat 1 36 0 621 261 68 31 chr3 196321361 196321583 -31202995 + MIR SINE MIR 8 237 -25 3515 155 54 19 chr3 196321710 196322395 -31202183 + L1MB7 LINE L1 5455 6163 -21 212 253 154 11 chr3 196322569 196322660 -31201918 + MER5C DNA MER1_type 6 109 -215 215 196 143 0 chr3 196322796 196322852 -31201726 + MER5C DNA MER1_type 261 324 0 2335 48 3 14 chr3 196322885 196323174 -31201404 + AluY SINE Alu 21 306 -5 1922 129 4 4 chr3 196323473 196323745 -31200833 - AluSx SINE Alu -27 285 14 1018 142 31 12 chr3 196323942 196324104 -31200474 + AluJo SINE Alu 121 285 -27 423 217 0 0 chr3 196324104 196324210 -31200368 + (TA)n Simple_repeat Simple_repeat 1 106 0 1979 112 46 23 chr3 196324237 196324542 -31200036 - AluSx SINE Alu 0 312 1 493 229 0 0 chr3 196325150 196325255 -31199323 - L1 LINE L1 -1051 5095 4991 243 0 0 0 chr3 196325256 196325283 -31199295 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 2298 160 0 22 chr3 196325424 196325825 -31198753 - L1 LINE L1 -1137 5009 4618 1344 219 70 9 chr3 196326506 196326821 -31197757 - MER46C DNA MER2_type -4 334 1 2352 241 55 47 chr3 196326912 196327499 -31197079 - Charlie7 DNA MER1_type -560 2052 1454 3098 184 10 8 chr3 196327499 196328016 -31196562 - MLT2B1 LTR ERVL 0 520 3 2352 241 55 47 chr3 196328016 196328292 -31196286 - Charlie7 DNA MER1_type -1158 1454 1182 631 226 161 4 chr3 196328292 196328522 -31196056 - MER20B DNA MER1_type 0 783 518 2115 119 7 0 chr3 196328558 196328844 -31195734 + AluSx SINE Alu 3 290 -22 356 264 271 7 chr3 196328884 196329024 -31195554 - MER5A DNA MER1_type -3 186 10 290 170 0 0 chr3 196329122 196329169 -31195409 - MER46C DNA MER2_type -212 126 80 1327 271 39 10 chr3 196329210 196329598 -31194980 - MER20B DNA MER1_type -383 400 2 463 250 60 0 chr3 196329631 196329747 -31194831 - Charlie7 DNA MER1_type -1459 1153 1031 2344 88 7 0 chr3 196329747 196330054 -31194524 - AluY SINE Alu -2 309 1 751 192 14 7 chr3 196330055 196330201 -31194377 - MLT1A1 LTR MaLR -208 157 11 2285 108 16 0 chr3 196330261 196330568 -31194010 + AluSx SINE Alu 1 312 0 2347 103 0 0 chr3 196331302 196331612 -31192966 - AluSg SINE Alu 0 310 1 183 42 0 0 chr3 196331612 196331636 -31192942 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 1890 127 0 31 chr3 196331636 196331928 -31192650 - AluSg SINE Alu -27 283 1 2616 21 0 0 chr3 196332462 196332744 -31191834 - AluYa5 SINE Alu -20 291 10 345 202 121 20 chr3 196333287 196333386 -31191192 - MLT1K LTR MaLR -7 581 473 393 102 0 0 chr3 196333465 196333524 -31191054 + (TG)n Simple_repeat Simple_repeat 2 60 0 1502 137 82 0 chr3 196335079 196335335 -31189243 + AluJb SINE Alu 1 277 -35 519 254 133 0 chr3 196335638 196335803 -31188775 - MIR3 SINE MIR -7 201 15 1362 102 31 44 chr3 196336154 196336379 -31188199 + AluSc SINE Alu 88 309 0 21 36 0 0 chr3 196336439 196336467 -31188111 + AT_rich Low_complexity Low_complexity 1 28 0 2271 112 0 3 chr3 196337640 196337944 -31186634 + AluSx SINE Alu 1 303 -9 219 279 59 0 chr3 196339452 196339520 -31185058 + MIR3 SINE MIR 130 201 -7 757 187 8 0 chr3 196340573 196340696 -31183882 + FLAM_C SINE Alu 7 130 -13 227 56 56 0 chr3 196340748 196340784 -31183794 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 638 246 180 35 chr3 196340786 196341070 -31183508 - L2 LINE L2 -1 3312 2988 2390 107 0 0 chr3 196341172 196341482 -31183096 + AluSg SINE Alu 1 310 0 396 296 43 9 chr3 196342132 196342247 -31182331 - MIR3 SINE MIR -9 199 81 396 299 58 7 chr3 196342719 196342856 -31181722 + MIR SINE MIR 17 160 -102 201 290 19 37 chr3 196343310 196343417 -31181161 + CT-rich Low_complexity Low_complexity 5 109 0 1670 156 16 42 chr3 196344333 196344641 -31179937 + AluJo SINE Alu 13 312 0 830 197 31 45 chr3 196344641 196344864 -31179714 + MLT1A1 LTR MaLR 146 365 0 816 153 40 27 chr3 196344866 196345016 -31179562 + MLT1A1-int LTR MaLR 20 171 -1564 348 270 0 22 chr3 196345336 196345425 -31179153 + L2 LINE L2 3184 3270 -2 1263 228 34 7 chr3 196346142 196346436 -31178142 - AluJo SINE Alu -9 303 2 1910 112 48 4 chr3 196346904 196347172 -31177406 + AluSx SINE Alu 1 280 -32 225 0 0 0 chr3 196347176 196347201 -31177377 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1374 338 151 19 chr3 196347204 196348906 -31175672 - L2 LINE L2 -20 3252 1322 254 309 115 7 chr3 196349687 196349826 -31174752 - MIR SINE MIR -89 173 20 517 285 22 0 chr3 196350019 196350156 -31174422 + MER20B DNA MER1_type 40 179 -604 2028 189 141 27 chr3 196350202 196350683 -31173895 + MLT1F LTR MaLR 3 538 -4 438 20 0 0 chr3 196350715 196350766 -31173812 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 289 338 179 7 chr3 196350983 196351128 -31173450 + MER91A DNA MER1_type 1 170 -26 2096 204 23 50 chr3 196351131 196351611 -31172967 - MLT1C LTR MaLR 0 467 1 231 368 60 8 chr3 196353190 196353307 -31171271 + MIR SINE MIR 21 143 -65 559 217 150 0 chr3 196353813 196353969 -31170609 + MER5A DNA MER1_type 6 188 -1 252 0 0 0 chr3 196354266 196354294 -31170284 + (CA)n Simple_repeat Simple_repeat 2 29 0 223 235 39 0 chr3 196354298 196354349 -31170229 - L2 LINE L2 -3 3269 3217 2346 93 0 0 chr3 196355180 196355471 -31169107 + AluSg1 SINE Alu 1 291 -18 2165 125 3 0 chr3 196356427 196356723 -31167855 + AluSp SINE Alu 1 297 -16 2305 52 0 21 chr3 196356944 196357290 -31167288 - AluY SINE Alu 0 340 1 402 323 0 16 chr3 196357307 196357431 -31167147 + L2 LINE L2 3149 3270 -2 * 538 283 89 36 chr3 196357414 196357661 -31166917 - L2 LINE L2 0 3313 3054 1042 293 27 29 chr3 196357665 196358075 -31166503 + LTR16A LTR ERVL 13 421 -29 2109 107 11 0 chr3 196358102 196358409 -31166169 - AluSx SINE Alu 0 310 1 1152 283 112 9 chr3 196358425 196358852 -31165726 - L2 LINE L2 -998 2316 1846 280 278 14 0 chr3 196358955 196359027 -31165551 + L2 LINE L2 3241 3313 0 386 293 16 52 chr3 196360247 196360374 -31164204 + L1MC4 LINE L1 7170 7290 -752 2106 112 0 11 chr3 196360374 196360695 -31163883 - AluSx SINE Alu 0 318 1 386 293 16 52 chr3 196360695 196360757 -31163821 + L1MC4 LINE L1 7290 7353 -689 235 287 52 57 chr3 196360827 196361057 -31163521 - L1MC/D LINE L1 -1904 5904 5676 29 28 0 0 chr3 196361115 196361151 -31163427 + AT_rich Low_complexity Low_complexity 1 36 0 365 346 58 55 chr3 196361151 196361498 -31163080 - L1MC/D LINE L1 -2205 5603 5256 783 246 46 39 chr3 196361764 196361878 -31162700 - L1MB7 LINE L1 -7 6177 6065 2225 130 0 0 chr3 196361878 196362178 -31162400 - AluSq SINE Alu -13 300 1 783 246 46 39 chr3 196362178 196362368 -31162210 - L1MB7 LINE L1 -119 6065 5871 402 21 0 0 chr3 196362368 196362415 -31162163 + (TTA)n Simple_repeat Simple_repeat 2 48 0 720 231 74 69 chr3 196362422 196362476 -31162102 - MLT1C LTR MaLR 0 471 419 2238 100 0 7 chr3 196362476 196362785 -31161793 + AluSc SINE Alu 1 307 -2 720 231 74 69 chr3 196362785 196362991 -31161587 - MLT1C LTR MaLR -52 419 240 2427 123 17 3 chr3 196362991 196363350 -31161228 - THE1B LTR MaLR 0 364 1 720 231 74 69 chr3 196363350 196363507 -31161071 - MLT1C LTR MaLR -231 240 85 1720 136 0 4 chr3 196363546 196363788 -31160790 - AluSg SINE Alu -69 241 1 2000 228 21 9 chr3 196363902 196364470 -31160108 + MER82 DNA MER2_type 1 624 -29 330 240 57 118 chr3 196364613 196364737 -31159841 - L1MEd LINE L1 -3644 2485 2355 2331 107 0 0 chr3 196364737 196365047 -31159531 - AluSq SINE Alu -3 310 1 1704 178 24 3 chr3 196365047 196365345 -31159233 - AluJb SINE Alu -8 304 1 330 240 57 118 chr3 196365345 196365448 -31159130 - L1MEd LINE L1 -3772 2357 2271 293 271 39 71 chr3 196366020 196366175 -31158403 - HAL1b LINE L1 -888 460 311 352 310 93 44 chr3 196366215 196366441 -31158137 - L1MEd LINE L1 -4886 1233 997 24 32 0 0 chr3 196366595 196366626 -31157952 + AT_rich Low_complexity Low_complexity 1 31 0 1539 114 0 0 chr3 196366678 196366889 -31157689 + AluSp SINE Alu 90 300 -13 326 0 0 0 chr3 196367227 196367268 -31157310 - L1PA2 LINE L1 -5 6150 6110 1683 270 81 43 chr3 196368828 196369996 -31154582 + L1ME1 LINE L1 37 1248 -5148 1829 261 74 19 chr3 196370001 196370922 -31153656 + L1ME1 LINE L1 1306 2276 -4120 659 79 0 0 chr3 196370922 196371011 -31153567 - pTR5 LTR ERV1 -2048 390 302 330 214 31 20 chr3 196371013 196371111 -31153467 - LTR30 LTR ERV1 -80 642 544 4418 163 58 34 chr3 196371111 196372195 -31152383 - pTR5 LTR ERV1 -413 2025 743 1767 196 55 88 chr3 196372253 196372580 -31151998 + LTR42 LTR ERVL 3 310 -185 2129 103 4 0 chr3 196372580 196372886 -31151692 + AluSp SINE Alu 1 307 0 1767 196 55 88 chr3 196372886 196373067 -31151511 + LTR42 LTR ERVL 310 495 0 192 68 45 23 chr3 196373094 196373138 -31151440 + (TA)n Simple_repeat Simple_repeat 2 46 0 2088 139 25 37 chr3 196373138 196373214 -31151364 + L1MB4 LINE L1 5783 5858 -322 2325 104 0 0 chr3 196373214 196373512 -31151066 - AluSx SINE Alu -13 299 2 2088 139 25 37 chr3 196373512 196373838 -31150740 + L1MB4 LINE L1 5858 6180 0 1654 255 74 47 chr3 196373842 196374523 -31150055 + L1ME1 LINE L1 2272 2933 -3282 2774 107 2 7 chr3 196374523 196374942 -31149636 + L1PB1 LINE L1 5731 6147 -4 1654 255 74 47 chr3 196374942 196375064 -31149514 + L1ME1 LINE L1 2933 3050 -3165 1856 167 0 23 chr3 196375064 196375364 -31149214 - AluJb SINE Alu -19 293 1 1654 255 74 47 chr3 196375364 196375496 -31149082 + L1ME1 LINE L1 3050 3233 -2982 3232 236 60 36 chr3 196375538 196376005 -31148573 + L1ME1 LINE L1 4071 4526 -1709 1943 154 10 22 chr3 196376005 196376317 -31148261 + AluSx SINE Alu 1 308 -4 3232 236 60 36 chr3 196376317 196376336 -31148242 + L1ME1 LINE L1 4526 4543 -1692 2274 107 0 0 chr3 196376336 196376625 -31147953 + AluSx SINE Alu 1 289 -23 3232 236 60 36 chr3 196376625 196377721 -31146857 + L1ME1 LINE L1 4543 5707 -528 2224 103 3 7 chr3 196377721 196378023 -31146555 + AluSq SINE Alu 1 301 -12 3232 236 60 36 chr3 196378023 196378532 -31146046 + L1ME1 LINE L1 5707 6203 -32 2005 93 22 0 chr3 196378533 196378802 -31145776 + AluSx SINE Alu 1 275 -37 249 33 0 0 chr3 196378806 196378836 -31145742 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 1259 117 0 0 chr3 196378836 196378999 -31145579 + AluSp SINE Alu 132 294 -19 2203 121 7 7 chr3 196379339 196379645 -31144933 + AluSq SINE Alu 1 306 -7 469 225 169 17 chr3 196380076 196380254 -31144324 + MIR SINE MIR 58 262 0 399 41 0 0 chr3 196380500 196380549 -31144029 + (TTA)n Simple_repeat Simple_repeat 3 51 0 1981 97 0 4 chr3 196381025 196381283 -31143295 + AluY SINE Alu 1 257 -54 2222 126 31 14 chr3 196381383 196381741 -31142837 + THE1B LTR MaLR 1 364 0 326 0 0 0 chr3 196383001 196383042 -31141536 + L1PA2 LINE L1 6110 6150 -5 1539 114 0 0 chr3 196383381 196383592 -31140986 - AluSp SINE Alu -13 300 90 24 32 0 0 chr3 196383644 196383675 -31140903 + AT_rich Low_complexity Low_complexity 1 31 0 352 310 93 44 chr3 196383829 196384055 -31140523 + L1MEd LINE L1 997 1233 -4886 22 0 0 0 chr3 196384604 196384626 -31139952 + AT_rich Low_complexity Low_complexity 1 22 0 23 0 0 0 chr3 196384883 196384906 -31139672 + AT_rich Low_complexity Low_complexity 1 23 0 16163 75 2 1 chr3 196385051 196387360 -31137218 + L1P LINE L1 2538 4848 -1298 3109 134 45 9 chr3 196389221 196389779 -31134799 - L1PBa LINE L1 -6285 578 1 476 322 52 29 chr3 196389924 196390371 -31134207 - HAL1 LINE L1 -840 1667 1211 302 258 16 31 chr3 196390899 196391027 -31133551 + LTR16A1 LTR ERVL 328 453 -4 23 33 0 0 chr3 196392333 196392363 -31132215 + AT_rich Low_complexity Low_complexity 1 30 0 448 286 103 11 chr3 196392406 196392581 -31131997 - L1MD2 LINE L1 -254 6105 5915 727 214 71 31 chr3 196393435 196393757 -31130821 + L1MEc LINE L1 1021 1355 -5041 383 314 43 21 chr3 196393775 196393915 -31130663 + MIR SINE MIR 3 145 -117 412 282 37 5 chr3 196393915 196394103 -31130475 + L1MC4a LINE L1 5676 5869 -1939 259 146 0 0 chr3 196394206 196394247 -31130331 + Tigger5 DNA MER2_type 14 54 -2269 394 185 33 11 chr3 196394252 196394344 -31130234 + Tigger5 DNA MER2_type 2230 2323 0 305 114 0 0 chr3 196394751 196394795 -31129783 - Alu SINE Alu -259 44 1 374 232 167 26 chr3 196394795 196395165 -31129413 - Charlie7 DNA MER1_type -2026 586 87 1273 122 0 11 chr3 196396121 196396310 -31128268 - AluY SINE Alu -21 290 104 469 315 117 0 chr3 196396622 196396784 -31127794 + L2 LINE L2 2894 3074 -239 347 218 191 18 chr3 196396864 196396974 -31127604 - MIR3 SINE MIR -6 202 74 1449 285 106 30 chr3 196396983 196397854 -31126724 + L2 LINE L2 2296 3232 -81 356 39 0 0 chr3 196397864 196397915 -31126663 - AluY SINE Alu 0 301 251 421 205 0 12 chr3 196397918 196398001 -31126577 + L2 LINE L2 3230 3311 -2 1992 113 3 17 chr3 196398977 196399278 -31125300 + AluSg SINE Alu 1 297 -13 2439 77 0 3 chr3 196399285 196399620 -31124958 + AluY SINE Alu 1 334 0 1037 181 36 52 chr3 196400029 196400277 -31124301 + MER21B LTR ERV1 571 814 -49 563 221 66 0 chr3 196400365 196400487 -31124091 + L2 LINE L2 3182 3311 -2 1063 140 12 0 chr3 196400907 196401092 -31123486 - AluSg/x SINE Alu 0 312 134 2338 101 0 0 chr3 196401092 196401389 -31123189 - AluSg SINE Alu -13 297 1 2330 112 0 0 chr3 196401947 196402250 -31122328 - AluSg SINE Alu -7 303 1 3727 204 100 20 chr3 196402389 196403178 -31121400 + MER21B LTR ERV1 1 852 -11 299 163 133 61 chr3 196403248 196403346 -31121232 + L2 LINE L2 3190 3294 -19 281 315 99 47 chr3 196404295 196404508 -31120070 + MLT1K LTR MaLR 24 247 -341 5370 125 15 22 chr3 196404553 196405122 -31119456 + L1PA16 LINE L1 5261 5823 -343 2241 125 0 6 chr3 196405122 196405435 -31119143 + AluSx SINE Alu 1 311 -1 5370 125 15 22 chr3 196405435 196405727 -31118851 + L1PA16 LINE L1 5823 6116 -50 598 258 8 0 chr3 196405764 196405892 -31118686 + MER50-int LTR ERV1 2788 2916 -4289 30 0 0 0 chr3 196405908 196405938 -31118640 + AT_rich Low_complexity Low_complexity 1 30 0 1030 200 29 16 chr3 196405943 196406188 -31118390 + L1MB8 LINE L1 5930 6177 -1 717 264 133 17 chr3 196406189 196406625 -31117953 + L1MEd LINE L1 862 1443 -1047 350 212 43 130 chr3 196407381 196407515 -31117063 + L1MEd LINE L1 2792 2900 -3229 1419 185 85 0 chr3 196407515 196407803 -31116775 - AluJo SINE Alu 0 310 1 350 212 43 130 chr3 196407803 196407898 -31116680 + L1MEd LINE L1 2900 3002 -3127 23 0 0 0 chr3 196408097 196408120 -31116458 + AT_rich Low_complexity Low_complexity 1 23 0 383 203 0 0 chr3 196408375 196408449 -31116129 - LTR33 LTR ERVL -53 468 395 291 293 81 24 chr3 196408482 196408605 -31115973 - LTR33 LTR ERVL -247 274 145 4326 188 24 14 chr3 196408611 196409402 -31115176 + ERVL LTR ERVL 1324 2122 -3642 707 271 92 5 chr3 196409402 196409609 -31114969 - LTR16B LTR ERVL -239 225 1 3567 217 80 72 chr3 196410606 196412101 -31112477 - MER31-int LTR ERV1 -774 4349 2603 827 190 0 0 chr3 196412105 196412242 -31112336 - FRAM SINE Alu -7 169 33 295 246 0 0 chr3 196412263 196412328 -31112250 + AluSp SINE Alu 120 184 -119 985 164 46 0 chr3 196412328 196412480 -31112098 - AluSx SINE Alu -153 159 1 552 232 7 7 chr3 196412481 196412619 -31111959 - MER31-int LTR ERV1 -2335 2601 2464 * 1093 179 49 95 chr3 196412610 196413019 -31111559 - MER31-int LTR ERV1 -2556 2567 2178 2173 118 0 6 chr3 196413094 196413407 -31111171 - AluSx SINE Alu -1 311 1 2470 45 0 19 chr3 196413552 196413862 -31110716 - AluY SINE Alu -7 304 1 26 30 0 0 chr3 196413889 196413922 -31110656 + AT_rich Low_complexity Low_complexity 1 33 0 1683 161 25 4 chr3 196414097 196414371 -31110207 + AluJb SINE Alu 15 294 -18 625 215 58 117 chr3 196414374 196415006 -31109572 - LTR57-int LTR ERVL -3800 1543 1237 1674 221 68 99 chr3 196414427 196414553 -31110025 - MER31-int LTR ERV1 -3297 1826 1698 2149 134 3 0 chr3 196414553 196414860 -31109718 - AluSq SINE Alu -5 308 1 1674 221 68 99 chr3 196414860 196415467 -31109111 - MER31-int LTR ERV1 -3425 1698 1116 380 127 63 0 chr3 196415484 196415547 -31109031 - MER34C LTR ERV1 -362 223 157 2163 122 3 0 chr3 196415552 196415855 -31108723 + AluSx SINE Alu 1 304 -8 451 293 38 0 chr3 196415855 196415988 -31108590 - MER31-int LTR ERV1 -4133 990 853 377 222 17 117 chr3 196416047 196416309 -31108269 - MER31-int LTR ERV1 -6681 856 552 4171 152 30 20 chr3 196416314 196416554 -31108024 + Tigger2 DNA MER2_type 1 237 -2481 2331 147 50 75 chr3 196416554 196416741 -31107837 + MSTB1 LTR MaLR 1 191 -241 2107 131 16 0 chr3 196416741 196417046 -31107532 - AluSx SINE Alu -2 310 1 2331 147 50 75 chr3 196417046 196417073 -31107505 + MSTB1 LTR MaLR 191 217 -215 1684 171 7 16 chr3 196417073 196417378 -31107200 + AluJb SINE Alu 1 302 -10 2331 147 50 75 chr3 196417378 196417605 -31106973 + MSTB1 LTR MaLR 217 432 0 4171 152 30 20 chr3 196417605 196418101 -31106477 + Tigger2 DNA MER2_type 237 744 -1974 1532 165 12 0 chr3 196418154 196418409 -31106169 + Tigger2 DNA MER2_type 2461 2718 0 250 132 0 0 chr3 196418423 196418461 -31106117 + L2 LINE L2 3263 3300 -13 736 117 8 8 chr3 196418501 196418629 -31105949 + (TTTC)n Simple_repeat Simple_repeat 1 128 0 2185 108 7 0 chr3 196418644 196418930 -31105648 - AluSc SINE Alu -21 288 1 1515 181 40 98 chr3 196419540 196419937 -31104641 + MLT1A2 LTR MaLR 1 374 0 2162 114 0 0 chr3 196420052 196420342 -31104236 - AluSx SINE Alu -2 310 21 2162 169 50 18 chr3 196420391 196420641 -31103937 - MSTD LTR MaLR 0 396 128 407 19 0 19 chr3 196420641 196420694 -31103884 + (TAGA)n Simple_repeat Simple_repeat 2 53 0 2162 169 50 18 chr3 196420694 196420827 -31103751 - MSTD LTR MaLR -268 128 1 2760 155 19 19 chr3 196420852 196421284 -31103294 - MSTB1 LTR MaLR 0 432 1 2458 75 0 3 chr3 196421378 196421684 -31102894 - AluSx SINE Alu -5 307 3 1112 311 124 44 chr3 196421735 196422167 -31102411 + L3 LINE CR1 620 1016 -561 2612 109 91 10 chr3 196422167 196422563 -31102015 - MSTA LTR MaLR 0 428 1 1112 311 124 44 chr3 196422563 196422996 -31101582 + L3 LINE CR1 1016 1554 -23 181 238 95 0 chr3 196422987 196423029 -31101549 - L3 LINE CR1 -90 1487 1442 * 2060 119 0 34 chr3 196423313 196423629 -31100949 - AluSq SINE Alu 0 308 3 300 91 0 0 chr3 196424472 196424516 -31100062 + (TTCA)n Simple_repeat Simple_repeat 1 44 0 267 214 82 20 chr3 196424561 196424659 -31099919 - MIR SINE MIR -74 188 85 225 333 12 12 chr3 196424710 196424791 -31099787 - L2 LINE L2 -6 3266 3186 1463 150 111 39 chr3 196425160 196425440 -31099138 + AluJo SINE Alu 1 300 -2 198 0 0 0 chr3 196425913 196425935 -31098643 + (A)n Simple_repeat Simple_repeat 1 22 0 269 361 28 0 chr3 196426281 196426389 -31098189 - L2 LINE L2 -8 3264 3154 855 147 0 22 chr3 196426396 196426532 -31098046 + FLAM_C SINE Alu 1 133 0 186 43 0 0 chr3 196426593 196426616 -31097962 + (CAA)n Simple_repeat Simple_repeat 2 24 0 190 148 0 33 chr3 196427102 196427163 -31097415 + (CGG)n Simple_repeat Simple_repeat 3 61 0 485 171 14 0 chr3 196428837 196428983 -31095595 + CT-rich Low_complexity Low_complexity 1 148 0 199 227 0 0 chr3 196429924 196429968 -31094610 - MIR SINE MIR -79 129 86 326 313 75 20 chr3 196430027 196430174 -31094404 - MIR SINE MIR -30 232 78 569 179 54 9 chr3 196430186 196430298 -31094280 + MER3 DNA MER1_type 9 125 -84 747 32 0 43 chr3 196430309 196430402 -31094176 - AluSg/x SINE Alu -13 297 209 2256 67 0 7 chr3 196430408 196430692 -31093886 - AluSx SINE Alu -28 284 3 395 164 0 0 chr3 196430694 196430767 -31093811 + MER3 DNA MER1_type 133 205 -4 278 160 20 0 chr3 196430733 196430783 -31093795 - MER3 DNA MER1_type -124 85 35 * 1040 152 9 71 chr3 196430824 196431048 -31093530 - AluJb SINE Alu -17 295 86 180 0 0 0 chr3 196431761 196431781 -31092797 + (T)n Simple_repeat Simple_repeat 1 20 0 305 283 50 50 chr3 196432415 196432574 -31092004 + MIR SINE MIR 72 230 -32 189 0 0 0 chr3 196433245 196433266 -31091312 + (TC)n Simple_repeat Simple_repeat 2 22 0 * 198 0 0 0 chr3 196433265 196433287 -31091291 + (TA)n Simple_repeat Simple_repeat 1 22 0 1375 176 54 30 chr3 196433806 196434102 -31090476 - AluJo SINE Alu -9 303 1 3612 153 35 26 chr3 196435963 196436618 -31087960 + L1MB4 LINE L1 5520 6180 0 2230 116 3 0 chr3 196437008 196437309 -31087269 - AluSp SINE Alu -11 302 1 2329 107 0 0 chr3 196437867 196438166 -31086412 - AluSx SINE Alu -13 299 1 317 23 0 23 chr3 196438183 196438226 -31086352 + (TG)n Simple_repeat Simple_repeat 2 43 0 1582 83 5 32 chr3 196438554 196438772 -31085806 - AluSp SINE Alu -1 312 101 1011 110 0 7 chr3 196439000 196439146 -31085432 + L1PB1 LINE L1 5957 6101 -50 1504 147 65 31 chr3 196439565 196439857 -31084721 - AluJo SINE Alu -10 302 1 185 274 97 16 chr3 196440149 196440211 -31084367 - MER5A DNA MER1_type -79 110 44 186 267 0 0 chr3 196440492 196440537 -31084041 - MIR SINE MIR 0 262 218 221 352 0 14 chr3 196440664 196440735 -31083843 + L2 LINE L2 3202 3271 -1 2393 85 0 16 chr3 196440972 196441279 -31083299 + AluSx SINE Alu 1 302 -10 2536 50 0 3 chr3 196443262 196443563 -31081015 - AluY SINE Alu -11 300 1 21 36 0 0 chr3 196443694 196443722 -31080856 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 196445166 196445187 -31079391 + AT_rich Low_complexity Low_complexity 1 21 0 337 274 162 8 chr3 196448120 196448237 -31076341 + L2 LINE L2 3136 3270 -2 251 178 22 0 chr3 196448452 196448497 -31076081 - MLT1K LTR MaLR -23 565 520 2511 60 0 0 chr3 196448716 196449014 -31075564 - AluY SINE Alu -13 298 1 1801 114 100 4 chr3 196449795 196450066 -31074512 - AluSg SINE Alu -13 297 1 309 51 0 0 chr3 196450223 196450262 -31074316 + (TCCA)n Simple_repeat Simple_repeat 2 40 0 180 229 148 0 chr3 196451209 196451270 -31073308 + MIR3 SINE MIR 136 205 -3 1623 155 34 116 chr3 196451309 196451479 -31073099 + MLT1A2 LTR MaLR 1 183 -191 789 181 114 20 chr3 196451479 196451628 -31072950 + FAM SINE Alu 1 163 -12 1623 155 34 116 chr3 196451628 196451864 -31072714 + MLT1A2 LTR MaLR 183 374 0 21 0 0 0 chr3 196451880 196451901 -31072677 + AT_rich Low_complexity Low_complexity 1 21 0 226 140 60 40 chr3 196452309 196452359 -31072219 + L2 LINE L2 3262 3312 -1 2369 85 0 0 chr3 196452533 196452826 -31071752 + AluSg SINE Alu 1 293 -17 301 275 75 0 chr3 196453802 196453922 -31070656 - MIR SINE MIR -57 205 77 188 219 0 24 chr3 196454343 196454384 -31070194 - L2 LINE L2 -1512 1802 1763 2165 116 0 3 chr3 196455905 196456206 -31068372 - AluSx SINE Alu -12 300 1 883 229 39 35 chr3 196456256 196456487 -31068091 - MIR SINE MIR 0 262 31 371 151 0 14 chr3 196456953 196457026 -31067552 - L1PA10 LINE L1 -3 6165 6094 240 287 36 92 chr3 196457363 196457558 -31067020 - MIR SINE MIR -57 205 22 513 233 58 24 chr3 196458168 196458374 -31066204 - L1MC5 LINE L1 -44 7917 7705 23 86 0 0 chr3 196459015 196459073 -31065505 + AT_rich Low_complexity Low_complexity 1 58 0 517 303 56 10 chr3 196459296 196459491 -31065087 - MIR SINE MIR -51 211 8 850 187 45 15 chr3 196459578 196459776 -31064802 + MER3 DNA MER1_type 1 204 -5 241 357 36 0 chr3 196462692 196462804 -31061774 - L3 LINE CR1 -6 1571 1456 219 360 152 8 chr3 196462801 196462926 -31061652 + MIR3 SINE MIR 43 185 -23 * 738 243 93 4 chr3 196463145 196463206 -31061372 + MER112 DNA MER1_type 8 62 -198 390 21 0 0 chr3 196463206 196463253 -31061325 + (CA)n Simple_repeat Simple_repeat 2 48 0 738 243 93 4 chr3 196463253 196463417 -31061161 + MER112 DNA MER1_type 62 253 -7 502 353 71 4 chr3 196463418 196463673 -31060905 - L3 LINE CR1 -264 1313 1042 402 271 42 8 chr3 196463731 196463849 -31060729 - L2 LINE L2 -5 3308 3187 32 0 0 0 chr3 196464081 196464113 -31060465 + AT_rich Low_complexity Low_complexity 1 32 0 201 286 61 71 chr3 196464396 196464494 -31060084 - L2 LINE L2 -38 3275 3179 2013 131 10 3 chr3 196465456 196465761 -31058817 - AluSx SINE Alu -5 307 1 1765 177 0 29 chr3 196467748 196468059 -31056519 - AluJo SINE Alu -10 302 1 21 36 0 0 chr3 196468943 196468971 -31055607 + AT_rich Low_complexity Low_complexity 1 28 0 214 284 98 49 chr3 196470113 196470215 -31054363 - MIR3 SINE MIR -4 204 98 1232 240 80 62 chr3 196470596 196471046 -31053532 - LTR40c LTR ERVL -1 464 7 1770 164 3 7 chr3 196471648 196471941 -31052637 + AluJb SINE Alu 1 292 -20 231 36 0 0 chr3 196471954 196471982 -31052596 + (CA)n Simple_repeat Simple_repeat 2 29 0 208 270 111 0 chr3 196472129 196472192 -31052386 - MIR SINE MIR -114 148 79 440 300 0 97 chr3 196472284 196472521 -31052057 + L2 LINE L2 3100 3313 0 615 222 58 103 chr3 196472686 196472947 -31051631 + Charlie8 DNA MER1_type 37 285 -2132 1858 177 3 0 chr3 196473560 196473854 -31050724 + AluJo SINE Alu 1 295 -17 266 317 174 19 chr3 196475740 196475901 -31048677 - MIR3 SINE MIR -10 198 13 21 0 0 0 chr3 196476638 196476659 -31047919 + AT_rich Low_complexity Low_complexity 1 21 0 197 263 40 66 chr3 196477284 196477360 -31047218 + L2 LINE L2 3199 3272 0 340 215 177 32 chr3 196477732 196477890 -31046688 - MER117 DNA MER1_type -3 194 14 276 30 0 0 chr3 196477903 196477936 -31046642 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1897 120 64 56 chr3 196478177 196478534 -31046044 + MER46B DNA MER2_type 1 235 -1 258 254 0 0 chr3 196479037 196479092 -31045486 + (TG)n Simple_repeat Simple_repeat 1 55 0 396 0 0 0 chr3 196479356 196479400 -31045178 + (TG)n Simple_repeat Simple_repeat 2 45 0 210 372 0 0 chr3 196480003 196480097 -31044481 - MIR3 SINE MIR -3 205 112 1872 142 3 42 chr3 196480299 196480608 -31043970 - AluJo SINE Alu -15 297 1 1080 188 87 47 chr3 196480614 196480751 -31043827 - AluJo SINE Alu -12 290 160 2600 40 0 0 chr3 196480751 196481048 -31043530 - AluY SINE Alu -14 297 1 1080 188 87 47 chr3 196481048 196481187 -31043391 - AluJo SINE Alu -142 160 3 227 292 31 15 chr3 196481318 196481383 -31043195 - MER5B DNA MER1_type -58 120 55 551 188 8 16 chr3 196481383 196481511 -31043067 - L1MB8 LINE L1 0 6178 6052 1415 170 68 72 chr3 196481721 196482121 -31042457 - L1MB7 LINE L1 -97 6087 5690 181 284 14 27 chr3 196482123 196482197 -31042381 - MER5A DNA MER1_type -115 74 2 343 281 143 39 chr3 196483229 196483279 -31041299 - L1ME4a LINE L1 -113 6008 5965 246 32 0 0 chr3 196483279 196483310 -31041268 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 343 281 143 39 chr3 196483310 196483462 -31041116 - L1ME4a LINE L1 -156 5965 5785 485 189 68 15 chr3 196484172 196484304 -31040274 + L1ME4a LINE L1 5962 6100 -21 317 232 58 22 chr3 196485027 196485165 -31039413 - L1ME4a LINE L1 -11 6110 5968 195 296 61 41 chr3 196485568 196485666 -31038912 - MIR SINE MIR -64 198 99 456 260 49 8 chr3 196487389 196487512 -31037066 + Charlie1 DNA MER1_type 1 128 -2633 265 271 29 0 chr3 196487688 196487758 -31036820 + L2 LINE L2 3242 3313 0 210 303 15 15 chr3 196488900 196488966 -31035612 + L2 LINE L2 3234 3299 -14 267 294 118 7 chr3 196489667 196489803 -31034775 + MIR SINE MIR 74 224 -38 189 245 0 20 chr3 196490053 196490102 -31034476 - MIR SINE MIR -114 148 101 180 311 212 45 chr3 196491747 196491879 -31032699 - MIR3 SINE MIR -23 185 32 589 192 0 0 chr3 196493142 196493241 -31031337 - FLAM_C SINE Alu -26 117 19 799 135 0 24 chr3 196493679 196493805 -31030773 - FLAM_A SINE Alu -9 124 2 2111 88 0 0 chr3 196495432 196495695 -31028883 + AluSg SINE Alu 39 301 -9 2623 20 3 3 chr3 196496669 196496972 -31027606 - AluYa5 SINE Alu -8 303 1 2022 103 7 18 chr3 196498351 196498624 -31025954 + AluSx SINE Alu 33 302 -10 219 195 0 0 chr3 196501051 196501092 -31023486 + L2 LINE L2 3232 3272 0 280 339 89 41 chr3 196501348 196501740 -31022838 + L2 LINE L2 2468 2878 -436 876 159 0 0 chr3 196502110 196502242 -31022336 + FLAM_A SINE Alu 1 132 -1 2382 176 48 64 chr3 196503752 196504074 -31020504 - L1MB8 LINE L1 0 6178 5869 2339 95 0 0 chr3 196504074 196504368 -31020210 - AluSx SINE Alu -16 296 3 2382 176 48 64 chr3 196504368 196504635 -31019943 - L1MB8 LINE L1 -309 5869 5599 23 33 0 0 chr3 196504990 196505020 -31019558 + AT_rich Low_complexity Low_complexity 1 30 0 2442 79 0 7 chr3 196506398 196506702 -31017876 + AluY SINE Alu 6 307 -4 352 304 56 8 chr3 196506749 196506874 -31017704 - L2 LINE L2 0 3313 3183 266 213 234 0 chr3 196507902 196507996 -31016582 + L2 LINE L2 3156 3271 -1 180 0 0 0 chr3 196508091 196508111 -31016467 + (TTTTTG)n Simple_repeat Simple_repeat 2 21 0 357 236 48 117 chr3 196508142 196508216 -31016362 + MER102a DNA MER1_type 84 162 -1255 2046 75 42 4 chr3 196508216 196508481 -31016097 + AluSp SINE Alu 19 293 -20 357 236 48 117 chr3 196508481 196508656 -31015922 + MER102a DNA MER1_type 162 321 -9 848 134 8 0 chr3 196509254 196509373 -31015205 - FLAM_C SINE Alu -13 120 1 1458 178 31 14 chr3 196510559 196510846 -31013732 - AluJo SINE Alu -20 292 1 278 211 0 0 chr3 196510899 196510951 -31013627 - AluJ/monomer SINE Alu -8 294 243 21 0 0 0 chr3 196511306 196511327 -31013251 + AT_rich Low_complexity Low_complexity 1 21 0 2014 142 0 0 chr3 196511600 196511895 -31012683 - AluSx SINE Alu -15 297 3 289 315 176 0 chr3 196512343 196512508 -31012070 - MIR SINE MIR -20 242 49 384 280 153 7 chr3 196514891 196515041 -31009537 + MIR SINE MIR 22 193 -69 1709 132 98 11 chr3 196515178 196515465 -31009113 - AluSx SINE Alu 0 312 1 307 291 73 36 chr3 196516037 196516147 -31008431 + L1MD2 LINE L1 5959 6072 -287 1624 180 0 17 chr3 196516485 196516780 -31007798 - AluJb SINE Alu -22 290 1 183 156 0 0 chr3 196517494 196517526 -31007052 + GA-rich Low_complexity Low_complexity 2 33 0 2419 64 14 0 chr3 196518622 196518919 -31005659 + AluSp SINE Alu 1 301 -12 231 208 0 111 chr3 196519406 196519478 -31005100 - L2 LINE L2 -1 3312 3249 217 304 50 77 chr3 196519602 196519822 -31004756 - L2 LINE L2 -183 3089 2876 2001 129 29 0 chr3 196519926 196520205 -31004373 - AluSx SINE Alu -25 287 1 22 0 0 0 chr3 196520441 196520463 -31004115 + AT_rich Low_complexity Low_complexity 1 22 0 420 149 54 0 chr3 196521265 196521339 -31003239 - MLT1F LTR MaLR -2 540 463 407 233 79 31 chr3 196521341 196521558 -31003020 - MLT1F LTR MaLR -264 303 1 433 262 121 21 chr3 196521560 196521701 -31002877 - MLT1F-int LTR MaLR -2 1369 1215 257 169 17 0 chr3 196522754 196522813 -31001765 + (TG)n Simple_repeat Simple_repeat 2 61 0 202 304 148 26 chr3 196523537 196523652 -31000926 - MIR SINE MIR -124 138 10 2011 110 55 3 chr3 196524219 196524510 -31000068 - AluY SINE Alu -4 307 2 1674 150 52 14 chr3 196524882 196525169 -30999409 + AluJo SINE Alu 1 298 -14 854 189 14 34 chr3 196527316 196527464 -30997114 - FRAM SINE Alu -19 147 3 370 143 91 0 chr3 196528508 196528585 -30995993 + MIR SINE MIR 101 184 -78 2069 104 0 48 chr3 196529060 196529369 -30995209 + AluSx SINE Alu 1 294 -18 677 293 62 9 chr3 196529463 196529688 -30994890 + MIR SINE MIR 26 262 0 190 267 174 12 chr3 196530148 196530234 -30994344 + L2 LINE L2 3149 3248 -24 1795 177 8 46 chr3 196530261 196530633 -30993945 - MLT1A1 LTR MaLR 0 365 8 21 0 0 0 chr3 196531017 196531038 -30993540 + AT_rich Low_complexity Low_complexity 1 21 0 2244 86 4 0 chr3 196531137 196531461 -30993117 + AluSc SINE Alu 1 325 0 2503 176 29 2 chr3 196531478 196531892 -30992686 - MSTB LTR MaLR -1 425 1 308 209 15 15 chr3 196533149 196533216 -30991362 + Tigger5 DNA MER2_type 2257 2323 0 2154 118 3 3 chr3 196533316 196533622 -30990956 - AluSq SINE Alu -7 306 1 2174 95 3 16 chr3 196533622 196533926 -30990652 - AluSg SINE Alu -10 300 1 415 205 0 12 chr3 196534902 196534985 -30989593 - L2 LINE L2 -2 3311 3230 420 51 0 0 chr3 196534988 196535047 -30989531 + Alu SINE Alu 250 308 -2 916 307 100 37 chr3 196535049 196535872 -30988706 - L2 LINE L2 -81 3232 2348 1717 156 18 7 chr3 196535984 196536267 -30988311 - AluSx SINE Alu -26 286 1 237 237 26 13 chr3 196536719 196536795 -30987783 + MER5B DNA MER1_type 1 77 -101 220 216 59 0 chr3 196536892 196536943 -30987635 + MER5B DNA MER1_type 125 178 0 28 29 0 0 chr3 196537138 196537173 -30987405 + AT_rich Low_complexity Low_complexity 1 35 0 2372 93 3 0 chr3 196537181 196537491 -30987087 + AluSp SINE Alu 2 312 -1 308 209 15 15 chr3 196537585 196537652 -30986926 - Tigger5 DNA MER2_type 0 2323 2257 854 189 14 34 chr3 196540000 196540148 -30984430 + FRAM SINE Alu 3 147 -19 1198 218 68 56 chr3 196641366 196641674 -30882904 - L1MC4 LINE L1 -386 7656 7353 1812 188 0 0 chr3 196641674 196641983 -30882595 - AluJb SINE Alu -3 309 1 1198 218 68 56 chr3 196641983 196642016 -30882562 - L1MC4 LINE L1 -689 7353 7322 2421 57 7 0 chr3 196642016 196642313 -30882265 + AluSp SINE Alu 1 299 -14 1198 218 68 56 chr3 196642313 196642397 -30882181 - L1MC4 LINE L1 -720 7322 7225 1128 132 0 0 chr3 196642400 196642574 -30882004 - AluSg/x SINE Alu -2 308 135 1146 157 66 46 chr3 196642577 196642792 -30881786 - L1MC4 LINE L1 -805 7237 7012 2039 96 3 41 chr3 196642792 196642962 -30881616 - AluSx SINE Alu 0 302 147 1669 60 5 14 chr3 196642962 196643180 -30881398 - AluY SINE Alu -13 298 83 2039 96 3 41 chr3 196643180 196643322 -30881256 - AluSx SINE Alu -155 147 1 1146 157 66 46 chr3 196643322 196643410 -30881168 - L1MC4 LINE L1 -1030 7012 6927 616 315 124 27 chr3 196643410 196643862 -30880716 + L2 LINE L2 2688 3272 0 1554 137 63 4 chr3 196644474 196644744 -30879834 - AluJo SINE Alu -26 286 1 2130 124 0 0 chr3 196644752 196645042 -30879536 - AluSx SINE Alu -22 290 1 807 146 8 0 chr3 196645259 196645382 -30879196 - AluJo SINE Alu -178 134 11 2034 113 0 30 chr3 196645948 196646249 -30878329 + AluSx SINE Alu 1 292 -20 361 290 71 0 chr3 196646251 196646364 -30878214 + L1MC4 LINE L1 6614 6706 -1336 851 251 88 0 chr3 196646369 196646596 -30877982 - MIR SINE MIR -14 248 2 277 318 91 27 chr3 196646812 196646922 -30877656 - L2 LINE L2 0 3313 3197 230 319 36 42 chr3 196647368 196647534 -30877044 + G-rich Low_complexity Low_complexity 3 167 0 413 271 75 63 chr3 196647585 196647840 -30876738 - L2 LINE L2 -185 3087 2830 386 314 72 34 chr3 196647859 196648219 -30876359 - L2 LINE L2 -195 3077 2703 1073 141 6 0 chr3 196648238 196648401 -30876177 - AluSg/x SINE Alu -15 297 134 2346 96 0 6 chr3 196648401 196648715 -30875863 - AluSq SINE Alu 0 313 2 918 150 6 31 chr3 196649066 196649226 -30875352 - FRAM SINE Alu -20 156 1 477 265 9 93 chr3 196649258 196649310 -30875268 - MIR SINE MIR -1 261 206 2270 97 3 0 chr3 196649310 196649609 -30874969 - AluSp SINE Alu -7 306 7 477 265 9 93 chr3 196649609 196649771 -30874807 - MIR SINE MIR -56 206 65 2045 135 0 29 chr3 196649823 196650135 -30874443 + AluSx SINE Alu 1 303 -9 219 327 39 64 chr3 196650156 196650216 -30874362 - MIR SINE MIR 0 262 202 2117 84 0 72 chr3 196650216 196650354 -30874224 + AluSc SINE Alu 1 147 -162 2315 61 27 0 chr3 196650354 196650650 -30873928 + AluY SINE Alu 1 304 -7 2117 84 0 72 chr3 196650650 196650831 -30873747 + AluSc SINE Alu 147 297 -12 219 327 39 64 chr3 196650831 196650871 -30873707 - MIR SINE MIR -60 202 163 1326 195 60 14 chr3 196650871 196651153 -30873425 - AluJo SINE Alu -17 295 1 219 327 39 64 chr3 196651153 196651207 -30873371 - MIR SINE MIR -99 163 111 742 167 0 0 chr3 196651992 196652106 -30872472 + FLAM_C SINE Alu 1 114 -19 924 204 17 0 chr3 196652111 196652287 -30872291 - AluSp SINE Alu -1 312 134 2191 95 3 16 chr3 196652287 196652592 -30871986 - AluSx SINE Alu -11 301 1 1644 171 3 34 chr3 196652600 196652898 -30871680 - AluJb SINE Alu -20 292 4 1532 127 161 8 chr3 196652920 196653180 -30871398 - AluSg SINE Alu 0 300 1 785 148 8 23 chr3 196653188 196653316 -30871262 - FLAM_C SINE Alu -3 130 5 21 36 0 0 chr3 196653325 196653353 -30871225 + AT_rich Low_complexity Low_complexity 1 28 0 2139 90 10 0 chr3 196653926 196654216 -30870362 - AluSx SINE Alu -19 293 1 443 275 193 0 chr3 196654216 196654387 -30870191 + L2 LINE L2 3110 3313 0 404 211 300 11 chr3 196654390 196654545 -30870033 - MIR SINE MIR 0 262 153 2444 73 0 0 chr3 196654545 196654848 -30869730 + AluSx SINE Alu 1 303 -9 404 211 300 11 chr3 196654848 196654882 -30869696 - MIR SINE MIR -109 153 18 2042 105 42 0 chr3 196654916 196655201 -30869377 - AluSx SINE Alu -15 297 1 457 240 59 83 chr3 196655203 196655252 -30869326 - MIR SINE MIR -6 256 207 1709 176 19 3 chr3 196655252 196655559 -30869019 - AluSx SINE Alu 0 312 1 457 240 59 83 chr3 196655559 196655713 -30868865 - MIR SINE MIR -55 207 58 2209 101 0 13 chr3 196655906 196656214 -30868364 - AluSx SINE Alu -8 304 1 1035 57 0 36 chr3 196656214 196656354 -30868224 - AluSq/x SINE Alu -177 135 1 300 228 25 0 chr3 196656590 196656669 -30867909 - L1MC5 LINE L1 -909 7052 6972 2299 72 0 16 chr3 196656673 196656977 -30867601 - AluY SINE Alu -12 299 1 1618 133 3 73 chr3 196657078 196657395 -30867183 - AluJo SINE Alu -17 295 1 2002 112 6 63 chr3 196657412 196657772 -30866806 - AluSx SINE Alu 0 341 1 219 156 31 78 chr3 196657807 196657871 -30866707 - MER5A DNA MER1_type -28 161 101 * 259 330 0 21 chr3 196657814 196657908 -30866670 + MER5A DNA MER1_type 45 136 -53 2081 98 7 30 chr3 196658024 196658329 -30866249 - AluSq SINE Alu -13 300 3 295 253 117 49 chr3 196659001 196659163 -30865415 - L2 LINE L2 -167 3105 2933 274 216 29 79 chr3 196659301 196659440 -30865138 + (CCCCAG)n Simple_repeat Simple_repeat 1 132 0 493 206 103 91 chr3 196660010 196660076 -30864502 - MIR SINE MIR -10 252 188 1971 106 3 36 chr3 196660076 196660377 -30864201 - AluSq SINE Alu -20 293 3 493 206 103 91 chr3 196660377 196660485 -30864093 - MIR SINE MIR -74 188 76 2074 114 13 7 chr3 196661247 196661555 -30863023 - AluSg SINE Alu 0 310 1 1992 130 10 0 chr3 196661557 196661849 -30862729 - AluSx SINE Alu -17 295 1 1082 253 12 0 chr3 196661859 196662104 -30862474 - MIR SINE MIR -13 249 2 944 178 12 0 chr3 196662164 196662327 -30862251 - AluJo SINE Alu -16 296 132 397 77 0 0 chr3 196662342 196662394 -30862184 + MER66A LTR ERV1 287 338 -140 22 35 0 0 chr3 196662394 196662423 -30862155 + AT_rich Low_complexity Low_complexity 1 29 0 2329 68 10 0 chr3 196662424 196662716 -30861862 + AluY SINE Alu 1 295 -16 705 181 0 8 chr3 196662716 196662843 -30861735 - AluJo SINE Alu -176 126 1 207 250 0 0 chr3 196662851 196662895 -30861683 + CT-rich Low_complexity Low_complexity 3 46 0 1983 105 0 52 chr3 196662972 196663277 -30861301 - AluSx SINE Alu -23 289 1 540 277 86 71 chr3 196664012 196664351 -30860227 - L2 LINE L2 -1 3271 2928 861 152 202 0 chr3 196664389 196664567 -30860011 - AluJb SINE Alu -14 298 85 229 288 17 42 chr3 196664587 196664705 -30859873 - L2 LINE L2 -20 3252 3138 308 203 16 0 chr3 196664960 196665024 -30859554 - MIR SINE MIR -109 153 89 2533 61 0 0 chr3 196665253 196665564 -30859014 - AluSx SINE Alu -1 311 1 237 261 17 25 chr3 196666339 196666458 -30858120 + (CCG)n Simple_repeat Simple_repeat 3 120 0 180 125 0 0 chr3 196666511 196666543 -30858035 + (CCG)n Simple_repeat Simple_repeat 1 32 0 220 253 13 13 chr3 196666544 196666619 -30857959 + C-rich Low_complexity Low_complexity 5 79 0 1618 164 17 17 chr3 196666894 196666916 -30857662 - AluSx SINE Alu -20 292 271 2085 105 13 3 chr3 196666916 196667220 -30857358 + AluSx SINE Alu 1 307 -5 1618 164 17 17 chr3 196667220 196667489 -30857089 - AluSx SINE Alu -40 272 1 827 147 0 42 chr3 196667490 196667633 -30856945 - AluJo SINE Alu -174 138 2 575 231 90 19 chr3 196667709 196667921 -30856657 - MIR SINE MIR -19 243 17 1038 209 47 40 chr3 196667936 196668166 -30856412 + MIR SINE MIR 8 242 -20 1995 126 3 0 chr3 196668166 196668460 -30856118 + AluSq SINE Alu 1 295 -18 1038 209 47 40 chr3 196668460 196668482 -30856096 + MIR SINE MIR 242 262 0 1295 126 35 112 chr3 196670664 196670949 -30853629 - AluJo SINE Alu -4 308 46 2316 86 3 3 chr3 196670971 196671284 -30853294 - AluSq SINE Alu 0 313 1 1696 175 3 10 chr3 196671336 196671639 -30852939 - AluJb SINE Alu -1 311 11 500 250 161 49 chr3 196671736 196671960 -30852618 + MER112 DNA MER1_type 12 260 0 2287 101 3 0 chr3 196672197 196672505 -30852073 + AluSq SINE Alu 1 309 -4 2027 96 7 7 chr3 196672610 196672920 -30851658 - AluSx SINE Alu 0 312 3 2131 101 0 20 chr3 196672924 196673222 -30851356 - AluSx SINE Alu -8 304 13 860 141 45 0 chr3 196673232 196673388 -30851190 - L1MA3 LINE L1 0 6305 6143 1621 187 13 25 chr3 196673388 196673704 -30850874 - AluJo SINE Alu 0 312 1 261 109 0 0 chr3 196673706 196673752 -30850826 + (TTTTA)n Simple_repeat Simple_repeat 2 47 0 895 172 14 0 chr3 196673752 196673897 -30850681 - AluJo/FRAM SINE Alu -19 283 137 1425 137 0 21 chr3 196673900 196674134 -30850444 - AluSp SINE Alu -4 309 81 590 314 134 9 chr3 196674144 196674494 -30850084 + L2 LINE L2 2919 3312 -1 1166 123 0 0 chr3 196674513 196674683 -30849895 + AluSg/x SINE Alu 137 306 -6 815 260 51 40 chr3 196674685 196674958 -30849620 + L1MC5 LINE L1 7161 7436 -525 825 133 0 8 chr3 196675041 196675169 -30849409 + FLAM_C SINE Alu 1 127 -16 297 220 163 43 chr3 196675175 196675226 -30849352 + Charlie5 DNA MER1_type 2462 2505 -119 1683 187 10 0 chr3 196675226 196675525 -30849053 - AluJb SINE Alu -5 307 6 297 220 163 43 chr3 196675525 196675577 -30849001 + Charlie5 DNA MER1_type 2505 2549 -75 2045 122 0 10 chr3 196675577 196675873 -30848705 + AluSx SINE Alu 11 303 -9 297 220 163 43 chr3 196675873 196675909 -30848669 + Charlie5 DNA MER1_type 2549 2619 -5 489 229 14 63 chr3 196675929 196676152 -30848426 + L1MC5 LINE L1 7454 7665 -296 219 139 0 0 chr3 196676225 196676261 -30848317 + (CA)n Simple_repeat Simple_repeat 1 36 0 1648 162 34 20 chr3 196676265 196676562 -30848016 - AluJb SINE Alu -11 301 1 1532 168 28 14 chr3 196676562 196676847 -30847731 + L1MB7 LINE L1 5896 6184 0 808 147 0 0 chr3 196676959 196677075 -30847503 + FLAM_C SINE Alu 2 117 -16 180 0 0 0 chr3 196677094 196677114 -30847464 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1859 102 8 4 chr3 196677262 196677527 -30847051 - AluSx SINE Alu -12 300 35 483 279 62 0 chr3 196677578 196677707 -30846871 - MER91B DNA MER1_type -53 137 1 530 255 191 48 chr3 196677707 196678068 -30846510 + L1MC4a LINE L1 5699 6007 -1801 1672 157 0 37 chr3 196678068 196678368 -30846210 - AluJo SINE Alu -23 289 1 2104 126 0 7 chr3 196678371 196678680 -30845898 - AluSx SINE Alu -5 307 1 530 255 191 48 chr3 196678680 196678734 -30845844 + L1MC4a LINE L1 6008 6178 -1630 690 224 14 85 chr3 196679047 196679180 -30845398 + MIR SINE MIR 30 171 -91 2184 82 7 10 chr3 196679180 196679472 -30845106 + AluSc SINE Alu 1 291 -18 1677 179 3 16 chr3 196679480 196679788 -30844790 + AluJb SINE Alu 2 305 -7 690 224 14 85 chr3 196679788 196679868 -30844710 + MIR SINE MIR 178 236 -26 197 344 108 44 chr3 196679914 196680274 -30844304 - L2 LINE L2 -1232 2082 1700 714 117 0 0 chr3 196680349 196680443 -30844135 + AluS SINE Alu 2 95 -218 1873 75 8 4 chr3 196680443 196680696 -30843882 + AluSp SINE Alu 60 313 0 1162 240 57 23 chr3 196680696 196681046 -30843532 + L1MC4a LINE L1 6955 7316 -492 861 216 0 0 chr3 196681052 196681228 -30843350 + FRAM SINE Alu 1 172 -4 1921 224 136 2 chr3 196681228 196681675 -30842903 + L1MC4 LINE L1 7386 7930 -112 2372 93 0 0 chr3 196681675 196681804 -30842774 + AluSq SINE Alu 1 129 -184 459 0 0 0 chr3 196681804 196681855 -30842723 + (CA)n Simple_repeat Simple_repeat 2 52 0 2372 93 0 0 chr3 196681855 196682037 -30842541 + AluSq SINE Alu 128 312 -1 1921 224 136 2 chr3 196682037 196682168 -30842410 + L1MC4 LINE L1 7930 8042 0 338 304 47 27 chr3 196682205 196682288 -30842290 - MIR SINE MIR 0 262 173 913 135 0 0 chr3 196682288 196682421 -30842157 - FLAM_C SINE Alu 0 133 1 338 304 47 27 chr3 196682421 196682485 -30842093 - MIR SINE MIR -89 173 112 403 338 33 7 chr3 196682591 196682742 -30841836 + L2 LINE L2 3116 3270 -2 388 238 49 70 chr3 196682812 196682849 -30841729 - MIR SINE MIR -62 200 164 1773 167 3 13 chr3 196682849 196683154 -30841424 + AluJo SINE Alu 1 302 -10 388 238 49 70 chr3 196683154 196683259 -30841319 - MIR SINE MIR -98 164 61 2208 100 10 0 chr3 196683718 196684017 -30840561 + AluSx SINE Alu 1 302 -10 275 293 79 14 chr3 196684058 196684198 -30840380 - MIR SINE MIR -83 179 31 244 300 38 0 chr3 196684283 196684363 -30840215 - Charlie8 DNA MER1_type -2151 266 184 2162 73 3 44 chr3 196684380 196684695 -30839883 + AluY SINE Alu 1 302 -9 2086 112 3 13 chr3 196684755 196685060 -30839518 - AluJb SINE Alu -10 302 1 220 111 44 22 chr3 196685571 196685616 -30838962 + (CAGAGA)n Simple_repeat Simple_repeat 4 49 0 340 177 0 167 chr3 196685847 196685906 -30838672 + MER116 DNA Mariner 1 40 -40 2043 118 7 0 chr3 196685906 196686195 -30838383 - AluSp SINE Alu -17 296 6 340 177 0 167 chr3 196686195 196686231 -30838347 + MER116 DNA Mariner 40 80 0 1024 277 187 35 chr3 196686402 196686893 -30837685 + MLT1K LTR MaLR 2 567 -21 641 147 40 196 chr3 196687063 196687287 -30837291 - MER91B DNA MER1_type -1 189 1 2080 94 0 0 chr3 196688599 196688900 -30835678 + AluSq SINE Alu 11 311 0 2274 92 3 10 chr3 196688910 196689224 -30835354 + AluSq SINE Alu 1 312 -1 280 149 0 0 chr3 196689405 196689452 -30835126 - L2 LINE L2 0 3313 3267 420 245 20 0 chr3 196689549 196689647 -30834931 - L2 LINE L2 -11 3302 3203 1575 157 60 0 chr3 196689649 196689917 -30834661 - AluJo SINE Alu -15 297 14 185 222 0 0 chr3 196689925 196689961 -30834617 - L2 LINE L2 -92 3221 3186 2175 99 0 7 chr3 196690005 196690297 -30834281 - AluSg SINE Alu -20 290 1 773 244 18 0 chr3 196690469 196690637 -30833941 + MER5B DNA MER1_type 8 178 0 245 294 31 0 chr3 196691239 196691402 -30833176 + (TTATA)n Simple_repeat Simple_repeat 5 172 0 942 112 0 15 chr3 196691404 196691538 -30833040 - FLAM_C SINE Alu -1 132 1 1884 157 10 3 chr3 196692193 196692499 -30832079 + AluJo SINE Alu 1 308 -4 2096 106 0 7 chr3 196693322 196693615 -30830963 - AluSx SINE Alu -21 291 1 350 346 39 6 chr3 196694658 196694814 -30829764 - MIR3 SINE MIR -17 191 31 255 246 51 8 chr3 196695015 196695133 -30829445 + (CAGAGA)n Simple_repeat Simple_repeat 3 125 0 * 322 324 0 32 chr3 196695070 196695255 -30829323 + GA-rich Low_complexity Low_complexity 2 180 0 838 210 81 44 chr3 196697240 196697420 -30827158 + Charlie4a DNA MER1_type 8 201 -1760 2212 92 0 13 chr3 196697420 196697725 -30826853 + AluY SINE Alu 1 301 -10 838 210 81 44 chr3 196697725 196697792 -30826786 + Charlie4a DNA MER1_type 201 264 -1697 876 207 96 11 chr3 196697858 196697929 -30826649 + Charlie4a DNA MER1_type 220 284 -1677 2223 86 31 0 chr3 196697929 196698221 -30826357 - AluSq SINE Alu -12 301 1 876 207 96 11 chr3 196698221 196698410 -30826168 + Charlie4a DNA MER1_type 284 502 -6 481 263 58 41 chr3 196698477 196698648 -30825930 + L2 LINE L2 2914 3087 -185 2228 106 0 3 chr3 196699308 196699610 -30824968 + AluSx SINE Alu 1 301 -11 534 314 52 42 chr3 196699620 196699800 -30824778 + MLT1K LTR MaLR 69 255 -333 1667 144 88 3 chr3 196699800 196700084 -30824494 - AluJb SINE Alu -4 308 1 534 314 52 42 chr3 196700084 196700190 -30824388 + MLT1K LTR MaLR 255 358 -230 551 328 79 26 chr3 196700241 196700470 -30824108 - MIR SINE MIR -1 261 21 1628 129 21 99 chr3 196700597 196700931 -30823647 + AluYb8 SINE Alu 1 308 -10 496 286 65 30 chr3 196700963 196701162 -30823416 + MLT1J LTR MaLR 237 442 -69 1600 129 10 68 chr3 196701164 196701474 -30823104 + AluJo SINE Alu 4 295 -17 1795 97 101 0 chr3 196701477 196701775 -30822803 + AluSx SINE Alu 1 324 0 365 303 83 23 chr3 196701775 196701907 -30822671 + MIR SINE MIR 111 250 -12 210 309 155 0 chr3 196701972 196702056 -30822522 - MER91B DNA MER1_type -1 189 93 2016 127 7 0 chr3 196702232 196702531 -30822047 - AluSx SINE Alu -11 301 1 210 150 0 0 chr3 196702732 196702772 -30821806 + (TCC)n Simple_repeat Simple_repeat 1 40 0 2167 121 3 0 chr3 196704195 196704502 -30820076 - AluSx SINE Alu -4 308 1 509 116 0 0 chr3 196704502 196704571 -30820007 - AluSq/x SINE Alu -176 136 68 188 139 0 23 chr3 196706417 196706460 -30818118 + (CCCCAG)n Simple_repeat Simple_repeat 4 45 0 815 171 0 0 chr3 196706644 196706767 -30817811 - FLAM_A SINE Alu -8 125 3 252 325 153 20 chr3 196707207 196707410 -30817168 - MIR SINE MIR -18 244 15 204 40 0 0 chr3 196707519 196707544 -30817034 + (T)n Simple_repeat Simple_repeat 1 25 0 318 262 27 45 chr3 196707610 196707749 -30816829 + G-rich Low_complexity Low_complexity 2 221 0 316 216 18 49 chr3 196708004 196708285 -30816293 + GA-rich Low_complexity Low_complexity 1 272 0 1426 98 5 0 chr3 196708869 196709063 -30815515 - AluSq SINE Alu -118 195 1 1662 173 13 35 chr3 196709093 196709411 -30815167 - AluJb SINE Alu -1 311 1 218 172 0 52 chr3 196709456 196709514 -30815064 + (CATA)n Simple_repeat Simple_repeat 2 56 0 421 256 30 48 chr3 196709525 196709693 -30814885 - L1ME3A LINE L1 -44 6126 5962 2286 55 27 7 chr3 196709723 196710015 -30814563 + AluY SINE Alu 1 298 -13 1862 115 0 71 chr3 196710015 196710338 -30814240 - AluSx SINE Alu -11 301 2 1790 121 3 65 chr3 196710432 196710738 -30813840 - AluJo SINE Alu -25 287 1 447 291 36 15 chr3 196710744 196710940 -30813638 - L1ME3A LINE L1 -219 5951 5752 2205 120 3 0 chr3 196711009 196711318 -30813260 - AluSx SINE Alu -2 310 1 1799 151 33 0 chr3 196711365 196711664 -30812914 + AluJo SINE Alu 1 309 -3 246 300 0 0 chr3 196711665 196711745 -30812833 + L1MC/D LINE L1 5694 5773 -2035 2181 124 0 0 chr3 196711754 196712060 -30812518 + AluSg SINE Alu 1 306 -4 2339 81 7 0 chr3 196712788 196713084 -30811494 - AluSq SINE Alu -15 298 1 941 121 0 40 chr3 196713304 196713453 -30811125 - FLAM_C SINE Alu 0 143 1 356 148 0 25 chr3 196713500 196713581 -30810997 + (TTCC)n Simple_repeat Simple_repeat 2 80 0 1618 160 42 42 chr3 196713582 196713894 -30810684 - AluJo SINE Alu 0 312 1 212 263 171 0 chr3 196714789 196714865 -30809713 - L2 LINE L2 -30 3283 3195 471 184 0 48 chr3 196714911 196715014 -30809564 + L2 LINE L2 3216 3313 0 845 123 0 0 chr3 196715134 196715248 -30809330 - FLAM_C SINE Alu -29 114 1 1235 177 52 32 chr3 196715776 196716024 -30808554 - AluJo SINE Alu -16 296 44 865 94 43 0 chr3 196716091 196716208 -30808370 - FLAM_C SINE Alu -15 128 7 872 231 36 0 chr3 196716820 196717015 -30807563 + MIR SINE MIR 61 262 0 2299 89 3 0 chr3 196717156 196717459 -30807119 + AluSx SINE Alu 6 309 -3 892 131 0 0 chr3 196717459 196717581 -30806997 - AluJo/FLAM SINE Alu -178 124 3 463 274 143 32 chr3 196717633 196717976 -30806602 + L1MC4 LINE L1 7573 7953 -89 1185 136 0 16 chr3 196717977 196718161 -30806417 - AluSg/x SINE Alu -12 298 118 840 167 8 0 chr3 196718235 196718367 -30806211 - FLAM_C SINE Alu 0 133 1 2206 105 3 0 chr3 196718379 196718675 -30805903 - AluSx SINE Alu -15 297 1 1868 148 0 39 chr3 196718734 196719044 -30805534 - AluJo SINE Alu -9 303 6 370 316 55 41 chr3 196719823 196720041 -30804537 + L2 LINE L2 3047 3267 -5 2166 131 0 0 chr3 196720405 196720717 -30803861 - AluJo SINE Alu 0 312 1 405 143 0 0 chr3 196720763 196720826 -30803752 - MER81 DNA DNA -50 64 2 1575 137 0 0 chr3 196721427 196721660 -30802918 - AluSx SINE Alu -47 265 33 2387 56 3 20 chr3 196721974 196722300 -30802278 + AluY SINE Alu 1 321 0 412 217 175 42 chr3 196722307 196722473 -30802105 - MIR SINE MIR -12 250 63 248 180 20 0 chr3 196722497 196722547 -30802031 - MIR SINE MIR -63 145 95 1393 251 73 37 chr3 196722796 196723220 -30801358 + L2 LINE L2 2639 3080 -233 2069 81 3 20 chr3 196723220 196723565 -30801013 + AluSc SINE Alu 1 340 0 1393 251 73 37 chr3 196723565 196723806 -30800772 + L2 LINE L2 3080 3311 -2 246 273 6 61 chr3 196724233 196724398 -30800180 + C-rich Low_complexity Low_complexity 2 157 0 265 344 25 38 chr3 196725050 196725211 -30799367 - MIR SINE MIR -68 140 19 2304 84 0 0 chr3 196727942 196728240 -30796338 - AluSx SINE Alu -14 298 1 303 163 0 0 chr3 196728903 196728983 -30795595 + C-rich Low_complexity Low_complexity 4 83 0 1074 129 18 0 chr3 196729560 196729723 -30794855 - AluJo/FRAM SINE Alu -13 299 134 1641 183 17 7 chr3 196729723 196730024 -30794554 - AluJo SINE Alu -8 304 1 425 248 78 0 chr3 196730024 196730153 -30794425 + L2 LINE L2 1823 1961 -1353 2177 98 3 0 chr3 196730226 196730513 -30794065 - AluSg SINE Alu -22 288 1 263 313 14 54 chr3 196731280 196731427 -30793151 + C-rich Low_complexity Low_complexity 4 144 0 479 245 86 25 chr3 196731465 196731628 -30792950 + L2 LINE L2 3075 3247 -25 216 0 0 0 chr3 196732688 196732712 -30791866 + (CCCTG)n Simple_repeat Simple_repeat 5 28 0 4140 77 28 15 chr3 196732763 196733309 -30791269 + MER41A LTR ERV1 1 553 -1 1259 240 85 3 chr3 196733309 196733750 -30790828 + L2 LINE L2 2582 3058 -255 1704 173 14 3 chr3 196733750 196734039 -30790539 - AluJb SINE Alu -20 292 1 662 324 58 4 chr3 196734108 196734349 -30790229 - MIR SINE MIR 0 262 9 293 268 24 82 chr3 196734915 196735108 -30789470 + L2 LINE L2 3027 3311 -2 205 246 127 102 chr3 196735608 196735668 -30788910 - MIR SINE MIR -25 237 180 2072 108 20 0 chr3 196735668 196735963 -30788615 + AluSx SINE Alu 1 301 -11 205 246 127 102 chr3 196735963 196736020 -30788558 - MIR SINE MIR -82 180 117 397 210 42 59 chr3 196736028 196736089 -30788489 + L2 LINE L2 3195 3255 -58 1939 134 0 7 chr3 196736089 196736372 -30788206 + AluJo SINE Alu 7 287 -25 397 210 42 59 chr3 196736372 196736429 -30788149 + L2 LINE L2 3255 3311 -2 348 270 30 10 chr3 196736474 196736574 -30788004 - MIR SINE MIR -57 205 104 2267 97 3 0 chr3 196736579 196736877 -30787701 + AluSx SINE Alu 1 299 -13 870 220 0 0 chr3 196737540 196737708 -30786870 - FRAM SINE Alu -8 168 1 2334 92 0 13 chr3 196737911 196738227 -30786351 + AluSx SINE Alu 1 312 0 360 220 64 18 chr3 196738230 196738339 -30786239 + L2 LINE L2 3193 3306 -7 2170 106 3 3 chr3 196738640 196738941 -30785637 - AluSx SINE Alu -8 304 4 294 346 0 8 chr3 196739269 196739341 -30785237 + (TTCA)n Simple_repeat Simple_repeat 4 76 -59 1771 161 13 10 chr3 196739341 196739651 -30784927 - AluJo SINE Alu -1 311 1 294 346 0 8 chr3 196739651 196739711 -30784867 + (TTCA)n Simple_repeat Simple_repeat 76 135 0 1963 222 50 21 chr3 196739713 196740002 -30784576 + L1M4c LINE L1 920 1199 -5185 1829 142 16 7 chr3 196740002 196740311 -30784267 + AluJo SINE Alu 1 312 0 1963 222 50 21 chr3 196740311 196740643 -30783935 + L1M4c LINE L1 1199 1559 -4825 244 188 0 31 chr3 196740643 196740739 -30783839 + (TCCA)n Simple_repeat Simple_repeat 4 96 0 228 67 0 0 chr3 196740850 196740880 -30783698 + (TTCA)n Simple_repeat Simple_repeat 1 30 0 2246 101 0 3 chr3 196741807 196742103 -30782475 + AluSx SINE Alu 7 301 -11 447 215 0 0 chr3 196742364 196742485 -30782093 + CT-rich Low_complexity Low_complexity 2 122 0 1981 112 3 14 chr3 196742939 196743225 -30781353 + AluSx SINE Alu 14 296 -16 220 186 0 0 chr3 196743304 196743347 -30781231 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 413 312 23 12 chr3 196743371 196743596 -30780982 + (TGGA)n Simple_repeat Simple_repeat 1 227 0 799 172 48 59 chr3 196743605 196743791 -30780787 + FRAM SINE Alu 1 176 0 1806 144 8 0 chr3 196743814 196744078 -30780500 + AluJo SINE Alu 16 281 -31 2062 128 0 13 chr3 196744081 196744393 -30780185 + AluSg SINE Alu 3 310 0 222 253 19 19 chr3 196744475 196744633 -30779945 + (TGGA)n Simple_repeat Simple_repeat 2 159 0 191 292 0 8 chr3 196744682 196744812 -30779766 + (TGGA)n Simple_repeat Simple_repeat 4 132 0 279 183 21 11 chr3 196744886 196744979 -30779599 + (TGGA)n Simple_repeat Simple_repeat 4 97 0 360 293 33 0 chr3 196745014 196745090 -30779488 + (TGGA)n Simple_repeat Simple_repeat 3 75 -82 2205 92 10 0 chr3 196745090 196745393 -30779185 + AluSg SINE Alu 1 306 -4 360 293 33 0 chr3 196745393 196745466 -30779112 + (TGGA)n Simple_repeat Simple_repeat 75 157 0 210 292 10 31 chr3 196746203 196746299 -30778279 + (TCCA)n Simple_repeat Simple_repeat 2 95 0 480 171 14 114 chr3 196746626 196746740 -30777838 + L2 LINE L2 3188 3287 -26 1366 205 13 26 chr3 196746740 196747042 -30777536 - AluJo SINE Alu -10 302 5 480 171 14 114 chr3 196747042 196747067 -30777511 + L2 LINE L2 3287 3313 0 313 221 44 0 chr3 196747179 196747247 -30777331 + L2 LINE L2 3243 3313 0 604 160 8 8 chr3 196747252 196747377 -30777201 + GA-rich Low_complexity Low_complexity 3 127 0 1631 139 136 0 chr3 196747428 196747686 -30776892 - AluSx SINE Alu -9 293 1 1789 181 3 0 chr3 196748985 196749273 -30775305 + AluJb SINE Alu 5 293 -19 483 256 64 6 chr3 196749352 196749508 -30775070 + L1MC5 LINE L1 7266 7430 -531 222 272 243 29 chr3 196749519 196749612 -30774966 - MER5A DNA MER1_type -7 182 64 2233 105 0 6 chr3 196749612 196749925 -30774653 - AluSx SINE Alu -1 311 1 866 181 0 31 chr3 196749934 196750094 -30774484 - AluJb SINE Alu -24 288 134 204 114 0 29 chr3 196750111 196750146 -30774432 - MER5A DNA MER1_type -152 37 4 229 246 0 97 chr3 196750151 196750285 -30774293 + L1MC5 LINE L1 7432 7552 -409 1685 174 0 58 chr3 196750285 196750613 -30773965 + AluJb SINE Alu 1 309 -3 319 188 0 0 chr3 196750628 196750692 -30773886 + Alu SINE Alu 238 301 -1 1573 162 68 0 chr3 196750704 196751008 -30773570 + AluJb SINE Alu 1 322 0 1047 212 49 57 chr3 196751011 196751287 -30773291 + L1MC5 LINE L1 7548 7822 -139 1925 167 0 3 chr3 196751287 196751598 -30772980 + AluJb SINE Alu 1 310 -2 1047 212 49 57 chr3 196751598 196751707 -30772871 + L1MC5 LINE L1 7822 7930 -31 1974 140 0 13 chr3 196751711 196752019 -30772559 + AluJo SINE Alu 1 304 -8 1815 175 0 16 chr3 196752019 196752333 -30772245 + AluJb SINE Alu 1 310 -2 344 313 54 0 chr3 196752417 196752529 -30772049 + L1MC4 LINE L1 7924 8041 -1 2021 128 0 0 chr3 196752663 196752945 -30771633 + AluSx SINE Alu 1 282 -30 193 202 0 53 chr3 196753570 196753664 -30770914 + GA-rich Low_complexity Low_complexity 2 90 0 2346 95 0 0 chr3 196754288 196754594 -30769984 + AluSx SINE Alu 1 306 -6 206 128 26 0 chr3 196754633 196754672 -30769906 + CT-rich Low_complexity Low_complexity 2 41 0 831 203 25 6 chr3 196754680 196754843 -30769735 - FRAM SINE Alu 0 166 1 370 205 68 122 chr3 196754843 196755044 -30769534 - MIR SINE MIR -43 219 27 772 165 6 51 chr3 196755066 196755098 -30769480 + MER1B DNA MER1_type 189 221 -2491 2075 131 0 13 chr3 196755098 196755234 -30769344 + AluSx SINE Alu 1 137 -175 2340 98 0 0 chr3 196755234 196755541 -30769037 + AluSg SINE Alu 1 307 -3 2075 131 0 13 chr3 196755541 196755716 -30768862 + AluSx SINE Alu 137 308 -4 772 165 6 51 chr3 196755716 196755841 -30768737 + MER1B DNA MER1_type 221 339 0 326 232 96 24 chr3 196756731 196756856 -30767722 - MER20B DNA MER1_type -607 176 43 1941 87 0 0 chr3 196756912 196757166 -30767412 + AluSx SINE Alu 57 310 -2 2303 92 16 0 chr3 196757168 196757472 -30767106 + AluSx SINE Alu 1 309 -3 268 310 10 10 chr3 196758431 196758531 -30766047 - MER91A DNA MER1_type 0 196 97 800 152 0 0 chr3 196758699 196758824 -30765754 - AluSg/x SINE Alu -14 298 174 1563 109 155 11 chr3 196758870 196759135 -30765443 - AluSg1 SINE Alu -6 303 1 995 149 0 6 chr3 196759135 196759316 -30765262 + LTR38B LTR ERV1 431 610 0 2105 119 0 7 chr3 196759334 196759636 -30764942 + AluSx SINE Alu 5 304 -8 2256 92 7 3 chr3 196759808 196760112 -30764466 - AluSx SINE Alu -7 305 1 1858 166 3 3 chr3 196760189 196760484 -30764094 - AluJo SINE Alu -17 295 1 680 258 16 0 chr3 196760578 196760760 -30763818 - L1ME3A LINE L1 -187 5983 5799 186 43 0 0 chr3 196760962 196760985 -30763593 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1868 137 7 18 chr3 196760989 196761273 -30763305 - AluSx SINE Alu -31 281 1 971 173 17 0 chr3 196761274 196761447 -30763131 - AluJb SINE Alu -8 304 129 23 0 0 0 chr3 196761447 196761470 -30763108 + AT_rich Low_complexity Low_complexity 1 23 0 1598 145 3 84 chr3 196761470 196761550 -30763028 - AluJo SINE Alu -21 291 206 955 193 0 6 chr3 196761550 196761711 -30762867 - FRAM SINE Alu -6 160 1 1598 145 3 84 chr3 196761711 196761941 -30762637 - AluJo SINE Alu -106 206 6 232 267 67 0 chr3 196762001 196762061 -30762517 - MIR SINE MIR -61 147 84 278 324 0 14 chr3 196762431 196762576 -30762002 + G-rich Low_complexity Low_complexity 2 144 0 819 170 21 0 chr3 196763278 196763523 -30761055 + (TGGA)n Simple_repeat Simple_repeat 1 250 0 425 176 0 0 chr3 196763524 196763598 -30760980 - AluJo SINE Alu -144 168 95 982 102 6 17 chr3 196763624 196763801 -30760777 + (TGGA)n Simple_repeat Simple_repeat 1 175 0 228 317 11 60 chr3 196764402 196764585 -30759993 + (TTAGGG)n Simple_repeat Simple_repeat 3 176 0 2329 70 10 0 chr3 196764930 196765231 -30759347 + AluY SINE Alu 1 304 -7 223 316 0 0 chr3 196765268 196765325 -30759253 + (TTGGGG)n Simple_repeat Simple_repeat 2 58 0 2255 94 3 0 chr3 196765940 196766248 -30758330 - AluSp SINE Alu -4 309 1 1787 149 20 14 chr3 196766248 196766542 -30758036 - AluJo SINE Alu -16 296 1 391 319 6 16 chr3 196767324 196767424 -30757154 + CT-rich Low_complexity Low_complexity 1 100 -80 2418 90 0 0 chr3 196767424 196767736 -30756842 - AluSx SINE Alu 0 312 1 391 319 6 16 chr3 196767736 196767817 -30756761 + CT-rich Low_complexity Low_complexity 100 180 0 2057 130 0 34 chr3 196768523 196768846 -30755732 + AluSx SINE Alu 1 312 0 533 227 13 58 chr3 196768858 196769012 -30755566 + L2 LINE L2 3121 3267 -5 233 322 58 33 chr3 196769030 196769151 -30755427 + MIR SINE MIR 125 248 -14 514 296 10 46 chr3 196769378 196769574 -30755004 - MIR SINE MIR 0 262 74 2334 96 0 0 chr3 196769657 196769958 -30754620 - AluSx SINE Alu -11 301 1 200 189 0 0 chr3 196769958 196769986 -30754592 + CT-rich Low_complexity Low_complexity 2 32 -6 1865 133 31 0 chr3 196769986 196770272 -30754306 - AluJo SINE Alu -7 305 11 208 219 21 0 chr3 196770319 196770379 -30754199 + MIR SINE MIR 90 151 -57 536 210 0 20 chr3 196770452 196770552 -30754026 - FLAM_C SINE Alu -15 128 31 1111 123 18 0 chr3 196770552 196770715 -30753863 - AluSg/x SINE Alu -5 307 142 2174 84 0 24 chr3 196770718 196771035 -30753543 - AluSq SINE Alu 0 313 1 235 167 0 0 chr3 196771037 196771079 -30753499 - Alu SINE Alu -258 42 1 2159 118 20 0 chr3 196772812 196773138 -30751440 + AluSx SINE Alu 1 332 0 310 321 83 18 chr3 196773768 196773936 -30750642 + L1MEd LINE L1 979 1157 -4962 410 143 12 60 chr3 196774620 196774655 -30749923 + MADE1 DNA Mariner 1 36 -44 2555 61 0 0 chr3 196774655 196774966 -30749612 - AluY SINE Alu 0 311 1 410 143 12 60 chr3 196774966 196775014 -30749564 + MADE1 DNA Mariner 36 80 0 2318 76 0 20 chr3 196775153 196775456 -30749122 + AluSx SINE Alu 5 301 -11 2204 85 3 23 chr3 196775457 196775763 -30748815 + AluSc SINE Alu 2 301 -8 221 262 0 0 chr3 196776905 196776966 -30747612 + T-rich Low_complexity Low_complexity 1 61 0 1807 165 45 3 chr3 196777012 196777393 -30747185 + MER82 DNA MER2_type 1 397 -256 2180 114 0 10 chr3 196777393 196777700 -30746878 + AluSx SINE Alu 3 306 -6 189 200 109 0 chr3 196777789 196777844 -30746734 + MIR SINE MIR 61 121 -141 * 637 217 255 19 chr3 196777826 196778214 -30746364 + L2 LINE L2 2735 3243 -70 416 274 38 0 chr3 196779003 196779109 -30745469 - MIR SINE MIR -58 150 41 1710 147 41 14 chr3 196779284 196779576 -30745002 - AluJb SINE Alu -12 300 1 909 118 0 15 chr3 196779589 196779724 -30744854 - FLAM_C SINE Alu 0 133 1 298 179 64 13 chr3 196780121 196780277 -30744301 + (TCTCTG)n Simple_repeat Simple_repeat 3 166 0 1232 267 33 85 chr3 196780440 196780714 -30743864 + L2 LINE L2 2184 2471 -843 1735 220 90 72 chr3 196780714 196780931 -30743647 + LTR9 LTR ERV1 1 213 -399 201 39 0 0 chr3 196780931 196780957 -30743621 + (TTTA)n Simple_repeat Simple_repeat 3 28 0 1735 220 90 72 chr3 196780957 196781340 -30743238 + LTR9 LTR ERV1 213 612 0 1232 267 33 85 chr3 196781340 196781698 -30742880 + L2 LINE L2 2471 2783 -531 838 143 0 34 chr3 196781699 196781846 -30742732 + FLAM_C SINE Alu 1 142 -1 535 270 45 6 chr3 196781860 196782038 -30742540 + L2 LINE L2 2791 2975 -339 247 313 104 0 chr3 196782092 196782188 -30742390 + L2 LINE L2 3158 3263 -9 334 290 54 59 chr3 196782198 196782240 -30742338 - L1MCa LINE L1 -4016 2410 2369 2320 99 0 3 chr3 196782240 196782553 -30742025 - AluSq SINE Alu -1 312 1 334 290 54 59 chr3 196782553 196782696 -30741882 - L1MCa LINE L1 -4057 2369 2226 831 112 0 9 chr3 196782796 196782912 -30741666 - FRAM SINE Alu -39 137 23 987 120 0 0 chr3 196783448 196783581 -30740997 - FLAM_C SINE Alu 0 133 1 2253 99 3 10 chr3 196783857 196784171 -30740407 - AluSx SINE Alu 0 312 1 2134 120 0 0 chr3 196784171 196784472 -30740106 - AluSx SINE Alu -11 301 1 1579 166 35 17 chr3 196784472 196784659 -30739919 - AluJb SINE Alu 0 312 118 206 32 32 0 chr3 196784659 196784690 -30739888 + (TTTTA)n Simple_repeat Simple_repeat 3 34 0 1579 166 35 17 chr3 196784690 196784811 -30739767 - AluJb SINE Alu -194 118 1 2002 110 14 4 chr3 196785714 196786024 -30738554 - AluSq SINE Alu 0 313 1 296 80 0 0 chr3 196786488 196786538 -30738040 - AluSx SINE Alu 0 301 252 1561 119 5 0 chr3 196786538 196786756 -30737822 - AluSx SINE Alu -93 219 1 21 0 0 0 chr3 196790389 196790410 -30734168 + AT_rich Low_complexity Low_complexity 1 21 0 1620 137 24 0 chr3 196791168 196791416 -30733162 - AluSx SINE Alu 0 312 59 950 186 0 6 chr3 196791422 196791589 -30732989 - FRAM SINE Alu -14 162 1 445 239 17 8 chr3 196791589 196791706 -30732872 - MIR SINE MIR -117 145 28 2142 112 3 3 chr3 196791926 196792231 -30732347 + AluSx SINE Alu 3 307 -5 1914 93 35 58 chr3 196792232 196792544 -30732034 + AluSp SINE Alu 1 305 -8 900 227 124 83 chr3 196792611 196792719 -30731859 - L2 LINE L2 -3 3310 3208 1426 177 3 71 chr3 196792719 196792813 -30731765 + AluJb SINE Alu 1 100 -212 2389 76 0 0 chr3 196792813 196793116 -30731462 + AluY SINE Alu 1 303 -8 1426 177 3 71 chr3 196793116 196793343 -30731235 + AluJb SINE Alu 100 300 -12 900 227 124 83 chr3 196793343 196793701 -30730877 - L2 LINE L2 -105 3208 2825 958 179 6 0 chr3 196793727 196793895 -30730683 - FRAM SINE Alu -13 163 1 1708 179 0 3 chr3 196793907 196794198 -30730380 - AluJo SINE Alu -22 290 1 352 271 0 47 chr3 196794206 196794313 -30730265 - MIR SINE MIR -108 154 53 2402 91 0 0 chr3 196794380 196794689 -30729889 + AluSx SINE Alu 1 309 -3 184 311 52 59 chr3 196794702 196794837 -30729741 + MER5A DNA MER1_type 50 183 -6 299 337 22 22 chr3 196794859 196795040 -30729538 - MER112 DNA MER1_type -24 236 56 756 188 35 0 chr3 196795049 196795219 -30729359 + L1ME2 LINE L1 5710 5885 -279 1700 191 0 7 chr3 196795222 196795521 -30729057 + AluJb SINE Alu 1 297 -15 2322 99 0 3 chr3 196795521 196795835 -30728743 + AluSq SINE Alu 1 313 0 2208 94 0 20 chr3 196795982 196796281 -30728297 - AluSx SINE Alu -19 293 1 340 311 31 56 chr3 196796462 196796658 -30727920 + MIR SINE MIR 68 258 -4 182 133 0 44 chr3 196797190 196797235 -30727343 + (CAGAGA)n Simple_repeat Simple_repeat 2 44 0 294 250 139 1 chr3 196798247 196798366 -30726212 - MIR SINE MIR -58 150 32 790 210 37 96 chr3 196798374 196798401 -30726177 + MIR SINE MIR 8 35 -227 2039 101 26 33 chr3 196798401 196798707 -30725871 + AluSx SINE Alu 1 304 -8 790 210 37 96 chr3 196798707 196798950 -30725628 + MIR SINE MIR 35 262 0 2135 92 11 0 chr3 196798951 196799258 -30725320 - AluSq SINE Alu 0 310 1 1920 171 0 0 chr3 196799276 196799575 -30725003 + AluSx SINE Alu 1 299 -13 201 256 22 22 chr3 196799744 196799834 -30724744 + (TATAA)n Simple_repeat Simple_repeat 2 91 0 349 388 89 17 chr3 196799914 196800262 -30724316 - L1ME3A LINE L1 -215 5955 5583 313 315 6 44 chr3 196800284 196800389 -30724189 - L1ME3A LINE L1 -624 5542 5445 1864 176 0 6 chr3 196800389 196800701 -30723877 - AluJo SINE Alu 0 312 3 313 315 6 44 chr3 196800701 196800776 -30723802 - L1ME3A LINE L1 -721 5445 5369 1959 117 27 10 chr3 196800821 196801119 -30723459 - AluSx SINE Alu -9 303 1 884 118 0 0 chr3 196801119 196801238 -30723340 - AluSq/x SINE Alu -176 136 18 2010 149 0 13 chr3 196801330 196801646 -30722932 - AluSx SINE Alu 0 312 1 821 129 0 24 chr3 196801752 196801876 -30722702 + FLAM_C SINE Alu 21 141 -2 416 220 127 20 chr3 196802449 196802599 -30721979 + L1ME LINE L1 5616 5781 -389 1477 180 3 48 chr3 196802600 196802911 -30721667 + AluJo SINE Alu 1 297 -15 521 244 12 58 chr3 196802911 196803083 -30721495 + MER83 LTR ERV1 27 190 -258 1910 123 53 0 chr3 196803083 196803367 -30721211 + AluSx SINE Alu 7 305 -7 576 310 79 25 chr3 196803394 196803476 -30721102 + L1ME3A LINE L1 5736 5812 -358 2233 81 0 3 chr3 196803476 196803791 -30720787 - AluSx SINE Alu 0 314 1 576 310 79 25 chr3 196803791 196804114 -30720464 + L1ME3A LINE L1 5812 6164 -6 1850 156 3 23 chr3 196804342 196804519 -30720059 - AluJb SINE Alu -4 308 138 2303 68 7 0 chr3 196804519 196804811 -30719767 - AluSp SINE Alu -19 294 1 1850 156 3 23 chr3 196804811 196804940 -30719638 - AluJb SINE Alu -174 138 8 331 250 11 0 chr3 196804986 196805078 -30719500 + MIR SINE MIR 169 261 -1 465 269 37 15 chr3 196806289 196806423 -30718155 + MIR SINE MIR 56 192 -70 792 214 10 70 chr3 196806434 196806521 -30718057 - MER5A DNA MER1_type 0 189 98 2354 85 0 3 chr3 196806521 196806827 -30717751 - AluSc SINE Alu -4 305 1 792 214 10 70 chr3 196806827 196806940 -30717638 - MER5A DNA MER1_type -91 98 1 1439 179 7 52 chr3 196807007 196807298 -30717280 + AluJo SINE Alu 10 287 -25 2199 128 0 0 chr3 196807311 196807623 -30716955 + AluSx SINE Alu 1 312 0 336 287 0 11 chr3 196807628 196807722 -30716856 - MIR SINE MIR -96 166 74 2221 88 0 0 chr3 196807853 196808176 -30716402 - AluSx SINE Alu 0 323 1 1914 160 3 3 chr3 196808176 196808482 -30716096 - AluSx SINE Alu 0 312 7 2460 106 172 81 chr3 196808826 196809309 -30715269 - MER1A DNA MER1_type 0 527 1 190 303 40 40 chr3 196809796 196809872 -30714706 + MIR3 SINE MIR 87 162 -46 286 91 36 0 chr3 196809933 196809988 -30714590 + (TA)n Simple_repeat Simple_repeat 1 57 0 2242 119 0 0 chr3 196809990 196810301 -30714277 - AluSx SINE Alu -1 311 1 411 262 23 38 chr3 196810362 196810505 -30714073 - MIR SINE MIR -70 138 2 228 161 74 49 chr3 196812023 196812039 -30712539 + MIR SINE MIR 180 194 -68 1927 112 0 4 chr3 196812039 196812308 -30712270 + AluSx SINE Alu 43 310 -2 228 161 74 49 chr3 196812308 196812372 -30712206 + MIR SINE MIR 194 262 0 335 253 13 0 chr3 196812374 196812453 -30712125 + MIR SINE MIR 91 170 -92 182 91 30 0 chr3 196812633 196812666 -30711912 + (TG)n Simple_repeat Simple_repeat 1 34 0 534 240 78 7 chr3 196812819 196812973 -30711605 + MIR SINE MIR 72 236 -26 207 182 0 0 chr3 196813763 196813796 -30710782 + polypyrimidine Low_complexity Low_complexity 1 33 0 198 321 49 12 chr3 196814960 196815041 -30709537 - L2 LINE L2 -437 2877 2794 1558 150 3 104 chr3 196815116 196815240 -30709338 + AluJo SINE Alu 1 136 -176 2323 87 3 3 chr3 196815240 196815549 -30709029 - AluSx SINE Alu -3 309 1 1558 150 3 104 chr3 196815549 196815654 -30708924 + AluJo SINE Alu 136 250 -62 2089 127 0 0 chr3 196815654 196815954 -30708624 - AluSx SINE Alu -12 300 1 1558 150 3 104 chr3 196815954 196816058 -30708520 + AluJo SINE Alu 250 301 -11 2199 106 3 3 chr3 196816058 196816370 -30708208 + AluSx SINE Alu 1 312 0 1558 150 3 104 chr3 196816370 196816381 -30708197 + AluJo SINE Alu 301 312 0 568 269 88 56 chr3 196816965 196817105 -30707473 + MIR SINE MIR 2 154 -108 2156 72 3 28 chr3 196817105 196817432 -30707146 + AluSp SINE Alu 1 320 0 568 269 88 56 chr3 196817432 196817506 -30707072 + MIR SINE MIR 154 224 -38 2100 99 18 3 chr3 196817506 196817790 -30706788 + AluSx SINE Alu 1 288 -24 550 256 0 15 chr3 196868317 196868450 -30656128 - MER94 DNA DNA -1 133 3 2216 93 11 0 chr3 196869859 196870164 -30654414 - AluSx SINE Alu 0 308 1 186 188 21 21 chr3 196871064 196871112 -30653466 + L2 LINE L2 3262 3309 -4 2134 118 7 3 chr3 196871525 196871831 -30652747 - AluSx SINE Alu -5 307 1 2325 97 0 0 chr3 196872642 196872940 -30651638 - AluSx SINE Alu -14 298 1 1152 126 0 24 chr3 196875286 196875453 -30649125 - MLT1B LTR MaLR 0 390 228 2162 138 51 28 chr3 196875453 196875809 -30648769 - THE1B LTR MaLR 0 364 1 340 21 21 0 chr3 196875816 196875863 -30648715 - THE1B-int LTR MaLR -7 1573 1526 219 36 0 0 chr3 196876357 196876385 -30648193 + (TA)n Simple_repeat Simple_repeat 2 29 0 1554 161 38 4 chr3 196876545 196876812 -30647766 - AluJo SINE Alu -2 310 35 25 51 0 0 chr3 196876838 196876877 -30647701 + AT_rich Low_complexity Low_complexity 1 39 0 272 125 0 0 chr3 196877744 196877784 -30646794 - MADE1 DNA Mariner -40 40 1 548 262 51 50 chr3 196878435 196878674 -30645904 + MIR SINE MIR 24 262 0 2166 129 36 24 chr3 196879702 196880035 -30644543 + MER1B DNA MER1_type 1 337 0 2171 193 61 20 chr3 196880428 196880885 -30643693 - MLT1D LTR MaLR -7 498 23 254 302 0 0 chr3 196881050 196881113 -30643465 + L2 LINE L2 3248 3310 -3 437 263 59 13 chr3 196881223 196881375 -30643203 + MIR SINE MIR 31 189 -73 251 0 0 56 chr3 196882113 196882149 -30642429 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 1912 103 4 15 chr3 196882152 196882423 -30642155 - AluY SINE Alu -30 281 14 280 296 225 22 chr3 196882718 196883086 -30641492 + L2 LINE L2 2621 3064 -249 939 202 58 18 chr3 196884294 196884517 -30640061 + MLT1B LTR MaLR 1 232 -158 2375 112 48 25 chr3 196884517 196884873 -30639705 + THE1B LTR MaLR 1 364 0 10833 94 25 6 chr3 196884873 196886332 -30638246 + THE1B-int LTR MaLR 1 1486 -94 1968 170 32 68 chr3 196887041 196887093 -30637485 + MSTD LTR MaLR 1 53 -343 2474 64 3 6 chr3 196887093 196887405 -30637173 + AluY SINE Alu 1 311 0 1968 170 32 68 chr3 196887405 196887763 -30636815 + MSTD LTR MaLR 53 396 0 725 128 10 0 chr3 196888278 196888380 -30636198 + AluSq/x SINE Alu 2 104 -209 572 291 12 29 chr3 196888588 196888829 -30635749 - 7SLRNA srpRNA srpRNA -35 285 49 1410 203 136 9 chr3 196890763 196891191 -30633387 + Charlie4a DNA MER1_type 24 505 -3 235 271 213 62 chr3 196891889 196892129 -30632449 + L2 LINE L2 2992 3267 -5 186 317 85 12 chr3 196892445 196892527 -30632051 - L2 LINE L2 -49 3223 3136 1279 167 75 71 chr3 196896532 196896813 -30627765 - AluJo SINE Alu -30 282 1 29 28 0 0 chr3 196896841 196896877 -30627701 + AT_rich Low_complexity Low_complexity 1 36 0 180 0 0 0 chr3 196897002 196897022 -30627556 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 1281 251 193 24 chr3 196897515 196898008 -30626570 + MLT1G LTR MaLR 2 577 -13 1750 78 0 168 chr3 196898157 196898532 -30626046 + AluSg1 SINE Alu 1 319 0 323 199 36 12 chr3 196899519 196899601 -30624977 - MER58 DNA MER1_type -93 122 39 219 280 53 0 chr3 196899640 196899715 -30624863 + L2 LINE L2 3194 3272 0 296 207 0 12 chr3 196900928 196901004 -30623574 - MIR SINE MIR -71 137 64 1221 78 7 0 chr3 196902404 196902608 -30621970 + AluSg/x SINE Alu 133 337 0 1801 154 3 3 chr3 196903604 196903919 -30620659 + AluJo SINE Alu 1 315 0 1279 174 0 5 chr3 196904219 196904432 -30620146 + 7SLRNA srpRNA srpRNA 105 316 -4 1378 187 84 7 chr3 196904988 196905272 -30619306 - AluJb SINE Alu -6 306 1 32 0 0 0 chr3 196905857 196905889 -30618689 + AT_rich Low_complexity Low_complexity 1 32 0 237 229 83 73 chr3 196905906 196906002 -30618576 - L2 LINE L2 0 3272 3176 186 43 0 0 chr3 196906593 196906616 -30617962 + (A)n Simple_repeat Simple_repeat 1 23 0 2445 83 0 10 chr3 196906674 196906988 -30617590 - AluY SINE Alu 0 311 1 351 270 26 35 chr3 196907027 196907142 -30617436 + MIR SINE MIR 77 190 -72 184 240 0 20 chr3 196907188 196907238 -30617340 - MIR SINE MIR -28 234 186 1926 137 14 67 chr3 196911089 196911448 -30613130 - MLT1B LTR MaLR 0 390 51 411 203 22 101 chr3 196912787 196912925 -30611653 + L1MC4 LINE L1 6934 7060 -982 512 239 66 30 chr3 196912950 196913310 -30611268 + L1MC4 LINE L1 7128 7569 -473 711 224 85 22 chr3 196913469 196913692 -30610886 - L2 LINE L2 -2 3311 3075 558 226 36 92 chr3 196913725 196913778 -30610800 - MER3 DNA MER1_type -25 184 130 2138 109 7 0 chr3 196913778 196914071 -30610507 + AluSp SINE Alu 1 295 -18 558 226 36 92 chr3 196914071 196914212 -30610366 - MER3 DNA MER1_type -79 130 1 1330 267 78 72 chr3 196914216 196914388 -30610190 - L2 LINE L2 -250 3063 2894 2298 101 0 10 chr3 196914388 196914696 -30609882 + AluY SINE Alu 1 305 -6 1330 267 78 72 chr3 196914696 196915240 -30609338 - L2 LINE L2 -419 2894 2345 891 169 16 71 chr3 196915799 196915982 -30608596 - MER2 DNA MER2_type -172 173 1 1987 92 7 18 chr3 196918344 196918626 -30605952 + AluY SINE Alu 1 279 -32 409 149 0 0 chr3 196919462 196919536 -30605042 + AluS SINE Alu 230 303 -6 2184 105 0 13 chr3 196919918 196920222 -30604356 + AluSx SINE Alu 3 302 -10 2111 108 7 3 chr3 196921458 196921754 -30602824 - AluSx SINE Alu -15 297 1 249 248 240 16 chr3 196923436 196923565 -30601013 - MIR3 SINE MIR -50 158 1 232 267 11 44 chr3 196923758 196923848 -30600730 + GA-rich Low_complexity Low_complexity 1 87 0 208 289 0 0 chr3 196924172 196924217 -30600361 + (CACG)n Simple_repeat Simple_repeat 2 46 0 2364 59 3 39 chr3 196924948 196925255 -30599323 - AluY SINE Alu -10 301 6 26 30 0 0 chr3 196928868 196928901 -30595677 + AT_rich Low_complexity Low_complexity 1 33 0 903 145 26 13 chr3 196929590 196929742 -30594836 - AluJ SINE Alu -30 282 129 337 261 78 21 chr3 196930838 196930980 -30593598 - MIR SINE MIR -75 187 38 1902 120 0 0 chr3 196931436 196931695 -30592883 - AluSx SINE Alu -12 300 42 238 288 0 0 chr3 196931934 196931993 -30592585 + MER5A DNA MER1_type 51 109 -80 400 250 76 0 chr3 196932125 196932217 -30592361 + L2 LINE L2 3170 3268 -4 2268 105 0 3 chr3 196932927 196933223 -30591355 - AluSq SINE Alu -17 296 2 749 136 56 8 chr3 196933228 196933353 -30591225 - AluJ SINE Alu -179 133 3 253 298 37 64 chr3 196933773 196933961 -30590617 + L2 LINE L2 2878 3060 -212 207 156 0 0 chr3 196934504 196934536 -30590042 + (TG)n Simple_repeat Simple_repeat 1 32 0 1949 109 76 4 chr3 196934589 196934865 -30589713 - AluSx SINE Alu -16 296 1 241 297 55 44 chr3 196935033 196935124 -30589454 + MIR3 SINE MIR 82 173 -35 396 88 0 0 chr3 196935211 196935268 -30589310 + (CA)n Simple_repeat Simple_repeat 1 57 0 635 264 37 12 chr3 196935384 196935547 -30589031 + MER5A DNA MER1_type 23 189 0 209 116 0 47 chr3 196937892 196937935 -30586643 + (GAAAA)n Simple_repeat Simple_repeat 5 45 0 2209 112 7 0 chr3 196939720 196940015 -30584563 + AluJb SINE Alu 1 297 -15 1273 244 42 42 chr3 196940290 196940695 -30583883 + MLT1D LTR MaLR 57 461 -44 686 194 8 52 chr3 196940701 196940835 -30583743 + FLAM_A SINE Alu 1 128 -5 1824 124 7 38 chr3 196942877 196943168 -30581410 + AluJb SINE Alu 1 282 -30 1552 121 9 13 chr3 196944453 196944685 -30579893 - AluJo SINE Alu -24 288 58 2308 91 10 0 chr3 196945295 196945593 -30578985 + AluSq SINE Alu 1 301 -12 27 62 0 0 chr3 196945740 196945788 -30578790 + AT_rich Low_complexity Low_complexity 1 48 0 183 250 115 42 chr3 196946686 196946782 -30577796 + MIR SINE MIR 82 184 -78 239 93 23 0 chr3 196947342 196947385 -30577193 + (CTTA)n Simple_repeat Simple_repeat 4 47 0 477 0 0 0 chr3 196948354 196948407 -30576171 + (CA)n Simple_repeat Simple_repeat 2 54 0 270 257 14 14 chr3 196948922 196948992 -30575586 + L2 LINE L2 3242 3311 -2 3263 184 54 13 chr3 196949159 196949480 -30575098 + L1MB8 LINE L1 4871 5177 -1001 2148 127 0 34 chr3 196949480 196949803 -30574775 + AluSx SINE Alu 1 312 0 3263 184 54 13 chr3 196949803 196950577 -30574001 + L1MB8 LINE L1 5177 6007 -171 2253 120 0 0 chr3 196951168 196951469 -30573109 - AluSx SINE Alu -11 301 1 822 229 103 41 chr3 196952360 196952727 -30571851 + L1MC5 LINE L1 7187 7576 -385 334 201 190 92 chr3 196952823 196953007 -30571571 + L1MC5 LINE L1 7734 7935 -26 444 284 10 61 chr3 196953019 196953097 -30571481 + Charlie8 DNA MER1_type 95 175 -2242 2149 120 3 3 chr3 196953097 196953396 -30571182 - AluSx SINE Alu -13 299 1 444 284 10 61 chr3 196953396 196953514 -30571064 + Charlie8 DNA MER1_type 175 281 -2136 343 271 23 0 chr3 196954900 196955029 -30569549 + (TA)n Simple_repeat Simple_repeat 2 133 0 246 116 0 0 chr3 196955062 196955091 -30569487 + (CA)n Simple_repeat Simple_repeat 1 72 0 246 116 0 0 chr3 196955091 196955134 -30569444 + (CA)n Simple_repeat Simple_repeat 1 43 0 1584 186 25 4 chr3 196956121 196956425 -30568153 - AluJb SINE Alu 0 311 2 379 282 19 10 chr3 196956854 196956957 -30567621 - MIR SINE MIR -96 166 63 267 329 55 41 chr3 196958103 196958249 -30566329 - MIR3 SINE MIR -58 150 3 21 71 0 0 chr3 196958441 196958483 -30566095 + AT_rich Low_complexity Low_complexity 1 42 0 269 217 33 0 chr3 196959546 196959606 -30564972 + (TAAA)n Simple_repeat Simple_repeat 3 64 0 635 221 0 0 chr3 196959889 196960011 -30564567 + L1MC4 LINE L1 7550 7671 -371 328 297 0 59 chr3 196961019 196961137 -30563441 + LTR16C LTR ERVL 261 371 -120 618 154 29 9 chr3 196961137 196961267 -30563311 + MSTA LTR MaLR 1 140 -235 316 237 71 108 chr3 196961368 196961487 -30563091 + L1MC4 LINE L1 7758 7880 -162 2454 51 0 3 chr3 196961487 196961779 -30562799 + AluY SINE Alu 1 291 -20 316 237 71 108 chr3 196961779 196961954 -30562624 + L1MC4 LINE L1 7880 8041 -1 649 314 82 22 chr3 196961965 196962284 -30562294 + MER102b DNA MER1_type 4 341 0 722 185 219 54 chr3 196962321 196962526 -30562052 + MER8 DNA MER2_type 1 239 0 194 351 130 0 chr3 196962637 196962822 -30561756 - L2 LINE L2 -543 2771 2563 380 357 34 31 chr3 196965357 196965651 -30558927 + L2 LINE L2 2478 2772 -542 558 306 96 38 chr3 196966955 196967350 -30557228 - L2 LINE L2 -555 2759 2342 237 294 143 74 chr3 196967520 196967751 -30556827 - L2 LINE L2 -50 3222 2976 240 330 103 43 chr3 196967787 196968020 -30556558 + L2 LINE L2 2974 3220 -93 1991 124 52 3 chr3 196969478 196969768 -30554810 + AluSx SINE Alu 2 305 -7 909 201 18 0 chr3 196971017 196971181 -30553397 + FAM SINE Alu 1 167 -8 236 203 14 0 chr3 196973091 196973160 -30551418 + (TA)n Simple_repeat Simple_repeat 1 70 0 445 255 45 89 chr3 196974275 196974522 -30550056 - MER102b DNA MER1_type -3 338 103 1283 197 55 54 chr3 196974581 196974921 -30549657 + MLT1A2 LTR MaLR 1 405 -23 487 242 18 57 chr3 196974954 196975181 -30549397 - L1MC4 LINE L1 -72 7970 7753 21 43 0 0 chr3 196975475 196975498 -30549080 + AT_rich Low_complexity Low_complexity 1 23 0 1027 69 8 0 chr3 196975498 196975628 -30548950 - AluSg SINE Alu -179 131 1 194 268 0 0 chr3 196976100 196976141 -30548437 + L2 LINE L2 3265 3305 -8 2335 96 3 0 chr3 196976419 196976720 -30547858 - AluSp SINE Alu -5 308 7 21 82 0 0 chr3 196977458 196977507 -30547071 + AT_rich Low_complexity Low_complexity 1 49 0 22 56 0 0 chr3 196978069 196978105 -30546473 + AT_rich Low_complexity Low_complexity 1 36 0 2173 113 6 6 chr3 196978603 196978914 -30545664 + AluSq SINE Alu 1 311 -2 1137 192 173 4 chr3 196979626 196979928 -30544650 - AluJo SINE Alu 0 346 2 2308 79 34 0 chr3 196980027 196980318 -30544260 + AluSc SINE Alu 1 301 -8 2025 96 11 7 chr3 196980705 196981017 -30543561 - AluY SINE Alu 0 313 1 707 122 114 0 chr3 196982256 196982379 -30542199 - L1PA16 LINE L1 -7 6159 6023 8195 124 15 60 chr3 196982392 196983367 -30541211 - L1MA3 LINE L1 -7 6298 5280 2536 69 0 0 chr3 196983367 196983672 -30540906 - AluY SINE Alu -6 305 1 8195 124 15 60 chr3 196983672 196984169 -30540409 - L1MA3 LINE L1 -1025 5280 4762 722 58 0 0 chr3 196984169 196984256 -30540322 + AluY SINE Alu 204 290 -21 8195 124 15 60 chr3 196984256 196985494 -30539084 - L1MA3 LINE L1 -1543 4762 3632 2717 136 17 10 chr3 196985485 196985964 -30538614 - L1PA16 LINE L1 -119 6047 5566 * 1270 251 50 4 chr3 196987128 196987603 -30536975 - L1M4 LINE L1 -2868 3278 2782 261 333 9 19 chr3 196987660 196987765 -30536813 + MIR3 SINE MIR 5 108 -100 452 164 69 35 chr3 196987940 196988056 -30536522 - L1MA7 LINE L1 -13 6278 6159 * 4274 153 18 5 chr3 196988052 196988860 -30535718 - L1MA8 LINE L1 -235 6056 5237 2588 106 22 3 chr3 196988860 196989228 -30535350 + THE1C LTR MaLR 1 375 0 4274 153 18 5 chr3 196989228 196989411 -30535167 - L1MA8 LINE L1 -1054 5237 5058 326 301 40 28 chr3 196989511 196989687 -30534891 + L1ME4a LINE L1 5718 5895 -226 300 158 0 0 chr3 196989708 196989765 -30534813 + (TG)n Simple_repeat Simple_repeat 1 57 0 286 287 46 46 chr3 196989864 196989951 -30534627 + L2 LINE L2 3173 3259 -54 26 0 0 0 chr3 196991470 196991496 -30533082 + AT_rich Low_complexity Low_complexity 1 26 0 490 329 45 31 chr3 196993725 196994152 -30530426 + L2 LINE L2 2638 3073 -199 356 315 145 40 chr3 196994358 196994469 -30530109 - L2 LINE L2 -1471 1843 1745 1638 203 21 27 chr3 196994469 196994843 -30529735 - MLT1A2 LTR MaLR 0 374 3 356 315 145 40 chr3 196994843 196995229 -30529349 - L2 LINE L2 -1569 1745 1294 1451 170 42 14 chr3 196995235 196995523 -30529055 + MLT1A1 LTR MaLR 1 296 -69 227 365 19 6 chr3 196995553 196995709 -30528869 - L2 LINE L2 -2421 893 736 27 29 0 0 chr3 196996205 196996239 -30528339 + AT_rich Low_complexity Low_complexity 1 34 0 864 204 65 56 chr3 196996429 196996657 -30527921 + MER114 LTR ERV 89 313 -335 2242 104 7 13 chr3 196996657 196996964 -30527614 + AluY SINE Alu 1 305 -6 864 204 65 56 chr3 196996964 196997242 -30527336 + MER114 LTR ERV 313 646 -2 2392 94 0 13 chr3 196997248 196997557 -30527021 - AluY SINE Alu -6 305 1 2160 155 43 32 chr3 196997755 196998019 -30526559 - MSTB2 LTR MaLR 0 457 197 1980 117 59 42 chr3 196998019 196998377 -30526201 - THE1B LTR MaLR 0 364 1 11876 92 2 7 chr3 196998377 196999964 -30524614 - THE1B-int LTR MaLR 0 1580 1 2060 123 45 36 chr3 196999966 197000325 -30524253 - THE1B LTR MaLR -2 362 1 2160 155 43 32 chr3 197000325 197000494 -30524084 - MSTB2 LTR MaLR -260 197 15 255 31 0 0 chr3 197000522 197000554 -30524024 + (TTC)n Simple_repeat Simple_repeat 2 33 0 1899 110 8 8 chr3 197000557 197000811 -30523767 - AluSx SINE Alu -33 279 26 2215 98 3 0 chr3 197001583 197001869 -30522709 - AluSx SINE Alu -25 287 1 1925 108 69 11 chr3 197002760 197003037 -30521541 + AluSp SINE Alu 1 293 -20 539 293 53 49 chr3 197003327 197003552 -30521026 - MIR SINE MIR -13 249 24 183 212 0 0 chr3 197004094 197004127 -30520451 - L2 LINE L2 -18 3254 3222 243 264 161 11 chr3 197004138 197004225 -30520353 - MIR SINE MIR -151 111 12 300 210 153 24 chr3 197004482 197004606 -30519972 - L1ME4a LINE L1 -21 6100 5961 213 395 32 26 chr3 197004771 197004961 -30519617 + MIR SINE MIR 33 223 -39 290 309 138 0 chr3 197004984 197005194 -30519384 - L1ME4a LINE L1 -338 5783 5545 1950 112 0 0 chr3 197006080 197006340 -30518238 - AluY SINE Alu -12 299 40 1535 95 0 9 chr3 197006836 197007046 -30517532 - AluSg/x SINE Alu 0 310 103 198 330 148 0 chr3 197008712 197008800 -30515778 + L2 LINE L2 3194 3294 -19 428 132 0 0 chr3 197010383 197010451 -30514127 + Charlie5 DNA MER1_type 38 105 -2507 1071 143 27 9 chr3 197010471 197010694 -30513884 + Charlie5 DNA MER1_type 2244 2470 -142 387 289 5 107 chr3 197011811 197012008 -30512570 + MER5B DNA MER1_type 2 178 0 204 231 16 8 chr3 197013314 197013435 -30511143 + GA-rich Low_complexity Low_complexity 1 122 0 349 264 108 81 chr3 197014294 197014552 -30510026 - L1M2a LINE L1 -6241 927 663 242 260 27 0 chr3 197014561 197014634 -30509944 + GA-rich Low_complexity Low_complexity 2 76 0 205 274 82 0 chr3 197015155 197015228 -30509350 - MIR SINE MIR -87 121 43 203 286 14 14 chr3 197015516 197015586 -30508992 + MIR SINE MIR 66 135 -127 603 40 0 0 chr3 197016332 197016468 -30508110 - AluSg SINE Alu 0 338 203 1501 109 0 19 chr3 197016509 197016720 -30507858 - AluSg SINE Alu -103 207 1 244 335 127 30 chr3 197017220 197017456 -30507122 - L2 LINE L2 -51 3262 3004 995 292 25 22 chr3 197017564 197017971 -30506607 - L1MC4 LINE L1 -974 7068 6661 369 258 123 32 chr3 197017973 197018128 -30506450 - L1MC4 LINE L1 -1996 5812 5644 200 238 0 0 chr3 197018133 197018175 -30506403 + (TA)n Simple_repeat Simple_repeat 1 42 0 823 184 60 18 chr3 197018286 197018503 -30506075 + L1MC4 LINE L1 7422 7647 -395 447 201 164 37 chr3 197018555 197018638 -30505940 + L1MC4 LINE L1 7800 7871 -171 333 0 0 0 chr3 197018638 197018675 -30505903 + (TG)n Simple_repeat Simple_repeat 2 38 0 447 201 164 37 chr3 197018675 197018805 -30505773 + L1MC4 LINE L1 7871 8040 -2 598 239 190 118 chr3 197018920 197019378 -30505200 - L1MC4a LINE L1 -1372 6436 5906 270 0 0 0 chr3 197019378 197019408 -30505170 + (TG)n Simple_repeat Simple_repeat 1 30 0 598 239 190 118 chr3 197019408 197019669 -30504909 - L1MC4a LINE L1 -1902 5906 5665 27 0 0 0 chr3 197019682 197019709 -30504869 + AT_rich Low_complexity Low_complexity 1 27 0 1416 245 25 34 chr3 197019857 197020618 -30503960 - L1MC4a LINE L1 -749 5397 4888 387 269 85 88 chr3 197020804 197021087 -30503491 - MLT1J LTR MaLR 0 511 230 26 30 0 0 chr3 197021346 197021379 -30503199 + AT_rich Low_complexity Low_complexity 1 33 0 1750 176 0 10 chr3 197021706 197021995 -30502583 - AluJo SINE Alu -24 288 3 1260 282 117 35 chr3 197022406 197022487 -30502091 - HAL1 LINE L1 -220 2287 2214 336 48 0 0 chr3 197022487 197022529 -30502049 + (CA)n Simple_repeat Simple_repeat 2 43 0 1260 282 117 35 chr3 197022529 197023091 -30501487 - HAL1 LINE L1 -293 2214 1566 1567 183 29 66 chr3 197023091 197023411 -30501167 - MLT1A1 LTR MaLR -2 363 58 2324 82 3 0 chr3 197023411 197023703 -30500875 + AluY SINE Alu 1 293 -18 1567 183 29 66 chr3 197023703 197023759 -30500819 - MLT1A1 LTR MaLR -307 58 1 1260 282 117 35 chr3 197023759 197023902 -30500676 - HAL1 LINE L1 -941 1566 1436 849 280 154 34 chr3 197023904 197024254 -30500324 - L2 LINE L2 0 3313 2922 1441 260 72 63 chr3 197024254 197024893 -30499685 + MLT2F LTR ERVL 1 645 -18 5307 273 86 20 chr3 197024901 197026753 -30497825 - L2 LINE L2 -387 2927 954 229 228 140 0 chr3 197026753 197026889 -30497689 - HAL1 LINE L1 -1068 1439 1285 242 208 25 92 chr3 197026897 197027017 -30497561 - HAL1 LINE L1 -1487 1020 909 990 330 123 60 chr3 197027199 197028180 -30496398 + L2 LINE L2 945 2053 -1261 2249 95 0 20 chr3 197028180 197028486 -30496092 - AluY SINE Alu -11 300 1 990 330 123 60 chr3 197028486 197028982 -30495596 + L2 LINE L2 2053 2516 -798 430 301 126 53 chr3 197028982 197029397 -30495181 + L2 LINE L2 2628 3079 -193 228 261 11 68 chr3 197029455 197029543 -30495035 + L2 LINE L2 3223 3305 -8 3254 155 10 13 chr3 197029718 197030318 -30494260 - L1MB3 LINE L1 -303 5880 5283 25 0 0 0 chr3 197030917 197030942 -30493636 + AT_rich Low_complexity Low_complexity 1 25 0 1788 152 42 64 chr3 197031704 197032262 -30492316 - MLT2A2 LTR ERVL -1 553 3 2809 34 3 0 chr3 197032262 197032613 -30491965 - L1PA4 LINE L1 -111 6044 5693 1041 39 0 0 chr3 197032613 197032735 -30491843 + L1PA4 LINE L1 6026 6155 0 207 0 0 0 chr3 197032755 197032778 -30491800 + (TAA)n Simple_repeat Simple_repeat 2 24 0 390 331 107 0 chr3 197033027 197033205 -30491373 + L2 LINE L2 2545 2741 -573 307 233 0 0 chr3 197033209 197033269 -30491309 - MER58A DNA MER1_type -18 89 30 293 264 77 0 chr3 197033397 197033488 -30491090 + MLT1L LTR MaLR 170 267 -348 246 285 229 11 chr3 197033574 197033753 -30490825 + MLT1L LTR MaLR 394 611 -4 2430 69 0 3 chr3 197033997 197034303 -30490275 - AluY SINE Alu -6 305 1 764 280 9 30 chr3 197034358 197034590 -30489988 + MLT1L LTR MaLR 3 229 -386 428 282 103 0 chr3 197034650 197034806 -30489772 + MLT1L LTR MaLR 355 526 -89 1325 59 0 0 chr3 197034943 197035113 -30489465 + AluY SINE Alu 138 307 -4 1990 113 65 10 chr3 197035577 197035868 -30488710 + AluSx SINE Alu 1 307 -5 1047 95 0 0 chr3 197035881 197036029 -30488549 + L1PA8 LINE L1 6025 6172 0 21 57 0 0 chr3 197037401 197037436 -30487142 + AT_rich Low_complexity Low_complexity 1 35 0 1363 208 48 41 chr3 197037710 197038003 -30486575 + AluJb SINE Alu 1 295 -17 389 273 50 11 chr3 197038030 197038315 -30486263 + L1M4c LINE L1 2290 2588 -3794 264 307 42 6 chr3 197038422 197038588 -30485990 + L1M4c LINE L1 2915 3086 -3296 2315 97 0 10 chr3 197038642 197038950 -30485628 - AluSg SINE Alu 0 310 6 321 313 54 12 chr3 197038955 197039121 -30485457 + L1M4c LINE L1 3120 3292 -3090 1594 159 3 79 chr3 197039126 197039441 -30485137 + AluSx SINE Alu 5 295 -17 32 43 0 0 chr3 197039759 197039805 -30484773 + AT_rich Low_complexity Low_complexity 1 46 0 248 191 0 0 chr3 197039973 197040015 -30484563 + MER20B DNA MER1_type 115 156 -627 537 141 0 12 chr3 197040017 197040102 -30484476 + AluS SINE Alu 1 84 -228 1278 96 0 21 chr3 197040494 197040681 -30483897 - L1PB1 LINE L1 -2 6149 5967 372 309 140 0 chr3 197041158 197041336 -30483242 - MIR SINE MIR -59 203 1 203 156 0 0 chr3 197041337 197041369 -30483209 + T-rich Low_complexity Low_complexity 1 32 0 1782 102 0 0 chr3 197041369 197041623 -30482955 - L1PA13 LINE L1 -2 6161 5908 2040 113 43 0 chr3 197042006 197042288 -30482290 - AluSq SINE Alu -19 294 1 842 48 0 0 chr3 197043032 197043135 -30481443 - AluY SINE Alu -2 309 207 428 237 67 15 chr3 197043157 197043292 -30481286 - MIR SINE MIR -16 246 105 310 273 127 24 chr3 197044114 197044263 -30480315 - MER5A DNA MER1_type -15 173 1 311 301 44 37 chr3 197044319 197044455 -30480123 + L1ME LINE L1 5423 5559 -2249 728 172 8 8 chr3 197044489 197044623 -30479955 - AluJb SINE Alu -178 134 1 229 228 18 0 chr3 197044701 197044758 -30479820 + L1ME LINE L1 5689 5746 -375 217 239 0 0 chr3 197044887 197044933 -30479645 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 1631 128 0 4 chr3 197045056 197045283 -30479295 - AluSx SINE Alu -86 226 1 2504 155 19 26 chr3 197045610 197046074 -30478504 + LOR1b LTR ERV1 1 461 0 5147 187 28 55 chr3 197046146 197047521 -30477057 - L1MA4 LINE L1 -1 6299 4888 654 159 23 45 chr3 197047521 197047653 -30476925 - FLAM_A SINE Alu -2 140 12 5147 187 28 55 chr3 197047653 197047921 -30476657 - L1MA4 LINE L1 -1412 4888 4614 2022 132 0 3 chr3 197047921 197048208 -30476370 - AluSx SINE Alu -26 286 1 5147 187 28 55 chr3 197048208 197048892 -30475686 - L1MA4 LINE L1 -1686 4614 3957 233 323 0 11 chr3 197048993 197049086 -30475492 + (TATATG)n Simple_repeat Simple_repeat 5 96 0 21 36 0 0 chr3 197049089 197049117 -30475461 + AT_rich Low_complexity Low_complexity 1 28 0 483 266 48 83 chr3 197049167 197049329 -30475249 - L1ME3A LINE L1 -294 5876 5710 2355 91 0 0 chr3 197049329 197049627 -30474951 + AluSc SINE Alu 1 298 -11 554 230 156 15 chr3 197049627 197049762 -30474816 - FAM SINE Alu -18 157 4 483 266 48 83 chr3 197049762 197049996 -30474582 - L1ME3A LINE L1 -458 5712 5493 3015 275 85 9 chr3 197050027 197051337 -30473241 - L2 LINE L2 0 3313 1893 256 228 50 20 chr3 197051343 197051444 -30473134 - L1ME3A LINE L1 -895 5251 5148 6890 222 47 52 chr3 197051481 197051934 -30472644 - L1ME3A LINE L1 -1257 4889 4435 207 0 0 0 chr3 197051934 197051957 -30472621 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2137 112 0 0 chr3 197051960 197052237 -30472341 - AluSg SINE Alu -33 277 1 6890 222 47 52 chr3 197052237 197053548 -30471030 - L1ME3A LINE L1 -1713 4433 3029 800 106 0 0 chr3 197053548 197053652 -30470926 + AluSx SINE Alu 53 156 -156 6890 222 47 52 chr3 197053652 197054142 -30470436 - L1ME3A LINE L1 -3117 3029 2538 214 292 0 15 chr3 197054334 197054399 -30470179 + GA-rich Low_complexity Low_complexity 2 65 0 213 154 0 0 chr3 197054862 197054901 -30469677 + CT-rich Low_complexity Low_complexity 3 41 0 594 316 62 0 chr3 197054933 197055189 -30469389 - ERVL LTR ERVL -1007 4757 4486 4636 138 16 6 chr3 197055320 197056117 -30468461 + L1MA7 LINE L1 5485 6289 -2 930 240 0 0 chr3 197056134 197056309 -30468269 + MER5A DNA MER1_type 12 186 -3 368 280 50 0 chr3 197056317 197056417 -30468161 + ERVL LTR ERVL 4896 5000 -764 306 125 0 0 chr3 197056431 197056479 -30468099 + (TC)n Simple_repeat Simple_repeat 1 48 0 2753 76 0 0 chr3 197056479 197056836 -30467742 - L1PA8 LINE L1 -1 6171 5815 21 0 0 0 chr3 197056837 197056858 -30467720 + AT_rich Low_complexity Low_complexity 1 21 0 3050 45 3 0 chr3 197056858 197057232 -30467346 - L1PA4 LINE L1 -11 6144 5770 17948 44 1 7 chr3 197057261 197060286 -30464292 - L1PA4 LINE L1 -4 6151 3141 5542 90 9 0 chr3 197060290 197061101 -30463477 - L1P LINE L1 -1783 4678 3861 * 10307 141 16 23 chr3 197061100 197063378 -30461200 - L1P3 LINE L1 -4178 2283 10 235 0 0 0 chr3 197064106 197064132 -30460446 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 2231 87 0 0 chr3 197064132 197064408 -30460170 - AluY SINE Alu -1 307 7 2140 107 4 0 chr3 197064556 197064836 -30459742 + AluSp SINE Alu 1 281 -32 360 0 0 0 chr3 197064842 197064882 -30459696 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 1314 162 0 2 chr3 197065174 197065435 -30459143 - AluJb SINE Alu -1 311 4 1952 111 3 100 chr3 197065443 197065822 -30458756 - L1MA2 LINE L1 0 6304 5963 971 179 6 0 chr3 197065824 197066003 -30458575 + L1 LINE L1 5067 5246 -900 362 311 38 61 chr3 197066256 197066520 -30458058 + L1M4 LINE L1 3611 3868 -2278 * 1334 72 6 0 chr3 197066476 197066662 -30457916 - L1M3 LINE L1 -384 5771 5614 * 3381 31 9 5 chr3 197066555 197067083 -30457495 + L1PA3 LINE L1 5657 6188 0 544 214 75 23 chr3 197067083 197067256 -30457322 + L1M4 LINE L1 3841 4022 -2124 * 1684 184 27 6 chr3 197067240 197067572 -30457006 + L1MC3 LINE L1 7413 7751 -34 2070 211 37 39 chr3 197067583 197068342 -30456236 - L1M4 LINE L1 -3757 2625 1772 1920 157 3 0 chr3 197068398 197068691 -30455887 - AluJb SINE Alu -18 294 1 701 281 95 9 chr3 197068711 197068932 -30455646 - MIR SINE MIR -22 240 1 396 284 66 81 chr3 197069046 197069183 -30455395 + L1M4 LINE L1 4483 4621 -1525 207 69 0 0 chr3 197069183 197069212 -30455366 + (TG)n Simple_repeat Simple_repeat 2 30 0 396 284 66 81 chr3 197069212 197069373 -30455205 + L1M4 LINE L1 4621 4783 -1363 2188 172 52 2 chr3 197069373 197069779 -30454799 + L1MB3 LINE L1 5751 6176 -7 396 284 66 81 chr3 197069779 197069967 -30454611 + L1M4 LINE L1 4783 4960 -1186 2100 120 3 10 chr3 197069967 197070258 -30454320 + AluSg1 SINE Alu 1 289 -20 396 284 66 81 chr3 197070258 197070409 -30454169 + L1M4 LINE L1 4960 5112 -1034 1674 209 29 82 chr3 197070412 197070704 -30453874 - MLT1C LTR MaLR -5 462 156 2475 60 7 3 chr3 197070704 197071006 -30453572 - AluY SINE Alu -8 303 1 1674 209 29 82 chr3 197071006 197071038 -30453540 - MLT1C LTR MaLR -311 156 124 2354 87 7 3 chr3 197071038 197071337 -30453241 + AluSx SINE Alu 1 300 -12 1674 209 29 82 chr3 197071337 197071499 -30453079 - MLT1C LTR MaLR -343 124 1 2126 141 0 0 chr3 197071755 197072053 -30452525 - AluSc SINE Alu -10 299 2 318 325 33 25 chr3 197073965 197074085 -30450493 - MIR SINE MIR -118 144 24 1286 115 0 6 chr3 197074091 197074351 -30450227 + AluSp SINE Alu 2 309 -4 400 208 0 0 chr3 197074425 197074502 -30450076 - MER116 DNA Mariner -3 77 1 2393 93 3 0 chr3 197074637 197074948 -30449630 + AluSp SINE Alu 1 312 -1 1845 84 8 4 chr3 197075792 197076030 -30448548 + AluY SINE Alu 67 305 -6 1439 165 9 0 chr3 197076245 197076469 -30448109 + AluJb SINE Alu 42 267 -45 203 255 20 0 chr3 197078047 197078098 -30446480 + (TG)n Simple_repeat Simple_repeat 1 52 0 264 219 0 27 chr3 197078682 197078755 -30445823 + CT-rich Low_complexity Low_complexity 2 72 0 422 287 100 61 chr3 197078837 197079067 -30445511 + MIR SINE MIR 13 251 -11 2297 118 0 0 chr3 197079864 197080168 -30444410 - AluSx SINE Alu -8 304 1 224 219 31 16 chr3 197080385 197080449 -30444129 + CT-rich Low_complexity Low_complexity 4 68 0 235 266 32 43 chr3 197080550 197080644 -30443934 + MIR3 SINE MIR 69 161 -47 437 271 45 68 chr3 197080657 197080834 -30443744 + MIR3 SINE MIR 15 187 -21 187 288 81 31 chr3 197081256 197081416 -30443162 + MIR3 SINE MIR 36 203 -5 183 42 0 0 chr3 197081789 197081813 -30442765 + (CA)n Simple_repeat Simple_repeat 2 25 0 186 43 0 0 chr3 197081903 197081926 -30442652 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2453 74 0 7 chr3 197082010 197082309 -30442269 + AluY SINE Alu 1 297 -14 495 208 100 1 chr3 197083779 197083920 -30440658 - L1ME4a LINE L1 -2 6091 1188 668 254 79 11 chr3 197085010 197085199 -30439379 + MIR SINE MIR 45 246 -16 184 276 115 70 chr3 197085984 197086140 -30438438 + MIR3 SINE MIR 37 199 -9 7493 46 20 14 chr3 197086834 197088248 -30436330 + L1PA8 LINE L1 4749 6171 -1 180 216 78 0 chr3 197090211 197090262 -30434316 - MIR SINE MIR -107 155 101 609 50 0 50 chr3 197090353 197090454 -30434124 + (TTTC)n Simple_repeat Simple_repeat 1 96 0 1995 121 7 34 chr3 197090459 197090756 -30433822 - AluSx SINE Alu -15 297 9 315 308 19 19 chr3 197090778 197090882 -30433696 + MER5A DNA MER1_type 82 185 -4 2389 87 0 0 chr3 197091480 197091779 -30432799 + AluY SINE Alu 1 299 -12 2262 110 0 25 chr3 197092013 197092332 -30432246 - AluSx SINE Alu -1 311 1 2192 107 0 13 chr3 197092351 197092651 -30431927 - AluSx SINE Alu -16 296 1 2167 121 0 0 chr3 197092904 197093209 -30431369 - AluY SINE Alu -6 305 1 256 290 183 30 chr3 197093224 197093355 -30431223 + L2 LINE L2 3161 3311 -2 899 156 23 17 chr3 197093906 197094079 -30430499 + AluSg/x SINE Alu 139 312 0 2236 104 3 10 chr3 197094143 197094442 -30430136 - AluSx SINE Alu -15 297 1 320 342 62 35 chr3 197094468 197094654 -30429924 - MIR3 SINE MIR -1 207 17 2321 108 0 0 chr3 197094944 197095241 -30429337 - AluSx SINE Alu -14 298 2 707 112 0 0 chr3 197095290 197095388 -30429190 + AluSg/x SINE Alu 211 308 -2 382 298 115 39 chr3 197095489 197095801 -30428777 + MLT1H LTR MaLR 29 364 -185 325 287 54 95 chr3 197095946 197096263 -30428315 - LTR67 LTR ERVL -4 553 250 257 295 0 98 chr3 197096276 197096388 -30428190 - LTR67 LTR ERVL -190 367 267 583 269 35 128 chr3 197096417 197096822 -30427756 - LTR67 LTR ERVL -190 367 1 1243 210 95 42 chr3 197096938 197097267 -30427311 - L1ME3 LINE L1 -135 6027 5717 2098 126 0 13 chr3 197097267 197097568 -30427010 + AluSx SINE Alu 1 297 -15 2362 71 0 39 chr3 197097573 197097884 -30426694 + AluY SINE Alu 1 299 -12 1243 210 95 42 chr3 197097884 197097990 -30426588 - L1ME3 LINE L1 -448 5714 5480 1845 113 0 0 chr3 197098009 197098249 -30426329 - AluSq SINE Alu -73 240 1 425 147 101 7 chr3 197098838 197098964 -30425614 - L1ME3 LINE L1 -699 5475 5329 708 186 48 37 chr3 197099000 197099198 -30425380 - MER6 DNA MER2_type 0 865 -65 1844 108 17 0 chr3 197099205 197099500 -30425078 - L1P LINE L1 -3549 2597 2298 * 3849 201 46 6 chr3 197099498 197100213 -30424365 - L1PA13 LINE L1 -5842 945 202 408 263 66 37 chr3 197100218 197100392 -30424186 - Tigger5 DNA MER2_type -176 2147 4 592 296 40 35 chr3 197100454 197100976 -30423602 - L1ME LINE L1 -5069 1001 527 688 269 3 90 chr3 197101101 197101402 -30423176 - L1ME LINE L1 -5539 531 257 480 60 75 0 chr3 197101435 197101502 -30423076 - L1PA11 LINE L1 -2 6172 6101 581 315 22 26 chr3 197101502 197101775 -30422803 - L1ME LINE L1 -5796 274 3 2616 44 3 0 chr3 197101791 197102088 -30422490 - AluY SINE Alu -13 298 1 1651 135 138 13 chr3 197102170 197102474 -30422104 + MSTA LTR MaLR 87 428 0 275 301 12 0 chr3 197102496 197102579 -30421999 + MIR SINE MIR 73 156 -106 5272 77 30 26 chr3 197103909 197104597 -30419981 + LTR8 LTR ERV1 1 691 0 205 211 0 0 chr3 197104971 197105009 -30419569 + T-rich Low_complexity Low_complexity 1 38 0 469 297 96 48 chr3 197105507 197105662 -30418916 + MIR SINE MIR 4 175 -87 2247 112 0 3 chr3 197105662 197105958 -30418620 + AluSg SINE Alu 1 295 -15 469 297 96 48 chr3 197105958 197106031 -30418547 + MIR SINE MIR 175 243 -19 978 159 103 52 chr3 197106053 197106305 -30418273 - ORSL DNA AcHobo -1 274 10 2360 107 0 0 chr3 197107106 197107415 -30417163 - AluSq SINE Alu -4 309 1 2178 136 0 0 chr3 197107443 197107752 -30416826 + AluSx SINE Alu 1 309 -3 457 277 151 15 chr3 197108358 197108564 -30416014 - MIR SINE MIR -3 259 26 443 235 31 107 chr3 197108568 197108691 -30415887 + MER5A DNA MER1_type 9 114 -75 2132 94 0 4 chr3 197108691 197109003 -30415575 - AluSx SINE Alu 0 319 9 443 235 31 107 chr3 197109003 197109074 -30415504 + MER5A DNA MER1_type 114 189 0 442 266 32 8 chr3 197109079 197109203 -30415375 + MIR SINE MIR 65 191 -71 959 262 145 57 chr3 197110129 197110659 -30413919 - L1ME3A LINE L1 -171 5991 5415 1169 120 46 0 chr3 197110844 197111019 -30413559 - AluSg/x SINE Alu -2 310 128 290 294 35 21 chr3 197111021 197111164 -30413414 - L1ME3A LINE L1 -867 5279 5135 2455 62 0 0 chr3 197111165 197111503 -30413075 + AluY SINE Alu 1 311 0 1852 141 24 10 chr3 197111840 197112150 -30412428 - AluSq SINE Alu 0 313 1 186 308 68 60 chr3 197112282 197112415 -30412163 + MIR3 SINE MIR 63 196 -12 1588 208 24 61 chr3 197112421 197112800 -30411778 - MLT1A1 LTR MaLR 0 365 1 2305 107 0 0 chr3 197113189 197113499 -30411079 - AluSx SINE Alu -2 310 1 366 340 0 10 chr3 197113583 197113683 -30410895 - MIR SINE MIR -90 118 20 2014 113 22 4 chr3 197113764 197114077 -30410501 - AluSc SINE Alu 0 318 1 2393 158 23 10 chr3 197114301 197114686 -30409892 + MLT1B LTR MaLR 1 390 0 333 47 0 0 chr3 197115339 197115382 -30409196 + (TG)n Simple_repeat Simple_repeat 2 44 0 669 126 0 0 chr3 197115398 197115485 -30409093 + AluSg/x SINE Alu 206 292 -20 2338 97 7 0 chr3 197115546 197115855 -30408723 - AluSp SINE Alu -2 311 1 499 269 132 0 chr3 197115879 197116076 -30408502 - MIR SINE MIR -28 234 12 248 225 62 12 chr3 197116086 197116166 -30408412 + MER103 DNA DNA 74 157 -9 28 0 0 0 chr3 197116360 197116388 -30408190 + AT_rich Low_complexity Low_complexity 1 28 0 921 223 192 54 chr3 197116396 197116787 -30407791 - LTR16A1 LTR ERVL -9 448 4 213 178 0 0 chr3 197116971 197117016 -30407562 + CT-rich Low_complexity Low_complexity 1 45 0 2019 348 68 26 chr3 197117060 197118493 -30406085 - ERVL LTR ERVL -504 5260 3768 244 279 73 0 chr3 197118616 197118684 -30405894 + LTR67 LTR ERVL 3 75 -482 2792 144 22 2 chr3 197118993 197119409 -30405169 - MSTB LTR MaLR -2 424 1 289 311 13 46 chr3 197119413 197119564 -30405014 + LTR67 LTR ERVL 412 557 0 201 223 32 11 chr3 197120080 197120174 -30404404 + CT-rich Low_complexity Low_complexity 1 96 0 288 255 59 72 chr3 197120189 197120342 -30404236 - L1ME4a LINE L1 -12 6109 5959 213 128 64 0 chr3 197120392 197120439 -30404139 + (TA)n Simple_repeat Simple_repeat 2 51 0 332 287 28 9 chr3 197120677 197120785 -30403793 - L1ME4a LINE L1 -490 5631 5522 2077 113 11 0 chr3 197121212 197121517 -30403061 + AluSx SINE Alu 1 308 0 842 229 37 5 chr3 197121880 197122098 -30402480 + L1ME LINE L1 5540 5764 -357 251 256 26 0 chr3 197122099 197122177 -30402401 + MER116 DNA Mariner 1 80 0 2433 78 0 0 chr3 197122306 197122600 -30401978 - AluY SINE Alu -17 294 1 2262 112 0 0 chr3 197122858 197123153 -30401425 + AluSq SINE Alu 1 295 -18 983 261 35 0 chr3 197124150 197124376 -30400202 + MIR SINE MIR 23 256 -6 2232 118 3 3 chr3 197124613 197124917 -30399661 - AluSx SINE Alu -8 304 1 700 150 150 50 chr3 197125423 197125603 -30398975 + ORSL DNA AcHobo 1 198 -77 1819 80 52 8 chr3 197125606 197125855 -30398723 + AluSc SINE Alu 30 289 -20 2200 119 3 3 chr3 197125861 197126172 -30398406 - AluSx SINE Alu 0 312 2 358 191 36 12 chr3 197126250 197126334 -30398244 + L2 LINE L2 3226 3311 -2 378 219 97 32 chr3 197126444 197126599 -30397979 - L1ME4a LINE L1 -2 6119 5955 6239 136 78 67 chr3 197126642 197127463 -30397115 + Tigger3b DNA MER2_type 2 842 -2186 2163 105 0 7 chr3 197127463 197127757 -30396821 + AluSg SINE Alu 1 292 -18 6239 136 78 67 chr3 197127757 197128152 -30396426 + Tigger3b DNA MER2_type 842 1231 0 2056 106 36 0 chr3 197128365 197128668 -30395910 + AluSq SINE Alu 1 313 0 272 102 20 0 chr3 197128950 197128999 -30395579 + (GA)n Simple_repeat Simple_repeat 1 50 0 277 109 36 0 chr3 197130069 197130124 -30394454 + CT-rich Low_complexity Low_complexity 1 57 0 2411 218 105 8 chr3 197130572 197131192 -30393386 + L1MC4 LINE L1 7350 8029 -13 2098 98 45 3 chr3 197131197 197131483 -30393095 - AluSq SINE Alu -15 298 1 1134 119 13 0 chr3 197131554 197131713 -30392865 - AluSg SINE Alu -149 161 1 2176 96 0 0 chr3 197131766 197132078 -30392500 - AluY SINE Alu 0 312 1 21 0 0 0 chr3 197132078 197132099 -30392479 + AT_rich Low_complexity Low_complexity 1 21 0 3607 105 21 19 chr3 197132106 197132639 -30391939 - L1MA1 LINE L1 0 6302 5769 * 6722 87 25 9 chr3 197132633 197133146 -30391432 - L1PA12 LINE L1 0 6168 5665 2194 101 7 0 chr3 197133146 197133433 -30391145 - AluSp SINE Alu -24 289 1 6722 87 25 9 chr3 197133433 197134657 -30389921 - L1PA12 LINE L1 -503 5665 4431 10788 151 5 14 chr3 197134662 197135766 -30388812 - L1MA1 LINE L1 -529 5775 4662 2108 173 126 5 chr3 197135766 197136148 -30388430 + MSTA LTR MaLR 1 428 0 10788 151 5 14 chr3 197136148 197136582 -30387996 - L1MA1 LINE L1 -1642 4662 4225 2268 67 3 17 chr3 197136582 197136880 -30387698 - AluY SINE Alu -17 294 1 10788 151 5 14 chr3 197136880 197137657 -30386921 - L1MA1 LINE L1 -2079 4225 3484 322 223 26 46 chr3 197137694 197137781 -30386797 - L1MC4 LINE L1 -985 6800 6726 826 187 6 41 chr3 197138657 197138828 -30385750 + AluJo SINE Alu 123 287 -25 195 69 0 0 chr3 197138836 197138865 -30385713 + (TAAA)n Simple_repeat Simple_repeat 2 30 0 245 89 22 0 chr3 197139368 197139413 -30385165 + (CA)n Simple_repeat Simple_repeat 2 47 0 195 170 0 0 chr3 197141022 197141069 -30383509 + T-rich Low_complexity Low_complexity 1 47 0 918 110 0 0 chr3 197141070 197141197 -30383381 - L1MA2 LINE L1 0 6304 6178 5677 98 18 8 chr3 197141235 197141994 -30382584 - L1PA11 LINE L1 0 6174 5408 2086 72 0 0 chr3 197142003 197142254 -30382324 - AluY SINE Alu -17 294 44 1060 85 52 0 chr3 197142255 197142408 -30382170 + L1PA11 LINE L1 5925 6085 -89 302 89 0 22 chr3 197142408 197142453 -30382125 - AluY SINE Alu -257 44 1 3345 170 108 46 chr3 197143068 197143244 -30381334 - L1M4c LINE L1 -5388 996 832 2239 155 19 27 chr3 197143244 197143611 -30380967 + THE1B LTR MaLR 1 364 0 3345 170 108 46 chr3 197143611 197144212 -30380366 - L1M4c LINE L1 -5552 832 171 1943 134 58 71 chr3 197144216 197144596 -30379982 + THE1C LTR MaLR 1 375 0 9918 115 70 11 chr3 197144596 197146088 -30378490 + THE1C-int LTR MaLR 1 1580 0 1920 120 70 91 chr3 197146088 197146471 -30378107 + THE1C LTR MaLR 1 375 0 797 157 36 0 chr3 197146475 197146615 -30377963 - L1M4c LINE L1 -6217 167 23 408 162 0 0 chr3 197146628 197146696 -30377882 - MLT1A1 LTR MaLR -2 363 296 554 214 36 0 chr3 197147483 197147595 -30376983 - L1MC1 LINE L1 -242 6091 5976 824 276 9 86 chr3 197147732 197148047 -30376531 + MLT1K LTR MaLR 265 555 -33 4622 148 32 3 chr3 197148240 197148979 -30375599 - L1MC1 LINE L1 0 6333 5573 1899 173 16 52 chr3 197148980 197149345 -30375233 - MLT1A1 LTR MaLR -2 363 12 1642 193 59 0 chr3 197149348 197149705 -30374873 - L1MC1 LINE L1 -743 5403 5209 920 83 0 0 chr3 197150409 197150529 -30374049 + AluY SINE Alu 191 310 -1 765 306 174 33 chr3 197151140 197151505 -30373073 + MLT1K LTR MaLR 2 454 -134 1834 144 41 14 chr3 197151505 197151796 -30372782 - AluSx SINE Alu -13 299 1 765 306 174 33 chr3 197151796 197151917 -30372661 + MLT1K LTR MaLR 454 557 -31 2277 106 0 10 chr3 197153429 197153741 -30370837 - AluSx SINE Alu -3 309 1 1478 143 4 31 chr3 197153792 197154050 -30370528 - L1PA12 LINE L1 -2018 5566 5316 * 7308 196 14 16 chr3 197154039 197154988 -30369590 - L1PA12 LINE L1 -3019 4565 3616 2199 95 0 3 chr3 197154988 197155313 -30369265 - AluY SINE Alu 0 324 1 2201 118 0 3 chr3 197155319 197155616 -30368962 - AluSq SINE Alu -17 296 1 7308 196 14 16 chr3 197155616 197155893 -30368685 - L1PA12 LINE L1 -3973 3611 3335 1695 157 98 45 chr3 197155893 197156249 -30368329 + THE1C LTR MaLR 1 375 0 7308 196 14 16 chr3 197156249 197157274 -30367304 - L1PA12 LINE L1 -4249 3335 2304 424 190 0 0 chr3 197157297 197157397 -30367181 - L1P LINE L1 -3019 3127 3028 313 102 0 0 chr3 197157392 197157441 -30367137 - L1PA12 LINE L1 -5278 2303 2255 * 334 218 26 0 chr3 197157445 197157523 -30367055 - L2 LINE L2 -2738 576 497 7799 231 57 36 chr3 197157538 197159726 -30364852 - L1PA12 LINE L1 -5328 2253 19 2453 96 3 0 chr3 197160068 197160380 -30364198 - AluSq SINE Alu 0 313 1 2319 107 0 0 chr3 197161026 197161325 -30363253 - AluSq SINE Alu -14 299 1 284 328 16 56 chr3 197162610 197162735 -30361843 + MIR SINE MIR 17 136 -72 24 32 0 0 chr3 197163234 197163265 -30361313 + AT_rich Low_complexity Low_complexity 1 31 0 2460 81 0 0 chr3 197163975 197164273 -30360305 + AluY SINE Alu 1 298 -13 24 32 0 0 chr3 197164698 197164729 -30359849 + AT_rich Low_complexity Low_complexity 1 31 0 3502 120 0 26 chr3 197164729 197165263 -30359315 + L1PA12 LINE L1 5434 5953 -215 1993 122 45 3 chr3 197165537 197165824 -30358754 - AluSq SINE Alu -14 299 1 1969 148 6 25 chr3 197166709 197167027 -30357551 - AluJo SINE Alu 0 312 1 465 200 350 0 chr3 197168093 197168233 -30356345 + MER5A DNA MER1_type 1 189 0 2306 107 0 3 chr3 197168581 197168890 -30355688 - AluSq SINE Alu -5 308 1 309 51 0 0 chr3 197169287 197169326 -30355252 + (TG)n Simple_repeat Simple_repeat 1 39 0 260 248 234 0 chr3 197170207 197170344 -30354234 + L1ME4a LINE L1 5953 6121 0 244 363 89 6 chr3 197170589 197170746 -30353832 + MIR SINE MIR 2 171 -91 317 258 110 7 chr3 197170958 197171111 -30353467 - MIR SINE MIR -64 144 25 2232 100 0 7 chr3 197171789 197172079 -30352499 + AluSg SINE Alu 1 288 -22 987 223 64 43 chr3 197172635 197172917 -30351661 + L1MA9 LINE L1 5987 6274 -38 44 46 0 0 chr3 197172919 197172984 -30351594 + AT_rich Low_complexity Low_complexity 1 65 0 2384 85 6 22 chr3 197172992 197173310 -30351268 + AluSq SINE Alu 1 313 0 265 309 0 91 chr3 197173631 197173708 -30350870 + MIR SINE MIR 14 80 -182 2290 193 66 53 chr3 197173708 197174221 -30350357 + MLT2B1 LTR ERVL 1 520 0 265 309 0 91 chr3 197174221 197174253 -30350325 + MIR SINE MIR 80 113 -149 281 248 196 8 chr3 197175329 197175478 -30349100 + MIR SINE MIR 38 214 -48 7257 156 21 16 chr3 197175479 197175771 -30348807 + L1MCa LINE L1 18 307 -6119 2704 116 8 3 chr3 197175771 197176133 -30348445 + THE1B LTR MaLR 1 364 0 7257 156 21 16 chr3 197176133 197177097 -30347481 + L1MCa LINE L1 307 1281 -5145 738 231 13 5 chr3 197177090 197177283 -30347295 + L1MCa LINE L1 2473 2667 -3759 * 510 179 8 43 chr3 197177305 197177353 -30347225 - L1M4 LINE L1 -2403 3743 3695 2783 16 0 0 chr3 197177353 197177656 -30346922 - AluY SINE Alu -8 303 1 510 179 8 43 chr3 197177656 197177724 -30346854 - L1M4 LINE L1 -2451 3695 3631 579 84 0 0 chr3 197177728 197177799 -30346779 + AluSp/q SINE Alu 208 278 -35 324 0 0 0 chr3 197177803 197177839 -30346739 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 438 286 0 0 chr3 197177840 197177945 -30346633 + L1MCa LINE L1 4029 4133 -2293 1517 127 0 9 chr3 197177946 197178078 -30346500 + AluSg SINE Alu 1 132 -178 192 40 0 0 chr3 197178078 197178103 -30346475 + (CA)n Simple_repeat Simple_repeat 2 26 0 1517 127 0 9 chr3 197178103 197178183 -30346395 + AluSg SINE Alu 132 211 -99 4659 135 16 19 chr3 197178202 197178426 -30346152 - HSMAR2 DNA Mariner -1 1301 1078 2527 67 0 16 chr3 197178426 197178742 -30345836 - AluY SINE Alu 0 311 1 4659 135 16 19 chr3 197178742 197179250 -30345328 - HSMAR2 DNA Mariner -224 1078 571 6924 174 95 76 chr3 197179257 197180905 -30343673 - MER52A LTR ERV1 -19 1736 58 3656 134 11 7 chr3 197181514 197182074 -30342504 - HSMAR2 DNA Mariner -739 563 2 3858 142 9 20 chr3 197182075 197182509 -30342069 - Ricksha DNA DNA -916 2330 1904 2386 88 0 0 chr3 197182509 197182814 -30341764 - AluY SINE Alu -6 305 1 3858 142 9 20 chr3 197182814 197183012 -30341566 - Ricksha DNA DNA -1342 1904 1705 345 161 92 35 chr3 197182991 197183078 -30341500 - Ricksha DNA DNA -1154 100 9 * 464 309 79 17 chr3 197183158 197183314 -30341264 + LTR33 LTR ERVL 4 149 -372 2594 121 47 33 chr3 197183314 197183537 -30341041 - MSTA LTR MaLR 0 428 195 2270 114 0 0 chr3 197183537 197183834 -30340744 - AluSx SINE Alu -15 297 1 2594 121 47 33 chr3 197183834 197184032 -30340546 - MSTA LTR MaLR -233 195 1 464 309 79 17 chr3 197184032 197184325 -30340253 + LTR33 LTR ERVL 149 520 -1 1834 155 7 23 chr3 197184393 197184703 -30339875 + AluSx SINE Alu 1 305 -7 357 271 33 60 chr3 197184864 197185015 -30339563 - MER5A DNA MER1_type 0 189 43 * 721 156 15 52 chr3 197184881 197185016 -30339562 + MER5A DNA MER1_type 30 159 -30 404 252 45 9 chr3 197185128 197185239 -30339339 + MER5A DNA MER1_type 1 115 -74 2157 140 41 41 chr3 197185265 197185629 -30338949 + THE1B LTR MaLR 1 364 0 545 189 146 16 chr3 197186131 197186292 -30338286 + MER5A DNA MER1_type 4 188 -1 1282 180 14 0 chr3 197186293 197186534 -30338044 + AluJb SINE Alu 87 312 0 776 242 25 0 chr3 197186948 197187109 -30337469 + FAM SINE Alu 1 165 -10 2053 129 3 0 chr3 197187261 197187548 -30337030 - AluSp SINE Alu -25 288 1 2098 125 34 57 chr3 197188132 197188516 -30336062 + THE1C LTR MaLR 1 375 0 231 336 103 9 chr3 197188617 197188733 -30335845 - MIR3 SINE MIR -67 141 15 309 51 0 0 chr3 197189316 197189355 -30335223 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 569 252 123 43 chr3 197189670 197189972 -30334606 - L2 LINE L2 -9 3263 2938 572 111 26 120 chr3 197190065 197190182 -30334396 - Charlie1b DNA MER1_type 0 523 418 2660 39 0 0 chr3 197190182 197190488 -30334090 - AluY SINE Alu -5 306 1 825 180 43 12 chr3 197190519 197190680 -30333898 + AluJb SINE Alu 139 304 -8 1391 170 154 48 chr3 197190702 197190848 -30333730 - Charlie1b DNA MER1_type -2351 410 281 2547 62 3 0 chr3 197190848 197191152 -30333426 - AluSx SINE Alu -5 307 3 1391 170 154 48 chr3 197191152 197191376 -30333202 - Charlie1b DNA MER1_type -2480 281 1 259 383 52 30 chr3 197191458 197191917 -30332661 - L2 LINE L2 -571 2743 2275 1665 260 154 11 chr3 197191932 197192497 -30332081 + MER69 DNA AcHobo 6 651 -1875 2338 110 0 0 chr3 197192521 197192822 -30331756 + AluSg SINE Alu 1 301 -9 738 312 144 18 chr3 197192839 197193297 -30331281 + MLT1G1 LTR MaLR 79 594 -1 306 345 64 15 chr3 197193452 197193655 -30330923 - L2 LINE L2 -1575 1739 1527 2500 74 0 7 chr3 197193895 197194205 -30330373 + AluY SINE Alu 1 308 -3 2570 27 7 3 chr3 197194247 197194544 -30330034 + AluY SINE Alu 1 298 -13 950 154 0 0 chr3 197194569 197194699 -30329879 + FLAM_C SINE Alu 1 130 -3 2034 117 7 0 chr3 197195052 197195326 -30329252 + AluSx SINE Alu 1 276 -36 393 165 87 48 chr3 197195326 197195420 -30329158 - U3 snRNA snRNA -6 211 111 491 290 76 59 chr3 197195426 197195781 -30328797 - L2 LINE L2 -20 3293 2933 426 226 28 19 chr3 197197527 197197633 -30326945 - MIR3 SINE MIR -28 180 74 21 36 0 0 chr3 197200234 197200262 -30324316 + AT_rich Low_complexity Low_complexity 1 28 0 411 270 153 33 chr3 197200948 197201159 -30323419 - MIR SINE MIR -21 241 10 26 0 0 0 chr3 197202231 197202257 -30322321 + AT_rich Low_complexity Low_complexity 1 26 0 316 349 45 82 chr3 197202898 197203228 -30321350 + L2 LINE L2 2947 3264 -8 228 318 0 0 chr3 197203235 197203298 -30321280 - MIR SINE MIR -114 148 86 1862 128 21 14 chr3 197203483 197203619 -30320959 + AluSx SINE Alu 1 135 -177 2310 92 0 0 chr3 197203619 197203911 -30320667 + AluSx SINE Alu 1 292 -20 1862 128 21 14 chr3 197203911 197204063 -30320515 + AluSx SINE Alu 135 291 -21 830 29 20 0 chr3 197204216 197204318 -30320260 + AluY SINE Alu 208 311 0 2216 84 3 39 chr3 197205017 197205326 -30319252 + AluSc SINE Alu 1 298 -11 295 288 99 0 chr3 197205913 197206024 -30318554 - MIR SINE MIR -123 139 18 2440 57 0 0 chr3 197206504 197206818 -30317760 - AluY SINE Alu 0 314 1 817 184 21 7 chr3 197206833 197206974 -30317604 - FRAM SINE Alu -30 146 4 409 192 0 0 chr3 197207057 197207130 -30317448 + AluS SINE Alu 229 301 -10 545 372 24 69 chr3 197207845 197208135 -30316443 + L2 LINE L2 2995 3271 -1 1751 170 3 11 chr3 197208176 197208494 -30316084 - AluJb SINE Alu 0 316 1 291 54 0 0 chr3 197208622 197208659 -30315919 + (A)n Simple_repeat Simple_repeat 1 37 0 240 360 90 0 chr3 197208834 197208934 -30315644 - L2 LINE L2 -8 3264 3156 2287 76 7 20 chr3 197208934 197209259 -30315319 - AluSp SINE Alu 0 313 1 583 204 0 0 chr3 197209259 197209357 -30315221 - FLAM_A SINE Alu -10 132 35 211 271 78 12 chr3 197209434 197209514 -30315064 - MIR SINE MIR -96 112 34 310 304 31 0 chr3 197210603 197210725 -30313853 + MIR SINE MIR 58 141 -67 671 273 116 55 chr3 197210733 197211044 -30313534 - L2 LINE L2 0 3313 2984 192 135 0 0 chr3 197211100 197211137 -30313441 + (TTA)n Simple_repeat Simple_repeat 2 38 0 1556 192 20 27 chr3 197212109 197212406 -30312172 + AluJo SINE Alu 1 295 -17 339 287 11 0 chr3 197212940 197213034 -30311544 - MER81 DNA DNA 0 114 20 634 200 23 8 chr3 197213710 197213840 -30310738 + MER94 DNA DNA 2 133 -1 230 225 127 0 chr3 197215269 197215340 -30309238 + L1MC3 LINE L1 6599 6678 -1107 2240 118 0 25 chr3 197216264 197216405 -30308173 + AluSx SINE Alu 1 144 -168 2491 63 0 20 chr3 197216405 197216707 -30307871 + AluY SINE Alu 1 296 -15 2240 118 0 25 chr3 197216707 197216880 -30307698 + AluSx SINE Alu 144 307 -5 187 218 103 39 chr3 197217155 197217233 -30307345 - MIR SINE MIR -77 185 103 2132 132 0 0 chr3 197217607 197217902 -30306676 - AluSx SINE Alu -17 295 1 1943 149 0 30 chr3 197218746 197219048 -30305530 - AluSx SINE Alu -19 293 1 2429 97 0 0 chr3 197219789 197220098 -30304480 - AluSc SINE Alu 0 309 1 735 274 62 4 chr3 197220205 197220446 -30304132 + MIR SINE MIR 8 262 0 216 310 175 22 chr3 197221959 197222227 -30302351 - L2 LINE L2 -1216 2098 1790 2124 100 3 7 chr3 197222528 197222817 -30301761 + AluSc SINE Alu 1 288 -21 329 286 0 0 chr3 197223904 197223981 -30300597 - MER63 DNA MER1_type 0 1061 985 2866 79 16 0 chr3 197223981 197224359 -30300219 + MER41A LTR ERV1 1 384 -170 261 0 0 0 chr3 197224884 197224913 -30299665 + (T)n Simple_repeat Simple_repeat 1 29 0 361 269 76 0 chr3 197225059 197225178 -30299400 - MIR SINE MIR -133 129 2 2733 177 39 4 chr3 197225189 197225681 -30298897 + LTR22 LTR ERVK 1 509 0 433 120 87 43 chr3 197225939 197226031 -30298547 + LTR9B LTR ERV1 7 102 -542 40923 69 8 6 chr3 197226031 197232147 -30292431 - L1PA6 LINE L1 -5 6149 22 2851 181 49 9 chr3 197232160 197232689 -30291889 + LTR9B LTR ERV1 95 644 0 356 211 105 53 chr3 197232689 197232784 -30291794 + HUERS-P3b LTR ERV1 1 100 -7318 808 194 43 38 chr3 197232791 197232977 -30291601 + HUERS-P3b LTR ERV1 440 626 -8293 6641 192 29 30 chr3 197233017 197234360 -30290218 + HUERS-P3b LTR ERV1 764 2104 -5314 1518 74 11 0 chr3 197234392 197234581 -30289997 - AluSx SINE Alu -4 306 116 231 244 119 60 chr3 197234663 197234831 -30289747 + MLT1L LTR MaLR 437 614 -1 197 284 137 0 chr3 197234870 197234972 -30289606 + L3 LINE CR1 1306 1421 -156 579 122 24 0 chr3 197234980 197235062 -30289516 - AluSc SINE Alu -111 198 115 2053 117 39 0 chr3 197235597 197235880 -30288698 - AluSq SINE Alu -19 294 1 246 327 53 27 chr3 197236455 197236605 -30287973 - MIR3 SINE MIR -2 206 53 309 51 0 0 chr3 197237534 197237573 -30287005 + (CA)n Simple_repeat Simple_repeat 2 40 0 209 238 0 33 chr3 197237573 197237695 -30286883 + (TA)n Simple_repeat Simple_repeat 1 118 0 336 285 0 31 chr3 197237696 197237826 -30286752 + (CATATA)n Simple_repeat Simple_repeat 6 131 0 2365 170 39 5 chr3 197237826 197238232 -30286346 + MER7C DNA MER2_type 2 421 -181 297 154 19 0 chr3 197238248 197238300 -30286278 + MER7C DNA MER2_type 369 421 -181 677 151 9 0 chr3 197238301 197238407 -30286171 - AluSq/x SINE Alu -204 108 2 5819 141 6 5 chr3 197238408 197239265 -30285313 + HUERS-P3 LTR ERV1 2427 3284 -5635 920 189 0 0 chr3 197239259 197239402 -30285176 + HUERS-P3 LTR ERV1 4540 4682 -4237 * 4014 142 14 17 chr3 197239439 197240171 -30284407 + HUERS-P3 LTR ERV1 4966 6300 -2619 2281 211 11 42 chr3 197240160 197240203 -30284375 + HUERS-P3 LTR ERV1 6487 6530 -888 * 2353 81 3 13 chr3 197240203 197240510 -30284068 + AluSg SINE Alu 1 304 -6 2281 211 11 42 chr3 197240510 197241027 -30283551 + HUERS-P3 LTR ERV1 6530 6961 -457 525 156 24 127 chr3 197241007 197241071 -30283507 + HUERS-P3 LTR ERV1 2383 2452 -2563 * 1938 120 33 7 chr3 197241071 197241386 -30283192 + AluSx SINE Alu 1 322 0 621 115 29 0 chr3 197241394 197241498 -30283080 + L1PA6 LINE L1 6048 6154 0 525 156 24 127 chr3 197241498 197241635 -30282943 + HUERS-P3 LTR ERV1 2459 2572 -2443 1399 175 13 4 chr3 197241948 197242189 -30282389 + HUERS-P3 LTR ERV1 6851 8919 0 3155 179 45 24 chr3 197242195 197242820 -30281758 + LTR9B LTR ERV1 7 644 0 218 293 17 0 chr3 197243615 197243673 -30280905 - MIR SINE MIR -140 122 64 2478 60 3 0 chr3 197243691 197243989 -30280589 + AluY SINE Alu 1 299 -12 955 186 51 19 chr3 197244759 197244885 -30279693 - L1PB4 LINE L1 -12 6144 6007 4761 50 5 18 chr3 197244885 197245483 -30279095 - LTR10C LTR ERV1 -1 590 1 955 186 51 19 chr3 197245483 197245571 -30279007 - L1PB4 LINE L1 -149 6007 5923 1666 217 35 14 chr3 197245629 197245998 -30278580 + LTR9B LTR ERV1 7 383 -261 302 250 277 0 chr3 197246055 197246203 -30278375 + MER5A DNA MER1_type 1 189 0 222 269 0 0 chr3 197247164 197247216 -30277362 + GA-rich Low_complexity Low_complexity 1 52 0 1974 105 6 67 chr3 197247651 197247964 -30276614 + AluSx SINE Alu 1 294 -18 2123 152 127 22 chr3 197248256 197248665 -30275913 + LTR47A LTR ERVL 1 452 0 1620 158 3 63 chr3 197249110 197249165 -30275413 + AluJb SINE Alu 1 58 -254 2921 10 0 0 chr3 197249165 197249476 -30275102 + AluYa5 SINE Alu 1 311 0 1620 158 3 63 chr3 197249476 197249736 -30274842 + AluJb SINE Alu 58 297 -15 210 274 137 0 chr3 197250170 197250265 -30274313 + L2 LINE L2 3206 3313 0 2018 132 4 0 chr3 197250742 197251023 -30273555 + AluSx SINE Alu 1 282 -30 1575 174 38 7 chr3 197251057 197251345 -30273233 + AluJb SINE Alu 1 297 -15 209 220 20 0 chr3 197251538 197251588 -30272990 - MIR SINE MIR -79 129 79 205 275 50 0 chr3 197251916 197251996 -30272582 - MIR3 SINE MIR -6 202 119 334 228 11 54 chr3 197252075 197252167 -30272411 - MER103 DNA DNA -43 123 36 180 200 50 0 chr3 197252219 197252259 -30272319 - MIR3 SINE MIR -50 158 117 769 223 76 70 chr3 197253580 197253881 -30270697 - MER102b DNA MER1_type -4 337 35 2356 92 16 0 chr3 197254096 197254401 -30270177 + AluSq SINE Alu 1 310 -3 471 291 97 0 chr3 197255080 197255286 -30269292 - MARNA DNA Mariner -174 412 187 2270 92 41 0 chr3 197255295 197255590 -30268988 - AluSq SINE Alu -6 307 1 964 148 0 77 chr3 197255600 197255782 -30268796 + AluSg/x SINE Alu 130 297 -15 26 0 0 0 chr3 197255914 197255940 -30268638 + AT_rich Low_complexity Low_complexity 1 26 0 2683 49 0 0 chr3 197255940 197256246 -30268332 - AluY SINE Alu -5 306 1 270 250 152 0 chr3 197256287 197256379 -30268199 + L2 LINE L2 3207 3312 -1 559 280 106 58 chr3 197256403 197256791 -30267787 + L1ME LINE L1 5411 5814 -307 426 296 91 16 chr3 197257507 197257693 -30266885 - L2 LINE L2 0 3272 3073 2627 52 7 0 chr3 197257711 197258020 -30266558 + AluY SINE Alu 1 311 0 1895 160 0 25 chr3 197258390 197258708 -30265870 - AluJb SINE Alu -2 310 1 181 279 0 0 chr3 197259207 197259250 -30265328 + L2 LINE L2 3262 3304 -9 1504 173 72 4 chr3 197259945 197260222 -30264356 - AluJo SINE Alu -16 296 1 351 44 0 0 chr3 197260422 197260467 -30264111 + (TG)n Simple_repeat Simple_repeat 2 46 0 629 247 53 26 chr3 197261503 197261693 -30262885 + MIR SINE MIR 22 216 -46 2304 122 0 0 chr3 197261705 197262017 -30262561 + AluSx SINE Alu 1 312 0 538 243 105 22 chr3 197262125 197262306 -30262272 - MIR SINE MIR -18 244 49 390 224 12 145 chr3 197262486 197262741 -30261837 - MIR SINE MIR -32 230 10 402 226 164 34 chr3 197262803 197262949 -30261629 - MER103 DNA DNA 0 166 2 1998 130 3 13 chr3 197262973 197263272 -30261306 - AluSx SINE Alu -16 296 1 771 245 77 23 chr3 197263283 197263544 -30261034 + MER93b LTR ERV1 3 277 -96 227 140 40 0 chr3 197263543 197263593 -30260985 + MER57A LTR ERV1 348 399 -4 * 251 317 43 0 chr3 197263788 197263927 -30260651 + MIR SINE MIR 34 179 -51 2472 95 0 0 chr3 197264014 197264320 -30260258 - AluSx SINE Alu -6 306 1 241 321 46 9 chr3 197265189 197265298 -30259280 - L2 LINE L2 -217 3055 2943 549 163 7 113 chr3 197265571 197265626 -30258952 - MER94 DNA DNA -5 129 70 1757 186 14 3 chr3 197265626 197265921 -30258657 + AluJb SINE Alu 1 298 -14 549 163 7 113 chr3 197265921 197266006 -30258572 - MER94 DNA DNA -64 70 4 1174 154 183 8 chr3 197266568 197266814 -30257764 - AluJo SINE Alu -13 289 1 206 264 0 19 chr3 197266843 197266896 -30257682 + MIR SINE MIR 106 157 -105 828 286 203 26 chr3 197267127 197267493 -30257085 + L2 LINE L2 2212 2512 -802 2110 108 0 51 chr3 197267493 197267807 -30256771 - AluSg SINE Alu -12 298 1 828 286 203 26 chr3 197267807 197268091 -30256487 + L2 LINE L2 2512 2977 -337 526 332 78 0 chr3 197268147 197268352 -30256226 + MIR SINE MIR 32 252 -10 209 306 69 14 chr3 197268525 197268597 -30255981 + L2 LINE L2 3136 3211 -61 2000 139 0 29 chr3 197268750 197269066 -30255512 + AluJo SINE Alu 6 312 0 541 178 50 0 chr3 197269167 197269268 -30255310 + U6 snRNA snRNA 1 106 -1 2259 95 3 13 chr3 197269286 197269590 -30254988 + AluSx SINE Alu 1 301 -11 236 59 0 0 chr3 197271194 197271228 -30253350 + L1MA3 LINE L1 6264 6297 -8 1990 124 14 0 chr3 197271264 197271554 -30253024 + AluSx SINE Alu 1 294 -18 183 313 0 21 chr3 197272199 197272247 -30252331 + MIR SINE MIR 23 69 -193 1048 264 125 39 chr3 197272282 197272817 -30251761 - MLT1G1 LTR MaLR -14 581 1 366 307 34 50 chr3 197272817 197272880 -30251698 + MIR SINE MIR 85 148 -114 2342 81 3 3 chr3 197272880 197273177 -30251401 - AluY SINE Alu -14 297 1 366 307 34 50 chr3 197273177 197273292 -30251286 + MIR SINE MIR 148 260 -2 327 220 0 0 chr3 197274173 197274232 -30250346 + MLT1H LTR MaLR 491 549 0 297 273 26 22 chr3 197274576 197274669 -30249909 - MIR3 SINE MIR -47 161 68 1559 177 20 33 chr3 197274780 197274973 -30249605 - AluJb SINE Alu -17 295 106 2129 131 52 35 chr3 197274973 197275340 -30249238 - THE1C LTR MaLR 0 375 3 1559 177 20 33 chr3 197275340 197275445 -30249133 - AluJb SINE Alu -206 106 1 2377 154 66 13 chr3 197275614 197276067 -30248511 - L1MB7 LINE L1 -16 6168 5692 3727 202 88 68 chr3 197276304 197277433 -30247145 + MER52A LTR ERV1 46 1196 -559 317 229 43 0 chr3 197277420 197277490 -30247088 + MER52A LTR ERV1 1676 1748 -7 * 1815 223 29 7 chr3 197277550 197277762 -30246816 - L1M4 LINE L1 -1978 4168 3962 234 0 0 0 chr3 197277762 197277788 -30246790 + (TA)n Simple_repeat Simple_repeat 1 26 0 1815 223 29 7 chr3 197277788 197278019 -30246559 - L1M4 LINE L1 -2184 3962 3715 385 318 125 57 chr3 197278084 197278373 -30246205 - L1MC/D LINE L1 -2012 5796 5466 2114 117 4 0 chr3 197278373 197278677 -30245901 - AluSq SINE Alu 0 305 1 385 318 125 57 chr3 197278677 197278811 -30245767 - L1MC/D LINE L1 -2342 5466 5343 225 135 0 0 chr3 197278829 197278866 -30245712 - MLT1E2 LTR MaLR 0 626 590 1867 142 3 44 chr3 197278893 197279210 -30245368 - AluJb SINE Alu -8 304 1 257 146 0 0 chr3 197279442 197279483 -30245095 - MLT1E2 LTR MaLR 0 626 586 319 299 156 19 chr3 197280663 197280874 -30243704 + MIR SINE MIR 3 242 -20 345 231 19 37 chr3 197282086 197282194 -30242384 + MER113 DNA MER1_type? 7 112 -409 2099 113 20 0 chr3 197282564 197282856 -30241722 - AluSx SINE Alu -12 300 3 2395 256 126 11 chr3 197282993 197283786 -30240792 - L1M4 LINE L1 -5643 899 16 434 339 43 13 chr3 197283865 197284095 -30240483 - Charlie8 DNA MER1_type -2142 275 39 245 218 18 0 chr3 197284176 197284231 -30240347 - L2 LINE L2 -8 3305 3250 722 245 170 80 chr3 197284589 197286147 -30238431 - HAL1 LINE L1 -768 1739 4 201 74 0 0 chr3 197286291 197286318 -30238260 + (TTG)n Simple_repeat Simple_repeat 1 27 0 2338 68 14 0 chr3 197286721 197287014 -30237564 + AluY SINE Alu 1 297 -14 1309 83 0 6 chr3 197287014 197287204 -30237374 + AluSc SINE Alu 132 320 0 496 262 9 0 chr3 197289188 197289295 -30235283 - MIR SINE MIR -67 141 34 23 33 0 0 chr3 197290244 197290274 -30234304 + AT_rich Low_complexity Low_complexity 1 30 0 2094 166 34 0 chr3 197291087 197291413 -30233165 - MER1B DNA MER1_type 0 337 1 1597 240 170 29 chr3 197291602 197292345 -30232233 - L1ME2 LINE L1 -173 5991 5133 320 247 14 0 chr3 197292787 197292860 -30231718 + MIR SINE MIR 189 262 0 7382 181 83 16 chr3 197292906 197293802 -30230776 - L1 LINE L1 -2213 3933 3099 2413 100 0 0 chr3 197293802 197294112 -30230466 - AluY SINE Alu -1 310 1 7382 181 83 16 chr3 197294112 197294836 -30229742 - L1 LINE L1 -3047 3099 2196 2029 145 13 7 chr3 197294836 197295146 -30229432 + AluSx SINE Alu 1 312 0 7382 181 83 16 chr3 197295146 197295189 -30229389 - L1 LINE L1 -3950 2196 2157 510 249 52 72 chr3 197296469 197296662 -30227916 + MIR SINE MIR 23 211 -51 356 305 35 35 chr3 197296703 197296844 -30227734 - MIR SINE MIR -73 189 49 29 28 0 0 chr3 197297246 197297282 -30227296 + AT_rich Low_complexity Low_complexity 1 36 0 264 169 211 0 chr3 197297327 197297398 -30227180 + AluS SINE Alu 52 100 -202 257 279 38 0 chr3 197297772 197297851 -30226727 + L2 LINE L2 3175 3256 -16 2224 66 7 14 chr3 197298061 197298348 -30226230 - AluY SINE Alu -16 295 11 236 269 77 48 chr3 197298954 197299058 -30225520 + MIR SINE MIR 145 251 -11 955 127 0 0 chr3 197300541 197300675 -30223903 + AluSq/x SINE Alu 1 134 -178 2200 111 3 0 chr3 197300684 197300972 -30223606 + AluSx SINE Alu 2 290 -22 2488 81 3 0 chr3 197301168 197301478 -30223100 - AluY SINE Alu 0 311 1 2497 66 3 0 chr3 197302081 197302382 -30222196 + AluY SINE Alu 1 302 -9 228 196 20 20 chr3 197302498 197302549 -30222029 - L2 LINE L2 -1 3271 3221 314 194 302 0 chr3 197304266 197304381 -30220197 + MER5A DNA MER1_type 4 160 -29 8916 87 6 2 chr3 197304533 197306468 -30218110 + L1PA7 LINE L1 4213 6154 0 240 276 86 67 chr3 197307253 197307358 -30217220 - L2 LINE L2 -23 3290 3184 38 0 0 0 chr3 197307542 197307580 -30216998 + AT_rich Low_complexity Low_complexity 1 38 0 281 241 0 0 chr3 197310832 197310886 -30213692 - L2 LINE L2 0 3272 3219 288 130 0 0 chr3 197311044 197311090 -30213488 + (T)n Simple_repeat Simple_repeat 1 46 0 482 196 26 143 chr3 197313132 197313247 -30211331 + MIR SINE MIR 95 181 -81 2174 103 14 0 chr3 197313247 197313539 -30211039 + AluSg SINE Alu 1 296 -14 482 196 26 143 chr3 197313539 197313612 -30210966 + MIR SINE MIR 181 261 -1 350 248 133 39 chr3 197314910 197315133 -30209445 + MIR SINE MIR 1 240 -22 524 336 88 4 chr3 197315758 197315984 -30208594 + MIR SINE MIR 5 249 -13 1935 149 26 40 chr3 197316527 197316875 -30207703 - MER2 DNA MER2_type 0 344 2 1935 140 3 0 chr3 197316875 197317161 -30207417 + L1MC1 LINE L1 6047 6333 0 21 0 0 0 chr3 197318514 197318535 -30206043 + AT_rich Low_complexity Low_complexity 1 21 0 2170 126 0 0 chr3 197318917 197319211 -30205367 - AluSx SINE Alu -18 294 1 265 362 24 8 chr3 197319262 197319386 -30205192 - MIR SINE MIR -65 143 31 1181 165 14 23 chr3 197319648 197319866 -30204712 - AluJo SINE Alu -10 302 87 312 283 68 129 chr3 197321145 197321424 -30203154 + L2 LINE L2 3002 3263 -9 224 59 29 0 chr3 197321614 197321648 -30202930 + (CAA)n Simple_repeat Simple_repeat 2 36 0 195 267 0 67 chr3 197321968 197322028 -30202550 - MIR3 SINE MIR -30 178 123 285 344 22 33 chr3 197323940 197324030 -30200548 + L2 LINE L2 3003 3091 -181 1132 183 25 0 chr3 197325968 197326165 -30198413 + AluJo SINE Alu 1 202 -110 3547 178 67 5 chr3 197326186 197326859 -30197719 + MST-int LTR MaLR 1 715 -936 396 125 12 232 chr3 197326859 197326994 -30197584 + MSTB1 LTR MaLR 267 385 -47 2857 229 68 7 chr3 197327001 197328017 -30196561 + L1ME LINE L1 4645 5731 -435 678 25 0 0 chr3 197328905 197328985 -30195593 + (CCA)n Simple_repeat Simple_repeat 1 80 0 239 318 0 0 chr3 197329056 197329122 -30195456 + MIR SINE MIR 87 152 -110 252 296 8 80 chr3 197329572 197329697 -30194881 - MIR SINE MIR -93 169 54 233 265 44 0 chr3 197329729 197329797 -30194781 - MIR SINE MIR -90 172 102 630 262 100 5 chr3 197331524 197331734 -30192844 - MIR SINE MIR -26 236 7 237 250 0 0 chr3 197331807 197331851 -30192727 + L2 LINE L2 3213 3256 -16 466 341 75 19 chr3 197331916 197332130 -30192448 + L3 LINE CR1 915 1140 -437 303 362 43 9 chr3 197332223 197332339 -30192239 + MER5A DNA MER1_type 70 189 0 1130 186 11 0 chr3 197332351 197332534 -30192044 - MER5A DNA MER1_type -4 185 1 279 176 0 132 chr3 197332577 197332668 -30191910 + L3 LINE CR1 1392 1470 -107 210 158 0 0 chr3 197333054 197333092 -30191486 + A-rich Low_complexity Low_complexity 1 38 0 34 55 0 0 chr3 197333418 197333473 -30191105 + AT_rich Low_complexity Low_complexity 1 55 0 29 0 0 0 chr3 197335362 197335391 -30189187 + AT_rich Low_complexity Low_complexity 1 29 0 250 264 114 78 chr3 197335410 197335577 -30189001 - MIR SINE MIR -61 201 29 2190 272 102 39 chr3 197335650 197336930 -30187648 + L2 LINE L2 1927 3297 -16 931 171 41 18 chr3 197337069 197337239 -30187339 - AluSc SINE Alu -8 301 128 690 289 72 5 chr3 197337562 197337770 -30186808 + MIR SINE MIR 20 241 -21 798 219 24 53 chr3 197337825 197337984 -30186594 - L1MD3 LINE L1 0 7995 7844 2467 84 0 0 chr3 197337984 197338294 -30186284 + AluSx SINE Alu 1 310 -2 798 219 24 53 chr3 197338294 197338381 -30186197 - L1MD3 LINE L1 -151 7844 7756 1563 148 60 21 chr3 197338647 197338931 -30185647 - AluJb SINE Alu -17 295 1 239 81 0 0 chr3 197340866 197340903 -30183675 + L1MA1 LINE L1 6262 6298 -4 2116 125 0 0 chr3 197340936 197341253 -30183325 + AluSq SINE Alu 1 317 0 201 231 0 0 chr3 197341639 197341678 -30182900 + (TG)n Simple_repeat Simple_repeat 1 39 0 469 75 15 0 chr3 197342777 197342844 -30181734 + MER41A LTR ERV1 399 466 -88 22 70 0 0 chr3 197342875 197342918 -30181660 + AT_rich Low_complexity Low_complexity 1 43 0 635 286 63 0 chr3 197346162 197346337 -30178241 + MER91B DNA MER1_type 5 190 0 2329 94 7 0 chr3 197347361 197347660 -30176918 + AluSx SINE Alu 9 309 -3 1903 112 11 18 chr3 197348342 197348654 -30175924 - AluSg SINE Alu 0 314 5 425 147 101 7 chr3 197349253 197349379 -30175199 - L1M4 LINE L1 -699 5475 5329 708 186 48 37 chr3 197349415 197349613 -30174965 - MER6 DNA MER2_type 0 865 -65 1844 108 17 0 chr3 197349620 197349915 -30174663 - L1P LINE L1 -3549 2597 2298 * 3849 201 46 6 chr3 197349913 197350628 -30173950 - L1PA13 LINE L1 -5842 945 202 408 263 66 37 chr3 197350633 197350807 -30173771 - Tigger5 DNA MER2_type -176 2147 4 592 296 40 35 chr3 197350869 197351391 -30173187 - L1ME LINE L1 -5069 1001 527 688 269 3 90 chr3 197351516 197351817 -30172761 - L1ME LINE L1 -5539 531 257 480 60 75 0 chr3 197351850 197351917 -30172661 - L1PA11 LINE L1 -2 6172 6101 581 315 22 26 chr3 197351917 197352190 -30172388 - L1ME LINE L1 -5796 274 3 2479 54 7 3 chr3 197352206 197352504 -30172074 - AluY SINE Alu -12 299 1 1111 69 0 0 chr3 197352507 197352638 -30171940 - AluSp SINE Alu -182 131 1 499 269 132 0 chr3 197352662 197352859 -30171719 - MIR SINE MIR -28 234 12 248 225 62 12 chr3 197352869 197352949 -30171629 + MER103 DNA DNA 74 157 -9 28 0 0 0 chr3 197353143 197353171 -30171407 + AT_rich Low_complexity Low_complexity 1 28 0 921 223 192 54 chr3 197353179 197353570 -30171008 - LTR16A1 LTR ERVL -9 448 4 213 178 0 0 chr3 197353754 197353799 -30170779 + CT-rich Low_complexity Low_complexity 1 45 0 2039 347 68 26 chr3 197353843 197355276 -30169302 - ERVL LTR ERVL -504 5260 3768 244 279 73 0 chr3 197355399 197355467 -30169111 + LTR67 LTR ERVL 3 75 -482 2792 144 22 2 chr3 197355776 197356192 -30168386 - MSTB LTR MaLR -2 424 1 289 311 13 46 chr3 197356196 197356347 -30168231 + LTR67 LTR ERVL 412 557 0 201 223 32 11 chr3 197356863 197356957 -30167621 + CT-rich Low_complexity Low_complexity 1 96 0 288 255 59 72 chr3 197356972 197357125 -30167453 - L1ME4a LINE L1 -12 6109 5959 213 128 64 0 chr3 197357175 197357222 -30167356 + (TA)n Simple_repeat Simple_repeat 2 51 0 332 287 28 9 chr3 197357460 197357568 -30167010 - L1ME4a LINE L1 -490 5631 5522 2063 117 11 0 chr3 197357995 197358300 -30166278 + AluSx SINE Alu 1 308 0 882 225 37 5 chr3 197358663 197358881 -30165697 + L1ME4a LINE L1 5540 5764 -357 251 256 26 0 chr3 197358882 197358960 -30165618 + MER116 DNA Mariner 1 80 0 2365 82 3 0 chr3 197359089 197359381 -30165197 - AluY SINE Alu -18 293 1 2287 108 0 0 chr3 197359639 197359935 -30164643 + AluSq SINE Alu 1 296 -17 983 261 35 0 chr3 197360932 197361158 -30163420 + MIR SINE MIR 23 256 -6 2241 118 3 3 chr3 197361395 197361700 -30162878 - AluSx SINE Alu -7 305 1 494 160 66 47 chr3 197362206 197362312 -30162266 + ORSL DNA AcHobo 1 108 -167 2236 113 0 25 chr3 197362493 197362812 -30161766 - AluSx SINE Alu -1 311 1 1311 135 4 41 chr3 197362831 197363076 -30161502 - AluSx SINE Alu -16 296 61 5972 144 36 6 chr3 197363619 197364607 -30159971 + Tigger1 DNA MER2_type 1401 2418 0 1551 138 17 0 chr3 197366099 197366339 -30158239 + AluY SINE Alu 60 303 -8 934 235 35 45 chr3 197366342 197366631 -30157947 + MLT1C LTR MaLR 177 462 -5 22 0 0 0 chr3 197366822 197366844 -30157734 + AT_rich Low_complexity Low_complexity 1 22 0 465 200 350 0 chr3 197367385 197367525 -30157053 + MER5A DNA MER1_type 1 189 0 2306 107 0 3 chr3 197367873 197368182 -30156396 - AluSq SINE Alu -5 308 1 309 51 0 0 chr3 197368579 197368618 -30155960 + (TG)n Simple_repeat Simple_repeat 1 39 0 245 248 234 0 chr3 197369499 197369636 -30154942 + L1ME4a LINE L1 5953 6121 0 212 370 63 8 chr3 197369911 197370038 -30154540 + MIR SINE MIR 38 171 -91 289 258 110 7 chr3 197370250 197370403 -30154175 - MIR SINE MIR -64 144 25 2254 100 0 7 chr3 197371081 197371371 -30153207 + AluSg SINE Alu 1 288 -22 963 223 64 43 chr3 197371927 197372209 -30152369 + L1MA9 LINE L1 5987 6274 -38 44 46 0 0 chr3 197372211 197372276 -30152302 + AT_rich Low_complexity Low_complexity 1 65 0 2399 85 6 22 chr3 197372284 197372602 -30151976 + AluSq SINE Alu 1 313 0 233 309 0 91 chr3 197372923 197373000 -30151578 + MIR SINE MIR 14 80 -182 2128 193 66 53 chr3 197373000 197373513 -30151065 + MLT2B1 LTR ERVL 1 520 0 233 309 0 91 chr3 197373513 197373545 -30151033 + MIR SINE MIR 80 113 -149 245 245 208 0 chr3 197374621 197374760 -30149818 + MIR SINE MIR 38 206 -56 7022 161 22 16 chr3 197374771 197375063 -30149515 + L1MCa LINE L1 18 307 -6119 2565 116 8 3 chr3 197375063 197375425 -30149153 + THE1B LTR MaLR 1 364 0 7022 161 22 16 chr3 197375425 197376388 -30148190 + L1MCa LINE L1 307 1281 -5145 724 231 13 5 chr3 197376381 197376574 -30148004 + L1MCa LINE L1 2473 2667 -3759 * 278 167 0 0 chr3 197376596 197376644 -30147934 - L1M4 LINE L1 -2403 3743 3696 2483 65 0 16 chr3 197376644 197376952 -30147626 - AluY SINE Alu -8 303 1 3132 146 22 20 chr3 197376952 197377460 -30147118 - HSMAR2 DNA Mariner -223 1079 571 7079 173 95 76 chr3 197377467 197379115 -30145463 - MER52A LTR ERV1 -19 1736 58 3631 134 11 7 chr3 197379724 197380284 -30144294 - HSMAR2 DNA Mariner -739 563 2 3830 142 9 20 chr3 197380285 197380719 -30143859 - Ricksha DNA DNA -916 2330 1904 2412 88 0 0 chr3 197380719 197381024 -30143554 - AluY SINE Alu -6 305 1 3830 142 9 20 chr3 197381024 197381222 -30143356 - Ricksha DNA DNA -1342 1904 1705 343 161 92 35 chr3 197381201 197381288 -30143290 - Ricksha DNA DNA -3146 100 9 * 469 309 79 17 chr3 197381368 197381524 -30143054 + LTR33 LTR ERVL 4 149 -372 2425 123 47 33 chr3 197381524 197381747 -30142831 - MSTA LTR MaLR 0 428 195 2288 114 0 0 chr3 197381747 197382044 -30142534 - AluSx SINE Alu -15 297 1 2425 123 47 33 chr3 197382044 197382242 -30142336 - MSTA LTR MaLR -233 195 1 469 309 79 17 chr3 197382242 197382535 -30142043 + LTR33 LTR ERVL 149 520 -1 1853 155 7 23 chr3 197382603 197382913 -30141665 + AluSx SINE Alu 1 305 -7 313 271 33 60 chr3 197383074 197383225 -30141353 - MER5A DNA MER1_type 0 189 43 * 671 156 15 52 chr3 197383091 197383226 -30141352 + MER5A DNA MER1_type 30 159 -30 368 252 45 9 chr3 197383338 197383449 -30141129 + MER5A DNA MER1_type 1 115 -74 2018 151 36 36 chr3 197383475 197383839 -30140739 + THE1B LTR MaLR 1 364 0 490 199 173 19 chr3 197384347 197384503 -30140075 + MER5A DNA MER1_type 9 188 -1 1288 180 14 0 chr3 197384504 197384745 -30139833 + AluJb SINE Alu 87 312 0 723 248 25 0 chr3 197385159 197385320 -30139258 + FAM SINE Alu 1 165 -10 2072 129 3 0 chr3 197385472 197385759 -30138819 - AluSp SINE Alu -25 288 1 1960 135 29 52 chr3 197386343 197386727 -30137851 + THE1C LTR MaLR 1 375 0 196 336 103 9 chr3 197386828 197386944 -30137634 - MIR3 SINE MIR -67 141 15 309 51 0 0 chr3 197387527 197387566 -30137012 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 470 271 119 40 chr3 197387881 197388183 -30136395 - L2 LINE L2 -9 3263 2938 569 111 26 120 chr3 197388276 197388393 -30136185 - Charlie1b DNA MER1_type 0 523 418 2688 39 0 0 chr3 197388393 197388699 -30135879 - AluY SINE Alu -5 306 1 835 180 43 12 chr3 197388730 197388891 -30135687 + AluJb SINE Alu 139 304 -8 1376 170 154 48 chr3 197388913 197389059 -30135519 - Charlie1b DNA MER1_type -2351 410 281 2569 62 3 0 chr3 197389059 197389363 -30135215 - AluSx SINE Alu -5 307 3 1376 170 154 48 chr3 197389363 197389587 -30134991 - Charlie1b DNA MER1_type -2480 281 1 183 367 59 35 chr3 197389669 197390007 -30134571 - L2 LINE L2 -571 2743 2398 1639 260 154 11 chr3 197390143 197390708 -30133870 + MER69 DNA AcHobo 6 651 -1875 2353 110 0 0 chr3 197390732 197391033 -30133545 + AluSg SINE Alu 1 301 -9 734 312 144 18 chr3 197391050 197391508 -30133070 + MLT1G1 LTR MaLR 79 594 -1 253 339 67 15 chr3 197391663 197391858 -30132720 - L2 LINE L2 -1575 1739 1535 2520 74 0 7 chr3 197392106 197392416 -30132162 + AluY SINE Alu 1 308 -3 2601 27 7 3 chr3 197392458 197392755 -30131823 + AluY SINE Alu 1 298 -13 881 161 0 0 chr3 197392780 197392910 -30131668 + FLAM_C SINE Alu 1 130 -3 2165 122 7 0 chr3 197393263 197393557 -30131021 + AluSx SINE Alu 1 296 -16 402 226 164 34 chr3 197393581 197393727 -30130851 + MER103 DNA DNA 2 166 0 390 224 12 145 chr3 197393789 197394044 -30130534 + MIR SINE MIR 10 230 -32 538 243 105 22 chr3 197394224 197394405 -30130173 + MIR SINE MIR 49 244 -18 2304 122 0 0 chr3 197394513 197394825 -30129753 - AluSx SINE Alu 0 312 1 602 246 52 31 chr3 197394837 197395028 -30129550 - MIR SINE MIR -46 216 22 1846 225 100 45 chr3 197396162 197396753 -30127825 - L1M4 LINE L1 -2945 3201 2565 2421 104 0 0 chr3 197396753 197397061 -30127517 + AluSg SINE Alu 2 309 -1 1846 225 100 45 chr3 197397061 197397162 -30127416 - L1M4 LINE L1 -3581 2565 2471 315 296 164 58 chr3 197397816 197398232 -30126346 - L2 LINE L2 -9 3263 2804 192 282 27 87 chr3 197398615 197398764 -30125814 + MIR3 SINE MIR 64 203 -5 303 28 0 0 chr3 197400041 197400077 -30124501 + (TA)n Simple_repeat Simple_repeat 2 37 0 2391 58 0 17 chr3 197400077 197400370 -30124208 - AluY SINE Alu -23 288 1 180 0 0 0 chr3 197400681 197400701 -30123877 + (A)n Simple_repeat Simple_repeat 1 20 0 2272 98 0 55 chr3 197400767 197401095 -30123483 + AluSg SINE Alu 1 310 0 874 161 0 0 chr3 197401192 197401316 -30123262 + FLAM_C SINE Alu 1 124 -19 2307 78 0 19 chr3 197401326 197401635 -30122943 + AluY SINE Alu 1 303 -8 480 165 138 0 chr3 197401987 197402096 -30122482 + MER5C DNA MER1_type 1 124 -200 389 117 0 0 chr3 197402176 197402238 -30122340 + L1M1 LINE L1 5697 5758 -405 334 239 110 0 chr3 197402254 197402363 -30122215 + MIR SINE MIR 45 165 -97 312 250 150 0 chr3 197402411 197402511 -30122067 - MIR3 SINE MIR -45 163 49 2264 114 0 0 chr3 197402956 197403255 -30121323 - AluSx SINE Alu -12 300 2 302 302 16 31 chr3 197403531 197403660 -30120918 - LTR67 LTR ERVL -429 128 2 250 292 0 0 chr3 197403800 197403872 -30120706 + T-rich Low_complexity Low_complexity 2 73 0 408 205 27 36 chr3 197403992 197404104 -30120474 - L2 LINE L2 0 3313 3203 945 138 7 0 chr3 197404228 197404371 -30120207 + MER41B LTR ERV1 1 144 -491 2059 97 10 175 chr3 197404371 197404782 -30119796 - LTR14B LTR ERVK -1 607 1 788 61 45 106 chr3 197404785 197404917 -30119661 - HERVK14 LTR ERVK 0 5945 5822 323 194 0 16 chr3 197404917 197404979 -30119599 - MER41C LTR ERV1 -493 61 1 3199 69 31 24 chr3 197404979 197405627 -30118951 - HERVK14 LTR ERVK -186 5759 5038 371 41 0 0 chr3 197405627 197405676 -30118902 - HERV17 LTR ERV1 -8145 481 433 * 11159 55 4 3 chr3 197405675 197407130 -30117448 - HERV17 LTR ERV1 -3073 5553 2430 9044 88 3 8 chr3 197407113 197408311 -30116267 - HERV17 LTR ERV1 -6610 2016 824 * 6378 57 13 23 chr3 197408555 197408844 -30115734 - HERVK14 LTR ERVK -5128 817 527 2642 53 0 0 chr3 197408844 197409147 -30115431 - AluY SINE Alu -8 303 1 6378 57 13 23 chr3 197409147 197409682 -30114896 - HERVK14 LTR ERVK -5418 527 1 1917 91 19 198 chr3 197409682 197410101 -30114477 - LTR14B LTR ERVK 0 608 1 2431 126 8 11 chr3 197410104 197410476 -30114102 + MER41B LTR ERV1 138 508 -127 1849 132 0 0 chr3 197410476 197410734 -30113844 - AluSq SINE Alu -1 312 55 1098 198 34 82 chr3 197410735 197411063 -30113515 + MLT1C LTR MaLR 152 463 -4 369 316 101 28 chr3 197411790 197411893 -30112685 + L2 LINE L2 2249 2343 -971 2322 89 3 3 chr3 197411893 197412186 -30112392 - AluSg SINE Alu -17 293 1 369 316 101 28 chr3 197412186 197412329 -30112249 + L2 LINE L2 2343 2513 -801 296 302 150 58 chr3 197412405 197412536 -30112042 + L2 LINE L2 2054 2172 -1142 297 0 0 0 chr3 197412536 197412569 -30112009 + (CA)n Simple_repeat Simple_repeat 2 34 0 296 302 150 58 chr3 197412569 197412831 -30111747 + L2 LINE L2 2172 2483 -831 2085 134 3 31 chr3 197412954 197413275 -30111303 + AluSx SINE Alu 1 312 0 189 234 21 0 chr3 197413821 197413868 -30110710 + MIR SINE MIR 206 253 -9 779 257 152 54 chr3 197414121 197414657 -30109921 + L2 LINE L2 2497 3084 -229 2450 97 0 0 chr3 197414659 197414970 -30109608 - AluSp SINE Alu -2 311 1 514 241 183 27 chr3 197414992 197415216 -30109362 + MIR SINE MIR 2 260 -2 2184 113 14 0 chr3 197415950 197416243 -30108335 + AluSq SINE Alu 1 297 -16 453 19 0 0 chr3 197416336 197416390 -30108188 + (GA)n Simple_repeat Simple_repeat 2 55 0 2223 115 0 10 chr3 197416390 197416702 -30107876 + AluSg SINE Alu 2 310 0 1569 177 110 34 chr3 197417125 197417649 -30106929 - L1MC4 LINE L1 -681 7361 6734 211 242 283 20 chr3 197420216 197420315 -30104263 + MIR SINE MIR 118 242 -20 2113 72 14 17 chr3 197420458 197420748 -30103830 + AluSq SINE Alu 1 289 -24 254 218 43 64 chr3 197420953 197421153 -30103425 + MSTB1 LTR MaLR 2 197 -235 450 200 129 36 chr3 197421155 197421295 -30103283 + FRAM SINE Alu 1 152 -24 738 147 51 13 chr3 197421309 197421466 -30103112 + MSTB1 LTR MaLR 197 359 -73 2035 154 0 0 chr3 197421469 197421762 -30102816 + AluSx SINE Alu 1 293 -19 986 167 7 0 chr3 197421765 197421915 -30102663 - FRAM SINE Alu -15 151 1 1588 174 3 65 chr3 197422004 197422326 -30102252 + AluJo SINE Alu 1 302 -10 1663 167 7 23 chr3 197422655 197422955 -30101623 - AluJb SINE Alu -17 295 1 615 327 87 65 chr3 197422979 197424132 -30100446 - L2 LINE L2 -56 3216 2023 186 320 149 22 chr3 197424219 197424400 -30100178 - L2 LINE L2 -2409 905 702 183 376 24 68 chr3 197424570 197424708 -30099870 + L2 LINE L2 2555 2679 -635 2253 99 0 0 chr3 197424708 197425010 -30099568 - AluSx SINE Alu -10 302 1 183 376 24 68 chr3 197425010 197425121 -30099457 + L2 LINE L2 2679 2793 -521 2348 68 0 46 chr3 197425151 197425476 -30099102 - AluY SINE Alu -1 310 1 233 91 0 0 chr3 197425525 197425558 -30099020 - Alu SINE Alu -27 275 243 574 198 0 0 chr3 197425561 197425657 -30098921 - AluJ/FLAM SINE Alu -216 96 1 349 280 130 0 chr3 197426029 197426129 -30098449 + L2 LINE L2 3200 3312 -1 380 243 164 7 chr3 197426473 197426625 -30097953 + MIR SINE MIR 48 223 -39 381 352 92 0 chr3 197426659 197426801 -30097777 + L2 LINE L2 3117 3271 -1 914 256 96 0 chr3 197428926 197429156 -30095422 + MIR SINE MIR 9 260 -2 2404 74 7 0 chr3 197429714 197430010 -30094568 - AluSq SINE Alu -15 298 1 1709 148 11 28 chr3 197430686 197430970 -30093608 - AluJo SINE Alu -23 289 11 379 292 80 0 chr3 197431828 197431965 -30092613 - MIR SINE MIR -18 244 97 1813 175 36 31 chr3 197433436 197433824 -30090754 - MLT1B LTR MaLR 0 390 1 28 0 0 0 chr3 197433870 197433898 -30090680 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr3 197434513 197434542 -30090036 + AT_rich Low_complexity Low_complexity 1 29 0 23 68 0 0 chr3 197434779 197434823 -30089755 + AT_rich Low_complexity Low_complexity 1 44 0 2392 74 3 0 chr3 197434997 197435295 -30089283 - AluY SINE Alu -11 300 2 31 68 0 0 chr3 197435439 197435498 -30089080 + AT_rich Low_complexity Low_complexity 1 59 0 1691 115 0 12 chr3 197435498 197435741 -30088837 - AluSx SINE Alu -72 240 1 21 95 0 0 chr3 197435973 197436036 -30088542 + AT_rich Low_complexity Low_complexity 1 63 0 264 30 0 0 chr3 197436050 197436083 -30088495 + (CA)n Simple_repeat Simple_repeat 2 34 0 2484 62 3 10 chr3 197437016 197437325 -30087253 - AluY SINE Alu -4 307 1 835 141 0 22 chr3 197438028 197438163 -30086415 - FLAM_C SINE Alu -1 132 1 2344 94 0 0 chr3 197438294 197438602 -30085976 - AluSx SINE Alu -4 308 1 29 0 0 0 chr3 197439412 197439441 -30085137 + AT_rich Low_complexity Low_complexity 1 29 0 408 257 149 17 chr3 197441488 197441663 -30082915 - L2 LINE L2 -6 3307 3110 495 227 31 0 chr3 197442310 197442407 -30082171 - MIR SINE MIR -110 152 53 442 313 272 25 chr3 197442503 197443149 -30081429 + L2 LINE L2 1600 2405 -909 574 343 139 24 chr3 197443169 197443726 -30080852 + L2 LINE L2 2601 3298 -15 809 120 0 0 chr3 197443853 197443961 -30080617 - AluY SINE Alu -203 108 1 207 292 56 14 chr3 197443974 197444046 -30080532 + MIR3 SINE MIR 125 199 -9 33 0 0 0 chr3 197444297 197444330 -30080248 + AT_rich Low_complexity Low_complexity 1 33 0 2151 131 3 0 chr3 197444449 197444747 -30079831 + AluSx SINE Alu 1 299 -13 2049 134 26 0 chr3 197445778 197446083 -30078495 + AluSq SINE Alu 1 313 0 696 181 31 0 chr3 197447032 197447159 -30077419 - FLAM_C SINE Alu 0 133 3 303 284 86 0 chr3 197447691 197447772 -30076806 + L2 LINE L2 3183 3270 -2 379 208 10 42 chr3 197447782 197447878 -30076700 - MIR SINE MIR -10 252 160 927 229 127 47 chr3 197448058 197448459 -30076119 - L1ME LINE L1 -452 5712 5280 210 269 15 37 chr3 197448473 197448607 -30075971 + (TA)n Simple_repeat Simple_repeat 1 131 0 3299 239 67 19 chr3 197448609 197449408 -30075170 - L1ME LINE L1 -905 5241 4359 1738 144 52 24 chr3 197449408 197449576 -30075002 - AluJb SINE Alu -13 299 118 216 67 0 0 chr3 197449576 197449606 -30074972 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1738 144 52 24 chr3 197449606 197449728 -30074850 - AluJb SINE Alu -194 118 1 3299 239 67 19 chr3 197449728 197450169 -30074409 - L1ME LINE L1 -1787 4359 3941 2524 50 0 0 chr3 197450192 197450494 -30074084 - AluY SINE Alu -9 302 1 1982 151 35 13 chr3 197450495 197450867 -30073711 - L1MC1 LINE L1 -6 6327 5948 521 251 12 0 chr3 197451112 197451279 -30073299 + L1 LINE L1 2219 2387 -3759 458 179 8 43 chr3 197451301 197451349 -30073229 - L1ME LINE L1 -2403 3743 3695 2746 16 0 0 chr3 197451349 197451652 -30072926 - AluY SINE Alu -8 303 1 458 179 8 43 chr3 197451652 197451720 -30072858 - L1ME LINE L1 -2451 3695 3631 550 84 0 0 chr3 197451724 197451795 -30072783 + AluSp/q SINE Alu 208 278 -35 324 0 0 0 chr3 197451799 197451835 -30072743 + (TAAA)n Simple_repeat Simple_repeat 3 38 0 304 314 0 0 chr3 197451836 197451941 -30072637 + L1 LINE L1 3749 3853 -2293 1522 127 0 9 chr3 197451942 197452074 -30072504 + AluSg SINE Alu 1 132 -178 192 40 0 0 chr3 197452074 197452099 -30072479 + (CA)n Simple_repeat Simple_repeat 2 26 0 1522 127 0 9 chr3 197452099 197452179 -30072399 + AluSg SINE Alu 132 211 -99 1425 112 5 0 chr3 197452198 197452422 -30072156 - HSMAR2 DNA Mariner -1 1301 1077 2204 114 0 13 chr3 197452422 197452738 -30071840 - AluSx SINE Alu 0 312 1 680 243 69 24 chr3 197452763 197453010 -30071568 + MER93b LTR ERV1 20 277 -96 288 325 41 0 chr3 197453254 197453393 -30071185 + MIR3 SINE MIR 34 179 -51 2476 94 0 0 chr3 197453480 197453788 -30070790 - AluSx SINE Alu -4 308 1 200 338 94 25 chr3 197454606 197454766 -30069812 - L2 LINE L2 -159 3113 2943 493 163 7 113 chr3 197455039 197455094 -30069484 - MER94 DNA DNA -5 129 70 1776 183 14 3 chr3 197455094 197455389 -30069189 + AluJb SINE Alu 1 298 -14 493 163 7 113 chr3 197455389 197455474 -30069104 - MER94 DNA DNA -64 70 4 1159 158 183 8 chr3 197456036 197456282 -30068296 - AluJo SINE Alu -13 289 1 205 264 0 19 chr3 197456311 197456364 -30068214 + MIR SINE MIR 106 157 -105 838 287 197 29 chr3 197456595 197456966 -30067612 + L2 LINE L2 2212 2519 -795 2178 108 0 41 chr3 197456966 197457282 -30067296 - AluSg SINE Alu -7 303 1 838 287 197 29 chr3 197457282 197457566 -30067012 + L2 LINE L2 2519 2977 -337 531 332 78 0 chr3 197457622 197457827 -30066751 + MIR SINE MIR 32 252 -10 213 306 69 14 chr3 197458000 197458072 -30066506 + L2 LINE L2 3136 3211 -61 2017 139 0 29 chr3 197458225 197458541 -30066037 + AluJo SINE Alu 6 312 0 492 178 50 0 chr3 197458642 197458743 -30065835 + U6 snRNA snRNA 1 106 -1 2257 97 3 13 chr3 197458761 197459069 -30065509 + AluSx SINE Alu 1 305 -7 377 193 91 0 chr3 197460019 197460107 -30064471 + LTR9B-int LTR ERV1 6205 6300 -2619 * 2084 208 7 9 chr3 197460096 197460139 -30064439 + LTR9B-int LTR ERV1 6487 6529 -2390 2313 82 3 13 chr3 197460139 197460445 -30064133 + AluSg SINE Alu 1 303 -7 2084 208 7 9 chr3 197460445 197460828 -30063750 + LTR9B-int LTR ERV1 6529 6912 -2007 389 241 0 1 chr3 197460839 197460941 -30063637 + LTR9B-int LTR ERV1 6846 6933 -485 469 156 24 127 chr3 197460943 197461007 -30063571 + LTR9B-int LTR ERV1 2383 2452 -2563 1908 120 33 7 chr3 197461007 197461322 -30063256 + AluSx SINE Alu 1 322 0 605 115 29 0 chr3 197461330 197461434 -30063144 + L1PA6 LINE L1 6048 6154 0 469 156 24 127 chr3 197461434 197461571 -30063007 + LTR9B-int LTR ERV1 2459 2572 -2443 1299 162 9 0 chr3 197461909 197462125 -30062453 + LTR9B-int LTR ERV1 8702 8919 0 2876 179 45 24 chr3 197462131 197462756 -30061822 + LTR9B LTR ERV1 7 644 0 237 293 17 0 chr3 197463551 197463609 -30060969 - MIR SINE MIR -140 122 64 2145 51 51 0 chr3 197463627 197463900 -30060678 + AluY SINE Alu 1 287 -24 1498 159 4 34 chr3 197463917 197464181 -30060397 + AluJb SINE Alu 42 297 -15 240 263 137 0 chr3 197464615 197464710 -30059868 + L2 LINE L2 3206 3313 0 2288 96 0 10 chr3 197465187 197465500 -30059078 + AluY SINE Alu 1 310 -1 267 167 21 0 chr3 197465502 197465550 -30059028 - MER5B DNA MER1_type -129 49 1 426 279 48 18 chr3 197465943 197466108 -30058470 + L1ME4a LINE L1 5528 5697 -424 2343 88 7 7 chr3 197466274 197466581 -30057997 + AluSx SINE Alu 1 307 -5 307 308 60 0 chr3 197466600 197466733 -30057845 + L1ME4a LINE L1 5772 5912 -209 297 174 0 0 chr3 197466902 197466946 -30057632 + AluJb SINE Alu 4 47 -256 747 169 0 66 chr3 197466946 197467037 -30057541 - LTR32 LTR ERVL 0 471 394 2251 110 0 19 chr3 197467037 197467355 -30057223 - AluSx SINE Alu 0 312 1 747 169 0 66 chr3 197467355 197467429 -30057149 - LTR32 LTR ERVL -77 394 317 1662 186 44 0 chr3 197467484 197467802 -30056776 - LTR32 LTR ERVL -119 352 21 502 103 0 124 chr3 197467803 197467900 -30056678 + AluJb SINE Alu 43 127 -185 430 133 0 0 chr3 197468282 197468342 -30056236 - AluJ/FLAM SINE Alu -247 65 6 200 308 77 11 chr3 197468489 197468580 -30055998 - L2 LINE L2 -44 3228 3132 278 65 0 22 chr3 197468981 197469027 -30055551 + (CA)n Simple_repeat Simple_repeat 2 46 0 1509 173 72 4 chr3 197469227 197469504 -30055074 + AluJo SINE Alu 1 296 -16 200 295 12 40 chr3 197470199 197470293 -30054285 - L2 LINE L2 -9 3304 3175 216 281 130 43 chr3 197470320 197470505 -30054073 - L2 LINE L2 -163 3109 2909 1901 157 0 28 chr3 197470741 197471060 -30053518 + AluJb SINE Alu 1 310 -2 1422 94 5 0 chr3 197471422 197471623 -30052955 - AluSg/x SINE Alu -2 310 109 2677 13 3 0 chr3 197471623 197471929 -30052649 - AluY SINE Alu -4 307 1 488 272 129 29 chr3 197471944 197472323 -30052255 - L1M4 LINE L1 -2416 3730 3314 1202 179 10 86 chr3 197472323 197472437 -30052141 + AluJo SINE Alu 1 122 -180 2219 75 0 47 chr3 197472437 197472755 -30051823 + AluY SINE Alu 6 308 -3 1202 179 10 86 chr3 197472755 197472789 -30051789 + AluJo SINE Alu 122 157 -145 1830 132 0 0 chr3 197472789 197473054 -30051524 + AluSq SINE Alu 1 265 -48 1202 179 10 86 chr3 197473054 197473069 -30051509 + AluJo SINE Alu 157 172 -130 185 83 28 0 chr3 197473069 197473105 -30051473 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1202 179 10 86 chr3 197473105 197473252 -30051326 + AluJo SINE Alu 172 289 -13 734 204 0 19 chr3 197473330 197473487 -30051091 - AluJb SINE Alu -2 310 157 284 225 12 0 chr3 197473507 197473587 -30050991 - L1M4 LINE L1 -2888 3258 3178 755 123 53 6 chr3 197574216 197574386 -29950192 + GA-rich Low_complexity Low_complexity 3 180 0 246 156 0 0 chr3 197574403 197574448 -29950130 + GA-rich Low_complexity Low_complexity 1 45 0 24 67 0 0 chr3 197575185 197575230 -29949348 + AT_rich Low_complexity Low_complexity 1 45 0 212 321 66 66 chr3 197575366 197575609 -29948969 + L2 LINE L2 1997 2239 -1075 458 286 72 116 chr3 197575701 197576201 -29948377 + L2 LINE L2 2243 2720 -594 2356 51 14 3 chr3 197578188 197578484 -29946094 - AluY SINE Alu -12 299 1 949 143 65 6 chr3 197578576 197578744 -29945834 + MER58A DNA MER1_type 47 224 0 357 24 0 0 chr3 197579277 197579319 -29945259 + (GA)n Simple_repeat Simple_repeat 2 43 0 26 30 0 0 chr3 197580340 197580373 -29944205 + AT_rich Low_complexity Low_complexity 1 33 0 442 330 62 89 chr3 197581465 197582108 -29942470 + L2 LINE L2 1776 2401 -913 264 132 0 57 chr3 197582183 197582236 -29942342 + MLT1F1 LTR MaLR 68 117 -450 1195 234 196 14 chr3 197582236 197582731 -29941847 - L1MC4a LINE L1 -165 7643 7059 229 313 121 33 chr3 197582999 197583181 -29941397 - LTR16C LTR ERVL -2 489 292 184 337 133 46 chr3 197583436 197583632 -29940946 + L2 LINE L2 2624 2836 -478 276 304 0 25 chr3 197583855 197583934 -29940644 + L2 LINE L2 3221 3297 -16 29 70 0 0 chr3 197584636 197584693 -29939885 + AT_rich Low_complexity Low_complexity 1 57 0 311 212 45 0 chr3 197584928 197584994 -29939584 - MIR SINE MIR -1 261 193 480 307 0 29 chr3 197585983 197586120 -29938458 + MIR SINE MIR 20 152 -110 204 40 0 0 chr3 197586192 197586217 -29938361 + (T)n Simple_repeat Simple_repeat 1 25 0 215 313 62 0 chr3 197586330 197586410 -29938168 + L3b LINE CR1 1275 1359 -224 225 242 0 76 chr3 197586966 197587032 -29937546 + L2 LINE L2 3249 3309 -4 197 303 101 56 chr3 197588154 197588332 -29936246 + L2 LINE L2 2703 2888 -426 * 287 309 0 12 chr3 197588308 197588392 -29936186 - L2 LINE L2 -2 3270 3188 2228 113 23 55 chr3 197588688 197588871 -29935707 + MLT1B LTR MaLR 1 188 -202 2067 100 31 3 chr3 197588871 197589160 -29935418 + AluSx SINE Alu 1 297 -15 2228 113 23 55 chr3 197589160 197589375 -29935203 + MLT1B LTR MaLR 188 386 -4 293 287 24 18 chr3 197589856 197590020 -29934558 + G-rich Low_complexity Low_complexity 5 169 0 197 33 33 0 chr3 197591282 197591312 -29933266 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2135 125 0 10 chr3 197591329 197591642 -29932936 + AluSq SINE Alu 1 310 -3 371 171 13 0 chr3 197592604 197592680 -29931898 + (CATA)n Simple_repeat Simple_repeat 3 79 0 665 72 0 10 chr3 197592912 197593009 -29931569 + (GGAA)n Simple_repeat Simple_repeat 4 99 0 453 207 136 50 chr3 197593606 197593746 -29930832 + MIR SINE MIR 58 209 -53 2211 120 5 102 chr3 197594644 197595076 -29929502 + MLT1B LTR MaLR 1 390 0 3604 184 8 0 chr3 197596931 197597835 -29926743 + L1MA7 LINE L1 4705 5616 -675 3162 185 55 12 chr3 197597848 197598452 -29926126 + L1M2 LINE L1 10 639 -6210 1554 184 61 6 chr3 197598469 197598795 -29925783 + L1MA7 LINE L1 5948 6291 0 315 245 43 53 chr3 197598808 197598996 -29925582 + L1ME4a LINE L1 5865 6050 -71 26 50 0 0 chr3 197599023 197599063 -29925515 + AT_rich Low_complexity Low_complexity 1 40 0 589 212 130 11 chr3 197599275 197599459 -29925119 + L1MD1 LINE L1 2016 2221 -4319 6793 227 93 10 chr3 197599464 197601981 -29922597 + L1MD1 LINE L1 2240 4967 -1573 2034 199 41 26 chr3 197601985 197602838 -29921740 + L1MD1 LINE L1 5128 5983 -653 2472 69 0 3 chr3 197602838 197603143 -29921435 + AluY SINE Alu 4 307 -4 1102 118 29 37 chr3 197603153 197603356 -29921222 + LTR8 LTR ERV1 310 484 -207 2597 172 65 56 chr3 197603361 197603723 -29920855 + L1MD1 LINE L1 5987 6359 -277 1838 166 7 3 chr3 197603723 197604030 -29920548 + AluSx SINE Alu 1 308 -4 2597 172 65 56 chr3 197604030 197604308 -29920270 + L1MD1 LINE L1 6359 6633 -3 1952 188 22 6 chr3 197604377 197604733 -29919845 - MLT1A1 LTR MaLR -3 362 1 504 316 0 51 chr3 197605722 197605918 -29918660 - MIR3 SINE MIR -8 200 15 426 367 29 54 chr3 197606129 197606369 -29918209 - L2 LINE L2 -47 3225 2992 300 292 170 12 chr3 197607283 197607454 -29917124 - MIR SINE MIR -15 247 50 2316 132 22 0 chr3 197608727 197609083 -29915495 + THE1B LTR MaLR 1 364 0 926 213 61 35 chr3 197610188 197610222 -29914356 + MLT1J2 LTR MaLR 1 33 -417 2483 85 0 0 chr3 197610222 197610528 -29914050 - AluSc SINE Alu -3 306 1 926 213 61 35 chr3 197610528 197610723 -29913855 + MLT1J2 LTR MaLR 33 236 -214 225 207 69 35 chr3 197610808 197610866 -29913712 + MLT1I LTR MaLR 316 375 -34 26 0 0 0 chr3 197611672 197611698 -29912880 + AT_rich Low_complexity Low_complexity 1 26 0 1289 221 87 37 chr3 197612262 197613697 -29910881 - L1MC4 LINE L1 -1191 6617 5327 487 286 23 51 chr3 197613743 197614096 -29910482 - L1MC4 LINE L1 -904 5242 4900 371 333 83 44 chr3 197615471 197615651 -29908927 - MIR SINE MIR -55 207 21 387 248 94 27 chr3 197615895 197615923 -29908655 + MIR SINE MIR 75 100 -162 1319 156 37 136 chr3 197615923 197616328 -29908250 - MLT1A1 LTR MaLR 0 365 1 387 248 94 27 chr3 197616328 197616448 -29908130 + MIR SINE MIR 100 233 -29 766 307 49 24 chr3 197616500 197616988 -29907590 + L1ME LINE L1 5316 5792 -329 1685 141 146 29 chr3 197617496 197617879 -29906699 + MSTA LTR MaLR 1 428 0 1956 89 0 114 chr3 197618060 197618384 -29906194 - AluSc SINE Alu -9 300 14 23 0 0 0 chr3 197618575 197618598 -29905980 + AT_rich Low_complexity Low_complexity 1 23 0 357 307 69 23 chr3 197619671 197619889 -29904689 - Tigger1 DNA MER2_type -1250 1168 941 610 255 36 36 chr3 197621935 197622131 -29902447 - L1ME3A LINE L1 -198 5976 5781 * 12756 160 81 25 chr3 197622128 197622161 -29902417 - L1M1 LINE L1 -4593 2972 2942 1893 154 6 10 chr3 197622161 197622473 -29902105 + AluJo SINE Alu 1 311 -1 12756 160 81 25 chr3 197622473 197622969 -29901609 - L1M1 LINE L1 -4623 2942 2475 2997 50 5 0 chr3 197622969 197623345 -29901233 - L1PA8 LINE L1 0 6172 5795 12756 160 81 25 chr3 197623345 197625613 -29898965 - L1M1 LINE L1 -5090 2475 1 5143 147 43 6 chr3 197625914 197626865 -29897713 - L1MB3 LINE L1 -2 6181 5195 1916 123 0 0 chr3 197627166 197627427 -29897151 - AluSx SINE Alu -8 304 44 309 305 146 1 chr3 197627490 197627686 -29896892 - L1MEc LINE L1 -1955 4174 3951 872 294 91 31 chr3 197627698 197628641 -29895937 - L1MEc LINE L1 -2947 3182 2183 293 242 150 33 chr3 197628702 197628822 -29895756 + L2 LINE L2 3170 3303 -10 501 306 103 31 chr3 197629225 197629905 -29894673 - L1MEc LINE L1 -4657 1653 925 2026 116 17 7 chr3 197629922 197630224 -29894354 - AluSx SINE Alu -7 305 1 384 87 38 0 chr3 197630235 197630339 -29894239 - L1PA13 LINE L1 -8 6155 5946 361 238 74 16 chr3 197630374 197630496 -29894082 - L1MEc LINE L1 -5251 868 740 2499 232 74 69 chr3 197630496 197631267 -29893311 - MER21B LTR ERV1 -81 782 8 868 223 79 10 chr3 197631380 197631582 -29892996 - MER21B-int LTR ERV1 -2554 1637 1422 4485 177 14 24 chr3 197631587 197632371 -29892207 - LTR39 LTR ERV1 -7 776 1 5575 239 60 23 chr3 197632373 197633747 -29890831 - MER21B-int LTR ERV1 -2767 1424 1 1046 237 102 25 chr3 197633775 197633943 -29890635 - MER21B LTR ERV1 -62 801 602 1819 134 0 11 chr3 197633943 197634246 -29890332 + AluSx SINE Alu 26 325 0 1046 237 102 25 chr3 197634246 197634350 -29890228 - MER21B LTR ERV1 -261 602 507 847 246 37 35 chr3 197634781 197635182 -29889396 - MER21B LTR ERV1 -424 439 1 679 293 77 26 chr3 197635186 197635459 -29889119 - L1MEc LINE L1 -5376 743 457 631 238 53 13 chr3 197635906 197636057 -29888521 - FAM SINE Alu -18 157 1 21 36 0 0 chr3 197637149 197637177 -29887401 + AT_rich Low_complexity Low_complexity 1 28 0 237 167 21 21 chr3 197637436 197637484 -29887094 - MLT1K LTR MaLR -10 578 531 225 299 0 30 chr3 197637516 197637583 -29886995 - MLT1K LTR MaLR -68 520 456 298 284 57 57 chr3 197637776 197637917 -29886661 - MLT1K LTR MaLR -317 271 131 1702 185 0 28 chr3 197639693 197640012 -29884566 + AluJo SINE Alu 1 310 -2 2086 92 25 3 chr3 197640117 197640399 -29884179 + AluSq SINE Alu 1 288 -25 2263 73 21 0 chr3 197640399 197640687 -29883891 + AluY SINE Alu 11 304 -7 429 373 40 45 chr3 197641030 197641652 -29882926 - L2 LINE L2 -606 2708 2090 21 0 0 0 chr3 197642002 197642023 -29882555 + AT_rich Low_complexity Low_complexity 1 21 0 2220 119 3 3 chr3 197643037 197643347 -29881231 + AluSx SINE Alu 1 310 -2 354 327 120 5 chr3 197643522 197643739 -29880839 + MIR SINE MIR 13 254 -8 257 350 10 10 chr3 197644484 197644584 -29879994 + MIR SINE MIR 45 144 -118 725 278 40 14 chr3 197644658 197644881 -29879697 + MIR SINE MIR 32 260 -2 2236 121 0 0 chr3 197645120 197645417 -29879161 + AluSq SINE Alu 1 297 -16 224 348 0 0 chr3 197647481 197647570 -29877008 + C-rich Low_complexity Low_complexity 1 89 0 222 333 11 33 chr3 197647499 197647682 -29876896 + CT-rich Low_complexity Low_complexity 2 180 0 * 2060 144 3 6 chr3 197648713 197649026 -29875552 - AluSx SINE Alu 0 312 1 382 276 26 51 chr3 197649778 197649934 -29874644 + MIR SINE MIR 69 220 -42 776 158 20 0 chr3 197650483 197650629 -29873949 + BC200 scRNA scRNA 21 169 -31 336 220 88 25 chr3 197651406 197651524 -29873054 - MIR SINE MIR -61 147 64 2076 126 0 52 chr3 197651672 197651998 -29872580 + AluSx SINE Alu 1 309 -3 185 249 73 136 chr3 197654002 197654179 -29870399 - MER5A DNA MER1_type -2 187 22 440 339 65 0 chr3 197654795 197654963 -29869615 - MER91A DNA MER1_type -3 193 15 2056 153 84 10 chr3 197658818 197659222 -29865356 - Tigger2a DNA MER2_type 0 434 1 227 330 21 43 chr3 197659251 197659345 -29865233 - L2 LINE L2 -10 3262 3171 302 182 15 0 chr3 197660148 197660214 -29864364 + (TA)n Simple_repeat Simple_repeat 2 68 0 204 238 19 6 chr3 197663566 197663671 -29860907 + MIR SINE MIR 28 197 -65 382 288 108 0 chr3 197663758 197663897 -29860681 - MIR SINE MIR -79 183 30 446 197 8 53 chr3 197664020 197664152 -29860426 + Charlie5 DNA MER1_type 2 127 -2485 * 1995 155 29 0 chr3 197664149 197664529 -29860049 + Charlie5 DNA MER1_type 2234 2624 0 2370 114 10 36 chr3 197664708 197665093 -29859485 - THE1C LTR MaLR 0 375 1 1178 217 14 41 chr3 197666643 197666933 -29857645 - MLT1A1 LTR MaLR -83 282 1 2060 136 51 20 chr3 197667197 197667550 -29857028 - THE1B LTR MaLR 0 364 1 11913 81 9 4 chr3 197667550 197669122 -29855456 - THE1B-int LTR MaLR 0 1580 1 2162 135 48 22 chr3 197669122 197669477 -29855101 - THE1B LTR MaLR 0 364 1 210 326 86 46 chr3 197669643 197669818 -29854760 + L2 LINE L2 3119 3300 -13 251 325 26 34 chr3 197669924 197670041 -29854537 + MIR SINE MIR 81 196 -66 445 297 84 60 chr3 197670313 197670646 -29853932 - L3 LINE CR1 -28 1549 1209 22 0 0 0 chr3 197670951 197670973 -29853605 + AT_rich Low_complexity Low_complexity 1 22 0 338 280 32 0 chr3 197671492 197671585 -29852993 + U13 snRNA snRNA 7 102 -2 240 248 0 89 chr3 197674029 197674130 -29850448 - Charlie4 DNA MER1_type -794 1167 1076 381 321 80 27 chr3 197674388 197674650 -29849928 - Charlie4 DNA MER1_type -1130 831 556 582 197 41 16 chr3 197675061 197675183 -29849395 - L2 LINE L2 0 3313 3189 318 205 66 131 chr3 197676617 197676739 -29847839 - MLT1H LTR MaLR -2 547 434 395 252 98 16 chr3 197676836 197676959 -29847619 - MLT1H LTR MaLR -306 243 111 357 139 0 83 chr3 197678607 197678674 -29845904 + FRAM SINE Alu 26 86 -80 3377 126 11 0 chr3 197678674 197679144 -29845434 - MER1A DNA MER1_type 0 529 55 447 196 0 37 chr3 197679156 197679263 -29845315 + FAM SINE Alu 83 185 0 870 70 0 2 chr3 197680853 197681108 -29843470 + AluSc SINE Alu 1 309 0 408 337 49 19 chr3 197681436 197681641 -29842937 + MIR SINE MIR 2 212 -50 25 0 0 0 chr3 197682038 197682063 -29842515 + AT_rich Low_complexity Low_complexity 1 25 0 194 301 14 14 chr3 197682687 197682760 -29841818 + MIR SINE MIR 150 222 -40 816 269 137 38 chr3 197682894 197683082 -29841496 - MLT1J2 LTR MaLR -1 449 281 2161 117 3 3 chr3 197683082 197683389 -29841189 - AluSx SINE Alu -5 307 1 816 269 137 38 chr3 197683389 197683572 -29841006 - MLT1J2 LTR MaLR -169 281 41 2034 124 7 0 chr3 197683667 197683957 -29840621 + AluSq SINE Alu 1 292 -21 241 274 0 0 chr3 197683993 197684044 -29840534 + MIR3 SINE MIR 144 194 -14 644 181 23 6 chr3 197684229 197684400 -29840178 + GA-rich Low_complexity Low_complexity 4 177 0 246 341 89 0 chr3 197684809 197684944 -29839634 + L2 LINE L2 3167 3313 0 2877 118 39 7 chr3 197685303 197685718 -29838860 + MSTA LTR MaLR 1 428 0 200 258 169 0 chr3 197685738 197685827 -29838751 - MIR SINE MIR 0 262 159 1429 204 37 71 chr3 197685831 197686209 -29838369 + MLT1A2 LTR MaLR 6 370 -4 364 278 22 111 chr3 197686211 197686364 -29838214 - MIR SINE MIR -96 166 30 1724 156 31 38 chr3 197686364 197686652 -29837926 - AluJo SINE Alu -26 286 1 364 278 22 111 chr3 197686652 197686678 -29837900 - MIR SINE MIR -232 30 3 417 198 178 10 chr3 197686707 197686808 -29837770 + MER63 DNA MER1_type 5 748 -314 1331 186 37 61 chr3 197686881 197687177 -29837401 - AluJo SINE Alu -23 289 1 311 262 0 0 chr3 197687180 197687241 -29837337 + MER63 DNA MER1_type 1001 1061 0 208 302 0 0 chr3 197687288 197687341 -29837237 + L2 LINE L2 3193 3245 -68 205 261 159 29 chr3 197687358 197687496 -29837082 - MIR SINE MIR -13 249 94 524 304 0 0 chr3 197688325 197688463 -29836115 - MER91B DNA MER1_type -33 157 20 443 270 72 20 chr3 197689583 197689735 -29834843 - MIR SINE MIR 0 262 103 3920 118 93 97 chr3 197689737 197691110 -29833468 + pTR5 LTR ERV1 748 2438 0 198 0 0 0 chr3 197691539 197691561 -29833017 + (A)n Simple_repeat Simple_repeat 1 22 0 557 351 55 18 chr3 197691831 197692161 -29832417 - L2 LINE L2 -429 2885 2544 1540 225 101 48 chr3 197693418 197693894 -29830684 - MLT1D LTR MaLR -4 501 1 195 317 110 0 chr3 197695532 197695614 -29828964 - L3 LINE CR1 -56 1521 1431 1158 188 23 23 chr3 197695618 197695836 -29828742 - MER58A DNA MER1_type -6 218 1 200 303 141 92 chr3 197695975 197696160 -29828418 + L2 LINE L2 3079 3272 0 994 177 113 68 chr3 197696301 197696611 -29827967 + MER33 DNA MER1_type 1 324 0 1259 262 144 3 chr3 197696614 197696961 -29827617 - MSTD LTR MaLR 0 396 1 2224 121 0 0 chr3 197697340 197697646 -29826932 - AluSx SINE Alu -6 306 1 395 248 26 65 chr3 197698167 197698320 -29826258 + L2 LINE L2 3167 3313 0 344 298 143 19 chr3 197700225 197700386 -29824192 + MIR SINE MIR 32 212 -50 2363 107 0 0 chr3 197700902 197701211 -29823367 + AluSc SINE Alu 1 309 0 469 340 24 56 chr3 197702104 197702445 -29822133 - L2 LINE L2 -609 2705 2376 1250 241 106 82 chr3 197702466 197703148 -29821430 - LTR50 LTR ERVL -8 787 2 202 343 161 21 chr3 197703194 197703436 -29821142 - L2 LINE L2 -1026 2288 2013 779 245 80 5 chr3 197703483 197703683 -29820895 + MER58A DNA MER1_type 1 215 -9 2489 74 0 0 chr3 197703684 197703983 -29820595 + AluSg SINE Alu 1 299 -11 678 238 89 98 chr3 197704259 197704788 -29819790 - MLT1F1 LTR MaLR -7 560 37 25 0 0 0 chr3 197705213 197705238 -29819340 + AT_rich Low_complexity Low_complexity 1 25 0 587 261 279 43 chr3 197705909 197706198 -29818380 - L2 LINE L2 0 3313 3093 2375 95 0 7 chr3 197706198 197706502 -29818076 + AluSq SINE Alu 1 302 -11 587 261 279 43 chr3 197706502 197706606 -29817972 - L2 LINE L2 -220 3093 2827 514 259 51 32 chr3 197706611 197706769 -29817809 - L2 LINE L2 -606 2708 2548 343 271 229 0 chr3 197706831 197706971 -29817607 + MIR3 SINE MIR 16 187 -21 384 296 226 10 chr3 197707011 197707116 -29817462 - MIR SINE MIR -1 261 180 1690 89 0 9 chr3 197707116 197707341 -29817237 + AluY SINE Alu 84 306 -5 384 296 226 10 chr3 197707341 197707434 -29817144 - MIR SINE MIR -82 180 20 257 247 43 21 chr3 197709878 197709971 -29814607 - MIR SINE MIR -44 218 124 321 282 0 0 chr3 197711655 197711733 -29812845 + L1MDa LINE L1 19 96 -6444 2171 110 0 13 chr3 197711733 197712032 -29812546 + AluSx SINE Alu 1 295 -17 4545 199 122 44 chr3 197712033 197712575 -29812003 + L1MDa LINE L1 471 969 -5571 2025 152 0 3 chr3 197712575 197712871 -29811707 + AluSx SINE Alu 1 295 -17 4545 199 122 44 chr3 197712871 197713135 -29811443 + L1MDa LINE L1 969 1211 -5329 2142 113 10 7 chr3 197713135 197713444 -29811134 + AluSg SINE Alu 1 310 0 4545 199 122 44 chr3 197713444 197713868 -29810710 + L1MDa LINE L1 1211 1873 -4667 336 208 186 109 chr3 197713980 197714254 -29810324 - L1M2 LINE L1 -5844 1005 711 808 304 15 55 chr3 197714380 197714784 -29809794 + L2 LINE L2 1712 2099 -1215 1358 258 76 17 chr3 197714799 197715361 -29809217 + L2 LINE L2 2593 3193 -120 885 234 5 54 chr3 197715366 197715571 -29809007 + MER58A DNA MER1_type 4 198 -26 681 161 17 8 chr3 197715571 197715689 -29808889 + L2 LINE L2 3190 3308 -5 26 30 0 0 chr3 197715704 197715737 -29808841 + AT_rich Low_complexity Low_complexity 1 33 0 381 297 184 37 chr3 197716576 197716903 -29807675 - L3b LINE CR1 -31 1552 1178 303 49 0 0 chr3 197717320 197717361 -29807217 + (CA)n Simple_repeat Simple_repeat 2 42 0 913 227 56 0 chr3 197717652 197717850 -29806728 - MER3 DNA MER1_type 0 209 1 185 315 19 0 chr3 197717883 197717937 -29806641 + L2 LINE L2 3209 3263 -9 210 287 400 7 chr3 197718437 197718587 -29805991 - MIR SINE MIR 0 262 54 239 293 77 72 chr3 197720085 197720266 -29804312 - L2 LINE L2 -238 3034 2853 247 257 56 33 chr3 197721948 197722116 -29802462 - MER20B DNA MER1_type -4 215 42 1953 112 22 4 chr3 197722239 197722506 -29802072 - AluSq SINE Alu -24 289 18 1080 251 12 8 chr3 197723049 197723304 -29801274 + MIR SINE MIR 1 256 -6 198 245 149 32 chr3 197723699 197723793 -29800785 + L2 LINE L2 3168 3272 0 418 230 26 44 chr3 197723796 197723909 -29800669 + L2 LINE L2 3197 3307 -6 195 323 0 0 chr3 197724169 197724234 -29800344 - L2 LINE L2 -1 3271 3207 436 221 87 71 chr3 197724654 197724781 -29799797 - MER94 DNA DNA -2 132 4 238 365 61 9 chr3 197724889 197725004 -29799574 + L2 LINE L2 3143 3263 -9 27 29 0 0 chr3 197725861 197725895 -29798683 + AT_rich Low_complexity Low_complexity 1 34 0 213 39 0 0 chr3 197728114 197728140 -29796438 + (TG)n Simple_repeat Simple_repeat 1 26 0 21 36 0 0 chr3 197728185 197728213 -29796365 + AT_rich Low_complexity Low_complexity 1 28 0 230 301 80 18 chr3 197728303 197728466 -29796112 - L1ME LINE L1 -208 5913 5741 446 288 77 68 chr3 197728503 197728854 -29795724 - L2 LINE L2 -957 2357 2004 959 321 51 102 chr3 197729346 197730079 -29794499 - L1MC4a LINE L1 0 7808 7138 27 29 0 0 chr3 197730079 197730113 -29794465 + AT_rich Low_complexity Low_complexity 1 34 0 7106 197 56 29 chr3 197730113 197733024 -29791554 - L1MC1 LINE L1 -6 6327 3330 2183 106 0 0 chr3 197733024 197733342 -29791236 - AluSx SINE Alu 0 318 1 7106 197 56 29 chr3 197733342 197733549 -29791029 - L1MC1 LINE L1 -3003 3330 3130 279 253 7 0 chr3 197733561 197733653 -29790925 - L1MCa LINE L1 -3525 2901 2805 1494 202 39 36 chr3 197733653 197733985 -29790593 + MLT1A1 LTR MaLR 33 365 0 738 119 0 0 chr3 197733987 197734096 -29790482 - L1MCa LINE L1 -4815 1611 1503 841 230 21 49 chr3 197734412 197734699 -29789879 + LTR4 LTR ERV1 318 596 0 21202 147 13 4 chr3 197734699 197736582 -29787996 - L1P4 LINE L1 -570 5596 3732 207 0 0 0 chr3 197736582 197736605 -29787973 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 21202 147 13 4 chr3 197736605 197738603 -29785975 - L1P4 LINE L1 -2434 3732 1679 696 35 0 0 chr3 197738607 197738694 -29785884 + (TTTC)n Simple_repeat Simple_repeat 2 88 0 2080 133 0 0 chr3 197738696 197738989 -29785589 - AluSc SINE Alu -14 295 3 214 370 25 8 chr3 197739214 197739333 -29785245 + L3 LINE CR1 1101 1221 -356 273 237 53 13 chr3 197739400 197739476 -29785102 - L2 LINE L2 0 3313 3235 295 324 190 9 chr3 197739503 197739719 -29784859 + L3 LINE CR1 1311 1565 -12 1097 171 36 5 chr3 197740669 197740862 -29783716 + MSTA LTR MaLR 1 199 -229 3021 195 46 16 chr3 197740965 197741758 -29782820 - Ricksha DNA DNA -1124 922 9 2288 89 7 0 chr3 197741868 197742160 -29782418 - AluSg SINE Alu -15 295 2 5177 225 16 30 chr3 197743707 197744821 -29779757 - MER52A LTR ERV1 -113 1642 545 2138 79 10 17 chr3 197744922 197745214 -29779364 + AluY SINE Alu 22 311 0 355 219 35 34 chr3 197746043 197746164 -29778414 + AluJ/FLAM SINE Alu 1 99 -203 1236 128 11 0 chr3 197746300 197746488 -29778090 - AluSx SINE Alu -2 310 121 878 129 7 29 chr3 197746566 197746705 -29777873 - AluSx SINE Alu -177 136 1 1969 141 3 7 chr3 197746735 197747033 -29777545 - AluSq SINE Alu -16 297 1 6081 161 39 44 chr3 197748383 197749652 -29774926 - L1MCa LINE L1 -5157 1269 7 1050 219 14 31 chr3 197749637 197749925 -29774653 - L1MD3 LINE L1 -804 7191 6909 * 337 333 77 80 chr3 197749976 197750312 -29774266 + L1ME LINE L1 180 514 -5605 459 311 58 47 chr3 197750313 197751150 -29773428 + L1ME LINE L1 4623 5476 -671 370 337 98 0 chr3 197751199 197751383 -29773195 + MIR SINE MIR 55 256 -6 588 271 11 67 chr3 197751541 197751797 -29772781 - MIR SINE MIR -17 245 6 237 375 62 18 chr3 197752330 197752442 -29772136 - L3 LINE CR1 -81 1496 1380 513 266 24 0 chr3 197752475 197752599 -29771979 - MIR SINE MIR -17 245 119 187 349 28 18 chr3 197752647 197752756 -29771822 - L3 LINE CR1 -298 1279 1170 2369 90 0 10 chr3 197752778 197753090 -29771488 + AluSc SINE Alu 1 309 0 23 0 0 0 chr3 197756331 197756354 -29768224 + AT_rich Low_complexity Low_complexity 1 23 0 24 85 0 0 chr3 197756414 197756473 -29768105 + AT_rich Low_complexity Low_complexity 1 59 0 980 300 59 25 chr3 197756884 197757440 -29767138 + L1PA12 LINE L1 10 584 -6997 1507 182 125 30 chr3 197757456 197757903 -29766675 - MER51A LTR ERV1 0 634 1 317 317 105 23 chr3 197757987 197758173 -29766405 + L1PA12 LINE L1 1698 1867 -5714 417 20 0 0 chr3 197758173 197758223 -29766355 + (TG)n Simple_repeat Simple_repeat 2 51 0 317 317 105 23 chr3 197758223 197758398 -29766180 + L1PA12 LINE L1 1867 2080 -5501 254 227 93 13 chr3 197758552 197758627 -29765951 + L1M2 LINE L1 786 866 -5983 7560 184 37 32 chr3 197758646 197759207 -29765371 + L1PA16 LINE L1 3452 4009 -2157 273 132 0 0 chr3 197759207 197759245 -29765333 - 5S rRNA rRNA -83 38 1 7560 184 37 32 chr3 197759245 197759533 -29765045 + L1PA16 LINE L1 4009 4294 -1872 1537 184 0 80 chr3 197759533 197759870 -29764708 - AluJo SINE Alu -1 311 2 7560 184 37 32 chr3 197759870 197761117 -29763461 + L1PA16 LINE L1 4294 5596 -570 841 230 21 49 chr3 197761117 197761404 -29763174 - LTR4 LTR ERV1 0 596 318 336 218 140 56 chr3 197761585 197761764 -29762814 - LTR4 LTR ERV1 -396 200 7 3554 138 7 3 chr3 197761779 197762343 -29762235 + L1PA16 LINE L1 5593 6158 -8 384 276 28 117 chr3 197762397 197762499 -29762079 + MER102a DNA MER1_type 136 211 -1206 602 197 15 0 chr3 197762499 197762631 -29761947 - MER94 DNA DNA 0 134 1 384 276 28 117 chr3 197762631 197762742 -29761836 + MER102a DNA MER1_type 211 330 0 2262 119 0 0 chr3 197762792 197763104 -29761474 - AluSq SINE Alu 0 313 2 306 0 0 0 chr3 197763603 197763637 -29760941 + (TG)n Simple_repeat Simple_repeat 2 35 0 1904 146 10 7 chr3 197764476 197764770 -29759808 + AluSx SINE Alu 1 295 -17 364 252 107 0 chr3 197765247 197765350 -29759228 + MER63 DNA MER1_type 1 740 -96 281 241 0 38 chr3 197765357 197765436 -29759142 + MER63 DNA MER1_type 979 1054 -8 2256 87 0 3 chr3 197766016 197766302 -29758276 - AluSp SINE Alu -12 301 17 22 56 0 0 chr3 197767618 197767654 -29756924 + AT_rich Low_complexity Low_complexity 1 36 0 2264 85 17 3 chr3 197767750 197768045 -29756533 + AluSq SINE Alu 1 299 -14 243 301 24 12 chr3 197768385 197768468 -29756110 - L2 LINE L2 -20 3252 3169 315 0 0 0 chr3 197769459 197769494 -29755084 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 378 42 0 0 chr3 197770858 197770906 -29753672 + (TG)n Simple_repeat Simple_repeat 1 48 0 372 272 18 24 chr3 197771269 197771438 -29753140 - L1M4 LINE L1 -1522 4624 4457 245 315 14 0 chr3 197771545 197771688 -29752890 + (TA)n Simple_repeat Simple_repeat 1 145 0 408 224 248 32 chr3 197771688 197771813 -29752765 + MER5A DNA MER1_type 37 188 -1 22 0 0 0 chr3 197771892 197771914 -29752664 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 197772171 197772192 -29752386 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 197772360 197772388 -29752190 + AT_rich Low_complexity Low_complexity 1 28 0 577 290 113 30 chr3 197772424 197772921 -29751657 - L1M4 LINE L1 -2902 3244 2707 270 246 88 9 chr3 197773178 197773192 -29751386 - L1MA10 LINE L1 0 6334 6321 4034 224 52 24 chr3 197773192 197775183 -29749395 - L1ME1 LINE L1 -4 6162 4114 561 147 0 0 chr3 197775707 197775802 -29748776 + (TCCC)n Simple_repeat Simple_repeat 3 97 0 1099 343 186 19 chr3 197775954 197776936 -29747642 + L3 LINE CR1 398 1543 -34 1418 238 77 83 chr3 197776965 197777483 -29747095 - LTR40a LTR ERVL 0 519 5 477 204 0 0 chr3 197777495 197777583 -29746995 - AluJb SINE Alu -14 298 211 501 97 0 0 chr3 197777773 197777845 -29746733 + (TCTA)n Simple_repeat Simple_repeat 4 75 0 5026 176 12 6 chr3 197777918 197778969 -29745609 + L1MB2 LINE L1 5111 6168 -3 363 306 0 19 chr3 197780499 197780607 -29743971 + L2 LINE L2 3203 3308 -5 26 0 0 0 chr3 197780883 197780909 -29743669 + AT_rich Low_complexity Low_complexity 1 26 0 2036 128 0 0 chr3 197781441 197781723 -29742855 - AluSx SINE Alu -30 282 1 195 306 32 0 chr3 197781803 197781865 -29742713 - L2 LINE L2 -4 3309 3246 5374 191 99 26 chr3 197783428 197784750 -29739828 + Charlie1a DNA MER1_type 2 1420 -35 27 29 0 0 chr3 197784755 197784789 -29739789 + AT_rich Low_complexity Low_complexity 1 34 0 286 342 38 22 chr3 197786557 197786741 -29737837 - MIR SINE MIR -50 212 26 242 167 0 42 chr3 197787797 197787845 -29736733 + CT-rich Low_complexity Low_complexity 3 48 0 1447 47 21 0 chr3 197789490 197789681 -29734897 + L1PA4 LINE L1 5959 6153 -2 25 0 0 0 chr3 197789923 197789948 -29734630 + AT_rich Low_complexity Low_complexity 1 25 0 1688 120 7 29 chr3 197789948 197790222 -29734356 - AluSx SINE Alu -24 288 21 242 218 103 0 chr3 197790384 197790462 -29734116 - MIR SINE MIR -123 139 54 662 187 2 42 chr3 197790462 197790647 -29733931 - L1MEc LINE L1 -3228 2987 2809 * 1816 256 87 119 chr3 197790643 197793183 -29731395 - L1MEc LINE L1 -3756 2459 67 268 319 0 32 chr3 197793294 197793388 -29731190 - MIR SINE MIR -170 92 2 325 295 95 63 chr3 197793412 197793602 -29730976 + L2 LINE L2 3118 3313 0 180 0 0 0 chr3 197793711 197793731 -29730847 + (TAAAAA)n Simple_repeat Simple_repeat 5 24 0 22 0 0 0 chr3 197793797 197793819 -29730759 + AT_rich Low_complexity Low_complexity 1 22 0 30 27 0 0 chr3 197796977 197797014 -29727564 + AT_rich Low_complexity Low_complexity 1 37 0 207 186 23 0 chr3 197798138 197798181 -29726397 - L2 LINE L2 -1 3312 3269 25 31 0 0 chr3 197798309 197798341 -29726237 + AT_rich Low_complexity Low_complexity 1 32 0 2122 113 3 0 chr3 197798915 197799217 -29725361 - AluY SINE Alu -8 303 1 978 110 0 7 chr3 197799217 197799353 -29725225 - AluSq/x SINE Alu -177 135 1 2002 128 3 7 chr3 197799530 197799820 -29724758 - AluSx SINE Alu -16 296 8 1727 132 0 69 chr3 197800790 197801117 -29723461 + AluSx SINE Alu 1 306 0 21 0 0 0 chr3 197801284 197801305 -29723273 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr3 197801780 197801815 -29722763 + AT_rich Low_complexity Low_complexity 1 35 0 460 215 37 22 chr3 197801821 197801956 -29722622 + L1MD2 LINE L1 2527 2663 -3483 3553 89 8 2 chr3 197801978 197802483 -29722095 + L1PA8A LINE L1 5620 6127 -4 736 190 31 6 chr3 197802495 197802658 -29721920 + L1MD2 LINE L1 2645 2811 -3335 * 3535 189 136 40 chr3 197802655 197803635 -29720943 + L1MD2 LINE L1 5283 6356 -3 414 299 43 43 chr3 197803969 197804138 -29720440 - HAL1b LINE L1 -657 691 520 2287 93 0 10 chr3 197804138 197804450 -29720128 + AluSx SINE Alu 2 310 -2 414 299 43 43 chr3 197804450 197804491 -29720087 - HAL1b LINE L1 -827 521 481 2245 90 0 6 chr3 197804817 197805129 -29719449 - AluY SINE Alu -1 310 1 203 213 43 0 chr3 197805354 197805401 -29719177 - MIR SINE MIR -200 62 14 824 208 71 18 chr3 197805450 197805676 -29718902 + MER5C DNA MER1_type 73 310 -14 377 260 89 108 chr3 197805855 197806347 -29718231 - L1ME4a LINE L1 -204 5917 5435 33 25 0 0 chr3 197806460 197806500 -29718078 + AT_rich Low_complexity Low_complexity 1 40 0 574 289 62 57 chr3 197806671 197807058 -29717520 - L1ME4a LINE L1 -2685 3461 3073 251 164 14 55 chr3 197807125 197807232 -29717346 + (CTTAT)n Simple_repeat Simple_repeat 1 102 0 270 0 0 0 chr3 197807549 197807579 -29716999 + (T)n Simple_repeat Simple_repeat 1 30 0 2227 107 0 0 chr3 197807690 197807989 -29716589 + AluSq SINE Alu 1 299 -14 24 0 0 0 chr3 197808048 197808072 -29716506 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 197808133 197808156 -29716422 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr3 197809760 197809782 -29714796 + (T)n Simple_repeat Simple_repeat 1 22 0 351 326 107 37 chr3 197810145 197810387 -29714191 - MIR SINE MIR -2 260 2 1940 127 0 26 chr3 197810431 197810738 -29713840 - MER1B DNA MER1_type 0 339 41 955 178 11 0 chr3 197811565 197811739 -29712839 - MER57A LTR ERV1 -3 400 225 2245 89 3 32 chr3 197811739 197812055 -29712523 + AluSx SINE Alu 1 307 -5 286 340 9 0 chr3 197812848 197812954 -29711624 + MER103 DNA DNA 58 164 -2 9393 208 43 20 chr3 197813148 197814898 -29709680 + L1M1 LINE L1 16 1724 -5841 2630 143 25 7 chr3 197814898 197815332 -29709246 + L1PA15 LINE L1 5724 6165 0 9393 208 43 20 chr3 197815332 197816263 -29708315 + L1M1 LINE L1 1724 3451 -4114 13097 166 16 17 chr3 197816266 197816543 -29708035 + L1M1 LINE L1 4268 4544 -3118 2576 48 0 0 chr3 197816543 197816853 -29707725 + AluY SINE Alu 1 310 -1 13097 166 16 17 chr3 197816853 197817827 -29706751 + L1M1 LINE L1 4544 5518 -2144 2093 146 0 0 chr3 197817827 197818128 -29706450 + AluSx SINE Alu 1 301 -11 13097 166 16 17 chr3 197818128 197819533 -29705045 + L1M1 LINE L1 5518 6919 -743 4583 134 21 41 chr3 197819509 197820102 -29704476 + L1PA16 LINE L1 6789 7392 -193 * 2075 146 30 28 chr3 197820102 197820465 -29704113 + THE1B LTR MaLR 1 364 0 11281 95 14 6 chr3 197820465 197822032 -29702546 + THE1B-int LTR MaLR 1 1580 0 2192 112 38 44 chr3 197822032 197822398 -29702180 + THE1B LTR MaLR 1 364 0 4583 134 21 41 chr3 197822398 197822471 -29702107 + L1PA16 LINE L1 7390 7463 -122 1772 135 19 0 chr3 197822471 197822737 -29701841 + AluSx SINE Alu 42 312 0 4583 134 21 41 chr3 197822737 197822880 -29701698 + L1PA16 LINE L1 7463 7585 0 4350 142 28 23 chr3 197822956 197823793 -29700785 + L1MA4 LINE L1 5460 6300 0 23 0 0 0 chr3 197824104 197824127 -29700451 + AT_rich Low_complexity Low_complexity 1 23 0 22 56 0 0 chr3 197824342 197824378 -29700200 + AT_rich Low_complexity Low_complexity 1 36 0 204 405 13 0 chr3 197824788 197824867 -29699711 - MIR SINE MIR -118 144 65 588 248 114 49 chr3 197825745 197825991 -29698587 - MIR SINE MIR 0 262 1 23 54 0 0 chr3 197827295 197827332 -29697246 + AT_rich Low_complexity Low_complexity 1 37 0 22 0 0 0 chr3 197827567 197827589 -29696989 + AT_rich Low_complexity Low_complexity 1 22 0 335 171 146 0 chr3 197827650 197827732 -29696846 + MER53 DNA DNA 1 94 -95 300 273 77 38 chr3 197829508 197829717 -29694861 - L1M4 LINE L1 -2055 4091 3875 1908 263 69 62 chr3 197829859 197830539 -29694039 - MER115 DNA AcHobo 0 693 9 510 238 49 21 chr3 197830579 197830722 -29693856 + L2 LINE L2 3166 3312 -1 22672 126 10 10 chr3 197831209 197833689 -29690889 - L1PA10 LINE L1 -11 6157 3676 207 0 0 0 chr3 197833689 197833712 -29690866 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 22672 126 10 10 chr3 197833712 197835710 -29688868 - L1PA10 LINE L1 -2492 3676 1679 2149 112 0 0 chr3 197835714 197836096 -29688482 - AluSc SINE Alu 0 384 3 214 370 25 8 chr3 197836320 197836439 -29688139 + L3 LINE CR1 1101 1221 -356 273 237 53 13 chr3 197836506 197836582 -29687996 - L2 LINE L2 0 3313 3235 295 324 190 9 chr3 197836609 197836825 -29687753 + L3 LINE CR1 1311 1565 -12 2333 159 47 2 chr3 197837775 197838184 -29686394 + MSTA LTR MaLR 1 427 -1 193 256 0 0 chr3 197838261 197838300 -29686278 - MIR SINE MIR -113 149 111 1845 226 48 23 chr3 197839554 197839996 -29684582 + LTR40b LTR ERVL 10 462 0 1746 196 115 31 chr3 197840053 197840514 -29684064 + MLT1D LTR MaLR 1 626 0 333 0 0 0 chr3 197840756 197840793 -29683785 + (CA)n Simple_repeat Simple_repeat 2 38 0 365 330 45 0 chr3 197841146 197841258 -29683320 + L2 LINE L2 3150 3266 -6 728 262 74 18 chr3 197842745 197842974 -29681604 + MIR SINE MIR 11 252 -10 27 0 0 0 chr3 197843812 197843839 -29680739 + AT_rich Low_complexity Low_complexity 1 27 0 535 277 84 61 chr3 197844080 197844607 -29679971 + L1ME LINE L1 5287 5828 -334 13892 148 29 35 chr3 197844687 197846657 -29677921 + Tigger7 DNA MER2_type 1 1954 -533 225 119 0 0 chr3 197846657 197846699 -29677879 + (CCAA)n Simple_repeat Simple_repeat 2 43 0 13892 148 29 35 chr3 197846699 197847230 -29677348 + Tigger7 DNA MER2_type 1954 2487 0 22 70 0 0 chr3 197848100 197848143 -29676435 + AT_rich Low_complexity Low_complexity 1 43 0 432 0 0 0 chr3 197848375 197848423 -29676155 + (CA)n Simple_repeat Simple_repeat 1 48 0 237 345 62 23 chr3 197849023 197849200 -29675378 + L2 LINE L2 256 439 -2875 259 328 176 17 chr3 197849249 197849852 -29674726 + L2 LINE L2 582 1280 -2034 1954 183 68 24 chr3 197850023 197850433 -29674145 - MSTA LTR MaLR 0 428 1 8911 174 21 12 chr3 197850433 197852067 -29672511 - MSTA-int LTR MaLR 0 1651 3 1697 183 151 5 chr3 197852068 197852440 -29672138 - MSTA LTR MaLR 0 428 3 486 188 0 0 chr3 197853455 197853556 -29671022 + CT-rich Low_complexity Low_complexity 4 104 0 414 187 6 139 chr3 197853620 197853786 -29670792 + MER112 DNA MER1_type 91 234 -26 313 269 129 0 chr3 197854617 197854710 -29669868 + MIR SINE MIR 139 243 -19 24 0 0 0 chr3 197856067 197856091 -29668487 + AT_rich Low_complexity Low_complexity 1 24 0 379 210 43 105 chr3 197856188 197856350 -29668228 + MER5B DNA MER1_type 2 153 -25 1720 136 72 19 chr3 197856355 197856719 -29667859 + Tigger3(Golem) DNA MER2_type 2 3029 0 268 303 56 22 chr3 197857514 197857603 -29666975 + L2 LINE L2 3150 3241 -31 23 0 0 0 chr3 197858112 197858135 -29666443 + AT_rich Low_complexity Low_complexity 1 23 0 227 268 122 0 chr3 197858396 197858478 -29666100 - MIR SINE MIR -150 112 21 432 282 160 6 chr3 197858599 197858755 -29665823 + MER5A DNA MER1_type 7 186 -3 * 571 269 88 38 chr3 197858740 197858946 -29665632 + MIR SINE MIR 1 222 -40 1521 105 0 0 chr3 197858946 197859155 -29665423 + AluSg/x SINE Alu 102 310 -2 571 269 88 38 chr3 197859155 197859186 -29665392 + MIR SINE MIR 222 250 -12 292 310 239 0 chr3 197860034 197860147 -29664431 - MER5A DNA MER1_type -1 188 49 788 239 49 46 chr3 197860155 197860407 -29664171 + MIR SINE MIR 16 262 0 2458 86 0 0 chr3 197861616 197861918 -29662660 + AluSx SINE Alu 2 303 -9 1244 258 185 5 chr3 197861952 197862378 -29662200 + MLT1J LTR MaLR 1 503 -8 223 266 16 16 chr3 197862776 197862840 -29661738 + GA-rich Low_complexity Low_complexity 1 64 0 1716 199 7 3 chr3 197863605 197863907 -29660671 - AluJo SINE Alu -7 305 3 219 287 172 66 chr3 197863930 197864052 -29660526 + L2 LINE L2 3127 3261 -11 358 331 50 7 chr3 197866314 197866453 -29658125 - MIR SINE MIR -55 207 63 2117 57 0 14 chr3 197866776 197867057 -29657521 + L1PA8 LINE L1 5896 6172 0 1927 124 6 64 chr3 197867502 197867832 -29656746 + AluSq SINE Alu 1 311 -2 230 217 0 58 chr3 197868407 197868476 -29656102 + CT-rich Low_complexity Low_complexity 1 65 0 23 0 0 0 chr3 197868921 197868944 -29655634 + AT_rich Low_complexity Low_complexity 1 23 0 223 255 0 0 chr3 197869355 197869406 -29655172 + MIR SINE MIR 211 261 -1 302 301 37 37 chr3 197870352 197870488 -29654090 - L2 LINE L2 0 3272 3137 212 290 40 65 chr3 197870513 197870637 -29653941 + L2 LINE L2 3149 3269 -3 263 272 165 19 chr3 197870941 197871099 -29653479 - MIR SINE MIR -62 200 20 2331 106 0 0 chr3 197871318 197871620 -29652958 - AluSq SINE Alu -11 302 1 336 330 93 28 chr3 197871912 197872094 -29652484 + MIR SINE MIR 12 205 -57 240 286 135 8 chr3 197872148 197872274 -29652304 + L2 LINE L2 1511 1652 -1662 1387 301 156 36 chr3 197872349 197873590 -29650988 + L2 LINE L2 1901 3313 0 245 371 57 8 chr3 197874366 197874490 -29650088 - MIR3 SINE MIR -7 201 72 22 0 0 0 chr3 197874769 197874791 -29649787 + AT_rich Low_complexity Low_complexity 1 22 0 2631 233 50 23 chr3 197874941 197875668 -29648910 - L1MC4 LINE L1 -137 7905 7160 31 0 0 0 chr3 197875729 197875760 -29648818 + AT_rich Low_complexity Low_complexity 1 31 0 381 236 151 0 chr3 197876161 197876267 -29648311 - MER5A DNA MER1_type -13 176 55 239 344 11 22 chr3 197876797 197876887 -29647691 - L2 LINE L2 0 3272 3184 455 360 30 17 chr3 197876972 197877205 -29647373 + MIR SINE MIR 7 242 -20 27 81 0 0 chr3 197877286 197877348 -29647230 + AT_rich Low_complexity Low_complexity 1 62 0 2469 82 3 0 chr3 197877797 197878102 -29646476 + AluSc SINE Alu 3 308 -1 391 286 64 22 chr3 197879696 197880114 -29644464 + L1ME3A LINE L1 818 1289 -4982 664 276 50 50 chr3 197880216 197880847 -29643731 + L1ME3A LINE L1 1877 2462 -3753 840 223 85 0 chr3 197880847 197881035 -29643543 + LTR50 LTR ERVL 1 204 -591 268 261 46 0 chr3 197881216 197881281 -29643297 + LTR50 LTR ERVL 494 561 -234 551 255 14 89 chr3 197881334 197881695 -29642883 + L1ME3A LINE L1 2498 2831 -3384 598 261 56 21 chr3 197881698 197881932 -29642646 + L1ME3A LINE L1 4717 4958 -1257 428 183 201 64 chr3 197881933 197882072 -29642506 + MSTB2 LTR MaLR 1 168 -289 1061 119 0 0 chr3 197882077 197882220 -29642358 + AluSg/x SINE Alu 157 299 -13 949 208 21 54 chr3 197882220 197882461 -29642117 + MSTB2 LTR MaLR 225 457 0 2728 248 87 17 chr3 197882473 197883653 -29640925 + L1ME3A LINE L1 4964 6234 -5 29 70 0 0 chr3 197884017 197884074 -29640504 + AT_rich Low_complexity Low_complexity 1 57 0 1848 100 0 0 chr3 197884074 197884344 -29640234 - L1MA2 LINE L1 0 6304 6035 561 15 0 0 chr3 197885536 197885602 -29638976 + (CA)n Simple_repeat Simple_repeat 2 67 0 370 256 182 0 chr3 197886773 197886894 -29637684 + MIR SINE MIR 120 262 0 207 225 0 0 chr3 197886895 197886935 -29637643 + (TTA)n Simple_repeat Simple_repeat 2 41 0 2013 131 3 0 chr3 197887421 197887739 -29636839 + AluSx SINE Alu 1 319 0 201 74 0 0 chr3 197888167 197888194 -29636384 + (TTCA)n Simple_repeat Simple_repeat 4 30 0 198 299 184 11 chr3 197888195 197888282 -29636296 - L2 LINE L2 -11 3261 3160 317 217 138 14 chr3 197889088 197889226 -29635352 - L1ME4a LINE L1 -6 6115 5961 255 169 77 23 chr3 197889417 197889547 -29635031 + (TA)n Simple_repeat Simple_repeat 1 137 0 664 285 60 4 chr3 197889708 197889943 -29634635 - L1ME3A LINE L1 -6 6164 5917 2983 218 61 26 chr3 197890273 197891842 -29632736 - L1ME1 LINE L1 -32 6117 4495 11467 133 42 17 chr3 197891842 197893752 -29630826 - Tigger1 DNA MER2_type 0 2418 460 4223 211 42 11 chr3 197893752 197894643 -29629935 + L1MA1 LINE L1 12 929 -6636 1871 192 86 0 chr3 197894638 197895023 -29629555 - L1M1 LINE L1 -6165 1400 983 * 15270 153 23 15 chr3 197895020 197899654 -29624924 + L1MA1 LINE L1 2978 7721 0 2295 196 37 11 chr3 197899671 197900134 -29624444 - Tigger1 DNA MER2_type -1943 475 1 2212 247 29 21 chr3 197900162 197900827 -29623751 - L1ME1 LINE L1 -1678 4451 3782 382 276 140 42 chr3 197900838 197901102 -29623476 - L1ME1 LINE L1 -2687 3442 3153 395 258 39 0 chr3 197901128 197901283 -29623295 - L1ME1 LINE L1 -3091 3038 2878 682 247 0 20 chr3 197901373 197901421 -29623157 + MER5A DNA MER1_type 1 48 -141 1747 191 46 75 chr3 197901421 197901664 -29622914 + MLT1C LTR MaLR 1 225 -242 1624 206 17 0 chr3 197901664 197901960 -29622618 - AluJb SINE Alu -11 301 1 1747 191 46 75 chr3 197901960 197902197 -29622381 + MLT1C LTR MaLR 225 467 0 682 247 0 20 chr3 197902197 197902294 -29622284 + MER5A DNA MER1_type 48 143 -46 580 320 41 29 chr3 197902297 197902638 -29621940 - L1ME1 LINE L1 -3312 2817 2473 264 100 0 0 chr3 197902841 197902881 -29621697 + (TTCC)n Simple_repeat Simple_repeat 3 42 0 2553 92 94 12 chr3 197902934 197903348 -29621230 - LTR7 LTR ERV1 -2 448 1 2484 82 48 13 chr3 197903348 197903725 -29620853 - HERVH LTR ERV1 0 7713 7324 1472 123 0 0 chr3 197903725 197903945 -29620633 - HERVH LTR ERV1 -1894 5819 5600 7743 118 14 11 chr3 197903946 197905133 -29619445 - HERVH LTR ERV1 -2564 5149 3953 5731 103 11 3 chr3 197905163 197906011 -29618567 - HERVH LTR ERV1 -3720 3993 3140 * 14114 119 39 31 chr3 197906007 197908841 -29615737 - HERVH LTR ERV1 -4728 2985 1 2529 96 91 19 chr3 197908843 197909261 -29615317 - LTR7 LTR ERV1 -2 448 1 393 270 14 27 chr3 197909460 197909608 -29614970 - L1ME1 LINE L1 -5933 186 41 272 261 115 30 chr3 197909648 197909882 -29614696 - L1ME LINE L1 -229 5892 5639 207 342 84 32 chr3 197910279 197910434 -29614144 - MIR SINE MIR -10 252 90 341 271 103 9 chr3 197910710 197910817 -29613761 + MER91C DNA MER1_type 6 122 -18 765 240 65 30 chr3 197912838 197913038 -29611540 + MER63A DNA MER1_type 1 207 -3 1452 179 45 153 chr3 197913503 197913967 -29610611 - MLT2B1 LTR ERVL 0 414 1 212 305 84 32 chr3 197914658 197914753 -29609825 + MIR3 SINE MIR 60 159 -49 886 188 16 0 chr3 197914919 197915105 -29609473 + MER53 DNA DNA 1 189 0 994 320 155 60 chr3 197916132 197916554 -29608024 - L2 LINE L2 -154 3118 2737 2164 104 7 0 chr3 197916554 197916851 -29607727 + AluSg SINE Alu 1 299 -11 994 320 155 60 chr3 197916851 197918295 -29606283 - L2 LINE L2 -535 2737 1090 4491 77 5 0 chr3 197919071 197919668 -29604910 - L1PA7 LINE L1 -7 6147 5548 938 19 0 0 chr3 197920505 197920613 -29603965 + L1PA5 LINE L1 6038 6145 -9 35 0 0 0 chr3 197920613 197920648 -29603930 + AT_rich Low_complexity Low_complexity 1 35 0 217 288 182 0 chr3 197920923 197921025 -29603553 - MIR SINE MIR -66 142 33 186 189 0 0 chr3 197921229 197921266 -29603312 + GA-rich Low_complexity Low_complexity 4 40 0 181 316 0 0 chr3 197921375 197921432 -29603146 + MIR SINE MIR 53 109 -99 6438 102 17 11 chr3 197922071 197923047 -29601531 - L1MA2 LINE L1 0 6304 5323 21 57 0 0 chr3 197923051 197923086 -29601492 + AT_rich Low_complexity Low_complexity 1 35 0 1452 275 81 31 chr3 197924081 197924597 -29599981 + MLT1F LTR MaLR 1 542 0 954 234 155 14 chr3 197925733 197926011 -29598567 + HsTC2 DNA Tc2 4 320 -1578 535 207 92 6 chr3 197926007 197926181 -29598397 + HsTC2 DNA Tc2 1703 1891 -7 * 425 255 188 54 chr3 197926404 197926718 -29597860 + MLT1J LTR MaLR 102 457 -54 2003 243 91 22 chr3 197926875 197927340 -29597238 - L1MCc LINE L1 -2921 4020 3589 661 260 100 5 chr3 197927340 197927540 -29597038 - MER20 DNA MER1_type 0 219 1 2003 243 91 22 chr3 197927540 197928146 -29596432 - L1MCc LINE L1 -3352 3589 2915 469 296 92 34 chr3 197928153 197928447 -29596131 - L1MCc LINE L1 -4250 2872 2562 690 292 29 24 chr3 197928590 197928702 -29595876 - L1MCc LINE L1 -4889 1534 1424 1821 118 11 0 chr3 197928702 197928964 -29595614 - AluSq SINE Alu -9 304 40 690 292 29 24 chr3 197928964 197929353 -29595225 - L1MCc LINE L1 -4999 1424 1168 480 48 0 0 chr3 197929753 197929816 -29594762 + (TG)n Simple_repeat Simple_repeat 1 63 0 2096 118 29 56 chr3 197929876 197930250 -29594328 + THE1B LTR MaLR 1 364 0 10388 89 65 12 chr3 197930250 197931751 -29592827 + THE1B-int LTR MaLR 1 1580 0 1866 140 56 36 chr3 197931751 197932108 -29592470 + THE1B LTR MaLR 1 364 0 24 0 0 0 chr3 197932622 197932646 -29591932 + AT_rich Low_complexity Low_complexity 1 24 0 2095 255 68 46 chr3 197934088 197935045 -29589533 + Zaphod DNA AcHobo 13 990 -3041 922 247 54 14 chr3 197935033 197935402 -29589176 + Zaphod DNA AcHobo 3582 3965 -66 * 226 264 69 0 chr3 197935428 197935500 -29589078 + Zaphod DNA AcHobo 3948 4024 -7 310 269 121 27 chr3 197935521 197935670 -29588908 + L1MC5 LINE L1 7615 7777 -184 310 358 43 34 chr3 197935873 197936080 -29588498 + MIR SINE MIR 51 259 -3 433 242 40 0 chr3 197936419 197936518 -29588060 + MSTD LTR MaLR 1 103 -325 899 196 112 62 chr3 197936785 197937045 -29587533 + MSTD LTR MaLR 124 396 0 325 264 84 58 chr3 197939264 197939419 -29585159 + L3 LINE CR1 437 595 -982 335 257 215 7 chr3 197939538 197939682 -29584896 - MIR SINE MIR -42 220 47 408 247 0 0 chr3 197939704 197939797 -29584781 - MIR SINE MIR -57 205 113 434 247 41 31 chr3 197939927 197940088 -29584490 + MIR SINE MIR 30 190 -62 26 30 0 0 chr3 197940689 197940722 -29583856 + AT_rich Low_complexity Low_complexity 1 33 0 187 250 276 13 chr3 197941246 197941322 -29583256 + MIR SINE MIR 163 258 -4 231 282 47 35 chr3 197941785 197941870 -29582708 - MIR SINE MIR -52 210 125 245 320 165 0 chr3 197942091 197942188 -29582390 - L2 LINE L2 -22 3291 3179 195 259 0 0 chr3 197942190 197942248 -29582330 + GA-rich Low_complexity Low_complexity 3 60 0 2119 134 48 28 chr3 197942384 197942741 -29581837 + THE1B LTR MaLR 1 364 0 8377 110 7 1 chr3 197942741 197943891 -29580687 + THE1B-int LTR MaLR 1 1157 -423 1023 251 45 107 chr3 197943891 197944294 -29580284 + MLT2B1 LTR ERVL 63 440 -80 493 243 0 0 chr3 197944460 197944571 -29580007 - MER31-int LTR ERV1 -467 4469 4359 226 230 138 23 chr3 197944627 197944714 -29579864 - LTR37A LTR ERV1 -326 100 4 3194 197 17 59 chr3 197944737 197944853 -29579725 - MER31-int LTR ERV1 -727 4209 4090 2254 131 91 13 chr3 197944853 197945250 -29579328 - MSTA LTR MaLR 0 428 1 3194 197 17 59 chr3 197945250 197945883 -29578695 - MER31-int LTR ERV1 -846 4090 3491 239 192 0 0 chr3 197945891 197945943 -29578635 - MSTB1 LTR MaLR 0 432 381 573 122 78 0 chr3 197945943 197946033 -29578545 - MSTB-int LTR MaLR -1553 98 2 2165 197 36 2 chr3 197946034 197946446 -29578132 - MSTB LTR MaLR 0 426 1 7764 176 30 70 chr3 197946446 197948124 -29576454 - MSTB-int LTR MaLR -40 1611 1 1984 180 61 24 chr3 197948124 197948535 -29576043 - MSTB LTR MaLR 0 426 1 3018 207 19 40 chr3 197948547 197949239 -29575339 - MER31-int LTR ERV1 -3929 1007 331 329 274 49 0 chr3 197949320 197949422 -29575156 - MER31-int LTR ERV1 -4630 306 200 739 229 0 19 chr3 197949486 197949643 -29574935 - MER31-int LTR ERV1 -4763 173 20 415 189 0 147 chr3 197949643 197949786 -29574792 - MER31B LTR ERV1 -344 122 1 706 11 43 0 chr3 197949890 197949983 -29574595 + (TTTC)n Simple_repeat Simple_repeat 2 98 0 1900 177 128 13 chr3 197950065 197950449 -29574129 - MSTA LTR MaLR 0 428 1 9118 178 23 5 chr3 197950449 197952070 -29572508 - MSTA-int LTR MaLR 0 1651 1 1300 176 4 9 chr3 197952072 197952305 -29572273 - MSTB LTR MaLR -9 419 188 21 0 0 0 chr3 197952507 197952528 -29572050 + AT_rich Low_complexity Low_complexity 1 21 0 583 241 112 0 chr3 197954693 197954857 -29569721 - MER5A DNA MER1_type 0 189 5 578 282 26 26 chr3 197954904 197955099 -29569479 + LTR33 LTR ERVL 1 195 -326 603 325 30 26 chr3 197955712 197955980 -29568598 + LTR33 LTR ERVL 246 514 -7 902 300 29 63 chr3 197956093 197956672 -29567906 + L2 LINE L2 2674 3232 -81 242 305 19 48 chr3 197957005 197957110 -29567468 - L3 LINE CR1 -30 1547 1446 512 56 14 0 chr3 197959523 197959595 -29564983 + (TCTA)n Simple_repeat Simple_repeat 2 74 0 903 200 70 5 chr3 197959700 197959885 -29564693 - AluJo SINE Alu -115 197 1 2449 59 7 0 chr3 197959909 197960197 -29564381 + AluY SINE Alu 1 290 -21 4626 181 62 12 chr3 197960606 197961636 -29562942 + Tigger6a DNA MER2_type 1 1082 -1 38 68 0 0 chr3 197961640 197961713 -29562865 + AT_rich Low_complexity Low_complexity 1 73 0 4018 208 47 4 chr3 197962310 197963127 -29561451 - L1PBa LINE L1 -6011 852 1 14733 162 21 5 chr3 197963169 197965584 -29558994 - L1M1 LINE L1 -5101 2464 12 1661 167 23 9 chr3 197965581 197965929 -29558649 - L1 LINE L1 -1653 4675 4323 * 5939 207 27 16 chr3 197965930 197969549 -29555029 - L1 LINE L1 -2585 3743 5 510 348 68 20 chr3 197969605 197969959 -29554619 + L1 LINE L1 2359 2729 -3417 1124 217 52 119 chr3 197970158 197970728 -29553850 - MER39 LTR ERV1 0 707 8 27 0 0 0 chr3 197970785 197970812 -29553766 + AT_rich Low_complexity Low_complexity 1 27 0 307 279 27 18 chr3 197971103 197971214 -29553364 + L1 LINE L1 3389 3500 -2646 2773 221 43 7 chr3 197971216 197971819 -29552759 + MER82 DNA MER2_type 1 625 -28 29 47 0 0 chr3 197971819 197971862 -29552716 + AT_rich Low_complexity Low_complexity 1 43 0 630 122 0 0 chr3 197971916 197972014 -29552564 + (TC)n Simple_repeat Simple_repeat 2 99 0 919 103 0 0 chr3 197972015 197972131 -29552447 - AluSq/x SINE Alu -196 116 1 332 248 217 8 chr3 197972193 197972322 -29552256 + L1 LINE L1 3648 3803 -2343 1275 210 40 33 chr3 197972365 197972637 -29551941 - MER21B LTR ERV1 -2 861 588 4005 144 33 26 chr3 197972643 197973331 -29551247 - MER50 LTR ERV1 -41 693 1 2537 209 70 30 chr3 197973332 197973901 -29550677 - MER21B LTR ERV1 -271 592 1 307 141 63 12 chr3 197973984 197974086 -29550492 + L1P LINE L1 4601 4710 -1436 992 209 5 0 chr3 197974137 197974324 -29550254 - MER5A DNA MER1_type 0 189 2 713 173 0 31 chr3 197974939 197975066 -29549512 - FLAM_A SINE Alu -9 124 2 13313 125 35 71 chr3 197975187 197977692 -29546886 - Tigger1 DNA MER2_type -1 2417 1 3842 151 55 13 chr3 197978138 197978852 -29545726 - Tigger3(Golem) DNA MER2_type -2 3027 2284 272 276 0 0 chr3 197978866 197978924 -29545654 - Tigger3(Golem) DNA MER2_type -2954 75 18 24 32 0 0 chr3 197979056 197979087 -29545491 + AT_rich Low_complexity Low_complexity 1 31 0 278 326 91 80 chr3 197980264 197980528 -29544050 - L2 LINE L2 -14 3258 2992 2151 69 0 117 chr3 197980824 197981174 -29543404 + AluSc SINE Alu 1 309 0 444 118 0 0 chr3 197981189 197981257 -29543321 + (CA)n Simple_repeat Simple_repeat 1 68 0 198 0 0 0 chr3 197981257 197981279 -29543299 + (TA)n Simple_repeat Simple_repeat 1 22 0 1561 197 13 23 chr3 197981279 197981583 -29542995 - AluJo SINE Alu -11 301 1 261 0 0 0 chr3 197982552 197982581 -29541997 + (TA)n Simple_repeat Simple_repeat 2 30 0 608 263 119 33 chr3 197982597 197983017 -29541561 - L1ME1 LINE L1 -285 5881 5433 415 219 190 58 chr3 197983110 197983421 -29541157 + MLT1G1 LTR MaLR 204 595 0 657 268 88 44 chr3 197983454 197984211 -29540367 - L1ME1 LINE L1 -986 5160 4370 241 304 18 0 chr3 197984218 197984266 -29540312 - L1MA10 LINE L1 -10 6324 6277 1155 267 91 37 chr3 197984266 197984337 -29540241 - L1ME2 LINE L1 -51 6096 6030 2273 92 7 0 chr3 197984337 197984629 -29539949 - AluY SINE Alu -17 294 1 1155 267 91 37 chr3 197984629 197985096 -29539482 - L1ME2 LINE L1 -117 6030 5529 602 301 100 7 chr3 197985097 197985406 -29539172 - L1ME2 LINE L1 -2748 3381 3044 315 145 305 53 chr3 197985419 197985550 -29539028 + LTR41 LTR ERVL 15 178 -595 2674 19 9 3 chr3 197987289 197987636 -29536942 - L1PA3 LINE L1 0 6155 5829 689 169 76 17 chr3 197987656 197987828 -29536750 + MLT1A2 LTR MaLR 189 370 -4 390 347 43 38 chr3 197987845 197988237 -29536341 - L1ME2 LINE L1 -3528 2601 2208 323 299 67 79 chr3 197988298 197988639 -29535939 - L1ME2 LINE L1 -4188 2122 1786 330 314 57 60 chr3 197988745 197988993 -29535585 - L1ME2 LINE L1 -4773 1537 1291 461 243 51 79 chr3 197988999 197989115 -29535463 - L1ME2 LINE L1 -4881 1238 1120 1651 37 0 0 chr3 197989115 197989304 -29535274 - AluY SINE Alu -2 309 121 461 243 51 79 chr3 197989304 197989541 -29535037 - L1ME2 LINE L1 -4999 1120 895 207 158 24 61 chr3 197989588 197989670 -29534908 + A-rich Low_complexity Low_complexity 4 82 0 430 295 33 0 chr3 197989685 197989868 -29534710 - L1ME2 LINE L1 -5280 839 651 333 263 14 106 chr3 197989992 197990285 -29534293 - L1ME2 LINE L1 -5835 284 19 231 328 17 107 chr3 197990824 197991001 -29533577 + L2 LINE L2 3110 3270 -2 367 300 106 55 chr3 197991590 197992007 -29532571 - MLT1K LTR MaLR -3 585 148 313 146 0 18 chr3 197992121 197992176 -29532402 - THE1C LTR MaLR 0 428 375 274 192 0 0 chr3 197992325 197992377 -29532201 - L1MCa LINE L1 -5500 926 875 5503 101 15 17 chr3 197992383 197992741 -29531837 - L1PB1 LINE L1 -1 6150 5793 480 35 0 0 chr3 197992741 197992799 -29531779 + (TG)n Simple_repeat Simple_repeat 2 59 0 5503 101 15 17 chr3 197992799 197993331 -29531247 - L1PB1 LINE L1 -358 5793 5262 18370 143 54 61 chr3 197993333 197997483 -29527095 - HUERS-P1 LTR ERV1 -2143 4120 1 714 133 6 127 chr3 197997483 197997648 -29526930 - LTR8 LTR ERV1 0 691 547 * 1548 153 52 18 chr3 197997644 197997971 -29526607 - THE1C LTR MaLR -37 338 1 279 390 42 8 chr3 197998543 197998661 -29525917 + L2 LINE L2 3133 3254 -18 235 227 112 58 chr3 197999413 197999655 -29524923 + MER113 DNA MER1_type? 3 257 -264 2323 152 36 10 chr3 197999655 198000070 -29524508 - MSTA LTR MaLR 0 428 3 8454 180 8 29 chr3 198000072 198000901 -29523677 - MSTA-int LTR MaLR 0 1651 807 2310 93 7 7 chr3 198000901 198001202 -29523376 - AluY SINE Alu -10 301 1 8454 180 8 29 chr3 198001202 198001597 -29522981 - MSTA-int LTR MaLR -844 807 406 7662 25 0 0 chr3 198001597 198002777 -29521801 - L1PA3 LINE L1 -10 6145 4966 8454 180 8 29 chr3 198002777 198003236 -29521342 - MSTA-int LTR MaLR -1245 406 1 2411 147 47 0 chr3 198003236 198003645 -29520933 - MSTA LTR MaLR 0 428 1 349 266 77 7 chr3 198003687 198003830 -29520748 + MER113 DNA MER1_type? 304 456 -65 2689 135 19 2 chr3 198003832 198004253 -29520325 + MSTA LTR MaLR 1 428 0 225 132 0 0 chr3 198004390 198004428 -29520150 + (TATG)n Simple_repeat Simple_repeat 1 38 0 3795 164 25 42 chr3 198004647 198005487 -29519091 + L1MA4 LINE L1 5469 6294 -6 554 324 113 29 chr3 198005595 198006197 -29518381 + L2 LINE L2 2638 3296 -17 213 197 0 0 chr3 198006199 198006260 -29518318 + (TA)n Simple_repeat Simple_repeat 1 61 0 2398 94 0 0 chr3 198006912 198007211 -29517367 - AluSq SINE Alu -14 299 1 273 201 115 50 chr3 198007347 198007486 -29517092 + MLT1J LTR MaLR 1 148 -363 269 222 11 44 chr3 198007677 198007767 -29516811 + MLT1J2 LTR MaLR 361 447 -3 187 184 53 0 chr3 198007837 198007875 -29516703 - MIR3 SINE MIR -50 158 119 928 246 4 22 chr3 198007964 198008192 -29516386 + MER58A DNA MER1_type 1 224 0 1831 213 71 97 chr3 198008270 198009016 -29515562 - LTR8A LTR ERV1 0 727 1 22 0 0 0 chr3 198011094 198011116 -29513462 + AT_rich Low_complexity Low_complexity 1 22 0 593 172 123 12 chr3 198011735 198011898 -29512680 + MER69 DNA AcHobo 1 181 -2345 313 284 63 0 chr3 198012583 198012678 -29511900 + MIR SINE MIR 48 148 -114 1076 204 82 12 chr3 198012679 198013120 -29511458 - LTR48B LTR ERV1 0 644 129 251 305 0 34 chr3 198013105 198013223 -29511355 - MER34 LTR ERV1 -428 114 1 * 24 0 0 0 chr3 198013409 198013433 -29511145 + AT_rich Low_complexity Low_complexity 1 24 0 210 71 0 0 chr3 198013548 198013576 -29511002 + (CA)n Simple_repeat Simple_repeat 1 28 0 3060 217 20 47 chr3 198014169 198014678 -29509900 - LTR39 LTR ERV1 0 783 303 2335 111 0 0 chr3 198014678 198014985 -29509593 - AluSg SINE Alu 0 310 4 3060 217 20 47 chr3 198014985 198015280 -29509298 - LTR39 LTR ERV1 -480 303 1 2691 182 44 2 chr3 198015370 198015919 -29508659 - LTR29 LTR ERV1 0 622 51 2460 179 31 27 chr3 198017667 198018220 -29506358 + LTR60 LTR ERV1 1 555 -31 461 201 34 47 chr3 198018092 198018241 -29506337 + TAR1 Satellite telomeric 39 185 -1926 * 2130 151 9 27 chr3 198018673 198019136 -29505442 + LTR23-int LTR ERV1 5303 5810 -632 299 198 40 40 chr3 198019129 198019230 -29505348 + LTR23-int LTR ERV1 4794 4894 -229 * 2483 60 0 3 chr3 198019282 198019582 -29504996 - AluY SINE Alu -11 300 2 1658 120 48 14 chr3 198019663 198019955 -29504623 + LTR23 LTR ERV1 4 305 -132 6257 177 19 6 chr3 198019957 198021293 -29503285 - L1PB4 LINE L1 -1068 5078 3725 1830 149 27 4 chr3 198021284 198021753 -29502825 + L1PB4 LINE L1 5089 5575 -581 * 2391 100 29 83 chr3 198021756 198022100 -29502478 + MER48 LTR ERV1 1 320 -78 2160 99 3 0 chr3 198022100 198022409 -29502169 + AluY SINE Alu 1 310 0 2391 100 29 83 chr3 198022409 198022484 -29502094 + MER48 LTR ERV1 320 398 0 18375 109 19 15 chr3 198022484 198026193 -29498385 + HERVH48 LTR ERV1 1 3820 -2834 1807 73 4 8 chr3 198026197 198026458 -29498120 + HERVH48 LTR ERV1 2957 3216 -3438 * 18760 95 28 3 chr3 198026453 198029217 -29495361 + HERVH48 LTR ERV1 3822 6654 0 1100 86 1 0 chr3 198029217 198029405 -29495173 + MER48 LTR ERV1 1 168 -219 1859 94 4 0 chr3 198029421 198029675 -29494903 + MER48 LTR ERV1 132 386 -1 3426 145 12 5 chr3 198029675 198030254 -29494324 + L1PB4 LINE L1 5573 6155 -1 456 175 150 0 chr3 198030327 198030447 -29494131 + LTR23 LTR ERV1 300 437 0 863 273 98 31 chr3 198032199 198032370 -29492208 + L1MDb LINE L1 783 941 -5465 2395 75 3 3 chr3 198032370 198032678 -29491900 + AluY SINE Alu 1 308 -3 863 273 98 31 chr3 198032678 198033038 -29491540 + L1MDb LINE L1 941 1313 -5093 * 936 262 87 43 chr3 198033022 198033427 -29491151 + L1MDb LINE L1 3131 3574 -2832 1659 185 0 35 chr3 198033427 198033570 -29491008 + AluJb SINE Alu 1 147 -165 2223 96 10 0 chr3 198033570 198033873 -29490705 + AluY SINE Alu 1 306 -5 1659 185 0 35 chr3 198033873 198034074 -29490504 + AluJb SINE Alu 147 312 0 936 262 87 43 chr3 198034074 198034291 -29490287 + L1MDb LINE L1 3574 3780 -2626 1294 99 71 9 chr3 198034291 198034503 -29490075 + AluY SINE Alu 70 294 -17 345 100 0 0 chr3 198034503 198034553 -29490025 + (GA)n Simple_repeat Simple_repeat 1 50 0 180 0 0 0 chr3 198034786 198034806 -29489772 + (CA)n Simple_repeat Simple_repeat 1 20 0 423 0 0 0 chr3 198035010 198035057 -29489521 + (CA)n Simple_repeat Simple_repeat 1 47 0 765 237 96 27 chr3 198035965 198036184 -29488394 - MIR SINE MIR -14 248 15 1864 222 97 9 chr3 198036937 198037401 -29487177 - MLT1D LTR MaLR 0 505 1 1165 168 9 113 chr3 198037724 198038051 -29486527 - AluJo SINE Alu -8 294 2 291 353 113 23 chr3 198038970 198039103 -29485475 - L2 LINE L2 -6 3266 3122 187 267 44 0 chr3 198039739 198039784 -29484794 + MER5B DNA MER1_type 131 177 -1 1485 229 118 13 chr3 198039979 198040447 -29484131 + L1MC4 LINE L1 7525 8041 -1 31 0 0 0 chr3 198040481 198040512 -29484066 + AT_rich Low_complexity Low_complexity 1 31 0 812 167 8 0 chr3 198040516 198040648 -29483930 + FLAM_C SINE Alu 1 133 -10 615 267 144 20 chr3 198040648 198040989 -29483589 + HAL1b LINE L1 819 1201 -147 27 62 0 0 chr3 198041118 198041166 -29483412 + AT_rich Low_complexity Low_complexity 1 48 0 15172 191 35 10 chr3 198041434 198048018 -29476560 - L1PB1 LINE L1 -35 6832 6 279 303 84 108 chr3 198049262 198049976 -29474602 - L2 LINE L2 -556 2758 2062 2017 218 39 81 chr3 198052518 198053159 -29471419 - L1ME3A LINE L1 0 6170 5557 650 208 0 8 chr3 198053185 198053315 -29471263 - AluJb SINE Alu -183 129 1 1187 102 0 0 chr3 198053324 198053490 -29471088 - AluY SINE Alu -10 301 136 423 259 42 14 chr3 198053846 198053989 -29470589 - MIR SINE MIR -108 154 8 579 365 74 8 chr3 198054992 198055343 -29469235 + L3 LINE CR1 583 956 -621 522 354 117 45 chr3 198057428 198058101 -29466477 - L3 LINE CR1 -1 1576 855 28 48 0 0 chr3 198058776 198058818 -29465760 + AT_rich Low_complexity Low_complexity 1 42 0 223 312 248 16 chr3 198059869 198059994 -29464584 - MIR SINE MIR -101 161 8 180 0 0 0 chr3 198060032 198060052 -29464526 + (TAAAAA)n Simple_repeat Simple_repeat 6 25 0 545 250 0 0 chr3 198060214 198060346 -29464232 + MER94 DNA DNA 1 132 -2 258 164 55 27 chr3 198060480 198060553 -29464025 - MLT1H LTR MaLR 0 549 475 2145 115 7 0 chr3 198060569 198060873 -29463705 - AluSx SINE Alu -6 306 1 583 246 97 6 chr3 198061510 198061685 -29462893 - MLT1J LTR MaLR -320 191 1 839 252 64 5 chr3 198062776 198062994 -29461584 + MIR SINE MIR 11 241 -21 34 55 0 0 chr3 198063916 198063971 -29460607 + AT_rich Low_complexity Low_complexity 1 55 0 208 182 0 23 chr3 198064641 198064685 -29459893 + T-rich Low_complexity Low_complexity 3 45 0 255 31 0 0 chr3 198065098 198065130 -29459448 + (CA)n Simple_repeat Simple_repeat 1 32 0 763 309 57 68 chr3 198065195 198065665 -29458913 + L1ME1 LINE L1 250 714 -5491 1261 256 79 49 chr3 198065669 198066201 -29458377 + L1M4 LINE L1 3787 4334 -1812 * 2116 169 35 61 chr3 198066197 198066812 -29457766 - L1PA16 LINE L1 0 6166 5594 1725 162 56 0 chr3 198066847 198067131 -29457447 + AluSg SINE Alu 1 300 -10 373 255 82 25 chr3 198067141 198067337 -29457241 + L1M4 LINE L1 4353 4559 -1587 1673 285 174 13 chr3 198067342 198068575 -29456003 + L1ME1 LINE L1 1072 2503 -3893 1393 253 51 26 chr3 198068576 198069030 -29455548 + L1ME1 LINE L1 5755 6219 -16 202 87 43 22 chr3 198069128 198069174 -29455404 + T-rich Low_complexity Low_complexity 3 49 0 2115 105 6 10 chr3 198069176 198069490 -29455088 - AluSp SINE Alu 0 313 1 26 50 0 0 chr3 198069534 198069574 -29455004 + AT_rich Low_complexity Low_complexity 1 40 0 1950 102 25 3 chr3 198069974 198070258 -29454320 - AluSg SINE Alu -20 290 1 222 170 55 18 chr3 198070441 198070606 -29453972 + (TA)n Simple_repeat Simple_repeat 1 171 0 339 331 118 28 chr3 198070878 198071201 -29453377 - L1MC/D LINE L1 -2164 5644 5293 236 183 0 33 chr3 198071481 198071541 -29453037 + (CATA)n Simple_repeat Simple_repeat 2 59 0 274 386 68 17 chr3 198071932 198072168 -29452410 - MIR SINE MIR -10 252 5 279 315 11 43 chr3 198072780 198072872 -29451706 + L2 LINE L2 3183 3271 -1 25 0 0 0 chr3 198073171 198073196 -29451382 + AT_rich Low_complexity Low_complexity 1 25 0 414 204 41 23 chr3 198073196 198073368 -29451210 + (TA)n Simple_repeat Simple_repeat 2 176 0 392 259 9 37 chr3 198073426 198073534 -29451044 - MIR SINE MIR -101 161 57 332 338 73 50 chr3 198073832 198074134 -29450444 + L2 LINE L2 1180 1488 -1826 489 168 20 20 chr3 198074175 198074276 -29450302 + ORSL DNA AcHobo 175 275 0 286 336 69 49 chr3 198074293 198074540 -29450038 + L2 LINE L2 1530 1781 -1533 37 39 0 0 chr3 198074561 198074612 -29449966 + AT_rich Low_complexity Low_complexity 1 51 0 1208 205 26 13 chr3 198074635 198074937 -29449641 - L1M4 LINE L1 -2002 4144 3839 2526 180 38 24 chr3 198074945 198075527 -29449051 - L1MB3 LINE L1 -1 6182 5593 1446 90 51 26 chr3 198075541 198075775 -29448803 - L1MA2 LINE L1 -4 6300 6061 5582 222 77 63 chr3 198075781 198077415 -29447163 - L1MB3 LINE L1 -583 5600 3823 620 148 59 0 chr3 198077415 198077516 -29447062 - FLAM_A SINE Alu -18 124 18 5582 222 77 63 chr3 198077516 198078274 -29446304 - L1MB3 LINE L1 -2360 3823 3077 396 211 66 59 chr3 198078318 198078470 -29446108 - L1MCc LINE L1 -5010 1413 1261 22 0 0 0 chr3 198078527 198078549 -29446029 + AT_rich Low_complexity Low_complexity 1 22 0 1240 303 83 5 chr3 198078556 198078580 -29445998 - L1MCc LINE L1 -5158 1265 1244 209 32 0 32 chr3 198078580 198078611 -29445967 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 1240 303 83 5 chr3 198078611 198079029 -29445549 - L1MCc LINE L1 -5179 1244 788 1424 220 92 9 chr3 198079209 198079546 -29445032 - MLT1A1 LTR MaLR 0 365 1 510 299 25 20 chr3 198079613 198079810 -29444768 - L1MCc LINE L1 -5974 449 252 249 331 27 14 chr3 198079999 198080147 -29444431 - L1MEd LINE L1 -5914 205 56 27 62 0 0 chr3 198080262 198080310 -29444268 + AT_rich Low_complexity Low_complexity 1 48 0 372 304 81 13 chr3 198080890 198081116 -29443462 - L1M4c LINE L1 -865 1878 1510 871 359 64 19 chr3 198081279 198081795 -29442783 + L2 LINE L2 2269 2807 -507 311 330 50 0 chr3 198081828 198081928 -29442650 + L2 LINE L2 2946 3050 -222 21 0 0 0 chr3 198082061 198082082 -29442496 + AT_rich Low_complexity Low_complexity 1 21 0 493 235 42 8 chr3 198082120 198082239 -29442339 - L2 LINE L2 -4 3309 3187 551 261 133 0 chr3 198082437 198082602 -29441976 - MER5A DNA MER1_type 0 189 3 562 318 26 0 chr3 198082699 198082888 -29441690 - LTR33 LTR ERVL -325 196 3 547 321 162 6 chr3 198082896 198083223 -29441355 - L2 LINE L2 -129 3184 2807 196 320 41 31 chr3 198083226 198083323 -29441255 - L2 LINE L2 -661 2653 2556 425 250 0 20 chr3 198083325 198083425 -29441153 - MIR SINE MIR -43 219 122 2185 84 3 10 chr3 198083665 198083973 -29440605 - AluSq SINE Alu -7 306 1 1326 174 102 11 chr3 198084481 198084745 -29439833 + AluJo SINE Alu 11 298 -14 203 255 0 0 chr3 198087216 198087263 -29437315 + (CAGAGA)n Simple_repeat Simple_repeat 2 48 0 355 284 136 26 chr3 198087468 198087623 -29436955 + MIR SINE MIR 91 262 0 206 250 0 39 chr3 198089793 198089845 -29434733 + L2 LINE L2 3262 3311 -2 1599 240 29 13 chr3 198091634 198092084 -29432494 - Charlie1b DNA MER1_type 0 523 67 1876 236 40 42 chr3 198092085 198092655 -29431923 - L1MEc LINE L1 -3353 2862 2293 3430 132 6 2 chr3 198092655 198093195 -29431383 + L1PA15 LINE L1 5616 6157 -8 1876 236 40 42 chr3 198093195 198093841 -29430737 - L1MEc LINE L1 -3922 2293 1699 2131 182 33 0 chr3 198093842 198094270 -29430308 + L1MA8 LINE L1 5847 6288 -3 273 295 116 0 chr3 198095069 198095181 -29429397 - MIR SINE MIR 0 262 138 3504 255 69 51 chr3 198095181 198095531 -29429047 - L1 LINE L1 -3361 3806 3464 2319 173 4 42 chr3 198095531 198095982 -29428596 - Tigger2a DNA MER2_type 0 434 1 3504 255 69 51 chr3 198095982 198096053 -29428525 - L1 LINE L1 -3703 3464 3396 2234 110 0 3 chr3 198096053 198096362 -29428216 - AluSx SINE Alu -4 308 1 3504 255 69 51 chr3 198096362 198098409 -29426169 - L1 LINE L1 -3771 3396 1587 232 246 0 18 chr3 198099170 198099227 -29425351 - L1 LINE L1 -6082 1016 961 582 168 0 28 chr3 198099748 198099855 -29424723 + MER54B LTR ERVL 578 681 -112 26 74 0 0 chr3 198099922 198099976 -29424602 + AT_rich Low_complexity Low_complexity 1 54 0 330 143 0 0 chr3 198099976 198100039 -29424539 + (TA)n Simple_repeat Simple_repeat 1 63 0 2474 258 37 37 chr3 198100345 198100776 -29423802 - L1ME2 LINE L1 -30 6203 5773 2579 92 95 5 chr3 198100776 198101187 -29423391 - LTR7 LTR ERV1 -2 448 1 2474 258 37 37 chr3 198101187 198101713 -29422865 - L1ME2 LINE L1 -460 5773 5243 185 83 28 0 chr3 198101773 198101809 -29422769 + (TA)n Simple_repeat Simple_repeat 2 38 0 3742 181 26 25 chr3 198101844 198102524 -29422054 - MER54B LTR ERVL -112 681 1 749 242 13 83 chr3 198102526 198102840 -29421738 - L1ME2 LINE L1 -1048 5167 4876 1289 289 54 22 chr3 198102882 198103947 -29420631 - L1ME2 LINE L1 -1804 4411 953 1226 168 15 0 chr3 198103955 198104158 -29420420 + MER2 DNA MER2_type 1 206 -139 31 44 0 0 chr3 198104172 198104217 -29420361 + AT_rich Low_complexity Low_complexity 1 45 0 621 260 246 9 chr3 198104259 198104597 -29419981 - L1ME2 LINE L1 -5867 529 112 398 356 0 0 chr3 198104598 198104730 -29419848 - LTR33 LTR ERVL -389 132 1 334 375 16 25 chr3 198105050 198105295 -29419283 - MIR SINE MIR 0 262 20 306 0 0 0 chr3 198105964 198105998 -29418580 + (TG)n Simple_repeat Simple_repeat 1 34 0 285 167 0 0 chr3 198106011 198106089 -29418489 + (TA)n Simple_repeat Simple_repeat 2 79 0 215 385 89 0 chr3 198106312 198106447 -29418131 + L3 LINE CR1 1429 1575 -2 22 35 0 0 chr3 198106579 198106608 -29417970 + AT_rich Low_complexity Low_complexity 1 29 0 360 311 10 10 chr3 198106608 198106711 -29417867 - MIR3 SINE MIR -39 169 67 181 387 8 8 chr3 198108429 198108548 -29416030 + L2 LINE L2 2640 2758 -556 1004 164 44 58 chr3 198108550 198108775 -29415803 + MLT2A2 LTR ERVL 1 222 -231 491 257 24 53 chr3 198108986 198109192 -29415386 + MER58C DNA MER1_type 1 200 -15 32 57 0 0 chr3 198110114 198110167 -29414411 + AT_rich Low_complexity Low_complexity 1 53 0 196 192 19 39 chr3 198110750 198110802 -29413776 - L2 LINE L2 0 3313 3263 497 269 71 52 chr3 198111328 198111540 -29413038 - MIR SINE MIR -42 220 5 2358 184 73 15 chr3 198112251 198112714 -29411864 - MLT1D LTR MaLR 0 505 16 25 65 0 0 chr3 198113682 198113728 -29410850 + AT_rich Low_complexity Low_complexity 1 46 0 186 243 29 86 chr3 198114107 198114177 -29410401 - L2 LINE L2 -70 3202 3137 509 333 97 0 chr3 198114575 198114761 -29409817 - MIR SINE MIR -57 205 2 28 29 0 0 chr3 198114796 198114831 -29409747 + AT_rich Low_complexity Low_complexity 1 35 0 303 250 28 46 chr3 198115183 198115291 -29409287 - L1MC4 LINE L1 -1323 6719 6614 348 104 26 13 chr3 198115296 198115373 -29409205 + (TA)n Simple_repeat Simple_repeat 1 78 0 * 390 57 0 0 chr3 198115372 198115425 -29409153 + (GA)n Simple_repeat Simple_repeat 2 54 0 393 22 0 0 chr3 198116701 198116747 -29407831 + (TG)n Simple_repeat Simple_repeat 1 46 0 974 279 15 82 chr3 198117008 198117399 -29407179 + L2 LINE L2 2945 3309 -4 444 331 160 44 chr3 198117656 198117795 -29406783 + L2 LINE L2 257 378 -2936 2255 129 25 6 chr3 198117795 198118152 -29406426 - THE1B LTR MaLR 0 364 1 444 331 160 44 chr3 198118152 198118313 -29406265 + L2 LINE L2 378 519 -2795 2106 122 3 6 chr3 198118313 198118625 -29405953 - AluY SINE Alu 0 311 1 444 331 160 44 chr3 198118625 198119188 -29405390 + L2 LINE L2 519 1286 -2028 1779 137 75 33 chr3 198120288 198120647 -29403931 + THE1C LTR MaLR 1 374 -1 343 365 100 30 chr3 198120694 198120995 -29403583 - L2 LINE L2 -2685 629 308 27 0 0 0 chr3 198121882 198121909 -29402669 + AT_rich Low_complexity Low_complexity 1 27 0 608 347 44 32 chr3 198122216 198122625 -29401953 - L1MCc LINE L1 -5824 599 186 442 244 26 9 chr3 198122635 198122750 -29401828 - L1MCc LINE L1 -6285 138 22 1753 231 80 35 chr3 198123569 198124055 -29400523 - MLT2B1 LTR ERVL -12 508 1 499 248 78 82 chr3 198124284 198124490 -29400088 + MIR SINE MIR 58 262 0 2052 116 10 0 chr3 198124784 198125076 -29399502 - AluSq SINE Alu -18 295 1 183 186 0 0 chr3 198125140 198125183 -29399395 + (TA)n Simple_repeat Simple_repeat 2 44 0 773 322 169 25 chr3 198125283 198126305 -29398273 + L2 LINE L2 1380 2603 -711 1950 140 8 69 chr3 198126363 198126742 -29397836 - L1PB4 LINE L1 -12 6144 5789 222 37 0 0 chr3 198126763 198126797 -29397781 + (CA)n Simple_repeat Simple_repeat 1 61 0 222 37 0 0 chr3 198126797 198126824 -29397754 + (CA)n Simple_repeat Simple_repeat 2 28 0 2110 209 8 56 chr3 198126850 198127523 -29397055 - L1PB4 LINE L1 -689 5467 4835 220 340 32 109 chr3 198127572 198127857 -29396721 - L2 LINE L2 0 3272 3010 2106 116 0 13 chr3 198128138 198128441 -29396137 + AluSq SINE Alu 1 299 -14 27580 92 9 8 chr3 198129545 198135977 -29388601 + L1PA7 LINE L1 1 6464 -5 219 127 18 36 chr3 198136214 198136269 -29388309 + (TTTG)n Simple_repeat Simple_repeat 2 55 0 523 334 106 37 chr3 198136610 198137128 -29387450 + MLT1K LTR MaLR 21 574 -14 451 375 41 26 chr3 198137244 198137633 -29386945 + L2 LINE L2 2581 2975 -339 318 26 0 0 chr3 198138069 198138108 -29386470 + (CA)n Simple_repeat Simple_repeat 2 40 0 811 289 35 65 chr3 198138463 198138742 -29385836 - L2 LINE L2 -1 3312 3047 663 207 16 0 chr3 198138742 198138863 -29385715 - FLAM_A SINE Alu -10 123 1 811 289 35 65 chr3 198138863 198138981 -29385597 - L2 LINE L2 -266 3047 2927 2584 55 0 3 chr3 198139887 198140194 -29384384 + AluY SINE Alu 4 309 -2 2246 118 3 10 chr3 198140843 198141157 -29383421 + AluSp SINE Alu 1 312 -1 734 286 35 5 chr3 198141375 198141574 -29383004 - MIR SINE MIR -44 218 14 198 167 0 0 chr3 198143706 198143742 -29380836 + (TG)n Simple_repeat Simple_repeat 2 37 0 210 71 0 0 chr3 198143751 198143779 -29380799 + (CGG)n Simple_repeat Simple_repeat 3 30 0 21 0 0 0 chr3 198143937 198143958 -29380620 + AT_rich Low_complexity Low_complexity 1 21 0 238 154 77 106 chr3 198147270 198147374 -29377204 + L3 LINE CR1 1476 1576 -1 21 0 0 0 chr3 198147942 198147963 -29376615 + AT_rich Low_complexity Low_complexity 1 21 0 333 209 23 23 chr3 198148550 198148636 -29375942 - MLT1L LTR MaLR -18 597 512 971 207 9 50 chr3 198148783 198149005 -29375573 - MER20 DNA MER1_type 0 219 7 201 39 0 0 chr3 198149062 198149088 -29375490 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 1099 298 97 16 chr3 198150133 198150701 -29373877 - MLT1L LTR MaLR -1 614 1 24 53 0 0 chr3 198151787 198151825 -29372753 + AT_rich Low_complexity Low_complexity 1 38 0 1444 237 140 22 chr3 198152526 198153192 -29371386 - HsTC2a DNA MER2_type 0 744 1 246 393 49 6 chr3 198153425 198153588 -29370990 + MIR3 SINE MIR 21 190 -18 381 196 7 14 chr3 198154155 198154298 -29370280 + (TA)n Simple_repeat Simple_repeat 1 142 0 29 0 0 0 chr3 198154706 198154735 -29369843 + AT_rich Low_complexity Low_complexity 1 29 0 304 290 89 65 chr3 198154991 198155115 -29369463 - MIR3 SINE MIR -23 185 59 21 0 0 0 chr3 198155638 198155659 -29368919 + AT_rich Low_complexity Low_complexity 1 21 0 481 79 0 0 chr3 198155765 198155828 -29368750 - Alu SINE Alu -16 296 234 2561 59 0 0 chr3 198156326 198156629 -29367949 + AluY SINE Alu 1 303 -8 197 217 181 24 chr3 198157915 198157998 -29366580 + MIR SINE MIR 166 261 -1 180 197 82 33 chr3 198158631 198158692 -29365886 + L3 LINE CR1 1250 1313 -264 315 0 0 0 chr3 198160010 198160045 -29364533 + (CA)n Simple_repeat Simple_repeat 2 36 0 23 0 0 0 chr3 198160985 198161008 -29363570 + AT_rich Low_complexity Low_complexity 1 23 0 2127 117 0 0 chr3 198161018 198161333 -29363245 + AluSg SINE Alu 1 315 0 423 292 23 64 chr3 198163512 198163617 -29360961 + MIR SINE MIR 97 194 -68 324 0 0 0 chr3 198163617 198163653 -29360925 + (GA)n Simple_repeat Simple_repeat 2 37 0 423 292 23 64 chr3 198163653 198163718 -29360860 + MIR SINE MIR 194 260 -2 354 150 17 0 chr3 198163858 198163918 -29360660 - L2 LINE L2 -1091 2223 2163 392 268 98 0 chr3 198163945 198164068 -29360510 + MIR SINE MIR 72 206 -56 23 54 0 0 chr3 198165788 198165825 -29358753 + AT_rich Low_complexity Low_complexity 1 37 0 27 106 0 0 chr3 198165893 198165997 -29358581 + AT_rich Low_complexity Low_complexity 1 104 0 322 303 17 0 chr3 198166063 198166182 -29358396 - L1ME LINE L1 -446 5675 5555 656 199 0 37 chr3 198166599 198166735 -29357843 - MER30B DNA MER1_type 0 230 100 258 94 75 0 chr3 198166747 198166800 -29357778 - MER30B DNA MER1_type -80 110 70 2306 134 24 55 chr3 198166847 198167302 -29357276 - LTR19A LTR ERV1 -45 441 1 309 213 125 12 chr3 198167302 198167355 -29357223 - AluY SINE Alu -238 63 2 298 154 9 100 chr3 198167359 198167404 -29357174 - L1P LINE L1 -3775 2371 2324 2165 99 0 14 chr3 198167404 198167725 -29356853 + AluSc SINE Alu 1 317 0 298 154 9 100 chr3 198167725 198167788 -29356790 - L1P LINE L1 -3822 2324 2272 5360 24 5 2 chr3 198167795 198168423 -29356155 - L1PA4 LINE L1 -8 6147 5518 560 45 0 0 chr3 198168423 198168490 -29356088 - MER30B DNA MER1_type -156 74 8 403 300 68 41 chr3 198168504 198168797 -29355781 - L1ME LINE L1 -1237 4909 4609 28 61 0 0 chr3 198168878 198168927 -29355651 + AT_rich Low_complexity Low_complexity 1 49 0 730 267 65 34 chr3 198168999 198169222 -29355356 - L1MC4 LINE L1 -146 7896 7658 1586 165 13 52 chr3 198169222 198169531 -29355047 - AluJb SINE Alu -15 297 1 730 267 65 34 chr3 198169531 198169629 -29354949 - L1MC4 LINE L1 -384 7658 7565 545 186 8 8 chr3 198169630 198169759 -29354819 - L1MA5 LINE L1 -5 6477 6349 212 155 0 56 chr3 198169787 198169858 -29354720 + (TA)n Simple_repeat Simple_repeat 1 67 0 1307 130 10 0 chr3 198169867 198170075 -29354503 + L1MA4 LINE L1 5783 5992 -308 13447 202 66 10 chr3 198170104 198170603 -29353975 - L1MA5 LINE L1 -562 5920 5450 1606 168 44 77 chr3 198170603 198170991 -29353587 - THE1C LTR MaLR 0 375 1 9181 140 9 48 chr3 198170991 198172632 -29351946 - THE1C-int LTR MaLR 0 1580 4 1806 167 44 19 chr3 198172635 198173001 -29351577 - THE1C LTR MaLR 0 375 1 13447 202 66 10 chr3 198173001 198174331 -29350247 - L1MA5 LINE L1 -1033 5449 4195 243 0 0 0 chr3 198174331 198174358 -29350220 + (TTTA)n Simple_repeat Simple_repeat 3 29 0 13447 202 66 10 chr3 198174358 198178079 -29346499 - L1MA5 LINE L1 -2287 4195 15 571 216 234 31 chr3 198178092 198178291 -29346287 - L1MC4a LINE L1 -318 7490 7240 1676 203 88 8 chr3 198178291 198178691 -29345887 + MSTB1 LTR MaLR 1 432 0 571 216 234 31 chr3 198178691 198178713 -29345865 - L1MC4a LINE L1 -568 7240 7224 900 254 29 14 chr3 198178736 198179016 -29345562 - L1MC4 LINE L1 -953 7089 6806 5687 195 14 7 chr3 198179271 198180552 -29344026 - L1MC1 LINE L1 -11 6322 5029 1057 244 152 0 chr3 198180535 198180851 -29343727 - L1MC4 LINE L1 -1212 6830 6467 * 207 231 0 0 chr3 198182034 198182073 -29342505 - MER5A DNA MER1_type -1 188 150 198 279 38 51 chr3 198182071 198182150 -29342428 + MER5A DNA MER1_type 112 189 0 * 2064 134 0 10 chr3 198183264 198183569 -29341009 + AluSc SINE Alu 1 302 -7 585 350 69 49 chr3 198184306 198184712 -29339866 + LTR33 LTR ERVL 23 436 -85 210 118 0 0 chr3 198185496 198185530 -29339048 + (CA)n Simple_repeat Simple_repeat 2 35 0 231 254 16 0 chr3 198186409 198186472 -29338106 + L3b LINE CR1 1160 1223 -360 322 285 49 0 chr3 198186719 198186842 -29337736 - MER103 DNA DNA -2 164 36 13564 149 41 5 chr3 198187261 198189595 -29334983 - Tigger1 DNA MER2_type 0 2418 1 794 227 0 18 chr3 198190802 198190965 -29333613 + FRAM SINE Alu 1 159 -17 199 0 31 31 chr3 198191010 198191042 -29333536 + (TA)n Simple_repeat Simple_repeat 1 32 0 315 213 0 0 chr3 198192427 198192507 -29332071 + (TA)n Simple_repeat Simple_repeat 1 80 0 2791 3 0 10 chr3 198192690 198192999 -29331579 + AluYa5 SINE Alu 1 306 -5 336 284 0 0 chr3 198193157 198193238 -29331340 - MIR SINE MIR -120 142 62 453 393 38 3 chr3 198193450 198193740 -29330838 + L2 LINE L2 1146 1445 -1869 43932 41 2 1 chr3 198193766 198199906 -29324672 - L1PA4 LINE L1 0 6155 7 2121 81 42 7 chr3 198199907 198200190 -29324388 - AluY SINE Alu -18 293 1 268 173 0 0 chr3 198200377 198200429 -29324149 - MLT2B1 LTR ERVL 0 520 469 1832 174 31 0 chr3 198200468 198200789 -29323789 - Tigger1 DNA MER2_type 0 2418 2088 1179 189 46 56 chr3 198200792 198201077 -29323501 - AluJb SINE Alu -4 308 27 9410 135 96 23 chr3 198201094 198202829 -29321749 - Tigger1 DNA MER2_type -335 2083 223 1368 207 75 22 chr3 198202830 198203186 -29321392 - MSTB LTR MaLR -1 374 1 1115 198 0 9 chr3 198203186 198203408 -29321170 - Tigger1 DNA MER2_type -2198 220 1 258 156 0 0 chr3 198203412 198203457 -29321121 + (TA)n Simple_repeat Simple_repeat 2 46 0 1710 198 116 30 chr3 198203464 198203903 -29320675 - MLT2B1 LTR ERVL -41 479 3 22 35 0 0 chr3 198203905 198203934 -29320644 + AT_rich Low_complexity Low_complexity 1 29 0 589 287 157 0 chr3 198204051 198204267 -29320311 + MIR SINE MIR 2 251 -11 541 252 34 78 chr3 198204293 198204499 -29320079 - LTR33 LTR ERVL -31 490 294 404 375 49 12 chr3 198204619 198204864 -29319714 - LTR33 LTR ERVL -247 274 21 225 154 0 0 chr3 198204878 198204917 -29319661 + (CAT)n Simple_repeat Simple_repeat 3 41 0 896 324 119 68 chr3 198205103 198205958 -29318620 - L2 LINE L2 -417 2897 1999 252 59 0 0 chr3 198205958 198205992 -29318586 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 203 200 0 67 chr3 198205999 198206059 -29318519 - L2 LINE L2 -1288 2026 1971 234 305 113 23 chr3 198206083 198206215 -29318363 + L2 LINE L2 1564 1683 -1631 186 71 0 0 chr3 198206215 198206243 -29318335 + (CAAAC)n Simple_repeat Simple_repeat 2 29 0 234 305 113 23 chr3 198206243 198206366 -29318212 + L2 LINE L2 1683 1842 -1472 368 292 36 0 chr3 198206372 198206509 -29318069 - MLT1L LTR MaLR -6 609 468 181 328 72 40 chr3 198206828 198206953 -29317625 + L2 LINE L2 3182 3310 -3 30 45 0 0 chr3 198207737 198207781 -29316797 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr3 198207964 198207985 -29316593 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr3 198208253 198208277 -29316301 + (TTTTTG)n Simple_repeat Simple_repeat 2 25 0 263 315 110 0 chr3 198209091 198209218 -29315360 - MIR SINE MIR -37 225 85 203 348 163 0 chr3 198209534 198209675 -29314903 + MIR SINE MIR 44 207 -55 692 241 215 0 chr3 198209677 198209942 -29314636 - MER5C DNA MER1_type -2 322 1 257 217 67 0 chr3 198209942 198209997 -29314581 + L2 LINE L2 3241 3299 -14 202 268 18 0 chr3 198211223 198211279 -29313299 + (TTA)n Simple_repeat Simple_repeat 2 58 0 282 259 0 0 chr3 198211329 198211383 -29313195 + Charlie1 DNA MER1_type 2 55 -2706 * 1315 225 40 27 chr3 198211378 198211783 -29312795 + Charlie1 DNA MER1_type 2352 2761 0 395 302 98 6 chr3 198211854 198212072 -29312506 - MIR SINE MIR 0 262 19 2370 86 3 0 chr3 198212141 198212443 -29312135 - AluSp SINE Alu -10 303 1 226 297 31 0 chr3 198213854 198213918 -29310660 - L2 LINE L2 -17 3296 3231 391 231 131 75 chr3 198214032 198214231 -29310347 + MER63A DNA MER1_type 1 210 0 536 268 111 70 chr3 198214689 198215301 -29309277 - L1ME4a LINE L1 -6 6115 5479 224 292 28 14 chr3 198215362 198215434 -29309144 + MIR SINE MIR 177 249 -13 383 250 226 0 chr3 198215451 198215575 -29309003 - MLT1J2 LTR MaLR -54 396 245 276 313 54 42 chr3 198215760 198215926 -29308652 + L2 LINE L2 3146 3313 0 24 0 0 0 chr3 198216930 198216954 -29307624 + AT_rich Low_complexity Low_complexity 1 24 0 742 218 0 0 chr3 198217362 198217509 -29307069 - L1MB5 LINE L1 -71 6103 5957 225 258 89 40 chr3 198217532 198217656 -29306922 - L1MC4 LINE L1 -10 8032 7903 38 61 0 0 chr3 198217657 198217723 -29306855 + AT_rich Low_complexity Low_complexity 1 66 0 219 382 76 17 chr3 198217798 198218036 -29306542 + L2 LINE L2 2652 2903 -411 749 264 97 9 chr3 198218197 198218424 -29306154 + MIR SINE MIR 5 251 -11 2579 172 17 9 chr3 198218922 198219382 -29305196 - MLT1C LTR MaLR -3 464 1 23 0 0 0 chr3 198220192 198220215 -29304363 + AT_rich Low_complexity Low_complexity 1 23 0 324 250 0 0 chr3 198221799 198221911 -29302667 + CT-rich Low_complexity Low_complexity 3 114 0 2360 102 0 0 chr3 198222390 198222695 -29301883 + AluSg SINE Alu 1 305 -5 308 359 57 6 chr3 198223235 198223394 -29301184 + L2 LINE L2 3147 3313 0 246 283 58 50 chr3 198224301 198224421 -29300157 - L2 LINE L2 -462 2852 2732 276 299 58 101 chr3 198224581 198224973 -29299605 - L2 LINE L2 -811 2503 2139 1534 187 20 30 chr3 198224973 198225272 -29299306 + AluJo SINE Alu 3 298 -14 276 299 58 101 chr3 198225272 198225414 -29299164 - L2 LINE L2 -1175 2139 1992 981 35 43 0 chr3 198225421 198225562 -29299016 - L1P LINE L1 -745 5423 5277 5148 90 14 1 chr3 198225562 198226282 -29298296 + L1PA10 LINE L1 5438 6167 -1 218 324 153 46 chr3 198226291 198226351 -29298227 - L2 LINE L2 -1332 1982 1930 1631 120 123 28 chr3 198226351 198226635 -29297943 + AluSx SINE Alu 1 311 -1 218 324 153 46 chr3 198226635 198226991 -29297587 - L2 LINE L2 -1384 1930 1521 195 42 0 0 chr3 198227571 198227595 -29296983 + (TTTTTA)n Simple_repeat Simple_repeat 2 25 0 550 235 220 85 chr3 198228661 198228861 -29295717 - MIR SINE MIR -22 240 14 23 0 0 0 chr3 198228993 198229016 -29295562 + AT_rich Low_complexity Low_complexity 1 23 0 655 275 116 52 chr3 198229049 198229757 -29294821 - L1ME4a LINE L1 -71 6050 5298 348 239 0 23 chr3 198230338 198230426 -29294152 - L2 LINE L2 -240 3073 2988 25 31 0 0 chr3 198231234 198231266 -29293312 + AT_rich Low_complexity Low_complexity 1 32 0 24 0 0 0 chr3 198231337 198231361 -29293217 + AT_rich Low_complexity Low_complexity 1 24 0 186 147 29 0 chr3 198231432 198231466 -29293112 - L3 LINE CR1 -19 1558 1524 183 239 149 0 chr3 198231466 198231499 -29293079 - MIR3 SINE MIR -23 185 109 273 186 206 21 chr3 198231587 198231684 -29292894 - L1ME LINE L1 -498 5606 5492 349 276 204 38 chr3 198231788 198232052 -29292526 + L1 LINE L1 4744 5051 -1095 1780 144 64 64 chr3 198232667 198233027 -29291551 - THE1B LTR MaLR -4 360 1 584 272 157 12 chr3 198233104 198233589 -29290989 - L1ME LINE L1 -1438 4691 4137 2079 97 0 53 chr3 198233754 198234074 -29290504 - AluSx SINE Alu -9 303 1 368 225 14 0 chr3 198234099 198234170 -29290408 + Charlie4 DNA MER1_type 1886 1957 -4 27 0 0 0 chr3 198234555 198234582 -29289996 + AT_rich Low_complexity Low_complexity 1 27 0 27 0 0 0 chr3 198234765 198234792 -29289786 + AT_rich Low_complexity Low_complexity 1 27 0 399 298 121 25 chr3 198234794 198235555 -29289023 - L1ME LINE L1 -3065 3064 2231 365 306 84 56 chr3 198235586 198235978 -29288600 - L1ME LINE L1 -4080 2230 1828 480 325 94 8 chr3 198236133 198236728 -29287850 - L1MEd LINE L1 -4658 1652 967 14365 35 0 5 chr3 198236797 198239323 -29285255 - L1PA4 LINE L1 0 6155 3637 190 280 0 0 chr3 198239399 198239449 -29285129 + L2 LINE L2 2202 2251 -1063 487 278 120 43 chr3 198239738 198239972 -29284606 + MIR SINE MIR 11 262 0 478 347 40 10 chr3 198240764 198240963 -29283615 - MIR SINE MIR -12 250 46 793 306 24 8 chr3 198241238 198241490 -29283088 - MIR SINE MIR -1 261 6 23 54 0 0 chr3 198241611 198241648 -29282930 + AT_rich Low_complexity Low_complexity 1 37 0 252 122 0 0 chr3 198241831 198241872 -29282706 + (TG)n Simple_repeat Simple_repeat 1 41 0 3326 255 57 22 chr3 198241906 198243387 -29281191 - L1ME LINE L1 -667 5495 3951 451 244 206 56 chr3 198243412 198243699 -29280879 - L1ME2 LINE L1 -8 6154 5825 181 275 58 14 chr3 198243852 198243921 -29280657 + L2 LINE L2 67 138 -3176 218 289 22 0 chr3 198243957 198244002 -29280576 - MER5A DNA MER1_type -134 55 10 23 0 0 0 chr3 198244110 198244133 -29280445 + AT_rich Low_complexity Low_complexity 1 23 0 2083 111 0 14 chr3 198244811 198245131 -29279447 + AluSq SINE Alu 1 316 0 15810 36 2 0 chr3 198245764 198248457 -29276121 - L1PA4 LINE L1 -1 6154 3457 228 347 68 90 chr3 198248473 198248695 -29275883 + L2 LINE L2 3037 3253 -19 1480 95 54 21 chr3 198248810 198249052 -29275526 - L1PA10 LINE L1 -1 6167 5918 38 39 0 0 chr3 198249348 198249400 -29275178 + AT_rich Low_complexity Low_complexity 1 52 0 207 69 0 0 chr3 198250792 198250821 -29273757 + (TG)n Simple_repeat Simple_repeat 2 30 0 225 238 0 0 chr3 198250986 198251028 -29273550 - L2 LINE L2 -12 3260 3219 26 82 0 0 chr3 198251225 198251286 -29273292 + AT_rich Low_complexity Low_complexity 1 61 0 331 310 170 72 chr3 198252245 198253661 -29270917 + L2 LINE L2 1714 3312 -1 1138 240 73 10 chr3 198254130 198254513 -29270065 + Charlie4a DNA MER1_type 97 503 -5 357 282 84 35 chr3 198255535 198255677 -29268901 + MIR SINE MIR 20 168 -94 1067 196 5 36 chr3 198257115 198257339 -29267239 + AluJb SINE Alu 76 292 -20 1036 215 65 8 chr3 198258939 198259186 -29265392 - L1MC1 LINE L1 -6 6327 6067 * 1987 155 117 18 chr3 198259179 198259624 -29264954 - L1MCa LINE L1 -5031 1395 907 1822 200 217 82 chr3 198259638 198260483 -29264095 - LTR28 LTR ERV1 -13 816 1 3827 219 45 21 chr3 198260484 198261354 -29263224 - L1MCa LINE L1 -5518 908 18 1796 69 4 9 chr3 198261454 198261685 -29262893 + AluSq SINE Alu 1 230 -83 1471 139 0 13 chr3 198261949 198262186 -29262392 - L1PB2 LINE L1 -4 6147 5914 4655 182 38 4 chr3 198262205 198263478 -29261100 - L1MB1 LINE L1 0 6168 4861 22 0 0 0 chr3 198263484 198263506 -29261072 + AT_rich Low_complexity Low_complexity 1 22 0 536 224 0 9 chr3 198263535 198263651 -29260927 - L1MB1 LINE L1 -1272 4874 4760 349 171 40 0 chr3 198263660 198263736 -29260842 - L1MB1 LINE L1 -2191 3955 3877 248 363 65 20 chr3 198264005 198264250 -29260328 + L2 LINE L2 2236 2491 -823 193 327 71 26 chr3 198264256 198264369 -29260209 + L2 LINE L2 2667 2784 -530 589 25 12 12 chr3 198265457 198265537 -29259041 + (TCTA)n Simple_repeat Simple_repeat 2 81 0 558 314 80 45 chr3 198265563 198266050 -29258528 - L1MC/D LINE L1 -1991 5817 5314 233 219 15 15 chr3 198266096 198266233 -29258345 + (TA)n Simple_repeat Simple_repeat 2 138 0 320 111 19 0 chr3 198266235 198266289 -29258289 + (TG)n Simple_repeat Simple_repeat 1 55 0 6327 195 35 10 chr3 198266382 198267598 -29256980 + MSTA-int LTR MaLR 405 1651 0 2329 126 80 5 chr3 198267598 198267996 -29256582 + MSTA LTR MaLR 1 428 0 204 333 69 84 chr3 198268141 198268402 -29256176 - L2 LINE L2 0 3272 3016 220 208 42 0 chr3 198268980 198269028 -29255550 - MIR SINE MIR -160 102 53 371 234 56 28 chr3 198269403 198269510 -29255068 - MIR SINE MIR 0 262 153 11856 202 32 30 chr3 198269744 198270158 -29254420 - L1PB4 LINE L1 -82 6776 6364 2207 87 0 10 chr3 198270158 198270446 -29254132 - AluY SINE Alu -26 285 1 11856 202 32 30 chr3 198270446 198271623 -29252955 - L1PB4 LINE L1 -494 6364 5191 2384 79 0 19 chr3 198271623 198271939 -29252639 - AluY SINE Alu -1 310 1 11856 202 32 30 chr3 198271939 198272944 -29251634 - L1PB4 LINE L1 -1667 5191 4190 297 0 0 0 chr3 198272944 198272977 -29251601 + (TTG)n Simple_repeat Simple_repeat 1 33 0 11856 202 32 30 chr3 198272977 198274158 -29250420 - L1PB4 LINE L1 -2668 4190 2980 6221 120 49 11 chr3 198274174 198275106 -29249472 - L1MA3 LINE L1 -1 6304 5319 2471 70 0 0 chr3 198275106 198275407 -29249171 - AluY SINE Alu -7 304 4 6221 120 49 11 chr3 198275407 198275534 -29249044 - L1MA3 LINE L1 -986 5319 5198 * 7389 207 55 27 chr3 198275532 198277344 -29247234 - L1PB4 LINE L1 -3891 2957 1004 377 291 16 0 chr3 198277520 198277647 -29246931 - L1PB4 LINE L1 -5777 1072 944 2121 128 10 0 chr3 198277670 198277968 -29246610 - AluSx SINE Alu -11 301 1 193 286 114 0 chr3 198278009 198278079 -29246499 - MIR SINE MIR -74 188 111 24 0 0 0 chr3 198279069 198279093 -29245485 + AT_rich Low_complexity Low_complexity 1 24 0 234 0 0 0 chr3 198279278 198279304 -29245274 + (CA)n Simple_repeat Simple_repeat 2 27 0 181 235 137 0 chr3 198280141 198280192 -29244386 + L2 LINE L2 2279 2336 -978 305 241 0 0 chr3 198280321 198280379 -29244199 + Charlie5 DNA MER1_type 8 65 -2547 * 434 182 20 10 chr3 198280372 198280471 -29244107 + Charlie5 DNA MER1_type 2486 2585 -27 624 305 40 5 chr3 198280474 198280674 -29243904 - MLT1I LTR MaLR -19 390 184 1742 182 0 0 chr3 198281415 198281711 -29242867 + AluSg SINE Alu 1 296 -14 312 309 162 0 chr3 198281718 198281854 -29242724 + MIR SINE MIR 22 179 -83 307 217 133 0 chr3 198282410 198282493 -29242085 - MIR SINE MIR -134 128 35 1675 208 96 77 chr3 198284413 198284923 -29239655 - MLT2B1 LTR ERVL 0 520 1 8787 173 41 4 chr3 198284923 198285197 -29239381 - ERVL-B1 LTR ERVL -7 5757 5495 291 28 0 0 chr3 198285197 198285233 -29239345 + (TG)n Simple_repeat Simple_repeat 2 37 0 8787 173 41 4 chr3 198285233 198287089 -29237489 - ERVL-B1 LTR ERVL -269 5495 3505 214 115 77 0 chr3 198287090 198287142 -29237436 + (TA)n Simple_repeat Simple_repeat 1 56 0 276 202 21 64 chr3 198287146 198287240 -29237338 - L1MC4 LINE L1 -1339 6703 6614 532 136 68 0 chr3 198287240 198287402 -29237176 + (TA)n Simple_repeat Simple_repeat 2 174 0 234 217 0 17 chr3 198287402 198287462 -29237116 - L1MCa LINE L1 -4362 2064 2006 230 186 70 47 chr3 198287449 198287535 -29237043 - L1MC4 LINE L1 -1339 6703 6616 * 316 181 63 0 chr3 198287535 198287662 -29236916 + (TA)n Simple_repeat Simple_repeat 2 136 0 3421 159 2 6 chr3 198287663 198288209 -29236369 - ERVL-B1 LTR ERVL -2271 3493 2950 648 313 0 5 chr3 198288209 198288407 -29236171 - MLT1I LTR MaLR -206 203 7 989 313 60 45 chr3 198289317 198290316 -29234262 - HAL1 LINE L1 -811 1696 683 366 387 48 41 chr3 198291441 198291883 -29232695 - L2 LINE L2 -20 3252 2808 719 328 139 37 chr3 198291925 198291973 -29232605 - L2 LINE L2 -559 2755 2713 297 0 0 0 chr3 198291973 198292006 -29232572 + (TG)n Simple_repeat Simple_repeat 1 33 0 719 328 139 37 chr3 198292006 198292770 -29231808 - L2 LINE L2 -601 2713 1860 1995 131 3 0 chr3 198292770 198293086 -29231492 - AluSq SINE Alu 0 317 1 4229 51 0 2 chr3 198293286 198293815 -29230763 + L1PA7 LINE L1 5623 6150 -4 294 337 0 0 chr3 198294098 198294190 -29230388 + L2 LINE L2 3221 3312 -1 225 191 0 0 chr3 198296465 198296512 -29228066 + (TA)n Simple_repeat Simple_repeat 1 47 0 333 275 26 79 chr3 198296514 198296703 -29227875 + MER112 DNA MER1_type 81 259 -1 334 107 0 0 chr3 198297080 198297136 -29227442 - L1MA2 LINE L1 0 6304 6249 27 62 0 0 chr3 198297916 198297964 -29226614 + AT_rich Low_complexity Low_complexity 1 48 0 291 362 26 20 chr3 198299418 198299570 -29225008 + MIR SINE MIR 29 181 -81 1620 179 62 3 chr3 198300181 198300505 -29224073 - MER61A LTR ERV1 0 343 1 277 299 213 0 chr3 198300640 198300780 -29223798 + MER5A DNA MER1_type 4 178 -11 445 314 94 67 chr3 198301002 198301343 -29223235 + L3 LINE CR1 1223 1572 -5 25 0 0 0 chr3 198301802 198301827 -29222751 + AT_rich Low_complexity Low_complexity 1 25 0 1742 207 170 59 chr3 198302124 198302853 -29221725 - L1ME2 LINE L1 -95 6864 6055 2766 268 115 44 chr3 198302861 198303179 -29221399 - L1ME2 LINE L1 -2145 4796 4502 1501 174 32 44 chr3 198303179 198303495 -29221083 - AluJb SINE Alu 0 312 1 2766 268 115 44 chr3 198303495 198304246 -29220332 - L1ME2 LINE L1 -2439 4502 3805 1525 189 39 0 chr3 198304246 198304531 -29220047 + AluJo SINE Alu 1 296 -16 2766 268 115 44 chr3 198304531 198306597 -29217981 - L1ME2 LINE L1 -3136 3805 1271 2286 41 45 10 chr3 198307656 198307947 -29216631 - AluY SINE Alu -10 301 1 316 171 24 12 chr3 198308035 198308117 -29216461 + GA-rich Low_complexity Low_complexity 1 83 0 222 328 0 0 chr3 198308119 198308177 -29216401 + polypurine Low_complexity Low_complexity 2 59 0 237 357 30 71 chr3 198309429 198309597 -29214981 - L2 LINE L2 -4 3268 3108 194 31 0 62 chr3 198309723 198309755 -29214823 + (TTTTTG)n Simple_repeat Simple_repeat 2 31 0 2096 108 11 3 chr3 198310002 198310289 -29214289 + AluSc SINE Alu 3 291 -18 487 307 69 104 chr3 198310375 198310779 -29213799 + L2 LINE L2 2054 2443 -871 1582 292 30 25 chr3 198311361 198311892 -29212686 + L2 LINE L2 2440 2973 -341 424 300 116 69 chr3 198312155 198312518 -29212060 + MLT1I LTR MaLR 28 407 -2 278 292 229 0 chr3 198312609 198312705 -29211873 - L2 LINE L2 -5 3308 3191 33 0 0 0 chr3 198315317 198315350 -29209228 + AT_rich Low_complexity Low_complexity 1 33 0 833 103 39 7 chr3 198315676 198315831 -29208747 - L1MA8 LINE L1 -4 6287 6128 180 0 0 0 chr3 198315843 198315863 -29208715 + (TTCC)n Simple_repeat Simple_repeat 1 20 0 431 96 21 43 chr3 198315863 198315957 -29208621 + (TTTCC)n Simple_repeat Simple_repeat 3 94 0 1569 138 60 3 chr3 198315961 198316244 -29208334 - AluSq SINE Alu -14 299 1 317 140 70 0 chr3 198316245 198316302 -29208276 - L1MA8 LINE L1 -220 6071 6011 1964 100 13 20 chr3 198316385 198316686 -29207892 - AluY SINE Alu -12 299 1 27 0 0 0 chr3 198316893 198316920 -29207658 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr3 198317104 198317130 -29207448 + AT_rich Low_complexity Low_complexity 1 26 0 410 327 28 33 chr3 198317185 198317399 -29207179 - HAL1 LINE L1 -1484 1023 811 239 313 13 98 chr3 198317863 198318087 -29206491 - L2 LINE L2 -224 3048 2844 233 277 223 11 chr3 198318172 198318266 -29206312 + MIR SINE MIR 32 145 -63 1928 138 3 3 chr3 198318420 198318711 -29205867 - AluSg SINE Alu -19 291 1 23 33 0 0 chr3 198319271 198319301 -29205277 + AT_rich Low_complexity Low_complexity 1 30 0 456 216 102 72 chr3 198319866 198320033 -29204545 - MER5B DNA MER1_type -5 173 2 230 380 23 8 chr3 198320047 198320176 -29204402 - L2 LINE L2 -577 2737 2607 229 283 179 58 chr3 198320846 198321072 -29203506 + MIR SINE MIR 14 262 0 237 243 47 0 chr3 198321168 198321275 -29203303 + (TA)n Simple_repeat Simple_repeat 2 113 0 208 119 0 48 chr3 198321350 198321392 -29203186 + (TTA)n Simple_repeat Simple_repeat 3 42 0 2470 74 0 0 chr3 198321491 198321802 -29202776 + AluY SINE Alu 1 311 0 40 21 0 0 chr3 198322136 198322183 -29202395 + AT_rich Low_complexity Low_complexity 1 47 0 362 364 23 17 chr3 198322437 198322610 -29201968 - L3 LINE CR1 -1029 548 375 1444 197 33 7 chr3 198322613 198322887 -29201691 - AluJo SINE Alu -31 281 1 201 108 0 0 chr3 198322898 198322935 -29201643 + (A)n Simple_repeat Simple_repeat 1 37 0 201 338 20 108 chr3 198323060 198323208 -29201370 - L3 LINE CR1 -1436 141 7 1275 200 35 6 chr3 198323667 198323982 -29200596 + MER33 DNA MER1_type 1 324 0 28 29 0 0 chr3 198323991 198324026 -29200552 + AT_rich Low_complexity Low_complexity 1 35 0 1979 178 90 75 chr3 198324027 198324505 -29200073 - MLT1D LTR MaLR 0 505 21 338 91 18 0 chr3 198325554 198325609 -29198969 + (TAGA)n Simple_repeat Simple_repeat 1 56 0 2391 82 0 0 chr3 198325664 198325968 -29198610 + AluY SINE Alu 1 304 -7 1467 186 27 10 chr3 198326916 198327211 -29197367 + AluJo SINE Alu 8 307 -5 23 0 0 0 chr3 198327633 198327656 -29196922 + AT_rich Low_complexity Low_complexity 1 23 0 344 107 0 0 chr3 198327656 198327712 -29196866 - L1MA3 LINE L1 -5 6300 6245 222 200 0 0 chr3 198328386 198328426 -29196152 + CT-rich Low_complexity Low_complexity 1 40 0 216 283 0 0 chr3 198328650 198328696 -29195882 + L2 LINE L2 3224 3269 -3 216 388 99 5 chr3 198328694 198328895 -29195683 - L3 LINE CR1 -1121 456 237 24 0 0 0 chr3 198329517 198329541 -29195037 + AT_rich Low_complexity Low_complexity 1 24 0 2132 114 10 0 chr3 198330578 198330885 -29193693 - AluSg SINE Alu 0 310 1 369 232 61 127 chr3 198330961 198331142 -29193436 + MIR SINE MIR 16 184 -78 266 208 19 0 chr3 198331152 198331205 -29193373 - L2 LINE L2 0 3272 3219 640 332 24 21 chr3 198331250 198331597 -29192981 - L2 LINE L2 -190 3123 2770 500 261 33 6 chr3 198331597 198331777 -29192801 - HsTC2 DNA Tc2 -3 1895 1711 * 886 235 150 0 chr3 198331774 198331987 -29192591 - HsTC2 DNA Tc2 -1571 327 83 2057 120 7 0 chr3 198332916 198333224 -29191354 - AluSp SINE Alu -3 310 1 2452 48 0 14 chr3 198334912 198335206 -29189372 + AluY SINE Alu 1 290 -21 1874 206 134 18 chr3 198335255 198335702 -29188876 + MLT1D LTR MaLR 7 505 0 284 283 177 9 chr3 198335799 198335912 -29188666 - MIR3 SINE MIR -17 191 60 2752 13 0 0 chr3 198336026 198336327 -29188251 + AluYa5 SINE Alu 1 301 -10 204 262 167 48 chr3 198336401 198336569 -29188009 - L2 LINE L2 -5 3308 3121 205 204 0 23 chr3 198337594 198337638 -29186940 + CT-rich Low_complexity Low_complexity 2 44 0 204 125 0 0 chr3 198337671 198337703 -29186875 + (TTC)n Simple_repeat Simple_repeat 2 33 0 258 268 49 34 chr3 198338238 198338359 -29186219 - MIR SINE MIR -65 143 21 1659 261 50 26 chr3 198338582 198339045 -29185533 + MLT1E LTR MaLR 120 593 0 264 157 0 59 chr3 198339144 198339195 -29185383 - MIR SINE MIR 0 262 215 247 279 15 15 chr3 198339153 198339221 -29185357 - L2 LINE L2 -12 3301 3234 * 217 156 89 0 chr3 198339222 198339267 -29185311 + L2 LINE L2 2130 2178 -1136 4755 47 15 7 chr3 198339455 198340053 -29184525 - L1PA5 LINE L1 0 6154 5552 2079 125 3 0 chr3 198340071 198340359 -29184219 + AluSx SINE Alu 1 289 -23 928 300 97 37 chr3 198340397 198340861 -29183717 + L2 LINE L2 2181 2672 -642 27 0 0 0 chr3 198341474 198341501 -29183077 + AT_rich Low_complexity Low_complexity 1 27 0 21 57 0 0 chr3 198341704 198341739 -29182839 + AT_rich Low_complexity Low_complexity 1 35 0 305 326 23 0 chr3 198344474 198344603 -29179975 - L1ME LINE L1 -375 5746 5615 237 196 0 0 chr3 198344916 198344967 -29179611 + (CA)n Simple_repeat Simple_repeat 2 52 0 313 255 10 41 chr3 198345430 198345528 -29179050 + MIR SINE MIR 66 160 -102 29 28 0 0 chr3 198345601 198345637 -29178941 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr3 198346179 198346201 -29178377 + AT_rich Low_complexity Low_complexity 1 22 0 1437 322 65 30 chr3 198346284 198346880 -29177698 - MER115 DNA AcHobo -76 617 1 546 335 36 36 chr3 198347213 198347517 -29177061 - MLT1I LTR MaLR 0 409 106 2337 104 0 3 chr3 198347637 198347945 -29176633 + AluSq SINE Alu 1 307 -6 21 0 0 0 chr3 198348773 198348794 -29175784 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 198349589 198349610 -29174968 + AT_rich Low_complexity Low_complexity 1 21 0 375 351 35 18 chr3 198350306 198350477 -29174101 - MIR SINE MIR -54 208 35 802 271 18 23 chr3 198350561 198350782 -29173796 + MIR SINE MIR 7 226 -36 29 47 0 0 chr3 198351654 198351697 -29172881 + AT_rich Low_complexity Low_complexity 1 43 0 436 311 108 0 chr3 198351738 198351905 -29172673 + MIR SINE MIR 74 258 -4 419 274 46 7 chr3 198352383 198352536 -29172042 + MIR SINE MIR 104 262 0 260 308 39 19 chr3 198352752 198352856 -29171722 - L2 LINE L2 -229 3043 2938 423 47 0 0 chr3 198355920 198355984 -29168594 + L1MA3 LINE L1 6242 6305 0 2569 147 15 4 chr3 198356129 198356584 -29167994 - L1MA4 LINE L1 -5 6295 5836 249 268 99 0 chr3 198356584 198356655 -29167923 + MER112 DNA MER1_type 180 257 -3 1930 169 3 0 chr3 198357951 198358258 -29166320 + AluJo SINE Alu 1 308 -4 244 337 11 33 chr3 198358265 198358357 -29166221 + MER5A DNA MER1_type 61 150 -39 230 284 105 11 chr3 198358861 198358956 -29165622 - L2 LINE L2 -4 3268 3165 196 345 23 46 chr3 198359067 198359154 -29165424 - L2 LINE L2 -258 3014 2930 21 0 0 0 chr3 198359837 198359858 -29164720 + AT_rich Low_complexity Low_complexity 1 21 0 400 300 21 77 chr3 198360085 198360318 -29164260 - L1ME3A LINE L1 -218 5952 5733 582 301 115 14 chr3 198360367 198360746 -29163832 - L1ME3A LINE L1 -523 5641 5219 25 31 0 0 chr3 198360776 198360808 -29163770 + AT_rich Low_complexity Low_complexity 1 32 0 480 270 98 35 chr3 198361077 198361395 -29163183 - L1ME3A LINE L1 -1318 4828 4491 305 312 64 9 chr3 198361395 198361504 -29163074 - MIR SINE MIR -58 150 36 306 0 0 0 chr3 198362424 198362458 -29162120 + (T)n Simple_repeat Simple_repeat 1 34 0 440 209 0 93 chr3 198368507 198368636 -29155942 + L2 LINE L2 3197 3313 0 256 260 60 30 chr3 198370710 198370810 -29153768 - L2 LINE L2 -2 3311 3209 788 123 0 0 chr3 198371258 198371380 -29153198 - L1PA13 LINE L1 -16 6147 6026 2415 104 8 8 chr3 198371741 198372096 -29152482 - THE1A LTR MaLR 0 355 1 11679 98 2 0 chr3 198372096 198373673 -29150905 - THE1A-int LTR MaLR 0 1580 1 2271 130 8 8 chr3 198373673 198374028 -29150550 - THE1A LTR MaLR 0 355 1 234 326 101 7 chr3 198374514 198374652 -29149926 + MIR SINE MIR 110 260 -2 447 365 51 5 chr3 198375223 198375437 -29149141 + MIR SINE MIR 10 233 -29 25 0 0 0 chr3 198375720 198375745 -29148833 + AT_rich Low_complexity Low_complexity 1 25 0 1130 295 80 30 chr3 198375813 198376502 -29148076 - Charlie7 DNA MER1_type -1889 723 1 264 345 80 45 chr3 198376535 198376735 -29147843 + L2 LINE L2 2707 2913 -401 306 282 97 32 chr3 198376879 198377003 -29147575 - LTR16A LTR ERVL -162 288 157 955 236 15 5 chr3 198377754 198377957 -29146621 - MER82 DNA MER2_type 0 653 449 221 362 67 9 chr3 198378012 198378117 -29146461 + MIR SINE MIR 31 141 -121 234 0 0 0 chr3 198378217 198378243 -29146335 + (CA)n Simple_repeat Simple_repeat 2 27 0 353 261 33 0 chr3 198378244 198378336 -29146242 - MER82 DNA MER2_type -557 96 2 229 299 107 62 chr3 198378704 198378881 -29145697 + L2 LINE L2 3128 3312 -1 29 0 0 0 chr3 198379026 198379055 -29145523 + AT_rich Low_complexity Low_complexity 1 29 0 288 279 102 5 chr3 198379502 198379699 -29144879 - L1ME3A LINE L1 -234 5936 5721 435 284 104 40 chr3 198380030 198380252 -29144326 + MIR SINE MIR 14 249 -13 29 70 0 0 chr3 198385490 198385547 -29139031 + AT_rich Low_complexity Low_complexity 1 57 0 235 242 44 181 chr3 198386477 198386659 -29137919 - MIR SINE MIR -49 213 57 480 266 163 77 chr3 198387642 198387992 -29136586 - L2 LINE L2 0 3313 2934 2101 283 163 38 chr3 198387994 198389196 -29135382 - L2 LINE L2 -579 2735 1384 357 315 146 6 chr3 198389204 198389369 -29135209 - MIR SINE MIR -6 256 69 1294 261 35 25 chr3 198390326 198390720 -29133858 - MLT1C LTR MaLR 0 467 70 1637 189 10 79 chr3 198390721 198391139 -29133439 - MLT1B LTR MaLR 0 390 2 321 333 65 0 chr3 198391211 198391334 -29133244 - MIR SINE MIR -76 186 56 22 0 0 0 chr3 198391689 198391711 -29132867 + AT_rich Low_complexity Low_complexity 1 22 0 204 231 0 0 chr3 198391974 198392013 -29132565 + T-rich Low_complexity Low_complexity 4 42 0 23 0 0 0 chr3 198392353 198392376 -29132202 + AT_rich Low_complexity Low_complexity 1 23 0 222 234 0 0 chr3 198392811 198392858 -29131720 + T-rich Low_complexity Low_complexity 3 49 0 21 0 0 0 chr3 198393760 198393781 -29130797 + AT_rich Low_complexity Low_complexity 1 21 0 268 336 21 7 chr3 198393915 198394058 -29130520 - L2 LINE L2 -20 3293 3149 851 314 93 36 chr3 198394696 198395409 -29129169 + L2 LINE L2 2553 3304 -9 597 258 125 85 chr3 198396153 198396730 -29127848 - L1MC4a LINE L1 -1810 5998 5399 7254 162 24 29 chr3 198397072 198397932 -29126646 - L1PB4 LINE L1 0 6156 5293 2093 123 7 3 chr3 198397932 198398233 -29126345 - AluSx SINE Alu -10 302 1 7254 162 24 29 chr3 198398233 198399687 -29124891 - L1PB4 LINE L1 -863 5293 3844 933 242 74 103 chr3 198399814 198400289 -29124289 + MLT1G1 LTR MaLR 89 549 -46 336 309 23 3 chr3 198401083 198401259 -29123319 + MIR SINE MIR 25 257 -5 22 0 0 0 chr3 198401888 198401910 -29122668 + AT_rich Low_complexity Low_complexity 1 22 0 2662 83 0 50 chr3 198401969 198402366 -29122212 - MER51B LTR ERV1 0 377 1 261 348 92 14 chr3 198402807 198402948 -29121630 + MER5B DNA MER1_type 26 177 -1 254 237 11 65 chr3 198403070 198403163 -29121415 + MIR SINE MIR 125 212 -50 838 264 63 28 chr3 198403347 198403665 -29120913 - HAL1 LINE L1 -2118 389 61 208 91 45 0 chr3 198403888 198403932 -29120646 + GA-rich Low_complexity Low_complexity 4 49 0 270 224 41 41 chr3 198404959 198405057 -29119521 + Charlie7 DNA MER1_type 2473 2570 -42 23 33 0 0 chr3 198405757 198405787 -29118791 + AT_rich Low_complexity Low_complexity 1 30 0 234 91 0 0 chr3 198405889 198405922 -29118656 + (TG)n Simple_repeat Simple_repeat 2 34 0 22 35 0 0 chr3 198406495 198406524 -29118054 + AT_rich Low_complexity Low_complexity 1 29 0 296 336 58 10 chr3 198407018 198407122 -29117456 + MIR SINE MIR 42 150 -58 400 324 21 28 chr3 198407444 198407589 -29116989 - MIR SINE MIR -102 160 17 338 297 128 27 chr3 198408421 198408569 -29116009 + MIR3 SINE MIR 28 190 -18 602 223 114 33 chr3 198408832 198409016 -29115562 + MER20 DNA MER1_type 1 199 -20 479 314 46 6 chr3 198409212 198409387 -29115191 + MIR SINE MIR 7 188 -74 364 283 93 89 chr3 198410739 198410989 -29113589 - MIR SINE MIR -12 250 4 22 0 0 0 chr3 198410993 198411015 -29113563 + AT_rich Low_complexity Low_complexity 1 22 0 197 285 106 65 chr3 198411051 198411174 -29113404 + L2 LINE L2 3182 3309 -4 2354 124 5 18 chr3 198411232 198411612 -29112966 + THE1C LTR MaLR 1 375 0 23 0 0 0 chr3 198412328 198412351 -29112227 + AT_rich Low_complexity Low_complexity 1 23 0 422 283 62 107 chr3 198412960 198413494 -29111084 - L1ME4a LINE L1 -11 6110 5601 884 246 29 14 chr3 198413494 198413770 -29110808 - L1MD3 LINE L1 0 7995 7716 1990 127 0 10 chr3 198413779 198414070 -29110508 - AluSg SINE Alu -22 288 1 191 326 0 22 chr3 198414210 198414256 -29110322 - L2 LINE L2 -101 3171 3127 221 259 46 114 chr3 198414679 198414749 -29109829 + MIR SINE MIR 63 121 -141 2310 99 0 13 chr3 198414749 198415063 -29109515 - AluSx SINE Alu -2 310 1 221 259 46 114 chr3 198415063 198415123 -29109455 + MIR SINE MIR 121 184 -78 189 308 183 0 chr3 198415235 198415355 -29109223 - L2 LINE L2 -557 2757 2616 1656 206 102 23 chr3 198415407 198415838 -29108740 - MLT1C LTR MaLR -2 465 1 1261 160 84 4 chr3 198417359 198417596 -29106982 + AluJb SINE Alu 3 258 -54 248 304 80 0 chr3 198417831 198417943 -29106635 - MIR SINE MIR -65 143 22 2368 70 0 0 chr3 198418031 198418317 -29106261 + AluY SINE Alu 1 286 -25 195 42 0 0 chr3 198418321 198418345 -29106233 + (TAAAA)n Simple_repeat Simple_repeat 1 24 0 223 364 36 7 chr3 198418638 198418778 -29105800 + MIR SINE MIR 86 229 -33 419 278 46 0 chr3 198419712 198419820 -29104758 - MIR SINE MIR -72 190 78 2547 78 56 3 chr3 198419886 198420244 -29104334 - MER51B LTR ERV1 0 377 1 185 263 0 0 chr3 198420466 198420504 -29104074 - L2 LINE L2 -17 3296 3259 413 270 191 0 chr3 198420509 198420635 -29103943 - MIR SINE MIR -108 154 5 30 27 0 0 chr3 198421044 198421081 -29103497 + AT_rich Low_complexity Low_complexity 1 37 0 29 28 0 0 chr3 198421204 198421240 -29103338 + AT_rich Low_complexity Low_complexity 1 36 0 658 210 6 36 chr3 198421794 198421961 -29102617 + L1MD2 LINE L1 5971 6132 -227 414 94 0 0 chr3 198421962 198422026 -29102552 + (TC)n Simple_repeat Simple_repeat 2 65 0 315 0 0 0 chr3 198422026 198422061 -29102517 + (CA)n Simple_repeat Simple_repeat 1 35 0 1007 162 5 5 chr3 198422063 198422254 -29102324 + L1MD2 LINE L1 6153 6343 -16 228 67 0 0 chr3 198422257 198422287 -29102291 + (TAA)n Simple_repeat Simple_repeat 1 30 0 27 49 0 0 chr3 198422762 198422803 -29101775 + AT_rich Low_complexity Low_complexity 1 41 0 243 306 16 0 chr3 198423048 198423110 -29101468 + L2 LINE L2 3247 3309 -4 23 33 0 0 chr3 198423565 198423595 -29100983 + AT_rich Low_complexity Low_complexity 1 30 0 184 395 70 13 chr3 198423901 198424058 -29100520 - MIR SINE MIR -69 193 28 347 316 27 131 chr3 198424336 198424709 -29099869 - L2 LINE L2 -6 3266 2933 362 275 69 61 chr3 198424830 198425179 -29099399 - L2 LINE L2 -575 2739 2331 414 319 44 32 chr3 198425564 198425815 -29098763 - L2 LINE L2 -2520 794 541 444 276 145 27 chr3 198427779 198428000 -29096578 + MIR SINE MIR 15 261 -1 377 298 63 29 chr3 198428175 198428380 -29096198 + MIR SINE MIR 51 262 0 2361 85 0 7 chr3 198428446 198428752 -29095826 + AluSc SINE Alu 1 304 -5 985 31 86 0 chr3 198428809 198428937 -29095641 + MER85 DNA T2_type 1 139 0 25 0 0 0 chr3 198429217 198429242 -29095336 + AT_rich Low_complexity Low_complexity 1 25 0 308 293 131 35 chr3 198429911 198430109 -29094469 - MIR SINE MIR -32 230 14 2249 98 3 0 chr3 198432811 198433108 -29091470 + AluSg SINE Alu 1 298 -12 1469 260 41 24 chr3 198433340 198433940 -29090638 - MER20B DNA MER1_type 0 783 125 205 321 79 47 chr3 198435972 198436162 -29088416 - L2 LINE L2 -54 3259 3064 24 0 0 0 chr3 198441627 198441651 -29082927 + AT_rich Low_complexity Low_complexity 1 24 0 1330 193 29 11 chr3 198441970 198442250 -29082328 - AluJb SINE Alu -17 285 1 204 175 25 0 chr3 198442783 198442823 -29081755 + T-rich Low_complexity Low_complexity 3 43 0 212 59 29 0 chr3 198443420 198443454 -29081124 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 250 182 0 159 chr3 198443458 198443546 -29081032 + MIR SINE MIR 79 152 -110 2256 84 3 10 chr3 198443669 198443968 -29080610 - AluSp SINE Alu -16 297 1 441 365 51 5 chr3 198444990 198445204 -29079374 + MIR SINE MIR 10 233 -29 23 0 0 0 chr3 198445487 198445510 -29079068 + AT_rich Low_complexity Low_complexity 1 23 0 1195 295 80 30 chr3 198445580 198446269 -29078309 - Charlie7 DNA MER1_type -1889 723 1 266 370 65 30 chr3 198446302 198446502 -29078076 + L2 LINE L2 2707 2913 -401 297 282 97 32 chr3 198446646 198446770 -29077808 - LTR16A LTR ERVL -162 288 157 957 236 15 5 chr3 198447521 198447724 -29076854 - MER82 DNA MER2_type 0 653 449 221 362 67 9 chr3 198447779 198447884 -29076694 + MIR SINE MIR 31 141 -121 234 0 0 0 chr3 198447984 198448010 -29076568 + (CA)n Simple_repeat Simple_repeat 2 27 0 359 261 33 0 chr3 198448011 198448103 -29076475 - MER82 DNA MER2_type -557 96 2 238 299 107 62 chr3 198448471 198448648 -29075930 + L2 LINE L2 3128 3312 -1 29 0 0 0 chr3 198448792 198448821 -29075757 + AT_rich Low_complexity Low_complexity 1 29 0 311 262 55 56 chr3 198449268 198449486 -29075092 - L1ME3A LINE L1 -234 5936 5707 399 299 46 29 chr3 198449796 198449970 -29074608 + MIR SINE MIR 14 190 -72 29 70 0 0 chr3 198455254 198455311 -29069267 + AT_rich Low_complexity Low_complexity 1 57 0 235 242 44 181 chr3 198456241 198456423 -29068155 - MIR SINE MIR -49 213 57 480 266 163 77 chr3 198457408 198457758 -29066820 - L2 LINE L2 0 3313 2934 2101 283 163 38 chr3 198457760 198458962 -29065616 - L2 LINE L2 -579 2735 1384 357 315 146 6 chr3 198458970 198459135 -29065443 - MIR SINE MIR -6 256 69 1294 261 35 25 chr3 198460092 198460486 -29064092 - MLT1C LTR MaLR 0 467 70 1637 189 10 79 chr3 198460487 198460905 -29063673 - MLT1B LTR MaLR 0 390 2 321 333 65 0 chr3 198460977 198461100 -29063478 - MIR SINE MIR -76 186 56 22 0 0 0 chr3 198461455 198461477 -29063101 + AT_rich Low_complexity Low_complexity 1 22 0 204 231 0 0 chr3 198461740 198461779 -29062799 + T-rich Low_complexity Low_complexity 4 42 0 23 0 0 0 chr3 198462119 198462142 -29062436 + AT_rich Low_complexity Low_complexity 1 23 0 222 234 0 0 chr3 198462577 198462624 -29061954 + T-rich Low_complexity Low_complexity 3 49 0 21 0 0 0 chr3 198463526 198463547 -29061031 + AT_rich Low_complexity Low_complexity 1 21 0 268 336 21 7 chr3 198463681 198463824 -29060754 - L2 LINE L2 -20 3293 3149 851 314 93 36 chr3 198464462 198465175 -29059403 + L2 LINE L2 2553 3304 -9 1573 190 3 7 chr3 198465973 198466268 -29058310 - AluJo SINE Alu -7 305 12 825 247 0 0 chr3 198466709 198466887 -29057691 + MER45A DNA AcHobo 1 178 0 222 356 104 0 chr3 198467154 198467269 -29057309 - L2 LINE L2 -1 3271 3145 1048 262 36 0 chr3 198467288 198467536 -29057042 - MIR SINE MIR -1 261 5 272 314 74 80 chr3 198467822 198468160 -29056418 - L2 LINE L2 -530 2784 2449 267 329 123 32 chr3 198471289 198471566 -29053012 - L2 LINE L2 -337 2977 2676 308 302 77 15 chr3 198471868 198472025 -29052553 + MIR3 SINE MIR 32 201 -7 959 205 24 10 chr3 198473836 198474041 -29050537 + MER3 DNA MER1_type 2 209 0 381 138 0 0 chr3 198474898 198474963 -29049615 - L1MA9 LINE L1 0 6312 6248 2324 161 48 11 chr3 198474963 198475405 -29049173 - L1MA9 LINE L1 -283 6029 5572 32 35 0 18 chr3 198476453 198476489 -29048089 + AT_rich Low_complexity Low_complexity 1 37 -19 1965 121 0 0 chr3 198476489 198476754 -29047824 - AluSx SINE Alu -27 285 21 32 35 0 18 chr3 198476754 198476774 -29047804 + AT_rich Low_complexity Low_complexity 37 56 0 689 167 14 22 chr3 198477058 198477196 -29047382 - AluJo SINE Alu -175 137 1 25 31 0 0 chr3 198477252 198477284 -29047294 + AT_rich Low_complexity Low_complexity 1 32 0 211 184 0 0 chr3 198479210 198479248 -29045330 + (TG)n Simple_repeat Simple_repeat 2 39 0 237 33 0 0 chr3 198480618 198480648 -29043930 + (T)n Simple_repeat Simple_repeat 1 30 0 498 297 27 0 chr3 198480818 198480966 -29043612 - L2 LINE L2 -459 2855 2704 25 31 0 0 chr3 198482042 198482074 -29042504 + AT_rich Low_complexity Low_complexity 1 32 0 251 225 61 25 chr3 198484164 198484243 -29040335 - MIR SINE MIR -66 142 69 36 70 0 0 chr3 198486222 198486293 -29038285 + AT_rich Low_complexity Low_complexity 1 71 0 243 254 0 40 chr3 198487636 198487762 -29036816 + CT-rich Low_complexity Low_complexity 3 123 0 644 294 164 45 chr3 198488122 198489086 -29035492 - L1MC4 LINE L1 -41 8001 6882 1797 123 88 7 chr3 198489086 198489371 -29035207 - AluSx SINE Alu -4 308 1 644 294 164 45 chr3 198489371 198489537 -29035041 - L1MC4 LINE L1 -1160 6882 6737 971 235 14 23 chr3 198489546 198489763 -29034815 + MER58A DNA MER1_type 2 216 -8 258 32 0 0 chr3 198489794 198489825 -29034753 + (TC)n Simple_repeat Simple_repeat 1 31 0 2636 295 88 29 chr3 198489857 198491284 -29033294 + L1ME1 LINE L1 37 1546 -4850 582 180 0 0 chr3 198491537 198491626 -29032952 - FLAM_A SINE Alu -26 116 28 235 287 93 19 chr3 198493978 198494086 -29030492 + L1ME1 LINE L1 1577 1692 -4704 481 329 6 6 chr3 198494089 198494256 -29030322 - L1MEc LINE L1 -5760 636 470 941 142 6 0 chr3 198494261 198494423 -29030155 + L1MA4 LINE L1 6132 6294 -6 2999 232 40 28 chr3 198494423 198495920 -29028658 + L1ME1 LINE L1 2042 4803 -1412 2005 245 111 22 chr3 198495920 198496343 -29028235 + L1ME1 LINE L1 5189 5573 -662 2166 144 0 0 chr3 198496343 198496655 -29027923 - AluSx SINE Alu 0 312 1 2005 245 111 22 chr3 198496655 198497107 -29027471 + L1ME1 LINE L1 5573 6146 -89 406 191 0 0 chr3 198497204 198497293 -29027285 + L1MA10 LINE L1 6244 6332 -2 544 258 125 85 chr3 198497794 198498371 -29026207 - L1MC4a LINE L1 -1810 5998 5399 7178 162 24 29 chr3 198498713 198499573 -29025005 - L1PB4 LINE L1 0 6156 5293 2124 123 7 3 chr3 198499573 198499874 -29024704 - AluSx SINE Alu -10 302 1 7178 162 24 29 chr3 198499874 198501328 -29023250 - L1PB4 LINE L1 -863 5293 3844 944 242 74 103 chr3 198501455 198501930 -29022648 + MLT1G1 LTR MaLR 89 549 -46 340 309 23 3 chr3 198502726 198502902 -29021676 + MIR SINE MIR 25 257 -5 22 0 0 0 chr3 198503531 198503553 -29021025 + AT_rich Low_complexity Low_complexity 1 22 0 2677 83 0 50 chr3 198503612 198504009 -29020569 - MER51B LTR ERV1 0 377 1 252 320 109 16 chr3 198504450 198504578 -29020000 + MER5B DNA MER1_type 26 165 -13 250 237 11 65 chr3 198504713 198504806 -29019772 + MIR SINE MIR 125 212 -50 831 264 63 28 chr3 198504990 198505308 -29019270 - HAL1 LINE L1 -2118 389 61 208 91 45 0 chr3 198505531 198505575 -29019003 + GA-rich Low_complexity Low_complexity 4 49 0 260 224 41 41 chr3 198506602 198506700 -29017878 + Charlie7 DNA MER1_type 2473 2570 -42 218 298 137 95 chr3 198557545 198557713 -28966865 - MIR SINE MIR -56 206 32 394 200 0 12 chr3 198558335 198558420 -28966158 + Charlie4 DNA MER1_type 42 125 -1836 3909 44 19 0 chr3 198558546 198559025 -28965553 - L1PA5 LINE L1 -115 6039 5552 2044 125 3 0 chr3 198559043 198559331 -28965247 + AluSx SINE Alu 1 289 -23 1231 288 102 33 chr3 198559369 198559917 -28964661 + L2 LINE L2 2181 2766 -548 886 235 150 0 chr3 198559976 198560189 -28964389 + HsTC2 DNA Tc2 83 327 -1571 500 261 33 6 chr3 198560186 198560366 -28964212 + HsTC2 DNA Tc2 1714 1898 0 * 640 332 24 21 chr3 198560366 198560713 -28963865 + L2 LINE L2 2770 3123 -190 266 208 19 0 chr3 198560758 198560811 -28963767 + L2 LINE L2 3219 3272 0 369 232 61 127 chr3 198560821 198561002 -28963576 - MIR SINE MIR -78 184 16 2132 114 10 0 chr3 198561078 198561385 -28963193 + AluSg SINE Alu 1 310 0 194 345 23 46 chr3 198562584 198562671 -28961907 + L2 LINE L2 2930 3014 -258 245 337 11 33 chr3 198563382 198563474 -28961104 - MER5A DNA MER1_type -39 150 61 1906 169 3 0 chr3 198563481 198563788 -28960790 - AluJo SINE Alu -4 308 1 253 268 99 0 chr3 198565084 198565155 -28959423 - MER112 DNA MER1_type -3 257 180 2575 147 15 4 chr3 198565155 198565610 -28958968 + L1MA4 LINE L1 5836 6295 -5 427 47 0 0 chr3 198565755 198565819 -28958759 - L1MA3 LINE L1 0 6305 6242 253 308 39 19 chr3 198568885 198568989 -28955589 + L2 LINE L2 2938 3043 -229 418 274 46 7 chr3 198569205 198569358 -28955220 - MIR SINE MIR 0 262 104 447 311 108 0 chr3 198569836 198570003 -28954575 - MIR SINE MIR -4 258 74 29 47 0 0 chr3 198570044 198570087 -28954491 + AT_rich Low_complexity Low_complexity 1 43 0 799 271 18 23 chr3 198570959 198571180 -28953398 - MIR SINE MIR -36 226 7 372 351 35 18 chr3 198571264 198571435 -28953143 + MIR SINE MIR 35 208 -54 21 0 0 0 chr3 198572131 198572152 -28952426 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 198572947 198572968 -28951610 + AT_rich Low_complexity Low_complexity 1 21 0 2311 104 0 3 chr3 198573794 198574102 -28950476 - AluSq SINE Alu -6 307 1 550 335 36 36 chr3 198574222 198574526 -28950052 + MLT1I LTR MaLR 106 409 0 1415 337 57 22 chr3 198574859 198575455 -28949123 + MER115 DNA AcHobo 1 617 -76 22 0 0 0 chr3 198575538 198575560 -28949018 + AT_rich Low_complexity Low_complexity 1 22 0 182 173 0 19 chr3 198577641 198577693 -28946885 + CT-rich Low_complexity Low_complexity 2 52 0 414 255 111 39 chr3 198577746 198577899 -28946679 + MER5A DNA MER1_type 26 189 0 191 292 0 0 chr3 198578807 198578855 -28945723 - MIR SINE MIR -63 145 98 21 0 0 0 chr3 198579703 198579724 -28944854 + AT_rich Low_complexity Low_complexity 1 21 0 264 325 170 19 chr3 198580376 198580582 -28943996 + MIR SINE MIR 16 252 -10 368 329 48 107 chr3 198580617 198580906 -28943672 - L2 LINE L2 -16 3256 2985 21 0 0 0 chr3 198581118 198581139 -28943439 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 198581710 198581733 -28942845 + AT_rich Low_complexity Low_complexity 1 23 0 378 0 0 0 chr3 198582278 198582320 -28942258 + (TG)n Simple_repeat Simple_repeat 2 43 0 258 220 0 0 chr3 198582320 198582379 -28942199 + (CATATA)n Simple_repeat Simple_repeat 2 60 0 25 31 0 0 chr3 198582389 198582421 -28942157 + AT_rich Low_complexity Low_complexity 1 32 0 2140 92 0 34 chr3 198582517 198582831 -28941747 - AluSx SINE Alu 0 304 1 2628 14 0 0 chr3 198583007 198583298 -28941280 + AluYa5 SINE Alu 21 311 0 22 0 0 0 chr3 198583502 198583524 -28941054 + AT_rich Low_complexity Low_complexity 1 22 0 356 178 116 23 chr3 198585949 198586078 -28938500 + Charlie4 DNA MER1_type 1818 1958 -3 2171 143 10 20 chr3 198586165 198586558 -28938020 - MLT1B LTR MaLR 0 390 2 21 0 0 0 chr3 198586768 198586789 -28937789 + AT_rich Low_complexity Low_complexity 1 21 0 2076 138 0 0 chr3 198586959 198587257 -28937321 + AluSx SINE Alu 1 298 -14 259 270 0 0 chr3 198588807 198588870 -28935708 - L2 LINE L2 -5 3267 3205 1723 237 101 11 chr3 198589056 198589491 -28935087 - MER21B LTR ERV1 -371 492 19 303 229 0 29 chr3 198589525 198589595 -28934983 - MER21B LTR ERV1 -795 68 1 376 206 69 92 chr3 198589598 198589729 -28934849 - L1MDa LINE L1 -4332 2208 2081 589 271 37 43 chr3 198590733 198591198 -28933380 + L1M4 LINE L1 2805 3266 -2880 260 209 0 60 chr3 198591407 198591474 -28933104 - MIR3 SINE MIR -36 172 110 337 310 109 17 chr3 198594686 198594860 -28929718 + MIR SINE MIR 47 236 -26 21 0 0 0 chr3 198595291 198595312 -28929266 + AT_rich Low_complexity Low_complexity 1 21 0 301 191 18 0 chr3 198595803 198595913 -28928665 + (TA)n Simple_repeat Simple_repeat 1 112 0 190 234 31 31 chr3 198595913 198595977 -28928601 + MIR SINE MIR 194 257 -5 1847 161 47 0 chr3 198596307 198596605 -28927973 - AluSx SINE Alu 0 312 1 424 278 0 46 chr3 198597842 198597950 -28926628 + MIR3 SINE MIR 87 189 -19 635 308 68 5 chr3 198600264 198600485 -28924093 - MIR SINE MIR -10 252 18 1372 293 185 14 chr3 198600815 198601615 -28922963 + L2 LINE L2 739 1675 -1639 2432 285 54 38 chr3 198601615 198602434 -28922144 + L2 LINE L2 2125 2930 -383 383 0 0 21 chr3 198602434 198602482 -28922096 + (TATAA)n Simple_repeat Simple_repeat 2 48 0 2432 285 54 38 chr3 198602482 198602530 -28922048 + L2 LINE L2 2930 2976 -337 1667 165 19 35 chr3 198602530 198602845 -28921733 - AluJb SINE Alu 0 312 3 2432 285 54 38 chr3 198602845 198603151 -28921427 + L2 LINE L2 2976 3313 0 32 67 0 0 chr3 198604764 198604824 -28919754 + AT_rich Low_complexity Low_complexity 1 60 0 790 262 79 8 chr3 198605010 198605277 -28919301 + L1MC4 LINE L1 6653 6938 -1104 506 257 62 99 chr3 198605853 198606447 -28918131 + L1MC5 LINE L1 7282 7851 -110 1490 191 17 89 chr3 198606447 198606850 -28917728 + MLT1A2 LTR MaLR 1 374 0 506 257 62 99 chr3 198606850 198606912 -28917666 + L1MC5 LINE L1 7851 7914 -47 303 28 0 0 chr3 198607066 198607102 -28917476 + (CA)n Simple_repeat Simple_repeat 2 37 0 191 323 36 66 chr3 198607405 198607572 -28917006 - MIR SINE MIR -56 206 45 321 349 8 0 chr3 198610024 198610150 -28914428 + L2 LINE L2 3187 3313 0 2366 85 3 0 chr3 198610905 198611211 -28913367 - AluSc SINE Alu -2 307 1 399 233 89 48 chr3 198611382 198611528 -28913050 - MIR SINE MIR -105 157 6 2194 134 5 27 chr3 198613437 198613809 -28910769 - THE1B LTR MaLR 0 364 1 11500 94 6 4 chr3 198613809 198615385 -28909193 - THE1B-int LTR MaLR 0 1580 1 2363 121 5 27 chr3 198615385 198615757 -28908821 - THE1B LTR MaLR 0 364 1 218 254 18 0 chr3 198616271 198616326 -28908252 - L2 LINE L2 -2 3311 3256 768 99 0 0 chr3 198617036 198617147 -28907431 + (TAGA)n Simple_repeat Simple_repeat 2 112 0 258 225 62 25 chr3 198617174 198617254 -28907324 - MIR3 SINE MIR -8 200 118 21 0 0 0 chr3 198617345 198617366 -28907212 + AT_rich Low_complexity Low_complexity 1 21 0 225 219 30 134 chr3 198617397 198617443 -28907135 + L2 LINE L2 3167 3216 -97 771 173 24 0 chr3 198617443 198617570 -28907008 - FLAM_A SINE Alu -3 130 1 225 219 30 134 chr3 198617570 198617687 -28906891 + L2 LINE L2 3216 3313 0 216 321 0 0 chr3 198618175 198618228 -28906350 - MIR SINE MIR -121 141 89 36 33 0 16 chr3 198619038 198619076 -28905502 + AT_rich Low_complexity Low_complexity 1 39 -21 1829 138 0 0 chr3 198619076 198619337 -28905241 + AluSx SINE Alu 36 296 -16 36 33 0 16 chr3 198619337 198619359 -28905219 + AT_rich Low_complexity Low_complexity 39 60 0 594 273 91 23 chr3 198619486 198619706 -28904872 + MIR SINE MIR 12 246 -16 211 310 139 8 chr3 198619718 198619847 -28904731 - MIR SINE MIR -68 194 49 323 282 38 15 chr3 198621468 198621599 -28902979 - L1ME4a LINE L1 -13 6108 5975 1575 183 13 35 chr3 198622178 198622495 -28902083 - AluJb SINE Alu -2 310 1 349 199 49 0 chr3 198623432 198623527 -28901051 - MER69 DNA AcHobo -10 2516 2418 2795 10 0 0 chr3 198623531 198623837 -28900741 + AluY SINE Alu 6 311 0 22 35 0 0 chr3 198625298 198625327 -28899251 + AT_rich Low_complexity Low_complexity 1 29 0 213 156 89 0 chr3 198625497 198625542 -28899036 - L2 LINE L2 -1136 2178 2130 248 279 15 15 chr3 198625543 198625611 -28898967 + L2 LINE L2 3234 3301 -12 * 267 157 0 59 chr3 198625569 198625620 -28898958 + MIR SINE MIR 215 262 0 1647 261 50 26 chr3 198625718 198626181 -28898397 - MLT1E LTR MaLR 0 593 120 259 268 49 34 chr3 198626404 198626525 -28898053 + MIR SINE MIR 21 143 -65 204 125 0 0 chr3 198627060 198627092 -28897486 + (GAA)n Simple_repeat Simple_repeat 2 33 0 205 204 0 23 chr3 198627125 198627169 -28897409 + GA-rich Low_complexity Low_complexity 2 44 0 1694 203 53 40 chr3 198628617 198629071 -28895507 + MLT1C LTR MaLR 6 465 -2 322 335 126 6 chr3 198629090 198629272 -28895306 - MIR SINE MIR -3 259 56 281 324 0 0 chr3 198630161 198630229 -28894349 - L2 LINE L2 -12 3301 3234 28 71 0 0 chr3 198630250 198630306 -28894272 + AT_rich Low_complexity Low_complexity 1 56 0 959 157 169 24 chr3 198630482 198630737 -28893841 - MER33 DNA MER1_type -30 294 3 289 273 102 31 chr3 198631575 198631703 -28892875 + MIR SINE MIR 122 258 -4 25 31 0 0 chr3 198632994 198633026 -28891552 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 198634170 198634191 -28890387 + AT_rich Low_complexity Low_complexity 1 21 0 1916 160 0 22 chr3 198634502 198634821 -28889757 - AluJo SINE Alu 0 312 1 21 0 0 0 chr3 198636042 198636063 -28888515 + AT_rich Low_complexity Low_complexity 1 21 0 212 245 19 0 chr3 198636330 198636383 -28888195 + CT-rich Low_complexity Low_complexity 4 57 0 4253 198 27 11 chr3 198637379 198638980 -28885598 - L1MB8 LINE L1 -9 6169 4545 282 385 30 6 chr3 198639242 198639411 -28885167 - L2 LINE L2 -374 2940 2768 359 270 184 60 chr3 198641108 198641341 -28883237 + MIR SINE MIR 1 262 0 415 281 107 58 chr3 198641413 198641723 -28882855 + L1MC/D LINE L1 4493 4817 -1329 1456 187 66 0 chr3 198642117 198642406 -28882172 + AluJb SINE Alu 1 308 -4 417 300 135 24 chr3 198642487 198642947 -28881631 + L1MC/D LINE L1 5296 5806 -2002 22 0 0 0 chr3 198643149 198643171 -28881407 + AT_rich Low_complexity Low_complexity 1 22 0 1370 207 26 45 chr3 198643654 198643963 -28880615 + AluJb SINE Alu 1 303 -9 961 238 34 59 chr3 198644312 198644699 -28879879 + MER20B DNA MER1_type 353 729 -54 1236 45 0 0 chr3 198644700 198644854 -28879724 + L1MA2 LINE L1 5728 5881 -423 21 0 0 0 chr3 198645273 198645294 -28879284 + AT_rich Low_complexity Low_complexity 1 21 0 1336 144 40 18 chr3 198646185 198646327 -28878251 + L1MA9 LINE L1 6008 6145 -167 342 45 0 0 chr3 198646327 198646371 -28878207 + (CA)n Simple_repeat Simple_repeat 2 45 0 1336 144 40 18 chr3 198646371 198646505 -28878073 + L1MA9 LINE L1 6145 6290 -22 963 290 191 25 chr3 198646559 198647473 -28877105 + L2 LINE L2 2238 3308 -5 2034 159 174 12 chr3 198647846 198648248 -28876330 + MLT2B2 LTR ERVL 2 468 -47 324 0 0 0 chr3 198648251 198648287 -28876291 + (CA)n Simple_repeat Simple_repeat 1 36 0 187 291 78 85 chr3 198648408 198648549 -28876029 + L2 LINE L2 2928 3067 -205 489 353 95 45 chr3 198648611 198649121 -28875457 + L2 LINE L2 2776 3310 -3 225 222 37 0 chr3 198649481 198649535 -28875043 + MLT1J2 LTR MaLR 71 126 -324 301 261 23 0 chr3 198649733 198649821 -28874757 + MLT1I LTR MaLR 318 407 -2 21 57 0 0 chr3 198650615 198650650 -28873928 + AT_rich Low_complexity Low_complexity 1 35 0 1136 232 71 32 chr3 198651483 198651823 -28872755 + Charlie7 DNA MER1_type 315 667 -1945 277 289 68 62 chr3 198652423 198652745 -28871833 - L1MC4a LINE L1 -1745 6063 5740 341 355 100 29 chr3 198652822 198653171 -28871407 - L1MC4a LINE L1 -522 5640 5267 210 192 19 0 chr3 198653179 198653231 -28871347 + T-rich Low_complexity Low_complexity 4 56 0 21 0 0 0 chr3 198653747 198653768 -28870810 + AT_rich Low_complexity Low_complexity 1 21 0 315 0 0 0 chr3 198656335 198656370 -28868208 + (CA)n Simple_repeat Simple_repeat 2 36 0 238 253 137 42 chr3 198656701 198656796 -28867782 - L2 LINE L2 0 3313 3210 254 264 0 47 chr3 198657078 198657184 -28867394 + GA-rich Low_complexity Low_complexity 2 102 0 603 318 196 25 chr3 198657506 198658109 -28866469 + L3 LINE CR1 852 1557 -20 21 0 0 0 chr3 198658169 198658190 -28866388 + AT_rich Low_complexity Low_complexity 1 21 0 441 81 0 0 chr3 198658412 198658474 -28866104 + (TG)n Simple_repeat Simple_repeat 1 62 0 2260 111 0 0 chr3 198659449 198659756 -28864822 - AluSx SINE Alu -5 307 1 195 188 0 0 chr3 198659820 198659868 -28864710 + (TAG)n Simple_repeat Simple_repeat 1 48 0 227 232 192 8 chr3 198659884 198660009 -28864569 - MIR SINE MIR -13 249 102 21 0 0 0 chr3 198660760 198660781 -28863797 + AT_rich Low_complexity Low_complexity 1 21 0 28 29 0 0 chr3 198660854 198660889 -28863689 + AT_rich Low_complexity Low_complexity 1 35 0 28 48 0 0 chr3 198661331 198661373 -28863205 + AT_rich Low_complexity Low_complexity 1 42 0 22 0 0 0 chr3 198661514 198661536 -28863042 + AT_rich Low_complexity Low_complexity 1 22 0 1476 150 31 19 chr3 198662156 198662416 -28862162 - AluJb SINE Alu -29 283 21 200 295 199 60 chr3 198662546 198662827 -28861751 + L2 LINE L2 2657 2976 -338 189 156 200 0 chr3 198663477 198663522 -28861056 - MIR3 SINE MIR -32 176 123 180 191 170 0 chr3 198663667 198663714 -28860864 - MIR SINE MIR -68 140 86 22 56 0 0 chr3 198663783 198663819 -28860759 + AT_rich Low_complexity Low_complexity 1 36 0 374 376 64 8 chr3 198663973 198664207 -28860371 + MIR SINE MIR 4 250 -12 281 302 40 16 chr3 198664344 198664470 -28860108 + L2 LINE L2 2933 3061 -211 23 0 0 0 chr3 198665372 198665395 -28859183 + AT_rich Low_complexity Low_complexity 1 23 0 1999 130 0 0 chr3 198665724 198666008 -28858570 + AluSq SINE Alu 1 284 -29 525 317 145 62 chr3 198666999 198667681 -28856897 - L2 LINE L2 -5 3308 2554 25 51 0 0 chr3 198668632 198668671 -28855907 + AT_rich Low_complexity Low_complexity 1 39 0 266 332 157 28 chr3 198668765 198668982 -28855596 + MIR SINE MIR 18 262 0 514 304 88 32 chr3 198670402 198670619 -28853959 + MIR SINE MIR 13 241 -21 1346 127 48 0 chr3 198670766 198670994 -28853584 - L1MA6 LINE L1 -2 6298 6060 519 95 0 0 chr3 198670994 198671068 -28853510 + (TCTA)n Simple_repeat Simple_repeat 3 76 0 680 156 0 0 chr3 198671080 198671189 -28853389 - L1MA6 LINE L1 -532 5768 5660 21 36 0 0 chr3 198671666 198671694 -28852884 + AT_rich Low_complexity Low_complexity 1 28 0 2364 44 0 14 chr3 198673520 198673817 -28850761 + AluY SINE Alu 1 293 -18 226 319 25 0 chr3 198673975 198674094 -28850484 - L1MC/D LINE L1 -1874 5934 5813 392 240 86 109 chr3 198675434 198675772 -28848806 + L1MC4a LINE L1 5835 6164 -1644 266 274 33 85 chr3 198675832 198675985 -28848593 + MIR3 SINE MIR 22 166 -42 1940 138 0 0 chr3 198676142 198676425 -28848153 - AluSx SINE Alu -12 300 18 313 262 143 8 chr3 198676602 198676728 -28847850 - MIR SINE MIR -10 252 110 350 180 10 0 chr3 198677070 198677170 -28847408 + GA-rich Low_complexity Low_complexity 2 102 0 234 279 13 0 chr3 198678178 198678257 -28846321 + (TA)n Simple_repeat Simple_repeat 1 80 0 240 282 109 36 chr3 198678582 198678692 -28845886 + MER5A DNA MER1_type 71 188 -1 2196 99 3 3 chr3 198679322 198679626 -28844952 + AluSq SINE Alu 1 304 -9 222 37 0 0 chr3 198680734 198680761 -28843817 + (A)n Simple_repeat Simple_repeat 1 27 0 643 302 4 36 chr3 198680976 198681201 -28843377 - MIR SINE MIR -10 252 35 997 166 17 17 chr3 198681202 198681377 -28843201 + FAM SINE Alu 1 175 0 2084 128 3 10 chr3 198681443 198681755 -28842823 + AluSg SINE Alu 1 310 0 201 74 0 0 chr3 198681755 198681782 -28842796 + (GGAA)n Simple_repeat Simple_repeat 2 28 0 321 283 6 98 chr3 198681962 198682175 -28842403 - MIR SINE MIR -51 211 14 305 176 29 0 chr3 198682677 198682745 -28841833 + (TATG)n Simple_repeat Simple_repeat 2 71 0 365 377 126 0 chr3 198682983 198683174 -28841404 - MIR SINE MIR -30 232 18 180 135 0 0 chr3 198683199 198683236 -28841342 + (TG)n Simple_repeat Simple_repeat 2 38 0 289 259 19 108 chr3 198683317 198683475 -28841103 - MIR SINE MIR -91 171 28 26 30 0 0 chr3 198684077 198684110 -28840468 + AT_rich Low_complexity Low_complexity 1 33 0 529 302 24 0 chr3 198684292 198684461 -28840117 + MIR3 SINE MIR 29 201 -7 371 332 87 64 chr3 198686355 198686894 -28837684 + L2 LINE L2 2692 3217 -55 214 94 0 38 chr3 198690194 198690247 -28834331 + (CAAAAA)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr3 198690959 198690980 -28833598 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 198692529 198692552 -28832026 + AT_rich Low_complexity Low_complexity 1 23 0 29 0 0 0 chr3 198693040 198693069 -28831509 + AT_rich Low_complexity Low_complexity 1 29 0 1869 119 20 14 chr3 198695372 198695667 -28828911 - AluSq SINE Alu -15 298 2 32 67 0 0 chr3 198695763 198695823 -28828755 + AT_rich Low_complexity Low_complexity 1 60 0 1551 164 46 7 chr3 198695864 198696145 -28828433 + AluSx SINE Alu 3 294 -18 25 0 0 0 chr3 198696973 198696998 -28827580 + AT_rich Low_complexity Low_complexity 1 25 0 2133 116 3 0 chr3 198697272 198697565 -28827013 + AluSq SINE Alu 1 294 -19 21 57 0 0 chr3 198698039 198698074 -28826504 + AT_rich Low_complexity Low_complexity 1 35 0 234 128 0 0 chr3 198699208 198699247 -28825331 + (TTTTG)n Simple_repeat Simple_repeat 3 41 0 21 57 0 0 chr3 198701481 198701516 -28823062 + AT_rich Low_complexity Low_complexity 1 35 0 2163 118 3 10 chr3 198702605 198702918 -28821660 + AluSq SINE Alu 1 311 -2 1413 181 90 11 chr3 198703769 198704035 -28820543 + AluJb SINE Alu 1 287 -25 330 194 0 0 chr3 198704065 198704137 -28820441 + (TA)n Simple_repeat Simple_repeat 1 72 0 24 32 0 0 chr3 198704299 198704330 -28820248 + AT_rich Low_complexity Low_complexity 1 31 0 753 171 4 0 chr3 198705326 198705491 -28819087 + GSATX Satellite centromeric 1 165 -91 180 344 31 0 chr3 198706228 198706292 -28818286 - L2 LINE L2 -190 3082 3017 456 126 48 19 chr3 198706296 198706399 -28818179 + T-rich Low_complexity Low_complexity 4 109 0 1123 324 79 20 chr3 198706405 198706445 -28818133 + L2 LINE L2 1813 1849 -1465 2079 88 49 0 chr3 198706445 198706730 -28817848 - AluY SINE Alu -12 299 1 1123 324 79 20 chr3 198706730 198707284 -28817294 + L2 LINE L2 1849 2442 -872 71 85 0 0 chr3 198707299 198707475 -28817103 + AT_rich Low_complexity Low_complexity 1 176 0 572 269 52 52 chr3 198707537 198707749 -28816829 - MIR SINE MIR 0 262 51 450 323 125 32 chr3 198707851 198708328 -28816250 + L2 LINE L2 2683 3191 -122 223 369 131 0 chr3 198708548 198708678 -28815900 - L2 LINE L2 -470 2844 2698 183 100 0 0 chr3 198709411 198709441 -28815137 + (TTCA)n Simple_repeat Simple_repeat 2 31 0 260 288 83 38 chr3 198709442 198709574 -28815004 - L2 LINE L2 -13 3300 3163 1591 59 41 9 chr3 198711306 198711527 -28813051 + AluY SINE Alu 79 306 -5 1489 196 55 15 chr3 198711789 198712115 -28812463 - MER44D DNA MER2_type 0 609 1 40 37 0 0 chr3 198714583 198714637 -28809941 + AT_rich Low_complexity Low_complexity 1 54 0 21 36 0 0 chr3 198715902 198715930 -28808648 + AT_rich Low_complexity Low_complexity 1 28 0 271 349 18 9 chr3 198716323 198716432 -28808146 - MIR3 SINE MIR -8 200 91 695 225 0 0 chr3 198716639 198716781 -28807797 + FLAM_A SINE Alu 1 142 0 200 335 131 44 chr3 198716817 198717023 -28807555 + L2 LINE L2 2734 2957 -357 196 231 44 99 chr3 198717161 198717252 -28807326 + L2 LINE L2 3152 3237 -76 1316 139 79 68 chr3 198717278 198717544 -28807034 + AluJo SINE Alu 26 294 -18 345 24 0 0 chr3 198717552 198717594 -28806984 + (CA)n Simple_repeat Simple_repeat 2 43 0 237 178 0 0 chr3 198717608 198717653 -28806925 + (TATATG)n Simple_repeat Simple_repeat 6 50 0 194 327 0 0 chr3 198719117 198719172 -28805406 + L2 LINE L2 3213 3267 -5 197 237 0 0 chr3 198719229 198719267 -28805311 - L2 LINE L2 -11 3302 3265 2166 129 0 0 chr3 198719374 198719677 -28804901 - AluSx SINE Alu -9 303 1 235 128 266 9 chr3 198720187 198720296 -28804282 + Charlie7 DNA MER1_type 2397 2533 -79 709 206 11 27 chr3 198720383 198720567 -28804011 + Charlie5 DNA MER1_type 2 182 -2430 903 236 44 22 chr3 198720575 198720846 -28803732 + Charlie5 DNA MER1_type 2348 2624 0 825 169 116 11 chr3 198721436 198721657 -28802921 - Tigger4(Zombi) DNA MER2_type -1 2730 2 34 0 0 0 chr3 198722268 198722302 -28802276 + AT_rich Low_complexity Low_complexity 1 34 0 823 112 0 0 chr3 198723526 198723642 -28800936 - AluSp/q SINE Alu -2 311 196 719 284 16 62 chr3 198724227 198724484 -28800094 + MIR SINE MIR 18 262 0 23 92 0 0 chr3 198775214 198775279 -28749299 + AT_rich Low_complexity Low_complexity 1 65 0 342 0 0 0 chr3 198777327 198777365 -28747213 + (CA)n Simple_repeat Simple_repeat 2 39 0 327 25 0 0 chr3 198778366 198778406 -28746172 + (GA)n Simple_repeat Simple_repeat 2 41 0 270 0 0 0 chr3 198778405 198778435 -28746143 + (TG)n Simple_repeat Simple_repeat 2 31 0 * 261 333 52 0 chr3 198778692 198778788 -28745790 + MIR SINE MIR 39 139 -123 346 303 62 14 chr3 198778932 198779077 -28745501 + MIR SINE MIR 23 174 -88 463 282 82 24 chr3 198779741 198779903 -28744675 - L1ME4a LINE L1 -2 6119 5968 204 40 0 0 chr3 198779903 198779928 -28744650 + (TG)n Simple_repeat Simple_repeat 2 26 0 463 282 82 24 chr3 198779928 198780056 -28744522 - L1ME4a LINE L1 -153 5968 5812 358 296 163 25 chr3 198780076 198780444 -28744134 - L1ME4a LINE L1 -2027 5781 5363 1643 107 148 11 chr3 198780648 198780911 -28743667 - AluSg1 SINE Alu -10 299 1 325 238 0 25 chr3 198780961 198781041 -28743537 - MIR SINE MIR 0 262 185 264 303 0 0 chr3 198781055 198781121 -28743457 + MIR SINE MIR 197 262 0 446 375 52 8 chr3 198781682 198781930 -28742648 + MIR SINE MIR 1 259 -3 226 329 19 44 chr3 198782126 198782284 -28742294 - L2 LINE L2 -1692 1622 1469 343 61 20 0 chr3 198783034 198783083 -28741495 + MADE1 DNA Mariner 2 51 -29 2001 124 17 3 chr3 198783176 198783466 -28741112 + AluSx SINE Alu 3 296 -16 2072 121 0 0 chr3 198783501 198783810 -28740768 - AluSx SINE Alu 0 309 1 2344 101 0 0 chr3 198784098 198784404 -28740174 - AluSg SINE Alu -4 306 1 765 318 143 18 chr3 198784880 198785326 -28739252 + MLT1K LTR MaLR 85 586 -2 2253 103 0 7 chr3 198785551 198785852 -28738726 - AluSq SINE Alu -14 299 1 388 262 16 49 chr3 198786269 198786291 -28738287 - MER94 DNA DNA -14 120 99 1696 151 44 4 chr3 198786291 198786616 -28737962 - AluJo SINE Alu 0 336 1 388 262 16 49 chr3 198786616 198786714 -28737864 - MER94 DNA DNA -35 99 3 192 77 0 0 chr3 198787150 198787176 -28737402 + (TTA)n Simple_repeat Simple_repeat 2 27 0 243 103 0 0 chr3 198788056 198788095 -28736483 + (TG)n Simple_repeat Simple_repeat 2 40 0 210 281 18 0 chr3 198789947 198790004 -28734574 + L2 LINE L2 3211 3268 -4 396 295 94 7 chr3 198790494 198790643 -28733935 - MIR SINE MIR -54 208 47 1709 181 10 7 chr3 198791465 198791758 -28732820 - AluJb SINE Alu -15 297 4 221 180 20 0 chr3 198792490 198792540 -28732038 + (TA)n Simple_repeat Simple_repeat 2 52 0 444 37 0 0 chr3 198792540 198792594 -28731984 + (CA)n Simple_repeat Simple_repeat 2 55 0 202 91 0 45 chr3 198792982 198793026 -28731552 + (TA)n Simple_repeat Simple_repeat 2 43 0 2449 88 0 0 chr3 198794315 198794623 -28729955 + AluSp SINE Alu 1 308 -5 189 0 0 0 chr3 198794888 198794909 -28729669 + (CAAAAA)n Simple_repeat Simple_repeat 3 23 0 21 82 0 0 chr3 198794988 198795037 -28729541 + AT_rich Low_complexity Low_complexity 1 49 0 862 271 71 48 chr3 198795860 198796255 -28728323 - MLT1I LTR MaLR -1 408 5 315 298 154 0 chr3 198796285 198796389 -28728189 + L2 LINE L2 3180 3299 -14 21 36 0 0 chr3 198798626 198798654 -28725924 + AT_rich Low_complexity Low_complexity 1 28 0 2060 130 3 19 chr3 198798660 198798976 -28725602 - AluSq SINE Alu -2 311 1 546 220 17 70 chr3 198798977 198799206 -28725372 - MLT1D LTR MaLR -60 463 317 375 143 0 0 chr3 198799298 198799354 -28725224 - MLT1D LTR MaLR -404 101 46 2142 120 3 3 chr3 198799730 198800029 -28724549 - AluSx SINE Alu -13 299 1 1195 251 15 29 chr3 198800699 198801041 -28723537 - MER58B DNA MER1_type -2 339 3 318 298 48 19 chr3 198801909 198802013 -28722565 - MIR3 SINE MIR -53 155 49 244 268 0 18 chr3 198802126 198802182 -28722396 + polypyrimidine Low_complexity Low_complexity 3 57 0 289 208 28 14 chr3 198802319 198802391 -28722187 - MER52A LTR ERV1 -1029 726 654 297 198 267 0 chr3 198803229 198803315 -28721263 + MLT1J LTR MaLR 14 122 -389 8289 178 114 10 chr3 198803493 198805083 -28719495 - MER52A LTR ERV1 0 1755 1 381 268 84 28 chr3 198805104 198805246 -28719332 + MLT1J LTR MaLR 301 450 -61 358 306 116 43 chr3 198805258 198805559 -28719019 - L1M4 LINE L1 -2220 3926 3604 259 196 10 41 chr3 198806660 198806757 -28717821 + (TTA)n Simple_repeat Simple_repeat 3 96 0 22 0 0 0 chr3 198808454 198808476 -28716102 + AT_rich Low_complexity Low_complexity 1 22 0 1462 271 62 52 chr3 198808889 198808927 -28715651 + L2 LINE L2 2404 2440 -873 380 66 0 33 chr3 198808927 198808988 -28715590 + (CAAAA)n Simple_repeat Simple_repeat 2 60 0 1462 271 62 52 chr3 198808988 198809840 -28714738 + L2 LINE L2 2440 3309 -4 250 205 115 13 chr3 198810028 198810106 -28714472 - MIR SINE MIR -96 166 81 2329 99 6 3 chr3 198810972 198811284 -28713294 + AluSp SINE Alu 1 313 0 2079 118 17 3 chr3 198812006 198812303 -28712275 + AluSx SINE Alu 1 301 -11 183 240 80 20 chr3 198812430 198812480 -28712098 - L2 LINE L2 -1 3271 3219 * 257 329 18 59 chr3 198812448 198812618 -28711960 - MIR SINE MIR -16 246 84 252 232 116 0 chr3 198812720 198812789 -28711789 + MIR SINE MIR 63 139 -123 252 170 0 0 chr3 198813198 198813251 -28711327 + (TG)n Simple_repeat Simple_repeat 2 54 0 2242 114 3 3 chr3 198813615 198813922 -28710656 + AluSg SINE Alu 1 307 -3 27 62 0 0 chr3 198814806 198814854 -28709724 + AT_rich Low_complexity Low_complexity 1 48 0 248 146 21 21 chr3 198815107 198815155 -28709423 + L1ME3A LINE L1 6025 6072 -98 24 0 0 0 chr3 198815177 198815201 -28709377 + AT_rich Low_complexity Low_complexity 1 24 0 341 220 185 6 chr3 198816150 198816323 -28708255 - Charlie2 DNA MER1_type -1 2861 2658 781 206 7 0 chr3 198816323 198816478 -28708100 - AluJb SINE Alu -1 311 156 2224 225 76 19 chr3 198816479 198817230 -28707348 - Charlie2 DNA MER1_type -193 2669 1876 22 0 0 0 chr3 198818811 198818833 -28705745 + AT_rich Low_complexity Low_complexity 1 22 0 450 340 69 30 chr3 198819193 198819425 -28705153 + MIR SINE MIR 8 248 -14 1809 186 93 73 chr3 198819556 198820051 -28704527 + MLT1D LTR MaLR 1 505 0 369 0 0 0 chr3 198820110 198820151 -28704427 + (CA)n Simple_repeat Simple_repeat 2 42 0 2152 117 13 0 chr3 198820157 198820457 -28704121 - AluSg SINE Alu -6 304 1 365 305 92 0 chr3 198820706 198820870 -28703708 - MIR SINE MIR -13 249 71 261 0 0 0 chr3 198820941 198820970 -28703608 + (CA)n Simple_repeat Simple_repeat 2 30 0 23 33 0 0 chr3 198822316 198822346 -28702232 + AT_rich Low_complexity Low_complexity 1 30 0 183 80 0 0 chr3 198822434 198822459 -28702119 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 384 272 44 50 chr3 198822627 198822807 -28701771 - MIR SINE MIR -21 241 63 21 36 0 0 chr3 198822895 198822923 -28701655 + AT_rich Low_complexity Low_complexity 1 28 0 237 224 0 0 chr3 198824244 198824302 -28700276 + (TATG)n Simple_repeat Simple_repeat 3 60 0 185 286 16 16 chr3 198826355 198826418 -28698160 - MIR SINE MIR -67 141 79 192 225 138 25 chr3 198827898 198827978 -28696600 - MIR SINE MIR -90 172 84 338 233 217 8 chr3 198828489 198828618 -28695960 + MER5A DNA MER1_type 34 189 0 2102 109 7 0 chr3 198828804 198829128 -28695450 + AluSp SINE Alu 1 326 0 23 0 0 0 chr3 198830266 198830289 -28694289 + AT_rich Low_complexity Low_complexity 1 23 0 261 295 0 26 chr3 198830470 198830548 -28694030 - MER5B DNA MER1_type -101 77 2 1145 60 0 0 chr3 198830763 198830897 -28693681 + AluSq/x SINE Alu 2 135 -178 2377 89 0 0 chr3 198830897 198831200 -28693378 + AluSx SINE Alu 1 303 -9 186 43 0 0 chr3 198831881 198831904 -28692674 + (T)n Simple_repeat Simple_repeat 1 23 0 879 211 23 0 chr3 198831906 198832077 -28692501 - FAM SINE Alu 0 175 1 24 0 0 0 chr3 198832081 198832105 -28692473 + AT_rich Low_complexity Low_complexity 1 24 0 361 292 44 18 chr3 198832555 198832668 -28691910 + MIR SINE MIR 25 140 -122 282 267 104 37 chr3 198835190 198835325 -28689253 + L2 LINE L2 3167 3310 -3 191 375 10 42 chr3 198837136 198837232 -28687346 + MIR SINE MIR 16 108 -100 1373 220 46 6 chr3 198838331 198838658 -28685920 - MER58B DNA MER1_type 0 341 2 781 253 40 0 chr3 198839590 198839792 -28684786 + MER63A DNA MER1_type 1 210 0 220 313 141 8 chr3 198843443 198843571 -28681007 - MIR SINE MIR 0 262 118 406 305 51 25 chr3 198843846 198844043 -28680535 - L2 LINE L2 -1023 2291 2090 298 354 63 23 chr3 198844704 198844879 -28679699 - MIR3 SINE MIR -9 199 18 1718 158 0 7 chr3 198845690 198845992 -28678586 - AluSg SINE Alu 0 310 11 23 33 0 0 chr3 198846283 198846313 -28678265 + AT_rich Low_complexity Low_complexity 1 30 0 2274 122 0 6 chr3 198849072 198849384 -28675194 - AluSx SINE Alu -2 310 1 24 32 0 0 chr3 198849480 198849511 -28675067 + AT_rich Low_complexity Low_complexity 1 31 0 454 250 102 0 chr3 198851020 198851148 -28673430 + MIR SINE MIR 1 141 -121 970 201 5 11 chr3 198853157 198853346 -28671232 + MER5A DNA MER1_type 2 189 0 627 274 49 49 chr3 198853346 198853591 -28670987 + MIR SINE MIR 18 262 0 199 293 114 57 chr3 198854795 198854918 -28669660 - L2 LINE L2 0 3313 3184 261 273 0 15 chr3 198855956 198856022 -28668556 - MIR SINE MIR -63 145 81 307 236 86 136 chr3 198856099 198856379 -28668199 + L2 LINE L2 3042 3307 -6 194 368 46 11 chr3 198856687 198856774 -28667804 - L2 LINE L2 -34 3238 3149 304 354 53 0 chr3 198856833 198856946 -28667632 - MIR SINE MIR -70 138 20 511 379 55 50 chr3 198857355 198857478 -28667100 - L2 LINE L2 -5 3267 3146 372 43 0 0 chr3 198857478 198857524 -28667054 + (CA)n Simple_repeat Simple_repeat 2 47 0 511 379 55 50 chr3 198857524 198857820 -28666758 - L2 LINE L2 -126 3146 2846 886 313 31 45 chr3 198857956 198858445 -28666133 - L2 LINE L2 -837 2477 1996 454 302 212 13 chr3 198858708 198859099 -28665479 - L2 LINE L2 -904 2410 1942 1978 98 47 24 chr3 198859099 198859396 -28665182 + AluY SINE Alu 1 304 -7 21 57 0 0 chr3 198859861 198859896 -28664682 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr3 198860837 198860864 -28663714 + AT_rich Low_complexity Low_complexity 1 27 0 202 321 49 0 chr3 198861880 198861961 -28662617 + MIR SINE MIR 167 251 -11 2102 105 0 71 chr3 198861971 198862296 -28662282 + AluSg SINE Alu 1 302 -8 182 291 165 19 chr3 198862565 198862668 -28661910 - MIR3 SINE MIR -90 118 1 41 21 0 0 chr3 198864663 198864711 -28659867 + AT_rich Low_complexity Low_complexity 1 48 0 1329 196 119 11 chr3 198865681 198866033 -28658545 + MLT1B LTR MaLR 1 390 0 306 278 26 61 chr3 198866100 198866215 -28658363 - L2 LINE L2 0 3272 3162 286 185 25 0 chr3 198866232 198866313 -28658265 + (TA)n Simple_repeat Simple_repeat 2 84 0 229 283 0 22 chr3 198866318 198866410 -28658168 + L1MC4 LINE L1 6614 6703 -1339 * 258 211 0 63 chr3 198866358 198866453 -28658125 - L1MC4 LINE L1 -1339 6703 6615 226 206 27 0 chr3 198866468 198866541 -28658037 + (TA)n Simple_repeat Simple_repeat 1 75 0 1059 347 90 46 chr3 198866599 198867701 -28656877 - L2 LINE L2 -194 3078 1905 218 256 238 30 chr3 198867698 198867862 -28656716 - MIR SINE MIR -20 242 45 * 201 39 0 0 chr3 198867952 198867978 -28656600 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 195 310 17 17 chr3 198868029 198868087 -28656491 + L2 LINE L2 3122 3179 -93 21 0 0 0 chr3 198868594 198868615 -28655963 + AT_rich Low_complexity Low_complexity 1 21 0 261 273 0 15 chr3 198869875 198869941 -28654637 - MIR SINE MIR -63 145 81 307 236 86 136 chr3 198870018 198870298 -28654280 + L2 LINE L2 3042 3307 -6 194 368 46 11 chr3 198870606 198870693 -28653885 - L2 LINE L2 -34 3238 3149 304 354 53 0 chr3 198870752 198870865 -28653713 - MIR SINE MIR -70 138 20 497 374 55 50 chr3 198871274 198871397 -28653181 - L2 LINE L2 -5 3267 3146 372 43 0 0 chr3 198871397 198871443 -28653135 + (CA)n Simple_repeat Simple_repeat 2 47 0 497 374 55 50 chr3 198871443 198871739 -28652839 - L2 LINE L2 -126 3146 2846 886 313 31 45 chr3 198871875 198872364 -28652214 - L2 LINE L2 -837 2477 1996 651 280 164 79 chr3 198872626 198873017 -28651561 - L2 LINE L2 -904 2410 2053 1803 152 10 40 chr3 198873017 198873320 -28651258 + AluSx SINE Alu 1 294 -18 651 280 164 79 chr3 198873320 198873721 -28650857 - L2 LINE L2 -1261 2053 1551 660 261 56 14 chr3 198874630 198874917 -28649661 - L1ME4a LINE L1 -206 5915 5617 21 36 0 0 chr3 198875018 198875046 -28649532 + AT_rich Low_complexity Low_complexity 1 28 0 324 280 205 20 chr3 198875350 198875550 -28649028 + MIR SINE MIR 2 238 -24 29 0 0 0 chr3 198876635 198876664 -28647914 + AT_rich Low_complexity Low_complexity 1 29 0 193 305 25 51 chr3 198877746 198877864 -28646714 - MER5A DNA MER1_type -6 183 69 * 447 321 177 30 chr3 198877862 198878229 -28646349 + L2 LINE L2 2832 3252 -61 208 316 0 0 chr3 198878612 198878669 -28645909 + MIR3 SINE MIR 104 160 -48 343 254 16 32 chr3 198878815 198878941 -28645637 - MER103 DNA DNA -35 131 8 2128 127 7 0 chr3 198879065 198879365 -28645213 + AluSg SINE Alu 1 302 -8 2178 116 0 10 chr3 198879975 198880286 -28644292 + AluSx SINE Alu 5 312 0 1398 194 125 44 chr3 198880297 198880490 -28644088 + MLT1C LTR MaLR 1 177 -290 2194 97 0 7 chr3 198880490 198880779 -28643799 + AluSg SINE Alu 1 287 -23 1398 194 125 44 chr3 198880779 198881017 -28643561 + MLT1C LTR MaLR 177 467 0 23 33 0 0 chr3 198882428 198882458 -28642120 + AT_rich Low_complexity Low_complexity 1 30 0 22 0 0 0 chr3 198883794 198883816 -28640762 + AT_rich Low_complexity Low_complexity 1 22 0 308 319 200 36 chr3 198883924 198884420 -28640158 - MLT1L LTR MaLR -27 588 12 1723 169 39 3 chr3 198885198 198885530 -28639048 - L1MC1 LINE L1 -2 6331 5988 921 217 10 0 chr3 198885739 198885946 -28638632 + MER3 DNA MER1_type 1 209 0 1823 90 7 54 chr3 198886118 198886395 -28638183 - AluSx SINE Alu -12 300 37 409 240 113 44 chr3 198886427 198886631 -28637947 + MER112 DNA MER1_type 2 219 -41 497 30 15 0 chr3 198887932 198887999 -28636579 + (TAGA)n Simple_repeat Simple_repeat 4 71 0 233 130 14 43 chr3 198888055 198888124 -28636454 + (TA)n Simple_repeat Simple_repeat 2 68 0 233 274 0 10 chr3 198888150 198888252 -28636326 + (TATATG)n Simple_repeat Simple_repeat 5 105 0 1613 158 49 0 chr3 198888432 198888697 -28635881 - AluJb SINE Alu -33 279 2 243 0 0 0 chr3 198888769 198888796 -28635782 + (A)n Simple_repeat Simple_repeat 1 27 0 1743 185 3 10 chr3 198889936 198890289 -28634289 - AluJo SINE Alu 0 351 1 736 206 21 21 chr3 198890611 198890800 -28633778 - MER5A DNA MER1_type 0 189 1 277 272 154 0 chr3 198891277 198891413 -28633165 - MER112 DNA MER1_type -6 254 98 22 0 0 0 chr3 198891487 198891509 -28633069 + AT_rich Low_complexity Low_complexity 1 22 0 436 220 20 0 chr3 198891903 198892003 -28632575 - MIR SINE MIR -77 185 84 212 406 8 8 chr3 198892382 198892515 -28632063 - MIR SINE MIR -99 163 31 450 290 60 32 chr3 198893931 198894148 -28630430 + MARNA DNA Mariner 150 372 -214 21 57 0 0 chr3 198894891 198894926 -28629652 + AT_rich Low_complexity Low_complexity 1 35 0 201 264 0 19 chr3 198895709 198895762 -28628816 - L2 LINE L2 0 3313 3262 334 236 100 57 chr3 198895920 198896060 -28628518 + MIR SINE MIR 110 255 -7 271 200 91 0 chr3 198896100 198896155 -28628423 + MER20 DNA MER1_type 1 60 -159 21 0 0 0 chr3 198896354 198896375 -28628203 + AT_rich Low_complexity Low_complexity 1 21 0 2135 113 0 7 chr3 198896436 198896729 -28627849 - AluSx SINE Alu -19 293 3 236 194 28 97 chr3 198896829 198896901 -28627677 + MER5B DNA MER1_type 112 178 0 332 260 0 0 chr3 198897657 198897730 -28626848 + MER5A DNA MER1_type 10 82 -107 211 358 12 0 chr3 198898260 198898341 -28626237 - L3 LINE CR1 -1 1576 1495 639 294 115 48 chr3 198898347 198898809 -28625769 - L3 LINE CR1 -441 1136 644 445 296 0 9 chr3 198899635 198899750 -28624828 + L2 LINE L2 3197 3310 -3 392 306 129 0 chr3 198900063 198900210 -28624368 + MIR SINE MIR 26 191 -71 1958 122 20 94 chr3 198900944 198901090 -28623488 + MLT1B LTR MaLR 27 182 -208 1904 163 3 0 chr3 198901090 198901390 -28623188 + AluSx SINE Alu 1 301 -11 1958 122 20 94 chr3 198901390 198901636 -28622942 + MLT1B LTR MaLR 182 390 0 306 0 0 0 chr3 198902253 198902287 -28622291 + (TG)n Simple_repeat Simple_repeat 2 35 0 477 273 186 10 chr3 198902441 198902638 -28621940 - MLT1I LTR MaLR -105 304 73 180 77 0 0 chr3 198903181 198903207 -28621371 + (TTCA)n Simple_repeat Simple_repeat 3 28 0 1506 205 37 34 chr3 198903273 198903624 -28620954 - MLT1A2 LTR MaLR 0 374 23 630 304 59 21 chr3 198903679 198903916 -28620662 - MIR SINE MIR -3 259 14 375 275 47 74 chr3 198905905 198906054 -28618524 + MIR SINE MIR 47 191 -71 287 239 54 77 chr3 198906064 198906194 -28618384 - L2 LINE L2 -8 3305 3179 21 0 0 0 chr3 198907741 198907762 -28616816 + AT_rich Low_complexity Low_complexity 1 21 0 1604 193 10 13 chr3 198908013 198908318 -28616260 - AluJb SINE Alu -8 304 1 493 289 47 0 chr3 198909039 198909188 -28615390 + MIR SINE MIR 93 248 -14 1418 210 55 30 chr3 198909537 198909899 -28614679 - MLT1A2 LTR MaLR -3 371 1 336 337 30 24 chr3 198909925 198910094 -28614484 - MIR3 SINE MIR -1 207 38 383 93 0 0 chr3 198910955 198911009 -28613569 - MADE1 DNA Mariner 0 80 27 6848 102 26 26 chr3 198911820 198912887 -28611691 - MER11C LTR ERVK -4 1067 1 269 289 83 40 chr3 198913257 198913496 -28611082 + L1ME4a LINE L1 5657 5921 -200 1326 152 219 33 chr3 198913496 198913857 -28610721 + MSTC LTR MaLR 1 428 0 269 289 83 40 chr3 198913857 198914012 -28610566 + L1ME4a LINE L1 5921 6068 -53 21 57 0 0 chr3 198914903 198914938 -28609640 + AT_rich Low_complexity Low_complexity 1 35 0 324 256 12 0 chr3 198916077 198916163 -28608415 + MLT1K LTR MaLR 494 580 -8 587 113 151 0 chr3 198916868 198916974 -28607604 + L1P4 LINE L1 5351 5472 -693 670 188 25 19 chr3 198917133 198917293 -28607285 + L1ME3A LINE L1 6001 6161 -9 348 309 103 6 chr3 198917472 198917647 -28606931 - MIR SINE MIR -11 251 60 225 0 0 0 chr3 198918445 198918470 -28606108 + (A)n Simple_repeat Simple_repeat 1 25 0 191 283 0 0 chr3 198919509 198919562 -28605016 - MIR SINE MIR -115 147 95 284 319 61 58 chr3 198919777 198920090 -28604488 + L1P4 LINE L1 5258 5574 -591 1816 178 10 0 chr3 198920420 198920729 -28603849 - AluJo SINE Alu 0 312 1 186 143 0 0 chr3 198921370 198921405 -28603173 + (A)n Simple_repeat Simple_repeat 1 35 0 634 207 162 71 chr3 198921767 198922076 -28602502 - MER46C DNA MER2_type 0 338 2 1812 171 23 0 chr3 198922139 198922444 -28602134 + THE1B LTR MaLR 1 312 -52 9293 107 97 36 chr3 198922461 198923951 -28600627 + THE1B-int LTR MaLR 1 1580 0 2337 120 25 6 chr3 198923951 198924308 -28600270 + THE1B LTR MaLR 1 364 0 268 348 84 22 chr3 198924380 198924426 -28600152 - MIR SINE MIR -59 203 161 2385 83 7 0 chr3 198924426 198924727 -28599851 - AluSq SINE Alu -10 303 1 268 348 84 22 chr3 198924727 198924858 -28599720 - MIR SINE MIR -101 161 15 1067 273 95 68 chr3 198924887 198926583 -28597995 + HAL1 LINE L1 3 1824 -683 522 248 18 0 chr3 198926632 198926745 -28597833 + MER5B DNA MER1_type 64 178 0 386 203 0 0 chr3 198926763 198926832 -28597746 + MER5A DNA MER1_type 11 79 -110 891 262 26 51 chr3 198926865 198927178 -28597400 + L1MCb LINE L1 241 545 -5500 231 211 67 22 chr3 198927249 198927339 -28597239 - L1MC4 LINE L1 -1325 6717 6624 4679 224 115 16 chr3 198927345 198929379 -28595199 + L1MCb LINE L1 570 2863 -3882 25 31 0 0 chr3 198929410 198929442 -28595136 + AT_rich Low_complexity Low_complexity 1 32 0 198 163 184 0 chr3 198930593 198930642 -28593936 + MER5A DNA MER1_type 132 189 0 4687 110 4 6 chr3 198930895 198931586 -28592992 - L1PA13 LINE L1 0 6163 5474 31 0 0 0 chr3 198933525 198933556 -28591022 + AT_rich Low_complexity Low_complexity 1 31 0 1637 78 0 17 chr3 198933556 198933788 -28590790 - L1PA8 LINE L1 -1 6171 5944 370 211 73 32 chr3 198934824 198934947 -28589631 + L1M4 LINE L1 5119 5246 -900 305 351 44 34 chr3 198935043 198935248 -28589330 - L1MC4 LINE L1 -6 8036 7830 2510 226 62 49 chr3 198935297 198936113 -28588465 - L1ME2 LINE L1 -5 6159 5289 1832 137 0 0 chr3 198936113 198936368 -28588210 + AluSx SINE Alu 39 293 -19 2510 226 62 49 chr3 198936368 198936800 -28587778 - L1ME2 LINE L1 -875 5289 4864 479 300 55 55 chr3 198936921 198937178 -28587400 - MIR SINE MIR 0 262 6 2181 121 52 22 chr3 198937185 198937549 -28587029 - THE1C LTR MaLR 0 375 1 9975 128 27 20 chr3 198937549 198939014 -28585564 - THE1C-int LTR MaLR 0 1580 102 2206 124 68 8 chr3 198939014 198939368 -28585210 + THE1C LTR MaLR 1 375 0 9975 128 27 20 chr3 198939368 198939471 -28585107 - THE1C-int LTR MaLR -1478 102 1 2062 162 5 41 chr3 198939471 198939860 -28584718 - THE1C LTR MaLR 0 375 1 233 342 54 36 chr3 198941766 198941877 -28582701 - L2 LINE L2 -21 3251 3139 208 267 17 0 chr3 198941898 198941958 -28582620 + (CATA)n Simple_repeat Simple_repeat 4 64 0 271 191 0 209 chr3 198942562 198942667 -28581911 + MIR3 SINE MIR 83 165 -43 200 359 56 20 chr3 198943615 198943813 -28580765 - L2 LINE L2 -555 2759 2555 200 296 0 0 chr3 198945458 198945502 -28579076 - MIR SINE MIR -67 141 98 25 31 0 0 chr3 198946622 198946654 -28577924 + AT_rich Low_complexity Low_complexity 1 32 0 216 349 40 47 chr3 198947454 198947603 -28576975 + MIR SINE MIR 41 188 -74 201 333 51 13 chr3 198948442 198948520 -28576058 + L2 LINE L2 3139 3219 -53 222 286 0 26 chr3 198949064 198949141 -28575437 - MER5C DNA MER1_type -200 124 50 291 303 92 49 chr3 198949157 198949342 -28575236 + L2 LINE L2 2863 3055 -217 323 235 136 0 chr3 198950030 198950111 -28574467 + MIR SINE MIR 163 254 -8 572 229 39 33 chr3 198950297 198950450 -28574128 - MIR SINE MIR -20 242 89 323 170 50 50 chr3 198951945 198952045 -28572533 + 7SK RNA RNA 1 100 -93 196 253 67 53 chr3 198952793 198952868 -28571710 + L2 LINE L2 3188 3263 -9 418 320 103 15 chr3 198953968 198954171 -28570407 - MIR SINE MIR -4 258 38 28 29 0 0 chr3 198954460 198954495 -28570083 + AT_rich Low_complexity Low_complexity 1 35 0 1235 300 43 10 chr3 198957421 198957935 -28566643 + L1MEc LINE L1 1480 2010 -4386 189 211 0 0 chr3 198957983 198958040 -28566538 + GA-rich Low_complexity Low_complexity 1 57 0 180 0 0 0 chr3 198958184 198958204 -28566374 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 1781 116 0 4 chr3 198958210 198958468 -28566110 + AluSq SINE Alu 49 305 -8 722 197 0 31 chr3 198958705 198958832 -28565746 + MIR SINE MIR 5 127 -135 268 235 20 20 chr3 198958876 198958978 -28565600 + (TA)n Simple_repeat Simple_repeat 1 102 0 181 237 0 0 chr3 198959203 198959241 -28565337 + MIR SINE MIR 225 262 0 267 282 117 0 chr3 198959376 198959539 -28565039 + L1MEc LINE L1 1808 1989 -4407 186 208 0 0 chr3 198959598 198959651 -28564927 + GA-rich Low_complexity Low_complexity 1 53 0 830 232 217 69 chr3 198959885 198960353 -28564225 + MLT1E LTR MaLR 31 567 0 441 0 0 0 chr3 198960820 198960869 -28563709 + (TC)n Simple_repeat Simple_repeat 2 50 0 243 0 0 0 chr3 198960868 198960895 -28563683 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 24 0 0 0 chr3 198963125 198963149 -28561429 + AT_rich Low_complexity Low_complexity 1 24 0 250 293 36 43 chr3 198963627 198963767 -28560811 - L2 LINE L2 -586 2728 2590 563 313 19 39 chr3 198964107 198964363 -28560215 + MIR SINE MIR 8 258 -4 2169 120 0 0 chr3 198964633 198964933 -28559645 - AluSg SINE Alu -10 300 1 1665 203 3 3 chr3 198965078 198965374 -28559204 + AluJb SINE Alu 3 298 -14 1503 150 0 110 chr3 198965713 198966040 -28558538 + AluJb SINE Alu 11 301 -11 29 47 0 0 chr3 198970448 198970491 -28554087 + AT_rich Low_complexity Low_complexity 1 43 0 24 0 0 0 chr3 198970593 198970617 -28553961 + AT_rich Low_complexity Low_complexity 1 24 0 258 374 0 50 chr3 198970842 198970981 -28553597 + L2 LINE L2 2958 3089 -183 414 0 0 0 chr3 198970983 198971029 -28553549 + (GA)n Simple_repeat Simple_repeat 2 47 0 342 0 0 0 chr3 198971028 198971066 -28553512 + (TG)n Simple_repeat Simple_repeat 2 39 0 * 2160 111 13 0 chr3 198971851 198972157 -28552421 - AluSg SINE Alu 0 310 1 229 301 233 0 chr3 198972664 198972767 -28551811 + L3 LINE CR1 1443 1569 -8 5990 98 13 7 chr3 198973397 198974353 -28550225 + L1PA13 LINE L1 5197 6158 -5 3878 138 38 39 chr3 198974545 198975080 -28549498 - MER50 LTR ERV1 -23 711 177 191 35 0 35 chr3 198975080 198975109 -28549469 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 3878 138 38 39 chr3 198975109 198975226 -28549352 - MER50 LTR ERV1 -557 177 58 315 0 0 0 chr3 198975226 198975261 -28549317 + (TG)n Simple_repeat Simple_repeat 1 35 0 3878 138 38 39 chr3 198975261 198975319 -28549259 - MER50 LTR ERV1 -676 58 1 1880 183 3 30 chr3 198975581 198975901 -28548677 - MLT1A1 LTR MaLR -2 363 53 2002 81 106 0 chr3 198975901 198976174 -28548404 - AluSp SINE Alu -11 302 1 1880 183 3 30 chr3 198976174 198976219 -28548359 - MLT1A1 LTR MaLR -312 53 8 22 35 0 0 chr3 198976656 198976685 -28547893 + AT_rich Low_complexity Low_complexity 1 29 0 212 204 34 23 chr3 198976829 198976917 -28547661 + (TATAA)n Simple_repeat Simple_repeat 5 93 0 26 64 0 0 chr3 198976953 198977000 -28547578 + AT_rich Low_complexity Low_complexity 1 47 0 2193 108 0 20 chr3 198977024 198977330 -28547248 - AluSq SINE Alu -13 300 1 421 292 14 73 chr3 198977520 198977739 -28546839 + MIR SINE MIR 56 261 -1 352 100 0 0 chr3 198980152 198980202 -28544376 + MADE1 DNA Mariner 1 50 -30 453 275 0 0 chr3 198980479 198980646 -28543932 + (TA)n Simple_repeat Simple_repeat 1 167 0 29 94 0 0 chr3 198981008 198981093 -28543485 + AT_rich Low_complexity Low_complexity 1 85 0 1895 138 6 18 chr3 198981265 198981592 -28542986 + L1PA13 LINE L1 5835 6157 -6 22 56 0 0 chr3 198982742 198982778 -28541800 + AT_rich Low_complexity Low_complexity 1 36 0 2298 54 11 0 chr3 198982778 198983058 -28541520 + AluY SINE Alu 1 283 -28 459 0 0 0 chr3 198983061 198983112 -28541466 + (TAAA)n Simple_repeat Simple_repeat 2 52 0 2116 123 0 7 chr3 198984494 198984796 -28539782 + AluSx SINE Alu 3 302 -10 347 284 12 0 chr3 198985107 198985188 -28539390 + MER5A DNA MER1_type 9 90 -99 222 105 0 0 chr3 198986922 198986960 -28537618 + (TTA)n Simple_repeat Simple_repeat 2 39 0 583 161 0 11 chr3 198988662 198988749 -28535829 - MER30 DNA MER1_type 0 230 145 262 143 0 0 chr3 198988743 198988785 -28535793 - Alu SINE Alu -6 296 255 * 207 0 0 0 chr3 198989050 198989073 -28535505 + (A)n Simple_repeat Simple_repeat 1 23 0 21 36 0 0 chr3 198989512 198989540 -28535038 + AT_rich Low_complexity Low_complexity 1 28 0 204 97 0 0 chr3 198989769 198989800 -28534778 + (TG)n Simple_repeat Simple_repeat 2 32 0 402 238 13 7 chr3 198989829 198989980 -28534598 + (TA)n Simple_repeat Simple_repeat 1 152 0 2178 100 0 0 chr3 198990021 198990301 -28534277 + AluSx SINE Alu 1 280 -32 188 86 29 0 chr3 198990301 198990336 -28534242 + (TAAA)n Simple_repeat Simple_repeat 1 36 0 301 194 67 112 chr3 198990465 198990599 -28533979 + L1MC4 LINE L1 6611 6738 -1304 361 281 196 26 chr3 198992911 198993064 -28531514 - MER5A DNA MER1_type -2 187 9 23 33 0 0 chr3 198994579 198994609 -28529969 + AT_rich Low_complexity Low_complexity 1 30 0 21 82 0 0 chr3 198994635 198994684 -28529894 + AT_rich Low_complexity Low_complexity 1 49 0 208 316 36 79 chr3 198994687 198994940 -28529638 + L2 LINE L2 2673 2914 -400 263 299 14 83 chr3 198995103 198995247 -28529331 - MER94 DNA DNA 0 134 1 323 372 28 37 chr3 198995286 198995504 -28529074 + MIR SINE MIR 16 231 -31 1677 188 78 0 chr3 198995513 198995859 -28528719 - MER93b LTR ERV1 0 373 1 216 368 40 32 chr3 198995930 198996055 -28528523 + L2 LINE L2 3143 3268 -4 24 0 0 0 chr3 198997633 198997657 -28526921 + AT_rich Low_complexity Low_complexity 1 24 0 1698 147 10 24 chr3 198999566 198999859 -28524719 + AluJb SINE Alu 6 294 -18 216 154 0 0 chr3 198999980 199000032 -28524546 + (TA)n Simple_repeat Simple_repeat 2 53 0 266 385 120 0 chr3 199000284 199000492 -28524086 - MIR SINE MIR -3 259 27 363 200 0 0 chr3 199000832 199000912 -28523666 - L1MD2 LINE L1 -2 6357 6278 1282 202 65 10 chr3 199000912 199001284 -28523294 - MLT2B1 LTR ERVL -5 510 160 342 0 0 0 chr3 199001284 199001322 -28523256 + (CA)n Simple_repeat Simple_repeat 1 38 0 315 0 0 0 chr3 199001321 199001356 -28523222 + (GA)n Simple_repeat Simple_repeat 2 36 0 * 1282 202 65 10 chr3 199001322 199001419 -28523159 - MLT2B1 LTR ERVL -355 160 3 4312 201 36 26 chr3 199001420 199002610 -28521968 - L1MD1 LINE L1 -69 6567 5361 773 193 23 23 chr3 199002615 199002786 -28521792 - L1MD1 LINE L1 -6188 352 182 895 158 91 19 chr3 199002787 199003122 -28521456 - MER31A LTR ERV1 -6 460 1 247 197 15 76 chr3 199003126 199003192 -28521386 - L1MD1 LINE L1 -6356 184 123 188 86 29 0 chr3 199003192 199003227 -28521351 + (TCTCTG)n Simple_repeat Simple_repeat 2 37 0 185 333 32 0 chr3 199004866 199004929 -28519649 + L2 LINE L2 3233 3297 -16 448 279 20 94 chr3 199005518 199005772 -28518806 - Charlie8 DNA MER1_type -2129 288 54 28 48 0 0 chr3 199005807 199005849 -28518729 + AT_rich Low_complexity Low_complexity 1 42 0 26 30 0 0 chr3 199007067 199007100 -28517478 + AT_rich Low_complexity Low_complexity 1 33 0 430 340 16 11 chr3 199007898 199008089 -28516489 + MIR SINE MIR 68 259 -3 234 337 96 0 chr3 199009218 199009301 -28515277 - MIR SINE MIR -124 138 48 190 315 67 45 chr3 199009704 199009793 -28514785 + MIR SINE MIR 47 137 -71 352 374 12 30 chr3 199010044 199010210 -28514368 + MIR3 SINE MIR 33 195 -13 255 254 28 14 chr3 199010492 199010563 -28514015 + (CACCAT)n Simple_repeat Simple_repeat 5 76 0 1927 166 7 0 chr3 199010631 199010938 -28513640 - AluSx SINE Alu 0 312 4 251 326 7 57 chr3 199011273 199011414 -28513164 - MIR SINE MIR -45 217 84 2172 58 48 17 chr3 199011638 199011933 -28512645 + AluY SINE Alu 1 304 -7 21 57 0 0 chr3 199012398 199012433 -28512145 + AT_rich Low_complexity Low_complexity 1 35 0 27 0 0 0 chr3 199013374 199013401 -28511177 + AT_rich Low_complexity Low_complexity 1 27 0 205 321 49 0 chr3 199014418 199014499 -28510079 + MIR SINE MIR 167 251 -11 2092 108 0 65 chr3 199014509 199014832 -28509746 + AluSg SINE Alu 1 302 -8 181 306 157 19 chr3 199015096 199015204 -28509374 - MIR3 SINE MIR -85 123 1 41 21 0 0 chr3 199017199 199017247 -28507331 + AT_rich Low_complexity Low_complexity 1 48 0 1316 196 119 11 chr3 199018217 199018569 -28506009 + MLT1B LTR MaLR 1 390 0 309 220 167 47 chr3 199018636 199018786 -28505792 - L2 LINE L2 0 3313 3146 258 206 0 0 chr3 199018786 199018849 -28505729 + (TA)n Simple_repeat Simple_repeat 2 64 0 245 283 0 22 chr3 199018854 199018946 -28505632 + L1MC4 LINE L1 6614 6703 -1339 * 273 211 0 63 chr3 199018894 199018989 -28505589 - L1MC4 LINE L1 -1339 6703 6615 226 206 27 0 chr3 199019004 199019077 -28505501 + (TA)n Simple_repeat Simple_repeat 1 75 0 1059 347 90 46 chr3 199019135 199020237 -28504341 - L2 LINE L2 -194 3078 1905 213 256 238 30 chr3 199020234 199020398 -28504180 - MIR SINE MIR -20 242 45 * 201 39 0 0 chr3 199020488 199020514 -28504064 + (TTTG)n Simple_repeat Simple_repeat 1 26 0 194 310 17 17 chr3 199020565 199020623 -28503955 + L2 LINE L2 3122 3179 -93 21 0 0 0 chr3 199021130 199021151 -28503427 + AT_rich Low_complexity Low_complexity 1 21 0 414 0 0 0 chr3 199023658 199023704 -28500874 + (CA)n Simple_repeat Simple_repeat 2 47 0 2187 94 7 3 chr3 199024396 199024695 -28499883 + AluSq SINE Alu 1 300 -13 197 311 111 11 chr3 199024851 199024941 -28499637 - L2 LINE L2 -1 3312 3214 214 246 0 53 chr3 199025789 199025846 -28498732 + MIR SINE MIR 104 157 -105 270 253 40 20 chr3 199026884 199026983 -28497595 - L2 LINE L2 -10 3262 3162 297 0 0 0 chr3 199028197 199028230 -28496348 + (CA)n Simple_repeat Simple_repeat 2 34 0 1912 151 57 14 chr3 199031164 199031515 -28493063 - MER47A DNA MER2_type 0 366 1 392 304 14 55 chr3 199031695 199031865 -28492713 + MIR SINE MIR 30 192 -61 2342 71 0 0 chr3 199032734 199033029 -28491549 - AluY SINE Alu -8 303 9 5243 169 36 7 chr3 199033386 199034386 -28490192 - L1MC1 LINE L1 -137 6196 5171 751 252 60 30 chr3 199034708 199034942 -28489636 - MIR SINE MIR -10 252 12 304 266 80 75 chr3 199035927 199036153 -28488425 - L2 LINE L2 -1 3312 3086 505 258 61 83 chr3 199036465 199036791 -28487787 - L1ME3A LINE L1 -242 5928 5610 253 324 65 0 chr3 199036866 199036974 -28487604 - L2 LINE L2 -336 2977 2863 2413 154 32 0 chr3 199037111 199037513 -28487065 - MSTB LTR MaLR -11 415 1 21 0 0 0 chr3 199037518 199037539 -28487039 + AT_rich Low_complexity Low_complexity 1 21 0 7267 40 27 0 chr3 199038220 199039487 -28485091 - L1PA7 LINE L1 0 6154 4873 2133 129 0 0 chr3 199039536 199039838 -28484740 + AluSc SINE Alu 1 302 -7 23 33 0 0 chr3 199040043 199040073 -28484505 + AT_rich Low_complexity Low_complexity 1 30 0 659 75 11 0 chr3 199040397 199040491 -28484087 + (TTCC)n Simple_repeat Simple_repeat 2 96 0 331 214 0 0 chr3 199040536 199040606 -28483972 + L1MA9 LINE L1 6222 6291 -21 305 277 76 8 chr3 199040655 199040774 -28483804 + MIR SINE MIR 134 260 -2 2337 67 0 0 chr3 199040874 199041171 -28483407 - AluSq SINE Alu -16 297 1 571 291 74 29 chr3 199041588 199041724 -28482854 - Charlie8 DNA MER1_type -86 255 102 1585 89 0 9 chr3 199041724 199041938 -28482640 - AluSq SINE Alu 0 313 102 571 291 74 29 chr3 199041938 199042045 -28482533 - Charlie8 DNA MER1_type -239 102 1 251 263 53 13 chr3 199043057 199043133 -28481445 - L2 LINE L2 -1 3271 3193 236 235 12 59 chr3 199043462 199043547 -28481031 - MLT1L LTR MaLR -328 287 207 908 208 117 5 chr3 199044640 199044837 -28479741 - MER20 DNA MER1_type 0 219 1 214 261 0 0 chr3 199046541 199046606 -28477972 + (TA)n Simple_repeat Simple_repeat 2 66 0 32 20 0 20 chr3 199046677 199046699 -28477879 + AT_rich Low_complexity Low_complexity 1 22 -27 2060 47 0 0 chr3 199046699 199046954 -28477624 + L1PA5 LINE L1 5892 6146 -8 32 20 0 20 chr3 199046954 199046981 -28477597 + AT_rich Low_complexity Low_complexity 22 49 0 381 322 57 28 chr3 199047161 199047372 -28477206 + L2 LINE L2 2667 2883 -431 187 256 26 0 chr3 199047434 199047473 -28477105 + L2 LINE L2 3008 3047 -266 744 214 44 31 chr3 199048014 199048173 -28476405 + AluJo SINE Alu 1 161 -151 27 0 0 0 chr3 199048566 199048593 -28475985 + AT_rich Low_complexity Low_complexity 1 27 0 217 202 0 36 chr3 199049019 199049103 -28475475 + (TATATG)n Simple_repeat Simple_repeat 6 86 0 193 88 59 29 chr3 199049120 199049188 -28475390 + (TAGA)n Simple_repeat Simple_repeat 1 70 0 29 28 0 0 chr3 199049205 199049241 -28475337 + AT_rich Low_complexity Low_complexity 1 36 0 305 69 81 0 chr3 199049241 199049328 -28475250 + (TA)n Simple_repeat Simple_repeat 1 94 0 65 0 0 0 chr3 199049328 199049393 -28475185 + AT_rich Low_complexity Low_complexity 1 65 0 22 35 0 0 chr3 199050097 199050126 -28474452 + AT_rich Low_complexity Low_complexity 1 29 0 212 158 18 0 chr3 199051283 199051340 -28473238 + (TA)n Simple_repeat Simple_repeat 2 59 0 435 265 172 13 chr3 199052820 199052971 -28471607 + MER5A DNA MER1_type 14 188 -1 207 69 0 0 chr3 199054393 199054422 -28470156 + (CA)n Simple_repeat Simple_repeat 2 30 0 526 193 134 75 chr3 199054462 199054701 -28469877 - L1MC4 LINE L1 0 8042 7790 1841 102 33 13 chr3 199055052 199055355 -28469223 - L1MA2 LINE L1 -104 6200 5892 2989 149 16 2 chr3 199055731 199056221 -28468357 - LOR1a LTR ERV1 0 497 1 465 314 216 41 chr3 199056260 199056900 -28467678 - L3 LINE CR1 -12 1565 814 12254 203 52 30 chr3 199057735 199064533 -28460045 - L1PA16 LINE L1 -5 6864 1 1507 133 20 0 chr3 199066485 199066740 -28457838 - L1MA2 LINE L1 -29 6275 6016 7462 200 26 113 chr3 199066740 199067996 -28456582 - L1 LINE L1 -1113 5033 3670 297 51 0 0 chr3 199067996 199068035 -28456543 + (TG)n Simple_repeat Simple_repeat 2 40 0 7462 200 26 113 chr3 199068035 199069846 -28454732 - L1 LINE L1 -2476 3670 2232 281 205 13 26 chr3 199070015 199070093 -28454485 - MIR SINE MIR -102 160 84 270 0 0 0 chr3 199070875 199070905 -28453673 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 462 327 27 0 chr3 199072229 199072379 -28452199 + MIR SINE MIR 2 155 -107 211 307 13 105 chr3 199073129 199073282 -28451296 - MIR SINE MIR -75 187 49 207 375 80 27 chr3 199075007 199075119 -28449459 - L2 LINE L2 -21 3251 3134 183 287 194 37 chr3 199075799 199075907 -28448671 + L2 LINE L2 3182 3306 -7 1798 139 3 64 chr3 199075950 199076082 -28448496 + AluJb SINE Alu 1 139 -173 261 0 0 0 chr3 199076082 199076111 -28448467 + (CA)n Simple_repeat Simple_repeat 2 30 0 1798 139 3 64 chr3 199076111 199076308 -28448270 + AluJb SINE Alu 139 310 -2 325 339 43 38 chr3 199076384 199076570 -28448008 + L2 LINE L2 2459 2645 -669 506 219 0 0 chr3 199076831 199076927 -28447651 - MER5A DNA MER1_type -85 104 9 187 310 71 25 chr3 199077367 199077564 -28447014 + L2 LINE L2 2868 3073 -199 873 205 51 10 chr3 199079615 199079810 -28444768 + MER3 DNA MER1_type 1 203 -6 229 303 192 20 chr3 199079821 199079920 -28444658 + L2 LINE L2 3154 3269 -3 284 306 112 0 chr3 199080233 199080331 -28444247 + L2 LINE L2 3148 3256 -16 219 213 43 0 chr3 199081046 199081093 -28443485 - MIR SINE MIR -11 251 203 352 279 57 32 chr3 199081186 199081198 -28443380 + MIR SINE MIR 8 18 -190 1102 219 83 22 chr3 199081198 199081522 -28443056 + MER2 DNA MER2_type 1 344 0 352 279 57 32 chr3 199081522 199081643 -28442935 + MIR SINE MIR 18 144 -64 241 278 60 90 chr3 199081964 199082097 -28442481 - L2 LINE L2 0 3313 3185 385 281 61 0 chr3 199082173 199082287 -28442291 + L2 LINE L2 3152 3272 0 540 352 4 20 chr3 199082698 199082951 -28441627 - MIR SINE MIR -12 250 2 389 286 74 40 chr3 199083029 199083204 -28441374 - MIR SINE MIR -71 191 11 37 23 0 0 chr3 199084741 199084785 -28439793 + AT_rich Low_complexity Low_complexity 1 44 0 210 71 0 0 chr3 199085298 199085326 -28439252 + (TG)n Simple_repeat Simple_repeat 2 29 0 288 70 0 0 chr3 199086087 199086130 -28438448 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 23 54 0 0 chr3 199087998 199088035 -28436543 + AT_rich Low_complexity Low_complexity 1 37 0 29 0 0 0 chr3 199088207 199088236 -28436342 + AT_rich Low_complexity Low_complexity 1 29 0 2141 100 27 0 chr3 199088480 199088781 -28435797 + AluSc SINE Alu 1 309 0 2383 87 3 0 chr3 199089152 199089464 -28435114 - AluSp SINE Alu 0 313 1 181 151 0 132 chr3 199090444 199090497 -28434081 - L2 LINE L2 -3 3310 3265 472 289 204 9 chr3 199091090 199091301 -28433277 - MIR SINE MIR 0 262 11 317 256 66 8 chr3 199091531 199091652 -28432926 - LTR67 LTR ERVL -26 531 404 249 33 0 0 chr3 199092055 199092085 -28432493 + (TG)n Simple_repeat Simple_repeat 2 31 0 399 258 157 14 chr3 199092136 199092353 -28432225 - L1ME4a LINE L1 -1 6120 5873 403 287 74 0 chr3 199092561 199092683 -28431895 - MIR SINE MIR -121 141 11 545 301 104 3 chr3 199092686 199093012 -28431566 - L1ME4a LINE L1 -393 5728 5370 2244 96 7 0 chr3 199093145 199093447 -28431131 - AluSx SINE Alu -5 307 4 445 291 75 0 chr3 199093547 199093681 -28430897 + MIR SINE MIR 118 261 -1 291 278 32 107 chr3 199094054 199094241 -28430337 - MIR SINE MIR -12 250 78 445 311 141 10 chr3 199094387 199094593 -28429985 + MIR SINE MIR 26 258 -4 214 395 48 36 chr3 199094729 199094896 -28429682 - L2 LINE L2 -2 3270 3102 1642 181 0 20 chr3 199095262 199095554 -28429024 + AluJb SINE Alu 5 290 -22 584 128 19 39 chr3 199095567 199095723 -28428855 + GA-rich Low_complexity Low_complexity 4 156 0 286 305 0 43 chr3 199096208 199096372 -28428206 + T-rich Low_complexity Low_complexity 3 159 0 339 85 0 0 chr3 199097280 199097327 -28427251 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 29 60 0 0 chr3 199099381 199099431 -28425147 + AT_rich Low_complexity Low_complexity 1 50 0 22 70 0 0 chr3 199099715 199099758 -28424820 + AT_rich Low_complexity Low_complexity 1 43 0 264 217 14 29 chr3 199100167 199100236 -28424342 + MIR SINE MIR 161 228 -34 238 323 0 0 chr3 199101656 199101721 -28422857 + L2 LINE L2 3246 3310 -3 1843 169 7 7 chr3 199103219 199103527 -28421051 - AluJb SINE Alu -4 308 1 2361 93 0 3 chr3 199103923 199104234 -28420344 - AluSg SINE Alu 0 310 1 681 318 60 48 chr3 199104240 199104724 -28419854 + L2 LINE L2 2824 3313 0 848 128 61 72 chr3 199105042 199105222 -28419356 + MER7A DNA MER2_type 1 176 -170 1517 90 54 0 chr3 199105224 199105447 -28419131 - LTR12 LTR ERV1 0 714 480 345 233 29 19 chr3 199105448 199105551 -28419027 - LTR30 LTR ERV1 -80 642 539 6076 143 62 71 chr3 199105551 199106840 -28417738 - pTR5 LTR ERV1 -418 2020 743 649 180 0 0 chr3 199106841 199106941 -28417637 + MER7A DNA MER2_type 222 321 -15 1625 240 50 44 chr3 199106959 199107459 -28417119 - MLT1D LTR MaLR -2 503 1 907 222 54 53 chr3 199107610 199108039 -28416539 - LTR37B LTR ERV1 0 468 6 21 0 0 0 chr3 199108225 199108246 -28416332 + AT_rich Low_complexity Low_complexity 1 21 0 239 226 184 54 chr3 199108987 199109155 -28415423 - MLT1J LTR MaLR -33 478 289 246 229 0 0 chr3 199109272 199109320 -28415258 - MLT1J LTR MaLR -463 48 1 23 0 0 0 chr3 199109321 199109344 -28415234 + AT_rich Low_complexity Low_complexity 1 23 0 184 362 153 6 chr3 199109348 199109525 -28415053 + MIR3 SINE MIR 1 203 -5 278 303 66 25 chr3 199110274 199110396 -28414182 - MIR3 SINE MIR -52 156 30 251 277 24 12 chr3 199110710 199110793 -28413785 - L2 LINE L2 -1 3312 3229 223 363 0 0 chr3 199110817 199110908 -28413670 - L2 LINE L2 -864 2450 2360 1224 266 57 25 chr3 199111259 199111661 -28412917 - MLT1C LTR MaLR 0 467 53 1261 209 28 59 chr3 199111662 199112020 -28412558 - MLT1A1 LTR MaLR 0 365 19 396 296 94 0 chr3 199113544 199113703 -28410875 + MIR SINE MIR 8 181 -81 311 318 84 39 chr3 199113704 199113883 -28410695 + MER5A DNA MER1_type 1 187 -2 347 228 98 49 chr3 199113940 199114063 -28410515 + L2 LINE L2 3141 3269 -3 22 0 0 0 chr3 199114695 199114717 -28409861 + AT_rich Low_complexity Low_complexity 1 22 0 1201 234 80 58 chr3 199115934 199116382 -28408196 - MLT1C LTR MaLR -2 465 8 197 335 145 30 chr3 199118110 199118310 -28406268 + L2 LINE L2 2339 2561 -753 2179 112 0 0 chr3 199118720 199119016 -28405562 + AluSx SINE Alu 1 296 -16 233 365 95 0 chr3 199119175 199119301 -28405277 - MIR3 SINE MIR -48 160 23 2504 47 0 0 chr3 199119753 199120049 -28404529 + AluY SINE Alu 1 296 -15 21 0 0 0 chr3 199120090 199120111 -28404467 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr3 199121033 199121069 -28403509 + AT_rich Low_complexity Low_complexity 1 36 0 277 228 109 43 chr3 199121663 199121755 -28402823 - MIR SINE MIR -116 146 49 369 357 47 0 chr3 199121906 199122035 -28402543 - MIR3 SINE MIR -31 177 43 21 0 0 0 chr3 199123161 199123182 -28401396 + AT_rich Low_complexity Low_complexity 1 21 0 652 355 9 0 chr3 199123296 199123507 -28401071 + MIR SINE MIR 6 218 -44 382 234 55 62 chr3 199123535 199123663 -28400915 + MIR SINE MIR 20 146 -116 236 204 19 0 chr3 199123799 199123853 -28400725 + (ATTTG)n Simple_repeat Simple_repeat 5 59 0 517 209 0 52 chr3 199124949 199125064 -28399514 + FLAM_A SINE Alu 1 109 -33 29 47 0 0 chr3 199125076 199125119 -28399459 + AT_rich Low_complexity Low_complexity 1 43 0 1428 122 8 49 chr3 199125231 199125478 -28399100 - LTR8 LTR ERV1 -439 252 16 2526 153 12 0 chr3 199125489 199125908 -28398670 - MER57B LTR ERV1 -3 431 8 264 246 0 16 chr3 199126259 199126320 -28398258 - LTR47B LTR ERVL 0 443 384 2650 83 95 5 chr3 199126331 199126742 -28397836 - LTR7 LTR ERV1 -2 448 1 1716 169 114 100 chr3 199126756 199127317 -28397261 - LTR49 LTR ERV1 -26 569 1 1396 208 41 46 chr3 199127317 199127505 -28397073 - LTR47B LTR ERVL -56 387 200 2103 88 7 24 chr3 199127505 199127834 -28396744 + AluSp SINE Alu 2 313 0 1396 208 41 46 chr3 199127834 199128034 -28396544 - LTR47B LTR ERVL -243 200 1 4094 159 16 19 chr3 199128363 199129061 -28395517 - MER50 LTR ERV1 -30 704 9 270 0 0 0 chr3 199129289 199129319 -28395259 + (T)n Simple_repeat Simple_repeat 1 30 0 558 255 47 42 chr3 199130178 199130390 -28394188 + L2 LINE L2 3084 3296 -17 400 279 83 106 chr3 199130426 199131068 -28393510 - L1M4 LINE L1 -3379 2767 2141 352 243 125 14 chr3 199131262 199131406 -28393172 - L2 LINE L2 -4 3309 3150 306 345 57 54 chr3 199131684 199131866 -28392712 - HAL1b LINE L1 -653 695 510 1905 157 10 0 chr3 199131866 199132160 -28392418 - AluSx SINE Alu -15 297 1 306 345 57 54 chr3 199132160 199132313 -28392265 - HAL1b LINE L1 -838 510 359 2131 123 3 0 chr3 199132661 199132963 -28391615 - AluSc SINE Alu -6 303 1 2185 120 13 0 chr3 199133363 199133672 -28390906 - AluSq SINE Alu 0 313 1 385 321 79 81 chr3 199134553 199134998 -28389580 + HAL1b LINE L1 70 513 -835 183 360 0 0 chr3 199135854 199135904 -28388674 - L2 LINE L2 -77 3195 3146 2587 33 0 16 chr3 199135954 199136261 -28388317 - AluY SINE Alu -9 302 1 385 266 35 26 chr3 199136354 199136534 -28388044 + MIR SINE MIR 8 236 -26 402 138 15 0 chr3 199136536 199136601 -28387977 + MER1A DNA MER1_type 1 66 -461 826 80 18 0 chr3 199136601 199136714 -28387864 + AluSg/x SINE Alu 186 300 -10 2996 154 22 0 chr3 199136715 199137177 -28387401 + MER1A DNA MER1_type 58 529 0 284 329 128 7 chr3 199138106 199138255 -28386323 - MIR SINE MIR -59 203 37 180 283 0 0 chr3 199140275 199140321 -28384257 - L2 LINE L2 -5 3308 3263 1700 188 4 0 chr3 199140741 199141013 -28383565 - AluJo SINE Alu -30 282 10 192 231 96 0 chr3 199142688 199142740 -28381838 - L2 LINE L2 -2 3311 3255 2104 130 0 3 chr3 199142781 199143082 -28381496 + AluSx SINE Alu 1 300 -12 267 297 11 11 chr3 199144490 199144581 -28379997 + MIR SINE MIR 168 258 -4 286 289 79 0 chr3 199145678 199145754 -28378824 - MER91B DNA MER1_type -2 188 107 275 261 92 17 chr3 199146168 199146287 -28378291 + L3b LINE CR1 1277 1404 -179 481 282 141 7 chr3 199146820 199146969 -28377609 + MIR3 SINE MIR 25 193 -15 344 175 19 136 chr3 199147009 199147112 -28377466 - MER5A DNA MER1_type -5 184 94 231 316 63 11 chr3 199147179 199147274 -28377304 + L2 LINE L2 3168 3267 -5 225 0 0 0 chr3 199148610 199148635 -28375943 + (T)n Simple_repeat Simple_repeat 1 25 0 205 284 60 15 chr3 199149271 199149338 -28375240 - L2 LINE L2 -13 3259 3190 2102 68 0 4 chr3 199149495 199149760 -28374818 + AluY SINE Alu 39 302 -9 1739 197 0 0 chr3 199149917 199150262 -28374316 - AluJb SINE Alu 0 312 1 25 0 0 0 chr3 199150273 199150298 -28374280 + AT_rich Low_complexity Low_complexity 1 25 0 186 103 0 0 chr3 199150840 199150869 -28373709 + (TG)n Simple_repeat Simple_repeat 1 29 0 4225 119 14 2 chr3 199151048 199151953 -28372625 + L1PA11 LINE L1 4975 5887 -287 379 91 0 0 chr3 199151984 199152039 -28372539 - MLT2A1 LTR ERVL 0 444 390 549 0 0 0 chr3 199152114 199152177 -28372401 + MLT2A1 LTR ERVL 1 63 -381 31 107 0 0 chr3 199152205 199152327 -28372251 + AT_rich Low_complexity Low_complexity 1 122 0 2223 217 129 14 chr3 199152431 199153122 -28371456 + L1MC4 LINE L1 6885 7654 -388 258 269 30 0 chr3 199153135 199153202 -28371376 + GA-rich Low_complexity Low_complexity 5 73 0 201 154 0 0 chr3 199153670 199153709 -28370869 + CT-rich Low_complexity Low_complexity 1 39 0 42419 32 23 1 chr3 199153989 199159998 -28364580 - L1PA2 LINE L1 -2 6153 13 321 26 0 0 chr3 199160067 199160105 -28364473 + (TA)n Simple_repeat Simple_repeat 1 38 0 316 323 21 0 chr3 199160173 199160269 -28364309 - L1MC4 LINE L1 -1331 6711 6614 * 324 283 0 22 chr3 199160201 199160293 -28364285 + L1MC4 LINE L1 6614 6703 -1339 180 176 0 0 chr3 199160317 199160351 -28364227 + (TA)n Simple_repeat Simple_repeat 2 35 0 4078 150 12 3 chr3 199160353 199161031 -28363547 - L1PA15 LINE L1 0 6165 5482 26 74 0 0 chr3 199161109 199161163 -28363415 + AT_rich Low_complexity Low_complexity 1 54 0 241 337 82 0 chr3 199161315 199161413 -28363165 - MIR SINE MIR -65 197 92 1065 161 22 6 chr3 199161431 199161611 -28362967 - MSTB1 LTR MaLR 0 432 250 740 173 0 0 chr3 199161618 199161745 -28362833 - MSTB1 LTR MaLR -302 130 4 4249 174 50 30 chr3 199163461 199164761 -28359817 - L1MB2 LINE L1 0 6171 4839 631 62 31 0 chr3 199166950 199167046 -28357532 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 24 0 0 0 chr3 199171828 199171852 -28352726 + AT_rich Low_complexity Low_complexity 1 24 0 27 73 0 0 chr3 199172207 199172262 -28352316 + AT_rich Low_complexity Low_complexity 1 55 0 25 75 0 0 chr3 199173975 199174028 -28350550 + AT_rich Low_complexity Low_complexity 1 53 0 296 247 71 88 chr3 199174237 199174419 -28350159 - MIR SINE MIR -33 229 51 26 0 0 0 chr3 199175925 199175951 -28348627 + AT_rich Low_complexity Low_complexity 1 26 0 216 182 0 0 chr3 199177427 199177471 -28347107 + A-rich Low_complexity Low_complexity 1 44 0 25 51 0 0 chr3 199179223 199179262 -28345316 + AT_rich Low_complexity Low_complexity 1 39 0 264 317 0 12 chr3 199181171 199181253 -28343325 + GA-rich Low_complexity Low_complexity 5 85 0 755 356 130 17 chr3 199182847 199183431 -28341147 - L3 LINE CR1 -314 1263 614 206 357 12 0 chr3 199183594 199183678 -28340900 - L2 LINE L2 0 3313 3229 663 103 0 0 chr3 199184201 199184298 -28340280 + (TA)n Simple_repeat Simple_repeat 1 97 0 392 298 132 12 chr3 199184384 199184626 -28339952 + L1M4 LINE L1 4566 4836 -1310 267 294 99 48 chr3 199184698 199185031 -28339547 + L1M4 LINE L1 4958 5307 -839 227 372 54 0 chr3 199185048 199185177 -28339401 + HAL1 LINE L1 6 141 -2366 30 27 0 0 chr3 199185315 199185352 -28339226 + AT_rich Low_complexity Low_complexity 1 37 0 225 302 102 68 chr3 199185535 199186230 -28338348 + HAL1b LINE L1 113 831 -517 1532 255 72 77 chr3 199186501 199187384 -28337194 + L1MC5 LINE L1 6643 7521 -440 346 354 23 29 chr3 199187486 199187661 -28336917 + L1ME3A LINE L1 5988 6161 -9 482 291 47 7 chr3 199187683 199187956 -28336622 + HAL1 LINE L1 1288 1607 -900 427 299 115 38 chr3 199187994 199188255 -28336323 + HAL1 LINE L1 1811 2091 -416 455 288 70 14 chr3 199188328 199188649 -28335929 - L1ME LINE L1 -517 5604 5269 193 276 35 35 chr3 199191141 199191228 -28333350 + L2 LINE L2 2553 2639 -675 213 354 82 77 chr3 199191251 199191652 -28332926 + L2 LINE L2 2828 3230 -42 1415 205 10 36 chr3 199192783 199193090 -28331488 + AluJo SINE Alu 3 301 -11 265 328 8 50 chr3 199193435 199193504 -28331074 + L2 LINE L2 3158 3221 -51 2167 194 41 49 chr3 199193504 199193786 -28330792 + MLT1D LTR MaLR 1 279 -226 2176 107 0 7 chr3 199193786 199194084 -28330494 + AluSg SINE Alu 1 296 -14 2167 194 41 49 chr3 199194084 199194310 -28330268 + MLT1D LTR MaLR 279 505 0 265 328 8 50 chr3 199194310 199194359 -28330219 + L2 LINE L2 3221 3271 -1 201 121 0 0 chr3 199194510 199194543 -28330035 + (GA)n Simple_repeat Simple_repeat 2 34 0 185 330 34 51 chr3 199194855 199194973 -28329605 - L2 LINE L2 -557 2757 2642 217 238 0 0 chr3 199195003 199195045 -28329533 - MIR SINE MIR -65 197 156 2749 19 0 0 chr3 199195246 199195557 -28329021 + AluYa5 SINE Alu 1 311 0 22 0 0 0 chr3 199195639 199195661 -28328917 + AT_rich Low_complexity Low_complexity 1 22 0 336 284 248 7 chr3 199196371 199196512 -28328066 + MER5A DNA MER1_type 9 183 -6 21 0 0 0 chr3 199197137 199197158 -28327420 + AT_rich Low_complexity Low_complexity 1 21 0 241 208 0 0 chr3 199197604 199197652 -28326926 + MIR SINE MIR 87 134 -74 204 333 97 11 chr3 199197806 199197899 -28326679 + MIR SINE MIR 35 135 -73 680 119 9 18 chr3 199197966 199198075 -28326503 + THE1C LTR MaLR 1 108 -267 923 127 24 42 chr3 199198080 199198246 -28326332 + THE1C LTR MaLR 213 375 0 389 319 53 13 chr3 199198251 199198438 -28326140 - MIR SINE MIR -55 207 15 324 217 17 0 chr3 199198563 199198623 -28325955 - AluJ/FLAM SINE Alu -241 61 1 2879 81 2 48 chr3 199198806 199199225 -28325353 + MLT2A1 LTR ERVL 1 400 -44 4866 74 11 0 chr3 199199225 199199848 -28324730 + HERVL LTR ERVL 2613 3242 -2412 4530 70 18 2 chr3 199199843 199200443 -28324135 + HERVL LTR ERVL 5043 5652 -2 * 312 377 85 11 chr3 199200901 199201182 -28323396 - L2 LINE L2 -609 2705 2404 295 146 12 134 chr3 199201903 199201944 -28322634 - MER5A DNA MER1_type -80 109 81 2264 101 7 7 chr3 199201944 199202251 -28322327 - AluSx SINE Alu -5 307 1 295 146 12 134 chr3 199202251 199202291 -28322287 - MER5A DNA MER1_type -108 81 38 1900 95 32 35 chr3 199202317 199202624 -28321954 - AluY SINE Alu 0 306 1 1468 228 11 25 chr3 199202762 199203118 -28321460 - MLT1A2 LTR MaLR 0 374 24 294 333 15 22 chr3 199203117 199203252 -28321326 - LTR16C LTR ERVL -67 424 291 * 219 69 0 0 chr3 199203390 199203419 -28321159 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 334 363 50 0 chr3 199205950 199206110 -28318468 - MIR3 SINE MIR -28 180 13 243 395 19 56 chr3 199206166 199206328 -28318250 + L2 LINE L2 3100 3255 -17 1065 221 4 13 chr3 199207670 199207896 -28316682 + MER58A DNA MER1_type 1 224 0 302 312 113 54 chr3 199208107 199208293 -28316285 + MIR SINE MIR 25 221 -41 2099 127 0 0 chr3 199208296 199208587 -28315991 + AluSx SINE Alu 5 295 -17 1655 218 13 30 chr3 199208697 199209069 -28315509 - MLT1A2 LTR MaLR -8 366 1 689 132 9 0 chr3 199209492 199209606 -28314972 - L1MB5 LINE L1 0 6174 6060 1491 229 46 77 chr3 199209615 199210242 -28314336 - L1MB7 LINE L1 -1 6183 5580 618 272 45 14 chr3 199210339 199210563 -28314015 - L1ME LINE L1 -396 5758 5536 213 182 40 20 chr3 199210586 199210685 -28313893 + (TAAA)n Simple_repeat Simple_repeat 3 103 0 268 221 59 81 chr3 199210716 199210852 -28313726 + MIR SINE MIR 92 224 -38 999 269 29 5 chr3 199211628 199211917 -28312661 + L1MCa LINE L1 1 262 -5783 852 201 10 10 chr3 199211909 199212103 -28312475 + L1MC3 LINE L1 5668 5861 -1924 * 479 111 49 7 chr3 199212103 199212247 -28312331 + CT-rich Low_complexity Low_complexity 1 150 0 290 129 16 0 chr3 199212253 199212315 -28312263 + (CTTG)n Simple_repeat Simple_repeat 1 63 0 1738 142 42 0 chr3 199212315 199212576 -28312002 - AluSx SINE Alu -40 272 1 5002 177 56 35 chr3 199212576 199213746 -28310832 + L1MC3 LINE L1 5858 7051 -734 29 60 0 0 chr3 199214228 199214278 -28310300 + AT_rich Low_complexity Low_complexity 1 50 0 673 122 24 0 chr3 199215843 199215966 -28308612 + CT-rich Low_complexity Low_complexity 3 128 0 600 188 0 60 chr3 199215982 199216115 -28308463 - FLAM_C SINE Alu -8 125 1 219 321 145 13 chr3 199216534 199216693 -28307885 + L2 LINE L2 2066 2245 -1069 195 384 8 16 chr3 199217376 199217501 -28307077 - MIR SINE MIR -57 151 28 2063 114 3 17 chr3 199218728 199219025 -28305553 + AluSx SINE Alu 1 293 -19 279 263 51 34 chr3 199219526 199219644 -28304934 - MIR SINE MIR -44 218 99 273 98 0 0 chr3 199221600 199221641 -28302937 + (TG)n Simple_repeat Simple_repeat 1 41 0 307 337 90 30 chr3 199221772 199221938 -28302640 + L2 LINE L2 2764 2939 -375 739 295 140 96 chr3 199221961 199222489 -28302089 - MLT1H1 LTR MaLR 0 595 3 2008 136 0 3 chr3 199224846 199225132 -28299446 + AluSx SINE Alu 1 285 -27 301 233 47 0 chr3 199225137 199225223 -28299355 + Alu SINE Alu 212 301 0 727 210 0 0 chr3 199225804 199225923 -28298655 + FLAM_C SINE Alu 3 121 -22 260 49 49 0 chr3 199225923 199225964 -28298614 + (TAAA)n Simple_repeat Simple_repeat 2 44 0 209 303 48 48 chr3 199226065 199226230 -28298348 - L2 LINE L2 -240 3032 2868 271 383 88 16 chr3 199226266 199226517 -28298061 - L2 LINE L2 -649 2665 2397 305 376 77 0 chr3 199226860 199227041 -28297537 - L2 LINE L2 -922 2392 2198 23 0 0 0 chr3 199227809 199227832 -28296746 + AT_rich Low_complexity Low_complexity 1 23 0 199 266 105 81 chr3 199228199 199228323 -28296255 - L2 LINE L2 -4 3309 3183 237 277 0 31 chr3 199228801 199228866 -28295712 + CT-rich Low_complexity Low_complexity 2 64 0 258 32 0 0 chr3 199229114 199229145 -28295433 + (TG)n Simple_repeat Simple_repeat 2 32 0 183 218 0 73 chr3 199229175 199229230 -28295348 - L2 LINE L2 -324 2948 2898 204 362 48 32 chr3 199229539 199229727 -28294851 - L2 LINE L2 -426 2888 2698 1206 292 84 17 chr3 199230003 199230063 -28294515 + MER77 LTR ERV1 192 247 -500 279 0 0 0 chr3 199230063 199230094 -28294484 + (CAAT)n Simple_repeat Simple_repeat 1 31 0 1206 292 84 17 chr3 199230094 199230483 -28294095 + MER77 LTR ERV1 247 736 -11 338 298 0 24 chr3 199230513 199230597 -28293981 + MIR SINE MIR 10 91 -171 311 125 0 0 chr3 199231355 199231403 -28293175 - L1MC5 LINE L1 -733 7228 7181 518 279 111 5 chr3 199231464 199231654 -28292924 - MIR SINE MIR 0 262 53 289 85 17 17 chr3 199231663 199231722 -28292856 + (TA)n Simple_repeat Simple_repeat 2 60 0 24 53 0 0 chr3 199232256 199232294 -28292284 + AT_rich Low_complexity Low_complexity 1 38 0 1771 89 0 13 chr3 199233139 199233375 -28291203 - AluSg1 SINE Alu -76 233 1 242 284 85 35 chr3 199234065 199234206 -28290372 - MIR SINE MIR -16 246 99 840 190 13 0 chr3 199234533 199234691 -28289887 + L1MA4 LINE L1 5844 6003 -297 259 301 110 41 chr3 199234838 199235057 -28289521 + MIR SINE MIR 29 262 0 14312 192 40 28 chr3 199236147 199236379 -28288199 - L1MA4 LINE L1 -281 6201 5973 240 111 0 0 chr3 199236379 199236415 -28288163 + (TA)n Simple_repeat Simple_repeat 1 36 0 14312 192 40 28 chr3 199236415 199237322 -28287256 - L1MA4 LINE L1 -509 5973 5078 2254 60 3 11 chr3 199237322 199237636 -28286942 + AluY SINE Alu 1 312 0 14312 192 40 28 chr3 199237636 199240449 -28284129 - L1MA4 LINE L1 -1404 5078 2299 2251 105 39 33 chr3 199240449 199240811 -28283767 - THE1B LTR MaLR 0 364 1 14312 192 40 28 chr3 199240811 199241952 -28282626 - L1MA4 LINE L1 -4183 2299 1017 227 0 44 44 chr3 199241952 199241997 -28282581 + (TTA)n Simple_repeat Simple_repeat 3 47 0 14312 192 40 28 chr3 199241997 199242463 -28282115 - L1MA4 LINE L1 -5465 1017 558 666 168 30 15 chr3 199242476 199242607 -28281971 - L1MA4 LINE L1 -5195 133 1 2514 193 18 14 chr3 199242716 199243214 -28281364 - L1M3f LINE L1 -4808 520 21 1974 133 11 0 chr3 199243214 199243535 -28281043 - AluSg SINE Alu 0 324 1 541 206 0 9 chr3 199244399 199244506 -28280072 - L1M3f LINE L1 -5180 148 43 1057 278 77 57 chr3 199244665 199245119 -28279459 + L2 LINE L2 2219 2663 -650 1624 149 58 14 chr3 199245119 199245395 -28279183 - AluJb SINE Alu -24 288 1 1057 278 77 57 chr3 199245395 199245562 -28279016 + L2 LINE L2 2663 3311 -2 2235 205 70 28 chr3 199246866 199247407 -28277171 + MER90 LTR ERV1 51 614 0 182 200 25 0 chr3 199247681 199247721 -28276857 - MER5A DNA MER1_type -88 101 61 792 228 64 11 chr3 199247726 199248007 -28276571 - AluSp SINE Alu -7 296 1 22 0 0 0 chr3 199248511 199248533 -28276045 + AT_rich Low_complexity Low_complexity 1 22 0 4280 134 47 36 chr3 199248534 199249349 -28275229 - L1MA5A LINE L1 -1 6296 5473 890 158 7 0 chr3 199249354 199249493 -28275085 - FRAM SINE Alu -24 152 13 1296 137 1 41 chr3 199249499 199249704 -28274874 - L1MA5A LINE L1 -743 5403 5303 207 0 0 0 chr3 199249704 199249727 -28274851 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1296 137 1 41 chr3 199249727 199249898 -28274680 - L1MA5A LINE L1 -843 5303 5127 377 315 0 0 chr3 199249917 199250028 -28274550 + LTR33 LTR ERVL 386 496 -25 751 244 115 97 chr3 199250143 199250261 -28274317 + L2 LINE L2 2671 2785 -528 1755 178 23 0 chr3 199250261 199250564 -28274014 + AluSp SINE Alu 3 312 -1 751 244 115 97 chr3 199250564 199251025 -28273553 + L2 LINE L2 2785 3311 -2 186 103 0 0 chr3 199251101 199251130 -28273448 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 540 195 14 14 chr3 199251416 199251625 -28272953 - L1MD2 LINE L1 -69 6290 6033 3129 111 44 6 chr3 199251786 199252265 -28272313 - LOR1a LTR ERV1 0 497 1 356 103 17 0 chr3 199253227 199253285 -28271293 + (CA)n Simple_repeat Simple_repeat 2 60 0 2742 136 33 0 chr3 199253406 199253825 -28270753 - LOR1a LTR ERV1 0 497 65 925 109 23 0 chr3 199253827 199253955 -28270623 + AluSg SINE Alu 1 131 -179 514 223 136 0 chr3 199254211 199254314 -28270264 + FLAM_A SINE Alu 6 122 -20 1621 220 76 31 chr3 199254335 199254849 -28269729 + L1ME3A LINE L1 5621 6157 -13 292 295 39 32 chr3 199255113 199255269 -28269309 + L2 LINE L2 1615 1771 -1543 297 301 139 48 chr3 199255797 199255963 -28268615 + MER20B DNA MER1_type 1 181 -602 35 71 0 0 chr3 199255976 199256046 -28268532 + AT_rich Low_complexity Low_complexity 1 70 0 266 105 0 0 chr3 199256046 199256084 -28268494 - L1P4 LINE L1 -498 5665 5628 * 4919 139 8 11 chr3 199256074 199257270 -28267308 - L1P4 LINE L1 -499 5675 4483 * 12089 154 8 2 chr3 199257262 199259372 -28265206 + L1P4 LINE L1 2342 4463 -1683 2230 123 0 0 chr3 199259588 199259896 -28264682 - AluSc SINE Alu -1 308 1 320 287 179 62 chr3 199261039 199261380 -28263198 - L2 LINE L2 -12 3301 2921 2556 36 7 3 chr3 199261471 199261780 -28262798 + AluY SINE Alu 1 310 -1 528 16 0 0 chr3 199261780 199261841 -28262737 + (TA)n Simple_repeat Simple_repeat 2 62 0 1828 237 94 62 chr3 199262152 199262496 -28262082 + MER77 LTR ERV1 23 393 -212 1388 225 131 3 chr3 199262496 199262847 -28261731 - MSTD LTR MaLR 0 396 1 1828 237 94 62 chr3 199262847 199263067 -28261511 + MER77 LTR ERV1 393 605 0 295 234 0 13 chr3 199263069 199263146 -28261432 - MIR SINE MIR -7 255 180 1773 185 55 35 chr3 199263146 199263513 -28261065 - MSTD LTR MaLR 0 396 23 595 314 0 6 chr3 199263552 199263711 -28260867 - MIR SINE MIR -78 184 27 324 320 0 49 chr3 199264154 199264276 -28260302 - MIR SINE MIR -130 132 17 2381 69 7 0 chr3 199264654 199264957 -28259621 + AluSp SINE Alu 1 305 -8 339 282 15 84 chr3 199265206 199265408 -28259170 + L2 LINE L2 3126 3313 0 26 82 0 0 chr3 199266857 199266918 -28257660 + AT_rich Low_complexity Low_complexity 1 61 0 371 376 21 35 chr3 199267102 199267392 -28257186 + L2 LINE L2 358 643 -2671 385 226 71 56 chr3 199267504 199267738 -28256840 + LTR48 LTR ERV1 1 242 -402 654 281 279 6 chr3 199268050 199268416 -28256162 + L2 LINE L2 2846 3311 -2 207 69 0 0 chr3 199268492 199268521 -28256057 + (TCTA)n Simple_repeat Simple_repeat 2 30 0 1009 289 63 20 chr3 199268640 199269083 -28255495 + LTR16B LTR ERVL 1 462 -2 2093 148 0 0 chr3 199269209 199269512 -28255066 - AluSx SINE Alu -9 303 1 213 329 57 32 chr3 199269901 199270059 -28254519 + L2 LINE L2 1546 1707 -1607 370 251 101 73 chr3 199270354 199270533 -28254045 - L1ME3A LINE L1 0 6170 5987 968 264 41 8 chr3 199270537 199270839 -28253739 - L1ME3A LINE L1 -269 5901 5577 29 60 0 0 chr3 199271110 199271160 -28253418 + AT_rich Low_complexity Low_complexity 1 50 0 36 62 0 0 chr3 199271320 199271384 -28253194 + AT_rich Low_complexity Low_complexity 1 64 0 28 48 0 0 chr3 199271807 199271849 -28252729 + AT_rich Low_complexity Low_complexity 1 42 0 663 314 91 47 chr3 199272019 199272525 -28252053 - MLT1K LTR MaLR -12 576 49 1911 228 70 45 chr3 199273845 199274447 -28250131 - MLT1E3 LTR MaLR -3 621 5 445 164 112 82 chr3 199276544 199276678 -28247900 + L2 LINE L2 3176 3313 0 7749 220 30 12 chr3 199276730 199279251 -28245327 - L1PA3 LINE L1 -3 6868 4293 670 220 26 21 chr3 199279266 199279457 -28245121 - L1M4 LINE L1 -3280 3102 2911 * 1333 240 58 14 chr3 199279454 199279817 -28244761 - L1PA3 LINE L1 -6478 385 7 195 42 0 0 chr3 199279825 199279849 -28244729 + (CAAAA)n Simple_repeat Simple_repeat 3 26 0 5840 193 30 14 chr3 199279849 199281025 -28243553 - L1M4 LINE L1 -5172 1212 18 378 215 0 0 chr3 199281028 199281107 -28243471 - L1 LINE L1 -3815 2331 2253 23 0 0 0 chr3 199281126 199281149 -28243429 + AT_rich Low_complexity Low_complexity 1 23 0 2318 114 3 0 chr3 199281214 199281522 -28243056 + AluSx SINE Alu 1 309 -3 27 62 0 0 chr3 199281523 199281571 -28243007 + AT_rich Low_complexity Low_complexity 1 48 0 327 119 0 0 chr3 199281694 199281751 -28242827 - MLT2B3 LTR ERVL 0 554 464 188 122 24 0 chr3 199281761 199281802 -28242776 + (TA)n Simple_repeat Simple_repeat 2 43 0 50 31 0 0 chr3 199283927 199283991 -28240587 + AT_rich Low_complexity Low_complexity 1 64 0 413 300 82 39 chr3 199284038 199284269 -28240309 - L1ME2 LINE L1 0 6164 5924 27 49 0 0 chr3 199285708 199285749 -28238829 + AT_rich Low_complexity Low_complexity 1 41 0 184 231 0 0 chr3 199285769 199285808 -28238770 - MER5A DNA MER1_type -1 188 150 207 262 0 0 chr3 199285851 199285893 -28238685 - MER5A DNA MER1_type -141 48 7 271 265 265 10 chr3 199287832 199288028 -28236550 + L1MC4 LINE L1 7797 8042 0 * 525 250 69 15 chr3 199288025 199288229 -28236349 + HAL1 LINE L1 2292 2506 -1 372 219 29 48 chr3 199289636 199289741 -28234837 + MLT1J2 LTR MaLR 344 446 -4 808 301 77 11 chr3 199290206 199290575 -28234003 + LTR33A LTR ERVL 88 481 -42 2010 176 31 34 chr3 199290575 199291137 -28233441 + MLT2A2 LTR ERVL 1 554 0 893 209 69 75 chr3 199293325 199293724 -28230854 + MLT1A1 LTR MaLR 1 355 -10 1281 127 5 11 chr3 199293766 199293955 -28230623 + AluSx SINE Alu 5 192 -120 2670 166 86 37 chr3 199294141 199294737 -28229841 + MER4D LTR ERV1 279 903 0 237 281 0 0 chr3 199295806 199295863 -28228715 + MIR SINE MIR 3 59 -203 1759 163 0 36 chr3 199296525 199296831 -28227747 + AluJo SINE Alu 1 295 -17 23 33 0 0 chr3 199297071 199297101 -28227477 + AT_rich Low_complexity Low_complexity 1 30 0 28 0 0 0 chr3 199298250 199298278 -28226300 + AT_rich Low_complexity Low_complexity 1 28 0 235 293 0 0 chr3 199298640 199298698 -28225880 + MIR3 SINE MIR 122 179 -29 535 205 181 97 chr3 199298711 199298789 -28225789 + MER34C LTR ERV1 47 117 -468 2206 176 15 2 chr3 199298789 199299187 -28225391 + MER57A LTR ERV1 1 403 0 535 205 181 97 chr3 199299187 199299605 -28224973 + MER34C LTR ERV1 117 585 0 3106 141 79 0 chr3 199299728 199300233 -28224345 - MER34C LTR ERV1 -6 579 35 21 36 0 0 chr3 199300479 199300507 -28224071 + AT_rich Low_complexity Low_complexity 1 28 0 424 241 103 0 chr3 199301025 199301141 -28223437 + MIR SINE MIR 61 188 -74 1274 236 76 35 chr3 199301382 199301776 -28222802 - L1ME1 LINE L1 -51 6115 5706 650 251 6 6 chr3 199302280 199302443 -28222135 - MLT1I LTR MaLR -245 164 2 410 342 31 19 chr3 199302468 199302725 -28221853 - L1M4 LINE L1 -1214 5326 5067 1741 200 8 35 chr3 199302945 199303153 -28221425 - MLT1A1 LTR MaLR 0 365 170 2202 122 73 14 chr3 199303153 199303497 -28221081 - THE1B LTR MaLR 0 364 1 1741 200 8 35 chr3 199303497 199303663 -28220915 - MLT1A1 LTR MaLR -195 170 1 1855 258 87 23 chr3 199303732 199304994 -28219584 - L1MDa LINE L1 -3327 3213 1844 2391 150 27 5 chr3 199305054 199305455 -28219123 - MSTA LTR MaLR -2 426 17 8603 175 24 7 chr3 199305472 199305668 -28218910 - MSTA-int LTR MaLR -5 1646 1455 2142 133 23 47 chr3 199305668 199306052 -28218526 - THE1C LTR MaLR 0 375 1 8603 175 24 7 chr3 199306052 199307473 -28217105 - MSTA-int LTR MaLR -196 1455 1 2739 125 7 0 chr3 199307479 199307894 -28216684 - MSTA LTR MaLR -10 418 1 324 316 52 57 chr3 199307899 199308111 -28216467 + L1MEc LINE L1 156 366 -6030 372 248 91 16 chr3 199308134 199308255 -28216323 - L1MDa LINE L1 -5904 626 497 2188 132 0 0 chr3 199308315 199308618 -28215960 - AluSg SINE Alu -7 303 1 36 70 0 0 chr3 199308729 199308800 -28215778 + AT_rich Low_complexity Low_complexity 1 71 0 268 240 40 0 chr3 199308834 199308909 -28215669 - L1ME1 LINE L1 -475 5646 5569 39 68 0 0 chr3 199309009 199309083 -28215495 + AT_rich Low_complexity Low_complexity 1 74 0 2301 182 25 19 chr3 199309441 199309924 -28214654 + MER41D LTR ERV1 1 486 -71 881 212 0 0 chr3 199309905 199310070 -28214508 + MER41D LTR ERV1 393 557 0 * 226 223 39 39 chr3 199310233 199310336 -28214242 + (TTTAA)n Simple_repeat Simple_repeat 4 106 0 341 189 44 44 chr3 199310908 199310998 -28213580 + L1MC4 LINE L1 6612 6701 -1341 280 129 0 32 chr3 199310999 199311061 -28213517 + (TA)n Simple_repeat Simple_repeat 2 61 0 234 300 25 0 chr3 199311620 199311700 -28212878 + GA-rich Low_complexity Low_complexity 3 84 0 186 43 0 0 chr3 199311921 199311944 -28212634 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 771 201 0 8 chr3 199312199 199312333 -28212245 - FLAM_C SINE Alu 0 133 1 2315 88 24 49 chr3 199312516 199312925 -28211653 + MLT2A1 LTR ERVL 1 399 -45 4667 72 11 0 chr3 199312925 199313546 -28211032 + HERVL LTR ERVL 2613 3240 -2414 1996 121 15 6 chr3 199313543 199313883 -28210695 + HERVL LTR ERVL 5043 5385 -269 * 1664 215 76 37 chr3 199314158 199314674 -28209904 + MER90 LTR ERV1 79 614 0 335 210 147 84 chr3 199314878 199314980 -28209598 - MER5A DNA MER1_type 0 189 74 2288 101 7 7 chr3 199314980 199315287 -28209291 - AluSx SINE Alu -5 307 1 335 210 147 84 chr3 199315287 199315327 -28209251 - MER5A DNA MER1_type -115 74 38 1896 95 32 35 chr3 199315353 199315660 -28208918 - AluY SINE Alu 0 306 1 1304 233 11 25 chr3 199315798 199316154 -28208424 - MLT1A2 LTR MaLR 0 374 24 234 0 0 0 chr3 199316187 199316213 -28208365 + (A)n Simple_repeat Simple_repeat 1 26 0 321 274 0 0 chr3 199316215 199316288 -28208290 - LTR16C LTR ERVL -128 363 291 219 69 0 0 chr3 199316426 199316455 -28208123 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 336 363 50 0 chr3 199318986 199319146 -28205432 - MIR3 SINE MIR -28 180 13 242 395 19 56 chr3 199319202 199319364 -28205214 + L2 LINE L2 3100 3255 -17 1057 221 4 13 chr3 199320705 199320931 -28203647 + MER58A DNA MER1_type 1 224 0 296 312 113 54 chr3 199321142 199321328 -28203250 + MIR SINE MIR 25 221 -41 2110 127 0 0 chr3 199321331 199321622 -28202956 + AluSx SINE Alu 5 295 -17 1448 216 19 32 chr3 199321732 199322102 -28202476 - MLT1A2 LTR MaLR -8 366 2 5605 221 16 8 chr3 199322102 199323529 -28201049 - L1 LINE L1 -953 5429 3991 2328 134 3 3 chr3 199323695 199324054 -28200524 + L1PB3 LINE L1 5789 6147 -7 27 49 0 0 chr3 199324054 199324095 -28200483 + AT_rich Low_complexity Low_complexity 1 41 0 738 144 69 17 chr3 199324360 199324533 -28200045 - L1MB3 LINE L1 0 6183 6002 225 269 13 13 chr3 199324600 199324678 -28199900 - LTR51 LTR ERV1 -14 657 580 1105 204 19 14 chr3 199324849 199325065 -28199513 - MER101B LTR ERV1 -353 217 1 1615 152 27 3 chr3 199325067 199325363 -28199215 - L1MB3 LINE L1 -416 5755 5453 1324 161 16 4 chr3 199325363 199325605 -28198973 - MER39 LTR ERV1 0 707 463 3192 195 25 26 chr3 199325635 199326322 -28198256 + MER21B LTR ERV1 167 852 -11 3438 222 46 16 chr3 199326339 199327557 -28197021 - L1 LINE L1 -2654 3728 2444 1846 194 9 3 chr3 199327557 199327903 -28196675 + MER7A DNA MER2_type 1 346 0 3438 222 46 16 chr3 199327903 199328338 -28196240 - L1 LINE L1 -3938 2444 2023 24 67 0 0 chr3 199328668 199328713 -28195865 + AT_rich Low_complexity Low_complexity 1 45 0 444 162 14 0 chr3 199328998 199329072 -28195506 + MLT1J2 LTR MaLR 68 142 -308 235 221 26 13 chr3 199329148 199329225 -28195353 - LTR33A LTR ERVL -13 510 433 1142 249 126 43 chr3 199329402 199329863 -28194715 + MLT1F1 LTR MaLR 69 567 0 2092 177 179 29 chr3 199330104 199330624 -28193954 - LTR18B LTR ERVL 0 614 17 695 203 35 35 chr3 199330699 199330901 -28193677 - LTR52 LTR ERVL -219 202 1 2282 118 3 0 chr3 199331321 199331626 -28192952 - AluSx SINE Alu -6 306 1 2163 142 0 0 chr3 199331936 199332245 -28192333 - AluSx SINE Alu -3 309 1 1163 333 42 22 chr3 199332262 199332859 -28191719 - ERVL LTR ERVL -436 5328 4720 310 260 65 24 chr3 199333154 199333277 -28191301 + MLT1J2 LTR MaLR 318 445 -5 746 146 15 51 chr3 199333452 199333589 -28190989 - FLAM_C SINE Alu -1 132 1 1225 172 115 96 chr3 199334322 199334635 -28189943 - MSTC LTR MaLR 0 428 104 2037 112 36 10 chr3 199334635 199334939 -28189639 - AluSq SINE Alu -1 312 1 1225 172 115 96 chr3 199334939 199335043 -28189535 - MSTC LTR MaLR -324 104 3 2212 102 7 0 chr3 199335413 199335707 -28188871 - AluSx SINE Alu -16 296 1 299 244 272 14 chr3 199335751 199335964 -28188614 + MLT1K LTR MaLR 313 580 -8 32 0 0 0 chr3 199336014 199336046 -28188532 + AT_rich Low_complexity Low_complexity 1 32 0 320 181 14 56 chr3 199336267 199336339 -28188239 - L1MC3 LINE L1 -1250 6535 6467 235 309 48 24 chr3 199336509 199336635 -28187943 - L1MCa LINE L1 -5955 471 343 381 309 99 6 chr3 199337248 199337410 -28187168 - MIR3 SINE MIR -1 207 31 3566 269 122 21 chr3 199338440 199340170 -28184408 + L2 LINE L2 1400 3307 -6 21 0 0 0 chr3 199341275 199341296 -28183282 + GC_rich Low_complexity Low_complexity 1 21 0 25 31 0 0 chr3 199341532 199341564 -28183014 + GC_rich Low_complexity Low_complexity 1 32 0 21 36 0 0 chr3 199341571 199341599 -28182979 + GC_rich Low_complexity Low_complexity 1 28 0 21 36 0 0 chr3 199341861 199341889 -28182689 + GC_rich Low_complexity Low_complexity 1 28 0 350 253 233 0 chr3 199342181 199342331 -28182247 + MIR SINE MIR 78 262 0 242 197 53 76 chr3 199342507 199342639 -28181939 + GA-rich Low_complexity Low_complexity 2 130 0 267 322 109 38 chr3 199343856 199344067 -28180511 - MIR SINE MIR -6 256 31 24 32 0 0 chr3 199344142 199344173 -28180405 + AT_rich Low_complexity Low_complexity 1 31 0 5350 121 36 12 chr3 199344183 199344493 -28180085 - L1PA13 LINE L1 -19 6144 5843 1925 134 49 3 chr3 199344493 199344777 -28179801 - AluSg SINE Alu -11 299 3 5350 121 36 12 chr3 199344777 199345898 -28178680 - L1PA13 LINE L1 -320 5843 4697 265 290 19 39 chr3 199346567 199346722 -28177856 + L1MC5 LINE L1 7294 7445 -516 821 344 55 30 chr3 199346759 199347449 -28177129 - HERV16 LTR ERVL -1654 4000 3294 665 220 0 0 chr3 199347460 199347592 -28176986 - FLAM_A SINE Alu -1 132 1 868 259 80 86 chr3 199347645 199348333 -28176245 - LTR41 LTR ERVL -6 767 84 1913 145 0 3 chr3 199348390 199348673 -28175905 - AluSx SINE Alu -30 282 1 970 340 57 30 chr3 199348777 199349444 -28175134 - HERV16 LTR ERVL -1905 3091 2573 683 280 48 5 chr3 199349548 199349734 -28174844 + MIR SINE MIR 69 262 0 304 378 35 0 chr3 199350301 199350444 -28174134 - L1ME LINE L1 -520 5601 5454 1980 151 29 35 chr3 199351340 199351717 -28172861 + THE1C LTR MaLR 1 375 0 268 287 33 25 chr3 199351809 199351931 -28172647 - LTR16C LTR ERVL -68 423 301 214 200 67 0 chr3 199352604 199352664 -28171914 - L2 LINE L2 -153 3160 3097 7121 204 30 14 chr3 199352780 199355264 -28169314 - L1PA13 LINE L1 -3079 3718 1183 1947 137 37 0 chr3 199355451 199355750 -28168828 + AluSx SINE Alu 1 310 -2 188 122 24 0 chr3 199356443 199356484 -28168094 + (TA)n Simple_repeat Simple_repeat 2 43 0 327 119 0 0 chr3 199356494 199356551 -28168027 + MLT2B3 LTR ERVL 464 554 0 2230 123 0 0 chr3 199356721 199357029 -28167549 - AluSc SINE Alu -1 308 1 21 0 0 0 chr3 199357922 199357943 -28166635 + AT_rich Low_complexity Low_complexity 1 21 0 24 32 0 0 chr3 199358638 199358669 -28165909 + AT_rich Low_complexity Low_complexity 1 31 0 352 309 61 12 chr3 199360339 199360504 -28164074 + L1M4 LINE L1 4664 4836 -1310 587 291 99 48 chr3 199360576 199360909 -28163669 + L1M4 LINE L1 4958 5307 -839 227 364 54 0 chr3 199360926 199361055 -28163523 + HAL1 LINE L1 6 141 -2366 30 27 0 0 chr3 199361193 199361230 -28163348 + AT_rich Low_complexity Low_complexity 1 37 0 339 282 15 84 chr3 199362824 199363026 -28161552 - L2 LINE L2 0 3313 3126 2369 72 7 0 chr3 199363272 199363577 -28161001 - AluSp SINE Alu -6 307 1 26 82 0 0 chr3 199364238 199364299 -28160279 + AT_rich Low_complexity Low_complexity 1 61 0 371 376 21 35 chr3 199364483 199364773 -28159805 + L2 LINE L2 358 643 -2671 1725 213 87 40 chr3 199364884 199365461 -28159117 + LTR48B LTR ERV1 1 604 -40 1161 175 0 18 chr3 199365466 199365689 -28158889 + MER4D LTR ERV1 1 219 -684 209 250 0 0 chr3 199365700 199365748 -28158830 + C-rich Low_complexity Low_complexity 1 48 0 6574 170 22 3 chr3 199366000 199367232 -28157346 - L1P LINE L1 -1560 4586 3332 196 291 82 53 chr3 199367957 199368163 -28156415 + L2 LINE L2 1990 2201 -1113 21 36 0 0 chr3 199369920 199369948 -28154630 + GC_rich Low_complexity Low_complexity 1 28 0 230 296 0 14 chr3 199369964 199370035 -28154543 + CT-rich Low_complexity Low_complexity 2 71 0 3470 224 15 8 chr3 199370578 199371365 -28153213 - MLT-int LTR MaLR -924 811 19 879 80 8 8 chr3 199371679 199371804 -28152774 + THE1B LTR MaLR 240 364 0 1745 210 31 35 chr3 199371806 199372465 -28152113 + L1M1 LINE L1 3438 4083 -3482 2666 124 0 5 chr3 199472944 199473340 -28051238 + L1PA13 LINE L1 5750 6143 -20 896 179 179 9 chr3 199473349 199473567 -28051011 + MER2 DNA MER2_type 85 339 -6 1987 138 18 61 chr3 199475083 199475475 -28049103 + THE1C LTR MaLR 1 375 0 726 281 150 65 chr3 199476214 199476533 -28048045 + LTR67 LTR ERVL 2 383 -174 2888 201 26 6 chr3 199476533 199477080 -28047498 + MER68 LTR ERV1 5 562 0 726 281 150 65 chr3 199477080 199477272 -28047306 + LTR67 LTR ERVL 383 557 0 607 302 93 9 chr3 199479130 199479355 -28045223 + MIR SINE MIR 9 252 -10 1823 179 10 0 chr3 199479640 199479941 -28044637 + AluSx SINE Alu 1 304 -8 22 70 0 0 chr3 199479970 199480013 -28044565 + AT_rich Low_complexity Low_complexity 1 43 0 202 315 0 19 chr3 199481339 199481393 -28043185 + MIR SINE MIR 17 69 -139 505 95 0 24 chr3 199481519 199481603 -28042975 - AluSp/q SINE Alu 0 313 232 213 277 175 24 chr3 199482694 199482860 -28041718 + L2 LINE L2 3118 3308 -5 202 378 0 11 chr3 199482963 199483053 -28041525 + L2 LINE L2 3225 3313 0 182 264 97 28 chr3 199483855 199483927 -28040651 + L2 LINE L2 3237 3313 0 1643 122 167 27 chr3 199484506 199484835 -28039743 + THE1C LTR MaLR 1 375 0 202 286 54 0 chr3 199486263 199486319 -28038259 + L2 LINE L2 3210 3268 -4 734 322 54 39 chr3 199486663 199486814 -28037764 + L3 LINE CR1 265 412 -1165 576 277 102 13 chr3 199486814 199487049 -28037529 - MIR SINE MIR -3 259 4 734 322 54 39 chr3 199487049 199487307 -28037271 + L3 LINE CR1 412 680 -897 279 258 43 43 chr3 199487543 199487636 -28036942 + L1ME LINE L1 5545 5640 -481 511 111 0 0 chr3 199487777 199487849 -28036729 + L1P4 LINE L1 5582 5653 -510 441 212 0 12 chr3 199487846 199487931 -28036647 - L1MCa LINE L1 -5770 656 573 * 3031 183 35 23 chr3 199487934 199488542 -28036036 - L1MCa LINE L1 -5811 615 1 575 335 43 14 chr3 199490029 199490238 -28034340 + MIR SINE MIR 20 234 -28 2182 211 80 10 chr3 199490975 199491641 -28032937 + L1ME4a LINE L1 4837 5538 -646 3135 182 26 11 chr3 199491693 199492358 -28032220 + L1MB8 LINE L1 5493 6167 -11 2237 125 0 0 chr3 199493778 199494091 -28030487 + AluSq SINE Alu 1 313 0 203 304 74 40 chr3 199494561 199494709 -28029869 - MIR3 SINE MIR -4 204 52 1174 231 48 37 chr3 199494927 199495385 -28029193 + MLT1B LTR MaLR 1 467 0 305 350 98 6 chr3 199495561 199495724 -28028854 - L2 LINE L2 -30 3283 3106 361 316 46 51 chr3 199496030 199496173 -28028405 - L2 LINE L2 -541 2773 2630 1987 48 8 0 chr3 199496173 199496424 -28028154 + L1PA5 LINE L1 5901 6153 -1 361 316 46 51 chr3 199496424 199496476 -28028102 - L2 LINE L2 -684 2630 2579 802 129 136 0 chr3 199496618 199496765 -28027813 + LTR47A LTR ERVL 286 452 0 3265 138 43 4 chr3 199497121 199497628 -28026950 + MER1A DNA MER1_type 1 527 0 2455 179 96 8 chr3 199497664 199498177 -28026401 + MER68 LTR ERV1 3 560 -2 1674 186 0 17 chr3 199498862 199499163 -28025415 + AluJo SINE Alu 1 296 -16 330 115 0 0 chr3 199499881 199499933 -28024645 + (CA)n Simple_repeat Simple_repeat 2 53 0 1538 229 72 32 chr3 199500056 199500308 -28024270 + MER39 LTR ERV1 259 500 -207 2117 94 7 0 chr3 199500308 199500596 -28023982 + AluSq SINE Alu 1 290 -23 1538 229 72 32 chr3 199500596 199500764 -28023814 + MER39 LTR ERV1 500 699 -8 1687 186 52 6 chr3 199500764 199501113 -28023465 + MLT1A1 LTR MaLR 1 365 0 255 326 31 16 chr3 199501192 199501321 -28023257 + L1ME4a LINE L1 5541 5671 -450 235 202 24 24 chr3 199501394 199501478 -28023100 + GA-rich Low_complexity Low_complexity 3 86 0 364 254 85 51 chr3 199501498 199501675 -28022903 + L1ME4a LINE L1 5745 5927 -194 32 26 0 0 chr3 199501765 199501804 -28022774 + AT_rich Low_complexity Low_complexity 1 39 0 24 77 0 0 chr3 199502790 199502842 -28021736 + AT_rich Low_complexity Low_complexity 1 52 0 25 0 0 0 chr3 199503468 199503493 -28021085 + AT_rich Low_complexity Low_complexity 1 25 0 190 225 300 0 chr3 199503795 199503875 -28020703 + L3 LINE CR1 1435 1538 -39 1591 185 3 7 chr3 199504523 199504809 -28019769 + AluJb SINE Alu 1 285 -27 26 0 0 0 chr3 199504809 199504835 -28019743 + AT_rich Low_complexity Low_complexity 1 26 0 1026 290 96 14 chr3 199505138 199505700 -28018878 - L1ME4a LINE L1 -5 6116 5509 1297 172 134 0 chr3 199506125 199506415 -28018163 + LTR56 LTR ERV1 43 371 -74 236 326 31 0 chr3 199506661 199506759 -28017819 + HAL1 LINE L1 37 137 -2370 1253 185 0 4 chr3 199506786 199507013 -28017565 + AluJb SINE Alu 82 307 -5 615 283 228 32 chr3 199507126 199508062 -28016516 + HAL1 LINE L1 249 1367 -1140 303 256 196 105 chr3 199508084 199508482 -28016096 + HAL1 LINE L1 1476 1836 -671 1497 220 3 10 chr3 199508482 199508787 -28015791 + AluJo SINE Alu 1 303 -9 2167 121 0 13 chr3 199508791 199509104 -28015474 + AluSc SINE Alu 1 309 0 303 256 196 105 chr3 199509104 199509567 -28015011 + HAL1 LINE L1 1838 2421 -86 1998 144 0 3 chr3 199509628 199509934 -28014644 - AluSx SINE Alu -7 305 1 336 266 47 81 chr3 199510823 199511018 -28013560 + MER41A LTR ERV1 97 292 -262 2156 194 5 0 chr3 199511018 199511395 -28013183 + MER66A-int LTR ERV1 6298 6676 0 1432 205 101 9 chr3 199511499 199511855 -28012723 + MER66A LTR ERV1 97 478 0 270 0 0 0 chr3 199513650 199513680 -28010898 + (T)n Simple_repeat Simple_repeat 1 30 0 184 241 56 0 chr3 199514624 199514678 -28009900 + MIR3 SINE MIR 151 207 -1 195 42 0 0 chr3 199515161 199515185 -28009393 + (TA)n Simple_repeat Simple_repeat 1 24 0 618 196 8 45 chr3 199515997 199516130 -28008448 + FLAM_C SINE Alu 2 129 -4 286 349 152 0 chr3 199516269 199516401 -28008177 + L2 LINE L2 3121 3272 0 4802 230 31 76 chr3 199516670 199517534 -28007044 - L1ME1 LINE L1 0 6239 5337 1570 180 56 3 chr3 199517534 199517856 -28006722 + MER44D DNA MER2_type 1 609 0 4802 230 31 76 chr3 199517856 199519466 -28005112 - L1ME1 LINE L1 -902 5337 3873 1074 137 0 0 chr3 199519512 199519673 -28004905 - AluSg/x SINE Alu -15 297 137 1452 232 83 22 chr3 199519693 199519730 -28004848 - L1ME1 LINE L1 -2412 3803 3770 2732 10 0 0 chr3 199519730 199520030 -28004548 - AluYa5 SINE Alu -11 300 1 1452 232 83 22 chr3 199520030 199520618 -28003960 - L1ME1 LINE L1 -2445 3770 3140 1910 166 26 31 chr3 199521329 199521480 -28003098 - MER31A LTR ERV1 -102 383 233 2066 121 3 7 chr3 199521480 199521778 -28002800 - AluSc SINE Alu -12 297 1 1910 166 26 31 chr3 199521778 199522011 -28002567 - MER31A LTR ERV1 -252 233 1 24 0 0 0 chr3 199523656 199523680 -28000898 + AT_rich Low_complexity Low_complexity 1 24 0 534 272 70 30 chr3 199523809 199524110 -28000468 - L1ME1 LINE L1 -3118 3097 2785 1657 195 29 125 chr3 199524144 199524657 -27999921 - LTR42 LTR ERVL -15 480 17 383 288 73 38 chr3 199524734 199525186 -27999392 - L1ME1 LINE L1 -3450 2765 2298 4442 170 21 11 chr3 199525310 199526135 -27998443 - L1MC2 LINE L1 -44 6300 5468 228 307 57 36 chr3 199526591 199526783 -27997795 - HAL1 LINE L1 -945 1562 1367 631 315 49 26 chr3 199526786 199527094 -27997484 - L1ME1 LINE L1 -4910 1295 981 26 101 0 0 chr3 199527477 199527566 -27997012 + AT_rich Low_complexity Low_complexity 1 89 0 26 64 0 0 chr3 199527657 199527704 -27996874 + AT_rich Low_complexity Low_complexity 1 47 0 294 336 168 0 chr3 199528041 199528184 -27996394 + MIR SINE MIR 84 250 -12 191 238 68 75 chr3 199528976 199529123 -27995455 + L2 LINE L2 3111 3256 -57 37 69 0 0 chr3 199529175 199529247 -27995331 + AT_rich Low_complexity Low_complexity 1 72 0 26 0 0 0 chr3 199529645 199529671 -27994907 + AT_rich Low_complexity Low_complexity 1 26 0 319 200 43 0 chr3 199529734 199529804 -27994774 - L1ME2 LINE L1 -18 6146 6074 479 299 63 0 chr3 199529817 199530038 -27994540 - L1ME1 LINE L1 -5453 943 709 21 36 0 0 chr3 199530655 199530683 -27993895 + AT_rich Low_complexity Low_complexity 1 28 0 24 32 0 0 chr3 199530818 199530849 -27993729 + AT_rich Low_complexity Low_complexity 1 31 0 333 256 13 0 chr3 199531205 199531283 -27993295 - MER103 DNA DNA -84 82 4 415 218 0 0 chr3 199531393 199531480 -27993098 - MER5A DNA MER1_type -83 106 20 291 262 16 60 chr3 199532058 199532241 -27992337 + G-rich Low_complexity Low_complexity 5 179 0 22 0 0 0 chr3 199532927 199532949 -27991629 + AT_rich Low_complexity Low_complexity 1 22 0 24 32 0 0 chr3 199533589 199533620 -27990958 + AT_rich Low_complexity Low_complexity 1 31 0 2176 107 3 0 chr3 199534137 199534428 -27990150 - AluSg SINE Alu -17 293 2 22 35 0 0 chr3 199534799 199534828 -27989750 + AT_rich Low_complexity Low_complexity 1 29 0 1949 157 0 3 chr3 199535468 199535780 -27988798 - AluJb SINE Alu -1 311 1 286 341 106 34 chr3 199535931 199536110 -27988468 + MIR SINE MIR 20 211 -51 418 311 105 18 chr3 199536189 199536417 -27988161 - MIR SINE MIR -1 261 14 705 203 99 0 chr3 199537376 199537568 -27987010 + MER31A LTR ERV1 275 485 0 211 309 49 0 chr3 199537998 199538079 -27986499 - L2 LINE L2 -50 3263 3179 204 299 62 21 chr3 199538093 199538190 -27986388 + MIR SINE MIR 63 163 -99 275 281 44 88 chr3 199538478 199538592 -27985986 - MIR3 SINE MIR -42 166 58 1643 194 36 22 chr3 199538621 199538981 -27985597 + MLT1A1 LTR MaLR 1 365 0 1127 178 206 7 chr3 199538985 199539266 -27985312 + LTR47A LTR ERVL 2 338 -114 245 200 0 0 chr3 199539380 199539415 -27985163 + G-rich Low_complexity Low_complexity 1 35 0 217 175 38 25 chr3 199539428 199539534 -27985044 + T-rich Low_complexity Low_complexity 1 107 0 200 240 0 20 chr3 199540785 199540835 -27983743 - L2 LINE L2 -4 3268 3220 229 333 89 22 chr3 199543410 199543500 -27981078 - MIR SINE MIR -147 115 20 22 0 0 0 chr3 199544402 199544424 -27980154 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 199544669 199544691 -27979887 + AT_rich Low_complexity Low_complexity 1 22 0 201 154 0 0 chr3 199545011 199545050 -27979528 + T-rich Low_complexity Low_complexity 1 39 0 26 0 0 0 chr3 199547453 199547479 -27977099 + AT_rich Low_complexity Low_complexity 1 26 0 3774 174 77 11 chr3 199551555 199552395 -27972183 - MER4D LTR ERV1 0 866 1 240 303 83 9 chr3 199552563 199552672 -27971906 - L2 LINE L2 -6 3307 3191 437 312 127 0 chr3 199552996 199553153 -27971425 + L2 LINE L2 3095 3271 -1 21 0 0 0 chr3 199553727 199553748 -27970830 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 199554527 199554556 -27970022 + AT_rich Low_complexity Low_complexity 1 29 0 194 328 0 0 chr3 199554786 199554850 -27969728 + L2 LINE L2 3249 3312 -1 432 297 83 28 chr3 199554947 199555092 -27969486 + MIR SINE MIR 109 261 -1 462 224 231 20 chr3 199555570 199555717 -27968861 + MER5B DNA MER1_type 1 178 0 588 280 157 34 chr3 199555872 199556197 -27968381 + MLT1L LTR MaLR 138 502 -113 3882 44 38 2 chr3 199557252 199557747 -27966831 - LTR10D LTR ERV1 0 513 1 1733 122 156 19 chr3 199559783 199560103 -27964475 + THE1B LTR MaLR 1 364 0 10609 108 26 12 chr3 199560103 199561662 -27962916 + THE1B-int LTR MaLR 1 1580 0 1944 145 78 15 chr3 199561662 199561994 -27962584 + THE1B LTR MaLR 1 353 -11 1661 164 16 0 chr3 199561999 199562255 -27962323 - AluSx SINE Alu -50 262 3 22 0 0 0 chr3 199562267 199562289 -27962289 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 199562495 199562516 -27962062 + AT_rich Low_complexity Low_complexity 1 21 0 910 237 11 0 chr3 199562516 199562702 -27961876 - MER58A DNA MER1_type -34 190 3 2065 140 7 3 chr3 199563066 199563359 -27961219 - AluSp SINE Alu -11 302 9 324 270 100 37 chr3 199563496 199563785 -27960793 + L1M4 LINE L1 3431 3738 -2408 785 232 28 17 chr3 199563803 199563980 -27960598 - AluSg/x SINE Alu 0 312 134 441 300 118 20 chr3 199564028 199564428 -27960150 + L1M4 LINE L1 3935 4373 -1773 879 216 59 10 chr3 199564535 199564739 -27959839 - MIR SINE MIR -34 228 15 360 197 66 0 chr3 199564866 199564942 -27959636 + MER63A DNA MER1_type 1 81 0 1787 173 3 13 chr3 199564942 199565249 -27959329 - AluJb SINE Alu 0 312 9 22 35 0 0 chr3 199565378 199565407 -27959171 + AT_rich Low_complexity Low_complexity 1 29 0 2178 114 0 23 chr3 199565419 199565725 -27958853 + AluSx SINE Alu 3 301 -11 342 0 0 0 chr3 199565948 199565986 -27958592 + (TA)n Simple_repeat Simple_repeat 2 39 0 1696 178 7 0 chr3 199565987 199566268 -27958310 - AluJo SINE Alu -19 293 11 279 200 280 20 chr3 199566323 199566423 -27958155 - L2 LINE L2 0 3313 3188 401 175 113 0 chr3 199566552 199566632 -27957946 - MSTB2 LTR MaLR -368 89 1 443 286 51 0 chr3 199566632 199566730 -27957848 + MER63A DNA MER1_type 97 199 -11 1549 229 82 8 chr3 199567375 199567850 -27956728 - L1ME2 LINE L1 -104 6060 5551 30 0 0 0 chr3 199567852 199567882 -27956696 + AT_rich Low_complexity Low_complexity 1 30 0 274 333 0 0 chr3 199568514 199568586 -27955992 - L2 LINE L2 0 3313 3242 1984 130 7 0 chr3 199568609 199568894 -27955684 - AluSp SINE Alu -26 287 1 180 320 0 0 chr3 199568894 199568944 -27955634 - L2 LINE L2 -62 3210 3161 1289 306 65 31 chr3 199570238 199571480 -27953098 + L1ME2 LINE L1 381 1719 -4542 2041 248 55 20 chr3 199571666 199572437 -27952141 + L1ME2 LINE L1 5234 6071 -27 1718 212 77 19 chr3 199573140 199573800 -27950778 - L1ME1 LINE L1 -5 6161 5425 539 287 64 13 chr3 199574414 199574718 -27949860 + MLT1I LTR MaLR 33 409 0 226 306 35 56 chr3 199574880 199575024 -27949554 - L2 LINE L2 -1382 1932 1792 2130 124 0 13 chr3 199575323 199575622 -27948956 - AluSx SINE Alu -17 295 1 203 308 112 0 chr3 199576863 199576970 -27947608 - L2 LINE L2 -1217 2097 1979 221 265 84 24 chr3 199577916 199577999 -27946579 + MER5B DNA MER1_type 91 178 0 970 290 0 20 chr3 199578559 199578811 -27945767 + MIR SINE MIR 15 261 -1 25 0 0 0 chr3 199579031 199579056 -27945522 + AT_rich Low_complexity Low_complexity 1 25 0 2013 192 128 5 chr3 199579142 199579549 -27945029 - LTR32 LTR ERVL 0 471 15 3760 55 0 0 chr3 199579572 199580041 -27944537 - L1PA5 LINE L1 0 6154 5686 15656 100 11 4 chr3 199580041 199582240 -27942338 - L1P LINE L1 -3923 2223 11 21 0 0 0 chr3 199583225 199583246 -27941332 + AT_rich Low_complexity Low_complexity 1 21 0 397 274 16 102 chr3 199583423 199583609 -27940969 + MIR SINE MIR 90 259 -3 21 0 0 0 chr3 199584157 199584178 -27940400 + AT_rich Low_complexity Low_complexity 1 21 0 242 191 29 38 chr3 199584560 199584665 -27939913 + (TTTG)n Simple_repeat Simple_repeat 1 104 0 23 0 0 0 chr3 199584965 199584988 -27939590 + AT_rich Low_complexity Low_complexity 1 23 0 884 40 0 135 chr3 199585009 199585157 -27939421 - L1PA3 LINE L1 -3 6152 6025 281 186 14 0 chr3 199585674 199585744 -27938834 + GA-rich Low_complexity Low_complexity 1 71 0 695 304 47 24 chr3 199586055 199586308 -27938270 - MIR SINE MIR -2 260 2 205 335 168 19 chr3 199587008 199587163 -27937415 + MIR SINE MIR 8 185 -77 289 414 48 0 chr3 199587405 199587550 -27937028 - MER5B DNA MER1_type -2 176 25 583 241 96 21 chr3 199587782 199587969 -27936609 + MER63A DNA MER1_type 6 206 -4 295 238 24 12 chr3 199587983 199588067 -27936511 + CT-rich Low_complexity Low_complexity 2 86 0 2133 88 11 3 chr3 199588485 199588823 -27935755 + AluSp SINE Alu 1 340 0 791 216 96 0 chr3 199589201 199589368 -27935210 - MER5A DNA MER1_type 0 189 7 186 321 101 48 chr3 199589439 199589607 -27934971 + L2 LINE L2 2154 2330 -984 232 378 0 0 chr3 199589615 199589689 -27934889 - MIR SINE MIR -177 85 12 2616 206 50 11 chr3 199589765 199590305 -27934273 - MER68 LTR ERV1 0 562 2 1014 96 23 34 chr3 199593301 199593329 -27931249 - L1MA3 LINE L1 0 7724 7697 2005 154 144 5 chr3 199593329 199593705 -27930873 - MSTA LTR MaLR 0 428 1 1014 96 23 34 chr3 199593705 199593853 -27930725 - L1MA3 LINE L1 -27 7697 7550 13842 181 35 20 chr3 199593853 199597513 -27927065 - L1MA3 LINE L1 -608 7116 3396 1978 136 54 0 chr3 199597513 199597808 -27926770 - AluSx SINE Alu -1 311 1 13842 181 35 20 chr3 199597808 199597930 -27926648 - L1MA3 LINE L1 -4328 3396 3277 44163 40 2 2 chr3 199597931 199604082 -27920496 + L1PA3 LINE L1 1 6152 -3 1156 166 45 0 chr3 199604085 199604332 -27920246 - L1MA3 LINE L1 -4264 3301 3044 2167 112 3 19 chr3 199604337 199604651 -27919927 - AluSg SINE Alu -1 309 1 2088 142 3 3 chr3 199604914 199605223 -27919355 + AluSx SINE Alu 1 309 -3 780 213 68 36 chr3 199605360 199605581 -27918997 - MIR SINE MIR 0 262 35 281 351 86 13 chr3 199605853 199606004 -27918574 + MIR SINE MIR 27 188 -74 2256 152 80 10 chr3 199606263 199606652 -27917926 + MSTB LTR MaLR 11 426 0 1385 183 28 0 chr3 199606721 199606972 -27917606 - Tigger3(Golem) DNA MER2_type -1 3028 2771 624 188 0 110 chr3 199606969 199607050 -27917528 - Tigger3(Golem) DNA MER2_type -1089 142 84 * 1168 190 81 63 chr3 199607050 199607334 -27917244 + AluJb SINE Alu 1 289 -13 624 188 0 110 chr3 199607334 199607406 -27917172 - Tigger3(Golem) DNA MER2_type -1147 84 6 1602 181 39 93 chr3 199608701 199608926 -27915652 - MLT1A1 LTR MaLR 0 365 129 2555 42 3 6 chr3 199608926 199609238 -27915340 - AluY SINE Alu 0 311 1 1224 192 124 11 chr3 199609238 199609504 -27915074 - AluJo SINE Alu -6 296 1 1602 181 39 93 chr3 199609504 199609663 -27914915 - MLT1A1 LTR MaLR -234 131 1 1134 141 0 0 chr3 199609776 199609946 -27914632 - FRAM SINE Alu -14 162 1 4484 170 73 19 chr3 199609958 199610289 -27914289 - L1PB4 LINE L1 -14 6142 5830 1889 109 0 22 chr3 199610289 199610565 -27914013 - AluSx SINE Alu 0 312 43 4484 170 73 19 chr3 199610565 199611966 -27912612 - L1PB4 LINE L1 -326 5830 4355 977 184 13 26 chr3 199611947 199612175 -27912403 - L1PB4 LINE L1 -2057 4089 3865 * 2069 126 3 13 chr3 199612260 199612569 -27912009 + AluSp SINE Alu 1 306 -7 454 341 115 25 chr3 199613155 199613464 -27911114 - L2 LINE L2 -335 2937 2596 631 246 64 54 chr3 199613631 199613834 -27910744 + Charlie8 DNA MER1_type 57 261 -2156 240 254 0 0 chr3 199613903 199613958 -27910620 + Charlie8 DNA MER1_type 1369 1423 -994 24 32 0 0 chr3 199614822 199614853 -27909725 + AT_rich Low_complexity Low_complexity 1 31 0 22 88 0 0 chr3 199614884 199614941 -27909637 + AT_rich Low_complexity Low_complexity 1 57 0 193 316 234 6 chr3 199616435 199616593 -27907985 - MIR SINE MIR -21 241 48 21 36 0 0 chr3 199617167 199617195 -27907383 + AT_rich Low_complexity Low_complexity 1 28 0 23 33 0 0 chr3 199617645 199617675 -27906903 + AT_rich Low_complexity Low_complexity 1 30 0 27 81 0 0 chr3 199618448 199618510 -27906068 + AT_rich Low_complexity Low_complexity 1 62 0 2034 115 0 42 chr3 199618618 199618931 -27905647 + AluSg SINE Alu 1 300 -10 742 315 84 29 chr3 199618994 199619540 -27905038 + L1ME1 LINE L1 263 838 -5769 372 281 106 33 chr3 199619525 199619782 -27904796 + L1ME1 LINE L1 1484 1952 -4655 * 4337 250 85 22 chr3 199619870 199621997 -27902581 + L1ME1 LINE L1 2062 4288 -2138 674 203 73 31 chr3 199621997 199622166 -27902412 + MLT1B LTR MaLR 1 161 -220 2134 88 0 79 chr3 199622166 199622494 -27902084 + AluSc SINE Alu 1 302 -7 674 203 73 31 chr3 199622494 199622534 -27902044 + MLT1B LTR MaLR 161 198 -183 328 256 0 0 chr3 199622535 199622613 -27901965 + MLT1B LTR MaLR 311 388 -2 941 209 35 78 chr3 199622615 199622988 -27901590 + L1ME1 LINE L1 4284 4640 -1786 576 192 40 8 chr3 199623001 199623126 -27901452 - AluJb SINE Alu -183 129 1 774 235 39 28 chr3 199623149 199623434 -27901144 + L1ME1 LINE L1 4661 4948 -1478 2263 207 67 43 chr3 199623434 199623481 -27901097 + L1ME1 LINE L1 5679 5723 -723 2392 71 0 0 chr3 199623481 199623777 -27900801 + AluY SINE Alu 3 298 -13 2263 207 67 43 chr3 199623777 199624382 -27900196 + L1ME1 LINE L1 5723 6347 -99 21 57 0 0 chr3 199624780 199624815 -27899763 + AT_rich Low_complexity Low_complexity 1 35 0 22 0 0 0 chr3 199624888 199624910 -27899668 + AT_rich Low_complexity Low_complexity 1 22 0 269 208 137 55 chr3 199624954 199625137 -27899441 + L1ME4a LINE L1 5255 5452 -2356 290 239 244 5 chr3 199625149 199625358 -27899220 + L1ME4a LINE L1 5499 5757 -364 2101 132 0 0 chr3 199625413 199625708 -27898870 + AluSx SINE Alu 3 297 -15 242 271 0 0 chr3 199625853 199625912 -27898666 + (CA)n Simple_repeat Simple_repeat 2 60 0 282 271 56 9 chr3 199625916 199626023 -27898555 + L1ME4a LINE L1 5974 6085 -36 43091 44 4 2 chr3 199627145 199633272 -27891306 + L1PA3 LINE L1 11 6152 -3 16591 175 58 14 chr3 199633275 199633527 -27891051 - L1M1 LINE L1 -4264 3301 3061 2101 116 3 19 chr3 199633527 199633838 -27890740 - AluSg SINE Alu -1 309 4 16591 175 58 14 chr3 199633838 199636733 -27887845 - L1M1 LINE L1 -4504 3061 18 207 200 25 12 chr3 199637607 199637687 -27886891 + CT-rich Low_complexity Low_complexity 2 82 0 604 336 46 8 chr3 199639856 199640094 -27884484 + L3b LINE CR1 1256 1502 -81 464 294 41 20 chr3 199641798 199641944 -27882634 - MIR SINE MIR 0 262 114 373 309 55 0 chr3 199642088 199642198 -27882380 - L2 LINE L2 -2 3270 3155 388 330 70 0 chr3 199642240 199642355 -27882223 + MER119 DNA MER1_type 11 133 -450 * 655 214 41 77 chr3 199642353 199642549 -27882029 + MER119 DNA MER1_type 395 583 0 247 296 87 35 chr3 199643873 199643988 -27880590 - MLT1J LTR MaLR -165 346 226 1267 166 53 8 chr3 199644392 199644639 -27879939 - Tigger2 DNA MER2_type 0 2718 2461 2233 61 0 17 chr3 199644699 199644994 -27879584 + AluY SINE Alu 1 290 -21 3019 117 80 83 chr3 199645020 199645655 -27878923 - Tigger2 DNA MER2_type -2084 634 2 2274 101 0 0 chr3 199646284 199646581 -27877997 + AluSx SINE Alu 1 297 -15 1912 163 3 0 chr3 199647004 199647310 -27877268 - AluJb SINE Alu -5 307 1 32 0 0 0 chr3 199647512 199647544 -27877034 + AT_rich Low_complexity Low_complexity 1 32 0 540 251 155 44 chr3 199647544 199647951 -27876627 + L1ME4a LINE L1 5648 6099 -22 342 273 137 31 chr3 199648120 199648459 -27876119 - L1ME LINE L1 -461 5660 5270 25 65 0 0 chr3 199648634 199648680 -27875898 + AT_rich Low_complexity Low_complexity 1 46 0 4279 159 20 16 chr3 199649251 199650050 -27874528 + L1PB4 LINE L1 5353 6154 -2 2234 96 7 3 chr3 199650148 199650450 -27874128 + AluSg SINE Alu 1 303 -7 292 356 0 0 chr3 199650450 199650537 -27874041 - MIR3 SINE MIR -44 164 78 23 78 0 0 chr3 199652090 199652141 -27872437 + AT_rich Low_complexity Low_complexity 1 51 0 346 243 90 18 chr3 199653778 199653889 -27870689 + 7SK RNA RNA 1 119 -74 500 303 39 81 chr3 199654206 199654566 -27870012 - L2 LINE L2 -3 3310 2966 2281 107 0 3 chr3 199654608 199654918 -27869660 + AluSc SINE Alu 1 309 0 405 321 74 25 chr3 199655828 199655990 -27868588 + MIR SINE MIR 20 189 -73 23 0 0 0 chr3 199657386 199657409 -27867169 + AT_rich Low_complexity Low_complexity 1 23 0 2157 119 0 0 chr3 199657461 199657754 -27866824 - AluSx SINE Alu -17 295 3 6070 152 11 15 chr3 199658054 199659431 -27865147 + L1MA4A LINE L1 4899 6301 -2 287 211 211 49 chr3 199659496 199659761 -27864817 + L1ME4a LINE L1 5657 5964 -157 24 0 0 0 chr3 199660066 199660090 -27864488 + AT_rich Low_complexity Low_complexity 1 24 0 189 307 118 39 chr3 199660363 199660490 -27864088 - L2 LINE L2 -194 3078 2942 473 230 42 98 chr3 199661316 199661546 -27863032 - MER63 DNA MER1_type 0 1688 1 695 230 141 3 chr3 199661625 199661908 -27862670 - Charlie2 DNA MER1_type 0 2862 2541 215 195 0 0 chr3 199662094 199662135 -27862443 + MER5B DNA MER1_type 1 41 -137 552 209 348 7 chr3 199663009 199663311 -27861267 + MLT1E1 LTR MaLR 185 589 -65 * 599 201 79 7 chr3 199663306 199663445 -27861133 - MER68 LTR ERV1 -18 544 396 1820 156 0 10 chr3 199663716 199664005 -27860573 - AluJb SINE Alu -18 294 9 1932 105 49 3 chr3 199664267 199664553 -27860025 - AluSg SINE Alu -11 299 1 2335 106 0 0 chr3 199664843 199665154 -27859424 - AluSx SINE Alu -1 311 1 295 238 24 12 chr3 199665574 199665658 -27858920 + GA-rich Low_complexity Low_complexity 2 86 0 522 251 94 21 chr3 199665672 199665863 -27858715 - MER63A DNA MER1_type -4 206 2 301 311 40 40 chr3 199666064 199666215 -27858363 - L1M2 LINE L1 -5539 1310 1160 456 310 28 0 chr3 199666676 199666821 -27857757 - MER20B DNA MER1_type -607 176 28 215 272 99 25 chr3 199667859 199667940 -27856638 + MER5B DNA MER1_type 92 178 0 970 290 0 20 chr3 199668500 199668752 -27855826 + MIR SINE MIR 15 261 -1 608 188 17 0 chr3 199669163 199669280 -27855298 + MLT1E3 LTR MaLR 78 196 -428 2303 96 3 6 chr3 199669293 199669605 -27854973 - AluY SINE Alu 0 311 1 21 0 0 0 chr3 199669714 199669735 -27854843 + AT_rich Low_complexity Low_complexity 1 21 0 3481 68 0 4 chr3 199669735 199670191 -27854387 - L1PA5 LINE L1 -15 6139 5686 919 132 13 0 chr3 199670191 199670343 -27854235 - L1P LINE L1 -3923 2223 2070 539 287 64 13 chr3 199670682 199670986 -27853592 + MLT1I LTR MaLR 33 409 0 661 170 0 0 chr3 199671828 199671940 -27852638 + AluSg/x SINE Alu 192 303 -7 1698 178 7 0 chr3 199672178 199672459 -27852119 - AluJo SINE Alu -19 293 11 323 200 270 10 chr3 199672514 199672614 -27851964 - L2 LINE L2 0 3313 3188 2166 107 0 7 chr3 199672759 199673048 -27851530 + AluSg SINE Alu 1 287 -23 1601 158 40 52 chr3 199673618 199673946 -27850632 - Tigger2a DNA MER2_type -100 334 11 300 119 0 0 chr3 199673951 199673993 -27850585 - Tigger2a DNA MER2_type -392 42 1 371 333 21 21 chr3 199676538 199676682 -27847896 - MIR SINE MIR -70 192 49 494 283 68 42 chr3 199676706 199677013 -27847565 - MER102b DNA MER1_type 0 341 27 904 122 83 0 chr3 199677432 199677588 -27846990 + MER44D DNA MER2_type 27 465 -144 1088 91 0 26 chr3 199677588 199677742 -27846836 + AluSp/q SINE Alu 159 308 -5 22 0 0 0 chr3 199678194 199678216 -27846362 + AT_rich Low_complexity Low_complexity 1 22 0 1977 115 29 29 chr3 199678340 199678653 -27845925 - AluSq SINE Alu 0 313 1 361 282 13 32 chr3 199679705 199679861 -27844717 - MER103 DNA DNA -7 159 7 210 342 26 60 chr3 199680975 199681092 -27843486 - MIR SINE MIR -77 131 19 468 246 7 20 chr3 199681220 199681394 -27843184 - L1ME3A LINE L1 -5 6165 5992 979 257 54 4 chr3 199681395 199681656 -27842922 - LTR16B LTR ERVL -162 302 29 1464 242 130 13 chr3 199681674 199681747 -27842831 + L1ME3A LINE L1 5050 5113 -1057 2612 105 8 0 chr3 199681747 199682108 -27842470 - THE1B LTR MaLR 0 364 1 1464 242 130 13 chr3 199682108 199682734 -27841844 + L1ME3A LINE L1 5113 5825 -345 315 0 0 0 chr3 199683451 199683486 -27841092 + (TG)n Simple_repeat Simple_repeat 2 36 0 269 214 14 43 chr3 199684044 199684114 -27840464 + MARNA DNA Mariner 149 216 -370 2282 82 0 3 chr3 199684126 199684420 -27840158 - AluY SINE Alu -18 293 1 26 64 0 0 chr3 199684471 199684518 -27840060 + AT_rich Low_complexity Low_complexity 1 47 0 26 30 0 0 chr3 199685035 199685068 -27839510 + AT_rich Low_complexity Low_complexity 1 33 0 1979 253 102 17 chr3 199685192 199685881 -27838697 + HsTC2 DNA Tc2 1 747 -1151 468 192 24 7 chr3 199685876 199685981 -27838597 + HsTC2 DNA Tc2 1274 1553 -345 * 379 229 17 117 chr3 199686165 199686344 -27838234 - L1MC5 LINE L1 -67 7894 7734 219 266 0 0 chr3 199686359 199686423 -27838155 + CT-rich Low_complexity Low_complexity 2 65 0 699 204 92 0 chr3 199686423 199686575 -27838003 - AluJ SINE Alu 0 302 137 247 88 53 53 chr3 199686578 199686635 -27837943 - AluJ SINE Alu -168 134 78 1125 146 0 63 chr3 199686635 199686841 -27837737 - AluSq SINE Alu -120 193 1 5202 166 49 20 chr3 199686850 199687920 -27836658 - L1MC1 LINE L1 0 6333 5232 803 215 126 9 chr3 199687920 199688245 -27836333 + HsTC2 DNA Tc2 1533 1895 -3 649 332 48 14 chr3 199688906 199689195 -27835383 + LTR33 LTR ERVL 1 299 -222 965 176 64 0 chr3 199690975 199691163 -27833415 - L1PB4 LINE L1 -7 6149 5950 635 189 17 53 chr3 199691179 199691356 -27833222 + L1PB4 LINE L1 5767 5935 -234 203 339 40 0 chr3 199691441 199691565 -27833013 + MIR SINE MIR 117 245 -17 277 337 50 0 chr3 199692165 199692266 -27832312 + MER91C DNA MER1_type 14 119 -21 25 0 0 0 chr3 199692531 199692556 -27832022 + AT_rich Low_complexity Low_complexity 1 25 0 2078 186 44 7 chr3 199692713 199693126 -27831452 - MSTB1 LTR MaLR 0 432 5 2351 100 0 3 chr3 199693164 199693474 -27831104 - AluSx SINE Alu -3 309 1 187 302 23 35 chr3 199694672 199694758 -27829820 + MIR SINE MIR 16 100 -108 204 267 254 24 chr3 199694826 199694991 -27829587 - MIR SINE MIR -13 249 47 2028 193 67 5 chr3 199695064 199695500 -27829078 - MLT1C LTR MaLR 0 467 5 24 53 0 0 chr3 199695818 199695856 -27828722 + AT_rich Low_complexity Low_complexity 1 38 0 2956 162 41 0 chr3 199696061 199696603 -27827975 - L1MB2 LINE L1 -1 6170 5607 1735 178 72 54 chr3 199696603 199697008 -27827570 - LTR36 LTR ERV1 -1 610 199 * 1806 107 7 74 chr3 199696988 199697298 -27827280 - LTR36 LTR ERV1 -322 289 1 4011 251 57 10 chr3 199697298 199697810 -27826768 - L1MB2 LINE L1 -572 5611 5125 7447 29 19 0 chr3 199697810 199698768 -27825810 - L1PA4 LINE L1 -6 6149 5188 4011 251 57 10 chr3 199698768 199699686 -27824892 - L1MB2 LINE L1 -1058 5125 4085 2496 142 34 7 chr3 199700175 199700590 -27823988 + MSTA LTR MaLR 3 428 0 238 314 64 43 chr3 199700603 199700743 -27823835 - L3 LINE CR1 -115 1462 1320 190 372 21 21 chr3 199700762 199700856 -27823722 - L2 LINE L2 -21 3292 3199 330 302 184 19 chr3 199701098 199701310 -27823268 + MIR SINE MIR 13 259 -3 441 54 0 0 chr3 199701311 199701367 -27823211 + (ATG)n Simple_repeat Simple_repeat 1 56 0 965 321 35 49 chr3 199701770 199702421 -27822157 - L2 LINE L2 -7 3306 2656 183 333 0 15 chr3 199702556 199702622 -27821956 - L2 LINE L2 -8 3305 3241 2894 146 42 6 chr3 199702815 199703336 -27821242 + L1MA4A LINE L1 5762 6301 -2 2175 179 54 2 chr3 199703344 199703751 -27820827 - MSTA LTR MaLR 0 428 1 475 273 83 30 chr3 199706628 199706877 -27817701 - L1ME3A LINE L1 -219 5934 5669 2967 201 32 25 chr3 199706877 199707525 -27817053 + MER82 DNA MER2_type 1 653 0 475 273 83 30 chr3 199707525 199707539 -27817039 - L1ME3A LINE L1 -484 5669 5657 600 204 109 7 chr3 199707556 199707703 -27816875 - MER5A DNA MER1_type -22 167 6 409 287 95 25 chr3 199707776 199708058 -27816520 - L1ME3A LINE L1 -527 5618 5300 464 313 67 25 chr3 199708421 199708869 -27815709 - L1ME3A LINE L1 -4862 1257 791 238 171 0 0 chr3 199708886 199708927 -27815651 + Charlie5 DNA MER1_type 2544 2584 -28 597 179 17 8 chr3 199708929 199709046 -27815532 - MER52A LTR ERV1 0 1755 1638 41 48 0 0 chr3 199709136 199709198 -27815380 + AT_rich Low_complexity Low_complexity 1 62 0 13710 156 39 49 chr3 199710143 199712721 -27811857 + L1M1 LINE L1 12 2563 -5002 203 111 0 89 chr3 199712945 199712990 -27811588 + (TAGA)n Simple_repeat Simple_repeat 4 44 0 288 0 0 0 chr3 199713013 199713045 -27811533 + (TG)n Simple_repeat Simple_repeat 2 33 0 23 54 0 0 chr3 199713319 199713356 -27811222 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr3 199713525 199713553 -27811025 + AT_rich Low_complexity Low_complexity 1 28 0 1218 313 132 10 chr3 199714303 199714895 -27809683 + L2 LINE L2 2041 2704 -610 4917 99 19 50 chr3 199715037 199715843 -27808735 - L1PA12 LINE L1 -8 6160 5380 2384 167 15 18 chr3 199715877 199716333 -27808245 + L1P LINE L1 4708 5162 -984 514 303 72 41 chr3 199716349 199716786 -27807792 + L2 LINE L2 2708 3172 -141 264 89 22 22 chr3 199716901 199716946 -27807632 + MER63 DNA MER1_type 1 45 -885 765 158 24 101 chr3 199716966 199717062 -27807516 + MER63 DNA MER1_type 866 939 -122 2173 150 31 3 chr3 199717062 199717416 -27807162 + THE1B LTR MaLR 1 364 0 765 158 24 101 chr3 199717416 199717528 -27807050 + MER63 DNA MER1_type 939 1058 -3 528 320 67 5 chr3 199717528 199717722 -27806856 + MIR SINE MIR 57 262 0 30 0 0 0 chr3 199717745 199717775 -27806803 + AT_rich Low_complexity Low_complexity 1 30 0 400 200 25 0 chr3 199717829 199717909 -27806669 + MIR SINE MIR 157 238 -24 206 339 39 39 chr3 199718219 199718346 -27806232 + MIR SINE MIR 13 139 -123 366 269 0 0 chr3 199718862 199718940 -27805638 + MER5A DNA MER1_type 14 91 -98 182 273 0 0 chr3 199719084 199719128 -27805450 + L2 LINE L2 3262 3305 -8 5541 146 18 14 chr3 199720361 199720490 -27804088 - Tigger1 DNA MER2_type -76 2342 2215 2187 110 0 22 chr3 199720490 199720808 -27803770 + AluSx SINE Alu 1 311 -1 5541 146 18 14 chr3 199720808 199721613 -27802965 - Tigger1 DNA MER2_type -203 2215 1404 302 241 115 0 chr3 199721613 199721700 -27802878 - L1M4 LINE L1 -1413 5544 5448 740 247 76 18 chr3 199721707 199721930 -27802648 - L1M4 LINE L1 -6612 247 12 348 269 0 0 chr3 199721942 199722020 -27802558 + MER119 DNA MER1_type 505 582 -1 180 288 151 0 chr3 199724501 199724574 -27800004 - L2 LINE L2 -4 3268 3185 469 310 28 0 chr3 199725229 199725374 -27799204 + MER20B DNA MER1_type 28 176 -607 229 231 56 120 chr3 199725409 199725517 -27799061 + MLT1L LTR MaLR 144 244 -371 216 0 0 0 chr3 199725954 199725978 -27798600 + (A)n Simple_repeat Simple_repeat 1 24 0 24 32 0 0 chr3 199726361 199726392 -27798186 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3 199727067 199727095 -27797483 + AT_rich Low_complexity Low_complexity 1 28 0 2140 104 0 3 chr3 199727170 199727457 -27797121 + AluSc SINE Alu 1 286 -23 496 301 33 19 chr3 199727596 199727829 -27796749 - L1MEc LINE L1 -831 1745 1516 2679 20 0 0 chr3 199727943 199728244 -27796334 + AluYa5 SINE Alu 1 301 -10 231 250 0 0 chr3 199728275 199728343 -27796235 + (TA)n Simple_repeat Simple_repeat 2 69 0 310 271 84 31 chr3 199728344 199728569 -27796009 - L1MEc LINE L1 -4906 1299 1063 2031 115 20 7 chr3 199728576 199728871 -27795707 + AluSq SINE Alu 1 299 -14 547 294 110 42 chr3 199729939 199730476 -27794102 - L2 LINE L2 -11 3302 2722 51 96 0 0 chr3 199730479 199730635 -27793943 + AT_rich Low_complexity Low_complexity 1 156 0 2899 230 68 21 chr3 199730809 199731622 -27792956 - L1ME1 LINE L1 -4 6162 5312 1910 149 45 15 chr3 199731856 199732192 -27792386 - MER7A DNA MER2_type -2 344 1 1123 193 10 0 chr3 199732513 199732710 -27791868 - AluJb SINE Alu -24 288 90 223 115 48 96 chr3 199733775 199733879 -27790699 + (TTTAA)n Simple_repeat Simple_repeat 3 101 0 3342 169 42 2 chr3 199734146 199734725 -27789853 - MER6A DNA MER2_type 0 605 4 2652 20 3 0 chr3 199734864 199735163 -27789415 + AluY SINE Alu 1 300 -11 255 313 48 12 chr3 199735231 199735314 -27789264 - MIR SINE MIR -102 106 21 1457 236 27 11 chr3 199735508 199735873 -27788705 + L1M4 LINE L1 4830 5200 -946 3371 45 2 0 chr3 199735873 199736293 -27788285 - L1PA5 LINE L1 -867 5279 4859 7005 43 6 2 chr3 199736293 199737166 -27787412 + L1PA5 LINE L1 5273 6150 -4 1903 203 54 92 chr3 199739569 199740010 -27784568 - MLT1E3 LTR MaLR 0 624 214 2194 109 3 0 chr3 199740010 199740321 -27784257 + AluSx SINE Alu 1 312 0 1903 203 54 92 chr3 199740321 199740528 -27784050 - MLT1E3 LTR MaLR -410 214 1 1770 117 42 4 chr3 199742061 199742326 -27782252 - AluSg SINE Alu -35 275 1 2343 94 3 0 chr3 199742616 199742924 -27781654 - AluY SINE Alu -2 309 1 12283 35 5 0 chr3 199743044 199745300 -27779278 - L1PA4 LINE L1 -1 6154 3889 21 0 0 0 chr3 199746746 199746767 -27777811 + AT_rich Low_complexity Low_complexity 1 21 0 205 211 19 19 chr3 199746951 199747003 -27777575 + (CATA)n Simple_repeat Simple_repeat 3 54 0 1623 118 67 12 chr3 199748082 199748336 -27776242 + AluSq SINE Alu 1 268 -45 204 111 0 0 chr3 199748350 199748386 -27776192 + (CAAA)n Simple_repeat Simple_repeat 1 36 0 343 267 130 27 chr3 199748638 199748784 -27775794 - MIR3 SINE MIR -5 203 43 393 297 55 7 chr3 199748827 199748972 -27775606 - MIR SINE MIR -91 171 20 26 74 0 0 chr3 199749369 199749423 -27775155 + AT_rich Low_complexity Low_complexity 1 54 0 2066 100 0 27 chr3 199750036 199750336 -27774242 - AluSc SINE Alu -13 296 5 431 301 133 12 chr3 199751888 199752144 -27772434 - LTR40b LTR ERVL -38 424 138 2051 122 0 3 chr3 199752666 199752954 -27771624 + AluSg SINE Alu 1 287 -23 186 360 27 0 chr3 199753413 199753488 -27771090 + MIR SINE MIR 64 140 -68 2410 77 0 3 chr3 199753719 199754029 -27770549 + AluY SINE Alu 1 309 -2 229 276 86 69 chr3 199755108 199755282 -27769296 - MER5B DNA MER1_type -1 177 1 231 248 146 51 chr3 199755135 199755272 -27769306 + MER5A DNA MER1_type 40 189 0 296 333 14 28 chr3 199756234 199756378 -27768200 + L2 LINE L2 1799 1940 -1374 673 226 11 17 chr3 199756648 199756825 -27767753 - MER96B DNA MER1_type? -241 176 1 210 407 50 14 chr3 199757057 199757197 -27767381 + L2 LINE L2 2557 2701 -613 255 390 51 0 chr3 199757220 199757338 -27767240 - L2 LINE L2 0 3313 3190 24 0 0 0 chr3 199757377 199757401 -27767177 + AT_rich Low_complexity Low_complexity 1 24 0 3700 162 20 4 chr3 199757808 199758501 -27766077 - L1MC1 LINE L1 -11 6322 5619 384 290 0 0 chr3 199758728 199758828 -27765750 - MIR SINE MIR -138 124 25 420 301 52 35 chr3 199758829 199759002 -27765576 - MIR SINE MIR -50 212 37 787 246 49 20 chr3 199759492 199759695 -27764883 - MIR SINE MIR -15 247 39 798 247 16 0 chr3 199761846 199762032 -27762546 - MER5A DNA MER1_type 0 189 1 989 217 79 0 chr3 199762127 199762330 -27762248 - MER58A DNA MER1_type -5 219 1 241 299 196 0 chr3 199762727 199762824 -27761754 - L2 LINE L2 -2 3270 3155 2508 163 22 7 chr3 199763864 199764318 -27760260 - LOR1b LTR ERV1 0 461 1 701 191 74 11 chr3 199764604 199764871 -27759707 - MLT1A2 LTR MaLR -13 361 1 451 321 60 0 chr3 199765514 199765682 -27758896 - MIR SINE MIR -12 250 73 1216 169 9 24 chr3 199765801 199766014 -27758564 - AluJb SINE Alu -9 303 94 6864 176 63 12 chr3 199766015 199767274 -27757304 - MER52A LTR ERV1 -7 1748 425 677 227 20 20 chr3 199767289 199767439 -27757139 - MER52A LTR ERV1 -1605 150 1 632 155 0 10 chr3 199767442 199767545 -27757033 - AluJb SINE Alu -210 102 1 21 0 0 0 chr3 199768200 199768221 -27756357 + AT_rich Low_complexity Low_complexity 1 21 0 190 421 63 8 chr3 199768561 199768687 -27755891 + MIR3 SINE MIR 30 162 -46 180 0 0 0 chr3 199770271 199770291 -27754287 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 23 33 0 0 chr3 199771753 199771783 -27752795 + AT_rich Low_complexity Low_complexity 1 30 0 304 297 47 39 chr3 199772417 199772545 -27752033 - L2 LINE L2 -7 3265 3137 21 36 0 0 chr3 199774048 199774076 -27750502 + AT_rich Low_complexity Low_complexity 1 28 0 1682 196 38 88 chr3 199774318 199774582 -27749996 + MLT1D LTR MaLR 1 226 -279 17786 138 10 3 chr3 199774582 199777658 -27746920 + L1PA10 LINE L1 2382 5493 -675 1691 128 0 0 chr3 199777658 199777892 -27746686 + AluSg/x SINE Alu 77 310 0 17786 138 10 3 chr3 199777892 199778566 -27746012 + L1PA10 LINE L1 5493 6161 -7 1682 196 38 88 chr3 199778566 199778833 -27745745 + MLT1D LTR MaLR 226 505 0 21 36 0 0 chr3 199779134 199779162 -27745416 + AT_rich Low_complexity Low_complexity 1 28 0 273 246 0 0 chr3 199779923 199779980 -27744598 + MER81 DNA DNA 38 94 -20 187 246 46 31 chr3 199780097 199780162 -27744416 + L2 LINE L2 2432 2497 -817 213 39 0 0 chr3 199780643 199780669 -27743909 + (TTC)n Simple_repeat Simple_repeat 2 27 0 1982 136 3 13 chr3 199780671 199780973 -27743605 - AluSg SINE Alu -11 299 1 538 312 112 31 chr3 199780977 199781458 -27743120 - L1M4 LINE L1 -2580 3566 3047 1319 77 60 6 chr3 199781836 199782018 -27742560 - AluSg SINE Alu -118 192 1 2325 97 3 3 chr3 199782308 199782618 -27741960 - AluY SINE Alu -1 310 1 2281 122 36 11 chr3 199782738 199783204 -27741374 - L1PA4 LINE L1 -1 6154 5677 1561 218 36 8 chr3 199783395 199783757 -27740821 - MLT1A2 LTR MaLR 0 374 3 2185 102 7 3 chr3 199784128 199784433 -27740145 + AluY SINE Alu 3 308 -3 30 0 0 0 chr3 199784708 199784738 -27739840 + GC_rich Low_complexity Low_complexity 1 30 0 353 253 34 34 chr3 199784940 199785159 -27739419 + G-rich Low_complexity Low_complexity 1 219 0 983 248 24 13 chr3 199785476 199785774 -27738804 + L1M4 LINE L1 3375 3675 -2471 252 274 0 0 chr3 199786586 199786637 -27737941 + polypyrimidine Low_complexity Low_complexity 3 53 0 586 292 58 22 chr3 199786758 199786984 -27737594 - MIR SINE MIR -27 235 2 2327 100 7 3 chr3 199787244 199787553 -27737025 - AluSx SINE Alu -2 310 1 289 350 38 22 chr3 199787812 199788126 -27736452 - L1M4 LINE L1 -1924 4222 3904 22 56 0 0 chr3 199788151 199788187 -27736391 + AT_rich Low_complexity Low_complexity 1 36 0 2415 84 0 0 chr3 199788200 199788499 -27736079 + AluSx SINE Alu 1 299 -13 232 221 33 90 chr3 199788535 199788657 -27735921 - L1M4 LINE L1 -2328 3818 3704 204 125 0 0 chr3 199788670 199788702 -27735876 + (TG)n Simple_repeat Simple_repeat 1 32 0 538 281 129 74 chr3 199788719 199788788 -27735790 - L1M4 LINE L1 -2519 3627 3563 2428 68 7 3 chr3 199788788 199789095 -27735483 - AluY SINE Alu -3 308 1 538 281 129 74 chr3 199789095 199789580 -27734998 - L1M4 LINE L1 -2583 3563 3047 1407 159 116 7 chr3 199789913 199790189 -27734389 - AluSg SINE Alu -2 308 3 1561 218 36 8 chr3 199790560 199790922 -27733656 + MLT1A2 LTR MaLR 3 374 0 557 191 122 23 chr3 199791283 199791414 -27733164 - FRAM SINE Alu -10 166 23 348 309 110 0 chr3 199791646 199791782 -27732796 - MIR SINE MIR -48 214 64 1874 138 35 43 chr3 199791800 199792176 -27732402 + THE1C LTR MaLR 3 375 0 224 231 43 60 chr3 199793564 199793681 -27730897 + L2 LINE L2 2859 2973 -299 239 0 32 0 chr3 199793763 199793794 -27730784 + (CAAAA)n Simple_repeat Simple_repeat 5 36 0 2116 97 0 45 chr3 199794308 199794619 -27729959 - AluSg SINE Alu -13 297 1 2203 108 7 0 chr3 199796520 199796815 -27727763 - AluSq SINE Alu -16 297 1 21 0 0 0 chr3 199798203 199798224 -27726354 + AT_rich Low_complexity Low_complexity 1 21 0 393 115 0 167 chr3 199798392 199798435 -27726143 + MADE1 DNA Mariner 1 21 -59 2078 52 26 0 chr3 199798435 199798703 -27725875 - L1PA4 LINE L1 -3 6152 5878 393 115 0 167 chr3 199798703 199798755 -27725823 + MADE1 DNA Mariner 21 80 0 2413 67 20 0 chr3 199798972 199799269 -27725309 - AluY SINE Alu -8 303 1 2224 90 21 0 chr3 199799492 199799781 -27724797 - AluY SINE Alu -16 295 1 1644 179 39 18 chr3 199800629 199800964 -27723614 - MER2 DNA MER2_type -2 342 1 486 312 63 23 chr3 199801229 199801450 -27723128 - MIR SINE MIR -2 260 31 2451 70 3 0 chr3 199801457 199801755 -27722823 - AluY SINE Alu -11 300 2 2492 90 0 0 chr3 199802610 199802920 -27721658 + AluSg SINE Alu 1 310 0 191 114 23 0 chr3 199803133 199803177 -27721401 + A-rich Low_complexity Low_complexity 3 47 0 194 306 0 0 chr3 199803264 199803313 -27721265 - MIR SINE MIR -59 149 101 2064 135 30 0 chr3 199803668 199803965 -27720613 + AluSc SINE Alu 2 307 -2 297 89 0 0 chr3 199804430 199804475 -27720103 + (CA)n Simple_repeat Simple_repeat 2 46 0 273 29 0 0 chr3 199804476 199804510 -27720068 + (GA)n Simple_repeat Simple_repeat 1 34 0 538 281 0 8 chr3 199806045 199806173 -27718405 - L2 LINE L2 -2 3311 3185 440 259 37 0 chr3 199806240 199806375 -27718203 - MER91C DNA MER1_type 0 140 1 421 311 105 10 chr3 199807647 199807856 -27716722 + MIR SINE MIR 2 230 -32 27 0 0 0 chr3 199808351 199808378 -27716200 + AT_rich Low_complexity Low_complexity 1 27 0 184 109 22 22 chr3 199808899 199808945 -27715633 + T-rich Low_complexity Low_complexity 6 51 0 31 58 0 0 chr3 199809102 199809154 -27715424 + AT_rich Low_complexity Low_complexity 1 52 0 2259 62 10 30 chr3 199809899 199810204 -27714374 + AluY SINE Alu 11 309 -2 191 366 46 53 chr3 199810541 199810672 -27713906 - L2 LINE L2 -118 3154 3025 237 282 51 39 chr3 199811281 199811359 -27713219 - L2 LINE L2 -36 3277 3199 1658 186 21 21 chr3 199814454 199814835 -27709743 - L1MB8 LINE L1 -3 6175 5795 359 328 160 30 chr3 199814855 199815123 -27709455 - LTR16A LTR ERVL 0 450 148 191 236 55 0 chr3 199817745 199817800 -27706778 - L2 LINE L2 -1 3271 3214 180 0 0 0 chr3 199817803 199817823 -27706755 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 10499 92 7 7 chr3 199817825 199820091 -27704487 - L1PA7 LINE L1 -11 6143 3875 4953 80 1 1 chr3 199820092 199820769 -27703809 - L1PA7 LINE L1 -3978 2168 1492 21 57 0 0 chr3 199821823 199821858 -27702720 + AT_rich Low_complexity Low_complexity 1 35 0 2541 106 16 0 chr3 199821906 199822275 -27702303 - THE1C LTR MaLR 0 375 1 25 0 0 0 chr3 199822942 199822967 -27701611 + AT_rich Low_complexity Low_complexity 1 25 0 304 256 50 58 chr3 199823120 199823241 -27701337 - MER5B DNA MER1_type -55 123 4 358 242 88 0 chr3 199824212 199824303 -27700275 - Tigger7 DNA MER2_type -2385 102 4 23 0 0 0 chr3 199824325 199824348 -27700230 + AT_rich Low_complexity Low_complexity 1 23 0 1083 199 9 0 chr3 199824355 199824576 -27700002 - L1PA16 LINE L1 -9 6157 5935 406 57 0 0 chr3 199824577 199824630 -27699948 - MADE1 DNA Mariner 0 80 28 267 78 59 39 chr3 199824630 199824681 -27699897 - L1PB3 LINE L1 -213 5941 5890 * 1222 213 61 0 chr3 199824673 199824950 -27699628 - L1P LINE L1 -1193 4953 4660 2172 101 7 7 chr3 199825497 199825805 -27698773 + AluY SINE Alu 1 308 -3 200 200 71 0 chr3 199826334 199826404 -27698174 + (TTATA)n Simple_repeat Simple_repeat 3 77 0 405 0 0 0 chr3 199826904 199826949 -27697629 + (TA)n Simple_repeat Simple_repeat 1 45 0 253 163 41 20 chr3 199827201 199827277 -27697301 + AluJ/FRAM SINE Alu 231 307 0 1353 207 69 17 chr3 199827671 199828019 -27696559 - MLT1B LTR MaLR -2 388 23 285 236 100 9 chr3 199828397 199828507 -27696071 - Charlie8 DNA MER1_type -2244 173 54 220 286 0 0 chr3 199829246 199829316 -27695262 + T-rich Low_complexity Low_complexity 1 70 0 1618 108 65 0 chr3 199829814 199829932 -27694646 - AluSx SINE Alu -53 259 150 193 37 37 0 chr3 199829932 199829959 -27694619 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 1618 108 65 0 chr3 199829959 199830072 -27694506 - AluSx SINE Alu -162 150 13 430 259 46 9 chr3 199830096 199830204 -27694374 - L2 LINE L2 -5 3308 3197 1388 199 128 12 chr3 199830415 199830742 -27693836 - MLT1A1 LTR MaLR 0 365 1 2102 131 7 0 chr3 199831349 199831640 -27692938 - AluSq SINE Alu -17 296 4 24 0 0 0 chr3 199832565 199832589 -27691989 + AT_rich Low_complexity Low_complexity 1 24 0 380 295 102 93 chr3 199833301 199833789 -27690789 - L1M2 LINE L1 -5587 1262 755 1899 178 54 5 chr3 199834191 199834561 -27690017 - MLT1B LTR MaLR -2 388 1 24 0 0 0 chr3 199835269 199835293 -27689285 + AT_rich Low_complexity Low_complexity 1 24 0 2102 131 7 0 chr3 199836218 199836509 -27688069 + AluSq SINE Alu 4 296 -17 1388 199 128 12 chr3 199837116 199837443 -27687135 + MLT1A1 LTR MaLR 1 365 0 430 259 46 9 chr3 199837654 199837762 -27686816 + L2 LINE L2 3197 3308 -5 1693 160 65 0 chr3 199837786 199837895 -27686683 + AluSx SINE Alu 13 113 -199 199 0 65 0 chr3 199837895 199837926 -27686652 + (CAAA)n Simple_repeat Simple_repeat 2 34 0 1693 160 65 0 chr3 199837926 199838091 -27686487 + AluSx SINE Alu 113 305 -7 438 143 0 0 chr3 199838101 199838178 -27686400 + (GGAA)n Simple_repeat Simple_repeat 4 80 0 223 326 23 0 chr3 199839266 199839352 -27685226 - L2 LINE L2 -1 3271 3184 2384 95 0 16 chr3 199840829 199841144 -27683434 - AluSp SINE Alu -3 310 1 2178 213 31 6 chr3 199841263 199841774 -27682804 - L1M4 LINE L1 -405 5779 5256 898 191 50 72 chr3 199841781 199842059 -27682519 + MLT1B LTR MaLR 1 272 -118 2609 165 22 12 chr3 199842083 199842573 -27682005 - L1PB4 LINE L1 -13 6143 5649 2795 194 56 36 chr3 199842585 199843146 -27681432 - L1PB4 LINE L1 -748 5398 4817 1564 94 5 27 chr3 199843146 199843370 -27681208 - AluSg/x SINE Alu 0 312 94 2795 194 56 36 chr3 199843370 199843556 -27681022 - L1PB4 LINE L1 -1329 4817 4636 332 153 17 0 chr3 199843557 199843616 -27680962 + MLT1B LTR MaLR 285 344 -46 1545 255 49 4 chr3 199843637 199844107 -27680471 - L1M4 LINE L1 -914 5232 4742 2497 210 35 68 chr3 199844190 199844734 -27679844 - L1M4 LINE L1 -1409 4737 4177 2257 117 0 0 chr3 199844734 199845032 -27679546 + AluSx SINE Alu 1 298 -14 2497 210 35 68 chr3 199845032 199845138 -27679440 - L1M4 LINE L1 -1969 4177 4069 2165 133 48 20 chr3 199845138 199845492 -27679086 + THE1B LTR MaLR 1 364 0 10573 106 36 5 chr3 199845492 199847024 -27677554 + THE1B-int LTR MaLR 1 1580 0 2281 114 49 20 chr3 199847026 199847376 -27677202 + THE1B LTR MaLR 3 362 -2 2497 210 35 68 chr3 199847376 199847653 -27676925 - L1M4 LINE L1 -2077 4069 3835 306 293 50 40 chr3 199847995 199848193 -27676385 - L2 LINE L2 0 3313 3114 10403 72 11 1 chr3 199848335 199850498 -27674080 - L1PA6 LINE L1 -6 6148 3968 21 36 0 0 chr3 199850688 199850716 -27673862 + AT_rich Low_complexity Low_complexity 1 28 0 352 335 51 5 chr3 199850777 199850974 -27673604 + MIR SINE MIR 51 256 -6 1366 296 37 5 chr3 199851983 199852388 -27672190 - LTR16A LTR ERVL -7 443 26 210 300 191 9 chr3 199852436 199852546 -27672032 - MIR SINE MIR -113 149 20 214 387 42 0 chr3 199852780 199852899 -27671679 - MIR SINE MIR -109 153 30 180 0 0 0 chr3 199853716 199853736 -27670842 + (TG)n Simple_repeat Simple_repeat 1 20 0 307 194 21 0 chr3 199854649 199854742 -27669836 + (TG)n Simple_repeat Simple_repeat 2 96 0 2409 167 36 0 chr3 199855600 199856013 -27668565 + MSTA LTR MaLR 1 428 0 8459 176 46 13 chr3 199856015 199857613 -27666965 + MSTA-int LTR MaLR 2 1651 0 2223 169 39 5 chr3 199857613 199858027 -27666551 + MSTA LTR MaLR 1 428 0 6343 149 40 23 chr3 199858097 199859019 -27665559 + Tigger3b DNA MER2_type 20 968 -2060 1280 99 139 0 chr3 199859019 199859220 -27665358 + MER30 DNA MER1_type 1 229 -1 6343 149 40 23 chr3 199859220 199859471 -27665107 + Tigger3b DNA MER2_type 968 1213 -18 848 230 61 0 chr3 199859500 199859665 -27664913 - FAM SINE Alu 0 175 1 2203 96 4 0 chr3 199859940 199860253 -27664325 - AluY SINE Alu 0 314 1 1171 146 4 110 chr3 199861023 199861277 -27663301 - MLT1B LTR MaLR 0 390 164 863 163 0 27 chr3 199861289 199861436 -27663142 - FRAM SINE Alu -30 146 4 234 0 0 0 chr3 199861678 199861704 -27662874 + (T)n Simple_repeat Simple_repeat 1 26 0 429 177 129 65 chr3 199861748 199861872 -27662706 - MLT1B LTR MaLR -258 132 1 283 266 32 11 chr3 199862015 199862109 -27662469 + CT-rich Low_complexity Low_complexity 2 97 0 363 44 0 0 chr3 199862233 199862278 -27662300 + (TG)n Simple_repeat Simple_repeat 2 46 0 268 165 87 0 chr3 199862321 199862424 -27662154 + (TA)n Simple_repeat Simple_repeat 2 113 0 263 305 62 62 chr3 199862451 199862579 -27661999 - MIR SINE MIR -124 138 11 1352 236 0 7 chr3 199863166 199863459 -27661119 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr3 199863459 199863480 -27661098 + AT_rich Low_complexity Low_complexity 1 21 0 1720 163 39 23 chr3 199864905 199865211 -27659367 - AluJb SINE Alu -1 311 1 27 73 0 0 chr3 199865211 199865266 -27659312 + AT_rich Low_complexity Low_complexity 1 55 0 371 322 40 7 chr3 199865396 199865545 -27659033 - L3 LINE CR1 -86 1491 1338 2117 253 105 78 chr3 199865625 199866804 -27657774 + MER69B DNA AcHobo 1 1211 -15 309 304 81 6 chr3 199868182 199868343 -27656235 - Charlie8 DNA MER1_type -2244 173 1 220 286 0 0 chr3 199869031 199869101 -27655477 + T-rich Low_complexity Low_complexity 1 70 0 1411 90 0 0 chr3 199869598 199869775 -27654803 - AluSc SINE Alu -51 258 82 25 51 0 0 chr3 199869775 199869814 -27654764 + AT_rich Low_complexity Low_complexity 1 39 0 22 35 0 0 chr3 199870076 199870105 -27654473 + AT_rich Low_complexity Low_complexity 1 29 0 2534 156 11 113 chr3 199870939 199871497 -27653081 - MLT2B2 LTR ERVL -14 501 1 2297 57 0 3 chr3 199871593 199871923 -27652655 + AluY SINE Alu 1 329 0 468 232 237 14 chr3 199872128 199872335 -27652243 + MIR SINE MIR 2 254 -8 313 241 0 0 chr3 199872343 199872401 -27652177 + L2 LINE L2 3215 3272 0 373 320 114 17 chr3 199872401 199872576 -27652002 + MIR SINE MIR 21 212 -50 1433 212 83 68 chr3 199873066 199873562 -27651016 - MLT1D LTR MaLR 0 505 3 1289 157 9 5 chr3 199873751 199873961 -27650617 + AluJo SINE Alu 3 213 -99 252 0 0 0 chr3 199874015 199874043 -27650535 + (CACAA)n Simple_repeat Simple_repeat 5 32 0 375 251 114 92 chr3 199874840 199874938 -27649640 - MIR SINE MIR -3 259 165 21482 26 4 0 chr3 199874938 199878314 -27646264 - L1PA3 LINE L1 0 6155 2795 2248 75 0 17 chr3 199878321 199878614 -27645964 - AluY SINE Alu -23 288 1 375 251 114 92 chr3 199878614 199878734 -27645844 - MIR SINE MIR -102 160 28 2183 270 32 14 chr3 199879142 199879954 -27644624 + L1M4 LINE L1 3375 4201 -1945 4465 216 31 39 chr3 199879964 199882306 -27642272 + L1MB2 LINE L1 3797 6120 -51 2107 69 0 29 chr3 199882306 199882582 -27641996 + AluY SINE Alu 39 306 -5 4465 216 31 39 chr3 199882582 199882632 -27641946 + L1MB2 LINE L1 6120 6169 -2 10008 192 7 21 chr3 199882795 199883360 -27641218 + L1P5 LINE L1 2937 3508 -2643 2238 117 0 0 chr3 199883360 199883667 -27640911 + AluSx SINE Alu 1 307 -5 10008 192 7 21 chr3 199883667 199886001 -27638577 + L1P5 LINE L1 3508 5793 -358 223 159 0 32 chr3 199886003 199886066 -27638512 + (TA)n Simple_repeat Simple_repeat 2 62 0 270 219 0 0 chr3 199886886 199886950 -27637628 + A-rich Low_complexity Low_complexity 1 64 0 2162 114 3 0 chr3 199887900 199888198 -27636380 - AluSp SINE Alu -14 299 1 219 69 0 0 chr3 199888629 199888658 -27635920 + (TG)n Simple_repeat Simple_repeat 2 30 0 1820 186 54 15 chr3 199888827 199889219 -27635359 - L1MA6 LINE L1 -6 6294 5888 4455 170 71 23 chr3 199889221 199890741 -27633837 - L1MA6 LINE L1 -479 5821 4224 1105 327 56 47 chr3 199891683 199892277 -27632301 - L1M2c LINE L1 -6188 601 3 212 331 186 34 chr3 199892640 199892963 -27631615 - L2 LINE L2 -548 2766 2395 223 305 178 0 chr3 199893457 199893575 -27631003 - MIR SINE MIR -25 237 99 210 283 0 0 chr3 199893843 199893896 -27630682 + T-rich Low_complexity Low_complexity 1 53 0 4110 140 18 75 chr3 199894563 199895305 -27629273 - Tigger3(Golem) DNA MER2_type 0 3028 2338 2268 106 0 0 chr3 199895305 199895608 -27628970 + AluSg SINE Alu 3 305 -5 4110 140 18 75 chr3 199895608 199895702 -27628876 - Tigger3(Golem) DNA MER2_type -690 2338 2240 2405 156 25 25 chr3 199895702 199896182 -27628396 - L1M1 LINE L1 -4368 3197 2718 13482 192 31 13 chr3 199896191 199898932 -27625646 + L1MA4 LINE L1 2200 5037 -1263 2134 93 0 45 chr3 199898932 199899245 -27625333 + AluSc SINE Alu 1 299 -10 13482 192 31 13 chr3 199899245 199900523 -27624055 + L1MA4 LINE L1 5037 6291 -9 22 56 0 0 chr3 199900523 199900559 -27624019 + AT_rich Low_complexity Low_complexity 1 36 0 1189 161 32 132 chr3 199900579 199900675 -27623903 - Tigger3(Golem) DNA MER2_type -2721 308 204 2364 90 3 3 chr3 199900675 199900987 -27623591 - AluSq SINE Alu -1 312 1 1189 161 32 132 chr3 199900987 199901231 -27623347 - Tigger3(Golem) DNA MER2_type -2825 204 2 236 284 15 15 chr3 199901503 199901570 -27623008 - L2 LINE L2 -1 3312 3246 405 0 0 0 chr3 199901624 199901669 -27622909 + (CA)n Simple_repeat Simple_repeat 2 46 0 272 159 0 16 chr3 199901681 199901744 -27622834 + (TA)n Simple_repeat Simple_repeat 2 63 0 344 269 0 0 chr3 199901744 199901848 -27622730 + L1MC4 LINE L1 6600 6703 -1339 1653 190 4 0 chr3 199901873 199902152 -27622426 - AluJo SINE Alu -30 282 3 3544 183 52 3 chr3 199902174 199902873 -27621705 + MER44D DNA MER2_type 1 605 0 207 159 182 0 chr3 199903644 199903688 -27620890 - MIR3 SINE MIR -51 157 106 331 209 45 40 chr3 199903901 199904078 -27620500 + (TA)n Simple_repeat Simple_repeat 2 179 0 289 306 0 82 chr3 199904300 199904447 -27620131 - MIR SINE MIR -66 196 62 244 273 0 0 chr3 199904504 199904559 -27620019 + GA-rich Low_complexity Low_complexity 6 60 0 326 318 8 38 chr3 199904604 199904736 -27619842 - MIR SINE MIR -60 202 75 270 335 48 48 chr3 199913238 199913426 -27611152 + L2 LINE L2 3093 3280 -33 321 281 22 0 chr3 199914223 199914312 -27610266 + MIR SINE MIR 162 252 -10 201 284 75 0 chr3 199915177 199915244 -27609334 - MIR SINE MIR -83 179 108 189 277 50 40 chr3 199915249 199915350 -27609228 + L3b LINE CR1 1388 1489 -94 1875 102 3 35 chr3 199915594 199915878 -27608700 + AluSq SINE Alu 34 308 -5 279 179 0 0 chr3 199915907 199915974 -27608604 + (TG)n Simple_repeat Simple_repeat 2 68 0 24 53 0 0 chr3 199916412 199916450 -27608128 + AT_rich Low_complexity Low_complexity 1 38 0 197 297 78 16 chr3 199916478 199916542 -27608036 - MIR SINE MIR -187 75 8 28 29 0 0 chr3 199916644 199916679 -27607899 + AT_rich Low_complexity Low_complexity 1 35 0 1974 145 0 0 chr3 199917464 199917772 -27606806 + AluSx SINE Alu 1 308 0 515 288 73 11 chr3 199918087 199918264 -27606314 - MIR SINE MIR -39 223 36 256 267 43 52 chr3 199918400 199918516 -27606062 - L2 LINE L2 -1 3312 3198 294 29 0 0 chr3 199918569 199918604 -27605974 + (CA)n Simple_repeat Simple_repeat 2 36 0 225 83 0 0 chr3 199919030 199919066 -27605512 + (TC)n Simple_repeat Simple_repeat 2 37 0 1980 136 0 0 chr3 199919077 199919400 -27605178 - AluSg SINE Alu 0 323 1 196 261 29 43 chr3 199919548 199919617 -27604961 - MIR SINE MIR -24 238 171 207 351 101 7 chr3 199919686 199919834 -27604744 - L2 LINE L2 -214 3058 2897 1874 149 10 0 chr3 199920695 199920990 -27603588 + AluJo SINE Alu 15 312 0 24 0 0 0 chr3 199921763 199921787 -27602791 + AT_rich Low_complexity Low_complexity 1 24 0 1339 229 16 57 chr3 199922649 199923034 -27601544 - MLT1A2 LTR MaLR -2 372 4 267 331 31 99 chr3 199923508 199923831 -27600747 + L3 LINE CR1 1242 1542 -35 1835 291 114 41 chr3 199925519 199926572 -27598006 + L2 LINE L2 1711 3036 -277 1257 265 32 40 chr3 199926579 199927032 -27597546 - MLT1C LTR MaLR 0 467 12 722 336 25 0 chr3 199927140 199927414 -27597164 - MER46C DNA MER2_type -4 334 54 499 187 47 73 chr3 199927450 199927600 -27596978 + L2 LINE L2 3154 3299 -14 238 75 100 0 chr3 199928218 199928258 -27596320 - MLT2A2 LTR ERVL -8 445 402 294 229 0 0 chr3 199928283 199928353 -27596225 + (TA)n Simple_repeat Simple_repeat 1 70 0 229 224 17 0 chr3 199928353 199928411 -27596167 - L1MCa LINE L1 -4362 2064 2006 * 276 300 0 0 chr3 199928366 199928456 -27596122 + L1MC4 LINE L1 6614 6703 -1339 245 216 68 45 chr3 199928466 199928554 -27596024 - L1MC4 LINE L1 -1339 6703 6614 244 322 0 0 chr3 199928578 199928668 -27595910 + L1MC4 LINE L1 6614 6703 -1339 325 311 0 0 chr3 199928668 199928758 -27595820 + L1MC4 LINE L1 6614 6703 -1339 2941 101 0 2 chr3 199928764 199929169 -27595409 - MLT2A1 LTR ERVL -40 404 1 10124 74 2 9 chr3 199929169 199930473 -27594105 - HERVL-A1 LTR ERVL 0 5654 4360 8331 79 14 2 chr3 199930474 199931571 -27593007 - HERVL-A1 LTR ERVL -4544 1110 1 846 80 33 66 chr3 199931571 199931722 -27592856 - MLT2A1 LTR ERVL 0 444 299 543 297 50 11 chr3 199931724 199932031 -27592547 - AluSq SINE Alu 0 337 20 318 303 28 42 chr3 199932150 199932292 -27592286 + L2 LINE L2 3112 3251 -62 1690 186 3 7 chr3 199932328 199932618 -27591960 - AluJo SINE Alu -23 289 1 2490 59 0 3 chr3 199933610 199933917 -27590661 + MLT2A1 LTR ERVL 1 306 -138 2376 91 3 0 chr3 199933918 199934226 -27590352 + AluY SINE Alu 1 309 -2 185 331 123 8 chr3 199934309 199934439 -27590139 + L3b LINE CR1 1112 1256 -327 25 0 0 0 chr3 199935074 199935099 -27589479 + AT_rich Low_complexity Low_complexity 1 25 0 395 241 251 15 chr3 199935333 199935532 -27589046 + MIR SINE MIR 7 252 -10 21 0 0 0 chr3 199936101 199936122 -27588456 + AT_rich Low_complexity Low_complexity 1 21 0 9035 160 28 11 chr3 199936125 199937982 -27586596 + L1PA12 LINE L1 246 2657 -4924 1235 87 5 34 chr3 199938115 199938323 -27586255 - HERVL-A1 LTR ERVL -5452 202 1 846 80 33 66 chr3 199938323 199938474 -27586104 - MLT2A1 LTR ERVL 0 444 299 468 0 0 0 chr3 199938478 199938530 -27586048 + (T)n Simple_repeat Simple_repeat 1 52 0 26 30 0 0 chr3 199938535 199938568 -27586010 + GC_rich Low_complexity Low_complexity 1 33 0 227 353 14 10 chr3 199938819 199939108 -27585470 - MLT2A1 LTR ERVL -142 302 13 22 0 0 0 chr3 199939989 199940011 -27584567 + AT_rich Low_complexity Low_complexity 1 22 0 607 168 32 65 chr3 199940773 199940928 -27583650 - MER5B DNA MER1_type -1 177 28 180 135 0 0 chr3 199941286 199941323 -27583255 + (T)n Simple_repeat Simple_repeat 1 37 0 255 203 0 0 chr3 199941753 199941812 -27582766 + (CA)n Simple_repeat Simple_repeat 2 60 0 22 0 0 0 chr3 199941849 199941871 -27582707 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr3 199942011 199942035 -27582543 + AT_rich Low_complexity Low_complexity 1 24 0 1440 135 28 4 chr3 199942190 199942472 -27582106 - AluSx SINE Alu 0 314 27 1653 192 23 19 chr3 199943023 199943451 -27581127 - L1PA14 LINE L1 0 6161 5732 949 232 12 31 chr3 199944115 199944434 -27580144 + AluSq SINE Alu 1 313 0 12290 174 25 23 chr3 199944439 199947638 -27576940 + L1MA1 LINE L1 2580 5790 -512 2891 6 0 0 chr3 199947638 199947949 -27576629 + AluYa5 SINE Alu 1 311 0 12290 174 25 23 chr3 199947949 199948459 -27576119 + L1MA1 LINE L1 5790 6298 -4 29 0 0 0 chr3 199948463 199948492 -27576086 + AT_rich Low_complexity Low_complexity 1 29 0 535 249 58 37 chr3 199948626 199948815 -27575763 + L1ME3A LINE L1 5963 6155 -15 24 32 0 0 chr3 199949013 199949044 -27575534 + AT_rich Low_complexity Low_complexity 1 31 0 2470 156 17 2 chr3 199949115 199949537 -27575041 + MSTA LTR MaLR 1 428 0 29 47 0 0 chr3 199949765 199949808 -27574770 + AT_rich Low_complexity Low_complexity 1 43 0 376 326 74 21 chr3 199950146 199950336 -27574242 + L1ME LINE L1 5405 5604 -517 258 212 200 0 chr3 199951863 199951948 -27572630 - MER5A DNA MER1_type -77 112 11 211 323 85 39 chr3 199952065 199952195 -27572383 + MIR SINE MIR 101 236 -26 203 329 14 0 chr3 199952350 199952423 -27572155 + L3 LINE CR1 955 1028 -549 227 229 0 0 chr3 199953759 199953908 -27570670 + (TA)n Simple_repeat Simple_repeat 1 149 0 30 0 0 0 chr3 199954881 199954911 -27569667 + AT_rich Low_complexity Low_complexity 1 30 0 201 329 81 40 chr3 199955635 199955784 -27568794 + MER5B DNA MER1_type 24 178 0 1446 235 65 77 chr3 199956142 199956652 -27567926 + MLT1F1 LTR MaLR 64 567 0 379 357 39 28 chr3 199956980 199957162 -27567416 - MIR3 SINE MIR -1 207 24 36 23 0 0 chr3 199957780 199957823 -27566755 + AT_rich Low_complexity Low_complexity 1 43 0 198 0 0 0 chr3 199957829 199957851 -27566727 + (T)n Simple_repeat Simple_repeat 1 22 0 2029 119 0 20 chr3 199958913 199959208 -27565370 + AluSq SINE Alu 1 289 -24 196 330 85 11 chr3 199959208 199959302 -27565276 - MIR SINE MIR -12 250 150 596 322 88 13 chr3 199959403 199959642 -27564936 + MIR SINE MIR 6 262 0 190 384 0 0 chr3 199960520 199960606 -27563972 + MIR SINE MIR 57 142 -120 638 314 47 3 chr3 199961149 199961448 -27563130 + L1MEc LINE L1 34 345 -6051 434 237 101 35 chr3 199962770 199962939 -27561639 + HsTC2 DNA Tc2 1 1898 0 246 291 179 31 chr3 199963339 199963535 -27561043 + MIR SINE MIR 28 252 -10 21 0 0 0 chr3 199963769 199963790 -27560788 + AT_rich Low_complexity Low_complexity 1 21 0 2209 113 0 7 chr3 199963859 199964168 -27560410 - AluSx SINE Alu -5 307 1 196 333 101 29 chr3 199964218 199964356 -27560222 + MIR SINE MIR 3 150 -112 195 381 106 6 chr3 199965123 199965283 -27559295 + MIR SINE MIR 6 181 -81 21 0 0 0 chr3 199965389 199965410 -27559168 + AT_rich Low_complexity Low_complexity 1 21 0 5974 124 20 3 chr3 199965607 199966677 -27557901 + L1PB2 LINE L1 5068 6150 -1 1036 279 151 25 chr3 199968210 199968680 -27555898 - MLT1H LTR MaLR -8 541 13 13510 170 20 3 chr3 199968707 199971070 -27553508 - Tigger1 DNA MER2_type -16 2402 1 2311 96 0 13 chr3 199971325 199971639 -27552939 + AluY SINE Alu 1 310 -1 1479 206 7 14 chr3 199971842 199972133 -27552445 + AluJo SINE Alu 13 301 -11 1896 236 18 68 chr3 199972156 199972822 -27551756 - L1MC4a LINE L1 0 7808 7176 1132 193 47 137 chr3 199972830 199973378 -27551200 + L1MD3 LINE L1 6748 7246 -749 7779 47 0 11 chr3 199973870 199975633 -27548945 - L1PA5 LINE L1 -1 6153 4397 16234 60 2 2 chr3 199975633 199977746 -27546832 + L1P LINE L1 1111 3223 -2923 1928 106 18 7 chr3 199978062 199978336 -27546242 - AluSq SINE Alu -30 283 7 444 248 61 50 chr3 199978849 199979154 -27545424 - L2 LINE L2 -268 3045 2671 22 35 0 0 chr3 199979378 199979407 -27545171 + AT_rich Low_complexity Low_complexity 1 29 0 511 299 80 32 chr3 199979583 199979770 -27544808 + MIR SINE MIR 52 247 -15 22 0 0 0 chr3 199980061 199980083 -27544495 + AT_rich Low_complexity Low_complexity 1 22 0 2353 81 0 3 chr3 199980417 199980724 -27543854 - AluY SINE Alu -5 306 1 726 260 25 50 chr3 199981062 199981304 -27543274 + MIR SINE MIR 1 236 -26 2176 107 3 0 chr3 199982640 199982931 -27541647 + AluSp SINE Alu 3 294 -19 299 253 13 13 chr3 199983729 199983808 -27540770 + MIR SINE MIR 71 149 -113 184 322 85 51 chr3 199984015 199984192 -27540386 - MER5A DNA MER1_type -6 183 1 905 132 0 0 chr3 199984333 199984469 -27540109 + FLAM_C SINE Alu 2 137 -6 213 331 137 16 chr3 199984491 199984534 -27540044 - L2 LINE L2 -35 3237 3201 180 0 0 0 chr3 199984534 199984554 -27540024 + (CAA)n Simple_repeat Simple_repeat 2 21 0 213 331 137 16 chr3 199984554 199984634 -27539944 - L2 LINE L2 -71 3201 3099 349 259 26 26 chr3 199986523 199986639 -27537939 + MER58A DNA MER1_type 1 116 0 452 289 5 27 chr3 199986639 199986827 -27537751 + L1MA10 LINE L1 5988 6333 -1 509 276 81 38 chr3 199986830 199987040 -27537538 - MER5C DNA MER1_type -105 219 1 202 209 0 23 chr3 199987370 199987413 -27537165 + L2 LINE L2 3271 3312 -1 18014 176 12 10 chr3 199987819 199994859 -27529719 - L1PA14 LINE L1 0 7599 1 384 241 60 43 chr3 199994992 199995108 -27529470 - MIR SINE MIR -28 234 117 1934 128 20 0 chr3 199995574 199995872 -27528706 + AluY SINE Alu 6 309 -2 592 288 45 41 chr3 199996132 199996375 -27528203 + MIR SINE MIR 2 245 -17 252 274 0 0 chr3 199996479 199996530 -27528048 + polypurine Low_complexity Low_complexity 3 53 0 180 135 0 0 chr3 199997059 199997096 -27527482 + (T)n Simple_repeat Simple_repeat 1 37 0 243 203 0 0 chr3 199997526 199997585 -27526993 + (CA)n Simple_repeat Simple_repeat 2 60 0 22 0 0 0 chr3 199997622 199997644 -27526934 + AT_rich Low_complexity Low_complexity 1 22 0 27 29 0 0 chr3 199997774 199997808 -27526770 + AT_rich Low_complexity Low_complexity 1 34 0 2195 92 0 0 chr3 199997963 199998276 -27526302 - AluSx SINE Alu 0 314 2 1270 278 102 53 chr3 199998352 199998631 -27525947 - MLT1G1 LTR MaLR -12 583 319 1743 154 18 96 chr3 199998631 199999026 -27525552 - MLT1A1 LTR MaLR 0 365 2 1270 278 102 53 chr3 199999026 199999296 -27525282 - MLT1G1 LTR MaLR -276 319 7 536 284 70 10 chr3 199999781 199999982 -27524596 + MER58C DNA MER1_type 1 213 -2 200 296 185 12 chr3 200000060 200000141 -27524437 - MER5A DNA MER1_type -92 97 3 186 171 0 0 chr3 200000695 200000736 -27523842 + (TCTA)n Simple_repeat Simple_repeat 2 42 0 191 362 54 72 chr3 200001684 200001963 -27522615 + L2 LINE L2 2841 3114 -158 323 237 0 89 chr3 200002608 200002743 -27521835 - MER94 DNA DNA 0 134 12 665 278 27 40 chr3 200002801 200003024 -27521554 - MIR SINE MIR -38 224 5 501 17 0 0 chr3 200003093 200003151 -27521427 + (TCCCC)n Simple_repeat Simple_repeat 5 62 0 370 257 48 9 chr3 200003162 200003267 -27521311 - L2 LINE L2 -9 3304 3196 260 246 0 16 chr3 200003473 200003534 -27521044 - L2 LINE L2 0 3313 3254 781 253 0 32 chr3 200005527 200005717 -27518861 - MER5A DNA MER1_type 0 189 6 531 248 69 37 chr3 200006195 200006413 -27518165 + MIR SINE MIR 36 260 -2 31 26 0 0 chr3 200008001 200008039 -27516539 + AT_rich Low_complexity Low_complexity 1 38 0 243 337 61 20 chr3 200008039 200008137 -27516441 + L2 LINE L2 3212 3313 0 257 363 47 35 chr3 200009908 200010079 -27514499 + MIR3 SINE MIR 19 191 -17 358 217 57 11 chr3 200010110 200010219 -27514359 + MLT1J2 LTR MaLR 17 132 -315 785 237 0 12 chr3 200010672 200010841 -27513737 + AluJo SINE Alu 121 287 -25 278 152 71 20 chr3 200010842 200010941 -27513637 + (TATAA)n Simple_repeat Simple_repeat 5 108 0 737 167 0 17 chr3 200010956 200011076 -27513502 - FLAM_C SINE Alu -17 126 9 357 318 40 20 chr3 200011324 200011472 -27513106 - MIR3 SINE MIR -1 207 57 344 281 0 0 chr3 200011600 200011682 -27512896 - MIR SINE MIR -13 249 168 810 208 198 96 chr3 200011772 200012085 -27512493 + MLT1F1 LTR MaLR 131 475 -92 306 90 0 45 chr3 200012170 200012237 -27512341 + (TA)n Simple_repeat Simple_repeat 2 65 0 1141 243 95 16 chr3 200012597 200012914 -27511664 + MER2 DNA MER2_type 1 342 -3 186 184 0 26 chr3 200013493 200013531 -27511047 + MIR SINE MIR 218 254 -8 23 0 0 0 chr3 200013867 200013890 -27510688 + AT_rich Low_complexity Low_complexity 1 23 0 205 159 68 23 chr3 200014032 200014076 -27510502 - L2 LINE L2 -93 3220 3175 851 261 95 148 chr3 200014093 200014756 -27509822 - L2 LINE L2 -949 2365 1797 1704 244 92 11 chr3 200014756 200015280 -27509298 - MLT1F1 LTR MaLR 0 567 2 851 261 95 148 chr3 200015280 200015856 -27508722 - L2 LINE L2 -1517 1797 1192 216 429 0 0 chr3 200015865 200015956 -27508622 + L2 LINE L2 2574 2664 -650 767 333 124 16 chr3 200016099 200016648 -27507930 - L2 LINE L2 -555 2759 2152 355 284 107 53 chr3 200016847 200017016 -27507562 + MER5B DNA MER1_type 1 178 0 186 43 0 0 chr3 200017169 200017192 -27507386 + (A)n Simple_repeat Simple_repeat 1 23 0 1120 239 103 61 chr3 200017211 200017704 -27506874 + MLT1H LTR MaLR 36 549 0 467 287 48 64 chr3 200018052 200018303 -27506275 - MIR SINE MIR -3 259 13 2002 96 4 0 chr3 200018310 200018570 -27506008 - AluSg SINE Alu -45 265 5 259 358 133 26 chr3 200018703 200018929 -27505649 - MIR SINE MIR -6 256 7 346 321 140 15 chr3 200019029 200019300 -27505278 + L2 LINE L2 3005 3309 -4 13482 192 30 14 chr3 200019824 200020840 -27503738 - L1MA4 LINE L1 -282 6018 5020 2134 93 0 45 chr3 200020840 200021153 -27503425 - AluSc SINE Alu -10 299 1 13482 192 30 14 chr3 200021153 200023894 -27500684 - L1MA4 LINE L1 -1280 5020 2200 2405 156 25 25 chr3 200023903 200024383 -27500195 + L1M1 LINE L1 2718 3197 -4368 4110 140 18 75 chr3 200024383 200024477 -27500101 + Tigger3(Golem) DNA MER2_type 2240 2338 -690 2268 106 0 0 chr3 200024477 200024780 -27499798 - AluSg SINE Alu -5 305 3 4110 140 18 75 chr3 200024780 200025522 -27499056 + Tigger3(Golem) DNA MER2_type 2338 3028 0 210 283 0 0 chr3 200026189 200026242 -27498336 + A-rich Low_complexity Low_complexity 1 53 0 223 305 178 0 chr3 200026510 200026628 -27497950 + MIR SINE MIR 99 237 -25 212 331 186 34 chr3 200027121 200027444 -27497134 + L2 LINE L2 2395 2766 -548 1085 325 57 47 chr3 200027807 200028400 -27496178 + L1M2c LINE L1 3 601 -6188 4294 174 71 23 chr3 200029342 200030863 -27493715 + L1MA6 LINE L1 4224 5821 -479 1820 186 54 15 chr3 200030865 200031257 -27493321 + L1MA6 LINE L1 5888 6294 -6 219 69 0 0 chr3 200031426 200031455 -27493123 + (CA)n Simple_repeat Simple_repeat 2 30 0 2162 114 3 0 chr3 200031886 200032184 -27492394 + AluSp SINE Alu 1 299 -14 270 219 0 0 chr3 200033134 200033198 -27491380 + T-rich Low_complexity Low_complexity 1 64 0 223 159 0 32 chr3 200034019 200034082 -27490496 + (TA)n Simple_repeat Simple_repeat 2 62 0 10008 192 7 21 chr3 200034084 200036418 -27488160 - L1P5 LINE L1 -358 5793 3508 2238 117 0 0 chr3 200036418 200036725 -27487853 - AluSx SINE Alu -5 307 1 10008 192 7 21 chr3 200036725 200037290 -27487288 - L1P5 LINE L1 -2643 3508 2937 4465 216 31 39 chr3 200037453 200037503 -27487075 - L1MB2 LINE L1 -2 6169 6120 2107 69 0 29 chr3 200037503 200037779 -27486799 - AluY SINE Alu -5 306 39 4465 216 31 39 chr3 200037779 200040121 -27484457 - L1MB2 LINE L1 -51 6120 3797 2183 270 32 14 chr3 200040131 200040943 -27483635 - L1M4 LINE L1 -1945 4201 3375 375 251 114 92 chr3 200041351 200041471 -27483107 + MIR SINE MIR 28 144 -118 2248 75 0 17 chr3 200041471 200041764 -27482814 + AluY SINE Alu 1 288 -23 21512 26 1 0 chr3 200041771 200045146 -27479432 + L1PA3 LINE L1 2795 6155 0 375 251 114 92 chr3 200045146 200045244 -27479334 + MIR SINE MIR 149 259 -3 252 0 0 0 chr3 200046041 200046069 -27478509 + (TTGTG)n Simple_repeat Simple_repeat 5 32 0 1289 157 9 5 chr3 200046123 200046333 -27478245 - AluJo SINE Alu -99 213 3 1443 213 88 70 chr3 200046527 200047016 -27477562 + MLT1D LTR MaLR 8 505 0 373 320 114 17 chr3 200047506 200047681 -27476897 - MIR SINE MIR -50 212 21 313 241 0 0 chr3 200047681 200047739 -27476839 - L2 LINE L2 0 3272 3215 468 232 237 14 chr3 200047747 200047954 -27476624 - MIR SINE MIR -8 254 2 2118 86 6 29 chr3 200048127 200048159 -27476419 - AluY SINE Alu -3 308 277 336 64 0 0 chr3 200048159 200048206 -27476372 + (TTG)n Simple_repeat Simple_repeat 2 48 0 2118 86 6 29 chr3 200048206 200048488 -27476090 - AluY SINE Alu -34 277 1 2431 59 3 3 chr3 200048489 200048795 -27475783 - MLT2A1 LTR ERVL -138 306 1 1668 186 3 7 chr3 200049787 200050077 -27474501 + AluJo SINE Alu 1 289 -23 649 350 73 37 chr3 200050113 200050639 -27473939 - L2 LINE L2 -62 3251 2700 257 344 110 25 chr3 200052555 200052718 -27471860 - L2 LINE L2 0 3272 3096 26 50 0 0 chr3 200053210 200053250 -27471328 + AT_rich Low_complexity Low_complexity 1 40 0 8709 184 61 27 chr3 200053520 200054921 -27469657 + L1M1 LINE L1 27 1379 -6186 1885 131 10 3 chr3 200054921 200055212 -27469366 + AluSx SINE Alu 9 301 -11 8709 184 61 27 chr3 200055212 200056580 -27467998 + L1M1 LINE L1 1379 2699 -4866 2317 98 0 9 chr3 200056580 200056896 -27467682 + AluSq SINE Alu 1 313 0 8709 184 61 27 chr3 200056896 200057687 -27466891 + L1M1 LINE L1 2699 4798 -2767 1180 95 0 53 chr3 200057687 200057876 -27466702 + AluSp SINE Alu 130 308 -5 279 179 0 0 chr3 200057905 200057972 -27466606 + (TG)n Simple_repeat Simple_repeat 2 68 0 24 53 0 0 chr3 200058410 200058448 -27466130 + AT_rich Low_complexity Low_complexity 1 38 0 198 297 78 16 chr3 200058476 200058540 -27466038 - MIR SINE MIR -187 75 8 28 29 0 0 chr3 200058642 200058677 -27465901 + AT_rich Low_complexity Low_complexity 1 35 0 1938 145 0 0 chr3 200059461 200059769 -27464809 + AluSx SINE Alu 1 308 0 509 288 73 11 chr3 200060084 200060261 -27464317 - MIR SINE MIR -39 223 36 257 267 43 52 chr3 200060397 200060513 -27464065 - L2 LINE L2 -1 3312 3198 294 29 0 0 chr3 200060566 200060601 -27463977 + (CA)n Simple_repeat Simple_repeat 2 36 0 225 83 0 0 chr3 200061027 200061063 -27463515 + (TC)n Simple_repeat Simple_repeat 2 37 0 1943 136 0 0 chr3 200061074 200061397 -27463181 - AluSg SINE Alu 0 323 1 194 261 29 43 chr3 200061545 200061614 -27462964 - MIR SINE MIR -24 238 171 210 351 101 7 chr3 200061683 200061831 -27462747 - L2 LINE L2 -214 3058 2897 1853 149 10 0 chr3 200062692 200062987 -27461591 + AluJo SINE Alu 15 312 0 24 0 0 0 chr3 200063760 200063784 -27460794 + AT_rich Low_complexity Low_complexity 1 24 0 1336 229 16 57 chr3 200064646 200065031 -27459547 - MLT1A2 LTR MaLR -2 372 4 278 328 31 99 chr3 200065505 200065828 -27458750 + L3 LINE CR1 1242 1542 -35 2425 94 11 3 chr3 200068183 200068533 -27456045 - THE1A LTR MaLR 0 355 3 183 306 106 12 chr3 200068686 200068771 -27455807 + L2 LINE L2 2990 3082 -231 527 195 201 35 chr3 200068774 200068943 -27455635 - MER34 LTR ERV1 -307 235 39 333 0 0 0 chr3 200068944 200068981 -27455597 + (TG)n Simple_repeat Simple_repeat 2 38 0 2147 117 0 0 chr3 200068985 200069276 -27455302 - AluSx SINE Alu -21 291 1 1638 213 31 18 chr3 200069574 200069959 -27454619 - MLT1B LTR MaLR 0 390 1 2116 100 13 13 chr3 200069991 200070291 -27454287 + AluSp SINE Alu 1 300 -13 1842 179 52 0 chr3 200070845 200071175 -27453403 - MER7A DNA MER2_type -1 345 1 253 321 121 12 chr3 200071695 200071860 -27452718 + MIR SINE MIR 80 262 0 201 121 0 0 chr3 200072061 200072094 -27452484 + (GA)n Simple_repeat Simple_repeat 1 33 0 1467 237 80 81 chr3 200072675 200072736 -27451842 + MLT1E LTR MaLR 3 63 -442 482 81 68 0 chr3 200072736 200072810 -27451768 + MADE1 DNA Mariner 2 80 0 1467 237 80 81 chr3 200072810 200073341 -27451237 + MLT1E LTR MaLR 63 505 0 816 172 12 31 chr3 200074375 200074538 -27450040 + L1MA9 LINE L1 5858 6017 -295 1171 107 0 0 chr3 200074539 200074698 -27449880 - AluSq SINE Alu -154 159 1 241 307 13 0 chr3 200074698 200074773 -27449805 + MIR3 SINE MIR 79 154 -54 383 241 251 15 chr3 200075263 200075462 -27449116 - MIR SINE MIR -10 252 7 25 0 0 0 chr3 200075696 200075721 -27448857 + AT_rich Low_complexity Low_complexity 1 25 0 190 331 123 8 chr3 200076356 200076486 -27448092 - L3b LINE CR1 -327 1256 1112 2526 62 0 0 chr3 200076569 200076878 -27447700 - AluY SINE Alu -2 309 1 21 0 0 0 chr3 200076956 200076977 -27447601 + AT_rich Low_complexity Low_complexity 1 21 0 418 350 104 20 chr3 200077133 200077603 -27446975 + L2 LINE L2 2698 3272 0 761 230 0 6 chr3 200077631 200077792 -27446786 + FAM SINE Alu 5 164 -11 21 36 0 0 chr3 200078447 200078475 -27446103 + AT_rich Low_complexity Low_complexity 1 28 0 924 297 39 29 chr3 200078942 200079323 -27445255 - MLT1J LTR MaLR -31 480 96 226 350 134 0 chr3 200079513 200079610 -27444968 - L2 LINE L2 -10 3303 3194 2483 48 0 3 chr3 200080076 200080371 -27444207 - AluY SINE Alu -17 294 1 1963 250 33 16 chr3 200080371 200080700 -27443878 - MER74B LTR ERVL -75 547 206 1902 206 3 3 chr3 200080700 200081065 -27443513 - MLT1A1 LTR MaLR 0 365 1 1963 250 33 16 chr3 200081065 200081219 -27443359 - MER74B LTR ERVL -416 206 56 578 262 146 0 chr3 200081721 200081885 -27442693 + MER5A DNA MER1_type 2 189 0 2255 107 3 0 chr3 200082943 200083252 -27441326 + AluSp SINE Alu 1 310 -3 368 102 71 0 chr3 200083510 200083608 -27440970 + (TA)n Simple_repeat Simple_repeat 2 106 0 254 217 0 36 chr3 200083621 200083704 -27440874 + T-rich Low_complexity Low_complexity 4 83 0 2749 6 3 3 chr3 200084560 200084871 -27439707 + AluYa5 SINE Alu 1 311 0 1360 182 16 62 chr3 200084899 200085067 -27439511 - AluJo SINE Alu -18 294 145 240 59 0 0 chr3 200085067 200085101 -27439477 + (TA)n Simple_repeat Simple_repeat 1 34 0 1360 182 16 62 chr3 200085101 200085240 -27439338 - AluJo SINE Alu -167 145 1 1688 198 99 3 chr3 200085756 200086110 -27438468 - MLT1C LTR MaLR 0 467 80 431 254 39 31 chr3 200086487 200086617 -27437961 - L2 LINE L2 -1 3312 3182 31 44 0 0 chr3 200086778 200086823 -27437755 + AT_rich Low_complexity Low_complexity 1 45 0 29 28 0 0 chr3 200087278 200087314 -27437264 + AT_rich Low_complexity Low_complexity 1 36 0 382 329 53 19 chr3 200088624 200088831 -27435747 - L2 LINE L2 0 3313 3100 1526 228 60 29 chr3 200089019 200089467 -27435111 - MLT1C LTR MaLR 0 467 6 27 29 0 0 chr3 200090655 200090689 -27433889 + AT_rich Low_complexity Low_complexity 1 34 0 2429 68 0 0 chr3 200091670 200091966 -27432612 + AluY SINE Alu 1 296 -15 4279 100 31 9 chr3 200092096 200092448 -27432130 - L1PB2 LINE L1 0 6151 5775 447 19 0 0 chr3 200092448 200092500 -27432078 + (TG)n Simple_repeat Simple_repeat 2 53 0 4279 100 31 9 chr3 200092500 200092815 -27431763 - L1PB2 LINE L1 -376 5775 5469 1925 128 35 3 chr3 200092997 200093285 -27431293 + AluSq SINE Alu 1 297 -16 306 0 0 0 chr3 200093288 200093322 -27431256 + (CAA)n Simple_repeat Simple_repeat 2 35 0 239 275 29 0 chr3 200093580 200093649 -27430929 - MIR SINE MIR -1 261 191 572 189 13 59 chr3 200093758 200093911 -27430667 + MER5B DNA MER1_type 32 177 -1 22 0 0 0 chr3 200094673 200094695 -27429883 + AT_rich Low_complexity Low_complexity 1 22 0 259 189 54 68 chr3 200095300 200095360 -27429218 + MLT1B LTR MaLR 11 69 -321 2079 181 31 3 chr3 200095360 200095741 -27428837 + MSTB1 LTR MaLR 1 392 -40 314 375 54 66 chr3 200146495 200146754 -27377824 + L2 LINE L2 3014 3269 -3 493 286 89 39 chr3 200148300 200148503 -27376075 + MIR SINE MIR 26 238 -24 1469 211 28 28 chr3 200149413 200149801 -27374777 - L1 LINE L1 -1381 4765 4378 306 73 0 0 chr3 200151520 200151561 -27373017 + (TG)n Simple_repeat Simple_repeat 2 42 0 1886 142 80 3 chr3 200151845 200152183 -27372395 - THE1B LTR MaLR 0 364 1 315 272 121 35 chr3 200152404 200152577 -27372001 + MIR SINE MIR 8 195 -67 180 304 116 36 chr3 200153396 200153534 -27371044 + L3b LINE CR1 1120 1268 -315 2044 101 3 11 chr3 200153603 200153890 -27370688 + AluSx SINE Alu 1 285 -27 21 0 0 0 chr3 200153891 200153912 -27370666 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 200154760 200154781 -27369797 + AT_rich Low_complexity Low_complexity 1 21 0 21 0 0 0 chr3 200155184 200155205 -27369373 + AT_rich Low_complexity Low_complexity 1 21 0 562 333 188 29 chr3 200155543 200156378 -27368200 + L2 LINE L2 1701 2668 -646 902 176 34 23 chr3 200156378 200156554 -27368024 - MER58A DNA MER1_type 0 224 47 386 310 71 26 chr3 200156576 200156731 -27367847 + L2 LINE L2 2683 2844 -470 573 213 49 25 chr3 200156790 200156912 -27367666 - MER45A DNA AcHobo 0 178 54 186 325 65 52 chr3 200156960 200157114 -27367464 + L2 LINE L2 2934 3089 -183 320 313 83 21 chr3 200158594 200158738 -27365840 + MIR SINE MIR 32 184 -78 21 0 0 0 chr3 200159625 200159646 -27364932 + AT_rich Low_complexity Low_complexity 1 21 0 353 105 47 0 chr3 200159767 200159853 -27364725 + (TA)n Simple_repeat Simple_repeat 1 90 0 297 282 88 34 chr3 200159944 200160238 -27364340 + L1ME4a LINE L1 5636 5945 -176 22 35 0 0 chr3 200160382 200160411 -27364167 + AT_rich Low_complexity Low_complexity 1 29 0 2566 152 43 12 chr3 200161025 200161533 -27363045 + L1MA4A LINE L1 5774 6297 -6 1652 169 0 7 chr3 200162343 200162686 -27361892 + AluY SINE Alu 1 341 0 874 205 0 0 chr3 200162689 200162840 -27361738 + AluSg/x SINE Alu 136 286 -26 592 309 68 38 chr3 200163590 200164059 -27360519 + Tigger8 DNA MER2_type 32 514 -152 1945 223 25 48 chr3 200165695 200166210 -27358368 + MLT1D LTR MaLR 3 505 0 313 280 184 16 chr3 200166935 200167060 -27357518 - MIR SINE MIR -25 237 92 204 40 0 0 chr3 200167075 200167100 -27357478 + (TG)n Simple_repeat Simple_repeat 1 25 0 438 260 76 44 chr3 200167224 200167474 -27357104 + MIR SINE MIR 1 258 -4 834 238 22 0 chr3 200167828 200168013 -27356565 - MER5A DNA MER1_type 0 189 1 296 319 11 0 chr3 200168464 200168555 -27356023 + L2 LINE L2 3177 3268 -4 27 0 0 0 chr3 200169453 200169480 -27355098 + AT_rich Low_complexity Low_complexity 1 27 0 23 86 0 0 chr3 200169918 200169976 -27354602 + AT_rich Low_complexity Low_complexity 1 58 0 579 304 76 44 chr3 200169976 200170226 -27354352 - MIR SINE MIR 0 262 5 219 261 202 25 chr3 200170389 200170508 -27354070 - L3 LINE CR1 -219 1358 1219 5661 95 28 25 chr3 200170610 200171775 -27352803 - SVA Other Other -518 868 14 403 186 52 10 chr3 200171775 200171872 -27352706 - L1 LINE L1 -1729 4417 4317 182 243 54 68 chr3 200171901 200171975 -27352603 - MIR SINE MIR -122 140 68 316 279 28 59 chr3 200175320 200175607 -27348971 - L1ME4a LINE L1 -216 5905 5628 1911 120 32 0 chr3 200175628 200175787 -27348791 - AluSx SINE Alu -14 298 125 252 0 0 0 chr3 200175787 200175815 -27348763 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1911 120 32 0 chr3 200175815 200175939 -27348639 - AluSx SINE Alu -187 125 6 484 241 114 73 chr3 200176357 200176625 -27347953 - MER46C DNA MER2_type -5 333 48 458 229 124 0 chr3 200176625 200176768 -27347810 - FLAM_A SINE Alu 0 156 1 484 241 114 73 chr3 200176768 200176814 -27347764 - MER46C DNA MER2_type -290 48 5 342 0 0 0 chr3 200176908 200176946 -27347632 + (TA)n Simple_repeat Simple_repeat 2 39 0 344 354 61 9 chr3 200177576 200177788 -27346790 - L3b LINE CR1 -148 1435 1213 220 261 51 102 chr3 200177915 200178072 -27346506 - L2 LINE L2 -2 3311 3163 385 304 109 22 chr3 200178085 200178269 -27346309 + MIR SINE MIR 37 236 -26 272 345 78 28 chr3 200178292 200178434 -27346144 - L2 LINE L2 -3 3269 3121 201 382 73 0 chr3 200180098 200180221 -27344357 + L2 LINE L2 3127 3258 -14 556 281 152 0 chr3 200180483 200180700 -27343878 - MIR SINE MIR -10 252 3 22 0 0 0 chr3 200181060 200181082 -27343496 + AT_rich Low_complexity Low_complexity 1 22 0 230 245 0 0 chr3 200181805 200181858 -27342720 + L2 LINE L2 3220 3272 0 249 344 46 38 chr3 200181876 200182007 -27342571 - MIR SINE MIR -123 139 8 25 31 0 0 chr3 200182149 200182181 -27342397 + AT_rich Low_complexity Low_complexity 1 32 0 349 277 51 7 chr3 200182553 200182690 -27341888 - L1ME4a LINE L1 0 6121 5979 22 35 0 0 chr3 200184922 200184951 -27339627 + AT_rich Low_complexity Low_complexity 1 29 0 5266 122 22 21 chr3 200185197 200185888 -27338690 - L1PA16 LINE L1 -9 6157 5462 2056 126 0 0 chr3 200185888 200186239 -27338339 + AluSq SINE Alu 1 351 0 5266 122 22 21 chr3 200186239 200186404 -27338174 - L1PA16 LINE L1 -704 5462 5299 24 32 0 0 chr3 200186987 200187018 -27337560 + AT_rich Low_complexity Low_complexity 1 31 0 391 300 118 0 chr3 200188745 200188915 -27335663 + MIR SINE MIR 73 262 0 2229 76 3 21 chr3 200189631 200189945 -27334633 - AluSp SINE Alu 0 309 1 1887 146 27 0 chr3 200190211 200190505 -27334073 - AluSx SINE Alu -10 302 1 2360 86 3 0 chr3 200190840 200191144 -27333434 - AluSg SINE Alu -5 305 1 301 278 119 40 chr3 200191688 200191814 -27332764 - L2 LINE L2 -3 3269 3134 236 322 124 8 chr3 200191851 200191972 -27332606 + MIR SINE MIR 96 230 -32 321 26 0 0 chr3 200192055 200192093 -27332485 + (CA)n Simple_repeat Simple_repeat 2 39 0 318 50 0 0 chr3 200192306 200192346 -27332232 + (CA)n Simple_repeat Simple_repeat 2 41 0 243 0 0 0 chr3 200192516 200192543 -27332035 + (T)n Simple_repeat Simple_repeat 1 27 0 279 284 144 67 chr3 200193672 200193999 -27330579 + L2 LINE L2 2926 3277 -36 21 0 0 0 chr3 200194107 200194128 -27330450 + AT_rich Low_complexity Low_complexity 1 21 0 290 254 75 134 chr3 200196100 200196252 -27328326 - L2 LINE L2 -7 3306 3147 189 0 0 0 chr3 200196252 200196273 -27328305 + (CA)n Simple_repeat Simple_repeat 2 22 0 290 254 75 134 chr3 200196273 200196602 -27327976 - L2 LINE L2 -166 3147 2854 922 222 11 0 chr3 200196602 200196778 -27327800 - MER45A DNA AcHobo 0 178 1 290 254 75 134 chr3 200196778 200196859 -27327719 - L2 LINE L2 -459 2854 2770 300 309 0 0 chr3 200196898 200196979 -27327599 - MIR3 SINE MIR -49 159 79 638 329 0 39 chr3 200197119 200197374 -27327204 + MIR SINE MIR 15 259 -3 226 265 29 0 chr3 200197599 200197667 -27326911 - L2 LINE L2 0 3313 3244 394 250 79 40 chr3 200198721 200198873 -27325705 + MLT1B LTR MaLR 4 161 -229 2269 77 7 7 chr3 200198873 200199172 -27325406 + AluSp SINE Alu 2 300 -13 341 22 22 0 chr3 200199239 200199285 -27325293 + (TG)n Simple_repeat Simple_repeat 2 48 0 343 374 8 0 chr3 200199438 200199561 -27325017 - L2 LINE L2 0 3272 3149 2224 101 0 3 chr3 200201297 200201593 -27322985 + AluSx SINE Alu 6 300 -12 605 262 165 10 chr3 200203033 200203240 -27321338 + MIR SINE MIR 17 234 -28 344 250 85 74 chr3 200203761 200203937 -27320641 - MER5B DNA MER1_type 0 178 1 464 274 28 39 chr3 200204387 200204566 -27320012 + MER5B DNA MER1_type 1 177 -1 254 231 207 25 chr3 200206044 200206165 -27318413 + MIR SINE MIR 120 262 0 205 280 0 0 chr3 200206794 200206844 -27317734 - L2 LINE L2 0 3272 3223 303 177 0 0 chr3 200208438 200208500 -27316078 + CT-rich Low_complexity Low_complexity 3 64 0 1705 179 13 7 chr3 200208500 200208807 -27315771 - AluSx SINE Alu -3 309 1 26 0 0 0 chr3 200208987 200209013 -27315565 + AT_rich Low_complexity Low_complexity 1 26 0 2039 103 69 0 chr3 200209029 200209319 -27315259 - AluSp SINE Alu -2 311 2 389 242 0 81 chr3 200209866 200209990 -27314588 - LTR67 LTR ERVL -6 551 438 225 132 0 0 chr3 200212921 200212959 -27311619 + (TA)n Simple_repeat Simple_repeat 2 39 0 1732 168 14 43 chr3 200213144 200213500 -27311078 - L1M2 LINE L1 -743 5403 5202 1411 210 3 32 chr3 200213500 200213809 -27310769 - AluJo SINE Alu -9 303 4 1732 168 14 43 chr3 200213809 200214042 -27310536 - L1M2 LINE L1 -944 5202 4964 1985 159 57 2 chr3 200214045 200214911 -27309667 - L1M2 LINE L1 -1381 4765 3685 28 48 0 0 chr3 200215562 200215604 -27308974 + AT_rich Low_complexity Low_complexity 1 42 0 404 316 57 40 chr3 200215830 200216007 -27308571 + MIR SINE MIR 31 210 -52 459 249 86 20 chr3 200216353 200216534 -27308044 + L1M4 LINE L1 5587 5796 -388 38 66 0 28 chr3 200216812 200216918 -27307660 + AT_rich Low_complexity Low_complexity 1 103 0 23 0 0 0 chr3 200218016 200218039 -27306539 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 200218118 200218141 -27306437 + AT_rich Low_complexity Low_complexity 1 23 0 222 222 0 19 chr3 200218266 200218320 -27306258 + (TTCA)n Simple_repeat Simple_repeat 4 56 0 2027 309 34 25 chr3 200219393 200220191 -27304387 + L1MA9 LINE L1 695 1499 -5669 5379 204 55 13 chr3 200220199 200221739 -27302839 + L1MA9 LINE L1 5010 6604 -729 717 274 17 47 chr3 200221736 200221810 -27302768 + L1MA9 LINE L1 6994 7069 -258 * 2580 25 0 19 chr3 200221810 200222125 -27302453 + AluY SINE Alu 1 309 -2 717 274 17 47 chr3 200222125 200222359 -27302219 + L1MA9 LINE L1 7069 7283 -44 21 0 0 0 chr3 200222361 200222382 -27302196 + AT_rich Low_complexity Low_complexity 1 21 0 285 336 39 0 chr3 200224027 200224131 -27300447 - MIR3 SINE MIR -18 190 83 387 248 31 18 chr3 200224251 200224390 -27300188 + MIR SINE MIR 4 146 -62 195 42 0 0 chr3 200226139 200226163 -27298415 + (TC)n Simple_repeat Simple_repeat 1 24 0 655 307 106 61 chr3 200226312 200226719 -27297859 - L2 LINE L2 -4 3309 2885 9946 169 22 15 chr3 200226863 200228666 -27295912 - Tigger2 DNA MER2_type -902 1816 1 659 272 37 0 chr3 200228841 200229032 -27295546 - LTR16C LTR ERVL -20 471 274 389 283 9 0 chr3 200229139 200229252 -27295326 - MER5C DNA MER1_type -172 152 39 214 340 9 28 chr3 200230603 200230709 -27293869 + L2 LINE L2 3167 3270 -2 414 0 0 0 chr3 200230934 200230980 -27293598 + (TA)n Simple_repeat Simple_repeat 2 47 0 243 0 0 0 chr3 200230980 200231007 -27293571 + (T)n Simple_repeat Simple_repeat 1 27 0 230 306 67 37 chr3 200232219 200232353 -27292225 + L2 LINE L2 3167 3304 -9 2031 251 80 39 chr3 200232640 200233489 -27291089 - L1PBa LINE L1 -5974 889 6 9129 201 8 11 chr3 200233500 200236083 -27288495 + L1P5 LINE L1 3217 5791 -360 13129 150 32 19 chr3 200236323 200238710 -27285868 + Tigger1 DNA MER2_type 1 2418 0 262 278 9 56 chr3 200240047 200240155 -27284423 + MER91C DNA MER1_type 4 106 -34 223 250 0 0 chr3 200240833 200240885 -27283693 + GA-rich Low_complexity Low_complexity 1 52 0 180 0 0 0 chr3 200241390 200241410 -27283168 + (A)n Simple_repeat Simple_repeat 1 20 0 287 289 105 43 chr3 200241664 200241968 -27282610 + L1ME LINE L1 5542 5864 -257 633 245 42 71 chr3 200242054 200242223 -27282355 - MIR SINE MIR -31 231 68 2216 86 0 43 chr3 200242223 200242548 -27282030 + AluY SINE Alu 1 311 0 633 245 42 71 chr3 200242548 200242590 -27281988 - MIR SINE MIR -194 68 26 23 33 0 0 chr3 200243018 200243048 -27281530 + AT_rich Low_complexity Low_complexity 1 30 0 1708 149 65 0 chr3 200243958 200244233 -27280345 + AluSx SINE Alu 1 293 -19 25 0 0 0 chr3 200244447 200244472 -27280106 + AT_rich Low_complexity Low_complexity 1 25 0 21 0 0 0 chr3 200245968 200245989 -27278589 + AT_rich Low_complexity Low_complexity 1 21 0 342 45 0 0 chr3 200246765 200246809 -27277769 + (TG)n Simple_repeat Simple_repeat 1 44 0 212 313 0 12 chr3 200247894 200247974 -27276604 + GA-rich Low_complexity Low_complexity 2 80 0 24 0 0 0 chr3 200248027 200248051 -27276527 + AT_rich Low_complexity Low_complexity 1 24 0 216 300 17 50 chr3 200248453 200248573 -27276005 + MIR SINE MIR 131 246 -16 27 49 0 0 chr3 200248831 200248872 -27275706 + AT_rich Low_complexity Low_complexity 1 41 0 26 50 0 0 chr3 200248984 200249024 -27275554 + AT_rich Low_complexity Low_complexity 1 40 0 318 237 32 21 chr3 200249141 200249234 -27275344 + MIR SINE MIR 150 243 -19 21 0 0 0 chr3 200250048 200250069 -27274509 + AT_rich Low_complexity Low_complexity 1 21 0 37 97 0 0 chr3 200250448 200250562 -27274016 + AT_rich Low_complexity Low_complexity 1 114 0 559 266 15 35 chr3 200251549 200251752 -27272826 + MER93a LTR ERV1 200 398 -4 318 354 28 7 chr3 200251987 200252131 -27272447 + MIR SINE MIR 22 168 -94 6453 139 40 28 chr3 200252253 200253139 -27271439 - Tigger3b DNA MER2_type -1797 1231 326 2051 145 7 0 chr3 200253139 200253435 -27271143 - AluSx SINE Alu -14 298 1 6453 139 40 28 chr3 200253435 200253764 -27270814 - Tigger3b DNA MER2_type -2702 326 2 339 249 75 52 chr3 200254078 200254251 -27270327 + L1MC4 LINE L1 7864 8040 -2 2147 140 19 8 chr3 200255121 200255492 -27269086 + L1PB1 LINE L1 5776 6150 -1 30 0 0 0 chr3 200258650 200258680 -27265898 + AT_rich Low_complexity Low_complexity 1 30 0 317 294 59 33 chr3 200258862 200259015 -27265563 + L1M LINE L1 5268 5424 -738 213 298 0 0 chr3 200259388 200259445 -27265133 + A-rich Low_complexity Low_complexity 5 61 0 28 48 0 0 chr3 200259579 200259621 -27264957 + AT_rich Low_complexity Low_complexity 1 42 0 360 301 29 15 chr3 200261318 200261454 -27263124 + CT-rich Low_complexity Low_complexity 3 140 0 353 315 185 11 chr3 200261814 200261992 -27262586 - MIR SINE MIR -13 249 41 692 295 45 0 chr3 200262435 200262635 -27261943 - MIR SINE MIR -38 224 16 184 305 85 12 chr3 200263923 200264005 -27260573 + MIR SINE MIR 98 185 -77 2168 123 0 0 chr3 200265431 200265739 -27258839 - AluSg SINE Alu 0 310 3 471 305 63 16 chr3 200267322 200267512 -27257066 - L1ME3 LINE L1 -130 6032 5834 1090 121 0 0 chr3 200267558 200267744 -27256834 - AluSp SINE Alu 0 322 137 475 267 107 17 chr3 200267750 200268395 -27256183 - L1ME3 LINE L1 -345 5817 5042 531 237 26 19 chr3 200268522 200268744 -27255834 - L1ME3 LINE L1 -1575 4571 4345 1488 284 107 28 chr3 200268774 200269689 -27254889 - L1ME3 LINE L1 -2255 3891 2837 2112 119 3 13 chr3 200269689 200269992 -27254586 + AluSx SINE Alu 1 300 -12 1488 284 107 28 chr3 200269992 200270402 -27254176 - L1ME3 LINE L1 -3309 2837 2461 1655 114 4 28 chr3 200270534 200270823 -27253755 - AluSx SINE Alu 0 317 35 1478 165 59 20 chr3 200271397 200271755 -27252823 - Charlie1 DNA MER1_type 0 2761 2390 2684 190 58 30 chr3 200271755 200271870 -27252708 - L1MA9 LINE L1 -24 6288 6178 342 0 0 0 chr3 200271870 200271908 -27252670 + (TG)n Simple_repeat Simple_repeat 1 38 0 2684 190 58 30 chr3 200271908 200272428 -27252150 - L1MA9 LINE L1 -134 6178 5635 248 248 83 55 chr3 200272658 200272767 -27251811 - MIR SINE MIR -33 229 118 1931 161 108 5 chr3 200272796 200273211 -27251367 - LTR46 LTR ERV1 -2 458 1 23 0 0 0 chr3 200273958 200273981 -27250597 + AT_rich Low_complexity Low_complexity 1 23 0 260 235 31 0 chr3 200275356 200275429 -27249149 + MIR SINE MIR 113 187 -75 24 0 0 0 chr3 200276663 200276687 -27247891 + AT_rich Low_complexity Low_complexity 1 24 0 597 290 90 13 chr3 200277523 200277899 -27246679 + L1ME LINE L1 3588 3992 -2154 284 264 18 61 chr3 200277917 200278080 -27246498 + L1ME LINE L1 4083 4238 -1908 23 33 0 0 chr3 200278169 200278199 -27246379 + AT_rich Low_complexity Low_complexity 1 30 0 944 195 83 6 chr3 200278226 200278508 -27246070 - MLT1A1 LTR MaLR 0 365 1 899 274 106 32 chr3 200278534 200279376 -27245202 + L1ME LINE L1 4542 5478 -684 659 263 56 89 chr3 200279456 200279814 -27244764 + L1ME LINE L1 5429 5774 -388 21 0 0 0 chr3 200280549 200280570 -27244008 + AT_rich Low_complexity Low_complexity 1 21 0 854 145 6 17 chr3 200280872 200281051 -27243527 + GA-rich Low_complexity Low_complexity 2 178 0 1222 172 0 21 chr3 200281237 200281470 -27243108 + MER30 DNA MER1_type 1 228 -2 187 31 62 0 chr3 200282200 200282232 -27242346 + T-rich Low_complexity Low_complexity 2 35 0 1169 221 33 15 chr3 200282234 200282506 -27242072 - AluJo SINE Alu -27 285 9 1947 101 3 80 chr3 200283731 200284068 -27240510 + AluSq SINE Alu 1 311 -2 26 64 0 0 chr3 200284545 200284592 -27239986 + AT_rich Low_complexity Low_complexity 1 47 0 542 281 76 17 chr3 200285596 200285834 -27238744 + MIR SINE MIR 7 258 -4 184 397 14 0 chr3 200287620 200287693 -27236885 - MIR SINE MIR -103 105 32 24 0 0 0 chr3 200287695 200287719 -27236859 + AT_rich Low_complexity Low_complexity 1 24 0 199 338 25 0 chr3 200287938 200288018 -27236560 - L2 LINE L2 -12 3301 3220 918 256 96 22 chr3 200288248 200288572 -27236006 - MLT1H1 LTR MaLR 0 555 208 334 226 354 6 chr3 200289215 200289379 -27235199 + MIR SINE MIR 2 222 -40 2216 79 18 0 chr3 200289725 200290002 -27234576 + AluSc SINE Alu 2 283 -26 26 30 0 0 chr3 200291122 200291155 -27233423 + AT_rich Low_complexity Low_complexity 1 33 0 5300 62 11 14 chr3 200291312 200292009 -27232569 + SVA Other Other 691 1385 -1 24 77 0 0 chr3 200292119 200292171 -27232407 + AT_rich Low_complexity Low_complexity 1 52 0 590 233 67 36 chr3 200293483 200293676 -27230902 + MIR SINE MIR 51 249 -13 349 305 31 8 chr3 200296161 200296289 -27228289 - MIR SINE MIR -31 231 101 206 328 164 9 chr3 200296291 200296407 -27228171 - MIR SINE MIR -101 161 28 203 217 0 29 chr3 200297451 200297520 -27227058 + (TTTA)n Simple_repeat Simple_repeat 2 68 0 187 133 40 27 chr3 200297625 200297700 -27226878 + (TA)n Simple_repeat Simple_repeat 1 76 0 297 0 0 0 chr3 200298840 200298873 -27225705 + (TG)n Simple_repeat Simple_repeat 1 33 0 404 316 0 14 chr3 200299004 200299143 -27225435 - MIR SINE MIR -41 221 85 37 69 0 0 chr3 200299599 200299671 -27224907 + AT_rich Low_complexity Low_complexity 1 72 0 378 0 0 0 chr3 200300578 200300620 -27223958 + (TG)n Simple_repeat Simple_repeat 2 43 0 22 35 0 0 chr3 200300705 200300734 -27223844 + AT_rich Low_complexity Low_complexity 1 29 0 25 31 0 0 chr3 200300835 200300867 -27223711 + AT_rich Low_complexity Low_complexity 1 32 0 299 302 159 6 chr3 200302383 200302565 -27222013 - LTR33A LTR ERVL 0 523 314 267 254 84 99 chr3 200302593 200302806 -27221772 - LTR33A LTR ERVL -300 223 14 35 41 0 0 chr3 200303269 200303318 -27221260 + AT_rich Low_complexity Low_complexity 1 49 0 188 350 210 0 chr3 200303874 200303974 -27220604 + L2 LINE L2 3151 3271 -1 292 196 60 15 chr3 200304020 200304153 -27220425 + (TTATA)n Simple_repeat Simple_repeat 3 141 0 2210 105 3 3 chr3 200304637 200304943 -27219635 + AluSq SINE Alu 1 306 -7 453 65 16 0 chr3 200305641 200305703 -27218875 - MADE1 DNA Mariner -17 63 1 22 0 0 0 chr3 200306131 200306153 -27218425 + AT_rich Low_complexity Low_complexity 1 22 0 260 206 59 0 chr3 200306203 200306271 -27218307 - L1MC/D LINE L1 -2001 5807 5736 2165 99 3 3 chr3 200306909 200307203 -27217375 + AluSc SINE Alu 1 294 -15 480 270 96 0 chr3 200307553 200307731 -27216847 - MER117 DNA MER1_type -1 196 2 307 213 8 8 chr3 200309529 200309651 -27214927 + (TA)n Simple_repeat Simple_repeat 2 123 0 408 20 0 0 chr3 200309716 200309765 -27214813 + (CA)n Simple_repeat Simple_repeat 2 50 0 23 54 0 0 chr3 200310954 200310991 -27213587 + AT_rich Low_complexity Low_complexity 1 37 0 1780 199 42 22 chr3 200311204 200311568 -27213010 + MLT2D LTR ERVL 1 375 -39 393 109 0 0 chr3 200311568 200311632 -27212946 + (CA)n Simple_repeat Simple_repeat 1 64 0 1780 199 42 22 chr3 200311632 200311673 -27212905 + MLT2D LTR ERVL 375 414 0 23 68 0 0 chr3 200311810 200311854 -27212724 + AT_rich Low_complexity Low_complexity 1 44 0 21 0 0 0 chr3 200312086 200312107 -27212471 + AT_rich Low_complexity Low_complexity 1 21 0 25 51 0 0 chr3 200313159 200313198 -27211380 + AT_rich Low_complexity Low_complexity 1 39 0 446 279 37 66 chr3 200313413 200313657 -27210921 - L2 LINE L2 0 3313 3077 1923 246 34 22 chr3 200315330 200315831 -27208747 - LTR40a LTR ERVL 0 519 13 12997 58 4 12 chr3 200317624 200320107 -27204471 + L1PA5 LINE L1 3685 6146 -8 192 135 0 0 chr3 200321237 200321274 -27203304 + (GA)n Simple_repeat Simple_repeat 2 38 0 313 176 19 0 chr3 200321416 200321524 -27203054 + (TA)n Simple_repeat Simple_repeat 1 110 0 302 204 0 92 chr3 200321526 200321624 -27202954 + L1MC4 LINE L1 6615 6703 -1339 1908 213 18 15 chr3 200324489 200324884 -27199694 - MSTD LTR MaLR 0 396 1 250 213 0 33 chr3 200326270 200326331 -27198247 - MLT1J LTR MaLR -337 174 116 768 196 58 20 chr3 200326678 200326871 -27197707 + MER3 DNA MER1_type 2 155 -54 2439 272 85 44 chr3 200326910 200327890 -27196688 - L2 LINE L2 -506 2808 1789 213 39 0 0 chr3 200328275 200328301 -27196277 + (CAAAA)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr3 200329363 200329387 -27195191 + AT_rich Low_complexity Low_complexity 1 24 0 724 197 0 0 chr3 200329387 200329514 -27195064 + FLAM_A SINE Alu 1 127 -6 2692 182 16 40 chr3 200330367 200331332 -27193246 - L1M2 LINE L1 -519 6855 5910 2275 169 9 0 chr3 200331404 200331836 -27192742 - L1M2 LINE L1 -1305 5903 5468 6455 70 17 47 chr3 200331836 200332819 -27191759 - SVA Other Other 0 1386 433 1112 43 0 12 chr3 200332836 200332997 -27191581 - SVA Other Other -520 866 708 4339 193 54 10 chr3 200382997 200384168 -27140410 + L1 LINE L1 3544 4793 -1353 1175 209 9 0 chr3 200384168 200384393 -27140185 - AluJo SINE Alu -85 227 1 1580 241 17 15 chr3 200384394 200384797 -27139781 - L1M2 LINE L1 -3370 3838 3435 1205 250 155 15 chr3 200384807 200385228 -27139350 - L1M2 LINE L1 -5565 1644 950 3207 124 7 17 chr3 200385232 200385772 -27138806 + L1MA4A LINE L1 5764 6298 -5 1245 264 82 24 chr3 200385809 200386026 -27138552 - L1MC4a LINE L1 -962 6846 6596 314 96 0 19 chr3 200386026 200386078 -27138500 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 1245 264 82 24 chr3 200386078 200386239 -27138339 - L1MC4a LINE L1 -1212 6596 6446 674 256 13 42 chr3 200386246 200386484 -27138094 - L1MC4a LINE L1 -1748 6060 5830 480 306 124 46 chr3 200386492 200386887 -27137691 - LTR16A LTR ERVL -7 443 18 697 158 71 0 chr3 200386949 200387076 -27137502 - MER3 DNA MER1_type 0 209 74 311 283 33 46 chr3 200387991 200388143 -27136435 + MER103 DNA DNA 14 163 -3 302 213 16 0 chr3 200388943 200389004 -27135574 - MER94 DNA DNA -45 89 28 1522 223 43 5 chr3 200389126 200389502 -27135076 + MLT1B LTR MaLR 1 390 0 183 114 0 0 chr3 200390372 200390407 -27134171 + (A)n Simple_repeat Simple_repeat 1 35 0 387 56 0 0 chr3 200390410 200390464 -27134114 + (CA)n Simple_repeat Simple_repeat 1 54 0 3260 201 39 27 chr3 200392800 200393537 -27131041 - L1MB7 LINE L1 -16 6168 5423 1770 188 67 17 chr3 200393539 200393955 -27130623 - L1MB7 LINE L1 -1062 5084 4648 258 32 0 0 chr3 200394295 200394326 -27130252 + (TG)n Simple_repeat Simple_repeat 2 32 0 189 0 0 0 chr3 200395448 200395469 -27129109 + (T)n Simple_repeat Simple_repeat 1 21 0 404 297 18 124 chr3 200396594 200396877 -27127701 - MIR SINE MIR -6 256 4 27 0 0 0 chr3 200396921 200396948 -27127630 + AT_rich Low_complexity Low_complexity 1 27 0 26 0 0 0 chr3 200396985 200397011 -27127567 + AT_rich Low_complexity Low_complexity 1 26 0 240 261 80 0 chr3 200397944 200398032 -27126546 - HAL1b LINE L1 -8 1340 1246 183 129 0 0 chr3 200398074 200398105 -27126473 + (CA)n Simple_repeat Simple_repeat 2 32 0 374 238 48 0 chr3 200398506 200398590 -27125988 - MIR3 SINE MIR -54 154 67 339 310 165 0 chr3 200398698 200398856 -27125722 - MIR SINE MIR 0 262 79 2109 95 0 0 chr3 200399528 200399823 -27124755 - L1PA7 LINE L1 0 6154 5860 2027 96 4 0 chr3 200399839 200400110 -27124468 - AluSp SINE Alu -8 305 34 1455 245 46 18 chr3 200400199 200400652 -27123926 - MLT1C LTR MaLR 0 467 2 270 235 15 44 chr3 200403093 200403229 -27121349 + (TA)n Simple_repeat Simple_repeat 1 132 0 1407 217 54 23 chr3 200403773 200404165 -27120413 - LTR52 LTR ERVL -14 407 4 279 0 0 0 chr3 200404901 200404932 -27119646 + (TG)n Simple_repeat Simple_repeat 2 32 0 676 218 0 8 chr3 200405018 200405151 -27119427 + FLAM_A SINE Alu 1 132 -1 196 407 0 0 chr3 200405300 200405381 -27119197 - MIR SINE MIR -66 142 62 861 217 12 0 chr3 200406442 200406608 -27117970 - FAM SINE Alu -6 169 2 260 303 11 0 chr3 200406668 200406757 -27117821 - L1MC4 LINE L1 -1339 6703 6614 32 43 0 0 chr3 200406757 200406803 -27117775 + AT_rich Low_complexity Low_complexity 1 46 0 333 0 0 0 chr3 200406815 200406852 -27117726 + (TG)n Simple_repeat Simple_repeat 2 38 0 1925 136 7 10 chr3 200406861 200407162 -27117416 - AluSx SINE Alu -12 300 1 237 314 100 71 chr3 200407371 200407581 -27116997 + MIR SINE MIR 47 262 0 1652 176 35 7 chr3 200408095 200408419 -27116159 + AluJo SINE Alu 3 312 0 474 286 109 41 chr3 200411681 200412167 -27112411 - HAL1 LINE L1 -78 2429 1911 693 279 111 7 chr3 200412206 200412486 -27112092 - HAL1 LINE L1 -685 1822 1514 2814 124 2 33 chr3 200412534 200412603 -27111975 - L1PB1 LINE L1 -300 5855 5785 330 26 0 0 chr3 200412603 200412642 -27111936 + (TG)n Simple_repeat Simple_repeat 2 40 0 2814 124 2 33 chr3 200412642 200412659 -27111919 - L1PB1 LINE L1 -370 5785 5769 7247 46 2 1 chr3 200412659 200414341 -27110237 - L1PA5 LINE L1 0 6154 4472 2814 124 2 33 chr3 200414341 200414756 -27109822 - L1PB1 LINE L1 -386 5769 5367 262 183 49 37 chr3 200414802 200414884 -27109694 + (CTTAT)n Simple_repeat Simple_repeat 5 87 0 194 119 48 0 chr3 200415303 200415345 -27109233 + (TCTCTG)n Simple_repeat Simple_repeat 5 48 0 24 53 0 0 chr3 200417060 200417098 -27107480 + AT_rich Low_complexity Low_complexity 1 38 0 275 276 35 62 chr3 200417117 200417262 -27107316 - MIR SINE MIR -57 205 65 15579 28 3 0 chr3 200417662 200420278 -27104300 - L1PA3 LINE L1 0 6155 3523 273 29 0 0 chr3 200420355 200420389 -27104189 + (TG)n Simple_repeat Simple_repeat 2 35 0 2995 184 38 10 chr3 200420423 200421006 -27103572 - MER7C DNA MER2_type -3 599 1 401 276 5 49 chr3 200421006 200421191 -27103387 + (TATATG)n Simple_repeat Simple_repeat 2 178 0 330 283 0 48 chr3 200421136 200421281 -27103297 + (CATATA)n Simple_repeat Simple_repeat 3 140 0 * 207 139 0 0 chr3 200421289 200421325 -27103253 + (TG)n Simple_repeat Simple_repeat 2 37 0 201 121 0 0 chr3 200421412 200421445 -27103133 + (TG)n Simple_repeat Simple_repeat 2 34 0 25 31 0 0 chr3 200422066 200422098 -27102480 + AT_rich Low_complexity Low_complexity 1 32 0 284 318 56 56 chr3 200422336 200422531 -27102047 + MIR3 SINE MIR 12 206 -2 1550 69 0 5 chr3 200423071 200423275 -27101303 - AluY SINE Alu -24 287 85 1955 112 42 7 chr3 200423335 200423621 -27100957 + AluSq SINE Alu 1 296 -17 360 320 96 36 chr3 200423844 200424094 -27100484 - L3 LINE CR1 -8 1569 1305 258 251 114 48 chr3 200424132 200424299 -27100279 - MLT1L LTR MaLR -1 614 437 377 325 179 31 chr3 200424563 200424948 -27099630 - L3 LINE CR1 -295 1282 841 2708 253 44 36 chr3 200424956 200426064 -27098514 - L1ME2 LINE L1 -9 6224 5127 1899 139 32 23 chr3 200426064 200426373 -27098205 + AluSx SINE Alu 1 312 0 2708 253 44 36 chr3 200426373 200426390 -27098188 - L1ME2 LINE L1 -1106 5127 5112 1582 171 25 4 chr3 200426390 200426664 -27097914 + AluJb SINE Alu 1 280 -32 414 0 0 0 chr3 200426666 200426712 -27097866 + (TAAA)n Simple_repeat Simple_repeat 2 47 0 2708 253 44 36 chr3 200426712 200427280 -27097298 - L1ME2 LINE L1 -1121 5112 4526 1741 286 94 32 chr3 200427264 200428823 -27095755 - L1ME2 LINE L1 -3664 2551 885 * 1856 167 3 0 chr3 200428823 200429123 -27095455 + AluSx SINE Alu 1 301 -11 1741 286 94 32 chr3 200429123 200429286 -27095292 - L1ME2 LINE L1 -5330 885 733 1600 215 131 78 chr3 200429326 200430209 -27094369 + LTR1B LTR ERV1 1 1020 0 350 302 31 26 chr3 200430286 200430478 -27094100 - L1ME2 LINE L1 -5915 481 289 269 317 0 0 chr3 200430672 200430754 -27093824 - L3 LINE CR1 -741 836 755 501 306 13 69 chr3 200430875 200431107 -27093471 + MIR SINE MIR 14 232 -30 1026 140 6 39 chr3 200431317 200431496 -27093082 - AluSg/x SINE Alu -3 309 137 2345 44 0 7 chr3 200431714 200432007 -27092571 + L1PA4 LINE L1 5865 6155 0 21 0 0 0 chr3 200432007 200432028 -27092550 + AT_rich Low_complexity Low_complexity 1 21 0 183 389 7 40 chr3 200432233 200432382 -27092196 - L3 LINE CR1 -1067 510 367 830 174 6 29 chr3 200434379 200434551 -27090027 - L1M4 LINE L1 -554 5630 5463 23 33 0 0 chr3 200434745 200434775 -27089803 + AT_rich Low_complexity Low_complexity 1 30 0 1046 189 31 16 chr3 200434835 200435089 -27089489 - L1MA4 LINE L1 -4 6296 6039 1584 155 11 7 chr3 200435089 200435367 -27089211 - L1MA7 LINE L1 -3 6288 6004 189 0 0 0 chr3 200435383 200435404 -27089174 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 310 114 29 0 chr3 200436537 200436607 -27087971 + T-rich Low_complexity Low_complexity 4 75 0 386 241 84 103 chr3 200436759 200436962 -27087616 - L3 LINE CR1 -931 646 448 1128 210 51 0 chr3 200437286 200437562 -27087016 + L1MA4 LINE L1 6010 6299 -1 382 236 127 52 chr3 200437566 200437900 -27086678 - LTR48B LTR ERV1 -35 722 226 810 264 48 17 chr3 200437984 200438279 -27086299 - L1MC5 LINE L1 -409 7552 7249 3449 211 31 14 chr3 200438360 200439075 -27085503 + MER44D DNA MER2_type 1 599 -6 584 224 118 30 chr3 200439078 200439315 -27085263 - L1MC5 LINE L1 -764 7197 6940 237 200 150 40 chr3 200439606 200439706 -27084872 - MIR SINE MIR -26 236 126 21 0 0 0 chr3 200441062 200441083 -27083495 + AT_rich Low_complexity Low_complexity 1 21 0 505 226 110 135 chr3 200442245 200442683 -27081895 - MER34C LTR ERV1 -125 460 34 956 245 114 70 chr3 200443079 200443552 -27081026 + MLT1F1 LTR MaLR 74 567 0 810 290 12 4 chr3 200443680 200443939 -27080639 - MIR SINE MIR 0 262 2 198 211 0 0 chr3 200444754 200444792 -27079786 + MIR SINE MIR 112 149 -113 2620 7 0 0 chr3 200444816 200445103 -27079475 + AluYb8 SINE Alu 32 318 0 626 232 133 105 chr3 200445279 200445792 -27078786 - L1MC4 LINE L1 -13 8029 7503 1272 193 56 7 chr3 200446012 200446297 -27078281 + L1MA4A LINE L1 6002 6300 -3 3629 178 43 30 chr3 200446454 200447178 -27077400 - MER44D DNA MER2_type 0 605 1 2527 107 13 11 chr3 200448416 200448790 -27075788 + THE1C LTR MaLR 1 375 0 21 36 0 0 chr3 200448812 200448840 -27075738 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr3 200448907 200448932 -27075646 + (CAA)n Simple_repeat Simple_repeat 2 26 0 684 109 50 0 chr3 200449039 200449140 -27075438 - U6 snRNA snRNA 0 107 2 232 351 135 0 chr3 200449698 200449809 -27074769 + MIR3 SINE MIR 47 172 -36 198 0 0 0 chr3 200450137 200450159 -27074419 + (T)n Simple_repeat Simple_repeat 1 22 0 331 246 254 31 chr3 200450353 200450609 -27073969 - L1ME LINE L1 -462 5659 5347 2756 127 12 109 chr3 200450620 200451178 -27073400 - MER41C LTR ERV1 0 554 51 3282 86 2 15 chr3 200451180 200451643 -27072935 - MER41A LTR ERV1 -96 458 2 1631 166 86 18 chr3 200453235 200453561 -27071017 - MER7A DNA MER2_type 0 346 1 22 35 0 0 chr3 200453883 200453912 -27070666 + AT_rich Low_complexity Low_complexity 1 29 0 22 35 0 0 chr3 200454335 200454364 -27070214 + AT_rich Low_complexity Low_complexity 1 29 0 182 356 23 11 chr3 200455682 200455769 -27068809 - L2 LINE L2 0 3313 3226 304 297 0 76 chr3 200455973 200456091 -27068487 + MIR SINE MIR 16 124 -84 21 0 0 0 chr3 200456719 200456740 -27067838 + AT_rich Low_complexity Low_complexity 1 21 0 298 260 8 87 chr3 200457498 200457625 -27066953 - MIR SINE MIR -10 252 136 362 289 27 78 chr3 200457773 200458061 -27066517 - L2 LINE L2 -39 3274 2772 2185 108 0 10 chr3 200458691 200458996 -27065582 + AluSx SINE Alu 1 302 -10 1669 167 36 31 chr3 200459820 200460210 -27064368 + L1MA7 LINE L1 5893 6284 -7 26 64 0 0 chr3 200460213 200460260 -27064318 + AT_rich Low_complexity Low_complexity 1 47 0 328 246 133 95 chr3 200461840 200462104 -27062474 + HAL1 LINE L1 2231 2504 -3 423 303 42 14 chr3 200462275 200462417 -27062161 - L2 LINE L2 -4 3309 3164 261 334 109 52 chr3 200462737 200463389 -27061189 - L2 LINE L2 -556 2758 2070 1441 68 136 23 chr3 200464684 200464942 -27059636 - AluY SINE Alu 0 322 40 510 120 0 0 chr3 200464942 200465017 -27059561 + AluY SINE Alu 34 108 -203 386 138 0 0 chr3 200465017 200465082 -27059496 + AluY SINE Alu 71 135 -166 2111 98 10 0 chr3 200465082 200465377 -27059201 + AluY SINE Alu 1 298 -13 40 0 0 0 chr3 200465606 200465646 -27058932 + AT_rich Low_complexity Low_complexity 1 40 0 683 118 0 10 chr3 200465703 200465805 -27058773 - LTR1B LTR ERV1 -725 101 1 290 67 22 0 chr3 200466989 200467034 -27057544 + MADE1 DNA Mariner 4 49 -31 21 36 0 0 chr3 200467594 200467622 -27056956 + AT_rich Low_complexity Low_complexity 1 28 0 1540 195 3 31 chr3 200467628 200467938 -27056640 + AluJo SINE Alu 5 306 0 24 67 0 0 chr3 200468715 200468760 -27055818 + AT_rich Low_complexity Low_complexity 1 45 0 32 0 0 0 chr3 200468815 200468847 -27055731 + AT_rich Low_complexity Low_complexity 1 32 0 210 162 0 0 chr3 200470785 200470822 -27053756 + T-rich Low_complexity Low_complexity 1 37 0 404 328 8 0 chr3 200470831 200470950 -27053628 - MIR SINE MIR -141 121 2 40 73 0 0 chr3 200471138 200471220 -27053358 + AT_rich Low_complexity Low_complexity 1 82 0 705 268 5 16 chr3 200473060 200473250 -27051328 + MER5A DNA MER1_type 2 189 0 664 331 97 15 chr3 200473494 200473868 -27050710 - L2 LINE L2 -147 3166 2766 3915 138 31 26 chr3 200474303 200474820 -27049758 - MER67C LTR ERV1 0 710 188 216 0 0 0 chr3 200474820 200474844 -27049734 + (TA)n Simple_repeat Simple_repeat 2 25 0 3915 138 31 26 chr3 200474844 200475013 -27049565 - MER67C LTR ERV1 -522 188 21 7464 33 12 36 chr3 200475058 200476534 -27048044 - L1PA4 LINE L1 -1 6154 4695 22 35 0 0 chr3 200476535 200476564 -27048014 + AT_rich Low_complexity Low_complexity 1 29 0 368 361 32 50 chr3 200476727 200477065 -27047513 - L2 LINE L2 -681 2633 2302 1939 132 4 0 chr3 200477873 200478178 -27046400 + AluSx SINE Alu 1 306 0 189 286 107 24 chr3 200480005 200480089 -27044489 + L2 LINE L2 3218 3308 -5 362 379 63 3 chr3 200480349 200480634 -27043944 + L2 LINE L2 2448 2749 -565 321 89 0 0 chr3 200480968 200481013 -27043565 + (CA)n Simple_repeat Simple_repeat 2 46 0 293 329 31 10 chr3 200481153 200481269 -27043309 + L2 LINE L2 2852 2963 -309 265 339 45 18 chr3 200481273 200481494 -27043084 + L1ME LINE L1 5501 5727 -394 23 86 0 0 chr3 200481654 200481712 -27042866 + AT_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr3 200481873 200481895 -27042683 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 200482040 200482061 -27042517 + AT_rich Low_complexity Low_complexity 1 21 0 180 219 0 0 chr3 200482075 200482116 -27042462 + (TA)n Simple_repeat Simple_repeat 1 41 0 243 0 0 0 chr3 200483150 200483177 -27041401 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 208 272 43 54 chr3 200483262 200483354 -27041224 - MIR SINE MIR -50 212 122 23 0 0 0 chr3 200483555 200483578 -27041000 + AT_rich Low_complexity Low_complexity 1 23 0 197 353 47 89 chr3 200483882 200484072 -27040506 + MIR SINE MIR 49 230 -32 22 0 0 0 chr3 200485852 200485874 -27038704 + AT_rich Low_complexity Low_complexity 1 22 0 189 269 39 64 chr3 200486224 200486302 -27038276 - MIR SINE MIR -50 212 137 225 204 68 0 chr3 200486529 200486573 -27038005 + HAL1 LINE L1 625 671 -1836 7804 12 2 0 chr3 200487643 200488975 -27035603 - L1PA2 LINE L1 -2 6153 4821 4942 21 0 0 chr3 200488975 200489557 -27035021 + L1PA2 LINE L1 4224 4805 -1341 24 32 0 0 chr3 200490431 200490462 -27034116 + AT_rich Low_complexity Low_complexity 1 31 0 219 88 0 0 chr3 200490618 200490652 -27033926 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 5706 155 11 43 chr3 200490652 200492704 -27031874 - L1PB1 LINE L1 -5 6146 4125 973 246 57 39 chr3 200492915 200493249 -27031329 - MER2 DNA MER2_type -3 341 2 523 248 170 0 chr3 200493274 200493415 -27031163 - MER5A DNA MER1_type -15 174 10 315 0 0 0 chr3 200493463 200493498 -27031080 + (CA)n Simple_repeat Simple_repeat 1 35 0 2199 115 0 10 chr3 200493723 200494036 -27030542 - AluSx SINE Alu -2 310 1 21 82 0 0 chr3 200495172 200495221 -27029357 + AT_rich Low_complexity Low_complexity 1 49 0 487 360 36 36 chr3 200495468 200495743 -27028835 - L2 LINE L2 0 3272 2998 861 212 6 0 chr3 200496318 200496488 -27028090 + MER45A DNA AcHobo 1 171 -7 982 246 96 70 chr3 200497088 200497763 -27026815 - HAL1 LINE L1 0 2507 1815 372 336 32 23 chr3 200497753 200497973 -27026605 - HAL1 LINE L1 -1654 853 632 * 1761 164 0 4 chr3 200498050 200498331 -27026247 - AluSx SINE Alu -30 282 3 951 305 108 18 chr3 200498379 200498815 -27025763 - HAL1 LINE L1 -2029 478 4 186 43 0 0 chr3 200500104 200500127 -27024451 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1672 168 0 25 chr3 200500512 200500797 -27023781 - AluJo SINE Alu -24 288 11 1719 176 7 4 chr3 200500896 200501169 -27023409 - AluJo SINE Alu -38 274 1 2429 72 7 0 chr3 200501178 200501484 -27023094 - AluY SINE Alu -3 308 1 24 67 0 0 chr3 200502111 200502156 -27022422 + AT_rich Low_complexity Low_complexity 1 45 0 486 309 21 11 chr3 200502825 200503016 -27021562 + MLT1K LTR MaLR 396 588 0 21 57 0 0 chr3 200503618 200503653 -27020925 + AT_rich Low_complexity Low_complexity 1 35 0 207 146 0 0 chr3 200504021 200504062 -27020516 + (TC)n Simple_repeat Simple_repeat 2 42 0 584 269 233 14 chr3 200505456 200505976 -27018602 - L1MEd LINE L1 -3383 2746 2113 323 290 86 103 chr3 200506241 200506589 -27017989 - L1MEd LINE L1 -5775 344 3 960 311 92 33 chr3 200506661 200507149 -27017429 - LTR33 LTR ERVL -2 519 3 1203 277 66 11 chr3 200508395 200508865 -27015713 - L1MC4 LINE L1 -143 7899 7404 1860 221 60 97 chr3 200509080 200509319 -27015259 - L1MC4 LINE L1 -638 7404 7158 1367 184 78 14 chr3 200509319 200509601 -27014977 - AluJo SINE Alu -12 300 1 1860 221 60 97 chr3 200509601 200510159 -27014419 - L1MC4 LINE L1 -884 7158 6636 228 350 0 15 chr3 200510171 200510308 -27014270 + (CATATA)n Simple_repeat Simple_repeat 3 137 0 * 296 242 34 28 chr3 200510218 200510396 -27014182 + (TA)n Simple_repeat Simple_repeat 2 180 0 268 231 13 15 chr3 200510433 200510520 -27014058 - L1MC4 LINE L1 -1462 6542 6448 477 283 110 97 chr3 200510861 200511405 -27013173 + L1MEd LINE L1 692 1242 -4877 326 276 200 31 chr3 200511662 200511887 -27012691 - L1ME4a LINE L1 -189 5932 5670 24 0 0 0 chr3 200512003 200512027 -27012551 + AT_rich Low_complexity Low_complexity 1 24 0 287 242 0 0 chr3 200512651 200512713 -27011865 - LTR30 LTR ERV1 -108 614 553 1706 162 308 16 chr3 200512715 200513209 -27011369 - pTR5 LTR ERV1 -406 2032 1395 237 250 0 0 chr3 200513209 200513261 -27011317 - LTR30 LTR ERV1 -670 52 1 422 103 15 0 chr3 200513261 200513329 -27011249 - pTR5 LTR ERV1 -1696 742 674 1901 154 68 27 chr3 200513646 200514055 -27010523 + L1MC2 LINE L1 5910 6335 -9 207 369 87 10 chr3 200514950 200515053 -27009525 + L2 LINE L2 3153 3263 -9 22 70 0 0 chr3 200515116 200515159 -27009419 + AT_rich Low_complexity Low_complexity 1 43 0 315 0 0 0 chr3 200515493 200515528 -27009050 + (GA)n Simple_repeat Simple_repeat 1 35 0 1516 132 0 25 chr3 200515692 200515927 -27008651 - AluSq SINE Alu -84 229 1 22 35 0 0 chr3 200515941 200515970 -27008608 + AT_rich Low_complexity Low_complexity 1 29 0 1007 105 0 0 chr3 200516099 200516232 -27008346 + AluSg/x SINE Alu 167 299 -13 1416 47 0 0 chr3 200516892 200517061 -27007517 + AluY SINE Alu 131 299 -12 2093 118 3 0 chr3 200517265 200517554 -27007024 - AluSg1 SINE Alu -11 298 9 771 296 14 0 chr3 200517711 200517931 -27006647 - MIR SINE MIR -25 237 15 200 143 24 0 chr3 200519499 200519541 -27005037 + (CCTA)n Simple_repeat Simple_repeat 2 44 0 273 324 148 7 chr3 200521494 200521636 -27002942 + MIR SINE MIR 52 213 -49 896 177 0 0 chr3 200521833 200521997 -27002581 - L1MA7 LINE L1 -370 5921 5758 257 177 48 0 chr3 200522000 200522062 -27002516 + L1MA7 LINE L1 5956 6020 -271 907 202 27 5 chr3 200522070 200522293 -27002285 + L1MA7 LINE L1 6064 6291 0 22 0 0 0 chr3 200522882 200522904 -27001674 + AT_rich Low_complexity Low_complexity 1 22 0 2165 100 33 0 chr3 200522995 200523296 -27001282 + AluY SINE Alu 1 311 0 25 0 0 0 chr3 200523804 200523829 -27000749 + AT_rich Low_complexity Low_complexity 1 25 0 33 80 0 0 chr3 200525346 200525421 -26999157 + AT_rich Low_complexity Low_complexity 1 75 0 1660 120 11 11 chr3 200525685 200525951 -26998627 - L1P5 LINE L1 -488 5666 5401 464 342 174 6 chr3 200525951 200526290 -26998288 + L3 LINE CR1 674 1069 -508 671 202 0 0 chr3 200526328 200526452 -26998126 - L1ME1 LINE L1 -7 6159 6036 * 1075 230 32 4 chr3 200526449 200526701 -26997877 - L1M1 LINE L1 -7290 275 17 216 0 0 0 chr3 200526816 200526840 -26997738 + (CA)n Simple_repeat Simple_repeat 2 25 0 23 0 0 0 chr3 200526861 200526884 -26997694 + AT_rich Low_complexity Low_complexity 1 23 0 1476 205 0 20 chr3 200527521 200527814 -26996764 - AluJo SINE Alu -25 287 1 192 97 0 0 chr3 200527817 200527848 -26996730 + (TTG)n Simple_repeat Simple_repeat 2 32 0 206 301 87 48 chr3 200528054 200528157 -26996421 - L2 LINE L2 -15 3298 3192 226 248 69 50 chr3 200532698 200532799 -26991779 - L1ME4a LINE L1 -28 6093 5991 333 202 12 24 chr3 200532927 200533011 -26991567 + L1MC4 LINE L1 7960 8042 0 279 0 0 0 chr3 200533127 200533158 -26991420 + (TG)n Simple_repeat Simple_repeat 2 32 0 1393 276 91 2 chr3 200533248 200533711 -26990867 + L1ME2 LINE L1 5486 5989 -175 243 354 0 0 chr3 200535105 200535232 -26989346 + T-rich Low_complexity Low_complexity 1 127 0 231 150 0 0 chr3 200535596 200535636 -26988942 + MADE1 DNA Mariner 1 40 -40 314 243 19 78 chr3 200536847 200536950 -26987628 + MIR SINE MIR 58 154 -108 713 188 7 7 chr3 200536960 200537098 -26987480 + MLT1A2 LTR MaLR 1 138 -227 1859 183 32 29 chr3 200537098 200537656 -26986922 - MLT2A2 LTR ERVL 0 554 1 846 249 4 46 chr3 200537656 200537896 -26986682 + MLT1A2 LTR MaLR 145 374 0 1184 255 131 14 chr3 200538535 200538970 -26985608 + L2 LINE L2 2392 2877 -437 397 310 70 52 chr3 200538979 200539250 -26985328 + L2 LINE L2 3033 3308 -5 21 0 0 0 chr3 200541088 200541109 -26983469 + AT_rich Low_complexity Low_complexity 1 21 0 461 326 92 26 chr3 200541710 200541983 -26982595 + MLT1K LTR MaLR 40 330 -258 242 311 123 8 chr3 200542002 200542124 -26982454 + MLT1L LTR MaLR 422 557 -58 2256 84 0 28 chr3 200542166 200542486 -26982092 - AluY SINE Alu 0 311 1 44 70 0 0 chr3 200542989 200543075 -26981503 + AT_rich Low_complexity Low_complexity 1 86 0 248 291 13 0 chr3 200544468 200544547 -26980031 + (CATATA)n Simple_repeat Simple_repeat 1 80 0 250 267 106 44 chr3 200544863 200545043 -26979535 + L1ME4a LINE L1 5927 6117 -4 364 255 217 19 chr3 200545795 200546058 -26978520 - L1ME4a LINE L1 -4 6117 5803 655 307 107 6 chr3 200546736 200546865 -26977713 - HAL1 LINE L1 -604 1903 1788 180 0 0 0 chr3 200546865 200546885 -26977693 + (TA)n Simple_repeat Simple_repeat 2 21 0 655 307 107 6 chr3 200546885 200547074 -26977504 - HAL1 LINE L1 -719 1788 1553 434 365 57 29 chr3 200547201 200547269 -26977309 - HAL1 LINE L1 -2101 406 341 325 19 463 0 chr3 200547269 200547323 -26977255 - MADE1 DNA Mariner -1 79 1 434 365 57 29 chr3 200547323 200547638 -26976940 - HAL1 LINE L1 -2166 341 12 37 79 0 24 chr3 200548111 200548237 -26976341 + AT_rich Low_complexity Low_complexity 1 123 0 1742 172 3 20 chr3 200548355 200548651 -26975927 - AluJb SINE Alu -21 291 1 403 325 72 0 chr3 200548652 200548818 -26975760 - MIR SINE MIR -4 258 81 981 152 0 13 chr3 200548875 200549033 -26975545 - FRAM SINE Alu -22 154 1 267 303 106 23 chr3 200549620 200549752 -26974826 + MIR SINE MIR 113 255 -7 1566 166 15 6 chr3 200549776 200550101 -26974477 + L1M1 LINE L1 2271 2598 -4967 22 0 0 0 chr3 200550460 200550482 -26974096 + AT_rich Low_complexity Low_complexity 1 22 0 860 111 20 40 chr3 200550542 200550709 -26973869 + MLT1B LTR MaLR 12 171 -203 32 57 0 0 chr3 200551187 200551240 -26973338 + AT_rich Low_complexity Low_complexity 1 53 0 250 311 41 41 chr3 200552281 200552403 -26972175 - L2 LINE L2 0 3313 3192 839 275 12 25 chr3 200552408 200552648 -26971930 - MIR SINE MIR -21 241 5 489 263 12 56 chr3 200552948 200553342 -26971236 - MLT1K LTR MaLR -1 587 86 324 316 84 63 chr3 200553389 200553626 -26970952 - L2 LINE L2 -857 2457 2216 248 273 93 40 chr3 200553708 200553858 -26970720 - L2 LINE L2 -1282 2032 1875 1167 216 76 112 chr3 200553959 200554020 -26970558 + MLT2B1 LTR ERVL 1 63 -457 357 62 0 0 chr3 200554020 200554068 -26970510 + (TG)n Simple_repeat Simple_repeat 2 49 0 1167 216 76 112 chr3 200554068 200554533 -26970045 + MLT2B1 LTR ERVL 63 508 -12 510 174 215 0 chr3 200554542 200554663 -26969915 + MLT-int LTR MaLR 1461 1607 -128 5694 130 19 0 chr3 200554718 200556009 -26968569 - L1PA15 LINE L1 -2 6163 4856 520 153 23 84 chr3 200556023 200556154 -26968424 + MLT1B-int LTR MaLR 1607 1729 -6 642 237 71 11 chr3 200556159 200556326 -26968252 + MLT1B LTR MaLR 1 157 -233 635 46 11 0 chr3 200556326 200556413 -26968165 + (TC)n Simple_repeat Simple_repeat 1 88 0 642 237 71 11 chr3 200556413 200556540 -26968038 + MLT1B LTR MaLR 157 379 -11 229 328 101 25 chr3 200556570 200556689 -26967889 + MIR SINE MIR 131 258 -4 848 134 8 0 chr3 200556946 200557073 -26967505 + FRAM SINE Alu 37 164 -12 235 250 160 14 chr3 200557133 200557277 -26967301 + MLT1B LTR MaLR 370 534 -8 216 0 0 0 chr3 200557961 200557985 -26966593 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 2194 101 0 3 chr3 200559219 200559515 -26965063 - AluSq SINE Alu -18 295 1 2593 153 7 12 chr3 200559668 200560094 -26964484 - MSTB LTR MaLR -2 424 1 227 224 66 13 chr3 200560307 200560383 -26964195 + MER116 DNA Mariner 1 80 0 2182 123 0 0 chr3 200560631 200560933 -26963645 + AluSq SINE Alu 7 308 -5 2157 133 8 65 chr3 200561473 200561645 -26962933 - THE1C LTR MaLR 0 375 195 2271 52 7 0 chr3 200561645 200561933 -26962645 - L1PA3 LINE L1 -3 6152 5863 2157 133 8 65 chr3 200561933 200562158 -26962420 - THE1C LTR MaLR -180 195 1 275 328 193 0 chr3 200562342 200562513 -26962065 - MIR SINE MIR 0 262 59 537 289 159 0 chr3 200562550 200562751 -26961827 + MIR SINE MIR 30 262 0 1804 192 10 52 chr3 200563027 200563434 -26961144 + MLT1B LTR MaLR 1 390 0 265 227 68 34 chr3 200563447 200563535 -26961043 - MIR SINE MIR -109 153 63 1250 221 29 16 chr3 200563751 200564058 -26960520 + AluJo SINE Alu 1 311 -1 24 0 0 0 chr3 200564192 200564216 -26960362 + AT_rich Low_complexity Low_complexity 1 24 0 744 223 31 31 chr3 200565047 200565240 -26959338 - MER3 DNA MER1_type 0 209 17 247 315 0 33 chr3 200566707 200566799 -26957779 - MER5B DNA MER1_type 0 178 90 260 246 49 107 chr3 200567308 200567430 -26957148 - LTR67 LTR ERVL -15 542 428 21 0 0 0 chr3 200567770 200567791 -26956787 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr3 200569332 200569374 -26955204 + AT_rich Low_complexity Low_complexity 1 42 0 3131 164 11 55 chr3 200569422 200570062 -26954516 - LTR9 LTR ERV1 0 612 1 2421 133 32 0 chr3 200570248 200570624 -26953954 - MSTC LTR MaLR 0 428 41 3722 141 19 0 chr3 200570632 200571226 -26953352 - MER39B LTR ERV1 -48 605 1 283 71 95 0 chr3 200571226 200571267 -26953311 - MSTC LTR MaLR -383 45 1 542 360 81 27 chr3 200571842 200572074 -26952504 + L3 LINE CR1 859 1077 -500 2853 13 0 0 chr3 200572074 200572389 -26952189 - AluYb8 SINE Alu -3 315 1 542 360 81 27 chr3 200572389 200572675 -26951903 + L3 LINE CR1 1077 1405 -172 1679 204 96 5 chr3 200573266 200573693 -26950885 + MLT1C LTR MaLR 1 466 -1 28 29 0 0 chr3 200573982 200574017 -26950561 + AT_rich Low_complexity Low_complexity 1 35 0 565 239 26 103 chr3 200574940 200575174 -26949404 + MER20 DNA MER1_type 4 219 0 1481 180 174 14 chr3 200575306 200575721 -26948857 - LTR10A LTR ERV1 -61 548 13 191 305 85 0 chr3 200676042 200676101 -26848477 + L2 LINE L2 3226 3289 -24 2108 103 27 7 chr3 200676450 200676742 -26847836 + AluSq SINE Alu 3 300 -13 3315 85 27 11 chr3 200677813 200678262 -26846316 - L1PA13 LINE L1 -1 6162 5707 677 225 24 19 chr3 200679018 200679231 -26845347 - L1M4 LINE L1 -1315 4831 4618 234 311 68 53 chr3 200680031 200680163 -26844415 + MIR3 SINE MIR 52 185 -23 1762 156 7 0 chr3 200680528 200680844 -26843734 + AluJb SINE Alu 1 318 0 194 268 0 0 chr3 200680936 200680977 -26843601 + MIR SINE MIR 81 121 -87 993 280 43 9 chr3 200681804 200682133 -26842445 - L2 LINE L2 -1046 2268 1929 24 85 0 0 chr3 200682336 200682395 -26842183 + AT_rich Low_complexity Low_complexity 1 59 0 210 200 44 0 chr3 200682400 200682445 -26842133 + L2 LINE L2 3226 3272 0 1126 192 21 0 chr3 200683408 200683642 -26840936 + AluJb SINE Alu 64 302 -10 2176 155 53 11 chr3 200683766 200684140 -26840438 + MLT1B LTR MaLR 1 390 0 331 309 83 18 chr3 200684194 200684411 -26840167 + MLT1I LTR MaLR 1 231 -178 209 182 0 0 chr3 200788461 200788494 -26736084 + (CA)n Simple_repeat Simple_repeat 2 34 0 231 36 0 0 chr3 200788577 200788605 -26735973 + (TG)n Simple_repeat Simple_repeat 1 28 0 324 240 13 0 chr3 200788644 200788719 -26735859 - MER117 DNA MER1_type -115 82 7 2164 120 3 0 chr3 200788797 200789106 -26735472 + AluSx SINE Alu 1 310 -2 2064 147 64 43 chr3 200789773 200790196 -26734382 + MSTB1 LTR MaLR 1 432 0 24 32 0 0 chr3 200791070 200791101 -26733477 + AT_rich Low_complexity Low_complexity 1 31 0 2489 51 0 0 chr3 200791700 200791994 -26732584 - AluY SINE Alu -2 309 16 21 36 0 0 chr3 200792465 200792493 -26732085 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 200792620 200792643 -26731935 + AT_rich Low_complexity Low_complexity 1 23 0 336 235 62 0 chr3 200792819 200792900 -26731678 - MIR SINE MIR -58 204 119 448 294 34 104 chr3 200793631 200794015 -26730563 + L2 LINE L2 2953 3309 -4 347 322 23 23 chr3 200794432 200794606 -26729972 - L1ME3A LINE L1 -4 6166 5993 2449 63 0 0 chr3 200795000 200795301 -26729277 - AluY SINE Alu -10 301 1 654 238 137 16 chr3 200795677 200795925 -26728653 - L1ME3A LINE L1 -314 5856 5579 599 287 103 84 chr3 200795936 200796341 -26728237 - MER110 LTR ERV1 -1 490 93 313 323 133 28 chr3 200796589 200796837 -26727741 - L1ME3A LINE L1 -772 5374 5101 492 258 59 27 chr3 200797053 200797274 -26727304 - L1ME3A LINE L1 -1302 4844 4617 200 348 110 8 chr3 200797489 200797607 -26726971 - MIR3 SINE MIR -21 187 58 429 351 42 56 chr3 200797777 200798259 -26726319 - L2 LINE L2 -12 3260 2800 348 316 146 35 chr3 200798768 200799056 -26725522 - L1MC4 LINE L1 -188 7854 7535 242 227 15 15 chr3 200799078 200799144 -26725434 - L1MC5 LINE L1 -566 7395 7330 294 274 36 0 chr3 200799387 200799471 -26725107 - MLT1I LTR MaLR -6 403 317 497 304 27 22 chr3 200799543 200799727 -26724851 - MLT1I LTR MaLR -194 215 31 333 77 0 0 chr3 200799809 200799861 -26724717 - L1PA16 LINE L1 -17 6149 6098 204 253 101 25 chr3 200800739 200800818 -26723760 + MIR SINE MIR 100 184 -78 34 42 0 0 chr3 200800818 200800866 -26723712 + AT_rich Low_complexity Low_complexity 1 48 0 1115 221 64 71 chr3 200801939 200802332 -26722246 - MLT1B LTR MaLR 0 390 1 1751 196 104 71 chr3 200802432 200803024 -26721554 + L1MB8 LINE L1 5565 6177 -1 311 272 98 0 chr3 200803401 200803493 -26721085 + MIR SINE MIR 47 147 -115 871 228 32 11 chr3 200805167 200805356 -26719222 + MLT1A1 LTR MaLR 173 365 0 7073 54 7 0 chr3 200806257 200807307 -26717271 - L1PA7 LINE L1 -2 6152 5096 1522 74 0 0 chr3 200807307 200807509 -26717069 + L1PA7 LINE L1 4897 5098 -1048 260 312 75 19 chr3 200807647 200807785 -26716793 - MIR3 SINE MIR -67 141 15 2021 133 10 7 chr3 200808113 200808422 -26716156 + AluSx SINE Alu 1 310 -2 288 342 17 8 chr3 200808476 200808593 -26715985 - L2 LINE L2 0 3313 3196 360 134 67 0 chr3 200808667 200808801 -26715777 + (TA)n Simple_repeat Simple_repeat 2 144 0 342 317 94 46 chr3 200808945 200809373 -26715205 - L2 LINE L2 -179 3134 2658 335 169 0 91 chr3 200809702 200809779 -26714799 - AluJ/FLAM SINE Alu -226 76 7 1854 171 3 0 chr3 200809957 200810266 -26714312 + AluJb SINE Alu 1 310 -2 1231 122 0 21 chr3 200810351 200810540 -26714038 - AluSg/x SINE Alu -7 305 121 243 0 0 0 chr3 200810743 200810770 -26713808 + (T)n Simple_repeat Simple_repeat 1 27 0 251 134 45 10 chr3 200811244 200811424 -26713154 + AluJo SINE Alu 55 319 0 466 136 23 11 chr3 200811677 200811765 -26712813 + MER20 DNA MER1_type 5 93 -126 334 0 0 0 chr3 200811896 200811939 -26712639 + L1PA2 LINE L1 6111 6153 -2 311 253 89 0 chr3 200812127 200812206 -26712372 + L2 LINE L2 2686 2771 -543 1752 202 34 3 chr3 200812269 200812621 -26711957 - MLT1A1 LTR MaLR -2 363 1 26 0 0 0 chr3 200812790 200812816 -26711762 + AT_rich Low_complexity Low_complexity 1 26 0 463 298 109 13 chr3 200813054 200813560 -26711018 + L1MEd LINE L1 1131 1709 -781 398 295 71 76 chr3 200813895 200814288 -26710290 + L1MEd LINE L1 2183 2573 -3556 324 371 23 23 chr3 200814623 200814755 -26709823 + MIR3 SINE MIR 28 159 -49 190 222 0 0 chr3 200815317 200815353 -26709225 + L2 LINE L2 3266 3301 -12 190 128 0 26 chr3 200815900 200815939 -26708639 - MIR SINE MIR -124 138 101 27 29 0 0 chr3 200817451 200817485 -26707093 + AT_rich Low_complexity Low_complexity 1 34 0 830 283 103 4 chr3 200818199 200818432 -26706146 + MIR SINE MIR 7 262 0 21 0 0 0 chr3 200818806 200818827 -26705751 + AT_rich Low_complexity Low_complexity 1 21 0 710 271 93 106 chr3 200818906 200819304 -26705274 + LTR16C LTR ERVL 97 489 -2 21 0 0 0 chr3 200820745 200820766 -26703812 + AT_rich Low_complexity Low_complexity 1 21 0 2725 128 21 0 chr3 200822033 200822454 -26702124 + MER57B LTR ERV1 1 430 -4 339 85 0 0 chr3 200823072 200823119 -26701459 + (TA)n Simple_repeat Simple_repeat 1 47 0 24 0 0 0 chr3 200823382 200823406 -26701172 + AT_rich Low_complexity Low_complexity 1 24 0 399 245 92 18 chr3 200823852 200824015 -26700563 + MIR SINE MIR 85 259 -3 228 231 15 31 chr3 200824100 200824165 -26700413 + MIR SINE MIR 156 219 -43 29 0 0 0 chr3 200824635 200824664 -26699914 + AT_rich Low_complexity Low_complexity 1 29 0 1952 211 101 33 chr3 200824804 200825407 -26699171 - LTR48B LTR ERV1 0 644 1 1490 86 9 14 chr3 200825504 200825725 -26698853 + L1PA10 LINE L1 5939 6158 -10 2235 124 25 25 chr3 200825851 200826215 -26698363 - THE1B LTR MaLR 0 364 1 10942 105 10 14 chr3 200826215 200826926 -26697652 - THE1B-int LTR MaLR 0 1580 867 2333 88 0 10 chr3 200826926 200827231 -26697347 + AluY SINE Alu 1 302 -9 10942 105 10 14 chr3 200827231 200828105 -26696473 - THE1B-int LTR MaLR -713 867 2 2024 124 51 25 chr3 200828106 200828461 -26696117 - THE1B LTR MaLR 0 364 1 21 36 0 0 chr3 200828936 200828964 -26695614 + AT_rich Low_complexity Low_complexity 1 28 0 2297 154 86 22 chr3 200829076 200829530 -26695048 - LTR44 LTR ERV1 -36 483 1 243 0 0 0 chr3 200830370 200830397 -26694181 + (T)n Simple_repeat Simple_repeat 1 27 0 2080 129 3 7 chr3 200830897 200831200 -26693378 - AluSx SINE Alu -10 302 1 339 189 38 57 chr3 200831924 200832030 -26692548 + U13 snRNA snRNA 1 104 0 247 273 68 23 chr3 200832292 200832380 -26692198 - L2 LINE L2 -1 3312 3221 1283 291 121 7 chr3 200832588 200833028 -26691550 - L2 LINE L2 -1020 2294 1805 3355 146 28 2 chr3 200833038 200833578 -26691000 + MER41C LTR ERV1 1 554 0 201 74 0 0 chr3 200834083 200834110 -26690468 + (CA)n Simple_repeat Simple_repeat 2 28 0 394 319 216 0 chr3 200834175 200834360 -26690218 + MIR SINE MIR 31 255 -7 1663 201 22 30 chr3 200835063 200835431 -26689147 - MLT1A1 LTR MaLR 0 365 1 9807 172 24 20 chr3 200835537 200838113 -26686465 - L1MA4 LINE L1 -4 6296 3732 252 0 0 0 chr3 200838113 200838141 -26686437 + (TTTG)n Simple_repeat Simple_repeat 2 29 0 9807 172 24 20 chr3 200838141 200838315 -26686263 - L1MA4 LINE L1 -2568 3732 3560 273 29 0 0 chr3 200838315 200838349 -26686229 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 9807 172 24 20 chr3 200838349 200838776 -26685802 - L1MA4 LINE L1 -2740 3560 3095 22 0 0 0 chr3 200839020 200839042 -26685536 + AT_rich Low_complexity Low_complexity 1 22 0 192 250 0 23 chr3 200839660 200839704 -26684874 + L2 LINE L2 3230 3272 -41 21 36 0 0 chr3 200839848 200839876 -26684702 + AT_rich Low_complexity Low_complexity 1 28 0 2205 86 0 0 chr3 200840819 200841098 -26683480 + AluSc SINE Alu 1 279 -30 270 356 106 0 chr3 200841184 200841316 -26683262 - MIR SINE MIR -78 130 2 364 275 11 11 chr3 200841375 200841466 -26683112 - MIR3 SINE MIR -15 193 103 1116 76 23 6 chr3 200842256 200842428 -26682150 + (GAAA)n Simple_repeat Simple_repeat 3 177 0 245 309 0 0 chr3 200843990 200844058 -26680520 - MIR SINE MIR 0 262 195 302 328 43 0 chr3 200844732 200844848 -26679730 - MARNA DNA Mariner -359 227 107 814 268 54 17 chr3 200845093 200845332 -26679246 - MIR SINE MIR 0 262 15 216 171 0 40 chr3 200845480 200845632 -26678946 + (TTAAA)n Simple_repeat Simple_repeat 5 150 0 57 28 0 0 chr3 200845632 200845703 -26678875 + AT_rich Low_complexity Low_complexity 1 71 0 22 0 0 0 chr3 200846064 200846086 -26678492 + AT_rich Low_complexity Low_complexity 1 22 0 307 249 93 58 chr3 200848800 200849005 -26675573 - HAL1b LINE L1 -11 1337 1126 669 260 47 61 chr3 200849027 200849317 -26675261 - HAL1b LINE L1 -328 1020 727 188 35 35 0 chr3 200849317 200849346 -26675232 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2068 79 0 18 chr3 200849350 200849630 -26674948 - AluY SINE Alu -35 276 2 669 260 47 61 chr3 200849630 200849742 -26674836 - HAL1b LINE L1 -624 724 619 2213 114 7 0 chr3 200852150 200852448 -26672130 + AluSc SINE Alu 1 300 -9 32 26 0 0 chr3 200852469 200852508 -26672070 + AT_rich Low_complexity Low_complexity 1 39 0 360 0 0 0 chr3 200852546 200852586 -26671992 + (TG)n Simple_repeat Simple_repeat 2 41 0 3610 46 0 0 chr3 200853482 200853919 -26670659 + L1PA5 LINE L1 5683 6119 -35 2197 88 24 9 chr3 200853920 200854316 -26670262 - LTR7 LTR ERV1 -2 448 1 273 49 0 0 chr3 200854316 200854357 -26670221 + L1PA6 LINE L1 6114 6154 0 414 323 25 30 chr3 200855585 200855786 -26668792 - MIR SINE MIR -6 256 57 2032 118 3 3 chr3 200855899 200856203 -26668375 + AluSc SINE Alu 1 304 -5 353 293 48 48 chr3 200857407 200857677 -26666901 + L1MEd LINE L1 907 1176 -4943 25 51 0 0 chr3 200858219 200858258 -26666320 + AT_rich Low_complexity Low_complexity 1 39 0 24 0 0 0 chr3 200858291 200858315 -26666263 + AT_rich Low_complexity Low_complexity 1 24 0 22 0 0 0 chr3 200859553 200859575 -26665003 + AT_rich Low_complexity Low_complexity 1 22 0 1612 166 54 4 chr3 200859580 200859699 -26664879 + AluJo SINE Alu 1 113 -199 186 43 0 0 chr3 200859699 200859722 -26664856 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1612 166 54 4 chr3 200859722 200859879 -26664699 + AluJo SINE Alu 113 291 -21 234 0 0 0 chr3 200860518 200860544 -26664034 + (TG)n Simple_repeat Simple_repeat 2 27 0 722 214 119 30 chr3 200860696 200860897 -26663681 - MLT2D LTR ERVL -195 219 1 403 306 94 6 chr3 200861778 200861948 -26662630 - MIR SINE MIR -21 241 57 242 299 167 7 chr3 200862094 200862238 -26662340 - MARNA DNA Mariner -287 299 133 2185 182 49 2 chr3 200862534 200862941 -26661637 + MSTB LTR MaLR 1 426 0 2617 209 52 34 chr3 200863287 200863942 -26660636 - MER76 LTR ERV 0 688 22 386 327 83 47 chr3 200863981 200864388 -26660190 + L1MEd LINE L1 1092 1513 -4903 362 187 11 0 chr3 200866083 200866174 -26658404 + (TA)n Simple_repeat Simple_repeat 1 92 0 322 280 123 46 chr3 200866361 200866622 -26657956 - L1 LINE L1 -1834 4312 4032 1432 233 71 87 chr3 200867806 200868399 -26656179 - MER77 LTR ERV1 -3 602 54 1905 126 14 0 chr3 200868618 200868895 -26655683 - AluSc SINE Alu -28 281 1 21 0 0 0 chr3 200870578 200870599 -26653979 + AT_rich Low_complexity Low_complexity 1 21 0 1384 227 75 16 chr3 200871599 200871973 -26652605 - MSTD LTR MaLR 0 396 1 327 25 0 0 chr3 200872296 200872336 -26652242 + (CA)n Simple_repeat Simple_repeat 1 40 0 33 0 0 0 chr3 200872592 200872625 -26651953 + AT_rich Low_complexity Low_complexity 1 33 0 263 264 0 22 chr3 200872633 200872724 -26651854 + L1MC4 LINE L1 6614 6702 -1340 231 302 0 0 chr3 200872659 200872745 -26651833 - L1MC4 LINE L1 -1343 6699 6614 * 195 184 0 0 chr3 200872745 200872783 -26651795 + (TA)n Simple_repeat Simple_repeat 2 39 0 239 267 47 0 chr3 200872783 200872869 -26651709 + L1MC4 LINE L1 6614 6703 -1339 232 183 0 17 chr3 200872880 200872940 -26651638 + L1MEd LINE L1 2006 2064 -4362 252 247 165 10 chr3 200873056 200873153 -26651425 - L2 LINE L2 -1785 1529 1418 319 276 106 8 chr3 200873180 200873303 -26651275 - L2 LINE L2 -2004 1310 1176 299 185 74 25 chr3 200873321 200873402 -26651176 - MER39 LTR ERV1 0 707 623 1156 141 21 39 chr3 200873402 200873932 -26650646 - MER4A LTR ERV1 0 664 1 949 182 56 128 chr3 200873932 200873965 -26650613 - MER39 LTR ERV1 -81 626 592 251 27 0 27 chr3 200873965 200874002 -26650576 + (TTTG)n Simple_repeat Simple_repeat 2 37 0 2452 32 0 0 chr3 200874004 200874286 -26650292 - AluY SINE Alu -29 282 1 949 182 56 128 chr3 200874286 200874589 -26649989 - MER39 LTR ERV1 -116 591 138 2240 86 0 17 chr3 200874589 200874890 -26649688 - AluSq SINE Alu -17 296 1 949 182 56 128 chr3 200874890 200875019 -26649559 - MER39 LTR ERV1 -569 138 1 225 352 48 16 chr3 200875019 200875144 -26649434 - L2 LINE L2 -2158 1156 1028 1047 264 150 17 chr3 200875159 200875580 -26648998 - L2 LINE L2 -2244 1070 594 393 382 7 0 chr3 200875594 200875738 -26648840 - L2 LINE L2 -2860 454 310 1589 146 75 7 chr3 200876974 200877255 -26647323 + MER2 DNA MER2_type 1 300 -45 1103 143 34 0 chr3 200878452 200878627 -26645951 + MER2 DNA MER2_type 27 207 -138 1296 239 0 7 chr3 200880415 200880691 -26643887 + AluJo SINE Alu 3 276 -36 717 155 0 0 chr3 200880703 200880832 -26643746 + G-rich Low_complexity Low_complexity 5 133 0 1025 196 106 85 chr3 200881336 200881724 -26642854 - MSTD LTR MaLR 0 396 1 363 305 60 21 chr3 200882003 200882223 -26642355 - MIR3 SINE MIR -36 226 3 189 213 0 0 chr3 200882388 200882435 -26642143 + CT-rich Low_complexity Low_complexity 3 49 0 22 0 0 0 chr3 200883084 200883106 -26641472 + AT_rich Low_complexity Low_complexity 1 22 0 193 386 40 10 chr3 200883558 200883659 -26640919 - MIR SINE MIR -78 130 27 225 337 0 12 chr3 200884101 200884184 -26640394 - L2 LINE L2 -3 3310 3229 342 263 38 0 chr3 200884316 200884396 -26640182 - L2 LINE L2 -45 3268 3186 281 336 137 0 chr3 200885631 200885777 -26638801 - MER5A DNA MER1_type -14 175 10 830 214 82 0 chr3 200886163 200886345 -26638233 - MIR SINE MIR -59 203 7 745 337 127 5 chr3 200887570 200887971 -26636607 + L3 LINE CR1 842 1291 -286 3825 171 34 14 chr3 200888077 200888810 -26635768 + L1PB4 LINE L1 5402 6149 -7 397 199 7 27 chr3 200888901 200889047 -26635531 + (TATATG)n Simple_repeat Simple_repeat 2 144 0 202 365 135 0 chr3 200889179 200889349 -26635229 + L3 LINE CR1 1284 1476 -101 210 304 39 59 chr3 200889390 200889492 -26635086 + MIR SINE MIR 70 169 -93 288 263 83 77 chr3 200889671 200889827 -26634751 - L2 LINE L2 -46 3267 3111 29 47 0 0 chr3 200890370 200890413 -26634165 + AT_rich Low_complexity Low_complexity 1 43 0 188 274 257 9 chr3 200891125 200891238 -26633340 - L2 LINE L2 -21 3292 3152 2367 86 0 0 chr3 200891352 200891655 -26632923 - AluSg SINE Alu -7 303 1 189 184 26 0 chr3 200892309 200892347 -26632231 + MIR3 SINE MIR 157 195 -13 2144 188 68 29 chr3 200892798 200894126 -26630452 - L1MC2 LINE L1 -92 6252 4873 242 228 18 0 chr3 200894309 200894366 -26630212 + MIR SINE MIR 86 143 -119 2118 68 7 4 chr3 200894656 200894974 -26629604 + AluY SINE Alu 1 319 0 200 165 13 51 chr3 200895947 200896026 -26628552 + (TTTAA)n Simple_repeat Simple_repeat 1 76 0 457 285 145 34 chr3 200897594 200897829 -26626749 - MIR SINE MIR 0 262 2 180 367 13 13 chr3 200898243 200898322 -26626256 + MIR3 SINE MIR 94 172 -36 669 120 30 0 chr3 200899411 200899511 -26625067 + U6 snRNA snRNA 2 104 -3 23 33 0 0 chr3 200899511 200899541 -26625037 + AT_rich Low_complexity Low_complexity 1 30 0 1968 138 0 7 chr3 200900431 200900721 -26623857 + AluSx SINE Alu 12 299 -13 347 289 42 54 chr3 200901027 200901193 -26623385 - L2 LINE L2 0 3313 3150 183 379 23 23 chr3 200901422 200901509 -26623069 - L2 LINE L2 -623 2691 2605 265 84 30 5 chr3 200901510 200901559 -26623019 - MLT2C2 LTR ERVL -2 395 357 312 148 0 0 chr3 200901563 200901624 -26622954 + (TG)n Simple_repeat Simple_repeat 2 62 0 1781 205 30 30 chr3 200901625 200902029 -26622549 - MLT2C2 LTR ERVL -60 404 1 268 338 74 14 chr3 200902031 200902179 -26622399 - L2 LINE L2 -729 2585 2429 1043 220 107 54 chr3 200903261 200903611 -26620967 - MLT1C LTR MaLR 0 467 99 504 77 0 0 chr3 200903611 200903676 -26620902 - THE1B LTR MaLR 0 364 300 272 50 125 0 chr3 200903776 200903816 -26620762 - THE1C LTR MaLR -330 45 1 305 256 44 22 chr3 200903816 200903906 -26620672 - MLT1C LTR MaLR -405 100 9 1473 278 118 32 chr3 200903970 200904596 -26619982 + LTR50 LTR ERVL 1 680 -115 25 31 0 0 chr3 200906298 200906330 -26618248 + AT_rich Low_complexity Low_complexity 1 32 0 785 223 100 23 chr3 200906393 200906693 -26617885 + MER33 DNA MER1_type 1 323 -1 266 295 39 13 chr3 200907238 200907316 -26617262 - L2 LINE L2 0 3272 3193 739 289 46 0 chr3 200909018 200909215 -26615363 + MIR SINE MIR 57 262 0 557 284 60 41 chr3 200910321 200910539 -26614039 - MIR SINE MIR -4 258 37 2118 196 83 33 chr3 200910546 200911061 -26613517 - MER34 LTR ERV1 -1 541 1 2422 60 0 25 chr3 200911713 200912027 -26612551 + AluY SINE Alu 1 306 -5 190 93 23 23 chr3 200912060 200912103 -26612475 + (CA)n Simple_repeat Simple_repeat 2 44 0 282 228 10 40 chr3 200912104 200912205 -26612373 + (CATATA)n Simple_repeat Simple_repeat 3 100 0 41974 36 25 1 chr3 200912953 200917789 -26606789 - L1PA3 LINE L1 -217 5938 934 198 0 0 0 chr3 200917789 200917811 -26606767 + (GGA)n Simple_repeat Simple_repeat 1 22 0 41974 36 25 1 chr3 200917811 200918768 -26605810 - L1PA3 LINE L1 -5221 934 2 3446 125 36 41 chr3 200918775 200919119 -26605459 + Tigger3(Golem) DNA MER2_type 2392 2733 -296 1822 163 10 3 chr3 200919119 200919420 -26605158 - AluJb SINE Alu -9 303 1 3446 125 36 41 chr3 200919420 200919716 -26604862 + Tigger3(Golem) DNA MER2_type 2733 3029 0 194 128 0 77 chr3 200920217 200920256 -26604322 + L2 LINE L2 3272 3307 -6 22 0 0 0 chr3 200920942 200920964 -26603614 + AT_rich Low_complexity Low_complexity 1 22 0 266 326 0 0 chr3 200921304 200921393 -26603185 - MER117 DNA MER1_type -106 91 3 27 0 0 0 chr3 200922286 200922313 -26602265 + AT_rich Low_complexity Low_complexity 1 27 0 263 319 0 0 chr3 200922430 200922499 -26602079 + LTR67 LTR ERVL 132 200 -357 28 71 0 0 chr3 200922779 200922835 -26601743 + AT_rich Low_complexity Low_complexity 1 56 0 374 345 111 29 chr3 200923696 200924082 -26600496 - MLT1L LTR MaLR -11 604 187 2213 89 0 22 chr3 200924326 200924642 -26599936 - AluY SINE Alu -2 309 1 25 75 0 0 chr3 200924665 200924718 -26599860 + AT_rich Low_complexity Low_complexity 1 53 0 208 290 14 29 chr3 200924830 200924899 -26599679 + L2 LINE L2 3203 3270 -2 10806 158 40 37 chr3 200925750 200927888 -26596690 - Tigger2 DNA MER2_type -508 2210 66 212 0 36 0 chr3 200928160 200928188 -26596390 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 308 355 40 0 chr3 200928397 200928521 -26596057 - MIR3 SINE MIR -18 190 62 345 47 0 0 chr3 200929165 200929208 -26595370 + (TG)n Simple_repeat Simple_repeat 1 43 0 28 0 0 0 chr3 200930157 200930185 -26594393 + AT_rich Low_complexity Low_complexity 1 28 0 25 0 0 0 chr3 200930367 200930392 -26594186 + AT_rich Low_complexity Low_complexity 1 25 0 1824 230 19 2 chr3 200932086 200932538 -26592040 - MER89 LTR ERV1 0 559 1 2262 85 0 0 chr3 200934550 200934859 -26589719 + AluSx SINE Alu 1 309 0 265 271 98 25 chr3 200936294 200936416 -26588162 - MIR SINE MIR -62 146 16 434 260 44 120 chr3 200936643 200936893 -26587685 - MIR SINE MIR 0 262 32 1541 192 8 51 chr3 200937413 200937767 -26586811 - MER44D DNA MER2_type 0 609 1 25 0 0 0 chr3 200938264 200938289 -26586289 + AT_rich Low_complexity Low_complexity 1 25 0 1324 219 56 0 chr3 200938341 200938629 -26585949 - MER58B DNA MER1_type -26 315 12 199 293 106 65 chr3 200938674 200938797 -26585781 - MIR3 SINE MIR -46 162 35 * 269 247 108 11 chr3 200938774 200938867 -26585711 + MIR SINE MIR 90 191 -71 597 355 68 35 chr3 200939106 200939183 -26585395 - L2 LINE L2 -219 3053 2980 180 77 0 0 chr3 200939183 200939209 -26585369 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 597 355 68 35 chr3 200939209 200939636 -26584942 - L2 LINE L2 -292 2980 2532 216 358 21 47 chr3 200940664 200940854 -26583724 - L2 LINE L2 -955 2359 2175 348 356 163 15 chr3 200940889 200941349 -26583229 - L2 LINE L2 -1226 2088 1561 559 266 84 7 chr3 200941552 200941706 -26582872 - MLT1H LTR MaLR -383 166 1 21 0 0 0 chr3 200942635 200942656 -26581922 + AT_rich Low_complexity Low_complexity 1 21 0 22 56 0 0 chr3 200944693 200944729 -26579849 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 200944792 200944813 -26579765 + AT_rich Low_complexity Low_complexity 1 21 0 21 36 0 0 chr3 200945466 200945494 -26579084 + AT_rich Low_complexity Low_complexity 1 28 0 186 217 22 0 chr3 200946127 200946173 -26578405 - MIR SINE MIR -7 255 209 246 396 117 24 chr3 200946610 200946979 -26577599 + L2 LINE L2 2571 2973 -341 983 209 87 54 chr3 200947405 200947774 -26576804 - L1MC5 LINE L1 -51 7910 7530 843 241 30 5 chr3 200947785 200947984 -26576594 + MER20 DNA MER1_type 16 219 0 806 231 50 69 chr3 200947985 200948361 -26576217 - L1MC5 LINE L1 -457 7504 7136 224 341 51 67 chr3 200951375 200951525 -26573053 - MIR SINE MIR -58 150 18 207 0 0 0 chr3 200952143 200952166 -26572412 + (T)n Simple_repeat Simple_repeat 1 23 0 232 203 203 0 chr3 200952180 200952239 -26572339 - MIR SINE MIR -118 144 74 23 0 0 0 chr3 200954501 200954524 -26570054 + AT_rich Low_complexity Low_complexity 1 23 0 863 171 30 120 chr3 200954929 200955163 -26569415 + AluJo SINE Alu 87 299 -13 22 56 0 0 chr3 200956068 200956104 -26568474 + AT_rich Low_complexity Low_complexity 1 36 0 414 295 23 39 chr3 200956364 200956493 -26568085 - L2 LINE L2 0 3272 3146 374 286 30 42 chr3 200956670 200956838 -26567740 - MIR SINE MIR -1 261 96 369 0 0 0 chr3 200956906 200956947 -26567631 + (TA)n Simple_repeat Simple_repeat 2 42 0 213 175 0 0 chr3 200957078 200957118 -26567460 + (CATA)n Simple_repeat Simple_repeat 1 40 0 449 310 102 0 chr3 200957698 200957914 -26566664 + L2 LINE L2 2378 2615 -699 259 299 94 92 chr3 200957929 200958344 -26566234 - LTR33A LTR ERVL -44 479 64 296 382 15 0 chr3 200958739 200958870 -26565708 - L2 LINE L2 -215 3057 2925 189 175 0 0 chr3 200959571 200959611 -26564967 + A-rich Low_complexity Low_complexity 1 40 0 331 298 81 16 chr3 200960266 200960390 -26564188 + MER94 DNA DNA 2 133 -1 801 255 35 17 chr3 200960841 200961072 -26563506 + L1M3c LINE L1 904 1138 -5003 959 136 7 0 chr3 201011084 201011238 -26513340 + L1MA1 LINE L1 6148 6302 0 379 294 89 50 chr3 201011794 201012102 -26512476 - L1ME3A LINE L1 -153 6017 5703 2484 77 157 5 chr3 201012331 201012720 -26511858 + LTR7 LTR ERV1 1 448 -2 10889 89 29 5 chr3 201012722 201014289 -26510289 + HERVH LTR ERV1 1 1605 -6108 462 160 0 0 chr3 201014395 201014470 -26510108 + LTR38-int LTR ERV1 3124 3198 -3478 319 39 58 0 chr3 201014478 201014530 -26510048 + (AATTG)n Simple_repeat Simple_repeat 1 55 0 324 203 0 0 chr3 201014574 201014638 -26509940 + LTR38-int LTR ERV1 1381 1444 -342 192 151 14 55 chr3 201014841 201014914 -26509664 + (TATATG)n Simple_repeat Simple_repeat 6 75 0 32 57 0 0 chr3 201015678 201015731 -26508847 + AT_rich Low_complexity Low_complexity 1 53 0 809 251 70 37 chr3 201016162 201016531 -26508047 + L1MCa LINE L1 1258 1613 -4994 186 43 0 0 chr3 201016531 201016554 -26508024 + (GAA)n Simple_repeat Simple_repeat 2 24 0 809 251 70 37 chr3 201016554 201016853 -26507725 + L1MCa LINE L1 1613 2176 -4431 2421 127 72 5 chr3 201016873 201017274 -26507304 + MSTA LTR MaLR 1 428 0 3267 153 22 0 chr3 201017274 201017823 -26506755 + MSTA-int LTR MaLR 1 561 -1090 24 32 0 0 chr3 201018964 201018995 -26505583 + AT_rich Low_complexity Low_complexity 1 31 0 39 0 0 0 chr3 201019558 201019597 -26504981 + AT_rich Low_complexity Low_complexity 1 39 0 3169 96 15 0 chr3 201019616 201020074 -26504504 + L1PA13 LINE L1 5699 6163 0 21 36 0 0 chr3 201020697 201020725 -26503853 + AT_rich Low_complexity Low_complexity 1 28 0 191 114 29 0 chr3 201020745 201020780 -26503798 + (TTA)n Simple_repeat Simple_repeat 2 37 0 3800 184 17 8 chr3 201020812 201021056 -26503522 - L1 LINE L1 -1786 4360 4120 2550 108 6 0 chr3 201021056 201021409 -26503169 + THE1A LTR MaLR 1 355 0 3800 184 17 8 chr3 201021409 201021934 -26502644 - L1 LINE L1 -2026 4120 3584 3130 167 5 18 chr3 201021932 201022418 -26502160 + L1MA8 LINE L1 5304 5782 -509 * 369 0 0 0 chr3 201022418 201022459 -26502119 + (CA)n Simple_repeat Simple_repeat 2 42 0 3130 167 5 18 chr3 201022459 201022572 -26502006 + L1MA8 LINE L1 5782 5895 -396 1647 106 51 0 chr3 201022767 201023004 -26501574 + AluSg1 SINE Alu 54 302 -7 335 298 16 32 chr3 201023418 201023606 -26500972 + L1ME3A LINE L1 4962 5146 -1000 525 98 0 12 chr3 201023612 201023694 -26500884 + Alu SINE Alu 219 299 -12 453 275 74 9 chr3 201023695 201023924 -26500654 + L1ME3A LINE L1 5130 5373 -773 2178 218 78 14 chr3 201023972 201024546 -26500032 + L1ME3A LINE L1 5552 6162 -8 23 54 0 0 chr3 201024622 201024659 -26499919 + AT_rich Low_complexity Low_complexity 1 37 0 25 0 0 0 chr3 201024935 201024960 -26499618 + AT_rich Low_complexity Low_complexity 1 25 0 28 61 0 0 chr3 201025303 201025352 -26499226 + AT_rich Low_complexity Low_complexity 1 49 0 363 246 127 36 chr3 201025396 201025506 -26499072 - L2 LINE L2 -5 3308 3189 474 257 61 27 chr3 201025603 201025924 -26498654 - L1M1 LINE L1 -598 5566 5237 866 218 0 0 chr3 201026311 201026467 -26498111 + AluJb SINE Alu 134 289 -23 273 237 191 20 chr3 201026473 201026625 -26497953 - L1M4 LINE L1 -1404 4742 4565 302 303 46 0 chr3 201026639 201026748 -26497830 - L1M4 LINE L1 -3609 2537 2424 1455 174 11 4 chr3 201026989 201027264 -26497314 - L1MA6 LINE L1 -116 6184 5908 509 134 31 39 chr3 201027264 201027391 -26497187 + L1MA6 LINE L1 6166 6291 -9 22 0 0 0 chr3 201027410 201027432 -26497146 + AT_rich Low_complexity Low_complexity 1 22 0 2657 88 6 3 chr3 201027437 201027791 -26496787 + THE1A LTR MaLR 1 355 0 6434 103 1 0 chr3 201027791 201028658 -26495920 + THE1A-int LTR MaLR 1 868 -712 271 200 0 0 chr3 201029050 201029100 -26495478 + MLT1L LTR MaLR 179 228 -387 376 227 11 23 chr3 201029577 201029665 -26494913 + Tigger5 DNA MER2_type 2237 2323 0 292 301 11 0 chr3 201029803 201029896 -26494682 - MER94 DNA DNA -37 97 4 241 329 0 35 chr3 201029895 201029980 -26494598 + MER45C DNA AcHobo 1 82 -871 * 614 251 117 56 chr3 201030005 201030236 -26494342 + MER45C DNA AcHobo 704 948 -5 4646 135 161 18 chr3 201030540 201031451 -26493127 + pTR5 LTR ERV1 984 2025 -413 365 204 31 20 chr3 201031451 201031549 -26493029 + LTR30 LTR ERV1 544 642 -80 1507 87 3 6 chr3 201031549 201031774 -26492804 + pTR5 LTR ERV1 66 392 -2046 1136 176 68 14 chr3 201031774 201031995 -26492583 + MSTA LTR MaLR 196 428 0 2029 249 45 25 chr3 201032093 201033078 -26491500 + L1MCa LINE L1 2242 3249 -3177 678 321 63 59 chr3 201033081 201033813 -26490765 + L1PA15-16 LINE L1 0 734 -6114 653 323 22 59 chr3 201033875 201034472 -26490106 + L1PA15-16 LINE L1 797 1528 -5320 1226 262 49 8 chr3 201034505 201034944 -26489634 + L1PA15-16 LINE L1 1199 1573 -5275 2203 189 14 7 chr3 201036767 201037190 -26487388 - MSTB LTR MaLR 0 426 1 204 310 88 0 chr3 201037631 201037744 -26486834 + L2 LINE L2 2927 3049 -223 402 290 76 7 chr3 201037840 201037985 -26486593 + MIR SINE MIR 3 157 -105 3393 222 49 58 chr3 201038020 201039472 -26485106 + L1MCb LINE L1 1 1428 -4851 1590 132 4 11 chr3 201039573 201039838 -26484740 + HERVH LTR ERV1 2730 2992 -4721 * 6090 76 14 2 chr3 201039824 201040668 -26483910 + HERVH LTR ERV1 3140 3993 -3720 1401 71 0 0 chr3 201040670 201040853 -26483725 + HERVH LTR ERV1 4488 4670 -3043 * 3759 149 0 2 chr3 201040850 201041426 -26483152 + HERVH LTR ERV1 4575 5149 -2564 1427 116 19 0 chr3 201041427 201041643 -26482935 + HERVH LTR ERV1 5600 5819 -1894 * 2293 100 48 13 chr3 201041641 201042020 -26482558 + HERVH LTR ERV1 7322 7713 0 382 78 0 0 chr3 201042020 201042071 -26482507 + LTR7 LTR ERV1 1 51 -399 426 185 0 0 chr3 201042122 201042257 -26482321 + (TCTA)n Simple_repeat Simple_repeat 4 138 0 2194 95 0 0 chr3 201042604 201042925 -26481653 + AluSx SINE Alu 1 321 0 215 204 157 82 chr3 201045007 201045154 -26479424 + MIR SINE MIR 93 250 -12 201 277 34 92 chr3 201045583 201045702 -26478876 + MIR SINE MIR 82 193 -69 35 41 0 0 chr3 201046208 201046257 -26478321 + AT_rich Low_complexity Low_complexity 1 49 0 369 0 0 0 chr3 201046393 201046434 -26478144 + (TG)n Simple_repeat Simple_repeat 1 41 0 23 33 0 0 chr3 201046449 201046479 -26478099 + AT_rich Low_complexity Low_complexity 1 30 0 282 73 0 0 chr3 201046827 201046868 -26477710 + (TG)n Simple_repeat Simple_repeat 2 42 0 236 394 106 11 chr3 201046993 201047173 -26477405 + L2 LINE L2 2881 3077 -195 838 304 125 46 chr3 201047187 201047684 -26476894 - MLT1H LTR MaLR -2 547 12 236 357 21 64 chr3 201047769 201047909 -26476669 + L2 LINE L2 3139 3272 0 5713 202 26 2 chr3 201049057 201050287 -26474291 + L1 LINE L1 3710 4968 -1178 7121 37 51 17 chr3 201050561 201051484 -26473094 - L1PA4 LINE L1 -1 6154 5220 40976 53 26 7 chr3 201051587 201057620 -26466958 + L1PA3 LINE L1 4 6154 -1 409 315 106 56 chr3 201058069 201058681 -26465897 - L1M4 LINE L1 -832 5314 4672 2110 252 38 19 chr3 201058724 201059751 -26464827 - L1ME2 LINE L1 -211 5953 4912 524 165 312 77 chr3 201059752 201060092 -26464486 - L1ME2 LINE L1 -1305 4841 4422 * 546 295 36 12 chr3 201060090 201060341 -26464237 - L1MDb LINE L1 -5219 1190 934 282 214 114 0 chr3 201060346 201060416 -26464162 - MER2 DNA MER2_type 0 345 268 1188 163 14 14 chr3 201060445 201060654 -26463924 - MER2 DNA MER2_type -134 211 3 979 208 0 0 chr3 201061244 201061422 -26463156 - MLT1B LTR MaLR -2 388 211 630 0 0 0 chr3 201061428 201061498 -26463080 + (GA)n Simple_repeat Simple_repeat 1 70 0 203 222 22 0 chr3 201061679 201061724 -26462854 - L2 LINE L2 -5 3308 3263 202 288 0 0 chr3 201062091 201062150 -26462428 + MIR SINE MIR 186 244 -18 236 356 129 21 chr3 201062379 201062612 -26461966 - L2 LINE L2 -357 2957 2700 23 33 0 0 chr3 201062726 201062756 -26461822 + AT_rich Low_complexity Low_complexity 1 30 0 242 203 0 14 chr3 201062840 201062909 -26461669 + (TA)n Simple_repeat Simple_repeat 2 69 0 497 299 130 36 chr3 201064105 201064436 -26460142 + L1MEd LINE L1 1042 1403 -4969 1350 213 101 56 chr3 201064455 201064902 -26459676 + MLT1D LTR MaLR 39 505 0 318 212 10 0 chr3 201065042 201065117 -26459461 + L1M1 LINE L1 2883 3025 -4601 304 254 27 64 chr3 201065436 201065546 -26459032 + L1ME LINE L1 5666 5771 -399 2822 85 8 0 chr3 201065815 201066203 -26458375 + L1PA10 LINE L1 5768 6158 -10 23 0 0 0 chr3 201066333 201066356 -26458222 + AT_rich Low_complexity Low_complexity 1 23 0 2021 115 6 25 chr3 201066576 201066890 -26457688 + AluSg SINE Alu 1 308 -2 322 301 143 36 chr3 201067131 201067467 -26457111 + L1MEd LINE L1 2236 2628 -3884 32 43 0 0 chr3 201067738 201067784 -26456794 + AT_rich Low_complexity Low_complexity 1 46 0 2688 190 32 7 chr3 201068291 201068849 -26455729 - L1 LINE L1 -863 5283 4712 936 269 12 42 chr3 201068856 201069190 -26455388 - L1ME1 LINE L1 -4 6231 5908 613 261 106 5 chr3 201069194 201069382 -26455196 - MER58C DNA MER1_type 0 215 9 1642 254 43 21 chr3 201069393 201070231 -26454347 - L1ME1 LINE L1 -341 5894 5032 663 316 48 19 chr3 201070239 201070672 -26453906 - L1ME1 LINE L1 -4692 1704 1259 223 231 0 19 chr3 201071480 201071532 -26453046 + L2 LINE L2 3219 3269 -3 1818 198 17 8 chr3 201073752 201074111 -26450467 - MLT1A1 LTR MaLR 0 365 4 250 374 16 59 chr3 201074360 201074547 -26450031 - L2 LINE L2 -263 3050 2872 28 29 0 0 chr3 201075201 201075236 -26449342 + AT_rich Low_complexity Low_complexity 1 35 0 228 364 19 56 chr3 201076081 201076243 -26448335 - L3 LINE CR1 -20 1557 1402 23 33 0 0 chr3 201076834 201076864 -26447714 + AT_rich Low_complexity Low_complexity 1 30 0 358 306 35 21 chr3 201078442 201078586 -26445992 - MIR SINE MIR -78 184 39 302 243 43 0 chr3 201078850 201078920 -26445658 - MER90 LTR ERV1 -2 612 540 357 313 95 48 chr3 201080592 201081074 -26443504 + L1MEd LINE L1 2911 3415 -2967 24 77 0 0 chr3 201081151 201081203 -26443375 + AT_rich Low_complexity Low_complexity 1 52 0 623 223 34 11 chr3 201081689 201081864 -26442714 - L1M4 LINE L1 -1051 5095 4917 35 41 0 0 chr3 201082455 201082504 -26442074 + AT_rich Low_complexity Low_complexity 1 49 0 420 342 27 0 chr3 201083799 201083948 -26440630 - MIR SINE MIR -95 167 15 1774 237 64 7 chr3 201084038 201084104 -26440474 + L1ME3A LINE L1 5592 5653 -517 408 88 0 0 chr3 201084104 201084161 -26440417 + (TA)n Simple_repeat Simple_repeat 2 58 0 1774 237 64 7 chr3 201084161 201084584 -26439994 + L1ME3A LINE L1 5653 6111 -59 266 340 124 40 chr3 201085392 201085818 -26438760 + L2 LINE L2 1636 2097 -1217 335 347 32 16 chr3 201087778 201087902 -26436676 + L2 LINE L2 3137 3262 -10 246 279 0 15 chr3 201088751 201088819 -26435759 - MLT1H LTR MaLR -387 162 96 1576 341 80 20 chr3 201089643 201090885 -26433693 - L2 LINE L2 -2 3311 1986 292 298 0 12 chr3 201090929 201091013 -26433565 - LTR33 LTR ERVL -8 513 431 541 216 94 35 chr3 201091021 201091192 -26433386 - MSTD LTR MaLR 0 396 216 318 189 0 0 chr3 201091616 201091669 -26432909 + Tigger5 DNA MER2_type 2 54 -2269 434 227 0 11 chr3 201091680 201091768 -26432810 + Tigger5 DNA MER2_type 2237 2323 0 2099 116 51 25 chr3 201092388 201092742 -26431836 + THE1B LTR MaLR 1 363 -1 11173 102 2 17 chr3 201092743 201094346 -26430232 + THE1B-int LTR MaLR 1 1580 0 1539 114 92 37 chr3 201094346 201094618 -26429960 + THE1B LTR MaLR 1 287 -77 21 0 0 0 chr3 201095409 201095430 -26429148 + AT_rich Low_complexity Low_complexity 1 21 0 31 26 0 0 chr3 201095534 201095572 -26429006 + AT_rich Low_complexity Low_complexity 1 38 0 233 264 35 46 chr3 201095579 201095666 -26428912 + L2 LINE L2 3185 3270 -43 21 36 0 0 chr3 201095970 201095998 -26428580 + AT_rich Low_complexity Low_complexity 1 28 0 1995 156 24 16 chr3 201096539 201096911 -26427667 + THE1C LTR MaLR 1 375 0 464 332 67 5 chr3 201097411 201097604 -26426974 + MIR SINE MIR 40 244 -18 494 285 106 17 chr3 201097902 201098081 -26426497 - MIR SINE MIR 0 262 68 26 50 0 0 chr3 201098396 201098436 -26426142 + AT_rich Low_complexity Low_complexity 1 40 0 252 371 0 0 chr3 201098533 201098622 -26425956 - MIR3 SINE MIR -11 197 109 241 356 42 8 chr3 201098915 201099033 -26425545 - MLT1J LTR MaLR -313 198 77 258 370 22 29 chr3 201100262 201100400 -26424178 + MIR SINE MIR 32 168 -94 21 0 0 0 chr3 201102102 201102123 -26422455 + AT_rich Low_complexity Low_complexity 1 21 0 1830 261 71 14 chr3 201102271 201102769 -26421809 + MLT1F1 LTR MaLR 31 566 -1 240 281 190 50 chr3 201103151 201103272 -26421306 - L3 LINE CR1 -177 1400 1263 2332 74 3 3 chr3 201103323 201103622 -26420956 - AluY SINE Alu -12 299 1 261 146 0 0 chr3 201103627 201103675 -26420903 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 957 64 8 0 chr3 201103852 201103977 -26420601 - L1PA5 LINE L1 -8 6146 6021 3242 174 43 43 chr3 201104082 201104658 -26419920 + MER66B-int LTR ERV1 3256 3835 -2841 2290 60 0 7 chr3 201104658 201104967 -26419611 + AluY SINE Alu 1 307 0 3242 174 43 43 chr3 201104967 201105109 -26419469 + MER66B-int LTR ERV1 3834 3975 -2701 * 7495 130 11 5 chr3 201105090 201106198 -26418380 + MER66B-int LTR ERV1 5562 6675 -1 2763 174 12 4 chr3 201106199 201106681 -26417897 + MER66B LTR ERV1 1 486 0 23 68 0 0 chr3 201107958 201108002 -26416576 + AT_rich Low_complexity Low_complexity 1 44 0 23 33 0 0 chr3 201108364 201108394 -26416184 + AT_rich Low_complexity Low_complexity 1 30 0 1591 112 5 0 chr3 201108509 201108733 -26415845 + AluSc SINE Alu 1 225 -84 380 331 56 46 chr3 201108964 201109248 -26415330 + HAL1 LINE L1 1050 1336 -1171 203 265 88 0 chr3 201109282 201109350 -26415228 - L2 LINE L2 0 3313 3240 329 266 15 74 chr3 201109357 201109560 -26415018 + HAL1 LINE L1 1374 1564 -943 1877 125 144 6 chr3 201109853 201110173 -26414405 - THE1B LTR MaLR 0 364 1 189 254 91 18 chr3 201111837 201111892 -26412686 + L3 LINE CR1 304 362 -1215 2482 229 38 11 chr3 201112232 201112766 -26411812 - MER68 LTR ERV1 -14 548 1 695 81 0 30 chr3 201112782 201112881 -26411697 + L1PA6 LINE L1 3 98 -6048 * 34760 57 3 6 chr3 201112879 201115539 -26409039 + L1PA6 LINE L1 847 3488 -2666 8194 52 1 0 chr3 201115539 201116504 -26408074 - LTR5 LTR ERVK -3 966 1 34760 57 3 6 chr3 201116504 201118842 -26405736 + L1PA6 LINE L1 3488 5831 -323 10813 232 40 14 chr3 201118942 201122415 -26402163 + L1PA12 LINE L1 2819 6288 -1296 3055 194 67 9 chr3 201122424 201123151 -26401427 + L1MC3 LINE L1 6875 7647 -138 1686 157 66 33 chr3 201123151 201123514 -26401064 - THE1C LTR MaLR 0 375 1 3055 194 67 9 chr3 201123514 201123532 -26401046 + L1MC3 LINE L1 7647 7663 -122 1898 225 18 58 chr3 201123532 201124030 -26400548 + MLT2B1 LTR ERVL 1 478 -42 279 0 0 0 chr3 201124037 201124094 -26400484 + (CA)n Simple_repeat Simple_repeat 1 88 0 279 0 0 0 chr3 201124094 201124125 -26400453 + (CA)n Simple_repeat Simple_repeat 2 32 0 5329 140 20 1 chr3 201124182 201125766 -26398812 + L1PA15 LINE L1 4575 6158 -7 476 172 0 21 chr3 201125799 201125892 -26398686 + L1MC3 LINE L1 7695 7785 0 305 267 22 11 chr3 201125931 201126021 -26398557 + MIR SINE MIR 172 262 0 333 224 230 15 chr3 201126489 201126676 -26397902 + MIR SINE MIR 13 249 -13 569 312 87 13 chr3 201128375 201128606 -26395972 - MIR SINE MIR 0 262 15 594 294 50 10 chr3 201129494 201129695 -26394883 + MIR SINE MIR 5 213 -49 268 303 131 10 chr3 201129745 201129844 -26394734 + L2 LINE L2 3160 3270 -2 1555 204 35 30 chr3 201129898 201130270 -26394308 + MLT1A2 LTR MaLR 1 374 0 31 44 0 0 chr3 201131385 201131430 -26393148 + AT_rich Low_complexity Low_complexity 1 45 0 1310 235 153 27 chr3 201131451 201131889 -26392689 + MLT1D LTR MaLR 13 505 0 492 314 162 57 chr3 201132258 201132383 -26392195 - L2 LINE L2 0 3313 3203 22 70 0 0 chr3 201132383 201132426 -26392152 + AT_rich Low_complexity Low_complexity 1 43 0 492 314 162 57 chr3 201132426 201132932 -26391646 - L2 LINE L2 -110 3203 2552 2583 178 4 23 chr3 201132974 201133023 -26391555 - MER88 LTR ERVL 0 464 416 2034 119 27 41 chr3 201133023 201133392 -26391186 - THE1B LTR MaLR 0 364 1 2583 178 4 23 chr3 201133392 201133815 -26390763 - MER88 LTR ERVL -48 416 1 2691 309 102 6 chr3 201133818 201134912 -26389666 - L2 LINE L2 -830 2484 1287 2881 231 55 19 chr3 201134921 201135723 -26388855 - L1MC4a LINE L1 -382 7426 6596 210 71 0 0 chr3 201135763 201135791 -26388787 + (TA)n Simple_repeat Simple_repeat 1 28 0 483 99 0 0 chr3 201135799 201135870 -26388708 + L1P LINE L1 4474 4544 -1602 583 104 21 14 chr3 201135871 201136015 -26388563 + (TA)n Simple_repeat Simple_repeat 2 146 0 814 239 60 33 chr3 201136015 201136935 -26387643 - L1MC4 LINE L1 -1190 6618 5752 919 365 20 3 chr3 201137083 201137436 -26387142 + MLT1I LTR MaLR 41 399 -10 1265 238 38 51 chr3 201137499 201137894 -26386684 - MLT1B LTR MaLR 0 390 1 25 31 0 0 chr3 201138183 201138215 -26386363 + AT_rich Low_complexity Low_complexity 1 32 0 284 253 40 0 chr3 201138318 201138393 -26386185 + MIR SINE MIR 120 197 -65 34 72 0 0 chr3 201139142 201139211 -26385367 + AT_rich Low_complexity Low_complexity 1 69 0 676 252 43 70 chr3 201140042 201140929 -26383649 + L1MC4 LINE L1 6450 7476 -566 253 304 43 43 chr3 201141340 201141455 -26383123 + MIR SINE MIR 49 163 -99 2128 125 0 3 chr3 201141460 201141757 -26382821 - AluSx SINE Alu -14 298 3 3205 141 8 0 chr3 201141757 201142261 -26382317 - L1PA16 LINE L1 -162 6004 5497 769 86 26 0 chr3 201142258 201142374 -26382204 + L1PA16 LINE L1 5364 5482 -684 * 242 330 69 62 chr3 201143252 201143540 -26381038 + L1MB7 LINE L1 598 887 -5655 1106 253 91 12 chr3 201143590 201144153 -26380425 + L1MB7 LINE L1 894 1626 -4916 1309 269 61 13 chr3 201144311 201144629 -26379949 + L1MB7 LINE L1 1680 2028 -4618 6968 62 1 1 chr3 201144629 201146165 -26378413 + L1PA7 LINE L1 4618 6152 -2 1309 269 61 13 chr3 201146165 201146303 -26378275 + L1MB7 LINE L1 2028 2158 -4488 2610 234 48 16 chr3 201146477 201147448 -26377130 + L1MB7 LINE L1 5636 6646 -16 1129 241 100 57 chr3 201147453 201147823 -26376755 + MLT1D LTR MaLR 1 386 -119 1468 266 40 17 chr3 201147823 201147902 -26376676 + L1MD1 LINE L1 4770 4846 -1300 845 238 114 47 chr3 201147902 201148330 -26376248 - MSTB2 LTR MaLR 0 457 1 1468 266 40 17 chr3 201148330 201148768 -26375810 + L1MD1 LINE L1 4846 5299 -847 2526 193 10 63 chr3 201148871 201149473 -26375105 + L1MD1 LINE L1 5665 6234 -8 1356 297 92 20 chr3 201149491 201150297 -26374281 + L1ME3A LINE L1 5188 6054 -116 269 278 11 0 chr3 201150304 201150394 -26374184 + L1ME3A LINE L1 6080 6170 0 23 54 0 0 chr3 201150678 201150715 -26373863 + AT_rich Low_complexity Low_complexity 1 37 0 369 318 134 35 chr3 201150806 201151208 -26373370 + L1M4 LINE L1 3205 3646 -2500 318 313 65 41 chr3 201151244 201151490 -26373088 + L1M4 LINE L1 4353 4604 -1542 657 129 0 0 chr3 201151605 201151706 -26372872 - MER41A LTR ERV1 -86 468 368 3242 108 9 73 chr3 201151716 201152292 -26372286 - L1PB1 LINE L1 -1 6150 5612 196 51 26 26 chr3 201154168 201154207 -26370371 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 243 0 0 0 chr3 201155861 201155888 -26368690 + (TG)n Simple_repeat Simple_repeat 2 28 0 1761 133 7 4 chr3 201156023 201156389 -26368189 + AluSq SINE Alu 37 403 0 205 222 93 0 chr3 201156491 201156545 -26368033 + MIR3 SINE MIR 121 179 -29 2412 56 3 10 chr3 201156819 201157125 -26367453 - AluY SINE Alu -6 305 2 194 59 88 0 chr3 201157152 201157186 -26367392 + A-rich Low_complexity Low_complexity 5 41 0 23 33 0 0 chr3 201158382 201158412 -26366166 + AT_rich Low_complexity Low_complexity 1 30 0 2160 186 70 5 chr3 201159758 201160198 -26364380 - L1PA16 LINE L1 -8 6860 6392 11034 245 38 19 chr3 201160298 201163488 -26361090 - L1PA16 LINE L1 -1380 5468 2253 2099 216 19 62 chr3 201163488 201164067 -26360511 + MLT2B3 LTR ERVL 1 554 0 11034 245 38 19 chr3 201164067 201164885 -26359693 - L1PA16 LINE L1 -4595 2253 1452 331 266 36 61 chr3 201165981 201166085 -26358493 - L1PA16 LINE L1 -6597 241 136 1227 218 44 27 chr3 201166085 201166379 -26358199 + AluJo SINE Alu 1 299 -3 331 266 36 61 chr3 201166379 201166483 -26358095 - L1PA16 LINE L1 -6702 136 2 2152 92 3 36 chr3 201166890 201167196 -26357382 + AluSx SINE Alu 1 296 -16 27 49 0 0 chr3 201167200 201167241 -26357337 + AT_rich Low_complexity Low_complexity 1 41 0 26 0 0 0 chr3 201167266 201167292 -26357286 + AT_rich Low_complexity Low_complexity 1 26 0 23 54 0 0 chr3 201167867 201167904 -26356674 + AT_rich Low_complexity Low_complexity 1 37 0 354 290 38 25 chr3 201167938 201168131 -26356447 - MER34 LTR ERV1 -341 366 8 198 0 0 0 chr3 201168131 201168153 -26356425 + (CA)n Simple_repeat Simple_repeat 1 22 0 1732 170 3 10 chr3 201168312 201168600 -26355978 + AluJb SINE Alu 1 286 -26 2608 190 33 36 chr3 201168751 201169367 -26355211 - MER44D DNA MER2_type 0 605 2 1730 190 50 0 chr3 201169383 201169704 -26354874 + MLT1A1-int LTR MaLR 1399 1735 0 1143 188 36 32 chr3 201169704 201169954 -26354624 + MLT1A1 LTR MaLR 1 251 -114 22 0 0 0 chr3 201169982 201170004 -26354574 + AT_rich Low_complexity Low_complexity 1 22 0 8443 137 0 60 chr3 201170011 201170840 -26353738 - L1PA10 LINE L1 -4 6164 5287 1867 169 0 0 chr3 201170840 201171135 -26353443 - AluSx SINE Alu -17 295 1 8443 137 0 60 chr3 201171135 201172668 -26351910 - L1PA10 LINE L1 -881 5287 3884 12089 206 19 14 chr3 201172669 201174933 -26349645 + L1P LINE L1 1258 3510 -2636 209 57 29 0 chr3 201174933 201174968 -26349610 + (CAAA)n Simple_repeat Simple_repeat 2 37 0 12089 206 19 14 chr3 201174968 201175126 -26349452 + L1P LINE L1 3510 3695 -2451 198 0 0 0 chr3 201175126 201175148 -26349430 + (CAA)n Simple_repeat Simple_repeat 3 24 0 12089 206 19 14 chr3 201175148 201175223 -26349355 + L1P LINE L1 3695 3768 -2378 610 213 32 97 chr3 201175223 201175378 -26349200 + MLT1A1 LTR MaLR 247 365 0 684 189 53 0 chr3 201176007 201176139 -26348439 - MER5A DNA MER1_type -49 140 2 576 181 113 38 chr3 201176293 201176426 -26348152 + LTR40b LTR ERVL 320 462 0 207 0 0 0 chr3 201176633 201176656 -26347922 + (CA)n Simple_repeat Simple_repeat 2 24 0 24 0 0 0 chr3 201177449 201177473 -26347105 + AT_rich Low_complexity Low_complexity 1 24 0 24 53 0 0 chr3 201177554 201177592 -26346986 + AT_rich Low_complexity Low_complexity 1 38 0 36 29 0 43 chr3 201177762 201177831 -26346747 + AT_rich Low_complexity Low_complexity 1 66 0 3257 185 42 27 chr3 201178847 201179559 -26345019 - L1MB3 LINE L1 -3 6180 5458 288 298 83 8 chr3 201179560 201179681 -26344897 - MIR SINE MIR -64 198 69 458 299 25 34 chr3 201180034 201180238 -26344340 + L2 LINE L2 3112 3313 0 21 36 0 0 chr3 201181338 201181366 -26343212 + AT_rich Low_complexity Low_complexity 1 28 0 722 189 31 0 chr3 201181445 201181572 -26343006 + MER20 DNA MER1_type 89 219 0 289 284 11 11 chr3 201181851 201181946 -26342632 + MIR SINE MIR 131 225 -37 189 333 0 0 chr3 201181984 201182044 -26342534 + MIR3 SINE MIR 105 164 -44 573 260 47 47 chr3 201182730 201182988 -26341590 + MER113 DNA MER1_type? 126 383 -138 28 79 0 0 chr3 201182989 201183052 -26341526 + AT_rich Low_complexity Low_complexity 1 63 0 550 230 61 14 chr3 201183152 201183300 -26341278 - MER5B DNA MER1_type -19 159 5 390 342 116 68 chr3 201183394 201184173 -26340405 + L3 LINE CR1 363 1220 -357 21 36 0 0 chr3 201184173 201184201 -26340377 + AT_rich Low_complexity Low_complexity 1 28 0 390 342 116 68 chr3 201184201 201184314 -26340264 + L3 LINE CR1 1220 1326 -251 642 225 65 24 chr3 201185625 201185794 -26338784 + MIR SINE MIR 73 248 -14 201 229 0 0 chr3 201185800 201185835 -26338743 + (CTG)n Simple_repeat Simple_repeat 2 36 0 296 308 28 28 chr3 201186592 201186735 -26337843 + LTR67 LTR ERVL 413 555 -2 14083 183 44 5 chr3 201236819 201241301 -26283277 - L1PBa LINE L1 -1967 4895 237 2124 116 0 10 chr3 201242147 201242441 -26282137 - AluSp SINE Alu -22 291 1 186 43 0 0 chr3 201243057 201243080 -26281498 + (TG)n Simple_repeat Simple_repeat 2 24 0 898 69 84 15 chr3 201243220 201243351 -26281227 + Tigger1 DNA MER2_type 2190 2329 -89 239 188 31 47 chr3 201243653 201243717 -26280861 + LTR37B LTR ERV1 8 70 -398 449 151 17 122 chr3 201244115 201244287 -26280291 + LTR37B LTR ERV1 315 468 0 2124 114 0 41 chr3 201244631 201244802 -26279776 - AluSx SINE Alu -8 304 150 2290 90 13 0 chr3 201244802 201245103 -26279475 - AluY SINE Alu -6 305 1 2124 114 0 41 chr3 201245103 201245248 -26279330 - AluSx SINE Alu -162 150 1 24 53 0 0 chr3 201247151 201247189 -26277389 + AT_rich Low_complexity Low_complexity 1 38 0 1971 144 0 7 chr3 201248310 201248601 -26275977 - AluJb SINE Alu -21 291 3 2609 34 0 0 chr3 201249333 201249631 -26274947 - AluY SINE Alu -13 298 1 256 246 58 0 chr3 201249631 201249700 -26274878 + MIR SINE MIR 101 173 -89 21 0 0 0 chr3 201249986 201250007 -26274571 + AT_rich Low_complexity Low_complexity 1 21 0 220 293 193 28 chr3 201250124 201250305 -26274273 - MIR SINE MIR -50 212 2 2190 106 7 0 chr3 201251588 201251880 -26272698 - AluSg1 SINE Alu -11 298 5 2348 63 0 7 chr3 201253254 201253554 -26271024 + AluY SINE Alu 1 298 -13 187 305 85 24 chr3 201254541 201254623 -26269955 - MIR3 SINE MIR -11 197 111 206 42 0 0 chr3 201254780 201254804 -26269774 + (A)n Simple_repeat Simple_repeat 1 24 0 363 243 63 58 chr3 201255542 201255748 -26268830 - L1MC4a LINE L1 -1813 5995 5789 272 362 13 33 chr3 201255759 201255911 -26268667 + L2 LINE L2 2752 2900 -414 22 35 0 0 chr3 201256051 201256080 -26268498 + AT_rich Low_complexity Low_complexity 1 29 0 774 193 6 31 chr3 201256108 201256269 -26268309 - MLT1D LTR MaLR 0 505 349 282 29 0 0 chr3 201256770 201256805 -26267773 + (CA)n Simple_repeat Simple_repeat 2 36 0 2127 167 3 8 chr3 201257555 201257921 -26266657 + THE1B LTR MaLR 1 364 0 222 235 78 20 chr3 201257995 201258046 -26266532 + MER5B DNA MER1_type 1 54 -124 318 325 81 41 chr3 201259016 201259213 -26265365 - MLT1J LTR MaLR -302 209 5 954 341 34 13 chr3 201259384 201259765 -26264813 + LTR16A LTR ERVL 55 443 -7 540 351 50 23 chr3 201259772 201260211 -26264367 + HERV16 LTR ERVL 1 451 -4545 22 70 0 0 chr3 201260534 201260577 -26264001 + AT_rich Low_complexity Low_complexity 1 43 0 486 316 0 7 chr3 201261763 201261899 -26262679 - MER58A DNA MER1_type 0 135 1 513 277 110 42 chr3 201261922 201262198 -26262380 - MLT1J LTR MaLR -156 253 2 428 314 58 12 chr3 201262225 201262397 -26262181 + MIR SINE MIR 45 224 -38 250 336 112 15 chr3 201262440 201262574 -26262004 - MIR SINE MIR -112 150 4 473 328 30 15 chr3 201262640 201262838 -26261740 - L2 LINE L2 -1612 1702 1502 2021 224 37 21 chr3 201262857 201263018 -26261560 - L1 LINE L1 -1664 4482 4325 2073 142 3 13 chr3 201263018 201263329 -26261249 - AluSg SINE Alu -2 308 1 2021 224 37 21 chr3 201263329 201263735 -26260843 - L1 LINE L1 -1821 4325 3906 381 192 0 0 chr3 201263735 201263808 -26260770 + L1P4 LINE L1 4496 4568 -1578 365 227 45 9 chr3 201263868 201263978 -26260600 + L1 LINE L1 4567 4680 -1466 * 494 144 0 0 chr3 201263959 201264049 -26260529 + L1P LINE L1 5293 5382 -784 * 2806 183 27 33 chr3 201264039 201264728 -26259850 + L1P4 LINE L1 4657 5343 -823 2060 134 3 0 chr3 201264728 201265020 -26259558 + AluSp SINE Alu 5 297 -16 2806 183 27 33 chr3 201265020 201265281 -26259297 + L1P4 LINE L1 5343 5604 -562 450 227 0 0 chr3 201265282 201265357 -26259221 + FRAM/FAM SINE Alu 1 71 -105 2056 224 62 11 chr3 201265786 201266331 -26258247 + MER90 LTR ERV1 3 575 0 1233 264 119 16 chr3 201266756 201267203 -26257375 + L1MEc LINE L1 91 583 -5813 382 258 89 48 chr3 201267242 201267366 -26257212 - MER58A DNA MER1_type -48 176 48 1924 283 63 66 chr3 201267402 201268883 -26255695 + L1MEc LINE L1 594 2070 -4326 516 145 0 0 chr3 201268886 201268969 -26255609 + L1MC/D LINE L1 5498 5580 -779 813 223 5 47 chr3 201268979 201269194 -26255384 + L1MD2 LINE L1 6139 6344 -15 730 236 179 14 chr3 201269215 201269512 -26255066 + L1MEc LINE L1 2415 2760 -3455 738 283 38 5 chr3 201269517 201269729 -26254849 - MER58A DNA MER1_type 0 224 6 225 221 26 0 chr3 201269774 201269851 -26254727 + (TTA)n Simple_repeat Simple_repeat 3 81 0 1888 205 78 103 chr3 201269901 201270748 -26253830 - LTR1B LTR ERV1 0 826 1 693 254 18 25 chr3 201270749 201271024 -26253554 + L1MEc LINE L1 2846 3118 -3097 858 226 70 0 chr3 201271042 201271241 -26253337 - MER58A DNA MER1_type -5 219 7 550 323 94 10 chr3 201271348 201271645 -26252933 + HERV16 LTR ERVL 1255 1576 -3420 2252 322 60 25 chr3 201271663 201272744 -26251834 + HERV16 LTR ERVL 1694 2812 -2184 650 160 59 0 chr3 201272835 201272954 -26251624 - L1M3 LINE L1 -430 5750 5625 565 242 75 32 chr3 201272973 201273225 -26251353 - HAL1 LINE L1 0 2507 2245 1047 267 60 48 chr3 201273517 201274164 -26250414 + L1MEc LINE L1 2342 2996 -3219 373 290 40 0 chr3 201274171 201274295 -26250283 + L1MEc LINE L1 3070 3198 -3017 1985 127 43 32 chr3 201274524 201274895 -26249683 - THE1C LTR MaLR 0 375 1 23 33 0 0 chr3 201275411 201275441 -26249137 + AT_rich Low_complexity Low_complexity 1 30 0 714 136 8 8 chr3 201275545 201275663 -26248915 + L1MA4 LINE L1 4823 4940 -1206 3253 167 12 2 chr3 201275663 201276260 -26248318 + L1MA4 LINE L1 5691 6300 0 214 341 54 31 chr3 201276354 201276483 -26248095 + L2 LINE L2 3136 3267 -5 2790 10 0 10 chr3 201276966 201277280 -26247298 - AluYa5 SINE Alu 0 311 1 323 178 0 14 chr3 201278306 201278379 -26246199 + CT-rich Low_complexity Low_complexity 2 73 0 208 365 19 19 chr3 201279465 201279572 -26245006 - MIR3 SINE MIR -11 197 91 544 144 196 26 chr3 201280288 201280441 -26244137 + pTR5 LTR ERV1 1841 2019 -419 289 279 0 0 chr3 201280441 201280527 -26244051 + LTR30 LTR ERV1 539 624 -98 2494 87 0 3 chr3 201280527 201280872 -26243706 + pTR5 LTR ERV1 49 392 -2046 235 250 94 0 chr3 201281060 201281124 -26243454 + L2 LINE L2 3203 3272 0 271 255 61 51 chr3 201282035 201282133 -26242445 - MIR SINE MIR -107 155 57 423 235 101 0 chr3 201282751 201282870 -26241708 + L1ME1 LINE L1 6031 6161 -5 2172 168 58 17 chr3 201283051 201283462 -26241116 - MSTA LTR MaLR 0 428 1 253 296 37 12 chr3 201283691 201283772 -26240806 + L2 LINE L2 3229 3311 -2 24 0 0 0 chr3 201285340 201285364 -26239214 + AT_rich Low_complexity Low_complexity 1 24 0 438 69 0 0 chr3 201285653 201285711 -26238867 + (TAGA)n Simple_repeat Simple_repeat 3 60 0 195 42 0 0 chr3 201286111 201286135 -26238443 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 236 171 34 11 chr3 201286181 201286269 -26238309 + (TA)n Simple_repeat Simple_repeat 1 90 0 648 326 76 7 chr3 201286273 201286561 -26238017 - L2 LINE L2 -1 3312 3005 13660 140 42 8 chr3 201287692 201289249 -26235329 - Tigger1 DNA MER2_type 0 2418 754 2106 133 3 0 chr3 201289249 201289549 -26235029 - AluSq SINE Alu -12 301 1 13660 140 42 8 chr3 201289549 201290330 -26234248 - Tigger1 DNA MER2_type -1664 754 1 190 392 0 0 chr3 201290898 201290949 -26233629 + T-rich Low_complexity Low_complexity 1 51 0 2112 162 35 85 chr3 201291117 201291913 -26232665 - pTR5 LTR ERV1 -942 1496 741 1137 242 49 38 chr3 201291914 201292436 -26232142 + LTR40a LTR ERVL 49 519 0 371 324 67 31 chr3 201292436 201292661 -26231917 - L2 LINE L2 -377 2937 2705 243 375 80 9 chr3 201292678 201292790 -26231788 + MIR SINE MIR 10 129 -133 1404 176 30 10 chr3 201292801 201293493 -26231085 + L1MB2 LINE L1 5415 6169 -2 30 0 0 0 chr3 201293978 201294008 -26230570 + AT_rich Low_complexity Low_complexity 1 30 0 2267 241 41 22 chr3 201294143 201294538 -26230040 - L1ME1 LINE L1 -190 5976 5561 2383 89 0 0 chr3 201294538 201294840 -26229738 + AluSx SINE Alu 1 302 -10 2267 241 41 22 chr3 201294840 201295132 -26229446 - L1ME1 LINE L1 -605 5561 5276 281 276 204 0 chr3 201296255 201296436 -26228142 + L1ME LINE L1 5485 5702 -468 1052 306 33 8 chr3 201298094 201298331 -26226247 - LTR16A LTR ERVL -5 445 193 2428 70 0 10 chr3 201298331 201298643 -26225935 - AluY SINE Alu -2 309 1 1052 306 33 8 chr3 201298643 201298797 -26225781 - LTR16A LTR ERVL -257 193 44 780 204 12 0 chr3 201299399 201299561 -26225017 + Charlie1 DNA MER1_type 2345 2508 -253 25 90 0 0 chr3 201299568 201299635 -26224943 + AT_rich Low_complexity Low_complexity 1 67 0 2108 264 72 75 chr3 201300298 201302025 -26222553 + L1ME4a LINE L1 3331 5052 -1094 1081 211 33 4 chr3 201302569 201302811 -26221767 + L1 LINE L1 4363 4611 -1535 25 0 0 0 chr3 201303441 201303466 -26221112 + AT_rich Low_complexity Low_complexity 1 25 0 267 280 146 28 chr3 201303738 201304059 -26220519 + L1ME4a LINE L1 5739 6097 -24 2116 137 0 3 chr3 201304654 201304967 -26219611 - AluSx SINE Alu 0 312 1 954 252 28 50 chr3 201304967 201305391 -26219187 + L1ME1 LINE L1 5574 5988 -178 364 328 79 0 chr3 201305608 201305797 -26218781 - L2 LINE L2 -2380 934 731 567 93 21 52 chr3 201305799 201305896 -26218682 + AluSg/x SINE Alu 219 312 0 417 307 16 0 chr3 201305919 201306046 -26218532 - L2 LINE L2 -2617 697 569 3551 210 14 55 chr3 201307381 201307976 -26216602 - L1MB7 LINE L1 -10 6174 5633 1605 206 28 14 chr3 201307976 201308335 -26216243 - MLT1A1 LTR MaLR 0 365 2 3551 210 14 55 chr3 201308335 201308697 -26215881 - L1MB7 LINE L1 -551 5633 5257 753 225 0 0 chr3 201308711 201308840 -26215738 + Tigger3b DNA MER2_type 1 129 -1102 779 103 0 103 chr3 201308973 201309109 -26215469 + MER1B DNA MER1_type 218 339 0 5612 153 25 4 chr3 201309109 201310120 -26214458 + Tigger3b DNA MER2_type 194 1225 -6 3700 232 85 40 chr3 201310126 201310423 -26214155 - L1MB7 LINE L1 -905 5241 4959 1664 162 48 50 chr3 201310423 201310799 -26213779 + THE1C LTR MaLR 1 375 0 3700 232 85 40 chr3 201310799 201311908 -26212670 - L1MB7 LINE L1 -1187 4959 3773 2263 186 90 10 chr3 201311925 201312425 -26212153 + MER34 LTR ERV1 1 540 -2 240 176 59 0 chr3 201312685 201312736 -26211842 + MER116 DNA Mariner 1 54 -26 456 254 26 9 chr3 201312896 201313010 -26211568 + L2 LINE L2 3183 3298 -15 189 74 0 0 chr3 201313012 201313039 -26211539 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 26 30 0 0 chr3 201313214 201313247 -26211331 + AT_rich Low_complexity Low_complexity 1 33 0 33 25 0 0 chr3 201313844 201313884 -26210694 + AT_rich Low_complexity Low_complexity 1 40 0 479 311 150 17 chr3 201314094 201314274 -26210304 - MIR SINE MIR -48 214 11 21 57 0 0 chr3 201314274 201314309 -26210269 + AT_rich Low_complexity Low_complexity 1 35 0 1565 271 77 32 chr3 201314397 201315189 -26209389 - L1M4 LINE L1 -1287 4859 4032 1408 96 0 14 chr3 201315380 201315588 -26208990 - L1PA7 LINE L1 -2 6152 5948 24 32 0 0 chr3 201315709 201315740 -26208838 + AT_rich Low_complexity Low_complexity 1 31 0 1156 213 113 38 chr3 201315958 201316278 -26208300 - MER2 DNA MER2_type 0 344 1 54 62 0 0 chr3 201316293 201316389 -26208189 + AT_rich Low_complexity Low_complexity 1 96 0 26 0 0 0 chr3 201317358 201317384 -26207194 + AT_rich Low_complexity Low_complexity 1 26 0 548 139 12 0 chr3 201317396 201317482 -26207096 - AluSg/x SINE Alu -21 288 202 827 82 27 0 chr3 201317485 201317595 -26206983 + L1PB1 LINE L1 5540 5652 -499 244 61 0 41 chr3 201317597 201317646 -26206932 + (TA)n Simple_repeat Simple_repeat 1 47 0 581 80 4 73 chr3 201317779 201318057 -26206521 + (TA)n Simple_repeat Simple_repeat 1 258 0 519 108 0 57 chr3 201318080 201318237 -26206341 + (TA)n Simple_repeat Simple_repeat 2 149 0 2118 156 3 0 chr3 201318238 201318598 -26205980 + L1PB1 LINE L1 5783 6143 -8 222 271 43 14 chr3 201318640 201318710 -26205868 + L2 LINE L2 2748 2819 -495 463 344 77 36 chr3 201318777 201319140 -26205438 + L2 LINE L2 2936 3313 0 6264 110 23 6 chr3 201319214 201320213 -26204365 - L1MA3 LINE L1 0 6305 5290 264 277 0 0 chr3 201320959 201321024 -26203554 + GA-rich Low_complexity Low_complexity 4 68 0 22 56 0 0 chr3 201321819 201321855 -26202723 + AT_rich Low_complexity Low_complexity 1 36 0 24 0 0 0 chr3 201323450 201323474 -26201104 + AT_rich Low_complexity Low_complexity 1 24 0 698 316 35 4 chr3 201323606 201323834 -26200744 - MIR SINE MIR 0 262 28 1307 25 25 0 chr3 201324430 201324592 -26199986 - L1P2 LINE L1 -358 5797 5632 185 0 0 39 chr3 201324617 201324643 -26199935 + (TATG)n Simple_repeat Simple_repeat 4 28 0 398 79 111 0 chr3 201324646 201324709 -26199869 + L1PA5 LINE L1 6076 6145 -9 1237 224 141 18 chr3 201325132 201325516 -26199062 - MER63B DNA MER1_type -5 431 1 441 220 37 105 chr3 201325704 201325827 -26198751 + MER5B DNA MER1_type 1 131 -47 562 26 26 0 chr3 201325827 201325903 -26198675 + (TCTA)n Simple_repeat Simple_repeat 4 81 0 1944 88 6 95 chr3 201325904 201326221 -26198357 - AluSx SINE Alu -23 289 1 441 220 37 105 chr3 201326221 201326286 -26198292 + MER5B DNA MER1_type 130 178 0 1066 226 26 22 chr3 201327024 201327254 -26197324 + MLT1E LTR MaLR 2 232 -361 874 255 72 0 chr3 201327262 201327470 -26197108 + MLT1E LTR MaLR 370 592 -1 390 185 0 0 chr3 201327656 201327737 -26196841 + CT-rich Low_complexity Low_complexity 4 84 0 389 336 30 15 chr3 201327917 201328048 -26196530 + L2 LINE L2 3139 3271 -1 264 303 13 0 chr3 201329028 201329104 -26195474 + MIR SINE MIR 64 140 -122 276 30 0 0 chr3 201329885 201329918 -26194660 + (CA)n Simple_repeat Simple_repeat 2 34 0 5726 169 18 25 chr3 201331265 201331628 -26192950 - L1PB1 LINE L1 -2 6149 5785 387 0 0 0 chr3 201331628 201331671 -26192907 + (TA)n Simple_repeat Simple_repeat 1 43 0 5726 169 18 25 chr3 201331671 201333040 -26191538 - L1PB1 LINE L1 -366 5785 4436 2344 62 3 0 chr3 201333040 201333344 -26191234 - L1PA7 LINE L1 -15 6139 5835 5726 169 18 25 chr3 201333344 201333705 -26190873 - L1PB1 LINE L1 -1715 4436 4074 23 0 0 0 chr3 201334417 201334440 -26190138 + AT_rich Low_complexity Low_complexity 1 23 0 315 0 0 0 chr3 201334483 201334518 -26190060 + (TA)n Simple_repeat Simple_repeat 1 35 0 26 0 0 0 chr3 201336094 201336120 -26188458 + AT_rich Low_complexity Low_complexity 1 26 0 25 73 0 0 chr3 201336732 201336773 -26187805 + AT_rich Low_complexity Low_complexity 1 41 0 5303 247 49 42 chr3 201337050 201339367 -26185211 + L1MA9 LINE L1 3102 5438 -2127 2136 179 44 7 chr3 201339370 201339783 -26184795 + MSTA LTR MaLR 1 428 0 9097 177 20 15 chr3 201339787 201341420 -26183158 + MSTA-int LTR MaLR 11 1651 0 2327 137 54 15 chr3 201341422 201341830 -26182748 + MSTA LTR MaLR 3 426 -2 599 193 36 14 chr3 201341833 201341973 -26182605 + L1MA9 LINE L1 5438 5580 -1985 12881 161 17 25 chr3 201341981 201342738 -26181840 - Tigger1 DNA MER2_type -72 2346 1585 2164 134 0 0 chr3 201342738 201343036 -26181542 - AluSg SINE Alu -12 298 1 12881 161 17 25 chr3 201343036 201344638 -26179940 - Tigger1 DNA MER2_type -833 1585 5 3650 191 44 80 chr3 201344640 201345717 -26178861 + L1MA9 LINE L1 6657 7693 -38 519 313 84 16 chr3 201345770 201346090 -26178488 + L1ME2 LINE L1 3472 3813 -2333 3037 191 24 18 chr3 201346297 201347418 -26177160 + L1P4 LINE L1 5981 7107 -478 25 0 0 0 chr3 201348031 201348056 -26176522 + AT_rich Low_complexity Low_complexity 1 25 0 424 68 104 0 chr3 201348973 201349136 -26175442 + (TA)n Simple_repeat Simple_repeat 1 180 0 294 168 28 28 chr3 201349139 201349246 -26175332 + (TTATA)n Simple_repeat Simple_repeat 3 109 0 356 121 73 6 chr3 201349249 201349414 -26175164 + (TA)n Simple_repeat Simple_repeat 2 177 0 2075 227 33 28 chr3 201349414 201350018 -26174560 + L1M2 LINE L1 1951 2557 -4292 1220 244 20 16 chr3 201350282 201350585 -26173993 - L1M2a LINE L1 -6861 307 4 900 294 70 30 chr3 201350642 201351330 -26173248 - L1M4 LINE L1 -2750 3396 2682 323 233 13 1 chr3 201351687 201351781 -26172797 + L1M2 LINE L1 2865 2999 -3889 * 1056 267 71 20 chr3 201351773 201352319 -26172259 + L1ME2 LINE L1 4651 5224 -922 228 270 40 0 chr3 201352328 201352402 -26172176 + L1MC3 LINE L1 6043 6119 -1666 * 1052 259 56 62 chr3 201352401 201352899 -26171679 + L1ME2 LINE L1 5494 5988 -176 1517 185 13 67 chr3 201353097 201353470 -26171108 + MER46B DNA MER2_type 2 229 -7 27 0 0 0 chr3 201353816 201353843 -26170735 + AT_rich Low_complexity Low_complexity 1 27 0 219 326 31 41 chr3 201354046 201354144 -26170434 - MER5B DNA MER1_type -4 174 78 860 175 25 0 chr3 201355558 201355712 -26168866 + L1MC1 LINE L1 6168 6326 -2 2027 155 0 0 chr3 201355712 201356021 -26168557 + AluSx SINE Alu 1 309 -3 26 64 0 0 chr3 201356033 201356080 -26168498 + AT_rich Low_complexity Low_complexity 1 47 0 255 363 10 0 chr3 201356414 201356516 -26168062 - MER5B DNA MER1_type -1 177 75 1315 38 0 0 chr3 201356645 201356805 -26167773 - L1PA4 LINE L1 -2 6153 5994 186 43 0 0 chr3 201359395 201359418 -26165160 + (TTTTG)n Simple_repeat Simple_repeat 3 25 0 1084 298 94 3 chr3 201359423 201359805 -26164773 - LTR16A LTR ERVL 0 450 34 1190 159 20 0 chr3 201360231 201360426 -26164152 + MER72 LTR ERV1 1 199 -523 1229 145 214 60 chr3 201360439 201360588 -26163990 - MSTA LTR MaLR -62 366 241 1717 163 32 0 chr3 201360588 201360865 -26163713 - AluJb SINE Alu -22 290 5 1229 145 214 60 chr3 201360865 201361032 -26163546 - MSTA LTR MaLR -187 241 1 257 139 70 0 chr3 201361034 201361077 -26163501 + MERVL LTR ERVL 4450 4495 -990 861 133 19 70 chr3 201361095 201361253 -26163325 + MER72 LTR ERV1 177 326 -396 1978 125 7 0 chr3 201361261 201361548 -26163030 + MER72 LTR ERV1 434 722 0 361 298 117 24 chr3 201361598 201361803 -26162775 + MIR SINE MIR 36 259 -3 368 22 0 0 chr3 201362275 201362321 -26162257 - MADE1 DNA Mariner 0 80 35 254 309 44 29 chr3 201362391 201362527 -26162051 + MLT1H LTR MaLR 12 149 -400 2118 129 42 21 chr3 201363021 201363400 -26161178 + L1MA5 LINE L1 5904 6290 -10 2200 101 0 0 chr3 201363410 201363723 -26160855 - AluSx SINE Alu 0 313 1 23 78 0 0 chr3 201363735 201363786 -26160792 + AT_rich Low_complexity Low_complexity 1 51 0 468 246 35 123 chr3 201366156 201366416 -26158162 + L2 LINE L2 3077 3313 0 285 307 108 80 chr3 201366414 201366481 -26158097 + L2 LINE L2 2917 2981 -332 * 1385 206 66 20 chr3 201366481 201366830 -26157748 + MLT1A1 LTR MaLR 1 365 0 285 307 108 80 chr3 201366830 201367124 -26157454 + L2 LINE L2 2981 3288 -25 389 336 15 0 chr3 201367442 201367573 -26157005 - L2 LINE L2 -345 2969 2837 199 319 109 8 chr3 201369189 201369308 -26155270 + MIR SINE MIR 114 244 -18 289 210 320 0 chr3 201370071 201370171 -26154407 + L2 LINE L2 3182 3313 0 35 54 0 0 chr3 201370353 201370409 -26154169 + AT_rich Low_complexity Low_complexity 1 56 0 1960 133 0 3 chr3 201370434 201370720 -26153858 + AluSx SINE Alu 1 285 -27 307 279 109 37 chr3 201371985 201372279 -26152299 + L1ME LINE L1 5506 5820 -301 21 0 0 0 chr3 201372406 201372427 -26152151 + AT_rich Low_complexity Low_complexity 1 21 0 22 35 0 0 chr3 201372459 201372488 -26152090 + AT_rich Low_complexity Low_complexity 1 29 0 337 289 11 126 chr3 201372652 201372915 -26151663 + L2 LINE L2 3081 3313 0 552 320 56 56 chr3 201374475 201374866 -26149712 + LTR16B LTR ERVL 31 421 -43 206 329 13 13 chr3 201375134 201375213 -26149365 + MER5B DNA MER1_type 1 79 -99 844 181 0 0 chr3 201375754 201375898 -26148680 - AluJb SINE Alu -44 268 125 421 250 49 21 chr3 201376875 201377019 -26147559 + Charlie8 DNA MER1_type 45 192 -2225 365 325 45 13 chr3 201377243 201377397 -26147181 + L2 LINE L2 2326 2484 -830 3947 203 32 20 chr3 201377410 201377731 -26146847 - L1MA7 LINE L1 -2 6289 5973 2607 116 3 0 chr3 201377731 201378094 -26146484 + THE1B LTR MaLR 1 364 0 3947 203 32 20 chr3 201378094 201378684 -26145894 - L1MA7 LINE L1 -318 5973 5367 916 267 0 8 chr3 201378685 201378936 -26145642 - L1MA7 LINE L1 -3274 2872 2624 1090 288 57 19 chr3 201378937 201379409 -26145169 - L1M4c LINE L1 -4772 1612 1123 2639 173 2 0 chr3 201379424 201379904 -26144674 - L1MA6 LINE L1 -6 7315 6835 879 211 56 85 chr3 201379993 201380488 -26144090 - LTR28 LTR ERV1 -138 894 1 9655 181 34 27 chr3 201380488 201382342 -26142236 - L1MA6 LINE L1 -467 6854 4970 2492 49 0 7 chr3 201382342 201382648 -26141930 - AluY SINE Alu -7 304 1 9655 181 34 27 chr3 201382648 201383450 -26141128 - L1MA6 LINE L1 -2351 4970 4176 4365 236 70 35 chr3 201383422 201385230 -26139348 - L1MA6 LINE L1 -4059 3108 1573 * 1426 318 65 19 chr3 201385343 201385798 -26138780 - L1MA6 LINE L1 -6488 680 185 2152 106 10 0 chr3 201385798 201386099 -26138479 - AluSg SINE Alu -6 304 1 1426 318 65 19 chr3 201386099 201386287 -26138291 - L1MA6 LINE L1 -6983 185 7 2226 269 50 53 chr3 201386289 201387132 -26137446 - L1M3b LINE L1 -4751 1530 691 2010 189 23 18 chr3 201387922 201388314 -26136264 + MSTB1 LTR MaLR 1 394 -38 383 204 0 65 chr3 201388320 201388413 -26136165 + MLT1D LTR MaLR 14 100 -405 246 100 0 25 chr3 201388406 201388446 -26136132 + MSTB1 LTR MaLR 394 432 0 * 343 236 57 19 chr3 201388456 201388562 -26136016 - L1M3b LINE L1 -5844 427 318 183 222 0 0 chr3 201388563 201388599 -26135979 + L2 LINE L2 3001 3036 -236 427 311 62 58 chr3 201389017 201389274 -26135304 + L2 LINE L2 3042 3299 -14 26 30 0 0 chr3 201389348 201389381 -26135197 + AT_rich Low_complexity Low_complexity 1 33 0 931 196 70 63 chr3 201389436 201389864 -26134714 + MLT1D LTR MaLR 1 505 0 364 82 0 0 chr3 201391896 201391945 -26132633 - MLT2B3 LTR ERVL 0 520 472 1311 206 40 14 chr3 201391945 201392222 -26132356 - MLT2B3 LTR ERVL -270 284 1 616 304 48 40 chr3 201392514 201392935 -26131643 - HAL1 LINE L1 0 2507 2084 704 260 132 30 chr3 201392970 201393266 -26131312 + MLT1J2 LTR MaLR 4 329 -121 700 128 8 8 chr3 201393293 201393418 -26131160 + (GGAA)n Simple_repeat Simple_repeat 2 126 0 442 326 98 30 chr3 201393445 201393681 -26130897 - MIR SINE MIR 0 262 11 268 247 14 0 chr3 201394326 201394399 -26130179 + L1M LINE L1 5322 5395 -767 1676 293 97 20 chr3 201394453 201395122 -26129456 - L1ME3A LINE L1 -5 6165 5549 2780 62 0 26 chr3 201395122 201395469 -26129109 - L1PA8 LINE L1 -4 6168 5830 2512 78 0 0 chr3 201395469 201395777 -26128801 - AluSg SINE Alu -2 308 1 2780 62 0 26 chr3 201395777 201395815 -26128763 - L1PA8 LINE L1 -342 5830 5793 1676 293 97 20 chr3 201395815 201396230 -26128348 - L1ME3A LINE L1 -621 5549 5167 2284 81 34 0 chr3 201396230 201396526 -26128052 - AluSg SINE Alu -4 306 1 1676 293 97 20 chr3 201396526 201397171 -26127407 - L1ME3A LINE L1 -1003 5167 4278 1029 240 121 64 chr3 201397235 201397998 -26126580 - L1ME3A LINE L1 -2101 4045 3224 2223 99 0 34 chr3 201397998 201398321 -26126257 - AluSx SINE Alu 0 312 1 1029 240 121 64 chr3 201398321 201398435 -26126143 - L1ME3A LINE L1 -2922 3224 3118 22 35 0 0 chr3 201398511 201398540 -26126038 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr3 201398816 201398855 -26125723 + AT_rich Low_complexity Low_complexity 1 39 0 183 318 59 0 chr3 201399080 201399165 -26125413 - MIR SINE MIR -108 154 65 1773 131 7 0 chr3 201400598 201400872 -26123706 - AluSp SINE Alu -3 310 35 274 342 47 7 chr3 201400874 201401023 -26123555 + MIR3 SINE MIR 53 207 -1 24 0 0 0 chr3 201401776 201401800 -26122778 + AT_rich Low_complexity Low_complexity 1 24 0 2071 107 7 0 chr3 201402524 201402804 -26121774 + AluSx SINE Alu 12 293 -19 21 0 0 0 chr3 201402804 201402825 -26121753 + AT_rich Low_complexity Low_complexity 1 21 0 1485 182 18 7 chr3 201402825 201403100 -26121478 - MER2 DNA MER2_type -67 278 1 23 0 0 0 chr3 201405767 201405790 -26118788 + AT_rich Low_complexity Low_complexity 1 23 0 250 239 60 0 chr3 201405971 201406038 -26118540 + L1ME3A LINE L1 6099 6169 -1 842 193 0 0 chr3 201406106 201406251 -26118327 - FRAM SINE Alu -27 149 5 260 247 31 62 chr3 201406317 201406414 -26118164 + MER5A DNA MER1_type 95 188 -1 1710 272 82 19 chr3 201408949 201409814 -26114764 - L1ME3A LINE L1 -8 6162 5177 1480 251 52 23 chr3 201409816 201410454 -26114124 + L1ME LINE L1 5092 5741 -425 2384 163 9 35 chr3 201410823 201411258 -26113320 - MSTB1 LTR MaLR 0 432 9 21 0 0 0 chr3 201413060 201413081 -26111497 + AT_rich Low_complexity Low_complexity 1 21 0 201 121 0 0 chr3 201413385 201413418 -26111160 + (TC)n Simple_repeat Simple_repeat 2 34 0 247 366 49 8 chr3 201413463 201413586 -26110992 - MIR3 SINE MIR -27 181 54 336 319 0 0 chr3 201414745 201414836 -26109742 + L3 LINE CR1 980 1070 -507 302 232 20 61 chr3 201414984 201415083 -26109495 - L1MC4 LINE L1 -1339 6703 6609 190 107 45 54 chr3 201415100 201415212 -26109366 + (TA)n Simple_repeat Simple_repeat 1 111 0 258 137 40 46 chr3 201415253 201415428 -26109150 + (TTATA)n Simple_repeat Simple_repeat 1 174 0 323 217 33 8 chr3 201415428 201415548 -26109030 + (TATAA)n Simple_repeat Simple_repeat 2 124 0 570 136 46 26 chr3 201415552 201415898 -26108680 + (TA)n Simple_repeat Simple_repeat 1 353 0 237 174 46 9 chr3 201416061 201416170 -26108408 + (TA)n Simple_repeat Simple_repeat 1 113 0 23 33 0 0 chr3 201416380 201416410 -26108168 + AT_rich Low_complexity Low_complexity 1 30 0 21 36 0 0 chr3 201416494 201416522 -26108056 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 201416608 201416630 -26107948 + AT_rich Low_complexity Low_complexity 1 22 0 415 289 78 12 chr3 201416827 201416993 -26107585 + MIR SINE MIR 82 258 -4 190 347 93 0 chr3 201416993 201417068 -26107510 + L3 LINE CR1 1063 1144 -433 192 97 0 0 chr3 201417164 201417195 -26107383 + (TG)n Simple_repeat Simple_repeat 2 32 0 552 289 87 0 chr3 201417462 201417635 -26106943 + L3 LINE CR1 1153 1340 -237 314 360 55 37 chr3 201417850 201418014 -26106564 - L2 LINE L2 -10 3262 3096 2953 162 14 19 chr3 201420069 201420650 -26103928 - L1MB3 LINE L1 -7 6176 5599 297 313 10 0 chr3 201421799 201421898 -26102680 + MIR SINE MIR 40 139 -69 245 367 133 11 chr3 201422297 201422567 -26102011 - L2 LINE L2 -404 2910 2608 196 329 24 0 chr3 201422880 201422965 -26101613 + L2 LINE L2 2897 2983 -289 29 0 0 0 chr3 201424153 201424182 -26100396 + AT_rich Low_complexity Low_complexity 1 29 0 2383 63 3 6 chr3 201426061 201426379 -26098199 - LTR7 LTR ERV1 -133 317 1 801 119 46 20 chr3 201426680 201426831 -26097747 + L1MA4A LINE L1 6148 6302 -1 1856 137 18 0 chr3 201429056 201429361 -26095217 + AluSx SINE Alu 1 310 0 1993 230 14 9 chr3 201429584 201430014 -26094564 + MER74C LTR ERVL 9 440 -20 740 301 12 24 chr3 201430191 201430437 -26094141 - MIR SINE MIR -3 259 17 241 397 25 8 chr3 201430759 201430880 -26093698 - MIR SINE MIR -112 150 28 282 333 134 11 chr3 201431747 201431933 -26092645 - MIR SINE MIR -7 255 47 236 30 30 0 chr3 201432264 201432297 -26092281 + (TG)n Simple_repeat Simple_repeat 1 34 0 547 260 41 25 chr3 201432304 201432500 -26092078 - MIR SINE MIR -48 214 16 23 68 0 0 chr3 201432654 201432698 -26091880 + AT_rich Low_complexity Low_complexity 1 44 0 476 346 48 79 chr3 201432879 201433201 -26091377 - L2 LINE L2 -276 3037 2721 2427 70 0 13 chr3 201433201 201433516 -26091062 - AluY SINE Alu 0 311 1 476 346 48 79 chr3 201433516 201433628 -26090950 - L2 LINE L2 -592 2721 2607 1039 265 62 15 chr3 201433631 201433955 -26090623 - MER58B DNA MER1_type -1 340 2 639 325 20 43 chr3 201434155 201434503 -26090075 - L3 LINE CR1 -117 1460 1121 22 0 0 0 chr3 201434527 201434549 -26090029 + AT_rich Low_complexity Low_complexity 1 22 0 1605 181 69 29 chr3 201435442 201435817 -26088761 - MLT1B LTR MaLR 0 390 1 646 260 45 87 chr3 201435925 201436213 -26088365 - LTR33A LTR ERVL -5 518 243 225 364 25 16 chr3 201436501 201436622 -26087956 - MLT1L LTR MaLR -409 206 85 283 336 9 0 chr3 201437118 201437228 -26087350 - MIR SINE MIR -142 120 10 895 249 0 5 chr3 201438612 201438821 -26085757 + MER3 DNA MER1_type 1 208 -1 243 0 0 0 chr3 201439065 201439092 -26085486 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 27 0 0 0 chr3 201439877 201439904 -26084674 + AT_rich Low_complexity Low_complexity 1 27 0 1579 173 45 0 chr3 201440078 201440367 -26084211 - MLT1B LTR MaLR -88 302 1 258 245 0 0 chr3 201441096 201441149 -26083429 + AluJ/monomer SINE Alu 245 297 -5 216 158 0 0 chr3 201441154 201441192 -26083386 + GA-rich Low_complexity Low_complexity 3 40 0 * 278 49 0 24 chr3 201441190 201441231 -26083347 + (GAAAA)n Simple_repeat Simple_repeat 5 44 0 5107 145 33 6 chr3 201442048 201443030 -26081548 + L1PA16 LINE L1 5153 6161 -5 3446 62 0 7 chr3 201443248 201443699 -26080879 - LTR7 LTR ERV1 -2 448 1 2439 89 45 16 chr3 201443699 201444080 -26080498 - HERVH LTR ERV1 0 7713 7322 1381 122 18 14 chr3 201444078 201444300 -26080278 - HERVH LTR ERV1 -1894 5819 5597 * 4390 135 3 1 chr3 201444297 201444958 -26079620 - HERVH LTR ERV1 -2564 5149 4488 3254 116 2 4 chr3 201444960 201445452 -26079126 - HERVH LTR ERV1 -3720 3993 3503 922 140 7 0 chr3 201445454 201445604 -26078974 - HERVH LTR ERV1 -4423 3290 3140 * 19840 99 22 9 chr3 201445583 201448540 -26076038 - HERVH LTR ERV1 -4718 2995 1 697 90 0 20 chr3 201448542 201448642 -26075936 - LTR7 LTR ERV1 -2 448 351 466 330 86 5 chr3 201449403 201449612 -26074966 - MIR SINE MIR -6 256 31 3273 227 105 112 chr3 201450135 201450426 -26074152 + L1MD1 LINE L1 1 292 -6248 195 42 0 0 chr3 201450426 201450450 -26074128 + (TA)n Simple_repeat Simple_repeat 2 25 0 3273 227 105 112 chr3 201450450 201451315 -26073263 + L1MD1 LINE L1 292 1161 -5379 427 229 0 0 chr3 201451315 201451398 -26073180 - Tigger5 DNA MER2_type 0 2323 2241 3273 227 105 112 chr3 201451398 201451928 -26072650 + L1MD1 LINE L1 1161 1760 -4780 7581 32 0 0 chr3 201451928 201453334 -26071244 - L1PA3 LINE L1 0 6155 4750 3273 227 105 112 chr3 201453334 201453395 -26071183 + L1MD1 LINE L1 1760 1820 -4720 3800 128 46 5 chr3 201453395 201454007 -26070571 + Tigger1 DNA MER2_type 331 967 -1451 4415 218 46 13 chr3 201454008 201455750 -26068828 + L1MD1 LINE L1 4838 6635 -1 433 158 26 0 chr3 201456121 201456197 -26068381 + MSTB1 LTR MaLR 345 422 -10 8906 206 42 19 chr3 201457604 201458035 -26066543 - L1MA4A LINE L1 -11 7354 6934 1441 214 10 20 chr3 201458035 201458330 -26066248 + AluJo SINE Alu 1 292 -10 8906 206 42 19 chr3 201458330 201459293 -26065285 - L1MA4A LINE L1 -431 6934 5995 1534 146 50 119 chr3 201459293 201459330 -26065248 - THE1C LTR MaLR 0 375 337 1468 121 0 0 chr3 201459330 201459564 -26065014 + AluSq SINE Alu 85 318 0 1534 146 50 119 chr3 201459564 201459928 -26064650 - THE1C LTR MaLR -38 337 1 8906 206 42 19 chr3 201459928 201461272 -26063306 - L1MA4A LINE L1 -1370 5995 4683 2207 123 0 0 chr3 201461272 201461574 -26063004 - AluSg SINE Alu -8 302 1 8906 206 42 19 chr3 201461574 201461606 -26062972 - L1MA4A LINE L1 -2682 4683 4653 1482 216 10 14 chr3 201461606 201461898 -26062680 - AluJo SINE Alu -21 291 1 8906 206 42 19 chr3 201461898 201462651 -26061927 - L1MA4A LINE L1 -2712 4653 3734 246 81 0 0 chr3 201462652 201462689 -26061889 + (TG)n Simple_repeat Simple_repeat 2 38 0 1134 127 36 5 chr3 201462689 201462909 -26061669 - L1MA4A LINE L1 -4809 2400 2174 686 195 0 0 chr3 201462906 201463024 -26061554 + L1M2 LINE L1 1413 1530 -5319 * 2837 223 41 4 chr3 201463024 201463643 -26060935 - L1MA4A LINE L1 -6588 621 2 373 265 99 55 chr3 201463976 201464031 -26060547 - MIR SINE MIR 0 262 211 303 85 0 0 chr3 201464031 201464078 -26060500 + (TG)n Simple_repeat Simple_repeat 2 48 0 373 265 99 55 chr3 201464078 201464203 -26060375 - MIR SINE MIR -51 211 74 1191 268 136 52 chr3 201464618 201464996 -26059582 + L1ME3A LINE L1 3679 4024 -2122 3604 148 36 7 chr3 201464996 201465613 -26058965 - MER41B LTR ERV1 0 635 1 1191 268 136 52 chr3 201465613 201465631 -26058947 + L1ME3A LINE L1 4024 4039 -2107 3613 54 2 0 chr3 201465631 201466077 -26058501 - L1PA7 LINE L1 -2 6152 5706 1191 268 136 52 chr3 201466077 201467110 -26057468 + L1ME3A LINE L1 4039 5230 -916 631 116 0 0 chr3 201467137 201467276 -26057302 - AluSc SINE Alu 0 334 196 1831 249 94 52 chr3 201467289 201468076 -26056502 + L1ME3A LINE L1 5295 6114 -56 2115 173 33 36 chr3 201468079 201468632 -26055946 - MLT2A2 LTR ERVL 0 554 1 21 36 0 0 chr3 201468880 201468908 -26055670 + AT_rich Low_complexity Low_complexity 1 28 0 1891 104 7 35 chr3 201471864 201472195 -26052383 - AluSg SINE Alu 0 323 1 21 57 0 0 chr3 201472385 201472420 -26052158 + AT_rich Low_complexity Low_complexity 1 35 0 308 158 13 237 chr3 201472936 201473088 -26051490 - MER92A LTR ERV1 -3 409 292 3303 202 28 53 chr3 201473109 201474006 -26050572 - L1MD1 LINE L1 -92 6150 5277 2105 187 0 8 chr3 201474006 201474396 -26050182 - MLT1B LTR MaLR 0 390 4 769 201 182 85 chr3 201474409 201474495 -26050083 + MLT1A1 LTR MaLR 4 80 -285 1764 127 51 38 chr3 201474495 201474787 -26049791 + AluSx SINE Alu 1 296 -16 769 201 182 85 chr3 201474787 201475028 -26049550 + MLT1A1 LTR MaLR 80 365 0 478 245 36 0 chr3 201475032 201475171 -26049407 - L1MD1 LINE L1 -893 5253 5110 * 860 256 57 38 chr3 201475150 201475521 -26049057 - L1MD1 LINE L1 -2165 3981 3604 21 36 0 0 chr3 201475809 201475837 -26048741 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr3 201476346 201476379 -26048199 + AT_rich Low_complexity Low_complexity 1 33 0 371 333 60 49 chr3 201476973 201477321 -26047257 + MLT1K LTR MaLR 237 588 0 182 259 56 0 chr3 201477851 201477905 -26046673 + MIR SINE MIR 138 194 -68 1262 208 7 3 chr3 201478391 201478675 -26045903 + L1MC4 LINE L1 6806 7090 -952 953 231 84 10 chr3 201478695 201478993 -26045585 + L1MC4 LINE L1 7261 7580 -462 4274 127 64 43 chr3 201479002 201480376 -26044202 - pTR5 LTR ERV1 0 2438 745 439 234 83 54 chr3 201480376 201480581 -26043997 + L1MC4a LINE L1 7502 7712 -96 3777 87 16 48 chr3 201480655 201480919 -26043659 + L1PB1 LINE L1 5559 5830 -321 240 111 0 0 chr3 201480919 201480955 -26043623 + (TA)n Simple_repeat Simple_repeat 2 37 0 3777 87 16 48 chr3 201480955 201481301 -26043277 + L1PB1 LINE L1 5830 6150 -1 205 322 0 0 chr3 201483020 201483079 -26041499 - L2 LINE L2 -1396 1918 1860 1453 117 8 16 chr3 201483107 201483354 -26041224 + L1MA5A LINE L1 6053 6297 0 655 320 116 43 chr3 201483530 201484074 -26040504 - L2 LINE L2 -4 3309 2734 1958 242 84 81 chr3 201484115 201486081 -26038497 - L1ME3 LINE L1 -55 6107 4128 1348 311 99 41 chr3 201486085 201486866 -26037712 - L2 LINE L2 -571 2743 1918 8461 153 21 12 chr3 201489208 201491799 -26032779 + L1MA5A LINE L1 3654 6274 -23 29 0 0 0 chr3 201491799 201491828 -26032750 + AT_rich Low_complexity Low_complexity 1 29 0 894 234 31 13 chr3 201493097 201493324 -26031254 - MLT1C LTR MaLR 0 467 237 193 375 26 26 chr3 201493387 201493539 -26031039 - L2 LINE L2 -455 2859 2708 57 75 0 0 chr3 201493730 201493850 -26030728 + AT_rich Low_complexity Low_complexity 1 120 0 195 184 0 0 chr3 201494809 201494847 -26029731 + (TG)n Simple_repeat Simple_repeat 2 39 0 446 341 37 0 chr3 201495262 201495426 -26029152 + MIR3 SINE MIR 33 202 -6 24 0 0 0 chr3 201495526 201495550 -26029028 + AT_rich Low_complexity Low_complexity 1 24 0 860 345 152 12 chr3 201495593 201496191 -26028387 - L3 LINE CR1 -50 1527 846 668 203 14 22 chr3 201498323 201498461 -26026117 + MIR SINE MIR 15 151 -111 287 296 22 30 chr3 201498749 201498884 -26025694 - LTR37B LTR ERV1 -329 139 6 213 222 0 95 chr3 201498910 201498973 -26025605 + MIR SINE MIR 191 247 -15 227 149 0 64 chr3 201499233 201499280 -26025298 - MLT2B3 LTR ERVL -8 546 503 648 111 26 0 chr3 201499280 201499397 -26025181 + (TAGA)n Simple_repeat Simple_repeat 4 123 0 2677 199 34 21 chr3 201499399 201499719 -26024859 - MLT2B3 LTR ERVL -20 534 203 592 63 13 0 chr3 201499719 201499798 -26024780 - MADE1 DNA Mariner 0 80 1 2677 199 34 21 chr3 201499798 201500004 -26024574 - MLT2B3 LTR ERVL -351 203 1 22 0 0 0 chr3 201500130 201500152 -26024426 + AT_rich Low_complexity Low_complexity 1 22 0 406 291 33 31 chr3 201500662 201500849 -26023729 - MIR SINE MIR -51 157 2 225 229 69 78 chr3 201501118 201501306 -26023272 + MIR SINE MIR 6 249 -13 180 0 0 0 chr3 201501570 201501590 -26022988 + (CAT)n Simple_repeat Simple_repeat 2 21 0 2768 10 0 0 chr3 201502116 201502423 -26022155 + AluY SINE Alu 1 307 -4 457 275 49 28 chr3 201502759 201502901 -26021677 - MIR3 SINE MIR -55 153 9 248 254 28 0 chr3 201503350 201503421 -26021157 + L1MC4 LINE L1 6631 6703 -1339 243 269 0 0 chr3 201503377 201503444 -26021134 - L1MC4 LINE L1 -1339 6703 6637 * 206 243 221 29 chr3 201504791 201504931 -26019647 + MIR SINE MIR 20 186 -76 22 0 0 0 chr3 201504997 201505019 -26019559 + AT_rich Low_complexity Low_complexity 1 22 0 213 159 0 0 chr3 201505555 201505599 -26018979 + (TTA)n Simple_repeat Simple_repeat 3 46 0 32 95 0 0 chr3 201505978 201506073 -26018505 + AT_rich Low_complexity Low_complexity 1 95 0 748 160 7 40 chr3 201506398 201506548 -26018030 + L1PA16 LINE L1 6021 6165 -1 25 0 0 0 chr3 201507907 201507932 -26016646 + AT_rich Low_complexity Low_complexity 1 25 0 943 309 83 46 chr3 201508077 201508516 -26016062 + L2 LINE L2 2235 2703 -611 1861 130 47 13 chr3 201508516 201508817 -26015761 - AluSx SINE Alu -1 311 1 943 309 83 46 chr3 201508817 201508966 -26015612 + L2 LINE L2 2703 2845 -469 279 218 39 0 chr3 201508986 201509064 -26015514 - MER53 DNA DNA -86 103 23 * 323 231 13 0 chr3 201508997 201509075 -26015503 + MER53 DNA DNA 110 188 -1 259 309 37 0 chr3 201509370 201509451 -26015127 + L2 LINE L2 3176 3259 -13 281 316 102 28 chr3 201509945 201510122 -26014456 + MIR SINE MIR 2 191 -71 575 310 23 28 chr3 201510323 201510435 -26014143 - Charlie8 DNA MER1_type -65 276 164 1247 159 68 88 chr3 201510435 201510743 -26013835 - AluJb SINE Alu 0 302 1 575 310 23 28 chr3 201510743 201510846 -26013732 - Charlie8 DNA MER1_type -177 164 62 314 231 167 19 chr3 201511950 201512058 -26012520 - MER110 LTR ERV1 -70 421 298 180 0 0 0 chr3 201512060 201512080 -26012498 + (T)n Simple_repeat Simple_repeat 1 20 0 1260 80 263 24 chr3 201512080 201512331 -26012247 - Tigger3b DNA MER2_type -590 641 331 1449 40 0 0 chr3 201512335 201512512 -26012066 - L1PA4 LINE L1 -2 6153 5977 544 288 72 22 chr3 201512578 201512800 -26011778 - MER110 LTR ERV1 -258 233 1 277 283 38 47 chr3 201513246 201513352 -26011226 - MIR3 SINE MIR -31 177 73 3085 133 20 4 chr3 201513800 201514289 -26010289 + LOR1a LTR ERV1 1 497 0 22 56 0 0 chr3 201514978 201515014 -26009564 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 201515479 201515500 -26009078 + AT_rich Low_complexity Low_complexity 1 21 0 1847 172 0 13 chr3 201515806 201516120 -26008458 + AluJb SINE Alu 1 310 -2 665 212 61 18 chr3 201516168 201516333 -26008245 + MER45R DNA AcHobo 1408 1579 -2 1047 321 29 49 chr3 201516335 201516615 -26007963 + MER110-int LTR ERV1 4067 4351 -296 1707 218 25 80 chr3 201516615 201517165 -26007413 + MLT2B1 LTR ERVL 1 520 0 1047 321 29 49 chr3 201517165 201517473 -26007105 + MER110-int LTR ERV1 4351 4643 -4 597 326 56 35 chr3 201517768 201518087 -26006491 + MER110 LTR ERV1 166 491 0 508 169 63 48 chr3 201518452 201518645 -26005933 - L1 LINE L1 -816 5330 5125 2116 94 3 0 chr3 201519281 201519568 -26005010 - AluSg SINE Alu 0 310 23 831 209 16 11 chr3 201520384 201520571 -26004007 - MER5A DNA MER1_type -1 188 1 207 0 0 0 chr3 201520752 201520775 -26003803 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 340 395 27 0 chr3 201520945 201521092 -26003486 + MIR SINE MIR 2 152 -110 525 268 108 92 chr3 201521103 201521472 -26003106 - MLT1J2 LTR MaLR -3 447 73 213 293 0 0 chr3 201521556 201521614 -26002964 + MIR SINE MIR 159 216 -46 2058 125 3 3 chr3 201521749 201522046 -26002532 + AluSq SINE Alu 1 297 -16 978 269 81 96 chr3 201522165 201522882 -26001696 - L1MC5 LINE L1 -65 7896 7206 1861 150 3 0 chr3 201522882 201523169 -26001409 - AluSx SINE Alu -15 297 10 978 269 81 96 chr3 201523169 201523753 -26000825 - L1MC5 LINE L1 -755 7206 6615 * 1880 250 23 14 chr3 201523741 201524377 -26000201 - L1M4 LINE L1 -3414 3543 2899 260 252 54 18 chr3 201524395 201524506 -26000072 - L1M4 LINE L1 -6653 206 92 311 276 158 13 chr3 201524800 201524952 -25999626 + MIR SINE MIR 78 251 -11 23 92 0 0 chr3 201525125 201525190 -25999388 + AT_rich Low_complexity Low_complexity 1 65 0 22 35 0 0 chr3 201525624 201525653 -25998925 + AT_rich Low_complexity Low_complexity 1 29 0 217 254 0 0 chr3 201525702 201525757 -25998821 + A-rich Low_complexity Low_complexity 1 55 0 398 293 75 40 chr3 201526923 201527097 -25997481 - MIR SINE MIR -71 191 12 233 337 40 16 chr3 201527133 201527276 -25997302 + MIR SINE MIR 40 184 -67 4666 209 42 8 chr3 201527400 201528788 -25995790 - L1MC2 LINE L1 -12 6332 4901 241 214 67 22 chr3 201529580 201529669 -25994909 - MLT1L LTR MaLR -6 609 517 269 268 31 43 chr3 201529832 201529959 -25994619 - MLT1L LTR MaLR -305 141 54 849 185 20 0 chr3 201530186 201530337 -25994241 - FRAM SINE Alu -21 155 2 214 339 113 24 chr3 201530451 201530619 -25993959 + L2 LINE L2 2561 2743 -571 278 243 43 0 chr3 201531119 201531189 -25993389 + L2 LINE L2 3227 3299 -14 422 229 34 0 chr3 201531713 201531827 -25992751 - MIR SINE MIR -59 149 30 1080 269 31 13 chr3 201531870 201532239 -25992339 + MLT2E LTR ERVL 1 477 -151 1810 109 33 4 chr3 201532239 201532515 -25992063 + AluSx SINE Alu 21 304 -8 1080 269 31 13 chr3 201532515 201532670 -25991908 + MLT2E LTR ERVL 477 628 0 347 349 20 102 chr3 201533755 201534050 -25990528 - L2 LINE L2 -12 3260 2990 677 214 10 62 chr3 201534081 201534268 -25990310 - LOR1b LTR ERV1 0 461 285 9028 115 13 7 chr3 201534268 201534440 -25990138 - HSMAR1 DNA Mariner 0 1287 1118 1720 196 18 9 chr3 201534440 201534776 -25989802 - MER61A LTR ERV1 0 343 5 9028 115 13 7 chr3 201534776 201535882 -25988696 - HSMAR1 DNA Mariner -169 1118 1 394 255 43 62 chr3 201535971 201536132 -25988446 - LOR1b LTR ERV1 -189 272 115 616 224 19 6 chr3 201536202 201536363 -25988215 - MER53 DNA DNA -26 163 1 732 230 47 77 chr3 201536431 201536590 -25987988 + MLT1B LTR MaLR 20 100 -290 2287 76 7 0 chr3 201536590 201536892 -25987686 + AluY SINE Alu 1 304 -7 732 230 47 77 chr3 201536892 201536967 -25987611 + MLT1B LTR MaLR 100 176 -214 706 200 14 0 chr3 201537410 201537587 -25986991 - AluJb SINE Alu 0 313 135 223 282 28 0 chr3 201538598 201538669 -25985909 - MER5A DNA MER1_type -2 187 115 180 196 109 0 chr3 201538693 201538739 -25985839 + L2 LINE L2 1656 1706 -1608 28 71 0 0 chr3 201539530 201539586 -25984992 + AT_rich Low_complexity Low_complexity 1 56 0 35 88 0 0 chr3 201539851 201539942 -25984636 + AT_rich Low_complexity Low_complexity 1 91 0 296 262 59 78 chr3 201540190 201540461 -25984117 + L1MC4a LINE L1 3429 3694 -2452 307 219 35 26 chr3 201540565 201540679 -25983899 + L1MC4a LINE L1 3895 4009 -2137 478 289 118 17 chr3 201540827 201541294 -25983284 + L1MC4a LINE L1 4186 4699 -1447 233 289 74 54 chr3 201541568 201541810 -25982768 + MLT1J1 LTR MaLR 96 342 -104 405 0 0 0 chr3 201541873 201541918 -25982660 + (TA)n Simple_repeat Simple_repeat 1 45 0 554 288 103 70 chr3 201542010 201542345 -25982233 + L1MC4a LINE L1 5100 5423 -723 2891 3 0 0 chr3 201542345 201542656 -25981922 + AluYa5 SINE Alu 1 311 0 554 288 103 70 chr3 201542656 201542795 -25981783 + L1MC4a LINE L1 5423 5114 -1032 2271 117 0 0 chr3 201542795 201543102 -25981476 + AluSx SINE Alu 2 308 -4 554 288 103 70 chr3 201543102 201543387 -25981191 + L1MC4a LINE L1 5113 5387 -759 336 262 27 13 chr3 201543400 201543549 -25981029 + (TA)n Simple_repeat Simple_repeat 2 152 0 584 310 83 16 chr3 201543992 201544305 -25980273 + HsTC2 DNA Tc2 538 871 -1027 858 254 58 32 chr3 201544571 201544918 -25979660 + L2 LINE L2 2881 3313 0 2302 103 3 0 chr3 201545040 201545341 -25979237 + AluSp SINE Alu 1 302 -11 661 232 157 5 chr3 201545804 201546149 -25978429 - LTR33A LTR ERVL -20 503 55 180 0 0 0 chr3 201547235 201547255 -25977323 + (A)n Simple_repeat Simple_repeat 1 20 0 511 205 247 12 chr3 201549425 201549591 -25974987 - MIR SINE MIR -22 240 36 2648 178 64 30 chr3 201549599 201550133 -25974445 - MLT2B3 LTR ERVL 0 554 3 341 93 19 0 chr3 201550213 201550267 -25974311 + (TC)n Simple_repeat Simple_repeat 2 56 0 1145 258 46 22 chr3 201550431 201550800 -25973778 + LTR16B LTR ERVL 7 384 -80 1282 129 17 17 chr3 201550856 201551088 -25973490 - L1MA8 LINE L1 -16 6275 6044 1768 152 52 33 chr3 201551337 201551705 -25972873 + THE1C LTR MaLR 1 375 0 259 133 0 100 chr3 201552792 201552852 -25971726 - L1 LINE L1 -1265 4881 4828 3467 185 33 7 chr3 201552866 201553592 -25970986 + L1MA8 LINE L1 5544 6288 -3 424 235 11 28 chr3 201554247 201554426 -25970152 + (TA)n Simple_repeat Simple_repeat 2 177 0 189 197 0 0 chr3 201554499 201554560 -25970018 + (TA)n Simple_repeat Simple_repeat 2 62 0 297 128 0 0 chr3 201554595 201554642 -25969936 + (CA)n Simple_repeat Simple_repeat 2 48 0 211 143 24 0 chr3 201554657 201554699 -25969879 + (TA)n Simple_repeat Simple_repeat 2 44 0 189 344 33 0 chr3 201555181 201555242 -25969336 + L2 LINE L2 3128 3190 -82 180 324 29 0 chr3 201555383 201555451 -25969127 + L2 LINE L2 2734 2803 -511 477 317 21 0 chr3 201555949 201556094 -25968484 + MIR SINE MIR 65 212 -50 22 0 0 0 chr3 201556125 201556147 -25968431 + AT_rich Low_complexity Low_complexity 1 22 0 37 23 0 0 chr3 201558223 201558267 -25966311 + AT_rich Low_complexity Low_complexity 1 44 0 1581 120 0 0 chr3 201558321 201558530 -25966048 - AluSg/x SINE Alu -18 292 84 294 29 0 0 chr3 201559610 201559645 -25964933 + (TC)n Simple_repeat Simple_repeat 2 36 0 570 297 73 14 chr3 201559822 201560041 -25964537 - MIR SINE MIR 0 262 31 2594 89 19 0 chr3 201560051 201560423 -25964155 - L1PA13 LINE L1 0 6163 5785 1579 74 8 57 chr3 201560430 201560674 -25963904 - L1PA10 LINE L1 -2 6166 5935 461 188 70 23 chr3 201560965 201561169 -25963409 + MSTA LTR MaLR 87 349 -77 24 32 0 0 chr3 201561429 201561460 -25963118 + AT_rich Low_complexity Low_complexity 1 31 0 1868 15 0 0 chr3 201561534 201561737 -25962841 + AluY SINE Alu 1 203 -108 584 67 0 0 chr3 201561737 201561812 -25962766 + AluYb8 SINE Alu 128 202 -116 1522 40 0 0 chr3 201561812 201561987 -25962591 + AluY SINE Alu 127 301 -10 383 306 8 60 chr3 201562217 201562351 -25962227 - L2 LINE L2 0 3272 3146 25 31 0 0 chr3 201563441 201563473 -25961105 + AT_rich Low_complexity Low_complexity 1 32 0 305 255 143 12 chr3 201563912 201564073 -25960505 - L1M4 LINE L1 -1549 4597 4416 536 251 90 78 chr3 201564191 201564446 -25960132 + MLT1D LTR MaLR 14 271 -234 * 717 128 0 0 chr3 201564443 201564552 -25960026 + MLT1D LTR MaLR 395 503 -2 302 296 65 54 chr3 201564573 201564660 -25959918 - L1M4 LINE L1 -1858 4288 4203 1378 196 63 21 chr3 201564660 201564945 -25959633 + AluSx SINE Alu 2 298 -14 302 296 65 54 chr3 201564945 201565043 -25959535 - L1M4 LINE L1 -1943 4203 4101 294 190 0 0 chr3 201565204 201565262 -25959316 + L2 LINE L2 2282 2339 -975 43050 45 4 7 chr3 201565287 201571430 -25953148 - L1PA5 LINE L1 -16 6138 18 1318 302 135 24 chr3 201571431 201572303 -25952275 + L2 LINE L2 2325 3304 -9 21 36 0 0 chr3 201572784 201572812 -25951766 + AT_rich Low_complexity Low_complexity 1 28 0 2002 126 31 0 chr3 201572837 201573123 -25951455 - AluSx SINE Alu -17 295 1 302 318 112 6 chr3 201573600 201573779 -25950799 - L1MDa LINE L1 -4439 2101 1904 270 255 64 37 chr3 201573992 201574180 -25950398 + L1ME3 LINE L1 913 1105 -5014 2237 116 51 20 chr3 201574244 201574597 -25949981 + THE1B LTR MaLR 1 364 0 11318 92 17 3 chr3 201574597 201576154 -25948424 + THE1B-int LTR MaLR 1 1580 0 2253 116 48 20 chr3 201576155 201576508 -25948070 + THE1B LTR MaLR 2 364 0 453 277 102 98 chr3 201578642 201578967 -25945611 + L1ME LINE L1 5486 5811 -351 289 314 17 8 chr3 201579030 201579148 -25945430 + (CATATA)n Simple_repeat Simple_repeat 4 122 0 278 246 0 15 chr3 201581873 201581938 -25942640 + (TG)n Simple_repeat Simple_repeat 2 65 0 616 264 149 3 chr3 201581942 201582324 -25942254 + L1ME3 LINE L1 2580 3017 -3112 1019 276 62 6 chr3 201582380 201582908 -25941670 + L1ME3 LINE L1 3121 3678 -2451 371 307 98 3 chr3 201582977 201583273 -25941305 + L1ME3 LINE L1 4459 4782 -1347 635 262 100 52 chr3 201583355 201584034 -25940544 + L1ME3 LINE L1 4941 5655 -498 6457 129 20 33 chr3 201584054 201585167 -25939411 + Tigger1 DNA MER2_type 1 1098 -1320 2064 201 15 78 chr3 201585167 201585406 -25939172 + MLT2B3 LTR ERVL 1 189 -365 297 0 0 0 chr3 201585406 201585439 -25939139 + (TC)n Simple_repeat Simple_repeat 1 33 0 2064 201 15 78 chr3 201585439 201585737 -25938841 + MLT2B3 LTR ERVL 189 504 -50 516 32 0 0 chr3 201585742 201585804 -25938774 + (CA)n Simple_repeat Simple_repeat 2 63 0 7244 143 30 7 chr3 201585811 201586901 -25937677 + Tigger1 DNA MER2_type 1152 2275 -143 2113 182 87 11 chr3 201586901 201587374 -25937204 - LTR22 LTR ERVK 0 509 1 7244 143 30 7 chr3 201587374 201587509 -25937069 + Tigger1 DNA MER2_type 2275 2405 -13 480 253 123 63 chr3 201587535 201587605 -25936973 + L1ME3 LINE L1 5681 5745 -408 1485 230 62 29 chr3 201587605 201588057 -25936521 - MLT1C LTR MaLR 0 467 1 480 253 123 63 chr3 201588057 201588286 -25936292 + L1ME3 LINE L1 5745 5998 -155 331 191 45 34 chr3 201588291 201588380 -25936198 + L1ME3 LINE L1 6032 6121 -24 24 53 0 0 chr3 201588614 201588652 -25935926 + AT_rich Low_complexity Low_complexity 1 38 0 1305 240 54 33 chr3 201588709 201589828 -25934750 - L1ME1 LINE L1 -5 6161 5001 677 100 0 0 chr3 201589854 201589944 -25934634 - L1PA7 LINE L1 -27 6127 6038 1562 100 5 0 chr3 201590236 201590436 -25934142 - AluSp SINE Alu -110 203 3 11191 208 33 18 chr3 201590438 201593194 -25931384 - L1 LINE L1 -1155 4991 2194 25 0 0 0 chr3 201593892 201593917 -25930661 + AT_rich Low_complexity Low_complexity 1 25 0 292 237 53 0 chr3 201594123 201594199 -25930379 + MIR SINE MIR 117 196 -66 711 196 7 0 chr3 201594784 201594932 -25929646 + L1MB7 LINE L1 6026 6174 -10 366 309 64 27 chr3 201595060 201595248 -25929330 + MIR SINE MIR 68 262 0 24 32 0 0 chr3 201595881 201595912 -25928666 + AT_rich Low_complexity Low_complexity 1 31 0 271 335 49 37 chr3 201595983 201596187 -25928391 - MIR SINE MIR -16 246 38 14757 203 42 8 chr3 201596487 201596844 -25927734 - L1PB1 LINE L1 0 6867 6523 529 82 10 20 chr3 201596844 201596942 -25927636 + (TAGA)n Simple_repeat Simple_repeat 2 98 0 14757 203 42 8 chr3 201596942 201603066 -25921512 - L1PB1 LINE L1 -344 6523 6 1994 89 3 21 chr3 201603260 201603542 -25921036 - L1PA8A LINE L1 0 6131 5855 1816 172 7 0 chr3 201604119 201604421 -25920157 + AluJo SINE Alu 1 304 -8 470 271 127 34 chr3 201604572 201605578 -25919000 + HAL1b LINE L1 109 1251 -97 2477 72 3 0 chr3 201605578 201605882 -25918696 + AluSp SINE Alu 1 305 -8 470 271 127 34 chr3 201605882 201605927 -25918651 + HAL1b LINE L1 1251 1290 -58 440 292 6 29 chr3 201606320 201606491 -25918087 + GA-rich Low_complexity Low_complexity 1 167 0 1537 205 0 31 chr3 201607073 201607395 -25917183 - AluJb SINE Alu 0 312 1 186 333 0 0 chr3 201607478 201607523 -25917055 - L2 LINE L2 -15 3257 3213 910 240 66 88 chr3 201607553 201607869 -25916709 + MLT2B1 LTR ERVL 167 476 -44 532 86 11 11 chr3 201607869 201607962 -25916616 + (TCTA)n Simple_repeat Simple_repeat 1 93 0 910 240 66 88 chr3 201607962 201608007 -25916571 + MLT2B1 LTR ERVL 476 520 0 253 235 112 0 chr3 201608147 201608245 -25916333 - MER5A DNA MER1_type -77 112 4 413 281 62 45 chr3 201610190 201610368 -25914210 - MIR SINE MIR -6 256 76 357 263 197 3 chr3 201610509 201610798 -25913780 - L1ME4a LINE L1 -3 6118 5774 235 358 134 8 chr3 201610893 201611027 -25913551 + MIR3 SINE MIR 58 208 0 198 71 0 0 chr3 201611578 201611606 -25912972 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 2361 137 72 8 chr3 201613258 201613660 -25910918 + MSTA LTR MaLR 1 428 0 247 228 228 0 chr3 201614581 201614708 -25909870 - L1ME4a LINE L1 -5 6116 5961 359 163 12 0 chr3 201615144 201615224 -25909354 + CT-rich Low_complexity Low_complexity 2 82 0 2011 143 32 40 chr3 201615680 201616058 -25908520 - THE1C LTR MaLR 0 375 1 204 263 79 53 chr3 201618533 201618609 -25905969 + L2 LINE L2 3170 3247 -25 32 43 0 0 chr3 201618639 201618685 -25905893 + AT_rich Low_complexity Low_complexity 1 46 0 1439 187 40 107 chr3 201618976 201619318 -25905260 - MLT1A1 LTR MaLR 0 365 61 2140 105 3 3 chr3 201619318 201619612 -25904966 - AluSp SINE Alu -17 296 3 1439 187 40 107 chr3 201619612 201619670 -25904908 - MLT1A1 LTR MaLR -304 61 1 26 30 0 0 chr3 201619902 201619935 -25904643 + AT_rich Low_complexity Low_complexity 1 33 0 2254 153 49 40 chr3 201620564 201621033 -25903545 - MER31A LTR ERV1 0 485 13 2199 104 3 10 chr3 201621411 201621709 -25902869 - AluSx SINE Alu -14 298 3 1486 116 58 0 chr3 201621788 201622029 -25902549 + L1MA4A LINE L1 6045 6299 -4 33 43 0 0 chr3 201622055 201622102 -25902476 + AT_rich Low_complexity Low_complexity 1 47 0 230 254 15 15 chr3 201622502 201622569 -25902009 + GA-rich Low_complexity Low_complexity 5 71 0 688 232 153 0 chr3 201622588 201622765 -25901813 - MIR SINE MIR -28 234 31 1880 205 142 51 chr3 201622873 201623463 -25901115 - LTR9B LTR ERV1 0 644 1 52691 142 18 5 chr3 201623464 201631535 -25893043 - HUERS-P3 LTR ERV1 0 8919 750 3001 214 22 25 chr3 201631569 201632204 -25892374 - HUERS-P3 LTR ERV1 -8286 633 1 2294 174 144 38 chr3 201632205 201632787 -25891791 - LTR9B LTR ERV1 0 644 1 468 321 36 0 chr3 201633008 201633148 -25891430 + HAL1 LINE L1 743 887 -1620 216 0 0 0 chr3 201633157 201633181 -25891397 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 2351 245 45 20 chr3 201633271 201633291 -25891287 + L1ME1 LINE L1 4727 4745 -1421 1737 185 4 0 chr3 201633291 201633602 -25890976 + AluJb SINE Alu 1 312 0 2351 245 45 20 chr3 201633602 201634836 -25889742 + L1ME1 LINE L1 4745 6002 -164 2293 224 41 7 chr3 201634973 201635561 -25889017 + L1MC3 LINE L1 7169 7776 -9 296 283 7 22 chr3 201635575 201635713 -25888865 + HAL1b LINE L1 1210 1345 -3 390 294 52 33 chr3 201635978 201636189 -25888389 - MLT1H LTR MaLR -288 261 47 216 265 26 68 chr3 201636740 201636857 -25887721 + MIR SINE MIR 101 212 -50 22 0 0 0 chr3 201636890 201636912 -25887666 + AT_rich Low_complexity Low_complexity 1 22 0 2741 156 17 8 chr3 201637609 201638089 -25886489 - LTR29 LTR ERV1 -2 620 137 613 257 20 59 chr3 201638819 201639021 -25885557 - LTR26 LTR ERV1 -14 589 396 4666 227 13 3 chr3 201639208 201640310 -25884268 + L1 LINE L1 3348 4460 -1686 722 249 0 11 chr3 201640655 201640844 -25883734 - L1PB1 LINE L1 -166 5985 5799 526 129 40 0 chr3 201640846 201640947 -25883631 + GA-rich Low_complexity Low_complexity 2 106 0 199 257 46 92 chr3 201641748 201641857 -25882721 + MIR3 SINE MIR 11 114 -94 308 297 50 0 chr3 201641857 201641958 -25882620 + MIR SINE MIR 157 262 0 233 224 20 0 chr3 201642333 201642382 -25882196 + L2 LINE L2 3245 3294 -19 373 369 0 0 chr3 201642394 201642516 -25882062 - L2 LINE L2 -5 3308 3187 1495 195 14 7 chr3 201642685 201642962 -25881616 + AluJo SINE Alu 11 289 -23 369 125 0 0 chr3 201643081 201643145 -25881433 - Tigger1 DNA MER2_type -158 2260 2197 11599 163 47 43 chr3 201643147 201646299 -25878279 + L1M1 LINE L1 18 3156 -4409 1616 168 18 14 chr3 201646299 201646584 -25877994 + AluSx SINE Alu 1 286 -26 11599 163 47 43 chr3 201646584 201646713 -25877865 + L1M1 LINE L1 3156 3283 -4282 230 0 0 32 chr3 201646713 201646744 -25877834 + (TAA)n Simple_repeat Simple_repeat 3 32 0 11599 163 47 43 chr3 201646744 201648370 -25876208 + L1M1 LINE L1 3283 5606 -1959 458 298 19 6 chr3 201649866 201650024 -25874554 - MER69A DNA AcHobo 0 177 18 590 269 46 11 chr3 201650209 201650384 -25874194 + MIR SINE MIR 8 188 -74 4681 165 121 6 chr3 201650395 201651424 -25873154 + L1PB1 LINE L1 3 1149 -5714 9143 174 80 11 chr3 201651436 201653816 -25870762 + L1PB1 LINE L1 1311 3907 -2955 21 0 0 0 chr3 201654088 201654109 -25870469 + AT_rich Low_complexity Low_complexity 1 21 0 1066 298 62 43 chr3 201654460 201654994 -25869584 - LTR26 LTR ERV1 -59 544 1 295 294 137 0 chr3 201654994 201655140 -25869438 + MIR SINE MIR 58 223 -39 1349 138 43 10 chr3 201656469 201656905 -25867673 - LTR54 LTR ERV1 0 510 1 428 289 0 31 chr3 201656978 201657106 -25867472 + MIR3 SINE MIR 84 207 -1 260 176 189 0 chr3 201658697 201658771 -25865807 - MER5C DNA MER1_type -236 88 1 2097 171 16 11 chr3 201660846 201661215 -25863363 - MSTB LTR MaLR -53 373 3 297 276 41 31 chr3 201661319 201661427 -25863151 - MER5A DNA MER1_type 0 189 70 5583 161 23 10 chr3 201661786 201663269 -25861309 + L1PB1 LINE L1 5362 6861 -6 188 361 56 37 chr3 201664758 201664866 -25859712 - L2 LINE L2 -1 3271 3162 1308 244 100 46 chr3 201664899 201665467 -25859111 + MLT1E2 LTR MaLR 1 624 0 1107 239 119 23 chr3 201665604 201666063 -25858515 + L1ME1 LINE L1 5639 6137 -29 1856 187 0 0 chr3 201666282 201666576 -25858002 + AluJo SINE Alu 1 294 -18 2100 72 65 3 chr3 201666647 201666939 -25857639 - L1PA7 LINE L1 -8 6146 5837 2710 88 3 0 chr3 201667683 201668037 -25856541 - THE1A LTR MaLR 0 355 1 10627 96 17 10 chr3 201668041 201669599 -25854979 - THE1A-int LTR MaLR -11 1569 1 2728 66 20 0 chr3 201669599 201669947 -25854631 - THE1A LTR MaLR 0 355 1 535 305 64 69 chr3 201670568 201671227 -25853351 + L2 LINE L2 2619 3264 -8 280 227 295 27 chr3 201672041 201672336 -25852242 + HAL1 LINE L1 2062 2435 -72 775 211 76 162 chr3 201672369 201673208 -25851370 - LTR41 LTR ERVL -6 767 1 1639 156 68 26 chr3 201673345 201673697 -25850881 - THE1C LTR MaLR 0 375 9 344 274 153 4 chr3 201674540 201674709 -25849869 + MIR SINE MIR 3 204 -56 198 300 0 17 chr3 201674872 201674932 -25849646 + L2 LINE L2 3251 3309 -4 198 321 143 27 chr3 201675434 201675546 -25849032 + MIR SINE MIR 26 150 -112 306 222 0 0 chr3 201676107 201676170 -25848408 + MIR SINE MIR 174 236 -26 360 331 28 0 chr3 201676389 201676534 -25848044 + MIR3 SINE MIR 49 197 -11 237 359 92 7 chr3 201678207 201678349 -25846229 + MIR SINE MIR 46 199 -63 210 271 51 0 chr3 201678400 201678459 -25846119 - MIR SINE MIR -66 142 81 26 0 0 0 chr3 201678552 201678578 -25846000 + AT_rich Low_complexity Low_complexity 1 26 0 645 154 41 16 chr3 201678578 201678701 -25845877 - FLAM_C SINE Alu -17 126 1 225 277 64 21 chr3 201678706 201678800 -25845778 + MER5A DNA MER1_type 47 144 -45 23 0 0 0 chr3 201679048 201679071 -25845507 + AT_rich Low_complexity Low_complexity 1 23 0 682 269 230 0 chr3 201679414 201679671 -25844907 - L2 LINE L2 -492 2822 2507 221 140 80 0 chr3 201679794 201679844 -25844734 + (TATAA)n Simple_repeat Simple_repeat 2 55 0 648 251 148 27 chr3 201681876 201682099 -25842479 - MIR SINE MIR -4 258 9 8591 57 2 5 chr3 201684402 201685476 -25839102 + MER11C LTR ERVK 1 1071 0 1266 26 7 0 chr3 201685485 201685640 -25838938 - MER11B LTR ERVK -1080 156 1 286 339 66 0 chr3 201689949 201690070 -25834508 + MIR SINE MIR 24 152 -110 2369 63 0 3 chr3 201690219 201690506 -25834072 + AluY SINE Alu 25 310 -1 25 65 0 0 chr3 201690809 201690855 -25833723 + AT_rich Low_complexity Low_complexity 1 46 0 616 244 29 41 chr3 201691130 201691302 -25833276 - MER5B DNA MER1_type -8 170 1 2431 97 0 0 chr3 201692389 201692698 -25831880 + AluSc SINE Alu 1 309 0 257 167 64 64 chr3 201693111 201693189 -25831389 + MLT1K LTR MaLR 511 588 0 1355 196 27 27 chr3 201693518 201693814 -25830764 + AluJo SINE Alu 1 296 -16 28 79 0 0 chr3 201694758 201694821 -25829757 + AT_rich Low_complexity Low_complexity 1 63 0 737 186 221 6 chr3 201694882 201695054 -25829524 - MER3 DNA MER1_type 0 209 1 252 86 0 0 chr3 201696607 201696642 -25827936 + (TTTG)n Simple_repeat Simple_repeat 4 38 0 391 311 113 38 chr3 201697374 201697515 -25827063 + MIR SINE MIR 34 198 -64 1908 125 60 0 chr3 201697515 201697796 -25826782 + AluSg SINE Alu 1 298 -12 391 311 113 38 chr3 201697796 201697866 -25826712 + MIR SINE MIR 198 261 -1 360 324 17 40 chr3 201697913 201698086 -25826492 - L1MC/D LINE L1 -2144 5664 5496 521 315 39 11 chr3 201698086 201698264 -25826314 - MIR SINE MIR -61 201 19 698 189 14 35 chr3 201698809 201698952 -25825626 + MER97c DNA MER1_type? 39 178 -912 395 276 112 13 chr3 201701986 201702138 -25822440 + MER5A DNA MER1_type 1 167 -22 193 250 0 39 chr3 201702275 201702327 -25822251 - L2 LINE L2 -655 2659 2610 * 379 316 145 30 chr3 201702326 201702699 -25821879 + L2 LINE L2 1973 2388 -926 483 257 62 43 chr3 201703756 201703966 -25820612 - MIR SINE MIR -42 220 7 2434 223 14 41 chr3 201704529 201705113 -25819465 + L1ME LINE L1 1 568 -5974 2522 201 47 66 chr3 201705118 201705800 -25818778 + L1MB7 LINE L1 5500 6168 -16 423 310 5 48 chr3 201705891 201706078 -25818500 + MIR3 SINE MIR 26 204 -4 449 241 62 18 chr3 201706171 201706283 -25818295 - L2 LINE L2 -12 3301 3185 1672 194 3 0 chr3 201707166 201707454 -25817124 + AluJo SINE Alu 13 301 -11 623 311 81 25 chr3 201708466 201708826 -25815752 + L1ME LINE L1 895 1274 -5360 349 271 95 76 chr3 201708837 201709047 -25815531 + L1ME LINE L1 1322 1535 -5099 2409 77 0 0 chr3 201709270 201709569 -25815009 + AluY SINE Alu 4 302 -9 24 0 0 0 chr3 201709571 201709595 -25814983 + AT_rich Low_complexity Low_complexity 1 24 0 261 302 139 24 chr3 201709598 201710015 -25814563 + L1ME LINE L1 4881 5345 -1299 547 295 106 30 chr3 201710207 201710374 -25814204 + L1ME LINE L1 5483 5636 -1024 339 25 0 0 chr3 201710374 201710414 -25814164 + (CA)n Simple_repeat Simple_repeat 2 41 0 547 295 106 30 chr3 201710414 201710962 -25813616 + L1ME LINE L1 5636 6267 -393 467 254 18 0 chr3 201711012 201711122 -25813456 + MER33 DNA MER1_type 5 116 -208 1246 216 0 0 chr3 201712416 201712638 -25811940 - MER58A DNA MER1_type -1 223 2 200 281 35 0 chr3 201713444 201713501 -25811077 + MIR SINE MIR 44 102 -106 2298 104 0 7 chr3 201717174 201717472 -25807106 + AluSp SINE Alu 1 296 -17 2278 81 13 3 chr3 201717733 201718031 -25806547 + AluY SINE Alu 1 301 -10 2148 147 31 24 chr3 201718124 201718505 -25806073 + Tigger2a DNA MER2_type 1 384 -50 567 279 162 14 chr3 201718726 201718948 -25805630 + L3 LINE CR1 1305 1559 -18 455 294 68 63 chr3 201720289 201720682 -25803896 + HAL1b LINE L1 65 411 -937 3479 238 53 30 chr3 201720693 201721632 -25802946 + L1M3f LINE L1 1253 2213 -4352 285 152 197 0 chr3 201721635 201721701 -25802877 + L1M3f LINE L1 3519 3597 -3968 321 369 36 36 chr3 201721702 201721954 -25802624 + HAL1 LINE L1 1488 1739 -768 206 180 0 40 chr3 201722113 201722163 -25802415 + A-rich Low_complexity Low_complexity 6 53 0 2350 90 48 8 chr3 201722179 201722534 -25802044 + L1PB1 LINE L1 5783 6151 0 349 264 90 28 chr3 201723222 201723400 -25801178 + L1M4 LINE L1 5209 5397 -749 339 77 0 46 chr3 201723557 201723622 -25800956 + L1PB1 LINE L1 5981 6042 -109 1990 133 14 27 chr3 201723719 201724087 -25800491 + L1MA3 LINE L1 5943 6305 0 511 198 9 60 chr3 201724108 201724224 -25800354 + MLT1A1 LTR MaLR 85 194 -171 605 234 6 44 chr3 201724231 201724389 -25800189 + MLT1A1 LTR MaLR 162 313 -52 25 0 0 0 chr3 201724389 201724414 -25800164 + AT_rich Low_complexity Low_complexity 1 25 0 5914 57 18 3 chr3 201726338 201726367 -25798211 + L1PA7 LINE L1 5352 5379 -790 225 0 0 0 chr3 201726367 201726392 -25798186 + (TA)n Simple_repeat Simple_repeat 1 25 0 5914 57 18 3 chr3 201726392 201727168 -25797410 + L1PA7 LINE L1 5379 6169 0 386 74 0 0 chr3 201728010 201728064 -25796514 - MADE1 DNA Mariner 0 80 27 517 312 60 53 chr3 201728115 201728411 -25796167 + L2 LINE L2 1116 1418 -1896 2387 57 0 0 chr3 201728411 201728722 -25795856 + AluY SINE Alu 2 312 0 517 312 60 53 chr3 201728722 201728821 -25795757 + L2 LINE L2 1418 1515 -1799 1597 183 0 0 chr3 201729613 201729928 -25794650 - AluJb SINE Alu 0 328 14 243 303 74 25 chr3 201731761 201731883 -25792695 - MIR SINE MIR -132 130 3 2929 229 59 22 chr3 201732159 201733194 -25791384 + L1ME1 LINE L1 5031 6114 -52 21 0 0 0 chr3 201733254 201733275 -25791303 + AT_rich Low_complexity Low_complexity 1 21 0 203 162 0 27 chr3 201733314 201733351 -25791227 + GA-rich Low_complexity Low_complexity 1 36 0 24 77 0 0 chr3 201733795 201733847 -25790731 + AT_rich Low_complexity Low_complexity 1 52 0 21 0 0 0 chr3 201733910 201733931 -25790647 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 201734196 201734219 -25790359 + AT_rich Low_complexity Low_complexity 1 23 0 232 318 15 0 chr3 201735026 201735092 -25789486 + L2 LINE L2 3203 3269 -3 685 285 140 17 chr3 201735186 201735649 -25788929 + L1ME4a LINE L1 5508 6027 -94 461 258 16 0 chr3 201735788 201735916 -25788662 + MER90 LTR ERV1 206 335 -240 457 304 37 32 chr3 201735978 201736195 -25788383 + MER90 LTR ERV1 384 601 -13 347 227 0 25 chr3 201736201 201736320 -25788258 + (ATGGTG)n Simple_repeat Simple_repeat 2 117 0 598 317 24 6 chr3 201736437 201736604 -25787974 + MIR3 SINE MIR 3 172 -36 895 229 23 6 chr3 201736684 201736859 -25787719 + MER58A DNA MER1_type 37 214 -10 360 284 98 0 chr3 201736949 201737051 -25787527 + L2 LINE L2 3161 3272 0 740 157 0 22 chr3 201737621 201737755 -25786823 - FLAM_C SINE Alu -2 131 1 1871 160 11 42 chr3 201737790 201738146 -25786432 - MLT2D LTR ERVL -69 345 1 278 241 84 0 chr3 201739233 201739316 -25785262 - MLT1K LTR MaLR -3 585 496 195 379 0 0 chr3 201739616 201739682 -25784896 + L2 LINE L2 3247 3312 -1 290 337 0 0 chr3 201740112 201740213 -25784365 + (CATA)n Simple_repeat Simple_repeat 4 104 0 22 35 0 0 chr3 201740661 201740690 -25783888 + AT_rich Low_complexity Low_complexity 1 29 0 189 121 0 0 chr3 201741293 201741326 -25783252 + (TG)n Simple_repeat Simple_repeat 2 34 0 214 268 0 0 chr3 201741434 201741490 -25783088 + L2 LINE L2 3246 3301 -12 316 379 7 0 chr3 201741601 201741746 -25782832 - MIR SINE MIR -6 256 111 275 300 96 41 chr3 201741746 201742016 -25782562 + L2 LINE L2 2927 3211 -102 221 150 0 0 chr3 201742194 201742234 -25782344 - MIR SINE MIR -14 248 209 441 296 149 60 chr3 201742539 201743311 -25781267 - L2 LINE L2 -457 2857 1987 2077 106 0 50 chr3 201743648 201743969 -25780609 + AluSx SINE Alu 1 305 -7 180 0 0 0 chr3 201745480 201745500 -25779078 + (TA)n Simple_repeat Simple_repeat 2 21 0 353 291 66 16 chr3 201745503 201745685 -25778893 + MLT1L LTR MaLR 414 604 -11 205 269 67 67 chr3 201746354 201746488 -25778090 - L2 LINE L2 -2858 456 323 2452 55 7 0 chr3 201746889 201747182 -25777396 + AluY SINE Alu 1 295 -16 915 247 75 43 chr3 201747770 201748211 -25776367 + L1MC5 LINE L1 7196 7650 -311 657 186 115 27 chr3 201748256 201748439 -25776139 + L1MC5 LINE L1 7713 7911 -50 2173 86 7 10 chr3 201748757 201749231 -25775347 + AluSg SINE Alu 5 477 0 1453 175 33 82 chr3 201749801 201750229 -25774349 + LTR37A LTR ERV1 20 426 0 222 252 173 29 chr3 201751556 201751695 -25772883 - L2 LINE L2 -921 2393 2235 180 0 0 0 chr3 201751921 201751941 -25772637 + (A)n Simple_repeat Simple_repeat 1 20 0 23 33 0 0 chr3 201752252 201752282 -25772296 + AT_rich Low_complexity Low_complexity 1 30 0 631 275 69 16 chr3 201754192 201754439 -25770139 - MIR SINE MIR 0 262 3 313 357 114 0 chr3 201754725 201754865 -25769713 + L2 LINE L2 3117 3272 0 251 347 129 0 chr3 201755946 201756070 -25768508 + L2 LINE L2 3133 3272 0 524 194 81 16 chr3 201756301 201756425 -25768153 - MLT1D LTR MaLR 0 505 374 * 1140 222 63 40 chr3 201756410 201756807 -25767771 - Charlie4a DNA MER1_type -90 418 13 303 241 139 60 chr3 201756905 201757044 -25767534 + L1MC3 LINE L1 65 220 -5825 1318 114 100 5 chr3 201757044 201757254 -25767324 - MER30 DNA MER1_type 0 230 1 303 241 139 60 chr3 201757254 201757280 -25767298 + L1MC3 LINE L1 220 243 -5802 2324 262 62 38 chr3 201757329 201759191 -25765387 + L1MC3 LINE L1 1423 3293 -3271 * 6319 90 2 2 chr3 201759192 201760490 -25764088 - L1PA10 LINE L1 -12 6156 4854 7375 123 3 6 chr3 201760490 201761628 -25762950 + L1PA10 LINE L1 3704 4839 -1307 29 0 0 0 chr3 201761636 201761665 -25762913 + AT_rich Low_complexity Low_complexity 1 29 0 5089 134 28 2 chr3 201761665 201762498 -25762080 - L1PA16 LINE L1 -9 6157 5304 3841 236 35 49 chr3 201762498 201762833 -25761745 + L1MC3 LINE L1 3285 3623 -2941 1709 154 3 37 chr3 201762833 201763131 -25761447 + AluJb SINE Alu 1 288 -24 3841 236 35 49 chr3 201763131 201763414 -25761164 + L1MC3 LINE L1 3623 3909 -2655 1155 204 20 101 chr3 201763414 201763821 -25760757 + MLT1A2 LTR MaLR 1 374 0 3841 236 35 49 chr3 201763821 201764525 -25760053 + L1MC3 LINE L1 3909 4587 -1977 1830 194 19 8 chr3 201764525 201764886 -25759692 + MLT1A1 LTR MaLR 1 365 0 3841 236 35 49 chr3 201764886 201765043 -25759535 + L1MC3 LINE L1 4587 4745 -1819 2326 193 18 41 chr3 201765044 201765553 -25759025 - MLT1D LTR MaLR -8 497 1 7246 220 64 17 chr3 201765553 201766506 -25758072 + L1MC3 LINE L1 4757 5663 -2540 1944 126 42 6 chr3 201766506 201766839 -25757739 + L1PA16 LINE L1 5813 6157 -9 7246 220 64 17 chr3 201766839 201768479 -25756099 + L1MC3 LINE L1 5663 7474 -729 1843 158 20 0 chr3 201768739 201769031 -25755547 + AluSx SINE Alu 1 298 -14 333 329 111 26 chr3 201769071 201769448 -25755130 + L1MC/D LINE L1 5317 5725 -2083 270 0 0 0 chr3 201769503 201769533 -25755045 + (CA)n Simple_repeat Simple_repeat 2 31 0 2227 109 13 0 chr3 201769579 201769882 -25754696 + AluSg SINE Alu 1 307 -3 457 245 0 10 chr3 201769997 201770099 -25754479 - MLT1I LTR MaLR 0 409 309 246 373 24 8 chr3 201770277 201770403 -25754175 - MLT1I LTR MaLR -107 302 175 485 33 0 16 chr3 201770631 201770692 -25753886 - MER4E LTR ERV1 -29 737 678 293 285 19 13 chr3 201770792 201770950 -25753628 + CT-rich Low_complexity Low_complexity 3 161 0 * 958 143 0 16 chr3 201770912 201771094 -25753484 + (TTTC)n Simple_repeat Simple_repeat 1 179 0 345 154 0 0 chr3 201771094 201771146 -25753432 + polypyrimidine Low_complexity Low_complexity 3 54 0 432 37 0 0 chr3 201771717 201771771 -25752807 + (TG)n Simple_repeat Simple_repeat 2 55 0 197 299 26 39 chr3 201772039 201772116 -25752462 + MIR SINE MIR 65 140 -122 2244 124 28 25 chr3 201773433 201773796 -25750782 + THE1B LTR MaLR 1 364 0 403 205 71 45 chr3 201773974 201774086 -25750492 + MIR3 SINE MIR 87 201 -7 23 0 0 0 chr3 201775601 201775624 -25748954 + AT_rich Low_complexity Low_complexity 1 23 0 226 373 39 32 chr3 201776089 201776397 -25748181 + L1ME1 LINE L1 21 330 -6210 2251 246 127 34 chr3 201776933 201778353 -25746225 + L1ME1 LINE L1 909 2447 -4093 * 2565 226 57 33 chr3 201778344 201779736 -25744842 + L1ME1 LINE L1 5091 6509 -51 25 31 0 0 chr3 201779760 201779792 -25744786 + AT_rich Low_complexity Low_complexity 1 32 0 1703 167 7 14 chr3 201780361 201780655 -25743923 + AluJo SINE Alu 1 292 -20 1451 244 89 36 chr3 201781076 201781958 -25742620 - L1ME1 LINE L1 -220 5946 5016 1116 144 5 54 chr3 201781954 201782176 -25742402 - L1MC3 LINE L1 -341 7444 7234 * 660 211 70 6 chr3 201782171 201782327 -25742251 - L1MC3 LINE L1 -1160 6625 6460 * 786 254 101 69 chr3 201782330 201782764 -25741814 + LTR68 LTR ERV1 1 448 -292 319 248 124 25 chr3 201782901 201783022 -25741556 - MIR SINE MIR -118 144 12 464 311 58 5 chr3 201783935 201784125 -25740453 - MIR SINE MIR -7 255 56 648 282 5 36 chr3 201784371 201784566 -25740012 + MER5A DNA MER1_type 1 189 0 24 0 0 0 chr3 201787626 201787650 -25736928 + AT_rich Low_complexity Low_complexity 1 24 0 376 318 52 13 chr3 201787999 201788153 -25736425 + MIR3 SINE MIR 17 176 -32 654 304 102 75 chr3 201788163 201788614 -25735964 + MLT1J LTR MaLR 15 477 -34 195 308 0 0 chr3 201788724 201788776 -25735802 + MIR SINE MIR 81 132 -130 335 328 106 17 chr3 201791552 201791732 -25732846 - MIR SINE MIR -44 218 23 1629 199 31 0 chr3 201792751 201793042 -25731536 + AluJo SINE Alu 3 302 -10 4401 155 14 18 chr3 201793569 201795042 -25729536 - L1MA4 LINE L1 -288 6012 4544 242 347 169 0 chr3 201795097 201795221 -25729357 - L2 LINE L2 -2 3270 3126 571 285 162 38 chr3 201795241 201795686 -25728892 - MLT1H LTR MaLR -17 532 33 2289 110 0 0 chr3 201795694 201796004 -25728574 + AluSg SINE Alu 1 310 0 226 411 85 20 chr3 201796107 201796353 -25728225 - L2 LINE L2 -176 3096 2835 236 367 119 0 chr3 201796418 201796527 -25728051 + L2 LINE L2 3146 3267 -5 2574 27 0 3 chr3 201796719 201797016 -25727562 - AluY SINE Alu -15 296 1 264 233 47 47 chr3 201797921 201798007 -25726571 + L2 LINE L2 3225 3310 -3 940 89 16 0 chr3 201799358 201799482 -25725096 + AluSp SINE Alu 1 126 -187 1375 116 5 0 chr3 201799585 201799775 -25724803 + AluSp SINE Alu 110 300 -13 383 278 87 16 chr3 201799775 201799901 -25724677 - MIR3 SINE MIR -33 175 41 523 191 65 16 chr3 201799970 201800108 -25724470 - MIR SINE MIR -54 154 34 396 316 60 32 chr3 201800721 201800939 -25723639 + MIR SINE MIR 23 246 -16 221 261 67 67 chr3 201801088 201801222 -25723356 - MIR SINE MIR -79 183 50 2274 138 26 0 chr3 201801307 201801654 -25722924 + THE1B LTR MaLR 9 364 0 351 315 133 14 chr3 201802160 201802312 -25722266 + MIR SINE MIR 14 185 -23 1446 141 61 22 chr3 201802881 201803158 -25721420 - THE1C LTR MaLR -8 367 80 2033 122 75 0 chr3 201803268 201803603 -25720975 + L1PB1 LINE L1 5790 6149 -2 1068 152 0 67 chr3 201804271 201804495 -25720083 - L1PA13 LINE L1 0 6163 5955 210 328 86 8 chr3 201805101 201805229 -25719349 + L2 LINE L2 2717 2854 -460 362 349 96 6 chr3 201805368 201805534 -25719044 - MER5A DNA MER1_type 0 189 9 1441 140 36 0 chr3 201806204 201806425 -25718153 - MER30 DNA MER1_type 0 230 2 866 145 137 81 chr3 201808122 201808356 -25716222 - MER4B LTR ERV1 -334 276 30 652 105 0 98 chr3 201808421 201808554 -25716024 + MER4E LTR ERV1 479 598 -168 2461 122 23 5 chr3 201808565 201809144 -25715434 - MER4B-int LTR ERV1 0 6758 6093 2052 112 0 0 chr3 201809328 201809606 -25714972 - AluSg SINE Alu -14 296 19 381 131 0 0 chr3 201810292 201810353 -25714225 + (T)n Simple_repeat Simple_repeat 1 61 0 1829 153 0 28 chr3 201810546 201810871 -25713707 + AluSx SINE Alu 3 319 0 386 330 64 34 chr3 201810876 201811173 -25713405 + L2 LINE L2 2038 2343 -971 325 337 126 49 chr3 201811330 201811656 -25712922 + L2 LINE L2 2623 2973 -341 200 200 18 0 chr3 201811882 201811937 -25712641 + GA-rich Low_complexity Low_complexity 1 56 0 2506 232 28 34 chr3 201814143 201814851 -25709727 - L1ME3A LINE L1 0 6170 5467 213 303 86 86 chr3 201815557 201815755 -25708823 - L3 LINE CR1 -118 1459 1262 25 31 0 0 chr3 201816109 201816141 -25708437 + AT_rich Low_complexity Low_complexity 1 32 0 274 303 30 61 chr3 201818243 201818375 -25706203 + MIR SINE MIR 39 166 -96 224 311 178 7 chr3 201819457 201819592 -25704986 - MIR SINE MIR -92 170 13 1567 294 46 17 chr3 201822289 201822830 -25701748 + L2 LINE L2 1865 2421 -893 1293 112 28 5 chr3 201823016 201823231 -25701347 + L1PA13 LINE L1 5941 6160 -3 2211 112 0 3 chr3 201823243 201823539 -25701039 + AluSq SINE Alu 1 295 -18 1704 177 30 19 chr3 201823955 201824327 -25700251 - L1MA4 LINE L1 -5 6295 5920 6054 141 34 10 chr3 201824329 201826024 -25698554 - L1MA3 LINE L1 -53 6252 4507 727 119 63 0 chr3 201826109 201826252 -25698326 + L1 LINE L1 4259 4410 -1736 204 125 0 0 chr3 201826486 201826518 -25698060 + (A)n Simple_repeat Simple_repeat 1 32 0 351 0 0 0 chr3 201827480 201827519 -25697059 + (CA)n Simple_repeat Simple_repeat 2 40 0 319 209 0 15 chr3 201827530 201827597 -25696981 + Tigger1 DNA MER2_type 2 67 -2351 * 323 73 0 18 chr3 201827585 201827640 -25696938 + MADE1 DNA Mariner 27 80 0 * 881 203 6 17 chr3 201827640 201827799 -25696779 + Tigger1 DNA MER2_type 198 354 -2064 2246 102 3 0 chr3 201828207 201828502 -25696076 + AluSg SINE Alu 1 296 -14 2179 111 0 3 chr3 201828592 201828890 -25695688 + AluSg SINE Alu 1 297 -13 337 213 241 0 chr3 201829525 201829633 -25694945 - MER94 DNA DNA 0 134 1 514 204 32 159 chr3 201830203 201830576 -25694002 + L1MC4 LINE L1 7611 8042 0 1121 354 57 40 chr3 201830660 201831445 -25693133 + L2 LINE L2 2174 2972 -342 482 275 35 21 chr3 201831474 201831616 -25692962 - MIR SINE MIR -21 241 98 454 202 30 10 chr3 201831635 201831727 -25692851 + MLT1A2 LTR MaLR 1 94 -280 298 100 0 83 chr3 201831727 201831787 -25692791 - MLT2B1 LTR ERVL -1 519 465 1528 208 120 28 chr3 201831818 201832193 -25692385 - MLT2B1 LTR ERVL -20 534 83 17478 114 17 2 chr3 201832193 201835285 -25689293 + L1PA8A LINE L1 2636 5787 -344 11462 85 9 0 chr3 201835285 201837698 -25686880 + L1PA7 LINE L1 3728 6150 -4 17478 114 17 2 chr3 201837698 201838028 -25686550 + L1PA8A LINE L1 5787 6111 -20 559 161 0 0 chr3 201838051 201838144 -25686434 - MLT2B1 LTR ERVL -426 94 2 847 185 42 123 chr3 201838202 201838397 -25686181 + MLT1A2 LTR MaLR 186 370 -4 2102 184 125 15 chr3 201838480 201839083 -25685495 - MER39 LTR ERV1 0 707 1 2678 45 0 0 chr3 201839238 201839549 -25685029 - AluY SINE Alu 0 311 1 211 231 19 167 chr3 201839583 201839691 -25684887 - L2 LINE L2 -31 3282 3191 430 293 43 69 chr3 201840356 201840544 -25684034 - L2 LINE L2 -25 3288 3106 23 0 0 0 chr3 201840621 201840644 -25683934 + AT_rich Low_complexity Low_complexity 1 23 0 2247 117 0 10 chr3 201840645 201840953 -25683625 - AluSq SINE Alu -2 311 7 439 265 72 86 chr3 201840989 201841273 -25683305 + MLT1J2 LTR MaLR 50 323 -127 251 233 0 0 chr3 201842397 201842440 -25682138 - L3b LINE CR1 -245 1338 1296 469 347 71 32 chr3 201842916 201843351 -25681227 + L2 LINE L2 2817 3268 -4 2212 94 14 0 chr3 201843359 201843647 -25680931 - AluSx SINE Alu -20 292 1 27 0 0 0 chr3 201843655 201843682 -25680896 + AT_rich Low_complexity Low_complexity 1 27 0 553 191 48 96 chr3 201844794 201844982 -25679596 + MER112 DNA MER1_type 24 202 -58 2407 56 0 0 chr3 201845076 201845361 -25679217 + AluY SINE Alu 1 284 -27 256 125 0 0 chr3 201845361 201845401 -25679177 + (TAAA)n Simple_repeat Simple_repeat 1 180 0 412 319 7 14 chr3 201845447 201845585 -25678993 + MIR SINE MIR 28 164 -98 215 205 0 0 chr3 201847631 201847670 -25676908 + MIR SINE MIR 210 248 -14 380 319 44 0 chr3 201848530 201848643 -25675935 + MIR SINE MIR 33 150 -112 677 234 65 85 chr3 201850682 201850930 -25673648 - MIR SINE MIR -11 251 9 239 221 44 142 chr3 201851735 201851848 -25672730 + L2 LINE L2 3144 3245 -27 529 305 135 46 chr3 201851850 201852438 -25672140 - L2 LINE L2 -1 3312 2674 346 288 135 24 chr3 201852508 201852678 -25671900 - L2 LINE L2 -365 2949 2761 540 265 159 0 chr3 201854663 201854814 -25669764 - MER5A DNA MER1_type -6 183 9 497 291 42 20 chr3 201857221 201857527 -25667051 + L1M4 LINE L1 4531 4843 -1303 424 239 254 0 chr3 201857575 201857705 -25666873 + MIR SINE MIR 6 168 -94 1116 253 30 9 chr3 201857712 201858040 -25666538 + MLT1F LTR MaLR 39 373 -169 273 207 0 52 chr3 201858228 201858286 -25666292 - L2 LINE L2 -9 3304 3250 5969 176 91 34 chr3 201858866 201860376 -25664202 + Tigger6b DNA MER2_type 2 1597 0 1937 138 45 0 chr3 201860410 201860701 -25663877 + AluSx SINE Alu 1 304 -8 292 312 152 0 chr3 201860988 201861113 -25663465 - L2 LINE L2 -1 3312 3169 250 269 77 0 chr3 201861124 201861202 -25663376 + MIR SINE MIR 125 208 -54 961 181 39 0 chr3 201861289 201861471 -25663107 + MER5A DNA MER1_type 1 189 0 42026 40 0 4 chr3 201861992 201868171 -25656407 + L1PA4 LINE L1 1 6155 0 958 67 30 0 chr3 201868218 201868352 -25656226 - L1PA8 LINE L1 0 6172 6035 207 286 48 0 chr3 201868493 201868556 -25656022 + L2 LINE L2 3207 3272 0 331 335 39 19 chr3 201868621 201868776 -25655802 - MIR SINE MIR -77 185 28 23 0 0 0 chr3 201869907 201869930 -25654648 + AT_rich Low_complexity Low_complexity 1 23 0 311 353 58 5 chr3 201870415 201870605 -25653973 - MIR SINE MIR -7 255 56 301 252 133 44 chr3 201870972 201871107 -25653471 - MIR SINE MIR -68 194 48 709 272 149 15 chr3 201871248 201871590 -25652988 + LTR16B LTR ERVL 77 464 0 30 27 0 0 chr3 201873342 201873379 -25651199 + AT_rich Low_complexity Low_complexity 1 37 0 388 281 75 6 chr3 201873955 201874115 -25650463 + L1ME4a LINE L1 5800 5970 -151 716 275 82 20 chr3 201874215 201874557 -25650021 - MLT1I LTR MaLR 0 409 47 1115 307 115 20 chr3 201875088 201875867 -25648711 - L2 LINE L2 -12 3301 2452 754 169 0 15 chr3 201876080 201876210 -25648368 - FLAM_C SINE Alu -7 136 9 878 266 76 13 chr3 201877818 201878119 -25646459 - MER110 LTR ERV1 -6 485 166 25 65 0 0 chr3 201878769 201878815 -25645763 + AT_rich Low_complexity Low_complexity 1 46 0 387 0 0 0 chr3 201878894 201878937 -25645641 + (TCTA)n Simple_repeat Simple_repeat 4 46 0 455 207 0 0 chr3 201878941 201879023 -25645555 - MLT2B2 LTR ERVL -75 440 359 1636 176 84 31 chr3 201879542 201879884 -25644694 + MLT2D LTR ERVL 1 368 -46 602 26 13 0 chr3 201879884 201879960 -25644618 + (TCTA)n Simple_repeat Simple_repeat 1 77 0 1636 176 84 31 chr3 201879960 201880008 -25644570 + MLT2D LTR ERVL 368 412 -2 522 200 0 0 chr3 201880627 201880712 -25643866 + 5S rRNA rRNA 4 88 -33 718 296 40 0 chr3 201881043 201881344 -25643234 + L1M4 LINE L1 3692 4004 -2142 475 145 0 0 chr3 201881354 201881430 -25643148 + L1MC4a LINE L1 6643 6718 -1090 906 227 28 35 chr3 201881430 201881712 -25642866 + L1MC4a LINE L1 7152 7431 -377 971 207 23 109 chr3 201881712 201882136 -25642442 + MLT2D LTR ERVL 1 417 -47 1279 230 57 5 chr3 201882211 201882581 -25641997 + L1MD3 LINE L1 7599 7987 -8 14529 161 27 11 chr3 201883412 201885995 -25638583 + L1M1 LINE L1 17 2641 -4924 2256 83 0 0 chr3 201885995 201886271 -25638307 + AluSx SINE Alu 1 276 -36 1100 65 18 6 chr3 201886308 201886512 -25638066 + (GAAA)n Simple_repeat Simple_repeat 1 376 0 1100 65 18 6 chr3 201886512 201886680 -25637898 + (GAAA)n Simple_repeat Simple_repeat 2 171 0 883 78 20 13 chr3 201886701 201886854 -25637724 + (GAAA)n Simple_repeat Simple_repeat 4 157 0 851 145 13 21 chr3 201886959 201887188 -25637390 + GA-rich Low_complexity Low_complexity 1 227 0 3798 112 9 8 chr3 201887222 201887875 -25636703 + L1M1 LINE L1 2642 3295 -4270 4232 203 20 16 chr3 201887875 201888790 -25635788 - L1M1 LINE L1 -6560 1005 88 369 0 0 0 chr3 201888795 201888836 -25635742 + (TG)n Simple_repeat Simple_repeat 2 42 0 818 127 0 0 chr3 201888945 201889079 -25635499 - L1MEd LINE L1 -2325 3804 3671 249 229 0 0 chr3 201889077 201889125 -25635453 - L1MEd LINE L1 -3467 2662 2615 * 6164 142 23 12 chr3 201889121 201889306 -25635272 + L1MA3 LINE L1 3592 3773 -2532 8626 51 2 11 chr3 201889306 201890387 -25634191 + MER11C LTR ERVK 1 1071 0 6164 142 23 12 chr3 201890387 201892692 -25631886 + L1MA3 LINE L1 3773 6305 0 21 0 0 0 chr3 201892692 201892713 -25631865 + AT_rich Low_complexity Low_complexity 1 21 0 1917 147 55 0 chr3 201892730 201893023 -25631555 - AluSx SINE Alu -3 309 1 449 330 22 11 chr3 201894779 201894961 -25629617 - MIR3 SINE MIR -2 206 23 2291 100 3 0 chr3 201895409 201895700 -25628878 + AluSg SINE Alu 1 292 -18 477 290 45 33 chr3 201896112 201896763 -25627815 - L1MEd LINE L1 -851 1639 897 423 0 0 0 chr3 201897380 201897427 -25627151 + (TAA)n Simple_repeat Simple_repeat 3 49 0 1426 261 41 5 chr3 201897437 201897805 -25626773 + MLT1I LTR MaLR 26 406 -3 25 31 0 0 chr3 201897816 201897848 -25626730 + AT_rich Low_complexity Low_complexity 1 32 0 245 211 0 18 chr3 201898268 201898325 -25626253 + CT-rich Low_complexity Low_complexity 2 57 0 22 35 0 0 chr3 201898883 201898912 -25625666 + AT_rich Low_complexity Low_complexity 1 29 0 213 339 0 0 chr3 201899098 201899154 -25625424 - L3 LINE CR1 -5 1572 1517 334 262 91 0 chr3 201899280 201899490 -25625088 - MER113 DNA MER1_type? -292 229 1 322 230 250 0 chr3 201899492 201899592 -25624986 - MIR3 SINE MIR -54 154 30 382 355 81 13 chr3 201900851 201901085 -25623493 - MIR SINE MIR -3 259 10 180 275 116 148 chr3 201903341 201903532 -25621046 - L2 LINE L2 -107 3165 2984 2342 106 0 0 chr3 201903532 201903835 -25620743 + AluSx SINE Alu 5 307 -5 180 275 116 148 chr3 201903835 201903927 -25620651 - L2 LINE L2 -288 2984 2891 284 224 0 15 chr3 201904728 201904795 -25619783 - MIR SINE MIR -121 141 76 1982 157 61 16 chr3 201904818 201905195 -25619383 - MER61D LTR ERV1 -2 499 106 328 272 37 80 chr3 201905347 201905509 -25619069 + L1MEd LINE L1 1103 1257 -4862 1127 75 0 0 chr3 201905528 201905662 -25618916 + AluY SINE Alu 1 134 -177 2319 52 41 0 chr3 201905662 201905953 -25618625 + AluY SINE Alu 1 303 -8 395 307 34 45 chr3 201907807 201907978 -25616600 + MIR SINE MIR 11 179 -83 714 277 103 0 chr3 201907978 201908162 -25616416 + MIR SINE MIR 3 205 -57 404 137 55 0 chr3 201908166 201908239 -25616339 + MER53 DNA DNA 2 78 -111 1728 175 13 13 chr3 201908344 201908647 -25615931 + AluJo SINE Alu 1 303 -9 690 75 0 0 chr3 201908658 201908751 -25615827 + (GGAA)n Simple_repeat Simple_repeat 4 96 0 1728 154 0 58 chr3 201908939 201909269 -25615309 + AluJb SINE Alu 1 311 -1 238 218 0 77 chr3 201910217 201910295 -25614283 - MIR SINE MIR -144 118 47 6117 94 7 14 chr3 201912028 201912930 -25611648 + THE1B-int LTR MaLR 673 1567 -13 2327 123 14 22 chr3 201912936 201913301 -25611277 + THE1B LTR MaLR 1 362 -2 6325 136 15 2 chr3 201913305 201914990 -25609588 + L1PB1 LINE L1 4446 6150 -1 376 192 33 0 chr3 201915005 201915150 -25609428 + L1MA9 LINE L1 6019 6264 -48 1370 118 0 20 chr3 201915671 201915866 -25608712 + AluY SINE Alu 104 294 -17 228 330 143 0 chr3 201916526 201916638 -25607940 - L2 LINE L2 -6 3266 3139 304 298 35 77 chr3 201918599 201918911 -25605667 - MLT1J LTR MaLR 0 511 213 484 272 27 54 chr3 201919998 201920182 -25604396 + L2 LINE L2 3135 3313 0 180 0 0 0 chr3 201920244 201920264 -25604314 + (A)n Simple_repeat Simple_repeat 1 20 0 891 231 58 21 chr3 201920877 201921120 -25603458 + L1PB4 LINE L1 5901 6152 -4 207 139 0 0 chr3 201921230 201921266 -25603312 + (TG)n Simple_repeat Simple_repeat 2 37 0 243 262 65 47 chr3 201921992 201922099 -25602479 + MLT1H LTR MaLR 123 231 -318 637 217 19 52 chr3 201922671 201922883 -25601695 - MER31-int LTR ERV1 -1914 3022 2818 323 188 0 0 chr3 201923075 201923139 -25601439 - MER92C LTR ERV1 0 554 491 944 184 37 25 chr3 201923297 201923644 -25600934 + MER31B LTR ERV1 1 514 0 471 194 19 10 chr3 201923644 201923737 -25600841 - MER92B LTR ERV1 -542 94 1 216 0 0 0 chr3 201924474 201924498 -25600080 + (CA)n Simple_repeat Simple_repeat 2 25 0 448 217 167 36 chr3 201925797 201925935 -25598643 + MER5B DNA MER1_type 7 162 -16 2166 118 3 3 chr3 201926079 201926384 -25598194 + AluSq SINE Alu 3 307 -6 539 242 129 31 chr3 201926397 201926591 -25597987 - Charlie8 DNA MER1_type -2204 213 1 180 0 0 0 chr3 201927031 201927051 -25597527 + (A)n Simple_repeat Simple_repeat 1 20 0 1595 221 20 3 chr3 201927393 201927742 -25596836 - MLT1A1 LTR MaLR -8 357 3 295 253 53 27 chr3 201928103 201928178 -25596400 - L2 LINE L2 -22 3250 3174 264 395 24 8 chr3 201929006 201929130 -25595448 + MIR3 SINE MIR 67 192 -16 16031 196 14 15 chr3 201929271 201929612 -25594966 + L1PA15-16 LINE L1 1736 2076 -4773 1402 216 9 19 chr3 201929612 201929927 -25594651 + AluJb SINE Alu 1 312 0 16031 196 14 15 chr3 201929927 201933564 -25591014 + L1PA15-16 LINE L1 2076 5691 -1158 501 265 73 92 chr3 201933739 201934097 -25590481 + MLT1H LTR MaLR 198 548 -1 625 226 56 69 chr3 201934889 201935194 -25589384 - HAL1 LINE L1 -40 2467 2167 270 318 45 17 chr3 201935196 201935372 -25589206 - HAL1 LINE L1 -385 2122 1942 458 241 69 50 chr3 201935402 201935664 -25588914 - HAL1 LINE L1 -1175 1332 1066 2137 119 3 0 chr3 201935703 201935997 -25588581 - AluSx SINE Alu -16 296 2 244 159 0 0 chr3 201936055 201936099 -25588479 - Alu SINE Alu -8 125 82 770 290 90 52 chr3 201936123 201936147 -25588431 - L2 LINE L2 -11 3302 3280 1832 166 59 68 chr3 201936147 201936618 -25587960 + MLT1C LTR MaLR 1 467 0 770 290 90 52 chr3 201936618 201936790 -25587788 - L2 LINE L2 -33 3280 3116 333 0 0 0 chr3 201936790 201936827 -25587751 + (TG)n Simple_repeat Simple_repeat 1 37 0 770 290 90 52 chr3 201936827 201937281 -25587297 - L2 LINE L2 -197 3116 2632 188 262 0 0 chr3 201937281 201937323 -25587255 - L2 LINE L2 -852 2462 2421 1875 150 3 0 chr3 201937423 201937709 -25586869 - AluJb SINE Alu -15 297 11 1535 296 75 34 chr3 201937724 201938551 -25586027 - HAL1 LINE L1 -1590 917 57 618 328 46 60 chr3 201938570 201938872 -25585706 + L2 LINE L2 2973 3270 -2 512 298 44 49 chr3 201939785 201939990 -25584588 + L2 LINE L2 3066 3269 -3 936 245 103 47 chr3 201940015 201940522 -25584056 + MLT1H LTR MaLR 1 535 -14 355 284 0 0 chr3 201942948 201943064 -25581514 + L1ME LINE L1 4729 4844 -1302 1673 218 26 42 chr3 201943088 201943468 -25581110 - MLT2B3 LTR ERVL 0 554 181 2934 161 38 5 chr3 201943663 201944614 -25579964 - L1M2 LINE L1 -564 5727 4747 262 151 75 0 chr3 201944614 201944667 -25579911 + L1M2 LINE L1 5720 5776 -515 180 111 0 0 chr3 201944673 201944700 -25579878 + (CATATA)n Simple_repeat Simple_repeat 3 29 0 406 154 44 11 chr3 201944700 201944791 -25579787 + L1MA9 LINE L1 6219 6312 0 23 0 0 0 chr3 201944827 201944850 -25579728 + AT_rich Low_complexity Low_complexity 1 23 0 2058 157 36 17 chr3 201944945 201945302 -25579276 - THE1B LTR MaLR 0 364 1 789 247 41 14 chr3 201945385 201945824 -25578754 + L1ME LINE L1 5010 5462 -708 237 290 72 0 chr3 201946084 201946153 -25578425 - MIR SINE MIR -93 115 42 2256 118 3 0 chr3 201946474 201946779 -25577799 - AluSx SINE Alu 0 312 7 200 287 221 7 chr3 201946948 201947084 -25577494 + L2 LINE L2 3141 3305 -8 1173 159 14 5 chr3 201948180 201948388 -25576190 - L1MA3 LINE L1 -74 6231 6022 462 111 0 0 chr3 201948388 201948460 -25576118 + L1MA3 LINE L1 6234 6305 0 2780 48 9 0 chr3 201948679 201949010 -25575568 - L1PA2 LINE L1 -3 6152 5819 420 218 0 36 chr3 201949174 201949284 -25575294 + MER31-int LTR ERV1 4364 4469 -467 237 276 117 56 chr3 201950226 201950440 -25574138 - L2 LINE L2 -101 3212 2986 1850 136 47 4 chr3 201950773 201951052 -25573526 - AluJb SINE Alu -12 300 10 737 303 80 8 chr3 201951491 201951854 -25572724 - L1ME4a LINE L1 -174 5947 5559 228 301 205 0 chr3 201952934 201953100 -25571478 - L2 LINE L2 -177 3095 2896 222 346 37 9 chr3 201953367 201953474 -25571104 - MIR SINE MIR -36 226 117 182 266 47 16 chr3 201953664 201953728 -25570850 + L2 LINE L2 1404 1469 -1845 269 367 107 54 chr3 201953732 201954173 -25570405 - L2 LINE L2 -5 3267 2804 210 91 0 0 chr3 201954517 201954550 -25570028 + (CA)n Simple_repeat Simple_repeat 2 34 0 662 318 76 21 chr3 201954614 201954995 -25569583 - L2 LINE L2 -1007 2307 1906 490 352 96 41 chr3 201955010 201955555 -25569023 + L2 LINE L2 2579 3174 -98 3657 134 11 14 chr3 201955566 201956124 -25568454 - L1PA13 LINE L1 -6 6157 5602 2322 140 3 3 chr3 201956124 201956760 -25567818 + L1PA13 LINE L1 4969 5604 -557 242 317 24 12 chr3 201956770 201956852 -25567726 + L2 LINE L2 3186 3268 -4 1761 176 10 0 chr3 201956881 201957177 -25567401 - AluJo SINE Alu -13 299 1 232 318 0 0 chr3 201957249 201957315 -25567263 - MIR3 SINE MIR -11 197 132 1166 159 26 23 chr3 201958826 201959156 -25565422 + MLT2A2 LTR ERVL 222 453 0 1200 260 78 2 chr3 201959892 201960433 -25564145 + MER77 LTR ERV1 1 605 0 796 275 104 64 chr3 201960535 201961172 -25563406 + L1MC4 LINE L1 7247 7908 -134 219 222 0 0 chr3 201961286 201961331 -25563247 + GA-rich Low_complexity Low_complexity 1 45 0 711 184 0 0 chr3 201961459 201961600 -25562978 + GA-rich Low_complexity Low_complexity 2 142 0 223 178 22 0 chr3 201961718 201961763 -25562815 + (CA)n Simple_repeat Simple_repeat 2 47 0 2361 108 0 0 chr3 201961869 201962176 -25562402 - AluSx SINE Alu -1 311 5 245 273 58 33 chr3 201962716 201962837 -25561741 + MIR SINE MIR 20 143 -65 237 312 78 19 chr3 201963631 201963737 -25560841 + MIR SINE MIR 20 131 -77 236 330 68 68 chr3 201964624 201964742 -25559836 - L2 LINE L2 -15 3257 3140 213 331 80 34 chr3 201966016 201966279 -25558299 - L2 LINE L2 -194 3078 2804 21 0 0 0 chr3 201966405 201966426 -25558152 + AT_rich Low_complexity Low_complexity 1 21 0 208 338 70 19 chr3 201966698 201966855 -25557723 + L2 LINE L2 2799 2963 -351 355 289 128 6 chr3 201967889 201968045 -25556533 + MIR SINE MIR 56 230 -32 935 304 268 27 chr3 201968916 201969923 -25554655 - L3 LINE CR1 -60 1517 268 307 235 60 60 chr3 201969934 201970100 -25554478 + L1MC5 LINE L1 7676 7841 -120 289 198 39 55 chr3 201970889 201971071 -25553507 + (CCCCAA)n Simple_repeat Simple_repeat 1 179 0 324 243 178 9 chr3 201971705 201971812 -25552766 - FLAM_A SINE Alu -4 129 5 2384 130 61 3 chr3 201975291 201975652 -25548926 - MLT1B LTR MaLR -3 387 6 236 200 17 0 chr3 201975823 201975883 -25548695 + (TA)n Simple_repeat Simple_repeat 1 61 0 222 37 0 0 chr3 201975884 201975911 -25548667 + (CA)n Simple_repeat Simple_repeat 2 28 0 192 390 62 0 chr3 201976491 201976637 -25547941 + MIR SINE MIR 47 201 -61 1051 321 27 12 chr3 201976678 201977083 -25547495 + LTR16B LTR ERVL 54 464 0 23 78 0 0 chr3 201978531 201978582 -25545996 + AT_rich Low_complexity Low_complexity 1 51 0 1784 184 51 0 chr3 201979068 201979384 -25545194 + L1PA5 LINE L1 3 334 -5812 37143 65 7 3 chr3 201979484 201985091 -25539487 + L1PA5 LINE L1 524 6154 0 13688 186 49 28 chr3 201985269 201987056 -25537522 + L1M1 LINE L1 53 1801 -5764 9163 60 3 6 chr3 201987056 201988130 -25536448 - MER11C LTR ERVK 0 1071 1 13688 186 49 28 chr3 201988130 201989568 -25535010 + L1M1 LINE L1 1801 3953 -3612 2067 127 10 3 chr3 201989568 201989859 -25534719 + AluSg SINE Alu 1 293 -17 13688 186 49 28 chr3 201989859 201990220 -25534358 + L1M1 LINE L1 3953 4305 -3260 11595 168 36 21 chr3 201990217 201992292 -25532286 + L1M1 LINE L1 19 2123 -5442 * 5919 237 15 3 chr3 201992392 201993558 -25531020 - L1PA12 LINE L1 -6391 1190 11 3023 179 30 6 chr3 201993567 201993628 -25530950 - L1 LINE L1 -3312 4253 4195 2184 119 6 13 chr3 201993628 201993939 -25530639 - AluSq SINE Alu -4 309 1 3023 179 30 6 chr3 201993939 201994616 -25529962 - L1 LINE L1 -3370 4195 3493 1999 287 21 31 chr3 201994619 201995294 -25529284 + L1PA12 LINE L1 1089 1756 -5825 250 313 53 57 chr3 201995300 201995562 -25529016 + L1PA12 LINE L1 1588 1848 -5733 14436 180 38 5 chr3 201995668 201999870 -25524708 + L1PA14 LINE L1 1674 6150 -1449 1799 86 4 0 chr3 201999870 202000102 -25524476 + AluY SINE Alu 65 297 -14 14436 180 38 5 chr3 202000102 202001474 -25523104 + L1PA14 LINE L1 6150 7475 -124 276 82 0 20 chr3 202001477 202001526 -25523052 + U5 snRNA snRNA 1 48 -68 851 140 0 0 chr3 202001526 202001662 -25522916 + L1PA13 LINE L1 6023 6158 -5 368 198 35 12 chr3 202001689 202001775 -25522803 + Charlie4 DNA MER1_type 1874 1961 0 180 111 0 0 chr3 202001892 202001919 -25522659 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 315 198 238 63 chr3 202001922 202002048 -25522530 - L2 LINE L2 -15 3298 3151 787 180 32 82 chr3 202002176 202002431 -25522147 + MER33 DNA MER1_type 1 230 -81 1228 172 36 39 chr3 202002440 202002663 -25521915 + L1MA3 LINE L1 2836 3059 -3087 1705 203 7 7 chr3 202002663 202002973 -25521605 - AluJb SINE Alu -2 310 1 1228 172 36 39 chr3 202002973 202003086 -25521492 + L1MA3 LINE L1 3059 3171 -2975 6872 167 40 8 chr3 202003318 202006109 -25518469 + L1MA3 LINE L1 3184 6269 -36 292 327 13 47 chr3 202006323 202006473 -25518105 - MIR SINE MIR -1 261 117 1083 237 0 4 chr3 202006522 202006758 -25517820 + MLT1A1 LTR MaLR 4 238 -127 2999 222 28 0 chr3 202006761 202007522 -25517056 + L1 LINE L1 2512 3293 -2853 5247 219 34 51 chr3 202007638 202008107 -25516471 + L1PA13 LINE L1 3981 4456 -1707 2233 111 11 53 chr3 202008107 202008409 -25516169 + THE1B LTR MaLR 1 285 -79 2553 68 0 0 chr3 202008409 202008718 -25515860 - AluY SINE Alu -2 309 1 2233 111 11 53 chr3 202008718 202008795 -25515783 + THE1B LTR MaLR 285 364 0 3266 102 4 0 chr3 202008795 202009265 -25515313 + THE1B-int LTR MaLR 1 472 -1108 5247 219 34 51 chr3 202009265 202010516 -25514062 + L1PA13 LINE L1 4454 6123 -40 2076 137 7 7 chr3 202010664 202010964 -25513614 + AluSx SINE Alu 1 300 -12 225 160 20 20 chr3 202011625 202011675 -25512903 + (TA)n Simple_repeat Simple_repeat 2 51 0 684 286 59 0 chr3 202011843 202012046 -25512532 - MIR SINE MIR 0 262 48 5867 95 13 15 chr3 202013602 202013688 -25510890 - L1PA13 LINE L1 0 6163 6078 204 67 0 0 chr3 202013688 202013718 -25510860 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 2323 60 0 3 chr3 202013718 202014000 -25510578 - AluY SINE Alu -30 281 1 5867 95 13 15 chr3 202014000 202014834 -25509744 - L1PA13 LINE L1 -83 6080 5246 188 191 0 64 chr3 202014834 202014881 -25509697 + L2 LINE L2 3245 3288 -25 28 0 0 0 chr3 202015116 202015144 -25509434 + AT_rich Low_complexity Low_complexity 1 28 0 264 270 79 51 chr3 202015624 202015802 -25508776 - MLT1K LTR MaLR -218 370 188 23 68 0 0 chr3 202016369 202016413 -25508165 + AT_rich Low_complexity Low_complexity 1 44 0 1343 103 0 0 chr3 202017714 202017888 -25506690 - AluSg/x SINE Alu -6 304 131 2272 74 7 20 chr3 202018500 202018832 -25505746 - AluSp SINE Alu 0 313 1 482 298 136 11 chr3 202018963 202019154 -25505424 - MIR SINE MIR -14 248 34 440 323 44 31 chr3 202020357 202020586 -25503992 + MIR SINE MIR 18 249 -13 24 0 0 0 chr3 202021003 202021027 -25503551 + AT_rich Low_complexity Low_complexity 1 24 0 187 326 90 34 chr3 202021119 202021208 -25503370 + MIR SINE MIR 23 116 -92 678 257 110 75 chr3 202021229 202021374 -25503204 + MER101B LTR ERV1 13 152 -322 2416 59 0 10 chr3 202021374 202021678 -25502900 - AluY SINE Alu -9 302 2 678 257 110 75 chr3 202021678 202021900 -25502678 + MER101B LTR ERV1 152 300 -174 1967 112 0 39 chr3 202021900 202022212 -25502366 + AluY SINE Alu 1 300 -11 678 257 110 75 chr3 202022212 202022364 -25502214 + MER101B LTR ERV1 300 445 -29 949 221 15 0 chr3 202022427 202022631 -25501947 + MER58A DNA MER1_type 1 207 -17 3141 236 77 40 chr3 202022631 202023166 -25501412 - L1M4 LINE L1 -984 5442 4928 426 175 10 0 chr3 202023166 202023263 -25501315 - L1MA8 LINE L1 -1 6290 6193 3141 236 77 40 chr3 202023263 202023412 -25501166 - L1M4 LINE L1 -1498 4928 4786 774 147 0 70 chr3 202023412 202023555 -25501023 - FLAM_C SINE Alu 0 133 1 3141 236 77 40 chr3 202023555 202024146 -25500432 - L1M4 LINE L1 -1640 4786 4119 2046 234 82 9 chr3 202024175 202024984 -25499594 - L1MCa LINE L1 -3150 3276 2406 187 318 32 58 chr3 202025079 202025233 -25499345 - MIR SINE MIR -59 203 54 8138 127 79 45 chr3 202025918 202026504 -25498074 - MER41B-int LTR ERV1 -3485 2778 2214 2393 33 0 4 chr3 202026504 202026778 -25497800 + AluY SINE Alu 24 296 -15 8138 127 79 45 chr3 202026778 202027694 -25496884 - MER41B-int LTR ERV1 -4049 2214 1331 225 0 0 0 chr3 202027694 202027719 -25496859 + (GA)n Simple_repeat Simple_repeat 2 26 0 8138 127 79 45 chr3 202027719 202027823 -25496755 - MER41B-int LTR ERV1 -4932 1331 3 4883 137 56 4 chr3 202027855 202028671 -25495907 - MER41B-int LTR ERV1 -5087 859 1 990 60 0 77 chr3 202028841 202028966 -25495612 - MER41B LTR ERV1 0 635 525 2635 36 7 0 chr3 202028966 202029273 -25495305 + AluY SINE Alu 1 309 -2 990 60 0 77 chr3 202029273 202029315 -25495263 - MER41B LTR ERV1 -110 525 481 336 169 0 0 chr3 202029398 202029475 -25495103 + T-rich Low_complexity Low_complexity 1 77 0 400 164 181 0 chr3 202030988 202031104 -25493474 - MLT1D LTR MaLR 0 505 369 1265 56 6 0 chr3 202031106 202031267 -25493311 + AluY SINE Alu 132 293 -18 295 262 10 39 chr3 202031270 202031373 -25493205 - MLT1D LTR MaLR -129 376 277 665 226 28 23 chr3 202031400 202031577 -25493001 - MLT1D LTR MaLR -308 197 20 1337 91 15 10 chr3 202031667 202031866 -25492712 + L1PB1 LINE L1 5949 6148 -3 38183 36 24 4 chr3 202032112 202037471 -25487107 + L1P1 LINE L1 295 5765 -390 2352 83 0 32 chr3 202087891 202088205 -25436373 - AluSq SINE Alu -9 304 1 319 329 20 20 chr3 202088893 202089045 -25435533 - MIR SINE MIR -98 164 13 1958 172 56 21 chr3 202089334 202089711 -25434867 - MLT1B LTR MaLR 0 390 1 2185 117 0 0 chr3 202092267 202092573 -25432005 - AluSx SINE Alu 0 306 1 583 226 21 70 chr3 202092848 202093034 -25431544 + MER5B DNA MER1_type 1 177 -1 1150 188 41 80 chr3 202094324 202094509 -25430069 - LTR16C LTR ERVL -2 489 319 2242 53 14 0 chr3 202094509 202094790 -25429788 - L1PA5 LINE L1 0 6154 5870 1150 188 41 80 chr3 202094790 202094918 -25429660 - LTR16C LTR ERVL -172 319 188 2233 82 21 0 chr3 202094957 202095236 -25429342 + AluSc SINE Alu 1 285 -24 240 351 61 12 chr3 202095245 202095410 -25429168 - LTR16C LTR ERVL -316 175 3 405 315 101 14 chr3 202095605 202095824 -25428754 + MIR SINE MIR 7 244 -18 2347 103 0 6 chr3 202096894 202097205 -25427373 - AluSg SINE Alu -1 309 1 1199 306 37 11 chr3 202097841 202098211 -25426367 + MLT1J LTR MaLR 5 384 -127 309 210 140 15 chr3 202098211 202098369 -25426209 - MLT1G1 LTR MaLR 0 595 353 * 526 256 77 8 chr3 202098345 202098488 -25426090 - MLT1G3 LTR MaLR -181 414 195 230 259 95 78 chr3 202098553 202098669 -25425909 - MLT1G3 LTR MaLR -468 127 10 2266 104 13 0 chr3 202098673 202098972 -25425606 + AluSx SINE Alu 1 303 -9 2201 120 0 19 chr3 202098972 202099288 -25425290 + AluSg SINE Alu 1 310 0 332 262 24 24 chr3 202099322 202099448 -25425130 + MLT1J LTR MaLR 384 509 -2 214 196 20 0 chr3 202100269 202100320 -25424258 + T-rich Low_complexity Low_complexity 2 53 0 199 311 185 7 chr3 202100738 202100889 -25423689 + L2 LINE L2 2905 3082 -190 357 250 128 18 chr3 202100896 202101060 -25423518 - L2 LINE L2 -9 3304 3123 736 282 46 19 chr3 202101112 202101371 -25423207 - LTR40b LTR ERVL -1 461 196 281 205 277 18 chr3 202101531 202101643 -25422935 - LTR40a LTR ERVL -378 141 1 504 310 113 24 chr3 202101686 202102016 -25422562 - L2 LINE L2 -261 3011 2657 2830 174 23 23 chr3 202102151 202102254 -25422324 - MER34 LTR ERV1 0 542 440 2147 108 0 11 chr3 202102254 202102590 -25421988 - AluSx SINE Alu 0 333 1 2830 174 23 23 chr3 202102590 202103001 -25421577 - MER34 LTR ERV1 -101 441 27 228 93 80 0 chr3 202103336 202103411 -25421167 + (TA)n Simple_repeat Simple_repeat 1 81 0 354 161 57 8 chr3 202103504 202103628 -25420950 + (TATAA)n Simple_repeat Simple_repeat 5 134 0 408 37 116 18 chr3 202103629 202103793 -25420785 + (TA)n Simple_repeat Simple_repeat 1 180 0 27 29 0 0 chr3 202103793 202103827 -25420751 + AT_rich Low_complexity Low_complexity 1 34 0 1122 130 0 0 chr3 202103831 202103985 -25420593 + AluSg/x SINE Alu 135 288 -22 2687 161 31 7 chr3 202106719 202107165 -25417413 - LTR32 LTR ERVL 0 471 15 561 110 0 0 chr3 202107145 202107218 -25417360 - LTR32 LTR ERVL -383 88 16 * 1813 178 3 0 chr3 202107626 202107918 -25416660 - AluJb SINE Alu -19 293 1 316 196 0 0 chr3 202108473 202108524 -25416054 + L1ME4a LINE L1 5985 6035 -86 783 256 78 4 chr3 202108528 202108758 -25415820 - MIR SINE MIR 0 262 16 973 192 150 0 chr3 202110289 202110482 -25414096 + MER58A DNA MER1_type 2 223 -1 360 43 0 0 chr3 202110610 202110626 -25413952 + (TG)n Simple_repeat Simple_repeat 1 62 0 360 43 0 0 chr3 202110626 202110672 -25413906 + (TG)n Simple_repeat Simple_repeat 1 46 0 636 241 228 37 chr3 202110925 202111219 -25413359 - MLT1H LTR MaLR -199 350 1 4732 128 36 31 chr3 202111248 202111530 -25413048 - Tigger3b DNA MER2_type -1798 1231 952 2431 96 0 0 chr3 202111530 202111843 -25412735 + AluSq SINE Alu 1 313 0 4732 128 36 31 chr3 202111843 202112023 -25412555 - Tigger3b DNA MER2_type -2077 952 774 2438 90 3 0 chr3 202112023 202112335 -25412243 + AluSp SINE Alu 1 313 0 4732 128 36 31 chr3 202112335 202112681 -25411897 - Tigger3b DNA MER2_type -2255 774 418 231 376 0 0 chr3 202112727 202112812 -25411766 - MIR SINE MIR -164 98 14 1970 122 52 124 chr3 202112986 202113100 -25411478 - Tigger3b DNA MER2_type -2630 398 277 2484 63 10 0 chr3 202113100 202113400 -25411178 + AluY SINE Alu 1 303 -8 1970 122 52 124 chr3 202113400 202113537 -25411041 - Tigger3b DNA MER2_type -2751 277 188 912 127 0 0 chr3 202113537 202113655 -25410923 - FLAM_C SINE Alu -15 118 1 1970 122 52 124 chr3 202113655 202113829 -25410749 - Tigger3b DNA MER2_type -2840 188 3 258 81 0 0 chr3 202113829 202113866 -25410712 + (TG)n Simple_repeat Simple_repeat 2 38 0 186 307 23 23 chr3 202113878 202113966 -25410612 - MIR SINE MIR -50 212 125 1657 172 6 35 chr3 202113969 202114283 -25410295 + AluJo SINE Alu 1 305 -7 204 304 14 94 chr3 202114296 202114434 -25410144 - MIR SINE MIR -121 141 15 367 231 189 35 chr3 202114523 202114676 -25409902 + MLT1J2 LTR MaLR 75 276 -174 637 196 113 57 chr3 202114676 202114831 -25409747 + MER3 DNA MER1_type 5 176 -33 2086 103 11 0 chr3 202114831 202115135 -25409443 + AluSx SINE Alu 1 307 0 637 196 113 57 chr3 202115135 202115172 -25409406 + MER3 DNA MER1_type 176 209 0 367 231 189 35 chr3 202115172 202115232 -25409346 + MLT1J2 LTR MaLR 276 325 -125 2152 112 23 0 chr3 202115518 202115821 -25408757 + AluSq SINE Alu 1 310 -3 286 248 198 10 chr3 202116649 202116750 -25407828 + MIR SINE MIR 14 133 -129 593 277 106 63 chr3 202117938 202118242 -25406336 + MLT1J1 LTR MaLR 63 380 -70 2398 81 0 3 chr3 202118312 202118609 -25405969 + AluSx SINE Alu 3 298 -14 2399 58 41 0 chr3 202118706 202118997 -25405581 + AluYa5 SINE Alu 2 304 -7 1350 205 65 17 chr3 202119007 202119405 -25405173 + L1MB2 LINE L1 5528 6028 -143 2124 125 7 0 chr3 202119565 202119862 -25404716 + AluSq SINE Alu 1 299 -14 1240 253 26 14 chr3 202119996 202120344 -25404234 + L1ME3A LINE L1 5675 6026 -144 2392 88 0 3 chr3 202120448 202120754 -25403824 + AluSg SINE Alu 1 305 -5 3440 126 99 67 chr3 202121837 202122036 -25402542 - LTR8A LTR ERV1 0 727 536 1668 145 49 33 chr3 202122036 202122340 -25402238 - AluJb SINE Alu -3 309 1 3440 126 99 67 chr3 202122340 202122844 -25401734 - LTR8A LTR ERV1 -191 536 1 1540 223 120 57 chr3 202122935 202123618 -25400960 + MER50 LTR ERV1 9 734 0 204 40 0 0 chr3 202123756 202123781 -25400797 + (TTA)n Simple_repeat Simple_repeat 2 26 0 327 278 166 19 chr3 202124095 202124300 -25400278 - MLT1J LTR MaLR -23 488 254 1882 161 3 3 chr3 202124377 202124676 -25399902 - AluJb SINE Alu -13 299 1 244 292 15 0 chr3 202124678 202124743 -25399835 - MLT1J LTR MaLR -337 174 109 476 124 5 2 chr3 202126138 202126338 -25398240 + AluSx SINE Alu 51 296 -15 2192 126 0 10 chr3 202126338 202126648 -25397930 + AluSx SINE Alu 1 307 -5 1328 187 103 0 chr3 202127385 202127647 -25396931 - AluJb SINE Alu -21 291 3 1679 166 0 7 chr3 202128416 202128694 -25395884 + AluJb SINE Alu 1 276 -36 2414 86 0 0 chr3 202128795 202129098 -25395480 - AluSq SINE Alu -10 303 1 23 0 0 0 chr3 202129102 202129125 -25395453 + AT_rich Low_complexity Low_complexity 1 23 0 307 87 0 0 chr3 202129238 202129284 -25395294 + MADE1 DNA Mariner 1 46 -34 621 87 29 29 chr3 202129728 202129831 -25394747 + AluY SINE Alu 196 298 -13 1954 131 3 42 chr3 202130877 202131183 -25393395 - AluSx SINE Alu -18 294 1 262 295 29 104 chr3 202131771 202131944 -25392634 + MIR3 SINE MIR 34 193 -15 239 351 63 0 chr3 202132587 202132698 -25391880 - MIR SINE MIR -60 202 85 1576 153 20 8 chr3 202133026 202133280 -25391298 + MER47B DNA MER2_type 162 418 0 2132 128 3 0 chr3 202134693 202134990 -25389588 - AluSq SINE Alu -11 302 5 417 135 0 68 chr3 202135040 202135114 -25389464 + MLT1D LTR MaLR 1 69 -436 * 2256 149 98 0 chr3 202135110 202135507 -25389071 - LTR47A LTR ERVL -16 436 1 713 245 134 61 chr3 202135508 202136034 -25388544 + MLT1D LTR MaLR 65 626 0 260 244 207 17 chr3 202136356 202136549 -25388029 - MIR SINE MIR -6 256 30 1259 232 109 2 chr3 202136663 202137059 -25387519 + L1MD3 LINE L1 2439 2876 -3270 820 145 8 0 chr3 202137061 202137178 -25387400 + FLAM_C SINE Alu 1 118 -15 30 45 0 0 chr3 202137178 202137222 -25387356 + AT_rich Low_complexity Low_complexity 1 44 0 6365 133 11 3 chr3 202137233 202138605 -25385973 - L1PB1 LINE L1 -8 6143 4763 42 36 0 0 chr3 202138606 202138662 -25385916 + AT_rich Low_complexity Low_complexity 1 56 0 4101 240 63 37 chr3 202138666 202138799 -25385779 + L1MD3 LINE L1 2872 3000 -3146 1583 146 23 105 chr3 202138799 202139141 -25385437 + AluYb8 SINE Alu 1 314 -4 4101 240 63 37 chr3 202139141 202140539 -25384039 + L1MD3 LINE L1 3000 4443 -1703 3341 216 77 18 chr3 202140520 202140836 -25383742 + L1MD3 LINE L1 4858 5154 -992 * 1574 193 3 20 chr3 202140836 202141132 -25383446 + AluJo SINE Alu 1 291 -21 3341 216 77 18 chr3 202141132 202141165 -25383413 + L1MD3 LINE L1 5154 5184 -962 2155 139 0 0 chr3 202141165 202141460 -25383118 + AluSx SINE Alu 1 295 -17 3341 216 77 18 chr3 202141460 202142484 -25382094 + L1MD3 LINE L1 5184 5399 -747 8797 171 38 6 chr3 202142491 202144032 -25380546 + MSTB-int LTR MaLR 61 1651 0 2329 175 36 19 chr3 202144033 202144451 -25380127 + MSTB LTR MaLR 2 426 0 2387 224 27 37 chr3 202144468 202145093 -25379485 + L1MC4a LINE L1 6365 6983 -825 1904 239 83 18 chr3 202145141 202145674 -25378904 + MER77 LTR ERV1 77 615 -4 853 233 51 13 chr3 202145688 202145763 -25378815 + L1MD3 LINE L1 7033 7104 -891 1234 201 131 23 chr3 202145763 202146022 -25378556 + AluJo SINE Alu 2 288 -14 853 233 51 13 chr3 202146022 202146182 -25378396 + L1MD3 LINE L1 7104 7277 -718 550 224 78 0 chr3 202146183 202146299 -25378279 + MLT1F1 LTR MaLR 1 125 -442 2613 186 48 6 chr3 202146299 202146836 -25377742 + L1MD3 LINE L1 7410 7969 -26 1349 206 75 123 chr3 202146854 202146971 -25377607 + L1ME1 LINE L1 5476 5597 -569 1418 196 28 7 chr3 202146971 202147256 -25377322 + AluJb SINE Alu 3 293 -19 1349 206 75 123 chr3 202147256 202147741 -25376837 + L1ME1 LINE L1 5597 6049 -117 719 263 50 6 chr3 202147739 202147918 -25376660 - L1PB4 LINE L1 -4 6152 5966 * 189 0 0 0 chr3 202148794 202148815 -25375763 + (CA)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chr3 202148876 202148897 -25375681 + AT_rich Low_complexity Low_complexity 1 21 0 289 270 70 30 chr3 202149346 202149446 -25375132 - L2 LINE L2 -14 3299 3196 214 314 0 14 chr3 202150211 202150281 -25374297 + L2 LINE L2 1179 1247 -2067 2075 116 4 0 chr3 202150322 202150599 -25373979 + AluSx SINE Alu 1 278 -34 281 0 82 0 chr3 202150610 202150659 -25373919 + (CAA)n Simple_repeat Simple_repeat 2 54 0 449 233 82 19 chr3 202150742 202150901 -25373677 + HAL1b LINE L1 292 460 -888 282 310 0 18 chr3 202150907 202151020 -25373558 - MER5A DNA MER1_type 0 189 79 559 290 137 19 chr3 202151067 202151329 -25373249 + HAL1b LINE L1 471 763 -585 232 195 149 46 chr3 202151417 202151504 -25373074 - MIR SINE MIR -26 236 141 232 259 302 0 chr3 202151840 202151956 -25372622 - MER5A DNA MER1_type -1 188 38 309 244 26 0 chr3 202152482 202152560 -25372018 + MER116 DNA Mariner 1 80 0 2157 82 41 3 chr3 202152560 202152854 -25371724 - AluSp SINE Alu -7 306 2 262 316 84 0 chr3 202152916 202153011 -25371567 + L2 LINE L2 3206 3308 -5 2448 73 7 0 chr3 202153483 202153786 -25370792 - AluSg SINE Alu -2 308 4 609 206 154 42 chr3 202153999 202154213 -25370365 - MIR SINE MIR -22 240 3 308 301 60 71 chr3 202155163 202155346 -25369232 - L3 LINE CR1 -80 1497 1317 31 0 0 0 chr3 202159379 202159410 -25365168 + AT_rich Low_complexity Low_complexity 1 31 0 22 0 0 0 chr3 202159597 202159619 -25364959 + AT_rich Low_complexity Low_complexity 1 22 0 276 120 0 0 chr3 202160760 202160810 -25363768 + (A)n Simple_repeat Simple_repeat 1 50 0 1579 192 10 10 chr3 202163066 202163357 -25361221 - AluJo SINE Alu -19 293 3 371 257 153 17 chr3 202164949 202165190 -25359388 + L1MC/D LINE L1 4744 5017 -1129 615 191 52 0 chr3 202165302 202165417 -25359161 + FLAM_A SINE Alu 1 121 -12 1618 186 3 16 chr3 202165484 202165796 -25358782 + AluJb SINE Alu 3 310 -2 231 36 0 0 chr3 202166241 202166269 -25358309 + (TG)n Simple_repeat Simple_repeat 2 29 0 39 68 0 0 chr3 202166401 202166475 -25358103 + AT_rich Low_complexity Low_complexity 1 74 0 2227 115 0 0 chr3 202166977 202167289 -25357289 + AluSq SINE Alu 1 312 -1 1189 147 50 5 chr3 202167482 202167700 -25356878 - AluSg/x SINE Alu -12 300 73 857 125 0 22 chr3 202168281 202168417 -25356161 + FLAM_C SINE Alu 1 133 0 26 0 0 0 chr3 202168417 202168443 -25356135 + AT_rich Low_complexity Low_complexity 1 26 0 462 228 62 26 chr3 202168522 202168715 -25355863 + L1MC/D LINE L1 5264 5463 -2345 2380 121 33 36 chr3 202170306 202170727 -25353851 + L1PB2 LINE L1 5732 6151 0 239 304 115 62 chr3 202171781 202172024 -25352554 + L2 LINE L2 1916 2171 -1143 1866 143 3 0 chr3 202172051 202172337 -25352241 - AluSx SINE Alu -11 301 15 3080 123 18 26 chr3 202172360 202172856 -25351722 - LTR22B LTR ERVK 0 492 1 211 337 36 0 chr3 202172885 202172968 -25351610 + L2 LINE L2 2202 2287 -1027 1718 206 141 22 chr3 202173989 202174410 -25350168 + MLT2B1 LTR ERVL 2 484 -36 324 0 0 0 chr3 202174410 202174446 -25350132 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 1718 206 141 22 chr3 202174446 202174486 -25350092 + MLT2B1 LTR ERVL 484 518 -2 184 341 73 0 chr3 202175344 202175426 -25349152 + MIR3 SINE MIR 110 197 -11 194 309 18 0 chr3 202175446 202175501 -25349077 + MIR SINE MIR 60 115 -147 1505 169 78 29 chr3 202175567 202175911 -25348667 + MER46B DNA MER2_type 1 236 0 896 234 79 11 chr3 202176369 202176634 -25347944 + MER58B DNA MER1_type 56 338 -3 1525 170 15 11 chr3 202176702 202176972 -25347606 + AluJb SINE Alu 30 300 -12 21 0 0 0 chr3 202177567 202177588 -25346990 + AT_rich Low_complexity Low_complexity 1 21 0 657 254 74 33 chr3 202177949 202178193 -25346385 + LTR16A1 LTR ERVL 200 453 -4 246 227 113 10 chr3 202178615 202178712 -25345866 + LTR33A LTR ERVL 378 484 -39 410 125 45 23 chr3 202179545 202179633 -25344945 - L1MB7 LINE L1 0 6184 6095 1064 236 59 67 chr3 202179665 202180550 -25344028 - L1MEc LINE L1 -3220 2995 2010 417 275 37 67 chr3 202180575 202180844 -25343734 - L1MEc LINE L1 -5109 1287 1027 849 232 36 0 chr3 202180894 202181062 -25343516 - Tigger2 DNA MER2_type -2 2716 2543 252 193 193 11 chr3 202181062 202181150 -25343428 + L1ME2 LINE L1 5863 5966 -198 * 607 264 21 37 chr3 202181136 202181327 -25343251 + L1MA10 LINE L1 5984 6332 -2 188 265 73 29 chr3 202181365 202181433 -25343145 + MIR SINE MIR 122 192 -70 516 254 53 63 chr3 202182329 202182518 -25342060 - MIR SINE MIR -56 206 20 184 286 0 0 chr3 202183044 202183093 -25341485 - L2 LINE L2 -9 3263 3215 221 319 35 62 chr3 202186327 202186471 -25338107 - MIR SINE MIR -101 161 22 1082 125 40 6 chr3 202187916 202188092 -25336486 + L1PA13 LINE L1 5979 6160 -3 2003 108 7 0 chr3 202189458 202189736 -25334842 + AluSx SINE Alu 1 280 -32 189 0 0 0 chr3 202189740 202189761 -25334817 + (CAAAA)n Simple_repeat Simple_repeat 5 25 0 927 176 98 15 chr3 202189788 202189992 -25334586 - MER58A DNA MER1_type -2 222 2 324 120 0 0 chr3 202190682 202190732 -25333846 + (TG)n Simple_repeat Simple_repeat 2 51 0 22 0 0 0 chr3 202190959 202190981 -25333597 + AT_rich Low_complexity Low_complexity 1 22 0 21 57 0 0 chr3 202191275 202191310 -25333268 + AT_rich Low_complexity Low_complexity 1 35 0 21 57 0 0 chr3 202192176 202192211 -25332367 + GC_rich Low_complexity Low_complexity 1 35 0 23 0 0 0 chr3 202192535 202192558 -25332020 + AT_rich Low_complexity Low_complexity 1 23 0 284 283 158 55 chr3 202193265 202193759 -25330819 + L2 LINE L2 2327 2871 -443 212 323 78 72 chr3 202193952 202194119 -25330459 + L2 LINE L2 3102 3269 -3 322 253 142 65 chr3 202195026 202195350 -25329228 - L1ME4a LINE L1 -217 5904 5556 2033 171 43 34 chr3 202196335 202196882 -25327696 + MLT2A2 LTR ERVL 6 554 0 29 28 0 0 chr3 202196946 202196982 -25327596 + AT_rich Low_complexity Low_complexity 1 36 0 369 280 60 54 chr3 202198985 202199153 -25325425 - MER5A DNA MER1_type 0 189 21 1810 111 75 0 chr3 202199493 202199773 -25324805 + AluSp SINE Alu 5 305 -8 280 263 0 26 chr3 202199931 202200007 -25324571 + MER116 DNA Mariner 7 80 0 25 0 0 0 chr3 202201980 202202005 -25322573 + AT_rich Low_complexity Low_complexity 1 25 0 1456 202 42 18 chr3 202202351 202202682 -25321896 - MER58B DNA MER1_type -1 340 2 406 320 139 8 chr3 202203244 202203488 -25321090 - L2 LINE L2 -642 2672 2397 275 354 37 0 chr3 202205692 202205774 -25318804 + MIR3 SINE MIR 82 166 -42 1974 146 0 16 chr3 202206086 202206402 -25318176 + AluSx SINE Alu 1 311 -1 560 22 33 22 chr3 202206402 202206493 -25318085 + (GGAA)n Simple_repeat Simple_repeat 1 92 0 580 209 12 104 chr3 202206570 202206733 -25317845 + MER58D DNA MER1_type 1 148 -238 2039 130 13 0 chr3 202207204 202207511 -25317067 + AluSq SINE Alu 1 311 -2 1586 90 0 0 chr3 202207669 202207869 -25316709 - AluY SINE Alu -13 298 99 2133 210 61 26 chr3 202208880 202209418 -25315160 + Charlie1a DNA MER1_type 13 569 -886 2192 120 0 3 chr3 202209418 202209717 -25314861 + AluSx SINE Alu 1 298 -14 605 176 30 0 chr3 202209735 202209866 -25314712 + Charlie1a DNA MER1_type 1321 1455 0 218 254 0 32 chr3 202210230 202210293 -25314285 - L2 LINE L2 -2 3311 3251 1348 181 84 99 chr3 202211656 202212120 -25312458 - MLT1C LTR MaLR 0 467 11 709 148 94 47 chr3 202212428 202212575 -25312003 - MLT1B LTR MaLR -25 442 289 1334 199 74 71 chr3 202212575 202212937 -25311641 - MLT1A1 LTR MaLR 0 396 3 1155 178 66 54 chr3 202212939 202213198 -25311380 - MLT1B LTR MaLR -158 232 1 453 317 47 39 chr3 202213479 202213772 -25310806 + MLT1I LTR MaLR 93 359 -50 238 235 63 86 chr3 202214500 202214660 -25309918 + MIR SINE MIR 16 170 -63 237 128 0 0 chr3 202214786 202214825 -25309753 + U5 snRNA snRNA 5 43 -73 1478 145 64 54 chr3 202214947 202215243 -25309335 + AluJo SINE Alu 1 299 -13 2388 70 0 17 chr3 202215300 202215601 -25308977 + AluY SINE Alu 1 296 -15 230 179 0 0 chr3 202215602 202215641 -25308937 + L1MC4 LINE L1 6920 6958 -1084 296 223 47 109 chr3 202215705 202215787 -25308791 - L3 LINE CR1 -598 979 893 2403 74 0 7 chr3 202215787 202216086 -25308492 + AluY SINE Alu 1 297 -14 296 223 47 109 chr3 202216086 202216196 -25308382 - L3 LINE CR1 -684 893 799 464 228 14 11 chr3 202216505 202216652 -25307926 + MIR3 SINE MIR 3 202 -6 1344 205 44 24 chr3 202218105 202218398 -25306180 + AluJb SINE Alu 1 299 -3 21 36 0 0 chr3 202218480 202218508 -25306070 + AT_rich Low_complexity Low_complexity 1 28 0 261 0 0 0 chr3 202219376 202219405 -25305173 + (TA)n Simple_repeat Simple_repeat 2 30 0 1785 93 4 12 chr3 202219410 202219658 -25304920 - AluY SINE Alu -29 282 37 210 37 0 0 chr3 202220403 202220430 -25304148 + (TTTTTG)n Simple_repeat Simple_repeat 2 28 0 2417 90 0 0 chr3 202220445 202220755 -25303823 + AluSg SINE Alu 1 310 0 324 348 61 1 chr3 202220762 202220962 -25303616 - L1ME2 LINE L1 -19 6145 5949 602 272 40 13 chr3 202220997 202221225 -25303353 - L1ME2 LINE L1 -204 5960 5727 267 235 51 10 chr3 202221221 202221319 -25303259 - L1ME LINE L1 -5651 419 318 * 459 273 66 35 chr3 202221377 202221575 -25303003 - L1ME LINE L1 -5843 227 24 305 341 92 6 chr3 202221711 202221884 -25302694 + L1ME LINE L1 286 473 -5597 339 309 12 36 chr3 202221910 202222075 -25302503 + L1ME LINE L1 407 567 -5503 234 225 14 42 chr3 202222092 202222163 -25302415 + L1ME LINE L1 660 728 -5342 224 287 93 37 chr3 202222564 202222672 -25301906 + MIR SINE MIR 51 164 -98 1140 173 66 19 chr3 202222757 202223045 -25301533 - MER33 DNA MER1_type -30 294 1 1782 173 147 13 chr3 202223364 202223752 -25300826 - Tigger2 DNA MER2_type 0 2718 2279 349 183 0 0 chr3 202223757 202223817 -25300761 + MER8 DNA MER2_type 179 238 -1 25 0 0 0 chr3 202223855 202223880 -25300698 + AT_rich Low_complexity Low_complexity 1 25 0 1977 159 38 6 chr3 202224828 202225174 -25299404 + MER46B DNA MER2_type 5 236 0 183 80 0 0 chr3 202225348 202225373 -25299205 + (GAAAA)n Simple_repeat Simple_repeat 2 26 0 387 266 101 12 chr3 202226030 202226199 -25298379 + LTR16C LTR ERVL 210 393 -98 521 247 66 70 chr3 202226446 202226689 -25297889 + L1MC5 LINE L1 5342 5583 -2225 400 200 0 24 chr3 202226743 202226828 -25297750 + L1MC5 LINE L1 5783 5865 -1943 22 56 0 0 chr3 202226962 202226998 -25297580 + AT_rich Low_complexity Low_complexity 1 36 0 1557 156 3 84 chr3 202227036 202227178 -25297400 + AluJo SINE Alu 3 155 -157 1736 159 35 0 chr3 202227178 202227461 -25297117 + AluSc SINE Alu 1 293 -16 1557 156 3 84 chr3 202227461 202227652 -25296926 + AluJo SINE Alu 155 309 -3 223 229 0 57 chr3 202227652 202227722 -25296856 + GA-rich Low_complexity Low_complexity 5 70 0 28 71 0 0 chr3 202227872 202227928 -25296650 + AT_rich Low_complexity Low_complexity 1 56 0 1367 192 45 116 chr3 202228062 202228667 -25295911 + L1MC5 LINE L1 6709 7270 -691 886 196 117 0 chr3 202228668 202228847 -25295731 - MER46A DNA MER2_type -5 231 32 456 231 60 0 chr3 202228959 202229076 -25295502 + L1MC5 LINE L1 7322 7445 -516 1483 148 62 62 chr3 202229223 202229562 -25295016 + L1MB2 LINE L1 5446 5784 -387 6068 151 13 13 chr3 202229563 202231617 -25292961 + L1PB1 LINE L1 4104 6151 0 936 192 68 43 chr3 202231614 202231912 -25292666 + L1MB2 LINE L1 5754 6012 -159 * 434 152 38 0 chr3 202231923 202232002 -25292576 + AluSg/x SINE Alu 218 299 -11 2079 91 42 11 chr3 202232133 202232420 -25292158 - AluSx SINE Alu -16 296 1 628 132 18 0 chr3 202232537 202232651 -25291927 + L1MA4 LINE L1 6173 6288 -12 231 125 0 0 chr3 202232951 202232991 -25291587 + (CA)n Simple_repeat Simple_repeat 2 41 0 284 264 23 11 chr3 202233549 202233636 -25290942 + GA-rich Low_complexity Low_complexity 2 89 0 2214 99 0 16 chr3 202234562 202234875 -25289703 + AluSq SINE Alu 1 308 -5 32 67 0 0 chr3 202234923 202234983 -25289595 + AT_rich Low_complexity Low_complexity 1 60 0 2278 95 0 0 chr3 202235722 202236026 -25288552 + AluSq SINE Alu 1 304 -9 21 0 0 0 chr3 202236534 202236555 -25288023 + AT_rich Low_complexity Low_complexity 1 21 0 1636 163 27 14 chr3 202236597 202236891 -25287687 + AluJb SINE Alu 1 298 -14 361 251 160 43 chr3 202236957 202237066 -25287512 - Charlie7 DNA MER1_type -1882 730 635 2101 128 0 3 chr3 202237066 202237362 -25287216 - AluSx SINE Alu -17 295 1 361 251 160 43 chr3 202237362 202237483 -25287095 - Charlie7 DNA MER1_type -1977 635 473 2182 100 13 6 chr3 202237483 202237794 -25286784 - AluSp SINE Alu 0 313 1 287 299 124 6 chr3 202237850 202238027 -25286551 - Charlie7 DNA MER1_type -2101 511 314 1217 193 88 17 chr3 202238031 202238402 -25286176 + MSTC LTR MaLR 1 428 0 357 302 123 19 chr3 202238418 202238630 -25285948 - Charlie7 DNA MER1_type -2295 317 84 21 36 0 0 chr3 202240423 202240451 -25284127 + AT_rich Low_complexity Low_complexity 1 28 0 1955 142 0 0 chr3 202240493 202240781 -25283797 + AluSx SINE Alu 24 311 -1 186 170 110 150 chr3 202242347 202242420 -25282158 - MER5B DNA MER1_type -82 96 26 186 103 0 0 chr3 202242420 202242449 -25282129 + (TG)n Simple_repeat Simple_repeat 1 29 0 186 170 110 150 chr3 202242449 202242475 -25282103 - MER5B DNA MER1_type -151 27 1 221 256 0 0 chr3 202243060 202243103 -25281475 - MER91A DNA MER1_type 0 196 154 355 214 89 60 chr3 202243147 202243279 -25281299 + MIR SINE MIR 16 159 -49 351 276 155 0 chr3 202243348 202243464 -25281114 - MER91A DNA MER1_type -43 153 20 24 53 0 0 chr3 202243552 202243590 -25280988 + AT_rich Low_complexity Low_complexity 1 38 0 812 231 10 40 chr3 202244517 202244716 -25279862 - MER58A DNA MER1_type -28 196 4 25 83 0 0 chr3 202245772 202245832 -25278746 + AT_rich Low_complexity Low_complexity 1 60 0 199 220 125 135 chr3 202246267 202246467 -25278111 - L2 LINE L2 -67 3246 3049 1921 116 0 82 chr3 202247908 202248236 -25276342 - AluSx SINE Alu -11 301 1 200 315 69 31 chr3 202248494 202248624 -25275954 + MIR3 SINE MIR 48 182 -26 306 0 0 0 chr3 202248712 202248746 -25275832 + (TA)n Simple_repeat Simple_repeat 2 35 0 1970 151 0 0 chr3 202248746 202249045 -25275533 - AluSx SINE Alu -13 299 1 1899 96 39 36 chr3 202249361 202249642 -25274936 + AluSg SINE Alu 2 283 -27 180 0 0 0 chr3 202249642 202249662 -25274916 + (CA)n Simple_repeat Simple_repeat 2 21 0 2275 182 35 27 chr3 202249662 202250184 -25274394 + L1MA8 LINE L1 4805 5330 -816 786 199 0 0 chr3 202250186 202250322 -25274256 + AluJo SINE Alu 1 136 -176 1621 129 89 31 chr3 202250328 202250654 -25273924 + L1MA8 LINE L1 5313 5657 -643 774 193 69 28 chr3 202250630 202250848 -25273730 + L1MA8 LINE L1 6001 6227 -64 * 267 127 0 42 chr3 202250995 202251066 -25273512 + (TA)n Simple_repeat Simple_repeat 2 69 0 1397 167 62 47 chr3 202251066 202251342 -25273236 - AluJb SINE Alu -32 280 1 23 33 0 0 chr3 202251402 202251432 -25273146 + AT_rich Low_complexity Low_complexity 1 30 0 1788 170 0 11 chr3 202251436 202251719 -25272859 + AluJo SINE Alu 1 280 -32 195 42 0 0 chr3 202251733 202251757 -25272821 + (TAA)n Simple_repeat Simple_repeat 2 25 0 227 269 15 0 chr3 202252603 202252670 -25271908 + MLT1J LTR MaLR 92 159 -352 206 338 78 21 chr3 202252961 202253103 -25271475 + L2 LINE L2 2327 2476 -838 585 256 19 12 chr3 202253429 202253589 -25270989 + MIR SINE MIR 99 259 -3 378 256 200 8 chr3 202254615 202255104 -25269474 + L1MB2 LINE L1 2521 3103 -3043 406 224 24 91 chr3 202255490 202255636 -25268942 + L1MB2 LINE L1 4864 4993 -1153 2027 118 24 0 chr3 202255636 202255924 -25268654 + AluSp SINE Alu 1 295 -18 406 224 24 91 chr3 202255924 202255987 -25268591 + L1MB2 LINE L1 4993 5059 -1087 180 0 0 0 chr3 202256068 202256088 -25268490 + (A)n Simple_repeat Simple_repeat 1 20 0 1940 105 17 10 chr3 202256121 202256415 -25268163 + AluSx SINE Alu 1 296 -16 925 82 75 0 chr3 202256963 202257109 -25267469 - MER30 DNA MER1_type -73 157 1 21 0 0 0 chr3 202257126 202257147 -25267431 + AT_rich Low_complexity Low_complexity 1 21 0 2203 177 62 8 chr3 202257828 202258226 -25266352 + L1MB2 LINE L1 5662 6092 -79 2234 190 38 36 chr3 202258226 202258700 -25265878 - MER66A LTR ERV1 -3 475 1 2203 177 62 8 chr3 202258700 202258782 -25265796 + L1MB2 LINE L1 6092 6168 -3 33 25 0 0 chr3 202258805 202258845 -25265733 + AT_rich Low_complexity Low_complexity 1 40 0 2549 217 81 8 chr3 202258863 202259472 -25265106 - MER82 DNA MER2_type 0 653 1 2133 94 25 3 chr3 202260071 202260357 -25264221 + AluSp SINE Alu 1 292 -21 1235 189 56 62 chr3 202260463 202260573 -25264005 - MER58B DNA MER1_type -2083 337 228 2346 71 13 13 chr3 202260573 202260881 -25263697 + AluY SINE Alu 1 308 -3 1235 189 56 62 chr3 202260881 202261109 -25263469 - MER58B DNA MER1_type -2192 228 1 514 245 191 5 chr3 202261305 202261493 -25263085 + MER58A DNA MER1_type 1 223 -1 411 299 90 24 chr3 202261654 202261865 -25262713 + ERVL LTR ERVL 1883 2107 -3657 276 340 9 0 chr3 202262074 202262180 -25262398 + ERVL LTR ERVL 2310 2416 -3069 434 256 50 0 chr3 202262239 202262380 -25262198 + ERVL LTR ERVL 2509 2673 -2998 2066 101 7 17 chr3 202262392 202262690 -25261888 - AluSq SINE Alu -18 295 1 463 225 136 0 chr3 202262691 202262860 -25261718 + Tigger6 DNA MER2_type 1404 1595 -2 211 250 36 54 chr3 202263135 202263191 -25261387 - L2 LINE L2 -15 3257 3203 635 204 63 28 chr3 202264309 202264451 -25260127 + MER5A DNA MER1_type 3 149 -40 642 155 29 0 chr3 202264507 202264610 -25259968 + U6 snRNA snRNA 2 107 0 529 131 0 0 chr3 202264610 202264694 -25259884 + L1MA3 LINE L1 6222 6305 0 1445 177 107 27 chr3 202265131 202265783 -25258795 - L1M4 LINE L1 -584 5594 4907 214 294 141 55 chr3 202266113 202266276 -25258302 + L3 LINE CR1 1339 1515 -62 23 68 0 0 chr3 202269238 202269282 -25255296 + AT_rich Low_complexity Low_complexity 1 44 0 407 201 53 0 chr3 202269325 202269430 -25255148 - L1MC4 LINE L1 -253 7742 7555 217 326 105 66 chr3 202269586 202269767 -25254811 + MIR SINE MIR 5 192 -70 657 94 47 19 chr3 202269827 202269933 -25254645 + HY1 scRNA scRNA 2 110 -2 433 296 9 9 chr3 202270159 202270274 -25254304 + MIR SINE MIR 30 144 -64 2285 98 0 3 chr3 202271354 202271659 -25252919 + AluSq SINE Alu 1 304 -9 342 320 131 0 chr3 202271839 202271992 -25252586 + L2 LINE L2 3140 3312 -1 2398 75 0 3 chr3 202273410 202273705 -25250873 + AluSc SINE Alu 1 294 -15 2247 106 3 7 chr3 202273845 202274147 -25250431 + AluSx SINE Alu 1 301 -11 1836 113 18 7 chr3 202274715 202274998 -25249580 - AluSx SINE Alu -11 301 16 2134 97 3 10 chr3 202275004 202275294 -25249284 - AluSq SINE Alu -25 288 1 2206 91 0 18 chr3 202275344 202275630 -25248948 - AluSg SINE Alu -15 295 15 241 390 48 0 chr3 202275763 202275909 -25248669 - MER5B DNA MER1_type -1 177 25 207 323 229 10 chr3 202275934 202276030 -25248548 - MIR3 SINE MIR -49 159 43 2154 81 0 4 chr3 202276139 202276446 -25248132 + AluSc SINE Alu 9 314 0 374 203 8 42 chr3 202276534 202276652 -25247926 + L1ME4a LINE L1 5711 5824 -297 308 228 11 33 chr3 202276691 202276783 -25247795 + L1ME4a LINE L1 5951 6040 -81 250 229 0 0 chr3 202277515 202277563 -25247015 + MIR SINE MIR 51 98 -164 2193 95 0 0 chr3 202277724 202278009 -25246569 + AluSx SINE Alu 1 285 -27 2285 100 3 0 chr3 202278149 202278448 -25246130 + AluSx SINE Alu 1 300 -12 243 0 0 0 chr3 202278448 202278475 -25246103 + (TA)n Simple_repeat Simple_repeat 2 28 0 * 306 0 0 0 chr3 202278474 202278508 -25246070 + (GA)n Simple_repeat Simple_repeat 2 35 0 708 252 173 10 chr3 202278723 202278956 -25245622 - MIR SINE MIR -1 261 1 181 327 96 29 chr3 202278966 202279070 -25245508 + L2 LINE L2 3160 3270 -2 253 209 30 0 chr3 202279229 202279296 -25245282 - MLT1J2 LTR MaLR -28 422 354 2205 110 0 7 chr3 202279726 202280026 -25244552 + AluSx SINE Alu 1 298 -14 2277 95 0 0 chr3 202280033 202280337 -25244241 + AluSq SINE Alu 1 304 -9 21 0 0 0 chr3 202280845 202280866 -25243712 + AT_rich Low_complexity Low_complexity 1 21 0 1639 163 27 14 chr3 202280908 202281202 -25243376 + AluJb SINE Alu 1 298 -14 292 229 82 60 chr3 202281268 202281378 -25243200 - Charlie7 DNA MER1_type -1882 730 613 2103 129 0 3 chr3 202281378 202281672 -25242906 - AluSx SINE Alu -19 293 1 292 229 82 60 chr3 202281672 202281744 -25242834 - Charlie7 DNA MER1_type -1999 613 544 2165 100 13 10 chr3 202281793 202282104 -25242474 - AluSp SINE Alu -1 312 1 253 260 115 10 chr3 202282240 202282336 -25242242 - Charlie7 DNA MER1_type -2193 419 314 1150 186 95 25 chr3 202282340 202282712 -25241866 + MSTC LTR MaLR 1 428 0 278 287 100 20 chr3 202282790 202282940 -25241638 - Charlie7 DNA MER1_type -2367 245 84 21 36 0 0 chr3 202284737 202284765 -25239813 + AT_rich Low_complexity Low_complexity 1 28 0 2013 127 0 0 chr3 202284807 202285083 -25239495 + AluSx SINE Alu 24 299 -13 964 173 32 16 chr3 202286643 202286828 -25237750 - MER5A DNA MER1_type -1 188 1 2371 97 0 0 chr3 202288120 202288418 -25236160 + AluSq SINE Alu 1 298 -15 1992 134 30 13 chr3 202288755 202289053 -25235525 - AluSp SINE Alu -10 303 1 4899 145 44 5 chr3 202289054 202289945 -25234633 - L1MC1 LINE L1 -6 6327 5402 1461 139 115 24 chr3 202289950 202290288 -25234290 - THE1C LTR MaLR -6 369 1 504 175 8 24 chr3 202290290 202290416 -25234162 - L1MC1 LINE L1 -927 5406 5283 819 148 0 8 chr3 202290469 202290597 -25233981 - AluJb SINE Alu -185 127 1 1554 175 36 4 chr3 202290606 202290886 -25233692 - AluJb SINE Alu -23 289 1 2129 224 158 3 chr3 202290886 202291645 -25232933 - L1MC1 LINE L1 -1141 5005 4129 816 125 26 20 chr3 202291889 202292041 -25232537 - L1 LINE L1 -1523 4623 4471 2223 101 3 7 chr3 202292054 202292351 -25232227 + AluSg SINE Alu 1 296 -14 1013 285 77 28 chr3 202292979 202293175 -25231403 - L1MC4a LINE L1 -1780 6028 5843 2142 109 0 10 chr3 202293175 202293477 -25231101 - AluSq SINE Alu -14 299 1 1013 285 77 28 chr3 202293477 202293915 -25230663 - L1MC4a LINE L1 -1965 5843 5363 853 180 22 45 chr3 202294023 202294245 -25230333 - L1ME2 LINE L1 -10 6154 5938 358 225 20 60 chr3 202294262 202294413 -25230165 - L1ME3 LINE L1 -71 6091 5947 1150 224 92 19 chr3 202294495 202294865 -25229713 - L1ME3 LINE L1 -393 5769 5373 2241 110 0 3 chr3 202294902 202295201 -25229377 - AluSx SINE Alu -14 298 1 1910 168 0 0 chr3 202295688 202295986 -25228592 - AluSx SINE Alu -12 300 3 2178 102 0 7 chr3 202296212 202296507 -25228071 - AluY SINE Alu -14 297 5 2295 94 7 3 chr3 202298175 202298482 -25226096 + AluSg SINE Alu 1 308 -2 228 86 0 0 chr3 202298520 202298555 -25226023 + (TTTTTG)n Simple_repeat Simple_repeat 2 36 0 528 297 41 20 chr3 202298756 202299002 -25225576 - L1ME1 LINE L1 -5 6161 5911 493 226 9 0 chr3 202299014 202299120 -25225458 + MLT1D LTR MaLR 1 107 -398 405 259 68 27 chr3 202299250 202299470 -25225108 + MLT1D LTR MaLR 132 360 -145 917 212 18 0 chr3 202299471 202299636 -25224942 - AluJb SINE Alu -8 304 137 656 201 6 31 chr3 202299636 202299795 -25224783 + MLT1D LTR MaLR 351 505 0 346 191 22 11 chr3 202299830 202299919 -25224659 - L1ME1 LINE L1 -361 5805 5716 278 264 64 8 chr3 202299982 202300107 -25224471 - L1ME3 LINE L1 -773 5373 5242 288 154 0 0 chr3 202300128 202300180 -25224398 + (TG)n Simple_repeat Simple_repeat 1 52 0 244 344 5 5 chr3 202300648 202300787 -25223791 + C-rich Low_complexity Low_complexity 2 215 0 2407 106 0 0 chr3 202300962 202301274 -25223304 + AluSx SINE Alu 1 312 0 507 290 103 27 chr3 202301312 202301456 -25223122 + L1MC/D LINE L1 5355 5487 -677 2322 74 3 7 chr3 202301456 202301754 -25222824 + AluSg SINE Alu 1 297 -13 507 290 103 27 chr3 202301754 202302043 -25222535 + L1MC/D LINE L1 5487 5825 -339 237 208 0 20 chr3 202302221 202302297 -25222281 + HAL1 LINE L1 2094 2164 -343 2083 158 0 19 chr3 202302322 202302638 -25221940 + AluJo SINE Alu 3 312 0 1366 97 0 0 chr3 202302682 202302867 -25221711 + AluY SINE Alu 119 303 -8 2337 118 0 0 chr3 202302898 202303211 -25221367 + AluSp SINE Alu 1 313 0 1928 141 39 0 chr3 202303475 202303759 -25220819 - AluSx SINE Alu -17 295 1 2328 85 3 3 chr3 202304215 202304509 -25220069 - AluSc SINE Alu -15 294 1 2130 106 35 0 chr3 202305177 202305459 -25219119 + AluSg SINE Alu 1 292 -18 386 174 83 66 chr3 202305958 202306079 -25218499 - L2 LINE L2 -5 3308 3186 1278 197 13 13 chr3 202306103 202306342 -25218236 + AluJo SINE Alu 63 301 -11 717 109 0 0 chr3 202306810 202306911 -25217667 + AluSg/x SINE Alu 207 307 -5 1616 151 0 0 chr3 202307176 202307414 -25217164 + AluSx SINE Alu 57 294 -18 2022 157 171 65 chr3 202307429 202308124 -25216454 + pTR5 LTR ERV1 743 1708 -730 234 0 0 0 chr3 202308288 202308314 -25216264 + (TTTG)n Simple_repeat Simple_repeat 2 27 0 2111 102 22 0 chr3 202308315 202308589 -25215989 - AluSx SINE Alu -32 280 1 506 282 90 13 chr3 202308616 202308772 -25215806 - MLT1J LTR MaLR -251 260 93 1586 195 10 13 chr3 202308799 202309082 -25215496 + AluJo SINE Alu 1 284 -28 270 0 0 0 chr3 202309082 202309112 -25215466 + (CA)n Simple_repeat Simple_repeat 2 31 0 1586 195 10 13 chr3 202309112 202309131 -25215447 + AluJo SINE Alu 284 302 -10 198 300 117 0 chr3 202309596 202309716 -25214862 - L2 LINE L2 -584 2730 2597 442 229 97 131 chr3 202309719 202309801 -25214777 - HAL1 LINE L1 -851 1656 1573 647 208 23 0 chr3 202309801 202309931 -25214647 + FLAM_A SINE Alu 1 133 0 442 229 97 131 chr3 202309931 202310139 -25214439 - HAL1 LINE L1 -934 1573 1384 2236 106 0 0 chr3 202310139 202310431 -25214147 + AluSx SINE Alu 4 295 -17 442 229 97 131 chr3 202310431 202310581 -25213997 - HAL1 LINE L1 -1123 1384 1230 444 277 12 30 chr3 202310804 202310823 -25213755 - L1MA10 LINE L1 0 6334 6316 1033 253 56 31 chr3 202310823 202311147 -25213431 - L1ME3 LINE L1 -4 6158 5827 747 95 9 0 chr3 202311148 202311253 -25213325 - AluSp/q SINE Alu -4 309 204 547 159 0 30 chr3 202311259 202311383 -25213195 - L1ME1 LINE L1 -340 5826 5718 302 196 0 0 chr3 202311386 202311437 -25213141 + MER66B LTR ERV1 295 345 -141 2175 127 3 0 chr3 202311467 202311766 -25212812 + AluSp SINE Alu 1 300 -13 615 228 69 59 chr3 202311766 202312124 -25212454 - L1ME1 LINE L1 -691 5471 5118 2304 85 14 0 chr3 202312124 202312418 -25212160 - AluY SINE Alu -13 298 1 615 228 69 59 chr3 202312418 202312675 -25211903 - L1ME1 LINE L1 -1044 5118 4865 2119 116 7 23 chr3 202312675 202312985 -25211593 - AluSx SINE Alu -7 305 1 615 228 69 59 chr3 202312985 202313318 -25211260 - L1ME1 LINE L1 -1297 4865 4537 2564 77 0 0 chr3 202313318 202313629 -25210949 - AluY SINE Alu 0 311 1 615 228 69 59 chr3 202313629 202314375 -25210203 - L1ME1 LINE L1 -1625 4537 3622 952 203 60 70 chr3 202314541 202314786 -25209792 + MLT1A1 LTR MaLR 54 298 -67 1937 90 102 0 chr3 202314786 202315062 -25209516 - AluSq SINE Alu 0 302 1 952 203 60 70 chr3 202315062 202315130 -25209448 + MLT1A1 LTR MaLR 298 365 0 995 289 34 3 chr3 202315387 202315681 -25208897 + L2 LINE L2 2156 2458 -856 2090 120 3 16 chr3 202315683 202315992 -25208586 - AluSq SINE Alu -8 305 1 334 232 0 0 chr3 202315992 202316048 -25208530 - AluJ/monomer SINE Alu -245 56 1 319 326 161 38 chr3 202316053 202316112 -25208466 + L2 LINE L2 2692 2742 -571 2545 60 0 0 chr3 202316112 202316413 -25208165 - AluY SINE Alu -9 302 2 319 326 161 38 chr3 202316413 202316678 -25207900 + L2 LINE L2 2742 3052 -261 526 256 31 0 chr3 202316678 202316807 -25207771 + AluJo SINE Alu 105 237 -75 6598 128 149 101 chr3 202316809 202318429 -25206149 + pTR5 LTR ERV1 741 2438 0 803 284 9 9 chr3 202318544 202318762 -25205816 + MLT1J LTR MaLR 110 327 -184 233 198 308 11 chr3 202318942 202319033 -25205545 + L2 LINE L2 3192 3309 -4 2393 82 0 13 chr3 202319844 202320148 -25204430 - AluSg SINE Alu -9 301 2 2369 82 0 3 chr3 202320262 202320555 -25204023 - AluSx SINE Alu -19 293 2 2296 96 3 0 chr3 202321009 202321301 -25203277 + AluSp SINE Alu 2 294 -19 2047 116 11 3 chr3 202322433 202322753 -25201825 + AluSq SINE Alu 1 322 0 1855 111 96 4 chr3 202323051 202323322 -25201256 + AluSx SINE Alu 6 301 -11 357 43 0 0 chr3 202324372 202324419 -25200159 + (TG)n Simple_repeat Simple_repeat 2 48 0 329 91 0 0 chr3 202324419 202324463 -25200115 - AluSx SINE Alu -17 285 242 1994 117 4 0 chr3 202324463 202324728 -25199850 - AluSx SINE Alu -46 266 1 243 0 0 0 chr3 202324734 202324761 -25199817 + (TG)n Simple_repeat Simple_repeat 2 28 0 * 450 53 0 0 chr3 202324760 202324817 -25199761 + (TA)n Simple_repeat Simple_repeat 2 58 0 2435 48 3 7 chr3 202324817 202325108 -25199470 - AluY SINE Alu -21 290 1 215 265 0 0 chr3 202325211 202325260 -25199318 - L2 LINE L2 -80 3233 3185 434 242 199 0 chr3 202325466 202325627 -25198951 - MER112 DNA MER1_type -2 258 66 1852 111 11 32 chr3 202325726 202326006 -25198572 - AluSq SINE Alu -39 274 1 1767 144 21 21 chr3 202326640 202326925 -25197653 + AluJb SINE Alu 6 290 -22 21 0 0 0 chr3 202326937 202326958 -25197620 + AT_rich Low_complexity Low_complexity 1 21 0 1636 183 4 4 chr3 202327125 202327404 -25197174 + AluJb SINE Alu 14 292 -20 1595 196 14 3 chr3 202327738 202328029 -25196549 + AluJb SINE Alu 2 295 -17 2084 106 0 61 chr3 202328663 202328975 -25195603 + AluSx SINE Alu 1 293 -19 22 35 0 0 chr3 202329360 202329389 -25195189 + AT_rich Low_complexity Low_complexity 1 29 0 645 157 14 41 chr3 202329409 202329556 -25195022 + FRAM SINE Alu 21 163 -13 2434 70 0 17 chr3 202329616 202329917 -25194661 + AluY SINE Alu 1 296 -15 233 179 0 0 chr3 202329918 202329957 -25194621 + L1MC4 LINE L1 6920 6958 -1084 216 223 47 109 chr3 202330021 202330103 -25194475 - L3 LINE CR1 -598 979 893 2446 74 0 7 chr3 202330103 202330402 -25194176 + AluY SINE Alu 1 297 -14 216 223 47 109 chr3 202330402 202330512 -25194066 - L3 LINE CR1 -684 893 799 436 197 15 12 chr3 202330834 202330968 -25193610 + MIR3 SINE MIR 16 202 -6 1315 197 46 25 chr3 202332429 202332713 -25191865 + AluJb SINE Alu 9 298 -14 21 36 0 0 chr3 202332795 202332823 -25191755 + AT_rich Low_complexity Low_complexity 1 28 0 405 0 0 0 chr3 202333690 202333735 -25190843 + (TA)n Simple_repeat Simple_repeat 2 46 0 2184 76 0 28 chr3 202333740 202334030 -25190548 - AluY SINE Alu -29 282 1 2163 117 3 0 chr3 202334093 202334383 -25190195 - AluSp SINE Alu -20 293 3 1283 128 5 11 chr3 202335355 202335542 -25189036 - AluJo SINE Alu -126 186 1 396 190 190 14 chr3 202335590 202335732 -25188846 - Charlie1a DNA MER1_type -1248 207 41 505 301 31 50 chr3 202335770 202336028 -25188550 - MLT1I LTR MaLR -111 298 59 1907 125 48 3 chr3 202336630 202336919 -25187659 + AluSg SINE Alu 4 305 -5 2008 105 22 4 chr3 202336921 202337197 -25187381 + AluSp SINE Alu 1 281 -32 240 35 0 0 chr3 202337197 202337226 -25187352 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 416 272 44 25 chr3 202337470 202337628 -25186950 + LTR67 LTR ERVL 383 543 -14 180 289 0 0 chr3 202337643 202337695 -25186883 - MIR SINE MIR -113 149 98 1021 214 186 30 chr3 202337815 202338110 -25186468 + MER58B DNA MER1_type 1 341 0 253 303 112 13 chr3 202339237 202339389 -25185189 - MIR3 SINE MIR -4 204 38 1285 130 225 11 chr3 202339533 202339809 -25184769 + MER1B DNA MER1_type 3 337 0 1859 103 46 8 chr3 202339949 202340212 -25184366 + AluSq SINE Alu 4 276 -37 180 243 0 43 chr3 202341219 202341289 -25183289 + L2 LINE L2 3167 3233 -80 2160 117 31 0 chr3 202341342 202341633 -25182945 + AluSx SINE Alu 1 300 -12 653 183 16 8 chr3 202342136 202342262 -25182316 - FLAM_A SINE Alu -6 127 1 465 271 120 71 chr3 202342660 202342966 -25181612 - L1MC4a LINE L1 -1893 5915 5575 2258 113 0 0 chr3 202342966 202343276 -25181302 - AluSx SINE Alu -2 310 1 465 271 120 71 chr3 202343276 202343459 -25181119 - L1MC4a LINE L1 -2233 5575 5402 347 186 109 123 chr3 202343515 202343715 -25180863 - L1ME3 LINE L1 -140 6034 5824 259 158 105 53 chr3 202343713 202343808 -25180770 - L1ME3 LINE L1 -2369 5439 5340 * 1547 164 94 118 chr3 202344076 202344465 -25180113 + Tigger6a DNA MER2_type 375 749 -848 1797 182 0 0 chr3 202344465 202344762 -25179816 + AluJb SINE Alu 1 297 -15 1547 164 94 118 chr3 202344762 202344895 -25179683 + Tigger6a DNA MER2_type 749 884 -199 1191 159 0 0 chr3 202344897 202345073 -25179505 - AluSg/x SINE Alu -7 305 130 277 289 135 0 chr3 202345712 202345816 -25178762 + L2 LINE L2 2609 2726 -588 2177 106 0 0 chr3 202345871 202346154 -25178424 - AluSp SINE Alu -30 283 1 2142 67 3 100 chr3 202346154 202346320 -25178258 - AluSg SINE Alu -13 297 177 2549 51 0 3 chr3 202346320 202346616 -25177962 - AluY SINE Alu -16 295 1 2142 67 3 100 chr3 202346616 202346778 -25177800 - AluSg SINE Alu -133 177 1 246 309 169 41 chr3 202346779 202347286 -25177292 + L2 LINE L2 2727 3313 0 2328 85 3 3 chr3 202347414 202347709 -25176869 - AluSq SINE Alu -18 295 1 2206 131 0 0 chr3 202347764 202348130 -25176448 - AluSx SINE Alu 0 366 1 568 332 46 0 chr3 202348287 202348528 -25176050 + MIR SINE MIR 1 252 -10 1068 76 0 0 chr3 202348841 202348972 -25175606 + AluSg SINE Alu 1 131 -179 2030 117 17 10 chr3 202348976 202349275 -25175303 + AluSx SINE Alu 1 301 -11 976 152 6 6 chr3 202349591 202349769 -25174809 + AluSq SINE Alu 135 312 -1 344 93 56 0 chr3 202349948 202350002 -25174576 - AluJo SINE Alu -11 291 235 1124 170 0 6 chr3 202350006 202350188 -25174390 - AluJo SINE Alu -131 181 1 254 170 43 0 chr3 202350370 202350464 -25174114 + (TA)n Simple_repeat Simple_repeat 2 99 0 2460 77 0 0 chr3 202350495 202350792 -25173786 - AluSg SINE Alu -13 297 1 2308 93 0 0 chr3 202351663 202351953 -25172625 - AluSg SINE Alu -20 290 1 256 366 81 12 chr3 202352404 202352576 -25172002 + MIR SINE MIR 73 256 -6 2154 124 0 3 chr3 202352767 202353065 -25171513 - AluSx SINE Alu -11 301 5 1690 180 13 7 chr3 202353359 202353665 -25170913 - AluJo SINE Alu -4 308 1 556 181 0 0 chr3 202353887 202353981 -25170597 - AluSp/q SINE Alu -7 306 213 1716 106 0 146 chr3 202353981 202354330 -25170248 - pTR5 LTR ERV1 -410 2028 1731 200 308 0 49 chr3 202354333 202354518 -25170060 + C-rich Low_complexity Low_complexity 5 180 0 412 178 27 0 chr3 202355276 202355349 -25169229 + MER58B DNA MER1_type 265 339 -2 758 258 62 62 chr3 202355880 202356030 -25168548 + MIR SINE MIR 3 155 -107 2269 93 3 3 chr3 202356030 202356340 -25168238 + AluSp SINE Alu 1 310 -3 758 258 62 62 chr3 202356340 202356449 -25168129 + MIR SINE MIR 154 262 0 256 339 45 18 chr3 202356929 202357041 -25167537 - MIR SINE MIR -66 142 28 2333 151 29 29 chr3 202357201 202357646 -25166932 - MSTB2 LTR MaLR -12 445 1 1653 192 0 3 chr3 202357915 202358217 -25166361 + AluJo SINE Alu 1 301 -11 2150 85 7 3 chr3 202358370 202358664 -25165914 - AluSx SINE Alu -17 295 1 902 99 0 0 chr3 202358705 202358836 -25165742 - AluSp/q SINE Alu -5 308 178 921 152 0 0 chr3 202358966 202359124 -25165454 + AluSp/q SINE Alu 156 313 0 404 108 0 31 chr3 202359445 202359510 -25165068 + AluS SINE Alu 27 89 -223 2017 108 10 7 chr3 202360120 202360416 -25164162 + AluSx SINE Alu 1 297 -15 1665 154 17 7 chr3 202360927 202361219 -25163359 + AluSx SINE Alu 1 295 -17 1558 166 21 25 chr3 202361328 202361644 -25162934 + AluJo SINE Alu 1 315 0 500 150 0 12 chr3 202362405 202362485 -25162093 + AluSq SINE Alu 2 80 -232 2252 74 0 3 chr3 202362485 202362781 -25161797 + AluY SINE Alu 1 295 -16 1587 107 21 4 chr3 202362779 202363012 -25161566 + AluSq SINE Alu 68 304 -9 * 429 333 94 0 chr3 202365270 202365450 -25159128 - MIR SINE MIR -29 233 37 455 217 26 9 chr3 202365627 202365742 -25158836 - L1M4 LINE L1 -1263 4883 4767 2055 75 39 0 chr3 202365771 202366050 -25158528 - AluSq SINE Alu -23 290 1 1091 252 92 21 chr3 202366060 202366497 -25158081 - L1MEc LINE L1 -4359 2037 1570 1414 140 27 0 chr3 202366497 202366742 -25157836 - AluSx SINE Alu 0 306 56 1552 91 129 23 chr3 202367065 202367328 -25157250 + AluSq SINE Alu 1 291 -22 600 308 144 53 chr3 202367680 202368205 -25156373 - L2 LINE L2 -4 3309 2741 673 81 0 0 chr3 202368513 202368599 -25155979 + AluSp SINE Alu 25 110 -203 2260 88 3 0 chr3 202368760 202369066 -25155512 + AluSq SINE Alu 1 307 -6 188 255 107 54 chr3 202369367 202369490 -25155088 - MIR SINE MIR -36 226 88 2016 96 6 51 chr3 202370034 202370208 -25154370 - AluSq SINE Alu -15 298 143 2310 86 0 0 chr3 202370208 202370512 -25154066 - AluSx SINE Alu -8 304 1 2016 96 6 51 chr3 202370512 202370649 -25153929 - AluSq SINE Alu -170 143 1 1767 129 68 0 chr3 202370806 202371085 -25153493 - AluSx SINE Alu -14 298 1 1906 138 6 3 chr3 202371087 202371398 -25153180 - AluSx SINE Alu 0 312 1 2385 81 0 0 chr3 202371433 202371742 -25152836 - AluSc SINE Alu 0 309 1 2346 55 13 3 chr3 202371753 202372061 -25152517 - AluY SINE Alu 0 311 1 1810 156 0 31 chr3 202372170 202372491 -25152087 - AluJb SINE Alu -1 311 1 1829 183 67 6 chr3 202373044 202373388 -25151190 + MLT1A1 LTR MaLR 1 365 0 1649 158 14 3 chr3 202373517 202373809 -25150769 - AluJb SINE Alu -17 295 1 2031 100 0 7 chr3 202374345 202374624 -25149954 + AluSx SINE Alu 1 277 -35 2166 107 3 0 chr3 202374668 202374967 -25149611 + AluSq SINE Alu 1 300 -13 50 87 0 0 chr3 202375848 202375975 -25148603 + GC_rich Low_complexity Low_complexity 1 127 0 40 59 0 0 chr3 202376410 202376478 -25148100 + GC_rich Low_complexity Low_complexity 1 68 0 274 201 19 69 chr3 202376653 202376812 -25147766 + G-rich Low_complexity Low_complexity 5 155 0 210 37 0 0 chr3 202376949 202376976 -25147602 + (CGG)n Simple_repeat Simple_repeat 3 29 0 278 98 20 0 chr3 202377004 202377055 -25147523 + (CGGG)n Simple_repeat Simple_repeat 1 52 0 32 43 0 0 chr3 202377058 202377104 -25147474 + GC_rich Low_complexity Low_complexity 1 46 0 39 22 0 0 chr3 202377217 202377263 -25147315 + GC_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr3 202377383 202377404 -25147174 + GC_rich Low_complexity Low_complexity 1 21 0 364 271 135 52 chr3 202378432 202378495 -25146083 + MIR SINE MIR 49 105 -157 2138 80 7 13 chr3 202378495 202378819 -25145759 - AluSq SINE Alu 0 313 1 364 271 135 52 chr3 202378819 202378947 -25145631 + MIR SINE MIR 105 256 -6 1888 81 46 59 chr3 202379265 202379572 -25145006 - AluSc SINE Alu -6 303 1 2090 80 35 3 chr3 202379579 202379865 -25144713 - AluSg SINE Alu -14 296 2 1855 122 10 20 chr3 202381070 202381374 -25143204 + AluSq SINE Alu 1 301 -12 195 273 126 63 chr3 202382199 202382342 -25142236 - L2 LINE L2 -463 2851 2700 2115 84 17 3 chr3 202382741 202383040 -25141538 - AluY SINE Alu -8 303 1 2440 164 116 9 chr3 202383283 202383822 -25140756 - L1MD2 LINE L1 -3 7976 6163 475 231 17 17 chr3 202383824 202383941 -25140637 - MLT1F1 LTR MaLR -449 118 2 1914 94 3 50 chr3 202383959 202384281 -25140297 - AluSp SINE Alu 0 308 1 1766 152 23 13 chr3 202384530 202384840 -25139738 + AluSq SINE Alu 1 313 0 1658 152 0 94 chr3 202384854 202384989 -25139589 + AluJb SINE Alu 2 148 -154 1851 137 0 0 chr3 202384989 202385260 -25139318 + AluSg SINE Alu 1 271 -39 1658 152 0 94 chr3 202385260 202385452 -25139126 + AluJb SINE Alu 148 298 -4 351 0 0 0 chr3 202385474 202385513 -25139065 + (TA)n Simple_repeat Simple_repeat 1 39 0 2161 92 0 7 chr3 202385515 202385808 -25138770 - AluSg SINE Alu -19 291 1 1766 137 14 14 chr3 202386176 202386469 -25138109 - AluSp SINE Alu -18 295 3 206 299 93 31 chr3 202387083 202387180 -25137398 + L2 LINE L2 3172 3274 -39 1623 154 17 20 chr3 202387360 202387658 -25136920 - AluJo SINE Alu -15 297 1 800 181 3 132 chr3 202388232 202388344 -25136234 + L1MD3 LINE L1 6896 7021 -974 2056 104 14 7 chr3 202388344 202388641 -25135937 + AluSg SINE Alu 1 299 -11 800 181 3 132 chr3 202388641 202388832 -25135746 + L1MD3 LINE L1 7021 7160 -835 736 242 22 17 chr3 202388833 202389011 -25135567 + FRAM SINE Alu 1 175 -1 251 120 0 40 chr3 202389023 202389073 -25135505 + (GGGGA)n Simple_repeat Simple_repeat 4 51 0 249 33 0 0 chr3 202389073 202389103 -25135475 + (CAAGC)n Simple_repeat Simple_repeat 3 32 0 519 202 17 17 chr3 202389105 202389224 -25135354 + L1MD3 LINE L1 7159 7277 -718 2281 71 10 7 chr3 202389952 202390247 -25134331 - AluSq SINE Alu -17 296 1 521 246 16 40 chr3 202390680 202390806 -25133772 + L3b LINE CR1 1372 1494 -89 1980 109 13 16 chr3 202391263 202391566 -25133012 + AluSp SINE Alu 1 302 -11 200 240 0 13 chr3 202391942 202392017 -25132561 + C-rich Low_complexity Low_complexity 6 79 0 1977 117 24 3 chr3 202392398 202392696 -25131882 + AluSq SINE Alu 2 305 -8 276 30 0 0 chr3 202392749 202392782 -25131796 + (CA)n Simple_repeat Simple_repeat 2 34 0 1210 112 32 5 chr3 202393534 202393721 -25130857 + AluSq SINE Alu 105 296 -17 25 31 0 0 chr3 202393943 202393975 -25130603 + AT_rich Low_complexity Low_complexity 1 32 0 198 0 0 0 chr3 202394204 202394226 -25130352 + (T)n Simple_repeat Simple_repeat 1 22 0 814 67 50 0 chr3 202394880 202394999 -25129579 - AluSq/x SINE Alu -187 125 1 1341 184 96 7 chr3 202394999 202395270 -25129308 - AluJb SINE Alu -17 295 1 233 270 44 44 chr3 202395537 202395696 -25128882 - MLT1J1 LTR MaLR -280 166 8 640 161 95 0 chr3 202395753 202395921 -25128657 - AluSc SINE Alu -21 288 105 1144 91 34 0 chr3 202396035 202396210 -25128368 + AluSq SINE Alu 113 293 -20 750 212 14 0 chr3 202396221 202396367 -25128211 + FRAM SINE Alu 1 148 -18 254 221 44 29 chr3 202396514 202396582 -25127996 + MLT1K LTR MaLR 512 580 -8 1100 169 0 55 chr3 202396582 202396855 -25127723 + AluSg SINE Alu 30 287 -23 2136 99 3 0 chr3 202397170 202397464 -25127114 + AluSg SINE Alu 1 295 -15 297 250 0 48 chr3 202397768 202397872 -25126706 - L1ME LINE L1 -297 5824 5726 313 330 172 18 chr3 202498373 202498646 -25025932 - L2 LINE L2 -1210 2104 1790 2000 100 3 7 chr3 202498947 202499236 -25025342 + AluSc SINE Alu 1 288 -21 460 326 111 67 chr3 202499272 202500258 -25024320 + L2 LINE L2 1836 2864 -450 329 286 0 0 chr3 202500324 202500401 -25024177 - MER63 DNA MER1_type 0 1062 986 2871 79 16 0 chr3 202500401 202500779 -25023799 + MER41A LTR ERV1 1 384 -170 261 0 0 0 chr3 202501305 202501334 -25023244 + (T)n Simple_repeat Simple_repeat 1 29 0 425 273 98 7 chr3 202501456 202501599 -25022979 - MIR SINE MIR -105 157 2 2740 177 39 4 chr3 202501610 202502102 -25022476 + LTR22 LTR ERVK 1 509 0 394 153 94 24 chr3 202502354 202502439 -25022139 + LTR9 LTR ERV1 1 91 -521 6640 65 34 26 chr3 202502447 202503565 -25021013 - L1PA6 LINE L1 0 6154 5020 367 327 2 17 chr3 202503599 202503944 -25020634 + C-rich Low_complexity Low_complexity 1 339 0 291 311 13 46 chr3 202504345 202504496 -25020082 - LTR67 LTR ERVL 0 557 412 2630 147 22 2 chr3 202504500 202504916 -25019662 + MSTB LTR MaLR 1 424 -2 241 265 73 0 chr3 202505225 202505293 -25019285 - LTR67 LTR ERVL -482 75 3 1937 348 73 24 chr3 202505416 202506849 -25017729 + ERVL LTR ERVL 3768 5260 -504 213 178 0 0 chr3 202506893 202506938 -25017640 + GA-rich Low_complexity Low_complexity 1 45 0 2606 148 40 90 chr3 202507415 202508230 -25016348 - Tigger3b DNA MER2_type -458 774 2 378 219 97 32 chr3 202508273 202508428 -25016150 + L1ME4a LINE L1 5955 6119 -2 358 191 36 12 chr3 202508538 202508622 -25015956 - L2 LINE L2 -2 3311 3226 2044 107 10 49 chr3 202508700 202509008 -25015570 + AluSx SINE Alu 2 297 -15 861 39 0 39 chr3 202509013 202509142 -25015436 + (GAAA)n Simple_repeat Simple_repeat 1 124 0 180 216 78 0 chr3 202509233 202509284 -25015294 + MIR SINE MIR 101 155 -107 3290 175 107 45 chr3 202511172 202511348 -25013230 - L1M4c LINE L1 -5388 996 832 2220 158 19 27 chr3 202511348 202511715 -25012863 + THE1B LTR MaLR 1 364 0 3290 175 107 45 chr3 202511715 202512316 -25012262 - L1M4c LINE L1 -5552 832 171 1916 137 58 71 chr3 202512320 202512700 -25011878 + THE1C LTR MaLR 1 375 0 231 336 103 9 chr3 202512801 202512917 -25011661 - MIR3 SINE MIR -67 141 15 255 61 0 0 chr3 202513498 202513531 -25011047 + (GAAAA)n Simple_repeat Simple_repeat 3 35 0 765 306 174 33 chr3 202514396 202514517 -25010061 - MLT1K LTR MaLR -31 557 454 1834 144 41 14 chr3 202514517 202514808 -25009770 + AluSx SINE Alu 1 299 -13 765 306 174 33 chr3 202514808 202515173 -25009405 - MLT1K LTR MaLR -134 454 2 588 189 0 27 chr3 202515775 202515787 -25008791 - FLAM_A SINE Alu -169 142 131 2298 93 7 10 chr3 202515787 202516097 -25008481 - AluSp SINE Alu -4 309 1 588 189 0 27 chr3 202516097 202516195 -25008383 - FLAM_A SINE Alu -180 131 35 211 271 78 12 chr3 202516272 202516352 -25008226 - MIR SINE MIR -96 112 34 551 163 7 113 chr3 202517101 202517186 -25007392 + MER94 DNA DNA 4 70 -64 1739 186 14 3 chr3 202517186 202517481 -25007097 - AluJb SINE Alu -14 298 1 551 163 7 113 chr3 202517481 202517536 -25007042 + MER94 DNA DNA 70 129 -5 204 338 94 25 chr3 202517809 202517969 -25006609 + L2 LINE L2 2943 3113 -159 2229 98 3 16 chr3 202518788 202519095 -25005483 + AluSc SINE Alu 1 303 -6 2068 206 15 15 chr3 202519095 202519498 -25005080 + PABL_A-int LTR ERV1 6531 6933 -1986 420 230 0 63 chr3 202519486 202519612 -25004966 + PABL_A-int LTR ERV1 6844 6961 -457 * 256 141 16 31 chr3 202519592 202519656 -25004922 + PABL_A-int LTR ERV1 2383 2445 -2570 * 1909 120 33 7 chr3 202519656 202519971 -25004607 + AluSx SINE Alu 1 322 0 516 48 0 0 chr3 202519979 202520041 -25004537 + L1PA6 LINE L1 6048 6109 -45 210 218 103 39 chr3 202520298 202520376 -25004202 - MIR SINE MIR -77 185 103 2094 136 0 0 chr3 202520748 202521043 -25003535 - AluSx SINE Alu -17 295 1 2124 122 0 30 chr3 202521884 202522188 -25002390 - AluSq SINE Alu -18 295 1 2412 97 0 0 chr3 202522928 202523237 -25001341 - AluSc SINE Alu 0 309 1 802 274 62 4 chr3 202523344 202523585 -25000993 + MIR SINE MIR 8 262 0 340 251 37 0 chr3 202524743 202524833 -24999745 - MER52A LTR ERV1 -1194 84 18 3604 134 14 7 chr3 202525422 202525980 -24998598 - HSMAR2 DNA Mariner -739 563 2 3843 144 9 20 chr3 202525981 202526415 -24998163 - Ricksha DNA DNA -916 2330 1904 2384 88 0 0 chr3 202526415 202526720 -24997858 - AluY SINE Alu -6 305 1 3843 144 9 20 chr3 202526720 202526918 -24997660 - Ricksha DNA DNA -1342 1904 1705 338 167 0 0 chr3 202526924 202526984 -24997594 + Ricksha DNA DNA 3179 3238 -8 458 294 78 20 chr3 202527064 202527220 -24997358 + LTR33 LTR ERVL 4 176 -345 2550 142 31 17 chr3 202527220 202527443 -24997135 - MSTA LTR MaLR 0 428 195 2279 114 0 0 chr3 202527443 202527740 -24996838 - AluSx SINE Alu -15 297 1 2550 142 31 17 chr3 202527740 202527938 -24996640 - MSTA LTR MaLR -233 195 1 458 294 78 20 chr3 202527938 202527985 -24996593 + LTR33 LTR ERVL 176 219 -302 1315 233 6 0 chr3 202528230 202528552 -24996026 + L1P LINE L1 2804 3127 -3019 * 1478 143 4 31 chr3 202528541 202528799 -24995779 + L1P LINE L1 3878 4128 -2018 2277 106 0 10 chr3 202528850 202529162 -24995416 + AluSx SINE Alu 1 309 -3 339 287 11 0 chr3 202530875 202530969 -24993609 + MER81 DNA DNA 20 114 0 1546 190 21 28 chr3 202531505 202531795 -24992783 - AluJo SINE Alu -24 288 1 192 135 0 0 chr3 202532767 202532804 -24991774 + (TAA)n Simple_repeat Simple_repeat 2 38 0 5153 150 7 9 chr3 202532949 202533976 -24990602 - L1PA12 LINE L1 -4246 3338 2304 424 190 0 0 chr3 202533999 202534099 -24990479 - L1P LINE L1 -3019 3127 3028 313 102 0 0 chr3 202534094 202534143 -24990435 - L1PA12 LINE L1 -5278 2303 2255 * 334 218 26 0 chr3 202534147 202534225 -24990353 - L2 LINE L2 -2738 576 497 2861 160 11 2 chr3 202534240 202534703 -24989875 - L1PA12 LINE L1 -5328 2253 1787 31 0 0 0 chr3 202534916 202534947 -24989631 + GC_rich Low_complexity Low_complexity 1 31 0 882 225 37 5 chr3 202535361 202535579 -24988999 + L1ME LINE L1 5540 5764 -357 251 256 26 0 chr3 202535580 202535658 -24988920 + MER116 DNA Mariner 1 80 0 2340 85 0 7 chr3 202535787 202536082 -24988496 - AluY SINE Alu -18 293 1 2098 126 0 13 chr3 202536087 202536388 -24988190 - AluSx SINE Alu -15 297 1 877 204 121 18 chr3 202536389 202536717 -24987861 + L1ME3 LINE L1 5583 6027 -135 583 269 35 128 chr3 202536833 202537238 -24987340 + LTR67 LTR ERVL 1 367 -190 195 170 0 0 chr3 202537826 202537873 -24986705 + T-rich Low_complexity Low_complexity 1 47 0 918 110 0 0 chr3 202537874 202538001 -24986577 - L1MA2 LINE L1 0 6304 6178 5677 98 18 8 chr3 202538039 202538798 -24985780 - L1PA11 LINE L1 0 6174 5408 2021 84 0 0 chr3 202538807 202539058 -24985520 - AluY SINE Alu -17 294 44 652 198 43 12 chr3 202539059 202539221 -24985357 + L1PA11 LINE L1 5925 6091 -83 2016 221 111 2 chr3 202539547 202540041 -24984537 - L1MC4 LINE L1 -145 7897 7350 277 109 36 0 chr3 202540489 202540544 -24984034 + GA-rich Low_complexity Low_complexity 1 57 0 269 87 0 22 chr3 202541613 202541659 -24982919 + (TC)n Simple_repeat Simple_repeat 2 46 0 2078 102 36 0 chr3 202541938 202542241 -24982337 - AluSq SINE Alu 0 313 1 978 159 103 52 chr3 202542788 202543040 -24981538 + ORSL DNA AcHobo 10 274 -1 2265 97 0 3 chr3 202543135 202543423 -24981155 - AluSg SINE Alu -15 295 9 281 327 19 19 chr3 202543445 202543549 -24981029 + MER5A DNA MER1_type 82 185 -4 24 32 0 0 chr3 202544366 202544397 -24980181 + AT_rich Low_complexity Low_complexity 1 31 0 489 335 84 0 chr3 202545307 202545498 -24979080 + MIR SINE MIR 46 252 -10 209 306 69 14 chr3 202545671 202545743 -24978835 + L2 LINE L2 3136 3211 -61 2000 139 0 29 chr3 202545896 202546212 -24978366 + AluJo SINE Alu 6 312 0 541 178 50 0 chr3 202546313 202546414 -24978164 + U6 snRNA snRNA 1 106 -1 2125 100 3 14 chr3 202546432 202546722 -24977856 + AluSx SINE Alu 1 287 -25 630 217 35 0 chr3 202546919 202547062 -24977516 + MER69 DNA AcHobo 504 651 -575 2189 127 0 0 chr3 202547086 202547386 -24977192 + AluSg SINE Alu 1 300 -10 738 312 144 18 chr3 202547403 202547861 -24976717 + MLT1G1 LTR MaLR 79 594 -1 306 345 64 15 chr3 202548016 202548219 -24976359 - L2 LINE L2 -1575 1739 1527 12229 55 9 2 chr3 202548373 202550248 -24974330 - L1P2 LINE L1 -450 5704 3820 309 51 0 0 chr3 202550787 202550826 -24973752 + (CA)n Simple_repeat Simple_repeat 1 39 0 2260 106 0 6 chr3 202551223 202551535 -24973043 + AluSx SINE Alu 1 310 -2 340 243 186 28 chr3 202551720 202552046 -24972532 + L1MC/D LINE L1 5415 5799 -371 23 33 0 0 chr3 202552267 202552297 -24972281 + AT_rich Low_complexity Low_complexity 1 30 0 180 278 135 24 chr3 202555634 202555760 -24968818 + MIR3 SINE MIR 19 158 -50 336 228 11 54 chr3 202555812 202555904 -24968674 + MER103 DNA DNA 36 123 -43 229 275 50 0 chr3 202555983 202556063 -24968515 + MIR3 SINE MIR 119 202 -6 273 328 56 56 chr3 202556394 202556589 -24967989 - MIR3 SINE MIR -2 206 12 309 51 0 0 chr3 202557473 202557512 -24967066 + (CA)n Simple_repeat Simple_repeat 2 40 0 199 197 0 28 chr3 202557512 202557583 -24966995 + (TA)n Simple_repeat Simple_repeat 2 70 0 463 271 6 39 chr3 202557584 202557765 -24966813 + (CATATA)n Simple_repeat Simple_repeat 5 179 0 2365 170 39 5 chr3 202557765 202558171 -24966407 + MER7C DNA MER2_type 2 421 -181 297 154 19 0 chr3 202558187 202558239 -24966339 + MER7C DNA MER2_type 369 421 -181 674 140 9 9 chr3 202558240 202558347 -24966231 - AluSq/x SINE Alu -205 108 2 5595 149 7 8 chr3 202558348 202559207 -24965371 + HUERS-P3 LTR ERV1 2427 3284 -5635 586 170 67 22 chr3 202559201 202559336 -24965242 + HUERS-P3 LTR ERV1 4540 4680 -4239 * 5004 78 30 26 chr3 202559938 202560626 -24963952 + LTR8 LTR ERV1 1 691 0 31 0 0 0 chr3 202561158 202561189 -24963389 + GC_rich Low_complexity Low_complexity 1 31 0 2046 115 45 3 chr3 202561622 202561909 -24962669 + AluSq SINE Alu 1 299 -14 3503 125 2 28 chr3 202562183 202562758 -24961820 - L1PA12 LINE L1 -215 5953 5398 207 0 0 0 chr3 202563203 202563226 -24961352 + (T)n Simple_repeat Simple_repeat 1 23 0 330 115 0 0 chr3 202563631 202563683 -24960895 + (A)n Simple_repeat Simple_repeat 1 52 0 4775 192 14 18 chr3 202564009 202564896 -24959682 + L1PA12 LINE L1 19 901 -6680 1862 139 11 0 chr3 202564965 202565238 -24959340 + AluSx SINE Alu 1 276 -36 255 202 106 67 chr3 202565238 202565333 -24959245 - U3 snRNA snRNA -6 211 110 10981 118 11 21 chr3 202565681 202567339 -24957239 - L1P LINE L1 -4483 1663 22 1930 206 46 13 chr3 202567352 202567746 -24956832 + LTR9B LTR ERV1 95 501 -143 324 260 6 58 chr3 202567803 202567976 -24956602 + (CCCCG)n Simple_repeat Simple_repeat 1 164 0 1491 208 24 61 chr3 202568409 202568788 -24955790 - MLT1A1 LTR MaLR 0 365 1 2288 104 0 3 chr3 202569177 202569485 -24955093 - AluSx SINE Alu -5 307 1 255 364 10 10 chr3 202569568 202569667 -24954911 - MIR SINE MIR -90 118 20 2044 113 22 4 chr3 202569748 202570061 -24954517 - AluSc SINE Alu 0 318 1 526 176 0 39 chr3 202570285 202570387 -24954191 + MLT1B LTR MaLR 1 98 -292 302 250 277 0 chr3 202570866 202571014 -24953564 - MER5A DNA MER1_type 0 189 1 1666 217 35 14 chr3 202571071 202571440 -24953138 - LTR9B LTR ERV1 -261 383 7 565 204 13 26 chr3 202571498 202571586 -24952992 + L1PB4 LINE L1 5923 6010 -146 4652 57 5 18 chr3 202571586 202572184 -24952394 + LTR10C LTR ERV1 1 590 -1 565 204 13 26 chr3 202572184 202572247 -24952331 + L1PB4 LINE L1 6010 6072 -84 1682 160 149 26 chr3 202572686 202573029 -24951549 - LTR47A LTR ERVL -67 385 1 1974 105 6 67 chr3 202573321 202573634 -24950944 - AluSx SINE Alu -18 294 1 222 269 0 0 chr3 202574070 202574122 -24950456 + CT-rich Low_complexity Low_complexity 1 52 0 245 248 234 0 chr3 202574831 202574968 -24949610 + L1ME4a LINE L1 5953 6121 0 212 370 63 8 chr3 202575240 202575367 -24949211 + MIR SINE MIR 38 171 -91 289 258 110 7 chr3 202575579 202575732 -24948846 - MIR SINE MIR -64 144 25 258 288 99 0 chr3 202576550 202576661 -24947917 - MIR SINE MIR -123 139 18 203 0 0 36 chr3 202577141 202577169 -24947409 + (TTTA)n Simple_repeat Simple_repeat 2 28 0 2153 106 0 0 chr3 202577181 202577455 -24947123 - AluSx SINE Alu -38 274 1 2881 184 24 32 chr3 202577587 202577887 -24946691 - L1MCa LINE L1 -5821 605 311 2565 116 8 3 chr3 202577887 202578249 -24946329 - THE1B LTR MaLR 0 364 1 2881 184 24 32 chr3 202578249 202578541 -24946037 - L1MCa LINE L1 -6115 311 18 245 245 208 0 chr3 202578552 202578691 -24945887 - MIR SINE MIR -56 206 38 218 293 17 0 chr3 202579793 202579851 -24944727 - MIR SINE MIR -140 122 64 2478 60 3 0 chr3 202579869 202580167 -24944411 + AluY SINE Alu 1 299 -12 62 111 0 0 chr3 202580476 202580620 -24943958 + AT_rich Low_complexity Low_complexity 1 144 0 25 0 0 0 chr3 202580678 202580703 -24943875 + AT_rich Low_complexity Low_complexity 1 25 0 225 156 50 21 chr3 202580717 202580858 -24943720 + A-rich Low_complexity Low_complexity 3 147 0 5065 160 2 5 chr3 202581020 202581105 -24943473 - L1 LINE L1 -1801 4345 4261 2224 77 3 17 chr3 202581105 202581403 -24943175 - AluY SINE Alu -17 294 1 5065 160 2 5 chr3 202581403 202582181 -24942397 - L1 LINE L1 -1885 4261 3484 277 227 26 46 chr3 202582218 202582305 -24942273 - L1MC4a LINE L1 -985 6800 6707 203 370 56 32 chr3 202582500 202582838 -24941740 + L2 LINE L2 2398 2743 -571 1320 155 118 59 chr3 202582920 202583144 -24941434 + Charlie1b DNA MER1_type 1 249 -2512 2582 59 3 0 chr3 202583144 202583448 -24941130 + AluSx SINE Alu 3 307 -5 1320 155 118 59 chr3 202583448 202583527 -24941051 + Charlie1b DNA MER1_type 249 322 -201 27 0 0 0 chr3 202586479 202586506 -24938072 + GC_rich Low_complexity Low_complexity 1 27 0 1504 173 72 4 chr3 202587602 202587879 -24936699 - AluJo SINE Alu -16 296 1 632 139 10 20 chr3 202588208 202588228 -24936350 + AluSp SINE Alu 114 133 -180 192 40 0 0 chr3 202588228 202588253 -24936325 + (CA)n Simple_repeat Simple_repeat 2 26 0 632 139 10 20 chr3 202588253 202588333 -24936245 + AluSp SINE Alu 133 213 -100 3639 168 18 42 chr3 202588352 202588578 -24936000 - HSMAR2 DNA Mariner -1 1301 1071 2446 79 0 16 chr3 202588578 202588894 -24935684 - AluY SINE Alu 0 311 1 3639 168 18 42 chr3 202588894 202589407 -24935171 - HSMAR2 DNA Mariner -231 1071 580 242 186 13 38 chr3 202590223 202590382 -24934196 + CT-rich Low_complexity Low_complexity 1 154 0 6816 135 95 11 chr3 202590751 202591875 -24932703 - THE1C-int LTR MaLR -358 1222 4 675 168 109 10 chr3 202591877 202592081 -24932497 - THE1C LTR MaLR 0 375 146 299 269 10 17 chr3 202592728 202592847 -24931731 - MIR SINE MIR -84 124 10 258 156 0 0 chr3 202594175 202594220 -24930358 + (TA)n Simple_repeat Simple_repeat 1 45 0 973 183 6 6 chr3 202595115 202595284 -24929294 + AluJb SINE Alu 129 297 -15 210 274 137 0 chr3 202595718 202595813 -24928765 + L2 LINE L2 3206 3313 0 683 193 48 37 chr3 202596405 202596603 -24927975 - MER6 DNA MER2_type 0 865 -65 1830 108 17 0 chr3 202596610 202596905 -24927673 - L1P LINE L1 -3549 2597 2298 * 3573 219 50 7 chr3 202596903 202597616 -24926962 - L1PA13 LINE L1 -5842 945 202 367 264 109 35 chr3 202597621 202597795 -24926783 - Tigger5 DNA MER2_type -176 2147 4 393 226 28 19 chr3 202598766 202598872 -24925706 + MIR3 SINE MIR 74 180 -28 4374 189 17 41 chr3 202599574 202601015 -24923563 + MER52A LTR ERV1 399 1736 -19 319 122 0 0 chr3 202601022 202601071 -24923507 + HSMAR2 DNA Mariner 571 619 -683 8240 55 4 3 chr3 202601226 202602269 -24922309 + L1P LINE L1 1917 2960 -3186 596 200 23 8 chr3 202602617 202602747 -24921831 + MER94 DNA DNA 2 133 -1 22 35 0 0 chr3 202603689 202603718 -24920860 + GC_rich Low_complexity Low_complexity 1 29 0 553 214 36 0 chr3 202604154 202604266 -24920312 + L1MC1 LINE L1 5976 6091 -242 5786 189 27 20 chr3 202605531 202606636 -24917942 - HUERS-P3b LTR ERV1 -5419 1999 887 349 127 0 0 chr3 202606986 202607041 -24917537 + Alu SINE Alu 248 302 0 1865 58 9 0 chr3 202607187 202607410 -24917168 - AluY SINE Alu -86 225 1 490 296 91 16 chr3 202607428 202607614 -24916964 + L2 LINE L2 3073 3272 0 1611 192 63 0 chr3 202608645 202609007 -24915571 + L1MC1 LINE L1 5197 5586 -743 1881 174 16 52 chr3 202609010 202609373 -24915205 + MLT1A1 LTR MaLR 12 361 -4 2563 157 2 0 chr3 202609378 202609793 -24914785 + L1MC1 LINE L1 5575 5990 -343 2047 125 0 3 chr3 202610198 202610495 -24914083 + AluSq SINE Alu 1 296 -17 2072 98 0 3 chr3 202610501 202610826 -24913752 + AluY SINE Alu 1 324 0 2066 219 27 17 chr3 202610830 202611310 -24913268 + L1P LINE L1 2181 2665 -3481 26 0 0 0 chr3 202611434 202611460 -24913118 + AT_rich Low_complexity Low_complexity 1 26 0 2516 56 0 0 chr3 202611460 202611766 -24912812 - AluY SINE Alu -5 306 1 304 269 154 0 chr3 202611795 202611899 -24912679 + L2 LINE L2 3193 3312 -1 481 272 96 70 chr3 202612011 202612312 -24912266 + L1ME4a LINE L1 5506 5814 -307 352 244 224 13 chr3 202612328 202612484 -24912094 + L1ME4a LINE L1 5929 6117 -4 224 111 22 0 chr3 202613648 202613693 -24910885 + (TG)n Simple_repeat Simple_repeat 2 47 0 485 201 26 44 chr3 202614022 202614236 -24910342 + HUERS-P3 LTR ERV1 3980 4375 -505 1406 187 16 7 chr3 202614468 202614736 -24909842 + HUERS-P3 LTR ERV1 6851 8919 0 1474 253 78 34 chr3 202614742 202615308 -24909270 + LTR9B LTR ERV1 7 597 -47 360 104 0 0 chr3 202615424 202615472 -24909106 - AluSg/x SINE Alu -125 175 128 2116 95 41 0 chr3 202615482 202615776 -24908802 + AluSq SINE Alu 1 306 -7 469 295 95 0 chr3 202615782 202615992 -24908586 + MARNA DNA Mariner 183 412 -174 2207 107 0 0 chr3 202616795 202617093 -24907485 + AluSq SINE Alu 3 300 -13 284 308 43 5 chr3 202618107 202618220 -24906358 + MIR SINE MIR 62 179 -51 1325 112 0 0 chr3 202618307 202618494 -24906084 - AluSg/x SINE Alu -6 306 120 219 156 67 0 chr3 202618517 202618562 -24906016 + C-rich Low_complexity Low_complexity 2 49 0 25 90 0 0 chr3 202618698 202618765 -24905813 + GC_rich Low_complexity Low_complexity 1 67 0 25 65 0 0 chr3 202618805 202618851 -24905727 + GC_rich Low_complexity Low_complexity 1 46 0 22 35 0 0 chr3 202618933 202618962 -24905616 + GC_rich Low_complexity Low_complexity 1 29 0 1524 110 9 0 chr3 202619215 202619433 -24905145 - AluSp SINE Alu -93 220 1 1656 141 29 62 chr3 202620018 202620359 -24904219 + THE1C LTR MaLR 1 330 -45 2037 103 6 48 chr3 202621899 202622210 -24902368 + L1MA3 LINE L1 5482 5779 -525 1901 195 27 33 chr3 202622211 202622692 -24901886 + L1P LINE L1 4431 4908 -1238 8796 163 12 11 chr3 202722954 202725112 -24799466 + L1PB1 LINE L1 3578 5739 -412 2222 107 0 0 chr3 202725112 202725401 -24799177 + AluSx SINE Alu 10 298 -14 8796 163 12 11 chr3 202725401 202725814 -24798764 + L1PB1 LINE L1 5739 6150 -1 2853 118 73 19 chr3 202725880 202726347 -24798231 + L1MA3 LINE L1 5814 6305 0 438 306 17 30 chr3 202726494 202726726 -24797852 + HAL1b LINE L1 245 473 -875 1753 210 45 47 chr3 202727386 202727852 -24796726 - MER31A LTR ERV1 -4 481 17 1587 155 6 106 chr3 202728157 202728498 -24796080 + AluJo SINE Alu 1 307 -5 1681 159 28 104 chr3 202728524 202728718 -24795860 + MLT1A1 LTR MaLR 1 151 -214 2210 84 3 0 chr3 202728718 202729004 -24795574 - AluSp SINE Alu -22 291 5 1681 159 28 104 chr3 202729004 202729204 -24795374 + MLT1A1 LTR MaLR 151 365 0 209 315 0 0 chr3 202729441 202729495 -24795083 + MER5B DNA MER1_type 1 54 -124 2126 120 10 0 chr3 202729506 202729806 -24794772 + AluSg SINE Alu 1 303 -7 681 226 8 15 chr3 202729822 202729955 -24794623 - MER5B DNA MER1_type -45 133 2 926 206 6 18 chr3 202730064 202730234 -24794344 + FAM SINE Alu 5 172 -3 382 277 48 58 chr3 202730338 202730544 -24794034 + HAL1b LINE L1 614 817 -531 257 274 51 34 chr3 202730854 202731029 -24793549 + L1ME4a LINE L1 5943 6120 -1 2410 94 0 3 chr3 202732598 202732905 -24791673 + AluSp SINE Alu 2 307 -6 286 302 86 9 chr3 202733682 202733798 -24790780 - L2 LINE L2 -4 3268 3144 211 289 150 39 chr3 202733797 202733977 -24790601 + L2 LINE L2 2861 3060 -212 * 1044 168 54 11 chr3 202734050 202734235 -24790343 - MER46A DNA MER2_type 0 236 44 394 226 6 96 chr3 202734340 202734517 -24790061 + L2 LINE L2 3153 3313 0 719 286 64 5 chr3 202735753 202735973 -24788605 - MIR SINE MIR -2 260 28 1880 87 31 12 chr3 202736501 202736755 -24787823 + AluSx SINE Alu 38 296 -16 2193 116 3 3 chr3 202738186 202738497 -24786081 - AluSx SINE Alu -1 311 1 186 128 0 0 chr3 202740081 202740120 -24784458 + (T)n Simple_repeat Simple_repeat 1 39 0 326 206 65 43 chr3 202741166 202741258 -24783320 - MER5A DNA MER1_type -82 107 14 283 232 48 88 chr3 202741634 202741759 -24782819 - L1MC4 LINE L1 -21 8021 7902 22 88 0 0 chr3 202741766 202741823 -24782755 + AT_rich Low_complexity Low_complexity 1 57 0 399 255 11 0 chr3 202742816 202742910 -24781668 - MER5A DNA MER1_type -86 103 9 831 116 0 0 chr3 202742963 202743084 -24781494 - AluSp/q SINE Alu -6 307 187 2045 106 3 34 chr3 202743108 202743433 -24781145 - AluSp SINE Alu 0 316 1 334 214 150 57 chr3 202743441 202743581 -24780997 + MIR SINE MIR 50 202 -60 301 180 0 0 chr3 202744143 202744193 -24780385 - MIR SINE MIR -66 142 93 2117 129 0 3 chr3 202744949 202745251 -24779327 - AluSx SINE Alu -11 301 1 908 118 14 21 chr3 202745342 202745486 -24779092 - L1MA3 LINE L1 0 6305 6163 2176 59 49 53 chr3 202745499 202745803 -24778775 - AluY SINE Alu -8 303 1 8951 174 20 25 chr3 202745803 202746044 -24778534 - L1P LINE L1 -1584 4562 4321 2776 7 0 3 chr3 202746044 202746346 -24778232 - AluYa5 SINE Alu -10 301 1 8951 174 20 25 chr3 202746346 202747919 -24776659 - L1P LINE L1 -1825 4321 2757 195 250 94 62 chr3 202747929 202748057 -24776521 + L2 LINE L2 3174 3305 -8 2252 103 36 0 chr3 202748580 202748882 -24775696 - AluSq SINE Alu 0 313 1 986 227 61 5 chr3 202749271 202749469 -24775109 + MER63A DNA MER1_type 1 209 -1 1792 213 137 30 chr3 202750730 202750835 -24773743 - L1ME2 LINE L1 -13 6151 6059 1957 118 0 64 chr3 202750835 202751149 -24773429 - AluSx SINE Alu -18 294 1 1792 213 137 30 chr3 202751149 202751546 -24773032 - L1ME2 LINE L1 -105 6059 5595 308 246 23 88 chr3 202751559 202751774 -24772804 - L1MC4 LINE L1 -1 8041 7841 1911 167 7 0 chr3 202751784 202752077 -24772501 + AluJb SINE Alu 1 295 -17 1041 226 79 27 chr3 202752087 202752449 -24772129 - L1ME2 LINE L1 -799 5347 4978 951 141 20 45 chr3 202752449 202752648 -24771930 - L1MA9 LINE L1 0 6312 6119 216 0 0 0 chr3 202753672 202753696 -24770882 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 717 180 0 0 chr3 202753696 202753807 -24770771 - FLAM_C SINE Alu -21 122 12 234 0 0 0 chr3 202755028 202755054 -24769524 + (A)n Simple_repeat Simple_repeat 1 26 0 1870 198 59 43 chr3 202756749 202757209 -24767369 - MLT1C LTR MaLR 0 467 1 188 283 22 0 chr3 202757410 202757456 -24767122 - MIR SINE MIR -12 250 204 2177 126 0 10 chr3 202757515 202757824 -24766754 + AluSg SINE Alu 1 306 -4 478 315 35 0 chr3 202757891 202758034 -24766544 - MIR3 SINE MIR -45 163 16 243 333 65 0 chr3 202758257 202758350 -24766228 - L2 LINE L2 -40 3232 3134 2142 123 3 10 chr3 202758372 202758674 -24765904 - AluSq SINE Alu -13 300 1 2311 97 0 3 chr3 202760089 202760397 -24764181 + AluSg SINE Alu 1 307 -3 192 77 0 0 chr3 202760398 202760424 -24764154 + (GGAA)n Simple_repeat Simple_repeat 4 29 0 396 0 0 0 chr3 202760955 202760999 -24763579 + (TG)n Simple_repeat Simple_repeat 2 45 0 197 281 114 61 chr3 202761064 202761178 -24763400 + MIR3 SINE MIR 14 133 -75 2386 106 0 0 chr3 202761481 202761793 -24762785 + AluSx SINE Alu 1 312 0 325 285 66 27 chr3 202762538 202762690 -24761888 - MIR SINE MIR -56 152 50 21 0 0 0 chr3 202762726 202762747 -24761831 + AT_rich Low_complexity Low_complexity 1 21 0 1068 121 0 0 chr3 202762851 202762991 -24761587 + AluSq/x SINE Alu 1 140 -173 443 229 0 0 chr3 202763158 202763263 -24761315 - L1 LINE L1 -1051 5095 4991 243 0 0 0 chr3 202763264 202763291 -24761287 + (TAAAA)n Simple_repeat Simple_repeat 3 29 0 2121 165 0 0 chr3 202763432 202763814 -24760764 - L1 LINE L1 -1137 5009 4628 1052 241 70 9 chr3 202764514 202764829 -24759749 - MER46C DNA MER2_type -4 334 1 1987 240 55 47 chr3 202764920 202765507 -24759071 - Charlie7 DNA MER1_type -560 2052 1454 2860 184 10 8 chr3 202765507 202766024 -24758554 - MLT2B1 LTR ERVL 0 520 3 1987 240 55 47 chr3 202766024 202766300 -24758278 - Charlie7 DNA MER1_type -1158 1454 1182 528 226 161 4 chr3 202766300 202766530 -24758048 - MER20B DNA MER1_type 0 783 518 2121 119 7 0 chr3 202766566 202766852 -24757726 + AluSx SINE Alu 3 290 -22 365 264 271 7 chr3 202766892 202767032 -24757546 - MER5A DNA MER1_type -3 186 10 267 170 0 0 chr3 202767130 202767177 -24757401 - MER46C DNA MER2_type -212 126 80 1166 271 39 10 chr3 202767218 202767606 -24756972 - MER20B DNA MER1_type -383 400 2 529 246 95 47 chr3 202767642 202767755 -24756823 - Charlie7 DNA MER1_type -1462 1150 1044 2696 39 0 0 chr3 202767755 202768064 -24756514 - AluY SINE Alu -2 309 1 529 246 95 47 chr3 202768064 202768182 -24756396 - Charlie7 DNA MER1_type -1568 1044 908 25 75 0 0 chr3 202768213 202768266 -24756312 + AT_rich Low_complexity Low_complexity 1 53 0 195 360 45 27 chr3 202769716 202769827 -24754751 + L3 LINE CR1 52 164 -1413 353 331 41 8 chr3 202769898 202770019 -24754559 - L2 LINE L2 -5 3308 3184 579 345 36 39 chr3 202770678 202771037 -24753541 - L2 LINE L2 -2520 794 437 2229 184 24 77 chr3 202772268 202772851 -24751727 - MLT2B3 LTR ERVL -1 553 2 308 313 47 22 chr3 202774009 202774329 -24750249 + L1ME4a LINE L1 5571 5898 -223 2364 82 7 3 chr3 202774742 202775048 -24749530 + AluY SINE Alu 1 307 -4 349 220 135 14 chr3 202776210 202776351 -24748227 + L1ME4a LINE L1 5960 6117 -4 216 368 38 0 chr3 202776377 202776483 -24748095 + L3 LINE CR1 298 407 -1170 1023 295 147 17 chr3 202776514 202776985 -24747593 + L3 LINE CR1 516 1047 -530 432 130 0 0 chr3 202777630 202777699 -24746879 + (TTCC)n Simple_repeat Simple_repeat 2 70 0 2252 139 11 5 chr3 202778521 202778902 -24745676 + L1MA5A LINE L1 5905 6287 -10 22 0 0 0 chr3 202778977 202778999 -24745579 + AT_rich Low_complexity Low_complexity 1 22 0 2235 88 9 35 chr3 202779000 202779317 -24745261 + AluSc SINE Alu 1 309 0 21 36 0 0 chr3 202779377 202779405 -24745173 + AT_rich Low_complexity Low_complexity 1 28 0 2273 112 0 3 chr3 202780578 202780882 -24743696 + AluSx SINE Alu 1 303 -9 216 279 59 0 chr3 202782390 202782458 -24742120 + MIR3 SINE MIR 130 201 -7 707 187 8 0 chr3 202783511 202783634 -24740944 + FLAM_C SINE Alu 7 130 -13 227 56 56 0 chr3 202783686 202783722 -24740856 + (TTCA)n Simple_repeat Simple_repeat 3 40 0 644 246 180 35 chr3 202783724 202784008 -24740570 - L2 LINE L2 -1 3312 2988 2399 107 0 0 chr3 202784110 202784420 -24740158 + AluSg SINE Alu 1 310 0 398 287 41 25 chr3 202785070 202785192 -24739386 - MIR3 SINE MIR -9 199 76 418 299 58 7 chr3 202785657 202785794 -24738784 + MIR SINE MIR 17 160 -102 201 290 19 37 chr3 202786249 202786356 -24738222 + CT-rich Low_complexity Low_complexity 5 109 0 1653 144 18 42 chr3 202787272 202787556 -24737022 + AluJo SINE Alu 13 289 -23 266 227 18 27 chr3 202787644 202787754 -24736824 - L1MC4 LINE L1 -227 7815 7707 926 222 78 18 chr3 202787768 202788166 -24736412 - L1MC4 LINE L1 -305 7584 7044 293 253 59 129 chr3 202789498 202789668 -24734910 - L2 LINE L2 -8 3264 3107 591 286 22 49 chr3 202790023 202790247 -24734331 - MIR SINE MIR -32 230 13 2268 104 0 0 chr3 202792323 202792620 -24731958 + AluSg SINE Alu 1 297 -13 229 301 12 0 chr3 202793071 202793154 -24731424 + MER112 DNA MER1_type 2 85 -175 334 186 98 20 chr3 202793218 202793320 -24731258 + MER112 DNA MER1_type 80 189 -71 182 288 150 25 chr3 202793466 202793546 -24731032 - MIR3 SINE MIR -49 159 70 204 387 36 0 chr3 202793585 202793722 -24730856 + MIR3 SINE MIR 21 162 -46 1456 246 29 79 chr3 202793956 202794476 -24730102 + L2 LINE L2 2820 3313 0 2306 88 0 3 chr3 202794956 202795253 -24729325 - AluSg SINE Alu -14 296 1 282 268 45 103 chr3 202795606 202795668 -24728910 - L2 LINE L2 -9 3304 3240 1440 232 36 12 chr3 202795668 202796000 -24728578 + MER58B DNA MER1_type 1 340 -1 282 268 45 103 chr3 202796000 202796180 -24728398 - L2 LINE L2 -73 3240 3076 480 307 60 33 chr3 202796450 202796665 -24727913 + MIR SINE MIR 32 252 -10 22 0 0 0 chr3 202797255 202797277 -24727301 + AT_rich Low_complexity Low_complexity 1 22 0 22 111 0 0 chr3 202797293 202797392 -24727186 + AT_rich Low_complexity Low_complexity 1 99 0 238 262 33 0 chr3 202797635 202797696 -24726882 - L3 LINE CR1 -6 1571 1509 202 279 38 38 chr3 202797731 202797810 -24726768 - L3 LINE CR1 -151 1426 1348 528 184 250 20 chr3 202797861 202798013 -24726565 + MER5A DNA MER1_type 1 187 -2 207 278 170 52 chr3 202798039 202798233 -24726345 + MIR SINE MIR 28 244 -18 372 279 0 0 chr3 202798369 202798448 -24726130 - MIR3 SINE MIR -53 155 77 315 247 326 0 chr3 202800454 202800543 -24724035 + MER91A DNA MER1_type 51 168 -28 249 329 174 13 chr3 202800732 202800887 -24723691 - MER91A DNA MER1_type -3 193 14 26 0 0 0 chr3 202802541 202802567 -24722011 + AT_rich Low_complexity Low_complexity 1 26 0 2383 113 0 0 chr3 202802683 202802993 -24721585 + AluSq SINE Alu 2 311 -2 242 345 0 0 chr3 202803137 202803192 -24721386 + MIR SINE MIR 96 150 -58 189 185 19 93 chr3 202804199 202804253 -24720325 - L2 LINE L2 0 3313 3264 262 236 0 69 chr3 202804290 202804362 -24720216 + MIR SINE MIR 30 96 -112 273 255 43 53 chr3 202804848 202804942 -24719636 + MIR3 SINE MIR 115 207 -1 1120 163 169 36 chr3 202805637 202805938 -24718640 + MER2 DNA MER2_type 1 341 -3 723 305 68 56 chr3 202805951 202806479 -24718099 - L2 LINE L2 0 3272 2741 185 315 17 65 chr3 202806628 202806869 -24717709 + L2 LINE L2 2979 3233 -80 183 80 0 0 chr3 202806923 202806948 -24717630 + (TGAA)n Simple_repeat Simple_repeat 4 28 0 861 264 122 30 chr3 202807016 202807526 -24717052 + MLT1H1 LTR MaLR 1 590 0 308 315 117 9 chr3 202807567 202807678 -24716900 - MIR3 SINE MIR -71 137 15 445 274 111 37 chr3 202808754 202809024 -24715554 - MLT1K LTR MaLR 0 588 299 373 370 87 38 chr3 202809230 202809637 -24714941 + L2 LINE L2 1708 2145 -1169 2317 113 3 3 chr3 202809637 202809946 -24714632 - AluSp SINE Alu -4 309 1 373 370 87 38 chr3 202809946 202810035 -24714543 + L2 LINE L2 2145 2228 -1086 837 293 47 20 chr3 202810721 202811018 -24713560 + MLT1I LTR MaLR 41 345 -64 1812 190 0 3 chr3 202811037 202811337 -24713241 + AluJb SINE Alu 3 301 -11 23 0 0 0 chr3 202811337 202811360 -24713218 + AT_rich Low_complexity Low_complexity 1 23 0 1318 262 47 15 chr3 202811363 202811764 -24712814 + LTR52 LTR ERVL 6 419 -2 381 268 0 0 chr3 202811806 202811918 -24712660 + L1ME3A LINE L1 6029 6140 -30 1585 143 76 32 chr3 202811927 202812242 -24712336 + MER44D DNA MER2_type 8 606 -3 5626 86 5 0 chr3 202812420 202813232 -24711346 - L1PA14 LINE L1 0 6161 5346 2047 250 71 7 chr3 202813414 202814407 -24710171 - L1ME3A LINE L1 -192 5978 4925 5232 181 39 16 chr3 202814676 202815702 -24708876 - L1M1 LINE L1 -6499 1066 17 249 297 133 18 chr3 202817448 202817615 -24706963 + MIR SINE MIR 64 247 -15 225 262 69 90 chr3 202818146 202818291 -24706287 - L2 LINE L2 -3 3310 3169 315 0 0 0 chr3 202818606 202818641 -24705937 + (CA)n Simple_repeat Simple_repeat 1 35 0 322 220 20 10 chr3 202818757 202818857 -24705721 + CT-rich Low_complexity Low_complexity 3 103 0 211 273 0 0 chr3 202819348 202819392 -24705186 + polypurine Low_complexity Low_complexity 5 48 0 235 167 30 0 chr3 202820305 202820371 -24704207 + CT-rich Low_complexity Low_complexity 2 69 0 357 392 20 7 chr3 202822284 202822437 -24702141 + L2 LINE L2 3118 3272 0 303 365 0 0 chr3 202822436 202822532 -24702046 - MIR SINE MIR -70 138 43 * 340 50 0 0 chr3 202822640 202822680 -24701898 + (T)n Simple_repeat Simple_repeat 1 40 0 557 239 136 17 chr3 202823454 202823630 -24700948 - MIR SINE MIR 0 262 66 233 250 18 0 chr3 202823878 202823934 -24700644 - tRNA-Gln-CAG tRNA tRNA -14 61 5 1893 156 3 23 chr3 202824065 202824373 -24700205 + AluJb SINE Alu 7 308 -4 2101 136 0 0 chr3 202824651 202824960 -24699618 + AluSx SINE Alu 1 309 -3 353 327 128 11 chr3 202826294 202826560 -24698018 - L2 LINE L2 -562 2752 2456 23 68 0 0 chr3 202827454 202827498 -24697080 + AT_rich Low_complexity Low_complexity 1 44 0 3922 124 60 32 chr3 202828004 202828166 -24696412 - L1MA5 LINE L1 -2 6298 6142 2313 109 0 0 chr3 202828166 202828460 -24696118 + AluSq SINE Alu 1 294 -19 3922 124 60 32 chr3 202828460 202828811 -24695767 - L1MA5 LINE L1 -158 6142 5755 2139 125 143 8 chr3 202828811 202829188 -24695390 - MSTA LTR MaLR 0 428 1 3922 124 60 32 chr3 202829188 202829401 -24695177 - L1MA5 LINE L1 -545 5755 5550 248 301 21 43 chr3 202829707 202829800 -24694778 - MIR SINE MIR -67 141 51 2121 86 4 0 chr3 202830500 202830767 -24693811 - AluY SINE Alu -43 268 1 4470 115 88 53 chr3 202831108 202831902 -24692676 - LTR12 LTR ERV1 0 826 5 1829 197 52 42 chr3 202831918 202832516 -24692062 - pTR5 LTR ERV1 -1094 1344 741 1796 120 58 19 chr3 202833330 202833655 -24690923 + MER44D DNA MER2_type 1 608 -1 5125 197 93 39 chr3 202833668 202834627 -24689951 - L1MB7 LINE L1 -24 6160 5254 1803 176 10 10 chr3 202834627 202834934 -24689644 - AluJo SINE Alu -5 307 1 5125 197 93 39 chr3 202834934 202835136 -24689442 - L1MB7 LINE L1 -930 5254 5064 783 228 29 18 chr3 202835136 202835307 -24689271 - FAM SINE Alu -2 173 1 5125 197 93 39 chr3 202835307 202836904 -24687674 - L1MB7 LINE L1 -1120 5064 3248 26 81 0 0 chr3 202837122 202837159 -24687419 + AT_rich Low_complexity Low_complexity 1 37 0 2051 158 47 37 chr3 202837960 202838440 -24686138 - MER31A LTR ERV1 0 661 1 224 315 65 74 chr3 202838450 202838666 -24685912 + L2 LINE L2 2305 2518 -796 * 667 211 157 0 chr3 202838621 202838768 -24685810 - MER5A DNA MER1_type -6 183 14 275 242 32 32 chr3 202838943 202839038 -24685540 - MER112 DNA MER1_type -16 244 150 417 188 0 0 chr3 202839039 202839124 -24685454 + (AATAG)n Simple_repeat Simple_repeat 5 89 0 495 212 171 41 chr3 202839874 202840044 -24684534 + MIR SINE MIR 71 262 0 217 329 25 25 chr3 202840039 202840118 -24684460 + L2 LINE L2 3194 3272 0 * 204 158 0 0 chr3 202841285 202841323 -24683255 + (TG)n Simple_repeat Simple_repeat 2 39 0 2319 108 0 0 chr3 202842664 202842959 -24681619 - AluSx SINE Alu -17 295 1 611 255 153 0 chr3 202843286 202843443 -24681135 - MER5A DNA MER1_type 0 189 9 1127 129 28 0 chr3 202843616 202843794 -24680784 + L1PA11 LINE L1 5992 6174 0 311 250 31 70 chr3 202844355 202844483 -24680095 + L2 LINE L2 3191 3313 0 3601 152 58 4 chr3 202844573 202845298 -24679280 + L1MA9 LINE L1 4075 4838 -1308 2613 113 63 18 chr3 202845299 202845788 -24678790 + MER4B-int LTR ERV1 2109 2619 -4139 1000 137 0 27 chr3 202845789 202845935 -24678643 + AluSq/x SINE Alu 1 142 -170 290 244 23 47 chr3 202845942 202846028 -24678550 - L2 LINE L2 0 3272 3189 600 133 29 0 chr3 202846031 202846136 -24678442 - MER4B-int LTR ERV1 -4022 2736 2629 * 1711 144 52 32 chr3 202846116 202846485 -24678093 + MER4B-int LTR ERV1 2720 3095 -3663 * 3942 151 25 3 chr3 202846471 202847125 -24677453 + MER4B-int LTR ERV1 3421 4088 -2670 3641 108 16 9 chr3 202847124 202847686 -24676892 + MER4B-int LTR ERV1 4452 5017 -1741 * 2330 176 16 16 chr3 202847686 202848448 -24676130 + L1MA9 LINE L1 4824 5587 -725 * 5659 63 12 8 chr3 202848447 202849269 -24675309 + L1PA6 LINE L1 4559 5383 -763 4010 57 0 0 chr3 202849278 202849771 -24674807 + L1PA6 LINE L1 5662 6154 0 3689 165 25 7 chr3 202849771 202850493 -24674085 + L1MA9 LINE L1 5571 6309 -3 1756 190 0 16 chr3 202850679 202850989 -24673589 - AluJb SINE Alu -7 305 1 25 0 0 0 chr3 202851159 202851184 -24673394 + AT_rich Low_complexity Low_complexity 1 25 0 399 316 32 19 chr3 202852305 202852463 -24672115 + MER5A DNA MER1_type 27 186 -3 279 243 236 29 chr3 202854487 202854627 -24669951 - MIR SINE MIR -12 250 82 2299 96 0 0 chr3 202855122 202855413 -24669165 - AluSx SINE Alu -21 291 1 2045 103 39 4 chr3 202856328 202856609 -24667969 - AluSc SINE Alu -18 291 1 241 375 62 0 chr3 202856841 202856937 -24667641 - L2 LINE L2 -16 3256 3155 2494 65 0 3 chr3 202857043 202857350 -24667228 - AluY SINE Alu -5 306 1 2258 94 13 38 chr3 202858069 202858387 -24666191 - AluSg SINE Alu 0 310 1 224 165 33 187 chr3 202858559 202858650 -24665928 - MER91C DNA MER1_type -30 110 34 239 258 81 0 chr3 202858699 202858761 -24665817 + MIR3 SINE MIR 93 159 -49 29 28 0 0 chr3 202858884 202858920 -24665658 + AT_rich Low_complexity Low_complexity 1 36 0 1985 112 46 23 chr3 202859301 202859606 -24664972 + AluSx SINE Alu 1 312 0 363 234 0 9 chr3 202859633 202859740 -24664838 + (TA)n Simple_repeat Simple_repeat 1 106 0 1027 142 31 12 chr3 202859740 202859902 -24664676 - AluJo SINE Alu -27 285 121 1117 107 0 0 chr3 202860029 202860179 -24664399 - AluSq/x SINE Alu -162 150 1 393 102 0 0 chr3 202861733 202861792 -24662786 + (CA)n Simple_repeat Simple_repeat 2 60 0 345 202 121 20 chr3 202861871 202861970 -24662608 + MLT1K LTR MaLR 473 581 -7 2844 0 0 0 chr3 202862513 202862812 -24661766 + AluYa5 SINE Alu 10 308 -3 1891 127 0 31 chr3 202863330 202863646 -24660932 + AluSg SINE Alu 1 307 0 2256 113 0 0 chr3 202863646 202863956 -24660622 + AluSg SINE Alu 1 310 0 830 197 31 45 chr3 202863956 202864179 -24660399 + MLT1A1 LTR MaLR 146 365 0 843 140 40 27 chr3 202864181 202864331 -24660247 + MLT1A1-int LTR MaLR 20 171 -1564 348 270 0 22 chr3 202864651 202864740 -24659838 + L2 LINE L2 3184 3270 -2 1263 228 34 7 chr3 202865457 202865751 -24658827 - AluJo SINE Alu -9 303 2 1910 112 48 4 chr3 202866219 202866487 -24658091 + AluSx SINE Alu 1 280 -32 225 0 0 0 chr3 202866491 202866516 -24658062 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 1374 338 151 19 chr3 202866519 202868221 -24656357 - L2 LINE L2 -20 3252 1322 254 309 115 7 chr3 202869001 202869140 -24655438 - MIR SINE MIR -89 173 20 517 285 22 0 chr3 202869333 202869470 -24655108 + MER20B DNA MER1_type 40 179 -604 2028 189 141 27 chr3 202869516 202869997 -24654581 + MLT1F LTR MaLR 3 538 -4 438 20 0 0 chr3 202870029 202870080 -24654498 + (TCTA)n Simple_repeat Simple_repeat 2 52 0 289 338 179 7 chr3 202870297 202870442 -24654136 + MER91A DNA MER1_type 1 170 -26 2096 204 23 50 chr3 202870445 202870925 -24653653 - MLT1C LTR MaLR 0 467 1 214 333 77 26 chr3 202872504 202872621 -24651957 + MIR SINE MIR 21 143 -65 557 222 150 0 chr3 202873127 202873283 -24651295 + MER5A DNA MER1_type 6 188 -1 252 0 0 0 chr3 202873580 202873608 -24650970 + (CA)n Simple_repeat Simple_repeat 2 29 0 222 235 39 0 chr3 202873612 202873663 -24650915 - L2 LINE L2 -3 3269 3217 2349 93 0 0 chr3 202874494 202874785 -24649793 + AluSg1 SINE Alu 1 291 -18 5613 149 21 28 chr3 202875210 202876106 -24648472 - L1PBa LINE L1 -3614 3248 2347 571 100 0 0 chr3 202876106 202876186 -24648392 - AluSp/q SINE Alu -4 309 230 5613 149 21 28 chr3 202876186 202877056 -24647522 - L1PBa LINE L1 -4515 2347 1392 908 193 6 0 chr3 202877070 202877236 -24647342 - L1PBa LINE L1 -6696 167 1 1352 71 6 6 chr3 202877247 202877429 -24647149 - L1MA3 LINE L1 -476 5829 5648 2275 109 0 16 chr3 202877445 202877756 -24646822 - AluSg SINE Alu -4 306 1 1520 235 40 43 chr3 202878202 202878250 -24646328 + MLT1J LTR MaLR 112 159 -352 2190 115 0 0 chr3 202878250 202878545 -24646033 + AluSx SINE Alu 14 308 -4 1520 235 40 43 chr3 202878545 202878891 -24645687 + MLT1J LTR MaLR 159 505 -6 668 268 119 0 chr3 202879127 202879362 -24645216 - L1ME3 LINE L1 0 6162 5900 537 305 146 19 chr3 202879380 202879742 -24644836 + LTR16B LTR ERVL 1 369 -95 878 294 87 20 chr3 202879809 202879922 -24644656 - L1ME3 LINE L1 -263 5899 5795 1901 107 89 0 chr3 202879922 202880192 -24644386 + AluSx SINE Alu 1 294 -18 878 294 87 20 chr3 202880192 202880469 -24644109 - L1ME3 LINE L1 -367 5795 5483 1318 242 22 6 chr3 202880577 202880936 -24643642 - L1ME3 LINE L1 -825 5321 4957 2046 119 60 0 chr3 202880979 202881264 -24643314 - AluSx SINE Alu -10 302 1 302 0 26 0 chr3 202882628 202882666 -24641912 + (CA)n Simple_repeat Simple_repeat 2 40 0 436 271 66 90 chr3 202883112 202883400 -24641178 - MLT1J LTR MaLR -230 281 1 905 252 75 39 chr3 202883511 202883765 -24640813 - LTR16A LTR ERVL -11 439 177 2131 42 8 15 chr3 202883935 202884200 -24640378 - AluY SINE Alu -28 283 21 215 196 143 0 chr3 202884233 202884289 -24640289 - MER5C DNA MER1_type 0 324 261 212 253 154 11 chr3 202884425 202884516 -24640062 - MER5C DNA MER1_type -215 109 6 3552 154 52 19 chr3 202884690 202885376 -24639202 - L1MB7 LINE L1 -21 6163 5455 621 261 68 31 chr3 202885503 202885725 -24638853 - MIR SINE MIR -25 237 8 228 111 0 0 chr3 202885741 202885777 -24638801 + (TA)n Simple_repeat Simple_repeat 1 36 0 2242 104 10 0 chr3 202885777 202886086 -24638492 - AluSp SINE Alu -1 312 1 1195 147 56 32 chr3 202886492 202886777 -24637801 - AluSx SINE Alu -15 297 6 2032 122 3 26 chr3 202887148 202887315 -24637263 - AluSx SINE Alu -15 297 139 2427 47 40 0 chr3 202887315 202887614 -24636964 - AluY SINE Alu 0 311 1 2032 122 3 26 chr3 202887614 202887750 -24636828 - AluSx SINE Alu -173 139 1 2285 108 16 0 chr3 202888503 202888810 -24635768 + AluSx SINE Alu 1 312 0 706 169 148 12 chr3 202889544 202889787 -24634791 - AluSg SINE Alu 0 310 35 1823 157 21 0 chr3 202990214 202990514 -24534064 + AluSx SINE Alu 1 306 0 999 241 15 30 chr3 202990543 202990663 -24533915 - L1ME1 LINE L1 -5 6161 6041 2158 114 61 73 chr3 202990663 202991058 -24533520 - MLT1B LTR MaLR 0 390 1 999 241 15 30 chr3 202991058 202991199 -24533379 - L1ME1 LINE L1 -125 6041 5904 1873 150 0 14 chr3 202991964 202992258 -24532320 - AluSq SINE Alu -23 290 1 241 274 32 0 chr3 202992642 202992704 -24531874 - MIR SINE MIR -115 147 84 2106 123 3 7 chr3 202992786 202993088 -24531490 + AluSp SINE Alu 1 301 -12 665 235 12 18 chr3 202993132 202993298 -24531280 + MER117 DNA MER1_type 7 171 -26 254 236 0 82 chr3 202993845 202993955 -24530623 - MLT1H LTR MaLR -17 532 432 250 271 8 51 chr3 202994116 202994234 -24530344 - MLT1H LTR MaLR -387 162 50 269 160 40 0 chr3 202994338 202994388 -24530190 + L2 LINE L2 3262 3313 0 209 258 0 65 chr3 202994748 202994810 -24529768 + L2 LINE L2 3205 3262 -10 183 205 0 0 chr3 202994908 202994947 -24529631 + (TG)n Simple_repeat Simple_repeat 2 40 0 2321 102 0 3 chr3 202995582 202995885 -24528693 + AluSg SINE Alu 1 302 -8 236 239 0 0 chr3 202996459 202996505 -24528073 + MIR SINE MIR 109 154 -108 335 228 98 22 chr3 202996688 202996780 -24527798 + MER20B DNA MER1_type 109 207 -576 3491 80 0 5 chr3 202996915 202996986 -24527592 + L1PB1 LINE L1 5712 5782 -369 2408 91 0 0 chr3 202996986 202997283 -24527295 + AluSg SINE Alu 1 297 -13 3491 80 0 5 chr3 202997283 202997294 -24527284 + L1PB1 LINE L1 5782 5792 -359 309 51 0 0 chr3 202997294 202997333 -24527245 + (CA)n Simple_repeat Simple_repeat 2 40 0 3491 80 0 5 chr3 202997333 202997689 -24526889 + L1PB1 LINE L1 5792 6149 -2 303 28 0 0 chr3 202997892 202997928 -24526650 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 2019 107 36 0 chr3 202998214 202998494 -24526084 + AluSx SINE Alu 1 290 -22 999 183 50 0 chr3 202998495 202998697 -24525881 - MER44D DNA MER2_type -126 483 2 386 306 55 23 chr3 202998784 202999036 -24525542 + MLT1I LTR MaLR 68 332 -114 1652 175 135 22 chr3 202999036 202999391 -24525187 - MSTD LTR MaLR -1 395 1 386 306 55 23 chr3 202999391 202999406 -24525172 + MLT1I LTR MaLR 332 345 -101 461 202 138 0 chr3 202999504 202999613 -24524965 + MER31B LTR ERV1 5 128 -338 2096 163 30 35 chr3 202999614 203000170 -24524408 - MLT2A2 LTR ERVL 0 554 3 1308 175 123 12 chr3 203000172 203000506 -24524072 + MER31A LTR ERV1 110 543 0 218 260 151 0 chr3 203002383 203002456 -24522122 + MIR3 SINE MIR 111 194 -14 351 304 91 16 chr3 203003789 203004032 -24520546 + MLT1L LTR MaLR 354 614 -1 249 345 0 12 chr3 203004034 203004118 -24520460 + MIR SINE MIR 159 241 -21 528 248 20 13 chr3 203004875 203005024 -24519554 + MER103 DNA DNA 6 155 -11 380 370 26 30 chr3 203005201 203005471 -24519107 + L2 LINE L2 2815 3083 -189 25 0 0 0 chr3 203005821 203005846 -24518732 + AT_rich Low_complexity Low_complexity 1 25 0 1661 179 3 47 chr3 203006311 203006630 -24517948 + AluJo SINE Alu 5 309 -3 489 289 66 22 chr3 203007348 203007526 -24517052 - MIR SINE MIR 0 262 69 2014 109 0 14 chr3 203007526 203007862 -24516716 + AluSc SINE Alu 1 332 0 489 289 66 22 chr3 203007862 203007910 -24516668 - MIR SINE MIR -193 69 25 185 294 20 0 chr3 203009117 203009168 -24515410 + MIR SINE MIR 79 130 -132 620 355 59 19 chr3 203009923 203010244 -24514334 - L2 LINE L2 -1 3271 2938 424 353 117 28 chr3 203011076 203011787 -24512791 + L2 LINE L2 2078 2851 -463 736 232 27 36 chr3 203012038 203012262 -24512316 - L1MEc LINE L1 -4370 2026 1805 2986 133 24 13 chr3 203012265 203012716 -24511862 - MSTB2 LTR MaLR -1 456 1 1230 273 12 9 chr3 203012741 203013060 -24511518 - L1MEc LINE L1 -5753 643 324 2719 150 76 16 chr3 203013070 203013584 -24510994 - LTR10A LTR ERV1 -64 545 1 269 143 41 0 chr3 203013606 203013655 -24510923 - LTR10B LTR ERV1 -496 51 1 944 244 89 19 chr3 203013659 203013825 -24510753 - L1MEc LINE L1 -6090 306 114 192 77 0 0 chr3 203013825 203013851 -24510727 + (TTTTG)n Simple_repeat Simple_repeat 2 27 0 944 244 89 19 chr3 203013851 203013942 -24510636 - L1MEc LINE L1 -6282 114 31 748 179 112 22 chr3 203015010 203015233 -24509345 - MER113 DNA MER1_type? -72 449 207 902 86 0 0 chr3 203015238 203015354 -24509224 - AluSg/x SINE Alu -12 300 185 1502 127 0 26 chr3 203015354 203015582 -24508996 - AluSx SINE Alu -90 222 1 25 83 0 0 chr3 203015656 203015716 -24508862 + AT_rich Low_complexity Low_complexity 1 60 0 376 271 99 72 chr3 203015772 203016188 -24508390 - LTR16A LTR ERVL -10 440 1 221 158 70 88 chr3 203016220 203016277 -24508301 + MIR3 SINE MIR 111 166 -42 2355 88 0 3 chr3 203016374 203016671 -24507907 + AluSc SINE Alu 2 297 -12 2227 106 0 0 chr3 203017396 203017718 -24506860 + AluSx SINE Alu 1 322 0 573 146 24 8 chr3 203019084 203019207 -24505371 + CT-rich Low_complexity Low_complexity 4 128 0 296 341 63 0 chr3 203019745 203019871 -24504707 + MIR SINE MIR 7 140 -122 22 35 0 0 chr3 203020259 203020288 -24504290 + AT_rich Low_complexity Low_complexity 1 29 0 257 208 0 0 chr3 203020289 203020337 -24504241 - L1MA8 LINE L1 -216 6075 6028 495 48 0 0 chr3 203020341 203020403 -24504175 + (TTCC)n Simple_repeat Simple_repeat 4 65 0 282 116 0 0 chr3 203020393 203020436 -24504142 + (TC)n Simple_repeat Simple_repeat 1 43 0 * 817 148 0 8 chr3 203020436 203020449 -24504129 - AluSg/x SINE Alu -1 311 299 369 113 0 0 chr3 203020449 203020502 -24504076 - L1PA3 LINE L1 0 6155 6103 817 148 0 8 chr3 203020502 203020616 -24503962 - AluSg/x SINE Alu -13 299 185 1189 144 6 6 chr3 203020616 203020797 -24503781 - AluSx SINE Alu -90 222 42 574 259 63 27 chr3 203021871 203022063 -24502515 - MIR SINE MIR -63 145 1 263 307 133 24 chr3 203022767 203022933 -24501645 + MIR SINE MIR 79 262 0 284 306 59 41 chr3 203023674 203023844 -24500734 + MIR3 SINE MIR 29 201 -7 2257 106 0 0 chr3 203024489 203024791 -24499787 + AluSc SINE Alu 1 302 -7 414 256 29 51 chr3 203025042 203025179 -24499399 + MIR SINE MIR 1 134 -128 717 241 86 102 chr3 203025991 203026548 -24498030 + L1ME4a LINE L1 5574 6121 0 486 275 8 8 chr3 203026587 203026707 -24497871 - MIR3 SINE MIR -41 167 48 2157 107 10 3 chr3 203026771 203027062 -24497516 + AluSq SINE Alu 1 293 -20 940 199 0 6 chr3 203027796 203027967 -24496611 + AluJb SINE Alu 121 290 -22 691 289 32 45 chr3 203027973 203028219 -24496359 + MIR SINE MIR 20 262 0 238 239 57 34 chr3 203028469 203028557 -24496021 - MIR3 SINE MIR -29 179 90 619 208 0 0 chr3 203030559 203030655 -24493923 + AluJb SINE Alu 133 228 -84 470 154 0 66 chr3 203030898 203030989 -24493589 - AluJ/FRAM SINE Alu -3 309 225 287 261 38 130 chr3 203031653 203031837 -24492741 - MIR3 SINE MIR -5 203 37 1393 77 11 0 chr3 203032775 203032956 -24491622 + AluY SINE Alu 103 285 -26 1939 135 21 0 chr3 203033024 203033313 -24491265 - MER1B DNA MER1_type 0 339 45 341 247 31 21 chr3 203034967 203035064 -24489514 + MIR SINE MIR 102 199 -63 453 263 31 19 chr3 203035834 203035994 -24488584 - L1MEd LINE L1 -5063 1056 895 * 684 224 63 109 chr3 203035993 203036244 -24488334 - L1MDa LINE L1 -4109 2431 2217 1951 136 3 3 chr3 203036244 203036538 -24488040 - AluSx SINE Alu -18 294 1 684 224 63 109 chr3 203036538 203036827 -24487751 - L1MDa LINE L1 -4323 2217 1916 1577 204 54 93 chr3 203037410 203037950 -24486628 + LTR40a LTR ERVL 1 519 0 2296 108 0 0 chr3 203038497 203038794 -24485784 + AluSg SINE Alu 1 297 -13 1571 256 109 45 chr3 203039078 203039637 -24484941 - MLT1G1 LTR MaLR 0 595 1 252 333 20 0 chr3 203039654 203039753 -24484825 - MIR SINE MIR -79 183 83 1856 150 10 7 chr3 203039866 203040166 -24484412 - AluJb SINE Alu -11 301 1 284 314 100 21 chr3 203040288 203040428 -24484150 + MIR SINE MIR 4 154 -108 2096 111 4 0 chr3 203041179 203041507 -24483071 + AluSx SINE Alu 1 329 0 1316 235 63 39 chr3 203043783 203043917 -24480661 - L1MA10 LINE L1 -2 6332 6203 2703 91 98 20 chr3 203043917 203044314 -24480264 + MSTC LTR MaLR 1 428 0 1316 235 63 39 chr3 203044314 203044591 -24479987 - L1MA10 LINE L1 -131 6203 5911 885 241 102 83 chr3 203044644 203044983 -24479595 + MLT1F1 LTR MaLR 1 323 -182 505 288 0 0 chr3 203044983 203045094 -24479484 - MER81 DNA DNA 0 114 4 885 241 102 83 chr3 203045094 203045279 -24479299 + MLT1F1 LTR MaLR 323 503 -2 613 179 130 76 chr3 203046629 203046714 -24477864 - MER3 DNA MER1_type 0 209 130 2148 88 7 14 chr3 203046714 203047008 -24477570 + AluSq SINE Alu 1 292 -21 613 179 130 76 chr3 203047008 203047042 -24477536 - MER3 DNA MER1_type -79 130 99 15948 117 38 14 chr3 203047042 203049404 -24475174 + Tigger1 DNA MER2_type 1 2418 0 613 179 130 76 chr3 203049404 203049467 -24475111 - MER3 DNA MER1_type -110 99 16 294 264 54 16 chr3 203050231 203050360 -24474218 - MIR3 SINE MIR -7 201 68 304 256 116 16 chr3 203051945 203052074 -24472504 - MIR SINE MIR -61 201 60 2123 76 22 7 chr3 203052453 203052728 -24471850 - AluSc SINE Alu -7 302 24 216 371 48 9 chr3 203052870 203052975 -24471603 - L2 LINE L2 -8 3264 3156 992 82 0 0 chr3 203053007 203053129 -24471449 - AluSc SINE Alu -187 122 1 186 274 86 71 chr3 203053147 203053344 -24471234 - L2 LINE L2 -217 3055 2856 185 310 28 0 chr3 203053464 203053535 -24471043 - L2 LINE L2 -557 2757 2685 225 65 0 0 chr3 203054191 203054222 -24470356 + (TTG)n Simple_repeat Simple_repeat 3 33 0 1813 125 71 14 chr3 203054524 203054819 -24469759 - AluSx SINE Alu 0 312 1 2316 108 0 0 chr3 203055962 203056269 -24468309 + AluSx SINE Alu 6 312 0 302 234 22 147 chr3 203056360 203056544 -24468034 - MER5B DNA MER1_type 0 178 18 503 204 184 13 chr3 203056634 203056786 -24467792 - MER5B DNA MER1_type 0 178 1 231 61 0 0 chr3 203056901 203056934 -24467644 + (A)n Simple_repeat Simple_repeat 1 33 0 349 344 43 18 chr3 203057286 203057449 -24467129 + MIR SINE MIR 22 188 -74 2369 97 3 0 chr3 203057574 203057873 -24466705 + AluSx SINE Alu 1 300 -12 411 239 115 14 chr3 203058467 203058606 -24465972 - MIR SINE MIR -69 139 23 253 165 76 0 chr3 203059674 203059753 -24464825 + (TTATA)n Simple_repeat Simple_repeat 5 89 0 308 272 141 52 chr3 203059829 203060020 -24464558 + MIR SINE MIR 15 222 -40 831 296 164 19 chr3 203060692 203061419 -24463159 - L1ME4a LINE L1 0 6121 5290 2131 127 0 0 chr3 203062087 203062386 -24462192 + AluSx SINE Alu 1 299 -13 250 328 56 64 chr3 203062403 203062528 -24462050 + L2 LINE L2 3129 3252 -20 285 289 94 8 chr3 203062588 203062716 -24461862 + MIR SINE MIR 25 163 -99 2370 85 0 16 chr3 203063710 203064026 -24460552 + AluY SINE Alu 1 311 0 4179 123 33 111 chr3 203064143 203064994 -24459584 - LTR1 LTR ERV1 0 785 1 2028 149 149 11 chr3 203065338 203065714 -24458864 + MSTA LTR MaLR 1 428 0 1186 113 12 12 chr3 203066579 203066747 -24457831 + AluSg/x SINE Alu 124 291 -21 2072 104 24 3 chr3 203066753 203067042 -24457536 + AluSc SINE Alu 1 295 -14 248 285 188 21 chr3 203067200 203067344 -24457234 + MIR3 SINE MIR 20 187 -21 305 265 10 10 chr3 203068740 203068838 -24455740 + (CATATA)n Simple_repeat Simple_repeat 1 98 0 287 261 38 130 chr3 203070964 203071148 -24453430 - MIR3 SINE MIR -5 203 37 1054 279 127 14 chr3 203071663 203072232 -24452346 + L1ME4a LINE L1 5453 6090 -31 360 329 51 22 chr3 203072370 203072507 -24452071 - L2 LINE L2 -67 3205 3065 198 0 0 0 chr3 203073018 203073040 -24451538 + (A)n Simple_repeat Simple_repeat 1 22 0 21 0 0 0 chr3 203074233 203074254 -24450324 + AT_rich Low_complexity Low_complexity 1 21 0 1236 217 179 12 chr3 203075466 203075802 -24448776 - MSTD LTR MaLR 0 396 5 6614 234 94 27 chr3 203075804 203077429 -24447149 - MSTD-int LTR MaLR 0 1735 2 1519 251 84 5 chr3 203077431 203077798 -24446780 - MSTD LTR MaLR 0 396 1 321 328 29 35 chr3 203077907 203078081 -24446497 + MIR SINE MIR 20 192 -70 1243 253 92 67 chr3 203078139 203078574 -24446004 - MLT1J LTR MaLR -6 505 60 1664 184 35 69 chr3 203078615 203078991 -24445587 + MLT1A1 LTR MaLR 3 365 0 304 254 0 0 chr3 203079366 203079429 -24445149 - MER94 DNA DNA 0 134 72 26 30 0 0 chr3 203080106 203080139 -24444439 + AT_rich Low_complexity Low_complexity 1 33 0 1855 164 3 16 chr3 203080229 203080540 -24444038 - AluJo SINE Alu -5 307 1 479 260 71 30 chr3 203080923 203081092 -24443486 + 7SK RNA RNA 1 176 -17 2325 110 0 0 chr3 203081632 203081940 -24442638 + AluSq SINE Alu 1 308 -5 1657 240 102 7 chr3 203082051 203082601 -24441977 - MER114 LTR ERV 0 648 47 1810 125 68 24 chr3 203082668 203082963 -24441615 + AluY SINE Alu 1 308 -3 387 0 0 0 chr3 203082966 203083009 -24441569 + (TA)n Simple_repeat Simple_repeat 1 43 0 1084 174 0 0 chr3 203083145 203083341 -24441237 + L1P LINE L1 4387 4582 -1564 1467 90 5 10 chr3 203083341 203083542 -24441036 - AluSp SINE Alu -102 211 12 2047 144 0 10 chr3 203085449 203085805 -24438773 + AluSq SINE Alu 1 353 0 395 219 25 18 chr3 203085809 203085950 -24438628 + MIR3 SINE MIR 15 154 -65 356 301 53 0 chr3 203086877 203086990 -24437588 + MIR3 SINE MIR 42 160 -48 293 234 51 119 chr3 203087059 203087294 -24437284 + MER102a DNA MER1_type 112 330 0 337 308 0 9 chr3 203088634 203088741 -24435837 - MIR SINE MIR -22 240 135 242 210 0 0 chr3 203088741 203088803 -24435775 + T-rich Low_complexity Low_complexity 1 62 0 194 111 167 0 chr3 203088803 203088839 -24435739 - MIR SINE MIR -122 140 99 440 257 162 11 chr3 203090247 203090426 -24434152 - MIR SINE MIR -1 261 56 1137 256 111 12 chr3 203090919 203091333 -24433245 + LTR16A1 LTR ERVL 3 457 0 2168 23 8 12 chr3 203092072 203092331 -24432247 + AluY SINE Alu 44 301 -10 381 207 60 35 chr3 203092643 203092759 -24431819 + MIR3 SINE MIR 85 203 -5 733 268 55 4 chr3 203092769 203093004 -24431574 + MIR SINE MIR 6 252 -10 530 234 19 26 chr3 203093146 203093300 -24431278 - MIR SINE MIR -29 233 81 664 196 45 96 chr3 203093312 203093410 -24431168 + MER63A DNA MER1_type 17 102 -1586 1826 173 0 19 chr3 203093410 203093728 -24430850 - AluJo SINE Alu 0 312 1 664 196 45 96 chr3 203093728 203093828 -24430750 + MER63A DNA MER1_type 102 205 -5 2396 84 0 0 chr3 203093849 203094148 -24430430 + AluY SINE Alu 1 299 -12 3380 67 20 31 chr3 203094266 203094715 -24429863 - MLT2A1 LTR ERVL 0 444 1 494 299 92 10 chr3 203096215 203096422 -24428156 - MIR SINE MIR -2 260 37 689 317 49 20 chr3 203097241 203097487 -24427091 - MIR SINE MIR -9 253 1 231 396 11 0 chr3 203097637 203097728 -24426850 - L2 LINE L2 -177 3095 3004 198 260 60 40 chr3 203098095 203098195 -24426383 - L2 LINE L2 -670 2644 2543 4419 152 11 4 chr3 203098760 203099462 -24425116 - MER50 LTR ERV1 -25 709 3 242 225 78 70 chr3 203099828 203099957 -24424621 + L1ME4a LINE L1 5990 6119 -2 217 191 0 63 chr3 203102773 203102836 -24421742 + T-rich Low_complexity Low_complexity 2 60 0 1939 135 21 0 chr3 203105263 203105552 -24419026 + MER1B DNA MER1_type 45 339 0 2289 71 4 0 chr3 203105611 203105892 -24418686 - AluY SINE Alu -17 294 13 4546 215 53 5 chr3 203106041 203107003 -24417575 - MSTA-int LTR MaLR -642 1009 2 559 176 20 0 chr3 203107004 203107106 -24417472 - MSTA LTR MaLR 0 428 325 1507 110 0 0 chr3 203107234 203107434 -24417144 + AluSg/x SINE Alu 97 296 -16 2115 128 0 14 chr3 203107594 203107890 -24416688 - AluSx SINE Alu -17 295 4 344 192 20 131 chr3 203107953 203107992 -24416586 - MER58C DNA MER1_type -2206 214 172 1653 156 87 4 chr3 203107992 203108268 -24416310 + AluSg SINE Alu 1 299 -11 344 192 20 131 chr3 203108268 203108327 -24416251 - MER58C DNA MER1_type -2248 172 127 314 299 86 46 chr3 203108435 203108609 -24415969 - MLT1J2 LTR MaLR -8 442 262 798 232 37 11 chr3 203108636 203108826 -24415752 - MLT1J2 LTR MaLR -247 203 9 790 204 8 0 chr3 203109359 203109491 -24415087 - FLAM_A SINE Alu 0 133 1 251 290 0 0 chr3 203109902 203109964 -24414614 + MER69 DNA AcHobo 2460 2521 -5 436 264 78 8 chr3 203110295 203110424 -24414154 + MIR3 SINE MIR 19 156 -52 187 174 109 22 chr3 203110456 203110502 -24414076 + L2 LINE L2 3194 3243 -70 2040 105 0 0 chr3 203110746 203111013 -24413565 - AluSx SINE Alu -13 299 33 22 35 0 0 chr3 203111217 203111246 -24413332 + AT_rich Low_complexity Low_complexity 1 29 0 227 195 0 0 chr3 203111259 203111300 -24413278 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 282 246 16 0 chr3 203111877 203111938 -24412640 - MER5A DNA MER1_type 0 189 128 770 310 103 20 chr3 203113016 203113406 -24411172 - L3 LINE CR1 -1 1576 1155 426 204 46 99 chr3 203113501 203113653 -24410925 + MER103 DNA DNA 4 147 -19 515 320 25 29 chr3 203113698 203113942 -24410636 + MIR SINE MIR 20 262 0 184 254 36 0 chr3 203114434 203114489 -24410089 + MIR SINE MIR 160 216 -46 330 264 202 16 chr3 203114655 203114784 -24409794 + MIR3 SINE MIR 54 206 -2 339 25 0 0 chr3 203115010 203115050 -24409528 + (TG)n Simple_repeat Simple_repeat 2 41 0 1013 150 27 16 chr3 203115143 203115330 -24409248 - MER53 DNA DNA 0 189 1 434 320 116 18 chr3 203115582 203115807 -24408771 + MIR SINE MIR 1 247 -15 2284 106 3 0 chr3 203115952 203116264 -24408314 + AluSp SINE Alu 1 313 0 1844 187 27 50 chr3 203117742 203118180 -24406398 + MSTC LTR MaLR 1 428 0 389 302 154 39 chr3 203118321 203118979 -24405599 + L2 LINE L2 2278 3006 -266 1525 186 52 109 chr3 203119147 203119642 -24404936 + MLT1C LTR MaLR 1 467 0 2103 100 3 24 chr3 203120377 203120714 -24403864 + AluSx SINE Alu 1 331 0 1811 139 18 18 chr3 203122336 203122617 -24401961 - MER1B DNA MER1_type -2 337 57 391 347 53 16 chr3 203123063 203123308 -24401270 - L2 LINE L2 -737 2577 2324 2583 62 7 0 chr3 203123703 203124012 -24400566 + AluY SINE Alu 1 311 0 2027 127 37 0 chr3 203124941 203125241 -24399337 + AluSx SINE Alu 1 311 -1 230 245 11 32 chr3 203126002 203126096 -24398482 + (TA)n Simple_repeat Simple_repeat 2 93 0 21 0 0 0 chr3 203126504 203126525 -24398053 + AT_rich Low_complexity Low_complexity 1 21 0 2356 69 0 10 chr3 203127589 203127878 -24396700 + AluY SINE Alu 22 307 -4 449 110 14 0 chr3 203127881 203127954 -24396624 + (GGAA)n Simple_repeat Simple_repeat 3 76 0 240 232 123 84 chr3 203128450 203128573 -24396005 - MER112 DNA MER1_type -36 224 92 2268 91 0 13 chr3 203128573 203128871 -24395707 + AluY SINE Alu 1 294 -17 240 232 123 84 chr3 203128871 203128902 -24395676 - MER112 DNA MER1_type -168 92 64 28 0 0 0 chr3 203130680 203130708 -24393870 + AT_rich Low_complexity Low_complexity 1 28 0 306 319 137 5 chr3 203131279 203131483 -24393095 - MIR SINE MIR -11 251 21 195 286 71 82 chr3 203132786 203132884 -24391694 - MIR SINE MIR -165 97 1 560 235 29 41 chr3 203134822 203134992 -24389586 + MIR3 SINE MIR 38 205 -3 528 168 75 0 chr3 203135118 203135225 -24389353 + L1MC1 LINE L1 6044 6158 -175 1453 142 47 9 chr3 203135235 203135468 -24389110 - AluSg/x SINE Alu 0 310 69 2228 97 3 58 chr3 203135484 203135814 -24388764 - AluSx SINE Alu 0 312 1 25 0 0 0 chr3 203135917 203135942 -24388636 + AT_rich Low_complexity Low_complexity 1 25 0 233 283 0 0 chr3 203136122 203136175 -24388403 - L2 LINE L2 -71 3201 3149 526 341 23 0 chr3 203136206 203136423 -24388155 - MIR SINE MIR -12 250 29 26 30 0 0 chr3 203136453 203136486 -24388092 + AT_rich Low_complexity Low_complexity 1 33 0 1974 127 0 3 chr3 203136492 203136808 -24387770 + AluSx SINE Alu 1 315 0 2335 112 0 0 chr3 203137822 203138118 -24386460 - AluSc SINE Alu -13 296 1 469 135 0 14 chr3 203138725 203138799 -24385779 - Tigger5 DNA MER2_type 0 2323 2251 283 143 18 36 chr3 203138767 203138823 -24385755 - Tigger5 DNA MER2_type -2268 55 1 * 2157 135 3 0 chr3 203138880 203139184 -24385394 + AluSx SINE Alu 1 305 -7 216 0 0 0 chr3 203140493 203140517 -24384061 + (A)n Simple_repeat Simple_repeat 1 24 0 306 240 30 10 chr3 203140635 203140735 -24383843 + L1ME4a LINE L1 5978 6079 -42 212 146 24 0 chr3 203141750 203141791 -24382787 + L2 LINE L2 3272 3313 0 1846 79 4 0 chr3 203142891 203143120 -24381458 + AluY SINE Alu 37 266 -45 2329 79 10 3 chr3 203143134 203143425 -24381153 + AluSx SINE Alu 1 293 -19 1579 224 95 29 chr3 203144384 203144924 -24379654 + MLT1F1 LTR MaLR 1 567 0 2189 71 4 0 chr3 203146236 203146502 -24378076 + AluSp SINE Alu 39 305 -8 1477 178 56 4 chr3 203147613 203147883 -24376695 + MER58 DNA MER1_type 1 284 -57 186 286 0 0 chr3 203148786 203148842 -24375736 - L2 LINE L2 -5 3267 3212 185 317 104 30 chr3 203149108 203149272 -24375306 + MER5A DNA MER1_type 7 182 -7 534 167 20 0 chr3 203149325 203149427 -24375151 + MER5B DNA MER1_type 73 176 -2 187 347 81 16 chr3 203149883 203150007 -24374571 - L2 LINE L2 -213 3059 2928 416 278 96 9 chr3 203150127 203150294 -24374284 - MER5B DNA MER1_type -1 177 9 2509 46 0 0 chr3 203152024 203152344 -24372234 + AluY SINE Alu 1 320 0 460 233 16 69 chr3 203152528 203152717 -24371861 + L1ME LINE L1 5485 5663 -458 545 320 45 20 chr3 203152725 203152969 -24371609 + MIR SINE MIR 2 251 -11 2474 229 97 19 chr3 203153494 203154214 -24370364 + L1MC4a LINE L1 7033 7808 0 2276 111 3 0 chr3 203154678 203154975 -24369603 + AluSq SINE Alu 1 298 -15 296 309 73 0 chr3 203155139 203155275 -24369303 - MIR SINE MIR -56 206 61 350 238 29 0 chr3 203155875 203155980 -24368598 - MLT1L LTR MaLR -2 613 506 405 0 0 0 chr3 203156067 203156112 -24368466 + (TG)n Simple_repeat Simple_repeat 2 46 0 1734 189 46 3 chr3 203157768 203158091 -24366487 + Tigger3(Golem) DNA MER2_type 1 337 -2692 186 43 0 0 chr3 203158144 203158167 -24366411 + (CCCCCT)n Simple_repeat Simple_repeat 4 26 0 10661 50 4 83 chr3 203158167 203159666 -24364912 + SVA Other Other 1 1380 -6 2410 100 3 0 chr3 203160004 203160305 -24364273 - AluSx SINE Alu -10 302 1 273 383 0 42 chr3 203160305 203160425 -24364153 - MIR SINE MIR -57 151 37 21 57 0 0 chr3 203161320 203161355 -24363223 + AT_rich Low_complexity Low_complexity 1 35 0 846 128 64 98 chr3 203161539 203161691 -24362887 + MER96B DNA MER1_type? 1 144 -273 2450 67 3 7 chr3 203161691 203161990 -24362588 - AluY SINE Alu -13 298 1 846 128 64 98 chr3 203161990 203162071 -24362507 + MER96B DNA MER1_type? 144 226 -191 348 261 232 47 chr3 203162639 203162688 -24361890 - MIR SINE MIR -11 251 212 834 107 57 0 chr3 203162688 203162810 -24361768 + FLAM_C SINE Alu 2 130 -3 348 261 232 47 chr3 203162810 203162971 -24361607 - MIR SINE MIR -50 212 2 282 183 98 12 chr3 203167422 203167504 -24357074 + MIR SINE MIR 63 151 -111 198 0 0 0 chr3 203167658 203167680 -24356898 + (TAA)n Simple_repeat Simple_repeat 3 24 0 189 211 0 0 chr3 203168800 203168852 -24355726 + A-rich Low_complexity Low_complexity 1 52 0 202 237 26 53 chr3 203169039 203169115 -24355463 + L2 LINE L2 2334 2407 -907 2537 64 3 10 chr3 203169123 203169435 -24355143 - AluY SINE Alu -1 310 1 2646 149 8 38 chr3 203169848 203170256 -24354322 + MER31A LTR ERV1 1 393 -92 2415 81 3 0 chr3 203170256 203170563 -24354015 - AluSp SINE Alu -5 308 1 2646 149 8 38 chr3 203170563 203170652 -24353926 + MER31A LTR ERV1 393 483 -2 378 0 0 0 chr3 203170919 203170961 -24353617 + (CA)n Simple_repeat Simple_repeat 2 43 0 349 244 76 25 chr3 203173787 203173906 -24350672 + MIR SINE MIR 111 235 -27 687 65 0 0 chr3 203174631 203174724 -24349854 + (TAGA)n Simple_repeat Simple_repeat 3 95 0 359 351 33 13 chr3 203175208 203175359 -24349219 + L2 LINE L2 3114 3267 -5 230 152 0 43 chr3 203175434 203175480 -24349098 + MER5B DNA MER1_type 22 65 -113 193 218 91 18 chr3 203175438 203175493 -24349085 - MER5A DNA MER1_type -25 164 106 * 2127 230 110 70 chr3 203175904 203176369 -24348209 + L1MEc LINE L1 45 490 -5906 1333 173 14 0 chr3 203176369 203176589 -24347989 + MER58A DNA MER1_type 1 223 -1 2127 230 110 70 chr3 203176589 203177052 -24347526 + L1MEc LINE L1 490 1010 -5386 5394 70 1 8 chr3 203177056 203177774 -24346804 + L1PA8A LINE L1 5419 6131 0 7503 140 12 8 chr3 203177884 203178026 -24346552 - HSMAR2 DNA Mariner -1 1301 1161 2446 72 0 3 chr3 203178026 203178331 -24346247 + AluY SINE Alu 1 304 -7 7503 140 12 8 chr3 203178331 203179476 -24345102 - HSMAR2 DNA Mariner -141 1161 8 1655 114 30 4 chr3 203179471 203179733 -24344845 - HSMAR2 DNA Mariner -338 964 696 * 300 297 47 7 chr3 203179777 203179925 -24344653 + L1MEc LINE L1 1936 2089 -4307 467 250 80 74 chr3 203179948 203180228 -24344350 - L1MCc LINE L1 -4889 1534 1286 2243 127 0 0 chr3 203180228 203180536 -24344042 + AluSg SINE Alu 1 308 -2 467 250 80 74 chr3 203180536 203180693 -24343885 - L1MCc LINE L1 -5137 1286 1132 2133 137 0 23 chr3 203181270 203181577 -24343001 + AluJo SINE Alu 1 300 -12 32 0 0 0 chr3 203181639 203181671 -24342907 + AT_rich Low_complexity Low_complexity 1 32 0 182 128 26 0 chr3 203181983 203182022 -24342556 + (CA)n Simple_repeat Simple_repeat 1 40 0 227 350 126 0 chr3 203182032 203182135 -24342443 - MIR3 SINE MIR -78 130 15 723 272 51 10 chr3 203182992 203183187 -24341391 - MIR SINE MIR -48 214 12 243 238 138 25 chr3 203184766 203184846 -24339732 + MIR SINE MIR 32 120 -88 245 259 17 0 chr3 203184970 203185028 -24339550 - L2 LINE L2 -4 3268 3210 1790 149 3 3 chr3 203185054 203185362 -24339216 + AluJb SINE Alu 1 308 0 2375 89 0 34 chr3 203185598 203185922 -24338656 + AluSq SINE Alu 1 313 0 406 271 139 0 chr3 203185956 203186078 -24338500 + MIR3 SINE MIR 27 165 -43 720 130 188 143 chr3 203186144 203186452 -24338126 + MER33 DNA MER1_type 3 324 0 554 308 43 24 chr3 203187001 203187212 -24337366 - MIR SINE MIR -43 219 5 2319 112 0 0 chr3 203188604 203188907 -24335671 + AluSx SINE Alu 1 303 -9 506 295 133 37 chr3 203189099 203189425 -24335153 - L2 LINE L2 0 3313 3020 2557 30 3 0 chr3 203189425 203189720 -24334858 + AluY SINE Alu 1 296 -15 506 295 133 37 chr3 203189720 203190134 -24334444 - L2 LINE L2 -293 3020 2449 213 211 0 0 chr3 203190434 203190486 -24334092 + (TTG)n Simple_repeat Simple_repeat 2 53 0 397 282 112 21 chr3 203191600 203191788 -24332790 + MIR SINE MIR 48 252 -10 1628 112 0 5 chr3 203192729 203193008 -24331570 + AluSq SINE Alu 63 340 0 328 261 72 9 chr3 203193210 203193321 -24331257 - MER5A DNA MER1_type -65 124 7 27 29 0 0 chr3 203195762 203195796 -24328782 + AT_rich Low_complexity Low_complexity 1 34 0 1852 227 62 52 chr3 203195836 203196351 -24328227 + MLT2B1 LTR ERVL 1 520 0 319 295 26 0 chr3 203196586 203196664 -24327914 - L2 LINE L2 0 3313 3234 289 346 113 39 chr3 203196764 203197171 -24327407 - L2 LINE L2 -420 2894 2458 188 318 73 45 chr3 203197175 203197285 -24327293 + MIR SINE MIR 100 212 -50 8709 108 5 12 chr3 203198684 203199975 -24324603 + HSMAR1 DNA Mariner 6 1287 0 2089 125 0 10 chr3 203200008 203200311 -24324267 - AluY SINE Alu -11 300 1 1060 109 23 11 chr3 203200315 203200489 -24324089 - L1MA2 LINE L1 0 6304 6129 5465 78 20 9 chr3 203200504 203201300 -24323278 - L1MA1 LINE L1 -125 6177 5373 4703 168 7 19 chr3 203201353 203202688 -24321890 + L1PA16 LINE L1 4773 6098 -68 198 171 0 0 chr3 203202723 203202758 -24321820 + MIR3 SINE MIR 171 205 -3 438 20 0 0 chr3 203203884 203203935 -24320643 + (CA)n Simple_repeat Simple_repeat 2 52 0 6386 156 46 10 chr3 203204667 203205854 -24318724 + Tigger3b DNA MER2_type 1 1230 -1 730 189 15 92 chr3 203206036 203206242 -24318336 + MER58A DNA MER1_type 35 224 0 338 280 86 40 chr3 203206250 203206425 -24318153 + MER5A DNA MER1_type 1 183 -6 844 229 12 0 chr3 203206931 203207097 -24317481 - MER5A DNA MER1_type -5 184 17 277 323 39 71 chr3 203207279 203207434 -24317144 - MIR3 SINE MIR -1 207 58 222 118 0 0 chr3 203208131 203208165 -24316413 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 558 0 0 0 chr3 203211352 203211414 -24313164 + (CA)n Simple_repeat Simple_repeat 1 62 0 698 299 9 23 chr3 203212007 203212224 -24312354 + MIR SINE MIR 41 254 -8 366 284 177 7 chr3 203213422 203213563 -24311015 + MIR SINE MIR 2 166 -96 462 291 87 0 chr3 203216421 203216627 -24307951 - MLT1J2 LTR MaLR -11 439 216 257 212 35 24 chr3 203216828 203216913 -24307665 + GA-rich Low_complexity Low_complexity 3 88 0 447 326 68 0 chr3 203217631 203217763 -24306815 + L2 LINE L2 3132 3272 0 26 0 0 0 chr3 203218020 203218046 -24306532 + AT_rich Low_complexity Low_complexity 1 26 0 255 203 0 0 chr3 203219157 203219216 -24305362 + (TA)n Simple_repeat Simple_repeat 2 60 0 306 73 0 0 chr3 203220547 203220588 -24303990 + (TG)n Simple_repeat Simple_repeat 1 41 0 262 213 12 12 chr3 203220620 203220700 -24303878 + (TATATG)n Simple_repeat Simple_repeat 2 81 0 509 333 12 12 chr3 203220811 203220982 -24303596 + MIR SINE MIR 6 176 -86 249 250 93 21 chr3 203222660 203222800 -24301778 + L1ME4a LINE L1 5968 6117 -4 207 364 87 20 chr3 203222893 203223088 -24301490 - MIR SINE MIR -50 212 5 2197 122 3 0 chr3 203223204 203223507 -24301071 + AluSx SINE Alu 1 304 -8 654 293 61 0 chr3 203224068 203224249 -24300329 - MER91A DNA MER1_type -4 192 1 231 229 145 12 chr3 203224444 203224527 -24300051 + MIR SINE MIR 163 256 -6 1467 157 0 24 chr3 203226540 203226788 -24297790 - AluJo SINE Alu -70 242 1 352 250 62 18 chr3 203227229 203227341 -24297237 + L2 LINE L2 3187 3303 -10 240 35 0 0 chr3 203227341 203227370 -24297208 + (TGAA)n Simple_repeat Simple_repeat 3 31 0 3675 51 2 11 chr3 203227442 203227894 -24296684 + LTR7 LTR ERV1 1 448 -2 1512 103 9 0 chr3 203227896 203228119 -24296459 + HERVH LTR ERV1 1 225 -7488 * 16124 89 10 7 chr3 203228100 203230395 -24294183 + HERVH LTR ERV1 437 2987 -4726 875 155 20 0 chr3 203230389 203230537 -24294041 + HERVH LTR ERV1 3140 3290 -4423 * 3390 115 4 6 chr3 203230527 203231030 -24293548 + HERVH LTR ERV1 3492 3993 -3720 4498 139 0 1 chr3 203231032 203231695 -24292883 + HERVH LTR ERV1 4488 5149 -2564 2573 107 30 39 chr3 203231696 203232292 -24292286 + HERVH LTR ERV1 5600 7713 0 3465 66 9 18 chr3 203232292 203232744 -24291834 + LTR7 LTR ERV1 1 448 -2 236 282 14 56 chr3 203232939 203233010 -24291568 - L2 LINE L2 -188 3084 3017 205 191 0 0 chr3 203233114 203233156 -24291422 + A-rich Low_complexity Low_complexity 1 42 0 42480 39 32 2 chr3 203233259 203239212 -24285366 + L1PA4 LINE L1 12 6152 -3 210 245 102 0 chr3 203241569 203241618 -24282960 + L2 LINE L2 3168 3221 -51 414 307 9 0 chr3 203241818 203241932 -24282646 - MIR3 SINE MIR -51 157 43 552 126 30 30 chr3 203243537 203243672 -24280906 + GA-rich Low_complexity Low_complexity 1 135 0 233 333 0 0 chr3 203243706 203243775 -24280803 + MLT1F1 LTR MaLR 46 114 -453 2686 150 109 25 chr3 203243775 203244336 -24280242 + L1MC3 LINE L1 7178 7785 0 3075 89 2 21 chr3 203244418 203244847 -24279731 - L1PA13 LINE L1 -438 5723 5303 2802 144 11 2 chr3 203244866 203245302 -24279276 + L1PA13 LINE L1 5724 6163 0 357 261 108 0 chr3 203247067 203247197 -24277381 - MIR SINE MIR 0 262 119 673 219 24 37 chr3 203247328 203247492 -24277086 - MIR SINE MIR -30 232 71 638 282 199 33 chr3 203247643 203247980 -24276598 - L2 LINE L2 0 3313 2921 230 319 132 0 chr3 203249701 203249792 -24274786 - L2 LINE L2 -2 3270 3168 598 342 107 35 chr3 203251478 203252248 -24272330 - L3 LINE CR1 -359 1218 394 408 272 80 31 chr3 203252476 203252638 -24271940 - L2 LINE L2 -454 2860 2691 299 263 26 0 chr3 203252655 203252731 -24271847 + L3 LINE CR1 1499 1576 -1 231 88 0 0 chr3 203252830 203252864 -24271714 + (TG)n Simple_repeat Simple_repeat 1 34 0 219 69 0 0 chr3 203252925 203252954 -24271624 + (TG)n Simple_repeat Simple_repeat 2 30 0 219 69 0 0 chr3 203253020 203253049 -24271529 + (TG)n Simple_repeat Simple_repeat 2 30 0 219 69 0 0 chr3 203253115 203253144 -24271434 + (TG)n Simple_repeat Simple_repeat 2 30 0 339 85 0 0 chr3 203253210 203253257 -24271321 + (TG)n Simple_repeat Simple_repeat 2 48 0 216 97 0 0 chr3 203253322 203253353 -24271225 + (TG)n Simple_repeat Simple_repeat 2 32 0 1711 208 32 30 chr3 203253662 203254129 -24270449 + LTR37B LTR ERV1 1 468 0 212 276 0 0 chr3 203254229 203254287 -24270291 + T-rich Low_complexity Low_complexity 1 58 0 * 227 98 0 59 chr3 203254245 203254296 -24270282 + (TTTG)n Simple_repeat Simple_repeat 1 48 0 2400 80 0 16 chr3 203255086 203255399 -24269179 - AluSc SINE Alu -1 308 1 997 138 94 0 chr3 203257375 203257556 -24267022 + L1PB1 LINE L1 3 200 -6663 * 15355 176 62 13 chr3 203257548 203259988 -24264590 + L1PB1 LINE L1 625 2943 -3924 1469 130 14 0 chr3 203259988 203260195 -24264383 + AluSg/x SINE Alu 83 292 -18 15355 176 62 13 chr3 203260195 203263341 -24261237 + L1PB1 LINE L1 2943 6539 -328 771 11 0 0 chr3 203263341 203263429 -24261149 + (CATATA)n Simple_repeat Simple_repeat 1 88 0 15355 176 62 13 chr3 203263429 203263775 -24260803 + L1PB1 LINE L1 6539 6866 -1 2298 148 9 3 chr3 203264211 203264556 -24260022 + MER7A DNA MER2_type 1 345 -1 2055 80 98 0 chr3 203265570 203265844 -24258734 - AluSq SINE Alu -12 301 1 1794 99 159 4 chr3 203266776 203267028 -24257550 + AluSc SINE Alu 1 291 -8 383 266 102 21 chr3 203267757 203267775 -24256803 + MIR SINE MIR 58 73 -189 2105 104 21 0 chr3 203267775 203268093 -24256485 - AluSq SINE Alu 0 324 1 383 266 102 21 chr3 203268093 203268262 -24256316 + MIR SINE MIR 73 249 -13 299 196 31 103 chr3 203268364 203268461 -24256117 + L2 LINE L2 3168 3257 -15 265 229 0 29 chr3 203268477 203268547 -24256031 - L1MC4a LINE L1 -64 7744 7677 2708 108 5 19 chr3 203270105 203270474 -24254104 + THE1B LTR MaLR 1 364 0 2737 132 14 29 chr3 203272034 203272409 -24252169 + MLT2D LTR ERVL 4 374 -40 405 39 0 0 chr3 203272409 203272460 -24252118 + (CA)n Simple_repeat Simple_repeat 2 52 0 2737 132 14 29 chr3 203272460 203272501 -24252077 + MLT2D LTR ERVL 374 414 0 1941 52 0 0 chr3 203272563 203272793 -24251785 + L1PA12 LINE L1 5939 6168 0 340 277 22 66 chr3 203273130 203273267 -24251311 + MIR SINE MIR 3 133 -129 841 316 101 11 chr3 203273526 203273902 -24250676 - MLT1J2 LTR MaLR -19 431 22 564 267 168 5 chr3 203275593 203275784 -24248794 - MIR SINE MIR -6 256 35 765 250 81 30 chr3 203275797 203276036 -24248542 - MIR SINE MIR 0 262 19 524 291 158 23 chr3 203276086 203276616 -24247962 - L1MC5 LINE L1 -91 7870 7269 424 283 40 39 chr3 203276798 203277083 -24247495 - L1MC4 LINE L1 -773 7188 6960 204 332 109 21 chr3 203277204 203277397 -24247181 + MIR SINE MIR 47 256 -6 2356 100 0 0 chr3 203278443 203278752 -24245826 - AluSg SINE Alu -1 309 1 192 319 18 140 chr3 203279783 203280119 -24244459 - L2 LINE L2 -2 3270 2976 2037 106 22 0 chr3 203280275 203280550 -24244028 + AluSq SINE Alu 1 281 -32 195 42 0 0 chr3 203280552 203280576 -24244002 + (TAAA)n Simple_repeat Simple_repeat 1 24 0 445 258 104 70 chr3 203281176 203281475 -24243103 + MARNA DNA Mariner 144 452 -134 507 88 4 10 chr3 203281502 203281572 -24243006 - MSTD LTR MaLR 0 396 341 2103 113 0 0 chr3 203281572 203281884 -24242694 + AluSx SINE Alu 1 312 0 507 88 4 10 chr3 203281884 203281898 -24242680 - MSTD LTR MaLR -55 341 328 1318 158 4 31 chr3 203281907 203282135 -24242443 - MSTD LTR MaLR -174 222 1 183 250 250 20 chr3 203282253 203282353 -24242225 + MIR SINE MIR 113 235 -27 225 250 0 0 chr3 203282436 203282488 -24242090 - MARNA DNA Mariner -42 544 493 1876 147 3 32 chr3 203282749 203283062 -24241516 + AluJo SINE Alu 6 309 -3 2216 177 42 0 chr3 203284192 203284576 -24240002 + MER93a LTR ERV1 3 402 0 543 200 118 18 chr3 203284902 203285072 -24239506 + MER5C DNA MER1_type 7 193 -131 231 255 0 0 chr3 203285093 203285140 -24239438 + A-rich Low_complexity Low_complexity 1 47 0 831 276 125 7 chr3 203285559 203285856 -24238722 - MER102b DNA MER1_type -1 340 9 2206 122 0 3 chr3 203286014 203286310 -24238268 + AluSx SINE Alu 6 300 -12 2865 177 42 72 chr3 203287928 203288110 -24236468 + MER4D LTR ERV1 1 187 -716 197 33 33 0 chr3 203288110 203288140 -24236438 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1681 174 0 7 chr3 203288142 203288412 -24236166 - AluJb SINE Alu -30 282 15 2865 177 42 72 chr3 203288412 203288911 -24235667 + MER4D LTR ERV1 188 665 -238 1325 185 0 13 chr3 203288965 203289197 -24235381 + MER4E LTR ERV1 550 778 -1 30 0 0 0 chr3 203289619 203289649 -24234929 + AT_rich Low_complexity Low_complexity 1 30 0 180 179 0 0 chr3 203290944 203290983 -24233595 + CT-rich Low_complexity Low_complexity 4 42 0 2348 105 0 0 chr3 203292093 203292399 -24232179 + AluSq SINE Alu 1 306 -7 2273 152 46 0 chr3 203292885 203293234 -24231344 - MLT1A1 LTR MaLR 0 365 1 233 225 0 0 chr3 203293289 203293329 -24231249 + L1ME3 LINE L1 6036 6075 -87 2186 79 0 14 chr3 203293790 203294080 -24230498 - AluSc SINE Alu -2 307 22 1498 161 75 18 chr3 203294365 203294645 -24229933 + AluSx SINE Alu 3 298 -14 363 23 0 0 chr3 203296037 203296081 -24228497 + (CA)n Simple_repeat Simple_repeat 2 45 0 2112 122 0 7 chr3 203296724 203297012 -24227566 + AluSx SINE Alu 1 286 -26 357 308 26 13 chr3 203297630 203297786 -24226792 - MIR SINE MIR -85 177 20 250 289 133 0 chr3 203299572 203299662 -24224916 + L2 LINE L2 3150 3251 -21 328 221 127 83 chr3 203302848 203303029 -24221549 - L2 LINE L2 -12 3301 3113 720 195 103 46 chr3 203304145 203304175 -24220403 + MER3 DNA MER1_type 4 31 -178 2529 162 63 4 chr3 203304175 203304633 -24219945 + MER31A LTR ERV1 1 485 0 720 195 103 46 chr3 203304633 203304797 -24219781 + MER3 DNA MER1_type 31 209 0 266 301 84 0 chr3 203304797 203304865 -24219713 + MLT1J2 LTR MaLR 254 328 -122 450 0 0 0 chr3 203304865 203304915 -24219663 + (A)n Simple_repeat Simple_repeat 1 50 0 426 237 20 99 chr3 203305013 203305082 -24219496 - MIR SINE MIR -99 163 111 2407 89 3 0 chr3 203305082 203305384 -24219194 + AluSp SINE Alu 1 303 -10 426 237 20 99 chr3 203305384 203305466 -24219112 - MIR SINE MIR -151 111 24 412 21 0 0 chr3 203305908 203305956 -24218622 + MADE1 DNA Mariner 1 48 -32 711 222 80 40 chr3 203306312 203306537 -24218041 - MIR SINE MIR -25 237 4 290 339 23 29 chr3 203307611 203307785 -24216793 + MIR3 SINE MIR 20 192 -16 2453 84 3 0 chr3 203307785 203308095 -24216483 - AluSq SINE Alu -2 311 1 245 224 216 80 chr3 203309011 203309136 -24215442 - MIR SINE MIR -68 194 53 212 240 80 13 chr3 203309750 203309825 -24214753 - MIR SINE MIR -64 198 119 342 0 0 0 chr3 203310281 203310319 -24214259 + (TG)n Simple_repeat Simple_repeat 2 39 0 280 238 16 0 chr3 203310397 203310460 -24214118 + L1ME4a LINE L1 5988 6051 -70 2506 144 58 22 chr3 203310494 203310905 -24213673 + MSTB LTR MaLR 1 426 0 2073 108 0 14 chr3 203311424 203311759 -24212819 - AluY SINE Alu 0 331 1 22 0 0 0 chr3 203311945 203311967 -24212611 + AT_rich Low_complexity Low_complexity 1 22 0 394 276 58 87 chr3 203312663 203312975 -24211603 - MLT1K LTR MaLR -90 498 196 2913 230 28 42 chr3 203313271 203313652 -24210926 - L1ME1 LINE L1 -3 6232 5847 1873 142 40 116 chr3 203313652 203314074 -24210504 + MLT1B LTR MaLR 1 390 0 2913 230 28 42 chr3 203314074 203314269 -24210309 - L1ME1 LINE L1 -388 5847 5651 212 0 36 0 chr3 203314269 203314297 -24210281 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 2241 89 0 0 chr3 203314301 203314606 -24209972 + AluSx SINE Alu 1 305 0 2913 230 28 42 chr3 203314606 203314905 -24209673 - L1ME1 LINE L1 -587 5648 5366 * 6664 63 1 5 chr3 203314896 203315733 -24208845 - L1PA8 LINE L1 -4 6168 5335 2171 278 27 25 chr3 203315708 203316421 -24208157 - L1ME1 LINE L1 -5562 834 121 * 996 175 0 0 chr3 203316452 203316612 -24207966 + AluSg/x SINE Alu 137 296 -16 2115 128 0 14 chr3 203316772 203317068 -24207510 - AluSx SINE Alu -17 295 4 468 111 20 131 chr3 203317131 203317170 -24207408 - MER58C DNA MER1_type -2206 214 172 1741 149 87 0 chr3 203317170 203317445 -24207133 + AluSg SINE Alu 1 299 -11 468 111 20 131 chr3 203317445 203317504 -24207074 - MER58C DNA MER1_type -2248 172 127 24 0 0 0 chr3 203317515 203317539 -24207039 + AT_rich Low_complexity Low_complexity 1 24 0 1775 158 17 0 chr3 203317871 203318163 -24206415 + AluSx SINE Alu 1 297 -15 2321 160 22 83 chr3 203318504 203318999 -24205579 + LTR32 LTR ERVL 7 471 0 250 272 0 12 chr3 203319140 203319221 -24205357 - MER44D DNA MER2_type 0 605 526 * 970 167 92 0 chr3 203319219 203319393 -24205185 - MER47B DNA MER2_type -4 414 225 5650 86 12 0 chr3 203319429 203319829 -24204749 + L1PB1 LINE L1 5380 5795 -356 249 33 0 0 chr3 203319829 203319859 -24204719 + (TG)n Simple_repeat Simple_repeat 2 31 0 5650 86 12 0 chr3 203319859 203320213 -24204365 + L1PB1 LINE L1 5795 6143 -8 476 191 0 24 chr3 203320242 203320326 -24204252 - MER47B DNA MER2_type -336 82 1 * 1063 175 42 46 chr3 203320326 203320355 -24204223 - MER44D DNA MER2_type -1988 503 475 1987 121 32 0 chr3 203320355 203320636 -24203942 + AluSx SINE Alu 1 290 -22 1063 175 42 46 chr3 203320636 203320839 -24203739 - MER44D DNA MER2_type -2016 475 2 386 318 53 21 chr3 203320926 203321178 -24203400 + MLT1I LTR MaLR 68 332 -114 1652 175 135 22 chr3 203321178 203321533 -24203045 - MSTD LTR MaLR -1 395 1 386 318 53 21 chr3 203321533 203321548 -24203030 + MLT1I LTR MaLR 332 345 -101 461 202 138 0 chr3 203321646 203321755 -24202823 + MER31B LTR ERV1 5 128 -338 2096 163 30 35 chr3 203321756 203322312 -24202266 - MLT2A2 LTR ERVL 0 554 3 1308 175 123 12 chr3 203322314 203322648 -24201930 + MER31A LTR ERV1 110 543 0 218 260 151 0 chr3 203324525 203324598 -24199980 + MIR3 SINE MIR 111 194 -14 2311 99 3 6 chr3 203327531 203327844 -24196734 - AluSx SINE Alu 0 312 1 303 28 0 0 chr3 203328130 203328166 -24196412 + (TTTA)n Simple_repeat Simple_repeat 2 37 0 3491 80 0 5 chr3 203328369 203328725 -24195853 - L1PB1 LINE L1 -2 6149 5793 309 51 0 0 chr3 203328725 203328764 -24195814 + (TG)n Simple_repeat Simple_repeat 2 40 0 3491 80 0 5 chr3 203328764 203328775 -24195803 - L1PB1 LINE L1 -358 5793 5783 2408 91 0 0 chr3 203328775 203329072 -24195506 - AluSg SINE Alu -13 297 1 3491 80 0 5 chr3 203329072 203329143 -24195435 - L1PB1 LINE L1 -368 5783 5712 335 228 98 22 chr3 203329278 203329370 -24195208 - MER20B DNA MER1_type -576 207 109 236 239 0 0 chr3 203329553 203329599 -24194979 - MIR SINE MIR -108 154 109 2321 102 0 3 chr3 203330173 203330476 -24194102 - AluSg SINE Alu -8 302 1 183 205 0 0 chr3 203331111 203331150 -24193428 + (CA)n Simple_repeat Simple_repeat 2 40 0 209 258 0 65 chr3 203331248 203331310 -24193268 - L2 LINE L2 -10 3262 3205 269 160 40 0 chr3 203331670 203331720 -24192858 - L2 LINE L2 0 3313 3262 250 271 8 51 chr3 203331824 203331942 -24192636 + MLT1H LTR MaLR 50 162 -387 254 236 0 82 chr3 203332103 203332213 -24192365 + MLT1I LTR MaLR 432 532 -17 654 253 6 12 chr3 203332760 203332926 -24191652 - MER117 DNA MER1_type -26 171 7 2106 123 3 7 chr3 203332970 203333272 -24191306 - AluSp SINE Alu -12 301 1 241 274 32 0 chr3 203333354 203333416 -24191162 + MIR SINE MIR 84 147 -115 1873 150 0 14 chr3 203333800 203334094 -24190484 + AluSq SINE Alu 1 290 -23 999 241 15 30 chr3 203334859 203335000 -24189578 + L1ME1 LINE L1 5904 6041 -125 2158 114 61 73 chr3 203335000 203335395 -24189183 + MLT1B LTR MaLR 1 390 0 999 241 15 30 chr3 203335395 203335515 -24189063 + L1ME1 LINE L1 6041 6161 -5 1822 157 21 0 chr3 203335544 203335844 -24188734 - AluSx SINE Alu 0 306 1 1681 163 71 31 chr3 203336557 203336824 -24187754 - L1MD3 LINE L1 -185 7810 7520 2172 121 0 3 chr3 203336824 203337121 -24187457 - AluSc SINE Alu -13 296 1 1681 163 71 31 chr3 203337121 203337245 -24187333 - L1MD3 LINE L1 -475 7520 7403 281 250 60 24 chr3 203337248 203337332 -24187246 - MLT1F1 LTR MaLR -445 122 36 269 226 32 0 chr3 203337364 203337426 -24187152 - L1MD3 LINE L1 -893 7102 7039 266 307 13 0 chr3 203337943 203338018 -24186560 - L2 LINE L2 -9 3304 3229 975 103 48 12 chr3 203338232 203338397 -24186181 + L1MA5 LINE L1 6124 6294 -6 389 308 146 11 chr3 203338815 203339000 -24185578 - MIR SINE MIR -5 257 48 2291 89 16 0 chr3 203339712 203340015 -24184563 + AluSp SINE Alu 1 308 -5 2008 144 0 0 chr3 203340027 203340337 -24184241 + AluSq SINE Alu 1 310 0 3079 190 65 22 chr3 203340946 203341058 -24183520 + MER82 DNA MER2_type 1 107 -546 2553 70 0 0 chr3 203341058 203341359 -24183219 - AluY SINE Alu -10 301 1 3079 190 65 22 chr3 203341359 203341872 -24182706 + MER82 DNA MER2_type 107 653 0 2436 163 35 16 chr3 203342009 203342433 -24182145 + MSTB1 LTR MaLR 1 432 0 411 287 110 6 chr3 203342569 203342733 -24181845 + L1ME LINE L1 5524 5704 -417 1515 177 0 11 chr3 203342807 203343067 -24181511 + AluSx SINE Alu 40 296 -16 23 33 0 0 chr3 203343188 203343218 -24181360 + AT_rich Low_complexity Low_complexity 1 30 0 2364 98 3 0 chr3 203344024 203344329 -24180249 + AluSg SINE Alu 1 306 -4 972 189 60 15 chr3 203344564 203344765 -24179813 - MER2 DNA MER2_type -135 210 1 213 235 29 73 chr3 203344817 203344885 -24179693 - L2 LINE L2 -5 3267 3203 1491 84 0 11 chr3 203345387 203345577 -24179001 + AluSx SINE Alu 5 192 -120 2134 96 3 3 chr3 203346911 203347249 -24177329 - AluY SINE Alu 0 338 1 1336 140 5 0 chr3 203347250 203347443 -24177135 + AluSg/x SINE Alu 104 297 -15 207 0 0 0 chr3 203398097 203398120 -24126458 + (A)n Simple_repeat Simple_repeat 1 23 0 203 242 76 115 chr3 203398753 203398910 -24125668 - MIR SINE MIR -13 249 99 203 346 56 0 chr3 203398939 203399046 -24125532 + MIR SINE MIR 39 151 -57 2199 114 7 0 chr3 203399046 203399344 -24125234 + AluSp SINE Alu 1 300 -13 22 56 0 0 chr3 203400810 203400846 -24123732 + AT_rich Low_complexity Low_complexity 1 36 0 2151 74 21 89 chr3 203401157 203401495 -24123083 - AluYb8 SINE Alu -3 315 1 197 119 24 0 chr3 203401497 203401539 -24123039 + CT-rich Low_complexity Low_complexity 1 43 0 243 0 0 0 chr3 203402887 203402914 -24121664 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 366 259 128 72 chr3 203403132 203403383 -24121195 + MLT1L LTR MaLR 3 267 -348 2332 96 3 3 chr3 203403394 203403697 -24120881 + AluSx SINE Alu 1 303 -9 961 174 181 4 chr3 203405019 203405104 -24119474 + MER33 DNA MER1_type 12 81 -2504 276 30 0 0 chr3 203405104 203405137 -24119441 + (CA)n Simple_repeat Simple_repeat 2 34 0 961 174 181 4 chr3 203405137 203405316 -24119262 + MER33 DNA MER1_type 81 323 -1 224 242 273 23 chr3 203405334 203405466 -24119112 + MER5A DNA MER1_type 11 175 -14 574 249 231 9 chr3 203405504 203405733 -24118845 + MER5C DNA MER1_type 45 324 0 2082 124 24 13 chr3 203407139 203407437 -24117141 - AluSx SINE Alu -11 301 1 247 294 9 28 chr3 203407605 203407714 -24116864 - L1MC4a LINE L1 -1847 5961 5855 2015 121 23 20 chr3 203408289 203408594 -24115984 - AluSg SINE Alu -1 309 4 761 267 67 85 chr3 203409045 203409525 -24115053 + L2 LINE L2 2834 3304 -9 410 254 57 16 chr3 203409551 203409673 -24114905 + L2 LINE L2 3187 3313 0 233 280 0 0 chr3 203409778 203409828 -24114750 + (CAA)n Simple_repeat Simple_repeat 3 52 0 214 375 77 0 chr3 203409926 203410030 -24114548 - MIR SINE MIR -62 146 35 495 300 64 32 chr3 203410453 203410703 -24113875 - L2 LINE L2 0 3313 3056 1978 107 0 0 chr3 203411957 203412227 -24112351 - AluSq SINE Alu -11 302 33 4461 148 62 48 chr3 203412393 203413063 -24111515 - L1PA16 LINE L1 0 6166 5462 2127 147 0 3 chr3 203413063 203413375 -24111203 + AluSx SINE Alu 2 312 0 4461 148 62 48 chr3 203413375 203413997 -24110581 - L1PA16 LINE L1 -704 5462 4850 347 353 27 54 chr3 203414461 203414722 -24109856 - L2 LINE L2 -171 3101 2848 207 310 155 8 chr3 203415064 203415193 -24109385 - MIR SINE MIR -95 167 20 2346 235 20 32 chr3 203415419 203416175 -24108403 - L1MEc LINE L1 -3136 3404 2658 320 267 20 0 chr3 203416310 203416411 -24108167 - L1MEc LINE L1 -4647 2074 1972 676 135 48 0 chr3 203416505 203416631 -24107947 + L1MA6 LINE L1 6145 6276 -24 348 247 147 68 chr3 203416628 203416654 -24107924 - L1MEc LINE L1 -4613 1968 1945 * 2260 156 57 57 chr3 203416654 203417159 -24107419 - MLT1D LTR MaLR 0 505 1 348 247 147 68 chr3 203417159 203417500 -24107078 - L1MEc LINE L1 -4636 1945 1531 298 294 110 13 chr3 203417541 203417769 -24106809 - L1MEc LINE L1 -6110 611 362 186 299 201 21 chr3 203418394 203418538 -24106040 + MIR SINE MIR 21 190 -72 641 215 0 30 chr3 203418783 203418918 -24105660 + FLAM_A SINE Alu 1 131 -2 230 0 33 0 chr3 203420066 203420096 -24104482 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 8833 100 86 32 chr3 203420581 203421008 -24103570 + pTR5 LTR ERV1 741 1143 -1295 195 42 0 0 chr3 203421008 203421032 -24103546 + (CCCCCG)n Simple_repeat Simple_repeat 1 24 0 8833 100 86 32 chr3 203421032 203422214 -24102364 + pTR5 LTR ERV1 1143 2438 0 1257 236 59 54 chr3 203423144 203423872 -24100706 + L1ME3 LINE L1 5464 6161 -5 297 328 46 0 chr3 203424284 203424458 -24100120 + HERVL LTR ERVL 3741 3922 -1732 2021 106 7 7 chr3 203424519 203424801 -24099777 - AluSq SINE Alu -6 307 26 416 336 70 8 chr3 203425278 203425494 -24099084 + MIR SINE MIR 30 256 -6 402 235 139 0 chr3 203426859 203426974 -24097604 - MIR SINE MIR -8 254 124 22 35 0 0 chr3 203427053 203427082 -24097496 + AT_rich Low_complexity Low_complexity 1 29 0 335 265 31 31 chr3 203427321 203427419 -24097159 - MER5A DNA MER1_type -77 112 15 230 363 0 12 chr3 203428248 203428328 -24096250 + MIR SINE MIR 20 98 -164 405 265 23 38 chr3 203428683 203428815 -24095763 + CT-rich Low_complexity Low_complexity 5 134 0 19803 135 35 17 chr3 203429362 203433026 -24091552 - L1P LINE L1 -1700 4446 717 313 375 29 7 chr3 203433741 203433877 -24090701 - MIR SINE MIR -67 195 57 267 320 39 0 chr3 203435085 203435163 -24089415 - L2 LINE L2 -50 3263 3183 268 287 182 68 chr3 203437423 203437719 -24086859 - L2 LINE L2 -72 3200 2871 1888 180 61 54 chr3 203437775 203438348 -24086230 + MER69 DNA AcHobo 1937 2513 -13 332 329 51 7 chr3 203438458 203438595 -24085983 - MIR3 SINE MIR -62 146 4 340 230 100 115 chr3 203439538 203439770 -24084808 - MIR3 SINE MIR -11 251 2 256 325 0 0 chr3 203440595 203440672 -24083906 + (TATATG)n Simple_repeat Simple_repeat 2 78 0 2935 246 33 72 chr3 203440680 203441433 -24083145 + L1MC4 LINE L1 6659 7440 -602 2064 140 0 7 chr3 203441433 203441725 -24082853 - AluSx SINE Alu -21 291 2 2935 246 33 72 chr3 203441725 203441888 -24082690 + L1MC4 LINE L1 7440 7608 -434 2136 66 0 18 chr3 203441888 203442160 -24082418 - AluY SINE Alu -4 307 41 2935 246 33 72 chr3 203442160 203442533 -24082045 + L1MC4 LINE L1 7608 7899 -143 23 101 0 0 chr3 203442539 203442618 -24081960 + AT_rich Low_complexity Low_complexity 1 79 0 359 198 41 50 chr3 203442645 203442766 -24081812 + L1MC4 LINE L1 7922 8041 -1 444 246 91 17 chr3 203442792 203442957 -24081621 + MIR SINE MIR 2 171 -66 1632 164 19 0 chr3 203442991 203443253 -24081325 - AluJb SINE Alu -45 267 1 320 293 100 21 chr3 203444354 203444494 -24080084 + MIR SINE MIR 100 250 -12 479 299 76 0 chr3 203445152 203445309 -24079269 + MIR SINE MIR 20 188 -74 618 259 138 11 chr3 203447358 203447741 -24076837 + MLT1L LTR MaLR 141 613 -2 231 114 0 0 chr3 203448003 203448038 -24076540 + (CA)n Simple_repeat Simple_repeat 1 35 0 980 238 58 67 chr3 203448287 203448719 -24075859 + MLT1F1 LTR MaLR 140 567 0 391 373 37 0 chr3 203448770 203448904 -24075674 + L2 LINE L2 3102 3240 -32 36 23 0 0 chr3 203449020 203449063 -24075515 + AT_rich Low_complexity Low_complexity 1 43 0 341 338 70 28 chr3 203449179 203449359 -24075219 + MIR3 SINE MIR 4 193 -15 813 263 24 0 chr3 203450670 203450875 -24073703 - MER63A DNA MER1_type 0 210 1 24 0 0 0 chr3 203451566 203451590 -24072988 + AT_rich Low_complexity Low_complexity 1 24 0 526 285 70 48 chr3 203452009 203452237 -24072341 + MIR SINE MIR 22 254 -8 365 372 21 29 chr3 203452253 203452492 -24072086 - L2 LINE L2 -350 2964 2728 1621 203 36 61 chr3 203452612 203453191 -24071387 - MER67B LTR ERV1 -82 452 5 892 231 56 16 chr3 203453481 203453732 -24070846 - MIR SINE MIR 0 262 2 264 273 152 30 chr3 203454224 203454323 -24070255 + L2 LINE L2 3201 3311 -2 28 50 0 17 chr3 203455684 203455715 -24068863 + AT_rich Low_complexity Low_complexity 1 32 -27 1732 167 14 0 chr3 203455715 203456002 -24068576 + AluJo SINE Alu 1 291 -21 28 50 0 17 chr3 203456002 203456030 -24068548 + AT_rich Low_complexity Low_complexity 32 59 0 6622 92 3 0 chr3 203456162 203457908 -24066670 + L1PA8 LINE L1 4427 6171 -1 195 222 0 0 chr3 203459071 203459116 -24065462 + CT-rich Low_complexity Low_complexity 3 47 0 1367 181 55 71 chr3 203460173 203460649 -24063929 + LTR37B LTR ERV1 1 468 0 273 29 0 0 chr3 203460665 203460699 -24063879 + (TA)n Simple_repeat Simple_repeat 2 35 0 557 157 9 0 chr3 203461866 203461981 -24062597 + CT-rich Low_complexity Low_complexity 2 117 0 2413 112 3 0 chr3 203462076 203462388 -24062190 + AluSp SINE Alu 1 313 0 2189 102 150 5 chr3 203463167 203463541 -24061037 + MSTA LTR MaLR 1 428 0 890 169 44 36 chr3 203463714 203463939 -24060639 - AluJo SINE Alu -44 268 42 26 50 0 0 chr3 203464386 203464426 -24060152 + AT_rich Low_complexity Low_complexity 1 40 0 1137 48 7 28 chr3 203465024 203465169 -24059409 + AluYb8 SINE Alu 2 143 -175 263 0 0 0 chr3 203465169 203465209 -24059369 + AluY SINE Alu 261 300 0 1730 246 85 49 chr3 203465243 203465920 -24058658 - L1M4 LINE L1 -1492 4654 3934 324 0 0 0 chr3 203465920 203465956 -24058622 + (TTTA)n Simple_repeat Simple_repeat 4 39 0 1730 246 85 49 chr3 203465956 203466195 -24058383 - L1M4 LINE L1 -2212 3934 3705 1035 188 107 69 chr3 203466489 203466835 -24057743 + L1ME2 LINE L1 5797 6155 -9 2051 120 0 0 chr3 203466941 203467224 -24057354 + AluSg SINE Alu 26 308 -2 862 117 197 21 chr3 203467875 203468060 -24056518 - Tigger3(Golem) DNA MER2_type -47 2982 2765 425 167 0 0 chr3 203468060 203468138 -24056440 - MADE1 DNA Mariner 0 80 3 451 173 0 0 chr3 203468141 203468216 -24056362 - Tigger3(Golem) DNA MER2_type -2954 75 1 3660 60 0 4 chr3 203468276 203468743 -24055835 - L1PA7 LINE L1 -3 6151 5687 1256 187 21 21 chr3 203468824 203469113 -24055465 + SVA Other Other 432 720 -666 288 0 0 0 chr3 203469219 203469251 -24055327 + (TG)n Simple_repeat Simple_repeat 1 32 0 11192 116 16 29 chr3 203469251 203474702 -24049876 - L1P3 LINE L1 -460 7132 473 233 347 89 16 chr3 203475294 203475418 -24049160 - MER5A DNA MER1_type -21 168 36 * 285 333 95 8 chr3 203475308 203475434 -24049144 + MER5A DNA MER1_type 47 183 -6 394 290 175 22 chr3 203475526 203475709 -24048869 + MIR SINE MIR 2 212 -50 1768 175 3 16 chr3 203476314 203476623 -24047955 + AluJo SINE Alu 8 312 0 180 0 0 0 chr3 203476799 203476819 -24047759 + (TAA)n Simple_repeat Simple_repeat 2 21 0 539 244 167 6 chr3 203477383 203477539 -24047039 - MER5A DNA MER1_type 0 189 9 2128 116 3 0 chr3 203477598 203477882 -24046696 - AluSx SINE Alu -27 285 1 228 280 62 49 chr3 203477890 203478133 -24046445 - L1ME LINE L1 -299 5822 5577 505 209 152 6 chr3 203478762 203478920 -24045658 - MER96B DNA MER1_type? -235 182 2 201 379 35 44 chr3 203479225 203479428 -24045150 - L2 LINE L2 -2 3270 3070 999 198 6 0 chr3 203480333 203480510 -24044068 - MER5B DNA MER1_type 0 178 1 210 71 0 0 chr3 203480555 203480583 -24043995 + (A)n Simple_repeat Simple_repeat 1 28 0 2153 117 0 0 chr3 203481236 203481541 -24043037 + AluSx SINE Alu 2 306 0 246 298 135 39 chr3 203481690 203481794 -24042784 + L2 LINE L2 3142 3255 -17 237 354 76 42 chr3 203482265 203482689 -24041889 + L2 LINE L2 2620 3057 -215 243 0 0 0 chr3 203483431 203483458 -24041120 + (A)n Simple_repeat Simple_repeat 1 27 0 185 343 210 3 chr3 203484172 203484519 -24040059 + L2 LINE L2 2553 2971 -343 2295 77 3 10 chr3 203484839 203485139 -24039439 + AluY SINE Alu 1 298 -13 201 178 22 0 chr3 203485732 203485777 -24038801 + (CA)n Simple_repeat Simple_repeat 2 47 0 354 348 96 5 chr3 203486524 203486711 -24037867 - MIR SINE MIR -54 208 5 195 337 105 11 chr3 203486731 203486826 -24037752 + MIR SINE MIR 29 132 -76 281 217 0 0 chr3 203487535 203487581 -24036997 + L2 LINE L2 3253 3298 -15 345 24 0 0 chr3 203487891 203487933 -24036645 + (TTTA)n Simple_repeat Simple_repeat 3 44 0 7234 48 8 9 chr3 203487933 203489401 -24035177 - SVA Other Other -799 1363 54 374 0 0 21 chr3 203489401 203489448 -24035130 + (GGGAGA)n Simple_repeat Simple_repeat 4 49 0 555 238 5 60 chr3 203489843 203490028 -24034550 + MER104 DNA Tc2 1 175 -5 276 203 0 16 chr3 203490566 203490630 -24033948 + LTR33A LTR ERVL 446 508 -15 1834 99 4 15 chr3 203490736 203490999 -24033579 - AluSc SINE Alu -15 294 35 280 312 0 0 chr3 203491320 203491397 -24033181 + MIR SINE MIR 76 152 -110 22 0 0 0 chr3 203492100 203492122 -24032456 + AT_rich Low_complexity Low_complexity 1 22 0 257 302 13 44 chr3 203492259 203492410 -24032168 + MIR SINE MIR 1 205 -57 927 142 45 7 chr3 203492418 203492573 -24032005 - FRAM SINE Alu -1 165 5 367 204 105 53 chr3 203493077 203493229 -24031349 - MER103 DNA DNA 0 166 7 2900 240 47 14 chr3 203493440 203494908 -24029670 + L1M3c LINE L1 2 1566 -4575 681 121 207 81 chr3 203494912 203495110 -24029468 + MER44D DNA MER2_type 5 497 -112 4276 208 76 125 chr3 203495111 203496955 -24027623 + MER52A LTR ERV1 3 1755 0 599 165 18 0 chr3 203496955 203497064 -24027514 + MER44D DNA MER2_type 493 603 -6 2230 243 52 42 chr3 203497070 203497666 -24026912 + L1M1 LINE L1 2578 3166 -4399 2091 130 0 3 chr3 203497666 203497951 -24026627 + AluSg SINE Alu 6 289 -21 2230 243 52 42 chr3 203497951 203498580 -24025998 + L1M1 LINE L1 3166 3824 -3741 323 175 56 16 chr3 203498607 203498733 -24025845 + (TA)n Simple_repeat Simple_repeat 1 131 0 243 120 40 0 chr3 203498733 203498783 -24025795 - L1 LINE L1 -3756 2390 2339 477 210 29 7 chr3 203498813 203498951 -24025627 + L1M1 LINE L1 3817 3957 -3608 1526 178 56 4 chr3 203501098 203501368 -24023210 + AluJo SINE Alu 1 284 -28 358 318 80 0 chr3 203501443 203501594 -24022984 - MIR3 SINE MIR -16 192 30 445 302 63 24 chr3 203501770 203501975 -24022603 - MIR SINE MIR -30 232 20 21 0 0 0 chr3 203502230 203502251 -24022327 + AT_rich Low_complexity Low_complexity 1 21 0 1731 190 36 22 chr3 203504008 203504366 -24020212 + MLT1A1 LTR MaLR 3 365 0 2530 123 36 0 chr3 203504661 203505050 -24019528 + L1P3 LINE L1 2 404 -6057 853 163 163 30 chr3 203505191 203505424 -24019154 + Tigger3(Golem) DNA MER2_type 2763 3026 -3 2923 196 99 107 chr3 203507211 203508519 -24016059 + MER52A LTR ERV1 1 1278 0 218 71 0 48 chr3 203508908 203508950 -24015628 + (TTTTA)n Simple_repeat Simple_repeat 2 41 0 2111 127 3 0 chr3 203508960 203509243 -24015335 - AluSx SINE Alu -27 285 2 24 32 0 0 chr3 203509251 203509282 -24015296 + AT_rich Low_complexity Low_complexity 1 31 0 292 307 157 7 chr3 203510385 203510538 -24014040 + MIR3 SINE MIR 30 205 -3 1299 179 49 13 chr3 203510766 203511073 -24013505 - MER33 DNA MER1_type -4 320 3 4221 171 29 49 chr3 203511678 203513336 -24011242 - L1MA7 LINE L1 -2 6289 4673 499 251 104 44 chr3 203514851 203515034 -24009544 + MIR SINE MIR 12 205 -57 302 196 11 0 chr3 203515290 203515382 -24009196 + (TGGA)n Simple_repeat Simple_repeat 4 96 0 263 302 75 80 chr3 203515547 203515759 -24008819 - L3 LINE CR1 -105 1472 1262 248 352 0 0 chr3 203516248 203516319 -24008259 - L2 LINE L2 -2 3270 3200 2281 105 6 10 chr3 203516432 203516746 -24007832 + AluSq SINE Alu 1 313 0 541 252 26 0 chr3 203518228 203518379 -24006199 + MIR SINE MIR 70 224 -38 464 307 113 16 chr3 203518998 203519327 -24005251 + L2 LINE L2 2686 3051 -221 602 107 0 0 chr3 203519481 203519565 -24005013 - AluS SINE Alu -228 84 1 1914 100 0 0 chr3 203519707 203519958 -24004620 + AluSx SINE Alu 3 253 -59 316 222 56 69 chr3 203519961 203520105 -24004473 + L2 LINE L2 3110 3251 -62 300 238 211 20 chr3 203520200 203520347 -24004231 + MIR SINE MIR 73 247 -15 * 833 307 137 24 chr3 203520341 203520967 -24003611 + L2 LINE L2 2618 3313 0 278 336 28 28 chr3 203521862 203521969 -24002609 + L2 LINE L2 3155 3261 -11 308 198 70 35 chr3 203522218 203522304 -24002274 + MIR SINE MIR 173 261 -1 181 342 90 9 chr3 203522321 203522432 -24002146 - MER5B DNA MER1_type -32 146 27 257 280 32 64 chr3 203522823 203522948 -24001630 + L2 LINE L2 2306 2426 -888 186 355 69 55 chr3 203523134 203523351 -24001227 + L2 LINE L2 2825 3044 -228 1025 158 0 0 chr3 203523428 203523573 -24001005 + AluSg/x SINE Alu 138 285 -27 181 0 0 0 chr3 203523573 203523593 -24000985 + (TAAA)n Simple_repeat Simple_repeat 1 116 0 1025 158 0 0 chr3 203523593 203523605 -24000973 + AluSg/x SINE Alu 284 295 -17 1828 138 59 0 chr3 203523657 203523946 -24000632 + AluSx SINE Alu 1 306 -6 354 156 0 0 chr3 203524796 203524860 -23999718 + CT-rich Low_complexity Low_complexity 3 66 0 22 70 0 0 chr3 203525233 203525276 -23999302 + AT_rich Low_complexity Low_complexity 1 43 0 248 272 13 59 chr3 203525375 203525481 -23999097 - MIR SINE MIR -110 98 3 554 316 32 16 chr3 203525908 203526098 -23998480 - MIR SINE MIR -41 221 29 270 268 95 63 chr3 203526235 203526425 -23998153 - MLT1J LTR MaLR -92 419 224 22 0 0 0 chr3 203527998 203528020 -23996558 + AT_rich Low_complexity Low_complexity 1 22 0 537 224 133 4 chr3 203528174 203528313 -23996265 - MER5B DNA MER1_type -1 177 35 279 341 96 45 chr3 203529362 203529402 -23995176 + L3b LINE CR1 1137 1174 -409 2454 74 0 3 chr3 203529402 203529714 -23994864 + AluY SINE Alu 1 311 0 279 341 96 45 chr3 203529714 203529987 -23994591 + L3b LINE CR1 1174 1466 -117 311 305 145 0 chr3 203531285 203531416 -23993162 + MIR3 SINE MIR 32 181 -27 50 92 0 0 chr3 203531596 203531737 -23992841 + AT_rich Low_complexity Low_complexity 1 141 0 339 202 38 143 chr3 203532105 203532331 -23992247 - L1ME4a LINE L1 -248 5873 5665 577 188 13 40 chr3 203532538 203532687 -23991891 - L1MA10 LINE L1 -9 6325 6181 1011 263 90 28 chr3 203532689 203533111 -23991467 - L1ME1 LINE L1 -148 6087 5640 4943 252 100 66 chr3 203533274 203534726 -23989852 - L1ME1 LINE L1 -1786 4429 3027 2193 66 7 21 chr3 203534726 203535051 -23989527 + AluSq SINE Alu 1 321 0 4943 252 100 66 chr3 203535051 203535317 -23989261 - L1ME1 LINE L1 -3188 3027 2771 197 23 70 23 chr3 203535317 203535360 -23989218 + A-rich Low_complexity Low_complexity 1 45 0 4943 252 100 66 chr3 203535360 203537958 -23986620 - L1ME1 LINE L1 -3444 2771 9 269 276 71 0 chr3 203537992 203538090 -23986488 - L2 LINE L2 0 3313 3209 1410 227 75 80 chr3 203538147 203538537 -23986041 + L1MC5 LINE L1 6795 7181 -780 2160 107 0 3 chr3 203538537 203538836 -23985742 - AluSx SINE Alu -1 311 14 1410 227 75 80 chr3 203538836 203539167 -23985411 + L1MC5 LINE L1 7181 7512 -449 496 250 41 52 chr3 203539822 203539994 -23984584 + L1MC5 LINE L1 7711 7880 -81 3144 162 41 13 chr3 203540072 203540629 -23983949 + MER6A DNA MER2_type 33 605 0 565 266 0 0 chr3 203540801 203540929 -23983649 - FLAM_A SINE Alu -5 137 10 1418 306 184 36 chr3 203543027 203544549 -23980029 - L2 LINE L2 0 3313 1568 429 221 0 11 chr3 203544619 203544714 -23979864 - MER5B DNA MER1_type -81 97 4 515 299 75 33 chr3 203544816 203545057 -23979521 - L1ME3A LINE L1 -236 5934 5684 25 0 0 0 chr3 203545389 203545414 -23979164 + AT_rich Low_complexity Low_complexity 1 25 0 502 239 156 68 chr3 203545638 203546023 -23978555 + L1ME4a LINE L1 5516 5934 -187 339 132 0 0 chr3 203546036 203546104 -23978474 + (TC)n Simple_repeat Simple_repeat 1 68 0 391 333 24 12 chr3 203547838 203548006 -23976572 + MER5B DNA MER1_type 4 173 -5 401 296 105 40 chr3 203548294 203548666 -23975912 + L1ME4a LINE L1 5715 6110 -11 574 186 1 13 chr3 203549164 203549300 -23975278 - L1MA7 LINE L1 -1 6299 6159 1115 133 6 0 chr3 203549579 203549760 -23974818 + L1MD1 LINE L1 5505 5686 -556 1546 214 34 129 chr3 203549760 203549946 -23974632 + MER74A LTR ERVL 1 203 -355 1692 162 61 17 chr3 203549946 203550305 -23974273 - THE1C LTR MaLR 0 375 1 1546 214 34 129 chr3 203550305 203550730 -23973848 + MER74A LTR ERVL 203 554 -4 2476 186 82 15 chr3 203550733 203551254 -23973324 + L1MD1 LINE L1 5681 6236 -6 216 214 0 0 chr3 203551407 203551449 -23973129 + (CATATA)n Simple_repeat Simple_repeat 6 47 0 372 227 141 23 chr3 203551968 203552096 -23972482 + HERVL40 LTR ERVL 17 159 -5371 350 280 110 17 chr3 203552229 203552347 -23972231 + HERVL40 LTR ERVL 440 568 -4962 1503 190 26 87 chr3 203552462 203552877 -23971701 - MLT1B LTR MaLR 0 390 1 565 239 0 0 chr3 203552877 203552990 -23971588 + HERVL40 LTR ERVL 632 744 -4786 820 301 47 16 chr3 203552990 203553309 -23971269 + HERVL40 LTR ERVL 1297 1625 -3905 2640 262 51 41 chr3 203553379 203554944 -23969634 + HERVL40 LTR ERVL 2058 3708 -1822 300 206 22 43 chr3 203554946 203555038 -23969540 - L1M4 LINE L1 -931 5215 5126 767 245 109 0 chr3 203555118 203555302 -23969276 - MIR SINE MIR -58 204 1 344 304 88 16 chr3 203555333 203555458 -23969120 + L2 LINE L2 3139 3272 0 200 89 22 44 chr3 203556723 203556768 -23967810 + (TAA)n Simple_repeat Simple_repeat 3 46 0 258 303 26 0 chr3 203557125 203557201 -23967377 - MER5B DNA MER1_type -51 127 50 368 313 0 27 chr3 203557945 203558057 -23966521 - MER5B DNA MER1_type -68 110 2 2261 112 0 3 chr3 203559569 203559874 -23964704 + AluSc SINE Alu 3 306 -3 270 180 0 0 chr3 203561092 203561153 -23963425 + A-rich Low_complexity Low_complexity 1 61 0 181 238 0 24 chr3 203561527 203561569 -23963009 - MIR SINE MIR -3 259 219 * 249 327 129 0 chr3 203561535 203561636 -23962942 - L2 LINE L2 -16 3256 3143 432 0 0 0 chr3 203563687 203563735 -23960843 + (CA)n Simple_repeat Simple_repeat 2 49 0 317 292 92 8 chr3 203563735 203563855 -23960723 - MIR SINE MIR -124 138 9 250 235 29 0 chr3 203564036 203564104 -23960474 - L1ME LINE L1 -342 5779 5710 2268 88 0 0 chr3 203564178 203564473 -23960105 + AluSg SINE Alu 1 295 -15 218 191 0 0 chr3 203565351 203565393 -23959185 + T-rich Low_complexity Low_complexity 4 45 0 451 280 34 38 chr3 203565876 203566042 -23958536 - MIR SINE MIR -63 145 2 3390 242 111 36 chr3 203567371 203567539 -23957039 + Zaphod DNA AcHobo 11 165 -3866 11446 27 6 0 chr3 203567539 203569662 -23954916 + L1PA3 LINE L1 4026 6155 0 3390 242 111 36 chr3 203569662 203570990 -23953588 + Zaphod DNA AcHobo 165 1670 -2361 1549 68 16 80 chr3 203571024 203571273 -23953305 - L1PA13 LINE L1 -326 5837 5605 2231 77 22 0 chr3 203571273 203571584 -23952994 + L1PA13 LINE L1 5845 6162 -1 456 261 98 102 chr3 203571595 203572035 -23952543 + Zaphod DNA AcHobo 1684 2121 -1910 1500 252 81 19 chr3 203572301 203572645 -23951933 + L1MC4a LINE L1 5327 5715 -2093 351 44 0 0 chr3 203572645 203572690 -23951888 + (CA)n Simple_repeat Simple_repeat 2 46 0 1500 252 81 19 chr3 203572690 203572861 -23951717 + L1MC4a LINE L1 5715 5874 -1934 566 211 6 34 chr3 203572885 203573060 -23951518 + MER69 DNA AcHobo 2345 2514 -12 307 264 161 13 chr3 203573171 203573326 -23951252 - MER5B DNA MER1_type 0 178 1 22 56 0 0 chr3 203573376 203573412 -23951166 + AT_rich Low_complexity Low_complexity 1 36 0 216 279 108 8 chr3 203573522 203573651 -23950927 + MIR SINE MIR 1 142 -120 350 134 15 0 chr3 203573848 203573915 -23950663 + (TCTA)n Simple_repeat Simple_repeat 4 71 0 3762 93 30 0 chr3 203573994 203574520 -23950058 - L1PA10 LINE L1 -15 6153 5612 599 200 0 0 chr3 203575568 203575668 -23948910 + U6 snRNA snRNA 7 106 -1 2314 171 14 0 chr3 203575690 203576111 -23948467 + L1MB3 LINE L1 5751 6177 -6 340 250 97 40 chr3 203576131 203576255 -23948323 + MER5A DNA MER1_type 59 189 0 205 336 0 45 chr3 203576160 203576270 -23948308 - MER5A DNA MER1_type -83 106 2 * 373 304 85 4 chr3 203576596 203576791 -23947787 - MIR SINE MIR -44 218 3 209 320 113 0 chr3 203576804 203576901 -23947677 - MIR SINE MIR -71 191 84 2267 97 156 3 chr3 203577372 203577743 -23946835 + MSTA LTR MaLR 1 428 0 333 208 19 66 chr3 203579324 203579430 -23945148 + MLT1F-int LTR MaLR 1 101 -1270 1014 266 62 151 chr3 203579502 203580681 -23943897 + MLT1F-int LTR MaLR 292 1365 -6 1415 214 94 75 chr3 203580687 203581219 -23943359 + MLT1F LTR MaLR 1 542 0 326 250 10 42 chr3 203581734 203581830 -23942748 - MIR SINE MIR -157 105 13 22 35 0 0 chr3 203583623 203583652 -23940926 + AT_rich Low_complexity Low_complexity 1 29 0 450 294 80 29 chr3 203584430 203584705 -23939873 - Charlie2 DNA MER1_type -2570 292 4 726 243 136 19 chr3 203584741 203584947 -23939631 - MLT1E1 LTR MaLR -13 641 412 1251 197 38 41 chr3 203584999 203585282 -23939296 - MLT1E1 LTR MaLR -385 265 3 313 172 17 0 chr3 203588111 203588169 -23936409 + L2 LINE L2 3214 3272 0 22 0 0 0 chr3 203588531 203588553 -23936025 + AT_rich Low_complexity Low_complexity 1 22 0 311 286 30 89 chr3 203588977 203589145 -23935433 + MIR3 SINE MIR 3 160 -48 477 0 0 0 chr3 203590677 203590730 -23933848 + (TA)n Simple_repeat Simple_repeat 2 54 0 4545 128 38 1 chr3 203591121 203591810 -23932768 - L1P3 LINE L1 -5742 719 6 2514 271 34 17 chr3 203591854 203592964 -23931614 - L1M4 LINE L1 -2577 3569 2441 5233 241 88 65 chr3 203592973 203596375 -23928203 + L1M3b LINE L1 1 3158 -3192 14584 160 23 15 chr3 203596376 203597584 -23926994 + L1P3 LINE L1 1 1199 -5262 195 100 0 0 chr3 203597584 203597614 -23926964 + (CAA)n Simple_repeat Simple_repeat 3 32 0 14584 160 23 15 chr3 203597614 203600295 -23924283 + L1P3 LINE L1 1199 3986 -2475 394 259 209 19 chr3 203601214 203601372 -23923206 - MIR SINE MIR -6 256 69 274 344 73 0 chr3 203601516 203601667 -23922911 + MIR SINE MIR 63 224 -38 21 0 0 0 chr3 203601673 203601694 -23922884 + AT_rich Low_complexity Low_complexity 1 21 0 544 279 142 5 chr3 203601714 203601918 -23922660 + MIR SINE MIR 30 261 -1 1296 87 5 0 chr3 203602460 203602645 -23921933 - L1PA7 LINE L1 0 6154 5969 526 273 86 30 chr3 203603716 203603914 -23920664 - MIR SINE MIR -48 214 6 342 283 43 7 chr3 203605204 203605342 -23919236 + L1ME4a LINE L1 5964 6106 -15 24 0 0 0 chr3 203606354 203606378 -23918200 + AT_rich Low_complexity Low_complexity 1 24 0 180 77 0 0 chr3 203607594 203607620 -23916958 + (CAAA)n Simple_repeat Simple_repeat 3 28 0 2242 285 86 22 chr3 203608171 203609254 -23915324 + L2 LINE L2 2177 3311 -2 233 260 26 0 chr3 203609259 203609336 -23915242 + HAL1b LINE L1 1222 1300 -48 * 5649 151 52 5 chr3 203609331 203610427 -23914151 - L1MC1 LINE L1 0 6333 5188 313 321 136 7 chr3 203611245 203611385 -23913193 + MIR SINE MIR 91 248 -14 1874 157 74 0 chr3 203612409 203612733 -23911845 + MER7A DNA MER2_type 1 346 0 358 188 240 0 chr3 203613258 203613354 -23911224 - MIR3 SINE MIR -7 201 83 330 338 70 40 chr3 203613485 203613686 -23910892 - MIR SINE MIR -36 226 20 1389 291 128 9 chr3 203614513 203615042 -23909536 - MLT1G1 LTR MaLR -3 592 1 419 309 17 111 chr3 203615888 203616186 -23908392 + L2 LINE L2 3000 3269 -3 460 303 90 28 chr3 203616591 203616769 -23907809 - MIR3 SINE MIR -11 197 9 24 0 0 0 chr3 203616857 203616881 -23907697 + AT_rich Low_complexity Low_complexity 1 24 0 196 330 64 0 chr3 203617932 203618026 -23906552 + L2 LINE L2 3172 3271 -1 1196 173 18 0 chr3 203619106 203619331 -23905247 - L1MD3 LINE L1 -13 7982 7754 388 237 76 8 chr3 203619401 203619519 -23905059 + L2 LINE L2 3187 3312 -1 280 352 77 28 chr3 203620848 203621095 -23903483 + L2 LINE L2 2709 2967 -347 228 86 0 0 chr3 203621192 203621227 -23903351 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 443 292 8 8 chr3 203621235 203621365 -23903213 + L2 LINE L2 3184 3313 0 21 57 0 0 chr3 203622931 203622966 -23901612 + AT_rich Low_complexity Low_complexity 1 35 0 305 109 18 0 chr3 203623719 203623774 -23900804 + (CA)n Simple_repeat Simple_repeat 1 56 0 272 305 78 23 chr3 203623978 203624106 -23900472 + MIR3 SINE MIR 70 204 -4 200 308 15 0 chr3 203624272 203624337 -23900241 + MIR SINE MIR 82 147 -61 194 171 0 0 chr3 203624704 203624739 -23899839 + L2 LINE L2 3266 3300 -13 1686 128 0 8 chr3 203625886 203626155 -23898423 - AluSx SINE Alu 0 310 44 330 26 0 0 chr3 203626491 203626530 -23898048 + (TG)n Simple_repeat Simple_repeat 2 40 0 22 0 0 0 chr3 203627548 203627570 -23897008 + AT_rich Low_complexity Low_complexity 1 22 0 25 31 0 0 chr3 203628265 203628297 -23896281 + AT_rich Low_complexity Low_complexity 1 32 0 981 186 34 15 chr3 203628846 203629050 -23895528 + MER3 DNA MER1_type 2 209 0 301 347 20 48 chr3 203629302 203629449 -23895129 + MIR3 SINE MIR 25 167 -41 260 224 86 0 chr3 203629542 203629600 -23894978 + L2 LINE L2 3251 3313 0 1931 162 0 7 chr3 203630802 203631104 -23893474 - AluSx SINE Alu -12 300 1 30 27 0 0 chr3 203633636 203633673 -23890905 + AT_rich Low_complexity Low_complexity 1 37 0 454 195 73 32 chr3 203633919 203634042 -23890536 + L1MCc LINE L1 22 149 -6274 1502 218 20 28 chr3 203634047 203634405 -23890173 - MLT1A1 LTR MaLR -6 359 5 2638 277 50 72 chr3 203634408 203635000 -23889578 + L1MCc LINE L1 142 746 -5677 1808 191 46 3 chr3 203635000 203635350 -23889228 + MLT1A1 LTR MaLR 1 365 0 2638 277 50 72 chr3 203635350 203636183 -23888395 + L1MCc LINE L1 746 1535 -4888 1829 130 125 38 chr3 203636315 203636478 -23888100 - MSTA LTR MaLR -3 425 278 2103 118 14 0 chr3 203636478 203636765 -23887813 - AluSq SINE Alu -18 295 5 1829 130 125 38 chr3 203636765 203636992 -23887586 - MSTA LTR MaLR -150 278 1 2564 265 74 34 chr3 203637021 203639372 -23885206 + L1MCc LINE L1 1547 4155 -2786 2060 156 75 24 chr3 203639383 203639885 -23884693 - MLT2A2 LTR ERVL 0 554 1 870 244 59 7 chr3 203639891 203640178 -23884400 + L1MCc LINE L1 4168 4469 -2472 28 0 0 0 chr3 203640186 203640214 -23884364 + AT_rich Low_complexity Low_complexity 1 28 0 222 37 0 0 chr3 203640280 203640307 -23884271 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 348 271 96 40 chr3 203640321 203640520 -23884058 - L2 LINE L2 -92 3221 3012 459 211 8 31 chr3 203640566 203640694 -23883884 + L1MEd LINE L1 1084 1208 -4911 2119 114 0 3 chr3 203642347 203642645 -23881933 + AluSx SINE Alu 1 297 -15 2112 86 4 4 chr3 203642649 203642947 -23881631 + AluY SINE Alu 3 300 0 199 390 68 7 chr3 203643233 203643379 -23881199 + MIR SINE MIR 32 186 -76 27 29 0 0 chr3 203643922 203643956 -23880622 + AT_rich Low_complexity Low_complexity 1 34 0 274 278 56 37 chr3 203644392 203644500 -23880078 - L2 LINE L2 -8 3305 3196 374 316 14 7 chr3 203645153 203645292 -23879286 - HAL1 LINE L1 -766 1741 1602 22 0 0 0 chr3 203647154 203647176 -23877402 + AT_rich Low_complexity Low_complexity 1 22 0 2136 111 3 0 chr3 203648080 203648378 -23876200 + AluSx SINE Alu 2 300 -12 416 289 52 46 chr3 203648791 203648964 -23875614 - MIR SINE MIR -12 250 77 264 30 0 0 chr3 203649189 203649222 -23875356 + (TAAAA)n Simple_repeat Simple_repeat 2 34 0 303 321 19 31 chr3 203650325 203650487 -23874091 + MLT2C2 LTR ERVL 42 201 -263 * 1868 241 33 64 chr3 203650344 203650926 -23873652 + MLT1E2 LTR MaLR 61 624 -2 304 236 101 11 chr3 203651084 203651173 -23873405 - MER5A DNA MER1_type -78 111 15 545 277 28 6 chr3 203651906 203652083 -23872495 + L1ME3A LINE L1 5978 6158 -12 25 31 0 0 chr3 203652547 203652579 -23871999 + AT_rich Low_complexity Low_complexity 1 32 0 344 278 16 63 chr3 203652600 203652726 -23871852 + L2 LINE L2 3193 3312 -1 1847 284 70 43 chr3 203653518 203654355 -23870223 + Charlie2b DNA MER1_type 169 1028 -1754 843 244 73 25 chr3 203654409 203654806 -23869772 + Charlie2b DNA MER1_type 2364 2779 -3 1153 71 0 0 chr3 203655892 203656032 -23868546 + AluY SINE Alu 143 282 -29 583 229 159 6 chr3 203656093 203656250 -23868328 + MER5A DNA MER1_type 9 189 0 25 0 0 0 chr3 203656814 203656839 -23867739 + AT_rich Low_complexity Low_complexity 1 25 0 1744 171 3 16 chr3 203657009 203657318 -23867260 - AluJo SINE Alu 0 312 8 3547 155 19 20 chr3 203757606 203758695 -23765883 + L1M1 LINE L1 3062 4157 -3408 301 135 43 31 chr3 203759092 203759255 -23765323 + (TTATA)n Simple_repeat Simple_repeat 5 169 0 240 107 101 13 chr3 203759216 203759375 -23765203 + (TA)n Simple_repeat Simple_repeat 1 173 0 * 1911 136 11 0 chr3 203759375 203759661 -23764917 - AluSx SINE Alu -23 289 1 678 320 51 17 chr3 203759791 203760203 -23764375 - L1ME LINE L1 -4285 1976 1551 295 243 41 15 chr3 203760361 203760495 -23764083 - L1ME LINE L1 -5368 715 578 978 311 38 49 chr3 203760501 203761028 -23763550 - L1ME LINE L1 -5542 528 8 1987 273 47 28 chr3 203761031 203761973 -23762605 - L1MEc LINE L1 -4124 2272 1313 389 284 76 53 chr3 203762994 203763258 -23761320 + MLT1J LTR MaLR 239 508 -3 2061 255 62 87 chr3 203763676 203764653 -23759925 - L1ME3A LINE L1 -39 6131 5231 3275 124 4 0 chr3 203764653 203765154 -23759424 - L1PA16 LINE L1 -4 6162 5660 2061 255 62 87 chr3 203765154 203766177 -23758401 - L1ME3A LINE L1 -939 5231 4184 418 332 68 64 chr3 203766280 203766575 -23758003 - L2 LINE L2 -564 2750 2455 2118 119 14 0 chr3 203766583 203766878 -23757700 + AluSx SINE Alu 1 299 -13 2803 253 140 11 chr3 203767074 203768157 -23756421 + MER69B DNA AcHobo 1 1223 -3 207 0 0 0 chr3 203768522 203768545 -23756033 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 233 248 16 16 chr3 203769102 203769223 -23755355 + (TA)n Simple_repeat Simple_repeat 2 122 0 33 25 0 0 chr3 203769423 203769463 -23755115 + AT_rich Low_complexity Low_complexity 1 40 0 1538 182 93 53 chr3 203769573 203769991 -23754587 + MER63B DNA MER1_type 1 435 -1 483 297 33 16 chr3 203769993 203770175 -23754403 - L2 LINE L2 -512 2802 2618 252 86 0 0 chr3 203770449 203770484 -23754094 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 2075 96 3 31 chr3 203770566 203770889 -23753689 - AluSp SINE Alu 0 315 1 648 341 24 17 chr3 203771317 203771604 -23752974 + Charlie2 DNA MER1_type 37 325 -2537 3492 204 83 12 chr3 203771610 203772546 -23752032 + Charlie2 DNA MER1_type 1860 2862 0 377 234 9 81 chr3 203772884 203772995 -23751583 - MIR SINE MIR -100 162 60 233 348 0 0 chr3 203773041 203773130 -23751448 - L1MC4 LINE L1 -1339 6703 6615 205 176 0 0 chr3 203773785 203773819 -23750759 + A-rich Low_complexity Low_complexity 4 37 0 332 238 149 94 chr3 203773993 203774071 -23750507 - L2 LINE L2 -1 3312 3240 183 42 0 0 chr3 203774071 203774095 -23750483 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1974 125 0 20 chr3 203774097 203774394 -23750184 - AluSq SINE Alu -22 291 1 332 238 149 94 chr3 203774394 203774493 -23750085 - L2 LINE L2 -73 3240 3122 664 296 11 11 chr3 203774576 203774752 -23749826 + MER5B DNA MER1_type 2 177 -1 287 309 73 8 chr3 203774833 203774956 -23749622 - L2 LINE L2 -438 2876 2746 543 128 0 0 chr3 203775228 203775314 -23749264 + (GGAA)n Simple_repeat Simple_repeat 1 86 0 1693 183 7 0 chr3 203775511 203775795 -23748783 - AluJo SINE Alu -26 286 1 24 32 0 0 chr3 203776061 203776092 -23748486 + AT_rich Low_complexity Low_complexity 1 31 0 1247 118 64 0 chr3 203776108 203776328 -23748250 + L1MA5A LINE L1 6061 6294 -3 325 357 79 4 chr3 203776560 203776801 -23747777 + L1M4 LINE L1 4388 4646 -1500 1172 71 0 0 chr3 203777309 203777450 -23747128 + AluY SINE Alu 20 160 -151 751 356 156 4 chr3 203777640 203778145 -23746433 - L3 LINE CR1 -581 996 415 2374 65 0 10 chr3 203780033 203780343 -23744235 + AluY SINE Alu 1 307 -4 460 180 100 10 chr3 203780626 203780726 -23743852 + L1M3 LINE L1 5688 5796 -372 329 145 16 0 chr3 203780835 203780897 -23743681 + GA-rich Low_complexity Low_complexity 2 64 0 204 347 35 52 chr3 203781707 203781880 -23742698 + MIR SINE MIR 22 191 -71 198 338 44 66 chr3 203782139 203782367 -23742211 + L2 LINE L2 2835 3057 -215 23 0 0 0 chr3 203783467 203783490 -23741088 + AT_rich Low_complexity Low_complexity 1 23 0 273 250 192 8 chr3 203784766 203784886 -23739692 + LTR67 LTR ERVL 411 552 -5 260 333 0 56 chr3 203785180 203785306 -23739272 + MIR SINE MIR 70 188 -74 252 305 17 59 chr3 203785473 203785591 -23738987 + MIR SINE MIR 3 115 -147 21 0 0 0 chr3 203785668 203785689 -23738889 + AT_rich Low_complexity Low_complexity 1 21 0 521 278 56 20 chr3 203785734 203785932 -23738646 + MIR SINE MIR 58 262 0 24 0 0 0 chr3 203786446 203786470 -23738108 + AT_rich Low_complexity Low_complexity 1 24 0 3229 77 13 9 chr3 203786496 203786952 -23737626 - L1PA10 LINE L1 -3 6165 5708 1680 131 61 72 chr3 203787091 203787466 -23737112 + THE1C LTR MaLR 5 375 0 22 0 0 0 chr3 203788442 203788464 -23736114 + AT_rich Low_complexity Low_complexity 1 22 0 323 256 16 70 chr3 203788766 203788836 -23735742 - L1ME4a LINE L1 0 6121 6060 2072 112 7 0 chr3 203788836 203789131 -23735447 + AluSq SINE Alu 1 297 -16 323 256 16 70 chr3 203789131 203789189 -23735389 - L1ME4a LINE L1 -61 6060 6000 225 288 17 0 chr3 203790391 203790450 -23734128 + L1MEc LINE L1 29 88 -6308 328 286 186 38 chr3 203790961 203791000 -23733578 + Charlie2 DNA MER1_type 1 33 -2749 1175 179 44 113 chr3 203791000 203791390 -23733188 + MLT1A1 LTR MaLR 1 363 -2 328 286 186 38 chr3 203791390 203791560 -23733018 + Charlie2 DNA MER1_type 33 241 -2541 308 77 0 0 chr3 203791580 203791619 -23732959 + MER9 LTR ERVK 1 39 -472 1564 116 20 8 chr3 203791719 203791969 -23732609 + MER9 LTR ERVK 259 511 0 300 310 11 0 chr3 203791971 203792058 -23732520 + Charlie2 DNA MER1_type 253 340 -2442 856 38 0 0 chr3 203792067 203792173 -23732405 - LTR12 LTR ERV1 0 714 609 451 324 72 14 chr3 203792175 203792382 -23732196 + Charlie2 DNA MER1_type 370 588 -2194 521 174 0 0 chr3 203793308 203793394 -23731184 + Charlie2a DNA MER1_type 1553 1638 -1224 1665 177 87 23 chr3 203793394 203793784 -23730794 - L1MB8 LINE L1 -2 6176 5762 1491 239 51 36 chr3 203793835 203794361 -23730217 + Charlie2a DNA MER1_type 1622 2155 -707 569 194 145 100 chr3 203794518 203794763 -23729815 - LTR1B LTR ERV1 -60 960 505 21 0 0 0 chr3 203794892 203794913 -23729665 + AT_rich Low_complexity Low_complexity 1 21 0 302 262 121 21 chr3 203794984 203795125 -23729453 - L1ME4a LINE L1 -177 5944 5790 22 0 0 0 chr3 203795361 203795383 -23729195 + AT_rich Low_complexity Low_complexity 1 22 0 363 235 8 15 chr3 203795710 203795842 -23728736 + CT-rich Low_complexity Low_complexity 3 133 0 384 77 0 0 chr3 203796644 203796696 -23727882 + (TA)n Simple_repeat Simple_repeat 2 53 0 43 20 0 0 chr3 203796918 203796968 -23727610 + AT_rich Low_complexity Low_complexity 1 50 0 2294 97 0 0 chr3 203797599 203797897 -23726681 - AluSc SINE Alu -11 298 1 540 260 99 18 chr3 203799732 203799966 -23724612 + MLT1L LTR MaLR 239 573 -42 2019 165 45 30 chr3 203800278 203800816 -23723762 + MLT2A2 LTR ERVL 1 554 0 2692 117 29 7 chr3 203800978 203801397 -23723181 - MSTA LTR MaLR 0 428 1 2258 108 0 3 chr3 203802051 203802357 -23722221 - AluSc SINE Alu -4 305 1 591 90 0 0 chr3 203803009 203803087 -23721491 - AluSc SINE Alu -18 291 214 2252 96 7 3 chr3 203803747 203804048 -23720530 - AluSq SINE Alu -11 302 1 219 346 101 14 chr3 203804176 203804393 -23720185 - L2 LINE L2 -2871 443 208 247 325 33 32 chr3 203804614 203804717 -23719861 - MIR SINE MIR -87 121 18 582 290 24 29 chr3 203805533 203805740 -23718838 - MIR3 SINE MIR 0 208 3 483 275 21 52 chr3 203806089 203806282 -23718296 - L1ME3 LINE L1 0 6162 5976 * 1223 268 45 28 chr3 203806281 203806500 -23718078 - L1ME3 LINE L1 -809 5337 5123 2160 99 3 22 chr3 203806500 203806677 -23717901 - AluSc SINE Alu -2 307 137 2712 22 0 0 chr3 203806677 203806988 -23717590 - AluY SINE Alu 0 311 1 2160 99 3 22 chr3 203806988 203807123 -23717455 - AluSc SINE Alu -172 137 1 1223 268 45 28 chr3 203807123 203807436 -23717142 - L1ME3 LINE L1 -1023 5123 4796 2552 276 82 15 chr3 203807454 203808583 -23715995 - L1ME3 LINE L1 -2646 3500 2296 25 0 0 0 chr3 203808584 203808609 -23715969 + AT_rich Low_complexity Low_complexity 1 25 0 249 223 76 6 chr3 203808609 203808766 -23715812 + (TTAAA)n Simple_repeat Simple_repeat 5 172 0 33 0 0 0 chr3 203808766 203808799 -23715779 + AT_rich Low_complexity Low_complexity 1 33 0 1089 150 23 71 chr3 203808799 203808921 -23715657 - L1MA7 LINE L1 -1 6290 6186 1912 153 45 83 chr3 203808921 203808997 -23715581 - MSTB LTR MaLR 0 426 349 1908 157 10 0 chr3 203808997 203809297 -23715281 + AluJb SINE Alu 9 311 -1 1912 153 45 83 chr3 203809297 203809663 -23714915 - MSTB LTR MaLR -77 349 1 1089 150 23 71 chr3 203809663 203809806 -23714772 - L1MA7 LINE L1 -105 6186 6038 230 137 34 26 chr3 203809806 203809923 -23714655 + (TTATA)n Simple_repeat Simple_repeat 5 122 0 635 157 0 0 chr3 203810212 203810320 -23714258 + AluSp/q SINE Alu 204 311 -2 1614 137 34 27 chr3 203811714 203812007 -23712571 - AluSx SINE Alu -17 295 1 1672 153 44 0 chr3 203812095 203812389 -23712189 - L1PB4 LINE L1 -2 6154 5848 1976 125 10 0 chr3 203812389 203812700 -23711878 + L1PB4 LINE L1 5519 5832 -324 258 363 44 9 chr3 203812771 203812884 -23711694 + MIR3 SINE MIR 83 199 -9 255 31 0 0 chr3 203813416 203813448 -23711130 + (CA)n Simple_repeat Simple_repeat 2 33 0 235 221 52 65 chr3 203813780 203813857 -23710721 - MARNA DNA Mariner -6 580 505 23 33 0 0 chr3 203814034 203814064 -23710514 + AT_rich Low_complexity Low_complexity 1 30 0 2088 123 7 16 chr3 203814323 203814633 -23709945 - AluSx SINE Alu -5 307 1 557 281 57 24 chr3 203814656 203814902 -23709676 - LTR33 LTR ERVL -4 517 264 327 318 41 18 chr3 203815994 203816164 -23708414 - Charlie2 DNA MER1_type -1 2861 2688 706 273 94 57 chr3 203816342 203816885 -23707693 + L1MEc LINE L1 1253 1815 -4581 1012 261 56 14 chr3 203816966 203817562 -23707016 + L1MEc LINE L1 1930 2506 -3709 975 208 0 0 chr3 203817563 203817731 -23706847 - AluJb SINE Alu -14 298 131 888 281 40 17 chr3 203817754 203818103 -23706475 + L1MEc LINE L1 2548 2904 -3311 2114 267 31 14 chr3 203818108 203818697 -23705881 + MER90 LTR ERV1 1 599 -15 366 194 169 8 chr3 203818708 203818832 -23705746 + L1MEc LINE L1 2911 3054 -3161 8243 243 52 42 chr3 203818857 203819821 -23704757 + L1MC2 LINE L1 368 1321 -5243 2006 121 0 4 chr3 203819821 203820132 -23704446 + AluSc SINE Alu 1 310 0 8243 243 52 42 chr3 203820132 203824306 -23700272 + L1MC2 LINE L1 1321 5715 -849 14935 162 17 14 chr3 203824333 203828375 -23696203 + L1MA3 LINE L1 2249 6305 0 3206 204 99 52 chr3 203828387 203829383 -23695195 + L1MC2 LINE L1 5709 6751 -11 22 35 0 0 chr3 203830235 203830264 -23694314 + AT_rich Low_complexity Low_complexity 1 29 0 204 40 0 0 chr3 203831099 203831124 -23693454 + (A)n Simple_repeat Simple_repeat 1 25 0 351 182 40 71 chr3 203831561 203831660 -23692918 + MLT1F LTR MaLR 1 96 -446 * 593 231 43 24 chr3 203831658 203831824 -23692754 + MLT1H1 LTR MaLR 406 555 0 2101 110 7 0 chr3 203831942 203832234 -23692344 + AluSg SINE Alu 1 294 -16 489 290 32 21 chr3 203832261 203832447 -23692131 - MIR SINE MIR -2 260 73 228 298 96 48 chr3 203832646 203832750 -23691828 - MIR3 SINE MIR -49 159 51 21 0 0 0 chr3 203833080 203833101 -23691477 + AT_rich Low_complexity Low_complexity 1 21 0 226 292 45 11 chr3 203833726 203833815 -23690763 - MIR3 SINE MIR -4 204 113 390 316 60 30 chr3 203834369 203834494 -23690084 - MIR SINE MIR -15 247 127 497 138 0 0 chr3 203834494 203834574 -23690004 - MADE1 DNA Mariner 0 80 1 390 316 60 30 chr3 203834574 203834682 -23689896 - MIR SINE MIR -135 127 7 232 123 35 35 chr3 203834828 203834885 -23689693 + A-rich Low_complexity Low_complexity 1 57 0 645 220 116 11 chr3 203834943 203835220 -23689358 + L1M4 LINE L1 2226 2531 -3615 326 312 64 0 chr3 203835225 203835366 -23689212 + L1M4 LINE L1 2821 2970 -3176 256 287 59 42 chr3 203835468 203835757 -23688821 + L1M4 LINE L1 3064 3357 -2789 412 218 40 29 chr3 203835859 203836033 -23688545 + (TA)n Simple_repeat Simple_repeat 2 177 0 191 185 0 19 chr3 203836110 203836164 -23688414 + (TA)n Simple_repeat Simple_repeat 2 54 0 628 268 35 41 chr3 203836167 203836510 -23688068 + L1M4 LINE L1 3788 4128 -2018 330 252 48 10 chr3 203836934 203837037 -23687541 + MIR3 SINE MIR 50 156 -52 293 83 14 111 chr3 203837624 203837696 -23686882 - MLT2C2 LTR ERVL 0 464 423 2028 156 21 64 chr3 203837816 203838239 -23686339 - MLT2D LTR ERVL -9 405 1 448 338 14 0 chr3 203838939 203839081 -23685497 - MIR SINE MIR -8 254 111 406 178 8 6 chr3 203839083 203839341 -23685237 + AluJo SINE Alu 5 315 0 344 295 16 33 chr3 203839343 203839465 -23685113 - MIR SINE MIR -137 125 6 22 56 0 0 chr3 203839901 203839937 -23684641 + AT_rich Low_complexity Low_complexity 1 36 0 554 331 31 34 chr3 203843614 203843907 -23680671 - MLT1I LTR MaLR -104 305 14 332 260 60 10 chr3 203844794 203844894 -23679684 + MIR SINE MIR 3 107 -155 652 297 66 0 chr3 203844956 203845138 -23679440 + MER91A DNA MER1_type 1 194 -2 2118 80 0 4 chr3 203845313 203845588 -23678990 + AluY SINE Alu 36 309 -2 522 333 47 10 chr3 203846362 203846554 -23678024 - MIR SINE MIR -44 218 20 554 175 9 0 chr3 203846570 203846684 -23677894 + CT-rich Low_complexity Low_complexity 4 118 0 21016 184 26 15 chr3 203846888 203847175 -23677403 - L1PA13 LINE L1 0 7601 7319 1954 121 86 40 chr3 203847175 203847523 -23677055 - THE1B LTR MaLR 0 364 1 21016 184 26 15 chr3 203847523 203853671 -23670907 - L1PA13 LINE L1 -282 7319 5 237 349 18 18 chr3 203853887 203853996 -23670582 - MIR SINE MIR -64 144 36 211 398 0 9 chr3 203854381 203854489 -23670089 - MIR SINE MIR -78 130 24 263 297 97 36 chr3 203855091 203855256 -23669322 + MIR SINE MIR 88 262 0 216 300 0 17 chr3 203858583 203858643 -23665935 + C-rich Low_complexity Low_complexity 5 63 0 225 0 0 0 chr3 203859816 203859841 -23664737 + (CAGGG)n Simple_repeat Simple_repeat 1 25 0 381 319 44 9 chr3 203860362 203860475 -23664103 + MIR SINE MIR 21 137 -125 239 337 32 11 chr3 203861375 203861470 -23663108 + MER5A DNA MER1_type 1 97 -92 2237 286 111 18 chr3 203861804 203862992 -23661586 - L2 LINE L2 0 3313 2009 26 30 0 0 chr3 203863856 203863889 -23660689 + AT_rich Low_complexity Low_complexity 1 33 0 474 301 36 0 chr3 203865326 203865545 -23659033 + L1MC4 LINE L1 7690 7916 -126 709 231 0 0 chr3 203865705 203865848 -23658730 + AluSq/x SINE Alu 1 143 -169 188 210 52 5 chr3 203865848 203865915 -23658663 - MIR SINE MIR -73 135 63 21 89 0 0 chr3 203866431 203866487 -23658091 + AT_rich Low_complexity Low_complexity 1 56 0 465 103 0 0 chr3 203867112 203867180 -23657398 + (TA)n Simple_repeat Simple_repeat 2 69 0 1715 75 0 0 chr3 203867444 203867658 -23656920 - AluY SINE Alu -10 301 88 1474 226 79 34 chr3 203871965 203872372 -23652206 + MLT1D LTR MaLR 81 505 0 310 268 24 57 chr3 203872382 203872505 -23652073 - MIR SINE MIR -114 148 30 3643 98 8 0 chr3 203872972 203873495 -23651083 - L1MA1 LINE L1 0 6302 5776 690 237 75 85 chr3 203873513 203874009 -23650569 - L2 LINE L2 -89 3224 2668 652 170 27 0 chr3 203874597 203874709 -23649869 - AluJb SINE Alu -187 125 11 342 67 0 0 chr3 203875783 203875828 -23648750 + (TG)n Simple_repeat Simple_repeat 2 46 0 786 249 15 113 chr3 203876147 203876412 -23648166 + MIR SINE MIR 10 248 -14 4328 189 39 75 chr3 203876500 203876761 -23647817 + L1MD1 LINE L1 4881 5150 -1092 1945 151 3 0 chr3 203876761 203877046 -23647532 + AluSx SINE Alu 1 286 -26 4328 189 39 75 chr3 203877046 203877155 -23647423 + L1MD1 LINE L1 5150 5261 -981 1186 185 64 70 chr3 203877155 203877453 -23647125 + AluJb SINE Alu 2 297 -5 4328 189 39 75 chr3 203877453 203878497 -23646081 + L1MD1 LINE L1 5261 6237 -5 2019 76 45 59 chr3 203878540 203878854 -23645724 + AluSp SINE Alu 1 310 0 270 245 167 10 chr3 203878949 203879051 -23645527 - L3b LINE CR1 -188 1395 1278 1720 154 3 10 chr3 203880019 203880317 -23644261 + L1P3 LINE L1 7 302 -5573 1937 147 6 10 chr3 203880631 203881254 -23643324 + L1PA8 LINE L1 7 6498 0 668 299 82 13 chr3 203882647 203882878 -23641700 + MIR SINE MIR 14 260 -2 198 0 0 0 chr3 203884841 203884863 -23639715 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 357 43 0 0 chr3 203885770 203885817 -23638761 + (GA)n Simple_repeat Simple_repeat 2 48 0 273 386 6 28 chr3 203886958 203887134 -23637444 + MER5A DNA MER1_type 7 178 -11 2212 110 0 0 chr3 203887139 203887438 -23637140 - AluSx SINE Alu -9 303 5 617 229 153 6 chr3 203887635 203887792 -23636786 - MER5A DNA MER1_type -1 188 9 2191 103 18 29 chr3 203887845 203888186 -23636392 + MER44D DNA MER2_type 1 607 -2 394 286 125 6 chr3 203888611 203888779 -23635799 - MIR SINE MIR -73 189 2 546 158 56 177 chr3 203888836 203889102 -23635476 + MER106A DNA MER1_type 1 234 -2 211 278 14 14 chr3 203889332 203889404 -23635174 + GA-rich Low_complexity Low_complexity 3 74 0 213 65 0 0 chr3 203889836 203889867 -23634711 + (A)n Simple_repeat Simple_repeat 1 31 0 2862 224 88 21 chr3 203890208 203890923 -23633655 - MER4-int LTR ERV1 -504 4367 3605 315 235 118 0 chr3 203890935 203891020 -23633558 - MER4-int LTR ERV1 -847 4089 3995 286 188 0 78 chr3 203891014 203891078 -23633500 - MER4-int LTR ERV1 -1073 5258 5200 * 1226 185 104 109 chr3 203891072 203892058 -23632520 - MER4-int LTR ERV1 -937 5248 3438 * 1770 206 96 77 chr3 203892045 203893681 -23630897 - MER4-int LTR ERV1 -2576 4022 1270 890 215 5 12 chr3 203893702 203893897 -23630681 + MLT1D LTR MaLR 291 388 -2 591 349 110 8 chr3 203893925 203894289 -23630289 - L2 LINE L2 -1170 2144 1744 199 242 16 0 chr3 203894327 203894389 -23630189 - L2 LINE L2 -927 2387 2325 611 283 112 0 chr3 203894995 203895200 -23629378 + MIR SINE MIR 1 228 -34 198 0 0 0 chr3 203895807 203895829 -23628749 + (CA)n Simple_repeat Simple_repeat 1 22 0 253 133 44 44 chr3 203896074 203896164 -23628414 + CT-rich Low_complexity Low_complexity 2 91 0 258 32 0 0 chr3 203896187 203896218 -23628360 + (CA)n Simple_repeat Simple_repeat 1 31 0 353 319 0 22 chr3 203896220 203896355 -23628223 + Charlie8 DNA MER1_type 124 255 -2162 327 272 99 19 chr3 203897361 203897574 -23627004 - L1ME4a LINE L1 -252 5869 5640 296 286 81 25 chr3 203898345 203898506 -23626072 - HAL1b LINE L1 -833 515 379 194 152 0 22 chr3 203898646 203898692 -23625886 + T-rich Low_complexity Low_complexity 2 46 0 282 165 13 63 chr3 203898745 203898824 -23625754 - L1MA9 LINE L1 -22 6290 6216 260 245 0 10 chr3 203898828 203898930 -23625648 + (TA)n Simple_repeat Simple_repeat 1 101 0 934 173 121 8 chr3 203898986 203899234 -23625344 - L1MA9 LINE L1 -81 6231 5956 1228 99 6 0 chr3 203999240 203999402 -23525176 - AluSg/x SINE Alu -18 292 130 261 0 0 0 chr3 203999485 203999514 -23525064 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 766 187 76 53 chr3 203999557 203999619 -23524959 - AluJo SINE Alu -137 175 116 507 60 0 0 chr3 203999619 203999686 -23524892 + (CA)n Simple_repeat Simple_repeat 2 68 0 766 187 76 53 chr3 203999686 203999794 -23524784 - AluJo SINE Alu -196 116 1 331 313 7 67 chr3 204001127 204001277 -23523301 - MIR SINE MIR -56 206 66 21 36 0 0 chr3 204001815 204001843 -23522735 + AT_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 204001870 204001893 -23522685 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3 204002599 204002627 -23521951 + AT_rich Low_complexity Low_complexity 1 28 0 272 321 136 27 chr3 204002701 204002736 -23521842 - MIR3 SINE MIR -3 205 175 2193 99 7 0 chr3 204002736 204003030 -23521548 - AluSp SINE Alu -17 296 1 272 321 136 27 chr3 204003030 204003178 -23521400 - MIR3 SINE MIR -33 175 2 2159 122 0 0 chr3 204003699 204003995 -23520583 - AluSx SINE Alu -16 296 1 275 317 25 123 chr3 204004571 204004855 -23519723 - L2 LINE L2 0 3272 3017 236 360 14 58 chr3 204005008 204005147 -23519431 - MIR3 SINE MIR -61 147 15 196 373 42 8 chr3 204005384 204005502 -23519076 - MIR SINE MIR -133 129 8 1133 203 5 5 chr3 204006199 204006411 -23518167 - AluJo SINE Alu -15 297 86 485 345 63 13 chr3 204006689 204006927 -23517651 - MIR SINE MIR 0 262 13 2142 104 0 22 chr3 204008624 204008940 -23515638 - AluSx SINE Alu -3 309 1 21 36 0 0 chr3 204009260 204009288 -23515290 + AT_rich Low_complexity Low_complexity 1 28 0 2093 121 13 3 chr3 204009396 204009703 -23514875 + AluSg SINE Alu 1 310 0 453 319 25 19 chr3 204010602 204010762 -23513816 + MIR3 SINE MIR 44 204 -4 143 23 0 0 chr3 204011034 204011205 -23513373 + AT_rich Low_complexity Low_complexity 1 171 0 3951 121 48 91 chr3 204011311 204012132 -23512446 + LTR1 LTR ERV1 1 785 0 277 286 54 101 chr3 204012630 204012798 -23511780 - MLT1J1 LTR MaLR -286 160 1 223 281 150 42 chr3 204013824 204013991 -23510587 - L2 LINE L2 -8 3305 3121 1843 269 101 15 chr3 204014037 204014702 -23509876 + L1ME2 LINE L1 5433 6154 -10 187 351 78 0 chr3 204014711 204014788 -23509790 - L2 LINE L2 -76 3196 3114 299 315 124 45 chr3 204015227 204015541 -23509037 + L2 LINE L2 1609 1947 -1367 491 245 0 0 chr3 204016348 204016446 -23508132 - MER5A DNA MER1_type -78 111 14 1906 133 27 58 chr3 204016601 204016977 -23507601 + THE1B LTR MaLR 1 364 0 3526 182 57 101 chr3 204017916 204018870 -23505708 - MER21A LTR ERV1 -19 912 1 1444 220 84 27 chr3 204019655 204020096 -23504482 - MER110A LTR ERV1 0 468 3 315 0 0 0 chr3 204020647 204020682 -23503896 + (TG)n Simple_repeat Simple_repeat 2 36 0 4958 160 14 46 chr3 204021558 204021689 -23502889 - L1MB3 LINE L1 -2 7141 7007 2177 113 0 7 chr3 204021689 204021990 -23502588 - AluSg SINE Alu -11 299 1 4958 160 14 46 chr3 204021990 204022929 -23501649 - L1MB3 LINE L1 -136 7007 6097 1708 224 4 66 chr3 204022929 204023416 -23501162 - L1MB3 LINE L1 -2145 4961 4505 2577 249 55 48 chr3 204023452 204024265 -23500313 - L1MB3 LINE L1 -3263 3843 3037 378 0 0 0 chr3 204024265 204024307 -23500271 + (TG)n Simple_repeat Simple_repeat 1 42 0 2577 249 55 48 chr3 204024307 204026522 -23498056 - L1MB3 LINE L1 -4069 3037 1 267 167 0 0 chr3 204027016 204027070 -23497508 - Alu SINE Alu -3 297 244 709 268 50 36 chr3 204027320 204027540 -23497038 + MER58A DNA MER1_type 1 223 -1 2228 127 0 0 chr3 204027785 204028093 -23496485 + AluSx SINE Alu 3 310 -2 239 324 59 0 chr3 204028430 204028498 -23496080 + MIR SINE MIR 157 228 -34 183 80 0 0 chr3 204030236 204030261 -23494317 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 192 77 0 0 chr3 204030407 204030433 -23494145 + (TAAA)n Simple_repeat Simple_repeat 3 28 0 369 252 156 7 chr3 204030700 204030835 -23493743 - L2 LINE L2 -947 2367 2213 453 326 69 23 chr3 204030882 204031100 -23493478 - MIR SINE MIR -1 261 34 291 333 111 11 chr3 204031144 204031324 -23493254 - MIR SINE MIR -16 246 49 220 261 87 14 chr3 204031622 204031691 -23492887 + MIR3 SINE MIR 113 186 -22 2134 269 111 3 chr3 204033351 204034055 -23490523 + L2 LINE L2 1829 2608 -706 1625 207 36 0 chr3 204034758 204035063 -23489515 - MER7A DNA MER2_type -32 314 1 2030 121 0 48 chr3 204036345 204036660 -23487918 - AluSx SINE Alu -12 300 1 313 238 49 49 chr3 204036909 204037031 -23487547 - MER66A LTR ERV1 -39 439 318 573 283 23 17 chr3 204037034 204037211 -23487367 - MER66A LTR ERV1 -291 187 10 29 28 0 0 chr3 204037287 204037323 -23487255 + AT_rich Low_complexity Low_complexity 1 36 0 21 57 0 0 chr3 204037825 204037860 -23486718 + AT_rich Low_complexity Low_complexity 1 35 0 492 301 87 0 chr3 204039299 204039392 -23485186 - MER58C DNA MER1_type -2207 213 129 366 23 0 0 chr3 204039392 204039435 -23485143 + (TG)n Simple_repeat Simple_repeat 2 44 0 492 301 87 0 chr3 204039435 204039537 -23485041 - MER58C DNA MER1_type -2291 129 1 2090 177 23 25 chr3 204039737 204040297 -23484281 + MLT2A2 LTR ERVL 1 554 0 1447 210 0 20 chr3 204040398 204040698 -23483880 + AluJb SINE Alu 18 311 -1 184 380 8 25 chr3 204040889 204041010 -23483568 + MIR SINE MIR 100 218 -44 230 360 132 15 chr3 204041742 204041878 -23482700 + L2 LINE L2 3121 3272 0 191 355 167 14 chr3 204042105 204042243 -23482335 - L2 LINE L2 -7 3265 3107 2328 71 3 7 chr3 204043395 204043689 -23480889 + AluY SINE Alu 3 295 -16 1786 245 88 29 chr3 204043689 204044248 -23480330 + MLT1E LTR MaLR 2 593 0 198 340 104 38 chr3 204045477 204045583 -23478995 + L2 LINE L2 2966 3078 -194 195 283 164 19 chr3 204046216 204046375 -23478203 - MIR SINE MIR 0 262 81 191 318 93 0 chr3 204047641 204047748 -23476830 - MIR SINE MIR -108 154 38 242 274 27 14 chr3 204049136 204049209 -23475369 + MIR3 SINE MIR 114 187 -21 252 280 80 30 chr3 204049368 204049468 -23475110 - MIR SINE MIR -98 164 60 273 265 24 0 chr3 204049950 204050033 -23474545 - L2 LINE L2 -991 2323 2239 355 295 121 0 chr3 204050989 204051138 -23473440 - MIR SINE MIR -60 202 36 962 185 54 22 chr3 204051154 204051376 -23473202 + MER58 DNA MER1_type 43 271 -2149 2405 81 7 0 chr3 204051593 204051901 -23472677 - AluSg SINE Alu 0 310 1 26 64 0 0 chr3 204052112 204052159 -23472419 + AT_rich Low_complexity Low_complexity 1 47 0 267 343 19 0 chr3 204052178 204052283 -23472295 - L2 LINE L2 -490 2824 2718 189 367 92 18 chr3 204054522 204054631 -23469947 - MIR SINE MIR -118 144 28 202 265 15 44 chr3 204055782 204055850 -23468728 + L2 LINE L2 2268 2333 -981 757 271 20 15 chr3 204055895 204056098 -23468480 + MIR SINE MIR 21 224 -38 1397 232 79 33 chr3 204057357 204057723 -23466855 - MSTD LTR MaLR -13 383 1 456 324 33 11 chr3 204057909 204058091 -23466487 - MIR SINE MIR -57 205 20 245 254 32 0 chr3 204058697 204058760 -23465818 + MIR SINE MIR 83 147 -61 420 214 39 45 chr3 204059886 204060040 -23464538 - L1MEc LINE L1 -3420 2795 2643 2111 151 31 0 chr3 204060249 204060600 -23463978 - L1PA15 LINE L1 0 6165 5804 4940 241 28 36 chr3 204060600 204063347 -23461231 - L1PA13 LINE L1 -3831 2966 1 561 30 0 0 chr3 204063393 204063460 -23461118 + (TA)n Simple_repeat Simple_repeat 1 67 0 857 230 88 53 chr3 204063485 204064076 -23460502 - L1MEc LINE L1 -3612 2603 2020 808 334 50 42 chr3 204064148 204064861 -23459717 - L1MEc LINE L1 -5341 864 146 300 338 78 24 chr3 204065092 204065849 -23458729 - L1MEc LINE L1 -4585 1811 1014 953 183 50 5 chr3 204066064 204066266 -23458312 - L1PA16 LINE L1 -11 6155 5945 21 0 0 0 chr3 204067570 204067591 -23456987 + AT_rich Low_complexity Low_complexity 1 21 0 841 246 69 9 chr3 204067721 204067953 -23456625 + MLT1F1 LTR MaLR 322 567 0 24 0 0 0 chr3 204067973 204067997 -23456581 + AT_rich Low_complexity Low_complexity 1 24 0 435 349 74 18 chr3 204069170 204069399 -23455179 + MIR SINE MIR 2 243 -19 1753 151 14 3 chr3 204069644 204069936 -23454642 + AluSq SINE Alu 2 296 -17 185 62 83 0 chr3 204070005 204070053 -23454525 + (TAGA)n Simple_repeat Simple_repeat 1 52 0 201 214 60 60 chr3 204070057 204070141 -23454437 - MIR3 SINE MIR 0 208 125 9665 206 120 21 chr3 204070698 204072892 -23451686 + L1PA13 LINE L1 16 2410 -4387 663 152 9 0 chr3 204072889 204072994 -23451584 + L1P LINE L1 4507 4612 -1534 * 940 95 47 7 chr3 204072996 204073144 -23451434 + L1PA13 LINE L1 6006 6159 -4 180 89 0 71 chr3 204073260 204073316 -23451262 + (TAAAAA)n Simple_repeat Simple_repeat 6 57 0 396 305 63 36 chr3 204073655 204073878 -23450700 - L1ME LINE L1 -348 5773 5545 3585 204 41 31 chr3 204073886 204073982 -23450596 + MER45B DNA AcHobo 225 319 -1262 1372 228 115 14 chr3 204073982 204074338 -23450240 - MSTD LTR MaLR 0 396 5 3585 204 41 31 chr3 204074338 204075049 -23449529 + MER45B DNA AcHobo 319 1040 0 2930 199 66 15 chr3 204075049 204075718 -23448860 - Charlie1a DNA MER1_type -751 704 2 1048 291 115 9 chr3 204075793 204076236 -23448342 + Charlie7 DNA MER1_type 120 609 -2003 33 43 0 0 chr3 204076298 204076345 -23448233 + AT_rich Low_complexity Low_complexity 1 47 0 2776 190 2 32 chr3 204076432 204076785 -23447793 + MLT2B2 LTR ERVL 1 334 -181 5499 70 110 0 chr3 204076785 204077529 -23447049 - LTR12 LTR ERV1 0 826 1 2776 190 2 32 chr3 204077529 204077706 -23446872 + MLT2B2 LTR ERVL 334 515 0 313 279 80 42 chr3 204077721 204078033 -23446545 + L1M4 LINE L1 2301 2624 -3522 24 32 0 0 chr3 204081271 204081302 -23443276 + AT_rich Low_complexity Low_complexity 1 31 0 211 398 48 37 chr3 204082170 204082715 -23441863 - L2 LINE L2 -927 2387 1837 216 0 0 0 chr3 204083039 204083063 -23441515 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 307 292 71 18 chr3 204083939 204084052 -23440526 - L2 LINE L2 0 3272 3154 6445 205 63 7 chr3 204084210 204087134 -23437444 + L1MA7 LINE L1 2210 5460 -746 1613 146 12 43 chr3 204087140 204087463 -23437115 + L1MA7 LINE L1 5979 6291 0 2418 63 13 0 chr3 204087491 204087790 -23436788 + AluSp SINE Alu 3 305 -8 29506 118 7 23 chr3 204088767 204095240 -23429338 + L1PA7 LINE L1 8 6465 -4 705 191 24 0 chr3 204096241 204096409 -23428169 + CT-rich Low_complexity Low_complexity 2 173 0 1754 168 10 92 chr3 204097472 204097865 -23426713 - MSTD LTR MaLR -11 385 25 6921 206 10 4 chr3 204097866 204098334 -23426244 - L1 LINE L1 -1265 4881 4417 189 0 0 0 chr3 204098334 204098355 -23426223 + (TTTTA)n Simple_repeat Simple_repeat 2 22 0 6921 206 10 4 chr3 204098355 204099356 -23425222 - L1 LINE L1 -1729 4417 3403 585 317 105 41 chr3 204099668 204100031 -23424547 - L2 LINE L2 -1 3312 2927 249 300 0 43 chr3 204100162 204100232 -23424346 + L2 LINE L2 2716 2782 -532 209 184 0 0 chr3 204100488 204100526 -23424052 + (CAA)n Simple_repeat Simple_repeat 2 39 0 248 336 154 9 chr3 204100624 204100954 -23423624 + L2 LINE L2 1885 2262 -1052 650 289 91 12 chr3 204100967 204101209 -23423369 - MIR SINE MIR 0 262 2 189 74 0 0 chr3 204101706 204101733 -23422845 + (CAAAAA)n Simple_repeat Simple_repeat 2 28 0 411 327 117 18 chr3 204101755 204101978 -23422600 + MIR SINE MIR 11 255 -7 2062 162 60 31 chr3 204102164 204102578 -23422000 + MSTB LTR MaLR 1 426 0 298 323 161 0 chr3 204104719 204104843 -23419735 - MIR3 SINE MIR -25 183 40 319 325 12 31 chr3 204105452 204105612 -23418966 - MIR SINE MIR -59 203 47 1613 124 22 0 chr3 204105644 204105911 -23418667 - L1MA2 LINE L1 0 6304 6032 2499 29 7 19 chr3 204106974 204107281 -23417297 + AluY SINE Alu 1 303 -8 230 326 0 33 chr3 204107644 204107736 -23416842 - L2 LINE L2 0 3313 3225 403 330 196 9 chr3 204107899 204108129 -23416449 + L3 LINE CR1 1245 1517 -60 334 314 117 60 chr3 204109095 204109531 -23415047 + L1 LINE L1 4890 5350 -796 255 206 63 0 chr3 204109833 204109896 -23414682 + L1MA8 LINE L1 6225 6291 0 21 0 0 0 chr3 204109896 204109917 -23414661 + AT_rich Low_complexity Low_complexity 1 21 0 221 300 17 0 chr3 204110108 204110168 -23414410 + L2 LINE L2 3208 3268 -4 22 56 0 0 chr3 204111059 204111095 -23413483 + AT_rich Low_complexity Low_complexity 1 36 0 268 325 32 32 chr3 204111201 204111324 -23413254 - MIR SINE MIR -110 152 30 2021 85 3 11 chr3 204114034 204114380 -23410198 - AluSc SINE Alu 0 344 1 849 261 28 23 chr3 204114400 204114618 -23409960 - MIR SINE MIR -23 239 21 225 0 0 0 chr3 204116773 204116798 -23407780 + (TA)n Simple_repeat Simple_repeat 1 25 0 318 309 88 15 chr3 204116874 204117010 -23407568 + L2 LINE L2 3165 3310 -3 228 247 93 73 chr3 204117765 204117915 -23406663 + MIR SINE MIR 26 178 -84 3704 113 32 14 chr3 204118589 204119181 -23405397 + L1MA4 LINE L1 5692 6294 -6 324 308 41 51 chr3 204119337 204119532 -23405046 + L1ME4a LINE L1 5189 5381 -765 456 289 152 30 chr3 204119538 204120037 -23404541 + L1ME4a LINE L1 5387 5946 -175 1752 231 52 54 chr3 204121448 204121933 -23402645 + MLT2B2 LTR ERVL 32 515 0 824 250 54 24 chr3 204122146 204123061 -23401517 + L1ME3A LINE L1 5178 6165 -5 271 290 0 14 chr3 204123956 204124025 -23400553 - MER5B DNA MER1_type -57 121 54 595 251 76 15 chr3 204124025 204124288 -23400290 - L1MCc LINE L1 -5111 2011 1733 1151 250 18 3 chr3 204124299 204124583 -23399995 - L1MEc LINE L1 -6070 326 39 2155 266 82 39 chr3 204124720 204126236 -23398342 - L1ME3A LINE L1 -12 6953 5362 1363 252 93 15 chr3 204126229 204126702 -23397876 - L1ME3A LINE L1 -2299 4642 4133 * 1650 231 88 86 chr3 204126747 204127693 -23396885 - L1ME3A LINE L1 -2892 4049 3102 198 0 0 0 chr3 204127743 204127765 -23396813 + (CAAAAA)n Simple_repeat Simple_repeat 2 23 0 1608 197 3 66 chr3 204127905 204128021 -23396557 + MLT1A1 LTR MaLR 23 145 -220 2405 158 16 12 chr3 204128021 204128444 -23396134 + MSTB LTR MaLR 1 425 -1 1608 197 3 66 chr3 204128444 204128693 -23395885 + MLT1A1 LTR MaLR 145 365 0 3299 276 93 48 chr3 204128756 204129913 -23394665 - L1MCc LINE L1 -4888 1535 720 195 42 0 0 chr3 204129913 204129937 -23394641 + (TTCTCC)n Simple_repeat Simple_repeat 4 27 0 3299 276 93 48 chr3 204129937 204130666 -23393912 - L1MCc LINE L1 -5703 720 25 21 71 0 0 chr3 204130827 204130869 -23393709 + AT_rich Low_complexity Low_complexity 1 42 0 27 29 0 0 chr3 204131164 204131198 -23393380 + AT_rich Low_complexity Low_complexity 1 34 0 1203 201 59 7 chr3 204131529 204131817 -23392761 - L1MA4 LINE L1 -3 6297 5995 456 256 11 0 chr3 204132316 204132406 -23392172 + MER58A DNA MER1_type 2 92 -15 300 294 268 18 chr3 204132418 204132646 -23391932 + L2 LINE L2 2682 2966 -348 977 212 57 5 chr3 204132803 204133015 -23391563 + MER58 DNA MER1_type 1 223 -2197 237 319 0 0 chr3 204133084 204133153 -23391425 + L2 LINE L2 3243 3311 -2 185 128 21 0 chr3 204134517 204134564 -23390014 + A-rich Low_complexity Low_complexity 2 49 0 341 294 81 22 chr3 204134876 204135012 -23389566 - MIR SINE MIR -91 171 28 2454 63 0 0 chr3 204135089 204135391 -23389187 - AluY SINE Alu -9 302 1 213 350 22 56 chr3 204137275 204137455 -23387123 + MER5B DNA MER1_type 4 177 -1 220 179 224 60 chr3 204137604 204137671 -23386907 - L3 LINE CR1 -538 1039 962 261 293 93 33 chr3 204137949 204138099 -23386479 - L3 LINE CR1 -796 781 623 236 252 39 97 chr3 204138481 204138584 -23385994 - L2 LINE L2 -43 3229 3133 523 364 89 16 chr3 204138712 204139163 -23385415 + L3 LINE CR1 1083 1566 -11 264 231 0 15 chr3 204139490 204139555 -23385023 + MARNA DNA Mariner 130 193 -393 * 628 234 34 17 chr3 204139499 204139674 -23384904 - MARNA DNA Mariner -140 446 269 427 322 122 19 chr3 204140054 204140259 -23384319 + MIR SINE MIR 8 233 -29 231 241 76 13 chr3 204140625 204140704 -23383874 - MARNA DNA Mariner -234 352 269 210 250 0 0 chr3 204141168 204141216 -23383362 + L2 LINE L2 3266 3313 0 191 316 48 65 chr3 204141278 204141446 -23383132 - L2 LINE L2 -221 3051 2887 210 222 0 0 chr3 204141752 204141806 -23382772 + (ATG)n Simple_repeat Simple_repeat 1 54 0 473 255 55 28 chr3 204141818 204141963 -23382615 - MIR SINE MIR -8 254 106 558 219 12 44 chr3 204141982 204142142 -23382436 + L1MD3 LINE L1 7542 7696 -299 588 235 76 0 chr3 204142335 204142467 -23382111 + FRAM SINE Alu 1 142 -34 226 0 0 56 chr3 204142499 204142535 -23382043 + (CAAAA)n Simple_repeat Simple_repeat 3 36 0 1075 256 88 12 chr3 204142622 204143032 -23381546 + L1MD3 LINE L1 6817 7257 -738 577 278 21 0 chr3 204143052 204143196 -23381382 + MLT1F1 LTR MaLR 1 147 -420 2455 194 60 9 chr3 204143196 204143732 -23380846 + L1MD3 LINE L1 7424 7986 -9 1605 194 13 3 chr3 204143759 204144069 -23380509 + AluSq SINE Alu 1 313 0 331 238 65 48 chr3 204144069 204144237 -23380341 + L1MC4 LINE L1 5329 5499 -2309 726 306 87 48 chr3 204144352 204145375 -23379203 + L1MC4 LINE L1 5753 6907 -986 5254 170 26 5 chr3 204145382 204146728 -23377850 - L1MC1 LINE L1 -160 6173 4809 199 289 13 40 chr3 204151163 204151239 -23373339 + MIR SINE MIR 119 192 -70 1419 157 18 14 chr3 204151986 204152272 -23372306 - L1MA4 LINE L1 -6 7356 7070 3401 110 0 4 chr3 204152275 204152747 -23371831 - MER9 LTR ERVK 0 511 42 635 152 9 0 chr3 204152748 204152853 -23371725 + L1P LINE L1 4685 4790 -1356 271 109 0 156 chr3 204152941 204153005 -23371573 + L1P LINE L1 4821 4874 -1272 * 7231 162 41 58 chr3 204153003 204154122 -23370456 - L1MA4 LINE L1 -743 6465 5439 684 94 0 0 chr3 204154122 204154218 -23370360 - AluSc SINE Alu -16 293 198 7231 162 41 58 chr3 204154218 204154797 -23369781 - L1MA4 LINE L1 -1769 5439 4852 2496 168 25 10 chr3 204154795 204155277 -23369301 - L1MA4 LINE L1 -4165 3044 2556 * 1348 302 73 37 chr3 204155275 204156027 -23368551 - L1MA4 LINE L1 -5529 1680 902 * 280 309 114 20 chr3 204156285 204156434 -23368144 - MIR SINE MIR -24 238 76 426 215 76 47 chr3 204156435 204156607 -23367971 - MER104 DNA MER2_type 0 180 4 562 156 0 0 chr3 204157257 204157347 -23367231 - 5S rRNA rRNA -31 90 1 216 301 96 0 chr3 204157741 204157824 -23366754 + L2 LINE L2 3149 3239 -33 660 248 105 0 chr3 204157836 204157989 -23366589 + AluJo SINE Alu 1 169 -143 182 191 21 21 chr3 204158449 204158496 -23366082 + L2 LINE L2 3267 3313 0 274 337 89 45 chr3 204158673 204158875 -23365703 - L2 LINE L2 -130 3142 2932 22 0 0 0 chr3 204159358 204159380 -23365198 + AT_rich Low_complexity Low_complexity 1 22 0 30 0 0 0 chr3 204159917 204159947 -23364631 + AT_rich Low_complexity Low_complexity 1 30 0 2250 135 34 57 chr3 204160255 204160454 -23364124 + MSTB LTR MaLR 1 203 -223 2265 112 0 0 chr3 204160454 204160758 -23363820 + AluSx SINE Alu 1 304 -8 2250 135 34 57 chr3 204160758 204160994 -23363584 + MSTB LTR MaLR 203 426 0 456 325 53 7 chr3 204161722 204161873 -23362705 - L2 LINE L2 -219 3053 2896 410 177 0 0 chr3 204162020 204162099 -23362479 + Charlie5 DNA MER1_type 2506 2584 -28 264 59 0 0 chr3 204163015 204163049 -23361529 + (TATAA)n Simple_repeat Simple_repeat 3 36 0 372 329 95 22 chr3 204163864 204164086 -23360492 - MIR SINE MIR -5 257 20 536 196 0 0 chr3 204164322 204164414 -23360164 + MLT1B LTR MaLR 1 92 -298 181 281 146 24 chr3 204164531 204164613 -23359965 - MIR3 SINE MIR -7 201 110 818 208 62 0 chr3 204165011 204165189 -23359389 + MER5A DNA MER1_type 1 189 0 404 336 81 9 chr3 204165351 204165574 -23359004 - MIR SINE MIR -15 247 9 694 157 84 22 chr3 204165581 204165759 -23358819 + MER53 DNA DNA 1 189 0 195 219 0 0 chr3 204165986 204166027 -23358551 + MIR3 SINE MIR 165 205 -3 22 35 0 0 chr3 204166109 204166138 -23358440 + AT_rich Low_complexity Low_complexity 1 29 0 2077 113 0 0 chr3 204166567 204166842 -23357736 + AluSg SINE Alu 1 275 -35 224 214 0 0 chr3 204166938 204166980 -23357598 - L2 LINE L2 -6 3307 3266 297 151 0 0 chr3 204167099 204167152 -23357426 + (TG)n Simple_repeat Simple_repeat 1 53 0 979 245 116 46 chr3 204168390 204168761 -23355817 + LTR40a LTR ERVL 5 401 -118 504 203 15 45 chr3 204168926 204169059 -23355519 + LTR33 LTR ERVL 100 228 -293 2441 75 3 0 chr3 204169171 204169477 -23355101 + AluY SINE Alu 1 307 -4 209 261 62 15 chr3 204170026 204170091 -23354487 - MIR3 SINE MIR -7 201 134 279 380 34 10 chr3 204170317 204170525 -23354053 - L2 LINE L2 -236 3036 2824 581 168 32 0 chr3 204171357 204171452 -23353126 + MER45A DNA AcHobo 70 167 -11 25 31 0 0 chr3 204171640 204171672 -23352906 + AT_rich Low_complexity Low_complexity 1 32 0 369 294 132 15 chr3 204171992 204172051 -23352527 - MIR SINE MIR -33 229 178 1965 171 17 8 chr3 204172051 204172413 -23352165 + MLT1A1 LTR MaLR 1 365 0 369 294 132 15 chr3 204172413 204172557 -23352021 - MIR SINE MIR -84 178 2 587 271 140 38 chr3 204173182 204173245 -23351333 + MIR SINE MIR 1 56 -206 542 214 9 9 chr3 204173245 204173357 -23351221 - MER81 DNA DNA 0 114 3 587 271 140 38 chr3 204173357 204173529 -23351049 + MIR SINE MIR 56 260 -2 223 231 108 15 chr3 204175472 204175537 -23349041 - MIR3 SINE MIR -14 194 124 407 306 56 0 chr3 204176743 204176851 -23347727 - L2 LINE L2 -1 3271 3158 672 257 101 37 chr3 204177421 204177519 -23347059 - MIR SINE MIR -3 259 169 2078 147 19 30 chr3 204177519 204177887 -23346691 - THE1B LTR MaLR 0 364 1 672 257 101 37 chr3 204177887 204178006 -23346572 - MIR SINE MIR -93 169 28 180 0 0 0 chr3 204178373 204178393 -23346185 + (TTTA)n Simple_repeat Simple_repeat 1 20 0 282 258 34 11 chr3 204180170 204180259 -23344319 + L2 LINE L2 3221 3311 -2 284 356 89 25 chr3 204180457 204180693 -23343885 - L2 LINE L2 -287 2985 2738 777 258 217 25 chr3 204180738 204181180 -23343398 - LTR67 LTR ERVL -29 528 2 249 378 53 13 chr3 204181196 204181347 -23343231 - L2 LINE L2 -593 2721 2565 232 244 256 0 chr3 204181367 204181449 -23343129 + L2 LINE L2 3190 3292 -21 1728 212 180 45 chr3 204181456 204182117 -23342461 - L1ME1 LINE L1 -1 6165 5416 482 220 45 15 chr3 204182143 204182291 -23342287 - L1ME1 LINE L1 -709 5461 5325 183 313 144 56 chr3 204183385 204183545 -23341033 - MIR3 SINE MIR -33 175 2 1848 153 61 9 chr3 204183975 204184301 -23340277 - MER61A LTR ERV1 0 343 1 27 49 0 0 chr3 204184375 204184416 -23340162 + AT_rich Low_complexity Low_complexity 1 41 0 197 259 19 0 chr3 204185569 204185623 -23338955 - L2 LINE L2 -2 3311 3257 510 264 87 101 chr3 204185696 204186131 -23338447 - L1ME4a LINE L1 -21 6100 5672 577 181 79 16 chr3 204186232 204186359 -23338219 - FAM SINE Alu -7 42 1 755 289 124 52 chr3 204186575 204187398 -23337180 - HAL1 LINE L1 -1564 943 62 392 305 16 112 chr3 204187597 204187784 -23336794 + MIR3 SINE MIR 11 179 -29 4239 125 7 0 chr3 204187905 204188513 -23336065 - LTR9 LTR ERV1 0 612 1 265 304 120 32 chr3 204188533 204188691 -23335887 + MIR SINE MIR 8 179 -83 2568 101 3 3 chr3 204188857 204189212 -23335366 + THE1A LTR MaLR 1 355 0 11788 83 13 3 chr3 204189212 204190777 -23333801 + THE1A-int LTR MaLR 1 1580 0 2665 85 8 0 chr3 204190777 204191129 -23333449 + THE1A LTR MaLR 1 355 0 22 35 0 0 chr3 204192219 204192248 -23332330 + AT_rich Low_complexity Low_complexity 1 29 0 470 291 27 14 chr3 204193445 204193593 -23330985 + MIR SINE MIR 103 252 -10 288 130 5 83 chr3 204194891 204195083 -23329495 + (TA)n Simple_repeat Simple_repeat 1 177 0 185 81 0 27 chr3 204195151 204195188 -23329390 + (TA)n Simple_repeat Simple_repeat 2 37 0 21 0 0 0 chr3 204195246 204195267 -23329311 + AT_rich Low_complexity Low_complexity 1 21 0 350 251 117 47 chr3 204195964 204196135 -23328443 + MIR SINE MIR 20 206 -56 1260 164 52 0 chr3 204196768 204197018 -23327560 + L1MB3 LINE L1 5919 6181 -2 1842 104 12 0 chr3 204197046 204197286 -23327292 - AluSc SINE Alu -17 292 50 25 0 0 0 chr3 204197293 204197318 -23327260 + AT_rich Low_complexity Low_complexity 1 25 0 6344 86 19 3 chr3 204197318 204198389 -23326189 - L1PA8 LINE L1 -14 6158 5075 1131 78 6 0 chr3 204198389 204198555 -23326023 + L1PA8 LINE L1 4918 5084 -1062 290 188 0 0 chr3 204198683 204198731 -23325847 + AluJ/FRAM SINE Alu 219 266 -36 311 362 35 20 chr3 204198905 204199107 -23325471 - MIR SINE MIR -22 240 37 1226 138 36 13 chr3 204200630 204200854 -23323724 + MER58B DNA MER1_type 105 333 -8 602 274 118 24 chr3 204200862 204201074 -23323504 + MIR SINE MIR 31 262 0 511 326 67 13 chr3 204201932 204202156 -23322422 - MIR SINE MIR -21 241 6 356 276 145 31 chr3 204202523 204202753 -23321825 - MIR SINE MIR -7 255 3 215 314 78 20 chr3 204203954 204204056 -23320522 - MIR SINE MIR -147 115 8 218 299 234 16 chr3 204204540 204204724 -23319854 - MIR SINE MIR -18 244 21 403 369 66 14 chr3 204206501 204206833 -23317745 - L2 LINE L2 -208 3064 2717 2007 234 30 57 chr3 204206890 204207596 -23316982 - L1ME3A LINE L1 -43 6127 5441 216 311 94 19 chr3 204207604 204207710 -23316868 - L2 LINE L2 -633 2681 2568 1853 112 8 4 chr3 204209801 204210061 -23314517 + AluSg SINE Alu 34 294 -16 1281 198 64 85 chr3 204213485 204213874 -23310704 + MLT1B LTR MaLR 10 390 0 339 332 126 65 chr3 204215383 204215781 -23308797 + L2 LINE L2 2850 3271 -1 46 45 0 0 chr3 204215802 204215869 -23308709 + AT_rich Low_complexity Low_complexity 1 67 0 2089 161 8 25 chr3 204217229 204217626 -23306952 - MLT1B LTR MaLR 0 390 1 184 348 78 17 chr3 204217655 204217770 -23306808 + L2 LINE L2 2624 2745 -569 928 238 67 5 chr3 204218233 204218456 -23306122 - MLT1C LTR MaLR -3 464 228 261 185 148 56 chr3 204218521 204218629 -23305949 - MLT1C LTR MaLR -349 118 1 344 221 52 13 chr3 204218642 204218719 -23305859 + L2 LINE L2 3234 3313 0 380 256 113 33 chr3 204219668 204219840 -23304738 - MIR3 SINE MIR 0 208 14 319 207 281 0 chr3 204219982 204220064 -23304514 - MER63 DNA MER1_type -276 786 682 693 305 26 9 chr3 204220253 204220479 -23304099 - MIR SINE MIR -13 249 20 301 344 150 6 chr3 204220536 204220696 -23303882 - MIR SINE MIR 0 262 80 207 0 0 0 chr3 204223519 204223542 -23301036 + (T)n Simple_repeat Simple_repeat 1 23 0 2092 135 140 8 chr3 204223579 204223957 -23300621 + MSTA LTR MaLR 1 428 0 8503 185 24 21 chr3 204223957 204225602 -23298976 + MSTA-int LTR MaLR 1 1650 -1 2162 139 128 8 chr3 204225602 204225984 -23298594 + MSTA LTR MaLR 1 428 0 225 267 0 0 chr3 204226033 204226078 -23298500 + (CA)n Simple_repeat Simple_repeat 2 46 0 202 283 0 17 chr3 204226155 204226215 -23298363 + L2 LINE L2 3133 3191 -81 286 314 102 64 chr3 204227335 204227618 -23296960 - L2 LINE L2 -1 3271 2978 630 261 61 21 chr3 204227915 204228103 -23296475 - MIR3 SINE MIR -11 197 41 26 0 0 0 chr3 204228444 204228470 -23296108 + AT_rich Low_complexity Low_complexity 1 26 0 2175 71 0 49 chr3 204228973 204229281 -23295297 + AluY SINE Alu 1 293 -18 207 372 93 23 chr3 204230381 204230467 -23294111 + L2 LINE L2 3134 3225 -47 2107 101 7 0 chr3 204230536 204230814 -23293764 - AluSg SINE Alu -14 296 17 1374 171 30 85 chr3 204231302 204231598 -23292980 + MER2 DNA MER2_type 2 276 -68 1742 141 16 69 chr3 204231598 204231903 -23292675 - AluJb SINE Alu -23 289 1 1374 171 30 85 chr3 204231903 204231969 -23292609 + MER2 DNA MER2_type 276 344 0 221 389 43 22 chr3 204232119 204232258 -23292320 - MIR SINE MIR -111 151 10 202 325 24 12 chr3 204233503 204233586 -23290992 - MIR3 SINE MIR -54 154 71 1979 160 6 6 chr3 204234714 204235026 -23289552 + AluJb SINE Alu 1 312 0 400 337 25 15 chr3 204235728 204235930 -23288648 + MER20B DNA MER1_type 1 204 -579 240 224 0 0 chr3 204236159 204236208 -23288370 - MIR SINE MIR -77 131 83 202 297 119 69 chr3 204236311 204236412 -23288166 - L2 LINE L2 -33 3239 3134 1187 168 22 44 chr3 204236567 204236793 -23287785 - MER58A DNA MER1_type -3 221 1 700 316 61 14 chr3 204237218 204237563 -23287015 + LTR16A LTR ERVL 1 361 -89 2399 171 32 26 chr3 204237582 204237771 -23286807 + MLT1C LTR MaLR 4 190 -277 249 33 0 0 chr3 204237771 204237801 -23286777 + (CA)n Simple_repeat Simple_repeat 2 31 0 2399 171 32 26 chr3 204237801 204238003 -23286575 + MLT1C LTR MaLR 190 401 -66 1946 136 3 31 chr3 204238003 204238320 -23286258 - AluSp SINE Alu -5 308 1 2399 171 32 26 chr3 204238320 204238388 -23286190 + MLT1C LTR MaLR 401 467 0 223 309 64 11 chr3 204239348 204239442 -23285136 + MIR3 SINE MIR 103 201 -7 333 340 51 46 chr3 204240460 204240657 -23283921 - MIR3 SINE MIR -7 201 4 1116 60 20 7 chr3 204240687 204240837 -23283741 - L1M1 LINE L1 -600 5705 5554 2568 128 33 19 chr3 204240978 204241400 -23283178 + MSTA LTR MaLR 1 428 0 292 335 170 24 chr3 204241431 204241643 -23282935 + MIR SINE MIR 20 262 0 21 36 0 0 chr3 204242494 204242522 -23282056 + AT_rich Low_complexity Low_complexity 1 28 0 1813 140 4 0 chr3 204242553 204242832 -23281746 - L1PA16 LINE L1 -17 6149 5870 884 112 0 0 chr3 204242844 204242960 -23281618 - AluSq/x SINE Alu -196 116 1 3727 119 12 15 chr3 204242960 204243335 -23281243 - L1PA16 LINE L1 -327 5839 5464 1812 138 28 28 chr3 204243335 204243646 -23280932 + AluJb SINE Alu 1 311 0 3727 119 12 15 chr3 204243646 204243857 -23280721 - L1PA16 LINE L1 -702 5464 5254 1388 189 7 0 chr3 204243857 204244143 -23280435 + L1PA16 LINE L1 4955 5242 -904 662 305 69 22 chr3 204244587 204244833 -23279745 - MIR SINE MIR -9 253 2 369 0 0 0 chr3 204245246 204245287 -23279291 + (TG)n Simple_repeat Simple_repeat 2 42 0 410 372 65 47 chr3 204246069 204246410 -23278168 - L2 LINE L2 0 3272 2926 410 329 29 0 chr3 204247527 204247664 -23276914 - MIR SINE MIR -80 182 42 264 230 95 95 chr3 204249145 204249271 -23275307 - MIR SINE MIR -53 209 84 2273 100 7 0 chr3 204249392 204249693 -23274885 + AluSq SINE Alu 1 303 -10 259 344 134 61 chr3 204249817 204250064 -23274514 - L2 LINE L2 -20 3252 2988 274 325 0 0 chr3 204251001 204251078 -23273500 - L2 LINE L2 -3 3269 3193 340 267 88 20 chr3 204251567 204251914 -23272664 - L1MDa LINE L1 -2194 4021 3563 309 258 50 57 chr3 204252081 204252240 -23272338 - L1MDa LINE L1 -2974 3241 3084 180 152 0 0 chr3 204252508 204252541 -23272037 + (TTA)n Simple_repeat Simple_repeat 2 34 0 229 288 96 20 chr3 204252774 204252972 -23271606 - L1MDa LINE L1 -3682 2533 2321 356 321 74 33 chr3 204252977 204253220 -23271358 - L1MDa LINE L1 -3905 2310 2096 297 0 0 0 chr3 204254097 204254130 -23270448 + (CA)n Simple_repeat Simple_repeat 2 34 0 479 295 35 29 chr3 204255016 204255189 -23269389 + MER91B DNA MER1_type 1 174 -16 583 301 50 25 chr3 204256717 204257039 -23267539 + L1ME4a LINE L1 5525 5854 -267 266 244 0 99 chr3 204257101 204257232 -23267346 + L1ME4a LINE L1 5998 6115 -6 29 47 0 0 chr3 204258217 204258260 -23266318 + AT_rich Low_complexity Low_complexity 1 43 0 270 0 0 0 chr3 204258669 204258699 -23265879 + (TA)n Simple_repeat Simple_repeat 2 31 0 6237 127 25 45 chr3 204258738 204259895 -23264683 - L1MC1 LINE L1 -1 6332 5198 26 0 0 0 chr3 204259905 204259931 -23264647 + AT_rich Low_complexity Low_complexity 1 26 0 200 306 16 0 chr3 204261607 204261669 -23262909 + CT-rich Low_complexity Low_complexity 1 63 0 450 128 39 20 chr3 204261961 204262063 -23262515 + CT-rich Low_complexity Low_complexity 5 108 0 2374 73 0 3 chr3 204262162 204262483 -23262095 - AluSp SINE Alu 0 320 1 21 0 0 0 chr3 204262899 204262920 -23261658 + AT_rich Low_complexity Low_complexity 1 21 0 473 121 12 0 chr3 204263176 204263259 -23261319 + (GA)n Simple_repeat Simple_repeat 1 84 0 270 354 0 10 chr3 204263245 204263344 -23261234 + GA-rich Low_complexity Low_complexity 2 99 0 * 22 0 0 0 chr3 204265962 204265984 -23258594 + AT_rich Low_complexity Low_complexity 1 22 0 380 244 103 6 chr3 204267370 204267526 -23257052 + L1ME4a LINE L1 5945 6115 -6 311 96 19 0 chr3 204267792 204267844 -23256734 + (TG)n Simple_repeat Simple_repeat 1 53 0 2383 287 85 20 chr3 204267870 204269045 -23255533 + L2 LINE L2 2068 3312 -1 21 57 0 0 chr3 204269613 204269648 -23254930 + AT_rich Low_complexity Low_complexity 1 35 0 1580 179 111 54 chr3 204269841 204270283 -23254295 + LTR10A LTR ERV1 82 548 -61 412 312 52 6 chr3 204270297 204270470 -23254108 + MIR SINE MIR 78 258 -4 364 272 44 18 chr3 204270483 204270597 -23253981 - MIR SINE MIR -71 191 75 256 328 57 8 chr3 204270943 204271065 -23253513 + MIR SINE MIR 113 240 -22 435 311 49 49 chr3 204271984 204272167 -23252411 + L2 LINE L2 3090 3272 0 844 325 79 27 chr3 204274682 204275031 -23249547 - L2 LINE L2 -423 2891 2509 1679 151 113 46 chr3 204275031 204275402 -23249176 + MSTD LTR MaLR 1 396 0 844 325 79 27 chr3 204275402 204275535 -23249043 - L2 LINE L2 -805 2509 2384 2198 109 0 3 chr3 204275654 204275948 -23248630 - AluY SINE Alu -18 293 1 2606 74 6 3 chr3 204275974 204276324 -23248254 - L1PA7 LINE L1 -13 6141 5791 180 0 0 0 chr3 204276991 204277011 -23247567 + (T)n Simple_repeat Simple_repeat 1 20 0 308 255 84 56 chr3 204277448 204277681 -23246897 - L1MC/D LINE L1 -705 5463 5254 279 230 34 27 chr3 204277944 204278042 -23246536 - L1P LINE L1 -1162 4984 4882 * 1476 111 17 181 chr3 204278037 204278451 -23246127 - L1P LINE L1 -2589 3557 3212 261 180 0 0 chr3 204278611 204278661 -23245917 + (TATG)n Simple_repeat Simple_repeat 2 51 0 294 350 139 24 chr3 204278755 204279209 -23245369 + L2 LINE L2 2148 2653 -661 268 345 76 17 chr3 204279214 204279333 -23245245 + MER5A DNA MER1_type 7 132 -57 222 370 72 12 chr3 204279361 204279610 -23244968 + L2 LINE L2 2650 2913 -401 2109 125 0 49 chr3 204280375 204280702 -23243876 - AluSx SINE Alu -1 311 1 2525 54 0 25 chr3 204281244 204281558 -23243020 + AluY SINE Alu 1 306 -5 591 246 56 60 chr3 204281736 204281968 -23242610 + MIR SINE MIR 20 250 -12 277 270 102 36 chr3 204282362 204282499 -23242079 - MIR SINE MIR -66 196 51 470 299 63 30 chr3 204282755 204282952 -23241626 - MIR SINE MIR -19 243 30 1791 142 13 26 chr3 204284613 204284915 -23239663 - AluSx SINE Alu -14 298 1 684 239 66 44 chr3 204285076 204285302 -23239276 - MIR SINE MIR -2 260 30 189 263 0 0 chr3 204285575 204285613 -23238965 + MER5A DNA MER1_type 37 74 -115 592 260 73 6 chr3 204286417 204286594 -23237984 + MIR SINE MIR 17 205 -57 2210 109 7 7 chr3 204287476 204287780 -23236798 - AluSq SINE Alu -9 304 1 216 257 286 21 chr3 204288177 204288317 -23236261 - MER5B DNA MER1_type 0 178 2 210 329 37 0 chr3 204288892 204288974 -23235604 - MIR SINE MIR -119 143 59 187 310 0 35 chr3 204289496 204289554 -23235024 + MIR3 SINE MIR 104 159 -49 194 183 133 33 chr3 204289717 204289777 -23234801 + MIR3 SINE MIR 121 186 -22 314 198 52 9 chr3 204290999 204291115 -23233463 + (TA)n Simple_repeat Simple_repeat 1 121 0 39 38 0 0 chr3 204291139 204291192 -23233386 + AT_rich Low_complexity Low_complexity 1 53 0 494 287 96 20 chr3 204291773 204292011 -23232567 - MIR SINE MIR 0 262 9 507 301 23 23 chr3 204292499 204292675 -23231903 + MIR3 SINE MIR 31 206 -2 180 262 79 103 chr3 204293832 204293958 -23230620 + L3 LINE CR1 1050 1172 -405 440 359 23 14 chr3 204294085 204294305 -23230273 + L3 LINE CR1 1105 1326 -251 304 222 16 0 chr3 204294322 204294385 -23230193 + MIR SINE MIR 178 241 -21 2158 102 7 7 chr3 204295073 204295367 -23229211 + AluSg SINE Alu 1 294 -16 364 291 70 25 chr3 204295613 204295771 -23228807 - MIR SINE MIR -6 256 92 445 310 60 7 chr3 204295772 204296056 -23228522 + L1ME LINE L1 5522 5820 -301 21 110 0 0 chr3 204296089 204296180 -23228398 + AT_rich Low_complexity Low_complexity 1 91 0 188 261 22 0 chr3 204297146 204297192 -23227386 + MIR3 SINE MIR 144 190 -18 213 196 0 0 chr3 204297485 204297531 -23227047 + (CA)n Simple_repeat Simple_repeat 2 47 0 22 0 0 0 chr3 204297714 204297736 -23226842 + AT_rich Low_complexity Low_complexity 1 22 0 461 346 60 8 chr3 204298850 204299084 -23225494 + MIR SINE MIR 17 262 0 1300 6 30 0 chr3 204299819 204299988 -23224590 + (TAGA)n Simple_repeat Simple_repeat 3 176 0 581 269 120 16 chr3 204300024 204300266 -23224312 - MLT1K LTR MaLR 0 588 322 225 0 0 0 chr3 204301591 204301616 -23222962 + (T)n Simple_repeat Simple_repeat 1 25 0 186 318 38 38 chr3 204301953 204302085 -23222493 - MIR SINE MIR -54 208 77 243 139 0 0 chr3 204302361 204302404 -23222174 - MER65B LTR ERV1 -488 43 1 351 0 0 0 chr3 204302523 204302562 -23222016 + (TA)n Simple_repeat Simple_repeat 1 39 0 3837 62 2 0 chr3 204302601 204303086 -23221492 - L1PA8 LINE L1 -10 6162 5677 2036 129 24 0 chr3 204304097 204304384 -23220194 - AluSx SINE Alu -18 294 1 1784 168 7 30 chr3 204304541 204304845 -23219733 + AluJo SINE Alu 9 305 -7 303 316 26 66 chr3 204305806 204305861 -23218717 - L2 LINE L2 -50 3263 3207 2244 122 0 0 chr3 204305861 204306164 -23218414 + AluSx SINE Alu 1 303 -9 303 316 26 66 chr3 204306164 204306336 -23218242 - L2 LINE L2 -106 3207 3045 29292 112 11 60 chr3 204307130 204313591 -23210987 + L1PA7 LINE L1 13 6153 -1 273 317 20 20 chr3 204313924 204314025 -23210553 + MIR SINE MIR 46 146 -116 470 238 28 35 chr3 204314708 204314851 -23209727 + MIR SINE MIR 75 216 -46 207 0 0 0 chr3 204315488 204315511 -23209067 + (TCCC)n Simple_repeat Simple_repeat 3 25 0 485 202 77 0 chr3 204315534 204315638 -23208940 + MIR SINE MIR 151 262 0 330 209 66 44 chr3 204317207 204317298 -23207280 + L3 LINE CR1 1468 1560 -17 2493 77 3 0 chr3 204317602 204317912 -23206666 - AluSx SINE Alu -1 311 1 2109 81 0 71 chr3 204318493 204318801 -23205777 - AluSq SINE Alu -15 298 13 2952 36 0 3 chr3 204318807 204319165 -23205413 - L1PA4 LINE L1 -2 6153 5797 295 263 36 15 chr3 204319631 204319768 -23204810 + (TA)n Simple_repeat Simple_repeat 2 141 0 276 316 147 0 chr3 204319814 204320004 -23204574 + MIR SINE MIR 29 246 -16 1324 192 0 8 chr3 204320536 204320776 -23203802 - AluJo SINE Alu -2 310 73 708 308 34 0 chr3 204321610 204321818 -23202760 - MIR SINE MIR 0 262 48 362 279 169 32 chr3 204323797 204323951 -23200627 + MER5A DNA MER1_type 2 176 -13 239 344 124 32 chr3 204324734 204324984 -23199594 + L2 LINE L2 2544 2816 -498 2211 259 86 31 chr3 204325130 204325829 -23198749 - L2 LINE L2 -392 2922 2186 289 272 77 77 chr3 204326259 204326428 -23198150 - MIR SINE MIR -52 210 42 2612 83 11 16 chr3 204326496 204326871 -23197707 + THE1C LTR MaLR 1 373 -2 182 316 72 58 chr3 204327448 204327587 -23196991 - MIR3 SINE MIR -66 142 2 210 208 0 0 chr3 204329475 204329523 -23195055 + (TTCA)n Simple_repeat Simple_repeat 2 49 0 330 286 101 8 chr3 204329912 204330031 -23194547 - MER5B DNA MER1_type 0 178 49 203 322 60 47 chr3 204330071 204330220 -23194358 - L2 LINE L2 -553 2761 2611 2788 160 19 44 chr3 204330666 204330950 -23193628 - L1MB2 LINE L1 -11 6160 5897 2146 119 0 17 chr3 204330950 204331243 -23193335 - AluSx SINE Alu -22 290 3 2788 160 19 44 chr3 204331243 204331547 -23193031 - L1MB2 LINE L1 -274 5897 5587 1849 46 25 0 chr3 204331783 204332023 -23192555 - L1PA7 LINE L1 -414 5740 5495 2973 79 2 2 chr3 204332023 204332424 -23192154 + L1PA7 LINE L1 5750 6154 0 553 244 122 0 chr3 204333820 204333984 -23190594 - MER5A DNA MER1_type -4 185 2 195 186 0 0 chr3 204334539 204334582 -23189996 + GA-rich Low_complexity Low_complexity 3 45 0 190 336 93 0 chr3 204336019 204336126 -23188452 - MIR3 SINE MIR -5 203 87 1636 168 125 12 chr3 204336144 204336472 -23188106 + MLT1A1 LTR MaLR 1 365 0 2683 234 90 77 chr3 204336477 204337688 -23186890 + MLT1A1-int LTR MaLR 5 1231 -140 240 191 59 0 chr3 204337687 204337755 -23186823 + MLT1A1-int LTR MaLR 1664 1735 0 * 1863 160 0 79 chr3 204337764 204338157 -23186421 + MLT1A1 LTR MaLR 4 365 0 276 100 0 0 chr3 204338686 204338726 -23185852 + (TG)n Simple_repeat Simple_repeat 1 40 0 6806 137 47 5 chr3 204339457 204340710 -23183868 - L1MA1 LINE L1 0 7721 6320 1691 187 7 3 chr3 204340710 204341004 -23183574 - AluJb SINE Alu -17 295 1 6806 137 47 5 chr3 204341004 204342017 -23182561 - L1MA1 LINE L1 -1401 6320 5352 10865 196 48 32 chr3 204342018 204342489 -23182089 - L1MA1 LINE L1 -2466 5099 4637 2240 89 0 3 chr3 204342489 204342799 -23181779 + AluY SINE Alu 1 309 0 10865 196 48 32 chr3 204342799 204344182 -23180396 - L1MA1 LINE L1 -2928 4637 3278 1582 159 4 0 chr3 204344182 204344427 -23180151 + AluSq SINE Alu 1 246 -67 10865 196 48 32 chr3 204344427 204345370 -23179208 - L1MA1 LINE L1 -4287 3278 2352 2172 119 73 15 chr3 204345370 204345419 -23179159 - THE1B LTR MaLR -1 363 318 864 77 0 0 chr3 204345419 204345536 -23179042 + (TA)n Simple_repeat Simple_repeat 1 117 0 2172 119 73 15 chr3 204345536 204345829 -23178749 - THE1B LTR MaLR -46 318 1 10865 196 48 32 chr3 204345829 204347933 -23176645 - L1MA1 LINE L1 -5213 2352 16 21 0 0 0 chr3 204348384 204348405 -23176173 + AT_rich Low_complexity Low_complexity 1 21 0 1912 83 105 4 chr3 204348455 204348731 -23175847 + AluSc SINE Alu 3 306 -3 417 257 44 88 chr3 204348732 204348784 -23175794 - HAL1b LINE L1 -48 1300 1247 2255 105 0 7 chr3 204348784 204349088 -23175490 + AluY SINE Alu 1 302 -9 417 257 44 88 chr3 204349088 204349261 -23175317 - HAL1b LINE L1 -101 1247 1085 352 316 221 5 chr3 204350013 204350203 -23174375 - MIR SINE MIR -14 248 18 482 277 46 8 chr3 204350241 204350371 -23174207 - L2 LINE L2 -1 3271 3137 398 324 28 0 chr3 204351133 204351275 -23173303 - MIR SINE MIR 0 262 117 23 0 0 0 chr3 204351506 204351529 -23173049 + AT_rich Low_complexity Low_complexity 1 23 0 1482 225 61 6 chr3 204351554 204351900 -23172678 - MLT1A1 LTR MaLR 0 365 1 327 419 17 13 chr3 204352157 204352391 -23172187 - L2 LINE L2 -527 2787 2553 26 0 0 0 chr3 204352905 204352931 -23171647 + AT_rich Low_complexity Low_complexity 1 26 0 289 235 0 15 chr3 204352936 204353004 -23171574 - MIR SINE MIR -98 164 98 744 268 81 10 chr3 204353089 204353298 -23171280 + MIR SINE MIR 16 239 -23 332 208 104 104 chr3 204353304 204353477 -23171101 + L2 LINE L2 3141 3313 0 302 311 80 14 chr3 204353575 204353716 -23170862 - MIR SINE MIR -62 146 34 248 332 185 9 chr3 204354044 204354255 -23170323 - L2 LINE L2 -810 2504 2257 180 0 0 0 chr3 204354772 204354792 -23169786 + (TAAAA)n Simple_repeat Simple_repeat 4 23 0 180 125 0 0 chr3 204355371 204355403 -23169175 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 22 0 0 0 chr3 204355418 204355440 -23169138 + AT_rich Low_complexity Low_complexity 1 22 0 243 88 0 0 chr3 204355756 204355790 -23168788 + (T)n Simple_repeat Simple_repeat 1 34 0 289 336 28 9 chr3 204356831 204356938 -23167640 + MIR SINE MIR 35 143 -119 700 283 58 14 chr3 204357371 204357594 -23166984 + MIR SINE MIR 28 260 -2 2195 152 11 13 chr3 204357598 204357973 -23166605 - THE1C LTR MaLR -1 374 1 196 135 19 19 chr3 204358049 204358101 -23166477 + (TA)n Simple_repeat Simple_repeat 1 52 0 190 326 58 23 chr3 204360794 204360880 -23163698 - L2 LINE L2 -16 3256 3168 201 213 0 0 chr3 204362739 204362786 -23161792 + (TGGA)n Simple_repeat Simple_repeat 3 49 0 2574 119 14 0 chr3 204363491 204363861 -23160717 - THE1C LTR MaLR 0 375 1 10129 103 30 45 chr3 204363861 204365465 -23159113 - THE1C-int LTR MaLR 0 1580 1 2741 96 3 5 chr3 204365465 204365841 -23158737 - THE1C LTR MaLR 0 375 1 330 26 0 0 chr3 204366583 204366622 -23157956 + (CA)n Simple_repeat Simple_repeat 1 39 0 1141 158 5 0 chr3 204367389 204367585 -23156993 + L1PB1 LINE L1 5955 6151 0 3580 128 85 18 chr3 204367918 204368541 -23156037 - L1PA13 LINE L1 -3 6160 5496 186 362 121 32 chr3 204368992 204369528 -23155050 + L2 LINE L2 2288 2871 -443 657 315 50 5 chr3 204370362 204370584 -23153994 - MIR SINE MIR -30 232 1 455 315 51 17 chr3 204370585 204370763 -23153815 + MIR SINE MIR 25 208 -54 196 296 23 0 chr3 204371172 204371216 -23153362 + L2 LINE L2 3211 3255 -17 2167 126 128 8 chr3 204371361 204371743 -23152835 - MSTA LTR MaLR 0 428 1 3188 252 51 14 chr3 204371872 204373044 -23151534 - L1M4 LINE L1 -991 5155 3940 253 348 27 9 chr3 204373502 204373614 -23150964 + MIR SINE MIR 50 163 -99 2029 234 33 11 chr3 204374219 204374771 -23149807 + L1MD2 LINE L1 5776 6339 -20 282 305 69 15 chr3 204375333 204375464 -23149114 - L2 LINE L2 -209 3063 2926 384 267 99 43 chr3 204375939 204376100 -23148478 + MIR SINE MIR 27 196 -66 2187 115 7 0 chr3 204376223 204376527 -23148051 - AluSp SINE Alu -7 306 1 614 280 23 9 chr3 204376570 204376788 -23147790 - LTR16C LTR ERVL -9 482 262 440 156 13 0 chr3 204378339 204378416 -23146162 + MER72 LTR ERV1 617 694 -28 449 278 155 5 chr3 204378645 204378832 -23145746 + MIR SINE MIR 33 247 -15 276 323 10 30 chr3 204378881 204378980 -23145598 - L2 LINE L2 0 3272 3176 28 29 0 0 chr3 204379121 204379156 -23145422 + AT_rich Low_complexity Low_complexity 1 35 0 1554 197 3 18 chr3 204379435 204379719 -23144859 + AluJo SINE Alu 3 282 -30 216 0 0 0 chr3 204379722 204379746 -23144832 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 338 315 27 6 chr3 204380018 204380278 -23144300 - L1ME LINE L1 -638 5524 5259 251 221 39 29 chr3 204380546 204380644 -23143934 - L1P LINE L1 -1162 4984 4882 * 6406 113 32 4 chr3 204380639 204381701 -23142877 - L1P LINE L1 -2589 3557 2466 11644 80 6 13 chr3 204381711 204383435 -23141143 + L1PA7 LINE L1 3614 5326 -820 1682 67 27 0 chr3 204383435 204383652 -23140926 + L1PA7 LINE L1 5925 6154 0 25 31 0 0 chr3 204383719 204383751 -23140827 + AT_rich Low_complexity Low_complexity 1 32 0 2062 131 0 3 chr3 204383842 204384140 -23140438 - AluSq SINE Alu -16 297 1 335 314 114 34 chr3 204384191 204385130 -23139448 - L1ME LINE L1 -1538 4608 3595 467 347 65 8 chr3 204385231 204385479 -23139099 - L1ME LINE L1 -2701 3445 3184 369 308 70 0 chr3 204385489 204385716 -23138862 + L1ME LINE L1 2923 3165 -2981 604 299 73 6 chr3 204385986 204386163 -23138415 + MIR SINE MIR 4 192 -70 226 272 141 0 chr3 204386175 204386267 -23138311 + MIR SINE MIR 150 254 -8 504 59 0 0 chr3 204386267 204386335 -23138243 + (TC)n Simple_repeat Simple_repeat 2 69 0 414 250 10 10 chr3 204587535 204587639 -22936939 + MLT1G LTR MaLR 37 140 -450 2281 95 3 3 chr3 204587639 204587934 -22936644 + AluSx SINE Alu 1 295 -17 26 30 0 0 chr3 204588214 204588247 -22936331 + AT_rich Low_complexity Low_complexity 1 33 0 203 233 33 0 chr3 204588389 204588449 -22936129 + A-rich Low_complexity Low_complexity 3 64 0 1381 132 203 8 chr3 204588619 204588870 -22935708 - AluSg1 SINE Alu -5 304 5 266 143 0 0 chr3 204589078 204589120 -22935458 - 5S rRNA rRNA -78 43 2 2251 114 0 0 chr3 204590523 204590821 -22933757 - AluSx SINE Alu -14 298 1 2154 87 7 42 chr3 204590825 204591135 -22933443 - AluSx SINE Alu -13 299 1 1086 106 0 7 chr3 204591135 204591277 -22933301 - AluSq/x SINE Alu -172 141 1 409 298 44 13 chr3 204591573 204591731 -22932847 + L2 LINE L2 2921 3083 -230 3277 118 80 39 chr3 204592285 204592566 -22932012 - MER41B LTR ERV1 0 635 367 2143 110 0 7 chr3 204592566 204592866 -22931712 - AluSq SINE Alu -15 298 1 3277 118 80 39 chr3 204592866 204593194 -22931384 - MER41B LTR ERV1 -268 367 1 365 289 215 15 chr3 204593219 204593439 -22931139 - L2 LINE L2 -977 2337 2056 2156 124 0 0 chr3 204593439 204593737 -22930841 + AluSx SINE Alu 1 298 -14 365 289 215 15 chr3 204593737 204593776 -22930802 - L2 LINE L2 -1258 2056 2026 402 217 30 49 chr3 204593789 204594056 -22930522 + MER21B LTR ERV1 17 243 -620 495 181 101 25 chr3 204594154 204594389 -22930189 + MER21B LTR ERV1 447 841 -22 276 256 196 71 chr3 204594440 204594585 -22929993 - MER5A DNA MER1_type 0 189 19 2538 171 30 45 chr3 204594585 204595124 -22929454 - LTR26B LTR ERV1 0 531 1 276 256 196 71 chr3 204595124 204595146 -22929432 - MER5A DNA MER1_type -170 19 1 2180 215 55 37 chr3 204595487 204595915 -22928663 - MLT1G LTR MaLR -12 578 136 2338 85 0 7 chr3 204595915 204596222 -22928356 - AluSx SINE Alu -7 305 1 2180 215 55 37 chr3 204596222 204596361 -22928217 - MLT1G LTR MaLR -454 136 1 2387 74 0 7 chr3 204596891 204597189 -22927389 - AluSg SINE Alu -14 296 1 2162 109 0 59 chr3 204597189 204597509 -22927069 - AluSx SINE Alu -11 301 1 2123 117 10 0 chr3 204597694 204597985 -22926593 - AluSx SINE Alu -18 294 1 319 209 30 0 chr3 204598044 204598111 -22926467 - AluJ/FLAM SINE Alu -233 69 1 1445 175 129 0 chr3 204598634 204598897 -22925681 + AluJb SINE Alu 1 297 -15 1705 163 14 46 chr3 204599086 204599308 -22925270 - L1PA16 LINE L1 -18 6148 5939 2204 110 0 3 chr3 204599308 204599607 -22924971 - AluSx SINE Alu -14 298 1 1705 163 14 46 chr3 204599607 204599734 -22924844 - L1PA16 LINE L1 -227 5939 5810 704 179 0 45 chr3 204600469 204600625 -22923953 - AluSq SINE Alu -42 271 123 1158 134 4 97 chr3 204600810 204600874 -22923704 + L1MA2 LINE L1 6057 6125 -179 1749 146 68 4 chr3 204600874 204601155 -22923423 - AluSx SINE Alu -13 299 1 1158 134 4 97 chr3 204601155 204601264 -22923314 + L1MA2 LINE L1 6125 6199 -105 1528 197 27 17 chr3 204601264 204601558 -22923020 - AluJb SINE Alu -15 297 1 1158 134 4 97 chr3 204601558 204601652 -22922926 + L1MA2 LINE L1 6199 6300 -4 26 0 0 0 chr3 204601730 204601756 -22922822 + AT_rich Low_complexity Low_complexity 1 26 0 22 56 0 0 chr3 204602817 204602853 -22921725 + AT_rich Low_complexity Low_complexity 1 36 0 402 182 0 0 chr3 204603272 204603338 -22921240 - AluJ/FLAM SINE Alu -246 66 1 1092 236 51 47 chr3 204603341 204603790 -22920788 - L1ME3A LINE L1 -73 6097 5647 659 265 36 5 chr3 204603808 204604004 -22920574 + MER20 DNA MER1_type 18 219 0 327 296 0 26 chr3 204604009 204604124 -22920454 - L1ME3A LINE L1 -523 5647 5536 23 0 0 0 chr3 204604225 204604248 -22920330 + AT_rich Low_complexity Low_complexity 1 23 0 2128 114 0 0 chr3 204604705 204604994 -22919584 - AluSg SINE Alu -20 290 2 25 0 0 0 chr3 204605387 204605412 -22919166 + AT_rich Low_complexity Low_complexity 1 25 0 2207 96 0 4 chr3 204605412 204605693 -22918885 + AluSg SINE Alu 1 280 -30 34 0 0 0 chr3 204605704 204605738 -22918840 + AT_rich Low_complexity Low_complexity 1 34 0 22 0 0 0 chr3 204606305 204606327 -22918251 + AT_rich Low_complexity Low_complexity 1 22 0 743 142 0 25 chr3 204606985 204607105 -22917473 - FRAM SINE Alu -19 157 41 351 298 44 83 chr3 204607385 204607566 -22917012 - MER5B DNA MER1_type -3 175 2 220 204 0 0 chr3 204608010 204608054 -22916524 + (CATATA)n Simple_repeat Simple_repeat 5 48 0 2214 91 0 47 chr3 204608159 204608479 -22916099 - AluSc SINE Alu -4 305 1 1002 230 43 69 chr3 204608995 204609299 -22915279 + AluJo SINE Alu 3 298 -4 320 291 65 13 chr3 204609510 204609740 -22914838 + L1MC4 LINE L1 7682 7923 -119 345 53 96 0 chr3 204609804 204609898 -22914680 + (TA)n Simple_repeat Simple_repeat 1 103 0 26 30 0 0 chr3 204610117 204610150 -22914428 + AT_rich Low_complexity Low_complexity 1 33 0 361 214 103 35 chr3 204610160 204610305 -22914273 - MER103 DNA DNA 0 166 12 23 33 0 0 chr3 204610586 204610616 -22913962 + AT_rich Low_complexity Low_complexity 1 30 0 26 0 0 49 chr3 204611421 204611441 -22913137 + AT_rich Low_complexity Low_complexity 1 20 -19 2422 76 0 0 chr3 204611441 204611742 -22912836 - AluY SINE Alu -10 301 1 26 0 0 49 chr3 204611742 204611762 -22912816 + AT_rich Low_complexity Low_complexity 20 39 0 1389 173 0 5 chr3 204611949 204612163 -22912415 + AluSx SINE Alu 63 275 -37 459 80 80 0 chr3 204612170 204612282 -22912296 + (TA)n Simple_repeat Simple_repeat 1 121 0 387 317 7 14 chr3 204613767 204613909 -22910669 + Tigger8 DNA MER2_type 287 427 -239 965 212 22 31 chr3 204614381 204614607 -22909971 - MER58A DNA MER1_type 0 224 1 1684 168 25 0 chr3 204615524 204615650 -22908928 + AluJb SINE Alu 6 127 -185 2069 89 34 17 chr3 204615650 204615943 -22908635 + AluSq SINE Alu 1 298 -15 1684 168 25 0 chr3 204615943 204616101 -22908477 + AluJb SINE Alu 127 297 -15 14940 119 59 42 chr3 204616825 204617236 -22907342 + Tigger4(Zombi) DNA MER2_type 2 405 -2326 2100 117 0 0 chr3 204617236 204617519 -22907059 - AluSx SINE Alu -27 285 3 14940 119 59 42 chr3 204617519 204619793 -22904785 + Tigger4(Zombi) DNA MER2_type 405 2731 0 7388 39 4 3 chr3 204619942 204621592 -22902986 - L1PA5 LINE L1 -4 6150 4501 908 57 0 0 chr3 204621594 204621716 -22902862 + L1PA5 LINE L1 4380 4501 -1645 1838 187 63 53 chr3 204621745 204622440 -22902138 - L1MB7 LINE L1 -66 6118 5432 1171 206 137 8 chr3 204622440 204622702 -22901876 - AluJo SINE Alu -6 296 1 1838 187 63 53 chr3 204622702 204622768 -22901810 - L1MB7 LINE L1 -752 5432 5368 2389 80 0 26 chr3 204622768 204623080 -22901498 - AluY SINE Alu -7 304 1 1838 187 63 53 chr3 204623080 204623153 -22901425 - L1MB7 LINE L1 -816 5368 5099 2075 131 7 0 chr3 204623774 204624065 -22900513 - AluSx SINE Alu -18 294 2 2270 98 3 0 chr3 204624197 204624494 -22900084 - AluSg SINE Alu -12 298 1 2514 60 0 3 chr3 204625043 204625345 -22899233 - AluY SINE Alu -10 301 1 1022 114 0 0 chr3 204625448 204625580 -22898998 + AluSq SINE Alu 1 132 -180 198 265 98 59 chr3 204625601 204625703 -22898875 - MIR SINE MIR -68 140 35 999 146 63 0 chr3 204625767 204625925 -22898653 + AluSq SINE Alu 134 301 -12 2385 91 0 0 chr3 204626044 204626341 -22898237 + AluSg1 SINE Alu 8 304 -5 650 116 0 0 chr3 204627508 204627603 -22896975 - AluJ/FLAM SINE Alu -217 95 1 1717 168 29 9 chr3 204627738 204628092 -22896486 + MLT1A1 LTR MaLR 1 365 0 235 222 56 0 chr3 204628393 204628447 -22896131 - L3 LINE CR1 -2 1575 1519 1585 133 53 34 chr3 204628494 204628603 -22895975 + AluJo SINE Alu 14 119 -193 2375 52 0 61 chr3 204628603 204628930 -22895648 + AluY SINE Alu 3 309 -2 1585 133 53 34 chr3 204628930 204629084 -22895494 + AluJo SINE Alu 119 282 -30 273 233 103 0 chr3 204629205 204629321 -22895257 - MER113 DNA MER1_type? -387 134 7 1009 77 53 41 chr3 204629671 204629840 -22894738 - MER30 DNA MER1_type -57 173 3 2206 99 13 7 chr3 204629891 204630194 -22894384 + AluSx SINE Alu 1 305 -7 386 272 107 23 chr3 204630478 204630739 -22893839 - L1MC/D LINE L1 -2256 5552 5270 2460 65 0 3 chr3 204630958 204631267 -22893311 - AluY SINE Alu -3 308 1 25 0 0 0 chr3 204631591 204631616 -22892962 + AT_rich Low_complexity Low_complexity 1 25 0 350 294 110 5 chr3 204631655 204631873 -22892705 - L1MC/D LINE L1 -2194 3952 3712 2032 127 3 3 chr3 204631879 204632179 -22892399 - AluSg SINE Alu -9 301 2 252 181 53 21 chr3 204632268 204632362 -22892216 - L1MC/D LINE L1 -2685 3461 3365 25 0 0 0 chr3 204632685 204632710 -22891868 + AT_rich Low_complexity Low_complexity 1 25 0 1891 120 24 24 chr3 204632796 204633137 -22891441 + LTR8 LTR ERV1 350 690 -1 2397 55 6 10 chr3 204633189 204633501 -22891077 - AluY SINE Alu 0 311 1 811 174 50 25 chr3 204633540 204633723 -22890855 - AluJb SINE Alu 0 312 129 26 30 0 0 chr3 204633723 204633756 -22890822 + AT_rich Low_complexity Low_complexity 1 33 0 599 143 0 19 chr3 204633798 204633903 -22890675 - FLAM_C SINE Alu -32 111 9 393 242 63 0 chr3 204635681 204635776 -22888802 - MIR SINE MIR -120 142 42 2136 128 3 3 chr3 204635941 204636238 -22888340 - AluSg SINE Alu -13 297 1 2143 67 14 18 chr3 204636390 204636672 -22887906 - AluY SINE Alu -30 281 1 258 337 61 50 chr3 204636906 204637087 -22887491 + MIR3 SINE MIR 20 202 -6 1479 165 55 110 chr3 204637396 204637558 -22887020 + MLT1B LTR MaLR 10 179 -211 2322 98 3 9 chr3 204637558 204637873 -22886705 + AluSq SINE Alu 1 313 0 1479 165 55 110 chr3 204637873 204638111 -22886467 + MLT1B LTR MaLR 179 388 -2 1512 191 28 17 chr3 204638257 204638545 -22886033 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr3 204638696 204638717 -22885861 + AT_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 204639086 204639110 -22885468 + AT_rich Low_complexity Low_complexity 1 24 0 332 306 69 14 chr3 204640535 204640679 -22883899 + MIR3 SINE MIR 3 154 -54 1715 135 18 18 chr3 204641034 204641308 -22883270 - AluJo SINE Alu -38 274 1 2957 153 173 135 chr3 204641320 204641852 -22882726 - L1MC3 LINE L1 0 7785 7275 2535 57 13 0 chr3 204641852 204642152 -22882426 - AluSp SINE Alu -9 304 1 2957 153 173 135 chr3 204642152 204642165 -22882413 - L1MC3 LINE L1 -510 7275 7264 313 277 27 45 chr3 204642165 204642277 -22882301 - MLT1F1 LTR MaLR -433 134 25 249 114 0 0 chr3 204642287 204642322 -22882256 + U2 snRNA snRNA 4 38 -150 2957 153 173 135 chr3 204642322 204642826 -22881752 - L1MC3 LINE L1 -529 7256 6533 1344 188 4 13 chr3 204643063 204643302 -22881276 + AluJo SINE Alu 1 237 -75 2439 92 0 0 chr3 204643438 204643742 -22880836 + AluSg SINE Alu 1 304 -6 1489 123 0 14 chr3 204644654 204644874 -22879704 + AluSg/x SINE Alu 83 299 -11 190 271 129 0 chr3 204645067 204645137 -22879441 + MIR SINE MIR 160 238 -24 2132 122 0 0 chr3 204646447 204646741 -22877837 - AluSq SINE Alu -19 294 1 833 137 33 60 chr3 204646934 204647117 -22877461 - AluY SINE Alu -27 284 107 234 0 0 0 chr3 204647563 204647589 -22876989 + (A)n Simple_repeat Simple_repeat 1 26 0 207 0 0 0 chr3 204647597 204647620 -22876958 + (CAAAC)n Simple_repeat Simple_repeat 2 24 0 238 306 0 0 chr3 204647956 204648018 -22876560 - MLT1K LTR MaLR -396 192 131 23 0 0 0 chr3 204648157 204648180 -22876398 + AT_rich Low_complexity Low_complexity 1 23 0 621 174 96 36 chr3 204648595 204648762 -22875816 - L1MD2 LINE L1 -323 6036 5860 80 21 0 0 chr3 204648762 204648856 -22875722 + AT_rich Low_complexity Low_complexity 1 94 0 194 0 39 0 chr3 204648921 204648947 -22875631 + (TA)n Simple_repeat Simple_repeat 1 27 0 2403 74 3 0 chr3 204648947 204649243 -22875335 - AluSx SINE Alu -15 297 1 1885 149 3 3 chr3 204649617 204649912 -22874666 + AluSx SINE Alu 1 295 -17 2342 216 81 6 chr3 204650098 204650602 -22873976 + MER34 LTR ERV1 1 542 0 2194 105 7 0 chr3 204650705 204650999 -22873579 - AluSq SINE Alu -17 296 1 243 0 0 0 chr3 204651006 204651033 -22873545 + (TAA)n Simple_repeat Simple_repeat 1 27 0 1462 156 78 19 chr3 204651295 204651565 -22873013 + AluJb SINE Alu 2 287 -25 219 114 0 0 chr3 204651576 204651611 -22872967 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 225 0 0 0 chr3 204651839 204651864 -22872714 + (TTTTG)n Simple_repeat Simple_repeat 2 26 0 2338 164 129 92 chr3 204651867 204651910 -22872668 - L1ME1 LINE L1 -190 5976 5936 1826 207 128 93 chr3 204651910 204652480 -22872098 + MLT1E LTR MaLR 1 590 -3 2338 164 129 92 chr3 204652480 204653133 -22871445 - L1ME1 LINE L1 -230 5936 5254 302 130 0 37 chr3 204653145 204653199 -22871379 - MLT2F LTR ERVL 0 663 612 1606 231 84 9 chr3 204653278 204653706 -22870872 - LTR40c LTR ERVL -5 460 1 3827 255 35 47 chr3 204653722 204654812 -22869766 - HERVL40 LTR ERVL -586 4944 3868 282 202 119 60 chr3 204654914 204654998 -22869580 + MLT2D LTR ERVL 294 382 -32 1042 290 75 30 chr3 204654998 204655442 -22869136 - L2 LINE L2 -917 2397 1930 2020 150 3 0 chr3 204655442 204655742 -22868836 - AluSx SINE Alu -11 301 1 1042 290 75 30 chr3 204655742 204655762 -22868816 - L2 LINE L2 -1384 1930 1912 329 226 35 48 chr3 204655851 204655981 -22868597 - MIR SINE MIR -61 147 38 261 333 65 48 chr3 204655995 204656163 -22868415 - MER5B DNA MER1_type -3 175 5 986 212 25 5 chr3 204656751 204656954 -22867624 - AluJb SINE Alu -45 267 61 263 341 183 0 chr3 204656958 204657084 -22867494 + L2 LINE L2 3124 3272 0 269 321 31 38 chr3 204657705 204657864 -22866714 - L1ME3A LINE L1 -34 6136 5979 486 255 63 22 chr3 204657931 204657989 -22866589 - L1ME3A LINE L1 -208 5962 5908 1961 144 10 3 chr3 204657989 204658287 -22866291 - AluSx SINE Alu -12 300 1 486 255 63 22 chr3 204658287 204658737 -22865841 - L1ME3A LINE L1 -262 5908 5285 2044 125 3 0 chr3 204658829 204659125 -22865453 - AluSx SINE Alu -13 299 3 2129 113 0 10 chr3 204659891 204660184 -22864394 - AluSx SINE Alu -22 290 1 364 304 36 9 chr3 204660202 204660314 -22864264 + L2 LINE L2 3199 3313 0 7375 45 25 16 chr3 204660389 204661838 -22862740 + SVA Other Other 4 1386 0 1282 220 36 3 chr3 204661839 204661994 -22862584 + L1MA10 LINE L1 6008 6156 -178 180 0 0 0 chr3 204661994 204662014 -22862564 + (TAA)n Simple_repeat Simple_repeat 2 21 0 1282 220 36 3 chr3 204662014 204662171 -22862407 + L1MA10 LINE L1 6156 6327 -7 374 253 0 80 chr3 204662685 204662847 -22861731 + L3 LINE CR1 1171 1319 -258 25 0 0 0 chr3 204663770 204663795 -22860783 + AT_rich Low_complexity Low_complexity 1 25 0 492 267 35 0 chr3 204664045 204664161 -22860417 + MIR3 SINE MIR 39 158 -50 876 176 0 113 chr3 204664166 204664288 -22860290 + Charlie5 DNA MER1_type 4 93 -2531 1547 181 7 11 chr3 204664288 204664600 -22859978 - AluJb SINE Alu 0 317 7 876 176 0 113 chr3 204664600 204664698 -22859880 + Charlie5 DNA MER1_type 93 200 -2424 * 1074 198 37 15 chr3 204664692 204664960 -22859618 + Charlie5 DNA MER1_type 2348 2621 0 644 291 82 0 chr3 204665040 204665236 -22859342 + MIR SINE MIR 14 225 -37 1300 81 0 0 chr3 204665350 204665511 -22859067 + AluSq SINE Alu 142 302 -11 343 228 25 0 chr3 204665837 204665916 -22858662 + Charlie5 DNA MER1_type 2348 2428 -184 31 0 0 0 chr3 204666132 204666163 -22858415 + AT_rich Low_complexity Low_complexity 1 31 0 1093 96 84 0 chr3 204666163 204666330 -22858248 - L1MA3 LINE L1 -1 6304 6124 1292 46 0 0 chr3 204666330 204666483 -22858095 + L1PA8 LINE L1 5990 6142 -30 198 118 0 0 chr3 204666489 204666523 -22858055 + (TAAAA)n Simple_repeat Simple_repeat 1 34 0 9374 140 35 31 chr3 204666578 204667063 -22857515 - L1MA3 LINE L1 -175 6130 5649 2416 88 0 0 chr3 204667063 204667360 -22857218 - AluSx SINE Alu -15 297 1 9374 140 35 31 chr3 204667360 204669418 -22855160 - L1MA3 LINE L1 -656 5649 3574 682 173 0 39 chr3 204669420 204669547 -22855031 - AluSg/x SINE Alu -1 308 187 1180 134 8 47 chr3 204669549 204669802 -22854776 - L1MA3 LINE L1 -3650 2496 2254 388 231 198 0 chr3 204669802 204669923 -22854655 + MIR SINE MIR 93 237 -25 1238 211 104 4 chr3 204669950 204670055 -22854523 + AluJb SINE Alu 1 94 -218 222 37 0 0 chr3 204670055 204670082 -22854496 + (GAAA)n Simple_repeat Simple_repeat 2 28 0 1238 211 104 4 chr3 204670082 204670236 -22854342 + AluJb SINE Alu 94 286 -26 24 67 0 0 chr3 204670266 204670311 -22854267 + AT_rich Low_complexity Low_complexity 1 45 0 24 32 0 0 chr3 204670373 204670404 -22854174 + AT_rich Low_complexity Low_complexity 1 31 0 732 174 0 0 chr3 204670406 204670521 -22854057 - FLAM_C SINE Alu -27 116 2 2273 103 0 3 chr3 204671171 204671481 -22853097 - AluSq SINE Alu -4 309 1 201 175 25 0 chr3 204671917 204671957 -22852621 + L2 LINE L2 3271 3311 -2 201 200 0 0 chr3 204672607 204672642 -22851936 - L2 LINE L2 -13 3300 3266 968 320 81 33 chr3 204673657 204674200 -22850378 - MLT1K LTR MaLR -13 575 7 2120 88 33 0 chr3 204674415 204674709 -22849869 - AluSq SINE Alu 0 303 1 27 0 0 0 chr3 204674710 204674737 -22849841 + AT_rich Low_complexity Low_complexity 1 27 0 342 127 0 0 chr3 204675531 204675602 -22848976 + (A)n Simple_repeat Simple_repeat 1 71 0 406 308 41 35 chr3 204675816 204675985 -22848593 - MLT1K LTR MaLR -290 298 129 1883 119 35 0 chr3 204676121 204676381 -22848197 - AluSx SINE Alu -10 302 34 259 24 143 0 chr3 204676393 204676435 -22848143 - L1P LINE L1 -942 5204 5157 1917 112 0 4 chr3 204676435 204676686 -22847892 - AluSq SINE Alu -63 250 1 231 163 41 20 chr3 204676888 204676937 -22847641 - MER5B DNA MER1_type -126 52 3 270 238 168 0 chr3 204677169 204677270 -22847308 + MIR SINE MIR 37 154 -108 4546 54 2 32 chr3 204677278 204677838 -22846740 + L1PA8A LINE L1 5583 6125 -6 2406 68 7 0 chr3 204678233 204678526 -22846052 - AluY SINE Alu -16 295 1 2340 226 52 63 chr3 204678526 204678672 -22845906 - MER20B DNA MER1_type -23 760 614 2086 134 3 10 chr3 204678672 204678971 -22845607 - AluSx SINE Alu -15 297 1 2340 226 52 63 chr3 204678971 204679591 -22844987 - MER20B DNA MER1_type -169 614 2 416 263 44 29 chr3 204679866 204680003 -22844575 - L2 LINE L2 0 3313 3175 2139 149 0 0 chr3 204680105 204680414 -22844164 - AluSx SINE Alu -2 310 2 230 296 35 17 chr3 204680758 204680873 -22843705 - HAL1 LINE L1 -150 2357 2241 286 266 173 64 chr3 204681028 204681234 -22843344 - MIR SINE MIR 0 262 39 1916 99 3 96 chr3 204681234 204681573 -22843005 - AluSq SINE Alu 0 310 1 2307 58 41 0 chr3 204681717 204682010 -22842568 - AluY SINE Alu -6 305 1 234 246 162 96 chr3 204682047 204682214 -22842364 - MIR SINE MIR -73 189 12 2253 117 3 0 chr3 204682302 204682610 -22841968 + AluSp SINE Alu 2 310 -3 307 348 77 56 chr3 204684224 204684600 -22839978 + L1M2 LINE L1 821 1204 -5645 348 237 85 114 chr3 204684649 204684885 -22839693 + L1M2 LINE L1 860 1088 -5761 189 235 59 20 chr3 204685185 204685236 -22839342 + MIR3 SINE MIR 145 197 -11 1829 171 7 0 chr3 204686298 204686602 -22837976 - AluSx SINE Alu -6 306 1 321 219 75 20 chr3 204686608 204686754 -22837824 - L1ME4a LINE L1 -1 6120 5967 2198 89 7 0 chr3 204686859 204687151 -22837427 - AluSx SINE Alu -2 310 17 374 277 11 0 chr3 204687360 204687454 -22837124 - MER5A DNA MER1_type -93 96 2 581 277 18 0 chr3 204687703 204687789 -22836789 + MER69A DNA AcHobo 1 84 -2442 2152 130 0 3 chr3 204687789 204688090 -22836488 - AluSx SINE Alu -12 300 1 581 277 18 0 chr3 204688090 204688169 -22836409 + MER69A DNA AcHobo 84 169 -8 474 326 7 14 chr3 204688273 204688411 -22836167 - L2 LINE L2 0 3272 3136 1650 163 51 31 chr3 204688720 204689014 -22835564 + AluJb SINE Alu 1 300 -12 2196 100 35 3 chr3 204689129 204689419 -22835159 - AluSq SINE Alu -14 299 1 1199 198 78 53 chr3 204689899 204690182 -22834396 + AluJo SINE Alu 1 290 -12 569 272 18 6 chr3 204690216 204690385 -22834193 + MLT1I LTR MaLR 39 209 -200 1966 130 13 25 chr3 204690428 204690744 -22833834 + AluSx SINE Alu 1 312 0 * 2138 116 0 3 chr3 204690743 204691046 -22833532 + LTR5 LTR ERVK 668 969 0 317 228 13 0 chr3 204691047 204691126 -22833452 + MLT1I LTR MaLR 330 409 0 209 286 16 16 chr3 204691226 204691289 -22833289 - L2 LINE L2 -4 3268 3206 396 0 0 0 chr3 204691618 204691662 -22832916 + (CA)n Simple_repeat Simple_repeat 1 44 0 247 342 137 0 chr3 204691729 204691846 -22832732 + L2 LINE L2 3180 3312 -1 220 77 0 77 chr3 204692119 204692136 -22832442 + (GAAAA)n Simple_repeat Simple_repeat 4 21 -30 2122 136 10 0 chr3 204692136 204692445 -22832133 + AluSx SINE Alu 1 312 0 220 77 0 77 chr3 204692445 204692479 -22832099 + (GAAAA)n Simple_repeat Simple_repeat 21 51 0 2200 109 0 0 chr3 204692824 204693148 -22831430 - AluSp SINE Alu 0 313 1 205 210 48 16 chr3 204693155 204693217 -22831361 + CT-rich Low_complexity Low_complexity 4 67 0 1472 188 57 14 chr3 204693235 204693517 -22831061 - AluJo SINE Alu -18 294 1 284 241 102 55 chr3 204693603 204693839 -22830739 - L1MC4 LINE L1 -284 7677 7431 2469 48 6 10 chr3 204694031 204694343 -22830235 - AluY SINE Alu 0 311 1 1723 191 0 43 chr3 204694654 204694979 -22829599 + AluJo SINE Alu 1 311 -1 2334 75 10 0 chr3 204695049 204695371 -22829207 + AluY SINE Alu 8 311 0 710 259 114 25 chr3 204695379 204695516 -22829062 + L1MC/D LINE L1 5340 5463 -2345 1771 173 33 3 chr3 204695516 204695817 -22828761 + AluJb SINE Alu 1 310 -2 710 259 114 25 chr3 204695817 204696004 -22828574 + L1MC/D LINE L1 5463 5693 -2115 1475 188 68 56 chr3 204696024 204696525 -22828053 + L1MDa LINE L1 2138 2644 -3896 800 163 0 8 chr3 204696525 204696654 -22827924 + FLAM_C SINE Alu 1 128 -5 578 148 17 0 chr3 204696736 204696851 -22827727 - Zaphod DNA AcHobo -1112 2919 2803 922 158 70 0 chr3 204696867 204697025 -22827553 + FAM SINE Alu 1 169 -6 767 184 0 6 chr3 204697027 204697195 -22827383 - L1MC3 LINE L1 -12 7773 7607 210 329 13 13 chr3 204697305 204697384 -22827194 - L2 LINE L2 -10 3303 3225 352 321 73 67 chr3 204697600 204698108 -22826470 - L2 LINE L2 -472 2842 2332 699 276 55 43 chr3 204698476 204698802 -22825776 - MER90 LTR ERV1 0 614 285 1500 131 0 151 chr3 204698839 204699191 -22825387 - AluJo SINE Alu -3 299 1 401 349 112 7 chr3 204699367 204699662 -22824916 + HAL1 LINE L1 236 561 -1946 3035 72 12 2 chr3 204699685 204700089 -22824489 - L1PA10 LINE L1 0 6168 5761 2040 57 32 0 chr3 204700089 204700369 -22824209 + L1PA10 LINE L1 5484 5772 -396 449 246 158 74 chr3 204700389 204700674 -22823904 + HAL1 LINE L1 579 887 -1620 1427 177 68 0 chr3 204700853 204701101 -22823477 + AluJb SINE Alu 1 265 -47 1802 260 125 49 chr3 204701153 204702316 -22822262 + HAL1 LINE L1 1201 2461 -46 2194 83 7 17 chr3 204702316 204702632 -22821946 + AluSx SINE Alu 2 312 0 1802 260 125 49 chr3 204702632 204702682 -22821896 + HAL1 LINE L1 2461 2506 -1 1232 206 130 0 chr3 204703362 204703615 -22820963 - AluJo SINE Alu -26 286 1 183 42 0 0 chr3 204703808 204703832 -22820746 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 984 204 57 58 chr3 204703832 204704251 -22820327 - L1MD2 LINE L1 -13 6229 5860 80 21 0 0 chr3 204704251 204704345 -22820233 + AT_rich Low_complexity Low_complexity 1 94 0 194 0 39 0 chr3 204704410 204704436 -22820142 + (TA)n Simple_repeat Simple_repeat 2 28 0 2416 68 3 0 chr3 204704436 204704732 -22819846 - AluSx SINE Alu -15 297 1 388 241 72 30 chr3 204706185 204706351 -22818227 - L1ME3A LINE L1 -11 6159 5987 1619 165 20 26 chr3 204706440 204706743 -22817835 - AluJo SINE Alu -11 301 1 2089 123 0 7 chr3 204706783 204707076 -22817502 + AluSx SINE Alu 1 291 -21 1689 99 116 83 chr3 204707105 204707249 -22817329 - AluSx SINE Alu 0 312 174 2287 93 0 20 chr3 204707249 204707551 -22817027 - AluSc SINE Alu -13 296 1 1689 99 116 83 chr3 204707551 204707708 -22816870 - AluSx SINE Alu -138 174 1 180 111 0 0 chr3 204708655 204708682 -22815896 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 25 65 0 0 chr3 204708963 204709009 -22815569 + AT_rich Low_complexity Low_complexity 1 46 0 761 215 65 5 chr3 204712531 204712731 -22811847 + LTR37A LTR ERV1 150 361 -65 273 194 113 0 chr3 204712809 204712871 -22811707 + MER5A DNA MER1_type 11 79 -110 724 226 21 26 chr3 204713340 204713380 -22811198 + MER5A DNA MER1_type 1 40 -149 1798 171 31 0 chr3 204713380 204713667 -22810911 - AluJb SINE Alu -16 296 1 724 226 21 26 chr3 204713667 204713816 -22810762 + MER5A DNA MER1_type 40 189 0 2846 3 0 0 chr3 204713928 204714234 -22810344 - AluY SINE Alu -5 306 1 288 257 9 28 chr3 204714853 204714962 -22809616 - L1MC5 LINE L1 -46 7915 7809 21 0 0 0 chr3 204715001 204715022 -22809556 + AT_rich Low_complexity Low_complexity 1 21 0 634 176 0 24 chr3 204715147 204715272 -22809306 + FLAM_C SINE Alu 1 122 -11 1733 167 27 14 chr3 204715288 204715581 -22808997 + AluJb SINE Alu 1 297 -15 25 0 0 0 chr3 204716577 204716602 -22807976 + AT_rich Low_complexity Low_complexity 1 25 0 2120 105 18 0 chr3 204717263 204717548 -22807030 - AluSg1 SINE Alu -19 290 1 2161 114 0 26 chr3 204717751 204718057 -22806521 + AluSx SINE Alu 1 298 -14 2246 100 0 13 chr3 204718720 204719021 -22805557 - AluSx SINE Alu -15 297 1 24 0 0 0 chr3 204720958 204720982 -22803596 + AT_rich Low_complexity Low_complexity 1 24 0 1284 261 141 23 chr3 204722096 204722878 -22801700 + HAL1 LINE L1 94 967 -1540 641 221 91 86 chr3 204722896 204723029 -22801549 + HAL1 LINE L1 1060 1191 -1316 2319 77 0 39 chr3 204723029 204723378 -22801200 + AluSx SINE Alu 1 312 0 641 221 91 86 chr3 204723378 204723583 -22800995 + HAL1 LINE L1 1191 1400 -1107 481 275 87 38 chr3 204723584 204723929 -22800649 + HAL1 LINE L1 1971 2332 -175 371 222 175 0 chr3 204723929 204724055 -22800523 + FLAM_A SINE Alu 1 131 -2 248 307 30 40 chr3 204725001 204725102 -22799476 + MIR SINE MIR 48 147 -115 427 143 10 71 chr3 204725287 204725385 -22799193 - MER46C DNA MER2_type -1 337 246 277 311 28 0 chr3 204725927 204726033 -22798545 - HAL1b LINE L1 -841 507 399 2149 133 0 7 chr3 204726132 204726433 -22798145 - AluSx SINE Alu -13 299 1 2429 233 31 65 chr3 204726539 204726696 -22797882 + L1MEc LINE L1 38 199 -6197 2060 107 11 0 chr3 204726696 204727002 -22797576 + AluSx SINE Alu 1 309 0 2429 233 31 65 chr3 204727002 204728014 -22796564 + L1MEc LINE L1 199 1289 -5107 2277 111 0 13 chr3 204728027 204728343 -22796235 + AluSx SINE Alu 1 312 0 1428 129 118 43 chr3 204728383 204728662 -22795916 + AluJb SINE Alu 1 300 -12 241 274 0 12 chr3 204728662 204728746 -22795832 + L1MEc LINE L1 3074 3156 -3059 2280 93 3 7 chr3 204728747 204729048 -22795530 + AluSp SINE Alu 1 300 -13 2411 94 0 0 chr3 204729048 204729357 -22795221 + AluSc SINE Alu 1 309 0 1963 103 69 17 chr3 204729397 204729747 -22794831 + THE1C LTR MaLR 8 375 0 253 221 87 10 chr3 204729749 204729853 -22794725 + L1MEc LINE L1 3176 3287 -2928 183 42 0 0 chr3 204729869 204729893 -22794685 + (TAGA)n Simple_repeat Simple_repeat 3 26 0 1493 216 10 31 chr3 204729899 204730283 -22794295 - MLT1B LTR MaLR -9 381 6 300 91 109 0 chr3 204730497 204730552 -22794026 + L1MA9 LINE L1 6243 6303 -9 21 0 0 0 chr3 204730832 204730853 -22793725 + AT_rich Low_complexity Low_complexity 1 21 0 349 221 74 13 chr3 204731006 204731155 -22793423 + L1MEc LINE L1 3915 4072 -2143 1763 141 7 44 chr3 204731703 204732000 -22792578 + AluJo SINE Alu 1 286 -26 21 0 0 0 chr3 204732000 204732021 -22792557 + AT_rich Low_complexity Low_complexity 1 21 0 462 317 21 31 chr3 204732049 204732239 -22792339 - MIR SINE MIR -62 146 6 38 0 0 0 chr3 204732773 204732811 -22791767 + AT_rich Low_complexity Low_complexity 1 38 0 342 252 0 0 chr3 204732829 204732944 -22791634 + A-rich Low_complexity Low_complexity 1 115 0 244 250 0 0 chr3 204733006 204733058 -22791520 - AluJ/monomer SINE Alu -250 52 1 2378 70 0 10 chr3 204733089 204733387 -22791191 + AluY SINE Alu 1 295 -16 333 346 58 5 chr3 204733789 204733994 -22790584 + MIR SINE MIR 19 234 -28 1973 135 6 16 chr3 204734202 204734513 -22790065 - AluSq SINE Alu -5 308 1 258 341 23 0 chr3 204734519 204734607 -22789971 - MIR3 SINE MIR -22 186 97 408 317 122 18 chr3 204734681 204734845 -22789733 + MER5A DNA MER1_type 8 188 -1 2204 111 3 0 chr3 204736757 204737045 -22787533 + AluSx SINE Alu 1 289 -23 21 100 0 0 chr3 204737052 204737122 -22787456 + AT_rich Low_complexity Low_complexity 1 70 0 270 302 70 23 chr3 204738316 204738445 -22786133 + L2 LINE L2 3177 3311 -2 227 239 60 15 chr3 204738487 204738554 -22786024 + MIR SINE MIR 31 100 -162 522 208 39 23 chr3 204738567 204738697 -22785881 + MIR SINE MIR 31 162 -100 2361 78 0 3 chr3 204739019 204739315 -22785263 + AluSq SINE Alu 2 296 -17 539 207 60 120 chr3 204740424 204740670 -22783908 + L1ME4a LINE L1 5687 5898 -223 2366 113 0 0 chr3 204740670 204740980 -22783598 + AluSx SINE Alu 1 310 -2 539 207 60 120 chr3 204740980 204741183 -22783395 + L1ME4a LINE L1 5898 6112 -9 3725 122 327 84 chr3 204741231 204742493 -22782085 + pTR5 LTR ERV1 276 2295 -143 519 325 97 27 chr3 204742495 204742824 -22781754 - L1MEd LINE L1 -3433 2696 2345 376 230 0 0 chr3 204742920 204742994 -22781584 - Tigger5 DNA MER2_type -1 2322 2249 * 1089 205 0 0 chr3 204742993 204743193 -22781385 - Tigger5 DNA MER2_type -2095 228 29 28 29 0 0 chr3 204743412 204743447 -22781131 + GC_rich Low_complexity Low_complexity 1 35 0 201 175 0 0 chr3 204745029 204745069 -22779509 + GA-rich Low_complexity Low_complexity 3 42 0 2120 98 7 3 chr3 204746590 204746876 -22777702 + AluSq SINE Alu 1 287 -26 243 0 0 0 chr3 204746876 204746903 -22777675 + (CA)n Simple_repeat Simple_repeat 2 28 0 902 148 7 7 chr3 204746918 204747060 -22777518 + FRAM SINE Alu 20 161 -15 1737 166 14 14 chr3 204747606 204747896 -22776682 - AluJo SINE Alu -22 290 1 229 193 0 0 chr3 204747900 204747957 -22776621 - L1MEd LINE L1 -3959 2170 2114 2127 125 0 0 chr3 204748327 204748622 -22775956 - AluSx SINE Alu -17 295 1 539 289 89 31 chr3 204748630 204749569 -22775009 - L1MEd LINE L1 -4573 1737 700 24 32 0 0 chr3 204749569 204749600 -22774978 + AT_rich Low_complexity Low_complexity 1 31 0 2052 148 0 0 chr3 204749602 204749893 -22774685 - AluSx SINE Alu -21 291 1 1962 115 37 10 chr3 204749952 204750247 -22774331 - AluSc SINE Alu -6 303 1 549 318 34 75 chr3 204750247 204750804 -22773774 - L1MEd LINE L1 -5453 666 133 2301 112 0 0 chr3 204750947 204751252 -22773326 - AluSx SINE Alu -7 305 1 2380 74 3 0 chr3 204751746 204752044 -22772534 + AluY SINE Alu 1 299 -12 539 205 117 76 chr3 204752510 204752756 -22771822 - MER102b DNA MER1_type -1098 330 67 2084 105 30 16 chr3 204752756 204753061 -22771517 + AluSg SINE Alu 1 309 -1 539 205 117 76 chr3 204753061 204753131 -22771447 - MER102b DNA MER1_type -1361 67 1 239 89 0 89 chr3 204754418 204754463 -22770115 + L2 LINE L2 3261 3301 -12 1227 118 5 47 chr3 204754507 204754718 -22769860 + Tigger2a DNA MER2_type 1 202 -232 2464 99 17 14 chr3 204754718 204755080 -22769498 - L1PA11 LINE L1 -1 6173 5811 2236 82 6 48 chr3 204755081 204755397 -22769181 - AluSg SINE Alu -7 303 1 2066 116 3 10 chr3 204755522 204755814 -22768764 - AluSx SINE Alu -22 290 1 233 307 44 35 chr3 204755832 204755946 -22768632 + L2 LINE L2 3199 3313 0 365 188 62 0 chr3 204756157 204756253 -22768325 + FAM SINE Alu 63 164 -11 550 264 120 45 chr3 204756539 204756781 -22767797 - MIR SINE MIR -2 260 1 273 93 58 12 chr3 204757158 204757244 -22767334 + (TA)n Simple_repeat Simple_repeat 1 90 0 814 264 69 20 chr3 204757325 204757731 -22766847 - L1ME LINE L1 -483 5687 5262 33 56 0 0 chr3 204757970 204758024 -22766554 + AT_rich Low_complexity Low_complexity 1 54 0 501 229 79 36 chr3 204758946 204759086 -22765492 - L2 LINE L2 -1 3312 3167 2899 126 11 2 chr3 204759104 204759571 -22765007 + Tigger2 DNA MER2_type 1 471 -2247 2081 101 22 0 chr3 204759572 204759849 -22764729 + AluSq SINE Alu 1 283 -30 210 369 36 36 chr3 204759862 204759973 -22764605 - L2 LINE L2 -4 3268 3158 246 284 172 0 chr3 204760255 204760371 -22764207 - MER5A DNA MER1_type -2 187 52 * 401 246 48 87 chr3 204760292 204760418 -22764160 + MER5A DNA MER1_type 69 189 0 655 253 142 24 chr3 204763133 204763429 -22761149 - MER46C DNA MER2_type -1 337 7 2686 36 0 0 chr3 204764167 204764474 -22760104 + AluYa5 SINE Alu 1 307 -4 1889 159 0 13 chr3 204765066 204765380 -22759198 - AluJb SINE Alu -2 310 1 304 291 39 0 chr3 204765464 204765567 -22759011 - L1MDa LINE L1 -4886 1654 1548 1632 112 130 7 chr3 204765654 204765923 -22758655 + AluSx SINE Alu 1 302 0 791 177 51 51 chr3 204766803 204766961 -22757617 - AluJo/FRAM SINE Alu -26 286 129 2165 147 0 0 chr3 204766963 204767275 -22757303 - AluJo SINE Alu 0 312 1 539 142 0 94 chr3 204767275 204767381 -22757197 + Tigger2 DNA MER2_type 2622 2717 -1 556 273 15 0 chr3 204767426 204767558 -22757020 - MIR SINE MIR -61 201 68 529 158 0 42 chr3 204768202 204768297 -22756281 - FLAM_C SINE Alu -7 136 46 2131 122 0 0 chr3 204769297 204769591 -22754987 - AluSx SINE Alu -18 294 1 1945 100 24 21 chr3 204769922 204770212 -22754366 + AluSq SINE Alu 1 291 -22 216 353 35 43 chr3 204770212 204770322 -22754256 - L2 LINE L2 -6 3266 3158 246 284 172 0 chr3 204770604 204770720 -22753858 - MER5A DNA MER1_type -2 187 52 * 401 246 48 87 chr3 204770641 204770767 -22753811 + MER5A DNA MER1_type 69 189 0 2187 130 3 0 chr3 204773305 204773606 -22750972 - AluSx SINE Alu -10 302 1 531 85 0 24 chr3 204773854 204773936 -22750642 + MADE1 DNA Mariner 1 80 0 390 304 53 29 chr3 204774394 204774565 -22750013 + MIR SINE MIR 88 262 0 198 191 0 0 chr3 204775296 204775338 -22749240 + (CATATA)n Simple_repeat Simple_repeat 1 42 0 26 64 0 0 chr3 204776244 204776291 -22748287 + AT_rich Low_complexity Low_complexity 1 47 0 23 86 0 0 chr3 204777363 204777421 -22747157 + AT_rich Low_complexity Low_complexity 1 58 0 23 54 0 0 chr3 204780412 204780449 -22744129 + AT_rich Low_complexity Low_complexity 1 37 0 21 36 0 0 chr3 204781193 204781221 -22743357 + AT_rich Low_complexity Low_complexity 1 28 0 456 246 355 4 chr3 204781673 204781901 -22742677 + L2 LINE L2 3006 3313 0 23 33 0 0 chr3 204782277 204782307 -22742271 + AT_rich Low_complexity Low_complexity 1 30 0 5374 158 130 24 chr3 204782315 204782558 -22742020 + L1PB3 LINE L1 3958 4174 -1980 2082 143 0 3 chr3 204782558 204782859 -22741719 + AluSx SINE Alu 1 300 -12 5374 158 130 24 chr3 204782859 204783774 -22740804 + L1PB3 LINE L1 4174 4991 -1163 2284 103 3 3 chr3 204783774 204784085 -22740493 + AluSp SINE Alu 1 311 -2 5374 158 130 24 chr3 204784085 204784886 -22739692 + L1PB3 LINE L1 4991 6151 -3 1862 150 7 3 chr3 204784949 204785243 -22739335 - AluJo SINE Alu -17 295 1 4825 168 70 35 chr3 204786793 204787895 -22736683 - Charlie1 DNA MER1_type 0 2761 1621 23 97 0 0 chr3 204788484 204788556 -22736022 + AT_rich Low_complexity Low_complexity 1 72 0 528 188 129 0 chr3 204789971 204790072 -22734506 - FLAM_A SINE Alu -21 121 8 421 248 151 72 chr3 204790262 204790540 -22734038 + L2 LINE L2 3014 3313 0 23 0 0 0 chr3 204791073 204791096 -22733482 + AT_rich Low_complexity Low_complexity 1 23 0 874 186 68 6 chr3 204791919 204792096 -22732482 + MER58A DNA MER1_type 37 224 0 1572 167 0 139 chr3 204792807 204793167 -22731411 + Tigger5 DNA MER2_type 1 310 -2013 476 153 0 35 chr3 204793149 204793234 -22731344 + Tigger5 DNA MER2_type 2242 2323 0 * 1963 161 0 0 chr3 204793707 204794018 -22730560 + AluJb SINE Alu 1 311 -1 686 342 31 4 chr3 204794252 204794480 -22730098 - MIR SINE MIR -8 254 21 23 0 0 0 chr3 204794744 204794767 -22729811 + AT_rich Low_complexity Low_complexity 1 23 0 22 80 0 0 chr3 204795928 204795978 -22728600 + AT_rich Low_complexity Low_complexity 1 50 0 370 331 60 18 chr3 204798289 204798455 -22726123 - L2 LINE L2 -4 3309 3137 279 338 281 17 chr3 204798529 204798831 -22725747 - L2 LINE L2 -338 2976 2595 526 147 80 7 chr3 204798886 204799036 -22725542 - Looper DNA T2_type -58 1500 1340 4471 152 59 95 chr3 204799053 204799620 -22724958 - Looper DNA T2_type -371 1187 684 909 154 31 70 chr3 204799620 204799847 -22724731 + MER20 DNA MER1_type 2 219 0 4471 152 59 95 chr3 204799847 204800464 -22724114 - Looper DNA T2_type -874 684 46 6571 120 56 12 chr3 204800954 204802026 -22722552 + Tigger1 DNA MER2_type 1 1119 -1299 2537 141 40 67 chr3 204802022 204802527 -22722051 + Tigger1 DNA MER2_type 1928 2418 0 * 266 241 45 83 chr3 204802530 204802663 -22721915 + L2 LINE L2 3008 3135 -178 1337 186 24 4 chr3 204802675 204802928 -22721650 - Tigger2 DNA MER2_type -10 2708 2451 787 137 0 0 chr3 204802974 204803091 -22721487 + FLAM_C SINE Alu 1 117 -16 2227 92 10 0 chr3 204803097 204803389 -22721189 - AluSx SINE Alu -17 295 1 3078 126 11 2 chr3 204803390 204803857 -22720721 - Tigger2 DNA MER2_type -2247 471 1 508 229 79 36 chr3 204803875 204804015 -22720563 + L2 LINE L2 3167 3312 -1 33 56 0 0 chr3 204804938 204804992 -22719586 + AT_rich Low_complexity Low_complexity 1 54 0 950 264 69 20 chr3 204805231 204805637 -22718941 + L1ME LINE L1 5262 5687 -483 273 93 58 12 chr3 204805718 204805804 -22718774 + (TA)n Simple_repeat Simple_repeat 1 90 0 564 264 120 45 chr3 204806181 204806423 -22718155 + MIR SINE MIR 1 260 -2 854 180 6 58 chr3 204806711 204806883 -22717695 - FAM SINE Alu -11 164 2 1852 114 96 0 chr3 204806958 204807239 -22717339 + AluSx SINE Alu 1 308 -4 2140 67 0 67 chr3 204807805 204808121 -22716457 - AluY SINE Alu -16 295 1 448 114 14 0 chr3 204808127 204808197 -22716381 - L1M4 LINE L1 -1235 4911 4841 855 234 72 8 chr3 204808395 204808630 -22715948 - L1M4 LINE L1 -1315 4831 4582 6518 238 67 23 chr3 204808633 204810774 -22713804 - L1M4 LINE L1 -1608 4538 2304 228 135 0 0 chr3 204811296 204811333 -22713245 + (TG)n Simple_repeat Simple_repeat 1 37 0 198 143 0 0 chr3 204811368 204811403 -22713175 + (GGGA)n Simple_repeat Simple_repeat 3 37 0 279 292 70 41 chr3 204811420 204811591 -22712987 - L1M4 LINE L1 -2301 3845 3670 346 261 29 66 chr3 204811904 204812133 -22712445 + L1M4 LINE L1 4452 4675 -1471 729 269 142 29 chr3 204812696 204813280 -22711298 + HAL1 LINE L1 1121 1770 -737 380 247 37 31 chr3 204813814 204813976 -22710602 + HAL1b LINE L1 749 911 -437 294 209 0 15 chr3 204814818 204814885 -22709693 - LTR50 LTR ERVL -727 68 3 330 321 43 29 chr3 204815124 204815264 -22709314 + MIR SINE MIR 35 176 -86 215 346 114 14 chr3 204815268 204815479 -22709099 - L2 LINE L2 -8 3305 3074 807 178 18 31 chr3 204815847 204816010 -22708568 + FRAM SINE Alu 7 167 -9 263 343 102 0 chr3 204816012 204816120 -22708458 + MER5A DNA MER1_type 68 186 -3 2230 109 3 6 chr3 204816499 204816811 -22707767 - AluSp SINE Alu -2 311 1 189 326 35 58 chr3 204817038 204817124 -22707454 - L2 LINE L2 0 3313 3230 268 358 37 0 chr3 204817424 204817558 -22707020 - L1ME LINE L1 -489 5632 5494 521 218 45 23 chr3 204817887 204818020 -22706558 - FLAM_A SINE Alu -3 139 4 330 335 59 47 chr3 204818309 204818631 -22705947 - L1ME LINE L1 -1316 4830 4505 266 324 70 0 chr3 204818688 204818873 -22705705 - L1ME LINE L1 -1735 4411 4214 811 193 0 7 chr3 204818901 204819046 -22705532 + AluJo SINE Alu 16 159 -153 213 246 15 15 chr3 204819178 204819243 -22705335 + (CATATA)n Simple_repeat Simple_repeat 4 68 0 198 327 0 0 chr3 204819385 204819440 -22705138 + L2 LINE L2 3214 3268 -45 22 0 0 0 chr3 204819489 204819511 -22705067 + AT_rich Low_complexity Low_complexity 1 22 0 2182 91 3 3 chr3 204819695 204819981 -22704597 - AluSx SINE Alu -25 287 2 3500 165 15 5 chr3 204821119 204821714 -22702864 + MER7C DNA MER2_type 2 602 0 204 299 69 35 chr3 204821813 204821900 -22702678 + MIR SINE MIR 118 207 -55 751 230 109 57 chr3 204823389 204823619 -22700959 - MIR SINE MIR -11 251 10 292 231 147 56 chr3 204824828 204824971 -22699607 + L3b LINE CR1 1308 1463 -120 251 301 140 0 chr3 204825414 204825507 -22699071 - MIR SINE MIR -66 142 37 1811 161 36 21 chr3 204825635 204825971 -22698607 + MER2 DNA MER2_type 1 341 -3 186 271 119 0 chr3 204826110 204826169 -22698409 - L2 LINE L2 -21 3251 3186 27 0 0 0 chr3 204826634 204826661 -22697917 + AT_rich Low_complexity Low_complexity 1 27 0 2080 118 9 18 chr3 204826854 204827183 -22697395 - MER1B DNA MER1_type 0 339 14 1684 136 100 18 chr3 204827724 204828054 -22696524 - MER46B DNA MER2_type -4 232 1 305 315 223 10 chr3 204828753 204828950 -22695628 - MIR SINE MIR -6 256 18 318 319 140 38 chr3 204828953 204829110 -22695468 - MIR3 SINE MIR -11 197 25 448 305 69 59 chr3 204829343 204829733 -22694845 - L2 LINE L2 -18 3295 2857 601 221 55 72 chr3 204829758 204829939 -22694639 + MER5B DNA MER1_type 1 178 0 330 67 0 0 chr3 204831199 204831244 -22693334 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr3 204832468 204832489 -22692089 + GC_rich Low_complexity Low_complexity 1 21 0 315 253 64 138 chr3 204832659 204833051 -22691527 + L1M2 LINE L1 934 1296 -5553 2155 118 3 3 chr3 204834652 204834958 -22689620 - AluSx SINE Alu -6 306 1 805 177 0 0 chr3 204834979 204835109 -22689469 - FLAM_C SINE Alu -13 130 1 2488 79 0 0 chr3 204835826 204836131 -22688447 - AluSg SINE Alu -5 305 1 413 182 116 16 chr3 204836183 204836304 -22688274 - L1ME LINE L1 -3358 2722 2590 1603 233 71 33 chr3 204836336 204837382 -22687196 - L1ME LINE L1 -3597 2483 1399 1771 155 0 29 chr3 204837771 204838081 -22686497 + AluJo SINE Alu 1 301 -11 2237 38 0 4 chr3 204838200 204838461 -22686117 + AluY SINE Alu 39 298 -13 1039 245 57 60 chr3 204838470 204839357 -22685221 - L1ME LINE L1 -4827 1253 386 11380 191 23 8 chr3 204839366 204840771 -22683807 - L1PA15 LINE L1 -2 7601 6218 2031 114 0 45 chr3 204840771 204841079 -22683499 - AluSg SINE Alu -10 300 7 11380 191 23 8 chr3 204841079 204843366 -22681212 - L1PA15 LINE L1 -1385 6218 3854 1871 275 47 63 chr3 204843421 204844525 -22680053 - L1PA15 LINE L1 -5678 1903 11 396 282 86 88 chr3 204844527 204845005 -22679573 - L1ME LINE L1 -5581 489 13 9301 148 42 24 chr3 204845478 204845973 -22678605 - L1MA4A LINE L1 -6 6999 6515 306 0 0 0 chr3 204845973 204846007 -22678571 + (TA)n Simple_repeat Simple_repeat 2 35 0 9301 148 42 24 chr3 204846007 204848533 -22676045 - L1MA4A LINE L1 -490 6515 3898 42376 37 4 2 chr3 204848533 204854676 -22669902 + L1PA3 LINE L1 1 6155 0 2406 73 0 3 chr3 204854767 204855068 -22669510 + AluSq SINE Alu 1 300 -13 7372 173 27 20 chr3 204855069 204857537 -22667041 - L1MA4A LINE L1 -2941 3907 1421 1818 181 0 18 chr3 204857523 204857861 -22666717 - L1MA4A LINE L1 -6515 334 3 * 264 276 33 20 chr3 204857863 204858015 -22666563 - L1M4 LINE L1 -905 5241 5088 1833 160 0 10 chr3 204858020 204858308 -22666270 + AluJb SINE Alu 1 285 -27 264 30 0 0 chr3 204858469 204858502 -22666076 + (TG)n Simple_repeat Simple_repeat 2 34 0 2288 129 19 44 chr3 204858514 204858923 -22665655 - L1M4 LINE L1 -1419 4727 4330 1779 178 36 7 chr3 204858923 204859226 -22665352 + AluSx SINE Alu 1 312 0 2288 129 19 44 chr3 204859226 204859290 -22665288 - L1M4 LINE L1 -1816 4330 4266 6204 65 30 53 chr3 204859293 204860270 -22664308 - SVA Other Other 0 1386 433 1120 121 10 83 chr3 204860287 204860674 -22663904 - SVA Other Other -520 866 508 290 330 0 22 chr3 204860726 204860908 -22663670 + C-rich Low_complexity Low_complexity 1 178 0 263 280 28 21 chr3 204860846 204860989 -22663589 + (CCCCG)n Simple_repeat Simple_repeat 1 144 0 * 2697 86 38 90 chr3 204861250 204861752 -22662826 - SVA Other Other -518 868 393 1893 150 15 3 chr3 204861820 204862159 -22662419 - L1M4 LINE L1 -1869 4277 3935 322 86 62 0 chr3 204862163 204862244 -22662334 + (TA)n Simple_repeat Simple_repeat 1 86 0 1174 196 0 5 chr3 204862244 204862453 -22662125 - AluJo SINE Alu -24 288 81 5607 195 40 9 chr3 204862453 204863806 -22660772 - L1M4 LINE L1 -2203 3943 2549 318 26 0 0 chr3 204863956 204863995 -22660583 + (TC)n Simple_repeat Simple_repeat 2 40 0 577 123 226 27 chr3 204864940 204865086 -22659492 - MER4A LTR ERV1 0 465 291 1912 115 24 68 chr3 204865115 204865514 -22659064 - MER4A LTR ERV1 -235 354 1 918 220 28 0 chr3 204865676 204865858 -22658720 - MER5A DNA MER1_type 0 189 3 1599 167 19 7 chr3 204865996 204866265 -22658313 - AluJo SINE Alu -40 272 1 270 250 56 46 chr3 204866306 204866414 -22658164 + MER46C DNA MER2_type 9 117 -221 2120 131 6 13 chr3 204866469 204866783 -22657795 - AluSx SINE Alu 0 312 1 2490 220 31 6 chr3 204866835 204867472 -22657106 - L1MC4 LINE L1 -205 7837 7185 375 276 121 43 chr3 204867662 204868173 -22656405 - HAL1 LINE L1 -1221 1286 736 262 262 33 77 chr3 204868289 204868472 -22656106 - HAL1 LINE L1 -2319 188 14 301 244 113 17 chr3 204868561 204868676 -22655902 - L1M4 LINE L1 -1538 4608 4483 290 290 0 0 chr3 204869168 204869237 -22655341 + L2 LINE L2 3245 3313 0 481 318 119 8 chr3 204869244 204869480 -22655098 - L3b LINE CR1 -50 1533 1272 210 357 0 20 chr3 204869735 204869833 -22654745 + MER5B DNA MER1_type 2 97 -81 938 135 0 0 chr3 204870021 204870154 -22654424 - FLAM_C SINE Alu 0 133 1 2100 100 0 11 chr3 204870292 204870572 -22654006 - AluSc SINE Alu -32 277 1 4501 164 26 50 chr3 204871604 204872477 -22652101 + MER21B LTR ERV1 1 852 -11 340 252 9 45 chr3 204873702 204873813 -22650765 - U6 snRNA snRNA 0 107 1 1619 170 20 31 chr3 204875150 204875444 -22649134 - AluJb SINE Alu -21 291 1 203 147 0 0 chr3 204876789 204876823 -22647755 + (CA)n Simple_repeat Simple_repeat 2 35 0 2021 194 114 85 chr3 204878157 204878669 -22645909 - L1ME2 LINE L1 -1 6163 5667 2689 173 45 27 chr3 204878669 204879219 -22645359 + MER68 LTR ERV1 3 562 0 2021 194 114 85 chr3 204879219 204879552 -22645026 - L1ME2 LINE L1 -497 5667 5273 1122 150 103 159 chr3 204879552 204879872 -22644706 - AluJb SINE Alu 0 302 1 2021 194 114 85 chr3 204879872 204880071 -22644507 - L1ME2 LINE L1 -891 5273 5081 2326 108 0 0 chr3 204880219 204880526 -22644052 + AluSx SINE Alu 3 309 -3 389 286 85 54 chr3 204880535 204880794 -22643784 + L1MC4a LINE L1 5097 5363 -783 688 301 87 19 chr3 204880796 204881258 -22643320 + L1MC4a LINE L1 5412 5904 -1904 438 268 45 32 chr3 204881837 204881994 -22642584 + HAL1 LINE L1 748 906 -1601 1727 287 89 8 chr3 204882105 204882882 -22641696 + HAL1 LINE L1 1088 1927 -580 938 150 35 132 chr3 204883477 204883633 -22640945 - AluJo SINE Alu -26 286 157 2451 77 3 6 chr3 204883633 204883944 -22640634 - AluSg SINE Alu 0 310 1 938 150 35 132 chr3 204883944 204884014 -22640564 - AluJo SINE Alu -155 157 82 655 253 142 24 chr3 204884410 204884706 -22639872 - MER46C DNA MER2_type -1 337 7 2752 20 0 0 chr3 204885444 204885745 -22638833 + AluYa5 SINE Alu 1 301 -10 202 350 50 25 chr3 204886073 204886193 -22638385 + L2 LINE L2 3186 3308 -5 1662 175 58 0 chr3 204886315 204886428 -22638150 + AluJb SINE Alu 1 106 -206 207 0 0 0 chr3 204886428 204886451 -22638127 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1662 175 58 0 chr3 204886451 204886628 -22637950 + AluJb SINE Alu 106 308 -4 2310 84 7 3 chr3 204886779 204887075 -22637503 + AluY SINE Alu 1 297 -14 25 0 0 0 chr3 204887103 204887128 -22637450 + AT_rich Low_complexity Low_complexity 1 25 0 187 224 0 60 chr3 204888865 204888932 -22635646 - L2 LINE L2 -92 3221 3159 31 0 0 0 chr3 204889373 204889404 -22635174 + AT_rich Low_complexity Low_complexity 1 31 0 21 0 0 0 chr3 204890347 204890368 -22634210 + AT_rich Low_complexity Low_complexity 1 21 0 221 333 40 0 chr3 204890509 204890608 -22633970 - MIR3 SINE MIR -3 205 103 274 302 32 0 chr3 204891296 204891359 -22633219 - L2 LINE L2 -42 3230 3166 2343 97 7 0 chr3 204891551 204891850 -22632728 + AluSg SINE Alu 1 301 -9 520 294 101 13 chr3 204891892 204892120 -22632458 + L2 LINE L2 2447 2694 -620 287 255 255 35 chr3 204893090 204893231 -22631347 - MIR SINE MIR -85 177 6 785 340 4 8 chr3 204893266 204893516 -22631062 + MIR SINE MIR 12 260 -2 1889 137 27 10 chr3 204894369 204894669 -22629909 + AluJb SINE Alu 1 305 -7 1094 205 13 13 chr3 204896075 204896299 -22628279 + MER58A DNA MER1_type 1 224 0 474 317 132 21 chr3 204896563 204896844 -22627734 - L3 LINE CR1 -285 1292 981 2309 84 0 3 chr3 204896950 204897262 -22627316 + AluSq SINE Alu 1 311 0 1213 188 193 16 chr3 204897616 204897999 -22626579 + LTR48 LTR ERV1 1 451 -336 675 158 60 74 chr3 204897997 204898222 -22626356 + LTR48 LTR ERV1 418 787 0 * 193 375 16 0 chr3 204898490 204898554 -22626024 + L2 LINE L2 3116 3180 -92 2160 138 0 6 chr3 204899644 204899956 -22624622 - AluSx SINE Alu -1 311 2 24 32 0 0 chr3 204900173 204900204 -22624374 + AT_rich Low_complexity Low_complexity 1 31 0 240 278 0 0 chr3 204900878 204900950 -22623628 + MIR SINE MIR 121 192 -70 982 80 8 0 chr3 204900950 204901075 -22623503 + AluSg SINE Alu 1 126 -184 561 233 27 112 chr3 204901782 204902113 -22622465 - L1MB8 LINE L1 -36 6142 5840 539 89 0 50 chr3 204902169 204902270 -22622308 + (TTCC)n Simple_repeat Simple_repeat 4 99 0 250 191 0 0 chr3 204902483 204902530 -22622048 - Tigger5 DNA MER2_type -2268 55 9 1714 104 71 0 chr3 204902927 204903195 -22621383 + L1PA10 LINE L1 5863 6149 -19 186 103 0 0 chr3 204903195 204903224 -22621354 + (CGAAA)n Simple_repeat Simple_repeat 2 30 0 795 263 42 29 chr3 204903387 204903699 -22620879 - MER21A LTR ERV1 -132 799 484 * 804 181 84 0 chr3 204903682 204903848 -22620730 - MER21B LTR ERV1 -485 378 199 214 211 132 13 chr3 204904100 204904176 -22620402 - MER5A DNA MER1_type -6 183 99 210 37 0 0 chr3 204904593 204904620 -22619958 + (TCTG)n Simple_repeat Simple_repeat 2 28 0 441 81 0 0 chr3 204904670 204904732 -22619846 + (CA)n Simple_repeat Simple_repeat 2 63 0 513 207 0 0 chr3 204905153 204905409 -22619169 + ACRO1 Satellite acromeric 1 256 -38 996 97 7 0 chr3 204905741 204906503 -22618075 + ACRO1 Satellite acromeric 1 767 -40 341 306 65 6 chr3 204906760 204906930 -22617648 - HAL1 LINE L1 -723 1784 1605 915 216 53 128 chr3 204906935 204907231 -22617347 - MLT1A2 LTR MaLR -8 366 124 1550 200 7 13 chr3 204907231 204907541 -22617037 - AluJo SINE Alu -4 308 1 915 216 53 128 chr3 204907541 204907657 -22616921 - MLT1A2 LTR MaLR -250 124 1 1047 235 88 69 chr3 204907662 204907693 -22616885 - HAL1 LINE L1 -904 1603 1574 2393 79 3 0 chr3 204907693 204907985 -22616593 + AluSp SINE Alu 1 293 -20 1047 235 88 69 chr3 204907985 204908256 -22616322 - HAL1 LINE L1 -933 1574 1310 2309 140 55 26 chr3 204908256 204908671 -22615907 + MSTA LTR MaLR 2 428 0 1047 235 88 69 chr3 204908671 204908908 -22615670 - HAL1 LINE L1 -1197 1310 1047 1925 207 151 12 chr3 204908908 204909406 -22615172 + MLT1F1 LTR MaLR 1 567 0 1047 235 88 69 chr3 204909406 204909486 -22615092 - HAL1 LINE L1 -1460 1047 970 22 0 0 0 chr3 204909550 204909572 -22615006 + AT_rich Low_complexity Low_complexity 1 22 0 3442 139 29 0 chr3 204909740 204910252 -22614326 + MER1A DNA MER1_type 1 527 0 2194 122 6 3 chr3 204910348 204910659 -22613919 - AluSx SINE Alu 0 312 1 496 225 152 0 chr3 204910942 204911093 -22613485 + MIR SINE MIR 65 238 -24 277 286 29 9 chr3 204911105 204911210 -22613368 + CT-rich Low_complexity Low_complexity 1 107 0 219 69 0 0 chr3 204911288 204911317 -22613261 + (TTTTC)n Simple_repeat Simple_repeat 2 30 0 843 215 17 0 chr3 204911319 204911491 -22613087 - FRAM SINE Alu -1 175 1 195 125 0 0 chr3 204911840 204911880 -22612698 + (TG)n Simple_repeat Simple_repeat 2 41 0 21 0 0 0 chr3 204912678 204912699 -22611879 + AT_rich Low_complexity Low_complexity 1 21 0 2728 13 3 0 chr3 204912826 204913127 -22611451 - AluY SINE Alu -9 302 1 1988 179 22 16 chr3 204913246 204913609 -22610969 + MLT1A1 LTR MaLR 1 365 0 22 0 0 0 chr3 204913693 204913715 -22610863 + AT_rich Low_complexity Low_complexity 1 22 0 1529 178 10 58 chr3 204913957 204914266 -22610312 + AluJo SINE Alu 5 298 -14 225 350 17 25 chr3 204914333 204914453 -22610125 + MIR SINE MIR 20 138 -70 202 191 56 34 chr3 204916441 204916530 -22608048 + A-rich Low_complexity Low_complexity 4 94 0 2175 213 39 48 chr3 204916621 204917162 -22607416 - MLT1F LTR MaLR -6 536 1 237 65 0 0 chr3 204917649 204917680 -22606898 + (TG)n Simple_repeat Simple_repeat 2 32 0 1618 155 7 35 chr3 204917682 204917972 -22606606 - AluJb SINE Alu -30 282 1 23 86 0 0 chr3 204918041 204918099 -22606479 + AT_rich Low_complexity Low_complexity 1 58 0 304 299 51 22 chr3 204918865 204919002 -22605576 - MLT1J2 LTR MaLR -37 413 273 616 149 28 0 chr3 204919846 204919953 -22604625 - HY1 scRNA scRNA -2 110 1 761 274 28 24 chr3 204920712 204920964 -22603614 + HERV16 LTR ERVL 613 865 -4131 2438 80 0 3 chr3 204921241 204921553 -22603025 + AluY SINE Alu 1 311 0 253 298 39 0 chr3 204921793 204921897 -22602681 - MIR SINE MIR -57 205 98 2195 128 0 3 chr3 204922519 204922824 -22601754 + AluSx SINE Alu 7 310 -2 2430 97 0 0 chr3 204922875 204923186 -22601392 + AluY SINE Alu 1 311 0 303 119 0 0 chr3 204923739 204923781 -22600797 - tRNA-Leu-TTG tRNA tRNA -44 42 1 244 270 16 0 chr3 204923788 204923851 -22600727 - Charlie8 DNA MER1_type -2199 218 155 24 0 0 0 chr3 204923888 204923912 -22600666 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 204923953 204923976 -22600602 + AT_rich Low_complexity Low_complexity 1 23 0 979 226 28 5 chr3 204923976 204924188 -22600390 - MIR SINE MIR -38 224 8 228 138 100 88 chr3 204924188 204924268 -22600310 - Charlie8 DNA MER1_type -2247 170 90 1501 205 73 6 chr3 204924455 204924761 -22599817 + L1MC4 LINE L1 6760 7093 -949 183 100 0 0 chr3 204924761 204924791 -22599787 + (TAAA)n Simple_repeat Simple_repeat 4 33 0 1501 205 73 6 chr3 204924791 204924826 -22599752 + L1MC4 LINE L1 7093 7124 -918 225 318 47 53 chr3 205124871 205125041 -22399537 - L2 LINE L2 -2 3311 3143 623 261 91 21 chr3 205126864 205127801 -22396777 + L1ME3A LINE L1 5103 6161 -9 21 0 0 0 chr3 205129111 205129132 -22395446 + AT_rich Low_complexity Low_complexity 1 21 0 384 278 113 45 chr3 205129211 205129477 -22395101 + L1ME4a LINE L1 5639 5922 -199 29 28 0 0 chr3 205129708 205129744 -22394834 + AT_rich Low_complexity Low_complexity 1 36 0 193 323 271 7 chr3 205129858 205130013 -22394565 - MIR SINE MIR -36 226 31 288 311 119 17 chr3 205130920 205131097 -22393481 - MIR SINE MIR -12 250 56 940 253 130 39 chr3 205131108 205131523 -22393055 + LTR33A LTR ERVL 7 459 -64 620 270 27 22 chr3 205132413 205132598 -22391980 - L2 LINE L2 0 3313 3128 2899 263 83 16 chr3 205132671 205133017 -22391561 + L2 LINE L2 1366 1687 -1627 2220 124 0 0 chr3 205133017 205133323 -22391255 - AluSx SINE Alu -6 306 1 2899 263 83 16 chr3 205133323 205133962 -22390616 + L2 LINE L2 1687 2417 -897 312 361 102 30 chr3 205134082 205134414 -22390164 - L2 LINE L2 -654 2660 2305 1549 217 21 27 chr3 205135773 205136053 -22388525 - MER77 LTR ERV1 -8 597 318 3210 60 22 40 chr3 205136053 205136311 -22388267 - MLT2A1 LTR ERVL 0 444 196 2066 111 3 32 chr3 205136311 205136627 -22387951 - AluSc SINE Alu -2 307 1 3210 60 22 40 chr3 205136627 205136820 -22387758 - MLT2A1 LTR ERVL -248 196 1 1549 217 21 27 chr3 205136820 205136875 -22387703 - MER77 LTR ERV1 -287 318 264 337 200 0 139 chr3 205136897 205137012 -22387566 - MER77 LTR ERV1 -309 296 198 236 301 0 19 chr3 205137626 205137783 -22386795 + A-rich Low_complexity Low_complexity 1 153 0 1034 212 0 5 chr3 205140916 205141109 -22383469 - MER77 LTR ERV1 -410 195 4 227 141 28 56 chr3 205141190 205141261 -22383317 + T-rich Low_complexity Low_complexity 4 72 0 2114 99 35 3 chr3 205141924 205142206 -22382372 - AluSx SINE Alu -17 295 5 378 250 57 16 chr3 205142302 205142426 -22382152 + MLT1I LTR MaLR 276 404 -5 224 388 52 0 chr3 205142430 205142564 -22382014 + MIR3 SINE MIR 47 187 -21 198 214 369 10 chr3 205142577 205142680 -22381898 + MIR SINE MIR 15 154 -108 216 282 106 24 chr3 205144030 205144115 -22380463 - L2 LINE L2 -4 3268 3177 197 213 0 85 chr3 205147191 205147238 -22377340 + L2 LINE L2 3221 3263 -9 356 210 160 25 chr3 205147386 205147505 -22377073 - L2 LINE L2 0 3272 3138 1105 114 0 27 chr3 205147533 205147717 -22376861 - L1P LINE L1 -3066 3080 2902 3889 70 10 2 chr3 205147717 205148233 -22376345 + L1PA8 LINE L1 5653 6172 0 29 0 0 0 chr3 205148233 205148262 -22376316 + AT_rich Low_complexity Low_complexity 1 29 0 208 276 17 0 chr3 205148322 205148380 -22376198 - L2 LINE L2 -199 3073 3015 698 284 170 15 chr3 205148450 205148851 -22375727 + L1MC4a LINE L1 6284 6746 -1062 * 817 174 61 138 chr3 205148846 205149207 -22375371 + L1MC4 LINE L1 6896 7228 -814 22 35 0 0 chr3 205149546 205149575 -22375003 + AT_rich Low_complexity Low_complexity 1 29 0 1886 119 19 13 chr3 205149691 205150001 -22374577 - L1PA13 LINE L1 -2 6161 5850 1954 145 3 3 chr3 205150042 205150346 -22374232 - AluJb SINE Alu -8 304 1 209 370 55 24 chr3 205151203 205151330 -22373248 - L2 LINE L2 0 3272 3142 868 330 54 19 chr3 205151336 205151760 -22372818 + MLT1J2 LTR MaLR 11 449 -1 460 317 134 36 chr3 205152302 205152526 -22372052 + MIR SINE MIR 12 257 -5 205 373 161 12 chr3 205153017 205153339 -22371239 + L2 LINE L2 2605 2974 -340 413 263 38 30 chr3 205153683 205153816 -22370762 + MIR SINE MIR 66 199 -63 22 0 0 0 chr3 205153827 205153849 -22370729 + AT_rich Low_complexity Low_complexity 1 22 0 207 196 22 0 chr3 205154155 205154201 -22370377 + CT-rich Low_complexity Low_complexity 2 48 0 342 242 15 68 chr3 205154634 205154701 -22369877 + L1ME3A LINE L1 5742 5800 -370 967 214 11 0 chr3 205154701 205154888 -22369690 + MER5A DNA MER1_type 1 189 0 342 242 15 68 chr3 205154888 205154952 -22369626 + L1ME3A LINE L1 5800 5866 -304 * 523 176 0 109 chr3 205154936 205155101 -22369477 + L1ME3A LINE L1 5820 5966 -204 334 206 6 0 chr3 205155125 205155195 -22369383 - MER45 DNA AcHobo -5 1576 102 24 0 0 0 chr3 205156517 205156541 -22368037 + AT_rich Low_complexity Low_complexity 1 24 0 2856 111 48 2 chr3 205156890 205157348 -22367230 - L1MA5A LINE L1 -3 6294 5816 843 76 0 0 chr3 205157358 205157463 -22367115 + AluSc SINE Alu 1 105 -204 11247 160 40 7 chr3 205157538 205157828 -22366750 - L1MA5A LINE L1 -511 5786 5507 234 0 0 0 chr3 205157828 205157854 -22366724 + (TTG)n Simple_repeat Simple_repeat 2 27 0 11247 160 40 7 chr3 205157854 205160239 -22364339 - L1MA5A LINE L1 -790 5507 3022 31 44 0 0 chr3 205160872 205160917 -22363661 + AT_rich Low_complexity Low_complexity 1 45 0 35 41 0 0 chr3 205161090 205161139 -22363439 + AT_rich Low_complexity Low_complexity 1 49 0 2614 92 42 0 chr3 205161362 205161722 -22362856 - THE1C LTR MaLR 0 375 1 316 278 66 20 chr3 205161979 205162130 -22362448 - L1MC4 LINE L1 -1096 6946 6789 645 277 71 40 chr3 205162147 205162540 -22362038 + LTR16C LTR ERVL 24 486 -5 1831 118 8 4 chr3 205162568 205162830 -22361748 + AluSq SINE Alu 25 287 -26 660 150 18 0 chr3 205162951 205163064 -22361514 + MSTA LTR MaLR 314 428 0 1410 287 108 53 chr3 205163999 205164463 -22360115 + HAL1 LINE L1 391 828 -1679 2117 129 0 0 chr3 205164463 205164757 -22359821 + AluSq SINE Alu 1 294 -19 1410 287 108 53 chr3 205164757 205165343 -22359235 + HAL1 LINE L1 828 1498 -1009 869 259 57 12 chr3 205165343 205165590 -22358988 + MIR SINE MIR 4 261 -1 2122 261 66 50 chr3 205165593 205166584 -22357994 + HAL1 LINE L1 1499 2504 -3 22 35 0 0 chr3 205166594 205166623 -22357955 + AT_rich Low_complexity Low_complexity 1 29 0 4529 191 72 8 chr3 205166623 205166898 -22357680 + L1PA3 LINE L1 4125 4381 -1785 342 0 0 0 chr3 205166898 205166936 -22357642 + (CA)n Simple_repeat Simple_repeat 2 39 0 4529 191 72 8 chr3 205166936 205167057 -22357521 + L1PA3 LINE L1 4381 4493 -1673 8377 34 5 0 chr3 205167057 205168887 -22355691 + L1PA3 LINE L1 4356 6186 0 4529 191 72 8 chr3 205168887 205170037 -22354541 + L1PA3 LINE L1 4493 5772 -394 535 301 43 46 chr3 205170056 205170401 -22354177 - L1ME LINE L1 -299 5822 5479 216 326 101 0 chr3 205170830 205170919 -22353659 - L2 LINE L2 -6 3266 3169 272 330 100 10 chr3 205172030 205172130 -22352448 + MIR SINE MIR 39 147 -61 279 316 0 0 chr3 205172138 205172217 -22352361 + MLT1F1 LTR MaLR 47 125 -442 913 196 105 13 chr3 205172217 205172446 -22352132 + L1MC3 LINE L1 7190 7439 -346 650 314 112 10 chr3 205172544 205172847 -22351731 + MLT1I LTR MaLR 68 401 -8 2145 156 17 0 chr3 205175022 205175382 -22349196 - MER47A DNA MER2_type 0 366 1 14801 160 33 17 chr3 205175719 205175815 -22348763 - L1MA1 LINE L1 -7 7714 7621 2759 32 0 0 chr3 205175815 205176123 -22348455 + AluY SINE Alu 1 308 -3 14801 160 33 17 chr3 205176123 205178106 -22346472 - L1MA1 LINE L1 -100 7621 5672 1936 151 3 3 chr3 205178106 205178410 -22346168 - AluSg SINE Alu -6 304 1 14801 160 33 17 chr3 205178410 205179718 -22344860 - L1MA1 LINE L1 -2049 5672 4387 1769 146 63 28 chr3 205179718 205180080 -22344498 + THE1C LTR MaLR 1 375 0 14801 160 33 17 chr3 205180080 205181377 -22343201 - L1MA1 LINE L1 -3334 4387 3113 582 27 0 0 chr3 205181377 205181452 -22343126 - L1PA3 LINE L1 0 6155 6081 14801 160 33 17 chr3 205181452 205182645 -22341933 - L1MA1 LINE L1 -4608 3113 1733 1727 198 34 78 chr3 205182629 205183039 -22341539 - L1MA1 LINE L1 -6671 894 503 * 950 162 191 102 chr3 205183166 205183549 -22341029 + MSTC LTR MaLR 1 417 -11 207 291 35 47 chr3 205184690 205184829 -22339749 - MIR SINE MIR -64 144 11 317 309 146 22 chr3 205184846 205185024 -22339554 + MIR SINE MIR 60 259 -3 268 301 36 24 chr3 205185839 205185922 -22338656 - L2 LINE L2 0 3272 3189 400 286 88 11 chr3 205187384 205187566 -22337012 - MER117 DNA MER1_type 0 197 2 5276 146 26 56 chr3 205187610 205188723 -22335855 - L1MA10 LINE L1 -7 6327 5249 344 297 10 0 chr3 205188723 205188824 -22335754 + MER117 DNA MER1_type 96 197 0 21 36 0 0 chr3 205188920 205188948 -22335630 + AT_rich Low_complexity Low_complexity 1 28 0 297 332 57 14 chr3 205190364 205190575 -22334003 + HAL1 LINE L1 2282 2501 -6 225 94 0 0 chr3 205190578 205190610 -22333968 + (GA)n Simple_repeat Simple_repeat 1 32 0 201 176 0 0 chr3 205192055 205192089 -22332489 + T-rich Low_complexity Low_complexity 1 34 0 551 239 45 107 chr3 205192093 205192336 -22332242 + MER102a DNA MER1_type 87 314 -16 1307 242 56 45 chr3 205192620 205193082 -22331496 - MLT1C LTR MaLR 0 467 1 196 191 0 138 chr3 205193234 205193328 -22331250 + L3b LINE CR1 1286 1366 -217 655 165 0 75 chr3 205193467 205193600 -22330978 - MER63 DNA MER1_type -313 749 1 453 201 95 39 chr3 205194196 205194375 -22330203 - L1MB8 LINE L1 -42 6136 5948 2096 131 7 0 chr3 205194824 205195129 -22329449 + AluSx SINE Alu 6 312 0 406 239 102 48 chr3 205195335 205195502 -22329076 - L2 LINE L2 -4 3309 3134 657 267 48 21 chr3 205196486 205196680 -22327898 + MIR SINE MIR 51 249 -13 1385 194 34 92 chr3 205197107 205197167 -22327411 + MLT1A1 LTR MaLR 6 68 -297 451 57 0 14 chr3 205197167 205197237 -22327341 + L1PA4 LINE L1 6085 6153 -2 1385 194 34 92 chr3 205197237 205197558 -22327020 + MLT1A1 LTR MaLR 68 365 0 765 211 64 5 chr3 205197847 205198041 -22326537 - MER69 DNA AcHobo 0 2526 2318 378 61 0 0 chr3 205198041 205198090 -22326488 + (CA)n Simple_repeat Simple_repeat 2 50 0 10230 226 31 11 chr3 205198100 205198288 -22326290 - L1MC1 LINE L1 -184 6429 6246 4072 60 2 2 chr3 205198288 205198807 -22325771 - L1PA7 LINE L1 -1 6153 5635 10230 226 31 11 chr3 205198807 205202047 -22322531 - L1MC1 LINE L1 -367 6246 2865 7437 159 35 70 chr3 205202042 205203162 -22321416 - L1MC1 LINE L1 -4760 1666 625 * 1991 144 96 18 chr3 205203162 205203559 -22321019 - MSTA LTR MaLR 0 428 1 7437 159 35 70 chr3 205203559 205204130 -22320448 - L1MC1 LINE L1 -5801 625 35 435 233 42 0 chr3 205204130 205204250 -22320328 - MER69 DNA AcHobo -182 2344 2220 8304 159 11 28 chr3 205204261 205205770 -22318808 + L1P LINE L1 12 1495 -4651 2393 191 35 20 chr3 205206243 205206793 -22317785 - L1MB4 LINE L1 -1 6179 5622 1317 167 50 57 chr3 205206814 205207221 -22317357 - L1MB4 LINE L1 -632 5548 5152 4323 20 8 0 chr3 205208465 205208974 -22315604 - L1PA3 LINE L1 -383 5772 5260 3275 26 0 0 chr3 205208974 205209354 -22315224 + L1PA3 LINE L1 5772 6153 -2 202 188 0 0 chr3 205209794 205209826 -22314752 + (TG)n Simple_repeat Simple_repeat 1 32 0 491 167 111 9 chr3 205210327 205210435 -22314143 + L2 LINE L2 3195 3313 0 215 381 144 6 chr3 205210885 205211058 -22313520 - MIR SINE MIR -38 224 28 590 226 24 60 chr3 205211981 205212149 -22312429 - MIR SINE MIR -81 181 20 262 227 102 47 chr3 205212344 205212472 -22312106 - L1ME3A LINE L1 -7 6163 6029 310 335 53 20 chr3 205213340 205213492 -22311086 + L1M4b LINE L1 1292 1448 -5411 472 269 99 47 chr3 205213592 205213845 -22310733 + L1M4b LINE L1 1708 1973 -4986 22 70 0 0 chr3 205213957 205214000 -22310578 + AT_rich Low_complexity Low_complexity 1 43 0 407 319 97 49 chr3 205214199 205214425 -22310153 + MIR SINE MIR 26 262 0 258 138 15 92 chr3 205214894 205214959 -22309619 + MIR SINE MIR 130 189 -73 21 36 0 0 chr3 205215086 205215114 -22309464 + AT_rich Low_complexity Low_complexity 1 28 0 21 57 0 0 chr3 205215862 205215897 -22308681 + AT_rich Low_complexity Low_complexity 1 35 0 835 120 73 52 chr3 205215897 205216088 -22308490 - L1MA4 LINE L1 -5 6295 6101 395 314 78 85 chr3 205216094 205216766 -22307812 + L2 LINE L2 2599 3266 -6 1346 87 0 0 chr3 205216808 205216981 -22307597 + AluSg/x SINE Alu 137 309 -3 310 308 62 27 chr3 205217360 205217506 -22307072 + L2 LINE L2 3121 3271 -1 229 249 17 17 chr3 205217506 205217575 -22307003 + GA-rich Low_complexity Low_complexity 2 116 0 214 308 92 42 chr3 205217611 205217731 -22306847 - MIR SINE MIR -112 150 25 424 284 111 13 chr3 205218694 205219008 -22305570 + MLT1K LTR MaLR 194 560 -28 580 271 0 0 chr3 205219402 205219520 -22305058 - FLAM_A SINE Alu -12 121 4 433 371 56 72 chr3 205219853 205220423 -22304155 + L2 LINE L2 2715 3272 0 2199 126 0 0 chr3 205220757 205221067 -22303511 + AluSx SINE Alu 1 310 -2 558 163 0 0 chr3 205221212 205221298 -22303280 + AluSg/x SINE Alu 208 293 -19 1899 131 29 0 chr3 205221696 205221971 -22302607 - AluSq SINE Alu -30 283 1 515 226 105 11 chr3 205222014 205222195 -22302383 - Charlie7 DNA MER1_type -916 1696 1499 385 328 96 43 chr3 205222381 205222756 -22301822 + L1MC4a LINE L1 5006 5400 -746 474 326 49 13 chr3 205222812 205223198 -22301380 + L1MC4a LINE L1 5631 6030 -1778 204 386 151 26 chr3 205223660 205224051 -22300527 - L2 LINE L2 -5 3267 2828 306 252 277 17 chr3 205224104 205224223 -22300355 - MER5A DNA MER1_type -1 188 39 472 306 90 22 chr3 205224963 205225185 -22299393 - MIR SINE MIR -6 256 20 253 330 191 35 chr3 205225206 205225902 -22298676 - L2 LINE L2 -899 2415 1611 323 210 0 12 chr3 205226209 205226290 -22298288 + (TATATG)n Simple_repeat Simple_repeat 2 81 0 295 281 94 0 chr3 205227540 205227636 -22296942 + MER117 DNA MER1_type 28 132 -65 742 336 154 18 chr3 205228046 205228668 -22295910 + L2 LINE L2 1994 2700 -614 3247 272 91 41 chr3 205228672 205230075 -22294503 - L2 LINE L2 0 3313 1826 888 222 104 86 chr3 205230109 205230332 -22294246 + L1MC5 LINE L1 7299 7516 -445 494 261 15 30 chr3 205230332 205230466 -22294112 - MER94 DNA DNA 0 134 3 888 222 104 86 chr3 205230466 205230836 -22293742 + L1MC5 LINE L1 7516 7903 -58 460 234 82 121 chr3 205230845 205231076 -22293502 - L2 LINE L2 -1458 1856 1635 447 311 133 34 chr3 205231072 205231373 -22293205 + L2 LINE L2 2702 3030 -283 * 4158 250 108 33 chr3 205231384 205232727 -22291851 - L1MEc LINE L1 -1176 5039 3512 2004 99 60 0 chr3 205232727 205233009 -22291569 - AluSp SINE Alu -13 300 2 4158 250 108 33 chr3 205233009 205233563 -22291015 - L1MEc LINE L1 -2703 3512 3001 4545 268 92 20 chr3 205233565 205236145 -22288433 - L1MEc LINE L1 -3424 2791 37 381 267 67 39 chr3 205236285 205236540 -22288038 - L1M4 LINE L1 -745 5401 5140 288 260 163 13 chr3 205237019 205237246 -22287332 - L1ME4a LINE L1 -104 6017 5757 835 248 91 38 chr3 205237257 205237596 -22286982 - L1ME3A LINE L1 -5 6165 5809 342 217 120 0 chr3 205237609 205237701 -22286877 - L1ME3A LINE L1 -545 5621 5519 * 871 260 50 11 chr3 205237692 205237969 -22286609 - L1ME3A LINE L1 -863 5283 4996 286 214 78 39 chr3 205238012 205238115 -22286463 - L1ME4a LINE L1 -548 5573 5467 216 0 0 0 chr3 205238292 205238316 -22286262 + (T)n Simple_repeat Simple_repeat 1 24 0 299 251 105 68 chr3 205238319 205238660 -22285918 - MLT1J LTR MaLR -19 569 218 21 0 0 0 chr3 205239309 205239330 -22285248 + AT_rich Low_complexity Low_complexity 1 21 0 293 159 16 0 chr3 205239359 205239422 -22285156 + (TA)n Simple_repeat Simple_repeat 1 64 0 208 237 0 0 chr3 205240052 205240090 -22284488 + (CA)n Simple_repeat Simple_repeat 1 38 0 477 319 121 59 chr3 205240759 205241097 -22283481 + MLT1J LTR MaLR 115 473 -38 495 361 77 23 chr3 205241253 205241644 -22282934 + L2 LINE L2 2074 2485 -829 261 303 62 35 chr3 205243129 205243274 -22281304 + MIR SINE MIR 95 243 -19 1588 237 82 59 chr3 205243281 205243699 -22280879 - MLT1F LTR MaLR -3 527 92 2168 96 4 0 chr3 205243699 205244002 -22280576 + AluSx SINE Alu 1 304 0 1588 237 82 59 chr3 205244002 205244093 -22280485 - MLT1F LTR MaLR -438 92 5 294 148 0 0 chr3 205244233 205244287 -22280291 + (TC)n Simple_repeat Simple_repeat 2 55 0 285 100 0 0 chr3 205244287 205244337 -22280241 + (CA)n Simple_repeat Simple_repeat 1 50 0 708 93 0 9 chr3 205244392 205244500 -22280078 - L1MC3 LINE L1 -1 7784 7678 205 83 28 28 chr3 205245120 205245156 -22279422 - MIR SINE MIR -110 152 117 397 299 122 23 chr3 205245950 205246171 -22278407 - MIR SINE MIR -13 249 7 * 566 303 9 24 chr3 205246169 205246380 -22278198 + MIR SINE MIR 7 214 -48 576 293 98 19 chr3 205246597 205246863 -22277715 - LTR16C LTR ERVL -13 478 192 256 299 6 6 chr3 205247150 205247317 -22277261 + GA-rich Low_complexity Low_complexity 5 171 0 291 250 36 36 chr3 205247905 205247989 -22276589 + MIR3 SINE MIR 74 157 -51 513 257 75 28 chr3 205248033 205248247 -22276331 - Charlie8 DNA MER1_type -2152 265 42 202 358 130 14 chr3 205249342 205249557 -22275021 - L2 LINE L2 -2485 829 590 249 194 48 65 chr3 205249850 205249912 -22274666 + MIR SINE MIR 23 83 -179 1504 211 55 47 chr3 205249921 205250408 -22274170 - MER69 DNA AcHobo -36 2490 2000 * 1971 234 148 12 chr3 205250394 205250894 -22273684 - MER69 DNA AcHobo -1958 568 1 292 272 62 0 chr3 205250944 205251025 -22273553 + MIR SINE MIR 160 245 -17 25 31 0 0 chr3 205252014 205252046 -22272532 + AT_rich Low_complexity Low_complexity 1 32 0 656 309 160 13 chr3 205252438 205252820 -22271758 - LTR16A LTR ERVL 0 450 13 624 325 74 0 chr3 205253096 205253327 -22271251 - LTR16A LTR ERVL -200 250 3 23 0 0 0 chr3 205253438 205253461 -22271117 + AT_rich Low_complexity Low_complexity 1 23 0 2149 116 3 26 chr3 205253593 205253903 -22270675 + AluSx SINE Alu 2 304 -8 1110 219 4 21 chr3 205254671 205254908 -22269670 - AluJb SINE Alu -4 308 76 294 301 117 0 chr3 205254926 205255029 -22269549 + L2 LINE L2 3199 3313 0 1832 164 3 13 chr3 205255071 205255383 -22269195 - AluJb SINE Alu -3 309 1 498 325 36 6 chr3 205255460 205255626 -22268952 - MIR3 SINE MIR -8 200 30 683 295 178 42 chr3 205256538 205257375 -22267203 - L2 LINE L2 -43 3270 2312 333 280 46 57 chr3 205257891 205258066 -22266512 + MIR SINE MIR 13 185 -77 710 143 0 0 chr3 205258357 205258462 -22266116 - AluSx SINE Alu -14 295 191 973 129 7 0 chr3 205258463 205258602 -22265976 - AluSx SINE Alu -172 141 2 180 0 0 0 chr3 205258620 205258640 -22265938 + (A)n Simple_repeat Simple_repeat 1 20 0 1555 159 86 21 chr3 205258718 205259045 -22265533 + MSTB LTR MaLR 12 359 -67 1405 174 8 28 chr3 205259165 205259418 -22265160 - AluJb SINE Alu -64 248 1 2249 90 3 0 chr3 205259722 205260034 -22264544 - L1PA13 LINE L1 -4 6159 5847 24 0 0 0 chr3 205260140 205260164 -22264414 + AT_rich Low_complexity Low_complexity 1 24 0 316 363 158 21 chr3 205261377 205261617 -22262961 - L2 LINE L2 -5 3267 2995 206 118 0 0 chr3 205261883 205261917 -22262661 + (CA)n Simple_repeat Simple_repeat 2 35 0 1837 179 100 60 chr3 205262045 205262513 -22262065 + MLT2B1 LTR ERVL 1 487 -33 1245 193 24 79 chr3 205262603 205262936 -22261642 - Tigger7 DNA MER2_type -13 2478 2 231 164 0 66 chr3 205262953 205263014 -22261564 + MLT2B1 LTR ERVL 464 520 0 964 254 69 16 chr3 205263014 205263333 -22261245 + HERVL-B1 LTR ERVL 1 336 -5318 * 3322 176 14 2 chr3 205263329 205263887 -22260691 + ERVL LTR ERVL 3294 3858 -1906 259 218 18 0 chr3 205264021 205264076 -22260502 - L2 LINE L2 -21 3292 3237 330 256 67 78 chr3 205264079 205264259 -22260319 - MLT1J2 LTR MaLR -8 442 265 469 221 29 0 chr3 205264313 205264417 -22260161 - MLT1J1 LTR MaLR -338 108 2 325 246 119 0 chr3 205264417 205264543 -22260035 - L2 LINE L2 -70 3243 3103 720 121 81 27 chr3 205264574 205264723 -22259855 + MER104 DNA Tc2 3 159 -21 1874 197 5 22 chr3 205264725 205265096 -22259482 - MLT1A1 LTR MaLR 0 365 1 674 314 36 8 chr3 205265111 205265359 -22259219 - L2 LINE L2 -243 3070 2816 234 331 73 7 chr3 205265360 205265496 -22259082 + MIR SINE MIR 86 230 -32 34 55 0 0 chr3 205265812 205265867 -22258711 + AT_rich Low_complexity Low_complexity 1 55 0 705 153 0 0 chr3 205265869 205265980 -22258598 + FLAM_C SINE Alu 1 111 -32 289 317 77 0 chr3 205266051 205266155 -22258423 - MIR3 SINE MIR -16 192 81 351 278 0 70 chr3 205266678 205266793 -22257785 - MIR SINE MIR -85 123 17 311 247 12 12 chr3 205267714 205267799 -22256779 - MER94 DNA DNA -49 85 1 219 387 66 28 chr3 205267884 205267990 -22256588 - L2 LINE L2 -11 3261 3152 22 0 0 0 chr3 205268855 205268877 -22255701 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 205268943 205268970 -22255608 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr3 205269982 205270005 -22254573 + AT_rich Low_complexity Low_complexity 1 23 0 315 309 138 0 chr3 205270020 205270143 -22254435 - MIR SINE MIR -89 173 34 360 232 49 46 chr3 205271706 205271893 -22252685 + MLT1J1 LTR MaLR 263 446 0 182 311 0 49 chr3 205273239 205273300 -22251278 + L2 LINE L2 3239 3296 -17 211 170 0 38 chr3 205273952 205274005 -22250573 + A-rich Low_complexity Low_complexity 6 56 0 18851 63 7 1 chr3 205274130 205275973 -22248605 + L1PA6 LINE L1 2889 4765 -1389 207 0 0 0 chr3 205275973 205275996 -22248582 + (CTATA)n Simple_repeat Simple_repeat 1 23 0 18851 63 7 1 chr3 205275996 205277391 -22247187 + L1PA6 LINE L1 4765 6149 -5 780 208 174 34 chr3 205277411 205277762 -22246816 - MER69 DNA AcHobo -308 2218 1819 213 196 0 0 chr3 205277762 205277808 -22246770 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 1174 248 40 66 chr3 205277872 205277966 -22246612 - MER69 DNA AcHobo -2141 385 290 7649 22 3 1 chr3 205277966 205279461 -22245117 + L1PA3 LINE L1 4657 6152 -3 1174 248 40 66 chr3 205279461 205279761 -22244817 - MER69 DNA AcHobo -2236 290 1 1772 149 69 34 chr3 205279779 205280129 -22244449 + THE1C LTR MaLR 1 362 -13 185 261 14 72 chr3 205280171 205280240 -22244338 + L2 LINE L2 3244 3308 -5 192 77 0 0 chr3 205280410 205280436 -22244142 + (A)n Simple_repeat Simple_repeat 1 26 0 2677 32 3 0 chr3 205280730 205281038 -22243540 - AluY SINE Alu -2 309 1 912 294 107 24 chr3 205281456 205281868 -22242710 - MLT1J1 LTR MaLR 0 446 1 417 39 0 0 chr3 205282582 205282633 -22241945 + (CA)n Simple_repeat Simple_repeat 2 52 0 359 248 43 75 chr3 205283061 205283222 -22241356 - L2 LINE L2 -8 3305 3150 545 326 222 14 chr3 205283271 205283703 -22240875 - L2 LINE L2 -339 2975 2454 230 274 137 0 chr3 205283757 205283830 -22240748 - L2 LINE L2 0 3272 3190 212 333 117 39 chr3 205283842 205284073 -22240505 - L2 LINE L2 -700 2614 2366 444 302 28 66 chr3 205284099 205284254 -22240324 - MIR SINE MIR -10 252 106 1084 37 0 0 chr3 205284254 205284388 -22240190 + L1PA5 LINE L1 6021 6154 0 444 302 28 66 chr3 205284388 205284444 -22240134 - MIR SINE MIR -156 106 49 575 255 64 0 chr3 205284572 205284729 -22239849 + LTR16C LTR ERVL 325 491 0 232 298 36 24 chr3 205285452 205285536 -22239042 - MIR SINE MIR -67 141 57 32 0 0 0 chr3 205285543 205285575 -22239003 + AT_rich Low_complexity Low_complexity 1 32 0 309 176 44 0 chr3 205285580 205285648 -22238930 - L1PB4 LINE L1 -12 6144 6074 4661 48 0 0 chr3 205286856 205287442 -22237136 - L1P LINE L1 -951 5195 4610 6054 38 5 4 chr3 205287469 205288210 -22236368 + L1PA5 LINE L1 5413 6154 0 232 292 168 26 chr3 205288378 205288491 -22236087 - L2 LINE L2 -3 3269 3141 307 372 61 20 chr3 205288787 205288935 -22235643 + MIR3 SINE MIR 27 180 -28 294 292 91 25 chr3 205291041 205291232 -22233346 - MLT1L LTR MaLR -47 540 298 343 302 86 70 chr3 205292527 205292828 -22231750 - MLT1K LTR MaLR -158 430 125 249 57 0 0 chr3 205292905 205292940 -22231638 + (TAA)n Simple_repeat Simple_repeat 2 36 0 9902 94 3 12 chr3 205293264 205294723 -22229855 - L1M1 LINE L1 -3676 3889 2443 447 193 33 160 chr3 205295087 205295237 -22229341 - L1M1 LINE L1 -6756 809 679 337 271 181 12 chr3 205295631 205295797 -22228781 - MIR SINE MIR -49 213 20 299 279 25 0 chr3 205295984 205296063 -22228515 - L2 LINE L2 0 3313 3233 2260 111 3 0 chr3 205296842 205297148 -22227430 + AluSx SINE Alu 1 307 -5 204 40 0 0 chr3 205298370 205298395 -22226183 + (CATGC)n Simple_repeat Simple_repeat 4 28 0 25 31 0 0 chr3 205298933 205298965 -22225613 + AT_rich Low_complexity Low_complexity 1 32 0 22 35 0 0 chr3 205299937 205299966 -22224612 + AT_rich Low_complexity Low_complexity 1 29 0 2374 219 0 5 chr3 205300627 205301071 -22223507 - MER82 DNA MER2_type -9 644 203 556 275 7 14 chr3 205301550 205301692 -22222886 - MER82 DNA MER2_type -511 142 2 246 316 0 0 chr3 205302028 205302107 -22222471 + L1MC4 LINE L1 6621 6699 -1343 748 231 64 126 chr3 205302148 205302490 -22222088 - MLT1A1 LTR MaLR -24 341 21 1908 264 100 66 chr3 205302900 205303779 -22220799 - L2 LINE L2 -963 2351 1443 327 291 104 17 chr3 205304028 205304269 -22220309 + L1M4 LINE L1 3625 3886 -2260 386 277 38 66 chr3 205304461 205305036 -22219542 + L1M4 LINE L1 3952 4629 -1517 1791 214 41 43 chr3 205305578 205306064 -22218514 + MLT1D LTR MaLR 21 505 0 2517 56 0 0 chr3 205307145 205307451 -22217127 + AluY SINE Alu 2 307 -4 25 37 0 37 chr3 205308037 205308068 -22216510 + AT_rich Low_complexity Low_complexity 1 31 -21 2236 100 10 0 chr3 205308068 205308369 -22216209 + AluSx SINE Alu 1 304 -8 25 37 0 37 chr3 205308369 205308391 -22216187 + AT_rich Low_complexity Low_complexity 31 52 0 850 104 28 28 chr3 205308469 205308613 -22215965 - L1MB1 LINE L1 -17 6172 6029 994 168 0 12 chr3 205308615 205308782 -22215796 - AluSp SINE Alu -2 311 147 261 0 0 0 chr3 205308798 205308827 -22215751 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 7704 26 0 0 chr3 205309319 205310405 -22214173 - L1PA3 LINE L1 -1 6154 5068 22778 31 1 0 chr3 205310405 205313156 -22211422 + L1PA3 LINE L1 2315 5068 -1078 625 343 44 44 chr3 205313309 205313738 -22210840 + MLT1K LTR MaLR 151 579 -9 2799 3 0 0 chr3 205314629 205314930 -22209648 + AluYa5 SINE Alu 1 301 -10 1835 203 18 40 chr3 205315649 205316102 -22208476 - LTR47B LTR ERVL 0 443 1 560 160 35 112 chr3 205316496 205316665 -22207913 - MIR SINE MIR -11 251 96 186 295 33 0 chr3 205416777 205416838 -22107740 + L2 LINE L2 3209 3271 -1 422 261 45 70 chr3 205417038 205417195 -22107383 - MIR SINE MIR -98 164 12 180 308 77 0 chr3 205417356 205417421 -22107157 + MIR SINE MIR 2 71 -191 274 182 0 15 chr3 205417447 205417513 -22107065 + MLT1F LTR MaLR 478 542 0 1443 107 9 54 chr3 205420145 205420369 -22104209 - AluSg/x SINE Alu -12 300 87 4000 231 33 15 chr3 205420374 205421323 -22103255 + Charlie1a DNA MER1_type 1 966 -489 1989 94 8 0 chr3 205421333 205421588 -22102990 + AluSq SINE Alu 5 261 -52 237 108 0 0 chr3 205421588 205421625 -22102953 + (CAGGA)n Simple_repeat Simple_repeat 4 40 0 1917 100 64 4 chr3 205422036 205422316 -22102262 - AluSx SINE Alu -15 297 1 543 301 12 0 chr3 205422782 205422945 -22101633 - MIR3 SINE MIR -6 202 38 11788 200 27 29 chr3 205424210 205427215 -22097363 + L1PA12 LINE L1 2525 5564 -604 284 104 62 0 chr3 205427215 205427263 -22097315 - MADE1 DNA Mariner -2 78 28 3727 133 14 6 chr3 205427243 205427867 -22096711 + L1PA16 LINE L1 5536 6164 -2 11788 200 27 29 chr3 205427263 205427867 -22096711 + L1PA12 LINE L1 5564 6168 0 1744 124 4 0 chr3 205428003 205428237 -22096341 + AluSq SINE Alu 1 235 -78 1300 194 130 0 chr3 205428237 205428490 -22096088 + AluJo SINE Alu 4 289 -13 249 108 0 0 chr3 205428499 205428536 -22096042 + (TG)n Simple_repeat Simple_repeat 2 38 0 8399 207 113 48 chr3 205428706 205432650 -22091928 - L1MA8 LINE L1 -3 7309 3622 2044 134 0 17 chr3 205432650 205432941 -22091637 - AluSq SINE Alu -27 286 1 8399 207 113 48 chr3 205432941 205432966 -22091612 - L1MA8 LINE L1 -3690 3622 3600 2233 116 3 3 chr3 205432966 205433276 -22091302 - AluSg SINE Alu 0 310 1 8399 207 113 48 chr3 205433276 205434454 -22090124 - L1MA8 LINE L1 -3712 3600 2032 2276 112 0 13 chr3 205434454 205434768 -22089810 + AluSq SINE Alu 1 310 -3 8399 207 113 48 chr3 205434768 205435285 -22089293 - L1MA8 LINE L1 -5280 2032 1550 1987 150 10 0 chr3 205436814 205437108 -22087470 + AluSx SINE Alu 1 297 -15 30 0 0 0 chr3 205437343 205437373 -22087205 + AT_rich Low_complexity Low_complexity 1 30 0 450 259 0 0 chr3 205437630 205437715 -22086863 - MER91A DNA MER1_type -95 101 17 296 325 171 8 chr3 205437852 205438203 -22086375 + L1ME4a LINE L1 5512 5919 -202 2224 131 19 3 chr3 205438217 205438577 -22086001 + MER47A DNA MER2_type 1 366 0 226 250 0 0 chr3 205438605 205438661 -22085917 + L1ME4a LINE L1 5986 6041 -80 423 233 0 10 chr3 205438962 205439065 -22085513 + L1MEc LINE L1 40 141 -6255 4905 149 43 37 chr3 205439082 205439437 -22085141 - L1MA9 LINE L1 -3 6309 5957 2238 101 3 7 chr3 205439437 205439745 -22084833 - AluY SINE Alu -4 307 1 4905 149 43 37 chr3 205439745 205440018 -22084560 - L1MA9 LINE L1 -355 5957 5687 2023 143 0 17 chr3 205440018 205440319 -22084259 - AluSx SINE Alu -16 296 1 4905 149 43 37 chr3 205440319 205440840 -22083738 - L1MA9 LINE L1 -625 5687 5148 229 325 0 0 chr3 205440842 205440925 -22083653 + L1MEc LINE L1 126 208 -6188 647 122 0 0 chr3 205440946 205441036 -22083542 + AluS SINE Alu 1 90 -222 4747 246 63 32 chr3 205441036 205441463 -22083115 + L1MEc LINE L1 326 738 -5658 385 122 0 112 chr3 205441463 205441561 -22083017 + L1PA10 LINE L1 6081 6167 -1 4747 246 63 32 chr3 205441561 205442467 -22082111 + L1MEc LINE L1 738 1740 -4656 2375 91 3 0 chr3 205442467 205442764 -22081814 + AluSp SINE Alu 1 298 -15 4747 246 63 32 chr3 205442764 205443352 -22081226 + L1MEc LINE L1 1740 2308 -4088 519 368 98 47 chr3 205443352 205443501 -22081077 + L1M2 LINE L1 20 160 -6689 1574 211 30 0 chr3 205443501 205443804 -22080774 + AluJo SINE Alu 1 312 0 519 368 98 47 chr3 205443804 205444203 -22080375 + L1M2 LINE L1 160 596 -6253 340 393 16 4 chr3 205444385 205444627 -22079951 + L1PA16 LINE L1 762 1006 -5844 7554 232 37 94 chr3 205444891 205445175 -22079403 + L1PA16 LINE L1 1264 1563 -5306 1877 168 0 9 chr3 205445175 205445490 -22079088 + AluJb SINE Alu 1 312 0 7554 232 37 94 chr3 205445490 205445992 -22078586 + L1PA16 LINE L1 1563 2092 -4777 2335 108 7 0 chr3 205445992 205446299 -22078279 + AluY SINE Alu 1 309 -2 7554 232 37 94 chr3 205446299 205447760 -22076818 + L1PA16 LINE L1 2092 3635 -3234 2039 119 0 0 chr3 205447760 205448029 -22076549 + AluSx SINE Alu 5 273 -39 7554 232 37 94 chr3 205448029 205448414 -22076164 + L1PA16 LINE L1 3635 4041 -2828 2017 153 0 0 chr3 205448414 205448715 -22075863 + AluSx SINE Alu 1 301 -11 7554 232 37 94 chr3 205448715 205449842 -22074736 + L1PA16 LINE L1 4041 5231 -1638 1143 119 0 0 chr3 205449842 205450018 -22074560 + (GGAA)n Simple_repeat Simple_repeat 4 179 0 7554 232 37 94 chr3 205450018 205452230 -22072348 + L1PA16 LINE L1 5231 6862 -7 580 300 44 4 chr3 205452238 205452511 -22072067 + L1ME LINE L1 2178 2461 -3685 228 192 0 0 chr3 205452553 205452605 -22071973 + L1ME LINE L1 2436 2487 -3659 603 232 21 11 chr3 205452648 205452838 -22071740 + L1ME LINE L1 2475 2666 -3480 822 142 6 56 chr3 205452859 205453021 -22071557 + FRAM SINE Alu 22 175 -1 1567 249 53 24 chr3 205453026 205453637 -22070941 + L1ME LINE L1 2683 3320 -2826 2217 119 17 0 chr3 205453637 205453932 -22070646 + AluSx SINE Alu 1 300 -12 1567 249 53 24 chr3 205453932 205454043 -22070535 + L1ME LINE L1 3320 3426 -2720 213 39 0 0 chr3 205454191 205454217 -22070361 + (T)n Simple_repeat Simple_repeat 1 26 0 346 274 136 10 chr3 205454471 205454778 -22069800 + L1ME LINE L1 5265 5604 -517 3541 206 25 19 chr3 205454788 205455760 -22068818 + L1MB8 LINE L1 3872 4849 -1297 830 239 0 0 chr3 205455766 205455921 -22068657 - FRAM SINE Alu -10 156 2 1229 147 0 0 chr3 205455932 205456109 -22068469 - AluJb SINE Alu -2 310 134 1737 144 19 60 chr3 205456109 205456428 -22068150 - AluJo SINE Alu -6 306 1 3089 192 27 37 chr3 205456430 205457735 -22066843 + L1MB8 LINE L1 4847 6076 -102 699 250 150 20 chr3 205457929 205458374 -22066204 - LTR1B LTR ERV1 -38 1240 10 2235 187 73 6 chr3 205458374 205458910 -22065668 - HUERS-P2 LTR ERV1 -13 3075 2468 3478 188 27 21 chr3 205458911 205459640 -22064938 - HUERS-P2 LTR ERV1 -1708 1380 647 445 232 7 70 chr3 205459642 205459784 -22064794 - HUERS-P2 LTR ERV1 -2954 134 2 441 248 50 14 chr3 205460008 205460149 -22064429 - LTR28 LTR ERV1 -470 550 405 519 237 132 12 chr3 205460191 205460386 -22064192 - LTR1 LTR ERV1 -564 221 28 521 180 20 0 chr3 205460387 205460487 -22064091 + L1MB8 LINE L1 6071 6172 -6 244 353 0 53 chr3 205460699 205460849 -22063729 - MLT1K LTR MaLR -340 248 107 197 303 115 55 chr3 205460859 205461024 -22063554 - L2 LINE L2 -1527 1787 1613 2180 108 3 7 chr3 205461241 205461538 -22063040 - AluSx SINE Alu -16 296 1 2124 121 3 0 chr3 205462198 205462496 -22062082 + AluSp SINE Alu 1 299 -14 363 192 0 0 chr3 205462496 205462569 -22062009 + GA-rich Low_complexity Low_complexity 3 75 0 26 30 0 0 chr3 205462681 205462714 -22061864 + AT_rich Low_complexity Low_complexity 1 33 0 2342 107 0 0 chr3 205463179 205463487 -22061091 - AluSp SINE Alu -5 308 1 2288 98 3 13 chr3 205463494 205463809 -22060769 - AluSx SINE Alu 0 312 1 398 187 71 31 chr3 205463848 205463981 -22060597 - L1MC/D LINE L1 -516 5828 5693 379 193 9 9 chr3 205464291 205464400 -22060178 + CT-rich Low_complexity Low_complexity 4 112 0 2248 117 3 3 chr3 205464507 205464816 -22059762 + AluSq SINE Alu 1 309 -4 24 32 0 0 chr3 205465739 205465770 -22058808 + AT_rich Low_complexity Low_complexity 1 31 0 342 179 35 118 chr3 205466254 205466382 -22058196 - MIR SINE MIR -45 163 41 4723 73 41 1 chr3 205466495 205467151 -22057427 + L1PB1 LINE L1 5463 6144 -7 1900 187 0 0 chr3 205467387 205467697 -22056881 - AluJb SINE Alu -2 310 1 22 56 0 0 chr3 205467698 205467734 -22056844 + AT_rich Low_complexity Low_complexity 1 36 0 331 248 109 20 chr3 205467757 205467858 -22056720 - L2 LINE L2 -10 3303 3194 186 43 0 0 chr3 205467990 205468013 -22056565 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 22 0 0 0 chr3 205468212 205468234 -22056344 + AT_rich Low_complexity Low_complexity 1 22 0 1045 141 0 0 chr3 205468234 205468383 -22056195 - AluSg/x SINE Alu -26 286 138 234 0 0 0 chr3 205468571 205468597 -22055981 + (A)n Simple_repeat Simple_repeat 1 26 0 1899 125 27 0 chr3 205468607 205468902 -22055676 + AluSx SINE Alu 5 307 -5 2646 144 6 69 chr3 205468902 205469436 -22055142 + LTR9 LTR ERV1 113 612 0 225 172 125 31 chr3 205469439 205469503 -22055075 - HAL1 LINE L1 -371 2136 2067 2178 88 4 0 chr3 205469548 205469821 -22054757 - AluSp SINE Alu -39 274 1 380 290 85 35 chr3 205469929 205470129 -22054449 - HAL1 LINE L1 -582 1925 1716 429 111 44 44 chr3 205470129 205470264 -22054314 + CT-rich Low_complexity Low_complexity 5 139 0 1748 131 52 64 chr3 205470351 205470770 -22053808 + LTR37A LTR ERV1 13 426 0 268 204 0 0 chr3 205470804 205470858 -22053720 - HAL1 LINE L1 -883 1624 1571 182 81 194 65 chr3 205471191 205471253 -22053325 - L3 LINE CR1 -636 941 872 2264 102 0 13 chr3 205471490 205471803 -22052775 + AluSx SINE Alu 1 309 -3 284 73 0 0 chr3 205471943 205471984 -22052594 + Alu SINE Alu 1 41 -267 599 88 0 0 chr3 205471984 205472064 -22052514 + AluSg/x SINE Alu 215 294 -18 1967 141 13 16 chr3 205473112 205473424 -22051154 + AluSq SINE Alu 1 311 -2 1515 187 40 15 chr3 205473644 205474040 -22050538 - L1 LINE L1 -2391 5174 4769 1803 138 48 6 chr3 205474040 205474352 -22050226 + THE1B LTR MaLR 1 325 -39 980 95 0 29 chr3 205474355 205474492 -22050086 - AluSq/x SINE Alu -180 133 1 265 128 0 0 chr3 205474495 205474534 -22050044 + THE1B LTR MaLR 317 355 0 295 41 41 0 chr3 205474555 205474604 -22049974 + (TTG)n Simple_repeat Simple_repeat 1 51 0 1838 153 11 0 chr3 205474610 205474885 -22049693 - AluSx SINE Alu -30 282 5 4142 212 67 18 chr3 205474890 205476407 -22048171 - L1 LINE L1 -2808 4757 3165 3515 117 53 22 chr3 205476413 205477053 -22047525 + L1PB1 LINE L1 1413 2072 -4791 1969 220 85 0 chr3 205477040 205477536 -22047042 + L1PB1 LINE L1 4221 4758 -2104 * 683 182 20 0 chr3 205477582 205477730 -22046848 + L1MA7 LINE L1 4517 4667 -1479 * 5928 149 10 11 chr3 205477725 205479834 -22044744 + L1PB1 LINE L1 4762 6867 0 27 0 0 0 chr3 205480322 205480349 -22044229 + AT_rich Low_complexity Low_complexity 1 27 0 4015 167 44 22 chr3 205480375 205480723 -22043855 + L1MA7 LINE L1 5414 5753 -538 2162 113 0 7 chr3 205480723 205481016 -22043562 - AluSg SINE Alu -19 291 1 4015 167 44 22 chr3 205481016 205481037 -22043541 + L1MA7 LINE L1 5753 5772 -519 351 0 0 0 chr3 205481037 205481076 -22043502 + (CA)n Simple_repeat Simple_repeat 2 40 0 4015 167 44 22 chr3 205481076 205481560 -22043018 + L1MA7 LINE L1 5772 6287 -4 22 20 6 0 chr3 205482135 205482195 -22042383 + AT_rich Low_complexity Low_complexity 1 29 0 667 254 65 18 chr3 205482448 205482617 -22041961 + MER91B DNA MER1_type 14 190 0 210 265 44 29 chr3 205482625 205482693 -22041885 + L3 LINE CR1 324 392 -1185 211 315 55 0 chr3 205482771 205482844 -22041734 + MIR SINE MIR 2 78 -184 395 284 70 10 chr3 205482872 205483073 -22041505 + L1ME LINE L1 5566 5778 -343 319 375 0 0 chr3 205483087 205483191 -22041387 - L2 LINE L2 0 3272 3169 23 0 0 0 chr3 205483408 205483431 -22041147 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 205483922 205483944 -22040634 + AT_rich Low_complexity Low_complexity 1 22 0 317 298 50 71 chr3 205484707 205484945 -22039633 + L2 LINE L2 1928 2160 -1154 550 250 92 12 chr3 205484950 205485114 -22039464 + MIR SINE MIR 37 213 -49 937 143 8 0 chr3 205485114 205485247 -22039331 + AluSq/x SINE Alu 1 134 -179 596 219 32 110 chr3 205485414 205485660 -22038918 + L2 LINE L2 2209 2435 -879 44 35 0 0 chr3 205485680 205485738 -22038840 + AT_rich Low_complexity Low_complexity 1 58 0 522 200 47 74 chr3 205485743 205485933 -22038645 - L1MC5 LINE L1 -109 7852 7668 227 227 133 31 chr3 205485959 205486087 -22038491 - L1MC5 LINE L1 -389 7572 7432 1081 223 46 61 chr3 205486089 205486501 -22038077 - L1MC5 LINE L1 -585 7376 6971 1970 122 4 11 chr3 205486505 205486784 -22037794 - AluSx SINE Alu -14 298 22 560 318 54 16 chr3 205486786 205487044 -22037534 - L1MC4a LINE L1 -929 6879 6612 2302 71 4 0 chr3 205487047 205487355 -22037223 - AluY SINE Alu 0 309 1 25 51 0 0 chr3 205487388 205487427 -22037151 + AT_rich Low_complexity Low_complexity 1 39 0 4846 143 12 8 chr3 205487427 205488290 -22036288 - L1PA15 LINE L1 0 6165 5300 239 54 27 0 chr3 205488757 205488794 -22035784 + (CAAAAA)n Simple_repeat Simple_repeat 3 40 0 3705 194 60 19 chr3 205490059 205490404 -22034174 - L1PA15 LINE L1 -843 5303 4973 2262 78 3 56 chr3 205490404 205490723 -22033855 + AluY SINE Alu 1 302 -9 3705 194 60 19 chr3 205490723 205491314 -22033264 - L1PA15 LINE L1 -1173 4973 4329 24 32 0 0 chr3 205491318 205491349 -22033229 + AT_rich Low_complexity Low_complexity 1 31 0 25 31 0 0 chr3 205491551 205491583 -22032995 + AT_rich Low_complexity Low_complexity 1 32 0 26 30 0 0 chr3 205491719 205491752 -22032826 + AT_rich Low_complexity Low_complexity 1 33 0 456 253 88 21 chr3 205491953 205492147 -22032431 - L1MC4a LINE L1 -1871 5937 5731 1338 194 81 4 chr3 205492147 205492375 -22032203 + MER63 DNA MER1_type 1 210 -851 1670 208 0 16 chr3 205492375 205492692 -22031886 - AluJb SINE Alu 0 312 1 1338 194 81 4 chr3 205492692 205492843 -22031735 + MER63 DNA MER1_type 210 1061 0 1110 238 52 14 chr3 205492844 205493189 -22031389 - L1MC4a LINE L1 -853 5451 5367 467 344 53 9 chr3 205493258 205493485 -22031093 + L2 LINE L2 2565 2801 -513 915 113 0 15 chr3 205493703 205493836 -22030742 + FLAM_C SINE Alu 1 131 -2 1316 184 36 30 chr3 205494202 205494246 -22030332 - MLT2D LTR ERVL 0 414 372 514 0 30 0 chr3 205494246 205494312 -22030266 + (GA)n Simple_repeat Simple_repeat 1 68 0 1929 118 59 3 chr3 205494314 205494601 -22029977 - AluSq SINE Alu -10 303 1 1316 184 36 30 chr3 205494601 205494884 -22029694 - MLT2D LTR ERVL -42 372 82 280 103 0 0 chr3 205494921 205494960 -22029618 + MLT1C LTR MaLR 34 72 -395 * 569 250 0 15 chr3 205494948 205495084 -22029494 + MLT1C LTR MaLR 334 467 0 205 276 35 0 chr3 205495692 205495750 -22028828 + L2 LINE L2 3211 3270 -2 * 357 302 39 29 chr3 205495731 205495877 -22028701 + MIR SINE MIR 6 150 -59 22 35 0 0 chr3 205496233 205496262 -22028316 + AT_rich Low_complexity Low_complexity 1 29 0 287 206 200 45 chr3 205496307 205496462 -22028116 + MER46C DNA MER2_type 1 179 -159 210 71 0 0 chr3 205497164 205497192 -22027386 + (TC)n Simple_repeat Simple_repeat 1 28 0 28 48 0 0 chr3 205497309 205497351 -22027227 + AT_rich Low_complexity Low_complexity 1 42 0 649 236 174 20 chr3 205497398 205497593 -22026985 + MIR SINE MIR 5 229 -33 684 201 157 9 chr3 205498301 205498517 -22026061 - L1ME1 LINE L1 -2 6164 5925 1626 232 71 59 chr3 205499497 205500190 -22024388 + L1M4 LINE L1 2110 2810 -3336 896 178 7 0 chr3 205500613 205500759 -22023819 - FRAM SINE Alu -30 146 1 282 317 0 12 chr3 205500802 205500884 -22023694 - L2 LINE L2 0 3313 3233 451 246 63 8 chr3 205502083 205502209 -22022369 - MIR SINE MIR -71 191 59 329 263 144 0 chr3 205502459 205502619 -22021959 - L1ME4a LINE L1 0 6121 5939 269 311 278 0 chr3 205502935 205503115 -22021463 - L1ME4a LINE L1 -410 5711 5482 307 356 93 0 chr3 205503526 205503644 -22020934 + L2 LINE L2 3144 3272 0 267 298 21 0 chr3 205504678 205504772 -22019806 + MER94 DNA DNA 39 134 0 316 265 105 14 chr3 205504855 205505074 -22019504 - L1ME4a LINE L1 -3 6118 5880 1522 127 4 9 chr3 205505654 205505883 -22018695 + AluSg/x SINE Alu 81 308 -4 24 67 0 0 chr3 205506156 205506201 -22018377 + AT_rich Low_complexity Low_complexity 1 45 0 2208 111 0 7 chr3 205506378 205506675 -22017903 - AluSg SINE Alu -12 298 4 2275 135 0 0 chr3 205506972 205507283 -22017295 + AluSx SINE Alu 1 311 -1 1082 143 92 6 chr3 205508913 205509160 -22015418 + MER61-int LTR ERV1 1398 3721 -3596 471 50 0 0 chr3 205509160 205509220 -22015358 + Alu SINE Alu 236 295 -15 1625 91 8 24 chr3 205509222 205509474 -22015104 + MER61-int LTR ERV1 3565 3812 -1405 869 263 85 22 chr3 205509961 205510032 -22014546 + MER119 DNA MER1_type 1 66 -517 2173 123 3 0 chr3 205510032 205510325 -22014253 - AluSx SINE Alu -18 294 1 869 263 85 22 chr3 205510325 205510523 -22014055 + MER119 DNA MER1_type 66 287 -296 372 174 7 1 chr3 205510528 205510674 -22013904 - MLT1E LTR MaLR -438 155 1 387 60 0 0 chr3 205510759 205510809 -22013769 + (TTCA)n Simple_repeat Simple_repeat 4 53 0 182 207 103 17 chr3 205510816 205510874 -22013704 + MIR SINE MIR 200 262 0 192 333 98 17 chr3 205511061 205511235 -22013343 - L2 LINE L2 -171 3101 2914 833 235 117 9 chr3 205511525 205511738 -22012840 + MIR SINE MIR 17 252 -10 23 33 0 0 chr3 205512344 205512374 -22012204 + AT_rich Low_complexity Low_complexity 1 30 0 2177 125 0 10 chr3 205512394 205512698 -22011880 - AluSx SINE Alu -11 301 1 884 147 7 0 chr3 205512706 205512842 -22011736 - AluJb SINE Alu -175 137 1 211 349 80 58 chr3 205512852 205513279 -22011299 - L2 LINE L2 -609 2705 2270 1429 204 130 42 chr3 205513319 205513819 -22010759 - LTR10B LTR ERV1 -3 544 1 2197 126 0 3 chr3 205514019 205514329 -22010249 + AluSx SINE Alu 4 312 0 2587 33 3 0 chr3 205514460 205514759 -22009819 + AluY SINE Alu 1 300 -11 891 135 14 14 chr3 205514811 205514952 -22009626 + BC200 scRNA scRNA 1 141 -59 2088 81 8 0 chr3 205515178 205515437 -22009141 + AluY SINE Alu 30 290 -21 1386 172 0 18 chr3 205515527 205515754 -22008824 - AluJo SINE Alu -12 300 78 606 214 17 0 chr3 205516056 205516173 -22008405 + FLAM_A SINE Alu 22 140 -2 716 129 29 65 chr3 205516286 205516425 -22008153 + AluJb SINE Alu 171 304 -8 2478 193 51 57 chr3 205516697 205517270 -22007308 - L1MD3 LINE L1 0 7995 7420 2157 137 0 13 chr3 205517270 205517585 -22006993 - AluSx SINE Alu -1 311 1 2478 193 51 57 chr3 205517585 205517600 -22006978 - L1MD3 LINE L1 -575 7420 7406 246 207 69 0 chr3 205517600 205517658 -22006920 - MLT1F1 LTR MaLR -443 124 63 2478 193 51 57 chr3 205517658 205517840 -22006738 - L1MD3 LINE L1 -589 7406 7224 2291 94 0 3 chr3 205517840 205518158 -22006420 - AluSq SINE Alu 0 317 1 1290 191 124 0 chr3 205518161 205518418 -22006160 - AluJb SINE Alu -10 292 4 2478 193 51 57 chr3 205518418 205518624 -22005954 - L1MD3 LINE L1 -773 7222 6766 226 125 0 0 chr3 205518653 205518685 -22005893 + Alu SINE Alu 2 33 -267 1992 118 60 24 chr3 205518686 205519017 -22005561 + MER61A LTR ERV1 1 343 0 2445 156 94 21 chr3 205519018 205519667 -22004911 + MER61A-int LTR ERV1 1 777 -4440 1213 122 58 7 chr3 205519660 205519945 -22004633 + MER61A-int LTR ERV1 1320 1621 -3596 * 415 105 0 0 chr3 205519945 205520002 -22004576 + Alu SINE Alu 236 292 -18 3805 83 7 32 chr3 205520003 205520131 -22004447 + MER61A-int LTR ERV1 2169 2299 -2918 2185 130 0 0 chr3 205520131 205520432 -22004146 - AluSx SINE Alu -11 301 1 3805 83 7 32 chr3 205520432 205520903 -22003675 + MER61A-int LTR ERV1 2299 2753 -2464 1027 113 0 0 chr3 205520903 205521036 -22003542 - AluSq/x SINE Alu -180 133 1 16202 82 40 24 chr3 205521039 205521267 -22003311 + MER61A-int LTR ERV1 2737 2960 -2257 2261 106 0 3 chr3 205521267 205521560 -22003018 - AluSq SINE Alu -17 296 5 16202 82 40 24 chr3 205521560 205522157 -22002421 + MER61A-int LTR ERV1 2960 3546 -1671 2189 100 0 20 chr3 205522157 205522458 -22002120 + AluSg SINE Alu 1 295 -15 16202 82 40 24 chr3 205522458 205524048 -22000530 + MER61A-int LTR ERV1 3546 5194 -23 2315 95 3 13 chr3 205524048 205524353 -22000225 - AluSp SINE Alu -11 302 1 16202 82 40 24 chr3 205524353 205524378 -22000200 + MER61A-int LTR ERV1 5194 5217 0 1592 151 73 19 chr3 205524378 205524695 -21999883 + MER61A LTR ERV1 1 334 -9 1593 146 61 0 chr3 205524695 205524956 -21999622 + AluSx SINE Alu 22 298 -14 782 268 14 0 chr3 205524966 205525186 -21999392 - L1MC4 LINE L1 -1060 6982 6760 2086 125 20 3 chr3 205525478 205525782 -21998796 + AluSg SINE Alu 1 309 -1 300 217 75 9 chr3 205526023 205526129 -21998449 + MER112 DNA MER1_type 118 230 -30 1327 89 0 6 chr3 205526136 205526305 -21998273 + AluY SINE Alu 108 275 -36 207 0 0 0 chr3 205526312 205526335 -21998243 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 2416 84 0 3 chr3 205526346 205526645 -21997933 + AluSq SINE Alu 1 298 -15 502 291 174 14 chr3 205526727 205526940 -21997638 - MIR SINE MIR -2 260 14 283 176 0 0 chr3 205527310 205527361 -21997217 + MER66B LTR ERV1 295 345 -141 2052 92 6 95 chr3 205527377 205527703 -21996875 + AluSq SINE Alu 1 297 -16 1800 136 86 0 chr3 205527704 205527998 -21996580 + AluSx SINE Alu 1 318 0 182 88 0 29 chr3 205527983 205528017 -21996561 + (GA)n Simple_repeat Simple_repeat 1 33 0 * 315 177 0 0 chr3 205527999 205528033 -21996545 + GA-rich Low_complexity Low_complexity 4 65 0 219 36 0 0 chr3 205528033 205528061 -21996517 + (GGGA)n Simple_repeat Simple_repeat 2 29 0 443 308 118 18 chr3 205528127 205528618 -21995960 - HAL1 LINE L1 -107 2400 1861 518 114 11 45 chr3 205528619 205528707 -21995871 + AluS SINE Alu 1 85 -228 409 155 14 0 chr3 205528707 205528778 -21995800 + AluSg/x SINE Alu 189 260 -42 24 0 0 0 chr3 205528859 205528883 -21995695 + AT_rich Low_complexity Low_complexity 1 24 0 2039 259 70 10 chr3 205528968 205529171 -21995407 - HAL1 LINE L1 -638 1869 1680 1959 137 19 23 chr3 205529171 205529343 -21995235 - AluSx SINE Alu -6 306 135 2396 87 0 0 chr3 205529343 205529643 -21994935 - AluSg SINE Alu -5 305 6 2153 122 0 0 chr3 205529648 205529942 -21994636 - AluSc SINE Alu -15 294 1 1959 137 19 23 chr3 205529942 205530070 -21994508 - AluSx SINE Alu -181 131 1 2039 259 70 10 chr3 205530070 205530646 -21993932 - HAL1 LINE L1 -827 1680 1043 256 167 39 26 chr3 205530646 205530724 -21993854 + (TA)n Simple_repeat Simple_repeat 1 79 0 234 0 0 0 chr3 205530729 205530755 -21993823 + (CA)n Simple_repeat Simple_repeat 2 27 0 648 133 107 93 chr3 205530766 205530916 -21993662 - AluJo SINE Alu -160 152 1 2038 112 0 7 chr3 205530921 205531197 -21993381 - AluSq SINE Alu -17 296 23 680 125 0 0 chr3 205531202 205531306 -21993272 + AluSg/x SINE Alu 201 304 -6 599 210 0 8 chr3 205531359 205531478 -21993100 + FLAM_C SINE Alu 1 118 -25 396 59 0 0 chr3 205531483 205531534 -21993044 + (CA)n Simple_repeat Simple_repeat 2 52 0 421 244 183 9 chr3 205531535 205531765 -21992813 - L1ME4a LINE L1 -65 6056 5787 1900 158 3 0 chr3 205531785 205532077 -21992501 - AluJb SINE Alu -19 293 1 346 317 56 6 chr3 205532088 205532268 -21992310 - L1ME4a LINE L1 0 6121 5933 197 338 44 16 chr3 205532411 205532541 -21992037 + MIR SINE MIR 26 162 -46 273 160 13 27 chr3 205532734 205532809 -21991769 + GA-rich Low_complexity Low_complexity 2 75 0 2816 167 20 42 chr3 205532829 205533200 -21991378 + L1MB8 LINE L1 5520 5873 -305 1891 143 0 52 chr3 205533200 205533528 -21991050 + AluJb SINE Alu 1 311 -1 2816 167 20 42 chr3 205533528 205533792 -21990786 + L1MB8 LINE L1 5873 6141 -37 326 133 0 0 chr3 205533987 205534032 -21990546 + FRAM SINE Alu 70 114 -52 830 215 63 24 chr3 205534033 205534098 -21990480 + AluJb SINE Alu 86 147 -165 1832 98 72 8 chr3 205534098 205534401 -21990177 + AluSg SINE Alu 1 320 0 830 215 63 24 chr3 205534401 205534539 -21990039 + AluJb SINE Alu 147 298 -14 182 180 40 0 chr3 205535587 205535637 -21988941 + C-rich Low_complexity Low_complexity 4 55 0 180 0 0 0 chr3 205536510 205536530 -21988048 + (TTTTG)n Simple_repeat Simple_repeat 2 21 0 185 386 0 70 chr3 205537941 205538055 -21986523 + MIR3 SINE MIR 6 111 -97 531 223 85 78 chr3 205538187 205538470 -21986108 - L1ME1 LINE L1 -17 6149 5865 470 248 57 0 chr3 205539147 205539304 -21985274 - L1MB7 LINE L1 -5 6179 6014 1989 122 3 45 chr3 205539396 205539708 -21984870 - AluSx SINE Alu -13 299 1 1970 111 7 17 chr3 205539840 205540137 -21984441 - AluSc SINE Alu -15 294 1 2406 89 0 0 chr3 205540668 205540971 -21983607 + AluSg SINE Alu 1 303 -7 195 337 11 0 chr3 205541208 205541303 -21983275 - MIR SINE MIR -19 243 148 851 163 7 0 chr3 205541304 205541439 -21983139 - AluJo SINE Alu -176 136 1 307 307 177 23 chr3 205541782 205541997 -21982581 - MIR SINE MIR -5 257 10 829 143 116 31 chr3 205542139 205542274 -21982304 + MER33 DNA MER1_type 5 168 -2417 2160 122 3 0 chr3 205542274 205542585 -21981993 - AluSx SINE Alu 0 312 1 829 143 116 31 chr3 205542585 205542673 -21981905 + MER33 DNA MER1_type 168 247 -77 2027 116 22 0 chr3 205542679 205542956 -21981622 - AluSg SINE Alu -16 294 12 225 227 0 0 chr3 205543285 205543329 -21981249 + L2 LINE L2 3264 3307 -6 1899 159 23 0 chr3 205543511 205543812 -21980766 - AluSx SINE Alu -4 308 1 2050 89 23 33 chr3 205544089 205544391 -21980187 + AluSq SINE Alu 1 299 -14 552 273 113 70 chr3 205545115 205545616 -21978962 - L1ME1 LINE L1 -642 5702 5174 1662 163 3 53 chr3 205545616 205545917 -21978661 - AluJb SINE Alu -26 286 1 552 273 113 70 chr3 205545917 205546130 -21978448 - L1ME1 LINE L1 -1170 5174 4972 480 151 0 54 chr3 205546780 205546873 -21977705 - FLAM_A SINE Alu -35 107 20 1973 132 31 0 chr3 205546963 205547251 -21977327 - AluSx SINE Alu -15 297 1 642 207 101 17 chr3 205547252 205547431 -21977147 - MER105 DNA DNA -10 194 1 1168 66 0 0 chr3 205547656 205547793 -21976785 - AluSq/x SINE Alu -175 137 1 294 213 134 16 chr3 205547801 205547928 -21976650 - HsTC2a DNA Tc2 -7 735 594 934 248 45 62 chr3 205547988 205548083 -21976495 - HsTC2a DNA Tc2 -1449 451 356 2233 99 7 0 chr3 205548083 205548376 -21976202 + AluSg SINE Alu 1 295 -15 934 248 45 62 chr3 205548376 205548699 -21975879 - HsTC2a DNA Tc2 -1544 356 40 261 0 0 0 chr3 205549480 205549509 -21975069 + (TA)n Simple_repeat Simple_repeat 2 30 0 470 308 134 64 chr3 205550986 205551756 -21972822 - L1M4 LINE L1 -1007 5139 4316 1951 102 63 0 chr3 205551922 205552206 -21972372 - AluSp SINE Alu -11 302 1 2166 95 7 3 chr3 205552984 205553279 -21971299 + AluSg SINE Alu 1 296 -14 2037 113 34 7 chr3 205553756 205554049 -21970529 + AluSx SINE Alu 3 303 -9 2135 130 0 0 chr3 205554219 205554520 -21970058 - AluSq SINE Alu -12 301 1 196 286 0 0 chr3 205554688 205554737 -21969841 + L2 LINE L2 3254 3302 -11 1541 180 15 7 chr3 205554741 205555013 -21969565 - AluJb SINE Alu -9 303 30 286 233 45 125 chr3 205555044 205555220 -21969358 - HAL1 LINE L1 -2321 186 25 328 302 249 21 chr3 205555825 205556014 -21968564 - MIR SINE MIR -17 245 14 325 343 19 9 chr3 205556133 205556241 -21968337 - MIR SINE MIR -134 128 20 2042 105 3 14 chr3 205556830 205557116 -21967462 + AluSq SINE Alu 1 283 -30 371 140 0 0 chr3 205558817 205558874 -21965704 - AluS SINE Alu -246 57 1 2153 129 3 0 chr3 205558883 205559193 -21965385 - AluSx SINE Alu -1 311 1 1947 148 0 0 chr3 205559260 205559569 -21965009 - AluSx SINE Alu 0 309 1 22 0 0 0 chr3 205560624 205560646 -21963932 + AT_rich Low_complexity Low_complexity 1 22 0 2214 92 3 0 chr3 205561539 205561849 -21962729 - AluSp SINE Alu 0 311 1 1915 162 7 0 chr3 205561887 205562189 -21962389 - AluSx SINE Alu -2 310 7 419 179 67 97 chr3 205562434 205562568 -21962010 - MER21B LTR ERV1 -373 490 361 389 187 0 0 chr3 205562913 205562988 -21961590 - MER116 DNA Mariner -5 75 1 2201 107 13 0 chr3 205563568 205563877 -21960701 - AluSp SINE Alu 0 313 1 1725 149 3 25 chr3 205564180 205564462 -21960116 - AluJb SINE Alu -5 307 32 2664 55 0 0 chr3 205565098 205565407 -21959171 + AluY SINE Alu 1 309 -2 2287 106 3 0 chr3 205565966 205566268 -21958310 - AluSx SINE Alu -9 303 1 2088 91 42 14 chr3 205566268 205566553 -21958025 - AluSx SINE Alu -4 308 15 2410 61 14 0 chr3 205566920 205567213 -21957365 - AluSp SINE Alu -16 297 1 225 91 0 91 chr3 205567232 205567276 -21957302 - Looper DNA T2_type 0 1558 1519 1879 138 14 34 chr3 205567327 205567623 -21956955 - AluJo SINE Alu -18 294 5 1464 184 0 26 chr3 205567659 205567925 -21956653 - AluJb SINE Alu -53 259 1 4153 191 95 59 chr3 205567925 205568397 -21956181 - Looper DNA T2_type -135 1423 969 1548 217 3 16 chr3 205568397 205568710 -21955868 - AluJb SINE Alu -3 309 1 4153 191 95 59 chr3 205568710 205569607 -21954971 - Looper DNA T2_type -589 969 5 1982 132 20 0 chr3 205570051 205570347 -21954231 - AluSq SINE Alu -11 302 1 2008 125 10 0 chr3 205572388 205572684 -21951894 - AluSx SINE Alu -13 299 1 1851 155 134 7 chr3 205573486 205573918 -21950660 - L1MB2 LINE L1 0 6171 5685 1837 160 0 33 chr3 205573931 205574231 -21950347 + AluJo SINE Alu 1 290 -22 192 156 0 0 chr3 205574762 205574794 -21949784 - MIR SINE MIR -14 248 217 631 188 0 0 chr3 205574921 205575022 -21949556 + FLAM_A SINE Alu 1 101 -41 227 226 16 0 chr3 205575034 205575096 -21949482 + (TA)n Simple_repeat Simple_repeat 2 64 0 865 168 0 0 chr3 205575127 205575258 -21949320 - FLAM_C SINE Alu -12 131 1 756 236 0 34 chr3 205575410 205575588 -21948990 + FRAM SINE Alu 1 171 -5 312 261 161 45 chr3 205575589 205575788 -21948790 + MIR SINE MIR 26 247 -15 1906 132 6 46 chr3 205575819 205576144 -21948434 - AluJo SINE Alu 0 312 1 198 0 0 0 chr3 205577873 205577895 -21946683 + (T)n Simple_repeat Simple_repeat 1 22 0 2272 78 0 39 chr3 205577988 205578297 -21946281 - AluSg SINE Alu -11 299 3 24 32 0 0 chr3 205581035 205581066 -21943512 + AT_rich Low_complexity Low_complexity 1 31 0 3127 76 16 16 chr3 205581240 205581686 -21942892 - L1PB2 LINE L1 -1 6150 5705 2306 100 0 0 chr3 205581805 205582106 -21942472 - AluSc SINE Alu -8 301 1 1819 167 3 0 chr3 205583471 205583765 -21940813 - AluJb SINE Alu -17 295 1 22 0 10 0 chr3 205583806 205583870 -21940708 + AT_rich Low_complexity Low_complexity 1 22 0 1751 131 41 69 chr3 205584049 205584369 -21940209 + AluJo SINE Alu 1 311 -1 23 33 0 0 chr3 205585098 205585128 -21939450 + AT_rich Low_complexity Low_complexity 1 30 0 187 266 114 13 chr3 205585632 205585711 -21938867 + L2 LINE L2 3170 3256 -16 28 0 0 0 chr3 205586092 205586120 -21938458 + AT_rich Low_complexity Low_complexity 1 28 0 252 0 0 0 chr3 205587674 205587702 -21936876 + (TA)n Simple_repeat Simple_repeat 1 28 0 514 207 96 0 chr3 205587747 205587882 -21936696 + MER104 DNA Tc2 32 179 -1 2270 86 10 0 chr3 205588022 205588314 -21936264 - AluSp SINE Alu -18 295 1 842 174 47 6 chr3 205588421 205588593 -21935985 - MLT1D LTR MaLR -1 504 326 695 172 7 29 chr3 205588601 205588738 -21935840 - MLT1D LTR MaLR -420 204 73 274 314 78 29 chr3 205588882 205589086 -21935492 + L3b LINE CR1 1355 1568 -15 374 93 0 93 chr3 205590148 205590223 -21934355 - MADE1 DNA Mariner 0 80 13 230 0 0 0 chr3 205590215 205590242 -21934336 + MADE1 DNA Mariner 36 62 -18 * 479 222 85 20 chr3 205590238 205590391 -21934187 - MER104 DNA Tc2 -13 167 5 313 230 110 40 chr3 205590709 205590809 -21933769 + MLT1E LTR MaLR 131 237 -356 351 0 0 0 chr3 205593384 205593423 -21931155 + (TA)n Simple_repeat Simple_repeat 1 39 0 1782 142 36 0 chr3 205595182 205595463 -21929115 + AluJb SINE Alu 1 291 -21 325 130 174 14 chr3 205596353 205596422 -21928156 + MADE1 DNA Mariner 1 80 0 24 0 0 0 chr3 205596967 205596991 -21927587 + AT_rich Low_complexity Low_complexity 1 24 0 1986 116 56 0 chr3 205597158 205597443 -21927135 - AluSq SINE Alu -12 301 1 21 0 0 0 chr3 205598428 205598449 -21926129 + AT_rich Low_complexity Low_complexity 1 21 0 195 100 0 0 chr3 205600064 205600094 -21924484 + (T)n Simple_repeat Simple_repeat 1 30 0 384 247 37 0 chr3 205601604 205601685 -21922893 + 7SLRNA srpRNA srpRNA 1 84 -236 21 0 0 0 chr3 205602549 205602570 -21922008 + AT_rich Low_complexity Low_complexity 1 21 0 371 184 0 26 chr3 205602741 205602817 -21921761 - MER116 DNA Mariner -6 74 1 196 243 95 27 chr3 205603047 205603121 -21921457 + MIR3 SINE MIR 103 181 -27 233 328 103 17 chr3 205604656 205604772 -21919806 + MIR SINE MIR 24 149 -59 266 247 313 16 chr3 205605076 205605258 -21919320 + MIR SINE MIR 17 252 -10 1856 226 180 11 chr3 205605756 205606296 -21918282 - MER82 DNA MER2_type 0 653 23 547 176 10 39 chr3 205606933 205607035 -21917543 + AluJb SINE Alu 153 251 -61 238 333 0 29 chr3 205607277 205607346 -21917232 + L2 LINE L2 3116 3182 -90 451 236 47 9 chr3 205608238 205608344 -21916234 + MER5A DNA MER1_type 2 111 -78 2293 94 7 0 chr3 205609282 205609580 -21914998 - AluSx SINE Alu -10 302 3 943 136 0 0 chr3 205611358 205611490 -21913088 - FLAM_C SINE Alu 0 133 2 2308 66 10 26 chr3 205611722 205612025 -21912553 + AluY SINE Alu 1 298 -13 206 289 72 12 chr3 205613589 205613672 -21910906 + MIR3 SINE MIR 111 198 -10 427 243 90 0 chr3 205614053 205614164 -21910414 + MIR SINE MIR 60 180 -82 1051 216 40 60 chr3 205614386 205614733 -21909845 - MLT1D LTR MaLR -165 340 1 574 219 118 84 chr3 205614897 205615135 -21909443 + MER112 DNA MER1_type 3 248 -12 231 278 0 0 chr3 205615206 205615260 -21909318 - MIR SINE MIR -29 233 180 888 273 113 68 chr3 205615308 205615751 -21908827 + LTR33 LTR ERVL 3 465 -56 1335 181 42 0 chr3 205615756 205616015 -21908563 + MLT1A1 LTR MaLR 2 271 -94 819 161 74 12 chr3 205616019 205616181 -21908397 + MLT1A1 LTR MaLR 194 365 0 960 178 0 0 chr3 205616229 205616386 -21908192 - FRAM SINE Alu -8 158 2 2042 243 112 64 chr3 205616403 205617213 -21907365 - L2 LINE L2 -684 2630 1782 2361 92 0 0 chr3 205617213 205617517 -21907061 + AluSc SINE Alu 1 304 -5 330 277 11 47 chr3 205617576 205617716 -21906862 - MIR3 SINE MIR -3 205 71 2992 118 24 7 chr3 205618056 205618513 -21906065 + MER4C LTR ERV1 1 465 0 21 0 0 0 chr3 205618872 205618893 -21905685 + AT_rich Low_complexity Low_complexity 1 21 0 1635 179 19 23 chr3 205618958 205619265 -21905313 - AluJo SINE Alu -6 306 1 324 0 0 0 chr3 205619314 205619350 -21905228 + (TG)n Simple_repeat Simple_repeat 2 37 0 522 296 156 0 chr3 205620491 205620677 -21903901 - MER58C DNA MER1_type 0 215 1 2401 89 0 13 chr3 205620850 205621165 -21903413 - AluY SINE Alu 0 311 1 31252 102 8 25 chr3 205621187 205623095 -21901483 - L1PA7 LINE L1 -4 6465 4526 2336 100 0 0 chr3 205623095 205623405 -21901173 - AluY SINE Alu 0 311 2 31252 102 8 25 chr3 205623405 205627893 -21896685 - L1PA7 LINE L1 -1943 4526 80 870 114 60 18 chr3 205627893 205628051 -21896527 + MER44D DNA MER2_type 295 517 -1970 2268 125 0 0 chr3 205628051 205628363 -21896215 + AluSx SINE Alu 1 312 0 5823 121 86 50 chr3 205628369 205629337 -21895241 - Tigger3b DNA MER2_type -1798 1230 208 2059 125 0 0 chr3 205629337 205629624 -21894954 - AluSx SINE Alu -25 287 1 5823 121 86 50 chr3 205629624 205629840 -21894738 - Tigger3b DNA MER2_type -2820 208 1 455 198 12 0 chr3 205629840 205629925 -21894653 + MER44D DNA MER2_type 619 704 -1 3368 128 7 34 chr3 205630332 205630869 -21893709 + MER1A DNA MER1_type 5 527 0 2212 99 0 0 chr3 205630957 205631239 -21893339 - AluSx SINE Alu -10 302 21 622 161 17 17 chr3 205631481 205631599 -21892979 - LTR47A LTR ERVL 0 452 335 303 122 0 41 chr3 205631600 205631649 -21892929 + Alu SINE Alu 1 47 -256 902 134 35 0 chr3 205631668 205631810 -21892768 + FRAM SINE Alu 27 173 -3 1425 196 43 55 chr3 205631812 205632158 -21892420 - LTR47A LTR ERVL -110 342 1 1892 239 79 54 chr3 205632163 205632272 -21892306 + MLT1E LTR MaLR 10 115 -478 4160 114 36 50 chr3 205632272 205632973 -21891605 - LTR8 LTR ERV1 0 691 1 1892 239 79 54 chr3 205632973 205633433 -21891145 + MLT1E LTR MaLR 115 593 0 2263 115 28 0 chr3 205633851 205634207 -21890371 + LTR24C LTR ERV1 1 366 -269 535 191 19 0 chr3 205634207 205634312 -21890266 + MSTC-int LTR MaLR 1629 1735 0 332 131 0 192 chr3 205634312 205634380 -21890198 + MSTC LTR MaLR 1 46 -382 6244 82 75 0 chr3 205634380 205635300 -21889278 - L1PB1 LINE L1 -2 6149 5221 332 131 0 192 chr3 205635300 205635330 -21889248 + MSTC LTR MaLR 46 80 -348 2437 93 0 0 chr3 205635330 205635631 -21888947 - AluSx SINE Alu -11 301 1 1813 250 80 45 chr3 205635632 205636813 -21887765 - L1MEc LINE L1 -3000 3215 2032 22 80 0 0 chr3 205636908 205636958 -21887620 + AT_rich Low_complexity Low_complexity 1 50 0 328 289 0 58 chr3 205636965 205637086 -21887492 - L1MEc LINE L1 -4584 1812 1699 462 347 90 26 chr3 205637220 205637531 -21887047 - L1MEc LINE L1 -5287 918 588 235 306 45 9 chr3 205638601 205638712 -21885866 - L2 LINE L2 -985 2329 2215 1953 132 0 4 chr3 205638765 205639046 -21885532 + AluSx SINE Alu 1 280 -32 216 0 0 0 chr3 205639048 205639072 -21885506 + (TAA)n Simple_repeat Simple_repeat 2 25 0 2141 90 0 24 chr3 205639334 205639646 -21884932 + AluSx SINE Alu 1 305 0 1982 95 0 15 chr3 205639726 205639988 -21884590 + AluSg SINE Alu 1 258 -52 2248 108 10 0 chr3 205640326 205640633 -21883945 - AluSg SINE Alu 0 310 1 21 57 0 0 chr3 205641226 205641261 -21883317 + AT_rich Low_complexity Low_complexity 1 35 0 1740 149 43 0 chr3 205642343 205642624 -21881954 - AluJo SINE Alu -19 293 1 4204 181 39 23 chr3 205644518 205645492 -21879086 - L1MB7 LINE L1 0 6420 5433 185 91 0 30 chr3 205645504 205645537 -21879041 + (TTCCC)n Simple_repeat Simple_repeat 3 34 0 1844 164 3 3 chr3 205645538 205645824 -21878754 - AluJb SINE Alu -26 286 1 3297 225 36 19 chr3 205645840 205647155 -21877423 - L1MB7 LINE L1 -3119 3263 1931 245 180 9 171 chr3 205647376 205647453 -21877125 - L1MB7 LINE L1 -4586 1796 1708 1734 160 43 27 chr3 205647453 205647753 -21876825 - AluJb SINE Alu -7 305 1 245 180 9 171 chr3 205647753 205647786 -21876792 - L1MB7 LINE L1 -4674 1708 1594 962 65 14 0 chr3 205647789 205647927 -21876651 - L1MA9 LINE L1 0 6312 6173 1483 121 6 190 chr3 205647983 205648347 -21876231 - AluJo SINE Alu -13 299 3 563 225 0 0 chr3 205648347 205648467 -21876111 - L1MB7 LINE L1 -4787 1597 1478 1755 238 64 10 chr3 205648525 205649117 -21875461 - L1ME LINE L1 -3224 2856 2233 255 313 14 21 chr3 205649156 205649300 -21875278 - L1M4 LINE L1 -2259 3887 3745 236 273 49 73 chr3 205649364 205649569 -21875009 - L1M4 LINE L1 -2572 3574 3375 432 292 50 0 chr3 205649678 205649798 -21874780 + Charlie2 DNA MER1_type 216 341 -2441 408 289 16 37 chr3 205649809 205649996 -21874582 - HAL1 LINE L1 -1544 963 781 1820 144 56 14 chr3 205650046 205650406 -21874172 + THE1C LTR MaLR 1 375 0 2129 127 10 3 chr3 205650744 205651051 -21873527 + AluSx SINE Alu 1 309 -3 467 270 35 52 chr3 205651251 205651425 -21873153 + MER5A DNA MER1_type 16 186 -3 25 31 0 0 chr3 205651535 205651567 -21873011 + AT_rich Low_complexity Low_complexity 1 32 0 832 235 14 28 chr3 205651804 205652021 -21872557 - L1M4 LINE L1 -1281 4865 4652 622 158 9 18 chr3 205652020 205652134 -21872444 - L1MB4 LINE L1 -149 6031 5919 * 621 179 0 92 chr3 205652174 205652236 -21872342 - L1M4 LINE L1 -1485 4661 4595 1522 213 3 7 chr3 205652236 205652532 -21872046 + AluJo SINE Alu 5 299 -13 621 179 0 92 chr3 205652532 205652642 -21871936 - L1M4 LINE L1 -1551 4595 4505 * 793 248 53 7 chr3 205652639 205652938 -21871640 - L1ME LINE L1 -5183 887 575 2886 199 25 14 chr3 205652938 205653567 -21871011 - L1MB5 LINE L1 0 6174 5539 245 27 54 0 chr3 205653602 205653639 -21870939 + (GAAAA)n Simple_repeat Simple_repeat 2 40 0 873 251 94 25 chr3 205653646 205654009 -21870569 - L1ME LINE L1 -6141 401 14 784 286 21 25 chr3 205654023 205654303 -21870275 - L1ME LINE L1 -5490 580 302 1002 119 103 5 chr3 205654410 205654604 -21869974 - L1MB3 LINE L1 -8 6175 5963 2346 183 45 8 chr3 205654606 205655386 -21869192 - L1MB3 LINE L1 -471 5712 4903 1819 138 13 36 chr3 205655390 205655694 -21868884 - AluSx SINE Alu -15 297 1 1941 168 40 8 chr3 205655779 205656154 -21868424 - MLT1B LTR MaLR -1 389 3 1783 167 0 53 chr3 205657015 205657314 -21867264 + AluJb SINE Alu 1 283 -29 444 318 47 0 chr3 205658348 205658496 -21866082 + MIR3 SINE MIR 45 199 -9 675 197 28 21 chr3 205658584 205658726 -21865852 + L1M3c LINE L1 1 143 -5998 2349 158 46 0 chr3 205658734 205659145 -21865433 - MER57B LTR ERV1 -4 430 1 17180 136 98 57 chr3 205659145 205663467 -21861111 - MER57B-int LTR ERV1 0 7537 3267 1331 183 9 25 chr3 205663467 205663896 -21860682 - L1MD3 LINE L1 -83 7912 7406 39036 78 10 11 chr3 205663896 205669902 -21854676 - L1PA5 LINE L1 0 6154 11 350 250 12 0 chr3 205669933 205670017 -21854561 - MLT1F1 LTR MaLR -448 119 35 1255 174 122 7 chr3 205670017 205670311 -21854267 - L1MD3 LINE L1 -879 7116 6789 1791 157 7 20 chr3 205670595 205670895 -21853683 + AluJo SINE Alu 1 296 -16 347 286 91 40 chr3 205670972 205671224 -21853354 + MLT1L LTR MaLR 351 615 0 510 106 0 0 chr3 205671614 205671699 -21852879 + L1MA7 LINE L1 6205 6289 -2 1828 287 84 47 chr3 205671716 205671884 -21852694 + L1MEc LINE L1 34 194 -6202 2194 103 3 7 chr3 205671884 205672184 -21852394 - AluSx SINE Alu -13 299 1 1828 287 84 47 chr3 205672184 205672640 -21851938 + L1MEc LINE L1 194 631 -5765 2248 78 51 7 chr3 205672640 205672936 -21851642 + AluSx SINE Alu 1 309 -3 1828 287 84 47 chr3 205672936 205673317 -21851261 + L1MEc LINE L1 631 1078 -5318 994 231 106 76 chr3 205673317 205673724 -21850854 + L1MCc LINE L1 23 441 -5982 235 130 20 3 chr3 205673722 205673781 -21850797 - L1M4c LINE L1 -4920 1622 1575 * 180 0 0 0 chr3 205673781 205673801 -21850777 + (TTG)n Simple_repeat Simple_repeat 2 21 0 2642 172 15 51 chr3 205674091 205674388 -21850190 - L1MB7 LINE L1 0 6184 5878 5452 63 33 9 chr3 205674388 205675136 -21849442 - MER4E LTR ERV1 0 766 1 2642 172 15 51 chr3 205675136 205675248 -21849330 - L1MB7 LINE L1 -306 5878 5764 3230 91 14 34 chr3 205675248 205675744 -21848834 + LTR19A LTR ERV1 1 486 0 2642 172 15 51 chr3 205675744 205675847 -21848731 - L1MB7 LINE L1 -420 5764 5696 1826 147 35 7 chr3 205675847 205676133 -21848445 - AluJb SINE Alu -18 294 1 2642 172 15 51 chr3 205676133 205676269 -21848309 - L1MB7 LINE L1 -488 5696 5557 1781 248 32 60 chr3 205676279 205676815 -21847763 + L1MCc LINE L1 313 833 -6006 244 215 123 0 chr3 205678243 205678308 -21846270 - MIR SINE MIR 0 262 190 209 241 19 19 chr3 205678331 205678385 -21846193 + MIR3 SINE MIR 144 197 -11 336 0 94 0 chr3 205683171 205683235 -21841343 + (TG)n Simple_repeat Simple_repeat 2 71 0 728 240 105 91 chr3 205684279 205684601 -21839977 - L1MC4a LINE L1 -1785 6023 5707 2095 119 0 3 chr3 205684601 205684894 -21839684 + AluSq SINE Alu 3 294 -19 3490 143 31 15 chr3 205684900 205685548 -21839030 + L1MB4 LINE L1 5522 6179 -1 728 240 105 91 chr3 205685548 205685788 -21838790 - L1MC4a LINE L1 -2105 5703 5446 795 140 2 65 chr3 205686706 205686869 -21837709 + L1M3 LINE L1 5602 5754 -410 294 261 68 34 chr3 205687116 205687204 -21837374 - L2 LINE L2 -14 3258 3168 700 308 20 24 chr3 205687388 205687638 -21836940 - MIR SINE MIR -11 251 3 2251 103 13 3 chr3 205688261 205688563 -21836015 + AluSx SINE Alu 1 305 -7 401 314 60 32 chr3 205689696 205689881 -21834697 - L3 LINE CR1 -88 1489 1300 246 306 9 56 chr3 205689925 205690033 -21834545 + L2 LINE L2 2694 2796 -518 2053 111 40 10 chr3 205690036 205690334 -21834244 - AluSx SINE Alu -5 307 1 1293 185 33 49 chr3 205690502 205690831 -21833747 + MER33 DNA MER1_type 1 324 0 313 271 6 10 chr3 205691025 205691123 -21833455 - Charlie8 DNA MER1_type -1001 1416 1350 502 319 69 30 chr3 205691172 205691404 -21833174 - Charlie8 DNA MER1_type -2175 242 2 27335 129 9 16 chr3 205692351 205698793 -21825785 - L1PA8A LINE L1 0 6446 1 287 280 0 32 chr3 205698923 205699016 -21825562 + MIR SINE MIR 81 170 -92 3408 120 34 25 chr3 205699410 205699969 -21824609 - MER34B LTR ERV1 -1 564 1 266 297 105 31 chr3 205700242 205700471 -21824107 - L2 LINE L2 -1024 2290 2045 220 306 51 31 chr3 205700809 205700907 -21823671 - MER5A DNA MER1_type -79 110 11 901 129 158 12 chr3 205701374 205701545 -21823033 + MSTA LTR MaLR 2 197 -231 2146 120 3 0 chr3 205701545 205701844 -21822734 + AluSq SINE Alu 1 300 -13 1479 85 5 0 chr3 205701867 205702056 -21822522 + AluSg/x SINE Alu 110 299 -13 517 179 15 37 chr3 205702388 205702522 -21822056 + LTR7 LTR ERV1 276 406 -44 207 0 0 0 chr3 205702536 205702559 -21822019 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 201 283 0 0 chr3 205703404 205703450 -21821128 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 745 147 0 0 chr3 205703603 205703742 -21820836 + AluSg/x SINE Alu 168 306 0 1055 146 87 10 chr3 205703742 205703948 -21820630 + L1MB1 LINE L1 5609 5830 -338 2501 77 0 3 chr3 205703948 205704258 -21820320 + AluSc SINE Alu 1 309 0 538 196 17 52 chr3 205704592 205704727 -21819851 + LTR7 LTR ERV1 276 405 -45 261 0 0 0 chr3 205704727 205704756 -21819822 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 538 196 17 52 chr3 205704756 205704793 -21819785 + LTR7 LTR ERV1 405 442 -8 311 237 158 22 chr3 205704795 205704934 -21819644 - HAL1 LINE L1 -112 2395 2238 400 277 13 7 chr3 205704942 205705097 -21819481 - HAL1 LINE L1 -310 2197 2042 1076 210 26 0 chr3 205705098 205705293 -21819285 + MER58A DNA MER1_type 24 223 -1 1395 273 77 17 chr3 205705352 205706041 -21818537 - L1MCc LINE L1 -3207 3734 3005 21 36 0 0 chr3 205706069 205706097 -21818481 + AT_rich Low_complexity Low_complexity 1 28 0 900 211 35 22 chr3 205706175 205706352 -21818226 - MLT1E LTR MaLR 0 593 411 2167 127 0 0 chr3 205706352 205706651 -21817927 - AluSg SINE Alu -11 299 1 900 211 35 22 chr3 205706651 205706700 -21817878 - MLT1E LTR MaLR -182 411 364 288 199 36 24 chr3 205706793 205706894 -21817684 - L1MCc LINE L1 -4961 1462 1384 239 329 26 0 chr3 205707685 205707761 -21816817 + MIR SINE MIR 36 113 -95 2159 148 24 8 chr3 205707783 205708160 -21816418 - L1MC1 LINE L1 -25 6308 5926 717 211 20 20 chr3 205708755 205708907 -21815671 - MER5A DNA MER1_type -12 177 26 1385 239 133 31 chr3 205710819 205711694 -21812884 - L2 LINE L2 -11 3302 2348 511 274 50 50 chr3 205711641 205711820 -21812758 + MIR SINE MIR 12 190 -72 * 21 57 0 0 chr3 205712092 205712127 -21812451 + AT_rich Low_complexity Low_complexity 1 35 0 5851 120 8 30 chr3 205713467 205715408 -21809170 - L1PA15 LINE L1 -3 6162 4226 2272 83 0 17 chr3 205716399 205716700 -21807878 + AluY SINE Alu 1 296 -15 226 325 78 32 chr3 205716756 205716910 -21807668 + MIR3 SINE MIR 45 205 -3 820 252 63 67 chr3 205716974 205717415 -21807163 - L1MEc LINE L1 -3488 2727 2287 1240 227 10 70 chr3 205717415 205717803 -21806775 - MLT1A1 LTR MaLR 0 365 1 820 252 63 67 chr3 205717803 205717884 -21806694 - L1MEc LINE L1 -3928 2287 2207 340 289 61 76 chr3 205717893 205718170 -21806408 - L1MEc LINE L1 -4165 2231 1959 237 234 93 37 chr3 205718285 205718392 -21806186 - L1MEc LINE L1 -4701 1695 1583 292 258 117 0 chr3 205718575 205718703 -21805875 - MER103 DNA DNA -23 143 1 198 0 0 0 chr3 205718851 205718873 -21805705 + (TTTG)n Simple_repeat Simple_repeat 2 23 0 548 241 0 0 chr3 205720106 205720218 -21804360 - MER94 DNA DNA -21 113 2 511 231 0 9 chr3 205720371 205720479 -21804099 + MER5B DNA MER1_type 72 178 0 931 228 16 15 chr3 205720955 205721256 -21803322 - MLT1A1 LTR MaLR -2 363 11 825 220 28 0 chr3 205722161 205722338 -21802240 + MER5A DNA MER1_type 1 182 -7 241 159 23 0 chr3 205722904 205722948 -21801630 - L2 LINE L2 -78 3235 3191 277 278 0 42 chr3 205725147 205725219 -21799359 - MIR3 SINE MIR -2 206 138 1563 184 0 43 chr3 205725444 205725770 -21798808 - AluJo SINE Alu 0 312 1 2384 47 0 0 chr3 205725782 205726061 -21798517 - AluY SINE Alu -5 306 28 21 57 0 0 chr3 205727028 205727063 -21797515 + AT_rich Low_complexity Low_complexity 1 35 0 194 402 26 0 chr3 205728120 205728237 -21796341 + L2 LINE L2 2247 2366 -948 377 282 84 0 chr3 205728446 205728577 -21796001 + L2 LINE L2 3167 3308 -5 1913 145 20 10 chr3 205729856 205730159 -21794419 + AluSx SINE Alu 1 306 -6 1460 205 40 51 chr3 205730238 205730613 -21793965 + MLT1A2 LTR MaLR 4 374 0 973 238 30 8 chr3 205730643 205730878 -21793700 + MIR SINE MIR 22 261 -1 2355 100 3 16 chr3 205731502 205731811 -21792767 + AluSx SINE Alu 1 305 -7 524 330 53 19 chr3 205731980 205732189 -21792389 + L2 LINE L2 2259 2474 -840 29 47 0 0 chr3 205732189 205732232 -21792346 + AT_rich Low_complexity Low_complexity 1 43 0 267 255 78 49 chr3 205733605 205733707 -21790871 + L2 LINE L2 3168 3272 0 1140 334 94 9 chr3 205733724 205734299 -21790279 + L2 LINE L2 2227 2850 -464 271 286 162 45 chr3 205734420 205734574 -21790004 + L2 LINE L2 3123 3294 -19 1894 152 3 7 chr3 205734697 205734999 -21789579 + AluJo SINE Alu 1 301 -11 346 320 73 11 chr3 205735804 205735982 -21788596 - L1ME4a LINE L1 -238 5883 5695 1649 91 0 28 chr3 205736094 205736347 -21788231 - L1MA5A LINE L1 -5 6292 6047 1750 177 68 15 chr3 205736759 205737155 -21787423 - MLT1C LTR MaLR 0 467 51 574 303 63 17 chr3 205737248 205737486 -21787092 + MIR SINE MIR 8 256 -6 2210 96 0 13 chr3 205737503 205737804 -21786774 + AluY SINE Alu 1 297 -14 2526 73 0 16 chr3 205739146 205739462 -21785116 + AluY SINE Alu 1 311 0 3767 73 0 0 chr3 205739462 205739996 -21784582 + L1P LINE L1 4237 4770 -1376 1579 124 4 4 chr3 205740096 205740321 -21784257 + AluSg/x SINE Alu 73 297 -15 900 246 54 31 chr3 205740327 205740644 -21783934 - HsTC2b DNA Tc2 -552 363 40 261 0 0 0 chr3 205741425 205741454 -21783124 + (TA)n Simple_repeat Simple_repeat 2 30 0 470 308 134 64 chr3 205742931 205743701 -21780877 - L1ME4a LINE L1 -1007 5139 4316 1951 102 63 0 chr3 205743867 205744151 -21780427 - AluSp SINE Alu -11 302 1 2166 95 7 3 chr3 205744929 205745224 -21779354 + AluSg SINE Alu 1 296 -14 2037 113 34 7 chr3 205745701 205745994 -21778584 + AluSx SINE Alu 3 303 -9 2135 130 0 0 chr3 205746164 205746465 -21778113 - AluSq SINE Alu -12 301 1 196 286 0 0 chr3 205746633 205746682 -21777896 + L2 LINE L2 3254 3302 -11 1541 180 15 7 chr3 205746686 205746958 -21777620 - AluJb SINE Alu -9 303 30 286 233 45 125 chr3 205746989 205747165 -21777413 - HAL1 LINE L1 -2321 186 25 328 302 249 21 chr3 205747770 205747959 -21776619 - MIR SINE MIR -17 245 14 325 343 19 9 chr3 205748078 205748186 -21776392 - MIR SINE MIR -134 128 20 2089 117 7 7 chr3 205748775 205749075 -21775503 + AluSq SINE Alu 1 300 -13 1492 85 5 0 chr3 205749098 205749287 -21775291 + AluSg/x SINE Alu 108 297 -13 481 159 0 28 chr3 205749647 205749754 -21774824 + LTR7 LTR ERV1 303 406 -44 207 0 0 0 chr3 205749768 205749791 -21774787 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 201 283 0 0 chr3 205750636 205750682 -21773896 + (TATATG)n Simple_repeat Simple_repeat 2 47 0 759 147 0 0 chr3 205750835 205750974 -21773604 + AluSg/x SINE Alu 168 306 0 991 146 87 10 chr3 205750974 205751180 -21773398 + L1MB1 LINE L1 5609 5830 -338 2521 77 0 3 chr3 205751180 205751490 -21773088 + AluSc SINE Alu 1 309 0 493 185 7 48 chr3 205751851 205751959 -21772619 + LTR7 LTR ERV1 303 405 -45 261 0 0 0 chr3 205751959 205751988 -21772590 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 493 185 7 48 chr3 205751988 205752025 -21772553 + LTR7 LTR ERV1 405 442 -8 311 237 158 22 chr3 205752027 205752166 -21772412 - HAL1 LINE L1 -112 2395 2238 363 284 13 7 chr3 205752174 205752329 -21772249 - HAL1 LINE L1 -310 2197 2042 1008 210 26 0 chr3 205752330 205752525 -21772053 + MER58A DNA MER1_type 24 223 -1 1231 273 77 17 chr3 205752584 205753273 -21771305 - L1MCc LINE L1 -3207 3734 3005 21 36 0 0 chr3 205753301 205753329 -21771249 + AT_rich Low_complexity Low_complexity 1 28 0 825 211 35 22 chr3 205753407 205753584 -21770994 - MLT1E LTR MaLR 0 593 411 2194 127 0 0 chr3 205753584 205753883 -21770695 - AluSg SINE Alu -11 299 1 825 211 35 22 chr3 205753883 205753932 -21770646 - MLT1E LTR MaLR -182 411 364 267 231 13 0 chr3 205754036 205754114 -21770464 - L1MCc LINE L1 -4961 1462 1384 239 329 26 0 chr3 205754917 205754993 -21769585 + MIR SINE MIR 36 113 -95 2031 148 24 8 chr3 205755015 205755392 -21769186 - L1MC1 LINE L1 -25 6308 5926 729 211 20 20 chr3 205755987 205756139 -21768439 - MER5A DNA MER1_type -12 177 26 471 208 39 71 chr3 205758051 205758205 -21766373 - L2 LINE L2 -11 3302 3154 2239 91 0 39 chr3 205808461 205808770 -21715808 - AluSq SINE Alu -16 297 1 49 18 0 0 chr3 205809587 205809643 -21714935 + AT_rich Low_complexity Low_complexity 1 56 0 1843 129 25 3 chr3 205809711 205810037 -21714541 - L1MB3 LINE L1 -1 6182 5850 243 276 67 85 chr3 205810436 205810719 -21713859 + HAL1 LINE L1 765 1042 -1465 734 258 54 24 chr3 205810774 205811069 -21713509 + HAL1 LINE L1 1427 1730 -777 3325 152 97 2 chr3 205811071 205811689 -21712889 + Tigger1 DNA MER2_type 1 677 -1741 880 173 12 12 chr3 205811689 205811857 -21712721 + MER66B LTR ERV1 1 168 -318 1642 213 3 7 chr3 205811860 205812165 -21712413 + AluSx SINE Alu 3 306 -6 370 319 57 70 chr3 205812165 205812479 -21712099 + L2 LINE L2 2911 3220 -93 221 341 77 0 chr3 205812506 205812597 -21711981 + L2 LINE L2 3199 3296 -17 312 341 67 0 chr3 205812860 205813024 -21711554 - L1M4 LINE L1 -1231 4915 4741 296 283 64 23 chr3 205813081 205813254 -21711324 - L1M4 LINE L1 -1480 4666 4487 195 224 0 112 chr3 205813330 205813428 -21711150 - L3 LINE CR1 -81 1496 1410 193 325 0 48 chr3 205813730 205813813 -21710765 + L2 LINE L2 3235 3313 0 23 54 0 0 chr3 205813981 205814018 -21710560 + AT_rich Low_complexity Low_complexity 1 37 0 216 0 0 0 chr3 205814076 205814100 -21710478 + (TG)n Simple_repeat Simple_repeat 2 25 0 234 156 0 0 chr3 205814392 205814437 -21710141 + T-rich Low_complexity Low_complexity 1 45 0 685 137 0 38 chr3 205814442 205814530 -21710048 + Tigger1 DNA MER2_type 590 673 -1745 2363 177 30 41 chr3 205814530 205814693 -21709885 + MER66B LTR ERV1 1 164 -322 2059 148 3 0 chr3 205814693 205814996 -21709582 + AluSx SINE Alu 1 304 -8 2363 177 30 41 chr3 205814996 205815323 -21709255 + MER66B LTR ERV1 164 486 0 685 137 0 38 chr3 205815323 205815365 -21709213 + Tigger1 DNA MER2_type 673 715 -1703 761 144 0 0 chr3 205815375 205815486 -21709092 - AluSg/x SINE Alu -63 249 139 8702 125 29 11 chr3 205815486 205816075 -21708503 + Tigger1 DNA MER2_type 723 1300 -1118 2062 144 0 10 chr3 205816075 205816374 -21708204 + AluSx SINE Alu 1 296 -16 8702 125 29 11 chr3 205816374 205817242 -21707336 + Tigger1 DNA MER2_type 1300 2206 -212 935 188 89 0 chr3 205817349 205817562 -21707016 - L1MC3 LINE L1 -354 7431 7200 230 310 0 0 chr3 205817563 205817650 -21706928 - MLT1F1 LTR MaLR -446 121 35 1134 181 42 0 chr3 205817650 205817909 -21706669 - L1MC3 LINE L1 -688 7097 6828 * 3068 203 43 84 chr3 205817886 205819391 -21705187 - L1MCb LINE L1 -4851 1194 1 8065 98 1 4 chr3 205819612 205820846 -21703732 - L1P LINE L1 -1980 4166 2937 6986 48 9 12 chr3 205820846 205822311 -21702267 + L1PA5 LINE L1 4692 6154 0 222 205 0 26 chr3 205822316 205822355 -21702223 + T-rich Low_complexity Low_complexity 2 39 0 1177 147 67 14 chr3 205823810 205824095 -21700483 + AluY SINE Alu 1 300 -1 600 306 74 38 chr3 205824354 205825076 -21699502 - L1M4 LINE L1 -1785 4361 3667 1944 151 39 24 chr3 205825076 205825407 -21699171 - MER1B DNA MER1_type 0 337 2 600 306 74 38 chr3 205825407 205825704 -21698874 - L1M4 LINE L1 -2479 3667 3382 2347 112 0 0 chr3 205825704 205826000 -21698578 - AluSx SINE Alu -14 298 3 600 306 74 38 chr3 205826000 205826405 -21698173 - L1M4 LINE L1 -2764 3382 2884 547 99 12 0 chr3 205826593 205826674 -21697904 - AluY SINE Alu -229 82 1 2127 116 0 0 chr3 205826688 205826973 -21697605 - AluSx SINE Alu -27 285 1 401 171 122 0 chr3 205826987 205827069 -21697509 - MER92B LTR ERV1 -542 94 3 271 294 87 40 chr3 205827143 205827269 -21697309 - MIR SINE MIR -82 180 49 379 387 18 30 chr3 205827445 205827613 -21696965 + MIR SINE MIR 20 185 -77 2821 132 28 4 chr3 205828533 205829003 -21695575 - THE1-int LTR MaLR -30 1550 1070 * 5954 92 1 0 chr3 205828994 205829852 -21694726 + L1P LINE L1 3826 4684 -1462 634 176 137 0 chr3 205830129 205830260 -21694318 - Tigger1 DNA MER2_type -1 2417 2269 1160 113 5 21 chr3 205830413 205830607 -21693971 + AluY SINE Alu 120 310 -1 355 250 26 26 chr3 205830690 205830806 -21693772 - LTR50 LTR ERVL -209 586 471 1929 129 30 7 chr3 205830850 205831145 -21693433 + AluSx SINE Alu 6 307 -5 661 185 20 15 chr3 205831120 205831387 -21693191 + GA-rich Low_complexity Low_complexity 1 268 0 855 206 94 9 chr3 205831452 205831675 -21692903 - LTR50 LTR ERVL -553 242 1 488 127 85 0 chr3 205831867 205831985 -21692593 - Charlie5 DNA MER1_type -96 2516 2389 1021 249 99 23 chr3 205832205 205832639 -21691939 - HAL1b LINE L1 -301 1047 581 687 46 0 0 chr3 205832644 205832731 -21691847 + (TA)n Simple_repeat Simple_repeat 2 88 0 475 254 0 15 chr3 205832733 205832863 -21691715 - L1PA5 LINE L1 -31 6123 5996 181 282 0 26 chr3 205832864 205832903 -21691675 + (TA)n Simple_repeat Simple_repeat 1 38 0 184 264 149 11 chr3 205833488 205833575 -21691003 - MER5A DNA MER1_type -56 133 35 287 205 90 0 chr3 205833693 205833771 -21690807 + MER103 DNA DNA 13 97 -69 1851 154 7 3 chr3 205833888 205834180 -21690398 - AluSx SINE Alu -19 293 1 2301 147 47 100 chr3 205834711 205835241 -21689337 + MER92B LTR ERV1 135 636 0 1529 179 140 11 chr3 205835488 205835839 -21688739 - MSTD LTR MaLR 0 396 1 303 226 193 22 chr3 205835947 205836128 -21688450 + L1ME4a LINE L1 5895 6106 -15 1274 189 42 83 chr3 205836172 205836558 -21688020 - MLT1A2 LTR MaLR 0 374 5 343 275 46 0 chr3 205836714 205836845 -21687733 - L1MC4a LINE L1 -1907 5901 5765 263 211 28 0 chr3 205836962 205837033 -21687545 + L1ME4a LINE L1 5967 6039 -82 249 349 7 0 chr3 205838223 205838372 -21686206 + (TA)n Simple_repeat Simple_repeat 1 150 0 221 276 66 13 chr3 205838899 205838975 -21685603 - L3b LINE CR1 -213 1370 1291 602 162 48 0 chr3 205839734 205839839 -21684739 + L2 LINE L2 3197 3306 -7 2112 117 3 0 chr3 205839937 205840219 -21684359 - AluSc SINE Alu -26 283 1 439 153 0 0 chr3 205841297 205841369 -21683209 - AluS SINE Alu -11 298 227 192 40 0 0 chr3 205841760 205841785 -21682793 + (TTG)n Simple_repeat Simple_repeat 2 26 0 1996 114 3 10 chr3 205841787 205842076 -21682502 - AluSg1 SINE Alu -22 287 1 189 0 0 0 chr3 205845146 205845167 -21679411 + (T)n Simple_repeat Simple_repeat 1 21 0 23 68 0 0 chr3 205845562 205845606 -21678972 + AT_rich Low_complexity Low_complexity 1 44 0 212 313 109 7 chr3 205846376 205846523 -21678055 - MIR SINE MIR 0 262 101 870 266 76 60 chr3 205847381 205847956 -21676622 + L1MC4a LINE L1 5018 5582 -539 1915 75 4 0 chr3 205847956 205848209 -21676369 - L1PA14 LINE L1 -3 6158 5905 870 266 76 60 chr3 205848209 205848303 -21676275 + L1MC4a LINE L1 5582 5673 -448 1407 184 100 16 chr3 205848303 205848624 -21675954 - MER7A DNA MER2_type 0 346 1 870 266 76 60 chr3 205848624 205848838 -21675740 + L1MC4a LINE L1 5673 5824 -297 258 32 0 0 chr3 205848899 205848930 -21675648 + (TG)n Simple_repeat Simple_repeat 1 31 0 207 0 0 0 chr3 205848929 205848952 -21675626 + (GA)n Simple_repeat Simple_repeat 1 23 0 * 1612 141 32 35 chr3 205848981 205849321 -21675257 - L1MA8 LINE L1 -10 6281 5943 372 293 108 32 chr3 205849588 205849745 -21674833 + MIR SINE MIR 94 262 0 289 301 39 71 chr3 205849751 205849908 -21674670 - MIR SINE MIR -67 141 32 24 0 0 29 chr3 205850485 205850504 -21674074 + AT_rich Low_complexity Low_complexity 1 20 -14 1830 183 3 3 chr3 205850504 205850821 -21673757 + 7SLRNA srpRNA srpRNA 1 317 -3 24 0 0 29 chr3 205850821 205850836 -21673742 + AT_rich Low_complexity Low_complexity 20 34 0 1079 135 35 20 chr3 205852737 205852937 -21671641 + L1PA16 LINE L1 5963 6165 -1 320 298 80 86 chr3 205853114 205853600 -21670978 + L1M2 LINE L1 650 1132 -5717 856 213 35 20 chr3 205853820 205854017 -21670561 + MLT1A2 LTR MaLR 171 370 -4 660 148 37 52 chr3 205854266 205854401 -21670177 - FLAM_C SINE Alu 0 133 1 268 210 12 12 chr3 205854532 205854613 -21669965 + L1MC5 LINE L1 7626 7706 -255 537 263 34 29 chr3 205854675 205854884 -21669694 + L1MC5 LINE L1 7704 7913 -48 2055 150 126 11 chr3 205855318 205855699 -21668879 - MSTA LTR MaLR 0 428 4 23 54 0 0 chr3 205859345 205859382 -21665196 + AT_rich Low_complexity Low_complexity 1 37 0 26 82 0 0 chr3 205859417 205859478 -21665100 + AT_rich Low_complexity Low_complexity 1 61 0 213 307 40 13 chr3 205859529 205859604 -21664974 - L2 LINE L2 -15 3257 3181 464 326 28 17 chr3 205860004 205860182 -21664396 - MIR SINE MIR -78 184 5 23 0 0 0 chr3 205861677 205861700 -21662878 + AT_rich Low_complexity Low_complexity 1 23 0 2325 81 10 0 chr3 205863511 205863807 -21660771 - AluY SINE Alu -12 299 1 348 325 74 33 chr3 205863877 205864120 -21660458 + MIR SINE MIR 2 254 -8 27 0 0 0 chr3 205864465 205864492 -21660086 + AT_rich Low_complexity Low_complexity 1 27 0 31 82 0 0 chr3 205864631 205864704 -21659874 + AT_rich Low_complexity Low_complexity 1 73 0 410 292 146 10 chr3 205864705 205864993 -21659585 - L1ME4a LINE L1 -293 5828 5502 393 337 40 40 chr3 205865049 205865349 -21659229 - L1MC/D LINE L1 -686 5556 5257 22 0 0 0 chr3 205865422 205865444 -21659134 + AT_rich Low_complexity Low_complexity 1 22 0 800 233 12 0 chr3 205865444 205865607 -21658971 + MER58B DNA MER1_type 172 336 -5 295 186 80 0 chr3 205865813 205865926 -21658652 + AluSc SINE Alu 2 123 -176 282 264 31 54 chr3 205866427 205866556 -21658022 + MLT1L LTR MaLR 158 283 -332 228 67 0 0 chr3 205866599 205866629 -21657949 + (CA)n Simple_repeat Simple_repeat 2 31 0 272 209 42 116 chr3 205867004 205867263 -21657315 - Charlie7 DNA MER1_type -19 2593 2354 523 277 51 0 chr3 205867268 205867445 -21657133 - Charlie7 DNA MER1_type -880 1732 1547 651 99 0 0 chr3 205867457 205867548 -21657030 - AluSc SINE Alu -13 296 206 247 197 66 0 chr3 205867556 205867617 -21656961 - Charlie7 DNA MER1_type -1075 1537 1473 376 310 122 11 chr3 205867642 205867929 -21656649 - Charlie7 DNA MER1_type -2289 323 5 865 217 33 19 chr3 205869160 205869372 -21655206 + MER99 DNA DNA 612 826 -2 437 270 48 53 chr3 205869779 205869968 -21654610 - MIR SINE MIR -67 195 8 207 209 0 0 chr3 205872411 205872454 -21652124 + (TA)n Simple_repeat Simple_repeat 1 43 0 429 276 207 0 chr3 205873161 205873306 -21651272 - MIR3 SINE MIR -4 204 30 2426 84 7 0 chr3 205873723 205874032 -21650546 - AluSp SINE Alu 0 313 3 24 77 0 0 chr3 205874351 205874403 -21650175 + AT_rich Low_complexity Low_complexity 1 52 0 348 175 12 25 chr3 205874846 205874926 -21649652 - HsTC2 DNA Tc2 -1819 79 1 227 271 68 43 chr3 205874980 205875230 -21649348 + L1ME4a LINE L1 5795 6052 -69 582 148 28 26 chr3 205875946 205876078 -21648500 - L1M1 LINE L1 -6920 569 3 418 283 85 24 chr3 205876444 205876773 -21647805 + L1MC5 LINE L1 7569 7917 -44 334 268 31 31 chr3 205876877 205876974 -21647604 + MIR3 SINE MIR 99 195 -13 363 263 247 0 chr3 205876988 205877178 -21647400 - MER102b DNA MER1_type -11 330 94 607 127 19 127 chr3 205878653 205878811 -21645767 + FLAM_C SINE Alu 1 141 -2 762 246 98 10 chr3 205879983 205880280 -21644298 - L1ME4a LINE L1 -226 5895 5573 334 317 59 0 chr3 205880645 205880746 -21643832 - L2 LINE L2 -4 3268 3162 393 278 69 43 chr3 205881090 205881511 -21643067 + L1P LINE L1 2147 2578 -3568 480 81 0 0 chr3 205882111 205882173 -21642405 - Alu SINE Alu -255 63 2 2096 93 24 17 chr3 205882238 205882529 -21642049 - AluSq SINE Alu -20 293 1 1981 136 86 29 chr3 205882596 205883014 -21641564 - LTR56 LTR ERV1 0 445 4 3443 104 8 68 chr3 205883359 205883947 -21640631 - MER41A LTR ERV1 0 554 2 219 167 0 0 chr3 205884907 205884949 -21639629 + CT-rich Low_complexity Low_complexity 1 42 0 25 51 0 0 chr3 205885371 205885410 -21639168 + AT_rich Low_complexity Low_complexity 1 39 0 252 86 0 0 chr3 205885827 205885862 -21638716 + (T)n Simple_repeat Simple_repeat 1 35 0 4682 174 26 34 chr3 205885941 205886439 -21638139 - L1 LINE L1 -901 5245 4745 1186 201 99 34 chr3 205886439 205886762 -21637816 - MER2 DNA MER2_type 0 344 1 4682 174 26 34 chr3 205886762 205886953 -21637625 - L1 LINE L1 -1401 4745 4554 1989 185 29 27 chr3 205886953 205887397 -21637181 - MER65A LTR ERV1 0 445 1 4682 174 26 34 chr3 205887397 205887725 -21636853 - L1 LINE L1 -1592 4554 4235 24 0 0 0 chr3 205888072 205888096 -21636482 + AT_rich Low_complexity Low_complexity 1 24 0 2040 95 11 0 chr3 205888437 205888701 -21635877 - AluSx SINE Alu -17 295 29 22 0 0 0 chr3 205889054 205889076 -21635502 + AT_rich Low_complexity Low_complexity 1 22 0 24 0 0 0 chr3 205889697 205889721 -21634857 + AT_rich Low_complexity Low_complexity 1 24 0 22 70 0 0 chr3 205890040 205890083 -21634495 + AT_rich Low_complexity Low_complexity 1 43 0 233 288 17 0 chr3 205890456 205890515 -21634063 - L2 LINE L2 -2 3270 3211 24 32 0 0 chr3 205891215 205891246 -21633332 + AT_rich Low_complexity Low_complexity 1 31 0 2247 92 0 3 chr3 205893523 205893806 -21630772 - AluY SINE Alu -29 282 1 2133 141 0 0 chr3 205893808 205894113 -21630465 - AluSx SINE Alu -3 309 5 448 245 191 37 chr3 205894425 205894613 -21629965 - MIR SINE MIR -38 224 8 2378 88 51 23 chr3 205896501 205896855 -21627723 - THE1B LTR MaLR 0 364 1 1891 140 3 7 chr3 205897595 205897887 -21626691 + AluSx SINE Alu 13 303 -9 422 188 188 0 chr3 205897911 205898012 -21626566 - MER103 DNA DNA -46 120 1 513 230 95 10 chr3 205898559 205898733 -21625845 - MIR SINE MIR -63 145 16 367 324 63 21 chr3 205898762 205898904 -21625674 + MER5A DNA MER1_type 40 187 -2 1299 274 76 30 chr3 205899802 205900273 -21624305 + MLT1J LTR MaLR 4 496 -15 2037 96 68 0 chr3 205900810 205901090 -21623488 - AluSq SINE Alu -14 299 1 2186 116 0 0 chr3 205901138 205901447 -21623131 - AluSx SINE Alu 0 309 1 1742 82 82 0 chr3 205902687 205902918 -21621660 - AluSq SINE Alu -63 250 1 2186 116 0 0 chr3 205902966 205903275 -21621303 - AluSx SINE Alu 0 309 1 1531 221 86 20 chr3 205904677 205905084 -21619494 - MER63B DNA MER1_type -2 434 1 368 324 182 0 chr3 205906937 205907107 -21617471 - MIR SINE MIR -12 250 50 194 310 199 37 chr3 205907643 205907859 -21616719 + MIR SINE MIR 12 262 0 209 256 0 0 chr3 205908360 205908403 -21616175 + GA-rich Low_complexity Low_complexity 3 45 0 622 244 148 26 chr3 205908611 205908840 -21615738 - MIR SINE MIR 0 262 6 1786 166 39 21 chr3 205908976 205909314 -21615264 - MER2 DNA MER2_type 0 344 1 2316 94 0 3 chr3 205910111 205910408 -21614170 - AluSc SINE Alu -13 296 1 301 244 61 46 chr3 205910424 205910555 -21614023 - L1MEc LINE L1 -5453 943 811 961 313 20 34 chr3 205910832 205911276 -21613302 - L1MEc LINE L1 -5923 473 36 273 225 56 45 chr3 205912631 205912720 -21611858 + L2 LINE L2 3216 3305 -8 341 266 110 18 chr3 205913315 205913424 -21611154 - L3 LINE CR1 -367 1210 1092 1874 203 17 32 chr3 205913443 205913851 -21610727 + MLT2D LTR ERVL 1 402 -12 861 133 55 88 chr3 205914192 205914373 -21610205 + AluJo SINE Alu 1 175 -137 2510 57 0 0 chr3 205914610 205914906 -21609672 + AluY SINE Alu 1 296 -15 21 0 0 0 chr3 205915300 205915321 -21609257 + AT_rich Low_complexity Low_complexity 1 21 0 253 288 59 17 chr3 205916076 205916194 -21608384 - L1 LINE L1 -1127 5019 4897 1983 268 110 38 chr3 205916252 205917560 -21607018 - L1 LINE L1 -1778 4368 2967 690 160 60 7 chr3 205917622 205917772 -21606806 - L1MA10 LINE L1 -2 6332 6175 636 211 43 34 chr3 205917772 205917984 -21606594 - L1ME1 LINE L1 -161 6023 5809 260 243 27 14 chr3 205917984 205918058 -21606520 - MER58B DNA MER1_type 0 341 267 2621 128 5 16 chr3 205918083 205918506 -21606072 - L1PB2 LINE L1 -3 6148 5731 861 203 144 5 chr3 205918524 205918746 -21605832 - MER58B DNA MER1_type -77 264 12 1201 185 23 0 chr3 205918759 205918975 -21605603 - L1ME1 LINE L1 -363 5803 5583 4390 159 19 3 chr3 205919568 205920311 -21604267 - L1PA12 LINE L1 -5130 2451 1697 225 0 0 0 chr3 205920355 205920380 -21604198 + (GGGTG)n Simple_repeat Simple_repeat 5 29 0 287 341 49 4 chr3 205920507 205920733 -21603845 - L1PA12 LINE L1 -5512 2069 1834 314 313 77 48 chr3 205920767 205920975 -21603603 - HAL1 LINE L1 -1187 1320 1107 1714 209 34 28 chr3 205922291 205922679 -21601899 + LTR40b LTR ERVL 63 452 -10 667 275 62 0 chr3 205924388 205924581 -21599997 + MIR SINE MIR 58 262 0 634 200 44 172 chr3 205925001 205925451 -21599127 + LTR37B LTR ERV1 35 468 0 869 215 61 23 chr3 205925724 205925938 -21598640 + MER58A DNA MER1_type 2 223 -1 2263 173 21 52 chr3 205925940 205926012 -21598566 - MLT1C LTR MaLR -2 465 392 2349 79 10 0 chr3 205926012 205926303 -21598275 + AluY SINE Alu 1 294 -17 2263 173 21 52 chr3 205926303 205926709 -21597869 - MLT1C LTR MaLR -75 392 2 209 195 49 0 chr3 205927073 205927114 -21597464 - MIR3 SINE MIR -52 156 114 228 412 23 0 chr3 205927376 205927507 -21597071 + L1M2 LINE L1 665 798 -6051 8301 200 48 24 chr3 205927948 205931401 -21593177 + L1PB4 LINE L1 620 4246 -2602 336 24 0 0 chr3 205931401 205931442 -21593136 + (TAA)n Simple_repeat Simple_repeat 3 43 0 8301 200 48 24 chr3 205931442 205932825 -21591753 + L1PB4 LINE L1 4246 5595 -1253 710 110 42 8 chr3 205932825 205932943 -21591635 + L1PA15 LINE L1 6044 6165 0 4382 155 49 8 chr3 205932943 205933743 -21590835 + L1PB4 LINE L1 6024 6856 -2 210 143 0 0 chr3 205933859 205933894 -21590684 + (TA)n Simple_repeat Simple_repeat 1 35 0 28 0 0 0 chr3 205934080 205934108 -21590470 + AT_rich Low_complexity Low_complexity 1 28 0 3633 40 5 0 chr3 205935664 205936108 -21588470 + L1PA4 LINE L1 5710 6155 0 6371 120 107 7 chr3 205936279 205936594 -21587984 - Tigger3b DNA MER2_type -1797 1231 949 185 65 32 0 chr3 205936594 205936625 -21587953 + (TGAG)n Simple_repeat Simple_repeat 1 32 0 6371 120 107 7 chr3 205936625 205937424 -21587154 - Tigger3b DNA MER2_type -2079 949 6 260 269 234 0 chr3 205940881 205941022 -21583556 + MIR SINE MIR 73 246 -16 246 111 0 0 chr3 205941368 205941404 -21583174 - MADE1 DNA Mariner -44 36 1 915 203 124 0 chr3 205941458 205941762 -21582816 - L1P5 LINE L1 -683 5473 5114 1312 186 123 4 chr3 205941762 205942031 -21582547 - AluJo SINE Alu -11 301 1 915 203 124 0 chr3 205942031 205942083 -21582495 - L1P5 LINE L1 -1042 5114 5070 950 148 0 0 chr3 205942084 205942233 -21582345 + L1PB4 LINE L1 5996 6144 -12 23 0 0 0 chr3 205943452 205943475 -21581103 + AT_rich Low_complexity Low_complexity 1 23 0 886 196 40 67 chr3 205945202 205945427 -21579151 - MER20 DNA MER1_type 0 219 1 27 73 0 0 chr3 205946105 205946160 -21578418 + AT_rich Low_complexity Low_complexity 1 55 0 209 315 130 0 chr3 205947436 205947528 -21577050 - L2 LINE L2 -806 2508 2405 2352 73 3 19 chr3 205948936 205949249 -21575329 + AluY SINE Alu 1 308 -3 23 33 0 0 chr3 205950135 205950165 -21574413 + AT_rich Low_complexity Low_complexity 1 30 0 405 230 48 24 chr3 205953135 205953261 -21571317 - MIR SINE MIR -89 173 45 1926 109 11 4 chr3 205953648 205953946 -21570632 + AluSx SINE Alu 6 305 0 228 326 179 49 chr3 205955003 205955310 -21569268 - L2 LINE L2 -36 3236 2890 5989 159 51 9 chr3 205955891 205957451 -21567127 - L1MC1 LINE L1 -5 6328 4697 256 176 73 29 chr3 205957482 205957550 -21567028 + MLT1K LTR MaLR 518 588 0 25 0 0 0 chr3 205957774 205957799 -21566779 + AT_rich Low_complexity Low_complexity 1 25 0 1613 170 73 20 chr3 205957804 205958146 -21566432 - MER46B DNA MER2_type -1 235 1 1705 181 78 118 chr3 205958146 205958323 -21566255 + MLT2B1 LTR ERVL 6 188 -332 1681 147 55 0 chr3 205958323 205958596 -21565982 + AluJb SINE Alu 1 288 -24 1705 181 78 118 chr3 205958596 205958954 -21565624 + MLT2B1 LTR ERVL 188 520 0 213 39 0 0 chr3 205959977 205960003 -21564575 + (CA)n Simple_repeat Simple_repeat 2 27 0 1379 242 97 46 chr3 205960414 205960662 -21563916 - L2 LINE L2 0 3313 3079 2206 70 28 3 chr3 205960662 205960992 -21563586 - AluY SINE Alu 0 337 1 1379 242 97 46 chr3 205960992 205961366 -21563212 - L2 LINE L2 -234 3079 2662 2486 83 3 0 chr3 205961512 205961824 -21562754 + AluSp SINE Alu 1 313 0 289 314 102 8 chr3 205961884 205962002 -21562576 + MIR3 SINE MIR 78 206 -2 375 23 0 0 chr3 205963134 205963178 -21561400 + (CA)n Simple_repeat Simple_repeat 2 45 0 2642 123 16 0 chr3 205963445 205963828 -21560750 - MER1A DNA MER1_type 0 529 141 1571 146 33 57 chr3 205964034 205964335 -21560243 - AluJo SINE Alu -18 294 1 1594 225 20 37 chr3 205964676 205965081 -21559497 - MLT2D LTR ERVL -12 402 5 321 224 0 0 chr3 205965145 205965212 -21559366 + L3 LINE CR1 1144 1210 -367 273 225 56 45 chr3 205965808 205965897 -21558681 - L2 LINE L2 -8 3305 3216 1268 106 11 0 chr3 205968075 205968254 -21556324 - AluSg/x SINE Alu -4 308 128 374 338 96 7 chr3 205968304 205968440 -21556138 - L2 LINE L2 -4 3268 3121 258 304 32 24 chr3 205968434 205968559 -21556019 - MIR SINE MIR 0 262 137 * 201 74 0 0 chr3 205968586 205968613 -21555965 + (T)n Simple_repeat Simple_repeat 1 27 0 280 339 89 16 chr3 205968615 205968739 -21555839 - MIR SINE MIR -125 137 5 2936 117 60 8 chr3 205968900 205969386 -21555192 - MER9 LTR ERVK 0 511 1 30 0 0 0 chr3 205969639 205969669 -21554909 + AT_rich Low_complexity Low_complexity 1 30 0 1515 177 0 64 chr3 205969719 205970046 -21554532 + AluJo SINE Alu 4 309 -3 204 292 0 0 chr3 205970052 205970100 -21554478 + L2 LINE L2 2298 2345 -969 187 355 43 0 chr3 205970237 205970330 -21554248 + L2 LINE L2 2521 2617 -697 436 357 60 17 chr3 205970364 205970599 -21553979 + MIR SINE MIR 6 250 -12 505 329 174 19 chr3 205970618 205970992 -21553586 - MLT1K LTR MaLR -6 582 151 193 367 75 0 chr3 205971081 205971201 -21553377 + L2 LINE L2 2615 2743 -571 349 292 133 78 chr3 205971552 205971949 -21552629 + MLT1K LTR MaLR 147 565 -23 189 343 139 15 chr3 205973042 205973179 -21551399 - MIR SINE MIR -39 223 70 21 0 0 0 chr3 205974696 205974717 -21549861 + AT_rich Low_complexity Low_complexity 1 21 0 1321 153 71 67 chr3 205974935 205975217 -21549361 - AluJo SINE Alu -23 289 7 233 291 165 21 chr3 205975346 205975481 -21549097 - MIR SINE MIR -45 163 12 24 77 0 0 chr3 205975824 205975876 -21548702 + AT_rich Low_complexity Low_complexity 1 52 0 594 301 97 9 chr3 205976232 205976448 -21548130 + MIR SINE MIR 6 240 -22 466 259 14 35 chr3 205976478 205976621 -21547957 - L1ME LINE L1 -495 5626 5487 701 268 0 74 chr3 205976635 205976824 -21547754 + MIR SINE MIR 40 211 -51 2318 97 6 0 chr3 205976824 205977135 -21547443 + AluSq SINE Alu 1 313 0 701 268 0 74 chr3 205977135 205977176 -21547402 + MIR SINE MIR 211 253 -9 182 231 0 0 chr3 205977193 205977232 -21547346 - MIR SINE MIR -59 149 111 369 379 69 25 chr3 205977876 205978238 -21546340 + L3b LINE CR1 1182 1559 -24 222 150 0 0 chr3 205978417 205978457 -21546121 + (TC)n Simple_repeat Simple_repeat 1 40 0 226 346 20 59 chr3 205980459 205980612 -21543966 + L2 LINE L2 3126 3272 0 236 305 132 28 chr3 205980820 205981138 -21543440 - L2 LINE L2 -341 2973 2623 23 54 0 0 chr3 205981476 205981513 -21543065 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr3 205982087 205982108 -21542470 + AT_rich Low_complexity Low_complexity 1 21 0 262 115 39 0 chr3 205982488 205982540 -21542038 + GA-rich Low_complexity Low_complexity 2 55 0 552 306 55 37 chr3 205983618 205983889 -21540689 + L1ME LINE L1 5280 5555 -566 30 27 0 0 chr3 205983901 205983938 -21540640 + AT_rich Low_complexity Low_complexity 1 37 0 770 65 0 0 chr3 205983938 205984045 -21540533 - L1PA14 LINE L1 -3 6158 6052 213 317 0 37 chr3 205984091 205984173 -21540405 - L2 LINE L2 0 3313 3235 213 283 0 0 chr3 205984470 205984523 -21540055 + L3 LINE CR1 1410 1462 -115 380 294 118 24 chr3 205984644 205984940 -21539638 + L1MD2 LINE L1 4487 4810 -1336 581 382 57 36 chr3 205985411 205985694 -21538884 - L2 LINE L2 -96 3217 2918 1893 176 0 0 chr3 205985694 205985995 -21538583 - AluJb SINE Alu -9 303 3 581 382 57 36 chr3 205985995 205986208 -21538370 - L2 LINE L2 -395 2918 2711 302 265 0 0 chr3 205986220 205986288 -21538290 + L1MD2 LINE L1 5550 5617 -547 726 176 8 0 chr3 205986299 205986418 -21538160 - FLAM_A SINE Alu -17 125 6 428 195 12 0 chr3 205986426 205986508 -21538070 + L1MD2 LINE L1 5608 5690 -474 2905 279 30 105 chr3 205986508 205987366 -21537212 + L1MC3 LINE L1 6368 7289 -496 347 268 12 0 chr3 205987366 205987448 -21537130 + MLT1F1 LTR MaLR 43 125 -442 2905 279 30 105 chr3 205987448 205987850 -21536728 + L1MC3 LINE L1 7289 7584 -201 2326 93 3 0 chr3 205987850 205988150 -21536428 + AluSg SINE Alu 1 301 -9 2905 279 30 105 chr3 205988150 205988331 -21536247 + L1MC3 LINE L1 7584 7777 -8 372 198 39 26 chr3 205988315 205988504 -21536074 + L1MD2 LINE L1 5657 5743 -421 * 2152 199 99 113 chr3 205988515 205989292 -21535286 - LTR41 LTR ERVL -7 766 1 444 175 129 105 chr3 205989356 205989527 -21535051 + L1ME2 LINE L1 5971 6145 -19 1107 329 68 48 chr3 205989774 205990263 -21534315 - L2 LINE L2 -614 2700 2186 1550 145 97 51 chr3 205990263 205990636 -21533942 + MLT1B LTR MaLR 1 390 0 1107 329 68 48 chr3 205990636 205990964 -21533614 - L2 LINE L2 -1128 2186 1866 333 0 0 0 chr3 205991033 205991070 -21533508 + (CA)n Simple_repeat Simple_repeat 2 38 0 279 0 0 0 chr3 205991069 205991100 -21533478 + (GA)n Simple_repeat Simple_repeat 2 32 0 * 793 155 18 0 chr3 205991328 205991480 -21533098 - L1PB1 LINE L1 -283 5868 5710 559 205 133 29 chr3 205991482 205991692 -21532886 - MER58 DNA MER1_type -2156 264 33 605 193 31 75 chr3 205991727 205991955 -21532623 - L1ME LINE L1 -366 5800 5583 355 259 41 74 chr3 205992524 205992767 -21531811 - HAL1 LINE L1 -946 1561 1327 8058 168 24 2 chr3 205992771 205993425 -21531153 - L1PA13 LINE L1 -14 6149 5511 198 71 0 0 chr3 205993425 205993453 -21531125 + (TTTTA)n Simple_repeat Simple_repeat 1 28 0 8058 168 24 2 chr3 205993453 205995063 -21529515 - L1PA13 LINE L1 -652 5511 3826 2638 133 30 0 chr3 205995063 205995468 -21529110 + THE1-int LTR MaLR 1080 1496 -84 10365 128 11 16 chr3 205995570 205997195 -21527383 - LTR57-int LTR ERVL -3727 1616 1 295 197 45 0 chr3 205997202 205997268 -21527310 - LTR57 LTR ERVL -7 404 336 195 262 97 58 chr3 205997304 205997407 -21527171 + MIR3 SINE MIR 58 164 -44 382 54 0 0 chr3 205997677 205997733 -21526845 - L1PA2 LINE L1 0 6155 6100 10923 67 15 1 chr3 205997733 205999224 -21525354 - L1P LINE L1 -2982 3164 1652 7451 90 11 12 chr3 205999324 206000441 -21524137 + L1P LINE L1 2162 3276 -2870 10525 124 10 27 chr3 206000446 206002102 -21522476 + L1P LINE L1 13 1639 -4507 728 73 0 0 chr3 206002202 206002298 -21522280 + MER9 LTR ERVK 416 511 0 381 266 127 64 chr3 206002482 206002655 -21521923 + MER5A DNA MER1_type 3 186 -3 329 167 28 0 chr3 206003296 206003368 -21521210 + GA-rich Low_complexity Low_complexity 4 77 0 708 144 0 0 chr3 206004489 206004593 -21519985 + U6 snRNA snRNA 1 104 -3 377 113 16 0 chr3 206004775 206004837 -21519741 - Charlie5 DNA MER1_type 0 2619 2557 310 291 71 55 chr3 206004982 206005164 -21519414 + L2 LINE L2 2874 3058 -214 1357 133 26 30 chr3 206005187 206005470 -21519108 + L1MC2 LINE L1 5684 5965 -379 7649 158 40 38 chr3 206005570 206006041 -21518537 + L1MA7 LINE L1 3754 4223 -2068 796 164 0 8 chr3 206006041 206006175 -21518403 + FLAM_C SINE Alu 1 133 0 7649 158 40 38 chr3 206006175 206007454 -21517124 + L1MA7 LINE L1 4223 5529 -762 252 88 0 0 chr3 206007454 206007488 -21517090 - THE1B LTR MaLR -5 359 326 7649 158 40 38 chr3 206007488 206008039 -21516539 + L1MA7 LINE L1 5529 6078 -213 1175 74 6 25 chr3 206008046 206008209 -21516369 - THE1-int LTR MaLR -70 1510 1351 789 172 88 15 chr3 206008184 206008388 -21516190 + L1MA7 LINE L1 6071 6289 -2 * 493 262 8 0 chr3 206008805 206008931 -21515647 + L1ME3 LINE L1 6027 6153 -9 3596 88 2 8 chr3 206009039 206009526 -21515052 + MER41A LTR ERV1 71 554 0 308 274 146 58 chr3 206009631 206009905 -21514673 + HAL1 LINE L1 62 359 -2148 2026 254 103 39 chr3 206009986 206010852 -21513726 + HAL1 LINE L1 1544 2464 -43 195 332 63 106 chr3 206011073 206011404 -21513174 - L3 LINE CR1 -1197 380 64 226 354 39 0 chr3 206011692 206011819 -21512759 + L2 LINE L2 2544 2675 -639 21 36 0 0 chr3 206012274 206012302 -21512276 + AT_rich Low_complexity Low_complexity 1 28 0 1499 185 42 11 chr3 206012923 206013209 -21511369 + AluJb SINE Alu 1 295 -17 294 56 0 0 chr3 206013356 206013392 -21511186 - MLT2C2 LTR ERVL 0 414 379 2340 163 14 10 chr3 206013444 206013457 -21511121 - MLT2C2 LTR ERVL -44 420 409 950 16 23 8 chr3 206013457 206013586 -21510992 + (TAGA)n Simple_repeat Simple_repeat 3 133 0 2340 163 14 10 chr3 206013586 206013990 -21510588 - MLT2C2 LTR ERVL -55 409 1 18274 178 35 29 chr3 206014759 206019749 -21504829 + L1PA13 LINE L1 1 5048 -1766 249 83 0 0 chr3 206019749 206019785 -21504793 + (CA)n Simple_repeat Simple_repeat 1 36 0 18274 178 35 29 chr3 206019785 206021543 -21503035 + L1PA13 LINE L1 5048 6793 -21 350 95 16 0 chr3 206021872 206021935 -21502643 - L1MB7 LINE L1 -16 6168 6105 250 154 0 0 chr3 206022035 206022074 -21502504 - L1MB5 LINE L1 -115 6059 6021 636 211 15 78 chr3 206022568 206022772 -21501806 + MLT1K LTR MaLR 398 588 0 1733 137 47 78 chr3 206022922 206023309 -21501269 - THE1C LTR MaLR 0 375 1 21 36 0 0 chr3 206024247 206024275 -21500303 + AT_rich Low_complexity Low_complexity 1 28 0 1023 207 53 0 chr3 206024472 206024680 -21499898 + MER20 DNA MER1_type 1 219 0 1686 169 41 89 chr3 206024741 206025156 -21499422 - MLT1E LTR MaLR -2 591 197 211 226 19 0 chr3 206025171 206025224 -21499354 + L2 LINE L2 3256 3309 -4 213 315 37 9 chr3 206025422 206025530 -21499048 - MIR SINE MIR -57 205 95 1978 276 84 49 chr3 206025549 206026331 -21498247 + L1M4b LINE L1 5 814 -6045 895 139 76 32 chr3 206026899 206027057 -21497521 + AluSg/x SINE Alu 66 230 -82 279 0 0 0 chr3 206027157 206027188 -21497390 + (CA)n Simple_repeat Simple_repeat 2 32 0 219 389 0 0 chr3 206027236 206027308 -21497270 - L2 LINE L2 -2713 601 530 11718 143 36 13 chr3 206028019 206028184 -21496394 + L1M1 LINE L1 1020 1180 -6385 2153 119 140 11 chr3 206028184 206028563 -21496015 - MSTA LTR MaLR 0 428 1 11718 143 36 13 chr3 206028563 206030374 -21494204 + L1M1 LINE L1 1180 3043 -4522 198 444 15 0 chr3 206030521 206030654 -21493924 + L2 LINE L2 2688 2822 -492 1854 169 0 10 chr3 206030693 206031006 -21493572 + AluJb SINE Alu 1 310 -2 22 35 0 0 chr3 206031609 206031638 -21492940 + AT_rich Low_complexity Low_complexity 1 29 0 370 281 116 7 chr3 206032059 206032205 -21492373 + MIR SINE MIR 20 181 -81 534 252 0 9 chr3 206032207 206032322 -21492256 + L2 LINE L2 3193 3306 -7 278 302 47 12 chr3 206032378 206032464 -21492114 - MIR3 SINE MIR -9 199 111 1996 156 7 0 chr3 206032519 206032827 -21491751 + AluSx SINE Alu 3 312 0 30 59 0 0 chr3 206032827 206032878 -21491700 + AT_rich Low_complexity Low_complexity 1 51 0 278 268 72 0 chr3 206032892 206032989 -21491589 + MER113 DNA MER1_type? 1 104 -417 18327 143 19 36 chr3 206033294 206034536 -21490042 + L1P1 LINE L1 1947 3208 -2947 207 0 0 0 chr3 206034536 206034559 -21490019 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 18327 143 19 36 chr3 206034559 206036986 -21487592 + L1P1 LINE L1 3208 5552 -603 2018 34 0 0 chr3 206036986 206037251 -21487327 + L1PA3 LINE L1 5911 6176 0 405 252 25 23 chr3 206037687 206037819 -21486759 - MIR3 SINE MIR -7 201 69 1243 164 135 48 chr3 206038661 206038973 -21485605 + MER44D DNA MER2_type 1 609 0 1755 181 10 3 chr3 206039083 206039381 -21485197 + AluSx SINE Alu 1 300 -12 228 326 43 35 chr3 206039392 206039533 -21485045 - MIR SINE MIR 0 262 121 489 230 184 0 chr3 206039537 206039689 -21484889 + MIR SINE MIR 83 262 0 351 250 13 0 chr3 206039687 206039763 -21484815 - MIR SINE MIR -155 107 31 * 234 269 94 88 chr3 206040419 206040590 -21483988 - MIR SINE MIR -58 150 2 2227 113 7 0 chr3 206041994 206042295 -21482283 - AluSg SINE Alu -7 303 1 306 318 0 0 chr3 206042845 206042933 -21481645 - L1MC4 LINE L1 -1338 6704 6617 300 297 0 22 chr3 206042860 206042951 -21481627 + L1MC4 LINE L1 6614 6702 -1340 * 1911 176 162 19 chr3 206042962 206043139 -21481439 - MLT2B2 LTR ERVL -20 495 345 350 45 0 76 chr3 206043139 206043205 -21481373 + L1MA3 LINE L1 6245 6305 0 1911 176 162 19 chr3 206043205 206043460 -21481118 - MLT2B2 LTR ERVL -170 345 1 244 262 439 0 chr3 206043490 206043597 -21480981 - L3 LINE CR1 -375 1202 1049 2984 147 29 9 chr3 206043628 206044173 -21480405 - L1PB4 LINE L1 0 6156 5601 2019 148 23 18 chr3 206044173 206044556 -21480022 - L1MC1 LINE L1 0 6333 5948 191 406 88 23 chr3 206044941 206045202 -21479376 - L3 LINE CR1 -1265 312 35 187 308 39 0 chr3 206045228 206045280 -21479298 - L2 LINE L2 -2 3270 3217 214 351 48 88 chr3 206045591 206045842 -21478736 - L2 LINE L2 -498 2816 2576 1582 171 67 4 chr3 206045906 206046175 -21478403 + AluSx SINE Alu 1 286 -26 1077 272 93 46 chr3 206046462 206046937 -21477641 + MLT1J LTR MaLR 13 509 -2 2100 131 0 0 chr3 206046991 206047281 -21477297 + AluSq SINE Alu 1 290 -23 276 170 80 0 chr3 206047406 206047506 -21477072 + (TA)n Simple_repeat Simple_repeat 2 109 0 270 271 0 0 chr3 206047531 206047601 -21476977 + MIR SINE MIR 180 249 -13 2457 284 25 102 chr3 206049341 206050789 -21473789 + L1M3b LINE L1 1 1337 -4944 3102 191 46 10 chr3 206050798 206051583 -21472995 + L1M3b LINE L1 2957 3769 -2581 438 292 26 0 chr3 206051683 206051796 -21472782 + MIR SINE MIR 40 155 -107 2530 107 0 24 chr3 206051812 206052185 -21472393 - THE1B LTR MaLR 0 364 1 635 24 12 0 chr3 206052185 206052267 -21472311 - THE1B-int LTR MaLR 0 1580 1498 493 289 213 14 chr3 206052890 206053159 -21471419 - L2 LINE L2 -227 3086 2768 633 247 121 4 chr3 206054801 206055032 -21469546 - HAL1 LINE L1 -1 2506 2249 21 36 0 0 chr3 206055366 206055394 -21469184 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr3 206055740 206055769 -21468809 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr3 206056510 206056540 -21468038 + AT_rich Low_complexity Low_complexity 1 30 0 23 0 0 0 chr3 206056748 206056771 -21467807 + AT_rich Low_complexity Low_complexity 1 23 0 2181 125 7 0 chr3 206057574 206057878 -21466700 - AluSx SINE Alu -6 306 1 4368 42 24 0 chr3 206059810 206060351 -21464227 - L1PA5 LINE L1 -5 6149 5596 6263 130 35 62 chr3 206060451 206061669 -21462909 + MER52C LTR ERV1 95 1278 0 2814 121 55 0 chr3 206061669 206062174 -21462404 + L1M1 LINE L1 3040 3572 -3993 6015 91 11 3 chr3 206062174 206063033 -21461545 + L1MA1 LINE L1 5428 6292 -10 22 0 0 0 chr3 206063055 206063077 -21461501 + AT_rich Low_complexity Low_complexity 1 22 0 1812 138 38 7 chr3 206063269 206063558 -21461020 + AluJb SINE Alu 1 298 -14 245 282 0 47 chr3 206063576 206063661 -21460917 + Charlie8 DNA MER1_type 143 223 -2194 303 333 0 40 chr3 206063746 206063872 -21460706 + MIR3 SINE MIR 46 166 -42 455 238 10 0 chr3 206064637 206064738 -21459840 + MER5A DNA MER1_type 9 110 -79 593 140 174 39 chr3 206064743 206064921 -21459657 + L1MA3 LINE L1 10 211 -7354 * 5896 127 16 27 chr3 206064919 206066170 -21458408 + L1MA3 LINE L1 6406 7641 -83 5709 148 30 14 chr3 206066184 206066540 -21458038 - L1PB1 LINE L1 -1 6150 5801 306 0 0 0 chr3 206066540 206066574 -21458004 + (TG)n Simple_repeat Simple_repeat 2 35 0 5709 148 30 14 chr3 206066574 206068081 -21456497 - L1PB1 LINE L1 -350 5801 4266 687 91 0 0 chr3 206068081 206068179 -21456399 + L1MA3 LINE L1 7626 7724 0 933 188 73 26 chr3 206068248 206068440 -21456138 + MSTD LTR MaLR 2 202 -194 4097 148 30 1 chr3 206068545 206069717 -21454861 - L1PA16 LINE L1 -271 5895 4702 5352 191 10 15 chr3 206069722 206070868 -21453710 + L1 LINE L1 3520 4659 -1487 209 281 16 16 chr3 206071217 206071281 -21453297 + MIR3 SINE MIR 137 200 -8 11372 163 18 11 chr3 206071669 206073542 -21451036 + LTR57-int LTR ERVL 1677 3563 -1780 548 175 55 2 chr3 206073643 206073763 -21450815 + MSTD LTR MaLR 287 388 -8 306 254 236 0 chr3 206073784 206073949 -21450629 + MIR SINE MIR 28 224 -5 3930 22 0 0 chr3 206074221 206074677 -21449901 - L1PA4 LINE L1 -1722 4424 3969 8058 25 0 2 chr3 206074677 206076436 -21448142 + L1PA4 LINE L1 4436 6193 0 800 152 0 14 chr3 206076824 206076962 -21447616 + U8 snRNA snRNA 1 136 0 21 36 0 0 chr3 206077209 206077237 -21447341 + AT_rich Low_complexity Low_complexity 1 28 0 266 141 56 56 chr3 206078476 206078547 -21446031 - L1PA16 LINE L1 -9 6157 6087 10507 155 18 8 chr3 206078649 206080310 -21444268 + LTR57-int LTR ERVL 3651 5328 -15 2397 134 48 8 chr3 206080316 206080489 -21444089 + LTR57 LTR ERVL 1 166 -245 390 21 0 0 chr3 206080489 206080536 -21444042 + (CA)n Simple_repeat Simple_repeat 1 47 0 2397 134 48 8 chr3 206080536 206080757 -21443821 + LTR57 LTR ERVL 166 411 0 703 278 173 15 chr3 206080992 206081391 -21443187 + L1ME4a LINE L1 5426 5887 -234 181 376 54 0 chr3 206081620 206081713 -21442865 - L2 LINE L2 -249 3023 2926 1090 233 28 0 chr3 206081888 206082102 -21442476 - MLT1A1 LTR MaLR -12 353 134 1540 201 92 9 chr3 206082102 206082430 -21442148 + MSTD LTR MaLR 1 355 -41 302 45 0 45 chr3 206082488 206082532 -21442046 + MSTD LTR MaLR 368 409 -19 * 648 191 33 13 chr3 206082506 206082658 -21441920 - MLT1A1 LTR MaLR -207 158 4 12093 116 8 57 chr3 206082849 206085331 -21439247 + L1P3 LINE L1 4 2459 -4002 505 73 0 0 chr3 206085336 206085404 -21439174 + Alu SINE Alu 1 68 -242 326 318 48 58 chr3 206086777 206086966 -21437612 - MIR3 SINE MIR -20 188 2 286 301 0 0 chr3 206087369 206087452 -21437126 + MIR SINE MIR 58 140 -122 212 231 0 0 chr3 206087545 206087584 -21436994 - L2 LINE L2 -2485 829 791 2639 30 3 0 chr3 206087636 206087939 -21436639 + AluY SINE Alu 1 304 -7 746 208 68 29 chr3 206087944 206088151 -21436427 - MIR SINE MIR -28 234 20 1506 279 115 24 chr3 206088274 206089089 -21435489 + L2 LINE L2 2404 3293 -20 322 303 19 58 chr3 206091149 206091260 -21433318 + L2 LINE L2 3165 3270 -43 2127 99 0 14 chr3 206091260 206091544 -21433034 + AluSg SINE Alu 31 310 0 322 303 19 58 chr3 206091544 206091587 -21432991 + L2 LINE L2 3270 3313 0 213 290 16 0 chr3 206091720 206091782 -21432796 - MIR SINE MIR 0 262 200 431 332 89 21 chr3 206092256 206092491 -21432087 + MIR SINE MIR 1 251 -11 2342 128 55 15 chr3 206093468 206093829 -21430749 + MLT2D LTR ERVL 1 381 -33 450 0 0 0 chr3 206093829 206093879 -21430699 + (CA)n Simple_repeat Simple_repeat 2 51 0 2342 128 55 15 chr3 206093879 206093915 -21430663 + MLT2D LTR ERVL 381 414 0 1260 190 117 4 chr3 206093984 206094258 -21430320 - MER58B DNA MER1_type 0 341 37 279 347 41 0 chr3 206094690 206094788 -21429790 + L2 LINE L2 3134 3235 -37 219 167 0 0 chr3 206094795 206094837 -21429741 + (TA)n Simple_repeat Simple_repeat 2 43 0 1991 126 3 22 chr3 206094944 206095262 -21429316 + AluSx SINE Alu 1 312 0 297 0 0 0 chr3 206096562 206096595 -21427983 + (TG)n Simple_repeat Simple_repeat 2 34 0 2700 131 65 2 chr3 206097757 206098237 -21426341 + L1MB3 LINE L1 5671 6180 -3 2793 78 10 123 chr3 206098478 206098858 -21425720 + MER9 LTR ERVK 1 314 -197 691 23 0 0 chr3 206098858 206098945 -21425633 + L1PA2 LINE L1 6068 6154 -1 2793 78 10 123 chr3 206098945 206099061 -21425517 + MER9 LTR ERVK 314 441 -70 443 153 0 0 chr3 206099206 206099278 -21425300 + L1MC2 LINE L1 6120 6191 -153 1119 305 120 11 chr3 206100836 206101285 -21423293 - LTR33 LTR ERVL 0 521 24 772 277 48 28 chr3 206101305 206101554 -21423024 - MLT1K LTR MaLR -5 583 330 1268 106 11 0 chr3 206101563 206101742 -21422836 + AluSg/x SINE Alu 128 308 -4 2200 95 7 7 chr3 206103134 206103430 -21421148 - AluSc SINE Alu -13 296 1 345 241 60 30 chr3 206103446 206103579 -21420999 - L1MEc LINE L1 -5453 943 807 865 287 44 85 chr3 206103618 206104300 -21420278 - L1MEc LINE L1 -5707 689 36 22 0 0 0 chr3 206104993 206105015 -21419563 + AT_rich Low_complexity Low_complexity 1 22 0 452 312 156 59 chr3 206105537 206106196 -21418382 - L2 LINE L2 0 3313 2554 244 292 154 56 chr3 206106256 206106523 -21418055 + L2 LINE L2 2205 2497 -817 712 269 75 47 chr3 206107163 206107416 -21417162 + LTR33 LTR ERVL 11 270 -251 472 267 27 20 chr3 206107426 206107572 -21417006 + LTR33 LTR ERVL 371 517 -4 23 68 0 0 chr3 206108830 206108874 -21415704 + AT_rich Low_complexity Low_complexity 1 44 0 227 314 8 83 chr3 206109128 206109249 -21415329 - L2 LINE L2 0 3272 3161 1734 168 52 22 chr3 206109414 206109778 -21414800 - THE1C LTR MaLR 0 375 1 462 197 222 0 chr3 206109921 206110038 -21414540 - MER5A DNA MER1_type -10 179 37 513 298 105 21 chr3 206110129 206110367 -21414211 + MIR SINE MIR 5 262 0 2366 82 0 3 chr3 206111128 206111422 -21413156 + AluY SINE Alu 1 293 -18 638 126 0 0 chr3 206111833 206111920 -21412658 + L1P LINE L1 12 98 -6048 * 5334 113 23 39 chr3 206111918 206112798 -21411780 + L1P LINE L1 623 1488 -4658 4707 22 0 0 chr3 206112796 206113415 -21411163 - L1PA3 LINE L1 -708 5447 4829 * 6178 10 1 0 chr3 206113415 206114108 -21410470 + L1PA3 LINE L1 5458 6155 0 24803 58 1 5 chr3 206114113 206115004 -21409574 + L1P LINE L1 1469 2361 -3785 2417 87 0 0 chr3 206115004 206115303 -21409275 + AluY SINE Alu 1 299 -12 24803 58 1 5 chr3 206115303 206117645 -21406933 + L1P LINE L1 2361 4692 -1454 1941 196 40 35 chr3 206118440 206118864 -21405714 + Charlie1a DNA MER1_type 30 455 -1000 599 251 47 33 chr3 206118861 206119076 -21405502 + Charlie1a DNA MER1_type 702 919 -536 * 729 166 89 77 chr3 206119076 206119245 -21405333 + AluJo SINE Alu 1 171 -141 2037 198 59 20 chr3 206119255 206119795 -21404783 + Charlie1a DNA MER1_type 895 1455 0 29 0 0 0 chr3 206119839 206119868 -21404710 + AT_rich Low_complexity Low_complexity 1 29 0 1328 157 12 4 chr3 206120331 206120573 -21404005 - L1MA8 LINE L1 -24 6267 6024 442 248 78 68 chr3 206120686 206120892 -21403686 + MIR SINE MIR 53 260 -2 210 71 0 0 chr3 206121098 206121126 -21403452 + (T)n Simple_repeat Simple_repeat 1 28 0 405 247 73 7 chr3 206121439 206121589 -21402989 - MIR SINE MIR -15 247 88 684 121 0 26 chr3 206122436 206122552 -21402026 - L1PA13 LINE L1 -5 6158 6046 183 258 134 31 chr3 206124408 206124505 -21400073 - L2 LINE L2 0 3313 3207 351 268 32 16 chr3 206124580 206124703 -21399875 + L1MC4 LINE L1 7916 8040 -2 269 307 94 31 chr3 206125088 206125215 -21399363 + L2 LINE L2 3138 3272 0 27 0 0 0 chr3 206126331 206126358 -21398220 + AT_rich Low_complexity Low_complexity 1 27 0 237 33 0 0 chr3 206128065 206128095 -21396483 + (GA)n Simple_repeat Simple_repeat 2 31 0 * 381 43 0 0 chr3 206128094 206128141 -21396437 + (TG)n Simple_repeat Simple_repeat 1 47 0 387 105 0 0 chr3 206129636 206129693 -21394885 + (A)n Simple_repeat Simple_repeat 1 57 0 206 333 13 0 chr3 206130551 206130629 -21393949 + (TA)n Simple_repeat Simple_repeat 1 79 0 35 0 0 0 chr3 206130982 206131017 -21393561 + AT_rich Low_complexity Low_complexity 1 35 0 528 321 40 36 chr3 206131088 206131337 -21393241 + MIR SINE MIR 13 262 0 247 288 8 83 chr3 206131619 206131709 -21392869 - MER5B DNA MER1_type -51 127 49 1871 136 24 3 chr3 206131709 206132003 -21392575 + AluSx SINE Alu 1 300 -12 247 288 8 83 chr3 206132003 206132044 -21392534 - MER5B DNA MER1_type -129 49 6 1517 220 10 0 chr3 206132903 206133194 -21391384 - AluJb SINE Alu -18 294 1 1433 207 81 3 chr3 206133325 206133634 -21390944 + MER58B DNA MER1_type 9 341 0 443 205 211 62 chr3 206133643 206133804 -21390774 - MER5A DNA MER1_type -1 188 4 1888 134 4 0 chr3 206134027 206134295 -21390283 - AluSx SINE Alu -39 273 5 221 214 0 100 chr3 206134595 206134665 -21389913 + MIR3 SINE MIR 123 185 -23 508 291 92 5 chr3 206138075 206138271 -21386307 - MIR SINE MIR -49 213 1 301 278 49 35 chr3 206138305 206138449 -21386129 + MER103 DNA DNA 8 153 -13 2110 154 3 0 chr3 206138758 206139069 -21385509 - AluJo SINE Alu 0 312 1 192 248 18 41 chr3 206139159 206139290 -21385288 - MIR SINE MIR -51 211 32 311 241 13 13 chr3 206139475 206139554 -21385024 + MIR SINE MIR 33 111 -151 1232 173 45 130 chr3 206139792 206140192 -21384386 + MLT1A2 LTR MaLR 1 366 -8 1863 216 54 84 chr3 206140408 206140967 -21383611 - MER119 DNA MER1_type -41 542 1 396 40 0 0 chr3 206141033 206141083 -21383495 + (TG)n Simple_repeat Simple_repeat 1 50 0 339 25 0 0 chr3 206141082 206141122 -21383456 + (GA)n Simple_repeat Simple_repeat 1 40 0 * 5799 200 18 38 chr3 206142199 206143804 -21380774 + L1MB4 LINE L1 3916 5454 -726 201 39 0 0 chr3 206143804 206143830 -21380748 + (CA)n Simple_repeat Simple_repeat 2 27 0 5799 200 18 38 chr3 206143830 206144538 -21380040 + L1MB4 LINE L1 5454 6175 -5 2709 29 3 0 chr3 206144750 206145057 -21379521 - AluY SINE Alu -3 308 1 2606 45 0 0 chr3 206145481 206145789 -21378789 - AluY SINE Alu -3 308 1 628 289 81 9 chr3 206146703 206146914 -21377664 - MIR SINE MIR -34 228 3 243 224 24 112 chr3 206147030 206147155 -21377423 - MER103 DNA DNA -24 142 29 1517 75 142 4 chr3 206147464 206147704 -21376874 - L1MA1 LINE L1 0 6302 6030 207 186 0 0 chr3 206148697 206148740 -21375838 + (TG)n Simple_repeat Simple_repeat 2 44 0 637 282 75 0 chr3 206149087 206149261 -21375317 + MIR SINE MIR 41 227 -35 335 276 83 45 chr3 206149261 206149417 -21375161 + MLT1J2 LTR MaLR 1 162 -288 273 318 47 41 chr3 206149473 206149643 -21374935 + MLT1J2 LTR MaLR 266 436 -14 21 0 0 0 chr3 206149922 206149943 -21374635 + AT_rich Low_complexity Low_complexity 1 21 0 242 239 34 86 chr3 206150784 206150901 -21373677 - MIR SINE MIR -49 213 103 925 181 37 5 chr3 206150984 206151172 -21373406 + MIR SINE MIR 68 261 -1 200 365 0 0 chr3 206151201 206151264 -21373314 - MIR SINE MIR -180 82 20 576 159 80 18 chr3 206151501 206151614 -21372964 - FRAM SINE Alu -19 157 38 2064 101 24 24 chr3 206151744 206152081 -21372497 - L1PA14 LINE L1 -11 6150 5814 24 32 0 0 chr3 206152099 206152130 -21372448 + AT_rich Low_complexity Low_complexity 1 31 0 452 88 0 0 chr3 206152134 206152202 -21372376 - L1PA14 LINE L1 -334 5829 5762 348 140 18 0 chr3 206152201 206152258 -21372320 + L1P4 LINE L1 5647 5704 -457 * 240 268 18 0 chr3 206152279 206152335 -21372243 - L2 LINE L2 0 3272 3216 1114 160 5 29 chr3 206152871 206153077 -21371501 - MER3 DNA MER1_type 0 209 9 1596 208 7 0 chr3 206154328 206154616 -21369962 + AluJb SINE Alu 1 290 -22 2329 80 3 13 chr3 206154897 206155196 -21369382 - AluSp SINE Alu -17 296 1 183 129 0 0 chr3 206156821 206156852 -21367726 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 219 69 0 0 chr3 206157969 206157998 -21366580 + (T)n Simple_repeat Simple_repeat 1 29 0 410 241 46 51 chr3 206158704 206158920 -21365658 + MER113 DNA MER1_type? 3 217 -304 441 269 50 0 chr3 206159045 206159164 -21365414 + L2 LINE L2 3188 3312 -1 441 242 0 40 chr3 206159266 206159365 -21365213 + L2 LINE L2 3214 3308 -5 429 20 0 0 chr3 206159498 206159548 -21365030 + (TAAA)n Simple_repeat Simple_repeat 3 52 0 37 107 0 0 chr3 206160585 206160734 -21363844 + AT_rich Low_complexity Low_complexity 1 149 0 33 25 0 0 chr3 206160798 206160838 -21363740 + AT_rich Low_complexity Low_complexity 1 40 0 247 203 76 13 chr3 206161604 206161635 -21362943 + LTR66 LTR ERVL 361 389 -221 279 0 0 0 chr3 206161635 206161666 -21362912 + (TC)n Simple_repeat Simple_repeat 2 32 0 247 203 76 13 chr3 206161666 206161713 -21362865 + LTR66 LTR ERVL 389 444 -166 361 170 52 26 chr3 206161713 206161866 -21362712 + (TA)n Simple_repeat Simple_repeat 1 157 0 333 0 0 0 chr3 206161867 206161904 -21362674 + (TC)n Simple_repeat Simple_repeat 2 38 0 312 27 0 0 chr3 206161903 206161940 -21362638 + (TA)n Simple_repeat Simple_repeat 2 38 0 * 649 219 0 0 chr3 206161940 206162059 -21362519 - FLAM_C SINE Alu -13 120 2 266 304 10 0 chr3 206162101 206162203 -21362375 - L1M4 LINE L1 -2667 3479 3377 25 0 0 0 chr3 206162218 206162243 -21362335 + AT_rich Low_complexity Low_complexity 1 25 0 3845 124 0 2 chr3 206162280 206162860 -21361718 - L1PB1 LINE L1 -3 6148 5570 3676 170 5 3 chr3 206162860 206163847 -21360731 + L1PB1 LINE L1 4589 5579 -572 21 0 0 0 chr3 206163854 206163875 -21360703 + AT_rich Low_complexity Low_complexity 1 21 0 2058 123 7 7 chr3 206163878 206164186 -21360392 + AluSc SINE Alu 1 308 -1 195 204 0 0 chr3 206164267 206164316 -21360262 + CT-rich Low_complexity Low_complexity 2 50 0 674 140 9 0 chr3 206164409 206164523 -21360055 - L1MA9 LINE L1 -8 6304 6190 273 292 69 7 chr3 206164702 206164846 -21359732 - L1M4 LINE L1 -3303 2843 2691 378 332 72 10 chr3 206165063 206165355 -21359223 - L1M4 LINE L1 -3531 2615 2306 739 251 63 31 chr3 206165375 206165598 -21358980 - L2 LINE L2 -502 2812 2583 617 279 104 34 chr3 206166152 206166328 -21358250 + L1MEd LINE L1 750 912 -5217 2269 102 3 0 chr3 206166328 206166623 -21357955 + AluSp SINE Alu 1 296 -17 617 279 104 34 chr3 206166623 206166932 -21357646 + L1MEd LINE L1 912 1198 -4931 2053 206 36 5 chr3 206166932 206167345 -21357233 - MSTB LTR MaLR 0 426 1 617 279 104 34 chr3 206167345 206167583 -21356995 + L1MEd LINE L1 1198 1509 -4620 245 118 0 0 chr3 206167587 206167621 -21356957 + Alu SINE Alu 247 280 -20 3333 248 138 52 chr3 206167695 206169134 -21355444 + L1MEd LINE L1 2379 4046 -2083 1626 200 5 70 chr3 206169134 206169534 -21355044 + MLT1A2 LTR MaLR 1 374 0 3333 248 138 52 chr3 206169534 206170132 -21354446 + L1MEd LINE L1 4046 4591 -1538 226 301 98 41 chr3 206170427 206170550 -21354028 - MIR SINE MIR -59 149 20 207 341 59 37 chr3 206170700 206170835 -21353743 + L2 LINE L2 2932 3069 -203 1071 254 33 0 chr3 206170860 206171100 -21353478 + MIR SINE MIR 3 250 -12 880 319 92 33 chr3 206171118 206171920 -21352658 - L2 LINE L2 -8 3305 2457 2390 104 0 0 chr3 206172120 206172427 -21352151 - AluSx SINE Alu -5 307 1 189 267 0 0 chr3 206172428 206172473 -21352105 + MIR SINE MIR 213 257 -5 293 318 69 71 chr3 206172537 206172897 -21351681 - L2 LINE L2 -207 3065 2710 330 26 0 0 chr3 206173156 206173195 -21351383 + (GA)n Simple_repeat Simple_repeat 2 40 0 2160 101 21 3 chr3 206173537 206173824 -21350754 + AluSc SINE Alu 1 292 -17 21 57 0 0 chr3 206174090 206174125 -21350453 + AT_rich Low_complexity Low_complexity 1 35 0 6923 176 12 4 chr3 206174319 206176604 -21347974 + L1PA16 LINE L1 3855 6157 -9 387 0 0 0 chr3 206177038 206177081 -21347497 + (TA)n Simple_repeat Simple_repeat 1 43 0 337 324 24 6 chr3 206177081 206177251 -21347327 - L1ME4a LINE L1 -241 5880 5708 491 256 74 37 chr3 206177285 206177554 -21347024 - L1ME4a LINE L1 -106 6015 5737 677 200 0 30 chr3 206177561 206177696 -21346882 - FLAM_A SINE Alu 0 142 12 1921 149 7 0 chr3 206178165 206178489 -21346089 + AluSx SINE Alu 1 326 0 229 148 19 19 chr3 206178545 206178599 -21345979 + CT-rich Low_complexity Low_complexity 3 56 0 2092 133 67 14 chr3 206179480 206179826 -21344752 - THE1B LTR MaLR 0 364 1 11966 81 1 16 chr3 206179826 206181430 -21343148 - THE1B-int LTR MaLR 0 1580 1 2205 159 28 14 chr3 206181430 206181789 -21342789 - THE1B LTR MaLR 0 364 1 578 253 113 11 chr3 206182469 206182655 -21341923 - MIR SINE MIR 0 262 58 428 224 0 0 chr3 206182742 206182827 -21341751 - MIR SINE MIR -120 142 58 * 1099 305 88 46 chr3 206182825 206183392 -21341186 - L3 LINE CR1 -88 1489 899 2023 135 0 49 chr3 206183673 206184000 -21340578 - AluSx SINE Alu -1 311 1 674 280 119 31 chr3 206184877 206185231 -21339347 + MLT1K LTR MaLR 127 511 -77 232 148 19 37 chr3 206185403 206185457 -21339121 + LTR66 LTR ERVL 383 435 -175 210 37 0 0 chr3 206185459 206185486 -21339092 + (TATG)n Simple_repeat Simple_repeat 4 30 0 21 0 0 0 chr3 206186425 206186446 -21338132 + AT_rich Low_complexity Low_complexity 1 21 0 1637 149 106 3 chr3 206187448 206187730 -21336848 - AluJo SINE Alu -1 311 1 481 295 29 6 chr3 206188055 206188228 -21336350 - MER5B DNA MER1_type -1 177 1 1753 163 25 0 chr3 206188236 206188519 -21336059 - AluJb SINE Alu -20 292 3 268 333 101 8 chr3 206188603 206188732 -21335846 + MIR SINE MIR 91 231 -31 527 252 47 106 chr3 206188732 206188762 -21335816 - MER102b DNA MER1_type -1087 341 311 2008 100 0 56 chr3 206188762 206189103 -21335475 + AluY SINE Alu 1 323 0 527 252 47 106 chr3 206189103 206189323 -21335255 - MER102b DNA MER1_type -1117 311 103 2007 155 3 0 chr3 206190448 206190752 -21333826 + AluSx SINE Alu 1 305 -7 231 226 0 38 chr3 206191105 206191158 -21333420 + polypyrimidine Low_complexity Low_complexity 3 53 0 446 325 53 11 chr3 206191381 206191569 -21333009 - MIR3 SINE MIR -3 205 10 406 347 42 10 chr3 206191941 206192134 -21332444 + MIR SINE MIR 17 215 -47 319 344 32 0 chr3 206192517 206192610 -21331968 + L2 LINE L2 3194 3289 -24 2271 84 0 3 chr3 206192629 206192913 -21331665 - AluSq SINE Alu -30 283 1 337 331 50 8 chr3 206193313 206193434 -21331144 + L2 LINE L2 3142 3267 -5 551 312 14 14 chr3 206194779 206195000 -21329578 - L1ME LINE L1 -304 5817 5597 225 272 120 54 chr3 206196088 206196180 -21328398 + MIR SINE MIR 32 129 -79 484 227 85 21 chr3 206196191 206196332 -21328246 - L2 LINE L2 -2 3311 3162 919 234 36 50 chr3 206196478 206196756 -21327822 + L2 LINE L2 1678 1951 -1363 780 309 32 0 chr3 206196800 206197049 -21327529 - MIR SINE MIR -4 258 2 * 3037 285 66 16 chr3 206197049 206198299 -21326279 + L2 LINE L2 1955 3272 -41 291 261 39 73 chr3 206198769 206199199 -21325379 - L1ME LINE L1 -743 5403 5045 2866 16 0 0 chr3 206199329 206199647 -21324931 - AluYb8 SINE Alu 0 318 1 266 256 13 0 chr3 206199768 206199846 -21324732 - L1ME LINE L1 -1532 4614 4536 243 199 87 62 chr3 206199955 206200116 -21324462 - L1ME LINE L1 -3317 2829 2665 207 0 0 0 chr3 206200116 206200139 -21324439 + (TG)n Simple_repeat Simple_repeat 1 23 0 467 344 45 24 chr3 206200197 206200531 -21324047 - L1ME LINE L1 -3591 2555 2215 1907 96 85 0 chr3 206200531 206200791 -21323787 - AluSg SINE Alu -14 296 15 693 211 0 26 chr3 206201399 206201551 -21323027 - L2 LINE L2 -275 3038 2891 301 330 93 0 chr3 206201567 206201664 -21322914 + L2 LINE L2 3134 3239 -33 189 241 0 74 chr3 206201812 206201866 -21322712 + MIR SINE MIR 66 115 -147 32 43 0 0 chr3 206201990 206202036 -21322542 + AT_rich Low_complexity Low_complexity 1 46 0 180 214 24 0 chr3 206202082 206202124 -21322454 + L2 LINE L2 3263 3305 -8 389 262 43 53 chr3 206203518 206203705 -21320873 - Charlie8 DNA MER1_type -1996 421 237 180 0 0 0 chr3 206203785 206203805 -21320773 + (TAAAAA)n Simple_repeat Simple_repeat 2 21 0 21 0 0 0 chr3 206203843 206203864 -21320714 + AT_rich Low_complexity Low_complexity 1 21 0 205 50 25 50 chr3 206204404 206204444 -21320134 + (CAAAA)n Simple_repeat Simple_repeat 2 40 0 347 353 63 52 chr3 206206303 206206572 -21318006 + L2 LINE L2 2914 3185 -87 219 290 47 47 chr3 206207848 206207955 -21316623 + MIR SINE MIR 73 179 -83 1850 167 0 14 chr3 206207977 206208270 -21316308 + AluJo SINE Alu 1 289 -23 26523 100 11 2 chr3 206208560 206212416 -21312162 - L1PA7 LINE L1 -853 5293 1405 6384 73 8 2 chr3 206212416 206213268 -21311310 + L1PA7 LINE L1 5285 6141 -13 545 235 161 13 chr3 206213286 206213435 -21311143 + MER5A DNA MER1_type 12 182 -7 21725 194 13 38 chr3 206213560 206217794 -21306784 + L1PA11 LINE L1 10 4091 -2370 5826 60 3 1 chr3 206217794 206218517 -21306061 + L1PA8 LINE L1 5424 6159 -13 21725 194 13 38 chr3 206218517 206219768 -21304810 + L1PA11 LINE L1 4091 5371 -1090 5972 92 12 2 chr3 206219764 206220599 -21303979 + L1PA11 LINE L1 5647 6489 0 * 2010 118 0 40 chr3 206220673 206221002 -21303576 + L1PB4 LINE L1 5592 5907 -249 1182 198 0 0 chr3 206221084 206221316 -21303262 + L1PB4 LINE L1 5923 6154 -2 321 271 47 0 chr3 206221411 206221496 -21303082 + MLT1H1 LTR MaLR 1 89 -466 293 349 51 40 chr3 206221502 206221677 -21302901 + L2 LINE L2 2503 2679 -635 288 294 0 0 chr3 206221711 206221779 -21302799 + L3 LINE CR1 1394 1461 -116 282 261 63 48 chr3 206222302 206222509 -21302069 - L1ME LINE L1 -317 5804 5595 422 209 11 22 chr3 206222973 206223064 -21301514 + MER21B LTR ERV1 1 90 -773 2745 219 122 21 chr3 206223086 206223807 -21300771 + MER21B LTR ERV1 19 812 -51 248 213 288 0 chr3 206224169 206224249 -21300329 + MIR3 SINE MIR 100 202 -6 312 336 7 14 chr3 206224309 206224452 -21300126 - L1ME LINE L1 -2161 5647 5506 275 317 57 53 chr3 206224506 206224787 -21299791 + L1MC4a LINE L1 5630 5911 -1897 2146 120 18 0 chr3 206224817 206225151 -21299427 + L1PA15 LINE L1 5818 6157 -8 312 91 0 0 chr3 206225151 206225195 -21299383 + (TG)n Simple_repeat Simple_repeat 2 45 0 33 0 0 0 chr3 206225393 206225426 -21299152 + AT_rich Low_complexity Low_complexity 1 33 0 408 214 10 0 chr3 206225426 206225529 -21299049 - L1MA9 LINE L1 -19 6293 6190 550 191 16 32 chr3 206225540 206225666 -21298912 - L1MA9 LINE L1 -232 6080 5957 23 0 0 0 chr3 206225836 206225859 -21298719 + AT_rich Low_complexity Low_complexity 1 23 0 33 0 0 0 chr3 206226500 206226533 -21298045 + AT_rich Low_complexity Low_complexity 1 33 0 182 325 32 89 chr3 206227439 206227596 -21296982 - MER5B DNA MER1_type -30 148 1 465 299 30 24 chr3 206227970 206228134 -21296444 + MIR SINE MIR 49 213 -49 21 82 0 0 chr3 206228280 206228329 -21296249 + AT_rich Low_complexity Low_complexity 1 49 0 709 177 14 14 chr3 206229477 206229618 -21294960 - MER5B DNA MER1_type -1 177 37 1618 203 98 50 chr3 206229706 206230188 -21294390 + MLT1D LTR MaLR 1 505 0 24 0 0 0 chr3 206231344 206231368 -21293210 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 206232746 206232769 -21291809 + AT_rich Low_complexity Low_complexity 1 23 0 22 35 0 0 chr3 206234587 206234616 -21289962 + AT_rich Low_complexity Low_complexity 1 29 0 23 0 0 0 chr3 206237019 206237042 -21287536 + AT_rich Low_complexity Low_complexity 1 23 0 819 232 176 20 chr3 206237787 206238181 -21286397 + L1MC4a LINE L1 5476 5584 -537 269 356 57 11 chr3 206238538 206238715 -21285863 - L2 LINE L2 -787 2527 2343 199 28 56 28 chr3 206238883 206238919 -21285659 + (TTTA)n Simple_repeat Simple_repeat 2 38 0 644 191 45 0 chr3 206238922 206239032 -21285546 - FLAM_C SINE Alu -17 116 2 199 353 52 9 chr3 206239413 206239529 -21285049 - L2 LINE L2 -4 3309 3189 230 290 14 109 chr3 206239574 206239712 -21284866 - L2 LINE L2 -220 3052 2928 353 259 43 7 chr3 206240036 206240175 -21284403 - MER103 DNA DNA -10 156 13 770 285 31 17 chr3 206240319 206240554 -21284024 - MIR SINE MIR -13 249 11 323 233 97 19 chr3 206240759 206240862 -21283716 + MIR SINE MIR 114 224 -38 558 212 62 82 chr3 206240871 206241066 -21283512 + MIR SINE MIR 46 245 -17 2354 90 0 0 chr3 206241786 206242087 -21282491 - AluY SINE Alu -10 301 1 1448 196 112 6 chr3 206242206 206242527 -21282051 + MLT1A1 LTR MaLR 7 361 -4 553 234 113 39 chr3 206242531 206242788 -21281790 - L1ME4a LINE L1 -76 6045 5770 208 149 64 32 chr3 206243213 206243307 -21281271 + (TTATA)n Simple_repeat Simple_repeat 1 97 0 2167 128 8 25 chr3 206243337 206243705 -21280873 - L1MA7 LINE L1 -47 6244 5883 1180 187 25 0 chr3 206243706 206243941 -21280637 + L1MA7 LINE L1 5653 5893 -398 409 343 17 0 chr3 206244034 206244197 -21280381 + MIR SINE MIR 60 225 -37 1598 90 0 0 chr3 206244200 206244401 -21280177 + AluSc SINE Alu 96 296 -13 29 0 0 0 chr3 206244407 206244436 -21280142 + AT_rich Low_complexity Low_complexity 1 29 0 189 97 0 32 chr3 206244641 206244672 -21279906 - L3b LINE CR1 -19 1564 1535 534 274 57 17 chr3 206244679 206244854 -21279724 + MER5A DNA MER1_type 6 187 -2 1789 175 0 7 chr3 206245815 206246124 -21278454 - AluJo SINE Alu 0 307 1 22 56 0 0 chr3 206247509 206247545 -21277033 + AT_rich Low_complexity Low_complexity 1 36 0 34 55 0 0 chr3 206248254 206248309 -21276269 + AT_rich Low_complexity Low_complexity 1 55 0 189 74 0 0 chr3 206250223 206250250 -21274328 + (TTCC)n Simple_repeat Simple_repeat 3 29 0 1129 47 35 6 chr3 206250257 206250429 -21274149 + (TTTC)n Simple_repeat Simple_repeat 2 178 0 6005 63 0 0 chr3 206250431 206251192 -21273386 - L1PA8 LINE L1 -3 6169 5409 703 270 54 0 chr3 206254230 206254434 -21270144 + MIR SINE MIR 46 260 -2 183 327 152 24 chr3 206254719 206254884 -21269694 - L2 LINE L2 -5 3308 3123 1511 170 0 41 chr3 206254999 206255295 -21269283 + AluJo SINE Alu 25 309 0 216 111 0 0 chr3 206255574 206255610 -21268968 + (A)n Simple_repeat Simple_repeat 1 36 0 7801 149 16 29 chr3 206256173 206257586 -21266992 - L1P LINE L1 -4750 1396 2 1453 155 16 4 chr3 206257588 206258010 -21266568 - L1P4 LINE L1 -672 5494 5070 547 123 49 16 chr3 206258189 206258311 -21266267 - L1P4 LINE L1 -4616 1530 1405 6375 81 2 5 chr3 206258311 206259183 -21265395 + L1PA5 LINE L1 5285 6154 0 275 241 49 93 chr3 206259199 206259361 -21265217 - L1MC/D LINE L1 -2344 5464 5310 242 191 0 0 chr3 206259391 206259438 -21265140 + L1MA2 LINE L1 6254 6300 -4 180 0 0 0 chr3 206259955 206259975 -21264603 + (TG)n Simple_repeat Simple_repeat 1 20 0 231 322 112 28 chr3 206260022 206260165 -21264413 + MIR SINE MIR 12 166 -96 9990 106 4 0 chr3 206260288 206261982 -21262596 - L1P2 LINE L1 -567 5587 3886 8587 79 18 5 chr3 206262098 206263300 -21261278 + L1PA5 LINE L1 3279 4495 -1651 2604 107 51 5 chr3 206263407 206263827 -21260751 + L1PA5 LINE L1 5685 6125 -29 1082 293 64 14 chr3 206264638 206265075 -21259503 + L1ME4a LINE L1 5390 5848 -273 226 323 24 0 chr3 206265245 206265372 -21259206 - L1ME LINE L1 -415 5706 5577 354 324 70 47 chr3 206265438 206265651 -21258927 - L1ME LINE L1 -2337 5471 5254 256 111 19 0 chr3 206265691 206265745 -21258833 - L1MB4 LINE L1 -2 6178 6124 3002 195 22 8 chr3 206265753 206266432 -21258146 - L1MB4 LINE L1 -22 6290 5577 423 260 71 45 chr3 206267368 206267522 -21257056 + MIR SINE MIR 20 177 -85 870 214 87 15 chr3 206267561 206267757 -21256821 + MER20 DNA MER1_type 1 210 -9 192 269 26 51 chr3 206268127 206268205 -21256373 + MIR SINE MIR 69 144 -118 557 245 148 26 chr3 206269986 206270141 -21254437 + MER45A DNA AcHobo 2 175 -3 210 315 35 0 chr3 206271048 206271160 -21253418 - MIR SINE MIR -65 143 67 357 145 0 0 chr3 206271284 206271346 -21253232 + (TTCC)n Simple_repeat Simple_repeat 1 62 0 201 154 0 0 chr3 206271376 206271415 -21253163 + (TCCA)n Simple_repeat Simple_repeat 4 42 0 2068 100 4 4 chr3 206271899 206272180 -21252398 + AluSp SINE Alu 31 311 -2 24 32 0 0 chr3 206272220 206272251 -21252327 + AT_rich Low_complexity Low_complexity 1 31 0 1971 50 8 0 chr3 206272251 206272493 -21252085 - L1PA5 LINE L1 -22 6132 5889 1345 208 96 3 chr3 206272676 206272989 -21251589 + MER2 DNA MER2_type 1 342 -3 904 322 165 36 chr3 206273123 206273548 -21251030 + L2 LINE L2 1807 2176 -1138 2165 153 68 10 chr3 206273548 206273947 -21250631 + MSTB LTR MaLR 5 426 0 904 322 165 36 chr3 206273947 206274363 -21250215 + L2 LINE L2 2176 2757 -557 398 336 18 96 chr3 206274577 206274857 -21249721 + L2 LINE L2 3015 3272 0 1896 78 0 4 chr3 206275104 206275347 -21249231 + AluY SINE Alu 69 310 -1 380 236 0 19 chr3 206275656 206275762 -21248816 + Charlie5 DNA MER1_type 2 105 -2507 1467 195 40 6 chr3 206275779 206276128 -21248450 + Charlie5 DNA MER1_type 2256 2616 0 721 231 174 5 chr3 206276238 206276450 -21248128 - MIR SINE MIR 0 262 15 188 344 16 0 chr3 206277896 206277957 -21246621 - L2 LINE L2 0 3313 3252 539 126 25 25 chr3 206278416 206278535 -21246043 + CT-rich Low_complexity Low_complexity 3 121 0 2001 138 3 0 chr3 206278537 206278820 -21245758 - AluSx SINE Alu -26 286 3 494 269 56 6 chr3 206279019 206279195 -21245383 - MIR SINE MIR -62 146 3 214 331 50 44 chr3 206279747 206279907 -21244671 - L2 LINE L2 -36 3277 3117 255 218 282 0 chr3 206281035 206281113 -21243465 - MIR SINE MIR -110 152 53 314 205 26 13 chr3 206281242 206281320 -21243258 - MER116 DNA Mariner -1 79 1 830 153 13 0 chr3 206281496 206281653 -21242925 - L1MB2 LINE L1 -3 6168 6010 318 232 61 20 chr3 206281658 206281757 -21242821 - Charlie8 DNA MER1_type -2219 198 96 395 149 14 0 chr3 206281762 206281836 -21242742 - L1MB8 LINE L1 -6 6172 6098 547 181 13 0 chr3 206281836 206281951 -21242627 - L1MB5 LINE L1 -128 6046 5929 24 0 0 0 chr3 206283044 206283068 -21241510 + AT_rich Low_complexity Low_complexity 1 24 0 189 246 7 130 chr3 206283585 206283723 -21240855 - MIR3 SINE MIR -7 201 81 247 261 131 62 chr3 206283973 206284103 -21240475 + MIR SINE MIR 92 230 -32 24 0 0 0 chr3 206285213 206285237 -21239341 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 206285353 206285374 -21239204 + AT_rich Low_complexity Low_complexity 1 21 0 386 247 72 0 chr3 206286891 206286988 -21237590 - L2 LINE L2 -36 3277 3174 208 373 85 33 chr3 206287087 206287240 -21237338 + L2 LINE L2 3112 3272 0 189 338 25 12 chr3 206287274 206287354 -21237224 + MIR3 SINE MIR 92 172 -36 180 77 0 0 chr3 206287913 206287939 -21236639 + (T)n Simple_repeat Simple_repeat 1 26 0 202 152 0 91 chr3 206288577 206288643 -21235935 + A-rich Low_complexity Low_complexity 2 61 0 260 240 0 0 chr3 206290754 206290804 -21233774 + polypyrimidine Low_complexity Low_complexity 3 52 0 441 236 30 65 chr3 206290935 206291110 -21233468 + MIR SINE MIR 40 206 -56 279 277 32 0 chr3 206293611 206293705 -21230873 - L1MB5 LINE L1 -348 5773 5677 539 212 22 101 chr3 206294133 206294202 -21230376 - L1MD3 LINE L1 -39 7956 7883 180 0 0 0 chr3 206294202 206294222 -21230356 + (TTTTA)n Simple_repeat Simple_repeat 2 21 0 1960 122 0 4 chr3 206294224 206294503 -21230075 - AluSx SINE Alu -26 286 9 539 212 22 101 chr3 206294503 206294653 -21229925 - L1MD3 LINE L1 -113 7882 6121 3576 51 2 0 chr3 206294653 206295102 -21229476 - L1PA7 LINE L1 -5 6149 5700 819 68 0 17 chr3 206295102 206295219 -21229359 + L1P LINE L1 5310 5424 -748 352 154 11 11 chr3 206295222 206295313 -21229265 + (TA)n Simple_repeat Simple_repeat 1 91 0 226 119 0 0 chr3 206295313 206295355 -21229223 + LTR66 LTR ERVL 398 439 -171 318 307 0 0 chr3 206295380 206295468 -21229110 + L1MC4 LINE L1 6615 6702 -1340 * 322 283 0 22 chr3 206295389 206295481 -21229097 - L1MC4 LINE L1 -1339 6703 6614 284 286 0 0 chr3 206295497 206295588 -21228990 - L1MC4 LINE L1 -1339 6703 6613 291 154 0 0 chr3 206295590 206295655 -21228923 + (TA)n Simple_repeat Simple_repeat 2 66 0 1979 222 31 84 chr3 206295655 206297047 -21227531 - L1MD2 LINE L1 -246 6113 4797 435 295 47 5 chr3 206297093 206297286 -21227292 - L1ME4a LINE L1 -295 5826 5626 2130 127 0 0 chr3 206297365 206297664 -21226914 - AluSx SINE Alu -13 299 1 233 339 69 29 chr3 206298371 206298545 -21226033 - L2 LINE L2 -536 2778 2598 632 286 18 49 chr3 206298692 206298916 -21225662 + MIR SINE MIR 15 231 -31 377 156 0 0 chr3 206299107 206299171 -21225407 - MER5A DNA MER1_type -84 105 42 531 247 65 53 chr3 206299342 206299392 -21225186 - MIR SINE MIR -44 218 170 1983 88 57 37 chr3 206299392 206299688 -21224890 + AluSx SINE Alu 1 302 -10 531 247 65 53 chr3 206299688 206299807 -21224771 - MIR SINE MIR -92 170 47 408 190 41 67 chr3 206300739 206300934 -21223644 + MER113 DNA MER1_type? 44 233 -288 407 296 166 22 chr3 206302764 206302987 -21221591 + MIR SINE MIR 8 262 0 283 105 35 0 chr3 206303598 206303655 -21220923 + (TCCA)n Simple_repeat Simple_repeat 3 61 0 23 33 0 0 chr3 206304127 206304157 -21220421 + AT_rich Low_complexity Low_complexity 1 30 0 3230 227 23 61 chr3 206304287 206305119 -21219459 + MER21B LTR ERV1 13 812 -51 198 304 18 0 chr3 206305443 206305499 -21219079 - MIR SINE MIR -64 144 88 1566 298 70 15 chr3 206305518 206306062 -21218516 + L1MA9 LINE L1 1542 2115 -5371 1978 315 63 11 chr3 206306109 206307062 -21217516 + L1M3a LINE L1 302 1045 -4910 5892 237 67 24 chr3 206307081 206309267 -21215311 + L1MA9 LINE L1 2387 4734 -2831 2278 154 25 48 chr3 206309267 206309709 -21214869 + MSTB1 LTR MaLR 1 432 0 5892 237 67 24 chr3 206309709 206310388 -21214190 + L1MA9 LINE L1 4734 5383 -2182 * 6306 93 22 26 chr3 206310387 206310537 -21214041 + L1PA10 LINE L1 4813 4962 -1206 2061 118 3 0 chr3 206310537 206310824 -21213754 + AluSp SINE Alu 26 313 0 6306 93 22 26 chr3 206310824 206312056 -21212522 + L1PA10 LINE L1 4962 6168 0 2429 164 59 33 chr3 206312044 206312240 -21212338 + L1MA9 LINE L1 5388 5577 -2154 * 2250 112 3 0 chr3 206312240 206312552 -21212026 + AluSp SINE Alu 1 313 0 2429 164 59 33 chr3 206312552 206314585 -21209993 + L1MA9 LINE L1 5577 7731 0 397 254 9 0 chr3 206314583 206314693 -21209885 - L1ME3 LINE L1 -133 6029 5919 * 213 360 188 18 chr3 206315207 206315590 -21208988 - L2 LINE L2 -641 2673 2226 23 78 0 0 chr3 206316072 206316123 -21208455 + AT_rich Low_complexity Low_complexity 1 51 0 459 325 139 47 chr3 206316161 206316656 -21207922 - L1ME4a LINE L1 -154 5967 5427 270 256 61 49 chr3 206316850 206316932 -21207646 - L2 LINE L2 0 3313 3231 208 338 0 12 chr3 206316933 206317013 -21207565 - L2 LINE L2 -298 2974 2896 509 267 206 29 chr3 206317047 206317421 -21207157 - MLT1H LTR MaLR 0 549 110 182 243 68 14 chr3 206317646 206317720 -21206858 - L2 LINE L2 -571 2743 2666 338 288 125 11 chr3 206317804 206317988 -21206590 - MIR SINE MIR 0 262 58 246 345 119 40 chr3 206318918 206319144 -21205434 - L2 LINE L2 -136 3136 2893 4497 139 7 7 chr3 206319294 206319998 -21204580 + MER50 LTR ERV1 1 704 -30 195 229 21 0 chr3 206320144 206320192 -21204386 + L2 LINE L2 3265 3313 0 1109 267 91 19 chr3 206320194 206320557 -21204021 - MLT1I LTR MaLR -20 389 1 210 71 0 0 chr3 206323470 206323498 -21201080 + (T)n Simple_repeat Simple_repeat 1 28 0 248 242 0 32 chr3 206325055 206325117 -21199461 + L2 LINE L2 3254 3313 0 542 325 88 30 chr3 206325262 206325696 -21198882 - HAL1 LINE L1 -1947 560 102 21 36 0 0 chr3 206325807 206325835 -21198743 + AT_rich Low_complexity Low_complexity 1 28 0 284 190 0 180 chr3 206325848 206325948 -21198630 + MER2 DNA MER2_type 2 83 -262 511 264 138 6 chr3 206326329 206326496 -21198082 - MLT1I LTR MaLR -107 302 114 595 316 27 34 chr3 206327804 206328067 -21196511 - MLT1I LTR MaLR -49 360 100 736 287 73 41 chr3 206328178 206329142 -21195436 - L1ME3 LINE L1 -222 5948 4943 1737 178 0 23 chr3 206329199 206329508 -21195070 - AluJo SINE Alu -10 302 1 354 335 72 0 chr3 206329526 206329693 -21194885 - L1ME3 LINE L1 -1807 4339 4161 651 304 57 48 chr3 206329774 206330488 -21194090 - L1ME3 LINE L1 -2259 3887 3167 2101 98 0 0 chr3 206331493 206331768 -21192810 + AluSq SINE Alu 12 286 -27 203 59 0 29 chr3 206331768 206331802 -21192776 + (TATAA)n Simple_repeat Simple_repeat 2 34 0 742 283 99 70 chr3 206332090 206332606 -21191972 + L1MEc LINE L1 1255 1755 -4641 1849 194 70 13 chr3 206332606 206333003 -21191575 + LTR52 LTR ERVL 1 420 -1 742 283 99 70 chr3 206333003 206333487 -21191091 + L1MEc LINE L1 1755 2284 -4112 1582 270 112 61 chr3 206333664 206334114 -21190464 + L1MEc LINE L1 2503 2929 -3286 515 120 0 0 chr3 206334114 206334189 -21190389 + FLAM SINE Alu 44 118 -25 1582 270 112 61 chr3 206334189 206335410 -21189168 + L1MEc LINE L1 2929 4317 -1898 449 29 0 132 chr3 206335577 206335992 -21188586 + (TATAA)n Simple_repeat Simple_repeat 1 360 0 317 135 45 39 chr3 206335972 206336150 -21188428 + (CATATA)n Simple_repeat Simple_repeat 2 180 0 * 551 30 0 132 chr3 206336159 206336356 -21188222 + (TATAA)n Simple_repeat Simple_repeat 4 174 0 260 123 53 0 chr3 206336356 206336413 -21188165 + (TA)n Simple_repeat Simple_repeat 1 60 0 532 241 14 7 chr3 206336467 206336612 -21187966 + L1MEc LINE L1 4528 4673 -1542 296 269 15 0 chr3 206336718 206336785 -21187793 - MER63 DNA MER1_type -16 1045 978 442 173 144 10 chr3 206336789 206336893 -21187685 - MER63 DNA MER1_type -89 747 4 228 260 7 100 chr3 206336893 206337043 -21187535 + L1MEc LINE L1 4703 4838 -1377 291 326 123 0 chr3 206338459 206338597 -21185981 - MIR SINE MIR -88 174 20 196 282 28 56 chr3 206338590 206338661 -21185917 + L2 LINE L2 3186 3254 -18 * 321 263 113 25 chr3 206338764 206338924 -21185654 - LTR16C LTR ERVL -2 489 316 206 333 182 0 chr3 206339476 206339575 -21185003 - L2 LINE L2 -3 3269 3153 1130 259 25 14 chr3 206339983 206340269 -21184309 - MLT1I LTR MaLR -48 361 73 2109 91 0 7 chr3 206340561 206340836 -21183742 + AluSx SINE Alu 33 305 -7 23 0 0 0 chr3 206341216 206341239 -21183339 + AT_rich Low_complexity Low_complexity 1 23 0 2262 117 3 0 chr3 206341665 206341973 -21182605 - AluSp SINE Alu -4 309 1 315 0 0 0 chr3 206343860 206343895 -21180683 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 402 305 69 29 chr3 206343899 206344080 -21180498 + MIR SINE MIR 26 214 -36 701 254 42 21 chr3 206345850 206346043 -21178535 + L2 LINE L2 3117 3313 0 2096 95 0 0 chr3 206346841 206347105 -21177473 + AluSg SINE Alu 31 294 -16 523 266 35 35 chr3 206347333 206347476 -21177102 + MER5B DNA MER1_type 34 176 -2 994 176 16 11 chr3 206347558 206347746 -21176832 - MER5A DNA MER1_type 0 189 1 395 286 118 22 chr3 206348333 206348527 -21176051 + MIR SINE MIR 16 229 -33 553 286 19 48 chr3 206348673 206348883 -21175695 - MIR SINE MIR -22 240 37 201 352 50 39 chr3 206348892 206349071 -21175507 + L2 LINE L2 1896 2076 -1238 308 313 149 20 chr3 206349075 206349276 -21175302 + L2 LINE L2 2234 2460 -854 6910 84 5 1 chr3 206349493 206351237 -21173341 - L1PA7 LINE L1 0 6154 4412 27 0 0 0 chr3 206352427 206352454 -21172124 + AT_rich Low_complexity Low_complexity 1 27 0 21 36 0 0 chr3 206353944 206353972 -21170606 + AT_rich Low_complexity Low_complexity 1 28 0 210 71 0 0 chr3 206354779 206354807 -21169771 + (A)n Simple_repeat Simple_repeat 1 28 0 221 98 24 0 chr3 206355034 206355075 -21169503 + (GA)n Simple_repeat Simple_repeat 1 42 0 263 265 68 43 chr3 206355145 206355262 -21169316 + L2 LINE L2 2852 2971 -342 534 263 25 0 chr3 206355526 206355644 -21168934 - MIR SINE MIR -129 133 13 192 267 0 0 chr3 206355761 206355806 -21168772 + L2 LINE L2 3266 3310 -3 215 241 19 19 chr3 206356977 206357031 -21167547 - MIR SINE MIR -118 144 91 285 182 0 0 chr3 206357217 206357272 -21167306 + CT-rich Low_complexity Low_complexity 1 55 0 * 971 138 0 17 chr3 206357260 206357441 -21167137 + (TTCTCC)n Simple_repeat Simple_repeat 3 180 0 229 271 0 0 chr3 206357441 206357489 -21167089 + polypyrimidine Low_complexity Low_complexity 6 53 0 1518 170 13 22 chr3 206358005 206358323 -21166255 - MER33 DNA MER1_type 0 324 10 455 363 123 41 chr3 206359340 206359706 -21164872 - L2 LINE L2 0 3272 2877 261 363 99 42 chr3 206359847 206360486 -21164092 - L2 LINE L2 -480 2834 2160 180 77 0 0 chr3 206360673 206360699 -21163879 + (CA)n Simple_repeat Simple_repeat 1 26 0 230 271 0 0 chr3 206360751 206360810 -21163768 + (TA)n Simple_repeat Simple_repeat 1 59 0 364 247 48 34 chr3 206361123 206361269 -21163309 + MIR SINE MIR 61 208 -54 224 294 176 47 chr3 206362096 206362266 -21162312 + MIR SINE MIR 5 196 -66 322 292 34 0 chr3 206363139 206363228 -21161350 + MIR3 SINE MIR 6 97 -111 458 272 38 13 chr3 206363444 206363602 -21160976 - MIR SINE MIR -55 207 46 252 244 11 78 chr3 206364329 206364419 -21160159 + MER5A DNA MER1_type 11 94 -95 240 316 219 7 chr3 206364662 206364817 -21159761 + MIR SINE MIR 5 192 -70 232 293 60 0 chr3 206365549 206365682 -21158896 + L1M4 LINE L1 4461 4601 -1545 979 188 0 0 chr3 206365746 206365900 -21158678 - AluJb SINE Alu -24 288 135 378 0 0 0 chr3 206365900 206365942 -21158636 + (TG)n Simple_repeat Simple_repeat 2 43 0 2016 154 15 15 chr3 206366223 206366560 -21158018 + MER1B DNA MER1_type 1 337 0 2296 161 57 2 chr3 206366609 206367013 -21157565 - MSTB LTR MaLR 0 426 1 227 336 74 20 chr3 206367038 206367282 -21157296 + L1M4 LINE L1 4912 5168 -978 22 80 0 0 chr3 206367954 206368004 -21156574 + AT_rich Low_complexity Low_complexity 1 50 0 2078 129 0 16 chr3 206368244 206368562 -21156016 - AluSq SINE Alu 0 313 1 228 307 53 0 chr3 206368583 206368697 -21155881 - L1M4 LINE L1 -3084 3298 3179 2058 95 54 3 chr3 206368730 206369024 -21155554 - AluSg1 SINE Alu 0 309 1 21 0 0 0 chr3 206369081 206369102 -21155476 + AT_rich Low_complexity Low_complexity 1 21 0 4394 87 8 0 chr3 206369449 206370056 -21154522 - L1PA13 LINE L1 -1 6162 5551 355 245 101 64 chr3 206370178 206370366 -21154212 - L1M4 LINE L1 -3884 2500 2306 562 317 172 39 chr3 206370465 206371441 -21153137 - L2 LINE L2 -2 3311 2176 2243 103 3 3 chr3 206371441 206371765 -21152813 + AluSx SINE Alu 1 312 0 562 317 172 39 chr3 206371765 206371845 -21152733 - L2 LINE L2 -1137 2176 2108 1568 178 10 33 chr3 206372182 206372485 -21152093 + AluJo SINE Alu 1 296 -16 2368 128 65 54 chr3 206372664 206373093 -21151485 - Tigger2a DNA MER2_type 0 434 1 2431 60 0 0 chr3 206373149 206373478 -21151100 + AluY SINE Alu 1 329 0 188 371 14 0 chr3 206373520 206373590 -21150988 + MIR SINE MIR 177 247 -15 570 272 26 10 chr3 206373647 206373842 -21150736 - L2 LINE L2 -423 2891 2694 328 265 0 0 chr3 206373841 206373909 -21150669 + L2 LINE L2 3229 3296 -17 * 324 398 40 6 chr3 206374351 206374527 -21150051 + L3 LINE CR1 1021 1202 -375 254 323 104 27 chr3 206375639 206375859 -21148719 + L2 LINE L2 3075 3311 -2 370 211 174 37 chr3 206375935 206376044 -21148534 - FLAM_C SINE Alu -2 131 8 274 229 35 90 chr3 206376106 206376145 -21148433 - L1ME4a LINE L1 -10 6111 6071 1883 157 3 40 chr3 206376145 206376469 -21148109 + AluJb SINE Alu 1 312 0 274 229 35 90 chr3 206376469 206376573 -21148005 - L1ME4a LINE L1 -50 6071 5976 234 275 63 28 chr3 206376651 206376793 -21147785 - L1ME4a LINE L1 -1974 5834 5688 2454 59 0 10 chr3 206377027 206377334 -21147244 - AluY SINE Alu -7 304 1 2123 126 0 7 chr3 206377384 206377685 -21146893 - AluSx SINE Alu -13 299 1 215 252 59 0 chr3 206377829 206377920 -21146658 - MIR SINE MIR -59 203 105 2171 159 94 40 chr3 206377944 206378423 -21146155 - MLT1D LTR MaLR 0 505 1 26 30 0 0 chr3 206379452 206379485 -21145093 + AT_rich Low_complexity Low_complexity 1 33 0 311 197 0 15 chr3 206380474 206380540 -21144038 + MIR SINE MIR 75 139 -69 1669 145 18 132 chr3 206380861 206381254 -21143324 - MER7A DNA MER2_type 0 346 1 180 277 169 12 chr3 206381296 206381379 -21143199 - MIR SINE MIR -8 254 159 3490 128 4 6 chr3 206381447 206381996 -21142582 - L1MC1 LINE L1 0 6333 5786 1283 200 0 0 chr3 206382509 206382744 -21141834 - L1PA16 LINE L1 -22 6144 5910 737 261 20 25 chr3 206382744 206382947 -21141631 - MIR SINE MIR -2 260 59 293 257 69 52 chr3 206382991 206383098 -21141480 - MIR SINE MIR -87 121 16 207 273 36 0 chr3 206383133 206383188 -21141390 - L2 LINE L2 -3 3269 3213 526 261 0 8 chr3 206383930 206384049 -21140529 - L2 LINE L2 0 3313 3196 417 322 29 0 chr3 206384430 206384604 -21139974 - L1ME LINE L1 -349 5772 5594 21 82 0 0 chr3 206384672 206384721 -21139857 + AT_rich Low_complexity Low_complexity 1 49 0 22 35 0 0 chr3 206384949 206384978 -21139600 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 206385263 206385284 -21139294 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 206385770 206385800 -21138778 + AT_rich Low_complexity Low_complexity 1 30 0 414 335 57 0 chr3 206386285 206386461 -21138117 - L1ME LINE L1 -517 5604 5419 672 257 218 5 chr3 206387573 206387779 -21136799 - MIR SINE MIR 0 262 13 541 288 109 16 chr3 206388506 206388923 -21135655 + L1MC/D LINE L1 5270 5754 -605 336 261 90 9 chr3 206392271 206392382 -21132196 - L2 LINE L2 -2 3270 3151 253 248 20 107 chr3 206393275 206393424 -21131154 + L2 LINE L2 3167 3302 -11 31013 101 9 25 chr3 206393516 206399692 -21124886 + L1PA7 LINE L1 267 6469 0 368 300 6 19 chr3 206400031 206400191 -21124387 + GA-rich Low_complexity Low_complexity 2 159 0 1059 112 0 0 chr3 206400337 206400516 -21124062 + (TG)n Simple_repeat Simple_repeat 2 180 0 321 253 143 58 chr3 206402699 206402853 -21121725 - MIR SINE MIR -6 256 90 200 237 186 0 chr3 206403493 206403552 -21121026 + L2 LINE L2 3203 3272 0 2510 62 0 0 chr3 206403639 206403947 -21120631 + AluY SINE Alu 1 308 -3 672 275 77 26 chr3 206403975 206404208 -21120370 + MIR SINE MIR 8 252 -10 273 286 0 0 chr3 206407022 206407106 -21117472 + T-rich Low_complexity Low_complexity 1 84 0 467 203 125 47 chr3 206407730 206407858 -21116720 + L2 LINE L2 3176 3313 0 508 238 179 13 chr3 206408014 206408165 -21116413 + MER5A DNA MER1_type 14 189 0 825 200 0 0 chr3 206408339 206408469 -21116109 + MER5A DNA MER1_type 1 130 -59 2215 82 14 0 chr3 206408474 206408767 -21115811 - AluY SINE Alu -11 300 4 361 204 71 20 chr3 206409269 206409387 -21115191 + L1M2c LINE L1 1685 1806 -4913 814 214 91 5 chr3 206409406 206409626 -21114952 + L1M2c LINE L1 1953 2191 -4528 307 296 144 15 chr3 206409993 206410125 -21114453 - MIR3 SINE MIR -57 151 3 213 109 0 65 chr3 206412544 206412590 -21111988 + (AATAG)n Simple_repeat Simple_repeat 3 45 0 202 167 12 71 chr3 206412798 206412882 -21111696 + (TTATA)n Simple_repeat Simple_repeat 1 79 0 * 315 193 59 8 chr3 206412820 206412939 -21111639 + (TA)n Simple_repeat Simple_repeat 2 126 0 227 256 33 0 chr3 206412942 206413032 -21111546 + L1MC4 LINE L1 6614 6706 -1336 251 204 0 0 chr3 206413103 206413152 -21111426 - L2 LINE L2 -7 3306 3258 276 185 37 62 chr3 206413346 206413427 -21111151 - MIR SINE MIR -1 261 183 567 290 52 5 chr3 206413499 206413692 -21110886 + MIR SINE MIR 38 239 -23 23 0 0 0 chr3 206415296 206415319 -21109259 + AT_rich Low_complexity Low_complexity 1 23 0 2495 75 0 3 chr3 206415473 206415781 -21108797 - AluSq SINE Alu -6 307 1 2065 171 34 23 chr3 206416819 206416986 -21107592 - MLT1B LTR MaLR 0 390 226 1312 155 39 140 chr3 206416986 206417392 -21107186 - MLT1A1 LTR MaLR 0 365 1 2065 171 34 23 chr3 206417392 206417610 -21106968 - MLT1B LTR MaLR -164 226 1 320 325 107 86 chr3 206418907 206419292 -21105286 - L2 LINE L2 -8 3264 2872 273 335 160 37 chr3 206419693 206420257 -21104321 + L2 LINE L2 2123 2755 -559 304 231 112 52 chr3 206420331 206420465 -21104113 - MIR SINE MIR -103 159 18 192 322 0 17 chr3 206421188 206421247 -21103331 + L2 LINE L2 3237 3294 -19 2070 221 52 22 chr3 206422125 206422677 -21101901 - L1MD3 LINE L1 -23 7972 7404 183 80 0 0 chr3 206425075 206425100 -21099478 + (CA)n Simple_repeat Simple_repeat 2 26 0 278 345 90 17 chr3 206426193 206426370 -21098208 - L3 LINE CR1 -2 1575 1386 1709 65 26 0 chr3 206426392 206426622 -21097956 - L1PA7 LINE L1 0 6154 5919 383 250 33 11 chr3 206426663 206426755 -21097823 + MIR SINE MIR 21 114 -148 * 825 266 112 53 chr3 206426748 206427426 -21097152 + L2 LINE L2 2521 3313 0 251 235 12 35 chr3 206427429 206427514 -21097064 + MIR SINE MIR 180 262 0 2239 199 37 39 chr3 206427983 206428247 -21096331 - MER119 DNA MER1_type -1 582 318 2180 123 0 13 chr3 206428247 206428549 -21096029 - AluSx SINE Alu -14 298 1 2239 199 37 39 chr3 206428549 206428792 -21095786 - MER119 DNA MER1_type -265 318 76 644 182 175 0 chr3 206428812 206428966 -21095612 - MER5A DNA MER1_type 0 189 9 2243 105 7 0 chr3 206429483 206429779 -21094799 + AluSx SINE Alu 1 298 -14 244 178 0 0 chr3 206429925 206429970 -21094608 + L2 LINE L2 3267 3311 -2 25 31 0 0 chr3 206430022 206430054 -21094524 + AT_rich Low_complexity Low_complexity 1 32 0 573 326 98 34 chr3 206430413 206430738 -21093840 + L3 LINE CR1 1133 1478 -99 1237 164 11 76 chr3 206430742 206431005 -21093573 - MLT1B LTR MaLR -3 387 142 23 33 0 0 chr3 206431301 206431331 -21093247 + AT_rich Low_complexity Low_complexity 1 30 0 1992 115 11 65 chr3 206431581 206431937 -21092641 - MER1B DNA MER1_type 0 337 1 47 13 6 0 chr3 206432003 206432101 -21092477 + AT_rich Low_complexity Low_complexity 1 54 0 213 404 50 0 chr3 206433081 206433180 -21091398 - L2 LINE L2 -8 3264 3161 191 293 217 6 chr3 206433897 206434054 -21090524 - MIR SINE MIR -4 258 69 307 209 82 45 chr3 206434717 206434827 -21089751 + MIR SINE MIR 149 262 0 22 35 0 0 chr3 206434827 206434856 -21089722 + AT_rich Low_complexity Low_complexity 1 29 0 505 21 11 63 chr3 206435801 206435896 -21088682 + (TAAA)n Simple_repeat Simple_repeat 3 92 0 577 301 44 35 chr3 206435969 206436172 -21088406 + MIR3 SINE MIR 1 205 -3 43 56 0 0 chr3 206436879 206436950 -21087628 + AT_rich Low_complexity Low_complexity 1 71 0 599 219 36 42 chr3 206437016 206437208 -21087370 + HAL1 LINE L1 27 217 -2290 6045 201 47 20 chr3 206437439 206438852 -21085726 - Charlie1a DNA MER1_type 0 1455 5 663 285 160 24 chr3 206438880 206439043 -21085535 + HAL1 LINE L1 605 744 -1763 261 57 0 0 chr3 206439043 206439078 -21085500 + (CA)n Simple_repeat Simple_repeat 2 36 0 663 285 160 24 chr3 206439078 206439451 -21085127 + HAL1 LINE L1 744 1214 -1293 1333 269 144 22 chr3 206439578 206440273 -21084305 + HAL1 LINE L1 1394 2173 -334 402 194 48 48 chr3 206440273 206440397 -21084181 + HAL1 LINE L1 2384 2507 0 1165 169 48 5 chr3 206440626 206440833 -21083745 + AluJo SINE Alu 78 293 -19 254 173 0 19 chr3 206440857 206440909 -21083669 - L1M3 LINE L1 -647 5687 5637 2367 103 6 0 chr3 206441011 206441352 -21083226 - L1PA8 LINE L1 -140 6032 5690 1212 101 6 17 chr3 206441370 206441548 -21083030 - L1PA8A LINE L1 -283 5848 5673 617 284 49 15 chr3 206441548 206441752 -21082826 + MIR SINE MIR 39 249 -13 1358 202 22 19 chr3 206442013 206442330 -21082248 - AluYb8 SINE Alu 0 318 1 21 0 0 0 chr3 206442425 206442446 -21082132 + AT_rich Low_complexity Low_complexity 1 21 0 225 135 0 0 chr3 206442565 206442602 -21081976 + L1MB1 LINE L1 6130 6166 -2 235 386 14 14 chr3 206442626 206442766 -21081812 + L2 LINE L2 2702 2841 -473 * 397 259 0 0 chr3 206442743 206442828 -21081750 + L2 LINE L2 3229 3313 0 213 94 0 0 chr3 206443161 206443193 -21081385 + (ATG)n Simple_repeat Simple_repeat 2 33 0 644 288 76 25 chr3 206443198 206443396 -21081182 - MIR SINE MIR -9 253 46 218 189 0 0 chr3 206443708 206443745 -21080833 + GA-rich Low_complexity Low_complexity 2 38 0 60 64 0 0 chr3 206445564 206445673 -21078905 + AT_rich Low_complexity Low_complexity 1 109 0 27 0 0 0 chr3 206445781 206445808 -21078770 + AT_rich Low_complexity Low_complexity 1 27 0 426 191 0 85 chr3 206445824 206445918 -21078660 + MIR SINE MIR 59 144 -64 3570 17 0 0 chr3 206446022 206446483 -21078095 + L1PA2 LINE L1 5740 6200 0 2999 193 42 27 chr3 206446492 206447161 -21077417 + L1ME1 LINE L1 5470 6148 -18 506 294 14 21 chr3 206447267 206447410 -21077168 + L2 LINE L2 3168 3309 -4 * 779 297 20 0 chr3 206447406 206447601 -21076977 - MIR SINE MIR -52 210 12 1361 234 60 66 chr3 206448385 206448823 -21075755 + MLT1D LTR MaLR 1 437 -68 769 178 0 15 chr3 206448823 206448958 -21075620 - FLAM_C SINE Alu 0 133 1 1361 234 60 66 chr3 206448958 206449003 -21075575 + MLT1D LTR MaLR 437 481 -24 429 270 84 75 chr3 206449127 206449353 -21075225 - Charlie8 DNA MER1_type -2020 397 170 2004 100 0 81 chr3 206450205 206450525 -21074053 + AluSq SINE Alu 2 295 -18 326 320 20 34 chr3 206450695 206450842 -21073736 - MIR SINE MIR -69 193 49 1453 196 0 0 chr3 206451068 206451313 -21073265 - AluJo SINE Alu -34 278 34 225 108 0 0 chr3 206451393 206451430 -21073148 + (TC)n Simple_repeat Simple_repeat 2 38 0 984 229 0 0 chr3 206452044 206452223 -21072355 + MER63A DNA MER1_type 1 179 -31 234 336 33 25 chr3 206452224 206452346 -21072232 - L2 LINE L2 -456 2858 2736 21 0 0 0 chr3 206452346 206452367 -21072211 + AT_rich Low_complexity Low_complexity 1 21 0 2072 181 18 8 chr3 206452379 206452771 -21071807 + MSTD LTR MaLR 1 396 0 24 0 0 0 chr3 206452976 206453000 -21071578 + AT_rich Low_complexity Low_complexity 1 24 0 604 223 74 79 chr3 206453087 206453518 -21071060 + L1ME4a LINE L1 5478 5906 -215 336 272 29 73 chr3 206453967 206454103 -21070475 - MIR SINE MIR -44 218 89 1163 49 0 0 chr3 206454363 206454505 -21070073 + L1MA1 LINE L1 6155 6296 -6 25 31 0 0 chr3 206454507 206454539 -21070039 + AT_rich Low_complexity Low_complexity 1 32 0 846 188 0 0 chr3 206455205 206455375 -21069203 + GA-rich Low_complexity Low_complexity 1 170 0 32 0 0 0 chr3 206455521 206455553 -21069025 + AT_rich Low_complexity Low_complexity 1 32 0 394 252 384 0 chr3 206456279 206456438 -21068140 - MIR SINE MIR -37 225 6 270 0 0 0 chr3 206457529 206457559 -21067019 + (TGAA)n Simple_repeat Simple_repeat 1 30 0 443 285 49 24 chr3 206457616 206457739 -21066839 + L2 LINE L2 3138 3263 -9 731 181 57 51 chr3 206458852 206459029 -21065549 - MER20 DNA MER1_type 0 219 42 401 318 88 29 chr3 206459955 206460125 -21064453 - MER5A DNA MER1_type -6 183 4 345 104 149 0 chr3 206460446 206460513 -21064065 - L1PA16 LINE L1 -5 6161 6085 198 0 0 0 chr3 206460802 206460824 -21063754 + (A)n Simple_repeat Simple_repeat 1 22 0 23 33 0 0 chr3 206461084 206461114 -21063464 + AT_rich Low_complexity Low_complexity 1 30 0 823 211 11 53 chr3 206461828 206462018 -21062560 - MIR SINE MIR -79 183 2 360 327 39 6 chr3 206462022 206462178 -21062400 + MIR SINE MIR 100 260 -2 218 157 39 0 chr3 206464982 206465033 -21059545 + A-rich Low_complexity Low_complexity 2 54 0 1505 143 0 0 chr3 206465889 206466099 -21058479 + AluSg/x SINE Alu 81 290 -20 281 45 0 45 chr3 206466101 206466145 -21058433 + (GGGAA)n Simple_repeat Simple_repeat 3 44 0 414 319 21 0 chr3 206466352 206466496 -21058082 - MIR3 SINE MIR -15 193 47 2304 81 7 3 chr3 206467897 206468206 -21056372 + AluY SINE Alu 2 311 0 548 246 126 11 chr3 206468662 206468875 -21055703 + MIR SINE MIR 14 250 -12 190 228 169 96 chr3 206469638 206469774 -21054804 - MIR SINE MIR -66 196 51 338 274 69 89 chr3 206469918 206470169 -21054409 + MIR SINE MIR 22 262 0 2166 67 0 64 chr3 206470853 206471179 -21053399 - AluY SINE Alu 0 309 3 22 0 0 0 chr3 206471184 206471206 -21053372 + AT_rich Low_complexity Low_complexity 1 22 0 308 246 18 0 chr3 206471355 206471412 -21053166 + MER69 DNA AcHobo 39 96 -2430 363 231 63 28 chr3 206471426 206471569 -21053009 + MER69 DNA AcHobo 2357 2504 -22 1445 143 0 0 chr3 206472034 206472251 -21052327 + MSTA LTR MaLR 212 428 0 8243 180 29 27 chr3 206472251 206473899 -21050679 + MSTA-int LTR MaLR 1 1651 0 1894 146 58 47 chr3 206473899 206473932 -21050646 + MSTA LTR MaLR 1 32 -396 2311 98 3 0 chr3 206473932 206474227 -21050351 - AluSx SINE Alu -15 297 2 1894 146 58 47 chr3 206474227 206474557 -21050021 + MSTA LTR MaLR 32 368 -60 30 0 0 0 chr3 206474557 206474587 -21049991 + AT_rich Low_complexity Low_complexity 1 30 0 6340 97 19 2 chr3 206474803 206476219 -21048359 - L1PA11 LINE L1 -1 6173 4749 483 306 16 0 chr3 206477420 206477541 -21047037 - MIR SINE MIR -114 148 26 2069 128 0 0 chr3 206477743 206478032 -21046546 + AluSx SINE Alu 1 289 -23 29 0 0 0 chr3 206478032 206478061 -21046517 + AT_rich Low_complexity Low_complexity 1 29 0 475 65 0 0 chr3 206478374 206478436 -21046142 - L1PA4 LINE L1 -14 6141 6080 2300 96 0 0 chr3 206479624 206479916 -21044662 + AluSx SINE Alu 3 294 -18 309 26 0 0 chr3 206479922 206479960 -21044618 + (CAA)n Simple_repeat Simple_repeat 2 39 0 444 319 112 73 chr3 206479997 206480937 -21043641 + L2 LINE L2 2328 3272 0 352 268 158 8 chr3 206483843 206483970 -21040608 + MIR SINE MIR 6 151 -111 23 68 0 0 chr3 206484261 206484305 -21040273 + AT_rich Low_complexity Low_complexity 1 44 0 2226 88 13 13 chr3 206484382 206484689 -21039889 - AluY SINE Alu -4 307 1 201 247 178 0 chr3 206484755 206484828 -21039750 + MIR SINE MIR 118 203 -59 297 330 11 0 chr3 206485590 206485684 -21038894 - MER5A DNA MER1_type -39 150 56 1426 174 28 50 chr3 206485689 206486010 -21038568 + MER58B DNA MER1_type 28 341 0 186 333 45 26 chr3 206486114 206486270 -21038308 + L2 LINE L2 1290 1448 -1866 328 263 235 6 chr3 206486340 206486519 -21038059 + MIR SINE MIR 31 250 -12 227 324 98 59 chr3 206486878 206487134 -21037444 + L2 LINE L2 1836 2101 -1213 309 322 69 20 chr3 206487491 206487693 -21036885 + L2 LINE L2 1799 2010 -1304 213 227 0 0 chr3 206487812 206487856 -21036722 + L2 LINE L2 3265 3308 -5 1443 205 40 13 chr3 206488344 206488720 -21035858 - MER88 LTR ERVL 0 464 79 562 332 34 15 chr3 206488825 206489090 -21035488 + L2 LINE L2 1686 1955 -1359 2031 181 105 28 chr3 206489491 206490061 -21034517 + pTR5 LTR ERV1 738 1351 -1087 2726 169 50 45 chr3 206490161 206490419 -21034159 - L1MB1 LINE L1 -86 5906 5651 2237 110 3 10 chr3 206490419 206490729 -21033849 - AluSc SINE Alu -1 308 1 2726 169 50 45 chr3 206490729 206490934 -21033644 - L1MB1 LINE L1 -341 5651 5448 2139 117 0 0 chr3 206490934 206491240 -21033338 - AluSx SINE Alu 0 306 1 2726 169 50 45 chr3 206491240 206491435 -21033143 - L1MB1 LINE L1 -544 5448 5243 7713 21 2 2 chr3 206491440 206492756 -21031822 - L1PA4 LINE L1 -1 6154 4839 6735 33 0 0 chr3 206492756 206493594 -21030984 + L1PA4 LINE L1 4000 4837 -1309 2501 201 12 34 chr3 206493594 206494011 -21030567 - L1MB1 LINE L1 -744 5248 4847 2372 45 0 0 chr3 206494011 206494300 -21030278 - L1PA5 LINE L1 -3 6151 5863 2501 201 12 34 chr3 206494300 206494557 -21030021 - L1MB1 LINE L1 -1145 4847 4586 2744 117 51 31 chr3 206494564 206495078 -21029500 - L1MA9 LINE L1 -7 6305 5782 357 231 0 13 chr3 206495125 206495203 -21029375 + Tigger5 DNA MER2_type 2 78 -2245 360 247 0 0 chr3 206495206 206495279 -21029299 - Tigger5 DNA MER2_type -6 2317 2245 355 240 0 0 chr3 206495272 206495347 -21029231 + Tigger5 DNA MER2_type 2242 2316 -7 * 2183 157 101 3 chr3 206495348 206495736 -21028842 - MSTB LTR MaLR 0 426 1 378 115 0 0 chr3 206495761 206495822 -21028756 + (TC)n Simple_repeat Simple_repeat 1 61 0 7351 239 49 29 chr3 206495826 206496005 -21028573 - L1MB1 LINE L1 -1913 4057 3883 207 0 0 0 chr3 206496005 206496028 -21028550 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 7351 239 49 29 chr3 206496028 206496850 -21027728 - L1MB1 LINE L1 -2087 3883 3079 1730 111 73 92 chr3 206496850 206497166 -21027412 + AluSg SINE Alu 1 310 0 7351 239 49 29 chr3 206497166 206499264 -21025314 - L1MB1 LINE L1 -2891 3079 1194 1508 230 36 14 chr3 206499264 206499621 -21024957 - MLT1A1 LTR MaLR 0 365 1 7351 239 49 29 chr3 206499621 206500840 -21023738 - L1MB1 LINE L1 -4776 1194 1 389 281 73 81 chr3 206500840 206501100 -21023478 - L2 LINE L2 -611 2703 2446 285 141 203 0 chr3 206501881 206501945 -21022633 + LTR40b LTR ERVL 386 462 0 192 266 57 65 chr3 206502236 206502360 -21022218 - L2 LINE L2 -94 3219 3097 436 335 66 33 chr3 206502559 206502771 -21021807 - MIR SINE MIR -16 246 28 2461 86 0 10 chr3 206502888 206503202 -21021376 - AluSq SINE Alu -2 311 1 315 310 7 26 chr3 206503427 206503582 -21020996 + MER112 DNA MER1_type 10 161 -99 372 43 0 0 chr3 206503596 206503643 -21020935 - AluY SINE Alu -251 57 11 208 265 61 0 chr3 206503690 206503739 -21020839 - MER91A DNA MER1_type -17 179 128 441 319 38 31 chr3 206503739 206503899 -21020679 - MER91A DNA MER1_type -34 162 2 328 336 19 0 chr3 206503899 206504003 -21020575 + CT-rich Low_complexity Low_complexity 4 109 0 3413 144 14 0 chr3 206504074 206504645 -21019933 - L1MB3 LINE L1 0 6183 5605 2308 88 3 0 chr3 206505718 206506003 -21018575 + AluSp SINE Alu 1 286 -27 27 62 0 0 chr3 206506003 206506051 -21018527 + AT_rich Low_complexity Low_complexity 1 48 0 285 251 114 18 chr3 206506112 206506279 -21018299 - L1ME4a LINE L1 -172 5949 5767 682 238 108 39 chr3 206506314 206506545 -21018033 - MIR SINE MIR -3 259 13 391 311 44 6 chr3 206506618 206506798 -21017780 - L1ME4a LINE L1 -437 5684 5498 187 345 26 18 chr3 206512713 206512826 -21011752 - MIR SINE MIR -61 147 34 207 0 0 0 chr3 206514993 206515016 -21009562 + (A)n Simple_repeat Simple_repeat 1 23 0 1703 98 8 21 chr3 206515016 206515250 -21009328 + AluY SINE Alu 1 231 -80 269 308 26 0 chr3 206515728 206515806 -21008772 + L2 LINE L2 3224 3303 -10 1552 142 208 0 chr3 206516216 206516504 -21008074 + MER7A DNA MER2_type 1 346 0 536 369 58 22 chr3 206516685 206517148 -21007430 + L2 LINE L2 2340 2819 -495 322 360 92 0 chr3 206517194 206517347 -21007231 + L2 LINE L2 2911 3077 -195 993 0 0 0 chr3 206518730 206518837 -21005741 - U6 snRNA snRNA 0 107 1 754 194 21 31 chr3 206518898 206519089 -21005489 + MER53 DNA DNA 1 189 0 21 36 0 0 chr3 206519277 206519305 -21005273 + AT_rich Low_complexity Low_complexity 1 28 0 12764 186 37 16 chr3 206519668 206526634 -20997944 + L1PB1 LINE L1 1 6204 -4 333 317 57 62 chr3 206526662 206526763 -20997815 - MIR SINE MIR -1 261 161 2382 162 116 11 chr3 206526763 206527227 -20997351 - MLT2B2 LTR ERVL 0 515 3 333 317 57 62 chr3 206527227 206527352 -20997226 - MIR SINE MIR -101 161 36 1692 172 132 33 chr3 206527493 206527917 -20996661 - MLT1C LTR MaLR 0 467 2 252 256 133 44 chr3 206529062 206529152 -20995426 + L2 LINE L2 3148 3245 -27 232 188 188 16 chr3 206529872 206529936 -20994642 - MLT1K LTR MaLR -331 257 183 649 146 64 0 chr3 206530589 206530699 -20993879 - L2 LINE L2 -16 3297 3181 184 303 81 30 chr3 206530834 206530933 -20993645 - MIR SINE MIR -33 229 126 347 373 40 0 chr3 206531234 206531384 -20993194 + L2 LINE L2 3114 3269 -3 784 247 51 38 chr3 206532401 206532636 -20991942 + MIR SINE MIR 13 250 -12 184 257 29 29 chr3 206533221 206533291 -20991287 + MIR SINE MIR 180 249 -13 875 87 0 8 chr3 206533568 206533695 -20990883 + AluY SINE Alu 134 259 -52 654 100 0 0 chr3 206533695 206533785 -20990793 + AluY SINE Alu 186 275 -36 234 0 0 0 chr3 206533786 206533812 -20990766 + (GAAAA)n Simple_repeat Simple_repeat 3 28 0 597 248 47 51 chr3 206533871 206534125 -20990453 + LTR33A LTR ERVL 262 514 -9 232 373 113 0 chr3 206534303 206534445 -20990133 + L2 LINE L2 3115 3272 0 186 374 121 0 chr3 206535496 206535595 -20988983 + L2 LINE L2 3162 3272 0 23 0 0 0 chr3 206535738 206535761 -20988817 + AT_rich Low_complexity Low_complexity 1 23 0 206 179 18 0 chr3 206536079 206536135 -20988443 + (TG)n Simple_repeat Simple_repeat 2 58 0 263 350 0 21 chr3 206536410 206536507 -20988071 - L2 LINE L2 -559 2755 2661 204 281 0 31 chr3 206538069 206538133 -20986445 + MIR SINE MIR 201 262 0 231 179 0 21 chr3 206538135 206538182 -20986396 - MIR SINE MIR -61 147 106 410 336 55 47 chr3 206538696 206538949 -20985629 + MIR SINE MIR 8 262 0 36 0 0 0 chr3 206540185 206540221 -20984357 + AT_rich Low_complexity Low_complexity 1 36 0 224 216 148 23 chr3 206541430 206541518 -20983060 - MIR3 SINE MIR -23 185 87 1532 198 0 8 chr3 206541630 206541893 -20982685 + MLT1A1 LTR MaLR 1 261 -104 833 158 0 0 chr3 206541893 206542020 -20982558 - AluSg/x SINE Alu -39 271 145 605 143 29 0 chr3 206542031 206542136 -20982442 + MLT1A1 LTR MaLR 258 365 0 28 29 0 0 chr3 206542199 206542234 -20982344 + AT_rich Low_complexity Low_complexity 1 35 0 383 272 118 99 chr3 206543207 206543585 -20980993 + MLT1K LTR MaLR 147 535 -53 225 0 0 0 chr3 206543585 206543610 -20980968 + (TTG)n Simple_repeat Simple_repeat 2 26 0 383 272 118 99 chr3 206543610 206543665 -20980913 + MLT1K LTR MaLR 535 588 0 1179 229 74 15 chr3 206544052 206544389 -20980189 + L1MC2 LINE L1 5530 5886 -1922 343 127 28 14 chr3 206544504 206544575 -20980003 + AluSp/q SINE Alu 232 303 0 2453 100 0 0 chr3 206544806 206545117 -20979461 - AluY SINE Alu 0 311 1 410 274 33 72 chr3 206545493 206545606 -20978972 + MIR SINE MIR 19 126 -136 1966 188 20 15 chr3 206545606 206546000 -20978578 - MSTD LTR MaLR 0 396 1 410 274 33 72 chr3 206546000 206546039 -20978539 + MIR SINE MIR 126 165 -97 1792 165 3 10 chr3 206547402 206547699 -20976879 + AluJb SINE Alu 1 295 -17 214 274 12 24 chr3 206548208 206548292 -20976286 + MIR SINE MIR 123 205 -57 2125 131 3 3 chr3 206548387 206548692 -20975886 - AluSx SINE Alu -7 305 1 4006 22 0 0 chr3 206548922 206549657 -20974921 - L1P1 LINE L1 -438 5717 4983 4210 83 8 163 chr3 206549768 206550635 -20973943 - L1PB1 LINE L1 0 6151 5419 413 55 18 0 chr3 206550626 206550681 -20973897 + L1MC2 LINE L1 6048 6103 -241 * 285 28 28 0 chr3 206550685 206550721 -20973857 + L1MC2 LINE L1 6067 6103 -241 463 96 27 0 chr3 206550725 206550798 -20973780 + L1MC2 LINE L1 6067 6141 -203 * 5133 189 30 18 chr3 206550797 206551617 -20972961 - L1MC1 LINE L1 -107 6506 5698 1636 148 4 0 chr3 206551617 206551893 -20972685 + L1PB3 LINE L1 5887 6163 0 5133 189 30 18 chr3 206551893 206552925 -20971653 - L1MC1 LINE L1 -915 5698 4617 1953 141 49 0 chr3 206552925 206553251 -20971327 + MER2 DNA MER2_type 2 343 -1 2300 237 39 8 chr3 206553933 206555719 -20968859 - L1MC1 LINE L1 -1809 4617 2608 929 212 5 16 chr3 206555719 206555903 -20968675 - AluJo SINE Alu -130 182 1 2223 169 39 80 chr3 206555906 206556645 -20967933 - L1MC1 LINE L1 -3947 2479 1895 2703 174 21 6 chr3 206556766 206557284 -20967294 - L1MC1 LINE L1 -5309 1117 592 283 96 0 0 chr3 206557296 206557339 -20967239 - L1MEc LINE L1 -4801 2309 2116 189 0 0 0 chr3 206557353 206557374 -20967204 + (TTTTA)n Simple_repeat Simple_repeat 1 21 0 2432 114 11 0 chr3 206557374 206557724 -20966854 - L1PA10 LINE L1 -21 6147 5794 378 215 34 87 chr3 206558020 206558169 -20966409 - L1MEc LINE L1 -6593 266 126 282 330 0 0 chr3 206558222 206558325 -20966253 + L1ME3A LINE L1 5644 5746 -416 599 149 36 15 chr3 206558348 206558490 -20966088 + L1ME3A LINE L1 5822 5959 -219 337 262 78 73 chr3 206558536 206558654 -20965924 + L1ME3A LINE L1 5965 6087 -83 2422 57 0 0 chr3 206558654 206558979 -20965599 - AluY SINE Alu 0 325 1 337 262 78 73 chr3 206558979 206559050 -20965528 + L1ME3A LINE L1 6087 6156 -14 375 298 36 12 chr3 206559054 206559222 -20965356 + L1MC4a LINE L1 5740 5911 -1897 32 0 0 0 chr3 206559369 206559401 -20965177 + AT_rich Low_complexity Low_complexity 1 32 0 283 295 143 0 chr3 206560850 206560955 -20963623 - L2 LINE L2 -182 3090 2971 182 37 37 0 chr3 206561263 206561290 -20963288 + (TTTTG)n Simple_repeat Simple_repeat 1 28 0 496 301 61 38 chr3 206561398 206561611 -20962967 + MLT1K LTR MaLR 303 520 -68 722 244 113 0 chr3 206562903 206563071 -20961507 + MER5A DNA MER1_type 3 189 0 2508 76 3 0 chr3 206663854 206664155 -20860423 + AluSq SINE Alu 1 302 -11 1905 155 17 0 chr3 206664229 206664520 -20860058 + AluSx SINE Alu 1 296 -16 1693 171 42 3 chr3 206664525 206664812 -20859766 + AluJb SINE Alu 2 299 -13 1129 78 18 12 chr3 206664884 206665051 -20859527 - AluY SINE Alu -6 305 138 363 282 0 0 chr3 206665180 206665304 -20859274 - AluSg SINE Alu -173 127 4 3577 149 43 7 chr3 206665304 206665784 -20858794 + L1MC1 LINE L1 5696 6204 -129 2181 112 23 0 chr3 206665784 206666089 -20858489 + AluSx SINE Alu 1 312 0 3577 149 43 7 chr3 206666089 206666211 -20858367 + L1MC1 LINE L1 6204 6320 -13 2285 89 0 0 chr3 206666215 206666528 -20858050 - AluSg SINE Alu 0 313 1 28 0 0 0 chr3 206666528 206666556 -20858022 + AT_rich Low_complexity Low_complexity 1 28 0 292 331 14 35 chr3 206668025 206668170 -20856408 + MIR SINE MIR 20 161 -101 2157 108 3 11 chr3 206668176 206668486 -20856092 + AluSq SINE Alu 1 308 0 615 263 6 19 chr3 206668544 206668704 -20855874 - MIR SINE MIR -31 231 74 976 185 23 79 chr3 206668704 206668808 -20855770 - AluJo SINE Alu -96 216 129 2391 79 3 0 chr3 206668808 206669100 -20855478 + AluY SINE Alu 1 293 -18 976 185 23 79 chr3 206669100 206669211 -20855367 - AluJo SINE Alu -183 129 13 991 111 7 0 chr3 206669598 206669733 -20854845 + AluJb SINE Alu 1 136 -176 2144 123 10 0 chr3 206670114 206670415 -20854163 + AluSq SINE Alu 1 304 -9 212 367 0 11 chr3 206671502 206671592 -20852986 + MIR SINE MIR 16 104 -104 1635 161 30 33 chr3 206671773 206672072 -20852506 + AluJo SINE Alu 1 298 -14 606 108 8 2 chr3 206672093 206672356 -20852222 + AluSx SINE Alu 1 313 0 2328 100 7 0 chr3 206672537 206672847 -20851731 + AluSp SINE Alu 1 312 -1 1181 59 33 0 chr3 206672862 206673014 -20851564 + AluSp SINE Alu 1 157 -156 1081 83 0 0 chr3 206673186 206673319 -20851259 + AluSp SINE Alu 166 298 -15 2474 88 0 0 chr3 206673730 206674037 -20850541 + AluY SINE Alu 1 307 -4 981 191 0 0 chr3 206674037 206674194 -20850384 + AluJb SINE Alu 134 290 -22 556 195 0 0 chr3 206674238 206674325 -20850253 + AluJ/FLAM SINE Alu 5 91 -221 680 158 24 0 chr3 206674343 206674470 -20850108 + L1MDa LINE L1 2010 2139 -4401 902 133 62 44 chr3 206674488 206674714 -20849864 + L1MDa LINE L1 2358 2587 -3953 706 188 0 0 chr3 206674715 206674832 -20849746 + FLAM_C SINE Alu 2 118 -25 2043 227 22 4 chr3 206674873 206675379 -20849199 + L1MDa LINE L1 2572 3086 -3454 2108 137 10 3 chr3 206675400 206675706 -20848872 - AluSc SINE Alu -1 308 1 609 137 36 0 chr3 206675718 206675886 -20848692 + (TA)n Simple_repeat Simple_repeat 1 174 0 740 169 0 59 chr3 206675886 206676022 -20848556 - FLAM_C SINE Alu -14 129 2 2161 203 12 47 chr3 206676023 206676625 -20847953 + L1MDa LINE L1 3070 3650 -2890 1031 173 0 51 chr3 206676625 206676822 -20847756 + AluJo SINE Alu 87 273 -39 886 221 48 171 chr3 206676824 206677250 -20847328 + L1MDa LINE L1 3668 4145 -2395 2385 101 3 0 chr3 206677250 206677556 -20847022 - AluSp SINE Alu -6 307 1 886 221 48 171 chr3 206677556 206677687 -20846891 + L1MDa LINE L1 4145 4291 -2249 2208 112 7 0 chr3 206677687 206677983 -20846595 + AluSx SINE Alu 1 298 -14 886 221 48 171 chr3 206677983 206678088 -20846490 + L1MDa LINE L1 4291 4407 -2133 1409 226 0 16 chr3 206678088 206678393 -20846185 + AluJo SINE Alu 3 302 -10 886 221 48 171 chr3 206678393 206678518 -20846060 + L1MDa LINE L1 4407 4340 -2200 2108 93 4 8 chr3 206678518 206678786 -20845792 + AluSx SINE Alu 1 267 -45 886 221 48 171 chr3 206678786 206678823 -20845755 + L1MDa LINE L1 4339 4379 -2161 2351 92 0 10 chr3 206678971 206679285 -20845293 + AluY SINE Alu 1 311 0 2263 99 7 0 chr3 206679602 206679896 -20844682 + AluSx SINE Alu 3 298 -14 1988 106 50 0 chr3 206679959 206680241 -20844337 + AluSx SINE Alu 1 296 -16 2336 91 0 3 chr3 206680674 206680970 -20843608 + AluSx SINE Alu 1 295 -17 361 245 193 26 chr3 206681643 206681876 -20842702 + MER5C DNA MER1_type 1 272 -52 816 204 6 29 chr3 206681877 206682070 -20842508 - FRAM SINE Alu 0 176 1 1515 178 20 48 chr3 206682094 206682387 -20842191 + AluJo SINE Alu 1 285 -27 309 26 0 0 chr3 206682387 206682425 -20842153 + (CAT)n Simple_repeat Simple_repeat 2 39 0 940 108 114 0 chr3 206682425 206682490 -20842088 + L1MA4 LINE L1 6112 6168 -132 999 33 0 0 chr3 206682490 206682610 -20841968 + 5S rRNA rRNA 1 120 -1 2429 69 10 0 chr3 206682610 206682913 -20841665 + AluY SINE Alu 1 306 -5 940 108 114 0 chr3 206682913 206683012 -20841566 + L1MA4 LINE L1 6167 6296 -4 219 114 0 0 chr3 206683207 206683242 -20841336 + (CCCTAA)n Simple_repeat Simple_repeat 6 40 0 2375 92 0 10 chr3 206683276 206683581 -20840997 - AluSg SINE Alu -7 303 2 259 277 94 75 chr3 206683581 206683936 -20840642 + L2 LINE L2 2688 3059 -213 862 81 0 0 chr3 206684020 206684131 -20840447 - AluSg1 SINE Alu -198 111 1 211 194 0 0 chr3 206684153 206684189 -20840389 + (TTCA)n Simple_repeat Simple_repeat 3 38 0 650 311 51 42 chr3 206684228 206684932 -20839646 - L2 LINE L2 -71 3242 2462 1647 144 68 0 chr3 206684958 206685296 -20839282 + AluJo SINE Alu 1 356 0 2312 92 10 0 chr3 206685419 206685723 -20838855 + AluSq SINE Alu 1 307 -6 206 139 0 0 chr3 206685738 206685774 -20838804 - L2 LINE L2 -981 2333 2298 261 0 0 0 chr3 206685982 206686011 -20838567 + (T)n Simple_repeat Simple_repeat 1 29 0 322 288 59 8 chr3 206686094 206686212 -20838366 + MIR SINE MIR 17 140 -122 1997 109 3 34 chr3 206686226 206686519 -20838059 + AluSg SINE Alu 1 284 -26 2362 144 42 5 chr3 206686524 206686926 -20837652 + L1MB5 LINE L1 5547 5963 -211 353 277 134 0 chr3 206686933 206687052 -20837526 - MIR SINE MIR -16 246 112 960 49 0 0 chr3 206687128 206687250 -20837328 + (TTC)n Simple_repeat Simple_repeat 2 123 0 2089 111 11 0 chr3 206687254 206687533 -20837045 - AluSx SINE Alu -30 282 1 441 141 0 0 chr3 206687534 206687598 -20836980 + AluJ/FRAM SINE Alu 216 279 -33 180 77 0 0 chr3 206687610 206687636 -20836942 + (GGGGA)n Simple_repeat Simple_repeat 2 27 0 22 70 0 0 chr3 206688189 206688232 -20836346 + AT_rich Low_complexity Low_complexity 1 43 0 564 270 121 11 chr3 206688449 206688623 -20835955 - MIR SINE MIR -55 207 15 273 309 63 0 chr3 206688636 206688762 -20835816 + MIR SINE MIR 47 180 -82 2228 125 0 0 chr3 206689356 206689667 -20834911 - AluSq SINE Alu -2 311 1 256 321 69 44 chr3 206689696 206689855 -20834723 + MIR SINE MIR 30 192 -70 283 301 23 85 chr3 206689867 206689927 -20834651 - MIR SINE MIR 0 262 200 2429 81 3 0 chr3 206689927 206690235 -20834343 - AluSp SINE Alu -4 309 1 283 301 23 85 chr3 206690235 206690350 -20834228 - MIR SINE MIR -62 200 98 509 259 7 35 chr3 206690845 206690988 -20833590 + MIR SINE MIR 49 187 -75 2043 121 10 10 chr3 206690990 206691287 -20833291 + AluSx SINE Alu 1 297 -15 602 194 58 0 chr3 206691338 206691441 -20833137 - AluJ SINE Alu -21 291 183 872 152 0 0 chr3 206691452 206691577 -20833001 - AluJ SINE Alu -187 125 1 1991 178 0 0 chr3 206691763 206692066 -20832512 - 7SLRNA srpRNA srpRNA -7 313 11 343 343 30 60 chr3 206692072 206692340 -20832238 - L2 LINE L2 -8 3264 3005 1984 145 3 3 chr3 206692659 206692956 -20831622 + AluSx SINE Alu 1 297 -15 2030 115 4 0 chr3 206692958 206693228 -20831350 + AluSx SINE Alu 1 271 -41 505 99 8 41 chr3 206693228 206693349 -20831229 + (TAAA)n Simple_repeat Simple_repeat 4 120 0 2304 94 0 0 chr3 206693401 206693687 -20830891 + AluSg SINE Alu 1 286 -24 29 0 0 0 chr3 206693687 206693716 -20830862 + AT_rich Low_complexity Low_complexity 1 29 0 2311 98 0 3 chr3 206693729 206694024 -20830554 + AluSx SINE Alu 5 298 -14 2510 56 0 7 chr3 206694025 206694330 -20830248 + AluY SINE Alu 2 304 -7 270 277 0 0 chr3 206694331 206694396 -20830182 + L1MC5 LINE L1 7169 7233 -728 22 0 0 0 chr3 206694538 206694560 -20830018 + AT_rich Low_complexity Low_complexity 1 22 0 247 220 137 71 chr3 206694609 206694648 -20829930 + L1MC4 LINE L1 7273 7308 -734 2463 55 3 16 chr3 206694648 206694955 -20829623 + AluSp SINE Alu 1 303 -10 247 220 137 71 chr3 206694955 206695211 -20829367 + L1MC4 LINE L1 7308 7689 -353 2068 111 37 0 chr3 206695431 206695728 -20828850 + AluSq SINE Alu 1 308 -5 862 336 104 44 chr3 206695794 206696055 -20828523 - L2 LINE L2 -259 3054 2810 2272 110 0 0 chr3 206696055 206696356 -20828222 - AluSx SINE Alu -11 301 1 862 336 104 44 chr3 206696356 206696717 -20827861 - L2 LINE L2 -503 2810 2367 2091 104 0 0 chr3 206696717 206696986 -20827592 + AluSg SINE Alu 40 308 -2 862 336 104 44 chr3 206696986 206697219 -20827359 - L2 LINE L2 -946 2367 2149 630 157 176 0 chr3 206697250 206697352 -20827226 + FAM SINE Alu 2 121 -64 482 342 13 13 chr3 206697379 206697607 -20826971 - L2 LINE L2 -1148 2166 1939 249 149 0 0 chr3 206697607 206697645 -20826933 + L1MB8 LINE L1 5638 5678 -500 1534 138 46 0 chr3 206697645 206697885 -20826693 + AluJb SINE Alu 1 251 -61 419 129 14 0 chr3 206697905 206697975 -20826603 + L1MB8 LINE L1 5652 5722 -456 1669 190 24 12 chr3 206697996 206698328 -20826250 + L1MB8 LINE L1 5837 6172 -6 1802 141 41 28 chr3 206698349 206698639 -20825939 + AluSx SINE Alu 1 294 -18 1806 161 0 28 chr3 206699028 206699345 -20825233 - AluJb SINE Alu 0 309 1 23 0 0 0 chr3 206699357 206699380 -20825198 + AT_rich Low_complexity Low_complexity 1 23 0 547 316 91 0 chr3 206699494 206699703 -20824875 - MIR SINE MIR -6 256 29 413 338 8 8 chr3 206699772 206699905 -20824673 - L2 LINE L2 -1 3271 3139 713 226 0 0 chr3 206699928 206700061 -20824517 + FLAM_C SINE Alu 1 133 0 2182 113 0 7 chr3 206700400 206700733 -20823845 - AluSx SINE Alu 0 312 1 405 210 145 0 chr3 206700782 206700906 -20823672 + MIR SINE MIR 94 235 -27 611 268 22 52 chr3 206701441 206701565 -20823013 + L1ME4a LINE L1 5585 5701 -420 1970 131 3 3 chr3 206701565 206701874 -20822704 - AluSp SINE Alu 0 309 1 611 268 22 52 chr3 206701874 206701979 -20822599 + L1ME4a LINE L1 5701 5808 -313 227 206 157 10 chr3 206701999 206702081 -20822497 + L1ME4a LINE L1 5940 6041 -80 2317 100 3 0 chr3 206702081 206702381 -20822197 - AluSp SINE Alu -12 301 1 227 206 157 10 chr3 206702381 206702400 -20822178 + L1ME4a LINE L1 6041 6056 -65 25 0 0 0 chr3 206702869 206702894 -20821684 + AT_rich Low_complexity Low_complexity 1 25 0 600 256 152 17 chr3 206703295 206703525 -20821053 - MIR SINE MIR 0 262 2 3462 90 35 8 chr3 206703616 206703802 -20820776 - L1PA14 LINE L1 -4 6157 5978 1705 131 4 0 chr3 206703802 206704047 -20820531 - AluSx SINE Alu -18 294 49 3462 90 35 8 chr3 206704047 206704340 -20820238 - L1PA14 LINE L1 -183 5978 5665 1619 123 186 0 chr3 206704340 206704593 -20819985 - AluSx SINE Alu -12 300 1 2304 171 7 2 chr3 206704593 206705014 -20819564 - L1P LINE L1 -3370 2776 2354 2033 131 16 0 chr3 206705014 206705319 -20819259 - AluSx SINE Alu -2 310 1 227 208 142 67 chr3 206705320 206705440 -20819138 - L1ME LINE L1 -223 5898 5770 1288 179 0 13 chr3 206705441 206705665 -20818913 + AluJb SINE Alu 83 303 -9 1850 137 4 7 chr3 206705750 206706021 -20818557 + AluSx SINE Alu 22 291 -21 913 185 95 26 chr3 206706342 206706531 -20818047 - MER3 DNA MER1_type -4 205 4 1956 114 0 54 chr3 206706727 206707046 -20817532 + AluSg SINE Alu 1 303 0 245 282 128 0 chr3 206707137 206707215 -20817363 - L2 LINE L2 -189 3083 2996 379 185 0 0 chr3 206708490 206708555 -20816023 + AluSc SINE Alu 153 217 -82 508 152 65 0 chr3 206708555 206708647 -20815931 - AluJb SINE Alu -191 121 24 1921 161 7 7 chr3 206708795 206709100 -20815478 + AluSx SINE Alu 1 305 -7 1726 166 3 28 chr3 206709262 206709546 -20815032 - AluJo SINE Alu -30 282 6 2286 107 0 13 chr3 206709606 206709915 -20814663 + AluSq SINE Alu 1 305 -8 1725 158 19 16 chr3 206710067 206710377 -20814201 - AluJo SINE Alu -1 311 1 2160 111 0 13 chr3 206711569 206711876 -20812702 - AluSq SINE Alu -10 303 1 389 298 113 91 chr3 206711950 206712323 -20812255 - L2 LINE L2 0 3272 2892 2342 113 0 0 chr3 206712888 206713198 -20811380 - AluSg SINE Alu 0 310 1 316 164 14 14 chr3 206714363 206714436 -20810142 + CT-rich Low_complexity Low_complexity 2 74 0 512 190 21 106 chr3 206714840 206714882 -20809696 - MER5B DNA MER1_type -3 175 131 2387 64 3 3 chr3 206714882 206715180 -20809398 - AluY SINE Alu -13 298 1 512 190 21 106 chr3 206715180 206715279 -20809299 - MER5B DNA MER1_type -47 131 46 1383 195 0 57 chr3 206715367 206715497 -20809081 + AluJo SINE Alu 1 137 -175 2173 57 4 0 chr3 206715497 206715761 -20808817 - AluY SINE Alu -6 305 41 1383 195 0 57 chr3 206715761 206715928 -20808650 + AluJo SINE Alu 137 281 -31 198 0 0 0 chr3 206715933 206715955 -20808623 + (CAA)n Simple_repeat Simple_repeat 2 23 0 2046 135 0 0 chr3 206716065 206716361 -20808217 - AluSp SINE Alu -13 300 5 781 235 122 5 chr3 206716544 206716765 -20807813 - Charlie8 DNA MER1_type -2170 247 1 232 331 24 93 chr3 206716765 206717013 -20807565 + L2 LINE L2 2956 3186 -86 2186 117 3 0 chr3 206717096 206717396 -20807182 + AluSp SINE Alu 1 301 -12 1998 118 0 4 chr3 206717426 206717527 -20807051 + AluSq SINE Alu 32 132 -181 2484 81 0 3 chr3 206717527 206717836 -20806742 + AluSq SINE Alu 1 308 -5 1998 118 0 4 chr3 206717836 206718004 -20806574 + AluSq SINE Alu 132 300 -13 978 121 12 30 chr3 206718171 206718336 -20806242 + AluSc SINE Alu 135 296 -13 296 181 229 12 chr3 206718363 206718446 -20806132 - MIR SINE MIR -147 115 15 246 125 0 107 chr3 206718472 206718528 -20806050 + MIR SINE MIR 138 187 -75 245 256 182 8 chr3 206718606 206718727 -20805851 - MIR SINE MIR -114 148 7 461 236 221 19 chr3 206718866 206719074 -20805504 - MIR SINE MIR 0 262 13 2118 106 30 20 chr3 206719588 206719891 -20804687 + AluSq SINE Alu 1 306 -7 207 308 26 26 chr3 206720078 206720156 -20804422 - MIR SINE MIR -161 101 24 191 349 0 0 chr3 206720178 206720244 -20804334 - MIR SINE MIR -162 100 35 2410 72 10 0 chr3 206721381 206721561 -20803017 - AluY SINE Alu 0 311 125 207 0 0 0 chr3 206721561 206721584 -20802994 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 2410 72 10 0 chr3 206721584 206721710 -20802868 - AluY SINE Alu -186 125 2 830 97 0 0 chr3 206721718 206721831 -20802747 - MER30B DNA MER1_type -77 113 1 3580 244 110 38 chr3 206721831 206723350 -20801228 + HAL1 LINE L1 822 2460 -47 2005 106 46 0 chr3 206723350 206723634 -20800944 - AluSg1 SINE Alu -12 297 1 3580 244 110 38 chr3 206723634 206723686 -20800892 + HAL1 LINE L1 2460 2507 0 368 206 176 55 chr3 206723722 206723887 -20800691 + MIR SINE MIR 28 212 -50 32 43 0 0 chr3 206724140 206724186 -20800392 + AT_rich Low_complexity Low_complexity 1 46 0 919 177 77 5 chr3 206724642 206724862 -20799716 - Charlie1 DNA MER1_type -176 2585 2350 2444 79 0 0 chr3 206724941 206725246 -20799332 - AluY SINE Alu -6 305 1 1184 234 47 60 chr3 206725254 206725428 -20799150 + Charlie1 DNA MER1_type 1934 2109 -652 2203 32 0 0 chr3 206725428 206725676 -20798902 - L1PA4 LINE L1 0 6155 5908 1184 234 47 60 chr3 206725676 206725902 -20798676 + Charlie1 DNA MER1_type 2109 2329 -432 808 113 196 0 chr3 206725986 206726119 -20798459 + AluSg/x SINE Alu 140 298 -14 244 67 0 0 chr3 206726420 206726450 -20798128 - U6 snRNA snRNA -77 30 1 826 177 8 0 chr3 206726509 206726639 -20797939 + AluJb SINE Alu 1 131 -181 289 283 55 55 chr3 206727014 206727159 -20797419 - L2 LINE L2 -9 3304 3160 252 0 0 0 chr3 206727325 206727353 -20797225 + (A)n Simple_repeat Simple_repeat 1 28 0 2432 75 0 0 chr3 206727759 206728053 -20796525 - AluY SINE Alu -17 294 1 2279 99 3 16 chr3 206728299 206728613 -20795965 + AluSg SINE Alu 1 310 0 237 308 30 38 chr3 206728693 206728826 -20795752 - L2 LINE L2 -804 2510 2379 415 313 83 0 chr3 206728938 206729155 -20795423 + L1MC/D LINE L1 5547 5781 -2027 2035 133 0 23 chr3 206729216 206729558 -20795020 + AluSx SINE Alu 1 312 0 2142 123 0 3 chr3 206729926 206730228 -20794350 + AluSc SINE Alu 1 301 -8 22 0 0 0 chr3 206731531 206731553 -20793025 + AT_rich Low_complexity Low_complexity 1 22 0 606 315 103 13 chr3 206731557 206731983 -20792595 - LTR33 LTR ERVL 0 521 1 240 290 96 47 chr3 206732034 206732280 -20792298 + L2 LINE L2 2796 3053 -219 2823 13 0 0 chr3 206732418 206732752 -20791826 - AluYa5 SINE Alu 0 334 1 472 301 105 18 chr3 206732776 206733005 -20791573 - MIR SINE MIR 0 262 14 621 251 22 39 chr3 206733479 206733658 -20790920 - MIR SINE MIR 0 262 87 232 272 35 79 chr3 206733885 206733999 -20790579 - MIR SINE MIR -56 206 98 2092 104 11 4 chr3 206734490 206734799 -20789779 - AluSx SINE Alu 0 311 1 497 263 0 23 chr3 206734814 206734947 -20789631 - L1MC5 LINE L1 -100 7861 7732 2239 113 0 19 chr3 206734950 206734983 -20789595 - AluSp SINE Alu 0 313 281 240 59 0 0 chr3 206734983 206735017 -20789561 + (TTTA)n Simple_repeat Simple_repeat 2 35 0 2239 113 0 19 chr3 206735017 206735302 -20789276 - AluSp SINE Alu -32 281 1 1655 169 43 68 chr3 206735325 206735563 -20789015 - L1MA4 LINE L1 -9 6291 6065 1942 137 3 55 chr3 206735563 206735892 -20788686 - AluJo SINE Alu 0 312 1 1655 169 43 68 chr3 206735892 206736050 -20788528 - L1MA4 LINE L1 -235 6065 5905 490 222 24 8 chr3 206736286 206736412 -20788166 + L1ME4a LINE L1 5988 6115 -6 188 135 27 0 chr3 206737513 206737550 -20787028 + GA-rich Low_complexity Low_complexity 3 40 0 217 234 0 0 chr3 206738101 206738148 -20786430 - L2 LINE L2 0 3313 3267 378 293 67 7 chr3 206738159 206738309 -20786269 + MIR SINE MIR 91 249 -13 2324 81 0 0 chr3 206738505 206738820 -20785758 + AluY SINE Alu 1 311 0 258 284 27 14 chr3 206739019 206739093 -20785485 - MIR SINE MIR -167 95 21 206 255 0 0 chr3 206739935 206739982 -20784596 + CT-rich Low_complexity Low_complexity 1 47 0 214 365 36 15 chr3 206740369 206740506 -20784072 - MIR SINE MIR -63 145 5 381 130 8 15 chr3 206740697 206740936 -20783642 + AluJo SINE Alu 1 298 -4 2237 79 0 17 chr3 206740937 206741266 -20783312 + AluSp SINE Alu 1 324 0 494 265 126 0 chr3 206741288 206741439 -20783139 + MIR SINE MIR 84 253 -9 557 243 46 154 chr3 206741662 206741918 -20782660 + L2 LINE L2 2889 3171 -142 1786 170 6 43 chr3 206741918 206742242 -20782336 - AluJo SINE Alu 0 312 1 557 243 46 154 chr3 206742242 206742275 -20782303 + L2 LINE L2 3171 3133 -180 1283 56 0 0 chr3 206742275 206742435 -20782143 - L1MA1 LINE L1 -7 6295 6136 557 243 46 154 chr3 206742435 206742515 -20782063 + L2 LINE L2 3132 3219 -94 686 168 26 0 chr3 206742518 206742631 -20781947 + FLAM_C SINE Alu 1 116 -17 311 280 28 47 chr3 206742669 206742776 -20781802 + L2 LINE L2 3209 3313 0 2324 76 7 0 chr3 206742859 206743149 -20781429 - AluSp SINE Alu -21 292 1 184 311 108 0 chr3 206743301 206743375 -20781203 + L2 LINE L2 2674 2755 -559 1694 144 6 95 chr3 206743469 206743795 -20780783 - AluJb SINE Alu -15 297 1 401 181 0 0 chr3 206743799 206743871 -20780707 - MER94 DNA DNA -60 74 3 191 128 51 26 chr3 206744089 206744128 -20780450 - MER5B DNA MER1_type -17 161 122 1013 223 0 27 chr3 206744134 206744253 -20780325 + AluJo SINE Alu 3 115 -197 216 97 0 0 chr3 206744253 206744284 -20780294 + (TAAA)n Simple_repeat Simple_repeat 2 32 0 1013 223 0 27 chr3 206744284 206744388 -20780190 + AluJo SINE Alu 115 220 -92 230 204 0 0 chr3 206744388 206744437 -20780141 + Alu SINE Alu 85 133 0 1649 168 29 4 chr3 206744458 206744732 -20779846 + AluJb SINE Alu 1 281 -31 188 33 0 33 chr3 206744740 206744770 -20779808 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 241 261 0 29 chr3 206744772 206744841 -20779737 - MER5A DNA MER1_type -55 134 68 235 386 30 0 chr3 206744914 206745015 -20779563 + L2 LINE L2 3129 3232 -40 239 276 13 13 chr3 206745037 206745113 -20779465 - MIR SINE MIR 0 262 187 2421 84 0 0 chr3 206745126 206745425 -20779153 - AluSg SINE Alu -11 299 1 196 267 50 0 chr3 206746217 206746277 -20778301 + MIR SINE MIR 82 144 -64 2349 86 7 3 chr3 206746290 206746594 -20777984 - AluSp SINE Alu -8 305 1 215 283 0 0 chr3 206747740 206747793 -20776785 + CT-rich Low_complexity Low_complexity 1 53 0 234 261 17 0 chr3 206748985 206749056 -20775522 + GA-rich Low_complexity Low_complexity 1 72 0 545 284 40 72 chr3 206749864 206750086 -20774492 + MIR SINE MIR 20 234 -28 617 192 120 0 chr3 206750246 206750413 -20774165 - MER53 DNA DNA 0 189 3 180 111 0 0 chr3 206752214 206752241 -20772337 + (T)n Simple_repeat Simple_repeat 1 27 0 22 0 0 0 chr3 206753874 206753896 -20770682 + AT_rich Low_complexity Low_complexity 1 22 0 2302 88 33 36 chr3 206754165 206754529 -20770049 - L1PA14 LINE L1 0 6161 5799 354 270 0 10 chr3 206754952 206755052 -20769526 + MIR SINE MIR 66 164 -98 328 225 0 54 chr3 206755120 206755231 -20769347 + L1ME LINE L1 5730 5834 -328 2161 97 17 0 chr3 206755338 206755626 -20768952 + AluSp SINE Alu 1 293 -20 366 298 21 0 chr3 206755629 206755723 -20768855 - MIR SINE MIR -7 255 160 1732 142 83 3 chr3 206755727 206756051 -20768527 - MER46B DNA MER2_type -1 235 11 423 224 192 8 chr3 206756060 206756185 -20768393 - MIR SINE MIR -104 158 11 2343 70 0 3 chr3 206756474 206756775 -20767803 - AluY SINE Alu -11 300 1 1655 185 3 42 chr3 206757086 206757399 -20767179 + AluJo SINE Alu 5 305 -7 2280 95 14 0 chr3 206758421 206758717 -20765861 - AluSx SINE Alu -12 300 1 2572 80 0 0 chr3 206759343 206759656 -20764922 - AluSp SINE Alu 0 313 1 310 231 14 27 chr3 206760351 206760498 -20764080 + GA-rich Low_complexity Low_complexity 4 148 0 35 63 0 0 chr3 206760889 206760952 -20763626 + AT_rich Low_complexity Low_complexity 1 63 0 390 179 0 13 chr3 206761635 206761713 -20762865 - MSTB LTR MaLR -303 123 47 2474 66 0 0 chr3 206761715 206762017 -20762561 - AluY SINE Alu -9 302 1 242 329 25 0 chr3 206762147 206762226 -20762352 - MIR SINE MIR -180 82 2 2125 118 26 3 chr3 206762393 206762698 -20761880 + AluSx SINE Alu 1 312 0 385 283 54 63 chr3 206762783 206762988 -20761590 - MIR SINE MIR -6 256 54 356 232 0 16 chr3 206763394 206763477 -20761101 + MIR SINE MIR 8 88 -120 195 277 77 0 chr3 206763607 206763672 -20760906 + MIR SINE MIR 109 178 -84 526 260 68 48 chr3 206763822 206764222 -20760356 - L1ME4a LINE L1 -1 6120 5713 223 315 148 12 chr3 206764251 206764413 -20760165 + MER5A DNA MER1_type 5 188 -1 292 296 45 0 chr3 206764456 206764544 -20760034 + L2 LINE L2 3221 3312 -1 2473 55 0 16 chr3 206764710 206765019 -20759559 - AluY SINE Alu -7 304 1 225 283 11 11 chr3 206765103 206765195 -20759383 + (TA)n Simple_repeat Simple_repeat 2 93 0 198 402 49 0 chr3 206765838 206765920 -20758658 + L2 LINE L2 3141 3226 -46 2042 135 0 17 chr3 206767363 206767685 -20756893 + AluSx SINE Alu 1 317 0 345 236 30 82 chr3 206767685 206767952 -20756626 - L1M4 LINE L1 -2745 3401 3149 1920 84 4 4 chr3 206767970 206768221 -20756357 + AluY SINE Alu 49 299 -12 809 200 53 6 chr3 206769317 206769487 -20755091 + MER45A DNA AcHobo 1 178 0 511 214 107 59 chr3 206769506 206769693 -20754885 + MIR SINE MIR 35 230 -32 2245 98 7 0 chr3 206771214 206771510 -20753068 - AluSp SINE Alu -15 298 1 183 329 26 13 chr3 206771513 206771589 -20752989 + MIR SINE MIR 70 146 -62 2058 75 43 22 chr3 206771880 206772179 -20752399 - AluY SINE Alu 0 305 1 1581 118 30 15 chr3 206772237 206772528 -20752050 - AluSp SINE Alu 0 313 31 587 296 65 10 chr3 206772777 206772976 -20751602 - MIR SINE MIR -21 241 32 227 267 159 31 chr3 206773799 206773950 -20750628 + MIR SINE MIR 3 175 -61 270 172 52 0 chr3 206774503 206774561 -20750017 - L1MC/D LINE L1 -2052 5756 5696 2161 242 67 48 chr3 206774715 206775318 -20749260 - L1ME1 LINE L1 -43 6123 5533 1675 180 0 52 chr3 206775318 206775646 -20748932 - AluJo SINE Alu -1 311 1 207 0 0 0 chr3 206775653 206775676 -20748902 + (TTAA)n Simple_repeat Simple_repeat 4 26 0 2161 242 67 48 chr3 206775676 206775687 -20748891 - L1ME1 LINE L1 -638 5528 5519 2154 118 0 0 chr3 206775687 206775974 -20748604 - AluSx SINE Alu -25 287 1 2161 242 67 48 chr3 206775974 206776171 -20748407 - L1ME1 LINE L1 -647 5519 5287 717 223 26 11 chr3 206776313 206776517 -20748061 - L1ME1 LINE L1 -917 5229 5022 267 157 0 0 chr3 206776979 206777030 -20747548 + (TG)n Simple_repeat Simple_repeat 2 52 0 237 281 0 0 chr3 206777065 206777122 -20747456 - L1MC/D LINE L1 -790 5376 5320 663 258 42 21 chr3 206777167 206777407 -20747171 - MER46C DNA MER2_type 0 338 94 328 234 43 11 chr3 206778955 206779049 -20745529 + L1ME LINE L1 5544 5640 -481 231 289 13 13 chr3 206779243 206779319 -20745259 + MIR3 SINE MIR 133 208 0 200 294 29 0 chr3 206779799 206779867 -20744711 + L3 LINE CR1 1302 1371 -206 199 329 61 0 chr3 206780525 206780607 -20743971 + L2 LINE L2 3186 3272 0 2114 138 0 0 chr3 206781783 206782136 -20742442 - AluSx SINE Alu 0 353 1 181 69 10 98 chr3 206782601 206782703 -20741875 + (TA)n Simple_repeat Simple_repeat 2 94 0 261 0 0 0 chr3 206782722 206782751 -20741827 + (TG)n Simple_repeat Simple_repeat 2 30 0 375 322 43 9 chr3 206782751 206782866 -20741712 + L2 LINE L2 3154 3272 0 392 95 0 16 chr3 206783438 206783501 -20741077 + (GAAAA)n Simple_repeat Simple_repeat 2 63 0 312 263 137 63 chr3 206784082 206784287 -20740291 + L2 LINE L2 2309 2528 -786 643 303 186 20 chr3 206784710 206785264 -20739314 - L2 LINE L2 -957 2357 1712 345 262 58 19 chr3 206785493 206785596 -20738982 + 7SK RNA RNA 13 119 -74 331 221 58 35 chr3 206785640 206785726 -20738852 - L2 LINE L2 -4 3268 3181 444 274 20 20 chr3 206785956 206786109 -20738469 - L1ME LINE L1 -461 5660 5508 296 332 62 33 chr3 206786124 206786184 -20738394 - L2 LINE L2 -1639 1675 1618 2336 128 0 0 chr3 206786184 206786496 -20738082 + AluSx SINE Alu 1 312 0 296 332 62 33 chr3 206786496 206786772 -20737806 - L2 LINE L2 -1696 1618 1329 1147 14 22 0 chr3 206787879 206788017 -20736561 + L1PA2 LINE L1 6015 6155 0 27 0 0 0 chr3 206788030 206788057 -20736521 + AT_rich Low_complexity Low_complexity 1 27 0 605 115 0 0 chr3 206788107 206788203 -20736375 - L1MA1 LINE L1 0 6302 6207 578 44 278 0 chr3 206788309 206788399 -20736179 - L1PA8 LINE L1 -14 6158 6044 197 225 0 0 chr3 206789689 206789729 -20734849 - L2 LINE L2 0 3272 3233 271 264 28 0 chr3 206790403 206790475 -20734103 - MIR SINE MIR -1 261 188 25 31 0 0 chr3 206791434 206791466 -20733112 + AT_rich Low_complexity Low_complexity 1 32 0 2414 78 7 0 chr3 206793468 206793764 -20730814 + AluSp SINE Alu 1 298 -15 652 167 9 0 chr3 206794157 206794265 -20730313 - AluJo/FRAM SINE Alu -20 292 184 2465 61 0 3 chr3 206794266 206794577 -20730001 + AluY SINE Alu 1 310 -1 183 129 0 0 chr3 206794768 206794799 -20729779 + (CAG)n Simple_repeat Simple_repeat 1 31 0 5698 136 32 15 chr3 206794995 206795302 -20729276 - Tigger3b DNA MER2_type -1967 1061 760 1753 141 10 43 chr3 206795302 206795601 -20728977 + AluSx SINE Alu 9 297 -15 5698 136 32 15 chr3 206795601 206796337 -20728241 - Tigger3b DNA MER2_type -2268 760 1 2044 102 29 0 chr3 206796501 206796803 -20727775 - AluSp SINE Alu 0 311 2 978 191 26 39 chr3 206797058 206797380 -20727198 - L1MC5 LINE L1 -1045 6997 6650 228 314 38 13 chr3 206797603 206797762 -20726816 - L1MC4a LINE L1 -1542 6266 6104 1988 130 169 5 chr3 206797907 206798275 -20726303 + MSTA LTR MaLR 1 428 0 749 245 47 73 chr3 206798371 206798754 -20725824 - HAL1 LINE L1 -430 2077 1705 1947 124 3 41 chr3 206799096 206799410 -20725168 - AluSg SINE Alu -6 304 3 22 0 0 0 chr3 206799463 206799485 -20725093 + AT_rich Low_complexity Low_complexity 1 22 0 909 102 114 0 chr3 206799667 206799766 -20724812 - L1MA4 LINE L1 -4 6296 6210 2426 69 7 0 chr3 206799766 206800070 -20724508 - AluY SINE Alu -5 306 1 996 33 0 0 chr3 206800070 206800190 -20724388 - 5S rRNA rRNA -1 120 1 909 102 114 0 chr3 206800190 206800255 -20724323 - L1MA4 LINE L1 -89 6211 6112 309 26 0 0 chr3 206800255 206800293 -20724285 + (ATG)n Simple_repeat Simple_repeat 2 39 0 997 250 17 45 chr3 206800293 206800585 -20723993 - AluJb SINE Alu -17 285 2 2186 89 31 0 chr3 206801000 206801293 -20723285 + AluSx SINE Alu 1 302 -10 4572 151 28 12 chr3 206802878 206803089 -20721489 - L1MA6 LINE L1 -23 6277 6071 298 47 47 0 chr3 206803089 206803132 -20721446 + AluY SINE Alu 251 295 -7 4572 151 28 12 chr3 206803132 206804344 -20720234 - L1MA6 LINE L1 -229 6071 4837 2452 95 3 0 chr3 206804371 206804677 -20719901 + AluSx SINE Alu 1 307 -5 259 288 189 0 chr3 206804755 206804866 -20719712 - L2 LINE L2 0 3313 3182 2349 102 0 0 chr3 206805228 206805532 -20719046 - AluSx SINE Alu -4 308 5 1157 151 0 0 chr3 206805867 206806033 -20718545 - AluSg/x SINE Alu -26 286 121 1373 116 57 13 chr3 206806049 206806305 -20718273 - L1M4 LINE L1 -503 5675 5410 2294 114 0 3 chr3 206806398 206806705 -20717873 - AluSq SINE Alu -7 306 1 221 360 11 11 chr3 206807138 206807227 -20717351 + L3 LINE CR1 223 311 -1266 503 308 80 17 chr3 206807382 206807619 -20716959 + L3 LINE CR1 589 840 -737 537 286 71 0 chr3 206807625 206807793 -20716785 + MIR SINE MIR 81 260 -2 1184 128 35 13 chr3 206808465 206808691 -20715887 + MLT1B LTR MaLR 1 231 -159 1114 187 56 82 chr3 206808691 206809101 -20715477 - MLT1A2 LTR MaLR 0 374 4 638 182 174 0 chr3 206809104 206809236 -20715342 + MLT1B LTR MaLR 227 381 -9 262 233 55 41 chr3 206810513 206810586 -20713992 - MIR SINE MIR -70 192 119 539 197 66 66 chr3 206810740 206810938 -20713640 + LTR16A1 LTR ERVL 259 456 -1 535 269 11 38 chr3 206811082 206811268 -20713310 - MIR SINE MIR -26 236 56 385 268 57 0 chr3 206811526 206811649 -20712929 + MER94 DNA DNA 1 130 -4 2246 112 0 31 chr3 206812010 206812332 -20712246 - AluSx SINE Alu 0 312 1 35 24 0 0 chr3 206812852 206812894 -20711684 + AT_rich Low_complexity Low_complexity 1 42 0 2209 82 0 4 chr3 206813131 206813521 -20711057 - AluSg SINE Alu 0 391 3 580 329 39 22 chr3 206813544 206813775 -20710803 + MIR SINE MIR 5 239 -23 242 160 20 0 chr3 206814040 206814090 -20710488 + CT-rich Low_complexity Low_complexity 1 51 0 253 253 137 0 chr3 206814110 206814205 -20710373 + MIR SINE MIR 123 230 -32 697 192 0 0 chr3 206814236 206814356 -20710222 - FLAM_C SINE Alu -23 120 1 256 155 35 0 chr3 206814473 206814531 -20710047 - L1ME4a LINE L1 -4 6117 6058 355 298 139 26 chr3 206815623 206815774 -20708804 + L2 LINE L2 3103 3270 -2 525 152 0 0 chr3 206817007 206817106 -20707472 + L1PA13 LINE L1 6065 6163 0 391 287 132 60 chr3 206817580 206817814 -20706764 - MIR SINE MIR -1 261 16 240 208 62 31 chr3 206817887 206817983 -20706595 - L1ME LINE L1 -298 5823 5725 21 0 0 0 chr3 206818175 206818196 -20706382 + AT_rich Low_complexity Low_complexity 1 21 0 203 267 0 0 chr3 206819135 206819180 -20705398 + L2 LINE L2 3257 3301 -12 184 398 0 12 chr3 206820153 206820236 -20704342 + MIR3 SINE MIR 74 155 -53 181 296 0 0 chr3 206820467 206820511 -20704067 + L2 LINE L2 3150 3193 -79 659 255 119 14 chr3 206820746 206820963 -20703615 - L1MC4a LINE L1 -302 5819 5627 240 35 0 0 chr3 206820963 206820992 -20703586 + (TG)n Simple_repeat Simple_repeat 1 29 0 659 255 119 14 chr3 206820992 206821142 -20703436 - L1MC4a LINE L1 -494 5627 5494 411 119 0 0 chr3 206821286 206821353 -20703225 + (GA)n Simple_repeat Simple_repeat 2 68 0 250 297 18 72 chr3 206821786 206821856 -20702722 - MER5B DNA MER1_type -73 105 42 288 0 0 0 chr3 206821856 206821888 -20702690 + (CA)n Simple_repeat Simple_repeat 2 33 0 250 297 18 72 chr3 206821888 206821928 -20702650 - MER5B DNA MER1_type -136 42 1 1711 234 3 3 chr3 206822249 206822612 -20701966 - MLT1A1 LTR MaLR -2 363 1 376 248 24 24 chr3 206822612 206822737 -20701841 - MER94 DNA DNA -4 130 6 1126 299 119 12 chr3 206823854 206824308 -20700270 - L2 LINE L2 -1 3312 2772 1571 180 54 17 chr3 206824308 206824602 -20699976 + AluJo SINE Alu 1 305 -7 1126 299 119 12 chr3 206824602 206824747 -20699831 - L2 LINE L2 -541 2772 2644 353 203 13 0 chr3 206824753 206824832 -20699746 + MLT1A1 LTR MaLR 1 80 -285 6776 74 10 0 chr3 206824833 206825814 -20698764 + L1PA8 LINE L1 5230 6219 0 1126 181 43 76 chr3 206825814 206826118 -20698460 + MLT1A1 LTR MaLR 72 365 0 1936 247 51 15 chr3 206826120 206826666 -20697912 - L2 LINE L2 -639 2675 2110 252 238 29 9 chr3 206827165 206827270 -20697308 + (TA)n Simple_repeat Simple_repeat 1 107 0 591 281 27 7 chr3 206828537 206828715 -20695863 + MIR SINE MIR 6 186 -65 329 257 94 91 chr3 206829217 206829556 -20695022 - L1ME3 LINE L1 -211 5934 5595 849 278 83 15 chr3 206829557 206829884 -20694694 - L2 LINE L2 -5 3308 2960 1003 287 66 28 chr3 206829888 206830951 -20693627 - L1ME3 LINE L1 -554 5593 4488 1535 298 84 36 chr3 206831046 206831989 -20692589 - L1ME3 LINE L1 -1826 4303 3407 2478 50 20 0 chr3 206831989 206832290 -20692288 - AluY SINE Alu -4 307 1 1535 298 84 36 chr3 206832290 206832445 -20692133 - L1ME3 LINE L1 -2722 3407 3261 2485 108 16 3 chr3 206832445 206832832 -20691746 - L1MA3 LINE L1 0 6305 5914 1535 298 84 36 chr3 206832832 206833798 -20690780 - L1ME3 LINE L1 -2868 3261 2139 745 296 113 55 chr3 206834337 206834581 -20689997 - L1ME3 LINE L1 -4746 1564 1336 1772 157 0 62 chr3 206834581 206834905 -20689673 - AluJo SINE Alu -8 304 1 745 296 113 55 chr3 206834905 206836039 -20688539 - L1ME3 LINE L1 -4974 1336 67 2382 95 7 0 chr3 206836483 206836789 -20687789 - AluSp SINE Alu -5 308 1 1054 254 166 29 chr3 206836815 206837334 -20687244 + Charlie7 DNA MER1_type 99 688 -1924 857 188 50 12 chr3 206838585 206838745 -20685833 + FRAM SINE Alu 1 166 0 195 261 22 0 chr3 206839077 206839123 -20685455 + L2 LINE L2 3219 3265 -7 251 235 29 0 chr3 206839395 206839463 -20685115 + CT-rich Low_complexity Low_complexity 2 71 0 25 31 0 0 chr3 206841149 206841181 -20683397 + AT_rich Low_complexity Low_complexity 1 32 0 2315 210 71 65 chr3 206841529 206842401 -20682177 + L1MC5 LINE L1 7034 7910 -51 242 247 151 43 chr3 206842479 206842572 -20682006 + MER63 DNA MER1_type 5 733 -103 348 24 0 0 chr3 206843022 206843063 -20681515 + (TG)n Simple_repeat Simple_repeat 2 42 0 1773 161 3 14 chr3 206843063 206843350 -20681228 - AluJb SINE Alu -28 284 1 1075 261 142 61 chr3 206843451 206844056 -20680522 + Tigger8 DNA MER2_type 4 657 -9 965 237 14 0 chr3 206844098 206844317 -20680261 + LTR33 LTR ERVL 287 508 -13 1590 70 0 0 chr3 206844484 206844684 -20679894 - AluY SINE Alu -6 305 106 257 298 48 90 chr3 206845583 206845829 -20678749 + MIR SINE MIR 6 235 -27 357 136 0 0 chr3 206845958 206846024 -20678554 + (TC)n Simple_repeat Simple_repeat 1 66 0 673 138 28 0 chr3 206846736 206846845 -20677733 + MLT1B LTR MaLR 1 112 -278 8827 142 30 14 chr3 206846846 206849342 -20675236 + L1MA4 LINE L1 3760 6300 0 543 133 0 0 chr3 206849359 206849442 -20675136 + MLT1B LTR MaLR 97 179 -211 * 1055 197 62 0 chr3 206849439 206849632 -20674946 + MER21B LTR ERV1 288 492 -371 976 192 10 20 chr3 206849735 206849933 -20674645 + MLT1B LTR MaLR 195 390 0 712 243 3 7 chr3 206849936 206850114 -20674464 + MLT1B-int LTR MaLR 3 182 -1214 548 159 0 0 chr3 206850088 206850176 -20674402 + MLT1B-int LTR MaLR 293 380 -991 * 2108 117 10 7 chr3 206850176 206850483 -20674095 + AluSx SINE Alu 1 308 -4 507 186 0 26 chr3 206850523 206850636 -20673942 + MLT1B-int LTR MaLR 369 478 -893 1370 193 39 23 chr3 206850691 206850996 -20673582 + MLT1A1 LTR MaLR 53 362 -3 1736 139 0 28 chr3 206851555 206851842 -20672736 + AluSx SINE Alu 34 312 0 437 306 46 0 chr3 206854585 206854693 -20669885 + L2 LINE L2 3160 3272 0 224 225 0 0 chr3 206854775 206854815 -20669763 + (TATG)n Simple_repeat Simple_repeat 3 42 0 219 225 54 9 chr3 206856293 206856404 -20668174 + (TA)n Simple_repeat Simple_repeat 1 116 0 221 196 18 0 chr3 206857485 206857541 -20667037 + CT-rich Low_complexity Low_complexity 4 60 0 444 251 153 60 chr3 206858635 206858870 -20665708 + MIR SINE MIR 6 262 0 490 310 159 4 chr3 206860227 206860453 -20664125 - MIR SINE MIR 0 262 2 526 305 106 31 chr3 206861817 206862109 -20662469 + L2 LINE L2 2985 3298 -15 2415 216 48 2 chr3 206862284 206862762 -20661816 + MLT1F LTR MaLR 42 541 -1 391 133 0 0 chr3 206863502 206863562 -20661016 + AluJ/FRAM SINE Alu 232 291 -11 395 298 71 0 chr3 206864086 206864227 -20660351 + MIR SINE MIR 56 206 -56 381 134 15 0 chr3 206864247 206864314 -20660264 - L1MA2 LINE L1 -4 6300 6233 241 297 70 8 chr3 206864448 206864576 -20660002 - L2 LINE L2 -152 3161 3026 286 321 0 12 chr3 206864617 206864701 -20659877 - L2 LINE L2 0 3313 3231 1688 160 11 7 chr3 206864703 206865020 -20659558 + AluJo SINE Alu 1 318 0 2261 198 67 41 chr3 206865021 206865587 -20658991 + L1MC3 LINE L1 6241 6821 -964 855 107 0 8 chr3 206865609 206865731 -20658847 - AluJ SINE Alu 0 312 192 983 122 0 14 chr3 206865736 206865875 -20658703 - AluJ SINE Alu -175 137 1 3562 196 65 26 chr3 206865876 206866783 -20657795 + L1MC3 LINE L1 6819 7760 -25 218 313 89 69 chr3 206866806 206867110 -20657468 - L2 LINE L2 -69 3244 2935 520 320 90 15 chr3 206867219 206867419 -20657159 + MIR SINE MIR 46 260 -2 204 324 102 19 chr3 206867966 206868074 -20656504 - MIR3 SINE MIR -5 203 87 183 293 26 86 chr3 206869331 206869447 -20655131 - MIR SINE MIR -108 154 46 2019 124 63 30 chr3 206870341 206870704 -20653874 - THE1C LTR MaLR 0 375 1 270 224 0 15 chr3 206871537 206871604 -20652974 - MIR SINE MIR -17 245 180 2041 145 10 10 chr3 206871731 206872042 -20652536 - AluSx SINE Alu -1 311 1 6034 87 14 22 chr3 206872191 206873502 -20651076 + L1PB1 LINE L1 4844 6151 0 1728 154 57 7 chr3 206875027 206875307 -20649271 + AluJb SINE Alu 1 294 -18 353 285 179 7 chr3 206875490 206875641 -20648937 - MIR SINE MIR -21 241 65 9640 91 2 0 chr3 206876364 206878493 -20646085 + L1PA7 LINE L1 4025 6151 -3 306 259 61 61 chr3 206879009 206879140 -20645438 - MIR SINE MIR -46 216 86 6257 141 63 22 chr3 206879658 206880841 -20643737 + Tigger3b DNA MER2_type 1 1231 0 417 198 22 0 chr3 206881400 206881491 -20643087 + L1MD3 LINE L1 7898 7990 -5 374 235 24 12 chr3 206881516 206881601 -20642977 + MLT1D LTR MaLR 1 86 -419 944 235 76 67 chr3 206881817 206882174 -20642404 - MSTD LTR MaLR 0 396 6 1078 227 29 10 chr3 206882204 206882491 -20642087 + MLT1D LTR MaLR 205 558 -9 230 169 34 17 chr3 206882526 206882585 -20641993 + L1M LINE L1 5354 5413 -767 27 62 0 0 chr3 206882804 206882852 -20641726 + AT_rich Low_complexity Low_complexity 1 48 0 2064 126 7 20 chr3 206883093 206883394 -20641184 + AluSx SINE Alu 1 297 -15 2293 116 9 3 chr3 206884064 206884399 -20640179 + THE1A LTR MaLR 19 355 0 221 282 32 58 chr3 206884471 206884627 -20639951 - L2 LINE L2 -1482 1832 1681 208 359 0 43 chr3 206884750 206884842 -20639736 + MIR SINE MIR 59 146 -116 2070 112 3 40 chr3 206886247 206886550 -20638028 + AluSg SINE Alu 1 292 -18 376 197 14 0 chr3 206886578 206886649 -20637929 + AluS SINE Alu 228 299 -3 2131 274 99 39 chr3 206886807 206887901 -20636677 - L2 LINE L2 -33 3280 2121 182 268 0 0 chr3 206888155 206888196 -20636382 - MER5A DNA MER1_type -148 41 1 1971 85 0 0 chr3 206888389 206888635 -20635943 + AluY SINE Alu 37 282 -29 622 126 0 0 chr3 206888548 206888636 -20635942 + AluY SINE Alu 196 313 0 250 33 0 0 chr3 206888636 206888666 -20635912 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 23 33 0 0 chr3 206889432 206889462 -20635116 + AT_rich Low_complexity Low_complexity 1 30 0 181 388 69 50 chr3 206889622 206889782 -20634796 - L2 LINE L2 -130 3142 2980 183 271 0 86 chr3 206891195 206891265 -20633313 + L2 LINE L2 3208 3271 -1 468 273 104 65 chr3 206891380 206891873 -20632705 + L2 LINE L2 2532 3055 -217 240 256 86 34 chr3 206892762 206892879 -20631699 + MLT1L LTR MaLR 363 485 -130 322 272 43 0 chr3 206894186 206894278 -20630300 - MIR SINE MIR -79 183 88 261 326 10 10 chr3 206895800 206895898 -20628680 - MIR3 SINE MIR -44 164 67 405 331 89 0 chr3 206896650 206896807 -20627771 - MIR SINE MIR -87 175 5 1715 146 3 75 chr3 206898720 206899041 -20625537 + AluJb SINE Alu 1 298 -14 2536 57 0 0 chr3 206899211 206899509 -20625069 + AluY SINE Alu 1 298 -13 203 254 85 0 chr3 206899627 206899686 -20624892 - MIR SINE MIR -16 246 183 415 236 256 25 chr3 206899705 206899908 -20624670 + MIR SINE MIR 13 262 0 220 269 60 15 chr3 206899901 206899968 -20624610 - MIR SINE MIR -74 188 119 * 218 103 0 0 chr3 206900000 206900029 -20624549 + MER5A DNA MER1_type 48 76 -113 1215 128 6 11 chr3 206900039 206900218 -20624360 - AluJb SINE Alu -6 306 129 287 271 85 17 chr3 206900221 206900339 -20624239 + MER5A DNA MER1_type 61 186 -3 23 0 0 0 chr3 206900701 206900724 -20623854 + AT_rich Low_complexity Low_complexity 1 23 0 1398 206 7 7 chr3 206901766 206902042 -20622536 + AluJb SINE Alu 1 276 -36 1026 116 6 17 chr3 206902049 206902230 -20622348 + (GAAA)n Simple_repeat Simple_repeat 2 180 0 2683 256 64 5 chr3 206904197 206904822 -20619756 + MER69 DNA AcHobo 1 662 -1864 199 288 96 0 chr3 206904877 206904950 -20619628 + MIR SINE MIR 105 184 -78 419 294 131 31 chr3 206904959 206905119 -20619459 - MIR SINE MIR -49 213 38 315 49 0 0 chr3 206905315 206905356 -20619222 + (TC)n Simple_repeat Simple_repeat 2 42 0 180 111 0 0 chr3 206905540 206905567 -20619011 + (TAAAA)n Simple_repeat Simple_repeat 5 31 0 232 226 75 0 chr3 206905860 206905913 -20618665 - L2 LINE L2 0 3313 3257 369 287 89 30 chr3 206906025 206906177 -20618401 - L1ME LINE L1 -298 5823 5681 423 0 0 0 chr3 206906177 206906224 -20618354 + (TA)n Simple_repeat Simple_repeat 1 47 0 369 287 89 30 chr3 206906224 206906493 -20618085 - L1ME LINE L1 -440 5681 5376 376 293 129 52 chr3 206906644 206906876 -20617702 + MIR SINE MIR 10 259 -3 1761 143 0 60 chr3 206906903 206907217 -20617361 + AluSx SINE Alu 2 296 -16 2181 119 7 0 chr3 206907219 206907521 -20617057 + AluSx SINE Alu 1 304 -8 1337 181 9 4 chr3 206907674 206907906 -20616672 + L1MB7 LINE L1 5936 6168 -16 22 0 0 0 chr3 206908671 206908693 -20615885 + AT_rich Low_complexity Low_complexity 1 22 0 221 75 25 0 chr3 206909837 206909877 -20614701 + (CAAAAA)n Simple_repeat Simple_repeat 2 42 0 323 269 156 38 chr3 206909885 206910045 -20614533 + MIR SINE MIR 44 222 -40 552 309 11 28 chr3 206911198 206911379 -20613199 + MIR3 SINE MIR 23 200 -8 486 358 12 6 chr3 206912106 206912279 -20612299 + MIR3 SINE MIR 30 203 -5 181 242 50 61 chr3 206912528 206912627 -20611951 + L2 LINE L2 2662 2759 -555 1477 283 52 46 chr3 206912635 206913226 -20611352 + MLT1L LTR MaLR 3 597 -18 417 317 132 30 chr3 206913336 206913601 -20610977 + L2 LINE L2 2978 3269 -3 220 237 93 72 chr3 206914763 206914860 -20609718 - L2 LINE L2 -37 3235 3137 229 259 327 0 chr3 206916552 206916662 -20607916 + MIR3 SINE MIR 20 156 -52 360 310 121 35 chr3 206916675 206916849 -20607729 + MIR SINE MIR 47 235 -27 2233 65 0 68 chr3 206917058 206917368 -20607210 - AluY SINE Alu -22 289 1 210 71 0 0 chr3 206917929 206917957 -20606621 + (A)n Simple_repeat Simple_repeat 1 28 0 283 326 8 68 chr3 206917975 206918107 -20606471 - MIR3 SINE MIR -7 201 78 222 257 177 44 chr3 206918108 206918221 -20606357 + MIR3 SINE MIR 3 130 -78 194 250 0 18 chr3 206918282 206918338 -20606240 - MIR3 SINE MIR -144 64 10 544 218 105 0 chr3 206918603 206918736 -20605842 + MER69 DNA AcHobo 1 147 -1079 1870 139 4 4 chr3 206918776 206919057 -20605521 + AluSq SINE Alu 1 281 -32 224 167 0 37 chr3 206919137 206919191 -20605387 + CT-rich Low_complexity Low_complexity 5 56 0 2175 64 61 0 chr3 206919227 206919507 -20605071 - AluSp SINE Alu -13 300 4 287 140 0 0 chr3 206919595 206919645 -20604933 - L1MA4A LINE L1 -3 6300 6251 869 179 1 0 chr3 206919645 206919838 -20604740 - AluJb SINE Alu -13 299 129 1702 139 0 0 chr3 206919838 206920082 -20604496 + AluSx SINE Alu 38 281 -31 294 214 49 148 chr3 206920724 206920870 -20603708 + MER5A DNA MER1_type 11 165 -13 550 269 112 35 chr3 206921736 206921913 -20602665 - L1MC4a LINE L1 -1659 6149 5987 1832 179 0 22 chr3 206921913 206922231 -20602347 - AluJo SINE Alu -1 311 1 550 269 112 35 chr3 206922231 206922391 -20602187 - L1MC4a LINE L1 -1821 5987 5786 5294 154 28 8 chr3 206923459 206924307 -20600271 + MER6 DNA MER2_type 1 865 0 1662 152 28 28 chr3 206924482 206924771 -20599807 + AluJo SINE Alu 1 289 -23 204 40 0 0 chr3 206925034 206925059 -20599519 + (TG)n Simple_repeat Simple_repeat 1 25 0 263 252 99 8 chr3 206925283 206925414 -20599164 + L1ME4a LINE L1 5974 6116 -5 2044 125 0 0 chr3 206925450 206925737 -20598841 + AluSx SINE Alu 24 310 -2 624 302 10 36 chr3 206925881 206926073 -20598505 - MIR3 SINE MIR -7 201 15 186 133 0 0 chr3 206926081 206926111 -20598467 + (TTTC)n Simple_repeat Simple_repeat 4 33 0 898 92 0 17 chr3 206926548 206926668 -20597910 + AluSp/q SINE Alu 176 293 -20 2337 81 0 14 chr3 206926781 206927078 -20597500 + AluSg SINE Alu 1 293 -17 2510 71 0 0 chr3 206927080 206927391 -20597187 + AluY SINE Alu 1 311 0 701 230 0 0 chr3 206928104 206928230 -20596348 + FLAM_C SINE Alu 2 127 -6 202 217 43 0 chr3 206928233 206928279 -20596299 + GA-rich Low_complexity Low_complexity 4 51 0 256 190 177 44 chr3 206928287 206928445 -20596133 - L1ME4a LINE L1 -42 6079 5901 2315 110 0 0 chr3 206928448 206928747 -20595831 - AluSg SINE Alu -9 301 3 288 0 0 0 chr3 206928959 206928991 -20595587 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 1922 112 3 42 chr3 206928995 206929281 -20595297 - AluSx SINE Alu -37 275 1 357 256 197 7 chr3 206929309 206929446 -20595132 - MIR SINE MIR -64 198 36 2149 114 3 0 chr3 206929644 206929933 -20594645 + AluSp SINE Alu 1 290 -23 1210 211 32 48 chr3 206930240 206930305 -20594273 + L1ME3A LINE L1 5765 5830 -340 1758 171 4 0 chr3 206930305 206930586 -20593992 - AluJb SINE Alu -30 282 1 1210 211 32 48 chr3 206930586 206930894 -20593684 + L1ME3A LINE L1 5830 6157 -13 800 226 28 91 chr3 206931150 206931275 -20593303 - L1M4 LINE L1 -2629 3517 3386 2208 102 0 0 chr3 206931275 206931604 -20592974 + AluSx SINE Alu 1 329 0 800 226 28 91 chr3 206931604 206931871 -20592707 - L1M4 LINE L1 -2760 3386 3149 1922 84 4 4 chr3 206931889 206932140 -20592438 + AluY SINE Alu 49 299 -12 260 338 44 37 chr3 206932252 206932388 -20592190 - L3 LINE CR1 -1 1576 1440 2215 107 10 0 chr3 206932410 206932718 -20591860 - AluSp SINE Alu -2 311 1 1580 141 6 100 chr3 206932805 206933124 -20591454 + AluJo SINE Alu 1 289 -23 577 263 78 19 chr3 206933169 206933374 -20591204 + MIR SINE MIR 11 227 -35 2066 95 4 0 chr3 206933444 206933717 -20590861 + AluSg SINE Alu 37 310 0 287 123 0 35 chr3 206933959 206934016 -20590562 + Alu SINE Alu 247 301 0 1510 208 0 7 chr3 206934025 206934333 -20590245 + AluJo SINE Alu 2 307 -5 2360 94 0 0 chr3 206934407 206934706 -20589872 - AluSx SINE Alu -13 299 1 24 53 0 0 chr3 206934876 206934914 -20589664 + AT_rich Low_complexity Low_complexity 1 38 0 322 295 31 8 chr3 206934964 206935093 -20589485 - L1ME LINE L1 -341 5780 5649 321 225 41 33 chr3 206935125 206935305 -20589273 - L3 LINE CR1 -593 984 750 2139 103 7 17 chr3 206935807 206936109 -20588469 - AluSq SINE Alu -14 299 1 284 302 35 35 chr3 206936126 206936242 -20588336 - L2 LINE L2 -9 3263 3148 256 258 32 0 chr3 206936480 206936542 -20588036 + L2 LINE L2 3193 3256 -16 2185 105 0 7 chr3 206936743 206937037 -20587541 + AluSg SINE Alu 2 293 -17 807 174 0 28 chr3 206937901 206938045 -20586533 - FLAM_C SINE Alu -2 141 2 1140 189 83 53 chr3 206938047 206938240 -20586338 + L1MC4 LINE L1 7695 7904 -138 1916 112 54 0 chr3 206938240 206938517 -20586061 - AluSp SINE Alu -21 292 1 1140 189 83 53 chr3 206938517 206938661 -20585917 + L1MC4 LINE L1 7904 8042 0 512 312 77 8 chr3 206938929 206939163 -20585415 + MIR SINE MIR 12 261 -1 288 299 39 125 chr3 206939218 206939707 -20584871 - L2 LINE L2 0 3272 2826 1386 171 78 39 chr3 206939785 206939956 -20584622 + AluJo SINE Alu 1 189 -123 2504 33 3 10 chr3 206939956 206940255 -20584323 - AluY SINE Alu -14 297 1 1386 171 78 39 chr3 206940255 206940364 -20584214 + AluJo SINE Alu 189 292 -20 2436 74 7 0 chr3 206940758 206941054 -20583524 - AluSp SINE Alu -15 298 1 2518 62 0 0 chr3 206941323 206941632 -20582946 + AluY SINE Alu 2 310 -1 208 220 0 0 chr3 206941746 206941796 -20582782 + CT-rich Low_complexity Low_complexity 2 51 0 2309 60 0 3 chr3 206942129 206942445 -20582133 + AluY SINE Alu 1 315 0 230 286 58 36 chr3 206943688 206943724 -20580854 + L1MC/D LINE L1 5566 5600 -557 2284 92 0 29 chr3 206943724 206944038 -20580540 + AluSx SINE Alu 1 305 -7 230 286 58 36 chr3 206944038 206944123 -20580455 + L1MC/D LINE L1 5600 5689 -468 1899 152 3 0 chr3 206944259 206944273 -20580305 - AluSq SINE Alu -10 303 291 234 0 0 0 chr3 206944273 206944299 -20580279 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 1899 152 3 0 chr3 206944299 206944586 -20579992 - AluSq SINE Alu -22 291 1 438 188 0 0 chr3 206944860 206944956 -20579622 + (CATA)n Simple_repeat Simple_repeat 1 96 0 2229 115 7 0 chr3 206944967 206945272 -20579306 + AluSp SINE Alu 1 307 -6 604 329 149 27 chr3 206945304 206945828 -20578750 - L2 LINE L2 -6 3266 2690 354 264 36 36 chr3 206946482 206946592 -20577986 + L2 LINE L2 3173 3282 -31 1072 78 0 0 chr3 206946594 206946723 -20577855 - AluSq/x SINE Alu -182 130 2 429 276 10 0 chr3 206946755 206946853 -20577725 + L2 LINE L2 3174 3272 0 451 194 21 2 chr3 206947040 206947163 -20577415 + L1MA4A LINE L1 6026 6280 0 2051 130 0 32 chr3 206947295 206947610 -20576968 + AluSx SINE Alu 6 310 -2 213 255 284 10 chr3 206947829 206947931 -20576647 - MIR SINE MIR -81 181 52 306 162 20 3 chr3 206948776 206948863 -20575715 - FLAM_A SINE Alu 0 133 14 246 222 263 0 chr3 206948976 206949075 -20575503 - L1ME4a LINE L1 -2 6119 5995 1423 138 92 120 chr3 206949205 206949362 -20575216 + MER44D DNA MER2_type 1 161 -2330 1955 120 25 4 chr3 206949362 206949636 -20574942 - AluSg SINE Alu -30 280 1 1423 138 92 120 chr3 206949636 206949827 -20574751 + MER44D DNA MER2_type 161 609 0 2145 115 0 23 chr3 206949890 206950194 -20574384 - AluY SINE Alu -14 297 1 1608 184 10 10 chr3 206950271 206950570 -20574008 - AluJo SINE Alu -13 299 1 407 62 0 0 chr3 206950603 206950651 -20573927 + Alu SINE Alu 2 49 -264 2293 110 0 3 chr3 206950836 206951136 -20573442 - AluSq SINE Alu -14 299 1 2018 119 7 0 chr3 206951268 206951563 -20573015 + AluSg SINE Alu 1 297 -13 720 185 8 0 chr3 206951643 206951762 -20572816 - AluSq/x SINE Alu -189 124 5 269 238 95 0 chr3 206951779 206951863 -20572715 + L1ME4a LINE L1 6028 6119 -2 472 315 61 18 chr3 206952949 206953114 -20571464 + MIR3 SINE MIR 25 196 -12 384 97 0 0 chr3 206954073 206954135 -20570443 + (CA)n Simple_repeat Simple_repeat 2 63 0 1864 132 59 0 chr3 206954322 206954610 -20569968 - AluSx SINE Alu -7 305 1 1632 168 7 40 chr3 206954775 206955072 -20569506 + AluJb SINE Alu 1 287 -25 348 43 0 0 chr3 206955074 206955120 -20569458 + (TG)n Simple_repeat Simple_repeat 1 46 0 895 161 0 0 chr3 206955319 206955462 -20569116 - AluSq SINE Alu -15 298 156 584 117 0 0 chr3 206955463 206955540 -20569038 - AluSq SINE Alu -234 78 2 230 130 22 0 chr3 206955690 206955736 -20568842 - L1MC4 LINE L1 0 8042 7996 2097 127 10 0 chr3 206956442 206956734 -20567844 + AluSq SINE Alu 1 295 -18 795 193 7 0 chr3 206956856 206956991 -20567587 + FLAM_A SINE Alu 1 136 -6 237 108 0 0 chr3 206957074 206957111 -20567467 + (TG)n Simple_repeat Simple_repeat 2 38 0 373 300 57 31 chr3 206957112 206957267 -20567311 - L1MC4 LINE L1 -122 7920 7756 2284 114 0 6 chr3 206957267 206957582 -20566996 - AluSq SINE Alu 0 313 1 373 300 57 31 chr3 206957582 206957653 -20566925 - L1MC4 LINE L1 -286 7756 7688 1005 244 31 19 chr3 206957681 206957939 -20566639 + MLT1A2 LTR MaLR 113 373 -1 1534 180 3 14 chr3 206957974 206958296 -20566282 + AluJb SINE Alu 3 321 0 646 217 40 0 chr3 206958397 206958549 -20566029 + MIR SINE MIR 84 241 -21 328 253 108 0 chr3 206958558 206958641 -20565937 + L2 LINE L2 3192 3283 -30 843 212 0 24 chr3 206958681 206958851 -20565727 + FAM SINE Alu 1 46 -3 1241 186 0 45 chr3 206958851 206959093 -20565485 + AluJb SINE Alu 82 312 0 259 263 95 63 chr3 206959617 206959712 -20564866 + MER5A DNA MER1_type 7 104 -85 28 0 0 0 chr3 206959778 206959806 -20564772 + AT_rich Low_complexity Low_complexity 1 28 0 2333 89 3 0 chr3 206959806 206960099 -20564479 + AluSg SINE Alu 1 294 -16 251 171 0 0 chr3 206960106 206960147 -20564431 - L1MC/D LINE L1 -631 5702 5662 1418 192 48 14 chr3 206960154 206960446 -20564132 - AluJo SINE Alu -10 302 1 2518 66 0 7 chr3 206960458 206960760 -20563818 - AluY SINE Alu -11 300 1 2442 135 28 32 chr3 206960775 206961178 -20563400 - L1MC/D LINE L1 -663 5670 5282 2092 136 10 3 chr3 206961178 206961488 -20563090 - AluSq SINE Alu -1 312 1 2442 135 28 32 chr3 206961488 206961585 -20562993 - L1MC/D LINE L1 -1051 5282 5186 495 345 12 18 chr3 206961823 206961991 -20562587 + MIR3 SINE MIR 20 186 -22 318 285 77 23 chr3 206964417 206964547 -20560031 - MIR SINE MIR -67 195 59 2303 107 0 7 chr3 206964635 206964945 -20559633 + AluSx SINE Alu 1 308 -4 1301 107 0 0 chr3 206964950 206965118 -20559460 + AluSg/x SINE Alu 133 300 -10 351 241 143 9 chr3 206965295 206965407 -20559171 + MIR SINE MIR 48 174 -88 181 195 13 130 chr3 206966281 206966358 -20558220 + MIR SINE MIR 86 153 -55 1485 154 128 0 chr3 206966408 206966674 -20557904 - AluJb SINE Alu -12 300 1 453 319 91 38 chr3 206966698 206966871 -20557707 + L2 LINE L2 1163 1325 -1989 1058 179 72 0 chr3 206966871 206967066 -20557512 - MER3 DNA MER1_type 0 209 1 453 319 91 38 chr3 206967066 206967292 -20557286 + L2 LINE L2 1325 1667 -1647 435 192 71 20 chr3 206967309 206967408 -20557170 + L1MDa LINE L1 3 106 -6434 228 125 47 0 chr3 206967408 206967472 -20557106 + (TA)n Simple_repeat Simple_repeat 1 67 0 261 0 0 0 chr3 206967513 206967542 -20557036 + (CA)n Simple_repeat Simple_repeat 2 30 0 4739 226 96 46 chr3 206967557 206967606 -20556972 + L1MDa LINE L1 122 167 -6373 2391 93 0 0 chr3 206967606 206967916 -20556662 + AluY SINE Alu 2 311 0 4739 226 96 46 chr3 206967916 206968882 -20555696 + L1MDa LINE L1 167 1236 -5304 2088 117 4 0 chr3 206968882 206969191 -20555387 + AluSx SINE Alu 1 310 0 4739 226 96 46 chr3 206969191 206969625 -20554953 + L1MDa LINE L1 1236 1647 -4893 1306 192 0 0 chr3 206969628 206969836 -20554742 - AluJb SINE Alu -91 221 14 599 234 31 14 chr3 206969841 206970028 -20554550 + L1MDa LINE L1 1581 1891 -4649 509 211 73 8 chr3 206970083 206970206 -20554372 + L1MDa LINE L1 1857 1987 -4553 820 154 0 0 chr3 206970224 206970341 -20554237 + FLAM_C SINE Alu 11 127 -16 234 193 0 0 chr3 206970342 206970399 -20554179 + (CATATA)n Simple_repeat Simple_repeat 2 58 0 1291 221 15 0 chr3 206970399 206970671 -20553907 - AluSx SINE Alu -25 287 12 2145 115 0 23 chr3 206971274 206971578 -20553000 - AluY SINE Alu -14 297 1 922 183 6 24 chr3 206971655 206971824 -20552754 - FRAM SINE Alu -18 158 1 1889 118 28 24 chr3 206971830 206972118 -20552460 - AluSq SINE Alu -24 289 1 291 353 49 0 chr3 206972955 206973088 -20551490 + MIR3 SINE MIR 45 187 -21 180 206 382 15 chr3 206973116 206973252 -20551326 - MER5A DNA MER1_type -3 186 1 2104 125 0 20 chr3 206973469 206973772 -20550806 + AluSx SINE Alu 1 297 -15 2381 149 22 0 chr3 206973793 206974155 -20550423 + L1MC1 LINE L1 5955 6324 -9 813 147 0 0 chr3 206974158 206974267 -20550311 + AluJo/FLAM SINE Alu 3 111 -201 1089 128 67 46 chr3 206974268 206974524 -20550054 - AluSq SINE Alu 0 344 85 889 192 64 0 chr3 206974563 206974719 -20549859 + FRAM SINE Alu 1 166 0 862 121 27 7 chr3 206974740 206974889 -20549689 + L1MA8 LINE L1 6139 6290 -1 454 272 0 16 chr3 206975376 206975501 -20549077 + L2 LINE L2 3182 3304 -9 2233 96 0 38 chr3 206975576 206975890 -20548688 + AluSp SINE Alu 1 302 -11 4845 76 8 8 chr3 206976139 206976774 -20547804 + SVA Other Other 746 1380 -6 24 0 0 0 chr3 206976774 206976798 -20547780 + AT_rich Low_complexity Low_complexity 1 24 0 2535 107 3 0 chr3 206976798 206977144 -20547434 + L1PA13 LINE L1 5815 6161 -2 453 312 161 32 chr3 206977178 206977497 -20547081 - L2 LINE L2 -817 2497 2098 480 304 22 16 chr3 206977497 206977681 -20546897 - MER5A DNA MER1_type -1 188 4 453 312 161 32 chr3 206977681 206977826 -20546752 - L2 LINE L2 -1216 2098 1973 1143 218 59 68 chr3 206977942 206978282 -20546296 - MER46C DNA MER2_type 0 338 2 242 342 13 34 chr3 206978836 206978985 -20545593 + Tigger3(Golem) DNA MER2_type 941 1086 -1943 2526 56 0 0 chr3 206978986 206979288 -20545290 - AluY SINE Alu -9 302 1 252 250 188 0 chr3 206979862 206980006 -20544572 + L1ME4a LINE L1 5946 6116 -5 926 126 0 0 chr3 206981079 206981214 -20543364 - AluSg/x SINE Alu -2 307 173 2250 90 0 0 chr3 206981953 206982263 -20542315 - AluSg SINE Alu 0 310 1 784 167 0 0 chr3 206982586 206982700 -20541878 - FRAM SINE Alu -25 151 38 309 299 86 8 chr3 206982932 206983049 -20541529 - MIR SINE MIR -107 155 30 262 298 11 32 chr3 206983171 206983265 -20541313 + MIR SINE MIR 44 135 -73 225 94 0 0 chr3 206983282 206983314 -20541264 + (TC)n Simple_repeat Simple_repeat 2 33 0 729 172 20 80 chr3 206983314 206983343 -20541235 - FLAM_C SINE Alu -169 143 114 2061 119 34 0 chr3 206983343 206983636 -20540942 - AluSg SINE Alu -7 303 1 802 45 18 0 chr3 206983639 206983750 -20540828 + (TTTC)n Simple_repeat Simple_repeat 3 115 0 729 172 20 80 chr3 206983750 206983867 -20540711 - FLAM_C SINE Alu -200 112 2 186 327 115 0 chr3 206983884 206983997 -20540581 + MIR SINE MIR 137 262 0 244 277 19 19 chr3 206984070 206984168 -20540410 + CT-rich Low_complexity Low_complexity 4 155 0 238 234 106 11 chr3 206984186 206984280 -20540298 - L1MC5 LINE L1 -37 7924 7822 242 239 0 0 chr3 206985566 206985612 -20538966 + L2 LINE L2 3219 3264 -8 506 309 118 5 chr3 206987093 206987297 -20537281 + MIR SINE MIR 33 259 -3 848 218 71 0 chr3 206987386 206987556 -20537022 + AluJo SINE Alu 122 303 -9 2373 109 0 0 chr3 206987625 206987927 -20536651 - AluSx SINE Alu -10 302 1 282 242 68 76 chr3 206988016 206988148 -20536430 + MIR SINE MIR 90 220 -42 535 254 157 5 chr3 206988691 206988888 -20535690 + L1ME LINE L1 5526 5752 -369 348 261 17 128 chr3 206989213 206989393 -20535185 - MIR SINE MIR -75 187 28 2269 63 11 3 chr3 206990169 206990456 -20534122 + AluSp SINE Alu 3 291 -22 2348 87 3 0 chr3 206990844 206991143 -20533435 + AluSp SINE Alu 1 300 -13 319 326 113 0 chr3 206991334 206991475 -20533103 + MIR SINE MIR 93 249 -13 1514 103 0 0 chr3 206991489 206991684 -20532894 + AluSg/x SINE Alu 78 272 -40 2261 105 10 0 chr3 206992169 206992474 -20532104 + AluSp SINE Alu 1 308 -5 481 64 26 13 chr3 206992478 206992556 -20532022 + (GGAA)n Simple_repeat Simple_repeat 2 80 0 501 285 73 64 chr3 206992742 206993072 -20531506 - L1ME4a LINE L1 -3 6118 5786 931 187 0 7 chr3 206993073 206993228 -20531350 - AluSg/x SINE Alu -16 296 143 422 320 0 0 chr3 206994009 206994112 -20530466 - L3 LINE CR1 -78 1499 1397 437 289 164 25 chr3 206994220 206994421 -20530157 - L3 LINE CR1 -701 876 648 2238 120 35 13 chr3 206994623 206994998 -20529580 - MLT1B LTR MaLR 0 390 8 2141 137 7 0 chr3 206995131 206995438 -20529140 - AluSx SINE Alu -3 309 1 2066 123 10 10 chr3 206995931 206996224 -20528354 + AluSx SINE Alu 2 294 -18 491 319 92 17 chr3 206996435 206996673 -20527905 + MIR SINE MIR 7 262 0 261 271 198 7 chr3 206996690 206996828 -20527750 - MIR SINE MIR -75 187 18 191 295 38 57 chr3 206997377 206997482 -20527096 - L2 LINE L2 -64 3249 3147 524 358 71 23 chr3 206997515 206997825 -20526753 - L2 LINE L2 -412 2902 2578 5146 150 2 26 chr3 206997847 206999137 -20525441 + L1PA14 LINE L1 4252 5571 -590 2074 101 3 52 chr3 206999137 206999483 -20525095 + AluSp SINE Alu 1 313 0 5146 150 2 26 chr3 206999483 206999785 -20524793 + L1PA14 LINE L1 5571 5769 -392 2132 82 61 0 chr3 206999785 207000078 -20524500 + AluY SINE Alu 1 311 0 5146 150 2 26 chr3 207000078 207000136 -20524442 + L1PA14 LINE L1 5769 5827 -334 298 0 0 45 chr3 207000136 207000180 -20524398 + (TCTCCC)n Simple_repeat Simple_repeat 1 42 0 2843 63 3 0 chr3 207000181 207000544 -20524034 + SVA Other Other 52 415 -971 1906 107 8 0 chr3 207000794 207001046 -20523532 - AluSx SINE Alu -22 290 37 2504 129 35 38 chr3 207001487 207001539 -20523039 + MSTB LTR MaLR 1 52 -374 2203 67 0 0 chr3 207001539 207001807 -20522771 + AluY SINE Alu 35 302 -9 2504 129 35 38 chr3 207001807 207002180 -20522398 + MSTB LTR MaLR 52 425 -1 260 289 59 29 chr3 207002201 207002405 -20522173 + L1MC4a LINE L1 5715 5924 -1884 333 0 0 0 chr3 207002772 207002809 -20521769 + (TG)n Simple_repeat Simple_repeat 2 38 0 310 266 48 131 chr3 207006369 207006480 -20518098 + L1MC4a LINE L1 5717 5801 -2007 2248 119 3 3 chr3 207006480 207006790 -20517788 + AluSx SINE Alu 1 310 -2 310 266 48 131 chr3 207006790 207006907 -20517671 + L1MC4a LINE L1 5801 5926 -1882 191 259 12 0 chr3 207007684 207007769 -20516809 + (TA)n Simple_repeat Simple_repeat 1 86 0 363 341 31 0 chr3 207008425 207008554 -20516024 - MIR3 SINE MIR -46 162 30 490 212 30 0 chr3 207008690 207008789 -20515789 + MLT1G1 LTR MaLR 3 104 -491 712 186 0 0 chr3 207008794 207008907 -20515671 + AluJo/FLAM SINE Alu 6 118 -194 2288 51 0 44 chr3 207008908 207009240 -20515338 - AluY SINE Alu 0 319 1 247 274 67 30 chr3 207009277 207009412 -20515166 + L1P5 LINE L1 5321 5460 -694 319 306 144 20 chr3 207009473 207009820 -20514758 + L1MC4a LINE L1 5506 5895 -1913 2446 99 3 0 chr3 207009883 207010195 -20514383 + AluSq SINE Alu 1 313 0 535 113 0 12 chr3 207010394 207010474 -20514104 + AluS SINE Alu 1 79 -234 232 259 327 0 chr3 207011063 207011173 -20513405 + MIR3 SINE MIR 20 156 -52 365 310 121 35 chr3 207011186 207011360 -20513218 + MIR SINE MIR 47 235 -27 808 163 0 15 chr3 207012433 207012568 -20512010 - FLAM_A SINE Alu 0 133 1 188 289 144 33 chr3 207012973 207013063 -20511515 - MER5B DNA MER1_type -75 103 4 340 227 187 65 chr3 207013312 207013466 -20511112 + MIR SINE MIR 12 186 -22 278 370 56 36 chr3 207014133 207014384 -20510194 + L2 LINE L2 3007 3262 -10 194 0 39 0 chr3 207015575 207015601 -20508977 + (CA)n Simple_repeat Simple_repeat 1 27 0 369 341 29 7 chr3 207016927 207017065 -20507513 - MIR SINE MIR -110 152 12 2692 23 3 0 chr3 207017361 207017665 -20506913 + AluY SINE Alu 1 305 -6 1240 165 9 9 chr3 207017748 207017978 -20506600 + MER46A DNA MER2_type 1 230 -6 808 289 57 29 chr3 207017999 207018417 -20506161 - L1MC4a LINE L1 -1834 5974 5545 639 236 37 19 chr3 207018432 207018648 -20505930 - L1MC4a LINE L1 -2319 5489 5270 759 204 46 46 chr3 207019055 207019208 -20505370 - MIR SINE MIR -8 254 99 1337 189 98 19 chr3 207019208 207019526 -20505052 - MER2 DNA MER2_type 0 344 2 759 204 46 46 chr3 207019526 207019588 -20504990 - MIR SINE MIR -162 100 39 333 0 0 0 chr3 207019670 207019707 -20504871 + (CA)n Simple_repeat Simple_repeat 1 37 0 2051 155 26 2 chr3 207019964 207020389 -20504189 - L1PBa LINE L1 -4819 2044 1610 967 156 39 5 chr3 207020386 207020591 -20503987 - L1PB1 LINE L1 -788 5358 5147 * 712 31 0 0 chr3 207020604 207020702 -20503876 + L1PB1 LINE L1 5342 5439 -712 3665 113 0 14 chr3 207020731 207021150 -20503428 + L1PB1 LINE L1 5592 6002 -149 2212 131 17 8 chr3 207021150 207021502 -20503076 + THE1A LTR MaLR 1 355 0 3665 113 0 14 chr3 207021502 207021647 -20502931 + L1PB1 LINE L1 6002 6148 -3 260 386 77 14 chr3 207021862 207022069 -20502509 - L2 LINE L2 -407 2907 2688 414 134 0 0 chr3 207022415 207022482 -20502096 + (TC)n Simple_repeat Simple_repeat 2 68 0 659 255 119 14 chr3 207022626 207022776 -20501802 + L1MC4a LINE L1 5494 5627 -494 240 35 0 0 chr3 207022776 207022805 -20501773 + (CA)n Simple_repeat Simple_repeat 1 29 0 659 255 119 14 chr3 207022805 207023022 -20501556 + L1MC4a LINE L1 5627 5819 -302 181 296 0 0 chr3 207023257 207023301 -20501277 - L2 LINE L2 -79 3193 3150 184 398 0 12 chr3 207023532 207023615 -20500963 - MIR3 SINE MIR -53 155 74 203 267 0 0 chr3 207024588 207024633 -20499945 - L2 LINE L2 -12 3301 3257 21 0 0 0 chr3 207025572 207025593 -20498985 + AT_rich Low_complexity Low_complexity 1 21 0 240 208 62 31 chr3 207025785 207025881 -20498697 + L1ME LINE L1 5725 5823 -298 391 287 132 60 chr3 207025954 207026188 -20498390 + MIR SINE MIR 16 261 -1 525 152 0 0 chr3 207026662 207026761 -20497817 - L1PA13 LINE L1 0 6163 6065 355 298 139 26 chr3 207027994 207028145 -20496433 - L2 LINE L2 -2 3270 3103 256 155 35 0 chr3 207029237 207029295 -20495283 + L1ME4a LINE L1 6058 6117 -4 697 192 0 0 chr3 207029412 207029532 -20495046 + FLAM_C SINE Alu 1 120 -23 253 253 137 0 chr3 207029563 207029658 -20494920 - MIR SINE MIR -32 230 123 242 160 20 0 chr3 207029678 207029728 -20494850 + GA-rich Low_complexity Low_complexity 1 51 0 580 329 39 22 chr3 207029993 207030224 -20494354 - MIR SINE MIR -23 239 5 2210 82 0 4 chr3 207030247 207030645 -20493933 + AluSg SINE Alu 3 399 0 35 24 0 0 chr3 207030882 207030924 -20493654 + AT_rich Low_complexity Low_complexity 1 42 0 2246 112 0 31 chr3 207031444 207031766 -20492812 + AluSx SINE Alu 1 312 0 385 268 57 0 chr3 207032127 207032250 -20492328 - MER94 DNA DNA -4 130 1 535 269 11 38 chr3 207032508 207032694 -20491884 + MIR SINE MIR 56 236 -26 330 365 0 0 chr3 207032967 207033137 -20491441 + C-rich Low_complexity Low_complexity 1 170 0 2296 104 3 0 chr3 207033211 207033510 -20491068 - AluSg SINE Alu -10 300 1 465 19 0 0 chr3 207033513 207033567 -20491011 + (TA)n Simple_repeat Simple_repeat 2 55 0 23 0 0 0 chr3 207033567 207033590 -20490988 + AT_rich Low_complexity Low_complexity 1 23 0 441 229 64 9 chr3 207033847 207033956 -20490622 + MER91C DNA MER1_type 4 118 -22 13961 132 39 15 chr3 207034055 207036416 -20488162 - Tigger1 DNA MER2_type 0 2418 2 183 139 0 0 chr3 207037128 207037164 -20487414 + (TGG)n Simple_repeat Simple_repeat 3 38 0 669 292 51 14 chr3 207037560 207037776 -20486802 - MIR SINE MIR -13 249 26 923 200 57 52 chr3 207037884 207038094 -20486484 - MIR SINE MIR -10 252 42 188 35 35 0 chr3 207039474 207039503 -20485075 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 484 312 173 23 chr3 207039778 207040044 -20484534 + L2 LINE L2 3005 3310 -3 491 31 15 0 chr3 207040131 207040196 -20484382 + (TG)n Simple_repeat Simple_repeat 2 67 0 467 233 0 0 chr3 207040582 207040685 -20483893 + MLT1I LTR MaLR 305 407 -2 246 325 67 33 chr3 207040859 207040979 -20483599 + L2 LINE L2 3149 3272 0 265 257 29 57 chr3 207041318 207041423 -20483155 - MIR SINE MIR -56 206 105 307 359 73 22 chr3 207042545 207042818 -20481760 + L3 LINE CR1 62 348 -1229 270 0 0 0 chr3 207042828 207042858 -20481720 + (CA)n Simple_repeat Simple_repeat 2 31 0 1083 165 62 78 chr3 207042879 207043200 -20481378 + MLT1D LTR MaLR 8 323 -182 737 178 65 47 chr3 207043198 207043367 -20481211 + MLT2B2 LTR ERVL 290 461 -54 * 1249 232 90 16 chr3 207043365 207043848 -20480730 - MLT1E LTR MaLR -29 564 3 228 357 48 0 chr3 207044320 207044404 -20480174 - L3 LINE CR1 -1223 354 267 * 497 312 23 12 chr3 207044395 207044568 -20480010 + L2 LINE L2 2804 2978 -335 184 229 221 41 chr3 207044597 207044608 -20479970 + L2 LINE L2 3082 3090 -223 701 217 139 0 chr3 207044608 207044774 -20479804 - MER5A DNA MER1_type 0 189 1 184 229 221 41 chr3 207044774 207044884 -20479694 + L2 LINE L2 3090 3225 -88 21 36 0 0 chr3 207045606 207045634 -20478944 + AT_rich Low_complexity Low_complexity 1 28 0 423 286 106 42 chr3 207045985 207046163 -20478415 - MIR3 SINE MIR -1 207 12 1507 202 62 21 chr3 207046320 207046693 -20477885 + MLT1B LTR MaLR 1 465 -2 475 341 56 0 chr3 207047761 207047940 -20476638 + MIR SINE MIR 1 189 -73 381 22 0 0 chr3 207049705 207049751 -20474827 + (CA)n Simple_repeat Simple_repeat 1 46 0 211 343 36 43 chr3 207050027 207050167 -20474411 + L2 LINE L2 2721 2859 -455 275 248 9 0 chr3 207050673 207050778 -20473800 + (TG)n Simple_repeat Simple_repeat 2 107 0 759 189 0 6 chr3 207050798 207051163 -20473415 + (TG)n Simple_repeat Simple_repeat 1 362 0 2439 100 3 0 chr3 207052146 207052457 -20472121 + AluSp SINE Alu 2 313 0 398 277 90 32 chr3 207052925 207053080 -20471498 + MIR SINE MIR 1 164 -98 219 279 76 0 chr3 207053779 207053858 -20470720 + MIR SINE MIR 175 259 -3 245 329 14 14 chr3 207056775 207056845 -20467733 - MIR SINE MIR -119 89 20 546 272 163 15 chr3 207057397 207057599 -20466979 - MIR SINE MIR 0 262 31 387 337 74 66 chr3 207058281 207058539 -20466039 + L2 LINE L2 2921 3180 -92 539 327 12 55 chr3 207058546 207058803 -20465775 + MIR SINE MIR 3 248 -14 262 237 66 13 chr3 207059215 207059291 -20465287 + L2 LINE L2 3229 3308 -5 195 171 49 0 chr3 207059650 207059691 -20464887 - L2 LINE L2 -28 3244 3202 352 324 92 16 chr3 207060067 207060252 -20464326 + MIR SINE MIR 22 220 -42 193 265 61 0 chr3 207060660 207060709 -20463869 - L2 LINE L2 -5 3267 3216 1751 166 7 0 chr3 207061647 207061918 -20462660 + AluJb SINE Alu 11 283 -29 366 42 0 0 chr3 207061918 207061966 -20462612 + (CAAAC)n Simple_repeat Simple_repeat 2 49 0 544 130 10 0 chr3 207061995 207062095 -20462483 - L1PA13 LINE L1 0 6163 6063 33 43 0 0 chr3 207062110 207062157 -20462421 + AT_rich Low_complexity Low_complexity 1 47 0 228 298 69 46 chr3 207062228 207062359 -20462219 + L2 LINE L2 3006 3139 -133 410 295 204 0 chr3 207062671 207062855 -20461723 + MIR SINE MIR 19 228 -21 21 36 0 0 chr3 207062901 207062929 -20461649 + AT_rich Low_complexity Low_complexity 1 28 0 207 294 174 9 chr3 207064220 207064329 -20460249 + MIR SINE MIR 123 249 -13 528 305 90 13 chr3 207065274 207065507 -20459071 - MIR SINE MIR 0 262 10 23 0 0 0 chr3 207065745 207065768 -20458810 + AT_rich Low_complexity Low_complexity 1 23 0 2537 79 19 26 chr3 207065768 207066146 -20458432 - L1PB1 LINE L1 -1 6150 5776 25 0 0 0 chr3 207066167 207066192 -20458386 + AT_rich Low_complexity Low_complexity 1 25 0 597 275 32 39 chr3 207066339 207066663 -20457915 - MLT1J LTR MaLR -159 287 1 390 256 111 8 chr3 207067041 207067158 -20457420 - MIR3 SINE MIR -9 199 71 214 218 92 58 chr3 207068472 207068559 -20456019 + MIR SINE MIR 146 235 -27 348 331 8 23 chr3 207068972 207069102 -20455476 - MIR3 SINE MIR -7 201 74 371 289 149 0 chr3 207069666 207069780 -20454798 - L3 LINE CR1 -3 1574 1444 293 331 199 6 chr3 207070928 207071109 -20453469 + MIR SINE MIR 47 262 0 2501 69 0 3 chr3 207071184 207071490 -20453088 + AluY SINE Alu 1 305 -6 1332 78 0 103 chr3 207072761 207072807 -20451771 + L1MA1 LINE L1 6080 6129 -173 2230 99 3 0 chr3 207072807 207073123 -20451455 - AluSp SINE Alu 0 317 1 1332 78 0 103 chr3 207073123 207073318 -20451260 + L1MA1 LINE L1 6129 6297 -5 504 301 20 31 chr3 207073904 207074100 -20450478 + MIR3 SINE MIR 9 202 -6 205 276 81 23 chr3 207074590 207074677 -20449901 - MIR SINE MIR -75 133 42 411 307 92 23 chr3 207075027 207075245 -20449333 + MIR SINE MIR 30 262 0 201 170 0 106 chr3 207075345 207075392 -20449186 + L3 LINE CR1 1516 1557 -20 403 224 146 4 chr3 207075857 207075984 -20448594 + MIR3 SINE MIR 60 203 -5 196 98 24 24 chr3 207076069 207076110 -20448468 + (TTTC)n Simple_repeat Simple_repeat 3 43 0 372 189 0 0 chr3 207076967 207077041 -20447537 + T-rich Low_complexity Low_complexity 1 74 0 21 0 0 0 chr3 207077237 207077258 -20447320 + AT_rich Low_complexity Low_complexity 1 21 0 215 350 95 46 chr3 207078682 207078988 -20445590 + L2 LINE L2 2657 2977 -337 571 289 118 22 chr3 207079048 207079581 -20444997 + L1ME4a LINE L1 5476 6059 -62 2861 140 19 14 chr3 207079593 207080107 -20444471 + L1MC2 LINE L1 5826 6342 -2 216 0 0 0 chr3 207080981 207081005 -20443573 + (T)n Simple_repeat Simple_repeat 1 24 0 22 0 0 0 chr3 207081005 207081027 -20443551 + AT_rich Low_complexity Low_complexity 1 22 0 216 0 0 0 chr3 207081155 207081179 -20443399 + (T)n Simple_repeat Simple_repeat 1 24 0 321 380 0 0 chr3 207081408 207081558 -20443020 + G-rich Low_complexity Low_complexity 1 150 0 206 307 13 0 chr3 207081686 207081761 -20442817 + G-rich Low_complexity Low_complexity 5 80 0 434 225 248 0 chr3 207082944 207083073 -20441505 - MIR SINE MIR -5 257 97 430 289 146 67 chr3 207084359 207084598 -20439980 - MIR SINE MIR 0 262 5 22 35 0 0 chr3 207084619 207084648 -20439930 + AT_rich Low_complexity Low_complexity 1 29 0 180 0 0 0 chr3 207084731 207084751 -20439827 + (TTTA)n Simple_repeat Simple_repeat 4 23 0 6863 59 4 0 chr3 207084752 207086015 -20438563 - L1PA7 LINE L1 -16 6138 4876 1696 91 0 0 chr3 207086016 207086270 -20438308 - L1PA7 LINE L1 -2715 3431 3178 5683 89 1 2 chr3 207086282 207087105 -20437473 - L1P LINE L1 -1262 4884 4063 1495 138 0 4 chr3 207087209 207087462 -20437116 + L1MA3 LINE L1 6054 6305 0 32 43 0 0 chr3 207087465 207087511 -20437067 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr3 207087583 207087604 -20436974 + AT_rich Low_complexity Low_complexity 1 21 0 1758 164 20 3 chr3 207087617 207087916 -20436662 + AluY SINE Alu 1 304 -7 1373 116 57 13 chr3 207088009 207088265 -20436313 + L1P4 LINE L1 5410 5675 -503 921 198 0 0 chr3 207088290 207088447 -20436131 + AluSg/x SINE Alu 130 286 -26 2133 93 0 0 chr3 207088782 207089060 -20435518 + AluSx SINE Alu 5 282 -30 3171 236 53 22 chr3 207089209 207090360 -20434218 + L1MB5 LINE L1 4042 5228 -918 719 31 21 0 chr3 207091414 207091511 -20433067 + (TTTG)n Simple_repeat Simple_repeat 2 100 0 33 25 0 0 chr3 207091748 207091788 -20432790 + AT_rich Low_complexity Low_complexity 1 40 0 2260 97 6 13 chr3 207094521 207094832 -20429746 + AluY SINE Alu 1 309 -2 231 222 111 25 chr3 207096056 207096137 -20428441 + L3 LINE CR1 1317 1404 -173 22 0 0 0 chr3 207098461 207098483 -20426095 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 207101232 207101253 -20423325 + AT_rich Low_complexity Low_complexity 1 21 0 1338 167 0 16 chr3 207102367 207102612 -20421966 + L1PA8 LINE L1 5931 6171 -1 378 182 232 0 chr3 207154135 207154234 -20370344 - L2 LINE L2 -4 3309 3188 219 69 0 0 chr3 207154346 207154375 -20370203 + (CA)n Simple_repeat Simple_repeat 2 30 0 220 49 73 0 chr3 207154489 207154530 -20370048 + (TTTG)n Simple_repeat Simple_repeat 2 45 0 605 49 0 12 chr3 207155259 207155341 -20369237 - AluYa5/8 SINE Alu -9 302 222 24 53 0 0 chr3 207155581 207155619 -20368959 + AT_rich Low_complexity Low_complexity 1 38 0 21 0 0 0 chr3 207155872 207155893 -20368685 + AT_rich Low_complexity Low_complexity 1 21 0 1538 162 58 40 chr3 207156700 207156978 -20367600 + AluJo SINE Alu 1 283 -29 1890 49 4 12 chr3 207157693 207157940 -20366638 + L1PA4 LINE L1 5911 6155 0 217 298 0 0 chr3 207158540 207158597 -20365981 - L2 LINE L2 0 3313 3257 244 291 0 25 chr3 207159602 207159681 -20364897 + GA-rich Low_complexity Low_complexity 5 81 0 3977 185 15 28 chr3 207160201 207160296 -20364282 + L1MB5 LINE L1 5328 5423 -751 2390 90 0 3 chr3 207160296 207160596 -20363982 + AluSx SINE Alu 1 299 -13 3977 185 15 28 chr3 207160596 207161352 -20363226 + L1MB5 LINE L1 5423 6168 -6 639 39 0 0 chr3 207161352 207161430 -20363148 + (GGAA)n Simple_repeat Simple_repeat 3 80 0 244 362 57 0 chr3 207161455 207161560 -20363018 + MER5B DNA MER1_type 59 169 -9 1963 124 25 0 chr3 207161596 207161870 -20362708 + AluSq SINE Alu 1 281 -32 203 0 37 0 chr3 207161870 207161897 -20362681 + (GAAAA)n Simple_repeat Simple_repeat 2 29 0 198 312 21 32 chr3 207162228 207162321 -20362257 - MIR SINE MIR -123 139 48 735 239 75 26 chr3 207162409 207162635 -20361943 + MIR SINE MIR 14 250 -12 21 57 0 0 chr3 207163025 207163060 -20361518 + AT_rich Low_complexity Low_complexity 1 35 0 198 136 204 0 chr3 207164052 207164096 -20360482 + MER5A DNA MER1_type 115 167 -22 5570 195 8 4 chr3 207164625 207165838 -20358740 - L1P LINE L1 -3147 2999 1782 186 339 46 0 chr3 207165846 207165911 -20358667 - L2 LINE L2 -20 3293 3226 2408 84 0 0 chr3 207167560 207167859 -20356719 - AluY SINE Alu -12 299 1 534 245 26 0 chr3 207168160 207168315 -20356263 - MER103 DNA DNA 0 166 8 788 240 192 38 chr3 207168968 207169596 -20354982 + L2 LINE L2 2577 3309 -4 572 288 25 12 chr3 207169776 207169936 -20354642 + MIR SINE MIR 69 230 -32 504 257 56 11 chr3 207170256 207170435 -20354143 - L1MD3 LINE L1 -9 7986 7800 553 257 87 33 chr3 207171498 207171681 -20352897 + MIR SINE MIR 20 212 -50 2350 71 10 32 chr3 207171709 207172018 -20352560 + AluY SINE Alu 2 303 -8 229 104 0 42 chr3 207172135 207172183 -20352395 + (TTTTC)n Simple_repeat Simple_repeat 1 46 0 347 309 68 37 chr3 207173496 207173658 -20350920 - MIR SINE MIR -28 234 68 300 357 60 30 chr3 207174587 207174786 -20349792 + L2 LINE L2 2439 2643 -671 285 253 63 25 chr3 207174883 207174962 -20349616 + L2 LINE L2 3231 3312 -1 442 313 75 6 chr3 207175896 207176056 -20348522 - MIR3 SINE MIR -5 203 33 35 24 0 0 chr3 207177049 207177091 -20347487 + AT_rich Low_complexity Low_complexity 1 42 0 555 228 26 0 chr3 207177581 207177695 -20346883 + MIR SINE MIR 54 170 -92 21 71 0 0 chr3 207177813 207177855 -20346723 + AT_rich Low_complexity Low_complexity 1 42 0 2318 85 3 3 chr3 207178075 207178370 -20346208 - AluSg SINE Alu -15 295 1 297 181 0 0 chr3 207178449 207178543 -20346035 + T-rich Low_complexity Low_complexity 1 94 0 7602 25 5 0 chr3 207178545 207180129 -20344449 - L1PA2 LINE L1 -4 6151 4564 3571 134 3 10 chr3 207180131 207180728 -20343850 - L1P LINE L1 -2286 3860 3268 22 0 0 0 chr3 207180971 207180993 -20343585 + AT_rich Low_complexity Low_complexity 1 22 0 327 269 111 0 chr3 207181040 207181148 -20343430 - MIR3 SINE MIR -5 203 84 231 221 250 0 chr3 207181511 207181579 -20342999 - MIR SINE MIR -107 155 71 963 163 0 52 chr3 207182046 207182218 -20342360 + AluJo SINE Alu 1 163 -149 552 177 88 0 chr3 207182476 207182589 -20341989 + AluJb SINE Alu 177 299 -13 939 266 23 39 chr3 207182989 207183248 -20341330 + MIR SINE MIR 6 260 -2 526 315 87 27 chr3 207183818 207184037 -20340541 - MIR SINE MIR -26 236 5 2174 294 114 38 chr3 207184374 207184614 -20339964 - L2 LINE L2 -10 3303 3083 2378 88 0 0 chr3 207184614 207184909 -20339669 - AluSc SINE Alu -14 295 1 2174 294 114 38 chr3 207184909 207186040 -20338538 - L2 LINE L2 -230 3083 1812 581 234 14 7 chr3 207186208 207186349 -20338229 + L1MC1 LINE L1 6191 6332 -1 355 226 16 89 chr3 207186362 207186486 -20338092 + L1M4 LINE L1 3184 3298 -2848 10046 196 20 38 chr3 207186618 207189957 -20334621 - L1P3 LINE L1 -3146 3315 13 2926 137 4 10 chr3 207189960 207190472 -20334106 - L1PA13 LINE L1 -232 5931 5423 290 220 0 11 chr3 207191705 207191796 -20332782 + GA-rich Low_complexity Low_complexity 2 91 0 343 308 0 10 chr3 207192229 207192333 -20332245 - MIR3 SINE MIR -3 205 103 923 182 6 12 chr3 207192669 207192834 -20331744 + FRAM SINE Alu 1 164 -2 187 339 16 0 chr3 207192856 207192918 -20331660 - MER5B DNA MER1_type -52 126 64 368 40 20 0 chr3 207194066 207194116 -20330462 + (TCTA)n Simple_repeat Simple_repeat 3 53 0 550 210 68 51 chr3 207194379 207194555 -20330023 + MIR SINE MIR 38 216 -46 329 274 137 8 chr3 207197423 207197547 -20327031 + L2 LINE L2 3133 3272 0 371 144 0 113 chr3 207197913 207198010 -20326568 + MLT1A1 LTR MaLR 1 86 -279 1456 117 0 0 chr3 207198010 207198206 -20326372 + AluSg SINE Alu 1 196 -114 707 296 41 5 chr3 207198884 207199104 -20325474 - MIR SINE MIR -1 261 34 1042 202 25 0 chr3 207199109 207199312 -20325266 + MER3 DNA MER1_type 2 209 0 250 340 43 32 chr3 207199312 207199406 -20325172 + L2 LINE L2 3148 3242 -30 1993 119 48 7 chr3 207199969 207200263 -20324315 + AluSq SINE Alu 1 306 -7 394 296 73 17 chr3 207200506 207200685 -20323893 - MER5A DNA MER1_type 0 189 1 370 311 34 44 chr3 207200946 207201152 -20323426 + MLT1K LTR MaLR 222 425 -163 202 136 0 23 chr3 207203526 207203570 -20321008 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 457 257 35 9 chr3 207203803 207203916 -20320662 - L2 LINE L2 0 3272 3157 645 291 51 17 chr3 207205035 207205269 -20319309 + MIR SINE MIR 11 252 -10 363 242 65 81 chr3 207205294 207205383 -20319195 - MIR SINE MIR -77 185 96 1705 166 73 15 chr3 207205383 207205726 -20318852 - THE1B LTR MaLR 0 364 2 363 242 65 81 chr3 207205726 207205822 -20318756 - MIR SINE MIR -166 96 3 769 284 226 12 chr3 207206580 207207084 -20317494 - MLT1L LTR MaLR 0 615 4 515 291 102 19 chr3 207207092 207207298 -20317280 + MIR SINE MIR 34 256 -6 2479 60 3 35 chr3 207208122 207208441 -20316137 - AluSp SINE Alu -4 309 1 326 260 221 7 chr3 207208586 207208740 -20315838 + MIR3 SINE MIR 15 201 -7 277 257 0 27 chr3 207209095 207209169 -20315409 + CT-rich Low_complexity Low_complexity 3 74 0 631 301 80 9 chr3 207209264 207209490 -20315088 + MIR SINE MIR 21 262 0 421 301 60 0 chr3 207212252 207212385 -20312193 - L2 LINE L2 -8 3305 3165 488 229 0 0 chr3 207214011 207214116 -20310462 + MER94 DNA DNA 1 105 -29 1801 96 0 0 chr3 207214422 207214672 -20309906 + L1PA8 LINE L1 5923 6172 0 368 301 164 7 chr3 207215132 207215278 -20309300 + MIR SINE MIR 7 175 -87 21 82 0 0 chr3 207216415 207216464 -20308114 + AT_rich Low_complexity Low_complexity 1 49 0 246 289 26 70 chr3 207216535 207216691 -20307887 + L1MC/D LINE L1 5589 5737 -2071 22 35 0 0 chr3 207216980 207217009 -20307569 + AT_rich Low_complexity Low_complexity 1 29 0 231 284 95 0 chr3 207217078 207217152 -20307426 - MIR SINE MIR -24 238 158 472 146 11 11 chr3 207217685 207217774 -20306804 + GA-rich Low_complexity Low_complexity 4 92 0 457 129 21 21 chr3 207217812 207217905 -20306673 + GA-rich Low_complexity Low_complexity 3 95 0 1066 225 57 0 chr3 207217940 207218167 -20306411 + MLT1A1 LTR MaLR 126 365 0 452 278 212 5 chr3 207218422 207218620 -20305958 + MIR SINE MIR 21 259 -3 1578 73 0 0 chr3 207220550 207220755 -20303823 + L1PA12 LINE L1 5949 6153 -15 237 132 0 0 chr3 207220768 207220806 -20303772 + (A)n Simple_repeat Simple_repeat 1 38 0 292 337 19 11 chr3 207221400 207221540 -20303038 + MIR SINE MIR 45 180 -63 541 280 142 5 chr3 207221741 207221959 -20302619 - MIR SINE MIR 0 262 15 188 324 164 35 chr3 207223478 207223765 -20300813 + L2 LINE L2 2652 2975 -339 2113 111 0 3 chr3 207224098 207224387 -20300191 + AluSx SINE Alu 1 288 -24 221 57 29 0 chr3 207224405 207224440 -20300138 + (TAAAAA)n Simple_repeat Simple_repeat 5 40 0 355 266 97 18 chr3 207224525 207224638 -20299940 - L2 LINE L2 -1 3271 3150 251 372 38 3 chr3 207225040 207225166 -20299412 + MIR SINE MIR 3 131 -77 * 467 255 102 6 chr3 207225165 207225322 -20299256 + MIR SINE MIR 89 260 -2 264 219 49 24 chr3 207225530 207225612 -20298966 + MIR SINE MIR 59 142 -120 385 310 148 0 chr3 207227567 207227709 -20296869 - MIR SINE MIR -6 256 94 288 0 0 0 chr3 207227988 207228020 -20296558 + (T)n Simple_repeat Simple_repeat 1 32 0 556 278 17 51 chr3 207228187 207228363 -20296215 + MIR3 SINE MIR 36 205 -3 882 177 80 0 chr3 207228420 207228595 -20295983 - MER5A DNA MER1_type 0 189 1 2386 66 0 10 chr3 207228683 207228988 -20295590 - AluY SINE Alu -9 302 1 1574 109 0 9 chr3 207229194 207229414 -20295164 + AluSg/x SINE Alu 78 295 -15 628 230 155 10 chr3 207229582 207229782 -20294796 + MIR SINE MIR 34 262 0 1705 197 24 60 chr3 207231868 207232371 -20292207 - L1ME2 LINE L1 -57 6107 5623 482 290 159 71 chr3 207232421 207232917 -20291661 + L1MC5 LINE L1 7326 7865 -96 2811 184 82 17 chr3 207233624 207234498 -20290080 - MER45B DNA AcHobo -20 1020 11 1839 62 0 4 chr3 207235106 207235347 -20289231 - L1PA13 LINE L1 0 6163 5924 5424 74 34 12 chr3 207235356 207236154 -20288424 - L1PA10 LINE L1 -20 6148 5334 419 304 24 0 chr3 207236642 207236767 -20287811 + MIR3 SINE MIR 64 191 -17 22 0 0 0 chr3 207237279 207237301 -20287277 + AT_rich Low_complexity Low_complexity 1 22 0 477 312 85 0 chr3 207239666 207239865 -20284713 - MIR SINE MIR 0 262 47 258 239 0 30 chr3 207239929 207239996 -20284582 - L2 LINE L2 -3 3310 3246 214 273 0 45 chr3 207240662 207240728 -20283850 + L2 LINE L2 3241 3303 -10 339 296 48 24 chr3 207242168 207242293 -20282285 - MER5B DNA MER1_type -49 129 2 215 388 103 9 chr3 207242452 207242568 -20282010 - L2 LINE L2 -12 3260 3134 254 320 102 88 chr3 207242615 207242833 -20281745 - L2 LINE L2 0 3272 3046 368 20 20 0 chr3 207242833 207242882 -20281696 + (TG)n Simple_repeat Simple_repeat 2 51 0 254 320 102 88 chr3 207242882 207243025 -20281553 - L2 LINE L2 -226 3046 2906 192 182 0 0 chr3 207243283 207243327 -20281251 + GA-rich Low_complexity Low_complexity 1 44 0 25 31 0 0 chr3 207243686 207243718 -20280860 + AT_rich Low_complexity Low_complexity 1 32 0 33022 42 31 3 chr3 207245270 207249636 -20274942 + L1P LINE L1 3 4492 -1654 337 340 87 21 chr3 207249922 207250163 -20274415 + L1M2 LINE L1 3668 3924 -2222 372 271 123 29 chr3 207250180 207250424 -20274154 + L1M2 LINE L1 5383 5649 -663 2309 107 3 0 chr3 207250529 207250838 -20273740 + AluSg SINE Alu 1 310 0 1509 220 8 5 chr3 207251622 207251999 -20272579 + L1P4 LINE L1 4126 4503 -1643 2760 120 16 38 chr3 207252166 207252782 -20271796 + L1P4 LINE L1 5119 5702 -463 2921 136 25 47 chr3 207252783 207253314 -20271264 + L1PA15 LINE L1 5643 6161 -4 316 291 151 17 chr3 207254691 207254863 -20269715 - MIR SINE MIR -15 247 53 1247 123 0 11 chr3 207254952 207255139 -20269439 - L1PA15 LINE L1 -1 6164 5980 992 174 5 0 chr3 207255240 207255430 -20269148 - L1P LINE L1 -1230 4916 4726 23 0 0 0 chr3 207255607 207255630 -20268948 + AT_rich Low_complexity Low_complexity 1 23 0 7102 57 2 4 chr3 207255679 207257277 -20267301 + L1PA5 LINE L1 4558 6154 0 545 301 96 12 chr3 207257374 207257719 -20266859 + L1MC5 LINE L1 1431 1804 -4592 865 216 95 39 chr3 207257888 207257999 -20266579 + L1ME3 LINE L1 5858 5961 -201 2041 139 10 7 chr3 207257999 207258302 -20266276 + AluSx SINE Alu 1 304 -8 865 216 95 39 chr3 207258302 207258473 -20266105 + L1ME3 LINE L1 5961 6156 -6 770 243 183 39 chr3 207258478 207259047 -20265531 + L1M4 LINE L1 3841 4537 -1609 5451 145 39 0 chr3 207259047 207260360 -20264218 - L1PA16 LINE L1 -9 6157 4823 770 243 183 39 chr3 207260360 207260510 -20264068 + L1M4 LINE L1 4537 4664 -1482 841 235 0 0 chr3 207260518 207260684 -20263894 + FRAM SINE Alu 1 166 -10 401 290 89 35 chr3 207260685 207261178 -20263400 + L1M4 LINE L1 4660 5179 -967 426 158 75 50 chr3 207261708 207261828 -20262750 + L1ME3A LINE L1 6042 6164 -6 182 36 0 36 chr3 207262037 207262065 -20262513 + (GAAA)n Simple_repeat Simple_repeat 4 30 0 480 286 68 59 chr3 207262134 207263187 -20261391 + L1MC5 LINE L1 4349 5417 -798 1588 185 3 45 chr3 207263245 207263532 -20261046 - AluJo SINE Alu -35 277 3 376 297 61 65 chr3 207263553 207263863 -20260715 + L1MC5 LINE L1 5671 5979 -1898 288 0 0 0 chr3 207263865 207263897 -20260681 + (TG)n Simple_repeat Simple_repeat 2 33 0 1560 208 37 3 chr3 207264004 207264331 -20260247 - MER2 DNA MER2_type -6 339 2 3422 216 74 48 chr3 207264603 207265865 -20258713 + L1MC5 LINE L1 6693 7986 -44 293 292 84 19 chr3 207266892 207267046 -20257532 - MIR SINE MIR 0 262 99 318 293 82 0 chr3 207267500 207267615 -20256963 + MIR SINE MIR 30 151 -63 2135 54 0 15 chr3 207267765 207268024 -20256554 + AluY SINE Alu 41 295 -16 2251 95 3 0 chr3 207269036 207269330 -20255248 + AluSg SINE Alu 1 295 -15 214 261 0 0 chr3 207270478 207270524 -20254054 - L2 LINE L2 -8 3264 3219 3391 89 0 10 chr3 207270600 207271082 -20253496 + L1PA13 LINE L1 5687 6163 0 269 245 0 0 chr3 207271143 207271192 -20253386 - L2 LINE L2 -202 3070 3022 32 0 0 0 chr3 207271888 207271920 -20252658 + AT_rich Low_complexity Low_complexity 1 32 0 311 233 83 25 chr3 207272010 207272130 -20252448 - MIR3 SINE MIR -72 136 10 42 48 0 0 chr3 207273741 207273804 -20250774 + AT_rich Low_complexity Low_complexity 1 63 0 34 24 0 0 chr3 207275164 207275205 -20249373 + AT_rich Low_complexity Low_complexity 1 41 0 182 389 0 0 chr3 207275258 207275312 -20249266 + MIR SINE MIR 21 74 -188 1483 190 21 97 chr3 207275452 207275873 -20248705 + MLT1B LTR MaLR 1 389 -1 244 269 0 0 chr3 207277411 207277478 -20247100 + CT-rich Low_complexity Low_complexity 2 68 0 195 263 63 32 chr3 207277594 207277689 -20246889 + MIR SINE MIR 165 262 0 209 378 63 0 chr3 207278247 207278374 -20246204 + L2 LINE L2 3137 3271 -1 1837 169 26 7 chr3 207278918 207279291 -20245287 + L1MC2 LINE L1 4957 5321 -1023 2326 105 0 0 chr3 207279291 207279586 -20244992 + AluSg SINE Alu 1 295 -15 1837 169 26 7 chr3 207279586 207280398 -20244180 + L1MC2 LINE L1 5321 6336 -8 2210 117 3 0 chr3 207280589 207280887 -20243691 + AluSx SINE Alu 1 299 -13 267 298 132 26 chr3 207281446 207281560 -20243018 - L2 LINE L2 -8 3264 3139 682 298 73 28 chr3 207282704 207282901 -20241677 + MIR SINE MIR 2 214 -48 486 61 0 0 chr3 207282901 207282967 -20241611 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 682 298 73 28 chr3 207282967 207283017 -20241561 + MIR SINE MIR 214 260 -2 217 216 0 0 chr3 207283018 207283055 -20241523 + (CAT)n Simple_repeat Simple_repeat 1 37 0 298 327 62 0 chr3 207284048 207284161 -20240417 - L2 LINE L2 -5 3308 3189 753 189 8 0 chr3 207285353 207285518 -20239060 - FLAM_A SINE Alu 0 166 1 268 250 0 44 chr3 207285814 207285882 -20238696 - L2 LINE L2 -8 3305 3241 10936 156 34 21 chr3 207287302 207289303 -20235275 + ERVL LTR ERVL 2629 4653 -1111 294 27 0 0 chr3 207289303 207289340 -20235238 - L1P LINE L1 -2091 4055 4019 7083 58 0 2 chr3 207289341 207290348 -20234230 + L1PA5 LINE L1 5147 6151 -3 853 200 0 0 chr3 207290361 207290521 -20234057 + ERVL LTR ERVL 4650 4809 -955 213 94 0 0 chr3 207291570 207291602 -20232976 + (TG)n Simple_repeat Simple_repeat 2 33 0 291 263 253 37 chr3 207292108 207292298 -20232280 + MIR SINE MIR 17 247 -15 1498 171 66 49 chr3 207292337 207292623 -20231955 - AluJo SINE Alu -21 291 1 229 322 0 0 chr3 207292851 207292910 -20231668 - L2 LINE L2 -10 3303 3245 549 257 18 0 chr3 207292987 207293100 -20231478 + MER5B DNA MER1_type 58 172 -6 340 317 70 16 chr3 207295116 207295302 -20229276 - MER117 DNA MER1_type 0 197 2 214 239 22 145 chr3 207295312 207295355 -20229223 - L3 LINE CR1 -16 1561 1514 2495 69 0 0 chr3 207295355 207295658 -20228920 - AluY SINE Alu -8 303 1 214 239 22 145 chr3 207295658 207295752 -20228826 - L3 LINE CR1 -63 1514 1441 2344 77 3 7 chr3 207296216 207296516 -20228062 - AluSg SINE Alu -11 299 1 337 253 13 0 chr3 207298760 207298839 -20225739 + MIR3 SINE MIR 115 194 -14 434 248 60 15 chr3 207299499 207299632 -20224946 + MIR SINE MIR 59 197 -65 285 320 0 31 chr3 207299692 207299789 -20224789 - L2 LINE L2 -8 3264 3171 231 352 56 28 chr3 207300112 207300220 -20224358 - L2 LINE L2 -17 3296 3186 2630 7 51 0 chr3 207300368 207300664 -20223914 - AluYa5 SINE Alu 0 311 1 328 296 135 35 chr3 207302594 207302824 -20221754 + L1ME3 LINE L1 5632 5884 -278 240 277 15 0 chr3 207304723 207304788 -20219790 + MIR SINE MIR 20 85 -123 255 255 36 161 chr3 207304840 207304984 -20219594 - MER5B DNA MER1_type -7 171 55 2302 92 23 0 chr3 207304984 207305290 -20219288 + AluSq SINE Alu 1 313 0 255 255 36 161 chr3 207305290 207305337 -20219241 - MER5B DNA MER1_type -123 55 4 393 239 275 0 chr3 207305344 207305482 -20219096 - MER5A DNA MER1_type -5 184 9 201 229 0 0 chr3 207305492 207305540 -20219038 + MIR3 SINE MIR 155 202 -6 302 365 122 8 chr3 207305979 207306341 -20218237 - L2 LINE L2 -219 3053 2654 557 318 18 42 chr3 207306430 207306810 -20217768 + L1MC4a LINE L1 5681 6051 -1757 21 57 0 0 chr3 207306999 207307034 -20217544 + AT_rich Low_complexity Low_complexity 1 35 0 503 277 186 0 chr3 207309132 207309309 -20215269 + MIR SINE MIR 33 242 -20 286 221 18 71 chr3 207309348 207309461 -20215117 + MIR3 SINE MIR 102 208 0 230 224 0 0 chr3 207309508 207309557 -20215021 + L1ME LINE L1 5765 5813 -308 1280 146 82 67 chr3 207309700 207310015 -20214563 - MER33 DNA MER1_type 0 324 5 180 225 214 22 chr3 207310449 207310538 -20214040 - MIR SINE MIR 0 262 157 472 230 79 42 chr3 207310619 207310784 -20213794 + MIR SINE MIR 78 248 -14 418 301 34 27 chr3 207310781 207310927 -20213651 - MIR SINE MIR -96 166 20 * 302 301 114 16 chr3 207313574 207313697 -20210881 - L2 LINE L2 -26 3246 3112 280 321 9 9 chr3 207314524 207314630 -20209948 - MIR SINE MIR -80 128 23 357 244 80 66 chr3 207315096 207315309 -20209269 - L2 LINE L2 0 3313 3098 280 246 0 114 chr3 207315468 207315582 -20208996 + MIR SINE MIR 107 207 -55 4586 163 26 9 chr3 207316639 207317111 -20207467 + ERVL-B1 LTR ERVL 4947 5440 -324 411 21 0 0 chr3 207317111 207317159 -20207419 + (TA)n Simple_repeat Simple_repeat 1 48 0 4586 163 26 9 chr3 207317159 207317483 -20207095 + ERVL-B1 LTR ERVL 5440 5757 -7 2788 177 12 10 chr3 207317483 207317964 -20206614 + MLT2B1 LTR ERVL 1 482 -38 228 67 0 0 chr3 207317967 207317997 -20206581 + (CCTA)n Simple_repeat Simple_repeat 1 30 0 313 125 0 0 chr3 207318001 207318049 -20206529 + MLT2B1 LTR ERVL 470 517 -3 876 196 0 0 chr3 207318448 207318586 -20205992 + FRAM SINE Alu 2 139 -37 871 265 94 56 chr3 207318895 207319375 -20205203 + MLT1H LTR MaLR 52 549 0 332 43 22 0 chr3 207319512 207319558 -20205020 + (TAGA)n Simple_repeat Simple_repeat 4 50 0 255 195 58 0 chr3 207319572 207319659 -20204919 + (TA)n Simple_repeat Simple_repeat 1 92 0 192 77 0 0 chr3 207320083 207320109 -20204469 + (T)n Simple_repeat Simple_repeat 1 26 0 1741 155 41 7 chr3 207320124 207320453 -20204125 - AluJb SINE Alu 0 312 12 760 297 82 82 chr3 207320568 207321201 -20203377 + L2 LINE L2 2272 2904 -410 380 264 28 28 chr3 207322900 207323078 -20201500 - L1ME4a LINE L1 -238 5883 5706 924 162 28 28 chr3 207323702 207323881 -20200697 + MLT1B LTR MaLR 3 181 -209 1432 298 106 48 chr3 207376261 207377291 -20147287 - L2 LINE L2 0 3313 2192 2059 118 7 20 chr3 207377291 207377595 -20146983 - AluSx SINE Alu -12 300 1 1432 298 106 48 chr3 207377595 207377787 -20146791 - L2 LINE L2 -1121 2192 2013 185 244 0 0 chr3 207378457 207378498 -20146080 + L2 LINE L2 3209 3249 -23 2169 112 0 3 chr3 207379191 207379485 -20145093 - AluSg SINE Alu -17 293 1 277 226 21 43 chr3 207381158 207381251 -20143327 - L2 LINE L2 -1 3312 3222 583 212 91 12 chr3 207381340 207381505 -20143073 - MER5B DNA MER1_type 0 178 1 183 259 138 0 chr3 207381539 207381597 -20142981 - L2 LINE L2 0 3272 3207 308 331 56 8 chr3 207381931 207382085 -20142493 - MIR SINE MIR -6 202 41 2336 109 0 0 chr3 207382087 207382398 -20142180 + AluSq SINE Alu 1 311 -2 283 263 78 95 chr3 207382414 207382593 -20141985 - MIR3 SINE MIR 0 208 33 750 206 29 18 chr3 207382924 207383094 -20141484 - MER5B DNA MER1_type -5 173 2 1426 172 29 44 chr3 207383308 207383691 -20140887 + L1MD3 LINE L1 7619 7995 0 1653 171 7 10 chr3 207383702 207383995 -20140583 + AluSx SINE Alu 1 292 -20 414 0 0 0 chr3 207384743 207384789 -20139789 + (CA)n Simple_repeat Simple_repeat 1 46 0 182 37 37 0 chr3 207385100 207385127 -20139451 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 536 269 130 16 chr3 207387630 207387853 -20136725 - MIR SINE MIR 0 262 9 195 286 41 0 chr3 207388616 207388665 -20135913 - L2 LINE L2 -24 3289 3239 244 328 8 46 chr3 207389565 207389696 -20134882 + L2 LINE L2 2935 3060 -212 620 315 92 25 chr3 207390449 207390849 -20133729 + LTR16B LTR ERVL 36 462 -2 370 270 7 88 chr3 207390923 207391060 -20133518 - L2 LINE L2 0 3313 3188 1168 203 9 0 chr3 207391552 207391769 -20132809 + MER58A DNA MER1_type 6 224 0 393 302 82 30 chr3 207393015 207393283 -20131295 - L1MC4 LINE L1 -1003 7039 6758 22 0 0 0 chr3 207393392 207393414 -20131164 + AT_rich Low_complexity Low_complexity 1 22 0 1912 157 3 6 chr3 207394712 207395025 -20129553 - AluSx SINE Alu 0 312 1 202 310 133 25 chr3 207395093 207395251 -20129327 - MIR SINE MIR 0 262 88 1375 198 20 4 chr3 207395452 207395700 -20128878 - AluJb SINE Alu -60 252 1 387 297 78 57 chr3 207396301 207396493 -20128085 + L2 LINE L2 2439 2634 -680 305 261 45 11 chr3 207398800 207398888 -20125690 + L1MDa LINE L1 2441 2531 -4009 305 213 115 16 chr3 207398890 207398968 -20125610 + AluJb SINE Alu 200 278 -24 468 0 0 0 chr3 207398968 207399020 -20125558 + (TA)n Simple_repeat Simple_repeat 1 52 0 964 198 24 8 chr3 207399025 207399272 -20125306 + L1MDa LINE L1 1050 1300 -5240 419 50 17 0 chr3 207399285 207399345 -20125233 + Alu SINE Alu 243 303 -9 7090 134 2 1 chr3 207399446 207401380 -20123198 + L1PA14 LINE L1 4227 6160 -1 378 314 34 25 chr3 207402231 207402349 -20122229 + L2 LINE L2 3154 3272 0 253 265 15 44 chr3 207402404 207402472 -20122106 - L2 LINE L2 -2 3270 3205 535 248 51 13 chr3 207402533 207402690 -20121888 - MIR SINE MIR 0 262 100 265 320 0 0 chr3 207402911 207402986 -20121592 - L2 LINE L2 0 3272 3198 342 203 34 155 chr3 207403076 207403367 -20121211 - L1M4 LINE L1 -2083 4063 3808 297 241 52 79 chr3 207403379 207403669 -20120909 - L1M4 LINE L1 -2678 3468 3187 838 254 104 61 chr3 207403681 207404434 -20120144 - L1M4 LINE L1 -3060 3086 2302 435 226 44 7 chr3 207404437 207404574 -20120004 + L1ME4a LINE L1 5977 6118 -3 5784 99 19 6 chr3 207404730 207405712 -20118866 - L1PB2 LINE L1 -2 6149 5157 300 339 52 28 chr3 207406548 207406796 -20117782 + L2 LINE L2 3045 3298 -15 192 40 0 0 chr3 207406798 207406823 -20117755 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 525 252 78 46 chr3 207407555 207407773 -20116805 - MIR SINE MIR -12 250 26 249 83 0 0 chr3 207407925 207407961 -20116617 + (CA)n Simple_repeat Simple_repeat 1 36 0 251 345 44 0 chr3 207408678 207408791 -20115787 + L2 LINE L2 3196 3313 0 413 191 149 11 chr3 207408944 207409038 -20115540 + L2 LINE L2 3207 3313 0 276 224 0 0 chr3 207410775 207410824 -20113754 - MIR SINE MIR -82 126 78 2346 103 0 0 chr3 207411140 207411450 -20113128 + AluSg SINE Alu 1 310 0 511 326 0 7 chr3 207411528 207411675 -20112903 + MIR SINE MIR 11 156 -106 468 311 122 15 chr3 207412018 207412214 -20112364 - MIR SINE MIR -32 230 14 4904 150 62 33 chr3 207412281 207412455 -20112123 + L1MC3 LINE L1 6717 6885 -900 183 42 0 0 chr3 207412455 207412479 -20112099 + (CA)n Simple_repeat Simple_repeat 2 25 0 4904 150 62 33 chr3 207412479 207413343 -20111235 + L1MC3 LINE L1 6885 7785 0 411 307 107 0 chr3 207413678 207413818 -20110760 + L2 LINE L2 3118 3272 0 940 351 36 23 chr3 207414383 207414993 -20109585 - ERVL LTR ERVL -1063 4701 4084 1468 316 47 45 chr3 207415056 207416149 -20108429 - ERVL LTR ERVL -1330 3944 2896 5334 128 3 73 chr3 207416200 207417782 -20106796 + L1PB1 LINE L1 4678 6147 -4 1289 139 5 0 chr3 207417972 207418174 -20106404 - L1MC/D LINE L1 -518 5815 5613 372 252 0 47 chr3 207418174 207418281 -20106297 - ERVL LTR ERVL -3453 2311 2210 2295 109 7 0 chr3 207418390 207418694 -20105884 + AluSp SINE Alu 3 308 -5 1669 260 52 40 chr3 207418910 207419704 -20104874 + L1M1 LINE L1 2792 3575 -3992 2099 135 0 0 chr3 207419704 207420001 -20104577 + AluSx SINE Alu 1 297 -15 1669 260 52 40 chr3 207420001 207420024 -20104554 + L1M1 LINE L1 3575 3596 -3971 180 0 0 0 chr3 207420024 207420044 -20104534 + (CAA)n Simple_repeat Simple_repeat 2 21 0 1669 260 52 40 chr3 207420044 207420100 -20104478 + L1M1 LINE L1 3596 3681 -3886 5022 196 39 7 chr3 207421446 207422703 -20101875 + L1M1 LINE L1 3690 4986 -2579 2713 35 0 0 chr3 207422713 207423027 -20101551 + AluYb8 SINE Alu 1 314 -4 333 229 24 127 chr3 207423339 207423505 -20101073 - L2 LINE L2 -1 3312 3164 239 270 34 34 chr3 207425415 207425504 -20099074 - MIR SINE MIR -14 248 160 27 0 0 0 chr3 207425663 207425690 -20098888 + AT_rich Low_complexity Low_complexity 1 27 0 257 75 25 0 chr3 207426795 207426835 -20097743 + (GGAA)n Simple_repeat Simple_repeat 4 44 0 272 340 62 9 chr3 207426904 207427040 -20097538 - MIR SINE MIR -66 142 15 23 0 0 0 chr3 207427929 207427952 -20096626 + AT_rich Low_complexity Low_complexity 1 23 0 410 307 37 42 chr3 207427961 207428134 -20096444 + MIR SINE MIR 27 196 -63 331 345 56 28 chr3 207429318 207429460 -20095118 + L2 LINE L2 3118 3263 -9 2051 100 0 0 chr3 207430034 207430294 -20094284 - AluSg SINE Alu -50 260 1 1754 136 4 0 chr3 207430941 207431213 -20093365 + AluSq SINE Alu 36 308 0 259 330 11 47 chr3 207431676 207431915 -20092663 - MLT1H LTR MaLR -124 285 54 240 346 20 40 chr3 207431978 207432079 -20092499 + L2 LINE L2 2936 3034 -279 216 294 135 0 chr3 207433139 207433265 -20091313 + MIR SINE MIR 82 224 -38 229 305 0 0 chr3 207433875 207433934 -20090644 + L3 LINE CR1 1517 1575 -2 23 0 0 0 chr3 207434110 207434133 -20090445 + AT_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 207434946 207434969 -20089609 + AT_rich Low_complexity Low_complexity 1 23 0 193 0 94 0 chr3 207435033 207435065 -20089513 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 529 217 43 0 chr3 207435335 207435450 -20089128 - L2 LINE L2 0 3313 3194 384 273 127 10 chr3 207435774 207435979 -20088599 + L1ME4a LINE L1 5806 6034 -87 21 0 0 0 chr3 207436871 207436892 -20087686 + AT_rich Low_complexity Low_complexity 1 21 0 260 27 27 0 chr3 207437036 207437073 -20087505 + (TG)n Simple_repeat Simple_repeat 2 39 0 200 226 16 0 chr3 207438013 207438075 -20086503 + GA-rich Low_complexity Low_complexity 1 63 0 26 30 0 0 chr3 207438810 207438843 -20085735 + AT_rich Low_complexity Low_complexity 1 33 0 224 30 30 0 chr3 207439814 207439847 -20084731 + (CAAAAA)n Simple_repeat Simple_repeat 1 34 0 469 271 24 65 chr3 207440189 207440359 -20084219 + MIR3 SINE MIR 39 201 -7 616 272 94 0 chr3 207440779 207440981 -20083597 + MIR SINE MIR 5 225 -37 208 234 0 21 chr3 207441932 207441979 -20082599 + L2 LINE L2 3219 3264 -8 2137 120 10 3 chr3 207441982 207442290 -20082288 - AluSq SINE Alu -3 310 1 382 279 12 29 chr3 207442675 207442847 -20081731 + GA-rich Low_complexity Low_complexity 2 170 0 419 305 63 15 chr3 207443013 207443282 -20081296 + L1M3d LINE L1 1 282 -5609 4430 262 12 6 chr3 207443336 207444649 -20079929 + L1M3de LINE L1 30 1421 -5232 2074 141 72 23 chr3 207444649 207444996 -20079582 - THE1B LTR MaLR 0 364 1 1840 52 0 24 chr3 207444996 207445245 -20079333 - THE1B-int LTR MaLR 0 1580 1338 1162 284 52 74 chr3 207445402 207445527 -20079051 - L1MEc LINE L1 -5268 1128 1002 2315 151 13 0 chr3 207445527 207445912 -20078666 - MLT1B LTR MaLR 0 390 1 1162 284 52 74 chr3 207445912 207446114 -20078464 - L1MEc LINE L1 -5394 1002 797 1244 72 0 12 chr3 207446114 207446280 -20078298 - L1PA11 LINE L1 0 6174 6011 1162 284 52 74 chr3 207446280 207447048 -20077530 - L1MEc LINE L1 -5599 797 56 2306 74 10 10 chr3 207447667 207447964 -20076614 + AluY SINE Alu 1 297 -14 233 246 0 0 chr3 207448417 207448478 -20076100 - L1P2 LINE L1 -565 5589 5529 239 305 32 21 chr3 207450842 207450937 -20073641 + MIR3 SINE MIR 1 96 -112 252 86 0 0 chr3 207452995 207453030 -20071548 + (A)n Simple_repeat Simple_repeat 1 35 0 366 241 90 35 chr3 207453064 207453209 -20071369 - L1MC5 LINE L1 -108 7853 7701 288 137 0 0 chr3 207453634 207453685 -20070893 + (TTCA)n Simple_repeat Simple_repeat 1 51 0 2407 78 0 3 chr3 207454112 207454418 -20070160 + AluY SINE Alu 1 305 -6 356 221 13 0 chr3 207455130 207455207 -20069371 - MIR SINE MIR -120 142 65 412 273 64 0 chr3 207455925 207456035 -20068543 + MIR SINE MIR 31 147 -61 1194 0 0 0 chr3 207456160 207456286 -20068292 - AluYb8 SINE Alu -192 126 1 483 270 122 11 chr3 207456451 207456640 -20067938 + L2 LINE L2 3104 3313 0 822 174 134 47 chr3 207456897 207457150 -20067428 + ORSL DNA AcHobo 1 275 0 497 289 102 3 chr3 207458066 207458267 -20066311 + MIR SINE MIR 45 262 0 218 50 17 83 chr3 207458410 207458470 -20066108 + (TTTG)n Simple_repeat Simple_repeat 1 56 0 2011 145 50 34 chr3 207459607 207459965 -20064613 + THE1B LTR MaLR 1 364 0 5035 151 64 4 chr3 207460917 207462341 -20062237 + L1MA7 LINE L1 4789 6291 0 2067 188 56 17 chr3 207462616 207463026 -20061552 - MSTB LTR MaLR 0 426 1 387 214 160 15 chr3 207463155 207463286 -20061292 - HAL1b LINE L1 -958 390 241 293 207 25 33 chr3 207463659 207463780 -20060798 - HAL1b LINE L1 -549 799 680 395 256 31 25 chr3 207463819 207463979 -20060599 - HAL1b LINE L1 -757 591 431 * 2223 234 31 13 chr3 207463976 207464591 -20059987 + L1MC4 LINE L1 7210 7835 -207 339 311 44 7 chr3 207466215 207466350 -20058228 - L2 LINE L2 -7 3306 3167 437 257 132 7 chr3 207466582 207466734 -20057844 - MIR SINE MIR -6 256 86 215 105 53 0 chr3 207469259 207469297 -20055281 + T-rich Low_complexity Low_complexity 2 41 0 6372 17 1 10 chr3 207469566 207470432 -20054146 - L1PA3 LINE L1 -126 6029 5171 988 216 75 14 chr3 207470441 207471260 -20053318 - L1ME1 LINE L1 -227 5943 5066 681 228 73 21 chr3 207471260 207471493 -20053085 + MLT1D LTR MaLR 251 495 -10 266 260 39 8 chr3 207471496 207471623 -20052955 - L1ME1 LINE L1 -1773 4373 4243 297 313 50 10 chr3 207471745 207471844 -20052734 + MIR SINE MIR 40 142 -120 484 277 58 70 chr3 207472408 207472838 -20051740 - L1MC4a LINE L1 -89 6032 5607 248 221 0 0 chr3 207472949 207473017 -20051561 - L1P5 LINE L1 -723 5431 5364 232 262 101 95 chr3 207473021 207473189 -20051389 + MIR SINE MIR 9 136 -72 21 0 0 0 chr3 207475236 207475257 -20049321 + AT_rich Low_complexity Low_complexity 1 21 0 595 241 177 0 chr3 207475575 207475733 -20048845 - MER5A DNA MER1_type 0 189 4 21 0 0 0 chr3 207478738 207478759 -20045819 + AT_rich Low_complexity Low_complexity 1 21 0 274 285 70 92 chr3 207479106 207479334 -20045244 - L3 LINE CR1 -35 1542 1320 263 244 89 11 chr3 207479388 207479478 -20045100 - MER5A DNA MER1_type -1 188 92 754 277 114 43 chr3 207479575 207480123 -20044455 + L2 LINE L2 1891 3312 -1 764 289 175 26 chr3 207480142 207480571 -20044007 - L3 LINE CR1 -439 1138 646 614 247 95 21 chr3 207480587 207480777 -20043801 + MIR SINE MIR 35 238 -24 279 292 0 0 chr3 207480776 207480841 -20043737 + L2 LINE L2 3197 3261 -11 * 449 350 38 38 chr3 207480847 207481113 -20043465 - L3 LINE CR1 -942 635 370 3507 167 38 34 chr3 207481127 207481919 -20042659 + L1MA5 LINE L1 11 805 -5984 6492 159 28 20 chr3 207482397 207484635 -20039943 + L1MA5 LINE L1 4627 6885 -57 372 313 18 0 chr3 207485091 207485203 -20039375 - MIR SINE MIR -119 143 30 1920 158 7 3 chr3 207485297 207485594 -20038984 + AluSx SINE Alu 1 298 -14 288 343 52 28 chr3 207485981 207486229 -20038349 + L2 LINE L2 3045 3298 -15 2360 223 97 26 chr3 207486536 207487718 -20036860 + L1M2 LINE L1 4214 5487 -711 697 226 0 0 chr3 207487718 207487851 -20036727 + FLAM_A SINE Alu 1 133 0 2360 223 97 26 chr3 207487851 207487872 -20036706 + L1M2 LINE L1 5487 5505 -693 392 298 33 72 chr3 207487969 207488205 -20036373 + L1M4c LINE L1 1109 1474 -4898 185 244 0 0 chr3 207488274 207488315 -20036263 - L2 LINE L2 -23 3249 3209 608 239 39 13 chr3 207488702 207488857 -20035721 - MIR SINE MIR -100 162 4 213 286 41 0 chr3 207489025 207489123 -20035455 + (TA)n Simple_repeat Simple_repeat 1 102 0 1763 170 3 45 chr3 207489634 207489945 -20034633 + AluSx SINE Alu 1 298 -14 5373 201 26 20 chr3 207490492 207492290 -20032288 - L1 LINE L1 -3630 3537 1731 1691 153 35 28 chr3 207492640 207492961 -20031617 - AluJb SINE Alu 0 323 1 648 331 38 28 chr3 207493510 207493903 -20030675 - ERVL LTR ERVL -384 5380 4984 41 0 0 0 chr3 207494081 207494122 -20030456 + AT_rich Low_complexity Low_complexity 1 41 0 2629 152 13 4 chr3 207494239 207494706 -20029872 - L1MA4 LINE L1 -14 6286 5816 234 184 26 26 chr3 207494750 207494864 -20029714 + (TA)n Simple_repeat Simple_repeat 1 114 0 538 100 0 0 chr3 207494867 207494947 -20029631 - L1PA5 LINE L1 0 6154 6075 276 135 0 0 chr3 207494955 207495008 -20029570 - L1MA4 LINE L1 -406 5777 5725 27 0 0 0 chr3 207495008 207495035 -20029543 + AT_rich Low_complexity Low_complexity 1 27 0 334 135 157 56 chr3 207495289 207495378 -20029200 + L2 LINE L2 3193 3290 -23 183 80 0 0 chr3 207495387 207495412 -20029166 + (TGAA)n Simple_repeat Simple_repeat 1 25 0 323 302 9 38 chr3 207495503 207495609 -20028969 + L2 LINE L2 3196 3298 -15 478 309 32 72 chr3 207497889 207498167 -20026411 + L3b LINE CR1 1306 1572 -11 21 0 0 0 chr3 207500432 207500453 -20024125 + AT_rich Low_complexity Low_complexity 1 21 0 2151 120 0 3 chr3 207500462 207500771 -20023807 + AluSx SINE Alu 1 308 -4 1156 145 0 0 chr3 207500771 207500943 -20023635 + AluSg/x SINE Alu 134 305 -7 263 335 72 36 chr3 207501609 207501776 -20022802 + MIR SINE MIR 89 261 -1 27 29 0 0 chr3 207503839 207503873 -20020705 + AT_rich Low_complexity Low_complexity 1 34 0 465 313 68 11 chr3 207504071 207504247 -20020331 + MIR3 SINE MIR 1 186 -22 214 280 0 0 chr3 207504514 207504564 -20020014 + MIR3 SINE MIR 142 191 -17 305 138 0 17 chr3 207507271 207507329 -20017249 + (TA)n Simple_repeat Simple_repeat 1 57 0 3199 57 2 0 chr3 207507653 207508057 -20016521 + L1PA8 LINE L1 5768 6172 0 2111 106 3 13 chr3 207508320 207508621 -20015957 - AluSp SINE Alu -15 298 1 41 0 0 0 chr3 207509262 207509303 -20015275 + AT_rich Low_complexity Low_complexity 1 41 0 235 269 221 39 chr3 207509422 207509526 -20015052 - L2 LINE L2 -11 3261 3139 2348 90 3 0 chr3 207510652 207510951 -20013627 - AluSq SINE Alu -13 300 1 192 366 91 41 chr3 207511131 207511614 -20012964 + L2 LINE L2 2266 2772 -542 858 222 91 52 chr3 207511628 207511858 -20012720 - MIR SINE MIR -22 240 2 256 359 43 51 chr3 207511893 207512127 -20012451 + L2 LINE L2 2809 3040 -232 302 261 87 56 chr3 207512531 207512726 -20011852 - L2 LINE L2 0 3313 3113 231 354 116 44 chr3 207512823 207513004 -20011574 - L2 LINE L2 -377 2937 2744 1405 103 0 9 chr3 207513463 207513686 -20010892 + L1MA6 LINE L1 6079 6299 -1 260 238 176 77 chr3 207515060 207515383 -20009195 - HAL1b LINE L1 -2 1346 992 1961 240 103 67 chr3 207515486 207516425 -20008153 + L1M4 LINE L1 2192 3173 -2973 21 0 0 0 chr3 207516732 207516753 -20007825 + AT_rich Low_complexity Low_complexity 1 21 0 2229 254 70 32 chr3 207517099 207518133 -20006445 + L1M4 LINE L1 3127 4199 -1947 3334 94 13 0 chr3 207518512 207518978 -20005600 + L1PA10 LINE L1 5686 6157 -11 3093 214 34 17 chr3 207519385 207520215 -20004363 - L1M4c LINE L1 -4518 1785 824 2517 117 3 0 chr3 207520213 207520556 -20004022 + THE1-int LTR MaLR 624 967 -613 * 28 48 0 0 chr3 207522114 207522156 -20002422 + AT_rich Low_complexity Low_complexity 1 42 0 300 347 65 0 chr3 207522356 207522572 -20002006 - HAL1 LINE L1 -747 1760 1531 290 266 6 89 chr3 207522674 207522832 -20001746 - L1MEd LINE L1 -4892 1227 1083 263 286 26 0 chr3 207522833 207522910 -20001668 + CT-rich Low_complexity Low_complexity 2 80 0 23 0 0 0 chr3 207523009 207523032 -20001546 + AT_rich Low_complexity Low_complexity 1 23 0 829 292 71 17 chr3 207573230 207573693 -19950885 - L1ME4a LINE L1 -122 5999 5512 246 155 35 35 chr3 207573872 207573930 -19950648 + CT-rich Low_complexity Low_complexity 3 60 0 261 0 0 0 chr3 207574045 207574074 -19950504 + (TC)n Simple_repeat Simple_repeat 2 30 0 1783 159 0 11 chr3 207574089 207574372 -19950206 - AluJo SINE Alu -32 280 1 2039 119 29 32 chr3 207574492 207574804 -19949774 - AluSx SINE Alu 0 312 2 1811 149 14 76 chr3 207574811 207575056 -19949522 - LTR25-int LTR ERV1 -3527 3469 3251 2211 86 0 0 chr3 207575056 207575335 -19949243 - AluSc SINE Alu -30 279 1 1811 149 14 76 chr3 207575335 207575445 -19949133 - LTR25-int LTR ERV1 -3745 3251 3136 309 274 62 56 chr3 207575609 207575788 -19948790 + MIR3 SINE MIR 18 197 -11 298 329 112 19 chr3 207575902 207576063 -19948515 - MIR SINE MIR -21 241 66 2136 110 0 10 chr3 207576070 207576378 -19948200 + AluY SINE Alu 1 305 -6 1575 71 9 5 chr3 207576378 207576583 -19947995 + L1PA7 LINE L1 5824 6029 -125 180 0 0 0 chr3 207577188 207577208 -19947370 + (T)n Simple_repeat Simple_repeat 1 20 0 667 300 122 42 chr3 207578109 207578585 -19945993 - L3 LINE CR1 -20 1557 1044 201 178 0 0 chr3 207579052 207579097 -19945481 + (CAGGG)n Simple_repeat Simple_repeat 2 46 0 253 237 34 0 chr3 207579217 207579276 -19945302 + MIR SINE MIR 58 118 -90 255 295 19 29 chr3 207579327 207579432 -19945146 - MIR SINE MIR -35 227 124 245 312 46 23 chr3 207579670 207579843 -19944735 + L1MEc LINE L1 1565 1741 -4655 332 303 232 10 chr3 207580310 207580508 -19944070 + L1MEc LINE L1 2180 2421 -3794 1036 167 0 6 chr3 207580512 207580686 -19943892 + AluJb SINE Alu 118 290 -22 274 260 273 0 chr3 207581096 207581275 -19943303 + L2 LINE L2 2794 3012 -301 396 234 109 31 chr3 207581279 207581407 -19943171 + L2 LINE L2 3166 3303 -10 34 55 0 0 chr3 207582637 207582692 -19941886 + AT_rich Low_complexity Low_complexity 1 55 0 354 230 95 56 chr3 207582980 207583106 -19941472 - L2 LINE L2 -2 3311 3181 6036 148 17 8 chr3 207583853 207585356 -19939222 - L1PB1 LINE L1 -1 6150 4640 1905 125 10 3 chr3 207685740 207686036 -19838542 + AluSx SINE Alu 1 298 -14 251 211 79 53 chr3 207686087 207686201 -19838377 - MER46C DNA MER2_type -221 117 1 1620 176 3 20 chr3 207686242 207686548 -19838030 + AluJo SINE Alu 1 301 -11 458 321 64 16 chr3 207686597 207686784 -19837794 - MIR SINE MIR -2 260 65 183 352 102 9 chr3 207686787 207686895 -19837683 + MIR SINE MIR 72 189 -73 192 77 0 0 chr3 207687265 207687291 -19837287 + (T)n Simple_repeat Simple_repeat 1 26 0 282 106 0 0 chr3 207688359 207688406 -19836172 + (TCCA)n Simple_repeat Simple_repeat 1 47 0 306 388 10 0 chr3 207688808 207688911 -19835667 + T-rich Low_complexity Low_complexity 1 104 0 2106 123 0 0 chr3 207689052 207689344 -19835234 + AluSx SINE Alu 10 301 -11 22 0 0 0 chr3 207689706 207689728 -19834850 + AT_rich Low_complexity Low_complexity 1 22 0 185 111 56 0 chr3 207690153 207690189 -19834389 + L2 LINE L2 3021 3058 -255 256 288 0 25 chr3 207690207 207690287 -19834291 + MER2 DNA MER2_type 268 345 0 186 257 101 9 chr3 207690597 207690706 -19833872 + L2 LINE L2 2941 3059 -213 387 258 50 75 chr3 207691602 207691761 -19832817 + L2 LINE L2 3159 3313 0 203 347 11 11 chr3 207691887 207691982 -19832596 - MIR SINE MIR -72 136 42 1555 239 49 12 chr3 207691999 207692430 -19832148 - MLT1C LTR MaLR -7 460 18 260 305 0 95 chr3 207694166 207694356 -19830222 - LTR33A LTR ERVL -350 173 2 198 389 7 22 chr3 207694449 207694588 -19829990 + L2 LINE L2 2566 2702 -612 219 322 56 0 chr3 207694754 207694844 -19829734 + L2 LINE L2 2937 3031 -241 298 329 88 37 chr3 207695023 207695239 -19829339 + MIR SINE MIR 7 233 -29 336 118 151 172 chr3 207695375 207695561 -19829017 - L1MC4 LINE L1 0 8042 7861 2072 125 0 28 chr3 207696044 207696365 -19828213 - AluSx SINE Alu 0 312 1 1211 158 5 36 chr3 207696391 207696612 -19827966 - AluSq SINE Alu -95 218 5 206 156 0 0 chr3 207696638 207696670 -19827908 - MIR SINE MIR -24 238 207 3402 183 32 10 chr3 207697690 207698490 -19826088 - L1 LINE L1 -970 5176 4359 1905 91 87 0 chr3 207699073 207699348 -19825230 + AluSx SINE Alu 1 299 -13 24 0 0 0 chr3 207699706 207699730 -19824848 + AT_rich Low_complexity Low_complexity 1 24 0 23 0 0 0 chr3 207699730 207699753 -19824825 + GC_rich Low_complexity Low_complexity 1 23 0 23 0 0 0 chr3 207699793 207699816 -19824762 + GC_rich Low_complexity Low_complexity 1 23 0 26 64 0 0 chr3 207699986 207700033 -19824545 + AT_rich Low_complexity Low_complexity 1 47 0 1759 181 0 0 chr3 207700037 207700308 -19824270 + AluSx SINE Alu 5 275 -37 459 80 80 0 chr3 207700315 207700427 -19824151 + (TA)n Simple_repeat Simple_repeat 2 122 0 387 317 7 14 chr3 207701912 207702054 -19822524 + Tigger8 DNA MER2_type 287 427 -239 965 212 22 31 chr3 207702526 207702752 -19821826 - MER58A DNA MER1_type 0 224 1 1684 168 25 0 chr3 207703669 207703795 -19820783 + AluJb SINE Alu 6 127 -185 2069 89 34 17 chr3 207703795 207704088 -19820490 + AluSq SINE Alu 1 298 -15 1684 168 25 0 chr3 207704088 207704246 -19820332 + AluJb SINE Alu 127 297 -15 14940 119 59 42 chr3 207704970 207705381 -19819197 + Tigger4(Zombi) DNA MER2_type 2 405 -2326 2100 117 0 0 chr3 207705381 207705664 -19818914 - AluSx SINE Alu -27 285 3 14940 119 59 42 chr3 207705664 207707938 -19816640 + Tigger4(Zombi) DNA MER2_type 405 2731 0 7388 39 4 3 chr3 207708087 207709737 -19814841 - L1PA5 LINE L1 -4 6150 4501 908 57 0 0 chr3 207709739 207709861 -19814717 + L1PA5 LINE L1 4380 4501 -1645 1838 187 63 53 chr3 207709890 207710585 -19813993 - L1MB7 LINE L1 -66 6118 5432 1171 206 137 8 chr3 207710585 207710847 -19813731 - AluJo SINE Alu -6 296 1 1838 187 63 53 chr3 207710847 207710913 -19813665 - L1MB7 LINE L1 -752 5432 5368 2389 80 0 26 chr3 207710913 207711225 -19813353 - AluY SINE Alu -7 304 1 1838 187 63 53 chr3 207711225 207711298 -19813280 - L1MB7 LINE L1 -816 5368 5099 388 241 72 30 chr3 207712678 207712844 -19811734 - L1ME3A LINE L1 -11 6159 5987 1619 165 20 26 chr3 207712933 207713236 -19811342 - AluJo SINE Alu -11 301 1 2112 119 0 7 chr3 207713276 207713569 -19811009 + AluSx SINE Alu 1 291 -21 1689 99 116 83 chr3 207713598 207713742 -19810836 - AluSx SINE Alu 0 312 174 2287 93 0 20 chr3 207713742 207714044 -19810534 - AluSc SINE Alu -13 296 1 1689 99 116 83 chr3 207714044 207714201 -19810377 - AluSx SINE Alu -138 174 1 180 111 0 0 chr3 207715148 207715175 -19809403 + (TTCA)n Simple_repeat Simple_repeat 3 29 0 25 65 0 0 chr3 207715456 207715502 -19809076 + AT_rich Low_complexity Low_complexity 1 46 0 761 215 65 5 chr3 207719024 207719224 -19805354 + LTR37A LTR ERV1 150 361 -65 273 194 113 0 chr3 207719302 207719364 -19805214 + MER5A DNA MER1_type 11 79 -110 724 226 21 26 chr3 207719833 207719873 -19804705 + MER5A DNA MER1_type 1 40 -149 1798 171 31 0 chr3 207719873 207720160 -19804418 - AluJb SINE Alu -16 296 1 724 226 21 26 chr3 207720160 207720309 -19804269 + MER5A DNA MER1_type 40 189 0 2846 3 0 0 chr3 207720421 207720727 -19803851 - AluY SINE Alu -5 306 1 288 257 9 28 chr3 207721346 207721455 -19803123 - L1MC5 LINE L1 -46 7915 7809 21 0 0 0 chr3 207721494 207721515 -19803063 + AT_rich Low_complexity Low_complexity 1 21 0 634 176 0 24 chr3 207721640 207721765 -19802813 + FLAM_C SINE Alu 1 122 -11 1733 167 27 14 chr3 207721781 207722074 -19802504 + AluJb SINE Alu 1 297 -15 25 0 0 0 chr3 207723070 207723095 -19801483 + AT_rich Low_complexity Low_complexity 1 25 0 2120 105 18 0 chr3 207723756 207724041 -19800537 - AluSg1 SINE Alu -19 290 1 2161 114 0 26 chr3 207724245 207724551 -19800027 + AluSx SINE Alu 1 298 -14 2246 100 0 13 chr3 207725214 207725515 -19799063 - AluSx SINE Alu -15 297 1 24 0 0 0 chr3 207727452 207727476 -19797102 + AT_rich Low_complexity Low_complexity 1 24 0 1284 261 141 23 chr3 207728590 207729372 -19795206 + HAL1 LINE L1 94 967 -1540 641 221 91 86 chr3 207729390 207729523 -19795055 + HAL1 LINE L1 1060 1191 -1316 2319 77 0 39 chr3 207729523 207729872 -19794706 + AluSx SINE Alu 1 312 0 641 221 91 86 chr3 207729872 207730077 -19794501 + HAL1 LINE L1 1191 1400 -1107 481 275 87 38 chr3 207730078 207730423 -19794155 + HAL1 LINE L1 1971 2332 -175 371 222 175 0 chr3 207730423 207730549 -19794029 + FLAM_A SINE Alu 1 131 -2 248 307 30 40 chr3 207731495 207731596 -19792982 + MIR SINE MIR 48 147 -115 427 143 10 71 chr3 207731781 207731879 -19792699 - MER46C DNA MER2_type -1 337 246 277 311 28 0 chr3 207732421 207732527 -19792051 - HAL1b LINE L1 -841 507 399 2149 133 0 7 chr3 207732626 207732927 -19791651 - AluSx SINE Alu -13 299 1 2429 233 31 65 chr3 207733033 207733190 -19791388 + L1MEc LINE L1 38 199 -6197 2060 107 11 0 chr3 207733190 207733496 -19791082 + AluSx SINE Alu 1 309 0 2429 233 31 65 chr3 207733496 207734508 -19790070 + L1MEc LINE L1 199 1289 -5107 2277 111 0 13 chr3 207734521 207734837 -19789741 + AluSx SINE Alu 1 312 0 1428 129 118 43 chr3 207734877 207735156 -19789422 + AluJb SINE Alu 1 300 -12 241 274 0 12 chr3 207735156 207735240 -19789338 + L1MEc LINE L1 3074 3156 -3059 2280 93 3 7 chr3 207735241 207735542 -19789036 + AluSp SINE Alu 1 300 -13 2411 94 0 0 chr3 207735542 207735851 -19788727 + AluSc SINE Alu 1 309 0 1963 103 69 17 chr3 207735891 207736241 -19788337 + THE1C LTR MaLR 8 375 0 253 221 87 10 chr3 207736243 207736347 -19788231 + L1MEc LINE L1 3176 3287 -2928 183 42 0 0 chr3 207736363 207736387 -19788191 + (TAGA)n Simple_repeat Simple_repeat 3 26 0 1493 216 10 31 chr3 207736393 207736777 -19787801 - MLT1B LTR MaLR -9 381 6 335 266 125 5 chr3 207736794 207736986 -19787592 + L1MEc LINE L1 3327 3541 -2674 300 91 109 0 chr3 207736991 207737046 -19787532 + L1MA9 LINE L1 6243 6303 -9 21 0 0 0 chr3 207737326 207737347 -19787231 + AT_rich Low_complexity Low_complexity 1 21 0 349 221 74 13 chr3 207737500 207737649 -19786929 + L1MEc LINE L1 3915 4072 -2143 1763 141 7 44 chr3 207738197 207738494 -19786084 + AluJo SINE Alu 1 286 -26 21 0 0 0 chr3 207738494 207738515 -19786063 + AT_rich Low_complexity Low_complexity 1 21 0 462 317 21 31 chr3 207738543 207738733 -19785845 - MIR SINE MIR -62 146 6 2080 137 13 0 chr3 207738911 207739218 -19785360 + AluJb SINE Alu 2 312 0 196 337 53 32 chr3 207739969 207740064 -19784514 - L2 LINE L2 -5 3267 3171 305 128 0 0 chr3 207740157 207740204 -19784374 + MER66A LTR ERV1 291 337 -141 41 21 0 0 chr3 207740204 207740252 -19784326 + AT_rich Low_complexity Low_complexity 1 48 0 21 0 0 0 chr3 207741134 207741155 -19783423 + AT_rich Low_complexity Low_complexity 1 21 0 1797 143 71 10 chr3 207743405 207743699 -19780879 - AluSx SINE Alu 0 312 1 2412 102 0 6 chr3 207744198 207744513 -19780065 + AluSq SINE Alu 1 313 0 228 167 0 0 chr3 207746099 207746147 -19778431 + (TA)n Simple_repeat Simple_repeat 1 48 0 1941 138 7 36 chr3 207746148 207746452 -19778126 - AluSx SINE Alu -17 295 1 213 39 0 0 chr3 207746458 207746484 -19778094 + (TA)n Simple_repeat Simple_repeat 2 27 0 1232 119 83 10 chr3 207746484 207746677 -19777901 - AluSg/x SINE Alu -22 290 84 897 175 87 48 chr3 207747063 207747292 -19777286 - L1MB7 LINE L1 -16 6168 5931 1661 233 8 16 chr3 207747666 207748043 -19776535 + Charlie8 DNA MER1_type 1449 1822 -595 298 174 232 0 chr3 207748078 207748147 -19776431 - L2 LINE L2 -34 3279 3195 464 258 85 106 chr3 207748166 207748357 -19776221 + Charlie8 DNA MER1_type 1847 2040 -377 938 138 0 0 chr3 207748357 207748487 -19776091 + FLAM_C SINE Alu 1 130 -3 464 258 85 106 chr3 207748487 207748788 -19775790 + Charlie8 DNA MER1_type 2040 2329 -88 2336 80 3 0 chr3 207748815 207749103 -19775475 - AluY SINE Alu -22 289 1 249 292 58 17 chr3 207749401 207749514 -19775064 - MIR SINE MIR -48 214 94 2087 95 16 33 chr3 207749514 207749819 -19774759 + AluSc SINE Alu 1 300 -9 228 257 150 64 chr3 207749899 207750039 -19774539 - L2 LINE L2 -309 2963 2812 493 251 134 35 chr3 207750086 207750257 -19774321 + MIR SINE MIR 16 203 -59 1979 115 10 17 chr3 207750625 207750920 -19773658 - AluJo SINE Alu -19 293 1 2291 102 0 0 chr3 207751484 207751779 -19772799 - AluSx SINE Alu -13 299 5 1169 274 164 24 chr3 207752565 207753335 -19771243 + L2 LINE L2 2301 3205 -108 2104 148 0 0 chr3 207753335 207753640 -19770938 + AluSx SINE Alu 1 305 -7 1169 274 164 24 chr3 207753640 207753709 -19770869 + L2 LINE L2 3205 3263 -50 186 103 0 0 chr3 207754680 207754709 -19769869 + (TTA)n Simple_repeat Simple_repeat 2 30 0 1460 233 83 13 chr3 207755091 207755486 -19769092 + LTR40c LTR ERVL 35 457 -8 662 323 52 46 chr3 207755562 207756061 -19768517 + L2 LINE L2 998 1499 -1815 408 20 0 0 chr3 207756080 207756129 -19768449 + (CAGA)n Simple_repeat Simple_repeat 2 50 0 1491 169 37 22 chr3 207756129 207756402 -19768176 - AluJb SINE Alu -35 277 1 1666 186 0 14 chr3 207756479 207756769 -19767809 - AluJo SINE Alu -26 286 1 638 264 115 56 chr3 207756905 207757287 -19767291 - L1MC5 LINE L1 -99 7862 7516 2143 120 3 7 chr3 207757287 207757586 -19766992 + AluSx SINE Alu 1 298 -14 638 264 115 56 chr3 207757586 207757878 -19766700 - L1MC5 LINE L1 -445 7516 7243 242 260 87 40 chr3 207757990 207758140 -19766438 + L2 LINE L2 1698 1854 -1460 805 179 6 64 chr3 207759471 207759644 -19764934 + FRAM SINE Alu 1 162 -14 817 271 94 35 chr3 207759697 207760421 -19764157 + L1ME3A LINE L1 5171 5951 -219 2001 157 0 6 chr3 207760451 207760763 -19763815 + AluSx SINE Alu 1 310 -2 887 164 19 13 chr3 207760787 207760946 -19763632 + FRAM SINE Alu 5 164 -12 211 146 24 0 chr3 207761047 207761088 -19763490 + A-rich Low_complexity Low_complexity 4 45 0 339 299 178 0 chr3 207761088 207761195 -19763383 - MIR SINE MIR -133 129 4 282 306 76 25 chr3 207761240 207761397 -19763181 + L2 LINE L2 1979 2143 -1171 189 0 0 0 chr3 207761483 207761504 -19763074 + (A)n Simple_repeat Simple_repeat 1 21 0 1979 105 33 7 chr3 207762127 207762442 -19762136 + AluSp SINE Alu 1 322 0 331 271 221 0 chr3 207762985 207763107 -19761471 - L2 LINE L2 -1 3271 3123 828 205 48 138 chr3 207763111 207763316 -19761262 - MER46C DNA MER2_type 0 338 179 1913 113 11 4 chr3 207763316 207763591 -19760987 + AluSx SINE Alu 22 298 -14 828 205 48 138 chr3 207763591 207763756 -19760822 - MER46C DNA MER2_type -159 179 1 1816 166 3 19 chr3 207763797 207764104 -19760474 + AluJo SINE Alu 1 302 -10 596 240 113 27 chr3 207764160 207764381 -19760197 - MIR SINE MIR -10 252 13 349 271 103 9 chr3 207764345 207764452 -19760126 + MIR SINE MIR 75 191 -71 * 181 188 43 87 chr3 207764636 207764705 -19759873 - L3b LINE CR1 -230 1353 1288 1032 203 28 0 chr3 207765017 207765199 -19759379 + MER5A DNA MER1_type 3 189 0 1986 161 110 59 chr3 207765361 207765940 -19758638 + MER4A LTR ERV1 1 465 0 213 65 0 0 chr3 207766885 207766916 -19757662 + (GA)n Simple_repeat Simple_repeat 2 32 0 197 265 0 0 chr3 207767092 207767141 -19757437 - L2 LINE L2 -1 3312 3264 1769 153 64 16 chr3 207767197 207767464 -19757114 - MER7A DNA MER2_type -2692 346 62 2109 110 0 57 chr3 207767464 207767781 -19756797 + AluSx SINE Alu 1 299 -13 1769 153 64 16 chr3 207767781 207767827 -19756751 - MER7A DNA MER2_type -2976 62 20 2390 69 3 7 chr3 207767828 207768119 -19756459 - AluSq SINE Alu -23 290 1 1244 196 40 73 chr3 207768640 207768941 -19755637 - AluJo SINE Alu -10 292 2 255 245 20 92 chr3 207769001 207769099 -19755479 + MARNA DNA Mariner 287 377 -209 2145 112 11 0 chr3 207769269 207769555 -19755023 + AluSx SINE Alu 1 289 -23 939 191 0 0 chr3 207770582 207770729 -19753849 + AluJb SINE Alu 141 287 -25 22 0 0 0 chr3 207771043 207771065 -19753513 + AT_rich Low_complexity Low_complexity 1 22 0 2071 150 3 3 chr3 207771291 207771598 -19752980 - AluJb SINE Alu -5 307 1 263 216 149 0 chr3 207771664 207771738 -19752840 + L1ME LINE L1 5735 5819 -302 251 329 0 0 chr3 207772231 207772304 -19752274 + MIR SINE MIR 3 75 -187 877 278 151 19 chr3 207772890 207773321 -19751257 - L2 LINE L2 0 3313 2826 180 0 0 0 chr3 207773359 207773379 -19751199 + (A)n Simple_repeat Simple_repeat 1 20 0 843 178 102 25 chr3 207773385 207773542 -19751036 - AluJb SINE Alu -22 290 122 730 215 97 113 chr3 207773555 207773945 -19750633 - L2 LINE L2 -572 2742 2359 432 328 150 20 chr3 207773945 207774192 -19750386 - L2 LINE L2 -1279 2035 1757 304 47 47 0 chr3 207774234 207774277 -19750301 - AluY SINE Alu -257 45 1 951 257 163 13 chr3 207774279 207774757 -19749821 - L1MC4a LINE L1 -1285 6523 5974 897 137 0 34 chr3 207774809 207774955 -19749623 + FLAM_C SINE Alu 1 141 -2 295 324 117 7 chr3 207774955 207775100 -19749478 - L2 LINE L2 -1565 1749 1589 381 307 39 20 chr3 207775509 207775662 -19748916 + MIR SINE MIR 3 158 -104 203 384 0 0 chr3 207777824 207777910 -19746668 + MIR3 SINE MIR 117 202 -6 359 298 149 0 chr3 207777948 207778136 -19746442 + MIR SINE MIR 47 262 0 354 264 161 0 chr3 207778947 207779102 -19745476 - MIR SINE MIR -20 242 63 1946 103 72 3 chr3 207779143 207779434 -19745144 - AluSx SINE Alu -1 311 1 212 361 84 8 chr3 207780256 207780375 -19744203 + L2 LINE L2 3186 3313 0 311 373 37 15 chr3 207781354 207781488 -19743090 + MIR3 SINE MIR 20 156 -52 238 309 65 24 chr3 207781498 207781621 -19742957 - MER117 DNA MER1_type -6 191 64 1770 219 144 7 chr3 207781691 207782120 -19742458 - MLT1G1 LTR MaLR -6 589 102 1084 149 104 10 chr3 207782120 207782321 -19742257 - AluSg/x SINE Alu -8 304 85 266 246 16 0 chr3 207782333 207782394 -19742184 - MLT1G1 LTR MaLR -533 62 1 1065 223 135 56 chr3 207782584 207782939 -19741639 - L1ME1 LINE L1 -25 6141 5759 2417 90 0 0 chr3 207783914 207784215 -19740363 - AluSg SINE Alu -9 301 1 1395 178 96 10 chr3 207784539 207784853 -19739725 + MER2 DNA MER2_type 4 344 -1 390 271 56 26 chr3 207785008 207785187 -19739391 - MIR SINE MIR -51 211 30 2276 104 3 16 chr3 207785413 207785730 -19738848 + AluSq SINE Alu 1 313 0 848 160 8 15 chr3 207786680 207786811 -19737767 - FLAM_A SINE Alu 0 133 4 30 27 0 0 chr3 207786819 207786856 -19737722 + AT_rich Low_complexity Low_complexity 1 37 0 21 0 0 0 chr3 207787236 207787257 -19737321 + AT_rich Low_complexity Low_complexity 1 21 0 2337 42 0 0 chr3 207787263 207787526 -19737052 + AluY SINE Alu 36 298 -13 258 136 0 0 chr3 207788163 207788207 -19736371 + (TG)n Simple_repeat Simple_repeat 1 44 0 349 350 15 7 chr3 207788421 207788558 -19736020 + MIR SINE MIR 3 140 -122 2193 114 7 0 chr3 207788569 207788859 -19735719 + AluSx SINE Alu 1 292 -20 366 258 189 8 chr3 207789476 207789608 -19734970 - MIR SINE MIR -22 240 85 736 216 31 6 chr3 207789942 207790104 -19734474 + L1MA9 LINE L1 6096 6261 -51 675 48 0 0 chr3 207790104 207790188 -19734390 + MER4B LTR ERV1 1 84 -526 785 204 8 0 chr3 207790190 207790322 -19734256 + AluJo SINE Alu 2 134 -178 1746 62 0 27 chr3 207791334 207791558 -19733020 + AluY SINE Alu 1 218 -93 800 133 0 44 chr3 207791806 207791971 -19732607 - FLAM_C SINE Alu 0 163 5 2258 125 0 0 chr3 207792020 207792323 -19732255 - AluSx SINE Alu -9 303 1 1467 187 14 7 chr3 207793039 207793323 -19731255 - AluJo SINE Alu -25 287 2 339 279 87 19 chr3 207793454 207793558 -19731020 - L2 LINE L2 -14 3258 3148 186 157 0 98 chr3 207793690 207793741 -19730837 + L2 LINE L2 3265 3310 -3 21 0 0 0 chr3 207794042 207794063 -19730515 + AT_rich Low_complexity Low_complexity 1 21 0 1031 153 0 0 chr3 207794066 207794223 -19730355 + FRAM SINE Alu 3 159 -17 2356 100 3 0 chr3 207794226 207794537 -19730041 + AluSp SINE Alu 1 312 -1 3995 150 75 31 chr3 207794537 207795332 -19729246 + MER4D LTR ERV1 72 659 -5 391 52 17 0 chr3 207795332 207795390 -19729188 + L1MA9 LINE L1 6254 6312 0 6977 116 47 60 chr3 207795942 207796531 -19728047 + Tigger3b DNA MER2_type 1 596 -2432 42 20 0 0 chr3 207796531 207796580 -19727998 + AT_rich Low_complexity Low_complexity 1 49 0 1516 117 14 0 chr3 207796570 207796784 -19727794 - AluY SINE Alu -23 288 72 6977 116 47 60 chr3 207796580 207796910 -19727668 + Tigger3b DNA MER2_type 596 735 -2293 2457 70 0 0 chr3 207796910 207797209 -19727369 + AluY SINE Alu 1 299 -12 6977 116 47 60 chr3 207797209 207797700 -19726878 + Tigger3b DNA MER2_type 735 1231 0 270 239 134 0 chr3 207797868 207797935 -19726643 + L1ME4a LINE L1 5551 5626 -495 391 292 141 50 chr3 207797940 207798344 -19726234 + L1ME4a LINE L1 5665 6105 -16 183 80 0 0 chr3 207798345 207798370 -19726208 + (TTTCC)n Simple_repeat Simple_repeat 1 25 0 1780 180 26 7 chr3 207798370 207798676 -19725902 - AluJb SINE Alu 0 312 1 2357 77 0 10 chr3 207798894 207799194 -19725384 + AluY SINE Alu 1 297 -14 589 141 40 0 chr3 207799302 207799401 -19725177 - L1MD2 LINE L1 0 6359 6257 889 232 0 6 chr3 207799423 207799634 -19724944 - AluJo SINE Alu 0 325 116 804 214 7 0 chr3 207800067 207800212 -19724366 + FRAM SINE Alu 12 157 -19 2115 123 3 0 chr3 207800243 207800536 -19724042 - AluSx SINE Alu -18 294 1 895 228 47 105 chr3 207800702 207800760 -19723818 - MSTC LTR MaLR 0 428 368 898 228 0 12 chr3 207800760 207800927 -19723651 - FRAM SINE Alu 0 166 2 895 228 47 105 chr3 207800927 207801120 -19723458 - MSTC LTR MaLR -60 368 165 2050 119 10 16 chr3 207801120 207801431 -19723147 - AluSc SINE Alu 0 309 1 895 228 47 105 chr3 207801431 207801442 -19723136 - MSTC LTR MaLR -263 165 155 2251 105 0 3 chr3 207801442 207801784 -19722794 - AluSc SINE Alu 0 341 1 895 228 47 105 chr3 207801784 207801964 -19722614 - MSTC LTR MaLR -273 155 8 3794 222 36 155 chr3 207801964 207803604 -19720974 - MSTD-int LTR MaLR -3 1648 258 805 164 0 0 chr3 207803604 207803720 -19720858 + FLAM_C SINE Alu 3 118 -15 3794 222 36 155 chr3 207803720 207803951 -19720627 - MSTD-int LTR MaLR -1393 258 1 1982 222 23 5 chr3 207803953 207804340 -19720238 - MSTD LTR MaLR -2 394 1 277 42 21 21 chr3 207804523 207804571 -19720007 + (TTTTG)n Simple_repeat Simple_repeat 2 49 0 1061 185 10 35 chr3 207804579 207804720 -19719858 - AluJb SINE Alu -35 277 141 2979 104 41 2 chr3 207804720 207805132 -19719446 + MSTA LTR MaLR 1 428 0 1061 185 10 35 chr3 207805132 207805190 -19719388 - AluJb SINE Alu -171 141 83 1538 235 40 38 chr3 207805902 207806297 -19718281 + MSTD LTR MaLR 1 396 0 2690 29 3 3 chr3 207806854 207807163 -19717415 - AluY SINE Alu -2 309 1 1471 165 12 93 chr3 207807331 207807652 -19716926 - AluJo SINE Alu -17 295 1 27 62 0 0 chr3 207807869 207807917 -19716661 + AT_rich Low_complexity Low_complexity 1 48 0 1852 155 28 3 chr3 207807917 207808208 -19716370 - AluJb SINE Alu -14 298 1 24 67 0 0 chr3 207809340 207809385 -19715193 + AT_rich Low_complexity Low_complexity 1 45 0 241 250 15 29 chr3 207809980 207810048 -19714530 - MIR3 SINE MIR -3 205 139 615 206 41 0 chr3 207810096 207810242 -19714336 - LTR37B LTR ERV1 -4 464 313 2848 209 30 59 chr3 207810361 207810849 -19713729 - MER82 DNA MER2_type 0 653 152 261 0 0 0 chr3 207810849 207810878 -19713700 + (TG)n Simple_repeat Simple_repeat 2 30 0 2848 209 30 59 chr3 207810878 207811013 -19713565 - MER82 DNA MER2_type -501 152 49 2465 68 0 6 chr3 207811013 207811324 -19713254 - AluY SINE Alu -2 309 1 2848 209 30 59 chr3 207811324 207811372 -19713206 - MER82 DNA MER2_type -604 49 1 1941 133 11 0 chr3 207811671 207811975 -19712603 + AluSx SINE Alu 1 307 0 2040 109 4 0 chr3 207811982 207812257 -19712321 + AluSg1 SINE Alu 28 303 -6 5157 149 55 25 chr3 207813391 207813697 -19710881 + MER49 LTR ERV1 5 300 -623 207 0 0 0 chr3 207813697 207813720 -19710858 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 5157 149 55 25 chr3 207813720 207813781 -19710797 + MER49 LTR ERV1 300 358 -565 2153 122 3 3 chr3 207813781 207814077 -19710501 + AluSx SINE Alu 1 296 -16 5157 149 55 25 chr3 207814077 207814600 -19709978 + MER49 LTR ERV1 358 923 0 2057 145 6 3 chr3 207814715 207815026 -19709552 + AluJb SINE Alu 1 312 0 281 26 26 0 chr3 207815032 207815070 -19709508 + (TA)n Simple_repeat Simple_repeat 1 39 0 21 36 0 0 chr3 207815086 207815114 -19709464 + AT_rich Low_complexity Low_complexity 1 28 0 1544 172 8 26 chr3 207815394 207815662 -19708916 + AluJo SINE Alu 29 291 -21 262 348 0 9 chr3 207816060 207816172 -19708406 + L1MDa LINE L1 27 137 -6403 209 163 20 0 chr3 207816403 207816452 -19708126 + (TAGA)n Simple_repeat Simple_repeat 3 52 0 2247 184 126 24 chr3 207816462 207816923 -19707655 - MLT2B3 LTR ERVL -46 508 1 823 229 116 0 chr3 207816936 207817194 -19707384 + L1MDa LINE L1 1036 1323 -5217 21 36 0 0 chr3 207817247 207817275 -19707303 + AT_rich Low_complexity Low_complexity 1 28 0 630 308 103 28 chr3 207817481 207817868 -19706710 - MLT1J LTR MaLR 0 511 96 925 306 69 75 chr3 207817906 207818399 -19706179 + L1M2a LINE L1 4 493 -6675 2626 240 18 46 chr3 207818402 207819679 -19704899 + L1M2a LINE L1 1289 2525 -4573 337 167 17 0 chr3 207819815 207819875 -19704703 - LTR5 LTR ERVK -894 75 15 587 113 43 0 chr3 207820256 207820371 -19704207 + GA-rich Low_complexity Low_complexity 3 122 0 761 206 0 0 chr3 207820404 207820535 -19704043 + FLAM_A SINE Alu 1 131 -2 273 146 0 0 chr3 207820569 207820617 -19703961 + (GGAA)n Simple_repeat Simple_repeat 4 51 0 542 242 29 31 chr3 207820617 207820640 -19703938 + L1MDa LINE L1 1431 1453 -5088 2691 40 3 0 chr3 207820640 207820944 -19703634 + AluY SINE Alu 1 305 -6 542 242 29 31 chr3 207820944 207821117 -19703461 + L1MDa LINE L1 1453 2025 -4516 752 213 0 0 chr3 207821119 207821246 -19703332 + FLAM_A SINE Alu 1 127 -6 1324 211 4 14 chr3 207821246 207821565 -19703013 + AluSx SINE Alu 41 356 0 454 208 8 8 chr3 207821565 207821695 -19702883 + GA-rich Low_complexity Low_complexity 3 132 0 2304 252 54 25 chr3 207821697 207823011 -19701567 + L1M2 LINE L1 2709 4067 -3498 250 232 32 0 chr3 207823010 207823105 -19701473 - L1 LINE L1 -3007 3139 3042 * 2834 173 15 44 chr3 207823105 207824205 -19700373 + L1M2 LINE L1 6147 7210 -521 426 318 176 18 chr3 207824223 207824442 -19700136 - LTR16A LTR ERVL 0 450 267 2104 116 17 0 chr3 207824442 207824743 -19699835 - AluSg SINE Alu -4 306 1 426 318 176 18 chr3 207824743 207824768 -19699810 - LTR16A LTR ERVL -183 267 247 9484 61 4 2 chr3 207824768 207825161 -19699417 - L1PA7 LINE L1 0 6154 5763 2491 68 0 7 chr3 207825161 207825469 -19699109 - AluY SINE Alu -5 306 1 9484 61 4 2 chr3 207825469 207827028 -19697550 - L1PA7 LINE L1 -391 5763 4215 426 318 176 18 chr3 207827028 207827169 -19697409 - LTR16A LTR ERVL -203 247 3 859 275 147 19 chr3 207827174 207827309 -19697269 + L2 LINE L2 2136 2252 -1062 1731 147 6 86 chr3 207827309 207827635 -19696943 - AluSx SINE Alu -12 300 1 859 275 147 19 chr3 207827635 207827928 -19696650 + L2 LINE L2 2252 2619 -695 2338 104 3 0 chr3 207828234 207828543 -19696035 - AluSx SINE Alu -2 310 1 319 211 26 13 chr3 207828824 207828837 -19695741 + L1ME2 LINE L1 6078 6089 -75 1322 214 50 10 chr3 207828837 207829136 -19695442 - AluJo SINE Alu -1 311 1 319 211 26 13 chr3 207829136 207829198 -19695380 + L1ME2 LINE L1 6089 6154 -10 912 271 25 39 chr3 207831715 207831999 -19692579 + MLT1I LTR MaLR 130 409 0 1984 152 17 0 chr3 207832072 207832374 -19692204 + AluJb SINE Alu 2 308 -4 25 0 0 0 chr3 207832473 207832498 -19692080 + AT_rich Low_complexity Low_complexity 1 25 0 207 260 178 0 chr3 207832873 207832946 -19691632 + L2 LINE L2 3225 3310 -3 316 342 107 43 chr3 207832976 207833321 -19691257 + L2 LINE L2 2358 2724 -590 428 111 14 0 chr3 207833392 207833464 -19691114 + (GGAA)n Simple_repeat Simple_repeat 4 76 0 280 270 195 81 chr3 207833574 207833933 -19690645 + L2 LINE L2 2914 3313 0 238 369 68 9 chr3 207833924 207834146 -19690432 - L2 LINE L2 -784 2530 2296 * 811 152 0 55 chr3 207834152 207834297 -19690281 - FLAM_C SINE Alu -6 137 1 803 273 194 40 chr3 207834553 207834938 -19689640 + L1MC4a LINE L1 6093 6417 -1391 219 69 0 0 chr3 207834938 207834967 -19689611 + (TA)n Simple_repeat Simple_repeat 1 29 0 803 273 194 40 chr3 207834967 207835163 -19689415 + L1MC4a LINE L1 6417 6764 -1044 333 68 0 0 chr3 207835175 207835219 -19689359 + (CA)n Simple_repeat Simple_repeat 2 45 0 1698 140 7 48 chr3 207835846 207836138 -19688440 - AluJo SINE Alu -30 282 3 263 282 24 0 chr3 207836222 207836307 -19688271 + MER102b DNA MER1_type 252 338 -3 295 263 140 9 chr3 207837262 207837376 -19687202 + L2 LINE L2 3164 3292 -21 861 212 71 28 chr3 207837511 207837723 -19686855 + MIR SINE MIR 2 222 -40 645 207 59 41 chr3 207837857 207838026 -19686552 + MER3 DNA MER1_type 2 126 -83 237 178 0 0 chr3 207838789 207838834 -19685744 + (TG)n Simple_repeat Simple_repeat 1 45 0 1793 160 31 3 chr3 207839200 207839494 -19685084 - AluJb SINE Alu -10 302 1 320 200 31 0 chr3 207839514 207839579 -19684999 - HAL1 LINE L1 0 2507 2441 23 68 0 0 chr3 207839831 207839875 -19684703 + AT_rich Low_complexity Low_complexity 1 44 0 183 307 67 102 chr3 207839981 207840385 -19684193 - L2 LINE L2 0 3272 2883 1919 191 28 21 chr3 207840498 207840885 -19683693 + MLT1B LTR MaLR 1 390 0 638 197 8 0 chr3 207841193 207841315 -19683263 - MIR SINE MIR -17 245 123 1939 118 39 8 chr3 207841315 207841703 -19682875 - LTR7 LTR ERV1 0 450 1 3040 97 4 29 chr3 207841703 207842159 -19682419 - HERVH LTR ERV1 0 7713 7269 * 6649 115 15 1 chr3 207842141 207843079 -19681499 - HERVH LTR ERV1 -2693 5020 4070 3039 78 92 2 chr3 207843079 207843490 -19681088 + LTR7 LTR ERV1 1 448 -2 14480 113 16 27 chr3 207843493 207846278 -19678300 + HERVH LTR ERV1 1 2992 -4721 935 141 7 0 chr3 207846265 207846414 -19678164 + HERVH LTR ERV1 3141 3290 -4423 * 3454 115 0 6 chr3 207846404 207846909 -19677669 + HERVH LTR ERV1 3492 3993 -3720 2848 118 57 2 chr3 207846911 207847494 -19677084 + HERVH LTR ERV1 4488 5149 -2564 2415 103 37 42 chr3 207847495 207848091 -19676487 + HERVH LTR ERV1 5600 7713 0 2636 87 119 5 chr3 207848091 207848493 -19676085 + LTR7 LTR ERV1 1 448 -2 1378 137 19 8 chr3 207848493 207848827 -19675751 - HERVH LTR ERV1 -3552 4261 3806 * 2695 164 7 0 chr3 207848821 207849266 -19675312 - HERVH LTR ERV1 -4126 3587 3140 * 13946 151 17 35 chr3 207849245 207851969 -19672609 - HERVH LTR ERV1 -4718 2995 1 2155 90 33 8 chr3 207851969 207852359 -19672219 - LTR7 LTR ERV1 0 450 1 238 286 16 0 chr3 207852365 207852428 -19672150 - MIR SINE MIR -142 120 57 379 278 22 50 chr3 207853457 207853637 -19670941 - MIR SINE MIR 0 262 88 535 172 134 100 chr3 207853659 207853784 -19670794 - LTR37B LTR ERV1 0 468 349 423 56 0 0 chr3 207853784 207853838 -19670740 + (TG)n Simple_repeat Simple_repeat 2 55 0 535 172 134 100 chr3 207853838 207853940 -19670638 - LTR37B LTR ERV1 -119 349 228 2472 90 0 0 chr3 207853940 207854251 -19670327 + AluY SINE Alu 1 311 0 535 172 134 100 chr3 207854251 207854283 -19670295 - LTR37B LTR ERV1 -240 228 199 1689 177 99 6 chr3 207854447 207854781 -19669797 + MLT1A1 LTR MaLR 1 365 0 839 210 118 0 chr3 207854791 207854977 -19669601 + MER3 DNA MER1_type 1 208 -1 362 329 184 0 chr3 207855278 207855430 -19669148 - MER102b DNA MER1_type -159 182 3 2479 86 3 0 chr3 207855454 207855757 -19668821 + AluSp SINE Alu 1 304 -9 460 176 0 0 chr3 207855876 207855950 -19668628 + MLT1A1 LTR MaLR 286 359 -6 602 208 25 0 chr3 207856122 207856242 -19668336 + FLAM_C SINE Alu 3 125 -18 1562 173 64 14 chr3 207856279 207856562 -19668016 + AluJo SINE Alu 1 297 -15 21 0 0 0 chr3 207856657 207856678 -19667900 + AT_rich Low_complexity Low_complexity 1 21 0 596 168 0 0 chr3 207856687 207856782 -19667796 - FLAM_A SINE Alu -30 112 18 1673 171 30 33 chr3 207856918 207857222 -19667356 - AluJo SINE Alu -9 303 1 348 241 31 83 chr3 207858114 207858244 -19666334 - L1MC4 LINE L1 -1 8041 7927 198 71 0 0 chr3 207858244 207858272 -19666306 + (TCCA)n Simple_repeat Simple_repeat 4 31 0 348 241 31 83 chr3 207858272 207858369 -19666209 - L1MC4 LINE L1 -115 7927 7826 302 100 60 0 chr3 207858431 207858481 -19666097 - L1ME2 LINE L1 -27 6137 6085 2179 144 78 2 chr3 207858568 207858963 -19665615 - L1MC1 LINE L1 0 6333 5909 495 122 14 0 chr3 207858966 207859040 -19665538 - L1MC1 LINE L1 -349 5984 5910 514 192 43 47 chr3 207859046 207859215 -19665363 + ALR/Alpha Satellite centromeric 1 168 -33 3979 129 14 23 chr3 207859225 207859962 -19664616 - L1MC1 LINE L1 -436 5897 5169 363 254 8 46 chr3 207860020 207860150 -19664428 - L2 LINE L2 -86 3227 3103 801 235 146 56 chr3 207860168 207860614 -19663964 - L2 LINE L2 -613 2701 2216 439 276 175 21 chr3 207860617 207860903 -19663675 + LTR33 LTR ERVL 1 330 -191 534 258 81 30 chr3 207860910 207861108 -19663470 - L2 LINE L2 -1113 2201 1994 2104 115 14 0 chr3 207861120 207861416 -19663162 + AluSx SINE Alu 1 300 -12 2469 71 7 0 chr3 207861699 207861996 -19662582 - AluSx SINE Alu -13 299 1 27 29 0 0 chr3 207862635 207862669 -19661909 + AT_rich Low_complexity Low_complexity 1 34 0 593 200 28 44 chr3 207862897 207863077 -19661501 - MLT1K LTR MaLR 0 588 412 1095 40 0 0 chr3 207863444 207863604 -19660974 + L1PA3 LINE L1 6008 6167 0 784 209 12 91 chr3 207864310 207864377 -19660201 + MLT1C LTR MaLR 1 72 -318 2060 166 86 13 chr3 207864377 207864774 -19659804 - MSTA LTR MaLR -2 426 1 784 209 12 91 chr3 207864774 207864959 -19659619 + MLT1C LTR MaLR 72 233 -157 974 206 63 34 chr3 207864983 207865221 -19659357 + MLT1C LTR MaLR 223 467 0 1528 162 62 52 chr3 207865802 207866110 -19658468 + AluJo SINE Alu 1 311 -1 2071 92 42 7 chr3 207866706 207866990 -19657588 + AluSp SINE Alu 1 294 -19 2453 138 30 41 chr3 207867559 207867994 -19656584 - MSTB1 LTR MaLR 0 432 3 1815 186 7 0 chr3 207868175 207868471 -19656107 + AluJo SINE Alu 1 298 -14 612 208 41 15 chr3 207868471 207868774 -19655804 + GA-rich Low_complexity Low_complexity 1 310 0 1838 169 80 40 chr3 207868774 207869147 -19655431 - MSTB LTR MaLR -35 391 4 2356 93 14 37 chr3 207869207 207869411 -19655167 - L1MA4 LINE L1 -272 6028 5834 2427 87 3 3 chr3 207869411 207869710 -19654868 - AluSp SINE Alu -14 299 1 2356 93 14 37 chr3 207869710 207869860 -19654718 - L1MA4 LINE L1 -466 5834 5682 1029 171 22 149 chr3 207869861 207869954 -19654624 - MER82 DNA MER2_type -378 275 172 2505 111 52 38 chr3 207869954 207870048 -19654530 + MSTC LTR MaLR 1 92 -336 1784 174 17 0 chr3 207870048 207870341 -19654237 + AluJo SINE Alu 1 298 -14 2505 111 52 38 chr3 207870341 207870601 -19653977 + MSTC LTR MaLR 92 364 -64 2301 101 3 0 chr3 207870601 207870898 -19653680 + AluSx SINE Alu 3 300 -12 2505 111 52 38 chr3 207870898 207870964 -19653614 + MSTC LTR MaLR 364 428 0 1029 171 22 149 chr3 207870964 207871185 -19653393 - MER82 DNA MER2_type -481 172 1 1512 113 27 5 chr3 207871970 207872191 -19652387 + L1 LINE L1 13 238 -7327 * 19433 123 16 12 chr3 207872188 207873672 -19650906 + L1 LINE L1 809 2286 -5279 1873 139 41 30 chr3 207873672 207873967 -19650611 + AluJb SINE Alu 3 300 -12 19433 123 16 12 chr3 207873967 207875687 -19648891 + L1 LINE L1 2286 4028 -3537 4628 147 15 21 chr3 207875681 207876170 -19648408 + L1 LINE L1 5563 6046 -1519 * 2397 93 3 3 chr3 207876170 207876483 -19648095 + AluSp SINE Alu 1 313 0 4628 147 15 21 chr3 207876483 207876851 -19647727 + L1 LINE L1 6046 6415 -1150 532 152 0 54 chr3 207876955 207877225 -19647353 + AluJo SINE Alu 1 311 -1 367 308 0 8 chr3 207877618 207877751 -19646827 + MIR SINE MIR 120 251 -11 1743 138 3 7 chr3 207877759 207878042 -19646536 + L1P LINE L1 4694 4975 -1171 2260 87 7 10 chr3 207878186 207878496 -19646082 - AluY SINE Alu -2 309 1 1608 157 59 21 chr3 207878496 207878778 -19645800 - Tigger2 DNA MER2_type -2368 350 51 2050 148 0 16 chr3 207878778 207879095 -19645483 + AluSx SINE Alu 1 312 0 1608 157 59 21 chr3 207879095 207879149 -19645429 - Tigger2 DNA MER2_type -2667 51 1 246 62 0 0 chr3 207879722 207879754 -19644824 + (A)n Simple_repeat Simple_repeat 1 32 0 2579 71 0 0 chr3 207879794 207880104 -19644474 + AluY SINE Alu 1 310 -1 1186 270 78 42 chr3 207880666 207881240 -19643338 + L1MC4a LINE L1 5473 6067 -1741 24 0 0 0 chr3 207881289 207881313 -19643265 + AT_rich Low_complexity Low_complexity 1 24 0 1805 165 3 16 chr3 207881358 207881661 -19642917 - AluJb SINE Alu -13 299 1 2678 30 0 0 chr3 207881669 207881968 -19642610 - AluY SINE Alu -12 299 1 258 177 63 0 chr3 207882138 207882217 -19642361 + (TA)n Simple_repeat Simple_repeat 1 84 0 233 227 107 13 chr3 207882306 207882381 -19642197 + MIR SINE MIR 40 121 -141 2079 113 0 0 chr3 207884001 207884275 -19640303 + AluSx SINE Alu 39 312 0 209 292 56 11 chr3 207884857 207884946 -19639632 - L2 LINE L2 -659 2655 2563 2076 89 50 0 chr3 207885046 207885326 -19639252 - AluSg SINE Alu -16 294 1 21 0 0 0 chr3 207885328 207885349 -19639229 + AT_rich Low_complexity Low_complexity 1 21 0 210 214 0 67 chr3 207886222 207886311 -19638267 + C-rich Low_complexity Low_complexity 1 83 0 213 324 115 14 chr3 207886924 207887063 -19637515 + MIR SINE MIR 47 199 -63 445 265 0 0 chr3 207887074 207887176 -19637402 + MER5A DNA MER1_type 9 110 -79 266 203 29 29 chr3 207887854 207887923 -19636655 + HsTC2 DNA Tc2 1 69 -1829 553 155 0 0 chr3 207887949 207888033 -19636545 - AluJ/FLAM SINE Alu -226 86 3 364 267 42 0 chr3 207888033 207888153 -19636425 + MER104 DNA Tc2 56 180 0 1494 121 167 12 chr3 207888201 207888458 -19636120 + AluSg1 SINE Alu 1 297 -12 301 113 72 10 chr3 207888459 207888556 -19636022 + (TA)n Simple_repeat Simple_repeat 1 103 0 197 293 60 74 chr3 207889158 207889373 -19635205 - L2 LINE L2 -947 2367 2156 1611 145 43 43 chr3 207889497 207889704 -19634874 - MLT1B LTR MaLR 0 390 181 1933 126 0 7 chr3 207889704 207890018 -19634560 - AluSc SINE Alu 0 309 7 1611 145 43 43 chr3 207890018 207890114 -19634464 - MLT1B LTR MaLR -208 182 87 754 152 0 55 chr3 207890257 207890402 -19634176 - FLAM_C SINE Alu -6 137 1 424 305 109 60 chr3 207890648 207891032 -19633546 + L1MC4a LINE L1 6081 6483 -1325 243 277 0 0 chr3 207891155 207891220 -19633358 + A-rich Low_complexity Low_complexity 1 65 0 1287 157 0 0 chr3 207891430 207891634 -19632944 + AluSq SINE Alu 108 311 -2 673 146 0 0 chr3 207891637 207891733 -19632845 - MLT1B LTR MaLR -294 96 1 232 269 0 0 chr3 207891733 207891776 -19632802 + Charlie4 DNA MER1_type 1919 1961 0 2213 96 7 13 chr3 207892131 207892432 -19632146 + AluSg SINE Alu 1 299 -11 28 61 0 0 chr3 207892489 207892538 -19632040 + AT_rich Low_complexity Low_complexity 1 49 0 355 295 47 14 chr3 207892829 207893013 -19631565 - L1ME3 LINE L1 -265 5899 5706 317 182 105 70 chr3 207893035 207893178 -19631400 - MIR SINE MIR -23 239 92 232 162 0 0 chr3 207893315 207893352 -19631226 - MER94 DNA DNA -97 37 1 632 322 64 49 chr3 207893355 207893684 -19630894 + LTR33 LTR ERVL 163 496 -25 1180 143 129 5 chr3 207893798 207894008 -19630570 + AluJo SINE Alu 1 236 -76 345 334 56 76 chr3 207894615 207895025 -19629553 - L2 LINE L2 -54 3218 2817 182 366 115 8 chr3 207895118 207895361 -19629217 - L2 LINE L2 -687 2627 2359 1921 142 13 26 chr3 207895371 207895681 -19628897 + AluSx SINE Alu 1 306 -6 2344 211 71 39 chr3 207895687 207896222 -19628356 - MER68 LTR ERV1 -2 560 9 2287 100 3 0 chr3 207896760 207897059 -19627519 + AluSx SINE Alu 1 300 -12 188 262 66 16 chr3 207897059 207897120 -19627458 - L2 LINE L2 -1409 1905 1842 22 0 0 0 chr3 207897219 207897241 -19627337 + AT_rich Low_complexity Low_complexity 1 22 0 189 107 0 0 chr3 207897744 207897772 -19626806 + (T)n Simple_repeat Simple_repeat 1 28 0 902 156 0 0 chr3 207899238 207899379 -19625199 - FLAM_C SINE Alu -2 141 1 251 267 50 0 chr3 207899779 207899839 -19624739 + L2 LINE L2 3210 3272 0 556 291 46 20 chr3 207900057 207900253 -19624325 - L1M4b LINE L1 -6646 213 13 3374 142 24 13 chr3 207901733 207902274 -19622304 - L1PA13 LINE L1 -11 6152 5606 989 142 54 59 chr3 207902274 207902478 -19622100 + AluJb SINE Alu 1 203 -109 268 108 0 0 chr3 207902479 207902516 -19622062 + AluSq/x SINE Alu 70 106 -197 238 292 117 47 chr3 207902618 207902675 -19621903 - MIR SINE MIR -5 257 205 2118 111 4 0 chr3 207902675 207902987 -19621591 - AluSc SINE Alu 0 313 1 238 292 117 47 chr3 207902987 207903099 -19621479 - MIR SINE MIR -57 205 75 2052 113 7 13 chr3 207903122 207903423 -19621155 - AluSx SINE Alu -13 299 1 419 280 70 6 chr3 207903642 207903799 -19620779 - L1ME LINE L1 -436 5685 5519 2160 90 35 3 chr3 207903835 207904146 -19620432 - AluSx SINE Alu 0 312 1 2230 113 3 0 chr3 207904412 207904705 -19619873 - AluSx SINE Alu -18 294 1 763 187 67 104 chr3 207905558 207905774 -19618804 - MER58B DNA MER1_type -2083 337 133 1818 164 30 3 chr3 207905774 207906078 -19618500 - AluJo SINE Alu 0 312 1 763 187 67 104 chr3 207906078 207906160 -19618418 - MER58B DNA MER1_type -2287 133 50 2066 115 7 0 chr3 207906919 207907247 -19617331 - AluSg1 SINE Alu 0 330 1 1825 85 8 20 chr3 207907941 207908188 -19616390 + AluSq SINE Alu 1 244 -69 852 310 115 51 chr3 207908466 207908616 -19615962 + ERVL LTR ERVL 1728 1867 -3897 785 141 163 7 chr3 207908616 207908751 -19615827 + FAM SINE Alu 1 156 -19 852 310 115 51 chr3 207908751 207909251 -19615327 + ERVL LTR ERVL 1867 2420 -3344 374 299 5 24 chr3 207909488 207909520 -19615058 + ERVL LTR ERVL 2930 2961 -2732 2128 136 0 0 chr3 207909520 207909828 -19614750 + AluSx SINE Alu 1 308 -4 374 299 5 24 chr3 207909828 207909925 -19614653 + ERVL LTR ERVL 2961 3091 -2602 708 253 77 65 chr3 207910425 207910761 -19613817 - LTR16C LTR ERVL 0 491 152 551 233 213 7 chr3 207911317 207911467 -19613111 + MER5A DNA MER1_type 2 182 -7 653 197 142 96 chr3 207911474 207911692 -19612886 - MIR SINE MIR -17 245 18 2369 72 0 13 chr3 207911703 207912008 -19612570 + AluSx SINE Alu 1 301 -11 285 135 0 19 chr3 207912008 207912060 -19612518 - L1MB4 LINE L1 -39 6141 6091 911 142 14 115 chr3 207912066 207912284 -19612294 - L1MB3 LINE L1 -41 6142 5947 2233 97 13 0 chr3 207912494 207912794 -19611784 + AluSp SINE Alu 1 304 -9 1384 149 66 66 chr3 207912800 207912961 -19611617 + AluJo SINE Alu 3 166 -146 2585 169 42 86 chr3 207912961 207913601 -19610977 - LTR9 LTR ERV1 0 612 1 1384 149 66 66 chr3 207913601 207913728 -19610850 + AluJo SINE Alu 165 291 -21 2194 108 0 23 chr3 207913733 207914040 -19610538 + AluSg SINE Alu 1 300 -10 938 234 36 63 chr3 207914040 207914289 -19610289 + L1MC4 LINE L1 7566 7803 -239 2354 97 0 0 chr3 207914289 207914589 -19609989 + AluSq SINE Alu 1 300 -13 938 234 36 63 chr3 207914589 207914702 -19609876 + L1MC4 LINE L1 7803 7918 -124 216 202 12 71 chr3 207914715 207914766 -19609812 + (CATATA)n Simple_repeat Simple_repeat 4 50 -32 2537 130 26 16 chr3 207914766 207915151 -19609427 + MLT1B LTR MaLR 1 389 -1 216 202 12 71 chr3 207915151 207915183 -19609395 + (CATATA)n Simple_repeat Simple_repeat 50 82 0 204 40 0 0 chr3 207915185 207915210 -19609368 + (CA)n Simple_repeat Simple_repeat 1 25 0 338 208 50 50 chr3 207915224 207915325 -19609253 + L1MC4 LINE L1 7928 8028 -14 652 231 101 25 chr3 207915434 207915633 -19608945 + AluJo SINE Alu 76 289 -23 2343 96 3 0 chr3 207915635 207915926 -19608652 - AluSx SINE Alu -20 292 1 2311 81 3 0 chr3 207916098 207916395 -19608183 - AluY SINE Alu -13 298 1 301 214 100 107 chr3 207916395 207916535 -19608043 + HAL1b LINE L1 279 417 -931 228 258 11 86 chr3 207916554 207916647 -19607931 + HAL1b LINE L1 1155 1240 -108 993 179 6 28 chr3 207916654 207916833 -19607745 - FAM SINE Alu 0 175 1 2206 117 3 0 chr3 207916924 207917231 -19607347 - AluSg SINE Alu -2 308 1 329 233 23 12 chr3 207917452 207917538 -19607040 - MLT1I LTR MaLR -4 405 319 2331 149 24 83 chr3 207917776 207918017 -19606561 + MSTA LTR MaLR 1 204 -224 2332 97 3 3 chr3 207918017 207918326 -19606252 - AluSq SINE Alu -4 309 1 2331 149 24 83 chr3 207918326 207918539 -19606039 + MSTA LTR MaLR 204 428 0 2028 113 0 98 chr3 207918733 207918930 -19605648 - AluSx SINE Alu 0 302 150 2258 91 0 3 chr3 207918930 207919215 -19605363 - AluSx SINE Alu -28 284 1 2028 113 0 98 chr3 207919215 207919352 -19605226 - AluSx SINE Alu -152 150 1 930 143 6 42 chr3 207919592 207919760 -19604818 - L1MB4 LINE L1 -353 5827 5666 569 169 123 8 chr3 207920040 207920170 -19604408 - Charlie1 DNA MER1_type 0 2761 2617 701 246 75 5 chr3 207920179 207920366 -19604212 - Charlie1 DNA MER1_type -2557 204 5 712 229 68 21 chr3 207920623 207920815 -19603763 - HAL1 LINE L1 -1740 767 567 273 224 32 72 chr3 207921164 207921289 -19603289 + LTR33A LTR ERVL 404 523 0 1132 300 135 2 chr3 207921292 207921782 -19602796 - HAL1 LINE L1 -1952 555 1 286 327 113 40 chr3 207921957 207922102 -19602476 + L2 LINE L2 2344 2477 -837 3089 133 21 6 chr3 207922102 207922585 -19601993 - L1MB3 LINE L1 -1 6182 5693 286 327 113 40 chr3 207922585 207922818 -19601760 + L2 LINE L2 2477 2750 -564 334 368 64 18 chr3 207922857 207923137 -19601441 + L2 LINE L2 2824 3116 -156 821 160 160 11 chr3 207924483 207924664 -19599914 - MER3 DNA MER1_type 0 209 2 786 188 188 6 chr3 207924859 207925029 -19599549 + MER6B DNA MER2_type 9 209 -1 197 192 39 19 chr3 207925523 207925575 -19599003 + MER5A DNA MER1_type 114 166 -23 543 193 96 66 chr3 207925962 207926020 -19598558 - MER5B DNA MER1_type -1 177 122 935 183 59 0 chr3 207926020 207926173 -19598405 + FAM SINE Alu 1 162 -13 543 193 96 66 chr3 207926173 207926280 -19598298 - MER5B DNA MER1_type -56 122 7 622 163 117 7 chr3 207927106 207927252 -19597326 - MLT1C LTR MaLR 0 467 324 1692 96 82 53 chr3 207927452 207927734 -19596844 + AluSg SINE Alu 1 290 -20 2275 123 79 15 chr3 207927800 207928142 -19596436 - THE1B LTR MaLR 0 364 1 735 296 179 7 chr3 207928390 207928809 -19595769 - L1MC4a LINE L1 -1904 5904 5414 335 326 114 64 chr3 207929957 207930362 -19594216 + L1M2 LINE L1 948 1372 -5477 2020 117 0 19 chr3 207931062 207931369 -19593209 + AluSx SINE Alu 1 301 -11 191 167 0 24 chr3 207932443 207932485 -19592093 - L2 LINE L2 -1 3312 3272 188 35 35 0 chr3 207932685 207932714 -19591864 + (TTTTG)n Simple_repeat Simple_repeat 2 31 0 2039 116 7 0 chr3 207932715 207932990 -19591588 - AluSp SINE Alu -36 277 1 202 206 95 48 chr3 207933623 207933686 -19590892 + L2 LINE L2 3246 3311 -2 259 344 139 28 chr3 207933864 207934044 -19590534 + L2 LINE L2 3073 3272 0 624 182 224 18 chr3 207934173 207934343 -19590235 + MIR SINE MIR 36 240 -22 256 231 26 13 chr3 207934358 207934373 -19590205 + GA-rich Low_complexity Low_complexity 3 16 -65 938 137 6 74 chr3 207934373 207934548 -19590030 + FRAM SINE Alu 1 163 -3 256 231 26 13 chr3 207934548 207934610 -19589968 + GA-rich Low_complexity Low_complexity 16 81 0 2356 100 0 10 chr3 207934618 207934928 -19589650 + AluSc SINE Alu 1 307 -2 1464 81 0 5 chr3 207935206 207935391 -19589187 - AluSg SINE Alu -126 184 1 740 156 7 64 chr3 207936145 207936286 -19588292 + FLAM_C SINE Alu 1 133 0 278 163 0 41 chr3 207936965 207937063 -19587515 + (TA)n Simple_repeat Simple_repeat 1 94 0 1499 152 78 7 chr3 207937400 207937670 -19586908 + AluJo SINE Alu 6 294 -18 395 289 117 20 chr3 207939625 207939822 -19584756 + MARNA DNA Mariner 274 489 -97 2346 84 7 0 chr3 207939864 207940161 -19584417 + AluSc SINE Alu 1 299 -10 252 202 11 135 chr3 207941596 207941631 -19582947 + L1ME4a LINE L1 5975 6013 -108 2119 148 0 0 chr3 207941631 207941936 -19582642 - AluSx SINE Alu -7 305 1 252 202 11 135 chr3 207941936 207941989 -19582589 + L1ME4a LINE L1 6013 6052 -69 2434 79 0 0 chr3 207941994 207942297 -19582281 - AluY SINE Alu -8 303 1 2191 108 0 3 chr3 207944299 207944587 -19579991 - AluSx SINE Alu -25 287 1 2131 123 0 10 chr3 207944850 207945152 -19579426 - AluJb SINE Alu -13 299 1 619 180 0 0 chr3 207946349 207946449 -19578129 - AluJb SINE Alu -11 301 202 1703 183 145 29 chr3 207946449 207946891 -19577687 + L1MC4 LINE L1 7550 8042 0 2234 110 7 3 chr3 207947225 207947526 -19577052 + AluSq SINE Alu 1 302 -11 572 117 11 11 chr3 207947539 207947633 -19576945 + L1MB2 LINE L1 6072 6165 -6 745 154 73 0 chr3 207947693 207947816 -19576762 + L1ME LINE L1 5543 5674 -492 1643 153 4 15 chr3 207947840 207948088 -19576490 + AluSx SINE Alu 38 284 -28 270 73 0 0 chr3 207948088 207948129 -19576449 + (CA)n Simple_repeat Simple_repeat 2 42 0 1643 153 4 15 chr3 207948129 207948148 -19576430 + AluSx SINE Alu 284 302 -10 471 229 48 0 chr3 207948161 207948266 -19576312 + L1MB8 LINE L1 5999 6108 -70 1669 180 3 33 chr3 207948575 207948880 -19575698 + AluJo SINE Alu 1 296 -16 599 299 94 21 chr3 207949071 207949305 -19575273 - MIR SINE MIR -4 258 8 2273 99 16 0 chr3 207949542 207949845 -19574733 + AluSx SINE Alu 1 308 -4 2166 132 0 3 chr3 207950057 207950361 -19574217 + AluSx SINE Alu 1 303 -9 682 214 120 69 chr3 207950362 207950637 -19573941 - MER102b DNA MER1_type -15 326 38 1780 164 17 0 chr3 207950828 207951121 -19573457 + AluJb SINE Alu 1 298 -14 323 227 87 92 chr3 207951518 207951703 -19572875 + MIR SINE MIR 71 254 -8 1963 129 7 7 chr3 207951765 207952059 -19572519 + AluSp SINE Alu 6 299 -14 21 57 0 0 chr3 207952060 207952095 -19572483 + AT_rich Low_complexity Low_complexity 1 35 0 1038 113 0 0 chr3 207952637 207952770 -19571808 - FLAM_C SINE Alu 0 133 1 532 246 82 10 chr3 207953002 207953209 -19571369 + L1MC4 LINE L1 7455 7676 -366 267 133 89 0 chr3 207954507 207954552 -19570026 - ORSL DNA AcHobo 0 275 227 * 322 22 0 43 chr3 207954541 207954587 -19569991 - PABL_A LTR ERV1 -38 622 579 880 67 0 0 chr3 207954589 207954726 -19569852 - AluSg/x SINE Alu 0 314 178 715 135 150 63 chr3 207954726 207954933 -19569645 - ORSL DNA AcHobo -47 228 4 2271 104 7 0 chr3 207954933 207955231 -19569347 - AluSx SINE Alu -12 300 1 219 337 45 0 chr3 207955314 207955403 -19569175 - MIR SINE MIR -50 212 120 318 183 21 118 chr3 207955429 207955475 -19569103 - MIR SINE MIR 0 262 228 2183 116 0 3 chr3 207955475 207955777 -19568801 - AluSg SINE Alu -9 301 1 318 183 21 118 chr3 207955777 207955823 -19568755 - MIR SINE MIR -34 228 179 208 250 15 29 chr3 207956420 207956488 -19568090 + L2 LINE L2 3169 3235 -78 343 227 84 113 chr3 207956491 207956694 -19567884 + MIR SINE MIR 32 228 -34 2282 135 94 17 chr3 207956711 207957125 -19567453 - L1MB3 LINE L1 -7 6176 5731 207 0 0 0 chr3 207957128 207957151 -19567427 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 573 149 0 11 chr3 207957153 207957240 -19567338 - AluSg/x SINE Alu -25 287 202 3514 81 8 25 chr3 207957244 207957318 -19567260 - PABL_A LTR ERV1 -9 651 577 2121 95 0 11 chr3 207957318 207957632 -19566946 - AluSx SINE Alu 0 311 1 3514 81 8 25 chr3 207957632 207958027 -19566551 - PABL_A LTR ERV1 -83 577 189 533 190 0 0 chr3 207958027 207958106 -19566472 - AluS SINE Alu -229 84 6 520 206 11 0 chr3 207958191 207958283 -19566295 - MER6B DNA MER2_type -179 97 5 2222 162 13 34 chr3 207958284 207958392 -19566186 - L1MB3 LINE L1 -450 5721 5612 2317 143 19 34 chr3 207958392 207958771 -19565807 - MER83C LTR ERV1 0 373 1 2222 162 13 34 chr3 207958771 207959091 -19565487 - L1MB3 LINE L1 -559 5612 5287 654 168 24 48 chr3 207959091 207959216 -19565362 - FLAM_A SINE Alu -11 122 1 2222 162 13 34 chr3 207959216 207959227 -19565351 - L1MB3 LINE L1 -884 5287 5277 186 43 0 0 chr3 207959227 207959250 -19565328 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1895 143 7 7 chr3 207959252 207959532 -19565046 - AluJo SINE Alu -32 280 1 2222 162 13 34 chr3 207959532 207959753 -19564825 - L1MB3 LINE L1 -895 5276 5100 22 0 0 0 chr3 207959872 207959894 -19564684 + AT_rich Low_complexity Low_complexity 1 22 0 2013 102 49 7 chr3 207960553 207960838 -19563740 - AluSx SINE Alu -13 299 3 2355 57 17 13 chr3 207961089 207961389 -19563189 - AluY SINE Alu -10 301 1 318 122 0 0 chr3 207961396 207961445 -19563133 + MADE1 DNA Mariner 32 80 0 221 265 114 30 chr3 207961464 207961596 -19562982 - L3 LINE CR1 -467 1110 968 264 303 133 43 chr3 207961737 207961948 -19562630 - L3 LINE CR1 -865 712 483 288 306 74 0 chr3 207962156 207962264 -19562314 - L3 LINE CR1 -1061 516 401 677 154 0 0 chr3 207963388 207963492 -19561086 - U13 snRNA snRNA 0 104 1 22 56 0 0 chr3 207963753 207963789 -19560789 + AT_rich Low_complexity Low_complexity 1 36 0 2198 84 0 24 chr3 207964874 207965170 -19559408 + AluSg SINE Alu 1 289 -21 2043 142 0 0 chr3 207965601 207965903 -19558675 - AluSx SINE Alu -10 302 1 715 281 149 4 chr3 207966112 207966340 -19558238 - MIR SINE MIR 0 262 2 511 246 176 7 chr3 207966587 207966729 -19557849 + MIR SINE MIR 2 167 -95 345 162 0 5 chr3 207967095 207967160 -19557418 + Alu SINE Alu 3 47 -255 2071 109 0 11 chr3 207967270 207967554 -19557024 - AluSg SINE Alu -29 281 1 451 171 11 0 chr3 207967554 207967642 -19556936 - L1 LINE L1 -818 5328 5240 2468 165 19 9 chr3 207967643 207967917 -19556661 - MSTA LTR MaLR 0 428 147 3654 98 14 4 chr3 207967917 207968405 -19556173 + LTR15 LTR ERV1 1 493 0 2468 165 19 9 chr3 207968405 207968554 -19556024 - MSTA LTR MaLR -281 147 1 2026 155 3 6 chr3 207968555 207968903 -19555675 - L1 LINE L1 -904 5242 4896 1515 166 10 14 chr3 207968906 207969195 -19555383 - L1 LINE L1 -1467 4679 4392 2041 129 7 10 chr3 207969628 207969930 -19554648 + AluSx SINE Alu 12 312 0 682 314 275 32 chr3 207970272 207970474 -19554104 - L2 LINE L2 -466 2848 2696 765 223 65 39 chr3 207970474 207970703 -19553875 + MER106A DNA MER1_type 2 236 0 682 314 275 32 chr3 207970703 207972017 -19552561 - L2 LINE L2 -618 2696 963 2215 122 3 3 chr3 207972302 207972614 -19551964 - AluSx SINE Alu 0 312 1 335 378 52 38 chr3 207972740 207973007 -19551571 + L2 LINE L2 3000 3270 -2 1949 141 34 0 chr3 207973037 207973334 -19551244 - AluSx SINE Alu -5 307 1 910 147 0 0 chr3 207973479 207973615 -19550963 + AluSg/x SINE Alu 161 296 -14 666 279 80 27 chr3 207973928 207973953 -19550625 - L1P3 LINE L1 -377 5795 5773 8026 25 5 3 chr3 207973953 207975436 -19549142 - L1PA4 LINE L1 0 6155 4663 666 279 80 27 chr3 207975436 207975826 -19548752 - L1P3 LINE L1 -399 5773 5352 1719 185 4 0 chr3 207975843 207976124 -19548454 - AluJb SINE Alu -30 282 1 2092 102 48 0 chr3 207976233 207976528 -19548050 - AluSx SINE Alu -3 309 1 21 0 0 0 chr3 207976687 207976708 -19547870 + AT_rich Low_complexity Low_complexity 1 21 0 1709 156 20 24 chr3 207976721 207976894 -19547684 - AluJo SINE Alu -18 294 121 183 42 0 0 chr3 207976894 207976918 -19547660 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 1709 156 20 24 chr3 207976918 207977039 -19547539 - AluJo SINE Alu -191 121 1 782 152 23 23 chr3 207977059 207977191 -19547387 - FLAM_A SINE Alu -1 132 1 527 289 0 13 chr3 207977231 207977390 -19547188 - L1MC4a LINE L1 -1911 5897 5741 186 330 156 18 chr3 207977799 207977908 -19546670 - L2 LINE L2 -13 3259 3136 218 265 29 59 chr3 207977932 207978000 -19546578 + L2 LINE L2 3189 3254 -18 2135 124 0 10 chr3 207978138 207978445 -19546133 + AluSg SINE Alu 1 304 -6 22 0 0 0 chr3 207978829 207978851 -19545727 + AT_rich Low_complexity Low_complexity 1 22 0 378 74 0 0 chr3 207979298 207979352 -19545226 + (CA)n Simple_repeat Simple_repeat 2 55 0 1957 114 40 3 chr3 207979534 207979831 -19544747 - AluSx SINE Alu 0 312 5 611 163 159 72 chr3 207980175 207980426 -19544152 - L1MA4 LINE L1 0 6300 6028 1896 146 0 0 chr3 207980528 207980803 -19543775 - AluSx SINE Alu -37 275 1 356 206 110 110 chr3 207981785 207981931 -19542647 + MIR SINE MIR 35 180 -82 24 0 0 0 chr3 207982312 207982336 -19542242 + AT_rich Low_complexity Low_complexity 1 24 0 2206 108 0 3 chr3 207982570 207982865 -19541713 - AluSp SINE Alu -19 294 1 897 131 0 0 chr3 207983092 207983214 -19541364 - FLAM_A SINE Alu -9 124 3 915 223 0 0 chr3 207983462 207983637 -19540941 - AluJb SINE Alu 0 312 138 473 292 71 91 chr3 207983996 207984096 -19540482 + L2 LINE L2 2444 2545 -727 2235 106 6 6 chr3 207984096 207984408 -19540170 + AluSx SINE Alu 1 312 0 473 292 71 91 chr3 207984408 207984518 -19540060 + L2 LINE L2 2545 2656 -616 1213 141 52 0 chr3 207984518 207984710 -19539868 + MER3 DNA MER1_type 5 206 -3 473 292 71 91 chr3 207984710 207985240 -19539338 + L2 LINE L2 2656 3174 -98 255 133 0 44 chr3 207985559 207985573 -19539005 + AluSp SINE Alu 124 135 -168 247 57 29 0 chr3 207985573 207985608 -19538970 + Alu SINE Alu 1 36 -264 1354 100 0 0 chr3 207985609 207985789 -19538789 - AluSg/x SINE Alu -6 304 125 22 0 0 0 chr3 207986106 207986128 -19538450 + AT_rich Low_complexity Low_complexity 1 22 0 2045 128 0 0 chr3 207986162 207986473 -19538105 - AluSx SINE Alu 0 311 1 2803 88 11 16 chr3 207986545 207986922 -19537656 + THE1C LTR MaLR 1 375 0 26 0 0 0 chr3 207987612 207987638 -19536940 + AT_rich Low_complexity Low_complexity 1 26 0 450 265 60 22 chr3 207987773 207987958 -19536620 - L1ME4a LINE L1 -216 5905 5714 1542 106 62 144 chr3 207988614 207988953 -19535625 - AluSx SINE Alu -1 311 1 277 237 129 21 chr3 207989552 207989645 -19534933 - L2 LINE L2 -2 3270 3168 202 300 157 0 chr3 207989645 207989715 -19534863 - L2 LINE L2 -31 3282 3202 2440 75 3 3 chr3 207990126 207990432 -19534146 - AluSp SINE Alu -7 306 1 2230 66 0 15 chr3 207991157 207991429 -19533149 + AluY SINE Alu 29 296 -15 406 300 63 21 chr3 207991659 207991849 -19532729 - MIR SINE MIR -1 261 64 1573 118 82 31 chr3 207992207 207992462 -19532116 - AluJb SINE Alu -18 294 27 644 229 9 65 chr3 207992490 207992704 -19531874 - L1M4 LINE L1 -1778 4368 4167 188 65 0 32 chr3 207992704 207992735 -19531843 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 43 101 0 0 chr3 207992931 207993079 -19531499 + AT_rich Low_complexity Low_complexity 1 148 0 188 35 35 0 chr3 207993189 207993218 -19531360 + (TTA)n Simple_repeat Simple_repeat 2 31 0 218 249 0 0 chr3 207993465 207993520 -19531058 + MIR SINE MIR 57 110 -102 243 0 0 0 chr3 207993523 207993550 -19531028 + (T)n Simple_repeat Simple_repeat 1 27 0 1785 165 7 0 chr3 207993625 207993898 -19530680 + AluJb SINE Alu 5 279 -33 261 0 0 0 chr3 207993902 207993931 -19530647 + (CAA)n Simple_repeat Simple_repeat 2 30 0 183 80 0 0 chr3 207993933 207993958 -19530620 + (GA)n Simple_repeat Simple_repeat 2 26 0 1082 187 61 35 chr3 207994038 207994268 -19530310 - MER46A DNA MER2_type 0 236 1 2246 97 14 0 chr3 207994279 207994568 -19530010 - AluSg SINE Alu -16 294 2 2441 157 108 40 chr3 207994951 207995479 -19529099 - LTR6A LTR ERV1 0 564 1 728 256 67 60 chr3 207996238 207997117 -19527461 - L1ME2 LINE L1 -208 5956 5061 2481 144 8 19 chr3 207997117 207997485 -19527093 - THE1B LTR MaLR 0 364 1 728 256 67 60 chr3 207997485 207997664 -19526914 - L1ME2 LINE L1 -1103 5061 4885 2402 86 0 0 chr3 207997683 207997986 -19526592 - AluSc SINE Alu -5 304 2 387 0 0 0 chr3 207997999 207998042 -19526536 + (CA)n Simple_repeat Simple_repeat 2 44 0 1771 162 0 39 chr3 207998042 207998351 -19526227 - AluJb SINE Alu -15 297 1 324 269 45 15 chr3 207998542 207998676 -19525902 - L1ME2 LINE L1 -1439 4707 4570 613 157 19 9 chr3 207998695 207998803 -19525775 + L2 LINE L2 3197 3305 -8 324 315 92 29 chr3 207998807 207999080 -19525498 - L1ME2 LINE L1 -1624 4522 4233 266 177 97 0 chr3 207999378 207999440 -19525138 - MIR SINE MIR -78 130 63 1575 165 18 18 chr3 208000037 208000322 -19524256 + AluJo SINE Alu 10 294 -18 2479 91 3 0 chr3 208001107 208001415 -19523163 + AluSp SINE Alu 1 309 -4 1170 68 0 0 chr3 208001808 208001969 -19522609 + (TCCA)n Simple_repeat Simple_repeat 1 161 0 202 163 23 23 chr3 208001969 208002012 -19522566 - L2 LINE L2 -13 3259 3217 2289 92 0 13 chr3 208003283 208003587 -19520991 + AluSg SINE Alu 5 304 -6 21 0 0 0 chr3 208003926 208003947 -19520631 + AT_rich Low_complexity Low_complexity 1 21 0 1856 132 42 3 chr3 208004477 208004764 -19519814 - AluJb SINE Alu -14 298 1 1952 150 7 3 chr3 208004796 208005090 -19519488 + AluJo SINE Alu 9 303 -9 2366 201 38 25 chr3 208005117 208005696 -19518882 - L1MC4a LINE L1 -152 7656 7083 225 280 27 0 chr3 208005908 208005983 -19518595 + L1MC4 LINE L1 6615 6691 -1351 404 198 64 45 chr3 208006004 208006173 -19518405 + L1ME4a LINE L1 5936 6181 -19 1713 167 13 36 chr3 208007049 208007355 -19517223 - AluJo SINE Alu -13 299 1 2116 108 0 17 chr3 208007567 208007881 -19516697 - AluSx SINE Alu 0 309 1 1907 146 3 14 chr3 208007883 208008177 -19516401 - AluJb SINE Alu -21 291 1 950 220 63 139 chr3 208008190 208008423 -19516155 - MLT1J LTR MaLR -58 453 275 2403 88 13 3 chr3 208008423 208008730 -19515848 + AluSx SINE Alu 1 310 -2 950 220 63 139 chr3 208008730 208008986 -19515592 - MLT1J LTR MaLR -236 275 1 2308 219 76 24 chr3 208009768 208010231 -19514347 + MER119 DNA MER1_type 4 500 -83 2318 89 7 10 chr3 208010231 208010534 -19514044 - AluSq SINE Alu -11 302 1 2308 219 76 24 chr3 208010534 208010610 -19513968 + MER119 DNA MER1_type 500 571 -12 26 0 0 0 chr3 208011439 208011465 -19513113 + AT_rich Low_complexity Low_complexity 1 26 0 281 248 114 9 chr3 208011960 208012065 -19512513 - L2 LINE L2 -7 3265 3150 303 291 126 29 chr3 208012225 208012400 -19512178 - MIR SINE MIR -14 248 57 23 68 0 0 chr3 208012540 208012584 -19511994 + AT_rich Low_complexity Low_complexity 1 44 0 2274 105 3 0 chr3 208012774 208013068 -19511510 - AluSg1 SINE Alu -14 295 1 1432 209 46 3 chr3 208013334 208013617 -19510961 + AluJo SINE Alu 3 297 -15 410 0 0 20 chr3 208013642 208013693 -19510885 + (TTTA)n Simple_repeat Simple_repeat 2 51 0 426 285 174 14 chr3 208014258 208014465 -19510113 - MIR SINE MIR 0 262 23 182 167 0 24 chr3 208015649 208015691 -19508887 + CT-rich Low_complexity Low_complexity 3 43 0 2494 71 0 0 chr3 208015911 208016221 -19508357 - AluY SINE Alu -1 310 1 192 231 51 26 chr3 208017375 208017453 -19507125 - MIR3 SINE MIR -3 205 126 2048 199 21 12 chr3 208017459 208017891 -19506687 + MER63B DNA MER1_type 1 436 0 270 214 161 27 chr3 208018329 208018441 -19506137 + L2 LINE L2 2618 2744 -570 296 229 82 82 chr3 208018804 208018987 -19505591 - L2 LINE L2 -568 2746 2564 207 0 0 0 chr3 208019196 208019219 -19505359 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 2907 167 22 30 chr3 208019219 208019611 -19504967 - L1MB7 LINE L1 -66 6118 5731 2201 121 0 22 chr3 208019611 208019925 -19504653 - AluSq SINE Alu -6 307 1 2907 167 22 30 chr3 208019925 208020125 -19504453 - L1MB7 LINE L1 -453 5731 5531 1058 261 140 34 chr3 208021136 208021572 -19503006 + LTR16C LTR ERVL 1 482 -9 228 267 87 70 chr3 208021702 208021874 -19502704 + MIR SINE MIR 44 218 -44 2272 85 0 29 chr3 208022211 208022518 -19502060 - AluSx SINE Alu -14 298 1 475 292 37 25 chr3 208022932 208023093 -19501485 + MIR SINE MIR 14 176 -86 7199 131 48 11 chr3 208024536 208025114 -19499464 - Tigger3b DNA MER2_type -1797 1231 676 2244 106 20 0 chr3 208025114 208025415 -19499163 - AluSx SINE Alu -5 307 1 7199 131 48 11 chr3 208025415 208026023 -19498555 - Tigger3b DNA MER2_type -2352 676 1 392 222 79 114 chr3 208026193 208026536 -19498042 - L1ME4a LINE L1 0 6121 5791 495 238 201 46 chr3 208026540 208026960 -19497618 - L1ME4a LINE L1 -378 5743 5255 243 198 62 49 chr3 208027764 208027845 -19496733 + L2 LINE L2 2993 3074 -198 335 277 9 36 chr3 208028401 208028513 -19496065 + L2 LINE L2 3205 3313 0 556 144 0 41 chr3 208028542 208028639 -19495939 + FLAM_A SINE Alu 34 126 -16 1875 158 3 37 chr3 208028761 208029084 -19495494 - AluJb SINE Alu 0 312 1 671 140 0 28 chr3 208029098 208029205 -19495373 - FLAM_C SINE Alu -16 127 24 2472 91 0 0 chr3 208029256 208029565 -19495013 - AluSg SINE Alu -1 309 1 2224 92 4 0 chr3 208029820 208030126 -19494452 - AluSp SINE Alu 0 307 1 250 306 126 9 chr3 208030323 208030434 -19494144 + L2 LINE L2 3149 3272 0 23 0 0 0 chr3 208031751 208031774 -19492804 + AT_rich Low_complexity Low_complexity 1 23 0 958 165 6 6 chr3 208032189 208032347 -19492231 - FRAM SINE Alu -7 169 12 181 121 0 30 chr3 208032591 208032624 -19491954 + MER5A DNA MER1_type 45 76 -113 * 378 198 0 112 chr3 208032616 208032660 -19491918 - MER5A DNA MER1_type -80 109 62 1872 71 34 0 chr3 208032660 208032921 -19491657 - AluY SINE Alu 0 305 37 378 198 0 112 chr3 208032921 208032991 -19491587 - MER5A DNA MER1_type -127 62 7 193 219 219 0 chr3 208033726 208033790 -19490788 + L2 LINE L2 3228 3305 -8 2321 104 0 0 chr3 208034714 208035011 -19489567 - AluSq SINE Alu -16 297 1 653 135 0 0 chr3 208035044 208035148 -19489430 - L1MB3 LINE L1 -7 6176 6073 2306 89 14 0 chr3 208035692 208035985 -19488593 + AluSg SINE Alu 1 297 -13 498 262 167 0 chr3 208036210 208036397 -19488181 + MER5C DNA MER1_type 4 158 -166 1828 116 14 0 chr3 208036397 208036674 -19487904 - L1MA3 LINE L1 0 6305 6025 498 262 167 0 chr3 208036674 208036761 -19487817 + MER5C DNA MER1_type 158 324 0 228 317 50 10 chr3 208037206 208037307 -19487271 - L2 LINE L2 0 3272 3168 1755 174 3 23 chr3 208037773 208038078 -19486500 + AluJo SINE Alu 1 299 -13 2430 104 0 0 chr3 208038078 208038387 -19486191 + AluSx SINE Alu 1 309 -3 1952 133 28 0 chr3 208038840 208039126 -19485452 + AluSx SINE Alu 1 294 -18 428 226 78 0 chr3 208039606 208039721 -19484857 - L2 LINE L2 0 3313 3190 299 29 0 0 chr3 208039755 208039789 -19484789 - THE1B LTR MaLR 0 364 331 * 1117 68 14 0 chr3 208039785 208039932 -19484646 - THE1B LTR MaLR -215 149 1 243 324 86 2 chr3 208039932 208040241 -19484337 - L2 LINE L2 -147 3166 2826 326 295 30 81 chr3 208040506 208040585 -19483993 + MIR SINE MIR 8 90 -172 1673 184 4 7 chr3 208040585 208040862 -19483716 - AluJb SINE Alu -17 295 20 326 295 30 81 chr3 208040862 208041016 -19483562 + MIR SINE MIR 90 229 -33 6426 62 44 41 chr3 208041068 208042013 -19482565 - SVA Other Other 0 1386 439 5892 56 35 95 chr3 208042793 208043904 -19480674 - SVA Other Other -520 866 1 1592 178 125 58 chr3 208043915 208044347 -19480231 - MER31B LTR ERV1 0 466 6 2100 148 0 0 chr3 208044368 208044671 -19479907 - AluSx SINE Alu -9 303 1 519 286 16 39 chr3 208044716 208044898 -19479680 + MER5B DNA MER1_type 1 178 0 239 252 173 31 chr3 208045189 208045316 -19479262 + L1ME4a LINE L1 5974 6118 -3 2080 114 26 0 chr3 208046028 208046300 -19478278 + AluSx SINE Alu 1 279 -33 194 0 39 0 chr3 208046302 208046328 -19478250 + (CAAA)n Simple_repeat Simple_repeat 1 27 0 212 327 26 9 chr3 208046333 208046446 -19478132 + MER5A DNA MER1_type 69 183 -6 298 274 85 0 chr3 208046539 208046645 -19477933 - MER91C DNA MER1_type -19 121 7 227 300 56 0 chr3 208047333 208047423 -19477155 + MIR SINE MIR 20 114 -94 467 234 188 31 chr3 208047867 208048059 -19476519 + MER102b DNA MER1_type 120 341 0 490 254 75 8 chr3 208048708 208048842 -19475736 - MIR SINE MIR -117 145 3 278 206 28 112 chr3 208050318 208050425 -19474153 - L1MC5 LINE L1 -30 7931 7834 180 185 31 15 chr3 208050463 208050528 -19474050 + CT-rich Low_complexity Low_complexity 3 68 0 1596 179 7 34 chr3 208050650 208050947 -19473631 + AluJo SINE Alu 1 289 -23 230 250 220 12 chr3 208051054 208051222 -19473356 - L1MC5 LINE L1 -457 7504 7302 602 230 68 0 chr3 208052132 208052293 -19472285 + MIR SINE MIR 72 243 -19 182 320 107 27 chr3 208053384 208053459 -19471119 + MIR SINE MIR 107 187 -75 216 0 0 0 chr3 208053726 208053750 -19470828 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2221 106 0 3 chr3 208054443 208054758 -19469820 - AluSq SINE Alu 0 314 1 217 305 0 0 chr3 208054953 208055012 -19469566 + MIR SINE MIR 203 261 -1 189 261 0 0 chr3 208055014 208055060 -19469518 + MIR SINE MIR 100 145 -117 2318 82 0 0 chr3 208055669 208055950 -19468628 - AluSg SINE Alu -15 295 15 319 0 65 0 chr3 208056086 208056132 -19468446 + (TTTG)n Simple_repeat Simple_repeat 2 50 0 667 128 0 0 chr3 208056134 208056228 -19468350 - AluSq SINE Alu -32 281 188 1550 65 0 11 chr3 208056371 208056556 -19468022 - AluSq SINE Alu -130 183 1 263 190 103 0 chr3 208056874 208056971 -19467607 - L1MC/D LINE L1 -316 5805 5695 2258 84 17 0 chr3 208057965 208058264 -19466314 + L1PA8A LINE L1 5801 6104 -27 183 42 0 0 chr3 208059245 208059269 -19465309 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 200 326 163 0 chr3 208059419 208059560 -19465018 + MIR3 SINE MIR 35 198 -10 483 100 0 0 chr3 208060392 208060462 -19464116 + (TTCC)n Simple_repeat Simple_repeat 1 70 0 288 146 34 0 chr3 208061077 208061166 -19463412 + (TA)n Simple_repeat Simple_repeat 1 92 0 2092 118 3 10 chr3 208061166 208061320 -19463258 - AluSx SINE Alu -25 287 134 2334 97 7 0 chr3 208061320 208061630 -19462948 - AluSp SINE Alu -1 312 1 2092 118 3 10 chr3 208061630 208061764 -19462814 - AluSx SINE Alu -178 134 1 279 235 15 0 chr3 208062003 208062071 -19462507 + (TG)n Simple_repeat Simple_repeat 2 70 0 427 271 193 10 chr3 208062933 208063140 -19461438 - MIR SINE MIR 0 262 18 206 275 286 0 chr3 208063509 208063600 -19460978 - L2 LINE L2 -1 3271 3155 711 231 28 32 chr3 208063656 208063872 -19460706 + MIR SINE MIR 8 222 -40 275 211 0 0 chr3 208064187 208064244 -19460334 - MIR SINE MIR -44 218 162 2368 87 0 0 chr3 208064882 208065169 -19459409 + AluSq SINE Alu 1 287 -26 343 214 36 0 chr3 208065173 208065257 -19459321 + L1MCa LINE L1 1979 2065 -4361 222 264 46 35 chr3 208065453 208065540 -19459038 - MIR SINE MIR -108 154 67 2150 71 10 71 chr3 208066627 208066937 -19457641 - AluSx SINE Alu -16 296 6 544 177 143 63 chr3 208067531 208067706 -19456872 - MER5A DNA MER1_type 0 189 1 287 205 56 23 chr3 208068957 208069041 -19455537 - Charlie8 DNA MER1_type -2 2415 1344 471 300 140 16 chr3 208069150 208069393 -19455185 - Charlie8 DNA MER1_type -2142 275 3 2185 101 0 13 chr3 208070199 208070497 -19454081 - AluY SINE Alu -17 294 1 1808 135 45 0 chr3 208071042 208071348 -19453230 + AluSc SINE Alu 1 318 0 1709 160 0 49 chr3 208071361 208071667 -19452911 + AluJb SINE Alu 1 291 -21 421 231 33 16 chr3 208072153 208072290 -19452288 + MIR SINE MIR 11 148 -62 2572 44 0 0 chr3 208073402 208073697 -19450881 - AluY SINE Alu -16 295 1 313 219 235 0 chr3 208073720 208073839 -19450739 - L1ME4a LINE L1 0 6121 5975 2366 85 0 3 chr3 208073886 208074180 -19450398 - AluSg SINE Alu -17 293 1 367 246 55 9 chr3 208074312 208074422 -19450156 + MER103 DNA DNA 50 164 -2 2340 81 0 0 chr3 208074582 208074867 -19449711 - AluSc SINE Alu -20 289 5 2621 50 0 0 chr3 208075182 208075482 -19449096 - AluY SINE Alu -11 300 1 2315 99 0 16 chr3 208076341 208076655 -19447923 + AluSc SINE Alu 1 309 0 289 78 314 0 chr3 208076661 208076712 -19447866 - L1MB7 LINE L1 -10 6174 6108 4685 164 49 18 chr3 208076830 208077198 -19447380 - L1MB7 LINE L1 -15 6169 5814 2075 132 0 0 chr3 208077198 208077509 -19447069 + AluSx SINE Alu 1 311 0 4685 164 49 18 chr3 208077509 208078495 -19446083 - L1MB7 LINE L1 -370 5814 4771 2235 107 3 0 chr3 208078495 208078785 -19445793 - AluSx SINE Alu -21 291 1 4685 164 49 18 chr3 208078785 208078815 -19445763 - L1MB7 LINE L1 -1413 4771 4743 183 80 0 0 chr3 208078850 208078875 -19445703 + (A)n Simple_repeat Simple_repeat 1 25 0 288 0 0 0 chr3 208079083 208079115 -19445463 + (TG)n Simple_repeat Simple_repeat 1 32 0 2335 90 3 0 chr3 208080877 208081177 -19443401 - AluSg SINE Alu -9 301 1 719 199 213 9 chr3 208081511 208081727 -19442851 - MIR SINE MIR -2 260 1 853 222 11 16 chr3 208082126 208082315 -19442263 - MIR SINE MIR -74 188 1 1276 108 0 0 chr3 208082318 208082485 -19442093 - AluSg/x SINE Alu -6 304 138 292 333 75 0 chr3 208082541 208082661 -19441917 + L2 LINE L2 3125 3253 -19 229 220 17 17 chr3 208083559 208083618 -19440960 + L2 LINE L2 3214 3272 0 1975 152 0 3 chr3 208084318 208084608 -19439970 - AluSx SINE Alu -23 289 1 234 256 49 12 chr3 208085098 208085180 -19439398 - L1MB7 LINE L1 -1566 4580 4496 2199 105 0 10 chr3 208085509 208085805 -19438773 - AluSc SINE Alu -16 293 1 764 278 105 52 chr3 208085891 208086346 -19438232 - MLT1K LTR MaLR -21 567 80 855 144 120 0 chr3 208086346 208086513 -19438065 + MER5A DNA MER1_type 1 187 -2 764 278 105 52 chr3 208086513 208086572 -19438006 - MLT1K LTR MaLR -508 80 26 856 116 0 0 chr3 208087941 208088062 -19436516 + MSTB LTR MaLR 1 121 -305 857 214 17 30 chr3 208088448 208088682 -19435896 - LTR37B LTR ERV1 0 468 238 1665 210 37 17 chr3 208088842 208089194 -19435384 - MSTB LTR MaLR 0 426 68 6821 120 106 143 chr3 208089195 208090924 -19433654 - pTR5 LTR ERV1 -5 2433 769 674 46 0 35 chr3 208090932 208091019 -19433559 - MSTB LTR MaLR -342 84 1 401 272 35 3 chr3 208091060 208091223 -19433355 - MER58C DNA MER1_type 0 215 2 270 184 245 20 chr3 208091223 208091320 -19433258 - LTR37B LTR ERV1 -347 121 3 225 0 0 0 chr3 208091758 208091783 -19432795 + (T)n Simple_repeat Simple_repeat 1 25 0 2057 134 13 7 chr3 208092343 208092650 -19431928 - AluJb SINE Alu -3 309 1 1018 223 66 113 chr3 208093209 208093381 -19431197 - L2 LINE L2 0 3313 3134 2325 103 0 7 chr3 208093381 208093683 -19430895 + AluSq SINE Alu 1 300 -13 1018 223 66 113 chr3 208093683 208094141 -19430437 - L2 LINE L2 -179 3134 2695 2115 116 13 7 chr3 208094151 208094454 -19430124 + AluSg SINE Alu 1 305 -5 252 86 0 0 chr3 208094619 208094654 -19429924 + (A)n Simple_repeat Simple_repeat 1 35 0 879 189 144 52 chr3 208094656 208094947 -19429631 - L2 LINE L2 -613 2701 2384 2227 210 2 0 chr3 208094950 208095379 -19429199 + L1M4 LINE L1 3959 4388 -1758 441 245 198 0 chr3 208095414 208095626 -19428952 - L2 LINE L2 -1134 2180 1927 467 210 183 45 chr3 208095700 208095924 -19428654 - MER5C DNA MER1_type -59 265 11 273 277 92 46 chr3 208096201 208096331 -19428247 - MIR SINE MIR -70 192 57 572 268 67 31 chr3 208096757 208096951 -19427627 - MIR SINE MIR -13 249 49 834 136 9 150 chr3 208097034 208097254 -19427324 + MER53 DNA DNA 1 189 0 2190 134 3 0 chr3 208097646 208097944 -19426634 - AluSq SINE Alu -14 299 1 35 92 0 0 chr3 208098025 208098123 -19426455 + AT_rich Low_complexity Low_complexity 1 98 0 * 327 239 149 102 chr3 208098066 208098576 -19426002 - L1ME4a LINE L1 -6 6115 5582 862 190 57 13 chr3 208098619 208098777 -19425801 + FRAM SINE Alu 1 163 -13 323 192 129 12 chr3 208100649 208100790 -19423788 + MIR SINE MIR 14 143 -65 23 54 0 0 chr3 208101262 208101299 -19423279 + AT_rich Low_complexity Low_complexity 1 37 0 440 277 128 7 chr3 208102169 208102317 -19422261 + MIR3 SINE MIR 38 203 -5 2111 105 39 0 chr3 208102508 208102793 -19421785 - AluSx SINE Alu -16 296 1 1078 196 24 71 chr3 208103306 208103642 -19420936 + MER33 DNA MER1_type 1 320 -4 1791 176 156 31 chr3 208104691 208104966 -19419612 - MLT1D LTR MaLR -1 504 265 2121 141 0 0 chr3 208104966 208105265 -19419313 + AluSx SINE Alu 1 299 -13 1791 176 156 31 chr3 208105265 208105437 -19419141 - MLT1D LTR MaLR -240 265 1 391 294 25 8 chr3 208105899 208106018 -19418560 + MIR SINE MIR 34 154 -108 4625 262 96 17 chr3 208106252 208108102 -19416476 - L2 LINE L2 -6 3307 1306 514 307 166 26 chr3 208109436 208109827 -19414751 + L2 LINE L2 2862 3307 -6 23 0 0 0 chr3 208109854 208109877 -19414701 + AT_rich Low_complexity Low_complexity 1 23 0 234 0 0 0 chr3 208112505 208112531 -19412047 + (TA)n Simple_repeat Simple_repeat 2 27 0 2370 88 0 0 chr3 208113822 208114117 -19410461 - AluSg SINE Alu -15 295 1 23 0 0 0 chr3 208114147 208114170 -19410408 + AT_rich Low_complexity Low_complexity 1 23 0 22 0 0 0 chr3 208115681 208115703 -19408875 + AT_rich Low_complexity Low_complexity 1 22 0 2369 100 7 0 chr3 208117152 208117462 -19407116 + AluSx SINE Alu 1 312 0 2177 167 95 4 chr3 208117885 208118358 -19406220 + Charlie1b DNA MER1_type 1 516 -7 2183 107 10 0 chr3 208119737 208120026 -19404552 + AluSx SINE Alu 2 293 -19 207 0 0 0 chr3 208120046 208120069 -19404509 + (T)n Simple_repeat Simple_repeat 1 23 0 408 97 0 0 chr3 208120179 208120241 -19404337 + MER53 DNA DNA 3 64 -125 * 1173 155 30 2 chr3 208120239 208120527 -19404051 + MER2 DNA MER2_type 5 345 0 602 91 101 0 chr3 208120537 208120636 -19403942 - MER53 DNA DNA -80 109 1 216 209 64 9 chr3 208120891 208121001 -19403577 + (TA)n Simple_repeat Simple_repeat 2 117 0 451 303 91 39 chr3 208121560 208121791 -19402787 - MIR SINE MIR 0 262 20 236 217 94 28 chr3 208121848 208121954 -19402624 - L1ME4a LINE L1 -2 6119 6007 189 352 14 14 chr3 208122101 208122172 -19402406 + MIR SINE MIR 40 110 -98 294 328 52 8 chr3 208122258 208122392 -19402186 + MER5A DNA MER1_type 47 186 -3 2609 45 10 0 chr3 208123695 208124003 -19400575 + AluY SINE Alu 1 311 0 2201 115 23 0 chr3 208124902 208125206 -19399372 - AluSx SINE Alu -1 311 1 362 245 213 19 chr3 208125400 208125555 -19399023 - MER5A DNA MER1_type -1 188 4 498 227 70 41 chr3 208125622 208125794 -19398784 + MER5B DNA MER1_type 2 178 0 330 283 115 18 chr3 208125798 208125911 -19398667 + MIR SINE MIR 23 146 -62 285 29 0 0 chr3 208126055 208126113 -19398465 + (TG)n Simple_repeat Simple_repeat 1 92 0 285 29 0 0 chr3 208126113 208126147 -19398431 + (TG)n Simple_repeat Simple_repeat 1 34 0 357 269 119 5 chr3 208127323 208127524 -19397054 - L1ME4a LINE L1 -206 5915 5692 219 282 40 73 chr3 208128194 208128318 -19396260 + MIR SINE MIR 118 237 -25 1935 130 3 42 chr3 208128402 208128564 -19396014 - AluSx SINE Alu -16 296 150 2735 26 0 0 chr3 208128564 208128875 -19395703 - AluYb8 SINE Alu -7 311 1 1935 130 3 42 chr3 208128875 208129020 -19395558 - AluSx SINE Alu -162 150 1 976 251 18 4 chr3 208129187 208129414 -19395164 - MIR SINE MIR -31 231 2 193 333 0 0 chr3 208130050 208130098 -19394480 + L2 LINE L2 3208 3255 -17 2188 106 3 0 chr3 208130203 208130495 -19394083 + AluSx SINE Alu 2 294 -18 5436 47 12 0 chr3 208130973 208131638 -19392940 + L1PA7 LINE L1 5471 6143 -11 51 17 0 0 chr3 208131640 208131698 -19392880 + AT_rich Low_complexity Low_complexity 1 58 0 335 250 54 20 chr3 208131702 208131850 -19392728 - L1ME4a LINE L1 -3 6118 5966 750 200 26 26 chr3 208131900 208132090 -19392488 - MER106A DNA MER1_type -46 190 1 866 238 39 12 chr3 208132244 208132534 -19392044 - L1ME4a LINE L1 -331 5790 5522 204 333 175 0 chr3 208132996 208133059 -19391519 + L2 LINE L2 3191 3264 -8 28 79 0 0 chr3 208133117 208133180 -19391398 + AT_rich Low_complexity Low_complexity 1 63 0 3497 87 5 48 chr3 208133180 208133741 -19390837 - L1MA3 LINE L1 0 6305 5769 898 137 20 14 chr3 208133743 208133889 -19390689 - FRAM SINE Alu -11 165 19 248 160 0 0 chr3 208133931 208133981 -19390597 - Alu SINE Alu 0 302 253 435 84 0 15 chr3 208133981 208134057 -19390521 - L1P5 LINE L1 -374 5780 5706 192 219 49 0 chr3 208135298 208135339 -19389239 - L2 LINE L2 -15 3257 3215 412 307 20 7 chr3 208136712 208136865 -19387713 + L1ME4a LINE L1 5963 6117 -4 351 348 96 6 chr3 208137761 208137939 -19386639 + MIR SINE MIR 8 201 -61 230 304 7 7 chr3 208138155 208138290 -19386288 + L1ME LINE L1 5739 5873 -248 283 198 0 93 chr3 208138634 208138720 -19385858 + MIR3 SINE MIR 83 160 -48 28 0 0 0 chr3 208138947 208138975 -19385603 + AT_rich Low_complexity Low_complexity 1 28 0 228 35 0 0 chr3 208139264 208139293 -19385285 + (CAAAC)n Simple_repeat Simple_repeat 2 30 0 2394 88 3 3 chr3 208139323 208139629 -19384949 + AluSp SINE Alu 1 306 -7 551 338 202 4 chr3 208139814 208140358 -19384220 + L3 LINE CR1 921 1572 -5 415 316 142 0 chr3 208140538 208140728 -19383850 + MIR SINE MIR 1 217 -45 190 290 0 43 chr3 208141891 208141960 -19382618 - MIR SINE MIR -144 118 53 1188 273 75 27 chr3 208142081 208142521 -19382057 + MLT1G1 LTR MaLR 135 595 0 1636 152 51 82 chr3 208142755 208143216 -19381362 + MER31B LTR ERV1 19 543 0 265 266 138 2 chr3 208143258 208143434 -19381144 + MER102b DNA MER1_type 102 341 0 347 226 57 9 chr3 208143443 208143549 -19381029 + MER103 DNA DNA 48 158 -8 276 30 0 0 chr3 208143557 208143590 -19380988 + (TG)n Simple_repeat Simple_repeat 2 34 0 688 276 114 5 chr3 208144291 208144501 -19380077 + MIR SINE MIR 11 243 -19 2299 75 6 62 chr3 208144672 208144994 -19379584 - AluSq SINE Alu -9 304 1 2232 90 3 20 chr3 208145935 208146235 -19378343 + AluSg1 SINE Alu 1 295 -14 616 312 85 56 chr3 208146369 208147131 -19377447 - L2 LINE L2 0 3272 2471 270 95 0 0 chr3 208147135 208147177 -19377401 + (GA)n Simple_repeat Simple_repeat 2 43 0 894 194 0 2 chr3 208147207 208147816 -19376762 + (CCTA)n Simple_repeat Simple_repeat 1 608 0 200 316 158 13 chr3 208147988 208148140 -19376438 - L2 LINE L2 -638 2676 2503 348 291 23 0 chr3 208148232 208148318 -19376260 - MIR SINE MIR -102 106 19 24 32 0 0 chr3 208148739 208148770 -19375808 + AT_rich Low_complexity Low_complexity 1 31 0 1567 179 4 22 chr3 208148771 208149039 -19375539 - AluJo SINE Alu -49 263 1 874 222 44 79 chr3 208149683 208149998 -19374580 + MLT1C LTR MaLR 1 304 -163 198 359 0 13 chr3 208150105 208150183 -19374395 + MIR SINE MIR 38 114 -94 308 336 80 7 chr3 208150888 208151025 -19373553 - L1ME4a LINE L1 -26 6095 5949 481 305 52 0 chr3 208151055 208151209 -19373369 + MIR SINE MIR 93 254 -8 860 132 108 6 chr3 208151293 208151460 -19373118 + LTR54 LTR ERV1 18 201 -309 717 160 16 48 chr3 208151453 208151641 -19372937 + LTR54 LTR ERV1 329 510 0 * 2725 215 46 64 chr3 208151678 208152510 -19372068 + MER57-int LTR ERV1 3365 4181 -690 1379 213 53 18 chr3 208152553 208152920 -19371658 + MER57-int LTR ERV1 4170 6949 -569 21 0 0 0 chr3 208153742 208153763 -19370815 + AT_rich Low_complexity Low_complexity 1 21 0 1550 289 166 34 chr3 208154582 208155061 -19369517 - L2 LINE L2 -42 3271 2857 207 0 0 0 chr3 208155061 208155084 -19369494 + (TG)n Simple_repeat Simple_repeat 2 24 0 2206 132 0 0 chr3 208155084 208155388 -19369190 - AluSq SINE Alu -9 304 1 1550 289 166 34 chr3 208155388 208156007 -19368571 - L2 LINE L2 -455 2858 2042 334 326 51 87 chr3 208156088 208156536 -19368042 + L2 LINE L2 2841 3272 0 21 0 0 0 chr3 208157323 208157344 -19367234 + AT_rich Low_complexity Low_complexity 1 21 0 38 0 0 0 chr3 208157408 208157446 -19367132 + AT_rich Low_complexity Low_complexity 1 38 0 392 343 7 7 chr3 208157909 208158055 -19366523 + L3b LINE CR1 1333 1478 -105 458 231 81 87 chr3 208158079 208158131 -19366447 - MIR3 SINE MIR 0 208 157 723 220 17 6 chr3 208158131 208158304 -19366274 + MER5B DNA MER1_type 1 175 -3 458 231 81 87 chr3 208158304 208158424 -19366154 - MIR3 SINE MIR -51 157 37 263 203 91 77 chr3 208158473 208158616 -19365962 - L1ME4a LINE L1 -12 6109 5965 2556 49 0 7 chr3 208159446 208159751 -19364827 + AluY SINE Alu 1 303 -8 229 284 59 20 chr3 208160573 208160675 -19363903 + MIR3 SINE MIR 50 155 -53 2273 97 0 0 chr3 208160787 208161085 -19363493 + AluSx SINE Alu 1 298 -14 1636 131 45 0 chr3 208161107 208161397 -19363181 - L1MA4 LINE L1 -5 6295 5993 2215 181 6 52 chr3 208161400 208161880 -19362698 + MLT2B1 LTR ERVL 1 458 -62 189 175 0 0 chr3 208161917 208161957 -19362621 + CT-rich Low_complexity Low_complexity 1 40 0 207 0 0 0 chr3 208161959 208161982 -19362596 + (TG)n Simple_repeat Simple_repeat 2 24 0 204 40 0 0 chr3 208161981 208162006 -19362572 + (TA)n Simple_repeat Simple_repeat 2 26 0 * 355 259 0 0 chr3 208162099 208162211 -19362367 + (TA)n Simple_repeat Simple_repeat 2 113 0 307 112 0 9 chr3 208162214 208162269 -19362309 + MLT2B2 LTR ERVL 403 515 0 1310 176 60 30 chr3 208162600 208162867 -19361711 - AluJb SINE Alu -8 304 30 25 0 0 0 chr3 208162867 208162892 -19361686 + AT_rich Low_complexity Low_complexity 1 25 0 1948 170 3 6 chr3 208163168 208163480 -19361098 + AluJb SINE Alu 1 311 -1 190 77 0 0 chr3 208163579 208163605 -19360973 - MIR3 SINE MIR -14 194 169 26 30 0 0 chr3 208164222 208164255 -19360323 + AT_rich Low_complexity Low_complexity 1 33 0 187 286 0 36 chr3 208164310 208164366 -19360212 - MIR3 SINE MIR -42 166 113 2242 117 7 0 chr3 208165026 208165326 -19359252 - AluSq SINE Alu -11 302 1 1729 168 82 9 chr3 208166065 208166405 -19358173 - MLT1A1 LTR MaLR 0 365 1 1199 203 34 13 chr3 208166933 208167428 -19357150 - MLT1F1 LTR MaLR -5 562 1 325 278 72 0 chr3 208168082 208168179 -19356399 + L2 LINE L2 3162 3265 -7 1493 190 0 4 chr3 208168641 208168962 -19355616 - AluJb SINE Alu 0 370 51 307 133 0 0 chr3 208168962 208169007 -19355571 + AluJb SINE Alu 72 116 -186 852 299 100 42 chr3 208169616 208170095 -19354483 - L2 LINE L2 0 3313 2807 317 264 33 8 chr3 208170363 208170484 -19354094 - L1ME4a LINE L1 -9 6112 5989 1919 163 33 28 chr3 208170493 208170856 -19353722 + MLT1A1 LTR MaLR 1 365 0 244 284 119 0 chr3 208170869 208170936 -19353642 + MIR SINE MIR 5 79 -183 435 287 20 7 chr3 208171013 208171163 -19353415 + MIR SINE MIR 110 261 -1 232 289 82 21 chr3 208171371 208171468 -19353110 - L1ME4a LINE L1 -452 5669 5567 217 261 31 31 chr3 208171784 208171849 -19352729 - MIR3 SINE MIR -52 156 92 194 373 27 0 chr3 208171897 208171972 -19352606 + L2 LINE L2 3235 3311 -2 251 293 49 0 chr3 208172032 208172114 -19352464 - MIR SINE MIR -79 129 44 757 315 27 27 chr3 208172167 208172462 -19352116 + L3 LINE CR1 1278 1572 -5 203 261 14 0 chr3 208173299 208173368 -19351210 + CT-rich Low_complexity Low_complexity 3 72 0 184 323 97 0 chr3 208173557 208173619 -19350959 - L2 LINE L2 -38 3275 3208 353 282 21 28 chr3 208173619 208173761 -19350817 - MER117 DNA MER1_type -56 141 1 327 290 221 21 chr3 208174267 208174412 -19350166 - MER5B DNA MER1_type 0 178 5 21 36 0 0 chr3 208174776 208174804 -19349774 + AT_rich Low_complexity Low_complexity 1 28 0 230 286 95 63 chr3 208175016 208175142 -19349436 + L2 LINE L2 3159 3288 -25 518 230 118 12 chr3 208175307 208175468 -19349110 + MER5B DNA MER1_type 1 178 0 710 281 118 0 chr3 208175595 208175798 -19348780 - MIR SINE MIR -34 228 2 229 157 57 86 chr3 208176044 208176114 -19348464 + L2 LINE L2 3237 3304 -9 912 203 107 34 chr3 208176836 208177186 -19347392 - MLT1C LTR MaLR 0 467 100 404 262 21 47 chr3 208177337 208177528 -19347050 + LTR37B LTR ERV1 206 391 -77 5519 154 21 9 chr3 208177576 208178735 -19345843 + L1MA8 LINE L1 4479 5665 -626 2377 96 48 20 chr3 208178735 208179089 -19345489 + THE1B LTR MaLR 1 364 0 5519 154 21 9 chr3 208179089 208179722 -19344856 + L1MA8 LINE L1 5665 6288 -3 886 224 16 6 chr3 208180581 208180764 -19343814 - MER5A DNA MER1_type 0 189 5 498 246 172 43 chr3 208181234 208181466 -19343112 + MIR SINE MIR 1 262 0 2324 106 0 3 chr3 208181642 208181954 -19342624 + AluSx SINE Alu 1 311 -1 214 250 16 0 chr3 208182345 208182409 -19342169 + CT-rich Low_complexity Low_complexity 4 68 0 931 129 8 0 chr3 208182947 208183079 -19341499 - FLAM_C SINE Alu 0 133 1 360 282 118 18 chr3 208183080 208183250 -19341328 + MIR SINE MIR 20 206 -56 2614 120 139 30 chr3 208183386 208183919 -19340659 + LTR49 LTR ERV1 1 591 -4 717 170 129 23 chr3 208184408 208184579 -19339999 + LTR48 LTR ERV1 1 189 -598 747 178 0 0 chr3 208184800 208184929 -19339649 + MER57A LTR ERV1 29 157 -246 * 959 204 60 40 chr3 208184928 208184949 -19339629 + LTR48 LTR ERV1 483 502 -285 2977 138 44 38 chr3 208184949 208185476 -19339102 + LTR26B LTR ERV1 1 530 -1 959 204 60 40 chr3 208185476 208185753 -19338825 + LTR48 LTR ERV1 502 787 0 2135 136 7 0 chr3 208186000 208186302 -19338276 - AluSx SINE Alu -8 304 1 2034 160 13 11 chr3 208186426 208186782 -19337796 + MER57A LTR ERV1 29 388 -15 1818 163 10 0 chr3 208186782 208187083 -19337495 - AluJb SINE Alu -8 304 1 2034 160 13 11 chr3 208187083 208187100 -19337478 + MER57A LTR ERV1 388 403 0 460 284 93 12 chr3 208188012 208188174 -19336404 + MIR SINE MIR 44 218 -44 348 301 99 24 chr3 208188527 208188740 -19335838 + MIR SINE MIR 34 262 0 195 129 0 0 chr3 208189026 208189057 -19335521 + (CATATA)n Simple_repeat Simple_repeat 2 32 0 300 27 0 0 chr3 208189626 208189663 -19334915 + (T)n Simple_repeat Simple_repeat 1 37 0 22 56 0 0 chr3 208189919 208189955 -19334623 + AT_rich Low_complexity Low_complexity 1 36 0 266 282 17 68 chr3 208191030 208191111 -19333467 + MIR3 SINE MIR 67 142 -66 2013 130 0 13 chr3 208191111 208191410 -19333168 + AluSx SINE Alu 1 295 -17 266 282 17 68 chr3 208191410 208191445 -19333133 + MIR3 SINE MIR 142 177 -31 2363 142 39 11 chr3 208191465 208191727 -19332851 - L1MB4 LINE L1 -8 6172 5890 1861 103 144 16 chr3 208191727 208192047 -19332531 - MER46B DNA MER2_type 0 236 1 2363 142 39 11 chr3 208192047 208192243 -19332335 - L1MB4 LINE L1 -290 5890 5701 1963 156 3 0 chr3 208192366 208192654 -19331924 - AluJo SINE Alu -19 293 5 463 331 48 20 chr3 208192838 208193089 -19331489 + L2 LINE L2 2142 2399 -915 180 346 92 32 chr3 208193220 208193437 -19331141 + L2 LINE L2 2634 2863 -451 538 339 41 82 chr3 208193537 208193879 -19330699 + L2 LINE L2 2945 3272 0 183 305 95 9 chr3 208193890 208193995 -19330583 - MIR SINE MIR -19 243 130 332 341 159 13 chr3 208194177 208194403 -19330175 + MIR SINE MIR 4 262 0 265 392 88 11 chr3 208194446 208194627 -19329951 + L2 LINE L2 3078 3272 0 656 224 123 0 chr3 208196322 208196492 -19328086 + MIR SINE MIR 61 251 -11 1307 162 124 45 chr3 208197710 208197975 -19326603 + AluJo SINE Alu 6 291 -21 201 195 0 0 chr3 208198024 208198065 -19326513 + (TG)n Simple_repeat Simple_repeat 1 41 0 2332 82 3 3 chr3 208198402 208198694 -19325884 + AluSp SINE Alu 1 292 -21 433 299 79 0 chr3 208198925 208199052 -19325526 - MIR SINE MIR -49 213 77 1761 188 45 22 chr3 208199052 208199504 -19325074 + MLT1D LTR MaLR 1 505 0 24 96 0 0 chr3 208199866 208199939 -19324639 + AT_rich Low_complexity Low_complexity 1 73 0 1432 207 67 71 chr3 208200117 208200265 -19324313 + MLT1C LTR MaLR 35 182 -285 2302 101 0 0 chr3 208200265 208200562 -19324016 + AluY SINE Alu 1 297 -14 1432 207 67 71 chr3 208200562 208200848 -19323730 + MLT1C LTR MaLR 182 467 0 425 271 171 18 chr3 208201397 208201567 -19323011 - MIR SINE MIR -41 221 26 205 232 14 72 chr3 208201951 208202020 -19322558 - L2 LINE L2 0 3313 3249 201 39 0 0 chr3 208202788 208202814 -19321764 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 1747 157 15 55 chr3 208203652 208203977 -19320601 - AluJo SINE Alu 0 312 1 25 0 0 0 chr3 208204655 208204680 -19319898 + AT_rich Low_complexity Low_complexity 1 25 0 25 0 0 0 chr3 208205860 208205885 -19318693 + AT_rich Low_complexity Low_complexity 1 25 0 221 304 94 89 chr3 208207175 208207366 -19317212 + L2 LINE L2 2987 3178 -94 764 171 0 0 chr3 208208840 208208963 -19315615 - FLAM_A SINE Alu -10 123 1 1291 148 80 55 chr3 208209960 208210271 -19314307 - MER33 DNA MER1_type -5 319 1 25 65 0 0 chr3 208211928 208211974 -19312604 + AT_rich Low_complexity Low_complexity 1 46 0 221 197 15 0 chr3 208213907 208213973 -19310605 + (TA)n Simple_repeat Simple_repeat 2 68 0 23 33 0 0 chr3 208215235 208215265 -19309313 + AT_rich Low_complexity Low_complexity 1 30 0 203 0 37 0 chr3 208215441 208215468 -19309110 + (CAAAAA)n Simple_repeat Simple_repeat 3 30 0 399 304 83 9 chr3 208216967 208217184 -19307394 - MIR SINE MIR -28 234 2 34 0 0 0 chr3 208217949 208217983 -19306595 + AT_rich Low_complexity Low_complexity 1 34 0 1695 182 0 29 chr3 208218116 208218429 -19306149 - AluJb SINE Alu -7 305 2 937 182 74 56 chr3 208219433 208219702 -19304876 + ORSL DNA AcHobo 1 274 -1 2331 36 50 4 chr3 208220178 208220459 -19304119 - AluY SINE Alu -17 294 1 238 276 55 102 chr3 208220696 208220823 -19303755 + L2 LINE L2 3139 3259 -13 21 0 0 0 chr3 208221030 208221051 -19303527 + AT_rich Low_complexity Low_complexity 1 21 0 1765 168 17 7 chr3 208222212 208222509 -19302069 - AluJo SINE Alu -7 305 6 408 343 46 14 chr3 208223289 208223372 -19301206 + MIR SINE MIR 33 112 -150 3427 41 2 0 chr3 208223372 208223788 -19300790 - L1PA4 LINE L1 -3 6152 5736 408 343 46 14 chr3 208223788 208223923 -19300655 + MIR SINE MIR 112 258 -4 520 264 78 12 chr3 208223992 208224159 -19300419 - L1ME3A LINE L1 -296 5874 5697 2216 138 10 40 chr3 208224497 208224895 -19299683 + MLT1B LTR MaLR 1 386 -4 224 210 143 92 chr3 208226300 208226419 -19298159 + MIR SINE MIR 82 206 -56 222 333 55 65 chr3 208229165 208229366 -19295212 + L2 LINE L2 2837 3035 -237 356 271 35 0 chr3 208230002 208230087 -19294491 + L2 LINE L2 3220 3307 -6 322 244 67 25 chr3 208230829 208230948 -19293630 - MIR SINE MIR -72 190 67 790 256 76 32 chr3 208230967 208231048 -19293530 - MIR SINE MIR 0 262 186 6921 136 19 34 chr3 208231048 208231578 -19293000 - Tigger3b DNA MER2_type -1797 1231 695 2099 134 0 0 chr3 208231578 208231869 -19292709 - AluSx SINE Alu -21 291 1 6921 136 19 34 chr3 208231869 208232557 -19292021 - Tigger3b DNA MER2_type -2333 695 29 2247 83 3 30 chr3 208232557 208232858 -19291720 - AluSp SINE Alu -20 293 1 6921 136 19 34 chr3 208232858 208232887 -19291691 - Tigger3b DNA MER2_type -2999 29 1 790 256 76 32 chr3 208232887 208233055 -19291523 - MIR SINE MIR -76 186 2 197 342 0 53 chr3 208233244 208233320 -19291258 - MIR SINE MIR -171 91 20 317 284 119 15 chr3 208233444 208233578 -19291000 + MIR SINE MIR 28 175 -87 2256 108 0 0 chr3 208234612 208234900 -19289678 - AluSx SINE Alu -22 290 3 240 250 83 52 chr3 208235458 208235554 -19289024 - MIR SINE MIR -79 183 85 395 318 9 0 chr3 208235616 208235726 -19288852 + L2 LINE L2 3199 3309 -4 236 349 66 9 chr3 208237077 208237183 -19287395 - L2 LINE L2 -40 3232 3121 2119 112 6 19 chr3 208237341 208237654 -19286924 - AluSx SINE Alu -3 309 1 415 141 106 0 chr3 208238002 208238087 -19286491 - MLT1A1 LTR MaLR -271 94 1 238 322 33 8 chr3 208238096 208238217 -19286361 + L1ME4a LINE L1 5989 6112 -9 705 305 107 48 chr3 208238486 208238965 -19285613 + L2 LINE L2 2807 3313 0 2516 59 0 7 chr3 208239270 208239574 -19285004 + AluY SINE Alu 1 302 -9 787 235 22 33 chr3 208239693 208239876 -19284702 + MER5A DNA MER1_type 7 187 -2 513 343 65 10 chr3 208239878 208240079 -19284499 + MIR SINE MIR 9 220 -42 523 283 134 38 chr3 208241471 208241917 -19282661 - L1MC4a LINE L1 -1638 6170 5682 848 261 220 34 chr3 208242244 208243052 -19281526 + L2 LINE L2 2361 3313 0 212 279 116 78 chr3 208243204 208243333 -19281245 + MIR3 SINE MIR 36 169 -39 350 294 210 35 chr3 208243345 208243712 -19280866 - L2 LINE L2 0 3272 2842 923 216 103 35 chr3 208243719 208244001 -19280577 + MER5C DNA MER1_type 3 303 -21 461 199 96 7 chr3 208244153 208244289 -19280289 - Charlie5 DNA MER1_type -101 2511 2364 284 189 0 133 chr3 208245720 208245810 -19278768 - MER116 DNA Mariner 0 80 3 976 210 11 5 chr3 208246274 208246460 -19278118 + MER5A DNA MER1_type 3 189 0 357 331 79 22 chr3 208247159 208247298 -19277280 + L2 LINE L2 3126 3272 0 543 299 16 22 chr3 208247539 208247723 -19276855 - MIR3 SINE MIR -10 198 16 405 306 169 23 chr3 208248055 208248620 -19275958 + L1ME4a LINE L1 5391 6045 -76 2336 123 36 19 chr3 208248993 208249407 -19275171 - L1MA8 LINE L1 -6 6285 5865 241 261 0 0 chr3 208249902 208249967 -19274611 - L2 LINE L2 -407 2907 2843 205 143 0 0 chr3 208249960 208249995 -19274583 + L2 LINE L2 3278 3312 -1 * 347 234 159 0 chr3 208250040 208250147 -19274431 - MER5A DNA MER1_type -65 124 1 532 312 56 35 chr3 208250640 208250871 -19273707 - MIR SINE MIR -6 256 21 311 257 109 47 chr3 208251418 208251694 -19272884 + L1ME4a LINE L1 5815 6107 -14 330 216 39 29 chr3 208251738 208251840 -19272738 + L1ME4a LINE L1 6014 6116 -5 1300 182 106 88 chr3 208251922 208252356 -19272222 + MSTB2 LTR MaLR 16 457 0 232 209 282 0 chr3 208252625 208252735 -19271843 + MIR SINE MIR 122 262 0 873 165 9 61 chr3 208253485 208253697 -19270881 + L1MC3 LINE L1 7585 7785 0 257 177 65 16 chr3 208254099 208254161 -19270417 + MIR SINE MIR 81 145 -117 225 209 0 0 chr3 208254240 208254307 -19270271 + (CCA)n Simple_repeat Simple_repeat 3 69 0 543 200 150 8 chr3 208255556 208255676 -19268902 + MER5A DNA MER1_type 1 137 -52 22 0 0 0 chr3 208256291 208256313 -19268265 + AT_rich Low_complexity Low_complexity 1 22 0 198 266 0 0 chr3 208256527 208256606 -19267972 + GA-rich Low_complexity Low_complexity 2 80 0 242 313 16 70 chr3 208257195 208257323 -19267255 - L2 LINE L2 -14 3258 3138 736 203 238 0 chr3 208257440 208257696 -19266882 - L1MB4 LINE L1 -2 6178 5862 577 297 52 10 chr3 208257700 208257892 -19266686 - MIR SINE MIR -49 213 14 2382 81 10 0 chr3 208257996 208258303 -19266275 + AluSg SINE Alu 1 310 0 662 248 54 39 chr3 208259114 208259372 -19265206 + MIR SINE MIR 1 262 0 487 266 147 5 chr3 208260623 208260807 -19263771 + MIR SINE MIR 47 256 -6 306 328 39 16 chr3 208261066 208261194 -19263384 - MIR SINE MIR -57 151 21 466 276 86 6 chr3 208261602 208261765 -19262813 + MIR SINE MIR 11 186 -76 397 322 88 9 chr3 208261916 208262143 -19262435 - L3 LINE CR1 -54 1523 1279 283 378 70 13 chr3 208262449 208262605 -19261973 + MIR SINE MIR 32 196 -66 423 240 0 40 chr3 208262909 208263009 -19261569 + MER5B DNA MER1_type 80 175 -3 35 24 0 0 chr3 208263542 208263584 -19260994 + AT_rich Low_complexity Low_complexity 1 42 0 473 247 158 21 chr3 208263587 208263777 -19260801 - MIR SINE MIR 0 262 47 2454 75 0 0 chr3 208263963 208264258 -19260320 - AluY SINE Alu -16 295 1 26 30 0 0 chr3 208264403 208264436 -19260142 + AT_rich Low_complexity Low_complexity 1 33 0 303 319 64 0 chr3 208266042 208266136 -19258442 - L2 LINE L2 -13 3259 3160 2015 55 0 25 chr3 208266506 208266781 -19257797 + L1PA5 LINE L1 5887 6154 0 776 296 22 82 chr3 208267786 208268238 -19256340 + MLT1J LTR MaLR 42 466 -45 6333 81 6 0 chr3 208269047 208269953 -19254625 + L1P LINE L1 4446 5356 -790 274 309 20 23 chr3 208271146 208271274 -19253304 + MIR SINE MIR 2 127 -81 214 339 0 0 chr3 208271305 208271361 -19253217 + L2 LINE L2 3237 3292 -21 24 32 0 0 chr3 208271592 208271623 -19252955 + AT_rich Low_complexity Low_complexity 1 31 0 180 0 0 0 chr3 208271969 208271989 -19252589 + (T)n Simple_repeat Simple_repeat 1 20 0 269 321 118 9 chr3 208272606 208272736 -19251842 - MIR SINE MIR -64 144 23 315 290 37 0 chr3 208273526 208273633 -19250945 + L1ME4a LINE L1 5798 5908 -213 240 163 0 0 chr3 208274517 208274560 -19250018 + (CA)n Simple_repeat Simple_repeat 1 43 0 476 260 39 19 chr3 208274871 208275025 -19249553 + MIR SINE MIR 106 262 0 195 277 31 31 chr3 208275346 208275411 -19249167 - MER5A DNA MER1_type 0 189 125 963 96 0 0 chr3 208275411 208275546 -19249032 + AluY SINE Alu 177 311 0 395 125 164 32 chr3 208275562 208275677 -19248901 - MER5A DNA MER1_type -47 139 9 277 362 95 19 chr3 208275814 208276024 -19248554 + L2 LINE L2 3046 3271 -1 194 292 89 40 chr3 208276760 208276962 -19247616 - L2 LINE L2 -353 2961 2750 327 49 0 0 chr3 208277678 208277719 -19246859 + (TG)n Simple_repeat Simple_repeat 2 42 0 203 235 20 20 chr3 208279089 208279140 -19245438 + MIR3 SINE MIR 151 201 -7 249 323 164 0 chr3 208280059 208280260 -19244318 + Charlie8 DNA MER1_type 4 237 -2180 1899 112 3 117 chr3 208280441 208280826 -19243752 - L1PA15 LINE L1 -3 6162 5822 1788 148 0 0 chr3 208280825 208281243 -19243335 + L1P4 LINE L1 5030 5447 -718 * 576 281 89 13 chr3 208281311 208281535 -19243043 - MIR SINE MIR -12 250 10 447 308 34 7 chr3 208281857 208282003 -19242575 - MIR SINE MIR -70 192 43 346 250 62 55 chr3 208283711 208283839 -19240739 + MIR SINE MIR 18 146 -62 711 214 60 22 chr3 208284264 208284446 -19240132 + MER5A DNA MER1_type 1 189 0 23 33 0 0 chr3 208284962 208284992 -19239586 + AT_rich Low_complexity Low_complexity 1 30 0 342 61 0 0 chr3 208285185 208285234 -19239344 + (TG)n Simple_repeat Simple_repeat 2 50 0 22 56 0 0 chr3 208285834 208285870 -19238708 + AT_rich Low_complexity Low_complexity 1 36 0 22 0 0 0 chr3 208290008 208290030 -19234548 + AT_rich Low_complexity Low_complexity 1 22 0 1982 151 26 7 chr3 208291402 208291706 -19232872 + AluJo SINE Alu 1 310 -2 600 351 116 16 chr3 208292348 208292892 -19231686 - L2 LINE L2 -926 2388 1791 2195 105 0 38 chr3 208292912 208293225 -19231353 - AluSx SINE Alu -11 301 1 244 216 14 40 chr3 208295348 208295422 -19229156 - Charlie8 DNA MER1_type -1074 1343 1272 22 35 0 0 chr3 208296795 208296824 -19227754 + AT_rich Low_complexity Low_complexity 1 29 0 2116 100 64 0 chr3 208297247 208297528 -19227050 + AluSx SINE Alu 1 299 -13 510 335 71 15 chr3 208297638 208297907 -19226671 - L2 LINE L2 -421 2893 2610 186 260 0 0 chr3 208299607 208299680 -19224898 + (TA)n Simple_repeat Simple_repeat 2 74 0 22 0 0 0 chr3 208299792 208299814 -19224764 + AT_rich Low_complexity Low_complexity 1 22 0 867 246 52 0 chr3 208299884 208300075 -19224503 + Charlie1a DNA MER1_type 13 213 -1242 * 3657 197 45 32 chr3 208300072 208301072 -19223506 + Charlie1a DNA MER1_type 443 1455 0 232 275 115 55 chr3 208301310 208301492 -19223086 - MIR SINE MIR -50 212 20 203 311 0 16 chr3 208301647 208301708 -19222870 + MIR SINE MIR 175 234 -28 27 0 0 0 chr3 208302644 208302671 -19221907 + AT_rich Low_complexity Low_complexity 1 27 0 263 285 46 115 chr3 208302758 208302885 -19221693 - MIR3 SINE MIR -26 236 135 2724 23 0 0 chr3 208302885 208303189 -19221389 - AluY SINE Alu -7 304 1 263 285 46 115 chr3 208303189 208303314 -19221264 - MIR3 SINE MIR -127 135 3 853 262 49 9 chr3 208303470 208303695 -19220883 + MIR SINE MIR 19 252 -10 411 147 29 20 chr3 208303710 208303812 -19220766 + CT-rich Low_complexity Low_complexity 2 104 0 1967 111 44 4 chr3 208304605 208304923 -19219655 + AluSx SINE Alu 1 329 0 394 374 18 0 chr3 208306541 208306712 -19217866 + MIR3 SINE MIR 34 207 -1 1593 205 0 13 chr3 208306888 208307190 -19217388 - AluJb SINE Alu -14 298 1 550 319 25 20 chr3 208307221 208307425 -19217153 - MIR SINE MIR -7 255 51 458 268 7 72 chr3 208308748 208308886 -19215692 - MIR3 SINE MIR -23 185 57 186 250 77 0 chr3 208308949 208309001 -19215577 + L2 LINE L2 3210 3265 -7 196 250 58 0 chr3 208309117 208309169 -19215409 + L2 LINE L2 3258 3312 -1 432 82 0 0 chr3 208309348 208309409 -19215169 + (TATG)n Simple_repeat Simple_repeat 2 62 0 365 200 142 0 chr3 208309534 208309654 -19214924 - L1ME4a LINE L1 -11 6110 5974 335 266 8 8 chr3 208309676 208309804 -19214774 - L1ME4a LINE L1 -748 5430 5303 300 289 56 28 chr3 208309817 208309848 -19214730 - L1ME4a LINE L1 -185 5936 5907 1249 181 116 44 chr3 208309848 208309979 -19214599 + MER2 DNA MER2_type 1 121 -223 2169 122 0 13 chr3 208309979 208310291 -19214287 - AluSx SINE Alu -4 308 1 1249 181 116 44 chr3 208310291 208310479 -19214099 + MER2 DNA MER2_type 121 343 -1 300 289 56 28 chr3 208310479 208310589 -19213989 - L1ME4a LINE L1 -214 5907 5791 230 233 167 33 chr3 208310674 208310794 -19213784 + MLT1H LTR MaLR 406 541 -8 3073 64 15 2 chr3 208311103 208311496 -19213082 + MLT2A1 LTR ERVL 1 398 -46 308 47 0 0 chr3 208311504 208311547 -19213031 + MLT2A1 LTR ERVL 361 403 -41 535 116 5 68 chr3 208311569 208311759 -19212819 + (TA)n Simple_repeat Simple_repeat 1 178 0 45053 64 9 3 chr3 208311792 208317413 -19207165 + HERVL-A1-A1 LTR ERVL 1 5654 0 3184 52 5 15 chr3 208317413 208317821 -19206757 + MLT2A1 LTR ERVL 1 404 -40 25 0 0 0 chr3 208317821 208317846 -19206732 + AT_rich Low_complexity Low_complexity 1 25 0 345 111 0 0 chr3 208317859 208317913 -19206665 + MLT2A1 LTR ERVL 467 520 0 336 307 95 51 chr3 208318483 208319092 -19205486 - L1MC4a LINE L1 -1909 5899 5264 192 77 0 0 chr3 208319873 208319899 -19204679 + (A)n Simple_repeat Simple_repeat 1 26 0 24 0 0 0 chr3 208319972 208319996 -19204582 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 208320051 208320072 -19204506 + AT_rich Low_complexity Low_complexity 1 21 0 23 0 0 0 chr3 208320157 208320180 -19204398 + AT_rich Low_complexity Low_complexity 1 23 0 216 0 0 0 chr3 208321075 208321099 -19203479 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 352 314 32 20 chr3 208321107 208321278 -19203300 + MER5A DNA MER1_type 6 188 -1 21 0 0 0 chr3 208321489 208321510 -19203068 + AT_rich Low_complexity Low_complexity 1 21 0 1479 189 29 45 chr3 208321743 208321935 -19202643 - AluJo SINE Alu -4 308 121 2316 81 0 3 chr3 208321935 208322230 -19202348 + AluY SINE Alu 1 294 -17 1479 189 29 45 chr3 208322230 208322350 -19202228 - AluJo SINE Alu -191 121 1 24 85 0 0 chr3 208322827 208322886 -19201692 + AT_rich Low_complexity Low_complexity 1 59 0 2554 86 6 3 chr3 208323058 208323409 -19201169 - THE1A LTR MaLR 0 355 4 11126 97 7 22 chr3 208323412 208325017 -19199561 - THE1A-int LTR MaLR 0 1580 1 2650 79 3 6 chr3 208325017 208325373 -19199205 - THE1A LTR MaLR 0 355 1 727 143 0 60 chr3 208326048 208326181 -19198397 - FLAM_A SINE Alu 0 142 18 297 213 303 0 chr3 208326187 208326342 -19198236 + L2 LINE L2 3100 3301 -12 2176 92 0 7 chr3 208326420 208326726 -19197852 - AluY SINE Alu 0 304 1 699 111 0 9 chr3 208326728 208326836 -19197742 - FLAM_C SINE Alu -2 141 35 782 213 56 0 chr3 208326836 208326996 -19197582 + MER20 DNA MER1_type 51 219 0 181 200 0 0 chr3 208327457 208327492 -19197086 + MIR SINE MIR 47 81 -181 186 300 78 11 chr3 208330090 208330180 -19194398 + MIR SINE MIR 166 261 -1 296 196 76 0 chr3 208330294 208330386 -19194192 + L1ME4a LINE L1 6018 6116 -5 1634 36 36 0 chr3 208330740 208330959 -19193619 + AluY SINE Alu 70 296 -15 243 308 31 0 chr3 208331743 208331808 -19192770 + MIR SINE MIR 6 72 -190 21 0 0 0 chr3 208331827 208331848 -19192730 + AT_rich Low_complexity Low_complexity 1 21 0 239 345 110 28 chr3 208332145 208332290 -19192288 - MIR3 SINE MIR -14 194 38 230 143 43 29 chr3 208332317 208332387 -19192191 + (TATAA)n Simple_repeat Simple_repeat 5 75 0 210 37 0 0 chr3 208332571 208332598 -19191980 + (CCA)n Simple_repeat Simple_repeat 3 29 0 36 53 0 0 chr3 208334093 208334150 -19190428 + AT_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr3 208334696 208334724 -19189854 + AT_rich Low_complexity Low_complexity 1 28 0 297 238 0 0 chr3 208336471 208336542 -19188036 - MIR SINE MIR -86 122 52 430 352 57 11 chr3 208336970 208337146 -19187432 - MIR3 SINE MIR -6 202 19 553 344 81 26 chr3 208337373 208337754 -19186824 - L2 LINE L2 0 3272 2871 453 309 125 6 chr3 208337831 208337999 -19186579 - MER5A DNA MER1_type 0 189 2 215 224 129 98 chr3 208338049 208338304 -19186274 - L2 LINE L2 -838 2476 2214 213 336 180 8 chr3 208340078 208340200 -19184378 - L3 LINE CR1 -5 1572 1430 186 43 0 0 chr3 208340223 208340246 -19184332 + (CA)n Simple_repeat Simple_repeat 2 24 0 * 276 30 0 0 chr3 208340245 208340278 -19184300 + (GA)n Simple_repeat Simple_repeat 2 34 0 439 325 25 31 chr3 208340388 208340548 -19184030 + MER91A DNA MER1_type 8 166 -30 1970 91 3 35 chr3 208340730 208340821 -19183757 + AluY SINE Alu 30 122 -189 243 0 0 0 chr3 208340821 208340848 -19183730 + (TA)n Simple_repeat Simple_repeat 1 27 0 1970 91 3 35 chr3 208340848 208341043 -19183535 + AluY SINE Alu 122 307 -4 250 281 117 75 chr3 208341804 208342085 -19182493 - L2 LINE L2 0 3313 3021 441 306 38 29 chr3 208342325 208342534 -19182044 - MIR SINE MIR -44 218 8 195 42 0 0 chr3 208342603 208342627 -19181951 + (T)n Simple_repeat Simple_repeat 1 24 0 307 293 0 0 chr3 208342675 208342757 -19181821 + MIR3 SINE MIR 114 195 -13 453 323 83 48 chr3 208343346 208343587 -19180991 + LTR67 LTR ERVL 35 299 -258 198 0 0 0 chr3 208343587 208343609 -19180969 + (CAG)n Simple_repeat Simple_repeat 3 24 0 453 323 83 48 chr3 208343609 208343801 -19180777 + LTR67 LTR ERVL 299 483 -74 2436 229 59 61 chr3 208343801 208344726 -19179852 - L1MD3 LINE L1 0 8040 7132 494 273 14 28 chr3 208345080 208345223 -19179355 + MIR3 SINE MIR 37 177 -31 361 277 256 25 chr3 208345420 208345658 -19178920 + L3 LINE CR1 966 1258 -319 973 70 0 0 chr3 208345676 208345791 -19178787 - AluSq/x SINE Alu -188 125 11 28 79 0 0 chr3 208345851 208345914 -19178664 + AT_rich Low_complexity Low_complexity 1 63 0 421 227 197 1 chr3 208346175 208346304 -19178274 - MER5A DNA MER1_type -2 187 21 569 289 24 19 chr3 208346877 208347088 -19177490 - L3 LINE CR1 -229 1348 1137 1845 153 0 7 chr3 208349044 208349339 -19175239 + AluJb SINE Alu 1 293 -19 22 0 0 0 chr3 208351816 208351838 -19172740 + AT_rich Low_complexity Low_complexity 1 22 0 21 100 0 0 chr3 208353618 208353688 -19170890 + GC_rich Low_complexity Low_complexity 1 70 0 518 238 50 121 chr3 208353994 208354276 -19170302 + L2 LINE L2 3048 3309 -4 260 325 88 9 chr3 208354886 208355000 -19169578 + MIR SINE MIR 18 140 -68 266 239 149 34 chr3 208355105 208355264 -19169314 + MIR SINE MIR 20 190 -63 1349 191 30 4 chr3 208355717 208356026 -19168552 - MER93b LTR ERV1 0 373 80 631 215 152 6 chr3 208356126 208356284 -19168294 + MER5A DNA MER1_type 9 189 0 232 377 100 32 chr3 208357221 208357441 -19167137 + L2 LINE L2 2530 2764 -550 385 293 112 59 chr3 208357556 208357843 -19166735 + MLT1K LTR MaLR 79 380 -208 231 159 0 23 chr3 208357961 208358005 -19166573 + MLT1K LTR MaLR 546 588 0 1495 199 3 41 chr3 208358300 208358616 -19165962 - AluJo SINE Alu -8 304 1 7619 29 0 0 chr3 208358747 208360380 -19164198 + L1PA3 LINE L1 4558 6190 0 32 81 0 0 chr3 208360434 208360508 -19164070 + AT_rich Low_complexity Low_complexity 1 74 0 212 356 8 42 chr3 208360529 208360647 -19163931 - MIR3 SINE MIR -6 202 89 568 349 61 54 chr3 208361374 208362004 -19162574 + L2 LINE L2 2596 3232 -40 198 266 0 62 chr3 208362260 208362324 -19162254 - MIR SINE MIR -64 144 85 24 0 0 0 chr3 208362493 208362517 -19162061 + GC_rich Low_complexity Low_complexity 1 24 0 29 84 0 0 chr3 208362755 208362826 -19161752 + AT_rich Low_complexity Low_complexity 1 71 0 733 270 124 14 chr3 208362944 208363300 -19161278 + L1ME4a LINE L1 5491 5885 -236 251 188 0 43 chr3 208363326 208363395 -19161183 + (TATATG)n Simple_repeat Simple_repeat 2 67 0 4088 215 49 27 chr3 208367217 208368106 -19156472 - L1MC1 LINE L1 -485 6266 5398 1731 170 95 20 chr3 208368106 208368506 -19156072 + MSTB1 LTR MaLR 1 430 -2 4088 215 49 27 chr3 208368506 208369488 -19155090 - L1MC1 LINE L1 -1353 5398 4375 2389 214 21 21 chr3 208369516 208370158 -19154420 - L1MC1 LINE L1 -4851 1194 554 1844 154 154 16 chr3 208370158 208370534 -19154044 + MSTA LTR MaLR 1 428 0 9414 138 25 25 chr3 208370536 208372114 -19152464 + MSTA-int LTR MaLR 3 1580 0 1794 112 123 107 chr3 208372114 208372535 -19152043 + MSTA LTR MaLR 1 428 0 2389 214 21 21 chr3 208372535 208372629 -19151949 - L1MC1 LINE L1 -5372 673 581 295 284 15 0 chr3 208372635 208372702 -19151876 - MER2 DNA MER2_type 0 345 278 23 33 0 0 chr3 208372702 208372732 -19151846 + AT_rich Low_complexity Low_complexity 1 30 0 464 274 0 0 chr3 208372735 208372841 -19151737 + FLAM_A SINE Alu 1 106 -36 1041 184 0 51 chr3 208372856 208373073 -19151505 - MER2 DNA MER2_type -139 206 1 300 303 18 9 chr3 208373123 208373232 -19151346 - L1MC1 LINE L1 -5485 560 451 6771 136 10 7 chr3 208373363 208374717 -19149861 - L1MA2 LINE L1 -11 7712 6355 2104 79 0 28 chr3 208374724 208375015 -19149563 - AluY SINE Alu -1 310 28 1748 106 24 58 chr3 208375015 208375344 -19149234 - L1MA2 LINE L1 -4549 3016 2699 506 293 61 20 chr3 208375912 208376110 -19148468 + MIR SINE MIR 56 261 -1 4651 289 104 12 chr3 208376129 208376265 -19148313 + L2 LINE L2 1062 1184 -2129 1700 106 31 84 chr3 208376265 208376585 -19147993 + AluSx SINE Alu 8 310 -2 4651 289 104 12 chr3 208376585 208378444 -19146134 + L2 LINE L2 1184 3251 -62 346 211 19 0 chr3 208378445 208378549 -19146029 + (TA)n Simple_repeat Simple_repeat 2 107 0 237 355 83 18 chr3 208378914 208379083 -19145495 - MER5A DNA MER1_type 0 189 10 181 273 0 0 chr3 208380257 208380301 -19144277 - L2 LINE L2 -14 3299 3256 1407 231 34 12 chr3 208380913 208381352 -19143226 + L1ME3A LINE L1 5355 5864 -306 271 194 13 44 chr3 208381412 208381489 -19143089 + AluSp SINE Alu 136 189 -114 540 154 8 15 chr3 208381490 208381620 -19142958 + (TA)n Simple_repeat Simple_repeat 2 130 0 230 224 0 30 chr3 208381726 208381793 -19142785 + (TA)n Simple_repeat Simple_repeat 1 65 0 486 168 6 42 chr3 208381796 208381963 -19142615 + (CATATA)n Simple_repeat Simple_repeat 6 166 0 227 176 0 0 chr3 208381963 208381997 -19142581 - Alu SINE Alu -19 283 250 263 203 13 0 chr3 208382002 208382081 -19142497 + (TA)n Simple_repeat Simple_repeat 1 80 0 460 265 50 55 chr3 208382120 208382320 -19142258 + L1ME3A LINE L1 5944 6142 -28 274 192 0 14 chr3 208382387 208382460 -19142118 + L1ME4a LINE L1 6048 6119 -2 407 157 62 22 chr3 208382482 208382681 -19141897 + AluJb SINE Alu 1 295 -17 2349 47 7 0 chr3 208382681 208382978 -19141600 + L1PA4 LINE L1 5851 6149 -6 407 157 62 22 chr3 208382978 208382996 -19141582 + AluJb SINE Alu 295 311 -1 220 333 0 11 chr3 208383152 208383239 -19141339 + MER5B DNA MER1_type 90 175 -3 22 0 0 0 chr3 208384120 208384142 -19140436 + AT_rich Low_complexity Low_complexity 1 22 0 277 355 12 41 chr3 208384483 208384652 -19139926 - MIR3 SINE MIR -30 178 15 21 0 0 0 chr3 208384725 208384746 -19139832 + AT_rich Low_complexity Low_complexity 1 21 0 253 335 26 7 chr3 208385679 208385834 -19138744 + HAL1b LINE L1 327 484 -864 249 33 0 0 chr3 208386697 208386727 -19137851 + (A)n Simple_repeat Simple_repeat 1 30 0 25 0 0 0 chr3 208387381 208387406 -19137172 + AT_rich Low_complexity Low_complexity 1 25 0 436 277 19 94 chr3 208387463 208387622 -19136956 + MIR3 SINE MIR 44 190 -18 416 273 62 62 chr3 208388594 208388788 -19135790 + MIR SINE MIR 2 195 -67 2204 103 10 0 chr3 208389182 208389473 -19135105 + AluSc SINE Alu 1 294 -15 459 361 42 14 chr3 208389642 208389855 -19134723 - MIR SINE MIR -19 243 25 393 307 42 24 chr3 208390895 208391061 -19133517 - MIR SINE MIR -74 188 20 410 338 121 4 chr3 208391068 208391299 -19133279 + MIR SINE MIR 2 259 -3 582 265 50 64 chr3 208392997 208393216 -19131362 + MIR SINE MIR 12 227 -35 387 0 0 0 chr3 208394015 208394058 -19130520 + (CA)n Simple_repeat Simple_repeat 2 44 0 505 303 166 11 chr3 208394432 208394973 -19129605 - L1MC4a LINE L1 -1892 6711 6087 1976 139 0 7 chr3 208395003 208395290 -19129288 - AluSx SINE Alu -15 297 13 190 225 67 56 chr3 208395319 208395408 -19129170 - MIR SINE MIR -31 231 142 721 279 48 36 chr3 208395408 208395741 -19128837 - L1MC4a LINE L1 -2495 4446 4110 2960 119 0 8 chr3 208395753 208396222 -19128356 - L1PA5 LINE L1 -4 6150 5686 3675 54 6 4 chr3 208396426 208397140 -19127438 - L1PA5 LINE L1 -438 5716 4998 2806 231 38 58 chr3 208397123 208397976 -19126602 - L1MC4a LINE L1 -2821 4120 3295 * 2226 116 0 3 chr3 208397976 208398279 -19126299 - AluSx SINE Alu -10 302 1 2806 231 38 58 chr3 208398279 208398589 -19125989 - L1MC4a LINE L1 -3646 3295 2980 773 174 79 0 chr3 208398600 208398790 -19125788 - L1MA8 LINE L1 0 6291 6087 2132 259 78 35 chr3 208398790 208398968 -19125610 - L1MCc LINE L1 -4094 3028 2859 2529 116 5 13 chr3 208398968 208399346 -19125232 + THE1C LTR MaLR 1 375 0 2132 259 78 35 chr3 208399346 208400889 -19123689 - L1MCc LINE L1 -4263 2859 1124 13279 148 27 32 chr3 208400897 208401269 -19123309 + Tigger2 DNA MER2_type 4 377 -2341 23 33 0 0 chr3 208401269 208401299 -19123279 + AT_rich Low_complexity Low_complexity 1 30 0 13279 148 27 32 chr3 208401299 208403268 -19121310 + Tigger2 DNA MER2_type 377 2361 -357 1600 154 124 48 chr3 208403668 208404136 -19120442 - LTR10A LTR ERV1 -61 548 1 500 192 0 30 chr3 208404759 208404858 -19119720 + MER94 DNA DNA 1 96 -38 208 255 0 0 chr3 208404959 208405006 -19119572 + A-rich Low_complexity Low_complexity 5 51 0 193 333 0 0 chr3 208405359 208405416 -19119162 + MIR SINE MIR 204 260 -2 823 112 91 13 chr3 208405417 208405570 -19119008 + LTR7 LTR ERV1 1 213 -237 1186 159 36 110 chr3 208406123 208406432 -19118146 - MLT1C LTR MaLR -181 286 1 327 295 46 24 chr3 208406512 208406704 -19117874 + L1MDa LINE L1 1801 2092 -809 22 0 0 0 chr3 208406802 208406824 -19117754 + AT_rich Low_complexity Low_complexity 1 22 0 277 319 76 40 chr3 208407120 208407490 -19117088 + L1ME LINE L1 5291 5673 -448 489 17 0 0 chr3 208408152 208408210 -19116368 + (TG)n Simple_repeat Simple_repeat 2 59 0 189 0 0 0 chr3 208408743 208408764 -19115814 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 448 339 75 62 chr3 208409529 208410165 -19114413 + L2 LINE L2 2630 3272 0 222 171 0 0 chr3 208410253 208410294 -19114284 + (TA)n Simple_repeat Simple_repeat 2 42 0 420 330 103 26 chr3 208410635 208410868 -19113710 + MIR SINE MIR 11 261 -1 337 326 35 21 chr3 208410869 208411010 -19113568 - MIR3 SINE MIR -45 163 21 498 201 110 138 chr3 208412320 208412639 -19111939 + MLT1K LTR MaLR 278 587 -1 403 288 65 18 chr3 208413776 208413946 -19110632 - MER5B DNA MER1_type 0 178 1 1115 258 48 45 chr3 208414261 208414679 -19109899 - L1MEc LINE L1 -5941 455 37 234 283 104 0 chr3 208414680 208414786 -19109792 - L1MDa LINE L1 -3984 2556 2440 243 0 0 0 chr3 208415723 208415750 -19108828 + (TTTTG)n Simple_repeat Simple_repeat 4 30 0 392 302 51 47 chr3 208416227 208416442 -19108136 + MIR SINE MIR 33 248 -14 190 211 0 0 chr3 208416641 208416679 -19107899 - L2 LINE L2 0 3313 3276 35 54 0 0 chr3 208416680 208416736 -19107842 + AT_rich Low_complexity Low_complexity 1 56 0 5400 207 32 10 chr3 208417569 208418649 -19105929 + L1M1 LINE L1 338 1441 -6124 319 224 15 0 chr3 208419289 208419356 -19105222 - L2 LINE L2 0 3313 3246 181 298 0 18 chr3 208419419 208419476 -19105102 - MIR SINE MIR -157 105 50 557 210 28 7 chr3 208419648 208419791 -19104787 + L1MB8 LINE L1 6031 6176 -2 1520 252 25 38 chr3 208419807 208420280 -19104298 + L1MCb LINE L1 1 467 -5578 340 206 21 41 chr3 208420280 208420377 -19104201 + L1M1 LINE L1 16 110 -7455 559 228 95 47 chr3 208420482 208420693 -19103885 + MLT1A2 LTR MaLR 176 374 0 7480 220 53 31 chr3 208420693 208421662 -19102916 + MLT1A1-int LTR MaLR 1 1024 -711 2248 146 22 0 chr3 208421662 208422018 -19102560 + THE1B LTR MaLR 1 364 0 7480 220 53 31 chr3 208422018 208422746 -19101832 + MLT1A1-int LTR MaLR 1024 1735 0 1238 194 80 49 chr3 208422750 208423100 -19101478 + MLT1A1 LTR MaLR 5 365 0 909 226 92 17 chr3 208423100 208423480 -19101098 + L1MCb LINE L1 2052 2494 -4070 817 184 45 0 chr3 208423495 208423674 -19100904 - L1 LINE L1 -3090 4475 4289 333 68 0 0 chr3 208423684 208423728 -19100850 + (TA)n Simple_repeat Simple_repeat 2 45 0 6206 123 27 71 chr3 208423742 208424821 -19099757 - L1 LINE L1 -3690 3875 2874 5737 52 3 1 chr3 208424821 208425532 -19099046 + L1PA7 LINE L1 5438 6154 0 6206 123 27 71 chr3 208425532 208425890 -19098688 - L1 LINE L1 -4691 2874 2502 5788 120 1 0 chr3 208425891 208427303 -19097275 - L1PA14 LINE L1 -5 6156 4732 5906 178 11 10 chr3 208427305 208427555 -19097023 - L1PA14 LINE L1 -1344 4802 4554 1998 109 50 0 chr3 208427555 208427838 -19096740 - AluSg SINE Alu -13 297 1 5906 178 11 10 chr3 208427838 208428725 -19095853 - L1PA14 LINE L1 -1592 4554 3663 * 10479 192 35 49 chr3 208428719 208430908 -19093670 - L1 LINE L1 -5053 2512 607 537 16 0 0 chr3 208430908 208430970 -19093608 + (CA)n Simple_repeat Simple_repeat 2 63 0 10479 192 35 49 chr3 208430970 208431560 -19093018 - L1 LINE L1 -6958 607 10 353 211 13 0 chr3 208431583 208431659 -19092919 + MER116 DNA Mariner 1 77 -3 266 333 73 57 chr3 208432374 208432566 -19092012 + L2 LINE L2 2564 2758 -556 258 220 0 0 chr3 208432627 208432686 -19091892 + (CA)n Simple_repeat Simple_repeat 2 60 0 257 267 0 0 chr3 208432687 208432747 -19091831 + (TA)n Simple_repeat Simple_repeat 2 61 0 216 354 96 47 chr3 208432888 208433145 -19091433 + L2 LINE L2 2772 3036 -236 22 35 0 0 chr3 208434650 208434679 -19089899 + AT_rich Low_complexity Low_complexity 1 29 0 661 329 57 62 chr3 208434737 208435126 -19089452 + MLT1K LTR MaLR 13 399 -189 1505 233 20 17 chr3 208435128 208435497 -19089081 - MLT1A1 LTR MaLR 0 365 1 244 243 43 0 chr3 208435563 208435633 -19088945 + MLT1K LTR MaLR 485 557 -31 189 237 0 0 chr3 208435773 208435832 -19088746 + (TAAA)n Simple_repeat Simple_repeat 2 60 0 25 31 0 0 chr3 208436243 208436275 -19088303 + AT_rich Low_complexity Low_complexity 1 32 0 544 256 48 70 chr3 208436803 208437033 -19087545 - MIR SINE MIR -14 248 24 284 282 110 31 chr3 208437633 208437924 -19086654 + L1M2 LINE L1 4706 5019 -1127 4866 238 23 29 chr3 208437930 208439872 -19084706 + L1PA11 LINE L1 1 2980 -4594 8915 138 17 0 chr3 208439872 208442195 -19082383 + L1PA11 LINE L1 5287 7602 -10 860 274 69 47 chr3 208442252 208442873 -19081705 + L1M2 LINE L1 5075 5718 -582 24 32 0 0 chr3 208443089 208443120 -19081458 + AT_rich Low_complexity Low_complexity 1 31 0 273 180 33 16 chr3 208443120 208443181 -19081397 + L1MC5 LINE L1 5855 5916 -1892 418 268 49 103 chr3 208444301 208444525 -19080053 + LTR33A LTR ERVL 9 220 -303 254 260 83 0 chr3 208444863 208444959 -19079619 + LTR33A LTR ERVL 420 523 0 934 198 10 53 chr3 208445153 208445423 -19079155 + L1MC5 LINE L1 6994 7250 -728 515 246 162 34 chr3 208445575 208445982 -19078596 + L1MC5 LINE L1 7318 7776 -185 209 374 98 32 chr3 208446491 208446614 -19077964 + L2 LINE L2 3123 3253 -19 222 37 0 0 chr3 208446774 208446801 -19077777 + (TTTTTG)n Simple_repeat Simple_repeat 4 30 0 2629 23 7 0 chr3 208446977 208447287 -19077291 - L1PA2 LINE L1 -1 6154 5843 270 0 0 0 chr3 208447288 208447318 -19077260 + (A)n Simple_repeat Simple_repeat 1 30 0 5348 130 67 81 chr3 208497319 208498158 -19026420 - L1MCa LINE L1 -5054 1372 523 2061 132 9 9 chr3 208498158 208498477 -19026101 + L1MA4A LINE L1 5982 6300 -3 1635 166 34 20 chr3 208498481 208498777 -19025801 + AluJb SINE Alu 1 300 -12 5348 130 67 81 chr3 208498777 208499097 -19025481 - L1MCa LINE L1 -5906 520 224 2375 99 0 0 chr3 208500435 208500739 -19023839 + AluSx SINE Alu 1 304 -8 216 67 0 0 chr3 208500752 208500782 -19023796 + (A)n Simple_repeat Simple_repeat 1 30 0 408 309 127 38 chr3 208500784 208501153 -19023425 + L1M4 LINE L1 4693 5094 -1052 1827 144 0 33 chr3 208501350 208501656 -19022922 - AluJb SINE Alu -16 296 1 529 160 20 0 chr3 208501658 208501758 -19022820 - L1MC/D LINE L1 -667 5692 5591 1043 213 138 13 chr3 208501758 208502063 -19022515 + MER4B LTR ERV1 1 343 -267 253 326 92 20 chr3 208503203 208503301 -19021277 - L2 LINE L2 -27 3286 3182 256 167 76 15 chr3 208503423 208503489 -19021089 - MER5A DNA MER1_type -90 99 30 1510 218 56 76 chr3 208503496 208504231 -19020347 - MER61E LTR ERV1 -4 775 1 2397 59 0 0 chr3 208504349 208504635 -19019943 - AluY SINE Alu -23 288 3 336 259 27 0 chr3 208504691 208504803 -19019775 - MER103 DNA DNA -44 122 8 21 36 0 0 chr3 208505065 208505093 -19019485 + AT_rich Low_complexity Low_complexity 1 28 0 1282 193 53 54 chr3 208505716 208506314 -19018264 + LTR48 LTR ERV1 1 787 0 508 135 31 21 chr3 208506374 208506470 -19018108 + MER4A LTR ERV1 1 97 -567 * 1905 145 30 12 chr3 208506469 208506811 -19017767 + MER4A LTR ERV1 259 664 0 3477 130 30 11 chr3 208506902 208507028 -19017550 - MER34C LTR ERV1 -1 584 462 3290 148 9 0 chr3 208507028 208507554 -19017024 - LTR26B LTR ERV1 0 531 1 3477 130 30 11 chr3 208507554 208507995 -19016583 - MER34C LTR ERV1 -123 462 6 1901 119 0 0 chr3 208508433 208508686 -19015892 - AluSx SINE Alu -6 306 54 314 342 155 0 chr3 208509626 208509813 -19014765 - MIR SINE MIR -26 236 21 2605 157 17 5 chr3 208509912 208510333 -19014245 - MSTB LTR MaLR 0 426 1 324 245 0 43 chr3 208511039 208511140 -19013438 - MLT1L LTR MaLR -109 480 316 524 190 36 41 chr3 208511267 208511518 -19013060 - MLT1G LTR MaLR 0 555 198 386 276 30 117 chr3 208511626 208511890 -19012688 - MLT1-int LTR MaLR -24 1347 1107 501 306 0 0 chr3 208511926 208512047 -19012531 - MLT1G LTR MaLR -456 134 14 890 153 0 0 chr3 208512059 208512190 -19012388 - MSTB LTR MaLR -295 131 1 347 302 16 116 chr3 208512563 208512805 -19011773 - L2 LINE L2 -217 3055 2838 231 188 0 0 chr3 208513262 208513310 -19011268 + CT-rich Low_complexity Low_complexity 5 52 0 293 115 0 19 chr3 208513312 208513364 -19011214 + (TTCC)n Simple_repeat Simple_repeat 3 53 0 271 148 37 0 chr3 208514404 208514458 -19010120 - MLT1I LTR MaLR -19 390 335 * 700 294 107 3 chr3 208514456 208514765 -19009813 - MER20B DNA MER1_type -191 592 252 2813 170 39 57 chr3 208514918 208515552 -19009026 + L1MB3 LINE L1 5560 6182 -1 299 282 59 0 chr3 208515573 208515658 -19008920 - MER20B DNA MER1_type -693 90 1 188 0 74 0 chr3 208515662 208515689 -19008889 + (CAAA)n Simple_repeat Simple_repeat 2 30 0 912 251 34 66 chr3 208515820 208515985 -19008593 + L1MCc LINE L1 17 186 -6237 2050 115 0 77 chr3 208515985 208516323 -19008255 - AluSx SINE Alu 0 312 1 912 251 34 66 chr3 208516323 208516507 -19008071 + L1MCc LINE L1 186 355 -6068 303 285 7 49 chr3 208516968 208517112 -19007466 - HAL1b LINE L1 -629 719 582 775 264 91 0 chr3 208517647 208517878 -19006700 + MIR SINE MIR 6 257 -5 363 305 89 28 chr3 208518709 208519033 -19005545 + L1M4 LINE L1 2915 3232 -2914 2185 109 3 0 chr3 208519431 208519724 -19004854 - AluSp SINE Alu -19 294 1 30 27 0 0 chr3 208520649 208520686 -19003892 + AT_rich Low_complexity Low_complexity 1 37 0 4010 108 71 3 chr3 208520687 208521345 -19003233 - L1MA3 LINE L1 -1 6304 5602 1124 285 52 43 chr3 208521879 208522707 -19001871 + HAL1 LINE L1 824 1658 -849 335 291 80 65 chr3 208523464 208523739 -19000839 + HAL1 LINE L1 2225 2503 -4 28 0 0 0 chr3 208523961 208523989 -19000589 + AT_rich Low_complexity Low_complexity 1 28 0 508 274 52 0 chr3 208523993 208524128 -19000450 - MIR SINE MIR -32 230 89 467 252 25 25 chr3 208524237 208524356 -19000222 + MER63A DNA MER1_type 87 205 -5 218 129 0 0 chr3 208524357 208524388 -19000190 - MIR SINE MIR -201 61 31 1950 126 29 7 chr3 208524679 208524988 -18999590 + AluSp SINE Alu 2 316 0 276 274 81 39 chr3 208525721 208525993 -18998585 + L1M4 LINE L1 3663 3945 -2201 456 329 92 63 chr3 208526247 208526358 -18998220 - L2 LINE L2 -429 2885 2779 2249 108 3 3 chr3 208526358 208526665 -18997913 - AluSg SINE Alu -3 307 1 456 329 92 63 chr3 208526665 208526964 -18997614 - L2 LINE L2 -535 2779 2463 10588 168 17 12 chr3 208527023 208530289 -18994289 - L1MA5A LINE L1 -2 6937 3647 16002 198 34 54 chr3 208530289 208531203 -18993375 - L1PA16 LINE L1 -9 6860 5929 822 153 0 0 chr3 208531203 208531334 -18993244 - FLAM_C SINE Alu -2 131 1 16002 198 34 54 chr3 208531334 208532422 -18992156 - L1PA16 LINE L1 -940 5929 4821 791 11 0 0 chr3 208532422 208532513 -18992065 - 5S rRNA rRNA -30 91 1 16002 198 34 54 chr3 208532513 208537359 -18987219 - L1PA16 LINE L1 -2048 4821 1 1774 206 24 0 chr3 208537378 208537800 -18986778 - L1MA5A LINE L1 -3104 3684 3253 3598 71 2 6 chr3 208537816 208538294 -18986284 + L1PA5 LINE L1 5679 6154 0 230 0 0 32 chr3 208538313 208538344 -18986234 + (TTTA)n Simple_repeat Simple_repeat 3 32 0 5009 244 42 11 chr3 208538345 208540218 -18984360 - L1MA5A LINE L1 -4782 2007 2 240 308 46 29 chr3 208540221 208540502 -18984076 + L1P LINE L1 3983 4269 -1877 7106 16 0 4 chr3 208540606 208541425 -18983153 + L1PA3 LINE L1 5339 6154 -1 34 24 0 0 chr3 208541515 208541556 -18983022 + AT_rich Low_complexity Low_complexity 1 41 0 316 320 45 45 chr3 208541696 208541852 -18982726 + L1 LINE L1 4673 4828 -1318 545 233 31 78 chr3 208541925 208542118 -18982460 + HAL1 LINE L1 12 195 -2312 1229 276 73 55 chr3 208542158 208543002 -18981576 + HAL1 LINE L1 497 1356 -1151 379 288 84 58 chr3 208543501 208543692 -18980886 - HERV16 LTR ERVL -4800 196 1 1146 292 121 5 chr3 208543700 208544104 -18980474 - LTR16B LTR ERVL -13 451 1 767 347 85 36 chr3 208544292 208545010 -18979568 - L2 LINE L2 -337 2977 2225 408 291 25 31 chr3 208545091 208545287 -18979291 - L1ME LINE L1 -305 5816 5622 2140 129 0 3 chr3 208545396 208545705 -18978873 - AluSg SINE Alu -2 308 1 472 219 119 16 chr3 208546169 208546309 -18978269 - MLT1G1 LTR MaLR 0 590 395 1108 137 41 64 chr3 208546309 208546528 -18978050 - MER20 DNA MER1_type 0 219 6 922 278 131 29 chr3 208546516 208546898 -18977680 - MLT1G1 LTR MaLR -174 421 1 * 222 227 61 30 chr3 208546941 208547007 -18977571 + MIR SINE MIR 124 191 -71 379 323 81 53 chr3 208548234 208548556 -18976022 + L1ME4a LINE L1 5608 5938 -183 26 64 0 0 chr3 208548596 208548643 -18975935 + AT_rich Low_complexity Low_complexity 1 47 0 277 335 21 5 chr3 208548872 208549066 -18975512 - L1ME LINE L1 -297 5824 5628 352 342 143 13 chr3 208549070 208549140 -18975438 - L1ME LINE L1 -2220 5588 5528 2174 82 0 0 chr3 208549140 208549410 -18975168 + AluSx SINE Alu 37 306 -6 352 342 143 13 chr3 208549410 208549570 -18975008 - L1ME LINE L1 -2280 5528 5328 587 317 23 18 chr3 208550490 208550711 -18973867 + MIR SINE MIR 28 249 -13 296 161 16 0 chr3 208551120 208551182 -18973396 + GA-rich Low_complexity Low_complexity 4 66 0 257 289 311 0 chr3 208551755 208551890 -18972688 - MIR SINE MIR -40 222 46 654 162 7 14 chr3 208552154 208552302 -18972276 + CT-rich Low_complexity Low_complexity 2 148 0 281 293 61 24 chr3 208553712 208553876 -18970702 + Charlie8 DNA MER1_type 7 176 -2241 2250 97 3 16 chr3 208554990 208555298 -18969280 - AluSg SINE Alu -6 304 1 1092 178 136 74 chr3 208555961 208556394 -18968184 + LTR37B LTR ERV1 1 460 -8 510 285 62 7 chr3 208556807 208556951 -18967627 - MIR SINE MIR -109 153 2 189 403 56 0 chr3 208557597 208557669 -18966909 - L2 LINE L2 -47 3225 3150 2144 142 0 0 chr3 208557750 208558053 -18966525 + AluSx SINE Alu 1 303 -9 25 0 0 0 chr3 208558174 208558199 -18966379 + AT_rich Low_complexity Low_complexity 1 25 0 1096 272 185 18 chr3 208558621 208559113 -18965465 - MLT1K LTR MaLR -5 583 10 2136 107 10 0 chr3 208560208 208560499 -18964079 - AluSp SINE Alu -19 294 1 2407 72 10 0 chr3 208560732 208561037 -18963541 - AluY SINE Alu -3 308 1 312 284 64 0 chr3 208561169 208561278 -18963300 + MIR SINE MIR 47 162 -100 238 277 178 0 chr3 208561412 208561513 -18963065 + L2 LINE L2 3191 3309 -4 1650 219 61 11 chr3 208561549 208561993 -18962585 + MLT1C LTR MaLR 2 467 0 28 61 0 0 chr3 208563594 208563643 -18960935 + AT_rich Low_complexity Low_complexity 1 49 0 21 26 0 26 chr3 208563706 208563723 -18960855 + AT_rich Low_complexity Low_complexity 1 17 -21 2214 80 3 37 chr3 208563723 208564022 -18960556 - AluY SINE Alu -22 289 1 21 26 0 26 chr3 208564022 208564043 -18960535 + AT_rich Low_complexity Low_complexity 17 38 0 283 282 0 26 chr3 208564698 208564776 -18959802 - MIR SINE MIR -116 146 71 433 258 197 0 chr3 208564895 208565027 -18959551 - MER5A DNA MER1_type 0 189 32 370 309 47 66 chr3 208565495 208565691 -18958887 + MIR SINE MIR 3 206 -56 234 352 153 19 chr3 208566658 208567036 -18957542 + L2 LINE L2 943 1371 -1943 1890 193 23 13 chr3 208567171 208567555 -18957023 + MLT1B LTR MaLR 1 388 -2 275 237 134 10 chr3 208567646 208567743 -18956835 + L2 LINE L2 3112 3220 -93 396 0 0 0 chr3 208567799 208567843 -18956735 + (TG)n Simple_repeat Simple_repeat 2 45 0 1637 118 0 78 chr3 208567843 208568113 -18956465 - AluSx SINE Alu -28 284 36 269 320 0 0 chr3 208568286 208568364 -18956214 + L2 LINE L2 3235 3312 -1 1989 205 63 39 chr3 208568649 208569108 -18955470 + MLT2B1 LTR ERVL 51 520 0 570 171 143 11 chr3 208569372 208569547 -18955031 - L1MC5 LINE L1 -31 7930 7733 419 215 81 0 chr3 208569762 208569863 -18954715 + MIR SINE MIR 57 167 -41 515 338 25 3 chr3 208571777 208571956 -18952622 + MIR SINE MIR 22 206 -56 222 358 0 0 chr3 208571998 208572065 -18952513 + L2 LINE L2 3242 3308 -5 907 176 0 7 chr3 208572638 208572791 -18951787 - LTR32 LTR ERVL 0 471 320 2131 158 21 0 chr3 208572883 208573211 -18951367 - LTR32 LTR ERVL -122 349 15 15125 160 34 23 chr3 208573266 208574885 -18949693 + L1M1 LINE L1 15 1615 -6108 2276 135 5 16 chr3 208574885 208575264 -18949314 + THE1C LTR MaLR 1 375 0 15125 160 34 23 chr3 208575264 208575714 -18948864 + L1M1 LINE L1 1615 2059 -5664 2313 29 22 0 chr3 208575714 208575990 -18948588 + L1PA4 LINE L1 5866 6147 -8 15125 160 34 23 chr3 208575990 208576300 -18948278 + L1M1 LINE L1 2059 2364 -5359 363 44 0 0 chr3 208576300 208576345 -18948233 + (GA)n Simple_repeat Simple_repeat 2 46 0 15125 160 34 23 chr3 208576345 208576714 -18947864 + L1M1 LINE L1 2364 2727 -4996 2840 81 0 16 chr3 208576714 208577095 -18947483 + THE1C LTR MaLR 1 375 0 15125 160 34 23 chr3 208577095 208580966 -18943612 + L1M1 LINE L1 2727 7028 -695 5322 97 15 5 chr3 208580966 208581749 -18942829 + L1MA3 LINE L1 5511 6305 0 1020 234 108 3 chr3 208581757 208582082 -18942496 + MER113 DNA MER1_type? 98 456 -65 345 337 92 0 chr3 208582437 208582600 -18941978 + MIR SINE MIR 30 207 -55 1963 173 45 74 chr3 208585310 208585795 -18938783 - MLT1D LTR MaLR -34 471 1 534 267 30 18 chr3 208586656 208586821 -18937757 - MER69A DNA AcHobo -3 174 8 367 301 55 7 chr3 208587221 208587367 -18937211 + L3 LINE CR1 1424 1576 -1 370 234 39 0 chr3 208587626 208587703 -18936875 + L1MC1 LINE L1 21 100 -6326 312 224 40 0 chr3 208587700 208587776 -18936802 - L1MCa LINE L1 -6266 160 82 * 1721 163 161 12 chr3 208587776 208588199 -18936379 + L1MC1 LINE L1 1910 2395 -4031 7533 231 43 35 chr3 208588208 208588743 -18935835 + L1MC1 LINE L1 3221 3750 -2676 1502 218 14 16 chr3 208588743 208589106 -18935472 + MLT1A1 LTR MaLR 1 362 -3 7533 231 43 35 chr3 208589106 208590905 -18933673 + L1MC1 LINE L1 3750 5574 -852 3856 194 23 6 chr3 208590909 208591741 -18932837 - L1 LINE L1 -904 5242 4397 1541 220 42 24 chr3 208591749 208592131 -18932447 - L1 LINE L1 -2016 4130 3742 5230 148 25 12 chr3 208592134 208593049 -18931529 + L1MC1 LINE L1 5684 6610 -3 204 40 0 0 chr3 208593049 208593074 -18931504 + (CA)n Simple_repeat Simple_repeat 2 26 0 368 279 123 0 chr3 208593672 208593794 -18930784 - MIR SINE MIR -16 246 110 717 232 123 28 chr3 208593819 208594030 -18930548 - MIR SINE MIR -27 235 5 185 289 186 31 chr3 208594247 208594344 -18930234 + L2 LINE L2 3156 3267 -5 402 277 122 14 chr3 208594902 208595050 -18929528 + MIR SINE MIR 25 188 -74 275 273 230 43 chr3 208595453 208595614 -18928964 - L2 LINE L2 -11 3261 3071 2569 136 9 27 chr3 208598080 208598522 -18926056 + MER61C LTR ERV1 1 434 0 875 194 43 56 chr3 208598834 208599066 -18925512 + MER61C-int LTR ERV1 226 454 -4763 2620 116 14 19 chr3 208599085 208599507 -18925071 + MER61C-int LTR ERV1 422 841 -4376 4436 124 10 3 chr3 208599507 208600184 -18924394 + MER61C-int LTR ERV1 959 1640 -3577 * 10125 109 22 14 chr3 208600163 208601751 -18922827 + MER61C-int LTR ERV1 1972 3572 -1645 * 10358 102 28 22 chr3 208601745 208601986 -18922592 + MER61C-int LTR ERV1 3446 3684 -1533 2071 105 17 17 chr3 208601986 208602281 -18922297 + AluSp SINE Alu 1 295 -18 10358 102 28 22 chr3 208602281 208603353 -18921225 + MER61C-int LTR ERV1 3684 4748 -469 2167 108 73 14 chr3 208603353 208603697 -18920881 - THE1B LTR MaLR 0 364 1 11492 92 13 7 chr3 208603697 208605266 -18919312 - THE1B-int LTR MaLR 0 1580 2 2119 101 81 35 chr3 208605269 208605615 -18918963 - THE1B LTR MaLR -2 362 1 10358 102 28 22 chr3 208605615 208606043 -18918535 + MER61C-int LTR ERV1 4749 5217 0 2541 158 12 9 chr3 208606043 208606473 -18918105 + MER61C LTR ERV1 1 431 -3 325 288 50 0 chr3 208606523 208606603 -18917975 + MER5A DNA MER1_type 18 101 -88 279 229 90 8 chr3 208606673 208606795 -18917783 - Charlie7 DNA MER1_type -1 2611 2480 2030 138 3 10 chr3 208606804 208607109 -18917469 + AluSx SINE Alu 1 303 -9 264 271 16 70 chr3 208607579 208607708 -18916870 + MIR3 SINE MIR 36 157 -51 5835 33 1 0 chr3 208607807 208608505 -18916073 + L1PA4 LINE L1 5454 6152 -3 243 211 77 90 chr3 208609304 208609450 -18915128 + MIR SINE MIR 40 179 -60 * 460 322 35 10 chr3 208609416 208609618 -18914960 - MIR SINE MIR 0 262 56 207 0 0 0 chr3 208610964 208610987 -18913591 + (TTA)n Simple_repeat Simple_repeat 2 24 0 783 302 62 62 chr3 208611427 208611844 -18912734 - MLT1J LTR MaLR -94 417 1 2015 156 8 11 chr3 208612002 208612373 -18912205 - L1PB1 LINE L1 0 6151 5782 455 66 7 66 chr3 208612389 208612526 -18912052 + (TA)n Simple_repeat Simple_repeat 2 130 0 4824 167 14 7 chr3 208612529 208614048 -18910530 - L1PB1 LINE L1 -361 5790 4265 4119 171 20 64 chr3 208614278 208615242 -18909336 - L1MB2 LINE L1 -3 6168 5250 2147 116 13 10 chr3 208615242 208615544 -18909034 - AluSp SINE Alu -4 309 7 4119 171 20 64 chr3 208615544 208615621 -18908957 - L1MB2 LINE L1 -921 5250 5171 1502 218 50 48 chr3 208616302 208616760 -18907818 - LTR40b LTR ERVL 0 462 4 896 202 5 32 chr3 208617576 208617764 -18906814 - MER3 DNA MER1_type 0 209 27 301 244 0 0 chr3 208617890 208617972 -18906606 + (TA)n Simple_repeat Simple_repeat 2 83 0 2319 109 0 0 chr3 208618621 208618933 -18905645 - AluSq SINE Alu -1 312 1 376 248 92 75 chr3 208619552 208619847 -18904731 - L1ME4a LINE L1 -89 6032 5733 279 348 86 45 chr3 208620803 208621024 -18903554 - L2 LINE L2 -76 3196 2967 261 204 0 0 chr3 208621203 208621252 -18903326 + MER5B DNA MER1_type 1 49 -129 264 49 0 0 chr3 208621275 208621316 -18903262 - L1MA3 LINE L1 0 6305 6265 332 289 41 33 chr3 208621332 208621453 -18903125 + MIR3 SINE MIR 45 166 -42 1504 239 20 6 chr3 208621796 208622144 -18902434 - MLT1A1 LTR MaLR 0 365 13 460 240 131 11 chr3 208622493 208622668 -18901910 + MER117 DNA MER1_type 1 196 -1 454 251 74 29 chr3 208622829 208623004 -18901574 + L1ME2 LINE L1 3974 4156 -1990 2112 232 102 63 chr3 208623020 208623888 -18900690 + L1ME2 LINE L1 5254 6155 -9 194 275 108 75 chr3 208623965 208624085 -18900493 + MIR3 SINE MIR 75 198 -10 316 309 146 22 chr3 208624590 208624768 -18899810 - MIR SINE MIR -3 259 60 205 291 35 47 chr3 208624785 208624924 -18899654 + MIR SINE MIR 11 144 -64 954 162 191 102 chr3 208626065 208626448 -18898130 - MSTC LTR MaLR -11 417 1 1759 198 34 78 chr3 208626575 208626985 -18897593 + L1MA1 LINE L1 503 894 -6671 * 14757 160 33 11 chr3 208626969 208628162 -18896416 + L1MA1 LINE L1 1733 2898 -4823 578 27 0 0 chr3 208628162 208628237 -18896341 + L1PA3 LINE L1 6081 6155 0 14757 160 33 11 chr3 208628237 208629534 -18895044 + L1MA1 LINE L1 2898 4165 -3556 1790 146 63 28 chr3 208629534 208629896 -18894682 - THE1C LTR MaLR 0 375 1 14757 160 33 11 chr3 208629896 208631158 -18893420 + L1MA1 LINE L1 4165 5398 -2323 351 0 0 0 chr3 208631158 208631197 -18893381 + (GAAAA)n Simple_repeat Simple_repeat 3 41 0 2080 145 0 0 chr3 208631205 208631509 -18893069 + AluSg SINE Alu 1 304 -6 14757 160 33 11 chr3 208631509 208633493 -18891085 + L1MA1 LINE L1 5404 7622 -99 2759 32 0 0 chr3 208633493 208633801 -18890777 - AluY SINE Alu -3 308 1 14757 160 33 11 chr3 208633801 208633897 -18890681 + L1MA1 LINE L1 7622 7714 -7 2145 156 17 0 chr3 208634234 208634594 -18889984 + MER47A DNA MER2_type 1 366 0 650 314 112 10 chr3 208636769 208637072 -18887506 - MLT1I LTR MaLR -8 401 68 913 196 105 13 chr3 208637170 208637399 -18887179 - L1MC3 LINE L1 -346 7439 7190 279 316 0 0 chr3 208637399 208637478 -18887100 - MLT1F1 LTR MaLR -442 125 47 272 330 100 10 chr3 208637486 208637586 -18886992 - MIR SINE MIR -61 147 39 216 326 101 0 chr3 208638697 208638786 -18885792 + L2 LINE L2 3169 3266 -6 347 308 21 14 chr3 208639215 208639358 -18885220 + L1ME LINE L1 5479 5622 -499 1544 234 85 59 chr3 208639480 208639569 -18885009 + MLT1F LTR MaLR 5 90 -415 2167 96 4 0 chr3 208639569 208639872 -18884706 - AluSx SINE Alu 0 304 1 1544 234 85 59 chr3 208639872 208640290 -18884288 + MLT1F LTR MaLR 90 502 -3 261 303 62 35 chr3 208640297 208640442 -18884136 - MIR SINE MIR -19 243 95 2193 78 7 7 chr3 208641269 208641576 -18883002 + AluY SINE Alu 1 307 -4 2677 32 3 0 chr3 208641870 208642178 -18882400 - AluY SINE Alu -2 309 1 404 270 111 32 chr3 208642597 208642786 -18881792 - MLT1J1 LTR MaLR 0 446 243 686 262 83 17 chr3 208643955 208644892 -18879686 - L1ME3A LINE L1 -9 6161 5103 225 318 47 53 chr3 208646715 208646885 -18877693 + L2 LINE L2 3143 3311 -2 40 21 0 0 chr3 208647241 208647288 -18877290 + AT_rich Low_complexity Low_complexity 1 47 0 272 293 67 0 chr3 208647466 208647541 -18877037 + MIR SINE MIR 64 143 -65 249 57 0 0 chr3 208647803 208647838 -18876740 + (TTA)n Simple_repeat Simple_repeat 2 36 0 329 299 86 70 chr3 208647915 208648216 -18876362 + MLT1K LTR MaLR 125 430 -158 294 292 91 25 chr3 208649511 208649702 -18874876 + MLT1L LTR MaLR 298 464 -47 211 170 0 38 chr3 208650311 208650364 -18874214 + T-rich Low_complexity Low_complexity 6 56 0 182 311 0 49 chr3 208651016 208651077 -18873501 - L2 LINE L2 -17 3296 3239 392 297 66 33 chr3 208652423 208652605 -18871973 - MLT1J2 LTR MaLR 0 450 263 235 293 61 24 chr3 208654634 208654798 -18869780 + Charlie8 DNA MER1_type 7 176 -2241 2266 97 3 16 chr3 208655912 208656220 -18868358 - AluSg SINE Alu -6 304 1 974 178 136 74 chr3 208656883 208657316 -18867262 + LTR37B LTR ERV1 1 460 -8 507 285 62 7 chr3 208657729 208657873 -18866705 - MIR SINE MIR -109 153 2 187 403 56 0 chr3 208658519 208658591 -18865987 - L2 LINE L2 -47 3225 3150 2179 142 0 0 chr3 208658672 208658975 -18865603 + AluSx SINE Alu 1 303 -9 25 0 0 0 chr3 208659096 208659121 -18865457 + AT_rich Low_complexity Low_complexity 1 25 0 964 258 78 18 chr3 208659543 208659877 -18864701 - MLT1K LTR MaLR -5 583 230 2257 99 3 0 chr3 208661129 208661422 -18863156 - AluSp SINE Alu -19 294 1 2418 72 10 0 chr3 208661655 208661960 -18862618 - AluY SINE Alu -3 308 1 313 284 64 0 chr3 208662092 208662201 -18862377 + MIR SINE MIR 47 162 -100 235 277 178 0 chr3 208662335 208662436 -18862142 + L2 LINE L2 3191 3309 -4 1633 216 61 11 chr3 208662472 208662916 -18861662 + MLT1C LTR MaLR 2 467 0 28 61 0 0 chr3 208664518 208664567 -18860011 + AT_rich Low_complexity Low_complexity 1 49 0 2199 90 0 37 chr3 208664647 208664947 -18859631 - AluY SINE Alu -22 289 1 664 82 0 10 chr3 208664947 208665044 -18859534 + L1MA2 LINE L1 6202 6297 -7 2127 156 17 0 chr3 208665381 208665741 -18858837 + MER47A DNA MER2_type 1 366 0 553 314 112 10 chr3 208667916 208668219 -18856359 - MLT1I LTR MaLR -8 401 68 1325 186 80 13 chr3 208668317 208668629 -18855949 - L1MC3 LINE L1 -346 7439 7107 208 290 104 13 chr3 208668629 208668725 -18855853 - MIR SINE MIR -58 150 47 211 326 101 0 chr3 208669845 208669934 -18854644 + L2 LINE L2 3169 3266 -6 450 301 43 46 chr3 208670363 208670708 -18853870 + L1ME LINE L1 5479 5822 -299 4260 196 63 6 chr3 208670727 208671877 -18852701 - L1P4 LINE L1 -394 5772 4689 215 91 0 23 chr3 208671877 208671921 -18852657 + (TTTTA)n Simple_repeat Simple_repeat 4 46 0 8379 31 3 4 chr3 208671923 208673691 -18850887 - L1PA3 LINE L1 -15 6140 4366 4260 196 63 6 chr3 208673691 208673823 -18850755 - L1P4 LINE L1 -1477 4689 4566 342 0 0 0 chr3 208673823 208673861 -18850717 + (TG)n Simple_repeat Simple_repeat 2 39 0 4260 196 63 6 chr3 208673861 208674136 -18850442 - L1P4 LINE L1 -1600 4566 4125 22 35 0 0 chr3 208674136 208674165 -18850413 + AT_rich Low_complexity Low_complexity 1 29 0 1855 264 65 49 chr3 208674175 208675166 -18849412 - HAL1 LINE L1 -3 2504 1499 872 259 57 12 chr3 208675169 208675416 -18849162 - MIR SINE MIR -1 261 4 711 277 77 22 chr3 208675416 208675817 -18848761 - HAL1 LINE L1 -1009 1498 1076 1513 73 17 17 chr3 208675858 208676091 -18848487 + MER61-int LTR ERV1 3453 3685 -1532 2090 105 17 17 chr3 208676092 208676387 -18848191 + AluSp SINE Alu 1 295 -18 2138 129 0 0 chr3 208676808 208677102 -18847476 - AluSq SINE Alu -19 294 1 680 285 90 25 chr3 208677166 208677566 -18847012 - HAL1 LINE L1 -1691 816 391 183 310 0 35 chr3 208677751 208677838 -18846740 - MIR3 SINE MIR -15 193 110 417 39 0 0 chr3 208678883 208678934 -18845644 + (CA)n Simple_repeat Simple_repeat 2 52 0 352 248 43 75 chr3 208679362 208679523 -18845055 - L2 LINE L2 -8 3305 3150 692 318 164 20 chr3 208679547 208680008 -18844570 - L2 LINE L2 -312 3001 2454 226 274 137 0 chr3 208680061 208680134 -18844444 - L2 LINE L2 0 3272 3190 215 333 117 39 chr3 208680146 208680377 -18844201 - L2 LINE L2 -700 2614 2366 445 302 28 66 chr3 208680403 208680558 -18844020 - MIR SINE MIR -10 252 106 1081 37 0 0 chr3 208680558 208680692 -18843886 + L1PA5 LINE L1 6021 6154 0 445 302 28 66 chr3 208680692 208680748 -18843830 - MIR SINE MIR -156 106 49 198 328 102 8 chr3 208680759 208680887 -18843691 - L2 LINE L2 -963 2351 2212 520 235 59 0 chr3 208680897 208681033 -18843545 + LTR16C LTR ERVL 348 491 0 231 298 36 24 chr3 208681756 208681840 -18842738 - MIR SINE MIR -67 141 57 32 0 0 0 chr3 208681847 208681879 -18842699 + AT_rich Low_complexity Low_complexity 1 32 0 306 176 44 0 chr3 208681884 208681952 -18842626 - L1PB4 LINE L1 -12 6144 6074 34 55 0 0 chr3 208682685 208682740 -18841838 + AT_rich Low_complexity Low_complexity 1 55 0 717 153 0 0 chr3 208682742 208682853 -18841725 + FLAM_C SINE Alu 1 111 -32 284 317 77 0 chr3 208682924 208683028 -18841550 - MIR3 SINE MIR -16 192 81 360 278 0 70 chr3 208683551 208683666 -18840912 - MIR SINE MIR -85 123 17 286 247 12 12 chr3 208684587 208684672 -18839906 - MER94 DNA DNA -49 85 1 217 387 66 28 chr3 208684757 208684863 -18839715 - L2 LINE L2 -11 3261 3152 22 0 0 0 chr3 208685652 208685674 -18838904 + AT_rich Low_complexity Low_complexity 1 22 0 27 0 0 0 chr3 208685740 208685767 -18838811 + AT_rich Low_complexity Low_complexity 1 27 0 23 0 0 0 chr3 208686779 208686802 -18837776 + AT_rich Low_complexity Low_complexity 1 23 0 317 309 138 0 chr3 208686817 208686940 -18837638 - MIR SINE MIR -89 173 34 1979 151 71 13 chr3 208687956 208688348 -18836230 - MSTB LTR MaLR 0 426 12 180 0 0 0 chr3 208688426 208688446 -18836132 + (T)n Simple_repeat Simple_repeat 1 20 0 714 144 8 2 chr3 208688464 208688708 -18835870 + AluSx SINE Alu 2 296 -14 381 274 46 57 chr3 208688999 208689174 -18835404 - MIR SINE MIR -77 185 13 711 295 178 42 chr3 208689690 208690527 -18834051 + L2 LINE L2 2312 3270 -43 500 325 36 6 chr3 208691439 208691605 -18832973 + MIR3 SINE MIR 30 200 -8 1869 164 3 13 chr3 208691682 208691994 -18832584 + AluJb SINE Alu 1 309 -3 298 301 117 0 chr3 208692036 208692139 -18832439 - L2 LINE L2 0 3313 3199 1144 219 4 21 chr3 208692157 208692394 -18832184 + AluJb SINE Alu 76 308 -4 2091 107 3 30 chr3 208693162 208693460 -18831118 - AluSx SINE Alu -8 304 15 23 0 0 0 chr3 208693603 208693626 -18830952 + AT_rich Low_complexity Low_complexity 1 23 0 549 325 74 0 chr3 208693737 208693968 -18830610 + LTR16A LTR ERVL 3 250 -200 488 309 165 18 chr3 208694245 208694627 -18829951 + LTR16A LTR ERVL 13 450 0 25 31 0 0 chr3 208695019 208695051 -18829527 + AT_rich Low_complexity Low_complexity 1 32 0 290 272 62 0 chr3 208696040 208696121 -18828457 - MIR SINE MIR -17 245 160 1803 234 148 12 chr3 208696171 208696671 -18827907 + MER69 DNA AcHobo 1 568 -1958 1375 211 55 47 chr3 208696657 208697144 -18827434 + MER69 DNA AcHobo 2000 2490 -36 * 252 194 48 65 chr3 208697153 208697215 -18827363 - MIR SINE MIR -179 83 23 227 354 130 14 chr3 208697508 208697723 -18826855 + L2 LINE L2 590 829 -2485 448 257 75 28 chr3 208698818 208699032 -18825546 + Charlie8 DNA MER1_type 53 276 -2141 292 250 36 36 chr3 208699076 208699160 -18825418 - MIR3 SINE MIR -51 157 74 256 299 6 6 chr3 208699748 208699915 -18824663 + CT-rich Low_complexity Low_complexity 5 171 0 492 297 98 19 chr3 208700202 208700468 -18824110 + LTR16C LTR ERVL 192 478 -13 627 305 0 24 chr3 208700685 208700898 -18823680 - MIR SINE MIR -48 214 7 353 301 128 23 chr3 208700896 208701115 -18823463 + MIR SINE MIR 7 248 -14 * 205 83 28 28 chr3 208701911 208701947 -18822631 + MIR SINE MIR 117 152 -110 352 94 0 0 chr3 208702567 208702620 -18821958 + L1MC3 LINE L1 7678 7730 -55 1980 129 0 3 chr3 208902989 208903276 -18621302 - AluSx SINE Alu -26 286 1 201 358 37 0 chr3 208903415 208903496 -18621082 + L2 LINE L2 3139 3222 -50 238 340 81 60 chr3 208903512 208903764 -18620814 + L2 LINE L2 2196 2458 -856 2172 102 0 7 chr3 208903764 208904059 -18620519 + AluSg SINE Alu 1 293 -17 238 340 81 60 chr3 208904059 208904138 -18620440 + L2 LINE L2 2458 2534 -780 322 247 25 12 chr3 208904656 208904737 -18619841 + L2 LINE L2 3003 3084 -188 1349 197 73 98 chr3 208905185 208905663 -18618915 + L1ME2 LINE L1 5699 6164 0 192 216 0 39 chr3 208905663 208905714 -18618864 - L2 LINE L2 -984 2330 2282 2043 133 0 0 chr3 208905769 208906070 -18618508 - AluSq SINE Alu -12 301 1 229 200 0 0 chr3 208906166 208906211 -18618367 - MARNA DNA Mariner -59 527 483 252 241 179 27 chr3 208906251 208906363 -18618215 - MARNA DNA Mariner -104 482 354 331 307 33 47 chr3 208906812 208906962 -18617616 - MARNA DNA Mariner -221 365 218 1947 86 0 128 chr3 208906993 208907330 -18617248 + AluSx SINE Alu 2 295 -7 12978 109 33 77 chr3 208907734 208908180 -18616398 + Tigger1 DNA MER2_type 24 488 -1930 1867 107 4 0 chr3 208908180 208908443 -18616135 - AluSx SINE Alu -15 297 34 12978 109 33 77 chr3 208908443 208908559 -18616019 + Tigger1 DNA MER2_type 488 608 -1810 1683 197 0 0 chr3 208908559 208908853 -18615725 + AluJo SINE Alu 2 295 -17 12978 109 33 77 chr3 208908853 208908901 -18615677 + Tigger1 DNA MER2_type 608 657 -1761 2131 118 0 0 chr3 208908901 208909207 -18615371 + AluSx SINE Alu 1 306 -6 12978 109 33 77 chr3 208909207 208909805 -18614773 + Tigger1 DNA MER2_type 657 1280 -1138 1941 141 0 3 chr3 208909805 208910111 -18614467 - AluSx SINE Alu -3 309 5 12978 109 33 77 chr3 208910111 208910698 -18613880 + Tigger1 DNA MER2_type 1280 1699 -719 2133 114 0 7 chr3 208910698 208910996 -18613582 + AluSq SINE Alu 1 296 -17 12978 109 33 77 chr3 208910996 208911524 -18613054 + Tigger1 DNA MER2_type 1699 2249 -169 2044 108 35 0 chr3 208911573 208911859 -18612719 - AluSx SINE Alu -16 296 1 239 182 45 0 chr3 208911890 208911934 -18612644 - MLT1H LTR MaLR -188 367 322 715 260 59 14 chr3 208911977 208912196 -18612382 - MLT1H LTR MaLR -269 280 52 727 279 29 0 chr3 208912251 208912423 -18612155 + MER5B DNA MER1_type 1 177 -1 283 250 232 45 chr3 208912441 208912553 -18612025 - MER5A DNA MER1_type -11 178 46 548 183 191 8 chr3 208912597 208912723 -18611855 + MER58C DNA MER1_type 67 215 0 1057 269 29 42 chr3 208913013 208913392 -18611186 + MLT1K LTR MaLR 179 552 -36 1739 113 0 65 chr3 208913513 208913804 -18610774 - AluSx SINE Alu -40 272 1 2178 109 0 0 chr3 208914168 208914470 -18610108 - AluSq SINE Alu -11 302 1 1531 169 7 16 chr3 208914571 208914878 -18609700 - AluJo SINE Alu -2 310 7 2241 93 0 0 chr3 208914890 208915190 -18609388 - AluSq SINE Alu -13 300 1 859 181 29 23 chr3 208915368 208915539 -18609039 + AluJo SINE Alu 127 298 -14 1910 142 7 10 chr3 208915689 208915998 -18608580 + AluSx SINE Alu 1 308 -4 456 128 39 0 chr3 208916583 208916661 -18607917 + AluJ/FLAM SINE Alu 5 85 -227 225 300 0 0 chr3 208917368 208917428 -18607150 + GA-rich Low_complexity Low_complexity 2 61 0 206 329 27 0 chr3 208918655 208918728 -18605850 - L2 LINE L2 -18 3295 3221 2084 113 3 10 chr3 208918729 208919030 -18605548 + AluSq SINE Alu 1 299 -14 865 87 0 0 chr3 208919040 208919155 -18605423 + AluSq/x SINE Alu 1 115 -197 2018 112 7 23 chr3 208920075 208920380 -18604198 + AluSx SINE Alu 1 300 -12 1474 91 0 36 chr3 208921225 208921444 -18603134 - AluSg/x SINE Alu -15 295 85 3417 167 64 3 chr3 208921463 208922120 -18602458 - L1MB3 LINE L1 -4 6179 5483 2244 110 0 0 chr3 208922121 208922430 -18602148 - AluSc SINE Alu 0 309 1 1111 66 0 0 chr3 208922430 208922566 -18602012 - AluSq/x SINE Alu -176 136 1 670 293 0 0 chr3 208922567 208922714 -18601864 + LTR33 LTR ERVL 71 217 -304 203 216 91 34 chr3 208922811 208922899 -18601679 - L2 LINE L2 -2887 427 335 253 297 0 0 chr3 208922966 208923030 -18601548 - MIR SINE MIR -13 249 186 2087 114 7 3 chr3 208923035 208923342 -18601236 - AluSx SINE Alu -4 308 1 343 221 0 58 chr3 208923343 208923429 -18601149 - L1MCa LINE L1 -4340 2086 2006 394 184 0 92 chr3 208923435 208923533 -18601045 - L1MC4 LINE L1 -1340 6702 6614 2259 96 0 0 chr3 208923562 208923855 -18600723 - AluSx SINE Alu -18 294 2 2030 115 3 3 chr3 208923920 208924216 -18600362 - AluSg SINE Alu -14 296 1 22 0 0 0 chr3 208924678 208924700 -18599878 + AT_rich Low_complexity Low_complexity 1 22 0 291 198 135 27 chr3 208924741 208924852 -18599726 + AluSp/q SINE Alu 176 298 -5 1219 198 20 58 chr3 208925331 208925606 -18598972 - LTR40b LTR ERVL -5 457 192 1923 119 45 0 chr3 208925606 208925892 -18598686 - AluSx SINE Alu -13 299 1 1219 198 20 58 chr3 208925892 208925909 -18598669 - LTR40b LTR ERVL -270 192 176 1881 147 0 0 chr3 208925926 208926212 -18598366 - AluSx SINE Alu -22 290 5 581 183 95 0 chr3 208926226 208926352 -18598226 - LTR40a LTR ERVL -277 242 105 * 606 217 258 45 chr3 208926349 208926593 -18597985 + LTR40c LTR ERVL 170 465 0 253 35 0 0 chr3 208927550 208927579 -18596999 + LTR6A LTR ERV1 73 101 -463 7856 56 40 2 chr3 208927619 208928589 -18595989 - LTR13 LTR ERVK 0 1007 1 447 319 157 14 chr3 208928742 208928958 -18595620 + L2 LINE L2 3025 3271 -1 416 274 135 42 chr3 208928992 208929251 -18595327 - L2 LINE L2 -183 3089 2807 946 143 91 0 chr3 208929287 208929462 -18595116 - AluSg/x SINE Alu -2 310 120 2144 74 3 0 chr3 208929469 208929754 -18594824 - AluSx SINE Alu -23 289 4 233 310 147 0 chr3 208929861 208929990 -18594588 + MIR SINE MIR 76 223 -39 210 64 21 43 chr3 208930858 208930905 -18593673 + (TA)n Simple_repeat Simple_repeat 1 46 0 815 150 0 8 chr3 208930905 208931025 -18593553 - FLAM_C SINE Alu -23 120 2 1975 141 7 3 chr3 208931687 208931993 -18592585 + AluSx SINE Alu 2 308 -4 192 77 0 0 chr3 208931995 208932021 -18592557 + (GGGA)n Simple_repeat Simple_repeat 3 28 0 260 309 52 29 chr3 208932452 208932588 -18591990 - L2 LINE L2 -410 2904 2766 1984 102 46 0 chr3 208932927 208933211 -18591367 + AluSx SINE Alu 1 297 -15 2144 94 0 3 chr3 208933565 208933883 -18590695 + AluSq SINE Alu 1 317 0 442 362 47 7 chr3 208934105 208934381 -18590197 + L2 LINE L2 2407 2693 -621 2157 112 0 3 chr3 208934399 208934712 -18589866 - AluSx SINE Alu 0 312 1 230 276 167 45 chr3 208934950 208935106 -18589472 + L2 LINE L2 3123 3297 -16 1679 99 0 25 chr3 208935128 208935371 -18589207 + AluSx SINE Alu 1 237 -75 686 273 107 35 chr3 208935745 208935786 -18588792 - L1P5 LINE L1 -700 5454 5417 2008 134 0 0 chr3 208935786 208936085 -18588493 + AluSg SINE Alu 1 299 -11 686 273 107 35 chr3 208936085 208936648 -18587930 - L1P5 LINE L1 -737 5417 4795 218 217 6 181 chr3 208936705 208936807 -18587771 + MIR SINE MIR 72 136 -126 2152 74 10 10 chr3 208936807 208937104 -18587474 + AluSx SINE Alu 1 297 -15 218 217 6 181 chr3 208937104 208937167 -18587411 + MIR SINE MIR 136 208 -54 272 266 53 53 chr3 208937254 208937348 -18587230 + MIR3 SINE MIR 108 201 -7 23 54 0 0 chr3 208938249 208938286 -18586292 + GC_rich Low_complexity Low_complexity 1 37 0 187 350 125 12 chr3 208938435 208938595 -18585983 - MIR3 SINE MIR -22 186 9 668 158 20 34 chr3 208940633 208940779 -18583799 - L1MB7 LINE L1 0 6184 6041 2228 82 0 0 chr3 208941636 208941927 -18582651 + AluSx SINE Alu 1 291 -21 206 182 0 0 chr3 208941981 208942014 -18582564 + MIR SINE MIR 218 250 -12 2092 118 10 0 chr3 208942255 208942559 -18582019 + AluSx SINE Alu 1 307 -5 2051 123 3 3 chr3 208943236 208943545 -18581033 + AluSx SINE Alu 1 309 -3 659 206 23 0 chr3 208944170 208944345 -18580233 + CT-rich Low_complexity Low_complexity 2 180 0 2063 99 7 3 chr3 208944348 208944641 -18579937 - AluSx SINE Alu -18 294 1 1916 85 0 107 chr3 208944949 208945112 -18579466 - AluSp SINE Alu -20 293 181 4369 44 4 4 chr3 208945112 208945640 -18578938 - L1PA5 LINE L1 0 6154 5627 1916 85 0 107 chr3 208945640 208945804 -18578774 - AluSp SINE Alu -132 181 1 829 235 30 83 chr3 208945854 208946156 -18578422 + MER102a DNA MER1_type 36 321 -9 2396 65 0 10 chr3 208946185 208946493 -18578085 - AluY SINE Alu -6 305 1 1684 42 28 5 chr3 208946493 208946708 -18577870 - L1PA13 LINE L1 -2 6161 5942 3864 57 10 2 chr3 208947070 208947559 -18577019 - L1HS LINE L1 0 6155 5663 313 229 118 16 chr3 208947863 208947992 -18576586 + MIR SINE MIR 99 246 -16 1976 88 34 17 chr3 208950052 208950346 -18574232 - AluSq SINE Alu -14 299 1 2729 89 8 6 chr3 208950453 208950814 -18573764 + THE1B LTR MaLR 1 362 -2 412 225 0 0 chr3 208950816 208950896 -18573682 + MER103 DNA DNA 7 86 -80 21 0 0 0 chr3 208950898 208950919 -18573659 + AT_rich Low_complexity Low_complexity 1 21 0 390 91 91 0 chr3 208950920 208951085 -18573493 + (TA)n Simple_repeat Simple_repeat 1 180 0 557 241 23 30 chr3 208951582 208951715 -18572863 + MIR SINE MIR 129 260 -2 4624 163 75 7 chr3 208951844 208952040 -18572538 - L1MD2 LINE L1 -12 6347 6166 302 0 26 0 chr3 208952040 208952078 -18572500 + (TG)n Simple_repeat Simple_repeat 2 40 0 4624 163 75 7 chr3 208952078 208952771 -18571807 - L1MD2 LINE L1 -193 6166 5397 1200 139 227 8 chr3 208953046 208953297 -18571281 + AluYa8 SINE Alu 1 306 -4 1527 129 152 4 chr3 208953800 208954063 -18570515 - AluSx SINE Alu 0 302 1 21 0 0 0 chr3 208954069 208954090 -18570488 + AT_rich Low_complexity Low_complexity 1 21 0 644 199 15 0 chr3 208954090 208954221 -18570357 - FLAM_C SINE Alu 0 133 1 1717 141 3 35 chr3 208954933 208955245 -18569333 + AluJb SINE Alu 11 312 0 210 287 148 10 chr3 208956036 208956137 -18568441 - L2 LINE L2 -219 3053 2939 2148 111 3 3 chr3 208956234 208956541 -18568037 - AluSx SINE Alu -3 309 3 2324 79 7 0 chr3 208956767 208957070 -18567508 + AluY SINE Alu 1 305 -6 286 279 67 0 chr3 208957398 208957502 -18567076 - L1ME4a LINE L1 -12 6109 5999 1276 32 0 13 chr3 208958291 208958447 -18566131 - L1PA5 LINE L1 0 6154 6001 2105 107 17 3 chr3 208959559 208959858 -18564720 - AluSx SINE Alu -9 303 1 649 278 17 11 chr3 208959945 208960121 -18564457 + MER5B DNA MER1_type 1 177 -1 2152 113 0 3 chr3 208961660 208961970 -18562608 - AluSx SINE Alu -2 310 2 990 158 153 5 chr3 208962398 208962588 -18561990 - MER20 DNA MER1_type -1 218 1 1331 117 66 93 chr3 208962590 208962816 -18561762 + MER33 DNA MER1_type 1 217 -2368 1513 199 0 0 chr3 208962816 208963107 -18561471 - AluJo SINE Alu -12 300 10 1331 117 66 93 chr3 208963107 208963213 -18561365 + MER33 DNA MER1_type 217 324 0 416 138 125 0 chr3 208963556 208963636 -18560942 + L2 LINE L2 3224 3313 0 1434 147 64 4 chr3 208963720 208964010 -18560568 - AluJb SINE Alu 0 306 1 1451 172 11 8 chr3 208964322 208964589 -18559989 - AluJb SINE Alu -44 268 1 2196 116 0 0 chr3 208964969 208965279 -18559299 - AluSx SINE Alu -2 310 1 207 211 18 0 chr3 208965357 208965414 -18559164 + T-rich Low_complexity Low_complexity 3 60 0 845 161 58 7 chr3 208965474 208965629 -18558949 + MIR SINE MIR 99 261 -1 1697 164 3 22 chr3 208965998 208966310 -18558268 + AluJo SINE Alu 1 306 -6 211 244 103 64 chr3 208966440 208966518 -18558060 - L2 LINE L2 -33 3239 3159 354 256 108 8 chr3 208966675 208966804 -18557774 - MIR SINE MIR -4 258 117 26 0 0 0 chr3 208966957 208966983 -18557595 + AT_rich Low_complexity Low_complexity 1 26 0 227 284 30 15 chr3 208967780 208967847 -18556731 + L2 LINE L2 3246 3313 0 2343 79 0 0 chr3 208967979 208968283 -18556295 + AluY SINE Alu 1 304 -7 2883 201 35 32 chr3 208968312 208968962 -18555616 + L1MC/D LINE L1 4654 5301 -988 1707 123 47 7 chr3 208968962 208969239 -18555339 + AluJb SINE Alu 23 310 -2 2883 201 35 32 chr3 208969239 208969411 -18555167 + L1MC/D LINE L1 5301 5485 -804 2124 88 0 20 chr3 208969411 208969708 -18554870 + AluSg SINE Alu 1 291 -19 2883 201 35 32 chr3 208969708 208969771 -18554807 + L1MC/D LINE L1 5485 5546 -743 3687 157 33 60 chr3 208969771 208969891 -18554687 + Cheshire DNA MER1_type 1628 1750 -670 1509 121 39 0 chr3 208969891 208970123 -18554455 + AluSx SINE Alu 62 302 -10 3687 157 33 60 chr3 208970123 208970249 -18554329 + Cheshire DNA MER1_type 1750 1878 -542 586 141 50 16 chr3 208970249 208970370 -18554208 + L1MB4 LINE L1 6055 6179 -1 3687 157 33 60 chr3 208970370 208970580 -18553998 + Cheshire DNA MER1_type 1878 2092 -328 1967 134 3 0 chr3 208970580 208970878 -18553700 - AluSx SINE Alu -9 303 5 3687 157 33 60 chr3 208970878 208971233 -18553345 + Cheshire DNA MER1_type 2092 2419 -1 316 290 56 12 chr3 208971233 208971265 -18553313 - L1M4 LINE L1 -3082 3064 3035 2207 74 0 14 chr3 208971265 208971562 -18553016 - AluY SINE Alu 0 311 19 316 290 56 12 chr3 208971562 208971691 -18552887 - L1M4 LINE L1 -3111 3035 2896 802 169 0 0 chr3 208971708 208971832 -18552746 - FRAM SINE Alu -30 146 23 636 253 50 0 chr3 208971850 208972048 -18552530 - L1M4 LINE L1 -3232 2914 2707 1591 157 45 17 chr3 208972737 208973061 -18551517 - AluJo SINE Alu 0 332 1 997 141 12 99 chr3 208973649 208973679 -18550899 + L1MC2 LINE L1 6104 6135 -209 2022 110 7 3 chr3 208973679 208973978 -18550600 + AluSc SINE Alu 1 300 -9 2283 83 0 10 chr3 208973981 208974282 -18550296 + AluSg SINE Alu 1 298 -12 997 141 12 99 chr3 208974282 208974489 -18550089 + L1MC2 LINE L1 6137 6324 -20 2179 60 40 23 chr3 208974901 208975200 -18549378 - AluSc SINE Alu -5 304 1 22 35 0 0 chr3 208977538 208977567 -18547011 + AT_rich Low_complexity Low_complexity 1 29 0 222 386 0 0 chr3 208983178 208983266 -18541312 - L3 LINE CR1 -1041 536 449 230 191 0 0 chr3 208983340 208983382 -18541196 + MIR SINE MIR 32 73 -135 * 332 283 234 49 chr3 208983377 208983634 -18540944 + L3 LINE CR1 686 894 -683 2045 118 7 3 chr3 208983634 208983938 -18540640 + AluSx SINE Alu 1 305 -7 332 283 234 49 chr3 208983938 208984069 -18540509 + L3 LINE CR1 894 1146 -431 250 323 194 0 chr3 208984073 208984228 -18540350 + L3 LINE CR1 1392 1576 -1 2007 122 3 3 chr3 208984474 208984768 -18539810 + AluSx SINE Alu 2 295 -17 1601 169 21 0 chr3 208984773 208985057 -18539521 + AluJb SINE Alu 1 290 -22 1887 150 0 7 chr3 208985287 208985587 -18538991 - AluSx SINE Alu -14 298 1 848 132 0 0 chr3 208986195 208986331 -18538247 + AluSg/x SINE Alu 175 310 0 2435 68 0 0 chr3 208986595 208986890 -18537688 + AluSx SINE Alu 1 295 -17 1748 144 4 4 chr3 208988093 208988370 -18536208 + AluJo SINE Alu 1 277 -35 244 194 56 0 chr3 208988423 208988495 -18536083 + GA-rich Low_complexity Low_complexity 2 77 0 2136 105 0 3 chr3 208989005 208989299 -18535279 + AluSx SINE Alu 1 293 -19 406 68 17 212 chr3 208989972 208990039 -18534539 + MER53 DNA DNA 95 131 -58 1999 114 3 7 chr3 208990039 208990336 -18534242 + AluSx SINE Alu 1 296 -16 406 68 17 212 chr3 208990336 208990386 -18534192 + MER53 DNA DNA 131 189 0 32 26 0 0 chr3 208991199 208991238 -18533340 + AT_rich Low_complexity Low_complexity 1 39 0 2225 72 7 3 chr3 208991305 208991598 -18532980 + AluY SINE Alu 11 304 -7 2121 106 0 3 chr3 208991702 208991995 -18532583 + AluSx SINE Alu 1 292 -20 1042 258 160 37 chr3 208993706 208993911 -18530667 - L2 LINE L2 0 3313 3135 1756 135 27 27 chr3 208993911 208994208 -18530370 + AluSx SINE Alu 1 297 -15 1042 258 160 37 chr3 208994208 208994711 -18529867 - L2 LINE L2 -178 3135 2547 2221 99 3 0 chr3 208994935 208995237 -18529341 - AluSx SINE Alu -9 303 1 245 318 176 17 chr3 208995294 208995470 -18529108 - L3 LINE CR1 -156 1421 1218 190 244 0 0 chr3 208995733 208995774 -18528804 - L2 LINE L2 -96 3176 3136 * 359 266 50 86 chr3 208995757 208995896 -18528682 - MIR SINE MIR -72 136 3 1752 124 72 0 chr3 208996238 208996523 -18528055 + AluSx SINE Alu 1 304 0 220 259 7 104 chr3 208997890 208998025 -18526553 + MER5A DNA MER1_type 68 189 0 995 193 10 31 chr3 209000045 209000237 -18524341 + MER5A DNA MER1_type 2 189 0 263 247 59 123 chr3 209000261 209000431 -18524147 - L2 LINE L2 0 3313 3155 299 275 104 58 chr3 209000616 209000856 -18523722 - L2 LINE L2 -474 2840 2590 2020 114 34 0 chr3 209001826 209002123 -18522455 + AluSq SINE Alu 1 307 -6 251 88 0 0 chr3 209002242 209002276 -18522302 - MER20 DNA MER1_type -91 128 95 1473 100 306 7 chr3 209002276 209002557 -18522021 + MER47A DNA MER2_type 2 366 0 432 182 0 81 chr3 209002561 209002597 -18521981 - MER20 DNA MER1_type -128 91 54 1790 117 113 8 chr3 209002597 209002862 -18521716 + AluSx SINE Alu 1 293 -19 432 182 0 81 chr3 209002862 209002924 -18521654 - MER20 DNA MER1_type -165 54 1 1921 167 0 10 chr3 209003560 209003871 -18520707 + AluSx SINE Alu 1 308 -4 235 317 54 119 chr3 209003928 209004408 -18520170 - L2 LINE L2 -20 3252 2804 21 0 0 0 chr3 209004791 209004812 -18519766 + AT_rich Low_complexity Low_complexity 1 21 0 279 0 0 0 chr3 209005565 209005596 -18518982 + (TG)n Simple_repeat Simple_repeat 2 32 0 289 167 4 14 chr3 209005748 209006003 -18518575 + AluJo SINE Alu 1 302 0 466 137 0 0 chr3 209006345 209006418 -18518160 + L1PA16 LINE L1 6038 6110 -56 371 103 0 0 chr3 209009018 209009076 -18515502 + L1PA16 LINE L1 6107 6164 -2 4280 147 72 36 chr3 209009108 209009949 -18514629 + MER4D LTR ERV1 1 872 0 2499 65 0 3 chr3 209010202 209010494 -18514084 + AluSx SINE Alu 1 291 -21 252 335 68 107 chr3 209010787 209011244 -18513334 + L2 LINE L2 2834 3272 0 1672 167 51 48 chr3 209011809 209012181 -18512397 - THE1C LTR MaLR 0 375 3 2171 139 0 0 chr3 209012204 209012506 -18512072 + AluSx SINE Alu 1 302 -10 655 364 37 4 chr3 209013579 209013821 -18510757 - MIR SINE MIR -8 254 5 357 238 143 54 chr3 209014124 209014271 -18510307 + L1ME4a LINE L1 5945 6104 -17 735 171 8 0 chr3 209015108 209015231 -18509347 + FLAM_A SINE Alu 1 124 -9 780 179 70 30 chr3 209015410 209015611 -18508967 + L1MC4a LINE L1 5711 5919 -1889 2203 118 3 7 chr3 209015647 209015951 -18508627 + AluSq SINE Alu 1 303 -10 247 239 150 42 chr3 209016161 209016421 -18508157 + L1ME4a LINE L1 5815 6102 -19 868 239 39 30 chr3 209017808 209018139 -18506439 + L1MC5 LINE L1 7603 7936 -25 331 356 41 0 chr3 209019128 209019274 -18505304 - MER5B DNA MER1_type 0 178 27 187 326 72 43 chr3 209019152 209019290 -18505288 + MER5A DNA MER1_type 36 177 -12 * 1915 134 147 24 chr3 209019427 209019808 -18504770 - MSTA LTR MaLR 0 428 1 892 74 88 14 chr3 209019808 209019956 -18504622 + MER30 DNA MER1_type 2 160 -70 2261 95 3 0 chr3 209020337 209020654 -18503924 - AluSq SINE Alu 0 318 1 256 267 120 0 chr3 209022273 209022365 -18502213 + MIR SINE MIR 25 125 -83 235 173 77 19 chr3 209022382 209022434 -18502144 - L2 LINE L2 0 3313 3259 408 232 98 9 chr3 209022509 209022621 -18501957 + MIR SINE MIR 47 168 -94 2199 100 7 7 chr3 209022625 209022916 -18501662 - AluSx SINE Alu -21 291 1 2120 133 0 7 chr3 209023567 209023861 -18500717 + AluJb SINE Alu 1 292 -20 321 264 127 25 chr3 209023970 209024055 -18500523 - L1ME4a LINE L1 -178 5943 5868 982 168 67 11 chr3 209024055 209024234 -18500344 - MER5A DNA MER1_type 0 189 1 321 264 127 25 chr3 209024234 209024249 -18500329 - L1ME4a LINE L1 -253 5868 5856 2088 112 9 46 chr3 209024249 209024572 -18500006 - AluSx SINE Alu 0 312 2 321 264 127 25 chr3 209024572 209024667 -18499911 - L1ME4a LINE L1 -265 5856 5727 27 0 0 0 chr3 209025162 209025189 -18499389 + AT_rich Low_complexity Low_complexity 1 27 0 2287 95 10 3 chr3 209025195 209025490 -18499088 - AluSx SINE Alu -15 297 1 1258 133 4 104 chr3 209025494 209025735 -18498843 - AluJb SINE Alu -17 295 79 1674 209 52 81 chr3 209025941 209026368 -18498210 - MLT1F1 LTR MaLR 0 567 129 2172 112 3 7 chr3 209026368 209026663 -18497915 - AluSx SINE Alu -18 294 1 1674 209 52 81 chr3 209026663 209026690 -18497888 - MLT1F1 LTR MaLR -438 129 103 1795 172 0 21 chr3 209026690 209027003 -18497575 - AluJb SINE Alu 0 307 1 1674 209 52 81 chr3 209027003 209027061 -18497517 - MLT1F1 LTR MaLR -464 103 67 8661 68 3 3 chr3 209027107 209028178 -18496400 - MER11C LTR ERVK 0 1071 1 1475 122 67 75 chr3 209028348 209028602 -18495976 - AluSg SINE Alu -58 252 1 424 308 39 33 chr3 209028662 209028844 -18495734 - MIR SINE MIR -79 183 1 1981 124 76 0 chr3 209029957 209030247 -18494331 - AluSx SINE Alu 0 312 1 21 0 0 0 chr3 209030318 209030339 -18494239 + AT_rich Low_complexity Low_complexity 1 21 0 183 215 0 0 chr3 209030676 209030741 -18493837 + (TTAGGG)n Simple_repeat Simple_repeat 5 69 0 192 40 0 0 chr3 209032111 209032136 -18492442 + (A)n Simple_repeat Simple_repeat 1 25 0 2251 107 7 0 chr3 209032385 209032714 -18491864 + AluSq SINE Alu 1 313 0 582 167 0 0 chr3 209032727 209032817 -18491761 + AluSg/x SINE Alu 203 292 -17 1244 195 22 0 chr3 209032825 209033092 -18491486 + L1ME1 LINE L1 5406 5678 -488 1255 192 23 27 chr3 209033105 209033365 -18491213 + L1ME1 LINE L1 5903 6161 -5 2091 131 7 7 chr3 209033392 209033690 -18490888 + AluSx SINE Alu 1 298 -14 2088 136 3 13 chr3 209033825 209034134 -18490444 + AluSx SINE Alu 1 306 -6 196 275 88 12 chr3 209034489 209034569 -18490009 + L2 LINE L2 2971 3056 -216 191 281 366 0 chr3 209034577 209034730 -18489848 + MIR SINE MIR 46 254 -8 253 361 46 0 chr3 209034866 209034974 -18489604 - MIR SINE MIR -1 261 149 885 114 53 0 chr3 209034991 209035123 -18489455 - AluSg/x SINE Alu -25 287 149 1882 162 10 10 chr3 209035451 209035760 -18488818 - AluJb SINE Alu -3 309 1 568 253 89 7 chr3 209036336 209036482 -18488096 - MIR3 SINE MIR -10 198 41 264 259 37 0 chr3 209037397 209037478 -18487100 - L1ME4a LINE L1 -87 6034 5951 2230 98 20 0 chr3 209037541 209037836 -18486742 + AluSx SINE Alu 1 301 -11 2108 111 38 7 chr3 209037883 209038172 -18486406 - AluSc SINE Alu -11 298 1 2266 95 0 3 chr3 209038711 209039022 -18485556 + AluSq SINE Alu 1 310 0 1499 112 189 42 chr3 209039391 209039651 -18484927 - AluSx SINE Alu 0 302 5 506 274 82 47 chr3 209040165 209040420 -18484158 + L1ME4a LINE L1 5597 5867 -254 2390 100 0 0 chr3 209040420 209040720 -18483858 - AluSx SINE Alu -12 300 1 506 274 82 47 chr3 209040720 209040782 -18483796 + L1ME4a LINE L1 5867 5925 -196 2405 98 0 0 chr3 209041274 209041571 -18483007 + AluSg SINE Alu 1 297 -13 621 233 98 12 chr3 209042227 209042390 -18482188 + MIR SINE MIR 80 256 -6 2321 106 0 0 chr3 209042473 209042775 -18481803 - AluSx SINE Alu -10 302 1 2480 75 0 3 chr3 209043063 209043368 -18481210 + AluSc SINE Alu 1 304 -5 234 0 0 0 chr3 209043462 209043488 -18481090 + (TG)n Simple_repeat Simple_repeat 1 26 0 213 292 58 42 chr3 209043508 209043628 -18480950 + L2 LINE L2 1501 1622 -1692 288 67 17 67 chr3 209043645 209043705 -18480873 - AluSp/q SINE Alu -20 283 227 2044 62 0 4 chr3 209043917 209044158 -18480420 + AluY SINE Alu 55 294 -17 1231 197 53 68 chr3 209044303 209044683 -18479895 - MLT1A2 LTR MaLR 0 374 1 2008 104 35 28 chr3 209044869 209045158 -18479420 + AluSx SINE Alu 1 291 -21 2264 93 0 3 chr3 209045191 209045482 -18479096 + AluSg SINE Alu 1 290 -20 770 54 0 0 chr3 209045493 209045586 -18478992 + AluS SINE Alu 2 94 -218 896 111 0 0 chr3 209045854 209045971 -18478607 + AluJb SINE Alu 1 117 -195 2174 92 46 0 chr3 209046365 209046647 -18477931 - AluSx SINE Alu -17 295 1 2139 105 10 14 chr3 209047482 209047778 -18476800 - AluSx SINE Alu -7 305 11 736 173 0 0 chr3 209047878 209047988 -18476590 - AluJb SINE Alu -201 111 2 591 200 9 17 chr3 209047989 209048104 -18476474 - MIR SINE MIR -112 150 37 2209 117 0 23 chr3 209049037 209049346 -18475232 + AluSx SINE Alu 1 302 -10 1656 164 69 13 chr3 209049427 209049744 -18474834 + MER44D DNA MER2_type 1 605 -4 1868 193 62 33 chr3 209049789 209050239 -18474339 - MLT1C LTR MaLR 0 467 5 957 126 57 38 chr3 209050753 209050912 -18473666 + AluJb SINE Alu 1 162 -150 2255 113 0 0 chr3 209051212 209051520 -18473058 - AluSx SINE Alu 0 308 1 2471 77 3 0 chr3 209052259 209052558 -18472020 + AluSq SINE Alu 1 300 -13 2427 75 3 0 chr3 209053613 209053905 -18470673 - AluSc SINE Alu -16 293 1 300 210 37 49 chr3 209053905 209053976 -18470602 - MIR3 SINE MIR -12 196 125 2567 71 0 0 chr3 209054237 209054547 -18470031 + AluY SINE Alu 2 311 0 201 213 85 0 chr3 209055241 209055288 -18469290 - L2 LINE L2 -2102 1212 1162 271 333 104 68 chr3 209055336 209055760 -18468818 + L2 LINE L2 2830 3268 -4 436 277 26 45 chr3 209055875 209056030 -18468548 - MIR SINE MIR -1 261 110 2055 140 0 13 chr3 209056051 209056365 -18468213 + AluSx SINE Alu 1 310 -2 2351 110 0 0 chr3 209056730 209057030 -18467548 - AluSx SINE Alu -12 300 1 2253 84 0 3 chr3 209057956 209058281 -18466297 - AluSp SINE Alu 0 324 1 2020 126 0 4 chr3 209058289 209058613 -18465965 - AluSx SINE Alu 0 333 11 1589 89 5 0 chr3 209060820 209061022 -18463556 + AluSg/x SINE Alu 104 306 -4 490 242 53 15 chr3 209061170 209061302 -18463276 - MER3 DNA MER1_type -68 141 5 281 170 32 16 chr3 209061378 209061441 -18463137 - Alu SINE Alu -260 48 1 268 326 10 10 chr3 209061705 209061803 -18462775 - MLT1J2 LTR MaLR -243 207 110 493 299 78 29 chr3 209061809 209062013 -18462565 - MIR SINE MIR -29 233 20 231 257 18 138 chr3 209062013 209062122 -18462456 + MIR3 SINE MIR 104 199 -9 217 311 208 0 chr3 209062836 209062942 -18461636 - L2 LINE L2 -11 3261 3134 2324 89 16 22 chr3 209063634 209063948 -18460630 + AluSq SINE Alu 1 312 -1 2201 120 10 0 chr3 209064156 209064456 -18460122 - AluSx SINE Alu -9 303 1 25 0 0 0 chr3 209064459 209064484 -18460094 + AT_rich Low_complexity Low_complexity 1 25 0 284 239 177 23 chr3 209065820 209065950 -18458628 + MIR3 SINE MIR 1 150 -58 2358 91 10 0 chr3 209066067 209066364 -18458214 - AluSx SINE Alu -12 300 1 232 61 0 0 chr3 209066891 209066924 -18457654 + Alu SINE Alu 1 33 -270 202 297 54 0 chr3 209067232 209067306 -18457272 - MIR SINE MIR -40 222 145 972 139 6 12 chr3 209067460 209067626 -18456952 - L1MB3 LINE L1 -7 6176 6012 2346 100 0 3 chr3 209067719 209068020 -18456558 - AluSg SINE Alu -10 300 1 289 214 0 14 chr3 209068020 209068090 -18456488 + LTR33 LTR ERVL 438 506 -15 578 215 20 47 chr3 209068097 209068246 -18456332 - MIR SINE MIR -84 178 34 908 178 18 0 chr3 209068275 209068438 -18456140 + FRAM SINE Alu 1 164 -12 186 43 0 0 chr3 209068439 209068462 -18456116 + (GA)n Simple_repeat Simple_repeat 1 23 0 305 331 40 27 chr3 209068464 209068612 -18455966 + HAL1 LINE L1 1140 1289 -1218 1375 84 52 31 chr3 209068614 209068805 -18455773 + AluSq SINE Alu 1 195 -118 364 122 14 14 chr3 209068811 209068885 -18455693 + (GA)n Simple_repeat Simple_repeat 1 74 0 228 244 187 8 chr3 209069702 209069793 -18454785 + MIR SINE MIR 35 148 -60 285 89 0 22 chr3 209070253 209070298 -18454280 + MIR SINE MIR 16 59 -149 2335 96 6 16 chr3 209070329 209070642 -18453936 - AluSx SINE Alu -2 310 1 207 274 59 59 chr3 209070644 209070746 -18453832 + MIR SINE MIR 117 218 -44 407 314 43 33 chr3 209071243 209071453 -18453125 + MIR SINE MIR 31 242 -20 2111 127 3 22 chr3 209071492 209071808 -18452770 - AluSx SINE Alu -2 310 1 1959 111 0 80 chr3 209072484 209072809 -18451769 + AluSx SINE Alu 1 299 -13 2544 64 0 0 chr3 209073480 209073778 -18450800 - AluY SINE Alu -13 298 1 2136 125 10 0 chr3 209073986 209074282 -18450296 + AluSq SINE Alu 1 299 -14 707 221 84 0 chr3 209074622 209074812 -18449766 - L1MA4 LINE L1 -11 6289 6084 2036 131 45 0 chr3 209075032 209075323 -18449255 + AluSg SINE Alu 1 304 -6 2133 137 12 21 chr3 209075463 209075800 -18448778 - MER1B DNA MER1_type 0 337 4 1605 187 3 14 chr3 209075985 209076279 -18448299 - AluJo SINE Alu -21 291 1 2554 59 3 0 chr3 209076504 209076809 -18447769 - AluY SINE Alu -5 306 1 853 154 0 0 chr3 209077568 209077698 -18446880 + FLAM_C SINE Alu 4 133 0 559 204 68 93 chr3 209077799 209078078 -18446500 - L1MC5 LINE L1 -30 7931 7660 323 332 109 10 chr3 209078170 209078363 -18446215 - MIR SINE MIR -44 218 7 380 243 62 62 chr3 209078928 209079072 -18445506 - MIR SINE MIR -113 149 6 1750 158 25 4 chr3 209079241 209079519 -18445059 + AluSx SINE Alu 12 295 -17 290 318 71 45 chr3 209079812 209080010 -18444568 + L2 LINE L2 3111 3313 0 2347 80 10 10 chr3 209080189 209080490 -18444088 + AluSx SINE Alu 1 301 -11 235 149 0 0 chr3 209081274 209081321 -18443257 - LTR66 LTR ERVL -169 441 395 346 298 0 33 chr3 209081321 209081442 -18443136 + L1MC4 LINE L1 6614 6703 -1339 240 35 0 0 chr3 209081444 209081473 -18443105 + (GA)n Simple_repeat Simple_repeat 2 30 0 412 218 161 0 chr3 209081666 209081790 -18442788 - MER58C DNA MER1_type -14 201 58 242 267 93 13 chr3 209081803 209081878 -18442700 + MER5A DNA MER1_type 17 97 -92 2204 101 0 10 chr3 209082303 209082599 -18441979 - AluSx SINE Alu -19 293 1 281 288 23 76 chr3 209082762 209082894 -18441684 - MER5A DNA MER1_type -25 164 40 2035 93 67 4 chr3 209083762 209084032 -18440546 + AluSx SINE Alu 14 300 -12 1168 48 15 29 chr3 209084824 209085030 -18439548 + SVA Other Other 664 866 -520 1168 122 17 93 chr3 209085058 209085475 -18439103 + SVA Other Other 480 864 -522 686 248 5 24 chr3 209085493 209085699 -18438879 + SVA Other Other 665 866 -520 21 0 0 0 chr3 209086485 209086506 -18438072 + AT_rich Low_complexity Low_complexity 1 21 0 1875 128 0 0 chr3 209086774 209087032 -18437546 - AluSx SINE Alu -6 306 49 2231 43 0 4 chr3 209087032 209087288 -18437290 - AluY SINE Alu -56 255 1 1176 182 10 5 chr3 209087296 209087518 -18437060 - AluJb SINE Alu 0 308 86 325 204 0 0 chr3 209087654 209087708 -18436870 + AluJ/monomer SINE Alu 2 55 -247 2347 113 0 0 chr3 209087845 209088147 -18436431 - AluSg SINE Alu -8 302 1 222 327 59 59 chr3 209089110 209089263 -18435315 + MIR SINE MIR 14 166 -96 233 302 12 23 chr3 209089518 209089604 -18434974 - MER5A DNA MER1_type -67 122 38 1092 156 0 17 chr3 209089802 209089981 -18434597 + AluSg/x SINE Alu 135 310 0 485 172 213 4 chr3 209090128 209090293 -18434285 - L1MC4a LINE L1 0 7995 7631 230 253 127 25 chr3 209090468 209090547 -18434031 - L2 LINE L2 -8 3264 3178 211 277 108 0 chr3 209090558 209090623 -18433955 - L2 LINE L2 -51 3262 3191 1803 163 21 10 chr3 209090645 209090934 -18433644 + AluJo SINE Alu 1 292 -20 2135 137 0 29 chr3 209090956 209091270 -18433308 + AluSx SINE Alu 1 305 -7 185 256 26 0 chr3 209091864 209091903 -18432675 - MIR SINE MIR -111 151 112 539 261 154 11 chr3 209091919 209092107 -18432471 + MIR SINE MIR 23 237 -25 579 177 0 0 chr3 209092242 209092338 -18432240 + FRAM SINE Alu 68 163 -13 990 133 0 7 chr3 209092388 209092531 -18432047 - AluJo SINE Alu -170 142 1 1329 237 102 52 chr3 209092532 209093211 -18431367 - L1MDa LINE L1 -5417 1123 69 2010 117 25 7 chr3 209093322 209093603 -18430975 + AluSx SINE Alu 3 288 -24 26 0 0 0 chr3 209093915 209093941 -18430637 + AT_rich Low_complexity Low_complexity 1 26 0 2405 93 3 0 chr3 209094113 209094415 -18430163 - AluSp SINE Alu -9 304 2 1706 120 113 22 chr3 209094492 209094767 -18429811 - AluSg1 SINE Alu -9 300 1 2164 117 3 40 chr3 209095265 209095589 -18428989 - AluSq SINE Alu -1 312 1 611 234 154 25 chr3 209095628 209095914 -18428664 - L1ME1 LINE L1 -17 6149 5827 947 169 49 5 chr3 209095914 209096098 -18428480 - AluJo SINE Alu -10 302 111 192 231 26 0 chr3 209097333 209097372 -18427206 - L2 LINE L2 -18 3254 3215 389 238 79 0 chr3 209097385 209097486 -18427092 - MIR SINE MIR -105 157 49 23 0 0 0 chr3 209097792 209097815 -18426763 + AT_rich Low_complexity Low_complexity 1 23 0 2622 53 0 3 chr3 209097829 209098131 -18426447 + AluY SINE Alu 1 301 -10 349 227 270 6 chr3 209098717 209098880 -18425698 - MIR SINE MIR 0 262 57 2277 103 3 0 chr3 209099072 209099364 -18425214 + AluSx SINE Alu 1 293 -19 373 245 38 38 chr3 209099958 209100064 -18424514 + MIR SINE MIR 23 128 -134 261 300 100 7 chr3 209100289 209100429 -18424149 + MIR SINE MIR 70 222 -40 197 213 133 27 chr3 209101882 209101957 -18422621 - MIR3 SINE MIR -41 167 85 1668 131 84 11 chr3 209102888 209102909 -18421669 - AluJo SINE Alu -18 294 276 198 0 0 0 chr3 209102909 209102931 -18421647 + (TC)n Simple_repeat Simple_repeat 1 22 0 1668 131 84 11 chr3 209102931 209103183 -18421395 - AluJo SINE Alu -36 276 1 198 276 20 31 chr3 209103188 209103286 -18421292 + L2 LINE L2 2771 2867 -447 195 300 17 0 chr3 209103414 209103474 -18421104 + L2 LINE L2 3211 3271 -1 245 124 0 124 chr3 209104690 209104803 -18419775 + (CGGGGG)n Simple_repeat Simple_repeat 2 100 0 21 89 0 0 chr3 209104923 209104979 -18419599 + GC_rich Low_complexity Low_complexity 1 56 0 29 28 0 0 chr3 209105056 209105092 -18419486 + GC_rich Low_complexity Low_complexity 1 36 0 242 206 59 0 chr3 209105760 209105828 -18418750 - L1ME4a LINE L1 0 6121 6050 300 281 20 72 chr3 209105961 209106114 -18418464 - L1ME4a LINE L1 -271 5850 5706 232 260 82 0 chr3 209106097 209106170 -18418408 + L1ME1 LINE L1 5587 5665 -2143 * 1313 89 11 17 chr3 209106544 209106724 -18417854 - AluSg/x SINE Alu -14 296 118 837 166 7 7 chr3 209106864 209107003 -18417575 + AluJb SINE Alu 156 294 -18 426 335 24 0 chr3 209107007 209107171 -18417407 - L3 LINE CR1 -109 1468 1301 442 234 14 35 chr3 209107381 209107526 -18417052 + L1ME1 LINE L1 6018 6159 -7 193 56 28 28 chr3 209107550 209107586 -18416992 + (TTG)n Simple_repeat Simple_repeat 1 36 0 1430 165 74 0 chr3 209107586 209107711 -18416867 - AluJb SINE Alu -52 260 146 381 75 0 0 chr3 209107711 209107764 -18416814 + (TG)n Simple_repeat Simple_repeat 2 54 0 1430 165 74 0 chr3 209107764 209107880 -18416698 - AluJb SINE Alu -166 146 1 329 267 48 9 chr3 209107913 209108018 -18416560 + L1ME4a LINE L1 5607 5715 -406 1049 90 23 0 chr3 209108043 209108176 -18416402 + AluSq/x SINE Alu 1 136 -177 2045 105 56 0 chr3 209108176 209108462 -18416116 + AluSg SINE Alu 1 302 -8 207 173 49 74 chr3 209108547 209108628 -18415950 + L2 LINE L2 338 416 -2898 * 232 275 257 0 chr3 209108627 209108736 -18415842 - MIR SINE MIR -116 146 10 2447 54 0 44 chr3 209108888 209109067 -18415511 - AluSc SINE Alu -8 301 140 2353 88 0 25 chr3 209109067 209109386 -18415192 - AluY SINE Alu 0 311 1 2447 54 0 44 chr3 209109386 209109521 -18415057 - AluSc SINE Alu -169 140 1 266 284 194 3 chr3 209110173 209110301 -18414277 - MIR SINE MIR -62 146 29 241 296 105 56 chr3 209113394 209113556 -18411022 - L3 LINE CR1 -16 1561 1392 1605 142 43 43 chr3 209114856 209114990 -18409588 - AluJo SINE Alu -30 282 149 1847 96 96 11 chr3 209114990 209115261 -18409317 - AluSx SINE Alu -18 294 1 1605 142 43 43 chr3 209115261 209115408 -18409170 - AluJo SINE Alu -162 150 1 385 258 116 58 chr3 209115570 209115725 -18408853 + L1ME4a LINE L1 5934 6097 -24 533 100 0 2 chr3 209115753 209115964 -18408614 + AluSx SINE Alu 1 257 -53 1820 90 0 0 chr3 209116064 209116287 -18408291 - AluSc SINE Alu -86 223 1 2200 97 3 7 chr3 209117763 209118051 -18406527 - AluSx SINE Alu -25 287 1 367 310 134 23 chr3 209120318 209120534 -18404044 + MIR SINE MIR 2 241 -21 2317 95 3 3 chr3 209121123 209121429 -18403149 - AluSx SINE Alu -6 306 1 187 200 0 0 chr3 209123250 209123285 -18401293 + MIR3 SINE MIR 172 206 -2 353 209 26 52 chr3 209123462 209123577 -18401001 - L1ME4a LINE L1 -41 6080 5969 365 145 0 58 chr3 209123750 209123819 -18400759 - Tigger5 DNA MER2_type 0 2323 2259 * 398 123 27 14 chr3 209123810 209123883 -18400695 + Tigger5 DNA MER2_type 2242 2315 -8 313 236 11 56 chr3 209123881 209123970 -18400608 - Tigger5 DNA MER2_type -2238 85 1 * 1794 152 54 0 chr3 209124205 209124482 -18400096 - AluJb SINE Alu -20 292 1 1945 140 10 10 chr3 209124585 209124885 -18399693 - AluJb SINE Alu -12 300 1 2273 97 0 6 chr3 209124986 209125297 -18399281 - AluY SINE Alu -2 309 1 2188 110 0 0 chr3 209127074 209127355 -18397223 - AluSx SINE Alu -31 281 1 351 263 12 0 chr3 209127355 209127435 -18397143 + MIR3 SINE MIR 122 202 -6 207 0 0 0 chr3 209127448 209127492 -18397086 + (CA)n Simple_repeat Simple_repeat 1 67 0 207 0 0 0 chr3 209127492 209127515 -18397063 + (CA)n Simple_repeat Simple_repeat 2 24 0 521 318 54 9 chr3 209127951 209128174 -18396404 + MIR SINE MIR 20 252 -10 2701 55 0 0 chr3 209129871 209130182 -18394396 + AluY SINE Alu 1 311 0 2324 114 0 0 chr3 209131349 209131657 -18392921 + AluSx SINE Alu 1 308 -4 946 151 66 0 chr3 209132270 209132422 -18392156 - AluSg/x SINE Alu -13 299 138 288 0 0 0 chr3 209132426 209132458 -18392120 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1484 147 38 62 chr3 209132461 209132714 -18391864 - AluJo SINE Alu -27 285 38 2310 106 3 0 chr3 209132714 209133016 -18391562 - AluSx SINE Alu -9 303 1 1484 147 38 62 chr3 209133016 209133054 -18391524 - AluJo SINE Alu -274 38 1 239 200 44 56 chr3 209133108 209133198 -18391380 - L1ME4a LINE L1 -72 6049 5961 2396 76 0 47 chr3 209133705 209134022 -18390556 + AluSq SINE Alu 1 302 -11 369 306 16 61 chr3 209134230 209134402 -18390176 - HAL1 LINE L1 -17 2490 2331 1602 174 3 50 chr3 209134402 209134724 -18389854 + AluJo SINE Alu 1 307 -5 369 306 16 61 chr3 209134724 209134796 -18389782 - HAL1 LINE L1 -176 2331 2257 1899 172 6 13 chr3 209134801 209135115 -18389463 - AluJb SINE Alu 0 312 1 381 193 36 4 chr3 209135246 209135383 -18389195 + Tigger5 DNA MER2_type 1 194 -2129 228 226 16 32 chr3 209135380 209135442 -18389136 + Tigger5 DNA MER2_type 2244 2304 -19 * 321 317 134 0 chr3 209135458 209135644 -18388934 - HAL1 LINE L1 -816 1691 1481 574 237 175 18 chr3 209135762 209135990 -18388588 + L2 LINE L2 2623 2886 -428 2389 113 0 0 chr3 209136090 209136401 -18388177 + AluSq SINE Alu 1 311 -2 361 213 172 5 chr3 209136851 209137028 -18387550 + MER5C DNA MER1_type 25 321 -3 386 280 58 66 chr3 209137031 209137194 -18387384 - MER46C DNA MER2_type -94 244 81 2109 104 38 0 chr3 209137194 209137481 -18387097 + AluSx SINE Alu 1 298 -14 386 280 58 66 chr3 209137481 209137504 -18387074 - MER46C DNA MER2_type -257 81 59 2920 54 0 13 chr3 209137504 209137876 -18386702 + L1PA8 LINE L1 5805 6171 -1 386 280 58 66 chr3 209137876 209137931 -18386647 - MER46C DNA MER2_type -279 59 4 472 234 47 8 chr3 209137974 209138102 -18386476 - MIR SINE MIR -14 248 116 1837 177 0 3 chr3 209138668 209138968 -18385610 + AluJb SINE Alu 1 299 -13 249 317 63 39 chr3 209139855 209140046 -18384532 - L2 LINE L2 -284 2988 2793 926 205 65 41 chr3 209140048 209140164 -18384414 + L1MB7 LINE L1 4871 4983 -1163 2385 96 0 16 chr3 209140164 209140477 -18384101 + AluSg SINE Alu 1 308 -2 926 205 65 41 chr3 209140477 209140653 -18383925 + L1MB7 LINE L1 4983 5170 -976 * 5783 144 43 7 chr3 209140633 209141982 -18382596 + L1MA3 LINE L1 4902 6300 -5 22 0 0 30 chr3 209141982 209141994 -18382584 + AT_rich Low_complexity Low_complexity 1 12 -20 2261 72 3 24 chr3 209141994 209142287 -18382291 - AluY SINE Alu -24 287 1 22 0 0 30 chr3 209142287 209142307 -18382271 + AT_rich Low_complexity Low_complexity 12 32 0 3959 177 70 11 chr3 209142316 209142751 -18381827 + L1MB7 LINE L1 5149 5557 -627 2290 92 7 3 chr3 209142751 209143046 -18381532 + AluSc SINE Alu 1 296 -13 3959 177 70 11 chr3 209143046 209143570 -18381008 + L1MB7 LINE L1 5557 6154 -30 1323 140 0 82 chr3 209144322 209144493 -18380085 - AluJo SINE Alu -5 307 160 2504 56 0 16 chr3 209144493 209144798 -18379780 - AluSc SINE Alu -9 300 1 1323 140 0 82 chr3 209144798 209144869 -18379709 - AluJo SINE Alu -152 160 85 2315 96 3 0 chr3 209144920 209145211 -18379367 - AluSx SINE Alu -20 292 1 278 179 157 11 chr3 209145258 209145351 -18379227 - MER58A DNA MER1_type -16 91 46 4452 116 97 37 chr3 209145351 209145817 -18378761 + L1PA16 LINE L1 5099 5536 -630 1316 160 168 0 chr3 209145817 209146073 -18378505 + AluJb SINE Alu 1 299 -13 4452 116 97 37 chr3 209146073 209146606 -18377972 + L1PA16 LINE L1 5536 6165 -1 282 224 141 87 chr3 209146705 209146900 -18377678 - MIR SINE MIR -9 253 50 1499 214 114 47 chr3 209146937 209147279 -18377299 + L1ME2 LINE L1 5419 5737 -427 2309 112 0 0 chr3 209147279 209147584 -18376994 + AluSq SINE Alu 1 305 -8 2497 79 3 0 chr3 209147594 209147899 -18376679 + AluSq SINE Alu 1 306 -7 1499 214 114 47 chr3 209147899 209148072 -18376506 + L1ME2 LINE L1 5745 5980 -184 1155 179 24 5 chr3 209148087 209148294 -18376284 - AluJo SINE Alu -17 295 85 2681 142 63 32 chr3 209148431 209148923 -18375655 + MLT2B2 LTR ERVL 1 507 -8 629 305 151 34 chr3 209148927 209149396 -18375182 - L1M4 LINE L1 -3194 2952 2429 806 165 30 12 chr3 209149795 209149959 -18374619 - Charlie1 DNA MER1_type -393 2368 2202 212 175 0 0 chr3 209149967 209150007 -18374571 + A-rich Low_complexity Low_complexity 1 40 0 2263 91 0 0 chr3 209150007 209150326 -18374252 + AluSc SINE Alu 1 309 0 628 305 30 0 chr3 209150363 209150563 -18374015 + L1MCc LINE L1 19 224 -6199 332 212 62 8 chr3 209150670 209150792 -18373786 + L1M4 LINE L1 3166 3299 -2847 1567 114 0 0 chr3 209150794 209151004 -18373574 + AluSg SINE Alu 1 210 -100 776 221 77 53 chr3 209151051 209151350 -18373228 + L1M4 LINE L1 3438 3743 -2403 1266 94 23 0 chr3 209151350 209151521 -18373057 + AluSp SINE Alu 1 175 -138 2266 93 0 28 chr3 209151861 209152182 -18372396 - AluSx SINE Alu 0 312 1 202 319 36 65 chr3 209152977 209153026 -18371552 + MIR SINE MIR 7 56 -206 2134 112 7 3 chr3 209153026 209153331 -18371247 - AluSx SINE Alu -6 306 1 202 319 36 65 chr3 209153331 209153419 -18371159 + MIR SINE MIR 56 140 -122 1946 132 0 14 chr3 209153446 209153741 -18370837 - AluJb SINE Alu -21 291 1 282 195 0 0 chr3 209153957 209154044 -18370534 + CT-rich Low_complexity Low_complexity 1 87 0 2181 84 3 0 chr3 209154399 209154684 -18369894 - AluSc SINE Alu -23 286 1 1979 119 3 14 chr3 209155497 209155783 -18368795 - MER1B DNA MER1_type 0 339 57 551 252 23 8 chr3 209156601 209156732 -18367846 - MER94 DNA DNA 0 134 2 1621 141 8 118 chr3 209156814 209157196 -18367382 - MER2 DNA MER2_type -3 341 2 375 23 0 0 chr3 209157201 209157245 -18367333 + (TG)n Simple_repeat Simple_repeat 2 45 0 2178 110 0 0 chr3 209157977 209158277 -18366301 + AluSx SINE Alu 1 300 -12 1004 118 31 12 chr3 209158289 209158450 -18366128 + FRAM SINE Alu 11 174 -2 22 35 0 0 chr3 209158456 209158485 -18366093 + AT_rich Low_complexity Low_complexity 1 29 0 436 343 59 14 chr3 209158769 209159055 -18365523 + L1MC/D LINE L1 5449 5747 -2061 2313 53 40 0 chr3 209159590 209159889 -18364689 - AluY SINE Alu 0 311 1 1629 159 28 3 chr3 209160103 209160386 -18364192 + AluJo SINE Alu 1 290 -22 1442 132 0 0 chr3 209160394 209160606 -18363972 + AluSg SINE Alu 1 212 -98 37 52 0 0 chr3 209160644 209160702 -18363876 + GC_rich Low_complexity Low_complexity 1 58 0 1312 93 0 11 chr3 209161153 209161335 -18363243 + AluSg/x SINE Alu 131 310 0 300 302 187 11 chr3 209161366 209161548 -18363030 + MIR SINE MIR 49 262 0 253 298 0 0 chr3 209161747 209161804 -18362774 + MIR SINE MIR 89 145 -63 262 0 116 0 chr3 209161877 209161920 -18362658 + T-rich Low_complexity Low_complexity 1 48 0 2105 87 0 4 chr3 209161921 209162197 -18362381 - AluSx SINE Alu -32 280 6 354 342 87 25 chr3 209162811 209163007 -18361571 - L1ME4a LINE L1 -3 6118 5911 2239 94 0 7 chr3 209163183 209163491 -18361087 + AluY SINE Alu 1 306 -5 27 0 0 0 chr3 209163611 209163638 -18360940 + AT_rich Low_complexity Low_complexity 1 27 0 2135 72 7 0 chr3 209163800 209164098 -18360480 - AluSg1 SINE Alu 0 300 1 553 249 67 24 chr3 209164196 209164361 -18360217 - MIR SINE MIR 0 262 91 948 92 11 38 chr3 209164590 209164775 -18359803 + (TTTC)n Simple_repeat Simple_repeat 1 180 0 504 48 0 0 chr3 209164790 209164853 -18359725 + (TTCC)n Simple_repeat Simple_repeat 3 65 0 1919 126 10 23 chr3 209164853 209165155 -18359423 - AluSx SINE Alu -14 298 1 328 262 48 0 chr3 209165476 209165560 -18359018 + L2 LINE L2 3185 3272 0 629 265 53 0 chr3 209165726 209165858 -18358720 + MER74A LTR ERVL 31 169 -389 634 182 22 3 chr3 209165858 209166093 -18358485 - LTR25 LTR ERV1 0 791 288 414 127 0 16 chr3 209166088 209166151 -18358427 - MER61D LTR ERV1 -438 63 2 * 1921 181 4 2 chr3 209166151 209166472 -18358106 + MER74A LTR ERVL 91 487 -71 1807 73 0 20 chr3 209166516 209166762 -18357816 - L1PA8 LINE L1 0 6172 5932 355 154 39 39 chr3 209166762 209166840 -18357738 + MER74A LTR ERVL 481 558 0 374 273 0 0 chr3 209167145 209167233 -18357345 - MIR3 SINE MIR -22 186 99 21 0 0 0 chr3 209168581 209168602 -18355976 + AT_rich Low_complexity Low_complexity 1 21 0 2179 95 0 20 chr3 209169007 209169312 -18355266 - AluSx SINE Alu -7 305 7 2157 69 31 3 chr3 209169391 209169679 -18354899 - AluY SINE Alu -14 297 2 225 0 0 0 chr3 209169682 209169707 -18354871 + (T)n Simple_repeat Simple_repeat 1 25 0 360 0 0 0 chr3 209169746 209169786 -18354792 + (TG)n Simple_repeat Simple_repeat 2 41 0 303 225 0 0 chr3 209171720 209171791 -18352787 + CT-rich Low_complexity Low_complexity 2 72 0 2046 114 6 25 chr3 209171791 209172107 -18352471 - AluY SINE Alu -1 310 1 2156 99 0 0 chr3 209172547 209172841 -18351737 - AluSg SINE Alu -16 294 1 787 228 34 32 chr3 209173894 209174145 -18350433 + MIR SINE MIR 1 259 -3 864 266 21 113 chr3 209174261 209174300 -18350278 + L2 LINE L2 2926 2967 -305 919 217 16 0 chr3 209174300 209174484 -18350094 - MER5A DNA MER1_type -2 187 1 864 266 21 113 chr3 209174484 209174824 -18349754 + L2 LINE L2 2967 3270 -2 772 53 0 0 chr3 209174903 209174997 -18349581 - AluSq/x SINE Alu -206 107 14 1232 134 0 0 chr3 209174997 209175184 -18349394 + AluSq SINE Alu 122 308 -5 1424 244 51 2 chr3 209175443 209175852 -18348726 - L1MEc LINE L1 -3399 2816 2388 2001 120 0 0 chr3 209175852 209176180 -18348398 - AluSg SINE Alu 0 328 1 489 125 164 17 chr3 209176187 209176305 -18348273 - L1MB8 LINE L1 0 6184 6050 2022 120 0 0 chr3 209176306 209176589 -18347989 + AluSx SINE Alu 1 283 -29 6690 37 2 0 chr3 209176590 209177383 -18347195 + L1PA4 LINE L1 5358 6152 -3 198 0 0 0 chr3 209177386 209177408 -18347170 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 254 0 0 80 chr3 209177423 209177473 -18347105 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 5838 77 21 60 chr3 209177590 209178582 -18345996 - SVA Other Other -3 1383 430 1206 97 37 97 chr3 209178643 209179105 -18345473 - SVA Other Other -520 866 433 5231 84 31 10 chr3 209179125 209179925 -18344653 - SVA Other Other -520 866 50 270 0 0 0 chr3 209179930 209179960 -18344618 + (GGGAGA)n Simple_repeat Simple_repeat 2 31 0 3255 233 88 58 chr3 209179964 209180906 -18343672 - L1MEc LINE L1 -4017 2379 1466 405 0 0 0 chr3 209180906 209180951 -18343627 + (TG)n Simple_repeat Simple_repeat 2 46 0 3255 233 88 58 chr3 209180951 209181252 -18343326 - L1MEc LINE L1 -4930 1466 1175 2392 48 0 0 chr3 209181252 209181544 -18343034 - AluY SINE Alu -19 292 1 3255 233 88 58 chr3 209181544 209181821 -18342757 - L1MEc LINE L1 -5221 1175 813 568 196 37 0 chr3 209181824 209181931 -18342647 - FLAM_A SINE Alu -22 120 10 654 306 31 19 chr3 209181944 209182264 -18342314 - L1MEc LINE L1 -5575 821 498 220 276 0 0 chr3 209182274 209182332 -18342246 + MIR SINE MIR 150 207 -55 491 199 167 19 chr3 209182340 209182496 -18342082 + L1ME3A LINE L1 5991 6169 -1 215 205 26 0 chr3 209182510 209182549 -18342029 + L2 LINE L2 3216 3255 -17 471 231 8 8 chr3 209182646 209182767 -18341811 - L1ME3A LINE L1 -5 6165 6045 1908 114 0 45 chr3 209183484 209183792 -18340786 - AluSx SINE Alu -18 294 1 1297 39 0 0 chr3 209183865 209184021 -18340557 + L1PA5 LINE L1 5999 6154 0 1988 129 6 6 chr3 209184207 209184518 -18340060 + AluSx SINE Alu 1 311 -1 2432 68 0 7 chr3 209185018 209185328 -18339250 + AluSp SINE Alu 1 308 -5 294 275 83 50 chr3 209185559 209185679 -18338899 + MIR SINE MIR 16 139 -69 764 317 45 10 chr3 209185862 209186171 -18338407 + L1MEc LINE L1 109 428 -5968 2076 241 52 21 chr3 209186179 209186981 -18337597 + L1MEc LINE L1 706 1532 -4864 45 62 0 0 chr3 209187128 209187208 -18337370 + AT_rich Low_complexity Low_complexity 1 80 0 509 140 21 0 chr3 209187355 209187448 -18337130 + CT-rich Low_complexity Low_complexity 2 96 0 1572 195 16 7 chr3 209187448 209187756 -18336822 - AluJo SINE Alu -1 311 1 293 224 13 40 chr3 209188452 209188528 -18336050 - MLT1K LTR MaLR -325 263 190 1387 258 142 15 chr3 209188732 209189259 -18335319 - MER50 LTR ERV1 -130 604 11 2370 129 14 19 chr3 209189261 209189626 -18334952 - MER50-int LTR ERV1 -3 7202 6840 781 138 7 69 chr3 209189604 209189749 -18334829 - MER50-int LTR ERV1 -985 6220 6085 * 869 175 284 9 chr3 209189888 209190117 -18334461 + AluJo SINE Alu 21 312 0 2175 85 0 0 chr3 209190234 209190517 -18334061 - AluY SINE Alu -16 295 13 4121 153 85 14 chr3 209190607 209190911 -18333667 - LTR39 LTR ERV1 0 783 502 2330 107 72 55 chr3 209190911 209191078 -18333500 - MSTA LTR MaLR 0 428 265 2325 101 0 0 chr3 209191078 209191385 -18333193 - AluSp SINE Alu -5 308 2 2330 107 72 55 chr3 209191385 209191636 -18332942 - MSTA LTR MaLR -163 265 3 4121 153 85 14 chr3 209191636 209192062 -18332516 - LTR39 LTR ERV1 -281 502 1 1715 134 39 30 chr3 209193148 209193413 -18331165 + AluSx SINE Alu 5 275 -37 252 0 0 0 chr3 209193413 209193441 -18331137 + (CAAA)n Simple_repeat Simple_repeat 1 28 0 1715 134 39 30 chr3 209193441 209193480 -18331098 + AluSx SINE Alu 275 312 0 435 288 73 6 chr3 209193546 209193723 -18330855 + L2 LINE L2 1636 1824 -1490 574 275 188 47 chr3 209193743 209194030 -18330548 - MLT1L LTR MaLR -9 606 238 2147 113 7 0 chr3 209194030 209194331 -18330247 + AluSx SINE Alu 1 303 -9 574 275 188 47 chr3 209194331 209194468 -18330110 - MLT1L LTR MaLR -377 238 122 234 307 153 20 chr3 209194539 209194689 -18329889 + L2 LINE L2 1853 2022 -1292 1493 299 86 58 chr3 209195989 209196491 -18328087 + L2 LINE L2 2186 2673 -640 2179 103 0 13 chr3 209196491 209196803 -18327775 - AluSx SINE Alu -4 308 1 1493 299 86 58 chr3 209196803 209197167 -18327411 + L2 LINE L2 2673 3063 -250 1691 177 0 7 chr3 209197167 209197477 -18327101 - AluJo SINE Alu -4 308 1 1493 299 86 58 chr3 209197477 209197736 -18326842 + L2 LINE L2 3063 3313 0 669 159 18 0 chr3 209198909 209199054 -18325524 + FLAM_A SINE Alu 1 147 0 1323 285 12 43 chr3 209199121 209199599 -18324979 - MLT1K LTR MaLR -24 564 3 2122 112 0 3 chr3 209199880 209200184 -18324394 - AluSg SINE Alu -7 303 1 460 281 15 75 chr3 209200495 209200694 -18323884 - MER5A DNA MER1_type 0 189 3 730 234 146 28 chr3 209201606 209201927 -18322651 - L2 LINE L2 0 3313 2955 538 244 86 50 chr3 209202921 209203162 -18321416 - MIR SINE MIR -17 245 1 295 250 110 15 chr3 209203292 209203428 -18321150 + LTR16A1 LTR ERVL 220 368 -89 2143 80 7 0 chr3 209203537 209203824 -18320754 + AluY SINE Alu 1 289 -22 599 163 20 0 chr3 209204267 209204365 -18320213 + MER33 DNA MER1_type 1 100 -224 2246 89 0 0 chr3 209204368 209204660 -18319918 + AluSg SINE Alu 1 292 -18 353 164 45 0 chr3 209204668 209204735 -18319843 - L1MCa LINE L1 -4362 2064 1995 850 176 14 45 chr3 209204748 209204907 -18319671 + MER33 DNA MER1_type 107 259 -2326 1841 147 7 7 chr3 209204907 209205214 -18319364 + AluJb SINE Alu 1 307 -5 850 176 14 45 chr3 209205214 209205275 -18319303 + MER33 DNA MER1_type 259 320 -4 987 188 29 14 chr3 209206040 209206248 -18318330 + AluJo SINE Alu 1 211 -101 212 83 0 28 chr3 209206248 209206284 -18318294 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 1860 134 17 0 chr3 209206387 209206677 -18317901 - AluSx SINE Alu -17 295 1 222 118 0 0 chr3 209207409 209207443 -18317135 + (GGGA)n Simple_repeat Simple_repeat 3 36 0 1549 182 0 0 chr3 209207462 209207742 -18316836 - AluJo SINE Alu -22 290 11 329 286 123 29 chr3 209207952 209208123 -18316455 + MIR SINE MIR 67 253 -9 487 246 70 7 chr3 209208477 209208619 -18315959 - MIR SINE MIR 0 262 112 2201 107 0 3 chr3 209208628 209208937 -18315641 - AluSc SINE Alu -1 308 1 796 265 56 0 chr3 209209640 209209836 -18314742 + MER63A DNA MER1_type 1 207 -3 1958 143 0 6 chr3 209210074 209210388 -18314190 - AluSx SINE Alu 0 312 1 1010 135 129 0 chr3 209210396 209210566 -18314012 - AluJb SINE Alu -120 192 1 287 282 77 32 chr3 209211530 209211686 -18312892 - L1ME3A LINE L1 0 6170 6008 291 286 0 54 chr3 209211704 209211816 -18312762 - L2 LINE L2 -925 2389 2284 538 269 43 34 chr3 209212002 209212210 -18312368 + L1M4 LINE L1 2278 2487 -3659 188 250 60 36 chr3 209212210 209212294 -18312284 + L3 LINE CR1 1131 1216 -361 2230 88 0 7 chr3 209212538 209212845 -18311733 - AluY SINE Alu -6 305 1 481 277 108 26 chr3 209212937 209213132 -18311446 + MIR SINE MIR 11 221 -41 349 304 101 27 chr3 209215529 209215677 -18308901 + MIR3 SINE MIR 2 160 -48 451 171 263 59 chr3 209215683 209215835 -18308743 - MER5A DNA MER1_type -6 183 1 1251 132 0 5 chr3 209215847 209216044 -18308534 + AluSp SINE Alu 112 307 -6 205 233 0 23 chr3 209216047 209216090 -18308488 - MER5B DNA MER1_type -135 43 2 227 287 0 23 chr3 209216117 209216204 -18308374 + L1MC4 LINE L1 6619 6703 -1339 300 53 0 0 chr3 209216507 209216545 -18308033 + (TA)n Simple_repeat Simple_repeat 1 38 0 686 141 197 28 chr3 209216546 209216688 -18307890 - AluSg/x SINE Alu -10 300 135 2273 101 0 0 chr3 209217253 209217551 -18307027 - AluSg SINE Alu -12 298 1 254 269 129 11 chr3 209218558 209218651 -18305927 + MER91A DNA MER1_type 52 155 -41 2342 91 0 0 chr3 209218652 209218959 -18305619 - AluSg SINE Alu -3 307 1 711 128 28 0 chr3 209219362 209219471 -18305107 + AluSq/x SINE Alu 37 148 -164 1814 100 0 0 chr3 209219471 209219720 -18304858 + AluSc SINE Alu 55 303 -6 684 316 96 68 chr3 209220045 209220946 -18303632 + L2 LINE L2 2326 3259 -13 571 243 40 33 chr3 209221156 209221308 -18303270 - MIR SINE MIR 0 262 110 424 239 148 0 chr3 209221279 209221421 -18303157 + MIR3 SINE MIR 5 167 -41 * 549 231 107 42 chr3 209221483 209221699 -18302879 + Tigger8 DNA MER2_type 80 309 -357 1305 198 142 19 chr3 209221728 209222351 -18302227 + LTR50 LTR ERVL 1 788 -7 664 233 48 0 chr3 209222465 209222609 -18301969 - MIR SINE MIR -103 159 9 313 160 0 0 chr3 209222609 209222659 -18301919 - MER5A DNA MER1_type 0 189 140 2216 96 3 3 chr3 209222661 209222974 -18301604 - AluSq SINE Alu 0 313 1 240 156 156 0 chr3 209223188 209223252 -18301326 - HAL1 LINE L1 -128 2379 2306 1084 260 154 27 chr3 209223271 209223516 -18301062 - HAL1 LINE L1 -329 2178 1965 429 20 0 0 chr3 209223516 209223566 -18301012 + (TG)n Simple_repeat Simple_repeat 2 51 0 1084 260 154 27 chr3 209223566 209223951 -18300627 - HAL1 LINE L1 -542 1965 1468 2149 79 14 0 chr3 209224112 209224404 -18300174 - AluY SINE Alu -15 296 1 212 59 29 0 chr3 209224412 209224446 -18300132 + (TTTA)n Simple_repeat Simple_repeat 2 36 0 2212 91 0 0 chr3 209224449 209224736 -18299842 - AluSx SINE Alu -25 287 1 212 256 93 145 chr3 209225226 209225521 -18299057 + L2 LINE L2 2874 3142 -130 1566 172 17 23 chr3 209225521 209225823 -18298755 - AluJo SINE Alu -10 302 3 212 256 93 145 chr3 209225823 209225948 -18298630 + L2 LINE L2 3142 3272 0 1100 141 0 6 chr3 209225957 209226127 -18298451 - AluSg/x SINE Alu -10 300 132 2333 68 0 19 chr3 209226127 209226434 -18298144 - AluY SINE Alu -10 301 1 281 333 68 34 chr3 209228070 209228307 -18296271 + L2 LINE L2 2721 2965 -349 1729 178 30 67 chr3 209228477 209228881 -18295697 - MLT1B LTR MaLR -1 389 1 3371 235 41 67 chr3 209228881 209229176 -18295402 - MLT1B-int LTR MaLR 0 1580 1279 2367 70 10 0 chr3 209229176 209229477 -18295101 + AluY SINE Alu 1 304 -7 3371 235 41 67 chr3 209229477 209229788 -18294790 - MLT1B-int LTR MaLR -301 1279 961 2230 99 0 7 chr3 209229788 209230091 -18294487 + AluSx SINE Alu 1 301 -11 3371 235 41 67 chr3 209230091 209230775 -18293803 - MLT1B-int LTR MaLR -619 961 2 1228 217 29 24 chr3 209230776 209231107 -18293471 - MLT1B LTR MaLR 0 396 59 1206 152 203 8 chr3 209231112 209231368 -18293210 - AluSg1 SINE Alu -3 306 1 2242 100 0 0 chr3 209232552 209232852 -18291726 - AluSx SINE Alu -11 301 2 307 333 21 7 chr3 209233010 209233151 -18291427 - L1MC4a LINE L1 -1870 5938 5796 581 292 59 25 chr3 209233209 209233411 -18291167 + MIR SINE MIR 2 210 -52 234 0 0 0 chr3 209233583 209233609 -18290969 + (TG)n Simple_repeat Simple_repeat 2 27 0 2237 80 7 0 chr3 209233609 209233895 -18290683 - AluSg SINE Alu -22 288 1 2065 103 0 10 chr3 209234818 209235120 -18289458 + AluSx SINE Alu 1 299 -13 259 143 0 0 chr3 209235131 209235180 -18289398 + L1PB1 LINE L1 6103 6151 0 181 308 0 0 chr3 209235642 209235694 -18288884 + L2 LINE L2 3262 3313 0 1992 82 41 0 chr3 209235775 209236078 -18288500 + AluSc SINE Alu 1 314 0 1236 317 79 54 chr3 209236733 209237506 -18287072 - L2 LINE L2 -1 3312 2516 1933 130 0 34 chr3 209237506 209237829 -18286749 + AluSx SINE Alu 1 312 0 1236 317 79 54 chr3 209237829 209238117 -18286461 - L2 LINE L2 -797 2516 2237 332 322 0 0 chr3 209238139 209238226 -18286352 + HAL1b LINE L1 1244 1330 -18 497 214 62 99 chr3 209239177 209239336 -18285242 - HAL1 LINE L1 -679 1828 1676 2264 86 0 3 chr3 209239336 209239639 -18284939 - AluY SINE Alu -9 302 1 497 214 62 99 chr3 209239639 209239671 -18284907 - HAL1 LINE L1 -831 1676 1644 1690 128 24 24 chr3 209239672 209239969 -18284609 - AluJb SINE Alu -15 297 1 1456 235 60 63 chr3 209239990 209240023 -18284555 - HAL1 LINE L1 -1091 1416 1384 279 79 0 0 chr3 209240023 209240061 -18284517 + (TG)n Simple_repeat Simple_repeat 2 39 0 1456 235 60 63 chr3 209240061 209240555 -18284023 - HAL1 LINE L1 -1123 1384 889 820 161 8 0 chr3 209240555 209240685 -18283893 - FLAM_C SINE Alu -2 131 1 1456 235 60 63 chr3 209240685 209240761 -18283817 - HAL1 LINE L1 -1618 889 814 1388 92 0 5 chr3 209240761 209240945 -18283633 + AluSg/x SINE Alu 92 274 -36 263 258 140 11 chr3 209240970 209241063 -18283515 - MER46C DNA MER2_type -229 109 5 3070 53 0 15 chr3 209241296 209241692 -18282886 - L1PA8 LINE L1 0 6172 5783 246 189 19 0 chr3 209243150 209243203 -18281375 + L1MC/D LINE L1 5713 5766 -2042 363 221 0 0 chr3 209243407 209243475 -18281103 - MER46C DNA MER2_type -5 333 266 324 266 13 0 chr3 209243502 209243581 -18280997 - MER46C DNA MER2_type -130 208 129 2026 113 7 10 chr3 209243585 209243886 -18280692 + AluSx SINE Alu 1 300 -12 263 336 9 37 chr3 209243900 209244007 -18280571 + MIR SINE MIR 50 153 -109 632 229 93 93 chr3 209244098 209244408 -18280170 - LTR67 LTR ERVL -3 554 245 209 356 148 0 chr3 209244727 209244828 -18279750 + L2 LINE L2 3156 3271 -1 690 145 188 0 chr3 209245472 209245610 -18278968 - MSTA LTR MaLR -264 164 1 411 241 9 27 chr3 209245610 209245722 -18278856 - MLT-int LTR MaLR -1515 220 111 28 48 0 0 chr3 209245844 209245886 -18278692 + AT_rich Low_complexity Low_complexity 1 42 0 262 190 17 0 chr3 209245917 209245975 -18278603 + MLT1-int LTR MaLR 829 887 -484 2303 85 3 0 chr3 209246175 209246481 -18278097 + AluSq SINE Alu 1 307 -6 474 18 0 0 chr3 209247043 209247098 -18277480 + (CA)n Simple_repeat Simple_repeat 2 56 0 477 341 67 37 chr3 209247107 209247541 -18277037 + MLT1K LTR MaLR 140 586 -2 2059 189 93 9 chr3 209247805 209248265 -18276313 - LTR65 LTR ERV1 -167 502 4 385 174 128 0 chr3 209248279 209248365 -18276213 - LTR65 LTR ERV1 -570 99 3 194 225 0 0 chr3 209248397 209248437 -18276141 - L2 LINE L2 -2074 1240 1201 1855 152 0 22 chr3 209248472 209248787 -18275791 + AluJb SINE Alu 1 308 -4 2147 65 7 4 chr3 209248841 209249163 -18275415 + AluY SINE Alu 6 328 0 227 244 115 0 chr3 209249166 209249244 -18275334 + MIR SINE MIR 161 247 -15 27 49 0 0 chr3 209249679 209249720 -18274858 + AT_rich Low_complexity Low_complexity 1 41 0 1992 148 7 0 chr3 209250500 209250801 -18273777 - AluSx SINE Alu -12 300 1 2232 108 0 10 chr3 209251287 209251456 -18273122 - AluSq SINE Alu -11 302 136 2320 103 3 0 chr3 209251456 209251758 -18272820 - AluSg SINE Alu -7 303 1 2232 108 0 10 chr3 209251758 209251893 -18272685 - AluSq SINE Alu -177 136 1 521 54 0 14 chr3 209251987 209252061 -18272517 + (TCCA)n Simple_repeat Simple_repeat 4 76 0 189 261 189 33 chr3 209252064 209252217 -18272361 - L2 LINE L2 -13 3300 3124 418 225 11 124 chr3 209252290 209252468 -18272110 - L2 LINE L2 -182 3090 2933 189 333 101 16 chr3 209252612 209252801 -18271777 - L2 LINE L2 -557 2757 2553 339 65 0 0 chr3 209253960 209254006 -18270572 + (TG)n Simple_repeat Simple_repeat 2 47 0 373 262 119 8 chr3 209254947 209255073 -18269505 + MIR SINE MIR 47 186 -76 3349 77 9 0 chr3 209255075 209255506 -18269072 + L1PA12 LINE L1 5648 6082 -86 1142 184 85 11 chr3 209255653 209255765 -18268813 + AluSg SINE Alu 5 107 -193 1671 146 21 7 chr3 209255765 209256053 -18268525 + AluSg SINE Alu 1 292 -18 1142 184 85 11 chr3 209256053 209256212 -18268366 + AluSg SINE Alu 107 296 -4 27 49 0 0 chr3 209257098 209257139 -18267439 + AT_rich Low_complexity Low_complexity 1 41 0 456 311 52 28 chr3 209257574 209257655 -18266923 - MIR SINE MIR -15 247 169 2304 75 3 3 chr3 209257655 209257981 -18266597 - AluSc SINE Alu 0 326 1 456 311 52 28 chr3 209257981 209258110 -18266468 - MIR SINE MIR -93 169 31 2623 62 0 0 chr3 209258713 209259019 -18265559 - AluY SINE Alu -5 306 1 2466 68 0 19 chr3 209261146 209261453 -18263125 + AluY SINE Alu 1 301 -10 1168 138 0 6 chr3 209261453 209261620 -18262958 + AluSg/x SINE Alu 132 297 -13 186 233 0 0 chr3 209261632 209261675 -18262903 - L2 LINE L2 0 3313 3271 1681 172 17 23 chr3 209261757 209262059 -18262519 + AluJo SINE Alu 3 302 -10 2340 91 0 0 chr3 209262843 209263130 -18261448 + AluSx SINE Alu 1 287 -25 212 59 29 0 chr3 209263133 209263167 -18261411 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 2268 79 14 0 chr3 209263175 209263467 -18261111 + AluY SINE Alu 1 296 -15 1194 255 154 27 chr3 209263628 209264013 -18260565 + HAL1 LINE L1 1468 1803 -704 429 20 0 0 chr3 209264013 209264063 -18260515 + (CA)n Simple_repeat Simple_repeat 2 51 0 1194 255 154 27 chr3 209264063 209264308 -18260270 + HAL1 LINE L1 1803 2178 -329 246 156 156 0 chr3 209264327 209264391 -18260187 + HAL1 LINE L1 2306 2379 -128 1998 119 34 3 chr3 209264605 209264898 -18259680 + AluSx SINE Alu 1 302 -10 27 0 0 0 chr3 209266039 209266066 -18258512 + GC_rich Low_complexity Low_complexity 1 27 0 25 75 0 0 chr3 209266354 209266407 -18258171 + GC_rich Low_complexity Low_complexity 1 53 0 2128 84 0 61 chr3 209267562 209267872 -18256706 - AluSx SINE Alu -20 292 2 674 187 0 0 chr3 209268582 209268705 -18255873 + FLAM_A SINE Alu 14 136 -6 2388 79 3 0 chr3 209268833 209269125 -18255453 + AluSq SINE Alu 1 293 -20 2691 43 0 0 chr3 209269263 209269568 -18255010 + AluY SINE Alu 1 305 -6 2006 100 0 68 chr3 209269638 209269949 -18254629 + AluSg SINE Alu 1 290 -20 2336 99 0 6 chr3 209270502 209270814 -18253764 - AluSg SINE Alu 0 310 1 2274 64 60 0 chr3 209271127 209271409 -18253169 + AluSc SINE Alu 1 299 -10 234 0 0 0 chr3 209272517 209272543 -18252035 + (A)n Simple_repeat Simple_repeat 1 26 0 25 51 0 0 chr3 209272614 209272653 -18251925 + AT_rich Low_complexity Low_complexity 1 39 0 2400 84 3 0 chr3 209272864 209273163 -18251415 + AluSp SINE Alu 2 301 -12 1313 70 0 122 chr3 209273944 209274158 -18250420 - AluSc SINE Alu 0 309 122 29 90 0 0 chr3 209275520 209275598 -18248980 + AT_rich Low_complexity Low_complexity 1 78 0 2214 125 10 0 chr3 209275997 209276300 -18248278 + AluSx SINE Alu 1 306 -6 756 93 17 25 chr3 209276725 209276843 -18247735 - AluY SINE Alu -11 300 184 239 309 12 12 chr3 209277132 209277213 -18247365 + CT-rich Low_complexity Low_complexity 2 82 0 350 164 30 0 chr3 209277368 209277435 -18247143 + Alu SINE Alu 232 300 -1 2214 125 10 0 chr3 209277860 209278163 -18246415 - AluSx SINE Alu -6 306 1 29 90 0 0 chr3 209278562 209278640 -18245938 + AT_rich Low_complexity Low_complexity 1 78 0 1313 70 0 122 chr3 209280002 209280216 -18244362 + AluSc SINE Alu 122 309 0 2329 87 7 0 chr3 209280997 209281295 -18243283 - AluSp SINE Alu -12 301 2 25 51 0 0 chr3 209281506 209281545 -18243033 + AT_rich Low_complexity Low_complexity 1 39 0 234 0 0 0 chr3 209281616 209281642 -18242936 + (T)n Simple_repeat Simple_repeat 1 26 0 2274 64 60 0 chr3 209282750 209283032 -18241546 - AluSc SINE Alu -10 299 1 2047 123 0 17 chr3 209283345 209283647 -18240931 + AluSg SINE Alu 1 297 -13 27 0 0 0 chr3 209284788 209284815 -18239763 + GC_rich Low_complexity Low_complexity 1 27 0 25 75 0 0 chr3 209285103 209285156 -18239422 + GC_rich Low_complexity Low_complexity 1 53 0 2128 84 0 61 chr3 209286311 209286621 -18237957 - AluSx SINE Alu -20 292 2 674 187 0 0 chr3 209287331 209287454 -18237124 + FLAM_A SINE Alu 14 136 -6 2388 79 3 0 chr3 209287582 209287874 -18236704 + AluSq SINE Alu 1 293 -20 2407 76 7 3 chr3 209288012 209288314 -18236264 + AluSc SINE Alu 1 303 -6 2006 100 0 68 chr3 209288384 209288695 -18235883 + AluSg SINE Alu 1 290 -20 2246 102 13 7 chr3 209289262 209289566 -18235012 + AluSc SINE Alu 1 306 -3 1920 99 4 4 chr3 209289566 209289819 -18234759 + AluSc SINE Alu 14 266 -43 2075 128 3 16 chr3 209289844 209290156 -18234422 + AluSx SINE Alu 1 308 -4 250 179 36 18 chr3 209290187 209290243 -18234335 + L2 LINE L2 3247 3303 -10 2016 153 0 3 chr3 209290842 209291137 -18233441 + AluSx SINE Alu 1 294 -18 28 48 0 0 chr3 209291270 209291312 -18233266 + AT_rich Low_complexity Low_complexity 1 42 0 904 247 67 40 chr3 209291402 209291730 -18232848 - L1ME4a LINE L1 -223 5898 5562 1654 155 85 11 chr3 209291757 209292028 -18232550 + AluJo SINE Alu 3 293 -19 1942 138 31 0 chr3 209293796 209294087 -18230491 + AluJo SINE Alu 3 302 -10 232 173 39 0 chr3 209294258 209294310 -18230268 - L1ME4a LINE L1 0 6121 6068 656 106 0 0 chr3 209294557 209294661 -18229917 - L1MB2 LINE L1 0 6171 6068 2451 170 62 19 chr3 209295456 209295927 -18228651 - LTR4 LTR ERV1 0 596 106 507 209 0 0 chr3 209295940 209296031 -18228547 + LTR4 LTR ERV1 506 596 0 565 305 118 20 chr3 209296160 209296550 -18228028 + L2 LINE L2 1840 2267 -1047 223 233 0 33 chr3 209296557 209296647 -18227931 + T-rich Low_complexity Low_complexity 2 88 0 317 311 161 21 chr3 209296659 209296939 -18227639 - L1MC4 LINE L1 -230 7812 7494 296 262 65 56 chr3 209297055 209297162 -18227416 - L1MC4a LINE L1 -458 7350 7243 1737 182 3 10 chr3 209297466 209297757 -18226821 + AluJo SINE Alu 1 289 -23 2021 99 14 34 chr3 209297764 209298058 -18226520 + AluSc SINE Alu 1 288 -21 27 0 0 0 chr3 209298058 209298085 -18226493 + AT_rich Low_complexity Low_complexity 1 27 0 1812 147 63 0 chr3 209298159 209298445 -18226133 - AluJb SINE Alu -3 309 6 1454 6 24 0 chr3 209298899 209299063 -18225515 + BC200 scRNA scRNA 1 168 -32 324 259 52 59 chr3 209299677 209299812 -18224766 - MIR3 SINE MIR -45 163 30 2385 97 0 0 chr3 209300052 209300350 -18224228 + AluSx SINE Alu 1 298 -14 1113 230 52 115 chr3 209300377 209300931 -18223647 - L1MC4a LINE L1 -1871 5937 5424 1553 145 15 27 chr3 209300931 209301193 -18223385 - AluJo SINE Alu -19 293 35 1113 230 52 115 chr3 209301193 209301255 -18223323 - L1MC4a LINE L1 -2384 5424 5360 1977 120 27 24 chr3 209301372 209301664 -18222914 + AluSx SINE Alu 1 293 -19 241 243 28 84 chr3 209301713 209301820 -18222758 - MLT1K LTR MaLR -110 478 378 1732 152 7 14 chr3 209302243 209302520 -18222058 - AluJb SINE Alu -2 310 36 260 282 101 13 chr3 209302654 209302803 -18221775 - L1ME LINE L1 -382 5739 5578 2451 51 0 26 chr3 209302897 209303209 -18221369 + AluY SINE Alu 1 304 -7 837 172 12 37 chr3 209303219 209303382 -18221196 + FRAM SINE Alu 8 166 -10 26 30 0 0 chr3 209305522 209305555 -18219023 + AT_rich Low_complexity Low_complexity 1 33 0 2330 89 0 3 chr3 209305932 209306234 -18218344 + AluSc SINE Alu 1 301 -8 26 30 0 0 chr3 209307541 209307574 -18217004 + AT_rich Low_complexity Low_complexity 1 33 0 2371 85 0 3 chr3 209307590 209307897 -18216681 + AluSc SINE Alu 1 306 -3 1938 146 3 7 chr3 209308007 209308302 -18216276 - AluSg SINE Alu -16 294 1 1148 138 22 82 chr3 209308340 209308381 -18216197 - MER46A DNA MER2_type -2513 218 176 1859 169 3 3 chr3 209308381 209308683 -18215895 - AluJb SINE Alu -10 302 1 1148 138 22 82 chr3 209308683 209308873 -18215705 - MER46A DNA MER2_type -2555 176 1 1739 96 42 0 chr3 209309259 209309498 -18215080 + AluSc SINE Alu 1 249 -60 1544 118 49 86 chr3 209309504 209309808 -18214770 + MER1B DNA MER1_type 47 339 0 1725 190 14 0 chr3 209309844 209310134 -18214444 - AluJb SINE Alu -18 294 1 1994 110 38 3 chr3 209310748 209311038 -18213540 + AluSg SINE Alu 3 302 -8 238 293 107 64 chr3 209311040 209311180 -18213398 - MIR3 SINE MIR -21 187 42 247 267 27 0 chr3 209311245 209311320 -18213258 - MIR SINE MIR -59 203 127 1242 92 0 6 chr3 209311320 209311484 -18213094 + AluSq SINE Alu 131 293 -20 218 200 0 0 chr3 209311615 209311660 -18212918 + MIR SINE MIR 78 122 -140 1649 173 3 64 chr3 209312083 209312413 -18212165 + AluJo SINE Alu 1 310 -2 597 216 61 114 chr3 209312778 209313023 -18211555 + MER106A DNA MER1_type 5 236 0 25 0 0 0 chr3 209314384 209314409 -18210169 + AT_rich Low_complexity Low_complexity 1 25 0 2198 118 3 10 chr3 209314704 209314834 -18209744 + AluSx SINE Alu 1 130 -182 2271 70 3 3 chr3 209314834 209315175 -18209403 + AluSp SINE Alu 1 341 0 2198 118 3 10 chr3 209315175 209315356 -18209222 + AluSx SINE Alu 130 311 -1 403 306 150 20 chr3 209315865 209316159 -18208419 + L2 LINE L2 2069 2400 -914 2151 99 7 3 chr3 209316365 209316781 -18207797 - AluSq SINE Alu 0 417 1 836 163 0 22 chr3 209317773 209317908 -18206670 + AluJo SINE Alu 2 133 -169 1953 84 0 0 chr3 209318280 209318517 -18206061 - AluSx SINE Alu -75 237 1 2146 112 0 3 chr3 209319902 209320214 -18204364 - AluSq SINE Alu 0 311 1 2591 93 14 3 chr3 209320637 209320991 -18203587 - L1PA13 LINE L1 0 6163 5806 855 204 6 0 chr3 209322267 209322434 -18202144 + AluJo SINE Alu 136 303 -9 27 0 0 0 chr3 209323802 209323829 -18200749 + AT_rich Low_complexity Low_complexity 1 27 0 214 263 18 0 chr3 209324013 209324070 -18200508 + (TATG)n Simple_repeat Simple_repeat 2 59 0 1937 79 50 46 chr3 209325050 209325353 -18199225 - AluSg SINE Alu -6 304 1 1842 171 0 13 chr3 209326932 209327236 -18197342 - AluJo SINE Alu -12 300 1 207 0 0 0 chr3 209327510 209327533 -18197045 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 1805 181 152 38 chr3 209327587 209327754 -18196824 - LTR48B LTR ERV1 -59 585 438 2211 83 0 28 chr3 209327754 209328043 -18196535 - AluSg SINE Alu -15 295 15 1805 181 152 38 chr3 209328043 209328400 -18196178 - LTR48B LTR ERV1 -206 438 1 2528 122 37 8 chr3 209329045 209329399 -18195179 + THE1B LTR MaLR 1 364 0 2196 107 7 3 chr3 209329689 209329989 -18194589 - AluSp SINE Alu -10 303 3 189 0 0 0 chr3 209329991 209330012 -18194566 + (TTTC)n Simple_repeat Simple_repeat 3 23 0 2312 66 0 10 chr3 209330013 209330302 -18194276 - AluY SINE Alu -25 286 1 1144 175 9 19 chr3 209330304 209330526 -18194052 - L1MC/D LINE L1 -478 5706 5525 23 0 0 0 chr3 209330623 209330646 -18193932 + AT_rich Low_complexity Low_complexity 1 23 0 1412 164 17 4 chr3 209330702 209330933 -18193645 - MLT1A1 LTR MaLR 0 365 132 1854 164 3 10 chr3 209330933 209331225 -18193353 + AluJb SINE Alu 1 290 -22 2320 90 3 3 chr3 209331233 209331532 -18193046 + AluSp SINE Alu 1 299 -14 2189 107 0 35 chr3 209331536 209331846 -18192732 + AluSx SINE Alu 1 299 -13 674 116 0 2 chr3 209331867 209332126 -18192452 + AluSx SINE Alu 1 310 0 703 124 8 25 chr3 209332135 209332256 -18192322 - MLT1A1 LTR MaLR -246 119 1 2057 115 3 3 chr3 209332439 209332726 -18191852 - AluSg SINE Alu -21 289 3 1024 105 0 0 chr3 209333158 209333291 -18191287 + AluSq/x SINE Alu 3 135 -177 2602 45 0 6 chr3 209333291 209333604 -18190974 + AluY SINE Alu 1 311 0 734 169 0 17 chr3 209333616 209333734 -18190844 - FLAM_A SINE Alu -17 116 1 603 318 70 5 chr3 209333947 209334086 -18190492 + MIR SINE MIR 7 166 -96 2407 60 0 38 chr3 209334086 209334405 -18190173 + AluSc SINE Alu 1 307 -2 603 318 70 5 chr3 209334405 209334479 -18190099 + MIR SINE MIR 166 234 -28 324 238 48 48 chr3 209334497 209334516 -18190062 - Charlie8 DNA MER1_type -2220 197 179 2365 94 0 10 chr3 209334516 209334824 -18189754 + AluSx SINE Alu 1 305 -7 324 238 48 48 chr3 209334824 209334930 -18189648 - Charlie8 DNA MER1_type -2237 180 72 288 317 109 53 chr3 209334964 209335099 -18189479 + L2 LINE L2 2160 2286 -1028 2416 95 0 0 chr3 209335099 209335404 -18189174 + AluSx SINE Alu 1 305 -7 288 317 109 53 chr3 209335404 209335574 -18189004 + L2 LINE L2 2286 2483 -831 354 236 150 21 chr3 209335574 209335714 -18188864 + MER91A DNA MER1_type 1 158 -38 2194 89 31 7 chr3 209335866 209336158 -18188420 - AluSq SINE Alu -14 299 1 2056 118 24 3 chr3 209336280 209336577 -18188001 + AluSc SINE Alu 1 303 -6 270 303 61 61 chr3 209336622 209336754 -18187824 + MIR SINE MIR 20 151 -111 398 185 193 17 chr3 209337021 209337140 -18187438 + L1MC5 LINE L1 7766 7905 -56 2133 100 4 0 chr3 209337275 209337554 -18187024 - AluSp SINE Alu -13 300 21 1031 249 80 47 chr3 209337754 209338119 -18186459 + MLT1J LTR MaLR 1 377 -134 1855 139 20 14 chr3 209338449 209338584 -18185994 + AluSx SINE Alu 2 135 -177 2143 119 0 7 chr3 209338584 209338878 -18185700 + AluSg SINE Alu 1 292 -18 1855 139 20 14 chr3 209338878 209339037 -18185541 + AluSx SINE Alu 135 298 -14 1086 169 49 74 chr3 209339290 209339533 -18185045 + AluJo SINE Alu 1 237 -75 197 167 0 0 chr3 209339954 209339984 -18184594 - L2 LINE L2 -19 3253 3224 235 289 62 31 chr3 209340039 209340136 -18184442 - MIR SINE MIR -161 101 2 2243 119 3 0 chr3 209340304 209340599 -18183979 - AluSx SINE Alu -16 296 1 208 277 36 36 chr3 209341261 209341344 -18183234 - MER5A DNA MER1_type -29 160 78 2199 90 14 3 chr3 209341440 209341730 -18182848 - AluSq SINE Alu -13 300 8 2057 125 13 3 chr3 209341872 209342175 -18182403 - AluSq SINE Alu -7 306 1 1948 125 20 23 chr3 209342179 209342482 -18182096 - AluSx SINE Alu -10 302 1 508 289 122 10 chr3 209342600 209342797 -18181781 + MIR SINE MIR 28 246 -16 1880 175 48 6 chr3 209342807 209343139 -18181439 + MER7A DNA MER2_type 2 345 -1 2335 89 3 13 chr3 209343180 209343495 -18181083 - AluSx SINE Alu 0 312 1 2238 96 13 0 chr3 209344878 209345179 -18179399 + AluSp SINE Alu 1 305 -8 201 324 122 14 chr3 209345348 209345422 -18179156 + L2 LINE L2 3140 3221 -51 2294 88 7 7 chr3 209345643 209345951 -18178627 + AluSp SINE Alu 1 308 -5 508 163 0 0 chr3 209346388 209346468 -18178110 - Tigger5 DNA MER2_type -2 2321 2242 379 230 0 0 chr3 209346458 209346532 -18178046 + Tigger5 DNA MER2_type 2242 2315 -8 * 423 218 0 13 chr3 209346537 209346615 -18177963 - Tigger5 DNA MER2_type -2246 77 1 32 0 0 0 chr3 209346675 209346707 -18177871 + AT_rich Low_complexity Low_complexity 1 32 0 533 197 25 33 chr3 209347114 209347236 -18177342 + AluSq/x SINE Alu 6 126 -186 512 277 129 50 chr3 209347779 209347896 -18176682 + MARNA DNA Mariner 22 128 -458 2114 116 3 0 chr3 209347896 209348189 -18176389 - AluSx SINE Alu -18 294 1 512 277 129 50 chr3 209348189 209348450 -18176128 + MARNA DNA Mariner 128 430 -156 2089 101 32 4 chr3 209348685 209348963 -18175615 + AluSg SINE Alu 1 286 -24 22 35 0 0 chr3 209348963 209348992 -18175586 + AT_rich Low_complexity Low_complexity 1 29 0 380 216 34 11 chr3 209349943 209350031 -18174547 + MER5A DNA MER1_type 21 110 -79 2479 63 26 0 chr3 209350221 209350523 -18174055 + AluSp SINE Alu 3 312 -1 2080 116 3 7 chr3 209350852 209351144 -18173434 + AluSq SINE Alu 5 295 -18 2001 132 3 3 chr3 209352513 209352800 -18171778 - AluSx SINE Alu -25 287 1 2338 90 3 0 chr3 209353167 209353468 -18171110 + AluSx SINE Alu 1 302 -10 2163 91 30 14 chr3 209353653 209353950 -18170628 + AluSg SINE Alu 2 303 -7 1119 214 135 51 chr3 209354175 209354443 -18170135 + L1ME2 LINE L1 5740 5984 -180 2279 150 17 0 chr3 209354443 209354797 -18169781 - MER46B DNA MER2_type 0 236 2 2081 80 4 0 chr3 209354800 209355062 -18169516 - AluSp SINE Alu -18 295 33 1119 214 135 51 chr3 209355062 209355181 -18169397 + L1ME2 LINE L1 5985 6164 0 335 328 159 29 chr3 209355199 209355525 -18169053 + L2 LINE L2 2712 3087 -226 2242 85 10 3 chr3 209355576 209355871 -18168707 - AluY SINE Alu -14 297 1 312 228 210 50 chr3 209356008 209356227 -18168351 + L1M4 LINE L1 2276 2529 -3617 1884 157 0 6 chr3 209356279 209356591 -18167987 + AluJo SINE Alu 1 310 -2 2164 130 3 0 chr3 209356700 209356993 -18167585 + AluSx SINE Alu 1 294 -18 270 257 76 28 chr3 209357109 209357253 -18167325 + L1M4 LINE L1 2854 3004 -3142 1715 117 129 4 chr3 209357463 209357628 -18166950 - AluSx SINE Alu -15 297 154 216 0 0 0 chr3 209357628 209357652 -18166926 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 1715 117 129 4 chr3 209357652 209357750 -18166828 - AluSx SINE Alu -158 154 1 2150 103 17 0 chr3 209358783 209359074 -18165504 - AluSx SINE Alu -16 296 1 2203 104 0 7 chr3 209359169 209359466 -18165112 - AluSx SINE Alu -17 295 1 1881 141 0 30 chr3 209359933 209360230 -18164348 + AluJo SINE Alu 1 288 -24 2187 74 10 23 chr3 209360244 209360543 -18164035 + AluY SINE Alu 1 295 -16 219 186 0 0 chr3 209360546 209360589 -18163989 + (CATATA)n Simple_repeat Simple_repeat 2 44 0 1214 193 33 8 chr3 209360591 209360834 -18163744 - L1MB7 LINE L1 -49 6135 5887 1225 60 0 0 chr3 209360836 209360985 -18163593 - AluSg/x SINE Alu -8 304 156 268 159 0 0 chr3 209360985 209361029 -18163549 + Alu SINE Alu 256 299 -3 332 253 212 6 chr3 209361463 209361633 -18162945 + L1MC/D LINE L1 5258 5462 -2346 1288 272 186 33 chr3 209361756 209362066 -18162512 + L2 LINE L2 1896 2157 -1157 795 107 38 30 chr3 209362066 209362197 -18162381 - FLAM_C SINE Alu -1 132 1 1288 272 186 33 chr3 209362197 209362666 -18161912 + L2 LINE L2 2157 2794 -520 24 0 0 0 chr3 209363659 209363683 -18160895 + GC_rich Low_complexity Low_complexity 1 24 0 31 44 0 0 chr3 209363823 209363868 -18160710 + GC_rich Low_complexity Low_complexity 1 45 0 216 0 0 0 chr3 209363883 209363907 -18160671 + (CGGGG)n Simple_repeat Simple_repeat 5 28 0 193 255 0 0 chr3 209364100 209364147 -18160431 - L2 LINE L2 -25 3247 3201 329 174 43 14 chr3 209364169 209364238 -18160340 - MIR SINE MIR -118 144 74 243 310 89 13 chr3 209364243 209364401 -18160177 + L2 LINE L2 2507 2676 -638 2157 68 61 17 chr3 209364536 209364829 -18159749 - AluSx SINE Alu -6 306 1 2412 87 0 0 chr3 209365061 209365359 -18159219 - AluY SINE Alu -13 298 1 606 246 134 58 chr3 209365964 209366277 -18158301 + L2 LINE L2 2931 3267 -46 4907 165 21 47 chr3 209366404 209367528 -18157050 + L1MB3 LINE L1 4699 5792 -391 1526 174 40 20 chr3 209367528 209367663 -18156915 + AluJb SINE Alu 1 132 -180 2406 52 0 24 chr3 209367663 209367990 -18156588 + AluY SINE Alu 1 320 0 1526 174 40 20 chr3 209367990 209368152 -18156426 + AluJb SINE Alu 132 305 -7 4907 165 21 47 chr3 209368152 209368534 -18156044 + L1MB3 LINE L1 5792 6182 -1 2333 69 0 3 chr3 209368544 209368833 -18155745 + AluY SINE Alu 1 288 -23 186 133 0 0 chr3 209368851 209368881 -18155697 + (TA)n Simple_repeat Simple_repeat 2 31 0 1661 200 13 7 chr3 209368888 209369198 -18155380 + AluJo SINE Alu 1 312 0 2162 80 10 61 chr3 209369216 209369529 -18155049 + AluSx SINE Alu 1 297 -15 246 143 14 43 chr3 209369529 209369599 -18154979 + GA-rich Low_complexity Low_complexity 2 69 0 521 183 58 10 chr3 209369618 209369722 -18154856 + MSTA LTR MaLR 320 428 0 1519 102 0 5 chr3 209369808 209370013 -18154565 + AluSg/x SINE Alu 102 305 -7 482 264 61 10 chr3 209370325 209370522 -18154056 + L1ME4a LINE L1 5628 5834 -287 657 270 198 31 chr3 209371009 209371424 -18153154 + L3 LINE CR1 834 1317 -260 1728 178 30 3 chr3 209371433 209371737 -18152841 + AluJb SINE Alu 1 312 0 1313 178 0 9 chr3 209371737 209371967 -18152611 + AluJb SINE Alu 85 312 0 201 262 71 36 chr3 209372005 209372089 -18152489 + L3 LINE CR1 1404 1490 -87 2161 128 3 3 chr3 209372636 209372942 -18151636 + AluSx SINE Alu 1 306 -6 2432 86 0 13 chr3 209373370 209373684 -18150894 + AluSx SINE Alu 1 310 -2 1745 164 10 23 chr3 209374141 209374445 -18150133 + AluJb SINE Alu 1 300 -12 12014 114 22 21 chr3 209374619 209375544 -18149034 - Tigger1 DNA MER2_type 0 2418 1495 1840 155 3 16 chr3 209375544 209375860 -18148718 - AluJo SINE Alu 0 312 1 12014 114 22 21 chr3 209375860 209375992 -18148586 - Tigger1 DNA MER2_type -923 1495 1365 2255 102 3 0 chr3 209375992 209376287 -18148291 - AluSx SINE Alu -16 296 1 12014 114 22 21 chr3 209376287 209376549 -18148029 - Tigger1 DNA MER2_type -1053 1365 1105 2035 159 0 0 chr3 209376549 209376858 -18147720 + AluSx SINE Alu 1 309 -3 12014 114 22 21 chr3 209376858 209377369 -18147209 - Tigger1 DNA MER2_type -1313 1105 585 10465 21 9 0 chr3 209377369 209378642 -18145936 - L1P1 LINE L1 -699 5456 4176 6912 18 3 0 chr3 209378642 209379384 -18145194 + L1PA2 LINE L1 5410 6155 0 3352 162 35 5 chr3 209379394 209379974 -18144604 - Tigger1 DNA MER2_type -1821 597 1 204 333 9 27 chr3 209380167 209380278 -18144300 - MIR SINE MIR -98 164 56 2951 133 28 0 chr3 209380484 209380906 -18143672 + Tigger2a DNA MER2_type 1 434 0 203 276 79 26 chr3 209381279 209381355 -18143223 - MIR3 SINE MIR -9 199 120 236 226 85 38 chr3 209381706 209381812 -18142766 + L1MC5 LINE L1 7837 7947 -14 925 148 40 40 chr3 209381920 209382096 -18142482 + AluSg/x SINE Alu 120 295 -15 325 308 242 5 chr3 209383060 209383271 -18141307 - L3 LINE CR1 -130 1447 1187 702 206 171 20 chr3 209383308 209383507 -18141071 - MIR SINE MIR -24 238 10 508 117 13 0 chr3 209383635 209383712 -18140866 + Charlie5 DNA MER1_type 2508 2585 -27 796 317 101 11 chr3 209384255 209384611 -18139967 + L3 LINE CR1 1027 1414 -163 1554 164 119 7 chr3 209384658 209384927 -18139651 + AluJo SINE Alu 1 299 -3 2351 78 7 3 chr3 209384929 209385236 -18139342 + AluY SINE Alu 1 308 -3 272 324 29 37 chr3 209385242 209385301 -18139277 - L2 LINE L2 -9 3263 3205 2035 119 0 14 chr3 209385301 209385618 -18138960 - AluSg SINE Alu 0 313 1 272 324 29 37 chr3 209385618 209385693 -18138885 - L2 LINE L2 -67 3205 3129 2324 88 3 0 chr3 209386470 209386767 -18137811 - AluSc SINE Alu -11 298 1 516 246 84 11 chr3 209386768 209386947 -18137631 + L2 LINE L2 858 1049 -2265 818 317 113 19 chr3 209386957 209387380 -18137198 - L2 LINE L2 -2564 750 288 2058 141 20 0 chr3 209387422 209387728 -18136850 + AluSx SINE Alu 1 312 0 2204 80 0 60 chr3 209387797 209388111 -18136467 + AluSq SINE Alu 1 295 -18 2462 61 0 0 chr3 209388501 209388797 -18135781 - AluY SINE Alu -15 296 1 690 164 9 35 chr3 209389291 209389407 -18135171 + FLAM_C SINE Alu 2 114 -29 868 202 0 29 chr3 209389549 209389722 -18134856 + FRAM SINE Alu 1 161 -15 27 0 0 0 chr3 209389731 209389758 -18134820 + AT_rich Low_complexity Low_complexity 1 27 0 246 251 73 34 chr3 209390431 209390610 -18133968 - L1 LINE L1 -2750 3396 3211 1911 153 4 0 chr3 209390686 209390967 -18133611 + AluSq SINE Alu 1 282 -31 204 97 0 0 chr3 209390971 209391002 -18133576 + (CAAAA)n Simple_repeat Simple_repeat 2 32 0 2770 118 0 0 chr3 209392021 209392384 -18132194 + THE1B LTR MaLR 2 364 0 207 0 0 0 chr3 209392722 209392745 -18131833 + (A)n Simple_repeat Simple_repeat 1 23 0 2236 106 7 3 chr3 209392745 209393046 -18131532 + AluSp SINE Alu 1 302 -11 257 384 75 7 chr3 209393047 209393193 -18131385 + MIR3 SINE MIR 42 197 -11 209 234 85 0 chr3 209393757 209393804 -18130774 + L2 LINE L2 3222 3272 0 2154 108 7 0 chr3 209393869 209394155 -18130423 - AluSx SINE Alu -24 288 1 249 249 64 46 chr3 209394191 209394364 -18130214 + L1ME4a LINE L1 5946 6121 0 2283 101 0 3 chr3 209394835 209395132 -18129446 + AluSg SINE Alu 1 296 -14 193 357 93 7 chr3 209395134 209395199 -18129379 + MIR SINE MIR 47 105 -157 2474 78 0 3 chr3 209395199 209395508 -18129070 + AluY SINE Alu 2 309 -2 193 357 93 7 chr3 209395508 209395582 -18128996 + MIR SINE MIR 105 198 -64 923 203 99 63 chr3 209396749 209397114 -18127464 + MLT1C LTR MaLR 77 466 -1 545 232 33 71 chr3 209397556 209397792 -18126786 + L1MC5 LINE L1 7262 7491 -551 242 276 134 16 chr3 209397802 209397929 -18126649 + L1MC4 LINE L1 7490 7631 -411 594 110 42 23 chr3 209397932 209398126 -18126452 + FAM SINE Alu 22 184 -1 184 315 19 0 chr3 209398273 209398327 -18126251 + L2 LINE L2 3187 3241 -31 2005 92 95 3 chr3 209398350 209398633 -18125945 + AluSp SINE Alu 1 309 -4 2228 107 13 7 chr3 209398792 209399101 -18125477 + AluSx SINE Alu 1 311 -1 273 221 140 22 chr3 209399331 209399467 -18125111 + L1MC/D LINE L1 5327 5478 -2330 1592 113 18 0 chr3 209399578 209399802 -18124776 - L1MA3 LINE L1 0 6305 6078 23 0 0 0 chr3 209399903 209399926 -18124652 + AT_rich Low_complexity Low_complexity 1 23 0 1403 208 74 18 chr3 209400223 209400559 -18124019 + L1MC4 LINE L1 7317 7671 -371 1945 123 37 0 chr3 209400594 209400894 -18123684 + AluSx SINE Alu 1 311 -1 2242 60 0 0 chr3 209401529 209401839 -18122739 + AluY SINE Alu 2 311 0 200 324 49 39 chr3 209401904 209402006 -18122572 + MIR3 SINE MIR 65 167 -41 24 0 0 0 chr3 209402656 209402680 -18121898 + AT_rich Low_complexity Low_complexity 1 24 0 22 35 0 0 chr3 209402743 209402772 -18121806 + AT_rich Low_complexity Low_complexity 1 29 0 2257 67 0 10 chr3 209403291 209403591 -18120987 + AluY SINE Alu 1 297 -14 280 132 147 15 chr3 209403615 209403683 -18120895 - MER3 DNA MER1_type -5 204 128 2000 115 3 0 chr3 209403686 209403972 -18120606 + AluSg SINE Alu 1 287 -23 366 258 32 0 chr3 209403974 209404067 -18120511 - MER3 DNA MER1_type -112 97 2 1109 169 25 72 chr3 209404137 209404207 -18120371 - MER33 DNA MER1_type -2261 324 252 189 0 0 0 chr3 209404207 209404228 -18120350 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1959 122 0 0 chr3 209404228 209404506 -18120072 - AluSg SINE Alu -32 278 1 1109 169 25 72 chr3 209404506 209404712 -18119866 - MER33 DNA MER1_type -2331 254 60 2076 106 7 0 chr3 209404731 209405024 -18119554 + AluSq SINE Alu 4 298 -15 256 236 0 0 chr3 209405029 209405084 -18119494 - MER33 DNA MER1_type -253 71 17 180 289 184 26 chr3 209405102 209405216 -18119362 - MIR SINE MIR -119 143 12 1921 116 7 7 chr3 209405278 209405612 -18118966 + AluSx SINE Alu 1 334 0 2219 109 0 0 chr3 209405671 209405974 -18118604 + AluSg SINE Alu 1 303 -7 2317 50 10 13 chr3 209406300 209406600 -18117978 - AluY SINE Alu -12 299 1 2380 66 0 10 chr3 209407809 209408113 -18116465 + AluY SINE Alu 1 301 -10 1801 142 14 10 chr3 209408154 209408442 -18116136 + AluSx SINE Alu 1 289 -23 316 65 22 22 chr3 209408619 209408665 -18115913 - Alu SINE Alu -12 290 245 21 57 0 0 chr3 209408886 209408921 -18115657 + GC_rich Low_complexity Low_complexity 1 35 0 2102 88 3 3 chr3 209410307 209410623 -18113955 - AluSp SINE Alu 0 316 1 437 298 130 12 chr3 209410998 209411191 -18113387 + MIR SINE MIR 36 252 -10 180 111 0 0 chr3 209411501 209411528 -18113050 + (T)n Simple_repeat Simple_repeat 1 27 0 201 284 138 0 chr3 209412102 209412211 -18112367 + MIR3 SINE MIR 78 201 -7 180 220 0 20 chr3 209412455 209412505 -18112073 - L2 LINE L2 -4 3309 3261 * 377 274 162 34 chr3 209412472 209412651 -18111927 - MIR SINE MIR -14 248 47 2536 52 0 0 chr3 209412759 209413069 -18111509 - AluY SINE Alu -1 310 1 1095 249 178 14 chr3 209413173 209413527 -18111051 - L1MC/D LINE L1 -2011 5797 5386 818 157 60 6 chr3 209413692 209413858 -18110720 + MER58 DNA MER1_type 83 257 -84 2051 85 14 17 chr3 209413859 209414152 -18110426 + AluSq SINE Alu 1 292 -21 557 215 74 20 chr3 209414406 209414555 -18110023 + MIR SINE MIR 87 243 -19 2511 138 54 0 chr3 209414555 209414961 -18109617 - MSTA LTR MaLR 0 428 1 2447 59 0 0 chr3 209415022 209415328 -18109250 + AluY SINE Alu 1 306 -5 402 204 11 23 chr3 209416176 209416264 -18108314 - Tigger3(Golem) DNA MER2_type -2942 87 1 2448 168 88 39 chr3 209416268 209416781 -18107797 + MLT2B3 LTR ERVL 1 538 -16 227 244 0 0 chr3 209416780 209416821 -18107757 - Tigger3(Golem) DNA MER2_type -2988 41 1 * 419 213 0 0 chr3 209416825 209416905 -18107673 + MLT2B3 LTR ERVL 1 80 -474 336 252 81 16 chr3 209418479 209418602 -18105976 + MIR SINE MIR 60 190 -72 289 293 49 0 chr3 209418665 209418747 -18105831 - L2 LINE L2 -30 3283 3198 319 304 18 12 chr3 209418920 209419088 -18105490 + C-rich Low_complexity Low_complexity 4 172 0 23 100 0 0 chr3 209419088 209419148 -18105430 + GC_rich Low_complexity Low_complexity 1 60 0 2302 86 0 3 chr3 209419304 209419606 -18104972 + AluSx SINE Alu 1 301 -11 309 288 55 19 chr3 209419608 209419766 -18104812 - MIR SINE MIR -61 147 3 4559 169 16 46 chr3 209419951 209420935 -18103643 + LTR5 LTR ERVK 1 955 -14 784 268 17 13 chr3 209421046 209421277 -18103301 - L1ME3 LINE L1 -8 6154 5923 1681 158 46 0 chr3 209421374 209421553 -18103025 - AluJo SINE Alu 0 312 114 207 0 0 0 chr3 209421553 209421576 -18103002 + (TTA)n Simple_repeat Simple_repeat 2 24 0 1681 158 46 0 chr3 209421576 209421681 -18102897 - AluJo SINE Alu -198 114 15 187 346 58 19 chr3 209423019 209423123 -18101455 - MIR SINE MIR -65 143 36 182 184 197 26 chr3 209423209 209423285 -18101293 - L2 LINE L2 -237 3035 2947 1961 129 3 17 chr3 209424088 209424390 -18100188 + AluSx SINE Alu 3 300 -12 1824 178 0 6 chr3 209425720 209426034 -18098544 - AluJo SINE Alu 0 312 1 2093 102 0 34 chr3 209426330 209426654 -18097924 + AluSq SINE Alu 1 313 0 326 293 86 14 chr3 209427089 209427229 -18097349 + L2 LINE L2 3107 3256 -16 2952 52 8 0 chr3 209427230 209427594 -18096984 + L1PA8 LINE L1 5806 6172 0 453 307 124 14 chr3 209427902 209428120 -18096458 + MIR SINE MIR 11 252 -10 243 146 21 0 chr3 209428262 209428310 -18096268 - L1ME4a LINE L1 -111 6010 5962 195 69 0 0 chr3 209428465 209428494 -18096084 + (TTTA)n Simple_repeat Simple_repeat 4 32 0 2098 116 3 0 chr3 209428511 209428803 -18095775 + AluSp SINE Alu 3 295 -18 387 193 35 18 chr3 209428842 209428956 -18095622 - L1MC5 LINE L1 -212 7749 7634 3859 186 23 60 chr3 209429372 209430364 -18094214 + LTR5 LTR ERVK 1 955 -14 2094 89 7 0 chr3 209430398 209430707 -18093871 - AluSp SINE Alu 0 311 1 23 33 0 0 chr3 209431370 209431400 -18093178 + AT_rich Low_complexity Low_complexity 1 30 0 830 264 130 11 chr3 209431506 209431790 -18092788 + MLT1I LTR MaLR 77 394 -15 298 228 88 22 chr3 209431804 209431940 -18092638 - L1ME4a LINE L1 -103 6018 5874 * 1524 189 51 37 chr3 209431934 209432363 -18092215 - L1MC5 LINE L1 -212 7749 7315 420 230 75 69 chr3 209432591 209432758 -18091820 - L1ME4a LINE L1 -323 5798 5673 2000 87 0 18 chr3 209433565 209433893 -18090685 + AluSc SINE Alu 1 323 0 480 315 130 51 chr3 209433979 209434422 -18090156 + L2 LINE L2 2569 3069 -203 1877 158 0 0 chr3 209434422 209434753 -18089825 - AluJb SINE Alu 0 331 1 480 315 130 51 chr3 209434753 209434975 -18089603 + L2 LINE L2 3069 3272 0 2021 247 40 10 chr3 209435347 209435951 -18088627 - L1M4 LINE L1 -2581 3565 2944 2459 92 32 38 chr3 209436228 209436599 -18087979 + L1PA15 LINE L1 5792 6160 -5 734 262 65 26 chr3 209436877 209437106 -18087472 + MIR SINE MIR 13 250 -12 2105 101 3 0 chr3 209437490 209437801 -18086777 - AluSp SINE Alu 0 312 1 1783 217 92 50 chr3 209438407 209438927 -18085651 - MLT1F LTR MaLR 0 542 1 189 107 0 0 chr3 209438956 209438984 -18085594 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 2046 101 0 39 chr3 209438984 209439291 -18085287 - AluSq SINE Alu -18 295 1 316 294 64 0 chr3 209439292 209439401 -18085177 - L2 LINE L2 0 3313 3198 197 309 161 12 chr3 209440765 209440846 -18083732 - MIR SINE MIR -150 112 20 837 258 70 16 chr3 209441198 209441442 -18083136 - MIR SINE MIR 0 262 6 2192 101 0 13 chr3 209441926 209442242 -18082336 - AluSx SINE Alu 0 312 1 241 231 103 26 chr3 209442327 209442405 -18082173 - L2 LINE L2 -20 3252 3169 379 279 189 9 chr3 209442506 209442617 -18081961 + L2 LINE L2 3136 3266 -6 388 250 130 71 chr3 209442653 209442837 -18081741 - MIR SINE MIR -56 206 12 2243 104 0 0 chr3 209443040 209443348 -18081230 - AluSg SINE Alu -2 308 1 570 194 139 90 chr3 209443465 209443855 -18080723 - MLT1J2 LTR MaLR -8 442 1 2107 124 0 0 chr3 209443871 209444170 -18080408 - AluSx SINE Alu -11 301 3 305 140 35 0 chr3 209444171 209444228 -18080350 - AluSq/x SINE Alu -167 136 78 1241 156 0 28 chr3 209444228 209444446 -18080132 - AluSx SINE Alu -100 212 1 417 293 68 7 chr3 209444760 209445003 -18079575 - L1MC/D LINE L1 -519 5602 5443 570 306 236 21 chr3 209445006 209445604 -18078974 - L1MC/D LINE L1 -762 5384 4624 286 246 111 58 chr3 209445622 209445829 -18078749 - L1MC/D LINE L1 -1557 4589 4372 277 184 20 0 chr3 209448201 209448250 -18076328 + L2 LINE L2 3262 3311 -2 416 315 7 13 chr3 209449689 209449838 -18074740 - MIR SINE MIR -107 155 8 2183 113 0 10 chr3 209449892 209450202 -18074376 + AluSq SINE Alu 2 308 -5 651 127 0 17 chr3 209450528 209450646 -18073932 + AluY SINE Alu 194 309 -2 2146 95 35 0 chr3 209450935 209451219 -18073359 - AluSg SINE Alu -16 294 1 23 33 0 0 chr3 209454151 209454181 -18070397 + AT_rich Low_complexity Low_complexity 1 30 0 393 250 125 94 chr3 209455054 209455342 -18069236 - L1MEd LINE L1 -5711 408 112 213 216 0 0 chr3 209455798 209455835 -18068743 + (TG)n Simple_repeat Simple_repeat 1 37 0 3251 159 67 18 chr3 209455845 209456460 -18068118 - MER67B LTR ERV1 -4 657 13 343 137 50 43 chr3 209456693 209456825 -18067753 + MER112 DNA MER1_type 1 232 -28 2705 94 8 0 chr3 209456919 209457280 -18067298 - THE1B LTR MaLR 0 364 1 2005 137 0 34 chr3 209457450 209457772 -18066806 - AluSx SINE Alu -1 311 1 889 260 128 6 chr3 209458075 209458441 -18066137 - L2 LINE L2 -8 3305 2895 1986 137 7 10 chr3 209458445 209458745 -18065833 + AluSx SINE Alu 1 299 -13 2567 57 0 22 chr3 209459441 209459759 -18064819 + AluY SINE Alu 1 311 0 341 320 39 7 chr3 209459923 209460076 -18064502 + MIR SINE MIR 99 256 -6 286 336 47 0 chr3 209460087 209460194 -18064384 + L2 LINE L2 3145 3256 -16 2455 87 3 0 chr3 209460457 209460769 -18063809 + AluSq SINE Alu 1 313 0 207 318 103 28 chr3 209460824 209460931 -18063647 - MIR SINE MIR -38 224 110 2340 88 0 3 chr3 209461272 209461568 -18063010 - AluSc SINE Alu -14 295 1 721 257 101 13 chr3 209461857 209462094 -18062484 - HsTC2 DNA Tc2 -1261 637 380 * 943 188 148 0 chr3 209462090 209462292 -18062286 + MLT1F1 LTR MaLR 336 567 0 238 250 38 25 chr3 209463296 209463376 -18061202 + MER112 DNA MER1_type 60 140 -120 648 221 45 44 chr3 209464041 209464266 -18060312 + MIR SINE MIR 19 249 -13 2217 119 10 10 chr3 209464276 209464588 -18059990 + AluSx SINE Alu 1 312 0 1747 171 0 4 chr3 209465494 209465763 -18058815 + AluJb SINE Alu 1 268 -44 434 157 12 0 chr3 209465787 209465870 -18058708 + GA-rich Low_complexity Low_complexity 4 87 0 586 168 80 0 chr3 209465874 209465999 -18058579 + L1MA4 LINE L1 6165 6299 -1 2217 110 0 7 chr3 209466930 209467240 -18057338 - AluSq SINE Alu -5 308 1 447 289 54 27 chr3 209467612 209467761 -18056817 + L2 LINE L2 2692 2844 -470 232 188 21 0 chr3 209467763 209467811 -18056767 + CT-rich Low_complexity Low_complexity 3 51 0 326 167 181 0 chr3 209467891 209467963 -18056615 + MER58 DNA MER1_type 1 85 -256 1674 106 0 0 chr3 209467969 209468211 -18056367 - AluSx SINE Alu 0 305 64 2210 115 14 0 chr3 209468336 209468631 -18055947 + AluSq SINE Alu 1 299 -14 288 261 130 11 chr3 209468747 209468839 -18055739 + L2 LINE L2 3202 3304 -9 571 316 56 13 chr3 209469126 209469357 -18055221 - MIR SINE MIR -2 260 20 371 290 23 85 chr3 209470352 209470528 -18054050 + LTR67 LTR ERVL 301 465 -92 2397 90 3 0 chr3 209470576 209470886 -18053692 + AluSx SINE Alu 1 311 -1 1802 134 12 58 chr3 209470957 209471055 -18053523 - L1MB3 LINE L1 -42 6141 6040 1798 154 0 46 chr3 209471055 209471237 -18053341 - AluJo SINE Alu -2 310 148 1824 97 122 14 chr3 209471237 209471515 -18053063 - AluSg1 SINE Alu -1 308 1 1798 154 0 46 chr3 209471515 209471657 -18052921 - AluJo SINE Alu -164 148 1 1802 134 12 58 chr3 209471657 209471901 -18052677 - L1MB3 LINE L1 -143 6040 5815 7682 106 7 8 chr3 209471904 209473393 -18051185 + L1MA1 LINE L1 4817 6302 0 838 127 52 0 chr3 209473405 209473539 -18051039 - L1MB3 LINE L1 -352 5831 5691 271 238 25 25 chr3 209473579 209473659 -18050919 + LTR67 LTR ERVL 471 550 -7 916 57 0 0 chr3 209473727 209473832 -18050746 + AluSc SINE Alu 23 127 -182 2444 77 0 10 chr3 209473832 209474144 -18050434 + AluY SINE Alu 1 309 -2 1495 92 0 0 chr3 209474313 209474520 -18050058 - AluSg/x SINE Alu 0 302 96 287 185 108 0 chr3 209474677 209474742 -18049836 - MER112 DNA MER1_type -110 150 79 2242 98 0 7 chr3 209474968 209475287 -18049291 - AluSq SINE Alu 0 317 1 1448 189 31 21 chr3 209476143 209476434 -18048144 - AluJo SINE Alu -18 294 1 2140 72 15 0 chr3 209476846 209477108 -18047470 + AluSc SINE Alu 38 303 -6 2520 54 0 0 chr3 209478209 209478504 -18046074 + AluY SINE Alu 1 295 -16 2407 97 7 0 chr3 209478588 209478897 -18045681 - AluSx SINE Alu -1 311 1 1623 91 23 0 chr3 209479183 209479402 -18045176 + MER57A LTR ERV1 1 224 -179 2103 101 0 18 chr3 209479648 209479961 -18044617 + AluSg SINE Alu 1 308 0 1112 168 69 95 chr3 209480191 209480363 -18044215 + MLT1A1 LTR MaLR 1 163 -202 2478 35 42 0 chr3 209480363 209480648 -18043930 + AluY SINE Alu 1 297 -14 1112 168 69 95 chr3 209480648 209480779 -18043799 + MLT1A1 LTR MaLR 163 296 -69 653 187 0 8 chr3 209480779 209480902 -18043676 + MLT1A1-int LTR MaLR 6 127 -1608 2363 104 0 0 chr3 209482195 209482494 -18042084 - AluSg SINE Alu -11 299 1 261 190 17 0 chr3 209482697 209482755 -18041823 - MLT1-int LTR MaLR -484 887 829 28 48 0 0 chr3 209482786 209482828 -18041750 + AT_rich Low_complexity Low_complexity 1 42 0 3382 213 52 115 chr3 209482950 209483062 -18041516 + MLT1A1-int LTR MaLR 111 229 -1142 1803 150 201 8 chr3 209483062 209483421 -18041157 + MSTA LTR MaLR 1 428 0 3382 213 52 115 chr3 209483421 209484653 -18039925 + MLT1A1-int LTR MaLR 229 1370 -1 2097 172 3 24 chr3 209484654 209485027 -18039551 + MLT1A1 LTR MaLR 1 365 0 2174 107 7 0 chr3 209485131 209485421 -18039157 - AluSp SINE Alu -21 292 1 2337 112 0 0 chr3 209485799 209486102 -18038476 - AluSx SINE Alu -9 303 1 3270 113 29 0 chr3 209486150 209486636 -18037942 + L1MC1 LINE L1 5476 5975 -358 2457 65 3 19 chr3 209486637 209486946 -18037632 + AluY SINE Alu 1 304 -7 207 129 0 65 chr3 209487283 209487345 -18037233 + (TAAAA)n Simple_repeat Simple_repeat 2 59 0 5764 100 28 46 chr3 209487522 209488441 -18036137 - MER4D LTR ERV1 0 903 1 2109 121 145 21 chr3 209488605 209488985 -18035593 + MSTA LTR MaLR 2 428 0 28 0 0 0 chr3 209489219 209489247 -18035331 + AT_rich Low_complexity Low_complexity 1 28 0 530 265 13 7 chr3 209489256 209489407 -18035171 - L1MC5 LINE L1 -47 7914 7763 305 153 0 17 chr3 209489413 209489472 -18035106 - MER4D LTR ERV1 -262 641 584 396 212 101 28 chr3 209489472 209489651 -18034927 - L1MC5 LINE L1 -215 7746 7555 2250 112 0 0 chr3 209489854 209490148 -18034430 - AluSx SINE Alu -18 294 1 1000 99 15 0 chr3 209490415 209490546 -18034032 - AluSg SINE Alu -177 133 1 2374 192 44 24 chr3 209490554 209490881 -18033697 - L1MC3 LINE L1 -138 7647 7305 2324 98 16 0 chr3 209490881 209491187 -18033391 - AluSp SINE Alu -2 311 1 2374 192 44 24 chr3 209491187 209491358 -18033220 - L1MC3 LINE L1 -480 7305 7139 1930 132 17 10 chr3 209491715 209492010 -18032568 - AluSx SINE Alu -15 297 1 2319 103 0 3 chr3 209492350 209492651 -18031927 - AluSx SINE Alu -12 300 1 1599 136 45 4 chr3 209493019 209493283 -18031295 - Tigger2 DNA MER2_type -1 2717 2443 313 264 42 35 chr3 209493530 209493713 -18030865 + HAL1b LINE L1 790 2355 -152 205 292 67 51 chr3 209493728 209493880 -18030698 + MIR SINE MIR 1 159 -49 1022 176 11 5 chr3 209493881 209494068 -18030510 + MER5A DNA MER1_type 1 188 -1 970 193 45 58 chr3 209494081 209494249 -18030329 + MER58A DNA MER1_type 5 171 -2249 2206 100 31 0 chr3 209494249 209494540 -18030038 + AluSx SINE Alu 1 300 -12 970 193 45 58 chr3 209494540 209494594 -18029984 + MER58A DNA MER1_type 171 224 0 3130 133 7 3 chr3 209494860 209495540 -18029038 + MER72 LTR ERV1 8 722 0 1611 120 26 0 chr3 209495822 209496055 -18028523 + LTR28 LTR ERV1 1 239 -781 3183 117 11 114 chr3 209496939 209497233 -18027345 - MER4A LTR ERV1 0 600 412 2187 109 0 32 chr3 209497233 209497545 -18027033 - AluSx SINE Alu -10 302 1 3183 117 11 114 chr3 209497545 209497919 -18026659 - MER4A LTR ERV1 -188 412 1 2284 99 3 3 chr3 209498329 209498632 -18025946 - AluSx SINE Alu -9 303 1 22 35 0 0 chr3 209498998 209499027 -18025551 + AT_rich Low_complexity Low_complexity 1 29 0 510 122 243 9 chr3 209500077 209500151 -18024427 - MER3 DNA MER1_type 0 209 154 2446 93 0 0 chr3 209500151 209500451 -18024127 + AluSq SINE Alu 1 300 -13 510 122 243 9 chr3 209500451 209500483 -18024095 - MER3 DNA MER1_type -55 154 78 340 191 0 0 chr3 209501036 209501099 -18023479 - MER8 DNA MER2_type 0 239 177 306 80 0 193 chr3 209501203 209501291 -18023287 + L1MC3 LINE L1 7709 7779 -6 260 266 142 0 chr3 209502149 209502262 -18022316 + LTR16A1 LTR ERVL 329 457 0 655 278 122 30 chr3 209502440 209502907 -18021671 - L1M4 LINE L1 -893 5253 4744 1130 244 76 9 chr3 209502972 209503300 -18021278 + L1MC4 LINE L1 6342 6691 -1351 1340 192 58 21 chr3 209503324 209503705 -18020873 + L1MC4 LINE L1 6613 7123 -919 22 56 0 0 chr3 209504641 209504677 -18019901 + AT_rich Low_complexity Low_complexity 1 36 0 382 289 89 78 chr3 209504814 209505031 -18019547 + L1M4 LINE L1 3251 3464 -2682 2500 60 13 0 chr3 209505031 209505331 -18019247 + AluSp SINE Alu 1 304 -9 382 289 89 78 chr3 209505331 209505538 -18019040 + L1M4 LINE L1 3464 3680 -2466 2291 107 7 0 chr3 209505584 209505884 -18018694 + AluSx SINE Alu 1 302 -10 2340 96 3 7 chr3 209506174 209506477 -18018101 + AluSx SINE Alu 1 302 -10 764 146 0 76 chr3 209506556 209506700 -18017878 + FLAM_A SINE Alu 1 133 0 245 134 15 90 chr3 209506705 209506772 -18017806 + L1M4 LINE L1 3896 3957 -2189 289 252 17 61 chr3 209506778 209506906 -18017672 + L1P LINE L1 4902 5032 -1114 877 279 127 38 chr3 209507095 209507725 -18016853 + L1MC4a LINE L1 5254 5939 -1869 272 209 9 36 chr3 209507874 209507984 -18016594 + L1MCa LINE L1 1105 1211 -5215 507 143 187 0 chr3 209507984 209508075 -18016503 - Tigger1 DNA MER2_type -1 2417 2310 943 158 0 0 chr3 209508080 209508219 -18016359 - Tigger1 DNA MER2_type -2279 139 1 263 200 0 0 chr3 209508219 209508264 -18016314 + L1MCa LINE L1 1209 1253 -5173 3490 128 22 11 chr3 209508275 209508816 -18015762 - LTR10A LTR ERV1 -62 547 1 2020 168 107 32 chr3 209508858 209509675 -18014903 + L1MCa LINE L1 1244 2227 -4199 741 127 50 66 chr3 209509704 209509815 -18014763 - MER34C LTR ERV1 0 585 474 1832 155 126 90 chr3 209509815 209510001 -18014577 + LTR54 LTR ERV1 1 179 -331 252 0 0 0 chr3 209510001 209510029 -18014549 + (GA)n Simple_repeat Simple_repeat 1 28 0 1832 155 126 90 chr3 209510029 209510232 -18014346 + LTR54 LTR ERV1 179 414 -96 1783 103 12 8 chr3 209510232 209510485 -18014093 - AluY SINE Alu -13 298 45 1832 155 126 90 chr3 209510485 209510585 -18013993 + LTR54 LTR ERV1 414 509 -1 741 127 50 66 chr3 209510585 209510654 -18013924 - MER34C LTR ERV1 -111 474 408 618 101 0 0 chr3 209510655 209510734 -18013844 + MSTA LTR MaLR 134 212 -216 * 2272 131 5 67 chr3 209510731 209511006 -18013572 - MER34C LTR ERV1 -172 413 169 2352 156 50 31 chr3 209511006 209511190 -18013388 + MSTB LTR MaLR 1 180 -246 2377 90 3 7 chr3 209511190 209511489 -18013089 + AluSp SINE Alu 1 298 -15 2352 156 50 31 chr3 209511489 209511722 -18012856 + MSTB LTR MaLR 180 426 0 2272 131 5 67 chr3 209511722 209511850 -18012728 - MER34C LTR ERV1 -416 169 35 1107 252 20 63 chr3 209511852 209512346 -18012232 + L1MCa LINE L1 2316 2750 -3676 * 3069 147 36 9 chr3 209512320 209512849 -18011729 - L1PA15 LINE L1 -111 6054 5512 21903 181 44 21 chr3 209512849 209515447 -18009131 - ERVL LTR ERVL -969 4795 1997 1881 194 6 11 chr3 209515447 209515812 -18008766 - MLT1A1 LTR MaLR -2 363 1 21903 181 44 21 chr3 209515812 209517208 -18007370 - ERVL LTR ERVL -3767 1997 636 4554 60 5 0 chr3 209517448 209518002 -18006576 + LTR6B LTR ERV1 2 558 0 2389 89 3 0 chr3 209518011 209518313 -18006265 - AluSp SINE Alu -9 304 2 2962 220 50 37 chr3 209518393 209518800 -18005778 - MER21B LTR ERV1 -124 739 318 1698 183 7 7 chr3 209518800 209519095 -18005483 - AluJb SINE Alu -17 295 1 2962 220 50 37 chr3 209519095 209519409 -18005169 - MER21B LTR ERV1 -545 318 9 787 178 54 43 chr3 209519463 209519648 -18004930 + MER5A DNA MER1_type 1 187 -2 2305 95 30 0 chr3 209519846 209520141 -18004437 - AluSp SINE Alu -9 304 1 182 315 135 9 chr3 209520219 209520330 -18004248 + MIR SINE MIR 131 255 -7 1629 201 109 6 chr3 209520462 209520821 -18003757 - MSTD LTR MaLR 0 396 1 2285 128 0 0 chr3 209520995 209521307 -18003271 - AluSx SINE Alu 0 312 1 264 286 20 20 chr3 209521327 209521425 -18003153 - MIR3 SINE MIR -9 199 102 2302 110 3 0 chr3 209521940 209522239 -18002339 - AluSg SINE Alu -10 300 1 445 119 0 15 chr3 209522298 209522365 -18002213 + AluJb SINE Alu 53 118 -194 12489 116 28 98 chr3 209523015 209523576 -18001002 + Tigger4(Zombi) DNA MER2_type 1 600 -2131 2168 114 0 16 chr3 209523576 209523892 -18000686 + AluSq SINE Alu 1 311 -2 12489 116 28 98 chr3 209523892 209524192 -18000386 + Tigger4(Zombi) DNA MER2_type 600 920 -1811 1596 183 17 23 chr3 209524192 209524493 -18000085 - AluJo SINE Alu -13 299 1 12489 116 28 98 chr3 209524493 209525866 -17998712 + Tigger4(Zombi) DNA MER2_type 920 2066 -665 1766 140 11 21 chr3 209525866 209526151 -17998427 + AluJo SINE Alu 11 292 -20 12489 116 28 98 chr3 209526151 209526256 -17998322 + Tigger4(Zombi) DNA MER2_type 2066 2177 -554 2069 117 40 0 chr3 209526258 209526712 -17997866 + AluSq SINE Alu 1 466 0 267 31 0 0 chr3 209526730 209526762 -17997816 + (GGAA)n Simple_repeat Simple_repeat 1 32 0 3365 133 16 35 chr3 209526764 209526901 -17997677 + Tigger4(Zombi) DNA MER2_type 2167 2305 -426 2257 123 131 8 chr3 209526901 209527282 -17997296 + MSTA LTR MaLR 1 428 0 3365 133 16 35 chr3 209527282 209527680 -17996898 + Tigger4(Zombi) DNA MER2_type 2305 2693 -38 2224 119 0 0 chr3 209527680 209527973 -17996605 - AluSg SINE Alu -17 293 1 3365 133 16 35 chr3 209527973 209528006 -17996572 + Tigger4(Zombi) DNA MER2_type 2693 2725 -6 3403 136 31 42 chr3 209528463 209529107 -17995471 + L1MC1 LINE L1 5238 5874 -459 1044 155 134 5 chr3 209529107 209529294 -17995284 + AluJo SINE Alu 76 286 -26 543 276 67 46 chr3 209529322 209529805 -17994773 + L1 LINE L1 2539 3151 -2995 2415 77 0 13 chr3 209529805 209530115 -17994463 + AluY SINE Alu 1 306 -5 543 276 67 46 chr3 209530115 209530433 -17994145 + L1 LINE L1 3151 3461 -2685 231 213 82 93 chr3 209530454 209530637 -17993941 + L1 LINE L1 3519 3699 -2447 408 291 88 18 chr3 209530663 209530890 -17993688 + L1 LINE L1 4378 4620 -1526 369 291 69 29 chr3 209531080 209531530 -17993048 + L1 LINE L1 4882 5349 -797 404 279 199 50 chr3 209531725 209531929 -17992649 + HAL1 LINE L1 1455 1627 -880 2136 114 0 17 chr3 209531929 209532228 -17992350 + AluSx SINE Alu 1 294 -18 404 279 199 50 chr3 209532228 209532424 -17992154 + HAL1 LINE L1 1627 1915 -592 1631 123 0 16 chr3 209532783 209533027 -17991551 - AluSq SINE Alu 0 313 74 1479 48 0 26 chr3 209533129 209533318 -17991260 + AluY SINE Alu 128 311 0 282 278 21 10 chr3 209536319 209536416 -17988162 + MIR3 SINE MIR 88 185 -23 250 148 57 91 chr3 209536632 209536720 -17987858 - MIR SINE MIR -70 192 108 2118 65 4 33 chr3 209536726 209537001 -17987577 - AluSp SINE Alu -12 301 35 225 293 49 0 chr3 209538137 209538219 -17986359 + L2 LINE L2 3187 3272 0 339 315 104 12 chr3 209538278 209538519 -17986059 - L3 LINE CR1 -305 1272 1010 2249 75 58 3 chr3 209538779 209539072 -17985506 + AluSx SINE Alu 2 310 -2 252 253 25 13 chr3 209539580 209539659 -17984919 - ORSL DNA AcHobo -2 273 194 4119 210 70 19 chr3 209539783 209541116 -17983462 + L1ME1 LINE L1 3 1523 -5336 717 154 106 0 chr3 209541118 209541241 -17983337 + AluJo SINE Alu 2 137 -175 1809 260 95 21 chr3 209541241 209541748 -17982830 + L1ME1 LINE L1 1650 2118 -4841 1714 165 45 60 chr3 209541748 209542088 -17982490 + THE1C LTR MaLR 1 336 -39 2220 102 7 3 chr3 209542088 209542381 -17982197 - AluSg SINE Alu -16 294 1 1714 165 45 60 chr3 209542381 209542421 -17982157 + THE1C LTR MaLR 336 375 0 10299 109 20 39 chr3 209542424 209542809 -17981769 + THE1C-int LTR MaLR 4 395 -1185 2227 126 0 0 chr3 209542809 209543110 -17981468 - AluSx SINE Alu -11 301 1 10299 109 20 39 chr3 209543110 209544332 -17980246 + THE1C-int LTR MaLR 395 1580 0 1790 126 54 92 chr3 209544332 209544490 -17980088 + THE1C LTR MaLR 1 164 -211 2068 123 0 7 chr3 209544490 209544775 -17979803 - AluSx SINE Alu -9 303 21 1790 126 54 92 chr3 209544775 209545006 -17979572 + THE1C LTR MaLR 164 375 0 1809 260 95 21 chr3 209545006 209545201 -17979377 + L1ME1 LINE L1 2118 2409 -4550 331 218 0 0 chr3 209545268 209545323 -17979255 + Tigger5 DNA MER2_type 1 55 -2268 * 381 194 14 14 chr3 209545292 209545364 -17979214 + Tigger5 DNA MER2_type 2251 2322 -1 493 196 0 43 chr3 209545382 209545404 -17979174 - Tigger5 DNA MER2_type -2235 88 67 1247 184 90 57 chr3 209545404 209545555 -17979023 + MER2 DNA MER2_type 1 146 -198 2343 94 0 28 chr3 209545555 209545873 -17978705 - AluSc SINE Alu 0 309 1 1247 184 90 57 chr3 209545873 209546053 -17978525 + MER2 DNA MER2_type 146 343 -1 493 196 0 43 chr3 209546053 209546122 -17978456 - Tigger5 DNA MER2_type -2256 67 1 473 184 11 11 chr3 209546133 209546220 -17978358 + Tigger5 DNA MER2_type 2237 2323 0 5385 227 51 42 chr3 209546398 209547173 -17977405 + L1ME1 LINE L1 2593 3359 -3598 2336 91 0 7 chr3 209547173 209547470 -17977108 + AluSx SINE Alu 1 295 -17 5385 227 51 42 chr3 209547470 209548654 -17975924 + L1ME1 LINE L1 3359 4534 -2423 2643 123 18 53 chr3 209548654 209548863 -17975715 + Tigger2a DNA MER2_type 1 216 -2492 1806 163 121 40 chr3 209548863 209549268 -17975310 - LTR21B LTR ERV1 0 438 1 2643 123 18 53 chr3 209549268 209549507 -17975071 + Tigger2a DNA MER2_type 216 433 -1 2739 176 24 29 chr3 209549508 209550058 -17974520 + L1ME1 LINE L1 4533 5079 -1878 2231 96 0 13 chr3 209550061 209550384 -17974194 + AluSx SINE Alu 1 312 0 314 261 20 47 chr3 209550388 209550638 -17973940 - L1MCc LINE L1 -6034 389 18 392 200 25 12 chr3 209551534 209551614 -17972964 - MIR SINE MIR -181 81 1 2081 136 3 7 chr3 209552804 209553112 -17971466 + AluSq SINE Alu 1 307 -6 289 283 91 10 chr3 209553205 209553304 -17971274 - MIR SINE MIR -119 143 37 192 200 0 60 chr3 209554269 209554319 -17970259 - L2 LINE L2 -98 3215 3169 1093 218 65 10 chr3 209555179 209555487 -17969091 + L1ME1 LINE L1 5327 5651 -1306 2477 196 93 58 chr3 209555601 209555724 -17968854 + L1ME1 LINE L1 5931 6048 -929 2465 72 0 0 chr3 209555724 209556015 -17968563 + AluSq SINE Alu 1 291 -22 2477 196 93 58 chr3 209556015 209556494 -17968084 + L1ME1 LINE L1 6048 6486 -491 2045 112 7 14 chr3 209556494 209556790 -17967788 + AluSx SINE Alu 1 294 -18 2477 196 93 58 chr3 209556790 209557147 -17967431 + L1ME1 LINE L1 6486 6829 -148 433 278 108 73 chr3 209557203 209557628 -17966950 - L1ME4a LINE L1 -16 6105 5656 2419 79 0 7 chr3 209557628 209557932 -17966646 - AluSg SINE Alu -8 302 1 433 278 108 73 chr3 209557932 209558043 -17966535 - L1ME4a LINE L1 -465 5656 5550 260 156 15 156 chr3 209558525 209558660 -17965918 + LTR38B LTR ERV1 1 116 -494 2108 105 41 0 chr3 209559220 209559514 -17965064 - AluSq SINE Alu -7 306 1 861 130 8 0 chr3 209559870 209559993 -17964585 - FLAM_C SINE Alu -9 124 1 2437 54 6 35 chr3 209560036 209560351 -17964227 - AluY SINE Alu -5 306 1 2332 224 43 11 chr3 209560485 209561043 -17963535 + L1ME2 LINE L1 5555 6130 -34 26 0 0 0 chr3 209561074 209561100 -17963478 + AT_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr3 209563472 209563497 -17961081 + AT_rich Low_complexity Low_complexity 1 25 0 39 38 0 0 chr3 209563959 209564012 -17960566 + AT_rich Low_complexity Low_complexity 1 53 0 336 148 56 0 chr3 209564023 209564077 -17960501 - MLT1J2 LTR MaLR -6 444 388 393 279 137 26 chr3 209564110 209564343 -17960235 - MLT1J2 LTR MaLR -127 323 65 424 287 168 23 chr3 209564500 209564943 -17959635 - L1MC4a LINE L1 -304 5817 5385 1615 167 34 125 chr3 209564943 209565351 -17959227 + MLT1A2 LTR MaLR 3 373 -1 424 287 168 23 chr3 209565351 209565409 -17959169 - L1MC4a LINE L1 -736 5385 5337 908 216 151 55 chr3 209565425 209565717 -17958861 - MLT1C LTR MaLR 0 467 186 22 0 0 0 chr3 209565762 209565784 -17958794 + AT_rich Low_complexity Low_complexity 1 22 0 615 156 111 7 chr3 209565821 209565956 -17958622 - Zaphod DNA AcHobo -261 3770 3622 232 184 0 79 chr3 209565972 209566048 -17958530 - Zaphod DNA AcHobo -3038 993 924 1797 242 41 11 chr3 209566061 209566503 -17958075 - Zaphod DNA AcHobo -3543 488 34 2311 107 3 0 chr3 209566566 209566876 -17957702 - AluSx SINE Alu -1 311 1 542 197 17 8 chr3 209566877 209566994 -17957584 + L1ME3 LINE L1 6041 6158 -4 299 280 308 11 chr3 209567403 209567585 -17956993 + MIR SINE MIR 12 247 -15 2454 74 3 0 chr3 209569021 209569320 -17955258 + AluSp SINE Alu 2 301 -12 258 293 75 9 chr3 209569472 209569578 -17955000 - MIR SINE MIR -119 143 31 327 223 108 81 chr3 209570198 209570346 -17954232 + MIR3 SINE MIR 39 190 -18 912 209 0 12 chr3 209570458 209570630 -17953948 + FRAM SINE Alu 1 167 -9 552 214 35 132 chr3 209570799 209571056 -17953522 - L1MC5 LINE L1 -66 7895 7664 1480 189 0 8 chr3 209571578 209571856 -17952722 - AluJo SINE Alu 0 312 43 237 246 0 16 chr3 209572217 209572278 -17952300 + GA-rich Low_complexity Low_complexity 1 60 0 531 229 9 0 chr3 209572429 209572538 -17952040 + MER69 DNA AcHobo 6 115 -2411 570 246 120 6 chr3 209573858 209573987 -17950591 + MIR SINE MIR 20 176 -86 2346 108 3 0 chr3 209573987 209574294 -17950284 - AluSx SINE Alu -4 308 1 570 246 120 6 chr3 209574294 209574339 -17950239 + MIR SINE MIR 176 214 -48 1896 151 6 35 chr3 209574652 209574971 -17949607 - AluJb SINE Alu -2 310 1 430 275 120 30 chr3 209575960 209576162 -17948416 - MLT1L LTR MaLR -200 311 111 245 192 0 19 chr3 209576337 209576389 -17948189 + CT-rich Low_complexity Low_complexity 2 52 0 1370 178 58 10 chr3 209576660 209576969 -17947609 - MER33 DNA MER1_type 0 324 1 392 223 21 11 chr3 209576980 209577074 -17947504 - MER20B DNA MER1_type -4 779 685 5333 82 34 1 chr3 209577134 209577803 -17946775 - LTR8 LTR ERV1 0 691 1 252 339 25 25 chr3 209577809 209577927 -17946651 - MLT1J2 LTR MaLR -60 390 273 533 191 83 42 chr3 209577952 209578139 -17946439 - MLT1J1 LTR MaLR -230 220 17 568 177 79 59 chr3 209578140 209578343 -17946235 - MER20B DNA MER1_type -99 684 478 2330 64 3 24 chr3 209578406 209578740 -17945838 + AluSp SINE Alu 1 313 0 489 223 50 16 chr3 209578742 209578863 -17945715 - MER20B DNA MER1_type -497 286 162 2196 89 0 4 chr3 209579585 209579866 -17944712 + AluSx SINE Alu 1 280 -32 243 0 0 0 chr3 209579866 209579893 -17944685 + (TAA)n Simple_repeat Simple_repeat 1 27 0 358 254 25 74 chr3 209580799 209580862 -17943716 - MLT1J LTR MaLR -294 217 161 2029 191 139 70 chr3 209580862 209581243 -17943335 - MER119 DNA MER1_type 0 583 151 2324 103 0 0 chr3 209581243 209581543 -17943035 + AluSx SINE Alu 1 300 -12 2029 191 139 70 chr3 209581543 209581706 -17942872 - MER119 DNA MER1_type -432 151 1 358 254 25 74 chr3 209581706 209581764 -17942814 - MLT1J LTR MaLR -350 161 102 579 252 84 44 chr3 209581899 209582034 -17942544 - MIR SINE MIR 0 262 134 285 109 0 0 chr3 209582034 209582080 -17942498 + (TA)n Simple_repeat Simple_repeat 2 47 0 579 252 84 44 chr3 209582080 209582194 -17942384 - MIR SINE MIR -128 134 3 1620 89 201 42 chr3 209582950 209583209 -17941369 - AluSx SINE Alu -2 300 1 193 250 58 0 chr3 209583334 209583386 -17941192 - MIR SINE MIR -97 165 111 510 274 50 89 chr3 209584111 209584469 -17940109 + L2 LINE L2 2921 3264 -8 1892 185 174 9 chr3 209584522 209584548 -17940030 + MER34 LTR ERV1 1 21 -521 3057 63 3 8 chr3 209584548 209584915 -17939663 + L1PA8 LINE L1 5800 6164 -8 1892 185 174 9 chr3 209584915 209585353 -17939225 + MER34 LTR ERV1 21 542 0 3231 158 50 2 chr3 209586543 209587068 -17937510 - MER41D LTR ERV1 -7 550 1 272 327 50 10 chr3 209587136 209587237 -17937341 + MIR SINE MIR 8 112 -150 2316 103 0 6 chr3 209587246 209587557 -17937021 - AluSc SINE Alu 0 309 1 706 272 18 6 chr3 209588160 209588329 -17936249 + MER5B DNA MER1_type 1 171 -7 21 36 0 0 chr3 209588655 209588683 -17935895 + AT_rich Low_complexity Low_complexity 1 28 0 259 146 109 0 chr3 209588937 209588992 -17935586 - MER41D LTR ERV1 -496 61 1 1058 78 0 0 chr3 209589227 209589382 -17935196 - AluSg/x SINE Alu 0 306 152 2064 218 49 35 chr3 209589594 209590167 -17934411 - MER74B LTR ERVL -39 583 3 3459 184 73 29 chr3 209590338 209590589 -17933989 - L1ME1 LINE L1 -2 6164 5926 1832 156 8 131 chr3 209590589 209590732 -17933846 + MER7A DNA MER2_type 1 160 -2878 1842 156 3 31 chr3 209590732 209591053 -17933525 - AluJo SINE Alu 0 312 1 1832 156 8 131 chr3 209591053 209591306 -17933272 + MER7A DNA MER2_type 160 346 0 3459 184 73 29 chr3 209591306 209591520 -17933058 - L1ME1 LINE L1 -240 5926 5723 2140 106 34 0 chr3 209591520 209591812 -17932766 + AluSx SINE Alu 1 302 -10 3459 184 73 29 chr3 209591812 209592421 -17932157 - L1ME1 LINE L1 -443 5723 5036 2013 240 117 48 chr3 209592437 209593195 -17931383 - MER21B LTR ERV1 -52 811 1 942 158 59 30 chr3 209593196 209593284 -17931294 - L1ME1 LINE L1 -1086 5060 4976 2335 141 98 36 chr3 209593284 209593646 -17930932 - MER65A LTR ERV1 0 445 51 2285 85 0 0 chr3 209593646 209593962 -17930616 - AluSg SINE Alu 0 316 1 2335 141 98 36 chr3 209593962 209594017 -17930561 - MER65A LTR ERV1 -394 51 1 942 158 59 30 chr3 209594017 209594131 -17930447 - L1ME1 LINE L1 -1170 4976 4852 864 217 258 7 chr3 209594128 209594423 -17930155 + L1MD2 LINE L1 5964 6332 -27 * 2382 105 0 6 chr3 209594478 209594793 -17929785 - AluSq SINE Alu 0 313 1 1167 180 79 28 chr3 209594815 209595132 -17929446 - L1ME1 LINE L1 -1286 4860 4528 293 242 86 94 chr3 209595646 209595722 -17928856 + L2 LINE L2 3146 3222 -50 3892 34 9 0 chr3 209595722 209596163 -17928415 - L1PA4 LINE L1 0 6155 5711 293 242 86 94 chr3 209596163 209596214 -17928364 + L2 LINE L2 3222 3272 0 19565 24 0 0 chr3 209596384 209598899 -17925679 - L1PA4 LINE L1 -921 5225 2711 932 39 182 116 chr3 209598921 209599052 -17925526 - MER30 DNA MER1_type 0 230 81 2126 97 4 4 chr3 209599052 209599350 -17925228 - AluSc SINE Alu 0 298 1 932 39 182 116 chr3 209599350 209599398 -17925180 - MER30 DNA MER1_type -149 81 38 26 0 0 0 chr3 209599792 209599818 -17924760 + AT_rich Low_complexity Low_complexity 1 26 0 333 283 108 24 chr3 209599884 209600050 -17924528 - MIR SINE MIR -35 227 48 327 276 79 13 chr3 209600129 209600281 -17924297 + MIR SINE MIR 95 256 -6 268 310 27 82 chr3 209600631 209600751 -17923827 - MER5A DNA MER1_type -4 185 77 2235 115 3 0 chr3 209600751 209601047 -17923531 - AluSq SINE Alu -14 299 3 268 310 27 82 chr3 209601047 209601110 -17923468 - MER5A DNA MER1_type -112 77 12 228 264 71 114 chr3 209601586 209601647 -17922931 - L2 LINE L2 -214 3058 2996 2335 103 0 0 chr3 209601647 209601948 -17922630 + AluSx SINE Alu 1 301 -11 228 264 71 114 chr3 209601948 209602026 -17922552 - L2 LINE L2 -276 2996 2925 1830 78 0 0 chr3 209603053 209603316 -17921262 + AluY SINE Alu 63 325 0 1108 128 0 41 chr3 209603403 209603575 -17921003 + FRAM SINE Alu 1 165 -11 180 0 0 0 chr3 209604086 209604106 -17920472 + (A)n Simple_repeat Simple_repeat 1 20 0 27 29 0 0 chr3 209604356 209604390 -17920188 + AT_rich Low_complexity Low_complexity 1 34 0 231 103 0 0 chr3 209604582 209604621 -17919957 + (TTTG)n Simple_repeat Simple_repeat 2 40 0 2110 104 4 4 chr3 209604623 209604903 -17919675 - AluSx SINE Alu -32 280 1 2221 103 7 0 chr3 209605429 209605720 -17918858 - AluSg SINE Alu -17 293 1 200 194 0 0 chr3 209605789 209605825 -17918753 + T-rich Low_complexity Low_complexity 2 37 0 1860 135 44 0 chr3 209607408 209607682 -17916896 - AluSq SINE Alu -27 286 1 304 295 92 69 chr3 209608098 209608315 -17916263 - L2 LINE L2 -8 3264 3043 21 36 0 0 chr3 209608375 209608403 -17916175 + AT_rich Low_complexity Low_complexity 1 28 0 2768 86 17 6 chr3 209608510 209608870 -17915708 + THE1B LTR MaLR 1 364 0 10484 104 36 29 chr3 209608870 209610439 -17914139 + THE1B-int LTR MaLR 1 1580 0 4556 90 0 0 chr3 209610452 209611041 -17913537 - HERVL LTR ERVL -5025 629 41 271 148 37 9 chr3 209611150 209611258 -17913320 + (TA)n Simple_repeat Simple_repeat 1 111 0 641 246 80 49 chr3 209612383 209612607 -17911971 - MLT1D LTR MaLR -1 504 274 2142 119 0 31 chr3 209612651 209612969 -17911609 - AluSg SINE Alu -2 308 1 200 194 0 0 chr3 209613038 209613074 -17911504 + T-rich Low_complexity Low_complexity 2 37 0 1820 233 45 11 chr3 209615359 209615806 -17908772 - MLT1C LTR MaLR 0 467 6 749 153 0 8 chr3 209617413 209617537 -17907041 - FLAM_A SINE Alu -8 134 12 1760 149 38 62 chr3 209617677 209617887 -17906691 - MER46B DNA MER2_type -2496 235 161 2201 122 0 0 chr3 209617887 209618190 -17906388 + AluSx SINE Alu 1 303 -9 1760 149 38 62 chr3 209618190 209618348 -17906230 - MER46B DNA MER2_type -2570 161 1 382 262 90 16 chr3 209620119 209620241 -17904337 - MIR SINE MIR -109 153 23 236 336 49 41 chr3 209620316 209620438 -17904140 - MER91A DNA MER1_type -36 160 38 230 341 11 0 chr3 209620822 209620910 -17903668 + L2 LINE L2 2267 2355 -959 317 214 97 29 chr3 209622550 209622653 -17901925 - MER112 DNA MER1_type -112 148 39 2268 108 3 0 chr3 209622678 209622973 -17901605 + AluSx SINE Alu 1 296 -16 198 265 44 15 chr3 209624549 209624617 -17899961 + MIR SINE MIR 82 151 -111 829 190 29 11 chr3 209627193 209627367 -17897211 + MER96B DNA MER1_type? 3 179 -238 232 227 23 11 chr3 209627680 209627768 -17896810 + (TA)n Simple_repeat Simple_repeat 1 89 0 266 275 37 37 chr3 209627777 209627886 -17896692 + MER112 DNA MER1_type 152 260 0 417 246 40 16 chr3 209629466 209629592 -17894986 - MIR SINE MIR -24 238 110 1268 175 18 0 chr3 209630658 209630875 -17893703 - MER2 DNA MER2_type 0 345 125 759 199 103 0 chr3 209630875 209631031 -17893547 + FRAM SINE Alu 1 172 -4 598 188 30 53 chr3 209631031 209631164 -17893414 - MER2 DNA MER2_type -213 132 3 654 122 0 0 chr3 209631347 209631437 -17893141 + 5S rRNA rRNA 1 90 -31 2540 72 0 0 chr3 209631498 209631805 -17892773 + AluSg SINE Alu 1 307 -3 192 77 0 0 chr3 209633930 209633956 -17890622 + (T)n Simple_repeat Simple_repeat 1 26 0 33 25 0 0 chr3 209635674 209635714 -17888864 + GC_rich Low_complexity Low_complexity 1 40 0 339 383 0 6 chr3 209636557 209636732 -17887846 + C-rich Low_complexity Low_complexity 2 175 0 219 292 53 18 chr3 209636694 209636865 -17887713 + (CCCG)n Simple_repeat Simple_repeat 3 179 0 * 371 302 0 39 chr3 209636796 209636978 -17887600 + C-rich Low_complexity Low_complexity 4 178 0 1204 110 0 0 chr3 209637393 209637556 -17887022 - AluSg/x SINE Alu -13 299 137 26 0 0 0 chr3 209638326 209638352 -17886226 + AT_rich Low_complexity Low_complexity 1 26 0 272 290 0 0 chr3 209638429 209638498 -17886080 + L2 LINE L2 3203 3271 -1 1659 173 0 52 chr3 209638821 209639145 -17885433 + AluJo SINE Alu 1 307 -5 1932 130 6 51 chr3 209640476 209640520 -17884058 - Tigger3(Golem) DNA MER2_type -1 3028 2984 2257 105 7 0 chr3 209640520 209640814 -17883764 - AluSx SINE Alu -16 296 1 1932 130 6 51 chr3 209640814 209641165 -17883413 - Tigger3(Golem) DNA MER2_type -45 2984 2 16493 17 1 1 chr3 209645834 209648513 -17876065 + L1HS LINE L1 3479 6155 0 457 250 90 121 chr3 209649565 209649847 -17874731 - L1MC4a LINE L1 -476 5645 5729 2099 127 0 3 chr3 209649847 209650139 -17874439 - AluSq SINE Alu -20 293 3 457 250 90 121 chr3 209650139 209650543 -17874035 - L1MC4a LINE L1 -391 5730 5315 1778 203 143 24 chr3 209650788 209651298 -17873280 - MLT1E3 LTR MaLR -2 652 1 1709 179 0 20 chr3 209651452 209651754 -17872824 + AluJo SINE Alu 1 296 -16 2056 109 4 4 chr3 209652874 209653182 -17871396 + AluSq SINE Alu 9 316 0 459 222 11 0 chr3 209653879 209653969 -17870609 - L2 LINE L2 0 3272 3182 241 216 39 0 chr3 209654093 209654144 -17870434 - MIR3 SINE MIR -31 177 125 365 278 181 0 chr3 209654313 209654457 -17870121 + MIR SINE MIR 89 258 -4 735 177 0 8 chr3 209655101 209655231 -17869347 - L1MA9 LINE L1 -4 6308 6180 183 80 0 0 chr3 209655233 209655258 -17869320 + (TG)n Simple_repeat Simple_repeat 2 26 0 1086 171 43 9 chr3 209655259 209655470 -17869108 + L1MA9 LINE L1 5922 6139 -173 2032 82 0 0 chr3 209656823 209657080 -17867498 - AluSc SINE Alu -14 295 39 304 322 75 2 chr3 209657281 209657455 -17867123 + MIR SINE MIR 22 207 -55 740 326 21 4 chr3 209657481 209657723 -17866855 - MIR SINE MIR -1 261 16 240 282 13 13 chr3 209660106 209660184 -17864394 - L3 LINE CR1 -2 1575 1498 225 0 0 0 chr3 209660640 209660665 -17863913 + (CAAAAA)n Simple_repeat Simple_repeat 2 26 0 223 301 158 23 chr3 209660665 209660705 -17863873 - MIR SINE MIR -21 241 208 2206 95 11 0 chr3 209660705 209660988 -17863590 - AluSg SINE Alu -2 308 23 223 301 158 23 chr3 209660988 209661080 -17863498 - MIR SINE MIR -54 208 91 728 184 0 32 chr3 209661113 209661238 -17863340 + FLAM_A SINE Alu 1 121 -12 405 263 151 26 chr3 209661290 209661442 -17863136 + MIR SINE MIR 53 219 -43 926 243 0 9 chr3 209661767 209661977 -17862601 + MIR SINE MIR 9 216 -46 517 249 148 52 chr3 209662422 209662927 -17861651 + L1ME4a LINE L1 5311 5884 -237 266 324 19 0 chr3 209662927 209663032 -17861546 + L1ME LINE L1 5778 5884 -237 400 318 14 7 chr3 209663032 209663180 -17861398 + L1ME4a LINE L1 5778 5926 -195 2320 99 0 0 chr3 209663657 209663951 -17860627 - AluSx SINE Alu -18 294 1 261 180 70 109 chr3 209663983 209664111 -17860467 + L1ME4a LINE L1 5950 6072 -49 195 42 0 0 chr3 209664127 209664151 -17860427 + (TG)n Simple_repeat Simple_repeat 1 24 0 2162 90 10 10 chr3 209664625 209664925 -17859653 - AluSg SINE Alu -10 300 1 1264 131 0 0 chr3 209665779 209665955 -17858623 - AluSg/x SINE Alu -2 310 135 2454 90 3 0 chr3 209665956 209666266 -17858312 - AluSq SINE Alu -2 311 1 1707 95 16 56 chr3 209666417 209666669 -17857909 - AluSx SINE Alu -70 242 1 3721 179 148 40 chr3 209667710 209667825 -17856753 - L1MB7 LINE L1 0 6682 6581 2031 112 7 10 chr3 209667825 209668147 -17856431 - AluSc SINE Alu 0 309 1 3721 179 148 40 chr3 209668147 209668759 -17855819 - L1MB7 LINE L1 -101 6581 6036 222 37 0 0 chr3 209668759 209668786 -17855792 + (TTA)n Simple_repeat Simple_repeat 2 28 0 3721 179 148 40 chr3 209668786 209669271 -17855307 - L1MB7 LINE L1 -646 6036 5345 6487 224 39 30 chr3 209669275 209670003 -17854575 - L1MB7 LINE L1 -4759 1887 1167 2372 95 3 16 chr3 209670003 209670319 -17854259 - AluSx SINE Alu 0 312 1 6487 224 39 30 chr3 209670319 209671343 -17853235 - L1MB7 LINE L1 -5479 1167 101 3858 53 4 0 chr3 209671343 209671816 -17852762 + L1P LINE L1 3875 4349 -1797 8793 62 4 6 chr3 209671926 209673758 -17850820 - L1PA5 LINE L1 -75 6079 4255 253 341 11 0 chr3 209674343 209674431 -17850147 + L2 LINE L2 2267 2355 -959 209 351 53 43 chr3 209674877 209675065 -17849513 + L2 LINE L2 2654 2843 -471 3151 119 36 11 chr3 209676341 209676811 -17847767 + THE1-int LTR MaLR 1099 1580 0 4369 105 3 19 chr3 209676824 209677413 -17847165 - HERVL LTR ERVL -5025 629 49 2105 84 44 0 chr3 209677413 209677688 -17846890 + AluY SINE Alu 23 309 -2 4369 105 3 19 chr3 209677688 209677737 -17846841 - HERVL LTR ERVL -5605 49 1 1169 244 77 40 chr3 209677746 209678095 -17846483 + MLT2B3 LTR ERVL 192 553 -1 237 349 12 0 chr3 209678119 209678202 -17846376 - MIR3 SINE MIR -6 202 119 761 208 88 46 chr3 209679440 209679656 -17844922 - MLT1D LTR MaLR -7 498 274 1830 118 3 44 chr3 209679724 209680020 -17844558 - AluSg SINE Alu -26 284 1 1954 142 4 0 chr3 209682118 209682399 -17842179 - AluSx SINE Alu -30 282 1 523 243 43 65 chr3 209683092 209683142 -17841436 + MLT1F LTR MaLR 1 51 -491 1445 213 136 20 chr3 209683142 209683494 -17841084 + MSTD LTR MaLR 2 394 -2 523 243 43 65 chr3 209683494 209683628 -17840950 + MLT1F LTR MaLR 51 181 -361 228 62 0 0 chr3 209683630 209683644 -17840934 + (TC)n Simple_repeat Simple_repeat 1 14 -18 2266 93 0 7 chr3 209683644 209683935 -17840643 - AluSg SINE Alu -21 289 1 228 62 0 0 chr3 209683935 209683952 -17840626 + (TC)n Simple_repeat Simple_repeat 13 32 0 224 308 15 0 chr3 209683991 209684056 -17840522 + L2 LINE L2 3207 3272 0 371 322 213 6 chr3 209684992 209685166 -17839412 + MIR SINE MIR 20 229 -33 2370 97 0 0 chr3 209685378 209685677 -17838901 + AluSq SINE Alu 1 299 -14 367 318 162 0 chr3 209686388 209686536 -17838042 + MIR SINE MIR 20 191 -71 2423 56 3 0 chr3 209686652 209686964 -17837614 + AluSp SINE Alu 1 313 0 400 238 241 50 chr3 209687472 209687791 -17836787 + HAL1 LINE L1 2037 2416 -91 1128 165 87 0 chr3 209687863 209688069 -17836509 - AluJo SINE Alu -88 224 1 358 266 232 5 chr3 209688144 209688351 -17836227 + L1MC4a LINE L1 5589 5842 -1966 243 188 0 0 chr3 209688636 209688684 -17835894 + (TG)n Simple_repeat Simple_repeat 1 48 0 1180 211 78 99 chr3 209688720 209689244 -17835334 - HAL1b LINE L1 -4 1344 832 1621 170 32 3 chr3 209689244 209689526 -17835052 - AluJo SINE Alu -20 292 3 1180 211 78 99 chr3 209689526 209689579 -17834999 - HAL1b LINE L1 -516 832 779 238 254 0 0 chr3 209689876 209689931 -17834647 - HAL1b LINE L1 -556 792 738 2316 76 0 54 chr3 209689951 209690266 -17834312 + AluY SINE Alu 1 298 -13 257 312 159 13 chr3 209690281 209690438 -17834140 - L1MC4a LINE L1 -1658 6150 5971 840 259 45 0 chr3 209690454 209690697 -17833881 - L1MC4a LINE L1 -1905 5903 5650 1348 147 0 5 chr3 209690747 209690944 -17833634 - AluJo SINE Alu -116 196 1 339 242 0 111 chr3 209690944 209691097 -17833481 - HAL1b LINE L1 -665 683 548 274 125 0 0 chr3 209691097 209691145 -17833433 + AluSc SINE Alu 252 299 0 1028 257 98 35 chr3 209691145 209691627 -17832951 - HAL1b LINE L1 -792 556 45 2161 165 42 21 chr3 209691865 209692247 -17832331 + MLT1B LTR MaLR 1 390 0 2540 63 0 0 chr3 209692257 209692559 -17832019 - AluY SINE Alu -9 302 1 277 266 221 32 chr3 209695219 209695373 -17829205 - MER5A DNA MER1_type 0 189 7 1868 161 0 3 chr3 209695469 209695755 -17828823 - AluSx SINE Alu -27 285 1 2452 65 3 0 chr3 209698466 209698773 -17825805 + AluSp SINE Alu 1 308 -5 890 153 0 0 chr3 209698961 209699098 -17825480 + FRAM SINE Alu 1 137 -39 189 0 0 0 chr3 209699107 209699128 -17825450 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 1905 135 3 3 chr3 209699145 209699448 -17825130 + AluSq SINE Alu 11 313 0 2053 118 0 10 chr3 209699923 209700220 -17824358 - AluSx SINE Alu -16 296 3 704 239 128 72 chr3 209700749 209701204 -17823374 + L2 LINE L2 2673 3141 -172 2063 123 7 0 chr3 209701207 209701508 -17823070 + AluSx SINE Alu 1 303 -9 1499 139 100 42 chr3 209701530 209701840 -17822738 - MER44D DNA MER2_type 0 609 12 533 248 50 25 chr3 209701853 209702014 -17822564 + L2 LINE L2 3149 3313 0 253 354 0 10 chr3 209702096 209702195 -17822383 - MIR3 SINE MIR -35 173 76 2197 106 0 13 chr3 209702227 209702539 -17822039 + AluSx SINE Alu 1 308 -4 286 249 158 65 chr3 209703874 209704074 -17820504 - MIR SINE MIR -25 237 1 258 200 78 44 chr3 209704354 209704444 -17820134 - L2 LINE L2 -564 2750 2658 354 293 27 41 chr3 209704582 209704729 -17819849 - MIR SINE MIR -54 208 64 580 189 145 25 chr3 209704850 209705009 -17819569 - MER45A DNA AcHobo 0 178 1 1484 171 0 15 chr3 209705218 209705492 -17819086 - AluJo SINE Alu -21 291 22 921 179 49 0 chr3 209705647 209705809 -17818769 + LTR47A LTR ERVL 197 366 -86 182 237 172 95 chr3 209706505 209706674 -17817904 - L2 LINE L2 -181 3091 2910 1257 157 5 9 chr3 209706801 209707018 -17817560 + AluJb SINE Alu 81 296 -16 397 358 28 6 chr3 209707394 209707573 -17817005 - MIR SINE MIR -6 256 74 2063 114 0 7 chr3 209707672 209707979 -17816599 + AluSq SINE Alu 1 305 -8 223 375 19 10 chr3 209707990 209708094 -17816484 + L2 LINE L2 3168 3272 0 1033 228 14 5 chr3 209708211 209708426 -17816152 + MER20 DNA MER1_type 3 219 0 1705 218 36 20 chr3 209708694 209709139 -17815439 + L1M4 LINE L1 3786 4237 -1909 1184 205 66 23 chr3 209709187 209709534 -17815044 + L1M4 LINE L1 4426 4787 -1359 1166 72 0 7 chr3 209709666 209709843 -17814735 - AluSq SINE Alu 0 306 131 342 219 0 0 chr3 209709847 209709911 -17814667 + L1MC4 LINE L1 6640 6703 -1339 201 195 0 0 chr3 209709912 209709953 -17814625 + (TATATG)n Simple_repeat Simple_repeat 2 42 0 2394 54 0 0 chr3 209709954 209710248 -17814330 - AluY SINE Alu -17 294 1 1040 74 7 0 chr3 209710248 209710383 -17814195 - AluSq SINE Alu -176 136 1 206 299 144 58 chr3 209710893 209711067 -17813511 + L2 LINE L2 3044 3232 -40 1608 107 9 0 chr3 209711067 209711300 -17813278 + AluSg/x SINE Alu 70 304 -6 236 197 152 0 chr3 209711408 209711474 -17813104 + LTR33 LTR ERVL 4 79 -442 849 266 96 51 chr3 209711614 209712097 -17812481 + L2 LINE L2 2772 3270 -2 860 176 0 38 chr3 209712792 209712951 -17811627 - AluJ SINE Alu -31 281 129 330 26 0 0 chr3 209712951 209712990 -17811588 + (TTCC)n Simple_repeat Simple_repeat 4 42 0 856 133 0 0 chr3 209713015 209713143 -17811435 - AluJ SINE Alu -170 132 5 207 114 0 0 chr3 209714040 209714075 -17810503 + (TC)n Simple_repeat Simple_repeat 1 35 0 300 53 0 0 chr3 209714077 209714115 -17810463 + (CA)n Simple_repeat Simple_repeat 2 39 0 383 330 39 16 chr3 209714589 209714771 -17809807 + MER5A DNA MER1_type 1 186 -3 266 216 68 101 chr3 209714779 209714927 -17809651 + MIR SINE MIR 120 262 0 2207 104 7 0 chr3 209716055 209716362 -17808216 + AluSx SINE Alu 1 309 -3 791 277 50 36 chr3 209716506 209716784 -17807794 - L2 LINE L2 -1 3312 3031 2663 200 25 38 chr3 209716795 209716832 -17807746 + MER68 LTR ERV1 1 37 -525 1939 133 7 3 chr3 209716832 209717141 -17807437 + AluSx SINE Alu 1 310 -2 2663 200 25 38 chr3 209717141 209717659 -17806919 + MER68 LTR ERV1 37 549 -13 472 261 280 4 chr3 209717719 209717980 -17806598 - L2 LINE L2 -384 2930 2598 260 231 34 147 chr3 209718046 209718233 -17806345 + L2 LINE L2 3005 3161 -152 2229 94 0 0 chr3 209718233 209718530 -17806048 + AluY SINE Alu 1 297 -14 260 231 34 147 chr3 209718530 209718580 -17805998 + L2 LINE L2 3161 3215 -98 324 298 73 80 chr3 209718949 209719469 -17805109 + L2 LINE L2 2538 3059 -213 2040 106 3 26 chr3 209719783 209720094 -17804484 - AluSx SINE Alu -8 304 1 436 204 31 10 chr3 209720095 209720193 -17804385 + L2 LINE L2 3211 3310 -3 788 238 136 9 chr3 209720298 209720512 -17804066 - MIR SINE MIR 0 262 22 2201 83 7 0 chr3 209720889 209721178 -17803400 + AluSq SINE Alu 1 291 -22 656 286 17 11 chr3 209721326 209721501 -17803077 - MIR SINE MIR -67 195 20 312 272 35 18 chr3 209721952 209722066 -17802512 + L1MC5 LINE L1 7796 7911 -50 196 267 22 0 chr3 209723062 209723107 -17801471 + L2 LINE L2 2740 2785 -529 533 199 60 66 chr3 209723207 209723373 -17801205 + L2 LINE L2 3099 3263 -50 426 207 227 47 chr3 209723852 209724002 -17800576 - MER5A DNA MER1_type -2 187 11 1706 160 0 35 chr3 209725233 209725374 -17799204 + AluJo SINE Alu 1 145 -167 2195 89 0 3 chr3 209725374 209725666 -17798912 + AluY SINE Alu 1 291 -20 1706 160 0 35 chr3 209725666 209725837 -17798741 + AluJo SINE Alu 145 302 -10 225 0 0 0 chr3 209728252 209728277 -17796301 + (CA)n Simple_repeat Simple_repeat 2 26 0 650 203 32 0 chr3 209729909 209730032 -17794546 - L1PA16 LINE L1 -61 6105 5979 403 313 22 15 chr3 209730086 209730220 -17794358 + MER5B DNA MER1_type 21 155 -23 27 29 0 0 chr3 209730649 209730683 -17793895 + AT_rich Low_complexity Low_complexity 1 34 0 1481 189 10 20 chr3 209730731 209731032 -17793546 + AluJb SINE Alu 1 298 -14 347 174 0 31 chr3 209731786 209731863 -17792715 + AluSg/x SINE Alu 134 188 -112 3903 150 33 17 chr3 209732802 209733527 -17791051 - L1MB3 LINE L1 0 6183 5447 277 266 181 0 chr3 209733594 209733688 -17790890 + L2 LINE L2 3159 3269 -3 325 278 10 21 chr3 209733724 209733821 -17790757 - MIR SINE MIR -95 167 72 1468 170 110 31 chr3 209734224 209734542 -17790036 - MER2 DNA MER2_type -1 343 1 1663 161 7 10 chr3 209735180 209735471 -17789107 + AluJb SINE Alu 1 290 -22 198 254 297 6 chr3 209736837 209736930 -17787648 - L2 LINE L2 -962 2352 2287 2233 105 0 3 chr3 209736930 209737243 -17787335 + AluSx SINE Alu 1 312 0 198 254 297 6 chr3 209737243 209737314 -17787264 - L2 LINE L2 -1027 2287 2140 856 118 0 16 chr3 209739148 209739275 -17785303 - FLAM_C SINE Alu -5 128 4 264 240 0 0 chr3 209739794 209739844 -17784734 + C-rich Low_complexity Low_complexity 1 50 0 468 213 6 39 chr3 209739893 209740212 -17784366 + C-rich Low_complexity Low_complexity 1 308 0 428 196 23 35 chr3 209740272 209740445 -17784133 + C-rich Low_complexity Low_complexity 4 174 0 1368 265 79 36 chr3 209740569 209741081 -17783497 - L1MEc LINE L1 -4052 2344 1796 372 43 0 0 chr3 209741081 209741127 -17783451 + (TG)n Simple_repeat Simple_repeat 2 47 0 1368 265 79 36 chr3 209741127 209741275 -17783303 - L1MEc LINE L1 -4600 1796 1656 773 152 8 8 chr3 209741278 209741410 -17783168 - FLAM_C SINE Alu -1 132 1 284 179 13 0 chr3 209741580 209741658 -17782920 + (CA)n Simple_repeat Simple_repeat 2 80 0 198 261 46 31 chr3 209742104 209742169 -17782409 + MIR SINE MIR 50 115 -147 457 314 63 36 chr3 209742225 209742448 -17782130 - MIR SINE MIR -31 231 3 212 208 19 19 chr3 209742708 209742761 -17781817 - MIR3 SINE MIR -11 197 145 2295 98 0 0 chr3 209742852 209743158 -17781420 + AluSc SINE Alu 1 306 -3 2049 103 0 3 chr3 209743801 209744111 -17780467 - AluSx SINE Alu 0 309 1 2144 114 0 0 chr3 209744905 209745203 -17779375 + AluSg SINE Alu 1 298 -12 663 207 178 28 chr3 209745208 209745421 -17779157 + L1MD2 LINE L1 6113 6357 -2 281 273 40 30 chr3 209745447 209745546 -17779032 + MIR SINE MIR 92 191 -71 26 0 0 0 chr3 209748008 209748034 -17776544 + AT_rich Low_complexity Low_complexity 1 26 0 401 265 86 30 chr3 209748100 209748277 -17776301 - MIR SINE MIR -35 227 40 399 276 79 13 chr3 209748345 209748497 -17776081 + MIR SINE MIR 95 256 -6 334 314 27 80 chr3 209748843 209748967 -17775611 - MER5A DNA MER1_type 0 189 77 2077 114 3 3 chr3 209748967 209749264 -17775314 - AluSq SINE Alu -14 299 3 334 314 27 80 chr3 209749264 209749327 -17775251 - MER5A DNA MER1_type -112 77 12 266 264 71 114 chr3 209749803 209749864 -17774714 - L2 LINE L2 -214 3058 2996 2206 103 0 0 chr3 209749864 209750165 -17774413 + AluSx SINE Alu 1 301 -11 266 264 71 114 chr3 209750165 209750243 -17774335 - L2 LINE L2 -276 2996 2925 1739 81 4 4 chr3 209751270 209751506 -17773072 + AluSc SINE Alu 63 298 -11 186 43 0 0 chr3 209751506 209751529 -17773049 + (TA)n Simple_repeat Simple_repeat 2 24 0 * 189 0 0 0 chr3 209751528 209751549 -17773029 + (CA)n Simple_repeat Simple_repeat 2 22 0 1666 83 25 0 chr3 209751549 209751790 -17772788 + L1MA3 LINE L1 6059 6305 0 27 29 0 0 chr3 209751790 209751824 -17772754 + AT_rich Low_complexity Low_complexity 1 34 0 941 135 119 98 chr3 209752483 209752727 -17771851 - AluJo SINE Alu -7 305 57 368 253 185 31 chr3 209752973 209753135 -17771443 - MIR SINE MIR 0 262 76 2348 69 3 3 chr3 209753344 209753647 -17770931 - AluSq SINE Alu -10 303 1 265 347 64 8 chr3 209753663 209753818 -17770760 - MIR SINE MIR -41 167 8 2446 75 0 0 chr3 209754814 209755121 -17769457 + AluSg SINE Alu 1 307 -3 262 315 14 0 chr3 209755204 209755277 -17769301 - MIR3 SINE MIR -17 191 118 551 266 5 94 chr3 209756774 209756837 -17767741 - L3 LINE CR1 -1 1576 1509 2101 101 10 0 chr3 209756837 209757125 -17767453 - AluSg SINE Alu -15 295 5 551 266 5 94 chr3 209757125 209757253 -17767325 - L3 LINE CR1 -68 1509 1402 228 167 0 62 chr3 209757308 209757356 -17767222 + Cheshire DNA MER1_type 721 765 -1655 180 342 13 0 chr3 209757383 209757462 -17767116 + L2 LINE L2 3005 3084 -229 323 326 171 0 chr3 209757615 209757744 -17766834 + L2 LINE L2 3122 3272 0 226 351 0 0 chr3 209757757 209757831 -17766747 + MIR SINE MIR 139 212 -50 2005 120 0 3 chr3 209757997 209758313 -17766265 + AluSq SINE Alu 1 315 0 423 322 73 30 chr3 209758577 209758810 -17765768 - MIR SINE MIR 0 262 20 180 0 0 0 chr3 209760405 209760425 -17764153 + (CACCC)n Simple_repeat Simple_repeat 3 22 0 1726 172 20 0 chr3 209760821 209761123 -17763455 - AluJb SINE Alu -4 308 1 332 306 75 37 chr3 209761184 209761392 -17763186 - L2 LINE L2 -268 3004 2790 880 271 48 73 chr3 209761581 209762101 -17762477 + MLT1J LTR MaLR 1 507 -4 199 373 13 0 chr3 209762111 209762186 -17762392 - MIR SINE MIR -57 151 76 691 223 10 82 chr3 209762282 209762328 -17762250 + MIR SINE MIR 5 53 -209 778 160 15 0 chr3 209762328 209762459 -17762119 - FLAM_C SINE Alu 0 133 1 691 223 10 82 chr3 209762459 209762618 -17761960 + MIR SINE MIR 53 195 -67 732 248 143 13 chr3 209762636 209762866 -17761712 + MIR SINE MIR 3 262 0 463 298 42 6 chr3 209762990 209763158 -17761420 - MIR SINE MIR -41 221 48 2146 105 16 0 chr3 209763313 209763619 -17760959 - AluSq SINE Alu -2 311 1 1256 80 0 6 chr3 209764348 209764510 -17760068 - AluSq SINE Alu -152 161 1 210 111 89 67 chr3 209764652 209764697 -17759881 + L2 LINE L2 3267 3312 -1 216 338 79 29 chr3 209765083 209765222 -17759356 - L3b LINE CR1 -132 1451 1306 579 331 25 0 chr3 209765876 209766039 -17758539 + MIR3 SINE MIR 42 208 0 15629 125 20 16 chr3 209766151 209767587 -17756991 - Tigger1 DNA MER2_type 0 2418 989 2366 68 7 3 chr3 209767587 209767896 -17756682 - AluSq SINE Alu -3 310 1 15629 125 20 16 chr3 209767896 209768659 -17755919 - Tigger1 DNA MER2_type -1429 989 207 2395 96 0 0 chr3 209768659 209768971 -17755607 + AluSx SINE Alu 1 312 0 15629 125 20 16 chr3 209768971 209769179 -17755399 - Tigger1 DNA MER2_type -2211 207 1 1603 196 51 24 chr3 209769330 209769661 -17754917 - MLT1A1 LTR MaLR -21 344 5 794 210 72 6 chr3 209769829 209770010 -17754568 - MER20 DNA MER1_type 0 219 27 2341 66 0 7 chr3 209770836 209771138 -17753440 - AluSg SINE Alu -10 300 1 2009 56 48 0 chr3 209771149 209771461 -17753117 - AluSc SINE Alu 0 325 1 232 229 0 0 chr3 209771732 209771780 -17752798 + MIR SINE MIR 106 153 -109 180 152 0 0 chr3 209771796 209771829 -17752749 + T-rich Low_complexity Low_complexity 1 33 0 2054 105 26 3 chr3 209771831 209772136 -17752442 - AluSx SINE Alu 0 312 1 1689 153 17 3 chr3 209772188 209772483 -17752095 - AluJb SINE Alu -13 299 1 497 296 136 25 chr3 209772882 209773081 -17751497 - MIR SINE MIR -28 234 14 2306 68 3 3 chr3 209773083 209773390 -17751188 + AluY SINE Alu 1 307 -4 442 197 0 0 chr3 209773394 209773465 -17751113 - MER21B LTR ERV1 -774 89 19 361 194 46 65 chr3 209773463 209773571 -17751007 - MER21B LTR ERV1 -757 106 1 * 1719 182 0 3 chr3 209773602 209773910 -17750668 + AluJb SINE Alu 6 312 0 1233 241 50 45 chr3 209773914 209774299 -17750279 - L1MEc LINE L1 -2748 4193 3847 2216 78 0 0 chr3 209774299 209774580 -17749998 + AluSq SINE Alu 28 308 -5 1233 241 50 45 chr3 209774580 209774912 -17749666 - L1MEc LINE L1 -3094 3847 3518 1634 146 75 45 chr3 209774919 209775039 -17749539 - MLT1B LTR MaLR -3 387 272 2223 119 0 0 chr3 209775039 209775351 -17749227 - AluSx SINE Alu 0 312 1 1634 146 75 45 chr3 209775351 209775565 -17749013 - MLT1B LTR MaLR -118 272 43 2546 86 14 25 chr3 209775565 209775924 -17748654 - THE1A LTR MaLR 0 355 1 10467 81 107 1 chr3 209775924 209777352 -17747226 - THE1A-int LTR MaLR 0 1580 1 3035 48 3 0 chr3 209777352 209777706 -17746872 - THE1A LTR MaLR 0 355 1 333 109 0 0 chr3 209777707 209777753 -17746825 - MLT1B LTR MaLR -421 46 1 458 194 0 65 chr3 209777754 209777859 -17746719 - L1MEc LINE L1 -3420 3521 3424 3178 204 24 81 chr3 209777859 209778886 -17745692 + LTR5 LTR ERVK 1 969 0 458 194 0 65 chr3 209778886 209778904 -17745674 - L1MEc LINE L1 -3517 3424 3406 1107 199 40 0 chr3 209778917 209779118 -17745460 + Tigger5 DNA MER2_type 12 220 -2103 * 1347 153 5 0 chr3 209779114 209779330 -17745248 + Tigger5 DNA MER2_type 2058 2274 -49 315 211 0 0 chr3 209779323 209779375 -17745203 - AluJ SINE Alu -117 185 134 * 664 221 25 0 chr3 209779375 209779497 -17745081 - AluJ SINE Alu -177 125 1 361 278 79 16 chr3 209779498 209779624 -17744954 - L1MEc LINE L1 -4463 2659 2526 325 293 45 41 chr3 209779578 209779971 -17744607 + L1MC4 LINE L1 2120 6703 -1339 * 259 227 76 0 chr3 209779975 209780041 -17744537 - L1MEc LINE L1 -4565 2557 2487 557 277 151 34 chr3 209780042 209780334 -17744244 - L1MEc LINE L1 -5244 1179 854 985 101 7 0 chr3 209780652 209780790 -17743788 + AluSc SINE Alu 154 292 -17 288 0 0 0 chr3 209781902 209781934 -17742644 + (CA)n Simple_repeat Simple_repeat 2 33 0 6972 23 0 0 chr3 209782033 209782819 -17741759 - L1PA3 LINE L1 -3 6152 5367 598 56 0 0 chr3 209782819 209782891 -17741687 - U3 snRNA snRNA -145 72 1 427 303 113 13 chr3 209783542 209783780 -17740798 + L2 LINE L2 2906 3167 -105 516 16 0 0 chr3 209783873 209783934 -17740644 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 777 239 186 14 chr3 209784588 209785046 -17739532 + LTR50 LTR ERVL 236 793 -2 1937 105 77 0 chr3 209785078 209785188 -17739390 + AluSq SINE Alu 1 101 -212 1551 97 0 60 chr3 209785188 209785436 -17739142 + AluY SINE Alu 67 299 -12 1937 105 77 0 chr3 209785436 209785611 -17738967 + AluSq SINE Alu 101 308 -5 2296 35 7 14 chr3 209786091 209786401 -17738177 + AluY SINE Alu 1 308 0 707 181 40 102 chr3 209786807 209787033 -17737545 + MER20 DNA MER1_type 2 213 -6 211 333 11 11 chr3 209788365 209788458 -17736120 + CT-rich Low_complexity Low_complexity 6 98 0 200 284 236 0 chr3 209788639 209788766 -17735812 - MIR SINE MIR -16 246 90 208 242 42 42 chr3 209790650 209790745 -17733833 - MIR3 SINE MIR -7 201 107 1901 131 10 3 chr3 209790901 209791199 -17733379 - AluJb SINE Alu -12 300 1 258 32 0 0 chr3 209791761 209791792 -17732786 + (TG)n Simple_repeat Simple_repeat 2 32 0 194 270 284 0 chr3 209792318 209792392 -17732186 - L2 LINE L2 -44 3228 3134 198 0 0 0 chr3 209792640 209792662 -17731916 + (CA)n Simple_repeat Simple_repeat 2 23 0 2130 129 0 0 chr3 209793703 209794006 -17730572 - AluSx SINE Alu -9 303 1 336 227 97 41 chr3 209794320 209795166 -17729412 + L1MC4 LINE L1 6572 7368 -674 2272 98 0 16 chr3 209795166 209795482 -17729096 + AluSq SINE Alu 1 311 -2 1671 157 3 43 chr3 209795483 209795808 -17728770 + AluJb SINE Alu 1 312 0 336 227 97 41 chr3 209795808 209795891 -17728687 + L1MC4 LINE L1 7367 7670 -372 198 80 70 60 chr3 209795979 209796079 -17728499 + (CATATA)n Simple_repeat Simple_repeat 4 104 0 1431 177 7 141 chr3 209796089 209796244 -17728334 + MLT1A1 LTR MaLR 1 175 -190 1687 166 30 7 chr3 209796244 209796540 -17728038 + AluJo SINE Alu 1 303 -9 1431 177 7 141 chr3 209796540 209796802 -17727776 + MLT1A1 LTR MaLR 175 362 -3 434 144 6 143 chr3 209796890 209797049 -17727529 + L1MC4 LINE L1 7902 8040 -2 1268 209 77 66 chr3 209797135 209797224 -17727354 - L1ME2 LINE L1 -32 6132 6046 2173 94 3 27 chr3 209797224 209797523 -17727055 + AluSq SINE Alu 1 292 -21 180 0 0 0 chr3 209797523 209797543 -17727035 + (TA)n Simple_repeat Simple_repeat 2 21 0 1268 209 77 66 chr3 209797543 209797933 -17726645 - L1ME2 LINE L1 -118 6046 5584 2397 97 13 0 chr3 209797933 209798241 -17726337 + AluSx SINE Alu 1 312 0 1268 209 77 66 chr3 209798241 209798276 -17726302 - L1ME2 LINE L1 -580 5584 5551 567 277 90 36 chr3 209798286 209798618 -17725960 - L1MC/D LINE L1 -1993 5815 5466 2413 107 0 0 chr3 209798828 209799136 -17725442 + AluSp SINE Alu 6 313 0 239 296 48 16 chr3 209799299 209799424 -17725154 + L2 LINE L2 2919 3047 -225 205 250 0 0 chr3 209799720 209799768 -17724810 - MIR3 SINE MIR -18 190 143 306 292 81 25 chr3 209799806 209799967 -17724611 - L1ME4a LINE L1 -4 6117 5948 659 222 195 9 chr3 209799989 209800210 -17724368 - L1ME4a LINE L1 -224 5897 5636 281 351 0 18 chr3 209800439 209800553 -17724025 - MER5B DNA MER1_type -66 112 1 2268 104 0 0 chr3 209801319 209801606 -17722972 + AluSx SINE Alu 1 287 -25 990 298 75 0 chr3 209801633 209801952 -17722626 - LTR16C LTR ERVL 0 491 149 287 349 71 0 chr3 209802955 209803081 -17721497 + MIR SINE MIR 20 154 -108 657 247 13 84 chr3 209803093 209803279 -17721299 + MIR SINE MIR 15 182 -80 465 19 0 0 chr3 209803279 209803333 -17721245 + (TG)n Simple_repeat Simple_repeat 1 54 0 657 247 13 84 chr3 209803333 209803385 -17721193 + MIR SINE MIR 182 236 -26 259 295 19 9 chr3 209803660 209803765 -17720813 + L1MEc LINE L1 1606 1711 -4685 2207 114 7 0 chr3 209804030 209804327 -17720251 - AluSx SINE Alu -13 299 1 1165 194 9 5 chr3 209804547 209804758 -17719820 + AluJo SINE Alu 1 212 -100 586 246 221 4 chr3 209804833 209805114 -17719464 + L1MEc LINE L1 1953 2294 -4102 24148 83 8 4 chr3 209805115 209809237 -17715341 + L1PA7 LINE L1 2018 6154 0 1555 259 98 4 chr3 209809268 209809816 -17714762 + L1MEc LINE L1 2290 2889 -3326 851 260 27 30 chr3 209809813 209810144 -17714434 - L1M4 LINE L1 -2966 3180 2851 * 223 262 172 16 chr3 209810322 209810444 -17714134 - MIR SINE MIR -111 151 11 211 324 103 35 chr3 209811108 209811253 -17713325 - MIR SINE MIR -25 237 83 2446 58 0 0 chr3 209811281 209811576 -17713002 + AluY SINE Alu 1 295 -16 417 66 0 0 chr3 209811849 209811910 -17712668 + (TA)n Simple_repeat Simple_repeat 1 61 0 357 152 11 152 chr3 209811912 209812004 -17712574 - FRAM/FAM SINE Alu -96 79 1 278 265 29 0 chr3 209812118 209812186 -17712392 + MER81 DNA DNA 1 70 -44 2402 87 0 10 chr3 209812497 209812807 -17711771 - AluSc SINE Alu -2 307 1 229 250 148 70 chr3 209812989 209813117 -17711461 - MIR SINE MIR -36 226 89 1412 205 10 53 chr3 209813857 209814033 -17710545 - AluJo SINE Alu -22 290 131 2191 104 0 7 chr3 209814033 209814322 -17710256 + AluSq SINE Alu 1 287 -26 1412 205 10 53 chr3 209814322 209814448 -17710130 - AluJo SINE Alu -181 131 1 291 210 126 25 chr3 209814481 209814600 -17709978 + L1ME4a LINE L1 5991 6121 0 2377 91 3 0 chr3 209815049 209815357 -17709221 - AluSc SINE Alu 0 309 1 455 308 106 27 chr3 209815832 209816274 -17708304 - HERV16 LTR ERVL -781 4983 4507 1913 136 10 10 chr3 209816276 209816570 -17708008 + AluSq SINE Alu 1 294 -19 323 362 20 30 chr3 209816639 209816838 -17707740 - HERV16 LTR ERVL -1379 4275 4079 342 301 0 29 chr3 209816940 209817043 -17707535 - HERV16 LTR ERVL -4183 813 714 877 277 70 58 chr3 209817408 209817990 -17706588 - HERV16 LTR ERVL -4407 589 1 1181 238 85 48 chr3 209817991 209818428 -17706150 - LTR16A1 LTR ERVL -1 456 4 2174 92 38 3 chr3 209818473 209818766 -17705812 - AluSq SINE Alu -10 303 1 1473 155 0 16 chr3 209818766 209819024 -17705554 - L1MC1 LINE L1 -10 6323 6070 3835 163 40 29 chr3 209819024 209819414 -17705164 - MER44D DNA MER2_type -1882 605 221 2183 62 0 33 chr3 209819414 209819728 -17704850 - AluY SINE Alu 0 320 16 2281 102 7 0 chr3 209819730 209820033 -17704545 - AluSx SINE Alu -7 305 1 3835 163 40 29 chr3 209820033 209820363 -17704215 - MER44D DNA MER2_type -2266 221 1 2271 84 3 0 chr3 209820942 209821227 -17703351 - AluY SINE Alu -2 309 24 290 266 60 49 chr3 209821511 209821695 -17702883 - L2 LINE L2 0 3313 3128 23 0 0 0 chr3 209822347 209822370 -17702208 + AT_rich Low_complexity Low_complexity 1 23 0 2020 114 10 14 chr3 209822393 209822683 -17701895 - AluJb SINE Alu -21 291 3 3719 194 67 22 chr3 209824620 209825055 -17699523 + L1ME1 LINE L1 4525 4939 -1227 207 0 0 0 chr3 209825055 209825078 -17699500 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 3719 194 67 22 chr3 209825078 209826212 -17698366 + L1ME1 LINE L1 4939 6161 -5 1989 148 0 0 chr3 209826488 209826766 -17697812 + AluSx SINE Alu 7 284 -28 2263 90 7 0 chr3 209827020 209827308 -17697270 + AluSc SINE Alu 1 290 -19 1217 103 0 0 chr3 209827311 209827467 -17697111 + AluSg/x SINE Alu 136 291 -21 933 260 71 26 chr3 209827485 209827835 -17696743 + LTR16B LTR ERVL 96 461 -3 941 341 62 28 chr3 209827840 209828287 -17696291 + HERV16 LTR ERVL 3 490 -4506 1908 153 0 3 chr3 209828287 209828587 -17695991 + AluJo SINE Alu 1 299 -13 941 341 62 28 chr3 209828587 209828936 -17695642 + HERV16 LTR ERVL 490 826 -4170 420 166 262 69 chr3 209829466 209829623 -17694955 + MER51A LTR ERV1 184 309 -331 2407 84 0 7 chr3 209829623 209829921 -17694657 - AluSq SINE Alu -16 297 2 420 166 262 69 chr3 209829921 209829949 -17694629 + MER51A LTR ERV1 309 640 0 1015 318 60 16 chr3 209829949 209830383 -17694195 + HERV16 LTR ERVL 826 1278 -3718 701 285 13 26 chr3 209830591 209830819 -17693759 + HERV16 LTR ERVL 1589 1813 -3183 784 163 70 47 chr3 209830869 209831041 -17693537 - MER21B LTR ERV1 -19 844 669 3626 67 100 2 chr3 209831041 209831549 -17693029 - LTR6B LTR ERV1 0 558 1 961 154 30 0 chr3 209831720 209831889 -17692689 + L1MA7 LINE L1 6115 6288 -3 899 311 66 51 chr3 209831993 209832678 -17691900 + L2 LINE L2 1906 2600 -714 1360 149 0 5 chr3 209832678 209832879 -17691699 - AluJb SINE Alu -21 291 92 248 292 28 84 chr3 209832913 209833091 -17691487 + L2 LINE L2 2571 2738 -576 1620 201 3 7 chr3 209833417 209833705 -17690873 - AluJo SINE Alu -25 287 1 5224 123 11 39 chr3 209833731 209834949 -17689629 + L1MA3 LINE L1 4863 6063 -242 1637 80 0 24 chr3 209834949 209835162 -17689416 + AluSc SINE Alu 1 208 -101 1619 114 21 8 chr3 209835263 209835500 -17689078 + Tigger3(Golem) DNA MER2_type 2789 3028 -1 2139 92 3 33 chr3 209835548 209835854 -17688724 + AluSg1 SINE Alu 1 297 -12 1807 163 10 13 chr3 209836041 209836341 -17688237 + AluJo SINE Alu 1 299 -13 2350 76 3 10 chr3 209837118 209837421 -17687157 - AluSp SINE Alu -12 301 1 300 63 25 0 chr3 209837799 209837845 -17686733 + AluSg/x SINE Alu 66 106 -194 4262 130 176 32 chr3 209837845 209838862 -17685716 + pTR5 LTR ERV1 743 2037 -401 343 221 12 0 chr3 209838862 209838948 -17685630 + LTR30 LTR ERV1 556 642 -80 1358 114 23 23 chr3 209838952 209839172 -17685406 + pTR5 LTR ERV1 173 392 -2046 1423 139 0 5 chr3 209839172 209839381 -17685197 + AluSg/x SINE Alu 105 312 0 21 0 0 0 chr3 209839381 209839402 -17685176 + AT_rich Low_complexity Low_complexity 1 21 0 411 227 13 0 chr3 209839533 209839608 -17684970 - Tigger3(Golem) DNA MER2_type -2948 81 6 3574 70 4 8 chr3 209839655 209840123 -17684455 - MER41A LTR ERV1 -88 466 1 12875 100 17 28 chr3 209840123 209841655 -17682923 - MER41A-int LTR ERV1 -2 5944 4396 2097 118 7 0 chr3 209841655 209841934 -17682644 + AluSx SINE Alu 5 285 -27 12875 100 17 28 chr3 209841934 209842668 -17681910 - MER41A-int LTR ERV1 -1550 4396 3655 221 0 35 0 chr3 209842668 209842697 -17681881 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 12875 100 17 28 chr3 209842697 209842739 -17681839 - MER41A-int LTR ERV1 -2291 3655 2857 2412 133 27 29 chr3 209842727 209843304 -17681274 - MER41B-int LTR ERV1 -4057 3759 1702 * 842 176 7 13 chr3 209843293 209843446 -17681132 - MER41B-int LTR ERV1 -5311 635 484 * 3305 109 40 2 chr3 209843981 209844456 -17680122 - MER41B-int LTR ERV1 -5453 493 1 655 110 0 0 chr3 209844525 209844616 -17679962 - MER41B LTR ERV1 0 635 545 241 250 92 33 chr3 209844716 209844836 -17679742 + L1ME4a LINE L1 5970 6096 -25 245 171 14 43 chr3 209844919 209844989 -17679589 + L1ME4a LINE L1 6051 6118 -3 257 228 114 70 chr3 209845089 209845247 -17679331 - MIR SINE MIR -49 213 49 2291 98 0 3 chr3 209845695 209845991 -17678587 - AluY SINE Alu -11 300 6 839 144 0 65 chr3 209846620 209846773 -17677805 + FLAM_C SINE Alu 1 143 0 2361 92 0 3 chr3 209846792 209847097 -17677481 + AluY SINE Alu 2 305 -6 513 285 36 76 chr3 209847247 209847496 -17677082 - MIR SINE MIR -1 261 23 2232 99 0 7 chr3 209848261 209848563 -17676015 - AluSx SINE Alu -12 300 1 27 0 0 0 chr3 209848860 209848887 -17675691 + AT_rich Low_complexity Low_complexity 1 27 0 616 171 0 32 chr3 209849192 209849315 -17675263 - MER95 LTR ERV -311 120 2 927 142 47 104 chr3 209849317 209849529 -17675049 - L1MC4 LINE L1 -527 7515 7316 5973 110 29 5 chr3 209849987 209850032 -17674546 - L1PA16 LINE L1 -13 6153 6111 2354 96 0 3 chr3 209850032 209850346 -17674232 - AluSq SINE Alu 0 313 1 5973 110 29 5 chr3 209850346 209851435 -17673143 - L1PA16 LINE L1 -55 6111 5018 2433 77 0 3 chr3 209851448 209851748 -17672830 - AluY SINE Alu -12 299 1 1752 201 0 0 chr3 209851748 209852077 -17672501 - L1P LINE L1 -1048 5098 4770 404 417 18 6 chr3 209852128 209852296 -17672282 - MER91A DNA MER1_type 0 196 27 228 167 0 0 chr3 209852309 209852345 -17672233 + MIR SINE MIR 160 195 -67 2356 98 0 0 chr3 209852357 209852654 -17671924 - AluSx SINE Alu -15 297 1 843 178 108 32 chr3 209853271 209853456 -17671122 - MLT1L LTR MaLR -1 614 416 611 258 22 11 chr3 209853589 209853767 -17670811 - L1MC5 LINE L1 -63 7898 7719 272 180 66 0 chr3 209853783 209853844 -17670734 + MER21B LTR ERV1 409 473 -390 841 175 9 99 chr3 209853847 209853998 -17670580 + AluJ SINE Alu 1 129 -183 2410 77 0 0 chr3 209853998 209854295 -17670283 + AluSc SINE Alu 1 297 -12 841 175 9 99 chr3 209854295 209854354 -17670224 + AluJ SINE Alu 129 192 -120 2374 40 11 0 chr3 209854354 209854631 -17669947 + L1PA5 LINE L1 5874 6153 -1 708 217 0 0 chr3 209854651 209854771 -17669807 + AluJ SINE Alu 177 296 -16 1534 164 36 11 chr3 209854896 209855170 -17669408 + AluJb SINE Alu 14 294 -18 231 36 0 0 chr3 209855281 209855309 -17669269 + (TGAA)n Simple_repeat Simple_repeat 2 29 0 244 257 0 0 chr3 209855344 209855414 -17669164 + L1M4 LINE L1 5095 5164 -982 1700 169 0 46 chr3 209855619 209855926 -17668652 + AluJo SINE Alu 1 293 -19 2144 108 3 10 chr3 209856312 209856609 -17667969 + AluSx SINE Alu 2 296 -16 2598 169 200 36 chr3 209856745 209857521 -17667057 - L1MCa LINE L1 -4403 2161 1259 3054 35 0 3 chr3 209857865 209858211 -17666367 - L1PA5 LINE L1 -4 6150 5806 208 262 107 12 chr3 209858215 209858299 -17666279 - L2 LINE L2 -19 3294 3203 687 133 52 59 chr3 209858299 209858434 -17666144 - MLT1A1 LTR MaLR -231 134 1 2103 228 77 43 chr3 209858437 209859087 -17665491 - L1MCa LINE L1 -5371 674 3 2865 100 8 0 chr3 209859136 209859496 -17665082 + THE1B LTR MaLR 2 364 0 2307 99 3 13 chr3 209859628 209859941 -17664637 - AluSx SINE Alu -2 310 1 1632 85 0 0 chr3 209860278 209860477 -17664101 - AluY SINE Alu -20 291 93 4218 134 112 123 chr3 209860579 209861876 -17662702 - pTR5 LTR ERV1 -95 2343 741 302 285 38 19 chr3 209861913 209862071 -17662507 - L1M4 LINE L1 -2394 3752 3592 194 276 13 53 chr3 209863607 209863683 -17660895 - MIR SINE MIR -141 121 49 653 249 138 9 chr3 209864021 209864238 -17660340 + MIR SINE MIR 6 250 -12 2311 68 0 46 chr3 209864360 209864685 -17659893 + AluY SINE Alu 1 310 -1 1571 184 30 43 chr3 209864885 209865190 -17659388 + AluJo SINE Alu 2 302 0 848 11 0 0 chr3 209865326 209865418 -17659160 - AluYb8 SINE Alu -14 304 213 239 234 0 0 chr3 209865537 209865584 -17658994 + CT-rich Low_complexity Low_complexity 2 48 0 2389 109 0 0 chr3 209866224 209866535 -17658043 - AluSx SINE Alu -1 311 1 216 337 34 34 chr3 209866743 209866832 -17657746 - MIR3 SINE MIR -5 203 115 570 194 11 40 chr3 209866845 209867041 -17657537 + MER106B DNA MER1_type 3 236 0 213 347 51 10 chr3 209867043 209867141 -17657437 - MIR3 SINE MIR -99 109 8 2459 84 0 0 chr3 209867276 209867587 -17656991 - AluY SINE Alu 0 311 1 2333 90 3 6 chr3 209868240 209868552 -17656026 + AluSx SINE Alu 1 311 -1 680 279 65 32 chr3 209869149 209869396 -17655182 + MIR SINE MIR 8 262 0 2174 116 0 0 chr3 209869396 209869716 -17654862 + AluSq SINE Alu 1 320 0 265 297 14 0 chr3 209870396 209870470 -17654108 - MER5C DNA MER1_type -245 79 5 2044 108 13 45 chr3 209870515 209870829 -17653749 - AluY SINE Alu -7 304 1 412 238 50 20 chr3 209870830 209870980 -17653598 + MIR SINE MIR 47 199 -63 271 0 25 25 chr3 209870982 209871022 -17653556 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 607 115 0 0 chr3 209871028 209871106 -17653472 - AluSg/x SINE Alu -36 276 199 1015 73 52 22 chr3 209871207 209871343 -17653235 - AluY SINE Alu -171 140 1 373 235 209 0 chr3 209871503 209871618 -17652960 + L2 LINE L2 3134 3272 0 332 288 96 8 chr3 209872562 209872687 -17651891 - L2 LINE L2 -322 2991 2856 344 293 85 27 chr3 209872688 209872876 -17651702 - LTR33A LTR ERVL 0 523 325 298 220 216 24 chr3 209873004 209873136 -17651442 - LTR50 LTR ERVL -602 171 23 479 239 58 84 chr3 209873146 209873207 -17651371 - L2 LINE L2 -453 2861 2800 1747 146 7 4 chr3 209873207 209873482 -17651096 - AluJb SINE Alu -2 310 35 479 239 58 84 chr3 209873482 209873646 -17650932 - L2 LINE L2 -514 2800 2642 1469 172 114 0 chr3 209873952 209874225 -17650353 - AluJo SINE Alu -8 304 1 288 201 100 89 chr3 209874599 209874669 -17649909 + MER5A DNA MER1_type 4 72 -117 667 200 75 0 chr3 209874669 209874789 -17649789 + FLAM_A SINE Alu 1 129 -4 288 201 100 89 chr3 209874789 209874876 -17649702 + MER5A DNA MER1_type 72 163 -26 25 31 0 0 chr3 209875014 209875046 -17649532 + AT_rich Low_complexity Low_complexity 1 32 0 22 56 0 0 chr3 209875343 209875379 -17649199 + AT_rich Low_complexity Low_complexity 1 36 0 1561 168 7 43 chr3 209875865 209876168 -17648410 - AluJo SINE Alu -20 292 1 224 200 60 0 chr3 209876229 209876279 -17648299 - MER5B DNA MER1_type -9 169 117 590 258 17 39 chr3 209876284 209876462 -17648116 + L1ME3A LINE L1 5984 6157 -13 183 325 0 26 chr3 209876473 209876550 -17648028 - MER5B DNA MER1_type -98 80 6 4100 113 58 8 chr3 209876691 209877276 -17647302 - LTR18B LTR ERVL 0 614 1 2194 141 54 25 chr3 209877819 209878173 -17646405 + THE1B LTR MaLR 1 364 0 12742 84 8 1 chr3 209878175 209879741 -17644837 + THE1B-int LTR MaLR 3 1580 0 2585 119 5 24 chr3 209879741 209880112 -17644466 + THE1B LTR MaLR 1 364 0 2681 202 81 50 chr3 209880180 209880545 -17644033 + L1MB8 LINE L1 4339 4691 -1455 2141 115 0 3 chr3 209880545 209880831 -17643747 + AluSx SINE Alu 2 286 -26 2681 202 81 50 chr3 209880831 209881272 -17643306 + L1MB8 LINE L1 4691 5170 -976 4289 160 39 40 chr3 209881276 209882147 -17642431 + L1MB8 LINE L1 5308 6177 -1 2414 212 111 26 chr3 209882140 209882824 -17641754 + L1ME1 LINE L1 5423 6164 -2 * 6563 82 25 17 chr3 209882909 209883025 -17641553 + L1PA14 LINE L1 5215 5329 -832 2285 92 3 3 chr3 209883025 209883319 -17641259 + AluY SINE Alu 1 294 -17 6563 82 25 17 chr3 209883319 209884140 -17640438 + L1PA14 LINE L1 5329 6159 -2 4105 177 17 3 chr3 209884680 209885371 -17639207 + MER44D DNA MER2_type 1 573 -32 2450 167 97 21 chr3 209885644 209886172 -17638406 + L1MB4 LINE L1 5612 6179 -1 1574 175 13 45 chr3 209886555 209886696 -17637882 + AluJo SINE Alu 1 145 -167 1924 151 7 7 chr3 209886696 209886995 -17637583 + AluJo SINE Alu 1 299 -13 1574 175 13 45 chr3 209886995 209887162 -17637416 + AluJo SINE Alu 145 299 -13 1359 122 0 0 chr3 209887992 209888173 -17636405 - AluSq SINE Alu -132 181 1 2541 44 3 7 chr3 209888180 209888478 -17636100 - AluY SINE Alu -14 297 1 1300 151 9 14 chr3 209888481 209888693 -17635885 - Tigger3(Golem) DNA MER2_type -2818 211 1 588 184 35 103 chr3 209888931 209889105 -17635473 + MER112 DNA MER1_type 1 162 -98 6631 144 26 19 chr3 209889141 209890274 -17634304 - L1MC1 LINE L1 -6 6327 5181 2285 107 0 10 chr3 209890274 209890584 -17633994 - AluSx SINE Alu -5 307 1 6631 144 26 19 chr3 209890584 209890696 -17633882 - L1MC1 LINE L1 -1152 5181 5071 242 273 26 0 chr3 209890723 209890800 -17633778 - L1MCa LINE L1 -2620 3806 3728 851 127 22 30 chr3 209890800 209890934 -17633644 - FLAM_C SINE Alu 0 133 1 1423 178 0 4 chr3 209890937 209891168 -17633410 - AluJo SINE Alu -82 230 1 4114 214 49 20 chr3 209891170 209891404 -17633174 - L1MCa LINE L1 -2691 3735 3509 1870 112 4 11 chr3 209891404 209891671 -17632907 - AluSc SINE Alu 0 309 45 4114 214 49 20 chr3 209891671 209892870 -17631708 - L1MCa LINE L1 -2917 3509 2259 581 206 135 0 chr3 209892874 209893000 -17631578 + Tigger3(Golem) DNA MER2_type 1 143 -2886 540 129 59 0 chr3 209892996 209893081 -17631497 + Tigger3(Golem) DNA MER2_type 2771 2860 -169 * 5689 165 94 27 chr3 209893081 209894284 -17630294 - L1MCa LINE L1 -5112 1314 31 1417 111 0 11 chr3 209894305 209894494 -17630084 + AluSx SINE Alu 1 187 -125 1042 235 64 4 chr3 209894659 209894940 -17629638 + L1ME1 LINE L1 5864 6161 -5 2133 94 45 0 chr3 209895616 209895903 -17628675 + AluSq SINE Alu 1 300 -13 713 225 0 0 chr3 209895916 209896059 -17628519 + L1PA16 LINE L1 6005 6177 0 250 33 0 0 chr3 209896059 209896089 -17628489 + (CAA)n Simple_repeat Simple_repeat 1 180 0 214 239 90 0 chr3 209896493 209896560 -17628018 + MER5C DNA MER1_type 52 124 -200 238 162 0 0 chr3 209896604 209896641 -17627937 + MER5C DNA MER1_type 288 324 0 2194 93 11 0 chr3 209897708 209897988 -17626590 - AluSq SINE Alu -30 283 1 1157 48 41 0 chr3 209898017 209898162 -17626416 - L1P3 LINE L1 -416 5738 5588 357 247 91 25 chr3 209898169 209898323 -17626255 - MIR SINE MIR -1 261 8 22 35 0 0 chr3 209898850 209898879 -17625699 + AT_rich Low_complexity Low_complexity 1 29 0 883 234 74 16 chr3 209899895 209900139 -17624439 - MIR SINE MIR -4 258 1 210 37 0 0 chr3 209900239 209900266 -17624312 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1871 148 3 40 chr3 209900269 209900567 -17624011 - AluSx SINE Alu -25 287 1 2355 89 7 3 chr3 209900869 209901171 -17623407 - AluSq SINE Alu 0 313 11 247 283 17 0 chr3 209901179 209901239 -17623339 - MIR SINE MIR -60 148 88 702 291 146 26 chr3 209902564 209902949 -17621629 + L2 LINE L2 2871 3301 -12 231 88 0 0 chr3 209902950 209902984 -17621594 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 195 333 0 43 chr3 209903084 209903153 -17621425 - L3 LINE CR1 -12 1565 1500 1148 60 0 0 chr3 209904023 209904157 -17620421 + AluYb8 SINE Alu 1 134 -184 2226 108 0 7 chr3 209904157 209904463 -17620115 + AluSc SINE Alu 1 304 -5 443 319 35 77 chr3 209904710 209904911 -17619667 - L3 LINE CR1 -1 1576 1391 2259 31 8 0 chr3 209904911 209905165 -17619413 + L1PA5 LINE L1 5897 6152 -2 443 319 35 77 chr3 209905165 209905276 -17619302 - L3 LINE CR1 -186 1391 1277 1367 142 29 46 chr3 209905308 209905548 -17619030 + MER46A DNA MER2_type 1 236 0 2287 96 3 3 chr3 209905917 209906218 -17618360 + AluSx SINE Alu 1 301 -11 11056 110 165 70 chr3 209906780 209908249 -17616329 - Tigger1 DNA MER2_type -1 2417 569 747 165 26 0 chr3 209908249 209908387 -17616191 - FLAM_C SINE Alu 0 142 2 11056 110 165 70 chr3 209908387 209908988 -17615590 - Tigger1 DNA MER2_type -1849 569 26 1734 171 7 7 chr3 209909156 209909461 -17615117 + AluJb SINE Alu 5 309 -3 433 146 111 56 chr3 209910039 209910183 -17614395 - Charlie1 DNA MER1_type 0 2761 2610 4707 146 45 39 chr3 209910183 209911072 -17613506 - L1MB3 LINE L1 -11 6172 5279 1012 248 35 0 chr3 209911079 209911222 -17613356 - Charlie1 DNA MER1_type -2522 239 84 2223 118 3 0 chr3 209911222 209911526 -17613052 - AluSp SINE Alu -8 305 1 1012 248 35 0 chr3 209911526 209911612 -17612966 - Charlie1 DNA MER1_type -2677 84 2 436 313 53 15 chr3 209913812 209913943 -17610635 + MIR SINE MIR 4 139 -123 207 184 0 0 chr3 209913948 209913980 -17610598 + (TAA)n Simple_repeat Simple_repeat 1 33 0 1755 161 21 4 chr3 209913980 209914259 -17610319 + AluJo SINE Alu 6 289 -23 224 263 118 0 chr3 209914264 209914340 -17610238 + MIR SINE MIR 146 230 -32 2344 89 0 3 chr3 209914414 209914717 -17609861 - AluY SINE Alu -9 302 1 349 207 69 0 chr3 209914733 209914820 -17609758 - MIR SINE MIR -93 169 77 2012 138 3 0 chr3 209914849 209915145 -17609433 - AluJo SINE Alu -15 297 1 2189 161 16 19 chr3 209915835 209916201 -17608377 - MLT1A1 LTR MaLR 0 365 1 323 198 21 52 chr3 209918022 209918118 -17606460 - L1MA8 LINE L1 -25 6266 6174 394 231 13 0 chr3 209918731 209918809 -17605769 + Tigger5 DNA MER2_type 1 79 -2244 354 161 0 0 chr3 209918815 209918871 -17605707 + Tigger5 DNA MER2_type 2268 2323 0 342 247 140 0 chr3 209918871 209918964 -17605614 + MER5B DNA MER1_type 28 133 -45 2357 87 0 10 chr3 209918964 209919262 -17605316 + AluSx SINE Alu 1 295 -17 2327 108 0 13 chr3 209919268 209919582 -17604996 + AluSg SINE Alu 1 310 0 250 196 0 39 chr3 209919607 209919658 -17604920 - MER5B DNA MER1_type -127 51 3 25 0 0 0 chr3 209920632 209920657 -17603921 + AT_rich Low_complexity Low_complexity 1 25 0 1194 203 153 50 chr3 209920991 209921350 -17603228 + MSTD LTR MaLR 1 396 0 2326 97 3 0 chr3 209921430 209921730 -17602848 + AluSc SINE Alu 1 301 -8 265 113 97 32 chr3 209971943 209972005 -17552573 - L1PA13 LINE L1 -5 6158 6093 1088 81 0 37 chr3 209972006 209972167 -17552411 - AluSx SINE Alu 0 312 158 909 88 0 0 chr3 209972168 209972281 -17552297 - AluSx SINE Alu -194 118 6 4972 108 1 0 chr3 209972281 209972967 -17551611 - L1PA13 LINE L1 -71 6092 5406 307 136 198 0 chr3 209973134 209973215 -17551363 + L1MC2 LINE L1 6248 6344 0 1274 174 0 9 chr3 209973519 209973749 -17550829 - AluJo SINE Alu -1 311 84 1808 176 3 0 chr3 209973840 209974141 -17550437 - AluJo SINE Alu -10 302 1 383 268 67 77 chr3 209974324 209974439 -17550139 + L1ME LINE L1 5525 5640 -481 2391 39 0 11 chr3 209974439 209974759 -17549819 - AluY SINE Alu 0 317 1 383 268 67 77 chr3 209974759 209974851 -17549727 + L1ME LINE L1 5640 5731 -390 209 33 33 0 chr3 209974853 209974883 -17549695 + (TAAAA)n Simple_repeat Simple_repeat 1 31 0 874 250 18 32 chr3 209974883 209974995 -17549583 - L1M4 LINE L1 -833 5313 5201 2400 87 0 3 chr3 209974995 209975305 -17549273 - AluSc SINE Alu 0 309 1 874 250 18 32 chr3 209975305 209975532 -17549046 - L1M4 LINE L1 -945 5201 4979 971 122 162 15 chr3 209975537 209975734 -17548844 + MSTA LTR MaLR 1 226 -202 1164 93 19 0 chr3 209975836 209975998 -17548580 + AluSg/x SINE Alu 128 292 -18 357 247 0 12 chr3 209976015 209976100 -17548478 + MIR3 SINE MIR 124 207 -1 391 250 81 54 chr3 209976104 209976252 -17548326 - MIR3 SINE MIR 0 208 57 337 271 62 62 chr3 209976604 209976814 -17547764 - L2 LINE L2 -21 3292 3083 642 260 9 91 chr3 209977521 209977615 -17546963 + MIR SINE MIR 3 70 -192 1983 117 31 3 chr3 209977615 209977905 -17546673 - AluSq SINE Alu -15 298 1 642 260 9 91 chr3 209977905 209978029 -17546549 + MIR SINE MIR 70 203 -59 1875 124 0 11 chr3 209978395 209978661 -17545917 + AluSg SINE Alu 1 263 -47 23 33 0 0 chr3 209978943 209978973 -17545605 + AT_rich Low_complexity Low_complexity 1 30 0 2169 104 3 26 chr3 209979459 209979768 -17544810 + AluSg SINE Alu 1 302 -8 2392 70 0 0 chr3 209979772 209980058 -17544520 + AluY SINE Alu 1 286 -25 655 286 71 9 chr3 209980832 209981056 -17543522 - MIR SINE MIR -16 246 9 344 226 132 26 chr3 209981164 209981354 -17543224 + L1ME4a LINE L1 5687 5896 -225 292 235 59 33 chr3 209981371 209981524 -17543054 + L1ME4a LINE L1 5962 6118 -3 1179 23 0 0 chr3 209981777 209981906 -17542672 - L1PA5 LINE L1 -5 6149 6021 218 346 0 39 chr3 209981908 209981986 -17542592 + MIR SINE MIR 24 98 -164 2125 116 13 7 chr3 209982094 209982395 -17542183 - AluSq SINE Alu -10 303 1 520 255 94 0 chr3 209982395 209982544 -17542034 - MER21B LTR ERV1 -372 491 329 194 271 0 42 chr3 209982775 209982823 -17541755 - MIR3 SINE MIR -51 157 112 1415 339 3 45 chr3 209983475 209983788 -17540790 - AluSp SINE Alu -13 300 1 1050 83 0 0 chr3 209983788 209983921 -17540657 - AluSc SINE Alu -176 133 1 2654 214 179 31 chr3 209983932 209985509 -17539069 + L1ME2 LINE L1 4324 6155 -9 22 0 0 0 chr3 209985524 209985546 -17539032 + AT_rich Low_complexity Low_complexity 1 22 0 1558 150 0 26 chr3 209985702 209985969 -17538609 + AluJb SINE Alu 33 292 -20 1921 161 0 3 chr3 209987508 209987807 -17536771 - AluSx SINE Alu -6 306 9 493 116 0 0 chr3 209987980 209988049 -17536529 + MER41B LTR ERV1 567 635 0 2050 117 0 32 chr3 209988140 209988456 -17536122 - AluSc SINE Alu -2 307 2 519 198 0 9 chr3 209988914 209989020 -17535558 - MER69 DNA AcHobo 0 2526 2422 375 154 308 10 chr3 209989025 209989129 -17535449 - MER69 DNA AcHobo -1057 169 35 360 231 36 118 chr3 209989160 209989317 -17535261 + L1ME3A LINE L1 5977 6117 -53 2396 93 0 6 chr3 209989317 209989628 -17534950 - AluSq SINE Alu -4 309 1 360 231 36 118 chr3 209989628 209989665 -17534913 + L1ME3A LINE L1 6117 6155 -15 309 192 0 0 chr3 209989841 209989893 -17534685 + Alu SINE Alu 1 52 -251 2046 105 25 0 chr3 209989997 209990283 -17534295 - AluSq SINE Alu -20 293 1 1874 190 15 35 chr3 209990285 209990685 -17533893 - L1M4 LINE L1 -428 5746 5397 1982 133 20 0 chr3 209990685 209990986 -17533592 - AluY SINE Alu -3 308 2 1874 190 15 35 chr3 209990986 209991062 -17533516 - L1M4 LINE L1 -777 5397 5321 2470 88 0 3 chr3 209991064 209991372 -17533206 - AluSp SINE Alu -6 307 1 5040 154 42 17 chr3 209991378 209992048 -17532530 - L1MB2 LINE L1 0 6171 5459 201 74 0 0 chr3 209992048 209992075 -17532503 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 5040 154 42 17 chr3 209992075 209992504 -17532074 - L1MB2 LINE L1 -712 5459 5042 2339 102 0 16 chr3 209992507 209992821 -17531757 - AluSx SINE Alu -3 309 1 4376 190 89 10 chr3 209992829 209993861 -17530717 - L1MB2 LINE L1 -1443 4703 3590 1457 93 0 56 chr3 209993961 209994176 -17530402 - AluSc SINE Alu -106 203 1 2167 210 69 11 chr3 209994179 209994745 -17529833 - L1M4 LINE L1 -986 5160 4562 1332 305 86 54 chr3 209994989 209995620 -17528958 - L2 LINE L2 -4 3309 2639 1953 235 67 25 chr3 209995620 209996187 -17528391 + MLT1E LTR MaLR 1 591 -2 1332 305 86 54 chr3 209996187 209996309 -17528269 - L2 LINE L2 -674 2639 2522 180 0 0 0 chr3 209996874 209996894 -17527684 + (T)n Simple_repeat Simple_repeat 1 20 0 228 291 102 39 chr3 209996894 209997021 -17527557 - MIR3 SINE MIR -67 141 7 234 116 0 0 chr3 209997024 209997067 -17527511 + (T)n Simple_repeat Simple_repeat 1 43 0 2432 80 0 0 chr3 209997274 209997574 -17527004 + AluY SINE Alu 1 300 -11 2064 94 0 8 chr3 209998477 209998744 -17525834 - AluSx SINE Alu -11 301 37 2236 98 7 0 chr3 209998927 209999223 -17525355 - AluSq SINE Alu -15 298 1 1199 188 72 8 chr3 209999316 209999566 -17525012 + Tigger7 DNA MER2_type 1 266 -284 460 109 11 87 chr3 209999585 209999677 -17524901 + Tigger7 DNA MER2_type 2500 2584 -3 2223 89 3 7 chr3 209999698 209999991 -17524587 - AluSp SINE Alu -21 292 1 1341 179 141 0 chr3 209999993 210000255 -17524323 - AluJo SINE Alu -3 299 1 189 0 0 0 chr3 210000677 210000698 -17523880 + (A)n Simple_repeat Simple_repeat 1 21 0 249 184 61 0 chr3 210001052 210001101 -17523477 + L2 LINE L2 3210 3261 -11 228 294 46 18 chr3 210001879 210001988 -17522590 + L2 LINE L2 3161 3272 0 431 333 65 65 chr3 210003067 210003484 -17521094 + L1M2 LINE L1 822 1238 -5611 1219 186 64 34 chr3 210005161 210005457 -17519121 + AluJb SINE Alu 1 305 -7 1253 117 5 5 chr3 210005766 210005954 -17518624 - AluSq SINE Alu -1 312 125 402 225 50 0 chr3 210011082 210011162 -17513416 + L2 LINE L2 3189 3272 0 24 0 0 0 chr3 210013784 210013808 -17510770 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 210014500 210014521 -17510057 + AT_rich Low_complexity Low_complexity 1 21 0 217 143 119 0 chr3 210014825 210014867 -17509711 - MIR SINE MIR -26 236 190 24 0 0 0 chr3 210014974 210014998 -17509580 + AT_rich Low_complexity Low_complexity 1 24 0 465 304 120 28 chr3 210016500 210016717 -17507861 - MIR SINE MIR -11 251 15 1033 211 61 45 chr3 210017023 210017335 -17507243 + MER5C DNA MER1_type 1 317 -7 1804 155 17 14 chr3 210017558 210017854 -17506724 - AluJo SINE Alu -15 297 1 2073 131 3 25 chr3 210018052 210018366 -17506212 - AluSx SINE Alu -5 307 1 1662 158 50 20 chr3 210019653 210019956 -17504622 + AluSx SINE Alu 1 312 0 1982 104 0 21 chr3 210021026 210021306 -17503272 - AluY SINE Alu -1 310 37 25 75 0 0 chr3 210021865 210021918 -17502660 + AT_rich Low_complexity Low_complexity 1 53 0 3173 80 52 7 chr3 210022785 210023225 -17501353 + LTR46 LTR ERV1 1 460 0 424 227 199 14 chr3 210023308 210023449 -17501129 + MIR SINE MIR 96 262 0 1880 138 46 26 chr3 210023673 210023978 -17500600 - AluJb SINE Alu -1 311 1 594 239 103 47 chr3 210024105 210024318 -17500260 + MER69 DNA AcHobo 39 263 -2263 1592 80 5 0 chr3 210024329 210024529 -17500049 + AluSp SINE Alu 1 201 -112 5576 100 27 2 chr3 210024602 210025570 -17499008 + L1PB1 LINE L1 5119 6108 -43 23 0 0 0 chr3 210026516 210026539 -17498039 + AT_rich Low_complexity Low_complexity 1 23 0 1012 147 187 0 chr3 210028276 210028474 -17496104 + MER46A DNA MER2_type 1 235 -1 1738 117 78 75 chr3 210028500 210028670 -17495908 - AluSx SINE Alu -4 308 135 2105 92 34 14 chr3 210028670 210028965 -17495613 - AluSc SINE Alu -8 301 1 1738 117 78 75 chr3 210028965 210029101 -17495477 - AluSx SINE Alu -177 135 1 365 295 152 9 chr3 210029458 210029668 -17494910 - MIR SINE MIR 0 262 23 386 246 181 35 chr3 210030095 210030266 -17494312 - MIR SINE MIR -65 197 2 1915 131 11 0 chr3 210030415 210030689 -17493889 + AluSg SINE Alu 1 277 -33 671 175 0 17 chr3 210030800 210030920 -17493658 - FLAM_C SINE Alu -15 118 1 651 273 159 23 chr3 210030938 210031158 -17493420 - MIR SINE MIR -11 251 2 1523 165 25 63 chr3 210031912 210032228 -17492350 - AluJo SINE Alu -8 304 1 2223 105 3 0 chr3 210033301 210033595 -17490983 + AluSx SINE Alu 1 295 -17 952 114 0 0 chr3 210033992 210034124 -17490454 + FLAM_C SINE Alu 1 132 -1 268 282 24 48 chr3 210034843 210034967 -17489611 + MIR SINE MIR 32 152 -56 279 0 0 0 chr3 210035041 210035072 -17489506 + (TA)n Simple_repeat Simple_repeat 1 31 0 2200 116 0 0 chr3 210035073 210035376 -17489202 - AluSq SINE Alu -10 303 1 2391 114 0 0 chr3 210037262 210037569 -17487009 + AluSg SINE Alu 1 307 -3 188 283 0 0 chr3 210038652 210038698 -17485880 - MIR3 SINE MIR -3 205 160 451 248 128 7 chr3 210038891 210039032 -17485546 - MIR SINE MIR 0 262 105 1956 95 4 11 chr3 210039121 210039385 -17485193 + AluSp SINE Alu 1 262 -51 317 104 0 0 chr3 210039485 210039533 -17485045 + AluSp SINE Alu 241 288 -15 249 229 115 66 chr3 210039605 210039788 -17484790 - LTR50 LTR ERVL -125 670 479 473 226 195 0 chr3 210039909 210040068 -17484510 - LTR50 LTR ERVL -602 193 4 228 143 0 0 chr3 210041372 210041414 -17483164 + (TTCA)n Simple_repeat Simple_repeat 4 45 0 195 181 28 97 chr3 210042112 210042184 -17482394 - MIR SINE MIR -2 260 194 2002 151 91 10 chr3 210042199 210042616 -17481962 - MSTB2 LTR MaLR -6 451 1 375 164 0 0 chr3 210042724 210042785 -17481793 - MIR SINE MIR -110 152 92 216 0 0 0 chr3 210042802 210042826 -17481752 + (T)n Simple_repeat Simple_repeat 1 24 0 663 193 33 0 chr3 210043662 210043812 -17480766 + L1MB2 LINE L1 6014 6168 -3 1032 144 93 0 chr3 210043835 210044050 -17480528 + L1MC2 LINE L1 6101 6335 -9 1141 196 0 9 chr3 210044360 210044590 -17479988 - AluJo SINE Alu 0 312 85 1834 173 3 0 chr3 210044682 210044983 -17479595 - AluJo SINE Alu -10 302 1 767 340 157 27 chr3 210045005 210045643 -17478935 - L3 LINE CR1 -12 1565 845 455 272 21 78 chr3 210045724 210045915 -17478663 - MIR SINE MIR -62 200 21 2142 122 7 0 chr3 210046105 210046400 -17478178 + AluSx SINE Alu 3 299 -13 1297 126 5 5 chr3 210046449 210046640 -17477938 + AluSq SINE Alu 1 191 -122 1268 108 0 0 chr3 210047005 210047172 -17477406 + AluSp SINE Alu 131 297 -16 23 33 0 0 chr3 210047635 210047665 -17476913 + AT_rich Low_complexity Low_complexity 1 30 0 479 206 28 58 chr3 210047872 210048050 -17476528 - L1MD3 LINE L1 -12 8014 7877 675 269 134 10 chr3 210048591 210048792 -17475786 - MIR SINE MIR -30 232 7 357 346 23 8 chr3 210049060 210049193 -17475385 - L2 LINE L2 -255 3017 2883 238 373 77 21 chr3 210049211 210049444 -17475134 - L2 LINE L2 -540 2774 2529 348 296 142 49 chr3 210049651 210050199 -17474379 - L2 LINE L2 -925 2389 1791 2028 107 4 0 chr3 210050223 210050493 -17474085 + AluSp SINE Alu 4 274 -39 342 100 0 0 chr3 210050594 210050644 -17473934 + AluSc SINE Alu 240 289 -10 230 339 19 50 chr3 210050652 210050912 -17473666 - L2 LINE L2 -1630 1684 1433 1765 175 13 3 chr3 210051055 210051363 -17473215 - AluJo SINE Alu -1 311 1 2127 127 0 7 chr3 210051422 210051722 -17472856 - AluSx SINE Alu -14 298 1 2173 105 7 0 chr3 210051738 210052033 -17472545 - AluSq SINE Alu -16 297 1 1082 190 32 19 chr3 210052638 210052854 -17471724 + MER20 DNA MER1_type 1 219 0 1435 192 58 10 chr3 210053675 210053967 -17470611 - AluJo SINE Alu -6 306 1 2242 106 0 3 chr3 210054222 210054525 -17470053 - AluSg SINE Alu -8 302 1 721 48 48 0 chr3 210055180 210055306 -17469272 - AluY SINE Alu 0 305 175 192 97 0 0 chr3 210057536 210057567 -17467011 + (TA)n Simple_repeat Simple_repeat 2 32 0 198 0 0 0 chr3 210057664 210057686 -17466892 + (T)n Simple_repeat Simple_repeat 1 22 0 234 174 0 0 chr3 210058061 210058107 -17466471 + GA-rich Low_complexity Low_complexity 1 46 0 648 207 17 17 chr3 210059184 210059358 -17465220 + L1MC5 LINE L1 7609 7782 -179 1010 181 0 0 chr3 210059359 210059519 -17465059 + AluJb SINE Alu 133 292 -20 379 209 44 0 chr3 210059546 210059637 -17464941 + L1MC5 LINE L1 7805 7899 -62 590 284 49 33 chr3 210060029 210060212 -17464366 - MLT2F LTR ERVL -237 426 241 469 248 9 0 chr3 210060202 210060307 -17464271 - MLT2F LTR ERVL -523 140 35 * 2371 90 3 0 chr3 210060379 210060680 -17463898 + AluSq SINE Alu 1 302 -11 1655 163 4 0 chr3 210060745 210061009 -17463569 + AluJo SINE Alu 1 265 -47 15315 182 34 16 chr3 210061385 210064861 -17459717 + L1PA13 LINE L1 92 3503 -3294 1883 123 36 11 chr3 210064861 210065164 -17459414 + AluSx SINE Alu 1 310 0 15315 182 34 16 chr3 210065164 210065442 -17459136 + L1PA13 LINE L1 3503 3774 -3023 2167 120 3 0 chr3 210065442 210065741 -17458837 + AluSx SINE Alu 1 300 -12 15315 182 34 16 chr3 210065741 210066066 -17458512 + L1PA13 LINE L1 3774 4092 -2705 2350 95 0 0 chr3 210066066 210066372 -17458206 + AluSg SINE Alu 1 306 -4 15315 182 34 16 chr3 210066372 210067020 -17457558 + L1PA13 LINE L1 4092 4909 -1888 189 380 39 8 chr3 210067505 210067634 -17456944 + MIR SINE MIR 50 182 -80 2125 219 91 26 chr3 210069156 210069818 -17454760 - L1MB8 LINE L1 -22 6156 5452 709 269 85 0 chr3 210070391 210070674 -17453904 - L1MC5 LINE L1 -116 7845 7539 3939 174 86 15 chr3 210070916 210071785 -17452793 + L1MB7 LINE L1 5254 6184 0 1521 190 136 14 chr3 210072704 210073130 -17451448 - LTR54B LTR ERV1 -19 479 2 407 174 66 41 chr3 210073991 210074112 -17450466 - L1MB8 LINE L1 -842 5304 5181 1531 205 18 0 chr3 210074112 210074395 -17450183 - AluJo SINE Alu -21 291 4 3242 203 77 85 chr3 210074395 210074810 -17449768 - L1MB8 LINE L1 -1091 5055 4638 1976 159 0 0 chr3 210074810 210075099 -17449479 - AluSx SINE Alu -23 289 1 3242 203 77 85 chr3 210075099 210075220 -17449358 - L1MB8 LINE L1 -1508 4638 4517 981 202 69 0 chr3 210075220 210075423 -17449155 + MER20 DNA MER1_type 2 218 -1 3242 203 77 85 chr3 210075423 210075594 -17448984 - L1MB8 LINE L1 -1629 4517 4346 2346 92 0 3 chr3 210075594 210075898 -17448680 - AluSg SINE Alu -7 303 1 3242 203 77 85 chr3 210075898 210076504 -17448074 - L1MB8 LINE L1 -1800 4346 3751 744 149 35 7 chr3 210076504 210076645 -17447933 - L1MB7 LINE L1 -9 6175 6031 483 227 142 28 chr3 210076750 210076926 -17447652 + MIR SINE MIR 67 262 0 295 305 192 0 chr3 210077086 210077237 -17447341 + L2 LINE L2 3133 3312 -1 337 273 125 8 chr3 210077642 210077770 -17446808 + MIR SINE MIR 118 260 -2 24 77 0 0 chr3 210078269 210078321 -17446257 + AT_rich Low_complexity Low_complexity 1 52 0 2247 118 3 0 chr3 210078460 210078764 -17445814 + AluSc SINE Alu 3 307 -2 1809 189 0 3 chr3 210078771 210078892 -17445686 + AluJb SINE Alu 1 121 -191 243 0 0 0 chr3 210078892 210078919 -17445659 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1809 189 0 3 chr3 210078919 210079098 -17445480 + AluJb SINE Alu 121 300 -12 22 56 0 0 chr3 210080105 210080141 -17444437 + AT_rich Low_complexity Low_complexity 1 36 0 208 297 30 69 chr3 210080963 210081025 -17443553 + MIR3 SINE MIR 95 153 -55 460 301 77 0 chr3 210081025 210081208 -17443370 - MER117 DNA MER1_type 0 197 1 208 297 30 69 chr3 210081208 210081246 -17443332 + MIR3 SINE MIR 153 191 -17 21 0 0 0 chr3 210081720 210081741 -17442837 + AT_rich Low_complexity Low_complexity 1 21 0 576 203 38 15 chr3 210082308 210082441 -17442137 + Charlie4 DNA MER1_type 1823 1958 -3 261 130 0 22 chr3 210082537 210082583 -17441995 - L1ME1 LINE L1 -177 5989 5945 24 53 0 0 chr3 210083089 210083127 -17441451 + AT_rich Low_complexity Low_complexity 1 38 0 31 26 0 0 chr3 210083343 210083381 -17441197 + AT_rich Low_complexity Low_complexity 1 38 0 2825 7 0 0 chr3 210083640 210083945 -17440633 - AluYa5 SINE Alu -6 305 1 2171 122 0 0 chr3 210084213 210084509 -17440069 + AluSq SINE Alu 1 296 -17 340 259 165 32 chr3 210084686 210084844 -17439734 - L1ME LINE L1 -559 5562 5384 405 309 133 45 chr3 210084864 210085436 -17439142 - L1ME LINE L1 -778 5368 4747 912 75 17 0 chr3 210086216 210086336 -17438242 - AluSg/x SINE Alu -13 297 176 403 59 0 0 chr3 210086336 210086387 -17438191 - AluSp/q SINE Alu -82 231 181 1950 69 0 0 chr3 210086387 210086619 -17437959 - AluSg SINE Alu -78 232 1 1721 168 52 0 chr3 210088491 210088782 -17435796 - AluJb SINE Alu -6 306 1 207 179 164 60 chr3 210089128 210089195 -17435383 + MER5C DNA MER1_type 3 76 -248 1666 183 21 0 chr3 210090122 210090406 -17434172 - AluJb SINE Alu -19 293 4 1467 153 47 101 chr3 210090915 210091300 -17433278 + MLT1A1 LTR MaLR 1 364 -1 40 37 0 0 chr3 210091518 210091572 -17433006 + AT_rich Low_complexity Low_complexity 1 54 0 1425 193 17 0 chr3 210091572 210091810 -17432768 - AluJo SINE Alu -70 242 1 2174 107 10 0 chr3 210092034 210092357 -17432221 + AluSp SINE Alu 1 326 0 1239 119 100 132 chr3 210092799 210093178 -17431400 - Cheshire DNA MER1_type 0 2420 2054 * 2235 215 38 36 chr3 210093175 210093728 -17430850 - Cheshire DNA MER1_type -1866 554 1 283 345 100 78 chr3 210094550 210094959 -17429619 - L2 LINE L2 -35 3237 2820 2372 75 0 0 chr3 210095660 210095955 -17428623 + AluY SINE Alu 1 295 -16 183 286 0 20 chr3 210095975 210096024 -17428554 - MIR3 SINE MIR -3 205 158 1862 146 14 0 chr3 210096461 210096749 -17427829 - AluJo SINE Alu -14 298 7 1071 101 0 0 chr3 210096826 210096975 -17427603 - AluSg/x SINE Alu -9 303 155 867 73 0 0 chr3 210096974 210097083 -17427495 - AluY SINE Alu -202 109 1 * 368 310 97 35 chr3 210097194 210097339 -17427239 - L2 LINE L2 0 3272 3119 2837 172 62 16 chr3 210097551 210098160 -17426418 - L1MB7 LINE L1 -41 6143 5507 556 291 92 10 chr3 210098881 210099077 -17425501 - MIR SINE MIR -17 245 34 735 218 104 45 chr3 210099781 210099904 -17424674 - MER58C DNA MER1_type -2205 215 74 1962 138 45 0 chr3 210099904 210100195 -17424383 + AluSx SINE Alu 1 304 -8 735 218 104 45 chr3 210100195 210100273 -17424305 - MER58C DNA MER1_type -2346 74 2 1847 145 20 14 chr3 210100547 210100843 -17423735 + AluSx SINE Alu 2 299 -13 250 188 50 0 chr3 210100843 210101003 -17423575 + (TA)n Simple_repeat Simple_repeat 1 168 0 22 0 0 0 chr3 210102049 210102071 -17422507 + AT_rich Low_complexity Low_complexity 1 22 0 2062 218 82 32 chr3 210103058 210103678 -17420900 + L1M4 LINE L1 3670 4320 -1826 27 62 0 0 chr3 210104025 210104073 -17420505 + AT_rich Low_complexity Low_complexity 1 48 0 2172 55 44 4 chr3 210104571 210104867 -17419711 + AluY SINE Alu 1 307 0 483 306 116 25 chr3 210104873 210105200 -17419378 + HAL1 LINE L1 2 358 -2149 1833 125 0 104 chr3 210105474 210105811 -17418767 - AluJb SINE Alu -10 302 1 887 133 0 0 chr3 210105816 210105944 -17418634 - AluJb SINE Alu -15 297 170 280 305 0 0 chr3 210105947 210106029 -17418549 + HAL1 LINE L1 820 901 -1606 2436 74 3 0 chr3 210106410 210106709 -17417869 + AluSp SINE Alu 1 300 -13 3774 232 86 47 chr3 210106876 210108379 -17416199 + HAL1 LINE L1 945 2505 -2 2315 84 0 16 chr3 210110325 210110636 -17413942 + AluY SINE Alu 1 306 -5 243 378 15 22 chr3 210111156 210111291 -17413287 - MIR SINE MIR -122 140 7 3005 208 56 35 chr3 210111637 210112888 -17411690 - L1MC/D LINE L1 -608 5751 4453 2871 225 84 63 chr3 210112918 210112974 -17411604 - L1M4 LINE L1 -812 5334 5281 432 0 0 0 chr3 210112974 210113022 -17411556 + (TG)n Simple_repeat Simple_repeat 2 49 0 2871 225 84 63 chr3 210113022 210113273 -17411305 - L1M4 LINE L1 -865 5281 5037 216 0 0 0 chr3 210113273 210113297 -17411281 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2324 71 0 0 chr3 210113300 210113582 -17410996 - AluSp SINE Alu -31 282 1 2871 225 84 63 chr3 210113582 210114277 -17410301 - L1M4 LINE L1 -1110 5036 4295 2025 87 49 3 chr3 210114277 210114563 -17410015 + AluSc SINE Alu 1 299 -10 2871 225 84 63 chr3 210114563 210114774 -17409804 - L1M4 LINE L1 -1851 4295 4090 1070 195 74 100 chr3 210114771 210115161 -17409417 - L1M4 LINE L1 -877 5203 4824 * 506 263 11 90 chr3 210115210 210115476 -17409102 - L1ME LINE L1 -2681 3399 3155 * 1111 197 93 13 chr3 210115471 210115771 -17408807 - L1ME LINE L1 -3129 2951 2628 1127 258 69 11 chr3 210115788 210116261 -17408317 - L1ME LINE L1 -3818 2262 1798 284 220 75 48 chr3 210116274 210116460 -17408118 + L1M4 LINE L1 3035 3225 -2921 1951 134 7 0 chr3 210116465 210116748 -17407830 - AluSx SINE Alu -16 296 12 2789 114 22 47 chr3 210116756 210117185 -17407393 - L1MA4A LINE L1 -401 5902 5485 198 0 0 0 chr3 210117185 210117207 -17407371 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 2789 114 22 47 chr3 210117207 210117267 -17407311 - L1MA4A LINE L1 -818 5485 5425 2271 88 0 0 chr3 210117271 210117578 -17407000 - AluSx SINE Alu 0 308 2 729 116 9 0 chr3 210117579 210117691 -17406887 - L1MA4A LINE L1 -1153 4993 4881 * 1539 260 98 57 chr3 210117688 210118989 -17405589 - L1ME LINE L1 -4715 1365 19 31 0 0 0 chr3 210119119 210119150 -17405428 + AT_rich Low_complexity Low_complexity 1 31 0 497 235 159 0 chr3 210119916 210120048 -17404530 + MIR SINE MIR 30 182 -80 2127 97 49 0 chr3 210120431 210120719 -17403859 + AluSx SINE Alu 1 302 -10 3724 148 55 8 chr3 210120831 210121465 -17403113 - L1MB5 LINE L1 -35 6139 5476 221 262 103 65 chr3 210121755 210121862 -17402716 + L2 LINE L2 3162 3272 0 2193 99 3 13 chr3 210122463 210122775 -17401803 + AluSx SINE Alu 1 309 -3 1938 141 13 3 chr3 210124581 210124885 -17399693 + MER21A-int LTR ERV1 3830 4136 -55 1468 150 91 13 chr3 210124972 210125362 -17399216 + MER21A LTR ERV1 1 441 -422 215 31 31 0 chr3 210125500 210125532 -17399046 + (CAAAA)n Simple_repeat Simple_repeat 3 35 0 2392 75 3 3 chr3 210125768 210126073 -17398505 - AluY SINE Alu -6 305 1 309 173 0 0 chr3 210126253 210126305 -17398273 - Tigger4(Zombi) DNA MER2_type -2679 52 1 2702 237 109 47 chr3 210126346 210127592 -17396986 - L2 LINE L2 -10 3303 1969 2088 123 0 10 chr3 210127857 210128165 -17396413 + AluSx SINE Alu 1 305 -7 2951 113 9 0 chr3 210128341 210128764 -17395814 - L1PA13 LINE L1 -20 6143 5717 329 283 92 0 chr3 210128780 210128900 -17395678 - L1ME4a LINE L1 -195 5926 5796 200 111 28 0 chr3 210128955 210128991 -17395587 + (TA)n Simple_repeat Simple_repeat 1 37 0 254 300 200 0 chr3 210129030 210129160 -17395418 + L2 LINE L2 3117 3272 0 22 0 0 0 chr3 210129833 210129855 -17394723 + AT_rich Low_complexity Low_complexity 1 22 0 23 54 0 0 chr3 210130099 210130136 -17394442 + AT_rich Low_complexity Low_complexity 1 37 0 250 213 21 0 chr3 210130216 210130263 -17394315 - L2 LINE L2 -68 3204 3157 865 309 140 18 chr3 210131882 210132381 -17392197 + L2 LINE L2 1979 2538 -776 490 114 0 38 chr3 210132509 210132588 -17391990 + Tigger2 DNA MER2_type 1 76 -2642 * 2490 147 48 5 chr3 210132576 210132997 -17391581 + Tigger2 DNA MER2_type 2280 2718 0 31 26 0 0 chr3 210133410 210133448 -17391130 + AT_rich Low_complexity Low_complexity 1 38 0 1725 164 17 10 chr3 210134140 210134433 -17390145 + AluJb SINE Alu 1 295 -17 36 23 0 0 chr3 210134793 210134836 -17389742 + AT_rich Low_complexity Low_complexity 1 43 0 1295 285 184 34 chr3 210135792 210136799 -17387779 - L2 LINE L2 0 3313 2139 1053 160 18 0 chr3 210137429 210137598 -17386980 - AluJb SINE Alu -13 299 128 21 36 0 0 chr3 210138969 210138997 -17385581 + AT_rich Low_complexity Low_complexity 1 28 0 36 62 0 0 chr3 210139103 210139167 -17385411 + AT_rich Low_complexity Low_complexity 1 64 0 26 0 0 0 chr3 210139666 210139692 -17384886 + AT_rich Low_complexity Low_complexity 1 26 0 739 263 60 16 chr3 210140231 210140482 -17384096 + MIR SINE MIR 1 262 0 394 239 56 35 chr3 210140605 210140747 -17383831 + L2 LINE L2 3169 3313 0 1096 121 12 6 chr3 210141853 210142018 -17382560 - AluSg/x SINE Alu -13 299 134 2082 115 0 16 chr3 210142018 210142332 -17382246 - AluY SINE Alu -2 309 1 226 343 60 60 chr3 210142521 210142737 -17381841 - L2 LINE L2 -237 3035 2820 470 353 49 38 chr3 210143216 210143584 -17380994 + L1ME LINE L1 50 421 -5649 1562 176 62 37 chr3 210143585 210143937 -17380641 + L1ME1 LINE L1 5806 6166 0 7052 55 6 3 chr3 210143994 210145653 -17378925 + L1PA5 LINE L1 4494 6154 0 501 223 189 0 chr3 210146000 210146175 -17378403 - MER3 DNA MER1_type 0 209 2 318 279 5 24 chr3 210146463 210146669 -17377909 + G-rich Low_complexity Low_complexity 1 202 0 1269 155 0 5 chr3 210146670 210146870 -17377708 + AluSg/x SINE Alu 105 303 -6 401 227 99 133 chr3 210146880 210147083 -17377495 + MIR SINE MIR 62 256 -6 1680 162 54 0 chr3 210147294 210147572 -17377006 - AluJb SINE Alu -19 293 1 2249 55 26 29 chr3 210148604 210148915 -17375663 + AluY SINE Alu 2 311 0 237 65 0 0 chr3 210149026 210149057 -17375521 + (T)n Simple_repeat Simple_repeat 1 31 0 2259 112 0 0 chr3 210150395 210150699 -17373879 + AluSc SINE Alu 1 304 -5 1721 183 3 3 chr3 210153159 210153448 -17371130 - AluJb SINE Alu -23 289 1 2071 119 3 7 chr3 210153609 210153923 -17370655 + AluSq SINE Alu 1 313 0 1951 161 7 0 chr3 210153948 210154258 -17370320 + AluJb SINE Alu 1 312 0 4290 141 21 7 chr3 210154484 210154551 -17370027 + L1MB3 LINE L1 5409 5474 -709 234 0 0 0 chr3 210154551 210154577 -17370001 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 4290 141 21 7 chr3 210154577 210155266 -17369312 + L1MB3 LINE L1 5474 6176 -7 1442 238 135 25 chr3 210156486 210157130 -17367448 + MER20B DNA MER1_type 66 780 -3 1906 133 46 0 chr3 210157636 210157921 -17366657 - AluSx SINE Alu -14 298 1 322 303 42 50 chr3 210158087 210158206 -17366372 - L2 LINE L2 -7 3306 3189 225 287 113 35 chr3 210158246 210158361 -17366217 - L2 LINE L2 -947 2367 2244 2056 133 0 13 chr3 210158435 210158751 -17365827 + AluSx SINE Alu 1 312 0 789 191 78 30 chr3 210159030 210159261 -17365317 + L1MC3 LINE L1 7543 7784 -1 251 284 45 0 chr3 210160813 210160880 -17363698 + MIR SINE MIR 31 100 -162 21 0 0 0 chr3 210160930 210160951 -17363627 + AT_rich Low_complexity Low_complexity 1 21 0 448 296 113 19 chr3 210161287 210161895 -17362683 + L1MEd LINE L1 874 1621 -869 4135 175 27 27 chr3 210162042 210162223 -17362355 + L1MB7 LINE L1 5154 5333 -851 2194 118 0 19 chr3 210162223 210162536 -17362042 + AluSp SINE Alu 1 307 -6 4135 175 27 27 chr3 210162536 210163370 -17361208 + L1MB7 LINE L1 5333 6172 -12 2168 87 40 3 chr3 210163452 210163750 -17360828 + AluY SINE Alu 2 310 -1 305 363 68 0 chr3 210163883 210164073 -17360505 + L1MC/D LINE L1 4578 4780 -1366 388 297 103 12 chr3 210164228 210164636 -17359942 + L1MC/D LINE L1 4885 5329 -817 522 296 184 7 chr3 210164669 210164973 -17359605 + L1MC/D LINE L1 5395 5752 -2056 1221 296 100 19 chr3 210165179 210165820 -17358758 - L2 LINE L2 -81 3232 2533 280 69 69 52 chr3 210165911 210165969 -17358609 - L1MA8 LINE L1 -3 6288 6230 624 202 56 22 chr3 210166279 210166457 -17358121 + L1MC5 LINE L1 7711 7894 -67 1861 132 6 65 chr3 210166883 210167208 -17357370 + AluSx SINE Alu 1 306 -6 1743 142 34 54 chr3 210167459 210167755 -17356823 + AluJo SINE Alu 3 292 -20 1763 181 13 7 chr3 210167844 210168153 -17356425 - AluJo SINE Alu -1 311 1 24 32 0 0 chr3 210168315 210168346 -17356232 + AT_rich Low_complexity Low_complexity 1 31 0 2254 75 16 0 chr3 210168410 210168715 -17355863 + AluY SINE Alu 1 310 -1 953 162 107 58 chr3 210168999 210169308 -17355270 - MER33 DNA MER1_type 0 324 1 299 341 41 32 chr3 210169662 210169785 -17354793 - L2 LINE L2 0 3272 3149 973 236 10 0 chr3 210169843 210170042 -17354536 - AluJo SINE Alu -23 289 89 717 187 102 13 chr3 210170104 210170247 -17354331 - MER33 DNA MER1_type -2284 301 127 2257 125 0 0 chr3 210170247 210170559 -17354019 - AluSx SINE Alu 0 312 1 717 187 102 13 chr3 210170559 210170650 -17353928 - MER33 DNA MER1_type -2458 127 46 348 225 244 31 chr3 210171409 210171569 -17353009 + MER3 DNA MER1_type 3 196 -13 25 0 0 0 chr3 210172925 210172950 -17351628 + AT_rich Low_complexity Low_complexity 1 25 0 26 0 0 0 chr3 210174248 210174274 -17350304 + GC_rich Low_complexity Low_complexity 1 26 0 304 319 96 54 chr3 210174314 210174574 -17350004 + L1M2 LINE L1 559 829 -6020 2459 44 0 35 chr3 210175449 210175765 -17348813 + AluY SINE Alu 1 305 -6 324 259 281 22 chr3 210176093 210176278 -17348300 - MIR SINE MIR -12 250 18 2232 83 6 25 chr3 210176605 210176919 -17347659 - AluSc SINE Alu -1 308 1 1759 153 246 43 chr3 210176999 210177516 -17347062 - LTR29 LTR ERV1 0 622 1 494 236 157 21 chr3 210177537 210177728 -17346850 - MER112 DNA MER1_type -43 217 1 232 296 102 39 chr3 210178070 210178276 -17346302 - L2 LINE L2 -217 3055 2837 2390 87 0 7 chr3 210179362 210179662 -17344916 + AluY SINE Alu 1 298 -13 1958 141 48 0 chr3 210181120 210181411 -17343167 - AluJb SINE Alu -7 305 1 239 246 82 0 chr3 210182190 210182251 -17342327 + L2 LINE L2 3134 3199 -73 2182 108 47 0 chr3 210182309 210182606 -17341972 + AluSx SINE Alu 1 311 -1 291 345 109 0 chr3 210182992 210183102 -17341476 - L2 LINE L2 0 3272 3151 880 132 0 0 chr3 210184810 210184939 -17339639 + FLAM_C SINE Alu 12 140 -3 1113 172 0 0 chr3 210186133 210186302 -17338276 + AluJb SINE Alu 129 297 -15 345 265 60 0 chr3 210186750 210186867 -17337711 - MIR SINE MIR 0 262 139 272 182 208 0 chr3 210186887 210186964 -17337614 - MIR SINE MIR -4 258 166 517 259 37 49 chr3 210187269 210187431 -17337147 - MIR SINE MIR -100 162 3 1377 172 55 52 chr3 210188316 210188627 -17335951 - AluJo SINE Alu 0 312 1 27 0 0 0 chr3 210188791 210188818 -17335760 + AT_rich Low_complexity Low_complexity 1 27 0 2081 127 3 0 chr3 210188818 210189109 -17335469 - AluSx SINE Alu -20 292 1 1478 178 23 6 chr3 210189109 210189407 -17335171 + MER21B LTR ERV1 461 866 -65 4797 192 216 22 chr3 210190054 210191256 -17333322 + L1MA4A LINE L1 2 1435 -5414 8313 167 58 28 chr3 210191268 210191410 -17333168 + L1MA4A LINE L1 2254 2390 -4615 245 111 0 0 chr3 210191410 210191446 -17333132 - U2 snRNA snRNA -152 36 1 8313 167 58 28 chr3 210191446 210191535 -17333043 + L1MA4A LINE L1 2390 2475 -4530 1810 162 41 0 chr3 210191535 210191825 -17332753 + AluSx SINE Alu 6 307 -5 8313 167 58 28 chr3 210191825 210193650 -17330928 + L1MA4A LINE L1 2475 4244 -2761 234 0 0 0 chr3 210193650 210193676 -17330902 + (CAAA)n Simple_repeat Simple_repeat 2 27 0 8313 167 58 28 chr3 210193676 210194940 -17329638 + L1MA4A LINE L1 4244 5469 -1536 1641 105 50 0 chr3 210194940 210195159 -17329419 - MER30 DNA MER1_type 0 230 1 8313 167 58 28 chr3 210195159 210195413 -17329165 + L1MA4A LINE L1 5469 5714 -1291 1623 95 0 18 chr3 210195413 210195634 -17328944 + AluSc SINE Alu 93 309 0 8313 167 58 28 chr3 210195634 210195645 -17328933 + L1MA4A LINE L1 5714 5723 -1282 1971 138 21 0 chr3 210195645 210195934 -17328644 + L1PA16 LINE L1 5865 6159 -7 8313 167 58 28 chr3 210195934 210196669 -17327909 + L1MA4A LINE L1 5723 6774 -231 4794 131 26 42 chr3 210196879 210197071 -17327507 + L1MA4A LINE L1 5840 6034 -971 1623 95 0 18 chr3 210197071 210197292 -17327286 + AluSc SINE Alu 93 309 0 4794 131 26 42 chr3 210197292 210197303 -17327275 + L1MA4A LINE L1 6034 6044 -961 1964 139 21 0 chr3 210197303 210197591 -17326987 + L1PA16 LINE L1 5865 6158 -8 4794 131 26 42 chr3 210197591 210198326 -17326252 + L1MA4A LINE L1 6044 6774 -231 1561 109 13 4 chr3 210198376 210198606 -17325972 + L1MA4A LINE L1 6761 6992 -13 215 211 19 19 chr3 210198777 210198829 -17325749 - L2 LINE L2 -6 3307 3256 1803 169 0 4 chr3 210199194 210199495 -17325083 - AluJb SINE Alu 0 303 4 704 137 73 8 chr3 210200478 210200602 -17323976 + MLT1A1 LTR MaLR 1 132 -233 227 354 0 0 chr3 210200761 210200860 -17323718 + L1MC/D LINE L1 5346 5444 -798 1190 215 14 0 chr3 210200875 210201098 -17323480 + MLT1A1 LTR MaLR 140 365 0 2343 75 27 0 chr3 210201659 210201953 -17322625 - AluSx SINE Alu -10 302 1 367 283 288 4 chr3 210202688 210202969 -17321609 + L2 LINE L2 2661 3012 -301 396 234 109 31 chr3 210202973 210203101 -17321477 + L2 LINE L2 3166 3303 -10 353 261 11 99 chr3 210203670 210203953 -17320625 + L1MEc LINE L1 2034 2291 -4105 852 264 79 72 chr3 210204121 210204959 -17319619 + L1MEc LINE L1 2391 3234 -2981 252 364 38 58 chr3 210205398 210205573 -17319005 + L1MC/D LINE L1 5350 5518 -2290 1819 166 3 3 chr3 210205573 210205875 -17318703 - AluJb SINE Alu -10 302 1 252 364 38 58 chr3 210205875 210205990 -17318588 + L1MC/D LINE L1 5518 5634 -2174 2074 131 0 49 chr3 210206175 210206503 -17318075 + AluSq SINE Alu 1 312 -1 1093 239 105 60 chr3 210206657 210207351 -17317227 + L1MC5 LINE L1 7062 7786 -175 580 271 59 42 chr3 210207794 210208030 -17316548 - MIR SINE MIR 0 262 23 1263 213 100 63 chr3 210208146 210208545 -17316033 + MLT2D LTR ERVL 1 414 0 738 127 0 0 chr3 210209593 210209719 -17314859 + (GGAA)n Simple_repeat Simple_repeat 3 128 0 851 144 0 0 chr3 210209921 210210046 -17314532 + FAM SINE Alu 1 125 -60 1453 109 45 41 chr3 210210046 210210267 -17314311 + AluSg/x SINE Alu 85 306 -6 2575 41 0 19 chr3 210211117 210211434 -17313144 - AluY SINE Alu 0 311 1 273 261 45 34 chr3 210211600 210211688 -17312890 + AluYb8 SINE Alu 99 187 -121 1996 94 0 0 chr3 210211691 210211945 -17312633 - AluSg1 SINE Alu -55 254 1 475 231 68 20 chr3 210211998 210212145 -17312433 + MIR SINE MIR 53 206 -56 205 265 88 0 chr3 210213213 210213281 -17311297 + MIR SINE MIR 119 192 -70 2446 77 0 0 chr3 210213300 210213597 -17310981 + AluSc SINE Alu 1 297 -12 189 188 0 0 chr3 210213629 210213661 -17310917 + MIR SINE MIR 225 256 -6 360 159 262 37 chr3 210213756 210213863 -17310715 + MER5A DNA MER1_type 59 189 0 2198 129 0 0 chr3 210214212 210214521 -17310057 + AluSx SINE Alu 1 309 -3 2220 90 20 10 chr3 210215005 210215135 -17309443 + AluSx SINE Alu 1 128 -184 225 0 0 0 chr3 210215135 210215160 -17309418 + (CAAA)n Simple_repeat Simple_repeat 4 28 0 2220 90 20 10 chr3 210215160 210215330 -17309248 + AluSx SINE Alu 128 304 -8 2014 103 27 17 chr3 210215332 210215624 -17308954 + AluSx SINE Alu 1 295 -17 302 203 0 13 chr3 210215655 210215734 -17308844 + CT-rich Low_complexity Low_complexity 1 78 0 1938 150 3 0 chr3 210217334 210217620 -17306958 + AluJb SINE Alu 1 287 -25 21 0 0 0 chr3 210218463 210218484 -17306094 + AT_rich Low_complexity Low_complexity 1 21 0 838 195 139 36 chr3 210218580 210218831 -17305747 - HAL1 LINE L1 -109 2398 2122 1949 125 0 44 chr3 210219096 210219427 -17305151 + AluSx SINE Alu 3 320 0 2176 116 0 10 chr3 210219853 210220156 -17304422 + AluSx SINE Alu 1 300 -12 2333 238 51 34 chr3 210220568 210221259 -17303319 - HAL1 LINE L1 -737 1770 1061 2455 231 50 13 chr3 210221259 210221782 -17302796 - MLT1F LTR MaLR 0 542 1 2333 238 51 34 chr3 210221782 210221919 -17302659 - HAL1 LINE L1 -1446 1061 928 531 265 38 98 chr3 210222286 210222404 -17302174 + MIR SINE MIR 15 110 -152 2323 84 0 10 chr3 210222404 210222712 -17301866 + AluY SINE Alu 1 305 -6 531 265 38 98 chr3 210222712 210222857 -17301721 + MIR SINE MIR 110 262 0 1947 147 0 3 chr3 210223420 210223713 -17300865 + AluJb SINE Alu 1 292 -20 658 259 170 0 chr3 210223727 210223951 -17300627 - MIR SINE MIR 0 262 1 29 84 0 0 chr3 210224062 210224133 -17300445 + AT_rich Low_complexity Low_complexity 1 71 0 2278 110 3 0 chr3 210224133 210224433 -17300145 - AluSg SINE Alu -9 301 1 2812 134 5 31 chr3 210224721 210224914 -17299664 - L1PA14 LINE L1 -4 6157 5960 2028 132 48 0 chr3 210224914 210225203 -17299375 - AluSx SINE Alu -9 303 1 2812 134 5 31 chr3 210225203 210225457 -17299121 - L1PA14 LINE L1 -201 5960 5722 2243 105 0 19 chr3 210225904 210226217 -17298361 + AluSx SINE Alu 1 307 -5 239 269 0 0 chr3 210226311 210226363 -17298215 + T-rich Low_complexity Low_complexity 2 53 0 338 137 20 0 chr3 210226554 210226605 -17297973 - L2 LINE L2 -10 3262 3211 231 269 64 0 chr3 210226682 210226760 -17297818 + MIR SINE MIR 180 262 0 2218 103 0 0 chr3 210227491 210227808 -17296770 + AluSg SINE Alu 1 310 0 694 176 27 7 chr3 210228191 210228339 -17296239 - LTR37A LTR ERV1 -3 423 273 224 248 34 0 chr3 210228340 210228457 -17296121 + (TA)n Simple_repeat Simple_repeat 1 121 0 490 212 0 27 chr3 210228468 210228483 -17296095 + (TA)n Simple_repeat Simple_repeat 2 16 -164 2322 87 0 10 chr3 210228483 210228782 -17295796 - AluSg SINE Alu -14 296 1 490 212 0 27 chr3 210228782 210228950 -17295628 + (TA)n Simple_repeat Simple_repeat 16 180 0 1497 251 75 16 chr3 210229246 210229684 -17294894 + MER69 DNA AcHobo 105 568 -658 * 1696 192 50 28 chr3 210229668 210230131 -17294447 + MER69 DNA AcHobo 1997 2469 -57 1510 138 140 93 chr3 210230636 210231064 -17293514 + LTR7 LTR ERV1 1 448 -2 2163 117 0 0 chr3 210231107 210231406 -17293172 - AluY SINE Alu -12 299 1 641 313 53 9 chr3 210231421 210231648 -17292930 + MLT1K LTR MaLR 240 476 -112 42 16 0 31 chr3 210231963 210231983 -17292595 + AT_rich Low_complexity Low_complexity 1 20 -42 2223 111 0 0 chr3 210231983 210232272 -17292306 + AluSg SINE Alu 1 289 -21 252 0 0 0 chr3 210232272 210232300 -17292278 + (TTAAA)n Simple_repeat Simple_repeat 3 30 0 42 16 0 31 chr3 210232300 210232342 -17292236 + AT_rich Low_complexity Low_complexity 18 62 0 216 206 10 39 chr3 210232348 210232450 -17292128 + A-rich Low_complexity Low_complexity 5 103 0 32 26 0 0 chr3 210232464 210232503 -17292075 + AT_rich Low_complexity Low_complexity 1 39 0 2193 106 0 3 chr3 210233388 210233681 -17290897 - AluSc SINE Alu -12 297 6 243 274 16 0 chr3 210235134 210235196 -17289382 + L2 LINE L2 3251 3313 0 197 276 155 0 chr3 210235274 210235332 -17289246 - MIR SINE MIR -107 101 35 2312 87 0 3 chr3 210235364 210235653 -17288925 - AluSq SINE Alu -25 288 1 311 322 81 66 chr3 210235906 210235947 -17288631 + MIR SINE MIR 28 67 -195 2064 104 35 0 chr3 210235947 210236235 -17288343 - AluSp SINE Alu -15 298 1 311 322 81 66 chr3 210236235 210236404 -17288174 + MIR SINE MIR 67 241 -21 391 280 38 48 chr3 210236517 210236703 -17287875 - MIR3 SINE MIR -11 197 14 724 230 73 0 chr3 210236857 210237022 -17287556 + MIR SINE MIR 70 246 -16 2223 114 0 7 chr3 210237041 210237340 -17287238 - AluSx SINE Alu -15 297 1 299 300 0 22 chr3 210238784 210238874 -17285704 + MER5A DNA MER1_type 1 88 -101 291 219 49 24 chr3 210240074 210240156 -17284422 + Charlie7 DNA MER1_type 2529 2612 0 485 294 126 37 chr3 210240395 210240609 -17283969 + MIR SINE MIR 19 251 -11 307 216 54 0 chr3 210241538 210241612 -17282966 + MLT1D LTR MaLR 2 79 -426 2196 167 13 26 chr3 210241614 210242003 -17282575 - MSTB1 LTR MaLR -2 430 47 1085 164 0 6 chr3 210242006 210242183 -17282395 - AluJb SINE Alu -3 309 134 2055 127 0 7 chr3 210242183 210242482 -17282096 - AluSx SINE Alu -15 297 1 325 167 0 0 chr3 210242482 210242536 -17282042 - MSTB1 LTR MaLR -372 54 1 280 42 0 42 chr3 210242611 210242659 -17281919 + (TTTTA)n Simple_repeat Simple_repeat 1 46 0 1208 73 7 0 chr3 210242659 210242810 -17281768 - L1PA3 LINE L1 -24 6131 5980 428 241 21 64 chr3 210242823 210242964 -17281614 - MIR SINE MIR -119 143 9 191 264 83 0 chr3 210242973 210243045 -17281533 - MIR SINE MIR -108 154 77 1910 124 17 3 chr3 210243164 210243455 -17281123 - AluSc SINE Alu -14 295 1 2354 89 3 0 chr3 210243973 210244276 -17280302 - AluSx SINE Alu -8 304 1 2264 77 28 0 chr3 210244621 210244908 -17279670 + AluSg SINE Alu 2 296 -14 398 202 219 17 chr3 210244918 210245037 -17279541 - HAL1 LINE L1 -2364 143 1 1740 220 131 25 chr3 210245117 210245467 -17279111 - MER34 LTR ERV1 0 542 124 2325 112 0 0 chr3 210245467 210245779 -17278799 - AluSx SINE Alu 0 312 1 1740 220 131 25 chr3 210245779 210245918 -17278660 - MER34 LTR ERV1 -418 124 1 836 203 0 0 chr3 210245947 210246119 -17278459 - FRAM SINE Alu 0 172 1 23 86 0 0 chr3 210246287 210246345 -17278233 + AT_rich Low_complexity Low_complexity 1 58 0 5304 124 20 24 chr3 210246555 210247337 -17277241 + LTR19C LTR ERV1 1 779 0 2581 268 38 46 chr3 210247366 210248393 -17276185 + LTR19C-int LTR ERV1 30 1048 -5948 3144 191 26 76 chr3 210248598 210248787 -17275791 + HUERS-P3 LTR ERV1 878 1075 -7844 2242 90 3 13 chr3 210248787 210249099 -17275479 - AluSx SINE Alu -3 309 1 3144 191 26 76 chr3 210249099 210249682 -17274896 + HUERS-P3 LTR ERV1 1075 1611 -7308 3834 180 6 6 chr3 210249745 210250390 -17274188 + HUERS-P3 LTR ERV1 1619 2263 -6656 * 8730 164 19 3 chr3 210250369 210251777 -17272801 + HUERS-P3 LTR ERV1 2637 4066 -4853 2199 92 3 26 chr3 210251777 210252081 -17272497 + AluSx SINE Alu 1 297 -15 724 230 73 0 chr3 210252100 210252265 -17272313 - MIR SINE MIR -16 246 70 391 280 38 48 chr3 210252419 210252605 -17271973 + MIR3 SINE MIR 14 197 -11 341 309 86 67 chr3 210252718 210252886 -17271692 - MIR SINE MIR -21 241 67 2064 104 35 0 chr3 210252886 210253174 -17271404 + AluSp SINE Alu 1 298 -15 341 309 86 67 chr3 210253174 210253215 -17271363 - MIR SINE MIR -195 67 28 2179 87 11 3 chr3 210253468 210253754 -17270824 + AluSq SINE Alu 1 288 -25 200 347 120 0 chr3 210253768 210253843 -17270735 + MIR SINE MIR 18 101 -107 243 274 16 0 chr3 210253921 210253983 -17270595 - L2 LINE L2 0 3313 3251 1072 115 4 73 chr3 210255451 210255712 -17268866 + AluSc SINE Alu 6 248 -61 701 231 48 25 chr3 210255848 210256318 -17268260 + L1M4 LINE L1 2894 3452 -2694 * 1284 244 30 25 chr3 210256317 210256755 -17267823 - L1M4 LINE L1 -2627 3519 3080 732 136 96 48 chr3 210256759 210256884 -17267694 - FLAM_C SINE Alu 0 133 3 1917 229 48 41 chr3 210256913 210257333 -17267245 + L1M4 LINE L1 3995 4423 -1723 2368 76 0 32 chr3 210257333 210257647 -17266931 + AluY SINE Alu 1 304 -7 1917 229 48 41 chr3 210257647 210257886 -17266692 + L1M4 LINE L1 4423 4659 -1487 2180 119 14 0 chr3 210259604 210259899 -17264679 - AluSx SINE Alu -13 299 1 1304 146 0 0 chr3 210260181 210260380 -17264198 - L1PA13 LINE L1 0 6163 5965 2122 118 48 0 chr3 210260380 210260669 -17263909 - AluSx SINE Alu -9 303 1 1138 286 59 38 chr3 210260669 210260809 -17263769 - L1MEd LINE L1 -4910 1209 1073 2072 131 0 29 chr3 210260809 210261121 -17263457 - AluSx SINE Alu -9 303 1 1138 286 59 38 chr3 210261121 210261762 -17262816 - L1MEd LINE L1 -5046 1073 561 272 285 108 8 chr3 210261946 210262076 -17262502 - L1MEd LINE L1 -5976 143 1 1789 149 33 0 chr3 210262888 210263163 -17261415 - AluJb SINE Alu -28 284 1 273 314 87 23 chr3 210263664 210263836 -17260742 + MLT1K LTR MaLR 398 580 -8 1539 178 4 4 chr3 210263925 210264184 -17260394 - AluJo SINE Alu -53 259 1 24 53 0 0 chr3 210265746 210265784 -17258794 + GC_rich Low_complexity Low_complexity 1 38 0 303 291 10 48 chr3 210266724 210266827 -17257751 + MER5A DNA MER1_type 43 141 -48 356 243 36 18 chr3 210267663 210267774 -17256804 + MIR SINE MIR 90 202 -60 261 309 230 0 chr3 210267848 210268013 -17256565 - L2 LINE L2 -206 3066 2864 2307 107 3 3 chr3 210268077 210268387 -17256191 - AluSx SINE Alu -2 310 1 1092 277 78 27 chr3 210268406 210268933 -17255645 - L1ME4a LINE L1 -56 6065 5512 246 203 17 34 chr3 210269112 210269171 -17255407 + CT-rich Low_complexity Low_complexity 3 60 0 300 70 0 0 chr3 210269287 210269330 -17255248 + (TC)n Simple_repeat Simple_repeat 2 44 0 1705 160 7 11 chr3 210269333 210269614 -17254964 - AluJo SINE Alu -32 280 1 366 245 152 82 chr3 210269620 210269734 -17254844 - L1ME4a LINE L1 -253 5868 5763 2553 43 7 0 chr3 210269734 210270036 -17254542 - AluY SINE Alu -7 304 1 366 245 152 82 chr3 210270036 210270178 -17254400 - L1ME4a LINE L1 -358 5763 5594 342 0 0 0 chr3 210270215 210270253 -17254325 + (CA)n Simple_repeat Simple_repeat 1 38 0 1592 199 0 7 chr3 210270280 210270566 -17254012 + AluJo SINE Alu 1 284 -28 234 105 0 0 chr3 210270577 210270615 -17253963 + (CAAA)n Simple_repeat Simple_repeat 1 38 0 444 339 24 0 chr3 210271315 210271439 -17253139 - L2 LINE L2 -8 3264 3138 2224 116 0 10 chr3 210271595 210271896 -17252682 + AluSx SINE Alu 1 298 -14 204 260 20 0 chr3 210271900 210271950 -17252628 - L2 LINE L2 -662 2652 2602 583 265 56 19 chr3 210272243 210272511 -17252067 - L1M4 LINE L1 -3621 2525 2248 825 250 0 59 chr3 210272551 210272755 -17251823 - AluJo SINE Alu -30 282 91 870 152 0 0 chr3 210272942 210273067 -17251511 - FLAM_C SINE Alu -18 125 1 556 255 43 7 chr3 210273068 210273209 -17251369 - MER5B DNA MER1_type -1 177 32 733 279 0 27 chr3 210273783 210273966 -17250612 + MER5A DNA MER1_type 1 178 -11 233 299 186 0 chr3 210276001 210276098 -17248480 - L2 LINE L2 0 3272 3158 2083 142 0 7 chr3 210277392 210277694 -17246884 - AluSx SINE Alu -12 300 1 302 289 58 10 chr3 210278535 210278639 -17245939 + L1M4 LINE L1 2759 2867 -3982 1037 173 0 0 chr3 210278786 210278959 -17245619 + AluJb SINE Alu 118 290 -22 294 292 53 60 chr3 210279077 210279361 -17245217 + L1M4 LINE L1 3223 3504 -3344 845 300 85 19 chr3 210279389 210279859 -17244719 + L1MEc LINE L1 1320 1820 -4576 365 309 81 51 chr3 210279860 210279984 -17244594 + L1MEc LINE L1 1864 1983 -4413 1070 200 0 31 chr3 210279984 210280179 -17244399 + MER5A DNA MER1_type 1 189 0 365 309 81 51 chr3 210280179 210280349 -17244229 + L1MEc LINE L1 1983 2167 -4229 1225 225 41 6 chr3 210280350 210280666 -17243912 + L1M4 LINE L1 5560 5886 -962 * 3726 156 35 81 chr3 210280663 210281294 -17243284 + L1MC3 LINE L1 6281 6863 -922 306 0 0 0 chr3 210281294 210281328 -17243250 + (CA)n Simple_repeat Simple_repeat 1 34 0 3726 156 35 81 chr3 210281328 210281557 -17243021 + L1MC3 LINE L1 6863 7101 -684 198 167 0 0 chr3 210281670 210281706 -17242872 + (CTG)n Simple_repeat Simple_repeat 1 36 0 2724 161 80 77 chr3 210282090 210282370 -17242208 + L1MC3 LINE L1 7091 7369 -416 2772 157 11 2 chr3 210282370 210282811 -17241767 - MER65A LTR ERV1 0 445 1 2724 161 80 77 chr3 210282811 210283206 -17241372 + L1MC3 LINE L1 7369 7768 -17 469 239 55 59 chr3 210283218 210283426 -17241152 + L1MEc LINE L1 2158 2326 -3889 1533 199 3 7 chr3 210283426 210283708 -17240870 + AluJo SINE Alu 11 291 -21 469 239 55 59 chr3 210283708 210283766 -17240812 + L1MEc LINE L1 2326 2383 -3832 272 241 0 25 chr3 210283804 210283883 -17240695 - L1 LINE L1 -3850 2296 2220 * 719 316 72 9 chr3 210283880 210284311 -17240267 + L1MEc LINE L1 2412 2869 -3346 552 269 90 0 chr3 210284765 210284932 -17239646 + MIR SINE MIR 81 262 0 354 204 78 0 chr3 210284942 210285045 -17239533 - L1ME4a LINE L1 -4 6117 6007 928 287 15 27 chr3 210285170 210285508 -17239070 - L1ME4a LINE L1 -309 5812 5479 2071 98 39 0 chr3 210285535 210285820 -17238758 - AluSx SINE Alu -16 296 1 2191 244 94 55 chr3 210285820 210286820 -17237758 - L2 LINE L2 -7 3306 2257 1279 275 59 5 chr3 210286825 210287200 -17237378 - L2 LINE L2 -1554 1760 1366 299 360 44 20 chr3 210287253 210287456 -17237122 - L2 LINE L2 -649 2665 2458 2301 92 0 0 chr3 210287964 210288259 -17236319 + AluY SINE Alu 1 295 -16 231 323 63 31 chr3 210288694 210288821 -17235757 + L2 LINE L2 3137 3267 -5 1685 229 97 19 chr3 210289796 210290311 -17234267 + MER74B LTR ERVL 58 612 -10 1463 259 98 45 chr3 210290320 210291068 -17233510 + L1M4 LINE L1 4071 4857 -1289 252 122 0 0 chr3 210291156 210291197 -17233381 + (A)n Simple_repeat Simple_repeat 1 41 0 3313 224 65 2 chr3 210291314 210292134 -17232444 + L1PBa LINE L1 11 881 -5982 * 5657 152 14 3 chr3 210292133 210293807 -17230771 + L1PB1 LINE L1 4463 6150 -1 8466 159 46 28 chr3 210294152 210296329 -17228249 + LTR19C-int LTR ERV1 2215 6995 -1 1958 93 62 16 chr3 210296333 210296654 -17227924 + LTR19C LTR ERV1 1 336 -443 688 25 0 0 chr3 210296657 210296737 -17227841 + AluY SINE Alu 21 100 -211 585 259 32 77 chr3 210296737 210296770 -17227808 - MIR SINE MIR -22 240 207 2406 87 3 0 chr3 210296770 210297070 -17227508 - AluSp SINE Alu -12 301 1 585 259 32 77 chr3 210297070 210297256 -17227322 - MIR SINE MIR -55 207 31 415 133 122 0 chr3 210297822 210297920 -17226658 - L1MB2 LINE L1 -3 6168 6059 1877 174 10 0 chr3 210298113 210298401 -17226177 - AluSx SINE Alu -21 291 1 1237 282 64 26 chr3 210298444 210299118 -17225460 - L1MC4a LINE L1 -344 5818 5266 330 331 29 23 chr3 210301322 210301497 -17223081 + HAL1 LINE L1 1398 1573 -934 190 167 0 0 chr3 210301559 210301589 -17222989 + L2 LINE L2 2582 2611 -703 318 145 0 53 chr3 210301679 210301755 -17222823 + (TTCC)n Simple_repeat Simple_repeat 1 72 0 203 285 110 68 chr3 210301756 210301808 -17222770 + L2 LINE L2 2817 2865 -448 1994 132 14 7 chr3 210301808 210302104 -17222474 - AluSc SINE Alu -10 299 2 203 285 110 68 chr3 210302104 210302332 -17222246 + L2 LINE L2 2865 3109 -204 251 229 29 34 chr3 210302778 210302953 -17221625 + (TATAA)n Simple_repeat Simple_repeat 5 178 0 462 130 45 28 chr3 210302953 210303130 -17221448 + (TA)n Simple_repeat Simple_repeat 1 180 0 3671 179 17 22 chr3 210303424 210304191 -17220387 + L1MB7 LINE L1 5402 6164 -20 2406 58 18 12 chr3 210304191 210304521 -17220057 - L1PA7 LINE L1 -6 6148 5817 6066 183 9 38 chr3 210304655 210304995 -17219583 - LTR25-int LTR ERV1 -2218 4821 4473 2449 65 7 7 chr3 210304995 210305305 -17219273 + AluY SINE Alu 1 310 -1 6066 183 9 38 chr3 210305305 210306317 -17218261 - LTR25-int LTR ERV1 -2566 4473 3704 1957 96 6 25 chr3 210306317 210306631 -17217947 - AluY SINE Alu -1 310 3 6066 183 9 38 chr3 210306631 210306862 -17217716 - LTR25-int LTR ERV1 -3335 3704 3468 349 264 6 45 chr3 210306906 210307084 -17217494 - AluSg/x SINE Alu -21 281 111 45 19 0 0 chr3 210307202 210307254 -17217324 + AT_rich Low_complexity Low_complexity 1 52 0 317 62 73 57 chr3 210307254 210307431 -17217147 + (TA)n Simple_repeat Simple_repeat 1 180 0 72 23 0 0 chr3 210307431 210307517 -17217061 + AT_rich Low_complexity Low_complexity 1 86 0 188 97 97 18 chr3 210307517 210307620 -17216958 + (TA)n Simple_repeat Simple_repeat 2 116 -7 2162 111 0 3 chr3 210307620 210307909 -17216669 - AluSx SINE Alu -24 288 1 188 97 97 18 chr3 210307909 210307918 -17216660 + (TA)n Simple_repeat Simple_repeat 116 123 0 484 315 31 0 chr3 210307940 210308067 -17216511 + L2 LINE L2 3141 3271 -1 212 337 0 0 chr3 210309671 210309766 -17214812 + CT-rich Low_complexity Low_complexity 1 95 0 218 111 32 32 chr3 210309850 210309913 -17214665 + (TA)n Simple_repeat Simple_repeat 1 63 0 534 230 35 63 chr3 210310542 210310716 -17213862 - L2 LINE L2 -23 3290 3122 1911 122 30 46 chr3 210311337 210311641 -17212937 + AluSq SINE Alu 9 307 -6 625 209 30 0 chr3 210312043 210312177 -17212401 - L1ME2 LINE L1 -6 6158 6021 445 179 48 220 chr3 210312636 210312726 -17211852 - L2 LINE L2 0 3313 3209 261 100 0 0 chr3 210312726 210312766 -17211812 + tRNA-Cys-TGC tRNA tRNA 1 40 -35 445 179 48 220 chr3 210312766 210312972 -17211606 - L2 LINE L2 -104 3209 3036 21 57 0 0 chr3 210313023 210313058 -17211520 + AT_rich Low_complexity Low_complexity 1 35 0 307 290 197 40 chr3 210313141 210313347 -17211231 - L2 LINE L2 -276 3037 2776 25 51 0 0 chr3 210313386 210313425 -17211153 + AT_rich Low_complexity Low_complexity 1 39 0 2523 205 59 3 chr3 210313556 210314165 -17210413 - L1MD3 LINE L1 -5 7990 7348 678 259 114 35 chr3 210314177 210314405 -17210173 - L2 LINE L2 -561 2753 2508 23 78 0 0 chr3 210314730 210314781 -17209797 + AT_rich Low_complexity Low_complexity 1 51 0 1481 152 9 82 chr3 210315622 210315704 -17208874 + LTR25-int LTR ERV1 3166 3252 -3744 2195 79 4 0 chr3 210315704 210315982 -17208596 + AluSc SINE Alu 1 279 -30 1481 152 9 82 chr3 210315982 210316227 -17208351 + LTR25-int LTR ERV1 3252 3469 -3527 2503 37 0 52 chr3 210316234 210316558 -17208020 + AluY SINE Alu 2 308 -3 211 348 44 59 chr3 210316806 210316941 -17207637 - MIR3 SINE MIR -64 144 12 351 264 43 120 chr3 210317125 210317333 -17207245 - L2 LINE L2 -50 3222 3031 675 203 83 83 chr3 210319196 210319329 -17205249 + MIR SINE MIR 18 153 -109 2410 81 0 7 chr3 210319329 210319637 -17204941 + AluY SINE Alu 1 306 -5 675 203 83 83 chr3 210319637 210319720 -17204858 + MIR SINE MIR 152 234 -28 304 265 51 0 chr3 210320718 210320816 -17203762 + L1ME4a LINE L1 5998 6100 -21 2265 96 0 10 chr3 210322109 210322411 -17202167 - AluSg SINE Alu -11 299 1 379 238 79 6 chr3 210322411 210322575 -17202003 - L1P5 LINE L1 -711 5440 5265 727 294 122 42 chr3 210322991 210323467 -17201111 - L3 LINE CR1 -20 1557 1044 515 281 59 45 chr3 210324147 210324368 -17200210 - MIR SINE MIR -35 227 4 318 50 0 0 chr3 210324968 210325008 -17199570 + (CAAA)n Simple_repeat Simple_repeat 1 40 0 291 28 0 0 chr3 210325203 210325239 -17199339 + (TG)n Simple_repeat Simple_repeat 1 36 0 438 114 0 0 chr3 210325239 210325309 -17199269 + (GA)n Simple_repeat Simple_repeat 2 71 0 234 0 0 0 chr3 210326125 210326151 -17198427 + (CA)n Simple_repeat Simple_repeat 2 27 0 1550 129 0 13 chr3 210326945 210327169 -17197409 - AluSx SINE Alu -91 221 1 253 290 36 31 chr3 210327183 210327376 -17197202 + L1ME LINE L1 5710 5903 -218 216 158 0 0 chr3 210328386 210328424 -17196154 + (TG)n Simple_repeat Simple_repeat 2 39 0 246 32 0 0 chr3 210329269 210329300 -17195278 + (CCA)n Simple_repeat Simple_repeat 2 32 0 358 230 95 56 chr3 210330213 210330339 -17194239 + L2 LINE L2 3181 3311 -2 34 55 0 0 chr3 210330627 210330682 -17193896 + AT_rich Low_complexity Low_complexity 1 55 0 460 335 112 19 chr3 210331226 210331441 -17193137 + MIR SINE MIR 18 252 -10 206 310 0 14 chr3 210331607 210331678 -17192900 + T-rich Low_complexity Low_complexity 1 70 0 448 310 78 94 chr3 210331832 210332193 -17192385 + L2 LINE L2 2900 3254 -18 678 44 11 0 chr3 210332462 210332552 -17192026 + L1MA1 LINE L1 6212 6302 0 754 244 37 18 chr3 210334646 210334863 -17189715 - MLT1J LTR MaLR -290 221 1 357 226 29 39 chr3 210335289 210335391 -17189187 - MIR SINE MIR -26 236 136 31 0 0 0 chr3 210335410 210335441 -17189137 + AT_rich Low_complexity Low_complexity 1 31 0 25 0 0 0 chr3 210335916 210335941 -17188637 + AT_rich Low_complexity Low_complexity 1 25 0 216 0 0 0 chr3 210336092 210336116 -17188462 + (TA)n Simple_repeat Simple_repeat 1 24 0 22 77 0 0 chr3 210336127 210336153 -17188425 + AT_rich Low_complexity Low_complexity 1 26 0 648 262 131 5 chr3 210336428 210336649 -17187929 + MIR SINE MIR 14 262 0 817 219 0 48 chr3 210336681 210336868 -17187710 + MIR SINE MIR 19 196 -66 1673 120 15 19 chr3 210336887 210337153 -17187425 + MER1B DNA MER1_type 75 339 0 263 254 28 14 chr3 210337153 210337224 -17187354 + MIR SINE MIR 191 262 0 843 113 8 8 chr3 210337621 210337754 -17186824 - MER57A LTR ERV1 -270 133 1 417 88 39 118 chr3 210337789 210337891 -17186687 - MER57A-int LTR ERV1 -27 7510 7417 329 119 136 153 chr3 210337893 210338011 -17186567 - LTR54B LTR ERV1 -169 329 185 655 134 67 0 chr3 210338056 210338175 -17186403 - LTR54B LTR ERV1 -371 127 1 3800 186 20 12 chr3 210338175 210338939 -17185639 - MER57A-int LTR ERV1 -393 7144 6375 1704 184 13 7 chr3 210339177 210339482 -17185096 - AluJo SINE Alu -5 307 1 24 0 0 0 chr3 210339631 210339655 -17184923 + GC_rich Low_complexity Low_complexity 1 24 0 1620 193 25 25 chr3 210340027 210340389 -17184189 - MLT1A1 LTR MaLR 0 365 4 198 137 20 20 chr3 210340844 210340895 -17183683 + GA-rich Low_complexity Low_complexity 2 52 0 5391 107 27 19 chr3 210341243 210342249 -17182329 + L1PA16 LINE L1 5146 6157 -9 281 160 0 0 chr3 210342273 210342323 -17182255 + GA-rich Low_complexity Low_complexity 1 50 0 29 90 0 0 chr3 210542591 210542669 -16981909 + GC_rich Low_complexity Low_complexity 1 78 0 214 276 0 0 chr3 210543040 210543098 -16981480 - L2 LINE L2 0 3272 3215 2281 66 10 17 chr3 210543150 210543451 -16981127 + AluSc SINE Alu 1 299 -10 2372 68 7 3 chr3 210543618 210543926 -16980652 + AluSc SINE Alu 1 309 0 1998 102 13 25 chr3 210544144 210544458 -16980120 + AluY SINE Alu 1 310 -1 1887 145 7 0 chr3 210544460 210544776 -16979802 + AluSx SINE Alu 4 312 0 2325 83 0 7 chr3 210544856 210545158 -16979420 + AluSp SINE Alu 1 300 -13 912 185 0 0 chr3 210546353 210546499 -16978079 + FRAM SINE Alu 9 154 -22 1882 96 41 4 chr3 210546518 210546809 -16977769 + AluSc SINE Alu 1 301 0 1595 172 20 17 chr3 210546809 210547106 -16977472 + AluJo SINE Alu 2 299 -13 1955 98 7 18 chr3 210547503 210547637 -16976941 + AluSx SINE Alu 1 135 -170 2446 78 0 0 chr3 210547637 210547943 -16976635 + AluY SINE Alu 2 307 -4 1955 98 7 18 chr3 210547943 210548116 -16976462 + AluSx SINE Alu 135 305 0 2098 119 37 0 chr3 210550164 210550459 -16974119 + AluSc SINE Alu 1 306 -3 248 276 0 0 chr3 210550937 210550995 -16973583 + CT-rich Low_complexity Low_complexity 5 62 0 688 276 14 105 chr3 210551772 210551901 -16972677 - MIR SINE MIR 0 262 172 2263 82 0 0 chr3 210551901 210552183 -16972395 - AluSc SINE Alu -12 297 16 688 276 14 105 chr3 210552183 210552339 -16972239 - MIR SINE MIR -90 172 3 1800 138 7 17 chr3 210552504 210552802 -16971776 - AluJb SINE Alu -17 295 1 410 311 70 51 chr3 210553056 210553374 -16971204 - L1 LINE L1 -2863 3985 1703 1019 147 56 0 chr3 210553533 210553731 -16970847 - MER2 DNA MER2_type -136 209 1 1238 145 11 60 chr3 210553731 210554000 -16970578 + L1MB4 LINE L1 5785 6040 -140 1850 77 0 0 chr3 210554000 210554234 -16970344 - AluSg1 SINE Alu -75 234 1 361 263 178 7 chr3 210554741 210554893 -16969685 - MIR SINE MIR -17 245 68 2144 123 13 0 chr3 210555465 210555773 -16968805 - AluSx SINE Alu 0 312 1 332 278 139 58 chr3 210556012 210556235 -16968343 + L1ME4a LINE L1 5880 6120 -1 1902 127 17 3 chr3 210556723 210557015 -16967563 + AluSx SINE Alu 7 302 -10 2241 93 0 7 chr3 210557023 210557323 -16967255 + AluSx SINE Alu 1 298 -14 2184 118 3 0 chr3 210557762 210558068 -16966510 - AluSg SINE Alu -3 307 1 200 213 64 0 chr3 210558774 210558821 -16965757 + L2 LINE L2 3025 3074 -239 198 0 0 0 chr3 210558842 210558864 -16965714 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 * 216 0 0 0 chr3 210558863 210558887 -16965691 + (TA)n Simple_repeat Simple_repeat 2 25 0 2219 98 0 3 chr3 210558887 210559182 -16965396 - AluSx SINE Alu -18 294 1 184 57 29 29 chr3 210559204 210559239 -16965339 + (TAAAA)n Simple_repeat Simple_repeat 2 36 0 765 220 24 76 chr3 210559245 210559449 -16965129 + L2 LINE L2 3073 3263 -50 2267 84 3 3 chr3 210559449 210559748 -16964830 + AluSp SINE Alu 1 299 -14 765 220 24 76 chr3 210559748 210559793 -16964785 + L2 LINE L2 3263 3309 -4 523 273 155 0 chr3 210559863 210560024 -16964554 + MER5A DNA MER1_type 4 189 0 758 153 0 49 chr3 210560037 210560181 -16964397 + FLAM_C SINE Alu 7 143 0 413 65 0 0 chr3 210560285 210560347 -16964231 + AluSp/q SINE Alu 242 303 0 2079 112 17 0 chr3 210561496 210561790 -16962788 - AluSx SINE Alu -13 299 1 2417 172 21 27 chr3 210562249 210562425 -16962153 - MER41D LTR ERV1 0 557 381 2251 99 6 6 chr3 210562425 210562737 -16961841 - AluSx SINE Alu 0 312 1 2417 172 21 27 chr3 210562737 210563042 -16961536 - MER41D LTR ERV1 -176 381 76 2163 75 0 27 chr3 210563042 210563373 -16961205 - AluSq SINE Alu 0 323 1 2417 172 21 27 chr3 210563373 210563400 -16961178 - MER41D LTR ERV1 -481 76 50 2038 70 4 7 chr3 210563401 210563672 -16960906 - AluSq SINE Alu -4 309 40 260 315 98 28 chr3 210563760 210563903 -16960675 - Tigger8 DNA MER2_type -436 230 78 196 326 269 0 chr3 210565150 210565291 -16959287 - MIR SINE MIR -30 232 54 863 174 0 0 chr3 210565743 210565875 -16958703 + FLAM_C SINE Alu 1 132 -1 292 74 0 37 chr3 210565875 210565929 -16958649 + (GGGAA)n Simple_repeat Simple_repeat 1 52 0 368 335 68 68 chr3 210565996 210566217 -16958361 - L1MEc LINE L1 -2839 3376 2019 448 354 19 0 chr3 210567409 210567570 -16957008 + MIR SINE MIR 79 242 -20 1146 112 0 4 chr3 210568166 210568414 -16956164 + (TGGA)n Simple_repeat Simple_repeat 1 248 0 180 286 29 29 chr3 210568459 210568529 -16956049 + L2 LINE L2 3197 3266 -6 477 244 79 24 chr3 210568832 210568996 -16955582 - MIR SINE MIR -54 208 36 407 329 41 7 chr3 210570623 210570769 -16953809 - MIR3 SINE MIR -31 177 27 2299 90 7 0 chr3 210570943 210571253 -16953325 - AluSp SINE Alu -1 312 1 308 349 8 24 chr3 210572209 210572335 -16952243 + MIR SINE MIR 20 143 -119 194 388 0 12 chr3 210572456 210572536 -16952042 + L2 LINE L2 3133 3211 -61 2366 84 0 0 chr3 210572565 210572863 -16951715 + AluSc SINE Alu 2 299 -10 204 244 0 0 chr3 210572867 210572912 -16951666 + (TGAA)n Simple_repeat Simple_repeat 3 47 0 922 236 21 21 chr3 210574373 210574606 -16949972 + MIR SINE MIR 18 250 -12 779 285 5 0 chr3 210575491 210575677 -16948901 + MIR SINE MIR 61 247 -15 25 75 0 0 chr3 210575781 210575834 -16948744 + GC_rich Low_complexity Low_complexity 1 53 0 251 259 36 29 chr3 210576038 210576177 -16948401 + (CCCG)n Simple_repeat Simple_repeat 3 142 0 25 0 0 0 chr3 210576234 210576259 -16948319 + GC_rich Low_complexity Low_complexity 1 25 0 187 164 10 48 chr3 210576357 210576461 -16948117 + G-rich Low_complexity Low_complexity 2 101 0 24 0 0 0 chr3 210576497 210576521 -16948057 + GC_rich Low_complexity Low_complexity 1 24 0 497 228 13 67 chr3 210576708 210576781 -16947797 + MIR SINE MIR 117 180 -82 2010 124 7 13 chr3 210576781 210576916 -16947662 + AluSx SINE Alu 1 135 -177 2162 110 7 3 chr3 210576916 210577225 -16947353 + AluSp SINE Alu 1 310 -3 2010 124 7 13 chr3 210577225 210577387 -16947191 + AluSx SINE Alu 135 296 -16 497 228 13 67 chr3 210577387 210577462 -16947116 + MIR SINE MIR 180 257 -5 888 144 0 8 chr3 210577562 210577694 -16946884 - FLAM_C SINE Alu -2 131 1 753 349 101 15 chr3 210577895 210578479 -16946099 + L2 LINE L2 1845 2478 -836 215 313 125 0 chr3 210578647 210578759 -16945819 - L2 LINE L2 0 3313 3188 714 276 121 5 chr3 210579105 210579241 -16945337 - L1M4 LINE L1 -1945 4201 4082 2209 122 0 0 chr3 210579241 210579545 -16945033 + AluSx SINE Alu 1 304 -8 714 276 121 5 chr3 210579545 210579847 -16944731 - L1M4 LINE L1 -2064 4082 3712 1050 163 0 0 chr3 210579894 210580086 -16944492 + AluJb SINE Alu 120 311 0 752 250 6 6 chr3 210580088 210580264 -16944314 - MLT1F LTR MaLR -366 176 1 1698 121 72 17 chr3 210580347 210580484 -16944094 + AluSx SINE Alu 1 129 -183 2303 91 0 0 chr3 210580484 210580791 -16943787 + AluSc SINE Alu 1 307 -2 1698 121 72 17 chr3 210580791 210580943 -16943635 + AluSx SINE Alu 129 306 -6 336 261 228 43 chr3 210581098 210581309 -16943269 - HAL1 LINE L1 -853 1654 1405 299 282 107 39 chr3 210581314 210581623 -16942955 - L1MEd LINE L1 -4922 1197 868 907 153 0 0 chr3 210581794 210581925 -16942653 - FLAM_C SINE Alu -2 131 1 27 87 0 0 chr3 210583949 210584018 -16940560 + GC_rich Low_complexity Low_complexity 1 69 0 231 279 45 54 chr3 210584583 210584694 -16939884 - L2 LINE L2 -15 3257 3148 219 252 20 37 chr3 210585638 210585909 -16938669 + CT-rich Low_complexity Low_complexity 1 266 0 2337 60 20 3 chr3 210589242 210589542 -16935036 - AluSp SINE Alu -8 305 1 661 266 64 16 chr3 210590574 210590762 -16933816 - MIR SINE MIR -46 216 20 272 267 12 12 chr3 210591153 210591239 -16933339 + C-rich Low_complexity Low_complexity 4 89 0 616 205 16 8 chr3 210594227 210594349 -16930229 + FLAM_A SINE Alu 4 126 -7 1497 102 0 14 chr3 210594349 210594565 -16930013 - AluSc SINE Alu -10 299 87 25 51 0 0 chr3 210594589 210594628 -16929950 + AT_rich Low_complexity Low_complexity 1 39 0 211 316 226 11 chr3 210595043 210595233 -16929345 + L3b LINE CR1 1145 1375 -208 1698 145 52 14 chr3 210595285 210595574 -16929004 - AluJo SINE Alu -10 302 3 23 0 0 0 chr3 210597534 210597557 -16927021 + AT_rich Low_complexity Low_complexity 1 23 0 249 338 26 0 chr3 210599413 210599490 -16925088 + MIR SINE MIR 80 158 -104 2381 59 3 0 chr3 210599515 210599802 -16924776 + AluSp SINE Alu 5 292 -21 730 292 10 40 chr3 210599832 210600034 -16924544 + MER91A DNA MER1_type 1 196 0 189 0 0 0 chr3 210600652 210600673 -16923905 + (T)n Simple_repeat Simple_repeat 1 21 0 2212 109 0 6 chr3 210601190 210601501 -16923077 + AluSg SINE Alu 1 309 -1 321 352 64 34 chr3 210602862 210603160 -16921418 + L2 LINE L2 2988 3294 -19 2294 84 0 22 chr3 210603169 210603480 -16921098 + AluSg SINE Alu 1 304 -6 2040 112 0 38 chr3 210603491 210603804 -16920774 + AluSx SINE Alu 1 301 -11 2289 82 3 16 chr3 210604035 210604352 -16920226 + AluSp SINE Alu 1 313 0 21 36 0 0 chr3 210605116 210605144 -16919434 + GC_rich Low_complexity Low_complexity 1 28 0 386 338 189 40 chr3 210610033 210611088 -16913490 + L2 LINE L2 1765 2976 -338 326 311 91 15 chr3 210611276 210611408 -16913170 + MIR SINE MIR 82 223 -39 322 236 108 61 chr3 210612593 210612741 -16911837 - L2 LINE L2 -3 3310 3156 2222 96 7 0 chr3 210612760 210613062 -16911516 + AluSx SINE Alu 9 312 0 315 240 153 13 chr3 210613331 210613399 -16911179 + MER104 DNA Tc2 7 64 -1834 2020 98 0 7 chr3 210613399 210613673 -16910905 - AluSx SINE Alu -16 296 25 315 240 153 13 chr3 210613673 210613754 -16910824 + MER104 DNA Tc2 64 177 -3 2163 98 10 0 chr3 210614146 210614441 -16910137 - AluSg SINE Alu -12 298 1 219 266 114 13 chr3 210614476 210614555 -16910023 + L2 LINE L2 3227 3313 0 2009 92 26 42 chr3 210615384 210615690 -16908888 - AluSq SINE Alu -12 301 1 728 237 112 0 chr3 210617396 210617620 -16906958 - MER58 DNA MER1_type -2144 276 28 288 0 0 0 chr3 210617622 210617654 -16906924 + (TG)n Simple_repeat Simple_repeat 2 33 0 2013 109 27 17 chr3 210619027 210619321 -16905257 + AluSx SINE Alu 1 297 -15 23 0 0 0 chr3 210621431 210621454 -16903124 + AT_rich Low_complexity Low_complexity 1 23 0 291 122 0 0 chr3 210621787 210621836 -16902742 + (TTC)n Simple_repeat Simple_repeat 1 49 0 489 17 0 0 chr3 210624309 210624367 -16900211 + (CA)n Simple_repeat Simple_repeat 2 59 0 1004 185 0 0 chr3 210624705 210624862 -16899716 - FRAM SINE Alu -5 161 5 1435 105 5 0 chr3 210624889 210625079 -16899499 + AluSx SINE Alu 1 191 -121 2378 95 0 13 chr3 210625213 210625529 -16899049 + AluSx SINE Alu 1 312 0 432 176 33 0 chr3 210625552 210625643 -16898935 + MIR SINE MIR 98 191 -71 2102 128 3 0 chr3 210625643 210625948 -16898630 + AluSx SINE Alu 1 306 -6 243 284 0 0 chr3 210625978 210626045 -16898533 - MLT1K LTR MaLR -1 587 521 398 288 76 23 chr3 210626603 210626735 -16897843 + L1ME4a LINE L1 5946 6084 -37 2172 101 3 0 chr3 210626736 210627034 -16897544 - AluSq SINE Alu -2 311 13 236 301 129 11 chr3 210627601 210627685 -16896893 + MIR SINE MIR 37 131 -77 759 250 56 60 chr3 210627685 210627756 -16896822 + MIR SINE MIR 4 74 -188 2110 112 0 3 chr3 210627756 210628051 -16896527 - AluSq SINE Alu -14 299 6 759 250 56 60 chr3 210628051 210628231 -16896347 + MIR SINE MIR 74 254 -8 2231 73 7 7 chr3 210629171 210629471 -16895107 + AluSp SINE Alu 1 300 -13 268 267 9 95 chr3 210630088 210630193 -16894385 + MIR SINE MIR 89 185 -23 243 341 0 11 chr3 210630443 210630544 -16894034 + G-rich Low_complexity Low_complexity 1 99 0 458 321 17 14 chr3 210630632 210630910 -16893668 + GA-rich Low_complexity Low_complexity 1 278 0 992 111 0 0 chr3 210630994 210631129 -16893449 - AluSq/x SINE Alu -177 135 1 265 111 67 0 chr3 210631129 210631174 -16893404 - MIR SINE MIR -96 166 119 757 253 6 6 chr3 210631389 210631563 -16893015 + AluJo SINE Alu 1 174 -138 491 316 127 46 chr3 210631590 210632022 -16892556 - L1M4c LINE L1 -1231 1512 956 263 139 12 47 chr3 210632319 210632405 -16892173 + G-rich Low_complexity Low_complexity 1 83 0 2184 122 0 0 chr3 210635343 210635655 -16888923 - AluSp SINE Alu 0 313 2 545 339 76 72 chr3 210636917 210637136 -16887442 + L3 LINE CR1 576 792 -785 2128 103 7 0 chr3 210637136 210637428 -16887150 + AluSq SINE Alu 5 298 -15 545 339 76 72 chr3 210637428 210637849 -16886729 + L3 LINE CR1 792 1219 -358 2279 103 0 0 chr3 210637971 210638273 -16886305 - AluSx SINE Alu -10 302 1 459 254 209 32 chr3 210638330 210638550 -16886028 + L3 LINE CR1 1315 1573 -4 580 340 47 5 chr3 210640944 210641159 -16883419 - MIR SINE MIR -38 224 1 1881 92 130 0 chr3 210641234 210641495 -16883083 + AluY SINE Alu 1 295 -6 1011 71 64 7 chr3 210641886 210642026 -16882552 + AluSp SINE Alu 1 148 -165 1910 99 4 0 chr3 210642026 210642279 -16882299 + AluSp SINE Alu 55 308 -5 377 316 19 0 chr3 210644252 210644407 -16880171 + L1ME4a LINE L1 5661 5818 -303 1903 145 3 14 chr3 210644429 210644726 -16879852 + AluY SINE Alu 1 286 -25 2309 80 40 3 chr3 210644726 210645025 -16879553 + AluSg SINE Alu 1 310 0 310 256 85 0 chr3 210645044 210645126 -16879452 + L1ME4a LINE L1 5966 6054 -67 715 239 130 38 chr3 210645128 210645360 -16879218 - MIR SINE MIR -1 261 5 1884 163 14 0 chr3 210645360 210645655 -16878923 - AluSq SINE Alu -14 299 1 1177 193 155 11 chr3 210645759 210646023 -16878555 + AluJb SINE Alu 1 302 0 335 265 42 127 chr3 210646033 210646190 -16878388 - L1ME4a LINE L1 -11 6110 5982 1842 183 20 0 chr3 210646190 210646496 -16878082 - AluJb SINE Alu 0 312 1 335 265 42 127 chr3 210646496 210646598 -16877980 - L1ME4a LINE L1 -139 5982 5873 2220 109 48 28 chr3 210646702 210647059 -16877519 + THE1B LTR MaLR 1 364 0 2603 64 0 0 chr3 210647236 210647534 -16877044 - AluY SINE Alu -13 298 1 2231 108 3 0 chr3 210647538 210647825 -16876753 - AluSx SINE Alu -24 288 1 1555 209 57 64 chr3 210647849 210648191 -16876387 - MLT1C LTR MaLR 0 467 124 993 128 94 179 chr3 210648191 210648337 -16876241 - AluSx SINE Alu 0 302 198 216 0 0 0 chr3 210648337 210648361 -16876217 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 993 128 94 179 chr3 210648361 210648543 -16876035 - AluSx SINE Alu -104 198 2 1555 209 57 64 chr3 210648543 210648601 -16875977 - MLT1C LTR MaLR -343 124 67 1899 153 10 10 chr3 210648601 210648895 -16875683 - AluJo SINE Alu -18 294 1 1555 209 57 64 chr3 210648895 210648963 -16875615 - MLT1C LTR MaLR -400 67 1 280 355 81 0 chr3 210649408 210649532 -16875046 - L3 LINE CR1 -50 1527 1394 1455 193 59 4 chr3 210649550 210649715 -16874863 - AluJo SINE Alu -15 297 110 186 43 0 0 chr3 210649715 210649738 -16874840 + (TTTA)n Simple_repeat Simple_repeat 1 23 0 1455 193 59 4 chr3 210649738 210649842 -16874736 - AluJo SINE Alu -202 110 13 1966 112 0 0 chr3 210649990 210650123 -16874455 + AluSg SINE Alu 1 136 -174 2296 97 0 10 chr3 210650123 210650434 -16874144 + AluSc SINE Alu 1 308 -1 1966 112 0 0 chr3 210650434 210650551 -16874027 + AluSg SINE Alu 135 251 -59 279 0 0 0 chr3 210650651 210650682 -16873896 + (CA)n Simple_repeat Simple_repeat 2 32 0 2567 53 0 3 chr3 210651136 210651435 -16873143 + AluY SINE Alu 1 298 -13 503 278 118 16 chr3 210651447 210651634 -16872944 - MIR SINE MIR -28 234 29 2803 13 0 10 chr3 210651894 210652201 -16872377 - AluYa5 SINE Alu -7 304 1 1938 149 0 32 chr3 210652205 210652514 -16872064 - AluJb SINE Alu -13 299 1 2345 103 10 7 chr3 210653369 210653679 -16870899 + AluSx SINE Alu 1 311 -1 778 254 17 6 chr3 210654214 210654395 -16870183 + MIR SINE MIR 2 184 -78 2270 119 7 0 chr3 210654552 210654855 -16869723 - AluSx SINE Alu -5 307 3 202 240 82 106 chr3 210655198 210655406 -16869172 - L2 LINE L2 -93 3179 2977 852 172 13 6 chr3 210655490 210655647 -16868931 + MER90 LTR ERV1 1 158 -417 791 172 25 6 chr3 210655638 210655795 -16868783 + MER90 LTR ERV1 455 614 0 * 460 296 17 40 chr3 210655802 210655978 -16868600 - L2 LINE L2 -274 3039 2868 2336 106 0 3 chr3 210656093 210656405 -16868173 + AluSx SINE Alu 1 311 -1 804 110 37 27 chr3 210656957 210657422 -16867156 + (CA)n Simple_repeat Simple_repeat 1 469 0 226 377 9 18 chr3 210657701 210657815 -16866763 - L2 LINE L2 -520 2794 2682 1340 289 130 28 chr3 210657815 210658501 -16866077 + HAL1 LINE L1 10 765 -1742 354 241 0 164 chr3 210658537 210658699 -16865879 + HAL1 LINE L1 2344 2470 -37 2318 112 3 0 chr3 210658699 210659004 -16865574 + AluSx SINE Alu 1 306 -6 354 241 0 164 chr3 210659004 210659036 -16865542 + HAL1 LINE L1 2470 2506 -1 1711 209 128 29 chr3 210659203 210659631 -16864947 + MLT2B2 LTR ERVL 1 453 -67 2308 101 0 0 chr3 210659631 210659917 -16864661 + AluSg SINE Alu 1 286 -24 1711 209 128 29 chr3 210659917 210659993 -16864585 + MLT2B2 LTR ERVL 453 520 0 240 324 38 0 chr3 210659999 210660104 -16864474 - L2 LINE L2 -776 2538 2430 2490 77 3 0 chr3 210660653 210660953 -16863625 - AluSx SINE Alu -11 301 1 2476 44 10 14 chr3 210662669 210662963 -16861615 + AluY SINE Alu 1 293 -18 1767 182 3 0 chr3 210663459 210663767 -16860811 + AluSc SINE Alu 1 309 0 1339 101 0 0 chr3 210663768 210663936 -16860642 + AluSg/x SINE Alu 136 303 -9 447 19 0 0 chr3 210663988 210664040 -16860538 + (TC)n Simple_repeat Simple_repeat 2 53 0 1353 142 19 19 chr3 210664145 210664350 -16860228 - AluJo SINE Alu -106 206 2 467 266 60 45 chr3 210664407 210664606 -16859972 - L1ME4a LINE L1 -224 5897 5696 535 242 57 108 chr3 210664608 210664766 -16859812 + MLT1H LTR MaLR 1 165 -384 2154 100 21 0 chr3 210664766 210665055 -16859523 + AluSp SINE Alu 1 295 -18 2636 50 0 0 chr3 210665063 210665360 -16859218 + AluY SINE Alu 1 297 -14 535 242 57 108 chr3 210665360 210665649 -16858929 + MLT1H LTR MaLR 172 547 -2 580 220 107 0 chr3 210665667 210665826 -16858752 - L1ME4a LINE L1 -456 5665 5490 2222 115 3 0 chr3 210665835 210666130 -16858448 - AluSx SINE Alu -16 296 1 241 228 22 43 chr3 210666325 210666417 -16858161 + GA-rich Low_complexity Low_complexity 3 92 0 1514 164 75 0 chr3 210666488 210666756 -16857822 + AluJo SINE Alu 1 288 -24 282 56 0 0 chr3 210666758 210666794 -16857784 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 233 286 133 19 chr3 210666999 210667104 -16857474 - L2 LINE L2 0 3272 3156 201 322 67 0 chr3 210667863 210667953 -16856625 - MIR SINE MIR -25 237 142 2277 92 7 23 chr3 210667953 210668257 -16856321 - AluSq SINE Alu -14 299 1 452 352 135 7 chr3 210668333 210668614 -16855964 - L2 LINE L2 -540 2774 2458 2348 85 0 7 chr3 210670580 210670886 -16853692 - AluSx SINE Alu -8 304 1 1069 103 0 0 chr3 210671219 210671365 -16853213 - AluSp/q SINE Alu -2 311 166 1392 26 0 0 chr3 210671484 210671636 -16852942 - AluSp SINE Alu -160 153 2 186 43 0 0 chr3 210671717 210671740 -16852838 + (TG)n Simple_repeat Simple_repeat 2 24 0 2337 115 0 0 chr3 210672149 210672454 -16852124 - AluSx SINE Alu -7 305 1 298 323 54 0 chr3 210672455 210672548 -16852030 + L2 LINE L2 3175 3272 0 189 0 0 0 chr3 210672551 210672572 -16852006 + (TGAA)n Simple_repeat Simple_repeat 2 22 0 1037 48 0 0 chr3 210672714 210672840 -16851738 - AluSg1 SINE Alu 0 310 185 583 119 0 0 chr3 210672840 210672924 -16851654 - AluSg1 SINE Alu -224 85 2 25 0 0 0 chr3 210672928 210672953 -16851625 + AT_rich Low_complexity Low_complexity 1 25 0 421 309 65 24 chr3 210673520 210673735 -16850843 + MIR SINE MIR 28 249 -13 408 261 116 29 chr3 210673991 210674129 -16850449 - MIR3 SINE MIR -14 194 45 1201 109 27 33 chr3 210674478 210674662 -16849916 - AluSg/x SINE Alu -13 299 117 310 261 61 35 chr3 210674993 210675108 -16849470 - L2 LINE L2 0 3272 3155 283 284 92 18 chr3 210676909 210677018 -16847560 - L2 LINE L2 0 3313 3197 201 322 67 0 chr3 210677777 210677867 -16846711 - MIR SINE MIR -25 237 142 2277 92 7 23 chr3 210677867 210678171 -16846407 - AluSq SINE Alu -14 299 1 452 352 135 7 chr3 210678247 210678528 -16846050 - L2 LINE L2 -540 2774 2458 2279 98 0 7 chr3 210680493 210680799 -16843779 - AluSx SINE Alu -8 304 1 564 152 61 0 chr3 210680816 210680915 -16843663 - FLAM_C SINE Alu -25 118 14 257 225 146 0 chr3 210680986 210681075 -16843503 + Charlie7 DNA MER1_type 2511 2612 0 22 35 0 0 chr3 210684109 210684138 -16840440 + GC_rich Low_complexity Low_complexity 1 29 0 2243 109 3 7 chr3 210684780 210685082 -16839496 - AluSx SINE Alu -11 301 1 2048 155 0 0 chr3 210685309 210685606 -16838972 + AluJb SINE Alu 1 297 -15 2286 84 40 3 chr3 210685606 210685905 -16838673 + AluSg SINE Alu 1 310 0 22 0 0 0 chr3 210685949 210685971 -16838607 + AT_rich Low_complexity Low_complexity 1 22 0 717 237 134 35 chr3 210686008 210686240 -16838338 - MIR SINE MIR -1 261 7 2339 98 10 0 chr3 210686240 210686536 -16838042 - AluSq SINE Alu -14 299 1 1086 46 17 23 chr3 210686548 210686721 -16837857 + (GAAA)n Simple_repeat Simple_repeat 1 172 0 256 206 31 31 chr3 210687269 210687366 -16837212 + (TG)n Simple_repeat Simple_repeat 1 97 0 244 238 0 49 chr3 210687828 210687950 -16836628 + G-rich Low_complexity Low_complexity 3 118 0 190 300 0 0 chr3 210689340 210689390 -16835188 + L2 LINE L2 3200 3249 -23 330 194 0 0 chr3 210690527 210690594 -16833984 + CT-rich Low_complexity Low_complexity 4 70 0 269 346 11 61 chr3 210690765 210690868 -16833710 - L2 LINE L2 -208 3064 2957 2465 93 0 0 chr3 210690868 210691179 -16833399 + AluSx SINE Alu 1 311 -1 269 346 11 61 chr3 210691179 210691214 -16833364 - L2 LINE L2 -315 2957 2922 2274 114 0 3 chr3 210691214 210691513 -16833065 + AluSx SINE Alu 1 298 -14 269 346 11 61 chr3 210691513 210691636 -16832942 - L2 LINE L2 -350 2922 2815 423 260 171 0 chr3 210692039 210692185 -16832393 + MIR SINE MIR 1 171 -91 871 118 63 0 chr3 210692409 210692536 -16832042 + AluSq/x SINE Alu 1 135 -177 2466 106 0 0 chr3 210692537 210692849 -16831729 + AluSx SINE Alu 1 312 0 235 169 197 0 chr3 210692988 210693059 -16831519 - L2 LINE L2 -2 3270 3186 2313 102 0 0 chr3 210693657 210693960 -16830618 + AluSx SINE Alu 1 303 -9 516 238 16 16 chr3 210694346 210694472 -16830106 - L2 LINE L2 -6 3266 3141 268 362 58 40 chr3 210694515 210694739 -16829839 + MIR SINE MIR 25 252 -10 238 270 118 99 chr3 210694963 210695115 -16829463 - L2 LINE L2 -3 3310 3156 2676 64 0 3 chr3 210695119 210695432 -16829146 + AluSx SINE Alu 1 312 0 2317 98 3 0 chr3 210696101 210696408 -16828170 + AluSq SINE Alu 1 308 -5 644 290 81 23 chr3 210697530 210697751 -16826827 + MIR SINE MIR 9 242 -20 340 293 109 46 chr3 210697944 210698361 -16826217 - L2 LINE L2 -213 3059 2616 2043 115 24 3 chr3 210698361 210698656 -16825922 + AluSq SINE Alu 1 301 -12 420 177 38 0 chr3 210698668 210698747 -16825831 + AluJ/FLAM SINE Alu 3 84 -228 2268 76 0 10 chr3 210698831 210699133 -16825445 + AluY SINE Alu 1 299 -12 262 312 11 0 chr3 210699141 210699234 -16825344 - L2 LINE L2 -797 2517 2424 1890 139 0 10 chr3 210699249 210699543 -16825035 + AluJb SINE Alu 1 291 -21 2437 68 0 3 chr3 210699867 210700178 -16824400 + AluSg SINE Alu 1 310 0 276 264 7 68 chr3 210700300 210700448 -16824130 + L1ME4a LINE L1 5644 5782 -339 279 268 161 5 chr3 210700478 210700702 -16823876 + L1ME4a LINE L1 5862 6120 -1 2223 95 0 0 chr3 210700713 210701008 -16823570 + AluSg SINE Alu 1 295 -15 23 0 0 0 chr3 210701017 210701040 -16823538 + AT_rich Low_complexity Low_complexity 1 23 0 570 256 143 13 chr3 210701735 210701965 -16822613 + MIR SINE MIR 2 261 -1 194 231 0 19 chr3 210701977 210702029 -16822549 - MIR SINE MIR -66 142 92 213 172 17 35 chr3 210702523 210702581 -16821997 + (CTGGGG)n Simple_repeat Simple_repeat 2 58 0 1019 91 13 0 chr3 210704928 210705082 -16819496 - L1M3 LINE L1 -430 5750 5595 374 272 52 38 chr3 210705135 210705348 -16819230 - L1MC5 LINE L1 -435 7526 7311 1693 162 0 45 chr3 210705425 210705733 -16818845 - AluJb SINE Alu -17 295 2 886 190 0 0 chr3 210705837 210706000 -16818578 - AluJb SINE Alu -1 311 149 466 169 0 0 chr3 210706007 210706078 -16818500 - AluSc SINE Alu -62 247 177 516 240 62 0 chr3 210706087 210706216 -16818362 - MIR SINE MIR -73 189 53 234 286 143 9 chr3 210706439 210706544 -16818034 - MER5B DNA MER1_type -35 143 25 2260 96 3 10 chr3 210706688 210707001 -16817577 + AluSx SINE Alu 2 312 0 276 264 7 68 chr3 210707123 210707271 -16817307 + L1ME4a LINE L1 5644 5782 -339 279 268 161 5 chr3 210707301 210707525 -16817053 + L1ME4a LINE L1 5862 6120 -1 2223 95 0 0 chr3 210707536 210707831 -16816747 + AluSg SINE Alu 1 295 -15 23 0 0 0 chr3 210707840 210707863 -16816715 + AT_rich Low_complexity Low_complexity 1 23 0 570 256 143 13 chr3 210708558 210708788 -16815790 + MIR SINE MIR 2 261 -1 194 231 0 19 chr3 210708800 210708852 -16815726 - MIR SINE MIR -66 142 92 213 172 17 35 chr3 210709346 210709404 -16815174 + (CTGGGG)n Simple_repeat Simple_repeat 2 58 0 247 286 0 0 chr3 210711731 210711794 -16812784 - L2 LINE L2 0 3313 3251 212 240 0 20 chr3 210712281 210712331 -16812247 - L2 LINE L2 -12 3260 3212 192 182 0 0 chr3 210712333 210712377 -16812201 + (TTCA)n Simple_repeat Simple_repeat 4 47 0 812 151 16 0 chr3 210712449 210712575 -16812003 + FLAM_A SINE Alu 5 132 -1 247 311 23 3 chr3 210712729 210712833 -16811745 + MIR SINE MIR 38 146 -63 1192 110 93 0 chr3 210712867 210713049 -16811529 - AluSg/x SINE Alu -9 303 105 1742 156 9 25 chr3 210713186 210713207 -16811371 - AluSx SINE Alu -2 310 290 462 36 0 0 chr3 210713207 210713263 -16811315 + (TC)n Simple_repeat Simple_repeat 2 57 0 1742 156 9 25 chr3 210713263 210713556 -16811022 - AluSx SINE Alu -22 290 1 320 191 21 101 chr3 210714584 210714772 -16809806 + (CAGAGA)n Simple_repeat Simple_repeat 3 175 0 310 113 14 14 chr3 210715355 210715426 -16809152 + (CCCCCG)n Simple_repeat Simple_repeat 5 75 0 223 98 0 82 chr3 210715556 210715617 -16808961 + (CCCCG)n Simple_repeat Simple_repeat 3 58 0 43 99 0 0 chr3 210716741 210716882 -16807696 + GC_rich Low_complexity Low_complexity 1 141 0 208 196 39 0 chr3 210717039 210717090 -16807488 + (CCCCG)n Simple_repeat Simple_repeat 1 53 0 338 257 68 30 chr3 210719549 210719652 -16804926 + MIR SINE MIR 2 107 -102 1877 134 7 3 chr3 210719668 210719967 -16804611 - AluSx SINE Alu -10 302 3 322 275 84 0 chr3 210719967 210720098 -16804480 - HAL1 LINE L1 -611 1896 1755 636 232 94 0 chr3 210720130 210720268 -16804310 - FRAM SINE Alu -28 148 1 644 182 38 63 chr3 210720325 210720484 -16804094 + AluSq SINE Alu 85 239 -74 562 169 128 27 chr3 210720604 210720752 -16803826 - AluY SINE Alu -146 165 3 2337 81 3 7 chr3 210720754 210721063 -16803515 - AluY SINE Alu -3 308 1 922 251 103 52 chr3 210721184 210721383 -16803195 - HAL1 LINE L1 -183 2324 2137 2096 102 10 13 chr3 210721383 210721687 -16802891 - AluSc SINE Alu 0 309 7 922 251 103 52 chr3 210721687 210721897 -16802681 - HAL1 LINE L1 -370 2137 1878 2229 91 7 0 chr3 210721897 210722195 -16802383 - AluSx SINE Alu -10 302 3 922 251 103 52 chr3 210722195 210722327 -16802251 - HAL1 LINE L1 -629 1878 1754 748 205 83 19 chr3 210722337 210722493 -16802085 - FRAM SINE Alu 0 166 1 1108 177 9 26 chr3 210722553 210722779 -16801799 + AluY SINE Alu 83 304 -7 1918 122 0 7 chr3 210722922 210723028 -16801550 + AluSg SINE Alu 28 133 -177 2280 97 3 0 chr3 210723028 210723336 -16801242 + AluSc SINE Alu 1 309 0 1918 122 0 7 chr3 210723336 210723507 -16801071 + AluSg SINE Alu 133 303 -7 210 91 0 0 chr3 210723557 210723590 -16800988 + (TC)n Simple_repeat Simple_repeat 1 33 0 1438 179 19 32 chr3 210723590 210723902 -16800676 - AluSx SINE Alu -1 311 4 1424 202 25 17 chr3 210724040 210724397 -16800181 + L1MC3 LINE L1 6098 6457 -1328 2068 130 0 0 chr3 210724406 210724706 -16799872 - AluSx SINE Alu -12 300 1 396 272 95 48 chr3 210724706 210724825 -16799753 + L1M4 LINE L1 4321 4450 -1696 1933 114 28 7 chr3 210724825 210725114 -16799464 + AluSx SINE Alu 1 295 -17 396 272 95 48 chr3 210725114 210725141 -16799437 + L1M4 LINE L1 4450 4474 -1672 372 278 98 84 chr3 210725193 210725423 -16799155 + L1M4 LINE L1 4487 4712 -1434 2172 103 0 31 chr3 210725423 210725744 -16798834 + AluSx SINE Alu 1 311 -1 372 278 98 84 chr3 210725744 210725804 -16798774 + L1M4 LINE L1 4712 4770 -1376 1932 130 7 13 chr3 210725804 210726104 -16798474 + AluSx SINE Alu 3 300 -12 372 278 98 84 chr3 210726104 210726498 -16798080 + L1M4 LINE L1 4770 5181 -965 * 2088 150 59 3 chr3 210726484 210726858 -16797720 + L1MC4 LINE L1 7284 7678 -364 220 26 26 26 chr3 210726864 210726902 -16797676 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 1741 132 34 0 chr3 210726936 210727202 -16797376 - AluSx SINE Alu -37 275 1 600 228 0 0 chr3 210727230 210727331 -16797247 + FRAM SINE Alu 1 101 -75 1059 90 0 0 chr3 210727373 210727517 -16797061 - AluYa5 SINE Alu -4 307 164 650 245 40 20 chr3 210727549 210727749 -16796829 - L1MC4 LINE L1 -137 7905 7702 2107 92 0 0 chr3 210727767 210728039 -16796539 + AluSc SINE Alu 1 272 -37 297 0 0 0 chr3 210728041 210728074 -16796504 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 705 108 0 31 chr3 210728093 210728334 -16796244 + AluSx SINE Alu 18 297 -15 1350 209 20 17 chr3 210728339 210728636 -16795942 + AluJo SINE Alu 1 298 -14 1458 236 99 8 chr3 210728645 210729030 -16795548 - L1MC4 LINE L1 -386 7656 7237 349 181 12 0 chr3 210729032 210729115 -16795463 - L1MC4 LINE L1 -956 7086 7003 385 319 0 0 chr3 210729124 210729215 -16795363 + L1MC4 LINE L1 6614 6704 -1338 * 409 286 0 11 chr3 210729140 210729231 -16795347 - L1MC4 LINE L1 -1339 6703 6614 * 411 232 16 10 chr3 210729207 210729352 -16795226 - L1MCa LINE L1 -1339 6983 1995 2019 142 3 0 chr3 210729352 210729661 -16794917 - AluSq SINE Alu -3 310 1 761 194 50 0 chr3 210729667 210729827 -16794751 - L1MC4 LINE L1 -420 7622 7455 811 143 7 36 chr3 210729895 210730035 -16794543 - AluJb SINE Alu -175 137 2 1653 169 14 7 chr3 210730036 210730331 -16794247 - AluJo SINE Alu -15 297 1 1045 101 0 0 chr3 210730440 210730588 -16793990 + AluY SINE Alu 156 303 -8 513 267 52 31 chr3 210731072 210731150 -16793428 - MIR SINE MIR -37 225 150 1875 149 0 7 chr3 210731150 210731445 -16793133 - AluJb SINE Alu -19 293 1 513 267 52 31 chr3 210731445 210731557 -16793021 - MIR SINE MIR -112 150 31 2233 119 7 0 chr3 210731854 210732205 -16792373 + AluSx SINE Alu 1 353 0 753 175 0 8 chr3 210732209 210732329 -16792249 + FLAM_C SINE Alu 2 120 -23 530 110 0 0 chr3 210732344 210732417 -16792161 - Alu SINE Alu -13 299 227 2101 135 0 0 chr3 210732447 210732750 -16791828 + AluSx SINE Alu 1 303 -9 237 83 0 0 chr3 210732889 210732925 -16791653 + (TC)n Simple_repeat Simple_repeat 1 36 0 858 128 0 35 chr3 210733050 210733191 -16791387 + FLAM_C SINE Alu 6 141 -2 204 125 0 0 chr3 210733577 210733609 -16790969 + (TCCC)n Simple_repeat Simple_repeat 3 34 0 1500 207 126 32 chr3 210734267 210734547 -16790031 + L1MC4 LINE L1 6472 6809 -1233 1841 109 66 4 chr3 210734547 210734821 -16789757 - AluSg SINE Alu -19 291 1 1500 207 126 32 chr3 210734821 210734975 -16789603 + L1MC4 LINE L1 6809 6947 -1095 662 149 193 0 chr3 210734978 210735092 -16789486 + AluJo SINE Alu 6 141 -171 2222 88 3 0 chr3 210735094 210735388 -16789190 + AluSp SINE Alu 1 295 -18 2489 50 0 0 chr3 210735396 210735693 -16788885 + AluY SINE Alu 1 297 -14 358 261 46 55 chr3 210735709 210735982 -16788596 + MLT1H LTR MaLR 212 547 -2 575 220 107 0 chr3 210736000 210736159 -16788419 - L1ME LINE L1 -456 5665 5490 2090 115 3 0 chr3 210736168 210736463 -16788115 - AluSx SINE Alu -16 296 1 241 228 22 43 chr3 210736658 210736750 -16787828 + GA-rich Low_complexity Low_complexity 3 92 0 1402 164 75 0 chr3 210736821 210737089 -16787489 + AluJo SINE Alu 1 288 -24 282 56 0 0 chr3 210737091 210737127 -16787451 + (GGAA)n Simple_repeat Simple_repeat 1 36 0 231 36 0 0 chr3 210737127 210737155 -16787423 + (GGGGA)n Simple_repeat Simple_repeat 5 32 0 448 309 41 31 chr3 210737263 210737457 -16787121 - MIR SINE MIR -54 208 13 612 191 243 6 chr3 210737555 210737728 -16786850 + MIR SINE MIR 35 248 -14 425 192 0 58 chr3 210737820 210737904 -16786674 + MER7A DNA MER2_type 1 77 -2961 1931 129 7 0 chr3 210737904 210738191 -16786387 + AluSx SINE Alu 1 289 -23 425 192 0 58 chr3 210738191 210738210 -16786368 + MER7A DNA MER2_type 77 96 -250 363 270 69 20 chr3 210738746 210738848 -16785730 + MIR SINE MIR 2 107 -102 1266 116 0 0 chr3 210738864 210739045 -16785533 - AluSg/x SINE Alu -9 303 123 2281 88 7 0 chr3 210739125 210739430 -16785148 + AluSp SINE Alu 1 307 -6 320 228 197 52 chr3 210739439 210739577 -16785001 + MIR SINE MIR 4 159 -62 2089 106 40 0 chr3 210739791 210740092 -16784486 - AluSq SINE Alu 0 313 1 339 323 87 65 chr3 210740105 210740334 -16784244 - L2 LINE L2 -36 3236 3003 1669 71 123 34 chr3 210741400 210741668 -16782910 - AluY SINE Alu -17 294 3 641 139 9 19 chr3 210741711 210741819 -16782759 + FRAM SINE Alu 56 162 -14 690 236 83 55 chr3 210742024 210742124 -16782454 - MIR SINE MIR 0 262 166 2289 96 0 0 chr3 210742124 210742425 -16782153 + AluSx SINE Alu 1 301 -11 690 236 83 55 chr3 210742425 210742578 -16782000 - MIR SINE MIR -96 166 2 551 226 45 32 chr3 210742885 210743040 -16781538 + LTR16A1 LTR ERVL 301 457 0 810 237 0 53 chr3 210743055 210743122 -16781456 + MER58A DNA MER1_type 28 97 -2323 2249 93 0 13 chr3 210743122 210743433 -16781145 - AluSx SINE Alu -5 307 1 810 237 0 53 chr3 210743433 210743572 -16781006 + MER58A DNA MER1_type 97 223 -1 242 321 86 0 chr3 210743601 210743682 -16780896 + MIR SINE MIR 157 244 -18 362 252 151 29 chr3 210743898 210744037 -16780541 + MER5A DNA MER1_type 28 183 -6 450 288 98 5 chr3 210744165 210744349 -16780229 - MIR SINE MIR -34 228 28 1694 165 3 16 chr3 210744363 210744541 -16780037 - AluJo SINE Alu -1 311 137 2129 119 0 0 chr3 210744541 210744835 -16779743 - AluSx SINE Alu -10 302 9 1694 165 3 16 chr3 210744835 210744959 -16779619 - AluJo SINE Alu -175 137 13 2390 80 0 3 chr3 210744981 210745292 -16779286 - AluSp SINE Alu -3 310 1 211 325 72 0 chr3 210745825 210745908 -16778670 - MIR SINE MIR -80 128 40 242 393 82 15 chr3 210746885 210747081 -16777497 - L2 LINE L2 -20 3252 3044 182 323 93 43 chr3 210747593 210747754 -16776824 + MIR3 SINE MIR 29 197 -11 412 318 82 82 chr3 210747846 210747941 -16776637 - L2 LINE L2 -5 3267 3173 2468 32 0 29 chr3 210747941 210748249 -16776329 + AluY SINE Alu 2 300 -11 412 318 82 82 chr3 210748249 210748496 -16776082 - L2 LINE L2 -99 3173 2927 2271 92 3 0 chr3 210748496 210748791 -16775787 + AluSx SINE Alu 1 296 -16 2111 98 6 50 chr3 210748799 210748890 -16775688 + AluSx SINE Alu 1 94 -218 2019 142 3 0 chr3 210748890 210749193 -16775385 + AluSx SINE Alu 1 304 -8 2111 98 6 50 chr3 210749193 210749418 -16775160 + AluSx SINE Alu 94 303 -9 412 318 82 82 chr3 210749418 210749552 -16775026 - L2 LINE L2 -352 2920 2782 307 314 99 12 chr3 210749554 210749726 -16774852 + MIR SINE MIR 6 192 -70 * 807 338 81 25 chr3 210749695 210750165 -16774413 - L2 LINE L2 -541 2773 2278 256 274 83 0 chr3 210751608 210751692 -16772886 + MIR3 SINE MIR 87 177 -31 809 156 0 22 chr3 210751696 210751831 -16772747 - FLAM_C SINE Alu 0 133 2 553 245 46 56 chr3 210752743 210752962 -16771616 - MIR SINE MIR -27 235 20 315 208 42 62 chr3 210752950 210753046 -16771532 - MIR SINE MIR -108 154 61 * 530 203 0 17 chr3 210755605 210755723 -16768855 + MER3 DNA MER1_type 32 147 -62 184 355 135 0 chr3 210756768 210756909 -16767669 + L2 LINE L2 2710 2869 -445 181 217 0 117 chr3 210757144 210757204 -16767374 + L2 LINE L2 3261 3313 0 417 244 116 58 chr3 210758105 210758277 -16766301 - MIR SINE MIR -27 235 54 213 211 19 0 chr3 210758623 210758675 -16765903 + (CACCC)n Simple_repeat Simple_repeat 5 57 0 183 281 70 0 chr3 210761571 210761628 -16762950 - MER5A DNA MER1_type -66 123 63 21 36 0 0 chr3 210762722 210762750 -16761828 + GC_rich Low_complexity Low_complexity 1 28 0 410 293 81 17 chr3 210763715 210763889 -16760689 + MIR SINE MIR 34 218 -44 228 237 87 97 chr3 210764467 210764674 -16759904 - L2 LINE L2 -118 3154 2950 27 49 0 0 chr3 210765386 210765427 -16759151 + GC_rich Low_complexity Low_complexity 1 41 0 30 0 0 0 chr3 210765931 210765961 -16758617 + GC_rich Low_complexity Low_complexity 1 30 0 200 125 0 25 chr3 210768655 210768695 -16755883 + (TA)n Simple_repeat Simple_repeat 1 39 0 2023 113 0 17 chr3 210768695 210768988 -16755590 - AluSx SINE Alu -24 288 1 795 167 0 77 chr3 210769146 210769302 -16755276 + AluJo SINE Alu 9 152 -160 307 273 131 20 chr3 210769598 210769697 -16754881 - L2 LINE L2 0 3313 3204 280 221 0 0 chr3 210769778 210769855 -16754723 - L1MC4 LINE L1 -142 7900 7824 1138 206 6 118 chr3 210769855 210770046 -16754532 - AluJb SINE Alu 0 302 164 225 65 0 0 chr3 210770046 210770077 -16754501 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 1138 206 6 118 chr3 210770077 210770224 -16754354 - AluJb SINE Alu -138 164 2 2116 123 3 19 chr3 210770229 210770546 -16754032 - AluSx SINE Alu 0 312 1 1049 210 46 4 chr3 210770552 210770814 -16753764 - L1MC4 LINE L1 -420 7622 7350 638 220 124 36 chr3 210770814 210770852 -16753726 - MLT2D LTR ERVL -7 407 374 270 0 0 0 chr3 210770852 210770882 -16753696 + (GA)n Simple_repeat Simple_repeat 1 30 0 638 220 124 36 chr3 210770882 210771093 -16753485 - MLT2D LTR ERVL -40 374 136 1975 123 42 0 chr3 210771137 210771421 -16753157 + AluSx SINE Alu 1 296 -16 2292 156 42 31 chr3 210771453 210771935 -16752643 + MLT2B3 LTR ERVL 47 533 -21 306 0 0 0 chr3 210771935 210771969 -16752609 + (TCCA)n Simple_repeat Simple_repeat 1 34 0 267 104 3 40 chr3 210771970 210772031 -16752547 + MLT2B3 LTR ERVL 394 554 0 345 197 14 0 chr3 210772031 210772102 -16752476 - MLT2D LTR ERVL -252 162 91 626 197 0 14 chr3 210772136 210772283 -16752295 - L1MC4 LINE L1 -685 7357 7213 227 81 0 0 chr3 210772307 210772344 -16752234 - L1ME1 LINE L1 -4 6162 6126 315 23 0 0 chr3 210772346 210772389 -16752189 - L1MB4 LINE L1 0 6180 6138 1971 135 14 0 chr3 210772426 210772723 -16751855 - AluSx SINE Alu -11 301 1 2172 100 3 7 chr3 210773064 210773364 -16751214 + AluSp SINE Alu 15 313 0 1694 167 3 36 chr3 210773368 210773674 -16750904 + AluJo SINE Alu 1 296 -16 2246 106 3 0 chr3 210773676 210774003 -16750575 + AluSx SINE Alu 1 312 0 796 282 40 16 chr3 210774043 210774291 -16750287 - MIR SINE MIR -7 255 2 4616 175 8 48 chr3 210774474 210774619 -16749959 + L1MC3 LINE L1 5426 5575 -2210 2218 93 7 0 chr3 210774619 210774919 -16749659 - AluSx SINE Alu -10 302 1 4616 175 8 48 chr3 210774919 210775844 -16748734 + L1MC3 LINE L1 5575 6453 -1332 2258 110 0 3 chr3 210775849 210776157 -16748421 - AluSx SINE Alu -5 307 1 230 290 124 41 chr3 210776409 210776554 -16748024 - MIR SINE MIR -70 192 36 1962 153 0 0 chr3 210776574 210776869 -16747709 - AluJb SINE Alu -17 295 1 183 304 0 18 chr3 210776883 210776939 -16747639 - MIR SINE MIR -3 259 205 2300 108 0 0 chr3 210777096 210777402 -16747176 + AluSx SINE Alu 1 306 -6 2477 60 0 0 chr3 210777405 210777705 -16746873 + AluY SINE Alu 1 300 -11 1030 121 10 61 chr3 210777718 210777885 -16746693 + AluSg/x SINE Alu 125 282 -30 462 18 0 0 chr3 210777885 210777940 -16746638 + (CA)n Simple_repeat Simple_repeat 2 56 0 1030 121 10 61 chr3 210777940 210777970 -16746608 + AluSg/x SINE Alu 282 312 0 507 303 179 0 chr3 210777976 210778171 -16746407 + MIR SINE MIR 31 260 -2 1374 184 123 4 chr3 210778240 210778501 -16746077 + AluJo SINE Alu 1 292 -10 2293 100 0 0 chr3 210778512 210778812 -16745766 + AluSx SINE Alu 1 300 -12 546 308 130 0 chr3 210778814 210779090 -16745488 + LTR16A LTR ERVL 139 450 0 249 354 0 12 chr3 210779699 210779781 -16744797 - L3 LINE CR1 -7 1570 1490 2209 107 3 0 chr3 210780565 210780865 -16743713 - AluSx SINE Alu -11 301 1 794 196 0 0 chr3 210780954 210781087 -16743491 - FLAM_A SINE Alu 0 133 1 2271 111 34 60 chr3 210783215 210783628 -16740950 + L1MA5 LINE L1 5893 6294 -6 2032 138 10 3 chr3 210783736 210784040 -16740538 + AluSx SINE Alu 1 306 -6 236 297 320 0 chr3 210784101 210784229 -16740349 - MIR SINE MIR -73 189 21 2872 170 22 14 chr3 210785078 210785672 -16738906 + L1MB7 LINE L1 5391 5989 -195 311 276 82 91 chr3 210788428 210788531 -16736047 - MIR SINE MIR -6 256 154 270 0 0 0 chr3 210788531 210788561 -16736017 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 311 276 82 91 chr3 210788561 210788700 -16735878 - MIR SINE MIR -108 154 16 319 144 78 0 chr3 210790548 210790638 -16733940 + L1MC5 LINE L1 7344 7440 -521 305 169 17 0 chr3 210790786 210790845 -16733733 + L1MC5 LINE L1 7819 7878 -83 2207 95 10 0 chr3 210790845 210791149 -16733429 - AluSp SINE Alu -6 307 1 484 184 10 39 chr3 210791317 210791420 -16733158 + AluJo SINE Alu 120 219 -93 366 257 55 15 chr3 210792778 210792891 -16731687 + MIR3 SINE MIR 84 202 -6 2011 133 7 7 chr3 210795818 210796127 -16728451 + AluJo SINE Alu 1 309 -3 23 0 0 0 chr3 210800645 210800668 -16723910 + GC_rich Low_complexity Low_complexity 1 23 0 29 47 0 0 chr3 210800926 210800969 -16723609 + GC_rich Low_complexity Low_complexity 1 43 0 333 0 0 0 chr3 210801162 210801199 -16723379 + (T)n Simple_repeat Simple_repeat 1 37 0 236 30 30 0 chr3 210802151 210802184 -16722394 + (TAA)n Simple_repeat Simple_repeat 2 35 0 1015 191 43 30 chr3 210802185 210802415 -16722163 - MIR SINE MIR -8 254 22 361 341 125 24 chr3 210802426 210802931 -16721647 - L2 LINE L2 -744 2570 2015 2053 135 26 13 chr3 210803029 210803333 -16721245 - AluSx SINE Alu -4 308 1 1773 133 47 22 chr3 210806094 210806372 -16718206 - AluSx SINE Alu -27 285 1 402 268 56 56 chr3 210808217 210808415 -16716163 + MIR SINE MIR 9 206 -56 320 350 58 0 chr3 210808460 210808597 -16715981 - MIR SINE MIR -3 259 115 406 263 123 32 chr3 210809746 210809963 -16714615 - MIR SINE MIR -6 256 16 254 281 111 65 chr3 210810049 210810266 -16714312 + L2 LINE L2 3019 3245 -27 1203 123 47 6 chr3 210812596 210812767 -16711811 + AluSx SINE Alu 1 178 -134 182 250 54 18 chr3 210813015 210813071 -16711507 + MIR SINE MIR 16 73 -135 1186 109 0 0 chr3 210813080 210813236 -16711342 + AluSx SINE Alu 157 312 0 2017 120 0 27 chr3 210813315 210813607 -16710971 + AluJo SINE Alu 16 299 -13 412 250 230 34 chr3 210813614 210813818 -16710760 - MIR SINE MIR -12 250 7 574 279 91 6 chr3 210813844 210814009 -16710569 - MIR SINE MIR -76 186 8 2406 95 0 0 chr3 210814337 210814642 -16709936 - AluSx SINE Alu -7 305 1 180 0 0 0 chr3 210815233 210815253 -16709325 + (CA)n Simple_repeat Simple_repeat 2 21 0 290 304 45 27 chr3 210815265 210815377 -16709201 + MIR SINE MIR 34 147 -115 2277 63 3 43 chr3 210815538 210815892 -16708686 + AluY SINE Alu 1 342 0 2403 89 10 3 chr3 210816127 210816431 -16708147 + AluSx SINE Alu 3 308 -4 184 152 0 0 chr3 210816694 210816727 -16707851 + MIR SINE MIR 129 161 -101 803 221 26 52 chr3 210816734 210816848 -16707730 + MIR SINE MIR 14 121 -141 1858 173 10 3 chr3 210816848 210817148 -16707430 - AluJo SINE Alu -9 303 2 803 221 26 52 chr3 210817148 210817264 -16707314 + MIR SINE MIR 121 238 -24 37 76 0 0 chr3 210819577 210819656 -16704922 + GC_rich Low_complexity Low_complexity 1 79 0 29 0 0 0 chr3 210819727 210819756 -16704822 + GC_rich Low_complexity Low_complexity 1 29 0 242 233 12 23 chr3 210819806 210819892 -16704686 + (CCCCG)n Simple_repeat Simple_repeat 5 89 0 2198 68 0 54 chr3 210820340 210820635 -16703943 + AluSp SINE Alu 3 281 -32 620 310 143 23 chr3 210820760 210820958 -16703620 - L2 LINE L2 -1 3312 3139 2432 100 0 0 chr3 210820958 210821269 -16703309 + AluSx SINE Alu 1 311 -1 620 310 143 23 chr3 210821269 210821531 -16703047 - L2 LINE L2 -174 3139 2787 708 175 141 19 chr3 210821869 210822075 -16702503 - AluY SINE Alu -7 304 74 1046 128 6 32 chr3 210822198 210822341 -16702237 - AluSg/x SINE Alu -36 274 134 2430 97 0 3 chr3 210822341 210822649 -16701929 - AluSx SINE Alu -5 307 1 1046 128 6 32 chr3 210822649 210822661 -16701917 - AluSg/x SINE Alu -176 134 123 819 142 7 35 chr3 210823512 210823653 -16700925 - AluJb SINE Alu -175 137 1 1936 146 14 7 chr3 210823653 210823948 -16700630 - AluJo SINE Alu -15 297 1 710 244 65 68 chr3 210824155 210824537 -16700041 - HAL1 LINE L1 -1427 1080 700 325 287 65 0 chr3 210824749 210824857 -16699721 - HAL1 LINE L1 -1132 1375 1261 * 630 298 68 61 chr3 210824856 210825211 -16699367 - HAL1 LINE L1 -2044 463 103 2320 102 0 10 chr3 210825211 210825381 -16699197 - AluSq SINE Alu -12 301 134 2375 104 0 3 chr3 210825381 210825690 -16698888 - AluSq SINE Alu -5 308 1 2320 102 0 10 chr3 210825690 210825823 -16698755 - AluSq SINE Alu -179 134 1 630 298 68 61 chr3 210825823 210825924 -16698654 - HAL1 LINE L1 -2404 103 4 2293 95 7 0 chr3 210826293 210826577 -16698001 - AluSq SINE Alu -22 291 6 2000 111 36 4 chr3 210826737 210827017 -16697561 - AluSx SINE Alu -23 289 1 449 207 262 0 chr3 210827148 210827293 -16697285 + MIR SINE MIR 60 242 -20 2062 146 3 0 chr3 210831594 210831888 -16692690 - AluJo SINE Alu -17 295 1 221 310 164 9 chr3 210832004 210832120 -16692458 + MIR3 SINE MIR 21 154 -54 2498 93 3 0 chr3 210832374 210832685 -16691893 + AluSp SINE Alu 1 312 -1 2148 117 0 3 chr3 210832686 210833002 -16691576 + AluSx SINE Alu 2 312 0 1856 153 24 3 chr3 210833004 210833298 -16691280 + AluJb SINE Alu 11 310 -2 2305 123 7 0 chr3 210833301 210833611 -16690967 + AluSx SINE Alu 1 312 0 288 225 56 0 chr3 210834776 210834847 -16689731 - L2 LINE L2 -9 3263 3189 305 232 27 3 chr3 210837213 210837294 -16687284 - MIR SINE MIR -90 118 28 309 26 0 0 chr3 210838020 210838058 -16686520 + (CA)n Simple_repeat Simple_repeat 2 39 0 258 250 12 25 chr3 210838476 210838556 -16686022 + (CATA)n Simple_repeat Simple_repeat 2 80 0 818 265 83 0 chr3 210838572 210838802 -16685776 + MIR SINE MIR 11 259 -3 1026 217 75 108 chr3 210838810 210839359 -16685219 - L1MC4a LINE L1 -1904 5904 5374 2242 136 0 3 chr3 210839378 210839687 -16684891 - AluSx SINE Alu -4 308 1 1387 159 32 0 chr3 210839695 210839915 -16684663 - AluJo SINE Alu -2 310 84 522 202 61 9 chr3 210839971 210840085 -16684493 + L2 LINE L2 3192 3311 -2 598 210 7 7 chr3 210840244 210840382 -16684196 - L1MB3 LINE L1 -32 6151 6014 1758 138 31 69 chr3 210840532 210840544 -16684034 - AluJb SINE Alu -4 308 297 189 0 0 0 chr3 210840544 210840565 -16684013 + (TA)n Simple_repeat Simple_repeat 1 21 0 1758 138 31 69 chr3 210840565 210840872 -16683706 - AluJb SINE Alu -15 297 1 495 137 42 0 chr3 210840881 210840976 -16683602 - L1MB3 LINE L1 -2 6181 6083 21 36 0 0 chr3 210840976 210841004 -16683574 + AT_rich Low_complexity Low_complexity 1 28 0 295 260 98 59 chr3 210841217 210841333 -16683245 + L1MC4a LINE L1 5722 5851 -1957 2277 112 0 3 chr3 210841333 210841638 -16682940 + AluSg SINE Alu 1 304 -6 295 260 98 59 chr3 210841638 210841725 -16682853 + L1MC4a LINE L1 5851 5933 -1875 21 0 0 0 chr3 210841771 210841792 -16682786 + AT_rich Low_complexity Low_complexity 1 21 0 2201 132 0 0 chr3 210842231 210842541 -16682037 + AluSx SINE Alu 1 310 -2 621 244 43 24 chr3 210842554 210842718 -16681860 + MER46C DNA MER2_type 81 247 -91 1631 146 68 34 chr3 210842730 210843053 -16681525 - MER1B DNA MER1_type -3 334 1 342 306 158 14 chr3 210843352 210843705 -16680873 + L1ME LINE L1 595 1025 -5045 269 243 74 79 chr3 210843793 210843838 -16680740 + L1ME LINE L1 1126 1170 -5091 1823 148 16 23 chr3 210843838 210844142 -16680436 + AluJo SINE Alu 3 304 -8 269 243 74 79 chr3 210844142 210844298 -16680280 + L1ME LINE L1 1170 1326 -4935 1182 273 34 11 chr3 210844412 210844851 -16679727 - L1MC4a LINE L1 -1141 5005 4557 24 0 0 0 chr3 210845393 210845417 -16679161 + AT_rich Low_complexity Low_complexity 1 24 0 395 277 256 0 chr3 210845731 210845868 -16678710 - MER5A DNA MER1_type -9 180 9 303 340 81 4 chr3 210845896 210846131 -16678447 - L1MC4a LINE L1 -3376 2770 2518 2118 114 17 3 chr3 210846133 210846430 -16678148 - AluSx SINE Alu -7 305 5 803 191 7 0 chr3 210846754 210846901 -16677677 + MER3 DNA MER1_type 1 148 -61 230 95 24 0 chr3 210846901 210846943 -16677635 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 197 222 44 0 chr3 210847072 210847117 -16677461 - L2 LINE L2 -89 3224 3178 24 0 0 0 chr3 210847176 210847200 -16677378 + AT_rich Low_complexity Low_complexity 1 24 0 1845 147 76 17 chr3 210847547 210847901 -16676677 - THE1C LTR MaLR 0 375 1 1315 108 5 5 chr3 210847901 210848104 -16676474 - THE1C-int LTR MaLR 0 1580 1378 394 133 0 0 chr3 210848111 210848171 -16676407 - THE1C-int LTR MaLR -461 1119 1060 2139 115 0 20 chr3 210849515 210849819 -16674759 + AluSg SINE Alu 1 298 -12 1122 140 10 5 chr3 210849824 210850031 -16674547 + L1MB7 LINE L1 5690 5897 -287 2339 96 3 3 chr3 210850039 210850342 -16674236 + AluSx SINE Alu 1 303 -9 458 250 12 76 chr3 210850342 210850514 -16674064 + MIR SINE MIR 40 200 -62 427 252 0 46 chr3 210850878 210851009 -16673569 - L1M4 LINE L1 -1124 5022 4898 2407 81 3 0 chr3 210851011 210851307 -16673271 + AluSp SINE Alu 5 301 -12 730 139 0 0 chr3 210851308 210851409 -16673169 + AluJ/FLAM SINE Alu 2 102 -210 390 123 0 0 chr3 210851409 210851474 -16673104 + L1MA2 LINE L1 6240 6304 0 1918 143 87 0 chr3 210851492 210851779 -16672799 + AluJb SINE Alu 1 312 0 2609 50 0 0 chr3 210851781 210852082 -16672496 + AluY SINE Alu 1 301 -10 197 315 0 0 chr3 210852114 210852168 -16672410 - L2 LINE L2 -309 2963 2910 2374 122 0 0 chr3 210852329 210852640 -16671938 + AluSx SINE Alu 1 311 -1 426 194 0 1 chr3 210852640 210852719 -16671859 + L1M3 LINE L1 5495 5574 -597 1122 129 6 39 chr3 210852732 210852889 -16671689 + FRAM SINE Alu 1 152 -160 2309 118 0 3 chr3 210852889 210853202 -16671376 + AluSx SINE Alu 1 312 0 1122 129 6 39 chr3 210853202 210853222 -16671356 + FRAM SINE Alu 152 171 -5 715 169 108 0 chr3 210853222 210853370 -16671208 + L1M3 LINE L1 5578 5741 -442 658 103 0 0 chr3 210853471 210853558 -16671020 - AluS SINE Alu -225 88 2 465 82 14 0 chr3 210853560 210853633 -16670945 - L1MA4 LINE L1 -124 6176 6103 751 168 0 0 chr3 210853634 210853747 -16670831 + FLAM_C SINE Alu 2 114 -29 527 128 75 0 chr3 210854388 210854482 -16670096 - AluSg/x SINE Alu 0 310 210 1747 97 0 0 chr3 210854582 210854799 -16669779 - AluSq SINE Alu -96 217 1 1327 226 68 6 chr3 210854823 210855160 -16669418 - MLT1C LTR MaLR 0 467 110 961 132 0 7 chr3 210855160 210855304 -16669274 - FLAM_C SINE Alu 0 143 1 342 137 0 0 chr3 210855310 210855387 -16669191 - Alu SINE Alu 0 310 234 915 86 0 0 chr3 210855392 210855509 -16669069 - AluSq/x SINE Alu -185 127 11 369 123 0 0 chr3 210855522 210855579 -16668999 - MLT1C LTR MaLR -346 121 65 1947 134 10 14 chr3 210855579 210855869 -16668709 - AluSc SINE Alu -20 289 1 635 245 40 20 chr3 210855887 210856087 -16668491 + L1MC4 LINE L1 7702 7905 -137 1118 90 0 0 chr3 210856119 210856263 -16668315 + AluYa5 SINE Alu 164 307 -4 602 238 0 0 chr3 210856305 210856406 -16668172 - FRAM SINE Alu -75 101 1 1654 162 34 0 chr3 210856434 210856700 -16667878 + AluSx SINE Alu 1 275 -37 180 281 70 0 chr3 210859576 210859633 -16664945 - MER5A DNA MER1_type -66 123 63 411 149 0 0 chr3 210861741 210861815 -16662763 + (TTCC)n Simple_repeat Simple_repeat 1 74 0 2302 110 3 0 chr3 210861815 210862115 -16662463 - AluSp SINE Alu -10 303 3 2002 197 16 35 chr3 210862117 210862519 -16662059 - L1M4 LINE L1 -1008 5138 4745 2269 113 0 0 chr3 210862519 210862812 -16661766 - AluSx SINE Alu -19 293 1 2002 197 16 35 chr3 210862812 210862901 -16661677 - L1M4 LINE L1 -1401 4745 4656 2343 115 0 3 chr3 210863356 210863669 -16660909 - AluSx SINE Alu 0 312 1 2234 105 0 10 chr3 210863858 210864162 -16660416 - AluSx SINE Alu -11 301 1 318 270 79 11 chr3 210864737 210864826 -16659752 - L1M4c LINE L1 -5027 1357 1263 220 228 18 0 chr3 210865636 210865693 -16658885 + CT-rich Low_complexity Low_complexity 1 58 0 1598 158 6 81 chr3 210866327 210866662 -16657916 + AluSx SINE Alu 1 310 -2 1591 186 42 57 chr3 210866880 210867305 -16657273 - L1M4 LINE L1 -1482 4664 4246 230 283 50 30 chr3 210967442 210967541 -16557037 - MIR SINE MIR -75 133 33 509 234 128 7 chr3 210968164 210968305 -16556273 + MIR SINE MIR 14 171 -91 2229 94 0 19 chr3 210968305 210968623 -16555955 - AluSx SINE Alu 0 312 1 291 259 7 44 chr3 210968634 210968769 -16555809 + CT-rich Low_complexity Low_complexity 3 132 0 190 303 0 53 chr3 210968872 210968948 -16555630 - L2 LINE L2 -57 3215 3144 1728 149 38 3 chr3 210969797 210970086 -16554492 + AluJb SINE Alu 2 300 -12 727 205 0 8 chr3 210970432 210970559 -16554019 + FLAM_A SINE Alu 1 126 -7 550 191 19 9 chr3 210970910 210971015 -16553563 - AluJo SINE Alu -90 222 117 819 182 0 0 chr3 210971023 210971166 -16553412 - FLAM_C SINE Alu 0 143 1 417 257 30 0 chr3 210971546 210971647 -16552931 + L2 LINE L2 3168 3271 -1 256 356 112 5 chr3 210971842 210972047 -16552531 + L2 LINE L2 1790 2016 -1298 259 320 82 16 chr3 210972258 210972380 -16552198 + L2 LINE L2 3141 3270 -2 243 257 267 9 chr3 210973218 210973323 -16551255 + MIR SINE MIR 121 252 -10 320 260 125 0 chr3 210973467 210973571 -16551007 - L2 LINE L2 -1 3271 3155 1605 123 0 16 chr3 210973581 210973825 -16550753 + AluSx SINE Alu 58 297 -15 718 293 63 41 chr3 210973964 210974281 -16550297 - L2 LINE L2 -1 3271 2948 249 317 8 8 chr3 210974909 210975032 -16549546 + (CA)n Simple_repeat Simple_repeat 1 123 0 411 184 0 0 chr3 210975495 210975582 -16548996 + (TG)n Simple_repeat Simple_repeat 1 87 0 2111 119 0 0 chr3 210976973 210977267 -16547311 - AluSq SINE Alu -19 294 1 245 319 32 0 chr3 210978257 210978351 -16546227 + MIR3 SINE MIR 109 205 -3 2226 92 0 10 chr3 210978363 210978667 -16545911 + AluSx SINE Alu 1 301 -11 231 217 17 0 chr3 210979695 210979755 -16544823 + (TCTCTG)n Simple_repeat Simple_repeat 5 65 0 296 326 23 35 chr3 210980328 210980638 -16543940 + L2 LINE L2 2545 2850 -464 311 185 25 37 chr3 210980848 210980929 -16543649 - MIR3 SINE MIR -20 188 109 2114 104 0 3 chr3 210981189 210981486 -16543092 - AluSx SINE Alu -16 296 1 560 238 84 0 chr3 210981653 210981796 -16542782 + MIR SINE MIR 20 174 -88 189 260 52 65 chr3 210982229 210982306 -16542272 + L3b LINE CR1 1265 1340 -243 180 327 0 0 chr3 210983194 210983246 -16541332 - L3 LINE CR1 -5 1572 1521 467 297 124 20 chr3 210983585 210983787 -16540791 + MIR SINE MIR 13 235 -27 253 275 125 0 chr3 210983787 210983867 -16540711 + L2 LINE L2 3189 3278 -35 359 301 102 17 chr3 210983884 210984143 -16540435 - L1MCa LINE L1 -2869 3557 2237 198 103 0 0 chr3 210984149 210984178 -16540400 + (TC)n Simple_repeat Simple_repeat 1 29 0 2005 140 0 9 chr3 210984180 210984495 -16540083 - AluJo SINE Alu 0 312 1 2156 97 7 0 chr3 210985408 210985698 -16538880 + AluSq SINE Alu 11 302 -11 26 30 0 0 chr3 210985820 210985853 -16538725 + AT_rich Low_complexity Low_complexity 1 33 0 2115 122 0 0 chr3 210986006 210986302 -16538276 - AluSx SINE Alu -16 296 1 206 301 21 43 chr3 210987893 210987986 -16536592 + L3 LINE CR1 651 741 -836 934 114 0 0 chr3 210988086 210988218 -16536360 - AluSq/x SINE Alu -181 132 1 265 269 161 0 chr3 210988347 210988440 -16536138 + L2 LINE L2 3205 3312 -1 25 0 0 0 chr3 210989155 210989180 -16535398 + AT_rich Low_complexity Low_complexity 1 25 0 679 178 0 38 chr3 210989489 210989674 -16534904 + CT-rich Low_complexity Low_complexity 3 180 0 2393 96 0 0 chr3 210989725 210990037 -16534541 - AluSx SINE Alu 0 312 1 915 170 85 6 chr3 210992059 210992224 -16532354 + MER5B DNA MER1_type 1 178 0 191 86 0 29 chr3 210992230 210992265 -16532313 + (GGAA)n Simple_repeat Simple_repeat 4 37 0 183 129 0 0 chr3 210992723 210992754 -16531824 + (TTCA)n Simple_repeat Simple_repeat 2 32 0 301 222 0 53 chr3 210993007 210993096 -16531482 - MIR SINE MIR -57 151 66 2196 118 0 0 chr3 210993434 210993740 -16530838 + AluSx SINE Alu 1 306 -6 2171 109 13 0 chr3 210993942 210994246 -16530332 - AluSq SINE Alu -5 308 1 314 213 0 53 chr3 210994453 210994542 -16530036 + MIR SINE MIR 66 151 -57 360 94 0 0 chr3 210995319 210995372 -16529206 + (CA)n Simple_repeat Simple_repeat 2 54 0 284 335 102 19 chr3 210995532 210995747 -16528831 - L2 LINE L2 -215 3057 2825 2079 136 0 0 chr3 210995891 210996200 -16528378 + AluSx SINE Alu 1 309 -3 406 264 51 30 chr3 210996621 210996840 -16527738 + MIR SINE MIR 39 261 -1 293 200 91 73 chr3 210997300 210997410 -16527168 + MIR SINE MIR 72 183 -79 2214 97 0 3 chr3 210997510 210997808 -16526770 + AluSx SINE Alu 1 297 -15 772 260 53 10 chr3 210998235 210998443 -16526135 + MIR SINE MIR 25 241 -21 2216 113 0 3 chr3 210998491 210998801 -16525777 - AluSc SINE Alu 0 309 1 553 190 36 44 chr3 210999055 210999192 -16525386 + MIR SINE MIR 10 145 -117 1508 59 0 5 chr3 210999311 210999498 -16525080 - AluSc SINE Alu -123 186 1 825 261 10 10 chr3 210999509 210999704 -16524874 + L3 LINE CR1 1380 1574 -3 1050 219 52 0 chr3 210999835 211000068 -16524510 + MIR SINE MIR 16 260 -2 210 150 0 0 chr3 211000209 211000249 -16524329 + (A)n Simple_repeat Simple_repeat 1 40 0 180 365 17 26 chr3 211000926 211001041 -16523537 - MIR SINE MIR -61 147 34 547 274 58 1 chr3 211001412 211001570 -16523008 + MIR SINE MIR 13 178 -62 411 265 86 31 chr3 211002925 211003087 -16521491 - MIR3 SINE MIR -21 187 17 334 330 38 29 chr3 211003492 211003701 -16520877 - L2 LINE L2 -211 3061 2851 404 182 31 4 chr3 211004488 211004594 -16519984 + MIR SINE MIR 80 146 -62 434 230 97 48 chr3 211005673 211005838 -16518740 + MIR3 SINE MIR 20 192 -16 2310 96 0 0 chr3 211006381 211006683 -16517895 + AluSg SINE Alu 1 302 -8 388 248 168 0 chr3 211006776 211006913 -16517665 + MIR SINE MIR 89 248 -14 2299 107 0 0 chr3 211007174 211007472 -16517106 + AluSx SINE Alu 1 298 -14 453 275 102 24 chr3 211008487 211008654 -16515924 + MIR SINE MIR 13 192 -70 497 229 41 0 chr3 211008858 211008980 -16515598 + MIR SINE MIR 81 207 -55 237 329 26 0 chr3 211009408 211009484 -16515094 - L2 LINE L2 -53 3219 3142 2290 115 0 3 chr3 211009517 211009830 -16514748 + AluSx SINE Alu 1 312 0 516 257 77 50 chr3 211009967 211010189 -16514389 + MIR SINE MIR 4 231 -31 591 287 124 51 chr3 211011656 211012086 -16512492 + L2 LINE L2 2463 2979 -293 1339 244 130 21 chr3 211012086 211012554 -16512024 + LTR33 LTR ERVL 3 521 0 591 287 124 51 chr3 211012554 211012676 -16511902 + L2 LINE L2 2979 3091 -181 190 269 45 15 chr3 211012900 211012967 -16511611 + L2 LINE L2 3158 3226 -46 2456 148 58 7 chr3 211013149 211013562 -16511016 - Tigger2a DNA MER2_type 0 434 1 1871 212 102 15 chr3 211013564 211014026 -16510552 - MLT1D LTR MaLR -2 503 2 301 299 82 0 chr3 211014532 211014629 -16509949 - MIR SINE MIR -2 260 156 2166 95 3 26 chr3 211014800 211015104 -16509474 - AluSx SINE Alu -15 297 1 215 315 22 22 chr3 211015496 211015588 -16508990 - MIR SINE MIR -119 143 52 777 186 8 0 chr3 211016685 211016809 -16507769 + FLAM_A SINE Alu 1 125 -8 1697 148 8 0 chr3 211018359 211018616 -16505962 - AluJo SINE Alu -12 300 42 241 298 115 0 chr3 211018696 211018800 -16505778 - MIR SINE MIR -71 191 76 2023 128 14 10 chr3 211019073 211019369 -16505209 + AluSx SINE Alu 1 297 -15 1137 157 29 34 chr3 211019774 211019978 -16504600 - MER3 DNA MER1_type -2 207 5 328 330 43 9 chr3 211019984 211020099 -16504479 + L2 LINE L2 3150 3268 -4 2089 113 3 0 chr3 211021577 211021892 -16502686 - AluSx SINE Alu 0 316 1 3222 232 96 23 chr3 211022185 211022652 -16501926 - L1ME3A LINE L1 0 6170 5738 2074 123 0 16 chr3 211022652 211022969 -16501609 - AluSx SINE Alu 0 312 1 3222 232 96 23 chr3 211022969 211023901 -16500677 - L1ME3A LINE L1 -432 5738 4634 252 0 0 0 chr3 211023908 211023936 -16500642 + (CA)n Simple_repeat Simple_repeat 1 28 0 480 328 51 29 chr3 211024313 211024624 -16499954 - L2 LINE L2 -1003 2311 1994 822 170 15 0 chr3 211024631 211024766 -16499812 + FRAM SINE Alu 1 132 -44 246 358 54 49 chr3 211024990 211025415 -16499163 + L2 LINE L2 2331 2757 -557 454 253 0 0 chr3 211025445 211025528 -16499050 - L2 LINE L2 -18 3254 3172 183 320 116 41 chr3 211025541 211025713 -16498865 + L2 LINE L2 2789 2973 -341 195 276 69 0 chr3 211026659 211026717 -16497861 + L3b LINE CR1 1119 1180 -403 227 354 145 51 chr3 211027076 211027489 -16497089 + L2 LINE L2 2812 3263 -9 1157 44 0 0 chr3 211027831 211027966 -16496612 + L1PA4 LINE L1 6021 6155 0 323 301 72 34 chr3 211028616 211028802 -16495776 - MIR SINE MIR -50 212 21 2491 82 0 0 chr3 211029157 211029462 -16495116 - AluY SINE Alu -6 305 1 333 224 280 7 chr3 211030457 211030600 -16493978 + MER5A DNA MER1_type 7 188 -1 684 203 56 21 chr3 211030725 211030868 -16493710 + MER6 DNA MER2_type -4 864 -1 236 303 61 58 chr3 211031229 211031411 -16493167 + MIR SINE MIR 24 204 -58 339 265 44 66 chr3 211031525 211031661 -16492917 - MIR SINE MIR -73 189 57 203 258 15 30 chr3 211032930 211032996 -16491582 + L3 LINE CR1 377 441 -1136 2244 96 0 34 chr3 211033872 211034195 -16490383 + AluSx SINE Alu 1 312 0 1218 251 137 17 chr3 211034613 211035139 -16489439 - L1ME4a LINE L1 -13 6108 5520 188 178 111 22 chr3 211035175 211035220 -16489358 - L3b LINE CR1 -9 1574 1526 * 409 245 0 11 chr3 211035186 211035280 -16489298 - MIR3 SINE MIR -29 179 87 1035 17 0 0 chr3 211035549 211035665 -16488913 + AluY SINE Alu 192 307 -4 2322 107 10 0 chr3 211037592 211037901 -16486677 + AluSx SINE Alu 1 312 0 2312 84 17 3 chr3 211038930 211039229 -16485349 + AluSp SINE Alu 1 303 -10 340 234 20 153 chr3 211039376 211039624 -16484954 - MIR SINE MIR -19 243 29 222 362 67 9 chr3 211040886 211040991 -16483587 - L2 LINE L2 -30 3242 3132 1931 130 7 7 chr3 211041359 211041666 -16482912 - AluSx SINE Alu 0 307 1 2244 121 0 0 chr3 211042015 211042322 -16482256 - AluSx SINE Alu -5 307 1 201 296 42 14 chr3 211042330 211042401 -16482177 + L2 LINE L2 3241 3313 0 226 174 0 22 chr3 211044535 211044581 -16479997 + L2 LINE L2 3264 3308 -5 365 233 39 19 chr3 211045000 211045103 -16479475 - Charlie7 DNA MER1_type -2506 106 2 361 255 75 68 chr3 211046136 211046297 -16478281 - MER5A DNA MER1_type -21 168 7 906 309 92 21 chr3 211046593 211047271 -16477307 - L2 LINE L2 -6 3307 2581 737 210 6 6 chr3 211048874 211049031 -16475547 - L1ME2 LINE L1 -10 6154 5998 239 200 0 57 chr3 211049508 211049578 -16475000 + (TATATG)n Simple_repeat Simple_repeat 2 67 0 221 374 9 26 chr3 211049584 211049699 -16474879 - L2 LINE L2 -11 3302 3190 580 303 46 25 chr3 211049948 211050186 -16474392 + L2 LINE L2 2397 2639 -675 228 211 0 19 chr3 211050183 211050235 -16474343 + L2 LINE L2 2920 2970 -343 * 609 156 28 28 chr3 211050365 211050474 -16474104 - FLAM_C SINE Alu -33 110 2 392 283 72 29 chr3 211050494 211050632 -16473946 + L2 LINE L2 3168 3311 -2 540 145 0 0 chr3 211050687 211050763 -16473815 + MER58A DNA MER1_type 2 77 -30 409 194 0 0 chr3 211051194 211051266 -16473312 - MER58C DNA MER1_type 0 215 144 207 223 234 21 chr3 211051267 211051361 -16473217 - MIR SINE MIR -134 128 15 9064 108 31 2 chr3 211051755 211053020 -16471558 - HSMAR2 DNA Mariner 0 1302 2 1188 119 18 0 chr3 211053645 211053813 -16470765 + FAM SINE Alu 1 171 -4 279 203 0 0 chr3 211053814 211053873 -16470705 + (TA)n Simple_repeat Simple_repeat 1 59 0 230 174 0 0 chr3 211053873 211053919 -16470659 - LTR66 LTR ERVL -171 439 394 312 27 0 0 chr3 211053919 211053956 -16470622 + (CA)n Simple_repeat Simple_repeat 2 38 0 1767 82 4 4 chr3 211054280 211054512 -16470066 - AluY SINE Alu -16 295 64 312 219 0 16 chr3 211057134 211057198 -16467380 + L1MEc LINE L1 37 99 -6297 223 172 17 17 chr3 211057201 211057259 -16467319 + GA-rich Low_complexity Low_complexity 4 61 0 3288 240 138 11 chr3 211057391 211058523 -16466055 + L1MEc LINE L1 257 1531 -4865 3476 194 34 30 chr3 211058540 211058788 -16465790 + L1MB8 LINE L1 5357 5603 -575 2301 98 0 0 chr3 211058788 211059085 -16465493 + AluSx SINE Alu 1 297 -15 3476 194 34 30 chr3 211059085 211059641 -16464937 + L1MB8 LINE L1 5603 6164 -14 641 249 155 14 chr3 211059644 211059921 -16464657 + L1MEc LINE L1 1844 2159 -4237 2019 149 0 0 chr3 211060646 211060941 -16463637 + AluSx SINE Alu 1 295 -17 1043 266 115 46 chr3 211061305 211061782 -16462796 - MLT1J LTR MaLR -1 510 1 21 0 0 0 chr3 211061904 211061925 -16462653 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr3 211062729 211062753 -16461825 + (CA)n Simple_repeat Simple_repeat 2 25 0 1470 138 9 4 chr3 211062753 211062978 -16461600 + AluJo SINE Alu 65 290 -22 25 0 0 0 chr3 211064285 211064310 -16460268 + AT_rich Low_complexity Low_complexity 1 25 0 849 207 21 21 chr3 211064527 211064715 -16459863 - MER58C DNA MER1_type 0 215 28 859 243 52 28 chr3 211066143 211066394 -16458184 - MIR SINE MIR -5 257 1 911 277 25 21 chr3 211066484 211066726 -16457852 - MIR SINE MIR -16 246 4 895 304 297 11 chr3 211067228 211068131 -16456447 + L3 LINE CR1 332 1492 -85 189 0 0 0 chr3 211068139 211068160 -16456418 + (T)n Simple_repeat Simple_repeat 1 21 0 1941 144 3 13 chr3 211068787 211069086 -16455492 + AluJb SINE Alu 1 296 -16 718 350 181 21 chr3 211069130 211069369 -16455209 + L2 LINE L2 1906 2105 -1167 327 324 66 28 chr3 211069369 211069551 -16455027 + MER5A DNA MER1_type 1 189 0 718 350 181 21 chr3 211069551 211070283 -16454295 + L2 LINE L2 2105 3031 -241 239 215 215 13 chr3 211070392 211070471 -16454107 + L2 LINE L2 3215 3309 -4 512 273 87 22 chr3 211070623 211070806 -16453772 - MIR SINE MIR -67 195 1 21 0 0 0 chr3 211071173 211071194 -16453384 + AT_rich Low_complexity Low_complexity 1 21 0 2199 110 7 0 chr3 211071199 211071490 -16453088 - AluSq SINE Alu -20 293 1 270 271 0 24 chr3 211071959 211072044 -16452534 + (TATATG)n Simple_repeat Simple_repeat 5 87 0 5392 248 57 13 chr3 211073165 211076050 -16448528 - L1MD1 LINE L1 0 6225 3206 573 341 151 27 chr3 211076081 211076858 -16447720 + L2 LINE L2 1895 2767 -547 1789 295 53 33 chr3 211076876 211077162 -16447416 - L1MD1 LINE L1 -5262 857 578 2994 52 0 0 chr3 211077162 211077511 -16447067 - L1PA6 LINE L1 -8 6146 5798 1789 295 53 33 chr3 211077511 211078003 -16446575 - L1MD1 LINE L1 -5541 578 64 386 286 64 18 chr3 211078935 211079106 -16445472 - L1ME LINE L1 -415 5706 5528 21 0 0 0 chr3 211079335 211079356 -16445222 + AT_rich Low_complexity Low_complexity 1 21 0 228 261 0 0 chr3 211079536 211079582 -16444996 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 231 152 0 0 chr3 211079582 211079628 -16444950 - L1MC4 LINE L1 -1339 6703 6658 2280 96 0 3 chr3 211079667 211079960 -16444618 - AluSg SINE Alu -18 292 1 1859 174 0 13 chr3 211080142 211080453 -16444125 + AluJo SINE Alu 1 307 -5 698 238 31 66 chr3 211080519 211080746 -16443832 - MIR SINE MIR -36 226 8 2469 67 0 3 chr3 211081070 211081369 -16443209 - AluY SINE Alu -13 298 1 237 267 89 0 chr3 211081664 211081754 -16442824 - MIR SINE MIR -54 208 111 520 284 68 0 chr3 211083690 211083866 -16440712 - MIR3 SINE MIR -17 191 4 271 349 87 7 chr3 211084307 211084456 -16440122 - L2 LINE L2 -1 3271 3111 410 257 29 0 chr3 211084680 211084785 -16439793 - MIR SINE MIR -70 192 85 1699 128 3 57 chr3 211085920 211086217 -16438361 + AluJb SINE Alu 1 281 -31 284 208 66 0 chr3 211086277 211086365 -16438213 - MIR SINE MIR -93 115 22 241 226 19 0 chr3 211087893 211087946 -16436632 + MIR SINE MIR 71 124 -84 2312 110 0 0 chr3 211088459 211088759 -16435819 - AluSx SINE Alu -12 300 1 2235 116 0 0 chr3 211089062 211089365 -16435213 + AluSx SINE Alu 1 303 -9 2328 110 0 0 chr3 211089989 211090299 -16434279 + AluSx SINE Alu 1 310 -2 2175 97 0 27 chr3 211090314 211090612 -16433966 + AluSg SINE Alu 1 290 -20 2220 97 3 3 chr3 211090613 211090912 -16433666 + AluSc SINE Alu 1 299 -10 181 258 81 16 chr3 211093521 211093583 -16430995 - L2 LINE L2 -95 3177 3112 468 257 123 5 chr3 211093688 211093875 -16430703 - MIR SINE MIR 0 262 54 2118 117 3 10 chr3 211093885 211094185 -16430393 - AluSx SINE Alu -14 298 1 475 281 206 42 chr3 211094255 211094483 -16430095 - L2 LINE L2 -339 2975 2786 2034 135 0 46 chr3 211094483 211094809 -16429769 + AluSx SINE Alu 1 311 -1 475 281 206 42 chr3 211094809 211095182 -16429396 - L2 LINE L2 -528 2786 2275 500 234 23 76 chr3 211095544 211095715 -16428863 - L2 LINE L2 -2 3311 3150 526 289 176 6 chr3 211095725 211095884 -16428694 - MER91A DNA MER1_type -8 188 3 2177 241 44 3 chr3 211095906 211096651 -16427927 - L2 LINE L2 -186 3127 2350 297 307 87 8 chr3 211096714 211096841 -16427737 - MIR SINE MIR -118 144 8 186 283 83 0 chr3 211096885 211096945 -16427633 + L2 LINE L2 3149 3213 -59 2253 76 7 7 chr3 211097079 211097368 -16427210 - AluSq SINE Alu -24 289 1 242 180 60 0 chr3 211097721 211097771 -16426807 + L2 LINE L2 3205 3257 -15 198 0 0 0 chr3 211097777 211097799 -16426779 + (TG)n Simple_repeat Simple_repeat 1 22 0 384 286 136 20 chr3 211097855 211098002 -16426576 - MIR SINE MIR -69 193 30 220 289 178 66 chr3 211098126 211098323 -16426255 - L2 LINE L2 -172 3100 2882 1063 244 28 68 chr3 211098337 211098689 -16425889 + MER102b DNA MER1_type 4 341 0 5651 108 4 13 chr3 211098981 211099816 -16424762 - L1PB1 LINE L1 -3 6148 5322 2022 124 14 3 chr3 211099816 211100107 -16424471 - AluSq SINE Alu -19 294 1 2371 169 0 27 chr3 211100107 211100431 -16424147 - L1PB1 LINE L1 -1891 4255 3945 2293 110 0 0 chr3 211100431 211100730 -16423848 - AluSx SINE Alu -13 299 1 2371 169 0 27 chr3 211100730 211100843 -16423735 - L1PB1 LINE L1 -2201 3945 3830 1785 156 35 3 chr3 211100981 211101263 -16423315 + AluJb SINE Alu 1 291 -21 771 149 6 12 chr3 211101263 211101424 -16423154 + GA-rich Low_complexity Low_complexity 1 160 0 317 191 15 15 chr3 211101434 211101502 -16423076 + MIR SINE MIR 81 148 -114 230 286 0 0 chr3 211101943 211102006 -16422572 + CT-rich Low_complexity Low_complexity 4 66 0 2276 115 3 6 chr3 211102436 211102783 -16421795 - AluSp SINE Alu 0 346 1 235 165 20 16 chr3 211102855 211102925 -16421653 - MIR SINE MIR -75 133 88 197 302 43 29 chr3 211103304 211103443 -16421135 + L2 LINE L2 2289 2429 -885 455 233 83 50 chr3 211103655 211103895 -16420683 - HAL1 LINE L1 -3 2504 2257 1452 116 27 5 chr3 211103926 211104031 -16420547 - MER30 DNA MER1_type -1 229 128 216 0 0 0 chr3 211104031 211104055 -16420523 + (TTTA)n Simple_repeat Simple_repeat 2 25 0 2203 72 0 38 chr3 211104057 211104347 -16420231 - AluY SINE Alu -32 279 1 1452 116 27 5 chr3 211104347 211104462 -16420116 - MER30 DNA MER1_type -102 128 1 * 1530 218 95 37 chr3 211104462 211104888 -16419690 + LTR16C LTR ERVL 41 491 0 1844 224 134 27 chr3 211104888 211105516 -16419062 - HAL1 LINE L1 -231 2276 1582 538 237 17 40 chr3 211105800 211105870 -16418708 - L1MB7 LINE L1 -11 6173 6103 717 217 8 0 chr3 211105870 211105999 -16418579 + FLAM_A SINE Alu 2 131 -2 538 237 17 40 chr3 211105999 211106101 -16418477 - L1MB7 LINE L1 -81 6103 6005 1500 244 128 101 chr3 211106106 211107025 -16417553 - HAL1 LINE L1 -1013 1494 519 1641 108 12 21 chr3 211107025 211107266 -16417312 + AluSg/x SINE Alu 69 307 -3 1500 244 128 101 chr3 211107266 211107799 -16416779 - HAL1 LINE L1 -1988 519 2 289 335 82 13 chr3 211108242 211108415 -16416163 - MIR SINE MIR -74 188 5 793 216 95 26 chr3 211108660 211108891 -16415687 + MIR SINE MIR 15 261 -1 278 260 31 52 chr3 211108893 211108989 -16415589 - MIR SINE MIR -57 205 112 2270 91 23 7 chr3 211109030 211109337 -16415241 - AluSx SINE Alu 0 312 1 216 244 104 61 chr3 211109520 211109635 -16414943 + MIR SINE MIR 29 148 -60 210 294 37 66 chr3 211109831 211109967 -16414611 - MIR SINE MIR -78 184 53 2505 72 0 0 chr3 211109977 211110270 -16414308 - AluSg SINE Alu -17 293 1 193 279 115 39 chr3 211110379 211110483 -16414095 - MIR3 SINE MIR -82 126 15 897 231 125 63 chr3 211110551 211110712 -16413866 + MLT1J LTR MaLR 47 196 -315 1773 226 60 77 chr3 211110712 211110865 -16413713 + MLT1E LTR MaLR 3 157 -436 1775 195 0 0 chr3 211110865 211111162 -16413416 - AluJo SINE Alu -15 297 1 1773 226 60 77 chr3 211111162 211111609 -16412969 + MLT1E LTR MaLR 157 593 0 897 231 125 63 chr3 211111609 211111750 -16412828 + MLT1J LTR MaLR 196 368 -143 282 289 0 33 chr3 211112509 211112599 -16411979 + L2 LINE L2 3170 3256 -16 908 247 78 22 chr3 211112714 211112985 -16411593 - L2 LINE L2 -1 3312 3027 419 304 141 4 chr3 211113027 211113254 -16411324 + MLT1J2 LTR MaLR 67 324 -126 417 223 0 11 chr3 211113290 211113384 -16411194 - L2 LINE L2 -274 3039 2947 2273 89 14 0 chr3 211113587 211113879 -16410699 - AluSx SINE Alu -16 296 1 1611 154 75 26 chr3 211113885 211114191 -16410387 - L1MC1 LINE L1 -2 6331 6011 1087 259 86 58 chr3 211115407 211116114 -16408464 + L1ME4a LINE L1 5386 6112 -9 335 242 30 40 chr3 211116227 211116326 -16408252 - L3 LINE CR1 -192 1385 1288 343 67 0 0 chr3 211116361 211116406 -16408172 - MADE1 DNA Mariner -35 45 1 210 308 60 34 chr3 211116479 211116596 -16407982 - L3 LINE CR1 -383 1194 1075 202 311 95 7 chr3 211116606 211116754 -16407824 + L2 LINE L2 2696 2856 -458 451 239 130 0 chr3 211116763 211116901 -16407677 - MER112 DNA MER1_type 0 260 105 351 0 0 0 chr3 211116905 211116944 -16407634 + (TCTA)n Simple_repeat Simple_repeat 4 42 0 1547 132 43 19 chr3 211117010 211117267 -16407311 - AluSg SINE Alu -17 293 31 753 159 129 0 chr3 211117370 211117533 -16407045 - AluSp SINE Alu -128 185 2 294 180 0 0 chr3 211117535 211117585 -16406993 - MER112 DNA MER1_type -210 50 1 26 30 0 0 chr3 211118317 211118350 -16406228 + AT_rich Low_complexity Low_complexity 1 33 0 408 261 108 6 chr3 211120640 211120797 -16403781 - MLT1K LTR MaLR -4 584 412 6529 117 96 17 chr3 211120868 211122009 -16402569 - Tigger3b DNA MER2_type 0 1231 1 180 77 0 0 chr3 211122324 211122350 -16402228 + (A)n Simple_repeat Simple_repeat 1 26 0 42730 70 16 18 chr3 211123815 211124647 -16399931 - HUERS-P1 LTR ERV1 -558 5705 4873 2312 109 3 0 chr3 211124647 211124949 -16399629 - AluSp SINE Alu -10 303 1 42730 70 16 18 chr3 211124949 211125721 -16398857 - HUERS-P1 LTR ERV1 -1390 4873 4101 2577 46 3 0 chr3 211125721 211126023 -16398555 + AluY SINE Alu 1 303 -8 42730 70 16 18 chr3 211126023 211126601 -16397977 - HUERS-P1 LTR ERV1 -2162 4101 3523 2000 122 37 7 chr3 211126601 211126897 -16397681 + AluSx SINE Alu 1 305 -7 42730 70 16 18 chr3 211126897 211128553 -16396025 - HUERS-P1 LTR ERV1 -2740 3523 1866 207 0 0 0 chr3 211128553 211128576 -16396002 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 42730 70 16 18 chr3 211128576 211130449 -16394129 - HUERS-P1 LTR ERV1 -4397 1866 1 1157 70 14 0 chr3 211130449 211130591 -16393987 - LTR8 LTR ERV1 0 691 548 2549 82 0 0 chr3 211132059 211132365 -16392213 - AluSg SINE Alu -4 306 1 2057 117 4 0 chr3 211133244 211133525 -16391053 - AluSx SINE Alu -8 304 23 226 267 13 27 chr3 211133641 211133716 -16390862 + L2 LINE L2 3184 3257 -15 246 288 0 0 chr3 211134253 211134312 -16390266 + (CCCTAG)n Simple_repeat Simple_repeat 6 64 0 189 0 0 0 chr3 211134682 211134703 -16389875 + (TCC)n Simple_repeat Simple_repeat 1 21 0 208 329 55 30 chr3 211135802 211135966 -16388612 - L2 LINE L2 -541 2773 2606 323 227 13 27 chr3 211135981 211136056 -16388522 + L2 LINE L2 3232 3305 -8 184 326 61 23 chr3 211136224 211136262 -16388316 + L2 LINE L2 2915 2950 -322 1070 83 0 6 chr3 211136262 211136418 -16388160 + (TTCC)n Simple_repeat Simple_repeat 1 155 0 184 326 61 23 chr3 211136418 211136511 -16388067 + L2 LINE L2 2950 3051 -221 367 212 102 25 chr3 211136570 211136688 -16387890 - MIR SINE MIR -7 255 129 684 238 77 0 chr3 211136710 211136891 -16387687 + MIR SINE MIR 66 260 -2 572 187 166 0 chr3 211137082 211137221 -16387357 - MIR SINE MIR -89 173 12 23 68 0 0 chr3 211137233 211137277 -16387301 + AT_rich Low_complexity Low_complexity 1 44 0 449 283 52 0 chr3 211137612 211137789 -16386789 - MIR SINE MIR -41 221 37 1319 170 91 57 chr3 211138032 211138333 -16386245 + L1ME2 LINE L1 5799 6088 -76 243 0 0 0 chr3 211138333 211138360 -16386218 + (TTTTC)n Simple_repeat Simple_repeat 3 29 0 1918 128 0 57 chr3 211138362 211138659 -16385919 - AluSx SINE Alu -32 280 1 1319 170 91 57 chr3 211138659 211138707 -16385871 + L1ME2 LINE L1 6088 6163 -1 2459 58 10 19 chr3 211138897 211139207 -16385371 - AluY SINE Alu -3 308 2 290 254 27 63 chr3 211139507 211139667 -16384911 + MIR SINE MIR 62 215 -47 361 273 153 0 chr3 211141701 211141851 -16382727 - MIR SINE MIR -70 192 20 2194 134 0 0 chr3 211142696 211143001 -16381577 - AluSp SINE Alu -7 306 2 401 234 125 79 chr3 211143530 211143962 -16380616 - L1ME4a LINE L1 0 6121 5670 392 262 94 73 chr3 211143977 211144305 -16380273 - L1ME4a LINE L1 -4 6117 5783 489 231 54 47 chr3 211144477 211144754 -16379824 - L1ME4a LINE L1 0 6121 5843 22 0 0 0 chr3 211144779 211144801 -16379777 + AT_rich Low_complexity Low_complexity 1 22 0 317 276 69 0 chr3 211144922 211145009 -16379569 - L1MC4a LINE L1 -1844 5964 5872 851 147 19 13 chr3 211145013 211145169 -16379409 - L1MC1 LINE L1 0 6333 6177 230 88 29 0 chr3 211145403 211145437 -16379141 + L1MC1 LINE L1 6178 6212 -121 1329 110 20 0 chr3 211145448 211145648 -16378930 - L1MC1 LINE L1 -135 6198 5995 2333 84 0 0 chr3 211145679 211145987 -16378591 + AluY SINE Alu 1 308 0 1466 286 117 22 chr3 211146021 211146996 -16377582 - L1MC1 LINE L1 -743 5403 4787 1000 276 64 26 chr3 211146998 211147652 -16376926 - L1ME4a LINE L1 -295 5826 4961 198 0 0 0 chr3 211147664 211147686 -16376892 + (TTTA)n Simple_repeat Simple_repeat 2 23 0 369 0 0 0 chr3 211147733 211147774 -16376804 + (TG)n Simple_repeat Simple_repeat 2 42 0 494 254 78 7 chr3 211147948 211148090 -16376488 + MIR SINE MIR 53 204 -58 947 198 0 6 chr3 211148478 211148655 -16375923 + MER5B DNA MER1_type 3 178 0 2059 139 57 25 chr3 211149107 211149460 -16375118 + THE1B LTR MaLR 1 364 0 1748 230 88 31 chr3 211150964 211151234 -16373344 + MER20B DNA MER1_type 10 321 -462 1892 99 51 7 chr3 211151234 211151530 -16373048 - AluSx SINE Alu 0 308 1 1748 230 88 31 chr3 211151530 211151737 -16372841 + MER20B DNA MER1_type 321 515 -268 1231 214 20 17 chr3 211151828 211152123 -16372455 + MER20B DNA MER1_type 488 783 0 441 289 39 55 chr3 211152144 211152347 -16372231 - MIR SINE MIR -61 201 3 2367 90 7 0 chr3 211152423 211152723 -16371855 - AluSx SINE Alu -10 302 1 2524 77 0 0 chr3 211153183 211153493 -16371085 - AluY SINE Alu 0 311 2 3775 59 51 2 chr3 211153595 211154120 -16370458 + HUERS-P1 LTR ERV1 5710 6260 -3 4046 65 23 68 chr3 211154122 211154667 -16369911 + LTR8 LTR ERV1 1 516 -175 2575 75 0 0 chr3 211154667 211154975 -16369603 + AluSc SINE Alu 1 308 -1 4046 65 23 68 chr3 211154975 211155044 -16369534 + LTR8 LTR ERV1 516 587 -104 379 247 36 143 chr3 211155643 211155894 -16368684 - MIR SINE MIR 0 262 39 1827 156 23 10 chr3 211156288 211156596 -16367982 + AluJo SINE Alu 1 312 0 343 315 111 17 chr3 211156643 211156824 -16367754 + MIR SINE MIR 58 255 -7 * 432 241 148 137 chr3 211156812 211157273 -16367305 - L2 LINE L2 -13 3300 2835 4413 67 3 7 chr3 211207873 211208458 -16316120 - L1PA8A LINE L1 -1 6130 5548 1721 175 14 7 chr3 211208488 211208785 -16315793 + AluJb SINE Alu 1 299 -13 568 209 26 0 chr3 211209574 211209689 -16314889 - MER21B LTR ERV1 -75 788 671 2712 204 40 58 chr3 211209690 211210377 -16314201 - MER72 LTR ERV1 0 722 48 4494 148 15 28 chr3 211210377 211211170 -16313408 - LTR39 LTR ERV1 0 783 1 2712 204 40 58 chr3 211211170 211211217 -16313361 - MER72 LTR ERV1 -674 48 2 2941 205 21 24 chr3 211211218 211211848 -16312730 - MER21B LTR ERV1 -190 673 46 3944 182 40 49 chr3 211212018 211212981 -16311597 + LTR13 LTR ERVK 1 954 0 202 340 107 6 chr3 211214123 211214282 -16310296 - L2 LINE L2 -27 3286 3112 555 235 43 34 chr3 211214881 211215115 -16309463 - MER34B LTR ERV1 -3 562 327 410 288 51 49 chr3 211215456 211215845 -16308733 - L1M4 LINE L1 -1449 4697 4308 545 274 92 28 chr3 211215916 211216233 -16308345 - L1M4 LINE L1 -1944 4202 3866 23 0 0 0 chr3 211216402 211216425 -16308153 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr3 211216566 211216596 -16307982 + AT_rich Low_complexity Low_complexity 1 30 0 1755 185 48 0 chr3 211217131 211217487 -16307091 - L1M3 LINE L1 -389 5794 5422 395 283 96 62 chr3 211217893 211218246 -16306332 - L2 LINE L2 -475 2839 2475 1943 183 69 15 chr3 211218319 211218723 -16305855 - MSTB LTR MaLR 0 426 1 1691 176 21 0 chr3 211219305 211219595 -16304983 - AluJb SINE Alu -16 296 1 23 0 0 0 chr3 211219859 211219882 -16304696 + AT_rich Low_complexity Low_complexity 1 23 0 2280 93 3 17 chr3 211219887 211220188 -16304390 + AluSx SINE Alu 1 297 -15 4326 157 31 17 chr3 211220191 211221057 -16303521 - L1MB3 LINE L1 -7 6176 5299 2234 101 0 10 chr3 211221448 211221746 -16302832 - AluSg SINE Alu -15 295 1 2267 107 7 0 chr3 211221757 211222057 -16302521 - AluSx SINE Alu -10 302 1 2084 109 3 13 chr3 211222229 211222540 -16302038 - AluSx SINE Alu -4 308 1 1838 168 3 0 chr3 211223000 211223291 -16301287 - AluSx SINE Alu -16 296 5 3019 202 46 27 chr3 211223292 211225313 -16299265 - L1MC2 LINE L1 -371 5973 3992 746 137 23 8 chr3 211225313 211225444 -16299134 - FLAM_C SINE Alu 0 133 1 3019 202 46 27 chr3 211225444 211225668 -16298910 - L1MC2 LINE L1 -2352 3992 3774 2342 69 7 10 chr3 211225668 211225971 -16298607 + AluY SINE Alu 1 302 -9 3019 202 46 27 chr3 211225971 211226050 -16298528 - L1MC2 LINE L1 -2570 3774 3544 500 331 0 0 chr3 211226221 211226342 -16298236 + L2 LINE L2 3142 3262 -10 251 342 35 26 chr3 211226452 211226566 -16298012 - MIR SINE MIR -62 146 32 349 286 32 11 chr3 211228173 211228289 -16296289 + MIR SINE MIR 2 122 -86 6569 164 72 84 chr3 211228290 211228839 -16295739 + LTR49-int LTR ERV1 4041 4595 -1736 3791 33 0 4 chr3 211228839 211229293 -16295285 + L1PA5 LINE L1 5703 6154 0 6569 164 72 84 chr3 211229293 211230787 -16293791 + LTR49-int LTR ERV1 4595 6059 -272 1353 76 6 0 chr3 211230903 211231074 -16293504 - AluSp SINE Alu -141 172 1 22 0 0 0 chr3 211231378 211231400 -16293178 + AT_rich Low_complexity Low_complexity 1 22 0 387 308 77 43 chr3 211231613 211231821 -16292757 - MIR SINE MIR -42 220 6 23 0 0 0 chr3 211231864 211231887 -16292691 + AT_rich Low_complexity Low_complexity 1 23 0 270 400 73 30 chr3 211232563 211232932 -16291646 - L2 LINE L2 -164 3108 2721 828 173 6 6 chr3 211233258 211233414 -16291164 - L1MC2 LINE L1 -29 6315 6160 582 352 101 28 chr3 211233813 211234455 -16290123 - L2 LINE L2 -556 2758 2070 1416 119 5 5 chr3 211234901 211235094 -16289484 + AluSp SINE Alu 1 193 -120 373 125 16 0 chr3 211235205 211235269 -16289309 + AluSp/q SINE Alu 232 296 -7 1076 172 6 0 chr3 211235661 211235835 -16288743 + MER5B DNA MER1_type 4 178 0 275 212 34 110 chr3 211236318 211236464 -16288114 - HAL1b LINE L1 -8 1340 1206 7884 160 18 15 chr3 211236594 211239088 -16285490 - L1MA4 LINE L1 -5 6295 3787 307 239 28 0 chr3 211239093 211239164 -16285414 - Tigger2 DNA MER2_type 0 2718 2646 428 181 11 0 chr3 211239164 211239258 -16285320 - L1PA16 LINE L1 -151 6015 5921 521 228 107 15 chr3 211239341 211239547 -16285031 - HAL1b LINE L1 -494 854 630 357 62 0 0 chr3 211239637 211239685 -16284893 - L1P LINE L1 -2458 3688 3641 * 4903 154 27 12 chr3 211239684 211240910 -16283668 - L1PA16 LINE L1 -49 6768 5522 7723 215 25 48 chr3 211240933 211241582 -16282996 - L1PA16 LINE L1 -2340 4457 3795 1593 165 72 17 chr3 211241582 211241873 -16282705 - AluJb SINE Alu -5 307 1 7723 215 25 48 chr3 211241873 211244506 -16280072 - L1PA16 LINE L1 -3002 3795 1264 2432 74 0 7 chr3 211244601 211244910 -16279668 - AluSq SINE Alu -6 307 1 467 251 103 11 chr3 211244969 211245144 -16279434 + MIR SINE MIR 72 262 0 445 275 198 24 chr3 211247782 211247989 -16276589 + MIR SINE MIR 2 244 -18 297 268 127 7 chr3 211248152 211248294 -16276284 + L1ME4a LINE L1 5512 5670 -451 21 57 0 0 chr3 211248511 211248546 -16276032 + AT_rich Low_complexity Low_complexity 1 35 0 257 213 46 37 chr3 211248605 211248713 -16275865 + L1ME4a LINE L1 5964 6072 -49 599 195 0 32 chr3 211249573 211249696 -16274882 + AluJo SINE Alu 2 120 -192 1546 147 24 12 chr3 211249821 211250073 -16274505 + AluSx SINE Alu 30 284 -28 290 65 0 22 chr3 211250079 211250125 -16274453 + (CAA)n Simple_repeat Simple_repeat 2 46 0 1703 187 32 0 chr3 211250691 211250974 -16273604 - AluJb SINE Alu -18 294 3 644 213 154 5 chr3 211251180 211251368 -16273210 + LTR49-int LTR ERV1 5077 5292 -1039 1082 149 90 11 chr3 211251476 211251664 -16272914 + AluJo SINE Alu 97 299 -13 2189 119 72 17 chr3 211251932 211252277 -16272301 - THE1B LTR MaLR 0 364 1 301 314 141 11 chr3 211253021 211253212 -16271366 + L2 LINE L2 2923 3138 -175 828 242 92 25 chr3 211253234 211253515 -16271063 + L2 LINE L2 3011 3310 -3 180 291 0 0 chr3 211253527 211253582 -16270996 + L2 LINE L2 1423 1477 -1837 905 220 104 5 chr3 211253593 211253814 -16270764 - MIR SINE MIR -21 241 4 212 365 56 9 chr3 211253814 211253879 -16270699 + L2 LINE L2 1511 1580 -1734 400 235 88 22 chr3 211253887 211254023 -16270555 + L2 LINE L2 2206 2350 -964 801 116 8 8 chr3 211254141 211254262 -16270316 - AluSq/x SINE Alu -191 121 1 817 300 126 15 chr3 211254291 211254858 -16269720 - L1MC4a LINE L1 -743 5403 5209 288 0 0 0 chr3 211254924 211254956 -16269622 + (TG)n Simple_repeat Simple_repeat 2 33 0 940 156 247 9 chr3 211255434 211255665 -16268913 - AluY SINE Alu -23 288 3 322 264 13 39 chr3 211256158 211256313 -16268265 + CT-rich Low_complexity Low_complexity 4 154 0 1208 127 0 0 chr3 211256925 211257090 -16267488 - AluSg/x SINE Alu -14 298 134 2463 84 0 3 chr3 211257090 211257400 -16267178 - AluSq SINE Alu -4 309 1 2407 74 10 7 chr3 211258637 211258947 -16265631 - AluY SINE Alu 0 311 1 381 235 25 12 chr3 211259098 211259179 -16265399 - L2 LINE L2 -38 3234 3153 3124 215 36 33 chr3 211259229 211259949 -16264629 - MER21B LTR ERV1 -141 722 1 406 230 8 24 chr3 211260228 211260354 -16264224 - L1MC4a LINE L1 -2096 4050 3927 5873 145 26 46 chr3 211260498 211261189 -16263389 - L1PB2 LINE L1 -1 6150 5446 10640 58 21 15 chr3 211261189 211262564 -16262014 - SVA Other Other -3 1383 1 5873 145 26 46 chr3 211262564 211264016 -16260562 - L1PB2 LINE L1 -705 5446 4060 24 53 0 0 chr3 211266059 211266097 -16258481 + AT_rich Low_complexity Low_complexity 1 38 0 1018 297 77 46 chr3 211266339 211266871 -16257707 - L2 LINE L2 0 3313 2776 330 246 34 145 chr3 211267301 211267508 -16257070 + L1ME4a LINE L1 5373 5556 -2252 471 158 12 0 chr3 211267509 211267591 -16256987 - MER46C DNA MER2_type -1 337 255 4413 234 25 37 chr3 211267648 211268741 -16255837 + L1MEc LINE L1 107 1186 -5210 1738 181 16 7 chr3 211268741 211269044 -16255534 + AluJb SINE Alu 1 306 -6 4413 234 25 37 chr3 211269044 211269170 -16255408 + L1MEc LINE L1 1186 1312 -5084 865 293 76 60 chr3 211269166 211270219 -16254359 + L1ME LINE L1 304 1373 -4999 * 266 169 52 6 chr3 211270227 211270399 -16254179 + (TA)n Simple_repeat Simple_repeat 1 180 0 521 308 99 28 chr3 211270416 211270738 -16253840 + L1ME LINE L1 1250 1594 -4790 3389 109 15 56 chr3 211270778 211271311 -16253267 - MER9 LTR ERVK 0 511 1 43829 82 7 6 chr3 211271311 211277315 -16247263 - HERVK9 LTR ERVK 0 8033 1 3495 119 32 4 chr3 211277315 211277372 -16247206 - MER9 LTR ERVK 0 511 457 189 0 0 0 chr3 211277372 211277393 -16247185 + (CA)n Simple_repeat Simple_repeat 2 22 0 3495 119 32 4 chr3 211277393 211277832 -16246746 - MER9 LTR ERVK -54 457 1 626 195 7 54 chr3 211277878 211278027 -16246551 - MER46C DNA MER2_type -194 144 3 369 209 54 88 chr3 211278188 211278336 -16246242 + L1ME4a LINE L1 5725 5867 -254 359 270 74 0 chr3 211278339 211278487 -16246091 + L1ME4a LINE L1 5960 6118 -3 1546 207 13 10 chr3 211278494 211278793 -16245785 - AluJb SINE Alu -12 300 1 2183 117 3 3 chr3 211278815 211279113 -16245465 + AluSx SINE Alu 1 298 -14 2785 101 16 0 chr3 211279998 211280363 -16244215 + THE1C LTR MaLR 1 371 -4 1275 249 51 46 chr3 211280403 211281014 -16243564 - L1MEc LINE L1 -2583 3563 2950 636 207 99 80 chr3 211280996 211281310 -16243268 - L1ME2 LINE L1 0 6164 5845 * 750 239 91 19 chr3 211281299 211281439 -16243139 - L1MEc LINE L1 -3656 2490 2361 1409 132 151 18 chr3 211281439 211281711 -16242867 + AluYa5 SINE Alu 1 308 -3 750 239 91 19 chr3 211281711 211281885 -16242693 - L1MEc LINE L1 -3785 2361 2177 2384 101 3 0 chr3 211282744 211283052 -16241526 + AluSq SINE Alu 1 309 -4 486 283 119 32 chr3 211283813 211284032 -16240546 + MIR SINE MIR 7 244 -18 188 333 56 14 chr3 211284035 211284107 -16240471 - MIR3 SINE MIR -130 78 4 1364 188 175 0 chr3 211284136 211284428 -16240150 - MER2 DNA MER2_type -1 343 1 2253 102 3 0 chr3 211284430 211284723 -16239855 - AluSg SINE Alu -7 303 10 2254 108 0 10 chr3 211284725 211285032 -16239546 - AluSc SINE Alu -5 304 1 2746 39 0 0 chr3 211285256 211285565 -16239013 - AluY SINE Alu -2 309 1 190 336 36 45 chr3 211286293 211286403 -16238175 - L2 LINE L2 -195 3077 2969 234 364 24 48 chr3 211286518 211286683 -16237895 - L2 LINE L2 -624 2690 2530 315 261 123 51 chr3 211286789 211286927 -16237651 + L2 LINE L2 3164 3311 -2 2110 118 10 7 chr3 211287591 211287887 -16236691 - AluSx SINE Alu -15 297 1 220 283 160 19 chr3 211288589 211288695 -16235883 - L2 LINE L2 -5 3308 3188 1061 154 18 12 chr3 211288796 211288965 -16235613 - AluJo SINE Alu -24 288 119 252 0 0 0 chr3 211289087 211289115 -16235463 + (T)n Simple_repeat Simple_repeat 1 28 0 405 379 152 0 chr3 211289606 211289883 -16234695 + L3 LINE CR1 1258 1576 -1 2297 108 0 0 chr3 211289905 211290201 -16234377 + AluSx SINE Alu 1 296 -16 1467 226 32 26 chr3 211290284 211290661 -16233917 - MER92B LTR ERV1 -8 628 250 5300 158 29 25 chr3 211290681 211290692 -16233886 - L1MC2 LINE L1 -9 6335 6326 2400 67 0 7 chr3 211290692 211290989 -16233589 - AluY SINE Alu -16 295 1 5300 158 29 25 chr3 211290989 211291956 -16232622 - L1MC2 LINE L1 -18 6326 5353 1643 141 40 0 chr3 211291948 211292349 -16232229 - L1PA16 LINE L1 -4 6162 5709 * 1376 155 22 15 chr3 211292343 211292632 -16231946 - L1PA16 LINE L1 -691 5475 5189 * 340 88 0 29 chr3 211292632 211292700 -16231878 + (TTG)n Simple_repeat Simple_repeat 1 66 0 1376 155 22 15 chr3 211292700 211292821 -16231757 - L1PA16 LINE L1 -977 5189 5070 * 8006 199 13 17 chr3 211292817 211294561 -16230017 + L1 LINE L1 3183 4919 -1227 4575 245 76 45 chr3 211294907 211297172 -16227406 - L1M4c LINE L1 -4437 2701 218 1291 144 10 0 chr3 211297290 211297484 -16227094 - MSTB1 LTR MaLR 0 432 237 520 178 54 99 chr3 211297484 211297677 -16226901 - LTR45B LTR ERV1 0 489 324 1329 147 21 13 chr3 211298021 211298259 -16226319 - MSTB1 LTR MaLR -192 240 1 457 300 260 24 chr3 211298283 211298787 -16225791 - L3 LINE CR1 -70 1507 885 222 262 75 93 chr3 211298892 211298942 -16225636 - L3 LINE CR1 -907 670 621 2320 96 0 7 chr3 211298942 211299244 -16225334 + AluSq SINE Alu 1 300 -13 222 262 75 93 chr3 211299244 211299300 -16225278 - L3 LINE CR1 -956 621 566 21 0 0 0 chr3 211300807 211300828 -16223750 + AT_rich Low_complexity Low_complexity 1 21 0 215 295 181 0 chr3 211301243 211301348 -16223230 + MIR SINE MIR 65 188 -74 2368 101 0 0 chr3 211301929 211302227 -16222351 + AluSq SINE Alu 1 298 -15 786 259 28 19 chr3 211302285 211302501 -16222077 + MIR SINE MIR 31 248 -14 2164 121 14 0 chr3 211303510 211303807 -16220771 + AluSx SINE Alu 1 301 -11 318 311 78 10 chr3 211304523 211304626 -16219952 - MIR SINE MIR -80 128 19 475 286 204 29 chr3 211304667 211304878 -16219700 - MIR SINE MIR 0 262 17 240 289 154 0 chr3 211304952 211305056 -16219522 - L2 LINE L2 -1 3271 3152 526 339 17 46 chr3 211305274 211305513 -16219065 - MIR SINE MIR -19 243 12 543 366 62 0 chr3 211305642 211305866 -16218712 - MIR SINE MIR 0 262 25 395 195 259 29 chr3 211306953 211307127 -16217451 - MLT1J LTR MaLR -11 500 287 * 456 262 77 18 chr3 211307125 211307293 -16217285 - MLT1J LTR MaLR -332 179 2 222 362 126 5 chr3 211307493 211307692 -16216886 + L2 LINE L2 2563 2785 -529 25 0 0 0 chr3 211308140 211308165 -16216413 + AT_rich Low_complexity Low_complexity 1 25 0 194 205 90 13 chr3 211308572 211308650 -16215928 + MIR SINE MIR 21 104 -158 393 299 31 39 chr3 211309653 211309780 -16214798 - MIR3 SINE MIR -32 176 51 2198 101 0 0 chr3 211311031 211311327 -16213251 - AluSq SINE Alu -17 296 1 287 281 269 25 chr3 211311360 211311520 -16213058 + MIR SINE MIR 58 256 -6 404 257 46 13 chr3 211311660 211311798 -16212780 - MIR SINE MIR -52 156 15 14123 163 54 34 chr3 211311929 211312057 -16212521 + L1MA5A LINE L1 2038 2162 -4371 2108 92 0 20 chr3 211312057 211312350 -16212228 + AluSg SINE Alu 1 287 -23 14123 163 54 34 chr3 211312350 211313563 -16211015 + L1MA5A LINE L1 2162 3350 -3183 1678 140 13 33 chr3 211313563 211313863 -16210715 - AluJo SINE Alu -18 294 1 14123 163 54 34 chr3 211313863 211314403 -16210175 + L1MA5A LINE L1 3350 3878 -2655 1966 128 7 0 chr3 211314403 211314709 -16209869 + AluSx SINE Alu 1 308 0 14123 163 54 34 chr3 211314709 211315449 -16209129 + L1MA5A LINE L1 3878 4602 -1931 1613 195 3 0 chr3 211315449 211315756 -16208822 + AluJb SINE Alu 1 308 -4 14123 163 54 34 chr3 211315756 211316535 -16208043 + L1MA5A LINE L1 4602 5364 -1169 1724 159 30 10 chr3 211316535 211316837 -16207741 + AluJb SINE Alu 1 308 -4 14123 163 54 34 chr3 211316837 211317798 -16206780 + L1MA5A LINE L1 5364 6305 -228 2024 117 177 14 chr3 211317798 211318166 -16206412 + MSTA LTR MaLR 1 428 0 9909 116 41 28 chr3 211318168 211319725 -16204853 + MSTA-int LTR MaLR 3 1580 0 1854 122 202 17 chr3 211319725 211320086 -16204492 + MSTA LTR MaLR 1 428 0 14123 163 54 34 chr3 211320086 211320123 -16204455 + L1MA5A LINE L1 6304 6526 -7 364 192 19 10 chr3 211320185 211320289 -16204289 + CT-rich Low_complexity Low_complexity 4 108 0 1342 209 111 22 chr3 211320291 211320606 -16203972 + MLT1F LTR MaLR 192 534 -8 3582 141 41 25 chr3 211320634 211320976 -16203602 + L1M2 LINE L1 4697 5032 -1259 1844 153 0 10 chr3 211320976 211321271 -16203307 + AluJb SINE Alu 1 292 -20 3582 141 41 25 chr3 211321271 211321902 -16202676 + L1M2 LINE L1 5032 5675 -616 4960 148 48 18 chr3 211322125 211322628 -16201950 + L1MA8 LINE L1 5320 5866 -425 1978 94 0 4 chr3 211322628 211322905 -16201673 + AluY SINE Alu 35 310 -1 4960 148 48 18 chr3 211322905 211323345 -16201233 + L1MA8 LINE L1 5866 6291 0 959 134 35 0 chr3 211324132 211324363 -16200215 + MSTA LTR MaLR 1 199 -229 1913 117 31 0 chr3 211324364 211324655 -16199923 + AluSx SINE Alu 1 300 -12 964 171 0 12 chr3 211324655 211324825 -16199753 + AluSg/x SINE Alu 134 301 -11 1430 143 43 0 chr3 211324825 211325055 -16199523 + MSTA LTR MaLR 189 428 0 3366 159 30 74 chr3 211325073 211325833 -16198745 - LTR8A LTR ERV1 0 727 1 1801 114 75 0 chr3 211326325 211326605 -16197973 - AluSx SINE Alu -11 301 1 1279 180 30 120 chr3 211326698 211327053 -16197525 + MLT1A1 LTR MaLR 1 318 -47 2060 98 0 0 chr3 211327053 211327329 -16197249 - AluSx SINE Alu -36 276 1 1279 180 30 120 chr3 211327329 211327374 -16197204 + MLT1A1 LTR MaLR 318 365 0 316 247 45 0 chr3 211328746 211328835 -16195743 - L2 LINE L2 -18 3295 3203 223 179 63 116 chr3 211330450 211330545 -16194033 + L2 LINE L2 3162 3251 -21 717 296 208 0 chr3 211330567 211330996 -16193582 - L1ME3A LINE L1 -2 6168 5651 2223 105 0 0 chr3 211331054 211331358 -16193220 - AluSg SINE Alu -2 308 5 1523 181 20 17 chr3 211332093 211332392 -16192186 - AluJb SINE Alu -12 300 1 2060 106 7 13 chr3 211332562 211332865 -16191713 - AluSc SINE Alu -8 301 1 2257 99 0 0 chr3 211333910 211334214 -16190364 + AluSg SINE Alu 5 308 -2 234 224 106 47 chr3 211334483 211334568 -16190010 + MIR SINE MIR 13 102 -160 547 239 54 30 chr3 211335887 211336054 -16188524 + MIR SINE MIR 16 186 -76 2376 75 0 0 chr3 211337595 211337900 -16186678 + AluY SINE Alu 1 305 -6 1997 99 10 10 chr3 211339731 211340023 -16184555 + AluSc SINE Alu 1 292 -17 1726 111 96 0 chr3 211342522 211342792 -16181786 + AluSx SINE Alu 1 296 -16 569 218 78 21 chr3 211343543 211343685 -16180893 - MER20 DNA MER1_type 0 219 70 1572 168 91 28 chr3 211344910 211345262 -16179316 + MLT1A2 LTR MaLR 1 374 0 2928 143 51 4 chr3 211345894 211346427 -16178151 + L1MB3 LINE L1 5619 6176 -7 2130 98 7 0 chr3 211346510 211346807 -16177771 - AluSp SINE Alu -14 299 1 250 194 60 45 chr3 211346866 211346933 -16177645 + L1MD1 LINE L1 5259 5313 -853 * 918 208 41 18 chr3 211346931 211347152 -16177426 + L1MD1 LINE L1 6016 6241 -1 1147 157 115 107 chr3 211347158 211347514 -16177064 - L1MC4a LINE L1 -419 7389 7031 216 67 0 0 chr3 211347845 211347875 -16176703 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 778 212 199 0 chr3 211347875 211348101 -16176477 - L1MC4a LINE L1 -826 6982 6712 24 0 0 0 chr3 211348239 211348263 -16176315 + AT_rich Low_complexity Low_complexity 1 24 0 21 57 0 0 chr3 211349197 211349232 -16175346 + AT_rich Low_complexity Low_complexity 1 35 0 266 238 22 25 chr3 211350197 211350273 -16174305 + MIR SINE MIR 2 75 -133 1113 138 0 0 chr3 211350280 211350447 -16174131 - AluSx SINE Alu -11 301 135 454 225 11 0 chr3 211350468 211350557 -16174021 - L1MC4 LINE L1 -1339 6703 6614 965 76 15 0 chr3 211350562 211350693 -16173885 - AluSx SINE Alu -180 133 1 528 201 103 57 chr3 211351083 211351277 -16173301 - L2 LINE L2 -12 3301 3099 2228 107 0 0 chr3 211351308 211351608 -16172970 + AluSc SINE Alu 1 300 -9 333 132 19 0 chr3 211351624 211351677 -16172901 - Tigger4(Zombi) DNA MER2_type 0 2731 2678 958 196 139 57 chr3 211352467 211352670 -16171908 + MER2 DNA MER2_type 1 241 -103 2037 123 10 0 chr3 211352670 211352970 -16171608 - AluSx SINE Alu -9 303 1 958 196 139 57 chr3 211352970 211353083 -16171495 + MER2 DNA MER2_type 241 343 -1 2264 80 3 3 chr3 211354329 211354628 -16169950 - AluSc SINE Alu -10 299 1 338 268 122 18 chr3 211355076 211355240 -16169338 + LTR41 LTR ERVL 1 181 -592 236 191 0 48 chr3 211355650 211355713 -16168865 + LTR41 LTR ERVL 700 759 -14 1000 215 58 25 chr3 211357316 211357635 -16166943 + MLT2D LTR ERVL 82 414 0 17728 173 28 8 chr3 211357713 211360044 -16164534 + L1P4 LINE L1 1529 3811 -2350 2235 125 100 8 chr3 211360044 211360435 -16164143 - MSTA LTR MaLR -1 427 1 17728 173 28 8 chr3 211360435 211361553 -16163025 + L1P4 LINE L1 3811 5061 -1100 2210 103 0 10 chr3 211361553 211361845 -16162733 + AluSx SINE Alu 1 289 -23 17728 173 28 8 chr3 211361845 211362249 -16162329 + L1P4 LINE L1 5061 5455 -706 407 232 36 9 chr3 211362381 211362493 -16162085 + LTR25 LTR ERV1 249 363 -431 972 149 17 0 chr3 211362669 211362844 -16161734 + MER61E LTR ERV1 341 518 -51 4971 85 15 1 chr3 211362877 211363561 -16161017 + L1PA13 LINE L1 5452 6144 -19 603 229 55 5 chr3 211363564 211363765 -16160813 + L1MEc LINE L1 760 970 -5426 3657 100 4 4 chr3 211363796 211364307 -16160271 + MER9 LTR ERVK 1 511 0 4214 66 12 4 chr3 211364307 211364870 -16159708 + HERVK9 LTR ERVK 1 568 -5348 12237 54 1 1 chr3 211364872 211366438 -16158140 + HERVK9 LTR ERVK 1114 2678 -3238 * 17406 68 4 3 chr3 211366435 211368751 -16155827 + HERVK9 LTR ERVK 3317 5634 -282 2185 61 4 0 chr3 211368847 211369127 -16155451 + HERVK9 LTR ERVK 5635 5915 -1 3593 105 2 10 chr3 211369128 211369643 -16154935 + MER9 LTR ERVK 1 511 0 1591 173 97 13 chr3 211369643 211370243 -16154335 + L1M4 LINE L1 4935 5576 -602 951 231 145 18 chr3 211370262 211370600 -16153978 + L1M3d LINE L1 675 1055 -4836 949 228 42 3 chr3 211370763 211371048 -16153530 + L1M3de LINE L1 1518 1813 -4840 2132 109 10 7 chr3 211371048 211371341 -16153237 + AluSx SINE Alu 1 294 -18 972 85 31 8 chr3 211372202 211372331 -16152247 + AluY SINE Alu 1 132 -179 2176 103 3 20 chr3 211372957 211373259 -16151319 + AluSp SINE Alu 1 297 -16 326 283 172 7 chr3 211373712 211373857 -16150721 - MIR3 SINE MIR -1 207 39 370 266 95 89 chr3 211373947 211374060 -16150518 + MIR3 SINE MIR 32 148 -60 560 270 0 54 chr3 211374060 211374245 -16150333 - MER5B DNA MER1_type 0 178 4 370 266 95 89 chr3 211374245 211374300 -16150278 + MIR3 SINE MIR 148 201 -7 1396 188 74 34 chr3 211374706 211375057 -16149521 - MLT1A1 LTR MaLR 0 365 1 1061 171 78 10 chr3 211375484 211375689 -16148889 - MER20 DNA MER1_type 0 219 1 264 233 67 0 chr3 211375758 211375818 -16148760 - MIR3 SINE MIR -1 207 144 2434 53 0 10 chr3 211375821 211376120 -16148458 - AluY SINE Alu -15 296 1 357 24 0 0 chr3 211376449 211376491 -16148087 + (CA)n Simple_repeat Simple_repeat 1 42 0 240 35 0 0 chr3 211376490 211376519 -16148059 + (GA)n Simple_repeat Simple_repeat 2 30 0 * 559 290 65 50 chr3 211376620 211376882 -16147696 + L2 LINE L2 2648 2913 -401 469 273 151 40 chr3 211376953 211377231 -16147347 + L2 LINE L2 3005 3313 0 544 311 74 67 chr3 211377285 211377568 -16147010 + L2 LINE L2 2974 3258 -14 512 128 17 60 chr3 211378293 211378410 -16146168 + L1MA9 LINE L1 6019 6130 -182 1048 79 0 0 chr3 211378410 211378537 -16146041 + AluSc SINE Alu 1 127 -182 2370 94 7 3 chr3 211378783 211379091 -16145487 + AluSc SINE Alu 1 309 0 674 285 71 100 chr3 211379278 211379466 -16145112 - L2 LINE L2 0 3313 3121 5756 83 39 11 chr3 211379466 211380404 -16144174 + L1PB1 LINE L1 5190 6151 0 674 285 71 100 chr3 211380404 211380735 -16143843 - L2 LINE L2 -192 3121 2809 877 226 22 47 chr3 211380742 211380857 -16143721 + L1ME1 LINE L1 2171 2287 -3859 2383 84 0 0 chr3 211380857 211381156 -16143422 + AluY SINE Alu 1 299 -12 877 226 22 47 chr3 211381156 211381359 -16143219 + L1ME1 LINE L1 2287 2481 -3665 278 143 0 0 chr3 211381361 211381403 -16143175 - MER2 DNA MER2_type -3 342 301 654 138 18 0 chr3 211381404 211381513 -16143065 + Ricksha_b DNA DNA 1 111 -1143 5426 140 33 34 chr3 211381533 211381913 -16142665 + Ricksha_b DNA DNA 239 618 -2236 2259 86 0 70 chr3 211381913 211382240 -16142338 + AluSx SINE Alu 1 304 -8 5426 140 33 34 chr3 211382240 211382547 -16142031 + Ricksha_b DNA DNA 618 924 -1930 753 195 0 0 chr3 211382547 211382675 -16141903 - FLAM_A SINE Alu -2 131 4 5426 140 33 34 chr3 211382675 211382994 -16141584 + Ricksha_b DNA DNA 924 1245 -9 1816 139 20 3 chr3 211383003 211383306 -16141272 - MER2 DNA MER2_type -37 308 1 753 204 12 0 chr3 211383366 211383533 -16141045 + L1ME1 LINE L1 4625 4793 -1353 2284 215 68 34 chr3 211383587 211384137 -16140441 + L1ME1 LINE L1 5000 5530 -636 2227 81 3 3 chr3 211384137 211384475 -16140103 + AluSp SINE Alu 1 338 0 2284 215 68 34 chr3 211384475 211385094 -16139484 + L1ME1 LINE L1 5530 6151 -15 303 125 78 16 chr3 211385744 211385808 -16138770 - MER45 DNA AcHobo -1 1580 1513 2220 116 0 13 chr3 211386468 211386779 -16137799 - AluSx SINE Alu -5 307 1 2186 103 13 0 chr3 211387286 211387588 -16136990 + AluSx SINE Alu 1 306 -6 25 0 0 0 chr3 211388074 211388099 -16136479 + AT_rich Low_complexity Low_complexity 1 25 0 3691 127 91 5 chr3 211388154 211388783 -16135795 - L1PA16 LINE L1 -12 6154 5472 2076 72 0 15 chr3 211389208 211389472 -16135106 + AluY SINE Alu 1 260 -51 3657 174 28 7 chr3 211389495 211390240 -16134338 - L1MB7 LINE L1 -16 6168 5408 404 339 96 5 chr3 211390602 211390820 -16133758 + L1MC/D LINE L1 1 238 -5881 526 256 75 109 chr3 211391013 211392107 -16132471 + L1MC/D LINE L1 465 1556 -4754 * 1700 208 26 13 chr3 211392104 211392494 -16132084 + L1MC/D LINE L1 5366 5760 -2031 1872 129 20 20 chr3 211392500 211392803 -16131775 + AluSx SINE Alu 1 303 -9 1987 140 0 7 chr3 211392865 211393150 -16131428 + AluJo SINE Alu 20 302 -10 2909 185 276 35 chr3 211393330 211394375 -16130203 + L1MD1 LINE L1 6 1301 -5239 984 104 0 49 chr3 211394378 211394522 -16130056 + AluSq/x SINE Alu 1 137 -175 1896 114 42 0 chr3 211394522 211394829 -16129749 + L1MA4A LINE L1 5979 6298 -5 4286 240 58 24 chr3 211394844 211395345 -16129233 + L1MD1 LINE L1 2358 2840 -3700 1953 97 13 60 chr3 211395345 211395481 -16129097 + AluSx SINE Alu 1 142 -183 2184 42 14 21 chr3 211395481 211395789 -16128789 + AluY SINE Alu 1 306 0 1953 97 13 60 chr3 211395789 211395990 -16128588 + AluSx SINE Alu 142 325 0 4286 240 58 24 chr3 211395990 211396057 -16128521 + L1MD1 LINE L1 2840 2903 -3637 1978 118 84 32 chr3 211396057 211396403 -16128175 + THE1B LTR MaLR 1 364 0 4286 240 58 24 chr3 211396403 211397856 -16126722 + L1MD1 LINE L1 2903 4446 -2094 1893 132 21 21 chr3 211397857 211398145 -16126433 + AluJo SINE Alu 1 288 -24 359 174 9 28 chr3 211398145 211398254 -16126324 + GA-rich Low_complexity Low_complexity 1 107 0 2333 88 7 0 chr3 211398310 211398606 -16125972 + AluSx SINE Alu 1 298 -14 3457 150 69 62 chr3 211398623 211399072 -16125506 + L1MD1 LINE L1 5129 5573 -1063 787 182 245 5 chr3 211399072 211399264 -16125314 + MER8 DNA MER2_type 1 238 -1 3457 150 69 62 chr3 211399264 211399551 -16125027 + L1MD1 LINE L1 5573 5856 -780 1699 189 13 40 chr3 211399551 211399708 -16124870 + MLT1A1 LTR MaLR 1 161 -204 2109 97 6 61 chr3 211399708 211400037 -16124541 + AluSx SINE Alu 1 311 -1 1699 189 13 40 chr3 211400037 211400254 -16124324 + MLT1A1 LTR MaLR 161 365 0 3457 150 69 62 chr3 211400254 211400765 -16123813 + L1MD1 LINE L1 5856 6367 -269 315 0 0 0 chr3 211400841 211400876 -16123702 + (CA)n Simple_repeat Simple_repeat 2 36 0 2365 268 95 25 chr3 211400876 211401217 -16123361 + L1MC4 LINE L1 6703 7019 -1023 1346 165 109 4 chr3 211401217 211401483 -16123095 + AluJo SINE Alu 1 294 -18 2365 268 95 25 chr3 211401483 211402210 -16122368 + L1MC4 LINE L1 7019 7846 -196 181 220 60 20 chr3 211402471 211402521 -16122057 - MIR SINE MIR -118 144 93 270 0 0 0 chr3 211403021 211403051 -16121527 + (CA)n Simple_repeat Simple_repeat 2 31 0 419 243 107 7 chr3 211403252 211403392 -16121186 - MIR SINE MIR -82 180 27 258 116 0 174 chr3 211403482 211403508 -16121070 - MIR SINE MIR -48 214 206 2261 116 3 0 chr3 211403508 211403810 -16120768 - AluSx SINE Alu -9 303 1 258 116 0 174 chr3 211403810 211403852 -16120726 - MIR SINE MIR -56 206 158 243 198 363 11 chr3 211403853 211403944 -16120634 - FLAM_A SINE Alu -9 124 2 319 291 36 9 chr3 211403954 211404064 -16120514 - MIR SINE MIR -109 153 41 447 214 8 51 chr3 211404769 211404886 -16119692 + MIR SINE MIR 122 233 -29 2602 65 0 0 chr3 211405316 211405626 -16118952 - AluSp SINE Alu -2 311 2 244 339 31 15 chr3 211406412 211406542 -16118036 + L2 LINE L2 1919 2050 -1264 336 259 153 8 chr3 211406561 211406692 -16117886 + MIR SINE MIR 1 150 -112 858 313 62 39 chr3 211406985 211407553 -16117025 + L2 LINE L2 1989 2569 -745 2379 96 3 0 chr3 211408150 211408452 -16116126 + AluSq SINE Alu 1 303 -10 1686 325 60 51 chr3 211408801 211409950 -16114628 + L3 LINE CR1 96 1254 -323 404 355 29 0 chr3 211410104 211410276 -16114302 + L3 LINE CR1 1279 1455 -122 180 111 0 0 chr3 211411352 211411379 -16113199 + (A)n Simple_repeat Simple_repeat 1 27 0 220 157 59 0 chr3 211412079 211412130 -16112448 + (CG)n Simple_repeat Simple_repeat 2 55 0 188 147 29 29 chr3 211412804 211412872 -16111706 + (TG)n Simple_repeat Simple_repeat 1 68 0 202 222 34 68 chr3 211412886 211413062 -16111516 + (GTGTG)n Simple_repeat Simple_repeat 1 170 0 * 278 261 39 26 chr3 211412975 211413128 -16111450 + (TG)n Simple_repeat Simple_repeat 1 155 0 771 184 16 98 chr3 211414648 211414893 -16109685 - L1MC5 LINE L1 -28 7933 7709 2330 100 0 0 chr3 211415011 211415301 -16109277 + AluSx SINE Alu 2 291 -21 2005 123 29 0 chr3 211415316 211415629 -16108949 + AluSx SINE Alu 2 322 0 1411 242 119 33 chr3 211416064 211416589 -16107989 - MLT1F1 LTR MaLR 0 567 1 817 268 59 80 chr3 211416589 211417015 -16107563 + MLT1H LTR MaLR 133 549 0 191 345 0 0 chr3 211417019 211417074 -16107504 - MIR SINE MIR -55 153 99 285 284 11 0 chr3 211417129 211417217 -16107361 + MIR SINE MIR 53 141 -67 520 318 103 0 chr3 211417675 211417889 -16106689 + MIR SINE MIR 20 255 -7 211 321 123 34 chr3 211417968 211418306 -16106272 + L2 LINE L2 2690 3057 -215 2187 109 3 0 chr3 211418624 211418946 -16105632 - AluSg SINE Alu 0 323 1 293 279 0 0 chr3 211419876 211419944 -16104634 - L2 LINE L2 0 3272 3205 1547 230 143 26 chr3 211420453 211420945 -16103633 + MLT1F1 LTR MaLR 8 567 0 247 286 29 0 chr3 211421401 211421471 -16103107 - Charlie8 DNA MER1_type -1000 1417 1346 570 312 35 9 chr3 211421641 211421872 -16102706 + MIR SINE MIR 20 256 -6 1481 145 38 116 chr3 211422709 211423054 -16101524 + AluYb8 SINE Alu 1 318 0 2065 116 34 7 chr3 211423063 211423357 -16101221 - AluSx SINE Alu -10 302 1 2294 86 0 51 chr3 211424373 211424688 -16099890 - AluSx SINE Alu -11 301 3 1752 140 23 47 chr3 211424980 211425280 -16099298 + AluJo SINE Alu 1 293 -19 992 218 229 38 chr3 211425342 211425699 -16098879 - MLT1G LTR MaLR 0 583 295 2137 91 31 3 chr3 211425699 211425985 -16098593 + AluSp SINE Alu 1 294 -19 992 218 229 38 chr3 211425985 211426137 -16098441 - MLT1G LTR MaLR -288 295 1 2210 104 10 3 chr3 211426187 211426494 -16098084 - AluSx SINE Alu -2 310 2 1878 153 3 19 chr3 211426693 211427001 -16097577 - AluJo SINE Alu -9 303 1 906 267 20 20 chr3 211427610 211427865 -16096713 - MIR SINE MIR -2 260 6 2251 114 0 0 chr3 211427920 211428228 -16096350 - AluSc SINE Alu -1 308 1 2278 106 0 0 chr3 211429014 211429307 -16095271 - AluSx SINE Alu -19 293 1 232 237 40 13 chr3 211429631 211429707 -16094871 + (TATG)n Simple_repeat Simple_repeat 1 78 0 219 188 0 0 chr3 211430263 211430311 -16094267 + (TA)n Simple_repeat Simple_repeat 1 48 0 418 273 42 0 chr3 211430362 211430505 -16094073 + MIR SINE MIR 90 238 -24 437 258 172 7 chr3 211431599 211431750 -16092828 + MER5B DNA MER1_type 1 176 -2 513 199 90 48 chr3 211432135 211432301 -16092277 - MER69A DNA AcHobo -4 173 1 230 312 108 0 chr3 211432385 211432478 -16092100 - MIR SINE MIR -111 151 49 2231 95 7 7 chr3 211432764 211433059 -16091519 - AluSq SINE Alu -18 295 1 368 199 108 20 chr3 211433227 211433413 -16091165 + Charlie7 DNA MER1_type 1 2542 -70 701 211 23 123 chr3 211433414 211433473 -16091105 + MIR SINE MIR 4 67 -195 866 87 8 0 chr3 211433473 211433599 -16090979 + L1PA8 LINE L1 6046 6172 0 2279 91 10 10 chr3 211433608 211433917 -16090661 + AluSc SINE Alu 1 309 0 701 211 23 123 chr3 211433917 211434107 -16090471 + MIR SINE MIR 75 237 -25 22 0 0 0 chr3 211435531 211435553 -16089025 + AT_rich Low_complexity Low_complexity 1 22 0 850 108 100 0 chr3 211436341 211436461 -16088117 - AluSc SINE Alu -19 290 159 4271 236 83 89 chr3 211436750 211438056 -16086522 - L2 LINE L2 -1 3312 2000 1040 81 0 0 chr3 211438056 211438180 -16086398 + AluSg1 SINE Alu 1 124 -185 2073 121 28 0 chr3 211438181 211438471 -16086107 + AluSg1 SINE Alu 1 298 -11 4271 236 83 89 chr3 211438471 211439139 -16085439 - L2 LINE L2 -1312 2001 1218 265 275 32 101 chr3 211439645 211439863 -16084715 - L2 LINE L2 -3033 281 79 977 261 92 11 chr3 211439892 211440240 -16084338 + LTR16A LTR ERVL 55 430 -20 1660 328 63 13 chr3 211440255 211440939 -16083639 + HERV16 LTR ERVL 6 723 -4273 1442 346 76 30 chr3 211441325 211442387 -16082191 + ERVL LTR ERVL 3883 4993 -771 1997 147 3 3 chr3 211442653 211442953 -16081625 - AluSx SINE Alu -12 300 1 580 230 6 75 chr3 211442983 211443042 -16081536 - LTR16A LTR ERVL 0 450 389 549 125 23 0 chr3 211443042 211443161 -16081417 + L1PA16 LINE L1 6068 6188 0 580 230 6 75 chr3 211443161 211443259 -16081319 - LTR16A LTR ERVL -61 389 301 351 258 250 31 chr3 211443612 211443740 -16080838 - LTR16A LTR ERVL -279 171 16 228 232 66 55 chr3 211443742 211443923 -16080655 - Charlie7 DNA MER1_type -41 2571 2389 * 1857 213 68 104 chr3 211443896 211444023 -16080555 - Charlie7 DNA MER1_type -1902 710 580 2332 87 3 0 chr3 211444023 211444310 -16080268 - AluSq SINE Alu -25 288 1 1857 213 68 104 chr3 211444310 211444522 -16080056 - Charlie7 DNA MER1_type -2032 580 362 3519 119 4 4 chr3 211444522 211445061 -16079517 - L1MA5A LINE L1 0 6297 5759 1857 213 68 104 chr3 211445061 211445457 -16079121 - Charlie7 DNA MER1_type -2250 362 1 22 35 0 0 chr3 211445804 211445833 -16078745 + AT_rich Low_complexity Low_complexity 1 29 0 2192 119 0 0 chr3 211445861 211446156 -16078422 + AluSq SINE Alu 1 295 -18 194 0 39 0 chr3 211446200 211446226 -16078352 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1044 268 53 63 chr3 211446276 211446769 -16077809 - MLT1J LTR MaLR -14 497 10 758 149 91 0 chr3 211447162 211447283 -16077295 + AluJb SINE Alu 3 134 -178 21 36 0 0 chr3 211448210 211448238 -16076340 + AT_rich Low_complexity Low_complexity 1 28 0 2179 118 3 3 chr3 211448402 211448707 -16075871 - AluSx SINE Alu -7 305 1 2329 105 3 0 chr3 211448755 211449059 -16075519 - AluY SINE Alu -6 305 1 2306 100 3 3 chr3 211449213 211449523 -16075055 + AluY SINE Alu 1 310 -1 1010 161 32 42 chr3 211449947 211450164 -16074414 - L1MB8 LINE L1 0 6178 5964 1003 117 0 0 chr3 211450169 211450297 -16074281 - FLAM_C SINE Alu -15 128 1 977 119 0 13 chr3 211450297 211450456 -16074122 - L1MB8 LINE L1 -357 5827 5671 3790 181 15 48 chr3 211452746 211453228 -16071350 + L1MB7 LINE L1 4268 4764 -1382 1985 142 0 46 chr3 211453228 211453370 -16071208 + AluJo SINE Alu 1 148 -164 2128 115 4 0 chr3 211453370 211453649 -16070929 + AluSp SINE Alu 1 280 -33 342 0 0 0 chr3 211453649 211453687 -16070891 + (CAA)n Simple_repeat Simple_repeat 2 39 0 1985 142 0 46 chr3 211453687 211453868 -16070710 + AluJo SINE Alu 146 310 -2 3790 181 15 48 chr3 211453868 211454268 -16070310 + L1MB7 LINE L1 4764 5121 -1025 2006 176 3 3 chr3 211454265 211454629 -16069949 + L1MB7 LINE L1 5364 5727 -457 * 2162 122 26 11 chr3 211454629 211454980 -16069598 + L1PA16 LINE L1 5804 6160 -6 2267 133 50 25 chr3 211455350 211455444 -16069134 + L1MB7 LINE L1 5720 5810 -374 1914 119 0 0 chr3 211455444 211455697 -16068881 + AluSq SINE Alu 48 300 -13 2267 133 50 25 chr3 211455697 211455759 -16068819 + L1MB7 LINE L1 5810 5869 -315 1946 177 0 0 chr3 211455759 211456059 -16068519 + AluSx SINE Alu 1 300 -12 2267 133 50 25 chr3 211456059 211456298 -16068280 + L1MB7 LINE L1 5869 6126 -58 3436 135 41 42 chr3 211456329 211456832 -16067746 - L1MB3 LINE L1 -2 6181 5679 2371 105 0 0 chr3 211456832 211457136 -16067442 - AluSx SINE Alu -8 304 1 3436 135 41 42 chr3 211457136 211457246 -16067332 - L1MB3 LINE L1 -504 5679 5566 2267 115 0 6 chr3 211457246 211457560 -16067018 - AluSx SINE Alu 0 312 1 3436 135 41 42 chr3 211457560 211457581 -16066997 - L1MB3 LINE L1 -617 5566 5546 2060 141 0 16 chr3 211457606 211457912 -16066666 + AluSx SINE Alu 1 301 -11 230 143 54 0 chr3 211457926 211457982 -16066596 + L1MB7 LINE L1 6126 6184 0 325 253 147 53 chr3 211458316 211458541 -16066037 + MLT1J2 LTR MaLR 21 266 -184 889 186 71 9 chr3 211458558 211458768 -16065810 + MER58B DNA MER1_type 9 231 -110 800 207 6 17 chr3 211458770 211458949 -16065629 - AluJb SINE Alu 0 312 136 698 147 17 0 chr3 211458949 211459065 -16065513 + MER58B DNA MER1_type 223 340 -1 293 202 0 0 chr3 211459127 211459194 -16065384 + MLT1J2 LTR MaLR 317 428 -22 27 0 0 0 chr3 211459395 211459422 -16065156 + AT_rich Low_complexity Low_complexity 1 27 0 192 346 197 29 chr3 211459796 211460620 -16063958 - L2 LINE L2 -2052 1262 301 2258 109 0 3 chr3 211461095 211461397 -16063181 + AluSx SINE Alu 1 301 -11 2093 122 53 3 chr3 211461562 211461883 -16062695 + MER1B DNA MER1_type 1 337 0 654 199 5 2 chr3 211461925 211462071 -16062507 + L1MA4 LINE L1 5891 6041 -256 271 167 0 0 chr3 211462064 211462118 -16062460 + L1MB2 LINE L1 6079 6132 -39 * 692 185 216 19 chr3 211462142 211462401 -16062177 + L1MC4 LINE L1 7720 8029 -13 2089 135 23 0 chr3 211462897 211463201 -16061377 + AluSx SINE Alu 1 311 -1 203 256 67 44 chr3 211463313 211463403 -16061175 + MIR SINE MIR 163 254 -8 257 121 60 48 chr3 211464077 211464160 -16060418 + (TTAA)n Simple_repeat Simple_repeat 4 87 0 32 0 0 0 chr3 211464184 211464216 -16060362 + AT_rich Low_complexity Low_complexity 1 32 0 1135 152 5 11 chr3 211464216 211464407 -16060171 - L1PA16 LINE L1 -9 6157 5968 565 232 7 7 chr3 211464484 211464626 -16059952 + L1ME1 LINE L1 4763 4904 -1242 1122 183 22 75 chr3 211465262 211465585 -16058993 + L1ME1 LINE L1 4890 5194 -952 2264 108 3 3 chr3 211465585 211465890 -16058688 + AluSx SINE Alu 1 305 -7 1122 183 22 75 chr3 211465890 211465926 -16058652 + L1ME1 LINE L1 5194 5230 -916 1581 249 54 67 chr3 211465926 211466045 -16058533 + MLT1E2 LTR MaLR 1 120 -506 1853 155 7 7 chr3 211466045 211466342 -16058236 + AluJb SINE Alu 1 297 -15 1581 249 54 67 chr3 211466342 211466848 -16057730 + MLT1E2 LTR MaLR 120 618 -8 791 226 8 6 chr3 211466852 211467060 -16057518 + L1ME1 LINE L1 5226 5433 -733 1274 211 81 49 chr3 211467082 211467537 -16057041 + MLT1E LTR MaLR 128 588 -2 2409 224 19 15 chr3 211467537 211468153 -16056425 + L1ME1 LINE L1 5462 6080 -86 463 333 50 25 chr3 211468174 211468453 -16056125 + L1M4 LINE L1 4394 4679 -1467 202 234 47 47 chr3 211469260 211469324 -16055254 + MER5B DNA MER1_type 3 66 -112 331 293 7 68 chr3 211469330 211469405 -16055173 + MER5B DNA MER1_type 24 87 -91 2046 87 49 14 chr3 211469405 211469691 -16054887 + AluSg SINE Alu 2 297 -13 331 293 7 68 chr3 211469691 211469762 -16054816 + MER5B DNA MER1_type 87 161 -17 185 179 0 36 chr3 211469850 211469906 -16054672 + A-rich Low_complexity Low_complexity 1 54 0 453 193 0 0 chr3 211471715 211471813 -16052765 - L1MB7 LINE L1 0 6174 6076 2387 107 0 0 chr3 211471877 211472186 -16052392 + AluSx SINE Alu 1 309 -3 954 180 11 26 chr3 211472273 211472462 -16052116 + MER5A DNA MER1_type 1 186 -3 2303 120 0 0 chr3 211472637 211472946 -16051632 + AluSq SINE Alu 1 309 -4 236 298 202 9 chr3 211473357 211473471 -16051107 - MIR3 SINE MIR -43 165 30 581 302 32 20 chr3 211473706 211474050 -16050528 - L1ME4a LINE L1 -219 5902 5555 26 0 0 0 chr3 211474151 211474177 -16050401 + AT_rich Low_complexity Low_complexity 1 26 0 1588 219 63 19 chr3 211474183 211474705 -16049873 + L1ME1 LINE L1 5594 6159 -7 1984 153 36 28 chr3 211476111 211476304 -16048274 + MSTB LTR MaLR 1 191 -235 2288 96 0 3 chr3 211476304 211476606 -16047972 + AluSg SINE Alu 1 301 -9 1984 153 36 28 chr3 211476606 211476799 -16047779 + MSTB LTR MaLR 191 390 -36 2581 36 0 3 chr3 211476800 211477104 -16047474 - AluY SINE Alu -8 303 1 186 43 0 0 chr3 211477288 211477311 -16047267 + (CAA)n Simple_repeat Simple_repeat 2 24 0 334 293 85 14 chr3 211477429 211477593 -16046985 + MIR3 SINE MIR 15 192 -68 2315 109 3 0 chr3 211477780 211478092 -16046486 + AluSq SINE Alu 1 313 0 2082 134 39 0 chr3 211479309 211479644 -16044934 + MER7A DNA MER2_type 1 346 0 427 326 106 13 chr3 211479688 211479924 -16044654 - L3b LINE CR1 -209 1374 1117 2225 114 7 3 chr3 211480607 211480913 -16043665 - AluSx SINE Alu -5 307 1 2065 130 75 100 chr3 211480986 211481137 -16043441 - Charlie1b DNA MER1_type -2239 522 369 1977 135 10 19 chr3 211481137 211481449 -16043129 + AluSx SINE Alu 1 309 -3 2065 130 75 100 chr3 211481449 211481828 -16042750 - Charlie1b DNA MER1_type -2392 369 5 377 310 99 58 chr3 211482073 211482489 -16042089 - HAL1 LINE L1 -1170 1337 905 2324 108 0 6 chr3 211483257 211483571 -16041007 + AluSx SINE Alu 1 312 0 1787 174 155 0 chr3 211483627 211484046 -16040532 - MLT1D LTR MaLR 0 505 22 213 271 224 0 chr3 211484071 211484178 -16040400 - MIR SINE MIR -29 233 103 2810 245 56 18 chr3 211484179 211485061 -16039517 + L2 LINE L2 2255 3169 -144 1444 245 105 9 chr3 211485100 211485406 -16039172 + MLT1F LTR MaLR 1 361 -181 2419 109 0 0 chr3 211485406 211485719 -16038859 + AluSq SINE Alu 1 313 0 1444 245 105 9 chr3 211485719 211485841 -16038737 + MLT1F LTR MaLR 361 470 -72 427 284 57 21 chr3 211485949 211486090 -16038488 + L2 LINE L2 3168 3313 0 302 309 24 0 chr3 211486093 211486177 -16038401 - MIR SINE MIR -157 105 20 2193 103 3 0 chr3 211486290 211486581 -16037997 + AluSp SINE Alu 1 292 -21 2333 92 0 0 chr3 211486583 211486876 -16037702 + AluSp SINE Alu 1 293 -20 492 315 50 17 chr3 211486894 211487075 -16037503 - MIR SINE MIR 0 262 76 989 73 0 0 chr3 211487173 211487297 -16037281 + AluSc SINE Alu 180 303 -6 198 0 0 0 chr3 211487297 211487319 -16037259 + (TA)n Simple_repeat Simple_repeat 2 23 0 258 32 0 0 chr3 211487320 211487351 -16037227 + (GA)n Simple_repeat Simple_repeat 1 31 0 2342 92 3 3 chr3 211487435 211487740 -16036838 + AluSp SINE Alu 1 305 -8 1981 110 36 4 chr3 211487854 211488135 -16036443 - AluSx SINE Alu -22 290 1 312 334 59 47 chr3 211488273 211488424 -16036154 - MIR SINE MIR -62 146 30 3620 135 25 12 chr3 211488903 211489655 -16034923 + L1MB8 LINE L1 5187 5947 -231 506 119 36 0 chr3 211489652 211489736 -16034842 + L1MB8 LINE L1 5861 5947 -231 * 459 143 36 0 chr3 211489733 211489817 -16034761 + L1MB8 LINE L1 5861 5947 -231 * 459 143 36 0 chr3 211489814 211489898 -16034680 + L1MB8 LINE L1 5861 5947 -231 * 478 131 36 0 chr3 211489895 211489979 -16034599 + L1MB8 LINE L1 5861 5947 -231 459 143 36 0 chr3 211489976 211490060 -16034518 + L1MB8 LINE L1 5861 5947 -231 * 459 143 36 0 chr3 211490057 211490141 -16034437 + L1MB8 LINE L1 5861 5947 -231 459 143 36 0 chr3 211490138 211490222 -16034356 + L1MB8 LINE L1 5861 5947 -231 459 143 36 0 chr3 211490219 211490303 -16034275 + L1MB8 LINE L1 5861 5947 -231 459 143 36 0 chr3 211490300 211490384 -16034194 + L1MB8 LINE L1 5861 5947 -231 459 143 36 0 chr3 211490381 211490465 -16034113 + L1MB8 LINE L1 5861 5947 -231 459 143 36 0 chr3 211490462 211490546 -16034032 + L1MB8 LINE L1 5861 5947 -231 459 143 36 0 chr3 211490543 211490627 -16033951 + L1MB8 LINE L1 5861 5947 -231 * 1661 151 28 8 chr3 211490624 211490708 -16033870 + L1MB8 LINE L1 5860 5941 -237 1661 150 26 7 chr3 211490708 211491011 -16033567 + L1MB8 LINE L1 5861 6172 -6 1661 151 28 8 chr3 211491011 211491035 -16033543 + L1MB8 LINE L1 5941 6172 -6 344 146 1 90 chr3 211491416 211491488 -16033090 + L1ME4a LINE L1 5748 5813 -308 2415 84 3 0 chr3 211491488 211491787 -16032791 - AluSp SINE Alu -13 300 1 344 146 1 90 chr3 211491787 211491814 -16032764 + L1ME4a LINE L1 5813 5841 -280 1286 213 67 18 chr3 211491829 211492619 -16031959 + L1M4c LINE L1 1532 2458 -3924 2328 103 0 0 chr3 211492681 211492983 -16031595 - AluSc SINE Alu -7 302 1 340 204 102 14 chr3 211493040 211493187 -16031391 + L1ME4a LINE L1 5959 6118 -3 2269 100 10 0 chr3 211493940 211494239 -16030339 + AluSx SINE Alu 1 302 -10 29 47 0 0 chr3 211494582 211494625 -16029953 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr3 211494795 211494817 -16029761 + AT_rich Low_complexity Low_complexity 1 22 0 275 219 132 0 chr3 211495081 211495195 -16029383 - L1ME4a LINE L1 -3 6118 5990 1369 82 0 26 chr3 211495222 211495416 -16029162 + MER1B DNA MER1_type 87 275 -64 467 108 0 36 chr3 211495425 211495508 -16029070 + MER1B DNA MER1_type 254 333 0 339 282 0 19 chr3 211495509 211495612 -16028966 - L1ME4a LINE L1 -201 5920 5820 24 0 0 0 chr3 211495625 211495649 -16028929 + AT_rich Low_complexity Low_complexity 1 24 0 697 314 63 0 chr3 211495880 211496119 -16028459 - MIR SINE MIR -6 256 3 1114 297 62 7 chr3 211496193 211496776 -16027802 - L1M4 LINE L1 -1779 5070 4456 9476 163 32 47 chr3 211496801 211499777 -16024801 - L1PB4 LINE L1 -5 6867 3894 6150 90 25 12 chr3 211499849 211501074 -16023504 - L1PB1 LINE L1 -2 6149 4916 2231 181 30 4 chr3 211501093 211501623 -16022955 + L1PB1 LINE L1 4364 4907 -1239 2510 239 86 5 chr3 211501627 211502429 -16022149 - L1PB4 LINE L1 -5991 872 6 2868 218 118 20 chr3 211502448 211503451 -16021127 - L1PA15-16 LINE L1 -2970 3879 2779 422 257 9 0 chr3 211503459 211503572 -16021006 - L1 LINE L1 -2411 3735 3622 927 211 88 9 chr3 211503595 211503958 -16020620 + MLT1C LTR MaLR 53 465 -2 434 292 41 5 chr3 211503960 211504155 -16020423 - L1 LINE L1 -2520 3626 3425 1372 246 94 9 chr3 211505634 211506269 -16018309 - L1 LINE L1 -2828 3318 2630 192 289 12 60 chr3 211506451 211506534 -16018044 + MIR SINE MIR 69 147 -115 36 23 0 0 chr3 211506567 211506610 -16017968 + AT_rich Low_complexity Low_complexity 1 43 0 580 264 36 12 chr3 211506997 211507164 -16017414 - MIR SINE MIR -10 252 82 1611 174 77 21 chr3 211508160 211508176 -16016402 + THE1C LTR MaLR 1 15 -360 2489 58 0 0 chr3 211508176 211508467 -16016111 - AluY SINE Alu -20 291 1 1611 174 77 21 chr3 211508467 211508819 -16015759 + THE1C LTR MaLR 15 375 0 1373 243 84 30 chr3 211508822 211509225 -16015353 + MLT1J LTR MaLR 83 507 -4 203 211 70 0 chr3 211509295 211509352 -16015226 - L2 LINE L2 -1079 2235 2175 525 259 22 58 chr3 211510286 211510510 -16014068 - MER112 DNA MER1_type -44 216 1 279 0 0 0 chr3 211510648 211510679 -16013899 + (TG)n Simple_repeat Simple_repeat 2 32 0 201 306 0 0 chr3 211510745 211510794 -16013784 + GA-rich Low_complexity Low_complexity 4 52 0 188 217 150 0 chr3 211511022 211511082 -16013496 - MIR SINE MIR -68 194 126 2429 56 6 41 chr3 211511160 211511480 -16013098 + AluSc SINE Alu 1 309 0 22 0 0 0 chr3 211512273 211512295 -16012283 + AT_rich Low_complexity Low_complexity 1 22 0 1621 22 11 0 chr3 211512441 211512620 -16011958 + L1PA4 LINE L1 5975 6155 0 218 143 0 0 chr3 211512727 211512761 -16011817 + MIR SINE MIR 114 146 -116 315 122 0 0 chr3 211512801 211512850 -16011728 + (A)n Simple_repeat Simple_repeat 1 49 0 4343 126 46 28 chr3 211513559 211514272 -16010306 + LTR8A LTR ERV1 1 726 -1 2274 125 13 55 chr3 211514325 211514709 -16009869 - MER51B LTR ERV1 -9 368 1 2503 59 3 7 chr3 211514714 211515021 -16009557 - AluY SINE Alu -5 306 1 1785 83 21 0 chr3 211515069 211515310 -16009268 - MER51A LTR ERV1 0 634 389 2214 115 7 0 chr3 211515316 211515620 -16008958 + AluSg SINE Alu 1 306 -4 2647 92 58 12 chr3 211515628 211516343 -16008235 - MER57-int LTR ERV1 -1808 5729 4656 15970 121 53 23 chr3 211516362 211517406 -16007172 - MER57-int LTR ERV1 -4538 3278 2267 3837 44 50 0 chr3 211517406 211517861 -16006717 - L1PA6 LINE L1 0 6154 5677 * 7593 47 13 0 chr3 211517858 211519320 -16005258 - L1PA6 LINE L1 -1 6153 4681 15970 121 53 23 chr3 211517861 211519665 -16004913 - MER57-int LTR ERV1 -5549 2267 520 1867 141 33 10 chr3 211519665 211519964 -16004614 - AluSx SINE Alu -6 306 1 15970 121 53 23 chr3 211519964 211520532 -16004046 - MER57-int LTR ERV1 -7296 520 -29 189 0 0 0 chr3 211520532 211520553 -16004025 + (CA)n Simple_repeat Simple_repeat 2 22 0 15970 121 53 23 chr3 211520553 211521282 -16003296 - MER57-int LTR ERV1 -7845 4294967267 503 2359 103 0 0 chr3 211521282 211521582 -16002996 + AluSg SINE Alu 1 300 -10 15970 121 53 23 chr3 211521582 211521639 -16002939 - MER57-int LTR ERV1 -7312 504 450 302 154 31 0 chr3 211521637 211521702 -16002876 + MER4D-int LTR ERV1 3316 3382 -3216 * 1110 134 17 6 chr3 211521774 211521953 -16002625 - AluSg/x SINE Alu 0 312 132 34 0 0 0 chr3 211521953 211521987 -16002591 + AT_rich Low_complexity Low_complexity 1 34 0 2156 123 10 0 chr3 211521987 211522288 -16002290 - AluSq SINE Alu -9 304 1 2390 91 3 0 chr3 211522292 211522590 -16001988 - AluSp SINE Alu -14 299 1 1045 157 53 79 chr3 211522593 211522881 -16001697 + MER4D-int LTR ERV1 2426 3728 -2870 2486 81 0 0 chr3 211522882 211523189 -16001389 - AluY SINE Alu -1 310 4 1022 138 76 24 chr3 211523240 211523450 -16001128 + MER4D-int LTR ERV1 3732 3952 -2646 1606 87 10 5 chr3 211523467 211523675 -16000903 + AluSp SINE Alu 1 209 -104 5642 104 11 14 chr3 211523675 211524457 -16000121 + LTR17 LTR ERV1 1 780 0 673 121 0 0 chr3 211524457 211524548 -16000030 + AluSp SINE Alu 206 296 -17 540 155 45 84 chr3 211524600 211524755 -15999823 + MER4D-int LTR ERV1 4578 4726 -1872 690 144 32 138 chr3 211524942 211525098 -15999480 + MER4D-int LTR ERV1 3787 3921 -4199 2438 78 0 13 chr3 211525098 211525406 -15999172 - AluSx SINE Alu -8 304 1 690 144 32 138 chr3 211525406 211525437 -15999141 + MER4D-int LTR ERV1 3921 3954 -4166 528 183 115 35 chr3 211525641 211525806 -15998772 + MER4D-int LTR ERV1 3951 6164 -594 * 1602 205 95 0 chr3 211525776 211526122 -15998456 + MER4D-int LTR ERV1 6377 6755 -3 1118 173 42 48 chr3 211526125 211526413 -15998165 + MER4D LTR ERV1 1 290 -633 601 142 38 19 chr3 211526398 211526504 -15998074 + MER49 LTR ERV1 616 723 -200 * 1225 200 0 18 chr3 211526507 211526732 -15997846 + MER41D-int LTR ERV1 4608 4828 -1848 2124 176 11 3 chr3 211527082 211527448 -15997130 + MER41D-int LTR ERV1 5833 5937 -9 975 192 0 0 chr3 211527452 211527619 -15996959 + MER41D LTR ERV1 1 167 -390 2013 161 69 80 chr3 211527644 211528085 -15996493 + MER41B LTR ERV1 101 382 -96 2156 116 0 3 chr3 211528085 211528386 -15996192 - AluSx SINE Alu -12 300 1 2013 161 69 80 chr3 211528386 211528473 -15996105 + MER41B LTR ERV1 382 468 -10 3784 23 2 0 chr3 211578551 211578983 -15945595 - HERVK LTR ERVK -6810 433 1 8101 50 1 0 chr3 211578986 211579951 -15944627 - LTR5 LTR ERVK -3 966 1 280 252 74 52 chr3 211580845 211580980 -15943598 + HERVK22 LTR ERVK 4913 5050 -2702 2048 108 24 0 chr3 211581059 211581354 -15943224 + AluSq SINE Alu 1 302 -11 343 204 78 29 chr3 211581459 211581562 -15943016 + HERVK22 LTR ERVK 4516 4623 -2214 477 359 22 22 chr3 211582870 211583241 -15941337 + HERVK22 LTR ERVK 6152 6522 -315 1882 118 18 0 chr3 211583956 211584228 -15940350 + AluSq SINE Alu 31 307 -6 269 304 47 40 chr3 211584315 211584463 -15940115 - L2 LINE L2 -208 3064 2916 222 244 24 0 chr3 211584610 211584692 -15939886 + (TATAA)n Simple_repeat Simple_repeat 1 84 0 1962 119 0 3 chr3 211584764 211585079 -15939499 + AluSx SINE Alu 1 314 0 2319 51 6 16 chr3 211585081 211585395 -15939183 + AluY SINE Alu 1 311 0 2168 116 0 3 chr3 211585431 211585733 -15938845 + AluSx SINE Alu 1 301 -11 2299 78 10 0 chr3 211585737 211586046 -15938532 + AluSp SINE Alu 1 312 -1 2088 102 3 0 chr3 211586264 211586582 -15937996 - AluSp SINE Alu 0 319 1 2041 93 0 51 chr3 211586582 211586895 -15937683 - AluSx SINE Alu -15 297 1 753 186 0 0 chr3 211586907 211587025 -15937553 - FLAM_C SINE Alu -24 119 2 1964 138 0 19 chr3 211587091 211587264 -15937314 - AluSx SINE Alu -6 306 140 1897 121 7 20 chr3 211587264 211587570 -15937008 - AluSx SINE Alu -10 302 1 1964 138 0 19 chr3 211587570 211587708 -15936870 - AluSx SINE Alu -172 140 1 2172 101 0 0 chr3 211587712 211588000 -15936578 - AluSx SINE Alu -20 292 5 1602 161 0 39 chr3 211588495 211588806 -15935772 + AluJb SINE Alu 1 299 -13 2056 113 0 0 chr3 211589126 211589409 -15935169 + AluSx SINE Alu 11 293 -19 2257 94 0 7 chr3 211589601 211589909 -15934669 - AluSg SINE Alu 0 310 5 2005 119 6 10 chr3 211589922 211590233 -15934345 - AluSg SINE Alu 0 310 1 1187 72 0 0 chr3 211590255 211590407 -15934171 + AluSg/x SINE Alu 157 308 -4 1441 155 88 34 chr3 211591349 211591645 -15932933 - AluJo SINE Alu 0 312 1 2150 63 30 0 chr3 211591716 211592011 -15932567 - AluSc SINE Alu 0 304 2 290 156 138 83 chr3 211592614 211592723 -15931855 + LTR66 LTR ERVL 325 439 -171 309 51 0 0 chr3 211592723 211592762 -15931816 + (CA)n Simple_repeat Simple_repeat 2 40 0 1123 120 0 6 chr3 211592766 211592941 -15931637 - AluSg/x SINE Alu -7 305 132 351 0 0 0 chr3 211592941 211592980 -15931598 + (TG)n Simple_repeat Simple_repeat 2 40 0 1880 123 0 53 chr3 211592983 211593285 -15931293 - AluSp SINE Alu -27 286 1 360 0 0 0 chr3 211593657 211593697 -15930881 + (TG)n Simple_repeat Simple_repeat 1 40 0 300 241 0 0 chr3 211593697 211593751 -15930827 + L1MC4 LINE L1 6649 6702 -1340 231 36 0 0 chr3 211593751 211593779 -15930799 + (CA)n Simple_repeat Simple_repeat 1 28 0 2081 108 0 29 chr3 211593783 211594097 -15930481 - AluSx SINE Alu -7 305 1 1922 129 0 0 chr3 211594342 211594620 -15929958 - AluJb SINE Alu -34 278 1 467 282 96 45 chr3 211594907 211595127 -15929451 + MIR SINE MIR 18 248 -14 204 267 0 0 chr3 211595559 211595604 -15928974 + (CGG)n Simple_repeat Simple_repeat 2 46 0 2155 128 0 0 chr3 211596364 211596676 -15927902 - AluSx SINE Alu 0 312 1 2174 47 0 84 chr3 211596814 211596976 -15927602 - AluY SINE Alu -16 295 121 2110 98 0 20 chr3 211596976 211597282 -15927296 - AluSg SINE Alu -10 300 1 2174 47 0 84 chr3 211597282 211597294 -15927284 - AluY SINE Alu -190 121 110 2348 41 41 0 chr3 211597294 211597588 -15926990 - AluY SINE Alu -5 306 1 2174 47 0 84 chr3 211597588 211597734 -15926844 - AluY SINE Alu -201 110 1 1433 172 29 29 chr3 211598899 211599207 -15925371 - AluJo SINE Alu 0 312 5 27 29 0 0 chr3 211599419 211599453 -15925125 + AT_rich Low_complexity Low_complexity 1 34 0 2011 101 30 3 chr3 211599516 211599812 -15924766 + AluSx SINE Alu 1 304 -8 1773 121 24 24 chr3 211599828 211600126 -15924452 + AluSx SINE Alu 1 298 -14 2011 91 0 0 chr3 211600265 211600528 -15924050 - AluSq SINE Alu -50 263 1 1340 215 108 42 chr3 211600649 211601073 -15923505 + LTR16B LTR ERVL 1 452 -12 2333 93 0 0 chr3 211601293 211601603 -15922975 + AluSx SINE Alu 1 310 -2 308 280 0 42 chr3 211601863 211601981 -15922597 - HAL1b LINE L1 -442 906 794 1839 141 6 13 chr3 211602248 211602561 -15922017 - AluJo SINE Alu -1 311 1 198 0 0 0 chr3 211602593 211602615 -15921963 + (TTTA)n Simple_repeat Simple_repeat 3 24 0 2250 95 0 0 chr3 211602619 211602914 -15921664 - AluSx SINE Alu -17 295 1 21 0 0 0 chr3 211602994 211603015 -15921563 + AT_rich Low_complexity Low_complexity 1 21 0 817 136 0 57 chr3 211603271 211603411 -15921167 - FLAM_C SINE Alu -1 132 1 594 215 221 60 chr3 211603454 211603716 -15920862 - MER113 DNA MER1_type? 0 521 302 2244 100 3 0 chr3 211603716 211604025 -15920553 - AluSq SINE Alu -3 310 1 594 215 221 60 chr3 211604025 211604143 -15920435 - MER113 DNA MER1_type? -219 302 80 685 181 8 16 chr3 211604405 211604532 -15920046 + MER3 DNA MER1_type 83 208 -1 2043 87 4 0 chr3 211604618 211604883 -15919695 - AluSx SINE Alu -13 299 34 1065 80 7 0 chr3 211604884 211605021 -15919557 - AluSq/x SINE Alu -175 138 1 1123 141 0 0 chr3 211605795 211605965 -15918613 - AluSg/x SINE Alu -9 301 132 1977 128 7 0 chr3 211605965 211606261 -15918317 - AluSx SINE Alu -14 298 1 1936 138 3 7 chr3 211606335 211606633 -15917945 + AluJb SINE Alu 1 297 -15 2002 123 0 0 chr3 211606837 211607148 -15917430 - AluSg SINE Alu 0 312 2 1891 112 0 14 chr3 211607356 211607643 -15916935 - AluSx SINE Alu -18 294 12 2193 92 3 3 chr3 211607656 211607951 -15916627 - AluSp SINE Alu -18 295 1 1744 152 27 14 chr3 211608006 211608302 -15916276 - AluJb SINE Alu -11 301 2 306 325 58 25 chr3 211609411 211609531 -15915047 - L2 LINE L2 -15 3257 3134 2318 70 43 0 chr3 211609915 211610214 -15914364 - AluSp SINE Alu -1 312 1 443 137 0 14 chr3 211610442 211610515 -15914063 - MER46C DNA MER2_type -1 337 266 2339 99 3 3 chr3 211611149 211611461 -15913117 - AluSq SINE Alu -1 312 1 307 244 0 37 chr3 211611550 211611632 -15912946 - L1ME3A LINE L1 -17 6153 6075 672 259 140 45 chr3 211611654 211611756 -15912822 - HAL1 LINE L1 -1240 1267 1176 2105 134 10 0 chr3 211611756 211612054 -15912524 - AluSx SINE Alu -11 301 1 672 259 140 45 chr3 211612054 211612372 -15912206 - HAL1 LINE L1 -1331 1176 807 * 830 216 94 32 chr3 211612364 211612751 -15911827 + L1MC4 LINE L1 6789 7245 -797 1574 121 5 9 chr3 211612751 211612974 -15911604 + AluSg/x SINE Alu 86 307 -5 830 216 94 32 chr3 211612974 211613002 -15911576 + L1MC4 LINE L1 7245 7270 -772 24 0 0 0 chr3 211613285 211613309 -15911269 + GC_rich Low_complexity Low_complexity 1 24 0 1003 184 4 119 chr3 211613346 211613564 -15911014 - MER82 DNA MER2_type -68 585 400 2425 82 7 3 chr3 211613564 211613870 -15910708 - AluSq SINE Alu -6 307 1 1003 184 4 119 chr3 211613870 211613912 -15910666 - MER82 DNA MER2_type -253 400 355 1645 141 0 0 chr3 211613916 211614171 -15910407 + L1PB4 LINE L1 5688 5942 -214 2191 105 0 3 chr3 211614179 211614491 -15910087 + AluSx SINE Alu 1 311 0 2083 176 14 3 chr3 211614491 211614838 -15909740 - MER82 DNA MER2_type -295 358 8 676 152 10 0 chr3 211614865 211614964 -15909614 + FLAM_C SINE Alu 14 113 -30 392 278 160 46 chr3 211614979 211615100 -15909478 - HAL1b LINE L1 -581 767 661 2140 123 0 10 chr3 211615100 211615402 -15909176 - AluSx SINE Alu -12 300 2 392 278 160 46 chr3 211615402 211615590 -15908988 - HAL1b LINE L1 -687 661 402 2061 127 0 3 chr3 211615590 211615906 -15908672 - AluSq SINE Alu 0 317 3 392 278 160 46 chr3 211615906 211615982 -15908596 - HAL1b LINE L1 -946 402 336 336 286 101 0 chr3 211615985 211616104 -15908474 + L2 LINE L2 3183 3313 0 294 146 5 15 chr3 211616132 211616191 -15908387 - Alu SINE Alu -258 42 1 649 226 80 0 chr3 211616693 211616830 -15907748 + MER58B DNA MER1_type 191 338 -3 619 138 106 24 chr3 211616857 211616980 -15907598 + FLAM_C SINE Alu 1 133 0 472 275 30 23 chr3 211616996 211617127 -15907451 + MIR SINE MIR 20 151 -111 2299 95 3 0 chr3 211617127 211617421 -15907157 + AluSq SINE Alu 1 295 -18 984 211 189 37 chr3 211617422 211617802 -15906776 - L1MC4 LINE L1 -225 7817 7380 307 294 147 7 chr3 211617884 211618020 -15906558 - L2 LINE L2 -7 3265 3111 575 183 0 0 chr3 211619019 211619123 -15905455 - AluSp/q SINE Alu -12 301 198 2411 102 0 3 chr3 211619355 211619668 -15904910 - AluSq SINE Alu -1 312 1 916 129 0 0 chr3 211619732 211619864 -15904714 - FLAM_C SINE Alu -1 132 1 202 261 126 72 chr3 211620103 211620214 -15904364 - L2 LINE L2 0 3313 3197 355 319 229 2 chr3 211620504 211620914 -15903664 - L2 LINE L2 -935 2379 1877 240 212 30 15 chr3 211621150 211621216 -15903362 - Charlie8 DNA MER1_type -2322 95 29 29 78 0 0 chr3 211621678 211621742 -15902836 + AT_rich Low_complexity Low_complexity 1 64 0 1157 174 14 27 chr3 211622288 211622507 -15902071 + AluJb SINE Alu 86 301 -11 2614 68 0 0 chr3 211622586 211622897 -15901681 + AluY SINE Alu 1 311 0 221 284 0 15 chr3 211622898 211622965 -15901613 - MIR SINE MIR -150 112 47 232 211 11 111 chr3 211622979 211623069 -15901509 - MER5A DNA MER1_type -71 118 38 1500 176 40 7 chr3 211623284 211623579 -15900999 - AluJb SINE Alu 0 305 2 2429 53 30 0 chr3 211623591 211623893 -15900685 - AluY SINE Alu 0 311 1 2070 124 23 3 chr3 211624068 211624374 -15900204 - AluSx SINE Alu 0 312 1 993 189 0 11 chr3 211625848 211626028 -15898550 + FRAM SINE Alu 1 175 -1 666 163 0 31 chr3 211626117 211626246 -15898332 - FLAM_C SINE Alu -8 135 11 1911 131 6 42 chr3 211626275 211626588 -15897990 - AluJb SINE Alu -7 305 4 454 284 0 9 chr3 211626599 211626715 -15897863 - MIR SINE MIR -92 170 56 437 227 21 0 chr3 211626816 211626913 -15897665 - MER94 DNA DNA -14 120 22 654 173 0 0 chr3 211626966 211627070 -15897508 - FRAM SINE Alu -8 168 65 2246 90 0 56 chr3 211627160 211627483 -15897095 - AluSc SINE Alu -4 305 1 254 308 71 45 chr3 211627780 211627913 -15896665 + MIR SINE MIR 72 206 -56 668 12 12 0 chr3 211628006 211628087 -15896491 + (TTTC)n Simple_repeat Simple_repeat 4 85 0 2101 93 39 7 chr3 211628122 211628446 -15896132 - AluSc SINE Alu 0 335 3 3438 74 2 0 chr3 211628947 211629365 -15895213 - LTR5 LTR ERVK -91 878 460 475 91 0 0 chr3 211629369 211629435 -15895143 + AluJ/FRAM SINE Alu 229 294 -18 2335 95 7 0 chr3 211630023 211630319 -15894259 + AluSx SINE Alu 1 298 -14 812 243 62 9 chr3 211630979 211631189 -15893389 + MER58A DNA MER1_type 4 224 0 2072 137 13 3 chr3 211631521 211631821 -15892757 + AluJb SINE Alu 1 303 -9 2395 88 0 0 chr3 211633322 211633617 -15890961 - AluSq SINE Alu -18 295 1 2207 112 3 7 chr3 211633833 211634138 -15890440 - AluSx SINE Alu -8 304 1 2398 77 0 3 chr3 211634158 211634455 -15890123 - AluY SINE Alu -15 296 1 2383 98 0 3 chr3 211634669 211634976 -15889602 + AluSq SINE Alu 1 306 -7 1788 163 10 13 chr3 211634985 211635285 -15889293 + AluJb SINE Alu 1 299 -13 25 0 0 0 chr3 211635365 211635390 -15889188 + AT_rich Low_complexity Low_complexity 1 25 0 633 282 138 15 chr3 211635455 211635920 -15888658 + L1ME4a LINE L1 5598 6119 -2 586 150 17 8 chr3 211635989 211636109 -15888469 + CT-rich Low_complexity Low_complexity 1 121 0 372 214 0 40 chr3 211636129 211636255 -15888323 + CT-rich Low_complexity Low_complexity 3 123 0 408 113 0 0 chr3 211636255 211636308 -15888270 - AluJ/FLAM SINE Alu -248 64 12 379 102 17 0 chr3 211636308 211636367 -15888211 + LTR32 LTR ERVL 29 88 -383 1331 175 12 25 chr3 211636382 211636622 -15887956 + LTR32 LTR ERVL 233 469 -2 1113 99 0 0 chr3 211637374 211637535 -15887043 + AluY SINE Alu 137 297 -14 298 318 51 3 chr3 211637570 211637712 -15886866 + MIR SINE MIR 21 166 -64 22 0 0 0 chr3 211637811 211637833 -15886745 + AT_rich Low_complexity Low_complexity 1 22 0 763 159 15 38 chr3 211637935 211638067 -15886511 + FLAM_C SINE Alu 6 134 -9 32 75 0 0 chr3 211638815 211638882 -15885696 + GC_rich Low_complexity Low_complexity 1 67 0 344 188 11 61 chr3 211638912 211639093 -15885485 + (CCCG)n Simple_repeat Simple_repeat 4 175 0 265 137 42 11 chr3 211639101 211639196 -15885382 + (CCCCG)n Simple_repeat Simple_repeat 2 99 0 720 201 26 7 chr3 211639256 211639410 -15885168 - L1MC4 LINE L1 -1117 6925 6769 2180 99 7 0 chr3 211639532 211639815 -15884763 + AluSx SINE Alu 6 290 -22 378 252 94 16 chr3 211640403 211640530 -15884048 - MER5A DNA MER1_type 0 189 53 820 116 62 20 chr3 211640548 211640694 -15883884 + FAM SINE Alu 13 164 -21 191 147 29 0 chr3 211640745 211640779 -15883799 - MER5A DNA MER1_type -108 81 47 2356 84 3 0 chr3 211641245 211641542 -15883036 - AluSg1 SINE Alu -10 299 2 2190 106 3 7 chr3 211641611 211641949 -15882629 - AluSx SINE Alu 0 337 1 2400 80 0 10 chr3 211641958 211642270 -15882308 - AluSc SINE Alu 0 309 1 2337 87 0 34 chr3 211642540 211642863 -15881715 - AluSq SINE Alu -1 312 1 849 67 19 0 chr3 211643239 211643344 -15881234 - AluSg/x SINE Alu -13 297 191 1694 169 6 25 chr3 211643562 211643876 -15880702 - AluJb SINE Alu -2 310 3 694 189 8 23 chr3 211643883 211644015 -15880563 - FLAM_A SINE Alu -3 130 1 1299 118 0 6 chr3 211644022 211644200 -15880378 - AluSg/x SINE Alu -10 302 126 2227 112 0 31 chr3 211644200 211644521 -15880057 - AluSx SINE Alu -1 311 1 472 275 30 23 chr3 211644521 211644652 -15879926 - MIR SINE MIR -111 151 20 593 146 106 24 chr3 211644668 211644791 -15879787 - FLAM_C SINE Alu 0 133 1 649 226 80 0 chr3 211644818 211644955 -15879623 - MER58B DNA MER1_type -3 338 191 294 146 5 15 chr3 211645457 211645516 -15879062 + Alu SINE Alu 1 42 -260 336 286 101 0 chr3 211645544 211645663 -15878915 - L2 LINE L2 0 3313 3183 429 271 163 47 chr3 211645666 211645742 -15878836 + HAL1b LINE L1 336 402 -946 2048 130 0 3 chr3 211645742 211646058 -15878520 + AluSq SINE Alu 3 317 0 429 271 163 47 chr3 211646058 211646245 -15878333 + HAL1b LINE L1 402 566 -782 2148 122 0 10 chr3 211646245 211646548 -15878030 + AluSx SINE Alu 2 301 -11 429 271 163 47 chr3 211646548 211646669 -15877909 + HAL1b LINE L1 566 767 -581 676 152 10 0 chr3 211646684 211646783 -15877795 - FLAM_C SINE Alu -30 113 14 1845 180 16 0 chr3 211646810 211647121 -15877457 + MER82 DNA MER2_type 8 323 -330 1759 144 7 10 chr3 211647240 211647531 -15877047 + AluSx SINE Alu 22 311 -1 565 250 7 0 chr3 211647569 211647705 -15876873 + FLAM_A SINE Alu 5 141 -1 425 254 121 62 chr3 211647709 211647865 -15876713 - L1MD2 LINE L1 -137 6222 6048 2149 110 3 0 chr3 211647865 211648147 -15876431 - AluSq SINE Alu -17 296 14 425 254 121 62 chr3 211648147 211648214 -15876364 - L1MD2 LINE L1 -311 6048 5986 1821 171 7 3 chr3 211648396 211648700 -15875878 + AluJo SINE Alu 1 305 -7 2085 128 0 3 chr3 211649034 211649339 -15875239 - AluSx SINE Alu -8 304 1 470 229 29 133 chr3 211649558 211649722 -15874856 - MIR SINE MIR -1 261 82 1758 162 54 7 chr3 211649722 211650019 -15874559 + AluJo SINE Alu 1 311 -1 2582 39 10 3 chr3 211650025 211650334 -15874244 + AluY SINE Alu 1 311 0 470 229 29 133 chr3 211650334 211650402 -15874176 - MIR SINE MIR -185 77 47 232 211 11 111 chr3 211650416 211650506 -15874072 - MER5A DNA MER1_type -71 118 38 1309 199 44 11 chr3 211650721 211651016 -15873562 - AluJb SINE Alu 0 305 2 2429 53 30 0 chr3 211651028 211651330 -15873248 - AluY SINE Alu 0 311 1 2070 124 23 3 chr3 211651505 211651811 -15872767 - AluSx SINE Alu 0 312 1 321 319 34 50 chr3 211653159 211653397 -15871181 + L1ME LINE L1 5538 5771 -350 1331 175 12 25 chr3 211654309 211654549 -15870029 - LTR32 LTR ERVL -2 469 233 379 102 17 0 chr3 211654564 211654623 -15869955 - LTR32 LTR ERVL -383 88 29 408 113 0 0 chr3 211654623 211654676 -15869902 + AluJ/FLAM SINE Alu 12 64 -248 840 106 11 39 chr3 211654687 211654866 -15869712 + (GGAA)n Simple_repeat Simple_repeat 4 177 0 468 34 0 11 chr3 211654866 211654953 -15869625 + (GAAA)n Simple_repeat Simple_repeat 1 86 0 633 282 138 15 chr3 211655022 211655487 -15869091 - L1ME4a LINE L1 -2 6119 5598 25 0 0 0 chr3 211655552 211655577 -15869001 + AT_rich Low_complexity Low_complexity 1 25 0 1818 160 10 13 chr3 211655657 211655957 -15868621 - AluJb SINE Alu -13 299 1 2243 102 7 10 chr3 211655967 211656272 -15868306 - AluSq SINE Alu -9 304 1 189 176 0 0 chr3 211656537 211656571 -15868007 - MIR SINE MIR -102 106 73 2329 108 0 3 chr3 211656692 211656999 -15867579 - AluSg SINE Alu -4 306 1 1561 157 79 0 chr3 211657201 211657468 -15867110 + AluJb SINE Alu 1 288 -24 22 70 0 0 chr3 211657468 211657511 -15867067 + AT_rich Low_complexity Low_complexity 1 43 0 22 0 0 0 chr3 211657554 211657576 -15867002 + AT_rich Low_complexity Low_complexity 1 22 0 922 144 0 0 chr3 211657746 211657878 -15866700 + FLAM_C SINE Alu 1 132 -1 655 136 136 8 chr3 211658347 211658465 -15866113 + FLAM_C SINE Alu 1 133 0 21 0 0 0 chr3 211658465 211658486 -15866092 + AT_rich Low_complexity Low_complexity 1 21 0 2109 125 0 0 chr3 211658489 211658776 -15865802 + AluSq SINE Alu 1 287 -26 986 45 20 35 chr3 211658779 211658981 -15865597 + (TAAAA)n Simple_repeat Simple_repeat 1 199 0 2504 59 0 7 chr3 211659209 211659512 -15865066 + AluY SINE Alu 2 302 -9 2101 93 39 7 chr3 211660195 211660474 -15864104 + AluSc SINE Alu 3 290 -19 261 139 0 0 chr3 211660474 211660517 -15864061 + (GA)n Simple_repeat Simple_repeat 1 43 0 416 19 19 0 chr3 211660556 211660609 -15863969 + (GAAA)n Simple_repeat Simple_repeat 4 57 0 264 315 71 45 chr3 211660702 211660835 -15863743 - MIR SINE MIR -56 206 72 230 237 0 0 chr3 211661104 211661133 -15863445 + A-rich Low_complexity Low_complexity 1 29 -30 2317 83 0 49 chr3 211661133 211661458 -15863120 + AluSc SINE Alu 1 309 0 230 237 0 0 chr3 211661458 211661487 -15863091 + A-rich Low_complexity Low_complexity 28 59 0 183 80 0 0 chr3 211661658 211661683 -15862895 + (T)n Simple_repeat Simple_repeat 1 25 0 775 155 35 0 chr3 211661712 211661828 -15862750 - FLAM_C SINE Alu -22 121 2 831 171 16 153 chr3 211661953 211662080 -15862498 + AluJb SINE Alu 15 73 -239 794 64 0 9 chr3 211662080 211662190 -15862388 + (GAAA)n Simple_repeat Simple_repeat 4 112 0 831 171 16 153 chr3 211662190 211662383 -15862195 + AluJb SINE Alu 73 291 -21 2193 99 3 0 chr3 211662393 211662695 -15861883 + AluSx SINE Alu 1 303 0 1199 149 0 0 chr3 211662704 211662892 -15861686 + AluSg/x SINE Alu 121 308 -4 695 173 0 0 chr3 211662982 211663086 -15861492 + AluJb SINE Alu 201 304 -8 440 227 21 0 chr3 211663139 211663236 -15861342 + MER94 DNA DNA 22 120 -14 489 284 0 9 chr3 211663337 211663453 -15861125 + MIR SINE MIR 56 170 -92 1925 131 6 39 chr3 211663464 211663776 -15860802 + AluJb SINE Alu 4 305 -7 708 163 0 31 chr3 211663805 211663934 -15860644 + FLAM_C SINE Alu 11 135 -8 996 189 0 11 chr3 211664023 211664203 -15860375 - FRAM SINE Alu -1 175 1 2224 120 3 0 chr3 211664479 211664780 -15859798 - AluSx SINE Alu -10 302 1 981 212 50 0 chr3 211666006 211666204 -15858374 + MER3 DNA MER1_type 1 208 -1 2243 123 0 0 chr3 211666236 211666546 -15858032 + AluSx SINE Alu 1 310 -2 850 216 106 34 chr3 211666732 211666968 -15857610 + MIR SINE MIR 1 253 -9 181 214 90 90 chr3 211667010 211667099 -15857479 - L2 LINE L2 -6 3307 3219 825 143 0 0 chr3 211667586 211667705 -15856873 + FLAM_C SINE Alu 1 119 -24 1903 112 3 21 chr3 211667866 211668153 -15856425 - AluSx SINE Alu -30 282 1 307 274 183 11 chr3 211668665 211668840 -15855738 - MIR SINE MIR -56 206 2 1714 157 32 4 chr3 211668913 211669194 -15855384 - AluJo SINE Alu -23 289 1 36 16 0 48 chr3 211669207 211669269 -15855309 + AT_rich Low_complexity Low_complexity 1 59 0 249 33 0 0 chr3 211669651 211669681 -15854897 + (TTTTC)n Simple_repeat Simple_repeat 4 33 0 2163 92 53 0 chr3 211671289 211671573 -15853005 - AluSx SINE Alu -13 299 1 239 221 0 13 chr3 211671735 211671812 -15852766 - L1ME4a LINE L1 -7 6114 6039 22 0 0 0 chr3 211671883 211671905 -15852673 + AT_rich Low_complexity Low_complexity 1 22 0 2135 114 3 16 chr3 211673405 211673770 -15850808 - AluSx SINE Alu 0 361 1 320 308 128 8 chr3 211674532 211674665 -15849913 + MIR3 SINE MIR 12 160 -48 211 269 0 26 chr3 211674883 211674961 -15849617 + L3 LINE CR1 787 862 -715 3949 115 2 22 chr3 211675041 211675579 -15848999 + MER1A DNA MER1_type 1 527 0 226 229 86 29 chr3 211676448 211676518 -15848060 + MIR SINE MIR 80 153 -109 563 238 93 42 chr3 211676777 211676970 -15847608 - MER63A DNA MER1_type -7 203 1 1158 161 0 21 chr3 211677099 211677285 -15847293 - AluJb SINE Alu -14 298 117 495 350 111 41 chr3 211677511 211678298 -15846280 + L2 LINE L2 2315 3254 -18 207 0 0 0 chr3 211678326 211678349 -15846229 + (TCTCCC)n Simple_repeat Simple_repeat 4 26 0 2066 130 0 3 chr3 211678354 211678647 -15845931 - AluSg SINE Alu -13 297 6 200 309 106 46 chr3 211678807 211679024 -15845554 + L2 LINE L2 2748 2977 -337 2336 90 0 35 chr3 211679343 211679654 -15844924 + AluSx SINE Alu 1 300 -12 538 239 141 37 chr3 211680047 211680069 -15844509 - L1ME4a LINE L1 -1 6120 6102 2402 91 0 0 chr3 211680069 211680367 -15844211 + AluSp SINE Alu 1 298 -15 538 239 141 37 chr3 211680367 211680699 -15843879 - L1ME4a LINE L1 -19 6102 5729 239 271 70 8 chr3 211681615 211681744 -15842834 + Charlie7 DNA MER1_type 2435 2571 -41 923 192 0 0 chr3 211681744 211681895 -15842683 + FRAM SINE Alu 1 151 -25 24 0 0 0 chr3 211681909 211681933 -15842645 + AT_rich Low_complexity Low_complexity 1 24 0 2051 129 14 0 chr3 211682194 211682481 -15842097 + AluSx SINE Alu 5 295 -17 2142 142 40 0 chr3 211682581 211682904 -15841674 - L1PA13 LINE L1 -3 6160 5825 1104 226 128 32 chr3 211682936 211683119 -15841459 - L1ME4a LINE L1 0 6121 5957 1940 141 146 11 chr3 211683119 211683496 -15841082 - MSTA LTR MaLR 0 428 1 1104 226 128 32 chr3 211683496 211683804 -15840774 - L1ME4a LINE L1 -164 5957 5583 274 161 11 92 chr3 211684367 211684454 -15840124 - L1ME4a LINE L1 -45 6076 5997 2410 82 3 3 chr3 211684458 211684762 -15839816 - AluSx SINE Alu -8 304 1 245 282 31 31 chr3 211686193 211686356 -15838222 + L1M4 LINE L1 4882 5044 -1102 2177 107 0 28 chr3 211687266 211687583 -15836995 - AluSg SINE Alu -2 308 1 313 254 95 16 chr3 211688447 211688573 -15836005 - L1ME4a LINE L1 -1 6120 5985 713 271 29 9 chr3 211688725 211688935 -15835643 + MIR SINE MIR 47 260 -2 2425 87 10 3 chr3 211688993 211689303 -15835275 + AluSx SINE Alu 1 312 0 1788 164 29 26 chr3 211690283 211690593 -15833985 + AluJb SINE Alu 1 311 -1 212 286 32 0 chr3 211691982 211692045 -15832533 + CT-rich Low_complexity Low_complexity 2 66 0 472 267 68 68 chr3 211693313 211693504 -15831074 + MIR SINE MIR 2 192 -70 207 347 130 46 chr3 211693630 211693846 -15830732 - L2 LINE L2 -10 3262 3029 1938 115 56 24 chr3 211693893 211694032 -15830546 + AluSx SINE Alu 1 134 -178 2280 98 10 0 chr3 211694032 211694329 -15830249 + AluSx SINE Alu 1 300 -12 1938 115 56 24 chr3 211694329 211694477 -15830101 + AluSx SINE Alu 134 297 -15 509 198 30 0 chr3 211694491 211694592 -15829986 + U13 snRNA snRNA 1 104 0 2274 108 3 3 chr3 211694801 211695106 -15829472 - AluSx SINE Alu -7 305 1 1936 98 0 8 chr3 211695118 211695374 -15829204 - AluSg1 SINE Alu -18 291 38 208 250 0 0 chr3 211695658 211695706 -15828872 + (TATATG)n Simple_repeat Simple_repeat 6 53 0 2171 136 0 3 chr3 211696325 211696635 -15827943 + AluSx SINE Alu 1 309 -3 22 35 0 0 chr3 211696974 211697003 -15827575 + AT_rich Low_complexity Low_complexity 1 29 0 1305 172 0 14 chr3 211697059 211697280 -15827298 + AluJb SINE Alu 87 304 -8 1299 63 0 0 chr3 211698531 211698690 -15825888 - AluY SINE Alu -15 296 138 562 196 270 0 chr3 211699190 211699353 -15825225 - MER46C DNA MER2_type 0 338 132 292 129 21 151 chr3 211699436 211699481 -15825097 - MIR SINE MIR -116 146 117 2355 96 0 10 chr3 211699481 211699795 -15824783 + AluSq SINE Alu 1 311 -2 292 129 21 151 chr3 211699795 211699842 -15824736 - MIR SINE MIR -145 117 66 877 250 128 10 chr3 211700905 211701217 -15823361 - L1ME4a LINE L1 -2204 5604 5256 286 272 109 40 chr3 211701248 211701362 -15823216 - L1ME4a LINE L1 -944 5202 5097 2386 95 0 3 chr3 211701362 211701667 -15822911 + AluSx SINE Alu 1 304 -8 286 272 109 40 chr3 211701667 211701927 -15822651 - L1ME4a LINE L1 -1049 5097 4802 543 276 99 41 chr3 211702386 211702629 -15821949 + MIR SINE MIR 6 262 0 1080 200 0 31 chr3 211702757 211702885 -15821693 + AluJo SINE Alu 1 121 -191 194 0 0 37 chr3 211702885 211702912 -15821666 + (TAAAA)n Simple_repeat Simple_repeat 5 30 0 1080 200 0 31 chr3 211702912 211703008 -15821570 + AluJo SINE Alu 121 218 -94 349 118 0 0 chr3 211703008 211703059 -15821519 + FLAM_A SINE Alu 83 133 0 2543 60 0 3 chr3 211703080 211703382 -15821196 + AluY SINE Alu 1 301 -10 1956 114 4 4 chr3 211703890 211704170 -15820408 + AluSp SINE Alu 34 313 0 1872 139 6 41 chr3 211704491 211704807 -15819771 - AluJb SINE Alu -7 305 1 1351 238 73 67 chr3 211704807 211705303 -15819275 - MLT1H LTR MaLR -30 519 21 2048 81 0 4 chr3 211705795 211706054 -15818524 + AluSc SINE Alu 35 292 -17 664 71 0 79 chr3 211706055 211706648 -15817930 + (TA)n Simple_repeat Simple_repeat 1 546 0 720 54 0 79 chr3 211706661 211706942 -15817636 + (TA)n Simple_repeat Simple_repeat 1 258 0 1219 85 0 0 chr3 211707095 211707248 -15817330 + AluSg/x SINE Alu 148 300 -12 2260 69 38 7 chr3 211708304 211708595 -15815983 + AluSg1 SINE Alu 2 301 -8 957 56 48 0 chr3 211708605 211708731 -15815847 - L1P2 LINE L1 -687 5467 5336 1371 73 28 0 chr3 211708731 211708906 -15815672 + L1PA7 LINE L1 5972 6154 0 2050 71 85 0 chr3 211709187 211709469 -15815109 - AluY SINE Alu -5 306 1 330 140 0 0 chr3 211709570 211709627 -15814951 + HERVK11 LTR ERVK 279 335 -7618 21 36 0 0 chr3 211711345 211711373 -15813205 + AT_rich Low_complexity Low_complexity 1 28 0 8508 49 1 0 chr3 211711560 211712525 -15812053 - LTR5 LTR ERVK -3 966 1 414 84 11 168 chr3 211712525 211712620 -15811958 - SVA Other Other -450 936 857 58908 14 1 2 chr3 211712620 211719136 -15805442 - HERVK LTR ERVK -95 7148 637 665 53 0 85 chr3 211719282 211719711 -15804867 + (TA)n Simple_repeat Simple_repeat 1 392 0 526 71 0 86 chr3 211719726 211719923 -15804655 + (TA)n Simple_repeat Simple_repeat 1 180 0 2271 102 3 7 chr3 211720500 211720804 -15803774 - AluSx SINE Alu -9 303 1 245 156 0 47 chr3 211721138 211721202 -15803376 + GA-rich Low_complexity Low_complexity 5 65 0 1913 190 37 0 chr3 211721223 211721575 -15803003 - MLT1A1 LTR MaLR 0 365 1 312 336 27 13 chr3 211721775 211721924 -15802654 + MIR SINE MIR 41 191 -71 2079 137 3 0 chr3 211721990 211722289 -15802289 + AluSx SINE Alu 1 300 -12 1954 161 59 54 chr3 211723307 211723359 -15801219 - L1MB4 LINE L1 -8 6172 6122 2172 105 3 10 chr3 211723359 211723653 -15800925 - AluSq SINE Alu -21 292 1 1954 161 59 54 chr3 211723653 211724030 -15800548 - L1MB4 LINE L1 -58 6122 5742 914 149 32 0 chr3 211724044 211724198 -15800380 - MER44D DNA MER2_type 0 605 575 25 0 0 0 chr3 211724206 211724231 -15800347 + AT_rich Low_complexity Low_complexity 1 25 0 303 119 0 0 chr3 211725103 211725145 -15799433 - 5S rRNA rRNA -79 42 1 2065 121 0 0 chr3 211725449 211725762 -15798816 - AluSq SINE Alu 0 317 5 701 186 28 3 chr3 211725802 211725978 -15798600 + L1M2 LINE L1 5485 5665 -545 2344 107 0 0 chr3 211726394 211726703 -15797875 + AluSx SINE Alu 1 309 -3 1936 143 0 14 chr3 211727905 211728198 -15796380 + AluSx SINE Alu 1 289 -23 2064 129 40 35 chr3 211728232 211728605 -15795973 + THE1C LTR MaLR 1 375 0 1821 164 39 33 chr3 211728612 211728889 -15795689 - MLT1A1 LTR MaLR -3 362 81 2027 124 21 0 chr3 211728889 211729179 -15795399 - AluSg SINE Alu -14 296 1 1821 164 39 33 chr3 211729179 211729261 -15795317 - MLT1A1 LTR MaLR -284 81 1 2423 106 0 0 chr3 211730268 211730580 -15793998 - AluSx SINE Alu 0 312 1 269 246 157 9 chr3 211731090 211731214 -15793364 + MIR SINE MIR 19 158 -65 2746 136 9 25 chr3 211731367 211731406 -15793172 - MSTA LTR MaLR 0 428 390 2479 86 0 0 chr3 211731406 211731707 -15792871 + AluSc SINE Alu 1 301 -8 2746 136 9 25 chr3 211731707 211732102 -15792476 - MSTA LTR MaLR -38 390 1 277 266 56 42 chr3 211733230 211733373 -15791205 + MIR SINE MIR 13 157 -105 464 204 218 7 chr3 211733585 211733732 -15790846 + MER5A DNA MER1_type 3 180 -9 350 278 0 10 chr3 211734577 211734674 -15789904 - L1MB4 LINE L1 -357 5764 5669 3855 90 6 8 chr3 211734676 211735211 -15789367 - HSMAR2 DNA Mariner -1 1301 768 911 112 8 0 chr3 211735211 211735336 -15789242 - FLAM_C SINE Alu -4 139 14 2601 78 0 0 chr3 211735356 211735664 -15788914 - AluSq SINE Alu -5 308 1 4965 114 26 19 chr3 211735664 211736104 -15788474 - HSMAR2 DNA Mariner -526 776 327 2530 64 0 13 chr3 211736104 211736415 -15788163 - AluSc SINE Alu -2 307 1 4965 114 26 19 chr3 211736415 211736744 -15787834 - HSMAR2 DNA Mariner -975 327 2 244 204 129 21 chr3 211737896 211737945 -15786633 + Charlie7 DNA MER1_type 2509 2551 -61 2237 114 0 10 chr3 211737945 211738252 -15786326 + AluSx SINE Alu 1 304 -8 244 204 129 21 chr3 211738252 211738295 -15786283 + Charlie7 DNA MER1_type 2551 2611 -1 383 214 153 30 chr3 211738349 211738480 -15786098 - MER103 DNA DNA -13 153 7 644 249 89 14 chr3 211738655 211738719 -15785859 + MIR SINE MIR 7 65 -197 2297 100 3 0 chr3 211738719 211739018 -15785560 + AluSg SINE Alu 1 300 -10 644 249 89 14 chr3 211739018 211739166 -15785412 + MIR SINE MIR 65 235 -27 2307 86 3 0 chr3 211739478 211739769 -15784809 + AluSx SINE Alu 5 296 -16 922 143 37 37 chr3 211739854 211740043 -15784535 - L1MB8 LINE L1 0 6178 5990 180 0 0 0 chr3 211740261 211740281 -15784297 + (A)n Simple_repeat Simple_repeat 1 20 0 249 79 0 0 chr3 211740640 211740678 -15783900 - L1MA7 LINE L1 -6 6285 6248 1445 194 80 44 chr3 211741631 211741992 -15782586 - MLT1A2 LTR MaLR 0 374 1 2036 113 58 0 chr3 211742513 211742806 -15781772 + AluSg SINE Alu 1 310 0 510 261 42 0 chr3 211743259 211743401 -15781177 + MIR3 SINE MIR 58 205 -3 1491 169 32 104 chr3 211743571 211743973 -15780605 - MLT1A2 LTR MaLR 0 374 2 2201 129 137 8 chr3 211744545 211744924 -15779654 - MSTA LTR MaLR 0 428 1 1750 157 7 39 chr3 211745100 211745405 -15779173 + AluJo SINE Alu 1 295 -17 699 203 112 103 chr3 211745520 211745709 -15778869 + MIR SINE MIR 7 200 -62 2263 100 0 0 chr3 211745709 211746000 -15778578 + AluY SINE Alu 3 293 -18 699 203 112 103 chr3 211746000 211746052 -15778526 + MIR SINE MIR 200 250 -12 314 355 47 0 chr3 211746114 211746221 -15778357 + L2 LINE L2 3155 3266 -6 225 204 0 0 chr3 211746716 211746760 -15777818 + A-rich Low_complexity Low_complexity 1 44 0 231 36 0 0 chr3 211747056 211747084 -15777494 + (CAAA)n Simple_repeat Simple_repeat 2 29 0 2440 76 10 0 chr3 211747613 211747916 -15776662 - AluSq SINE Alu -7 306 1 22 0 0 0 chr3 211748683 211748705 -15775873 + AT_rich Low_complexity Low_complexity 1 22 0 1656 138 86 43 chr3 211749255 211749581 -15774997 + Tigger7 DNA MER2_type 1 340 -393 1028 119 0 13 chr3 211749580 211749731 -15774847 + Tigger7 DNA MER2_type 2339 2487 0 * 1750 148 11 11 chr3 211751092 211751370 -15773208 - AluJo SINE Alu -34 278 1 426 244 22 0 chr3 211751705 211751795 -15772783 - MER117 DNA MER1_type -82 115 24 2348 107 0 0 chr3 211754890 211755200 -15769378 - AluSg SINE Alu 0 310 1 2140 111 14 0 chr3 211755928 211756231 -15768347 + AluSx SINE Alu 1 307 0 301 219 59 34 chr3 211756490 211756609 -15767969 - MER5B DNA MER1_type -16 162 41 327 257 19 9 chr3 211756503 211756608 -15767970 + MER5A DNA MER1_type 43 148 -41 203 250 47 16 chr3 211757297 211757361 -15767217 + MER5A DNA MER1_type 26 91 -98 * 471 202 64 0 chr3 211757312 211757421 -15767157 - MER5B DNA MER1_type -31 147 32 2198 129 3 0 chr3 211757435 211757745 -15766833 - AluSx SINE Alu -1 311 1 281 287 30 10 chr3 211757832 211757933 -15766645 + MER5A DNA MER1_type 48 150 -39 * 487 252 21 35 chr3 211757844 211757987 -15766591 - MER5A DNA MER1_type -48 141 1 648 265 58 0 chr3 211758715 211758904 -15765674 - MIR SINE MIR -16 246 47 1980 148 0 10 chr3 211759348 211759646 -15764932 - AluJo SINE Alu -17 295 1 322 232 238 18 chr3 211760146 211760310 -15764268 - MIR SINE MIR -35 227 28 198 219 68 41 chr3 211760646 211760719 -15763859 - MIR SINE MIR -80 182 108 440 276 81 27 chr3 211761047 211761232 -15763346 + MIR3 SINE MIR 9 203 -5 2255 78 0 26 chr3 211761879 211762187 -15762391 + AluSx SINE Alu 1 300 -12 313 316 121 23 chr3 211763403 211763577 -15761001 - MIR SINE MIR -62 200 10 181 295 18 89 chr3 211763578 211763690 -15760888 - L2 LINE L2 -227 3045 2942 211 309 91 9 chr3 211763767 211763877 -15760701 - L2 LINE L2 -527 2787 2669 2043 115 0 13 chr3 211763927 211764232 -15760346 + AluSq SINE Alu 1 301 -12 552 264 138 27 chr3 211764510 211764771 -15759807 + L1MC4a LINE L1 5625 5914 -1894 24 0 0 0 chr3 211764831 211764855 -15759723 + AT_rich Low_complexity Low_complexity 1 24 0 483 220 53 20 chr3 211764885 211765035 -15759543 + L1MC5 LINE L1 7729 7883 -78 228 292 126 83 chr3 211765190 211765467 -15759111 + L2 LINE L2 2981 3269 -3 2134 103 0 0 chr3 211766088 211766380 -15758198 - AluY SINE Alu -19 292 1 380 102 0 0 chr3 211766523 211766582 -15757996 + (TTTA)n Simple_repeat Simple_repeat 3 61 0 625 200 8 0 chr3 211766613 211766733 -15757845 - AluJb SINE Alu -187 125 5 529 256 109 26 chr3 211768174 211768330 -15756248 - L2 LINE L2 -1 3271 3103 2521 105 21 16 chr3 211768348 211768721 -15755857 + THE1C LTR MaLR 1 375 0 2023 113 14 0 chr3 211768950 211769242 -15755336 + AluSx SINE Alu 1 296 -16 303 321 108 45 chr3 211769463 211769588 -15754990 - L2 LINE L2 -5 3267 3151 2095 125 0 0 chr3 211769588 211769885 -15754693 + AluSx SINE Alu 1 297 -15 303 321 108 45 chr3 211769885 211770046 -15754532 - L2 LINE L2 -121 3151 2963 2015 108 34 0 chr3 211770492 211770789 -15753789 + AluSg1 SINE Alu 2 308 -1 1935 103 4 0 chr3 211771019 211771282 -15753296 + AluSx SINE Alu 1 264 -48 182 323 46 0 chr3 211772248 211772313 -15752265 - MIR SINE MIR -77 185 118 1884 137 23 13 chr3 211772934 211773233 -15751345 + AluSx SINE Alu 1 302 -10 1950 106 3 20 chr3 211773275 211773576 -15751002 + AluSx SINE Alu 1 296 -16 218 184 0 0 chr3 211773775 211773813 -15750765 + CT-rich Low_complexity Low_complexity 1 38 0 360 163 185 0 chr3 211773860 211773952 -15750626 - L1MC4 LINE L1 -188 7854 7746 820 116 11 159 chr3 211773960 211774149 -15750429 + AluSx SINE Alu 5 165 -147 27 0 0 0 chr3 211774395 211774422 -15750156 + AT_rich Low_complexity Low_complexity 1 27 0 1116 150 110 113 chr3 211774422 211774722 -15749856 - AluJo SINE Alu -3 299 1 400 121 16 0 chr3 211775177 211775246 -15749332 - Alu SINE Alu 0 302 240 311 341 85 9 chr3 211775332 211775543 -15749035 - MIR SINE MIR -16 246 20 2184 98 0 0 chr3 211775845 211776141 -15748437 - AluSx SINE Alu -11 301 6 850 187 22 33 chr3 211776263 211776418 -15748160 + L1MC4 LINE L1 6769 6923 -1119 2139 108 3 0 chr3 211776418 211776713 -15747865 + AluSc SINE Alu 1 296 -13 850 187 22 33 chr3 211776713 211776739 -15747839 + L1MC4 LINE L1 6923 6948 -1094 * 2230 164 30 21 chr3 211776714 211777116 -15747462 + L1MB2 LINE L1 5419 5827 -344 1781 85 0 4 chr3 211777116 211777351 -15747227 + AluSg SINE Alu 1 234 -76 254 105 0 0 chr3 211777351 211777389 -15747189 - L1MA7 LINE L1 -55 6236 6199 342 207 9 18 chr3 211777457 211777568 -15747010 + GA-rich Low_complexity Low_complexity 3 112 0 315 320 48 24 chr3 211778373 211778498 -15746080 + L2 LINE L2 2985 3112 -160 25 31 0 0 chr3 211778658 211778690 -15745888 + AT_rich Low_complexity Low_complexity 1 32 0 1889 114 6 70 chr3 211778873 211779188 -15745390 - AluSx SINE Alu -17 295 1 1684 148 35 14 chr3 211779217 211779500 -15745078 + AluJo SINE Alu 3 291 -21 2002 147 0 0 chr3 211779510 211779817 -15744761 + AluSx SINE Alu 3 309 -3 26 0 0 0 chr3 211780129 211780155 -15744423 + AT_rich Low_complexity Low_complexity 1 26 0 550 252 8 8 chr3 211780191 211780322 -15744256 - MIR SINE MIR -109 153 23 504 229 0 10 chr3 211781062 211781158 -15743420 - MER5B DNA MER1_type -82 96 2 2166 102 6 13 chr3 211781622 211781937 -15742641 - AluSq SINE Alu 0 313 1 34 42 0 0 chr3 211782028 211782076 -15742502 + AT_rich Low_complexity Low_complexity 1 48 0 1914 133 3 10 chr3 211782078 211782380 -15742198 - AluJb SINE Alu -11 301 2 2364 83 3 3 chr3 211782911 211783224 -15741354 + AluSq SINE Alu 1 313 0 295 275 123 76 chr3 211783272 211783443 -15741135 + MER5A DNA MER1_type 11 189 0 1971 131 6 10 chr3 211783596 211783909 -15740669 + AluJo SINE Alu 1 312 0 322 271 0 42 chr3 211784176 211784294 -15740284 + HAL1b LINE L1 794 906 -442 2333 93 0 0 chr3 211784554 211784864 -15739714 - AluSx SINE Alu -2 310 1 1340 215 108 42 chr3 211785084 211785508 -15739070 - LTR16B LTR ERVL -12 452 1 2138 92 10 3 chr3 211785629 211785933 -15738645 + AluSq SINE Alu 1 306 -7 2284 87 7 0 chr3 211786033 211786332 -15738246 + AluSc SINE Alu 1 301 -8 386 272 0 22 chr3 211786333 211786425 -15738153 + L1MC4 LINE L1 6614 6703 -1339 * 388 303 0 0 chr3 211786398 211786487 -15738091 - L1MC4 LINE L1 -1340 6702 6614 381 255 0 43 chr3 211786445 211786539 -15738039 + L1MC4 LINE L1 6614 6703 -1339 * 351 250 43 43 chr3 211786491 211786583 -15737995 - L1MC4 LINE L1 -1339 6703 6612 * 1875 145 7 0 chr3 211787194 211787490 -15737088 + AluJb SINE Alu 1 298 -14 209 351 14 0 chr3 211787603 211787677 -15736901 - MIR SINE MIR -94 114 40 2164 113 0 0 chr3 211788115 211788417 -15736161 + AluSx SINE Alu 1 302 -10 266 87 22 0 chr3 211788584 211788630 -15735948 + (TTTA)n Simple_repeat Simple_repeat 2 48 0 270 292 159 61 chr3 211789056 211789320 -15735258 - L2 LINE L2 -21 3292 3003 2272 100 0 0 chr3 211789397 211789708 -15734870 + AluSx SINE Alu 1 311 -1 1635 150 11 17 chr3 211789719 211790006 -15734572 + AluSx SINE Alu 1 285 -27 771 211 16 58 chr3 211790699 211790889 -15733689 + MER91B DNA MER1_type 9 190 0 2295 88 0 0 chr3 211790929 211791224 -15733354 - AluSc SINE Alu -14 295 1 981 84 0 0 chr3 211791226 211791357 -15733221 - AluSp SINE Alu -181 132 2 625 247 65 6 chr3 211791357 211791527 -15733051 + MIR SINE MIR 37 216 -46 218 307 139 0 chr3 211791831 211791932 -15732646 + MIR SINE MIR 98 212 -50 26 0 0 0 chr3 211792454 211792480 -15732098 + AT_rich Low_complexity Low_complexity 1 26 0 2191 105 0 0 chr3 211792480 211792786 -15731792 - AluSx SINE Alu 0 312 7 1522 137 69 11 chr3 211792792 211793054 -15731524 - AluJb SINE Alu -19 293 17 1080 71 0 36 chr3 211844154 211844294 -15680284 + AluSq/x SINE Alu 1 135 -178 2113 123 0 16 chr3 211844294 211844611 -15679967 + AluSx SINE Alu 1 312 0 476 202 62 54 chr3 211845123 211845252 -15679326 - MER5B DNA MER1_type -48 130 1 228 263 45 95 chr3 211845567 211845746 -15678832 - L2 LINE L2 -5 3308 3139 334 209 0 55 chr3 211845780 211845871 -15678707 + L1ME4a LINE L1 5978 6063 -58 286 240 60 47 chr3 211846171 211846321 -15678257 - L1ME4a LINE L1 -4 6117 5966 43 20 0 0 chr3 211848325 211848375 -15676203 + AT_rich Low_complexity Low_complexity 1 50 0 1870 180 53 3 chr3 211848394 211848716 -15675862 + MER58B DNA MER1_type 4 341 0 287 225 107 29 chr3 211848792 211848940 -15675638 - MIR SINE MIR -56 206 39 272 260 21 10 chr3 211849244 211849340 -15675238 + LTR67 LTR ERVL 432 528 -29 563 173 31 24 chr3 211849510 211849637 -15674941 + MER103 DNA DNA 38 165 -1 30 27 0 0 chr3 211849708 211849745 -15674833 + AT_rich Low_complexity Low_complexity 1 37 0 387 234 71 58 chr3 211849818 211849884 -15674694 + L1ME LINE L1 5523 5587 -534 628 100 0 0 chr3 211849884 211849964 -15674614 - MADE1 DNA Mariner 0 80 1 387 234 71 58 chr3 211849964 211850051 -15674527 + L1ME LINE L1 5587 5678 -443 30 77 0 0 chr3 211850571 211850636 -15673942 + AT_rich Low_complexity Low_complexity 1 65 0 2206 109 17 7 chr3 211850795 211851097 -15673481 + AluSx SINE Alu 1 305 -7 1221 225 13 54 chr3 211851108 211851406 -15673172 + AluJo SINE Alu 1 286 -16 1821 158 30 7 chr3 211851602 211851905 -15672673 + AluJo SINE Alu 1 310 -2 1700 203 7 0 chr3 211852792 211853097 -15671481 - AluJo SINE Alu -4 308 2 2046 119 3 10 chr3 211853205 211853508 -15671070 + AluSx SINE Alu 1 301 -11 278 206 32 0 chr3 211854073 211854136 -15670442 + MLT1K LTR MaLR 524 588 0 538 186 12 111 chr3 211854137 211854309 -15670269 + L2 LINE L2 3159 3313 0 2382 102 0 0 chr3 211854627 211854931 -15669647 - AluSx SINE Alu -8 304 1 2388 94 0 0 chr3 211856363 211856671 -15667907 + AluY SINE Alu 1 308 -3 789 239 94 8 chr3 211856740 211856771 -15667807 + MIR SINE MIR 1 28 -234 2069 104 0 57 chr3 211856771 211857087 -15667491 + AluSg SINE Alu 1 298 -12 789 239 94 8 chr3 211857087 211857289 -15667289 + MIR SINE MIR 28 254 -8 320 268 94 31 chr3 211857876 211858003 -15666575 + L1ME LINE L1 5609 5743 -427 1771 184 0 7 chr3 211858016 211858325 -15666253 + AluJo SINE Alu 6 312 0 362 311 88 44 chr3 211858373 211858691 -15665887 - L2 LINE L2 -738 2576 2245 1017 126 0 0 chr3 211859175 211859318 -15665260 - MER6 DNA MER2_type 0 865 723 985 131 57 143 chr3 211859320 211859564 -15665014 + AluJb SINE Alu 84 306 -6 1583 102 8 13 chr3 211859564 211859800 -15664778 - MER6 DNA MER2_type -146 719 485 1737 124 0 8 chr3 211859809 211860050 -15664528 + AluSx SINE Alu 1 239 -73 356 265 165 35 chr3 211860336 211860476 -15664102 - MER112 DNA MER1_type -34 226 51 180 0 0 0 chr3 211860476 211860496 -15664082 + (TG)n Simple_repeat Simple_repeat 1 20 0 356 265 165 35 chr3 211860496 211860555 -15664023 - MER112 DNA MER1_type -209 51 1 399 241 269 28 chr3 211861045 211861190 -15663388 + MER5A DNA MER1_type 10 189 0 339 242 220 37 chr3 211861343 211861616 -15662962 + L1MC4a LINE L1 5617 5939 -1869 337 330 26 9 chr3 211862272 211862387 -15662191 - MIR SINE MIR -62 146 30 27 0 0 0 chr3 211863003 211863030 -15661548 + AT_rich Low_complexity Low_complexity 1 27 0 222 156 0 0 chr3 211863241 211863286 -15661292 + (TG)n Simple_repeat Simple_repeat 2 46 0 204 294 54 43 chr3 211863707 211863799 -15660779 - MIR3 SINE MIR -40 168 76 28 29 0 0 chr3 211865383 211865418 -15659160 + AT_rich Low_complexity Low_complexity 1 35 0 1963 121 3 7 chr3 211865422 211865720 -15658858 + AluSx SINE Alu 1 297 -15 249 108 0 0 chr3 211865722 211865759 -15658819 + (CAGA)n Simple_repeat Simple_repeat 2 38 0 227 207 207 0 chr3 211866283 211866341 -15658237 - L2 LINE L2 -18 3254 3185 2150 113 0 0 chr3 211866489 211866790 -15657788 + AluSx SINE Alu 1 301 -11 1287 189 49 26 chr3 211867013 211867277 -15657301 + AluJo SINE Alu 7 276 -36 22 0 0 0 chr3 211867282 211867304 -15657274 + AT_rich Low_complexity Low_complexity 1 22 0 1025 180 12 73 chr3 211867500 211867745 -15656833 - MER106A DNA MER1_type 0 236 7 2364 138 48 11 chr3 211867776 211868210 -15656368 + LTR7 LTR ERV1 1 450 0 907 236 24 9 chr3 211868302 211868514 -15656064 - MER58C DNA MER1_type 0 215 1 1121 182 9 9 chr3 211868576 211868796 -15655782 + L1MB3 LINE L1 5964 6183 0 244 303 136 15 chr3 211868875 211868921 -15655657 - MIR SINE MIR -114 148 109 2001 122 0 3 chr3 211868921 211869216 -15655362 + AluSx SINE Alu 1 294 -18 244 303 136 15 chr3 211869216 211869301 -15655277 - MIR SINE MIR -153 109 1 235 375 8 33 chr3 211869478 211869598 -15654980 + L2 LINE L2 3182 3298 -15 1627 161 32 4 chr3 211869709 211869988 -15654590 + AluJo SINE Alu 1 287 -25 2020 113 23 7 chr3 211870182 211870484 -15654094 - AluSx SINE Alu -5 307 1 603 129 242 0 chr3 211870487 211870611 -15653967 - FAM SINE Alu -14 171 18 2109 134 0 0 chr3 211871199 211871505 -15653073 - AluSx SINE Alu -6 306 1 344 267 62 75 chr3 211872563 211872709 -15651869 + L2 LINE L2 3170 3313 0 528 202 0 19 chr3 211872801 211872905 -15651673 + FLAM_A SINE Alu 22 123 -19 223 208 21 0 chr3 211872974 211873022 -15651556 - L2 LINE L2 -8 3264 3216 898 147 0 0 chr3 211873794 211873930 -15650648 + AluSq/x SINE Alu 1 136 -176 21 36 0 0 chr3 211873930 211873958 -15650620 + AT_rich Low_complexity Low_complexity 1 28 0 2022 105 3 10 chr3 211873958 211874253 -15650325 + AluSg SINE Alu 4 296 -14 371 309 133 22 chr3 211874681 211874862 -15649716 + MIR SINE MIR 20 220 -42 1885 143 3 26 chr3 211875429 211875737 -15648841 - AluJo SINE Alu -11 301 1 365 258 124 67 chr3 211875841 211876019 -15648559 - MIR3 SINE MIR -1 207 20 2787 175 20 37 chr3 211876112 211876366 -15648212 - L1MB3 LINE L1 0 6183 5926 2282 80 0 0 chr3 211876366 211876667 -15647911 - AluY SINE Alu -10 301 1 2787 175 20 37 chr3 211876667 211877007 -15647571 - L1MB3 LINE L1 -257 5926 5599 1834 138 3 22 chr3 211877072 211877390 -15647188 + AluSx SINE Alu 1 312 0 193 238 150 25 chr3 211877539 211877619 -15646959 + L3 LINE CR1 1487 1576 -1 4937 128 37 16 chr3 211877902 211878548 -15646030 + Tigger1 DNA MER2_type 1597 2265 -153 2021 126 0 3 chr3 211878548 211878850 -15645728 + AluSc SINE Alu 1 301 -8 4937 128 37 16 chr3 211878850 211879008 -15645570 + Tigger1 DNA MER2_type 2265 2418 0 961 134 94 12 chr3 211879188 211879359 -15645219 - MER5A DNA MER1_type -4 185 1 270 81 0 0 chr3 211879556 211879593 -15644985 + (T)n Simple_repeat Simple_repeat 1 37 0 25 0 0 0 chr3 211879920 211879945 -15644633 + AT_rich Low_complexity Low_complexity 1 25 0 24 53 0 0 chr3 211880779 211880817 -15643761 + AT_rich Low_complexity Low_complexity 1 38 0 2160 85 0 19 chr3 211883968 211884275 -15640303 + AluSq SINE Alu 1 301 -12 420 57 19 0 chr3 211885818 211885871 -15638707 - AluJ/FRAM SINE Alu -33 279 226 825 133 31 0 chr3 211885874 211886002 -15638576 - FLAM_C SINE Alu 0 143 12 1550 197 58 55 chr3 211886133 211886190 -15638388 - L1MB7 LINE L1 -18 6166 6111 2023 133 0 10 chr3 211886190 211886499 -15638079 + AluSx SINE Alu 3 308 -4 1550 197 58 55 chr3 211886499 211886710 -15637868 - L1MB7 LINE L1 -73 6111 5894 1833 133 17 17 chr3 211886710 211887004 -15637574 - AluJo SINE Alu -18 294 1 1550 197 58 55 chr3 211887004 211887151 -15637427 - L1MB7 LINE L1 -290 5894 5749 726 200 0 0 chr3 211887158 211887293 -15637285 - FLAM_A SINE Alu 0 142 8 21 0 0 0 chr3 211887359 211887380 -15637198 + AT_rich Low_complexity Low_complexity 1 21 0 197 255 6 25 chr3 211888560 211888641 -15635937 + MIR SINE MIR 104 185 -23 1768 100 4 64 chr3 211888642 211888922 -15635656 - AluSq SINE Alu -50 263 1 860 223 0 0 chr3 211889147 211889313 -15635265 + FRAM SINE Alu 1 166 0 23 54 0 0 chr3 211889319 211889356 -15635222 + AT_rich Low_complexity Low_complexity 1 37 0 216 306 90 9 chr3 211889485 211889596 -15634982 - L2 LINE L2 -1 3312 3193 216 0 0 0 chr3 211889880 211889904 -15634674 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2237 101 10 0 chr3 211890155 211890462 -15634116 + AluSq SINE Alu 1 310 -3 26 0 0 0 chr3 211890828 211890854 -15633724 + AT_rich Low_complexity Low_complexity 1 26 0 1035 222 36 4 chr3 211891080 211891305 -15633273 + Charlie8 DNA MER1_type 1 232 -2185 468 51 0 0 chr3 211891494 211891553 -15633025 + (TC)n Simple_repeat Simple_repeat 2 60 0 26 64 0 0 chr3 211892875 211892922 -15631656 + AT_rich Low_complexity Low_complexity 1 47 0 185 191 0 21 chr3 211893832 211893879 -15630699 + CT-rich Low_complexity Low_complexity 2 47 0 23 0 0 0 chr3 211894913 211894936 -15629642 + AT_rich Low_complexity Low_complexity 1 23 0 214 184 0 0 chr3 211895232 211895270 -15629308 + L2 LINE L2 3213 3250 -22 420 275 82 58 chr3 211896224 211896431 -15628147 + MIR SINE MIR 8 219 -43 29 0 0 0 chr3 211897682 211897711 -15626867 + AT_rich Low_complexity Low_complexity 1 29 0 2230 94 13 0 chr3 211898906 211899215 -15625363 - AluSq SINE Alu 0 313 1 2203 84 3 0 chr3 211899217 211899504 -15625074 - AluSp SINE Alu -25 288 1 334 271 148 35 chr3 211900230 211900289 -15624289 + MER112 DNA MER1_type 1 52 -208 180 0 0 0 chr3 211900289 211900309 -15624269 + (CA)n Simple_repeat Simple_repeat 1 20 0 334 271 148 35 chr3 211900309 211900452 -15624126 + MER112 DNA MER1_type 52 226 -34 584 100 11 33 chr3 211900720 211900810 -15623768 + FLAM_C SINE Alu 24 111 -32 201 154 0 0 chr3 211900812 211900851 -15623727 + T-rich Low_complexity Low_complexity 1 39 0 531 238 189 77 chr3 211901207 211901319 -15623259 - L1ME4a LINE L1 -1 6120 6022 1902 109 42 0 chr3 211901319 211901603 -15622975 + AluSg SINE Alu 1 296 -14 531 238 189 77 chr3 211901603 211901856 -15622722 - L1ME4a LINE L1 -99 6022 5714 869 240 11 6 chr3 211902135 211902318 -15622260 + Tigger7 DNA MER2_type 9 192 -541 2114 102 0 10 chr3 211902318 211902621 -15621957 - AluSg SINE Alu -10 300 1 23 0 0 0 chr3 211902676 211902699 -15621879 + AT_rich Low_complexity Low_complexity 1 23 0 1692 161 14 0 chr3 211902909 211903194 -15621384 - AluSx SINE Alu -19 293 5 1036 167 0 0 chr3 211903228 211903402 -15621176 + AluJb SINE Alu 129 302 -10 1964 123 10 3 chr3 211903534 211903842 -15620736 + AluSx SINE Alu 1 310 -2 2103 108 7 0 chr3 211905388 211905694 -15618884 + AluSq SINE Alu 1 308 -5 2133 104 0 0 chr3 211905705 211905993 -15618585 + AluSx SINE Alu 3 290 -22 8260 136 70 4 chr3 211906676 211908041 -15616537 + Tigger1 DNA MER2_type 1 1455 -963 1955 117 36 0 chr3 211908041 211908322 -15616256 - AluSx SINE Alu -15 297 7 2050 105 27 7 chr3 211908577 211908872 -15615706 + AluSx SINE Alu 1 301 -11 198 320 110 20 chr3 211909932 211910032 -15614546 - MIR SINE MIR -117 145 37 2148 109 3 0 chr3 211910370 211910672 -15613906 - AluSx SINE Alu -9 303 1 309 290 29 65 chr3 211911010 211911151 -15613427 + MIR SINE MIR 11 149 -59 350 250 80 0 chr3 211911218 211911330 -15613248 + MIR3 SINE MIR 63 183 -25 315 339 15 15 chr3 211912907 211913037 -15611541 - L3 LINE CR1 -852 725 596 201 239 0 0 chr3 211913943 211913989 -15610589 + (CA)n Simple_repeat Simple_repeat 2 47 0 1467 170 7 41 chr3 211914210 211914481 -15610097 + AluJo SINE Alu 37 298 -14 2192 104 3 7 chr3 211914610 211914917 -15609661 - AluSq SINE Alu -7 306 1 318 290 10 40 chr3 211914929 211915029 -15609549 - MIR SINE MIR -14 248 152 2174 102 7 10 chr3 211915043 211915338 -15609240 - AluSx SINE Alu -18 294 1 225 313 191 15 chr3 211916435 211916566 -15608012 + MIR SINE MIR 32 185 -77 360 322 121 52 chr3 211916571 211916596 -15607982 - L2 LINE L2 0 3272 3250 2202 116 7 3 chr3 211916596 211916899 -15607679 + AluSx SINE Alu 1 304 -8 360 322 121 52 chr3 211916899 211917277 -15607301 - L2 LINE L2 -22 3250 2841 2256 117 0 3 chr3 211917437 211917744 -15606834 + AluSx SINE Alu 1 306 -6 426 247 0 35 chr3 211917903 211918073 -15606505 + G-rich Low_complexity Low_complexity 1 164 0 241 194 56 0 chr3 211918095 211918167 -15606411 + GA-rich Low_complexity Low_complexity 1 76 0 338 319 27 65 chr3 211918272 211918535 -15606043 + L1ME4a LINE L1 3435 3687 -2459 322 269 20 42 chr3 211918667 211918820 -15605758 + L1ME4a LINE L1 4904 5051 -1095 1192 143 30 0 chr3 211918820 211918988 -15605590 + FAM SINE Alu 1 173 -2 322 269 20 42 chr3 211918988 211919002 -15605576 + L1ME4a LINE L1 5051 5064 -1082 384 252 109 17 chr3 211919119 211919238 -15605340 + L1ME4a LINE L1 5558 5687 -2121 835 189 0 19 chr3 211919239 211919398 -15605180 + Tigger1 DNA MER2_type 2 157 -2261 * 1239 143 29 14 chr3 211919391 211919601 -15604977 + Tigger1 DNA MER2_type 2206 2418 0 507 256 79 6 chr3 211919602 211919766 -15604812 + L1ME4a LINE L1 5691 5866 -255 198 0 0 0 chr3 211919978 211920000 -15604578 + (GA)n Simple_repeat Simple_repeat 1 22 0 * 229 49 0 49 chr3 211919999 211920040 -15604538 + (TA)n Simple_repeat Simple_repeat 2 40 0 25 31 0 0 chr3 211920116 211920148 -15604430 + AT_rich Low_complexity Low_complexity 1 32 0 449 257 164 0 chr3 211920319 211920471 -15604107 - MIR SINE MIR -63 199 23 355 286 83 36 chr3 211920633 211920801 -15603777 + L1ME LINE L1 5526 5701 -420 227 245 0 0 chr3 211920836 211920885 -15603693 + (CA)n Simple_repeat Simple_repeat 1 49 0 1074 247 9 9 chr3 211921813 211922036 -15602542 - MER58A DNA MER1_type 0 224 2 2131 113 0 3 chr3 211922052 211922360 -15602218 - AluSx SINE Alu 0 307 1 2195 107 30 0 chr3 211922756 211923054 -15601524 + AluSc SINE Alu 1 307 -2 273 258 15 15 chr3 211923492 211923558 -15601020 - L2 LINE L2 -12 3301 3236 539 269 82 99 chr3 211924415 211924828 -15599750 + L2 LINE L2 2864 3269 -3 433 262 6 49 chr3 211925686 211925850 -15598728 + L1MC5 LINE L1 7744 7900 -61 1009 190 6 0 chr3 211926329 211926503 -15598075 - AluJb SINE Alu -18 294 120 195 139 0 0 chr3 211926503 211926539 -15598039 + (T)n Simple_repeat Simple_repeat 1 36 0 634 300 61 29 chr3 211927449 211927726 -15596852 + MLT1L LTR MaLR 17 302 -313 356 309 16 8 chr3 211927726 211927849 -15596729 + L1M3d LINE L1 415 538 -5765 1622 177 18 7 chr3 211927887 211928170 -15596408 + AluJb SINE Alu 1 286 -26 397 195 0 27 chr3 211928177 211928477 -15596101 + (TA)n Simple_repeat Simple_repeat 1 291 0 310 264 11 22 chr3 211928481 211928560 -15596018 + L1MC4 LINE L1 6614 6693 -1349 351 0 0 0 chr3 211928560 211928599 -15595979 + (GA)n Simple_repeat Simple_repeat 2 40 0 310 264 11 22 chr3 211928599 211928610 -15595968 + L1MC4 LINE L1 6693 6703 -1339 245 348 37 43 chr3 211928651 211928815 -15595763 + L1M3d LINE L1 882 1044 -5259 3627 213 45 20 chr3 211928907 211929939 -15594639 + L1MB2 LINE L1 777 1792 -4521 2420 218 82 9 chr3 211929938 211930946 -15593632 - L1M4 LINE L1 -3301 3081 2006 * 230 274 29 20 chr3 211930984 211931086 -15593492 - L1M4 LINE L1 -4535 1849 1747 2169 118 10 3 chr3 211931101 211931406 -15593172 - AluSq SINE Alu -6 307 1 9725 166 34 59 chr3 211931432 211932153 -15592425 + L1MB2 LINE L1 3332 4070 -2337 803 172 0 0 chr3 211932153 211932275 -15592303 + FLAM_C SINE Alu 1 122 -21 9725 166 34 59 chr3 211932275 211933664 -15590914 + L1MB2 LINE L1 4070 5493 -914 1227 220 116 36 chr3 211933664 211934027 -15590551 + MSTD LTR MaLR 1 392 -4 9725 166 34 59 chr3 211934027 211934903 -15589675 + L1MB2 LINE L1 5493 6357 -50 2104 125 3 3 chr3 211934903 211935200 -15589378 - AluSx SINE Alu -15 297 1 9725 166 34 59 chr3 211935200 211935249 -15589329 + L1MB2 LINE L1 6357 6406 -1 587 217 149 6 chr3 211935366 211935541 -15589037 + MLT1L LTR MaLR 416 615 0 609 236 8 8 chr3 211935579 211935706 -15588872 + L2 LINE L2 3186 3312 -1 183 229 143 29 chr3 211935728 211935798 -15588780 + L2 LINE L2 2976 3053 -219 2423 93 0 6 chr3 211935885 211936198 -15588380 - AluSx SINE Alu -1 311 1 224 286 89 0 chr3 211936249 211936305 -15588273 + L2 LINE L2 3119 3179 -93 229 306 82 0 chr3 211936345 211936430 -15588148 + L2 LINE L2 3210 3301 -12 2157 94 35 3 chr3 211936557 211936843 -15587735 + AluSq SINE Alu 1 295 -18 1641 193 24 7 chr3 211937144 211937434 -15587144 - AluJo SINE Alu -16 296 2 2266 112 0 3 chr3 211937593 211937889 -15586689 + AluSx SINE Alu 1 295 -17 901 170 132 11 chr3 211938088 211938270 -15586308 - MER3 DNA MER1_type -1 208 5 2209 98 0 0 chr3 211939859 211940144 -15584434 - AluSx SINE Alu -14 298 14 381 281 43 36 chr3 211940161 211940300 -15584278 - MIR3 SINE MIR -53 155 16 2818 10 0 0 chr3 211941201 211941503 -15583075 + AluYa5 SINE Alu 1 302 -9 438 204 115 26 chr3 211941522 211941635 -15582943 - L2 LINE L2 -1 3271 3149 384 298 164 0 chr3 211942014 211942185 -15582393 - L1ME LINE L1 -298 5823 5625 2423 88 3 0 chr3 211942605 211942911 -15581667 - AluSp SINE Alu -6 307 1 726 191 56 8 chr3 211943126 211943252 -15581326 - FLAM_A SINE Alu -1 132 1 1869 132 14 21 chr3 211943260 211943548 -15581030 - AluJo SINE Alu -26 286 1 613 290 49 35 chr3 211944514 211944859 -15579719 - L1ME4a LINE L1 -248 5873 5524 25 99 0 0 chr3 211944859 211944940 -15579638 + AT_rich Low_complexity Low_complexity 1 81 0 2122 120 0 0 chr3 211946319 211946610 -15577968 + AluSx SINE Alu 2 292 -20 198 316 25 0 chr3 211946946 211947025 -15577553 - MIR SINE MIR -116 146 66 402 307 14 50 chr3 211947261 211947304 -15577274 - MER5A DNA MER1_type 0 189 146 2046 135 14 0 chr3 211947304 211947600 -15576978 - AluSx SINE Alu -12 300 1 402 307 14 50 chr3 211947600 211947696 -15576882 - MER5A DNA MER1_type -43 146 55 208 323 42 31 chr3 211947614 211947710 -15576868 + MER5A DNA MER1_type 63 159 -30 * 1921 116 3 21 chr3 211948609 211948917 -15575661 - AluSx SINE Alu 0 305 3 1302 135 59 55 chr3 211949263 211949500 -15575078 + AluJo SINE Alu 48 285 -27 1040 100 0 7 chr3 211950014 211950154 -15574424 - AluSg/x SINE Alu -10 300 162 1215 96 25 0 chr3 211950154 211950311 -15574267 - AluSg/x SINE Alu -25 287 127 2188 129 3 0 chr3 211950315 211950626 -15573952 - AluSx SINE Alu 0 312 1 189 0 0 0 chr3 211950709 211950730 -15573848 + (TAA)n Simple_repeat Simple_repeat 2 22 0 611 215 113 40 chr3 211951087 211951334 -15573244 - L1MC4a LINE L1 -1813 5995 5731 374 341 60 4 chr3 211952202 211952451 -15572127 + L1ME4a LINE L1 5623 5885 -236 844 171 16 0 chr3 211952609 211952738 -15571840 - AluJo SINE Alu -177 135 5 252 143 0 0 chr3 211952880 211952922 -15571656 + (A)n Simple_repeat Simple_repeat 1 42 0 255 344 114 37 chr3 211953455 211953728 -15570850 + L2 LINE L2 2955 3248 -24 189 171 0 0 chr3 211955124 211955159 -15569419 + (CTATT)n Simple_repeat Simple_repeat 2 36 0 1906 85 20 138 chr3 211955162 211955516 -15569062 - AluYb8 SINE Alu -6 312 1 2388 109 0 0 chr3 211956194 211956505 -15568073 + AluSx SINE Alu 1 311 -1 643 249 118 0 chr3 211957318 211957487 -15567091 - MER5A DNA MER1_type 0 189 1 1681 139 20 0 chr3 211958245 211958496 -15566082 + AluSx SINE Alu 1 256 -56 1628 90 0 0 chr3 211958606 211958806 -15565772 + AluSp SINE Alu 1 200 -113 800 130 8 0 chr3 211958854 211958977 -15565601 + AluSp SINE Alu 181 304 -9 2151 99 7 0 chr3 211958993 211959303 -15565275 + AluY SINE Alu 1 312 0 357 258 138 6 chr3 211959320 211959479 -15565099 - L1ME4a LINE L1 -176 5945 5766 2182 103 0 23 chr3 211959906 211960207 -15564371 - AluSx SINE Alu -18 294 1 3099 121 5 16 chr3 211961037 211961233 -15563345 + MSTB LTR MaLR 1 198 -228 2077 137 0 16 chr3 211961233 211961540 -15563038 + AluJb SINE Alu 2 303 -9 3099 121 5 16 chr3 211961540 211961774 -15562804 + MSTB LTR MaLR 198 426 0 6353 189 85 52 chr3 211961776 211963304 -15561274 + MSTB-int LTR MaLR 3 1580 0 2842 159 14 0 chr3 211963304 211963724 -15560854 + MSTB LTR MaLR 1 426 0 1511 195 25 7 chr3 211964002 211964279 -15560299 + AluJo SINE Alu 1 282 -30 354 179 0 0 chr3 211964226 211964282 -15560296 + AluJ/FRAM SINE Alu 230 285 -17 180 300 0 0 chr3 211965633 211965683 -15558895 - MIR SINE MIR -126 82 33 2324 101 0 0 chr3 211965914 211966212 -15558366 + AluSx SINE Alu 1 298 -14 529 260 40 11 chr3 211966390 211966567 -15558011 - MIR SINE MIR -79 183 2 547 258 32 38 chr3 211966958 211967144 -15557434 + MIR SINE MIR 28 212 -50 2356 67 3 0 chr3 211967584 211967886 -15556692 - AluSp SINE Alu 0 303 1 183 243 0 0 chr3 211967963 211968000 -15556578 + MIR SINE MIR 219 255 -7 207 282 99 0 chr3 211968126 211968197 -15556381 + MIR3 SINE MIR 99 176 -32 193 268 56 0 chr3 211969289 211969360 -15555218 - L2 LINE L2 -356 2957 2883 2405 57 0 27 chr3 211969367 211969668 -15554910 - AluY SINE Alu -18 293 1 2136 126 3 23 chr3 211969808 211970118 -15554460 + AluSx SINE Alu 1 304 -8 703 170 186 0 chr3 211970178 211970372 -15554206 - Charlie1a DNA MER1_type 0 1455 1226 3722 161 58 29 chr3 211970372 211970665 -15553913 + L1PB4 LINE L1 5392 5675 -481 2073 94 4 0 chr3 211970665 211970932 -15553646 + AluSp SINE Alu 39 306 -7 3722 161 58 29 chr3 211970932 211971359 -15553219 + L1PB4 LINE L1 5675 6133 -23 4277 259 74 39 chr3 211971375 211972574 -15552004 - Charlie1a DNA MER1_type -209 1246 6 579 239 32 0 chr3 211972577 211972732 -15551846 + MIR SINE MIR 7 166 -96 424 288 8 8 chr3 211973446 211973571 -15551007 + MIR SINE MIR 20 144 -118 2461 84 3 0 chr3 211974138 211974448 -15550130 - AluSx SINE Alu -1 311 1 1401 189 61 18 chr3 211975415 211975695 -15548883 - AluJo SINE Alu -20 292 1 182 151 38 38 chr3 211975872 211975925 -15548653 + L2 LINE L2 2447 2499 -815 1486 243 158 31 chr3 211976121 211976640 -15547938 - MLT1G1 LTR MaLR -8 587 3 299 306 89 8 chr3 211976804 211976928 -15547650 - MIR SINE MIR -128 134 1 321 294 159 12 chr3 211977862 211978025 -15546553 + MIR3 SINE MIR 11 197 -11 276 236 34 22 chr3 211978501 211978604 -15545974 + (TATATG)n Simple_repeat Simple_repeat 1 104 0 207 219 0 0 chr3 211979102 211979143 -15545435 + MIR SINE MIR 109 149 -113 937 155 0 0 chr3 211979151 211979293 -15545285 + FLAM_C SINE Alu 1 142 -1 2116 102 32 0 chr3 211979884 211980169 -15544409 + AluSx SINE Alu 1 294 -18 239 88 0 0 chr3 211980596 211980630 -15543948 + MIR SINE MIR 112 145 -63 430 248 37 0 chr3 211980815 211980924 -15543654 - MER63A DNA MER1_type 0 210 98 482 150 12 0 chr3 211980952 211981032 -15543546 + AluSp/q SINE Alu 212 292 -21 23 0 0 0 chr3 211981032 211981055 -15543523 + AT_rich Low_complexity Low_complexity 1 23 0 539 165 55 18 chr3 211981055 211981164 -15543414 - MER63A DNA MER1_type 0 113 1 223 26 0 53 chr3 211981503 211981541 -15543037 + (TTCC)n Simple_repeat Simple_repeat 1 36 0 2358 96 0 0 chr3 211981541 211981833 -15542745 - AluSx SINE Alu -20 292 1 2316 92 7 7 chr3 211982672 211982976 -15541602 - AluSc SINE Alu -2 307 4 957 244 32 0 chr3 211983080 211983297 -15541281 - MER58A DNA MER1_type 0 224 1 281 291 76 76 chr3 211985068 211985240 -15539338 + MARNA DNA Mariner 400 571 -15 2344 115 0 6 chr3 211985439 211985753 -15538825 + AluSq SINE Alu 1 312 -1 818 160 0 8 chr3 211986594 211986719 -15537859 - FLAM_C SINE Alu -19 124 1 640 200 176 117 chr3 211986722 211987159 -15537419 + L1MC/D LINE L1 5367 5830 -1985 2377 97 0 0 chr3 211987384 211987682 -15536896 + AluSx SINE Alu 1 298 -14 278 150 0 17 chr3 211988255 211988315 -15536263 + (CA)n Simple_repeat Simple_repeat 2 60 0 212 302 142 19 chr3 211988802 211988908 -15535670 - MIR3 SINE MIR -84 124 6 2416 90 0 0 chr3 211990623 211990935 -15533643 - AluSx SINE Alu 0 312 1 207 0 0 0 chr3 211991210 211991233 -15533345 + (A)n Simple_repeat Simple_repeat 1 23 0 390 235 12 12 chr3 211991346 211991431 -15533147 + L2 LINE L2 3225 3309 -4 1966 130 7 17 chr3 211992717 211993017 -15531561 - AluSx SINE Alu -15 297 1 2315 95 3 0 chr3 211993502 211993798 -15530780 + AluSp SINE Alu 1 297 -16 2200 96 7 7 chr3 211993873 211994178 -15530400 + AluSx SINE Alu 3 307 0 2316 85 0 0 chr3 211994597 211994908 -15529670 + AluSg SINE Alu 1 311 0 2266 70 7 30 chr3 211995200 211995501 -15529077 - AluSp SINE Alu -6 307 14 2476 86 0 0 chr3 211995513 211995817 -15528761 - AluSx SINE Alu -8 304 1 191 186 23 0 chr3 211995826 211995869 -15528709 - MIR SINE MIR -16 246 203 2505 46 0 0 chr3 211996897 211997178 -15527400 + AluY SINE Alu 1 281 -30 202 227 0 15 chr3 211997974 211998040 -15526538 + T-rich Low_complexity Low_complexity 1 65 0 1612 181 0 21 chr3 211998047 211998334 -15526244 - AluJo SINE Alu -31 281 1 1460 191 31 53 chr3 211998348 211998667 -15525911 - AluJo SINE Alu 0 312 1 2240 104 7 10 chr3 211998735 211999042 -15525536 - AluSg SINE Alu -4 306 1 2275 128 0 0 chr3 211999282 211999588 -15524990 - AluSx SINE Alu -6 306 1 538 174 31 0 chr3 211999588 211999686 -15524892 + MER45 DNA AcHobo 1480 1580 -1 322 269 39 0 chr3 212000303 212000407 -15524171 + L1ME3A LINE L1 6055 6162 -8 255 225 261 9 chr3 212000410 212000521 -15524057 - L1ME4a LINE L1 -14 6107 5969 2062 128 7 3 chr3 212000538 212000834 -15523744 + AluSx SINE Alu 1 297 -15 243 229 16 0 chr3 212000927 212000988 -15523590 - L1ME4a LINE L1 -334 5787 5726 2031 151 0 3 chr3 212003409 212003714 -15520864 + AluSx SINE Alu 1 304 -8 2421 63 0 13 chr3 212004006 212004308 -15520270 + AluY SINE Alu 1 298 -13 2111 78 3 99 chr3 212005068 212005401 -15519177 - AluSq SINE Alu -12 301 1 231 259 0 62 chr3 212006633 212006714 -15517864 + MIR SINE MIR 117 192 -70 1035 268 169 17 chr3 212006879 212007293 -15517285 + MLT1F LTR MaLR 16 492 -50 769 191 0 22 chr3 212007296 212007469 -15517109 + FLAM_A SINE Alu 1 170 0 2270 105 3 7 chr3 212007491 212007796 -15516782 + AluSx SINE Alu 1 304 -8 249 288 109 23 chr3 212008379 212008591 -15515987 - MIR SINE MIR -9 253 17 1732 144 37 17 chr3 212008831 212009130 -15515448 + AluJb SINE Alu 1 305 -7 2032 127 17 3 chr3 212009130 212009421 -15515157 + AluSx SINE Alu 1 296 -16 363 198 77 22 chr3 212010146 212010237 -15514341 + AluSg/x SINE Alu 169 255 -45 5691 62 1 38 chr3 212010239 212010338 -15514240 + L1PA6 LINE L1 5399 5500 -654 2415 53 0 17 chr3 212010338 212010638 -15513940 + AluY SINE Alu 2 296 -15 5691 62 1 38 chr3 212010638 212011323 -15513255 + L1PA6 LINE L1 5500 6154 0 1590 140 9 0 chr3 212011339 212011561 -15513017 + AluSx SINE Alu 12 235 -77 231 36 0 0 chr3 212011586 212011614 -15512964 + (GAAA)n Simple_repeat Simple_repeat 2 29 0 6982 61 12 12 chr3 212011661 212012078 -15512500 + L1PA8 LINE L1 5066 5482 -690 2512 73 3 0 chr3 212012078 212012381 -15512197 + AluSp SINE Alu 1 304 -9 6982 61 12 12 chr3 212012381 212013063 -15511515 + L1PA8 LINE L1 5481 6171 -1 2201 123 7 0 chr3 212013941 212014242 -15510336 + AluSx SINE Alu 1 303 -9 2348 79 0 47 chr3 212014712 212014847 -15509731 + AluSx SINE Alu 1 141 -171 2349 95 0 0 chr3 212014847 212015142 -15509436 + AluSg1 SINE Alu 1 295 -14 1374 122 0 48 chr3 212015094 212015324 -15509254 + AluSg/x SINE Alu 83 301 -9 2348 79 0 47 chr3 212015142 212015324 -15509254 + AluSx SINE Alu 141 303 -9 27 62 0 0 chr3 212015456 212015504 -15509074 + AT_rich Low_complexity Low_complexity 1 48 0 404 157 79 39 chr3 212015641 212015785 -15508793 + AluYb8 SINE Alu 3 133 -175 1694 129 8 16 chr3 212016052 212016332 -15508246 + AluSq SINE Alu 39 316 0 1884 154 0 0 chr3 212016986 212017271 -15507307 - AluJb SINE Alu -22 290 6 2267 93 0 0 chr3 212017642 212017921 -15506657 - AluSg SINE Alu -31 279 1 1800 181 52 3 chr3 212018119 212018467 -15506111 - MLT1A1 LTR MaLR 0 365 1 1484 152 0 126 chr3 212018614 212018956 -15505622 + AluJb SINE Alu 2 300 -2 218 298 0 60 chr3 212019052 212019136 -15505442 + L3 LINE CR1 1496 1574 -3 1800 169 0 7 chr3 212019275 212019565 -15505013 - AluJb SINE Alu -22 290 3 1159 139 0 0 chr3 212019601 212019759 -15504819 + AluSp SINE Alu 134 291 -22 1496 196 29 4 chr3 212019966 212020241 -15504337 - AluJb SINE Alu -30 282 1 300 263 123 35 chr3 212020393 212020507 -15504071 - L2 LINE L2 0 3272 3149 298 326 106 30 chr3 212020654 212020890 -15503688 - MIR SINE MIR -1 261 8 2341 77 10 16 chr3 212020954 212021266 -15503312 - AluSg SINE Alu 0 310 1 1896 188 76 38 chr3 212021816 212022209 -15502369 + MER45B DNA AcHobo 242 649 -391 375 137 0 8 chr3 212022237 212022305 -15502273 + FLAM_A SINE Alu 75 133 0 2168 115 0 10 chr3 212022305 212022600 -15501978 + AluSx SINE Alu 1 292 -20 869 188 81 0 chr3 212022605 212022765 -15501813 + FAM SINE Alu 1 173 -2 1361 161 91 30 chr3 212022766 212022913 -15501665 + MER45B DNA AcHobo 634 771 -810 2283 113 0 0 chr3 212022913 212023215 -15501363 + AluSg SINE Alu 1 302 -8 1361 161 91 30 chr3 212023215 212023365 -15501213 + MER45B DNA AcHobo 771 949 -91 213 296 0 45 chr3 212023782 212023870 -15500708 - L2 LINE L2 -2 3270 3187 1855 173 17 3 chr3 212023967 212024268 -15500310 - AluJb SINE Alu -7 305 1 313 183 17 0 chr3 212024302 212024362 -15500216 + L2 LINE L2 3206 3266 -6 510 296 126 10 chr3 212024848 212025054 -15499524 + MIR SINE MIR 21 250 -12 713 190 161 32 chr3 212026359 212026638 -15497940 - L1MC5 LINE L1 -44 7917 7603 1309 173 12 20 chr3 212026881 212027130 -15497448 - L1MB7 LINE L1 -9 6175 5929 1560 119 5 5 chr3 212027453 212027671 -15496907 - AluSq SINE Alu -95 218 1 1006 128 0 0 chr3 212027675 212027808 -15496770 - AluSq/x SINE Alu -179 133 1 369 165 11 11 chr3 212028521 212028612 -15495966 - L1 LINE L1 -2951 3195 3105 * 853 159 50 20 chr3 212028593 212028774 -15495804 - L1M4 LINE L1 -2260 3886 3705 388 330 52 82 chr3 212029235 212029771 -15494807 + HAL1 LINE L1 828 1347 -1160 983 161 0 29 chr3 212029846 212030020 -15494558 + FRAM SINE Alu 1 162 -14 1230 123 0 3 chr3 212030022 212030347 -15494231 + (GGA)n Simple_repeat Simple_repeat 2 325 0 195 349 101 0 chr3 212030565 212030714 -15493864 - L3b LINE CR1 -318 1265 1102 189 192 58 58 chr3 212030793 212030845 -15493733 + MIR SINE MIR 20 71 -137 702 254 61 0 chr3 212031323 212031504 -15493074 - L1ME LINE L1 -451 5670 5479 430 310 20 96 chr3 212031653 212031998 -15492580 - L2 LINE L2 -9 3263 2945 312 327 52 20 chr3 212033556 212033709 -15490869 + MER117 DNA MER1_type 29 186 -11 327 272 59 29 chr3 212033735 212033871 -15490707 - MIR3 SINE MIR -64 144 5 2484 189 51 6 chr3 212033995 212034450 -15490128 + MER6 DNA MER2_type 1 479 -386 2011 79 105 0 chr3 212034450 212034717 -15489861 - AluSp SINE Alu -18 295 1 2484 189 51 6 chr3 212034717 212034732 -15489846 + MER6 DNA MER2_type 479 492 -373 492 174 0 0 chr3 212035111 212035203 -15489375 + GA-rich Low_complexity Low_complexity 3 94 0 312 286 51 70 chr3 212035211 212035262 -15489316 + HAL1b LINE L1 444 494 -854 2197 113 0 0 chr3 212035262 212035544 -15489034 + AluSx SINE Alu 1 282 -30 732 43 0 0 chr3 212035544 212035636 -15488942 + (TAGA)n Simple_repeat Simple_repeat 1 92 0 312 286 51 70 chr3 212035636 212035898 -15488680 + HAL1b LINE L1 492 752 -596 2192 88 17 20 chr3 212035929 212036246 -15488332 + AluSx SINE Alu 1 312 0 230 203 0 63 chr3 212037117 212037196 -15487382 + GA-rich Low_complexity Low_complexity 4 77 0 2501 88 7 0 chr3 212037328 212037636 -15486942 - AluSg SINE Alu 0 310 1 25 51 0 0 chr3 212038544 212038583 -15485995 + AT_rich Low_complexity Low_complexity 1 39 0 2026 131 24 0 chr3 212038836 212039133 -15485445 - AluSx SINE Alu -6 306 3 2248 96 10 0 chr3 212039155 212039457 -15485121 - AluSp SINE Alu -8 305 1 2146 65 0 18 chr3 212039594 212039870 -15484708 + AluY SINE Alu 35 305 -6 493 112 290 47 chr3 212040229 212040336 -15484242 - FLAM_C SINE Alu 0 133 1 199 73 73 0 chr3 212041473 212041514 -15483064 + C-rich Low_complexity Low_complexity 4 47 0 2034 128 0 10 chr3 212041974 212042278 -15482300 - AluSg SINE Alu 0 310 10 258 257 133 0 chr3 212042744 212042849 -15481729 - MIR SINE MIR -67 195 77 1100 194 30 21 chr3 212043430 212043667 -15480911 - AluJo SINE Alu -9 303 65 1896 103 23 27 chr3 212043854 212044155 -15480423 - AluSq SINE Alu -1 312 13 23 54 0 0 chr3 212095856 212095893 -15428685 + AT_rich Low_complexity Low_complexity 1 37 0 384 22 0 0 chr3 212096804 212096849 -15427729 + (CA)n Simple_repeat Simple_repeat 2 46 0 21 0 0 0 chr3 212098567 212098588 -15425990 + AT_rich Low_complexity Low_complexity 1 21 0 40 37 0 0 chr3 212100339 212100393 -15424185 + GC_rich Low_complexity Low_complexity 1 54 0 31 99 0 0 chr3 212101245 212101346 -15423232 + GC_rich Low_complexity Low_complexity 1 101 0 349 238 21 35 chr3 212101562 212101705 -15422873 + C-rich Low_complexity Low_complexity 4 144 0 24 0 0 0 chr3 212101762 212101786 -15422792 + GC_rich Low_complexity Low_complexity 1 24 0 260 268 29 22 chr3 212102072 212102210 -15422368 + G-rich Low_complexity Low_complexity 4 142 0 280 244 114 23 chr3 212103424 212103555 -15421023 + MIR SINE MIR 44 186 -76 198 0 0 0 chr3 212104113 212104135 -15420443 + (TTG)n Simple_repeat Simple_repeat 3 24 0 2444 130 11 3 chr3 212104220 212104581 -15419997 - THE1B LTR MaLR 0 364 1 184 263 26 0 chr3 212105210 212105248 -15419330 - MIR SINE MIR -62 146 108 1412 169 32 0 chr3 212105337 212105585 -15418993 - AluJo SINE Alu 0 312 57 2037 138 43 12 chr3 212105803 212106130 -15418448 - MER1B DNA MER1_type 0 337 1 266 216 0 0 chr3 212106168 212106219 -15418359 + MIR SINE MIR 90 140 -68 466 143 44 0 chr3 212106429 212106520 -15418058 + L1MB8 LINE L1 6069 6163 -15 638 298 60 63 chr3 212106763 212107065 -15417513 - L2 LINE L2 -45 3227 2927 1435 243 189 40 chr3 212107137 212107895 -15416683 + HAL1 LINE L1 1284 2154 -353 416 261 123 46 chr3 212107900 212108047 -15416531 + L1ME LINE L1 5258 5392 -778 1521 188 0 28 chr3 212108047 212108335 -15416243 + AluJo SINE Alu 1 280 -32 416 261 123 46 chr3 212108335 212108513 -15416065 + L1ME LINE L1 5392 5608 -562 632 276 131 0 chr3 212108540 212108739 -15415839 + L2 LINE L2 1302 1526 -1788 316 254 200 9 chr3 212108800 212108910 -15415668 + L1ME LINE L1 5678 5808 -362 1166 220 4 11 chr3 212109107 212109380 -15415198 - AluJb SINE Alu -30 282 12 2197 115 0 0 chr3 212109562 212109875 -15414703 - AluSp SINE Alu 0 313 1 311 349 0 9 chr3 212109964 212110073 -15414505 - MER5A DNA MER1_type -21 168 61 281 183 17 0 chr3 212110157 212110217 -15414361 - L1MD3 LINE L1 -52 7943 7883 2367 80 3 0 chr3 212110289 212110601 -15413977 + AluSq SINE Alu 1 313 0 3307 236 126 99 chr3 212110611 212110718 -15413860 - L1MC4a LINE L1 -109 7699 7596 2693 16 0 0 chr3 212110718 212111022 -15413556 + AluYa5 SINE Alu 1 304 -7 3307 236 126 99 chr3 212111022 212111653 -15412925 - L1MC4a LINE L1 -212 7596 6983 636 76 109 0 chr3 212111653 212111745 -15412833 - AluSq/x SINE Alu -210 103 2 3307 236 126 99 chr3 212111745 212112110 -15412468 - L1MC4a LINE L1 -825 6983 6629 2078 110 3 29 chr3 212112110 212112419 -15412159 + AluSg1 SINE Alu 1 301 -8 3307 236 126 99 chr3 212112419 212112443 -15412135 - L1MC4a LINE L1 -1179 6629 6607 2077 92 0 27 chr3 212112443 212112767 -15411811 - AluSx SINE Alu 0 316 1 3307 236 126 99 chr3 212112767 212112945 -15411633 - L1MC4a LINE L1 -1201 6607 6435 2321 88 10 0 chr3 212112945 212113252 -15411326 - AluSg SINE Alu 0 310 1 3307 236 126 99 chr3 212113252 212113489 -15411089 - L1MC4a LINE L1 -1373 6435 6206 2328 77 0 6 chr3 212113489 212113801 -15410777 - AluY SINE Alu -1 310 1 3307 236 126 99 chr3 212113801 212115165 -15409413 - L1MC4a LINE L1 -1602 6206 4616 2217 72 39 24 chr3 212115174 212115343 -15409235 + L1PA13 LINE L1 5805 5970 -193 1884 128 20 10 chr3 212115343 212115648 -15408930 + AluSx SINE Alu 1 308 -4 2217 72 39 24 chr3 212115648 212115809 -15408769 + L1PA13 LINE L1 5970 6140 -23 430 168 28 28 chr3 212115825 212115932 -15408646 + HAL1 LINE L1 2269 2375 -132 1762 125 3 54 chr3 212115946 212116278 -15408300 - AluSg SINE Alu 0 317 1 281 254 0 0 chr3 212116320 212116379 -15408199 - LTR33 LTR ERVL 0 521 463 1145 0 0 0 chr3 212116401 212116490 -15408088 - MER2 DNA MER2_type -24 321 152 1349 209 20 17 chr3 212116490 212116791 -15407787 + AluJo SINE Alu 1 302 -10 1145 0 0 0 chr3 212116791 212116889 -15407689 - MER2 DNA MER2_type -193 152 248 1933 89 47 8 chr3 212116889 212116977 -15407601 + AluSx SINE Alu 35 118 -194 2278 108 3 3 chr3 212116977 212117284 -15407294 + AluSc SINE Alu 1 307 -2 1933 89 47 8 chr3 212117284 212117453 -15407125 + AluSx SINE Alu 118 302 -10 1145 0 0 0 chr3 212117453 212117583 -15406995 - MER2 DNA MER2_type -96 249 1 386 242 48 55 chr3 212117583 212117724 -15406854 - LTR33 LTR ERVL -80 441 302 580 320 86 5 chr3 212117764 212117986 -15406592 - LTR33 LTR ERVL -276 245 6 1986 135 34 0 chr3 212118055 212118352 -15406226 + AluSx SINE Alu 4 310 -2 337 237 178 0 chr3 212118725 212118860 -15405718 - MIR SINE MIR -27 235 77 1693 180 27 10 chr3 212118940 212119235 -15405343 + AluJb SINE Alu 1 300 -12 2413 84 3 0 chr3 212119432 212119730 -15404848 + AluSp SINE Alu 1 299 -14 532 247 46 40 chr3 212120367 212120494 -15404084 + MIR SINE MIR 65 195 -67 724 174 25 0 chr3 212120494 212120615 -15403963 + FLAM_C SINE Alu 5 128 -5 532 247 46 40 chr3 212120615 212120661 -15403917 + MIR SINE MIR 195 239 -23 424 286 96 20 chr3 212120792 212120991 -15403587 - L3 LINE CR1 -18 1559 1346 308 316 60 0 chr3 212120995 212121128 -15403450 - MIR3 SINE MIR -1 207 67 192 324 182 7 chr3 212121190 212121338 -15403240 - L3 LINE CR1 -376 1201 1028 2015 135 0 0 chr3 212121415 212121718 -15402860 + AluSq SINE Alu 1 303 0 2154 101 22 0 chr3 212122900 212123178 -15401400 + AluSq SINE Alu 1 284 -29 1031 40 0 0 chr3 212123511 212123635 -15400943 + L1PA3 LINE L1 6031 6154 -1 288 100 0 0 chr3 212123843 212123893 -15400685 - AluY SINE Alu -1 299 250 1900 46 0 5 chr3 212123893 212124112 -15400466 - AluY SINE Alu -93 218 1 1833 129 99 0 chr3 212125086 212125358 -15399220 - AluSg SINE Alu -11 299 1 1663 128 92 0 chr3 212125393 212125642 -15398936 - AluSc SINE Alu -37 272 1 2127 107 7 7 chr3 212126044 212126343 -15398235 + AluSx SINE Alu 1 299 -13 957 251 75 14 chr3 212126356 212126635 -15397943 + L1ME4a LINE L1 5533 5828 -293 2505 57 0 10 chr3 212126856 212127155 -15397423 - AluY SINE Alu -15 296 1 1733 83 13 22 chr3 212127252 212127481 -15397097 - AluSc SINE Alu -18 291 65 579 70 0 0 chr3 212127593 212127664 -15396914 - AluJ/FRAM SINE Alu -16 296 226 259 200 60 70 chr3 212127818 212127918 -15396660 - MIR SINE MIR -147 115 17 24 32 0 0 chr3 212127935 212127966 -15396612 + AT_rich Low_complexity Low_complexity 1 31 0 1683 159 36 42 chr3 212127968 212128109 -15396469 + AluJb SINE Alu 1 141 -171 2363 84 0 10 chr3 212128109 212128420 -15396158 + AluSg SINE Alu 1 308 -2 1683 159 36 42 chr3 212128420 212128587 -15395991 + AluJb SINE Alu 141 307 -5 249 140 0 20 chr3 212128718 212128768 -15395810 + MLT1H LTR MaLR 116 164 -385 2246 116 3 0 chr3 212129728 212130029 -15394549 - AluSg SINE Alu -8 302 1 2245 131 0 0 chr3 212130165 212130477 -15394101 - AluSx SINE Alu 0 312 1 1894 160 3 25 chr3 212130479 212130798 -15393780 - AluSx SINE Alu 0 312 1 2377 84 0 19 chr3 212130845 212131156 -15393422 + AluY SINE Alu 1 305 -6 2432 107 0 0 chr3 212131267 212131576 -15393002 + AluSx SINE Alu 1 309 -3 2288 113 3 0 chr3 212131576 212131875 -15392703 + AluSp SINE Alu 1 301 -12 2063 147 3 6 chr3 212131896 212132027 -15392551 + AluSx SINE Alu 1 131 -181 2488 77 0 0 chr3 212132027 212132326 -15392252 + AluY SINE Alu 1 299 -12 2063 147 3 6 chr3 212132326 212132507 -15392071 + AluSx SINE Alu 131 312 0 270 136 0 0 chr3 212132510 212132554 -15392024 + (GA)n Simple_repeat Simple_repeat 1 44 0 21 36 0 0 chr3 212132621 212132649 -15391929 + AT_rich Low_complexity Low_complexity 1 28 0 2305 261 110 58 chr3 212132709 212134098 -15390480 + L1ME LINE L1 20 1335 -4926 1760 136 16 0 chr3 212134098 212134355 -15390223 + AluSg SINE Alu 35 295 -15 1712 158 0 18 chr3 212134364 212134637 -15389941 + AluJb SINE Alu 14 281 -31 1999 141 3 7 chr3 212134637 212134933 -15389645 - AluSx SINE Alu -16 296 1 2305 261 110 58 chr3 212134933 212135188 -15389390 + L1ME LINE L1 1341 1820 -4441 872 194 6 0 chr3 212135221 212135381 -15389197 - FRAM SINE Alu -16 160 1 2122 129 10 0 chr3 212135411 212135713 -15388865 + AluSx SINE Alu 1 305 -7 233 250 211 7 chr3 212135713 212135865 -15388713 + L1ME LINE L1 1867 2049 -4212 461 313 52 58 chr3 212136030 212136359 -15388219 + L2 LINE L2 2945 3271 -1 2195 122 6 10 chr3 212136510 212136821 -15387757 + AluSx SINE Alu 1 310 -2 2376 195 19 23 chr3 212136835 212137324 -15387254 + L1PA16 LINE L1 4837 5325 -821 2199 125 3 7 chr3 212137324 212137629 -15386949 + AluSx SINE Alu 1 304 -8 2376 195 19 23 chr3 212137629 212137668 -15386910 + L1PA16 LINE L1 5325 5363 -783 1023 208 35 5 chr3 212137673 212137870 -15386708 + AluJo SINE Alu 3 205 -107 4817 119 8 64 chr3 212137886 212137932 -15386646 + L1PA16 LINE L1 5352 5399 -767 2058 150 3 0 chr3 212137932 212138239 -15386339 + AluSx SINE Alu 1 308 -4 4817 119 8 64 chr3 212138239 212138517 -15386061 + L1PA16 LINE L1 5399 5691 -475 2277 97 3 0 chr3 212138517 212138805 -15385773 + AluSq SINE Alu 1 289 -24 4817 119 8 64 chr3 212138805 212138918 -15385660 + L1PA16 LINE L1 5691 5809 -357 2390 100 0 0 chr3 212138918 212139227 -15385351 - AluSq SINE Alu -2 311 3 4817 119 8 64 chr3 212139227 212139642 -15384936 + L1PA16 LINE L1 5809 6158 -8 346 108 14 40 chr3 212139830 212139904 -15384674 + L1MA9 LINE L1 6240 6311 -1 2212 123 0 3 chr3 212140119 212140428 -15384150 + AluSx SINE Alu 1 308 -4 1999 139 17 0 chr3 212140466 212140753 -15383825 + AluSx SINE Alu 1 292 -20 2153 123 0 3 chr3 212140755 212141069 -15383509 + AluSx SINE Alu 1 313 0 1199 154 0 85 chr3 212141083 212141145 -15383433 + AluJo SINE Alu 84 150 -162 2311 103 3 0 chr3 212141145 212141446 -15383132 + AluSg SINE Alu 1 302 -8 1199 154 0 85 chr3 212141446 212141629 -15382949 + AluJo SINE Alu 150 308 -4 224 130 22 0 chr3 212141725 212141771 -15382807 + (TA)n Simple_repeat Simple_repeat 2 48 0 1375 229 108 48 chr3 212141771 212142225 -15382353 - MLT2B1 LTR ERVL -39 481 1 25 31 0 0 chr3 212142467 212142499 -15382079 + AT_rich Low_complexity Low_complexity 1 32 0 1266 255 74 48 chr3 212142628 212142658 -15381920 - LTR16C LTR ERVL -14 477 449 2268 105 3 0 chr3 212142658 212142953 -15381625 - AluSx SINE Alu -16 296 1 1266 255 74 48 chr3 212142953 212143381 -15381197 - LTR16C LTR ERVL -42 449 7 214 309 209 0 chr3 212143421 212143531 -15381047 - MIR SINE MIR -67 195 63 455 303 101 29 chr3 212143889 212144215 -15380363 + L2 LINE L2 2702 3049 -223 2090 129 14 0 chr3 212144369 212144663 -15379915 - AluSx SINE Alu -14 298 1 1079 105 0 0 chr3 212144676 212144809 -15379769 - AluSq/x SINE Alu -179 133 1 22 0 0 0 chr3 212144818 212144840 -15379738 + AT_rich Low_complexity Low_complexity 1 22 0 201 355 57 16 chr3 212145200 212145324 -15379254 - MIR SINE MIR -114 148 20 202 264 0 19 chr3 212145358 212145411 -15379167 + L2 LINE L2 3232 3283 -30 2421 89 0 3 chr3 212145794 212146098 -15378480 + AluSg SINE Alu 1 303 -7 407 306 9 9 chr3 212146102 212146213 -15378365 + L2 LINE L2 3161 3271 -1 1189 233 198 30 chr3 212146289 212146753 -15377825 + MLT1G LTR MaLR 49 590 0 184 29 29 29 chr3 212146798 212146832 -15377746 + (TTTA)n Simple_repeat Simple_repeat 3 36 0 2345 87 0 3 chr3 212146842 212147131 -15377447 - AluSp SINE Alu -25 288 1 2352 65 3 62 chr3 212147411 212147733 -15376845 + AluSc SINE Alu 1 303 -6 457 185 0 104 chr3 212147822 212147957 -15376621 - MER112 DNA MER1_type -7 253 133 1573 175 14 38 chr3 212148219 212148321 -15376257 + AluJb SINE Alu 16 119 -193 2359 92 0 13 chr3 212148321 212148635 -15375943 + AluSx SINE Alu 1 310 -2 1573 175 14 38 chr3 212148635 212148824 -15375754 + AluJb SINE Alu 119 300 -12 28 61 0 0 chr3 212148886 212148935 -15375643 + AT_rich Low_complexity Low_complexity 1 49 0 2290 90 0 32 chr3 212149133 212149445 -15375133 - AluSx SINE Alu -10 302 1 2272 106 3 0 chr3 212149445 212149737 -15374841 - AluSq SINE Alu -19 294 1 1291 238 11 4 chr3 212149962 212150243 -15374335 + ERVL LTR ERVL 5151 5433 -331 2291 109 0 0 chr3 212150310 212150604 -15373974 - AluSx SINE Alu -18 294 1 1088 210 148 95 chr3 212150722 212151303 -15373275 - LTR9 LTR ERV1 0 612 1 2256 108 3 3 chr3 212151554 212151849 -15372729 + AluSq SINE Alu 1 295 -18 305 235 0 0 chr3 212151923 212151991 -15372587 + L1MC4 LINE L1 6636 6703 -1339 2231 124 3 0 chr3 212151992 212152298 -15372280 - AluSx SINE Alu -5 307 1 606 155 138 17 chr3 212152695 212152811 -15371767 + AluJo SINE Alu 6 135 -177 1797 175 3 22 chr3 212152811 212153126 -15371452 + AluJb SINE Alu 1 309 -3 392 211 40 150 chr3 212153240 212153359 -15371219 - L1MC4a LINE L1 -1894 5914 5830 2204 101 23 10 chr3 212153359 212153667 -15370911 - AluSx SINE Alu 0 312 1 392 211 40 150 chr3 212153667 212153774 -15370804 - L1MC4a LINE L1 -1978 5830 5713 2225 118 0 0 chr3 212153913 212154210 -15370368 - AluSx SINE Alu -15 297 1 584 132 0 91 chr3 212154210 212154331 -15370247 - FLAM_C SINE Alu -5 138 29 2295 114 0 7 chr3 212154444 212154752 -15369826 - AluSx SINE Alu -5 307 2 2107 116 24 0 chr3 212154761 212155054 -15369524 - AluSq SINE Alu -13 300 1 2243 123 0 0 chr3 212155058 212155359 -15369219 - AluSx SINE Alu -11 301 1 1972 132 0 46 chr3 212155913 212156239 -15368339 + AluSx SINE Alu 1 311 -1 2356 96 0 0 chr3 212156242 212156543 -15368035 + AluSg1 SINE Alu 1 301 -8 346 341 96 23 chr3 212156607 212157137 -15367441 - L2 LINE L2 -661 2653 2085 616 147 32 0 chr3 212157364 212157459 -15367119 - Tigger7 DNA MER2_type 0 2587 2490 * 1259 185 14 91 chr3 212157458 212157621 -15366957 - Tigger7 DNA MER2_type -284 266 133 2335 86 7 7 chr3 212157621 212157924 -15366654 + AluSx SINE Alu 1 303 -9 1259 185 14 91 chr3 212157924 212158047 -15366531 - Tigger7 DNA MER2_type -417 133 2 570 195 70 8 chr3 212158047 212158165 -15366413 + MER74B LTR ERVL 57 182 -440 2454 86 3 0 chr3 212159217 212159521 -15365057 + AluSx SINE Alu 1 305 -7 1004 259 72 27 chr3 212159706 212159872 -15364706 + L1ME LINE L1 5283 5440 -722 1535 158 117 4 chr3 212159872 212160138 -15364440 - AluJb SINE Alu -16 296 1 1004 259 72 27 chr3 212160138 212160484 -15364094 + L1ME LINE L1 5440 5818 -344 2058 111 7 27 chr3 212160513 212160811 -15363767 + AluSx SINE Alu 1 292 -20 2320 79 4 0 chr3 212160813 212161123 -15363455 + AluSg SINE Alu 1 311 0 208 289 48 39 chr3 212161375 212161479 -15363099 + L2 LINE L2 3209 3313 0 245 89 22 22 chr3 212161653 212161698 -15362880 + L1 LINE L1 3930 3974 -2172 3847 172 33 50 chr3 212161701 212161785 -15362793 - L1MB7 LINE L1 -1 6183 6099 2409 84 0 10 chr3 212161785 212161920 -15362658 + AluSq SINE Alu 1 136 -177 2281 88 24 0 chr3 212161920 212162214 -15362364 + AluSx SINE Alu 1 301 -11 2409 84 0 10 chr3 212162214 212162389 -15362189 + AluSq SINE Alu 136 308 -5 3847 172 33 50 chr3 212162389 212162718 -15361860 - L1MB7 LINE L1 -85 6099 5766 1951 107 0 11 chr3 212162718 212162989 -15361589 - AluSx SINE Alu 0 312 45 3847 172 33 50 chr3 212162989 212163187 -15361391 - L1MB7 LINE L1 -418 5766 5566 2179 127 10 3 chr3 212163187 212163495 -15361083 + AluSg SINE Alu 1 310 0 2266 90 0 0 chr3 212163505 212163810 -15360768 + AluSg SINE Alu 1 305 0 3847 172 33 50 chr3 212163810 212164219 -15360359 - L1MB7 LINE L1 -627 5557 5173 2160 123 3 3 chr3 212164569 212164871 -15359707 - AluSx SINE Alu -10 302 1 758 292 45 12 chr3 212165065 212165308 -15359270 - MLT1G LTR MaLR 0 590 340 2061 107 41 3 chr3 212165414 212165704 -15358874 + AluSg SINE Alu 1 301 -9 2343 227 120 34 chr3 212165705 212165738 -15358840 + L1ME3 LINE L1 5360 5389 -773 2128 130 7 0 chr3 212165738 212166038 -15358540 + AluSx SINE Alu 1 302 -10 2343 227 120 34 chr3 212166038 212166399 -15358179 + L1ME3 LINE L1 5389 5718 -444 2299 96 7 0 chr3 212166399 212166701 -15357877 + AluSx SINE Alu 1 304 -8 2343 227 120 34 chr3 212166701 212166847 -15357731 + L1ME3 LINE L1 5718 5850 -312 2147 126 7 7 chr3 212166847 212167157 -15357421 + AluSx SINE Alu 1 310 -2 2145 125 3 0 chr3 212167160 212167456 -15357122 + AluSx SINE Alu 9 305 -7 2343 227 120 34 chr3 212167456 212167663 -15356915 + L1ME3 LINE L1 5851 6160 -2 712 242 143 14 chr3 212168787 212169080 -15355498 - L1ME4a LINE L1 -210 5980 5650 180 265 15 29 chr3 212169301 212169369 -15355209 + MIR SINE MIR 110 176 -86 1467 108 196 8 chr3 212169461 212169553 -15355025 + AluSx SINE Alu 1 74 -238 198 0 0 0 chr3 212169553 212169575 -15355003 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 1467 108 196 8 chr3 212169575 212169732 -15354846 + AluSx SINE Alu 74 297 -15 2269 86 0 3 chr3 212169876 212170168 -15354410 + AluSx SINE Alu 1 291 -21 440 241 60 0 chr3 212170194 212170310 -15354268 - L1ME4a LINE L1 -1199 5016 4894 2248 101 0 0 chr3 212170310 212170597 -15353981 + AluSx SINE Alu 1 287 -25 36 0 0 0 chr3 212170597 212170633 -15353945 + AT_rich Low_complexity Low_complexity 1 36 0 2183 107 0 0 chr3 212170642 212170923 -15353655 + AluSx SINE Alu 1 281 -31 284 0 0 27 chr3 212170926 212170963 -15353615 + (TAAA)n Simple_repeat Simple_repeat 2 37 0 1629 88 0 5 chr3 212170965 212171170 -15353408 + AluSp SINE Alu 85 288 -25 207 0 0 0 chr3 212171170 212171193 -15353385 + (CAAT)n Simple_repeat Simple_repeat 2 24 0 2159 246 93 28 chr3 212171193 212171841 -15352737 - L1ME4a LINE L1 -1951 4264 3659 2370 46 4 0 chr3 212171841 212172156 -15352422 - AluY SINE Alu 0 316 1 2159 246 93 28 chr3 212172156 212172194 -15352384 - L1ME4a LINE L1 -2556 3659 3625 204 0 83 0 chr3 212172194 212172230 -15352348 + T-rich Low_complexity Low_complexity 2 40 0 2139 113 0 0 chr3 212172239 212172514 -15352064 - AluSx SINE Alu -37 275 1 2159 246 93 28 chr3 212172514 212172604 -15351974 - L1ME4a LINE L1 -2597 3618 3535 1822 161 7 0 chr3 212172604 212172896 -15351682 - AluJb SINE Alu -18 294 1 2159 246 93 28 chr3 212172896 212172921 -15351657 - L1ME4a LINE L1 -2680 3535 3396 670 203 8 8 chr3 212172923 212173051 -15351527 - MER21-int LTR ERV1 -3008 1183 1056 1452 193 14 14 chr3 212173067 212173370 -15351208 - AluJo SINE Alu 0 305 3 2347 283 40 72 chr3 212173370 212173538 -15351040 - L1ME LINE L1 -4773 1623 1451 1620 159 29 64 chr3 212173538 212173852 -15350726 - AluJb SINE Alu 0 312 10 2347 283 40 72 chr3 212173852 212173873 -15350705 - L1ME LINE L1 -4945 1451 1431 257 68 23 0 chr3 212173873 212173917 -15350661 + (TTTG)n Simple_repeat Simple_repeat 1 45 0 2347 283 40 72 chr3 212173917 212174294 -15350284 - L1ME LINE L1 -4965 1431 1044 1660 173 0 56 chr3 212174294 212174617 -15349961 + AluJo SINE Alu 1 305 -7 2043 134 0 13 chr3 212174625 212174931 -15349647 + AluSx SINE Alu 1 302 -10 2347 283 40 72 chr3 212174931 212175994 -15348584 - L1ME LINE L1 -5359 1037 92 353 231 16 138 chr3 212176022 212176148 -15348430 + L1ME1 LINE L1 6029 6130 -32 2072 100 3 53 chr3 212176148 212176471 -15348107 - AluSx SINE Alu 0 308 1 353 231 16 138 chr3 212176471 212176497 -15348081 + L1ME1 LINE L1 6130 6158 -4 30 27 0 0 chr3 212176535 212176572 -15348006 + AT_rich Low_complexity Low_complexity 1 37 0 2291 94 10 0 chr3 212177324 212177632 -15346946 - AluSp SINE Alu -2 311 1 2067 118 3 0 chr3 212177665 212177985 -15346593 + AluSx SINE Alu 1 321 0 2371 98 0 9 chr3 212178377 212178693 -15345885 + AluSq SINE Alu 1 313 0 296 244 50 83 chr3 212178959 212179104 -15345474 - HAL1 LINE L1 -280 2227 2092 2113 142 0 0 chr3 212179104 212179414 -15345164 - AluSx SINE Alu -2 310 1 296 244 50 83 chr3 212179414 212179510 -15345068 - HAL1 LINE L1 -415 2092 1994 1183 201 112 115 chr3 212179584 212179633 -15344945 - HAL1 LINE L1 -789 1718 1670 2183 120 0 0 chr3 212179633 212179925 -15344653 - AluSc SINE Alu -17 292 1 2261 89 14 3 chr3 212179933 212180225 -15344353 - AluSp SINE Alu -16 297 3 1183 201 112 115 chr3 212180225 212180324 -15344254 - HAL1 LINE L1 -844 1663 1565 1601 144 7 57 chr3 212180324 212180652 -15343926 + AluJo SINE Alu 1 313 0 1183 201 112 115 chr3 212180652 212181123 -15343455 - HAL1 LINE L1 -942 1565 1094 1900 157 13 7 chr3 212181123 212181428 -15343150 - AluJb SINE Alu -5 307 1 1816 173 3 3 chr3 212181435 212181735 -15342843 - AluJb SINE Alu -12 300 1 1183 201 112 115 chr3 212181735 212181780 -15342798 - HAL1 LINE L1 -1419 1088 1036 2215 114 7 3 chr3 212181782 212182089 -15342489 - AluSx SINE Alu -4 308 1 226 156 0 0 chr3 212182090 212182135 -15342443 - HAL1 LINE L1 -1427 1080 1036 240 35 0 0 chr3 212182137 212182166 -15342412 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2112 119 0 3 chr3 212182169 212182455 -15342123 - AluSg SINE Alu -25 285 1 2825 205 72 77 chr3 212182465 212182951 -15341627 - L1ME3 LINE L1 -1 6161 5674 1792 172 0 33 chr3 212182951 212183110 -15341468 - AluSx SINE Alu -19 293 147 288 0 0 0 chr3 212183110 212183142 -15341436 + (TTA)n Simple_repeat Simple_repeat 1 32 0 1792 172 0 33 chr3 212183142 212183285 -15341293 - AluSx SINE Alu -165 147 1 2825 205 72 77 chr3 212183285 212183501 -15341077 - L1ME3 LINE L1 -488 5674 5461 1690 191 3 0 chr3 212183501 212183789 -15340789 + AluJb SINE Alu 1 289 -23 2825 205 72 77 chr3 212183789 212183943 -15340635 - L1ME3 LINE L1 -701 5461 5308 1534 181 103 31 chr3 212183944 212184303 -15340275 - MLT1F LTR MaLR 0 542 158 2320 103 3 0 chr3 212184303 212184604 -15339974 - AluSx SINE Alu -10 302 1 892 161 0 0 chr3 212184606 212184736 -15339842 - AluJo/FLAM SINE Alu -172 130 1 2693 180 42 35 chr3 212184774 212185153 -15339425 - L1MB8 LINE L1 -4 6174 5799 342 0 0 0 chr3 212185153 212185191 -15339387 + (TTTA)n Simple_repeat Simple_repeat 3 40 0 2289 68 0 0 chr3 212185191 212185472 -15339106 - AluY SINE Alu -30 281 1 2693 180 42 35 chr3 212185472 212185664 -15338914 - L1MB8 LINE L1 -378 5800 5598 2012 116 7 20 chr3 212185664 212185965 -15338613 - AluSx SINE Alu -7 305 9 184 395 49 0 chr3 212186292 212186454 -15338124 - MIR3 SINE MIR -6 202 33 5996 48 19 0 chr3 212186463 212187199 -15337379 - L1PA5 LINE L1 -3 6151 5402 263 231 110 44 chr3 212187310 212187401 -15337177 - L2 LINE L2 0 3272 3176 240 224 67 90 chr3 212187700 212187834 -15336744 - MIR SINE MIR 0 262 132 262 242 11 11 chr3 212188054 212188149 -15336429 - L1ME3 LINE L1 -938 5208 5114 * 377 299 30 61 chr3 212188144 212188275 -15336303 - HAL1 LINE L1 -1570 937 812 2242 87 20 0 chr3 212188275 212188573 -15336005 + AluY SINE Alu 1 304 -7 377 299 30 61 chr3 212188573 212188638 -15335940 - HAL1 LINE L1 -1695 812 747 1976 133 16 3 chr3 212188763 212189071 -15335507 + AluSx SINE Alu 1 312 0 22 35 0 0 chr3 212189150 212189179 -15335399 + AT_rich Low_complexity Low_complexity 1 29 0 2058 122 7 0 chr3 212189310 212189604 -15334974 + AluSg SINE Alu 1 296 -14 772 217 14 7 chr3 212189612 212189755 -15334823 + FRAM SINE Alu 21 164 -12 789 166 92 6 chr3 212190334 212190497 -15334081 - Tigger2a DNA MER2_type -257 177 1 2108 105 7 0 chr3 212190719 212190996 -15333582 + AluSq SINE Alu 11 289 -24 261 0 0 0 chr3 212190997 212191026 -15333552 + (CA)n Simple_repeat Simple_repeat 1 29 0 665 155 52 9 chr3 212191705 212191821 -15332757 - Charlie3 DNA MER1_type -2450 260 140 280 279 39 58 chr3 212192916 212193020 -15331558 + MIR SINE MIR 10 111 -151 229 171 49 0 chr3 212194809 212194850 -15329728 + MER57A LTR ERV1 295 337 -66 1589 142 131 11 chr3 212195407 212195674 -15328904 + AluSx SINE Alu 1 299 -3 201 39 0 0 chr3 212196153 212196179 -15328399 + (TCC)n Simple_repeat Simple_repeat 2 27 0 249 186 206 72 chr3 212197039 212197136 -15327442 - AluJ SINE Alu -9 293 184 450 156 78 0 chr3 212197136 212197213 -15327365 - AluJ SINE Alu -186 126 44 1612 133 111 0 chr3 212197239 212197510 -15327068 - AluSx SINE Alu -11 301 1 2155 120 0 0 chr3 212198164 212198465 -15326113 + AluY SINE Alu 1 301 -10 828 264 164 11 chr3 212199070 212199339 -15325239 + MER58B DNA MER1_type 7 316 -25 2045 75 25 14 chr3 212199679 212199958 -15324620 + AluSp SINE Alu 1 282 -31 1671 152 14 17 chr3 212201210 212201500 -15323078 + AluJb SINE Alu 1 289 -23 380 217 96 17 chr3 212202735 212202850 -15321728 + MER94 DNA DNA 1 124 -10 274 234 162 42 chr3 212202950 212203117 -15321461 - MIR SINE MIR -30 232 46 24 32 0 0 chr3 212203821 212203852 -15320726 + AT_rich Low_complexity Low_complexity 1 31 0 21 36 0 0 chr3 212210003 212210031 -15314547 + AT_rich Low_complexity Low_complexity 1 28 0 2560 56 3 3 chr3 212215175 212215481 -15309097 + AluY SINE Alu 1 306 -5 2421 75 0 7 chr3 212215490 212215798 -15308780 + AluSg SINE Alu 1 306 -4 1902 132 24 3 chr3 212216014 212216309 -15308269 - AluSx SINE Alu -11 301 1 600 83 165 37 chr3 212216412 212216521 -15308057 - AluJb SINE Alu -12 300 178 4304 172 46 42 chr3 212216540 212217252 -15307326 - L1MB8 LINE L1 0 6178 5461 2279 87 14 0 chr3 212217252 212217539 -15307039 + AluSp SINE Alu 1 291 -22 4304 172 46 42 chr3 212217539 212217726 -15306852 - L1MB8 LINE L1 -717 5461 5276 36 40 0 0 chr3 212218001 212218051 -15306527 + AT_rich Low_complexity Low_complexity 1 50 0 2398 71 3 0 chr3 212218060 212218357 -15306221 - AluY SINE Alu -13 298 1 453 268 89 57 chr3 212218360 212218517 -15306061 + L2 LINE L2 3110 3271 -1 2207 117 0 0 chr3 212218893 212219202 -15305376 + AluSx SINE Alu 1 309 -3 181 0 33 33 chr3 212219427 212219457 -15305121 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 220 304 43 0 chr3 212219770 212219839 -15304739 + MER91A DNA MER1_type 122 193 -3 1656 175 54 180 chr3 212219973 212220819 -15303759 + LTR41 LTR ERVL 30 769 -4 339 293 47 33 chr3 212220987 212221137 -15303441 - L2 LINE L2 -998 2316 2165 1793 113 0 4 chr3 212221380 212221637 -15302941 + AluSq SINE Alu 55 310 -3 2387 63 0 0 chr3 212221645 212221945 -15302633 + AluY SINE Alu 1 300 -11 2212 76 7 0 chr3 212222272 212222590 -15301988 - AluY SINE Alu 0 311 1 789 158 0 27 chr3 212222641 212222787 -15301791 - FLAM_C SINE Alu -1 142 1 480 264 13 32 chr3 212222810 212222965 -15301613 - L1MC4a LINE L1 -1911 5897 5746 293 282 73 16 chr3 212222965 212223089 -15301489 - L2 LINE L2 -298 3015 2885 744 241 42 23 chr3 212223123 212223348 -15301230 + MIR SINE MIR 5 237 -25 872 279 133 47 chr3 212223361 212223406 -15301172 - L2 LINE L2 -515 2799 2759 2015 107 0 21 chr3 212223406 212223720 -15300858 + AluSx SINE Alu 1 308 0 872 279 133 47 chr3 212223720 212224208 -15300370 - L2 LINE L2 -555 2759 2219 718 265 139 33 chr3 212224356 212224745 -15299833 - L1ME LINE L1 -306 5815 5386 214 326 80 57 chr3 212224786 212225087 -15299491 + L2 LINE L2 2944 3251 -62 735 157 8 30 chr3 212225759 212225893 -15298685 + AluJb SINE Alu 2 132 -180 2367 83 0 0 chr3 212225893 212226194 -15298384 + AluSx SINE Alu 1 301 -11 3550 60 0 7 chr3 212226489 212226940 -15297638 + LTR7 LTR ERV1 1 448 -2 2192 58 0 10 chr3 212227007 212227300 -15297278 - AluY SINE Alu -21 290 1 337 265 95 39 chr3 212227337 212227608 -15296970 - L1ME LINE L1 -1160 4986 4704 1039 214 62 83 chr3 212227618 212227992 -15296586 + MLT2C1 LTR ERVL 13 378 -19 1987 141 70 80 chr3 212228123 212228474 -15296104 - L1MA4 LINE L1 0 6300 5911 533 182 0 0 chr3 212228474 212228562 -15296016 - AluSg/x SINE Alu -20 292 205 1987 141 70 80 chr3 212228562 212228736 -15295842 - L1MA4 LINE L1 -389 5911 5737 1622 158 10 30 chr3 212228773 212228903 -15295675 - AluJb SINE Alu -14 298 167 3624 184 76 36 chr3 212228903 212229344 -15295234 + LTR1B LTR ERV1 1 489 -337 2048 107 0 0 chr3 212229344 212229653 -15294925 + AluSx SINE Alu 1 309 0 3624 184 76 36 chr3 212229653 212230004 -15294574 + LTR1B LTR ERV1 489 825 -1 1622 158 10 30 chr3 212230004 212230177 -15294401 - AluJb SINE Alu -145 167 1 663 184 106 60 chr3 212230332 212230550 -15294028 - MIR SINE MIR -31 231 4 2611 26 0 0 chr3 212230692 212230994 -15293584 - AluY SINE Alu -9 302 1 1572 257 55 11 chr3 212231304 212231774 -15292804 - L1ME3A LINE L1 -5 6165 5675 212 244 0 0 chr3 212231925 212231966 -15292612 + (TG)n Simple_repeat Simple_repeat 2 42 0 564 268 24 40 chr3 212231990 212232028 -15292550 - L1ME4a LINE L1 -201 5920 5883 3346 152 11 59 chr3 212232028 212232671 -15291907 - LTR9 LTR ERV1 0 612 1 564 268 24 40 chr3 212232671 212232882 -15291696 - L1ME4a LINE L1 -238 5883 5675 2327 70 0 3 chr3 212233435 212233736 -15290842 - AluY SINE Alu -11 300 1 223 324 129 14 chr3 212233835 212233872 -15290706 + L2 LINE L2 1671 1702 -1612 1910 141 3 0 chr3 212233872 212234162 -15290416 + AluSx SINE Alu 1 291 -21 223 324 129 14 chr3 212234162 212234263 -15290315 + L2 LINE L2 1702 1825 -1489 258 278 176 43 chr3 212234271 212234470 -15290108 + L2 LINE L2 2330 2501 -813 1535 162 20 146 chr3 212234470 212234818 -15289760 - MLT1B LTR MaLR 0 390 108 2182 108 0 3 chr3 212234818 212235123 -15289455 + AluSx SINE Alu 1 304 -8 1535 162 20 146 chr3 212235123 212235219 -15289359 - MLT1B LTR MaLR -282 108 2 258 278 176 43 chr3 212235219 212235343 -15289235 + L2 LINE L2 2501 2696 -618 245 316 0 26 chr3 212235734 212235810 -15288768 + L2 LINE L2 3240 3313 0 2034 112 4 0 chr3 212235853 212236130 -15288448 + AluSp SINE Alu 3 280 -33 279 0 0 0 chr3 212236133 212236164 -15288414 + (GAAA)n Simple_repeat Simple_repeat 2 32 0 1999 117 0 66 chr3 212236175 212236509 -15288069 + AluSq SINE Alu 1 312 -1 265 284 54 14 chr3 212237165 212237239 -15287339 + L2 LINE L2 2643 2719 -595 757 271 81 35 chr3 212237241 212237551 -15287027 + L2 LINE L2 2653 2976 -338 2087 140 49 22 chr3 212237557 212237692 -15286886 + THE1C LTR MaLR 1 131 -244 4952 141 50 9 chr3 212237692 212238485 -15286093 - LTR1B LTR ERV1 0 826 1 2087 140 49 22 chr3 212238485 212238714 -15285864 + THE1C LTR MaLR 131 375 0 414 260 221 0 chr3 212238716 212238920 -15285658 + L2 LINE L2 2980 3228 -85 781 157 22 22 chr3 212239125 212239259 -15285319 - FAM SINE Alu -31 154 21 1576 244 69 20 chr3 212239275 212239722 -15284856 - L2 LINE L2 -562 2752 2284 2184 52 39 33 chr3 212240210 212240515 -15284063 + AluY SINE Alu 1 307 -4 1015 188 72 61 chr3 212240591 212240682 -15283896 + LTR37A LTR ERV1 78 166 -260 2260 103 0 0 chr3 212240682 212240984 -15283594 + AluSg SINE Alu 1 302 -8 1015 188 72 61 chr3 212240984 212241237 -15283341 + LTR37A LTR ERV1 166 426 0 2392 99 0 0 chr3 212341799 212342102 -15182476 + AluSg SINE Alu 1 303 -7 491 289 106 5 chr3 212342106 212342314 -15182264 - MIR SINE MIR -12 250 22 2283 109 3 6 chr3 212342314 212342625 -15181953 + AluSx SINE Alu 1 310 -2 297 65 0 0 chr3 212342877 212342923 -15181655 + Alu SINE Alu 254 299 -1 281 267 108 10 chr3 212342923 212343062 -15181516 + L1MC4 LINE L1 7808 8023 -19 2343 85 0 0 chr3 212343576 212343895 -15180683 - AluY SINE Alu 0 319 1 188 221 284 32 chr3 212344539 212344634 -15179944 + MIR SINE MIR 28 146 -116 204 365 0 0 chr3 212345271 212345334 -15179244 - L2 LINE L2 0 3272 3210 307 323 60 18 chr3 212348295 212348462 -15176116 - L3 LINE CR1 -141 1436 1263 1964 133 14 0 chr3 212348625 212348904 -15175674 + AluSq SINE Alu 1 283 -30 207 191 44 44 chr3 212348984 212349052 -15175526 + L3b LINE CR1 1266 1333 -250 306 320 20 0 chr3 212349258 212349358 -15175220 + L3b LINE CR1 1352 1453 -130 321 258 48 48 chr3 212350199 212350323 -15174255 + MIR SINE MIR 63 186 -76 235 290 0 0 chr3 212351541 212351603 -15172975 + MIR SINE MIR 89 150 -58 248 75 0 57 chr3 212351842 212351895 -15172683 + (TA)n Simple_repeat Simple_repeat 2 51 0 222 118 0 0 chr3 212351895 212351929 -15172649 + (CA)n Simple_repeat Simple_repeat 2 35 0 237 108 0 0 chr3 212352868 212352905 -15171673 + (TG)n Simple_repeat Simple_repeat 1 37 0 187 246 82 0 chr3 212353502 212353563 -15171015 + L2 LINE L2 3164 3229 -43 2294 96 0 3 chr3 212353693 212353986 -15170592 - AluSc SINE Alu -17 292 1 183 42 0 0 chr3 212353986 212354010 -15170568 + (T)n Simple_repeat Simple_repeat 1 24 0 1991 136 26 0 chr3 212354847 212355149 -15169429 + AluJb SINE Alu 1 310 -2 2378 102 0 6 chr3 212355385 212355699 -15168879 + AluSx SINE Alu 1 312 0 955 188 33 0 chr3 212355792 212355973 -15168605 + MER5A DNA MER1_type 1 187 -2 186 143 0 0 chr3 212356134 212356169 -15168409 + (TA)n Simple_repeat Simple_repeat 1 35 0 2265 109 0 10 chr3 212356204 212356516 -15168062 - AluSg SINE Alu -1 309 1 401 271 29 120 chr3 212356554 212357030 -15167548 - L1ME LINE L1 -376 5745 5313 240 300 12 0 chr3 212357469 212357549 -15167029 - L1ME LINE L1 -1333 4813 4733 764 286 136 74 chr3 212357654 212358685 -15165893 - L1ME LINE L1 -1618 4528 3434 2136 127 3 13 chr3 212358720 212359027 -15165551 - AluSx SINE Alu -8 304 1 30 27 0 0 chr3 212359060 212359097 -15165481 + AT_rich Low_complexity Low_complexity 1 37 0 631 313 62 44 chr3 212359177 212359628 -15164950 - L1ME LINE L1 -2981 3165 2707 2261 119 0 6 chr3 212360101 212360412 -15164166 + AluSx SINE Alu 1 309 -3 376 96 0 0 chr3 212360438 212360490 -15164088 + Charlie5 DNA MER1_type 2573 2624 0 275 296 72 46 chr3 212360979 212361131 -15163447 - MIR3 SINE MIR -23 185 30 2215 90 17 0 chr3 212361313 212361602 -15162976 + AluSc SINE Alu 2 295 -14 2039 112 14 3 chr3 212361730 212362016 -15162562 + AluSp SINE Alu 1 289 -24 1143 295 99 32 chr3 212362252 212362869 -15161709 + L3 LINE CR1 905 1562 -15 2255 112 0 0 chr3 212364165 212364461 -15160117 - AluSx SINE Alu -16 296 1 328 261 152 12 chr3 212364666 212364831 -15159747 - MER5A DNA MER1_type 0 189 2 216 247 41 27 chr3 212364876 212364949 -15159629 + MIR SINE MIR 69 142 -120 1794 81 4 0 chr3 212365019 212365253 -15159325 - L1PA8 LINE L1 -9 6163 5929 209 179 0 0 chr3 212365949 212365988 -15158590 + (TG)n Simple_repeat Simple_repeat 2 40 0 191 235 15 73 chr3 212367046 212367114 -15157464 + L3 LINE CR1 1512 1575 -2 2326 111 0 0 chr3 212367843 212368149 -15156429 - AluSx SINE Alu -6 306 1 2241 110 0 25 chr3 212368162 212368480 -15156098 - AluSx SINE Alu -2 310 1 507 114 13 0 chr3 212369218 212369297 -15155281 - MADE1 DNA Mariner 0 80 1 2067 114 7 13 chr3 212371380 212371687 -15152891 + AluSq SINE Alu 1 305 -8 450 0 0 0 chr3 212372650 212372700 -15151878 + (CA)n Simple_repeat Simple_repeat 2 51 0 2211 113 0 0 chr3 212373769 212374071 -15150507 - AluSx SINE Alu -10 302 1 28 0 0 0 chr3 212375257 212375285 -15149293 + AT_rich Low_complexity Low_complexity 1 28 0 323 342 34 8 chr3 212380443 212380560 -15144018 - L2 LINE L2 0 3272 3153 563 241 21 68 chr3 212380630 212380821 -15143757 - MIR SINE MIR -55 207 26 436 300 159 21 chr3 212380892 212381125 -15143453 + L3 LINE CR1 1310 1574 -3 2111 124 0 3 chr3 212381999 212382298 -15142280 + AluSx SINE Alu 1 298 -14 883 257 15 52 chr3 212382471 212382743 -15141835 - MIR SINE MIR 0 262 1 1030 222 43 8 chr3 212382783 212383017 -15141561 - MIR SINE MIR -20 242 1 434 302 36 42 chr3 212383220 212383412 -15141166 - MIR SINE MIR -11 251 61 2346 88 0 0 chr3 212383650 212383957 -15140621 + AluSx SINE Alu 1 307 -5 2146 198 13 57 chr3 212385477 212386002 -15138576 - L1ME3A LINE L1 0 6170 5669 25 0 0 0 chr3 212386243 212386268 -15138310 + AT_rich Low_complexity Low_complexity 1 25 0 2028 128 0 0 chr3 212386400 212386696 -15137882 - AluSx SINE Alu -16 296 1 285 317 62 37 chr3 212386954 212387115 -15137463 - L2 LINE L2 -210 3062 2898 1568 151 55 24 chr3 212387301 212387592 -15136986 + AluJb SINE Alu 1 300 -12 250 205 72 60 chr3 212387886 212387969 -15136609 + L2 LINE L2 3188 3271 -1 543 294 70 15 chr3 212389230 212389431 -15135147 + MIR SINE MIR 20 231 -31 416 312 47 6 chr3 212389456 212389626 -15134952 + MIR SINE MIR 73 249 -13 2323 54 0 32 chr3 212390119 212390432 -15134146 - AluY SINE Alu -8 303 1 224 293 12 0 chr3 212390869 212390951 -15133627 + (GGGTG)n Simple_repeat Simple_repeat 3 85 0 297 268 94 0 chr3 212391825 212391963 -15132615 - L1ME4a LINE L1 -5 6116 5966 443 296 58 18 chr3 212391975 212392201 -15132377 - L1ME4a LINE L1 -195 5926 5692 336 24 0 0 chr3 212392201 212392242 -15132336 + (TG)n Simple_repeat Simple_repeat 2 42 0 249 171 0 0 chr3 212392482 212392523 -15132055 - 5S rRNA rRNA -79 42 2 363 254 27 68 chr3 212392749 212392897 -15131681 + MIR SINE MIR 36 188 -62 198 0 0 0 chr3 212393152 212393174 -15131404 + (T)n Simple_repeat Simple_repeat 1 22 0 331 295 107 0 chr3 212394128 212394250 -15130328 - L2 LINE L2 0 3313 3179 194 151 55 0 chr3 212394415 212394488 -15130090 + (TG)n Simple_repeat Simple_repeat 2 78 0 347 243 105 33 chr3 212394620 212394801 -15129777 - HAL1b LINE L1 -619 729 536 1808 193 45 13 chr3 212394802 212395180 -15129398 + MLT1B LTR MaLR 1 390 0 350 241 103 9 chr3 212396014 212396130 -15128448 - L2 LINE L2 0 3313 3187 312 330 92 0 chr3 212396261 212396370 -15128208 + L3 LINE CR1 1351 1469 -108 320 261 76 34 chr3 212396406 212396525 -15128053 + L2 LINE L2 3149 3272 0 272 246 15 15 chr3 212396536 212396601 -15127977 + L3 LINE CR1 1512 1576 -1 449 266 27 71 chr3 212396834 212396943 -15127635 - MER5A DNA MER1_type -13 176 64 216 86 0 0 chr3 212396943 212396978 -15127600 + (TG)n Simple_repeat Simple_repeat 2 36 0 2229 84 0 3 chr3 212396978 212397265 -15127313 - AluSp SINE Alu -27 286 1 449 266 27 71 chr3 212397265 212397338 -15127240 - MER5A DNA MER1_type -123 66 1 2255 82 3 10 chr3 212397607 212397911 -15126667 - AluY SINE Alu -9 302 1 1689 150 4 7 chr3 212398093 212398373 -15126205 - AluJo SINE Alu -30 282 4 289 238 38 25 chr3 212399191 212399271 -15125307 - MER103 DNA DNA 0 166 86 225 0 0 0 chr3 212401697 212401722 -15122856 + (TG)n Simple_repeat Simple_repeat 2 26 0 192 179 0 0 chr3 212401736 212401775 -15122803 + GA-rich Low_complexity Low_complexity 2 40 0 402 21 0 0 chr3 212402830 212402877 -15121701 + (CTCA)n Simple_repeat Simple_repeat 1 47 0 230 344 151 61 chr3 212402877 212403188 -15121390 - L2 LINE L2 -17 3255 2917 2139 114 0 10 chr3 212403634 212403940 -15120638 + AluSx SINE Alu 1 303 -9 416 259 153 50 chr3 212404004 212404502 -15120076 + L1ME4a LINE L1 5567 6115 -6 736 224 11 17 chr3 212405177 212405356 -15119222 + MER5B DNA MER1_type 1 178 0 1174 148 6 0 chr3 212405389 212405572 -15119006 + MER5A DNA MER1_type 1 184 -5 233 297 108 0 chr3 212405676 212405787 -15118791 + MIR SINE MIR 134 256 -6 482 296 40 20 chr3 212406210 212406362 -15118216 + L2 LINE L2 3118 3272 0 185 0 0 39 chr3 212406419 212406445 -15118133 + (TAA)n Simple_repeat Simple_repeat 3 27 0 1723 189 36 9 chr3 212406449 212406783 -15117795 + MER2 DNA MER2_type 2 344 0 1789 138 31 7 chr3 212406925 212407214 -15117364 - AluSx SINE Alu -14 298 3 350 266 21 63 chr3 212407856 212407929 -15116649 + MIR SINE MIR 73 139 -123 1980 163 10 54 chr3 212407929 212408334 -15116244 - MLT1B LTR MaLR 0 390 4 350 266 21 63 chr3 212408334 212408403 -15116175 + MIR SINE MIR 139 209 -53 216 339 0 24 chr3 212409458 212409585 -15114993 + GA-rich Low_complexity Low_complexity 2 125 0 423 0 0 0 chr3 212409722 212409769 -15114809 + (TG)n Simple_repeat Simple_repeat 2 48 0 320 313 76 8 chr3 212410122 212410253 -15114325 + MIR3 SINE MIR 46 185 -23 698 218 35 6 chr3 212410753 212410923 -15113655 + L1P LINE L1 5078 5252 -894 301 305 64 28 chr3 212410927 212411068 -15113510 - MIR SINE MIR -71 191 46 399 289 137 37 chr3 212411678 212411868 -15112710 + MIR SINE MIR 49 257 -5 286 257 59 20 chr3 212412472 212412573 -15112005 - L2 LINE L2 0 3272 3168 360 299 61 54 chr3 212412757 212412904 -15111674 + MIR SINE MIR 51 198 -64 1570 201 59 20 chr3 212412941 212413299 -15111279 + MLT1A2 LTR MaLR 1 372 -2 325 275 75 25 chr3 212413900 212414020 -15110558 + MIR SINE MIR 17 142 -66 495 261 157 13 chr3 212414063 212414216 -15110362 - MER5A DNA MER1_type 0 189 15 1030 235 4 35 chr3 212414228 212414458 -15110120 + MER58A DNA MER1_type 1 223 -1 236 230 151 25 chr3 212414498 212414602 -15109976 + MIR SINE MIR 66 181 -27 310 345 69 14 chr3 212415038 212415183 -15109395 - L2 LINE L2 -3 3269 3117 253 288 197 23 chr3 212416230 212416362 -15108216 + L2 LINE L2 3113 3267 -5 2049 130 0 0 chr3 212416520 212416820 -15107758 + AluSq SINE Alu 1 300 -13 401 309 27 13 chr3 212417412 212417561 -15107017 - MIR SINE MIR -21 241 91 350 245 38 94 chr3 212418264 212418451 -15106127 + MIR SINE MIR 30 206 -54 200 295 64 13 chr3 212418600 212418678 -15105900 - L2 LINE L2 -53 3219 3138 2345 90 3 0 chr3 212418761 212419073 -15105505 - AluSp SINE Alu 0 313 1 469 254 186 11 chr3 212419205 212419382 -15105196 - MIR SINE MIR -18 244 37 1932 95 0 0 chr3 212419516 212419769 -15104809 - AluSx SINE Alu -59 253 1 664 284 22 16 chr3 212420063 212420246 -15104332 - MIR3 SINE MIR -22 186 3 2140 102 3 3 chr3 212420884 212421187 -15103391 + AluSx SINE Alu 1 303 -9 338 290 97 19 chr3 212421467 212421622 -15102956 + MER5B DNA MER1_type 1 167 -11 190 254 63 0 chr3 212421708 212421771 -15102807 - MIR3 SINE MIR -130 78 12 3446 254 93 7 chr3 212422022 212423024 -15101554 - L2 LINE L2 -348 2966 1879 219 69 0 0 chr3 212423512 212423541 -15101037 + (TG)n Simple_repeat Simple_repeat 2 30 0 2179 87 0 0 chr3 212423895 212424182 -15100396 - AluSg SINE Alu -23 287 1 410 279 59 7 chr3 212424487 212424623 -15099955 - MIR SINE MIR -100 162 20 451 319 18 0 chr3 212424852 212425018 -15099560 - L3 LINE CR1 -160 1417 1249 755 250 94 13 chr3 212425042 212425281 -15099297 - MIR SINE MIR -11 251 2 286 340 59 46 chr3 212425306 212425459 -15099119 - L3 LINE CR1 -378 1199 1045 542 329 162 36 chr3 212425600 212426044 -15098534 - L3 LINE CR1 -592 985 486 364 263 86 63 chr3 212426051 212426226 -15098352 - MIR3 SINE MIR -10 198 20 443 330 84 25 chr3 212426358 212426561 -15098017 - L3 LINE CR1 -1303 274 60 1897 131 10 13 chr3 212427065 212427378 -15097200 - AluSq SINE Alu -1 312 1 434 300 88 40 chr3 212427519 212427746 -15096832 - MIR SINE MIR -2 260 23 195 209 0 70 chr3 212427842 212427854 -15096724 + L2 LINE L2 3237 3276 -37 215 161 0 0 chr3 212427854 212427885 -15096693 + MIR SINE MIR 201 231 -31 459 280 20 27 chr3 212428293 212428443 -15096135 + MIR SINE MIR 24 172 -90 23 33 0 0 chr3 212428776 212428806 -15095772 + GC_rich Low_complexity Low_complexity 1 30 0 400 273 99 8 chr3 212429535 212429656 -15094922 - L3b LINE CR1 -114 1469 1338 310 231 30 166 chr3 212429860 212429891 -15094687 - L1MC5 LINE L1 -26 7935 7901 2188 79 0 3 chr3 212429891 212430183 -15094395 + AluSx SINE Alu 1 291 -21 310 231 30 166 chr3 212430183 212430350 -15094228 - L1MC5 LINE L1 -60 7901 7764 400 193 180 47 chr3 212430383 212430616 -15093962 - L1MC5 LINE L1 -268 7693 7430 686 159 148 6 chr3 212430616 212430776 -15093802 - MER5A DNA MER1_type 0 189 4 633 239 44 12 chr3 212430779 212431037 -15093541 - L1MC5 LINE L1 -393 7415 7260 2260 100 0 3 chr3 212431197 212431508 -15093070 - AluSx SINE Alu -2 310 1 439 259 28 28 chr3 212431534 212431677 -15092901 - MIR3 SINE MIR -11 197 55 339 307 85 7 chr3 212431755 212431908 -15092670 - MIR3 SINE MIR 0 208 44 332 321 80 73 chr3 212432862 212433189 -15091389 + L2 LINE L2 2943 3271 -1 254 194 149 0 chr3 212433526 212433593 -15090985 - L2 LINE L2 -49 3264 3188 596 224 153 6 chr3 212433607 212433790 -15090788 + MER63A DNA MER1_type 1 210 0 2106 92 0 17 chr3 212434023 212434318 -15090260 - AluSc SINE Alu -19 290 1 262 233 147 78 chr3 212434491 212434589 -15089989 - MIR SINE MIR -2 260 149 2052 112 0 3 chr3 212434589 212434883 -15089695 - AluSx SINE Alu -19 293 1 262 233 147 78 chr3 212434883 212434913 -15089665 - MIR SINE MIR -113 149 123 840 240 62 172 chr3 212435070 212435662 -15088916 + L3 LINE CR1 1039 1565 -12 195 129 0 0 chr3 212436209 212436240 -15088338 + (T)n Simple_repeat Simple_repeat 1 31 0 301 309 57 32 chr3 212436836 212436959 -15087619 - L2 LINE L2 -1 3312 3187 259 243 243 47 chr3 212437118 212437266 -15087312 + MIR SINE MIR 86 262 0 361 212 102 17 chr3 212438422 212438540 -15086038 + L1ME4a LINE L1 5993 6120 -1 187 323 81 24 chr3 212439061 212439185 -15085393 + MIR3 SINE MIR 11 141 -67 1901 138 11 0 chr3 212439196 212439479 -15085099 + AluSx SINE Alu 1 286 -26 21 0 0 0 chr3 212439669 212439690 -15084888 + AT_rich Low_complexity Low_complexity 1 21 0 246 22 239 22 chr3 212439690 212439736 -15084842 - L1MB5 LINE L1 -31 6143 6088 440 265 126 26 chr3 212439758 212439988 -15084590 - L1M4 LINE L1 -432 5752 5500 2274 108 0 0 chr3 212440044 212440351 -15084227 + AluSq SINE Alu 1 307 -6 226 192 0 39 chr3 212440363 212440415 -15084163 + L1MC/D LINE L1 5831 5880 -1928 1911 139 7 3 chr3 212440498 212440799 -15083779 + AluSx SINE Alu 2 303 -9 23 33 0 0 chr3 212440950 212440980 -15083598 + AT_rich Low_complexity Low_complexity 1 30 0 1977 119 0 0 chr3 212441173 212441450 -15083128 + AluSc SINE Alu 1 277 -32 216 0 0 0 chr3 212441453 212441477 -15083101 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1954 141 10 0 chr3 212441812 212442118 -15082460 - AluSq SINE Alu -4 309 1 313 316 123 18 chr3 212442434 212442605 -15081973 + MIR SINE MIR 48 236 -26 352 266 108 44 chr3 212442630 212442788 -15081790 - MIR SINE MIR -74 188 21 2179 115 0 0 chr3 212443099 212443411 -15081167 - AluSx SINE Alu 0 312 1 192 77 0 0 chr3 212443496 212443522 -15081056 + (A)n Simple_repeat Simple_repeat 1 26 0 235 247 56 22 chr3 212443560 212443649 -15080929 + MIR SINE MIR 73 164 -98 2126 106 0 10 chr3 212444160 212444471 -15080107 - AluSx SINE Alu -4 308 1 369 165 0 99 chr3 212444488 212444579 -15079999 + MIR SINE MIR 110 191 -71 901 213 29 6 chr3 212446200 212446374 -15078204 - MER45A DNA AcHobo 0 178 1 214 187 320 13 chr3 212448594 212448669 -15075909 - MER5A DNA MER1_type -83 106 9 417 327 12 12 chr3 212448694 212448862 -15075716 - MER5A DNA MER1_type -2 187 20 640 287 33 6 chr3 212449296 212449477 -15075101 + MIR SINE MIR 74 259 -3 21 0 0 0 chr3 212449570 212449591 -15074987 + AT_rich Low_complexity Low_complexity 1 21 0 194 213 213 40 chr3 212449805 212449880 -15074698 - L2 LINE L2 0 3313 3226 334 320 89 55 chr3 212450011 212450202 -15074376 - L2 LINE L2 -337 2977 2794 2001 120 0 3 chr3 212450202 212450503 -15074075 + AluSx SINE Alu 5 304 -8 334 320 89 55 chr3 212450503 212450871 -15073707 - L2 LINE L2 -520 2794 2399 186 43 0 0 chr3 212450947 212450970 -15073608 + (TCCA)n Simple_repeat Simple_repeat 4 26 0 392 224 35 0 chr3 212450971 212451056 -15073522 - L2 LINE L2 -15 3257 3170 1837 126 22 4 chr3 212451085 212451363 -15073215 - AluSx SINE Alu -29 283 1 293 261 50 50 chr3 212451535 212451654 -15072924 - MIR SINE MIR -40 222 104 497 271 145 19 chr3 212451936 212452143 -15072435 + MIR SINE MIR 20 252 -10 304 318 26 78 chr3 212453144 212453292 -15071286 + MIR3 SINE MIR 3 140 -68 2369 72 0 3 chr3 212453292 212453596 -15070982 + AluSc SINE Alu 1 303 -6 304 318 26 78 chr3 212453596 212453639 -15070939 + MIR3 SINE MIR 140 184 -24 563 210 70 19 chr3 212453696 212453853 -15070725 - Charlie8 DNA MER1_type -2221 196 32 204 40 0 0 chr3 212454221 212454246 -15070332 + (A)n Simple_repeat Simple_repeat 1 25 0 184 195 0 0 chr3 212457071 212457112 -15067466 - MIR SINE MIR -70 192 152 502 284 62 7 chr3 212457444 212457623 -15066955 + MIR SINE MIR 15 200 -62 1139 59 0 0 chr3 212457630 212457766 -15066812 + AluSq/x SINE Alu 1 136 -177 1710 106 68 4 chr3 212457766 212458030 -15066548 + AluSg SINE Alu 1 281 -29 207 0 0 0 chr3 212458033 212458056 -15066522 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 218 31 0 31 chr3 212458072 212458104 -15066474 + (TA)n Simple_repeat Simple_repeat 1 31 0 754 231 0 40 chr3 212460162 212460335 -15064243 - FRAM SINE Alu 0 166 1 654 273 29 34 chr3 212460600 212460838 -15063740 + MER102b DNA MER1_type 104 340 -1 283 310 80 26 chr3 212462106 212462219 -15062359 + L3 LINE CR1 1452 1570 -7 479 291 44 32 chr3 212462355 212462513 -15062065 - MIR SINE MIR -55 207 48 2013 185 23 42 chr3 212463937 212464315 -15060263 + MLT1C LTR MaLR 1 370 -97 2242 77 0 13 chr3 212464315 212464614 -15059964 - AluSx SINE Alu -17 295 1 2013 185 23 42 chr3 212464614 212464711 -15059867 + MLT1C LTR MaLR 370 467 0 253 360 96 15 chr3 212464724 212464860 -15059718 + L2 LINE L2 3125 3271 -1 2267 73 0 3 chr3 212465047 212465374 -15059204 + AluSc SINE Alu 1 309 0 532 331 96 45 chr3 212465976 212466329 -15058249 - L3b LINE CR1 -90 1493 1123 409 215 201 23 chr3 212466385 212466604 -15057974 + MIR SINE MIR 5 262 0 1989 110 3 13 chr3 212466706 212467016 -15057562 + AluSx SINE Alu 1 307 -5 333 224 28 19 chr3 212467618 212467725 -15056853 + L1ME4a LINE L1 5983 6090 -31 234 304 10 20 chr3 212467993 212468095 -15056483 - MIR SINE MIR 0 262 162 1905 182 59 74 chr3 212468096 212468540 -15056038 + MLT1D LTR MaLR 3 439 -66 2407 55 0 13 chr3 212468540 212468852 -15055726 - AluY SINE Alu -3 308 1 1905 182 59 74 chr3 212468852 212468918 -15055660 + MLT1D LTR MaLR 439 505 0 411 234 36 27 chr3 212468919 212469030 -15055548 - MIR SINE MIR -111 151 40 521 300 112 41 chr3 212469068 212469408 -15055170 - L3 LINE CR1 -103 1474 1111 359 291 249 0 chr3 212471448 212471613 -15052965 - MIR SINE MIR -3 259 54 671 195 162 7 chr3 212472320 212472474 -15052104 + MER45A DNA AcHobo 1 178 0 423 272 70 21 chr3 212472619 212472761 -15051817 + MIR SINE MIR 104 250 -12 471 326 44 57 chr3 212472776 212473020 -15051558 + MIR SINE MIR 8 250 -12 1921 153 10 19 chr3 212473080 212473394 -15051184 + AluSx SINE Alu 1 311 -1 213 39 0 0 chr3 212474271 212474297 -15050281 + (CAAAA)n Simple_repeat Simple_repeat 2 27 0 195 42 0 0 chr3 212475506 212475530 -15049048 + (TGAA)n Simple_repeat Simple_repeat 1 24 0 2247 108 14 0 chr3 212475597 212475893 -15048685 + AluSq SINE Alu 1 300 -13 2073 110 0 0 chr3 212476360 212476651 -15047927 + AluSx SINE Alu 21 311 0 624 207 43 0 chr3 212478045 212478209 -15046369 - L1MD3 LINE L1 0 7995 7825 2180 123 23 0 chr3 212478957 212479259 -15045319 - AluSq SINE Alu -4 309 1 2144 127 0 7 chr3 212479477 212479776 -15044802 - AluSx SINE Alu -15 297 1 182 289 58 39 chr3 212479985 212480089 -15044489 - L3 LINE CR1 -1102 475 370 694 162 56 194 chr3 212480884 212481036 -15043542 - MER33 DNA MER1_type -2261 324 253 2286 108 0 10 chr3 212481036 212481341 -15043237 - AluSx SINE Alu -10 302 1 694 162 56 194 chr3 212481341 212481564 -15043014 - MER33 DNA MER1_type -2332 253 1 540 81 0 0 chr3 212483030 212483104 -15041474 + (TTCC)n Simple_repeat Simple_repeat 4 77 0 358 247 12 12 chr3 212483582 212483663 -15040915 + MER5A DNA MER1_type 26 106 -83 308 242 68 83 chr3 212483590 212483722 -15040856 - MER5A DNA MER1_type -22 167 38 * 225 333 98 18 chr3 212483811 212484006 -15040572 + MIR SINE MIR 8 254 -8 243 232 71 0 chr3 212484444 212484500 -15040078 + MIR SINE MIR 94 153 -109 1919 139 37 0 chr3 212484629 212484929 -15039649 + AluSx SINE Alu 1 310 0 268 270 165 43 chr3 212485200 212485315 -15039263 + MIR SINE MIR 127 255 -7 1696 106 35 12 chr3 212485318 212485573 -15039005 + L1PA11 LINE L1 5912 6172 -2 2402 95 0 0 chr3 212485624 212485919 -15038659 - AluSx SINE Alu -17 295 1 354 249 11 143 chr3 212488352 212488541 -15036037 - L3 LINE CR1 -108 1469 1306 205 276 138 35 chr3 212488602 212488689 -15035889 - MIR SINE MIR -66 196 101 373 210 123 0 chr3 212488689 212488770 -15035808 + 5S rRNA rRNA 1 91 -30 211 213 29 22 chr3 212488776 212488845 -15035733 - MIR3 SINE MIR -138 70 13 240 176 66 66 chr3 212489464 212489555 -15035023 + L2 LINE L2 2881 2971 -342 291 385 67 3 chr3 212489566 212489849 -15034729 + L2 LINE L2 2380 2680 -634 440 345 52 57 chr3 212490270 212490887 -15033691 - L2 LINE L2 -13 3259 2647 1268 268 154 10 chr3 212491419 212492162 -15032416 + L2 LINE L2 2458 3313 0 203 337 71 20 chr3 212492348 212492446 -15032132 - MIR3 SINE MIR -105 103 1 1885 214 42 8 chr3 212493527 212493999 -15030579 + Charlie4a DNA MER1_type 21 508 0 21 0 0 0 chr3 212494755 212494776 -15029802 + GC_rich Low_complexity Low_complexity 1 21 0 207 262 0 0 chr3 212495588 212495630 -15028948 + polypurine Low_complexity Low_complexity 1 42 0 518 259 43 7 chr3 212496551 212496690 -15027888 - MIR SINE MIR -92 170 27 227 338 53 43 chr3 212497251 212497458 -15027120 + L2 LINE L2 2224 2432 -882 2279 97 0 0 chr3 212497916 212498237 -15026341 + AluSg SINE Alu 1 321 0 2395 84 0 0 chr3 212498354 212498640 -15025938 + AluSq SINE Alu 1 286 -27 300 53 0 0 chr3 212498640 212498678 -15025900 + (CAAG)n Simple_repeat Simple_repeat 2 39 0 2369 98 0 0 chr3 212499327 212499633 -15024945 - AluSx SINE Alu -6 306 1 223 237 43 75 chr3 212499660 212499753 -15024825 - MIR SINE MIR -62 200 111 2436 79 0 29 chr3 212500723 212501039 -15023539 - AluSc SINE Alu -2 307 1 1406 243 22 26 chr3 212501119 212501657 -15022921 - L1ME3 LINE L1 0 6162 5558 2387 94 3 0 chr3 212501667 212501966 -15022612 - AluSx SINE Alu -12 300 1 791 174 0 7 chr3 212502476 212502625 -15021953 + L1PA14 LINE L1 6014 6161 0 216 97 0 0 chr3 212502987 212503018 -15021560 + (TG)n Simple_repeat Simple_repeat 1 31 0 344 263 38 44 chr3 212504414 212504574 -15020004 + MIR SINE MIR 85 243 -19 843 240 6 6 chr3 212504597 212504768 -15019810 + MER5B DNA MER1_type 7 177 -1 1855 161 7 14 chr3 212505207 212505499 -15019079 - AluJb SINE Alu -22 290 1 507 267 7 15 chr3 212505703 212505838 -15018740 - MIR SINE MIR -109 153 20 215 329 49 0 chr3 212506307 212506389 -15018189 + L2 LINE L2 2430 2515 -799 512 345 106 34 chr3 212506592 212507175 -15017403 + L2 LINE L2 2653 3272 0 2194 74 30 34 chr3 212507792 212508089 -15016489 - AluSq SINE Alu -17 296 1 270 253 66 93 chr3 212508136 212508318 -15016260 + MIR SINE MIR 86 262 0 2350 109 3 0 chr3 212508437 212508741 -15015837 - AluSc SINE Alu -4 305 1 240 241 0 69 chr3 212509023 212509139 -15015439 + CT-rich Low_complexity Low_complexity 3 110 0 1765 158 3 94 chr3 212509247 212509458 -15015120 - AluSp SINE Alu -2 311 141 5606 45 0 0 chr3 212509458 212510118 -15014460 - L1PA5 LINE L1 -1 6153 5494 1765 158 3 94 chr3 212510118 212510248 -15014330 - AluSp SINE Alu -172 141 1 21 0 0 0 chr3 212510256 212510277 -15014301 + AT_rich Low_complexity Low_complexity 1 21 0 586 0 27 0 chr3 212511015 212511089 -15013489 + (TCTA)n Simple_repeat Simple_repeat 2 77 0 697 288 34 25 chr3 212511094 212511420 -15013158 + L1ME4a LINE L1 5603 5931 -190 304 285 28 21 chr3 212511433 212511577 -15013001 + L1ME4a LINE L1 5976 6120 -1 311 289 0 0 chr3 212512236 212512319 -15012259 + MIR SINE MIR 154 236 -26 437 307 67 13 chr3 212512402 212512552 -15012026 - MIR SINE MIR -97 165 8 506 252 79 0 chr3 212513527 212513654 -15010924 + MIR3 SINE MIR 66 202 -6 280 173 53 13 chr3 212514407 212514482 -15010096 + MIR SINE MIR 118 195 -67 212 250 0 0 chr3 212514517 212514561 -15010017 + CT-rich Low_complexity Low_complexity 1 44 0 465 307 115 5 chr3 212515177 212515395 -15009183 + MIR SINE MIR 21 262 0 808 273 86 103 chr3 212516583 212517234 -15007344 + L3 LINE CR1 712 1351 -226 218 270 108 27 chr3 212517353 212517464 -15007114 + L3 LINE CR1 1370 1489 -88 1424 239 98 66 chr3 212517484 212517611 -15006967 + L2 LINE L2 2523 2644 -669 1994 114 0 11 chr3 212517611 212517883 -15006695 - AluSx SINE Alu -41 271 3 1424 239 98 66 chr3 212517883 212517977 -15006601 + L2 LINE L2 2644 2734 -579 2232 89 27 0 chr3 212517977 212518269 -15006309 - AluSg SINE Alu -10 300 1 1424 239 98 66 chr3 212518269 212518805 -15005773 + L2 LINE L2 2734 3310 -3 296 290 32 32 chr3 212519416 212519509 -15005069 + L3 LINE CR1 1483 1575 -2 213 316 63 21 chr3 212520031 212520126 -15004452 + MER5B DNA MER1_type 31 129 -49 632 259 78 39 chr3 212520134 212520366 -15004212 + MIR SINE MIR 22 262 0 238 273 81 30 chr3 212520379 212520478 -15004100 - MIR SINE MIR -6 256 153 2458 76 3 10 chr3 212520737 212521051 -15003527 - AluSp SINE Alu -1 312 1 292 248 150 35 chr3 212521457 212521570 -15003008 + MIR SINE MIR 24 149 -113 1392 211 97 23 chr3 212521767 212521821 -15002757 + L1MC5 LINE L1 7407 7456 -505 2270 96 0 10 chr3 212521821 212522140 -15002438 + AluSq SINE Alu 1 313 0 1392 211 97 23 chr3 212522140 212522568 -15002010 + L1MC5 LINE L1 7456 7925 -36 253 286 74 83 chr3 212523320 212523537 -15001041 + L3b LINE CR1 1351 1565 -18 2189 250 79 48 chr3 212525506 212526227 -14998351 + L1MEc LINE L1 36 778 -5618 730 276 22 4 chr3 212526218 212526446 -14998132 + L1M4 LINE L1 3550 3781 -2365 * 230 114 0 0 chr3 212526466 212526501 -14998077 + L1ME1 LINE L1 5369 5403 -763 1384 230 42 30 chr3 212526503 212526976 -14997602 + L1ME1 LINE L1 5684 6299 -13 265 247 0 75 chr3 212527416 212527509 -14997069 + MIR3 SINE MIR 83 168 -40 2359 76 0 45 chr3 212527581 212527895 -14996683 + AluSx SINE Alu 1 300 -12 1931 163 48 5 chr3 212528027 212528401 -14996177 - L1MC1 LINE L1 0 6333 5944 1480 101 5 5 chr3 212529427 212529626 -14994952 + AluSp SINE Alu 105 303 -10 2146 103 0 3 chr3 212530290 212530618 -14993960 + AluSc SINE Alu 1 327 0 198 0 0 0 chr3 212530708 212530730 -14993848 + (A)n Simple_repeat Simple_repeat 1 22 0 1859 156 40 7 chr3 212530907 212531208 -14993370 + AluSx SINE Alu 2 312 0 703 180 136 29 chr3 212531231 212531437 -14993141 - MIR SINE MIR 0 262 35 333 0 0 0 chr3 212532138 212532175 -14992403 + (CA)n Simple_repeat Simple_repeat 1 37 0 266 334 9 26 chr3 212533301 212533513 -14991065 + GA-rich Low_complexity Low_complexity 1 208 0 2157 131 3 10 chr3 212534798 212535206 -14989372 - AluSx SINE Alu 0 406 1 2465 59 0 0 chr3 212536418 212536707 -14987871 + AluY SINE Alu 4 292 -19 252 288 0 14 chr3 212536817 212536890 -14987688 - Charlie7 DNA MER1_type -2507 105 34 217 329 36 84 chr3 212537089 212537338 -14987240 + L2 LINE L2 2987 3223 -49 1047 134 0 0 chr3 212537530 212537709 -14986869 + (TA)n Simple_repeat Simple_repeat 2 180 0 296 242 111 10 chr3 212538037 212538136 -14986442 - MIR SINE MIR -84 124 16 277 282 113 14 chr3 212538585 212538727 -14985851 - MIR SINE MIR -74 188 33 329 324 60 22 chr3 212539766 212539951 -14984627 - MIR SINE MIR -53 209 18 223 288 135 18 chr3 212539948 212540059 -14984519 + L2 LINE L2 3133 3256 -16 * 2533 250 222 36 chr3 212540099 212541844 -14982734 - L2 LINE L2 0 3313 1236 279 352 55 40 chr3 212542232 212542431 -14982147 + L2 LINE L2 2682 2883 -431 294 336 35 9 chr3 212542486 212542602 -14981976 + L2 LINE L2 2976 3094 -178 300 250 205 27 chr3 212543984 212544096 -14980482 - MIR SINE MIR -111 151 20 2613 53 3 0 chr3 212545056 212545359 -14979219 + AluSg SINE Alu 1 304 -6 503 259 96 6 chr3 212545873 212546039 -14978539 - MIR SINE MIR -14 248 68 615 241 41 12 chr3 212546134 212546304 -14978274 + MER5B DNA MER1_type 2 176 -2 3027 3 0 0 chr3 212546904 212547222 -14977356 + AluYb8 SINE Alu 1 318 0 206 250 22 87 chr3 212547381 212547473 -14977105 - MER5A DNA MER1_type -6 183 98 311 250 43 22 chr3 212547998 212548090 -14976488 + L2 LINE L2 3219 3312 -1 730 243 11 11 chr3 212548169 212548346 -14976232 - MER5B DNA MER1_type -1 177 1 703 173 160 0 chr3 212548627 212548783 -14975795 + MER5A DNA MER1_type 9 189 0 468 0 0 0 chr3 212549243 212549295 -14975283 + (CA)n Simple_repeat Simple_repeat 1 52 0 256 368 11 35 chr3 212549368 212549542 -14975036 + MIR3 SINE MIR 24 193 -15 2415 86 3 0 chr3 212549542 212549844 -14974734 + AluSx SINE Alu 1 303 -9 831 323 87 31 chr3 212550133 212550706 -14973872 - L3 LINE CR1 -9 1568 964 330 216 54 102 chr3 212550750 212550823 -14973755 + L1ME4a LINE L1 5805 5880 -241 839 251 139 62 chr3 212550823 212551369 -14973209 + MLT1G LTR MaLR 3 590 0 330 216 54 102 chr3 212551369 212551462 -14973116 + L1ME4a LINE L1 5880 5963 -158 208 216 0 0 chr3 212551660 212551697 -14972881 + (TG)n Simple_repeat Simple_repeat 2 38 0 226 281 49 12 chr3 212552855 212552937 -14971641 + L2 LINE L2 3179 3263 -50 1241 216 149 20 chr3 212553523 212553879 -14970699 + MLT1C LTR MaLR 1 402 -65 440 254 46 29 chr3 212554318 212554491 -14970087 - MIR3 SINE MIR -8 200 25 385 228 53 18 chr3 212555039 212555153 -14969425 + L1ME4a LINE L1 5804 5921 -200 575 284 13 58 chr3 212556376 212556601 -14967977 - MER112 DNA MER1_type -43 217 3 185 307 59 0 chr3 212556801 212556902 -14967676 + L3 LINE CR1 1288 1394 -183 3065 124 0 0 chr3 212557221 212557665 -14966913 + L1PA15 LINE L1 5719 6162 -3 240 283 65 22 chr3 212558413 212558505 -14966073 - MIR SINE MIR -43 219 124 2206 102 6 42 chr3 212558582 212558724 -14965854 + AluSc SINE Alu 2 147 -162 2467 79 0 3 chr3 212558724 212559028 -14965550 + AluY SINE Alu 1 303 -8 2206 102 6 42 chr3 212559028 212559198 -14965380 + AluSc SINE Alu 147 303 -6 542 272 27 76 chr3 212559264 212559536 -14965042 + MIR SINE MIR 3 261 -1 4807 105 53 81 chr3 212559570 212560482 -14964096 + L1PA16 LINE L1 5278 6163 -3 3283 189 121 121 chr3 212560576 212561180 -14963398 - L1MC4a LINE L1 -633 7175 6572 2070 128 0 24 chr3 212561180 212561478 -14963100 + AluSx SINE Alu 2 292 -20 3283 189 121 121 chr3 212561478 212561517 -14963061 - L1MC4a LINE L1 -1236 6572 6534 243 0 0 0 chr3 212561517 212561544 -14963034 + (TC)n Simple_repeat Simple_repeat 2 28 0 3283 189 121 121 chr3 212561544 212561945 -14962633 - L1MC4a LINE L1 -1274 6534 6134 1783 174 3 23 chr3 212561945 212562255 -14962323 + AluJo SINE Alu 1 304 -8 3283 189 121 121 chr3 212562255 212562445 -14962133 - L1MC4a LINE L1 -1674 6134 5936 1632 152 9 81 chr3 212562445 212562780 -14961798 - AluJo SINE Alu -1 311 1 3283 189 121 121 chr3 212562780 212562899 -14961679 - L1MC4a LINE L1 -1871 5937 5819 183 262 0 0 chr3 212563480 212563522 -14961056 - L2 LINE L2 -217 3055 3014 2353 95 0 10 chr3 212563642 212563948 -14960630 - AluSx SINE Alu -9 303 1 455 248 18 0 chr3 212564289 212564402 -14960176 + MIR3 SINE MIR 81 195 -13 557 238 122 107 chr3 212565446 212566008 -14958570 + MLT1G LTR MaLR 20 590 0 250 244 143 36 chr3 212566928 212567096 -14957482 - MIR SINE MIR -52 210 25 265 270 190 36 chr3 212567639 212567776 -14956802 + MIR SINE MIR 29 186 -76 2820 126 39 0 chr3 212567792 212568198 -14956380 + MSTC LTR MaLR 4 425 -3 466 201 75 37 chr3 212568232 212568366 -14956212 + MER5A DNA MER1_type 1 139 -50 699 279 25 0 chr3 212569675 212569879 -14954699 - MIR SINE MIR -7 255 47 203 355 89 0 chr3 212570138 212570178 -14954400 + MIR3 SINE MIR 43 78 -130 1552 126 9 22 chr3 212570178 212570401 -14954177 - AluSq SINE Alu -50 263 44 203 355 89 0 chr3 212570401 212570484 -14954094 + MIR3 SINE MIR 78 177 -31 381 258 103 105 chr3 212570623 212571003 -14953575 + L1ME LINE L1 5426 5804 -317 937 216 6 55 chr3 212571046 212571391 -14953187 + LTR16A LTR ERVL 57 436 -14 1354 291 60 67 chr3 212571509 212572471 -14952107 + L1M4 LINE L1 2980 3947 -2199 183 100 0 0 chr3 212572471 212572501 -14952077 + (CAAA)n Simple_repeat Simple_repeat 3 32 0 1354 291 60 67 chr3 212572501 212572957 -14951621 + L1M4 LINE L1 3947 4390 -1756 1879 166 3 3 chr3 212572957 212573265 -14951313 + AluJo SINE Alu 1 308 -4 1354 291 60 67 chr3 212573265 212573416 -14951162 + L1M4 LINE L1 4390 4540 -1606 183 261 112 67 chr3 212573421 212573555 -14951023 + MIR SINE MIR 64 203 -59 232 352 50 50 chr3 212574237 212574416 -14950162 - L2 LINE L2 -18 3254 3076 436 268 101 40 chr3 212574908 212575106 -14949472 + MIR SINE MIR 47 256 -6 675 214 0 8 chr3 212576435 212576566 -14948012 + FLAM_A SINE Alu 1 130 -3 572 0 0 0 chr3 212576694 212576767 -14947811 - L1P LINE L1 -804 5351 5279 4052 31 0 0 chr3 212576767 212577245 -14947333 + L1PA2 LINE L1 5671 6151 -4 231 237 7 15 chr3 212577602 212577682 -14946896 + T-rich Low_complexity Low_complexity 1 134 0 1821 167 27 7 chr3 212578352 212578652 -14945926 - AluSx SINE Alu -4 308 3 328 245 101 61 chr3 212578768 212579046 -14945532 - L1ME4a LINE L1 -76 6045 5757 4938 83 12 25 chr3 212579077 212579826 -14944752 + L1PA14 LINE L1 5420 6158 -3 2186 77 4 0 chr3 212580836 212581130 -14943448 - AluSg1 SINE Alu 0 300 6 276 30 0 0 chr3 212581719 212581752 -14942826 + (CTATA)n Simple_repeat Simple_repeat 5 37 0 423 279 131 47 chr3 212581986 212582236 -14942342 - L1MEc LINE L1 -3720 2495 2268 2330 87 0 3 chr3 212582236 212582545 -14942033 + AluY SINE Alu 1 308 -3 423 279 131 47 chr3 212582545 212582649 -14941929 - L1MEc LINE L1 -3947 2268 2159 2118 129 7 3 chr3 212582649 212582952 -14941626 - AluSq SINE Alu -9 304 1 475 286 72 81 chr3 212583281 212583521 -14941057 - HAL1b LINE L1 -621 727 491 1840 160 10 0 chr3 212583521 212583815 -14940763 - AluJb SINE Alu -10 302 6 475 286 72 81 chr3 212583815 212584004 -14940574 - HAL1b LINE L1 -857 491 302 462 111 0 56 chr3 212584046 212584136 -14940442 - L1PA8 LINE L1 0 6172 6088 24 0 0 0 chr3 212584136 212584160 -14940418 + AT_rich Low_complexity Low_complexity 1 24 0 671 139 10 0 chr3 212584160 212584261 -14940317 - AluJb SINE Alu -30 282 181 4507 169 21 23 chr3 212584832 212584959 -14939619 - L1MB3 LINE L1 0 6183 6057 1968 140 3 20 chr3 212584959 212585259 -14939319 - AluSx SINE Alu -17 295 1 4507 169 21 23 chr3 212585259 212586110 -14938468 - L1MB3 LINE L1 -126 6057 5208 227 331 14 58 chr3 212586450 212586589 -14937989 - MER5A DNA MER1_type -22 167 35 220 331 22 59 chr3 212586476 212586612 -14937966 + MER5B DNA MER1_type 48 178 0 * 372 362 86 9 chr3 212586620 212586841 -14937737 + L3 LINE CR1 278 515 -1062 206 352 152 19 chr3 212586850 212587004 -14937574 + L3 LINE CR1 1048 1239 -338 421 204 31 128 chr3 212587004 212587200 -14937378 + MER5B DNA MER1_type 1 177 -1 206 352 152 19 chr3 212587200 212587255 -14937323 + L3 LINE CR1 1239 1285 -292 612 307 151 33 chr3 212587556 212588254 -14936324 + L2 LINE L2 2278 3068 -204 2037 139 14 0 chr3 212588310 212588598 -14935980 + AluSx SINE Alu 1 292 -20 225 73 0 0 chr3 212588627 212588668 -14935910 - LTR66 LTR ERVL -176 434 394 239 173 27 40 chr3 212588670 212588745 -14935833 - L1MC4 LINE L1 -1355 6687 6614 197 364 0 0 chr3 212588821 212588887 -14935691 + L2 LINE L2 3203 3268 -4 523 115 33 82 chr3 212639816 212639938 -14884640 - AluSq/x SINE Alu -194 118 3 21 0 0 0 chr3 212639940 212639961 -14884617 + AT_rich Low_complexity Low_complexity 1 21 0 316 271 263 15 chr3 212639990 212640256 -14884322 - L2 LINE L2 -633 2681 2350 1629 106 4 34 chr3 212641516 212641752 -14882826 + AluSq SINE Alu 76 304 -9 2119 139 0 3 chr3 212642712 212643022 -14881556 + AluJb SINE Alu 1 309 -3 710 261 38 31 chr3 212643120 212643381 -14881197 + MER102a DNA MER1_type 51 313 -17 2860 175 25 71 chr3 212644494 212645187 -14879391 + L1M3e LINE L1 2 662 -6368 * 12494 147 14 4 chr3 212645169 212646664 -14877914 - L1PA14 LINE L1 -199 5962 4421 2333 120 10 0 chr3 212646664 212646973 -14877605 - AluSx SINE Alu 0 312 1 12494 147 14 4 chr3 212646973 212648399 -14876179 - L1PA14 LINE L1 -1740 4421 3011 198 313 16 0 chr3 212648401 212648465 -14876113 - MER5B DNA MER1_type -24 154 90 313 302 164 31 chr3 212648512 212648671 -14875907 + MIR3 SINE MIR 20 199 -9 564 268 103 36 chr3 212649139 212649363 -14875215 + MIR SINE MIR 9 247 -15 3920 166 5 8 chr3 212650089 212650726 -14873852 - MER41B LTR ERV1 0 635 1 473 289 89 18 chr3 212651042 212651267 -14873311 + L3 LINE CR1 1119 1359 -218 2398 90 3 0 chr3 212651769 212652069 -14872509 - AluSg SINE Alu -9 301 1 351 0 0 0 chr3 212652792 212652831 -14871747 + (TG)n Simple_repeat Simple_repeat 2 40 0 2359 101 0 13 chr3 212652881 212653197 -14871381 + AluSx SINE Alu 1 312 0 225 217 200 26 chr3 212654140 212654255 -14870323 + L3 LINE CR1 850 984 -593 362 308 45 19 chr3 212654354 212654510 -14870068 + L3 LINE CR1 1218 1377 -200 2554 53 0 10 chr3 212654512 212654813 -14869765 - AluY SINE Alu -13 298 1 471 314 83 6 chr3 212654871 212655040 -14869538 + MIR SINE MIR 6 187 -75 314 333 28 0 chr3 212655201 212655309 -14869269 + L3 LINE CR1 1420 1530 -47 245 281 138 37 chr3 212655314 212655492 -14869086 + MIR SINE MIR 10 200 -62 255 313 130 9 chr3 212656107 212656222 -14868356 - L2 LINE L2 -3 3310 3182 633 271 171 10 chr3 212656341 212656540 -14868038 - MIR SINE MIR -12 250 20 254 287 25 57 chr3 212656959 212657081 -14867497 - MIR3 SINE MIR -1 207 90 277 340 94 33 chr3 212657151 212657363 -14867215 - MIR SINE MIR -10 252 28 463 240 108 0 chr3 212658103 212658152 -14866426 - MIR SINE MIR 0 262 220 248 0 31 0 chr3 212658152 212658184 -14866394 + (TCTA)n Simple_repeat Simple_repeat 4 36 0 463 240 108 0 chr3 212658184 212658263 -14866315 - MIR SINE MIR -42 220 120 257 352 48 0 chr3 212658357 212658462 -14866116 - MIR SINE MIR -148 114 5 991 296 105 17 chr3 212658918 212659471 -14865107 - L2 LINE L2 -1 3312 2698 294 300 100 73 chr3 212659642 212659862 -14864716 - L2 LINE L2 -108 3164 2939 330 229 123 47 chr3 212660313 212660483 -14864095 + L1MC5 LINE L1 7033 7215 -746 786 183 37 24 chr3 212660643 212660807 -14863771 - MER5B DNA MER1_type -12 166 1 236 306 156 27 chr3 212661015 212661387 -14863191 + L1MC5 LINE L1 7479 7898 -63 547 296 87 6 chr3 212661539 212661711 -14862867 - MIR SINE MIR -76 186 1 2095 121 35 167 chr3 212662178 212662699 -14861879 - LTR32 LTR ERVL 0 471 20 491 259 95 7 chr3 212662712 212662859 -14861719 + MER5A DNA MER1_type 2 161 -28 2087 144 0 10 chr3 212663439 212663744 -14860834 - AluSx SINE Alu -10 302 1 852 236 91 106 chr3 212663807 212664346 -14860232 + MLT1F LTR MaLR 2 532 -10 313 323 32 0 chr3 212664503 212664596 -14859982 + L2 LINE L2 3169 3264 -8 601 236 28 34 chr3 212665354 212665532 -14859046 + MER5B DNA MER1_type 2 178 0 213 65 0 0 chr3 212666001 212666032 -14858546 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 292 264 123 0 chr3 212666104 212666210 -14858368 + MIR3 SINE MIR 82 200 -8 2117 112 11 0 chr3 212666840 212667125 -14857453 + AluSg SINE Alu 9 296 -14 550 274 38 27 chr3 212667216 212667402 -14857176 - MIR SINE MIR -54 208 21 * 752 310 21 8 chr3 212667340 212667582 -14856996 + MIR SINE MIR 6 250 -12 417 90 0 0 chr3 212668301 212668368 -14856210 + (TG)n Simple_repeat Simple_repeat 1 67 0 2385 80 7 3 chr3 212669347 212669648 -14854930 - AluSc SINE Alu -6 303 2 337 231 9 83 chr3 212669903 212670011 -14854567 + L2 LINE L2 3171 3270 -2 313 171 186 0 chr3 212670505 212670575 -14854003 + MLT1K LTR MaLR 506 588 0 341 228 188 10 chr3 212670918 212671019 -14853559 + L2 LINE L2 3191 3309 -4 2077 128 17 0 chr3 212671167 212671456 -14853122 - AluSx SINE Alu -18 294 1 2248 108 13 3 chr3 212671505 212671812 -14852766 + AluSg SINE Alu 1 310 0 468 148 49 0 chr3 212671812 212671934 -14852644 + GA-rich Low_complexity Low_complexity 2 129 0 212 308 103 28 chr3 212672474 212672581 -14851997 - MIR SINE MIR -40 222 108 325 244 126 16 chr3 212672658 212672785 -14851793 - MIR SINE MIR -12 250 110 275 262 135 14 chr3 212672866 212673007 -14851571 + MIR3 SINE MIR 45 202 -6 251 242 70 0 chr3 212673615 212673708 -14850870 + MIR SINE MIR 17 121 -87 1219 262 56 3 chr3 212673714 212674054 -14850524 - LTR16C LTR ERVL 0 491 134 707 157 45 22 chr3 212674093 212674271 -14850307 + L1 LINE L1 5175 5356 -790 182 172 0 0 chr3 212674895 212674924 -14849654 + MIR SINE MIR 222 250 -12 253 194 81 0 chr3 212674958 212675020 -14849558 - L2 LINE L2 -75 3238 3172 2385 93 59 34 chr3 212675369 212675724 -14848854 - THE1B LTR MaLR 0 364 1 378 187 66 0 chr3 212676658 212676749 -14847829 - MER115 DNA AcHobo 0 693 597 1809 203 33 36 chr3 212677144 212677194 -14847384 + L1ME1 LINE L1 5730 5779 -387 1801 83 4 0 chr3 212677194 212677422 -14847156 + AluSp SINE Alu 84 312 -1 1809 203 33 36 chr3 212677422 212677852 -14846726 + L1ME1 LINE L1 5779 6166 0 3285 73 0 0 chr3 212678586 212678983 -14845595 - L1PA8 LINE L1 -5 6167 5771 218 54 0 54 chr3 212680104 212680141 -14844437 + (TCCCC)n Simple_repeat Simple_repeat 3 37 0 423 293 106 24 chr3 212680295 212680503 -14844075 - MIR SINE MIR -14 248 24 444 139 0 0 chr3 212680535 212680607 -14843971 + L1MB8 LINE L1 5622 5693 -491 938 164 0 30 chr3 212680609 212680774 -14843804 + FRAM SINE Alu 2 161 -15 2227 184 6 55 chr3 212680774 212681262 -14843316 + L1MB8 LINE L1 5715 6178 0 344 218 39 0 chr3 212681366 212681444 -14843134 + MIR SINE MIR 86 166 -96 369 0 0 0 chr3 212681974 212682015 -14842563 + (CA)n Simple_repeat Simple_repeat 2 42 0 2959 239 32 2 chr3 212682088 212682716 -14841862 - MER82 DNA MER2_type -6 647 1 503 259 221 22 chr3 212683021 212683338 -14841240 + L3 LINE CR1 1022 1401 -176 276 284 54 0 chr3 212683346 212683420 -14841158 + Charlie8 DNA MER1_type 4 81 -2336 635 107 80 27 chr3 212683536 212683648 -14840930 + MER53 DNA DNA 1 118 -71 305 270 27 0 chr3 212684403 212684477 -14840101 - MIR3 SINE MIR -8 200 125 476 255 112 12 chr3 212685257 212685418 -14839160 + MIR SINE MIR 21 197 -65 184 250 21 21 chr3 212687436 212687484 -14837094 + MIR3 SINE MIR 107 154 -54 305 328 144 15 chr3 212687840 212688041 -14836537 - L2 LINE L2 -239 3033 2807 320 337 81 23 chr3 212688545 212688717 -14835861 + MIR SINE MIR 57 238 -24 190 202 0 131 chr3 212688748 212688832 -14835746 - MIR SINE MIR -95 113 41 1368 283 47 45 chr3 212690065 212690709 -14833869 + L1MC4 LINE L1 7394 8038 -4 1254 218 73 28 chr3 212691836 212692231 -14832347 + L1MC4 LINE L1 7629 8041 -1 27 49 0 0 chr3 212692682 212692723 -14831855 + AT_rich Low_complexity Low_complexity 1 41 0 184 211 275 0 chr3 212693285 212693394 -14831184 - L2 LINE L2 -1241 2073 1935 523 316 104 9 chr3 212693487 212693718 -14830860 - L2 LINE L2 -639 2675 2423 186 325 80 37 chr3 212693909 212694072 -14830506 + MIR SINE MIR 81 250 -12 * 365 291 73 58 chr3 212694038 212694299 -14830279 + L2 LINE L2 2053 2317 -997 716 83 4 3 chr3 212694685 212694915 -14829663 + AluSq SINE Alu 3 302 -11 470 284 20 46 chr3 212695004 212695307 -14829271 + L1ME4a LINE L1 5814 6108 -13 961 239 29 0 chr3 212695338 212695547 -14829031 - MER58A DNA MER1_type -1 223 9 184 29 29 29 chr3 212695866 212695900 -14828678 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2055 83 19 0 chr3 212695900 212696166 -14828412 - AluSp SINE Alu -42 271 1 1501 0 0 0 chr3 212698251 212698414 -14826164 - L1PA4 LINE L1 -354 5801 5639 2070 17 0 0 chr3 212698414 212698649 -14825929 + L1PA4 LINE L1 5783 6017 -138 31 58 0 0 chr3 212698649 212698701 -14825877 + AT_rich Low_complexity Low_complexity 1 52 0 834 327 52 22 chr3 212698742 212699041 -14825537 - L1ME4a LINE L1 -27 6094 5805 2326 209 14 95 chr3 212699041 212699472 -14825106 - MER87 LTR ERV1 0 541 169 2284 118 0 0 chr3 212699472 212699776 -14824802 + AluSq SINE Alu 1 304 -9 2326 209 14 95 chr3 212699776 212699932 -14824646 - MER87 LTR ERV1 -372 169 2 834 327 52 22 chr3 212699932 212700231 -14824347 - L1ME4a LINE L1 -316 5805 5478 239 362 20 53 chr3 212700332 212700484 -14824094 + L2 LINE L2 1863 2009 -1305 2040 124 17 3 chr3 212700628 212700926 -14823652 - AluSx SINE Alu -10 302 1 2082 115 0 39 chr3 212700928 212701233 -14823345 - AluSx SINE Alu -19 293 1 780 343 106 30 chr3 212701249 212702062 -14822516 + L2 LINE L2 1705 2579 -735 637 156 170 7 chr3 212702108 212702249 -14822329 - MLT2F LTR ERVL 0 663 500 * 1063 220 44 16 chr3 212702248 212702498 -14822080 - MLT2F LTR ERVL -79 584 328 423 56 0 0 chr3 212702697 212702751 -14821827 + (CA)n Simple_repeat Simple_repeat 1 54 0 204 40 0 0 chr3 212703104 212703129 -14821449 + (TTTA)n Simple_repeat Simple_repeat 3 27 0 1619 167 7 14 chr3 212703132 212703414 -14821164 - AluJo SINE Alu -25 287 8 222 233 0 0 chr3 212703435 212703478 -14821100 + L2 LINE L2 3203 3245 -27 1902 143 4 0 chr3 212703606 212703925 -14820653 - AluSg SINE Alu 0 320 1 230 207 35 17 chr3 212703997 212704055 -14820523 + L1ME4a LINE L1 5525 5583 -538 1475 193 39 14 chr3 212704076 212704361 -14820217 - AluJo SINE Alu -20 292 1 900 285 106 16 chr3 212704362 212704864 -14819714 + L1ME4a LINE L1 5574 6120 -1 340 222 123 51 chr3 212704994 212705174 -14819404 - MIR SINE MIR -57 205 9 271 333 71 7 chr3 212705437 212705578 -14819000 + MIR3 SINE MIR 51 200 -8 2893 220 53 29 chr3 212705578 212706337 -14818241 - L1MC4 LINE L1 -157 7885 7109 209 303 67 11 chr3 212707225 212707314 -14817264 - MIR SINE MIR -119 143 50 295 322 81 7 chr3 212707684 212707833 -14816745 + L2 LINE L2 2952 3111 -161 546 272 110 26 chr3 212707859 212708050 -14816528 + MIR SINE MIR 31 237 -25 201 356 17 25 chr3 212708652 212708770 -14815808 - MIR SINE MIR -29 233 117 962 203 45 1 chr3 212708785 212709064 -14815514 + MER33 DNA MER1_type 1 324 0 213 227 53 53 chr3 212709342 212709417 -14815161 - MIR SINE MIR -133 75 1 1098 209 116 11 chr3 212709892 212710160 -14814418 - MSTD LTR MaLR 0 396 101 1131 238 65 67 chr3 212712762 212713207 -14811371 - MLT1J1 LTR MaLR 0 446 3 364 247 12 0 chr3 212714320 212714401 -14810177 - MER5A DNA MER1_type -80 109 28 1569 133 38 0 chr3 212714858 212715121 -14809457 - L1MA5A LINE L1 -5 6292 6020 337 333 0 0 chr3 212715177 212715264 -14809314 - L2 LINE L2 0 3272 3186 233 204 0 0 chr3 212715438 212715482 -14809096 - L1ME4a LINE L1 0 6121 6078 242 156 44 0 chr3 212716236 212716281 -14808297 - AluJo SINE Alu -1 301 255 1332 168 5 5 chr3 212716282 212716490 -14808088 - AluJo SINE Alu -104 208 1 2464 79 0 0 chr3 212716584 212716887 -14807691 - AluSc SINE Alu -6 303 1 246 325 33 60 chr3 212717450 212717601 -14806977 + L3 LINE CR1 1025 1171 -406 246 227 45 0 chr3 212717606 212717672 -14806906 + L1ME4a LINE L1 5527 5595 -526 4358 184 42 25 chr3 212717691 212718798 -14805780 - L1MB7 LINE L1 -3 6181 5058 722 220 19 48 chr3 212718789 212718998 -14805580 + L1M4 LINE L1 4642 4844 -1302 * 3614 214 14 15 chr3 212718990 212719840 -14804738 - L1MB7 LINE L1 -1130 5016 4168 2992 134 30 81 chr3 212720195 212720320 -14804258 - L1PB4 LINE L1 0 6156 6026 2202 125 0 3 chr3 212720320 212720633 -14803945 - AluSx SINE Alu 0 312 1 2992 134 30 81 chr3 212720633 212721097 -14803481 - L1PB4 LINE L1 -130 6026 5597 751 249 161 26 chr3 212721192 212721541 -14803037 + L1ME4a LINE L1 5598 5993 -128 582 339 135 3 chr3 212721656 212721945 -14802633 + L3 LINE CR1 1178 1504 -73 323 312 84 19 chr3 212722604 212722798 -14801780 + MIR3 SINE MIR 34 238 -24 184 250 23 0 chr3 212722845 212722889 -14801689 + MIR SINE MIR 76 120 -88 403 269 128 65 chr3 212724456 212724521 -14800057 - LTR33 LTR ERVL -1 520 461 2052 131 0 10 chr3 212724521 212724819 -14799759 + AluSx SINE Alu 1 295 -17 403 269 128 65 chr3 212724819 212725229 -14799349 - LTR33 LTR ERVL -60 461 15 220 331 101 36 chr3 212725318 212725735 -14798843 + L2 LINE L2 1719 2162 -1152 5561 149 35 35 chr3 212725929 212725992 -14798586 + L1MC1 LINE L1 5269 5331 -1002 2462 121 3 3 chr3 212725992 212726338 -14798240 + L1PA13 LINE L1 5815 6160 -3 5561 149 35 35 chr3 212726338 212727341 -14797237 + L1MC1 LINE L1 5331 6328 -5 815 236 38 0 chr3 212727462 212727674 -14796904 + L1ME4a LINE L1 5663 5882 -239 336 248 126 20 chr3 212727983 212728181 -14796397 + L1ME4a LINE L1 5898 6116 -5 1901 149 3 22 chr3 212728279 212728594 -14795984 + AluSx SINE Alu 1 309 -3 2711 98 128 0 chr3 212728635 212729032 -14795546 + LTR7 LTR ERV1 1 448 -2 9192 162 19 32 chr3 212729034 212732282 -14792296 + HERVH LTR ERV1 1 2987 -4625 846 155 20 0 chr3 212732276 212732424 -14792154 + HERVH LTR ERV1 3140 3290 -4423 * 22 80 0 0 chr3 212732594 212732644 -14791934 + AT_rich Low_complexity Low_complexity 1 50 0 34 65 0 0 chr3 212732676 212732738 -14791840 + AT_rich Low_complexity Low_complexity 1 62 0 2608 51 0 6 chr3 212733635 212733946 -14790632 + AluY SINE Alu 1 309 -2 2015 147 7 7 chr3 212734344 212734643 -14789935 - AluJo SINE Alu -13 299 1 2358 66 0 3 chr3 212734691 212734977 -14789601 - AluY SINE Alu -9 302 18 2780 151 68 53 chr3 212735047 212735648 -14788930 + L1MB7 LINE L1 5566 6175 -9 230 310 97 82 chr3 212735765 212735825 -14788753 - L1MC/D LINE L1 -2063 5745 5687 1392 141 39 8 chr3 212735825 212736080 -14788498 + L1MA8 LINE L1 6025 6287 -4 230 310 97 82 chr3 212736080 212736091 -14788487 - L1MC/D LINE L1 -2121 5687 5678 2091 119 0 3 chr3 212736091 212736377 -14788201 + AluSx SINE Alu 1 285 -27 195 114 0 0 chr3 212736377 212736412 -14788166 + (TTAA)n Simple_repeat Simple_repeat 3 37 0 230 310 97 82 chr3 212736412 212736476 -14788102 - L1MC/D LINE L1 -2130 5678 5616 1537 183 60 3 chr3 212736476 212736761 -14787817 + AluJo SINE Alu 1 301 -11 230 310 97 82 chr3 212736761 212736951 -14787627 - L1MC/D LINE L1 -2192 5616 5412 2015 139 0 10 chr3 212737031 212737334 -14787244 + AluSg SINE Alu 1 300 -10 2044 133 0 3 chr3 212737389 212737689 -14786889 + AluSx SINE Alu 1 299 -13 201 359 33 0 chr3 212738568 212738660 -14785918 - L2 LINE L2 -5 3308 3214 258 192 39 0 chr3 212738665 212738717 -14785861 - MER91 DNA MER1_type -22 118 65 705 319 85 38 chr3 212738718 212738779 -14785799 - L2 LINE L2 -92 3221 3164 2026 132 0 10 chr3 212738779 212739068 -14785510 + AluSx SINE Alu 1 286 -26 242 93 0 23 chr3 212739070 212739113 -14785465 + (CAATA)n Simple_repeat Simple_repeat 2 43 0 705 319 85 38 chr3 212739113 212739353 -14785225 - L2 LINE L2 -149 3164 2937 1938 178 102 92 chr3 212739353 212739959 -14784619 + MER90 LTR ERV1 1 612 -2 705 319 85 38 chr3 212739959 212740154 -14784424 - L2 LINE L2 -376 2937 2685 278 83 0 0 chr3 212740349 212740385 -14784193 + U2 snRNA snRNA 1 36 -152 517 252 258 0 chr3 212740601 212740752 -14783826 + MIR SINE MIR 31 220 -42 2457 78 0 0 chr3 212740938 212741234 -14783344 - AluSq SINE Alu -17 296 1 261 238 63 16 chr3 212742452 212742515 -14782063 - MIR SINE MIR -152 110 45 2090 122 17 0 chr3 212742643 212742937 -14781641 - AluSg SINE Alu -11 299 1 21 57 0 0 chr3 212743912 212743947 -14780631 + AT_rich Low_complexity Low_complexity 1 35 0 428 304 114 36 chr3 212744270 212744490 -14780088 - MIR SINE MIR -9 253 17 2287 101 0 13 chr3 212745823 212746130 -14778448 - AluSq SINE Alu -10 303 1 242 325 57 24 chr3 212746671 212746794 -14777784 + MER5A DNA MER1_type 18 144 -45 1992 159 78 8 chr3 212746802 212747160 -14777418 - L1MD1 LINE L1 0 6242 5860 245 341 44 33 chr3 212747212 212747303 -14777275 + L2 LINE L2 3203 3294 -19 306 268 49 0 chr3 212747319 212747401 -14777177 + L2 LINE L2 3228 3313 0 501 271 84 6 chr3 212747475 212747641 -14776937 + MLT1J1 LTR MaLR 4 182 -264 5465 164 41 23 chr3 212747891 212748593 -14775985 + L1MA10 LINE L1 4818 5506 -828 2410 70 3 3 chr3 212748593 212748892 -14775686 + AluY SINE Alu 1 299 -12 5465 164 41 23 chr3 212748892 212749149 -14775429 + L1MA10 LINE L1 5506 5757 -577 1784 184 0 16 chr3 212749149 212749453 -14775125 + AluJo SINE Alu 5 303 -9 5465 164 41 23 chr3 212749453 212749920 -14774658 + L1MA10 LINE L1 5757 6283 -51 333 295 48 66 chr3 212749963 212750129 -14774449 + MLT1I LTR MaLR 198 360 -49 444 273 34 57 chr3 212750188 212750364 -14774214 + MLT1J2 LTR MaLR 279 450 0 207 342 66 0 chr3 212750484 212750560 -14774018 + L2 LINE L2 3140 3220 -52 824 183 0 8 chr3 212750866 212750992 -14773586 + FLAM_C SINE Alu 2 126 -17 321 333 90 40 chr3 212751870 212752047 -14772531 + L3 LINE CR1 903 1088 -489 350 262 152 19 chr3 212752061 212752184 -14772394 - L1ME4a LINE L1 -1 6120 6015 2303 110 7 0 chr3 212752184 212752493 -14772085 - AluSq SINE Alu -2 311 1 350 262 152 19 chr3 212752493 212752579 -14771999 - L1ME4a LINE L1 -106 6015 5883 30 45 0 0 chr3 212753014 212753058 -14771520 + AT_rich Low_complexity Low_complexity 1 44 0 2378 78 0 10 chr3 212753118 212753424 -14771154 - AluSx SINE Alu -9 303 1 595 288 44 22 chr3 212753460 212753686 -14770892 - MIR SINE MIR 0 262 32 186 339 111 18 chr3 212753707 212753878 -14770700 + L3 LINE CR1 1084 1270 -307 207 163 41 20 chr3 212753932 212753981 -14770597 + L3 LINE CR1 1396 1445 -132 22 0 0 0 chr3 212754383 212754405 -14770173 + GC_rich Low_complexity Low_complexity 1 22 0 531 256 123 24 chr3 212754732 212754960 -14769618 - MIR SINE MIR -12 250 1 274 274 28 66 chr3 212755198 212755304 -14769274 + MIR SINE MIR 19 120 -142 * 572 236 256 4 chr3 212755278 212755524 -14769054 - L2 LINE L2 -18 3295 2988 389 233 10 29 chr3 212755564 212755667 -14768911 - L2 LINE L2 -24 3289 3189 2166 107 7 7 chr3 212755702 212756011 -14768567 + AluSx SINE Alu 1 309 -3 203 216 81 40 chr3 212756043 212756117 -14768461 - L2 LINE L2 -233 3080 3004 518 287 180 3 chr3 212757619 212757908 -14766670 - MARNA DNA Mariner -191 395 56 1515 113 20 0 chr3 212758316 212758544 -14766034 - AluSg/x SINE Alu 0 307 76 686 264 30 25 chr3 212758747 212758944 -14765634 - Charlie8 DNA MER1_type -2154 263 66 235 217 101 101 chr3 212759005 212759143 -14765435 - MIR SINE MIR -47 215 78 2331 93 0 3 chr3 212759361 212759662 -14764916 - AluY SINE Alu -11 300 1 309 26 0 0 chr3 212761346 212761384 -14763194 + (TG)n Simple_repeat Simple_repeat 2 39 0 207 289 0 0 chr3 212761433 212761478 -14763100 + MIR SINE MIR 8 52 -210 916 279 94 42 chr3 212763955 212764886 -14759692 - L1ME3A LINE L1 -104 6049 5070 1007 222 0 0 chr3 212764913 212765080 -14759498 + FAM SINE Alu 1 167 -8 225 278 86 21 chr3 212765257 212765444 -14759134 - L1ME3A LINE L1 -5059 1060 862 21 36 0 0 chr3 212766291 212766319 -14758259 + AT_rich Low_complexity Low_complexity 1 28 0 1261 189 43 12 chr3 212766328 212766582 -14757996 + MIR SINE MIR 1 262 0 369 43 0 0 chr3 212770580 212770627 -14753951 + (TG)n Simple_repeat Simple_repeat 1 47 0 2225 106 0 0 chr3 212772406 212772699 -14751879 + AluSg SINE Alu 3 295 -15 264 111 0 0 chr3 212773339 212773375 -14751203 + MIR SINE MIR 117 152 -110 1438 151 66 44 chr3 212774018 212774335 -14750243 + MER33 DNA MER1_type 1 324 0 585 298 194 38 chr3 212774396 212774866 -14749712 - L3 LINE CR1 -744 833 291 455 248 241 14 chr3 212775052 212775193 -14749385 + MIR SINE MIR 5 177 -85 21 0 0 0 chr3 212775398 212775419 -14749159 + AT_rich Low_complexity Low_complexity 1 21 0 485 280 132 59 chr3 212775621 212775698 -14748880 + L3 LINE CR1 270 340 -1237 2274 106 0 10 chr3 212775698 212776001 -14748577 + AluSx SINE Alu 1 300 -12 485 280 132 59 chr3 212776001 212776280 -14748298 + L3 LINE CR1 340 652 -925 1232 259 86 78 chr3 212776838 212777428 -14747150 - MLT1G1 LTR MaLR 0 595 1 218 65 32 0 chr3 212777957 212777988 -14746590 - L2 LINE L2 -40 3232 3201 2199 87 0 26 chr3 212778152 212778461 -14746117 + AluSg SINE Alu 1 301 -9 2345 146 78 0 chr3 212778801 212779198 -14745380 + MSTC LTR MaLR 1 428 0 1726 111 0 0 chr3 212779208 212779443 -14745135 - AluSq SINE Alu -78 235 1 470 237 301 11 chr3 212780053 212780239 -14744339 + MIR SINE MIR 23 262 0 625 212 9 0 chr3 212780721 212780834 -14743744 - MER81 DNA DNA 0 114 1 202 287 43 0 chr3 212781364 212781458 -14743120 + (TA)n Simple_repeat Simple_repeat 1 98 0 236 98 61 24 chr3 212781477 212781559 -14743019 + (TA)n Simple_repeat Simple_repeat 2 86 0 1151 154 0 0 chr3 212781562 212781737 -14742841 - AluJ SINE Alu -32 280 106 29 0 0 0 chr3 212781809 212781838 -14742740 + AT_rich Low_complexity Low_complexity 1 29 0 842 126 0 8 chr3 212781851 212781978 -14742600 - AluJ SINE Alu -176 126 1 2348 43 3 13 chr3 212782270 212782573 -14742005 - AluY SINE Alu -11 300 1 183 80 0 0 chr3 212783239 212783264 -14741314 + (A)n Simple_repeat Simple_repeat 1 25 0 222 336 47 16 chr3 212783320 212783448 -14741130 - L2 LINE L2 -5 3267 3136 903 166 13 9 chr3 212783572 212783802 -14740776 + CT-rich Low_complexity Low_complexity 1 231 0 2041 130 0 3 chr3 212783802 212784103 -14740475 - AluSq SINE Alu -9 304 5 1533 164 0 35 chr3 212784111 212784423 -14740155 - AluSg SINE Alu -9 301 1 315 0 0 0 chr3 212784938 212784973 -14739605 + (TG)n Simple_repeat Simple_repeat 2 36 0 2007 111 0 16 chr3 212786207 212786522 -14738056 + AluSq SINE Alu 1 310 -3 814 108 19 13 chr3 212787028 212787185 -14737393 + (TTCC)n Simple_repeat Simple_repeat 4 161 0 299 230 82 96 chr3 212787210 212787345 -14737233 - FLAM_A SINE Alu 0 133 1 1534 205 7 0 chr3 212787437 212787734 -14736844 - AluJb SINE Alu -13 299 1 2240 90 7 0 chr3 212787745 212788045 -14736533 - AluSx SINE Alu -9 303 2 1430 133 0 0 chr3 212788635 212788846 -14735732 + AluSg/x SINE Alu 86 296 -16 391 237 97 0 chr3 212788846 212788939 -14735639 - MER45 DNA AcHobo -938 102 1 380 293 102 0 chr3 212789423 212789570 -14735008 - MIR SINE MIR -23 239 78 2043 122 0 3 chr3 212789734 212790030 -14734548 + AluSc SINE Alu 6 300 -9 2205 83 7 3 chr3 212791468 212791769 -14732809 - AluSc SINE Alu -6 303 2 334 231 9 83 chr3 212792024 212792132 -14732446 + L2 LINE L2 3171 3270 -2 650 227 139 63 chr3 212793658 212794078 -14730500 - L1ME4a LINE L1 -5 6116 5652 2210 108 0 3 chr3 212794078 212794385 -14730193 - AluY SINE Alu -5 306 1 650 227 139 63 chr3 212794385 212794453 -14730125 - L1ME4a LINE L1 -469 5652 5591 1868 93 65 7 chr3 212796423 212796702 -14727876 - AluSx SINE Alu -17 295 1 2112 104 0 3 chr3 212797197 212797485 -14727093 - AluSq SINE Alu -26 287 1 26 0 0 0 chr3 212798049 212798075 -14726503 + AT_rich Low_complexity Low_complexity 1 26 0 282 272 0 39 chr3 212798161 212798264 -14726314 + CT-rich Low_complexity Low_complexity 4 102 0 193 296 144 40 chr3 212798954 212799025 -14725553 + L2 LINE L2 3172 3234 -79 411 190 13 0 chr3 212799025 212799104 -14725474 + MER116 DNA Mariner 1 80 0 193 296 144 40 chr3 212799104 212799157 -14725421 + L2 LINE L2 3234 3309 -4 186 118 0 0 chr3 212799456 212799490 -14725088 + (A)n Simple_repeat Simple_repeat 1 34 0 252 284 106 71 chr3 212799512 212799653 -14724925 + MIR SINE MIR 117 262 0 341 316 88 48 chr3 212801246 212801474 -14723104 + L3 LINE CR1 1084 1320 -257 2098 113 0 0 chr3 212801873 212802166 -14722412 + AluSc SINE Alu 1 293 -16 659 156 85 43 chr3 212802184 212802325 -14722253 + FRAM SINE Alu 10 156 -20 424 215 147 26 chr3 212802325 212802516 -14722062 - L1ME4a LINE L1 -86 6035 5822 2121 113 0 6 chr3 212802523 212802834 -14721744 + AluSc SINE Alu 1 309 0 321 274 64 25 chr3 212802860 212803017 -14721561 - L1ME4a LINE L1 -423 5698 5536 2337 133 80 0 chr3 212803816 212804035 -14720543 - MSTB1 LTR MaLR 0 432 232 186 43 0 0 chr3 212804035 212804058 -14720520 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 2337 133 80 0 chr3 212804058 212804238 -14720340 - MSTB1 LTR MaLR -200 232 1 266 204 226 43 chr3 212804730 212804823 -14719755 - L2 LINE L2 -5 3267 3158 2153 112 0 0 chr3 212805443 212805739 -14718839 + AluSx SINE Alu 1 296 -16 299 295 81 20 chr3 212806072 212806221 -14718357 - MIR SINE MIR -69 193 36 2644 60 0 23 chr3 212806352 212806701 -14717877 + L1PA5 LINE L1 5813 6153 -1 190 353 88 0 chr3 212807440 212807508 -14717070 - L2 LINE L2 -45 3227 3154 485 296 144 53 chr3 212807710 212808065 -14716513 - L3 LINE CR1 -45 1532 1146 1847 81 59 22 chr3 212808686 212808989 -14715589 - AluSq SINE Alu 0 313 1 610 297 42 31 chr3 212809105 212809334 -14715244 + MIR SINE MIR 20 250 -12 2128 101 10 0 chr3 212809341 212809639 -14714939 - AluSx SINE Alu -11 301 1 380 293 102 0 chr3 212809794 212809941 -14714637 + MIR SINE MIR 78 239 -23 391 237 97 0 chr3 212810425 212810518 -14714060 + MER45 DNA AcHobo 1 102 -938 1430 133 0 0 chr3 212810518 212810729 -14713849 - AluSg/x SINE Alu -16 294 84 303 229 16 0 chr3 212810731 212810792 -14713786 + MER45 DNA AcHobo 1517 1578 -3 2205 90 7 3 chr3 212811319 212811620 -14712958 + AluSx SINE Alu 2 303 -9 1534 205 7 0 chr3 212811631 212811928 -14712650 + AluJb SINE Alu 1 299 -13 299 230 82 96 chr3 212812020 212812155 -14712423 + FLAM_A SINE Alu 1 133 0 814 108 19 13 chr3 212812180 212812337 -14712241 + (GGAA)n Simple_repeat Simple_repeat 4 161 0 2007 111 0 16 chr3 212812843 212813158 -14711420 - AluSq SINE Alu -3 310 1 315 0 0 0 chr3 212814392 212814427 -14710151 + (CA)n Simple_repeat Simple_repeat 2 36 0 1533 164 0 35 chr3 212814941 212815253 -14709325 + AluSg SINE Alu 1 301 -9 2041 130 0 3 chr3 212815261 212815562 -14709016 + AluSq SINE Alu 5 304 -9 903 166 13 9 chr3 212815562 212815792 -14708786 + GA-rich Low_complexity Low_complexity 1 231 0 222 336 47 16 chr3 212815916 212816044 -14708534 + L2 LINE L2 3136 3267 -5 183 80 0 0 chr3 212816100 212816125 -14708453 + (T)n Simple_repeat Simple_repeat 1 25 0 2390 43 0 13 chr3 212816792 212817096 -14707482 + AluY SINE Alu 1 300 -11 842 126 0 8 chr3 212817388 212817515 -14707063 + AluJ SINE Alu 1 126 -176 29 0 0 0 chr3 212817528 212817557 -14707021 + AT_rich Low_complexity Low_complexity 1 29 0 1151 154 0 0 chr3 212817629 212817804 -14706774 + AluJ SINE Alu 106 280 -32 387 108 78 12 chr3 212817807 212817974 -14706604 + (TA)n Simple_repeat Simple_repeat 2 179 0 29 0 0 0 chr3 212817974 212818003 -14706575 + AT_rich Low_complexity Low_complexity 1 29 0 625 212 9 0 chr3 212818541 212818654 -14705924 + MER81 DNA DNA 1 114 0 470 237 301 11 chr3 212819136 212819322 -14705256 - MIR SINE MIR 0 262 23 1726 111 0 0 chr3 212819932 212820167 -14704411 + AluSq SINE Alu 1 235 -78 2362 147 81 0 chr3 212820177 212820573 -14704005 - MSTC LTR MaLR 0 428 1 2199 87 0 26 chr3 212820913 212821222 -14703356 - AluSg SINE Alu -9 301 1 218 65 32 0 chr3 212821386 212821417 -14703161 + L2 LINE L2 3201 3232 -40 1062 264 85 76 chr3 212821946 212822536 -14702042 + MLT1G1 LTR MaLR 1 595 0 521 289 122 66 chr3 212823094 212823373 -14701205 - L3 LINE CR1 -925 652 341 2162 106 0 10 chr3 212823373 212823676 -14700902 - AluSx SINE Alu -12 300 1 521 289 122 66 chr3 212823676 212823807 -14700771 - L3 LINE CR1 -1236 341 219 21 0 0 0 chr3 212823955 212823976 -14700602 + AT_rich Low_complexity Low_complexity 1 21 0 467 234 248 21 chr3 212824180 212824321 -14700257 - MIR SINE MIR -85 177 5 659 304 194 38 chr3 212824507 212824977 -14699601 + L3 LINE CR1 291 833 -744 1334 151 66 44 chr3 212825038 212825355 -14699223 - MER33 DNA MER1_type 0 324 1 1012 58 0 0 chr3 212926063 212926183 -14598395 - AluSp SINE Alu -193 120 1 2097 103 0 11 chr3 212926497 212926778 -14597800 + AluSg SINE Alu 1 278 -32 337 237 79 0 chr3 212926784 212926860 -14597718 - MIR SINE MIR -156 106 25 747 348 117 22 chr3 212927288 212927782 -14596796 - L3 LINE CR1 -17 1560 1020 815 281 25 0 chr3 212927931 212928169 -14596409 - AluSx SINE Alu -45 267 24 818 155 21 7 chr3 212928363 212928505 -14596073 + AluJb SINE Alu 157 300 -12 28 61 0 0 chr3 212928506 212928555 -14596023 + AT_rich Low_complexity Low_complexity 1 49 0 1895 139 17 24 chr3 212928568 212928863 -14595715 - AluSx SINE Alu -19 293 1 2460 66 7 16 chr3 212928877 212929182 -14595396 - AluY SINE Alu -9 302 1 363 256 92 55 chr3 212929200 212929364 -14595214 + L3 LINE CR1 1341 1510 -67 269 350 69 40 chr3 212929470 212929744 -14594834 - L2 LINE L2 -79 3193 2912 351 200 29 14 chr3 212929774 212929844 -14594734 + MIR SINE MIR 92 162 -100 1440 110 5 0 chr3 212929884 212930075 -14594503 - AluSg/x SINE Alu -12 300 109 2138 126 3 0 chr3 212929889 212930183 -14594395 - AluSx SINE Alu -17 295 1 396 321 10 72 chr3 212930186 212930395 -14594183 - MIR SINE MIR -62 200 5 255 174 0 0 chr3 212930397 212930443 -14594135 + MIR SINE MIR 217 262 0 362 256 18 89 chr3 212930921 212931089 -14593489 - L2 LINE L2 0 3313 3158 777 192 64 21 chr3 212931582 212931816 -14592762 + AluSq SINE Alu 2 245 -68 3192 58 12 10 chr3 212931939 212932349 -14592229 + L1PA10 LINE L1 5758 6168 0 214 295 26 0 chr3 212932353 212932431 -14592147 + MIR SINE MIR 106 185 -77 1685 303 123 19 chr3 212932438 212933523 -14591055 - L2 LINE L2 -4 3309 2120 957 81 0 0 chr3 212933548 212933672 -14590906 + AluSg/x SINE Alu 186 309 0 2144 122 0 0 chr3 212933705 212933992 -14590586 + AluSx SINE Alu 9 295 -17 403 310 31 8 chr3 212935409 212935538 -14589040 - MIR SINE MIR -58 150 19 1749 174 24 3 chr3 212935617 212935910 -14588668 + AluJb SINE Alu 2 300 -12 284 168 11 137 chr3 212936006 212936101 -14588477 - MER33 DNA MER1_type 0 363 281 812 100 73 0 chr3 212936101 212936211 -14588367 + AluJb SINE Alu 1 118 -194 26 30 0 0 chr3 212936214 212936247 -14588331 + AT_rich Low_complexity Low_complexity 1 33 0 311 297 0 0 chr3 212936290 212936354 -14588224 - Tigger2 DNA MER2_type -12 2706 2643 2227 127 62 5 chr3 212936385 212936756 -14587822 - Tigger2 DNA MER2_type -54 2664 2273 229 151 302 0 chr3 212936746 212936799 -14587779 - Tigger2 DNA MER2_type -2649 69 1 * 716 182 166 5 chr3 212936799 212936984 -14587594 - MER33 DNA MER1_type -109 215 1 392 291 61 7 chr3 212936984 212937132 -14587446 - MIR SINE MIR -46 216 61 2305 72 3 23 chr3 212937550 212937854 -14586724 - AluY SINE Alu -13 298 1 1049 106 0 14 chr3 212937854 212937996 -14586582 - AluY SINE Alu -171 140 1 675 126 0 45 chr3 212938197 212938308 -14586270 - THE1C LTR MaLR 0 375 270 540 200 0 0 chr3 212938477 212938582 -14585996 - FLAM_C SINE Alu -37 106 2 530 208 78 83 chr3 212938632 212938824 -14585754 + MLT1J LTR MaLR 5 195 -316 354 253 62 82 chr3 212939736 212939872 -14584706 + MIR SINE MIR 16 148 -114 2372 94 7 0 chr3 212939872 212940179 -14584399 + AluSg SINE Alu 1 309 -1 354 253 62 82 chr3 212940179 212940236 -14584342 + MIR SINE MIR 148 205 -57 203 381 55 39 chr3 212940240 212940550 -14584028 + L2 LINE L2 2831 3145 -127 2309 106 0 3 chr3 212940619 212940920 -14583658 + AluSx SINE Alu 3 302 -10 234 205 0 0 chr3 212940929 212940968 -14583610 + MER21A LTR ERV1 226 264 -667 2957 139 69 30 chr3 212940970 212941509 -14583069 + MER21A LTR ERV1 372 931 0 1818 184 40 75 chr3 212941544 212942059 -14582519 - MER4D LTR ERV1 -225 666 62 1569 154 32 14 chr3 212942051 212942331 -14582247 - MER49 LTR ERV1 -638 285 1 * 576 276 89 31 chr3 212942331 212942624 -14581954 + L2 LINE L2 3003 3312 -1 3407 52 5 5 chr3 212942631 212943058 -14581520 + L1PA4 LINE L1 5729 6155 0 239 114 23 0 chr3 212943203 212943247 -14581331 + (TA)n Simple_repeat Simple_repeat 2 46 0 2207 102 7 3 chr3 212943248 212943552 -14581026 - AluY SINE Alu -6 305 1 325 289 116 16 chr3 212943619 212943809 -14580769 - MIR SINE MIR -14 248 40 203 159 0 23 chr3 212944266 212944310 -14580268 - L2 LINE L2 -1 3312 3270 2276 111 0 0 chr3 212944537 212944843 -14579735 - AluSx SINE Alu -5 307 2 346 338 74 23 chr3 212944863 212945162 -14579416 - L2 LINE L2 -590 2724 2411 908 211 6 6 chr3 212945170 212945331 -14579247 + Tigger7 DNA MER2_type 10 170 -380 299 98 0 0 chr3 212945335 212945376 -14579202 + Tigger7 DNA MER2_type 2209 2249 -238 4142 228 42 20 chr3 212945376 212946958 -14577620 + L1MB3 LINE L1 4267 5890 -278 288 0 0 0 chr3 212946958 212946990 -14577588 + (CA)n Simple_repeat Simple_repeat 1 32 0 1207 133 5 19 chr3 212947001 212947212 -14577366 + L1MB3 LINE L1 5967 6174 -9 2406 82 10 0 chr3 212948200 212948492 -14576086 + AluSg SINE Alu 1 295 -15 1093 260 102 60 chr3 212948645 212948771 -14575807 + L1MC4a LINE L1 5371 5490 -2318 2007 159 3 0 chr3 212948771 212949072 -14575506 + AluJb SINE Alu 1 302 -10 1093 260 102 60 chr3 212949072 212949317 -14575261 + L1MC4a LINE L1 5490 5723 -2085 2341 77 0 26 chr3 212949317 212949652 -14574926 + AluY SINE Alu 1 327 0 1093 260 102 60 chr3 212949652 212949842 -14574736 + L1MC4a LINE L1 5723 5960 -1848 1181 131 4 102 chr3 212949935 212949989 -14574589 - MLT1B LTR MaLR -5 385 327 8637 43 2 0 chr3 212949989 212950956 -14573622 + LTR5 LTR ERVK 1 969 0 1181 131 4 102 chr3 212950956 212951145 -14573433 - MLT1B LTR MaLR -63 327 166 2042 122 0 3 chr3 212951146 212951432 -14573146 - AluSx SINE Alu -14 298 14 2307 96 7 0 chr3 212951659 212951951 -14572627 - AluSq SINE Alu -19 294 1 1597 129 50 0 chr3 212951986 212952227 -14572351 + MER9 LTR ERVK 1 253 -258 468 269 159 48 chr3 212952560 212952932 -14571646 + LTR16A LTR ERVL 14 426 -24 230 368 30 6 chr3 212953248 212953414 -14571164 + L2 LINE L2 2686 2855 -459 258 169 0 31 chr3 212953826 212953891 -14570687 + HERVS71 LTR ERV1 8911 8973 -5 2274 182 36 70 chr3 212953891 212954473 -14570105 + LTR6A LTR ERV1 3 564 0 2355 89 0 10 chr3 212954735 212955038 -14569540 - AluSc SINE Alu -9 300 1 929 110 16 0 chr3 212955383 212955510 -14569068 + AluSx SINE Alu 1 129 -184 243 171 40 0 chr3 212955512 212955588 -14568990 + (TA)n Simple_repeat Simple_repeat 2 80 0 1075 138 54 0 chr3 212955595 212955762 -14568816 + AluSx SINE Alu 127 302 -10 305 347 107 20 chr3 212955888 212956280 -14568298 + L2 LINE L2 1962 2387 -927 1543 167 20 52 chr3 212956380 212956685 -14567893 - AluJo SINE Alu -17 295 1 570 218 35 0 chr3 212956706 212956848 -14567730 - Charlie1 DNA MER1_type -1 2760 2614 38 0 0 0 chr3 212957359 212957397 -14567181 + AT_rich Low_complexity Low_complexity 1 38 0 4047 176 36 125 chr3 212957448 212958006 -14566572 - Charlie1 DNA MER1_type -171 2590 1984 1781 204 46 32 chr3 212958006 212958467 -14566111 - MLT1C LTR MaLR 0 467 1 4047 176 36 125 chr3 212958467 212958951 -14565627 - Charlie1 DNA MER1_type -777 1984 1459 1758 176 0 17 chr3 212958951 212959246 -14565332 + AluJb SINE Alu 5 294 -18 4047 176 36 125 chr3 212959246 212959558 -14565020 - Charlie1 DNA MER1_type -1302 1459 45 283 309 79 12 chr3 212959646 212959811 -14564767 + L2 LINE L2 2612 2787 -527 276 298 99 25 chr3 212959869 212960030 -14564548 + L2 LINE L2 2871 3043 -229 1151 154 0 11 chr3 212960124 212960306 -14564272 - AluSx SINE Alu -12 300 121 33546 97 13 62 chr3 212960310 212966772 -14557806 - L1PA7 LINE L1 -10 6144 12 1036 98 0 0 chr3 212966785 212966918 -14557660 - AluSx SINE Alu -179 133 1 186 237 119 0 chr3 212966975 212967034 -14557544 - MIR SINE MIR -1 261 196 2210 116 3 7 chr3 212967128 212967453 -14557125 - AluSp SINE Alu 0 313 1 2092 133 7 0 chr3 212967455 212967749 -14556829 - AluSx SINE Alu -16 296 1 255 230 94 41 chr3 212967893 212968088 -14556490 - HAL1b LINE L1 -42 1306 1040 1862 141 30 7 chr3 212968088 212968386 -14556192 + AluSg SINE Alu 3 307 -3 255 230 94 41 chr3 212968386 212968431 -14556147 - HAL1b LINE L1 -308 1040 999 1066 91 0 0 chr3 212968555 212968687 -14555891 + AluY SINE Alu 1 132 -179 1667 43 0 0 chr3 212968793 212968981 -14555597 - AluY SINE Alu -123 188 1 315 382 65 40 chr3 212969005 212969327 -14555251 - HAL1b LINE L1 -938 410 81 2749 13 0 13 chr3 212969795 212970101 -14554477 + AluYa5 SINE Alu 2 303 -8 356 205 26 103 chr3 212970634 212970751 -14553827 - L1ME LINE L1 -4734 1650 1543 688 27 45 18 chr3 212970753 212970864 -14553714 + (TTTC)n Simple_repeat Simple_repeat 3 116 0 1843 267 100 46 chr3 212970866 212970910 -14553668 - L1ME LINE L1 -4719 1663 1623 2181 123 13 0 chr3 212970910 212971210 -14553368 - AluSx SINE Alu -8 304 1 1843 267 100 46 chr3 212971210 212972496 -14552082 - L1ME LINE L1 -4759 1623 306 201 294 63 28 chr3 212972608 212972751 -14551827 + MIR SINE MIR 90 237 -25 202 276 17 0 chr3 212972786 212972844 -14551734 + L2 LINE L2 3214 3272 0 293 167 0 0 chr3 212973560 212973614 -14550964 + L1MB4 LINE L1 6127 6180 0 306 264 138 30 chr3 212973712 212974008 -14550570 - L1ME4a LINE L1 -122 5999 5672 205 371 0 21 chr3 212974024 212974121 -14550457 + L2 LINE L2 2959 3053 -219 366 310 182 0 chr3 212974282 212974469 -14550109 - MIR SINE MIR -16 246 26 2427 90 0 0 chr3 212975136 212975437 -14549141 - AluSx SINE Alu -9 303 3 2429 86 0 10 chr3 212975934 212976247 -14548331 - AluSg SINE Alu 0 310 1 2253 85 3 0 chr3 212976561 212976887 -14547691 + AluSp SINE Alu 1 327 0 368 286 95 12 chr3 212977173 212977341 -14547237 + MIR SINE MIR 8 189 -73 433 257 18 9 chr3 212977870 212977979 -14546599 + MIR SINE MIR 37 146 -62 381 292 56 25 chr3 212979885 212980046 -14544532 + MER5B DNA MER1_type 12 177 -1 287 323 32 38 chr3 212980046 212980203 -14544375 - MIR3 SINE MIR -47 161 6 2358 84 7 0 chr3 212980375 212980672 -14543906 + AluSx SINE Alu 5 303 -9 684 226 0 0 chr3 212980683 212980816 -14543762 + AluJo/FLAM SINE Alu 1 133 -169 844 185 0 25 chr3 212980816 212980845 -14543733 + AluJb SINE Alu 2 158 -154 * 1039 83 14 7 chr3 212980831 212980976 -14543602 - AluSq SINE Alu -151 162 17 260 254 0 0 chr3 212980980 212981043 -14543535 + L1ME4a LINE L1 5732 5794 -2014 919 239 84 17 chr3 212981044 212981115 -14543463 - MIR SINE MIR -2 260 195 2067 115 0 7 chr3 212981115 212981411 -14543167 - AluSx SINE Alu -18 294 1 919 239 84 17 chr3 212981411 212981578 -14543000 - MIR SINE MIR -67 195 6 236 195 65 52 chr3 212981688 212981765 -14542813 + L1ME4a LINE L1 5845 5922 -199 330 294 82 14 chr3 212981777 212981923 -14542655 + L1ME4a LINE L1 5964 6119 -2 944 189 40 0 chr3 212982764 212982939 -14541639 - MSTC LTR MaLR -51 377 196 495 0 0 0 chr3 212982977 212983032 -14541546 + (TA)n Simple_repeat Simple_repeat 1 55 0 1879 188 5 37 chr3 212983450 212983669 -14540909 - MLT1A1 LTR MaLR 0 365 161 2030 125 0 13 chr3 212983669 212983998 -14540580 - AluSq SINE Alu 0 313 1 1879 188 5 37 chr3 212983998 212984155 -14540423 - MLT1A1 LTR MaLR -204 161 1 1857 70 4 23 chr3 212984625 212984882 -14539696 - AluY SINE Alu -59 252 1 990 106 0 14 chr3 212984882 212985024 -14539554 - AluY SINE Alu -171 140 1 201 280 0 0 chr3 212985134 212985184 -14539394 + MIR SINE MIR 118 167 -95 1760 123 70 64 chr3 212985225 212985598 -14538980 - THE1C LTR MaLR 0 375 1 336 328 133 17 chr3 212985641 212985821 -14538757 + L2 LINE L2 2555 2755 -559 434 310 107 11 chr3 212985940 212986127 -14538451 - MIR SINE MIR -20 242 38 181 189 27 0 chr3 212986519 212986556 -14538022 + L3 LINE CR1 1515 1552 -25 261 292 0 22 chr3 212986873 212986962 -14537616 - MIR SINE MIR -116 146 60 21 0 0 0 chr3 212987627 212987648 -14536930 + GC_rich Low_complexity Low_complexity 1 21 0 22 0 0 0 chr3 212987694 212987716 -14536862 + GC_rich Low_complexity Low_complexity 1 22 0 361 271 52 39 chr3 212988959 212989114 -14535464 - MIR3 SINE MIR -28 180 24 2893 161 20 11 chr3 212989736 212990268 -14534310 + LTR27 LTR ERV1 7 1252 -141 429 309 9 0 chr3 212990381 212990491 -14534087 - MIR3 SINE MIR -27 181 71 229 220 20 0 chr3 212990863 212990913 -14533665 + MIR SINE MIR 97 147 -61 1683 135 3 75 chr3 212991029 212991363 -14533215 + AluJb SINE Alu 1 310 -2 1688 48 5 0 chr3 212991521 212991765 -14532813 - AluY SINE Alu 0 319 75 4672 117 18 11 chr3 212991775 212992484 -14532094 - L1PA13 LINE L1 -2 6161 5448 500 204 138 48 chr3 212993404 212993433 -14531145 - L1ME4a LINE L1 -2 6119 6094 2124 123 7 3 chr3 212993433 212993743 -14530835 + AluSx SINE Alu 1 311 -1 500 204 138 48 chr3 212993743 212993944 -14530634 - L1ME4a LINE L1 -27 6094 5868 189 294 101 59 chr3 212994168 212994287 -14530291 + MIR SINE MIR 22 145 -63 1927 110 7 3 chr3 212994565 212994847 -14529731 + AluSx SINE Alu 1 283 -29 219 69 0 0 chr3 212994847 212994876 -14529702 + (AAATG)n Simple_repeat Simple_repeat 2 30 0 368 237 34 59 chr3 212994886 212995004 -14529574 - L1ME4a LINE L1 -437 5684 5570 691 307 33 9 chr3 212995066 212995278 -14529300 + MIR SINE MIR 46 262 0 383 271 128 16 chr3 212995466 212995654 -14528924 - L1MC5 LINE L1 -28 7933 7725 1949 112 20 16 chr3 212995843 212996147 -14528431 - AluJb SINE Alu -7 305 1 223 366 9 36 chr3 212996210 212996322 -14528256 + MIR3 SINE MIR 11 119 -89 315 276 71 81 chr3 212997146 212997260 -14527318 - L1MC4a LINE L1 -111 6010 5896 1530 107 31 5 chr3 212997260 212997484 -14527094 - MER30 DNA MER1_type 0 230 1 315 276 71 81 chr3 212997484 212997652 -14526926 - L1MC4a LINE L1 -225 5896 5729 709 309 107 55 chr3 212998084 212998505 -14526073 + L3 LINE CR1 1026 1481 -96 2299 74 0 0 chr3 212998505 212998801 -14525777 + AluY SINE Alu 1 296 -15 709 309 107 55 chr3 212998801 212998903 -14525675 + L3 LINE CR1 1481 1576 -1 388 342 38 6 chr3 212999457 212999615 -14524963 - MIR SINE MIR -12 250 88 1112 120 0 0 chr3 212999617 212999775 -14524803 - AluSq SINE Alu -153 160 3 297 364 83 39 chr3 212999816 213000154 -14524424 - L2 LINE L2 -89 3183 2831 429 253 62 82 chr3 213000158 213000215 -14524363 - MIR SINE MIR -57 205 148 2263 91 7 0 chr3 213000215 213000522 -14524056 - AluSg SINE Alu -1 309 1 429 253 62 82 chr3 213000522 213000658 -14523920 - MIR SINE MIR -114 148 16 549 199 66 76 chr3 213001565 213001762 -14522816 - MLT1J LTR MaLR -246 189 5 1531 164 45 10 chr3 213001811 213002103 -14522475 + AluJo SINE Alu 1 302 -10 562 271 169 23 chr3 213002104 213002454 -14522124 + HAL1b LINE L1 462 862 -486 2302 72 7 16 chr3 213002479 213002786 -14521792 + AluY SINE Alu 1 304 -7 1957 95 20 24 chr3 213002799 213003093 -14521485 + AluSx SINE Alu 1 293 -19 34 65 0 0 chr3 213003106 213003168 -14521410 + AT_rich Low_complexity Low_complexity 1 62 0 816 200 13 0 chr3 213003168 213003318 -14521260 - AluJb SINE Alu -24 288 137 305 301 108 24 chr3 213003369 213003535 -14521043 + HAL1b LINE L1 1164 1343 -5 260 211 53 0 chr3 213003975 213004032 -14520546 - MIR SINE MIR -85 177 118 337 175 0 0 chr3 213004049 213004106 -14520472 + U6 snRNA snRNA 1 57 -50 341 289 70 32 chr3 213004434 213004590 -14519988 + MIR SINE MIR 59 220 -42 459 35 0 0 chr3 213005303 213005360 -14519218 + (TG)n Simple_repeat Simple_repeat 1 57 0 478 301 116 5 chr3 213006492 213006708 -14517870 + MIR SINE MIR 20 259 -3 289 297 99 0 chr3 213006741 213006852 -14517726 - L2 LINE L2 -18 3254 3133 245 203 109 0 chr3 213007681 213007745 -14516833 - MIR SINE MIR -12 250 180 * 1021 281 44 28 chr3 213007739 213007839 -14516739 + L2 LINE L2 1117 1214 -2100 1726 123 62 17 chr3 213007839 213008131 -14516447 - AluSq SINE Alu -8 305 1 1021 281 44 28 chr3 213008131 213008199 -14516379 + L2 LINE L2 1214 1279 -2035 305 316 35 29 chr3 213008199 213008373 -14516205 + MER5B DNA MER1_type 1 175 -3 1021 281 44 28 chr3 213008373 213008520 -14516058 + L2 LINE L2 1279 1438 -1876 1279 219 4 0 chr3 213008525 213008758 -14515820 - MLT1A1 LTR MaLR 0 365 132 1050 144 33 6 chr3 213008759 213008939 -14515639 - MSTB1 LTR MaLR 0 432 248 2568 277 92 82 chr3 213008950 213009261 -14515317 + L2 LINE L2 1776 2082 -1231 790 78 0 0 chr3 213009261 213009391 -14515187 - AluSg/x SINE Alu 0 315 186 2568 277 92 82 chr3 213009391 213010502 -14514076 + L2 LINE L2 2082 3309 -4 297 260 19 143 chr3 213010509 213010593 -14513985 - MIR SINE MIR -77 185 127 6792 75 5 13 chr3 213010593 213012269 -14512309 - L1PA10 LINE L1 0 6168 4498 2216 101 0 7 chr3 213012269 213012575 -14512003 - AluSc SINE Alu -5 304 1 6792 75 5 13 chr3 213012575 213012758 -14511820 - L1PA10 LINE L1 -1670 4498 4315 297 260 19 143 chr3 213012758 213012827 -14511751 - MIR SINE MIR -135 127 51 497 174 128 9 chr3 213013007 213013116 -14511462 + MER46C DNA MER2_type 8 129 -209 2695 270 87 29 chr3 213013278 213013936 -14510642 + HAL1 LINE L1 536 1290 -1217 1758 159 3 29 chr3 213013936 213014251 -14510327 + AluJb SINE Alu 2 308 -4 2695 270 87 29 chr3 213014251 213014747 -14509831 + HAL1 LINE L1 1290 1756 -751 1209 240 63 96 chr3 213014754 213015433 -14509145 + HAL1 LINE L1 1846 2502 -5 2077 95 0 3 chr3 213015445 213015771 -14508807 + AluSx SINE Alu 2 326 0 402 212 191 37 chr3 213016105 213016294 -14508284 + MIR SINE MIR 31 248 -14 28 29 0 0 chr3 213017539 213017574 -14507004 + AT_rich Low_complexity Low_complexity 1 35 0 1963 121 7 26 chr3 213017744 213018050 -14506528 - AluSx SINE Alu -12 300 1 391 264 36 129 chr3 213019307 213019693 -14504885 + L1ME4a LINE L1 5501 5850 -271 304 280 136 0 chr3 213019742 213019867 -14504711 + L1ME4a LINE L1 5964 6105 -16 1147 44 0 0 chr3 213020007 213020144 -14504434 - AluSp/q SINE Alu -21 292 156 195 42 0 0 chr3 213021049 213021073 -14503505 + (CA)n Simple_repeat Simple_repeat 2 25 0 408 225 54 27 chr3 213021473 213021584 -14502994 - MER63 DNA MER1_type -314 748 44 186 317 0 0 chr3 213021607 213021667 -14502911 + MIR SINE MIR 81 140 -68 271 246 64 64 chr3 213022293 213022403 -14502175 - MIR3 SINE MIR 0 208 99 2068 104 3 7 chr3 213022677 213022974 -14501604 - AluSx SINE Alu -16 296 1 404 284 116 16 chr3 213023041 213023231 -14501347 - MIR SINE MIR -14 248 40 180 263 88 53 chr3 213023459 213023573 -14501005 - MIR3 SINE MIR -22 186 69 225 159 0 23 chr3 213023688 213023732 -14500846 - L2 LINE L2 -1 3312 3270 2116 121 0 0 chr3 213023959 213024266 -14500312 - AluSx SINE Alu -5 307 1 180 295 63 32 chr3 213024465 213024560 -14500018 - MIR3 SINE MIR -7 201 104 301 295 239 0 chr3 213024914 213025115 -14499463 + MIR SINE MIR 15 260 -2 2875 206 60 59 chr3 213025133 213025815 -14498763 - L1ME1 LINE L1 -6 6160 5473 2210 103 0 3 chr3 213025815 213026127 -14498451 - AluSx SINE Alu -1 311 1 2875 206 60 59 chr3 213026127 213026400 -14498178 - L1ME1 LINE L1 -693 5473 5202 292 344 80 12 chr3 213026465 213026628 -14497950 - L2 LINE L2 -181 3091 2918 200 217 101 43 chr3 213026664 213026733 -14497845 + MIR SINE MIR 15 87 -175 2862 231 98 32 chr3 213026736 213026979 -14497599 - L1MD2 LINE L1 0 6359 6133 2061 114 0 29 chr3 213026979 213027295 -14497283 - AluY SINE Alu -2 309 3 2862 231 98 32 chr3 213027295 213027871 -14496707 - L1MD2 LINE L1 -226 6133 5474 1949 104 0 30 chr3 213027871 213028168 -14496410 - AluSq SINE Alu -21 292 5 2862 231 98 32 chr3 213028168 213028242 -14496336 - L1MD2 LINE L1 -885 5474 5406 829 226 173 0 chr3 213028797 213029005 -14495573 - MIR SINE MIR -16 246 3 1974 129 0 10 chr3 213029014 213029324 -14495254 - AluSx SINE Alu -5 307 1 242 244 0 77 chr3 213029410 213029488 -14495090 + L2 LINE L2 3201 3272 0 2216 102 0 0 chr3 213029816 213030110 -14494468 - AluSq SINE Alu -19 294 1 272 264 42 0 chr3 213030374 213030446 -14494132 + MIR SINE MIR 116 190 -72 272 302 49 121 chr3 213030607 213030872 -14493706 - L2 LINE L2 0 3272 3027 566 229 14 21 chr3 213031228 213031368 -14493210 - L1MB7 LINE L1 -2 6182 6044 251 294 54 11 chr3 213032866 213032958 -14491620 - MIR3 SINE MIR -43 165 70 305 343 33 6 chr3 213033137 213033194 -14491384 - MIR SINE MIR -12 250 196 2019 148 0 0 chr3 213033194 213033504 -14491074 - AluSx SINE Alu -2 310 1 305 343 33 6 chr3 213033504 213033627 -14490951 - MIR SINE MIR -66 196 62 310 255 85 0 chr3 213033651 213033745 -14490833 - L2 LINE L2 0 3313 3212 499 252 35 88 chr3 213034575 213034706 -14489872 - MIR SINE MIR -10 252 135 2365 78 10 0 chr3 213034706 213035014 -14489564 + AluSx SINE Alu 1 311 -1 499 252 35 88 chr3 213035014 213035136 -14489442 - MIR SINE MIR -127 135 8 304 296 133 22 chr3 213035557 213035783 -14488795 + L2 LINE L2 2839 3089 -183 631 268 18 0 chr3 213036694 213036858 -14487720 - MIR SINE MIR -16 246 80 295 340 32 3 chr3 213036914 213037087 -14487491 - MER5A DNA MER1_type 0 178 2 1823 89 26 60 chr3 213037256 213037558 -14487020 + AluSc SINE Alu 5 296 -13 249 273 124 50 chr3 213037558 213037679 -14486899 + L3 LINE CR1 1333 1462 -115 1120 206 113 29 chr3 213037865 213038209 -14486369 - MER93b LTR ERV1 0 373 1 380 252 98 79 chr3 213038719 213038933 -14485645 - MIR SINE MIR -44 218 1 2146 93 0 0 chr3 213039466 213039756 -14484822 - AluSq SINE Alu -23 290 1 315 284 0 37 chr3 213039940 213040021 -14484557 - L2 LINE L2 -1 3271 3194 416 293 187 15 chr3 213040406 213040604 -14483974 - MIR SINE MIR -1 261 30 1610 269 95 67 chr3 213040669 213041485 -14483093 + L2 LINE L2 2221 3013 -300 1129 94 0 11 chr3 213041485 213041665 -14482913 + (TTCC)n Simple_repeat Simple_repeat 3 180 0 2064 141 0 0 chr3 213041671 213041983 -14482595 - AluSx SINE Alu 0 312 1 1610 269 95 67 chr3 213041983 213042217 -14482361 + L2 LINE L2 3017 3311 -2 1606 147 7 38 chr3 213042286 213042579 -14481999 + AluJb SINE Alu 29 312 0 234 0 0 0 chr3 213043231 213043257 -14481321 + (CCA)n Simple_repeat Simple_repeat 3 28 0 560 176 14 27 chr3 213043900 213044048 -14480530 + GA-rich Low_complexity Low_complexity 3 148 0 202 216 59 0 chr3 213044149 213044200 -14480378 - MIR SINE MIR -155 107 54 198 327 18 0 chr3 213044282 213044337 -14480241 + L2 LINE L2 3246 3301 -12 769 338 128 59 chr3 213044978 213045413 -14479165 + L3 LINE CR1 470 873 -704 1740 132 0 28 chr3 213045413 213045702 -14478876 + AluJb SINE Alu 10 290 -22 231 61 0 0 chr3 213045702 213045735 -14478843 + (CAAAC)n Simple_repeat Simple_repeat 2 34 0 769 338 128 59 chr3 213045735 213046318 -14478260 + L3 LINE CR1 872 1560 -17 336 237 79 0 chr3 213046746 213046822 -14477756 + MIR SINE MIR 25 106 -156 1969 118 0 0 chr3 213046828 213047108 -14477470 - AluSx SINE Alu -32 280 1 845 103 0 0 chr3 213047489 213047606 -14476972 + AluSp/q SINE Alu 185 301 -12 257 314 68 85 chr3 213048005 213048241 -14476337 - L2 LINE L2 0 3272 3041 1980 114 94 26 chr3 213048894 213049245 -14475333 + THE1C LTR MaLR 1 375 0 207 0 0 0 chr3 213049259 213049282 -14475296 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 2124 99 3 10 chr3 213049286 213049588 -14474990 + AluSx SINE Alu 1 300 -12 195 296 0 0 chr3 213049619 213049663 -14474915 - L2 LINE L2 -78 3194 3151 441 0 0 0 chr3 213050331 213050380 -14474198 + (TTTA)n Simple_repeat Simple_repeat 4 52 0 409 318 18 0 chr3 213050447 213050582 -14473996 + MIR SINE MIR 2 144 -64 192 182 0 0 chr3 213050657 213050701 -14473877 + (TAA)n Simple_repeat Simple_repeat 3 46 0 328 158 19 163 chr3 213051389 213051449 -14473129 - L1MC5 LINE L1 -212 7749 7682 1840 109 53 11 chr3 213051449 213051733 -14472845 + AluSg SINE Alu 1 296 -14 328 158 19 163 chr3 213051733 213051887 -14472691 - L1MC5 LINE L1 -279 7682 7566 2148 107 3 3 chr3 213052001 213052310 -14472268 + AluSc SINE Alu 1 309 0 2027 122 0 0 chr3 213052344 213052631 -14471947 + AluSx SINE Alu 9 295 -17 451 310 31 8 chr3 213054046 213054175 -14470403 - MIR SINE MIR -58 150 19 1661 170 24 3 chr3 213054254 213054548 -14470030 + AluJb SINE Alu 2 301 -11 279 168 11 137 chr3 213054644 213054739 -14469839 - MER33 DNA MER1_type 0 363 281 780 101 73 0 chr3 213054740 213054849 -14469729 + AluJb SINE Alu 2 118 -194 26 30 0 0 chr3 213054852 213054885 -14469693 + AT_rich Low_complexity Low_complexity 1 33 0 311 297 0 0 chr3 213054928 213054992 -14469586 - Tigger2 DNA MER2_type -12 2706 2643 2218 127 62 5 chr3 213055023 213055394 -14469184 - Tigger2 DNA MER2_type -54 2664 2273 708 182 166 5 chr3 213055435 213055622 -14468956 - MER33 DNA MER1_type -107 217 1 451 291 61 7 chr3 213055622 213055770 -14468808 - MIR SINE MIR -46 216 61 2178 92 7 0 chr3 213056188 213056483 -14468095 - AluY SINE Alu -14 297 1 1316 202 75 7 chr3 213056620 213056902 -14467676 - AluJo SINE Alu -1 301 1 2026 96 3 43 chr3 213057042 213057345 -14467233 + AluSq SINE Alu 1 291 -22 757 222 30 0 chr3 213058075 213058242 -14466336 + MIR SINE MIR 82 253 -9 433 280 124 21 chr3 213058246 213058432 -14466146 + MIR SINE MIR 47 251 -11 2473 61 0 10 chr3 213058450 213058763 -14465815 + AluSg SINE Alu 1 310 0 970 263 62 53 chr3 213059709 213060235 -14464343 - MLT2B3 LTR ERVL -37 486 2 694 211 47 11 chr3 213060236 213060426 -14464152 - L1M4 LINE L1 -1572 4574 4378 238 269 50 56 chr3 213060667 213060709 -14463869 - MIR SINE MIR -69 139 98 2330 158 75 0 chr3 213060709 213061107 -14463471 + MSTA LTR MaLR 1 428 0 238 269 50 56 chr3 213061107 213061177 -14463401 - MIR SINE MIR -110 98 40 241 304 9 24 chr3 213061381 213061488 -14463090 - MER91A DNA MER1_type -8 188 3 223 250 28 14 chr3 213061628 213061700 -14462878 + CT-rich Low_complexity Low_complexity 2 74 0 237 182 0 55 chr3 213061778 213061833 -14462745 + MER112 DNA MER1_type 7 58 -202 511 243 59 18 chr3 213061847 213062016 -14462562 + L1MC5 LINE L1 7702 7877 -84 2383 52 3 7 chr3 213062038 213062348 -14462230 - AluY SINE Alu -1 310 2 459 262 58 17 chr3 213062371 213062543 -14462035 + MER112 DNA MER1_type 81 259 -1 370 321 70 19 chr3 213062786 213063001 -14461577 - L2 LINE L2 -423 2891 2666 1056 217 68 0 chr3 213063297 213063518 -14461060 - MIR SINE MIR -16 246 11 246 143 0 100 chr3 213064003 213064073 -14460505 + L1ME LINE L1 315 377 -5693 1416 239 75 104 chr3 213064219 213064331 -14460247 + L1ME LINE L1 451 565 -5515 189 0 0 0 chr3 213064331 213064352 -14460226 + (CAAA)n Simple_repeat Simple_repeat 2 22 0 1416 239 75 104 chr3 213064352 213065487 -14459091 + L1ME LINE L1 565 1628 -4452 225 263 177 20 chr3 213065646 213065844 -14458734 - L1ME LINE L1 -322 5799 5571 207 232 0 0 chr3 213065847 213065903 -14458675 + CT-rich Low_complexity Low_complexity 3 58 0 321 287 56 37 chr3 213065911 213066019 -14458559 - L1ME4a LINE L1 -199 5922 5813 679 210 85 5 chr3 213066055 213066255 -14458323 + L1MC5 LINE L1 7709 7924 -37 938 161 0 0 chr3 213066257 213066412 -14458166 + FRAM SINE Alu 1 152 -24 2123 95 0 3 chr3 213066498 213066792 -14457786 + AluSg SINE Alu 1 293 -17 238 293 181 4 chr3 213066920 213067169 -14457409 - L1ME4a LINE L1 -438 5683 5391 228 104 229 0 chr3 213067241 213067289 -14457289 - AluSp/q SINE Alu -6 297 239 4805 31 2 2 chr3 213067290 213067846 -14456732 + LTR6B LTR ERV1 1 556 -2 1646 111 0 0 chr3 213067846 213068071 -14456507 - AluSx SINE Alu -85 227 3 261 298 106 0 chr3 213068129 213068223 -14456355 + MIR SINE MIR 37 140 -122 361 56 0 0 chr3 213068473 213068527 -14456051 + LTR6B LTR ERV1 330 383 -175 2100 118 7 0 chr3 213069022 213069328 -14455250 - AluSg SINE Alu -2 308 1 489 273 45 26 chr3 213070037 213070247 -14454331 - MIR SINE MIR -40 222 11 2128 114 0 0 chr3 213070353 213070659 -14453919 - AluSx SINE Alu -6 306 1 689 263 101 14 chr3 213070854 213071063 -14453515 - MIR SINE MIR -12 250 24 199 321 0 0 chr3 213071455 213071508 -14453070 + MIR SINE MIR 91 143 -65 1742 159 3 7 chr3 213072332 213072640 -14451938 + AluJb SINE Alu 3 309 -3 641 282 79 15 chr3 213072640 213072842 -14451736 + MIR SINE MIR 22 236 -26 338 279 10 19 chr3 213074097 213074201 -14450377 + MER5B DNA MER1_type 76 178 0 3548 72 2 11 chr3 213075111 213075568 -14449010 - MLT2A2 LTR ERVL 0 453 1 279 246 14 14 chr3 213076183 213076252 -14448326 - MLT1I LTR MaLR -249 160 92 2131 86 4 0 chr3 213076791 213077097 -14447481 + AluSg1 SINE Alu 1 307 0 448 293 50 7 chr3 213077106 213077246 -14447332 + MIR SINE MIR 63 208 -54 237 250 339 16 chr3 213077257 213077381 -14447197 + L2 LINE L2 2662 2825 -489 278 250 0 0 chr3 213077390 213077454 -14447124 + L2 LINE L2 2943 3006 -307 959 236 8 40 chr3 213077454 213077704 -14446874 - MER4D LTR ERV1 0 903 662 2220 91 3 0 chr3 213077736 213078034 -14446544 - AluSg SINE Alu -9 301 3 941 192 65 49 chr3 213078036 213078232 -14446346 + MER21A LTR ERV1 16 218 -713 2364 82 0 3 chr3 213078232 213078536 -14446042 + AluSx SINE Alu 1 303 -9 941 192 65 49 chr3 213078536 213078584 -14445994 + MER21A LTR ERV1 218 264 -667 2982 141 69 30 chr3 213078586 213079125 -14445453 + MER21A LTR ERV1 372 931 0 1824 185 40 75 chr3 213079160 213079675 -14444903 - MER4D LTR ERV1 -225 666 62 1582 150 32 14 chr3 213079667 213079947 -14444631 - MER49 LTR ERV1 -638 285 1 * 696 276 89 31 chr3 213079947 213080240 -14444338 + L2 LINE L2 3003 3312 -1 3584 30 5 5 chr3 213080247 213080674 -14443904 + L1PA4 LINE L1 5729 6155 0 270 173 25 12 chr3 213080819 213080864 -14443714 + (TA)n Simple_repeat Simple_repeat 1 49 -33 2086 99 7 3 chr3 213080864 213081167 -14443411 - AluY SINE Alu -7 304 1 270 173 25 12 chr3 213081167 213081202 -14443376 + (TA)n Simple_repeat Simple_repeat 49 82 0 366 214 119 0 chr3 213081202 213081268 -14443310 + L1MC4 LINE L1 6612 6691 -1351 270 0 0 0 chr3 213081268 213081298 -14443280 + (GA)n Simple_repeat Simple_repeat 2 31 0 366 214 119 0 chr3 213081298 213081315 -14443263 + L1MC4 LINE L1 6691 6705 -1337 584 271 30 69 chr3 213081358 213081719 -14442859 + L1MC5 LINE L1 7317 7663 -298 396 40 0 0 chr3 213081759 213081809 -14442769 + (TG)n Simple_repeat Simple_repeat 2 51 0 489 210 6 96 chr3 213081824 213081991 -14442587 - MER105 DNA DNA -52 152 1 220 309 79 43 chr3 213083267 213083406 -14441172 - MIR SINE MIR -71 191 48 766 210 112 49 chr3 213083447 213083538 -14441040 - MER5C DNA MER1_type 0 324 240 2312 63 0 14 chr3 213083538 213083878 -14440700 + AluY SINE Alu 1 336 0 766 210 112 49 chr3 213083878 213084089 -14440489 - MER5C DNA MER1_type -84 240 1 271 259 40 130 chr3 213084101 213084290 -14440288 + MER5A DNA MER1_type 4 189 0 1072 249 109 26 chr3 213084547 213084977 -14439601 - L2 LINE L2 -1135 2179 1714 623 273 169 18 chr3 213085268 213085711 -14438867 - L1MC5 LINE L1 -178 7783 7274 1282 112 0 11 chr3 213085711 213085889 -14438689 + AluSg/x SINE Alu 132 307 -3 225 302 0 0 chr3 213085912 213085965 -14438613 - L1MC4a LINE L1 -460 7348 7296 2219 275 157 17 chr3 213086017 213087035 -14437543 - L2 LINE L2 -1606 1708 548 192 338 0 0 chr3 213087035 213087112 -14437466 + MIR SINE MIR 165 241 -21 2342 104 0 0 chr3 213087221 213087520 -14437058 - AluSx SINE Alu -13 299 1 297 256 92 55 chr3 213087538 213087702 -14436876 + L3 LINE CR1 1341 1510 -67 321 200 29 14 chr3 213088112 213088182 -14436396 + MIR SINE MIR 92 162 -100 2167 122 3 0 chr3 213088227 213088521 -14436057 - AluSx SINE Alu -17 295 1 405 316 10 72 chr3 213088524 213088733 -14435845 - MIR SINE MIR -62 200 5 255 174 0 0 chr3 213088735 213088781 -14435797 + MIR SINE MIR 217 262 0 362 256 18 89 chr3 213089259 213089427 -14435151 - L2 LINE L2 0 3313 3158 1853 136 23 7 chr3 213089918 213090219 -14434359 + AluSx SINE Alu 1 306 -6 22 0 0 54 chr3 213090527 213090547 -14434031 + AT_rich Low_complexity Low_complexity 1 20 -15 10775 209 32 5 chr3 213090547 213093684 -14430894 + L1PA16 LINE L1 2986 6157 -9 22 0 0 54 chr3 213093684 213093700 -14430878 + AT_rich Low_complexity Low_complexity 20 35 0 1007 140 58 0 chr3 213094368 213094539 -14430039 - AluJo SINE Alu -11 301 121 264 211 92 70 chr3 213094645 213094873 -14429705 - L1ME4a LINE L1 -115 6006 5774 2251 88 3 31 chr3 213094980 213095300 -14429278 - AluY SINE Alu 0 311 1 247 281 0 0 chr3 213096119 213096183 -14428395 - L2 LINE L2 -9 3263 3200 488 293 71 18 chr3 213097216 213097441 -14427137 + MIR SINE MIR 20 256 -6 288 222 141 20 chr3 213097989 213098088 -14426490 - MIR SINE MIR -81 127 17 420 314 0 15 chr3 213098405 213098542 -14426036 + MIR SINE MIR 20 154 -108 213 219 78 0 chr3 213098557 213098621 -14425957 + MER91C DNA MER1_type 35 103 -37 820 117 66 0 chr3 213100322 213100459 -14424119 - L1MA5 LINE L1 -3 6297 6152 321 312 111 5 chr3 213102306 213102495 -14422083 - MIR SINE MIR -48 214 6 313 359 45 20 chr3 213102602 213102847 -14421731 - L2 LINE L2 -339 2975 2725 1076 195 29 0 chr3 213103531 213103736 -14420842 - MER58A DNA MER1_type 0 224 14 2526 54 7 0 chr3 213103737 213104031 -14420547 - AluY SINE Alu -15 296 1 740 98 8 41 chr3 213104571 213104694 -14419884 - L1MA4 LINE L1 -1 6299 6181 2532 83 0 3 chr3 213104717 213105029 -14419549 - AluY SINE Alu 0 311 1 536 276 166 45 chr3 213105043 213105534 -14419044 + L2 LINE L2 2763 3312 -1 500 310 49 59 chr3 213105588 213105668 -14418910 + LTR33 LTR ERVL 1 80 -441 2493 90 0 0 chr3 213105668 213105980 -14418598 - AluSx SINE Alu 0 312 1 500 310 49 59 chr3 213105980 213106186 -14418392 + LTR33 LTR ERVL 80 284 -237 365 293 41 8 chr3 213106226 213106349 -14418229 + LTR33 LTR ERVL 156 282 -239 594 256 42 12 chr3 213106383 213106551 -14418027 + LTR33 LTR ERVL 347 519 -2 251 65 0 0 chr3 213107318 213107349 -14417229 + (GA)n Simple_repeat Simple_repeat 2 32 0 433 121 24 12 chr3 213107349 213107432 -14417146 + GA-rich Low_complexity Low_complexity 2 85 0 39452 78 7 5 chr3 213109091 213115213 -14409365 - L1PA6 LINE L1 -5 6149 15 2060 138 3 0 chr3 213115414 213115730 -14408848 - AluSx SINE Alu 0 317 1 209 333 0 0 chr3 213115785 213115842 -14408736 - L2 LINE L2 -226 3046 2990 242 35 0 0 chr3 213115962 213115991 -14408587 - Alu SINE Alu -44 258 230 591 212 212 5 chr3 213116338 213116527 -14408051 + MIR SINE MIR 25 252 -10 306 332 102 51 chr3 213116515 213116828 -14407750 - L2 LINE L2 -10 3262 2934 * 2091 98 0 0 chr3 213116984 213117249 -14407329 - AluSx SINE Alu -46 266 2 346 338 74 23 chr3 213117269 213117568 -14407010 - L2 LINE L2 -590 2724 2411 908 211 6 6 chr3 213117576 213117737 -14406841 + Tigger7 DNA MER2_type 10 170 -380 299 98 0 0 chr3 213117741 213117782 -14406796 + Tigger7 DNA MER2_type 2209 2249 -238 4142 197 41 35 chr3 213117782 213119364 -14405214 + L1MB3 LINE L1 4267 5837 -346 288 0 0 0 chr3 213119364 213119396 -14405182 + (CA)n Simple_repeat Simple_repeat 1 32 0 4142 197 41 35 chr3 213119396 213119407 -14405171 + L1MB3 LINE L1 5837 5846 -337 1223 132 5 19 chr3 213119407 213119620 -14404958 + L1MB3 LINE L1 5967 6176 -7 4142 197 41 35 chr3 213119620 213119905 -14404673 + L1MB3 LINE L1 5846 6176 -7 404 286 52 42 chr3 213120113 213120326 -14404252 - L2 LINE L2 -1897 1417 1203 492 307 44 26 chr3 213120551 213120779 -14403799 + MIR SINE MIR 18 249 -13 980 212 153 32 chr3 213120919 213121297 -14403281 - LTR37A LTR ERV1 0 426 3 2135 126 13 3 chr3 213121786 213122088 -14402490 - AluSx SINE Alu -7 305 1 430 280 98 23 chr3 213122569 213122783 -14401795 - MIR SINE MIR 0 262 33 844 190 32 99 chr3 213123032 213123316 -14401262 - MLT1A2 LTR MaLR -109 265 1 360 64 0 0 chr3 213123377 213123424 -14401154 + (TG)n Simple_repeat Simple_repeat 2 48 0 283 346 19 0 chr3 213123735 213123839 -14400739 - MIR SINE MIR -73 135 30 2420 91 13 0 chr3 213123871 213124178 -14400400 - AluSx SINE Alu 0 312 2 189 0 0 0 chr3 213124187 213124208 -14400370 + (T)n Simple_repeat Simple_repeat 1 21 0 528 309 45 0 chr3 213124538 213124716 -14399862 + MIR3 SINE MIR 15 200 -8 2378 99 0 0 chr3 213124853 213125155 -14399423 + AluY SINE Alu 1 302 -9 630 285 98 0 chr3 213125159 213125373 -14399205 + MIR SINE MIR 28 262 0 1884 98 4 8 chr3 213125922 213126176 -14398402 - AluSx SINE Alu -6 306 54 1805 216 62 49 chr3 213126620 213127107 -14397471 - MLT1J LTR MaLR -18 493 1 2488 67 7 0 chr3 213127217 213127515 -14397063 - AluSc SINE Alu -9 300 1 248 275 100 0 chr3 213127594 213127674 -14396904 + L2 LINE L2 3136 3223 -49 235 274 9 88 chr3 213128224 213128260 -14396318 - MIR SINE MIR -111 151 114 2426 44 3 86 chr3 213128260 213128599 -14395979 + AluY SINE Alu 1 311 0 235 274 9 88 chr3 213128599 213128675 -14395903 - MIR SINE MIR -148 114 48 414 214 17 60 chr3 213128767 213128884 -14395694 - L1ME LINE L1 -454 5667 5556 285 302 0 35 chr3 213130134 213130220 -14394358 - MIR SINE MIR -70 192 110 198 324 14 14 chr3 213130595 213130669 -14393909 + MIR3 SINE MIR 114 187 -21 898 217 19 33 chr3 213131547 213131759 -14392819 - MER96B DNA MER1_type? 0 417 209 299 286 10 0 chr3 213132073 213132171 -14392407 - L2 LINE L2 -2 3270 3172 227 289 28 138 chr3 213133231 213133484 -14391094 - L2 LINE L2 -62 3210 2986 227 240 60 50 chr3 213134115 213134215 -14390363 - MIR3 SINE MIR -94 114 14 616 264 93 9 chr3 213134298 213134514 -14390064 + MIR SINE MIR 23 256 -6 23 0 0 0 chr3 213134954 213134977 -14389601 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 213135549 213135570 -14389008 + AT_rich Low_complexity Low_complexity 1 21 0 1383 113 0 18 chr3 213135795 213136017 -14388561 + MLT1C LTR MaLR 1 218 -249 247 221 133 26 chr3 213136926 213137039 -14387539 - L1ME4a LINE L1 -6 6115 5991 22 35 0 0 chr3 213137086 213137115 -14387463 + AT_rich Low_complexity Low_complexity 1 29 0 658 184 42 68 chr3 213137556 213137614 -14386964 - MLT1F LTR MaLR 0 542 484 2091 167 10 37 chr3 213137614 213138015 -14386563 - MLT1B LTR MaLR 0 390 1 658 184 42 68 chr3 213138015 213138146 -14386432 - MLT1F LTR MaLR -58 484 358 2177 104 10 10 chr3 213138186 213138495 -14386083 - AluSc SINE Alu 0 309 1 915 153 0 0 chr3 213138841 213138972 -14385606 - AluSg/x SINE Alu -22 288 158 2256 112 0 3 chr3 213138981 213139284 -14385294 - AluSg SINE Alu -8 302 1 285 275 148 11 chr3 213139289 213139471 -14385107 - HAL1b LINE L1 -676 672 466 1586 164 68 0 chr3 213140032 213140313 -14384265 + AluJb SINE Alu 1 300 -12 21 0 0 0 chr3 213140651 213140672 -14383906 + AT_rich Low_complexity Low_complexity 1 21 0 1824 180 0 13 chr3 213140847 213141158 -14383420 - AluJb SINE Alu -4 308 2 512 236 40 58 chr3 213141556 213141781 -14382797 - L1ME1 LINE L1 -46 6400 6180 1239 235 119 21 chr3 213141792 213142309 -14382269 - MLT2F LTR ERVL 0 663 2 1378 156 0 5 chr3 213142322 213142540 -14382038 - AluJo SINE Alu -11 301 85 808 150 8 8 chr3 213142571 213142704 -14381874 - FLAM_C SINE Alu 0 133 1 3205 204 58 65 chr3 213142720 213143910 -14380668 - L1ME1 LINE L1 -270 6176 4995 678 205 0 8 chr3 213143910 213144032 -14380546 + FLAM_A SINE Alu 1 121 -12 3205 204 58 65 chr3 213144032 213144558 -14380020 - L1ME1 LINE L1 -1451 4995 4467 236 214 14 0 chr3 213144550 213144620 -14379958 - L1ME1 LINE L1 -4858 1568 1498 * 1326 66 0 0 chr3 213144621 213144787 -14379791 - AluSc SINE Alu -11 298 133 12514 197 39 53 chr3 213144825 213146917 -14377661 - L1MA7 LINE L1 -2 7708 5589 2293 75 0 0 chr3 213146917 213147232 -14377346 - AluY SINE Alu 0 315 1 12514 197 39 53 chr3 213147232 213149232 -14375346 - L1MA7 LINE L1 -2121 5589 3563 2024 164 0 3 chr3 213149232 213149536 -14375042 - AluJb SINE Alu -9 303 1 12514 197 39 53 chr3 213149536 213150160 -14374418 - L1MA7 LINE L1 -4147 3563 2932 698 118 0 0 chr3 213150160 213150262 -14374316 + AluSg/x SINE Alu 208 309 -1 12514 197 39 53 chr3 213150262 213151147 -14373431 - L1MA7 LINE L1 -4778 2932 2375 2518 82 0 0 chr3 213151147 213151451 -14373127 - AluSx SINE Alu -6 306 3 12514 197 39 53 chr3 213151451 213151675 -14372903 - L1MA7 LINE L1 -5335 2375 2149 * 13348 193 25 13 chr3 213151674 213157784 -14366794 + L1PB2 LINE L1 1 6204 -4 1339 304 54 35 chr3 213158331 213158963 -14365615 - L1MA7 LINE L1 -5637 1859 1216 227 221 61 46 chr3 213158980 213159111 -14365467 - L1MCa LINE L1 -4941 1485 1353 1432 205 16 46 chr3 213159139 213159442 -14365136 - AluJb SINE Alu -14 298 5 1369 237 153 2 chr3 213159461 213159951 -14364627 - L1MCa LINE L1 -5148 1459 896 469 257 59 20 chr3 213159958 213160110 -14364468 - L1MCa LINE L1 -6202 405 248 359 128 35 35 chr3 213160237 213160323 -14364255 - L1PB2 LINE L1 -87 6064 5979 2491 68 3 0 chr3 213160694 213161001 -14363577 - AluY SINE Alu -3 308 1 515 222 21 28 chr3 213162119 213162356 -14362222 + ALR/Alpha Satellite centromeric 1 235 -69 292 162 66 176 chr3 213162689 213162825 -14361753 - MIR SINE MIR -23 239 119 631 288 24 20 chr3 213162986 213163197 -14361381 - LTR16A1 LTR ERVL 0 457 243 3477 70 16 0 chr3 213163197 213163641 -14360937 + MLT2A2 LTR ERVL 1 451 -2 631 288 24 20 chr3 213163641 213163679 -14360899 - LTR16A1 LTR ERVL -214 243 207 390 309 68 11 chr3 213164457 213164648 -14359930 - HERV16 LTR ERVL -781 4983 4782 958 344 36 17 chr3 213164898 213165427 -14359151 - HERV16 LTR ERVL -1254 4400 3862 1205 198 105 22 chr3 213165449 213165670 -14358908 + MER2 DNA MER2_type 1 257 -88 2840 10 0 0 chr3 213165670 213165978 -14358600 + AluY SINE Alu 1 308 -3 1205 198 105 22 chr3 213165978 213166070 -14358508 + MER2 DNA MER2_type 257 340 -5 961 328 46 19 chr3 213166124 213166649 -14357929 - HERV16 LTR ERVL -1937 3827 3289 250 308 51 8 chr3 213166717 213166834 -14357744 - HERV16 LTR ERVL -4757 239 118 429 256 81 19 chr3 213166916 213167076 -14357502 - LTR16A1 LTR ERVL 0 457 288 182 186 70 0 chr3 213167391 213167434 -14357144 - L2 LINE L2 -248 3065 3020 407 190 0 0 chr3 213168160 213168238 -14356340 + Tigger5 DNA MER2_type 1 78 -2245 341 183 0 0 chr3 213168238 213168298 -14356280 - Tigger5 DNA MER2_type -3 2320 2261 957 229 47 80 chr3 213168430 213168796 -14355782 - HAL1 LINE L1 -74 2433 2089 2337 101 3 0 chr3 213168796 213169094 -14355484 - AluSp SINE Alu -14 299 1 957 229 47 80 chr3 213169094 213169265 -14355313 - HAL1 LINE L1 -418 2089 1914 384 200 0 0 chr3 213169267 213169347 -14355231 + CT-rich Low_complexity Low_complexity 4 83 0 1973 155 0 0 chr3 213169360 213169650 -14354928 - AluSx SINE Alu -22 290 1 422 229 127 57 chr3 213169650 213169894 -14354684 - HAL1 LINE L1 -579 1928 1668 411 145 0 0 chr3 213170430 213170499 -14354079 + (TA)n Simple_repeat Simple_repeat 1 69 0 1634 113 0 0 chr3 213170551 213170764 -14353814 - AluSx SINE Alu -99 213 1 1321 244 77 26 chr3 213170914 213171340 -14353238 - MLT1C LTR MaLR 0 467 20 227 174 0 0 chr3 213171594 213171640 -14352938 + Alu SINE Alu 256 301 -1 1772 216 50 57 chr3 213171669 213172568 -14352010 - L1ME LINE L1 -555 5611 4724 912 161 0 7 chr3 213172569 213172706 -14351872 + AluJo SINE Alu 1 136 -176 1688 222 25 19 chr3 213172713 213173232 -14351346 - L1ME LINE L1 -1411 4735 4214 1010 214 22 21 chr3 213173382 213173721 -14350857 + L1MC/D LINE L1 5177 5519 -743 3728 82 20 7 chr3 213173926 213174285 -14350293 - L1PB1 LINE L1 -1 6150 5780 488 16 16 0 chr3 213174285 213174346 -14350232 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 3728 82 20 7 chr3 213174346 213174524 -14350054 - L1PB1 LINE L1 -371 5780 5606 204 327 79 30 chr3 213175090 213175191 -14349387 - MIR SINE MIR -82 126 21 1984 153 10 0 chr3 213175337 213175637 -14348941 + AluJo SINE Alu 5 307 -5 977 183 14 10 chr3 213175897 213176105 -14348473 + MER2 DNA MER2_type 1 209 -136 234 299 15 0 chr3 213176140 213176207 -14348371 + MER2 DNA MER2_type 278 345 0 596 376 28 0 chr3 213176364 213176545 -14348033 - MER91A DNA MER1_type -10 186 1 425 234 80 15 chr3 213176631 213176768 -14347810 + L2 LINE L2 3160 3305 -8 569 304 83 94 chr3 213177059 213177712 -14346866 + L2 LINE L2 2618 3271 -1 420 279 38 80 chr3 213179390 213179652 -14344926 - MLT1J LTR MaLR -260 251 1 323 183 0 0 chr3 213182323 213182394 -14342184 + LOR1a LTR ERV1 238 308 -189 679 197 184 31 chr3 213182417 213182645 -14341933 + LOR1a LTR ERV1 235 497 0 2439 69 0 7 chr3 213182953 213183256 -14341322 - AluSq SINE Alu -12 301 1 23 33 0 0 chr3 213183401 213183431 -14341147 + AT_rich Low_complexity Low_complexity 1 30 0 508 126 46 11 chr3 213183964 213184051 -14340527 + MER5A DNA MER1_type 100 189 0 452 113 141 0 chr3 213184117 213184188 -14340390 - MER5A DNA MER1_type -107 82 2 338 271 57 42 chr3 213184196 213184380 -14340198 + L1ME3A LINE L1 5944 6138 -24 876 212 0 6 chr3 213185302 213185467 -14339111 - FRAM SINE Alu -12 164 1 2534 141 62 12 chr3 213187118 213187522 -14337056 + MSTA LTR MaLR 5 428 0 472 152 0 0 chr3 213187989 213188055 -14336523 + AluS SINE Alu 2 67 -246 1762 100 3 86 chr3 213188055 213188346 -14336232 + AluSx SINE Alu 31 297 -15 681 236 45 89 chr3 213188363 213188609 -14335969 + MIR SINE MIR 28 262 0 356 222 151 24 chr3 213189455 213189581 -14334997 + L1MCc LINE L1 13 154 -6269 481 214 0 0 chr3 213189583 213189667 -14334911 - MER81 DNA DNA -30 84 1 860 279 92 16 chr3 213189668 213189973 -14334605 + L1MCc LINE L1 134 461 -5962 1918 112 127 26 chr3 213189992 213190332 -14334246 + THE1C LTR MaLR 2 375 0 1941 237 106 30 chr3 213190383 213191031 -14333547 + L1MCc LINE L1 872 1574 -4848 1173 174 31 0 chr3 213191057 213191253 -14333325 + MER20 DNA MER1_type 1 202 -17 585 271 53 72 chr3 213191254 213191575 -14333003 + L1M4 LINE L1 3232 3546 -2600 2643 107 14 19 chr3 213192064 213192430 -14332148 + THE1B LTR MaLR 1 364 0 1184 193 133 0 chr3 213192519 213192768 -14331810 - MSTB LTR MaLR 0 426 145 984 178 75 68 chr3 213193516 213193716 -14330862 - MER33 DNA MER1_type -2262 323 126 1543 169 57 33 chr3 213193716 213194017 -14330561 + AluJo SINE Alu 1 308 -4 2073 116 3 13 chr3 213194019 213194321 -14330257 + AluSx SINE Alu 2 300 -12 2084 98 19 48 chr3 213194323 213194638 -14329940 + AluSx SINE Alu 1 306 -6 984 178 75 68 chr3 213194638 213194752 -14329826 - MER33 DNA MER1_type -2459 126 1 549 170 58 134 chr3 213194990 213195161 -14329417 - MER45A DNA AcHobo -20 158 1 2165 88 7 0 chr3 213195570 213195880 -14328698 + AluSx SINE Alu 1 312 0 28 48 0 0 chr3 213196329 213196371 -14328207 + GC_rich Low_complexity Low_complexity 1 42 0 1926 100 56 0 chr3 213197042 213197311 -14327267 + AluSx SINE Alu 29 312 0 26 0 0 0 chr3 213197701 213197727 -14326851 + AT_rich Low_complexity Low_complexity 1 26 0 1768 107 0 0 chr3 213197857 213198081 -14326497 + AluSc SINE Alu 1 224 -85 1901 124 46 0 chr3 213198172 213198455 -14326123 - AluSx SINE Alu -16 296 1 2135 164 57 29 chr3 213198756 213199005 -14325573 - MSTB1 LTR MaLR 0 432 165 2710 113 11 5 chr3 213199005 213199378 -14325200 - THE1C LTR MaLR 0 375 1 2135 164 57 29 chr3 213199378 213199548 -14325030 - MSTB1 LTR MaLR -267 165 1 4669 172 84 23 chr3 213199555 213199624 -14324954 - L1MD1 LINE L1 -1 6241 6178 1659 197 13 0 chr3 213199624 213199924 -14324654 + AluJo SINE Alu 1 304 -8 4669 172 84 23 chr3 213199924 213201079 -14323499 - L1MD1 LINE L1 -64 6178 5095 1831 112 31 143 chr3 213201079 213201499 -14323079 - THE1C LTR MaLR -2 373 1 10598 117 11 44 chr3 213201499 213203129 -14321449 - THE1C-int LTR MaLR 0 1580 4 1794 138 43 101 chr3 213203132 213203530 -14321048 - THE1C LTR MaLR 0 375 1 4669 172 84 23 chr3 213203530 213203562 -14321016 - L1MD1 LINE L1 -1148 5094 4909 408 299 67 53 chr3 213203925 213204209 -14320369 - L1MD1 LINE L1 -2129 4017 3730 2094 152 3 37 chr3 213204300 213204649 -14319929 - MER1B DNA MER1_type 0 337 1 1854 135 44 0 chr3 213204686 213204982 -14319596 - AluSx SINE Alu -3 309 1 1764 149 35 10 chr3 213205019 213205307 -14319271 + AluJb SINE Alu 1 295 -17 24 67 0 0 chr3 213205414 213205459 -14319119 + AT_rich Low_complexity Low_complexity 1 45 0 26 30 0 0 chr3 213205558 213205591 -14318987 + AT_rich Low_complexity Low_complexity 1 33 0 2227 82 3 29 chr3 213205599 213205915 -14318663 + AluY SINE Alu 1 308 -3 2100 135 3 0 chr3 213205989 213206292 -14318286 + AluSx SINE Alu 1 304 -8 270 241 54 54 chr3 213206432 213206544 -14318034 - L1MD1 LINE L1 -3108 3038 2927 15592 196 33 8 chr3 213206583 213213082 -14311496 + L1PB1 LINE L1 6 6865 -2 1947 153 0 0 chr3 213213220 213213514 -14311064 - AluSx SINE Alu -17 295 2 303 272 72 96 chr3 213213614 213213841 -14310737 - L1MD1 LINE L1 -3520 2626 2412 2104 103 4 0 chr3 213213841 213214113 -14310465 - AluSx SINE Alu -39 273 1 303 272 72 96 chr3 213214113 213214300 -14310278 - L1MD1 LINE L1 -3734 2412 2222 1237 72 6 22 chr3 213214529 213214709 -14309869 + MSTA-int LTR MaLR 1404 1580 0 2198 155 131 8 chr3 213214709 213215090 -14309488 + MSTA LTR MaLR 1 428 0 1775 173 25 28 chr3 213215095 213215413 -14309165 - MLT1A1 LTR MaLR -48 317 1 5545 91 0 9 chr3 213216790 213217485 -14307093 - LTR8 LTR ERV1 0 691 3 230 368 96 0 chr3 213217742 213217867 -14306711 - L2 LINE L2 -4 3268 3132 190 320 146 19 chr3 213217902 213218005 -14306573 - MIR SINE MIR -39 223 108 185 159 23 0 chr3 213218360 213218404 -14306174 + CT-rich Low_complexity Low_complexity 4 48 0 234 322 9 30 chr3 213218416 213218577 -14306001 + CT-rich Low_complexity Low_complexity 1 157 0 291 306 7 27 chr3 213218642 213218789 -14305789 + CT-rich Low_complexity Low_complexity 4 147 0 259 339 17 8 chr3 213218823 213218941 -14305637 + CT-rich Low_complexity Low_complexity 4 122 0 244 228 18 18 chr3 213219938 213219995 -14304583 - L2 LINE L2 -211 3061 3005 1613 190 3 35 chr3 213220121 213220431 -14304147 + AluJb SINE Alu 1 300 -12 553 297 113 13 chr3 213220624 213220853 -14303725 + MIR SINE MIR 11 262 0 23 0 0 0 chr3 213220973 213220996 -14303582 + AT_rich Low_complexity Low_complexity 1 23 0 1364 122 20 0 chr3 213221802 213221999 -14302579 + L1PA16 LINE L1 5966 6166 0 861 297 113 10 chr3 213222472 213222991 -14301587 - L2 LINE L2 -123 3190 2615 341 305 71 67 chr3 213223423 213223600 -14300978 + L3 LINE CR1 1189 1369 -208 2462 129 28 6 chr3 213223600 213223956 -14300622 - THE1B LTR MaLR 0 364 1 341 305 71 67 chr3 213223956 213224060 -14300518 + L3 LINE CR1 1369 1471 -106 2086 239 74 12 chr3 213224077 213224578 -14300000 + MLT1F LTR MaLR 8 539 -3 234 288 27 18 chr3 213224967 213225078 -14299500 + (CATATA)n Simple_repeat Simple_repeat 5 116 0 1830 126 34 89 chr3 213225367 213225526 -14299052 - MER44D DNA MER2_type -1884 607 441 2150 103 14 3 chr3 213225526 213225833 -14298745 + AluSc SINE Alu 1 310 0 1830 126 34 89 chr3 213225833 213226020 -14298558 - MER44D DNA MER2_type -2050 441 7 203 312 92 28 chr3 213226268 213226377 -14298201 + L2 LINE L2 3192 3307 -6 22 0 0 0 chr3 213226745 213226767 -14297811 + AT_rich Low_complexity Low_complexity 1 22 0 580 281 96 30 chr3 213226833 213227156 -14297422 - L1MC5 LINE L1 -303 7658 7307 2339 91 14 0 chr3 213227156 213227452 -14297126 - AluSg SINE Alu -10 300 1 580 281 96 30 chr3 213227452 213227494 -14297084 - L1MC5 LINE L1 -654 7307 7269 269 224 112 31 chr3 213227507 213227605 -14296973 - L1MC4a LINE L1 -459 7349 7244 1028 269 131 68 chr3 213227630 213227708 -14296870 - L1MC5 LINE L1 -733 7228 7156 2007 139 3 10 chr3 213227708 213228018 -14296560 - AluSx SINE Alu -4 308 1 1028 269 131 68 chr3 213228018 213229474 -14295104 - L1MC5 LINE L1 -805 7156 5582 29 28 0 0 chr3 213229563 213229599 -14294979 + AT_rich Low_complexity Low_complexity 1 36 0 1882 254 112 54 chr3 213230781 213232063 -14292515 + L1ME LINE L1 4 1355 -4725 2112 125 13 7 chr3 213232063 213232540 -14292038 + AluSx SINE Alu 1 312 0 1882 254 112 54 chr3 213232540 213232651 -14291927 + L1ME LINE L1 1355 1458 -4622 2076 90 6 35 chr3 213233184 213233496 -14291082 - AluY SINE Alu -8 303 1 273 300 0 0 chr3 213234309 213234379 -14290199 - L2 LINE L2 -3 3269 3200 488 293 71 18 chr3 213235414 213235639 -14288939 + MIR SINE MIR 20 256 -6 288 222 141 20 chr3 213236187 213236286 -14288292 - MIR SINE MIR -81 127 17 420 314 0 15 chr3 213236603 213236740 -14287838 + MIR SINE MIR 20 154 -108 213 219 78 0 chr3 213236755 213236819 -14287759 + MER91C DNA MER1_type 35 103 -37 820 117 66 0 chr3 213238520 213238657 -14285921 - L1MA5 LINE L1 -3 6297 6152 321 312 111 5 chr3 213240504 213240693 -14283885 - MIR SINE MIR -48 214 6 329 355 45 20 chr3 213240800 213241045 -14283533 - L2 LINE L2 -339 2975 2725 1076 195 29 0 chr3 213241729 213241934 -14282644 - MER58A DNA MER1_type 0 224 14 356 71 36 0 chr3 213241935 213241991 -14282587 - Alu SINE Alu -5 295 238 195 42 0 0 chr3 213242687 213242711 -14281867 + (CA)n Simple_repeat Simple_repeat 2 25 0 403 241 0 0 chr3 213243111 213243190 -14281388 - MER63 DNA MER1_type -314 748 44 200 243 63 72 chr3 213243931 213244042 -14280536 - MIR3 SINE MIR 0 208 99 1755 73 5 0 chr3 213244316 213244536 -14280042 - AluY SINE Alu -16 295 75 4638 120 18 11 chr3 213244546 213245255 -14279323 - L1PA13 LINE L1 -2 6161 5448 21 57 0 0 chr3 213246159 213246194 -14278384 + AT_rich Low_complexity Low_complexity 1 35 0 2288 96 0 3 chr3 213246200 213246493 -14278085 + AluSq SINE Alu 1 292 -21 380 262 36 129 chr3 213246807 213247193 -14277385 - L1ME4a LINE L1 -271 5850 5501 2090 121 7 26 chr3 213248454 213248760 -14275818 + AluSx SINE Alu 1 300 -12 28 29 0 0 chr3 213248930 213248965 -14275613 + AT_rich Low_complexity Low_complexity 1 35 0 316 212 200 30 chr3 213250211 213250376 -14274202 - MIR SINE MIR -14 248 56 2189 99 0 3 chr3 213250734 213251056 -14273522 - AluSx SINE Alu 0 322 2 1232 240 63 96 chr3 213251068 213251747 -14272831 - HAL1 LINE L1 -5 2502 1846 2705 271 87 29 chr3 213251754 213252250 -14272328 - HAL1 LINE L1 -751 1756 1290 1872 159 3 29 chr3 213252250 213252565 -14272013 - AluJb SINE Alu -4 308 2 2705 271 87 29 chr3 213252565 213253223 -14271355 - HAL1 LINE L1 -1217 1290 536 501 174 128 9 chr3 213253385 213253494 -14271084 - MER46C DNA MER2_type -209 129 8 294 261 14 0 chr3 213253674 213253743 -14270835 + MIR SINE MIR 51 120 -142 6778 116 8 9 chr3 213253743 213253926 -14270652 + L1P4 LINE L1 4315 4497 -1671 2343 101 0 7 chr3 213253926 213254232 -14270346 + AluSc SINE Alu 1 304 -5 6778 116 8 9 chr3 213254232 213255416 -14269162 + L1P4 LINE L1 4497 5675 -493 321 280 10 0 chr3 213255550 213255650 -14268928 - L2 LINE L2 -993 2321 2221 342 268 207 17 chr3 213255715 213255894 -14268684 + MIR SINE MIR 30 242 -20 223 293 0 49 chr3 213256298 213256380 -14268198 + L2 LINE L2 3194 3271 -1 2097 106 3 3 chr3 213256564 213256891 -14267687 + AluSq SINE Alu 1 327 0 368 286 95 12 chr3 213257178 213257346 -14267232 + MIR SINE MIR 8 189 -73 433 257 18 9 chr3 213257898 213258007 -14266571 + MIR SINE MIR 37 146 -62 319 292 56 25 chr3 213259911 213260072 -14264506 + MER5B DNA MER1_type 12 177 -1 248 318 40 16 chr3 213260072 213260197 -14264381 - MIR3 SINE MIR -47 161 34 2306 84 7 7 chr3 213260401 213260700 -14263878 + AluSx SINE Alu 5 303 -9 2289 180 36 70 chr3 213260962 213261544 -14263034 - LTR6A LTR ERV1 0 564 3 308 109 55 18 chr3 213261561 213261616 -14262962 - HERVS71 LTR ERV1 -21 8957 8901 230 368 30 6 chr3 213262021 213262187 -14262391 - L2 LINE L2 -459 2855 2686 468 269 159 48 chr3 213262503 213262875 -14261703 - LTR16A LTR ERVL -24 426 14 1611 124 50 0 chr3 213263208 213263449 -14261129 - MER9 LTR ERVK -258 253 1 2292 99 7 0 chr3 213263484 213263776 -14260802 + AluSq SINE Alu 1 294 -19 1792 145 17 7 chr3 213264003 213264293 -14260285 + AluSx SINE Alu 14 306 -6 22 0 0 54 chr3 213264601 213264621 -14259957 + AT_rich Low_complexity Low_complexity 1 20 -15 10775 209 32 7 chr3 213264621 213267760 -14256818 + L1PA16 LINE L1 2986 6157 -9 22 0 0 54 chr3 213267760 213267776 -14256802 + AT_rich Low_complexity Low_complexity 20 35 0 1007 140 58 0 chr3 213268444 213268615 -14255963 - AluJo SINE Alu -11 301 121 264 211 92 70 chr3 213268721 213268949 -14255629 - L1ME4a LINE L1 -115 6006 5774 2144 116 3 28 chr3 213269057 213269377 -14255201 - AluSx SINE Alu 0 312 1 366 275 28 73 chr3 213269381 213269599 -14254979 + L2 LINE L2 3094 3301 -12 1687 150 7 38 chr3 213269681 213269974 -14254604 + AluJb SINE Alu 29 312 0 234 0 0 0 chr3 213270627 213270653 -14253925 + (CCA)n Simple_repeat Simple_repeat 3 28 0 271 174 0 29 chr3 213271296 213271365 -14253213 + GA-rich Low_complexity Low_complexity 3 69 0 779 155 37 19 chr3 213271365 213271526 -14253052 + AluSg/x SINE Alu 112 275 -37 361 306 116 5 chr3 213272280 213272496 -14252082 + MIR SINE MIR 20 259 -3 239 299 103 0 chr3 213272533 213272640 -14251938 - L2 LINE L2 -22 3250 3133 215 188 109 0 chr3 213273469 213273533 -14251045 - MIR SINE MIR -12 250 180 * 304 320 30 0 chr3 213273527 213273627 -14250951 + L2 LINE L2 1117 1219 -2095 1723 124 62 24 chr3 213273627 213273917 -14250661 - AluSc SINE Alu -8 301 1 929 110 16 0 chr3 213274262 213274389 -14250189 + AluSx SINE Alu 1 129 -184 243 171 40 0 chr3 213274391 213274467 -14250111 + (TA)n Simple_repeat Simple_repeat 2 80 0 1075 138 54 0 chr3 213274474 213274641 -14249937 + AluSx SINE Alu 127 302 -10 305 347 107 20 chr3 213274767 213275159 -14249419 + L2 LINE L2 1962 2387 -927 1512 171 20 52 chr3 213275259 213275564 -14249014 - AluJo SINE Alu -17 295 1 570 218 35 0 chr3 213275585 213275727 -14248851 - Charlie1 DNA MER1_type -1 2760 2614 38 0 0 0 chr3 213276238 213276276 -14248302 + AT_rich Low_complexity Low_complexity 1 38 0 4024 180 39 121 chr3 213276327 213276885 -14247693 - Charlie1 DNA MER1_type -171 2590 1988 1741 204 48 33 chr3 213276885 213277345 -14247233 - MLT1C LTR MaLR 0 467 1 4024 180 39 121 chr3 213277345 213277820 -14246758 - Charlie1 DNA MER1_type -773 1988 1475 1749 180 0 17 chr3 213277820 213278115 -14246463 + AluJb SINE Alu 5 294 -18 4024 180 39 121 chr3 213278115 213278427 -14246151 - Charlie1 DNA MER1_type -1286 1475 45 267 315 79 12 chr3 213278515 213278680 -14245898 + L2 LINE L2 2612 2787 -527 276 298 99 25 chr3 213278738 213278899 -14245679 + L2 LINE L2 2871 3043 -229 1143 155 0 11 chr3 213278993 213279174 -14245404 - AluSx SINE Alu -13 297 119 33038 95 9 29 chr3 213279178 213285646 -14238932 - L1PA7 LINE L1 -10 6459 5 1053 98 0 0 chr3 213285654 213285787 -14238791 - AluSx SINE Alu -180 133 1 196 227 106 30 chr3 213285844 213285910 -14238668 - MIR SINE MIR -1 261 191 2245 116 3 3 chr3 213285997 213286323 -14238255 - AluSp SINE Alu 0 313 1 1249 210 80 7 chr3 213286455 213286741 -14237837 - AluJo SINE Alu -5 307 1 2179 100 3 36 chr3 213286881 213287182 -14237396 + AluSq SINE Alu 1 291 -22 751 210 30 0 chr3 213287921 213288088 -14236490 + MIR SINE MIR 82 253 -9 374 330 108 0 chr3 213288092 213288277 -14236301 + MIR SINE MIR 47 251 -11 753 161 58 0 chr3 213288297 213288471 -14236107 + AluSg SINE Alu 2 185 -125 186 189 0 0 chr3 213338797 213338834 -14185744 + A-rich Low_complexity Low_complexity 1 37 0 207 0 0 0 chr3 213338916 213338939 -14185639 + (T)n Simple_repeat Simple_repeat 1 23 0 1795 149 40 17 chr3 213341310 213341611 -14182967 + AluSx SINE Alu 1 308 -4 744 140 0 0 chr3 213341673 213341780 -14182798 + FRAM SINE Alu 45 151 -25 1933 129 23 60 chr3 213343437 213343518 -14181060 + MER44D DNA MER2_type 1 83 -2408 2193 109 0 0 chr3 213343518 213343824 -14180754 + AluSx SINE Alu 1 306 0 1933 129 23 60 chr3 213343824 213344091 -14180487 + MER44D DNA MER2_type 83 607 -2 2032 175 77 18 chr3 213344232 213344621 -14179957 + MSTB LTR MaLR 1 412 -14 1841 62 13 0 chr3 213344649 213344874 -14179704 - AluY SINE Alu -14 297 70 1122 200 106 69 chr3 213345030 213345380 -14179198 - MLT1A1 LTR MaLR -2 363 1 418 274 22 7 chr3 213345409 213345544 -14179034 - MER5A DNA MER1_type -51 138 2 2043 122 27 14 chr3 213345724 213345882 -14178696 - AluSx SINE Alu -13 299 134 2438 92 3 0 chr3 213345882 213346186 -14178392 - AluSp SINE Alu -8 305 1 2043 122 27 14 chr3 213346186 213346322 -14178256 - AluSx SINE Alu -178 134 1 1122 336 28 24 chr3 213346395 213346976 -14177602 - HERV16 LTR ERVL -1480 4174 3592 429 233 0 0 chr3 213346981 213347071 -14177507 + MLT1E LTR MaLR 1 90 -503 1669 275 64 54 chr3 213347114 213347476 -14177102 - HERV16 LTR ERVL -4273 723 366 2402 100 0 0 chr3 213347476 213347785 -14176793 - AluSq SINE Alu -4 309 1 1669 275 64 54 chr3 213347785 213348130 -14176448 - HERV16 LTR ERVL -4630 366 9 737 295 126 30 chr3 213348130 213348337 -14176241 - LTR16A LTR ERVL -7 443 257 1580 192 57 93 chr3 213348337 213348417 -14176161 - MSTB2 LTR MaLR 0 457 376 11012 30 0 143 chr3 213348417 213350034 -14174544 + SVA Other Other 1 1386 0 1580 192 57 93 chr3 213350034 213350427 -14174151 - MSTB2 LTR MaLR -81 376 1 737 295 126 30 chr3 213350427 213350592 -14173986 - LTR16A LTR ERVL -193 257 35 798 176 0 8 chr3 213350653 213350778 -14173800 - FLAM_C SINE Alu -9 124 1 1745 169 35 10 chr3 213350904 213351194 -14173384 + AluSx SINE Alu 1 297 -15 603 154 77 0 chr3 213351205 213351309 -14173269 + FLAM_C SINE Alu 2 113 -30 267 31 0 0 chr3 213351310 213351342 -14173236 + (TC)n Simple_repeat Simple_repeat 2 33 0 297 0 0 0 chr3 213351356 213351389 -14173189 + (CA)n Simple_repeat Simple_repeat 2 34 0 2186 102 0 52 chr3 213351496 213351820 -14172758 + AluSg SINE Alu 3 309 -1 289 383 23 0 chr3 213352064 213352192 -14172386 + MER91A DNA MER1_type 28 158 -38 204 311 54 0 chr3 213352283 213352357 -14172221 + MIR SINE MIR 15 92 -170 1665 203 14 27 chr3 213352357 213352726 -14171852 + MLT1A1 LTR MaLR 1 364 -1 2220 92 7 0 chr3 213352741 213353049 -14171529 - AluSx SINE Alu 0 310 1 347 205 52 2 chr3 213353143 213353243 -14171335 - L1ME2 LINE L1 -1 6333 6067 241 244 146 41 chr3 213353412 213353535 -14171043 + L2 LINE L2 3136 3271 -1 24 0 0 0 chr3 213354100 213354124 -14170454 + GC_rich Low_complexity Low_complexity 1 24 0 206 335 82 13 chr3 213354867 213355025 -14169553 - MIR SINE MIR -14 248 80 * 439 176 12 12 chr3 213355000 213355085 -14169493 - L2 LINE L2 -4 3309 3225 238 240 93 54 chr3 213355131 213355260 -14169318 + HAL1b LINE L1 1205 1338 -10 2063 134 0 3 chr3 213355369 213355674 -14168904 + AluJb SINE Alu 1 304 -8 245 250 71 12 chr3 213356445 213356529 -14168049 - MIR3 SINE MIR -3 205 117 186 191 85 0 chr3 213356546 213356593 -14167985 - L2 LINE L2 -49 3264 3214 2253 112 0 0 chr3 213356703 213356990 -14167588 - AluSx SINE Alu -25 287 1 530 275 57 62 chr3 213357060 213357271 -14167307 + MER102a DNA MER1_type 121 330 0 1803 92 153 11 chr3 213357709 213357970 -14166608 - AluSx SINE Alu -14 298 1 2213 116 13 0 chr3 213358005 213358308 -14166270 - AluSp SINE Alu -6 307 1 1866 94 0 0 chr3 213358317 213358551 -14166027 - AluY SINE Alu -6 305 72 277 271 66 8 chr3 213359198 213359320 -14165258 - L2 LINE L2 -67 3246 3118 1892 143 0 14 chr3 213359796 213360082 -14164496 + AluSx SINE Alu 1 282 -30 1681 155 102 7 chr3 213360310 213360594 -14163984 - AluSx SINE Alu -1 311 1 180 309 18 0 chr3 213361131 213361186 -14163392 - L2 LINE L2 -48 3265 3210 25 0 0 0 chr3 213362408 213362433 -14162145 + AT_rich Low_complexity Low_complexity 1 25 0 2432 82 0 0 chr3 213363274 213363567 -14161011 + AluSx SINE Alu 1 293 -19 261 0 0 0 chr3 213363998 213364027 -14160551 + (TG)n Simple_repeat Simple_repeat 2 30 0 345 296 62 49 chr3 213364124 213364227 -14160351 + L1ME4a LINE L1 5576 5676 -445 2259 92 0 0 chr3 213364227 213364541 -14160037 - AluSg SINE Alu 0 314 1 345 296 62 49 chr3 213364541 213364740 -14159838 + L1ME4a LINE L1 5676 5883 -238 1725 172 52 3 chr3 213364763 213365054 -14159524 + AluJo SINE Alu 1 305 -7 293 73 24 0 chr3 213365456 213365497 -14159081 + U2 snRNA snRNA 1 42 -146 186 229 16 82 chr3 213365738 213365799 -14158779 + MIR3 SINE MIR 135 191 -17 2712 149 63 28 chr3 213365882 213366032 -14158546 + L1MB8 LINE L1 5174 5317 -861 2535 64 0 0 chr3 213366032 213366327 -14158251 + AluY SINE Alu 1 295 -16 2712 149 63 28 chr3 213366327 213367059 -14157519 + L1MB8 LINE L1 5317 6176 -2 205 260 80 0 chr3 213368391 213368441 -14156137 - L2 LINE L2 -5 3267 3214 1901 110 65 21 chr3 213368563 213368853 -14155725 - AluSx SINE Alu -9 303 1 413 154 123 39 chr3 213372997 213373127 -14151451 + AluJb SINE Alu 1 141 -161 23 33 0 0 chr3 213377706 213377736 -14146842 + AT_rich Low_complexity Low_complexity 1 30 0 1922 102 87 4 chr3 213378677 213378952 -14145626 + AluSc SINE Alu 4 301 -8 2191 133 0 0 chr3 213379260 213379569 -14145009 + AluY SINE Alu 1 309 -2 183 156 0 0 chr3 213379611 213379643 -14144935 + T-rich Low_complexity Low_complexity 1 32 0 887 154 0 0 chr3 213379794 213379930 -14144648 + AluSq/x SINE Alu 1 136 -177 2268 117 7 0 chr3 213379930 213380237 -14144341 + AluSq SINE Alu 1 309 -4 2070 184 70 42 chr3 213380256 213380712 -14143866 + MER21A LTR ERV1 384 903 -11 513 213 63 63 chr3 213380714 213380888 -14143690 - AluJb SINE Alu -1 311 138 1507 129 0 55 chr3 213380890 213381145 -14143433 - AluJb SINE Alu -8 304 64 2356 88 0 10 chr3 213381434 213381739 -14142839 + AluSp SINE Alu 1 302 -11 2074 131 3 7 chr3 213381751 213382048 -14142530 + AluSq SINE Alu 1 296 -17 1324 272 57 27 chr3 213382581 213382680 -14141898 + HAL1 LINE L1 1 96 -2411 1359 170 124 11 chr3 213382680 213382945 -14141633 + AluJb SINE Alu 3 297 -15 1324 272 57 27 chr3 213382945 213383323 -14141255 + HAL1 LINE L1 96 492 -2015 1001 249 114 61 chr3 213383513 213383756 -14140822 - L2 LINE L2 -954 2360 2131 2375 95 0 7 chr3 213383756 213384061 -14140517 - AluSq SINE Alu -10 303 1 1001 249 114 61 chr3 213384061 213384327 -14140251 - L2 LINE L2 -1183 2131 1824 1663 176 32 4 chr3 213384401 213384679 -14139899 - AluJo SINE Alu -17 295 10 319 273 81 68 chr3 213384688 213384806 -14139772 + L1MEd LINE L1 87 209 -5910 3419 97 60 46 chr3 213384806 213385392 -14139186 - MER4A LTR ERV1 -4 596 3 319 273 81 68 chr3 213385392 213385434 -14139144 + L1MEd LINE L1 209 249 -5870 375 113 0 0 chr3 213385441 213385503 -14139075 + (TA)n Simple_repeat Simple_repeat 2 63 0 2142 114 7 0 chr3 213385503 213385783 -14138795 - AluSx SINE Alu -30 282 1 489 198 8 33 chr3 213385784 213385905 -14138673 - L1MC3 LINE L1 -6 7779 7662 315 269 59 78 chr3 213386053 213386251 -14138327 + L1MEd LINE L1 650 843 -5276 946 111 0 22 chr3 213386251 213386386 -14138192 + FLAM_C SINE Alu 2 133 0 315 269 59 78 chr3 213386386 213386443 -14138135 + L1MEd LINE L1 843 900 -5219 2073 101 4 4 chr3 213386452 213386729 -14137849 + AluSx SINE Alu 1 277 -35 195 42 0 0 chr3 213386736 213386760 -14137818 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 27 0 0 0 chr3 213387298 213387325 -14137253 + AT_rich Low_complexity Low_complexity 1 27 0 28 48 0 0 chr3 213387465 213387507 -14137071 + AT_rich Low_complexity Low_complexity 1 42 0 2313 108 0 0 chr3 213387507 213387804 -14136774 - AluSq SINE Alu -16 297 1 808 165 0 23 chr3 213387811 213387944 -14136634 - FLAM_C SINE Alu -3 130 1 381 210 50 10 chr3 213387944 213388044 -14136534 + L1ME4a LINE L1 5990 6093 -28 386 203 7 128 chr3 213388677 213388755 -14135823 + MIR SINE MIR 15 101 -161 2275 92 0 10 chr3 213388755 213389060 -14135518 - AluY SINE Alu -7 304 3 1220 207 9 104 chr3 213389064 213389251 -14135327 - AluSp SINE Alu -7 306 164 1305 167 21 103 chr3 213389251 213389581 -14134997 - AluYb8 SINE Alu -15 303 1 1220 207 9 104 chr3 213389581 213389731 -14134847 - AluSp SINE Alu -149 164 1 386 203 7 128 chr3 213389731 213389795 -14134783 + MIR SINE MIR 104 144 -118 329 225 11 11 chr3 213389925 213390014 -14134564 - MER5B DNA MER1_type -89 89 1 700 229 21 68 chr3 213390022 213390167 -14134411 + MER5A DNA MER1_type 1 136 -53 2395 101 3 0 chr3 213390167 213390475 -14134103 - AluSq SINE Alu -4 309 1 700 229 21 68 chr3 213390475 213390521 -14134057 + MER5A DNA MER1_type 136 183 -6 193 316 13 25 chr3 213390527 213390566 -14134012 + L2 LINE L2 3148 3186 -86 1726 183 37 0 chr3 213390566 213390742 -14133836 - AluJo SINE Alu -1 311 118 186 43 0 0 chr3 213390742 213390765 -14133813 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1726 183 37 0 chr3 213390765 213390888 -14133690 - AluJo SINE Alu -194 118 1 193 316 13 25 chr3 213390888 213390927 -14133651 + L2 LINE L2 3186 3225 -47 269 306 51 20 chr3 213390952 213391050 -14133528 - L2 LINE L2 -4 3268 3168 2305 90 3 29 chr3 213391215 213391526 -14133052 - AluSq SINE Alu -10 303 1 3483 121 6 2 chr3 213391622 213392117 -14132461 + LOR1a LTR ERV1 1 497 0 1073 260 52 6 chr3 213392144 213392545 -14132033 - MLT2E LTR ERVL 0 628 167 2426 96 0 3 chr3 213392555 213392867 -14131711 - AluSx SINE Alu -1 311 1 1554 113 0 14 chr3 213392908 213393129 -14131449 - AluSq SINE Alu -95 218 1 345 272 139 12 chr3 213393135 213393308 -14131270 - MIR SINE MIR -66 196 2 2258 110 7 0 chr3 213393414 213393714 -14130864 - AluSp SINE Alu -11 302 1 2256 91 0 28 chr3 213394206 213394524 -14130054 - AluSx SINE Alu -3 309 1 423 325 90 5 chr3 213395325 213395525 -14129053 + MIR SINE MIR 34 250 -12 2092 126 7 0 chr3 213395525 213395818 -14128760 - AluSx SINE Alu -17 295 1 989 93 0 0 chr3 213397352 213397481 -14127097 - AluSg/x SINE Alu -7 303 175 2235 102 20 0 chr3 213398967 213399319 -14125259 + AluSx SINE Alu 1 358 0 414 301 52 0 chr3 213399849 213399985 -14124593 + MIR SINE MIR 117 259 -3 198 241 0 19 chr3 213400099 213400153 -14124425 - MER5A DNA MER1_type -1 188 136 2421 79 13 3 chr3 213400188 213400492 -14124086 - AluSq SINE Alu -6 307 1 2468 79 3 0 chr3 213401394 213401697 -14122881 - AluSp SINE Alu -9 304 1 23 33 0 0 chr3 213401697 213401727 -14122851 + AT_rich Low_complexity Low_complexity 1 30 0 1897 170 0 10 chr3 213401984 213402284 -14122294 + AluSx SINE Alu 1 297 -15 1963 159 0 9 chr3 213402403 213402718 -14121860 + AluSx SINE Alu 1 312 0 438 290 48 35 chr3 213402938 213403169 -14121409 + L1ME LINE L1 5310 5543 -578 2093 123 31 3 chr3 213403202 213403494 -14121084 - AluSx SINE Alu -12 300 1 650 188 0 8 chr3 213404321 213404438 -14120140 + FLAM_A SINE Alu 1 116 -17 1690 166 11 14 chr3 213404466 213404611 -14119967 - AluJb SINE Alu -35 277 132 2422 92 0 13 chr3 213404611 213404927 -14119651 - AluSq SINE Alu -1 312 1 1690 166 11 14 chr3 213404927 213405059 -14119519 - AluJb SINE Alu -180 132 1 2005 124 0 14 chr3 213405409 213405587 -14118991 - AluSx SINE Alu -14 298 124 500 81 68 0 chr3 213405587 213405661 -14118917 + MADE1 DNA Mariner 1 79 -1 2005 124 0 14 chr3 213405661 213405773 -14118805 - AluSx SINE Alu -188 124 12 314 302 54 39 chr3 213405787 213406045 -14118533 - L1MC4a LINE L1 -1865 5943 5682 635 183 8 15 chr3 213406536 213406667 -14117911 + FLAM_C SINE Alu 1 130 -3 279 0 0 0 chr3 213406671 213406702 -14117876 + (CA)n Simple_repeat Simple_repeat 2 32 0 991 133 13 6 chr3 213406751 213406909 -14117669 - AluSp SINE Alu -2 311 153 2435 87 0 0 chr3 213407591 213407891 -14116687 - AluSx SINE Alu -12 300 1 2239 109 0 0 chr3 213408340 213408666 -14115912 - AluSq SINE Alu 0 326 1 2103 117 4 0 chr3 213408684 213408995 -14115583 - AluSg SINE Alu 0 312 1 2309 109 0 13 chr3 213409051 213409363 -14115215 - AluSq SINE Alu -3 310 3 440 111 0 0 chr3 213409729 213409801 -14114777 - Alu SINE Alu 0 312 241 2249 108 0 3 chr3 213410232 213410528 -14114050 + AluSx SINE Alu 1 295 -17 753 147 0 0 chr3 213410770 213410886 -14113692 + FLAM_C SINE Alu 28 143 0 619 108 0 0 chr3 213411218 213411311 -14113267 + AluSg/x SINE Alu 207 299 -11 1415 105 110 194 chr3 213411311 213411385 -14113193 + MLT1D LTR MaLR 115 194 -311 2116 83 0 0 chr3 213411385 213411651 -14112927 + AluY SINE Alu 32 297 -14 1415 105 110 194 chr3 213411651 213411927 -14112651 + MLT1D LTR MaLR 194 425 -80 2422 85 0 0 chr3 213411927 213412221 -14112357 + AluSx SINE Alu 1 294 -18 1415 105 110 194 chr3 213412221 213412296 -14112282 + MLT1D LTR MaLR 425 505 0 679 154 0 0 chr3 213412540 213412650 -14111928 - AluJb SINE Alu -13 299 190 474 192 0 20 chr3 213412652 213412751 -14111827 - AluSc SINE Alu -74 235 139 1198 128 23 0 chr3 213412774 213412946 -14111632 - AluSx SINE Alu -16 294 119 16725 118 17 116 chr3 213413107 213416601 -14107977 - L1P LINE L1 -2987 3159 12 1036 98 0 0 chr3 213416614 213416747 -14107831 - AluSx SINE Alu -180 133 1 186 237 119 0 chr3 213416804 213416863 -14107715 - MIR SINE MIR -1 261 196 2188 120 3 7 chr3 213416957 213417282 -14107296 - AluSp SINE Alu 0 313 1 1026 155 7 0 chr3 213417284 213417439 -14107139 - AluSc SINE Alu -16 293 138 311 232 170 18 chr3 213418058 213418170 -14106408 - L1MC/D LINE L1 -2001 5807 5679 2301 97 0 13 chr3 213418354 213418704 -14105874 + AluSx SINE Alu 5 350 0 1083 132 0 0 chr3 213418708 213418882 -14105696 + (GAA)n Simple_repeat Simple_repeat 3 176 0 294 303 9 18 chr3 213419308 213419417 -14105161 + MIR3 SINE MIR 69 176 -32 291 203 0 0 chr3 213420183 213420262 -14104316 + (TA)n Simple_repeat Simple_repeat 2 80 0 971 302 16 40 chr3 213420300 213420727 -14103851 - L1ME3A LINE L1 -266 5904 5488 8579 43 8 0 chr3 213420801 213421762 -14102816 + LTR5 LTR ERVK 1 969 0 791 262 149 29 chr3 213421814 213422222 -14102356 - L1MEd LINE L1 -5634 485 29 1679 178 89 0 chr3 213422634 213422971 -14101607 + L1MB8 LINE L1 4646 5012 -1134 5451 50 16 9 chr3 213423038 213424261 -14100317 + SVA Other Other 1 1366 -20 216 0 0 0 chr3 213424264 213424288 -14100290 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 3652 163 56 93 chr3 213424314 213424327 -14100251 + L1MB8 LINE L1 5274 5286 -892 1909 149 0 3 chr3 213424327 213424615 -14099963 + AluJb SINE Alu 1 287 -25 3652 163 56 93 chr3 213424615 213424873 -14099705 + L1MB8 LINE L1 5286 5552 -626 253 133 0 22 chr3 213424873 213424918 -14099660 + Alu SINE Alu 254 297 -5 3652 163 56 93 chr3 213424918 213425140 -14099438 + L1MB8 LINE L1 5552 5781 -397 2534 172 31 86 chr3 213425140 213425266 -14099312 + MER44D DNA MER2_type 1 132 -2355 1915 167 0 3 chr3 213425266 213425566 -14099012 + AluSx SINE Alu 1 299 -13 2534 172 31 86 chr3 213425566 213426021 -14098557 + MER44D DNA MER2_type 132 605 0 3652 163 56 93 chr3 213426021 213426420 -14098158 + L1MB8 LINE L1 5781 6178 0 1949 114 20 33 chr3 213426723 213426857 -14097721 + AluSx SINE Alu 1 135 -177 2345 98 3 0 chr3 213426857 213427153 -14097425 + AluSg SINE Alu 1 297 -13 1949 114 20 33 chr3 213427153 213427324 -14097254 + AluSx SINE Alu 135 302 -10 833 210 80 6 chr3 213427336 213427512 -14097066 - MER5A DNA MER1_type 0 189 1 767 284 77 15 chr3 213428260 213428587 -14095991 - HAL1 LINE L1 -2150 357 11 882 301 63 10 chr3 213428640 213429038 -14095540 - L1ME3A LINE L1 -303 5867 5449 584 245 40 35 chr3 213429073 213429273 -14095305 + L1MC4a LINE L1 7215 7415 -393 230 274 205 17 chr3 213429339 213429573 -14095005 + L1MC4 LINE L1 7495 7772 -270 43 47 0 0 chr3 213429580 213429644 -14094934 + AT_rich Low_complexity Low_complexity 1 64 0 2329 110 3 0 chr3 213429829 213430137 -14094441 + AluSx SINE Alu 1 309 -3 628 95 53 0 chr3 213430149 213430244 -14094334 - L1MB4 LINE L1 0 6180 6081 274 331 8 0 chr3 213430254 213430269 -14094309 - L1MA10 LINE L1 -2 6332 6318 2243 235 107 34 chr3 213430269 213430382 -14094196 - L1ME2 LINE L1 -9 6155 6052 2123 83 4 4 chr3 213430382 213430648 -14093930 + AluSc SINE Alu 20 285 -24 524 15 15 0 chr3 213430648 213430713 -14093865 + (TAGA)n Simple_repeat Simple_repeat 4 69 0 2079 112 14 7 chr3 213430721 213431006 -14093572 + AluSg SINE Alu 1 287 -23 2243 235 107 34 chr3 213431006 213431054 -14093524 - L1ME2 LINE L1 -118 6046 6003 198 0 0 0 chr3 213431054 213431076 -14093502 + (CCA)n Simple_repeat Simple_repeat 2 23 0 2243 235 107 34 chr3 213431076 213431725 -14092853 - L1ME2 LINE L1 -161 6003 5274 1503 192 103 14 chr3 213431726 213432086 -14092492 - L1ME2 LINE L1 -1305 4841 4450 1679 30 10 5 chr3 213432188 213432386 -14092192 + AluY SINE Alu 106 304 -7 385 276 40 22 chr3 213432435 213432663 -14091915 - L1ME3A LINE L1 -837 5309 5078 955 196 6 0 chr3 213432686 213432854 -14091724 + FRAM SINE Alu 1 166 -10 448 323 36 46 chr3 213432854 213433374 -14091204 - L1ME3A LINE L1 -1112 5034 4520 7227 58 16 44 chr3 213433560 213435402 -14089176 - SVA Other Other -552 1386 1 2507 64 0 0 chr3 213435577 213435874 -14088704 + AluY SINE Alu 1 297 -14 774 189 77 0 chr3 213435980 213436123 -14088455 - FRAM SINE Alu -16 160 7 987 179 198 77 chr3 213436198 213436551 -14088027 + MSTD LTR MaLR 1 396 0 21 0 0 0 chr3 213438270 213438291 -14086287 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 213438422 213438452 -14086126 + AT_rich Low_complexity Low_complexity 1 30 0 305 265 53 100 chr3 213439311 213439481 -14085097 + L1ME4a LINE L1 5762 5923 -198 595 158 59 0 chr3 213439494 213439595 -14084983 - FLAM_C SINE Alu -21 122 16 2171 107 0 0 chr3 213439679 213439978 -14084600 + AluSx SINE Alu 1 299 -13 2167 102 3 0 chr3 213439989 213440284 -14084294 + AluSq SINE Alu 8 303 -10 2339 78 0 10 chr3 213440313 213440620 -14083958 + AluSc SINE Alu 1 304 -5 1668 174 10 23 chr3 213440699 213441003 -14083575 + AluJo SINE Alu 3 302 -10 1931 128 7 3 chr3 213441082 213441371 -14083207 + AluSx SINE Alu 1 290 -22 883 129 0 23 chr3 213441505 213441637 -14082941 - FLAM_C SINE Alu -3 130 2 2107 108 0 0 chr3 213441666 213441953 -14082625 - AluSx SINE Alu -25 287 1 311 250 42 52 chr3 213442050 213442093 -14082485 - L1MD3 LINE L1 -177 7818 7776 3486 117 45 0 chr3 213442093 213442623 -14081955 - MER41C LTR ERV1 0 554 1 311 250 42 52 chr3 213442623 213442675 -14081903 - L1MD3 LINE L1 -219 7776 7724 1001 185 22 0 chr3 213442675 213442859 -14081719 - AluJo SINE Alu -4 308 121 1174 148 0 0 chr3 213442882 213443071 -14081507 - AluSx SINE Alu -3 309 121 388 95 32 0 chr3 213443071 213443134 -14081444 - L1MD1 LINE L1 -255 5987 5923 843 111 0 0 chr3 213443216 213443333 -14081245 - AluSx SINE Alu -196 117 1 3343 158 37 37 chr3 213443333 213443465 -14081113 - L1MD1 LINE L1 -201 6041 5910 2113 96 4 0 chr3 213443465 213443779 -14080799 - AluSx SINE Alu 0 315 1 3343 158 37 37 chr3 213443779 213444119 -14080459 - L1MD1 LINE L1 -332 5910 5571 2072 117 3 0 chr3 213444119 213444427 -14080151 + AluSx SINE Alu 3 311 -1 3343 158 37 37 chr3 213444427 213444702 -14079876 - L1MD1 LINE L1 -671 5571 5297 665 122 28 28 chr3 213444702 213444809 -14079769 - U6 snRNA snRNA 0 107 1 3343 158 37 37 chr3 213444809 213444856 -14079722 - L1MD1 LINE L1 -945 5297 5251 1985 124 0 0 chr3 213444856 213445155 -14079423 - AluSx SINE Alu -13 299 1 3343 158 37 37 chr3 213445155 213445308 -14079270 - L1MD1 LINE L1 -991 5251 5159 229 286 12 12 chr3 213445468 213445552 -14079026 + GA-rich Low_complexity Low_complexity 2 85 0 206 71 0 71 chr3 213446441 213446483 -14078095 + (GGAGAA)n Simple_repeat Simple_repeat 1 39 0 256 104 83 0 chr3 213446492 213446540 -14078038 - L1MD1 LINE L1 -974 5172 5121 * 804 177 36 76 chr3 213446535 213446696 -14077882 - L1MDa LINE L1 -5290 1250 1084 2108 102 3 10 chr3 213446696 213447000 -14077578 - AluSx SINE Alu -10 302 1 804 177 36 76 chr3 213447000 213447020 -14077558 - L1MDa LINE L1 -5456 1084 1065 2358 60 0 3 chr3 213447020 213447320 -14077258 - AluY SINE Alu -12 299 1 804 177 36 76 chr3 213447320 213447386 -14077192 - L1MDa LINE L1 -5475 1065 1012 2330 99 0 0 chr3 213447407 213447719 -14076859 - AluSx SINE Alu 0 312 1 3559 154 55 24 chr3 213447820 213448201 -14076377 - L1MB3 LINE L1 -3 6180 5767 1784 158 0 16 chr3 213448201 213448511 -14076067 - AluJb SINE Alu -7 305 1 3559 154 55 24 chr3 213448511 213448825 -14075753 - L1MB3 LINE L1 -416 5767 5464 667 168 18 0 chr3 213448829 213448942 -14075636 + FLAM_C SINE Alu 2 116 -27 650 171 8 8 chr3 213448974 213449095 -14075483 - L1MB3 LINE L1 -678 5443 5358 2281 250 62 68 chr3 213449105 213449701 -14074877 - L1MDa LINE L1 -5713 827 236 2481 55 0 3 chr3 213449701 213450013 -14074565 - AluY SINE Alu 0 311 1 2281 250 62 68 chr3 213450013 213450248 -14074330 - L1MDa LINE L1 -6304 236 1 1634 156 29 19 chr3 213450359 213450666 -14073912 + AluSx SINE Alu 1 310 -2 337 204 83 56 chr3 213450790 213450898 -14073680 + L1MC4 LINE L1 6599 6709 -1333 * 353 206 62 72 chr3 213450814 213450911 -14073667 - L1MC4 LINE L1 -1333 6709 6614 312 231 60 83 chr3 213450888 213451055 -14073523 + L1MC4 LINE L1 1995 6982 -1340 * 2228 84 7 0 chr3 213451058 213451357 -14073221 + AluSp SINE Alu 1 301 -12 1976 110 7 3 chr3 213451585 213451867 -14072711 - AluSx SINE Alu -18 294 12 517 151 23 0 chr3 213451967 213452053 -14072525 + Tigger7 DNA MER2_type 2402 2489 -2 2049 175 77 18 chr3 213452194 213452583 -14071995 + MSTB LTR MaLR 1 412 -14 1740 62 13 0 chr3 213452611 213452836 -14071742 - AluY SINE Alu -14 297 70 1123 200 106 69 chr3 213452992 213453342 -14071236 - MLT1A1 LTR MaLR -2 363 1 467 274 22 7 chr3 213453371 213453506 -14071072 - MER5A DNA MER1_type -51 138 2 1918 122 27 14 chr3 213453686 213453844 -14070734 - AluSx SINE Alu -13 299 134 2306 92 3 0 chr3 213453844 213454148 -14070430 - AluSp SINE Alu -8 305 1 1918 122 27 14 chr3 213454148 213454284 -14070294 - AluSx SINE Alu -178 134 1 1179 346 21 17 chr3 213454357 213454938 -14069640 - HERV16 LTR ERVL -1480 4174 3592 403 189 22 22 chr3 213454943 213455033 -14069545 + MLT1E LTR MaLR 1 90 -503 1112 258 31 59 chr3 213455076 213455438 -14069140 - HERV16 LTR ERVL -4273 723 371 1979 136 3 0 chr3 213455438 213455746 -14068832 - AluSq SINE Alu -4 309 1 1112 258 31 59 chr3 213455746 213455770 -14068808 - HERV16 LTR ERVL -4625 371 348 2365 73 0 6 chr3 213455945 213456258 -14068320 - AluY SINE Alu 0 311 1 2433 59 0 0 chr3 213456277 213456580 -14067998 - AluY SINE Alu -8 303 1 812 213 12 6 chr3 213456842 213457006 -14067572 - FRAM SINE Alu -1 165 1 2132 118 0 0 chr3 213457404 213457701 -14066877 + AluSc SINE Alu 3 299 -10 1759 139 10 7 chr3 213457922 213458210 -14066368 - AluJb SINE Alu -23 289 1 252 331 45 45 chr3 213458239 213458272 -14066306 - MIR SINE MIR -13 249 217 2035 117 0 13 chr3 213458272 213458571 -14066007 - AluSx SINE Alu -12 300 6 252 331 45 45 chr3 213458571 213458670 -14065908 - MIR SINE MIR -44 218 117 274 88 62 62 chr3 213458885 213459045 -14065533 + (TTATA)n Simple_repeat Simple_repeat 5 164 0 27 29 0 0 chr3 213459057 213459091 -14065487 + AT_rich Low_complexity Low_complexity 1 34 0 547 255 64 29 chr3 213459300 213459504 -14065074 - MER112 DNA MER1_type 0 260 50 198 264 35 69 chr3 213459712 213459799 -14064779 + MIR3 SINE MIR 104 187 -21 181 192 269 0 chr3 213460992 213461070 -14063508 + MIR SINE MIR 90 188 -74 243 317 12 6 chr3 213461324 213461421 -14063157 + GA-rich Low_complexity Low_complexity 1 97 0 1793 109 0 4 chr3 213462948 213463213 -14061365 - AluSx SINE Alu -48 264 1 1259 201 232 37 chr3 213463381 213463869 -14060709 - LTR50 LTR ERVL -2 793 211 279 79 0 0 chr3 213464889 213464927 -14059651 + (TATG)n Simple_repeat Simple_repeat 3 40 0 443 308 110 4 chr3 213465021 213465258 -14059320 - L2 LINE L2 -105 3167 2906 225 65 0 0 chr3 213465967 213465998 -14058580 + (TG)n Simple_repeat Simple_repeat 1 31 0 1919 172 51 20 chr3 213466069 213466354 -14058224 + MLT1A1 LTR MaLR 1 301 -64 2114 121 0 0 chr3 213466354 213466661 -14057917 - AluSx SINE Alu -5 307 1 1919 172 51 20 chr3 213466661 213466729 -14057849 + MLT1A1 LTR MaLR 301 365 0 281 264 14 0 chr3 213467699 213467771 -14056807 - MER103 DNA DNA -83 83 11 520 296 62 14 chr3 213467791 213468072 -14056506 - MLT1J2 LTR MaLR -130 381 65 245 171 0 0 chr3 213468138 213468179 -14056399 - MIR SINE MIR -138 70 30 1056 152 81 20 chr3 213468211 213468409 -14056169 - MER6B DNA MER2_type 0 210 1 190 255 21 0 chr3 213468415 213468462 -14056116 - L2 LINE L2 -9 3263 3216 261 0 0 0 chr3 213468784 213468813 -14055765 + (TA)n Simple_repeat Simple_repeat 2 30 0 2107 115 10 0 chr3 213469111 213469416 -14055162 + AluSq SINE Alu 6 313 0 361 245 11 21 chr3 213469437 213469531 -14055047 + MER89 LTR ERV1 447 539 -20 5382 133 45 13 chr3 213469647 213470634 -14053944 + L1PA16 LINE L1 5155 6166 0 327 343 142 10 chr3 213470645 213470849 -14053729 + L1MC/D LINE L1 5070 5300 -846 1198 169 40 11 chr3 213470855 213471042 -14053536 + L1MA4 LINE L1 6017 6216 -84 2041 129 0 0 chr3 213471042 213471336 -14053242 - AluSx SINE Alu -18 294 1 1198 169 40 11 chr3 213471336 213471420 -14053158 + L1MA4 LINE L1 6216 6296 -4 720 283 76 27 chr3 213471449 213471816 -14052762 + L1MC/D LINE L1 5315 5699 -2109 751 197 101 64 chr3 213471820 213471848 -14052730 - L1MC/D LINE L1 -547 5695 5669 2318 91 0 0 chr3 213471848 213472155 -14052423 - AluSx SINE Alu -5 307 1 751 197 101 64 chr3 213472155 213472329 -14052249 - L1MC/D LINE L1 -573 5669 5482 1736 171 0 10 chr3 213472329 213472634 -14051944 - AluSx SINE Alu -10 302 1 751 197 101 64 chr3 213472634 213472648 -14051930 - L1MC/D LINE L1 -760 5482 5470 445 123 0 114 chr3 213472700 213472748 -14051830 - L1MC1 LINE L1 -179 6154 6125 1885 151 6 3 chr3 213472748 213473060 -14051518 - AluSq SINE Alu 0 313 1 445 123 0 114 chr3 213473060 213473125 -14051453 - L1MC1 LINE L1 -208 6125 6054 1191 217 22 0 chr3 213473127 213473536 -14051042 - L1MC/D LINE L1 -743 5403 5068 317 222 28 0 chr3 213473538 213473610 -14050968 - MLT1D LTR MaLR 0 505 432 2280 90 7 0 chr3 213474384 213474694 -14049884 + AluSp SINE Alu 1 312 -1 2124 98 0 7 chr3 213475305 213475601 -14048977 - AluSx SINE Alu -18 294 1 302 269 149 35 chr3 213475691 213475832 -14048746 + MIR SINE MIR 9 165 -97 445 184 68 110 chr3 213475862 213475969 -14048609 - L2 LINE L2 0 3313 3214 2031 128 10 0 chr3 213475969 213476266 -14048312 - AluSq SINE Alu -13 300 1 445 184 68 110 chr3 213476266 213476321 -14048257 - L2 LINE L2 -99 3214 3158 265 307 0 13 chr3 213478314 213478389 -14046189 - L2 LINE L2 -1 3271 3198 2190 115 0 3 chr3 213478473 213478786 -14045792 + AluSx SINE Alu 1 312 0 1826 92 4 0 chr3 213479301 213479541 -14045037 - AluSc SINE Alu -68 241 1 490 107 0 0 chr3 213479550 213479625 -14044953 + AluSp/q SINE Alu 226 300 -13 1555 169 7 7 chr3 213479649 213479921 -14044657 - AluJo SINE Alu -23 289 18 277 271 12 0 chr3 213480138 213480304 -14044274 + (TG)n Simple_repeat Simple_repeat 2 169 0 2262 109 0 0 chr3 213480454 213480766 -14043812 - AluSq SINE Alu -1 312 1 281 254 142 15 chr3 213481108 213481242 -14043336 + MIR SINE MIR 100 250 -12 296 309 24 12 chr3 213481258 213481342 -14043236 + MIR3 SINE MIR 119 203 -5 1764 138 50 7 chr3 213481346 213481629 -14042949 - AluSx SINE Alu -17 295 1 306 321 28 0 chr3 213482066 213482175 -14042403 + MIR SINE MIR 32 143 -65 389 224 24 0 chr3 213482184 213482269 -14042309 - MIR SINE MIR -4 258 172 2100 110 0 3 chr3 213482985 213483285 -14041293 + AluSx SINE Alu 1 299 -13 1032 53 0 0 chr3 213483294 213483425 -14041153 + (GGAA)n Simple_repeat Simple_repeat 4 134 0 214 136 182 0 chr3 213483496 213483540 -14041038 - MIR SINE MIR -111 151 100 2097 115 0 10 chr3 213485085 213485390 -14039188 + AluSx SINE Alu 1 302 -10 487 282 69 56 chr3 213485390 213485695 -14038883 + L1ME LINE L1 5418 5726 -395 24 32 0 0 chr3 213485711 213485742 -14038836 + AT_rich Low_complexity Low_complexity 1 31 0 209 136 34 34 chr3 213485997 213486056 -14038522 + (TA)n Simple_repeat Simple_repeat 1 59 0 262 203 13 13 chr3 213486691 213486770 -14037808 + CT-rich Low_complexity Low_complexity 4 82 0 195 340 24 77 chr3 213486883 213486933 -14037645 - L2 LINE L2 -122 3150 3099 1842 136 206 17 chr3 213486933 213487120 -14037458 - MSTA LTR MaLR 0 428 278 249 33 0 0 chr3 213487120 213487150 -14037428 + (GA)n Simple_repeat Simple_repeat 1 30 0 1842 136 206 17 chr3 213487150 213487322 -14037256 - MSTA LTR MaLR -150 278 1 195 340 24 77 chr3 213487322 213487480 -14037098 - L2 LINE L2 -173 3099 2953 195 129 0 0 chr3 213487545 213487576 -14037002 + (TC)n Simple_repeat Simple_repeat 2 32 0 333 318 9 0 chr3 213487641 213487748 -14036830 + GA-rich Low_complexity Low_complexity 1 108 0 193 376 129 16 chr3 213487831 213488025 -14036553 - L2 LINE L2 -30 3242 3027 224 335 105 20 chr3 213488852 213489004 -14035574 - L2 LINE L2 -182 3090 2926 279 79 0 0 chr3 213489912 213489950 -14034628 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 469 246 38 25 chr3 213490070 213490242 -14034336 - MIR SINE MIR -18 190 21 2016 129 3 0 chr3 213490558 213490852 -14033726 - AluSx SINE Alu -17 295 1 1729 127 4 0 chr3 213491540 213491800 -14032778 - AluSg SINE Alu -1 309 49 305 246 33 142 chr3 213491872 213492112 -14032466 - MLT1K LTR MaLR 0 588 375 353 284 63 8 chr3 213492238 213492365 -14032213 - MLT1K LTR MaLR -287 301 168 253 260 52 13 chr3 213492402 213492479 -14032099 - MLT1K LTR MaLR -508 80 1 2043 207 55 116 chr3 213492777 213493069 -14031509 - L1MDa LINE L1 -3608 2932 2624 1652 174 33 0 chr3 213493069 213493368 -14031210 - AluSg SINE Alu -1 309 1 2043 207 55 116 chr3 213493368 213494523 -14030055 - L1MDa LINE L1 -3916 2624 1581 759 159 0 8 chr3 213494528 213494654 -14029924 - FLAM_C SINE Alu -9 134 10 697 93 21 0 chr3 213494658 213494755 -14029823 + MSTD LTR MaLR 298 396 0 225 0 0 0 chr3 213494909 213494934 -14029644 + (GA)n Simple_repeat Simple_repeat 2 26 0 1910 131 40 0 chr3 213495096 213495393 -14029185 + AluSx SINE Alu 1 309 -3 21 36 0 0 chr3 213495679 213495707 -14028871 + AT_rich Low_complexity Low_complexity 1 28 0 561 310 38 5 chr3 213495722 213495906 -14028672 - MIR SINE MIR -54 208 19 2024 110 0 0 chr3 213496267 213496582 -14027996 + AluSx SINE Alu 1 315 0 267 273 36 43 chr3 213496583 213496757 -14027821 + L1P LINE L1 3962 4134 -2012 392 284 20 20 chr3 213496866 213496968 -14027610 + L1MC4 LINE L1 6609 6710 -1332 1918 132 4 0 chr3 213497858 213498139 -14026439 + AluSx SINE Alu 4 285 -27 239 264 38 19 chr3 213498156 213498262 -14026316 + L1M4 LINE L1 4761 4868 -1278 1620 15 0 0 chr3 213498343 213498680 -14025898 + (TCTCCC)n Simple_repeat Simple_repeat 1 337 0 5843 69 14 73 chr3 213498680 213500703 -14023875 + SVA Other Other 71 1386 0 5008 132 28 38 chr3 213500703 213501585 -14022993 - LTR5 LTR ERVK -92 877 1 1069 122 0 0 chr3 213501587 213501743 -14022835 + AluSq SINE Alu 144 299 -14 324 0 0 0 chr3 213502280 213502316 -14022262 + (TG)n Simple_repeat Simple_repeat 2 37 0 189 0 0 0 chr3 213502404 213502425 -14022153 + (A)n Simple_repeat Simple_repeat 1 21 0 315 167 0 0 chr3 213502435 213502489 -14022089 + U6 snRNA snRNA 1 54 -53 282 73 0 0 chr3 213502559 213502600 -14021978 + (A)n Simple_repeat Simple_repeat 1 41 0 2062 76 59 3 chr3 213503133 213503423 -14021155 - AluY SINE Alu -5 306 1 2064 107 0 10 chr3 213503450 213503750 -14020828 - AluY SINE Alu -10 301 5 303 232 170 18 chr3 213503934 213504046 -14020532 + L1ME4a LINE L1 5679 5807 -2001 402 230 71 120 chr3 213504097 213504380 -14020198 + L1ME4a LINE L1 5850 6118 -3 2276 82 10 0 chr3 213504899 213505191 -14019387 + AluSg SINE Alu 1 295 -15 1042 260 102 60 chr3 213505344 213505470 -14019108 + L1MC4a LINE L1 5371 5490 -2318 1886 159 3 0 chr3 213505470 213505771 -14018807 + AluJb SINE Alu 1 302 -10 1042 260 102 60 chr3 213505771 213506016 -14018562 + L1MC4a LINE L1 5490 5723 -2085 2213 77 0 26 chr3 213506016 213506351 -14018227 + AluY SINE Alu 1 327 0 1042 260 102 60 chr3 213506351 213506541 -14018037 + L1MC4a LINE L1 5723 5960 -1848 1176 131 4 102 chr3 213506634 213506688 -14017890 - MLT1B LTR MaLR -5 385 327 8236 43 2 0 chr3 213506688 213507655 -14016923 + LTR5 LTR ERVK 1 969 0 1176 131 4 102 chr3 213507655 213507844 -14016734 - MLT1B LTR MaLR -63 327 166 1926 122 0 3 chr3 213507845 213508131 -14016447 - AluSx SINE Alu -14 298 14 2179 96 7 0 chr3 213508358 213508650 -14015928 - AluSq SINE Alu -19 294 1 1607 129 50 0 chr3 213508685 213508926 -14015652 + MER9 LTR ERVK 1 253 -258 497 271 159 48 chr3 213509259 213509631 -14014947 + LTR16A LTR ERVL 14 426 -24 183 262 0 0 chr3 213509947 213509989 -14014589 + L2 LINE L2 2686 2727 -587 465 283 200 5 chr3 213510243 213510448 -14014130 - LTR16A LTR ERVL -7 443 199 349 151 82 0 chr3 213510450 213510523 -14014055 - MSTB2 LTR MaLR 0 457 379 5032 81 84 12 chr3 213510536 213511343 -14013235 + SVA Other Other 1 865 -521 2039 122 0 0 chr3 213511743 213512030 -14012548 - AluSx SINE Alu -25 287 1 422 185 25 34 chr3 213512031 213512150 -14012428 - L1MC3 LINE L1 -6 7779 7662 289 273 59 78 chr3 213512298 213512496 -14012082 + L1MEd LINE L1 650 843 -5276 931 118 0 22 chr3 213512496 213512631 -14011947 + FLAM_C SINE Alu 2 133 0 289 273 59 78 chr3 213512631 213512688 -14011890 + L1MEd LINE L1 843 900 -5219 1953 101 4 4 chr3 213512697 213512974 -14011604 + AluSx SINE Alu 1 277 -35 195 42 0 0 chr3 213512981 213513005 -14011573 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 1443 101 10 0 chr3 213513453 213513662 -14010916 - AluSq SINE Alu -98 215 5 287 323 32 38 chr3 213513834 213513991 -14010587 + MIR3 SINE MIR 6 161 -47 381 292 56 25 chr3 213513991 213514152 -14010426 - MER5B DNA MER1_type -1 177 12 476 267 31 27 chr3 213515986 213516167 -14008411 - MIR SINE MIR -47 215 36 434 286 95 12 chr3 213516696 213516864 -14007714 - MIR SINE MIR -73 189 8 2126 85 3 0 chr3 213517150 213517476 -14007102 - AluSp SINE Alu 0 327 1 2271 89 0 10 chr3 213517790 213518103 -14006475 + AluSg SINE Alu 1 310 0 182 346 148 10 chr3 213518218 213518319 -14006259 + MIR SINE MIR 31 145 -117 2296 90 0 0 chr3 213518600 213518901 -14005677 + AluSx SINE Alu 3 303 -9 435 299 164 19 chr3 213519541 213519755 -14004823 + MIR SINE MIR 2 246 -16 231 371 0 21 chr3 213519916 213520013 -14004565 - L2 LINE L2 -219 3053 2959 278 264 138 30 chr3 213520029 213520325 -14004253 + L1ME4a LINE L1 5672 5999 -122 300 233 0 0 chr3 213520350 213520410 -14004168 + HAL1b LINE L1 1283 1342 -6 289 167 0 0 chr3 213520423 213520477 -14004101 - L1MB4 LINE L1 0 6180 6127 236 265 44 0 chr3 213521194 213521262 -14003316 - L2 LINE L2 0 3272 3202 258 294 63 28 chr3 213521287 213521430 -14003148 - MIR SINE MIR -25 237 90 1828 269 101 46 chr3 213521542 213522828 -14001750 + L1ME LINE L1 306 1623 -4759 2058 123 13 0 chr3 213522828 213523128 -14001450 + AluSx SINE Alu 1 304 -8 1828 269 101 46 chr3 213523128 213523172 -14001406 + L1ME LINE L1 1623 1663 -4719 688 27 45 18 chr3 213523174 213523285 -14001293 + (GAAA)n Simple_repeat Simple_repeat 3 116 0 352 205 26 103 chr3 213523287 213523404 -14001174 + L1ME LINE L1 1543 1650 -4734 2612 13 0 13 chr3 213523937 213524243 -14000335 - AluYa5 SINE Alu -8 303 2 16434 77 5 5 chr3 213524828 213527825 -13996753 + L1PA7 LINE L1 3137 6150 -4 1086 157 0 0 chr3 213527830 213528002 -13996576 + AluSg/x SINE Alu 127 298 -12 315 286 146 29 chr3 213528096 213528480 -13996098 - L2 LINE L2 -229 3043 2612 3977 176 36 125 chr3 213528568 213528880 -13995698 + Charlie1 DNA MER1_type 45 383 -2378 1645 176 0 17 chr3 213528880 213529175 -13995403 - AluJb SINE Alu -18 294 5 3977 176 36 125 chr3 213529175 213529659 -13994919 + Charlie1 DNA MER1_type 383 908 -1853 1773 204 46 32 chr3 213529659 213530120 -13994458 + MLT1C LTR MaLR 1 467 0 3977 176 36 125 chr3 213530120 213530678 -13993900 + Charlie1 DNA MER1_type 908 2590 -171 38 0 0 0 chr3 213530729 213530767 -13993811 + AT_rich Low_complexity Low_complexity 1 38 0 557 218 35 0 chr3 213531278 213531420 -13993158 + Charlie1 DNA MER1_type 2614 2760 -1 1429 171 19 59 chr3 213531441 213531762 -13992816 + AluJo SINE Alu 1 308 -4 444 347 107 20 chr3 213531846 213532238 -13992340 - L2 LINE L2 -927 2387 1962 1007 138 54 0 chr3 213532364 213532531 -13992047 - AluSx SINE Alu -10 302 127 243 171 40 0 chr3 213532538 213532614 -13991964 + (TA)n Simple_repeat Simple_repeat 1 79 0 874 110 16 0 chr3 213532616 213532743 -13991835 - AluSx SINE Alu -183 129 1 2224 89 0 10 chr3 213533088 213533391 -13991187 + AluSc SINE Alu 1 300 -9 2266 182 36 70 chr3 213533653 213534235 -13990343 - LTR6A LTR ERV1 0 564 3 256 169 0 31 chr3 213534235 213534300 -13990278 - HERVS71 LTR ERV1 -5 8973 8911 243 358 0 0 chr3 213534783 213534878 -13989700 - L2 LINE L2 -534 2780 2686 497 271 159 48 chr3 213535194 213535566 -13989012 - LTR16A LTR ERVL -24 426 14 435 290 6 12 chr3 213535899 213536061 -13988517 - MER9 LTR ERVK -258 253 93 399 183 0 61 chr3 213536303 213536418 -13988160 + L1PA10 LINE L1 6061 6168 0 242 295 26 0 chr3 213536424 213536502 -13988076 + MIR SINE MIR 106 185 -77 2493 280 92 82 chr3 213536509 213537620 -13986958 - L2 LINE L2 -4 3309 2082 791 78 0 0 chr3 213537620 213537750 -13986828 + AluSg/x SINE Alu 186 315 0 2493 280 92 82 chr3 213537750 213538061 -13986517 - L2 LINE L2 -1231 2082 1776 1050 144 33 6 chr3 213538072 213538252 -13986326 + MSTB1 LTR MaLR 248 432 0 1279 219 4 0 chr3 213538253 213538486 -13986092 + MLT1A1 LTR MaLR 132 365 0 602 236 62 0 chr3 213538491 213538635 -13985943 - L2 LINE L2 -1876 1438 1286 223 327 39 39 chr3 213538638 213538742 -13985836 - MER5B DNA MER1_type -3 175 72 2870 161 20 11 chr3 213539653 213540185 -13984393 + LTR27 LTR ERV1 7 1252 -141 391 300 9 0 chr3 213540298 213540408 -13984170 - MIR3 SINE MIR -27 181 70 1803 131 3 76 chr3 213540946 213541274 -13983304 + AluJb SINE Alu 1 304 -8 5243 96 0 18 chr3 213541846 213542573 -13982005 + SVA Other Other 673 1386 0 4973 140 28 43 chr3 213542567 213543457 -13981121 - LTR5 LTR ERVK -92 877 1 * 1113 108 0 0 chr3 213543467 213543615 -13980963 + AluSq SINE Alu 152 299 -14 324 0 0 0 chr3 213544152 213544188 -13980390 + (TG)n Simple_repeat Simple_repeat 2 37 0 380 262 36 129 chr3 213544707 213545093 -13979485 + L1ME4a LINE L1 5501 5850 -271 1208 44 0 0 chr3 213545407 213545544 -13979034 - AluSp/q SINE Alu -21 292 156 195 42 0 0 chr3 213546449 213546473 -13978105 + (CA)n Simple_repeat Simple_repeat 2 25 0 403 241 0 0 chr3 213546873 213546952 -13977626 - MER63 DNA MER1_type -314 748 44 19569 85 10 2 chr3 213547709 213550404 -13974174 - L1P LINE L1 -1255 4891 2177 2090 121 7 26 chr3 213550756 213551062 -13973516 + AluSx SINE Alu 1 300 -12 28 29 0 0 chr3 213551232 213551267 -13973311 + AT_rich Low_complexity Low_complexity 1 35 0 316 212 200 30 chr3 213552512 213552677 -13971901 - MIR SINE MIR -14 248 56 2201 99 0 3 chr3 213553035 213553362 -13971216 - AluSx SINE Alu 0 326 1 234 178 22 0 chr3 213553486 213553531 -13971047 + HAL1b LINE L1 999 1044 -304 1634 143 35 0 chr3 213553531 213553789 -13970789 - AluSg SINE Alu -3 307 41 207 270 207 0 chr3 213554678 213554789 -13969789 + MIR SINE MIR 31 164 -98 2845 207 56 55 chr3 213554881 213555563 -13969015 - L1ME1 LINE L1 -6 6160 5473 2336 103 0 3 chr3 213555563 213555875 -13968703 - AluSx SINE Alu -1 311 1 2845 207 56 55 chr3 213555875 213556148 -13968430 - L1ME1 LINE L1 -693 5473 5202 245 344 80 12 chr3 213556213 213556376 -13968202 - L2 LINE L2 -181 3091 2918 2645 216 141 43 chr3 213556484 213556727 -13967851 - L1MD2 LINE L1 0 6359 6141 2186 114 0 29 chr3 213556727 213557043 -13967535 - AluY SINE Alu -2 309 3 2645 216 141 43 chr3 213557043 213557617 -13966961 - L1MD2 LINE L1 -218 6141 5462 2070 102 0 31 chr3 213557622 213557916 -13966662 - AluSq SINE Alu -24 289 5 2144 122 0 0 chr3 213559300 213559587 -13964991 - AluSx SINE Alu -17 295 9 2274 107 3 3 chr3 213559621 213559930 -13964648 - AluSc SINE Alu 0 309 1 229 187 24 102 chr3 213560044 213560198 -13964380 + L1MC5 LINE L1 7566 7708 -253 1959 109 53 11 chr3 213560198 213560482 -13964096 - AluSg SINE Alu -14 296 1 229 187 24 102 chr3 213560482 213560493 -13964085 + L1MC5 LINE L1 7708 7718 -243 1155 135 14 19 chr3 213560601 213560808 -13963770 - AluSq SINE Alu -107 206 1 942 174 0 0 chr3 213560894 213561049 -13963529 - FRAM SINE Alu -24 152 1 692 210 85 5 chr3 213561051 213561251 -13963327 - L1MC5 LINE L1 -37 7924 7709 27 49 0 0 chr3 213561267 213561308 -13963270 + AT_rich Low_complexity Low_complexity 1 41 0 207 232 0 0 chr3 213561403 213561459 -13963119 + GA-rich Low_complexity Low_complexity 3 58 0 236 263 177 20 chr3 213561462 213561660 -13962918 + L1ME LINE L1 5571 5799 -322 1434 238 75 104 chr3 213561819 213562954 -13961624 - L1MDb LINE L1 -4452 1628 565 189 0 0 0 chr3 213562954 213562975 -13961603 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1434 238 75 104 chr3 213562975 213563087 -13961491 - L1MDb LINE L1 -5515 565 451 245 143 0 100 chr3 213563233 213563303 -13961275 - L1MDb LINE L1 -5693 377 315 927 226 68 0 chr3 213563788 213564009 -13960569 + MIR SINE MIR 11 246 -16 287 344 60 9 chr3 213564305 213564520 -13960058 + L2 LINE L2 2666 2891 -423 354 305 107 11 chr3 213564980 213565167 -13959411 + MIR SINE MIR 38 242 -20 224 318 87 24 chr3 213565286 213565412 -13959166 - L2 LINE L2 -559 2755 2622 1600 161 40 62 chr3 213565508 213565880 -13958698 + THE1B LTR MaLR 1 364 0 1049 106 0 14 chr3 213566081 213566223 -13958355 + AluY SINE Alu 1 140 -171 1970 70 4 23 chr3 213566223 213566480 -13958098 + AluY SINE Alu 1 252 -59 1874 188 5 37 chr3 213566950 213567107 -13957471 + MLT1A1 LTR MaLR 1 161 -204 2153 125 0 13 chr3 213567107 213567436 -13957142 + AluSq SINE Alu 1 313 0 1874 188 5 37 chr3 213567436 213567655 -13956923 + MLT1A1 LTR MaLR 161 365 0 495 0 0 0 chr3 213568073 213568128 -13956450 + (TA)n Simple_repeat Simple_repeat 1 55 0 942 189 40 0 chr3 213568166 213568341 -13956237 + MSTC LTR MaLR 196 377 -51 242 195 65 52 chr3 213569340 213569417 -13955161 - L1ME LINE L1 -199 5922 5845 819 225 87 17 chr3 213569535 213569694 -13954884 + MIR SINE MIR 14 195 -67 2197 115 0 7 chr3 213569694 213569990 -13954588 + AluSx SINE Alu 1 294 -18 819 225 87 17 chr3 213569990 213570061 -13954517 + MIR SINE MIR 195 260 -2 263 254 0 0 chr3 213570062 213570125 -13954453 - L1ME LINE L1 -2014 5794 5732 897 96 16 8 chr3 213570129 213570254 -13954324 + AluSq/x SINE Alu 17 142 -171 264 305 54 42 chr3 213570467 213570726 -13953852 - L1MC4a LINE L1 -1865 5943 5682 2256 109 3 0 chr3 213570963 213571256 -13953322 - AluSp SINE Alu -18 295 2 279 315 31 8 chr3 213571267 213571394 -13953184 - MIR3 SINE MIR -46 162 33 270 0 0 0 chr3 213571671 213571701 -13952877 + (TTTA)n Simple_repeat Simple_repeat 1 30 0 2351 72 0 0 chr3 213571701 213571978 -13952600 - AluSc SINE Alu -32 277 1 188 196 0 22 chr3 213572013 213572059 -13952519 - MIR SINE MIR -50 212 168 317 254 66 8 chr3 213574100 213574222 -13950356 + L1MCa LINE L1 1936 2064 -4362 2124 107 35 7 chr3 213574222 213574511 -13950067 - AluSx SINE Alu -15 297 1 2208 71 4 0 chr3 213574954 213575220 -13949358 + AluSp SINE Alu 35 301 -12 2454 201 22 11 chr3 213575250 213575845 -13948733 - L1MB4 LINE L1 -223 5957 5175 736 250 136 36 chr3 213575849 213575941 -13948637 - L1ME4a LINE L1 0 6121 6040 1994 138 0 7 chr3 213575941 213576237 -13948341 + AluSx SINE Alu 1 294 -18 736 250 136 36 chr3 213576237 213576616 -13947962 - L1ME4a LINE L1 -81 6040 5603 2062 147 0 0 chr3 213577022 213577328 -13947250 + AluSx SINE Alu 1 306 -6 21 0 0 0 chr3 213577770 213577791 -13946787 + AT_rich Low_complexity Low_complexity 1 21 0 243 61 0 0 chr3 213577845 213577878 -13946700 + (CA)n Simple_repeat Simple_repeat 1 33 0 2152 123 3 22 chr3 213578304 213578622 -13945956 + AluSx SINE Alu 1 312 0 2005 117 21 10 chr3 213578660 213578951 -13945627 + AluSx SINE Alu 1 294 -18 1992 47 4 35 chr3 213579106 213579360 -13945218 + AluY SINE Alu 66 311 0 1987 90 40 87 chr3 213579899 213580222 -13944356 + AluSx SINE Alu 1 308 -4 1536 101 0 23 chr3 213580223 213580489 -13944089 + L1MA4A LINE L1 5223 5482 -743 4357 145 19 25 chr3 213580677 213580956 -13943622 + L1MA4A LINE L1 5504 5783 -520 2255 82 23 20 chr3 213580956 213581262 -13943316 + AluSx SINE Alu 1 307 -5 4357 145 19 25 chr3 213581262 213581787 -13942791 + L1MA4A LINE L1 5783 6303 0 247 257 40 0 chr3 213581791 213581865 -13942713 + MIR SINE MIR 186 262 0 307 300 10 0 chr3 213581938 213582038 -13942540 - MIR SINE MIR -64 198 98 2093 147 3 6 chr3 213582756 213583070 -13941508 - AluSq SINE Alu 0 313 1 473 318 69 13 chr3 213583188 213583421 -13941157 + MIR SINE MIR 2 247 -15 183 161 0 0 chr3 213583595 213583626 -13940952 - MIR SINE MIR -113 149 119 2633 58 0 0 chr3 213583815 213584124 -13940454 + AluY SINE Alu 1 309 -2 302 293 78 24 chr3 213584179 213584346 -13940232 - MIR SINE MIR -38 224 49 371 263 70 13 chr3 213584993 213585149 -13939429 + L1ME4a LINE L1 5887 6051 -70 2355 45 42 3 chr3 213585159 213585447 -13939131 - AluY SINE Alu -12 299 1 255 135 64 128 chr3 213585481 213585622 -13938956 + L1ME4a LINE L1 5942 6073 -48 511 152 95 0 chr3 213585623 213585728 -13938850 - L1MB8 LINE L1 0 6178 6064 825 31 0 92 chr3 213586490 213586882 -13937696 + (TGG)n Simple_repeat Simple_repeat 2 357 0 852 31 0 78 chr3 213586893 213587086 -13937492 + (TGG)n Simple_repeat Simple_repeat 1 178 0 1141 194 117 12 chr3 213588134 213588381 -13936197 + MER39 LTR ERV1 1 273 -434 2381 102 3 0 chr3 213588514 213588819 -13935759 + AluSp SINE Alu 1 306 -7 228 135 0 0 chr3 213588901 213588938 -13935640 + (T)n Simple_repeat Simple_repeat 1 37 0 2180 115 24 0 chr3 213589369 213589665 -13934913 - AluSx SINE Alu -7 305 3 279 54 0 0 chr3 213590096 213590133 -13934445 + (TG)n Simple_repeat Simple_repeat 1 37 0 856 42 0 17 chr3 213590868 213590987 -13933591 + (TTTC)n Simple_repeat Simple_repeat 4 120 0 2064 125 0 4 chr3 213590992 213591273 -13933305 - AluSx SINE Alu -32 280 1 2735 207 62 25 chr3 213592135 213592816 -13931762 + MER39 LTR ERV1 1 706 -1 456 254 62 51 chr3 213593066 213593243 -13931335 + MIR SINE MIR 20 198 -64 2051 124 7 10 chr3 213593569 213593875 -13930703 + AluSq SINE Alu 1 305 -8 226 360 42 35 chr3 213593894 213594045 -13930533 + MIR SINE MIR 1 151 -65 1466 233 89 5 chr3 213594061 213594430 -13930148 + MLT1J2 LTR MaLR 33 432 -18 2471 63 3 0 chr3 213594929 213595230 -13929348 - AluY SINE Alu -7 304 3 903 137 0 22 chr3 213597188 213597327 -13927251 + AluJb SINE Alu 1 136 -176 2431 61 10 0 chr3 213597429 213597724 -13926854 - AluY SINE Alu -13 298 1 22 35 0 0 chr3 213598039 213598068 -13926510 + AT_rich Low_complexity Low_complexity 1 29 0 185 94 31 0 chr3 213598567 213598599 -13925979 + (TG)n Simple_repeat Simple_repeat 1 33 0 361 260 75 14 chr3 213599165 213599311 -13925267 + MIR SINE MIR 8 162 -100 1853 128 29 4 chr3 213599327 213599647 -13924931 - AluSx SINE Alu 0 328 2 195 286 133 29 chr3 213600209 213600314 -13924264 + MIR SINE MIR 30 145 -63 5976 81 15 0 chr3 213600385 213601166 -13923412 + L1PA10 LINE L1 5375 6167 -1 435 175 25 131 chr3 213601331 213601402 -13923176 + MIR SINE MIR 100 146 -116 2167 97 3 27 chr3 213601402 213601702 -13922876 + AluSg SINE Alu 1 293 -17 435 175 25 131 chr3 213601702 213601790 -13922788 + MIR SINE MIR 146 242 -20 199 259 35 17 chr3 213602561 213602619 -13921959 + MIR3 SINE MIR 111 169 -39 221 353 12 12 chr3 213603157 213603242 -13921336 - MIR SINE MIR -61 147 63 217 360 28 22 chr3 213603549 213603727 -13920851 + MIR SINE MIR 20 198 -64 271 325 48 48 chr3 213603859 213604025 -13920553 - MIR SINE MIR -71 191 26 2091 126 3 10 chr3 213604377 213604686 -13919892 + AluSx SINE Alu 1 307 -5 180 111 0 0 chr3 213605686 213605713 -13918865 + (A)n Simple_repeat Simple_repeat 1 27 0 292 233 39 85 chr3 213606200 213606329 -13918249 - MIR3 SINE MIR -11 197 75 2925 82 70 10 chr3 213606654 213607032 -13917546 + MLT2A1 LTR ERVL 1 408 -36 225 0 0 0 chr3 213607032 213607057 -13917521 + (TA)n Simple_repeat Simple_repeat 1 25 0 2925 82 70 10 chr3 213607057 213607095 -13917483 + MLT2A1 LTR ERVL 408 442 -2 3030 198 36 16 chr3 213608546 213609237 -13915341 + MER39 LTR ERV1 3 707 0 426 272 49 49 chr3 213609487 213609671 -13914907 + MIR SINE MIR 20 203 -59 252 363 15 14 chr3 213610005 213610152 -13914426 + MIR SINE MIR 1 147 -65 1343 233 76 6 chr3 213610178 213610522 -13914056 + MLT1J2 LTR MaLR 40 407 -43 200 226 298 0 chr3 213610645 213610729 -13913849 - L2 LINE L2 -6 3307 3199 186 43 0 0 chr3 213614044 213614067 -13910511 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 23 33 0 0 chr3 213614204 213614234 -13910344 + AT_rich Low_complexity Low_complexity 1 30 0 199 259 35 17 chr3 213614709 213614767 -13909811 + MIR3 SINE MIR 111 169 -39 221 353 12 12 chr3 213615311 213615396 -13909182 - MIR SINE MIR -61 147 63 27 29 0 0 chr3 213615671 213615705 -13908873 + AT_rich Low_complexity Low_complexity 1 34 0 431 284 80 44 chr3 213615934 213616159 -13908419 - MIR SINE MIR -9 253 21 2378 92 3 0 chr3 213616205 213616499 -13908079 - AluSp SINE Alu -18 295 1 241 279 29 71 chr3 213617349 213617489 -13907089 - MIR3 SINE MIR 0 208 75 1997 118 0 4 chr3 213617876 213618167 -13906411 - AluSc SINE Alu 0 328 39 1937 160 76 17 chr3 213619458 213619802 -13904776 + THE1B LTR MaLR 1 364 0 11402 91 31 17 chr3 213619802 213620187 -13904391 + THE1B-int LTR MaLR 1 379 -1201 2419 71 0 0 chr3 213620187 213620496 -13904082 - L1PA8 LINE L1 -8 6164 5856 11402 91 31 17 chr3 213620496 213620528 -13904050 + THE1B-int LTR MaLR 379 409 -1171 1913 117 0 0 chr3 213620528 213620785 -13903793 - AluSq SINE Alu -56 257 1 11402 91 31 17 chr3 213620785 213621923 -13902655 + THE1B-int LTR MaLR 409 1580 0 2027 157 76 15 chr3 213621923 213622266 -13902312 + THE1B LTR MaLR 1 364 0 2943 183 57 19 chr3 213622358 213623037 -13901541 + MER39 LTR ERV1 3 707 0 325 286 51 51 chr3 213623300 213623478 -13901100 + MIR SINE MIR 20 197 -65 234 348 45 0 chr3 213623891 213623980 -13900598 + MIR SINE MIR 51 143 -119 1435 225 72 9 chr3 213624011 213624358 -13900220 + MLT1J2 LTR MaLR 39 407 -43 1062 173 243 9 chr3 213624463 213624712 -13899866 - AluSg1 SINE Alu 0 302 1 1995 112 4 0 chr3 213625091 213625359 -13899219 + AluSg SINE Alu 1 269 -41 207 0 0 0 chr3 213625369 213625392 -13899186 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1120 120 11 11 chr3 213626739 213626914 -13897664 + L1PA10 LINE L1 5994 6168 0 222 304 0 50 chr3 213627625 213627806 -13896772 + (ATGGTG)n Simple_repeat Simple_repeat 3 174 0 1483 154 0 114 chr3 213628333 213628665 -13895913 - AluSx SINE Alu -8 294 1 2396 99 3 0 chr3 213628986 213629289 -13895289 + AluSp SINE Alu 1 304 -9 522 103 0 0 chr3 213629764 213629851 -13894727 + (TC)n Simple_repeat Simple_repeat 2 88 0 192 40 0 0 chr3 213629851 213629876 -13894702 + (CA)n Simple_repeat Simple_repeat 1 25 0 411 252 84 37 chr3 213630650 213630862 -13893716 + MIR SINE MIR 1 213 -49 458 160 13 122 chr3 213631648 213631745 -13892833 + MIR SINE MIR 103 178 -84 2127 108 3 29 chr3 213631745 213632051 -13892527 + AluSq SINE Alu 1 298 -15 458 160 13 122 chr3 213632051 213632109 -13892469 + MIR SINE MIR 178 241 -21 479 151 11 0 chr3 213632141 213632234 -13892344 + CT-rich Low_complexity Low_complexity 6 99 0 198 333 12 12 chr3 213633610 213633694 -13890884 - MIR SINE MIR -61 147 64 284 115 54 23 chr3 213633828 213633958 -13890620 + (TA)n Simple_repeat Simple_repeat 2 135 0 735 179 0 0 chr3 213633965 213634082 -13890496 - FLAM_C SINE Alu -25 118 2 2274 127 3 0 chr3 213634308 213634616 -13889962 + AluSp SINE Alu 1 309 -4 209 364 36 21 chr3 213634621 213634761 -13889817 + MIR SINE MIR 28 169 -93 201 164 0 82 chr3 213634992 213635065 -13889513 + (CATATA)n Simple_repeat Simple_repeat 1 67 0 388 278 126 0 chr3 213635928 213636079 -13888499 + MIR SINE MIR 81 250 -12 2252 112 0 0 chr3 213636274 213636577 -13888001 + AluSx SINE Alu 1 303 -9 418 306 19 6 chr3 213636736 213636896 -13887682 + MIR SINE MIR 61 222 -40 2220 118 7 0 chr3 213637605 213637911 -13886667 + AluSg SINE Alu 1 308 -2 368 56 0 0 chr3 213638406 213638460 -13886118 - LTR6B LTR ERV1 -175 383 330 233 284 84 21 chr3 213638710 213638805 -13885773 - MIR SINE MIR -122 140 40 1728 116 0 0 chr3 213638862 213639087 -13885491 + AluSx SINE Alu 3 227 -85 2310 67 3 3 chr3 213639087 213639386 -13885192 - LTR6B LTR ERV1 -2 556 258 320 342 38 6 chr3 213639874 213640032 -13884546 - MIR SINE MIR -12 250 88 1178 120 0 0 chr3 213640034 213640192 -13884386 - AluSq SINE Alu -153 160 3 203 381 55 39 chr3 213640261 213640571 -13884007 - L2 LINE L2 -127 3145 2831 354 253 62 82 chr3 213640575 213640632 -13883946 - MIR SINE MIR -57 205 148 2393 91 7 0 chr3 213640632 213640939 -13883639 - AluSg SINE Alu -1 309 1 354 253 62 82 chr3 213640939 213641075 -13883503 - MIR SINE MIR -114 148 16 545 199 66 76 chr3 213641982 213642179 -13882399 - MLT1J LTR MaLR -246 189 5 1638 161 45 17 chr3 213642228 213642520 -13882058 + AluJo SINE Alu 1 300 -12 519 268 174 31 chr3 213642521 213642872 -13881706 + HAL1b LINE L1 462 862 -486 2426 75 7 16 chr3 213642897 213643204 -13881374 + AluY SINE Alu 1 304 -7 2076 95 20 24 chr3 213643217 213643511 -13881067 + AluSx SINE Alu 1 293 -19 417 286 46 51 chr3 213643742 213643827 -13880751 + MIR SINE MIR 37 121 -141 2471 81 10 0 chr3 213643827 213644135 -13880443 - AluSx SINE Alu -1 311 1 417 286 46 51 chr3 213644135 213644266 -13880312 + MIR SINE MIR 121 252 -10 271 236 135 0 chr3 213645096 213645185 -13879393 + L2 LINE L2 3212 3312 -1 266 307 40 7 chr3 213645245 213645337 -13879241 + MIR SINE MIR 93 196 -66 2137 148 0 0 chr3 213645337 213645647 -13878931 + AluSx SINE Alu 1 310 -2 266 307 40 7 chr3 213645647 213645704 -13878874 + MIR SINE MIR 196 250 -12 211 294 54 11 chr3 213645883 213645975 -13878603 + MIR3 SINE MIR 70 165 -43 575 229 14 21 chr3 213647473 213647613 -13876965 + L1MB7 LINE L1 6044 6182 -2 229 247 0 65 chr3 213648157 213648234 -13876344 + L2 LINE L2 3201 3272 0 239 234 47 0 chr3 213648403 213648467 -13876111 - MIR SINE MIR -80 182 116 2345 102 0 0 chr3 213648731 213649025 -13875553 + AluSq SINE Alu 1 294 -19 214 244 0 77 chr3 213649353 213649431 -13875147 - L2 LINE L2 0 3272 3201 2091 123 0 10 chr3 213649517 213649819 -13874759 + AluSx SINE Alu 1 299 -13 355 223 259 0 chr3 213649836 213649948 -13874630 + MIR SINE MIR 3 143 -119 738 267 26 51 chr3 213650346 213650698 -13873880 - HAL1 LINE L1 -319 2188 1846 2724 270 87 29 chr3 213650705 213651201 -13873377 - HAL1 LINE L1 -751 1756 1290 1872 159 3 29 chr3 213651201 213651516 -13873062 - AluJb SINE Alu -4 308 2 2724 270 87 29 chr3 213651516 213652174 -13872404 - HAL1 LINE L1 -1217 1290 536 501 174 128 9 chr3 213652336 213652445 -13872133 - MER46C DNA MER2_type -209 129 8 294 261 14 0 chr3 213652625 213652694 -13871884 + MIR SINE MIR 51 120 -142 6821 75 13 4 chr3 213652694 213652877 -13871701 + L1PA10 LINE L1 4315 4495 -1673 2343 101 0 7 chr3 213652877 213653183 -13871395 + AluSc SINE Alu 1 304 -5 6821 75 13 4 chr3 213653183 213654859 -13869719 + L1PA10 LINE L1 4495 6168 0 214 295 26 0 chr3 213654865 213654943 -13869635 + MIR SINE MIR 106 185 -77 519 313 114 47 chr3 213654950 213655398 -13869180 - L2 LINE L2 -4 3309 2832 1465 84 11 0 chr3 213655601 213655791 -13868787 + AluSg/x SINE Alu 112 303 -7 2233 245 56 27 chr3 213655799 213656678 -13867900 + L1M3a LINE L1 901 1793 -4242 711 118 0 0 chr3 213656678 213656780 -13867798 - AluSg/x SINE Alu -1 311 210 1431 247 67 26 chr3 213656780 213657395 -13867183 + L1M1 LINE L1 2986 3625 -3940 463 211 147 46 chr3 213657388 213657404 -13867174 - L1ME4a LINE L1 -14 6107 6094 * 2166 126 10 7 chr3 213657404 213657714 -13866864 + AluSx SINE Alu 1 311 -1 463 211 147 46 chr3 213657714 213657915 -13866663 - L1ME4a LINE L1 -27 6094 5868 2049 110 7 3 chr3 213658536 213658818 -13865760 + AluSx SINE Alu 1 283 -29 219 69 0 0 chr3 213658818 213658847 -13865731 + (AAATG)n Simple_repeat Simple_repeat 2 30 0 373 237 34 59 chr3 213658857 213658975 -13865603 - L1ME4a LINE L1 -437 5684 5570 602 264 34 11 chr3 213659071 213659249 -13865329 + MIR SINE MIR 81 262 0 373 271 128 16 chr3 213659437 213659625 -13864953 - L1MC5 LINE L1 -28 7933 7725 2073 112 20 16 chr3 213659814 213660118 -13864460 - AluJb SINE Alu -7 305 1 188 365 10 10 chr3 213660181 213660277 -13864301 + MIR3 SINE MIR 11 106 -102 324 289 81 33 chr3 213661117 213661231 -13863347 - L1MC4a LINE L1 -111 6010 5903 1419 121 36 5 chr3 213661231 213661454 -13863124 - MER30 DNA MER1_type 0 230 1 324 289 81 33 chr3 213661454 213661622 -13862956 - L1MC4a LINE L1 -218 5903 5729 237 301 133 22 chr3 213661999 213662225 -13862353 + L2 LINE L2 2839 3089 -183 557 268 18 0 chr3 213663136 213663300 -13861278 - MIR SINE MIR -16 246 80 259 313 35 0 chr3 213663356 213663470 -13861108 - MER5A DNA MER1_type 0 178 63 217 288 62 41 chr3 213663383 213663529 -13861049 + MER5A DNA MER1_type 40 188 -1 * 1921 93 26 60 chr3 213663698 213664000 -13860578 + AluSc SINE Alu 5 296 -13 202 273 124 50 chr3 213664000 213664121 -13860457 + L3 LINE CR1 1333 1462 -115 1121 206 113 29 chr3 213664307 213664651 -13859927 - MER93b LTR ERV1 0 373 1 317 250 82 87 chr3 213665161 213665345 -13859233 - MIR SINE MIR -44 218 36 599 168 119 0 chr3 213665893 213666095 -13858483 - AluSq SINE Alu -9 304 79 3501 72 4 11 chr3 213667195 213667651 -13856927 - MLT2A2 LTR ERVL 0 453 1 281 246 14 14 chr3 213668265 213668334 -13856244 - MLT1I LTR MaLR -249 160 92 2316 75 4 0 chr3 213668872 213669186 -13855392 + AluY SINE Alu 1 315 0 6187 168 28 11 chr3 213669186 213671277 -13853301 + L1MA7 LINE L1 4168 6289 -2 1220 77 0 0 chr3 213671315 213671470 -13853108 + AluSc SINE Alu 133 287 -22 257 196 20 0 chr3 213671784 213671835 -13852743 - L1ME LINE L1 -271 5850 5799 304 309 56 52 chr3 213671884 213672117 -13852461 - L1ME LINE L1 -336 5785 5552 346 338 74 23 chr3 213672273 213672572 -13852006 + L2 LINE L2 2411 2724 -590 2198 104 17 0 chr3 213672592 213672879 -13851699 + AluSx SINE Alu 2 293 -19 813 200 13 0 chr3 213672954 213673104 -13851474 - AluJb SINE Alu -24 288 137 233 211 53 0 chr3 213673762 213673819 -13850759 - MIR SINE MIR -85 177 118 333 175 0 0 chr3 213673836 213673893 -13850685 + U6 snRNA snRNA 1 57 -50 277 297 62 35 chr3 213674222 213674367 -13850211 + MIR SINE MIR 59 207 -55 459 35 0 0 chr3 213675091 213675148 -13849430 + (TG)n Simple_repeat Simple_repeat 1 57 0 192 182 0 0 chr3 213675739 213675783 -13848795 + (TTA)n Simple_repeat Simple_repeat 3 46 0 378 298 0 0 chr3 213675860 213675954 -13848624 - MIR SINE MIR -121 141 48 375 41 0 0 chr3 213676060 213676109 -13848469 + (TAAA)n Simple_repeat Simple_repeat 4 52 0 181 296 0 0 chr3 213676777 213676821 -13847757 + L2 LINE L2 3151 3194 -78 2317 87 10 3 chr3 213676852 213677150 -13847428 - AluSx SINE Alu -12 300 1 1181 104 0 0 chr3 213677150 213677333 -13847245 - L1P LINE L1 -1649 4497 4315 294 261 14 0 chr3 213677333 213677402 -13847176 - MIR SINE MIR -142 120 51 491 184 128 9 chr3 213677582 213677691 -13846887 + MER46C DNA MER2_type 8 129 -209 1919 278 58 39 chr3 213677853 213678512 -13846066 + HAL1 LINE L1 536 1216 -1291 1872 159 3 29 chr3 213678512 213678827 -13845751 + AluJb SINE Alu 2 308 -4 1919 278 58 39 chr3 213678827 213679006 -13845572 + HAL1 LINE L1 1216 1390 -1117 2338 115 62 30 chr3 213679154 213679554 -13845024 + MER21A LTR ERV1 519 931 0 1818 184 40 75 chr3 213679589 213680103 -13844475 - MER4D LTR ERV1 -225 666 62 1574 154 32 14 chr3 213680095 213680375 -13844203 - MER49 LTR ERV1 -638 285 1 * 576 276 89 31 chr3 213680375 213680668 -13843910 + L2 LINE L2 3003 3312 -1 3589 30 5 5 chr3 213680675 213681102 -13843476 + L1PA4 LINE L1 5729 6155 0 239 114 23 0 chr3 213681247 213681291 -13843287 + (TA)n Simple_repeat Simple_repeat 2 46 0 1072 249 109 26 chr3 213681886 213682316 -13842262 + L2 LINE L2 1714 2179 -1135 271 259 40 130 chr3 213682573 213682762 -13841816 - MER5A DNA MER1_type 0 189 4 696 226 112 49 chr3 213682774 213682985 -13841593 + MER5C DNA MER1_type 1 240 -84 2060 84 3 21 chr3 213682985 213683326 -13841252 - AluY SINE Alu 0 336 1 696 226 112 49 chr3 213683326 213683417 -13841161 + MER5C DNA MER1_type 240 324 0 220 309 79 43 chr3 213683458 213683597 -13840981 + MIR SINE MIR 48 191 -71 251 170 198 47 chr3 213685200 213685306 -13839272 - MIR SINE MIR -14 248 127 2203 95 0 3 chr3 213685726 213686052 -13838526 - AluSx SINE Alu 0 326 2 1248 240 63 96 chr3 213686064 213686743 -13837835 - HAL1 LINE L1 -5 2502 1846 192 338 0 0 chr3 213687044 213687121 -13837457 + MIR SINE MIR 165 241 -21 2342 104 0 0 chr3 213687230 213687529 -13837049 - AluSx SINE Alu -13 299 1 297 256 92 55 chr3 213687547 213687711 -13836867 + L3 LINE CR1 1341 1510 -67 294 197 28 28 chr3 213688121 213688192 -13836386 + MIR SINE MIR 92 162 -100 2167 122 3 0 chr3 213688237 213688531 -13836047 - AluSx SINE Alu -17 295 1 353 311 14 77 chr3 213688534 213688743 -13835835 - MIR SINE MIR -62 200 5 181 161 0 0 chr3 213688745 213688776 -13835802 + MIR SINE MIR 217 247 -15 233 69 0 0 chr3 213689933 213689962 -13834616 + (GA)n Simple_repeat Simple_repeat 2 30 0 433 121 24 12 chr3 213689962 213690045 -13834533 + GA-rich Low_complexity Low_complexity 2 85 0 311 297 0 0 chr3 213691004 213691068 -13833510 + Tigger2 DNA MER2_type 2643 2706 -12 26 30 0 0 chr3 213691111 213691144 -13833434 + AT_rich Low_complexity Low_complexity 1 33 0 812 100 73 0 chr3 213691147 213691257 -13833321 - AluJb SINE Alu -194 118 1 290 168 11 137 chr3 213691257 213691352 -13833226 + Charlie5 DNA MER1_type 2542 2624 0 1730 171 27 3 chr3 213691448 213691741 -13832837 - AluJb SINE Alu -11 301 2 223 408 17 8 chr3 213691830 213691950 -13832628 + MIR SINE MIR 30 150 -58 881 223 58 59 chr3 213692223 213692613 -13831965 - MLT2D LTR ERVL -130 390 2 723 211 47 11 chr3 213692614 213692804 -13831774 - L1M4 LINE L1 -1572 4574 4378 227 284 59 29 chr3 213693044 213693086 -13831492 - MIR SINE MIR -111 151 112 2408 159 78 0 chr3 213693086 213693483 -13831095 + MSTA LTR MaLR 1 428 0 227 284 59 29 chr3 213693483 213693542 -13831036 - MIR SINE MIR -150 112 47 583 302 44 6 chr3 213694038 213694220 -13830358 + MIR3 SINE MIR 12 200 -8 2362 99 0 0 chr3 213694357 213694659 -13829919 + AluY SINE Alu 1 302 -9 695 285 98 0 chr3 213694663 213694877 -13829701 + MIR SINE MIR 28 262 0 238 35 0 0 chr3 213695050 213695079 -13829499 + Alu SINE Alu 230 258 -44 2006 138 3 3 chr3 213695311 213695628 -13828950 + AluSx SINE Alu 1 317 0 3424 163 29 7 chr3 213695828 213696448 -13828130 + L1P LINE L1 15 648 -5498 963 236 8 40 chr3 213696595 213696845 -13827733 - MER4D LTR ERV1 0 903 662 2265 95 0 41 chr3 213696877 213697193 -13827385 - AluSx SINE Alu -9 303 1 1263 206 73 7 chr3 213697333 213697619 -13826959 + AluJo SINE Alu 1 305 -7 323 222 141 20 chr3 213698443 213698542 -13826036 + MIR SINE MIR 17 127 -81 549 271 65 49 chr3 213699090 213699337 -13825241 - MIR SINE MIR -6 256 6 235 346 13 0 chr3 213699456 213699534 -13825044 - MIR SINE MIR -154 108 30 1562 279 118 28 chr3 213699599 213700422 -13824156 + L2 LINE L2 2221 3125 -188 180 77 0 0 chr3 213700422 213700448 -13824130 + (TTCC)n Simple_repeat Simple_repeat 1 26 0 181 232 0 37 chr3 213700549 213700631 -13823947 + CT-rich Low_complexity Low_complexity 4 82 0 345 317 18 18 chr3 213700640 213700807 -13823771 - AluSc SINE Alu -28 271 105 373 312 111 5 chr3 213701759 213701948 -13822630 - MIR SINE MIR -48 214 6 560 176 14 27 chr3 213702782 213702930 -13821648 + GA-rich Low_complexity Low_complexity 3 148 0 197 216 59 0 chr3 213703031 213703082 -13821496 - MIR SINE MIR -155 107 54 194 327 18 0 chr3 213703164 213703219 -13821359 + L2 LINE L2 3246 3301 -12 611 285 77 14 chr3 213704227 213704434 -13820144 - MIR SINE MIR -21 241 22 1838 159 3 7 chr3 213704434 213704742 -13819836 - AluJb SINE Alu -3 309 3 422 300 9 0 chr3 213705589 213705699 -13818879 + MIR3 SINE MIR 70 181 -27 2773 164 23 11 chr3 213705812 213706342 -13818236 - LTR27 LTR ERV1 -141 495 7 281 297 99 0 chr3 213707993 213708104 -13816474 + L2 LINE L2 3133 3254 -18 288 200 0 0 chr3 213708225 213708300 -13816278 + T-rich Low_complexity Low_complexity 1 75 0 8761 59 5 10 chr3 213708559 213709728 -13814850 - L1P LINE L1 -2542 3604 2442 2370 86 0 13 chr3 213709874 213710188 -13814390 - AluSg SINE Alu 0 310 1 409 283 118 21 chr3 213710206 213710393 -13814185 - MIR SINE MIR -11 251 47 724 225 30 0 chr3 213710396 213710565 -13814013 - MIR SINE MIR -7 255 82 275 205 143 27 chr3 213711638 213711750 -13812828 - L1ME4a LINE L1 -6 6115 5991 22 35 0 0 chr3 213711797 213711826 -13812752 + AT_rich Low_complexity Low_complexity 1 29 0 265 205 73 12 chr3 213712267 213712352 -13812226 - MLT1G1 LTR MaLR 0 588 474 * 809 233 83 38 chr3 213712330 213712643 -13811935 - MLT1B LTR MaLR -4 386 60 191 246 24 145 chr3 213713136 213713218 -13811360 - MIR SINE MIR -63 145 140 2312 54 3 87 chr3 213713218 213713552 -13811026 + AluY SINE Alu 1 306 -5 191 246 24 145 chr3 213713552 213713652 -13810926 - MIR SINE MIR -68 140 30 303 216 39 59 chr3 213713720 213713822 -13810756 - L1ME LINE L1 -454 5667 5568 1561 225 59 8 chr3 213713930 213714303 -13810275 + L1ME1 LINE L1 5505 5896 -270 863 150 8 8 chr3 213714319 213714452 -13810126 + FLAM_C SINE Alu 1 133 0 1375 155 0 5 chr3 213714483 213714702 -13809876 + AluJo SINE Alu 85 302 -10 1391 235 119 21 chr3 213714715 213715232 -13809346 + MLT2F LTR ERVL 2 663 0 597 203 79 34 chr3 213715237 213715485 -13809093 + L1ME1 LINE L1 5897 6311 -23 1787 180 0 13 chr3 213715866 213716177 -13808401 + AluJb SINE Alu 2 308 -4 21 0 0 0 chr3 213716352 213716373 -13808205 + AT_rich Low_complexity Low_complexity 1 21 0 1546 167 68 0 chr3 213716711 213716992 -13807586 - AluJb SINE Alu -12 300 1 232 279 81 27 chr3 213718461 213718572 -13806006 + MIR SINE MIR 16 132 -76 * 2421 260 156 16 chr3 213718544 213719652 -13804926 + L2 LINE L2 2049 3313 0 2486 247 71 21 chr3 213720129 213720970 -13803608 - L1M2 LINE L1 -4286 2065 1184 2471 85 3 0 chr3 213720970 213721275 -13803303 - AluSx SINE Alu -4 308 3 2486 247 71 21 chr3 213721275 213721499 -13803079 - L1M2 LINE L1 -5167 1184 973 1551 219 13 5 chr3 213721507 213721878 -13802700 + L1PBa LINE L1 1 994 -5210 408 299 67 53 chr3 213722172 213722456 -13802122 - L1 LINE L1 -2129 4017 3730 2094 152 3 37 chr3 213722547 213722896 -13801682 - MER1B DNA MER1_type 0 337 1 1854 135 44 0 chr3 213722933 213723229 -13801349 - AluSx SINE Alu -3 309 1 975 246 54 25 chr3 213723267 213723544 -13801034 + AluJb SINE Alu 2 286 -16 378 281 7 68 chr3 213724258 213724404 -13800174 - MIR3 SINE MIR -64 144 8 446 287 176 23 chr3 213724920 213725136 -13799442 - MIR SINE MIR -10 252 4 376 291 10 0 chr3 213725141 213725244 -13799334 + MIR3 SINE MIR 93 196 -12 191 262 0 0 chr3 213725873 213725915 -13798663 + MIR3 SINE MIR 164 205 -3 899 266 135 87 chr3 213726296 213727608 -13796970 + L1MC5 LINE L1 5729 7130 -831 1618 180 3 10 chr3 213727608 213727897 -13796681 + AluSx SINE Alu 1 287 -25 899 266 135 87 chr3 213727897 213727969 -13796609 + L1MC5 LINE L1 7130 7197 -764 1412 186 35 67 chr3 213728142 213728577 -13796001 - L1MCa LINE L1 -1587 4839 1498 1339 66 0 0 chr3 213728578 213728744 -13795834 - AluSc SINE Alu -11 298 133 13954 187 38 39 chr3 213728782 213730874 -13793704 - L1MA7 LINE L1 -2 7708 5616 273 29 0 0 chr3 213730874 213730908 -13793670 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 2292 75 0 0 chr3 213730910 213731189 -13793389 - AluY SINE Alu -32 279 1 13954 187 38 39 chr3 213731189 213733189 -13791389 - L1MA7 LINE L1 -2095 5615 3609 1998 164 0 3 chr3 213733189 213733493 -13791085 - AluJb SINE Alu -9 303 1 13954 187 38 39 chr3 213733493 213734117 -13790461 - L1MA7 LINE L1 -4101 3609 2986 600 153 0 0 chr3 213734117 213734202 -13790376 + AluSg/x SINE Alu 210 294 -18 569 252 53 36 chr3 213734205 213734428 -13790150 - L1M2 LINE L1 -4242 2185 1700 4377 148 30 9 chr3 213734736 213735923 -13788655 + L1PBb LINE L1 332 1546 -4658 26 30 0 0 chr3 213736089 213736122 -13788456 + AT_rich Low_complexity Low_complexity 1 33 0 2236 82 3 28 chr3 213736130 213736447 -13788131 + AluY SINE Alu 1 309 -2 2100 135 3 0 chr3 213736521 213736824 -13787754 + AluSx SINE Alu 1 304 -8 270 241 54 54 chr3 213736964 213737076 -13787502 - L1MEc LINE L1 -3108 3242 3131 14078 196 44 12 chr3 213737115 213743522 -13781056 + L1PB2 LINE L1 6 6863 -4 1491 317 57 51 chr3 213743699 213744701 -13779877 - L1M4 LINE L1 -5273 1008 1 1426 251 182 22 chr3 213744705 213744877 -13779701 - L1MEc LINE L1 -4921 1610 1467 1411 205 16 46 chr3 213744877 213745180 -13779398 - AluJb SINE Alu -14 298 5 1426 251 182 22 chr3 213745180 213745689 -13778889 - L1MEc LINE L1 -5064 1467 820 507 250 59 20 chr3 213745696 213745848 -13778730 - L1MEc LINE L1 -6202 329 172 399 128 35 35 chr3 213745975 213746061 -13778517 - L1PB2 LINE L1 -87 6064 5979 2517 66 3 0 chr3 213746432 213746735 -13777843 - AluY SINE Alu -7 304 1 570 222 21 28 chr3 213747853 213748090 -13776488 + ALR/Alpha Satellite centromeric 1 235 -69 249 162 66 176 chr3 213748423 213748559 -13776019 - MIR SINE MIR -23 239 119 724 286 37 34 chr3 213748720 213748932 -13775646 - LTR16A1 LTR ERVL 0 457 242 3499 72 16 0 chr3 213748932 213749375 -13775203 + MLT2A2 LTR ERVL 2 451 -2 724 286 37 34 chr3 213749375 213749456 -13775122 - LTR16A1 LTR ERVL -215 242 163 549 328 35 20 chr3 213749814 213750382 -13774196 - HERV16 LTR ERVL -316 5338 4782 1084 346 51 16 chr3 213750546 213751183 -13773395 - HERV16 LTR ERVL -1241 4523 3829 1299 157 5 0 chr3 213751183 213751387 -13773191 + MER2 DNA MER2_type 1 205 -140 269 239 42 28 chr3 213751419 213751490 -13773088 + MER2 DNA MER2_type 269 340 -5 1124 309 60 35 chr3 213751495 213752069 -13772509 - HERV16 LTR ERVL -1439 3827 3134 291 348 44 7 chr3 213752119 213752254 -13772324 - HERV16 LTR ERVL -4739 257 118 426 254 92 14 chr3 213752443 213752585 -13771993 - LTR16A1 LTR ERVL -17 440 288 438 190 0 0 chr3 213753669 213753747 -13770831 + Tigger5 DNA MER2_type 1 78 -2245 362 183 0 0 chr3 213753747 213753807 -13770771 - Tigger5 DNA MER2_type -3 2320 2261 1113 225 45 88 chr3 213753921 213754305 -13770273 - HAL1 LINE L1 -62 2445 2091 2345 101 3 0 chr3 213754305 213754603 -13769975 - AluSp SINE Alu -14 299 1 1113 225 45 88 chr3 213754603 213754774 -13769804 - HAL1 LINE L1 -416 2091 1914 420 191 0 0 chr3 213754776 213754860 -13769718 + CT-rich Low_complexity Low_complexity 4 87 0 1990 155 0 0 chr3 213754873 213755163 -13769415 - AluSx SINE Alu -22 290 1 508 229 127 57 chr3 213755163 213755407 -13769171 - HAL1 LINE L1 -579 1928 1668 242 244 26 0 chr3 213755924 213756002 -13768576 + L1MC4 LINE L1 6622 6701 -1341 1567 127 0 0 chr3 213756054 213756267 -13768311 - AluSx SINE Alu -99 213 1 1477 244 77 26 chr3 213756418 213756844 -13767734 - MLT1C LTR MaLR 0 467 20 229 258 121 0 chr3 213757077 213757143 -13767435 + AluJ/FRAM SINE Alu 228 301 -1 1730 199 63 68 chr3 213757172 213757953 -13766625 - L1ME LINE L1 -555 5611 4839 511 147 10 10 chr3 213758131 213758233 -13766345 + MER2 DNA MER2_type 105 206 -139 232 299 15 0 chr3 213758271 213758338 -13766240 + MER2 DNA MER2_type 278 345 0 532 376 28 0 chr3 213758495 213758676 -13765902 - MER91A DNA MER1_type -10 186 1 377 234 80 15 chr3 213758762 213758899 -13765679 + L2 LINE L2 3160 3305 -8 444 333 65 50 chr3 213759190 213759595 -13764983 + L2 LINE L2 2618 3026 -287 189 345 60 0 chr3 213759759 213759843 -13764735 + L2 LINE L2 3183 3271 -1 495 279 38 80 chr3 213761521 213761783 -13762795 - MLT1J LTR MaLR -260 251 1 353 223 9 12 chr3 213764421 213764525 -13760053 + LOR1a LTR ERV1 170 308 -189 * 788 213 232 28 chr3 213764522 213764776 -13759802 + LOR1a LTR ERV1 192 497 0 2472 69 0 7 chr3 213765084 213765387 -13759191 - AluSq SINE Alu -12 301 1 23 33 0 0 chr3 213765532 213765562 -13759016 + AT_rich Low_complexity Low_complexity 1 30 0 473 126 46 11 chr3 213766095 213766182 -13758396 + MER5A DNA MER1_type 100 189 0 424 113 141 0 chr3 213766248 213766319 -13758259 - MER5A DNA MER1_type -107 82 2 334 271 57 42 chr3 213766327 213766511 -13758067 + L1ME3A LINE L1 5944 6138 -24 882 212 0 6 chr3 213767433 213767598 -13756980 - FRAM SINE Alu -12 164 1 2391 148 62 12 chr3 213769251 213769655 -13754923 + MSTA LTR MaLR 5 428 0 442 152 0 0 chr3 213770122 213770188 -13754390 + AluS SINE Alu 2 67 -246 1774 100 3 86 chr3 213770188 213770479 -13754099 + AluSx SINE Alu 31 297 -15 612 236 45 89 chr3 213770496 213770742 -13753836 + MIR SINE MIR 28 262 0 352 222 151 24 chr3 213771588 213771714 -13752864 + L1MCc LINE L1 13 154 -6269 485 214 0 0 chr3 213771716 213771800 -13752778 - MER81 DNA DNA -30 84 1 860 279 92 16 chr3 213771801 213772106 -13752472 + L1MCc LINE L1 134 461 -5962 1758 109 127 26 chr3 213772125 213772465 -13752113 + THE1C LTR MaLR 2 375 0 1921 237 106 30 chr3 213772516 213773164 -13751414 + L1MCc LINE L1 872 1574 -4848 1180 174 31 0 chr3 213773190 213773386 -13751192 + MER20 DNA MER1_type 1 202 -17 557 271 53 72 chr3 213773387 213773708 -13750870 + L1M4 LINE L1 3232 3546 -2600 2511 107 14 19 chr3 213774197 213774563 -13750015 + THE1B LTR MaLR 1 364 0 1188 193 133 0 chr3 213774652 213774901 -13749677 - MSTB LTR MaLR 0 426 145 912 178 75 68 chr3 213775649 213775849 -13748729 - MER33 DNA MER1_type -2262 323 126 1547 169 57 33 chr3 213775849 213776150 -13748428 + AluJo SINE Alu 1 308 -4 2095 116 3 13 chr3 213776152 213776454 -13748124 + AluSx SINE Alu 2 300 -12 2107 98 19 48 chr3 213776456 213776771 -13747807 + AluSx SINE Alu 1 306 -6 912 178 75 68 chr3 213776771 213776885 -13747693 - MER33 DNA MER1_type -2459 126 1 549 170 58 134 chr3 213777123 213777294 -13747284 - MER45A DNA AcHobo -20 158 1 2195 88 7 0 chr3 213777703 213778013 -13746565 + AluSx SINE Alu 1 312 0 28 48 0 0 chr3 213778462 213778504 -13746074 + GC_rich Low_complexity Low_complexity 1 42 0 1820 119 56 0 chr3 213779175 213779444 -13745134 + AluSx SINE Alu 29 312 0 26 0 0 0 chr3 213779833 213779859 -13744719 + AT_rich Low_complexity Low_complexity 1 26 0 1485 139 0 0 chr3 213779989 213780197 -13744381 + AluSc SINE Alu 1 208 -101 564 243 47 18 chr3 213780519 213780688 -13743890 - MIR3 SINE MIR -25 183 10 224 228 22 87 chr3 213781207 213781299 -13743279 + MIR SINE MIR 156 241 -21 2057 129 4 0 chr3 213781477 213781755 -13742823 + AluSx SINE Alu 1 279 -33 225 0 0 0 chr3 213781755 213781780 -13742798 + (CAA)n Simple_repeat Simple_repeat 2 26 0 473 194 30 45 chr3 213782806 213782940 -13741638 - L3 LINE CR1 -79 1498 1367 663 260 141 9 chr3 213783027 213783417 -13741161 + L2 LINE L2 2657 3096 -217 2275 97 13 3 chr3 213784206 213784514 -13740064 - AluSx SINE Alu -1 311 1 1350 103 31 0 chr3 213784515 213784709 -13739869 - MSTB1 LTR MaLR -232 200 1 1723 126 72 23 chr3 213784709 213785057 -13739521 + L1MA8 LINE L1 5925 6289 -2 276 263 88 26 chr3 213785070 213785184 -13739394 + MIR3 SINE MIR 15 135 -73 225 65 0 0 chr3 213785437 213785468 -13739110 + (CA)n Simple_repeat Simple_repeat 2 32 0 495 154 11 0 chr3 213785652 213785743 -13738835 - MLT2B2 LTR ERVL 0 515 424 235 242 30 0 chr3 213787304 213787370 -13737208 - MIR SINE MIR -106 102 35 567 285 50 16 chr3 213787696 213787920 -13736658 - MIR SINE MIR -12 250 19 2421 96 0 6 chr3 213788504 213788816 -13735762 - AluSx SINE Alu -2 310 1 376 232 0 24 chr3 213789303 213789445 -13735133 + MIR SINE MIR 20 154 -62 278 349 38 50 chr3 213790154 213790392 -13734186 + L2 LINE L2 2999 3233 -39 351 320 23 40 chr3 213790532 213790707 -13733871 - MIR3 SINE MIR -18 190 19 361 215 44 74 chr3 213791430 213791565 -13733013 + L2 LINE L2 3160 3290 -23 419 278 0 0 chr3 213791644 213791741 -13732837 + MIR3 SINE MIR 109 205 -3 360 326 48 4 chr3 213791840 213792039 -13732539 + MIR SINE MIR 28 237 -25 317 286 92 8 chr3 213792230 213792349 -13732229 - MIR SINE MIR -83 179 51 2907 3 0 0 chr3 213792360 213792665 -13731913 - AluYa5 SINE Alu -6 305 1 291 316 18 18 chr3 213793031 213793145 -13731433 + MIR3 SINE MIR 81 194 -14 402 288 78 16 chr3 213793803 213793994 -13730584 + MIR3 SINE MIR 3 205 -3 367 345 53 10 chr3 213794624 213794830 -13729748 + L2 LINE L2 2544 2758 -556 279 212 115 26 chr3 213795430 213795543 -13729035 + Charlie8 DNA MER1_type 76 198 -2219 234 259 0 0 chr3 213795778 213795836 -13728742 + Charlie8 DNA MER1_type 1366 1423 -994 240 275 13 67 chr3 213796385 213796534 -13728044 + MIR SINE MIR 51 191 -71 441 324 88 6 chr3 213796581 213796751 -13727827 + MIR SINE MIR 13 196 -66 1466 261 186 6 chr3 213797399 213798220 -13726358 + L2 LINE L2 2342 3313 0 383 289 43 59 chr3 213798637 213798824 -13725754 - MIR3 SINE MIR -17 191 8 385 310 183 0 chr3 213799340 213799537 -13725041 - MIR SINE MIR -10 252 20 347 291 10 0 chr3 213799561 213799664 -13724914 + MIR3 SINE MIR 93 196 -12 180 262 0 0 chr3 213800293 213800335 -13724243 + MIR3 SINE MIR 164 205 -3 445 231 66 33 chr3 213801011 213801231 -13723347 + L1M4 LINE L1 489 938 -5708 371 171 106 81 chr3 213801234 213801357 -13723221 + L1M4 LINE L1 1372 1497 -5068 * 1305 161 54 166 chr3 213801336 213801459 -13723119 + L1MB4 LINE L1 6145 6280 -398 286 139 0 0 chr3 213801459 213801502 -13723076 + MSTC LTR MaLR 384 426 -2 4782 235 98 42 chr3 213801504 213803068 -13721510 + MSTC-int LTR MaLR 1 1651 0 2642 132 31 19 chr3 213803068 213803491 -13721087 + MSTC LTR MaLR 1 428 0 1305 161 54 166 chr3 213803491 213803925 -13720653 + L1MB4 LINE L1 6279 6651 -27 785 300 91 40 chr3 213803932 213804526 -13720052 - L2 LINE L2 -940 2374 1751 2281 119 3 0 chr3 213804536 213804846 -13719732 + AluSq SINE Alu 1 311 -2 292 183 83 58 chr3 213804988 213805108 -13719470 - LTR67 LTR ERVL 0 557 435 1435 159 0 9 chr3 213805141 213805374 -13719204 + AluSq SINE Alu 81 311 -2 285 284 21 84 chr3 213805740 213805930 -13718648 + MER5B DNA MER1_type 1 178 0 224 284 59 10 chr3 213805930 213806032 -13718546 - MIR3 SINE MIR -48 160 54 242 299 12 11 chr3 213806697 213806799 -13717779 + MER5B DNA MER1_type 19 121 -68 1667 157 84 34 chr3 213807513 213807869 -13716709 + THE1C LTR MaLR 1 374 -1 444 214 0 132 chr3 213808530 213808615 -13715963 - MER5B DNA MER1_type -3 175 119 1843 168 0 10 chr3 213808615 213808907 -13715671 - AluJo SINE Alu -12 300 12 444 214 0 132 chr3 213808907 213808980 -13715598 - MER5B DNA MER1_type -59 119 38 820 301 29 41 chr3 213809476 213809806 -13714772 - HAL1 LINE L1 -869 1638 1314 2225 103 0 23 chr3 213809806 213810108 -13714470 + AluSg1 SINE Alu 1 295 -14 820 301 29 41 chr3 213810108 213810268 -13714310 - HAL1 LINE L1 -1193 1314 1154 1200 94 0 0 chr3 213810269 213810455 -13714123 - AluSg/x SINE Alu 0 322 137 1311 292 89 39 chr3 213812492 213813006 -13711572 + MLT1K LTR MaLR 47 586 -2 457 315 42 18 chr3 213813171 213813336 -13711242 - MIR3 SINE MIR -30 178 10 224 269 13 13 chr3 213814398 213814476 -13710102 + GA-rich Low_complexity Low_complexity 1 78 0 282 373 91 7 chr3 213814580 213815022 -13709556 + L2 LINE L2 1937 2415 -899 353 232 0 36 chr3 213815645 213815757 -13708821 + MER5A DNA MER1_type 81 188 -1 290 390 6 12 chr3 213817219 213817391 -13707187 + MIR3 SINE MIR 31 201 -7 377 254 201 0 chr3 213818391 213818525 -13706053 - MIR3 SINE MIR -11 197 37 2046 104 10 34 chr3 213819223 213819521 -13705057 + AluSp SINE Alu 1 291 -22 268 320 30 10 chr3 213819579 213819679 -13704899 - MIR SINE MIR -87 121 20 1060 93 74 19 chr3 213820216 213820378 -13704200 + THE1B LTR MaLR 194 364 0 1996 148 0 13 chr3 213820792 213821090 -13703488 - AluSx SINE Alu -12 300 7 194 325 55 49 chr3 213821970 213822133 -13702445 + L2 LINE L2 2643 2806 -508 2213 122 0 0 chr3 213822390 213822693 -13701885 + AluSx SINE Alu 1 303 -9 1225 140 11 0 chr3 213824035 213824221 -13700357 - AluSx SINE Alu -124 188 1 2137 164 57 29 chr3 213824522 213824771 -13699807 - MSTB1 LTR MaLR 0 432 165 2566 113 11 5 chr3 213824771 213825144 -13699434 - THE1C LTR MaLR 0 375 1 2137 164 57 29 chr3 213825144 213825314 -13699264 - MSTB1 LTR MaLR -267 165 1 4610 173 78 17 chr3 213825321 213825390 -13699188 - L1MD1 LINE L1 -1 6241 6178 1675 197 13 0 chr3 213825390 213825690 -13698888 + AluJo SINE Alu 1 304 -8 4610 173 78 17 chr3 213825690 213826828 -13697750 - L1MD1 LINE L1 -64 6178 4966 1702 112 31 143 chr3 213826845 213827265 -13697313 - THE1C LTR MaLR -2 373 1 9949 116 11 45 chr3 213827265 213828897 -13695681 - THE1C-int LTR MaLR 0 1580 4 1651 138 43 103 chr3 213828900 213829298 -13695280 - THE1C LTR MaLR 0 375 2 379 299 67 53 chr3 213829696 213829980 -13694598 - L1MD1 LINE L1 -2129 4017 3730 1956 152 3 37 chr3 213830071 213830420 -13694158 - MER1B DNA MER1_type 0 337 1 1866 135 44 0 chr3 213830457 213830753 -13693825 - AluSx SINE Alu -3 309 1 1758 153 35 10 chr3 213830790 213831078 -13693500 + AluJb SINE Alu 1 295 -17 24 67 0 0 chr3 213831185 213831230 -13693348 + AT_rich Low_complexity Low_complexity 1 45 0 26 30 0 0 chr3 213831329 213831362 -13693216 + AT_rich Low_complexity Low_complexity 1 33 0 2247 82 3 29 chr3 213831370 213831686 -13692892 + AluY SINE Alu 1 308 -3 2112 135 3 0 chr3 213831760 213832063 -13692515 + AluSx SINE Alu 1 304 -8 260 241 54 54 chr3 213832203 213832315 -13692263 - L1MD1 LINE L1 -3108 3038 2927 15430 196 33 8 chr3 213832354 213838848 -13685730 + L1PB1 LINE L1 6 6865 -2 1968 153 0 0 chr3 213838986 213839280 -13685298 - AluSx SINE Alu -17 295 2 2126 103 4 0 chr3 213839607 213839879 -13684699 - AluSx SINE Alu -39 273 1 1242 72 6 22 chr3 213840295 213840475 -13684103 + MSTA-int LTR MaLR 1404 1580 0 2029 160 131 8 chr3 213840475 213840856 -13683722 + MSTA LTR MaLR 1 428 0 1395 213 25 34 chr3 213840861 213841181 -13683397 - MLT1A1 LTR MaLR -48 317 1 5284 91 0 9 chr3 213842558 213843253 -13681325 - LTR8 LTR ERV1 0 691 3 191 303 66 0 chr3 213843510 213843586 -13680992 - L2 LINE L2 -4 3268 3188 185 159 23 0 chr3 213844128 213844172 -13680406 + CT-rich Low_complexity Low_complexity 4 48 0 211 305 8 38 chr3 213844184 213844315 -13680263 + CT-rich Low_complexity Low_complexity 1 127 0 291 306 7 27 chr3 213844410 213844557 -13680021 + CT-rich Low_complexity Low_complexity 4 147 0 259 339 17 8 chr3 213844591 213844709 -13679869 + CT-rich Low_complexity Low_complexity 4 122 0 216 246 18 18 chr3 213845706 213845763 -13678815 - L2 LINE L2 -211 3061 3005 1693 181 3 35 chr3 213845889 213846199 -13678379 + AluJb SINE Alu 1 300 -12 492 288 121 14 chr3 213846392 213846607 -13677971 + MIR SINE MIR 11 248 -14 23 0 0 0 chr3 213846741 213846764 -13677814 + AT_rich Low_complexity Low_complexity 1 23 0 1308 117 20 0 chr3 213847569 213847766 -13676812 + L1PA16 LINE L1 5966 6166 0 760 299 113 10 chr3 213848237 213848756 -13675822 - L2 LINE L2 -123 3190 2615 260 304 71 71 chr3 213849188 213849366 -13675212 + L3 LINE CR1 1189 1369 -208 2326 129 28 6 chr3 213849366 213849722 -13674856 - THE1B LTR MaLR 0 364 1 260 304 71 71 chr3 213849722 213849826 -13674752 + L3 LINE CR1 1368 1471 -106 2076 239 74 12 chr3 213849843 213850344 -13674234 + MLT1F LTR MaLR 8 539 -3 234 288 27 18 chr3 213850733 213850844 -13673734 + (CATATA)n Simple_repeat Simple_repeat 5 116 0 1836 124 35 78 chr3 213851133 213851292 -13673286 - MER44D DNA MER2_type -1884 607 443 2204 115 13 3 chr3 213851292 213851596 -13672982 + AluSc SINE Alu 1 307 -2 1836 124 35 78 chr3 213851596 213851782 -13672796 - MER44D DNA MER2_type -2048 443 7 22 0 0 0 chr3 213852506 213852528 -13672050 + AT_rich Low_complexity Low_complexity 1 22 0 553 281 96 30 chr3 213852594 213852917 -13671661 - L1MC5 LINE L1 -303 7658 7307 2355 91 14 0 chr3 213852917 213853213 -13671365 - AluSg SINE Alu -10 300 1 553 281 96 30 chr3 213853213 213853255 -13671323 - L1MC5 LINE L1 -654 7307 7269 265 224 112 31 chr3 213853268 213853366 -13671212 - L1MC4a LINE L1 -459 7349 7244 871 274 133 67 chr3 213853391 213853469 -13671109 - L1MC5 LINE L1 -733 7228 7157 1795 161 16 7 chr3 213853469 213853774 -13670804 - AluSx SINE Alu -4 308 1 871 274 133 67 chr3 213853774 213855227 -13669351 - L1MC5 LINE L1 -804 7157 5582 29 28 0 0 chr3 213855316 213855352 -13669226 + AT_rich Low_complexity Low_complexity 1 36 0 239 291 127 8 chr3 213856497 213856631 -13667947 - L1MEd LINE L1 -5409 710 561 213 315 27 47 chr3 213856806 213856955 -13667623 - MIR SINE MIR -56 206 61 824 94 17 0 chr3 213856983 213857100 -13667478 - AluSg/x SINE Alu -12 300 182 2214 94 3 13 chr3 213857254 213857553 -13667025 - AluSx SINE Alu -16 296 1 1098 91 0 0 chr3 213857916 213858048 -13666530 + AluSx SINE Alu 17 148 -165 3519 58 0 9 chr3 213858050 213858501 -13666077 - LTR7 LTR ERV1 -2 448 2 2568 76 45 13 chr3 213858506 213858886 -13665692 - HERVH LTR ERV1 0 7713 7322 1425 124 18 9 chr3 213858884 213859102 -13665476 - HERVH LTR ERV1 -1894 5819 5600 * 4376 143 1 1 chr3 213859103 213859765 -13664813 - HERVH LTR ERV1 -2564 5149 4488 3413 117 2 6 chr3 213859767 213860271 -13664307 - HERVH LTR ERV1 -3720 3993 3492 992 120 7 0 chr3 213860261 213860411 -13664167 - HERVH LTR ERV1 -4423 3290 3140 * 20744 94 17 8 chr3 213860390 213863360 -13661218 - HERVH LTR ERV1 -4718 2995 1 3534 56 0 7 chr3 213863362 213863812 -13660766 - LTR7 LTR ERV1 -2 448 2 985 139 0 0 chr3 213863814 213863980 -13660598 + AluSx SINE Alu 143 308 0 1544 161 63 7 chr3 213864060 213864346 -13660232 - MER2 DNA MER2_type -43 302 1 4726 128 49 13 chr3 213864560 213865312 -13659266 + MER4E LTR ERV1 1 779 0 397 295 60 78 chr3 213865431 213865763 -13658815 + L3 LINE CR1 1238 1563 -14 190 254 0 36 chr3 213865768 213865823 -13658755 - MIR SINE MIR 0 262 210 2325 156 34 10 chr3 213865837 213866248 -13658330 + MER61C LTR ERV1 14 434 0 636 297 29 14 chr3 213866262 213866471 -13658107 - MIR SINE MIR -38 224 13 2594 52 0 0 chr3 213866758 213867066 -13657512 - AluY SINE Alu -3 308 1 340 295 83 62 chr3 213867566 213867703 -13656875 + MIR SINE MIR 9 155 -107 2018 108 62 108 chr3 213867703 213868173 -13656405 + LTR7 LTR ERV1 1 448 -2 340 295 83 62 chr3 213868173 213868276 -13656302 + MIR SINE MIR 155 254 -8 181 361 87 6 chr3 213868390 213868573 -13656005 - L2 LINE L2 -309 3004 2807 180 339 46 46 chr3 213869000 213869130 -13655448 - MIR3 SINE MIR -12 196 67 2138 179 100 19 chr3 213870657 213871136 -13653442 + MLT2B1 LTR ERVL 3 520 0 459 235 15 22 chr3 213871158 213871294 -13653284 - L1MC5 LINE L1 -32 7929 7795 291 227 52 31 chr3 213871351 213871448 -13653130 + L1MC5 LINE L1 7830 7928 -33 230 362 86 9 chr3 213871793 213871898 -13652680 + L3 LINE CR1 1369 1481 -96 191 250 77 0 chr3 213872097 213872149 -13652429 + L3 LINE CR1 1521 1576 -1 210 338 0 0 chr3 213872996 213873067 -13651511 + L2 LINE L2 3170 3240 -32 1260 212 3 94 chr3 213873373 213873703 -13650875 + AluSx SINE Alu 9 308 -4 672 230 8 0 chr3 213873711 213873837 -13650741 + FLAM_A SINE Alu 2 128 -5 180 0 0 0 chr3 213874204 213874224 -13650354 + (T)n Simple_repeat Simple_repeat 1 20 0 725 290 84 20 chr3 213874320 213874617 -13649961 + MLT1G1 LTR MaLR 1 316 -279 937 202 60 52 chr3 213874617 213874853 -13649725 - ERVL LTR ERVL -1268 4496 4256 2438 100 115 20 chr3 213874853 213875244 -13649334 - MSTA LTR MaLR 0 428 1 937 202 60 52 chr3 213875244 213875259 -13649319 - ERVL LTR ERVL -1508 4256 4243 * 1728 264 84 20 chr3 213875256 213875794 -13648784 + ERVL LTR ERVL 4466 5037 -727 309 26 0 0 chr3 213876357 213876395 -13648183 + (CA)n Simple_repeat Simple_repeat 2 39 0 833 152 0 0 chr3 213876726 213876851 -13647727 + FLAM_C SINE Alu 1 125 -18 564 243 47 18 chr3 213877120 213877289 -13647289 - MIR3 SINE MIR -25 183 10 546 291 25 46 chr3 213877684 213877921 -13646657 + MIR SINE MIR 10 241 -21 2057 129 4 0 chr3 213878099 213878377 -13646201 + AluSx SINE Alu 1 279 -33 225 0 0 0 chr3 213878377 213878402 -13646176 + (CAA)n Simple_repeat Simple_repeat 2 26 0 559 260 98 49 chr3 213878791 213879179 -13645399 + L1ME4a LINE L1 5715 6121 0 279 275 129 42 chr3 213880455 213880606 -13643972 + MIR3 SINE MIR 1 161 -62 406 191 56 0 chr3 213880889 213880978 -13643600 + MER5A DNA MER1_type 16 109 -80 205 189 19 38 chr3 213881155 213881208 -13643370 - L2 LINE L2 0 3272 3221 426 282 13 27 chr3 213884472 213884621 -13639957 + MER5B DNA MER1_type 1 147 -31 195 317 231 0 chr3 213884933 213885037 -13639541 + L2 LINE L2 3186 3313 0 485 234 68 64 chr3 213885428 213885663 -13638915 - L3 LINE CR1 -79 1498 1263 * 663 260 141 9 chr3 213885648 213886038 -13638540 + L2 LINE L2 2657 3096 -217 1917 60 0 4 chr3 213886826 213887060 -13637518 - AluY SINE Alu 0 311 79 292 183 83 58 chr3 213887093 213887213 -13637365 + LTR67 LTR ERVL 435 557 0 2281 119 3 0 chr3 213887355 213887665 -13636913 - AluSq SINE Alu -2 311 1 785 300 91 40 chr3 213887675 213888269 -13636309 + L2 LINE L2 1751 2374 -940 1305 161 54 166 chr3 213888276 213888710 -13635868 - L1MB4 LINE L1 -27 6153 5672 2642 132 31 19 chr3 213888710 213889133 -13635445 - MSTC LTR MaLR 0 428 1 4813 234 98 42 chr3 213889133 213890697 -13633881 - MSTC-int LTR MaLR 0 1651 1 286 139 0 0 chr3 213890699 213890742 -13633836 - MSTC LTR MaLR -2 426 384 1305 161 54 166 chr3 213890742 213890865 -13633713 - L1MB4 LINE L1 -508 5672 5647 371 171 106 81 chr3 213890844 213890967 -13633611 - L1M3a LINE L1 -5068 1497 1372 * 480 228 65 32 chr3 213890970 213891190 -13633388 - L1M3a LINE L1 -5708 938 489 180 262 0 0 chr3 213891866 213891908 -13632670 - MIR3 SINE MIR -3 205 164 347 291 10 0 chr3 213892537 213892640 -13631938 - MIR3 SINE MIR -12 196 93 385 310 183 0 chr3 213892664 213892861 -13631717 + MIR SINE MIR 20 252 -10 394 283 43 59 chr3 213893377 213893564 -13631014 + MIR3 SINE MIR 8 191 -17 2523 262 154 8 chr3 213893981 213895060 -13629518 - L2 LINE L2 0 3313 2074 249 279 81 27 chr3 213895058 213895169 -13629409 - MIR SINE MIR -76 132 16 * 711 278 6 0 chr3 213896882 213897058 -13627520 + MER5B DNA MER1_type 2 178 0 238 338 0 12 chr3 213897066 213897146 -13627432 + MIR SINE MIR 17 95 -167 1345 163 43 0 chr3 213897151 213897427 -13627151 - L1MC3 LINE L1 0 7785 7498 1753 196 81 20 chr3 213897427 213897684 -13626894 - MLT1C LTR MaLR 0 467 174 2263 120 3 0 chr3 213897684 213897993 -13626585 - AluSx SINE Alu -2 310 1 1753 196 81 20 chr3 213897993 213898144 -13626434 - MLT1C LTR MaLR -293 174 34 3772 192 54 4 chr3 213898153 213898949 -13625629 - L1MC3 LINE L1 -280 7505 6670 379 230 151 29 chr3 213898963 213899102 -13625476 + MIR SINE MIR 107 262 0 21 0 0 0 chr3 213900051 213900072 -13624506 + AT_rich Low_complexity Low_complexity 1 21 0 214 323 40 20 chr3 213900094 213900193 -13624385 + L3 LINE CR1 1394 1494 -83 186 384 14 0 chr3 213901007 213901080 -13623498 - MIR SINE MIR -97 165 92 254 227 80 0 chr3 213901823 213901898 -13622680 - MIR SINE MIR -93 115 35 187 231 138 15 chr3 213901988 213902053 -13622525 + L3 LINE CR1 598 670 -907 646 290 50 16 chr3 213902224 213902448 -13622130 - MIR SINE MIR -12 250 19 2445 96 0 6 chr3 213903032 213903344 -13621234 - AluSx SINE Alu -2 310 1 436 232 0 24 chr3 213903831 213903973 -13620605 + MIR SINE MIR 20 154 -62 196 211 35 18 chr3 213904091 213904148 -13620430 + MIR3 SINE MIR 112 169 -39 408 345 29 72 chr3 213904659 213904966 -13619612 + L2 LINE L2 2979 3272 0 416 320 23 40 chr3 213905060 213905235 -13619343 - MIR3 SINE MIR -18 190 19 451 231 45 64 chr3 213905958 213906114 -13618464 + L2 LINE L2 3160 3312 -1 479 263 7 53 chr3 213906117 213906269 -13618309 + MIR3 SINE MIR 61 205 -3 427 322 107 12 chr3 213906335 213906567 -13618011 + MIR SINE MIR 2 249 -13 373 286 92 8 chr3 213906757 213906876 -13617702 - MIR SINE MIR -83 179 51 2907 3 0 0 chr3 213906887 213907192 -13617386 - AluYa5 SINE Alu -6 305 1 442 266 44 0 chr3 213907192 213907305 -13617273 + LTR50 LTR ERVL 1 118 -677 612 213 209 0 chr3 213907432 213907667 -13616911 + LTR50 LTR ERVL 502 785 -10 400 315 83 96 chr3 213908155 213908603 -13615975 + L2 LINE L2 2831 3272 0 286 333 90 17 chr3 213908668 213908845 -13615733 - MIR3 SINE MIR -1 207 18 671 206 150 31 chr3 213909415 213909575 -13615003 + MER5A DNA MER1_type 4 182 -7 419 239 82 63 chr3 213909600 213909759 -13614819 + MER5B DNA MER1_type 17 178 0 353 303 19 65 chr3 213909760 213909915 -13614663 - MIR3 SINE MIR -49 159 12 1149 73 0 0 chr3 213910713 213910850 -13613728 + AluSc SINE Alu 161 297 -12 200 343 87 33 chr3 213911695 213911937 -13612641 + L2 LINE L2 2455 2709 -605 1169 292 89 39 chr3 213912572 213913086 -13611492 + MLT1K LTR MaLR 47 586 -2 180 411 22 0 chr3 213913112 213913202 -13611376 + L2 LINE L2 3024 3115 -198 518 318 46 17 chr3 213913243 213913416 -13611162 - MIR3 SINE MIR -21 187 10 219 161 48 16 chr3 213914496 213914558 -13610020 + GA-rich Low_complexity Low_complexity 1 64 0 406 365 143 6 chr3 213914660 213915156 -13609422 + L2 LINE L2 1937 2500 -814 195 349 72 24 chr3 213915552 213915718 -13608860 + L2 LINE L2 2507 2680 -634 399 232 0 36 chr3 213915725 213915837 -13608741 + MER5A DNA MER1_type 81 188 -1 501 269 50 7 chr3 213916952 213917093 -13607485 - MIR3 SINE MIR -25 183 37 296 288 166 14 chr3 213917703 213917842 -13606736 + L3 LINE CR1 1244 1403 -174 186 286 48 57 chr3 213917933 213918038 -13606540 - MIR3 SINE MIR -23 185 82 355 390 6 12 chr3 213919605 213919777 -13604801 + MIR3 SINE MIR 31 201 -7 202 280 84 56 chr3 213919801 213919908 -13604670 - MIR SINE MIR -65 143 34 432 254 201 0 chr3 213920776 213920910 -13603668 - MIR3 SINE MIR -11 197 37 331 360 76 17 chr3 213921595 213921608 -13602970 - MIR3 SINE MIR -7 201 190 2113 104 7 33 chr3 213921608 213921907 -13602671 + AluSp SINE Alu 1 291 -22 331 360 76 17 chr3 213921907 213922065 -13602513 - MIR3 SINE MIR -18 190 20 1001 93 74 19 chr3 213922602 213922764 -13601814 + THE1B LTR MaLR 194 364 0 2053 151 0 13 chr3 213923178 213923482 -13601096 - AluSx SINE Alu -12 300 1 258 325 55 49 chr3 213924356 213924519 -13600059 + L2 LINE L2 2643 2806 -508 2239 122 0 0 chr3 213924776 213925079 -13599499 + AluSx SINE Alu 1 303 -9 345 244 128 28 chr3 213926234 213926351 -13598227 + MER91C DNA MER1_type 6 132 -8 476 238 77 46 chr3 213927067 213927230 -13597348 - MIR3 SINE MIR 0 208 46 22 0 0 0 chr3 213927737 213927759 -13596819 + AT_rich Low_complexity Low_complexity 1 22 0 180 111 0 0 chr3 213929985 213930012 -13594566 + (GA)n Simple_repeat Simple_repeat 2 28 0 276 306 94 44 chr3 213930170 213930350 -13594228 - MIR3 SINE MIR -3 205 17 329 252 24 71 chr3 213930521 213930648 -13593930 + L2 LINE L2 3192 3312 -1 204 219 49 0 chr3 213930919 213930960 -13593618 - MIR SINE MIR -58 204 162 2358 106 0 0 chr3 213931592 213931904 -13592674 - AluSx SINE Alu 0 312 1 326 258 196 10 chr3 213932196 213932293 -13592285 - MIR3 SINE MIR -50 158 44 232 309 10 41 chr3 213932688 213932785 -13591793 - L3 LINE CR1 -74 1503 1410 838 198 68 6 chr3 213933156 213933333 -13591245 - MER5A DNA MER1_type 0 189 2 302 281 12 0 chr3 213933375 213933457 -13591121 - MER5B DNA MER1_type -66 112 30 2276 111 0 3 chr3 213933508 213933806 -13590772 - AluSq SINE Alu -16 297 1 342 331 43 7 chr3 213934394 213934533 -13590045 + MIR3 SINE MIR 23 166 -42 206 346 90 0 chr3 213934531 213934609 -13589969 - L3 LINE CR1 -7 1570 1486 * 513 271 96 35 chr3 213934751 213934980 -13589598 - L3 LINE CR1 -129 1448 1206 218 273 73 82 chr3 213935386 213935496 -13589082 + MER5A DNA MER1_type 78 186 -3 209 256 100 24 chr3 213935528 213935658 -13588920 - MIR SINE MIR -61 147 8 3516 70 11 4 chr3 213936105 213936563 -13588015 + L1PA8 LINE L1 5709 6169 -3 496 253 163 63 chr3 213936843 213937302 -13587276 - L2 LINE L2 -202 3070 2553 2127 198 68 29 chr3 213937593 213938138 -13586440 + MLT1E2 LTR MaLR 54 619 -7 415 196 0 219 chr3 213938722 213938941 -13585637 - MER45A DNA AcHobo -2 176 6 277 312 182 41 chr3 213939478 213939623 -13584955 - MIR SINE MIR -62 146 30 1896 174 5 57 chr3 213939874 213939910 -13584668 + MER57A LTR ERV1 1 37 -366 1579 172 7 54 chr3 213939910 213940231 -13584347 - AluJo SINE Alu 0 307 1 1896 174 5 57 chr3 213940231 213940327 -13584251 + MER57A LTR ERV1 37 136 -267 5363 148 28 26 chr3 213940327 213941248 -13583330 + MER49 LTR ERV1 1 923 0 1896 174 5 57 chr3 213941248 213941538 -13583040 + MER57A LTR ERV1 136 403 0 263 299 60 0 chr3 213941560 213941627 -13582951 + L2 LINE L2 3144 3214 -58 268 376 19 25 chr3 213941752 213941897 -13582681 - MIR3 SINE MIR -50 158 13 718 238 58 18 chr3 213941897 213942120 -13582458 + MER106A DNA MER1_type 1 232 -4 268 376 19 25 chr3 213942120 213942131 -13582447 - MIR3 SINE MIR -195 13 3 396 287 29 44 chr3 213942405 213942541 -13582037 + L2 LINE L2 2860 2993 -279 766 225 125 5 chr3 213943470 213943670 -13580908 - MIR SINE MIR -4 258 35 553 309 27 0 chr3 213943760 213943909 -13580669 - MIR SINE MIR -107 155 3 3185 239 8 16 chr3 213943959 213944782 -13579796 + L1ME2 LINE L1 5333 6149 -15 207 191 24 0 chr3 213944899 213944941 -13579637 + (TGGA)n Simple_repeat Simple_repeat 3 45 0 184 338 92 28 chr3 213945651 213945793 -13578785 - L2 LINE L2 -18 3254 3104 458 259 46 0 chr3 213945850 213945958 -13578620 + L2 LINE L2 3189 3301 -12 398 276 97 7 chr3 213947471 213947616 -13576962 + MIR3 SINE MIR 33 190 -18 447 206 75 9 chr3 213948135 213948242 -13576336 - MIR3 SINE MIR -5 203 90 268 271 0 47 chr3 213949594 213949679 -13574899 - MIR SINE MIR -112 150 70 2304 287 33 15 chr3 213949922 213950535 -13574043 + MLT2E LTR ERVL 1 624 -4 254 303 11 11 chr3 213950543 213950632 -13573946 + MLT1H-int LTR MaLR 5 93 -1278 1861 160 0 40 chr3 213950746 213951117 -13573461 + AluJb SINE Alu 1 358 0 314 255 42 126 chr3 213951117 213951331 -13573247 + MLT1H-int LTR MaLR 400 586 -785 2295 111 0 0 chr3 213951331 213951628 -13572950 + AluSg SINE Alu 1 297 -13 314 255 42 126 chr3 213951628 213951699 -13572879 + MLT1H-int LTR MaLR 586 661 -710 233 309 91 52 chr3 213952349 213952559 -13572019 + MLT1H-int LTR MaLR 1136 1353 -18 723 253 52 102 chr3 213952661 213952753 -13571825 + MLT1H LTR MaLR 127 222 -327 2887 161 6 6 chr3 213952753 213953238 -13571340 + MER31A LTR ERV1 1 485 0 723 253 52 102 chr3 213953238 213953584 -13570994 + MLT1H LTR MaLR 222 543 -6 339 352 112 6 chr3 213953649 213953828 -13570750 - L3 LINE CR1 -3 1574 1377 425 282 89 25 chr3 213953837 213954117 -13570461 + L1ME4a LINE L1 5630 5927 -194 191 143 0 0 chr3 213954230 213954265 -13570313 - L3 LINE CR1 -211 1366 1332 1936 174 23 74 chr3 213954948 213955435 -13569143 + MLT1C LTR MaLR 4 465 -2 401 350 0 0 chr3 213955436 213955576 -13569002 + MIR SINE MIR 110 249 -13 183 246 0 33 chr3 213955789 213955850 -13568728 - MIR3 SINE MIR -19 189 131 2051 133 10 0 chr3 213956474 213956774 -13567804 + AluSg SINE Alu 1 303 -7 275 311 22 0 chr3 213956899 213956989 -13567589 - MIR SINE MIR -84 124 33 198 255 149 15 chr3 213957098 213957175 -13567403 - MIR SINE MIR -106 102 19 824 229 86 50 chr3 213958044 213958324 -13566254 - MER63 DNA MER1_type -4 1056 767 1036 252 111 57 chr3 213958502 213958978 -13565600 + L2 LINE L2 2812 3313 0 491 272 37 42 chr3 213959616 213959807 -13564771 - MIR3 SINE MIR -8 200 11 239 256 171 0 chr3 213959796 213959878 -13564700 - L2 LINE L2 -31 3241 3146 * 199 258 175 21 chr3 213960245 213960342 -13564236 + MIR SINE MIR 90 201 -61 490 324 88 6 chr3 213960646 213960816 -13563762 - MIR SINE MIR -66 196 13 281 282 13 70 chr3 213960862 213961067 -13563511 - MIR SINE MIR -57 151 6 236 259 0 0 chr3 213961560 213961618 -13562960 - Charlie8 DNA MER1_type -994 1423 1366 575 290 177 11 chr3 213961623 213962002 -13562576 - Charlie8 DNA MER1_type -1900 517 76 406 330 47 30 chr3 213962602 213962838 -13561740 - L2 LINE L2 -556 2758 2519 463 288 78 16 chr3 213963438 213963629 -13560949 - MIR3 SINE MIR -3 205 3 326 316 18 18 chr3 213964287 213964401 -13560177 - MIR3 SINE MIR -14 194 81 2171 108 16 3 chr3 213964767 213965072 -13559506 + AluSc SINE Alu 1 309 0 205 246 35 35 chr3 213965593 213965650 -13558928 - MIR SINE MIR -118 90 34 949 197 16 22 chr3 213966852 213967035 -13557543 + MER20 DNA MER1_type 37 218 -1 495 319 54 11 chr3 213967226 213967411 -13557167 + MIR SINE MIR 20 212 -50 234 343 105 21 chr3 213968670 213968813 -13555765 + MIR3 SINE MIR 38 192 -16 246 313 178 18 chr3 213969327 213969710 -13554868 + L2 LINE L2 2291 2734 -580 668 314 52 5 chr3 213970034 213970244 -13554334 + MIR SINE MIR 31 250 -12 351 273 123 31 chr3 213970427 213970654 -13553924 + L1ME4a LINE L1 5873 6120 -1 190 355 91 8 chr3 213970936 213971057 -13553521 + MIR3 SINE MIR 12 142 -66 235 353 21 53 chr3 213971874 213972064 -13552514 - MIR3 SINE MIR -23 185 2 542 289 0 0 chr3 213972118 213972246 -13552332 - MER5B DNA MER1_type -46 132 5 289 349 45 8 chr3 213972280 213972412 -13552166 + MIR SINE MIR 3 139 -123 343 302 78 84 chr3 213972567 213972911 -13551667 - L2 LINE L2 -4 3268 2927 279 0 0 0 chr3 213973317 213973348 -13551230 + (TG)n Simple_repeat Simple_repeat 2 32 0 187 122 41 20 chr3 213974358 213974407 -13550171 + CT-rich Low_complexity Low_complexity 2 51 0 297 0 0 0 chr3 213974562 213974595 -13549983 + (TG)n Simple_repeat Simple_repeat 2 34 0 198 0 0 0 chr3 213974595 213974617 -13549961 + (GA)n Simple_repeat Simple_repeat 2 23 0 376 308 82 6 chr3 213975217 213975376 -13549202 - MIR SINE MIR -14 248 78 652 226 95 21 chr3 213975407 213975597 -13548981 - MIR SINE MIR -6 256 53 227 225 54 0 chr3 213975762 213975833 -13548745 + MIR SINE MIR 79 157 -51 198 274 126 32 chr3 213976840 213976935 -13547643 + MIR3 SINE MIR 15 118 -90 242 339 0 55 chr3 213977672 213977781 -13546797 - MER5B DNA MER1_type -37 141 39 291 235 37 25 chr3 213977781 213977862 -13546716 + HsTC2 DNA Tc2 1815 1896 -2 192 267 67 0 chr3 213977919 213977964 -13546614 - MIR SINE MIR -122 140 93 1853 164 10 0 chr3 213978159 213978452 -13546126 + MLT1B LTR MaLR 1 296 -94 563 232 23 14 chr3 213978455 213978630 -13545948 + Ricksha DNA DNA 4 285 -969 * 9004 136 48 17 chr3 213978629 213980034 -13544544 + Ricksha DNA DNA 1690 3145 -101 2405 73 0 20 chr3 213980034 213980337 -13544241 - AluSq SINE Alu -16 297 1 9004 136 48 17 chr3 213980337 213980417 -13544161 + Ricksha DNA DNA 3145 3221 -25 588 187 6 10 chr3 213980417 213980531 -13544047 + MLT1B LTR MaLR 277 390 0 428 252 87 16 chr3 213980757 213980884 -13543694 - MLT1L LTR MaLR -174 441 306 256 310 11 11 chr3 213980905 213980992 -13543586 - MLT1J LTR MaLR -331 180 94 253 288 100 18 chr3 213981073 213981243 -13543335 - MER113 DNA MER1_type? -103 418 235 2039 144 0 0 chr3 213981261 213981552 -13543026 + AluSx SINE Alu 2 292 -20 2005 130 3 13 chr3 213981577 213981877 -13542701 - AluSx SINE Alu -15 297 1 21 57 0 0 chr3 213981923 213981958 -13542620 + AT_rich Low_complexity Low_complexity 1 35 0 2772 201 14 51 chr3 213982016 213982587 -13541991 + MLT2B3 LTR ERVL 5 554 0 225 65 0 0 chr3 213982771 213982802 -13541776 + (TG)n Simple_repeat Simple_repeat 2 32 0 314 226 63 126 chr3 213982980 213983169 -13541409 - MIR3 SINE MIR -69 193 15 3234 118 44 35 chr3 213983182 213983530 -13541048 - L1MA8 LINE L1 -2 6289 5933 2408 157 40 30 chr3 213983530 213983725 -13540853 + MSTB1 LTR MaLR 1 193 -239 1968 102 67 3 chr3 213983725 213984008 -13540570 + AluSx SINE Alu 1 301 -11 2408 157 40 30 chr3 213984008 213984240 -13540338 + MSTB1 LTR MaLR 193 432 0 3234 118 44 35 chr3 213984240 213984457 -13540121 - L1MA8 LINE L1 -358 5933 5719 227 93 23 0 chr3 213985173 213985216 -13539362 + (TTTTG)n Simple_repeat Simple_repeat 1 44 0 1592 136 38 0 chr3 213985219 213985454 -13539124 - AluSx SINE Alu -36 276 33 2176 155 25 48 chr3 213985478 213985877 -13538701 + MLT1B LTR MaLR 1 390 0 344 279 8 0 chr3 213985942 213986064 -13538514 + CT-rich Low_complexity Low_complexity 2 124 0 767 141 43 0 chr3 213986076 213986239 -13538339 + CT-rich Low_complexity Low_complexity 4 173 0 231 258 34 45 chr3 213986258 213986347 -13538231 - 7SLRNA srpRNA srpRNA -1 319 232 294 279 198 32 chr3 213986548 213986921 -13537657 + L2 LINE L2 470 904 -2410 781 277 32 87 chr3 213987147 213987526 -13537052 + L2 LINE L2 2949 3306 -7 500 283 63 21 chr3 213987874 213988065 -13536513 - L2 LINE L2 -510 2804 2606 637 204 160 39 chr3 213988070 213988276 -13536302 - ORSL DNA AcHobo -3 272 42 190 341 63 54 chr3 213988296 213988501 -13536077 - L2 LINE L2 -722 2592 2386 207 282 48 57 chr3 213988575 213988699 -13535879 - MER5A DNA MER1_type -1 188 66 2071 83 25 4 chr3 213988780 213989104 -13535474 + AluY SINE Alu 1 330 0 32 57 0 0 chr3 213989499 213989552 -13535026 + AT_rich Low_complexity Low_complexity 1 53 0 11170 170 52 32 chr3 213989553 213990030 -13534548 - L1MA8 LINE L1 -5 6286 5820 348 24 0 0 chr3 213990030 213990071 -13534507 + (TG)n Simple_repeat Simple_repeat 2 42 0 11170 170 52 32 chr3 213990071 213991410 -13533168 - L1MA8 LINE L1 -471 5820 4509 1507 171 99 60 chr3 213991410 213991744 -13532834 + MER7A DNA MER2_type 2 346 0 11170 170 52 32 chr3 213991744 213991792 -13532786 - L1MA8 LINE L1 -1782 4509 4463 2005 130 23 13 chr3 213991792 213992100 -13532478 - AluSx SINE Alu -1 311 1 11170 170 52 32 chr3 213992100 213993596 -13530982 - L1MA8 LINE L1 -1828 4463 2854 211 282 51 51 chr3 213993956 213994034 -13530544 - MIR SINE MIR -122 140 63 207 276 8 31 chr3 213994710 213994837 -13529741 + CT-rich Low_complexity Low_complexity 1 124 0 207 0 0 0 chr3 213994849 213994872 -13529706 + (TC)n Simple_repeat Simple_repeat 1 23 0 230 263 9 26 chr3 213994885 213994999 -13529579 + CT-rich Low_complexity Low_complexity 1 112 0 216 0 0 0 chr3 213995010 213995034 -13529544 + (TC)n Simple_repeat Simple_repeat 1 24 0 357 273 0 29 chr3 213995047 213995219 -13529359 + CT-rich Low_complexity Low_complexity 2 168 0 240 279 0 62 chr3 213995256 213995435 -13529143 + CT-rich Low_complexity Low_complexity 1 168 0 213 298 31 12 chr3 213995454 213995615 -13528963 + (CATCC)n Simple_repeat Simple_repeat 3 166 0 243 180 0 16 chr3 213995732 213995793 -13528785 - L1MD3 LINE L1 -82 7913 7854 474 187 37 0 chr3 213995802 213995909 -13528669 - L1MD1 LINE L1 -3 6239 6129 32 26 0 0 chr3 213996014 213996053 -13528525 + AT_rich Low_complexity Low_complexity 1 39 0 213 245 226 28 chr3 213996275 213996381 -13528197 - L3 LINE CR1 -79 1498 1372 378 216 88 29 chr3 213996387 213996489 -13528089 + L2 LINE L2 3206 3313 0 271 302 8 56 chr3 213997228 213997354 -13527224 + MIR3 SINE MIR 82 201 -7 381 222 120 0 chr3 213997410 213997518 -13527060 + MER112 DNA MER1_type 12 132 -128 886 234 52 9 chr3 213997519 213997670 -13526908 + L1ME1 LINE L1 4789 4955 -1191 183 114 0 0 chr3 213997670 213997705 -13526873 + (TAAA)n Simple_repeat Simple_repeat 2 36 0 886 234 52 9 chr3 213997705 213997784 -13526794 + L1ME1 LINE L1 4955 5029 -1117 * 919 250 64 35 chr3 213997772 213998116 -13526462 + L1ME1 LINE L1 5804 6157 -9 2172 116 0 3 chr3 213998721 213999015 -13525563 + AluSx SINE Alu 1 293 -19 193 355 100 20 chr3 213999358 213999558 -13525020 - L3 LINE CR1 -672 905 690 305 333 42 54 chr3 214000287 214000455 -13524123 + MER5A DNA MER1_type 1 166 -23 1075 221 0 0 chr3 214000499 214000694 -13523884 - AluJb SINE Alu -32 280 86 342 0 0 0 chr3 214000710 214000748 -13523830 + (TG)n Simple_repeat Simple_repeat 1 38 0 1599 173 53 0 chr3 214000749 214001015 -13523563 - AluSx SINE Alu -32 280 1 217 288 264 32 chr3 214002704 214002829 -13521749 + MIR SINE MIR 23 176 -86 407 308 17 8 chr3 214002834 214002951 -13521627 - L2 LINE L2 -5 3267 3150 2085 94 4 0 chr3 214003967 214004233 -13520345 + AluSx SINE Alu 14 280 -32 228 35 0 0 chr3 214004236 214004265 -13520313 + (TAAAA)n Simple_repeat Simple_repeat 2 30 0 954 290 31 25 chr3 214004372 214004689 -13519889 + L2 LINE L2 2399 2717 -597 279 316 11 0 chr3 214005252 214005347 -13519231 - MIR SINE MIR -1 261 166 4235 105 18 91 chr3 214005355 214006071 -13518507 - MER4A LTR ERV1 0 664 1 974 244 71 39 chr3 214006083 214006653 -13517925 - L2 LINE L2 -67 3246 2659 1552 172 197 16 chr3 214006653 214006973 -13517605 + MER83B LTR ERV1 1 378 0 3250 273 69 15 chr3 214006975 214008042 -13516536 - L2 LINE L2 -654 2660 1536 2866 156 15 0 chr3 214008047 214008502 -13516076 - MLT1C LTR MaLR -5 462 1 1492 296 47 13 chr3 214008502 214009030 -13515548 - L2 LINE L2 -1774 1540 995 567 220 78 7 chr3 214009028 214009169 -13515409 - MIR SINE MIR -90 172 22 * 301 330 60 11 chr3 214009631 214009813 -13514765 + L3 LINE CR1 1381 1571 -6 246 254 0 0 chr3 214009992 214010055 -13514523 - L2 LINE L2 0 3272 3210 362 212 30 50 chr3 214010503 214010602 -13513976 + L2 LINE L2 1026 1122 -2192 195 286 71 0 chr3 214010920 214010976 -13513602 + L3b LINE CR1 1524 1583 0 22 35 0 0 chr3 214011773 214011802 -13512776 + AT_rich Low_complexity Low_complexity 1 29 0 1084 109 0 0 chr3 214011979 214012165 -13512413 + AluSg/x SINE Alu 137 322 0 854 305 26 41 chr3 214012166 214012327 -13512251 + HAL1 LINE L1 1154 1316 -1191 2208 103 0 23 chr3 214012327 214012629 -13511949 - AluSg1 SINE Alu -14 295 1 854 305 26 41 chr3 214012629 214012959 -13511619 + HAL1 LINE L1 1316 1638 -869 490 214 0 132 chr3 214013455 214013528 -13511050 + MER5B DNA MER1_type 38 80 -98 1885 165 0 7 chr3 214013528 214013819 -13510759 + AluJo SINE Alu 12 300 -12 490 214 0 132 chr3 214013819 214013904 -13510674 + MER5B DNA MER1_type 80 175 -3 1919 140 84 34 chr3 214014564 214014920 -13509658 - THE1C LTR MaLR -1 374 1 269 299 12 11 chr3 214015634 214015736 -13508842 - MER5B DNA MER1_type -68 121 19 254 284 59 10 chr3 214016401 214016503 -13508075 + MIR3 SINE MIR 54 160 -48 343 284 21 84 chr3 214016503 214016693 -13507885 - MER5B DNA MER1_type 0 178 1 194 367 38 0 chr3 214016975 214017054 -13507524 - L2 LINE L2 -50 3263 3182 2170 145 0 0 chr3 214017059 214017370 -13507208 - AluSq SINE Alu -2 311 1 290 207 35 0 chr3 214017603 214017661 -13506917 - MIR SINE MIR -61 147 88 314 314 57 9 chr3 214018399 214018504 -13506074 - MER5B DNA MER1_type -68 110 1 462 268 57 11 chr3 214018504 214018651 -13505927 - MIR3 SINE MIR -48 160 7 272 254 127 45 chr3 214018772 214018882 -13505696 - MIR SINE MIR -74 134 16 223 324 79 72 chr3 214019497 214019730 -13504848 + L2 LINE L2 2450 2687 -627 2419 86 0 6 chr3 214019730 214020044 -13504534 - AluSx SINE Alu 0 312 1 223 324 79 72 chr3 214020044 214020100 -13504478 + L2 LINE L2 2687 2741 -573 356 380 123 15 chr3 214020324 214020648 -13503930 + L3 LINE CR1 1216 1574 -3 195 324 0 14 chr3 214020813 214020884 -13503694 - MIR SINE MIR -78 130 61 2402 104 0 0 chr3 214021612 214021919 -13502659 + AluSc SINE Alu 3 309 0 898 243 44 5 chr3 214022186 214022392 -13502186 - MER58A DNA MER1_type 0 224 11 254 300 67 3 chr3 214022850 214023000 -13501578 + MIR SINE MIR 43 253 -9 276 351 61 30 chr3 214024001 214024166 -13500412 - L3 LINE CR1 -5 1572 1403 2079 119 7 7 chr3 214024419 214024713 -13499865 + AluSq SINE Alu 1 294 -19 210 167 0 0 chr3 214025334 214025370 -13499208 + A-rich Low_complexity Low_complexity 6 41 0 571 314 88 86 chr3 214025387 214026137 -13498441 + HAL1b LINE L1 61 517 -831 2196 99 3 0 chr3 214026670 214026984 -13497594 + AluSq SINE Alu 1 315 0 2390 281 88 44 chr3 214026996 214028487 -13496091 + L1ME3A LINE L1 3527 5158 -1012 2233 109 3 6 chr3 214028487 214028800 -13495778 - AluSp SINE Alu -1 312 1 2390 281 88 44 chr3 214028800 214029631 -13494947 + L1ME3A LINE L1 5158 5951 -219 3585 147 35 19 chr3 214029911 214029995 -13494583 - L1MA8 LINE L1 -388 5903 5822 2282 100 0 13 chr3 214029995 214030305 -13494273 - AluSg1 SINE Alu -3 306 1 3585 147 35 19 chr3 214030305 214031230 -13493348 - L1MA8 LINE L1 -469 5822 4877 1713 164 62 29 chr3 214031216 214031557 -13493021 + L1MA7 LINE L1 5915 6266 -25 * 2140 110 10 3 chr3 214031567 214031867 -13492711 + AluSc SINE Alu 1 302 -7 25 31 0 0 chr3 214032587 214032619 -13491959 + AT_rich Low_complexity Low_complexity 1 32 0 2445 97 0 0 chr3 214032715 214033025 -13491553 + AluSx SINE Alu 1 310 -2 1028 285 146 13 chr3 214033551 214033927 -13490651 - MLT1K LTR MaLR -23 565 140 292 252 87 17 chr3 214034044 214034159 -13490419 - L2 LINE L2 0 3313 3191 318 288 14 72 chr3 214034424 214034563 -13490015 - HAL1b LINE L1 -862 486 356 444 330 37 72 chr3 214036182 214036211 -13488367 - L2 LINE L2 -20 3252 3224 2723 148 14 27 chr3 214036211 214036651 -13487927 - Tigger2a DNA MER2_type 0 434 1 444 330 37 72 chr3 214036651 214036969 -13487609 - L2 LINE L2 -48 3224 2917 483 262 232 18 chr3 214036974 214037142 -13487436 + MIR SINE MIR 21 224 -38 694 154 24 18 chr3 214037674 214037843 -13486735 + CT-rich Low_complexity Low_complexity 3 172 0 276 328 84 25 chr3 214037846 214037965 -13486613 - L2 LINE L2 -9 3263 3138 2097 160 33 8 chr3 214038368 214038736 -13485842 + L1MB8 LINE L1 5797 6173 -5 1435 148 14 14 chr3 214038845 214039062 -13485516 + MER20 DNA MER1_type 3 219 0 664 321 137 40 chr3 214039238 214040457 -13484121 - L2 LINE L2 -706 2608 1272 327 49 0 0 chr3 214040514 214040555 -13484023 + (TG)n Simple_repeat Simple_repeat 2 42 0 249 245 92 10 chr3 214041334 214041432 -13483146 - L3 LINE CR1 -7 1570 1465 448 317 118 6 chr3 214042010 214042171 -13482407 - MIR3 SINE MIR -12 196 18 220 328 43 26 chr3 214043478 214043593 -13480985 + MIR SINE MIR 21 137 -71 326 331 81 7 chr3 214043593 214043741 -13480837 + MER5B DNA MER1_type 2 160 -18 248 259 0 0 chr3 214044109 214044163 -13480415 - MIR SINE MIR -111 151 98 2204 229 17 55 chr3 214044622 214045093 -13479485 - L1MCa LINE L1 -5839 587 141 517 17 0 0 chr3 214045093 214045152 -13479426 + L1PA6 LINE L1 6092 6150 -4 2204 229 17 55 chr3 214045152 214045262 -13479316 - L1MCa LINE L1 -6285 141 28 347 344 8 0 chr3 214045314 214045442 -13479136 - LTR16C LTR ERVL 0 491 363 396 308 154 0 chr3 214046340 214046509 -13478069 + MER117 DNA MER1_type 1 195 -2 304 229 162 29 chr3 214046697 214046802 -13477776 + MIR3 SINE MIR 90 208 0 216 0 0 0 chr3 214046824 214046848 -13477730 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 201 250 0 0 chr3 214046897 214046937 -13477641 + polypyrimidine Low_complexity Low_complexity 2 41 0 4072 185 70 28 chr3 214046987 214047814 -13476764 + MER21B LTR ERV1 2 863 0 484 246 101 62 chr3 214048103 214048201 -13476377 + MIR3 SINE MIR 11 121 -87 2003 147 6 10 chr3 214048201 214048515 -13476063 - AluSq SINE Alu 0 313 1 484 246 101 62 chr3 214048515 214048595 -13475983 + MIR3 SINE MIR 121 196 -12 183 364 8 25 chr3 214048849 214048967 -13475611 - L3 LINE CR1 -2 1575 1460 233 328 9 35 chr3 214049135 214049251 -13475327 + MIR SINE MIR 7 119 -89 214 236 79 56 chr3 214049360 214049449 -13475129 + L2 LINE L2 3138 3228 -44 4283 129 169 97 chr3 214049450 214050680 -13473898 - pTR5 LTR ERV1 0 1522 6 195 298 81 85 chr3 214051855 214052090 -13472488 + L2 LINE L2 2838 3071 -201 217 150 0 33 chr3 214052134 214052194 -13472384 + (TA)n Simple_repeat Simple_repeat 2 59 0 33 25 0 0 chr3 214052199 214052239 -13472339 + AT_rich Low_complexity Low_complexity 1 40 0 362 278 40 8 chr3 214052826 214052952 -13471626 + MIR SINE MIR 40 169 -93 2091 223 58 4 chr3 214054189 214054668 -13469910 + MLT1D LTR MaLR 1 505 0 285 265 15 0 chr3 214055627 214055695 -13468883 + MIR SINE MIR 81 149 -59 548 292 147 19 chr3 214055695 214056007 -13468571 + HAL1 LINE L1 8 359 -2148 616 279 93 78 chr3 214056008 214056640 -13467938 + HAL1 LINE L1 379 1020 -1487 311 325 46 46 chr3 214056981 214057264 -13467314 - ERVL LTR ERVL -431 5333 5051 5342 94 4 3 chr3 214057273 214058016 -13466562 - L1PA13 LINE L1 0 6163 5420 300 221 81 35 chr3 214058130 214058216 -13466362 - ERVL LTR ERVL -825 4939 4850 351 283 97 7 chr3 214058938 214059083 -13465495 + MIR3 SINE MIR 33 190 -18 411 206 75 9 chr3 214059602 214059709 -13464869 - MIR3 SINE MIR -5 203 90 246 271 0 47 chr3 214061064 214061149 -13463429 - MIR SINE MIR -112 150 70 2120 286 33 15 chr3 214061392 214062005 -13462573 + MLT2E LTR ERVL 1 624 -4 249 303 11 11 chr3 214062013 214062102 -13462476 + MLT1D-int LTR MaLR 5 93 -1278 1882 160 0 40 chr3 214062216 214062587 -13461991 + AluJb SINE Alu 1 358 0 299 279 51 71 chr3 214062587 214062784 -13461794 + MLT1D-int LTR MaLR 400 592 -779 2181 116 0 3 chr3 214062801 214063095 -13461483 + AluSx SINE Alu 1 293 -19 256 333 42 54 chr3 214064367 214064535 -13460043 + MER5A DNA MER1_type 1 166 -23 1081 221 0 0 chr3 214064579 214064774 -13459804 - AluJb SINE Alu -32 280 86 342 0 0 0 chr3 214064790 214064828 -13459750 + (TG)n Simple_repeat Simple_repeat 1 38 0 1580 177 53 0 chr3 214064829 214065095 -13459483 - AluSx SINE Alu -32 280 1 183 365 37 9 chr3 214065152 214065259 -13459319 + L2 LINE L2 2716 2825 -489 371 308 17 8 chr3 214066914 214067031 -13457547 - L2 LINE L2 -5 3267 3150 2105 97 4 0 chr3 214068045 214068313 -13456265 + AluSx SINE Alu 12 280 -32 189 74 0 0 chr3 214068318 214068345 -13456233 + (TAAAA)n Simple_repeat Simple_repeat 4 30 0 870 290 31 25 chr3 214068452 214068769 -13455809 + L2 LINE L2 2399 2717 -597 256 316 11 0 chr3 214069332 214069427 -13455151 - MIR SINE MIR -1 261 166 3851 109 19 93 chr3 214069435 214070152 -13454426 - MER4A LTR ERV1 0 664 1 546 267 56 71 chr3 214070164 214070750 -13453828 - L2 LINE L2 -67 3246 2659 1557 172 197 16 chr3 214070750 214071070 -13453508 + MER83B LTR ERV1 1 378 0 2940 275 68 14 chr3 214071072 214072139 -13452439 - L2 LINE L2 -654 2660 1536 2866 156 15 0 chr3 214072144 214072599 -13451979 - MLT1C LTR MaLR -5 462 1 1335 296 47 13 chr3 214072599 214073127 -13451451 - L2 LINE L2 -1774 1540 995 519 220 78 7 chr3 214073125 214073266 -13451312 - MIR SINE MIR -90 172 22 * 248 330 60 11 chr3 214073728 214073910 -13450668 + L3 LINE CR1 1381 1571 -6 231 224 0 0 chr3 214074089 214074147 -13450431 - L2 LINE L2 0 3272 3215 334 212 30 50 chr3 214074600 214074699 -13449879 + L2 LINE L2 1026 1122 -2192 181 286 71 0 chr3 214075017 214075073 -13449505 + L3b LINE CR1 1524 1583 0 22 35 0 0 chr3 214075870 214075899 -13448679 + AT_rich Low_complexity Low_complexity 1 29 0 798 136 0 21 chr3 214076057 214076197 -13448381 + AluSg/x SINE Alu 117 253 -59 393 331 11 34 chr3 214077818 214077993 -13446585 - MERVL LTR ERVL -853 4632 4462 1876 146 11 54 chr3 214078008 214078358 -13446220 - MLT1C LTR MaLR -132 335 1 4503 333 66 28 chr3 214078375 214080965 -13443613 - MERVL LTR ERVL -1274 4490 2000 321 26 0 0 chr3 214080965 214081003 -13443575 + (TG)n Simple_repeat Simple_repeat 1 38 0 4503 333 66 28 chr3 214081003 214081082 -13443496 - MERVL LTR ERVL -3764 2000 1925 1891 67 0 0 chr3 214081082 214081306 -13443272 + AluY SINE Alu 82 305 -6 4503 333 66 28 chr3 214081306 214081339 -13443239 - MERVL LTR ERVL -3839 1925 1609 1800 269 124 50 chr3 214081340 214082589 -13441989 + HAL1 LINE L1 1166 2507 0 589 226 9 0 chr3 214082703 214082818 -13441760 - FLAM_A SINE Alu -17 116 1 2251 106 13 0 chr3 214082865 214083167 -13441411 - AluSx SINE Alu -6 306 1 1350 103 31 0 chr3 214083168 214083362 -13441216 - MSTB1 LTR MaLR -232 200 1 1723 126 72 23 chr3 214083362 214083710 -13440868 + L1MA8 LINE L1 5925 6289 -2 276 263 88 26 chr3 214083723 214083837 -13440741 + MIR3 SINE MIR 15 135 -73 225 65 0 0 chr3 214084090 214084121 -13440457 + (CA)n Simple_repeat Simple_repeat 2 32 0 2589 201 14 51 chr3 214084305 214084876 -13439702 - MLT2B3 LTR ERVL 0 554 5 21 57 0 0 chr3 214084934 214084969 -13439609 + AT_rich Low_complexity Low_complexity 1 35 0 1769 148 7 17 chr3 214085016 214085306 -13439272 + AluSx SINE Alu 1 287 -25 416 254 10 72 chr3 214085506 214085699 -13438879 - MLT1C LTR MaLR -240 227 47 14915 24 1 1 chr3 214085708 214088114 -13436464 - L1PA3 LINE L1 -68 6087 3680 891 78 0 0 chr3 214088215 214088331 -13436247 + HERVH LTR ERV1 3879 3994 -3719 * 4470 147 0 3 chr3 214088321 214088995 -13435583 + HERVH LTR ERV1 4478 5149 -2564 1358 138 18 5 chr3 214088996 214089213 -13435365 + HERVH LTR ERV1 5600 5819 -1894 * 2258 107 64 13 chr3 214089211 214089584 -13434994 + HERVH LTR ERV1 7322 7713 0 2712 85 94 10 chr3 214089584 214089997 -13434581 + LTR7 LTR ERV1 1 448 -2 1188 85 62 46 chr3 214090110 214090384 -13434194 - MER4-int LTR ERV1 -4281 1268 503 1949 144 80 36 chr3 214090429 214090818 -13433760 + LTR8A LTR ERV1 1 406 -321 3876 142 10 2 chr3 214090818 214091423 -13433155 - MER41B LTR ERV1 0 635 26 1555 286 75 27 chr3 214091523 214092146 -13432432 + MLT2F LTR ERVL 11 663 0 837 261 17 21 chr3 214092150 214092388 -13432190 - MIR SINE MIR -13 249 13 181 316 44 44 chr3 214092344 214092458 -13432120 + MIR3 SINE MIR 84 197 -11 * 430 235 183 7 chr3 214092499 214092652 -13431926 + MER5A DNA MER1_type 9 188 -1 492 122 0 0 chr3 214092679 214092761 -13431817 + (TG)n Simple_repeat Simple_repeat 2 83 0 254 153 0 51 chr3 214093735 214093794 -13430784 - MIR SINE MIR -108 154 99 339 281 25 25 chr3 214094483 214094604 -13429974 + L2 LINE L2 3193 3313 0 273 119 0 0 chr3 214094606 214094648 -13429930 + (TGAA)n Simple_repeat Simple_repeat 4 45 0 373 231 0 0 chr3 214095498 214095563 -13429015 + LTR8A LTR ERV1 663 727 0 251 345 0 17 chr3 214096288 214096404 -13428174 - 7SK RNA RNA -74 119 6 823 265 34 13 chr3 214096893 214097127 -13427451 + MIR SINE MIR 14 252 -10 207 339 0 0 chr3 214097080 214097142 -13427436 + L2 LINE L2 3251 3312 -1 * 204 255 0 0 chr3 214098499 214098546 -13426032 + T-rich Low_complexity Low_complexity 1 47 0 189 74 0 0 chr3 214098645 214098672 -13425906 + (TC)n Simple_repeat Simple_repeat 2 28 0 374 235 16 89 chr3 214099137 214099311 -13425267 + MIR SINE MIR 30 192 -66 2024 149 0 25 chr3 214099527 214099842 -13424736 + AluSx SINE Alu 2 308 -4 368 308 30 15 chr3 214100598 214100731 -13423847 + MIR SINE MIR 8 142 -120 313 271 107 33 chr3 214101369 214101491 -13423087 - L2 LINE L2 -2 3270 3140 21 36 0 0 chr3 214101719 214101747 -13422831 + AT_rich Low_complexity Low_complexity 1 28 0 180 274 10 69 chr3 214102013 214102115 -13422463 - L2 LINE L2 -181 3091 2996 861 204 29 0 chr3 214102442 214102614 -13421964 - MER5B DNA MER1_type 0 178 2 429 341 67 17 chr3 214102811 214102990 -13421588 + MER5A DNA MER1_type 1 188 -1 525 272 95 0 chr3 214103044 214103213 -13421365 - MIR SINE MIR 0 262 78 203 0 0 36 chr3 214104170 214104198 -13420380 + (TTTTG)n Simple_repeat Simple_repeat 2 28 0 219 196 22 22 chr3 214104210 214104256 -13420322 + L2 LINE L2 3204 3249 -23 183 42 0 0 chr3 214104313 214104337 -13420241 + (CA)n Simple_repeat Simple_repeat 1 24 0 257 301 216 13 chr3 214104753 214104906 -13419672 - MIR3 SINE MIR -15 193 10 191 175 50 0 chr3 214105394 214105434 -13419144 + MIR SINE MIR 120 161 -101 390 221 181 8 chr3 214105846 214105973 -13418605 - MIR SINE MIR -24 238 90 1567 199 114 39 chr3 214106336 214106799 -13417779 - MLT1D LTR MaLR -7 498 1 470 312 53 53 chr3 214106948 214107435 -13417143 + L1MEd LINE L1 535 1021 -5098 2302 132 5 48 chr3 214107582 214107976 -13416602 + MER51B LTR ERV1 1 377 0 289 317 41 0 chr3 214107992 214108137 -13416441 + HAL1 LINE L1 1404 1554 -953 420 339 57 6 chr3 214108751 214108928 -13415650 + MIR3 SINE MIR 16 201 -7 194 297 139 30 chr3 214109070 214109171 -13415407 - MIR SINE MIR -78 130 19 307 344 96 48 chr3 214109827 214110057 -13414521 + MIR SINE MIR 22 262 0 871 238 35 55 chr3 214110168 214110512 -13414066 - LTR37A LTR ERV1 -5 421 85 637 213 8 8 chr3 214110520 214110647 -13413931 + FLAM_A SINE Alu 1 127 -15 357 300 14 57 chr3 214110803 214110943 -13413635 + MIR3 SINE MIR 31 164 -44 598 239 7 7 chr3 214111219 214111374 -13413204 + MLT2D LTR ERVL 91 245 -169 268 285 10 119 chr3 214111728 214111921 -13412657 - MIR SINE MIR -12 250 79 234 272 183 21 chr3 214112427 214112577 -13412001 + MIR SINE MIR 19 193 -69 1407 208 22 16 chr3 214112614 214112746 -13411832 - MER58B DNA MER1_type -2083 337 207 2552 197 11 13 chr3 214112746 214113219 -13411359 + MER70A LTR ERVL 1 472 0 1407 208 22 16 chr3 214113219 214113403 -13411175 - MER58B DNA MER1_type -2213 207 19 343 257 9 55 chr3 214114017 214114126 -13410452 - MIR SINE MIR -51 211 108 1703 99 0 5 chr3 214115419 214115641 -13408937 - AluSq SINE Alu -12 301 81 1209 89 0 0 chr3 214116387 214116533 -13408045 - AluSg/x SINE Alu -89 223 78 216 164 0 73 chr3 214116973 214117028 -13407550 + L2 LINE L2 3213 3263 -9 238 203 58 14 chr3 214117169 214117238 -13407340 + MIR SINE MIR 67 138 -70 550 271 61 42 chr3 214117255 214117517 -13407061 + MLT2F LTR ERVL 1 267 -396 350 337 108 0 chr3 214117643 214117809 -13406769 + MIR SINE MIR 8 191 -71 205 255 21 0 chr3 214117849 214117896 -13406682 + L2 LINE L2 3259 3306 -7 1411 226 83 6 chr3 214117975 214118338 -13406240 + MSTD LTR MaLR 6 396 0 396 277 24 78 chr3 214118609 214118657 -13405921 + L3 LINE CR1 1203 1252 -325 1463 181 3 92 chr3 214118657 214118983 -13405595 - AluJo SINE Alu -13 299 3 396 277 24 78 chr3 214118983 214119100 -13405478 + L3 LINE CR1 1252 1359 -218 329 159 0 14 chr3 214119382 214119451 -13405127 + (CA)n Simple_repeat Simple_repeat 1 68 0 766 274 78 48 chr3 214120167 214120602 -13403976 + MLT1H LTR MaLR 86 533 -16 372 260 188 11 chr3 214120789 214120970 -13403608 + L3 LINE CR1 1345 1557 -20 189 226 12 107 chr3 214121955 214122039 -13402539 + MIR SINE MIR 107 182 -80 519 148 0 0 chr3 214122182 214122270 -13402308 + (TG)n Simple_repeat Simple_repeat 1 88 0 2500 241 57 22 chr3 214122318 214123231 -13401347 - L1M4 LINE L1 -1050 5096 4152 513 171 0 0 chr3 214123248 214123336 -13401242 - AluJo SINE Alu -1 311 224 1055 169 0 28 chr3 214123336 214123514 -13401064 - AluJo SINE Alu -139 173 1 201 210 25 0 chr3 214123547 214123634 -13400944 + CT-rich Low_complexity Low_complexity 1 89 0 1141 174 106 78 chr3 214123687 214124008 -13400570 + MSTD LTR MaLR 9 338 -58 400 325 77 12 chr3 214124040 214124455 -13400123 - L1M4 LINE L1 -2336 3810 3369 1285 216 48 28 chr3 214124504 214125005 -13399573 - L1M4 LINE L1 -2854 3292 2782 242 277 11 21 chr3 214125670 214125764 -13398814 + L1PA15-16 LINE L1 1472 1564 -5285 * 2845 220 28 36 chr3 214125760 214126337 -13398241 + L1PA16 LINE L1 1347 1927 -4922 762 168 7 36 chr3 214126337 214126474 -13398104 + FLAM_C SINE Alu 1 133 0 2845 220 28 36 chr3 214126474 214127160 -13397418 + L1PA16 LINE L1 1927 2652 -4197 * 3249 120 11 0 chr3 214127150 214127682 -13396896 + L1PA10 LINE L1 4461 4998 -1148 * 29328 22 0 0 chr3 214127680 214132089 -13392489 + L1PA2 LINE L1 1746 6154 -1 5923 107 13 10 chr3 214132111 214133286 -13391292 + L1PA10 LINE L1 4984 6165 -3 11625 186 17 25 chr3 214133289 214135217 -13389361 + L1PA16 LINE L1 3198 5139 -1730 330 26 0 0 chr3 214135217 214135256 -13389322 + (CA)n Simple_repeat Simple_repeat 2 40 0 11625 186 17 25 chr3 214135256 214135747 -13388831 + L1PA16 LINE L1 5139 5632 -1237 2140 153 63 27 chr3 214135747 214136104 -13388474 - MSTB LTR MaLR 0 426 51 1979 146 13 10 chr3 214136104 214136406 -13388172 - AluSx SINE Alu -9 303 1 2140 153 63 27 chr3 214136406 214136459 -13388119 - MSTB LTR MaLR -375 51 1 11625 186 17 25 chr3 214136459 214137247 -13387331 + L1PA16 LINE L1 5632 6364 -505 607 164 0 10 chr3 214137247 214137351 -13387227 + U13 snRNA snRNA 1 103 -1 11625 186 17 25 chr3 214137351 214137830 -13386748 + L1PA16 LINE L1 6364 6845 -24 225 138 64 0 chr3 214137847 214137941 -13386637 + (TA)n Simple_repeat Simple_repeat 1 100 0 1090 246 26 14 chr3 214137965 214138310 -13386268 - L1M4 LINE L1 -3381 2765 2417 7612 21 0 0 chr3 214138314 214139782 -13384796 - L1PA2 LINE L1 0 6155 4713 21 0 0 0 chr3 214140268 214140289 -13384289 + AT_rich Low_complexity Low_complexity 1 21 0 239 286 0 0 chr3 214140623 214140686 -13383892 + MIR SINE MIR 81 143 -65 309 341 14 22 chr3 214141386 214141524 -13383054 - L3 LINE CR1 -1 1576 1440 1339 231 123 48 chr3 214141680 214142330 -13382248 - MER50 LTR ERV1 -22 712 14 670 229 83 16 chr3 214142795 214143048 -13381530 + LTR37B LTR ERV1 198 467 -1 228 297 66 11 chr3 214143049 214143140 -13381438 + MIR3 SINE MIR 95 190 -18 648 184 33 140 chr3 214144747 214145019 -13379559 - MER97c DNA MER1_type? -839 251 9 288 0 0 0 chr3 214145132 214145164 -13379414 + (TTTA)n Simple_repeat Simple_repeat 3 34 0 1144 169 6 0 chr3 214145175 214145352 -13379226 - AluSg/x SINE Alu -49 263 86 9456 211 10 24 chr3 214145461 214146412 -13378166 + L1PB1 LINE L1 2378 3341 -2810 307 47 0 0 chr3 214146412 214146455 -13378123 - MADE1 DNA Mariner -37 43 1 9456 211 10 24 chr3 214146455 214149285 -13375293 + L1PB1 LINE L1 3341 6142 -9 544 278 28 28 chr3 214150842 214151058 -13373520 + MER69 DNA AcHobo 109 324 -902 2043 95 4 0 chr3 214151120 214151393 -13373185 - AluSp SINE Alu -1 312 39 672 102 51 0 chr3 214151393 214151491 -13373087 - AluSp SINE Alu -210 103 1 483 213 93 7 chr3 214151493 214151643 -13372935 + MER69 DNA AcHobo 1458 1620 -906 688 79 26 18 chr3 214151657 214151771 -13372807 - MER4C LTR ERV1 -2 463 349 2049 188 85 32 chr3 214151913 214152440 -13372138 - LTR60 LTR ERV1 -31 555 1 2152 101 17 34 chr3 214152440 214152798 -13371780 - MER4C LTR ERV1 -113 352 1 2083 206 113 52 chr3 214152868 214153384 -13371194 + MER69 DNA AcHobo 1615 2098 -428 1953 144 77 68 chr3 214153384 214153828 -13370750 - MER83 LTR ERV1 0 448 1 2083 206 113 52 chr3 214153828 214153890 -13370688 + MER69 DNA AcHobo 2098 2155 -371 2034 134 0 44 chr3 214153890 214154210 -13370368 - AluSx SINE Alu -6 306 1 2083 206 113 52 chr3 214154210 214154478 -13370100 + MER69 DNA AcHobo 2155 2514 -12 1091 240 14 0 chr3 214154751 214154972 -13369606 + MER58A DNA MER1_type 1 224 0 478 225 143 68 chr3 214154992 214155272 -13369306 + MLT1G1 LTR MaLR 1 301 -294 409 214 61 11 chr3 214155370 214155518 -13369060 + MLT1H1 LTR MaLR 429 553 -2 403 360 29 29 chr3 214155522 214155694 -13368884 - MIR SINE MIR -70 192 21 1357 219 106 12 chr3 214155971 214156377 -13368201 - L1MB8 LINE L1 -6 6172 5729 391 333 33 0 chr3 214157018 214157138 -13367440 + L2 LINE L2 3134 3257 -15 401 354 55 17 chr3 214157166 214157347 -13367231 - MIR SINE MIR -52 210 23 331 291 12 0 chr3 214158774 214158860 -13365718 - MIR SINE MIR -6 256 170 276 213 12 12 chr3 214159033 214159113 -13365465 - MER116 DNA Mariner 0 80 1 236 295 0 16 chr3 214159267 214159328 -13365250 - L2 LINE L2 -212 3060 3001 318 308 6 26 chr3 214159389 214159545 -13365033 + L1ME2 LINE L1 56 208 -6188 1690 286 61 4 chr3 214159554 214160371 -13364207 + L1ME2 LINE L1 2819 3682 -2533 997 237 0 18 chr3 214160465 214160744 -13363834 + L1ME2 LINE L1 5695 5968 -265 1011 165 0 8 chr3 214160757 214161004 -13363574 + (TA)n Simple_repeat Simple_repeat 1 246 0 231 176 0 0 chr3 214161015 214161066 -13363512 - L1MC4 LINE L1 -1339 6703 6653 25 0 0 0 chr3 214161414 214161439 -13363139 + AT_rich Low_complexity Low_complexity 1 25 0 1369 200 23 19 chr3 214161451 214161761 -13362817 + AluJo SINE Alu 1 311 -1 449 259 157 12 chr3 214162475 214162641 -13361937 + MER20B DNA MER1_type 1 190 -593 327 233 44 11 chr3 214162711 214162801 -13361777 + LTR16C LTR ERVL 394 486 -5 740 237 30 26 chr3 214162996 214163300 -13361278 + MER20B DNA MER1_type 438 742 -41 189 0 0 0 chr3 214163340 214163361 -13361217 + (T)n Simple_repeat Simple_repeat 1 21 0 192 340 93 21 chr3 214163533 214163630 -13360948 - L3 LINE CR1 -353 1224 1121 1194 295 79 9 chr3 214163770 214164224 -13360354 + LTR16C LTR ERVL 1 486 -5 413 255 87 20 chr3 214164260 214164409 -13360169 + MIR3 SINE MIR 2 160 -48 223 302 0 0 chr3 214164540 214164593 -13359985 + L2 LINE L2 3210 3262 -10 494 285 90 25 chr3 214166076 214166408 -13358170 - MLT1G3 LTR MaLR -247 297 1 288 308 140 23 chr3 214166841 214167055 -13357523 - MIR SINE MIR -18 244 6 241 331 65 90 chr3 214167294 214167539 -13357039 + L2 LINE L2 3022 3260 -12 1939 276 63 86 chr3 214167542 214169303 -13355275 + L1MEc LINE L1 37 1837 -4378 2151 125 20 0 chr3 214169303 214169606 -13354972 + AluSx SINE Alu 1 309 -3 1939 276 63 86 chr3 214169606 214170129 -13354449 + L1MEc LINE L1 1837 2220 -3995 600 244 0 0 chr3 214170129 214170260 -13354318 + FLAM_C SINE Alu 2 132 -1 1939 276 63 86 chr3 214170260 214170513 -13354065 + L1MEc LINE L1 2220 2477 -3738 40654 34 25 10 chr3 214170529 214176387 -13348191 + L1PA3 LINE L1 2 5954 -201 244 311 56 56 chr3 214177320 214177481 -13347097 - MIR3 SINE MIR -35 173 13 352 230 155 50 chr3 214178047 214178208 -13346370 + L1MEc LINE L1 2398 2575 -3640 884 275 56 28 chr3 214178339 214178493 -13346085 + L1MEc LINE L1 2684 2832 -3383 2124 121 0 7 chr3 214178493 214178799 -13345779 + AluSc SINE Alu 1 304 -5 884 275 56 28 chr3 214178799 214179182 -13345396 + L1MEc LINE L1 2832 3236 -2979 263 288 162 40 chr3 214180003 214180225 -13344353 - MLT1K LTR MaLR -21 567 319 21 0 0 0 chr3 214180290 214180311 -13344267 + AT_rich Low_complexity Low_complexity 1 21 0 189 336 66 16 chr3 214181014 214181136 -13343442 + MIR3 SINE MIR 75 202 -6 26 30 0 0 chr3 214181293 214181326 -13343252 + AT_rich Low_complexity Low_complexity 1 33 0 342 273 64 36 chr3 214181330 214181440 -13343138 + MIR SINE MIR 35 147 -61 2297 113 0 0 chr3 214181479 214181780 -13342798 - AluSq SINE Alu -12 301 1 15073 88 23 21 chr3 214182026 214184366 -13340212 - HERVH LTR ERV1 -5370 2343 1 2533 88 108 7 chr3 214184368 214184775 -13339803 - LTR7 LTR ERV1 -2 448 1 5302 91 45 26 chr3 214184775 214185694 -13338884 + MER4A-int LTR ERV1 1560 2495 -4103 1308 173 58 0 chr3 214185694 214185937 -13338641 - LTR8 LTR ERV1 -434 257 1 3394 116 48 40 chr3 214185937 214186327 -13338251 + MER4A-int LTR ERV1 2737 3123 -3475 2161 108 7 3 chr3 214186327 214186622 -13337956 + AluSc SINE Alu 1 296 -13 3394 116 48 40 chr3 214186622 214187077 -13337501 + MER4A-int LTR ERV1 3123 3681 -2917 * 15563 93 61 20 chr3 214187076 214189730 -13334848 + MER4A-int LTR ERV1 3837 6598 0 491 116 53 21 chr3 214189731 214189826 -13334752 + MER4A LTR ERV1 1 98 -566 1604 144 9 31 chr3 214189826 214190179 -13334399 + MER4A LTR ERV1 261 664 0 206 261 34 68 chr3 214190179 214190205 -13334373 - MIR SINE MIR -173 89 64 3017 184 84 13 chr3 214190205 214190884 -13333694 - LTR8A LTR ERV1 0 727 1 206 261 34 68 chr3 214190884 214190945 -13333633 - MIR SINE MIR -198 64 5 * 293 231 27 116 chr3 214190890 214191037 -13333541 + MIR3 SINE MIR 53 186 -22 379 232 5 20 chr3 214191427 214191534 -13333044 - MIR3 SINE MIR 0 208 103 2109 144 126 5 chr3 214191755 214192137 -13332441 + MSTA LTR MaLR 1 428 0 190 302 101 31 chr3 214193805 214193934 -13330644 - MIR3 SINE MIR -38 170 33 1520 176 11 0 chr3 214194816 214195078 -13329500 - AluJo SINE Alu -12 300 36 1409 277 102 41 chr3 214195099 214195849 -13328729 + L2 LINE L2 2361 3156 -157 2269 99 0 13 chr3 214195849 214196152 -13328426 + AluSx SINE Alu 1 299 -13 1409 277 102 41 chr3 214196152 214196321 -13328257 + L2 LINE L2 3156 3313 0 267 311 14 0 chr3 214196336 214196410 -13328168 - MIR3 SINE MIR -49 159 85 1077 189 28 0 chr3 214196477 214196689 -13327889 + MER20 DNA MER1_type 2 219 0 2186 103 0 0 chr3 214196694 214196997 -13327581 + AluSx SINE Alu 1 303 0 204 305 73 12 chr3 214197304 214197386 -13327192 + L2 LINE L2 2995 3081 -191 460 291 8 17 chr3 214198237 214198354 -13326224 - MIR SINE MIR -63 145 30 411 370 37 16 chr3 214198376 214198565 -13326013 + MIR3 SINE MIR 15 207 -1 460 326 50 6 chr3 214198595 214198776 -13325802 - MIR SINE MIR -3 259 71 371 341 130 17 chr3 214198867 214199166 -13325412 - L3 LINE CR1 -125 1452 1120 341 253 148 4 chr3 214199331 214199568 -13325010 + L1ME1 LINE L1 3086 3356 -2790 2617 96 3 0 chr3 214199573 214199927 -13324651 + THE1A LTR MaLR 1 355 0 4149 69 9 0 chr3 214199927 214200494 -13324084 + THE1A-int LTR MaLR 1 572 -1008 1421 108 9 0 chr3 214200502 214200716 -13323862 + THE1A-int LTR MaLR 1365 1580 0 2649 101 0 0 chr3 214200716 214201071 -13323507 + THE1A LTR MaLR 1 355 0 4568 259 39 28 chr3 214201073 214202280 -13322298 + L1ME1 LINE L1 3359 4594 -1552 2098 129 7 19 chr3 214202280 214202590 -13321988 - AluSx SINE Alu -6 306 1 4568 259 39 28 chr3 214202590 214203203 -13321375 + L1ME1 LINE L1 4594 5199 -947 8363 164 20 11 chr3 214203206 214206360 -13318218 + L1PB2 LINE L1 1 2236 -4627 352 43 0 0 chr3 214206361 214206407 -13318171 + L1PB2 LINE L1 2570 2615 -4248 394 130 0 0 chr3 214206430 214206499 -13318079 + L1PB2 LINE L1 3246 3314 -3548 * 6276 213 7 18 chr3 214206497 214208067 -13316511 + L1PB2 LINE L1 4061 5613 -1249 4698 107 19 5 chr3 214208063 214208808 -13315770 + L1PB2 LINE L1 6113 6867 0 * 2241 242 59 33 chr3 214208801 214209757 -13314821 + L1ME1 LINE L1 5188 6162 -4 * 865 286 24 11 chr3 214210433 214210720 -13313858 + LTR16B LTR ERVL 172 462 -2 305 398 4 35 chr3 214211254 214211480 -13313098 + L2 LINE L2 2828 3046 -226 190 309 143 0 chr3 214212266 214212350 -13312228 - L2 LINE L2 -11 3302 3207 1662 165 69 0 chr3 214212460 214212751 -13311827 - AluJb SINE Alu -1 311 1 186 352 37 46 chr3 214213587 214213695 -13310883 + MIR3 SINE MIR 10 116 -92 1596 191 17 10 chr3 214213813 214214112 -13310466 + AluJo SINE Alu 5 305 -7 1774 136 66 3 chr3 214214122 214214409 -13310169 + AluSx SINE Alu 1 305 -7 1853 178 3 0 chr3 214214555 214214848 -13309730 + AluJb SINE Alu 1 294 -18 191 229 83 0 chr3 214214883 214214931 -13309647 + L2 LINE L2 3216 3267 -5 1468 154 111 27 chr3 214215141 214215473 -13309105 - THE1C LTR MaLR 0 375 16 2503 181 0 4 chr3 214215488 214215958 -13308620 - MER67C LTR ERV1 0 710 243 530 152 0 0 chr3 214215954 214216046 -13308532 - LTR49 LTR ERV1 -168 427 336 * 1252 177 0 0 chr3 214216046 214216264 -13308314 - AluJo SINE Alu 0 302 85 26 0 0 0 chr3 214216279 214216305 -13308273 + AT_rich Low_complexity Low_complexity 1 26 0 1658 161 29 40 chr3 214216311 214216660 -13307918 - LTR49 LTR ERV1 -250 345 1 270 137 59 0 chr3 214216793 214216844 -13307734 - MER81 DNA DNA 0 114 61 804 197 0 0 chr3 214217520 214217652 -13306926 - FLAM_C SINE Alu -1 132 1 1935 100 14 41 chr3 214218262 214218584 -13305994 - AluSp SINE Alu 0 314 1 973 312 98 14 chr3 214218949 214220051 -13304527 + L1MEd LINE L1 446 1654 -4656 315 283 16 43 chr3 214221019 214221206 -13303372 + L1MEd LINE L1 2108 2289 -3840 454 152 38 0 chr3 214221529 214221608 -13302970 - LTR49 LTR ERV1 0 595 514 2152 88 38 131 chr3 214221690 214222165 -13302413 - MER4A LTR ERV1 -233 431 1 * 2490 132 43 69 chr3 214222165 214222696 -13301882 - LTR49 LTR ERV1 -78 517 1 1677 171 79 23 chr3 214223131 214223177 -13301401 - LTR56 LTR ERV1 -5 432 390 1976 99 0 42 chr3 214223177 214223460 -13301118 + AluSg SINE Alu 35 305 -5 1677 171 79 23 chr3 214223460 214223858 -13300720 - LTR56 LTR ERV1 -47 390 1 21 82 0 0 chr3 214223916 214223965 -13300613 + AT_rich Low_complexity Low_complexity 1 49 0 223 340 90 0 chr3 214224014 214224114 -13300464 + L2 LINE L2 3200 3308 -5 391 336 21 21 chr3 214224220 214224363 -13300215 - L2 LINE L2 -5 3267 3125 1482 194 15 32 chr3 214225124 214225464 -13299114 - MLT1A1 LTR MaLR -11 354 21 241 29 114 0 chr3 214225464 214225499 -13299079 - MLT2A1 LTR ERVL 0 444 406 14803 94 12 7 chr3 214225499 214227662 -13296916 + L1P LINE L1 3 2178 -3968 2724 97 19 21 chr3 214227662 214228087 -13296491 - MLT2A1 LTR ERVL -20 424 1 193 275 175 12 chr3 214228569 214228649 -13295929 + L2 LINE L2 3172 3264 -8 1069 281 75 28 chr3 214230211 214230738 -13293840 - L2 LINE L2 -5 3308 2748 374 344 147 27 chr3 214230881 214231215 -13293363 + L2 LINE L2 2898 3271 -1 294 125 0 0 chr3 214231215 214231263 -13293315 + (GGGA)n Simple_repeat Simple_repeat 1 48 0 310 279 14 75 chr3 214231832 214231979 -13292599 + MER5B DNA MER1_type 8 145 -33 1259 180 10 0 chr3 214231979 214232179 -13292399 + AluJb SINE Alu 87 288 -24 356 245 38 0 chr3 214232700 214232806 -13291772 + L1MC4 LINE L1 7931 8040 -2 243 218 0 0 chr3 214232820 214232875 -13291703 + GA-rich Low_complexity Low_complexity 3 57 0 256 291 53 53 chr3 214232913 214233064 -13291514 + MIR3 SINE MIR 14 164 -44 344 269 104 65 chr3 214233066 214233326 -13291252 - MLT1F LTR MaLR 0 595 274 2454 63 7 0 chr3 214233765 214234064 -13290514 + AluY SINE Alu 1 301 -10 339 273 107 53 chr3 214234195 214234345 -13290233 - HAL1 LINE L1 -2 2505 2348 420 254 59 43 chr3 214234619 214234875 -13289703 - HAL1 LINE L1 -364 2143 1884 2990 117 21 2 chr3 214234954 214235433 -13289145 - LTR15 LTR ERV1 -5 488 1 2486 272 108 53 chr3 214235435 214237144 -13287434 - HAL1 LINE L1 -698 1809 6 684 327 13 9 chr3 214237345 214237571 -13287007 - MIR SINE MIR -6 256 30 2279 96 0 22 chr3 214237886 214238198 -13286380 - AluSc SINE Alu -4 305 1 422 289 89 24 chr3 214238430 214238890 -13285688 - L1MEc LINE L1 -2929 3286 2797 1701 187 23 23 chr3 214238996 214239306 -13285272 - AluJo SINE Alu -2 310 1 942 218 11 0 chr3 214239368 214239556 -13285022 + MER58A DNA MER1_type 1 190 -34 298 148 98 16 chr3 214239580 214239641 -13284937 + MER58A DNA MER1_type 159 224 0 507 223 51 5 chr3 214239746 214239970 -13284608 + MER3 DNA MER1_type 2 194 -15 180 200 0 25 chr3 214240706 214240746 -13283832 - MIR3 SINE MIR -48 160 122 807 113 0 15 chr3 214241092 214241225 -13283353 + L1PB1 LINE L1 6020 6150 -1 2127 95 0 11 chr3 214241627 214241939 -13282639 - AluSx SINE Alu 0 309 1 257 233 33 0 chr3 214242908 214242968 -13281610 - MIR SINE MIR -93 169 108 231 268 102 45 chr3 214243240 214243397 -13281181 - MIR3 SINE MIR -40 168 3 343 310 58 47 chr3 214243997 214244208 -13280370 + MIR SINE MIR 32 245 -17 221 282 0 42 chr3 214244227 214244298 -13280280 - L2 LINE L2 -19 3253 3186 399 313 205 29 chr3 214244320 214244627 -13279951 - L2 LINE L2 -2 3270 2910 1625 274 73 25 chr3 214245633 214245780 -13278798 - L1MEc LINE L1 -4838 1558 1420 216 97 0 0 chr3 214245780 214245811 -13278767 + (TG)n Simple_repeat Simple_repeat 2 32 0 1625 274 73 25 chr3 214245811 214246603 -13277975 - L1MEc LINE L1 -4976 1420 573 238 302 69 43 chr3 214247742 214247858 -13276720 - MIR SINE MIR -55 153 35 2492 53 3 3 chr3 214248705 214249006 -13275572 + AluY SINE Alu 1 301 -10 6602 138 23 19 chr3 214249529 214249567 -13275011 - Tigger3b DNA MER2_type -1813 1215 1179 2039 114 6 69 chr3 214249567 214249927 -13274651 - MER1B DNA MER1_type 0 337 1 6602 138 23 19 chr3 214249927 214251094 -13273484 - Tigger3b DNA MER2_type -1849 1179 5 22 35 0 0 chr3 214251443 214251472 -13273106 + AT_rich Low_complexity Low_complexity 1 29 0 285 128 0 0 chr3 214251648 214251695 -13272883 + MER66A LTR ERV1 290 336 -142 1925 208 77 88 chr3 214252063 214253012 -13271566 + L1MC5 LINE L1 6756 7694 -267 515 233 57 41 chr3 214253024 214253814 -13270764 + L1MC3 LINE L1 6763 7523 -328 2673 63 0 22 chr3 214253814 214254177 -13270401 + L1PA6 LINE L1 5792 6146 -8 515 233 57 41 chr3 214254177 214254330 -13270248 + L1MC3 LINE L1 7523 7672 -179 1404 61 0 6 chr3 214254569 214254750 -13269828 - L1PA5 LINE L1 -2 6152 5973 680 84 0 0 chr3 214254750 214254845 -13269733 + L1PA5 LINE L1 5870 5964 -190 22 0 0 0 chr3 214254845 214254867 -13269711 + AT_rich Low_complexity Low_complexity 1 22 0 234 0 0 0 chr3 214254929 214254955 -13269623 + (TAAA)n Simple_repeat Simple_repeat 2 27 0 408 239 8 39 chr3 214254986 214255116 -13269462 + L1ME1 LINE L1 6036 6161 -5 22 0 0 0 chr3 214255326 214255348 -13269230 + AT_rich Low_complexity Low_complexity 1 22 0 327 290 10 10 chr3 214255605 214255705 -13268873 + L1ME LINE L1 5726 5825 -296 1222 111 0 169 chr3 214255793 214256118 -13268460 + L1MA4 LINE L1 6020 6289 -11 465 211 0 0 chr3 214256408 214256510 -13268068 + AluJb SINE Alu 208 309 0 389 242 0 33 chr3 214256522 214256642 -13267936 + L1MC5 LINE L1 7786 7901 -60 2166 98 33 20 chr3 214256784 214257090 -13267488 - AluY SINE Alu -1 310 1 2157 65 0 4 chr3 214257557 214257817 -13266761 + AluY SINE Alu 40 298 -13 1510 171 13 45 chr3 214258296 214258605 -13265973 - AluJo SINE Alu -13 299 1 360 335 6 22 chr3 214259237 214259419 -13265159 + CT-rich Low_complexity Low_complexity 2 180 0 683 278 11 16 chr3 214260188 214260379 -13264199 + MIR SINE MIR 29 218 -44 2338 81 7 3 chr3 214260381 214260677 -13263901 + AluSg SINE Alu 1 297 -13 716 284 48 36 chr3 214260981 214261231 -13263347 + MIR SINE MIR 5 257 -5 317 366 40 56 chr3 214262873 214263176 -13261402 + L2 LINE L2 2887 3184 -88 290 211 193 26 chr3 214263209 214263323 -13261255 + MLT1J2 LTR MaLR 35 167 -283 265 273 105 14 chr3 214263403 214263546 -13261032 + MLT1J2 LTR MaLR 282 437 -13 829 167 0 0 chr3 214264362 214264500 -13260078 - MER41D LTR ERV1 -416 141 4 821 198 25 87 chr3 214264503 214264745 -13259833 + MLT1-int LTR MaLR 1094 1320 -51 22 0 0 0 chr3 214266315 214266337 -13258241 + AT_rich Low_complexity Low_complexity 1 22 0 898 158 0 0 chr3 214267157 214267290 -13257288 + AluJb SINE Alu 1 133 -179 239 77 0 26 chr3 214267837 214267876 -13256702 + (TTTG)n Simple_repeat Simple_repeat 2 39 0 2041 250 77 61 chr3 214268362 214269973 -13254605 + L1MDb LINE L1 782 2394 -4012 1994 219 75 7 chr3 214270013 214270601 -13253977 + L1MDb LINE L1 2373 3000 -3406 313 283 76 0 chr3 214270615 214270707 -13253871 + L2 LINE L2 3215 3313 0 22 80 0 0 chr3 214270713 214270763 -13253815 + AT_rich Low_complexity Low_complexity 1 50 0 22 56 0 0 chr3 214270891 214270927 -13253651 + AT_rich Low_complexity Low_complexity 1 36 0 556 314 77 16 chr3 214270943 214271382 -13253196 - L1ME4a LINE L1 -140 5981 5516 517 186 16 0 chr3 214272237 214272361 -13252217 + CT-rich Low_complexity Low_complexity 2 127 0 363 345 33 36 chr3 214273353 214273593 -13250985 + L2 LINE L2 2816 3050 -222 986 241 51 10 chr3 214274077 214274405 -13250173 - MER49 LTR ERV1 0 841 455 832 213 64 164 chr3 214274985 214275407 -13249171 - MLT1F1 LTR MaLR 0 567 188 1939 152 52 63 chr3 214275410 214275837 -13248741 - MSTB1 LTR MaLR -10 422 1 546 269 42 6 chr3 214275865 214276032 -13248546 - MLT1F1 LTR MaLR -367 175 3 282 217 0 0 chr3 214276260 214276329 -13248249 + (CA)n Simple_repeat Simple_repeat 2 70 0 275 238 38 38 chr3 214276489 214276569 -13248009 - MIR SINE MIR -69 139 60 2091 121 0 7 chr3 214276717 214277014 -13247564 + AluSq SINE Alu 1 295 -18 236 310 110 0 chr3 214277673 214277773 -13246805 + L3b LINE CR1 1210 1320 -263 607 266 173 31 chr3 214278031 214278257 -13246321 + MIR SINE MIR 2 259 -3 460 274 7 15 chr3 214278585 214278720 -13245858 - MIR3 SINE MIR -63 145 12 197 317 0 0 chr3 214279105 214279165 -13245413 + L2 LINE L2 3194 3253 -19 28 29 0 0 chr3 214280155 214280190 -13244388 + AT_rich Low_complexity Low_complexity 1 35 0 1672 198 6 9 chr3 214280201 214280539 -13244039 - MLT2C1 LTR ERVL -55 342 6 193 305 55 70 chr3 214280548 214280676 -13243902 - MIR SINE MIR -66 196 71 207 349 124 8 chr3 214280762 214280891 -13243687 - L2 LINE L2 -2 3270 3127 205 161 0 0 chr3 214280893 214280924 -13243654 + (CA)n Simple_repeat Simple_repeat 2 32 0 3415 147 32 14 chr3 214281430 214282021 -13242557 + Tigger1 DNA MER2_type 1 602 -1816 1913 98 0 18 chr3 214282021 214282295 -13242283 + AluY SINE Alu 1 269 -42 369 160 13 13 chr3 214282325 214282400 -13242178 - MLT1C LTR MaLR -392 75 1 285 327 157 13 chr3 214284021 214284180 -13240398 - L2 LINE L2 -5 3267 3086 663 209 82 41 chr3 214284320 214284516 -13240062 + MER3 DNA MER1_type 6 209 0 403 322 26 13 chr3 214284884 214285036 -13239542 + MIR3 SINE MIR 3 156 -52 408 188 18 125 chr3 214285551 214285590 -13238988 - L2 LINE L2 0 3313 3271 492 232 28 45 chr3 214285590 214285767 -13238811 - MER5B DNA MER1_type 0 178 5 408 188 18 125 chr3 214285767 214285839 -13238739 - L2 LINE L2 -42 3271 3214 242 242 91 85 chr3 214285876 214286041 -13238537 - MIR SINE MIR -90 172 7 480 292 68 64 chr3 214286268 214286403 -13238175 - L2 LINE L2 -19 3253 3115 1411 250 6 17 chr3 214286403 214286747 -13237831 - MER58B DNA MER1_type -1 340 1 480 292 68 64 chr3 214286747 214286847 -13237731 - L2 LINE L2 -157 3115 3017 538 326 56 0 chr3 214287095 214287310 -13237268 - MIR SINE MIR -6 256 30 2270 82 0 67 chr3 214287749 214288079 -13236499 - AluSg SINE Alu -2 308 1 22 0 0 0 chr3 214289148 214289170 -13235408 + AT_rich Low_complexity Low_complexity 1 22 0 227 259 12 0 chr3 214289907 214289992 -13234586 - L1ME LINE L1 -274 5847 5762 3294 126 5 36 chr3 214290115 214290670 -13233908 + L1PA14 LINE L1 5624 6161 0 264 200 0 0 chr3 214290763 214290818 -13233760 + (CATA)n Simple_repeat Simple_repeat 2 56 0 327 203 0 0 chr3 214290885 214290954 -13233624 + (TATATG)n Simple_repeat Simple_repeat 2 70 0 228 214 71 0 chr3 214291239 214291295 -13233283 + (CATATA)n Simple_repeat Simple_repeat 5 64 0 570 300 47 15 chr3 214291660 214292000 -13232578 + L1MC4a LINE L1 7064 7414 -394 286 287 16 61 chr3 214291986 214292233 -13232345 + L1MC5 LINE L1 7312 7547 -414 * 293 300 58 5 chr3 214292399 214292589 -13231989 + L1MC4 LINE L1 7816 8015 -27 574 302 69 27 chr3 214292752 214293378 -13231200 - L1M4 LINE L1 -3042 3104 2453 1580 173 15 23 chr3 214293390 214293732 -13230846 + L1MC3 LINE L1 7447 7785 0 2251 121 0 9 chr3 214293748 214294063 -13230515 + AluSx SINE Alu 1 312 0 354 248 14 76 chr3 214294123 214294333 -13230245 + L1MEd LINE L1 641 837 -5282 13207 188 16 8 chr3 214294441 214296245 -13228333 - L1PA13 LINE L1 -1 6162 4374 2404 105 22 19 chr3 214296245 214296608 -13227970 - THE1B LTR MaLR 0 364 1 13207 188 16 8 chr3 214296608 214298438 -13226140 - L1PA13 LINE L1 -1789 4374 2500 786 328 58 27 chr3 214299601 214300379 -13224199 + L2 LINE L2 2475 3275 -38 4565 75 0 2 chr3 214300382 214300942 -13223636 - L1PA8 LINE L1 -8 6164 5606 3746 102 6 0 chr3 214301032 214301595 -13222983 - L1PA8 LINE L1 -724 5407 4840 2113 139 60 35 chr3 214301710 214302076 -13222502 - THE1C LTR MaLR 0 375 1 2212 83 0 0 chr3 214302092 214302368 -13222210 + AluY SINE Alu 36 311 0 863 269 59 79 chr3 214302496 214302964 -13221614 + MLT1J1 LTR MaLR 3 421 -25 1939 115 0 4 chr3 214303064 214303324 -13221254 + AluSq SINE Alu 37 295 -18 500 237 115 6 chr3 214303329 214303485 -13221093 - HAL1 LINE L1 -1096 1411 1239 586 262 142 89 chr3 214303496 214304507 -13220071 - HAL1 LINE L1 -1334 1173 109 663 156 10 0 chr3 214304541 214304637 -13219941 - FLAM_C SINE Alu -18 125 29 277 288 86 74 chr3 214305611 214305868 -13218710 + MIR SINE MIR 2 261 -1 1788 186 58 9 chr3 214306029 214306356 -13218222 - MER61A LTR ERV1 0 343 1 643 331 94 28 chr3 214306423 214306783 -13217795 - L3 LINE CR1 -157 1420 1037 326 312 89 94 chr3 214307384 214307586 -13216992 + MIR3 SINE MIR 2 202 -6 238 278 42 79 chr3 214308282 214308380 -13216198 - MIR SINE MIR -97 111 11 605 279 100 22 chr3 214308544 214308813 -13215765 + HAL1 LINE L1 1473 1762 -745 242 301 60 60 chr3 214309395 214309594 -13214984 + HAL1 LINE L1 2292 2490 -17 645 58 0 0 chr3 214310438 214310450 -13214128 + (TTCC)n Simple_repeat Simple_repeat 1 98 0 645 58 0 0 chr3 214310450 214310536 -13214042 + (TTCC)n Simple_repeat Simple_repeat 3 88 0 250 328 22 70 chr3 214310622 214310893 -13213685 + L2 LINE L2 2830 3087 -185 214 267 0 0 chr3 214311029 214311074 -13213504 + L2 LINE L2 3259 3303 -10 1424 217 49 40 chr3 214312535 214312940 -13211638 + MLT1C LTR MaLR 7 415 -52 486 268 42 47 chr3 214314463 214314676 -13209902 - MIR SINE MIR -11 251 40 499 281 76 23 chr3 214315045 214315216 -13209362 + MIR3 SINE MIR 5 184 -24 234 319 147 12 chr3 214315680 214315843 -13208735 - MIR SINE MIR -56 206 22 2781 162 26 15 chr3 214315934 214316396 -13208182 + MLT1C LTR MaLR 1 467 0 419 345 201 0 chr3 214316904 214317113 -13207465 - L2 LINE L2 -8 3264 3014 212 231 92 31 chr3 214317419 214317484 -13207094 - MIR SINE MIR -110 152 84 354 269 57 14 chr3 214317487 214317628 -13206950 + MLT1J LTR MaLR 2 148 -363 2124 121 3 22 chr3 214317743 214318058 -13206520 - L1PB1 LINE L1 -18 6133 5825 9784 154 51 17 chr3 214318063 214321648 -13202930 - L1PBa LINE L1 -1914 4948 1093 4079 227 54 5 chr3 214321651 214322643 -13201935 - L1PBa LINE L1 -5817 1046 6 335 275 76 64 chr3 214322692 214322928 -13201650 + MLT1J LTR MaLR 273 511 0 315 314 58 0 chr3 214323112 214323233 -13201345 + MIR3 SINE MIR 48 175 -33 432 255 14 64 chr3 214325865 214326006 -13198572 + MIR SINE MIR 129 262 0 225 159 0 0 chr3 214326669 214326713 -13197865 + A-rich Low_complexity Low_complexity 1 44 0 209 33 33 0 chr3 214326891 214326921 -13197657 + (CAAA)n Simple_repeat Simple_repeat 2 32 0 327 331 41 0 chr3 214327572 214327693 -13196885 - L3 LINE CR1 -87 1490 1365 278 302 23 0 chr3 214327882 214327968 -13196610 - L2 LINE L2 -4 3309 3222 202 224 17 69 chr3 214328382 214328440 -13196138 - L3 LINE CR1 -6 1571 1517 223 247 90 56 chr3 214330003 214330092 -13194486 + MIR SINE MIR 110 201 -61 233 231 19 19 chr3 214330160 214330212 -13194366 + L2 LINE L2 3114 3165 -107 228 67 0 0 chr3 214330548 214330578 -13194000 + (TG)n Simple_repeat Simple_repeat 1 30 0 252 260 220 13 chr3 214331069 214331219 -13193359 + MIR SINE MIR 71 251 -11 339 319 99 87 chr3 214331953 214332607 -13191971 + L2 LINE L2 2552 3242 -30 294 319 42 42 chr3 214332613 214332779 -13191799 + MER5B DNA MER1_type 7 172 -6 206 255 78 0 chr3 214333057 214333108 -13191470 + L2 LINE L2 3210 3264 -8 497 282 82 24 chr3 214333129 214333299 -13191279 + MIR3 SINE MIR 21 200 -8 205 366 122 0 chr3 214334253 214334417 -13190161 + L3 LINE CR1 1393 1576 -1 214 348 28 21 chr3 214334720 214334861 -13189717 + MIR3 SINE MIR 32 173 -35 717 298 175 15 chr3 214335924 214336250 -13188328 + L2 LINE L2 2935 3312 -1 338 294 123 0 chr3 214336269 214336415 -13188163 - MIR SINE MIR -78 184 21 276 291 126 29 chr3 214337228 214337331 -13187247 - MIR SINE MIR -116 146 34 210 179 0 26 chr3 214337561 214337600 -13186978 + MIR SINE MIR 18 55 -207 188 323 43 32 chr3 214337636 214337729 -13186849 + MIR SINE MIR 157 250 -12 1157 153 16 11 chr3 214338053 214338243 -13186335 + MLT1A1 LTR MaLR 10 200 -165 3356 159 71 125 chr3 214338243 214338264 -13186314 + MER21A LTR ERV1 1 22 -909 327 49 0 0 chr3 214338264 214338305 -13186273 + (TG)n Simple_repeat Simple_repeat 2 42 0 3356 159 71 125 chr3 214338305 214339037 -13185541 + MER21A LTR ERV1 22 792 -139 2217 121 0 0 chr3 214339037 214339342 -13185236 + AluSx SINE Alu 6 310 -2 3356 159 71 125 chr3 214339342 214339417 -13185161 + MER21A LTR ERV1 792 775 -156 195 42 0 0 chr3 214339417 214339441 -13185137 + (AATTG)n Simple_repeat Simple_repeat 3 26 0 3356 159 71 125 chr3 214339441 214339567 -13185011 + MER21A LTR ERV1 774 905 -26 968 167 6 6 chr3 214339593 214339755 -13184823 + MLT1A1 LTR MaLR 204 365 0 211 305 0 17 chr3 214339802 214339861 -13184717 - MIR SINE MIR -201 61 4 346 216 60 69 chr3 214340010 214340126 -13184452 - MIR3 SINE MIR -12 196 82 2112 115 16 13 chr3 214340444 214340756 -13183822 + AluSq SINE Alu 1 313 0 581 315 105 49 chr3 214341075 214341485 -13183093 + L2 LINE L2 2835 3267 -46 242 344 56 33 chr3 214342047 214342227 -13182351 - MIR SINE MIR -3 259 76 358 280 64 16 chr3 214343225 214343350 -13181228 - LTR16A1 LTR ERVL -3 454 324 322 234 103 9 chr3 214343464 214343571 -13181007 - LTR16A1 LTR ERVL -338 119 3 236 329 175 46 chr3 214344141 214344421 -13180157 + L2 LINE L2 2956 3271 -1 656 283 63 15 chr3 214344539 214344663 -13179915 - MIR SINE MIR -8 254 115 4259 111 13 79 chr3 214344663 214345374 -13179204 + MER4A LTR ERV1 1 664 0 656 283 63 15 chr3 214345374 214345454 -13179124 - MIR SINE MIR -147 115 40 393 388 8 0 chr3 214345808 214345937 -13178641 + L2 LINE L2 3143 3272 0 282 280 0 13 chr3 214345971 214346046 -13178532 + MER5A DNA MER1_type 7 80 -109 2458 150 89 0 chr3 214346260 214346653 -13177925 - MSTA LTR MaLR 0 428 1 9420 165 28 46 chr3 214346653 214348289 -13176289 - MSTA-int LTR MaLR 0 1651 45 1856 156 7 17 chr3 214348289 214348591 -13175987 - AluJb SINE Alu -13 299 1 9420 165 28 46 chr3 214348591 214348636 -13175942 - MSTA-int LTR MaLR -1606 45 1 2158 162 94 10 chr3 214348636 214349031 -13175547 - MSTA LTR MaLR 0 428 1 285 195 168 18 chr3 214349750 214349863 -13174715 - MIR SINE MIR -13 249 120 1661 206 45 28 chr3 214351550 214351909 -13172669 - MLT1A1 LTR MaLR 0 365 1 193 384 30 23 chr3 214352121 214352254 -13172324 + L2 LINE L2 2714 2847 -467 701 268 65 19 chr3 214352270 214352497 -13172081 - MIR SINE MIR -9 253 20 276 370 21 82 chr3 214352565 214352846 -13171732 + L2 LINE L2 2928 3191 -81 270 255 85 68 chr3 214352902 214353116 -13171462 - MIR3 SINE MIR -33 229 10 347 279 108 9 chr3 214353204 214353315 -13171263 - MIR SINE MIR 0 262 141 1535 228 40 50 chr3 214353317 214353786 -13170792 - MER31B LTR ERV1 0 543 1 203 170 57 38 chr3 214353789 214353842 -13170736 - MIR SINE MIR -117 145 92 240 276 0 81 chr3 214353844 214353931 -13170647 - L1M2b LINE L1 -6209 1000 921 181 250 0 0 chr3 214354020 214354056 -13170522 + MIR SINE MIR 221 256 -6 272 230 70 0 chr3 214354882 214354982 -13169596 + (TAGA)n Simple_repeat Simple_repeat 4 110 0 204 191 18 27 chr3 214354994 214355104 -13169474 + (CAGAGA)n Simple_repeat Simple_repeat 2 110 0 820 273 18 13 chr3 214355174 214355401 -13169177 + MIR SINE MIR 14 241 -21 560 288 26 31 chr3 214355922 214356113 -13168465 + MIR3 SINE MIR 16 205 -3 309 340 68 0 chr3 214356822 214356969 -13167609 - L3 LINE CR1 -1 1576 1420 186 43 0 0 chr3 214358025 214358048 -13166530 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 3152 54 5 0 chr3 214358048 214358417 -13166161 - L1PA7 LINE L1 0 6154 5784 364 177 0 0 chr3 214358783 214358845 -13165733 - L1MA8 LINE L1 -321 5970 5909 246 150 0 0 chr3 214358858 214358898 -13165680 + MIR SINE MIR 153 192 -70 262 264 0 0 chr3 214359442 214359495 -13165083 + polypurine Low_complexity Low_complexity 2 54 0 1122 72 26 0 chr3 214360672 214360824 -13163754 + AluSq SINE Alu 1 156 -157 676 109 0 0 chr3 214360824 214360916 -13163662 + AluSg/x SINE Alu 214 305 -5 345 240 40 30 chr3 214361015 214361115 -13163463 - MLT1D LTR MaLR -2 503 403 1541 196 101 35 chr3 214361137 214361454 -13163124 - MLT1D LTR MaLR -81 424 74 2071 125 54 41 chr3 214361454 214361822 -13162756 - THE1C LTR MaLR 0 375 3 1541 196 101 35 chr3 214361822 214361902 -13162676 - MLT1D LTR MaLR -431 74 1 201 195 0 0 chr3 214363429 214363470 -13161108 + T-rich Low_complexity Low_complexity 1 41 0 262 227 173 0 chr3 214363743 214363818 -13160760 - MIR3 SINE MIR -7 201 114 246 352 143 9 chr3 214364070 214364175 -13160403 + MIR SINE MIR 23 141 -67 524 348 87 27 chr3 214364209 214365053 -13159525 + L2 LINE L2 1986 2879 -435 254 357 58 58 chr3 214365534 214365859 -13158719 + L2 LINE L2 2948 3272 0 242 371 0 10 chr3 214367472 214367569 -13157009 + L3 LINE CR1 1428 1523 -54 420 228 110 0 chr3 214368345 214368472 -13156106 + L1ME2 LINE L1 5727 5867 -297 780 217 13 0 chr3 214368790 214368947 -13155631 - MER5A DNA MER1_type -1 188 30 21 0 0 0 chr3 214369097 214369118 -13155460 + AT_rich Low_complexity Low_complexity 1 21 0 1683 193 0 13 chr3 214369370 214369671 -13154907 - AluJb SINE Alu -15 297 1 267 342 105 0 chr3 214370185 214370299 -13154279 - L2 LINE L2 -1 3271 3146 1394 219 100 61 chr3 214370513 214370975 -13153603 + L1MCb LINE L1 3 482 -5563 788 334 47 58 chr3 214370991 214371548 -13153030 + ERVL LTR ERVL 1160 1710 -4054 779 65 59 0 chr3 214371554 214371724 -13152854 + (TA)n Simple_repeat Simple_repeat 1 180 0 46 0 0 0 chr3 214371724 214371770 -13152808 + AT_rich Low_complexity Low_complexity 1 46 0 5728 296 34 22 chr3 214371770 214371789 -13152789 + ERVL LTR ERVL 1658 1675 -4089 835 73 28 22 chr3 214371789 214371968 -13152610 + (TA)n Simple_repeat Simple_repeat 1 180 0 5728 296 34 22 chr3 214371968 214373139 -13151439 + ERVL LTR ERVL 1675 2960 -2804 3360 136 2 29 chr3 214373139 214373358 -13151220 - L1PA15 LINE L1 -5 6160 5937 2226 104 3 0 chr3 214373358 214373647 -13150931 - AluY SINE Alu -21 290 1 3360 136 2 29 chr3 214373647 214373948 -13150630 - L1PA15 LINE L1 -228 5937 5654 5728 296 34 22 chr3 214373948 214374750 -13149828 + ERVL LTR ERVL 2960 3751 -2013 417 395 14 25 chr3 214374757 214375043 -13149535 + L3 LINE CR1 987 1269 -308 297 260 14 96 chr3 214375049 214375239 -13149339 + MIR SINE MIR 40 212 -50 292 305 132 11 chr3 214375820 214375994 -13148584 - MLT1K LTR MaLR -360 228 34 200 143 29 0 chr3 214377072 214377107 -13147471 + (TTTA)n Simple_repeat Simple_repeat 1 36 0 456 244 72 25 chr3 214377359 214377500 -13147078 + MIR SINE MIR 7 145 -63 190 359 82 35 chr3 214378300 214378470 -13146108 + MIR3 SINE MIR 3 180 -28 271 263 125 13 chr3 214379329 214379481 -13145097 - MIR SINE MIR -2 260 92 241 293 24 12 chr3 214379795 214379877 -13144701 - MIR3 SINE MIR -20 188 106 2081 80 0 14 chr3 214379979 214380254 -13144324 - AluY SINE Alu -2 309 39 459 35 0 0 chr3 214382316 214382373 -13142205 + (CA)n Simple_repeat Simple_repeat 2 58 0 211 239 22 0 chr3 214385327 214385373 -13139205 + CT-rich Low_complexity Low_complexity 3 49 0 301 259 0 0 chr3 214385851 214385932 -13138646 - MIR SINE MIR -114 148 68 557 258 145 0 chr3 214386229 214386388 -13138190 + MIR3 SINE MIR 16 197 -11 184 293 0 0 chr3 214386676 214386717 -13137861 - L2 LINE L2 -56 3257 3217 662 281 119 32 chr3 214386788 214387195 -13137383 - L2 LINE L2 -254 3059 2621 328 329 13 26 chr3 214387417 214387569 -13137009 - L2 LINE L2 -700 2614 2465 189 259 0 37 chr3 214387754 214387808 -13136770 + MIR SINE MIR 16 67 -141 1720 103 33 44 chr3 214389104 214389376 -13135202 + AluSq SINE Alu 39 307 -6 183 343 39 20 chr3 214389384 214389486 -13135092 + L2 LINE L2 3202 3305 -8 509 265 60 13 chr3 214390523 214390674 -13133904 - MER5B DNA MER1_type -2 176 19 251 279 18 42 chr3 214390729 214390894 -13133684 + CT-rich Low_complexity Low_complexity 2 162 0 330 306 9 18 chr3 214391060 214391171 -13133407 - MIR3 SINE MIR -34 174 65 2109 105 40 3 chr3 214391197 214391493 -13133085 - AluSc SINE Alu -2 307 1 202 314 29 0 chr3 214392143 214392213 -13132365 - MIR3 SINE MIR 0 208 137 621 216 102 57 chr3 214392743 214392988 -13131590 + MER112 DNA MER1_type 1 256 0 1297 235 129 46 chr3 214393224 214393680 -13130898 + MLT1D LTR MaLR 5 498 -7 264 324 0 0 chr3 214394058 214394126 -13130452 - MIR SINE MIR -73 135 68 2247 108 0 3 chr3 214394671 214394977 -13129601 + AluSq SINE Alu 1 305 -8 2325 226 32 15 chr3 214395923 214396459 -13128119 + MER90 LTR ERV1 70 614 0 354 332 70 34 chr3 214397092 214397390 -13127188 - HAL1b LINE L1 -648 700 392 246 32 0 0 chr3 214397414 214397445 -13127133 + (CA)n Simple_repeat Simple_repeat 2 32 0 374 289 75 79 chr3 214397875 214398478 -13126100 + L1MC4 LINE L1 7312 8015 -27 791 302 69 27 chr3 214398641 214399267 -13125311 - L1M4 LINE L1 -3042 3104 2453 1775 172 12 23 chr3 214399279 214399622 -13124956 + L1MC3 LINE L1 7447 7785 0 2041 126 0 20 chr3 214399638 214399917 -13124661 + AluSx SINE Alu 1 275 -37 198 0 0 0 chr3 214399917 214399939 -13124639 + (C)n Simple_repeat Simple_repeat 1 22 0 2041 126 0 20 chr3 214399939 214399961 -13124617 + AluSx SINE Alu 275 296 -16 345 240 40 30 chr3 214400158 214400258 -13124320 - MLT1D LTR MaLR -2 503 403 1541 196 101 35 chr3 214400280 214400597 -13123981 - MLT1D LTR MaLR -81 424 74 2050 128 54 41 chr3 214400597 214400965 -13123613 - THE1C LTR MaLR 0 375 3 1541 196 101 35 chr3 214400965 214401045 -13123533 - MLT1D LTR MaLR -431 74 1 1566 192 0 35 chr3 214401888 214402200 -13122378 + AluJb SINE Alu 1 301 -11 2385 58 0 0 chr3 214402218 214402493 -13122085 + AluY SINE Alu 29 303 -8 314 129 12 119 chr3 214403203 214403303 -13121275 - MER69 DNA AcHobo -1 2525 2436 501 261 106 0 chr3 214403847 214404008 -13120570 - MLT1J LTR MaLR 0 511 334 848 266 69 86 chr3 214404153 214404654 -13119924 + MLT1G LTR MaLR 30 555 0 896 204 54 27 chr3 214404683 214404869 -13119709 - MLT1J LTR MaLR -320 191 1 3810 165 92 84 chr3 214405004 214406066 -13118512 + MER11C LTR ERVK 1 1071 0 4330 185 40 33 chr3 214406464 214406778 -13117800 + MER21B LTR ERV1 3 313 -550 2069 147 3 0 chr3 214406778 214407077 -13117501 + AluSg SINE Alu 1 300 -10 4330 185 40 33 chr3 214407077 214407591 -13116987 + MER21B LTR ERV1 313 837 -26 246 32 0 0 chr3 214408240 214408271 -13116307 + (TG)n Simple_repeat Simple_repeat 2 32 0 340 332 70 34 chr3 214408295 214408593 -13115985 + HAL1b LINE L1 392 700 -648 2391 220 32 15 chr3 214409226 214409762 -13114816 - MER90 LTR ERV1 0 614 70 1815 154 17 3 chr3 214410777 214411076 -13113502 - AluSc SINE Alu -6 303 1 1838 167 0 7 chr3 214411743 214412036 -13112542 - AluJb SINE Alu -16 296 6 2064 134 0 0 chr3 214412285 214412577 -13112001 + AluJb SINE Alu 5 296 -16 208 181 149 21 chr3 214412676 214412770 -13111808 + MIR SINE MIR 118 223 -39 21 0 0 0 chr3 214412951 214412972 -13111606 + AT_rich Low_complexity Low_complexity 1 21 0 229 330 43 38 chr3 214412977 214413186 -13111392 - L2 LINE L2 -120 3152 2943 717 273 40 32 chr3 214413218 214413467 -13111111 + MIR SINE MIR 2 252 -10 594 179 9 0 chr3 214414263 214414512 -13110066 + HSAT4 Satellite centromeric 1 251 -5 207 337 83 49 chr3 214414591 214414796 -13109782 - L2 LINE L2 -1473 1841 1630 16039 57 70 6 chr3 214415761 214417962 -13106616 - L1P LINE L1 -3604 2542 202 1940 123 0 14 chr3 214418070 214418354 -13106224 + AluSq SINE Alu 14 293 -20 3830 243 65 31 chr3 214418365 214419785 -13104793 + L1M4 LINE L1 3702 5169 -977 2211 114 3 3 chr3 214420635 214420932 -13103646 - AluSc SINE Alu -12 297 1 404 327 124 15 chr3 214422018 214422357 -13102221 + L2 LINE L2 2897 3272 0 406 309 0 9 chr3 214422950 214423060 -13101518 + L2 LINE L2 3155 3263 -9 834 240 8 50 chr3 214423200 214423442 -13101136 + L1ME3A LINE L1 5934 6165 -5 227 204 0 37 chr3 214423574 214423628 -13100950 - Tigger4(Zombi) DNA MER2_type -1212 1519 1468 573 231 45 30 chr3 214423754 214423953 -13100625 - AluSg/x SINE Alu -18 291 90 6053 131 6 8 chr3 214425209 214426267 -13098311 - L1P LINE L1 -1022 5124 4069 294 306 33 50 chr3 214426621 214426801 -13097777 - MER115 DNA AcHobo -421 272 96 372 271 31 23 chr3 214426881 214427031 -13097547 - MIR3 SINE MIR -2 206 55 187 231 0 0 chr3 214427024 214427063 -13097515 + L2 LINE L2 3221 3259 -13 * 431 241 86 12 chr3 214427205 214427367 -13097211 - MIR3 SINE MIR -17 191 18 594 179 9 0 chr3 214430305 214430554 -13094024 + HSAT4 Satellite centromeric 1 251 -5 207 337 83 49 chr3 214430633 214430838 -13093740 - L2 LINE L2 -1473 1841 1630 1868 107 0 4 chr3 214432088 214432330 -13092248 + AluSx SINE Alu 9 249 -63 761 160 15 8 chr3 214432366 214432497 -13092081 + FRAM SINE Alu 37 168 -8 1415 135 0 0 chr3 214432634 214432827 -13091751 - AluSg/x SINE Alu -29 281 89 697 191 15 0 chr3 214432841 214432972 -13091606 - FLAM_C SINE Alu 0 133 1 1090 175 31 0 chr3 214433213 214433407 -13091171 + MER3 DNA MER1_type 10 209 0 340 155 17 0 chr3 214433364 214433422 -13091156 - MER3 DNA MER1_type -119 90 32 * 351 301 35 28 chr3 214433812 214433955 -13090623 - MIR3 SINE MIR -45 163 20 208 198 128 35 chr3 214434817 214434903 -13089675 + MIR3 SINE MIR 109 202 -6 186 214 0 0 chr3 214434974 214435016 -13089562 + L2 LINE L2 3211 3252 -20 486 0 0 0 chr3 214435206 214435260 -13089318 + (CA)n Simple_repeat Simple_repeat 1 54 0 367 252 42 28 chr3 214436141 214436284 -13088294 - MIR3 SINE MIR -2 206 62 222 294 0 0 chr3 214436281 214436332 -13088246 + L2 LINE L2 3221 3271 -1 * 558 296 12 31 chr3 214436588 214436750 -13087828 - MER115 DNA AcHobo -439 254 96 379 263 31 23 chr3 214436830 214436980 -13087598 - MIR3 SINE MIR -2 206 55 207 205 0 0 chr3 214436973 214437012 -13087566 + L2 LINE L2 3221 3259 -13 * 431 241 86 12 chr3 214437154 214437316 -13087262 - MIR3 SINE MIR -17 191 18 2180 120 7 0 chr3 214440651 214440950 -13083628 - AluSg SINE Alu -9 301 1 435 134 0 103 chr3 214440978 214441075 -13083503 + L1MC3 LINE L1 6686 6772 -1013 944 261 60 13 chr3 214441075 214441436 -13083142 - MLT1G3 LTR MaLR -207 330 1 205 385 49 7 chr3 214441642 214441785 -13082793 - L2 LINE L2 -457 2857 2709 910 275 0 19 chr3 214442733 214442995 -13081583 - MIR SINE MIR 0 262 6 2053 127 3 3 chr3 214443469 214443753 -13080825 + AluSg SINE Alu 18 301 -9 2913 194 53 55 chr3 214443756 214444536 -13080042 + L1MC3 LINE L1 7000 7777 -8 492 145 7 14 chr3 214444547 214444685 -13079893 + (TA)n Simple_repeat Simple_repeat 2 138 0 247 236 97 0 chr3 214445272 214445344 -13079234 - MIR SINE MIR -67 141 63 498 250 88 96 chr3 214445673 214446205 -13078373 + L1ME4a LINE L1 5550 6077 -44 401 36 18 0 chr3 214446213 214446268 -13078310 + (TCTA)n Simple_repeat Simple_repeat 3 58 0 201 195 0 0 chr3 214446866 214446907 -13077671 + A-rich Low_complexity Low_complexity 1 41 0 * 495 145 0 0 chr3 214446898 214446981 -13077597 + (GGAGA)n Simple_repeat Simple_repeat 5 87 0 301 288 30 45 chr3 214447090 214447222 -13077356 - L2 LINE L2 0 3272 3143 183 379 11 0 chr3 214447215 214447310 -13077268 - MIR SINE MIR -76 132 37 * 899 169 0 7 chr3 214449546 214449688 -13074890 + FRAM SINE Alu 9 149 -27 255 125 0 0 chr3 214450242 214450282 -13074296 + (T)n Simple_repeat Simple_repeat 1 40 0 1007 310 113 45 chr3 214450637 214450831 -13073747 - L2 LINE L2 -23 3290 3111 2175 132 0 0 chr3 214450831 214451134 -13073444 + AluSx SINE Alu 1 303 -9 1007 310 113 45 chr3 214451134 214451489 -13073089 - L2 LINE L2 -202 3111 2781 2151 121 3 3 chr3 214451489 214451796 -13072782 + AluSp SINE Alu 3 309 -4 1007 310 113 45 chr3 214451796 214452090 -13072488 - L2 LINE L2 -532 2781 2508 263 28 28 0 chr3 214452090 214452126 -13072452 + (CAAA)n Simple_repeat Simple_repeat 2 38 0 1007 310 113 45 chr3 214452126 214452304 -13072274 - L2 LINE L2 -805 2508 2196 819 228 52 14 chr3 214453577 214453788 -13070790 - MIR SINE MIR -42 220 2 186 338 120 14 chr3 214453964 214454106 -13070472 - MIR SINE MIR -74 188 32 241 282 121 16 chr3 214454116 214454240 -13070338 - MIR SINE MIR -3 259 123 199 403 0 0 chr3 214454511 214454588 -13069990 + L3 LINE CR1 943 1019 -558 2684 10 3 0 chr3 214456302 214456620 -13067958 - AluYb8 SINE Alu 0 319 1 2134 114 10 10 chr3 214456745 214457044 -13067534 - AluSx SINE Alu -13 299 1 198 0 0 0 chr3 214457060 214457082 -13067496 + (A)n Simple_repeat Simple_repeat 1 22 0 477 264 81 11 chr3 214457430 214457604 -13066974 + MIR SINE MIR 7 192 -70 356 273 0 45 chr3 214457878 214458010 -13066568 - MIR SINE MIR -41 221 96 2361 255 95 22 chr3 214458381 214458447 -13066131 - L2 LINE L2 -97 3216 3156 1412 152 31 59 chr3 214458447 214458767 -13065811 - AluJb SINE Alu 0 313 2 2361 255 95 22 chr3 214458767 214459806 -13064772 - L2 LINE L2 -157 3156 2044 284 313 67 7 chr3 214460395 214460545 -13064033 - MIR3 SINE MIR -6 202 44 251 252 73 57 chr3 214460590 214460713 -13063865 - MIR SINE MIR -21 241 117 636 252 101 37 chr3 214460921 214461139 -13063439 + MIR SINE MIR 21 252 -10 444 184 46 0 chr3 214461293 214461380 -13063198 - MLT2E LTR ERVL 0 628 538 28 48 0 0 chr3 214461620 214461662 -13062916 + AT_rich Low_complexity Low_complexity 1 42 0 305 289 11 0 chr3 214461662 214461752 -13062826 + L1MC4 LINE L1 6613 6703 -1339 458 256 58 0 chr3 214461771 214461927 -13062651 + L1ME4a LINE L1 5935 6099 -22 2092 131 3 7 chr3 214461929 214462246 -13062332 + AluSq SINE Alu 1 313 0 239 342 94 0 chr3 214462398 214462547 -13062031 - MIR3 SINE MIR -8 200 38 230 247 55 0 chr3 214463334 214463407 -13061171 + MIR SINE MIR 75 151 -111 24 32 0 0 chr3 214463475 214463506 -13061072 + AT_rich Low_complexity Low_complexity 1 31 0 281 348 17 8 chr3 214465274 214465392 -13059186 - L3 LINE CR1 -82 1495 1377 256 357 20 56 chr3 214465873 214466069 -13058509 - MIR3 SINE MIR -1 207 19 367 296 151 16 chr3 214466339 214466525 -13058053 - MIR SINE MIR -42 220 10 387 282 23 8 chr3 214467482 214467613 -13056965 - MIR SINE MIR 0 262 130 186 250 42 0 chr3 214468308 214468356 -13056222 - L2 LINE L2 0 3272 3223 363 255 87 46 chr3 214468371 214468567 -13056011 + MIR SINE MIR 9 212 -50 1589 187 56 0 chr3 214468676 214468794 -13055784 + AluJo SINE Alu 1 111 -207 492 62 0 0 chr3 214468794 214468858 -13055720 + (TA)n Simple_repeat Simple_repeat 2 65 0 1589 187 56 0 chr3 214468858 214469042 -13055536 + AluJo SINE Alu 111 318 0 218 319 67 17 chr3 214469602 214469721 -13054857 - MIR SINE MIR -63 145 21 225 108 0 0 chr3 214470662 214470699 -13053879 + (CA)n Simple_repeat Simple_repeat 2 38 0 405 269 175 0 chr3 214470832 214471003 -13053575 + MIR SINE MIR 57 257 -5 183 121 0 30 chr3 214470976 214471009 -13053569 + L2 LINE L2 3235 3266 -6 * 330 354 56 12 chr3 214471572 214471733 -13052845 + MIR SINE MIR 25 192 -70 319 302 66 55 chr3 214471993 214472175 -13052403 + MIR3 SINE MIR 12 195 -13 249 325 12 0 chr3 214472589 214472669 -13051909 + GA-rich Low_complexity Low_complexity 1 81 0 205 159 23 0 chr3 214472764 214472808 -13051770 - MIR SINE MIR -69 139 95 212 227 0 0 chr3 214472946 214472990 -13051588 + L2 LINE L2 3227 3270 -2 2284 109 0 3 chr3 214473009 214473303 -13051275 - AluSx SINE Alu -19 293 1 279 226 30 120 chr3 214473565 214473698 -13050880 - MIR SINE MIR -121 141 21 22 35 0 0 chr3 214474176 214474205 -13050373 + AT_rich Low_complexity Low_complexity 1 29 0 631 261 151 74 chr3 214474294 214474644 -13049934 - L2 LINE L2 -4 3309 2987 2620 42 0 6 chr3 214474644 214474957 -13049621 - AluY SINE Alu 0 311 1 631 261 151 74 chr3 214474957 214475266 -13049312 - L2 LINE L2 -326 2987 2574 1279 180 129 18 chr3 214475512 214475790 -13048788 - AluJo SINE Alu -3 309 1 207 313 81 30 chr3 214476014 214476113 -13048465 - MIR SINE MIR -118 144 41 1580 139 158 16 chr3 214476154 214476470 -13048108 + MER46B DNA MER2_type 1 236 0 2161 114 0 25 chr3 214476824 214477141 -13047437 - AluSc SINE Alu 0 309 1 2103 134 0 0 chr3 214478112 214478410 -13046168 - AluSq SINE Alu -15 298 1 1161 245 65 81 chr3 214478410 214479186 -13045392 + L2 LINE L2 2518 3259 -54 449 181 87 27 chr3 214479231 214479348 -13045230 - L1MC4 LINE L1 -2 8039 7875 265 202 33 49 chr3 214479602 214479806 -13044772 + (GTGTG)n Simple_repeat Simple_repeat 1 200 0 1107 161 5 2 chr3 214480077 214480316 -13044262 + LTR54 LTR ERV1 238 510 0 2063 109 0 7 chr3 214480765 214481091 -13043487 - AluY SINE Alu 0 324 1 206 325 88 0 chr3 214481125 214481205 -13043373 + MIR SINE MIR 68 154 -108 287 282 32 48 chr3 214482078 214482202 -13042376 - MIR SINE MIR -64 198 77 22 0 0 0 chr3 214482360 214482382 -13042196 + GC_rich Low_complexity Low_complexity 1 22 0 36 70 0 0 chr3 214482476 214482547 -13042031 + GC_rich Low_complexity Low_complexity 1 71 0 21 0 0 0 chr3 214482581 214482602 -13041976 + GC_rich Low_complexity Low_complexity 1 21 0 2156 124 7 0 chr3 214485443 214485742 -13038836 - AluSg SINE Alu -9 301 1 444 124 0 103 chr3 214485769 214485866 -13038712 + L1MC3 LINE L1 6686 6772 -1013 1004 252 61 11 chr3 214485866 214486227 -13038351 - MLT1G3 LTR MaLR -207 348 1 205 385 49 7 chr3 214486433 214486576 -13038002 - L2 LINE L2 -457 2857 2709 910 275 0 19 chr3 214487524 214487786 -13036792 - MIR SINE MIR 0 262 6 183 80 0 0 chr3 214487799 214487824 -13036754 + (T)n Simple_repeat Simple_repeat 1 25 0 1949 147 0 3 chr3 214488262 214488547 -13036031 + AluSg SINE Alu 18 301 -9 403 253 0 0 chr3 214488651 214488738 -13035840 + MLT2B1 LTR ERVL 4 90 -430 2477 173 44 65 chr3 214488759 214489218 -13035360 + MLT2B1 LTR ERVL 1 449 -71 280 62 21 21 chr3 214489218 214489266 -13035312 + (TA)n Simple_repeat Simple_repeat 2 49 0 2477 173 44 65 chr3 214489266 214489325 -13035253 + MLT2B1 LTR ERVL 449 508 -12 305 214 0 12 chr3 214489355 214489439 -13035139 + (TATATG)n Simple_repeat Simple_repeat 2 84 0 198 171 0 0 chr3 214489459 214489500 -13035078 + (CA)n Simple_repeat Simple_repeat 1 41 0 264 253 169 12 chr3 214489701 214489784 -13034794 + MIR SINE MIR 35 130 -78 220 261 209 17 chr3 214490045 214490160 -13034418 - L2 LINE L2 -4 3268 3132 389 286 6 30 chr3 214490257 214490425 -13034153 - L1M4 LINE L1 -3241 2905 2742 615 311 80 0 chr3 214490491 214490729 -13033849 + MIR SINE MIR 6 262 0 1828 207 91 14 chr3 214490740 214490950 -13033628 + L1MD2 LINE L1 5908 6100 -259 240 111 0 0 chr3 214490950 214490986 -13033592 + (CA)n Simple_repeat Simple_repeat 2 37 0 1828 207 91 14 chr3 214490986 214491191 -13033387 + L1MD2 LINE L1 6100 6355 -4 220 341 40 8 chr3 214491687 214491813 -13032765 - MIR3 SINE MIR -31 177 48 2327 123 6 49 chr3 214492197 214492772 -13031806 - MER51A LTR ERV1 0 634 1 234 304 98 7 chr3 214492845 214492996 -13031582 + MIR SINE MIR 31 191 -63 464 273 158 14 chr3 214494029 214494238 -13030340 - L3 LINE CR1 -13 1564 1326 276 316 51 0 chr3 214494865 214494982 -13029596 + MIR SINE MIR 86 208 -54 2643 149 33 18 chr3 214495118 214495567 -13029011 + MLT1C LTR MaLR 9 464 -3 1539 96 5 0 chr3 214495797 214496005 -13028573 - L1PA7 LINE L1 -7 6147 5939 251 289 144 0 chr3 214496173 214496277 -13028301 + MIR3 SINE MIR 84 202 -6 2344 99 0 0 chr3 214497342 214497650 -13026928 - AluSx SINE Alu 0 308 1 875 148 54 20 chr3 214497877 214498059 -13026519 + FRAM SINE Alu 1 185 0 1781 113 0 4 chr3 214499651 214499889 -13024689 + AluSx SINE Alu 1 237 -75 249 57 0 0 chr3 214499902 214499937 -13024641 + (CAAAA)n Simple_repeat Simple_repeat 1 35 0 203 79 26 0 chr3 214500784 214500822 -13023756 + (TA)n Simple_repeat Simple_repeat 1 39 0 1267 169 28 16 chr3 214502178 214502433 -13022145 + L1MC3 LINE L1 7514 7771 -14 222 316 83 8 chr3 214502562 214502695 -13021883 + MIR3 SINE MIR 66 208 0 489 251 105 0 chr3 214502704 214502875 -13021703 - MIR SINE MIR -1 261 73 806 179 199 10 chr3 214503013 214503209 -13021369 - MER58 DNA MER1_type -2185 235 3 238 306 0 0 chr3 214503407 214503469 -13021109 + L2 LINE L2 3252 3313 0 221 135 0 0 chr3 214503526 214503563 -13021015 - MIR3 SINE MIR -43 165 129 277 303 0 46 chr3 214504062 214504171 -13020407 + (CCCG)n Simple_repeat Simple_repeat 4 107 0 * 370 310 0 43 chr3 214504128 214504315 -13020263 + (CTCG)n Simple_repeat Simple_repeat 2 180 0 * 552 233 0 41 chr3 214504196 214504342 -13020236 + (CCCG)n Simple_repeat Simple_repeat 1 140 0 463 255 20 47 chr3 214504752 214504901 -13019677 + MIR3 SINE MIR 41 185 -23 229 375 66 22 chr3 214506727 214506863 -13017715 - L2 LINE L2 -5 3267 3126 232 227 34 68 chr3 214509211 214509299 -13015279 - MIR SINE MIR -66 196 112 269 244 51 0 chr3 214509443 214509521 -13015057 + MIR SINE MIR 37 118 -144 290 350 128 18 chr3 214509584 214509810 -13014768 + L3 LINE CR1 1226 1476 -101 220 254 42 0 chr3 214509878 214509949 -13014629 + MIR SINE MIR 74 147 -61 204 274 16 16 chr3 214510238 214510300 -13014278 - L2 LINE L2 -217 3055 2994 579 288 51 6 chr3 214510889 214511069 -13013509 - MIR SINE MIR 0 262 76 669 297 60 0 chr3 214511458 214511643 -13012935 + MIR SINE MIR 67 262 0 237 358 0 28 chr3 214511747 214511856 -13012722 + MIR SINE MIR 100 205 -57 213 39 0 0 chr3 214512189 214512215 -13012363 + (TTCA)n Simple_repeat Simple_repeat 1 26 0 2200 114 3 13 chr3 214512874 214513182 -13011396 - AluSg SINE Alu -5 305 1 229 309 218 0 chr3 214513216 214513326 -13011252 + MIR SINE MIR 68 201 -61 324 287 31 47 chr3 214514169 214514298 -13010280 - MIR SINE MIR -64 198 72 210 276 55 76 chr3 214515721 214515866 -13008712 - MIR3 SINE MIR -37 171 30 503 73 21 21 chr3 214516161 214516257 -13008321 + (GA)n Simple_repeat Simple_repeat 2 97 0 207 0 0 0 chr3 214516593 214516616 -13007962 + (T)n Simple_repeat Simple_repeat 1 23 0 258 70 70 0 chr3 214516958 214517001 -13007577 - MIR SINE MIR -115 93 48 201 306 171 9 chr3 214519438 214519549 -13005029 + MIR3 SINE MIR 27 155 -53 21 36 0 0 chr3 214522173 214522201 -13002377 + GC_rich Low_complexity Low_complexity 1 28 0 23 0 0 0 chr3 214522638 214522661 -13001917 + GC_rich Low_complexity Low_complexity 1 23 0 224 307 11 23 chr3 214523578 214523666 -13000912 + GA-rich Low_complexity Low_complexity 3 89 0 384 190 0 0 chr3 214524164 214524243 -13000335 + (CAG)n Simple_repeat Simple_repeat 2 80 0 342 67 0 0 chr3 214529458 214529503 -12995075 + (CA)n Simple_repeat Simple_repeat 2 46 0 249 303 92 9 chr3 214529507 214529616 -12994962 + MIR3 SINE MIR 48 165 -43 183 266 0 0 chr3 214530081 214530145 -12994433 + GA-rich Low_complexity Low_complexity 1 64 0 290 289 11 22 chr3 214530597 214530687 -12993891 - MIR3 SINE MIR -7 201 113 1697 179 29 19 chr3 214530873 214531181 -12993397 + AluJo SINE Alu 1 311 -1 2234 177 25 96 chr3 214531421 214531460 -12993118 + L1MC3 LINE L1 6693 6733 -1052 1707 113 0 0 chr3 214531460 214531690 -12992888 - AluSg/x SINE Alu -2 308 79 2234 177 25 96 chr3 214531690 214531974 -12992604 + L1MC3 LINE L1 6733 6950 -835 2427 89 3 3 chr3 214531974 214532277 -12992301 + AluSx SINE Alu 1 303 -9 2234 177 25 96 chr3 214532277 214532597 -12991981 + L1MC3 LINE L1 6950 7291 -494 607 320 116 54 chr3 214532716 214532930 -12991648 + L2 LINE L2 2475 2674 -598 2188 121 3 3 chr3 214532930 214533237 -12991341 - AluSp SINE Alu -4 309 3 607 320 116 54 chr3 214533237 214533536 -12991042 + L2 LINE L2 2674 3018 -254 2235 113 7 0 chr3 214533592 214533893 -12990685 - AluSx SINE Alu -9 303 1 185 94 31 0 chr3 214534064 214534096 -12990482 + A-rich Low_complexity Low_complexity 4 36 0 489 278 0 30 chr3 214534385 214534554 -12990024 + G-rich Low_complexity Low_complexity 4 167 0 200 163 0 20 chr3 214534604 214534653 -12989925 + G-rich Low_complexity Low_complexity 4 51 0 687 201 0 0 chr3 214534707 214534886 -12989692 + G-rich Low_complexity Low_complexity 1 179 0 201 306 171 9 chr3 214536330 214536441 -12988137 + MIR3 SINE MIR 27 155 -53 2192 117 7 0 chr3 214537637 214537927 -12986651 - AluSx SINE Alu -20 292 1 185 94 31 0 chr3 214538098 214538130 -12986448 + A-rich Low_complexity Low_complexity 4 36 0 253 322 23 0 chr3 214538748 214538835 -12985743 - L3 LINE CR1 -11 1566 1478 221 280 0 0 chr3 214539583 214539633 -12984945 + C-rich Low_complexity Low_complexity 1 50 0 229 353 6 24 chr3 214539658 214539825 -12984753 + CT-rich Low_complexity Low_complexity 3 166 0 * 252 389 0 0 chr3 214539721 214539829 -12984749 + C-rich Low_complexity Low_complexity 1 108 0 311 366 0 12 chr3 214539919 214540083 -12984495 + C-rich Low_complexity Low_complexity 2 163 0 884 176 30 69 chr3 214540228 214540461 -12984117 - MER51A LTR ERV1 -410 224 1 276 319 98 7 chr3 214540532 214540683 -12983895 + MIR SINE MIR 31 191 -63 270 264 151 9 chr3 214541716 214541822 -12982756 - L3 LINE CR1 -13 1564 1444 334 237 29 27 chr3 214541879 214542159 -12982419 + CT-rich Low_complexity Low_complexity 1 280 0 335 73 18 0 chr3 214542904 214542959 -12981619 + (TAGA)n Simple_repeat Simple_repeat 3 58 0 384 264 67 81 chr3 214542967 214543475 -12981103 - L1ME4a LINE L1 -44 6077 5577 228 297 22 22 chr3 214543972 214544063 -12980515 + GA-rich Low_complexity Low_complexity 3 93 0 189 356 19 10 chr3 214544556 214544660 -12979918 + MIR3 SINE MIR 99 203 -5 371 297 8 8 chr3 214544696 214544824 -12979754 + L2 LINE L2 2196 2323 -991 228 122 0 0 chr3 214545084 214545125 -12979453 + (C)n Simple_repeat Simple_repeat 1 41 0 23 33 0 0 chr3 214545219 214545249 -12979329 + GC_rich Low_complexity Low_complexity 1 30 0 332 358 49 24 chr3 214545559 214545733 -12978845 + L1ME4a LINE L1 5698 5881 -240 1821 154 7 14 chr3 214545733 214546047 -12978531 + AluSq SINE Alu 1 313 0 332 358 49 24 chr3 214546047 214546118 -12978460 + L1ME4a LINE L1 5881 5949 -172 256 263 26 0 chr3 214546477 214546553 -12978025 + MIR3 SINE MIR 109 186 -22 301 247 0 0 chr3 214546680 214546753 -12977825 - AluS SINE Alu 0 300 228 25 69 0 0 chr3 214546794 214546823 -12977755 + GC_rich Low_complexity Low_complexity 1 29 0 324 245 0 17 chr3 214546828 214547068 -12977510 + C-rich Low_complexity Low_complexity 1 235 0 239 243 14 50 chr3 214547076 214547216 -12977362 + (CCCCG)n Simple_repeat Simple_repeat 1 135 0 187 156 0 67 chr3 214547224 214547314 -12977264 + C-rich Low_complexity Low_complexity 1 84 0 221 278 0 0 chr3 214547373 214547427 -12977151 + C-rich Low_complexity Low_complexity 1 54 0 180 111 0 0 chr3 214547952 214547979 -12976599 + (CA)n Simple_repeat Simple_repeat 1 27 0 23 86 0 0 chr3 214548435 214548493 -12976085 + GC_rich Low_complexity Low_complexity 1 58 0 22 0 0 0 chr3 214548513 214548535 -12976043 + GC_rich Low_complexity Low_complexity 1 22 0 52 0 0 0 chr3 214548560 214548612 -12975966 + GC_rich Low_complexity Low_complexity 1 52 0 195 25 75 25 chr3 214548615 214548655 -12975923 + G-rich Low_complexity Low_complexity 5 46 0 272 227 16 65 chr3 214548660 214548845 -12975733 + (CGGG)n Simple_repeat Simple_repeat 4 179 0 49 93 0 0 chr3 214549291 214549431 -12975147 + GC_rich Low_complexity Low_complexity 1 140 0 1985 135 4 0 chr3 214549748 214550029 -12974549 + AluSx SINE Alu 1 282 -30 21 0 0 0 chr3 214550833 214550854 -12973724 + AT_rich Low_complexity Low_complexity 1 21 0 1861 71 78 0 chr3 214550883 214551152 -12973426 - L1PA8 LINE L1 -3 6169 5880 257 202 29 39 chr3 214552043 214552147 -12972431 + C-rich Low_complexity Low_complexity 4 106 0 298 327 0 31 chr3 214553094 214553278 -12971300 + C-rich Low_complexity Low_complexity 1 178 0 225 196 0 0 chr3 214553289 214553340 -12971238 + C-rich Low_complexity Low_complexity 1 51 0 309 136 25 25 chr3 214554231 214554312 -12970266 + C-rich Low_complexity Low_complexity 2 82 0 283 337 0 0 chr3 214554356 214554457 -12970121 + C-rich Low_complexity Low_complexity 1 101 0 30 27 0 0 chr3 214554557 214554594 -12969984 + GC_rich Low_complexity Low_complexity 1 37 0 3022 196 54 18 chr3 214554751 214555435 -12969143 + L1MC3 LINE L1 7069 7777 -8 357 292 11 11 chr3 214555496 214555585 -12968993 + L1MC4 LINE L1 6614 6702 -1340 311 215 9 103 chr3 214555514 214555621 -12968957 - L1MC4 LINE L1 -1341 6701 6605 * 27 0 0 0 chr3 214556302 214556329 -12968249 + GC_rich Low_complexity Low_complexity 1 27 0 25 31 0 0 chr3 214556790 214556822 -12967756 + AT_rich Low_complexity Low_complexity 1 32 0 189 261 54 65 chr3 214557199 214557291 -12967287 - L2 LINE L2 -212 3060 2970 426 350 11 17 chr3 214557676 214557853 -12966725 + CT-rich Low_complexity Low_complexity 1 176 0 306 316 0 0 chr3 214558253 214558332 -12966246 + G-rich Low_complexity Low_complexity 1 79 0 356 221 25 43 chr3 214559246 214559409 -12965169 + (CCCCG)n Simple_repeat Simple_repeat 4 163 0 856 126 0 22 chr3 214562641 214562776 -12961802 + (G)n Simple_repeat Simple_repeat 1 132 0 263 62 31 82 chr3 214562776 214562873 -12961705 + (CCCCG)n Simple_repeat Simple_repeat 4 95 0 29 0 0 0 chr3 214562873 214562902 -12961676 + GC_rich Low_complexity Low_complexity 1 29 0 212 213 12 25 chr3 214562902 214562982 -12961596 + C-rich Low_complexity Low_complexity 6 84 0 254 382 0 0 chr3 214564388 214564566 -12960012 + C-rich Low_complexity Low_complexity 1 178 0 2802 73 3 12 chr3 214564773 214565366 -12959212 - L1P LINE L1 -4875 1271 556 357 294 23 23 chr3 214566422 214566599 -12957979 + (CGGGG)n Simple_repeat Simple_repeat 1 177 0 332 256 72 108 chr3 214566708 214566903 -12957675 + L1ME4a LINE L1 5716 5903 -218 27 49 0 0 chr3 214567150 214567191 -12957387 + GC_rich Low_complexity Low_complexity 1 41 0 1600 159 0 0 chr3 214567807 214568083 -12956495 + AluSg SINE Alu 1 276 -34 21 0 0 0 chr3 214568249 214568270 -12956308 + GC_rich Low_complexity Low_complexity 1 21 0 1621 165 4 7 chr3 214569130 214569402 -12955176 + MER51A LTR ERV1 364 634 0 227 344 48 8 chr3 214569786 214569911 -12954667 + MIR3 SINE MIR 48 177 -31 21 57 0 0 chr3 214570157 214570192 -12954386 + AT_rich Low_complexity Low_complexity 1 35 0 493 154 132 0 chr3 214570432 214570523 -12954055 - L2 LINE L2 -1 3271 3169 190 293 52 17 chr3 214570506 214570564 -12954014 + L2 LINE L2 3021 3080 -192 * 863 221 13 44 chr3 214570629 214570855 -12953723 - MER58A DNA MER1_type -5 219 1 243 329 37 0 chr3 214570879 214570961 -12953617 + L2 LINE L2 3188 3272 0 261 222 8 43 chr3 214571100 214571217 -12953361 + (CCCCG)n Simple_repeat Simple_repeat 2 114 0 33 25 0 0 chr3 214571243 214571283 -12953295 + GC_rich Low_complexity Low_complexity 1 40 0 23 33 0 0 chr3 214571328 214571358 -12953220 + GC_rich Low_complexity Low_complexity 1 30 0 600 323 123 16 chr3 214572997 214573313 -12951265 - MLT1J LTR MaLR -31 480 131 526 167 125 8 chr3 214573361 214573481 -12951097 - MER63 DNA MER1_type -301 761 2 280 270 0 145 chr3 214573482 214573634 -12950944 - MLT1J LTR MaLR -375 136 7 322 313 228 9 chr3 214573725 214573949 -12950629 + L3 LINE CR1 1233 1505 -72 * 416 317 78 53 chr3 214573946 214574230 -12950348 + L2 LINE L2 2980 3270 -2 22 88 0 0 chr3 214574496 214574553 -12950025 + AT_rich Low_complexity Low_complexity 1 57 0 613 171 24 18 chr3 214574565 214574735 -12949843 + GA-rich Low_complexity Low_complexity 3 173 0 1069 331 103 42 chr3 214574784 214575900 -12948678 + L2 LINE L2 1773 2956 -358 493 154 132 0 chr3 214575966 214576057 -12948521 - L2 LINE L2 -1 3271 3169 187 300 0 20 chr3 214576040 214576090 -12948488 + L2 LINE L2 3021 3069 -203 * 919 218 13 40 chr3 214576162 214576387 -12948191 - MER58A DNA MER1_type -5 219 1 243 329 37 0 chr3 214576411 214576493 -12948085 + L2 LINE L2 3188 3272 0 261 268 12 37 chr3 214578167 214578249 -12946329 - MIR SINE MIR -1 261 182 277 260 67 39 chr3 214578262 214578366 -12946212 + MIR SINE MIR 45 151 -57 682 211 11 0 chr3 214578981 214579156 -12945422 + CT-rich Low_complexity Low_complexity 4 180 0 387 300 42 17 chr3 214580807 214580927 -12943651 - MIR3 SINE MIR -76 132 10 243 319 135 14 chr3 214582369 214582510 -12942068 + MIR3 SINE MIR 51 208 0 1999 133 0 7 chr3 214582729 214583031 -12941547 - AluSx SINE Alu -12 300 1 180 330 87 19 chr3 214583237 214583340 -12941238 - L2 LINE L2 -73 3199 3090 1036 133 0 53 chr3 214583959 214584147 -12940431 - pTR5 LTR ERV1 -1519 919 742 196 216 27 0 chr3 214584294 214584331 -12940247 - L2 LINE L2 -22 3250 3213 254 263 137 0 chr3 214584336 214584431 -12940147 - MIR SINE MIR -103 159 52 273 372 7 15 chr3 214584730 214584867 -12939711 + L2 LINE L2 3169 3304 -9 322 244 44 0 chr3 214585535 214585625 -12938953 + MIR SINE MIR 41 134 -74 1055 175 4 75 chr3 214585800 214586028 -12938550 - MER20 DNA MER1_type -4 215 4 296 298 29 29 chr3 214586181 214586285 -12938293 + MIR SINE MIR 20 123 -139 183 280 20 0 chr3 214587231 214587281 -12937297 + MIR SINE MIR 47 97 -165 239 350 12 0 chr3 214587328 214587408 -12937170 - MIR SINE MIR -75 187 107 1958 63 78 7 chr3 214588359 214588628 -12935950 + L1PA8 LINE L1 5880 6167 -5 21 0 0 0 chr3 214588657 214588678 -12935900 + AT_rich Low_complexity Low_complexity 1 21 0 1567 217 58 58 chr3 214590389 214590843 -12933735 + MLT1D LTR MaLR 5 344 -46 205 214 18 36 chr3 214590844 214590900 -12933678 - L2 LINE L2 -11 3261 3207 1169 254 115 53 chr3 214590931 214591419 -12933159 - LTR33A LTR ERVL 0 523 6 549 158 105 0 chr3 214591427 214591522 -12933056 + MLT1J1 LTR MaLR 81 185 -261 416 340 109 4 chr3 214591612 214592046 -12932532 + L2 LINE L2 2770 3248 -65 734 243 160 21 chr3 214592058 214592396 -12932182 + MLT1J1 LTR MaLR 15 399 -47 288 284 0 0 chr3 214592417 214592484 -12932094 + L2 LINE L2 3245 3311 -2 262 350 70 0 chr3 214592553 214592653 -12931925 + L2 LINE L2 3199 3305 -8 213 338 99 7 chr3 214592779 214592921 -12931657 - MIR SINE MIR -52 210 56 2076 117 0 0 chr3 214592926 214593224 -12931354 - AluSx SINE Alu -14 298 1 199 196 39 20 chr3 214593226 214593277 -12931301 - L2 LINE L2 0 3313 3262 282 56 0 0 chr3 214594338 214594374 -12930204 + (TTTC)n Simple_repeat Simple_repeat 1 36 0 189 0 0 0 chr3 214594406 214594427 -12930151 + (TG)n Simple_repeat Simple_repeat 1 21 0 * 240 35 0 0 chr3 214594426 214594455 -12930123 + (GA)n Simple_repeat Simple_repeat 1 29 0 377 257 27 61 chr3 214594683 214594831 -12929747 - MIR SINE MIR -3 259 117 298 89 44 0 chr3 214594997 214595042 -12929536 + MLT1J1 LTR MaLR 139 185 -261 343 333 58 46 chr3 214596069 214596243 -12928335 - MIR3 SINE MIR -14 194 19 309 299 26 17 chr3 214596652 214596769 -12927809 - MIR3 SINE MIR -5 203 86 470 333 47 12 chr3 214597090 214597261 -12927317 + MIR3 SINE MIR 30 206 -2 387 347 140 9 chr3 214597563 214597785 -12926793 - MIR SINE MIR 0 262 12 611 219 31 82 chr3 214598589 214598785 -12925793 - MIR3 SINE MIR -7 201 16 669 301 41 32 chr3 214599103 214599521 -12925057 + MLT2E LTR ERVL 1 658 -5 863 251 68 34 chr3 214599643 214599878 -12924700 - MIR SINE MIR -4 258 16 301 284 37 18 chr3 214600583 214600692 -12923886 + L1MDa LINE L1 2461 2571 -3969 2143 115 0 10 chr3 214600809 214601122 -12923456 + AluSg SINE Alu 1 310 0 270 263 26 0 chr3 214601239 214601315 -12923263 - MIR3 SINE MIR -22 186 109 355 242 158 0 chr3 214601584 214601679 -12922899 - HAL1b LINE L1 -7 1341 1232 1924 122 0 14 chr3 214601745 214602061 -12922517 - AluSx SINE Alu 0 312 1 247 298 68 43 chr3 214602084 214602245 -12922333 - L1ME LINE L1 -267 5854 5690 5546 122 18 8 chr3 214602283 214603685 -12920893 - L1PA16 LINE L1 -9 6157 4734 1515 196 0 0 chr3 214603734 214604035 -12920543 - L1 LINE L1 -1401 4745 4445 2102 90 0 4 chr3 214604035 214604339 -12920239 - AluSc SINE Alu 0 303 1 390 186 0 14 chr3 214605127 214605197 -12919381 + Tigger2 DNA MER2_type 1 69 -2649 * 2835 129 35 2 chr3 214605195 214605620 -12918958 + Tigger2 DNA MER2_type 2280 2718 0 314 299 167 0 chr3 214605652 214605796 -12918782 - L1ME4a LINE L1 -7 6114 5947 180 111 0 0 chr3 214606616 214606643 -12917935 + (CA)n Simple_repeat Simple_repeat 1 27 0 334 374 32 11 chr3 214607066 214607256 -12917322 - MIR SINE MIR -56 206 13 231 186 68 0 chr3 214607327 214607386 -12917192 - MIR SINE MIR -64 144 82 398 311 87 50 chr3 214607931 214608252 -12916326 - L2 LINE L2 -645 2669 2337 278 313 91 0 chr3 214608575 214608674 -12915904 + MIR SINE MIR 37 144 -64 375 291 27 27 chr3 214609198 214609308 -12915270 - L2 LINE L2 -12 3301 3192 2249 107 7 0 chr3 214609408 214609716 -12914862 - AluSx SINE Alu -2 310 1 185 94 31 0 chr3 214609887 214609919 -12914659 + A-rich Low_complexity Low_complexity 4 36 0 194 234 286 0 chr3 214611037 214611114 -12913464 + L2 LINE L2 3215 3313 0 193 244 116 23 chr3 214611138 214611224 -12913354 - MIR SINE MIR -108 154 61 198 0 0 0 chr3 214611344 214611366 -12913212 + (A)n Simple_repeat Simple_repeat 1 22 0 295 295 137 22 chr3 214611654 214611793 -12912785 + MIR3 SINE MIR 6 160 -48 1869 155 53 85 chr3 214611847 214612246 -12912332 + MLT1B LTR MaLR 1 386 -4 194 0 0 37 chr3 214612418 214612445 -12912133 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 1759 136 42 4 chr3 214612452 214612716 -12911862 - AluSx SINE Alu -38 274 1 476 281 117 0 chr3 214612786 214612957 -12911621 + MER63A DNA MER1_type 1 191 -19 215 350 117 17 chr3 214613117 214613237 -12911341 + MIR3 SINE MIR 23 154 -54 2256 116 0 0 chr3 214614576 214614877 -12909701 - AluSq SINE Alu -12 301 1 1300 245 65 81 chr3 214614877 214615653 -12908925 + L2 LINE L2 2518 3259 -54 459 181 87 27 chr3 214615698 214615815 -12908763 - L1MC4 LINE L1 -2 8039 7875 307 255 16 64 chr3 214615970 214616123 -12908455 - MIR3 SINE MIR -71 137 13 251 265 145 0 chr3 214616529 214616612 -12907966 + MIR SINE MIR 58 152 -110 336 374 25 42 chr3 214616896 214617254 -12907324 + L2 LINE L2 2564 2915 -399 611 214 214 23 chr3 214617323 214617538 -12907040 + MIR SINE MIR 7 262 0 310 301 15 66 chr3 214617710 214617846 -12906732 + L2 LINE L2 3143 3271 -1 186 225 150 12 chr3 214618103 214618183 -12906395 + MIR SINE MIR 16 106 -102 593 253 38 27 chr3 214618217 214618291 -12906287 + MER5A DNA MER1_type 2 74 -115 1659 185 38 0 chr3 214618291 214618583 -12905995 + AluJo SINE Alu 1 303 -9 593 253 38 27 chr3 214618583 214618694 -12905884 + MER5A DNA MER1_type 74 189 0 1580 84 5 14 chr3 214619560 214619774 -12904804 - L1PA7 LINE L1 -3 6151 5940 6821 96 5 11 chr3 214619786 214620768 -12903810 - L1P LINE L1 -2979 3167 2192 203 220 68 0 chr3 214621164 214621223 -12903355 + MIR SINE MIR 104 166 -96 387 234 152 14 chr3 214621310 214621486 -12903092 - MIR SINE MIR -50 212 2 2078 123 7 3 chr3 214621542 214621835 -12902743 - AluJb SINE Alu -18 294 1 244 178 68 55 chr3 214622081 214622154 -12902424 + L3 LINE CR1 1503 1576 -1 334 354 78 39 chr3 214622506 214622763 -12901815 - L3 LINE CR1 -3 1574 1308 263 331 65 29 chr3 214623434 214623573 -12901005 + MIR3 SINE MIR 4 147 -61 202 290 248 55 chr3 214624033 214624178 -12900400 - L2 LINE L2 0 3272 3100 194 184 26 0 chr3 214624460 214624498 -12900080 + MIR SINE MIR 216 254 -8 223 226 48 0 chr3 214624533 214624595 -12899983 - L2 LINE L2 -291 2981 2917 1437 249 25 13 chr3 214625001 214625398 -12899180 + Charlie7 DNA MER1_type 322 723 -1889 578 255 57 77 chr3 214626062 214626245 -12898333 + MIR SINE MIR 10 189 -73 2144 66 0 0 chr3 214626245 214626546 -12898032 + AluY SINE Alu 24 324 0 578 255 57 77 chr3 214626546 214626608 -12897970 + MIR SINE MIR 189 251 -11 1112 161 5 2 chr3 214626995 214627234 -12897344 - LTR54 LTR ERV1 0 510 238 889 134 7 0 chr3 214627271 214627413 -12897165 - L1MA4A LINE L1 -2 6301 6159 912 189 5 30 chr3 214627423 214627624 -12896954 - L1MA4A LINE L1 -262 6041 5846 944 179 68 51 chr3 214627644 214627879 -12896699 - LTR54 LTR ERV1 -271 239 1 466 227 131 40 chr3 214628091 214628289 -12896289 - Zaphod DNA AcHobo -824 3207 2992 997 147 13 0 chr3 214628367 214628524 -12896054 - FRAM SINE Alu -4 172 14 200 204 0 0 chr3 214629147 214629191 -12895387 + (TTAG)n Simple_repeat Simple_repeat 3 46 0 254 285 123 63 chr3 214629259 214629543 -12895035 + L1ME LINE L1 5603 5903 -218 1593 195 82 59 chr3 214630427 214630950 -12893628 - Zaphod DNA AcHobo -518 3513 2979 673 123 13 39 chr3 214630968 214631123 -12893455 + (TTCC)n Simple_repeat Simple_repeat 3 153 0 1220 211 0 33 chr3 214631127 214631397 -12893181 - AluJo SINE Alu -39 273 13 3827 182 141 26 chr3 214631410 214632433 -12892145 - Zaphod DNA AcHobo -1036 2995 1856 3391 225 43 75 chr3 214632457 214632610 -12891968 - Zaphod DNA AcHobo -2887 1144 988 1014 180 44 34 chr3 214632610 214632816 -12891762 - MER3 DNA MER1_type -1 208 1 3391 225 43 75 chr3 214632816 214632958 -12891620 - Zaphod DNA AcHobo -3043 988 843 2298 76 0 3 chr3 214632958 214633249 -12891329 + AluY SINE Alu 16 305 -6 3391 225 43 75 chr3 214633249 214634124 -12890454 - Zaphod DNA AcHobo -3188 843 11 368 318 13 32 chr3 214634304 214634458 -12890120 - MIR SINE MIR -79 183 33 508 321 30 106 chr3 214634822 214635323 -12889255 + L2 LINE L2 2809 3271 -1 229 284 15 0 chr3 214636503 214636570 -12888008 + MIR3 SINE MIR 4 71 -137 312 311 31 66 chr3 214637203 214637399 -12887179 - MIR SINE MIR -71 191 3 226 333 95 12 chr3 214637529 214637613 -12886965 - MIR3 SINE MIR -4 204 114 278 274 72 50 chr3 214637656 214637817 -12886761 + MIR SINE MIR 45 207 -55 210 202 262 12 chr3 214638167 214638251 -12886327 - L2 LINE L2 -7 3265 3161 300 316 98 30 chr3 214638599 214638732 -12885846 - MIR3 SINE MIR -58 150 9 420 243 19 19 chr3 214638863 214638966 -12885612 + MIR3 SINE MIR 86 188 -20 423 240 46 78 chr3 214639736 214639903 -12884675 + MIR SINE MIR 31 196 -66 352 339 0 41 chr3 214639980 214640101 -12884477 - L3 LINE CR1 -206 1371 1256 269 322 23 0 chr3 214640890 214640977 -12883601 + L3 LINE CR1 1478 1566 -11 188 261 54 65 chr3 214641804 214641896 -12882682 + L2 LINE L2 2970 3060 -212 25 31 0 0 chr3 214642273 214642305 -12882273 + AT_rich Low_complexity Low_complexity 1 32 0 305 226 101 113 chr3 214642463 214642790 -12881788 + L1ME4a LINE L1 5591 5913 -208 469 337 26 5 chr3 214643511 214643704 -12880874 - MIR SINE MIR -46 216 20 316 299 104 39 chr3 214644609 214644736 -12879842 + L1ME3A LINE L1 1181 1298 -5232 2353 91 3 0 chr3 214644736 214645033 -12879545 + AluSx SINE Alu 1 298 -14 316 299 104 39 chr3 214645033 214645136 -12879442 + L1ME3A LINE L1 1298 1426 -5104 10831 79 6 9 chr3 214645151 214647325 -12877253 + L1PA7 LINE L1 3985 6154 0 43772 33 21 2 chr3 214647485 214653522 -12871056 + L1PA2 LINE L1 1 6155 0 600 295 58 30 chr3 214653694 214654087 -12870491 + HAL1 LINE L1 1231 1634 -873 318 182 53 83 chr3 214654405 214654537 -12870041 + L1ME3A LINE L1 2452 2579 -3961 234 261 84 35 chr3 214654671 214654813 -12869765 + L1ME3A LINE L1 4031 4179 -2361 617 255 26 74 chr3 214654873 214655183 -12869395 + L1ME3A LINE L1 4504 4798 -1742 356 289 27 71 chr3 214655368 214655593 -12868985 - L1ME LINE L1 -5590 480 266 248 264 139 8 chr3 214655661 214655790 -12868788 - L1ME LINE L1 -5883 187 42 * 729 291 61 28 chr3 214655789 214656184 -12868394 + L1ME3A LINE L1 5927 6334 -230 21 36 0 0 chr3 214656186 214656214 -12868364 + AT_rich Low_complexity Low_complexity 1 28 0 199 331 73 24 chr3 214656803 214656927 -12867651 + L2 LINE L2 2917 3046 -226 254 369 39 0 chr3 214657470 214657573 -12867005 + MIR SINE MIR 25 131 -131 1902 84 32 4 chr3 214657573 214657824 -12866754 - AluY SINE Alu -14 297 40 1756 243 87 40 chr3 214657844 214658374 -12866204 + MLT1G LTR MaLR 8 562 -28 1958 114 44 7 chr3 214658374 214658689 -12865889 - AluSx SINE Alu 0 325 1 288 241 99 78 chr3 214658838 214658979 -12865599 + MIR SINE MIR 89 232 -30 328 282 27 18 chr3 214659394 214659504 -12865074 - MIR SINE MIR -32 230 120 23 0 0 0 chr3 214659707 214659730 -12864848 + AT_rich Low_complexity Low_complexity 1 23 0 1467 228 69 78 chr3 214659932 214660288 -12864290 - Charlie7 DNA MER1_type -1818 794 443 2347 81 0 19 chr3 214660288 214660597 -12863981 - AluY SINE Alu -8 303 1 1467 228 69 78 chr3 214660597 214660792 -12863786 - Charlie7 DNA MER1_type -2169 443 248 839 254 54 12 chr3 214660938 214661178 -12863400 + L1MD2 LINE L1 6088 6337 -22 325 329 94 0 chr3 214661233 214661382 -12863196 + MIR3 SINE MIR 41 203 -5 414 256 39 16 chr3 214662102 214662231 -12862347 + L1MC/D LINE L1 5633 5764 -2044 1729 175 6 33 chr3 214662469 214662833 -12861745 + L1MC4 LINE L1 7595 8042 0 26 30 0 0 chr3 214662835 214662868 -12861710 + AT_rich Low_complexity Low_complexity 1 33 0 209 357 65 24 chr3 214663478 214663646 -12860932 + L2 LINE L2 2799 2973 -341 249 313 47 109 chr3 214664327 214664519 -12860059 + L2 LINE L2 3089 3268 -4 2115 142 0 0 chr3 214664883 214665179 -12859399 - AluSx SINE Alu -16 296 1 485 299 53 45 chr3 214665754 214666018 -12858560 + L3 LINE CR1 1189 1454 -123 359 321 51 95 chr3 214666046 214666320 -12858258 - L2 LINE L2 -15 3257 2996 1871 260 24 9 chr3 214667342 214667844 -12856734 + L1ME1 LINE L1 5669 6334 0 190 275 50 100 chr3 214667980 214668180 -12856398 + L2 LINE L2 2888 3077 -195 1808 179 59 13 chr3 214668249 214668624 -12855954 - Charlie1b DNA MER1_type -131 392 1 7279 205 29 26 chr3 214668641 214669176 -12855402 - L1MC1 LINE L1 0 6333 5801 2258 115 0 3 chr3 214669176 214669480 -12855098 - AluSg SINE Alu -7 303 1 7279 205 29 26 chr3 214669480 214671417 -12853161 - L1MC1 LINE L1 -532 5801 3847 2408 92 3 0 chr3 214671417 214671721 -12852857 - AluSp SINE Alu -8 305 1 7279 205 29 26 chr3 214671721 214672048 -12852530 - L1MC1 LINE L1 -2486 3847 3522 1226 219 18 29 chr3 214672058 214672336 -12852242 - L1MD2 LINE L1 -22 6337 6063 1273 157 0 0 chr3 214673489 214673680 -12850898 - L1PA13 LINE L1 -4 6159 5969 463 252 115 0 chr3 214673819 214673958 -12850620 - MIR3 SINE MIR -13 195 41 356 324 23 29 chr3 214674284 214674457 -12850121 + MIR3 SINE MIR 1 172 -36 344 343 0 0 chr3 214674519 214674624 -12849954 - MIR SINE MIR -58 150 46 31581 40 39 2 chr3 214675213 214679109 -12845469 + L1P LINE L1 1 4040 -2106 186 274 59 0 chr3 214679746 214679797 -12844781 + MIR SINE MIR 93 146 -62 229 284 15 0 chr3 214680104 214680171 -12844407 + MIR3 SINE MIR 4 71 -137 310 322 28 57 chr3 214680813 214680990 -12843588 - MIR SINE MIR -71 191 20 226 333 95 12 chr3 214681139 214681223 -12843355 - MIR3 SINE MIR -4 204 114 278 274 72 50 chr3 214681266 214681427 -12843151 + MIR SINE MIR 45 207 -55 210 202 262 12 chr3 214681777 214681861 -12842717 - L2 LINE L2 -7 3265 3161 280 323 98 30 chr3 214682209 214682342 -12842236 - MIR3 SINE MIR -58 150 9 420 243 19 19 chr3 214682473 214682576 -12842002 + MIR3 SINE MIR 86 188 -20 423 240 46 78 chr3 214683346 214683513 -12841065 + MIR SINE MIR 31 196 -66 352 339 0 41 chr3 214683590 214683711 -12840867 - L3 LINE CR1 -206 1371 1256 269 322 23 0 chr3 214684500 214684587 -12839991 + L3 LINE CR1 1478 1566 -11 188 261 54 65 chr3 214685414 214685506 -12839072 + L2 LINE L2 2970 3060 -212 25 31 0 0 chr3 214685883 214685915 -12838663 + AT_rich Low_complexity Low_complexity 1 32 0 305 226 101 113 chr3 214686073 214686400 -12838178 + L1ME4a LINE L1 5591 5913 -208 469 337 26 5 chr3 214687121 214687314 -12837264 - MIR SINE MIR -46 216 20 316 299 104 39 chr3 214688222 214688349 -12836229 + L1MEd LINE L1 770 887 -5232 2320 91 7 0 chr3 214688349 214688646 -12835932 + AluSx SINE Alu 1 299 -13 316 299 104 39 chr3 214688646 214688749 -12835829 + L1MEd LINE L1 887 1015 -5104 10806 80 8 9 chr3 214688764 214690936 -12833642 + L1PA7 LINE L1 3985 6154 0 43801 34 23 2 chr3 214691095 214697115 -12827463 + L1PA2 LINE L1 1 6152 -3 210 118 0 0 chr3 214697131 214697165 -12827413 + (A)n Simple_repeat Simple_repeat 1 34 0 262 352 22 0 chr3 214697428 214697519 -12827059 - MIR SINE MIR -100 108 16 354 219 9 105 chr3 214697855 214697960 -12826618 - MIR3 SINE MIR -27 181 87 498 262 48 48 chr3 214697976 214698163 -12826415 + MIR SINE MIR 6 192 -70 22 0 0 0 chr3 214698217 214698239 -12826339 + AT_rich Low_complexity Low_complexity 1 22 0 938 269 11 33 chr3 214699189 214699460 -12825118 + MLT1G LTR MaLR 40 304 -286 349 218 179 0 chr3 214699513 214699651 -12824927 + MLT1G LTR MaLR 370 595 0 337 209 58 0 chr3 214699894 214699980 -12824598 + MIR SINE MIR 61 151 -111 963 102 109 0 chr3 214700730 214700877 -12823701 + L1PA14 LINE L1 5997 6159 -2 301 211 68 83 chr3 214701004 214701137 -12823441 - MIR SINE MIR -51 211 81 1316 201 43 17 chr3 214701387 214701835 -12822743 - MLT1D LTR MaLR -6 499 1 564 289 62 5 chr3 214702102 214702296 -12822282 - MIR SINE MIR -56 206 2 46 19 0 0 chr3 214703881 214703934 -12820644 + AT_rich Low_complexity Low_complexity 1 53 0 451 256 62 44 chr3 214704561 214704721 -12819857 + MIR3 SINE MIR 4 166 -42 1143 236 28 44 chr3 214704724 214705088 -12819490 - MLT1A1 LTR MaLR -7 358 1 798 335 153 43 chr3 214705196 214706777 -12817801 + L2 LINE L2 1527 3268 -4 369 304 83 39 chr3 214706868 214707072 -12817506 + MIR SINE MIR 16 228 -34 243 336 22 44 chr3 214707094 214707231 -12817347 + MIR3 SINE MIR 69 202 -6 246 343 76 25 chr3 214708035 214708233 -12816345 + MIR SINE MIR 8 215 -47 389 282 32 8 chr3 214708658 214708782 -12815796 + MIR3 SINE MIR 82 208 0 222 292 53 44 chr3 214709582 214709695 -12814883 - MIR SINE MIR -147 115 2 1666 99 0 0 chr3 214709717 214709928 -12814650 - AluSc SINE Alu -98 211 1 501 62 0 0 chr3 214709993 214710058 -12814520 + (TG)n Simple_repeat Simple_repeat 2 66 0 624 256 6 0 chr3 214710082 214710238 -12814340 + MER5B DNA MER1_type 21 177 -1 1483 200 35 14 chr3 214710334 214710619 -12813959 - AluJo SINE Alu -21 291 1 249 109 0 0 chr3 214711117 214711163 -12813415 + (T)n Simple_repeat Simple_repeat 1 46 0 384 272 82 14 chr3 214711664 214711811 -12812767 - MIR3 SINE MIR -10 198 42 305 303 51 41 chr3 214712355 214712550 -12812028 + L3 LINE CR1 1086 1282 -295 392 277 36 22 chr3 214713098 214713371 -12811207 + L1ME LINE L1 5548 5827 -303 22 0 0 0 chr3 214713503 214713525 -12811053 + AT_rich Low_complexity Low_complexity 1 22 0 385 296 78 0 chr3 214713594 214713736 -12810842 - MIR3 SINE MIR -7 201 49 348 329 18 18 chr3 214714070 214714240 -12810338 - L2 LINE L2 -37 3276 3107 261 210 32 0 chr3 214714270 214714332 -12810246 - L2 LINE L2 -568 2746 2683 185 335 118 88 chr3 214714605 214714936 -12809642 + L2 LINE L2 2928 3268 -4 224 267 67 0 chr3 214715036 214715096 -12809482 + MIR3 SINE MIR 121 184 -24 193 245 0 61 chr3 214715704 214715753 -12808825 - L2 LINE L2 -86 3227 3182 21 0 0 0 chr3 214716076 214716097 -12808481 + AT_rich Low_complexity Low_complexity 1 21 0 276 358 46 7 chr3 214717282 214717433 -12807145 + MIR3 SINE MIR 41 197 -11 315 0 0 0 chr3 214718442 214718477 -12806101 + (T)n Simple_repeat Simple_repeat 1 35 0 250 192 0 0 chr3 214719178 214719230 -12805348 - MIR SINE MIR -109 153 102 192 77 0 0 chr3 214720365 214720391 -12804187 + (TTC)n Simple_repeat Simple_repeat 2 27 0 193 317 50 99 chr3 214720808 214720969 -12803609 - MIR3 SINE MIR -33 175 23 205 333 54 11 chr3 214721111 214721204 -12803374 + MIR3 SINE MIR 108 204 -4 370 216 118 65 chr3 214721297 214721330 -12803248 + MER103 DNA DNA 5 35 -131 2411 79 0 10 chr3 214721330 214721635 -12802943 + AluSc SINE Alu 1 302 -7 370 216 118 65 chr3 214721635 214721754 -12802824 + MER103 DNA DNA 35 165 -1 273 297 86 8 chr3 214722372 214722500 -12802078 - L3 LINE CR1 -109 1468 1331 1479 179 0 75 chr3 214723103 214723438 -12801140 - AluJo SINE Alu -2 310 1 427 172 164 62 chr3 214723615 214723743 -12800835 + MIR3 SINE MIR 30 170 -38 252 0 0 0 chr3 214724503 214724531 -12800047 + (TG)n Simple_repeat Simple_repeat 1 28 0 490 257 13 7 chr3 214724755 214724907 -12799671 - MIR SINE MIR 0 262 110 1896 132 7 7 chr3 214724910 214725214 -12799364 + L1PB1 LINE L1 5845 6148 -3 262 400 48 6 chr3 214725367 214725532 -12799046 + L2 LINE L2 3101 3272 0 373 301 8 0 chr3 214725959 214726082 -12798496 - MIR3 SINE MIR -37 171 48 271 355 14 0 chr3 214726590 214726728 -12797850 + MIR3 SINE MIR 42 181 -27 1819 167 10 0 chr3 214726878 214727172 -12797406 + AluJb SINE Alu 1 297 -15 321 307 11 0 chr3 214727934 214728022 -12796556 - MIR3 SINE MIR -24 184 96 210 239 0 45 chr3 214728038 214728105 -12796473 - MIR3 SINE MIR -23 185 122 1952 205 48 2 chr3 214728676 214729090 -12795488 + MER63B DNA MER1_type 3 435 -1 405 285 98 21 chr3 214729092 214729285 -12795293 + MIR SINE MIR 38 245 -17 185 312 91 71 chr3 214729428 214729582 -12794996 - L2 LINE L2 -96 3176 3020 225 250 17 17 chr3 214730952 214731012 -12793566 - MIR SINE MIR -63 145 86 403 228 65 41 chr3 214731331 214731454 -12793124 - L2 LINE L2 0 3313 3188 207 204 0 0 chr3 214731513 214731557 -12793021 + (TATATG)n Simple_repeat Simple_repeat 3 46 0 775 239 0 0 chr3 214732912 214733075 -12791503 + MIR SINE MIR 2 164 -98 300 300 9 45 chr3 214733724 214733834 -12790744 - MIR3 SINE MIR -13 195 90 190 343 0 29 chr3 214733954 214734024 -12790554 + L2 LINE L2 3204 3271 -1 441 287 18 37 chr3 214734486 214734650 -12789928 - MIR3 SINE MIR -12 196 36 191 398 20 0 chr3 214734706 214734804 -12789774 + L2 LINE L2 3147 3246 -26 2443 77 0 7 chr3 214735108 214735418 -12789160 + AluY SINE Alu 1 308 -3 227 204 86 32 chr3 214735626 214735719 -12788859 - HAL1b LINE L1 -48 1300 1203 297 0 0 0 chr3 214736074 214736107 -12788471 + (CA)n Simple_repeat Simple_repeat 2 34 0 183 333 43 0 chr3 214736157 214736250 -12788328 - MIR SINE MIR -67 195 99 374 227 209 0 chr3 214737664 214737774 -12786804 + MER5A DNA MER1_type 57 189 0 2275 119 3 0 chr3 214738205 214738516 -12786062 + AluSp SINE Alu 2 313 0 514 289 31 21 chr3 214738622 214738816 -12785762 - MIR3 SINE MIR -6 202 7 814 129 7 71 chr3 214739766 214739906 -12784672 - FLAM_C SINE Alu -12 131 1 553 285 47 43 chr3 214739964 214740199 -12784379 - MIR SINE MIR -4 258 23 278 280 65 9 chr3 214740202 214740309 -12784269 - MIR SINE MIR -98 164 52 184 233 0 110 chr3 214741241 214741314 -12783264 - MIR3 SINE MIR -3 205 141 414 286 19 67 chr3 214741318 214741421 -12783157 - L3 LINE CR1 -105 1472 1383 795 203 31 6 chr3 214741421 214741584 -12782994 + FAM SINE Alu 1 167 -8 414 286 19 67 chr3 214741584 214741690 -12782888 - L3 LINE CR1 -194 1383 1273 325 260 32 41 chr3 214741926 214742049 -12782529 + MIR3 SINE MIR 67 188 -20 359 321 9 0 chr3 214742735 214742844 -12781734 + L2 LINE L2 3200 3309 -4 426 272 7 29 chr3 214742873 214743009 -12781569 - MIR SINE MIR -110 152 20 273 309 82 0 chr3 214743538 214743635 -12780943 + MIR3 SINE MIR 85 189 -19 188 295 101 39 chr3 214745219 214745348 -12779230 - L2 LINE L2 -219 3053 2917 281 294 111 7 chr3 214746512 214746665 -12777913 - MIR3 SINE MIR -35 173 5 213 39 0 0 chr3 214747101 214747127 -12777451 + (CA)n Simple_repeat Simple_repeat 2 27 0 215 225 17 0 chr3 214747800 214747868 -12776710 + MIR3 SINE MIR 100 171 -37 495 259 154 6 chr3 214748695 214748857 -12775721 - MER5A DNA MER1_type 0 189 4 196 272 111 0 chr3 214749720 214749801 -12774777 - MIR SINE MIR -169 93 4 1062 286 137 15 chr3 214749927 214750388 -12774190 - LTR33 LTR ERVL 0 521 5 332 268 8 73 chr3 214750634 214750757 -12773821 + MIR SINE MIR 46 160 -102 197 143 48 0 chr3 214751858 214751900 -12772678 - L2 LINE L2 0 3272 3229 409 275 78 66 chr3 214752291 214752535 -12772043 + MIR SINE MIR 2 248 -14 257 345 27 9 chr3 214752555 214752665 -12771913 - MIR SINE MIR -81 127 16 819 263 30 22 chr3 214753347 214753579 -12770999 + MIR SINE MIR 8 241 -21 444 272 87 33 chr3 214754775 214754959 -12769619 + MIR SINE MIR 63 256 -6 213 261 58 0 chr3 214755011 214755080 -12769498 + L2 LINE L2 3011 3083 -189 2383 104 3 0 chr3 214757255 214757562 -12767016 - AluSg SINE Alu -2 308 1 21 57 0 0 chr3 214758525 214758560 -12766018 + AT_rich Low_complexity Low_complexity 1 35 0 911 164 85 0 chr3 214758936 214759113 -12765465 - L1MA8 LINE L1 0 6291 6100 980 107 8 0 chr3 214759113 214759229 -12765349 + L1PA10 LINE L1 6027 6158 -10 930 178 105 10 chr3 214759237 214759451 -12765127 - L1MA8 LINE L1 -144 6161 5918 197 266 203 0 chr3 214759978 214760042 -12764536 + MIR SINE MIR 42 118 -90 426 282 135 6 chr3 214760632 214760802 -12763776 + MIR SINE MIR 10 201 -61 582 213 135 16 chr3 214760852 214761003 -12763575 - MIR3 SINE MIR -26 182 12 1112 194 10 0 chr3 214761671 214761877 -12762701 - MER3 DNA MER1_type -1 208 1 3263 285 155 22 chr3 214762226 214764007 -12760571 - L2 LINE L2 -258 3055 1042 275 344 0 21 chr3 214764824 214764920 -12759658 + MIR3 SINE MIR 63 156 -52 1987 131 7 7 chr3 214766354 214766644 -12757934 + AluSx SINE Alu 1 290 -22 237 280 40 50 chr3 214766824 214766924 -12757654 + L2 LINE L2 3136 3234 -38 563 238 46 20 chr3 214767945 214768096 -12756482 + MIR3 SINE MIR 36 190 -18 2129 117 0 7 chr3 214768568 214768868 -12755710 + AluSx SINE Alu 1 298 -14 332 347 33 20 chr3 214768980 214769130 -12755448 - MIR SINE MIR -106 156 5 197 234 0 0 chr3 214769245 214769292 -12755286 - MIR3 SINE MIR -6 202 156 1925 131 25 0 chr3 214769427 214769709 -12754869 + AluSx SINE Alu 1 289 -23 24 0 0 0 chr3 214770134 214770158 -12754420 + AT_rich Low_complexity Low_complexity 1 24 0 635 252 44 0 chr3 214770786 214770945 -12753633 + MER63A DNA MER1_type 10 175 -35 393 302 11 62 chr3 214771214 214771393 -12753185 + MIR SINE MIR 50 219 -43 673 329 127 37 chr3 214772390 214773334 -12751244 - L2 LINE L2 -3 3269 2240 207 0 0 0 chr3 214773796 214773819 -12750759 + (T)n Simple_repeat Simple_repeat 1 23 0 1963 125 21 0 chr3 214774425 214774714 -12749864 + AluSq SINE Alu 1 295 -18 354 196 21 82 chr3 214774796 214774893 -12749685 - MIR SINE MIR -73 189 99 344 177 38 25 chr3 214775319 214775398 -12749180 + MIR SINE MIR 73 152 -110 329 286 27 61 chr3 214775968 214776115 -12748463 - MIR3 SINE MIR 0 208 67 363 330 138 66 chr3 214776142 214776491 -12748087 - L2 LINE L2 -3 3269 2896 825 278 70 63 chr3 214777859 214778457 -12746121 + L1ME3A LINE L1 5304 5882 -288 1160 249 109 6 chr3 214778724 214779074 -12745504 - MLT1I LTR MaLR -7 402 17 471 258 71 39 chr3 214779461 214779643 -12744935 + MIR SINE MIR 25 212 -50 215 301 29 29 chr3 214779984 214780087 -12744491 - MIR3 SINE MIR -12 196 94 180 333 179 16 chr3 214780110 214780233 -12744345 + MIR3 SINE MIR 38 180 -28 260 192 64 147 chr3 214780882 214781038 -12743540 - MIR SINE MIR -34 228 86 540 176 213 9 chr3 214781498 214781606 -12742972 + MER5A DNA MER1_type 26 155 -34 372 333 81 54 chr3 214781705 214781966 -12742612 + L2 LINE L2 2967 3234 -38 1198 131 6 6 chr3 214783757 214783932 -12740646 + AluSg/x SINE Alu 121 295 -17 369 299 43 53 chr3 214784475 214784682 -12739896 - MIR3 SINE MIR -3 205 1 2324 99 0 6 chr3 214784963 214785275 -12739303 + AluSg SINE Alu 1 310 0 858 204 5 21 chr3 214787654 214787845 -12736733 + MER53 DNA DNA 1 188 -1 296 282 87 30 chr3 214789353 214789504 -12735074 - MIR SINE MIR -58 150 20 1921 164 0 6 chr3 214790062 214790374 -12734204 + AluSg SINE Alu 1 310 0 537 30 0 0 chr3 214790556 214790623 -12733955 + (TG)n Simple_repeat Simple_repeat 2 68 0 291 130 0 0 chr3 214791057 214791111 -12733467 + (CA)n Simple_repeat Simple_repeat 2 55 0 216 0 0 0 chr3 214791331 214791355 -12733223 + (TA)n Simple_repeat Simple_repeat 2 25 0 2198 117 7 23 chr3 214791355 214791663 -12732915 - AluSp SINE Alu -10 303 1 226 269 222 19 chr3 214792187 214792295 -12732283 + L2 LINE L2 3140 3269 -3 292 216 95 0 chr3 214792371 214792445 -12732133 + MIR SINE MIR 81 161 -101 288 354 123 28 chr3 214793125 214793626 -12730952 + L2 LINE L2 2631 3176 -96 180 311 87 0 chr3 214793702 214793805 -12730773 + MIR3 SINE MIR 97 208 0 262 265 59 0 chr3 214794391 214794459 -12730119 + MIR SINE MIR 79 150 -112 219 36 0 0 chr3 214795019 214795047 -12729531 + (TG)n Simple_repeat Simple_repeat 2 29 0 243 329 24 59 chr3 214795095 214795180 -12729398 + MIR SINE MIR 20 101 -161 203 51 51 68 chr3 214795183 214795242 -12729336 + T-rich Low_complexity Low_complexity 6 63 0 1597 138 4 0 chr3 214795256 214795503 -12729075 - L1MA4 LINE L1 -13 6287 6040 250 267 110 20 chr3 214795507 214795653 -12728925 + MIR SINE MIR 93 251 -11 383 305 25 17 chr3 214795674 214795792 -12728786 + MIR3 SINE MIR 66 184 -24 27 0 0 0 chr3 214796332 214796359 -12728219 + AT_rich Low_complexity Low_complexity 1 27 0 356 62 0 74 chr3 214796886 214796967 -12727611 + (CTA)n Simple_repeat Simple_repeat 1 75 0 239 261 111 26 chr3 214797359 214797512 -12727066 + L2 LINE L2 2807 2972 -300 403 311 138 57 chr3 214799081 214799553 -12725025 - L2 LINE L2 0 3313 2724 2085 77 0 70 chr3 214799553 214799885 -12724693 - AluSc SINE Alu 0 311 1 403 311 138 57 chr3 214799885 214800004 -12724574 - L2 LINE L2 -589 2724 2616 204 288 153 0 chr3 214801201 214801260 -12723318 - L2 LINE L2 -32 3240 3173 236 254 105 26 chr3 214801412 214801526 -12723052 - L2 LINE L2 -236 3036 2914 298 266 94 73 chr3 214801659 214801844 -12722734 + MIR SINE MIR 19 202 -60 300 293 120 23 chr3 214802972 214803105 -12721473 + MIR3 SINE MIR 44 189 -19 358 339 71 0 chr3 214803186 214803313 -12721265 + MIR SINE MIR 115 250 -12 229 314 155 24 chr3 214804274 214804481 -12720097 + MIR SINE MIR 20 253 -9 724 254 59 21 chr3 214804561 214804797 -12719781 + MIR SINE MIR 13 257 -5 183 303 79 0 chr3 214805241 214805330 -12719248 - L2 LINE L2 -63 3250 3155 22 0 0 0 chr3 214805606 214805628 -12718950 + AT_rich Low_complexity Low_complexity 1 22 0 236 192 0 0 chr3 214807115 214807167 -12717411 + T-rich Low_complexity Low_complexity 4 55 0 309 221 271 0 chr3 214807915 214808037 -12716541 + MIR SINE MIR 51 205 -57 386 289 195 11 chr3 214809100 214809290 -12715288 + MIR SINE MIR 34 258 -4 944 229 15 5 chr3 214809482 214809683 -12714895 - MER63A DNA MER1_type -1 209 7 2116 62 0 0 chr3 214811307 214811563 -12713015 + AluY SINE Alu 54 309 -2 384 191 117 0 chr3 214812327 214812421 -12712157 + MIR3 SINE MIR 55 159 -49 396 177 52 21 chr3 214812551 214812647 -12711931 + L1MC5 LINE L1 7837 7935 -26 335 314 54 24 chr3 214812672 214812951 -12711627 - L2 LINE L2 -214 3058 2773 268 326 22 11 chr3 214813540 214813629 -12710949 - MIR SINE MIR -71 191 102 30 45 0 0 chr3 214813731 214813775 -12710803 + AT_rich Low_complexity Low_complexity 1 44 0 1381 261 37 37 chr3 214813877 214814387 -12710191 - L2 LINE L2 0 3313 2804 1693 169 0 46 chr3 214814632 214814939 -12709639 - AluJb SINE Alu -7 305 13 2434 177 17 11 chr3 214816026 214816490 -12708088 - L1MD1 LINE L1 -1 6635 6169 4494 69 17 22 chr3 214816490 214817523 -12707055 - MER11A LTR ERVK -1 1265 1 192 40 0 0 chr3 214817527 214817552 -12707026 + (TTTG)n Simple_repeat Simple_repeat 2 26 0 2253 103 0 0 chr3 214817555 214817846 -12706732 - AluSx SINE Alu -21 291 1 1195 204 33 25 chr3 214817847 214818121 -12706457 - L1MD1 LINE L1 -456 6180 5905 * 1989 262 33 25 chr3 214818099 214818452 -12706126 - L1MD1 LINE L1 -855 5685 5336 180 0 0 0 chr3 214818452 214818472 -12706106 + (TTTG)n Simple_repeat Simple_repeat 3 22 0 1989 262 33 25 chr3 214818472 214818848 -12705730 - L1MD1 LINE L1 -1204 5336 4950 511 222 10 0 chr3 214818867 214818966 -12705612 + MLT1D LTR MaLR 2 101 -404 922 145 36 12 chr3 214818975 214819141 -12705437 + MLT1D LTR MaLR 336 505 0 6987 207 48 55 chr3 214819144 214822534 -12702044 - L1MD1 LINE L1 -1602 4938 1581 189 0 0 0 chr3 214822538 214822559 -12702019 + (T)n Simple_repeat Simple_repeat 1 21 0 1870 278 95 4 chr3 214822579 214823083 -12701495 - L1MD1 LINE L1 -5582 958 409 658 265 6 0 chr3 214823096 214823258 -12701320 - L1M4 LINE L1 -3584 2562 2400 * 1800 238 19 0 chr3 214823254 214823616 -12700962 - L1MD1 LINE L1 -6157 383 15 252 372 8 0 chr3 214824117 214824246 -12700332 + L2 LINE L2 3179 3308 -5 365 344 132 0 chr3 214825174 214825386 -12699192 + MIR SINE MIR 20 259 -3 198 0 0 0 chr3 214826572 214826594 -12697984 + (TTA)n Simple_repeat Simple_repeat 3 24 0 2949 52 9 0 chr3 214826594 214826938 -12697640 - L1PA3 LINE L1 -18 6137 5791 2100 178 21 58 chr3 214827422 214827854 -12696724 + MLT1C LTR MaLR 1 416 -51 2204 119 0 3 chr3 214828081 214828393 -12696185 + AluSx SINE Alu 1 311 -1 397 298 64 30 chr3 214828565 214828789 -12695789 + MLT1J1 LTR MaLR 3 240 -169 2258 117 0 0 chr3 214829006 214829305 -12695273 + AluSx SINE Alu 1 299 -13 392 265 48 41 chr3 214829467 214829614 -12694964 - L3 LINE CR1 -125 1452 1305 31 0 0 0 chr3 214829788 214829819 -12694759 + AT_rich Low_complexity Low_complexity 1 31 0 1584 235 98 31 chr3 214830538 214831109 -12693469 + L1ME4a LINE L1 5485 6093 -28 218 337 20 30 chr3 214831424 214831525 -12693053 + MIR SINE MIR 23 122 -86 384 278 31 47 chr3 214831716 214831907 -12692671 - L1ME3A LINE L1 -15 6155 5968 255 196 18 0 chr3 214831963 214832019 -12692559 - L1ME3A LINE L1 -207 5963 5907 26 50 0 0 chr3 214833697 214833737 -12690841 + AT_rich Low_complexity Low_complexity 1 40 0 31 0 0 0 chr3 214833760 214833791 -12690787 + AT_rich Low_complexity Low_complexity 1 31 0 3042 219 67 42 chr3 214833851 214834809 -12689769 + L1ME1 LINE L1 4499 5515 -651 2245 109 0 3 chr3 214834809 214835111 -12689467 - AluSx SINE Alu -11 301 1 3042 219 67 42 chr3 214835111 214835748 -12688830 + L1ME1 LINE L1 5515 6135 -31 664 299 47 44 chr3 214835915 214836253 -12688325 - L1ME3A LINE L1 -303 5818 5480 229 191 0 0 chr3 214836322 214836364 -12688214 + L2 LINE L2 3204 3245 -27 2409 68 3 0 chr3 214836370 214836665 -12687913 + AluSp SINE Alu 3 298 -15 26 0 0 0 chr3 214836881 214836907 -12687671 + AT_rich Low_complexity Low_complexity 1 26 0 360 279 21 29 chr3 214836919 214837059 -12687519 - Charlie7 DNA MER1_type -2456 156 18 181 262 155 0 chr3 214838002 214838086 -12686492 + L2 LINE L2 2964 3060 -212 23 33 0 0 chr3 214838133 214838163 -12686415 + AT_rich Low_complexity Low_complexity 1 30 0 188 450 0 0 chr3 214838164 214838244 -12686334 + L2 LINE L2 3103 3182 -90 511 308 154 26 chr3 214838373 214838795 -12685783 - L2 LINE L2 -926 2388 1913 5444 208 53 41 chr3 214839039 214839126 -12685452 + L1MB8 LINE L1 3764 3848 -2330 2170 102 3 3 chr3 214839126 214839411 -12685167 + AluSq SINE Alu 1 285 -28 5444 208 53 41 chr3 214839411 214840957 -12683621 + L1MB8 LINE L1 3848 5429 -749 1967 186 61 13 chr3 214840957 214841333 -12683245 + MSTD LTR MaLR 1 394 -2 5444 208 53 41 chr3 214841333 214842087 -12682491 + L1MB8 LINE L1 5429 6172 -6 629 245 138 57 chr3 214843089 214843473 -12681105 + MLT1C LTR MaLR 9 423 -44 261 287 85 61 chr3 214843782 214843946 -12680632 + MIR SINE MIR 32 199 -63 610 265 87 19 chr3 214844909 214845285 -12679293 - LTR16A LTR ERVL -11 439 1 1199 308 49 24 chr3 214846139 214846633 -12677945 - L2 LINE L2 -1 3312 2807 23 0 0 0 chr3 214846723 214846746 -12677832 + AT_rich Low_complexity Low_complexity 1 23 0 503 183 25 25 chr3 214846830 214846950 -12677628 - MER113 DNA MER1_type? -401 120 1 599 259 143 19 chr3 214847278 214847494 -12677084 + MLT1J2 LTR MaLR 189 431 -19 299 281 198 36 chr3 214847540 214847732 -12676846 + L3 LINE CR1 1155 1377 -200 287 317 73 16 chr3 214848577 214848700 -12675878 - MIR SINE MIR -56 152 23 312 286 191 7 chr3 214848762 214848909 -12675669 + MIR3 SINE MIR 19 192 -16 504 395 46 6 chr3 214848933 214849434 -12675144 + L2 LINE L2 2454 2974 -340 552 242 25 43 chr3 214849453 214849614 -12674964 + MER97c DNA MER1_type? 22 179 -911 391 349 98 0 chr3 214849824 214849956 -12674622 + L2 LINE L2 3128 3272 0 377 361 24 6 chr3 214850372 214850541 -12674037 - MIR3 SINE MIR -10 198 27 2365 145 30 15 chr3 214850638 214851038 -12673540 - L1MB5 LINE L1 -3 6171 5766 423 294 14 71 chr3 214851219 214851377 -12673201 + MIR3 SINE MIR 1 143 -119 1824 214 8 6 chr3 214851377 214851741 -12672837 - MLT1A1 LTR MaLR 0 365 1 423 294 14 71 chr3 214851741 214851802 -12672776 + MIR3 SINE MIR 143 206 -56 339 272 143 26 chr3 214852916 214853265 -12671313 + L1ME4a LINE L1 5609 5998 -123 2198 135 3 0 chr3 214854839 214855150 -12669428 + AluSx SINE Alu 1 312 0 2234 117 7 0 chr3 214856625 214857003 -12667575 - AluSx SINE Alu 0 380 1 204 380 93 7 chr3 214857136 214857286 -12667292 + L3 LINE CR1 1407 1569 -8 2359 86 0 0 chr3 214857470 214857762 -12666816 - AluSg SINE Alu -14 296 5 235 259 152 10 chr3 214860342 214860443 -12664135 + MIR SINE MIR 42 154 -63 243 303 22 11 chr3 214860849 214860938 -12663640 + MIR3 SINE MIR 81 170 -38 443 269 8 22 chr3 214860943 214860999 -12663579 + MER94 DNA DNA 3 58 -76 2326 98 0 3 chr3 214860999 214861305 -12663273 + AluSc SINE Alu 1 305 -4 443 269 8 22 chr3 214861305 214861382 -12663196 + MER94 DNA DNA 58 134 0 1369 175 55 8 chr3 214861895 214862055 -12662523 + MER65A LTR ERV1 1 152 -293 384 22 0 0 chr3 214862055 214862100 -12662478 + (CA)n Simple_repeat Simple_repeat 2 46 0 1369 175 55 8 chr3 214862100 214862279 -12662299 + MER65A LTR ERV1 152 445 0 231 254 68 0 chr3 214862322 214862381 -12662197 - MIR SINE MIR -68 140 78 394 345 14 7 chr3 214862774 214862919 -12661659 + MIR3 SINE MIR 52 197 -11 1904 105 3 99 chr3 214863424 214863770 -12660808 - AluSp SINE Alu 0 316 1 186 301 97 86 chr3 214863889 214864011 -12660567 + MIR SINE MIR 29 155 -107 1607 129 0 0 chr3 214864011 214864236 -12660342 + AluSg/x SINE Alu 86 310 -2 186 301 97 86 chr3 214864236 214864299 -12660279 + MIR SINE MIR 155 216 -46 275 256 47 12 chr3 214864624 214864710 -12659868 + MIR SINE MIR 44 132 -76 689 267 53 5 chr3 214865041 214865228 -12659350 + Charlie8 DNA MER1_type 7 202 -2215 222 37 0 0 chr3 214865393 214865420 -12659158 + (TG)n Simple_repeat Simple_repeat 2 28 0 394 189 158 79 chr3 214865614 214865778 -12658800 + MER63A DNA MER1_type 31 207 -3 710 302 79 49 chr3 214865964 214866557 -12658021 + L2 LINE L2 2295 2905 -409 556 274 181 21 chr3 214866607 214866888 -12657690 + L2 LINE L2 2988 3313 0 365 244 61 35 chr3 214867616 214867731 -12656847 - MIR3 SINE MIR -23 185 68 1952 138 0 14 chr3 214867860 214868156 -12656422 - AluSg SINE Alu -18 292 1 485 282 18 31 chr3 214868896 214869059 -12655519 - MER5A DNA MER1_type 0 189 29 308 260 0 13 chr3 214869106 214869183 -12655395 + MIR3 SINE MIR 104 179 -29 244 175 0 0 chr3 214869295 214869335 -12655243 - MER4A LTR ERV1 0 664 625 1923 141 35 0 chr3 214869336 214869626 -12654952 - AluSx SINE Alu -11 301 2 1583 141 3 82 chr3 214869627 214869976 -12654602 - MER4A LTR ERV1 -23 641 261 501 151 65 11 chr3 214869976 214870069 -12654509 - MER4A LTR ERV1 -566 98 1 222 37 0 0 chr3 214870384 214870411 -12654167 + (CAAAA)n Simple_repeat Simple_repeat 1 27 0 305 349 89 25 chr3 214871739 214871974 -12652604 + MLT1K LTR MaLR 329 578 -10 267 313 80 0 chr3 214872866 214872978 -12651600 - MIR3 SINE MIR -2 206 86 277 227 23 121 chr3 214875010 214875058 -12649520 + MIR3 SINE MIR 89 140 -68 1956 155 13 0 chr3 214875058 214875361 -12649217 - AluSx SINE Alu -5 307 1 277 227 23 121 chr3 214875361 214875444 -12649134 + MIR3 SINE MIR 140 207 -1 665 316 82 4 chr3 214875537 214875806 -12648772 + MER115 DNA AcHobo 33 322 -371 2252 106 7 0 chr3 214876735 214877028 -12647550 + AluSx SINE Alu 1 295 -17 201 337 84 11 chr3 214877455 214877550 -12647028 - MIR SINE MIR -70 192 91 221 75 25 0 chr3 214877621 214877661 -12646917 + (TTTTTG)n Simple_repeat Simple_repeat 2 42 0 217 312 65 0 chr3 214878490 214878583 -12645995 - MIR3 SINE MIR -2 206 108 207 328 141 8 chr3 214878583 214878711 -12645867 - L2 LINE L2 -1 3271 3127 195 261 0 0 chr3 214878789 214878835 -12645743 + MIR SINE MIR 79 124 -84 348 283 117 32 chr3 214879684 214879828 -12644750 - L1MC/D LINE L1 -361 5801 5671 2305 103 3 0 chr3 214879828 214880128 -12644450 - AluSq SINE Alu -12 301 1 348 283 117 32 chr3 214880128 214880328 -12644250 - L1MC/D LINE L1 -491 5671 5417 300 309 49 0 chr3 214880403 214880526 -12644052 + MIR SINE MIR 20 148 -114 1782 146 0 15 chr3 214880629 214880897 -12643681 + AluSq SINE Alu 1 264 -49 592 294 77 40 chr3 214881478 214881801 -12642777 + MLT1K LTR MaLR 91 425 -163 286 239 18 101 chr3 214882074 214882183 -12642395 + MIR3 SINE MIR 104 203 -5 271 289 54 47 chr3 214882691 214882718 -12641860 - MIR SINE MIR -32 230 205 2347 92 0 13 chr3 214882718 214883032 -12641546 - AluY SINE Alu -1 310 1 271 289 54 47 chr3 214883032 214883153 -12641425 - MIR SINE MIR -57 205 81 206 364 0 0 chr3 214883816 214883871 -12640707 + L2 LINE L2 3212 3266 -6 5916 187 25 12 chr3 214884958 214886892 -12637686 + L1MC2 LINE L1 4375 6335 -9 210 277 0 0 chr3 214887300 214887347 -12637231 + L2 LINE L2 3210 3256 -16 609 330 37 23 chr3 214888024 214888373 -12636205 + L3 LINE CR1 1149 1502 -75 223 230 60 60 chr3 214888533 214888633 -12635945 - MIR SINE MIR -55 207 108 270 252 117 68 chr3 214890061 214890266 -12634312 - MIR SINE MIR -2 260 48 303 316 0 0 chr3 214890714 214890793 -12633785 - L2 LINE L2 -6 3307 3229 285 250 62 12 chr3 214890936 214891016 -12633562 - MER45 DNA AcHobo -94 84 1 2038 139 23 0 chr3 214892644 214892947 -12631631 - AluSx SINE Alu -2 310 1 1795 148 0 21 chr3 214893428 214893718 -12630860 + AluJb SINE Alu 5 288 -24 2139 139 0 3 chr3 214894516 214894818 -12629760 + AluSx SINE Alu 1 301 -11 2394 92 0 7 chr3 214896482 214896785 -12627793 - AluSx SINE Alu -11 301 1 202 349 46 33 chr3 214897587 214897739 -12626839 + L2 LINE L2 2560 2713 -601 1470 261 25 25 chr3 214897753 214898156 -12626422 - MLT1I LTR MaLR -1 408 6 1907 137 0 11 chr3 214899178 214899490 -12625088 - AluJb SINE Alu 0 309 1 927 311 46 44 chr3 214899684 214900115 -12624463 + MER115 DNA AcHobo 25 456 -237 853 162 24 91 chr3 214900191 214900530 -12624048 - L1MA5 LINE L1 -354 5826 5575 2188 121 0 3 chr3 214900530 214900828 -12623750 - AluSx SINE Alu -15 297 1 853 162 24 91 chr3 214900828 214901048 -12623530 - L1MA5 LINE L1 -605 5575 5342 245 287 93 53 chr3 214901595 214901745 -12622833 - MIR3 SINE MIR -29 179 24 357 24 0 0 chr3 214901924 214901966 -12622612 + (TG)n Simple_repeat Simple_repeat 1 42 0 396 279 15 22 chr3 214902300 214902436 -12622142 + MIR3 SINE MIR 30 164 -44 306 308 36 29 chr3 214903446 214903628 -12620950 + MIR SINE MIR 17 193 -63 443 278 58 29 chr3 214903659 214903832 -12620746 + MIR SINE MIR 11 188 -74 367 312 122 54 chr3 214904461 214904830 -12619748 - MLT1J LTR MaLR -7 504 111 2369 49 42 0 chr3 214904949 214905236 -12619342 + AluYa5 SINE Alu 1 299 -12 227 367 33 33 chr3 214905374 214905494 -12619084 + L2 LINE L2 3117 3236 -36 1728 168 7 0 chr3 214906409 214906700 -12617878 + AluSx SINE Alu 14 306 -6 2155 126 0 0 chr3 214907878 214908172 -12616406 - AluSp SINE Alu -19 294 1 730 291 33 63 chr3 214908210 214908452 -12616126 + MLT1J LTR MaLR 120 348 -163 2130 98 29 0 chr3 214908452 214908749 -12615829 - AluSp SINE Alu 0 305 1 730 291 33 63 chr3 214908749 214908904 -12615674 + MLT1J LTR MaLR 348 506 -5 31 82 0 0 chr3 214908971 214909044 -12615534 + AT_rich Low_complexity Low_complexity 1 73 0 1741 198 155 18 chr3 214909241 214909617 -12614961 + MLT1D LTR MaLR 1 324 -181 199 0 0 0 chr3 214909617 214909639 -12614939 + (TTTG)n Simple_repeat Simple_repeat 1 180 0 2073 111 0 24 chr3 214909639 214909928 -12614650 - AluSq SINE Alu -31 282 1 1741 198 155 18 chr3 214909928 214909994 -12614584 + MLT1D LTR MaLR 323 505 0 1905 152 0 4 chr3 214910330 214910641 -12613937 + AluSx SINE Alu 1 283 -29 1988 224 7 14 chr3 214910859 214911305 -12613273 - L1MB5 LINE L1 -11 6163 5721 2350 115 0 0 chr3 214911306 214911618 -12612960 - AluSq SINE Alu -1 312 1 185 330 25 51 chr3 214911702 214911820 -12612758 + MER5A DNA MER1_type 17 131 -58 357 111 14 42 chr3 214914200 214914216 -12610362 + L1P LINE L1 5052 5067 -1079 7028 59 5 0 chr3 214914216 214915170 -12609408 - L1PA6 LINE L1 0 6154 5192 357 111 14 42 chr3 214915170 214915225 -12609353 + L1P LINE L1 5067 5121 -1025 244 250 48 73 chr3 214915588 214915712 -12608866 - L2 LINE L2 -43 3270 3150 2213 120 0 0 chr3 214915736 214916035 -12608543 + AluSx SINE Alu 1 299 -13 195 351 13 40 chr3 214916088 214916239 -12608339 - L2 LINE L2 -212 3060 2914 1993 124 0 11 chr3 214916794 214917104 -12607474 + AluSc SINE Alu 1 307 0 314 278 63 24 chr3 214917225 214917351 -12607227 + MIR SINE MIR 37 167 -95 2248 125 0 0 chr3 214917670 214917975 -12606603 + AluSq SINE Alu 4 308 -5 473 309 100 41 chr3 214918066 214918406 -12606172 + MLT1J LTR MaLR 3 362 -149 1651 226 41 47 chr3 214918469 214918955 -12605623 - MLT1D LTR MaLR 0 505 23 306 250 26 0 chr3 214918966 214919042 -12605536 + MLT1J LTR MaLR 428 505 -6 267 254 34 42 chr3 214919315 214919433 -12605145 - MIR3 SINE MIR -87 121 5 2329 104 0 7 chr3 214920234 214920533 -12604045 - AluSp SINE Alu -16 297 1 241 213 0 0 chr3 214920534 214920581 -12603997 - L3b LINE CR1 -240 1343 1297 214 312 26 13 chr3 214920775 214920852 -12603726 - MIR3 SINE MIR -15 193 116 333 301 98 7 chr3 214921203 214921356 -12603222 - MIR SINE MIR -8 254 88 2109 92 4 11 chr3 214921658 214921930 -12602648 - AluSq SINE Alu -43 270 1 319 341 59 63 chr3 214922204 214922664 -12601914 + L3 LINE CR1 1103 1560 -17 1835 153 0 17 chr3 214922667 214922985 -12601593 - AluJb SINE Alu 0 313 1 2400 92 0 3 chr3 214922996 214923302 -12601276 - AluSc SINE Alu -4 305 1 2130 112 37 0 chr3 214923683 214923979 -12600599 - AluSx SINE Alu -5 307 1 360 352 102 36 chr3 214924881 214925213 -12599365 + L2 LINE L2 2918 3271 -1 420 259 65 49 chr3 214925496 214925681 -12598897 - MIR3 SINE MIR -1 207 20 367 252 109 8 chr3 214925982 214926101 -12598477 - MIR SINE MIR -71 191 61 305 267 27 0 chr3 214926772 214926847 -12597731 + GA-rich Low_complexity Low_complexity 4 80 0 2075 130 7 7 chr3 214927441 214927749 -12596829 - AluSx SINE Alu -4 308 1 203 265 0 112 chr3 214927800 214927898 -12596680 + MIR3 SINE MIR 121 207 -1 350 360 69 22 chr3 214928250 214928525 -12596053 - L3 LINE CR1 -148 1429 1142 338 300 138 27 chr3 214928815 214929075 -12595503 - L3 LINE CR1 -553 1024 736 251 348 13 44 chr3 214929081 214929239 -12595339 - MER5B DNA MER1_type 0 178 26 210 94 189 0 chr3 214929683 214929736 -12594842 - MIR SINE MIR -64 144 82 220 335 81 43 chr3 214929810 214929971 -12594607 - L2 LINE L2 0 3272 3106 2002 117 7 4 chr3 214931031 214931304 -12593274 + AluSc SINE Alu 1 274 -35 1618 181 12 17 chr3 214931553 214931911 -12592667 - MER47B DNA MER2_type 0 418 13 2174 115 0 0 chr3 214932007 214932303 -12592275 + AluSx SINE Alu 13 308 -4 381 374 13 7 chr3 214932343 214932498 -12592080 + L3 LINE CR1 1377 1532 -45 192 333 25 0 chr3 214933054 214933135 -12591443 - MIR3 SINE MIR -52 156 74 219 302 31 31 chr3 214933524 214933620 -12590958 - MIR3 SINE MIR -21 187 92 2118 122 0 16 chr3 214933817 214934129 -12590449 + AluSx SINE Alu 1 307 -5 370 309 46 7 chr3 214934155 214934307 -12590271 + MIR SINE MIR 73 230 -32 185 366 15 8 chr3 214934833 214934967 -12589611 - L3 LINE CR1 -166 1411 1277 2208 112 10 13 chr3 214935335 214935681 -12588897 - AluSx SINE Alu 0 345 1 406 214 0 0 chr3 214936016 214936086 -12588492 - Tigger2 DNA MER2_type 0 2718 2649 2531 67 0 0 chr3 214936086 214936385 -12588193 - AluY SINE Alu -12 299 1 297 0 0 0 chr3 214936385 214936418 -12588160 + (TTA)n Simple_repeat Simple_repeat 1 33 0 648 157 17 9 chr3 214936418 214936533 -12588045 - FLAM_A SINE Alu -26 116 1 2084 165 44 3 chr3 214936534 214936898 -12587680 - Tigger2 DNA MER2_type -60 2658 2280 2319 99 3 0 chr3 214936921 214937224 -12587354 + AluSp SINE Alu 1 304 -9 246 226 38 0 chr3 214937224 214937277 -12587301 - Tigger2 DNA MER2_type -2663 55 1 2358 172 13 55 chr3 214937360 214937479 -12587099 - MSTB2 LTR MaLR 0 457 335 1582 174 60 14 chr3 214937479 214937760 -12586818 + AluJb SINE Alu 1 294 -18 2358 172 13 55 chr3 214937760 214938117 -12586461 - MSTB2 LTR MaLR -122 335 1 1393 259 107 39 chr3 214938356 214938850 -12585728 - MLT1H LTR MaLR 0 549 22 2329 101 19 0 chr3 214938965 214939272 -12585306 + AluSq SINE Alu 1 313 0 674 223 113 18 chr3 214939864 214940093 -12584485 - MIR SINE MIR 0 262 12 2916 127 9 0 chr3 214940272 214940704 -12583874 + L1PA13 LINE L1 5728 6163 0 808 143 186 0 chr3 214940738 214940878 -12583700 - AluSp SINE Alu -14 299 134 238 217 43 43 chr3 214941819 214941888 -12582690 - MIR3 SINE MIR -2 206 138 2197 99 33 0 chr3 214942384 214942686 -12581892 + AluSx SINE Alu 1 312 0 206 229 33 0 chr3 214942700 214942761 -12581817 - L2 LINE L2 -219 3053 2991 1857 95 34 86 chr3 214943475 214943802 -12580776 - AluSg SINE Alu 0 310 1 260 282 233 0 chr3 214943861 214943964 -12580614 - MER5A DNA MER1_type 0 189 63 2014 115 61 7 chr3 214943989 214944284 -12580294 - AluSq SINE Alu 0 313 3 407 187 0 0 chr3 214944285 214944360 -12580218 - MER5A DNA MER1_type -111 78 4 292 266 21 0 chr3 214944698 214944792 -12579786 - L1PBa LINE L1 -4632 2231 2136 289 153 29 197 chr3 214945233 214945370 -12579208 + LTR67 LTR ERVL 3 116 -441 1001 95 0 0 chr3 214945371 214945508 -12579070 - AluY SINE Alu -1 310 174 321 286 196 45 chr3 214945509 214945754 -12578824 + LTR67 LTR ERVL 104 385 -172 235 353 31 52 chr3 214946533 214946819 -12577759 + L2 LINE L2 2812 3091 -181 296 254 0 0 chr3 214947238 214947305 -12577273 + MER94 DNA DNA 1 67 -67 2256 99 3 0 chr3 214947321 214947651 -12576927 + AluSp SINE Alu 1 331 0 206 240 0 0 chr3 214947819 214947869 -12576709 + GA-rich Low_complexity Low_complexity 1 50 0 837 132 6 23 chr3 214947872 214948046 -12576532 + (GAAA)n Simple_repeat Simple_repeat 4 174 0 258 330 57 0 chr3 214948060 214948148 -12576430 - MIR SINE MIR -85 123 31 1956 83 0 80 chr3 214948616 214948905 -12575673 + AluSx SINE Alu 3 268 -44 2126 112 16 3 chr3 214949248 214949551 -12575027 - AluSx SINE Alu -5 307 1 425 137 0 81 chr3 214949717 214949841 -12574737 + AluSq/x SINE Alu 1 114 -189 201 195 0 0 chr3 214950539 214950580 -12573998 + CT-rich Low_complexity Low_complexity 1 41 0 1351 29 23 0 chr3 214950581 214950755 -12573823 + (TTTC)n Simple_repeat Simple_repeat 3 180 0 315 221 27 128 chr3 214951634 214951698 -12572880 - MER94 DNA DNA 0 134 91 2255 99 3 0 chr3 214951698 214952020 -12572558 - AluSp SINE Alu 0 323 1 315 221 27 128 chr3 214952020 214952103 -12572475 - MER94 DNA DNA -43 91 1 235 353 31 52 chr3 214952523 214952809 -12571769 - L2 LINE L2 -181 3091 2812 321 286 196 45 chr3 214953588 214953833 -12570745 - LTR67 LTR ERVL -172 385 104 949 104 0 0 chr3 214953836 214953971 -12570607 + AluY SINE Alu 175 309 -2 289 153 29 197 chr3 214953972 214954109 -12570469 - LTR67 LTR ERVL -441 116 3 292 266 21 0 chr3 214954550 214954644 -12569934 + L1PBa LINE L1 2136 2231 -4632 407 187 0 0 chr3 214954982 214955057 -12569521 + MER5A DNA MER1_type 4 78 -111 2014 115 61 7 chr3 214955058 214955353 -12569225 + AluSq SINE Alu 3 313 0 260 282 233 0 chr3 214955378 214955481 -12569097 + MER5A DNA MER1_type 63 189 0 1857 95 34 86 chr3 214955540 214955867 -12568711 + AluSg SINE Alu 1 310 0 2095 105 33 13 chr3 214956653 214956958 -12567620 - AluSx SINE Alu -1 311 1 238 217 43 43 chr3 214957455 214957524 -12567054 + MIR3 SINE MIR 138 206 -2 709 116 215 0 chr3 214958469 214958612 -12565966 + AluSp SINE Alu 137 305 0 398 302 25 45 chr3 214958613 214958855 -12565723 - MLT1J LTR MaLR -152 359 123 2155 126 0 0 chr3 214958897 214959191 -12565387 + AluSp SINE Alu 1 294 -19 1728 168 7 0 chr3 214960369 214960660 -12563918 - AluSx SINE Alu -6 306 14 227 367 33 33 chr3 214961575 214961695 -12562883 - L2 LINE L2 -36 3236 3117 2329 56 42 0 chr3 214961833 214962120 -12562458 - AluYa5 SINE Alu -12 299 1 367 312 122 54 chr3 214962239 214962608 -12561970 + MLT1J LTR MaLR 111 504 -7 443 278 58 29 chr3 214963237 214963410 -12561168 - MIR SINE MIR -74 188 11 306 308 36 29 chr3 214963441 214963623 -12560955 - MIR SINE MIR -63 145 17 396 279 15 22 chr3 214964634 214964770 -12559808 - MIR3 SINE MIR -44 164 30 357 24 0 0 chr3 214965104 214965146 -12559432 + (CA)n Simple_repeat Simple_repeat 1 42 0 245 287 93 53 chr3 214965325 214965475 -12559103 + MIR3 SINE MIR 24 179 -29 853 162 24 91 chr3 214966025 214966245 -12558333 + L1MA5 LINE L1 5342 5575 -605 2188 121 0 3 chr3 214966245 214966543 -12558035 + AluSx SINE Alu 1 297 -15 853 162 24 91 chr3 214966543 214966882 -12557696 + L1MA5 LINE L1 5575 5826 -354 930 319 47 42 chr3 214966958 214967388 -12557190 - MER115 DNA AcHobo -237 456 25 1908 137 0 11 chr3 214967582 214967894 -12556684 + AluJb SINE Alu 1 309 0 1459 261 25 25 chr3 214969008 214969411 -12555167 + MLT1I LTR MaLR 6 408 -1 207 311 59 42 chr3 214969425 214969544 -12555034 - L2 LINE L2 -601 2713 2593 214 312 26 13 chr3 214969821 214969898 -12554680 - MIR3 SINE MIR -15 193 116 333 301 98 7 chr3 214970249 214970402 -12554176 - MIR SINE MIR -8 254 88 2109 92 4 11 chr3 214970704 214970976 -12553602 - AluSq SINE Alu -43 270 1 319 341 59 63 chr3 214971250 214971710 -12552868 + L3 LINE CR1 1103 1560 -17 1655 161 0 33 chr3 214971713 214972036 -12552542 - AluJb SINE Alu 0 313 1 2354 92 3 3 chr3 214972047 214972352 -12552226 - AluSc SINE Alu -4 305 1 2060 111 37 7 chr3 214972733 214973031 -12551547 - AluSx SINE Alu -5 307 1 360 352 102 36 chr3 214973933 214974265 -12550313 + L2 LINE L2 2918 3271 -1 420 259 65 49 chr3 214974548 214974733 -12549845 - MIR3 SINE MIR -1 207 20 367 252 109 8 chr3 214975034 214975153 -12549425 - MIR SINE MIR -71 191 61 305 267 27 0 chr3 214975824 214975899 -12548679 + GA-rich Low_complexity Low_complexity 4 80 0 2032 115 11 0 chr3 214976519 214976798 -12547780 - AluSx SINE Alu -30 282 1 314 280 48 42 chr3 214976809 214976998 -12547580 - L1MC/D LINE L1 -2205 5603 5414 300 309 49 0 chr3 214977073 214977196 -12547382 + MIR SINE MIR 20 148 -114 2133 133 0 3 chr3 214977299 214977599 -12546979 + AluSx SINE Alu 1 299 -13 1718 173 10 23 chr3 214978622 214978923 -12545655 + AluJo SINE Alu 1 297 -15 206 373 51 17 chr3 214979225 214979402 -12545176 - L2 LINE L2 -577 2737 2555 206 343 14 0 chr3 214979648 214979718 -12544860 + L3 LINE CR1 1404 1474 -103 216 182 0 0 chr3 214979789 214979833 -12544745 + T-rich Low_complexity Low_complexity 1 44 0 222 91 0 0 chr3 214980438 214980471 -12544107 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 429 318 34 20 chr3 214980633 214980837 -12543741 + MIR SINE MIR 16 217 -45 2004 129 0 11 chr3 214980847 214981127 -12543451 + AluSx SINE Alu 1 277 -35 405 0 0 0 chr3 214981133 214981178 -12543400 + (CAAAA)n Simple_repeat Simple_repeat 5 49 0 338 312 60 30 chr3 214981397 214981596 -12542982 - L1ME LINE L1 -515 5606 5402 233 279 93 12 chr3 214981750 214981836 -12542742 - L2 LINE L2 0 3313 3221 355 286 0 11 chr3 214981850 214981941 -12542637 - MIR3 SINE MIR -54 154 65 196 330 73 18 chr3 214982959 214983068 -12541510 - L2 LINE L2 -16 3256 3142 414 220 113 82 chr3 214983168 214983327 -12541251 + MER103 DNA DNA 2 165 -1 2268 122 0 6 chr3 214983958 214984269 -12540309 - AluSg SINE Alu -1 309 1 823 260 87 0 chr3 214985900 214986131 -12538447 + MIR SINE MIR 12 262 0 1257 186 24 4 chr3 214986224 214986472 -12538106 - L1MD3 LINE L1 0 7995 7743 1797 164 0 14 chr3 214986523 214986816 -12537762 - AluJo SINE Alu -23 289 1 2227 113 7 10 chr3 214986866 214987176 -12537402 + AluSx SINE Alu 1 309 -3 233 135 39 39 chr3 214987185 214987237 -12537341 + Alu SINE Alu 249 300 0 203 338 40 0 chr3 214987360 214987434 -12537144 - MIR3 SINE MIR -32 176 100 222 207 86 0 chr3 214987681 214987739 -12536839 + L2 LINE L2 3196 3258 -14 1908 136 7 10 chr3 214988729 214989031 -12535547 - AluSx SINE Alu -7 305 5 21 0 0 0 chr3 214989489 214989510 -12535068 + AT_rich Low_complexity Low_complexity 1 21 0 182 209 23 0 chr3 214989726 214989767 -12534811 - MIR3 SINE MIR -15 193 152 468 252 129 7 chr3 214989767 214989906 -12534672 - MER5A DNA MER1_type -1 188 33 30 0 0 0 chr3 214989960 214989990 -12534588 + AT_rich Low_complexity Low_complexity 1 30 0 217 308 65 9 chr3 214989994 214990101 -12534477 - MIR SINE MIR -67 141 29 462 275 0 9 chr3 214990517 214990626 -12533952 + MIR SINE MIR 20 127 -81 240 229 0 0 chr3 214991270 214991318 -12533260 + MIR SINE MIR 114 161 -101 834 128 0 0 chr3 214992614 214992763 -12531815 + (GA)n Simple_repeat Simple_repeat 1 149 0 442 284 7 11 chr3 214994374 214994647 -12529931 - L1ME4a LINE L1 -210 5911 5600 2388 114 0 0 chr3 214994719 214995027 -12529551 + AluSg SINE Alu 1 308 -2 494 316 32 0 chr3 214995111 214995266 -12529312 - MER58C DNA MER1_type -4 211 52 40 0 0 0 chr3 214995334 214995374 -12529204 + AT_rich Low_complexity Low_complexity 1 40 0 981 163 0 7 chr3 214995380 214995533 -12529045 - FRAM SINE Alu -24 152 1 313 235 25 0 chr3 214995867 214995948 -12528630 + MER5A DNA MER1_type 9 91 -98 239 235 0 0 chr3 214996210 214996261 -12528317 - L2 LINE L2 -12 3260 3210 491 146 54 0 chr3 214996358 214996488 -12528090 + (TA)n Simple_repeat Simple_repeat 1 137 0 272 308 43 26 chr3 214996495 214996612 -12527966 + MER5B DNA MER1_type 60 178 0 286 255 71 0 chr3 214996613 214996711 -12527867 - MIR3 SINE MIR -49 159 55 707 147 6 0 chr3 214997512 214997689 -12526889 + (TA)n Simple_repeat Simple_repeat 2 179 0 22 35 0 0 chr3 214997690 214997719 -12526859 + AT_rich Low_complexity Low_complexity 1 29 0 273 164 22 30 chr3 214997719 214997853 -12526725 + (TTATA)n Simple_repeat Simple_repeat 5 137 0 285 149 26 44 chr3 214997853 214997967 -12526611 + (TATAA)n Simple_repeat Simple_repeat 2 113 0 22 35 0 0 chr3 214997967 214997996 -12526582 + AT_rich Low_complexity Low_complexity 1 29 0 296 250 124 0 chr3 214998057 214998169 -12526409 + MIR SINE MIR 41 168 -61 442 233 46 35 chr3 214999161 214999295 -12525283 - MER20B DNA MER1_type -25 194 57 2154 130 0 0 chr3 214999307 214999600 -12524978 - AluSx SINE Alu -18 294 2 30 69 0 0 chr3 215000057 215000115 -12524463 + AT_rich Low_complexity Low_complexity 1 58 0 1729 95 0 0 chr3 215000559 215000780 -12523798 + AluSq SINE Alu 84 304 -9 2085 97 45 3 chr3 215001024 215001312 -12523266 + AluSq SINE Alu 1 300 -13 1242 260 165 18 chr3 215001605 215002143 -12522435 + MLT1G LTR MaLR 10 590 0 207 301 48 19 chr3 215002411 215002514 -12522064 + MIR SINE MIR 119 224 -38 773 256 66 4 chr3 215002718 215002945 -12521633 + MIR SINE MIR 1 241 -21 266 211 211 0 chr3 215003008 215003084 -12521494 - MIR SINE MIR -122 140 49 185 333 99 52 chr3 215004077 215004269 -12520309 - L2 LINE L2 -217 3055 2855 285 332 64 43 chr3 215004316 215004662 -12519916 - L2 LINE L2 -528 2786 2434 198 253 81 11 chr3 215004722 215004809 -12519769 - L2 LINE L2 -998 2316 2224 1256 165 68 18 chr3 215005167 215005446 -12519132 - MER33 DNA MER1_type -1 323 31 2381 94 7 3 chr3 215005742 215006049 -12518529 - AluSx SINE Alu -4 308 1 281 259 9 28 chr3 215006980 215007088 -12517490 - MIR SINE MIR -72 136 31 780 265 107 13 chr3 215007506 215007740 -12516838 - MIR SINE MIR -5 257 2 383 316 98 16 chr3 215008334 215008527 -12516051 + MIR SINE MIR 27 235 -27 25 0 0 0 chr3 215008529 215008554 -12516024 + AT_rich Low_complexity Low_complexity 1 25 0 204 317 142 8 chr3 215008714 215008834 -12515744 + L2 LINE L2 2914 3049 -223 2257 124 0 0 chr3 215009778 215010085 -12514493 - AluSg SINE Alu -3 307 1 476 234 65 19 chr3 215010382 215010536 -12514042 + L2 LINE L2 3115 3275 -38 184 304 59 0 chr3 215010563 215010665 -12513913 + MIR SINE MIR 34 141 -121 2284 97 0 7 chr3 215010675 215010974 -12513604 + AluSq SINE Alu 1 297 -16 224 267 33 58 chr3 215011775 215011895 -12512683 + MIR3 SINE MIR 5 121 -87 307 250 26 0 chr3 215012167 215012243 -12512335 - MLT1J LTR MaLR -6 505 428 1642 226 41 47 chr3 215012254 215012740 -12511838 + MLT1D LTR MaLR 23 505 0 482 309 100 41 chr3 215012803 215013143 -12511435 - MLT1J LTR MaLR -149 362 3 2057 126 0 7 chr3 215013231 215013541 -12511037 - AluSq SINE Alu -2 311 4 360 278 63 24 chr3 215013860 215013986 -12510592 - MIR SINE MIR -95 167 37 1837 123 0 14 chr3 215014107 215014418 -12510160 - AluSc SINE Alu 0 307 1 23 68 0 0 chr3 215015093 215015137 -12509441 + AT_rich Low_complexity Low_complexity 1 44 0 437 287 87 0 chr3 215015233 215015383 -12509195 - MIR SINE MIR -54 208 46 264 330 41 30 chr3 215016031 215016303 -12508275 - L2 LINE L2 -225 3047 2770 229 217 0 22 chr3 215016926 215016972 -12507606 - L2 LINE L2 -94 3178 3134 268 273 168 18 chr3 215017175 215017285 -12507293 - MIR SINE MIR -42 166 41 241 351 30 8 chr3 215017416 215017547 -12507031 - L2 LINE L2 -240 3032 2899 366 276 60 45 chr3 215018039 215018173 -12506405 + MIR SINE MIR 48 183 -79 251 202 61 81 chr3 215018428 215018527 -12506051 + L1ME LINE L1 5619 5715 -406 418 188 0 0 chr3 215018622 215018691 -12505887 + L2 LINE L2 3204 3272 0 545 281 158 62 chr3 215019675 215020390 -12504188 + L2 LINE L2 2508 3313 0 454 343 97 9 chr3 215020443 215020659 -12503919 + MIR SINE MIR 9 243 -19 283 265 61 20 chr3 215020662 215020760 -12503818 - MIR3 SINE MIR -46 162 61 2027 125 10 0 chr3 215020762 215021065 -12503513 + AluSx SINE Alu 5 310 -2 347 263 14 127 chr3 215021556 215021654 -12502924 + MIR SINE MIR 70 133 -129 2170 137 24 41 chr3 215021654 215022003 -12502575 + L1MB2 LINE L1 5760 6102 -69 1785 183 0 0 chr3 215022003 215022303 -12502275 - AluSx SINE Alu -10 302 3 2170 137 24 41 chr3 215022303 215022370 -12502208 + L1MB2 LINE L1 6102 6169 -2 347 263 14 127 chr3 215022370 215022484 -12502094 + MIR SINE MIR 133 258 -4 2299 93 0 13 chr3 215022898 215023210 -12501368 + AluSx SINE Alu 1 308 -4 504 0 0 0 chr3 215023327 215023383 -12501195 + (TG)n Simple_repeat Simple_repeat 2 57 0 214 259 0 0 chr3 215023652 215023706 -12500872 + A-rich Low_complexity Low_complexity 4 57 0 246 287 129 10 chr3 215023768 215023869 -12500709 + MIR SINE MIR 37 149 -59 327 263 145 26 chr3 215023885 215024037 -12500541 + MIR3 SINE MIR 20 189 -19 22 35 0 0 chr3 215024298 215024327 -12500251 + AT_rich Low_complexity Low_complexity 1 29 0 2121 99 0 0 chr3 215025200 215025484 -12499094 + AluSq SINE Alu 1 284 -29 311 120 0 0 chr3 215025484 215025534 -12499044 + AluSp/q SINE Alu 254 303 0 196 333 0 0 chr3 215026797 215026848 -12497730 - L3b LINE CR1 -14 1569 1519 359 262 99 28 chr3 215026865 215027006 -12497572 - L3 LINE CR1 -126 1451 1301 1238 154 194 20 chr3 215027058 215027351 -12497227 + MER2 DNA MER2_type 1 344 0 242 304 64 56 chr3 215027410 215027535 -12497043 - L3 LINE CR1 -617 960 835 474 171 73 41 chr3 215028057 215028180 -12496398 - MIR SINE MIR -70 192 66 369 290 38 49 chr3 215028227 215028410 -12496168 + MIR SINE MIR 59 239 -23 752 183 23 8 chr3 215029604 215029735 -12494843 + FLAM_A SINE Alu 1 133 0 2021 129 0 3 chr3 215029831 215030140 -12494438 + AluSx SINE Alu 5 312 0 21 0 0 0 chr3 215030280 215030301 -12494277 + AT_rich Low_complexity Low_complexity 1 21 0 596 284 44 0 chr3 215030403 215030586 -12493992 - MIR SINE MIR -1 261 71 2279 89 7 3 chr3 215031781 215032085 -12492493 + AluSx SINE Alu 1 305 -7 444 225 0 45 chr3 215032127 215032238 -12492340 + MIR SINE MIR 92 197 -65 284 270 44 53 chr3 215032618 215032787 -12491791 + MIR SINE MIR 44 206 -11 881 108 0 0 chr3 215033595 215033715 -12490863 + FLAM_C SINE Alu 14 133 -10 269 129 0 16 chr3 215033715 215033777 -12490801 + (TA)n Simple_repeat Simple_repeat 1 61 0 263 318 37 19 chr3 215034064 215034171 -12490407 + L3 LINE CR1 1394 1502 -75 183 299 153 34 chr3 215034368 215034545 -12490033 - L2 LINE L2 -21 3251 3054 180 0 0 0 chr3 215034782 215034802 -12489776 + (T)n Simple_repeat Simple_repeat 1 20 0 325 343 7 21 chr3 215035218 215035361 -12489217 + MIR SINE MIR 6 146 -116 281 303 67 8 chr3 215035910 215036029 -12488549 + L2 LINE L2 3145 3270 -2 289 267 52 100 chr3 215036690 215036960 -12487618 - HAL1 LINE L1 0 2507 2251 236 253 91 84 chr3 215037082 215037236 -12487342 - HAL1b LINE L1 -428 920 766 309 296 45 0 chr3 215037320 215037408 -12487170 - HAL1 LINE L1 -343 2164 2073 361 262 28 35 chr3 215038053 215038198 -12486380 - L1ME LINE L1 -301 5820 5677 295 323 129 21 chr3 215038614 215038800 -12485778 + MARNA DNA Mariner 267 472 -114 1667 181 0 7 chr3 215039176 215039480 -12485098 - AluJb SINE Alu -10 302 1 315 267 26 69 chr3 215039607 215039723 -12484855 + MIR3 SINE MIR 98 208 0 236 267 36 97 chr3 215040102 215040154 -12484424 - MIR SINE MIR -74 188 134 2214 89 0 10 chr3 215040154 215040457 -12484121 - AluSx SINE Alu -12 300 1 236 267 36 97 chr3 215040457 215040569 -12484009 - MIR SINE MIR -128 134 34 544 264 52 13 chr3 215040596 215040751 -12483827 - L2 LINE L2 -38 3275 3115 2122 127 0 0 chr3 215041048 215041355 -12483223 + AluSg SINE Alu 1 307 -3 238 317 142 8 chr3 215042298 215042418 -12482160 - L2 LINE L2 -223 3049 2914 25 0 0 0 chr3 215042578 215042603 -12481975 + AT_rich Low_complexity Low_complexity 1 25 0 454 316 98 16 chr3 215042605 215042798 -12481780 - MIR SINE MIR -27 235 27 231 296 57 23 chr3 215043195 215043283 -12481295 + L2 LINE L2 3156 3246 -26 239 262 9 112 chr3 215043485 215043592 -12480986 + MIR3 SINE MIR 5 100 -108 335 225 147 0 chr3 215043739 215043868 -12480710 - MER104 DNA Tc2 -23 157 10 1912 112 3 14 chr3 215044027 215044312 -12480266 - AluSx SINE Alu -30 282 1 2129 106 0 3 chr3 215044821 215045132 -12479446 - AluSx SINE Alu -2 310 1 306 223 123 17 chr3 215046146 215046297 -12478281 + MIR3 SINE MIR 32 200 -8 323 103 0 17 chr3 215046631 215046689 -12477889 + (CGG)n Simple_repeat Simple_repeat 2 58 0 31 44 0 0 chr3 215046781 215046826 -12477752 + GC_rich Low_complexity Low_complexity 1 45 0 320 305 143 7 chr3 215047486 215047640 -12476938 - MIR3 SINE MIR 0 208 34 1977 102 10 7 chr3 215048651 215048944 -12475634 + AluSx SINE Alu 1 294 -18 382 281 0 22 chr3 215048944 215049033 -12475545 + L1MC4 LINE L1 6617 6703 -1339 375 249 0 9 chr3 215048963 215049077 -12475501 - L1MC4 LINE L1 -1339 6983 1995 * 387 264 44 63 chr3 215050111 215050270 -12474308 - MIR SINE MIR -34 228 73 2199 72 3 47 chr3 215050274 215050594 -12473984 - AluY SINE Alu -5 306 1 194 333 28 14 chr3 215050675 215050747 -12473831 - L3 LINE CR1 -87 1490 1418 1498 151 4 0 chr3 215051155 215051393 -12473185 + AluSx SINE Alu 1 239 -73 230 316 71 0 chr3 215051406 215051504 -12473074 + L2 LINE L2 3170 3274 -39 274 135 0 0 chr3 215051515 215051577 -12473001 + AluSx SINE Alu 245 306 0 399 307 28 34 chr3 215051578 215051757 -12472821 + MIR3 SINE MIR 25 202 -6 2441 109 13 19 chr3 215051826 215052201 -12472377 + THE1C LTR MaLR 1 373 -2 312 27 0 0 chr3 215052322 215052359 -12472219 + (CA)n Simple_repeat Simple_repeat 1 37 0 300 326 58 23 chr3 215052553 215052725 -12471853 + L2 LINE L2 3136 3313 0 1047 146 0 0 chr3 215053285 215053456 -12471122 + AluSg/x SINE Alu 138 308 -4 225 209 151 70 chr3 215054034 215054120 -12470458 - L2 LINE L2 -11 3261 3169 876 84 28 22 chr3 215054578 215054757 -12469821 + (TA)n Simple_repeat Simple_repeat 1 180 0 2276 217 19 19 chr3 215054758 215055288 -12469290 - L1MB7 LINE L1 -11 6173 5644 321 225 139 64 chr3 215055862 215056049 -12468529 + L2 LINE L2 2332 2532 -782 920 175 0 0 chr3 215056085 215056239 -12468339 - AluSg/x SINE Alu -12 300 147 194 306 144 27 chr3 215057174 215057285 -12467293 - MIR SINE MIR -71 191 68 583 244 95 18 chr3 215057974 215058142 -12466436 + L2 LINE L2 3128 3308 -5 2070 100 4 0 chr3 215058424 215058736 -12465842 - AluSg SINE Alu 0 313 1 2093 95 3 0 chr3 215058736 215059020 -12465558 - AluSq SINE Alu -28 285 1 346 327 142 47 chr3 215059236 215059908 -12464670 - L2 LINE L2 -22 3250 2521 286 286 92 8 chr3 215060082 215060201 -12464377 - MIR SINE MIR -61 147 19 213 290 120 10 chr3 215061147 215061247 -12463331 + MIR SINE MIR 76 186 -76 369 221 0 0 chr3 215061989 215062057 -12462521 - MER94 DNA DNA -66 68 1 2187 107 0 29 chr3 215062186 215062494 -12462084 + AluSx SINE Alu 1 299 -13 1709 173 10 23 chr3 215063517 215063818 -12460760 + AluJo SINE Alu 1 297 -15 252 373 51 17 chr3 215064120 215064297 -12460281 - L2 LINE L2 -577 2737 2555 249 333 128 14 chr3 215064543 215064684 -12459894 + L3 LINE CR1 1404 1560 -17 216 182 0 0 chr3 215064684 215064728 -12459850 + T-rich Low_complexity Low_complexity 1 44 0 210 373 66 12 chr3 215065065 215065226 -12459352 - MIR3 SINE MIR -75 133 15 222 91 0 0 chr3 215065333 215065366 -12459212 + (TGAA)n Simple_repeat Simple_repeat 1 33 0 483 299 55 36 chr3 215065516 215065738 -12458840 + MIR SINE MIR 4 228 -34 1981 129 0 11 chr3 215065742 215066022 -12458556 + AluSx SINE Alu 1 277 -35 360 0 0 0 chr3 215066028 215066068 -12458510 + (CAAAA)n Simple_repeat Simple_repeat 5 44 0 356 312 60 30 chr3 215066287 215066486 -12458092 - L1ME LINE L1 -515 5606 5402 387 304 49 17 chr3 215066660 215066832 -12457746 - MIR3 SINE MIR -14 248 63 259 317 100 17 chr3 215067836 215067956 -12456622 - L2 LINE L2 -1 3271 3142 420 220 113 82 chr3 215068056 215068215 -12456363 + MER103 DNA DNA 2 165 -1 2255 122 0 6 chr3 215068846 215069157 -12455421 - AluSg SINE Alu -1 309 1 493 273 138 54 chr3 215070097 215070525 -12454053 + L1M2 LINE L1 512 1252 -5597 446 69 0 28 chr3 215070558 215070630 -12453948 + (GGGAA)n Simple_repeat Simple_repeat 1 70 0 1111 59 5 38 chr3 215070636 215070822 -12453756 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 209 194 0 0 chr3 215070822 215070858 -12453720 + GA-rich Low_complexity Low_complexity 2 37 0 1712 228 85 98 chr3 215070858 215071662 -12452916 + L1MC4 LINE L1 7090 7880 -162 369 0 0 0 chr3 215071662 215071703 -12452875 + (TG)n Simple_repeat Simple_repeat 2 42 0 1712 228 85 98 chr3 215071703 215071864 -12452714 + L1MC4 LINE L1 7880 8042 0 281 227 159 0 chr3 215072041 215072166 -12452412 - AluJb SINE Alu 0 339 201 1137 185 18 4 chr3 215072172 215072399 -12452179 - AluJo SINE Alu -66 246 17 270 0 0 0 chr3 215073034 215073064 -12451514 + (TA)n Simple_repeat Simple_repeat 1 30 0 391 231 182 16 chr3 215073494 215073615 -12450963 - MER5B DNA MER1_type -36 142 2 2299 101 17 0 chr3 215073715 215074011 -12450567 - AluSx SINE Alu -11 301 1 248 234 31 31 chr3 215074406 215074470 -12450108 - MIR SINE MIR -62 146 83 191 353 78 0 chr3 215075349 215075451 -12449127 - MIR3 SINE MIR -40 168 59 815 175 15 0 chr3 215075692 215075829 -12448749 + FLAM_C SINE Alu 2 140 -3 216 253 77 55 chr3 215076028 215076119 -12448459 - L2 LINE L2 -10 3262 3170 2019 118 7 7 chr3 215076139 215076419 -12448159 + AluSq SINE Alu 18 297 -16 293 254 34 42 chr3 215077220 215077338 -12447240 + MIR3 SINE MIR 5 121 -87 349 299 58 23 chr3 215078174 215078358 -12446220 + MIR3 SINE MIR 10 193 -63 499 278 58 29 chr3 215078389 215078562 -12446016 + MIR SINE MIR 11 188 -74 377 312 122 54 chr3 215079191 215079560 -12445018 - MLT1J LTR MaLR -7 504 111 2352 45 42 0 chr3 215079679 215079966 -12444612 + AluYa5 SINE Alu 1 299 -12 261 367 33 33 chr3 215080104 215080224 -12444354 + L2 LINE L2 3117 3236 -36 1669 181 0 3 chr3 215081139 215081427 -12443151 + AluSx SINE Alu 14 300 -12 1584 234 156 109 chr3 215081431 215081982 -12442596 + L1MC4a LINE L1 5318 5842 -1966 327 65 0 0 chr3 215081982 215082028 -12442550 + (TA)n Simple_repeat Simple_repeat 2 47 0 1584 234 156 109 chr3 215082028 215082115 -12442463 + L1MC4a LINE L1 5842 5923 -1885 229 65 0 0 chr3 215082115 215082161 -12442417 + LTR66 LTR ERVL 394 439 -171 1584 234 156 109 chr3 215082161 215083110 -12441468 + L1MC4a LINE L1 5923 7027 -781 285 197 0 0 chr3 215083110 215083171 -12441407 + GA-rich Low_complexity Low_complexity 2 62 0 197 156 0 22 chr3 215083162 215083207 -12441371 + G-rich Low_complexity Low_complexity 3 46 0 * 285 75 0 0 chr3 215083662 215083702 -12440876 + (TG)n Simple_repeat Simple_repeat 2 41 0 206 306 0 0 chr3 215083905 215083954 -12440624 + polypyrimidine Low_complexity Low_complexity 3 51 0 304 167 39 10 chr3 215084266 215084368 -12440210 + GA-rich Low_complexity Low_complexity 1 105 0 207 0 0 0 chr3 215085809 215085832 -12438746 + (T)n Simple_repeat Simple_repeat 1 23 0 185 191 16 48 chr3 215085979 215086042 -12438536 - MIR SINE MIR -34 228 168 289 20 61 20 chr3 215086064 215086113 -12438465 + (CAAAAA)n Simple_repeat Simple_repeat 4 54 0 1793 133 194 0 chr3 215086122 215086452 -12438126 - MER57A LTR ERV1 -9 394 1 471 289 66 43 chr3 215086613 215086824 -12437754 - MIR SINE MIR -16 246 31 195 274 32 16 chr3 215087075 215087137 -12437441 + MIR SINE MIR 82 144 -64 315 0 0 0 chr3 215087437 215087472 -12437106 + (TG)n Simple_repeat Simple_repeat 2 36 0 2088 90 11 0 chr3 215087472 215087739 -12436839 - AluSx SINE Alu -42 270 1 366 42 0 0 chr3 215087763 215087811 -12436767 + (TTTTC)n Simple_repeat Simple_repeat 3 50 0 604 225 0 73 chr3 215087814 215087992 -12436586 + L1ME2 LINE L1 5909 6073 -91 283 313 147 13 chr3 215088661 215088811 -12435767 + MIR3 SINE MIR 33 202 -6 198 138 0 0 chr3 215089986 215090015 -12434563 + MIR SINE MIR 81 109 -99 420 266 108 14 chr3 215090102 215090241 -12434337 - MER117 DNA MER1_type -32 165 14 194 269 83 62 chr3 215090243 215090388 -12434190 - MIR3 SINE MIR -60 148 1 1719 142 33 56 chr3 215091909 215092211 -12432367 + AluSx SINE Alu 1 295 -17 1343 240 100 34 chr3 215093279 215093754 -12430824 + MLT1F1 LTR MaLR 1 500 -67 2288 81 37 0 chr3 215093765 215094060 -12430518 - AluSp SINE Alu -7 306 1 228 368 92 0 chr3 215094092 215094179 -12430399 + L2 LINE L2 3161 3255 -17 2034 124 0 0 chr3 215094199 215094472 -12430106 + AluSc SINE Alu 22 294 -15 180 386 18 0 chr3 215094496 215094553 -12430025 + L2 LINE L2 3129 3186 -86 780 187 0 15 chr3 215095925 215096059 -12428519 - FLAM_C SINE Alu 0 133 2 11370 109 24 14 chr3 215096391 215098053 -12426525 - Tigger1 DNA MER2_type -738 1680 2 514 289 13 20 chr3 215099011 215099163 -12425415 - MIR3 SINE MIR -14 194 44 315 0 0 0 chr3 215099444 215099479 -12425099 + (TG)n Simple_repeat Simple_repeat 1 35 0 234 250 0 0 chr3 215099479 215099531 -12425047 + GA-rich Low_complexity Low_complexity 2 53 0 282 310 52 39 chr3 215099556 215099711 -12424867 - MIR3 SINE MIR -3 205 49 344 288 104 40 chr3 215101914 215102039 -12422539 + MIR3 SINE MIR 15 147 -61 440 78 43 35 chr3 215102084 215102199 -12422379 + GA-rich Low_complexity Low_complexity 1 116 0 286 252 98 32 chr3 215102365 215102488 -12422090 + L1ME4a LINE L1 5991 6121 0 195 279 0 0 chr3 215102749 215102792 -12421786 + L2 LINE L2 3206 3248 -24 1549 209 0 29 chr3 215102885 215103192 -12421386 - AluJo SINE Alu -14 298 1 207 69 0 0 chr3 215103435 215103464 -12421114 + (TG)n Simple_repeat Simple_repeat 2 30 0 803 191 0 0 chr3 215103529 215103660 -12420918 + FRAM SINE Alu 25 155 -21 959 98 15 0 chr3 215103734 215103866 -12420712 - AluSg/x SINE Alu -19 293 160 1477 101 0 10 chr3 215103868 215104067 -12420511 - AluSx SINE Alu -115 197 1 189 0 0 0 chr3 215104309 215104330 -12420248 + (TAA)n Simple_repeat Simple_repeat 1 21 0 2015 111 29 11 chr3 215104475 215104777 -12419801 + AluSx SINE Alu 1 307 0 236 195 110 24 chr3 215104810 215104892 -12419686 + L1ME4a LINE L1 6033 6121 0 214 340 35 67 chr3 215106605 215106804 -12417774 - MIR SINE MIR -48 214 21 2404 92 3 0 chr3 215107307 215107612 -12416966 - AluSq SINE Alu -7 306 1 390 321 89 22 chr3 215108217 215108441 -12416137 + MLT1K LTR MaLR 10 248 -340 441 206 15 81 chr3 215108684 215108820 -12415758 - L3 LINE CR1 -552 1025 899 2088 25 0 8 chr3 215108825 215109063 -12415515 + L1PA3 LINE L1 5920 6155 0 29 0 0 0 chr3 215109063 215109092 -12415486 + AT_rich Low_complexity Low_complexity 1 29 0 216 343 19 9 chr3 215109092 215109200 -12415378 - L3 LINE CR1 -667 910 802 2226 107 0 0 chr3 215109940 215110229 -12414349 + AluSx SINE Alu 1 289 -23 211 188 35 71 chr3 215110821 215110906 -12413672 + MIR3 SINE MIR 111 192 -16 2559 163 16 7 chr3 215111320 215111744 -12412834 + MSTA LTR MaLR 1 428 0 239 221 42 63 chr3 215111957 215112052 -12412526 - MIR3 SINE MIR -113 95 3 2008 122 16 13 chr3 215112255 215112558 -12412020 + AluSx SINE Alu 2 305 -7 214 221 125 58 chr3 215112615 215112719 -12411859 - MIR3 SINE MIR -49 159 49 470 309 101 42 chr3 215113790 215114127 -12410451 + MLT1J LTR MaLR 6 362 -149 1647 223 42 49 chr3 215114204 215114676 -12409902 - MLT1D LTR MaLR -14 491 23 305 250 26 0 chr3 215114687 215114763 -12409815 + MLT1J LTR MaLR 428 505 -6 196 219 19 114 chr3 215165037 215165142 -12359436 - MIR SINE MIR -41 221 127 2272 113 3 0 chr3 215165544 215165853 -12358725 - AluY SINE Alu -1 310 1 276 100 0 0 chr3 215166007 215166047 -12358531 + (CA)n Simple_repeat Simple_repeat 2 41 0 336 295 104 77 chr3 215166124 215166660 -12357918 + L1MB8 LINE L1 5255 5805 -316 232 354 47 16 chr3 215167918 215168045 -12356533 - MIR SINE MIR -99 163 33 1130 184 0 28 chr3 215168275 215168487 -12356091 + AluJo SINE Alu 1 206 -106 23 0 0 0 chr3 215168519 215168542 -12356036 + AT_rich Low_complexity Low_complexity 1 23 0 180 204 74 37 chr3 215168872 215168926 -12355652 - L2 LINE L2 -1761 1553 1498 196 167 0 50 chr3 215169017 215169077 -12355501 + GA-rich Low_complexity Low_complexity 3 59 0 593 259 203 5 chr3 215169343 215169555 -12355023 + MIR SINE MIR 9 262 0 853 178 60 147 chr3 215170571 215170986 -12353592 + L1MB8 LINE L1 5800 6178 0 253 247 129 11 chr3 215171294 215171387 -12353191 - MER91A DNA MER1_type -92 104 1 41966 41 1 1 chr3 215171501 215177654 -12346924 + L1PA4 LINE L1 1 6152 -3 23 33 0 0 chr3 215178065 215178095 -12346483 + AT_rich Low_complexity Low_complexity 1 30 0 2275 111 0 13 chr3 215178406 215178722 -12345856 + AluSx SINE Alu 1 312 0 195 317 87 62 chr3 215179560 215179721 -12344857 - L2 LINE L2 -8 3264 3100 234 0 0 0 chr3 215180133 215180159 -12344419 + (TA)n Simple_repeat Simple_repeat 2 27 0 243 306 47 47 chr3 215180367 215180452 -12344126 + L2 LINE L2 3141 3225 -47 224 337 126 0 chr3 215181418 215181513 -12343065 + MIR SINE MIR 52 158 -104 2141 130 0 0 chr3 215181550 215181850 -12342728 + AluSg1 SINE Alu 1 300 -9 258 299 79 37 chr3 215181888 215182052 -12342526 - MIR3 SINE MIR -5 203 33 305 247 90 11 chr3 215182077 215182166 -12342412 + MIR SINE MIR 167 262 0 328 252 22 108 chr3 215182220 215182407 -12342171 - MIR SINE MIR -50 212 43 261 0 0 0 chr3 215183026 215183055 -12341523 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 414 53 0 0 chr3 215183054 215183111 -12341467 + (TG)n Simple_repeat Simple_repeat 2 58 0 468 331 53 0 chr3 215183176 215183345 -12341233 + MIR3 SINE MIR 6 183 -25 278 342 0 26 chr3 215184460 215184574 -12340004 + L2 LINE L2 2948 3058 -214 485 250 136 61 chr3 215184969 215185197 -12339381 - MIR SINE MIR -4 258 14 2299 99 0 3 chr3 215185248 215185552 -12339026 - AluSg SINE Alu -7 303 1 43 35 0 0 chr3 215186127 215186184 -12338394 + AT_rich Low_complexity Low_complexity 1 57 0 207 365 0 0 chr3 215187160 215187212 -12337366 + L2 LINE L2 3127 3178 -94 2037 117 0 4 chr3 215187309 215187583 -12336995 + AluSx SINE Alu 1 273 -39 399 41 0 0 chr3 215187600 215187649 -12336929 + (GGAGA)n Simple_repeat Simple_repeat 2 50 0 2256 117 0 0 chr3 215187975 215188273 -12336305 - AluSg SINE Alu -12 298 1 548 174 46 0 chr3 215189206 215189315 -12335263 - MER58B DNA MER1_type -2 339 226 378 0 0 0 chr3 215189643 215189685 -12334893 + (CA)n Simple_repeat Simple_repeat 1 42 0 325 320 8 23 chr3 215190322 215190450 -12334128 + MIR3 SINE MIR 5 130 -78 562 260 55 7 chr3 215190888 215191034 -12333544 + L3 LINE CR1 1307 1459 -118 321 68 0 0 chr3 215191178 215191222 -12333356 + (TG)n Simple_repeat Simple_repeat 2 45 0 1444 167 17 60 chr3 215191859 215192158 -12332420 - AluJo SINE Alu -26 286 1 24 77 0 0 chr3 215192223 215192275 -12332303 + AT_rich Low_complexity Low_complexity 1 52 0 1301 194 88 15 chr3 215192277 215192577 -12332001 + AluJo SINE Alu 1 319 0 226 299 69 23 chr3 215193496 215193583 -12330995 - MIR3 SINE MIR -8 200 110 312 301 20 44 chr3 215193824 215193990 -12330588 + MIR SINE MIR 31 197 -11 2161 125 0 0 chr3 215194237 215194540 -12330038 - AluSx SINE Alu -9 303 1 382 274 89 73 chr3 215194847 215195026 -12329552 - MIR3 SINE MIR -7 201 20 273 326 116 20 chr3 215195677 215195824 -12328754 - MIR3 SINE MIR -3 205 45 560 326 85 4 chr3 215196889 215197125 -12327453 + MIR SINE MIR 7 261 -1 180 286 357 8 chr3 215197637 215197763 -12326815 - MIR3 SINE MIR -14 194 25 208 241 0 37 chr3 215198277 215198331 -12326247 - L2 LINE L2 0 3313 3262 254 293 78 16 chr3 215198880 215199071 -12325507 + L1M4 LINE L1 3685 3887 -2259 241 316 0 18 chr3 215199124 215199238 -12325340 + L1M4 LINE L1 3800 3911 -2235 335 345 11 40 chr3 215199450 215199627 -12324951 - L2 LINE L2 -183 3089 2918 226 208 0 0 chr3 215200014 215200067 -12324511 - L1MD3 LINE L1 -10 7985 7933 21 36 0 0 chr3 215200074 215200102 -12324476 + AT_rich Low_complexity Low_complexity 1 28 0 225 211 0 0 chr3 215200496 215200548 -12324030 + (TATATG)n Simple_repeat Simple_repeat 5 56 0 1843 176 3 0 chr3 215200875 215201170 -12323408 - AluJb SINE Alu -16 296 1 24 32 0 0 chr3 215202314 215202345 -12322233 + AT_rich Low_complexity Low_complexity 1 31 0 277 171 14 14 chr3 215202488 215202558 -12322020 + CT-rich Low_complexity Low_complexity 6 75 0 329 359 88 6 chr3 215203056 215203237 -12321341 - MIR3 SINE MIR -11 197 2 24 32 0 0 chr3 215203689 215203720 -12320858 + AT_rich Low_complexity Low_complexity 1 31 0 2207 106 10 0 chr3 215204407 215204709 -12319869 - AluSp SINE Alu -3 310 6 246 293 79 71 chr3 215204715 215204855 -12319723 - MIR SINE MIR -109 153 13 259 272 34 16 chr3 215205768 215205859 -12318719 + MIR3 SINE MIR 5 93 -115 315 261 15 54 chr3 215206866 215206996 -12317582 + L2 LINE L2 2926 3050 -222 323 195 56 191 chr3 215207842 215208057 -12316521 - MER5A DNA MER1_type -1 188 3 339 208 80 0 chr3 215208210 215208319 -12316259 - L1MC4 LINE L1 -2 8040 7864 22 70 0 0 chr3 215208448 215208491 -12316087 + GC_rich Low_complexity Low_complexity 1 43 0 776 146 4 36 chr3 215208946 215209209 -12315369 + GA-rich Low_complexity Low_complexity 1 254 0 266 281 0 0 chr3 215209210 215209267 -12315311 + polypurine Low_complexity Low_complexity 3 59 0 2046 91 19 82 chr3 215210269 215210587 -12313991 + AluSg SINE Alu 1 298 -12 567 0 0 0 chr3 215210598 215210661 -12313917 + (GGAA)n Simple_repeat Simple_repeat 4 66 0 255 360 40 46 chr3 215210883 215211058 -12313520 + MIR SINE MIR 79 252 -10 323 320 16 70 chr3 215211270 215211398 -12313180 + MER5A DNA MER1_type 69 189 0 2507 78 0 0 chr3 215213189 215213498 -12311080 + AluY SINE Alu 1 309 -2 358 284 102 34 chr3 215213576 215213752 -12310826 + MIR3 SINE MIR 20 207 -1 9607 188 48 13 chr3 215215027 215217272 -12307306 + L1MB3 LINE L1 17 2340 -4044 1604 204 23 3 chr3 215217298 215217642 -12306936 + MER47A DNA MER2_type 16 366 0 7509 236 69 19 chr3 215217652 215218356 -12306222 + L1MB3 LINE L1 2351 3018 -3401 2134 103 7 23 chr3 215218356 215218520 -12306058 - AluSg SINE Alu -15 295 137 2321 64 34 0 chr3 215218520 215218818 -12305760 - AluY SINE Alu -3 308 1 2134 103 7 23 chr3 215218818 215218953 -12305625 - AluSg SINE Alu -173 137 1 7509 236 69 19 chr3 215218953 215222108 -12302470 + L1MB3 LINE L1 3018 6412 -7 2149 102 0 20 chr3 215223860 215224155 -12300423 + AluSg SINE Alu 2 290 -20 215 297 16 0 chr3 215224979 215225043 -12299535 - MIR3 SINE MIR -16 192 128 524 108 47 0 chr3 215225073 215225221 -12299357 + (TA)n Simple_repeat Simple_repeat 2 156 0 420 284 142 11 chr3 215225401 215225584 -12298994 - MIR SINE MIR -55 207 1 254 300 100 27 chr3 215226016 215226166 -12298412 - L1ME LINE L1 -527 5594 5434 308 213 0 16 chr3 215226846 215226907 -12297671 - LTR9 LTR ERV1 0 612 553 223 212 15 45 chr3 215231152 215231218 -12293360 + A-rich Low_complexity Low_complexity 1 64 0 315 0 0 0 chr3 215231336 215231371 -12293207 + (CA)n Simple_repeat Simple_repeat 1 35 0 320 311 59 131 chr3 215232186 215232645 -12291933 - L2 LINE L2 -7 3265 2840 341 313 132 7 chr3 215232693 215232837 -12291741 - MIR SINE MIR -98 164 3 538 324 109 75 chr3 215232859 215233439 -12291139 - L2 LINE L2 -577 2737 2129 2059 106 9 70 chr3 215233439 215233769 -12290809 + AluSx SINE Alu 3 312 0 538 324 109 75 chr3 215233769 215233877 -12290701 - L2 LINE L2 -1185 2129 2026 236 303 118 43 chr3 215234006 215234260 -12290318 - L2 LINE L2 -2277 1037 765 1028 249 18 56 chr3 215234787 215235181 -12289397 + MLT2C1 LTR ERVL 1 379 -18 268 267 58 50 chr3 215237349 215237469 -12287109 + L2 LINE L2 2958 3078 -194 365 184 0 13 chr3 215237731 215237807 -12286771 + MER69 DNA AcHobo 35 109 -2417 1270 293 40 23 chr3 215237832 215238355 -12286223 + MER69 DNA AcHobo 210 741 -485 433 220 45 34 chr3 215238388 215238565 -12286013 + MER69 DNA AcHobo 2017 2195 -331 3056 136 8 2 chr3 215238580 215239066 -12285512 - L1PA15 LINE L1 0 6165 5677 414 71 0 0 chr3 215239072 215239128 -12285450 + MADE1 DNA Mariner 25 80 0 10164 205 69 14 chr3 215239128 215242375 -12282203 - L1PA15 LINE L1 -493 5672 2245 295 224 30 0 chr3 215242491 215242558 -12282020 - L1PA15 LINE L1 -4145 2001 1933 393 210 138 6 chr3 215242560 215242727 -12281851 + MER69 DNA AcHobo 2183 2371 -155 232 255 11 0 chr3 215242732 215242825 -12281753 + MER69 DNA AcHobo 2343 2436 -90 1895 170 11 11 chr3 215242825 215243183 -12281395 + MLT1B LTR MaLR 1 358 -32 1010 207 15 0 chr3 215243183 215243386 -12281192 + MER2 DNA MER2_type 1 206 -139 195 252 39 78 chr3 215244097 215244200 -12280378 + MIR SINE MIR 91 189 -73 180 222 130 19 chr3 215244334 215244388 -12280190 + MIR SINE MIR 74 133 -75 359 73 18 0 chr3 215244713 215244768 -12279810 + (GGAA)n Simple_repeat Simple_repeat 3 58 0 255 139 0 23 chr3 215244826 215244869 -12279709 + (GGAA)n Simple_repeat Simple_repeat 3 44 0 441 108 0 75 chr3 215244869 215244989 -12279589 + (GGGAA)n Simple_repeat Simple_repeat 2 112 0 2063 141 3 0 chr3 215246099 215246397 -12278181 + AluSx SINE Alu 1 299 -13 2369 100 0 0 chr3 215246608 215246908 -12277670 - AluSg SINE Alu -10 300 1 223 300 0 0 chr3 215248302 215248352 -12276226 - L2 LINE L2 -15 3298 3249 201 231 31 15 chr3 215249231 215249296 -12275282 - MIR SINE MIR -71 191 126 197 373 27 0 chr3 215249304 215249379 -12275199 - MIR3 SINE MIR -17 191 115 308 333 94 28 chr3 215249815 215250028 -12274550 + L3 LINE CR1 1039 1265 -312 205 338 130 0 chr3 215250153 215250230 -12274348 + L3 LINE CR1 1368 1454 -123 529 335 70 13 chr3 215250247 215250474 -12274104 - MIR SINE MIR 0 262 23 298 314 83 26 chr3 215252085 215252241 -12272337 + MIR3 SINE MIR 38 202 -6 2370 98 3 0 chr3 215252407 215252704 -12271874 - AluSp SINE Alu -15 298 1 225 0 0 0 chr3 215254820 215254845 -12269733 + (TTA)n Simple_repeat Simple_repeat 3 27 0 23473 31 0 1 chr3 215254845 215258424 -12266154 - L1PA3 LINE L1 -18 6137 2561 5895 52 146 10 chr3 215258426 215259315 -12265263 - L1PA3 LINE L1 -5134 1012 3 228 179 36 54 chr3 215259547 215259603 -12264975 - L2 LINE L2 -4 3268 3214 23 0 0 0 chr3 215260213 215260236 -12264342 + AT_rich Low_complexity Low_complexity 1 23 0 3624 124 6 0 chr3 215260397 215260921 -12263657 - MER1A DNA MER1_type 0 527 1 202 208 167 0 chr3 215260929 215260977 -12263601 + MIR SINE MIR 82 137 -71 * 345 271 144 8 chr3 215260972 215261090 -12263488 + L2 LINE L2 3137 3270 -2 248 262 25 82 chr3 215262135 215262257 -12262321 + MIR SINE MIR 98 212 -50 22 0 0 0 chr3 215263856 215263878 -12260700 + AT_rich Low_complexity Low_complexity 1 22 0 216 97 0 0 chr3 215264191 215264222 -12260356 + (TCTA)n Simple_repeat Simple_repeat 1 31 0 190 231 96 0 chr3 215264302 215264354 -12260224 - L2 LINE L2 0 3272 3216 706 266 40 0 chr3 215264976 215265175 -12259403 + MER58A DNA MER1_type 8 214 -10 2113 130 72 17 chr3 215265707 215266052 -12258526 - THE1B LTR MaLR 0 364 1 237 317 99 50 chr3 215266092 215266253 -12258325 - MIR SINE MIR -65 197 29 220 354 61 0 chr3 215266844 215266926 -12257652 + MIR SINE MIR 29 115 -147 478 261 120 16 chr3 215267347 215267531 -12257047 + MIR SINE MIR 5 207 -55 188 67 33 0 chr3 215268750 215268780 -12255798 + (TG)n Simple_repeat Simple_repeat 2 32 0 2276 110 0 7 chr3 215270130 215270440 -12254138 + AluSq SINE Alu 1 308 -5 205 350 165 0 chr3 215271068 215271171 -12253407 - MIR SINE MIR -73 135 16 207 0 0 0 chr3 215271481 215271504 -12253074 + (TA)n Simple_repeat Simple_repeat 1 23 0 300 27 0 0 chr3 215272345 215272382 -12252196 + (TTTAG)n Simple_repeat Simple_repeat 3 39 0 1773 123 0 8 chr3 215272386 215272630 -12251948 - AluSx SINE Alu -32 280 39 408 287 68 56 chr3 215272636 215272887 -12251691 - HAL1 LINE L1 -2 2505 2252 270 0 0 0 chr3 215274033 215274063 -12250515 + (CA)n Simple_repeat Simple_repeat 1 30 0 214 351 189 0 chr3 215274655 215274766 -12249812 - MIR SINE MIR -82 180 49 435 179 28 101 chr3 215274891 215275070 -12249508 - L1MC1 LINE L1 -1 6332 6167 1192 176 0 127 chr3 215275524 215275847 -12248731 - AluJb SINE Alu -30 282 1 23 0 0 0 chr3 215275923 215275946 -12248632 + AT_rich Low_complexity Low_complexity 1 23 0 193 308 70 56 chr3 215276088 215276231 -12248347 - MIR3 SINE MIR -51 157 13 190 217 29 0 chr3 215277239 215277308 -12247270 + GA-rich Low_complexity Low_complexity 3 73 0 278 242 7 34 chr3 215277582 215277731 -12246847 + GA-rich Low_complexity Low_complexity 2 146 0 200 197 0 14 chr3 215278384 215278455 -12246123 + (TA)n Simple_repeat Simple_repeat 2 71 0 491 289 14 21 chr3 215280447 215280589 -12243989 + MIR SINE MIR 48 188 -74 511 264 157 0 chr3 215282756 215282934 -12241644 + MIR SINE MIR 57 262 0 475 291 101 4 chr3 215282946 215283284 -12241294 + MLT1I LTR MaLR 9 407 -2 1030 245 82 29 chr3 215283617 215284029 -12240549 - HsTC2 DNA Tc2 -6 1892 1283 424 303 11 40 chr3 215284159 215284334 -12240244 - MIR SINE MIR -88 174 5 410 215 185 0 chr3 215286018 215286153 -12238425 + L1MB7 LINE L1 5961 6120 -64 462 250 165 20 chr3 215286253 215286453 -12238125 + MIR SINE MIR 29 257 -5 26 0 0 0 chr3 215286465 215286491 -12238087 + AT_rich Low_complexity Low_complexity 1 26 0 207 0 0 0 chr3 215286818 215286841 -12237737 + (TTA)n Simple_repeat Simple_repeat 2 24 0 207 308 124 30 chr3 215286862 215287031 -12237547 + L2 LINE L2 2855 3039 -233 269 319 91 78 chr3 215287352 215287584 -12236994 + L2 LINE L2 3038 3272 0 231 248 7 78 chr3 215288515 215288656 -12235922 + (CGGGG)n Simple_repeat Simple_repeat 1 131 0 528 266 0 0 chr3 215288975 215289144 -12235434 + AluSp SINE Alu 135 303 -10 237 347 122 0 chr3 215289861 215290008 -12234570 + MIR SINE MIR 92 256 -6 454 316 224 13 chr3 215290107 215290496 -12234082 - L3 LINE CR1 -5 1572 1102 2535 67 0 0 chr3 215291551 215291850 -12232728 - AluSc SINE Alu 0 309 11 314 303 83 9 chr3 215292780 215292889 -12231689 + MIR SINE MIR 28 144 -64 210 156 0 0 chr3 215293320 215293365 -12231213 + CT-rich Low_complexity Low_complexity 2 46 0 963 268 112 22 chr3 215293371 215293927 -12230651 - L1MC4 LINE L1 -156 7886 7281 292 287 120 19 chr3 215294573 215294681 -12229897 + L2 LINE L2 3139 3257 -15 206 216 0 0 chr3 215294755 215294792 -12229786 - MIR SINE MIR -215 47 11 625 243 67 43 chr3 215295522 215295732 -12228846 + MIR SINE MIR 48 262 0 476 278 48 43 chr3 215295911 215296098 -12228480 - MIR SINE MIR -16 246 59 309 356 34 11 chr3 215296520 215296697 -12227881 - MIR3 SINE MIR -26 182 2 792 260 147 11 chr3 215296931 215297216 -12227362 + MER5C DNA MER1_type 1 324 0 2150 110 0 0 chr3 215297301 215297608 -12226970 + AluSx SINE Alu 1 307 0 1734 161 24 5 chr3 215297689 215298066 -12226512 + L1PA16 LINE L1 5754 6164 -1 613 80 0 11 chr3 215298148 215298236 -12226342 - L1PA7 LINE L1 -20 6134 6048 243 337 54 33 chr3 215298315 215298407 -12226171 - L2 LINE L2 -18 3254 3161 1396 189 51 0 chr3 215298462 215298758 -12225820 + L1M4 LINE L1 5504 5814 -370 863 272 5 5 chr3 215299390 215299614 -12224964 - MER58A DNA MER1_type 0 224 1 2410 103 0 0 chr3 215299775 215300085 -12224493 + AluSq SINE Alu 3 312 -1 409 328 24 8 chr3 215301786 215301911 -12222667 + MIR3 SINE MIR 70 196 -12 4468 143 13 12 chr3 215302152 215303361 -12221217 + L1PA8A LINE L1 4289 5501 -630 195 327 60 67 chr3 215303990 215304140 -12220438 - L2 LINE L2 -612 2702 2554 188 387 19 9 chr3 215304410 215304516 -12220062 + MIR SINE MIR 40 146 -62 2128 108 0 7 chr3 215304868 215305194 -12219384 + AluSx SINE Alu 1 324 0 309 156 0 0 chr3 215305778 215305855 -12218723 + (TA)n Simple_repeat Simple_repeat 2 78 0 252 348 0 11 chr3 215306135 215306224 -12218354 + CT-rich Low_complexity Low_complexity 3 90 0 21 0 0 0 chr3 215306421 215306442 -12218136 + AT_rich Low_complexity Low_complexity 1 21 0 2643 211 48 16 chr3 215310103 215310846 -12213732 + L1 LINE L1 4314 5080 -1066 423 0 0 0 chr3 215311680 215311727 -12212851 + (TA)n Simple_repeat Simple_repeat 1 47 0 450 0 0 0 chr3 215311932 215311982 -12212596 + (TG)n Simple_repeat Simple_repeat 2 51 0 217 114 0 45 chr3 215312607 215312651 -12211927 + (CAAAA)n Simple_repeat Simple_repeat 4 45 0 317 288 17 34 chr3 215313110 215313228 -12211350 - MER20B DNA MER1_type -667 116 1 886 340 121 39 chr3 215313470 215314397 -12210181 + L2 LINE L2 2192 3271 -1 323 362 9 0 chr3 215314849 215314965 -12209613 - L2 LINE L2 -2 3270 3154 637 290 91 0 chr3 215315455 215315686 -12208892 - MIR SINE MIR 0 262 11 295 324 99 0 chr3 215315909 215316020 -12208558 - Charlie8 DNA MER1_type -2152 265 144 378 0 0 0 chr3 215316032 215316074 -12208504 + (TTA)n Simple_repeat Simple_repeat 2 43 0 306 322 25 25 chr3 215316213 215316331 -12208247 + MIR SINE MIR 32 149 -59 23 0 0 0 chr3 215316356 215316379 -12208199 + AT_rich Low_complexity Low_complexity 1 23 0 185 0 40 0 chr3 215316908 215316933 -12207645 + (TA)n Simple_repeat Simple_repeat 2 27 0 322 171 68 45 chr3 215316936 215317024 -12207554 + L1MC4 LINE L1 6614 6703 -1339 1832 151 7 3 chr3 215317027 215317311 -12207267 - AluSx SINE Alu -27 285 1 203 268 27 107 chr3 215317356 215317468 -12207110 - MER5A DNA MER1_type -6 183 81 519 259 57 57 chr3 215317672 215317919 -12206659 + L1ME LINE L1 5572 5818 -303 * 1535 186 64 77 chr3 215317906 215318565 -12206013 + L1MB3 LINE L1 5559 6183 0 300 158 50 20 chr3 215318811 215318912 -12205666 + (TA)n Simple_repeat Simple_repeat 2 105 0 374 0 22 0 chr3 215319300 215319346 -12205232 + (CA)n Simple_repeat Simple_repeat 1 47 0 234 331 14 74 chr3 215320953 215321101 -12203477 + L2 LINE L2 2942 3080 -192 186 263 89 89 chr3 215321857 215322036 -12202542 - MIR SINE MIR -58 150 8 196 380 132 0 chr3 215324486 215324607 -12199971 - L2 LINE L2 0 3272 3136 207 239 94 94 chr3 215324698 215324836 -12199742 + MIR3 SINE MIR 5 142 -66 470 254 50 50 chr3 215325112 215325293 -12199285 + MIR SINE MIR 82 262 0 245 207 0 35 chr3 215325380 215325438 -12199140 + GA-rich Low_complexity Low_complexity 1 56 0 210 260 60 80 chr3 215325740 215325840 -12198738 + L3 LINE CR1 1262 1359 -218 266 350 100 6 chr3 215326352 215326532 -12198046 - MIR SINE MIR -26 236 40 204 318 45 34 chr3 215326845 215326933 -12197645 + MIR SINE MIR 16 104 -104 1067 119 38 6 chr3 215326934 215327093 -12197485 - AluSg/x SINE Alu -15 297 134 2258 103 7 0 chr3 215327093 215327395 -12197183 - AluSg SINE Alu -6 304 1 557 257 28 21 chr3 215327440 215327584 -12196994 + MER5B DNA MER1_type 2 146 -32 206 214 18 71 chr3 215327589 215327645 -12196933 + L3b LINE CR1 1522 1574 -9 246 214 157 14 chr3 215328948 215329018 -12195560 + L2 LINE L2 3197 3276 -37 180 77 0 0 chr3 215329038 215329064 -12195514 + (TGAA)n Simple_repeat Simple_repeat 1 26 0 7016 58 0 13 chr3 215329075 215330206 -12194372 - L1PA7 LINE L1 0 6154 5029 220 317 30 20 chr3 215331263 215331364 -12193214 - MIR SINE MIR -115 147 46 1900 73 0 0 chr3 215332352 215332600 -12191978 + L1PA6 LINE L1 5906 6153 -1 262 338 13 0 chr3 215332639 215332716 -12191862 - L2 LINE L2 0 3272 3195 2590 42 3 13 chr3 215332802 215333115 -12191463 + AluY SINE Alu 1 310 -1 639 193 0 0 chr3 215333623 215333737 -12190841 - MIR SINE MIR -67 195 82 186 71 0 0 chr3 215337224 215337252 -12187326 + (A)n Simple_repeat Simple_repeat 1 28 0 234 0 0 0 chr3 215337484 215337510 -12187068 + (CA)n Simple_repeat Simple_repeat 1 26 0 229 289 0 12 chr3 215337510 215337593 -12186985 + L1ME4a LINE L1 5935 6016 -105 218 297 81 61 chr3 215338552 215338700 -12185878 - L2 LINE L2 -4 3268 3118 375 98 0 0 chr3 215338868 215338929 -12185649 + (TG)n Simple_repeat Simple_repeat 1 61 0 216 167 0 24 chr3 215339153 215339195 -12185383 + L2 LINE L2 3272 3312 -1 364 357 70 6 chr3 215339302 215339459 -12185119 - MIR3 SINE MIR -23 185 19 288 280 68 30 chr3 215339953 215340132 -12184446 + MIR SINE MIR 30 212 -50 247 350 0 10 chr3 215340414 215340514 -12184064 - MIR3 SINE MIR -101 107 9 201 380 20 20 chr3 215340864 215340964 -12183614 - MIR SINE MIR -62 146 47 24 32 0 0 chr3 215341260 215341291 -12183287 + AT_rich Low_complexity Low_complexity 1 31 0 387 307 7 40 chr3 215341805 215341955 -12182623 - MIR3 SINE MIR -14 194 50 230 274 0 68 chr3 215342334 215342407 -12182171 - L2 LINE L2 -1 3312 3245 571 291 48 68 chr3 215344501 215344752 -12179826 - MIR SINE MIR -6 256 11 2027 280 108 57 chr3 215344815 215346156 -12178422 + L2 LINE L2 1874 3296 -17 231 317 62 43 chr3 215346368 215346529 -12178049 + MIR3 SINE MIR 12 175 -33 1821 206 83 28 chr3 215348073 215348530 -12176048 + MLT1D LTR MaLR 21 502 -3 300 344 10 0 chr3 215348817 215348913 -12175665 - MIR3 SINE MIR -8 200 104 182 37 37 0 chr3 215348944 215348971 -12175607 + (TTTG)n Simple_repeat Simple_repeat 3 30 0 2284 120 11 3 chr3 215349540 215349890 -12174688 + THE1A LTR MaLR 1 353 -2 26 0 0 0 chr3 215349953 215349979 -12174599 + AT_rich Low_complexity Low_complexity 1 26 0 2367 86 0 7 chr3 215350373 215350677 -12173901 - AluSc SINE Alu -7 302 1 210 37 0 0 chr3 215351556 215351583 -12172995 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1378 142 23 4 chr3 215351814 215352074 -12172504 - L1MA5A LINE L1 -2 6295 6031 341 254 53 53 chr3 215352676 215352790 -12171788 - MIR3 SINE MIR -52 156 43 191 294 20 0 chr3 215353295 215353346 -12171232 + MIR SINE MIR 94 145 -63 815 247 80 34 chr3 215354703 215354942 -12169636 + MIR SINE MIR 1 250 -12 271 269 0 0 chr3 215354948 215355015 -12169563 + (CAATA)n Simple_repeat Simple_repeat 2 68 0 1074 322 137 8 chr3 215355015 215355540 -12169038 + MLT1G1 LTR MaLR 3 595 0 7291 11 0 0 chr3 215355708 215356531 -12168047 - L1HS LINE L1 -1 6154 5332 186 315 14 27 chr3 215356654 215356727 -12167851 - MIR SINE MIR -107 101 30 213 290 116 58 chr3 215356766 215356921 -12167657 + MIR3 SINE MIR 38 201 -7 1084 318 57 35 chr3 215357093 215357672 -12166906 + MLT1E LTR MaLR 1 592 -1 228 356 93 0 chr3 215358118 215358236 -12166342 - MIR3 SINE MIR -70 138 10 256 266 114 61 chr3 215358694 215358858 -12165720 - MIR SINE MIR -50 212 43 834 102 43 7 chr3 215358894 215359049 -12165529 + L1MA8 LINE L1 6107 6270 -21 1946 147 0 0 chr3 215359049 215359342 -12165236 - AluSq SINE Alu -2 311 19 834 102 43 7 chr3 215359342 215359364 -12165214 + L1MA8 LINE L1 6270 6290 -1 532 224 186 0 chr3 215359630 215359786 -12164792 + MER5A DNA MER1_type 5 189 0 709 296 118 0 chr3 215360263 215360466 -12164112 - MIR SINE MIR -31 231 5 192 293 27 27 chr3 215360725 215360800 -12163778 - MIR3 SINE MIR -21 187 113 344 302 81 41 chr3 215361392 215361564 -12163014 - L3 LINE CR1 -126 1451 1273 4115 213 66 3 chr3 215361781 215363391 -12161187 - L1MB7 LINE L1 -1 6183 4471 2370 95 0 0 chr3 215364666 215364972 -12159606 + AluSp SINE Alu 1 306 -7 2230 255 68 68 chr3 215368488 215368523 -12156055 - MER21B LTR ERV1 -21 842 808 261 0 0 0 chr3 215368523 215368552 -12156026 + (ATTG)n Simple_repeat Simple_repeat 4 32 0 1764 152 30 0 chr3 215368552 215368701 -12155877 - AluSx SINE Alu -32 280 118 243 0 0 0 chr3 215368701 215368728 -12155850 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 1764 152 30 0 chr3 215368728 215368848 -12155730 - AluSx SINE Alu -194 118 3 2230 255 68 68 chr3 215368848 215369634 -12154944 - MER21B LTR ERV1 -53 810 20 26 30 0 0 chr3 215369719 215369752 -12154826 + AT_rich Low_complexity Low_complexity 1 33 0 373 267 38 0 chr3 215370403 215370508 -12154070 + MIR3 SINE MIR 90 198 -10 180 269 0 0 chr3 215371212 215371264 -12153314 + L2 LINE L2 3221 3272 0 1141 130 0 6 chr3 215372648 215372809 -12151769 + AluSc SINE Alu 1 160 -149 197 271 0 0 chr3 215372810 215372858 -12151720 + MIR3 SINE MIR 149 196 -12 902 117 0 0 chr3 215373097 215373225 -12151353 + Alu SINE Alu 171 298 -13 180 0 0 0 chr3 215374053 215374073 -12150505 + (TAAAAA)n Simple_repeat Simple_repeat 3 22 0 325 239 57 11 chr3 215375692 215375780 -12148798 + LTR33A LTR ERVL 431 522 -1 264 355 129 0 chr3 215375857 215376043 -12148535 - L2 LINE L2 -4 3268 3059 360 287 12 60 chr3 215376666 215376833 -12147745 + MIR SINE MIR 54 212 -50 204 125 0 0 chr3 215377426 215377458 -12147120 + (T)n Simple_repeat Simple_repeat 1 32 0 2271 116 0 0 chr3 215377472 215377773 -12146805 - AluSx SINE Alu -11 301 1 306 106 0 0 chr3 215378110 215378157 -12146421 + (CA)n Simple_repeat Simple_repeat 2 48 0 2527 61 0 0 chr3 215378847 215379142 -12145436 + AluY SINE Alu 1 295 -16 870 202 118 8 chr3 215379383 215379621 -12144957 + L1M3e LINE L1 2 265 -6765 1781 180 12 9 chr3 215379665 215379999 -12144579 + L1MA9 LINE L1 5662 5996 -316 1749 94 4 0 chr3 215380270 215380504 -12144074 - AluSg/x SINE Alu -1 309 75 2134 119 13 0 chr3 215381063 215381365 -12143213 + AluSx SINE Alu 7 312 0 306 326 132 35 chr3 215381756 215382075 -12142503 + L1MC/D LINE L1 5404 5753 -2055 2351 95 7 0 chr3 215382383 215382689 -12141889 + AluSg SINE Alu 1 308 -2 573 28 0 0 chr3 215382698 215382769 -12141809 + (GGAA)n Simple_repeat Simple_repeat 4 74 0 1961 123 3 3 chr3 215384442 215384727 -12139851 + AluSx SINE Alu 1 285 -27 485 239 7 0 chr3 215384727 215384865 -12139713 + (CATA)n Simple_repeat Simple_repeat 1 139 0 421 238 84 14 chr3 215385003 215385146 -12139432 + L2 LINE L2 3161 3313 0 253 243 9 90 chr3 215385843 215385954 -12138624 + MIR SINE MIR 101 202 -60 238 339 8 39 chr3 215386935 215387065 -12137513 - LTR16C LTR ERVL -1 490 365 994 150 7 0 chr3 215387065 215387218 -12137360 + THE1C LTR MaLR 2 155 -220 22 0 0 0 chr3 215387449 215387471 -12137107 + AT_rich Low_complexity Low_complexity 1 22 0 1527 300 74 33 chr3 215387799 215388639 -12135939 - L1MC4 LINE L1 0 8042 7169 2078 155 63 39 chr3 215389468 215389769 -12134809 - MSTB LTR MaLR -2 424 109 2338 136 14 8 chr3 215389769 215390122 -12134456 + THE1A LTR MaLR 1 355 0 2078 155 63 39 chr3 215390122 215390233 -12134345 - MSTB LTR MaLR -317 109 2 297 245 411 6 chr3 215390404 215390567 -12134011 + MIR SINE MIR 31 259 -3 730 250 12 6 chr3 215390760 215390928 -12133650 - MER5A DNA MER1_type 0 189 21 2242 209 27 2 chr3 215392149 215392561 -12132017 - MSTB LTR MaLR -4 422 1 2132 109 19 16 chr3 215392909 215393220 -12131358 + AluSq SINE Alu 2 313 0 252 298 12 12 chr3 215393362 215393446 -12131132 + GA-rich Low_complexity Low_complexity 5 88 0 38 0 0 0 chr3 215393998 215394036 -12130542 + AT_rich Low_complexity Low_complexity 1 38 0 1875 124 21 25 chr3 215395058 215395378 -12129200 - AluSq SINE Alu 0 319 1 221 323 150 8 chr3 215395514 215395641 -12128937 - MIR3 SINE MIR -11 197 53 411 323 20 31 chr3 215395875 215396070 -12128508 - MIR SINE MIR -50 212 20 281 67 0 22 chr3 215396314 215396359 -12128219 + (GGGA)n Simple_repeat Simple_repeat 4 47 0 242 196 0 0 chr3 215396525 215396576 -12128002 + G-rich Low_complexity Low_complexity 1 51 0 466 154 27 34 chr3 215396576 215396725 -12127853 + GA-rich Low_complexity Low_complexity 1 148 0 194 169 124 135 chr3 215397268 215397357 -12127221 - MIR SINE MIR -121 141 54 921 165 0 0 chr3 215397487 215397620 -12126958 + FLAM_C SINE Alu 1 133 0 200 254 0 14 chr3 215397684 215397755 -12126823 + GA-rich Low_complexity Low_complexity 2 71 0 304 343 61 0 chr3 215397832 215397931 -12126647 + MER5A DNA MER1_type 20 124 -65 218 346 29 22 chr3 215398453 215398589 -12125989 + MIR SINE MIR 106 242 -20 259 301 117 107 chr3 215399529 215399735 -12124843 + L2 LINE L2 2946 3153 -119 873 241 64 21 chr3 215399833 215400069 -12124509 + MIR SINE MIR 1 246 -16 202 284 138 26 chr3 215400159 215400275 -12124303 - L2 LINE L2 -2 3311 3183 2404 85 3 0 chr3 215402837 215403144 -12121434 + AluSg SINE Alu 1 308 -2 261 163 0 0 chr3 215403294 215403343 -12121235 + (TG)n Simple_repeat Simple_repeat 2 50 0 194 319 124 26 chr3 215404566 215404679 -12119899 + MIR SINE MIR 32 155 -107 286 313 78 12 chr3 215405452 215405618 -12118960 + MIR3 SINE MIR 28 204 -4 201 241 0 19 chr3 215406040 215406094 -12118484 + GA-rich Low_complexity Low_complexity 6 58 0 192 313 0 0 chr3 215406552 215406600 -12117978 + L2 LINE L2 3210 3257 -15 338 305 177 7 chr3 215406745 215406886 -12117692 + MIR3 SINE MIR 44 208 0 184 353 47 0 chr3 215407562 215407647 -12116931 - MIR3 SINE MIR -37 171 83 184 337 45 22 chr3 215408270 215408359 -12116219 - MIR SINE MIR -108 154 64 24 0 0 0 chr3 215408936 215408960 -12115618 + AT_rich Low_complexity Low_complexity 1 24 0 222 368 0 15 chr3 215409073 215409141 -12115437 + MIR3 SINE MIR 9 75 -133 611 242 149 0 chr3 215409369 215409530 -12115048 - MER5A DNA MER1_type -1 188 4 2285 115 0 3 chr3 215409696 215410009 -12114569 + AluSq SINE Alu 1 312 -1 249 286 0 0 chr3 215410023 215410086 -12114492 - MIR SINE MIR -124 138 76 335 311 25 25 chr3 215410232 215410351 -12114227 + MIR3 SINE MIR 70 188 -20 343 302 43 35 chr3 215410981 215411097 -12113481 + MIR SINE MIR 25 141 -121 2325 93 3 16 chr3 215411580 215411892 -12112686 + AluSx SINE Alu 1 308 -4 1266 158 0 68 chr3 215412945 215413179 -12111399 + AluJo SINE Alu 1 218 -94 257 128 21 0 chr3 215413183 215413230 -12111348 + A-rich Low_complexity Low_complexity 3 50 0 455 289 52 74 chr3 215413299 215413666 -12110912 + HAL1b LINE L1 309 667 -681 2050 144 0 3 chr3 215413972 215414277 -12110301 - AluSq SINE Alu -9 304 1 324 102 0 0 chr3 215415093 215415142 -12109436 + (CTG)n Simple_repeat Simple_repeat 1 49 0 2396 75 3 23 chr3 215415630 215415938 -12108640 + AluY SINE Alu 1 302 -9 1453 138 0 13 chr3 215416026 215416251 -12108327 + AluSx SINE Alu 1 222 -90 232 125 0 0 chr3 215416253 215416293 -12108285 + AluSx SINE Alu 260 299 -2 2198 92 0 7 chr3 215417753 215418036 -12106542 + AluSg SINE Alu 1 312 0 280 0 0 0 chr3 215418036 215418067 -12106511 + (TAAA)n Simple_repeat Simple_repeat 2 104 0 301 194 0 32 chr3 215418722 215418784 -12105794 + MIR3 SINE MIR 147 206 -2 405 322 135 32 chr3 215420070 215420418 -12104160 + L2 LINE L2 2930 3313 0 418 99 28 0 chr3 215420575 215420646 -12103932 + L1MA3 LINE L1 6232 6304 -1 430 198 75 103 chr3 215420737 215420875 -12103703 - L1MC5 LINE L1 -66 7895 7766 2721 13 0 0 chr3 215420875 215421174 -12103404 - AluYa5 SINE Alu -12 299 1 430 198 75 103 chr3 215421174 215421287 -12103291 - L1MC5 LINE L1 -195 7766 7651 718 250 16 5 chr3 215423651 215423835 -12100743 - MER5A DNA MER1_type -3 186 1 469 262 21 102 chr3 215423999 215424186 -12100392 + MER5B DNA MER1_type 1 172 -6 1842 149 136 16 chr3 215424390 215424772 -12099806 - MSTA LTR MaLR 0 428 1 193 316 0 0 chr3 215424858 215424915 -12099663 - MIR3 SINE MIR -3 205 149 * 232 233 33 17 chr3 215424909 215424969 -12099609 - MER5A DNA MER1_type -126 63 3 229 368 93 16 chr3 215425413 215425671 -12098907 + L3b LINE CR1 1103 1380 -203 306 200 46 0 chr3 215427268 215427333 -12097245 - MER5A DNA MER1_type -84 105 38 2091 117 7 0 chr3 215427639 215427946 -12096632 + AluSg1 SINE Alu 1 309 0 203 339 115 8 chr3 215428026 215428156 -12096422 + MIR SINE MIR 55 198 -64 281 265 111 87 chr3 215428156 215428409 -12096169 + MER112 DNA MER1_type 1 259 -1 371 281 104 34 chr3 215430052 215430392 -12094186 + L1ME LINE L1 5463 5777 -344 618 317 40 60 chr3 215430393 215430743 -12093835 - L2 LINE L2 -7 3306 2964 2405 62 0 3 chr3 215430763 215431069 -12093509 - AluY SINE Alu -6 305 1 195 302 177 0 chr3 215432398 215432494 -12092084 + L2 LINE L2 3140 3252 -20 343 322 29 23 chr3 215433063 215433237 -12091341 + MER5B DNA MER1_type 4 178 0 1059 258 19 23 chr3 215433245 215433555 -12091023 + L1MC4a LINE L1 7500 7808 0 994 177 10 5 chr3 215435395 215435587 -12088991 + L1M4 LINE L1 4673 4865 -1281 229 312 65 21 chr3 215436112 215436205 -12088373 + L2 LINE L2 3141 3237 -35 446 75 15 0 chr3 215436344 215436411 -12088167 + (TG)n Simple_repeat Simple_repeat 1 68 0 220 275 77 33 chr3 215436576 215436667 -12087911 + MIR SINE MIR 70 164 -98 328 122 0 0 chr3 215436718 215436767 -12087811 + U5 snRNA snRNA 1 49 -67 1053 210 19 5 chr3 215438199 215438413 -12086165 + MER58A DNA MER1_type 5 221 -3 182 361 69 0 chr3 215438616 215438688 -12085890 - L2 LINE L2 -81 3191 3115 1715 222 27 43 chr3 215438699 215439212 -12085366 - MLT1D LTR MaLR 0 505 1 25 31 0 0 chr3 215439369 215439401 -12085177 + AT_rich Low_complexity Low_complexity 1 32 0 229 349 47 0 chr3 215439553 215439639 -12084939 - MIR SINE MIR -91 171 82 306 0 0 0 chr3 215439838 215439872 -12084706 + (TA)n Simple_repeat Simple_repeat 2 35 0 320 309 57 51 chr3 215440086 215440261 -12084317 + L3 LINE CR1 1401 1576 -1 21 0 0 0 chr3 215441606 215441627 -12082951 + AT_rich Low_complexity Low_complexity 1 21 0 620 186 91 91 chr3 215442297 215442496 -12082082 + MER3 DNA MER1_type 4 202 -7 1062 187 41 90 chr3 215443306 215443574 -12081004 + AluJo SINE Alu 33 287 -25 1976 130 13 0 chr3 215443654 215443953 -12080625 - AluSx SINE Alu -9 303 1 423 0 0 0 chr3 215444142 215444189 -12080389 + (CA)n Simple_repeat Simple_repeat 2 48 0 369 0 0 0 chr3 215444192 215444233 -12080345 + (TA)n Simple_repeat Simple_repeat 1 41 0 23 0 0 0 chr3 215444360 215444383 -12080195 + AT_rich Low_complexity Low_complexity 1 23 0 224 364 0 0 chr3 215444438 215444526 -12080052 + MIR SINE MIR 57 144 -118 189 0 0 0 chr3 215444526 215444547 -12080031 + (TAA)n Simple_repeat Simple_repeat 2 22 0 319 261 93 31 chr3 215444724 215444885 -12079693 + L1ME3A LINE L1 5511 5681 -440 543 239 97 47 chr3 215445077 215445347 -12079231 + L1ME3A LINE L1 5872 6169 -1 21 0 0 0 chr3 215445435 215445456 -12079122 + AT_rich Low_complexity Low_complexity 1 21 0 635 289 208 27 chr3 215445487 215445934 -12078644 - L3 LINE CR1 -9 1568 1041 198 103 0 0 chr3 215447892 215447921 -12076657 + (GAAA)n Simple_repeat Simple_repeat 4 32 0 542 225 28 73 chr3 215448063 215448281 -12076297 + L1MC5 LINE L1 7708 7915 -46 1995 105 0 59 chr3 215448863 215449167 -12075411 - AluSg SINE Alu -24 286 1 1403 206 41 0 chr3 215450595 215450886 -12073692 + AluJo SINE Alu 1 303 -9 2266 107 20 6 chr3 215451874 215452220 -12072358 + THE1A LTR MaLR 5 355 0 838 318 29 0 chr3 215452524 215452769 -12071809 + MIR SINE MIR 1 252 -10 200 319 87 51 chr3 215452850 215452988 -12071590 + MIR SINE MIR 20 162 -100 250 369 58 35 chr3 215452998 215453258 -12071320 - L2 LINE L2 -182 3090 2825 332 111 0 19 chr3 215453417 215453471 -12071107 + Alu SINE Alu 244 296 -6 238 264 64 45 chr3 215454619 215454729 -12069849 + L3 LINE CR1 1079 1190 -387 262 159 290 0 chr3 215454834 215454903 -12069675 + L2 LINE L2 3225 3313 0 421 330 46 82 chr3 215454915 215455327 -12069251 + L2 LINE L2 2875 3271 -1 252 309 8 43 chr3 215455568 215455705 -12068873 + L1ME LINE L1 5436 5549 -617 3437 126 2 7 chr3 215456156 215456696 -12067882 + L1PB1 LINE L1 5612 6148 -3 191 36 36 0 chr3 215456811 215456839 -12067739 + (GA)n Simple_repeat Simple_repeat 1 29 0 270 0 0 0 chr3 215456960 215456990 -12067588 + (CA)n Simple_repeat Simple_repeat 2 31 0 27 29 0 0 chr3 215457197 215457231 -12067347 + AT_rich Low_complexity Low_complexity 1 34 0 2028 130 17 0 chr3 215457305 215457604 -12066974 + AluSx SINE Alu 2 305 -7 321 131 0 0 chr3 215457745 215457806 -12066772 + (TG)n Simple_repeat Simple_repeat 2 62 0 287 305 145 8 chr3 215458433 215458564 -12066014 - L2 LINE L2 -587 2727 2579 298 251 151 91 chr3 215459345 215459544 -12065034 + Charlie8 DNA MER1_type 149 359 -2058 2053 136 0 3 chr3 215459557 215459852 -12064726 - AluSx SINE Alu -18 294 1 24 32 0 0 chr3 215460334 215460365 -12064213 + AT_rich Low_complexity Low_complexity 1 31 0 219 167 0 0 chr3 215460980 215461022 -12063556 + (TA)n Simple_repeat Simple_repeat 1 42 0 551 241 71 18 chr3 215461477 215461647 -12062931 - MIR SINE MIR -70 192 14 180 0 0 0 chr3 215462313 215462333 -12062245 + (CA)n Simple_repeat Simple_repeat 1 20 0 500 283 38 27 chr3 215462876 215463060 -12061518 - MIR SINE MIR -2 260 75 213 260 40 0 chr3 215463058 215463108 -12061470 - L2 LINE L2 -7 3265 3214 * 246 326 124 0 chr3 215463491 215463580 -12060998 + L2 LINE L2 3149 3248 -24 187 250 0 0 chr3 215464402 215464438 -12060140 - L2 LINE L2 -10 3262 3227 598 222 117 18 chr3 215464737 215464882 -12059696 + MIR SINE MIR 31 197 -65 423 0 0 0 chr3 215464882 215464929 -12059649 + (TG)n Simple_repeat Simple_repeat 2 48 0 598 222 117 18 chr3 215464929 215464954 -12059624 + MIR SINE MIR 197 218 -44 227 293 103 52 chr3 215466843 215466959 -12057619 + MIR SINE MIR 23 144 -64 190 357 14 0 chr3 215468394 215468464 -12056114 + MIR3 SINE MIR 132 202 -6 183 339 17 0 chr3 215468449 215468508 -12056070 - MIR3 SINE MIR -9 199 140 * 641 166 26 21 chr3 215469474 215469718 -12054860 + CT-rich Low_complexity Low_complexity 1 245 0 262 306 24 35 chr3 215470303 215470388 -12054190 + L2 LINE L2 3189 3272 0 417 335 37 12 chr3 215471037 215471198 -12053380 + MIR SINE MIR 20 184 -78 283 305 21 0 chr3 215471489 215471584 -12052994 - MIR3 SINE MIR 0 208 112 307 319 68 39 chr3 215473552 215473759 -12050819 + L3 LINE CR1 1198 1410 -167 269 319 114 6 chr3 215474482 215474648 -12049930 + L3 LINE CR1 1347 1530 -47 30 0 0 0 chr3 215474675 215474705 -12049873 + AT_rich Low_complexity Low_complexity 1 30 0 433 236 18 36 chr3 215474708 215474818 -12049760 + MER5B DNA MER1_type 70 177 -1 5757 102 1 0 chr3 215474918 215475700 -12048878 + L1PA7 LINE L1 11 793 -5668 * 25213 93 5 19 chr3 215475697 215480323 -12044255 + L1PA7 LINE L1 1892 6456 -13 405 0 0 0 chr3 215480327 215480372 -12044206 + (CA)n Simple_repeat Simple_repeat 2 46 0 250 339 58 16 chr3 215482136 215482257 -12042321 + MIR SINE MIR 20 145 -117 22 35 0 0 chr3 215482367 215482396 -12042182 + AT_rich Low_complexity Low_complexity 1 29 0 21 36 0 0 chr3 215482839 215482867 -12041711 + AT_rich Low_complexity Low_complexity 1 28 0 29 47 0 0 chr3 215483165 215483208 -12041370 + AT_rich Low_complexity Low_complexity 1 43 0 1922 132 31 0 chr3 215483381 215483670 -12040908 - AluSx SINE Alu -9 303 6 246 293 79 71 chr3 215483676 215483816 -12040762 - MIR SINE MIR -109 153 13 256 272 34 16 chr3 215484729 215484820 -12039758 + MIR3 SINE MIR 5 93 -115 314 266 14 50 chr3 215485825 215485964 -12038614 + L2 LINE L2 2926 3059 -213 317 195 56 191 chr3 215486805 215487020 -12037558 - MER5A DNA MER1_type -1 188 3 2807 236 63 37 chr3 215487181 215488106 -12036472 - L1MD2 LINE L1 -30 6329 5376 254 370 0 12 chr3 215488611 215488692 -12035886 + MIR3 SINE MIR 120 199 -9 1046 235 22 0 chr3 215488809 215489039 -12035539 - MER46A DNA MER2_type 0 236 2 23 105 0 0 chr3 215489039 215489125 -12035453 + AT_rich Low_complexity Low_complexity 1 86 0 212 179 0 0 chr3 215489131 215489170 -12035408 + (TTA)n Simple_repeat Simple_repeat 3 41 0 350 339 0 8 chr3 215489174 215489292 -12035286 + L2 LINE L2 3193 3309 -4 226 360 40 24 chr3 215489337 215489462 -12035116 - MIR SINE MIR -50 212 86 180 152 0 0 chr3 215491053 215491086 -12033492 + GA-rich Low_complexity Low_complexity 2 34 0 360 43 0 0 chr3 215491287 215491333 -12033245 + (GA)n Simple_repeat Simple_repeat 2 47 0 313 111 0 0 chr3 215491336 215491381 -12033197 - MADE1 DNA Mariner 0 80 36 2276 96 49 0 chr3 215491801 215492145 -12032433 - L1PB2 LINE L1 -436 5715 5355 2780 83 40 0 chr3 215492145 215492538 -12032040 + L1PB2 LINE L1 5741 6151 0 361 299 61 34 chr3 215493091 215493238 -12031340 - L2 LINE L2 0 3272 3122 245 337 122 23 chr3 215493318 215493493 -12031085 + MIR3 SINE MIR 3 193 -15 2190 111 10 0 chr3 215495198 215495505 -12029073 + AluSp SINE Alu 1 310 -3 3396 170 38 19 chr3 215496121 215496982 -12027596 - L1MC1 LINE L1 -218 6115 5194 1779 151 51 33 chr3 215498929 215499260 -12025318 - MER1B DNA MER1_type 0 337 1 324 48 0 0 chr3 215499835 215499877 -12024701 + (TG)n Simple_repeat Simple_repeat 1 42 0 2327 90 6 10 chr3 215500688 215501000 -12023578 - AluSq SINE Alu -2 311 1 277 260 0 40 chr3 215501182 215501282 -12023296 - L3 LINE CR1 -695 882 787 235 330 82 10 chr3 215501682 215501779 -12022799 + MIR3 SINE MIR 3 106 -102 396 273 16 16 chr3 215501904 215502025 -12022553 - L2 LINE L2 -3 3310 3190 2440 68 0 0 chr3 215502436 215502729 -12021849 + AluY SINE Alu 1 293 -18 238 288 166 44 chr3 215502739 215502900 -12021678 - MIR SINE MIR -51 211 34 289 152 0 0 chr3 215504070 215504116 -12020462 + U2 snRNA snRNA 1 46 -142 5305 58 26 21 chr3 215504478 215504534 -12020044 + L1PA5 LINE L1 5423 5477 -677 2515 67 0 0 chr3 215504534 215504834 -12019744 + AluY SINE Alu 1 300 -11 5305 58 26 21 chr3 215504834 215505502 -12019076 + L1PA5 LINE L1 5477 6151 -3 23 33 0 0 chr3 215505502 215505532 -12019046 + AT_rich Low_complexity Low_complexity 1 30 0 258 281 82 82 chr3 215505539 215505685 -12018893 - MIR3 SINE MIR -19 189 44 183 42 0 0 chr3 215508465 215508489 -12016089 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 26 30 0 0 chr3 215508633 215508666 -12015912 + AT_rich Low_complexity Low_complexity 1 33 0 198 71 0 0 chr3 215509117 215509145 -12015433 + (T)n Simple_repeat Simple_repeat 1 28 0 586 309 77 18 chr3 215509835 215510055 -12014523 - MIR SINE MIR -10 252 20 440 372 17 0 chr3 215510803 215510975 -12013603 + MIR3 SINE MIR 34 208 0 1971 239 85 22 chr3 215511960 215512512 -12012066 + MLT1E LTR MaLR 7 593 0 213 405 0 0 chr3 215513763 215513842 -12010736 - MIR SINE MIR -164 98 20 218 95 24 0 chr3 215513860 215513902 -12010676 + (CATA)n Simple_repeat Simple_repeat 1 43 0 192 314 38 57 chr3 215513904 215514009 -12010569 - L2 LINE L2 -8 3264 3162 271 316 129 7 chr3 215514119 215514258 -12010320 + MIR SINE MIR 92 247 -15 227 305 77 73 chr3 215514333 215514498 -12010080 + MIR3 SINE MIR 12 176 -65 396 0 0 0 chr3 215514757 215514801 -12009777 + (TG)n Simple_repeat Simple_repeat 1 44 0 225 226 0 38 chr3 215515369 215515422 -12009156 + CT-rich Low_complexity Low_complexity 1 51 0 2337 95 3 0 chr3 215516230 215516534 -12008044 - AluSc SINE Alu -4 305 1 218 209 23 0 chr3 215516886 215516929 -12007649 + GA-rich Low_complexity Low_complexity 1 44 0 469 270 35 0 chr3 215517141 215517256 -12007322 + L2 LINE L2 3195 3313 0 386 285 74 57 chr3 215517261 215517436 -12007142 - MIR SINE MIR -59 149 20 687 240 111 31 chr3 215520216 215520441 -12004137 - MIR SINE MIR -12 250 8 257 262 78 50 chr3 215521297 215521438 -12003140 + MIR SINE MIR 107 251 -11 27 0 0 0 chr3 215521446 215521473 -12003105 + AT_rich Low_complexity Low_complexity 1 27 0 502 298 36 12 chr3 215521775 215521943 -12002635 - MER5B DNA MER1_type -2 176 5 205 176 0 118 chr3 215522397 215522448 -12002130 - MIR3 SINE MIR -40 168 124 1696 139 99 12 chr3 215522579 215522924 -12001654 + THE1C LTR MaLR 1 375 0 1706 63 0 5 chr3 215523016 215523223 -12001355 - AluY SINE Alu -13 298 93 205 250 0 0 chr3 215523697 215523737 -12000841 - L2 LINE L2 -7 3265 3226 433 330 35 0 chr3 215523941 215524056 -12000522 - L2 LINE L2 -8 3264 3146 253 218 0 18 chr3 215524063 215524118 -12000460 + L2 LINE L2 3137 3190 -82 945 62 0 0 chr3 215524724 215524852 -11999726 - L1MA6 LINE L1 -319 5981 5854 278 224 0 0 chr3 215525001 215525050 -11999528 - MIR SINE MIR -85 123 75 335 341 53 24 chr3 215525347 215525517 -11999061 - MIR SINE MIR -78 184 10 315 340 78 7 chr3 215525963 215526104 -11998474 + MIR SINE MIR 7 157 -105 364 299 180 0 chr3 215526513 215526707 -11997871 + MIR SINE MIR 5 233 -29 340 307 18 18 chr3 215526879 215526993 -11997585 - MIR SINE MIR -76 132 19 184 292 0 0 chr3 215527931 215527979 -11996599 + L2 LINE L2 3266 3313 0 538 307 13 0 chr3 215528439 215528589 -11995989 + MIR SINE MIR 32 183 -79 310 344 20 46 chr3 215529156 215529307 -11995271 + MIR3 SINE MIR 46 192 -16 22 70 0 0 chr3 215529528 215529571 -11995007 + AT_rich Low_complexity Low_complexity 1 43 0 2274 91 19 7 chr3 215529661 215529969 -11994609 + AluSp SINE Alu 1 312 -1 211 260 110 27 chr3 215529979 215530052 -11994526 + MER5A DNA MER1_type 8 86 -103 417 237 231 6 chr3 215530238 215530411 -11994167 + MIR SINE MIR 32 243 -19 209 366 67 15 chr3 215530851 215530985 -11993593 - MIR SINE MIR -117 145 5 248 270 71 41 chr3 215531128 215531237 -11993341 + MIR SINE MIR 6 109 -99 219 36 0 0 chr3 215531463 215531491 -11993087 + (TC)n Simple_repeat Simple_repeat 2 29 0 600 108 0 7 chr3 215531603 215531827 -11992751 + AluSx SINE Alu 13 282 -27 379 376 27 0 chr3 215531832 215531981 -11992597 - MIR SINE MIR -84 178 26 304 338 30 0 chr3 215532889 215533022 -11991556 - L1ME4a LINE L1 -12 6109 5973 315 315 0 0 chr3 215536185 215536274 -11988304 - MIR SINE MIR -65 143 55 566 143 19 0 chr3 215536812 215536917 -11987661 - MLT1J2 LTR MaLR -341 109 3 2354 90 0 31 chr3 215537175 215537496 -11987082 - AluY SINE Alu 0 311 1 218 152 0 22 chr3 215537550 215537596 -11986982 + CT-rich Low_complexity Low_complexity 1 45 0 180 317 79 10 chr3 215539587 215539688 -11984890 - MIR SINE MIR -66 196 89 234 0 0 0 chr3 215539998 215540024 -11984554 + (TTG)n Simple_repeat Simple_repeat 2 27 0 1726 164 26 32 chr3 215540847 215541157 -11983421 - AluSx SINE Alu -4 308 1 206 366 0 28 chr3 215541165 215541236 -11983342 + L2 LINE L2 3116 3184 -88 755 101 17 8 chr3 215542403 215542522 -11982056 - L1PB2 LINE L1 0 6151 6032 315 213 9 37 chr3 215542617 215542725 -11981853 - L1PB2 LINE L1 -120 6031 5927 385 261 118 17 chr3 215543302 215543421 -11981157 - MIR3 SINE MIR -63 145 15 1272 141 0 70 chr3 215543899 215544112 -11980466 + AluJb SINE Alu 84 281 -31 217 0 0 57 chr3 215544112 215544147 -11980431 + (TTTTTG)n Simple_repeat Simple_repeat 3 35 0 2160 109 0 0 chr3 215544579 215544897 -11979681 - AluSx SINE Alu 0 318 1 792 260 147 11 chr3 215544982 215545267 -11979311 - MER5C DNA MER1_type 0 324 1 309 356 34 11 chr3 215545501 215545678 -11978900 + MIR3 SINE MIR 2 182 -26 464 283 48 43 chr3 215546099 215546286 -11978292 + MIR SINE MIR 59 246 -16 625 243 67 43 chr3 215546465 215546675 -11977903 - MIR SINE MIR 0 262 48 206 216 0 0 chr3 215547405 215547442 -11977136 + MIR SINE MIR 11 47 -215 292 287 120 19 chr3 215547516 215547624 -11976954 - L2 LINE L2 -15 3257 3139 960 277 106 16 chr3 215548270 215548826 -11975752 + L1MC4 LINE L1 7281 7886 -156 210 156 0 0 chr3 215548832 215548877 -11975701 + GA-rich Low_complexity Low_complexity 2 46 0 314 303 83 9 chr3 215549308 215549417 -11975161 - MIR SINE MIR -64 144 28 2432 81 0 0 chr3 215550347 215550645 -11973933 + AluSc SINE Alu 11 308 -1 398 324 224 13 chr3 215551701 215552090 -11972488 + L3 LINE CR1 1102 1572 -5 237 347 122 0 chr3 215552189 215552336 -11972242 - MIR SINE MIR -6 256 92 2154 111 0 13 chr3 215553054 215553361 -11971217 - AluSp SINE Alu -10 303 1 256 288 180 0 chr3 215553390 215553501 -11971077 - MIR3 SINE MIR 0 208 78 444 275 38 31 chr3 215553800 215553960 -11970618 + L2 LINE L2 3152 3312 -1 449 250 138 20 chr3 215554072 215554224 -11970354 - MIR3 SINE MIR -3 205 36 2136 138 0 0 chr3 215555150 215555454 -11969124 - AluSg SINE Alu -6 304 1 241 309 10 41 chr3 215555476 215555573 -11969005 - L2 LINE L2 0 3313 3220 21 0 0 0 chr3 215555852 215555873 -11968705 + AT_rich Low_complexity Low_complexity 1 21 0 334 214 10 29 chr3 215556293 215556396 -11968182 + MER113 DNA MER1_type? 15 115 -406 21 0 0 0 chr3 215556497 215556518 -11968060 + AT_rich Low_complexity Low_complexity 1 21 0 1522 204 0 11 chr3 215556534 215556825 -11967753 + AluJb SINE Alu 17 304 0 183 327 119 10 chr3 215557081 215557182 -11967396 + MIR3 SINE MIR 66 177 -31 207 283 17 17 chr3 215557684 215557744 -11966834 + MIR3 SINE MIR 2 61 -147 378 282 213 5 chr3 215559329 215559517 -11965061 - MIR SINE MIR 0 262 36 245 274 39 59 chr3 215560887 215560989 -11963589 - L2 LINE L2 -1 3312 3213 332 377 68 19 chr3 215561236 215561501 -11963077 - L2 LINE L2 -463 2851 2574 513 259 96 74 chr3 215561672 215561942 -11962636 - L2 LINE L2 -16 3297 3022 266 282 118 0 chr3 215562191 215562301 -11962277 - MIR3 SINE MIR -8 200 78 554 253 76 40 chr3 215562367 215562565 -11962013 + MIR SINE MIR 39 243 -19 27 49 0 0 chr3 215562737 215562778 -11961800 + AT_rich Low_complexity Low_complexity 1 41 0 557 282 98 0 chr3 215562922 215563131 -11961447 - MIR SINE MIR -12 250 12 201 256 0 0 chr3 215563241 215563284 -11961294 - MIR3 SINE MIR 0 208 166 320 279 36 120 chr3 215564285 215564706 -11959872 - L2 LINE L2 -209 3063 2677 1633 167 3 46 chr3 215564946 215565252 -11959326 + AluJo SINE Alu 1 293 -19 218 260 82 96 chr3 215565488 215565634 -11958944 - MIR3 SINE MIR -28 180 37 1544 233 35 28 chr3 215565923 215566391 -11958187 - MLT1D LTR MaLR -31 536 7 2145 104 0 3 chr3 215566751 215567073 -11957505 - AluSg SINE Alu 0 310 1 433 35 0 0 chr3 215567727 215567784 -11956794 + AluY SINE Alu 1 57 -261 1541 106 5 0 chr3 215567784 215567991 -11956587 + AluSg/x SINE Alu 98 305 -7 252 0 0 0 chr3 215568542 215568570 -11956008 + (TG)n Simple_repeat Simple_repeat 2 29 0 331 294 168 22 chr3 215569266 215569582 -11954996 - L1M4 LINE L1 -2978 3168 2807 418 306 75 12 chr3 215569858 215570018 -11954560 + L3b LINE CR1 1381 1550 -33 2305 109 0 6 chr3 215570622 215570935 -11953643 - AluSq SINE Alu -2 311 1 29 98 0 0 chr3 215571460 215571552 -11953026 + AT_rich Low_complexity Low_complexity 1 92 0 292 305 38 11 chr3 215571754 215571885 -11952693 + L1ME4a LINE L1 5496 5626 -495 377 65 0 48 chr3 215571888 215571950 -11952628 + (TGGA)n Simple_repeat Simple_repeat 3 61 0 291 230 10 10 chr3 215571959 215572059 -11952519 + (TA)n Simple_repeat Simple_repeat 2 101 0 369 283 48 60 chr3 215572260 215572426 -11952152 + L1ME4a LINE L1 5956 6119 -2 422 326 132 5 chr3 215573539 215573729 -11950849 - MIR SINE MIR -31 231 18 198 350 75 25 chr3 215574584 215574704 -11949874 - L2 LINE L2 -229 3043 2918 1038 254 63 8 chr3 215576537 215576888 -11947690 - L1M4 LINE L1 -1347 4799 4430 2989 212 33 56 chr3 215576913 215578082 -11946496 + L1ME1 LINE L1 5009 6161 -5 25 75 0 0 chr3 215578433 215578486 -11946092 + AT_rich Low_complexity Low_complexity 1 53 0 203 374 91 0 chr3 215578577 215578676 -11945902 + MER91A DNA MER1_type 44 151 -45 258 296 130 17 chr3 215578891 215579006 -11945572 - L3 LINE CR1 -7 1570 1443 289 307 0 18 chr3 215579337 215579451 -11945127 + (CATA)n Simple_repeat Simple_repeat 1 112 0 367 365 27 7 chr3 215579716 215579864 -11944714 + MIR SINE MIR 20 170 -92 304 367 73 0 chr3 215579910 215580060 -11944518 + L2 LINE L2 2600 2760 -554 215 326 79 34 chr3 215580465 215580554 -11944024 + L2 LINE L2 3168 3260 -12 206 220 200 40 chr3 215580711 215580811 -11943767 + L2 LINE L2 3189 3304 -9 414 246 94 14 chr3 215581103 215581241 -11943337 - MIR3 SINE MIR -49 159 11 197 366 14 42 chr3 215581390 215581532 -11943046 - L3b LINE CR1 -316 1267 1130 228 216 0 0 chr3 215583479 215583530 -11941048 + (CA)n Simple_repeat Simple_repeat 2 52 0 226 314 81 69 chr3 215583530 215583692 -11940886 - MIR SINE MIR -58 204 42 2211 98 7 3 chr3 215583752 215584037 -11940541 + AluSq SINE Alu 1 286 -27 265 356 72 36 chr3 215584494 215584688 -11939890 + MIR3 SINE MIR 1 201 -7 874 245 84 43 chr3 215585169 215585521 -11939057 - MLT1A1 LTR MaLR 0 375 1 2214 123 0 7 chr3 215585599 215585900 -11938678 + AluSx SINE Alu 1 299 -13 206 303 8 92 chr3 215586205 215586324 -11938254 + MIR SINE MIR 103 211 -51 747 266 48 0 chr3 215586855 215587103 -11937475 + MIR SINE MIR 2 261 -1 227 302 59 20 chr3 215587571 215587672 -11936906 - MIR SINE MIR -47 161 55 249 240 171 50 chr3 215588338 215588532 -11936046 + MIR SINE MIR 22 247 -15 366 23 0 0 chr3 215588824 215588867 -11935711 + (TG)n Simple_repeat Simple_repeat 2 44 0 215 213 0 0 chr3 215589006 215589053 -11935525 + (TG)n Simple_repeat Simple_repeat 2 48 0 706 184 30 54 chr3 215589799 215589967 -11934611 + MER5B DNA MER1_type 15 178 0 1883 157 0 19 chr3 215590770 215591126 -11933452 + AluJo SINE Alu 1 350 0 529 311 87 19 chr3 215592388 215592710 -11931868 - MLT1I LTR MaLR -2 407 64 1459 104 0 20 chr3 215593095 215593344 -11931234 - L1P LINE L1 -1403 4743 4500 278 128 12 58 chr3 215594011 215594101 -11930477 + (TAA)n Simple_repeat Simple_repeat 1 85 0 378 303 49 0 chr3 215595417 215595559 -11929019 - MIR SINE MIR -6 256 108 471 298 162 38 chr3 215596143 215596489 -11928089 + L1M2 LINE L1 995 1383 -5466 537 44 0 0 chr3 215597638 215597706 -11926872 + (A)n Simple_repeat Simple_repeat 1 68 0 213 319 53 32 chr3 215598842 215598936 -11925642 + L2 LINE L2 2958 3053 -219 180 97 0 0 chr3 215599704 215599735 -11924843 + (T)n Simple_repeat Simple_repeat 1 31 0 2221 105 3 0 chr3 215599991 215600286 -11924292 - AluSx SINE Alu -16 296 1 755 203 218 5 chr3 215600596 215600793 -11923785 + MIR SINE MIR 3 241 -21 21 36 0 0 chr3 215601015 215601043 -11923535 + AT_rich Low_complexity Low_complexity 1 28 0 652 310 128 9 chr3 215601164 215601509 -11923069 + L3 LINE CR1 1153 1538 -39 293 47 23 0 chr3 215602223 215602266 -11922312 + (TG)n Simple_repeat Simple_repeat 1 44 0 198 321 38 47 chr3 215603316 215603422 -11921156 - MIR3 SINE MIR -6 202 98 349 331 95 0 chr3 215604011 215604159 -11920419 + MIR SINE MIR 49 210 -52 308 324 89 38 chr3 215605423 215605793 -11918785 - L1ME4a LINE L1 -219 5902 5514 299 236 137 11 chr3 215606041 215606130 -11918448 + MIR SINE MIR 54 153 -63 392 0 21 0 chr3 215607117 215607165 -11917413 + (CA)n Simple_repeat Simple_repeat 1 49 0 746 173 0 8 chr3 215607533 215607660 -11916918 - FLAM_A SINE Alu -10 132 7 2308 104 3 3 chr3 215607687 215607996 -11916582 - AluSx SINE Alu -3 309 1 332 287 120 42 chr3 215608246 215608462 -11916116 - MIR SINE MIR -7 255 23 398 305 130 56 chr3 215610008 215610416 -11914162 + L1M4 LINE L1 3522 3956 -2190 495 256 69 50 chr3 215611371 215611531 -11913047 - MIR3 SINE MIR -3 205 43 2286 78 6 44 chr3 215611994 215612315 -11912263 - AluY SINE Alu -2 309 1 194 103 0 51 chr3 215613080 215613092 -11911486 + (GAAA)n Simple_repeat Simple_repeat 2 13 -25 2375 106 0 3 chr3 215613092 215613404 -11911174 + AluSx SINE Alu 1 311 -1 194 103 0 51 chr3 215613404 215613430 -11911148 + (GAAA)n Simple_repeat Simple_repeat 13 38 0 201 298 64 96 chr3 215613730 215613918 -11910660 + MER5A DNA MER1_type 7 188 -1 1722 66 5 0 chr3 215614310 215614551 -11910027 - AluY SINE Alu 0 309 68 29 0 0 0 chr3 215615186 215615215 -11909363 + AT_rich Low_complexity Low_complexity 1 29 0 1312 230 22 27 chr3 215616404 215616769 -11907809 - MLT1A2 LTR MaLR -11 363 1 2205 112 0 3 chr3 215616881 215617176 -11907402 - AluSc SINE Alu -15 294 1 425 304 20 136 chr3 215617824 215618169 -11906409 - L2 LINE L2 -9 3263 2959 250 261 46 0 chr3 215618598 215618663 -11905915 - MIR3 SINE MIR -25 183 116 336 256 73 0 chr3 215618974 215619056 -11905522 - MIR SINE MIR -71 191 104 296 404 43 0 chr3 215619179 215619320 -11905258 - L2 LINE L2 -4 3268 3122 187 247 12 59 chr3 215619473 215619558 -11905020 + L2 LINE L2 3186 3266 -6 618 303 141 4 chr3 215621492 215621733 -11902845 - L3 LINE CR1 -123 1454 1181 279 268 93 0 chr3 215621787 215621884 -11902694 - MIR SINE MIR -125 137 32 322 304 70 9 chr3 215623093 215623208 -11901370 + L3 LINE CR1 1434 1555 -22 1727 129 138 12 chr3 215623216 215623432 -11901146 - THE1C LTR MaLR 0 375 101 2340 66 0 30 chr3 215623432 215623735 -11900843 + AluY SINE Alu 6 299 -12 1727 129 138 12 chr3 215623735 215623851 -11900727 - THE1C LTR MaLR -274 101 1 441 330 20 35 chr3 215624184 215624387 -11900191 + MIR SINE MIR 53 252 -10 366 313 180 52 chr3 215624463 215625094 -11899484 + L2 LINE L2 1071 1833 -1481 2950 117 7 2 chr3 215625094 215625537 -11899041 + L1PA14 LINE L1 5708 6152 -9 366 313 180 52 chr3 215625537 215625727 -11898851 + L2 LINE L2 1833 1997 -1317 2391 120 3 13 chr3 215625751 215626126 -11898452 - L1PB1 LINE L1 -2 6149 5779 249 9 5 203 chr3 215626144 215626366 -11898212 + (TA)n Simple_repeat Simple_repeat 2 179 0 344 62 26 113 chr3 215626388 215626582 -11897996 + (TA)n Simple_repeat Simple_repeat 1 177 0 1572 68 17 8 chr3 215626582 215626603 -11897975 - L1PB1 LINE L1 -350 5801 5782 279 54 0 0 chr3 215626603 215626640 -11897938 + (CA)n Simple_repeat Simple_repeat 2 38 0 1572 68 17 8 chr3 215626640 215626852 -11897726 - L1PB1 LINE L1 -369 5782 5566 218 304 149 7 chr3 215626883 215627031 -11897547 + L2 LINE L2 2071 2239 -1075 532 143 9 9 chr3 215627042 215627147 -11897431 - L1MC/D LINE L1 -865 5494 5390 2367 102 0 10 chr3 215627153 215627467 -11897111 + AluSx SINE Alu 1 311 -1 3558 191 19 52 chr3 215627478 215628370 -11896208 + L1MD2 LINE L1 5497 6359 0 33 25 0 0 chr3 215628410 215628450 -11896128 + AT_rich Low_complexity Low_complexity 1 40 0 201 74 0 0 chr3 215628480 215628507 -11896071 + (CA)n Simple_repeat Simple_repeat 2 28 0 914 344 82 16 chr3 215628539 215629176 -11895402 + L2 LINE L2 1833 2511 -803 1058 99 11 11 chr3 215630161 215630342 -11894236 + Tigger1 DNA MER2_type 2209 2389 -29 21 36 0 0 chr3 215630752 215630780 -11893798 + AT_rich Low_complexity Low_complexity 1 28 0 445 323 93 14 chr3 215630835 215631114 -11893464 + L1ME LINE L1 5338 5638 -483 233 128 21 0 chr3 215631375 215631422 -11893156 + (TG)n Simple_repeat Simple_repeat 2 49 0 2165 80 39 7 chr3 215631607 215631893 -11892685 + AluSx SINE Alu 1 295 -17 186 122 20 122 chr3 215632167 215632216 -11892362 - MIR3 SINE MIR -9 199 156 445 342 67 76 chr3 215632598 215633048 -11891530 + L2 LINE L2 2825 3270 -2 1966 141 3 7 chr3 215634243 215634542 -11890036 - AluSx SINE Alu -14 298 1 210 229 12 108 chr3 215634806 215634889 -11889689 - L2 LINE L2 -50 3222 3148 547 271 0 30 chr3 215635216 215635349 -11889229 + MER5B DNA MER1_type 1 129 -49 185 358 111 22 chr3 215635630 215635856 -11888722 + L3 LINE CR1 1317 1562 -15 2288 104 3 0 chr3 215635916 215636224 -11888354 + AluSc SINE Alu 1 309 0 510 299 104 53 chr3 215636331 215636745 -11887833 - MLT1J2 LTR MaLR -13 437 3 309 51 0 0 chr3 215636750 215636789 -11887789 + (CAT)n Simple_repeat Simple_repeat 3 41 0 438 314 197 16 chr3 215637041 215637451 -11887127 - L2 LINE L2 0 3272 2771 315 71 0 0 chr3 215638176 215638218 -11886360 + (TCC)n Simple_repeat Simple_repeat 3 44 0 212 330 92 25 chr3 215638560 215638799 -11885779 + L2 LINE L2 2830 3084 -188 221 235 74 49 chr3 215638987 215639068 -11885510 + MIR SINE MIR 70 152 -110 248 289 91 41 chr3 215639271 215639392 -11885186 - MIR SINE MIR -118 144 18 401 277 28 45 chr3 215639513 215639690 -11884888 - L3 LINE CR1 -318 1259 1086 521 304 72 46 chr3 215641044 215641303 -11883275 - L1MC4a LINE L1 -1883 5925 5674 2555 60 0 0 chr3 215641303 215641605 -11882973 - AluY SINE Alu -9 302 1 521 304 72 46 chr3 215641605 215641884 -11882694 - L1MC4a LINE L1 -2134 5674 5373 183 100 0 0 chr3 215641920 215641950 -11882628 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 21 57 0 0 chr3 215642518 215642553 -11882025 + AT_rich Low_complexity Low_complexity 1 35 0 259 226 60 24 chr3 215642680 215642764 -11881814 - MIR3 SINE MIR -120 88 2 * 268 228 43 22 chr3 215642764 215642843 -11881735 + MIR SINE MIR 73 153 -109 2262 100 0 3 chr3 215643562 215643861 -11880717 + AluSq SINE Alu 1 298 -15 266 314 63 43 chr3 215643864 215644107 -11880471 - L1ME3A LINE L1 -14 6951 6699 1551 199 45 3 chr3 215644107 215644394 -11880184 - AluSx SINE Alu -13 299 1 266 314 63 43 chr3 215644394 215644453 -11880125 - L1ME3A LINE L1 -266 6699 6643 5998 245 90 45 chr3 215644476 215645305 -11879273 - L1MCc LINE L1 -1096 5845 5055 360 0 0 0 chr3 215645305 215645345 -11879233 + (TA)n Simple_repeat Simple_repeat 1 40 0 1771 137 88 15 chr3 215645347 215645676 -11878902 + L1PB4 LINE L1 5794 6146 -10 5998 245 90 45 chr3 215645676 215649496 -11875082 - L1MCc LINE L1 -1886 5055 818 183 80 0 0 chr3 215649724 215649749 -11874829 + (TTTTA)n Simple_repeat Simple_repeat 1 25 0 6005 102 7 2 chr3 215649749 215651100 -11873478 - L1PA8 LINE L1 -24 6148 4795 1528 136 11 114 chr3 215651407 215651774 -11872804 + MER44D DNA MER2_type 9 607 -2 310 257 98 38 chr3 215651916 215652099 -11872479 - L1ME LINE L1 -349 5821 5628 357 24 0 0 chr3 215652412 215652454 -11872124 + (CA)n Simple_repeat Simple_repeat 2 43 0 346 233 0 6 chr3 215652736 215652818 -11871760 - MIR SINE MIR -57 151 71 952 90 0 15 chr3 215652910 215653043 -11871535 - L1MA2 LINE L1 -9 6295 6165 261 57 0 0 chr3 215653821 215653856 -11870722 + (TC)n Simple_repeat Simple_repeat 1 35 0 304 364 106 9 chr3 215654376 215654593 -11869985 - MIR SINE MIR -13 249 12 2018 142 0 7 chr3 215654848 215655136 -11869442 + AluSx SINE Alu 1 286 -26 297 140 0 0 chr3 215655136 215655193 -11869385 + (CA)n Simple_repeat Simple_repeat 1 57 0 541 239 40 55 chr3 215655937 215656138 -11868440 + MIR SINE MIR 65 262 0 2529 72 0 0 chr3 215657254 215657561 -11867017 - AluY SINE Alu -4 307 1 192 340 0 0 chr3 215657891 215657944 -11866634 + L2 LINE L2 3245 3297 -16 343 322 30 45 chr3 215659938 215660137 -11864441 + MIR SINE MIR 53 248 -14 364 314 179 52 chr3 215660217 215660849 -11863729 + L2 LINE L2 1071 1832 -1482 2972 115 7 2 chr3 215660849 215661292 -11863286 + L1PA14 LINE L1 5708 6152 -9 364 314 179 52 chr3 215661292 215661482 -11863096 + L2 LINE L2 1832 1997 -1317 2418 122 3 11 chr3 215661506 215661883 -11862695 - L1PB1 LINE L1 -2 6149 5776 320 87 43 43 chr3 215661884 215661999 -11862579 + (TA)n Simple_repeat Simple_repeat 2 116 0 1439 77 26 17 chr3 215661999 215662020 -11862558 - L1PB1 LINE L1 -350 5801 5782 279 54 0 0 chr3 215662020 215662057 -11862521 + (CA)n Simple_repeat Simple_repeat 2 38 0 1439 77 26 17 chr3 215662057 215662269 -11862309 - L1PB1 LINE L1 -369 5782 5566 218 304 149 7 chr3 215662300 215662448 -11862130 + L2 LINE L2 2071 2239 -1075 514 142 9 19 chr3 215662459 215662565 -11862013 - L1MC/D LINE L1 -748 5494 5390 2193 127 0 10 chr3 215662571 215662885 -11861693 + AluSx SINE Alu 1 311 -1 3641 189 19 48 chr3 215662896 215663785 -11860793 + L1MD2 LINE L1 5497 6359 0 33 25 0 0 chr3 215663825 215663865 -11860713 + AT_rich Low_complexity Low_complexity 1 40 0 201 74 0 0 chr3 215663895 215663922 -11860656 + (CA)n Simple_repeat Simple_repeat 2 28 0 928 342 82 16 chr3 215663954 215664591 -11859987 + L2 LINE L2 1833 2511 -803 1058 99 11 11 chr3 215665576 215665757 -11858821 + Tigger1 DNA MER2_type 2209 2389 -29 21 36 0 0 chr3 215666166 215666194 -11858384 + AT_rich Low_complexity Low_complexity 1 28 0 445 323 93 14 chr3 215666249 215666528 -11858050 + L1ME LINE L1 5338 5638 -483 233 128 21 0 chr3 215666789 215666836 -11857742 + (TG)n Simple_repeat Simple_repeat 2 49 0 2183 99 36 7 chr3 215667021 215667324 -11857254 + AluSx SINE Alu 1 312 0 391 259 116 7 chr3 215667640 215667787 -11856791 + Charlie8 DNA MER1_type 75 237 -2180 266 347 103 48 chr3 215667805 215668096 -11856482 - L2 LINE L2 -624 2690 2384 256 250 204 23 chr3 215668535 215668667 -11855911 + MER96 DNA MER1_type? 1 156 -19 399 301 8 8 chr3 215669172 215669295 -11855283 - MIR3 SINE MIR -11 197 75 2409 88 0 0 chr3 215669300 215669594 -11854984 + AluSc SINE Alu 5 298 -11 529 194 137 14 chr3 215669828 215669967 -11854611 - MLT1J LTR MaLR -324 187 32 189 295 13 39 chr3 215669976 215670054 -11854524 - MIR SINE MIR -114 94 19 321 285 97 54 chr3 215670222 215670408 -11854170 + MIR SINE MIR 35 228 -34 285 273 33 46 chr3 215670614 215670748 -11853830 - MER5B DNA MER1_type -27 162 22 255 320 96 16 chr3 215670731 215670856 -11853722 - L2 LINE L2 -587 2727 2593 * 236 390 68 6 chr3 215671639 215671816 -11852762 - MIR3 SINE MIR -11 197 10 586 279 85 15 chr3 215672190 215672407 -11852171 + MIR SINE MIR 3 232 -30 386 23 0 0 chr3 215672596 215672640 -11851938 + (TG)n Simple_repeat Simple_repeat 2 45 0 1024 224 0 4 chr3 215672719 215672951 -11851627 - L1PA16 LINE L1 -4 6162 5932 327 65 0 0 chr3 215673835 215673881 -11850697 + (TG)n Simple_repeat Simple_repeat 2 47 0 676 215 19 38 chr3 215674816 215674974 -11849604 + MER5B DNA MER1_type 1 155 -23 215 264 38 19 chr3 215675169 215675275 -11849303 + (TA)n Simple_repeat Simple_repeat 2 109 0 325 277 31 46 chr3 215675302 215675432 -11849146 - L1ME4a LINE L1 -257 5864 5737 286 254 0 0 chr3 215676261 215676324 -11848254 + L2 LINE L2 3209 3271 -1 26 30 0 0 chr3 215677336 215677369 -11847209 + AT_rich Low_complexity Low_complexity 1 33 0 256 359 13 6 chr3 215677621 215677755 -11846823 + MIR SINE MIR 9 142 -66 1001 210 15 5 chr3 215677874 215678079 -11846499 - MER3 DNA MER1_type 0 209 3 219 69 0 0 chr3 215678809 215678838 -11845740 + (TC)n Simple_repeat Simple_repeat 1 29 0 423 0 0 0 chr3 215678838 215678885 -11845693 + (TG)n Simple_repeat Simple_repeat 2 48 0 244 25 75 0 chr3 215679317 215679357 -11845221 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 260 319 28 75 chr3 215680129 215680383 -11844195 + L2 LINE L2 2882 3123 -149 296 270 84 101 chr3 215680676 215680854 -11843724 - MIR3 SINE MIR -13 195 21 716 253 30 30 chr3 215681601 215681838 -11842740 - L2 LINE L2 0 3313 3077 459 249 34 93 chr3 215681835 215681891 -11842687 + MIR SINE MIR 13 71 -191 * 2346 85 3 31 chr3 215681891 215682209 -11842369 + AluSq SINE Alu 1 309 -4 459 249 34 93 chr3 215682209 215682357 -11842221 + MIR SINE MIR 71 205 -57 211 300 0 67 chr3 215683105 215683195 -11841383 - MIR SINE MIR -71 191 108 295 294 80 64 chr3 215683266 215683453 -11841125 + MIR SINE MIR 2 141 -67 789 181 0 15 chr3 215683459 215683592 -11840986 + FLAM_C SINE Alu 1 131 -2 21 0 0 0 chr3 215683871 215683892 -11840686 + AT_rich Low_complexity Low_complexity 1 21 0 2200 85 20 7 chr3 215683899 215684192 -11840386 + AluY SINE Alu 3 299 -12 380 299 11 0 chr3 215685274 215685361 -11839217 - MIR SINE MIR -101 107 20 2081 234 73 16 chr3 215685605 215686166 -11838412 + MLT1E LTR MaLR 1 593 0 391 369 8 0 chr3 215686196 215686318 -11838260 - L3 LINE CR1 -41 1536 1414 198 0 0 0 chr3 215687895 215687917 -11836661 + (T)n Simple_repeat Simple_repeat 1 22 0 381 285 29 36 chr3 215688163 215688300 -11836278 + L2 LINE L2 3137 3272 0 187 329 38 0 chr3 215688497 215688576 -11836002 - MIR SINE MIR -60 148 67 1195 105 11 63 chr3 215688746 215688936 -11835642 + AluSq SINE Alu 1 180 -133 1637 133 63 33 chr3 215688936 215689206 -11835372 + AluSx SINE Alu 23 300 -12 241 313 50 0 chr3 215690438 215690518 -11834060 - MIR3 SINE MIR -4 204 121 1950 96 4 0 chr3 215690700 215690993 -11833585 + AluSg SINE Alu 32 325 0 2925 73 15 13 chr3 215692194 215692592 -11831986 + L1PA8 LINE L1 5761 6159 -13 1884 96 0 27 chr3 215693196 215693448 -11831130 + AluSc SINE Alu 35 281 -28 204 67 0 0 chr3 215693448 215693478 -11831100 + (TTAAA)n Simple_repeat Simple_repeat 3 32 0 1173 217 4 8 chr3 215694072 215694307 -11830271 - AluJo SINE Alu -16 296 63 255 143 161 0 chr3 215694307 215694363 -11830215 - MIR SINE MIR -106 156 92 2011 94 0 0 chr3 215694959 215695213 -11829365 - AluSc SINE Alu -9 300 47 2199 127 15 33 chr3 215695339 215696163 -11828415 - L1M1 LINE L1 -716 5589 4091 233 191 32 0 chr3 215696196 215696276 -11828302 + (TTTA)n Simple_repeat Simple_repeat 1 82 0 747 212 159 36 chr3 215696327 215696685 -11827893 - L1ME2 LINE L1 -9 6155 5754 467 288 100 12 chr3 215696883 215697053 -11827525 + MIR3 SINE MIR 16 200 -8 2495 27 0 3 chr3 215697072 215697366 -11827212 + AluYa5 SINE Alu 1 293 -18 442 341 62 19 chr3 215698266 215698474 -11826104 + MIR SINE MIR 2 218 -44 228 267 35 23 chr3 215699265 215699351 -11825227 + MIR SINE MIR 23 109 -99 286 313 84 99 chr3 215699609 215699969 -11824609 - L2 LINE L2 -2 3270 2917 2416 103 0 0 chr3 215699969 215700281 -11824297 + AluSx SINE Alu 1 312 0 286 313 84 99 chr3 215700281 215700374 -11824204 - L2 LINE L2 -355 2917 2824 391 259 116 7 chr3 215700597 215700744 -11823834 + Charlie8 DNA MER1_type 75 237 -2180 266 347 103 48 chr3 215700762 215701053 -11823525 - L2 LINE L2 -624 2690 2384 256 250 204 23 chr3 215701492 215701624 -11822954 + MER96 DNA MER1_type? 1 156 -19 399 301 8 8 chr3 215702129 215702252 -11822326 - MIR3 SINE MIR -11 197 75 2409 88 0 0 chr3 215702257 215702551 -11822027 + AluSc SINE Alu 5 298 -11 529 194 137 14 chr3 215702785 215702924 -11821654 - MLT1J LTR MaLR -324 187 32 214 282 13 39 chr3 215702933 215703011 -11821567 - MIR SINE MIR -114 94 19 321 285 97 54 chr3 215703179 215703365 -11821213 + MIR SINE MIR 35 228 -34 285 273 33 46 chr3 215703571 215703705 -11820873 - MER5B DNA MER1_type -27 162 22 255 320 96 16 chr3 215703688 215703813 -11820765 - L2 LINE L2 -587 2727 2593 * 1210 289 127 57 chr3 215704046 215704815 -11819763 + L3 LINE CR1 754 1576 -1 189 331 33 66 chr3 215705190 215705311 -11819267 - L2 LINE L2 0 3313 3197 400 178 7 133 chr3 215705365 215705448 -11819130 - MLT1G1 LTR MaLR -30 537 476 2089 146 0 3 chr3 215705448 215705757 -11818821 + AluSx SINE Alu 1 308 -4 400 178 7 133 chr3 215705757 215705808 -11818770 - MLT1G1 LTR MaLR -91 476 420 434 269 191 42 chr3 215705912 215705963 -11818615 - MLT1G1 LTR MaLR -281 274 232 2301 175 8 5 chr3 215705963 215706358 -11818220 + MSTD LTR MaLR 1 396 0 434 269 191 42 chr3 215706358 215706428 -11818150 - MLT1G1 LTR MaLR -323 232 174 2071 106 3 26 chr3 215706428 215706730 -11817848 + AluSq SINE Alu 1 295 -18 434 269 191 42 chr3 215706730 215706896 -11817682 - MLT1G1 LTR MaLR -381 174 1 239 326 72 21 chr3 215707030 215707223 -11817355 - L2 LINE L2 -340 2974 2772 195 129 0 0 chr3 215707389 215707420 -11817158 + (T)n Simple_repeat Simple_repeat 1 31 0 331 257 158 79 chr3 215708847 215709112 -11815466 - L2 LINE L2 -8 3305 3020 378 244 24 57 chr3 215709170 215709293 -11815285 - L2 LINE L2 -1 3312 3194 370 287 104 30 chr3 215709315 215709479 -11815099 - MIR3 SINE MIR -31 177 2 231 276 29 57 chr3 215710148 215710253 -11814325 - MIR SINE MIR -73 189 88 247 337 45 65 chr3 215710615 215710814 -11813764 + MIR3 SINE MIR 11 205 -3 293 227 174 38 chr3 215711512 215711644 -11812934 - MIR SINE MIR -21 241 92 2428 91 3 0 chr3 215712375 215712682 -11811896 + AluSx SINE Alu 1 308 -4 221 329 13 13 chr3 215714254 215714333 -11810245 - L2 LINE L2 0 3313 3235 254 164 68 82 chr3 215714499 215714572 -11810006 + MIR SINE MIR 16 87 -121 222 342 37 58 chr3 215715986 215716176 -11808402 - L2 LINE L2 -219 3053 2868 379 160 21 11 chr3 215716279 215716373 -11808205 + GA-rich Low_complexity Low_complexity 2 96 0 251 316 77 17 chr3 215716598 215716715 -11807863 - L3 LINE CR1 -11 1566 1443 290 326 33 0 chr3 215716791 215716883 -11807695 - MIR SINE MIR -64 144 50 273 354 56 0 chr3 215716951 215717112 -11807466 + MIR3 SINE MIR 32 201 -7 320 346 73 37 chr3 215717911 215718238 -11806340 - L2 LINE L2 -1 3312 2974 782 203 116 34 chr3 215719202 215719409 -11805169 + MER58A DNA MER1_type 1 224 0 270 367 25 8 chr3 215719424 215719544 -11805034 + MIR SINE MIR 20 141 -67 282 291 160 29 chr3 215720035 215720210 -11804368 - L3 LINE CR1 -3 1574 1377 212 289 91 25 chr3 215720378 215720499 -11804079 - L3 LINE CR1 -213 1364 1236 308 206 118 52 chr3 215720750 215720886 -11803692 + L1MCa LINE L1 1923 2067 -4359 1975 150 3 0 chr3 215720924 215721210 -11803368 - AluSx SINE Alu -25 287 1 200 261 0 142 chr3 215722365 215722499 -11802079 - L2 LINE L2 -1 3312 3198 255 28 0 28 chr3 215722838 215722874 -11801704 + (TTTA)n Simple_repeat Simple_repeat 2 180 0 2206 109 0 0 chr3 215722874 215723158 -11801420 - AluSq SINE Alu -29 284 1 374 219 235 17 chr3 215723176 215723295 -11801283 - MER5A DNA MER1_type 0 189 45 183 379 0 0 chr3 215723533 215723591 -11800987 + L2 LINE L2 3001 3058 -214 231 289 0 0 chr3 215723677 215723753 -11800825 + L1MC4 LINE L1 6628 6703 -1339 534 267 27 7 chr3 215724063 215724209 -11800369 + MIR SINE MIR 108 256 -6 261 119 0 0 chr3 215725466 215725508 -11799070 + (TATATG)n Simple_repeat Simple_repeat 6 47 0 196 304 18 0 chr3 215726054 215726110 -11798468 - MIR3 SINE MIR -28 180 124 275 226 49 29 chr3 215729496 215729598 -11794980 - L1MC5 LINE L1 -13 7948 7845 1018 144 0 75 chr3 215731131 215731305 -11793273 + AluJo SINE Alu 1 161 -151 240 167 0 0 chr3 215732312 215732360 -11792218 + A-rich Low_complexity Low_complexity 1 48 0 265 188 24 12 chr3 215732803 215732888 -11791690 + CT-rich Low_complexity Low_complexity 4 89 0 2466 56 0 28 chr3 215733581 215733900 -11790678 - AluY SINE Alu 0 311 2 21 0 0 0 chr3 215734041 215734062 -11790516 + AT_rich Low_complexity Low_complexity 1 21 0 2134 47 0 36 chr3 215734455 215734729 -11789849 + AluY SINE Alu 37 300 -11 2146 93 7 10 chr3 215736310 215736610 -11787968 - AluSx SINE Alu -13 299 1 856 73 28 0 chr3 215736615 215736724 -11787854 - MER30 DNA MER1_type -116 114 3 709 301 43 35 chr3 215737518 215737774 -11786804 + MIR SINE MIR 5 262 0 1853 179 7 0 chr3 215737780 215738077 -11786501 - AluJb SINE Alu -13 299 1 242 278 168 31 chr3 215738139 215738330 -11786248 - MIR SINE MIR -18 244 28 6372 65 6 31 chr3 215739941 215740741 -11783837 - LTR17 LTR ERV1 0 780 1 413 296 115 24 chr3 215741622 215741875 -11782703 - L2 LINE L2 -13 3300 3025 212 196 131 93 chr3 215742061 215742168 -11782410 - L2 LINE L2 -9 3263 3153 291 301 61 71 chr3 215742946 215743142 -11781436 - MIR3 SINE MIR -5 203 10 2255 107 3 7 chr3 215743253 215743561 -11781017 - AluSq SINE Alu -3 310 4 709 154 8 0 chr3 215743768 215743885 -11780693 - L1M4 LINE L1 -3403 2743 2626 40 49 0 0 chr3 215744326 215744387 -11780191 + AT_rich Low_complexity Low_complexity 1 61 0 278 277 303 0 chr3 215745295 215745414 -11779164 - MIR SINE MIR 0 262 108 259 279 50 12 chr3 215745441 215745568 -11779010 + MIR SINE MIR 31 262 0 279 288 0 0 chr3 215745587 215745646 -11778932 - MIR SINE MIR -108 100 42 376 337 5 49 chr3 215745712 215745896 -11778682 + MIR3 SINE MIR 20 195 -13 359 277 80 58 chr3 215746536 215746724 -11777854 - L2 LINE L2 0 3313 3122 282 327 18 67 chr3 215746868 215747091 -11777487 + L2 LINE L2 2811 3022 -250 281 279 23 36 chr3 215747388 215747476 -11777102 + MIR SINE MIR 22 106 -109 191 343 14 0 chr3 215747507 215747577 -11777001 - MIR SINE MIR -41 221 151 340 156 47 0 chr3 215747716 215747780 -11776798 - MIR SINE MIR -102 160 94 294 323 24 48 chr3 215748463 215748587 -11775991 + MIR SINE MIR 25 145 -63 239 346 20 0 chr3 215749023 215749124 -11775454 + MIR SINE MIR 39 141 -67 205 225 0 42 chr3 215749748 215749819 -11774759 + C-rich Low_complexity Low_complexity 2 69 0 333 286 11 11 chr3 215750361 215750452 -11774126 + CT-rich Low_complexity Low_complexity 3 93 0 299 265 59 39 chr3 215750483 215750585 -11773993 + MIR SINE MIR 27 130 -78 404 237 85 34 chr3 215751653 215751771 -11772807 - MER94 DNA DNA -10 124 1 202 114 0 29 chr3 215751788 215751823 -11772755 + L2 LINE L2 3222 3255 -17 213 65 0 0 chr3 215752176 215752207 -11772371 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2270 92 11 0 chr3 215752210 215752494 -11772084 - AluSx SINE Alu -25 287 1 261 197 13 79 chr3 215753426 215753502 -11771076 + MIR3 SINE MIR 85 155 -53 2200 99 0 0 chr3 215753850 215754163 -11770415 + AluSq SINE Alu 1 313 0 1296 158 111 16 chr3 215754601 215754854 -11769724 - L1PB4 LINE L1 -86 6070 5794 360 0 0 0 chr3 215754856 215754896 -11769682 + (TA)n Simple_repeat Simple_repeat 1 40 0 2096 221 67 38 chr3 215754951 215755725 -11768853 + L1MC4a LINE L1 4254 5050 -1096 351 324 54 48 chr3 215755722 215755811 -11768767 + L1ME3A LINE L1 5822 5909 -261 * 1514 194 46 3 chr3 215755811 215756094 -11768484 + AluSx SINE Alu 5 299 -13 351 324 54 48 chr3 215756094 215756337 -11768241 + L1ME3A LINE L1 5909 6156 -14 2109 120 0 7 chr3 215756340 215756640 -11767938 - AluSq SINE Alu -15 298 1 272 226 43 21 chr3 215757359 215757452 -11767126 - MIR SINE MIR -109 153 59 241 253 11 58 chr3 215757434 215757521 -11767057 + MIR3 SINE MIR 6 88 -120 * 21 57 0 0 chr3 215757648 215757683 -11766895 + AT_rich Low_complexity Low_complexity 1 35 0 183 100 0 0 chr3 215758251 215758281 -11766297 + (CAAAA)n Simple_repeat Simple_repeat 1 30 0 698 277 140 62 chr3 215758285 215758596 -11765982 + L1MC4a LINE L1 5322 5608 -513 2572 60 0 0 chr3 215758596 215758898 -11765680 + AluY SINE Alu 1 302 -9 698 277 140 62 chr3 215758898 215759323 -11765255 + L1MC4a LINE L1 5608 6116 -5 381 258 31 49 chr3 215760525 215760688 -11763890 + L3 LINE CR1 1100 1259 -318 240 289 91 41 chr3 215760809 215760930 -11763648 + MIR SINE MIR 18 144 -118 217 235 74 49 chr3 215761133 215761214 -11763364 - MIR SINE MIR -110 152 70 200 330 92 25 chr3 215761402 215761641 -11762937 - L2 LINE L2 -188 3084 2830 315 71 0 0 chr3 215761983 215762025 -11762553 + (GGA)n Simple_repeat Simple_repeat 3 44 0 423 314 197 16 chr3 215762750 215763160 -11761418 + L2 LINE L2 2771 3272 0 309 51 0 0 chr3 215763412 215763451 -11761127 + (ATG)n Simple_repeat Simple_repeat 3 41 0 653 289 85 52 chr3 215763456 215763887 -11760691 + MLT1J2 LTR MaLR 3 446 0 2290 104 3 0 chr3 215763977 215764285 -11760293 - AluSc SINE Alu 0 309 1 188 350 117 25 chr3 215764345 215764542 -11760036 - L3 LINE CR1 -15 1562 1348 545 271 0 30 chr3 215764852 215764985 -11759593 - MER5B DNA MER1_type -49 129 1 212 229 12 108 chr3 215765312 215765395 -11759183 + L2 LINE L2 3148 3222 -50 1938 152 3 0 chr3 215765659 215765956 -11758622 + AluSx SINE Alu 1 298 -14 415 342 67 76 chr3 215767153 215767603 -11756975 - L2 LINE L2 -2 3270 2825 189 122 20 122 chr3 215767985 215768034 -11756544 + MIR3 SINE MIR 156 199 -9 2544 34 0 0 chr3 215768308 215768602 -11755976 - AluYa5 SINE Alu -17 294 1 472 288 100 12 chr3 215768621 215768791 -11755787 - MIR3 SINE MIR -8 200 16 899 212 159 36 chr3 215768989 215769347 -11755231 + L1ME2 LINE L1 5754 6155 -9 233 191 32 0 chr3 215769357 215769461 -11755117 + (TAAA)n Simple_repeat Simple_repeat 1 107 0 2496 125 11 31 chr3 215769511 215770340 -11754238 + L1M1 LINE L1 4091 5589 -716 2007 94 0 0 chr3 215770464 215770718 -11753860 + AluSc SINE Alu 47 300 -9 254 143 161 0 chr3 215771314 215771370 -11753208 + MIR SINE MIR 92 156 -106 1140 217 4 8 chr3 215771370 215771605 -11752973 + AluJo SINE Alu 63 296 -16 204 67 0 0 chr3 215772199 215772229 -11752349 + (TTTAA)n Simple_repeat Simple_repeat 3 32 0 1882 96 0 27 chr3 215772229 215772481 -11752097 - AluSc SINE Alu -28 281 35 3121 84 0 22 chr3 215773067 215773483 -11751095 - L1PA8 LINE L1 -5 6167 5761 1949 96 4 0 chr3 215774683 215774976 -11749602 - AluSg SINE Alu 0 325 32 241 313 50 0 chr3 215775158 215775238 -11749340 + MIR3 SINE MIR 121 204 -4 1637 133 63 33 chr3 215776470 215776740 -11747838 - AluSx SINE Alu -12 300 23 1195 105 11 63 chr3 215776740 215776930 -11747648 - AluSq SINE Alu -133 180 1 187 329 38 0 chr3 215777100 215777179 -11747399 + MIR SINE MIR 67 148 -60 381 285 29 36 chr3 215777376 215777513 -11747065 - L2 LINE L2 0 3272 3137 221 67 0 67 chr3 215777759 215777804 -11746774 + (A)n Simple_repeat Simple_repeat 1 42 0 391 369 8 0 chr3 215779358 215779480 -11745098 + L3 LINE CR1 1414 1536 -41 2081 234 73 16 chr3 215779510 215780071 -11744507 - MLT1E LTR MaLR 0 593 1 380 299 11 0 chr3 215780315 215780402 -11744176 + MIR SINE MIR 20 107 -101 2211 98 7 3 chr3 215781909 215782194 -11742384 + AluSq SINE Alu 1 286 -27 1753 161 4 11 chr3 215784467 215784747 -11739831 + AluJo SINE Alu 6 283 -29 346 140 0 0 chr3 215784747 215784804 -11739774 + AluJ/FRAM SINE Alu 225 281 -21 416 131 0 0 chr3 215784804 215784865 -11739713 + AluJ/FRAM SINE Alu 223 283 -29 * 458 134 0 0 chr3 215784863 215784930 -11739648 + AluJ/FRAM SINE Alu 223 289 -23 2334 106 43 3 chr3 215786565 215786915 -11737663 - THE1B LTR MaLR 0 364 1 261 119 0 0 chr3 215788131 215788173 -11736405 + (TATATG)n Simple_repeat Simple_repeat 6 47 0 191 304 18 0 chr3 215788719 215788775 -11735803 - MIR3 SINE MIR -28 180 124 182 396 44 0 chr3 215789111 215789202 -11735376 + MIR SINE MIR 40 134 -74 233 226 49 29 chr3 215792161 215792263 -11732315 - L1MC5 LINE L1 -13 7948 7845 1029 144 0 75 chr3 215793796 215793970 -11730608 + AluJo SINE Alu 1 161 -151 240 167 0 0 chr3 215794977 215795025 -11729553 + A-rich Low_complexity Low_complexity 1 48 0 265 188 24 12 chr3 215795468 215795553 -11729025 + CT-rich Low_complexity Low_complexity 4 89 0 2554 58 0 3 chr3 215796251 215796562 -11728016 - AluY SINE Alu 0 311 2 21 0 0 0 chr3 215796703 215796724 -11727854 + AT_rich Low_complexity Low_complexity 1 21 0 2115 47 0 36 chr3 215797117 215797391 -11727187 + AluY SINE Alu 37 300 -11 2057 39 47 8 chr3 215798972 215799227 -11725351 - AluY SINE Alu -13 298 34 198 368 0 0 chr3 215799229 215799297 -11725281 - L3 LINE CR1 -105 1472 1405 2414 56 3 13 chr3 215799683 215799987 -11724591 + AluSc SINE Alu 1 301 -8 389 206 20 110 chr3 215800394 215800540 -11724038 - MIR SINE MIR -108 154 22 3851 17 0 0 chr3 215801728 215802191 -11722387 - L1PA3 LINE L1 -357 5798 5336 3023 34 0 0 chr3 215802191 215802545 -11722033 + L1PA3 LINE L1 5798 6152 -3 393 22 0 0 chr3 215802953 215802999 -11721579 + (CA)n Simple_repeat Simple_repeat 2 47 0 206 340 72 31 chr3 215807309 215807406 -11717172 - L2 LINE L2 -49 3223 3123 581 273 68 19 chr3 215808091 215808252 -11716326 - MIR3 SINE MIR -15 193 25 2208 105 3 0 chr3 215808776 215809071 -11715507 - AluSq SINE Alu -17 296 1 351 319 91 50 chr3 215809076 215809260 -11715318 + L1ME3A LINE L1 2513 2688 -3458 440 52 39 13 chr3 215809260 215809337 -11715241 + (TA)n Simple_repeat Simple_repeat 2 80 0 351 319 91 50 chr3 215809337 215809535 -11715043 + L1ME3A LINE L1 2688 2911 -3235 453 258 130 27 chr3 215809541 215810064 -11714514 + L1ME3A LINE L1 2932 3508 -2638 483 221 37 61 chr3 215810069 215810232 -11714346 + L1ME3A LINE L1 5997 6155 -15 1517 133 4 4 chr3 215810522 215810755 -11713823 + AluSq SINE Alu 1 233 -80 2133 117 0 0 chr3 215810793 215811074 -11713504 + AluSx SINE Alu 1 281 -31 23 92 0 0 chr3 215811114 215811179 -11713399 + AT_rich Low_complexity Low_complexity 1 65 0 266 277 79 90 chr3 215811187 215811364 -11713214 + L1ME3A LINE L1 3969 4143 -2003 26 50 0 0 chr3 215811366 215811406 -11713172 + AT_rich Low_complexity Low_complexity 1 40 0 2201 107 7 0 chr3 215811506 215811806 -11712772 + AluSq SINE Alu 3 304 -9 413 300 100 7 chr3 215811923 215812213 -11712365 + L1ME3A LINE L1 4465 4781 -1365 2196 99 3 10 chr3 215812421 215812724 -11711854 - AluSx SINE Alu -11 301 1 845 290 109 32 chr3 215812728 215813053 -11711525 + L1ME3A LINE L1 5083 5381 -789 1950 87 11 14 chr3 215813053 215813329 -11711249 - AluSc SINE Alu -6 303 29 845 290 109 32 chr3 215813329 215813806 -11710772 + L1ME3A LINE L1 5381 5952 -218 28 71 0 0 chr3 215813949 215814005 -11710573 + AT_rich Low_complexity Low_complexity 1 56 0 1903 142 0 0 chr3 215814099 215814374 -11710204 - AluSx SINE Alu -21 291 17 2780 184 44 45 chr3 215815653 215816315 -11708263 + MER67B LTR ERV1 1 661 0 439 144 52 0 chr3 215818884 215818981 -11705597 + L1MA7 LINE L1 6189 6290 -1 431 236 56 113 chr3 215819004 215819081 -11705497 - L1ME4a LINE L1 -24 6097 6017 962 217 24 5 chr3 215819081 215819293 -11705285 - MER20 DNA MER1_type -2 217 2 431 236 56 113 chr3 215819293 215819388 -11705190 - L1ME4a LINE L1 -104 6017 5918 2326 91 7 3 chr3 215819388 215819695 -11704883 - AluSq SINE Alu -5 308 1 431 236 56 113 chr3 215819695 215819911 -11704667 - L1ME4a LINE L1 -203 5918 5730 274 303 35 14 chr3 215820710 215820855 -11703723 - L1ME4a LINE L1 -398 5723 5576 2102 139 7 0 chr3 215821075 215821376 -11703202 - AluSg SINE Alu -7 303 1 332 316 88 77 chr3 215821506 215821561 -11703017 + L2 LINE L2 2914 2967 -305 2015 102 31 20 chr3 215821561 215821854 -11702724 - AluSx SINE Alu -12 300 5 332 316 88 77 chr3 215821854 215822070 -11702508 + L2 LINE L2 2967 3188 -84 298 199 7 154 chr3 215822090 215822226 -11702352 + MER102b DNA MER1_type 214 329 -12 1686 166 128 102 chr3 215823666 215824088 -11700490 - MLT2B2 LTR ERVL 0 520 88 741 205 107 118 chr3 215824088 215824435 -11700143 - MLT1A1 LTR MaLR 0 365 23 664 104 0 96 chr3 215824436 215824551 -11700027 - MLT2B2 LTR ERVL -416 104 1 341 308 30 15 chr3 215825592 215825725 -11698853 + MIR3 SINE MIR 36 170 -38 316 356 30 8 chr3 215825765 215825897 -11698681 - L2 LINE L2 0 3272 3138 2332 100 7 0 chr3 215826021 215826330 -11698248 - AluSp SINE Alu -2 311 1 243 277 0 109 chr3 215826541 215826660 -11697918 + L2 LINE L2 3208 3313 0 228 263 79 13 chr3 215826683 215826759 -11697819 - MIR SINE MIR -133 129 49 2124 114 0 49 chr3 215826797 215827122 -11697456 + AluSx SINE Alu 1 309 -3 213 39 0 0 chr3 215828019 215828045 -11696533 + (TC)n Simple_repeat Simple_repeat 1 26 0 2552 140 39 2 chr3 215828778 215829191 -11695387 - MSTA LTR MaLR 0 428 1 22 0 0 0 chr3 215829221 215829243 -11695335 + AT_rich Low_complexity Low_complexity 1 22 0 415 113 0 19 chr3 215829369 215829443 -11695135 - L1M3 LINE L1 -695 5473 5415 2649 139 14 0 chr3 215829443 215829860 -11694718 + L1PA16 LINE L1 5742 6165 -1 242 196 52 10 chr3 215829903 215830000 -11694578 + (TA)n Simple_repeat Simple_repeat 1 101 0 1923 168 0 0 chr3 215830187 215830485 -11694093 + AluJo SINE Alu 1 298 -14 230 215 0 77 chr3 215830550 215830615 -11693963 + MIR SINE MIR 91 150 -112 294 171 0 0 chr3 215831734 215831775 -11692803 + AluJb SINE Alu 1 41 -262 6175 97 11 3 chr3 215831792 215832645 -11691933 - L1PA13 LINE L1 0 6163 5305 1510 156 3 98 chr3 215832645 215832952 -11691626 + AluJb SINE Alu 26 303 -9 604 301 80 33 chr3 215833303 215833602 -11690976 - L3 LINE CR1 -3 1574 1262 201 122 24 24 chr3 215834738 215834779 -11689799 + (TAAA)n Simple_repeat Simple_repeat 4 44 0 2146 130 31 8 chr3 215834920 215835103 -11689475 - MER46B DNA MER2_type -2495 236 165 327 49 0 0 chr3 215835103 215835144 -11689434 + (TG)n Simple_repeat Simple_repeat 2 42 0 2146 130 31 8 chr3 215835144 215835313 -11689265 - MER46B DNA MER2_type -2566 165 1 1990 175 94 35 chr3 215835429 215836042 -11688536 - MER39 LTR ERV1 0 707 1 325 71 0 0 chr3 215836392 215836434 -11688144 - 5S rRNA rRNA -79 42 1 2405 148 67 3 chr3 215836465 215836856 -11687722 + MSTB LTR MaLR 1 416 -10 245 248 64 28 chr3 215837573 215837682 -11686896 + MIR3 SINE MIR 93 205 -3 501 296 38 5 chr3 215837875 215838061 -11686517 + MIR SINE MIR 1 192 -70 541 255 144 37 chr3 215838301 215838599 -11685979 - L2 LINE L2 -9 3304 2975 28 0 0 0 chr3 215838661 215838689 -11685889 + AT_rich Low_complexity Low_complexity 1 28 0 2028 135 0 3 chr3 215838694 215838983 -11685595 - AluSx SINE Alu -24 288 1 1463 175 31 45 chr3 215839360 215839652 -11684926 + AluJo SINE Alu 9 296 -16 285 340 34 92 chr3 215839698 215839992 -11684586 - L2 LINE L2 -1 3271 2995 257 211 39 58 chr3 215840467 215840571 -11684007 + L2 LINE L2 2286 2387 -927 216 322 35 9 chr3 215841111 215841226 -11683352 + MIR SINE MIR 24 141 -67 222 348 64 39 chr3 215842155 215842437 -11682141 + L2 LINE L2 2636 2924 -390 271 289 172 16 chr3 215842807 215842935 -11681643 - MIR3 SINE MIR -57 151 4 234 0 0 0 chr3 215842995 215843021 -11681557 + (TG)n Simple_repeat Simple_repeat 2 27 0 196 265 15 29 chr3 215843744 215843812 -11680766 - MIR3 SINE MIR -2 206 140 240 244 0 70 chr3 215843814 215843900 -11680678 + CT-rich Low_complexity Low_complexity 4 83 0 265 334 38 10 chr3 215844100 215844205 -11680373 - MIR3 SINE MIR -53 155 47 2465 74 7 0 chr3 215844852 215845150 -11679428 + AluY SINE Alu 1 300 -11 1515 126 102 49 chr3 215845162 215845447 -11679131 + AluJo SINE Alu 1 300 -12 290 256 67 0 chr3 215847148 215847238 -11677340 + MIR SINE MIR 82 177 -85 257 180 0 16 chr3 215848651 215848712 -11675866 + (TTA)n Simple_repeat Simple_repeat 2 61 0 307 194 0 56 chr3 215848721 215848793 -11675785 - L2 LINE L2 0 3313 3246 2030 144 16 0 chr3 215848906 215849212 -11675366 - AluSx SINE Alu -1 311 1 2167 73 0 4 chr3 215849223 215849495 -11675083 - AluY SINE Alu -4 307 37 216 291 125 40 chr3 215849848 215850046 -11674532 + MIR3 SINE MIR 1 211 -51 1505 133 13 4 chr3 215850678 215850789 -11673789 - MER30 DNA MER1_type 0 230 121 2340 92 3 3 chr3 215850789 215851083 -11673495 - AluSq SINE Alu -19 294 1 1505 133 13 4 chr3 215851083 215851197 -11673381 - MER30 DNA MER1_type -109 121 3 588 285 51 43 chr3 215851991 215852247 -11672331 + MIR SINE MIR 5 262 0 1868 179 7 0 chr3 215852253 215852550 -11672028 - AluJb SINE Alu -13 299 1 190 286 101 36 chr3 215852635 215852803 -11671775 - MIR SINE MIR -56 206 28 6072 65 6 28 chr3 215854413 215855210 -11669368 - LTR17 LTR ERV1 0 780 1 349 296 115 24 chr3 215856091 215856344 -11668234 - L2 LINE L2 -13 3300 3025 226 326 51 61 chr3 215857415 215857611 -11666967 - MIR3 SINE MIR -5 203 10 2270 107 3 7 chr3 215857722 215858030 -11666548 - AluSq SINE Alu -3 310 4 706 154 8 0 chr3 215858237 215858354 -11666224 - L1M4 LINE L1 -3403 2743 2626 40 49 0 0 chr3 215858794 215858855 -11665723 + AT_rich Low_complexity Low_complexity 1 61 0 244 277 303 0 chr3 215859763 215859882 -11664696 - MIR SINE MIR 0 262 108 235 279 50 12 chr3 215859909 215860036 -11664542 + MIR SINE MIR 31 262 0 261 271 0 0 chr3 215860055 215860114 -11664464 - MIR SINE MIR -108 100 42 328 326 0 37 chr3 215860229 215860364 -11664214 + MIR3 SINE MIR 66 195 -13 314 277 80 58 chr3 215861004 215861192 -11663386 - L2 LINE L2 0 3313 3122 279 316 0 70 chr3 215861372 215861559 -11663019 + L2 LINE L2 2849 3022 -250 261 279 23 36 chr3 215861856 215861944 -11662634 + MIR SINE MIR 22 106 -109 319 175 0 0 chr3 215862191 215862248 -11662330 - MIR SINE MIR -112 150 94 261 299 9 56 chr3 215862948 215863055 -11661523 + MIR SINE MIR 44 145 -63 212 346 20 0 chr3 215863491 215863592 -11660986 + MIR SINE MIR 39 141 -67 205 225 0 42 chr3 215864216 215864287 -11660291 + C-rich Low_complexity Low_complexity 2 69 0 333 286 11 11 chr3 215864829 215864920 -11659658 + CT-rich Low_complexity Low_complexity 3 93 0 266 265 59 39 chr3 215864951 215865053 -11659525 + MIR SINE MIR 27 130 -78 397 237 85 34 chr3 215866121 215866239 -11658339 - MER94 DNA DNA -10 124 1 189 114 0 29 chr3 215866256 215866291 -11658287 + L2 LINE L2 3222 3255 -17 213 65 0 0 chr3 215866644 215866675 -11657903 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2293 92 11 0 chr3 215866678 215866962 -11657616 - AluSx SINE Alu -25 287 1 236 197 13 79 chr3 215867894 215867970 -11656608 + MIR3 SINE MIR 85 155 -53 2227 99 0 0 chr3 215868318 215868631 -11655947 + AluSq SINE Alu 1 313 0 225 94 0 0 chr3 215869067 215869099 -11655479 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 386 346 22 27 chr3 215869873 215870058 -11654520 - MIR3 SINE MIR -4 204 21 180 0 0 0 chr3 215870059 215870079 -11654499 + (T)n Simple_repeat Simple_repeat 1 20 0 2100 149 24 3 chr3 215870211 215870547 -11654031 + MER2 DNA MER2_type 2 344 0 284 335 93 37 chr3 215871961 215872122 -11652456 - MIR3 SINE MIR -23 185 16 182 270 79 79 chr3 215872752 215872841 -11651737 + MIR SINE MIR 19 107 -155 281 317 32 8 chr3 215872966 215873089 -11651489 + L3b LINE CR1 1268 1393 -190 22 0 0 0 chr3 215873864 215873886 -11650692 + AT_rich Low_complexity Low_complexity 1 22 0 339 230 0 40 chr3 215874770 215874871 -11649707 + L1ME LINE L1 5666 5764 -357 574 259 103 0 chr3 215875506 215875680 -11648898 + MIR SINE MIR 68 259 -3 27 0 0 0 chr3 215876152 215876179 -11648399 + AT_rich Low_complexity Low_complexity 1 27 0 883 263 52 22 chr3 215876183 215876415 -11648163 - MIR SINE MIR -16 246 8 291 276 0 0 chr3 215876504 215876580 -11647998 + (CAATT)n Simple_repeat Simple_repeat 3 78 0 370 246 8 8 chr3 215877965 215878091 -11646487 + CT-rich Low_complexity Low_complexity 4 129 0 583 296 100 69 chr3 215878121 215878482 -11646096 - L2 LINE L2 -1 3271 2900 202 259 62 25 chr3 215878478 215878559 -11646019 - L2 LINE L2 -548 2766 2683 * 427 277 27 38 chr3 215879826 215880012 -11644566 + MIR SINE MIR 22 205 -57 217 274 41 41 chr3 215880247 215880320 -11644258 + L2 LINE L2 3116 3188 -84 631 306 57 20 chr3 215880326 215880574 -11644004 + MIR SINE MIR 3 259 -3 456 333 11 17 chr3 215880899 215881073 -11643505 - MIR SINE MIR -70 192 20 13977 32 3 1 chr3 215882316 215884076 -11640502 - L1PA4 LINE L1 -1012 5134 3371 7632 20 9 0 chr3 215884076 215885092 -11639486 + L1PA4 LINE L1 5132 6155 0 327 353 72 0 chr3 215885667 215885806 -11638772 + MIR SINE MIR 53 201 -61 21 36 0 0 chr3 215885830 215885858 -11638720 + AT_rich Low_complexity Low_complexity 1 28 0 251 247 56 0 chr3 215885875 215885964 -11638614 - MLT1K LTR MaLR 0 588 495 6803 69 7 5 chr3 215886157 215887903 -11636675 - L1PA7 LINE L1 0 6154 4424 543 369 42 21 chr3 215887924 215888255 -11636323 - MLT1K LTR MaLR -242 346 9 211 317 12 12 chr3 215889336 215889418 -11635160 - L2 LINE L2 -181 3091 3010 407 331 48 24 chr3 215890264 215890465 -11634113 + MIR SINE MIR 8 214 -48 220 318 38 23 chr3 215891239 215891371 -11633207 + MIR SINE MIR 110 243 -19 210 292 28 14 chr3 215891447 215891519 -11633059 - L3 LINE CR1 -174 1403 1331 329 293 9 69 chr3 215893312 215893428 -11631150 - L2 LINE L2 -2 3270 3162 188 302 0 0 chr3 215893559 215893612 -11630966 + L2 LINE L2 2711 2763 -551 225 218 109 0 chr3 215896507 215896562 -11628016 + L2 LINE L2 3212 3272 0 375 288 187 19 chr3 215896753 215897010 -11627568 - MLT1L LTR MaLR -5 610 311 1873 180 26 11 chr3 215897113 215897491 -11627087 - MLT1B LTR MaLR 0 390 7 1976 101 36 7 chr3 215897966 215898244 -11626334 - AluSx SINE Alu -26 286 1 2080 115 0 34 chr3 215898986 215899319 -11625259 - AluSx SINE Alu 0 323 1 3789 212 37 16 chr3 215899321 215899831 -11624747 - L1MD1 LINE L1 -19 6617 6119 2061 204 49 5 chr3 215899831 215900278 -11624300 + MLT1C LTR MaLR 1 467 0 3789 212 37 16 chr3 215900278 215901199 -11623379 - L1MD1 LINE L1 -517 6119 5087 7339 215 73 41 chr3 215901223 215901552 -11623026 - L1MD1 LINE L1 -3950 2590 2273 2125 75 4 0 chr3 215901552 215901848 -11622730 - AluY SINE Alu 0 311 15 7339 215 73 41 chr3 215901848 215903332 -11621246 - L1MD1 LINE L1 -4267 2273 673 201 74 0 0 chr3 215903332 215903359 -11621219 + (TGG)n Simple_repeat Simple_repeat 1 27 0 7339 215 73 41 chr3 215903359 215904021 -11620557 - L1MD1 LINE L1 -5867 673 34 342 231 195 20 chr3 215904045 215904159 -11620419 - L1MC4 LINE L1 -3 8039 7946 194 62 31 0 chr3 215904159 215904191 -11620387 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 342 231 195 20 chr3 215904191 215904271 -11620307 - L1MC4 LINE L1 -96 7946 7811 2224 124 0 6 chr3 215904271 215904585 -11619993 + AluSx SINE Alu 1 312 0 359 183 12 0 chr3 215905433 215905515 -11619063 + (CATA)n Simple_repeat Simple_repeat 1 83 0 458 238 42 7 chr3 215906549 215906692 -11617886 - L1MC4 LINE L1 -215 7827 7680 2007 73 0 11 chr3 215907488 215907748 -11616830 - AluY SINE Alu -19 292 36 315 186 0 0 chr3 215908079 215908138 -11616440 - MLT1I LTR MaLR 0 409 351 1663 204 7 3 chr3 215908143 215908432 -11616146 - AluJb SINE Alu -22 290 1 252 0 0 0 chr3 215908440 215908468 -11616110 + (T)n Simple_repeat Simple_repeat 1 28 0 395 171 77 43 chr3 215908665 215908782 -11615796 - MLT1I LTR MaLR -270 139 19 776 309 35 67 chr3 215910380 215910813 -11613765 + L3 LINE CR1 1082 1500 -77 335 301 43 11 chr3 215911011 215911197 -11613381 - HAL1 LINE L1 -352 2155 1964 213 322 0 22 chr3 215911489 215911579 -11612999 + CT-rich Low_complexity Low_complexity 3 90 0 429 301 127 45 chr3 215911836 215912261 -11612317 + L1M4 LINE L1 4901 5360 -786 649 278 105 46 chr3 215912267 215912875 -11611703 + HAL1 LINE L1 857 1500 -1007 2129 127 13 3 chr3 215913107 215913414 -11611164 - AluSg SINE Alu 0 310 1 504 292 0 0 chr3 215913743 215913856 -11610722 + MER81 DNA DNA 1 113 -1 225 0 0 0 chr3 215914218 215914243 -11610335 + (TTCA)n Simple_repeat Simple_repeat 2 26 0 714 339 131 13 chr3 215914255 215914809 -11609769 - L2 LINE L2 0 3313 2688 2681 137 34 0 chr3 215914816 215915292 -11609286 + L1MA4 LINE L1 5752 6243 -57 571 277 31 22 chr3 215915304 215915528 -11609050 - L2 LINE L2 -619 2695 2470 731 246 90 9 chr3 215915695 215915906 -11608672 + MIR SINE MIR 1 228 -34 422 232 66 96 chr3 215915935 215916237 -11608341 - L1ME LINE L1 -302 5819 5527 330 339 42 0 chr3 215916822 215916940 -11607638 - L1ME LINE L1 -1282 4864 4742 1737 169 54 0 chr3 215916988 215917267 -11607311 - AluJo SINE Alu -18 294 1 209 33 33 0 chr3 215917487 215917517 -11607061 + (CAA)n Simple_repeat Simple_repeat 3 33 0 1718 162 54 29 chr3 215917548 215917899 -11606679 - MLT1A1 LTR MaLR 0 365 6 185 310 85 54 chr3 215918219 215918348 -11606230 - MIR3 SINE MIR -65 143 11 316 214 24 48 chr3 215919149 215919233 -11605345 + MIR SINE MIR 179 260 -2 454 315 73 6 chr3 215919612 215919777 -11604801 - L3 LINE CR1 -154 1423 1248 585 68 23 0 chr3 215920422 215920510 -11604068 + L1PA15 LINE L1 6071 6160 -5 23 0 0 0 chr3 215921076 215921099 -11603479 + AT_rich Low_complexity Low_complexity 1 23 0 610 73 10 10 chr3 215921099 215921195 -11603383 - L1MA1 LINE L1 0 6302 6207 1179 72 11 33 chr3 215921195 215921376 -11603202 + L1MA1 LINE L1 5852 6028 -274 225 346 60 30 chr3 215921437 215921570 -11603008 + L2 LINE L2 3134 3270 -2 25 0 0 0 chr3 215922056 215922081 -11602497 + AT_rich Low_complexity Low_complexity 1 25 0 184 283 142 18 chr3 215922231 215922344 -11602234 - MIR SINE MIR -15 247 121 699 198 175 0 chr3 215922992 215923169 -11601409 + MER58A DNA MER1_type 1 208 -16 7883 16 0 0 chr3 215923174 215924293 -11600285 + L1PA2 LINE L1 5036 6154 -1 617 272 12 0 chr3 215924533 215924706 -11599872 + MER5B DNA MER1_type 1 175 -3 21 0 0 0 chr3 215925925 215925946 -11598632 + AT_rich Low_complexity Low_complexity 1 21 0 9683 179 16 23 chr3 215926006 215926017 -11598561 - L1PA12 LINE L1 -2526 5058 5048 9189 143 22 7 chr3 215926017 215927622 -11596956 - L1PA11 LINE L1 0 6174 4510 2078 143 22 25 chr3 215927622 215927987 -11596591 - THE1B LTR MaLR 0 364 1 9189 143 22 7 chr3 215927987 215928771 -11595807 - L1PA11 LINE L1 -1664 4510 3739 9683 179 16 23 chr3 215928771 215930752 -11593826 - L1PA12 LINE L1 -2536 5048 3054 1653 177 127 16 chr3 215930752 215931137 -11593441 + MSTA LTR MaLR 1 428 0 9324 143 4 48 chr3 215931139 215932789 -11591789 + MSTA-int LTR MaLR 3 1579 -1 1924 158 119 13 chr3 215932790 215933177 -11591401 + MSTA LTR MaLR 1 428 0 9683 179 16 23 chr3 215933177 215933442 -11591136 - L1PA12 LINE L1 -4530 3054 2803 21 0 0 0 chr3 215933442 215933463 -11591115 + AT_rich Low_complexity Low_complexity 1 21 0 40837 34 22 1 chr3 215933463 215939487 -11585091 - L1PA3 LINE L1 0 6155 2 6476 243 33 23 chr3 215939490 215941771 -11582807 - L1PA12 LINE L1 -4748 2836 1 1219 169 77 109 chr3 215942297 215942700 -11581878 - MLT1B LTR MaLR 0 390 1 209 315 69 69 chr3 215942814 215943102 -11581476 - L2 LINE L2 -403 2911 2624 409 356 93 14 chr3 215943102 215943318 -11581260 + MIR SINE MIR 2 234 -28 195 175 88 53 chr3 215944184 215944241 -11580337 - L2 LINE L2 0 3313 3255 220 204 0 37 chr3 215944271 215944325 -11580253 - L2 LINE L2 0 3313 3262 288 272 215 6 chr3 215944353 215944511 -11580067 - MIR3 SINE MIR -8 200 10 2210 181 17 5 chr3 215945864 215946279 -11578299 + MSTB LTR MaLR 1 420 -6 227 325 123 9 chr3 215946377 215946491 -11578087 + MIR3 SINE MIR 36 162 -46 758 232 11 39 chr3 215947000 215947181 -11577397 - MIR SINE MIR -66 196 21 2130 85 9 66 chr3 215947224 215947542 -11577036 + AluSx SINE Alu 1 300 -12 232 378 0 0 chr3 215947832 215947914 -11576664 - L2 LINE L2 -6 3266 3185 24 0 0 0 chr3 215948111 215948135 -11576443 + AT_rich Low_complexity Low_complexity 1 24 0 1903 207 96 13 chr3 215948233 215948692 -11575886 + MLT1D LTR MaLR 1 497 -8 3259 29 3 0 chr3 215948831 215949217 -11575361 - L1PA3 LINE L1 0 6155 5769 627 248 73 57 chr3 215949252 215949498 -11575080 - MLT1J LTR MaLR -250 261 12 1622 202 27 7 chr3 215949510 215949807 -11574771 - AluJb SINE Alu -9 303 1 2272 83 17 0 chr3 215949821 215950109 -11574469 - AluY SINE Alu -18 293 1 445 325 21 53 chr3 215950383 215950666 -11573912 + L1MEc LINE L1 2183 2456 -3940 5325 124 30 19 chr3 215950989 215952676 -11571902 + L1PA16 LINE L1 4459 6159 -7 514 287 47 107 chr3 215952771 215953350 -11571228 + L1MEc LINE L1 3145 3688 -2527 225 331 36 27 chr3 215953424 215953756 -11570822 + L1MEc LINE L1 3759 4093 -2122 316 266 9 0 chr3 215954154 215954267 -11570311 + L1MEc LINE L1 4559 4672 -1543 773 305 51 12 chr3 215954730 215955331 -11569247 + L1MEc LINE L1 5081 5702 -531 182 313 98 67 chr3 215956096 215956320 -11568258 - L3 LINE CR1 -3 1574 1344 480 280 17 8 chr3 215957577 215957695 -11566883 + MIR SINE MIR 3 121 -141 185 362 112 0 chr3 215958781 215958897 -11565681 - MIR3 SINE MIR -72 136 8 253 343 0 19 chr3 215959043 215959148 -11565430 - MIR SINE MIR -62 146 44 364 320 17 47 chr3 215959558 215959730 -11564848 + MIR3 SINE MIR 31 197 -11 203 371 0 0 chr3 215960260 215960322 -11564256 + L2 LINE L2 3211 3272 0 2347 101 0 0 chr3 215960506 215960804 -11563774 + AluSq SINE Alu 1 298 -15 198 282 70 28 chr3 215961010 215961081 -11563497 - L2 LINE L2 -529 2785 2712 338 346 39 8 chr3 215961675 215961805 -11562773 + MIR SINE MIR 13 146 -116 191 35 0 35 chr3 215963146 215963175 -11561403 + (CAAAA)n Simple_repeat Simple_repeat 1 28 0 8199 139 21 5 chr3 215963421 215964849 -11559729 - Tigger1 DNA MER2_type 0 2418 968 3215 223 92 9 chr3 215964867 215966085 -11558493 + L1PB1 LINE L1 6 1469 -5394 * 10371 183 8 6 chr3 215966084 215969324 -11555254 + L1PB1 LINE L1 3623 6864 -3 3843 148 24 70 chr3 215969324 215969534 -11555044 - Tigger1 DNA MER2_type -1442 976 758 3194 122 33 2 chr3 215969534 215970016 -11554562 + LOR1a LTR ERV1 1 497 0 3843 148 24 70 chr3 215970016 215970604 -11553974 - Tigger1 DNA MER2_type -1660 758 215 284 214 18 0 chr3 215970604 215970660 -11553918 + AluJ/FLAM SINE Alu 1 57 -245 799 161 0 0 chr3 215970794 215970918 -11553660 + FLAM_C SINE Alu 1 124 -9 613 155 0 19 chr3 215970956 215971059 -11553519 + AluJb SINE Alu 194 294 -18 1201 143 0 35 chr3 215971059 215971289 -11553289 - Tigger1 DNA MER2_type -2192 226 5 547 325 30 24 chr3 215971534 215971829 -11552749 - LTR16C LTR ERVL -2 489 193 689 87 0 10 chr3 215972273 215972376 -11552202 + (TTCC)n Simple_repeat Simple_repeat 4 105 0 1883 157 4 0 chr3 215972376 215972657 -11551921 - AluSx SINE Alu -30 282 1 269 425 59 7 chr3 215972813 215972966 -11551612 + L2 LINE L2 3088 3248 -24 245 273 0 0 chr3 215974011 215974099 -11550479 - L1MC4 LINE L1 -1341 6701 6614 201 229 0 0 chr3 215974100 215974148 -11550430 + (TA)n Simple_repeat Simple_repeat 1 48 0 309 225 45 34 chr3 215974150 215974239 -11550339 + L1MC4 LINE L1 6615 6704 -1338 214 250 30 60 chr3 215974389 215974489 -11550089 - MIR3 SINE MIR -11 197 101 559 248 29 0 chr3 215975311 215975448 -11549130 + MIR SINE MIR 57 197 -65 676 234 12 123 chr3 215975471 215975572 -11549006 - MIR SINE MIR 0 262 151 2339 93 0 13 chr3 215975572 215975885 -11548693 + AluSc SINE Alu 1 309 0 676 234 12 123 chr3 215975885 215976035 -11548543 - MIR SINE MIR -111 151 39 7845 186 8 0 chr3 215976051 215976212 -11548366 + L1PA14 LINE L1 3793 3951 -2210 2311 110 3 0 chr3 215976212 215976522 -11548056 + AluSp SINE Alu 1 311 -2 7845 186 8 0 chr3 215976522 215978715 -11545863 + L1PA14 LINE L1 3951 6160 -1 5651 246 36 24 chr3 215978866 215980072 -11544506 + L1MDa LINE L1 2216 3406 -3134 1106 280 63 83 chr3 215980072 215980689 -11543889 - MER77 LTR ERV1 0 605 1 5651 246 36 24 chr3 215980689 215981168 -11543410 + L1MDa LINE L1 3406 3878 -2662 1438 241 41 0 chr3 215981168 215981459 -11543119 + AluJo SINE Alu 1 303 -9 5651 246 36 24 chr3 215981459 215982248 -11542330 + L1MDa LINE L1 3878 4715 -1825 * 10217 172 14 27 chr3 215982242 215984756 -11539822 + L1MA5 LINE L1 3296 5774 -526 2180 115 0 3 chr3 215984756 215985051 -11539527 + AluSg SINE Alu 1 294 -16 10217 172 14 27 chr3 215985051 215985259 -11539319 + L1MA5 LINE L1 5774 5983 -317 2687 173 32 19 chr3 215985263 215985855 -11538723 + L1MD1 LINE L1 5639 6242 0 2772 206 34 34 chr3 215985867 215986086 -11538492 + L1MD2 LINE L1 5606 5824 -535 1980 90 98 11 chr3 215986086 215986363 -11538215 + AluSc SINE Alu 1 301 -8 2772 206 34 34 chr3 215986363 215986887 -11537691 + L1MD2 LINE L1 5823 6349 -10 210 71 0 0 chr3 215987319 215987347 -11537231 + (A)n Simple_repeat Simple_repeat 1 28 0 298 273 9 9 chr3 215987522 215987632 -11536946 + MLT1K LTR MaLR 479 588 0 217 389 0 0 chr3 215987670 215987819 -11536759 + (CA)n Simple_repeat Simple_repeat 2 150 0 2243 261 126 40 chr3 215988457 215990040 -11534538 - L1MC4a LINE L1 -127 7681 5964 2437 71 3 0 chr3 215990455 215990765 -11533813 - AluY SINE Alu 0 311 1 314 255 38 0 chr3 215990795 215990901 -11533677 - L1MEd LINE L1 -4975 1144 1035 2188 39 0 0 chr3 215991077 215991332 -11533246 - AluY SINE Alu -16 295 41 2239 105 0 10 chr3 215991389 215991695 -11532883 - AluSx SINE Alu -7 305 3 387 341 39 1 chr3 215992270 215992409 -11532169 - MIR SINE MIR -46 162 19 347 250 0 11 chr3 215992611 215992699 -11531879 + MIR3 SINE MIR 111 197 -11 1417 211 189 62 chr3 215993142 215993173 -11531405 + L1ME2 LINE L1 5326 5352 -812 216 97 0 0 chr3 215993173 215993204 -11531374 + (TA)n Simple_repeat Simple_repeat 2 32 0 1417 211 189 62 chr3 215993204 215993908 -11530670 + L1ME2 LINE L1 5352 6154 -10 563 146 0 10 chr3 215994270 215994373 -11530205 + (TTCC)n Simple_repeat Simple_repeat 3 104 0 2059 158 3 0 chr3 215994375 215994686 -11529892 - AluSq SINE Alu -1 312 1 454 286 71 48 chr3 215994941 215995151 -11529427 + MIR SINE MIR 14 228 -34 2217 174 14 25 chr3 215995177 215995608 -11528970 - MSTB LTR MaLR 0 426 1 222 354 87 8 chr3 215995631 215995758 -11528820 + L2 LINE L2 3162 3298 -15 199 234 62 47 chr3 215996228 215996292 -11528286 + L2 LINE L2 3249 3313 0 205 320 0 0 chr3 215996361 215996411 -11528167 - MIR3 SINE MIR -15 193 144 504 271 124 17 chr3 215996423 215996843 -11527735 - LTR33A LTR ERVL -20 503 1 193 338 132 27 chr3 215997421 215997640 -11526938 - L2 LINE L2 -1027 2287 2046 5401 122 3 2 chr3 215997914 215998775 -11525803 + L1PA14 LINE L1 5299 6160 -1 * 5651 245 52 23 chr3 215998764 216000132 -11524446 + L1MDa LINE L1 2007 3334 -3206 1106 280 63 83 chr3 216000132 216000749 -11523829 - MER77 LTR ERV1 0 605 1 5651 245 52 23 chr3 216000749 216001228 -11523350 + L1MDa LINE L1 3334 3798 -2742 1438 241 41 0 chr3 216001228 216001519 -11523059 + AluJo SINE Alu 1 303 -9 5651 245 52 23 chr3 216001519 216002308 -11522270 + L1MDa LINE L1 3798 4715 -1825 * 10122 171 20 12 chr3 216002302 216004811 -11519767 + L1MA3 LINE L1 3296 5778 -513 2147 122 0 3 chr3 216004811 216005106 -11519472 + AluSg SINE Alu 1 294 -16 10122 171 20 12 chr3 216005106 216005313 -11519265 + L1MA3 LINE L1 5778 5982 -309 2687 173 32 19 chr3 216005318 216005910 -11518668 + L1MD1 LINE L1 5639 6242 0 1065 182 14 0 chr3 216005922 216006136 -11518442 + L1MC/D LINE L1 5606 5822 -537 1844 106 102 4 chr3 216006141 216006406 -11518172 + AluSc SINE Alu 1 291 -18 838 292 70 36 chr3 216007784 216008226 -11516352 - LTR16A1 LTR ERVL 0 457 1 226 188 175 75 chr3 216008734 216008814 -11515764 - MIR SINE MIR -15 193 106 1383 266 76 74 chr3 216008842 216008959 -11515619 - L2 LINE L2 -1 3312 3197 2307 94 0 3 chr3 216008959 216009256 -11515322 - AluSx SINE Alu -16 296 1 1383 266 76 74 chr3 216009256 216009866 -11514712 - L2 LINE L2 -116 3197 2549 668 216 173 0 chr3 216009876 216010061 -11514517 + MLT1D LTR MaLR 1 217 -288 3151 133 47 2 chr3 216010089 216010644 -11513934 + L1MA9 LINE L1 5717 6296 -16 1733 186 3 16 chr3 216010879 216011190 -11513388 - AluJo SINE Alu -3 309 3 361 330 9 16 chr3 216011192 216011352 -11513226 - MIR3 SINE MIR -65 143 1 243 321 123 0 chr3 216011665 216011771 -11512807 - L3 LINE CR1 -3 1574 1456 312 231 66 0 chr3 216012101 216012192 -11512386 + MER103 DNA DNA 69 165 -1 388 320 11 39 chr3 216012272 216012453 -11512125 + L2 LINE L2 2916 3091 -181 231 290 32 0 chr3 216012920 216012982 -11511596 - L2 LINE L2 -17 3255 3192 356 331 54 8 chr3 216013367 216013497 -11511081 - L2 LINE L2 0 3272 3137 295 267 242 37 chr3 216013467 216013628 -11510950 - MIR3 SINE MIR -11 197 4 * 477 0 0 0 chr3 216013772 216013825 -11510753 + (TG)n Simple_repeat Simple_repeat 2 54 0 207 98 73 0 chr3 216013879 216013920 -11510658 + A-rich Low_complexity Low_complexity 2 45 0 828 303 69 11 chr3 216014849 216015199 -11509379 - MLT1J2 LTR MaLR -18 432 63 342 291 57 35 chr3 216015602 216015743 -11508835 - MIR SINE MIR -70 192 49 412 255 35 48 chr3 216016764 216016909 -11507669 + MIR SINE MIR 47 189 -73 505 318 117 25 chr3 216016984 216017421 -11507157 - L3 LINE CR1 -57 1520 1044 252 0 0 0 chr3 216017837 216017865 -11506713 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 192 222 0 20 chr3 216017874 216017913 -11506665 - L2 LINE L2 -31 3282 3204 326 164 0 29 chr3 216019599 216019703 -11504875 + G-rich Low_complexity Low_complexity 1 101 0 35 24 0 0 chr3 216019703 216019745 -11504833 + GC_rich Low_complexity Low_complexity 1 42 0 700 197 177 35 chr3 216020017 216020215 -11504363 + MLT1D LTR MaLR 279 504 -1 292 261 174 7 chr3 216020220 216020358 -11504220 - L2 LINE L2 -781 2533 2373 255 308 171 8 chr3 216020811 216020928 -11503650 + MIR3 SINE MIR 35 170 -38 226 283 20 30 chr3 216021973 216022072 -11502506 - MIR SINE MIR -46 216 119 2167 98 0 3 chr3 216022111 216022434 -11502144 + AluSx SINE Alu 1 322 0 216 86 0 0 chr3 216022704 216022739 -11501839 + (T)n Simple_repeat Simple_repeat 1 35 0 332 293 26 0 chr3 216022846 216022962 -11501616 - HsTC2 DNA Tc2 -1524 374 256 297 51 0 0 chr3 216023615 216023654 -11500924 + (TG)n Simple_repeat Simple_repeat 1 39 0 223 217 43 14 chr3 216025097 216025166 -11499412 + MIR SINE MIR 76 146 -116 21 0 0 0 chr3 216025250 216025271 -11499307 + AT_rich Low_complexity Low_complexity 1 21 0 272 319 99 79 chr3 216025431 216025777 -11498801 - L2 LINE L2 -1 3312 2954 2073 126 3 10 chr3 216025777 216026078 -11498500 - AluSg SINE Alu -11 299 1 272 319 99 79 chr3 216026078 216026163 -11498415 - L2 LINE L2 -359 2954 2872 542 277 14 7 chr3 216026576 216026724 -11497854 + MIR SINE MIR 109 257 -5 2176 117 0 3 chr3 216026775 216027083 -11497495 + AluSq SINE Alu 1 307 -6 225 250 0 36 chr3 216027448 216027504 -11497074 + MIR3 SINE MIR 103 156 -52 2250 119 3 0 chr3 216027937 216028247 -11496331 - AluSx SINE Alu -1 311 1 562 237 36 29 chr3 216029207 216029346 -11495232 - MER5A DNA MER1_type -3 186 47 229 298 53 53 chr3 216030830 216030961 -11493617 - MIR SINE MIR -41 221 91 275 282 153 0 chr3 216031799 216031884 -11492694 - L2 LINE L2 -12 3260 3163 561 381 90 14 chr3 216032296 216032729 -11491849 + L3 LINE CR1 241 706 -871 1857 129 97 0 chr3 216032730 216033009 -11491569 + AluSx SINE Alu 1 306 -6 210 333 128 17 chr3 216033847 216033964 -11490614 - MIR SINE MIR -70 192 63 339 65 0 0 chr3 216034263 216034309 -11490269 + (TG)n Simple_repeat Simple_repeat 2 47 0 1415 221 58 77 chr3 216034736 216035188 -11489390 - MLT2B3 LTR ERVL 0 554 112 897 156 0 52 chr3 216035188 216035361 -11489217 - AluJo/FRAM SINE Alu -15 297 134 1803 79 9 4 chr3 216035361 216035590 -11488988 - AluSp SINE Alu -12 301 72 10421 41 5 0 chr3 216035597 216037371 -11487207 - L1PA5 LINE L1 -255 5899 4118 464 32 16 0 chr3 216037803 216037865 -11486713 + (TCTA)n Simple_repeat Simple_repeat 4 66 0 310 351 44 22 chr3 216038034 216038259 -11486319 - L1M4 LINE L1 -2574 4274 4045 1555 150 33 0 chr3 216038290 216038530 -11486048 - MSTC LTR MaLR 0 428 181 185 234 43 121 chr3 216039264 216039405 -11485173 - MIR3 SINE MIR -6 202 73 869 206 79 0 chr3 216040369 216040534 -11484044 - MER45A DNA AcHobo 0 178 1 457 317 7 28 chr3 216040731 216040876 -11483702 - MIR3 SINE MIR -62 146 5 2266 84 0 0 chr3 216042041 216042326 -11482252 - AluSx SINE Alu -27 285 1 233 324 47 47 chr3 216042592 216042740 -11481838 - MIR SINE MIR -68 194 47 217 295 0 0 chr3 216044603 216044668 -11479910 + G-rich Low_complexity Low_complexity 1 65 0 217 288 129 69 chr3 216045013 216045246 -11479332 + MIR SINE MIR 3 249 -13 210 268 76 70 chr3 216045521 216045678 -11478900 + L3 LINE CR1 1240 1397 -180 227 380 109 0 chr3 216046190 216046282 -11478296 + L2 LINE L2 3116 3217 -55 776 259 31 18 chr3 216046512 216046736 -11477842 - MIR SINE MIR -30 232 6 379 347 102 40 chr3 216047853 216048127 -11476451 - L2 LINE L2 -41 3231 2941 1021 122 100 44 chr3 216048823 216049003 -11475575 - MSTC LTR MaLR -238 190 1 406 297 46 41 chr3 216049004 216049371 -11475207 - L1M4 LINE L1 -2856 3992 3624 22 35 0 0 chr3 216049556 216049585 -11474993 + AT_rich Low_complexity Low_complexity 1 29 0 303 345 77 48 chr3 216049646 216049997 -11474581 - L1M4 LINE L1 -3629 3219 2859 577 315 28 14 chr3 216050093 216050309 -11474269 + MIR SINE MIR 44 262 0 840 263 18 60 chr3 216050445 216050730 -11473848 - L1ME1 LINE L1 -5 6161 5889 244 242 58 67 chr3 216051037 216051157 -11473421 - HAL1 LINE L1 -825 1682 1564 652 251 141 0 chr3 216051338 216051501 -11473077 - MER5A DNA MER1_type 0 189 4 332 278 189 50 chr3 216052003 216052421 -11472157 - L1M4 LINE L1 -5723 1126 651 234 301 60 12 chr3 216054893 216054976 -11469602 - L2 LINE L2 -17 3255 3169 193 259 106 59 chr3 216055392 216055477 -11469101 + MIR SINE MIR 34 122 -86 4883 221 49 15 chr3 216056034 216057380 -11467198 - Charlie1a DNA MER1_type 0 1455 1 282 248 97 18 chr3 216057857 216057970 -11466608 + MIR SINE MIR 31 152 -56 193 268 0 0 chr3 216059871 216059927 -11464651 + L2 LINE L2 3004 3059 -213 258 54 0 54 chr3 216061268 216061324 -11463254 + (TAA)n Simple_repeat Simple_repeat 1 53 0 287 222 254 79 chr3 216061327 216061516 -11463062 - MIR SINE MIR -10 252 31 415 204 82 20 chr3 216061697 216061795 -11462783 + MIR SINE MIR 108 211 -51 336 345 149 44 chr3 216061776 216062566 -11462012 + L2 LINE L2 2235 3111 -161 * 998 219 42 5 chr3 216062622 216062837 -11461741 + MER58A DNA MER1_type 1 223 -1 257 250 313 0 chr3 216063711 216063823 -11460755 + MIR SINE MIR 104 250 -12 183 248 132 50 chr3 216065115 216065236 -11459342 - L3 LINE CR1 -174 1403 1273 1266 95 54 0 chr3 216065583 216065751 -11458827 + L1PA10 LINE L1 5977 6153 -15 207 0 0 0 chr3 216065803 216065826 -11458752 + (CAAAA)n Simple_repeat Simple_repeat 3 25 0 415 296 90 74 chr3 216065917 216066349 -11458229 + L2 LINE L2 2875 3313 0 283 326 8 52 chr3 216066480 216066636 -11457942 - MIR SINE MIR -58 150 20 594 112 0 11 chr3 216066771 216066860 -11457718 - L1MC1 LINE L1 0 6333 6246 235 377 101 0 chr3 216067628 216067766 -11456812 - L3 LINE CR1 -1 1576 1425 3041 238 68 91 chr3 216069392 216071087 -11453491 - L1ME1 LINE L1 -8 6158 4425 302 222 0 0 chr3 216071087 216071141 -11453437 + Tigger5 DNA MER2_type 2 55 -2268 * 320 222 14 14 chr3 216071110 216071182 -11453396 + Tigger5 DNA MER2_type 2251 2322 -1 * 3041 238 68 91 chr3 216071141 216071197 -11453381 - L1ME1 LINE L1 -1741 4425 4369 369 256 23 0 chr3 216071197 216071283 -11453295 - Tigger5 DNA MER2_type -2235 88 1 3041 238 68 91 chr3 216071283 216072050 -11452528 - L1ME1 LINE L1 -1797 4369 3589 * 11788 26 0 0 chr3 216072027 216073391 -11451187 - L1P LINE L1 -944 5202 3839 1887 32 0 0 chr3 216073391 216073653 -11450925 + L1PA3 LINE L1 5915 6176 0 2089 91 0 4 chr3 216073965 216074262 -11450316 - AluSx SINE Alu 0 317 22 4506 150 21 33 chr3 216075604 216075890 -11448688 + L1MB2 LINE L1 5411 5699 -472 2132 108 0 7 chr3 216075890 216076177 -11448401 - AluSg1 SINE Alu -24 285 1 4506 150 21 33 chr3 216076177 216076658 -11447920 + L1MB2 LINE L1 5699 6169 -2 22 35 0 0 chr3 216076661 216076690 -11447888 + AT_rich Low_complexity Low_complexity 1 29 0 2114 138 41 24 chr3 216077234 216077603 -11446975 + THE1C LTR MaLR 1 375 0 9656 114 37 49 chr3 216077603 216079198 -11445380 + THE1C-int LTR MaLR 1 1576 -4 1852 162 62 63 chr3 216079202 216079637 -11444941 + THE1C LTR MaLR 1 375 0 195 436 10 0 chr3 216080387 216080488 -11444090 - L2 LINE L2 -195 3077 2976 434 218 49 63 chr3 216081008 216081150 -11443428 + MLT1J2 LTR MaLR 1 140 -310 354 256 0 12 chr3 216081324 216081410 -11443168 + MLT1I LTR MaLR 318 402 -7 203 133 0 0 chr3 216081797 216081827 -11442751 + (TG)n Simple_repeat Simple_repeat 1 30 0 427 245 9 0 chr3 216082356 216082462 -11442116 - MIR3 SINE MIR -24 184 78 199 243 9 122 chr3 216082540 216082647 -11441931 - MIR SINE MIR -66 196 102 311 158 18 0 chr3 216082666 216082723 -11441855 - L2 LINE L2 0 3313 3256 206 298 69 61 chr3 216083896 216084027 -11440551 - L2 LINE L2 -5 3267 3136 197 194 0 16 chr3 216084603 216084665 -11439913 + GA-rich Low_complexity Low_complexity 3 63 0 209 216 0 0 chr3 216084667 216084704 -11439874 + (CATATA)n Simple_repeat Simple_repeat 6 42 0 215 297 27 0 chr3 216084722 216084796 -11439782 - MIR SINE MIR -65 197 122 339 264 34 40 chr3 216085334 216085482 -11439096 + MIR SINE MIR 54 200 -62 531 0 0 0 chr3 216085923 216085982 -11438596 + (TG)n Simple_repeat Simple_repeat 2 60 0 360 368 56 13 chr3 216086680 216086911 -11437667 + MIR SINE MIR 9 249 -13 184 143 29 0 chr3 216087471 216087506 -11437072 - MIR3 SINE MIR -18 190 155 26 30 0 0 chr3 216088209 216088242 -11436336 + AT_rich Low_complexity Low_complexity 1 33 0 600 150 222 0 chr3 216088483 216088636 -11435942 + MER53 DNA DNA 1 187 -2 355 279 48 24 chr3 216088707 216088872 -11435706 - MIR SINE MIR -46 216 48 1213 98 0 0 chr3 216088892 216089045 -11435533 - AluSp SINE Alu -24 289 137 2564 229 72 17 chr3 216089067 216089827 -11434751 - L1MC4a LINE L1 0 7808 7007 368 277 21 0 chr3 216091331 216091425 -11433153 - MER94 DNA DNA -4 130 35 2223 108 0 0 chr3 216092658 216092944 -11431634 - AluSg SINE Alu -19 291 6 187 261 151 42 chr3 216093370 216093489 -11431089 + MIR3 SINE MIR 58 189 -19 271 253 32 63 chr3 216093982 216094077 -11430501 - MIR SINE MIR -85 123 32 278 267 44 22 chr3 216095871 216095961 -11428617 + MIR SINE MIR 24 115 -93 34 65 0 0 chr3 216096244 216096306 -11428272 + GC_rich Low_complexity Low_complexity 1 62 0 23 92 0 0 chr3 216096393 216096458 -11428120 + GC_rich Low_complexity Low_complexity 1 65 0 252 0 0 0 chr3 216196874 216196902 -11327676 + (TA)n Simple_repeat Simple_repeat 1 28 0 1072 338 68 11 chr3 216196907 216197433 -11327145 + HERVL LTR ERVL 3843 4398 -1256 338 352 62 17 chr3 216197605 216197784 -11326794 - MIR SINE MIR -66 196 10 196 197 61 91 chr3 216197837 216197903 -11326675 + L2 LINE L2 3200 3263 -9 1799 288 37 11 chr3 216198088 216198629 -11325949 - MLT1H1 LTR MaLR 0 555 1 279 307 13 0 chr3 216198853 216198928 -11325650 + MIR SINE MIR 76 151 -57 1509 226 61 9 chr3 216198956 216199301 -11325277 - MLT1A1 LTR MaLR 0 365 3 21 57 0 0 chr3 216199327 216199362 -11325216 + AT_rich Low_complexity Low_complexity 1 35 0 1899 168 38 15 chr3 216199378 216199718 -11324860 - MER7A DNA MER2_type 0 346 1 477 272 72 33 chr3 216200555 216200735 -11323843 - MIR3 SINE MIR -6 202 16 289 328 8 17 chr3 216200770 216200889 -11323689 - MIR3 SINE MIR -13 195 78 291 349 146 5 chr3 216201495 216201687 -11322891 + MIR SINE MIR 31 249 -13 351 167 0 17 chr3 216202108 216202168 -11322410 - tRNA-Lys-AAA tRNA tRNA -17 59 1 2735 37 0 0 chr3 216202171 216202499 -11322079 + L1PA5 LINE L1 5827 6154 0 302 341 23 17 chr3 216203260 216203436 -11321142 + CT-rich Low_complexity Low_complexity 2 178 0 268 368 50 67 chr3 216204325 216204667 -11319911 + L2 LINE L2 2924 3259 -13 794 236 44 22 chr3 216204749 216204978 -11319600 - L1ME1 LINE L1 -5 6161 5928 873 210 118 0 chr3 216204978 216205164 -11319414 + MER3 DNA MER1_type 1 208 -1 437 216 22 52 chr3 216205167 216205301 -11319277 - L1ME1 LINE L1 -233 5933 5804 1464 239 39 15 chr3 216205460 216205790 -11318788 - MLT1A1 LTR MaLR -27 338 1 2788 164 17 2 chr3 216206475 216207004 -11317574 - L1MA9 LINE L1 0 7272 6736 243 88 0 0 chr3 216207014 216207048 -11317530 + (TG)n Simple_repeat Simple_repeat 2 35 0 612 110 0 30 chr3 216207073 216207173 -11317405 - L1PB4 LINE L1 -13 6143 6047 432 192 0 13 chr3 216207175 216207253 -11317325 + Charlie3 DNA MER1_type 1 77 -2633 252 206 54 65 chr3 216207220 216207312 -11317266 + Charlie3 DNA MER1_type 203 293 -2417 * 4127 198 37 4 chr3 216207869 216209211 -11315367 - L1MA9 LINE L1 -536 6736 5343 1197 201 33 20 chr3 216209216 216209519 -11315059 + L1 LINE L1 3566 3872 -2274 886 253 88 49 chr3 216209518 216210020 -11314558 - L1MA9 LINE L1 -5299 1731 93 * 2214 113 0 3 chr3 216210544 216210855 -11313723 + AluSq SINE Alu 1 310 -3 649 218 8 16 chr3 216210865 216210989 -11313589 - MER5A DNA MER1_type -66 123 1 380 336 27 9 chr3 216211745 216211855 -11312723 + MIR3 SINE MIR 3 114 -94 202 228 105 97 chr3 216212862 216212976 -11311602 - MIR SINE MIR -85 177 63 476 145 0 0 chr3 216213008 216213077 -11311501 + Tigger2 DNA MER2_type 1 69 -2649 * 1456 128 161 77 chr3 216213061 216213414 -11311164 + Tigger2 DNA MER2_type 2267 2649 -69 1485 236 62 57 chr3 216213415 216213861 -11310717 + MLT2B1 LTR ERVL 31 481 -39 207 69 0 0 chr3 216213861 216213890 -11310688 + (CA)n Simple_repeat Simple_repeat 2 30 0 1485 236 62 57 chr3 216213890 216213931 -11310647 + MLT2B1 LTR ERVL 481 520 0 194 273 0 0 chr3 216214223 216214267 -11310311 - MIR3 SINE MIR -32 176 133 2688 35 0 0 chr3 216214401 216214711 -11309867 - AluY SINE Alu -1 310 1 230 354 0 0 chr3 216214942 216215024 -11309554 + MIR SINE MIR 67 148 -60 362 336 113 9 chr3 216216522 216216751 -11307827 - MIR SINE MIR -2 260 8 546 276 71 108 chr3 216216958 216217392 -11307186 + MLT1J2 LTR MaLR 6 423 -27 986 194 50 92 chr3 216217491 216218012 -11306566 + L1MC5 LINE L1 7426 7924 -37 331 310 35 18 chr3 216218805 216218918 -11305660 + MIR SINE MIR 33 147 -61 288 356 14 77 chr3 216219571 216219779 -11304799 - L2 LINE L2 -216 3056 2862 704 314 15 0 chr3 216220624 216220828 -11303750 + MIR SINE MIR 13 219 -43 1985 130 7 3 chr3 216220840 216221305 -11303273 + AluSx SINE Alu 11 476 0 1352 44 6 6 chr3 216221125 216221350 -11303228 + (GAAA)n Simple_repeat Simple_repeat 1 225 0 226 332 106 85 chr3 216221452 216221783 -11302795 + L2 LINE L2 2845 3182 -90 309 297 146 50 chr3 216222556 216223021 -11301557 + L1ME LINE L1 2401 2910 -3236 34 65 0 0 chr3 216223217 216223279 -11301299 + AT_rich Low_complexity Low_complexity 1 62 0 287 267 183 21 chr3 216223598 216223789 -11300789 + L1ME LINE L1 5523 5744 -426 1136 245 68 83 chr3 216224061 216224159 -11300419 + HAL1b LINE L1 353 451 -897 2420 156 44 0 chr3 216224159 216224569 -11300009 + MSTA LTR MaLR 1 428 0 1136 245 68 83 chr3 216224569 216225086 -11299492 + HAL1b LINE L1 451 959 -389 2484 162 61 0 chr3 216225088 216225550 -11299028 - L1MC1 LINE L1 -8 6605 6116 2945 153 36 14 chr3 216225550 216226055 -11298523 - MER34 LTR ERV1 0 542 27 8097 238 38 22 chr3 216226060 216227772 -11296806 - L1MC1 LINE L1 -488 6125 4442 1988 158 0 22 chr3 216227772 216228083 -11296495 + AluSx SINE Alu 1 304 -8 8097 238 38 22 chr3 216228083 216228849 -11295729 - L1MC1 LINE L1 -2171 4442 3690 2146 76 0 14 chr3 216228849 216229125 -11295453 - AluY SINE Alu -39 272 1 8097 238 38 22 chr3 216229125 216229834 -11294744 - L1MC1 LINE L1 -2923 3690 2907 359 303 21 0 chr3 216229901 216230046 -11294532 - L1MC1 LINE L1 -3649 2777 2630 251 98 22 4 chr3 216230103 216230158 -11294420 - L1MC1 LINE L1 -1 6343 6285 4966 174 92 53 chr3 216230158 216230696 -11293882 - L1MC1 LINE L1 -3947 2479 1963 2520 110 30 3 chr3 216230696 216231061 -11293517 + THE1C LTR MaLR 1 375 0 4966 174 92 53 chr3 216231061 216231235 -11293343 - L1MC1 LINE L1 -4463 1963 1797 2404 60 0 13 chr3 216231235 216231560 -11293018 - AluY SINE Alu 0 311 1 4966 174 92 53 chr3 216231560 216232368 -11292210 - L1MC1 LINE L1 -4629 1797 978 4280 132 39 21 chr3 216232371 216233070 -11291508 - MER50 LTR ERV1 -23 711 1 4323 186 27 74 chr3 216233070 216234076 -11290502 - L1MC1 LINE L1 -5447 979 21 241 244 55 31 chr3 216234085 216234212 -11290366 + HAL1b LINE L1 952 1081 -267 2143 101 6 31 chr3 216234372 216234689 -11289889 - AluSq SINE Alu -4 309 1 24 67 0 0 chr3 216234790 216234835 -11289743 + AT_rich Low_complexity Low_complexity 1 45 0 1517 185 6 78 chr3 216235156 216235491 -11289087 - AluJb SINE Alu -1 311 1 1718 35 0 0 chr3 216235534 216235737 -11288841 - L1PA5 LINE L1 -13 6141 5939 454 296 83 89 chr3 216235742 216236270 -11288308 - HAL1 LINE L1 -1165 1342 818 209 246 0 18 chr3 216236926 216236983 -11287595 + (TA)n Simple_repeat Simple_repeat 1 56 0 2060 115 0 22 chr3 216236989 216237301 -11287277 - AluSx SINE Alu -7 305 1 198 0 0 0 chr3 216237518 216237540 -11287038 + (TG)n Simple_repeat Simple_repeat 1 22 0 2115 112 3 3 chr3 216238210 216238505 -11286073 + AluSg SINE Alu 1 295 -15 25 51 0 0 chr3 216238907 216238946 -11285632 + AT_rich Low_complexity Low_complexity 1 39 0 1319 189 68 12 chr3 216239108 216239356 -11285222 + Tigger7 DNA MER2_type 1 262 -471 568 190 0 20 chr3 216239363 216239463 -11285115 + Tigger7 DNA MER2_type 2394 2491 0 30 0 0 0 chr3 216239886 216239916 -11284662 + AT_rich Low_complexity Low_complexity 1 30 0 221 309 43 32 chr3 216240269 216240363 -11284215 + MIR SINE MIR 24 118 -90 431 265 35 50 chr3 216240435 216240635 -11283943 + MIR3 SINE MIR 12 208 0 1517 87 53 10 chr3 216240916 216241124 -11283454 - AluSx SINE Alu -95 217 1 192 250 83 0 chr3 216242013 216242073 -11282505 + L2 LINE L2 2995 3059 -254 21 0 0 0 chr3 216242180 216242201 -11282377 + AT_rich Low_complexity Low_complexity 1 21 0 2241 101 0 0 chr3 216242201 216242489 -11282089 - AluSx SINE Alu -24 288 1 518 295 58 0 chr3 216243043 216243216 -11281362 + MIR3 SINE MIR 16 198 -10 231 260 55 14 chr3 216243730 216243803 -11280775 - MIR SINE MIR -69 193 118 1297 188 10 17 chr3 216246429 216246721 -11277857 + L1MC4 LINE L1 6788 7077 -965 2366 56 0 0 chr3 216246916 216247201 -11277377 + AluY SINE Alu 1 285 -26 207 0 0 0 chr3 216247204 216247227 -11277351 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 299 162 114 48 chr3 216247688 216247793 -11276785 - HAL1b LINE L1 -5 1343 1232 23 54 0 0 chr3 216247911 216247948 -11276630 + AT_rich Low_complexity Low_complexity 1 37 0 702 262 30 6 chr3 216248127 216248295 -11276283 + LTR33 LTR ERVL 1 172 -349 483 247 53 41 chr3 216248407 216248577 -11276001 + LTR33 LTR ERVL 345 516 -5 308 262 66 25 chr3 216248653 216248775 -11275803 - HAL1 LINE L1 -134 2373 2247 437 273 107 0 chr3 216249328 216249478 -11275100 + L2 LINE L2 2373 2538 -776 197 315 67 34 chr3 216249494 216249583 -11274995 - MIR SINE MIR -100 162 71 278 284 30 82 chr3 216250614 216250748 -11273830 + MIR3 SINE MIR 15 141 -67 236 282 103 40 chr3 216251133 216251307 -11273271 - MIR SINE MIR -15 247 63 195 328 47 16 chr3 216251454 216251518 -11273060 + MIR3 SINE MIR 103 168 -40 2079 140 19 40 chr3 216252913 216253285 -11271293 + THE1B LTR MaLR 1 364 0 209 306 60 37 chr3 216253829 216253963 -11270615 - L2 LINE L2 0 3272 3136 244 357 71 9 chr3 216254084 216254196 -11270382 - L2 LINE L2 0 3272 3154 291 270 53 92 chr3 216254243 216254395 -11270183 + MARNA DNA Mariner 387 532 -54 183 275 125 19 chr3 216254419 216254548 -11270030 + MIR SINE MIR 1 142 -66 186 43 0 0 chr3 216255158 216255181 -11269397 + (A)n Simple_repeat Simple_repeat 1 23 0 993 216 20 5 chr3 216255274 216255478 -11269100 - MER6B DNA MER2_type -3 207 1 21 36 0 0 chr3 216255887 216255915 -11268663 + AT_rich Low_complexity Low_complexity 1 28 0 376 257 20 144 chr3 216256363 216256464 -11268114 - MIR3 SINE MIR 0 208 143 1457 185 7 52 chr3 216256464 216256772 -11267806 + AluJo SINE Alu 1 294 -18 376 257 20 144 chr3 216256772 216256872 -11267706 - MIR3 SINE MIR -65 143 32 186 358 165 0 chr3 216256901 216257010 -11267568 - L2 LINE L2 -17 3255 3129 21 0 0 0 chr3 216257394 216257415 -11267163 + AT_rich Low_complexity Low_complexity 1 21 0 554 318 70 29 chr3 216257415 216258305 -11266273 + L1ME3A LINE L1 4999 5923 -247 23 78 0 0 chr3 216258474 216258525 -11266053 + AT_rich Low_complexity Low_complexity 1 51 0 34 55 0 0 chr3 216258586 216258641 -11265937 + AT_rich Low_complexity Low_complexity 1 55 0 508 193 51 74 chr3 216258780 216258956 -11265622 + L1MC5 LINE L1 7723 7894 -67 22 103 0 0 chr3 216259383 216259461 -11265117 + AT_rich Low_complexity Low_complexity 1 78 0 21 0 0 0 chr3 216260336 216260357 -11264221 + AT_rich Low_complexity Low_complexity 1 21 0 536 72 0 24 chr3 216260453 216260536 -11264042 + (TTCC)n Simple_repeat Simple_repeat 4 84 0 * 557 144 10 0 chr3 216260533 216260637 -11263941 + CT-rich Low_complexity Low_complexity 3 107 0 831 42 28 35 chr3 216260637 216260780 -11263798 + (TTTC)n Simple_repeat Simple_repeat 3 144 0 580 311 39 72 chr3 216260858 216261688 -11262890 - HAL1 LINE L1 -714 1793 992 4118 176 98 10 chr3 216262619 216263495 -11261083 - L1MA7 LINE L1 -2 6289 5337 1351 181 19 0 chr3 216263501 216263760 -11260818 - L1MA7 LINE L1 -1036 5110 4847 934 211 53 20 chr3 216264072 216264318 -11260260 + L1MD3 LINE L1 7733 7986 -9 369 0 0 0 chr3 216264323 216264364 -11260214 + (CA)n Simple_repeat Simple_repeat 2 42 0 187 340 0 0 chr3 216264684 216264737 -11259841 - L2 LINE L2 -1 3271 3219 210 219 0 0 chr3 216265614 216265655 -11258923 - L2 LINE L2 -6 3307 3267 2249 92 0 0 chr3 216265804 216266087 -11258491 + AluSg SINE Alu 1 283 -27 186 43 0 0 chr3 216266312 216266335 -11258243 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 446 277 176 33 chr3 216266728 216267121 -11257457 - L1ME3A LINE L1 -219 5951 5503 2177 121 0 0 chr3 216267587 216267877 -11256701 + AluSg SINE Alu 1 290 -20 223 125 0 0 chr3 216268399 216268431 -11256147 - MIR SINE MIR -58 150 119 23 33 0 0 chr3 216269117 216269147 -11255431 + AT_rich Low_complexity Low_complexity 1 30 0 192 219 0 0 chr3 216269216 216269257 -11255321 - MIR SINE MIR -108 154 114 293 304 50 50 chr3 216269335 216269496 -11255082 - MIR3 SINE MIR -35 173 13 188 271 62 0 chr3 216269928 216269976 -11254602 + MIR SINE MIR 99 149 -113 727 308 94 0 chr3 216270128 216270362 -11254216 + MIR SINE MIR 2 257 -5 24 0 0 0 chr3 216270362 216270386 -11254192 + AT_rich Low_complexity Low_complexity 1 24 0 6989 49 20 11 chr3 216270668 216270951 -11253627 - L1P3 LINE L1 -390 5764 5485 2340 97 0 6 chr3 216270951 216271262 -11253316 - AluSg SINE Alu -1 309 1 6989 49 20 11 chr3 216271262 216272271 -11252307 - L1P3 LINE L1 -669 5485 4455 6541 39 1 0 chr3 216272270 216273061 -11251517 + L1P3 LINE L1 3651 4442 -1704 * 31 68 0 0 chr3 216273247 216273306 -11251272 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr3 216273668 216273689 -11250889 + AT_rich Low_complexity Low_complexity 1 21 0 444 261 22 22 chr3 216274222 216274356 -11250222 + MER5A DNA MER1_type 5 138 -51 200 283 0 0 chr3 216274488 216274534 -11250044 + MER5A DNA MER1_type 143 188 -1 408 256 120 8 chr3 216275200 216275317 -11249261 + MER5B DNA MER1_type 1 130 -48 3746 220 3 25 chr3 216275341 216275813 -11248765 - L1P LINE L1 -1935 4211 3765 2033 120 6 43 chr3 216275813 216276137 -11248441 - AluSx SINE Alu 0 312 1 3746 220 3 25 chr3 216276137 216276533 -11248045 - L1P LINE L1 -2381 3765 3362 2767 203 3 15 chr3 216276525 216277137 -11247441 + L1 LINE L1 4228 4832 -1314 * 5287 147 15 1 chr3 216277149 216278319 -11246259 + L1PA16 LINE L1 4975 6157 -9 216 224 0 20 chr3 216278337 216278386 -11246192 - MER5B DNA MER1_type -129 49 2 237 314 116 0 chr3 216278426 216278512 -11246066 - MIR SINE MIR -114 148 53 270 0 0 0 chr3 216279148 216279178 -11245400 + (TG)n Simple_repeat Simple_repeat 2 31 0 4021 316 17 19 chr3 216279787 216281425 -11243153 + L1PBa LINE L1 3 1637 -5226 2103 210 26 12 chr3 216281393 216287423 -11237155 + L1PB3 LINE L1 1 6204 -7 * 23 0 0 0 chr3 216287423 216287446 -11237132 + AT_rich Low_complexity Low_complexity 1 23 0 369 0 0 0 chr3 216287690 216287731 -11236847 + (TG)n Simple_repeat Simple_repeat 2 42 0 578 338 13 41 chr3 216287742 216288130 -11236448 + ERVL LTR ERVL 3881 4257 -1507 2159 122 0 16 chr3 216288526 216288837 -11235741 - AluSx SINE Alu -2 310 5 332 355 101 18 chr3 216289158 216289386 -11235192 - ERVL LTR ERVL -2167 3597 3351 21 0 0 0 chr3 216289426 216289447 -11235131 + AT_rich Low_complexity Low_complexity 1 21 0 398 299 132 29 chr3 216289458 216289836 -11234742 + L1ME3A LINE L1 1930 2346 -4050 305 256 6 38 chr3 216289837 216289997 -11234581 + (TA)n Simple_repeat Simple_repeat 1 155 0 436 72 72 0 chr3 216290051 216290148 -11234430 + (TATAG)n Simple_repeat Simple_repeat 2 105 0 209 55 0 91 chr3 216290148 216290203 -11234375 + (TA)n Simple_repeat Simple_repeat 1 50 0 998 245 77 59 chr3 216290203 216291004 -11233574 + L1ME3A LINE L1 2289 3104 -3111 485 263 8 23 chr3 216291270 216291403 -11233175 - MLT1J2 LTR MaLR -275 175 45 616 292 87 15 chr3 216291472 216291934 -11232644 + L1ME3A LINE L1 4383 4877 -1338 371 78 61 2 chr3 216291955 216292191 -11232387 + AluSp SINE Alu 1 295 -8 267 103 0 0 chr3 216292304 216292343 -11232235 + (T)n Simple_repeat Simple_repeat 1 39 0 417 70 0 0 chr3 216292407 216292464 -11232114 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 1158 107 6 28 chr3 216292466 216292644 -11231934 - L1PA8A LINE L1 -8 6123 5950 759 140 53 47 chr3 216293033 216293183 -11231395 + FAM SINE Alu 1 43 -6 337 262 86 68 chr3 216293257 216293581 -11230997 + L1ME3A LINE L1 5026 5355 -860 4489 48 0 0 chr3 216293588 216294155 -11230423 - L1P LINE L1 -3597 2549 1983 7577 23 3 2 chr3 216294155 216295659 -11228919 + L1PA4 LINE L1 4648 6152 -3 1538 261 30 36 chr3 216295690 216296335 -11228243 + L1ME3A LINE L1 5389 6029 -210 225 322 0 0 chr3 216296619 216296706 -11227872 - L2 LINE L2 -1441 1873 1787 225 266 32 75 chr3 216296991 216297085 -11227493 - MLT1L LTR MaLR -361 254 165 1238 254 53 29 chr3 216297138 216297587 -11226991 - LTR40b LTR ERVL -2 460 1 280 291 47 0 chr3 216298046 216298132 -11226446 + MIR3 SINE MIR 115 204 -4 2103 85 0 85 chr3 216298223 216298541 -11226037 - AluSg1 SINE Alu -16 293 3 243 0 0 0 chr3 216299147 216299174 -11225404 + (TG)n Simple_repeat Simple_repeat 1 27 0 239 404 60 0 chr3 216299245 216299396 -11225182 + L2 LINE L2 3107 3266 -6 480 277 73 15 chr3 216299408 216299545 -11225033 - MIR3 SINE MIR -45 163 19 312 27 0 0 chr3 216299833 216299870 -11224708 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 39 38 0 0 chr3 216299954 216300007 -11224571 + AT_rich Low_complexity Low_complexity 1 53 0 1456 184 60 0 chr3 216300008 216300163 -11224415 - AluJo SINE Alu -25 287 108 281 64 43 0 chr3 216300163 216300210 -11224368 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 1456 184 60 0 chr3 216300210 216300321 -11224257 - AluJo SINE Alu -204 108 5 240 295 64 20 chr3 216300507 216300632 -11223946 + MIR SINE MIR 25 131 -77 395 286 69 42 chr3 216301210 216301399 -11223179 + MIR SINE MIR 59 252 -10 27 87 0 0 chr3 216301600 216301669 -11222909 + AT_rich Low_complexity Low_complexity 1 69 0 396 59 0 0 chr3 216302272 216302323 -11222255 + (TCTA)n Simple_repeat Simple_repeat 4 54 0 2112 102 0 34 chr3 216302323 216302617 -11221961 - AluSg SINE Alu -26 284 1 270 127 42 0 chr3 216304208 216304279 -11220299 + (TA)n Simple_repeat Simple_repeat 2 75 0 193 346 126 16 chr3 216307375 216307502 -11217076 - MIR3 SINE MIR -48 160 20 236 347 132 25 chr3 216308311 216308432 -11216146 + L2 LINE L2 3122 3255 -17 257 326 47 0 chr3 216308984 216309070 -11215508 - MIR SINE MIR -127 135 46 257 286 152 0 chr3 216309105 216309210 -11215368 + MIR SINE MIR 88 208 -54 2136 234 73 48 chr3 216310825 216311534 -11213044 + L1MA8 LINE L1 466 1192 -6297 3328 249 35 34 chr3 216311549 216312783 -11211795 + L1MA8 LINE L1 2011 3245 -4320 4376 184 61 6 chr3 216312784 216313812 -11210766 + L1MA8 LINE L1 5785 6861 -743 1297 173 135 3 chr3 216313822 216314111 -11210467 + L1MA8 LINE L1 7373 7699 -11 1231 249 102 0 chr3 216314133 216314623 -11209955 - MER114 LTR ERV -56 592 53 21 0 0 0 chr3 216314904 216314925 -11209653 + AT_rich Low_complexity Low_complexity 1 21 0 749 100 107 0 chr3 216314970 216315110 -11209468 + L1M LINE L1 5257 5411 -880 251 376 46 0 chr3 216316337 216316446 -11208132 - L2 LINE L2 -22 3291 3178 2402 73 7 0 chr3 216316478 216316778 -11207800 - AluSg SINE Alu -8 302 1 315 0 0 0 chr3 216316824 216316859 -11207719 + (TG)n Simple_repeat Simple_repeat 2 36 0 281 279 36 57 chr3 216317436 216317576 -11207002 + MIR SINE MIR 76 212 -50 29 70 0 0 chr3 216317611 216317668 -11206910 + AT_rich Low_complexity Low_complexity 1 57 0 1311 238 25 20 chr3 216318119 216318472 -11206106 - MLT1A1 LTR MaLR 0 365 11 318 212 12 47 chr3 216318609 216318694 -11205884 - MLT1J LTR MaLR -43 468 387 1051 184 130 6 chr3 216318786 216319117 -11205461 + Charlie1 DNA MER1_type 2339 2710 -51 257 228 141 0 chr3 216319126 216319218 -11205360 - MLT1J LTR MaLR -396 115 11 507 345 51 15 chr3 216319255 216319666 -11204912 - L1ME3A LINE L1 -224 5946 5521 451 251 80 51 chr3 216319833 216320008 -11204570 - MLT1L LTR MaLR -70 545 366 409 263 32 21 chr3 216320393 216320583 -11203995 - L1MCa LINE L1 -4051 2556 2365 1029 191 6 0 chr3 216320608 216320786 -11203792 - AluJb SINE Alu 0 312 134 3386 177 25 36 chr3 216320800 216321048 -11203530 - L1MB8 LINE L1 -25 6153 5904 2300 100 3 0 chr3 216321048 216321347 -11203231 + AluSp SINE Alu 9 308 -5 3386 177 25 36 chr3 216321347 216321814 -11202764 - L1MB8 LINE L1 -274 5904 5446 279 289 21 28 chr3 216321882 216322024 -11202554 + L1MEc LINE L1 1696 1836 -4560 189 0 0 0 chr3 216322074 216322095 -11202483 + (TAA)n Simple_repeat Simple_repeat 2 22 0 21 0 0 0 chr3 216322457 216322478 -11202100 + AT_rich Low_complexity Low_complexity 1 21 0 326 288 162 40 chr3 216322543 216322765 -11201813 + MLT1K LTR MaLR 319 567 -21 215 356 11 11 chr3 216323654 216323744 -11200834 - MIR SINE MIR -116 146 57 602 265 97 8 chr3 216323810 216324173 -11200405 - MLT1J2 LTR MaLR 0 472 42 368 218 23 11 chr3 216324353 216324440 -11200138 - MLT1J LTR MaLR 0 511 424 180 0 0 0 chr3 216324583 216324603 -11199975 + (A)n Simple_repeat Simple_repeat 1 20 0 314 269 52 70 chr3 216324892 216325178 -11199400 - L1MCa LINE L1 -4771 1836 1380 218 368 104 9 chr3 216325479 216325585 -11198993 - L2 LINE L2 -5 3267 3152 537 284 162 0 chr3 216325698 216325846 -11198732 + MIR SINE MIR 9 180 -82 1748 272 64 29 chr3 216326122 216326667 -11197911 + MLT1E LTR MaLR 27 590 -3 27 0 0 0 chr3 216326694 216326721 -11197857 + AT_rich Low_complexity Low_complexity 1 27 0 1582 135 0 4 chr3 216326809 216327064 -11197514 + AluJb SINE Alu 54 307 0 207 272 136 39 chr3 216327891 216327983 -11196595 + L2 LINE L2 2875 2979 -293 2253 106 0 3 chr3 216327983 216328275 -11196303 - AluSq SINE Alu -20 293 3 27 62 0 0 chr3 216328473 216328521 -11196057 + AT_rich Low_complexity Low_complexity 1 48 0 706 319 40 26 chr3 216329470 216329849 -11194729 + L1MEc LINE L1 35 418 -5978 405 289 41 37 chr3 216329902 216330144 -11194434 + L1MEc LINE L1 509 751 -5645 281 154 0 0 chr3 216330156 216330208 -11194370 + L1MC4 LINE L1 6754 6805 -1237 * 1133 269 40 32 chr3 216330202 216330601 -11193977 + L1ME3A LINE L1 8 748 -5674 963 229 57 37 chr3 216330650 216331032 -11193546 - MLT1C LTR MaLR 0 467 1 450 264 68 27 chr3 216331033 216331181 -11193397 + L1ME3A LINE L1 786 939 -5483 1997 247 83 26 chr3 216331261 216332580 -11191998 + L1ME3A LINE L1 930 2501 -4621 1116 200 17 89 chr3 216332567 216332927 -11191651 + L1MD3 LINE L1 6763 7096 -899 * 414 252 0 37 chr3 216332930 216333037 -11191541 + MLT1F1 LTR MaLR 21 123 -444 1705 228 81 26 chr3 216333042 216333586 -11190992 + L1MD3 LINE L1 7410 7983 -12 1173 261 86 72 chr3 216333575 216334076 -11190502 + L1ME3A LINE L1 3067 3560 -3381 * 2119 107 0 7 chr3 216334076 216334366 -11190212 + AluSc SINE Alu 1 288 -21 1173 261 86 72 chr3 216334366 216334984 -11189594 + L1ME3A LINE L1 3560 4201 -2740 518 224 0 37 chr3 216334986 216335120 -11189458 + L1ME3A LINE L1 6266 6394 -567 299 248 83 37 chr3 216335122 216335231 -11189347 + LTR16A LTR ERVL 52 165 -285 3256 58 88 0 chr3 216335240 216335672 -11188906 + L1PA7 LINE L1 5675 6144 -10 237 33 0 0 chr3 216335707 216335737 -11188841 + (CAAA)n Simple_repeat Simple_repeat 2 31 0 633 333 42 0 chr3 216335752 216335989 -11188589 + LTR16A LTR ERVL 171 417 -33 1399 103 9 9 chr3 216336213 216336427 -11188151 - L1PA14 LINE L1 0 6161 5948 329 98 0 33 chr3 216336427 216336488 -11188090 + L1P LINE L1 5101 5159 -987 684 248 43 24 chr3 216336492 216336746 -11187832 - L1M4 LINE L1 -748 5398 5140 1236 221 103 63 chr3 216336784 216337290 -11187288 + L1ME3A LINE L1 6429 6954 -11 192 259 111 0 chr3 216337546 216337627 -11186951 - MIR3 SINE MIR -7 201 112 * 449 325 26 7 chr3 216337618 216337769 -11186809 + MIR SINE MIR 16 169 -93 273 298 71 50 chr3 216338673 216338814 -11185764 - MIR SINE MIR -73 189 46 233 308 148 22 chr3 216339066 216339248 -11185330 + L2 LINE L2 3107 3311 -2 438 239 18 0 chr3 216340383 216340492 -11184086 - MIR SINE MIR 0 262 152 277 364 74 0 chr3 216341005 216341126 -11183452 - MIR SINE MIR -116 146 17 2339 97 24 0 chr3 216342296 216342637 -11181941 + L1PB1 LINE L1 5793 6141 -10 2224 70 0 7 chr3 216343654 216343977 -11180601 - AluY SINE Alu 0 321 1 37 76 0 0 chr3 216344078 216344157 -11180421 + AT_rich Low_complexity Low_complexity 1 79 0 317 316 204 37 chr3 216345691 216345960 -11178618 - L2 LINE L2 0 3272 2959 244 341 150 33 chr3 216346895 216347256 -11177322 - L2 LINE L2 0 3313 2911 359 353 94 8 chr3 216347511 216347777 -11176801 - L2 LINE L2 -443 2871 2583 291 293 69 58 chr3 216348128 216348302 -11176276 - MIR3 SINE MIR -27 181 6 694 194 38 23 chr3 216349171 216349416 -11175162 + L1MA9 LINE L1 5938 6290 -22 274 323 113 43 chr3 216349490 216349676 -11174902 + MIR3 SINE MIR 10 208 0 414 238 48 0 chr3 216349797 216349902 -11174676 - MIR SINE MIR -2 260 151 233 326 163 0 chr3 216350381 216350473 -11174105 + MIR3 SINE MIR 59 165 -43 1267 5 0 43 chr3 216350621 216350809 -11173769 + (TTCC)n Simple_repeat Simple_repeat 1 180 0 649 338 139 11 chr3 216350821 216351377 -11173201 - L2 LINE L2 -42 3271 2628 333 317 0 0 chr3 216351462 216351544 -11173034 - L3 LINE CR1 -118 1459 1378 190 400 0 0 chr3 216351609 216351669 -11172909 - L3 LINE CR1 -231 1346 1287 627 261 33 5 chr3 216352645 216352829 -11171749 + MER5A DNA MER1_type 1 189 0 250 288 0 15 chr3 216352909 216352975 -11171603 - MIR SINE MIR -124 84 20 637 333 59 41 chr3 216353089 216353548 -11171030 + L1ME4a LINE L1 5625 6091 -30 290 316 173 36 chr3 216354196 216354364 -11170214 - L2 LINE L2 -5 3267 3077 503 232 40 62 chr3 216355401 216355578 -11169000 - MER5B DNA MER1_type -1 177 5 438 277 23 8 chr3 216356146 216356276 -11168302 - MIR SINE MIR -74 188 57 4163 143 24 3 chr3 216356494 216357213 -11167365 + L1MA3 LINE L1 5559 6292 -13 252 329 0 0 chr3 216357870 216357940 -11166638 - MIR SINE MIR -139 123 54 330 45 0 0 chr3 216358721 216358765 -11165813 + (TG)n Simple_repeat Simple_repeat 2 45 0 610 275 11 22 chr3 216359294 216359472 -11165106 - MER5B DNA MER1_type -2 176 1 184 319 0 0 chr3 216359489 216359536 -11165042 - MIR SINE MIR -85 123 77 264 30 0 0 chr3 216360383 216360416 -11164162 + (CA)n Simple_repeat Simple_repeat 2 34 0 2316 103 0 0 chr3 216360820 216361121 -11163457 + AluSq SINE Alu 1 301 -12 338 273 64 36 chr3 216361160 216361270 -11163308 - MIR SINE MIR -61 147 35 26 30 0 0 chr3 216361274 216361307 -11163271 + AT_rich Low_complexity Low_complexity 1 33 0 187 336 66 16 chr3 216361464 216361586 -11162992 - MIR3 SINE MIR -6 202 75 199 325 96 24 chr3 216361749 216361832 -11162746 + MIR3 SINE MIR 86 174 -34 994 159 13 0 chr3 216362098 216362255 -11162323 + AluSq SINE Alu 136 294 -19 2415 141 19 36 chr3 216363740 216364159 -11160419 - MSTA LTR MaLR 0 428 17 184 321 95 36 chr3 216364195 216364279 -11160299 - L2 LINE L2 -51 3221 3133 2287 113 0 0 chr3 216364700 216365002 -11159576 - AluSx SINE Alu -10 302 1 217 192 30 152 chr3 216365032 216365089 -11159489 - MIR3 SINE MIR -2 206 164 1020 170 28 6 chr3 216365089 216365271 -11159307 - MER5A DNA MER1_type -3 186 1 217 192 30 152 chr3 216365271 216365312 -11159266 - MIR3 SINE MIR -44 164 120 201 305 0 17 chr3 216365567 216365626 -11158952 + MIR SINE MIR 88 145 -117 206 160 20 0 chr3 216366147 216366197 -11158381 + (TAGA)n Simple_repeat Simple_repeat 1 51 0 907 302 83 12 chr3 216366283 216366703 -11157875 + L1PB4 LINE L1 1 450 -6399 232 335 81 54 chr3 216367236 216367421 -11157157 + L1PB4 LINE L1 596 785 -6064 5635 258 57 3 chr3 216367562 216369092 -11155486 + L1PB4 LINE L1 1051 2663 -4186 1951 161 56 0 chr3 216369093 216369435 -11155143 - THE1C LTR MaLR 0 375 15 325 104 0 0 chr3 216369458 216369506 -11155072 - L1PA3 LINE L1 -1065 5081 5034 7749 16 2 0 chr3 216369506 216370593 -11153985 + L1PA3 LINE L1 5063 6151 -4 7961 205 25 65 chr3 216370609 216373149 -11151429 + L1PB4 LINE L1 2644 5080 -1768 2100 224 26 6 chr3 216373139 216373674 -11150904 + L1PB4 LINE L1 5487 6032 -816 * 3565 187 17 5 chr3 216373642 216374860 -11149718 + L1PA16 LINE L1 5234 6464 -404 310 234 19 0 chr3 216374866 216374973 -11149605 + (TA)n Simple_repeat Simple_repeat 1 109 0 1452 171 30 43 chr3 216374975 216375280 -11149298 + AluJb SINE Alu 1 301 -11 2179 142 18 38 chr3 216375284 216375678 -11148900 + L1PA16 LINE L1 5781 6166 0 4497 154 27 14 chr3 216375678 216376119 -11148459 + L1PB4 LINE L1 6021 6478 -380 189 0 0 0 chr3 216376119 216376140 -11148438 + (TG)n Simple_repeat Simple_repeat 2 22 0 4497 154 27 14 chr3 216376140 216376523 -11148055 + L1PB4 LINE L1 6478 6855 -3 1412 131 5 0 chr3 216376525 216376724 -11147854 + AluSq SINE Alu 1 200 -113 1789 121 35 0 chr3 216377770 216378027 -11146551 - AluSx SINE Alu -13 299 34 1062 315 63 26 chr3 216378947 216379328 -11145250 + MLT1I LTR MaLR 6 400 -9 188 258 48 0 chr3 216379553 216379615 -11144963 - L2 LINE L2 -218 3054 2990 227 169 39 13 chr3 216380110 216380187 -11144391 + CT-rich Low_complexity Low_complexity 3 81 0 237 306 113 24 chr3 216381330 216381454 -11143124 - MIR3 SINE MIR -5 203 69 980 257 56 23 chr3 216381476 216381818 -11142760 + L1MC4 LINE L1 7549 7901 -141 358 255 73 52 chr3 216382176 216382368 -11142210 - L1MC5 LINE L1 -417 7544 7349 413 324 63 42 chr3 216383147 216383385 -11141193 + HAL1b LINE L1 388 630 -718 703 278 25 72 chr3 216383615 216384018 -11140560 + L1MC4a LINE L1 6414 6797 -1011 214 323 16 0 chr3 216384529 216384591 -11139987 - L2 LINE L2 -5 3267 3205 25 0 0 0 chr3 216385584 216385609 -11138969 + AT_rich Low_complexity Low_complexity 1 25 0 203 194 0 65 chr3 216386100 216386193 -11138385 + CT-rich Low_complexity Low_complexity 4 90 0 5185 189 20 9 chr3 216386259 216387210 -11137368 - L1PA16 LINE L1 -9 6157 5218 555 56 0 0 chr3 216387210 216387281 -11137297 + (TTTC)n Simple_repeat Simple_repeat 2 72 0 1815 160 7 0 chr3 216387285 216387567 -11137011 - AluSx SINE Alu -28 284 1 5185 189 20 9 chr3 216387567 216388715 -11135863 - L1PA16 LINE L1 -950 5216 4032 531 325 43 30 chr3 216389408 216389639 -11134939 - MIR SINE MIR -6 256 23 214 301 36 12 chr3 216389744 216389827 -11134751 + MIR SINE MIR 58 142 -66 2062 151 58 17 chr3 216390110 216390521 -11134057 + MSTA LTR MaLR 1 428 0 228 279 116 12 chr3 216392054 216392140 -11132438 + L2 LINE L2 2262 2356 -958 183 205 0 0 chr3 216393496 216393535 -11131043 + GA-rich Low_complexity Low_complexity 3 41 0 810 162 17 50 chr3 216393795 216393945 -11130633 - MER49 LTR ERV1 -750 173 28 1925 139 49 30 chr3 216393945 216394313 -11130265 - THE1C LTR MaLR 0 375 1 810 162 17 50 chr3 216394313 216394341 -11130237 - MER49 LTR ERV1 -895 28 1 1489 166 31 38 chr3 216394342 216394694 -11129884 - MER49-int LTR ERV1 -3 7095 6374 909 125 39 13 chr3 216394713 216394929 -11129649 - MER49-int LTR ERV1 -598 6160 3908 402 273 98 21 chr3 216395373 216395516 -11129062 + MIR SINE MIR 53 206 -56 557 247 33 71 chr3 216395753 216395935 -11128643 - MIR SINE MIR -43 219 45 704 67 2 11 chr3 216396033 216396142 -11128436 - L1MC/D LINE L1 -604 5638 5530 26 0 0 0 chr3 216396145 216396171 -11128407 + AT_rich Low_complexity Low_complexity 1 26 0 386 356 158 22 chr3 216396506 216397133 -11127445 - L3 LINE CR1 -143 1434 723 815 313 59 16 chr3 216397564 216397871 -11126707 + L3 LINE CR1 1245 1564 -13 292 245 82 41 chr3 216398307 216398405 -11126173 - MLT1I LTR MaLR -154 255 154 315 225 88 25 chr3 216398665 216398745 -11125833 - MIR3 SINE MIR -15 193 109 216 163 47 0 chr3 216399480 216399523 -11125055 + (TTCA)n Simple_repeat Simple_repeat 1 45 0 1151 246 83 23 chr3 216399874 216400493 -11124085 + L1M3e LINE L1 2 1941 -5089 * 11613 196 41 16 chr3 216400475 216404707 -11119871 + L1MA9 LINE L1 2208 6548 0 21 95 0 0 chr3 216405198 216405261 -11119317 + AT_rich Low_complexity Low_complexity 1 63 0 3293 135 48 32 chr3 216405753 216406546 -11118032 + pTR5 LTR ERV1 741 2021 -417 289 247 0 0 chr3 216406550 216406627 -11117951 + LTR30 LTR ERV1 544 620 -102 2257 113 3 0 chr3 216406627 216406973 -11117605 + pTR5 LTR ERV1 45 391 -2047 1765 169 3 17 chr3 216407455 216407756 -11116822 + AluJb SINE Alu 1 297 -15 240 281 97 9 chr3 216407796 216408024 -11116554 + L1M3e LINE L1 2131 2378 -4649 428 225 8 0 chr3 216408054 216408183 -11116395 + G-rich Low_complexity Low_complexity 3 132 0 352 245 65 65 chr3 216408190 216408329 -11116249 + L1M4c LINE L1 1273 1411 -4973 383 356 0 15 chr3 216410029 216410164 -11114414 + MIR SINE MIR 20 152 -56 713 325 20 12 chr3 216410180 216410429 -11114149 - MIR SINE MIR -10 252 2 421 291 0 0 chr3 216411740 216411857 -11112721 + MER63A DNA MER1_type 94 210 0 287 268 20 50 chr3 216411947 216412056 -11112522 + MIR SINE MIR 50 155 -62 355 315 94 7 chr3 216413123 216413272 -11111306 + MIR3 SINE MIR 16 177 -31 231 36 0 0 chr3 216413558 216413586 -11110992 + (A)n Simple_repeat Simple_repeat 1 28 0 340 287 100 100 chr3 216413996 216414247 -11110331 + MIR SINE MIR 12 262 0 187 217 0 22 chr3 216415495 216415541 -11109037 + L2 LINE L2 3268 3312 -1 473 336 50 29 chr3 216416003 216416384 -11108194 + L1MEd LINE L1 442 830 -5289 294 256 94 67 chr3 216416387 216416413 -11108165 + MLT1E LTR MaLR 3 27 -627 1618 131 66 56 chr3 216416413 216416718 -11107860 - AluSx SINE Alu -4 308 1 294 256 94 67 chr3 216416718 216416949 -11107629 + MLT1E LTR MaLR 27 373 -281 1094 193 121 46 chr3 216416990 216417337 -11107241 + L1MD3 LINE L1 7623 7995 0 27 0 0 0 chr3 216417414 216417441 -11107137 + AT_rich Low_complexity Low_complexity 1 27 0 21 89 0 0 chr3 216417521 216417577 -11107001 + AT_rich Low_complexity Low_complexity 1 56 0 6097 88 0 0 chr3 216419297 216420221 -11104357 - L1PA14 LINE L1 -1 6160 5218 2874 100 9 5 chr3 216420221 216420660 -11103918 - THE1B-int LTR MaLR -1139 441 1 1826 149 72 29 chr3 216420660 216421009 -11103569 - THE1B LTR MaLR 0 364 1 4924 182 16 0 chr3 216421009 216422043 -11102535 - L1PA14 LINE L1 -951 5195 4145 2371 128 8 22 chr3 216422103 216422463 -11102115 + THE1A LTR MaLR 1 355 0 10914 113 11 1 chr3 216422464 216424025 -11100553 + THE1A-int LTR MaLR 2 1578 -2 2563 107 0 22 chr3 216424027 216424390 -11100188 + THE1A LTR MaLR 1 355 0 586 316 133 34 chr3 216424871 216425402 -11099176 + L2 LINE L2 2579 3170 -143 271 339 54 17 chr3 216425487 216425782 -11098796 - HERV16 LTR ERVL -1669 3985 3680 2202 246 52 5 chr3 216425830 216426411 -11098167 + MER90 LTR ERV1 1 608 -6 2094 332 52 24 chr3 216426875 216427915 -11096663 - HERV16 LTR ERVL -1990 3006 1938 256 232 18 0 chr3 216427941 216427997 -11096581 - MER45A DNA AcHobo -7 171 115 396 248 12 18 chr3 216428119 216428435 -11096143 + G-rich Low_complexity Low_complexity 1 314 0 1903 333 29 31 chr3 216428465 216429569 -11095009 - HERV16 LTR ERVL -3253 1743 579 1213 105 0 0 chr3 216430266 216430418 -11094160 + AluSc SINE Alu 1 152 -157 2142 84 52 0 chr3 216430419 216430705 -11093873 + AluSc SINE Alu 2 302 -7 594 310 40 22 chr3 216430711 216430985 -11093593 - LTR16B LTR ERVL -139 325 47 312 289 109 8 chr3 216431290 216431418 -11093160 - L1ME4a LINE L1 -13 6108 5968 272 228 22 28 chr3 216431608 216431788 -11092790 + (TA)n Simple_repeat Simple_repeat 1 179 0 235 283 114 36 chr3 216432565 216432731 -11091847 + MIR SINE MIR 49 227 -35 210 381 29 38 chr3 216432766 216432871 -11091707 + L2 LINE L2 3169 3272 0 237 359 0 0 chr3 216432931 216433009 -11091569 + MIR SINE MIR 83 160 -102 193 311 33 57 chr3 216433721 216433843 -11090735 + L2 LINE L2 3154 3272 0 24 0 0 0 chr3 216434100 216434124 -11090454 + AT_rich Low_complexity Low_complexity 1 24 0 740 206 33 11 chr3 216434321 216434501 -11090077 - L1MB2 LINE L1 -6 6165 5982 611 210 22 7 chr3 216434726 216434864 -11089714 - MER69 DNA AcHobo -425 801 662 1586 283 78 2 chr3 216434946 216435405 -11089173 - MER69 DNA AcHobo -2026 500 7 1597 195 146 7 chr3 216435454 216435885 -11088693 + L1MC4 LINE L1 7416 7906 -136 238 270 13 94 chr3 216437002 216437097 -11087481 + LTR67 LTR ERVL 412 490 -67 210 37 0 0 chr3 216437097 216437124 -11087454 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 238 270 13 94 chr3 216437124 216437187 -11087391 + LTR67 LTR ERVL 490 557 0 287 314 36 44 chr3 216437188 216437325 -11087253 - MIR3 SINE MIR -60 148 13 29 49 0 16 chr3 216437497 216437521 -11087057 + AT_rich Low_complexity Low_complexity 1 24 -36 1662 171 3 20 chr3 216437521 216437826 -11086752 + AluJo SINE Alu 5 304 -8 29 49 0 16 chr3 216437826 216437862 -11086716 + AT_rich Low_complexity Low_complexity 24 60 0 180 245 41 0 chr3 216437969 216438018 -11086560 - MIR3 SINE MIR -8 200 150 * 658 183 170 0 chr3 216438015 216438168 -11086410 + MER5A DNA MER1_type 11 189 0 180 0 0 0 chr3 216439357 216439377 -11085201 + (CAAAA)n Simple_repeat Simple_repeat 2 21 0 215 309 0 25 chr3 216441004 216441085 -11083493 + GA-rich Low_complexity Low_complexity 3 81 0 2800 68 0 3 chr3 216441645 216442010 -11082568 - L1PA13 LINE L1 -2 6161 5798 322 302 204 31 chr3 216444010 216444235 -11080343 + LTR33 LTR ERVL 251 514 -7 22 56 0 0 chr3 216444293 216444329 -11080249 + AT_rich Low_complexity Low_complexity 1 36 0 281 315 41 48 chr3 216444664 216444810 -11079768 + MIR3 SINE MIR 2 146 -62 4854 153 33 9 chr3 216444893 216445738 -11078840 - MER6 DNA MER2_type 0 865 1 546 253 6 66 chr3 216445871 216446037 -11078541 - MIR3 SINE MIR -34 174 19 1591 233 93 32 chr3 216446138 216446611 -11077967 + MLT1D LTR MaLR 1 502 -3 411 388 45 67 chr3 216447082 216447500 -11077078 + L2 LINE L2 2864 3272 0 231 308 26 0 chr3 216447495 216447573 -11077005 - L2 LINE L2 -548 2766 2687 * 239 277 108 0 chr3 216447568 216447651 -11076927 + MIR3 SINE MIR 112 203 -5 220 288 91 0 chr3 216448173 216448239 -11076339 - L2 LINE L2 0 3272 3201 230 336 86 17 chr3 216448244 216448360 -11076218 - MIR SINE MIR -66 142 19 841 250 77 5 chr3 216448369 216448577 -11076001 + MER58A DNA MER1_type 1 223 -1 737 315 25 11 chr3 216448907 216449193 -11075385 + LTR16B LTR ERVL 24 313 -151 477 81 0 35 chr3 216449193 216449280 -11075298 + (TTCC)n Simple_repeat Simple_repeat 2 85 0 808 137 0 0 chr3 216449399 216449516 -11075062 - LTR49-int LTR ERV1 -4227 3893 3777 425 222 0 28 chr3 216449510 216449618 -11074960 - LTR49-int LTR ERV1 -2192 4139 4035 * 3409 137 14 19 chr3 216449817 216450410 -11074168 - LTR49-int LTR ERV1 -4337 3783 3194 1490 126 27 15 chr3 216450409 216450672 -11073906 - LTR49-int LTR ERV1 -4858 3262 2997 * 6553 138 15 31 chr3 216450685 216451878 -11072700 - LTR49-int LTR ERV1 -6427 1693 520 265 233 0 0 chr3 216451905 216451948 -11072630 - 5S rRNA rRNA -71 50 8 1273 234 45 36 chr3 216452028 216452447 -11072131 - LTR49-int LTR ERV1 -7670 450 28 196 361 39 23 chr3 216452638 216452768 -11071810 - MER5A DNA MER1_type -51 138 7 206 228 0 70 chr3 216452881 216452938 -11071640 + MER5A DNA MER1_type 136 188 -1 354 255 178 6 chr3 216455875 216456032 -11068546 - MIR SINE MIR -56 206 23 393 236 104 0 chr3 216456369 216456475 -11068103 - MIR SINE MIR -3 259 143 617 267 76 27 chr3 216456492 216456717 -11067861 + MIR SINE MIR 6 241 -21 284 262 60 0 chr3 216456724 216456808 -11067770 - MIR SINE MIR -99 163 75 2115 114 4 0 chr3 216457026 216457348 -11067230 - AluSq SINE Alu 0 323 1 2346 120 10 10 chr3 216458580 216458963 -11065615 - L1PB2 LINE L1 0 6151 5769 204 222 0 0 chr3 216459503 216459557 -11065021 + T-rich Low_complexity Low_complexity 1 54 0 3196 115 18 4 chr3 216459558 216460054 -11064524 - L1PA6 LINE L1 -5 6149 5647 259 172 35 17 chr3 216460056 216460114 -11064464 + MER5A DNA MER1_type 128 186 -3 571 276 33 11 chr3 216460125 216460306 -11064272 + MER5A DNA MER1_type 1 185 -4 593 251 12 85 chr3 216462274 216462533 -11062045 + L2 LINE L2 3074 3313 0 269 339 9 26 chr3 216462661 216462776 -11061802 - MIR SINE MIR -130 132 20 414 248 26 34 chr3 216462894 216463011 -11061567 - MIR SINE MIR -106 156 41 215 310 35 0 chr3 216463056 216463114 -11061464 - L2 LINE L2 -5 3267 3208 2453 137 68 5 chr3 216463260 216463685 -11060893 + L1PA13 LINE L1 5710 6161 -2 180 304 333 17 chr3 216463845 216464085 -11060493 - L2 LINE L2 -424 2890 2575 2275 116 21 32 chr3 216464420 216464799 -11059779 + THE1C LTR MaLR 1 375 0 9268 118 43 50 chr3 216464800 216465313 -11059265 + THE1C-int LTR MaLR 2 517 -1063 2115 143 0 6 chr3 216465313 216465627 -11058951 + AluSx SINE Alu 1 312 0 9268 118 43 50 chr3 216465627 216466703 -11057875 + THE1C-int LTR MaLR 517 1580 0 2414 117 16 16 chr3 216466703 216467078 -11057500 + THE1C LTR MaLR 1 375 0 792 288 107 48 chr3 216469228 216469396 -11055182 + L1MCa LINE L1 5 162 -5883 2111 127 10 0 chr3 216469396 216469696 -11054882 + AluSx SINE Alu 5 307 -5 792 288 107 48 chr3 216469696 216469960 -11054618 + L1MCa LINE L1 162 369 -5676 1102 252 127 20 chr3 216470126 216470954 -11053624 + L1MCa LINE L1 2043 2971 -3593 * 5396 210 29 64 chr3 216470950 216472521 -11052057 + L1MC3 LINE L1 5721 7235 -550 380 148 0 109 chr3 216472633 216472835 -11051743 + (G)n Simple_repeat Simple_repeat 1 180 0 1659 183 18 28 chr3 216472893 216473281 -11051297 - LOR1a LTR ERV1 -102 395 12 487 225 46 40 chr3 216473660 216473811 -11050767 - L1MEc LINE L1 -6158 238 87 1820 194 43 0 chr3 216473855 216474205 -11050373 + MLT1A1 LTR MaLR 1 365 0 372 365 28 18 chr3 216474239 216474521 -11050057 + L1M4 LINE L1 4777 5061 -1085 3583 261 45 12 chr3 216474585 216475706 -11048872 + L1ME1 LINE L1 35 1191 -5205 3284 255 70 30 chr3 216475720 216477119 -11047459 + L1ME1 LINE L1 1352 2825 -3390 803 238 69 63 chr3 216477119 216477481 -11047097 - MLT1A1 LTR MaLR 0 365 2 3284 255 70 30 chr3 216477481 216478257 -11046321 + L1ME1 LINE L1 2825 3569 -2646 1046 259 60 13 chr3 216478296 216478613 -11045965 + L1ME1 LINE L1 3846 4177 -2038 340 229 0 0 chr3 216478613 216478683 -11045895 - MER52A LTR ERV1 0 1755 1686 * 3231 191 45 146 chr3 216478659 216479961 -11044617 - MER52A LTR ERV1 -125 1195 46 596 274 56 28 chr3 216480204 216480261 -11044317 + L1ME1 LINE L1 4162 4216 -1999 183 42 0 0 chr3 216480261 216480285 -11044293 + (CAAT)n Simple_repeat Simple_repeat 1 24 0 596 274 56 28 chr3 216480285 216480749 -11043829 + L1ME1 LINE L1 4216 4860 -1355 1762 154 40 17 chr3 216480810 216481108 -11043470 + AluSx SINE Alu 1 305 -7 1429 266 86 32 chr3 216481108 216481699 -11042879 - MER76 LTR ERV -65 623 1 963 214 17 8 chr3 216481699 216481933 -11042645 + L1ME1 LINE L1 4865 5100 -1115 783 253 56 16 chr3 216481986 216482235 -11042343 + L1ME1 LINE L1 5083 5341 -874 580 175 10 0 chr3 216482236 216482333 -11042245 - Tigger7 DNA MER2_type -1 2486 2389 * 1172 182 86 0 chr3 216482331 216482551 -11042027 - Tigger7 DNA MER2_type -2220 267 29 2666 243 24 46 chr3 216482595 216483419 -11041159 + L1ME1 LINE L1 5384 6189 -46 388 259 53 8 chr3 216483320 216483451 -11041127 + L1MA10 LINE L1 6249 6385 -18 * 7581 35 6 0 chr3 216483437 216484915 -11039663 - L1PA5 LINE L1 -11 6143 4661 5631 38 0 0 chr3 216484916 216485598 -11038980 + L1PA5 LINE L1 3985 4666 -1480 367 149 0 0 chr3 216485598 216485665 -11038913 + L1MA10 LINE L1 6264 6330 -4 2106 243 121 1 chr3 216486092 216486871 -11037707 - MER63C DNA MER1_type -2 928 2 667 260 132 61 chr3 216487365 216488108 -11036470 + L1ME4a LINE L1 5320 6115 -6 2992 142 46 35 chr3 216488963 216489554 -11035024 + MER49 LTR ERV1 1 597 -326 1287 170 40 113 chr3 216489658 216490111 -11034467 + L1MC3 LINE L1 7358 7777 -8 10008 193 24 20 chr3 216490129 216493549 -11031029 - L1PA16 LINE L1 -1 6165 2736 21 0 0 0 chr3 216493787 216493808 -11030770 + AT_rich Low_complexity Low_complexity 1 21 0 2033 165 0 0 chr3 216494587 216494896 -11029682 - AluSx SINE Alu -3 309 1 194 352 37 28 chr3 216495081 216495189 -11029389 - MIR SINE MIR -65 143 35 1539 252 28 9 chr3 216495958 216496386 -11028192 - MER63B DNA MER1_type 0 436 1 668 289 92 0 chr3 216496596 216496814 -11027764 + MLT1L LTR MaLR 378 615 0 287 355 15 41 chr3 216498028 216498225 -11026353 + L1MEc LINE L1 107 298 -6098 2007 125 0 10 chr3 216498237 216498526 -11026052 - AluSg SINE Alu -9 301 16 704 283 11 21 chr3 216498867 216499058 -11025520 - MER58A DNA MER1_type -32 192 4 439 285 58 71 chr3 216499371 216499797 -11024781 + L1MEc LINE L1 824 1233 -4982 723 211 0 0 chr3 216499797 216499925 -11024653 + FLAM_C SINE Alu 1 128 -5 439 285 58 71 chr3 216499925 216500230 -11024348 + L1MEc LINE L1 1233 1540 -4675 1356 251 110 18 chr3 216500303 216501700 -11022878 + L1MEc LINE L1 1580 3048 -3167 * 5815 168 19 14 chr3 216501693 216503266 -11021312 + L1MA5 LINE L1 4711 6300 0 395 229 42 17 chr3 216503275 216503387 -11021191 + L1MEc LINE L1 3040 3155 -3055 1616 207 0 3 chr3 216503387 216503692 -11020886 + AluJb SINE Alu 1 304 -8 615 103 0 0 chr3 216503697 216503794 -11020784 + (GGAA)n Simple_repeat Simple_repeat 2 98 0 414 205 37 68 chr3 216503795 216503956 -11020622 + L1MEc LINE L1 3176 3331 -2884 1476 136 14 0 chr3 216503982 216504203 -11020375 - AluSq SINE Alu -89 224 1 727 253 164 32 chr3 216504225 216504751 -11019827 + L1MEc LINE L1 3964 4558 -1657 629 297 90 45 chr3 216505415 216505792 -11018786 - LTR16C LTR ERVL 0 491 98 216 158 0 0 chr3 216506175 216506213 -11018365 + C-rich Low_complexity Low_complexity 1 38 0 216 277 0 48 chr3 216506220 216506303 -11018275 + CT-rich Low_complexity Low_complexity 4 82 0 434 155 0 12 chr3 216506430 216506514 -11018064 + CT-rich Low_complexity Low_complexity 3 85 0 1383 132 128 12 chr3 216506525 216506776 -11017802 + MER49 LTR ERV1 635 914 -9 224 356 50 0 chr3 216506789 216506890 -11017688 - L2 LINE L2 -16 3256 3151 371 179 253 0 chr3 216507653 216507748 -11016830 + MER5A DNA MER1_type 41 159 -30 298 219 175 25 chr3 216507655 216507786 -11016792 - MER5A DNA MER1_type -31 158 4 * 301 253 0 0 chr3 216507803 216507871 -11016707 - MER5B DNA MER1_type -6 172 113 307 252 61 68 chr3 216508125 216508272 -11016306 - MER5A DNA MER1_type 0 189 44 * 326 328 24 16 chr3 216508178 216508303 -11016275 + MER5A DNA MER1_type 63 188 -1 338 266 65 29 chr3 216508393 216508532 -11016046 - MER20B DNA MER1_type -608 175 32 309 293 67 79 chr3 216508712 216508876 -11015702 + MIR SINE MIR 20 181 -81 499 330 100 11 chr3 216509236 216509497 -11015081 + LTR33 LTR ERVL 1 284 -237 228 306 90 56 chr3 216511995 216512139 -11012439 + MIR SINE MIR 34 182 -80 1298 243 32 27 chr3 216512630 216513153 -11011425 + Charlie2 DNA MER1_type 2337 2862 0 864 216 45 6 chr3 216513161 216513337 -11011241 + MER5A DNA MER1_type 1 183 -6 879 302 10 47 chr3 216514322 216514785 -11009793 + L2 LINE L2 2710 3148 -165 2118 125 7 0 chr3 216514785 216515080 -11009498 - AluSg SINE Alu -13 297 1 879 302 10 47 chr3 216515080 216515113 -11009465 + L2 LINE L2 3148 3181 -132 333 264 57 93 chr3 216515124 216515317 -11009261 + LTR33A LTR ERVL 1 186 -337 267 393 8 0 chr3 216516067 216516189 -11008389 + L2 LINE L2 3175 3297 -16 1438 148 13 0 chr3 216516450 216516679 -11007899 - L1PB4 LINE L1 -132 6984 6753 201 39 0 0 chr3 216516679 216516705 -11007873 + (TG)n Simple_repeat Simple_repeat 2 27 0 222 254 16 16 chr3 216516705 216516768 -11007810 + (CATATA)n Simple_repeat Simple_repeat 4 66 0 290 176 12 0 chr3 216516793 216516878 -11007700 + (TA)n Simple_repeat Simple_repeat 1 86 0 228 238 100 0 chr3 216516879 216516959 -11007619 - L1MC4 LINE L1 -1341 6701 6614 * 4035 189 17 23 chr3 216516952 216518436 -11006142 - L1PB4 LINE L1 -367 6749 5275 301 220 0 0 chr3 216518546 216518605 -11005973 - L1PB4 LINE L1 -6905 125 67 588 215 118 0 chr3 216518610 216518754 -11005824 - L1PB4 LINE L1 -6869 161 1 310 203 0 0 chr3 216519302 216519361 -11005217 + L1MDb LINE L1 759 817 -5592 1328 128 0 0 chr3 216519361 216519540 -11005038 + AluSx SINE Alu 1 179 -133 447 332 76 33 chr3 216519620 216519966 -11004612 + L1ME LINE L1 5318 5685 -436 369 0 0 0 chr3 216519966 216520007 -11004571 + (TA)n Simple_repeat Simple_repeat 1 41 0 447 332 76 33 chr3 216520007 216520055 -11004523 + L1ME LINE L1 5685 5729 -392 482 345 30 25 chr3 216520339 216520574 -11004004 - MIR SINE MIR -16 246 11 625 246 72 12 chr3 216520620 216520787 -11003791 - MIR SINE MIR -28 234 58 253 305 69 61 chr3 216521585 216521716 -11002862 - L2 LINE L2 0 3313 3182 2198 128 3 3 chr3 216522031 216522343 -11002235 - AluSp SINE Alu -1 312 1 428 302 53 14 chr3 216523329 216523490 -11001088 + MIR3 SINE MIR 6 169 -39 225 0 0 0 chr3 216524001 216524026 -11000552 + (TAAA)n Simple_repeat Simple_repeat 3 27 0 2281 104 0 0 chr3 216524144 216524441 -11000137 - AluSg SINE Alu -13 297 1 223 286 16 0 chr3 216524733 216524796 -10999782 - MIR3 SINE MIR -52 156 93 304 363 19 25 chr3 216524975 216525135 -10999443 + L3 LINE CR1 1402 1560 -17 217 318 82 36 chr3 216525591 216525701 -10998877 - MIR3 SINE MIR -6 202 88 341 328 72 39 chr3 216526279 216526459 -10998119 - MIR3 SINE MIR 0 208 23 223 352 35 21 chr3 216526475 216526517 -10998061 - MIR3 SINE MIR -12 196 156 2348 109 3 0 chr3 216526517 216526828 -10997750 - AluSx SINE Alu 0 312 1 223 352 35 21 chr3 216526828 216526927 -10997651 - MIR3 SINE MIR -52 156 53 273 320 10 29 chr3 216527468 216527571 -10997007 + MIR SINE MIR 30 130 -78 242 331 7 68 chr3 216527746 216527894 -10996684 + MIR3 SINE MIR 60 198 -10 2322 106 0 6 chr3 216528467 216528779 -10995799 + AluSx SINE Alu 1 310 -2 1059 213 9 18 chr3 216528821 216529042 -10995536 - MER20 DNA MER1_type 0 219 1 244 233 23 15 chr3 216529701 216529834 -10994744 + CT-rich Low_complexity Low_complexity 3 136 0 26 30 0 0 chr3 216530002 216530035 -10994543 + AT_rich Low_complexity Low_complexity 1 33 0 375 277 96 59 chr3 216530897 216531117 -10993461 + MIR SINE MIR 2 229 -33 11332 209 37 28 chr3 216531363 216531988 -10992590 - L1MC3 LINE L1 -9 7776 7158 1882 99 19 4 chr3 216531988 216532251 -10992327 - AluSx SINE Alu 0 312 46 11332 209 37 28 chr3 216532251 216535522 -10989056 - L1MC3 LINE L1 -627 7158 3856 384 272 161 22 chr3 216535701 216535881 -10988697 + MIR SINE MIR 32 236 -26 322 360 27 0 chr3 216536180 216536291 -10988287 - L2 LINE L2 -22 3250 3137 436 328 79 5 chr3 216536341 216536530 -10988048 - MIR SINE MIR -43 219 17 277 289 28 42 chr3 216537536 216537678 -10986900 - MIR SINE MIR -6 256 117 957 116 0 7 chr3 216538282 216538420 -10986158 + THE1B LTR MaLR 226 362 -2 350 121 15 0 chr3 216538707 216538773 -10985805 + (TA)n Simple_repeat Simple_repeat 1 67 0 222 359 54 0 chr3 216538924 216539016 -10985562 + MIR SINE MIR 58 154 -108 1039 68 5 36 chr3 216539383 216539611 -10984967 + (TTCC)n Simple_repeat Simple_repeat 2 398 0 1429 336 45 39 chr3 216539664 216540462 -10984116 + ERVL LTR ERVL 2888 3730 -1836 308 280 107 53 chr3 216540861 216541011 -10983567 + HAL1 LINE L1 2348 2505 -2 2267 84 10 3 chr3 216541142 216541441 -10983137 - AluY SINE Alu -10 301 1 268 238 38 38 chr3 216541588 216541668 -10982910 + MIR SINE MIR 60 139 -69 261 125 0 71 chr3 216541833 216541889 -10982689 + MER4-int LTR ERV1 1111 1162 -5436 262 264 0 0 chr3 216542236 216542289 -10982289 + polypyrimidine Low_complexity Low_complexity 2 54 0 253 150 0 0 chr3 216542832 216542872 -10981706 - MIR SINE MIR -70 192 153 350 177 0 0 chr3 216542885 216542947 -10981631 + L1MA8 LINE L1 5909 5970 -321 354 83 50 0 chr3 216543316 216543376 -10981202 + L1PA6 LINE L1 5790 5852 -302 2332 146 35 2 chr3 216543489 216543887 -10980691 - L1PA14 LINE L1 -152 6009 5599 21 0 0 0 chr3 216594899 216594920 -10929658 + AT_rich Low_complexity Low_complexity 1 21 0 2051 48 0 0 chr3 216596073 216596324 -10928254 - L1PA4 LINE L1 -3 6152 5902 2263 106 0 0 chr3 216596524 216596825 -10927753 - AluSg1 SINE Alu -8 301 1 388 299 99 20 chr3 216598765 216598966 -10925612 + MIR SINE MIR 20 236 -26 217 331 128 14 chr3 216599577 216599725 -10924853 + L3 LINE CR1 1287 1451 -126 518 202 65 8 chr3 216600433 216600557 -10924021 + MIR SINE MIR 67 197 -65 30 0 0 0 chr3 216600962 216600992 -10923586 + AT_rich Low_complexity Low_complexity 1 30 0 2159 91 0 52 chr3 216600992 216601300 -10923278 - AluSx SINE Alu -20 292 1 22 0 0 0 chr3 216602558 216602580 -10921998 + AT_rich Low_complexity Low_complexity 1 22 0 354 285 134 28 chr3 216603703 216603882 -10920696 + MIR SINE MIR 65 262 0 554 339 64 29 chr3 216604294 216604726 -10919852 - L2 LINE L2 -228 3044 2593 2220 121 0 0 chr3 216604727 216605032 -10919546 + AluSx SINE Alu 1 305 -7 299 346 0 30 chr3 216605457 216605558 -10919020 + MIR3 SINE MIR 70 167 -41 322 148 30 215 chr3 216606330 216606465 -10918113 + MLT-int LTR MaLR 42 151 -1500 296 75 0 0 chr3 216606497 216606537 -10918041 + MADE1 DNA Mariner 4 43 -37 189 0 0 0 chr3 216607067 216607088 -10917490 + (CAAAA)n Simple_repeat Simple_repeat 2 22 0 251 325 102 19 chr3 216608229 216608386 -10916192 - MIR SINE MIR -71 191 22 2322 100 0 7 chr3 216608587 216608897 -10915681 - AluSg SINE Alu -1 309 2 21 0 0 0 chr3 216612014 216612035 -10912543 + AT_rich Low_complexity Low_complexity 1 21 0 2003 109 33 4 chr3 216612410 216612738 -10911840 + AluSg SINE Alu 1 336 0 243 203 0 72 chr3 216613683 216613752 -10910826 - MIR SINE MIR -58 204 141 442 317 33 22 chr3 216614372 216614555 -10910023 + MIR SINE MIR 4 188 -74 203 303 46 99 chr3 216615756 216615908 -10908670 - MIR3 SINE MIR -7 201 58 294 349 8 23 chr3 216616705 216616834 -10907744 - MIR SINE MIR -65 143 17 400 298 92 86 chr3 216617569 216618230 -10906348 + L1ME4a LINE L1 5455 6119 -2 21 71 0 0 chr3 216618240 216618282 -10906296 + AT_rich Low_complexity Low_complexity 1 42 0 306 310 183 18 chr3 216618385 216618659 -10905919 + L1ME LINE L1 5325 5643 -478 403 294 39 20 chr3 216619177 216619330 -10905248 + MIR SINE MIR 107 262 0 203 320 131 34 chr3 216620378 216620584 -10903994 - L2 LINE L2 -447 2867 2642 388 230 14 0 chr3 216620657 216620731 -10903847 - MER2 DNA MER2_type -2 343 269 396 130 0 0 chr3 216621166 216621235 -10903343 + (CA)n Simple_repeat Simple_repeat 2 70 0 243 272 101 57 chr3 216621484 216621642 -10902936 + MIR SINE MIR 77 241 -21 439 197 226 22 chr3 216622046 216622183 -10902395 - MIR3 SINE MIR -37 171 7 371 226 74 54 chr3 216622510 216622683 -10901895 - MER5A DNA MER1_type 0 189 3 180 152 0 0 chr3 216624178 216624211 -10900367 + T-rich Low_complexity Low_complexity 1 33 0 189 0 0 0 chr3 216627135 216627156 -10897422 + (CAAAA)n Simple_repeat Simple_repeat 1 21 0 202 114 29 0 chr3 216627161 216627196 -10897382 + (TG)n Simple_repeat Simple_repeat 1 36 0 519 194 10 0 chr3 216629722 216629820 -10894758 - MER94 DNA DNA -34 100 2 434 315 62 110 chr3 216634581 216634873 -10889705 - L2 LINE L2 0 3272 2995 326 289 9 35 chr3 216634951 216635065 -10889513 - L2 LINE L2 -495 2819 2709 198 118 0 0 chr3 216635173 216635207 -10889371 + (A)n Simple_repeat Simple_repeat 1 34 0 610 254 94 14 chr3 216635300 216635513 -10889065 + MIR SINE MIR 18 247 -15 189 0 0 0 chr3 216635601 216635622 -10888956 + (TTTTTA)n Simple_repeat Simple_repeat 2 22 0 23 0 0 0 chr3 216635783 216635806 -10888772 + AT_rich Low_complexity Low_complexity 1 23 0 27 0 0 0 chr3 216636051 216636078 -10888500 + AT_rich Low_complexity Low_complexity 1 27 0 30 0 0 0 chr3 216636201 216636231 -10888347 + AT_rich Low_complexity Low_complexity 1 30 0 395 234 20 104 chr3 216637182 216637402 -10887176 - MIR3 SINE MIR -4 204 4 2227 109 3 0 chr3 216637714 216638008 -10886570 + AluSp SINE Alu 1 295 -18 680 252 25 13 chr3 216639031 216639190 -10885388 + MER45A DNA AcHobo 3 163 -15 243 0 0 0 chr3 216640738 216640765 -10883813 + (T)n Simple_repeat Simple_repeat 1 27 0 253 336 9 69 chr3 216642454 216642570 -10882008 - L3 LINE CR1 0 1577 1469 22 70 0 0 chr3 216643642 216643685 -10880893 + AT_rich Low_complexity Low_complexity 1 43 0 27 106 0 0 chr3 216643730 216643834 -10880744 + AT_rich Low_complexity Low_complexity 1 104 0 2034 137 3 13 chr3 216645273 216645573 -10879005 + AluSg SINE Alu 1 297 -13 326 283 105 47 chr3 216645775 216645980 -10878598 + MIR3 SINE MIR 9 216 -46 22 0 0 0 chr3 216646122 216646144 -10878434 + AT_rich Low_complexity Low_complexity 1 22 0 243 236 230 46 chr3 216646349 216646523 -10878055 - MIR SINE MIR -56 206 1 295 314 57 86 chr3 216647212 216647387 -10877191 + MIR SINE MIR 17 186 -76 220 319 0 0 chr3 216648434 216648481 -10876097 + L2 LINE L2 3208 3254 -18 22 70 0 0 chr3 216649633 216649676 -10874902 + AT_rich Low_complexity Low_complexity 1 43 0 291 281 21 10 chr3 216649717 216649813 -10874765 + CT-rich Low_complexity Low_complexity 4 100 0 370 292 68 25 chr3 216650030 216650191 -10874387 - MER102a DNA MER1_type -1 329 162 28 0 0 0 chr3 216650191 216650219 -10874359 + AT_rich Low_complexity Low_complexity 1 28 0 334 254 31 23 chr3 216650241 216650371 -10874207 - MER102a DNA MER1_type -169 161 31 22 35 0 0 chr3 216650643 216650672 -10873906 + AT_rich Low_complexity Low_complexity 1 29 0 1336 163 128 27 chr3 216651266 216651549 -10873029 - AluJb SINE Alu 0 309 1 247 286 29 0 chr3 216651765 216651835 -10872743 + CT-rich Low_complexity Low_complexity 3 74 0 282 56 0 0 chr3 216652665 216652701 -10871877 + (A)n Simple_repeat Simple_repeat 1 36 0 414 313 118 0 chr3 216653500 216653695 -10870883 + MIR SINE MIR 9 226 -36 309 118 0 0 chr3 216653961 216654012 -10870566 + (T)n Simple_repeat Simple_repeat 1 51 0 2361 87 3 0 chr3 216654203 216654503 -10870075 + AluSg1 SINE Alu 1 301 -8 223 358 108 11 chr3 216655003 216655179 -10869399 + MIR SINE MIR 19 211 -51 187 350 248 8 chr3 216656173 216656290 -10868288 + MIR3 SINE MIR 16 160 -48 253 282 13 13 chr3 216657586 216657664 -10866914 - MIR SINE MIR -81 127 50 1315 122 0 0 chr3 216657991 216658172 -10866406 - AluSg/x SINE Alu -2 308 128 1689 134 17 0 chr3 216658172 216658411 -10866167 - AluSx SINE Alu -69 243 1 882 199 39 19 chr3 216659136 216659342 -10865236 + MER6B DNA MER2_type 1 210 0 306 0 0 0 chr3 216660441 216660475 -10864103 + (TG)n Simple_repeat Simple_repeat 2 35 0 1363 128 31 0 chr3 216660509 216660705 -10863873 - AluSg/x SINE Alu -3 309 108 2071 118 0 0 chr3 216660824 216661103 -10863475 + AluSx SINE Alu 17 295 -17 231 36 0 0 chr3 216661105 216661133 -10863445 + (CAT)n Simple_repeat Simple_repeat 2 29 0 347 274 10 29 chr3 216661826 216661928 -10862650 + MIR3 SINE MIR 92 191 -17 236 146 0 21 chr3 216661928 216661976 -10862602 + (TCC)n Simple_repeat Simple_repeat 2 48 0 1094 206 82 19 chr3 216661994 216662251 -10862327 - AluJo SINE Alu -39 273 1 3423 177 119 24 chr3 216662523 216663310 -10861268 + MER21B LTR ERV1 1 862 -1 305 316 0 0 chr3 216663449 216663528 -10861050 + L2 LINE L2 3233 3311 -2 300 213 19 83 chr3 216663529 216663637 -10860941 + MIR3 SINE MIR 104 204 -4 1787 165 0 11 chr3 216663729 216664014 -10860564 + AluSx SINE Alu 1 282 -30 1253 20 0 0 chr3 216664324 216664471 -10860107 + L1PA4 LINE L1 6007 6153 -2 859 203 102 129 chr3 216664946 216665009 -10859569 - LTR36 LTR ERV1 -82 529 466 1914 115 0 50 chr3 216665009 216665330 -10859248 + AluSx SINE Alu 1 305 -7 859 203 102 129 chr3 216665330 216665808 -10858770 - LTR36 LTR ERV1 -145 466 3 1334 266 93 45 chr3 216666825 216667554 -10857024 + L2 LINE L2 2543 3296 -17 2163 125 0 7 chr3 216667958 216668262 -10856316 - AluSp SINE Alu -11 302 1 303 140 0 0 chr3 216669419 216669469 -10855109 + (TG)n Simple_repeat Simple_repeat 1 50 0 302 227 23 30 chr3 216670094 216670226 -10854352 + L1M4 LINE L1 2956 3086 -3060 5303 174 61 47 chr3 216670246 216671854 -10852724 + L1MA6 LINE L1 4140 5724 -576 2666 23 7 3 chr3 216671854 216672164 -10852414 + AluY SINE Alu 1 311 0 5303 174 61 47 chr3 216672164 216672223 -10852355 + L1MA6 LINE L1 5724 5781 -519 1967 158 3 13 chr3 216672223 216672526 -10852052 + AluJb SINE Alu 1 300 -12 5303 174 61 47 chr3 216672526 216673002 -10851576 + L1MA6 LINE L1 5781 6300 0 22 0 0 0 chr3 216673139 216673161 -10851417 + AT_rich Low_complexity Low_complexity 1 22 0 1981 230 157 11 chr3 216673161 216673866 -10850712 + L1ME1 LINE L1 5359 6166 0 969 218 14 0 chr3 216674581 216674792 -10849786 - L1PB4 LINE L1 0 6156 5943 723 119 110 0 chr3 216674813 216674931 -10849647 - AluSg SINE Alu -179 131 1 772 160 0 0 chr3 216674932 216675063 -10849515 - L1PB4 LINE L1 -203 5953 5823 294 261 92 70 chr3 216675512 216675654 -10848924 + MIR SINE MIR 9 153 -109 713 198 145 66 chr3 216675655 216675958 -10848620 + MER46C DNA MER2_type 1 327 -11 216 0 0 0 chr3 216678272 216678296 -10846282 + (T)n Simple_repeat Simple_repeat 1 24 0 2387 94 0 3 chr3 216678455 216678764 -10845814 + AluY SINE Alu 1 308 -3 299 266 40 57 chr3 216680757 216680881 -10843697 + MIR3 SINE MIR 74 195 -13 250 265 0 0 chr3 216682410 216682459 -10842119 + MER5A DNA MER1_type 1 49 -140 27 81 0 0 chr3 216682680 216682742 -10841836 + AT_rich Low_complexity Low_complexity 1 62 0 1461 227 30 28 chr3 216682984 216683345 -10841233 - MLT1A1 LTR MaLR 0 365 4 1231 196 67 61 chr3 216683719 216684061 -10840517 - MER2 DNA MER2_type 0 344 1 21 0 0 0 chr3 216684697 216684718 -10839860 + AT_rich Low_complexity Low_complexity 1 21 0 21 71 0 0 chr3 216684825 216684867 -10839711 + AT_rich Low_complexity Low_complexity 1 42 0 317 171 469 0 chr3 216685067 216685178 -10839400 + MER96 DNA MER1_type? 11 173 -2 1501 206 48 0 chr3 216685188 216685479 -10839099 - AluJo SINE Alu -7 305 1 2460 240 30 11 chr3 216685603 216685872 -10838706 + MER82 DNA MER2_type 7 269 -384 297 0 0 0 chr3 216685872 216685905 -10838673 + (CA)n Simple_repeat Simple_repeat 2 34 0 2460 240 30 11 chr3 216685905 216686268 -10838310 + MER82 DNA MER2_type 269 651 -2 250 242 76 0 chr3 216686815 216686881 -10837697 - Charlie7 DNA MER1_type -2535 77 7 213 88 0 0 chr3 216687542 216687565 -10837013 + (TTA)n Simple_repeat Simple_repeat 3 28 -8 1920 108 4 7 chr3 216687565 216687842 -10836736 - AluSx SINE Alu -36 276 1 213 88 0 0 chr3 216687842 216687852 -10836726 + (TTA)n Simple_repeat Simple_repeat 27 36 0 207 374 183 0 chr3 216688508 216688639 -10835939 - MIR3 SINE MIR -9 199 45 764 125 8 8 chr3 216688753 216688873 -10835705 - FLAM_A SINE Alu -13 120 1 310 212 0 0 chr3 216689139 216689205 -10835373 - MER116 DNA Mariner -12 68 3 1922 94 0 120 chr3 216689245 216689586 -10834992 - AluSg SINE Alu 0 300 1 877 77 0 8 chr3 216689669 216689786 -10834792 - AluSg SINE Alu -194 116 1 187 271 17 17 chr3 216690630 216690689 -10833889 - MER5A DNA MER1_type -97 92 34 281 159 16 0 chr3 216691058 216691121 -10833457 + (TG)n Simple_repeat Simple_repeat 2 65 0 188 346 148 0 chr3 216692722 216692803 -10831775 + L2 LINE L2 3143 3235 -37 1065 201 37 18 chr3 216693134 216693151 -10831427 + MER58B DNA MER1_type 64 79 -2341 435 38 0 0 chr3 216693151 216693204 -10831374 + (TA)n Simple_repeat Simple_repeat 1 53 0 2343 97 0 0 chr3 216693204 216693504 -10831074 - AluSg SINE Alu -10 300 1 1065 201 37 18 chr3 216693504 216693758 -10830820 + MER58B DNA MER1_type 78 341 0 22 88 0 0 chr3 216695179 216695236 -10829342 + AT_rich Low_complexity Low_complexity 1 57 0 21 36 0 0 chr3 216696330 216696358 -10828220 + AT_rich Low_complexity Low_complexity 1 28 0 217 331 163 6 chr3 216696735 216696895 -10827683 - MIR SINE MIR -6 256 72 258 338 115 7 chr3 216697568 216697716 -10826862 + MIR3 SINE MIR 34 197 -11 225 233 0 33 chr3 216699228 216699288 -10825290 + GA-rich Low_complexity Low_complexity 3 60 0 2326 104 0 0 chr3 216700087 216700386 -10824192 + AluSx SINE Alu 1 299 -13 2459 73 0 3 chr3 216701017 216701318 -10823260 - AluSq SINE Alu -13 300 1 426 228 110 39 chr3 216702047 216702174 -10822404 - L2 LINE L2 0 3272 3137 249 326 163 0 chr3 216704684 216704813 -10819765 + MIR3 SINE MIR 50 199 -9 2372 87 0 0 chr3 216705671 216705969 -10818609 + AluY SINE Alu 1 298 -13 356 265 86 20 chr3 216706410 216706569 -10818009 - MIR3 SINE MIR -63 145 3 448 285 127 0 chr3 216706797 216706962 -10817616 + MIR SINE MIR 60 245 -17 281 209 75 19 chr3 216707087 216707169 -10817409 - MIR SINE MIR -46 162 74 28 0 0 0 chr3 216709601 216709629 -10814949 + AT_rich Low_complexity Low_complexity 1 28 0 27 29 0 0 chr3 216710399 216710433 -10814145 + AT_rich Low_complexity Low_complexity 1 34 0 679 236 148 7 chr3 216711279 216711589 -10812989 + Looper DNA T2_type 32 385 -1173 948 198 169 4 chr3 216711589 216711862 -10812716 + MER33 DNA MER1_type 1 318 -6 2744 213 105 32 chr3 216711868 216712932 -10811646 + Looper DNA T2_type 360 1536 -22 235 268 42 0 chr3 216713546 216713617 -10810961 + MIR3 SINE MIR 82 155 -53 1640 146 4 4 chr3 216714271 216714525 -10810053 - AluJo SINE Alu -58 254 1 293 117 17 0 chr3 216715045 216715105 -10809473 + (TA)n Simple_repeat Simple_repeat 1 61 0 21 0 0 0 chr3 216715890 216715911 -10808667 + AT_rich Low_complexity Low_complexity 1 21 0 429 271 106 7 chr3 216716206 216716357 -10808221 - MIR3 SINE MIR -8 200 35 260 333 0 12 chr3 216716596 216716677 -10807901 + MIR3 SINE MIR 115 194 -14 275 268 60 93 chr3 216717089 216717272 -10807306 - MIR SINE MIR -25 237 61 185 250 271 0 chr3 216717610 216717706 -10806872 + L2 LINE L2 3184 3305 -8 244 348 22 22 chr3 216717727 216717865 -10806713 + L2 LINE L2 2918 3055 -217 229 191 32 0 chr3 216718054 216718117 -10806461 - LTR66 LTR ERVL -147 463 399 423 0 0 0 chr3 216718670 216718717 -10805861 + (TA)n Simple_repeat Simple_repeat 1 47 0 462 289 103 40 chr3 216719864 216720695 -10803883 + L1MEc LINE L1 1603 2467 -3748 300 264 200 26 chr3 216720696 216720851 -10803727 + L1MEc LINE L1 2504 2685 -3530 2326 104 0 0 chr3 216720943 216721242 -10803336 + AluSx SINE Alu 1 299 -13 2459 73 0 3 chr3 216721873 216722174 -10802404 - AluSq SINE Alu -13 300 1 426 228 110 39 chr3 216722904 216723031 -10801547 - L2 LINE L2 0 3272 3137 249 326 163 0 chr3 216725541 216725670 -10798908 + MIR3 SINE MIR 50 199 -9 2372 87 0 0 chr3 216726528 216726826 -10797752 + AluY SINE Alu 1 298 -13 356 265 86 20 chr3 216727267 216727426 -10797152 - MIR3 SINE MIR -63 145 3 21 71 0 0 chr3 216727780 216727822 -10796756 + AT_rich Low_complexity Low_complexity 1 42 0 213 39 0 0 chr3 216728103 216728129 -10796449 + (TA)n Simple_repeat Simple_repeat 2 27 0 2469 73 0 0 chr3 216728129 216728429 -10796149 - AluY SINE Alu -11 300 1 1696 196 140 21 chr3 216728541 216728580 -10795998 - MLT2B1 LTR ERVL 0 520 487 483 18 0 0 chr3 216728580 216728636 -10795942 + (TA)n Simple_repeat Simple_repeat 1 56 0 1696 196 140 21 chr3 216728636 216729061 -10795517 - MLT2B1 LTR ERVL -33 487 1 221 309 57 57 chr3 216730016 216730139 -10794439 - MIR SINE MIR -68 140 18 258 246 64 88 chr3 216731004 216731175 -10793403 - LTR16A1 LTR ERVL -6 451 285 21 0 0 0 chr3 216731503 216731524 -10793054 + AT_rich Low_complexity Low_complexity 1 21 0 291 346 0 10 chr3 216731642 216731743 -10792835 + MIR SINE MIR 24 123 -139 186 245 61 0 chr3 216731797 216731846 -10792732 + L2 LINE L2 3216 3267 -5 995 283 48 83 chr3 216731879 216732540 -10792038 - L2 LINE L2 0 3313 2675 21 82 0 0 chr3 216733577 216733626 -10790952 + AT_rich Low_complexity Low_complexity 1 49 0 413 258 86 68 chr3 216734813 216734976 -10789602 + MER91B DNA MER1_type 14 179 -11 1008 173 11 22 chr3 216735102 216735281 -10789297 - FRAM SINE Alu 0 176 1 390 364 20 20 chr3 216736288 216736439 -10788139 + L2 LINE L2 3117 3267 -5 444 278 138 13 chr3 216738270 216739257 -10785321 + L1MEc LINE L1 1603 2685 -3530 1858 144 27 7 chr3 216739347 216739664 -10784914 + AluSq SINE Alu 1 323 0 301 260 20 10 chr3 216739667 216739767 -10784811 + L1MEc LINE L1 2920 3020 -3195 1582 150 42 15 chr3 216739780 216740040 -10784538 + AluJo SINE Alu 15 281 -31 327 49 0 0 chr3 216740040 216740081 -10784497 + (CA)n Simple_repeat Simple_repeat 1 41 0 269 261 77 19 chr3 216740159 216740420 -10784158 + L1MEc LINE L1 3104 3379 -2836 25 83 0 0 chr3 216740430 216740490 -10784088 + AT_rich Low_complexity Low_complexity 1 60 0 429 350 5 10 chr3 216740517 216740723 -10783855 + L1MEc LINE L1 3404 3608 -2607 3565 273 91 20 chr3 216740747 216742933 -10781645 + L1MC3 LINE L1 1884 4402 -2024 2163 81 0 66 chr3 216742933 216743253 -10781325 + AluY SINE Alu 1 299 -12 3565 273 91 20 chr3 216743253 216743896 -10780682 + L1MC3 LINE L1 4402 4998 -1428 5018 224 50 17 chr3 216743897 216745704 -10778874 + L1MC3 LINE L1 5077 5668 -758 2570 65 3 0 chr3 216745756 216746066 -10778512 + AluY SINE Alu 1 311 0 1143 245 50 58 chr3 216746074 216746498 -10778080 + L1ME LINE L1 3438 3857 -2289 2508 54 0 6 chr3 216746498 216746811 -10777767 + AluY SINE Alu 1 311 0 1143 245 50 58 chr3 216746811 216747002 -10777576 + L1ME LINE L1 3857 4048 -2098 419 319 27 5 chr3 216747107 216747295 -10777283 + L1ME LINE L1 5513 5704 -417 246 105 0 0 chr3 216747539 216747577 -10777001 + (TAAA)n Simple_repeat Simple_repeat 3 40 0 251 233 82 14 chr3 216748808 216748881 -10775697 - MIR SINE MIR -118 144 67 240 35 0 0 chr3 216749080 216749109 -10775469 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 401 293 32 38 chr3 216749337 216749494 -10775084 + MER5A DNA MER1_type 15 170 -19 334 191 83 60 chr3 216749909 216749993 -10774585 + MER5B DNA MER1_type 90 175 -3 280 286 51 10 chr3 216751008 216751106 -10773472 + MIR SINE MIR 80 181 -81 231 306 127 18 chr3 216751333 216751518 -10773060 + MIR SINE MIR 2 216 -17 23 0 0 0 chr3 216751521 216751544 -10773034 + AT_rich Low_complexity Low_complexity 1 23 0 23 33 0 0 chr3 216752120 216752150 -10772428 + AT_rich Low_complexity Low_complexity 1 30 0 2087 135 33 0 chr3 216752304 216752666 -10771912 - L1MC2 LINE L1 -361 5983 5610 1361 180 78 45 chr3 216752666 216752999 -10771579 + MER2 DNA MER2_type 2 345 0 32 0 0 0 chr3 216752999 216753031 -10771547 + AT_rich Low_complexity Low_complexity 1 32 0 2123 227 24 14 chr3 216753031 216753958 -10770620 - L1MC2 LINE L1 -743 5403 4663 371 172 0 50 chr3 216753938 216754037 -10770541 - L1MC2 LINE L1 -2178 3968 3875 * 7017 57 12 0 chr3 216754038 216755124 -10769454 - L1PA7 LINE L1 -2 6152 5062 1082 189 19 28 chr3 216755124 216755336 -10769242 - AluJo SINE Alu -16 296 87 776 202 0 6 chr3 216755336 216755504 -10769074 - L1MC2 LINE L1 -2268 3878 3712 182 361 60 0 chr3 216755746 216755829 -10768749 - L2 LINE L2 -22 3291 3204 366 346 51 32 chr3 216756403 216756559 -10768019 - L2 LINE L2 -2 3270 3112 185 326 0 0 chr3 216756551 216756600 -10767978 + L2 LINE L2 3256 3304 -9 * 467 239 0 34 chr3 216756607 216756724 -10767854 - L2 LINE L2 -1 3312 3200 4925 100 112 0 chr3 216757193 216757936 -10766642 - LTR12 LTR ERV1 0 826 1 302 32 79 16 chr3 216758855 216758918 -10765660 + T-rich Low_complexity Low_complexity 4 70 0 225 65 0 0 chr3 216760323 216760354 -10764224 + (CA)n Simple_repeat Simple_repeat 2 32 0 241 264 85 8 chr3 216760364 216760493 -10764085 - L1ME4a LINE L1 -14 6107 5969 2329 89 7 0 chr3 216760885 216761176 -10763402 - AluSp SINE Alu -20 293 1 2331 116 0 0 chr3 216761387 216761688 -10762890 + AluSx SINE Alu 1 301 -11 347 309 108 7 chr3 216762388 216762527 -10762051 - MIR SINE MIR -53 209 57 396 229 28 37 chr3 216763734 216763843 -10760735 + MIR SINE MIR 35 142 -120 241 268 106 14 chr3 216763900 216764042 -10760536 + L1ME1 LINE L1 5994 6148 -18 342 0 0 0 chr3 216764306 216764344 -10760234 + (TTCA)n Simple_repeat Simple_repeat 4 41 0 378 350 32 60 chr3 216764363 216764743 -10759835 - L2 LINE L2 -38 3234 2866 185 304 0 0 chr3 216765587 216765633 -10758945 + MIR3 SINE MIR 160 205 -3 190 217 130 0 chr3 216765737 216765806 -10758772 - MIR3 SINE MIR 0 208 131 304 343 135 17 chr3 216765995 216766173 -10758405 + MIR SINE MIR 58 256 -6 441 0 0 0 chr3 216766279 216766328 -10758250 + (CA)n Simple_repeat Simple_repeat 1 49 0 218 318 68 0 chr3 216766978 216767066 -10757512 + MIR SINE MIR 49 142 -66 1478 255 59 46 chr3 216767419 216767610 -10756968 - L2 LINE L2 -2 3311 3124 2010 114 4 0 chr3 216767610 216767881 -10756697 + AluSp SINE Alu 42 313 0 1478 255 59 46 chr3 216767881 216768436 -10756142 - L2 LINE L2 -189 3124 2552 227 279 19 96 chr3 216768500 216768604 -10755974 - L2 LINE L2 -165 3107 3012 518 267 34 17 chr3 216769364 216769540 -10755038 + MER97c DNA MER1_type? 1 179 -911 330 277 77 21 chr3 216769892 216770047 -10754531 + MIR SINE MIR 35 191 -62 543 129 29 29 chr3 216771114 216771253 -10753325 + CT-rich Low_complexity Low_complexity 4 142 0 359 143 26 0 chr3 216771245 216771322 -10753256 + C-rich Low_complexity Low_complexity 2 80 0 * 661 140 0 0 chr3 216771337 216771437 -10753141 - AluJ/FLAM SINE Alu -212 100 1 382 299 146 15 chr3 216771613 216771750 -10752828 + MIR3 SINE MIR 33 187 -21 292 319 60 48 chr3 216773913 216774079 -10750499 - MIR3 SINE MIR -34 174 7 23 0 0 0 chr3 216776272 216776295 -10748283 + AT_rich Low_complexity Low_complexity 1 23 0 204 290 50 20 chr3 216776352 216776452 -10748126 + MIR SINE MIR 41 143 -65 289 306 102 0 chr3 216776668 216776766 -10747812 - MER91A DNA MER1_type -3 193 86 235 306 16 0 chr3 216776766 216776828 -10747750 - MER91A DNA MER1_type -24 172 110 284 317 70 28 chr3 216776875 216777017 -10747561 + MIR3 SINE MIR 40 187 -21 2153 99 7 11 chr3 216777623 216777932 -10746646 + AluSx SINE Alu 1 308 0 278 325 9 44 chr3 216778067 216778181 -10746397 - MIR SINE MIR -64 144 35 351 0 0 0 chr3 216779365 216779404 -10745174 + (TG)n Simple_repeat Simple_repeat 2 40 0 799 209 33 0 chr3 216779467 216779620 -10744958 + FAM SINE Alu 1 158 -17 225 0 0 0 chr3 216779624 216779649 -10744929 + (GA)n Simple_repeat Simple_repeat 2 26 0 618 200 90 70 chr3 216780420 216780620 -10743958 - MER20 DNA MER1_type 0 219 16 2155 80 59 7 chr3 216780622 216780911 -10743667 - AluSq SINE Alu -9 304 1 212 289 186 13 chr3 216780930 216781086 -10743492 + L2 LINE L2 2575 2757 -557 2188 30 4 0 chr3 216781153 216781444 -10743134 - L1PA3 LINE L1 0 6155 5888 350 304 24 8 chr3 216781603 216781728 -10742850 + L2 LINE L2 2467 2593 -721 477 0 0 0 chr3 216781783 216781836 -10742742 + (TG)n Simple_repeat Simple_repeat 2 54 0 946 294 90 42 chr3 216781905 216782385 -10742193 + L2 LINE L2 2811 3313 0 272 302 87 99 chr3 216782457 216782709 -10741869 + L2 LINE L2 3020 3268 -4 2275 104 0 0 chr3 216782866 216783163 -10741415 - AluSx SINE Alu -15 297 1 307 186 0 43 chr3 216783465 216783535 -10741043 + MER5B DNA MER1_type 1 67 -111 2288 100 0 22 chr3 216784078 216784397 -10740181 - AluSx SINE Alu 0 312 1 486 339 81 16 chr3 216784845 216785093 -10739485 - L3 LINE CR1 -16 1561 1298 2202 121 3 0 chr3 216785369 216785666 -10738912 - AluSx SINE Alu -14 298 1 236 262 135 48 chr3 216786163 216786289 -10738289 + MIR SINE MIR 116 252 -10 203 391 17 9 chr3 216786304 216786419 -10738159 + L2 LINE L2 3197 3312 -1 259 287 69 0 chr3 216786434 216786535 -10738043 + L1ME3A LINE L1 6028 6135 -35 229 415 11 0 chr3 216786579 216786673 -10737905 - L3 LINE CR1 -74 1503 1409 227 209 0 33 chr3 216787262 216787353 -10737225 + (TG)n Simple_repeat Simple_repeat 2 89 0 2251 98 47 0 chr3 216787626 216787922 -10736656 + AluSx SINE Alu 1 310 -2 1264 22 16 28 chr3 216787935 216788117 -10736461 + (GAAA)n Simple_repeat Simple_repeat 1 180 0 6928 45 0 11 chr3 216790035 216790953 -10733625 - L1PA7 LINE L1 0 6154 5221 207 0 0 0 chr3 216792022 216792045 -10732533 + (TG)n Simple_repeat Simple_repeat 2 24 0 342 98 0 0 chr3 216792097 216792148 -10732430 + (TA)n Simple_repeat Simple_repeat 2 52 0 360 193 28 0 chr3 216792186 216792295 -10732283 + (TA)n Simple_repeat Simple_repeat 2 113 0 358 314 131 0 chr3 216792448 216792601 -10731977 + MIR3 SINE MIR 31 203 -5 206 174 22 0 chr3 216793168 216793214 -10731364 + T-rich Low_complexity Low_complexity 2 48 0 220 163 61 0 chr3 216793237 216793286 -10731292 + L2 LINE L2 3213 3264 -8 228 248 148 40 chr3 216794058 216794159 -10730419 + MIR3 SINE MIR 15 126 -82 2460 60 6 19 chr3 216795413 216795748 -10728830 - AluY SINE Alu 0 331 1 21 0 0 0 chr3 216796183 216796204 -10728374 + AT_rich Low_complexity Low_complexity 1 21 0 2177 117 64 3 chr3 216798174 216798517 -10726061 - THE1B LTR MaLR 0 364 1 297 254 127 16 chr3 216798854 216798980 -10725598 + MER103 DNA DNA 17 156 -10 1305 261 194 26 chr3 216799020 216799521 -10725057 + MLT1E LTR MaLR 1 585 -8 1470 138 35 69 chr3 216799544 216799834 -10724744 - AluJo SINE Alu -32 280 1 197 272 143 61 chr3 216800307 216800454 -10724124 + L3 LINE CR1 1059 1217 -360 2021 143 0 13 chr3 216801066 216801373 -10723205 + AluSx SINE Alu 1 303 -9 2016 132 0 22 chr3 216801604 216801915 -10722663 + AluSx SINE Alu 1 304 -8 2325 95 0 0 chr3 216802207 216802501 -10722077 + AluSg SINE Alu 2 295 -15 2353 242 98 47 chr3 216802606 216803400 -10721178 + MER21B LTR ERV1 1 835 -28 206 376 11 11 chr3 216804084 216804177 -10720401 + MIR SINE MIR 21 113 -149 291 381 74 30 chr3 216805180 216805450 -10719128 + L2 LINE L2 2991 3272 0 321 288 108 29 chr3 216805658 216805797 -10718781 + MIR3 SINE MIR 38 187 -21 1252 51 0 0 chr3 216805857 216806013 -10718565 + L1PA4 LINE L1 5997 6152 -3 321 342 92 13 chr3 216806200 216806352 -10718226 - MIR3 SINE MIR -8 200 37 23 0 0 0 chr3 216807102 216807125 -10717453 + AT_rich Low_complexity Low_complexity 1 23 0 303 344 91 41 chr3 216807162 216807383 -10717195 + L1ME4a LINE L1 5307 5538 -2270 46 0 0 0 chr3 216807518 216807564 -10717014 + AT_rich Low_complexity Low_complexity 1 46 0 225 253 99 33 chr3 216807581 216807672 -10716906 + L1ME4a LINE L1 5567 5663 -458 2273 66 0 17 chr3 216808229 216808544 -10716034 + AluSx SINE Alu 1 310 0 2558 45 3 16 chr3 216809119 216809428 -10715150 + AluSp SINE Alu 1 305 -8 240 200 0 0 chr3 216810296 216810346 -10714232 + (TATG)n Simple_repeat Simple_repeat 2 51 0 180 176 0 0 chr3 216810351 216810385 -10714193 + (CATATA)n Simple_repeat Simple_repeat 4 37 0 196 333 68 38 chr3 216811077 216811209 -10713369 - MIR SINE MIR -106 156 21 223 234 94 16 chr3 216812779 216812843 -10711735 + MIR SINE MIR 37 105 -103 313 247 0 56 chr3 216813438 216813527 -10711051 - L2 LINE L2 -3 3310 3227 276 329 210 31 chr3 216813541 216813894 -10710684 - L2 LINE L2 -353 2961 2546 2246 116 0 3 chr3 216814008 216814318 -10710260 - AluSq SINE Alu -2 311 3 21 0 0 0 chr3 216814470 216814491 -10710087 + AT_rich Low_complexity Low_complexity 1 21 0 298 311 169 50 chr3 216814520 216814739 -10709839 + MIR SINE MIR 18 262 0 2282 104 3 0 chr3 216814966 216815263 -10709315 + AluSp SINE Alu 2 299 -14 25 51 0 0 chr3 216815474 216815513 -10709065 + AT_rich Low_complexity Low_complexity 1 39 0 458 252 45 112 chr3 216815528 216815992 -10708586 + L1ME4a LINE L1 5689 6121 0 327 25 0 0 chr3 216816228 216816268 -10708310 + (CAAA)n Simple_repeat Simple_repeat 2 41 0 322 301 57 0 chr3 216816457 216816580 -10707998 + MLT1J2 LTR MaLR 39 168 -282 54 56 0 0 chr3 216816951 216817040 -10707538 + AT_rich Low_complexity Low_complexity 1 89 0 6461 133 17 7 chr3 216817505 216818687 -10705891 + L1MA6 LINE L1 5112 6298 -2 1925 85 0 0 chr3 216818963 216819199 -10705379 - AluSc SINE Alu -25 284 49 199 413 37 52 chr3 216820270 216820541 -10704037 + L2 LINE L2 2918 3184 -88 1811 145 80 0 chr3 216820687 216820998 -10703580 - MER1B DNA MER1_type 0 337 2 830 312 114 33 chr3 216822252 216822867 -10701711 - L2 LINE L2 0 3313 2650 22 0 0 0 chr3 216824177 216824199 -10700379 + AT_rich Low_complexity Low_complexity 1 22 0 2264 117 3 0 chr3 216824318 216824625 -10699953 - AluSg SINE Alu -1 309 2 2549 40 0 0 chr3 216826308 216826609 -10697969 - AluYa5 SINE Alu -10 301 1 229 265 48 48 chr3 216828165 216828248 -10696330 - MIR3 SINE MIR -13 195 113 189 0 0 0 chr3 216829897 216829918 -10694660 + (TA)n Simple_repeat Simple_repeat 1 21 0 242 254 0 0 chr3 216832140 216832195 -10692383 - MIR SINE MIR -108 154 100 1621 179 26 93 chr3 216832259 216832677 -10691901 + MLT1B LTR MaLR 1 390 0 1876 91 8 19 chr3 216832957 216833220 -10691358 + AluSc SINE Alu 37 296 -13 306 0 0 0 chr3 216834139 216834173 -10690405 + (TG)n Simple_repeat Simple_repeat 2 35 0 500 322 24 10 chr3 216834237 216834442 -10690136 + L2 LINE L2 2649 2856 -458 256 352 85 40 chr3 216834493 216834740 -10689838 + L2 LINE L2 2920 3177 -95 190 298 35 0 chr3 216834892 216834949 -10689629 + L2 LINE L2 3234 3292 -21 216 267 17 0 chr3 216836021 216836081 -10688497 - L2 LINE L2 -212 3060 3000 491 326 20 20 chr3 216836792 216836939 -10687639 + MIR3 SINE MIR 19 165 -43 938 194 22 11 chr3 216836962 216837194 -10687384 - AluJo SINE Alu -26 286 1 201 195 0 0 chr3 216837843 216837884 -10686694 + (TG)n Simple_repeat Simple_repeat 2 42 0 187 274 20 0 chr3 216838101 216838152 -10686426 + MIR SINE MIR 103 154 -108 2341 93 3 3 chr3 216838163 216838475 -10686103 - AluSq SINE Alu -1 312 1 410 370 75 23 chr3 216838626 216838891 -10685687 - L3 LINE CR1 -12 1565 1287 381 273 73 55 chr3 216840207 216840357 -10684221 - MIR SINE MIR 0 262 107 1825 178 0 3 chr3 216840357 216840655 -10683923 + AluJo SINE Alu 1 297 -15 381 273 73 55 chr3 216840655 216840669 -10683909 - MIR SINE MIR -155 107 95 279 0 0 0 chr3 216841717 216841748 -10682830 + (TA)n Simple_repeat Simple_repeat 1 31 0 358 317 0 20 chr3 216842846 216842947 -10681631 - MIR3 SINE MIR -24 184 86 201 121 0 0 chr3 216843609 216843642 -10680936 + (TCCA)n Simple_repeat Simple_repeat 3 35 0 439 250 58 8 chr3 216843651 216843771 -10680807 - L2 LINE L2 0 3272 3147 263 254 0 0 chr3 216843897 216843952 -10680626 - L2 LINE L2 -4 3309 3255 253 228 18 0 chr3 216844565 216844622 -10679956 - Charlie8 DNA MER1_type -1004 1413 1356 563 221 51 123 chr3 216844642 216844764 -10679814 - MER5A DNA MER1_type 0 189 85 2424 68 0 0 chr3 216844764 216845057 -10679521 - AluY SINE Alu -18 293 1 563 221 51 123 chr3 216845057 216845129 -10679449 - MER5A DNA MER1_type -104 85 9 1950 137 26 40 chr3 216845244 216845624 -10678954 - THE1C LTR MaLR 0 375 1 1949 128 40 20 chr3 216846188 216846492 -10678086 + AluSg SINE Alu 1 310 0 635 320 32 20 chr3 216847308 216847561 -10677017 + MIR SINE MIR 7 262 0 3676 103 11 0 chr3 216848183 216848708 -10675870 + MER41A LTR ERV1 1 531 -23 781 287 22 9 chr3 216848931 216849154 -10675424 - MIR SINE MIR -30 232 7 264 59 0 0 chr3 216849655 216849689 -10674889 + MADE1 DNA Mariner 45 78 -2 563 150 70 0 chr3 216849899 216849999 -10674579 + AluSg/x SINE Alu 194 300 -9 2414 96 0 3 chr3 216851729 216852042 -10672536 + AluSq SINE Alu 1 312 -1 1340 189 68 4 chr3 216852301 216852596 -10671982 + AluJo SINE Alu 1 312 0 337 310 102 39 chr3 216852610 216852971 -10671607 + L1M4 LINE L1 4619 5002 -1144 226 198 12 47 chr3 216853097 216853183 -10671395 + A-rich Low_complexity Low_complexity 5 87 0 1927 149 3 0 chr3 216853367 216853662 -10670916 + AluSx SINE Alu 2 297 -15 435 238 49 0 chr3 216853836 216853958 -10670620 + L1MD3 LINE L1 7630 7757 -238 222 292 104 21 chr3 216853974 216854070 -10670508 - L2 LINE L2 -5 3308 3205 181 167 17 50 chr3 216854483 216854543 -10670035 + GA-rich Low_complexity Low_complexity 3 60 0 3257 118 28 41 chr3 216854779 216855313 -10669265 - MER1A DNA MER1_type 0 527 1 750 241 42 26 chr3 216856523 216856788 -10667790 + L1ME1 LINE L1 5875 6143 -23 28 48 0 0 chr3 216856788 216856830 -10667748 + AT_rich Low_complexity Low_complexity 1 42 0 2045 156 0 0 chr3 216856849 216857156 -10667422 - AluSx SINE Alu -2 310 4 209 333 27 13 chr3 216857257 216857332 -10667246 + MIR SINE MIR 40 115 -147 200 379 103 14 chr3 216858502 216858647 -10665931 - MIR SINE MIR -73 189 32 23 0 0 0 chr3 216858950 216858973 -10665605 + AT_rich Low_complexity Low_complexity 1 23 0 497 141 0 0 chr3 216860181 216860266 -10664312 + AluY SINE Alu 218 302 -9 216 0 0 0 chr3 216860496 216860520 -10664058 + (A)n Simple_repeat Simple_repeat 1 24 0 190 290 29 0 chr3 216860666 216860735 -10663843 - L3 LINE CR1 -5 1572 1502 2403 89 3 0 chr3 216860917 216861220 -10663358 + AluSp SINE Alu 1 304 -9 246 307 95 29 chr3 216861409 216861546 -10663032 - MIR SINE MIR -66 196 51 1628 184 0 50 chr3 216862911 216863047 -10661531 + AluJb SINE Alu 1 142 -170 396 0 0 0 chr3 216863047 216863091 -10661487 + (CA)n Simple_repeat Simple_repeat 2 45 0 248 0 0 30 chr3 216863101 216863134 -10661444 + (TA)n Simple_repeat Simple_repeat 1 32 0 1628 184 0 50 chr3 216863134 216863307 -10661271 + AluJb SINE Alu 151 305 -7 22 0 0 0 chr3 216863756 216863778 -10660800 + AT_rich Low_complexity Low_complexity 1 22 0 276 30 0 0 chr3 216864438 216864471 -10660107 + (TG)n Simple_repeat Simple_repeat 2 34 0 618 174 61 15 chr3 216865568 216865700 -10658878 - L1MA9 LINE L1 -9 6303 6166 377 251 144 71 chr3 216866978 216867292 -10657286 - L2 LINE L2 -227 3086 2752 999 196 45 136 chr3 216867578 216867849 -10656729 + MLT2C1 LTR ERVL 17 238 -159 2420 60 3 10 chr3 216867849 216868150 -10656428 + AluY SINE Alu 1 299 -12 999 196 45 136 chr3 216868150 216868297 -10656281 + MLT2C1 LTR ERVL 238 397 0 186 118 0 0 chr3 216868789 216868823 -10655755 + (TTTAA)n Simple_repeat Simple_repeat 2 35 0 4006 159 24 61 chr3 216868848 216869967 -10654611 + L1MA5 LINE L1 5092 6172 -128 2058 98 0 4 chr3 216870223 216870489 -10654089 + AluSq SINE Alu 1 265 -48 694 216 20 0 chr3 216871880 216872033 -10652545 + MER103 DNA DNA 11 166 0 720 351 184 27 chr3 216872102 216873037 -10651541 - L3 LINE CR1 -97 1480 399 2595 78 3 3 chr3 216874095 216874439 -10650139 - L1PA8 LINE L1 -13 6159 5816 267 300 33 0 chr3 216874560 216874650 -10649928 - MIR SINE MIR -91 171 79 327 237 0 0 chr3 216874657 216874750 -10649828 + (TA)n Simple_repeat Simple_repeat 1 93 0 523 250 21 0 chr3 216874754 216874796 -10649782 - L1MA10 LINE L1 -13 6321 6280 1245 278 25 23 chr3 216874796 216875232 -10649346 - L1ME2 LINE L1 -49 6115 5679 1272 236 130 41 chr3 216875243 216875460 -10649118 - L1ME2 LINE L1 -743 5403 5207 2215 94 0 26 chr3 216875460 216875768 -10648810 - AluSq SINE Alu -13 300 1 1272 236 130 41 chr3 216875768 216876136 -10648442 - L1ME2 LINE L1 -939 5207 4766 220 315 58 104 chr3 216876449 216876709 -10647869 - L3 LINE CR1 -6 1571 1324 1298 176 58 85 chr3 216877918 216878316 -10646262 + MLT1B LTR MaLR 4 390 0 352 299 31 10 chr3 216878368 216878465 -10646113 + L2 LINE L2 3165 3263 -9 428 210 266 14 chr3 216879216 216879359 -10645219 + MER5A DNA MER1_type 9 187 -2 293 293 90 15 chr3 216881155 216881288 -10643290 + L2 LINE L2 3044 3186 -86 586 213 15 7 chr3 216882930 216883066 -10641512 - L1PB4 LINE L1 0 6156 6020 368 303 154 19 chr3 216883797 216884005 -10640573 + MIR SINE MIR 21 256 -6 592 238 0 0 chr3 216884649 216884771 -10639807 + MIR SINE MIR 39 160 -102 1679 168 6 65 chr3 216885999 216886321 -10638257 - AluJb SINE Alu -9 303 1 205 370 34 8 chr3 216886574 216886693 -10637885 - L2 LINE L2 0 3272 3151 1132 251 127 18 chr3 216887157 216887544 -10637034 + MLT1J1 LTR MaLR 16 444 -2 202 267 83 0 chr3 216887746 216887806 -10636772 + L2 LINE L2 2607 2671 -643 1217 226 0 0 chr3 216887829 216888095 -10636483 - L1 LINE L1 -3113 3033 2768 384 169 0 0 chr3 216888093 216888158 -10636420 + L1PB1 LINE L1 5727 5791 -360 * 242 200 21 32 chr3 216888158 216888253 -10636325 + (CATATA)n Simple_repeat Simple_repeat 3 96 0 2510 104 0 23 chr3 216888270 216888655 -10635923 + L1PB1 LINE L1 5776 6151 0 345 293 179 18 chr3 216888797 216889020 -10635558 + L2 LINE L2 2871 3149 -164 949 120 0 0 chr3 216889020 216889153 -10635425 - FLAM_C SINE Alu 0 133 1 345 293 179 18 chr3 216889153 216889209 -10635369 + L2 LINE L2 3149 3195 -118 711 309 104 64 chr3 216891620 216892219 -10632359 - L2 LINE L2 -1182 2132 1499 219 69 0 0 chr3 216892219 216892248 -10632330 + (TTA)n Simple_repeat Simple_repeat 2 30 0 711 309 104 64 chr3 216892248 216892351 -10632227 - L2 LINE L2 -1815 1499 1402 234 350 16 32 chr3 216892345 216892468 -10632110 - MIR3 SINE MIR -3 205 85 * 934 101 65 0 chr3 216893986 216894125 -10630453 - AluSp/q SINE Alu -10 303 156 1505 119 0 5 chr3 216894133 216894334 -10630244 - AluSx SINE Alu -112 200 1 381 294 74 23 chr3 216894411 216894710 -10629868 + L1ME4a LINE L1 5512 5825 -296 381 279 91 36 chr3 216894727 216894946 -10629632 + L1ME4a LINE L1 5872 6102 -19 212 186 136 17 chr3 216895277 216895336 -10629242 - L3 LINE CR1 -2 1575 1510 276 287 62 87 chr3 216896038 216896233 -10628345 + MIR3 SINE MIR 19 208 0 2147 137 0 3 chr3 216896235 216896541 -10628037 + AluSx SINE Alu 1 305 -7 251 270 54 40 chr3 216897082 216897156 -10627422 - L2 LINE L2 -57 3215 3141 2286 106 10 6 chr3 216897211 216897522 -10627056 + AluSq SINE Alu 1 312 -1 270 81 0 0 chr3 216898180 216898217 -10626361 + (CA)n Simple_repeat Simple_repeat 2 38 0 236 352 57 0 chr3 216898670 216898775 -10625803 - MIR SINE MIR -62 146 36 255 250 24 48 chr3 216899594 216899678 -10624900 + MIR SINE MIR 110 191 -71 443 288 0 64 chr3 216900193 216900318 -10624260 + L2 LINE L2 3150 3266 -6 645 186 103 73 chr3 216900944 216901066 -10623512 + MIR SINE MIR 1 134 -128 2075 127 7 0 chr3 216901066 216901395 -10623183 + AluSx SINE Alu 1 331 0 645 186 103 73 chr3 216901395 216901475 -10623103 + MIR SINE MIR 134 210 -52 541 278 60 36 chr3 216901762 216902014 -10622564 + MIR SINE MIR 4 261 -1 196 374 51 36 chr3 216902148 216902343 -10622235 - L2 LINE L2 -342 2972 2775 2336 99 0 13 chr3 216902396 216902710 -10621868 - AluSp SINE Alu -3 310 1 1916 154 0 7 chr3 216903980 216904297 -10620281 + AluSx SINE Alu 1 315 0 396 297 93 55 chr3 216904324 216904430 -10620148 + MIR SINE MIR 47 164 -98 1257 180 8 8 chr3 216904430 216904691 -10619887 - L1MA4 LINE L1 -1 6299 6039 396 297 93 55 chr3 216904691 216904766 -10619812 + MIR SINE MIR 164 235 -27 22 35 0 0 chr3 216904919 216904948 -10619630 + AT_rich Low_complexity Low_complexity 1 29 0 192 333 0 0 chr3 216906092 216906152 -10618426 - MIR SINE MIR -158 104 45 22 88 0 0 chr3 216906620 216906677 -10617901 + AT_rich Low_complexity Low_complexity 1 57 0 212 184 0 0 chr3 216906946 216906984 -10617594 + A-rich Low_complexity Low_complexity 1 38 0 24 0 0 0 chr3 216907739 216907763 -10616815 + AT_rich Low_complexity Low_complexity 1 24 0 2458 58 0 26 chr3 216909263 216909572 -10615006 + AluY SINE Alu 1 301 -10 1646 70 0 0 chr3 216911175 216911390 -10613188 + L1PA5 LINE L1 5940 6154 0 2476 64 0 0 chr3 216912430 216912725 -10611853 + AluY SINE Alu 1 295 -16 203 357 111 25 chr3 216912775 216913010 -10611568 + L2 LINE L2 2908 3162 -110 2224 112 7 0 chr3 216913959 216914254 -10610324 + AluSx SINE Alu 1 297 -15 22 0 0 0 chr3 216914722 216914744 -10609834 + AT_rich Low_complexity Low_complexity 1 22 0 245 366 30 0 chr3 216916829 216916930 -10607648 - MIR SINE MIR -78 130 27 374 220 17 144 chr3 216917087 216917260 -10607318 - MIR SINE MIR -34 228 78 414 0 0 0 chr3 216917312 216917358 -10607220 + (TA)n Simple_repeat Simple_repeat 2 47 0 2594 40 0 7 chr3 216917606 216917910 -10606668 - AluY SINE Alu -9 302 1 1537 166 217 11 chr3 216918231 216918586 -10605992 + MSTA LTR MaLR 1 428 0 216 229 108 24 chr3 216919001 216919084 -10605494 + MIR SINE MIR 23 112 -96 202 255 11 11 chr3 216920238 216920304 -10604274 - MIR SINE MIR -108 154 90 459 264 98 12 chr3 216920510 216920673 -10603905 - MIR SINE MIR 0 262 86 2092 120 0 3 chr3 216921960 216922244 -10602334 + AluSq SINE Alu 1 283 -30 26 0 0 0 chr3 216922244 216922270 -10602308 + GC_rich Low_complexity Low_complexity 1 26 0 376 336 45 8 chr3 216922510 216922644 -10601934 - MIR3 SINE MIR -18 190 52 13793 142 28 15 chr3 216922807 216925191 -10599387 + Tigger1 DNA MER2_type 1 2415 -3 2007 92 10 14 chr3 216925809 216926101 -10598477 - AluY SINE Alu -20 291 1 392 255 105 26 chr3 216926210 216926363 -10598215 + L1MDa LINE L1 293 457 -6083 40 0 0 0 chr3 216926460 216926500 -10598078 + AT_rich Low_complexity Low_complexity 1 40 0 374 332 88 47 chr3 216927213 216927532 -10597046 - L3 LINE CR1 -148 1429 1098 215 255 9 113 chr3 216927840 216927946 -10596632 - MIR3 SINE MIR -112 96 2 201 127 238 0 chr3 216928531 216928594 -10595984 - MER5C DNA MER1_type -11 313 236 200 226 48 60 chr3 216928564 216928648 -10595930 - MIR SINE MIR -74 188 106 * 631 336 24 12 chr3 216928728 216928975 -10595603 + MIR SINE MIR 13 262 0 386 250 27 36 chr3 216929488 216929600 -10594978 - MIR SINE MIR -56 206 96 751 180 8 8 chr3 216929988 216930116 -10594462 - FLAM_C SINE Alu -5 128 1 913 155 0 27 chr3 216930162 216930310 -10594268 - FRAM SINE Alu -13 163 20 594 210 13 51 chr3 216930310 216930467 -10594111 - MER20 DNA MER1_type -68 151 1 280 371 61 8 chr3 216930650 216930782 -10593796 + L2 LINE L2 3126 3264 -8 207 279 0 47 chr3 216931249 216931335 -10593243 + CT-rich Low_complexity Low_complexity 1 82 0 22 0 0 0 chr3 216931755 216931777 -10592801 + AT_rich Low_complexity Low_complexity 1 22 0 2216 124 0 0 chr3 216931855 216932154 -10592424 - AluSx SINE Alu -13 299 1 1026 194 14 36 chr3 216932186 216932408 -10592170 + MER20 DNA MER1_type 1 217 -2 364 280 51 48 chr3 216933322 216933468 -10591110 + MIR3 SINE MIR 11 157 -51 312 267 38 69 chr3 216934157 216934302 -10590276 + MIR SINE MIR 12 152 -56 210 247 43 11 chr3 216934865 216934958 -10589620 + GA-rich Low_complexity Low_complexity 4 99 0 323 289 96 37 chr3 216935179 216935366 -10589212 + MIR3 SINE MIR 5 202 -6 2513 33 0 10 chr3 216935802 216936103 -10588475 + AluY SINE Alu 1 298 -13 439 307 53 32 chr3 216938040 216938229 -10586349 - MIR SINE MIR -21 241 49 191 250 52 135 chr3 216938901 216938997 -10585581 + MIR3 SINE MIR 69 156 -52 2081 84 7 40 chr3 216940572 216940868 -10583710 + AluSq SINE Alu 15 300 -13 444 139 0 0 chr3 216940868 216940947 -10583631 + (GGGGA)n Simple_repeat Simple_repeat 3 81 0 306 50 0 0 chr3 216940954 216940994 -10583584 + (CAGAG)n Simple_repeat Simple_repeat 4 43 0 244 186 0 78 chr3 216941568 216941670 -10582908 + GA-rich Low_complexity Low_complexity 4 97 0 220 284 117 74 chr3 216941703 216941865 -10582713 - MIR3 SINE MIR -11 197 29 305 278 101 92 chr3 216942143 216942449 -10582129 - L1M2 LINE L1 -6004 845 537 * 349 274 126 112 chr3 216942234 216942741 -10581837 + L1M2 LINE L1 595 1108 -5741 427 139 0 38 chr3 216943018 216943116 -10581462 + L1PA8 LINE L1 6097 6172 0 204 296 99 0 chr3 216943139 216943220 -10581358 - MIR SINE MIR -127 135 47 306 190 160 20 chr3 216943389 216943489 -10581089 + MIR SINE MIR 21 134 -128 2227 100 37 0 chr3 216943547 216943847 -10580731 + AluSx SINE Alu 1 311 -1 252 122 0 0 chr3 216943847 216943888 -10580690 + (GGAGA)n Simple_repeat Simple_repeat 2 42 0 193 299 28 65 chr3 216944805 216944912 -10579666 - L2 LINE L2 -74 3198 3096 2296 113 0 0 chr3 216944944 216945254 -10579324 + AluSx SINE Alu 1 310 -2 746 219 113 0 chr3 216945542 216945693 -10578885 - MER5B DNA MER1_type -8 170 3 277 271 0 29 chr3 216945955 216946025 -10578553 + LTR40c LTR ERVL 1 68 -397 359 267 56 0 chr3 216946045 216946135 -10578443 - MER5A DNA MER1_type -63 126 32 249 323 31 21 chr3 216946213 216946309 -10578269 - MER5B DNA MER1_type -79 99 3 955 215 5 58 chr3 216946323 216946546 -10578032 + MER20 DNA MER1_type 1 211 -8 21 36 0 0 chr3 216947498 216947526 -10577052 + AT_rich Low_complexity Low_complexity 1 28 0 2159 106 0 0 chr3 216947767 216948081 -10576497 + AluSq SINE Alu 1 314 0 317 350 23 29 chr3 216948144 216948373 -10576205 - MIR SINE MIR -15 247 21 306 50 0 0 chr3 216948532 216948572 -10576006 + (TG)n Simple_repeat Simple_repeat 2 41 0 2140 82 79 10 chr3 216951048 216951340 -10573238 + AluSp SINE Alu 1 312 -1 2364 96 3 0 chr3 216951513 216951814 -10572764 + AluSg SINE Alu 1 302 -8 339 331 65 12 chr3 216952259 216952428 -10572150 + MIR3 SINE MIR 30 207 -1 27 29 0 0 chr3 216953363 216953397 -10571181 + AT_rich Low_complexity Low_complexity 1 34 0 299 366 37 8 chr3 216954919 216955053 -10569525 - MIR3 SINE MIR -11 197 60 4669 40 14 7 chr3 216955471 216956025 -10568553 + LTR6B LTR ERV1 1 558 0 473 300 53 65 chr3 216956350 216956690 -10567888 + L2 LINE L2 2370 2705 -609 3917 242 7 38 chr3 216956695 216957730 -10566848 + L1ME LINE L1 4264 5258 -956 2147 130 3 0 chr3 216957730 216958031 -10566547 + AluSx SINE Alu 1 302 -10 3917 242 7 38 chr3 216958031 216958196 -10566382 + L1ME LINE L1 5258 5427 -787 316 104 21 0 chr3 216959252 216959300 -10565278 + AluSx SINE Alu 1 49 -253 1431 193 4 0 chr3 216959400 216959664 -10564914 + AluSx SINE Alu 39 303 -9 5007 189 56 4 chr3 216959672 216960671 -10563907 + L1MC1 LINE L1 5272 6322 -11 783 261 70 26 chr3 216960688 216961029 -10563549 - MER114 LTR ERV -292 356 1 594 191 24 0 chr3 216961082 216961208 -10563370 + L1MB8 LINE L1 6047 6175 -3 33 25 0 0 chr3 216961344 216961384 -10563194 + AT_rich Low_complexity Low_complexity 1 40 0 22 0 0 0 chr3 216961417 216961439 -10563139 + AT_rich Low_complexity Low_complexity 1 22 0 252 364 161 13 chr3 216961508 216961671 -10562907 + L2 LINE L2 2705 2843 -470 2251 101 0 3 chr3 216961671 216961967 -10562611 - AluY SINE Alu -16 295 1 252 364 161 13 chr3 216961967 216962178 -10562400 + L2 LINE L2 2843 3022 -291 387 0 0 0 chr3 216962178 216962221 -10562357 + (TG)n Simple_repeat Simple_repeat 2 44 0 252 364 161 13 chr3 216962221 216962320 -10562258 + L2 LINE L2 3022 3275 -38 255 217 24 12 chr3 216962341 216962424 -10562154 + (TAAA)n Simple_repeat Simple_repeat 3 86 0 197 313 94 23 chr3 216962451 216962579 -10561999 - L3b LINE CR1 -198 1385 1249 399 324 108 60 chr3 216962612 216962982 -10561596 - L2 LINE L2 -4 3268 2881 745 278 29 0 chr3 216963304 216963513 -10561065 + LTR16C LTR ERVL 247 461 -30 28 29 0 0 chr3 216964159 216964194 -10560384 + AT_rich Low_complexity Low_complexity 1 35 0 387 282 195 0 chr3 216964467 216964616 -10559962 + MER46C DNA MER2_type 3 180 -158 338 231 133 64 chr3 216964665 216964868 -10559710 + L1ME LINE L1 5602 5818 -346 4810 119 36 18 chr3 216965264 216965918 -10558660 - L1PA16 LINE L1 -1 6165 5495 2502 73 0 13 chr3 216965918 216966232 -10558346 - AluY SINE Alu -1 310 1 4810 119 36 18 chr3 216966232 216966308 -10558270 - L1PA16 LINE L1 -671 5495 5422 2309 102 0 0 chr3 216966682 216966976 -10557602 + AluSg SINE Alu 1 294 -16 219 226 16 16 chr3 216967014 216967097 -10557481 + (TA)n Simple_repeat Simple_repeat 1 83 0 1891 121 43 11 chr3 216967376 216967718 -10556860 - LTR7 LTR ERV1 -2 448 48 214 174 0 0 chr3 216968056 216968102 -10556476 + G-rich Low_complexity Low_complexity 1 46 0 800 42 0 0 chr3 216968471 216968566 -10556012 + L1PA11 LINE L1 6047 6141 -33 380 56 130 0 chr3 216968568 216968622 -10555956 + L1PA11 LINE L1 6097 6157 -17 2244 90 23 0 chr3 216968971 216969271 -10555307 + AluSg SINE Alu 1 307 -3 3735 286 34 35 chr3 216969586 216970865 -10553713 - ERVL LTR ERVL -691 5073 3797 974 201 35 61 chr3 216971082 216971254 -10553324 + MLT2B3 LTR ERVL 332 498 -56 566 108 0 11 chr3 216971254 216971347 -10553231 + (TCTA)n Simple_repeat Simple_repeat 2 93 0 974 201 35 61 chr3 216971347 216971403 -10553175 + MLT2B3 LTR ERVL 498 554 0 313 275 60 40 chr3 216971508 216971657 -10552921 + L1MB8 LINE L1 5733 5884 -294 267 250 392 0 chr3 216971899 216972103 -10552475 - L3 LINE CR1 -242 1335 1052 1364 85 21 0 chr3 216972930 216973119 -10551459 - L1P LINE L1 -3457 2689 2497 258 209 0 0 chr3 216973125 216973168 -10551410 + tRNA-Glu-GAG tRNA tRNA 1 43 -32 1718 255 75 41 chr3 216973208 216973785 -10550793 + MLT1E2 LTR MaLR 1 597 -29 606 217 63 23 chr3 216973785 216973960 -10550618 - MER93b LTR ERV1 0 373 192 775 243 61 13 chr3 216974112 216974392 -10550186 - MER21B LTR ERV1 -501 362 1 1523 249 59 46 chr3 216974392 216975090 -10549488 + L1ME1 LINE L1 4581 5287 -859 1125 254 79 3 chr3 216975114 216975457 -10549121 + L1ME1 LINE L1 5545 5913 -253 416 307 39 11 chr3 216975571 216975750 -10548828 - L1PA12 LINE L1 -5216 2365 2182 1868 122 61 109 chr3 216977138 216977532 -10547046 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr3 216977620 216977641 -10546937 + AT_rich Low_complexity Low_complexity 1 21 0 31 0 0 0 chr3 216979307 216979338 -10545240 + AT_rich Low_complexity Low_complexity 1 31 0 747 183 23 0 chr3 216979665 216979796 -10544782 + FRAM SINE Alu 30 163 -13 243 61 0 0 chr3 216980054 216980087 -10544491 + (CA)n Simple_repeat Simple_repeat 2 34 0 565 99 216 18 chr3 216980765 216980876 -10543702 - LTR7 LTR ERV1 -317 133 1 237 65 0 0 chr3 216980876 216980907 -10543671 + (T)n Simple_repeat Simple_repeat 1 31 0 2968 86 98 0 chr3 216981098 216981506 -10543072 + LTR7 LTR ERV1 1 448 -2 20077 93 41 9 chr3 216981508 216984403 -10540175 + HERVH LTR ERV1 1 2987 -4726 860 162 20 0 chr3 216984397 216984545 -10540033 + HERVH LTR ERV1 3140 3290 -4423 * 3363 113 4 4 chr3 216984544 216985038 -10539540 + HERVH LTR ERV1 3500 3993 -3720 4380 142 1 1 chr3 216985040 216985702 -10538876 + HERVH LTR ERV1 4488 5149 -2564 1334 124 28 18 chr3 216985703 216985921 -10538657 + HERVH LTR ERV1 5600 5819 -1894 * 2372 86 62 13 chr3 216985919 216986293 -10538285 + HERVH LTR ERV1 7322 7713 0 3031 76 95 0 chr3 216986293 216986702 -10537876 + LTR7 LTR ERV1 1 448 -2 317 270 45 9 chr3 216987988 216988099 -10536479 + MIR SINE MIR 144 258 -4 898 107 0 0 chr3 216988433 216988554 -10536024 + AluSg/x SINE Alu 177 297 -13 33 66 0 0 chr3 216988988 216989049 -10535529 + AT_rich Low_complexity Low_complexity 1 61 0 2359 110 3 0 chr3 216989334 216989643 -10534935 - AluSp SINE Alu -3 310 1 247 279 49 94 chr3 216989837 216990028 -10534550 + MIR SINE MIR 35 216 -46 528 288 85 29 chr3 216991210 216991491 -10533087 - MER110 LTR ERV1 -27 464 168 372 186 139 0 chr3 216991570 216991656 -10532922 - MER110A LTR ERV1 -292 176 79 2398 77 17 0 chr3 216991814 216992113 -10532465 - AluSg SINE Alu -6 304 1 2061 123 7 7 chr3 216993033 216993334 -10531244 + AluSx SINE Alu 5 305 -7 388 256 2 0 chr3 216993591 216993711 -10530867 + L1ME LINE L1 5618 5738 -383 622 223 83 38 chr3 216993897 216994054 -10530524 + FAM SINE Alu 1 164 -11 22 0 0 0 chr3 216994198 216994220 -10530358 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 216995647 216995669 -10528909 + AT_rich Low_complexity Low_complexity 1 22 0 1073 335 131 29 chr3 216996748 216997261 -10527317 + L2 LINE L2 1038 1497 -1817 2135 140 3 0 chr3 216997261 216997569 -10527009 + AluSx SINE Alu 3 311 -1 1073 335 131 29 chr3 216997569 216997938 -10526640 + L2 LINE L2 1497 2010 -1304 8808 47 6 3 chr3 216998068 216999136 -10525442 + MER11C LTR ERVK 1 1071 0 2101 125 14 0 chr3 216999212 216999508 -10525070 + AluSx SINE Alu 1 300 -12 441 0 0 0 chr3 216999546 216999595 -10524983 + (TTTA)n Simple_repeat Simple_repeat 1 49 0 1995 139 0 0 chr3 216999595 216999875 -10524703 - AluSx SINE Alu -32 280 1 344 143 39 26 chr3 216999875 216999952 -10524626 - L1 LINE L1 -1132 6433 6356 * 3483 194 48 18 chr3 216999930 217000368 -10524210 - L1 LINE L1 -3058 4507 4084 2868 100 20 33 chr3 217000368 217000443 -10524135 - MLT2A1 LTR ERVL -1 443 369 1900 148 23 3 chr3 217000443 217000747 -10523831 - AluSx SINE Alu -2 310 1 2868 100 20 33 chr3 217000747 217001120 -10523458 - MLT2A1 LTR ERVL -75 369 1 3483 194 48 18 chr3 217001120 217001756 -10522822 - L1 LINE L1 -3481 4084 3392 189 0 0 0 chr3 217001756 217001777 -10522801 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 3483 194 48 18 chr3 217001777 217001916 -10522662 - L1 LINE L1 -4173 3392 3259 448 252 0 0 chr3 217001916 217002023 -10522555 - U6 snRNA snRNA 0 107 1 3032 231 54 32 chr3 217002033 217003036 -10521542 + L1 LINE L1 2150 3174 -2972 189 304 25 38 chr3 217004761 217004840 -10519738 + MER5A DNA MER1_type 112 189 0 482 195 24 24 chr3 217005052 217005175 -10519403 + FLAM_C SINE Alu 5 127 -6 778 193 30 0 chr3 217006448 217006645 -10517933 + L1 LINE L1 3167 3369 -2777 26 30 0 0 chr3 217006834 217006867 -10517711 + AT_rich Low_complexity Low_complexity 1 33 0 616 290 0 30 chr3 217006991 217007191 -10517387 + MIR SINE MIR 69 262 0 237 297 20 40 chr3 217007210 217007311 -10517267 + MIR SINE MIR 53 151 -111 2331 69 0 20 chr3 217007360 217007665 -10516913 + AluY SINE Alu 3 301 -10 1690 61 8 46 chr3 217007728 217007989 -10516589 - L1MA1 LINE L1 -436 5866 5616 2925 83 30 11 chr3 217007989 217008414 -10516164 + L1MA1 LINE L1 5862 6302 0 224 233 14 0 chr3 217008553 217008626 -10515952 + CT-rich Low_complexity Low_complexity 4 77 0 236 253 44 137 chr3 217008803 217008985 -10515593 - MER5A DNA MER1_type -5 184 20 656 251 154 15 chr3 217010355 217010622 -10513956 - MER5C DNA MER1_type -17 307 4 181 398 0 0 chr3 217010638 217010731 -10513847 - MIR SINE MIR -61 147 55 24 53 0 0 chr3 217010966 217011004 -10513574 + AT_rich Low_complexity Low_complexity 1 38 0 413 176 25 17 chr3 217011119 217011238 -10513340 + CT-rich Low_complexity Low_complexity 3 122 0 1662 151 59 43 chr3 217011255 217011559 -10513019 - AluSx SINE Alu -1 311 3 4870 117 108 126 chr3 217012681 217014126 -10510452 - pTR5 LTR ERV1 -143 2295 733 293 243 189 18 chr3 217014175 217014286 -10510292 + MER69 DNA AcHobo 6 135 -2391 320 240 0 0 chr3 217014348 217014423 -10510155 + MER69 DNA AcHobo 256 330 -896 823 201 105 59 chr3 217014446 217014770 -10509808 + L1MC4 LINE L1 6742 7080 -962 331 252 16 63 chr3 217014804 217014931 -10509647 + L1MC4 LINE L1 7922 8042 0 1821 260 63 33 chr3 217014945 217015646 -10508932 + MER69 DNA AcHobo 343 1064 -1462 754 208 65 4 chr3 217015667 217015912 -10508666 + MER69 DNA AcHobo 2084 2343 -183 1587 195 0 4 chr3 217015979 217016246 -10508332 + AluJb SINE Alu 25 290 -22 490 269 30 0 chr3 217016354 217016521 -10508057 - L1MC5 LINE L1 -737 7224 7053 * 2473 261 50 16 chr3 217016494 217017518 -10507060 + L1M4 LINE L1 2352 3410 -2736 21 0 0 0 chr3 217017587 217017608 -10506970 + AT_rich Low_complexity Low_complexity 1 21 0 2239 103 3 0 chr3 217017664 217017966 -10506612 + AluSx SINE Alu 1 303 -9 1244 131 0 0 chr3 217017969 217018145 -10506433 + AluSq SINE Alu 128 303 -10 326 320 87 27 chr3 217018917 217019136 -10505442 - MIR SINE MIR -10 252 21 392 293 52 37 chr3 217019162 217019353 -10505225 + MIR SINE MIR 20 213 -49 2365 182 100 2 chr3 217019561 217020061 -10504517 - MER44D DNA MER2_type -1 604 1 448 237 42 34 chr3 217021167 217021285 -10503293 + MIR3 SINE MIR 68 186 -22 2294 104 0 3 chr3 217021408 217021716 -10502862 + AluSp SINE Alu 1 307 -6 418 309 57 51 chr3 217021947 217022122 -10502456 - MER5B DNA MER1_type 0 178 3 324 319 163 7 chr3 217022132 217022273 -10502305 - MER5A DNA MER1_type 0 189 27 307 227 114 0 chr3 217022275 217022363 -10502215 + MER5A DNA MER1_type 4 101 -88 998 239 114 57 chr3 217022379 217022801 -10501777 - MLT2B1 LTR ERVL -74 446 1 1807 212 54 22 chr3 217022894 217023094 -10501484 - Charlie1b DNA MER1_type -2244 517 325 1992 143 10 3 chr3 217023094 217023387 -10501191 - AluSx SINE Alu -17 295 1 1807 212 54 22 chr3 217023387 217023687 -10500891 - Charlie1b DNA MER1_type -2436 325 1 238 139 0 0 chr3 217023913 217023949 -10500629 - MER20 DNA MER1_type -6 213 178 260 306 12 12 chr3 217024955 217025040 -10499538 - MIR SINE MIR -127 135 51 1546 199 32 45 chr3 217025320 217025632 -10498946 + AluJo SINE Alu 1 308 -4 375 73 0 0 chr3 217026056 217026111 -10498467 + (TG)n Simple_repeat Simple_repeat 1 55 0 2052 117 13 7 chr3 217026112 217026411 -10498167 - AluSx SINE Alu -11 301 1 243 306 207 26 chr3 217026607 217026839 -10497739 + L2 LINE L2 2481 2754 -560 273 333 31 124 chr3 217026929 217027445 -10497133 + L2 LINE L2 2805 3272 0 194 184 53 0 chr3 217027877 217027915 -10496663 - MER5A DNA MER1_type -2 187 148 1318 109 8 71 chr3 217027939 217027991 -10496587 + AluJo SINE Alu 86 140 -172 2240 120 0 0 chr3 217027991 217028292 -10496286 + AluSp SINE Alu 1 301 -12 1318 109 8 71 chr3 217028292 217028478 -10496100 + AluJo SINE Alu 140 309 -3 326 342 0 0 chr3 217028480 217028556 -10496022 - MER5A DNA MER1_type -100 89 14 249 336 66 8 chr3 217028675 217028797 -10495781 - L2 LINE L2 -8 3264 3136 1982 153 3 0 chr3 217028859 217029153 -10495425 + AluSx SINE Alu 1 295 -17 449 250 0 0 chr3 217029607 217029711 -10494867 + L2 LINE L2 3207 3310 -3 398 321 27 43 chr3 217029695 217029879 -10494699 - MIR3 SINE MIR -5 203 23 * 2138 111 0 41 chr3 217030944 217031123 -10493455 - AluSq SINE Alu -10 303 141 2643 50 0 0 chr3 217031123 217031426 -10493152 - AluY SINE Alu -8 303 1 2138 111 0 41 chr3 217031426 217031562 -10493016 - AluSq SINE Alu -172 141 1 416 198 66 9 chr3 217031968 217032074 -10492504 - Charlie4 DNA MER1_type -1807 154 43 277 286 143 22 chr3 217032332 217032514 -10492064 + MIR SINE MIR 45 248 -14 180 265 8 17 chr3 217033443 217033560 -10491018 + GA-rich Low_complexity Low_complexity 2 117 0 426 322 46 20 chr3 217033575 217033727 -10490851 + MIR3 SINE MIR 26 181 -27 21 57 0 0 chr3 217034533 217034568 -10490010 + AT_rich Low_complexity Low_complexity 1 35 0 573 309 47 31 chr3 217034741 217034997 -10489581 - MIR SINE MIR 0 262 3 868 194 19 29 chr3 217035087 217035293 -10489285 + Tigger1 DNA MER2_type 14 217 -2201 737 245 29 25 chr3 217035350 217035595 -10488983 + MER112 DNA MER1_type 9 254 -6 1817 117 11 22 chr3 217035708 217035982 -10488596 + AluSx SINE Alu 1 271 -41 349 70 0 0 chr3 217036379 217036436 -10488142 - Alu SINE Alu -253 49 1 301 339 0 18 chr3 217036498 217036607 -10487971 - L1MC4 LINE L1 -1322 6720 6614 456 94 53 29 chr3 217036651 217036822 -10487756 + (TATAA)n Simple_repeat Simple_repeat 5 179 0 214 22 109 0 chr3 217036825 217036871 -10487707 + (TA)n Simple_repeat Simple_repeat 2 52 0 1182 47 0 0 chr3 217036891 217037041 -10487537 + L1PA10 LINE L1 5993 6142 -26 350 56 130 0 chr3 217037041 217037095 -10487483 + L1PA12 LINE L1 6097 6157 -11 2520 43 20 0 chr3 217037442 217037745 -10486833 + AluY SINE Alu 1 309 -2 573 352 68 39 chr3 217038106 217038723 -10485855 + L1ME LINE L1 4399 4997 -1149 2117 129 39 39 chr3 217038723 217039087 -10485491 + THE1B LTR MaLR 1 364 0 10934 117 15 0 chr3 217039088 217040644 -10483934 + THE1B-int LTR MaLR 2 1580 0 1995 160 30 28 chr3 217040644 217041007 -10483571 + THE1B LTR MaLR 1 364 0 573 352 68 39 chr3 217041007 217041184 -10483394 + L1ME LINE L1 4996 5219 -927 522 255 137 30 chr3 217041189 217041621 -10482957 + L1ME LINE L1 5259 5736 -385 2137 268 44 53 chr3 217041632 217042330 -10482248 + L2 LINE L2 1997 2688 -626 2065 112 20 3 chr3 217042549 217042852 -10481726 - AluSc SINE Alu -1 308 1 294 308 0 13 chr3 217042940 217043018 -10481560 + L2 LINE L2 3190 3266 -6 507 136 259 0 chr3 217043183 217043330 -10481248 - Charlie2a DNA MER1_type -1200 1662 1478 654 290 23 19 chr3 217043478 217043737 -10480841 - Charlie2a DNA MER1_type -2557 305 46 22 35 0 0 chr3 217044051 217044080 -10480498 + AT_rich Low_complexity Low_complexity 1 29 0 310 357 78 13 chr3 217044320 217044474 -10480104 + L2 LINE L2 3109 3272 0 2369 89 0 3 chr3 217044875 217045179 -10479399 + AluSg SINE Alu 1 303 -7 24 0 0 0 chr3 217045227 217045251 -10479327 + AT_rich Low_complexity Low_complexity 1 24 0 200 288 0 0 chr3 217046095 217046161 -10478417 + A-rich Low_complexity Low_complexity 1 66 0 22 56 0 0 chr3 217046441 217046477 -10478101 + AT_rich Low_complexity Low_complexity 1 36 0 475 300 76 54 chr3 217046886 217047252 -10477326 + L1MEd LINE L1 963 1328 -1179 6474 129 30 10 chr3 217047252 217049179 -10475399 + L1MA2 LINE L1 4336 6304 0 2090 124 0 0 chr3 217049223 217049514 -10475064 - AluSx SINE Alu -21 291 1 237 256 132 16 chr3 217049697 217049818 -10474760 + HAL1 LINE L1 1473 1607 -900 393 286 0 10 chr3 217050572 217050670 -10473908 - L1 LINE L1 -1318 4828 4732 438 20 0 0 chr3 217051619 217051670 -10472908 + (CA)n Simple_repeat Simple_repeat 1 51 0 303 113 0 38 chr3 217052592 217052645 -10471933 + MSTC LTR MaLR 1 51 -377 248 98 0 0 chr3 217052688 217052729 -10471849 + L1PA6 LINE L1 6109 6149 -5 286 226 0 16 chr3 217052746 217052808 -10471770 + MSTD LTR MaLR 70 130 -298 749 202 69 6 chr3 217052845 217053018 -10471560 + MSTD LTR MaLR 213 396 0 635 316 31 49 chr3 217053018 217053468 -10471110 - ERVL LTR ERVL -717 4976 4495 302 71 0 0 chr3 217053521 217053563 -10471015 - L1PA16 LINE L1 -19 6147 6106 1233 234 45 25 chr3 217053601 217053960 -10470618 - MLT1A2 LTR MaLR -8 366 1 353 315 0 0 chr3 217053973 217054100 -10470478 - ERVL LTR ERVL -1332 4432 4306 12877 184 22 16 chr3 217054101 217058178 -10466400 - L1PA12 LINE L1 -1605 5979 1567 324 70 0 0 chr3 217058178 217058221 -10466357 + (TG)n Simple_repeat Simple_repeat 2 44 0 12877 184 22 16 chr3 217058221 217059799 -10464779 - L1PA12 LINE L1 -6017 1567 1 349 345 99 6 chr3 217059811 217059982 -10464596 - MIR SINE MIR -59 203 17 231 97 0 0 chr3 217060046 217060077 -10464501 - L1PA12 LINE L1 -6144 1437 1407 207 0 0 0 chr3 217060275 217060298 -10464280 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 452 200 9 0 chr3 217061309 217061414 -10463164 + CT-rich Low_complexity Low_complexity 3 108 0 213 205 0 60 chr3 217061428 217061511 -10463067 + CT-rich Low_complexity Low_complexity 3 80 0 180 307 40 40 chr3 217063039 217063114 -10461464 - L3b LINE CR1 -66 1517 1443 372 378 25 14 chr3 217063324 217063540 -10461038 - MIR SINE MIR -34 228 10 286 365 51 1 chr3 217064354 217064468 -10460110 - MIR SINE MIR -57 151 30 448 287 100 13 chr3 217065648 217065819 -10458759 - MIR SINE MIR -56 206 12 374 301 39 11 chr3 217066404 217066544 -10458034 + MIR SINE MIR 21 164 -62 405 226 183 51 chr3 217067089 217067226 -10457352 + MER5A DNA MER1_type 35 189 0 2055 139 0 19 chr3 217067357 217067666 -10456912 + AluSg SINE Alu 2 304 -6 285 29 0 0 chr3 217069287 217069322 -10455256 + AluS SINE Alu 53 87 -216 1352 152 5 27 chr3 217069987 217070211 -10454367 + AluSx SINE Alu 38 256 -56 1137 245 55 44 chr3 217070460 217070913 -10453665 - L1MC4 LINE L1 -414 7628 7171 550 208 25 199 chr3 217071125 217071607 -10452971 - L1MC4a LINE L1 -901 7141 6659 1284 146 32 8 chr3 217072220 217072661 -10451917 + LTR54 LTR ERV1 1 510 0 370 274 0 0 chr3 217072670 217072765 -10451813 - Charlie7 DNA MER1_type -1901 711 617 2597 161 30 67 chr3 217072831 217073439 -10451139 - MER34C LTR ERV1 0 585 1 2737 3 0 0 chr3 217073524 217073820 -10450758 - AluYa5 SINE Alu -15 296 1 522 212 61 0 chr3 217073840 217074005 -10450573 - MER104 DNA Tc2 -5 175 1 246 325 167 0 chr3 217074052 217074172 -10450406 - Charlie7 DNA MER1_type -2259 353 214 16644 145 44 8 chr3 217074303 217077488 -10447090 + L1PB1 LINE L1 15 3313 -3549 564 15 0 0 chr3 217077505 217077570 -10447008 + (CAATA)n Simple_repeat Simple_repeat 2 66 0 5528 165 18 4 chr3 217077571 217079279 -10445299 + L1PB1 LINE L1 5131 6862 -5 2111 175 15 5 chr3 217079318 217079707 -10444871 - MSTB LTR MaLR -33 393 1 2335 88 0 3 chr3 217079776 217080071 -10444507 + AluY SINE Alu 1 294 -17 3272 159 49 24 chr3 217080273 217080928 -10443650 + LTR51 LTR ERV1 1 671 0 2315 124 19 19 chr3 217080952 217081316 -10443262 - THE1B LTR MaLR 0 364 1 11084 104 23 3 chr3 217081316 217082866 -10441712 - THE1B-int LTR MaLR 0 1580 1 2217 135 19 19 chr3 217082866 217083230 -10441348 - THE1B LTR MaLR 0 364 1 515 241 65 108 chr3 217083253 217083697 -10440881 - HAL1 LINE L1 -206 2301 1877 2262 135 0 6 chr3 217083714 217084078 -10440500 - L1PB1 LINE L1 -8 6143 5782 291 54 0 0 chr3 217084084 217084121 -10440457 + (TG)n Simple_repeat Simple_repeat 2 38 0 208 156 0 0 chr3 217084121 217084153 -10440425 + (TA)n Simple_repeat Simple_repeat 2 33 0 3487 160 8 1 chr3 217084153 217085277 -10439301 - L1PB1 LINE L1 -359 5792 4664 8120 78 1 1 chr3 217085279 217086374 -10438204 - HERVL-B3 LTR ERVL -4559 1095 1 253 98 0 131 chr3 217086376 217086416 -10438162 - MLT2B3 LTR ERVL -2 552 508 777 107 0 0 chr3 217086416 217086547 -10438031 + (TA)n Simple_repeat Simple_repeat 2 132 0 253 98 0 131 chr3 217086547 217086567 -10438011 - MLT2B3 LTR ERVL -46 508 399 2481 52 0 10 chr3 217086739 217087045 -10437533 - AluY SINE Alu -8 303 1 303 250 167 17 chr3 217087068 217087188 -10437390 + MIR SINE MIR 124 261 -1 398 321 27 43 chr3 217088198 217088382 -10436196 + MIR3 SINE MIR 23 203 -5 * 449 250 0 0 chr3 217088366 217088470 -10436108 - L2 LINE L2 -3 3310 3207 1982 153 3 0 chr3 217088924 217089218 -10435360 - AluSx SINE Alu -17 295 1 249 336 66 8 chr3 217089280 217089402 -10435176 + L2 LINE L2 3136 3264 -8 326 342 0 0 chr3 217089521 217089597 -10434981 + MER5A DNA MER1_type 14 89 -100 1310 109 8 71 chr3 217089599 217089784 -10434794 - AluJo SINE Alu -4 308 140 2240 120 0 0 chr3 217089784 217090085 -10434493 - AluSp SINE Alu -12 301 1 1310 109 8 71 chr3 217090085 217090137 -10434441 - AluJo SINE Alu -172 140 86 194 184 53 0 chr3 217090161 217090199 -10434379 + MER5A DNA MER1_type 148 187 -2 273 333 31 124 chr3 217090631 217091147 -10433431 - L2 LINE L2 0 3272 2805 243 306 207 26 chr3 217091237 217091469 -10433109 - L2 LINE L2 -560 2754 2481 1981 123 13 10 chr3 217091665 217091965 -10432613 + AluSx SINE Alu 1 301 -11 357 75 0 0 chr3 217091966 217092019 -10432559 + (CA)n Simple_repeat Simple_repeat 1 53 0 1546 199 32 45 chr3 217092442 217092754 -10431824 - AluJo SINE Alu -4 308 1 260 306 12 12 chr3 217093033 217093118 -10431460 + MIR SINE MIR 51 135 -127 238 139 0 0 chr3 217094124 217094160 -10430418 + MER20 DNA MER1_type 178 213 -6 1807 212 54 22 chr3 217094386 217094686 -10429892 + Charlie1b DNA MER1_type 1 325 -2436 1992 143 10 3 chr3 217094686 217094979 -10429599 + AluSx SINE Alu 1 295 -17 1807 212 54 22 chr3 217094979 217095179 -10429399 + Charlie1b DNA MER1_type 325 517 -6 998 239 114 57 chr3 217095272 217095694 -10428884 + MLT2B1 LTR ERVL 1 446 -74 307 227 114 0 chr3 217095710 217095798 -10428780 - MER5A DNA MER1_type -88 101 4 324 319 163 7 chr3 217095800 217095941 -10428637 + MER5A DNA MER1_type 27 189 0 418 309 57 51 chr3 217095951 217096126 -10428452 + MER5B DNA MER1_type 3 178 0 2294 104 0 3 chr3 217096357 217096665 -10427913 - AluSp SINE Alu -6 307 1 448 237 42 34 chr3 217096788 217096906 -10427672 - MIR3 SINE MIR -22 186 68 2334 182 100 4 chr3 217098012 217098513 -10426065 + MER44D DNA MER2_type 1 604 -1 392 293 52 37 chr3 217098720 217098911 -10425667 - MIR SINE MIR -49 213 20 326 320 87 27 chr3 217098937 217099156 -10425422 + MIR SINE MIR 21 252 -10 1233 131 0 0 chr3 217099928 217100103 -10424475 - AluSq SINE Alu -10 303 129 2349 99 0 0 chr3 217100107 217100409 -10424169 - AluY SINE Alu -9 302 1 817 292 106 48 chr3 217100411 217100866 -10423712 + L2 LINE L2 2833 3313 0 518 305 192 18 chr3 217100884 217101222 -10423356 + L2 LINE L2 2247 2643 -671 355 200 0 0 chr3 217101227 217101297 -10423281 + MIR SINE MIR 62 131 -131 1196 196 67 74 chr3 217101393 217101811 -10422767 + MLT1C LTR MaLR 53 467 0 24 32 0 0 chr3 217101874 217101905 -10422673 + AT_rich Low_complexity Low_complexity 1 31 0 234 356 122 54 chr3 217101932 217102472 -10422106 + L2 LINE L2 2697 3272 0 300 336 13 54 chr3 217102586 217102735 -10421843 - MIR3 SINE MIR -15 193 51 22 35 0 0 chr3 217103780 217103809 -10420769 + AT_rich Low_complexity Low_complexity 1 29 0 30 45 0 0 chr3 217104231 217104275 -10420303 + AT_rich Low_complexity Low_complexity 1 44 0 3829 213 22 20 chr3 217104277 217105804 -10418774 - L1MA9 LINE L1 -38 6274 4744 958 194 14 0 chr3 217105798 217106015 -10418563 - L1MA9 LINE L1 -1647 4499 4280 * 910 151 66 0 chr3 217106015 217106167 -10418411 + THE1B LTR MaLR 203 364 0 11731 94 6 6 chr3 217106167 217107746 -10416832 + THE1B-int LTR MaLR 1 1580 0 2038 164 22 8 chr3 217107746 217108105 -10416473 + THE1B LTR MaLR 1 364 0 1809 210 12 2 chr3 217108105 217108510 -10416068 - L1MA9 LINE L1 -2050 4096 3688 280 384 23 6 chr3 217108776 217108948 -10415630 + L2 LINE L2 2560 2734 -580 830 293 64 40 chr3 217109102 217109522 -10415056 - LTR16A1 LTR ERVL -17 440 11 433 369 34 9 chr3 217111139 217111581 -10412997 - HERV16 LTR ERVL -1908 3856 3404 687 299 72 20 chr3 217111612 217112079 -10412499 - HERV16 LTR ERVL -1908 3088 2781 397 219 0 0 chr3 217112558 217112640 -10411938 - LTR16A1 LTR ERVL -5 452 371 207 0 0 0 chr3 217112641 217112664 -10411914 + (T)n Simple_repeat Simple_repeat 1 23 0 1673 153 3 36 chr3 217112813 217113120 -10411458 - AluSx SINE Alu -13 299 3 217 86 0 103 chr3 217114305 217114363 -10410215 + (TATAA)n Simple_repeat Simple_repeat 3 54 0 230 228 0 0 chr3 217115217 217115274 -10409304 - MLT2B1 LTR ERVL 0 520 464 328 299 0 0 chr3 217115277 217115364 -10409214 + L1MC4 LINE L1 6614 6700 -1342 316 69 0 35 chr3 217115399 217115457 -10409121 + (TA)n Simple_repeat Simple_repeat 2 57 0 2653 102 23 5 chr3 217115457 217115850 -10408728 - MLT2A1 LTR ERVL -44 400 1 602 183 6 59 chr3 217115850 217115914 -10408664 - MER53 DNA DNA -26 163 97 2107 164 25 55 chr3 217115914 217115968 -10408610 + MSTB LTR MaLR 2 56 -370 1857 146 3 47 chr3 217115968 217116290 -10408288 + AluSx SINE Alu 3 310 -2 2107 164 25 55 chr3 217116290 217116673 -10407905 + MSTB LTR MaLR 56 426 0 602 183 6 59 chr3 217116673 217116777 -10407801 - MER53 DNA DNA -92 97 4 748 166 50 7 chr3 217116792 217116931 -10407647 - MER20 DNA MER1_type -74 145 1 688 204 15 7 chr3 217116931 217117068 -10407510 + MER5A DNA MER1_type 47 184 -5 549 239 126 6 chr3 217117463 217117622 -10406956 + MER5B DNA MER1_type 1 178 0 409 248 46 111 chr3 217118017 217118412 -10406166 + L1MC5 LINE L1 7321 7689 -272 22 0 0 0 chr3 217118420 217118442 -10406136 + AT_rich Low_complexity Low_complexity 1 22 0 389 221 177 0 chr3 217118827 217118940 -10405638 - MIR SINE MIR -110 152 20 1194 133 15 20 chr3 217119194 217119397 -10405181 - L1PB2 LINE L1 -4 6147 5946 2335 95 3 0 chr3 217119574 217119878 -10404700 + AluSg SINE Alu 1 305 -5 191 250 19 19 chr3 217119944 217119996 -10404582 - L2 LINE L2 -2 3270 3219 545 269 80 93 chr3 217120010 217120334 -10404244 - L2 LINE L2 -12 3301 2982 640 285 101 19 chr3 217120349 217120556 -10404022 - MIR SINE MIR -19 243 20 1291 305 135 25 chr3 217120583 217121196 -10403382 - L2 LINE L2 -337 2977 2297 329 253 46 0 chr3 217121398 217121485 -10403093 + Charlie8 DNA MER1_type 93 183 -2234 210 286 41 20 chr3 217121578 217121676 -10402902 + MIR SINE MIR 48 147 -115 2218 102 7 16 chr3 217121973 217122277 -10402301 - AluSp SINE Alu -12 301 1 602 267 30 0 chr3 217122432 217122567 -10402011 - MIR SINE MIR -54 208 70 541 345 5 11 chr3 217123048 217123239 -10401339 + MIR3 SINE MIR 16 205 -3 1326 224 13 36 chr3 217124429 217124737 -10399841 - AluJo SINE Alu -11 301 1 218 260 0 0 chr3 217124929 217124979 -10399599 + MIR SINE MIR 105 154 -108 1590 167 14 100 chr3 217124990 217125410 -10399168 - MLT1B LTR MaLR -6 384 1 208 325 88 18 chr3 217127127 217127241 -10397337 + MIR3 SINE MIR 46 167 -41 404 306 77 24 chr3 217128252 217128422 -10396156 - MER5A DNA MER1_type -1 188 10 2310 123 6 11 chr3 217128422 217128780 -10395798 + L1PB2 LINE L1 5796 6151 0 422 114 14 0 chr3 217128793 217128863 -10395715 + (GGAA)n Simple_repeat Simple_repeat 2 72 0 506 143 66 0 chr3 217129388 217129479 -10395099 - LTR54 LTR ERV1 -413 97 1 263 291 82 18 chr3 217129481 217129591 -10394987 + MIR SINE MIR 124 240 -22 25 31 0 0 chr3 217129680 217129712 -10394866 + AT_rich Low_complexity Low_complexity 1 32 0 400 368 53 16 chr3 217131417 217131795 -10392783 + L2 LINE L2 1927 2318 -996 2029 130 3 0 chr3 217132097 217132430 -10392148 + AluSq SINE Alu 1 334 0 219 372 81 27 chr3 217132597 217132745 -10391833 + L2 LINE L2 3109 3264 -8 1033 254 53 62 chr3 217133073 217133522 -10391056 - L1MCb LINE L1 -5596 449 5 7323 35 10 6 chr3 217134275 217135257 -10389321 + L1PA4 LINE L1 5170 6155 0 3832 69 4 2 chr3 217135337 217135842 -10388736 - L1PA8 LINE L1 -3 6169 5664 1386 230 40 42 chr3 217135847 217136277 -10388301 - MER39 LTR ERV1 -19 688 260 268 313 46 0 chr3 217136940 217137135 -10387443 - L1ME3A LINE L1 -221 5949 5746 2496 198 42 4 chr3 217137233 217137758 -10386820 - MER89 LTR ERV1 -14 545 1 335 313 0 12 chr3 217138123 217138206 -10386372 - MIR SINE MIR -162 100 19 2151 110 3 0 chr3 217138285 217138577 -10386001 - AluSp SINE Alu -20 293 1 21 36 0 0 chr3 217139050 217139078 -10385500 + AT_rich Low_complexity Low_complexity 1 28 0 208 409 9 9 chr3 217140006 217140121 -10384457 + MIR SINE MIR 28 142 -66 464 184 23 0 chr3 217140326 217140413 -10384165 - L1PB4 LINE L1 -228 5928 5840 1432 249 25 6 chr3 217140828 217141182 -10383396 - MLT1A1 LTR MaLR -1 364 4 27 0 0 0 chr3 217141669 217141696 -10382882 + AT_rich Low_complexity Low_complexity 1 27 0 260 235 25 25 chr3 217141709 217141814 -10382764 + CT-rich Low_complexity Low_complexity 1 105 0 448 366 98 28 chr3 217141814 217142123 -10382455 - L2 LINE L2 -1 3312 3026 5645 119 41 18 chr3 217142123 217143493 -10381085 - L1PA13 LINE L1 0 6163 4781 448 366 98 28 chr3 217143493 217143781 -10380797 - L2 LINE L2 -287 3026 2667 614 274 153 43 chr3 217143790 217144253 -10380325 - LTR33A LTR ERVL -7 516 3 232 338 45 23 chr3 217144316 217144449 -10380129 - L2 LINE L2 -712 2602 2467 426 20 0 0 chr3 217144822 217144873 -10379705 + (TG)n Simple_repeat Simple_repeat 1 51 0 526 221 371 0 chr3 217146828 217146968 -10377610 + Tigger5 DNA MER2_type 1 192 -2131 416 210 0 12 chr3 217146967 217147048 -10377530 + Tigger5 DNA MER2_type 2244 2323 0 * 21 36 0 0 chr3 217147339 217147367 -10377211 + AT_rich Low_complexity Low_complexity 1 28 0 6089 226 49 33 chr3 217147976 217149713 -10374865 - L1 LINE L1 -2463 5102 3396 2093 140 0 3 chr3 217149713 217150013 -10374565 + AluSq SINE Alu 1 299 -14 6089 226 49 33 chr3 217150013 217151143 -10373435 - L1 LINE L1 -4169 3396 2179 9216 27 5 3 chr3 217151143 217153016 -10371562 - L1PA3 LINE L1 0 6155 4282 6089 226 49 33 chr3 217153016 217153304 -10371274 - L1 LINE L1 -5386 2179 1897 702 357 49 27 chr3 217153792 217154201 -10370377 - L1 LINE L1 -5537 1949 1532 29 0 0 0 chr3 217154445 217154474 -10370104 + AT_rich Low_complexity Low_complexity 1 29 0 247 299 68 17 chr3 217154499 217154616 -10369962 - MIR SINE MIR -75 187 65 1004 302 111 18 chr3 217155546 217155987 -10368591 - L2 LINE L2 -18 3295 2814 1820 175 47 19 chr3 217155987 217156352 -10368226 - THE1C LTR MaLR 0 375 1 8312 134 92 8 chr3 217156385 217156446 -10368132 - THE1C-int LTR MaLR -107 1473 1419 207 0 0 0 chr3 217156446 217156469 -10368109 + (TAA)n Simple_repeat Simple_repeat 2 24 0 8312 134 92 8 chr3 217156469 217157766 -10366812 - THE1C-int LTR MaLR -161 1419 1 1667 159 85 20 chr3 217157766 217158118 -10366460 - THE1C LTR MaLR 0 375 1 940 294 34 103 chr3 217158129 217158751 -10365827 - L2 LINE L2 -504 2810 2232 31 44 0 0 chr3 217159174 217159219 -10365359 + AT_rich Low_complexity Low_complexity 1 45 0 22 80 0 0 chr3 217159365 217159415 -10365163 + AT_rich Low_complexity Low_complexity 1 50 0 210 281 31 47 chr3 217159837 217159901 -10364677 - L2 LINE L2 0 3313 3251 252 400 69 0 chr3 217160347 217160477 -10364101 + MIR3 SINE MIR 15 153 -55 399 319 21 11 chr3 217160481 217160672 -10363906 - MLT1K LTR MaLR 0 588 396 607 334 167 39 chr3 217160833 217161284 -10363294 - L2 LINE L2 0 3313 2761 2558 40 0 3 chr3 217161284 217161585 -10362993 - AluY SINE Alu -11 300 1 607 334 167 39 chr3 217161585 217161702 -10362876 - L2 LINE L2 -552 2761 2660 185 159 23 0 chr3 217162148 217162192 -10362386 + (TA)n Simple_repeat Simple_repeat 1 45 0 507 138 37 20 chr3 217162220 217162511 -10362067 + (TA)n Simple_repeat Simple_repeat 1 295 0 252 0 0 0 chr3 217163085 217163113 -10361465 + (CA)n Simple_repeat Simple_repeat 2 29 0 2009 82 67 0 chr3 217163191 217163461 -10361117 - AluSp SINE Alu -12 301 14 272 290 88 46 chr3 217163469 217163707 -10360871 - L1ME LINE L1 -284 5886 5639 23 86 0 0 chr3 217163876 217163934 -10360644 + AT_rich Low_complexity Low_complexity 1 58 0 812 282 92 52 chr3 217163936 217164514 -10360064 - L1ME LINE L1 -748 5398 4798 225 343 69 60 chr3 217164596 217164812 -10359766 + MLT1J LTR MaLR 227 444 -67 484 354 29 18 chr3 217164912 217165186 -10359392 + LTR16B LTR ERVL 51 327 -137 670 278 52 10 chr3 217165200 217165394 -10359184 + MER58C DNA MER1_type 13 214 -1 290 291 16 39 chr3 217165405 217165532 -10359046 + LTR16B LTR ERVL 340 463 -1 1826 319 46 40 chr3 217165886 217165950 -10358628 + L2 LINE L2 2286 2348 -965 2199 125 3 0 chr3 217165950 217166255 -10358323 + AluSx SINE Alu 1 306 -6 1826 319 46 40 chr3 217166255 217167143 -10357435 + L2 LINE L2 2348 3243 -70 1669 175 3 7 chr3 217167232 217167517 -10357061 + AluJb SINE Alu 7 290 -22 180 0 0 0 chr3 217167517 217167537 -10357041 + (TA)n Simple_repeat Simple_repeat 2 21 0 26 0 0 0 chr3 217167757 217167783 -10356795 + AT_rich Low_complexity Low_complexity 1 26 0 457 264 92 12 chr3 217168777 217168940 -10355638 - MER5B DNA MER1_type -2 176 1 198 330 150 10 chr3 217168945 217169045 -10355533 - MIR3 SINE MIR -53 155 42 21 0 0 0 chr3 217169161 217169182 -10355396 + AT_rich Low_complexity Low_complexity 1 21 0 194 350 0 0 chr3 217170717 217170777 -10353801 - L3 LINE CR1 -3 1574 1515 351 298 75 40 chr3 217171230 217171436 -10353142 - MIR SINE MIR -57 151 4 315 335 45 7 chr3 217171811 217171966 -10352612 - MIR SINE MIR -64 198 38 264 335 78 30 chr3 217173761 217173991 -10350587 + MIR SINE MIR 1 241 -21 217 86 0 103 chr3 217176344 217176402 -10348176 + (TATAA)n Simple_repeat Simple_repeat 3 54 0 309 220 34 59 chr3 217176444 217176562 -10348016 + L1MC3 LINE L1 6538 6652 -1133 1884 121 76 0 chr3 217176677 217176967 -10347611 - AluSx SINE Alu 0 312 1 29 60 0 0 chr3 217176978 217177028 -10347550 + AT_rich Low_complexity Low_complexity 1 50 0 1886 136 3 32 chr3 217179132 217179440 -10345138 - AluSx SINE Alu -13 299 1 425 327 9 0 chr3 217179992 217180105 -10344473 - MER81 DNA DNA 0 114 1 230 386 15 23 chr3 217180132 217180264 -10344314 - L2 LINE L2 -470 2844 2714 191 276 13 40 chr3 217180361 217180437 -10344141 - L3b LINE CR1 -398 1185 1112 1113 241 8 4 chr3 217182384 217182621 -10341957 + MER8 DNA MER2_type 2 239 0 213 345 55 69 chr3 217183256 217183401 -10341177 - MIR3 SINE MIR -54 154 12 504 298 77 22 chr3 217183694 217183875 -10340703 - L3 LINE CR1 -5 1572 1382 360 309 149 63 chr3 217186934 217187329 -10337249 - L1M2 LINE L1 -5827 1022 594 273 75 0 0 chr3 217187740 217187780 -10336798 + (CA)n Simple_repeat Simple_repeat 2 41 0 2221 92 0 0 chr3 217188937 217189254 -10335324 + AluSx SINE Alu 1 317 0 301 294 128 9 chr3 217189719 217189828 -10334750 + MIR3 SINE MIR 81 202 -6 344 328 52 0 chr3 217189907 217190023 -10334555 - MIR SINE MIR -133 129 8 480 305 183 5 chr3 217190764 217190977 -10333601 + MIR SINE MIR 12 262 0 185 94 31 0 chr3 217191783 217191815 -10332763 + GA-rich Low_complexity Low_complexity 1 33 0 1376 216 84 18 chr3 217191815 217192158 -10332420 - MLT2D LTR ERVL -48 366 1 557 296 74 0 chr3 217192185 217192361 -10332217 - MIR SINE MIR -46 216 28 1513 207 11 4 chr3 217192739 217193014 -10331564 + AluJb SINE Alu 4 280 -32 460 256 41 58 chr3 217193107 217193279 -10331299 + MIR SINE MIR 86 254 -8 21 57 0 0 chr3 217193411 217193446 -10331132 + AT_rich Low_complexity Low_complexity 1 35 0 410 322 35 17 chr3 217193453 217193627 -10330951 + Charlie8 DNA MER1_type 6 182 -2235 251 196 0 0 chr3 217193667 217193713 -10330865 + Charlie8 DNA MER1_type 1357 1402 -1015 264 294 60 60 chr3 217194440 217194624 -10329954 - L2 LINE L2 -534 2780 2597 755 305 24 16 chr3 217195121 217195370 -10329208 + MIR SINE MIR 2 252 -10 542 161 270 0 chr3 217196195 217196332 -10328246 - MER3 DNA MER1_type 0 209 36 1498 208 87 46 chr3 217196456 217196937 -10327641 - MLT1D LTR MaLR -2 503 3 23 33 0 0 chr3 217197058 217197088 -10327490 + AT_rich Low_complexity Low_complexity 1 30 0 207 366 137 13 chr3 217197205 217197358 -10327220 + MIR3 SINE MIR 22 193 -15 493 28 28 0 chr3 217198262 217198333 -10326245 + (TCTA)n Simple_repeat Simple_repeat 4 76 0 403 306 81 23 chr3 217199220 217199393 -10325185 + LTR33 LTR ERVL 5 187 -334 324 330 36 76 chr3 217199397 217199700 -10324878 + LTR16A1 LTR ERVL 5 295 -162 304 58 19 19 chr3 217199705 217199757 -10324821 + (TTTTC)n Simple_repeat Simple_repeat 2 53 0 2208 103 3 25 chr3 217199760 217200080 -10324498 - AluSq SINE Alu 0 313 1 559 250 6 64 chr3 217200080 217200169 -10324409 + LTR16A1 LTR ERVL 290 366 -91 2257 97 10 0 chr3 217200169 217200468 -10324110 + AluSc SINE Alu 1 302 -7 559 250 6 64 chr3 217200468 217200550 -10324028 + LTR16A1 LTR ERVL 366 451 -6 713 314 64 21 chr3 217201030 217201498 -10323080 + HERV16 LTR ERVL 2781 3277 -1908 570 360 36 11 chr3 217201529 217201971 -10322607 + HERV16 LTR ERVL 3404 3856 -1908 625 372 54 28 chr3 217202197 217202998 -10321580 + HERV16 LTR ERVL 4098 4919 -566 964 293 64 40 chr3 217203588 217204008 -10320570 + LTR16A1 LTR ERVL 11 440 -17 225 239 0 0 chr3 217204104 217204150 -10320428 + LTR33 LTR ERVL 473 518 -3 284 384 23 6 chr3 217204162 217204334 -10320244 - L2 LINE L2 -580 2734 2560 1931 210 12 2 chr3 217204600 217205005 -10319573 + L1MA9 LINE L1 3688 4096 -2050 2039 164 22 8 chr3 217205005 217205364 -10319214 - THE1B LTR MaLR 0 364 1 11669 94 6 6 chr3 217205364 217206943 -10317635 - THE1B-int LTR MaLR 0 1580 1 965 151 66 0 chr3 217206943 217207095 -10317483 - THE1B LTR MaLR 0 364 203 1021 189 14 0 chr3 217207095 217207312 -10317266 + L1MA9 LINE L1 4280 4499 -1647 * 4124 216 20 18 chr3 217207306 217208833 -10315745 + L1MA9 LINE L1 4744 6274 -38 30 45 0 0 chr3 217208835 217208879 -10315699 + AT_rich Low_complexity Low_complexity 1 44 0 22 35 0 0 chr3 217209301 217209330 -10315248 + AT_rich Low_complexity Low_complexity 1 29 0 299 336 13 54 chr3 217210375 217210524 -10314054 + MIR3 SINE MIR 51 193 -15 227 356 122 54 chr3 217210638 217211178 -10313400 - L2 LINE L2 0 3272 2697 24 32 0 0 chr3 217211205 217211236 -10313342 + AT_rich Low_complexity Low_complexity 1 31 0 1422 195 66 70 chr3 217211298 217211724 -10312854 - MLT1C LTR MaLR 0 467 44 353 200 0 0 chr3 217211811 217211881 -10312697 - MIR SINE MIR -131 131 62 516 305 192 18 chr3 217211886 217212224 -10312354 - L2 LINE L2 -671 2643 2247 810 292 106 48 chr3 217212242 217212697 -10311881 - L2 LINE L2 0 3313 2833 2126 101 3 61 chr3 217212699 217213027 -10311551 + AluSc SINE Alu 1 309 0 302 0 26 0 chr3 217213073 217213111 -10311467 + (TG)n Simple_repeat Simple_repeat 2 40 0 3092 83 12 0 chr3 217213405 217213824 -10310754 - L1PA13 LINE L1 -5 6158 5735 1919 126 160 16 chr3 217213868 217214242 -10310336 + MSTA LTR MaLR 1 428 0 573 311 40 59 chr3 217214284 217214605 -10309973 + MLT1H LTR MaLR 40 354 -195 198 0 0 0 chr3 217215082 217215104 -10309474 + (TA)n Simple_repeat Simple_repeat 1 22 0 203 303 26 26 chr3 217215283 217215359 -10309219 + MIR SINE MIR 6 81 -181 742 316 105 26 chr3 217215359 217215660 -10308918 + LTR16B LTR ERVL 1 348 -116 1740 195 57 7 chr3 217215660 217216066 -10308512 + MSTB LTR MaLR 1 426 0 742 316 105 26 chr3 217216066 217216194 -10308384 + LTR16B LTR ERVL 348 464 0 388 269 97 15 chr3 217216195 217216329 -10308249 + MIR SINE MIR 105 249 -13 21 82 0 0 chr3 217216879 217216928 -10307650 + AT_rich Low_complexity Low_complexity 1 49 0 217 171 24 0 chr3 217217034 217217075 -10307503 + L2 LINE L2 3264 3305 -8 213 339 15 0 chr3 217217746 217217811 -10306767 + L2 LINE L2 3246 3311 -2 267 200 18 0 chr3 217217812 217217867 -10306711 + MIR SINE MIR 132 187 -75 298 321 64 14 chr3 217217986 217218126 -10306452 + L2 LINE L2 2612 2758 -556 435 238 115 41 chr3 217218335 217218578 -10306000 - Charlie7 DNA MER1_type -1936 676 416 1166 247 169 34 chr3 217218578 217219023 -10305555 - MLT1D LTR MaLR 0 505 1 439 259 122 0 chr3 217219051 217219198 -10305380 + MLT1E1 LTR MaLR 1 165 -489 234 198 146 52 chr3 217219250 217219346 -10305232 + MLT1K LTR MaLR 160 264 -324 21 36 0 0 chr3 217221575 217221603 -10302975 + AT_rich Low_complexity Low_complexity 1 28 0 26 30 0 0 chr3 217223696 217223729 -10300849 + AT_rich Low_complexity Low_complexity 1 33 0 212 382 0 29 chr3 217225159 217225261 -10299317 - L2 LINE L2 -662 2652 2554 626 242 74 65 chr3 217225334 217225752 -10298826 - L1MEc LINE L1 -4139 2257 1836 227 308 15 0 chr3 217225880 217225945 -10298633 - L2 LINE L2 0 3272 3207 3026 181 14 78 chr3 217226024 217226359 -10298219 + LTR8 LTR ERV1 1 263 -428 1512 200 90 110 chr3 217226359 217226984 -10297594 + LTR9 LTR ERV1 1 612 0 3026 181 14 78 chr3 217226984 217227387 -10297191 + LTR8 LTR ERV1 263 691 0 400 227 0 13 chr3 217227480 217227555 -10297023 - Tigger7 DNA MER2_type -631 74 1 225 298 50 17 chr3 217227872 217228053 -10296525 - L1MEc LINE L1 -5073 1145 959 243 308 20 41 chr3 217228134 217228280 -10296298 - L1MEc LINE L1 -5465 931 789 429 70 0 0 chr3 217228296 217228353 -10296225 + (TA)n Simple_repeat Simple_repeat 1 57 0 348 296 84 72 chr3 217228545 217228974 -10295604 - HERVL LTR ERVL -1698 3956 3523 682 309 107 35 chr3 217229093 217229670 -10294908 - HERVL LTR ERVL -2009 3476 2818 375 278 122 0 chr3 217229692 217229807 -10294771 - HERVL LTR ERVL -3208 1788 1660 1533 345 50 25 chr3 217229931 217230812 -10293766 - HERVL LTR ERVL -3549 1447 545 681 283 30 21 chr3 217230978 217231211 -10293367 - HERVL LTR ERVL -4759 237 3 950 323 62 10 chr3 217231227 217231627 -10292951 - LTR16A LTR ERVL -14 436 16 260 319 55 57 chr3 217232660 217232787 -10291791 + MLT1K LTR MaLR 15 141 -447 1078 215 182 62 chr3 217232787 217233271 -10291307 + MLT1F LTR MaLR 1 542 0 260 319 55 57 chr3 217233271 217233516 -10291062 + MLT1K LTR MaLR 141 409 -179 194 420 9 9 chr3 217234790 217234902 -10289676 + MIR3 SINE MIR 2 113 -95 215 372 71 0 chr3 217235230 217235343 -10289235 + MER91C DNA MER1_type 2 122 -18 2869 87 36 5 chr3 217235377 217235769 -10288809 + MLT2A1 LTR ERVL 1 404 -40 221 172 16 0 chr3 217235769 217235833 -10288745 + (TA)n Simple_repeat Simple_repeat 2 66 0 234 83 0 0 chr3 217235841 217235877 -10288701 + MLT2A1 LTR ERVL 399 434 -19 628 154 17 8 chr3 217235901 217236018 -10288560 + MLT2A1 LTR ERVL 327 444 0 360 277 39 15 chr3 217236333 217236463 -10288115 + L2 LINE L2 3172 3304 -9 1119 250 7 10 chr3 217237099 217237395 -10287183 + AluJb SINE Alu 2 296 -6 396 0 0 0 chr3 217239007 217239051 -10285527 + (TG)n Simple_repeat Simple_repeat 1 44 0 228 231 15 31 chr3 217241630 217241695 -10282883 - MER5B DNA MER1_type -111 67 4 222 37 0 0 chr3 217242236 217242263 -10282315 + (CAAAA)n Simple_repeat Simple_repeat 2 28 0 289 299 110 31 chr3 217242545 217242672 -10281906 + MIR3 SINE MIR 52 188 -20 439 303 25 45 chr3 217242729 217242927 -10281651 + MIR SINE MIR 5 198 -64 432 289 70 0 chr3 217243544 217243700 -10280878 + MIR SINE MIR 47 213 -49 279 250 0 0 chr3 217244162 217244214 -10280364 + L2 LINE L2 3186 3237 -35 189 0 0 0 chr3 217244311 217244332 -10280246 + (CAAA)n Simple_repeat Simple_repeat 3 23 0 400 31 0 47 chr3 217244689 217244753 -10279825 + (TCTA)n Simple_repeat Simple_repeat 1 61 0 909 64 0 38 chr3 217244854 217245011 -10279567 + (TTCC)n Simple_repeat Simple_repeat 2 152 0 779 133 0 30 chr3 217245285 217245420 -10279158 + L1P LINE L1 5122 5252 -894 760 141 0 0 chr3 217245422 217245543 -10279035 + AluSp/q SINE Alu 191 311 -2 711 306 96 49 chr3 217247224 217247691 -10276887 - L3 LINE CR1 -37 1540 1052 195 42 0 0 chr3 217247904 217247928 -10276650 + (CAAA)n Simple_repeat Simple_repeat 2 25 0 210 270 0 0 chr3 217248507 217248581 -10275997 + (CATA)n Simple_repeat Simple_repeat 2 75 0 495 335 73 9 chr3 217248615 217248848 -10275730 - MIR SINE MIR -1 261 14 336 286 77 0 chr3 217249491 217249582 -10274996 - L2 LINE L2 -17 3255 3158 375 357 39 39 chr3 217250577 217250759 -10273819 + MER5A DNA MER1_type 8 189 0 453 242 0 0 chr3 217251101 217251192 -10273386 - Tigger7 DNA MER2_type 0 2587 2497 * 1302 209 46 7 chr3 217251181 217251463 -10273115 - Tigger7 DNA MER2_type -440 293 1 238 304 0 0 chr3 217251763 217251832 -10272746 + CT-rich Low_complexity Low_complexity 1 69 0 221 319 137 26 chr3 217252181 217252407 -10272171 - MIR SINE MIR -10 252 2 358 226 59 20 chr3 217253299 217253401 -10271177 - MIR SINE MIR -37 225 120 22 56 0 0 chr3 217254577 217254613 -10269965 + AT_rich Low_complexity Low_complexity 1 36 0 2062 108 4 0 chr3 217254992 217255294 -10269284 + AluSc SINE Alu 1 303 0 1463 217 0 3 chr3 217255521 217255816 -10268762 - AluJo SINE Alu -10 302 9 243 323 43 37 chr3 217256251 217256412 -10268166 - L2 LINE L2 -213 3059 2898 258 256 71 119 chr3 217256627 217256795 -10267783 + MIR3 SINE MIR 22 181 -27 186 256 18 42 chr3 217256974 217257142 -10267436 + CT-rich Low_complexity Low_complexity 4 167 0 503 378 69 14 chr3 217257150 217257499 -10267079 - L2 LINE L2 -6 3266 2899 384 352 52 46 chr3 217257638 217257945 -10266633 - L2 LINE L2 -602 2712 2404 529 333 24 9 chr3 217258110 217258323 -10266255 + MIR SINE MIR 47 262 0 2183 115 0 7 chr3 217258485 217258790 -10265788 - AluSx SINE Alu -9 303 1 197 222 0 0 chr3 217259062 217259098 -10265480 - L2 LINE L2 -15 3298 3263 30 59 0 0 chr3 217259194 217259245 -10265333 + AT_rich Low_complexity Low_complexity 1 51 0 255 31 0 0 chr3 217260619 217260651 -10263927 + (TAGA)n Simple_repeat Simple_repeat 1 32 0 196 243 0 0 chr3 217261234 217261271 -10263307 - L2 LINE L2 -10 3303 3267 341 296 16 72 chr3 217261278 217261403 -10263175 + L2 LINE L2 3153 3270 -2 599 322 39 12 chr3 217261638 217261896 -10262682 - MER102b DNA MER1_type 0 341 77 1121 244 109 30 chr3 217262938 217263340 -10261238 - MLT1C LTR MaLR 0 467 34 358 205 145 51 chr3 217263482 217263599 -10260979 - MIR SINE MIR -62 200 73 23 54 0 0 chr3 217263609 217263646 -10260932 + AT_rich Low_complexity Low_complexity 1 37 0 2130 71 10 27 chr3 217263959 217264255 -10260323 + AluSp SINE Alu 1 291 -22 3462 140 53 21 chr3 217264314 217264487 -10260091 - L1MA5A LINE L1 -38 6259 6093 2051 129 3 59 chr3 217264487 217264844 -10259734 + MER1B DNA MER1_type 1 337 0 3462 140 53 21 chr3 217264844 217264973 -10259605 - L1MA5A LINE L1 -204 6093 5970 2128 95 20 0 chr3 217264973 217265268 -10259310 - AluSc SINE Alu -8 301 1 3462 140 53 21 chr3 217265268 217265587 -10258991 - L1MA5A LINE L1 -327 5970 5617 446 197 129 30 chr3 217265611 217265756 -10258822 + MIR SINE MIR 13 177 -31 25 65 0 0 chr3 217266561 217266607 -10257971 + AT_rich Low_complexity Low_complexity 1 46 0 21 0 0 0 chr3 217266688 217266709 -10257869 + AT_rich Low_complexity Low_complexity 1 21 0 258 308 43 51 chr3 217267375 217267492 -10257086 + L2 LINE L2 3156 3271 -1 212 246 0 0 chr3 217267618 217267675 -10256903 + GA-rich Low_complexity Low_complexity 2 58 0 1982 145 0 13 chr3 217267783 217268094 -10256484 + AluSx SINE Alu 1 307 -5 25 31 0 0 chr3 217268654 217268686 -10255892 + AT_rich Low_complexity Low_complexity 1 32 0 316 264 22 0 chr3 217268705 217268796 -10255782 - L1ME4a LINE L1 -70 6051 5959 38 61 0 0 chr3 217269061 217269127 -10255451 + AT_rich Low_complexity Low_complexity 1 66 0 2052 118 20 3 chr3 217269885 217270190 -10254388 + AluSx SINE Alu 1 310 -2 231 331 60 78 chr3 217270380 217270546 -10254032 - MIR SINE MIR -32 230 68 2434 63 3 0 chr3 217271477 217271777 -10252801 - AluY SINE Alu -10 301 1 21 0 0 0 chr3 217271898 217271919 -10252659 + AT_rich Low_complexity Low_complexity 1 21 0 309 205 39 26 chr3 217273508 217273586 -10250992 - L1MC4 LINE L1 -1350 6692 6614 249 253 60 0 chr3 217273634 217273717 -10250861 + L1MC4 LINE L1 6615 6702 -1340 288 310 0 0 chr3 217273903 217274019 -10250559 + (TA)n Simple_repeat Simple_repeat 2 117 0 227 279 0 35 chr3 217274021 217274107 -10250471 - L1MC4 LINE L1 -1339 6703 6621 200 312 32 0 chr3 217274109 217274263 -10250315 + (TA)n Simple_repeat Simple_repeat 1 159 0 199 333 13 13 chr3 217275604 217275682 -10248896 + L2 LINE L2 3195 3272 0 2252 78 3 0 chr3 217275718 217276002 -10248576 + AluSc SINE Alu 1 285 -24 189 0 0 0 chr3 217276005 217276026 -10248552 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 345 282 161 31 chr3 217277591 217277882 -10246696 - L1MC5 LINE L1 -322 7639 7311 287 160 43 0 chr3 217278030 217278124 -10246454 + (TA)n Simple_repeat Simple_repeat 1 98 0 454 118 0 15 chr3 217278160 217278228 -10246350 - THE1-int LTR MaLR -448 1132 1066 376 314 51 17 chr3 217278302 217278604 -10245974 - L1MC4 LINE L1 -740 7302 6993 379 200 0 0 chr3 217278613 217278683 -10245895 + MER94 DNA DNA 11 80 -54 391 258 45 2 chr3 217278770 217278907 -10245671 - L1MC4 LINE L1 -812 6973 6870 407 321 19 6 chr3 217279118 217279280 -10245298 - MER52A LTR ERV1 0 1755 1592 1040 262 33 72 chr3 217279290 217279926 -10244652 - MER52A LTR ERV1 -50 970 275 1145 248 58 25 chr3 217280002 217280361 -10244217 - L1ME3A LINE L1 -185 5985 5615 1580 150 63 79 chr3 217280362 217280743 -10243835 - THE1C LTR MaLR 0 375 1 9506 133 47 8 chr3 217280743 217282264 -10242314 - THE1C-int LTR MaLR 0 1580 1 1702 141 50 81 chr3 217282267 217282649 -10241929 - THE1C LTR MaLR -3 372 3 818 283 33 29 chr3 217282652 217283251 -10241327 - L1ME3A LINE L1 -555 5615 5014 532 152 88 24 chr3 217283274 217283399 -10241179 - L1ME3A LINE L1 -11 6159 6027 31 0 0 0 chr3 217283562 217283593 -10240985 + AT_rich Low_complexity Low_complexity 1 31 0 2139 103 3 0 chr3 217283594 217283876 -10240702 - AluSc SINE Alu -26 283 1 240 35 0 0 chr3 217284010 217284039 -10240539 + (CA)n Simple_repeat Simple_repeat 2 30 0 21 36 0 0 chr3 217285041 217285069 -10239509 + AT_rich Low_complexity Low_complexity 1 28 0 1517 162 19 35 chr3 217285128 217285280 -10239298 + L1MA8 LINE L1 5786 5939 -352 1920 123 0 0 chr3 217285280 217285548 -10239030 + AluSp SINE Alu 34 301 -12 1517 162 19 35 chr3 217285548 217285710 -10238868 + L1MA8 LINE L1 5939 6095 -196 531 316 43 66 chr3 217285744 217286231 -10238347 - L1ME LINE L1 -302 5819 5344 232 318 0 0 chr3 217286307 217286370 -10238208 - MER113 DNA MER1_type? -5 516 454 321 232 113 60 chr3 217286792 217286943 -10237635 - L1MC5 LINE L1 -187 7774 7616 21 0 0 0 chr3 217287495 217287516 -10237062 + AT_rich Low_complexity Low_complexity 1 21 0 180 111 0 0 chr3 217288634 217288661 -10235917 + (T)n Simple_repeat Simple_repeat 1 27 0 1230 120 173 45 chr3 217289385 217289651 -10234927 + AluSx SINE Alu 1 300 -12 360 333 80 22 chr3 217290058 217290196 -10234382 + MIR3 SINE MIR 2 147 -61 389 20 20 0 chr3 217290209 217290259 -10234319 + (TAGA)n Simple_repeat Simple_repeat 4 54 0 233 310 10 66 chr3 217290498 217290695 -10233883 - HAL1 LINE L1 -1 2506 2321 225 169 28 14 chr3 217290710 217290781 -10233797 + (TTAA)n Simple_repeat Simple_repeat 1 72 0 48 43 0 0 chr3 217290866 217290935 -10233643 + AT_rich Low_complexity Low_complexity 1 69 0 227 235 118 88 chr3 217291374 217291544 -10233034 - HAL1 LINE L1 -2331 176 2 581 307 126 29 chr3 217291845 217292361 -10232217 - L2 LINE L2 -85 3228 2689 4266 200 68 2 chr3 217292363 217293244 -10231334 + L1MC2 LINE L1 5380 6318 -26 485 215 100 23 chr3 217293276 217293406 -10231172 - L2 LINE L2 -853 2461 2322 21 0 0 0 chr3 217293936 217293957 -10230621 + AT_rich Low_complexity Low_complexity 1 21 0 266 244 12 0 chr3 217295220 217295302 -10229276 + (TA)n Simple_repeat Simple_repeat 2 84 0 740 265 45 0 chr3 217295388 217295588 -10228990 + MER58A DNA MER1_type 12 220 -4 358 329 53 12 chr3 217295586 217295756 -10228822 + MARNA DNA Mariner 338 514 -72 * 398 264 116 7 chr3 217295925 217296080 -10228498 + MIR SINE MIR 91 262 0 28 48 0 0 chr3 217296174 217296216 -10228362 + AT_rich Low_complexity Low_complexity 1 42 0 610 261 101 14 chr3 217297041 217297248 -10227330 + MIR SINE MIR 38 262 0 21 36 0 0 chr3 217298120 217298148 -10226430 + AT_rich Low_complexity Low_complexity 1 28 0 28 29 0 0 chr3 217298188 217298223 -10226355 + AT_rich Low_complexity Low_complexity 1 35 0 2758 127 21 0 chr3 217298459 217298878 -10225700 + MSTA LTR MaLR 1 428 0 1773 174 19 43 chr3 217298957 217299330 -10225248 + THE1B LTR MaLR 1 364 0 298 259 19 19 chr3 217299729 217299837 -10224741 + CT-rich Low_complexity Low_complexity 1 108 0 2150 164 10 25 chr3 217299855 217300251 -10224327 - MLT1B LTR MaLR 0 390 1 6231 23 3 3 chr3 217302271 217302998 -10221580 + L1PA3 LINE L1 5429 6155 0 2501 17 41 0 chr3 217303644 217303939 -10220639 + AluY SINE Alu 2 308 -3 258 180 0 0 chr3 217305396 217305457 -10219121 + (TCCA)n Simple_repeat Simple_repeat 1 61 0 2362 57 0 3 chr3 217305522 217305819 -10218759 + AluY SINE Alu 1 296 -15 396 380 54 9 chr3 217305819 217306043 -10218535 + L3 LINE CR1 1259 1492 -85 310 235 0 59 chr3 217307442 217307544 -10217034 + L1ME LINE L1 5730 5825 -296 23 78 0 0 chr3 217307780 217307831 -10216747 + AT_rich Low_complexity Low_complexity 1 51 0 240 59 0 0 chr3 217307881 217307915 -10216663 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 641 248 29 70 chr3 217308882 217309124 -10215454 - MIR SINE MIR -21 241 10 22 0 0 0 chr3 217309234 217309256 -10215322 + AT_rich Low_complexity Low_complexity 1 22 0 22 0 0 0 chr3 217309590 217309612 -10214966 + AT_rich Low_complexity Low_complexity 1 22 0 278 303 37 28 chr3 217309788 217309897 -10214681 + MIR SINE MIR 1 110 -152 2233 88 3 0 chr3 217310276 217310560 -10214018 - AluSx SINE Alu -27 285 1 195 214 0 54 chr3 217311480 217311536 -10213042 + L3b LINE CR1 1527 1579 -4 317 305 142 16 chr3 217313806 217313996 -10210582 + L1MC4 LINE L1 7829 8042 0 239 188 43 14 chr3 217314996 217315065 -10209513 - MLT1D LTR MaLR -8 497 427 230 329 0 0 chr3 217315469 217315539 -10209039 + Charlie4 DNA MER1_type 1892 1961 0 229 343 0 0 chr3 217315613 217315683 -10208895 - L2 LINE L2 -2 3270 3201 1958 119 41 63 chr3 217315934 217316253 -10208325 - AluSx SINE Alu 0 312 1 504 307 101 29 chr3 217319592 217320107 -10204471 + L1MC4a LINE L1 5385 5936 -1872 735 196 12 6 chr3 217321284 217321447 -10203131 - L1MD2 LINE L1 -7 6352 6189 283 164 96 0 chr3 217321468 217321541 -10203037 - L1MA4A LINE L1 -8 6295 6216 977 275 144 14 chr3 217322547 217322907 -10201671 + L2 LINE L2 1912 2318 -996 716 305 4 13 chr3 217322905 217323144 -10201434 - L2 LINE L2 -225 3088 2852 * 1549 314 37 37 chr3 217323211 217323622 -10200956 + L2 LINE L2 2299 2709 -604 2030 112 3 17 chr3 217323622 217323909 -10200669 - AluSx SINE Alu -17 295 13 1549 314 37 37 chr3 217323909 217324525 -10200053 + L2 LINE L2 2709 3312 -1 21 0 0 0 chr3 217325398 217325419 -10199159 + AT_rich Low_complexity Low_complexity 1 21 0 199 286 14 0 chr3 217325583 217325653 -10198925 + MIR SINE MIR 179 249 -13 951 174 152 112 chr3 217325907 217326354 -10198224 + MER31B LTR ERV1 2 466 0 2103 103 14 0 chr3 217326520 217326802 -10197776 + AluSq SINE Alu 1 286 -27 24 0 0 0 chr3 217326802 217326826 -10197752 + AT_rich Low_complexity Low_complexity 1 24 0 6047 58 1 0 chr3 217327420 217328236 -10196342 + L1P LINE L1 4229 5045 -1101 4298 87 7 2 chr3 217328238 217328838 -10195740 + L1P LINE L1 2 604 -5542 224 114 68 0 chr3 217328997 217329041 -10195537 + (ATAGG)n Simple_repeat Simple_repeat 4 50 0 220 247 190 63 chr3 217331524 217331682 -10192896 - L2 LINE L2 -1014 2300 2123 507 257 181 0 chr3 217331711 217331855 -10192723 - MER91B DNA MER1_type -2 188 19 257 286 97 26 chr3 217331877 217332031 -10192547 - L2 LINE L2 -1219 2095 1931 3225 111 14 24 chr3 217332111 217332605 -10191973 + LTR22B LTR ERVK 1 489 -3 948 132 9 9 chr3 217433786 217434141 -10090437 + (GAATG)n Satellite Satellite 1 355 0 1050 108 0 0 chr3 217434171 217434382 -10090196 + (GAATG)n Satellite Satellite 1 211 0 899 113 0 27 chr3 217434410 217434595 -10089983 + (GAATG)n Satellite Satellite 1 180 0 614 164 0 22 chr3 217434608 217434839 -10089739 + (GAATG)n Satellite Satellite 1 225 0 1206 114 0 15 chr3 217434850 217435366 -10089212 + (GAATG)n Satellite Satellite 1 680 0 1206 74 0 0 chr3 217435366 217435541 -10089037 + (GAATG)n Satellite Satellite 4 178 0 1026 115 0 0 chr3 217435619 217435793 -10088785 + (GAATG)n Satellite Satellite 2 175 0 733 142 0 53 chr3 217435804 217435994 -10088584 + (GAATG)n Satellite Satellite 1 180 0 948 125 3 3 chr3 217436013 217436413 -10088165 + (GAATG)n Satellite Satellite 1 400 0 1002 117 0 0 chr3 217436429 217436608 -10087970 + (GAATG)n Satellite Satellite 2 180 0 960 151 0 0 chr3 217436619 217437316 -10087262 + (GAATG)n Satellite Satellite 1 697 0 927 145 0 17 chr3 217437328 217437589 -10086989 + (GAATG)n Satellite Satellite 1 432 0 927 134 0 0 chr3 217437589 217437768 -10086810 + (GAATG)n Satellite Satellite 1 179 0 1152 109 0 11 chr3 217437903 217438417 -10086161 + (GAATG)n Satellite Satellite 2 674 0 1035 148 0 0 chr3 217438444 217438808 -10085770 + (GAATG)n Satellite Satellite 1 364 0 1110 115 0 2 chr3 217438823 217439226 -10085352 + (GAATG)n Satellite Satellite 1 581 0 743 157 0 27 chr3 217439253 217439438 -10085140 + (GAATG)n Satellite Satellite 1 180 0 750 165 0 0 chr3 217439454 217439624 -10084954 + (GAATG)n Satellite Satellite 5 174 0 816 149 0 0 chr3 217439658 217439832 -10084746 + (GAATG)n Satellite Satellite 2 175 0 1116 96 0 0 chr3 217439849 217440026 -10084552 + (GAATG)n Satellite Satellite 3 179 0 858 163 0 0 chr3 217440155 217440515 -10084063 + (CATTC)n Satellite Satellite 1 360 0 1033 115 10 13 chr3 217440526 217441007 -10083571 + (CATTC)n Satellite Satellite 2 303 0 1059 150 0 4 chr3 217441018 217441559 -10083019 + (CATTC)n Satellite Satellite 1 538 0 600 196 0 0 chr3 217441597 217441776 -10082802 + (CATTC)n Satellite Satellite 1 179 0 215 130 22 43 chr3 217441777 217441823 -10082755 + HSATII Satellite Satellite 35 79 -91 831 161 0 0 chr3 217441832 217442012 -10082566 + (CATTC)n Satellite Satellite 1 180 0 1092 122 0 3 chr3 217442047 217442413 -10082165 + (CATTC)n Satellite Satellite 1 364 0 844 134 4 4 chr3 217442449 217442713 -10081865 + (CATTC)n Satellite Satellite 1 264 0 1110 100 0 0 chr3 217442733 217442913 -10081665 + (CATTC)n Satellite Satellite 1 180 0 912 137 0 12 chr3 217442924 217443359 -10081219 + (CATTC)n Satellite Satellite 1 429 0 930 122 0 0 chr3 217443384 217443564 -10081014 + (CATTC)n Satellite Satellite 1 180 0 1043 148 3 6 chr3 217443575 217444104 -10080474 + (CATTC)n Satellite Satellite 2 350 0 282 156 0 0 chr3 217444115 217444179 -10080399 + (CATTC)n Satellite Satellite 3 66 0 1033 119 2 25 chr3 217444193 217444913 -10079665 + (CATTC)n Satellite Satellite 1 703 0 1059 136 3 12 chr3 217444945 217445535 -10079043 + (CATTC)n Satellite Satellite 1 584 0 781 101 5 48 chr3 217445568 217445756 -10078822 + (CATTC)n Satellite Satellite 1 180 0 1066 126 3 3 chr3 217445767 217446086 -10078492 + (CATTC)n Satellite Satellite 1 319 0 834 111 0 53 chr3 217446101 217446291 -10078287 + (CATTC)n Satellite Satellite 1 180 0 927 137 6 0 chr3 217446302 217446653 -10077925 + (CATTC)n Satellite Satellite 1 353 0 972 136 5 24 chr3 217446685 217447044 -10077534 + (CATTC)n Satellite Satellite 2 353 0 857 119 0 20 chr3 217447059 217447309 -10077269 + (CATTC)n Satellite Satellite 1 244 0 1095 133 2 7 chr3 217447335 217447768 -10076810 + (CATTC)n Satellite Satellite 1 431 0 852 142 0 0 chr3 217447835 217448055 -10076523 + (CATTC)n Satellite Satellite 1 220 0 954 148 0 11 chr3 217448066 217448415 -10076163 + (CATTC)n Satellite Satellite 4 346 0 216 122 0 0 chr3 217448428 217448469 -10076109 + (CATTC)n Satellite Satellite 1 41 0 1086 139 0 7 chr3 217448488 217449112 -10075466 + (CATTC)n Satellite Satellite 1 619 0 722 156 0 11 chr3 217449132 217449311 -10075267 + (CATTC)n Satellite Satellite 1 177 0 800 146 6 0 chr3 217449355 217449533 -10075045 + (GAATG)n Satellite Satellite 2 180 0 927 122 0 0 chr3 217449548 217449747 -10074831 + (GAATG)n Satellite Satellite 1 199 0 240 59 0 0 chr3 217449763 217449797 -10074781 + (GAATG)n Satellite Satellite 2 35 0 893 105 0 42 chr3 217449818 217450062 -10074516 + (GAATG)n Satellite Satellite 1 233 0 684 175 0 0 chr3 217450083 217450243 -10074335 + (GAATG)n Satellite Satellite 1 160 0 942 130 0 0 chr3 217450255 217450432 -10074146 + (GAATG)n Satellite Satellite 2 178 0 927 162 3 6 chr3 217450447 217451075 -10073503 + (GAATG)n Satellite Satellite 1 657 0 185 65 32 0 chr3 217451075 217451106 -10073472 + (GAATG)n Satellite Satellite 1 32 0 981 151 0 0 chr3 217451331 217451615 -10072963 + (GAATG)n Satellite Satellite 1 284 0 206 103 0 0 chr3 217451622 217451651 -10072927 + (TAATG)n Simple_repeat Simple_repeat 1 29 0 1068 134 0 4 chr3 217451653 217452010 -10072568 + (GAATG)n Satellite Satellite 1 534 0 886 71 0 86 chr3 217452036 217452233 -10072345 + (GAATG)n Satellite Satellite 1 180 0 687 173 0 0 chr3 217452249 217452417 -10072161 + (GAATG)n Satellite Satellite 2 169 0 1056 127 1 3 chr3 217452428 217452976 -10071602 + (GAATG)n Satellite Satellite 1 726 0 839 135 0 27 chr3 217452997 217453182 -10071396 + (GAATG)n Satellite Satellite 1 180 0 1136 94 9 0 chr3 217453210 217453454 -10071124 + (GAATG)n Satellite Satellite 1 246 0 922 117 6 6 chr3 217453465 217453645 -10070933 + (GAATG)n Satellite Satellite 1 180 0 1148 131 3 10 chr3 217453656 217453949 -10070629 + (GAATG)n Satellite Satellite 1 655 0 1148 109 3 0 chr3 217453949 217454316 -10070262 + (GAATG)n Satellite Satellite 1 368 0 930 102 5 43 chr3 217454407 217454594 -10069984 + (GAATG)n Satellite Satellite 1 180 0 993 123 0 0 chr3 217454619 217454798 -10069780 + (GAATG)n Satellite Satellite 2 180 0 977 126 4 11 chr3 217454812 217455157 -10069421 + (GAATG)n Satellite Satellite 1 520 0 1239 90 3 0 chr3 217455177 217455574 -10069004 + (GAATG)n Satellite Satellite 1 398 0 196 638 6 0 chr3 217455587 217455764 -10068814 + (GAATG)n Satellite Satellite 2 179 0 756 145 0 0 chr3 217455795 217456004 -10068574 + (GAATG)n Satellite Satellite 1 209 0 1068 111 0 0 chr3 217456015 217456195 -10068383 + (GAATG)n Satellite Satellite 1 180 0 1185 89 2 22 chr3 217456225 217456678 -10067900 + (GAATG)n Satellite Satellite 1 443 0 245 119 0 0 chr3 217456704 217456746 -10067832 + TAR1 Satellite telomeric 2070 2111 0 1071 130 0 16 chr3 217456758 217457850 -10066728 + (CATTC)n Satellite Satellite 1 1074 0 1185 133 0 6 chr3 217457869 217458400 -10066178 + (CATTC)n Satellite Satellite 2 351 0 1047 129 0 0 chr3 217458414 217458768 -10065810 + (CATTC)n Satellite Satellite 1 354 0 1080 143 2 2 chr3 217458785 217459665 -10064913 + (CATTC)n Satellite Satellite 1 880 0 1068 106 0 0 chr3 217459680 217459859 -10064719 + (CATTC)n Satellite Satellite 1 179 0 867 120 0 0 chr3 217459871 217460029 -10064549 + (CATTC)n Satellite Satellite 2 159 0 1059 122 0 22 chr3 217460041 217460401 -10064177 + (CATTC)n Satellite Satellite 2 353 0 1260 127 2 6 chr3 217460426 217461368 -10063210 + (CATTC)n Satellite Satellite 1 937 0 951 145 0 25 chr3 217461379 217461866 -10062712 + (CATTC)n Satellite Satellite 2 301 0 1005 123 0 0 chr3 217461883 217462062 -10062516 + (CATTC)n Satellite Satellite 2 180 0 1353 113 3 8 chr3 217462083 217463295 -10061283 + (CATTC)n Satellite Satellite 1 1205 0 1287 105 0 9 chr3 217463321 217463895 -10060683 + (CATTC)n Satellite Satellite 1 569 0 228 67 0 0 chr3 217463908 217463938 -10060640 + (CATTC)n Satellite Satellite 1 30 0 919 142 3 24 chr3 217463965 217464328 -10060250 + (CATTC)n Satellite Satellite 3 356 0 1028 118 3 16 chr3 217464344 217464707 -10059871 + (CATTC)n Satellite Satellite 2 359 0 1056 111 0 0 chr3 217464746 217464926 -10059652 + (CATTC)n Satellite Satellite 1 180 0 1067 130 5 7 chr3 217465032 217483489 -10041089 + BSR/Beta Satellite Satellite 1 18415 -8 1067 128 5 7 chr3 217483501 217493441 -10031137 + BSR/Beta Satellite Satellite 1 9918 -22 1067 128 6 7 chr3 217493550 217504877 -10019701 + BSR/Beta Satellite Satellite 1 11310 -58 191 114 0 45 chr3 217504985 217505029 -10019549 + (CATTC)n Simple_repeat Simple_repeat 5 46 0 314 113 0 16 chr3 217505057 217505119 -10019459 + (CATTC)n Satellite Satellite 2 62 0 683 162 0 6 chr3 217505132 217505299 -10019279 + (CATTC)n Satellite Satellite 5 170 0 1077 103 0 0 chr3 217505314 217505489 -10019089 + (CATTC)n Satellite Satellite 1 175 0 712 146 0 32 chr3 217505520 217505705 -10018873 + (CATTC)n Satellite Satellite 2 180 0 1065 111 0 0 chr3 217505721 217506124 -10018454 + (CATTC)n Satellite Satellite 1 403 0 600 167 0 0 chr3 217506136 217506280 -10018298 + (CATTC)n Satellite Satellite 2 145 0 936 128 0 0 chr3 217506300 217506479 -10018099 + (CATTC)n Satellite Satellite 1 179 0 1038 158 0 7 chr3 217506496 217508058 -10016520 + (CATTC)n Satellite Satellite 1 1551 0 890 135 6 0 chr3 217508090 217508268 -10016310 + (CATTC)n Satellite Satellite 2 180 0 180 0 0 0 chr3 217508280 217508300 -10016278 + (CATTC)n Satellite Satellite 3 22 0 751 132 0 53 chr3 217508313 217508503 -10016075 + (CATTC)n Satellite Satellite 1 180 0 864 146 0 0 chr3 217508529 217508707 -10015871 + (CATTC)n Satellite Satellite 2 179 0 1179 106 0 0 chr3 217508724 217509093 -10015485 + (CATTC)n Satellite Satellite 1 369 0 1080 135 0 0 chr3 217509104 217509718 -10014860 + (CATTC)n Satellite Satellite 1 614 0 387 125 0 0 chr3 217509730 217509802 -10014776 + (CATTC)n Satellite Satellite 3 74 0 1161 73 0 0 chr3 217509814 217509979 -10014599 + (CATTC)n Satellite Satellite 2 166 0 866 119 0 27 chr3 217510008 217510193 -10014385 + (CATTC)n Satellite Satellite 1 180 0 723 179 0 0 chr3 217510225 217510533 -10014045 + (CATTC)n Satellite Satellite 1 308 0 1200 133 0 2 chr3 217510544 217511093 -10013485 + (CATTC)n Satellite Satellite 1 547 0 942 138 0 12 chr3 217511110 217511609 -10012969 + (CATTC)n Satellite Satellite 1 492 0 903 149 3 7 chr3 217511620 217511915 -10012663 + (CATTC)n Satellite Satellite 2 295 0 840 151 0 0 chr3 217511949 217512128 -10012450 + (CATTC)n Satellite Satellite 2 180 0 972 143 0 8 chr3 217512154 217512812 -10011766 + (CATTC)n Satellite Satellite 1 652 0 726 132 0 53 chr3 217512838 217513028 -10011550 + (CATTC)n Satellite Satellite 1 180 0 513 172 0 0 chr3 217513049 217513171 -10011407 + (CATTC)n Satellite Satellite 2 123 0 791 130 0 27 chr3 217513184 217513368 -10011210 + (CATTC)n Satellite Satellite 2 180 0 1008 141 0 0 chr3 217513379 217513818 -10010760 + (CATTC)n Satellite Satellite 1 439 0 972 155 0 7 chr3 217513830 217514118 -10010460 + (CATTC)n Satellite Satellite 3 287 0 906 140 0 0 chr3 217514139 217514318 -10010260 + (CATTC)n Satellite Satellite 2 180 0 942 144 3 3 chr3 217514349 217514700 -10009878 + (CATTC)n Satellite Satellite 1 351 0 816 156 0 0 chr3 217514723 217514903 -10009675 + (CATTC)n Satellite Satellite 1 180 0 1003 141 5 7 chr3 217515057 217520623 -10003955 - BSR/Beta Satellite Satellite 0 5557 1 * 2250 196 12 8 chr3 217520618 217521114 -10003464 + LSAU Satellite Satellite 1 498 0 365 212 13 93 chr3 217522559 217522710 -10001868 + LSAU Satellite Satellite 1 139 -359 202 156 44 0 chr3 217522829 217522874 -10001704 + (TGG)n Simple_repeat Simple_repeat 2 48 0 1016 131 5 10 chr3 217523371 217530813 -9993765 - BSR/Beta Satellite Satellite 0 7399 1 286 184 0 126 chr3 217530995 217531098 -9993480 + LSAU Satellite Satellite 1 90 -408 934 73 7 7 chr3 217531130 217531280 -9993298 + (GAATG)n Satellite Satellite 3 152 0 1146 95 0 0 chr3 217531298 217531477 -9993101 + (GAATG)n Satellite Satellite 1 179 0 1128 98 3 3 chr3 217531505 217531867 -9992711 + (GAATG)n Satellite Satellite 1 362 0 995 118 0 3 chr3 217531897 217532252 -9992326 + (GAATG)n Satellite Satellite 1 353 0 312 111 0 0 chr3 217532264 217532318 -9992260 + (TAATG)n Simple_repeat Simple_repeat 1 54 0 1050 131 0 13 chr3 217532333 217532607 -9991971 + (GAATG)n Satellite Satellite 1 448 0 945 128 0 0 chr3 217532618 217532798 -9991780 + (GAATG)n Satellite Satellite 1 180 0 972 133 0 0 chr3 217532828 217533008 -9991570 + (GAATG)n Satellite Satellite 1 180 0 297 162 0 0 chr3 217533024 217533092 -9991486 + (GAATG)n Satellite Satellite 2 69 0 653 155 11 11 chr3 217533116 217533290 -9991288 + (GAATG)n Satellite Satellite 4 177 0 966 142 4 2 chr3 217533306 217533840 -9990738 + (GAATG)n Satellite Satellite 1 535 0 814 126 6 28 chr3 217533852 217534034 -9990544 + (GAATG)n Satellite Satellite 2 179 0 231 213 0 0 chr3 217534045 217534120 -9990458 + (GAATG)n Satellite Satellite 1 75 0 936 133 0 0 chr3 217534140 217534320 -9990258 + (GAATG)n Satellite Satellite 1 180 0 396 71 0 0 chr3 217534331 217534387 -9990191 + (GAATG)n Satellite Satellite 4 59 0 242 210 0 16 chr3 217534501 217534563 -9990015 + GA-rich Low_complexity Low_complexity 2 62 0 679 182 6 0 chr3 217534563 217534739 -9989839 + (GAATG)n Satellite Satellite 4 180 0 966 150 3 3 chr3 217534753 217535162 -9989416 + (GAATG)n Satellite Satellite 1 409 0 831 155 0 0 chr3 217535177 217535351 -9989227 + (GAATG)n Satellite Satellite 2 175 0 972 137 0 14 chr3 217535362 217535731 -9988847 + (GAATG)n Satellite Satellite 1 363 0 486 183 0 0 chr3 217535745 217535865 -9988713 + (GAATG)n Satellite Satellite 2 121 0 1197 112 0 2 chr3 217535878 217536701 -9987877 + (GAATG)n Satellite Satellite 1 1000 0 768 154 0 0 chr3 217536739 217536954 -9987624 + (GAATG)n Satellite Satellite 1 215 0 1122 119 0 1 chr3 217536966 217537485 -9987093 + (GAATG)n Satellite Satellite 1 697 0 907 108 0 27 chr3 217537496 217537681 -9986897 + (GAATG)n Satellite Satellite 1 180 0 910 122 0 17 chr3 217537700 217537943 -9986635 + (GAATG)n Satellite Satellite 1 238 0 1059 101 0 0 chr3 217537964 217538179 -9986399 + (GAATG)n Satellite Satellite 1 215 0 745 151 6 6 chr3 217538191 217538363 -9986215 + (GAATG)n Satellite Satellite 3 174 0 837 116 0 0 chr3 217538388 217538534 -9986044 + (GAATG)n Satellite Satellite 2 147 0 972 128 0 0 chr3 217538555 217538734 -9985844 + (GAATG)n Satellite Satellite 2 180 0 720 173 0 0 chr3 217538745 217538924 -9985654 + (GAATG)n Satellite Satellite 1 179 0 924 118 0 0 chr3 217538950 217539163 -9985415 + (GAATG)n Satellite Satellite 1 213 0 774 167 0 0 chr3 217539184 217539364 -9985214 + (GAATG)n Satellite Satellite 1 180 0 1188 104 1 15 chr3 217539393 217539669 -9984909 + (GAATG)n Satellite Satellite 1 433 0 957 110 0 0 chr3 217539669 217539832 -9984746 + (GAATG)n Satellite Satellite 3 165 0 726 160 0 0 chr3 217539950 217540168 -9984410 + (GAATG)n Satellite Satellite 1 218 0 1308 108 2 0 chr3 217540179 217540817 -9983761 + (GAATG)n Satellite Satellite 1 639 0 1038 122 2 26 chr3 217540839 217541455 -9983123 + (GAATG)n Satellite Satellite 1 601 0 965 119 7 4 chr3 217541485 217541759 -9982819 + (GAATG)n Satellite Satellite 1 275 0 861 147 0 11 chr3 217541770 217542244 -9982334 + (GAATG)n Satellite Satellite 1 469 0 972 121 0 0 chr3 217542265 217542438 -9982140 + (GAATG)n Satellite Satellite 3 175 0 938 122 0 17 chr3 217542465 217542646 -9981932 + (GAATG)n Satellite Satellite 3 180 0 969 138 0 18 chr3 217542673 217543039 -9981539 + (GAATG)n Satellite Satellite 2 534 0 1127 120 2 0 chr3 217543054 217543499 -9981079 + (GAATG)n Satellite Satellite 1 446 0 963 129 0 0 chr3 217543513 217543691 -9980887 + (GAATG)n Satellite Satellite 3 180 0 1065 103 0 0 chr3 217543724 217543899 -9980679 + (GAATG)n Satellite Satellite 5 179 0 1191 103 0 10 chr3 217543922 217544546 -9980032 + (GAATG)n Satellite Satellite 2 794 0 824 129 0 5 chr3 217544558 217544771 -9979807 + (GAATG)n Satellite Satellite 1 211 0 1032 150 0 0 chr3 217544794 217545153 -9979425 + (GAATG)n Satellite Satellite 1 359 0 1074 94 0 0 chr3 217545169 217545377 -9979201 + (GAATG)n Satellite Satellite 1 208 0 458 208 7 0 chr3 217545397 217545546 -9979032 + (GAATG)n Satellite Satellite 3 152 0 1110 139 0 0 chr3 217545558 217545902 -9978676 + (GAATG)n Satellite Satellite 1 344 0 822 162 0 0 chr3 217545913 217546092 -9978486 + (GAATG)n Satellite Satellite 2 180 0 1167 83 0 0 chr3 217546104 217546311 -9978267 + (GAATG)n Satellite Satellite 1 207 0 897 140 0 0 chr3 217546333 217546511 -9978067 + (GAATG)n Satellite Satellite 3 180 0 621 119 0 72 chr3 217546538 217546732 -9977846 + (GAATG)n Satellite Satellite 1 180 0 936 157 0 7 chr3 217546750 217546991 -9977587 + (GAATG)n Satellite Satellite 2 416 0 870 101 0 53 chr3 217547002 217547190 -9977388 + (GAATG)n Satellite Satellite 3 180 0 1143 125 0 0 chr3 217547232 217547592 -9976986 + (GAATG)n Satellite Satellite 1 360 0 1161 129 0 0 chr3 217547622 217548435 -9976143 + (GAATG)n Satellite Satellite 1 813 0 871 101 0 53 chr3 217548447 217548635 -9975943 + (GAATG)n Satellite Satellite 3 180 0 954 160 0 9 chr3 217548653 217549107 -9975471 + (GAATG)n Satellite Satellite 2 627 0 894 104 6 33 chr3 217549141 217549324 -9975254 + (GAATG)n Satellite Satellite 3 180 0 939 123 0 0 chr3 217549346 217549588 -9974990 + (GAATG)n Satellite Satellite 1 242 0 1185 83 0 0 chr3 217549606 217549786 -9974792 + (GAATG)n Satellite Satellite 1 180 0 1137 130 1 4 chr3 217549807 217551320 -9973258 + (GAATG)n Satellite Satellite 2 1675 0 1020 126 0 10 chr3 217551336 217551734 -9972844 + (GAATG)n Satellite Satellite 1 393 0 1146 122 1 4 chr3 217551748 217552272 -9972306 + (GAATG)n Satellite Satellite 3 699 0 974 143 2 0 chr3 217552285 217552764 -9971814 + (GAATG)n Satellite Satellite 1 480 0 1002 117 0 0 chr3 217552777 217552956 -9971622 + (GAATG)n Satellite Satellite 2 180 0 771 133 0 0 chr3 217552970 217553121 -9971457 + (GAATG)n Satellite Satellite 2 152 0 1059 91 11 6 chr3 217553132 217553308 -9971270 + (GAATG)n Satellite Satellite 4 180 0 680 169 0 27 chr3 217553321 217553505 -9971073 + (GAATG)n Satellite Satellite 1 179 0 870 132 0 0 chr3 217553518 217553677 -9970901 + (GAATG)n Satellite Satellite 4 162 0 963 120 0 18 chr3 217553688 217553969 -9970609 + (GAATG)n Satellite Satellite 1 449 0 871 106 0 53 chr3 217553981 217554170 -9970408 + (GAATG)n Satellite Satellite 1 179 0 1050 121 0 0 chr3 217554185 217554579 -9969999 + (GAATG)n Satellite Satellite 1 394 0 422 174 0 35 chr3 217554590 217554734 -9969844 + (GAATG)n Satellite Satellite 2 140 0 793 149 0 27 chr3 217554750 217555121 -9969457 + (GAATG)n Satellite Satellite 1 361 0 972 126 0 0 chr3 217555132 217555306 -9969272 + (GAATG)n Satellite Satellite 4 177 0 879 131 0 0 chr3 217555317 217555529 -9969049 + (GAATG)n Satellite Satellite 1 212 0 1017 149 0 16 chr3 217555569 217555979 -9968599 + (GAATG)n Satellite Satellite 1 578 0 1017 118 0 0 chr3 217555979 217556157 -9968421 + (GAATG)n Satellite Satellite 3 180 0 1011 127 0 19 chr3 217556460 217556829 -9967749 + (GAATG)n Satellite Satellite 1 538 0 905 120 0 27 chr3 217556855 217557039 -9967539 + (GAATG)n Satellite Satellite 2 180 0 1042 142 2 2 chr3 217557080 217557565 -9967013 + (GAATG)n Satellite Satellite 1 485 0 987 124 0 0 chr3 217557577 217557754 -9966824 + (GAATG)n Satellite Satellite 2 178 0 1023 123 0 19 chr3 217557795 217558164 -9966414 + (GAATG)n Satellite Satellite 1 538 0 930 128 0 0 chr3 217558186 217558408 -9966170 + (GAATG)n Satellite Satellite 1 222 0 948 147 0 8 chr3 217558425 217558970 -9965608 + (GAATG)n Satellite Satellite 1 719 0 942 127 0 0 chr3 217558996 217559569 -9965009 + (GAATG)n Satellite Satellite 1 573 0 1200 118 0 2 chr3 217559586 217560469 -9964109 + (GAATG)n Satellite Satellite 1 1061 0 1188 122 0 0 chr3 217560481 217561024 -9963554 + (GAATG)n Satellite Satellite 1 543 0 1014 115 0 0 chr3 217561046 217561220 -9963358 + (GAATG)n Satellite Satellite 2 175 0 970 134 3 7 chr3 217561261 217561675 -9962903 + (GAATG)n Satellite Satellite 2 590 0 831 147 0 0 chr3 217561691 217561868 -9962710 + (GAATG)n Satellite Satellite 4 180 0 1056 125 0 13 chr3 217561879 217562354 -9962224 + (GAATG)n Satellite Satellite 3 628 0 1044 94 0 0 chr3 217562371 217562530 -9962048 + (GAATG)n Satellite Satellite 2 160 0 1122 100 0 0 chr3 217562541 217562721 -9961857 + (GAATG)n Satellite Satellite 1 180 0 765 172 0 0 chr3 217562746 217562926 -9961652 + (GAATG)n Satellite Satellite 1 180 0 200 157 11 124 chr3 217562927 217562951 -9961627 - HSATII Satellite Satellite -57 113 88 924 114 0 5 chr3 217562951 217563151 -9961427 + (GAATG)n Satellite Satellite 1 198 0 200 157 11 124 chr3 217563151 217563162 -9961416 - HSATII Satellite Satellite -82 88 35 1047 137 0 2 chr3 217563162 217563520 -9961058 + (GAATG)n Satellite Satellite 1 536 0 876 155 0 0 chr3 217563540 217563824 -9960754 + (GAATG)n Satellite Satellite 1 284 0 930 138 0 0 chr3 217563835 217564009 -9960569 + (GAATG)n Satellite Satellite 4 177 0 860 171 0 9 chr3 217564020 217564547 -9960031 + (GAATG)n Satellite Satellite 1 522 0 948 149 0 1 chr3 217564565 217565181 -9959397 + (GAATG)n Satellite Satellite 1 795 0 1078 129 1 10 chr3 217565227 217566047 -9958531 + (GAATG)n Satellite Satellite 1 988 0 1062 112 0 0 chr3 217566047 217566225 -9958353 + (GAATG)n Satellite Satellite 3 180 0 1152 73 0 0 chr3 217566292 217566456 -9958122 + (GAATG)n Satellite Satellite 2 165 0 822 161 0 0 chr3 217566892 217567066 -9957512 + (GAATG)n Satellite Satellite 2 175 0 1035 131 0 5 chr3 217567078 217567507 -9957071 + (GAATG)n Satellite Satellite 2 599 0 1080 126 0 5 chr3 217567532 217567987 -9956591 + (GAATG)n Satellite Satellite 2 631 0 1164 110 0 0 chr3 217568008 217568372 -9956206 + (GAATG)n Satellite Satellite 1 364 0 936 108 0 0 chr3 217568385 217568542 -9956036 + (GAATG)n Satellite Satellite 2 158 0 918 144 0 0 chr3 217568563 217568743 -9955835 + (GAATG)n Satellite Satellite 1 180 0 855 156 0 0 chr3 217568788 217568967 -9955611 + (GAATG)n Satellite Satellite 2 180 0 1035 117 0 0 chr3 217568983 217569163 -9955415 + (GAATG)n Satellite Satellite 1 180 0 687 169 0 0 chr3 217569178 217569403 -9955175 + (GAATG)n Satellite Satellite 1 225 0 924 102 0 0 chr3 217569428 217569575 -9955003 + (GAATG)n Satellite Satellite 4 150 0 188 119 0 24 chr3 217569586 217569628 -9954950 + (GAATG)n Satellite Satellite 2 42 0 1015 116 4 4 chr3 217569639 217569873 -9954705 + (GAATG)n Satellite Satellite 1 234 0 1203 113 0 0 chr3 217569889 217570466 -9954112 + (GAATG)n Satellite Satellite 1 577 0 948 154 0 2 chr3 217570477 217570823 -9953755 + (GAATG)n Satellite Satellite 1 525 0 768 154 3 19 chr3 217570834 217571205 -9953373 + (GAATG)n Satellite Satellite 1 365 0 1137 143 3 0 chr3 217571230 217571574 -9953004 + (GAATG)n Satellite Satellite 1 345 0 900 130 0 0 chr3 217571587 217571748 -9952830 + (GAATG)n Satellite Satellite 2 162 0 1106 128 3 6 chr3 217571790 217572538 -9952040 + (GAATG)n Satellite Satellite 1 745 0 914 158 3 0 chr3 217572758 217573120 -9951458 + (GAATG)n Satellite Satellite 1 363 0 1188 124 0 2 chr3 217573142 217573842 -9950736 + (GAATG)n Satellite Satellite 2 876 0 1053 86 0 0 chr3 217573873 217574036 -9950542 + (GAATG)n Satellite Satellite 2 164 0 894 143 0 0 chr3 217574071 217574246 -9950332 + (GAATG)n Satellite Satellite 2 176 0 966 130 0 0 chr3 217574297 217574474 -9950104 + (GAATG)n Satellite Satellite 4 180 0 689 158 0 27 chr3 217574487 217574670 -9949908 + (GAATG)n Satellite Satellite 3 180 0 1059 141 0 0 chr3 217574692 217575236 -9949342 + (GAATG)n Satellite Satellite 1 544 0 930 135 0 0 chr3 217575289 217575467 -9949111 + (GAATG)n Satellite Satellite 1 178 0 939 152 0 3 chr3 217575482 217575892 -9948686 + (GAATG)n Satellite Satellite 1 587 0 1188 131 0 1 chr3 217575903 217576618 -9947960 + (GAATG)n Satellite Satellite 1 893 0 933 162 0 0 chr3 217576631 217576983 -9947595 + (GAATG)n Satellite Satellite 1 352 0 756 173 0 0 chr3 217577013 217577192 -9947386 + (GAATG)n Satellite Satellite 2 180 0 1121 90 6 0 chr3 217577210 217577387 -9947191 + (GAATG)n Satellite Satellite 1 178 0 1035 120 0 0 chr3 217577398 217577767 -9946811 + (GAATG)n Satellite Satellite 1 369 0 634 169 0 27 chr3 217577783 217577966 -9946612 + (GAATG)n Satellite Satellite 2 179 0 993 135 0 0 chr3 217577982 217578215 -9946363 + (GAATG)n Satellite Satellite 1 233 0 900 146 0 0 chr3 217578227 217578405 -9946173 + (GAATG)n Satellite Satellite 3 180 0 267 54 0 0 chr3 217578423 217578460 -9946118 + (GAATG)n Satellite Satellite 3 39 0 1047 117 0 0 chr3 217578482 217578662 -9945916 + (GAATG)n Satellite Satellite 1 180 0 630 193 0 0 chr3 217578675 217578851 -9945727 + (GAATG)n Satellite Satellite 2 177 0 1041 118 0 0 chr3 217578867 217579045 -9945533 + (GAATG)n Satellite Satellite 3 180 0 1029 141 0 6 chr3 217579065 217580047 -9944531 + (GAATG)n Satellite Satellite 1 1149 0 1125 130 3 6 chr3 217580063 217580658 -9943920 + (GAATG)n Satellite Satellite 3 770 0 1044 114 0 0 chr3 217580671 217580847 -9943731 + (GAATG)n Satellite Satellite 2 177 0 441 176 0 0 chr3 217580862 217580970 -9943608 + (GAATG)n Satellite Satellite 4 111 0 735 178 0 0 chr3 217580981 217581155 -9943423 + (GAATG)n Satellite Satellite 4 177 0 923 122 5 0 chr3 217581166 217581377 -9943201 + (GAATG)n Satellite Satellite 1 212 0 1161 122 0 6 chr3 217581393 217582042 -9942536 + (GAATG)n Satellite Satellite 2 810 0 1038 126 0 0 chr3 217582071 217582425 -9942153 + (GAATG)n Satellite Satellite 1 354 0 1102 126 1 3 chr3 217582437 217583140 -9941438 + (GAATG)n Satellite Satellite 2 880 0 758 168 0 14 chr3 217583158 217583515 -9941063 + (GAATG)n Satellite Satellite 1 351 0 814 142 6 6 chr3 217583527 217583703 -9940875 + (GAATG)n Satellite Satellite 4 179 0 756 158 0 0 chr3 217583714 217583885 -9940693 + (GAATG)n Satellite Satellite 2 172 0 930 147 4 0 chr3 217583899 217584144 -9940434 + (GAATG)n Satellite Satellite 1 246 0 1071 117 0 0 chr3 217584180 217584360 -9940218 + (GAATG)n Satellite Satellite 1 180 0 624 138 0 0 chr3 217584389 217584519 -9940059 + (GAATG)n Satellite Satellite 1 130 0 858 129 0 0 chr3 217584653 217584816 -9939762 + (CATTC)n Satellite Satellite 2 164 0 960 175 0 0 chr3 217584833 217585352 -9939226 + (CATTC)n Satellite Satellite 1 519 0 1061 146 3 0 chr3 217585378 217585777 -9938801 + (CATTC)n Satellite Satellite 1 400 0 249 98 0 0 chr3 217585803 217585844 -9938734 + (CATTC)n Satellite Satellite 2 42 0 996 128 0 0 chr3 217585857 217586036 -9938542 + (CATTC)n Satellite Satellite 1 179 0 1221 98 0 41 chr3 217586052 217586427 -9938151 + (CATTC)n Satellite Satellite 1 360 0 978 120 0 13 chr3 217586445 217586837 -9937741 + (CATTC)n Satellite Satellite 1 387 0 972 144 0 24 chr3 217586852 217587397 -9937181 + (CATTC)n Satellite Satellite 1 358 0 861 150 0 0 chr3 217587412 217587592 -9936986 + (CATTC)n Satellite Satellite 1 180 0 963 153 0 0 chr3 217587613 217587945 -9936633 + (CATTC)n Satellite Satellite 1 332 0 1047 130 0 19 chr3 217587956 217588555 -9936023 + (CATTC)n Satellite Satellite 1 587 0 1257 105 0 0 chr3 217588577 217588816 -9935762 + (CATTC)n Satellite Satellite 1 239 0 276 127 0 0 chr3 217588831 217588886 -9935692 + (CATTC)n Satellite Satellite 2 56 0 969 128 0 0 chr3 217588910 217589090 -9935488 + (CATTC)n Satellite Satellite 1 180 0 802 135 0 27 chr3 217589130 217589315 -9935263 + (CATTC)n Satellite Satellite 1 180 0 264 30 0 0 chr3 217589326 217589359 -9935219 + (CATTC)n Satellite Satellite 2 34 0 1011 107 0 0 chr3 217589371 217589540 -9935038 + (CATTC)n Satellite Satellite 2 170 0 912 133 0 0 chr3 217589560 217589740 -9934838 + (CATTC)n Satellite Satellite 1 180 0 772 119 7 7 chr3 217589761 217589912 -9934666 + (CATTC)n Satellite Satellite 2 152 0 1056 111 0 0 chr3 217589925 217590105 -9934473 + (CATTC)n Satellite Satellite 1 180 0 912 140 0 0 chr3 217590121 217590392 -9934186 + (CATTC)n Satellite Satellite 1 271 0 1128 120 0 2 chr3 217590410 217590950 -9933628 + (CATTC)n Satellite Satellite 1 539 0 1005 147 0 0 chr3 217590985 217591265 -9933313 + (CATTC)n Satellite Satellite 1 280 0 852 153 0 17 chr3 217591291 217591580 -9932998 + (CATTC)n Satellite Satellite 1 284 0 900 147 0 0 chr3 217591601 217591824 -9932754 + (CATTC)n Satellite Satellite 1 223 0 857 124 0 27 chr3 217591844 217592029 -9932549 + (CATTC)n Satellite Satellite 1 180 0 501 110 0 0 chr3 217592042 217592124 -9932454 + (CATTC)n Satellite Satellite 4 85 0 876 146 0 0 chr3 217592135 217592313 -9932265 + (CATTC)n Satellite Satellite 2 179 0 999 143 0 3 chr3 217592325 217592646 -9931932 + (CATTC)n Satellite Satellite 2 321 0 975 124 0 0 chr3 217592657 217592834 -9931744 + (CATTC)n Satellite Satellite 4 180 0 1038 107 0 0 chr3 217592866 217593043 -9931535 + (CATTC)n Satellite Satellite 3 179 0 384 71 0 0 chr3 217593055 217593111 -9931467 + (CATTC)n Satellite Satellite 2 57 0 908 129 6 0 chr3 217593122 217593292 -9931286 + (CATTC)n Satellite Satellite 4 174 0 714 158 0 0 chr3 217593304 217593468 -9931110 + (CATTC)n Satellite Satellite 2 165 0 291 136 0 0 chr3 217593489 217593548 -9931030 + (CATTC)n Satellite Satellite 2 60 0 927 166 0 3 chr3 217593575 217593923 -9930655 + (CATTC)n Satellite Satellite 3 348 0 1035 133 0 4 chr3 217593934 217594165 -9930413 + (CATTC)n Satellite Satellite 2 231 0 930 144 0 0 chr3 217594178 217594358 -9930220 + (CATTC)n Satellite Satellite 1 180 0 561 170 0 0 chr3 217594369 217594510 -9930068 + (CATTC)n Satellite Satellite 2 142 0 801 158 0 0 chr3 217594521 217594698 -9929880 + (CATTC)n Satellite Satellite 4 180 0 1005 140 0 14 chr3 217594728 217595103 -9929475 + (CATTC)n Satellite Satellite 1 369 0 1044 155 0 3 chr3 217595115 217596178 -9928400 + (CATTC)n Satellite Satellite 1 1059 0 711 179 0 0 chr3 217596204 217596383 -9928195 + (CATTC)n Satellite Satellite 2 180 0 809 158 4 0 chr3 217596394 217596672 -9927906 + (CATTC)n Satellite Satellite 1 279 0 904 105 0 53 chr3 217596702 217596892 -9927686 + (CATTC)n Satellite Satellite 1 180 0 999 139 0 16 chr3 217596903 217597267 -9927311 + (CATTC)n Satellite Satellite 2 359 0 1042 123 3 20 chr3 217597278 217597617 -9926961 + (CATTC)n Satellite Satellite 2 334 0 1070 95 6 0 chr3 217597632 217597811 -9926767 + (CATTC)n Satellite Satellite 1 180 0 966 118 0 0 chr3 217597827 217597997 -9926581 + (CATTC)n Satellite Satellite 2 171 0 1056 127 0 27 chr3 217598022 217598558 -9926020 + (CATTC)n Satellite Satellite 2 350 0 996 124 0 0 chr3 217598588 217598766 -9925812 + (CATTC)n Satellite Satellite 3 180 0 753 168 0 0 chr3 217598777 217598956 -9925622 + (CATTC)n Satellite Satellite 2 180 0 1077 142 0 0 chr3 217598971 217599451 -9925127 + (CATTC)n Satellite Satellite 1 480 0 705 164 0 0 chr3 217599472 217599631 -9924947 + (CATTC)n Satellite Satellite 2 160 0 948 121 0 0 chr3 217599642 217599815 -9924763 + (CATTC)n Satellite Satellite 2 174 0 764 127 0 53 chr3 217599827 217600016 -9924562 + (CATTC)n Satellite Satellite 2 180 0 1143 111 0 9 chr3 217600030 217600575 -9924003 + (CATTC)n Satellite Satellite 1 539 0 888 172 0 0 chr3 217600586 217600917 -9923661 + (CATTC)n Satellite Satellite 1 331 0 1782 101 25 0 chr3 217800945 217801221 -9723357 + L1MA9 LINE L1 6029 6311 -1 993 186 129 61 chr3 217801229 217801509 -9723069 + MLT1D LTR MaLR 206 504 -1 290 261 174 7 chr3 217801514 217801652 -9722926 - L2 LINE L2 -781 2533 2373 257 308 171 8 chr3 217802105 217802222 -9722356 + MIR3 SINE MIR 35 170 -38 226 283 20 30 chr3 217803264 217803363 -9721215 - MIR SINE MIR -46 216 119 2211 98 0 0 chr3 217803402 217803724 -9720854 + AluSx SINE Alu 1 322 0 481 102 0 0 chr3 217804115 217804174 -9720404 - AluS SINE Alu -232 80 22 4506 150 21 33 chr3 217805516 217805802 -9718776 + L1MB2 LINE L1 5411 5699 -472 2132 108 0 7 chr3 217805802 217806089 -9718489 - AluSg1 SINE Alu -24 285 1 4506 150 21 33 chr3 217806089 217806570 -9718008 + L1MB2 LINE L1 5699 6169 -2 22 35 0 0 chr3 217806573 217806602 -9717976 + AT_rich Low_complexity Low_complexity 1 29 0 2144 139 41 22 chr3 217807146 217807514 -9717064 + THE1C LTR MaLR 1 375 0 10224 114 37 49 chr3 217807514 217809109 -9715469 + THE1C-int LTR MaLR 1 1576 -4 2766 103 25 5 chr3 217809113 217809481 -9715097 + THE1C LTR MaLR 1 375 0 222 436 10 0 chr3 217810231 217810332 -9714246 - L2 LINE L2 -195 3077 2976 431 197 56 78 chr3 217810852 217810994 -9713584 + MLT1J1 LTR MaLR 1 139 -307 357 256 0 12 chr3 217811168 217811254 -9713324 + MLT1I LTR MaLR 318 402 -7 203 133 0 0 chr3 217811641 217811671 -9712907 + (TG)n Simple_repeat Simple_repeat 1 30 0 469 241 9 17 chr3 217812196 217812312 -9712266 - MIR3 SINE MIR -20 188 74 225 243 9 122 chr3 217812384 217812491 -9712087 - MIR SINE MIR -66 196 102 330 158 18 0 chr3 217812510 217812567 -9712011 - L2 LINE L2 0 3313 3256 247 298 69 61 chr3 217813740 217813871 -9710707 - L2 LINE L2 -5 3267 3136 229 298 36 0 chr3 217814280 217814364 -9710214 - MIR SINE MIR -54 208 122 391 266 95 56 chr3 217814855 217815107 -9709471 + MIR SINE MIR 1 262 0 531 0 0 0 chr3 217815491 217815550 -9709028 + (TG)n Simple_repeat Simple_repeat 2 60 0 215 272 161 62 chr3 217816027 217816189 -9708389 + MIR SINE MIR 15 192 -70 422 368 56 13 chr3 217816248 217816479 -9708099 + MIR SINE MIR 9 249 -13 197 143 29 0 chr3 217817037 217817072 -9707506 - MIR3 SINE MIR -18 190 155 26 30 0 0 chr3 217817775 217817808 -9706770 + AT_rich Low_complexity Low_complexity 1 33 0 638 150 222 0 chr3 217818049 217818202 -9706376 + MER53 DNA DNA 1 187 -2 405 279 48 24 chr3 217818273 217818438 -9706140 - MIR SINE MIR -46 216 48 1195 98 0 0 chr3 217818458 217818611 -9705967 - AluSp SINE Alu -24 289 137 2560 225 75 21 chr3 217818633 217819394 -9705184 - L1MC4a LINE L1 0 7808 7007 187 352 0 45 chr3 217819526 217819614 -9704964 - L2 LINE L2 -1 3312 3229 375 277 21 0 chr3 217820724 217820818 -9703760 - MER94 DNA DNA -4 130 35 240 243 0 0 chr3 217821000 217821074 -9703504 + (TA)n Simple_repeat Simple_repeat 1 74 0 435 310 21 0 chr3 217821575 217821717 -9702861 + MIR3 SINE MIR 64 208 0 1781 153 132 9 chr3 217823031 217823365 -9701213 + THE1C LTR MaLR 1 375 0 331 165 63 51 chr3 217823798 217823877 -9700701 + MIR SINE MIR 65 144 -64 353 289 14 104 chr3 217823989 217824037 -9700541 - MIR3 SINE MIR -65 143 92 1701 186 3 16 chr3 217824037 217824348 -9700230 - AluJo SINE Alu -3 309 3 353 289 14 104 chr3 217824348 217824510 -9700068 - MIR3 SINE MIR -116 92 1 241 321 123 0 chr3 217824823 217824929 -9699649 - L3 LINE CR1 -3 1574 1456 355 231 66 0 chr3 217825259 217825350 -9699228 + MER103 DNA DNA 69 165 -1 378 320 11 39 chr3 217825430 217825611 -9698967 + L2 LINE L2 2916 3091 -181 226 290 32 0 chr3 217826078 217826140 -9698438 - L2 LINE L2 -17 3255 3192 347 331 54 8 chr3 217826525 217826655 -9697923 - L2 LINE L2 0 3272 3137 290 267 242 37 chr3 217826625 217826786 -9697792 - MIR3 SINE MIR -11 197 4 * 477 0 0 0 chr3 217826930 217826983 -9697595 + (TG)n Simple_repeat Simple_repeat 2 54 0 207 98 73 0 chr3 217827037 217827078 -9697500 + A-rich Low_complexity Low_complexity 2 45 0 946 303 69 11 chr3 217828007 217828357 -9696221 - MLT1J2 LTR MaLR -18 432 63 333 291 57 35 chr3 217828760 217828901 -9695677 - MIR SINE MIR -70 192 49 474 285 28 45 chr3 217829888 217830067 -9694511 + MIR SINE MIR 14 189 -73 489 318 117 25 chr3 217830142 217830579 -9693999 - L3 LINE CR1 -57 1520 1044 252 0 0 0 chr3 217830995 217831023 -9693555 + (TTCA)n Simple_repeat Simple_repeat 3 30 0 194 222 0 20 chr3 217831032 217831071 -9693507 - L2 LINE L2 -31 3282 3204 229 298 53 53 chr3 217832815 217832946 -9691632 - MIR SINE MIR -41 221 91 275 282 153 0 chr3 217833784 217833869 -9690709 - L2 LINE L2 -12 3260 3163 561 381 90 14 chr3 217834281 217834714 -9689864 + L3 LINE CR1 241 706 -871 2281 96 0 0 chr3 217834715 217835007 -9689571 + AluSc SINE Alu 1 292 -17 217 288 129 69 chr3 217835062 217835295 -9689283 + MIR SINE MIR 3 249 -13 204 268 59 72 chr3 217835573 217835726 -9688852 + L3 LINE CR1 1247 1397 -180 227 380 109 0 chr3 217836238 217836330 -9688248 + L2 LINE L2 3116 3217 -55 776 259 31 18 chr3 217836560 217836784 -9687794 - MIR SINE MIR -30 232 6 379 347 102 40 chr3 217837901 217838175 -9686403 - L2 LINE L2 -41 3231 2941 2205 108 0 0 chr3 217839823 217840109 -9684469 - AluSg SINE Alu -19 291 6 223 261 151 42 chr3 217840535 217840654 -9683924 + MIR3 SINE MIR 58 189 -19 999 292 70 36 chr3 217842333 217842775 -9681803 - LTR16A1 LTR ERVL 0 457 1 223 238 163 62 chr3 217843283 217843363 -9681215 - MIR SINE MIR -15 193 106 1387 266 76 74 chr3 217843391 217843508 -9681070 - L2 LINE L2 -1 3312 3197 2313 94 0 3 chr3 217843508 217843805 -9680773 - AluSx SINE Alu -16 296 1 1387 266 76 74 chr3 217843805 217844415 -9680163 - L2 LINE L2 -116 3197 2549 742 216 173 0 chr3 217844425 217844610 -9679968 + MLT1D LTR MaLR 1 217 -288 1845 148 68 3 chr3 217844638 217844963 -9679615 + L1MA9 LINE L1 5717 6062 -250 216 86 0 0 chr3 217845105 217845140 -9679438 + (T)n Simple_repeat Simple_repeat 1 35 0 403 297 48 0 chr3 217845247 217845392 -9679186 - HsTC2 DNA Tc2 -1524 374 223 297 51 0 0 chr3 217846017 217846056 -9678522 + (TG)n Simple_repeat Simple_repeat 1 39 0 220 217 43 14 chr3 217847499 217847568 -9677010 + MIR SINE MIR 76 146 -116 21 0 0 0 chr3 217847652 217847673 -9676905 + AT_rich Low_complexity Low_complexity 1 21 0 252 319 99 79 chr3 217847833 217848179 -9676399 - L2 LINE L2 -1 3312 2954 2065 126 3 10 chr3 217848179 217848480 -9676098 - AluSg SINE Alu -11 299 1 252 319 99 79 chr3 217848480 217848565 -9676013 - L2 LINE L2 -359 2954 2872 525 277 14 7 chr3 217848978 217849126 -9675452 + MIR SINE MIR 109 257 -5 2180 117 0 3 chr3 217849177 217849485 -9675093 + AluSq SINE Alu 1 307 -6 221 250 0 36 chr3 217849850 217849906 -9674672 + MIR3 SINE MIR 103 156 -52 2250 119 3 0 chr3 217850339 217850649 -9673929 - AluSx SINE Alu -1 311 1 563 237 36 29 chr3 217851609 217851748 -9672830 - MER5A DNA MER1_type -3 186 47 183 234 43 121 chr3 217852590 217852731 -9671847 - MIR3 SINE MIR -6 202 73 768 206 79 0 chr3 217853695 217853860 -9670718 - MER45A DNA AcHobo 0 178 1 462 317 7 28 chr3 217854057 217854202 -9670376 - MIR3 SINE MIR -62 146 5 2212 84 0 3 chr3 217855367 217855653 -9668925 - AluSx SINE Alu -27 285 1 223 324 47 47 chr3 217855919 217856067 -9668511 - MIR SINE MIR -68 194 47 205 306 10 61 chr3 217857433 217857531 -9667047 - MIR SINE MIR -114 148 56 288 355 101 14 chr3 217857554 217857692 -9666886 - L2 LINE L2 -2 3270 3121 255 103 0 0 chr3 217859373 217859412 -9665166 + (TG)n Simple_repeat Simple_repeat 2 40 0 1803 88 0 0 chr3 217859517 217859745 -9664833 - AluSg/x SINE Alu 0 312 85 398 291 50 14 chr3 217859774 217859915 -9664663 - MIR3 SINE MIR -26 182 37 203 250 0 21 chr3 217859984 217860032 -9664546 + L3 LINE CR1 1518 1564 -13 629 300 35 18 chr3 217860373 217860656 -9663922 + Charlie8 DNA MER1_type 1 288 -2129 188 437 101 0 chr3 217861184 217861342 -9663236 - L2 LINE L2 -3 3269 3096 21 0 0 0 chr3 217861927 217861948 -9662630 + AT_rich Low_complexity Low_complexity 1 21 0 1743 249 120 50 chr3 217862625 217863577 -9661001 - L2 LINE L2 -61 3252 2229 242 247 74 0 chr3 217863577 217863658 -9660920 - L1MC4 LINE L1 -1339 6703 6617 264 200 0 0 chr3 217863660 217863725 -9660853 + (TA)n Simple_repeat Simple_repeat 2 66 0 500 289 15 0 chr3 217863725 217863860 -9660718 - L2 LINE L2 -1092 2222 2086 550 267 262 14 chr3 217864085 217864429 -9660149 - L2 LINE L2 -1222 2092 1664 1985 128 35 3 chr3 217864435 217864725 -9659853 + AluSx SINE Alu 1 299 -13 201 310 132 46 chr3 217864774 217864948 -9659630 - MIR SINE MIR -71 191 3 317 303 43 74 chr3 217865774 217865936 -9658642 + L2 LINE L2 3116 3272 0 2075 125 54 26 chr3 217866076 217866428 -9658150 - THE1B LTR MaLR -2 362 1 11781 100 3 0 chr3 217866428 217868003 -9656575 - THE1B-int LTR MaLR 0 1580 1 2032 128 81 26 chr3 217868003 217868348 -9656230 - THE1B LTR MaLR 0 364 1 318 247 87 70 chr3 217868665 217868918 -9655660 + L1ME LINE L1 5505 5758 -363 1318 106 23 0 chr3 217868979 217869197 -9655381 - L1MA9 LINE L1 -2 6310 6088 7997 87 5 7 chr3 217869255 217870329 -9654249 - MER11C LTR ERVK 0 1071 1 692 254 55 6 chr3 217870347 217870528 -9654050 + MIR SINE MIR 64 253 -9 1756 162 0 33 chr3 217871413 217871715 -9652863 - AluJb SINE Alu -20 292 1 295 287 97 5 chr3 217871948 217872164 -9652414 - L1ME4a LINE L1 -105 6016 5781 1737 157 23 10 chr3 217873175 217873474 -9651104 - AluJb SINE Alu -9 303 1 2184 103 3 41 chr3 217873487 217873807 -9650771 - AluSg SINE Alu -2 308 1 424 258 97 32 chr3 217873807 217873957 -9650621 - MIR SINE MIR -72 190 31 565 269 170 38 chr3 217875300 217875642 -9648936 - L1ME4a LINE L1 -25 6096 5710 191 345 81 0 chr3 217875869 217875956 -9648622 + L3 LINE CR1 1484 1577 0 181 280 20 80 chr3 217876840 217876940 -9647638 - MIR SINE MIR -50 212 119 383 327 67 61 chr3 217878526 217878691 -9645887 - L2 LINE L2 0 3272 3107 2454 193 8 4 chr3 217878789 217879323 -9645255 - L1M2 LINE L1 -4007 3161 2626 1112 235 5 0 chr3 217879323 217879536 -9645042 - AluJo SINE Alu -9 303 90 9970 226 22 41 chr3 217879537 217882212 -9642366 - L1M2 LINE L1 -4522 2646 1 427 306 42 35 chr3 217882287 217882431 -9642147 + MIR3 SINE MIR 42 186 -22 271 246 69 54 chr3 217882491 217882537 -9642041 + L1ME3A LINE L1 6034 6078 -92 2668 87 3 14 chr3 217882537 217882905 -9641673 - THE1B LTR MaLR 0 364 1 271 246 69 54 chr3 217882905 217882988 -9641590 + L1ME3A LINE L1 6078 6165 -5 230 283 0 0 chr3 217884686 217884739 -9639839 - L2 LINE L2 -2 3270 3218 370 364 57 29 chr3 217884806 217885015 -9639563 - L2 LINE L2 0 3272 3058 1621 91 9 14 chr3 217885739 217885959 -9638619 + AluSq SINE Alu 1 219 -94 750 118 0 29 chr3 217885959 217886095 -9638483 + AluSg/x SINE Alu 181 312 0 280 303 74 56 chr3 217886123 217886285 -9638293 - MIR3 SINE MIR -38 170 6 262 296 20 61 chr3 217886921 217886998 -9637580 + MIR3 SINE MIR 69 143 -65 1211 163 40 128 chr3 217886998 217887398 -9637180 + MLT1A1 LTR MaLR 1 365 0 262 296 20 61 chr3 217887398 217887418 -9637160 + MIR3 SINE MIR 143 162 -46 2233 103 0 10 chr3 217887831 217888132 -9636446 - AluSx SINE Alu -14 298 1 462 210 7 36 chr3 217888774 217888912 -9635666 + ORSL DNA AcHobo 139 272 -3 319 342 31 52 chr3 217889130 217889323 -9635255 + MIR3 SINE MIR 15 203 -5 307 326 133 19 chr3 217889678 217889942 -9634636 - L1ME4a LINE L1 -224 5897 5604 2243 102 7 3 chr3 217889942 217890245 -9634333 + AluSc SINE Alu 1 304 -5 294 29 0 0 chr3 217891078 217891130 -9633448 + (CA)n Simple_repeat Simple_repeat 1 87 0 294 29 0 0 chr3 217891130 217891165 -9633413 + (CA)n Simple_repeat Simple_repeat 1 35 0 261 227 154 9 chr3 217891341 217891451 -9633127 + MIR SINE MIR 83 208 -54 358 243 29 52 chr3 217891532 217891668 -9632910 - MER94 DNA DNA -1 133 1 24 0 0 0 chr3 217891989 217892013 -9632565 + AT_rich Low_complexity Low_complexity 1 24 0 255 230 11 46 chr3 217892048 217892135 -9632443 - L1ME4a LINE L1 -71 6050 5967 678 139 22 7 chr3 217892194 217892331 -9632247 + CT-rich Low_complexity Low_complexity 2 140 0 479 299 97 26 chr3 217892334 217892602 -9631976 - L1MC4a LINE L1 -1861 5947 5661 1932 170 0 0 chr3 217892683 217892983 -9631595 - AluJb SINE Alu -12 300 1 273 163 0 0 chr3 217892991 217893040 -9631538 + (TG)n Simple_repeat Simple_repeat 1 49 0 337 302 81 13 chr3 217893840 217893989 -9630589 - MIR SINE MIR -29 233 75 1116 306 51 37 chr3 217894997 217895641 -9628937 - MLT2F LTR ERVL -10 653 1 382 291 21 122 chr3 217895709 217895898 -9628680 - MIR SINE MIR -57 151 14 282 242 16 0 chr3 217896787 217896849 -9627729 - MER5A DNA MER1_type -118 71 9 212 241 130 0 chr3 217896944 217896998 -9627580 - MIR SINE MIR -105 103 43 269 241 83 0 chr3 217897336 217897444 -9627134 - L1ME4a LINE L1 -267 5854 5738 810 306 28 22 chr3 217899838 217900302 -9624276 - L1MC4a LINE L1 -1780 6028 5562 805 236 44 6 chr3 217900735 217900917 -9623661 + MER5A DNA MER1_type 1 189 0 357 290 99 0 chr3 217902687 217902818 -9621760 + MIR SINE MIR 112 255 -7 200 229 29 0 chr3 217904079 217904149 -9620429 + (CAA)n Simple_repeat Simple_repeat 1 72 0 2312 76 0 13 chr3 217904296 217904598 -9619980 - AluY SINE Alu -13 298 1 182 285 152 25 chr3 217904773 217904931 -9619647 - MIR SINE MIR -26 236 59 212 329 116 7 chr3 217905067 217905222 -9619356 - L2 LINE L2 -453 2861 2690 356 275 0 9 chr3 217905225 217905334 -9619244 - MER46C DNA MER2_type -2 336 229 24 32 0 0 chr3 217905701 217905732 -9618846 + AT_rich Low_complexity Low_complexity 1 31 0 267 256 0 98 chr3 217906186 217906268 -9618310 + MIR SINE MIR 21 94 -168 21 57 0 0 chr3 217906451 217906486 -9618092 + AT_rich Low_complexity Low_complexity 1 35 0 3304 79 0 13 chr3 217906618 217907075 -9617503 - L1PA13 LINE L1 -6 6157 5707 267 308 39 0 chr3 217907421 217907499 -9617079 - MIR SINE MIR -75 187 107 332 286 87 24 chr3 217907922 217908137 -9616441 - MIR SINE MIR -39 223 4 597 235 142 31 chr3 217908670 217908832 -9615746 + MER5A DNA MER1_type 4 183 -6 206 312 140 76 chr3 217908948 217909342 -9615236 + L2 LINE L2 2830 3248 -24 377 298 99 25 chr3 217909851 217910012 -9614566 + MIR SINE MIR 60 232 -30 22 56 0 0 chr3 217910035 217910071 -9614507 + AT_rich Low_complexity Low_complexity 1 36 0 456 319 106 74 chr3 217910071 217910384 -9614194 - L2 LINE L2 0 3272 2942 2156 97 4 0 chr3 217910384 217910696 -9613882 + AluSc SINE Alu 1 313 0 456 319 106 74 chr3 217910696 217910879 -9613699 - L2 LINE L2 -330 2942 2766 382 250 103 73 chr3 217911048 217911109 -9613469 - MER63A DNA MER1_type -1478 210 152 2583 59 0 0 chr3 217911109 217911414 -9613164 - AluY SINE Alu -6 305 1 382 250 103 73 chr3 217911414 217911556 -9613022 - MER63A DNA MER1_type -1536 152 1 3120 220 20 63 chr3 217912070 217913241 -9611337 + L1M4 LINE L1 2367 3486 -2660 764 195 10 92 chr3 217913256 217913451 -9611127 + AluJo SINE Alu 44 222 -90 27 0 0 0 chr3 217913900 217913927 -9610651 + AT_rich Low_complexity Low_complexity 1 27 0 242 190 35 0 chr3 217913933 217913991 -9610587 + AluJo SINE Alu 228 287 -15 2139 99 3 0 chr3 217914023 217914342 -9610236 + AluSx SINE Alu 1 320 0 2940 235 40 29 chr3 217914369 217915516 -9609062 + L1M4 LINE L1 3544 4703 -1443 199 267 228 10 chr3 217916479 217916580 -9607998 + MIR SINE MIR 25 147 -61 431 248 120 10 chr3 217916638 217916831 -9607747 + L2 LINE L2 2803 3019 -294 393 246 134 30 chr3 217916832 217916966 -9607612 + L2 LINE L2 3158 3305 -8 195 184 0 0 chr3 217917449 217917487 -9607091 + (TA)n Simple_repeat Simple_repeat 2 39 0 750 307 14 2 chr3 217917689 217917933 -9606645 - MIR SINE MIR -2 260 13 311 280 43 11 chr3 217917950 217918043 -9606535 + MIR SINE MIR 155 250 -12 285 51 0 0 chr3 217918129 217918168 -9606410 + (TG)n Simple_repeat Simple_repeat 2 40 0 351 44 0 0 chr3 217919345 217919390 -9605188 + (TG)n Simple_repeat Simple_repeat 1 45 0 189 0 0 0 chr3 217920051 217920072 -9604506 + (ATTG)n Simple_repeat Simple_repeat 4 24 0 1675 176 0 28 chr3 217920074 217920364 -9604214 - AluJo SINE Alu -30 282 1 180 270 16 32 chr3 217920410 217920473 -9604105 - L2 LINE L2 -213 3059 2998 276 247 0 0 chr3 217920543 217920620 -9603958 - L1ME4a LINE L1 -59 6456 6380 486 327 59 77 chr3 217921164 217921758 -9602820 - L2 LINE L2 -371 2943 2361 338 329 56 12 chr3 217921922 217922083 -9602495 + MIR SINE MIR 24 191 -71 199 271 106 0 chr3 217922823 217922908 -9601670 + MIR SINE MIR 157 250 -12 269 289 21 10 chr3 217922910 217923007 -9601571 + CT-rich Low_complexity Low_complexity 3 100 0 508 283 46 12 chr3 217923136 217923309 -9601269 - MIR SINE MIR -50 212 34 267 211 189 32 chr3 217923344 217923439 -9601139 - L2 LINE L2 0 3313 3204 375 105 0 0 chr3 217923439 217923496 -9601082 + (CA)n Simple_repeat Simple_repeat 2 58 0 209 316 13 0 chr3 217923858 217923937 -9600641 - L2 LINE L2 -578 2736 2657 203 356 10 40 chr3 217924364 217924465 -9600113 + MIR3 SINE MIR 2 99 -109 2427 113 6 0 chr3 217925270 217925623 -9598955 - THE1A LTR MaLR 0 355 1 221 338 47 95 chr3 217925680 217925828 -9598750 - L2 LINE L2 -173 3099 2959 238 303 146 0 chr3 217926146 217926235 -9598343 + L2 LINE L2 3140 3241 -31 23 78 0 0 chr3 217926395 217926446 -9598132 + AT_rich Low_complexity Low_complexity 1 51 0 2279 143 31 8 chr3 217926584 217926940 -9597638 - THE1B LTR MaLR 0 364 1 723 286 78 52 chr3 217927120 217927661 -9596917 - L1ME4a LINE L1 -302 6213 5659 2495 111 6 0 chr3 217927773 217928126 -9596452 + THE1A LTR MaLR 1 355 0 21 57 0 0 chr3 217928351 217928386 -9596192 + AT_rich Low_complexity Low_complexity 1 35 0 937 274 16 85 chr3 217928596 217929209 -9595369 - L1ME4a LINE L1 -2301 4239 3669 1657 203 85 3 chr3 217929215 217929555 -9595023 - MSTA LTR MaLR -12 416 49 3578 175 35 4 chr3 217929556 217930248 -9594330 - MSTA-int LTR MaLR -938 713 1 2482 135 48 19 chr3 217930248 217930319 -9594259 - MSTA LTR MaLR 0 428 361 2130 114 38 3 chr3 217930319 217930609 -9593969 + AluSx SINE Alu 2 301 -11 2482 135 48 19 chr3 217930609 217930953 -9593625 - MSTA LTR MaLR -67 361 1 2203 106 7 3 chr3 217931097 217931390 -9593188 - AluSp SINE Alu -17 296 3 1916 243 82 17 chr3 217931390 217932179 -9592399 - L1MDa LINE L1 -2994 3546 2689 2412 141 6 0 chr3 217932179 217932541 -9592037 + THE1B LTR MaLR 1 364 0 1916 243 82 17 chr3 217932541 217932645 -9591933 - L1MDa LINE L1 -3851 2689 2593 1327 251 100 38 chr3 217932654 217933684 -9590894 - L1MDa LINE L1 -4369 2171 1078 257 161 0 48 chr3 217933888 217933950 -9590628 - L1M4 LINE L1 -2211 4171 4113 331 346 57 65 chr3 217933974 217934448 -9590130 - L1M4 LINE L1 -2302 4080 3611 316 225 107 64 chr3 217934802 217934989 -9589589 - L1M4 LINE L1 -3196 3186 2992 219 192 19 0 chr3 217935295 217935347 -9589231 + (TA)n Simple_repeat Simple_repeat 2 54 0 452 301 57 28 chr3 217935478 217935770 -9588808 - L1M4 LINE L1 -3761 2621 2334 180 0 0 0 chr3 217936918 217936938 -9587640 + (A)n Simple_repeat Simple_repeat 1 20 0 198 345 97 9 chr3 217937062 217937175 -9587403 - MIR SINE MIR -65 143 21 214 143 41 0 chr3 217937221 217937270 -9587308 + CT-rich Low_complexity Low_complexity 1 51 0 8135 62 2 1 chr3 217937541 217938509 -9586069 - LTR5 LTR ERVK 0 969 1 283 285 14 76 chr3 217938791 217938935 -9585643 + MIR SINE MIR 57 191 -71 28593 114 24 63 chr3 217939220 217945621 -9578957 - L1PA7 LINE L1 -3 6151 12 2076 127 10 16 chr3 217945633 217945940 -9578638 - AluSx SINE Alu -7 305 1 568 274 47 70 chr3 217946222 217946437 -9578141 + MIR SINE MIR 32 241 -21 208 305 107 92 chr3 217947692 217948030 -9576548 - L2 LINE L2 -1 3271 2929 187 371 42 39 chr3 217948105 217948364 -9576214 - L2 LINE L2 -510 2804 2545 213 151 0 0 chr3 217948373 217948426 -9576152 + (TATATG)n Simple_repeat Simple_repeat 3 55 0 372 300 31 8 chr3 217948604 217948734 -9575844 - L2 LINE L2 -4 3268 3136 1230 224 102 54 chr3 217948815 217949356 -9575222 - MLT1F1 LTR MaLR -6 561 2 248 345 129 29 chr3 217949404 217949575 -9575003 - L2 LINE L2 -213 3059 2872 559 304 7 7 chr3 217950235 217950383 -9574195 + MIR3 SINE MIR 32 179 -29 611 314 76 36 chr3 217951663 217952137 -9572441 + MLT1J LTR MaLR 18 510 -1 379 269 205 0 chr3 217952241 217952412 -9572166 + MIR SINE MIR 46 251 -11 1493 168 82 24 chr3 217953195 217953523 -9571055 + MER7A DNA MER2_type 1 345 -1 183 80 0 0 chr3 217955261 217955286 -9569292 + (T)n Simple_repeat Simple_repeat 1 25 0 197 294 33 65 chr3 217955858 217955950 -9568628 - MIR3 SINE MIR -7 201 113 393 22 0 0 chr3 217956187 217956233 -9568345 + (TTC)n Simple_repeat Simple_repeat 2 47 0 377 325 80 19 chr3 217956836 217957048 -9567530 - MIR SINE MIR -28 234 10 186 43 0 0 chr3 217957059 217957082 -9567496 + (TAA)n Simple_repeat Simple_repeat 2 24 0 252 256 24 24 chr3 217957241 217957323 -9567255 - MIR SINE MIR -66 142 61 208 260 117 13 chr3 217957860 217957937 -9566641 - MIR SINE MIR -84 124 40 379 276 51 60 chr3 217957942 217958159 -9566419 + MIR SINE MIR 15 229 -33 218 274 143 0 chr3 217958480 217958564 -9566014 + MIR SINE MIR 30 125 -83 201 116 70 0 chr3 217958769 217958812 -9565766 + CT-rich Low_complexity Low_complexity 1 46 0 764 104 21 14 chr3 217958812 217958956 -9565622 + (TTCC)n Simple_repeat Simple_repeat 3 147 0 437 352 41 18 chr3 217959127 217959346 -9565232 - L3 LINE CR1 -59 1518 1295 284 288 0 15 chr3 217959672 217959738 -9564840 + MIR SINE MIR 37 101 -107 23 33 0 0 chr3 217961027 217961057 -9563521 + AT_rich Low_complexity Low_complexity 1 30 0 402 21 0 0 chr3 217961104 217961151 -9563427 + (TG)n Simple_repeat Simple_repeat 1 47 0 213 346 121 17 chr3 217961702 217961933 -9562645 - L2 LINE L2 -337 2977 2723 459 337 115 15 chr3 217963906 217964244 -9560334 - L3 LINE CR1 -13 1564 1193 1082 235 5 0 chr3 217965181 217965398 -9559180 - MER58A DNA MER1_type -2 222 5 236 346 39 16 chr3 217965457 217965584 -9558994 + L3 LINE CR1 631 760 -817 745 286 28 24 chr3 217965588 217965840 -9558738 + MIR SINE MIR 3 255 -7 243 229 38 38 chr3 217966396 217966501 -9558077 + (TGAA)n Simple_repeat Simple_repeat 3 107 0 541 282 43 15 chr3 217966805 217967007 -9557571 + MIR SINE MIR 3 204 -58 788 228 84 8 chr3 217967214 217967451 -9557127 - MIR SINE MIR -3 259 5 23 33 0 0 chr3 217967779 217967809 -9556769 + AT_rich Low_complexity Low_complexity 1 30 0 1756 137 4 4 chr3 217968041 217968304 -9556274 - AluSx SINE Alu -4 308 46 228 226 32 0 chr3 217968684 217968777 -9555801 + CT-rich Low_complexity Low_complexity 1 96 0 413 253 40 53 chr3 217969888 217970038 -9554540 - MIR SINE MIR -64 198 51 4008 41 0 6 chr3 217970369 217970862 -9553716 - L1PA4 LINE L1 0 6155 5666 3844 30 4 2 chr3 217970862 217971363 -9553215 + L1P LINE L1 4896 5397 -749 247 268 154 8 chr3 217971658 217971781 -9552797 + MER103 DNA DNA 25 165 -1 317 327 62 12 chr3 217971831 217972000 -9552578 - MIR SINE MIR -73 189 3 652 454 142 12 chr3 217972189 217972612 -9551966 + L2 LINE L2 2827 3304 -9 2627 61 0 0 chr3 217973522 217973833 -9550745 - AluY SINE Alu 0 311 1 61 15 0 0 chr3 217974094 217974162 -9550416 + AT_rich Low_complexity Low_complexity 1 68 0 241 132 57 0 chr3 217974178 217974231 -9550347 + GA-rich Low_complexity Low_complexity 1 56 0 213 195 0 0 chr3 217974233 217974274 -9550304 + (TG)n Simple_repeat Simple_repeat 2 42 0 288 368 68 46 chr3 217975266 217975589 -9548989 + L2 LINE L2 2305 2634 -680 601 336 22 18 chr3 217975599 217975828 -9548750 + MIR SINE MIR 12 241 -21 270 0 0 0 chr3 217976394 217976424 -9548154 + (TG)n Simple_repeat Simple_repeat 1 30 0 25 0 0 0 chr3 217977021 217977046 -9547532 + AT_rich Low_complexity Low_complexity 1 25 0 2129 112 3 3 chr3 217977094 217977389 -9547189 + AluSg SINE Alu 1 295 -15 25 51 0 0 chr3 217977791 217977830 -9546748 + AT_rich Low_complexity Low_complexity 1 39 0 1233 195 72 0 chr3 217978004 217978240 -9546338 + Tigger7 DNA MER2_type 10 262 -2225 519 213 0 28 chr3 217978239 217978347 -9546231 + Tigger7 DNA MER2_type 2387 2491 0 * 30 0 0 0 chr3 217978770 217978800 -9545778 + AT_rich Low_complexity Low_complexity 1 30 0 226 309 43 32 chr3 217979153 217979247 -9545331 + MIR SINE MIR 24 118 -90 440 265 35 50 chr3 217979319 217979519 -9545059 + MIR3 SINE MIR 12 208 0 1529 87 53 10 chr3 217979800 217980008 -9544570 - AluSx SINE Alu -95 217 1 196 250 83 0 chr3 217980897 217980957 -9543621 + L2 LINE L2 2995 3059 -254 2277 114 0 0 chr3 217981067 217981373 -9543205 - AluSx SINE Alu -6 306 1 526 295 58 0 chr3 217981927 217982100 -9542478 + MIR3 SINE MIR 16 198 -10 228 260 55 14 chr3 217982614 217982687 -9541891 - MIR SINE MIR -69 193 118 1188 206 7 14 chr3 217985313 217985605 -9538973 + L1MC4 LINE L1 6788 7077 -965 207 0 0 0 chr3 217985735 217985758 -9538820 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 271 162 114 48 chr3 217986224 217986329 -9538249 - HAL1b LINE L1 -5 1343 1232 23 54 0 0 chr3 217986447 217986484 -9538094 + AT_rich Low_complexity Low_complexity 1 37 0 638 262 30 6 chr3 217986663 217986831 -9537747 + LTR33 LTR ERVL 1 172 -349 432 247 53 41 chr3 217986943 217987113 -9537465 + LTR33 LTR ERVL 345 516 -5 308 262 66 25 chr3 217987189 217987311 -9537267 - HAL1 LINE L1 -134 2373 2247 435 273 107 0 chr3 217987864 217988014 -9536564 + L2 LINE L2 2373 2538 -776 195 315 67 34 chr3 217988030 217988119 -9536459 - MIR SINE MIR -100 162 71 283 284 30 82 chr3 217989150 217989284 -9535294 + MIR3 SINE MIR 15 141 -67 230 282 103 40 chr3 217989669 217989843 -9534735 - MIR SINE MIR -15 247 63 197 328 47 16 chr3 217989990 217990054 -9534524 + MIR3 SINE MIR 103 168 -40 2081 140 19 40 chr3 217991447 217991819 -9532759 + THE1B LTR MaLR 1 364 0 212 306 60 37 chr3 217992363 217992497 -9532081 - L2 LINE L2 0 3272 3136 235 357 71 9 chr3 217992618 217992730 -9531848 - L2 LINE L2 0 3272 3154 247 270 53 92 chr3 217992777 217992929 -9531649 + MARNA DNA Mariner 387 532 -54 181 260 130 20 chr3 217992982 217993082 -9531496 + MIR SINE MIR 32 142 -66 195 42 0 0 chr3 217993692 217993716 -9530862 + (A)n Simple_repeat Simple_repeat 1 24 0 990 211 20 5 chr3 217993809 217994013 -9530565 - MER6B DNA MER2_type -3 207 1 2372 73 3 0 chr3 217994706 217995007 -9529571 - AluY SINE Alu -9 302 1 207 328 176 16 chr3 217995018 217995143 -9529435 + MIR SINE MIR 53 197 -65 366 243 50 43 chr3 217995180 217995320 -9529258 + MIR SINE MIR 122 262 0 218 283 35 55 chr3 217995545 217995690 -9528888 - MIR SINE MIR -50 212 71 185 195 122 85 chr3 217995778 217995860 -9528718 + L2 LINE L2 3157 3241 -31 331 178 10 109 chr3 217996032 217996133 -9528445 + L1ME4a LINE L1 5985 6075 -46 476 278 108 17 chr3 217996224 217996400 -9528178 + MIR SINE MIR 66 257 -5 225 0 0 0 chr3 217998610 217998635 -9525943 + (CA)n Simple_repeat Simple_repeat 2 26 0 918 59 0 0 chr3 217998662 217998780 -9525798 - L1PA5 LINE L1 -3 6151 6034 339 330 126 69 chr3 217998826 217999174 -9525404 + L2 LINE L2 2903 3270 -2 243 0 0 0 chr3 217999303 217999330 -9525248 + (A)n Simple_repeat Simple_repeat 1 27 0 180 0 0 0 chr3 217999720 217999740 -9524838 + (A)n Simple_repeat Simple_repeat 1 20 0 230 359 29 10 chr3 218000331 218000434 -9524144 + L3 LINE CR1 1019 1123 -454 252 262 29 58 chr3 218000434 218000537 -9524041 + L3 LINE CR1 1101 1200 -377 2042 163 0 0 chr3 218000781 218001088 -9523490 - AluSq SINE Alu -6 307 1 266 320 23 23 chr3 218001167 218001295 -9523283 + MER115 DNA AcHobo 32 159 -534 366 203 203 57 chr3 218001327 218001450 -9523128 + MER5A DNA MER1_type 38 178 -11 592 380 10 24 chr3 218001461 218001758 -9522820 + MER115 DNA AcHobo 157 449 -244 187 273 23 0 chr3 218002040 218002084 -9522494 - MER5A DNA MER1_type -73 116 72 357 215 97 11 chr3 218002230 218002323 -9522255 - MIR SINE MIR -63 145 45 409 278 164 6 chr3 218003996 218004162 -9520416 + MIR SINE MIR 36 230 -32 1936 110 0 8 chr3 218004741 218005005 -9519573 + AluY SINE Alu 47 308 -3 215 309 132 15 chr3 218005041 218005177 -9519401 - MIR SINE MIR -16 246 95 185 316 18 0 chr3 218005910 218005967 -9518611 + L2 LINE L2 3214 3271 -1 258 346 32 32 chr3 218007082 218007238 -9517340 - MIR3 SINE MIR -23 185 30 247 182 0 36 chr3 218007332 218007387 -9517191 - L2 LINE L2 0 3313 3261 326 364 67 32 chr3 218007521 218007864 -9516714 - L3b LINE CR1 -64 1519 1165 313 344 51 13 chr3 218007849 218008006 -9516572 - MIR3 SINE MIR -4 204 42 * 272 225 67 45 chr3 218009384 218009473 -9515105 + MIR3 SINE MIR 112 202 -6 237 323 32 32 chr3 218009858 218009982 -9514596 + L3b LINE CR1 1111 1234 -349 22 0 0 0 chr3 218010362 218010384 -9514194 + AT_rich Low_complexity Low_complexity 1 22 0 2214 116 0 3 chr3 218010701 218011002 -9513576 - AluSx SINE Alu -12 300 1 437 319 63 11 chr3 218011306 218011497 -9513081 + MIR3 SINE MIR 5 205 -3 311 273 55 47 chr3 218011864 218011992 -9512586 - MIR3 SINE MIR -77 131 3 348 292 0 9 chr3 218012661 218012774 -9511804 + T-rich Low_complexity Low_complexity 4 115 0 435 38 0 0 chr3 218014294 218014347 -9510231 + (TAAAA)n Simple_repeat Simple_repeat 3 55 0 22 56 0 0 chr3 218014412 218014448 -9510130 + AT_rich Low_complexity Low_complexity 1 36 0 223 328 15 84 chr3 218014588 218014719 -9509859 + MIR SINE MIR 90 211 -51 1098 53 0 0 chr3 218015760 218016030 -9508548 - AluY SINE Alu 0 419 150 21 0 0 0 chr3 218016117 218016138 -9508440 + AT_rich Low_complexity Low_complexity 1 21 0 249 336 66 15 chr3 218017343 218017480 -9507098 - L2 LINE L2 -5 3308 3165 400 364 91 29 chr3 218017621 218018039 -9506539 - L2 LINE L2 -694 2620 2177 338 358 101 48 chr3 218018717 218019033 -9505545 - L2 LINE L2 -8 3264 2932 527 267 24 35 chr3 218020492 218020657 -9503921 - MIR SINE MIR -63 145 34 274 161 11 126 chr3 218020671 218020758 -9503820 + MER20 DNA MER1_type 1 77 -142 509 242 0 16 chr3 218021154 218021278 -9503300 + MER20 DNA MER1_type 98 219 0 237 244 51 26 chr3 218021684 218021762 -9502816 - MER94 DNA DNA -45 89 10 21 71 0 0 chr3 218021879 218021921 -9502657 + AT_rich Low_complexity Low_complexity 1 42 0 321 336 8 34 chr3 218021944 218022063 -9502515 + MIR SINE MIR 19 134 -74 1203 302 107 40 chr3 218022268 218023228 -9501350 + L2 LINE L2 2273 3307 -6 180 0 0 0 chr3 218024148 218024168 -9500410 + (T)n Simple_repeat Simple_repeat 1 20 0 315 332 82 14 chr3 218024168 218024376 -9500202 + L2 LINE L2 2131 2352 -962 574 305 46 71 chr3 218025806 218026200 -9498378 + L3 LINE CR1 1128 1511 -66 354 279 0 54 chr3 218026332 218026443 -9498135 + MIR SINE MIR 87 191 -71 332 340 77 13 chr3 218026822 218026978 -9497600 - L3 LINE CR1 -36 1541 1376 198 374 19 65 chr3 218027228 218027383 -9497195 - MIR3 SINE MIR -41 167 20 813 367 66 45 chr3 218028580 218029218 -9495360 - L3 LINE CR1 -7 1570 920 204 400 6 39 chr3 218029257 218029437 -9495141 - L3 LINE CR1 -1186 391 218 654 265 6 0 chr3 218029492 218029654 -9494924 + ERVL LTR ERVL 1552 1714 -4050 380 323 106 12 chr3 218029950 218030272 -9494306 - ERVL LTR ERVL -4524 1240 889 3460 251 48 60 chr3 218030272 218031200 -9493378 + ERVL LTR ERVL 2442 3355 -2409 1929 149 0 0 chr3 218031200 218031476 -9493102 + AluSx SINE Alu 37 312 0 3460 251 48 60 chr3 218031476 218031730 -9492848 + ERVL LTR ERVL 3355 3610 -2154 3252 86 2 9 chr3 218031746 218032198 -9492380 - L1PA8A LINE L1 0 6131 5683 1903 116 34 0 chr3 218032810 218033123 -9491455 - AluSx SINE Alu 0 328 7 518 284 6 24 chr3 218033532 218033738 -9490840 - MIR SINE MIR 0 262 61 183 261 294 11 chr3 218033911 218034003 -9490575 + L2 LINE L2 3137 3254 -18 300 330 38 14 chr3 218034593 218034805 -9489773 - L2 LINE L2 -936 2378 2162 374 269 103 37 chr3 218035113 218035355 -9489223 - HAL1 LINE L1 0 2507 2250 338 203 54 108 chr3 218035572 218035638 -9488940 + LTR45B LTR ERV1 350 418 -71 2034 138 0 0 chr3 218035638 218035928 -9488650 + AluSg SINE Alu 1 290 -20 338 203 54 108 chr3 218035928 218036009 -9488569 + LTR45B LTR ERV1 418 489 0 241 253 91 71 chr3 218036891 218036990 -9487588 - MIR SINE MIR -6 256 156 225 0 0 0 chr3 218037496 218037521 -9487057 + (TG)n Simple_repeat Simple_repeat 2 26 0 1672 164 4 11 chr3 218037582 218037857 -9486721 - AluJo SINE Alu -39 273 1 1015 206 69 42 chr3 218037887 218038338 -9486240 - MER69 DNA AcHobo -54 2472 2010 * 1437 264 52 34 chr3 218038336 218038835 -9485743 - MER69 DNA AcHobo -658 568 61 5605 129 19 40 chr3 218038867 218039928 -9484650 - L1MA5A LINE L1 -3 6294 5257 339 263 44 18 chr3 218040043 218040157 -9484421 + MIR3 SINE MIR 46 162 -46 318 305 126 40 chr3 218042443 218042617 -9481961 + MIR SINE MIR 44 232 -30 504 225 18 0 chr3 218042752 218042863 -9481715 + MER81 DNA DNA 2 114 0 821 260 16 16 chr3 218042868 218043060 -9481518 + MIR SINE MIR 14 205 -57 350 234 214 14 chr3 218043378 218043523 -9481055 + MIR3 SINE MIR 4 177 -31 231 254 246 16 chr3 218044137 218044263 -9480315 + MIR3 SINE MIR 2 156 -52 228 311 136 0 chr3 218044715 218044818 -9479760 + MIR3 SINE MIR 85 201 -7 484 278 102 28 chr3 218046482 218046698 -9477880 + MIR SINE MIR 31 262 0 285 336 66 83 chr3 218046798 218047352 -9477226 + L2 LINE L2 2708 3272 0 271 0 25 25 chr3 218047410 218047450 -9477128 + (TTTTG)n Simple_repeat Simple_repeat 2 41 0 29 0 0 0 chr3 218047932 218047961 -9476617 + AT_rich Low_complexity Low_complexity 1 29 0 358 299 102 0 chr3 218048348 218048485 -9476093 + MIR3 SINE MIR 2 152 -56 1125 212 71 11 chr3 218048512 218048795 -9475783 - MER58B DNA MER1_type -15 326 27 22 70 0 0 chr3 218049653 218049696 -9474882 + AT_rich Low_complexity Low_complexity 1 43 0 213 284 102 0 chr3 218049913 218050001 -9474577 + MIR SINE MIR 166 262 0 1929 281 79 46 chr3 218050451 218051427 -9473151 - L2 LINE L2 -5 3308 2303 207 235 87 70 chr3 218051938 218052053 -9472525 + L3 LINE CR1 1019 1135 -442 553 320 88 13 chr3 218052133 218052361 -9472217 + L3 LINE CR1 1261 1505 -72 2592 52 0 3 chr3 218053319 218053627 -9470951 - AluY SINE Alu -4 307 1 276 322 87 9 chr3 218053627 218053742 -9470836 - L2 LINE L2 -12 3301 3178 1180 224 60 25 chr3 218054320 218054686 -9469892 - L1ME2 LINE L1 -65 6099 5721 246 246 56 92 chr3 218054757 218054848 -9469730 + L1ME LINE L1 5522 5608 -513 2484 66 0 3 chr3 218054848 218055151 -9469427 - AluSc SINE Alu -7 302 1 246 246 56 92 chr3 218055151 218055201 -9469377 + L1ME LINE L1 5608 5658 -463 203 178 0 22 chr3 218056003 218056048 -9468530 + (TTCA)n Simple_repeat Simple_repeat 2 45 0 740 290 78 22 chr3 218056158 218056389 -9468189 - MIR SINE MIR -3 259 16 222 422 37 0 chr3 218056518 218056679 -9467899 + L2 LINE L2 2887 3053 -219 1640 159 59 0 chr3 218057190 218057460 -9467118 - AluJo SINE Alu -18 294 9 277 218 73 0 chr3 218059059 218059114 -9465464 - MIR SINE MIR -57 151 93 486 0 0 0 chr3 218059293 218059347 -9465231 + (TA)n Simple_repeat Simple_repeat 2 55 0 1821 152 0 7 chr3 218060473 218060750 -9463828 + AluJb SINE Alu 24 298 -14 278 299 21 49 chr3 218061397 218061541 -9463037 + MIR SINE MIR 56 195 -67 399 317 78 49 chr3 218061610 218061853 -9462725 + MIR SINE MIR 3 252 -10 269 326 56 49 chr3 218062173 218062317 -9462261 + MIR3 SINE MIR 16 160 -48 271 279 132 22 chr3 218062901 218063037 -9461541 - MIR3 SINE MIR -31 177 27 811 217 11 60 chr3 218063520 218063569 -9461009 - MER5A DNA MER1_type -14 175 125 2214 113 0 3 chr3 218063569 218063880 -9460698 + AluSq SINE Alu 1 310 -3 811 217 11 60 chr3 218063880 218064014 -9460564 - MER5A DNA MER1_type -64 125 1 380 336 27 9 chr3 218064770 218064880 -9459698 + MIR3 SINE MIR 3 114 -94 202 228 105 97 chr3 218065887 218066001 -9458577 - MIR SINE MIR -85 177 63 476 145 0 0 chr3 218066033 218066102 -9458476 + Tigger2 DNA MER2_type 1 69 -2649 * 1453 128 161 77 chr3 218066086 218066439 -9458139 + Tigger2 DNA MER2_type 2267 2649 -69 1434 223 74 72 chr3 218066440 218066887 -9457691 + MLT2B1 LTR ERVL 31 481 -39 207 69 0 0 chr3 218066887 218066916 -9457662 + (CA)n Simple_repeat Simple_repeat 2 30 0 1434 223 74 72 chr3 218066916 218066957 -9457621 + MLT2B1 LTR ERVL 481 520 0 194 273 0 0 chr3 218067249 218067293 -9457285 - MIR3 SINE MIR -32 176 133 2688 35 0 0 chr3 218067427 218067737 -9456841 - AluY SINE Alu -1 310 1 230 354 0 0 chr3 218067968 218068050 -9456528 + MIR SINE MIR 67 148 -60 362 336 113 9 chr3 218069548 218069777 -9454801 - MIR SINE MIR -2 260 8 546 276 71 108 chr3 218069984 218070418 -9454160 + MLT1J2 LTR MaLR 6 423 -27 986 194 50 92 chr3 218070517 218071038 -9453540 + L1MC5 LINE L1 7426 7924 -37 331 310 35 18 chr3 218071831 218071944 -9452634 + MIR SINE MIR 33 147 -61 288 356 14 77 chr3 218072597 218072805 -9451773 - L2 LINE L2 -216 3056 2862 704 314 15 0 chr3 218073651 218073855 -9450723 + MIR SINE MIR 13 219 -43 1985 130 7 3 chr3 218073867 218074332 -9450246 + AluSx SINE Alu 11 476 0 1406 33 6 6 chr3 218074152 218074403 -9450175 + (GAAA)n Simple_repeat Simple_repeat 1 251 0 226 332 106 85 chr3 218074505 218074836 -9449742 + L2 LINE L2 2845 3182 -90 309 297 146 50 chr3 218075611 218076076 -9448502 + L1ME LINE L1 2401 2910 -3236 34 65 0 0 chr3 218076272 218076334 -9448244 + AT_rich Low_complexity Low_complexity 1 62 0 287 267 183 21 chr3 218076653 218076844 -9447734 + L1ME LINE L1 5523 5744 -426 1136 245 68 83 chr3 218077116 218077214 -9447364 + HAL1b LINE L1 353 451 -897 2420 156 44 0 chr3 218077214 218077624 -9446954 + MSTA LTR MaLR 1 428 0 1136 245 68 83 chr3 218077624 218078141 -9446437 + HAL1b LINE L1 451 959 -389 2468 164 61 0 chr3 218078143 218078605 -9445973 - L1MC1 LINE L1 -8 6605 6116 2945 153 36 14 chr3 218078605 218079110 -9445468 - MER34 LTR ERV1 0 542 27 8155 224 64 38 chr3 218079115 218080828 -9443750 - L1MC1 LINE L1 -488 6125 4458 1988 158 0 22 chr3 218080828 218081139 -9443439 + AluSx SINE Alu 1 304 -8 8155 224 64 38 chr3 218081139 218081905 -9442673 - L1MC1 LINE L1 -2155 4458 3713 2146 76 0 14 chr3 218081905 218082181 -9442397 - AluY SINE Alu -39 272 1 8155 224 64 38 chr3 218082181 218083752 -9440826 - L1MC1 LINE L1 -2900 3713 2184 2520 110 30 3 chr3 218083752 218084117 -9440461 + THE1C LTR MaLR 1 375 0 8155 224 64 38 chr3 218084117 218084291 -9440287 - L1MC1 LINE L1 -4429 2184 2016 2392 64 0 13 chr3 218084291 218084616 -9439962 - AluY SINE Alu 0 311 1 8155 224 64 38 chr3 218084616 218085423 -9439155 - L1MC1 LINE L1 -4597 2016 978 4280 132 39 21 chr3 218085426 218086125 -9438453 - MER50 LTR ERV1 -23 711 1 4276 190 25 72 chr3 218086125 218087132 -9437446 - L1MC1 LINE L1 -5447 979 21 241 244 55 31 chr3 218087141 218087268 -9437310 + HAL1b LINE L1 952 1081 -267 2088 105 6 32 chr3 218087470 218087783 -9436795 - AluSq SINE Alu -8 305 1 24 67 0 0 chr3 218087884 218087929 -9436649 + AT_rich Low_complexity Low_complexity 1 45 0 1517 185 6 78 chr3 218088250 218088585 -9435993 - AluJb SINE Alu -1 311 1 1718 35 0 0 chr3 218088628 218088831 -9435747 - L1PA5 LINE L1 -13 6141 5939 454 296 83 89 chr3 218088836 218089364 -9435214 - HAL1 LINE L1 -1165 1342 818 209 246 0 18 chr3 218090020 218090077 -9434501 + (TA)n Simple_repeat Simple_repeat 1 56 0 1618 127 0 27 chr3 218090083 218090343 -9434235 - AluSx SINE Alu -7 305 53 376 257 20 144 chr3 218090812 218090913 -9433665 - MIR3 SINE MIR 0 208 143 1457 185 7 52 chr3 218090913 218091221 -9433357 + AluJo SINE Alu 1 294 -18 376 257 20 144 chr3 218091221 218091321 -9433257 - MIR3 SINE MIR -65 143 32 186 358 165 0 chr3 218091350 218091459 -9433119 - L2 LINE L2 -17 3255 3129 21 0 0 0 chr3 218091843 218091864 -9432714 + AT_rich Low_complexity Low_complexity 1 21 0 573 317 70 29 chr3 218091864 218092754 -9431824 + L1ME3A LINE L1 4999 5923 -247 23 78 0 0 chr3 218092923 218092974 -9431604 + AT_rich Low_complexity Low_complexity 1 51 0 34 55 0 0 chr3 218093035 218093090 -9431488 + AT_rich Low_complexity Low_complexity 1 55 0 530 188 51 74 chr3 218093230 218093406 -9431172 + L1MC5 LINE L1 7723 7894 -67 22 103 0 0 chr3 218093833 218093911 -9430667 + AT_rich Low_complexity Low_complexity 1 78 0 21 0 0 0 chr3 218094786 218094807 -9429771 + AT_rich Low_complexity Low_complexity 1 21 0 752 56 0 19 chr3 218094903 218095010 -9429568 + (TTCC)n Simple_repeat Simple_repeat 4 108 0 421 163 10 10 chr3 218095014 218095112 -9429466 + CT-rich Low_complexity Low_complexity 3 100 0 795 43 29 36 chr3 218095112 218095251 -9429327 + (TTTC)n Simple_repeat Simple_repeat 3 140 0 580 311 39 72 chr3 218095329 218096159 -9428419 - HAL1 LINE L1 -714 1793 992 4118 176 98 10 chr3 218097090 218097966 -9426612 - L1MA7 LINE L1 -2 6289 5337 1351 181 19 0 chr3 218097972 218098231 -9426347 - L1MA7 LINE L1 -1036 5110 4847 934 211 53 20 chr3 218098543 218098789 -9425789 + L1MD3 LINE L1 7733 7986 -9 315 0 0 0 chr3 218098794 218098829 -9425749 + (CA)n Simple_repeat Simple_repeat 2 36 0 187 340 0 0 chr3 218099149 218099202 -9425376 - L2 LINE L2 -1 3271 3219 210 219 0 0 chr3 218100079 218100120 -9424458 - L2 LINE L2 -6 3307 3267 2249 92 0 0 chr3 218100269 218100552 -9424026 + AluSg SINE Alu 1 283 -27 186 43 0 0 chr3 218100777 218100800 -9423778 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 446 277 176 33 chr3 218101193 218101586 -9422992 - L1ME3A LINE L1 -219 5951 5503 2177 121 0 0 chr3 218102052 218102342 -9422236 + AluSg SINE Alu 1 290 -20 223 233 62 41 chr3 218102787 218102901 -9421677 - MIR SINE MIR -28 234 119 23 33 0 0 chr3 218103588 218103618 -9420960 + AT_rich Low_complexity Low_complexity 1 30 0 192 219 0 0 chr3 218103687 218103728 -9420850 - MIR SINE MIR -108 154 114 293 304 50 50 chr3 218103806 218103967 -9420611 - MIR3 SINE MIR -35 173 13 188 271 62 0 chr3 218104399 218104447 -9420131 + MIR SINE MIR 99 149 -113 727 308 94 0 chr3 218104599 218104833 -9419745 + MIR SINE MIR 2 257 -5 27 0 0 0 chr3 218104830 218104857 -9419721 + AT_rich Low_complexity Low_complexity 1 27 0 * 7015 48 20 11 chr3 218105139 218105422 -9419156 - L1P3 LINE L1 -390 5764 5485 2317 100 0 6 chr3 218105422 218105733 -9418845 - AluSg SINE Alu -1 309 1 7015 48 20 11 chr3 218105733 218106742 -9417836 - L1P3 LINE L1 -669 5485 4455 6518 40 1 0 chr3 218106741 218107532 -9417046 + L1P3 LINE L1 3651 4442 -1704 * 31 68 0 0 chr3 218107718 218107777 -9416801 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr3 218108139 218108160 -9416418 + AT_rich Low_complexity Low_complexity 1 21 0 444 261 22 22 chr3 218108692 218108826 -9415752 + MER5A DNA MER1_type 5 138 -51 200 283 0 0 chr3 218108958 218109004 -9415574 + MER5A DNA MER1_type 143 188 -1 408 256 120 8 chr3 218109670 218109787 -9414791 + MER5B DNA MER1_type 1 130 -48 3764 221 3 22 chr3 218109811 218110277 -9414301 - L1P LINE L1 -1935 4211 3738 354 45 0 0 chr3 218110277 218110321 -9414257 + (TTTTC)n Simple_repeat Simple_repeat 2 45 0 1887 122 0 51 chr3 218110323 218110618 -9413960 - AluSx SINE Alu -32 280 1 3764 221 3 22 chr3 218110618 218111014 -9413564 - L1P LINE L1 -2409 3737 3362 2767 203 3 15 chr3 218111006 218111618 -9412960 + L1 LINE L1 4228 4832 -1314 * 5266 149 13 1 chr3 218111630 218112801 -9411777 + L1PA16 LINE L1 4975 6157 -9 216 224 0 20 chr3 218112819 218112868 -9411710 - MER5B DNA MER1_type -129 49 2 237 314 116 0 chr3 218112908 218112994 -9411584 - MIR SINE MIR -114 148 53 248 0 0 30 chr3 218113630 218113663 -9410915 + (TG)n Simple_repeat Simple_repeat 2 33 0 4056 315 17 19 chr3 218114272 218115910 -9408668 + L1PBa LINE L1 3 1637 -5226 2119 210 23 18 chr3 218115878 218122015 -9402563 + L1PB3 LINE L1 1 6204 -7 * 23 0 0 0 chr3 218122015 218122038 -9402540 + AT_rich Low_complexity Low_complexity 1 23 0 2183 119 0 16 chr3 218122935 218123247 -9401331 - AluSx SINE Alu -1 311 5 332 355 101 18 chr3 218123568 218123796 -9400782 - ERVL LTR ERVL -2167 3597 3351 21 0 0 0 chr3 218123836 218123857 -9400721 + AT_rich Low_complexity Low_complexity 1 21 0 320 262 102 12 chr3 218124034 218124246 -9400332 + L1ME3A LINE L1 2397 2633 -3907 305 256 6 38 chr3 218124246 218124406 -9400172 + (TA)n Simple_repeat Simple_repeat 1 155 0 549 40 6 96 chr3 218124427 218124604 -9399974 + (TA)n Simple_repeat Simple_repeat 1 161 0 895 249 79 59 chr3 218124612 218125412 -9399166 + L1ME3A LINE L1 2614 3429 -3111 485 263 8 23 chr3 218125678 218125811 -9398767 - MLT1J2 LTR MaLR -275 175 45 616 292 87 15 chr3 218125880 218126342 -9398236 + L1ME3A LINE L1 4708 5202 -1338 371 78 61 2 chr3 218126363 218126599 -9397979 + AluSp SINE Alu 1 295 -8 246 128 0 0 chr3 218126712 218126751 -9397827 + (T)n Simple_repeat Simple_repeat 1 39 0 417 70 0 0 chr3 218126815 218126872 -9397706 + (TTCC)n Simple_repeat Simple_repeat 3 59 0 1139 112 6 28 chr3 218126874 218127052 -9397526 - L1PA8A LINE L1 -8 6123 5950 759 140 53 47 chr3 218127443 218127593 -9396985 + FAM SINE Alu 1 43 -6 337 262 86 68 chr3 218127667 218127991 -9396587 + L1ME3A LINE L1 5351 5680 -860 4489 48 0 0 chr3 218127998 218128565 -9396013 - L1P LINE L1 -3597 2549 1983 7577 23 3 2 chr3 218128565 218130069 -9394509 + L1PA4 LINE L1 4648 6152 -3 1575 260 28 36 chr3 218130100 218130746 -9393832 + L1ME3A LINE L1 5714 6354 -210 225 322 0 0 chr3 218131030 218131117 -9393461 - L2 LINE L2 -1441 1873 1787 225 266 32 75 chr3 218131402 218131496 -9393082 - MLT1L LTR MaLR -361 254 165 1263 254 51 25 chr3 218131549 218131997 -9392581 - LTR40b LTR ERVL -2 460 1 280 291 47 0 chr3 218132456 218132542 -9392036 + MIR3 SINE MIR 115 204 -4 2103 85 0 85 chr3 218132633 218132951 -9391627 - AluSg1 SINE Alu -16 293 3 225 0 0 0 chr3 218133557 218133582 -9390996 + (TG)n Simple_repeat Simple_repeat 1 25 0 239 404 60 0 chr3 218133653 218133804 -9390774 + L2 LINE L2 3107 3266 -6 480 277 73 15 chr3 218133816 218133953 -9390625 - MIR3 SINE MIR -45 163 19 312 27 0 0 chr3 218134241 218134278 -9390300 + (TAAAA)n Simple_repeat Simple_repeat 2 38 0 39 38 0 0 chr3 218134362 218134415 -9390163 + AT_rich Low_complexity Low_complexity 1 53 0 1407 187 60 4 chr3 218134416 218134571 -9390007 - AluJo SINE Alu -25 287 109 281 64 43 0 chr3 218134571 218134618 -9389960 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 1407 187 60 4 chr3 218134618 218134730 -9389848 - AluJo SINE Alu -203 109 5 240 295 64 20 chr3 218134917 218135042 -9389536 + MIR SINE MIR 25 131 -77 395 286 69 42 chr3 218135620 218135809 -9388769 + MIR SINE MIR 59 252 -10 27 87 0 0 chr3 218136010 218136079 -9388499 + AT_rich Low_complexity Low_complexity 1 69 0 468 51 0 0 chr3 218136682 218136741 -9387837 + (TCTA)n Simple_repeat Simple_repeat 4 62 0 2112 102 0 34 chr3 218136741 218137035 -9387543 - AluSg SINE Alu -26 284 1 270 127 42 0 chr3 218138539 218138610 -9385968 + (TA)n Simple_repeat Simple_repeat 2 75 0 193 346 126 16 chr3 218141706 218141833 -9382745 - MIR3 SINE MIR -48 160 20 236 347 132 25 chr3 218142642 218142763 -9381815 + L2 LINE L2 3122 3255 -17 257 326 47 0 chr3 218143315 218143401 -9381177 - MIR SINE MIR -127 135 46 257 286 152 0 chr3 218143436 218143541 -9381037 + MIR SINE MIR 88 208 -54 2157 233 73 48 chr3 218145156 218145865 -9378713 + L1MA8 LINE L1 466 1192 -6297 3307 250 35 34 chr3 218145880 218147114 -9377464 + L1MA8 LINE L1 2011 3245 -4320 4341 185 62 6 chr3 218147115 218148142 -9376436 + L1MA8 LINE L1 5785 6861 -743 1297 173 135 3 chr3 218148152 218148441 -9376137 + L1MA8 LINE L1 7373 7699 -11 1218 251 99 0 chr3 218148479 218148953 -9375625 - MER114 LTR ERV -75 573 53 21 0 0 0 chr3 218149234 218149255 -9375323 + AT_rich Low_complexity Low_complexity 1 21 0 749 100 107 0 chr3 218149300 218149440 -9375138 + L1M LINE L1 5257 5411 -901 251 376 46 0 chr3 218150668 218150777 -9373801 - L2 LINE L2 -22 3291 3178 2402 73 7 0 chr3 218150809 218151109 -9373469 - AluSg SINE Alu -8 302 1 369 0 0 0 chr3 218151155 218151196 -9373382 + (TG)n Simple_repeat Simple_repeat 2 42 0 258 286 36 57 chr3 218151771 218151911 -9372667 + MIR SINE MIR 76 212 -50 29 70 0 0 chr3 218151946 218152003 -9372575 + AT_rich Low_complexity Low_complexity 1 57 0 1310 238 25 20 chr3 218152454 218152807 -9371771 - MLT1A1 LTR MaLR 0 365 11 318 212 12 47 chr3 218152944 218153029 -9371549 - MLT1J LTR MaLR -43 468 387 1051 184 130 6 chr3 218153121 218153452 -9371126 + Charlie1 DNA MER1_type 2339 2710 -51 257 228 141 0 chr3 218153461 218153553 -9371025 - MLT1J LTR MaLR -396 115 11 507 345 51 15 chr3 218153590 218154001 -9370577 - L1ME3A LINE L1 -224 5946 5521 458 251 80 51 chr3 218154168 218154343 -9370235 - MLT1L LTR MaLR -70 545 366 409 263 32 21 chr3 218154727 218154917 -9369661 - L1MEc LINE L1 -4051 2345 2154 1013 197 6 0 chr3 218154942 218155120 -9369458 - AluJb SINE Alu 0 312 134 1041 187 29 37 chr3 218155134 218155380 -9369198 - L1MB8 LINE L1 -25 6153 5910 619 116 0 0 chr3 218155382 218155468 -9369110 + AluS SINE Alu 9 94 -219 397 315 33 25 chr3 218355495 218355771 -9168807 + L1MC4a LINE L1 5659 5936 -1872 747 196 12 6 chr3 218356948 218357111 -9167467 - L1MD2 LINE L1 -7 6352 6189 308 123 108 0 chr3 218357140 218357205 -9167373 - L1MA4A LINE L1 -16 6287 6216 979 275 144 14 chr3 218358211 218358571 -9166007 + L2 LINE L2 1912 2318 -996 694 305 4 13 chr3 218358569 218358808 -9165770 - L2 LINE L2 -225 3088 2852 * 1559 314 37 37 chr3 218358875 218359286 -9165292 + L2 LINE L2 2299 2709 -604 1988 112 3 17 chr3 218359286 218359573 -9165005 - AluSx SINE Alu -17 295 13 1559 314 37 37 chr3 218359573 218360189 -9164389 + L2 LINE L2 2709 3312 -1 21 0 0 0 chr3 218361062 218361083 -9163495 + AT_rich Low_complexity Low_complexity 1 21 0 366 335 57 11 chr3 218361354 218361530 -9163048 - MIR SINE MIR -26 236 53 218 369 62 28 chr3 218362186 218362362 -9162216 - L2 LINE L2 -219 3053 2872 282 173 53 13 chr3 218363576 218363651 -9160927 - MER116 DNA Mariner 0 80 3 607 240 94 16 chr3 218363903 218364095 -9160483 + L1MA7 LINE L1 5984 6190 -101 248 290 7 97 chr3 218364097 218364242 -9160336 - L3 LINE CR1 -257 1320 1189 401 373 62 21 chr3 218364268 218364654 -9159924 + L2 LINE L2 1966 2367 -947 1076 199 35 42 chr3 218364793 218365079 -9159499 - L1MB8 LINE L1 0 6178 5895 252 211 0 0 chr3 218365081 218365133 -9159445 + L1MB5 LINE L1 5898 5949 -225 1241 210 16 89 chr3 218365182 218365797 -9158781 - L1MB8 LINE L1 -293 5885 5350 361 247 81 71 chr3 218365803 218366086 -9158492 - L1MB8 LINE L1 -2536 3610 3325 1544 206 13 75 chr3 218366103 218366148 -9158430 - MLT2B3 LTR ERVL 0 554 508 1869 179 0 49 chr3 218366148 218366533 -9158045 - MER47A DNA MER2_type 0 366 1 1544 206 13 75 chr3 218366533 218366876 -9157702 - MLT2B3 LTR ERVL -46 508 190 338 259 54 36 chr3 218367158 218367312 -9157266 - L1ME LINE L1 -5905 165 6 240 333 89 52 chr3 218369316 218369685 -9154893 + L1MDa LINE L1 291 673 -5446 402 310 49 22 chr3 218369723 218369949 -9154629 + L1MDa LINE L1 974 1205 -4914 271 292 95 10 chr3 218370031 218370311 -9154267 + L1MDa LINE L1 1358 1629 -861 3720 194 16 0 chr3 218370791 218371419 -9153159 + L1PA13 LINE L1 1 638 -6149 585 304 97 5 chr3 218371425 218371642 -9152936 - MIR SINE MIR -15 247 11 363 290 109 44 chr3 218371728 218371997 -9152581 + L1MDa LINE L1 2168 2413 -3716 1020 187 76 0 chr3 218372399 218372597 -9151981 + MER20 DNA MER1_type 1 213 -6 191 320 92 46 chr3 218372767 218372920 -9151658 - L2 LINE L2 -5 3308 3149 450 276 43 12 chr3 218373063 218373226 -9151352 - MIR3 SINE MIR -3 205 38 1088 281 49 48 chr3 218373312 218373340 -9151238 - MLT2B1 LTR ERVL -13 541 515 366 61 0 0 chr3 218373340 218373389 -9151189 + (TG)n Simple_repeat Simple_repeat 2 50 0 1088 281 49 48 chr3 218373389 218373819 -9150759 - MLT2B1 LTR ERVL -39 515 3 428 250 36 26 chr3 218374017 218374209 -9150369 - HAL1 LINE L1 -1367 1140 947 2219 138 11 13 chr3 218374302 218374678 -9149900 + THE1C LTR MaLR 1 375 0 27 49 0 0 chr3 218374865 218374906 -9149672 + AT_rich Low_complexity Low_complexity 1 41 0 6201 217 35 23 chr3 218375098 218377276 -9147302 + L1MA4 LINE L1 4 2191 -4067 10501 36 3 107 chr3 218377282 218378828 -9145750 + SVA Other Other 1 1384 -2 548 147 52 81 chr3 218378865 218378923 -9145655 + LTR49-int LTR ERV1 3141 3199 -3132 2137 134 3 6 chr3 218378923 218379237 -9145341 - AluSq SINE Alu 0 313 1 548 147 52 81 chr3 218379237 218379314 -9145264 + LTR49-int LTR ERV1 3199 3272 -3059 323 234 0 0 chr3 218379374 218379438 -9145140 + LTR49-int LTR ERV1 3275 3338 -2993 496 184 20 0 chr3 218379497 218379595 -9144983 + LTR49-int LTR ERV1 3348 3447 -2884 14211 196 22 13 chr3 218379781 218381376 -9143202 + L1MA4 LINE L1 2169 3748 -2734 2073 191 59 5 chr3 218381376 218381780 -9142798 + MSTB LTR MaLR 1 426 0 14211 196 22 13 chr3 218381780 218382283 -9142295 + L1MA4 LINE L1 3748 4245 -2237 439 130 39 0 chr3 218382283 218382360 -9142218 - MADE1 DNA Mariner 0 80 1 14211 196 22 13 chr3 218382360 218384528 -9140050 + L1MA4 LINE L1 4245 6478 -4 244 220 110 51 chr3 218384727 218384845 -9139733 + L1MC/D LINE L1 5342 5466 -2342 716 297 66 9 chr3 218384882 218385094 -9139484 + MIR SINE MIR 18 241 -21 368 319 38 30 chr3 218385156 218385391 -9139187 + L1MC/D LINE L1 5584 5820 -1988 1321 245 136 7 chr3 218385416 218385878 -9138700 - Charlie1b DNA MER1_type -1 522 1 926 236 24 10 chr3 218385878 218386086 -9138492 - MER97a DNA MER1_type? -683 211 1 273 257 20 89 chr3 218387014 218387115 -9137463 - MIR3 SINE MIR -6 202 109 2055 127 52 19 chr3 218387229 218387592 -9136986 + THE1C LTR MaLR 1 375 0 21 0 0 0 chr3 218387711 218387732 -9136846 + AT_rich Low_complexity Low_complexity 1 21 0 212 189 0 0 chr3 218389863 218389900 -9134678 + A-rich Low_complexity Low_complexity 1 37 0 234 248 18 110 chr3 218393360 218393469 -9131109 - Charlie8 DNA MER1_type -2318 99 1 731 133 8 0 chr3 218393739 218393867 -9130711 + (TTCC)n Simple_repeat Simple_repeat 1 129 0 379 301 65 59 chr3 218393874 218394060 -9130518 - MIR SINE MIR -70 192 6 256 417 25 0 chr3 218394180 218394300 -9130278 + L2 LINE L2 3141 3263 -9 259 289 27 45 chr3 218394599 218394702 -9129876 + MIR SINE MIR 10 113 -95 22 0 0 0 chr3 218394830 218394852 -9129726 + AT_rich Low_complexity Low_complexity 1 22 0 244 368 63 0 chr3 218395424 218395519 -9129059 - L3 LINE CR1 -905 672 572 251 256 13 13 chr3 218395946 218396024 -9128554 - LTR50 LTR ERVL -6 789 712 204 393 59 0 chr3 218396363 218396498 -9128080 - MIR3 SINE MIR -21 187 45 474 338 96 0 chr3 218397172 218397453 -9127125 - L2 LINE L2 -11 3302 2995 1227 302 40 7 chr3 218397529 218398167 -9126411 + L2 LINE L2 2513 3173 -140 4461 192 62 9 chr3 218398224 218399097 -9125481 - L1MC3 LINE L1 -8 7777 6845 231 36 0 0 chr3 218399097 218399125 -9125453 + (TTTTC)n Simple_repeat Simple_repeat 3 30 0 4461 192 62 9 chr3 218399125 218399227 -9125351 - L1MC3 LINE L1 -940 6845 6750 339 266 13 13 chr3 218399237 218399316 -9125262 + L2 LINE L2 3235 3313 0 208 364 101 23 chr3 218399630 218399759 -9124819 + L2 LINE L2 3116 3254 -18 296 310 80 18 chr3 218400050 218400163 -9124415 - MIR3 SINE MIR -51 157 72 186 231 62 31 chr3 218400579 218400644 -9123934 - MIR SINE MIR -108 100 34 236 325 53 44 chr3 218400810 218400924 -9123654 - L2 LINE L2 -5 3267 3153 22 0 0 0 chr3 218401973 218401995 -9122583 + AT_rich Low_complexity Low_complexity 1 22 0 197 321 48 36 chr3 218402228 218402312 -9122266 + L2 LINE L2 3170 3254 -18 430 339 33 16 chr3 218403706 218403889 -9120689 - MIR SINE MIR -31 231 46 222 37 0 0 chr3 218404002 218404029 -9120549 + (TC)n Simple_repeat Simple_repeat 1 27 0 31 26 0 0 chr3 218405001 218405039 -9119539 + AT_rich Low_complexity Low_complexity 1 38 0 236 265 29 0 chr3 218405047 218405115 -9119463 - L1ME LINE L1 -298 5823 5754 4025 172 30 84 chr3 218405137 218405854 -9118724 - L1MB2 LINE L1 -1 6170 5517 189 74 0 0 chr3 218405854 218405881 -9118697 + (TTTTA)n Simple_repeat Simple_repeat 2 28 0 4025 172 30 84 chr3 218405881 218406130 -9118448 - L1MB2 LINE L1 -654 5517 5256 366 366 72 38 chr3 218406152 218406543 -9118035 - L1ME LINE L1 -415 5706 5303 200 357 48 16 chr3 218407753 218407879 -9116699 + L2 LINE L2 2932 3061 -211 957 208 0 0 chr3 218408281 218408454 -9116124 - AluSg/x SINE Alu -10 302 130 2030 158 62 38 chr3 218408469 218408887 -9115691 - MSTA LTR MaLR 0 428 1 198 360 9 9 chr3 218409097 218409208 -9115370 - MIR SINE MIR -119 143 33 494 226 0 0 chr3 218409711 218409826 -9114752 + L1ME3A LINE L1 6051 6165 -5 27 0 0 0 chr3 218409827 218409854 -9114724 + AT_rich Low_complexity Low_complexity 1 27 0 261 298 33 77 chr3 218409958 218410139 -9114439 + MIR SINE MIR 53 225 -37 2068 104 14 0 chr3 218410680 218410969 -9113609 + AluSx SINE Alu 1 293 -19 481 285 110 31 chr3 218411023 218411251 -9113327 + MIR SINE MIR 3 248 -14 3075 174 58 30 chr3 218412212 218412244 -9112334 + MER67B LTR ERV1 1 31 -630 1870 19 0 0 chr3 218412244 218412453 -9112125 - AluY SINE Alu -17 294 86 3075 174 58 30 chr3 218412453 218413063 -9111515 + MER67B LTR ERV1 31 661 0 2310 109 0 0 chr3 218413222 218413534 -9111044 + AluSx SINE Alu 1 312 0 205 176 0 0 chr3 218413959 218413993 -9110585 + T-rich Low_complexity Low_complexity 2 35 0 336 143 0 0 chr3 218414075 218414131 -9110447 + (TA)n Simple_repeat Simple_repeat 2 57 0 307 190 0 0 chr3 218414132 218414190 -9110388 - L1MC4 LINE L1 -1337 6705 6648 437 274 171 47 chr3 218414327 218414789 -9109789 - L2 LINE L2 -8 3305 2719 554 283 104 21 chr3 218414800 218415040 -9109538 - MIR SINE MIR 0 262 3 1677 260 177 21 chr3 218415091 218415809 -9108769 - L2 LINE L2 -656 2658 1829 2162 144 28 34 chr3 218416117 218416554 -9108024 - L1MA3 LINE L1 0 6305 5872 465 318 104 9 chr3 218416949 218417169 -9107409 + MIR SINE MIR 12 252 -10 476 215 9 9 chr3 218417998 218418105 -9106473 - L2 LINE L2 -1 3312 3206 23 54 0 0 chr3 218418499 218418536 -9106042 + GC_rich Low_complexity Low_complexity 1 37 0 513 330 16 0 chr3 218418867 218419049 -9105529 - MIR3 SINE MIR -1 207 23 397 248 0 150 chr3 218419740 218419966 -9104612 + MIR SINE MIR 36 227 -35 365 315 105 50 chr3 218421221 218421440 -9103138 + MIR SINE MIR 20 250 -12 203 398 59 0 chr3 218421482 218421600 -9102978 - MIR3 SINE MIR -79 129 5 234 264 0 0 chr3 218423061 218423114 -9101464 - MIR SINE MIR -44 218 166 2282 117 19 32 chr3 218423162 218423531 -9101047 - THE1B LTR MaLR 0 364 1 230 259 222 30 chr3 218423675 218423810 -9100768 + MIR3 SINE MIR 48 208 0 230 233 0 0 chr3 218423797 218423840 -9100738 + L3 LINE CR1 1535 1577 0 395 260 61 0 chr3 218423974 218424110 -9100468 - MIR SINE MIR -58 204 59 21 0 0 0 chr3 218424366 218424387 -9100191 + AT_rich Low_complexity Low_complexity 1 21 0 332 258 31 10 chr3 218425596 218425693 -9098885 + MIR SINE MIR 83 181 -81 303 336 16 70 chr3 218425977 218426105 -9098473 - MIR3 SINE MIR -85 123 3 290 295 74 27 chr3 218426840 218426893 -9097685 + MIR SINE MIR 101 150 -112 664 59 20 10 chr3 218426893 218426995 -9097583 + (TTCC)n Simple_repeat Simple_repeat 4 106 0 600 59 0 0 chr3 218426997 218427082 -9097496 + (TCTA)n Simple_repeat Simple_repeat 2 86 0 290 295 74 27 chr3 218427082 218427174 -9097404 + MIR SINE MIR 150 256 -6 197 302 0 0 chr3 218427332 218427385 -9097193 + L3 LINE CR1 1240 1292 -285 247 308 38 19 chr3 218427530 218427656 -9096922 + MIR SINE MIR 46 218 -44 237 323 121 0 chr3 218427713 218427812 -9096766 + L2 LINE L2 2937 3047 -266 5793 116 39 5 chr3 218427988 218429228 -9095350 - L1PA13 LINE L1 -8 6155 4873 482 268 36 0 chr3 218429228 218429340 -9095238 + L2 LINE L2 3177 3292 -21 254 203 0 29 chr3 218429465 218429534 -9095044 + (CATATA)n Simple_repeat Simple_repeat 6 72 0 197 160 0 40 chr3 218429594 218429644 -9094934 + (TATATG)n Simple_repeat Simple_repeat 5 52 0 219 293 104 37 chr3 218429776 218429940 -9094638 - L2 LINE L2 -126 3187 3013 257 284 75 30 chr3 218429985 218430119 -9094459 - L2 LINE L2 -432 2882 2743 328 367 130 0 chr3 218430781 218430950 -9093628 - MIR SINE MIR -31 231 41 494 268 143 19 chr3 218431119 218431328 -9093250 + MIR SINE MIR 7 241 -21 396 0 0 0 chr3 218432444 218432488 -9092090 + (CA)n Simple_repeat Simple_repeat 2 45 0 268 250 0 0 chr3 218432489 218432545 -9092033 + L2 LINE L2 3258 3313 0 623 234 166 24 chr3 218433634 218433874 -9090704 - MLT2F LTR ERVL -93 570 365 2147 66 3 75 chr3 218433874 218434023 -9090555 + AluSg SINE Alu 1 114 -196 2499 50 10 0 chr3 218434023 218434321 -9090257 + AluSc SINE Alu 1 301 -8 2147 66 3 75 chr3 218434321 218434503 -9090075 + AluSg SINE Alu 114 308 -2 623 234 166 24 chr3 218434503 218434689 -9089889 - MLT2F LTR ERVL -298 365 27 191 371 194 6 chr3 218434859 218435034 -9089544 - L2 LINE L2 -509 2805 2598 278 231 77 33 chr3 218435452 218435543 -9089035 - MIR SINE MIR -57 205 111 502 276 76 0 chr3 218435722 218435867 -9088711 + FAM SINE Alu 1 156 -19 25 0 0 0 chr3 218435872 218435897 -9088681 + AT_rich Low_complexity Low_complexity 1 25 0 389 238 181 52 chr3 218436806 218436875 -9087703 - MIR SINE MIR -1 261 202 2375 43 0 0 chr3 218436875 218437152 -9087426 - AluY SINE Alu -7 304 28 389 238 181 52 chr3 218437152 218437292 -9087286 - MIR SINE MIR -60 202 25 671 322 70 21 chr3 218437740 218438026 -9086552 + L3 LINE CR1 1269 1568 -9 180 152 0 0 chr3 218438570 218438603 -9085975 + T-rich Low_complexity Low_complexity 1 33 0 299 309 142 25 chr3 218439328 218439490 -9085088 + MIR3 SINE MIR 5 185 -23 213 39 0 0 chr3 218439531 218439557 -9085021 + (A)n Simple_repeat Simple_repeat 1 26 0 282 245 21 0 chr3 218441213 218441307 -9083271 + L1ME LINE L1 5730 5825 -296 21 0 0 0 chr3 218441834 218441855 -9082723 + AT_rich Low_complexity Low_complexity 1 21 0 189 107 0 0 chr3 218442605 218442633 -9081945 + (TTCTC)n Simple_repeat Simple_repeat 4 31 0 515 303 127 0 chr3 218442820 218442985 -9081593 + MER5A DNA MER1_type 4 189 0 223 231 28 161 chr3 218443009 218443152 -9081426 + L2 LINE L2 3144 3267 -5 2551 105 24 11 chr3 218443298 218443668 -9080910 + THE1C LTR MaLR 1 375 0 214 139 58 12 chr3 218444293 218444379 -9080199 + A-rich Low_complexity Low_complexity 1 90 0 26 0 0 0 chr3 218444552 218444578 -9080000 + AT_rich Low_complexity Low_complexity 1 26 0 216 360 10 0 chr3 218444846 218444946 -9079632 + CT-rich Low_complexity Low_complexity 2 102 0 2645 134 26 13 chr3 218445305 218445761 -9078817 - MER67C LTR ERV1 0 710 249 1242 191 22 47 chr3 218445748 218446068 -9078510 - MER67C LTR ERV1 -398 312 1 * 774 180 45 6 chr3 218446248 218446426 -9078152 - L1MB3 LINE L1 -30 6153 5969 373 340 27 16 chr3 218446913 218447101 -9077477 + MIR SINE MIR 34 223 -39 193 326 0 0 chr3 218447129 218447178 -9077400 + L2 LINE L2 3223 3271 -1 180 0 0 0 chr3 218447497 218447517 -9077061 + (T)n Simple_repeat Simple_repeat 1 20 0 319 325 80 83 chr3 218447959 218448298 -9076280 - L2 LINE L2 -2 3270 2933 291 241 30 45 chr3 218449338 218449471 -9075107 - MER103 DNA DNA -9 157 27 723 279 0 6 chr3 218451167 218451339 -9073239 - MIR SINE MIR -37 225 55 257 300 82 9 chr3 218452396 218452506 -9072072 - MIR SINE MIR -73 135 18 405 284 89 35 chr3 218452950 218453119 -9071459 - MIR SINE MIR -54 208 31 1526 182 44 3 chr3 218453635 218453931 -9070647 - MER61A LTR ERV1 -35 308 1 19245 90 13 8 chr3 218453931 218457106 -9067472 - MER61A-int LTR ERV1 -1 5216 1983 1100 109 27 8 chr3 218457105 218457314 -9067264 - MER61A-int LTR ERV1 -2659 4337 1434 * 1826 93 45 24 chr3 218457319 218457610 -9066968 - MER61A-int LTR ERV1 -3963 1254 958 3653 129 65 93 chr3 218457610 218458396 -9066182 - MER61A-int LTR ERV1 -4377 840 79 2796 7 0 3 chr3 218458396 218458706 -9065872 + AluYa5 SINE Alu 1 309 -2 3653 129 65 93 chr3 218458706 218458781 -9065797 - MER61A-int LTR ERV1 -5138 79 3 1444 202 88 6 chr3 218458783 218459100 -9065478 - MER61A LTR ERV1 0 343 1 354 218 61 48 chr3 218459100 218459247 -9065331 + MER103 DNA DNA 13 161 -5 324 0 0 0 chr3 218459346 218459382 -9065196 + (TG)n Simple_repeat Simple_repeat 2 37 0 516 244 86 18 chr3 218460097 218460321 -9064257 - L1MC4 LINE L1 -221 7587 7378 488 16 16 0 chr3 218460539 218460600 -9063978 + (TCTA)n Simple_repeat Simple_repeat 4 65 0 225 209 157 26 chr3 218460738 218460853 -9063725 - L1ME3 LINE L1 -68 6094 5965 229 244 0 0 chr3 218460994 218461039 -9063539 + (TA)n Simple_repeat Simple_repeat 2 46 0 245 233 29 68 chr3 218461040 218461143 -9063435 - MIR SINE MIR -56 206 108 218 236 57 81 chr3 218461467 218461590 -9062988 - MIR SINE MIR -1 261 142 2709 244 33 24 chr3 218462411 218463259 -9061319 - L1ME1 LINE L1 -17 6149 5294 677 258 24 0 chr3 218463256 218463469 -9061109 - L1ME1 LINE L1 -1424 4722 4505 * 757 231 25 38 chr3 218463469 218463707 -9060871 - MLT1E2 LTR MaLR -2 624 390 1617 241 65 22 chr3 218463708 218464442 -9060136 - L1ME1 LINE L1 -2697 3449 2684 539 205 16 16 chr3 218466379 218466501 -9058077 + L3 LINE CR1 648 769 -808 644 80 0 0 chr3 218467219 218467307 -9057271 + L1MA1 LINE L1 6166 6253 -49 389 101 0 14 chr3 218467312 218467381 -9057197 + (CA)n Simple_repeat Simple_repeat 1 68 0 213 351 9 36 chr3 218467834 218467945 -9056633 + MIR SINE MIR 5 112 -150 231 333 48 9 chr3 218468525 218468630 -9055948 + MIR SINE MIR 2 110 -152 396 285 24 0 chr3 218468726 218468849 -9055729 + MIR SINE MIR 137 262 0 241 268 56 0 chr3 218469648 218469719 -9054859 - L3 LINE CR1 -159 1418 1344 216 86 0 0 chr3 218469785 218469820 -9054758 + (CAAA)n Simple_repeat Simple_repeat 2 36 0 606 300 88 25 chr3 218469944 218470184 -9054394 - L3 LINE CR1 -286 1291 1037 334 274 134 45 chr3 218470406 218470563 -9054015 + L2 LINE L2 2988 3158 -155 222 286 0 20 chr3 218470567 218470714 -9053864 + CT-rich Low_complexity Low_complexity 4 147 0 327 244 47 87 chr3 218470727 218470854 -9053724 + L2 LINE L2 3192 3313 0 198 353 7 36 chr3 218472005 218472144 -9052434 - MIR SINE MIR -50 212 78 204 324 116 58 chr3 218472798 218473023 -9051555 - MIR SINE MIR -24 238 1 1902 109 8 4 chr3 218475169 218475463 -9049115 - AluSp SINE Alu 0 315 21 1624 189 3 18 chr3 218475847 218476133 -9048445 + AluJb SINE Alu 1 282 -30 571 188 45 0 chr3 218476204 218476337 -9048241 - L1MA8 LINE L1 -23 6268 6130 1424 130 31 0 chr3 218476352 218476575 -9048003 - MER30 DNA MER1_type 0 230 1 21 82 0 0 chr3 218476850 218476899 -9047679 + AT_rich Low_complexity Low_complexity 1 49 0 335 237 15 76 chr3 218477016 218477147 -9047431 + GA-rich Low_complexity Low_complexity 2 124 0 2640 14 0 0 chr3 218477473 218477765 -9046813 - AluYa5 SINE Alu -4 307 16 332 246 173 9 chr3 218479873 218479983 -9044595 - L2 LINE L2 0 3272 3145 207 325 104 24 chr3 218480198 218480410 -9044168 - L2 LINE L2 -424 2890 2662 441 284 77 24 chr3 218480413 218480621 -9043957 + L1MC/D LINE L1 3 221 -5898 405 319 78 49 chr3 218480654 218481002 -9043576 + L1MC/D LINE L1 4898 5255 -874 281 263 45 112 chr3 218481023 218481449 -9043129 + L1MC/D LINE L1 5294 5680 -2111 2438 24 41 0 chr3 218481449 218481739 -9042839 + AluY SINE Alu 1 302 -9 281 263 45 112 chr3 218481739 218481841 -9042737 + L1MC/D LINE L1 5680 5787 -2004 280 299 102 41 chr3 218481920 218482117 -9042461 - MER63A DNA MER1_type 0 210 2 1501 142 65 55 chr3 218482187 218482462 -9042116 - AluJo SINE Alu -34 278 1 396 152 0 0 chr3 218482544 218482610 -9041968 - L1PA16 LINE L1 -267 5899 5834 * 944 137 166 15 chr3 218482608 218482813 -9041765 + L1PA16 LINE L1 5929 6164 -2 2460 106 22 11 chr3 218483266 218483626 -9040952 - THE1B LTR MaLR 0 364 1 319 363 59 2 chr3 218483994 218484163 -9040415 - MIR SINE MIR -64 144 16 2216 180 38 24 chr3 218484266 218484800 -9039778 - L1MB8 LINE L1 -91 6087 5547 447 218 5 19 chr3 218484916 218485047 -9039531 - L1MA10 LINE L1 -480 5694 5563 * 2500 194 29 40 chr3 218485013 218485623 -9038955 + L1MA10 LINE L1 5720 6333 -1 287 252 0 47 chr3 218485857 218485957 -9038621 + MIR SINE MIR 115 207 -55 306 317 29 0 chr3 218486376 218486480 -9038098 - L2 LINE L2 -1 3271 3165 326 259 47 0 chr3 218486648 218486733 -9037845 + MIR SINE MIR 52 140 -68 685 316 34 75 chr3 218486866 218486925 -9037653 + L2 LINE L2 2550 2610 -703 2169 110 10 0 chr3 218486925 218487233 -9037345 - AluSq SINE Alu -1 312 2 685 316 34 75 chr3 218487233 218487931 -9036647 + L2 LINE L2 2610 3312 -1 26 0 0 0 chr3 218488489 218488515 -9036063 + AT_rich Low_complexity Low_complexity 1 26 0 2861 218 78 20 chr3 218488522 218489389 -9035189 - L1ME1 LINE L1 -19 6147 5231 2193 120 3 3 chr3 218490147 218490456 -9034122 + AluSx SINE Alu 1 309 -3 257 321 63 44 chr3 218490831 218490990 -9033588 + L2 LINE L2 3109 3270 -2 393 263 53 76 chr3 218491703 218491874 -9032704 - MIR3 SINE MIR 0 208 42 * 628 270 52 24 chr3 218491829 218492040 -9032538 + MIR SINE MIR 27 243 -19 265 217 167 0 chr3 218492094 218492154 -9032424 - MIR SINE MIR -117 91 22 2459 80 0 0 chr3 218492727 218493029 -9031549 - AluSc SINE Alu -7 302 1 321 293 76 19 chr3 218493588 218493745 -9030833 + MIR3 SINE MIR 40 205 -3 246 311 68 0 chr3 218494705 218494808 -9029770 - MIR SINE MIR -16 246 137 2043 113 13 13 chr3 218494863 218495173 -9029405 - AluSx SINE Alu -2 310 1 232 282 289 0 chr3 218495811 218495953 -9028625 - MIR SINE MIR -28 234 52 1815 118 8 4 chr3 218496630 218496892 -9027686 - AluSx SINE Alu -5 307 45 206 167 0 24 chr3 218497439 218497481 -9027097 + T-rich Low_complexity Low_complexity 4 44 0 2661 91 6 6 chr3 218498071 218498435 -9026143 - THE1B LTR MaLR 0 364 1 446 265 172 20 chr3 218498735 218498886 -9025692 - MER5A DNA MER1_type -7 182 9 621 311 37 70 chr3 218498899 218499356 -9025222 - MLT1J LTR MaLR -69 442 1 208 289 148 34 chr3 218499421 218499570 -9025008 - MIR SINE MIR 0 262 97 477 240 37 130 chr3 218499581 218499881 -9024697 + L2 LINE L2 3042 3313 0 216 164 73 0 chr3 218500386 218500441 -9024137 + (TATAA)n Simple_repeat Simple_repeat 3 61 0 190 314 203 0 chr3 218500581 218500699 -9023879 - MIR SINE MIR -53 209 68 371 182 0 15 chr3 218500810 218500876 -9023702 + L2 LINE L2 3200 3264 -8 263 245 88 10 chr3 218501002 218501104 -9023474 + MIR SINE MIR 95 204 -58 620 298 171 9 chr3 218501961 218502331 -9022247 - MLT1J2 LTR MaLR -11 435 1 1035 280 73 26 chr3 218502422 218502890 -9021688 + Charlie2b DNA MER1_type 170 659 -2123 284 258 55 8 chr3 218502989 218503117 -9021461 + Charlie2a DNA MER1_type 1466 1599 -1263 23 33 0 0 chr3 218503137 218503167 -9021411 + AT_rich Low_complexity Low_complexity 1 30 0 25 31 0 0 chr3 218503198 218503230 -9021348 + AT_rich Low_complexity Low_complexity 1 32 0 287 283 13 33 chr3 218503265 218503417 -9021161 - HAL1 LINE L1 -107 2400 2252 2137 266 95 52 chr3 218503525 218504953 -9019625 - HAL1 LINE L1 -429 2078 590 450 197 82 16 chr3 218505274 218505396 -9019182 - MLT1I LTR MaLR -273 136 7 405 286 24 0 chr3 218505402 218505528 -9019050 - HAL1 LINE L1 -2209 298 170 2306 106 3 0 chr3 218505598 218505901 -9018677 - AluSx SINE Alu -8 304 1 505 254 175 3 chr3 218505917 218506232 -9018346 + Charlie2a DNA MER1_type 1595 1963 -899 811 320 79 8 chr3 218506345 218506736 -9017842 - MLT1H LTR MaLR -115 434 16 405 237 132 0 chr3 218506751 218506903 -9017675 + Charlie2a DNA MER1_type 1957 2128 -734 26 74 0 0 chr3 218506993 218507047 -9017531 + AT_rich Low_complexity Low_complexity 1 54 0 790 241 81 17 chr3 218507084 218507429 -9017149 + Charlie2a DNA MER1_type 2445 2811 -51 333 288 59 0 chr3 218507718 218507836 -9016742 - MLT1H LTR MaLR -410 139 15 364 194 61 0 chr3 218507860 218507958 -9016620 + Charlie2a DNA MER1_type 1973 2076 -786 748 158 251 23 chr3 218508063 218508322 -9016256 + MER33 DNA MER1_type 5 322 -2 341 192 13 13 chr3 218509507 218509585 -9014993 + MER33 DNA MER1_type 284 361 -2 224 0 65 0 chr3 218509954 218509985 -9014593 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 2110 164 10 13 chr3 218510160 218510543 -9014035 - MLT1B LTR MaLR -8 382 1 347 347 29 23 chr3 218510877 218511050 -9013528 + MIR3 SINE MIR 16 189 -19 204 288 236 29 chr3 218511982 218512295 -9012283 - L2 LINE L2 0 3313 2936 2813 208 14 17 chr3 218512761 218513342 -9011236 - MER7C DNA MER2_type -22 580 2 22 0 0 0 chr3 218514979 218515001 -9009577 + AT_rich Low_complexity Low_complexity 1 22 0 673 242 46 35 chr3 218515096 218515381 -9009197 + L1M4 LINE L1 2262 2549 -3597 1606 241 28 60 chr3 218515434 218516130 -9008448 + L1MC5 LINE L1 6861 7526 -435 233 236 116 86 chr3 218516182 218516415 -9008163 + L1ME3A LINE L1 5922 6161 -9 651 235 86 40 chr3 218516465 218516814 -9007764 + L1MC5 LINE L1 7487 7851 -110 311 200 0 0 chr3 218517229 218517284 -9007294 + Tigger5 DNA MER2_type 1 55 -2268 * 312 194 14 14 chr3 218517253 218517325 -9007253 + Tigger5 DNA MER2_type 2251 2322 -1 531 193 0 0 chr3 218517343 218517431 -9007147 - Tigger5 DNA MER2_type -2235 88 1 420 195 0 23 chr3 218517444 218517531 -9007047 + Tigger5 DNA MER2_type 2239 2323 0 428 291 51 78 chr3 218517819 218518115 -9006463 - L2 LINE L2 -857 2457 2170 1516 115 0 5 chr3 218518252 218518461 -9006117 + AluSg/x SINE Alu 84 291 -19 531 298 153 22 chr3 218519098 218519326 -9005252 - MIR SINE MIR 0 262 5 189 349 12 24 chr3 218519326 218519409 -9005169 - MIR SINE MIR -160 102 21 353 269 0 59 chr3 218521000 218521119 -9003459 + L2 LINE L2 3150 3261 -11 565 328 16 10 chr3 218522786 218522978 -9001600 + MIR SINE MIR 18 210 -52 1960 139 0 10 chr3 218524072 218524374 -9000204 + AluSg SINE Alu 11 309 -1 382 298 24 16 chr3 218525132 218525256 -8999322 + L2 LINE L2 3189 3313 0 261 284 0 53 chr3 218525299 218525402 -8999176 + MIR SINE MIR 35 126 -82 344 302 72 7 chr3 218525769 218525908 -8998670 - MIR3 SINE MIR -45 163 16 295 356 40 69 chr3 218526276 218526523 -8998055 - MIR SINE MIR -16 246 7 2242 261 84 29 chr3 218526922 218527672 -8996906 - MER21B LTR ERV1 -54 809 19 245 320 13 0 chr3 218527694 218527772 -8996806 - MER21B LTR ERV1 -773 90 12 1486 212 26 55 chr3 218528691 218529149 -8995429 - MER65A LTR ERV1 0 445 1 367 324 47 40 chr3 218530584 218530638 -8993940 + MIR SINE MIR 8 60 -202 530 193 14 57 chr3 218530638 218530778 -8993800 + MER94 DNA DNA 1 134 0 367 324 47 40 chr3 218530778 218530975 -8993603 + MIR SINE MIR 60 253 -9 2415 92 3 0 chr3 218531282 218531587 -8992991 - AluSx SINE Alu -6 306 1 360 31 78 0 chr3 218531872 218531936 -8992642 + T-rich Low_complexity Low_complexity 2 70 0 22 94 0 0 chr3 218532611 218532675 -8991903 + AT_rich Low_complexity Low_complexity 1 64 0 285 323 21 0 chr3 218533527 218533623 -8990955 - MIR SINE MIR -61 147 50 308 368 104 18 chr3 218534360 218534580 -8989998 + L1ME LINE L1 5431 5669 -452 22 0 0 0 chr3 218534702 218534724 -8989854 + AT_rich Low_complexity Low_complexity 1 22 0 483 241 184 58 chr3 218535388 218535595 -8988983 + MIR SINE MIR 30 262 0 2242 116 0 6 chr3 218536409 218536720 -8987858 - AluSq SINE Alu -4 309 1 3071 248 69 48 chr3 218536758 218537985 -8986593 - L1ME LINE L1 -552 5681 4396 2017 119 7 14 chr3 218537985 218538278 -8986300 - AluSx SINE Alu -21 291 1 3071 248 69 48 chr3 218538278 218538891 -8985687 - L1ME LINE L1 -1837 4396 3797 1442 98 5 15 chr3 218538904 218539109 -8985469 - AluSq SINE Alu -11 302 100 422 264 66 66 chr3 218539121 218539325 -8985253 - L1ME LINE L1 -2420 3795 3589 2544 49 0 0 chr3 218539325 218539632 -8984946 - AluY SINE Alu -4 307 1 422 264 66 66 chr3 218539632 218539669 -8984909 - L1ME LINE L1 -2625 3590 3554 260 145 48 16 chr3 218589722 218589784 -8934794 - L1ME LINE L1 -4868 1528 1465 23 0 0 0 chr3 218589791 218589814 -8934764 + AT_rich Low_complexity Low_complexity 1 23 0 625 217 13 7 chr3 218589814 218589966 -8934612 - L1ME3 LINE L1 -12 6150 5998 2769 106 74 18 chr3 218589988 218590422 -8934156 + LTR12 LTR ERV1 1 458 -256 949 100 0 0 chr3 218590424 218590554 -8934024 + LTR9B LTR ERV1 515 644 0 584 185 51 89 chr3 218590654 218590735 -8933843 + HUERS-P3b LTR ERV1 409 483 -6935 1812 94 4 8 chr3 218590735 218590980 -8933598 - AluSg SINE Alu -13 297 54 584 185 51 89 chr3 218590980 218591055 -8933523 + HUERS-P3b LTR ERV1 483 559 -6859 6787 126 11 10 chr3 218591062 218592836 -8931742 + HUERS-P3b LTR ERV1 748 2658 -4760 1816 182 46 3 chr3 218592836 218593182 -8931396 - LTR8 LTR ERV1 -292 399 39 688 113 47 0 chr3 218593182 218593288 -8931290 + HUERS-P3b LTR ERV1 2300 2410 -5008 328 152 43 101 chr3 218593555 218593693 -8930885 + HUERS-P3b LTR ERV1 2300 2429 -4989 5456 121 8 11 chr3 218593701 218594531 -8930047 + HUERS-P3b LTR ERV1 3047 3874 -3544 * 14827 118 34 14 chr3 218594530 218597096 -8927482 + HUERS-P3b LTR ERV1 4719 7411 -7 2463 114 44 34 chr3 218597097 218597509 -8927069 + LTR9B LTR ERV1 1 416 -228 2374 188 13 7 chr3 218597517 218597975 -8926603 + Tigger1 DNA MER2_type 1958 2418 0 2599 269 63 52 chr3 218597977 218599186 -8925392 - L1ME LINE L1 -919 5463 4234 234 0 0 0 chr3 218599186 218599212 -8925366 + (CA)n Simple_repeat Simple_repeat 2 27 0 2599 269 63 52 chr3 218599212 218599393 -8925185 - L1ME LINE L1 -2148 4234 4057 185 132 26 0 chr3 218599436 218599474 -8925104 + (TTATA)n Simple_repeat Simple_repeat 5 43 0 36 23 0 0 chr3 218599501 218599544 -8925034 + AT_rich Low_complexity Low_complexity 1 43 0 293 181 60 23 chr3 218599611 218599744 -8924834 + (TA)n Simple_repeat Simple_repeat 1 138 0 274 306 80 18 chr3 218599744 218600192 -8924386 - L1ME LINE L1 -2584 3798 3323 1633 218 121 6 chr3 218600225 218600744 -8923834 - L1ME LINE L1 -4820 1564 986 723 251 41 27 chr3 218600796 218601015 -8923563 - L1ME LINE L1 -5837 535 314 704 313 45 123 chr3 218601110 218602384 -8922194 - L2 LINE L2 -202 3070 1903 1177 245 118 46 chr3 218602467 218603010 -8921568 + MER34C LTR ERV1 4 585 0 2071 126 10 0 chr3 218603124 218603418 -8921160 + AluSq SINE Alu 1 297 -16 1710 188 10 0 chr3 218603484 218603788 -8920790 + AluJo SINE Alu 5 311 -1 721 127 15 8 chr3 218603788 218603922 -8920656 + GA-rich Low_complexity Low_complexity 1 135 0 251 102 0 41 chr3 218603921 218603970 -8920608 + (GAAAA)n Simple_repeat Simple_repeat 5 51 0 * 23 0 0 0 chr3 218604402 218604425 -8920153 + AT_rich Low_complexity Low_complexity 1 23 0 365 283 92 55 chr3 218604498 218604734 -8919844 - MIR SINE MIR 0 262 17 2556 130 81 27 chr3 218605981 218606676 -8917902 + MER4D LTR ERV1 1 779 0 286 366 19 24 chr3 218607209 218607422 -8917156 - HERVL LTR ERVL -700 4954 4743 185 225 0 25 chr3 218608088 218608128 -8916450 - L2 LINE L2 -85 3228 3190 198 255 39 0 chr3 218608355 218608406 -8916172 - L2 LINE L2 -6 3266 3214 36 0 0 0 chr3 218608890 218608926 -8915652 + AT_rich Low_complexity Low_complexity 1 36 0 257 70 47 0 chr3 218609943 218609986 -8914592 + A-rich Low_complexity Low_complexity 3 47 0 21 57 0 0 chr3 218610117 218610152 -8914426 + AT_rich Low_complexity Low_complexity 1 35 0 404 155 24 0 chr3 218610235 218610319 -8914259 + GA-rich Low_complexity Low_complexity 3 88 0 600 331 40 11 chr3 218611242 218611517 -8913061 - L2 LINE L2 -541 2773 2491 807 312 29 52 chr3 218611568 218611914 -8912664 + LTR16C LTR ERVL 79 416 -75 1201 220 59 59 chr3 218612322 218612709 -8911869 + MLT1B LTR MaLR 4 390 0 229 268 21 41 chr3 218612840 218612937 -8911641 + MIR SINE MIR 84 178 -84 1433 276 143 10 chr3 218614574 218615041 -8909537 + L2 LINE L2 1941 2509 -805 4878 129 47 25 chr3 218615041 218615894 -8908684 + MER4D LTR ERV1 1 872 0 1433 276 143 10 chr3 218615894 218616034 -8908544 + L2 LINE L2 2509 2629 -685 471 306 109 6 chr3 218617650 218617833 -8906745 - MLT1L LTR MaLR -87 528 327 367 340 48 0 chr3 218618562 218618709 -8905869 + L1M4 LINE L1 2956 3109 -3037 1290 195 0 32 chr3 218619210 218619461 -8905117 - AluJb SINE Alu -69 243 1 433 366 24 28 chr3 218619528 218619782 -8904796 + L3 LINE CR1 1320 1572 -5 2091 156 92 0 chr3 218619959 218620351 -8904227 + MSTC LTR MaLR 1 428 0 719 306 16 36 chr3 218620621 218620869 -8903709 - MIR SINE MIR 0 262 20 198 118 0 0 chr3 218621621 218621655 -8902923 + (CA)n Simple_repeat Simple_repeat 2 35 0 243 88 0 0 chr3 218621792 218621826 -8902752 + (A)n Simple_repeat Simple_repeat 1 34 0 283 85 0 64 chr3 218622323 218622370 -8902208 - MIR3 SINE MIR -7 201 158 674 288 15 15 chr3 218622382 218622580 -8901998 - MLT2E LTR ERVL -18 610 413 180 320 0 0 chr3 218622619 218622669 -8901909 - MIR SINE MIR -13 249 200 35 24 0 0 chr3 218622691 218622733 -8901845 + AT_rich Low_complexity Low_complexity 1 42 0 610 259 189 44 chr3 218623250 218623678 -8900900 - HAL1 LINE L1 -628 1879 1390 26 50 0 0 chr3 218623698 218623738 -8900840 + AT_rich Low_complexity Low_complexity 1 40 0 818 261 138 42 chr3 218623739 218624164 -8900414 - HAL1 LINE L1 -1227 1280 783 2144 118 3 0 chr3 218624164 218624468 -8900110 - AluSc SINE Alu -4 305 1 818 261 138 42 chr3 218624468 218624620 -8899958 - HAL1 LINE L1 -1724 783 647 264 30 0 0 chr3 218624669 218624702 -8899876 + (TG)n Simple_repeat Simple_repeat 2 34 0 633 381 57 28 chr3 218625147 218625695 -8898883 + L2 LINE L2 2507 3070 -202 281 350 14 35 chr3 218625928 218626071 -8898507 + MIR3 SINE MIR 65 204 -4 2024 175 8 8 chr3 218626103 218626468 -8898110 - Tigger1 DNA MER2_type 0 2418 2054 251 270 54 27 chr3 218626638 218626786 -8897792 - L1ME LINE L1 -271 5850 5699 5009 162 29 38 chr3 218627317 218627892 -8896686 - Tigger1 DNA MER2_type -1443 975 411 1904 121 55 10 chr3 218627892 218628181 -8896397 - AluSx SINE Alu -10 302 1 5009 162 29 38 chr3 218628181 218628588 -8895990 - Tigger1 DNA MER2_type -2007 411 2 228 130 0 0 chr3 218629436 218629482 -8895096 + (T)n Simple_repeat Simple_repeat 1 46 0 212 393 29 7 chr3 218630226 218630366 -8894212 - L2 LINE L2 -240 3032 2890 198 0 0 0 chr3 218630601 218630623 -8893955 + (TG)n Simple_repeat Simple_repeat 2 23 0 282 323 162 18 chr3 218630723 218630890 -8893688 + MIR SINE MIR 72 262 0 1023 146 57 65 chr3 218630959 218631206 -8893372 - L1MA7 LINE L1 -1 6290 6046 23 33 0 0 chr3 218634683 218634713 -8889865 + AT_rich Low_complexity Low_complexity 1 30 0 361 264 62 31 chr3 218634742 218634871 -8889707 - MIR SINE MIR -4 258 126 61 0 0 0 chr3 218634940 218635001 -8889577 + AT_rich Low_complexity Low_complexity 1 61 0 197 32 0 32 chr3 218635003 218635034 -8889544 + (TAAAAA)n Simple_repeat Simple_repeat 3 32 0 50 0 0 0 chr3 218635034 218635084 -8889494 + AT_rich Low_complexity Low_complexity 1 50 0 674 255 25 20 chr3 218635085 218635281 -8889297 - MIR SINE MIR -65 197 1 209 340 38 11 chr3 218636989 218637079 -8887499 + MIR SINE MIR 7 101 -107 305 202 12 0 chr3 218637302 218637386 -8887192 + (TA)n Simple_repeat Simple_repeat 1 85 0 348 338 37 0 chr3 218637546 218637682 -8886896 + MIR SINE MIR 52 192 -70 770 120 0 24 chr3 218638326 218638451 -8886127 + L1PA11 LINE L1 6052 6173 -1 250 306 83 0 chr3 218639823 218639931 -8884647 - L2 LINE L2 -20 3252 3136 227 311 22 0 chr3 218641410 218641500 -8883078 - L1ME4a LINE L1 -66 6055 5964 21 89 0 0 chr3 218641543 218641599 -8882979 + AT_rich Low_complexity Low_complexity 1 56 0 1884 132 22 7 chr3 218641780 218642117 -8882461 - MER61C LTR ERV1 0 434 1 762 61 61 0 chr3 218642195 218642342 -8882236 + (TCTA)n Simple_repeat Simple_repeat 3 158 0 2237 126 41 0 chr3 218642342 218642684 -8881894 + THE1B LTR MaLR 1 356 -8 201 74 0 0 chr3 218642684 218642711 -8881867 + (CTAG)n Simple_repeat Simple_repeat 2 28 0 249 337 11 11 chr3 218642727 218642819 -8881759 + MIR3 SINE MIR 111 202 -6 335 374 23 29 chr3 218643279 218643450 -8881128 - MIR3 SINE MIR -19 189 20 339 340 185 24 chr3 218645293 218645622 -8878956 - L3 LINE CR1 -23 1554 1173 21 0 0 0 chr3 218645766 218645787 -8878791 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr3 218646201 218646228 -8878350 + AT_rich Low_complexity Low_complexity 1 27 0 1669 333 73 26 chr3 218646511 218647515 -8877063 - ERVL LTR ERVL -2943 2821 1771 728 360 66 58 chr3 218647645 218648772 -8875806 - ERVL LTR ERVL -3499 1497 362 225 250 73 59 chr3 218649229 218649365 -8875213 - LTR16C LTR ERVL -194 297 160 187 310 35 0 chr3 218650636 218650694 -8873884 + MIR3 SINE MIR 96 155 -53 451 271 36 21 chr3 218650915 218651055 -8873523 + L2 LINE L2 3172 3313 0 1472 196 38 14 chr3 218651162 218651453 -8873125 - AluJo SINE Alu -14 298 1 1417 211 47 0 chr3 218651568 218652055 -8872523 + AluJo SINE Alu 1 501 0 518 255 46 144 chr3 218652288 218652540 -8872038 + L1MEd LINE L1 462 737 -5382 315 0 0 0 chr3 218652540 218652575 -8872003 + (CA)n Simple_repeat Simple_repeat 2 36 0 518 255 46 144 chr3 218652575 218652789 -8871789 + L1MEd LINE L1 737 971 -5148 1543 186 4 0 chr3 218652789 218653058 -8871520 - AluJb SINE Alu -21 291 22 518 255 46 144 chr3 218653058 218653421 -8871157 + L1MEd LINE L1 971 1210 -4909 24 0 0 0 chr3 218653603 218653627 -8870951 + AT_rich Low_complexity Low_complexity 1 24 0 289 298 70 19 chr3 218653817 218653975 -8870603 + L1MC4a LINE L1 5768 5933 -1875 3528 149 186 115 chr3 218653986 218654942 -8869636 + Tigger3b DNA MER2_type 15 902 -2126 180 0 0 0 chr3 218654942 218654962 -8869616 + (TTTG)n Simple_repeat Simple_repeat 2 21 0 1951 116 18 3 chr3 218654965 218655249 -8869329 - AluSx SINE Alu -24 288 1 3528 149 186 115 chr3 218655249 218655425 -8869153 + Tigger3b DNA MER2_type 903 1231 0 2290 199 39 2 chr3 218655446 218655887 -8868691 + MSTB2 LTR MaLR 1 457 0 1586 157 77 37 chr3 218655908 218656233 -8868345 - MER44D DNA MER2_type -1 608 1 261 0 0 0 chr3 218656335 218656364 -8868214 + (TG)n Simple_repeat Simple_repeat 2 30 0 191 333 37 25 chr3 218656788 218656869 -8867709 + MIR3 SINE MIR 78 159 -49 23 110 0 0 chr3 218658034 218658134 -8866444 + AT_rich Low_complexity Low_complexity 1 100 0 395 211 26 88 chr3 218658333 218658475 -8866103 - L1MC4 LINE L1 -3 8039 7881 417 342 74 28 chr3 218658534 218658897 -8865681 - HERV16 LTR ERVL -4220 776 397 1839 86 4 8 chr3 218658898 218659165 -8865413 - AluSc SINE Alu 0 302 37 945 241 9 18 chr3 218660152 218660380 -8864198 - MLT1D LTR MaLR 0 505 280 211 146 24 0 chr3 218660420 218660461 -8864117 + (TA)n Simple_repeat Simple_repeat 2 43 0 186 151 54 11 chr3 218660483 218660576 -8864002 + (TA)n Simple_repeat Simple_repeat 2 98 0 1644 239 29 6 chr3 218660585 218660932 -8863646 - MLT2D LTR ERVL -48 366 12 1544 109 5 0 chr3 218660937 218661147 -8863431 - AluSq SINE Alu -17 296 86 2394 66 0 7 chr3 218661148 218661452 -8863126 - AluY SINE Alu -9 302 1 1046 248 13 13 chr3 218661474 218661712 -8862866 - MLT1D LTR MaLR -258 247 10 1152 248 4 30 chr3 218661765 218662031 -8862547 - MLT1D-int LTR MaLR -131 1240 982 5233 189 45 11 chr3 218662107 218663281 -8861297 - L1MC1 LINE L1 -12 6601 5389 2425 38 0 0 chr3 218663283 218663570 -8861008 - AluY SINE Alu -24 287 1 5594 245 27 34 chr3 218663627 218664621 -8859957 - L1MC1 LINE L1 -1544 4882 3905 1521 211 29 9 chr3 218664621 218664962 -8859616 + L1PB4 LINE L1 5794 6141 -15 5594 245 27 34 chr3 218664962 218665797 -8858781 - L1MC1 LINE L1 -2521 3905 3066 407 257 48 0 chr3 218665982 218666087 -8858491 - L1MC1 LINE L1 -3379 3047 2938 * 1316 160 62 21 chr3 218666086 218666693 -8857885 - L1MC1 LINE L1 -4050 2376 1702 1295 186 68 8 chr3 218666719 218666955 -8857623 - AluJb SINE Alu -21 291 42 1583 154 30 82 chr3 218666964 218667405 -8857173 - L1MC1 LINE L1 -4865 1561 1144 * 6129 79 9 14 chr3 218667398 218668256 -8856322 + L1PA13 LINE L1 5287 6140 -23 1006 88 0 0 chr3 218668257 218668382 -8856196 + AluY SINE Alu 8 132 -179 180 135 0 0 chr3 218668382 218668419 -8856159 + (A)n Simple_repeat Simple_repeat 1 37 0 4816 189 51 55 chr3 218668420 218669559 -8855019 - L1MC1 LINE L1 -5272 1154 21 245 122 41 20 chr3 218669678 218669727 -8854851 + U2 snRNA snRNA 1 50 -138 1731 233 59 97 chr3 218669730 218670512 -8854066 - MLT1D-int LTR MaLR -518 853 10 1622 264 65 7 chr3 218670527 218670989 -8853589 - MLT1D LTR MaLR -2 503 15 3805 219 47 17 chr3 218671120 218672317 -8852261 - L1MA9 LINE L1 -38 6274 5043 21 0 0 0 chr3 218673565 218673586 -8850992 + AT_rich Low_complexity Low_complexity 1 21 0 1942 187 75 12 chr3 218673592 218673993 -8850585 + MSTB LTR MaLR 1 426 0 400 105 0 0 chr3 218675290 218675347 -8849231 + AluSc SINE Alu 156 212 -97 1892 168 0 0 chr3 218675413 218675710 -8848868 + AluSx SINE Alu 2 298 -14 2080 147 45 33 chr3 218676760 218677183 -8847395 - MSTA LTR MaLR 0 428 1 446 0 19 0 chr3 218677432 218677486 -8847092 + (TTTA)n Simple_repeat Simple_repeat 2 56 0 1911 129 4 7 chr3 218677487 218677766 -8846812 - AluSx SINE Alu -32 280 3 367 317 213 10 chr3 218678171 218678373 -8846205 + MIR SINE MIR 8 250 -12 4036 188 45 9 chr3 218678413 218679590 -8844988 - L1MB1 LINE L1 -54 6178 4845 441 0 0 0 chr3 218679590 218679639 -8844939 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 4036 188 45 9 chr3 218679639 218679774 -8844804 - L1MB1 LINE L1 -1387 4845 4716 828 171 28 74 chr3 218679856 218680032 -8844546 + MER58A DNA MER1_type 26 193 -31 3208 106 20 6 chr3 218680043 218680536 -8844042 - L1PB1 LINE L1 -1 6150 5651 3934 262 25 14 chr3 218680538 218680756 -8843822 - L1MB1 LINE L1 -2429 3781 3567 1988 144 0 7 chr3 218680756 218681054 -8843524 + AluSg SINE Alu 1 296 -14 3934 262 25 14 chr3 218681054 218682159 -8842419 - L1MB1 LINE L1 -2643 3567 2444 2591 280 118 24 chr3 218682168 218683972 -8840606 - L1MB1 LINE L1 -3886 2326 604 813 387 33 0 chr3 218684020 218684410 -8840168 - L1MB1 LINE L1 -5737 404 2 21 36 0 0 chr3 218684991 218685019 -8839559 + AT_rich Low_complexity Low_complexity 1 28 0 21 0 0 0 chr3 218685329 218685350 -8839228 + AT_rich Low_complexity Low_complexity 1 21 0 1632 162 25 0 chr3 218685994 218686150 -8838428 - AluSx SINE Alu -25 287 119 297 0 0 0 chr3 218686150 218686183 -8838395 + (TG)n Simple_repeat Simple_repeat 2 34 0 1632 162 25 0 chr3 218686183 218686304 -8838274 - AluSx SINE Alu -193 119 3 32 43 0 0 chr3 218686310 218686356 -8838222 + AT_rich Low_complexity Low_complexity 1 46 0 726 297 36 62 chr3 218686657 218687155 -8837423 - L1ME LINE L1 -391 5779 5295 365 262 16 8 chr3 218687149 218687271 -8837307 - L1MA10 LINE L1 -3 6331 6209 * 319 333 75 20 chr3 218687270 218687763 -8836815 - L1ME LINE L1 -858 5288 4769 * 2106 67 0 4 chr3 218687907 218688176 -8836402 - AluY SINE Alu -8 303 36 237 316 49 36 chr3 218688601 218688905 -8835673 - L1ME LINE L1 -1975 4171 3864 324 265 0 8 chr3 218689168 218689285 -8835293 - L1ME LINE L1 -2992 3154 3039 24 85 0 0 chr3 218689500 218689559 -8835019 + AT_rich Low_complexity Low_complexity 1 59 0 2936 252 65 7 chr3 218689640 218690967 -8833611 + L1ME1 LINE L1 4765 6160 -6 27 0 0 0 chr3 218690974 218691001 -8833577 + AT_rich Low_complexity Low_complexity 1 27 0 2367 80 0 10 chr3 218691410 218691724 -8832854 + AluSx SINE Alu 1 311 -1 578 247 21 26 chr3 218691889 218692079 -8832499 - AluJb SINE Alu -8 304 116 387 291 134 28 chr3 218692097 218692611 -8831967 - L1MEc LINE L1 -1205 1371 992 716 232 7 0 chr3 218692715 218692866 -8831712 - AluJo SINE Alu -160 152 1 530 272 96 44 chr3 218692965 218693313 -8831265 + MLT1K LTR MaLR 170 553 -35 1673 175 14 45 chr3 218694185 218694540 -8830038 - MER2 DNA MER2_type 0 344 1 1846 250 94 36 chr3 218694582 218695430 -8829148 - L1 LINE L1 -1543 4603 3662 533 314 59 80 chr3 218695472 218695718 -8828860 - L1MEc LINE L1 -5882 514 281 1227 237 42 67 chr3 218695718 218696194 -8828384 + MLT2C2 LTR ERVL 1 464 0 533 314 59 80 chr3 218696194 218696437 -8828141 - L1MEc LINE L1 -6115 281 35 181 371 114 8 chr3 218696591 218696723 -8827855 + MIR SINE MIR 32 177 -85 239 212 35 35 chr3 218696972 218697057 -8827521 + GA-rich Low_complexity Low_complexity 3 87 0 237 298 0 75 chr3 218698069 218698163 -8826415 - L2 LINE L2 -2 3311 3225 24 0 0 0 chr3 218698173 218698197 -8826381 + AT_rich Low_complexity Low_complexity 1 24 0 863 292 93 3 chr3 218698198 218698564 -8826014 - L1MC4 LINE L1 -893 7149 6751 1079 216 28 12 chr3 218698567 218698821 -8825757 + L1MC4 LINE L1 7413 7670 -372 190 355 123 0 chr3 218699507 218699645 -8824933 + MIR SINE MIR 77 231 -31 1319 236 16 28 chr3 218699658 218699980 -8824598 - MLT1C LTR MaLR 0 467 150 915 234 0 0 chr3 218700615 218700799 -8823779 + MLT1E2 LTR MaLR 1 184 -442 * 1793 265 24 35 chr3 218700794 218701334 -8823244 + MLT1E2 LTR MaLR 90 623 -3 357 256 95 45 chr3 218701835 218702077 -8822501 - L1ME4a LINE L1 -27 6094 5841 417 333 42 37 chr3 218702694 218702883 -8821695 - MIR SINE MIR -20 242 53 189 182 20 40 chr3 218702970 218703069 -8821509 + GA-rich Low_complexity Low_complexity 2 98 0 3140 236 97 18 chr3 218704392 218705185 -8819393 - MER45B DNA AcHobo -184 856 1 226 270 100 10 chr3 218706270 218706370 -8818208 - L1ME2 LINE L1 -68 6096 5988 19597 172 28 12 chr3 218706406 218710149 -8814429 + L1M1 LINE L1 13 3816 -3749 422 118 211 0 chr3 218710149 218710225 -8814353 + MSTA LTR MaLR 1 92 -336 563 131 25 74 chr3 218710336 218710458 -8814120 - Tigger1 DNA MER2_type -557 1861 1746 * 1312 139 28 0 chr3 218710455 218710670 -8813908 - Tigger1 DNA MER2_type -1229 1189 969 23 0 0 0 chr3 218712649 218712672 -8811906 + AT_rich Low_complexity Low_complexity 1 23 0 462 306 79 34 chr3 218712672 218713176 -8811402 - L1M4 LINE L1 -1205 3305 881 203 167 0 0 chr3 218713176 218713218 -8811360 + T-rich Low_complexity Low_complexity 1 42 0 1152 254 19 0 chr3 218713448 218713763 -8810815 + L1M1 LINE L1 3816 4136 -3429 2491 86 47 0 chr3 218713763 218714102 -8810476 + THE1A LTR MaLR 1 355 0 586 53 13 0 chr3 218714102 218714178 -8810400 + THE1A-int LTR MaLR 1 77 -1503 848 87 0 39 chr3 218714178 218714305 -8810273 - THE1A LTR MaLR -158 197 76 5070 91 3 6 chr3 218714305 218714978 -8809600 + THE1A-int LTR MaLR 910 1580 0 2573 96 0 30 chr3 218714978 218715215 -8809363 + THE1A LTR MaLR 1 225 -130 2121 136 0 13 chr3 218715215 218715525 -8809053 + AluSx SINE Alu 1 306 -6 2573 96 0 30 chr3 218715525 218715653 -8808925 + THE1A LTR MaLR 225 355 0 3790 189 25 18 chr3 218715656 218716565 -8808013 + L1M1 LINE L1 4135 5050 -2515 861 61 9 0 chr3 218716569 218716684 -8807894 + L1MA1 LINE L1 6183 6298 -4 222 37 0 0 chr3 218716743 218716770 -8807808 + (TC)n Simple_repeat Simple_repeat 1 27 0 478 240 16 31 chr3 218716867 218716996 -8807582 + MER119 DNA MER1_type 457 583 0 268 288 149 42 chr3 218717063 218717278 -8807300 - MLT1J LTR MaLR -7 504 267 312 261 82 37 chr3 218718477 218718611 -8805967 + L1MEd LINE L1 126 265 -5940 342 337 84 24 chr3 218718863 218719198 -8805380 + L1MEd LINE L1 1919 2273 -4123 212 362 12 74 chr3 218719925 218720088 -8804490 + L3 LINE CR1 1318 1470 -107 1771 144 4 4 chr3 218720321 218720584 -8803994 - AluSg SINE Alu -47 263 1 990 122 0 0 chr3 218720584 218720715 -8803863 - AluSq/x SINE Alu -177 135 5 337 250 55 8 chr3 218720957 218721085 -8803493 + L1ME4a LINE L1 5984 6117 -4 383 296 142 0 chr3 218725031 218725204 -8799374 - MIR SINE MIR -56 206 11 445 65 22 87 chr3 218726639 218726824 -8797754 + (TA)n Simple_repeat Simple_repeat 2 174 0 1214 284 100 59 chr3 218726849 218727516 -8797062 + L1MEc LINE L1 790 1428 -4968 6271 161 32 21 chr3 218727516 218728395 -8796183 - Tigger3b DNA MER2_type -1797 1231 364 441 0 0 0 chr3 218728395 218728444 -8796134 + (TCTA)n Simple_repeat Simple_repeat 4 52 0 6271 161 32 21 chr3 218728444 218728495 -8796083 - Tigger3b DNA MER2_type -2664 364 315 2029 121 7 3 chr3 218728495 218728785 -8795793 + AluSg SINE Alu 1 291 -19 6271 161 32 21 chr3 218728785 218729069 -8795509 - Tigger3b DNA MER2_type -2713 315 2 1214 284 100 59 chr3 218729069 218729282 -8795296 + L1MEc LINE L1 1428 1631 -4765 2224 106 3 16 chr3 218729282 218729593 -8794985 + AluSc SINE Alu 1 307 -2 1214 284 100 59 chr3 218729593 218730377 -8794201 + L1MEc LINE L1 1631 2523 -3873 315 299 155 11 chr3 218730388 218730575 -8794003 + L1MEc LINE L1 2550 2763 -3452 1154 220 36 80 chr3 218730621 218730985 -8793593 + MLT1D LTR MaLR 22 369 -136 531 268 62 55 chr3 218730986 218731431 -8793147 - L1MCc LINE L1 -4467 2519 1936 1106 204 131 36 chr3 218731501 218731776 -8792802 - AluJo SINE Alu 0 302 2 1817 268 58 26 chr3 218731876 218732717 -8791861 - L1MCc LINE L1 -4890 1533 832 228 309 99 37 chr3 218733023 218733185 -8791393 - L1MCc LINE L1 -5988 435 264 943 302 63 21 chr3 218733404 218734119 -8790459 + L1MEc LINE L1 2759 3503 -2712 1002 257 201 7 chr3 218734121 218734530 -8790048 - MLT1E1 LTR MaLR -2 652 165 691 159 9 0 chr3 218734633 218734746 -8789832 + AluSq/x SINE Alu 11 124 -188 22 35 0 0 chr3 218734746 218734775 -8789803 + AT_rich Low_complexity Low_complexity 1 29 0 383 269 54 0 chr3 218734787 218734880 -8789698 - MLT1E1 LTR MaLR -556 98 1 1454 268 46 38 chr3 218734880 218735618 -8788960 + L1MEc LINE L1 3499 4242 -1973 1076 258 54 3 chr3 218735632 218735985 -8788593 + L1 LINE L1 2652 3022 -4543 1036 163 5 35 chr3 218735985 218736188 -8788390 - Tigger1 DNA MER2_type 0 2418 2222 1040 210 6 0 chr3 218736188 218736369 -8788209 + 7SLRNA srpRNA srpRNA 58 239 -81 772 261 120 23 chr3 218736385 218736684 -8787894 - L1M3e LINE L1 -5188 1842 1515 460 143 0 0 chr3 218736725 218736795 -8787783 + FAM SINE Alu 104 173 -12 2378 171 25 23 chr3 218736822 218737262 -8787316 - Tigger2 DNA MER2_type 0 2718 2278 429 119 0 0 chr3 218737268 218737327 -8787251 - Tigger2 DNA MER2_type -2659 59 1 1543 196 33 54 chr3 218737327 218737755 -8786823 + L1 LINE L1 4768 5186 -2379 1229 225 57 17 chr3 218738386 218738684 -8785894 + AluJo SINE Alu 1 310 -2 614 313 24 20 chr3 218738990 218739239 -8785339 + MIR SINE MIR 13 262 0 628 184 14 7 chr3 218739295 218739442 -8785136 + CT-rich Low_complexity Low_complexity 2 149 0 316 67 0 0 chr3 218740242 218740287 -8784291 - MADE1 DNA Mariner -2 78 34 315 331 25 25 chr3 218740528 218740688 -8783890 - L2 LINE L2 -3 3310 3151 918 129 0 0 chr3 218740917 218741057 -8783521 + L1PA13 LINE L1 6013 6152 -11 304 337 66 31 chr3 218741850 218742046 -8782532 - MIR SINE MIR -56 206 4 2050 125 10 3 chr3 218744028 218744333 -8780245 - AluSq SINE Alu -6 307 1 575 77 10 87 chr3 218746053 218746157 -8778421 + AluSc SINE Alu 197 292 -17 189 340 0 0 chr3 218746257 218746310 -8778268 - L2 LINE L2 -16 3256 3204 1635 193 56 21 chr3 218746414 218746788 -8777790 - MLT1B LTR MaLR -1 389 3 473 282 61 12 chr3 218746856 218747019 -8777559 + MIR SINE MIR 10 180 -82 2801 123 0 24 chr3 218747269 218747725 -8776853 + HERVH LTR ERV1 2551 2995 -4718 949 133 7 0 chr3 218747704 218747854 -8776724 + HERVH LTR ERV1 3140 3290 -4423 * 3292 112 6 6 chr3 218747844 218748346 -8776232 + HERVH LTR ERV1 3492 3993 -3720 4326 143 0 1 chr3 218748348 218749011 -8775567 + HERVH LTR ERV1 4488 5149 -2564 1325 122 23 14 chr3 218749008 218749229 -8775349 + HERVH LTR ERV1 5597 5819 -1894 * 2481 84 45 13 chr3 218749227 218749607 -8774971 + HERVH LTR ERV1 7322 7713 0 913 76 8 15 chr3 218749607 218749739 -8774839 + LTR7 LTR ERV1 1 131 -319 385 280 33 20 chr3 218750216 218750403 -8774175 + L1M4c LINE L1 1558 1876 -4637 360 0 0 0 chr3 218750409 218750449 -8774129 + (CA)n Simple_repeat Simple_repeat 2 41 0 25 21 0 43 chr3 218750500 218750522 -8774056 + AT_rich Low_complexity Low_complexity 1 22 -23 4467 60 39 3 chr3 218750522 218751108 -8773470 - LTR14B LTR ERVK -1 607 1 25 21 0 43 chr3 218751108 218751132 -8773446 + AT_rich Low_complexity Low_complexity 22 45 0 1498 252 43 16 chr3 218751146 218751722 -8772856 + L1M4c LINE L1 2097 2688 -3875 23 42 0 21 chr3 218751861 218751881 -8772697 + AT_rich Low_complexity Low_complexity 1 20 -27 2209 100 0 0 chr3 218751881 218752171 -8772407 + AluY SINE Alu 1 290 -21 23 42 0 21 chr3 218752171 218752198 -8772380 + AT_rich Low_complexity Low_complexity 20 47 0 303 228 0 0 chr3 218752693 218752873 -8771705 + (TA)n Simple_repeat Simple_repeat 1 180 0 274 254 236 18 chr3 218752939 218753049 -8771529 - MIR SINE MIR -50 212 79 231 315 102 24 chr3 218753700 218753827 -8770751 - MIR3 SINE MIR -11 197 61 22 43 0 21 chr3 218754723 218754744 -8769834 + AT_rich Low_complexity Low_complexity 1 21 -25 1385 201 26 52 chr3 218754744 218755053 -8769525 + AluJo SINE Alu 1 301 -11 22 43 0 21 chr3 218755053 218755078 -8769500 + AT_rich Low_complexity Low_complexity 21 46 0 548 358 67 24 chr3 218755212 218755586 -8768992 - MLT1I LTR MaLR -14 395 6 2026 140 60 20 chr3 218755593 218755943 -8768635 + THE1B LTR MaLR 1 364 0 4902 116 29 4 chr3 218755943 218756669 -8767909 + THE1B-int LTR MaLR 1 744 -836 25 51 0 0 chr3 218757216 218757255 -8767323 + AT_rich Low_complexity Low_complexity 1 39 0 27 29 0 0 chr3 218757418 218757452 -8767126 + AT_rich Low_complexity Low_complexity 1 34 0 1268 154 30 0 chr3 218757452 218757685 -8766893 + L1MA2 LINE L1 6045 6284 -20 21 0 0 0 chr3 218758142 218758163 -8766415 + AT_rich Low_complexity Low_complexity 1 21 0 201 154 0 0 chr3 218758466 218758505 -8766073 + T-rich Low_complexity Low_complexity 1 39 0 28 48 0 0 chr3 218759465 218759507 -8765071 + AT_rich Low_complexity Low_complexity 1 42 0 214 250 0 0 chr3 218760438 218760506 -8764072 + (TTATA)n Simple_repeat Simple_repeat 5 72 0 1922 143 67 14 chr3 218760776 218761132 -8763446 - THE1C LTR MaLR 0 375 1 437 298 60 6 chr3 218761444 218761612 -8762966 + MIR SINE MIR 21 197 -65 1863 175 45 14 chr3 218761615 218761970 -8762608 + MSTA LTR MaLR 1 366 -62 24 0 0 0 chr3 218761970 218761994 -8762584 + AT_rich Low_complexity Low_complexity 1 24 0 183 248 58 66 chr3 218762488 218762609 -8761969 + L3b LINE CR1 1329 1448 -135 21 0 0 0 chr3 218762615 218762636 -8761942 + AT_rich Low_complexity Low_complexity 1 21 0 180 0 0 0 chr3 218762751 218762771 -8761807 + (TAAA)n Simple_repeat Simple_repeat 1 20 0 217 345 149 18 chr3 218762939 218763107 -8761471 - MIR SINE MIR -50 212 23 626 85 11 0 chr3 218765898 218765992 -8758586 + (TCTA)n Simple_repeat Simple_repeat 2 96 0 25 0 0 0 chr3 218766632 218766657 -8757921 + AT_rich Low_complexity Low_complexity 1 25 0 475 107 24 0 chr3 218766839 218766923 -8757655 + GA-rich Low_complexity Low_complexity 2 87 0 198 0 0 0 chr3 218767213 218767235 -8757343 + (CGAGG)n Simple_repeat Simple_repeat 2 23 0 1859 103 26 45 chr3 218767826 218768137 -8756441 + AluSx SINE Alu 1 305 -7 234 269 74 27 chr3 218768683 218768832 -8755746 - L1M4 LINE L1 -2688 3458 3303 226 319 11 32 chr3 218768953 218769047 -8755531 + MIR SINE MIR 124 215 -47 1003 123 19 0 chr3 218769414 218769576 -8755002 - L1MA6 LINE L1 -4 6296 6132 875 61 0 0 chr3 218769576 218769690 -8754888 + AluY SINE Alu 193 306 -5 543 194 9 0 chr3 218769690 218769798 -8754780 - L1MA6 LINE L1 -157 6143 6035 21 0 0 0 chr3 218769956 218769977 -8754601 + AT_rich Low_complexity Low_complexity 1 21 0 206 250 0 0 chr3 218770356 218770396 -8754182 + (TATATG)n Simple_repeat Simple_repeat 3 42 0 1451 184 47 0 chr3 218770412 218770732 -8753846 - L1MC2 LINE L1 -9 6335 6001 24 53 0 0 chr3 218771010 218771048 -8753530 + AT_rich Low_complexity Low_complexity 1 38 0 330 260 136 71 chr3 218771048 218771217 -8753361 - MIR SINE MIR -62 200 21 320 304 22 0 chr3 218772128 218772220 -8752358 - L1MC4 LINE L1 -1339 6703 6610 2157 84 30 3 chr3 218773710 218773939 -8750639 - AluSc SINE Alu 0 359 117 344 39 0 39 chr3 218773939 218773990 -8750588 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 2157 84 30 3 chr3 218773990 218774108 -8750470 - AluSc SINE Alu -242 117 4 536 239 90 18 chr3 218774326 218774493 -8750085 + MIR3 SINE MIR 30 208 0 2130 119 3 6 chr3 218775543 218775855 -8748723 - AluSx SINE Alu -1 311 1 842 142 0 47 chr3 218776698 218776846 -8747732 + AluSc SINE Alu 142 282 -27 2232 106 0 0 chr3 218776857 218777165 -8747413 + AluSx SINE Alu 1 308 0 319 239 0 0 chr3 218777506 218777577 -8747001 + MLT1K LTR MaLR 518 588 0 2108 113 0 20 chr3 218777882 218778221 -8746357 + AluSx SINE Alu 1 312 0 447 209 78 43 chr3 218778320 218778433 -8746145 + MLT1G1 LTR MaLR 431 547 -48 542 247 89 7 chr3 218778433 218778579 -8745999 - MER20 DNA MER1_type 0 219 62 304 271 87 98 chr3 218778900 218779166 -8745412 - L1MC2 LINE L1 -289 5832 5570 22 35 0 0 chr3 218779286 218779315 -8745263 + AT_rich Low_complexity Low_complexity 1 29 0 183 204 0 0 chr3 218779333 218779377 -8745201 + (TG)n Simple_repeat Simple_repeat 2 45 0 600 233 58 145 chr3 218779497 218779832 -8744746 - MLT1G1 LTR MaLR -297 233 1 22 35 0 0 chr3 218780017 218780046 -8744532 + AT_rich Low_complexity Low_complexity 1 29 0 21 0 0 0 chr3 218780226 218780247 -8744331 + AT_rich Low_complexity Low_complexity 1 21 0 252 302 134 34 chr3 218780360 218780509 -8744069 + MIR3 SINE MIR 34 197 -11 225 341 23 64 chr3 218780854 218781027 -8743551 + L2 LINE L2 2923 3088 -184 256 390 101 6 chr3 218781271 218781440 -8743138 - L3 LINE CR1 -102 1475 1291 1318 79 0 0 chr3 218781759 218781936 -8742642 - L1PA13 LINE L1 -6 6157 5981 210 344 39 26 chr3 218782933 218783087 -8741491 + MIR SINE MIR 21 176 -86 210 150 0 0 chr3 218784062 218784102 -8740476 + (CAAAAA)n Simple_repeat Simple_repeat 2 41 0 1778 183 0 10 chr3 218785275 218785564 -8739014 + AluJo SINE Alu 1 286 -26 263 271 0 0 chr3 218786702 218786772 -8737806 + (TA)n Simple_repeat Simple_repeat 2 71 0 261 169 0 39 chr3 218787117 218787194 -8737384 + (TA)n Simple_repeat Simple_repeat 1 74 0 239 265 117 43 chr3 218787558 218787815 -8736763 + L1ME LINE L1 5582 5857 -264 371 325 37 12 chr3 218787954 218788117 -8736461 + L3 LINE CR1 1317 1483 -94 213 384 20 0 chr3 218788512 218788611 -8735967 + MIR SINE MIR 42 142 -66 249 119 0 0 chr3 218788700 218788742 -8735836 + (TG)n Simple_repeat Simple_repeat 1 42 0 378 364 129 26 chr3 218789709 218790321 -8734257 + L2 LINE L2 1930 2604 -710 353 258 84 98 chr3 218790418 218790513 -8734065 + L1M4 LINE L1 2805 2900 -3246 1831 125 18 4 chr3 218790513 218790785 -8733793 + AluSx SINE Alu 1 276 -36 353 258 84 98 chr3 218790785 218791046 -8733532 + L1M4 LINE L1 2900 3156 -2990 21 0 0 0 chr3 218791172 218791193 -8733385 + AT_rich Low_complexity Low_complexity 1 21 0 194 325 76 68 chr3 218791895 218792144 -8732434 + L2 LINE L2 2146 2396 -918 285 118 0 0 chr3 218792147 218792198 -8732380 + (T)n Simple_repeat Simple_repeat 1 51 0 3928 231 19 19 chr3 218793015 218794003 -8730575 - L1PA13 LINE L1 -4520 2267 1280 1041 203 5 50 chr3 218794171 218794393 -8730185 - AluJo SINE Alu -31 281 70 2086 122 7 3 chr3 218794537 218794832 -8729746 - AluSx SINE Alu -16 296 1 544 53 11 95 chr3 218795316 218795436 -8729142 + L1PA6 LINE L1 6068 6154 0 1534 170 13 56 chr3 218795467 218795773 -8728805 + AluSx SINE Alu 1 293 -19 444 335 113 4 chr3 218796138 218796368 -8728210 + MIR SINE MIR 5 259 -3 392 312 243 5 chr3 218796410 218796612 -8727966 + MIR SINE MIR 3 252 -10 251 141 31 153 chr3 218796701 218796832 -8727746 - L1MA9 LINE L1 -7 6327 6199 782 289 101 10 chr3 218796845 218797233 -8727345 + L1ME3 LINE L1 5734 6156 -6 21 36 0 0 chr3 218797233 218797261 -8727317 + AT_rich Low_complexity Low_complexity 1 28 0 372 314 142 10 chr3 218797330 218797534 -8727044 + MIR SINE MIR 19 249 -13 23 33 0 0 chr3 218797539 218797569 -8727009 + AT_rich Low_complexity Low_complexity 1 30 0 4755 179 21 21 chr3 218798166 218799578 -8725000 - L1PA16 LINE L1 -16 6150 4740 446 168 21 0 chr3 218799625 218799720 -8724858 - L1MA8 LINE L1 -4 6287 6191 1736 162 19 25 chr3 218799851 218800165 -8724413 + AluSx SINE Alu 1 312 0 2597 241 44 9 chr3 218800172 218800905 -8723673 - L1MD2 LINE L1 -20 6599 5842 1925 65 11 4 chr3 218800900 218801160 -8723418 - L1P3 LINE L1 -4778 1683 1422 * 5200 110 4 12 chr3 218801260 218802014 -8722564 - L1P3 LINE L1 -5567 894 147 1951 229 37 36 chr3 218802014 218802845 -8721733 - L1MD2 LINE L1 -771 5731 4822 228 223 45 36 chr3 218802847 218802959 -8721619 - L1MD2 LINE L1 -1671 4735 4623 219 88 0 0 chr3 218802970 218803004 -8721574 + (TTTTA)n Simple_repeat Simple_repeat 2 35 0 789 152 6 61 chr3 218803022 218803187 -8721391 - AluJo SINE Alu -44 268 113 338 293 26 47 chr3 218803187 218803378 -8721200 - L1MD2 LINE L1 -1814 4592 4406 258 325 13 0 chr3 218803378 218803455 -8721123 + CT-rich Low_complexity Low_complexity 2 79 0 685 187 39 55 chr3 218803456 218803638 -8720940 - L1MD2 LINE L1 -1951 4455 4277 1260 286 122 9 chr3 218803641 218804393 -8720185 - L1MD2 LINE L1 -2185 4221 3385 1260 221 41 43 chr3 218804393 218805099 -8719479 - L1MD2 LINE L1 -3580 2826 2124 2617 211 36 64 chr3 218805101 218806083 -8718495 - L1MD2 LINE L1 -4795 1611 659 1610 262 56 25 chr3 218806294 218806809 -8717769 - L1MD2 LINE L1 -5870 539 9 30 0 0 0 chr3 218807129 218807159 -8717419 + AT_rich Low_complexity Low_complexity 1 30 0 21 0 0 0 chr3 218807212 218807233 -8717345 + AT_rich Low_complexity Low_complexity 1 21 0 306 0 0 0 chr3 218809596 218809630 -8714948 + (GA)n Simple_repeat Simple_repeat 1 34 0 358 357 63 0 chr3 218810259 218810385 -8714193 + LTR16C LTR ERVL 107 240 -251 369 208 21 97 chr3 218810385 218810529 -8714049 + MLT1B LTR MaLR 1 133 -257 2082 117 0 32 chr3 218810703 218811012 -8713566 + AluSx SINE Alu 1 299 -13 189 0 0 0 chr3 218811898 218811919 -8712659 + (T)n Simple_repeat Simple_repeat 1 21 0 234 125 0 0 chr3 218812849 218812897 -8711681 + (TTTG)n Simple_repeat Simple_repeat 2 49 0 2086 103 0 45 chr3 218812900 218813210 -8711368 - AluSq SINE Alu -17 296 1 2013 113 0 0 chr3 218813244 218813537 -8711041 - L1PA13 LINE L1 -4 6159 5867 461 300 9 82 chr3 218814844 218815077 -8709501 - MIR SINE MIR -8 254 39 221 287 148 9 chr3 218815129 218815237 -8709341 + L2 LINE L2 3159 3281 -32 294 29 0 0 chr3 218815237 218815272 -8709306 + (CA)n Simple_repeat Simple_repeat 2 36 0 1441 308 53 8 chr3 218815407 218815992 -8708586 + L1MEc LINE L1 35 645 -5751 539 185 19 0 chr3 218816107 218816215 -8708363 - L1MA9 LINE L1 -22 6290 6181 1952 183 43 2 chr3 218816220 218816506 -8708072 - L1MA9 LINE L1 -233 6079 5771 360 0 0 0 chr3 218816506 218816546 -8708032 + (CA)n Simple_repeat Simple_repeat 2 41 0 1952 183 43 2 chr3 218816546 218816657 -8707921 - L1MA9 LINE L1 -541 5771 5666 240 319 43 7 chr3 218816727 218816868 -8707710 + L1MEc LINE L1 781 926 -5470 933 217 26 9 chr3 218817155 218817385 -8707193 - AluJo SINE Alu -78 234 1 373 287 40 57 chr3 218817385 218817789 -8706789 + L1MEc LINE L1 1688 2084 -4312 7594 29 1 0 chr3 218817811 218818812 -8705766 + L1PA4 LINE L1 5154 6155 0 753 171 0 14 chr3 218818820 218818960 -8705618 + L1PA15 LINE L1 6024 6161 -4 238 266 63 70 chr3 218819232 218819375 -8705203 - MIR SINE MIR -73 189 48 2260 137 25 8 chr3 218820785 218821143 -8703435 + THE1B LTR MaLR 1 364 0 9751 117 33 43 chr3 218821144 218822740 -8701838 + THE1B-int LTR MaLR 2 1580 0 616 155 60 17 chr3 218822740 218822856 -8701722 + THE1B LTR MaLR 1 121 -254 3535 102 4 10 chr3 218822958 218823456 -8701122 + THE1B-int LTR MaLR 1086 1580 0 2019 151 51 20 chr3 218823459 218823810 -8700768 + THE1B LTR MaLR 3 364 0 394 219 128 27 chr3 218824447 218824634 -8699944 + L1MEc LINE L1 2736 2941 -3274 5933 42 157 23 chr3 218824663 218825542 -8699036 - L1P LINE L1 -5131 1015 19 4050 15 2 0 chr3 218825542 218826009 -8698569 + L1PA3 LINE L1 5688 6155 0 392 234 84 69 chr3 218826171 218826250 -8698328 + L1MEc LINE L1 3104 3180 -3035 2539 47 3 0 chr3 218826250 218826546 -8698032 + AluY SINE Alu 1 297 -14 392 234 84 69 chr3 218826546 218826786 -8697792 + L1MEc LINE L1 3180 3428 -2787 2923 55 10 3 chr3 218826898 218827281 -8697297 - LTR7 LTR ERV1 -64 386 1 6355 221 27 107 chr3 218827282 218827321 -8697257 + L1PA15 LINE L1 1685 1726 -4420 1876 139 0 66 chr3 218827321 218827653 -8696925 + AluSx SINE Alu 1 310 -2 6355 221 27 107 chr3 218827653 218829571 -8695007 + L1PA15 LINE L1 1726 3263 -2883 6856 227 18 10 chr3 218829571 218832021 -8692557 + L1PA15 LINE L1 3700 6165 0 6355 221 27 107 chr3 218832021 218833377 -8691201 + L1PA15 LINE L1 3263 4726 -1420 1486 228 6 0 chr3 218833375 218833699 -8690879 + L1MEc LINE L1 3902 4227 -1988 * 492 225 47 0 chr3 218833691 218833820 -8690758 + L1MA4 LINE L1 6160 6294 -6 * 229 264 66 137 chr3 218834252 218834479 -8690099 + THE1B LTR MaLR 218 428 0 3682 173 43 10 chr3 218834483 218835204 -8689374 + THE1B-int LTR MaLR 5 749 -902 * 7449 168 20 12 chr3 218835196 218837123 -8687455 + L1PB1 LINE L1 1332 3317 -3545 8888 184 10 6 chr3 218837130 218838119 -8686459 + L1PB1 LINE L1 4130 5113 -1754 194 0 39 0 chr3 218838119 218838145 -8686433 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 8888 184 10 6 chr3 218838145 218839879 -8684699 + L1PB1 LINE L1 5113 6867 0 5814 196 16 7 chr3 218840382 218841439 -8683139 + MSTA-int LTR MaLR 585 1651 0 2187 150 67 12 chr3 218841439 218841845 -8682733 + MSTA LTR MaLR 1 428 0 2076 129 21 63 chr3 218843708 218844088 -8680490 + THE1B LTR MaLR 1 364 0 9745 116 32 64 chr3 218844088 218845721 -8678857 + THE1B-int LTR MaLR 1 1580 0 2110 147 25 14 chr3 218845721 218846081 -8678497 + THE1B LTR MaLR 1 364 0 1579 240 126 6 chr3 218846135 218846493 -8678085 + MLT1F1 LTR MaLR 5 405 -162 325 275 28 18 chr3 218846568 218846677 -8677901 + MER103 DNA DNA 2 111 -55 222 333 67 50 chr3 218847343 218847463 -8677115 - MIR SINE MIR -138 124 3 420 250 54 138 chr3 218848159 218848383 -8676195 + MIR SINE MIR 12 216 -46 22 0 0 0 chr3 218849713 218849735 -8674843 + AT_rich Low_complexity Low_complexity 1 22 0 200 297 68 14 chr3 218849870 218849944 -8674634 + L2 LINE L2 3153 3230 -42 326 364 29 7 chr3 218850244 218850384 -8674194 - L2 LINE L2 -181 3091 2949 735 80 0 54 chr3 218851749 218851905 -8672673 - AluY SINE Alu 0 326 177 2173 73 19 60 chr3 218852362 218852679 -8671899 + AluY SINE Alu 1 304 -7 513 96 12 12 chr3 218853802 218853885 -8670693 + THE1C-int LTR MaLR 1498 1580 0 1970 129 58 30 chr3 218853885 218854250 -8670328 + THE1C LTR MaLR 1 375 0 456 354 88 2 chr3 218854531 218854888 -8669690 + ERVL LTR ERVL 4199 4630 -1117 559 310 54 30 chr3 218854944 218855331 -8669247 + ERVL LTR ERVL 4666 5117 -647 2162 84 3 18 chr3 218855616 218855900 -8668678 + AluY SINE Alu 2 281 -30 194 0 39 0 chr3 218855911 218855937 -8668641 + (TAAAA)n Simple_repeat Simple_repeat 2 28 0 526 297 104 18 chr3 218856071 218856431 -8668147 + LTR16A LTR ERVL 18 436 -14 192 297 69 69 chr3 218856433 218856534 -8668044 - MIR SINE MIR -160 102 2 23 54 0 0 chr3 218857069 218857106 -8667472 + AT_rich Low_complexity Low_complexity 1 37 0 5250 170 14 6 chr3 218857597 218858572 -8666006 + L1P LINE L1 3690 4672 -1474 751 171 0 0 chr3 218858907 218859036 -8665542 + AluSp/q SINE Alu 175 303 -10 206 297 0 62 chr3 218859149 218859213 -8665365 - L3b LINE CR1 -5 1578 1519 21 0 0 0 chr3 218859912 218859933 -8664645 + AT_rich Low_complexity Low_complexity 1 21 0 400 267 136 52 chr3 218860301 218860552 -8664026 + L1MC5 LINE L1 7640 7911 -50 477 305 47 16 chr3 218861158 218861348 -8663230 - MIR SINE MIR -1 261 66 22 35 0 0 chr3 218861608 218861637 -8662941 + AT_rich Low_complexity Low_complexity 1 29 0 256 236 32 122 chr3 218862216 218862339 -8662239 - L1MC/D LINE L1 -2250 5558 5447 27 81 0 0 chr3 218862880 218862942 -8661636 + AT_rich Low_complexity Low_complexity 1 62 0 314 157 0 0 chr3 218863770 218863821 -8660757 - MSTA LTR MaLR 0 428 378 469 188 12 0 chr3 218863821 218863906 -8660672 + MSTA LTR MaLR 337 422 -6 2192 107 10 0 chr3 218863963 218864261 -8660317 - AluSx SINE Alu -11 301 1 1174 214 13 17 chr3 218864690 218864989 -8659589 + AluSx SINE Alu 15 312 0 294 276 47 8 chr3 218864992 218865119 -8659459 + L1ME LINE L1 5726 5857 -264 246 218 69 35 chr3 218867497 218867584 -8656994 - MIR SINE MIR -109 153 64 2545 150 21 7 chr3 218869056 218869475 -8655103 + MER61B LTR ERV1 1 425 0 313 284 106 7 chr3 218870155 218870296 -8654282 + MLT1K LTR MaLR 427 581 -7 30 83 0 0 chr3 218870590 218870662 -8653916 + AT_rich Low_complexity Low_complexity 1 72 0 24 0 0 0 chr3 218872225 218872249 -8652329 + AT_rich Low_complexity Low_complexity 1 24 0 320 287 11 21 chr3 218873015 218873109 -8651469 - MIR3 SINE MIR -34 174 82 287 359 11 0 chr3 218873120 218873212 -8651366 + L2 LINE L2 3158 3250 -22 183 162 0 0 chr3 218873240 218873277 -8651301 + (TGAA)n Simple_repeat Simple_repeat 3 39 0 21 57 0 0 chr3 218873450 218873485 -8651093 + AT_rich Low_complexity Low_complexity 1 35 0 39 68 0 0 chr3 218875055 218875129 -8649449 + AT_rich Low_complexity Low_complexity 1 74 0 1575 148 39 24 chr3 218875566 218875716 -8648862 + L1MA5 LINE L1 5960 6106 -194 2363 191 14 0 chr3 218875716 218876136 -8648442 - MSTB LTR MaLR 0 426 1 1575 148 39 24 chr3 218876136 218876316 -8648262 + L1MA5 LINE L1 6106 6295 -5 359 192 117 17 chr3 218876414 218876535 -8648043 + L1ME1 LINE L1 3594 3726 -2420 290 223 45 9 chr3 218876540 218876652 -8647926 + L1ME1 LINE L1 3797 3912 -2234 2007 248 42 19 chr3 218876659 218877284 -8647294 + L1ME1 LINE L1 5523 6161 -5 233 265 59 0 chr3 218878390 218878458 -8646120 + MIR SINE MIR 90 161 -101 223 174 0 0 chr3 218878756 218878802 -8645776 + A-rich Low_complexity Low_complexity 3 48 0 199 171 49 12 chr3 218879190 218879272 -8645306 + (TA)n Simple_repeat Simple_repeat 1 85 0 381 361 37 43 chr3 218879586 218879885 -8644693 - LTR16A LTR ERVL -129 321 25 1323 335 64 16 chr3 218880140 218880993 -8643585 - ERVL LTR ERVL -611 4874 3989 21 57 0 0 chr3 218881296 218881331 -8643247 + AT_rich Low_complexity Low_complexity 1 35 0 2082 264 60 2 chr3 218881348 218881864 -8642714 + MLT1F1 LTR MaLR 1 546 -21 21 0 0 0 chr3 218883117 218883138 -8641440 + AT_rich Low_complexity Low_complexity 1 21 0 14827 152 38 14 chr3 218883414 218886068 -8638510 + Tigger2 DNA MER2_type 1 2718 0 885 278 75 0 chr3 218886289 218886516 -8638062 - MIR SINE MIR -3 259 16 32 86 0 0 chr3 218886682 218886763 -8637815 + AT_rich Low_complexity Low_complexity 1 81 0 23 0 0 0 chr3 218887026 218887049 -8637529 + AT_rich Low_complexity Low_complexity 1 23 0 260 0 0 0 chr3 218887168 218887202 -8637376 - L1MA3 LINE L1 -2 6303 6270 1422 171 99 16 chr3 218887203 218887507 -8637071 + THE1C LTR MaLR 1 329 -46 2145 31 8 0 chr3 218887507 218887764 -8636814 + AluYa5 SINE Alu 45 303 -8 328 193 0 0 chr3 218888296 218888353 -8636225 + THE1C LTR MaLR 372 428 0 10055 128 32 8 chr3 218888353 218889897 -8634681 + THE1C-int LTR MaLR 1 1580 0 1695 174 84 14 chr3 218889897 218890241 -8634337 + THE1C LTR MaLR 1 368 -7 1756 141 17 14 chr3 218890243 218890534 -8634044 - L1MA3 LINE L1 -37 6268 5977 216 0 0 0 chr3 218890563 218890587 -8633991 + (TAA)n Simple_repeat Simple_repeat 1 24 0 1403 230 21 3 chr3 218890758 218891049 -8633529 - AluJo SINE Alu -16 296 1 534 299 116 59 chr3 218891729 218892783 -8631795 + L1ME3A LINE L1 4232 5345 -801 1700 245 24 81 chr3 218892812 218893395 -8631183 - MLT1F1 LTR MaLR -13 554 5 386 281 75 36 chr3 218893892 218894130 -8630448 + L1ME3A LINE L1 5592 5834 -336 4926 191 16 14 chr3 218894142 218894905 -8629673 - L1PA16 LINE L1 0 6166 5406 2102 135 0 0 chr3 218894905 218895202 -8629376 - AluSg SINE Alu -13 297 1 4926 191 16 14 chr3 218895202 218895489 -8629089 - L1PA16 LINE L1 -760 5406 5121 8492 56 7 8 chr3 218895489 218896562 -8628016 + MER11C LTR ERVK 1 1071 0 4926 191 16 14 chr3 218896562 218896594 -8627984 - L1PA16 LINE L1 -1045 5121 5091 2052 146 122 8 chr3 218896594 218896978 -8627600 + MSTA LTR MaLR 1 428 0 8683 158 8 47 chr3 218896978 218897519 -8627059 + MSTA-int LTR MaLR 1 562 -1018 213 39 0 0 chr3 218897519 218897545 -8627033 + (CAA)n Simple_repeat Simple_repeat 2 27 0 8683 158 8 47 chr3 218897545 218898647 -8625931 + MSTA-int LTR MaLR 562 1580 0 1979 145 135 11 chr3 218898647 218899026 -8625552 + MSTA LTR MaLR 1 426 -2 4926 191 16 14 chr3 218899026 218899707 -8624871 - L1PA16 LINE L1 -1074 5092 4399 1957 224 13 0 chr3 218899715 218900165 -8624413 - L1PA16 LINE L1 -2457 3689 3234 1906 212 46 35 chr3 218900170 218900651 -8623927 - MER66B LTR ERV1 0 486 1 2193 151 3 8 chr3 218900651 218901003 -8623575 - MER66B-int LTR ERV1 0 6676 6327 5245 295 40 29 chr3 218901003 218904004 -8620574 - PRIMA41-int LTR ERV1 -1505 6251 3288 366 42 0 0 chr3 218905183 218905231 -8619347 + (GA)n Simple_repeat Simple_repeat 1 48 0 282 322 158 6 chr3 218906360 218906537 -8618041 - MIR SINE MIR -11 251 48 7327 48 0 0 chr3 218907002 218908005 -8616573 - L1PA5 LINE L1 -1 6153 5151 3290 53 0 0 chr3 218908005 218908420 -8616158 + L1P LINE L1 3342 3756 -2390 608 96 0 11 chr3 218908892 218908986 -8615592 + (GGAA)n Simple_repeat Simple_repeat 2 94 0 492 250 97 19 chr3 218909030 218909246 -8615332 + MER106A DNA MER1_type 4 236 0 221 311 146 0 chr3 218909736 218909839 -8614739 + L2 LINE L2 2941 3058 -214 198 0 0 0 chr3 218911162 218911184 -8613394 + (TTTG)n Simple_repeat Simple_repeat 3 24 0 7896 128 16 74 chr3 218911304 218911564 -8613014 + Tigger1 DNA MER2_type 1043 1317 -1101 14052 22 0 0 chr3 218911564 218913965 -8610613 - L1PA2 LINE L1 -4 6151 3747 7896 128 16 74 chr3 218913965 218915165 -8609413 + Tigger1 DNA MER2_type 1317 2418 0 1916 217 43 16 chr3 218915226 218915973 -8608605 - L1M4 LINE L1 -575 5609 4843 * 2040 59 4 15 chr3 218915964 218916236 -8608342 + L1PA10 LINE L1 5713 5981 -187 1311 225 3 66 chr3 218916475 218916696 -8607882 - AluJo SINE Alu 0 312 117 1839 96 4 0 chr3 218916696 218916957 -8607621 - L1PA7 LINE L1 0 6154 5893 1311 225 3 66 chr3 218916957 218917068 -8607510 - AluJo SINE Alu -195 117 1 251 361 98 27 chr3 218918185 218918368 -8606210 - MIR SINE MIR -18 244 49 23 0 0 0 chr3 218918384 218918407 -8606171 + AT_rich Low_complexity Low_complexity 1 23 0 235 235 51 10 chr3 218920366 218920464 -8604114 + (TATATG)n Simple_repeat Simple_repeat 3 104 0 508 285 87 42 chr3 218920911 218921315 -8603263 + L1MC3 LINE L1 4895 5316 -830 1890 126 0 0 chr3 218921315 218921764 -8602814 + AluSq SINE Alu 28 313 0 744 145 7 20 chr3 218921764 218921884 -8602694 + GA-rich Low_complexity Low_complexity 1 120 -30 870 38 0 0 chr3 218921884 218921990 -8602588 + L1PA3 LINE L1 6050 6155 0 744 145 7 20 chr3 218921990 218922021 -8602557 + GA-rich Low_complexity Low_complexity 120 150 0 834 267 68 32 chr3 218922021 218922646 -8601932 + L1MC3 LINE L1 5321 5998 -164 654 286 45 43 chr3 218922755 218923262 -8601316 + L1M4 LINE L1 3769 4276 -1870 314 263 97 63 chr3 218923494 218923669 -8600909 - MIR3 SINE MIR -11 197 17 1618 123 38 0 chr3 218924714 218924949 -8599629 - AluSx SINE Alu -68 244 1 1394 231 23 23 chr3 218925930 218926276 -8598302 - LTR31 LTR ERV1 -200 419 74 333 0 0 0 chr3 218926687 218926724 -8597854 + (CA)n Simple_repeat Simple_repeat 2 38 0 27 73 0 0 chr3 218926746 218926801 -8597777 + AT_rich Low_complexity Low_complexity 1 55 0 590 227 33 0 chr3 218927200 218927350 -8597228 + L1M4 LINE L1 3416 3570 -2576 19090 214 26 26 chr3 218927365 218931946 -8592632 + L1PA11 LINE L1 7 5137 -2447 318 26 0 0 chr3 218931946 218931985 -8592593 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 19090 214 26 26 chr3 218931985 218933267 -8591311 + L1PA11 LINE L1 5137 6418 -1166 5542 127 13 1 chr3 218933367 218934209 -8590369 + L1PA11 LINE L1 6757 7608 -4 304 272 18 9 chr3 218934222 218934336 -8590242 + L1M4 LINE L1 3588 3702 -2444 22 70 0 0 chr3 218934892 218934935 -8589643 + AT_rich Low_complexity Low_complexity 1 43 0 225 280 84 49 chr3 218935219 218935362 -8589216 - L2 LINE L2 -882 2432 2285 306 289 113 31 chr3 218936705 218936899 -8587679 - L1MEc LINE L1 -4453 2685 2476 1560 290 54 34 chr3 218937110 218937927 -8586651 - L1MEc LINE L1 -4587 2372 1540 1054 232 16 20 chr3 218937947 218938197 -8586381 - L1MEc LINE L1 -5452 1407 1159 233 57 0 0 chr3 218938198 218938233 -8586345 - Alu SINE Alu -2 298 264 1423 205 60 10 chr3 218938233 218938535 -8586043 - L1MEc LINE L1 -5688 1171 855 225 0 0 0 chr3 218938547 218938572 -8586006 + (A)n Simple_repeat Simple_repeat 1 25 0 2009 142 23 0 chr3 218938578 218938880 -8585698 + AluSq SINE Alu 3 311 -2 333 339 43 0 chr3 218940513 218940628 -8583950 - L2 LINE L2 0 3272 3153 292 143 0 0 chr3 218941230 218941279 -8583299 + MER94 DNA DNA 3 51 -83 248 290 50 50 chr3 218941300 218941400 -8583178 + MIR SINE MIR 156 255 -7 23 0 0 0 chr3 218941793 218941816 -8582762 + AT_rich Low_complexity Low_complexity 1 23 0 242 221 73 15 chr3 218941816 218941884 -8582694 - MIR SINE MIR -5 257 186 323 286 66 0 chr3 218942006 218942097 -8582481 + MIR SINE MIR 29 125 -137 2090 92 0 4 chr3 218942146 218942439 -8582139 + AluSx SINE Alu 13 304 0 825 122 17 0 chr3 218943584 218943699 -8580879 + FLAM_C SINE Alu 11 127 -16 22 56 0 0 chr3 218944009 218944045 -8580533 + AT_rich Low_complexity Low_complexity 1 36 0 1087 218 64 17 chr3 218944557 218944855 -8579723 - L1ME1 LINE L1 -5 6161 5850 1252 37 87 0 chr3 218944857 218945018 -8579560 - AluY SINE Alu -17 294 120 3487 262 82 37 chr3 218945051 218946980 -8577598 - L1ME1 LINE L1 -1520 4626 2611 14553 182 36 9 chr3 218947072 218952280 -8572298 + L1MA3 LINE L1 2349 7722 -2 24 53 0 0 chr3 218952418 218952456 -8572122 + AT_rich Low_complexity Low_complexity 1 38 0 250 359 17 0 chr3 218953180 218953297 -8571281 - L2 LINE L2 0 3313 3195 251 287 16 123 chr3 218953457 218953579 -8570999 + L2 LINE L2 3205 3313 0 1902 114 4 0 chr3 218953613 218953868 -8570710 + AluSc SINE Alu 15 270 -39 32 0 0 0 chr3 218953874 218953906 -8570672 + AT_rich Low_complexity Low_complexity 1 32 0 21 0 0 0 chr3 218954077 218954098 -8570480 + AT_rich Low_complexity Low_complexity 1 21 0 367 293 64 14 chr3 218954553 218954693 -8569885 + MLT1L LTR MaLR 80 226 -389 228 234 0 0 chr3 218954729 218954776 -8569802 + CT-rich Low_complexity Low_complexity 2 48 0 252 198 74 37 chr3 218954826 218954907 -8569671 + MLT1K LTR MaLR 499 582 -6 252 280 102 38 chr3 218955340 218955497 -8569081 + LTR67 LTR ERVL 387 553 -4 224 204 61 0 chr3 218956274 218956323 -8568255 - L3b LINE CR1 0 1583 1532 378 342 62 60 chr3 218957615 218958083 -8566495 + L2 LINE L2 2804 3272 0 1332 237 79 47 chr3 218958322 218958582 -8565996 - MER90 LTR ERV1 0 575 325 210 37 0 0 chr3 218958582 218958609 -8565969 + (GA)n Simple_repeat Simple_repeat 2 28 0 1332 237 79 47 chr3 218958609 218958896 -8565682 - MER90 LTR ERV1 -250 325 7 186 43 0 0 chr3 218958896 218958919 -8565659 + (TTG)n Simple_repeat Simple_repeat 2 24 0 1302 308 21 19 chr3 218959259 218959681 -8564897 + LTR16A LTR ERVL 27 449 -1 457 250 61 27 chr3 218959682 218959830 -8564748 + HERV16 LTR ERVL 1 153 -4843 807 199 0 82 chr3 218959908 218960104 -8564474 - MER20 DNA MER1_type 0 219 40 364 305 119 37 chr3 218961362 218961452 -8563126 + L1ME LINE L1 4564 4645 -1501 2123 128 0 0 chr3 218961452 218961741 -8562837 + AluSg SINE Alu 1 289 -21 364 305 119 37 chr3 218961741 218962221 -8562357 + L1ME LINE L1 4645 5181 -965 39081 73 23 2 chr3 218962225 218968250 -8556328 - L1PA5 LINE L1 0 6154 3 464 285 32 65 chr3 218968352 218968661 -8555917 + L1ME LINE L1 5294 5592 -578 1817 156 46 39 chr3 218968815 218969226 -8555352 - L1MA7 LINE L1 -84 6207 5794 257 333 78 26 chr3 218969684 218969821 -8554757 - HERVL LTR ERVL -2339 3315 3164 3272 109 8 0 chr3 218969821 218970309 -8554269 - L1PB2 LINE L1 -2 6149 5658 257 333 78 26 chr3 218970309 218970363 -8554215 - HERVL LTR ERVL -2490 3164 3114 515 115 0 35 chr3 218970369 218970456 -8554122 - MLT1A1 LTR MaLR -281 84 1 271 189 19 0 chr3 218970492 218970545 -8554033 - HERVL LTR ERVL -2093 2903 2850 351 62 15 31 chr3 218970587 218970652 -8553926 + (TA)n Simple_repeat Simple_repeat 2 65 0 1021 325 55 36 chr3 218970793 218971353 -8553225 - HERVL LTR ERVL -2979 2785 2215 1911 286 106 24 chr3 218973797 218974524 -8550054 - L2 LINE L2 -5 3308 2465 356 213 0 0 chr3 218974524 218974604 -8549974 - MER116 DNA Mariner 0 80 1 1911 286 106 24 chr3 218974604 218974923 -8549655 - L2 LINE L2 -848 2465 2174 577 242 37 25 chr3 218974988 218975149 -8549429 + MIR SINE MIR 48 210 -52 732 220 74 47 chr3 218975149 218975408 -8549170 + MLT1A1 LTR MaLR 1 275 -121 313 122 20 0 chr3 218975529 218975578 -8549000 + MLT1A1 LTR MaLR 408 457 0 182 253 96 60 chr3 218975969 218976052 -8548526 - L2 LINE L2 -10 3262 3177 490 303 94 21 chr3 218976053 218976287 -8548291 + MIR SINE MIR 2 252 -10 1525 241 37 67 chr3 218976679 218977215 -8547363 + MLT2B1 LTR ERVL 1 520 0 499 313 0 0 chr3 218977372 218977500 -8547078 + MLT1L LTR MaLR 104 231 -384 12927 262 14 6 chr3 218977502 218978225 -8546353 - HERVL LTR ERVL -1416 4348 3632 1131 151 225 77 chr3 218978225 218978550 -8546028 - THE1C LTR MaLR -2 373 1 12927 262 14 6 chr3 218978550 218981641 -8542937 - HERVL LTR ERVL -2132 3632 269 550 252 177 46 chr3 218981751 218981793 -8542785 + MLT1L LTR MaLR 305 340 -171 2248 118 0 3 chr3 218981793 218982099 -8542479 - AluSq SINE Alu -8 305 1 550 252 177 46 chr3 218982099 218982330 -8542248 + MLT1L LTR MaLR 340 511 0 184 368 40 0 chr3 218983474 218983550 -8541028 - L2 LINE L2 -5 3308 3230 292 331 151 6 chr3 218983890 218984062 -8540516 - L2 LINE L2 -1912 1402 1206 279 300 73 0 chr3 218984064 218984174 -8540404 + MLT1D LTR MaLR 1 118 -387 2790 39 0 0 chr3 218984264 218984602 -8539976 - L1PA4 LINE L1 0 6155 5818 736 290 74 34 chr3 218984603 218984982 -8539596 + MLT1D LTR MaLR 112 505 0 412 379 82 0 chr3 218984985 218985228 -8539350 - L2 LINE L2 -2127 1187 925 748 192 23 0 chr3 218985881 218986011 -8538567 - Tigger7 DNA MER2_type 0 2491 2359 3344 201 20 5 chr3 218986038 218986680 -8537898 - Tigger7 DNA MER2_type -81 652 1 26 0 0 0 chr3 218987357 218987383 -8537195 + AT_rich Low_complexity Low_complexity 1 26 0 218 161 18 18 chr3 218987755 218987811 -8536767 + (TTAAA)n Simple_repeat Simple_repeat 3 58 0 370 297 198 6 chr3 218987868 218988050 -8536528 - MIR SINE MIR 0 262 46 195 260 39 39 chr3 218989196 218989273 -8535305 + MIR3 SINE MIR 126 202 -6 251 282 273 10 chr3 218990316 218990525 -8534053 - L3 LINE CR1 -199 1378 1115 354 215 13 0 chr3 218990881 218990960 -8533618 - MIR3 SINE MIR -38 170 91 615 193 0 76 chr3 218991483 218991654 -8532924 + L1MA9 LINE L1 5772 5929 -383 324 241 12 0 chr3 218991939 218992022 -8532556 + MIR3 SINE MIR 91 174 -34 1841 179 21 8 chr3 218992100 218992474 -8532104 + L1MA9 LINE L1 5933 6311 -1 336 231 132 114 chr3 218992476 218992940 -8531638 - MLT1H1 LTR MaLR -44 511 40 216 97 0 0 chr3 218992951 218992982 -8531596 + (CA)n Simple_repeat Simple_repeat 2 32 0 28 48 0 0 chr3 218993411 218993453 -8531125 + AT_rich Low_complexity Low_complexity 1 42 0 290 352 60 20 chr3 218993921 218994120 -8530458 - L1ME LINE L1 -521 5600 5394 201 213 0 0 chr3 218994189 218994236 -8530342 + (CATATA)n Simple_repeat Simple_repeat 2 48 0 232 294 0 22 chr3 218994239 218994331 -8530247 + L1MC4 LINE L1 6614 6703 -1339 385 216 0 55 chr3 218994331 218994512 -8530066 + (CATATA)n Simple_repeat Simple_repeat 4 174 0 2087 115 13 25 chr3 218995126 218995440 -8529138 - AluSx SINE Alu -2 310 1 192 280 0 20 chr3 218995788 218995838 -8528740 + L2 LINE L2 3224 3272 0 278 346 0 31 chr3 218996029 218996156 -8528422 + MIR3 SINE MIR 85 207 -1 300 157 100 29 chr3 218997499 218997569 -8527009 - MER5C DNA MER1_type -248 76 2 670 298 88 23 chr3 218997569 218998064 -8526514 + MER115 DNA AcHobo 51 683 -10 1651 197 0 3 chr3 218998112 218998407 -8526171 + AluJo SINE Alu 1 294 -18 278 357 111 16 chr3 218998931 218999057 -8525521 + L2 LINE L2 3134 3271 -1 21 36 0 0 chr3 219000395 219000423 -8524155 + AT_rich Low_complexity Low_complexity 1 28 0 215 364 16 0 chr3 219000432 219000553 -8524025 - MIR SINE MIR -2 260 138 2044 109 0 0 chr3 219000574 219000848 -8523730 - AluSq SINE Alu -39 274 1 23 33 0 0 chr3 219001109 219001139 -8523439 + AT_rich Low_complexity Low_complexity 1 30 0 25 0 0 0 chr3 219001917 219001942 -8522636 + AT_rich Low_complexity Low_complexity 1 25 0 186 340 47 9 chr3 219002939 219003045 -8521533 - L2 LINE L2 -37 3235 3126 1575 142 110 0 chr3 219004361 219004642 -8519936 + AluSx SINE Alu 1 312 0 920 238 50 21 chr3 219004726 219005007 -8519571 - L1ME3 LINE L1 -1 6161 5873 44 35 0 0 chr3 219005099 219005157 -8519421 + AT_rich Low_complexity Low_complexity 1 58 0 1263 317 37 4 chr3 219005217 219005677 -8518901 - HERVL40 LTR ERVL -860 4670 4196 865 202 56 0 chr3 219005679 219005854 -8518724 - MER31A LTR ERV1 -1 484 300 1625 184 50 37 chr3 219005854 219006245 -8518333 - MSTA LTR MaLR 0 428 1 521 172 16 167 chr3 219006246 219006357 -8518221 - MER31A LTR ERV1 -182 303 231 5187 67 30 0 chr3 219006357 219007058 -8517520 - LTR30 LTR ERV1 0 722 1 521 172 16 167 chr3 219007058 219007138 -8517440 - MER31A LTR ERV1 -254 231 141 365 213 0 0 chr3 219007190 219007251 -8517327 + MER2 DNA MER2_type 285 345 0 553 311 52 24 chr3 219007271 219007728 -8516850 + L1M4 LINE L1 2374 2843 -3303 231 324 9 0 chr3 219007773 219007881 -8516697 + L1M4 LINE L1 3533 3641 -2505 1657 200 40 3 chr3 219007894 219008219 -8516359 + MSTB LTR MaLR 1 337 -89 788 230 6 0 chr3 219008220 219008398 -8516180 + MST-int LTR MaLR 515 693 -958 468 187 42 15 chr3 219008398 219008522 -8516056 + MSTB1 LTR MaLR 292 426 -6 7964 188 26 35 chr3 219008528 219010193 -8514385 + MSTB-int LTR MaLR 1 1651 0 2154 189 29 7 chr3 219010193 219010610 -8513968 + MSTB LTR MaLR 1 426 0 304 329 35 7 chr3 219010660 219010803 -8513775 + L1M2 LINE L1 3633 3779 -2367 2376 25 0 3 chr3 219011707 219011990 -8512588 + L1PA2 LINE L1 5870 6151 -4 704 152 8 0 chr3 219013420 219013552 -8511026 + (CA)n Simple_repeat Simple_repeat 1 133 0 198 177 32 16 chr3 219014042 219014104 -8510474 + (TA)n Simple_repeat Simple_repeat 2 64 0 412 216 45 0 chr3 219014107 219014195 -8510383 - L1MC4 LINE L1 -1339 6703 6612 1344 199 8 0 chr3 219014567 219014808 -8509770 + AluJo SINE Alu 40 282 -30 445 321 42 21 chr3 219014840 219015080 -8509498 + L1M4c LINE L1 1612 1856 -4528 784 239 46 34 chr3 219015111 219015532 -8509046 + L1M4c LINE L1 1984 2415 -3967 6980 209 8 7 chr3 219015535 219017304 -8507274 + L1M2 LINE L1 3770 5538 -743 236 213 100 0 chr3 219017336 219017416 -8507162 - L1MC4 LINE L1 -1340 6702 6615 396 190 0 0 chr3 219017460 219017539 -8507039 + (TATATG)n Simple_repeat Simple_repeat 2 80 0 297 0 0 0 chr3 219017539 219017572 -8507006 + (CA)n Simple_repeat Simple_repeat 2 34 0 1089 289 90 30 chr3 219017595 219018062 -8506516 + LTR33 LTR ERVL 27 521 0 27 29 0 0 chr3 219018286 219018320 -8506258 + AT_rich Low_complexity Low_complexity 1 34 0 302 231 132 33 chr3 219019101 219019192 -8505386 - L2 LINE L2 0 3272 3173 231 270 0 0 chr3 219019732 219019795 -8504783 + L1ME3A LINE L1 6103 6165 -5 181 263 70 0 chr3 219019817 219019874 -8504704 - L2 LINE L2 -22 3291 3231 43 20 0 0 chr3 219019985 219020035 -8504543 + AT_rich Low_complexity Low_complexity 1 50 0 211 337 23 12 chr3 219020372 219020458 -8504120 + L2 LINE L2 3186 3272 0 1120 205 8 30 chr3 219021131 219021365 -8503213 + MIR SINE MIR 13 241 -21 792 277 35 9 chr3 219022917 219023148 -8501430 - MIR SINE MIR -21 241 5 196 325 77 34 chr3 219023270 219023387 -8501191 - L2 LINE L2 -36 3236 3115 2081 138 0 0 chr3 219023914 219024218 -8500360 - AluSx SINE Alu -8 304 1 1978 147 0 3 chr3 219024255 219024576 -8500002 - AluSx SINE Alu 0 320 1 189 107 0 0 chr3 219024677 219024705 -8499873 + (TTG)n Simple_repeat Simple_repeat 2 29 0 756 289 208 6 chr3 219024752 219025084 -8499494 + MLT1G1 LTR MaLR 1 399 -196 681 244 39 77 chr3 219025257 219025491 -8499087 - MIR SINE MIR -1 261 37 281 347 36 31 chr3 219025610 219025806 -8498772 + LTR16B LTR ERVL 6 202 -262 310 283 115 9 chr3 219025836 219025949 -8498629 + LTR16A LTR ERVL 319 443 -7 10092 73 18 10 chr3 219026027 219027377 -8497201 - SVA Other Other 0 1386 27 205 234 21 0 chr3 219027852 219027899 -8496679 + G-rich Low_complexity Low_complexity 4 51 0 43 71 0 0 chr3 219028026 219028111 -8496467 + AT_rich Low_complexity Low_complexity 1 85 0 1221 343 51 25 chr3 219028956 219029606 -8494972 - HERV16 LTR ERVL -3803 1193 527 889 324 46 8 chr3 219029653 219030024 -8494554 - HERV16 LTR ERVL -4595 401 17 22 0 0 0 chr3 219030937 219030959 -8493619 + AT_rich Low_complexity Low_complexity 1 22 0 472 257 114 24 chr3 219031065 219031275 -8493303 + L1ME3 LINE L1 5934 6162 0 249 218 90 13 chr3 219031657 219031735 -8492843 - L1MEd LINE L1 -6032 87 4 302 295 0 0 chr3 219031961 219032039 -8492539 + GA-rich Low_complexity Low_complexity 2 79 0 304 186 51 0 chr3 219032901 219032960 -8491618 + L1MB3 LINE L1 5423 5484 -694 363 192 0 0 chr3 219032960 219033033 -8491545 + (TA)n Simple_repeat Simple_repeat 1 73 0 3547 158 30 35 chr3 219033033 219033678 -8490900 + L1MB3 LINE L1 5489 6132 -51 2174 97 27 3 chr3 219033678 219033976 -8490602 - AluSc SINE Alu 0 309 5 3547 158 30 35 chr3 219033976 219034026 -8490552 + L1MB3 LINE L1 6132 6181 -2 1608 177 10 30 chr3 219035518 219035823 -8488755 - AluJb SINE Alu -13 299 1 250 337 43 0 chr3 219036803 219036895 -8487683 - L2 LINE L2 -9 3304 3209 333 357 75 46 chr3 219036965 219037099 -8487479 - L2 LINE L2 -125 3188 3059 1377 189 111 24 chr3 219037099 219037433 -8487145 + MLT1A1 LTR MaLR 1 363 -2 333 357 75 46 chr3 219037433 219037671 -8486907 - L2 LINE L2 -254 3059 2805 2352 60 10 0 chr3 219037749 219038051 -8486527 - AluY SINE Alu -6 305 1 3401 309 109 49 chr3 219038508 219038866 -8485712 - L2 LINE L2 0 3313 2978 2618 36 7 0 chr3 219038866 219039171 -8485407 + AluSp SINE Alu 1 307 -6 3401 309 109 49 chr3 219039171 219039189 -8485389 - L2 LINE L2 -335 2978 2963 1549 92 180 4 chr3 219039189 219039439 -8485139 + AluSg1 SINE Alu 1 294 -15 3401 309 109 49 chr3 219039439 219039954 -8484624 - L2 LINE L2 -350 2963 2480 1431 250 16 19 chr3 219039954 219040326 -8484252 - MLT1A2 LTR MaLR 0 374 4 3401 309 109 49 chr3 219040326 219041495 -8483083 - L2 LINE L2 -833 2480 1091 245 261 34 68 chr3 219042538 219042626 -8481952 - MIR3 SINE MIR -43 165 81 1634 237 19 3 chr3 219042959 219043318 -8481260 - MLT1A1 LTR MaLR 0 365 1 186 167 0 0 chr3 219043500 219043536 -8481042 + (TA)n Simple_repeat Simple_repeat 2 37 0 217 217 17 17 chr3 219043558 219043618 -8480960 + (TA)n Simple_repeat Simple_repeat 2 61 0 187 350 0 25 chr3 219044344 219044424 -8480154 - L2 LINE L2 -1 3271 3194 523 372 50 38 chr3 219044594 219045073 -8479505 + L2 LINE L2 2491 2975 -339 275 372 61 0 chr3 219046667 219046831 -8477747 - MIR3 SINE MIR -3 205 32 2097 48 18 15 chr3 219046835 219047010 -8477568 - AluY SINE Alu -5 306 128 207 0 0 0 chr3 219047010 219047033 -8477545 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 2097 48 18 15 chr3 219047033 219047130 -8477448 - AluY SINE Alu -183 128 33 5016 110 20 1 chr3 219047676 219048433 -8476145 - L1PA13 LINE L1 -4 6159 5389 * 13136 180 23 67 chr3 219048419 219048998 -8475580 - L1PA13 LINE L1 -980 5166 4563 2150 103 0 10 chr3 219048998 219049330 -8475248 + AluSq SINE Alu 4 332 0 13136 180 23 67 chr3 219049330 219049597 -8474981 - L1PA13 LINE L1 -1583 4563 4286 317 44 0 0 chr3 219049597 219049642 -8474936 + AluY SINE Alu 257 301 -1 13136 180 23 67 chr3 219049642 219049729 -8474849 - L1PA13 LINE L1 -1860 4286 4197 577 128 0 0 chr3 219049729 219049823 -8474755 - AluSg/x SINE Alu -8 304 211 13136 180 23 67 chr3 219049823 219051908 -8472670 - L1PA13 LINE L1 -1949 4197 2144 497 205 9 9 chr3 219051907 219052019 -8472559 + L1P LINE L1 1581 1692 -4454 * 189 74 0 0 chr3 219052087 219052114 -8472464 + (TAAAAA)n Simple_repeat Simple_repeat 6 32 0 328 268 12 12 chr3 219052201 219052283 -8472295 - MIR SINE MIR -66 142 61 2214 119 3 0 chr3 219052679 219052990 -8471588 - AluSx SINE Alu 0 312 1 25 51 0 0 chr3 219053220 219053259 -8471319 + AT_rich Low_complexity Low_complexity 1 39 0 374 275 58 24 chr3 219053382 219053589 -8470989 + L1M4 LINE L1 4490 4703 -1443 752 288 64 9 chr3 219053741 219053974 -8470604 + MIR SINE MIR 16 261 -1 3239 247 39 93 chr3 219053984 219054660 -8469918 - L1M4 LINE L1 -2182 5383 4672 955 126 0 0 chr3 219054660 219054803 -8469775 - AluSg/x SINE Alu -1 311 169 3239 247 39 93 chr3 219054803 219055070 -8469508 - L1M4 LINE L1 -2893 4672 4392 2180 129 0 0 chr3 219055070 219055380 -8469198 - AluSq SINE Alu -3 310 1 3239 247 39 93 chr3 219055380 219057364 -8467214 - L1M4 LINE L1 -3173 4392 2534 * 4474 271 75 12 chr3 219057349 219058655 -8465923 - L1M3c LINE L1 -4743 1398 11 1425 118 3 81 chr3 219059193 219059489 -8465089 - HSMAR2 DNA Mariner -1 1301 1029 3154 121 18 8 chr3 219059497 219059994 -8464584 - HSMAR2 DNA Mariner -799 503 2 756 323 91 22 chr3 219060188 219060649 -8463929 - LTR33 LTR ERVL -28 493 1 189 356 140 15 chr3 219061552 219061816 -8462762 + L2 LINE L2 2213 2509 -805 841 247 18 0 chr3 219061823 219061993 -8462585 - LTR16A LTR ERVL -6 444 272 295 377 86 14 chr3 219062160 219062531 -8462047 + L2 LINE L2 2495 2892 -422 1207 283 81 33 chr3 219063138 219063619 -8460959 - MLT1D LTR MaLR 0 505 2 34 84 0 0 chr3 219063651 219063734 -8460844 + AT_rich Low_complexity Low_complexity 1 83 0 210 212 0 30 chr3 219063752 219063818 -8460760 + (TA)n Simple_repeat Simple_repeat 2 65 0 28 86 0 0 chr3 219063911 219063981 -8460597 + AT_rich Low_complexity Low_complexity 1 70 0 2167 127 0 0 chr3 219064058 219064357 -8460221 - AluSx SINE Alu -13 299 1 557 124 10 0 chr3 219064545 219064642 -8459936 + (TAGA)n Simple_repeat Simple_repeat 4 101 0 295 272 98 39 chr3 219065249 219065503 -8459075 + L1ME3A LINE L1 1107 1375 -5009 848 296 102 63 chr3 219065674 219066360 -8458218 + L1ME3A LINE L1 1728 2440 -4123 516 290 98 34 chr3 219066414 219066855 -8457723 + L1ME3A LINE L1 2481 2949 -3433 1228 256 107 50 chr3 219066893 219067433 -8457145 + L1ME3A LINE L1 5816 6386 -20 222 171 0 0 chr3 219067462 219067503 -8457075 + (TA)n Simple_repeat Simple_repeat 1 41 0 1874 181 31 3 chr3 219067512 219067865 -8456713 - MER47A DNA MER2_type -1 365 3 342 0 0 0 chr3 219067865 219067903 -8456675 + (TG)n Simple_repeat Simple_repeat 1 38 0 1348 161 108 53 chr3 219067932 219068274 -8456304 + MER46B DNA MER2_type 1 236 0 414 50 0 230 chr3 219068794 219068894 -8455684 + MADE1 DNA Mariner 2 78 -2 23 0 0 0 chr3 219068921 219068944 -8455634 + AT_rich Low_complexity Low_complexity 1 23 0 30 27 0 0 chr3 219069131 219069168 -8455410 + AT_rich Low_complexity Low_complexity 1 37 0 761 228 104 10 chr3 219069197 219069399 -8455179 + MER58A DNA MER1_type 1 221 -3 22 0 0 0 chr3 219069498 219069520 -8455058 + AT_rich Low_complexity Low_complexity 1 22 0 265 234 86 20 chr3 219069585 219069754 -8454824 - LTR50 LTR ERVL 0 795 593 280 250 67 83 chr3 219070049 219070229 -8454349 - LTR41 LTR ERVL -596 177 1 24 32 0 0 chr3 219070452 219070483 -8454095 + AT_rich Low_complexity Low_complexity 1 31 0 215 336 76 25 chr3 219071390 219071509 -8453069 + L2 LINE L2 3136 3260 -12 256 357 66 59 chr3 219072779 219073051 -8451527 + L2 LINE L2 2993 3266 -6 2514 36 7 13 chr3 219073877 219074186 -8450392 - AluY SINE Alu -4 307 1 4260 125 12 0 chr3 219075043 219075693 -8448885 - L1PA15 LINE L1 0 6165 5508 608 319 50 12 chr3 219077186 219077427 -8447151 + MIR SINE MIR 13 262 0 241 314 42 42 chr3 219078986 219079104 -8445474 - MIR3 SINE MIR -9 199 82 22 56 0 0 chr3 219079475 219079511 -8445067 + AT_rich Low_complexity Low_complexity 1 36 0 375 336 20 7 chr3 219079772 219079918 -8444660 + MIR SINE MIR 105 252 -10 267 103 0 0 chr3 219079918 219079957 -8444621 + (CA)n Simple_repeat Simple_repeat 2 40 0 2479 107 0 17 chr3 219079958 219080313 -8444265 - THE1C LTR MaLR -26 349 1 197 351 49 68 chr3 219080452 219080657 -8443921 + L3 LINE CR1 1330 1530 -47 2608 48 0 7 chr3 219080668 219080978 -8443600 + AluY SINE Alu 1 308 -3 5585 135 4 5 chr3 219081197 219082025 -8442553 + THE1C-int LTR MaLR 754 1580 0 2358 104 7 79 chr3 219082025 219082429 -8442149 + THE1C LTR MaLR 1 375 0 363 294 29 52 chr3 219082431 219082567 -8442011 - L3 LINE CR1 -512 1065 933 288 301 228 36 chr3 219083056 219083275 -8441303 + MIR SINE MIR 1 261 -1 246 244 203 24 chr3 219083487 219083610 -8440968 + L2 LINE L2 3160 3304 -9 573 186 80 102 chr3 219084785 219085059 -8439519 + L1ME1 LINE L1 101 368 -6055 418 291 63 12 chr3 219085152 219085406 -8439172 + L1ME1 LINE L1 1650 1916 -5025 371 312 53 24 chr3 219085434 219085604 -8438974 + L1ME1 LINE L1 2188 2362 -4579 890 271 61 32 chr3 219085768 219086770 -8437808 + L1ME1 LINE L1 2619 3717 -3224 1886 133 14 7 chr3 219086770 219087069 -8437509 + AluSx SINE Alu 1 301 0 890 271 61 32 chr3 219087069 219087161 -8437417 + L1ME1 LINE L1 3717 3805 -3136 1477 164 157 10 chr3 219087163 219087462 -8437116 - MSTA LTR MaLR 0 428 86 3844 70 168 46 chr3 219087462 219088075 -8436503 + LTR12 LTR ERV1 1 688 0 35323 83 26 8 chr3 219088075 219090561 -8434017 + HERV17 LTR ERV1 40 2480 -4458 2411 89 0 10 chr3 219090561 219090875 -8433703 - AluY SINE Alu 0 311 1 35323 83 26 8 chr3 219090875 219093219 -8431359 + HERV17 LTR ERV1 2480 4944 -1994 1818 97 40 35 chr3 219093220 219093790 -8430788 + HERV17 LTR ERV1 704 1403 -7223 3974 98 2 2 chr3 219093790 219094332 -8430246 + HERV17 LTR ERV1 7854 8395 -4 5191 79 3 34 chr3 219094336 219095046 -8429532 + LTR12 LTR ERV1 1 688 0 690 69 0 0 chr3 219095048 219095135 -8429443 - MSTA LTR MaLR -341 87 1 2773 242 73 74 chr3 219095135 219096631 -8427947 + L1ME1 LINE L1 3803 5298 -1643 1725 139 92 4 chr3 219096631 219096904 -8427674 + AluSx SINE Alu 1 297 -15 2773 242 73 74 chr3 219096904 219097118 -8427460 + L1ME1 LINE L1 5298 5511 -1430 * 2940 222 68 39 chr3 219097095 219097837 -8426741 + L1ME1 LINE L1 5831 6550 -579 1534 150 41 69 chr3 219097837 219098157 -8426421 + AluSx SINE Alu 1 311 -1 2940 222 68 39 chr3 219098157 219098207 -8426371 + L1ME1 LINE L1 6550 6597 -532 2391 96 0 3 chr3 219098207 219098519 -8426059 + AluSx SINE Alu 2 312 0 2940 222 68 39 chr3 219098519 219098833 -8425745 + L1ME1 LINE L1 6597 7129 0 328 159 16 16 chr3 219099254 219099317 -8425261 + LTR33 LTR ERVL 459 521 0 364 331 14 40 chr3 219100324 219100472 -8424106 + MIR3 SINE MIR 3 146 -62 266 186 34 17 chr3 219101136 219101195 -8423383 + GA-rich Low_complexity Low_complexity 2 61 0 238 361 67 25 chr3 219102938 219103057 -8421521 + MIR3 SINE MIR 8 131 -77 29 0 0 0 chr3 219103174 219103203 -8421375 + AT_rich Low_complexity Low_complexity 1 29 0 289 261 90 18 chr3 219103401 219103512 -8421066 + MIR3 SINE MIR 90 208 0 21 0 0 0 chr3 219103550 219103571 -8421007 + AT_rich Low_complexity Low_complexity 1 21 0 23 33 0 0 chr3 219103873 219103903 -8420675 + AT_rich Low_complexity Low_complexity 1 30 0 278 322 154 0 chr3 219103954 219104103 -8420475 - MIR SINE MIR 0 262 91 241 297 44 55 chr3 219104458 219104549 -8420029 + L2 LINE L2 3140 3229 -43 212 319 33 22 chr3 219105180 219105271 -8419307 + MIR SINE MIR 74 165 -97 356 250 135 10 chr3 219105305 219105409 -8419169 - L2 LINE L2 0 3272 3156 304 310 0 11 chr3 219105829 219105916 -8418662 + MIR SINE MIR 20 105 -103 2245 84 0 7 chr3 219105965 219106274 -8418304 - AluSq SINE Alu 0 307 1 24 67 0 0 chr3 219107012 219107057 -8417521 + AT_rich Low_complexity Low_complexity 1 45 0 186 43 0 0 chr3 219107528 219107551 -8417027 + (TA)n Simple_repeat Simple_repeat 2 24 0 30 0 0 0 chr3 219107750 219107780 -8416798 + AT_rich Low_complexity Low_complexity 1 30 0 2251 93 3 7 chr3 219107987 219108288 -8416290 + AluSq SINE Alu 1 300 -13 430 229 115 13 chr3 219108320 219108477 -8416101 + MER104 DNA Tc2 1 173 -7 289 292 154 8 chr3 219108706 219108836 -8415742 - MIR3 SINE MIR -23 185 37 259 194 15 30 chr3 219109769 219109836 -8414742 + MER103 DNA DNA 26 91 -75 2178 116 3 3 chr3 219110960 219111263 -8413315 + AluSq SINE Alu 1 303 -10 1616 128 115 17 chr3 219112044 219112375 -8412203 - MSTA LTR MaLR 0 428 51 296 324 93 28 chr3 219112591 219112773 -8411805 - MIR SINE MIR -61 201 8 319 286 100 49 chr3 219113451 219113958 -8410620 - L1ME LINE L1 -378 5792 5257 28 79 0 0 chr3 219114030 219114093 -8410485 + AT_rich Low_complexity Low_complexity 1 63 0 258 128 48 24 chr3 219114795 219114920 -8409658 + (TA)n Simple_repeat Simple_repeat 2 129 0 2570 77 0 0 chr3 219114943 219115253 -8409325 - AluSg SINE Alu 0 310 1 1542 122 46 0 chr3 219116307 219116544 -8408034 + AluSx SINE Alu 58 305 -7 1871 128 58 76 chr3 219116787 219116838 -8407740 - THE1C LTR MaLR 0 375 325 1741 149 14 7 chr3 219116838 219117114 -8407464 + AluSx SINE Alu 24 301 -11 1871 128 58 76 chr3 219117114 219117444 -8407134 - THE1C LTR MaLR -50 325 1 2108 102 7 3 chr3 219117444 219117749 -8406829 - THE1C-int LTR MaLR 0 1580 1275 586 264 65 50 chr3 219117925 219118175 -8406403 - Charlie4a DNA MER1_type -1453 508 248 2312 96 0 6 chr3 219118175 219118488 -8406090 + AluSx SINE Alu 1 311 -1 586 264 65 50 chr3 219118488 219118635 -8405943 - Charlie4a DNA MER1_type -1713 248 105 21 0 0 0 chr3 219118635 219118656 -8405922 + AT_rich Low_complexity Low_complexity 1 21 0 394 179 0 0 chr3 219118661 219118728 -8405850 - Alu SINE Alu -2 298 232 1993 113 0 45 chr3 219118729 219119039 -8405539 - AluSq SINE Alu -15 298 3 314 196 62 62 chr3 219119043 219119155 -8405423 - Charlie4a DNA MER1_type -396 112 1 1024 128 0 0 chr3 219119551 219119700 -8404878 - AluSx SINE Alu 0 310 162 515 151 0 0 chr3 219119700 219119773 -8404805 - AluSx SINE Alu -236 77 5 2071 126 7 0 chr3 219119838 219120132 -8404446 + AluSp SINE Alu 1 296 -17 525 314 111 62 chr3 219120327 219120541 -8404037 - LTR33 LTR ERVL -7 514 312 2232 110 0 0 chr3 219120541 219120840 -8403738 + AluSx SINE Alu 1 299 -13 525 314 111 62 chr3 219120840 219121113 -8403465 - LTR33 LTR ERVL -209 312 3 2402 85 42 45 chr3 219121702 219122080 -8402498 + MER51B LTR ERV1 1 377 0 918 203 57 106 chr3 219122473 219122962 -8401616 + MER4C LTR ERV1 1 465 0 1584 167 33 10 chr3 219123259 219123559 -8401019 + MER50 LTR ERV1 19 325 -409 1413 158 21 0 chr3 219123564 219123805 -8400773 + MER50 LTR ERV1 452 697 -37 318 188 205 18 chr3 219123951 219124063 -8400515 + LTR34 LTR ERV1 382 514 -185 2745 161 16 54 chr3 219124239 219124815 -8399763 + MER41C LTR ERV1 1 554 0 1846 230 77 31 chr3 219126319 219126836 -8397742 - MLT1F LTR MaLR -1 541 1 2337 67 6 16 chr3 219126984 219127297 -8397281 - AluY SINE Alu -1 310 1 251 237 134 10 chr3 219127556 219127653 -8396925 + L1ME3A LINE L1 2727 2835 -3311 637 298 57 21 chr3 219127656 219128079 -8396499 + L1ME3A LINE L1 3608 4045 -2101 447 230 99 25 chr3 219128131 219128292 -8396286 + L1ME3A LINE L1 4478 4650 -1496 534 252 8 0 chr3 219128379 219128506 -8396072 - FLAM_A SINE Alu -5 128 1 1532 261 68 13 chr3 219128506 219129339 -8395239 + L1ME3A LINE L1 4980 5885 -285 927 91 126 30 chr3 219129368 219129567 -8395011 - L1MA9 LINE L1 -5 6307 6090 243 75 0 25 chr3 219129611 219129651 -8394927 - L1MA9 LINE L1 -206 6106 6068 305 243 86 50 chr3 219129841 219129981 -8394597 + L1ME3A LINE L1 6026 6170 0 230 68 51 17 chr3 219130390 219130449 -8394129 + (TA)n Simple_repeat Simple_repeat 1 61 0 43 71 0 0 chr3 219130561 219130646 -8393932 + AT_rich Low_complexity Low_complexity 1 85 0 255 309 86 0 chr3 219131032 219131113 -8393465 + L2 LINE L2 3192 3279 -34 222 327 39 29 chr3 219131186 219131290 -8393288 - MIR SINE MIR -86 176 72 2469 81 0 3 chr3 219131597 219131906 -8392672 + AluSq SINE Alu 1 308 -5 374 206 31 9 chr3 219132031 219132124 -8392454 - MLT1D LTR MaLR -174 480 356 2231 119 3 0 chr3 219132137 219132447 -8392131 + AluSx SINE Alu 1 311 -1 612 217 0 0 chr3 219132450 219132593 -8391985 + GA-rich Low_complexity Low_complexity 2 144 0 821 217 76 62 chr3 219132593 219132897 -8391681 - MLT1D LTR MaLR -196 309 2 21 0 0 0 chr3 219133065 219133086 -8391492 + AT_rich Low_complexity Low_complexity 1 21 0 320 300 0 11 chr3 219133456 219133546 -8391032 + L2 LINE L2 3173 3261 -11 2080 108 0 0 chr3 219133669 219133947 -8390631 - AluSx SINE Alu -34 278 1 7889 127 11 41 chr3 219134096 219135399 -8389179 - THE1C-int LTR MaLR -317 1263 1 1815 169 32 27 chr3 219135399 219135772 -8388806 - THE1C LTR MaLR 0 375 1 207 184 0 0 chr3 219136637 219136675 -8387903 + T-rich Low_complexity Low_complexity 3 40 0 2105 127 0 3 chr3 219136751 219137042 -8387536 + AluSq SINE Alu 1 290 -23 320 285 152 19 chr3 219137812 219137970 -8386608 + MIR SINE MIR 34 212 -50 22 35 0 0 chr3 219138272 219138301 -8386277 + AT_rich Low_complexity Low_complexity 1 29 0 182 321 0 0 chr3 219138778 219138834 -8385744 - L2 LINE L2 -32 3240 3185 953 129 0 13 chr3 219138909 219139064 -8385514 + L1M1 LINE L1 5507 5659 -643 24 0 0 0 chr3 219139231 219139255 -8385323 + AT_rich Low_complexity Low_complexity 1 24 0 2438 133 3 8 chr3 219139326 219139694 -8384884 + THE1C LTR MaLR 1 366 -9 8952 122 108 3 chr3 219139694 219141116 -8383462 + THE1C-int LTR MaLR 9 1580 0 2270 113 39 14 chr3 219141118 219141412 -8383166 + THE1C LTR MaLR 3 309 -66 209 29 0 57 chr3 219141412 219141447 -8383131 + (TTAAA)n Simple_repeat Simple_repeat 3 35 0 2270 113 39 14 chr3 219141447 219141514 -8383064 + THE1C LTR MaLR 309 373 -2 235 299 11 11 chr3 219141655 219141742 -8382836 + HAL1b LINE L1 526 612 -736 203 152 0 43 chr3 219142106 219142152 -8382426 + A-rich Low_complexity Low_complexity 6 49 0 947 289 99 72 chr3 219142379 219142507 -8382071 + L1MC3 LINE L1 2401 2524 -3622 2124 122 7 0 chr3 219142507 219142810 -8381768 + AluSp SINE Alu 1 305 -8 947 289 99 72 chr3 219142810 219143937 -8380641 + L1MC3 LINE L1 2524 3690 -2456 2611 167 13 0 chr3 219143939 219144389 -8380189 + L1PA16 LINE L1 5695 6150 -16 23 92 0 0 chr3 219144389 219144454 -8380124 + AT_rich Low_complexity Low_complexity 1 65 0 677 295 7 8 chr3 219144492 219144810 -8379768 + L1MC3 LINE L1 3682 3998 -2148 929 320 112 33 chr3 219144861 219145982 -8378596 + L1MC3 LINE L1 4502 5263 -883 27 0 0 0 chr3 219145984 219146011 -8378567 + AT_rich Low_complexity Low_complexity 1 27 0 369 262 8 24 chr3 219146092 219146218 -8378360 - L1MC5 LINE L1 -1208 6753 6630 587 199 19 77 chr3 219146523 219146679 -8377899 - L1MC5 LINE L1 -1051 6910 6764 337 231 128 26 chr3 219147055 219147211 -8377367 + L1MC5 LINE L1 6978 7149 -812 1444 196 94 73 chr3 219147220 219147795 -8376783 + L1MC5 LINE L1 7094 7680 -281 341 257 81 7 chr3 219147851 219147987 -8376591 + L1MC5 LINE L1 7772 7917 -44 1958 123 0 7 chr3 219148194 219148515 -8376063 + AluSx SINE Alu 1 319 0 2233 102 3 3 chr3 219148695 219148999 -8375579 + AluSc SINE Alu 1 304 -5 36 0 0 0 chr3 219149860 219149896 -8374682 + AT_rich Low_complexity Low_complexity 1 36 0 753 234 0 0 chr3 219150681 219150826 -8373752 - FRAM SINE Alu -31 145 1 364 240 52 21 chr3 219151745 219151841 -8372737 + MIR SINE MIR 19 117 -145 1753 142 0 0 chr3 219152454 219152735 -8371843 + L1PA13 LINE L1 5883 6163 0 24 32 0 0 chr3 219152818 219152849 -8371729 + AT_rich Low_complexity Low_complexity 1 31 0 226 345 7 21 chr3 219153024 219153166 -8371412 + CT-rich Low_complexity Low_complexity 1 140 0 2143 197 35 44 chr3 219153757 219153865 -8370713 + L1MC3 LINE L1 5723 5830 -1955 180 0 0 0 chr3 219153865 219153885 -8370693 + (TC)n Simple_repeat Simple_repeat 1 20 0 * 273 29 0 0 chr3 219153884 219153918 -8370660 + (CA)n Simple_repeat Simple_repeat 1 34 0 2143 197 35 44 chr3 219153885 219154463 -8370115 + L1MC3 LINE L1 5830 6593 -1192 27 0 0 0 chr3 219154748 219154775 -8369803 + AT_rich Low_complexity Low_complexity 1 27 0 1810 129 26 7 chr3 219155025 219155296 -8369282 - AluSx SINE Alu -14 298 23 1948 129 0 19 chr3 219155511 219155829 -8368749 - AluYb8 SINE Alu -6 312 1 1387 138 12 16 chr3 219156752 219156998 -8367580 - LTR1 LTR ERV1 -540 245 1 948 178 9 19 chr3 219156999 219157212 -8367366 - L1 LINE L1 -2396 3750 3540 282 301 54 0 chr3 219159344 219159437 -8365141 - MIR SINE MIR -84 178 81 35 0 0 0 chr3 219160119 219160154 -8364424 + AT_rich Low_complexity Low_complexity 1 35 0 695 167 9 0 chr3 219160154 219160300 -8364278 + FLAM_C SINE Alu 2 148 0 211 398 29 0 chr3 219160302 219160405 -8364173 - L2 LINE L2 -789 2525 2420 297 324 108 11 chr3 219161823 219162001 -8362577 - MIR SINE MIR -2 260 65 628 333 83 0 chr3 219162001 219162241 -8362337 + MIR SINE MIR 1 260 -2 1364 210 4 12 chr3 219164764 219165021 -8359557 + AluJo SINE Alu 1 255 -57 244 167 0 0 chr3 219165087 219165129 -8359449 + L1ME3A LINE L1 6035 6076 -94 416 192 296 8 chr3 219165881 219166006 -8358572 + MIR SINE MIR 81 241 -21 236 357 51 0 chr3 219166900 219166998 -8357580 - MIR SINE MIR -19 243 141 516 286 115 30 chr3 219167018 219167252 -8357326 + MIR SINE MIR 9 262 0 201 331 86 22 chr3 219167234 219167373 -8357205 - MIR SINE MIR -101 161 14 * 2145 105 0 23 chr3 219168160 219168464 -8356114 - AluSc SINE Alu -12 297 1 239 371 64 29 chr3 219169038 219169178 -8355400 - MIR3 SINE MIR -46 162 18 2226 170 118 27 chr3 219169475 219169994 -8354584 - LTR49 LTR ERV1 -29 566 1 4309 151 69 64 chr3 219169995 219171100 -8353478 - LTR49-int LTR ERV1 -1 6330 5221 2194 144 0 24 chr3 219171100 219171441 -8353137 - MER1B DNA MER1_type 0 339 7 12720 170 91 67 chr3 219171448 219172999 -8351579 - LTR49-int LTR ERV1 -1109 5222 3709 1772 181 0 13 chr3 219172999 219173309 -8351269 + AluJb SINE Alu 1 306 -6 12720 170 91 67 chr3 219173309 219174526 -8350052 - LTR49-int LTR ERV1 -2622 3709 2361 1771 90 0 0 chr3 219174526 219174771 -8349807 + L1PA8 LINE L1 5928 6172 0 12720 170 91 67 chr3 219174771 219175297 -8349281 - LTR49-int LTR ERV1 -3970 2361 1849 1816 134 7 34 chr3 219175300 219175598 -8348980 - AluSg SINE Alu -18 292 3 477 156 94 10 chr3 219175598 219175694 -8348884 - LTR49-int LTR ERV1 -4795 1536 1433 273 319 0 0 chr3 219175747 219175819 -8348759 - tRNA-Glu-GAG tRNA tRNA -1 74 3 5247 159 91 40 chr3 219175845 219175949 -8348629 - LTR49-int LTR ERV1 -5161 1170 1073 2197 104 13 0 chr3 219175949 219176248 -8348330 - AluSc SINE Alu -6 303 1 5247 159 91 40 chr3 219176248 219177256 -8347322 - LTR49-int LTR ERV1 -5258 1073 1 2200 122 195 30 chr3 219177259 219177767 -8346811 - LTR49 LTR ERV1 -3 592 1 2136 97 30 10 chr3 219178033 219178331 -8346247 + AluSx SINE Alu 1 304 -8 21 0 0 0 chr3 219178710 219178731 -8345847 + AT_rich Low_complexity Low_complexity 1 21 0 27 0 0 0 chr3 219179157 219179184 -8345394 + AT_rich Low_complexity Low_complexity 1 27 0 22 0 0 0 chr3 219179215 219179237 -8345341 + AT_rich Low_complexity Low_complexity 1 22 0 1705 154 23 33 chr3 219181937 219182243 -8342335 - AluJb SINE Alu -9 303 1 2219 88 26 7 chr3 219182250 219182555 -8342023 - AluSp SINE Alu 0 313 3 7434 41 15 0 chr3 219183564 219184448 -8340130 - MER11D LTR ERVK 0 897 1 827 189 81 5 chr3 219184655 219184840 -8339738 - MER3 DNA MER1_type -10 199 1 872 184 86 12 chr3 219185604 219185767 -8338811 - FAM SINE Alu 0 175 1 1445 199 0 4 chr3 219186326 219186587 -8337991 - AluJo SINE Alu -43 269 10 1188 299 81 62 chr3 219186597 219186873 -8337705 + L2 LINE L2 1668 1937 -1377 2125 152 84 39 chr3 219186873 219187022 -8337556 + LOR1b LTR ERV1 1 142 -319 2233 99 10 3 chr3 219187022 219187325 -8337253 + AluSc SINE Alu 1 305 -4 2125 152 84 39 chr3 219187325 219187616 -8336962 + LOR1b LTR ERV1 142 461 0 1188 299 81 62 chr3 219187616 219188005 -8336573 + L2 LINE L2 1937 2346 -968 262 111 0 22 chr3 219188320 219188365 -8336213 + MLT1-int LTR MaLR 4 47 -1324 2113 93 10 17 chr3 219188676 219188978 -8335600 + AluSq SINE Alu 1 300 -13 2148 99 0 10 chr3 219188980 219189273 -8335305 + AluSx SINE Alu 1 290 -22 303 259 35 42 chr3 219189470 219189613 -8334965 + MLT1J2 LTR MaLR 68 209 -241 501 320 32 24 chr3 219189816 219189999 -8334579 + L2 LINE L2 2366 2553 -761 1516 109 29 0 chr3 219189999 219190209 -8334369 + AluSg/x SINE Alu 82 297 -15 501 320 32 24 chr3 219190209 219190275 -8334303 + L2 LINE L2 2553 2617 -697 298 346 29 15 chr3 219190272 219190408 -8334170 + MIR SINE MIR 61 198 -64 * 809 274 88 0 chr3 219190442 219190657 -8333921 - MIR SINE MIR -21 241 8 2262 110 0 0 chr3 219191498 219191807 -8332771 + AluY SINE Alu 3 311 0 341 234 9 0 chr3 219191832 219191943 -8332635 + GA-rich Low_complexity Low_complexity 1 112 0 25 0 0 0 chr3 219192227 219192252 -8332326 + AT_rich Low_complexity Low_complexity 1 25 0 425 288 51 8 chr3 219192569 219192687 -8331891 - MIR3 SINE MIR -47 161 39 23 0 0 0 chr3 219192811 219192834 -8331744 + AT_rich Low_complexity Low_complexity 1 23 0 21 36 0 0 chr3 219194116 219194144 -8330434 + AT_rich Low_complexity Low_complexity 1 28 0 275 220 119 34 chr3 219194472 219194590 -8329988 + HAL1b LINE L1 1194 1321 -27 192 282 29 68 chr3 219197355 219197458 -8327120 - MIR3 SINE MIR -15 193 95 32 26 0 0 chr3 219197529 219197568 -8327010 + AT_rich Low_complexity Low_complexity 1 39 0 180 426 0 0 chr3 219199617 219199671 -8324907 + L2 LINE L2 3122 3175 -97 21 36 0 0 chr3 219199984 219200012 -8324566 + AT_rich Low_complexity Low_complexity 1 28 0 27 62 0 0 chr3 219200257 219200305 -8324273 + AT_rich Low_complexity Low_complexity 1 48 0 2059 143 0 7 chr3 219200411 219200719 -8323859 - AluSg SINE Alu -4 306 1 510 141 0 0 chr3 219200737 219200815 -8323763 + AluS SINE Alu 1 78 -232 11445 210 40 26 chr3 219200943 219201719 -8322859 + L1M1 LINE L1 2895 3659 -3906 2169 123 3 0 chr3 219201719 219202019 -8322559 + AluSc SINE Alu 2 302 -7 11445 210 40 26 chr3 219202019 219204773 -8319805 + L1M1 LINE L1 3659 6467 -1098 295 194 0 14 chr3 219204777 219204849 -8319729 - L1 LINE L1 -1507 4639 4569 926 196 54 5 chr3 219204857 219205061 -8319517 + L1MA8 LINE L1 4960 5173 -973 352 212 50 0 chr3 219205064 219205163 -8319415 + L1MA8 LINE L1 5254 5357 -934 * 2884 184 30 35 chr3 219205143 219205226 -8319352 + L1MA8 LINE L1 5579 5661 -630 1506 160 22 0 chr3 219205226 219205550 -8319028 + AluY SINE Alu 1 330 0 2884 184 30 35 chr3 219205550 219206159 -8318419 + L1MA8 LINE L1 5661 6269 -22 354 268 0 0 chr3 219206451 219206533 -8318045 - MIR SINE MIR -12 250 169 4765 221 39 75 chr3 219207212 219207550 -8317028 - L1 LINE L1 -796 5350 5001 2229 102 0 0 chr3 219207550 219207844 -8316734 - AluY SINE Alu -17 294 1 4765 221 39 75 chr3 219207844 219209018 -8315560 - L1 LINE L1 -1145 5001 3882 496 179 11 0 chr3 219209018 219209113 -8315465 + AluSg/x SINE Alu 205 300 -12 4765 221 39 75 chr3 219209113 219209675 -8314903 - L1 LINE L1 -2264 3882 3301 2071 86 3 38 chr3 219209908 219210240 -8314338 + AluSp SINE Alu 1 322 0 1229 321 115 48 chr3 219210762 219210841 -8313737 + L2 LINE L2 1609 1681 -1632 1856 152 0 7 chr3 219210841 219211147 -8313431 + AluSx SINE Alu 3 306 0 1229 321 115 48 chr3 219211147 219212347 -8312231 + L2 LINE L2 1681 3021 -292 282 95 0 0 chr3 219212347 219212389 -8312189 + (CA)n Simple_repeat Simple_repeat 2 43 0 1229 321 115 48 chr3 219212389 219212703 -8311875 + L2 LINE L2 3021 3313 0 183 390 26 52 chr3 219213474 219213628 -8310950 + L2 LINE L2 2934 3083 -189 2125 138 114 5 chr3 219214354 219214739 -8309839 + MSTA LTR MaLR 2 428 0 8899 156 25 40 chr3 219214739 219216146 -8308432 + MSTA-int LTR MaLR 1 1381 -270 2082 107 3 3 chr3 219216146 219216436 -8308142 - AluSg SINE Alu -20 290 1 8899 156 25 40 chr3 219216436 219216704 -8307874 + MSTA-int LTR MaLR 1381 1651 0 1784 175 154 5 chr3 219216704 219217075 -8307503 + MSTA LTR MaLR 1 426 -2 2551 46 0 10 chr3 219217572 219217877 -8306701 - AluY SINE Alu -9 302 1 3495 169 11 12 chr3 219218020 219218673 -8305905 + MER41B LTR ERV1 1 476 -2 966 183 139 40 chr3 219218837 219219111 -8305467 + LTR48 LTR ERV1 1 301 -486 586 238 81 76 chr3 219219105 219219456 -8305122 + LTR48 LTR ERV1 228 787 0 * 2057 108 42 0 chr3 219220058 219220346 -8304232 - AluSx SINE Alu -12 300 1 777 274 77 11 chr3 219220372 219220646 -8303932 + LTR16C LTR ERVL 186 477 -14 6349 77 17 14 chr3 219220766 219222337 -8302241 - L1PA12 LINE L1 -15 6153 4572 208 0 0 0 chr3 219222720 219222743 -8301835 + (TTTTG)n Simple_repeat Simple_repeat 3 180 0 1971 123 18 0 chr3 219222743 219223020 -8301558 - AluSx SINE Alu -1 304 1 2126 134 0 0 chr3 219223887 219224215 -8300363 - AluSg SINE Alu 0 335 8 579 303 41 27 chr3 219224369 219224598 -8299980 - HERVL LTR ERVL -2514 3140 2914 904 229 33 9 chr3 219224598 219224812 -8299766 - MER20 DNA MER1_type 0 219 1 579 303 41 27 chr3 219224812 219225008 -8299570 - HERVL LTR ERVL -2740 2914 2722 345 184 14 129 chr3 219225181 219225245 -8299333 + LTR40a LTR ERVL 4 43 -476 2226 79 6 38 chr3 219225245 219225561 -8299017 - AluY SINE Alu -5 306 1 345 184 14 129 chr3 219225561 219225634 -8298944 + LTR40a LTR ERVL 43 124 -395 2144 147 30 15 chr3 219225634 219226029 -8298549 + MSTA LTR MaLR 1 401 -27 2101 137 0 9 chr3 219226039 219226354 -8298224 - AluSx SINE Alu 0 312 1 1465 244 25 27 chr3 219226398 219226800 -8297778 + LTR40a LTR ERVL 119 519 0 789 331 60 30 chr3 219226800 219227296 -8297282 - HERVL LTR ERVL -3255 2509 1999 2127 116 3 42 chr3 219227946 219228257 -8296321 + AluSx SINE Alu 1 299 -13 258 200 83 91 chr3 219229060 219229106 -8295472 - L1ME LINE L1 -541 5623 5578 1978 105 72 0 chr3 219229106 219229383 -8295195 - AluSx SINE Alu -15 297 1 258 200 83 91 chr3 219229383 219229447 -8295131 - L1ME LINE L1 -586 5578 5509 2591 194 8 17 chr3 219229449 219229809 -8294769 + MER41D LTR ERV1 43 398 -159 2232 129 0 0 chr3 219229809 219230119 -8294459 - AluSx SINE Alu -2 310 1 2591 194 8 17 chr3 219230119 219230278 -8294300 + MER41D LTR ERV1 398 557 0 392 367 75 42 chr3 219230375 219230581 -8293997 - L1MEc LINE L1 -6014 382 157 3952 172 52 50 chr3 219230581 219231102 -8293476 + MER21B LTR ERV1 1 526 -337 2327 94 3 3 chr3 219231102 219231401 -8293177 - AluSq SINE Alu -14 299 1 3952 172 52 50 chr3 219231401 219231739 -8292839 + MER21B LTR ERV1 526 862 -1 392 367 75 42 chr3 219231739 219231892 -8292686 - L1MEc LINE L1 -6239 157 11 232 311 47 34 chr3 219232011 219232159 -8292419 - MLT1G1 LTR MaLR -7 588 439 3353 164 122 23 chr3 219232313 219233644 -8290934 - pTR5 LTR ERV1 -156 1798 31 270 0 0 0 chr3 219233656 219233686 -8290892 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1896 133 0 4 chr3 219233690 219233968 -8290610 - AluSx SINE Alu -35 277 1 24 0 0 0 chr3 219233971 219233995 -8290583 + AT_rich Low_complexity Low_complexity 1 24 0 603 276 35 22 chr3 219234015 219234243 -8290335 - MLT1G1 LTR MaLR -364 231 1 1916 170 0 6 chr3 219234548 219234859 -8289719 - AluSx SINE Alu -3 309 1 207 0 0 0 chr3 219234899 219234922 -8289656 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 2025 122 0 33 chr3 219235666 219235970 -8288608 + AluSg SINE Alu 1 294 -16 1306 291 110 12 chr3 219236075 219236900 -8287678 - L2 LINE L2 -4 3309 2406 404 212 111 7 chr3 219236982 219237120 -8287458 + MSTC LTR MaLR 1 156 -209 217 248 0 26 chr3 219237774 219237833 -8286745 + (TATATG)n Simple_repeat Simple_repeat 2 58 -53 2216 104 0 0 chr3 219237833 219238121 -8286457 + AluSq SINE Alu 1 288 -25 217 248 0 26 chr3 219238121 219238174 -8286404 + (TATATG)n Simple_repeat Simple_repeat 58 111 0 1537 298 83 106 chr3 219238433 219239220 -8285358 - L2 LINE L2 -1294 2020 1216 1629 140 32 95 chr3 219239220 219239557 -8285021 - AluSx SINE Alu 0 317 1 1537 298 83 106 chr3 219239557 219240047 -8284531 - L2 LINE L2 -2098 1216 716 2134 154 70 7 chr3 219240047 219240450 -8284128 + MSTC LTR MaLR 1 428 0 1537 298 83 106 chr3 219240450 219240462 -8284116 - L2 LINE L2 -2598 716 705 2541 100 22 8 chr3 219240462 219240821 -8283757 + THE1B LTR MaLR 1 364 0 1537 298 83 106 chr3 219240821 219240855 -8283723 - L2 LINE L2 -2609 705 672 2077 136 0 3 chr3 219240855 219241150 -8283428 + AluSx SINE Alu 1 294 -18 1537 298 83 106 chr3 219241150 219241670 -8282908 - L2 LINE L2 -2642 672 215 843 181 76 27 chr3 219241767 219242050 -8282528 + MLT1B LTR MaLR 4 390 0 654 183 33 0 chr3 219242307 219242427 -8282151 - L2 LINE L2 0 3313 3190 788 301 133 15 chr3 219243186 219243302 -8281276 - LTR33 LTR ERVL 0 521 420 1742 106 0 4 chr3 219243302 219243538 -8281040 + AluSx SINE Alu 1 235 -77 788 301 133 15 chr3 219243538 219243879 -8280699 - LTR33 LTR ERVL -101 420 10 323 176 162 0 chr3 219244031 219244105 -8280473 - MER58 DNA MER1_type -2 2418 2333 297 0 0 0 chr3 219246384 219246417 -8278161 + (CA)n Simple_repeat Simple_repeat 2 34 0 219 69 0 0 chr3 219249770 219249799 -8274779 + (TGAA)n Simple_repeat Simple_repeat 1 29 0 21 36 0 0 chr3 219250462 219250490 -8274088 + AT_rich Low_complexity Low_complexity 1 28 0 320 253 27 89 chr3 219250551 219250697 -8273881 - MIR3 SINE MIR -18 190 54 243 274 27 14 chr3 219250739 219250812 -8273766 + CT-rich Low_complexity Low_complexity 3 76 0 893 165 140 13 chr3 219251884 219252120 -8272458 - L1ME1 LINE L1 -16 6150 5885 1532 205 68 70 chr3 219252132 219252674 -8271904 - L1ME1 LINE L1 -396 5770 5230 207 330 132 0 chr3 219252693 219252799 -8271779 + MER5B DNA MER1_type 12 131 -47 983 205 60 7 chr3 219252990 219253261 -8271317 + MER58 DNA MER1_type 40 2405 -15 1591 116 0 0 chr3 219253514 219253730 -8270848 - AluSg SINE Alu -94 216 1 299 313 53 38 chr3 219256205 219256336 -8268242 - MIR3 SINE MIR -25 183 51 1451 169 63 0 chr3 219256926 219257180 -8267398 - AluJo SINE Alu -15 297 28 559 250 113 54 chr3 219257348 219257552 -8267026 - MIR SINE MIR 0 262 47 1278 178 12 21 chr3 219259062 219259303 -8265275 - MER8 DNA MER2_type 0 239 1 205 353 88 0 chr3 219259315 219259417 -8265161 - MIR SINE MIR -107 155 45 664 221 53 16 chr3 219260373 219260563 -8264015 + MER3 DNA MER1_type 1 197 -12 207 0 0 0 chr3 219260659 219260682 -8263896 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 1941 128 3 3 chr3 219260684 219260966 -8263612 - AluSx SINE Alu -30 282 1 234 349 81 17 chr3 219262733 219262905 -8261673 + L3 LINE CR1 1299 1481 -96 250 283 76 22 chr3 219263608 219263700 -8260878 + MIR SINE MIR 49 145 -63 202 365 79 16 chr3 219263995 219264121 -8260457 - L2 LINE L2 0 3272 3139 872 204 0 21 chr3 219265637 219265823 -8258755 + L1PB4 LINE L1 5974 6155 -1 381 328 11 28 chr3 219266098 219266275 -8258303 + MIR SINE MIR 32 205 -57 463 171 0 0 chr3 219268535 219268617 -8255961 + Tigger1 DNA MER2_type 1 82 -2336 * 1068 138 4 86 chr3 219268616 219268848 -8255730 + Tigger1 DNA MER2_type 2205 2417 -1 25 0 0 0 chr3 219270430 219270455 -8254123 + AT_rich Low_complexity Low_complexity 1 25 0 744 213 29 36 chr3 219270827 219271138 -8253440 + MER2 DNA MER2_type 6 345 0 228 271 112 9 chr3 219271140 219271247 -8253331 + MER112 DNA MER1_type 138 255 -5 300 324 33 45 chr3 219271582 219271744 -8252834 + MIR3 SINE MIR 20 177 -31 500 324 0 34 chr3 219273788 219273992 -8250586 + MIR SINE MIR 12 208 -54 376 266 33 52 chr3 219274390 219274577 -8250001 + MIR SINE MIR 24 201 -24 450 300 107 65 chr3 219275277 219275746 -8248832 - L2 LINE L2 -222 3050 2556 387 316 134 16 chr3 219276911 219277098 -8247480 + MIR SINE MIR 54 262 0 1838 185 98 16 chr3 219277471 219277899 -8246679 - MLT1C LTR MaLR -4 463 1 1468 176 40 34 chr3 219278216 219278512 -8246066 - AluJb SINE Alu -14 298 1 268 343 69 0 chr3 219279305 219279407 -8245171 - MIR SINE MIR -62 146 38 430 263 113 36 chr3 219279447 219279641 -8244937 + MIR SINE MIR 28 236 -26 2030 128 3 3 chr3 219280156 219280454 -8244124 - AluSc SINE Alu -11 298 1 22 0 0 0 chr3 219280675 219280697 -8243881 + AT_rich Low_complexity Low_complexity 1 22 0 202 337 11 0 chr3 219280900 219280989 -8243589 + CT-rich Low_complexity Low_complexity 2 91 0 879 122 58 7 chr3 219281953 219282092 -8242486 - MER46A DNA MER2_type -90 146 1 486 177 120 63 chr3 219281955 219282113 -8242465 + MER46A DNA MER2_type 1 167 -69 * 245 322 26 66 chr3 219284997 219285149 -8239429 + L2 LINE L2 2712 2857 -457 189 0 0 0 chr3 219286292 219286313 -8238265 + (TTTTG)n Simple_repeat Simple_repeat 2 22 0 2050 36 8 0 chr3 219286313 219286563 -8238015 - L1PA4 LINE L1 -12 6143 5892 2216 126 0 0 chr3 219286566 219286876 -8237702 - AluSx SINE Alu -2 310 1 227 31 31 0 chr3 219287337 219287369 -8237209 + (ATGGTG)n Simple_repeat Simple_repeat 3 35 0 24 32 0 0 chr3 219288274 219288305 -8236273 + AT_rich Low_complexity Low_complexity 1 31 0 215 167 56 0 chr3 219289150 219289204 -8235374 + (TATATG)n Simple_repeat Simple_repeat 1 57 0 236 264 28 56 chr3 219292111 219292172 -8232406 + MIR3 SINE MIR 111 169 -39 252 301 127 40 chr3 219292172 219292345 -8232233 + MER5A DNA MER1_type 2 189 0 246 167 0 21 chr3 219293262 219293310 -8231268 + Charlie8 DNA MER1_type 1382 1428 -989 407 224 82 35 chr3 219293421 219293591 -8230987 - LTR37B LTR ERV1 -87 381 204 228 35 0 0 chr3 219294817 219294846 -8229732 + (TTTG)n Simple_repeat Simple_repeat 2 30 0 435 260 28 55 chr3 219295221 219295402 -8229176 + MER5B DNA MER1_type 3 178 0 4909 169 48 10 chr3 219300767 219302301 -8222277 - L1PA16 LINE L1 -14 6152 4554 2193 109 0 0 chr3 219302301 219302594 -8221984 - AluSx SINE Alu -19 293 1 4909 169 48 10 chr3 219302594 219302673 -8221905 - L1PA16 LINE L1 -1612 4554 4480 833 234 14 0 chr3 219302674 219302892 -8221686 + L1PA16 LINE L1 4265 4485 -1661 403 265 212 26 chr3 219303117 219303381 -8221197 - L2 LINE L2 0 3313 3001 198 171 0 0 chr3 219304289 219304330 -8220248 + (CATATA)n Simple_repeat Simple_repeat 2 42 0 548 316 60 14 chr3 219304375 219304593 -8219985 + MIR SINE MIR 5 232 -30 22 56 0 0 chr3 219304976 219305012 -8219566 + AT_rich Low_complexity Low_complexity 1 36 0 184 235 12 12 chr3 219305125 219305210 -8219368 + T-rich Low_complexity Low_complexity 3 87 0 1753 162 48 7 chr3 219305919 219306209 -8218369 - AluJb SINE Alu -10 302 1 3844 106 45 15 chr3 219306426 219307042 -8217536 - MER41B LTR ERV1 0 635 1 227 230 54 108 chr3 219307136 219307284 -8217294 + MIR SINE MIR 120 259 -3 338 258 15 65 chr3 219307379 219307511 -8217067 + MER5B DNA MER1_type 47 183 -6 216 0 0 0 chr3 219308867 219308891 -8215687 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2021 131 0 0 chr3 219308893 219309175 -8215403 - AluSx SINE Alu -30 282 1 21 36 0 0 chr3 219310058 219310086 -8214492 + AT_rich Low_complexity Low_complexity 1 28 0 27 62 0 0 chr3 219310333 219310381 -8214197 + AT_rich Low_complexity Low_complexity 1 48 0 180 0 0 0 chr3 219310610 219310630 -8213948 + (TTG)n Simple_repeat Simple_repeat 2 21 0 22 0 0 0 chr3 219314639 219314661 -8209917 + AT_rich Low_complexity Low_complexity 1 22 0 217 247 68 55 chr3 219315165 219315238 -8209340 + MIR3 SINE MIR 111 184 -24 2534 62 0 3 chr3 219315523 219315830 -8208748 - AluY SINE Alu -5 306 1 220 337 22 11 chr3 219316077 219316169 -8208409 + MIR SINE MIR 44 136 -72 495 256 47 0 chr3 219317054 219317183 -8207395 - L1MDa LINE L1 -3362 3178 3044 252 192 39 0 chr3 219317191 219317243 -8207335 - Tigger5 DNA MER2_type -6 2317 2264 * 331 164 33 0 chr3 219317239 219317300 -8207278 + Tigger5 DNA MER2_type 2242 2304 -19 560 231 77 11 chr3 219317375 219317557 -8207021 - L1MDa LINE L1 -3498 3042 2849 1792 200 55 74 chr3 219317587 219318152 -8206426 - MLT2B3 LTR ERVL 0 554 1 2018 153 0 28 chr3 219318201 219318528 -8206050 + MER1B DNA MER1_type 22 339 0 795 185 123 15 chr3 219318553 219318748 -8205830 - L1MDa LINE L1 -6310 230 15 2655 196 101 6 chr3 219319139 219319811 -8204767 - L1MB4 LINE L1 0 6678 5943 * 3188 232 25 20 chr3 219319800 219320590 -8203988 - L1MB4 LINE L1 -1174 5470 4685 1955 198 72 12 chr3 219320590 219320990 -8203588 - MSTB LTR MaLR 0 426 3 8497 190 20 4 chr3 219320992 219322617 -8201961 - MSTB-int LTR MaLR 0 1651 1 2152 172 71 2 chr3 219322620 219323015 -8201563 - MSTB LTR MaLR -4 422 1 3188 232 25 20 chr3 219323015 219323097 -8201481 - L1MB4 LINE L1 -1960 4684 4587 4130 228 95 21 chr3 219323100 219323246 -8201332 - L1MB4 LINE L1 -2490 4154 4020 2245 97 0 10 chr3 219323246 219323544 -8201034 - AluY SINE Alu -12 299 5 4130 228 95 21 chr3 219323544 219324078 -8200500 - L1MB4 LINE L1 -2624 4020 3527 312 27 0 0 chr3 219324078 219324115 -8200463 + (TG)n Simple_repeat Simple_repeat 2 38 0 4130 228 95 21 chr3 219324115 219325171 -8199407 - L1MB4 LINE L1 -3117 3527 2551 1596 63 0 0 chr3 219325171 219325376 -8199202 + L1PA5 LINE L1 5947 6151 -3 4130 228 95 21 chr3 219325376 219325487 -8199091 - L1MB4 LINE L1 -4093 2551 2450 2026 153 50 0 chr3 219325487 219325808 -8198770 + MER1B DNA MER1_type 1 337 0 4130 228 95 21 chr3 219325808 219326332 -8198246 - L1MB4 LINE L1 -4194 2450 1597 1767 269 107 59 chr3 219326313 219327406 -8197172 - L1MB4 LINE L1 -5336 1206 61 * 300 226 129 0 chr3 219327559 219327652 -8196926 + L1MC4a LINE L1 5793 5897 -1911 392 133 0 13 chr3 219327994 219328069 -8196509 + (TC)n Simple_repeat Simple_repeat 1 74 0 23 68 0 0 chr3 219328243 219328287 -8196291 + AT_rich Low_complexity Low_complexity 1 44 0 194 182 23 0 chr3 219328303 219328347 -8196231 - MER5A DNA MER1_type -80 109 65 810 102 15 22 chr3 219328369 219328506 -8196072 - L1PB2 LINE L1 -7 6144 6009 1061 73 0 0 chr3 219328515 219328652 -8195926 - L1PA10 LINE L1 -8 6160 6024 2587 173 17 19 chr3 219328836 219329309 -8195269 - MER70A LTR ERVL 0 472 1 358 227 93 53 chr3 219329414 219329620 -8194958 + L1M4 LINE L1 2148 2367 -3779 2036 140 0 16 chr3 219329620 219329756 -8194822 + AluSq SINE Alu 1 138 -175 2300 82 14 0 chr3 219329756 219330049 -8194529 + AluY SINE Alu 2 298 -13 2036 140 0 16 chr3 219330049 219330227 -8194351 + AluSq SINE Alu 138 310 -3 358 227 93 53 chr3 219330227 219330267 -8194311 + L1M4 LINE L1 2367 2404 -3742 181 279 66 16 chr3 219330596 219330657 -8193921 + L3 LINE CR1 1512 1575 -2 2372 142 25 48 chr3 219331194 219331276 -8193302 - MSTA LTR MaLR 0 428 346 2062 112 21 3 chr3 219331276 219331563 -8193015 + AluSx SINE Alu 9 300 -12 2372 142 25 48 chr3 219331563 219331918 -8192660 - MSTA LTR MaLR -82 346 1 2165 94 3 7 chr3 219332130 219332428 -8192150 + AluSx SINE Alu 1 297 -15 763 200 149 14 chr3 219332584 219332859 -8191719 - MER33 DNA MER1_type -11 313 2 1730 106 78 0 chr3 219332934 219333088 -8191490 - AluSq SINE Alu -12 301 118 309 51 0 0 chr3 219333088 219333127 -8191451 + (TG)n Simple_repeat Simple_repeat 2 40 0 1730 106 78 0 chr3 219333127 219333227 -8191351 - AluSq SINE Alu -195 118 27 1200 148 0 0 chr3 219333601 219333784 -8190794 + AluJb SINE Alu 128 310 -2 13698 136 61 3 chr3 219333975 219336233 -8188345 + Tigger1 DNA MER2_type 31 2418 0 224 296 44 121 chr3 219336234 219336754 -8187824 - L2 LINE L2 -1774 1540 1061 409 234 106 21 chr3 219337271 219337412 -8187166 + MIR SINE MIR 14 166 -96 344 340 119 55 chr3 219337718 219338138 -8186440 - L3 LINE CR1 -123 1454 1008 5881 105 22 2 chr3 219338927 219340197 -8184381 + L1PA13 LINE L1 4873 6163 0 247 250 0 0 chr3 219340487 219340543 -8184035 + MIR SINE MIR 82 137 -71 206 222 0 0 chr3 219341404 219341440 -8183138 + polypyrimidine Low_complexity Low_complexity 2 37 0 2246 128 43 8 chr3 219341476 219341828 -8182750 + THE1B LTR MaLR 1 364 0 330 279 39 31 chr3 219342434 219342563 -8182015 - MIR3 SINE MIR -77 131 2 377 260 30 0 chr3 219342630 219342730 -8181848 + MER5A DNA MER1_type 10 112 -77 543 220 39 94 chr3 219343599 219343854 -8180724 + L1MC4 LINE L1 7641 7881 -161 207 225 0 0 chr3 219343865 219343905 -8180673 + (TA)n Simple_repeat Simple_repeat 1 40 0 337 212 136 0 chr3 219343948 219344066 -8180512 + L1MC4 LINE L1 7909 8042 0 314 247 75 48 chr3 219344215 219344401 -8180177 + L1ME4a LINE L1 5931 6121 0 200 277 0 0 chr3 219345162 219345209 -8179369 + (CA)n Simple_repeat Simple_repeat 2 48 0 318 302 34 62 chr3 219345339 219345518 -8179060 - L1ME LINE L1 -366 5755 5582 21 71 0 0 chr3 219345697 219345739 -8178839 + AT_rich Low_complexity Low_complexity 1 42 0 192 214 0 0 chr3 219345947 219346003 -8178575 + A-rich Low_complexity Low_complexity 1 56 0 1711 204 20 68 chr3 219346039 219346528 -8178050 - MER31B LTR ERV1 0 466 1 279 321 0 0 chr3 219346810 219346891 -8177687 - MER5A DNA MER1_type -93 96 16 360 0 0 0 chr3 219346999 219347039 -8177539 + (CA)n Simple_repeat Simple_repeat 2 41 0 189 233 0 23 chr3 219347149 219347192 -8177386 - MIR SINE MIR -82 126 85 1106 252 65 6 chr3 219347342 219347683 -8176895 - L2 LINE L2 -939 2375 2015 302 305 163 0 chr3 219347683 219347824 -8176754 - L2 LINE L2 -1805 1509 1346 24 0 0 0 chr3 219347951 219347975 -8176603 + AT_rich Low_complexity Low_complexity 1 24 0 1592 177 68 9 chr3 219348287 219348626 -8175952 - MLT1A1 LTR MaLR 0 365 7 1840 121 6 67 chr3 219349637 219349950 -8174628 - AluSx SINE Alu -18 294 1 24 0 0 0 chr3 219350817 219350841 -8173737 + AT_rich Low_complexity Low_complexity 1 24 0 186 324 59 0 chr3 219350852 219350920 -8173658 - MIR SINE MIR -111 151 80 267 333 24 0 chr3 219352543 219352669 -8171909 - LTR33A LTR ERVL -1 522 394 341 308 149 15 chr3 219352778 219352973 -8171605 - LTR50 LTR ERVL -574 221 1 205 366 30 10 chr3 219354052 219354153 -8170425 + L2 LINE L2 2927 3029 -243 607 197 22 13 chr3 219354467 219354695 -8169883 + CT-rich Low_complexity Low_complexity 1 230 0 329 318 0 28 chr3 219355923 219356030 -8168548 + MIR3 SINE MIR 66 169 -39 5760 121 9 4 chr3 219356079 219357215 -8167363 + L1PA15 LINE L1 5026 6165 0 242 325 62 97 chr3 219357673 219357981 -8166597 - L2 LINE L2 0 3272 2976 462 351 165 27 chr3 219358054 219359235 -8165343 - L2 LINE L2 -428 2886 1543 741 145 7 0 chr3 219360305 219360443 -8164135 - L1MA7 LINE L1 0 6291 6153 320 225 40 46 chr3 219361475 219361648 -8162930 + L1MC5 LINE L1 7579 7750 -211 1211 245 40 29 chr3 219361694 219362147 -8162431 - HsTC2 DNA Tc2 -1 1897 1264 337 247 90 0 chr3 219362145 219362234 -8162344 - HsTC2 DNA Tc2 -1751 147 51 * 4998 162 63 16 chr3 219362245 219363989 -8160589 - L1MA4 LINE L1 -5 6477 4665 4666 177 11 21 chr3 219363967 219364798 -8159780 - L1MA4 LINE L1 -2179 4149 3329 * 2120 123 20 3 chr3 219364798 219365098 -8159480 - AluSx SINE Alu -7 305 1 4666 177 11 21 chr3 219365098 219365324 -8159254 - L1MA4 LINE L1 -2999 3329 3102 3822 116 2 0 chr3 219365328 219365872 -8158706 - MER41B LTR ERV1 -88 547 3 4726 120 34 10 chr3 219365872 219366120 -8158458 - MER41B-int LTR ERV1 0 5946 5706 2353 92 0 3 chr3 219366120 219366426 -8158152 + AluSc SINE Alu 1 305 -4 4726 120 34 10 chr3 219366426 219366903 -8157675 - MER41B-int LTR ERV1 -240 5706 5203 243 61 0 0 chr3 219366909 219366942 -8157636 + (TTG)n Simple_repeat Simple_repeat 2 34 0 651 154 0 0 chr3 219366943 219367047 -8157531 - AluJb SINE Alu -38 274 171 1752 257 39 40 chr3 219367054 219367723 -8156855 - L1MA4 LINE L1 -4121 1207 540 810 332 39 20 chr3 219368450 219368887 -8155691 - L1M3a LINE L1 -5503 628 3 331 169 32 145 chr3 219369137 219369261 -8155317 - MIR SINE MIR -50 212 103 27 29 0 0 chr3 219369666 219369700 -8154878 + AT_rich Low_complexity Low_complexity 1 34 0 313 190 22 136 chr3 219369796 219369980 -8154598 - L1ME4a LINE L1 0 6121 5959 479 344 70 30 chr3 219371011 219371340 -8153238 + LTR67 LTR ERVL 32 373 -184 21 36 0 0 chr3 219371424 219371452 -8153126 + AT_rich Low_complexity Low_complexity 1 28 0 2051 61 0 0 chr3 219372337 219372583 -8151995 + AluY SINE Alu 44 289 -22 361 319 122 5 chr3 219372727 219372915 -8151663 - MLT1K LTR MaLR -124 464 255 262 416 0 0 chr3 219373677 219373790 -8150788 + MIR SINE MIR 16 128 -80 2052 121 0 4 chr3 219373824 219374105 -8150473 + AluSx SINE Alu 1 280 -32 2363 93 3 0 chr3 219374433 219374735 -8149843 - AluSp SINE Alu -10 303 1 3127 157 63 14 chr3 219374840 219375413 -8149165 + MER6A DNA MER2_type 1 601 -4 5489 233 23 28 chr3 219375570 219377236 -8147342 + L1MB8 LINE L1 3736 5393 -753 2912 194 56 46 chr3 219377744 219378529 -8146049 + L1MB8 LINE L1 5385 6177 -1 239 244 12 12 chr3 219378551 219378633 -8145945 - L1M LINE L1 -2412 5396 5315 409 325 105 33 chr3 219378641 219379060 -8145518 - L1M4 LINE L1 -821 5325 4877 820 182 11 0 chr3 219379102 219379278 -8145300 + CT-rich Low_complexity Low_complexity 2 179 0 1087 172 6 0 chr3 219379281 219379461 -8145117 - AluSg/x SINE Alu 0 312 132 457 174 12 0 chr3 219379609 219379695 -8144883 + Tigger5 DNA MER2_type 2237 2323 0 372 327 109 53 chr3 219379965 219380172 -8144406 - L1M4 LINE L1 -1609 4537 4343 2134 148 0 0 chr3 219380172 219380469 -8144109 - AluSx SINE Alu -15 297 1 372 327 109 53 chr3 219380469 219380878 -8143700 - L1M4 LINE L1 -1803 4343 3887 1635 142 11 4 chr3 219380945 219381219 -8143359 - THE1C LTR MaLR 0 375 100 9801 33 0 0 chr3 219381235 219383176 -8141402 - L1PA3 LINE L1 0 6155 4213 4707 29 0 0 chr3 219383176 219383755 -8140823 + L1PA3 LINE L1 3655 4233 -1913 537 183 0 29 chr3 219383755 219383859 -8140719 - THE1C LTR MaLR -274 101 1 1843 122 108 15 chr3 219383863 219384206 -8140372 - THE1C LTR MaLR 0 375 1 588 313 61 16 chr3 219385001 219385442 -8139136 - HAL1b LINE L1 -803 545 85 24 67 0 0 chr3 219385502 219385547 -8139031 + AT_rich Low_complexity Low_complexity 1 45 0 207 218 0 0 chr3 219386584 219386639 -8137939 + CT-rich Low_complexity Low_complexity 3 57 0 1118 217 25 16 chr3 219386827 219387071 -8137507 + MER45C DNA AcHobo 8 253 -700 230 241 19 0 chr3 219387331 219387385 -8137193 + MER45C DNA AcHobo 899 953 0 1717 198 18 3 chr3 219387392 219387731 -8136847 + MER2 DNA MER2_type 1 344 0 244 312 106 24 chr3 219388618 219388788 -8135790 - L2 LINE L2 -172 3100 2917 32 26 0 0 chr3 219389413 219389452 -8135126 + AT_rich Low_complexity Low_complexity 1 39 0 185 148 0 0 chr3 219389570 219389597 -8134981 - MIR SINE MIR -117 145 119 340 293 62 7 chr3 219389637 219389771 -8134807 - MIR3 SINE MIR -30 178 36 1935 129 49 0 chr3 219391200 219391486 -8133092 + AluSx SINE Alu 1 300 -12 2141 105 0 17 chr3 219392087 219392382 -8132196 - AluSx SINE Alu -22 290 1 229 231 0 0 chr3 219392433 219392498 -8132080 - HAL1 LINE L1 -354 2153 2089 186 43 0 0 chr3 219393406 219393429 -8131149 + (TG)n Simple_repeat Simple_repeat 2 24 0 209 233 39 68 chr3 219393565 219393668 -8130910 + MIR SINE MIR 91 190 -72 26 30 0 0 chr3 219394085 219394118 -8130460 + AT_rich Low_complexity Low_complexity 1 33 0 2035 100 72 0 chr3 219394281 219394571 -8130007 - AluSq SINE Alu -2 311 1 32 0 0 0 chr3 219394582 219394614 -8129964 + AT_rich Low_complexity Low_complexity 1 32 0 196 312 55 55 chr3 219394726 219394835 -8129743 - L2 LINE L2 -361 2953 2845 304 296 101 35 chr3 219395871 219396040 -8128538 - MIR3 SINE MIR -20 188 9 1807 100 28 92 chr3 219396542 219396901 -8127677 + L1PB4 LINE L1 5354 5689 -467 10108 177 8 10 chr3 219396907 219398201 -8126377 + L1MA3 LINE L1 16 1311 -6254 1985 113 52 23 chr3 219398201 219398546 -8126032 + THE1A LTR MaLR 1 355 0 11918 93 4 1 chr3 219398546 219400122 -8124456 + THE1A-int LTR MaLR 1 1580 0 2354 111 17 8 chr3 219400122 219400474 -8124104 + THE1A LTR MaLR 1 355 0 10108 177 8 10 chr3 219400474 219400997 -8123581 + L1MA3 LINE L1 1308 1831 -5734 * 11846 172 22 31 chr3 219400995 219405356 -8119222 + L1MA3 LINE L1 3300 7723 -1 2358 166 52 4 chr3 219405362 219405821 -8118757 + L1PB4 LINE L1 5672 6152 -4 2426 74 0 0 chr3 219406056 219406352 -8118226 - AluY SINE Alu -15 296 1 2276 102 0 26 chr3 219406543 219406856 -8117722 + AluSq SINE Alu 1 305 -8 207 69 0 0 chr3 219407389 219407418 -8117160 + (T)n Simple_repeat Simple_repeat 1 29 0 768 205 22 79 chr3 219407682 219407849 -8116729 + MER20 DNA MER1_type 3 178 -41 216 0 0 0 chr3 219407849 219407873 -8116705 + (TC)n Simple_repeat Simple_repeat 1 24 0 * 408 40 0 0 chr3 219407872 219407922 -8116656 + (CA)n Simple_repeat Simple_repeat 1 50 0 768 205 22 79 chr3 219407873 219407983 -8116595 + MER20 DNA MER1_type 178 218 -1 216 182 0 0 chr3 219408766 219408810 -8115768 + GA-rich Low_complexity Low_complexity 1 44 0 454 250 43 43 chr3 219408811 219408975 -8115603 + MER63A DNA MER1_type 47 210 0 223 297 31 0 chr3 219409060 219409124 -8115454 + MIR3 SINE MIR 118 183 -25 25 65 0 0 chr3 219409317 219409363 -8115215 + AT_rich Low_complexity Low_complexity 1 46 0 8738 181 69 70 chr3 219410421 219411002 -8113576 - L1MC3 LINE L1 -9 8056 7476 248 254 16 0 chr3 219411002 219411065 -8113513 - MLT1F1 LTR MaLR -451 116 53 8738 181 69 70 chr3 219411065 219412852 -8111726 - L1MC3 LINE L1 -589 7476 5629 521 224 7 14 chr3 219412849 219412992 -8111586 + L1M4 LINE L1 4803 4944 -1202 * 1867 243 26 31 chr3 219413025 219413667 -8110911 - L1MC3 LINE L1 -780 5646 5008 245 284 156 0 chr3 219413677 219413786 -8110792 - L1MC3 LINE L1 -6284 142 17 188 333 15 0 chr3 219413921 219413987 -8110591 + MIR3 SINE MIR 108 174 -34 183 205 103 0 chr3 219414838 219414877 -8109701 + MIR SINE MIR 61 103 -105 865 279 9 13 chr3 219414897 219415123 -8109455 - MIR SINE MIR -36 226 2 200 371 124 0 chr3 219415144 219415241 -8109337 - L2 LINE L2 -6 3266 3158 342 277 0 20 chr3 219415257 219415358 -8109220 + MER5A DNA MER1_type 4 102 -87 275 276 46 46 chr3 219415431 219415518 -8109060 + MIR3 SINE MIR 101 187 -21 228 346 98 8 chr3 219416104 219416237 -8108341 - MIR3 SINE MIR -17 191 47 244 306 157 9 chr3 219416519 219416627 -8107951 - MIR SINE MIR -74 188 65 216 227 34 0 chr3 219417338 219417426 -8107152 + (TA)n Simple_repeat Simple_repeat 2 92 0 559 282 58 6 chr3 219418070 219418244 -8106334 + MER5A DNA MER1_type 7 189 0 2703 7 0 16 chr3 219419891 219420198 -8104380 + AluYb8 SINE Alu 1 302 -16 1993 247 54 57 chr3 219420200 219420514 -8104064 + MER21B LTR ERV1 15 328 -535 885 229 6 0 chr3 219420514 219420671 -8103907 + FAM SINE Alu 1 158 -17 267 31 0 0 chr3 219420671 219420703 -8103875 + (CA)n Simple_repeat Simple_repeat 2 33 0 1993 247 54 57 chr3 219420703 219421124 -8103454 + MER21B LTR ERV1 326 749 -114 238 371 86 17 chr3 219421898 219422014 -8102564 - L2 LINE L2 -13 3259 3136 561 324 27 37 chr3 219422095 219422456 -8102122 + L2 LINE L2 2567 2922 -350 2537 107 8 14 chr3 219422478 219422844 -8101734 - THE1B LTR MaLR 0 364 1 488 317 3 92 chr3 219422987 219423325 -8101253 + L2 LINE L2 3006 3313 0 7029 103 26 0 chr3 219423803 219424820 -8099758 - MER52-int LTR ERV1 -1886 5205 4163 1006 114 0 7 chr3 219424921 219425061 -8099517 - AluJo SINE Alu -173 139 1 1095 243 34 55 chr3 219425189 219425666 -8098912 + MLT1C LTR MaLR 1 467 0 325 219 14 0 chr3 219426654 219426727 -8097851 - MER20 DNA MER1_type -145 74 1 236 167 21 0 chr3 219427078 219427126 -8097452 + MER20 DNA MER1_type 134 182 -37 2337 91 0 0 chr3 219428956 219429283 -8095295 + AluY SINE Alu 1 311 0 285 271 136 8 chr3 219429772 219429890 -8094688 - L2 LINE L2 -8 3264 3132 219 299 97 7 chr3 219430328 219430482 -8094096 + MIR SINE MIR 81 248 -14 324 206 11 43 chr3 219431813 219431890 -8092688 + MER58 DNA MER1_type 26 99 -2321 1035 232 35 74 chr3 219431890 219432310 -8092268 + MER72 LTR ERV1 4 388 -283 227 290 53 71 chr3 219432505 219432674 -8091904 + MIR SINE MIR 96 261 -1 182 323 10 40 chr3 219433455 219433554 -8091024 + L2 LINE L2 2957 3052 -220 225 0 0 0 chr3 219433638 219433663 -8090915 + (TG)n Simple_repeat Simple_repeat 2 26 0 2047 101 0 11 chr3 219434021 219434330 -8090248 - AluSq SINE Alu 0 306 1 402 294 53 53 chr3 219434893 219435063 -8089515 - MIR3 SINE MIR -4 204 35 198 103 0 0 chr3 219435993 219436022 -8088556 + (CA)n Simple_repeat Simple_repeat 2 30 0 29 0 0 0 chr3 219436895 219436924 -8087654 + AT_rich Low_complexity Low_complexity 1 29 0 1954 222 17 43 chr3 219436928 219437505 -8087073 - L1MA10 LINE L1 -13 6321 5760 2175 124 33 33 chr3 219437505 219437869 -8086709 - THE1B LTR MaLR 0 364 1 11636 98 3 6 chr3 219437869 219439451 -8085127 - THE1B-int LTR MaLR 0 1580 3 2330 125 14 22 chr3 219439453 219439820 -8084758 - THE1B LTR MaLR 0 364 1 189 289 148 39 chr3 219441321 219441449 -8083129 + L2 LINE L2 3026 3167 -146 36 40 0 0 chr3 219441469 219441519 -8083059 + AT_rich Low_complexity Low_complexity 1 50 0 7956 27 0 0 chr3 219441567 219443297 -8081281 - L1PA3 LINE L1 0 6155 4444 2174 26 0 0 chr3 219443297 219443566 -8081012 + L1PA3 LINE L1 4195 4463 -1683 2169 110 0 45 chr3 219445894 219446204 -8078374 + AluSx SINE Alu 1 296 -16 189 0 0 0 chr3 219447000 219447021 -8077557 + (TTTG)n Simple_repeat Simple_repeat 2 22 0 1125 256 44 26 chr3 219447133 219447473 -8077105 + MLT2F LTR ERVL 275 620 -43 1473 268 41 50 chr3 219447534 219448198 -8076380 + ERVL-F LTR ERVL 5099 5756 -8 228 268 16 71 chr3 219448198 219448325 -8076253 + MLT2F LTR ERVL 1 120 -543 743 307 44 29 chr3 219448338 219448654 -8075924 - MLT2F LTR ERVL -163 500 180 280 191 32 16 chr3 219448735 219448798 -8075780 + MLT2F LTR ERVL 515 578 -85 261 75 0 0 chr3 219449486 219449526 -8075052 + (TG)n Simple_repeat Simple_repeat 1 40 0 180 0 0 0 chr3 219449525 219449545 -8075033 + (GA)n Simple_repeat Simple_repeat 1 20 0 * 192 344 31 0 chr3 219449729 219449793 -8074785 - L2 LINE L2 -333 2939 2874 2309 100 7 0 chr3 219451156 219451456 -8073122 + AluSc SINE Alu 1 302 -7 180 234 43 0 chr3 219451463 219451510 -8073068 + L3 LINE CR1 1231 1279 -298 205 330 64 21 chr3 219451544 219451638 -8072940 + L3 LINE CR1 1456 1553 -24 2002 170 8 14 chr3 219452909 219453274 -8071304 + MLT1A1 LTR MaLR 1 363 -2 320 357 32 13 chr3 219454095 219454252 -8070326 + MIR3 SINE MIR 36 195 -13 262 317 87 0 chr3 219455074 219455178 -8069400 - MIR SINE MIR -73 135 23 781 231 22 60 chr3 219455420 219455688 -8068890 - MIR SINE MIR 0 262 5 292 223 53 21 chr3 219455721 219455815 -8068763 - L1ME4a LINE L1 -30 6091 5995 831 149 32 19 chr3 219456025 219456179 -8068399 - MER51B LTR ERV1 -96 281 126 204 97 0 0 chr3 219457047 219457078 -8067500 + (TG)n Simple_repeat Simple_repeat 2 32 0 247 362 58 14 chr3 219457934 219458072 -8066506 + L3b LINE CR1 1437 1580 -3 196 355 47 98 chr3 219458528 219458824 -8065754 + L2 LINE L2 2992 3272 0 221 350 77 0 chr3 219458969 219459086 -8065492 + MIR SINE MIR 56 181 -81 367 305 8 46 chr3 219459648 219459779 -8064799 - MIR3 SINE MIR -38 170 56 213 372 31 16 chr3 219459899 219460028 -8064550 - L3 LINE CR1 -87 1490 1360 381 75 0 0 chr3 219460300 219460353 -8064225 + (CAT)n Simple_repeat Simple_repeat 2 54 0 2079 144 0 0 chr3 219461803 219462101 -8062477 - AluJb SINE Alu -14 298 1 456 244 6 105 chr3 219462189 219462361 -8062217 + L1MEd LINE L1 1065 1219 -4900 1329 215 44 94 chr3 219462544 219463042 -8061536 - MLT1E1 LTR MaLR -181 473 1 270 296 34 11 chr3 219463112 219463200 -8061378 - MLT1H1 LTR MaLR -281 274 185 436 346 39 6 chr3 219463486 219463665 -8060913 + L1M4 LINE L1 3962 4146 -2000 407 269 17 4 chr3 219463890 219464005 -8060573 + MLT1E2 LTR MaLR 317 464 -190 27 62 0 0 chr3 219465057 219465105 -8059473 + AT_rich Low_complexity Low_complexity 1 48 0 558 93 13 0 chr3 219465105 219465180 -8059398 - AluJb SINE Alu -23 289 214 2276 102 0 0 chr3 219465218 219465513 -8059065 + AluSq SINE Alu 11 305 -8 665 257 6 34 chr3 219465589 219465768 -8058810 - AluJb SINE Alu -97 215 42 189 309 182 18 chr3 219465939 219466049 -8058529 - L2 LINE L2 -4 3268 3141 635 272 50 5 chr3 219466447 219466649 -8057929 - MIR SINE MIR -1 261 51 1073 272 97 42 chr3 219467197 219467694 -8056884 + L1ME LINE L1 6 529 -5541 472 266 15 25 chr3 219467742 219467945 -8056633 + L1ME LINE L1 671 871 -5199 21 0 0 0 chr3 219468604 219468625 -8055953 + AT_rich Low_complexity Low_complexity 1 21 0 1894 198 91 42 chr3 219469500 219469924 -8054654 + MLT2B1 LTR ERVL 1 403 -117 330 26 0 0 chr3 219469924 219469963 -8054615 + (TG)n Simple_repeat Simple_repeat 2 40 0 1894 198 91 42 chr3 219469963 219469989 -8054589 + MLT2B1 LTR ERVL 403 426 -94 639 52 31 0 chr3 219469989 219470085 -8054493 + (TAGA)n Simple_repeat Simple_repeat 4 102 0 1894 198 91 42 chr3 219470085 219470129 -8054449 + MLT2B1 LTR ERVL 426 520 0 1994 179 25 33 chr3 219470154 219470722 -8053856 - MLT2A2 LTR ERVL 0 554 1 889 262 22 9 chr3 219470722 219470935 -8053643 - MER8 DNA MER2_type -22 217 2 411 353 64 8 chr3 219471093 219471328 -8053250 + MIR SINE MIR 2 249 -13 189 213 43 0 chr3 219473193 219473240 -8051338 - L2 LINE L2 -2455 859 811 201 264 71 64 chr3 219473540 219473680 -8050898 - L2 LINE L2 -5 3308 3168 2122 110 7 7 chr3 219474147 219474446 -8050132 - AluSq SINE Alu -14 299 1 622 293 12 0 chr3 219475772 219475939 -8048639 + MER5B DNA MER1_type 4 172 -6 2746 129 7 5 chr3 219477481 219477908 -8046670 - MSTA LTR MaLR 0 428 1 346 240 215 25 chr3 219478509 219478630 -8045948 - MER5A DNA MER1_type 0 189 46 446 269 120 60 chr3 219478716 219478883 -8045695 - MER5B DNA MER1_type -1 177 1 741 251 6 6 chr3 219478905 219479080 -8045498 + MER5B DNA MER1_type 3 177 -1 207 274 55 0 chr3 219479607 219479680 -8044898 + MIR SINE MIR 107 183 -79 1494 123 0 14 chr3 219480726 219480937 -8043641 - AluSg SINE Alu -102 208 1 557 312 73 19 chr3 219480953 219481158 -8043420 - MIR SINE MIR -26 236 21 430 376 79 25 chr3 219481892 219482171 -8042407 - L2 LINE L2 -14 3258 2965 244 320 107 10 chr3 219482147 219482250 -8042328 + L2 LINE L2 3160 3272 0 * 526 222 114 59 chr3 219482265 219482564 -8042014 + MER31B LTR ERV1 1 371 -95 23 92 0 0 chr3 219482789 219482854 -8041724 + AT_rich Low_complexity Low_complexity 1 65 0 313 285 134 44 chr3 219482866 219483164 -8041414 - L1M4 LINE L1 -986 5160 4836 180 258 30 91 chr3 219483169 219483235 -8041343 - MIR3 SINE MIR -28 180 119 1306 132 39 0 chr3 219483338 219483542 -8041036 - THE1B LTR MaLR -152 212 1 304 352 67 11 chr3 219483828 219484007 -8040571 + MIR SINE MIR 3 191 -71 793 142 26 58 chr3 219484304 219484417 -8040161 + MSTD LTR MaLR 1 109 -287 2023 123 20 78 chr3 219484417 219484815 -8039763 - THE1C LTR MaLR 0 375 1 793 142 26 58 chr3 219484815 219484856 -8039722 + MSTD LTR MaLR 109 150 -246 21 0 0 0 chr3 219485479 219485500 -8039078 + AT_rich Low_complexity Low_complexity 1 21 0 758 178 0 0 chr3 219485572 219485707 -8038871 - L1MB5 LINE L1 -8 6166 6032 1799 166 11 3 chr3 219485759 219486043 -8038535 - AluJb SINE Alu -26 286 1 2110 125 0 3 chr3 219586300 219586588 -7937990 + AluSx SINE Alu 2 288 -24 680 236 47 24 chr3 219586737 219586949 -7937629 + MIR SINE MIR 46 262 0 1802 169 3 0 chr3 219587631 219587932 -7936646 - AluJb SINE Alu -10 302 1 675 203 0 8 chr3 219588242 219588365 -7936213 - FRAM SINE Alu -54 122 1 21 71 0 0 chr3 219588647 219588689 -7935889 + AT_rich Low_complexity Low_complexity 1 42 0 264 186 28 14 chr3 219588714 219588859 -7935719 + (TA)n Simple_repeat Simple_repeat 2 148 0 207 273 66 50 chr3 219588913 219589034 -7935544 - MIR SINE MIR -124 138 16 455 269 53 12 chr3 219589051 219589222 -7935356 + L2 LINE L2 1243 1420 -1894 2265 125 0 3 chr3 219589225 219589536 -7935042 + AluSx SINE Alu 1 310 -2 236 270 46 46 chr3 219590004 219590123 -7934455 + MIR SINE MIR 36 145 -63 2048 141 0 0 chr3 219590842 219591157 -7933421 - AluSx SINE Alu 0 315 1 1752 182 0 32 chr3 219591383 219591696 -7932882 - AluJo SINE Alu -9 303 1 1005 251 50 16 chr3 219591697 219592020 -7932558 - L1M4 LINE L1 -1818 4328 3995 227 281 0 0 chr3 219593136 219593193 -7931385 + L2 LINE L2 3184 3240 -32 355 228 0 0 chr3 219593534 219593613 -7930965 - L1MA10 LINE L1 -2 6332 6254 682 164 0 0 chr3 219594982 219595086 -7929492 + FLAM_C SINE Alu 22 125 -18 1295 238 10 20 chr3 219595125 219595419 -7929159 + AluJb SINE Alu 5 295 -17 2291 117 13 0 chr3 219595453 219595761 -7928817 + AluSx SINE Alu 1 312 0 291 269 0 82 chr3 219596518 219596641 -7927937 - MIR SINE MIR -75 133 20 6962 92 8 11 chr3 219597657 219598652 -7925926 - L1P LINE L1 -5111 1035 44 337 333 63 0 chr3 219599243 219599402 -7925176 - MIR SINE MIR 0 262 94 1206 163 5 5 chr3 219599462 219599671 -7924907 - L1MB1 LINE L1 0 6168 5960 642 127 15 75 chr3 219599675 219599809 -7924769 - MSTB LTR MaLR -300 126 1 217 269 0 0 chr3 219599878 219599930 -7924648 + MIR SINE MIR 48 99 -163 191 222 0 0 chr3 219600167 219600203 -7924375 + L2 LINE L2 3181 3216 -97 332 273 48 41 chr3 219600232 219600461 -7924117 + MLT1E LTR MaLR 1 229 -338 2339 115 13 10 chr3 219601414 219601798 -7922780 - L1PA5 LINE L1 -1 6153 5769 359 313 95 29 chr3 219602117 219602360 -7922218 + MIR SINE MIR 3 261 -1 249 280 21 65 chr3 219602641 219602734 -7921844 - MER58C DNA MER1_type 0 215 127 578 268 8 4 chr3 219602805 219603071 -7921507 + C-rich Low_complexity Low_complexity 1 267 0 1440 159 62 23 chr3 219603209 219603466 -7921112 - AluJo SINE Alu -31 281 15 400 204 11 0 chr3 219603556 219603644 -7920934 + L1MA6 LINE L1 6211 6299 -1 524 196 57 19 chr3 219603653 219603811 -7920767 + L1ME2 LINE L1 5721 5884 -280 390 96 43 200 chr3 219604494 219604561 -7920017 + L1MB5 LINE L1 6078 6154 -20 1963 109 23 0 chr3 219604561 219604826 -7919752 + AluSx SINE Alu 6 276 -36 276 30 0 0 chr3 219604834 219604867 -7919711 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 390 96 43 200 chr3 219604867 219604905 -7919673 + L1MB5 LINE L1 6162 6174 0 1161 253 4 0 chr3 219705570 219705807 -7818771 - AluJo SINE Alu -72 240 3 411 292 24 59 chr3 219705818 219706106 -7818472 - L1MCc LINE L1 -1772 5169 4892 1667 176 14 14 chr3 219706133 219706422 -7818156 - AluJo SINE Alu -23 289 1 681 143 17 25 chr3 219706452 219706571 -7818007 - FLAM_C SINE Alu -15 118 1 1160 303 29 6 chr3 219706579 219707103 -7817475 - L1MCc LINE L1 -2055 4886 4351 993 268 73 9 chr3 219707107 219707533 -7817045 - L1MCc LINE L1 -3289 3652 3200 484 291 7 33 chr3 219707865 219708016 -7816562 - L1MCc LINE L1 -5900 523 377 750 261 33 4 chr3 219708030 219708306 -7816272 - L1MCc LINE L1 -6109 314 31 225 0 0 0 chr3 219708489 219708514 -7816064 + (CA)n Simple_repeat Simple_repeat 2 26 0 22 56 0 0 chr3 219708672 219708708 -7815870 + AT_rich Low_complexity Low_complexity 1 36 0 195 328 50 55 chr3 219709197 219709398 -7815180 + MIR SINE MIR 32 231 -31 2333 89 0 7 chr3 219709450 219709795 -7814783 + AluSx SINE Alu 1 312 0 306 337 78 55 chr3 219710526 219710924 -7813654 + L2 LINE L2 2256 2662 -652 23 0 0 0 chr3 219711092 219711115 -7813463 + AT_rich Low_complexity Low_complexity 1 23 0 354 96 0 40 chr3 219711338 219711391 -7813187 - AluSg SINE Alu -2 299 270 1578 96 0 0 chr3 219711391 219711588 -7812990 - AluSg SINE Alu -113 197 1 354 96 0 40 chr3 219711588 219711612 -7812966 - AluSg SINE Alu -31 270 247 400 265 50 21 chr3 219714000 219714312 -7810266 - L1MC5 LINE L1 -393 7415 7261 404 299 37 70 chr3 219716145 219716386 -7808192 - L1ME LINE L1 -5616 454 222 222 118 0 0 chr3 219716729 219716763 -7807815 + (T)n Simple_repeat Simple_repeat 1 34 0 320 285 113 21 chr3 219716776 219716962 -7807616 - L1ME LINE L1 -337 5784 5582 2131 103 3 7 chr3 219717409 219717701 -7806877 + AluSx SINE Alu 1 291 -21 523 306 120 35 chr3 219717713 219718043 -7806535 + L2 LINE L2 2700 3093 -220 2095 203 83 4 chr3 219718043 219718511 -7806067 - LTR22 LTR ERVK -4 505 1 523 306 120 35 chr3 219718511 219718705 -7805873 + L2 LINE L2 3093 3269 -44 305 298 139 23 chr3 219718767 219718982 -7805596 - L1ME4a LINE L1 -92 6029 5790 23 54 0 0 chr3 219719292 219719329 -7805249 + AT_rich Low_complexity Low_complexity 1 37 0 34 24 0 0 chr3 219719575 219719616 -7804962 + AT_rich Low_complexity Low_complexity 1 41 0 24 0 0 0 chr3 219719666 219719690 -7804888 + AT_rich Low_complexity Low_complexity 1 24 0 2503 87 95 5 chr3 219720367 219720768 -7803810 - LTR7 LTR ERV1 -13 437 1 25 31 0 0 chr3 219721077 219721109 -7803469 + AT_rich Low_complexity Low_complexity 1 32 0 11083 64 4 6 chr3 219721339 219722799 -7801779 + HERV17 LTR ERV1 4560 6017 -2609 261 103 0 0 chr3 219722794 219722833 -7801745 + HERV17 LTR ERV1 7510 7548 -1078 * 2219 72 0 0 chr3 219722823 219723115 -7801463 + HERV17 LTR ERV1 8335 8626 0 2306 49 31 31 chr3 219723115 219723441 -7801137 + LTR17 LTR ERV1 1 326 -454 23 0 0 0 chr3 219723441 219723464 -7801114 + AT_rich Low_complexity Low_complexity 1 23 0 3375 69 2 7 chr3 219724108 219724558 -7800020 - LTR7 LTR ERV1 -2 448 1 2345 82 45 13 chr3 219724558 219724936 -7799642 - HERVH LTR ERV1 0 7713 7324 1254 148 19 0 chr3 219724936 219725152 -7799426 - HERVH LTR ERV1 -1894 5819 5600 4105 145 1 1 chr3 219725153 219725815 -7798763 - HERVH LTR ERV1 -2564 5149 4488 16094 132 38 53 chr3 219725817 219729774 -7794804 - HERVH LTR ERV1 -3720 3993 1 3396 71 0 7 chr3 219729776 219730227 -7794351 - LTR7 LTR ERV1 -2 448 1 186 305 34 0 chr3 219730557 219730616 -7793962 - L2 LINE L2 -39 3233 3173 705 56 0 0 chr3 219730674 219730764 -7793814 - L1PA11 LINE L1 -16 6158 6069 2311 87 0 3 chr3 219731189 219731499 -7793079 - AluY SINE Alu -2 309 1 2388 240 64 43 chr3 219731907 219733610 -7790968 - L1ME1 LINE L1 -7 6093 4361 225 222 34 34 chr3 219733656 219733832 -7790746 + (TA)n Simple_repeat Simple_repeat 1 176 0 189 119 0 51 chr3 219733849 219733908 -7790670 + (TA)n Simple_repeat Simple_repeat 1 56 0 548 219 62 39 chr3 219734046 219734302 -7790276 - L1M4 LINE L1 -1568 4578 4317 1151 268 96 62 chr3 219734464 219734954 -7789624 - L1ME1 LINE L1 -4579 1501 1029 2360 91 7 0 chr3 219734954 219735262 -7789316 - AluSg SINE Alu 0 310 1 1151 268 96 62 chr3 219735262 219736239 -7788339 - L1ME1 LINE L1 -5051 1029 3 1780 154 67 34 chr3 219736494 219736852 -7787726 + THE1C LTR MaLR 6 375 0 511 354 46 11 chr3 219736853 219737133 -7787445 + MLT1I LTR MaLR 120 409 0 5466 44 15 4 chr3 219737234 219737917 -7786661 + L1PA3 LINE L1 5463 6152 -3 1214 197 107 56 chr3 219738337 219738712 -7785866 - MSTD LTR MaLR 0 396 3 293 322 40 70 chr3 219738755 219738954 -7785624 + MLT1I LTR MaLR 195 387 -22 32 26 0 0 chr3 219739672 219739711 -7784867 + AT_rich Low_complexity Low_complexity 1 39 0 2254 105 0 0 chr3 219740377 219740671 -7783907 - AluSx SINE Alu -18 294 1 2187 100 4 0 chr3 219741103 219741415 -7783163 - AluSp SINE Alu 0 315 3 2101 139 0 0 chr3 219741426 219741736 -7782842 - AluSx SINE Alu -2 310 1 211 266 48 29 chr3 219741950 219742076 -7782502 + MIR SINE MIR 88 212 -50 5739 127 10 1 chr3 219742864 219744428 -7780150 + L1PA16 LINE L1 4600 6154 -12 25 0 0 0 chr3 219744428 219744453 -7780125 + AT_rich Low_complexity Low_complexity 1 25 0 25 51 0 0 chr3 219744677 219744716 -7779862 + AT_rich Low_complexity Low_complexity 1 39 0 266 200 0 15 chr3 219744794 219744859 -7779719 + L1PB1 LINE L1 5944 6007 -144 494 161 0 5 chr3 219744870 219744958 -7779620 - L1PA15 LINE L1 -259 5906 5822 930 157 74 4 chr3 219744996 219745225 -7779353 - L1 LINE L1 -2715 3431 3187 412 307 78 57 chr3 219745335 219745719 -7778859 + L2 LINE L2 2606 2999 -273 2427 64 0 0 chr3 219746388 219746686 -7777892 + AluY SINE Alu 4 301 -10 296 355 41 36 chr3 219746687 219746907 -7777671 - L2 LINE L2 -273 3040 2820 370 287 57 0 chr3 219747974 219748096 -7776482 - MIR3 SINE MIR -38 170 42 1954 139 3 32 chr3 219748155 219748465 -7776113 + AluSc SINE Alu 1 301 -8 246 149 0 0 chr3 219749035 219749051 -7775527 + (T)n Simple_repeat Simple_repeat 1 16 -31 2100 60 26 0 chr3 219749051 219749316 -7775262 - AluY SINE Alu -39 272 1 246 149 0 0 chr3 219749316 219749346 -7775232 + (T)n Simple_repeat Simple_repeat 15 47 0 235 346 8 46 chr3 219749464 219749594 -7774984 - MIR SINE MIR -44 218 94 2480 60 0 25 chr3 219752877 219753196 -7771382 + AluY SINE Alu 1 311 0 291 93 0 0 chr3 219753511 219753554 -7771024 + (TG)n Simple_repeat Simple_repeat 2 44 0 21 36 0 0 chr3 219754120 219754148 -7770430 + AT_rich Low_complexity Low_complexity 1 28 0 317 238 34 129 chr3 219754257 219754404 -7770174 + L2 LINE L2 2922 3054 -259 256 356 29 0 chr3 219754477 219754581 -7769997 + L2 LINE L2 3207 3313 0 315 299 11 23 chr3 219754700 219754787 -7769791 + L2 LINE L2 3179 3264 -8 4540 82 22 14 chr3 219755221 219755865 -7768713 - L1PA10 LINE L1 0 6168 5520 1777 100 0 0 chr3 219755865 219756096 -7768482 + AluY SINE Alu 1 231 -80 4716 252 38 19 chr3 219756215 219758607 -7765971 + L1PA15 LINE L1 1965 4539 -3045 5107 156 10 15 chr3 219758611 219760053 -7764525 + L1PA15 LINE L1 6173 7603 0 251 236 0 101 chr3 219760095 219760184 -7764394 - MIR SINE MIR 0 262 183 235 426 19 23 chr3 219761000 219761258 -7763320 + L2 LINE L2 342 598 -2716 550 158 0 30 chr3 219761499 219761600 -7762978 + MER4A LTR ERV1 1 98 -566 1765 133 3 75 chr3 219761604 219761972 -7762606 + MER4A LTR ERV1 265 664 0 960 275 67 35 chr3 219762233 219762549 -7762029 - MLT1G3 LTR MaLR 0 590 200 1556 171 70 40 chr3 219762550 219762790 -7761788 - THE1B LTR MaLR 0 364 110 4824 98 20 3 chr3 219762790 219763498 -7761080 + LTR30 LTR ERV1 3 722 0 1556 171 70 40 chr3 219763498 219763584 -7760994 - THE1B LTR MaLR -254 110 28 11032 109 11 2 chr3 219763586 219765151 -7759427 - THE1B-int LTR MaLR 0 1580 1 1939 138 44 41 chr3 219765151 219765514 -7759064 - THE1B LTR MaLR 0 364 1 643 296 26 30 chr3 219765514 219765741 -7758837 - MLT1G LTR MaLR -322 268 44 1401 236 232 14 chr3 219765941 219766445 -7758133 + MLT1E1 LTR MaLR 41 654 0 987 241 36 32 chr3 219766494 219766743 -7757835 + MLT1E1 LTR MaLR 405 654 0 314 328 99 12 chr3 219767093 219767264 -7757314 + L1ME LINE L1 139 324 -5881 961 194 153 0 chr3 219768126 219768394 -7756184 + MER33 DNA MER1_type 15 323 -1 304 267 102 23 chr3 219768412 219768588 -7755990 + L1ME LINE L1 1137 1326 -5070 587 324 26 10 chr3 219768635 219768944 -7755634 + L1ME LINE L1 1498 1811 -4585 529 258 145 7 chr3 219769238 219769677 -7754901 + L1ME LINE L1 2175 2633 -3582 303 326 44 52 chr3 219771855 219771990 -7752588 - L2 LINE L2 0 3272 3139 3992 70 2 21 chr3 219772154 219772685 -7751893 + LTR17 LTR ERV1 260 780 0 8869 166 57 72 chr3 219772685 219775058 -7749520 + HERV17 LTR ERV1 1 2338 -6288 * 10870 58 14 1 chr3 219775056 219776410 -7748168 + HERV17 LTR ERV1 2741 4111 -4515 318 340 46 13 chr3 219776696 219776849 -7747729 - MIR SINE MIR -55 207 50 1510 271 29 41 chr3 219777292 219777775 -7746803 + MLT1E LTR MaLR 50 526 -67 183 299 0 65 chr3 219778271 219778348 -7746230 + MIR SINE MIR 185 256 -6 230 299 0 0 chr3 219778849 219778916 -7745662 + GA-rich Low_complexity Low_complexity 3 69 0 1145 327 45 58 chr3 219779523 219780640 -7743938 - L1PA12 LINE L1 -5554 2027 123 603 173 0 0 chr3 219781498 219781602 -7742976 + L1P3 LINE L1 5428 5531 -641 25 31 0 0 chr3 219781726 219781758 -7742820 + GC_rich Low_complexity Low_complexity 1 32 0 1966 212 17 17 chr3 219781961 219782427 -7742151 - L1P LINE L1 -3420 2726 2261 1842 182 35 3 chr3 219782429 219782770 -7741808 - THE1B LTR MaLR -8 356 5 300 53 0 0 chr3 219782787 219782825 -7741753 + (CA)n Simple_repeat Simple_repeat 2 39 0 229 182 10 101 chr3 219782825 219782924 -7741654 - L1MC4 LINE L1 -1339 6703 6614 2057 126 83 6 chr3 219783603 219783951 -7740627 + THE1C LTR MaLR 1 375 0 297 338 90 30 chr3 219783984 219784117 -7740461 + L2 LINE L2 3132 3272 0 2120 129 9 3 chr3 219784605 219784937 -7739641 - L1PA15 LINE L1 -1 6164 5831 3190 203 13 11 chr3 219784943 219785658 -7738920 - L1 LINE L1 -1089 5057 4342 21 0 0 0 chr3 219785723 219785744 -7738834 + AT_rich Low_complexity Low_complexity 1 21 0 364 239 63 0 chr3 219786600 219786742 -7737836 - L1MC4 LINE L1 -1853 5955 5805 2299 83 0 16 chr3 219786744 219787058 -7737520 + AluSc SINE Alu 1 309 0 184 347 14 0 chr3 219787307 219787379 -7737199 - L2 LINE L2 -9 3263 3191 5009 93 1 0 chr3 219788587 219789296 -7735282 - L1P LINE L1 -3027 3119 2410 6797 63 8 2 chr3 219789297 219790767 -7733811 + L1PA7 LINE L1 4687 6152 -2 2620 245 30 19 chr3 219790917 219791587 -7732991 + L1ME LINE L1 15 691 -5851 2550 191 31 48 chr3 219791585 219792255 -7732323 + L1ME LINE L1 5147 5805 -839 * 2208 101 10 0 chr3 219792900 219793198 -7731380 + AluSx SINE Alu 1 301 -11 2624 49 0 0 chr3 219793396 219793703 -7730875 + AluY SINE Alu 2 308 -3 387 0 0 0 chr3 219794021 219794064 -7730514 + (TA)n Simple_repeat Simple_repeat 1 43 0 2201 101 0 22 chr3 219794270 219794632 -7729946 - AluSx SINE Alu 0 355 1 2398 70 3 10 chr3 219795487 219795800 -7728778 - AluY SINE Alu 0 311 1 485 300 61 30 chr3 219796024 219796417 -7728161 + L1ME LINE L1 5817 6213 -455 184 310 28 14 chr3 219796656 219796727 -7727851 - MIR SINE MIR -109 153 82 321 341 24 41 chr3 219796761 219796931 -7727647 - L1MEd LINE L1 -2308 3821 3655 528 261 74 39 chr3 219797221 219797611 -7726967 - L1MEd LINE L1 -3452 2677 2274 3128 91 0 0 chr3 219797671 219798109 -7726469 - L1PA7 LINE L1 -780 5366 4929 6199 60 5 2 chr3 219798109 219798884 -7725694 + L1PA7 LINE L1 5366 6153 -1 203 255 0 0 chr3 219798916 219798967 -7725611 + MIR SINE MIR 201 251 -11 434 284 85 24 chr3 219798975 219799186 -7725392 + MIR SINE MIR 3 226 -36 874 306 166 17 chr3 219799280 219799763 -7724815 - MLT1H1 LTR MaLR 0 555 1 415 252 110 31 chr3 219800183 219800484 -7724094 - L1MEd LINE L1 -4840 1289 989 439 323 66 57 chr3 219800507 219800857 -7723721 - L1MEd LINE L1 -5323 796 444 427 218 8 75 chr3 219801227 219801360 -7723218 - MER112 DNA MER1_type -38 222 99 195 281 0 0 chr3 219801375 219801457 -7723121 + CT-rich Low_complexity Low_complexity 1 82 0 189 262 0 107 chr3 219802566 219802609 -7721969 + MIR SINE MIR 112 143 -119 2825 178 8 0 chr3 219802609 219803081 -7721497 + MER66A LTR ERV1 3 478 0 189 262 0 107 chr3 219803081 219803121 -7721457 + MIR SINE MIR 143 186 -76 405 282 35 14 chr3 219803232 219803374 -7721204 + MIR SINE MIR 112 256 -6 2451 66 3 3 chr3 219804447 219804750 -7719828 + AluY SINE Alu 1 303 -8 348 324 7 28 chr3 219804936 219805078 -7719500 - L2 LINE L2 -2 3311 3173 362 211 114 9 chr3 219805246 219805360 -7719218 + MLT1E LTR MaLR 468 593 0 881 288 87 48 chr3 219805684 219806121 -7718457 - LTR16B LTR ERVL -6 458 5 2292 258 48 29 chr3 219808277 219809075 -7715503 - L1ME1 LINE L1 -5 6161 5316 1765 161 25 3 chr3 219809075 219809361 -7715217 + AluJb SINE Alu 1 292 -20 2292 258 48 29 chr3 219809361 219810080 -7714498 - L1ME1 LINE L1 -850 5316 4613 1405 213 20 0 chr3 219810087 219810388 -7714190 - L1M3 LINE L1 -507 5664 5358 1763 244 24 19 chr3 219810388 219810856 -7713722 - L1M3 LINE L1 -1001 5145 4676 2552 174 18 12 chr3 219810857 219811345 -7713233 + L1MB1 LINE L1 5672 6162 -6 669 161 11 35 chr3 219811347 219811714 -7712864 + GA-rich Low_complexity Low_complexity 1 358 0 37 39 0 0 chr3 219812068 219812119 -7712459 + AT_rich Low_complexity Low_complexity 1 51 0 398 300 5 21 chr3 219812126 219812316 -7712262 - L1M3 LINE L1 -1535 4611 4425 320 237 32 0 chr3 219812350 219812443 -7712135 - L1MD3 LINE L1 -8 7987 7892 1446 291 34 35 chr3 219812450 219813192 -7711386 + L1MEc LINE L1 339 1079 -5317 4052 247 52 37 chr3 219813293 219814457 -7710121 + L1MDa LINE L1 17 1198 -5342 8742 221 51 43 chr3 219814464 219816619 -7707959 + L1MA4A LINE L1 140 2278 -4930 213 65 0 0 chr3 219816619 219816650 -7707928 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 8742 221 51 43 chr3 219816650 219819673 -7704905 + L1MA4A LINE L1 2278 5354 -1854 1821 204 167 79 chr3 219819675 219820452 -7704126 + LTR28 LTR ERV1 1 982 -38 432 257 38 34 chr3 219820450 219820591 -7703987 + LTR28 LTR ERV1 676 1016 0 * 5358 162 43 34 chr3 219820591 219820698 -7703880 + L1MA4A LINE L1 5353 5458 -1907 180 0 0 0 chr3 219820698 219820718 -7703860 + (TAAAA)n Simple_repeat Simple_repeat 3 22 0 5358 162 43 34 chr3 219820718 219820868 -7703710 + L1MA4A LINE L1 5458 5605 -1760 2605 52 0 0 chr3 219820868 219821177 -7703401 + AluY SINE Alu 1 309 -2 5358 162 43 34 chr3 219821177 219822588 -7701990 + L1MA4A LINE L1 5605 7056 -309 396 0 0 0 chr3 219822588 219822632 -7701946 + (TG)n Simple_repeat Simple_repeat 1 44 0 5358 162 43 34 chr3 219822632 219822932 -7701646 + L1MA4A LINE L1 7056 7352 -13 334 224 129 9 chr3 219823002 219823118 -7701460 + L1ME1 LINE L1 5870 5999 -167 2541 73 6 9 chr3 219823158 219823500 -7701078 - LTR6B LTR ERV1 0 558 218 356 136 24 48 chr3 219823496 219823580 -7700998 - LTR6B LTR ERV1 -431 127 1 * 308 275 0 0 chr3 219823582 219823662 -7700916 + L1MA10 LINE L1 6191 6270 -64 591 279 0 0 chr3 219823663 219823803 -7700775 + FLAM_A SINE Alu 1 140 -2 238 154 108 0 chr3 219823804 219823869 -7700709 + L1MA10 LINE L1 6260 6331 -3 585 317 109 53 chr3 219823885 219824288 -7700290 - L1M2 LINE L1 -888 1650 61 23 54 0 0 chr3 219824654 219824691 -7699887 + AT_rich Low_complexity Low_complexity 1 37 0 421 305 6 23 chr3 219824790 219824964 -7699614 + L1MCc LINE L1 25 195 -6228 1537 186 52 64 chr3 219824977 219825526 -7699052 - MER67C LTR ERV1 -8 506 1 536 136 16 34 chr3 219825682 219825793 -7698785 - THE1C LTR MaLR -285 90 1 1853 151 30 14 chr3 219825793 219826277 -7698301 - L1M3 LINE L1 -712 5471 4979 1781 251 119 6 chr3 219827232 219827778 -7696800 + MLT1E2 LTR MaLR 17 624 -2 1945 205 43 36 chr3 219827900 219828395 -7696183 - MLT1D LTR MaLR -2 622 3 455 213 19 0 chr3 219829332 219829440 -7695138 - L1MA10 LINE L1 -5 6329 6220 2406 64 0 16 chr3 219829669 219829982 -7694596 - AluY SINE Alu -3 308 1 332 40 0 20 chr3 219830177 219830227 -7694351 - L1PA4 LINE L1 -243 5911 5863 1891 22 9 4 chr3 219830227 219830457 -7694121 + L1PA4 LINE L1 5924 6155 0 264 350 30 13 chr3 219830466 219830612 -7693966 + MIR3 SINE MIR 2 151 -69 511 297 59 39 chr3 219830867 219831153 -7693425 - L1ME LINE L1 -386 5784 5493 21 0 0 0 chr3 219831180 219831201 -7693377 + AT_rich Low_complexity Low_complexity 1 21 0 226 244 64 0 chr3 219831201 219831279 -7693299 - L1MA10 LINE L1 -8 6326 6244 258 291 0 13 chr3 219831311 219831334 -7693244 - L1MA10 LINE L1 -83 6251 6229 1504 272 43 30 chr3 219831334 219831874 -7692704 - L1ME1 LINE L1 -96 6139 5593 1485 246 60 42 chr3 219831877 219832563 -7692015 - L1ME1 LINE L1 -859 5356 4659 2444 199 47 9 chr3 219832575 219833178 -7691400 + MER21B LTR ERV1 1 700 -163 1412 204 52 50 chr3 219833178 219833620 -7690958 - MER65A LTR ERV1 0 445 3 2444 199 47 9 chr3 219833620 219833673 -7690905 + MER21B LTR ERV1 700 750 -113 699 196 50 180 chr3 219833788 219834243 -7690335 - MER68 LTR ERV1 -166 396 1 458 275 96 0 chr3 219834245 219834474 -7690104 - L1ME1 LINE L1 -2168 4047 3797 895 258 80 42 chr3 219834493 219835195 -7689383 - L1ME1 LINE L1 -3528 2687 1999 874 242 56 16 chr3 219835201 219835453 -7689125 - L1ME1 LINE L1 -5749 647 386 1957 218 39 25 chr3 219835558 219836045 -7688533 - MLT1D LTR MaLR -3 502 9 621 321 8 21 chr3 219836046 219836283 -7688295 - L1ME1 LINE L1 -6121 275 42 22 35 0 0 chr3 219836435 219836464 -7688114 + AT_rich Low_complexity Low_complexity 1 29 0 23 54 0 0 chr3 219836546 219836583 -7687995 + AT_rich Low_complexity Low_complexity 1 37 0 261 320 102 0 chr3 219836612 219836809 -7687769 - L1M4 LINE L1 -1052 5094 4878 241 206 0 52 chr3 219836853 219836950 -7687628 - L1MCa LINE L1 -4646 1569 1478 422 322 107 58 chr3 219837014 219837737 -7686841 - L1MCa LINE L1 -4924 1472 715 851 268 166 5 chr3 219838560 219838940 -7685638 + LTR50 LTR ERVL 353 793 -2 205 369 81 44 chr3 219840314 219840356 -7684222 - L3 LINE CR1 -1 1576 1537 1644 194 107 83 chr3 219840356 219840985 -7683593 - LTR48B LTR ERV1 0 644 1 205 369 81 44 chr3 219840985 219841286 -7683292 - L3 LINE CR1 -40 1537 1220 229 327 9 18 chr3 219842185 219842295 -7682283 + MLT1J2 LTR MaLR 101 209 -241 2237 110 0 0 chr3 219842706 219843005 -7681573 - AluSg SINE Alu -11 299 1 610 245 56 26 chr3 219843466 219843786 -7680792 + MER93b LTR ERV1 12 373 0 * 1703 255 75 41 chr3 219843786 219844363 -7680215 - MLT1E2 LTR MaLR -29 597 1 258 209 0 0 chr3 219844403 219844446 -7680132 - tRNA-Glu-GAG tRNA tRNA -32 43 1 21207 74 5 0 chr3 219844452 219848102 -7676476 + L1PA6 LINE L1 2497 6154 0 5657 96 13 16 chr3 219848110 219848964 -7675614 - L1MA1 LINE L1 -9 6293 5443 4299 174 31 29 chr3 219848965 219849261 -7675317 - L1M1 LINE L1 -6225 1340 1046 1877 133 65 6 chr3 219849261 219849585 -7674993 - MER61A LTR ERV1 0 343 1 4299 174 31 29 chr3 219849585 219850085 -7674493 - L1M1 LINE L1 -6519 1046 542 1400 324 42 56 chr3 219850693 219851896 -7672682 - HERVI LTR ERV1 -138 6511 5326 331 245 21 21 chr3 219852341 219852435 -7672143 - HERVI LTR ERV1 -1818 4831 4738 1280 312 33 24 chr3 219852656 219853225 -7671353 - HERVI LTR ERV1 -2029 5756 5179 1873 119 44 48 chr3 219853225 219853519 -7671059 + AluSp SINE Alu 1 293 -20 1280 312 33 24 chr3 219853519 219853584 -7670994 - HERVI LTR ERV1 -2606 5179 5116 457 271 96 16 chr3 219853613 219853801 -7670777 - HERVI LTR ERV1 -2748 5037 4835 524 213 103 22 chr3 219853822 219853958 -7670620 - LTR18B LTR ERVL -115 499 353 917 339 39 21 chr3 219853967 219854590 -7669988 - HERVI LTR ERV1 -5858 1927 1294 553 360 3 3 chr3 219854781 219855067 -7669511 - HERVI LTR ERV1 -6782 1003 718 376 235 29 20 chr3 219855248 219855350 -7669228 - HERVI LTR ERV1 -6279 370 268 2146 210 45 36 chr3 219856043 219856571 -7668007 - L1M1 LINE L1 -7017 548 16 261 139 0 0 chr3 219857079 219857122 -7667456 + (TTTTC)n Simple_repeat Simple_repeat 4 46 0 293 291 49 22 chr3 219857557 219857715 -7666863 + MIR SINE MIR 30 193 -69 5468 114 36 2 chr3 219858236 219859524 -7665054 - L1PA10 LINE L1 -10 6158 4834 267 175 19 169 chr3 219859755 219859915 -7664663 + L1MC5 LINE L1 7760 7895 -66 25 31 0 0 chr3 219860916 219860948 -7663630 + AT_rich Low_complexity Low_complexity 1 32 0 250 204 23 23 chr3 219861662 219861750 -7662828 + GA-rich Low_complexity Low_complexity 4 91 0 297 306 91 67 chr3 219862089 219862298 -7662280 + L3 LINE CR1 1338 1551 -26 314 380 129 43 chr3 219863401 219863888 -7660690 - L3 LINE CR1 -5 1572 1044 1286 282 17 32 chr3 219863970 219864374 -7660204 + MLT1J2 LTR MaLR 22 419 -31 279 0 0 0 chr3 219864844 219864899 -7659679 + (CA)n Simple_repeat Simple_repeat 1 86 0 279 0 0 0 chr3 219864899 219864930 -7659648 + (CA)n Simple_repeat Simple_repeat 2 32 0 360 0 0 0 chr3 219865899 219865939 -7658639 + (TA)n Simple_repeat Simple_repeat 1 40 0 381 86 0 0 chr3 219866596 219866654 -7657924 + (TG)n Simple_repeat Simple_repeat 2 59 0 597 284 18 75 chr3 219866824 219866859 -7657719 - LTR16C LTR ERVL 0 491 456 2202 87 6 32 chr3 219866859 219867170 -7657408 + AluSc SINE Alu 1 303 -6 597 284 18 75 chr3 219867170 219867416 -7657162 - LTR16C LTR ERVL -35 456 226 2346 147 63 0 chr3 219867424 219867818 -7656760 - MSTA LTR MaLR -2 426 8 283 343 32 98 chr3 219868675 219869054 -7655524 - L2 LINE L2 0 3272 2919 479 358 40 18 chr3 219869721 219869995 -7654583 + LTR16A1 LTR ERVL 176 455 -2 540 289 94 0 chr3 219871182 219871383 -7653195 + L2 LINE L2 1799 2018 -1296 672 276 31 22 chr3 219871385 219871599 -7652979 + MLT1A2 LTR MaLR 121 429 -38 723 285 104 33 chr3 219871887 219872224 -7652354 + L2 LINE L2 2947 3307 -6 265 348 70 16 chr3 219872364 219872551 -7652027 + MIR SINE MIR 60 256 -6 21 0 0 0 chr3 219872688 219872709 -7651869 + AT_rich Low_complexity Low_complexity 1 21 0 201 121 0 0 chr3 219874137 219874170 -7650408 + (TA)n Simple_repeat Simple_repeat 1 33 0 219 146 0 0 chr3 219874863 219874904 -7649674 + (CAT)n Simple_repeat Simple_repeat 2 42 0 26 0 0 0 chr3 219874925 219874951 -7649627 + AT_rich Low_complexity Low_complexity 1 26 0 23 33 0 0 chr3 219875234 219875264 -7649314 + AT_rich Low_complexity Low_complexity 1 30 0 10394 150 16 6 chr3 219875299 219878216 -7646362 - L1MA1 LINE L1 -10 7711 4764 618 196 166 102 chr3 219878435 219878875 -7645703 + LTR37B LTR ERV1 1 468 0 21 36 0 0 chr3 219879267 219879295 -7645283 + AT_rich Low_complexity Low_complexity 1 28 0 958 213 17 59 chr3 219879476 219879513 -7645065 - MLT2D LTR ERVL -2 412 375 272 27 27 0 chr3 219879513 219879550 -7645028 + (TG)n Simple_repeat Simple_repeat 2 39 0 958 213 17 59 chr3 219879550 219879584 -7644994 - MLT2D LTR ERVL -39 375 341 3792 80 4 0 chr3 219879584 219880096 -7644482 - L1PA8 LINE L1 0 6172 5659 958 213 17 59 chr3 219880096 219880262 -7644316 - MLT2D LTR ERVL -73 341 184 1543 193 7 0 chr3 219880262 219880542 -7644036 + L1 LINE L1 1084 1365 -6200 6028 133 14 12 chr3 219880543 219881580 -7642998 - L1MA1 LINE L1 -4596 2969 1931 1010 153 0 0 chr3 219881570 219881740 -7642838 + L1 LINE L1 5245 5414 -2151 * 183 139 0 0 chr3 219882065 219882101 -7642477 + (GA)n Simple_repeat Simple_repeat 2 37 0 1296 266 124 42 chr3 219882127 219882740 -7641838 - MLT2F LTR ERVL 0 663 1 5287 280 43 44 chr3 219882742 219884684 -7639894 - ERVL LTR ERVL -10 5754 3815 2361 221 82 22 chr3 219884684 219885651 -7638927 + L1MC2 LINE L1 4537 5590 -754 1574 178 0 68 chr3 219885651 219885972 -7638606 - AluJo SINE Alu -11 301 3 2361 221 82 22 chr3 219885972 219886271 -7638307 + L1MC2 LINE L1 5590 5869 -475 1069 238 88 44 chr3 219886272 219886856 -7637722 + MER76 LTR ERV 2 661 -27 2202 140 61 33 chr3 219886884 219887342 -7637236 + L1MC2 LINE L1 5865 6335 -9 818 281 56 37 chr3 219887427 219887824 -7636754 - ERVL LTR ERVL -1841 3644 3226 912 291 50 14 chr3 219887842 219888124 -7636454 - ERVL LTR ERVL -2547 3107 2816 768 311 86 53 chr3 219888123 219888648 -7635930 - ERVL LTR ERVL -1431 4333 3792 * 2436 113 2 65 chr3 219888891 219889291 -7635287 + THE1C LTR MaLR 1 375 0 9550 119 36 54 chr3 219889291 219890164 -7634414 + THE1C-int LTR MaLR 1 833 -747 1167 73 6 12 chr3 219890164 219890329 -7634249 + L1PA6 LINE L1 5991 6154 0 9550 119 36 54 chr3 219890329 219891064 -7633514 + THE1C-int LTR MaLR 833 1580 0 2362 116 30 11 chr3 219891066 219891427 -7633151 + THE1C LTR MaLR 3 370 -5 417 139 0 38 chr3 219891427 219891506 -7633072 - MADE1 DNA Mariner 0 80 5 1273 118 128 0 chr3 219891842 219892045 -7632533 - MER30 DNA MER1_type -1 229 1 206 372 21 0 chr3 219892449 219892543 -7632035 + L2 LINE L2 2841 2936 -377 2630 241 23 23 chr3 219892863 219893549 -7631029 - MER76 LTR ERV -2 686 1 2745 234 36 2 chr3 219893599 219894230 -7630348 - MER82 DNA MER2_type 0 653 1 1574 148 7 11 chr3 219894446 219894723 -7629855 + L1PA16 LINE L1 5891 6166 0 250 320 18 47 chr3 219895277 219895552 -7629026 - L1M4 LINE L1 -1095 5051 4785 297 0 0 0 chr3 219895845 219895878 -7628700 + (TTG)n Simple_repeat Simple_repeat 2 34 0 6859 110 27 2 chr3 219896018 219896988 -7627590 - THE1B-int LTR MaLR -586 994 1 2452 98 19 25 chr3 219896988 219897354 -7627224 - THE1B LTR MaLR 0 364 1 228 267 69 10 chr3 219898405 219898506 -7626072 + LTR67 LTR ERVL 440 546 -11 189 316 0 18 chr3 219898962 219899019 -7625559 + MIR3 SINE MIR 109 164 -44 21 36 0 0 chr3 219899185 219899213 -7625365 + AT_rich Low_complexity Low_complexity 1 28 0 2793 7 0 7 chr3 219899328 219899635 -7624943 + AluYa5 SINE Alu 1 305 -6 258 231 77 44 chr3 219900411 219900502 -7624076 - MLT1I LTR MaLR -254 155 62 2379 140 6 6 chr3 219901729 219902093 -7622485 - THE1B LTR MaLR 0 364 1 9835 116 37 39 chr3 219902093 219903677 -7620901 - THE1B-int LTR MaLR 0 1580 1 2348 134 14 0 chr3 219903677 219904036 -7620542 - THE1B LTR MaLR 0 364 1 334 345 123 20 chr3 219904085 219904482 -7620096 - MLT1J LTR MaLR -73 438 1 532 283 102 6 chr3 219904663 219904829 -7619749 + MIR SINE MIR 1 182 -80 258 286 0 0 chr3 219904830 219904907 -7619671 + (CA)n Simple_repeat Simple_repeat 2 78 0 305 300 117 67 chr3 219905278 219905724 -7618854 + L1M4 LINE L1 2938 3405 -2741 672 291 95 32 chr3 219906162 219906870 -7617708 + L1M4 LINE L1 4093 4844 -1302 195 42 0 0 chr3 219906875 219906899 -7617679 + (TA)n Simple_repeat Simple_repeat 2 25 0 1402 210 80 5 chr3 219906980 219907403 -7617175 - L1M4c LINE L1 -5289 1095 641 614 225 10 0 chr3 219907400 219907603 -7616975 + L1PA16 LINE L1 1566 1864 -4283 * 11689 227 15 12 chr3 219907608 219907945 -7616633 + L1PA16 LINE L1 2052 2387 -3779 1418 206 53 0 chr3 219907945 219908227 -7616351 + AluJb SINE Alu 3 299 -13 11689 227 15 12 chr3 219908227 219911997 -7612581 + L1PA16 LINE L1 2387 6166 0 1772 243 49 16 chr3 219912062 219913063 -7611515 + L1M4c LINE L1 2536 3571 -3277 6409 225 25 10 chr3 219913202 219914619 -7609959 + L1M3 LINE L1 678 2115 -4734 4826 245 40 20 chr3 219914616 219916047 -7608531 + L1M3 LINE L1 4382 5841 -1007 * 2828 236 74 107 chr3 219916038 219917468 -7607110 + L1M3e LINE L1 74 1456 -5574 * 1757 164 140 29 chr3 219917470 219917809 -7606769 - MSTA LTR MaLR 0 428 40 5438 77 32 4 chr3 219917809 219918554 -7606024 + MER4E LTR ERV1 1 766 0 1757 164 140 29 chr3 219918554 219918599 -7605979 - MSTA LTR MaLR -388 40 1 1753 236 10 43 chr3 219918626 219919081 -7605497 + L1M3e LINE L1 1646 2086 -4941 2095 122 10 7 chr3 219919081 219919385 -7605193 + AluSx SINE Alu 1 305 -7 1753 236 10 43 chr3 219919385 219919445 -7605133 + L1M3e LINE L1 2086 2146 -4881 808 187 71 29 chr3 219919458 219919756 -7604822 + L1M3 LINE L1 5872 6187 -695 3832 207 20 3 chr3 219919760 219920498 -7604080 + L1M1 LINE L1 12 762 -6803 1036 68 8 0 chr3 219920601 219920734 -7603844 + AluY SINE Alu 164 297 -14 322 260 73 53 chr3 219920791 219920941 -7603637 - L1M4 LINE L1 -2232 3914 3762 777 222 33 17 chr3 219921035 219921215 -7603363 - AluJo SINE Alu -10 302 120 225 211 0 0 chr3 219921468 219921525 -7603053 + (TTGG)n Simple_repeat Simple_repeat 4 60 0 462 18 0 0 chr3 219921676 219921731 -7602847 + (TAGA)n Simple_repeat Simple_repeat 2 56 0 235 250 143 37 chr3 219921747 219921963 -7602615 + L1MC5 LINE L1 7539 7777 -184 1748 124 57 21 chr3 219922124 219922406 -7602172 - AluSc SINE Alu -17 292 1 1977 144 11 28 chr3 219922438 219922793 -7601785 - L1PA16 LINE L1 -4 6162 5814 1725 123 0 91 chr3 219923129 219923437 -7601141 + AluSq SINE Alu 1 280 -33 1668 241 39 24 chr3 219923566 219924031 -7600547 + MER99 DNA DNA 350 821 -7 237 319 22 67 chr3 219924147 219924282 -7600296 + MLT1L LTR MaLR 405 533 -82 1397 282 75 24 chr3 219924285 219924795 -7599783 - MLT1H LTR MaLR -2 547 12 216 0 0 0 chr3 219926179 219926203 -7598375 + (A)n Simple_repeat Simple_repeat 1 24 0 587 300 39 17 chr3 219926704 219926934 -7597644 - MIR SINE MIR 0 262 28 1764 171 15 16 chr3 219927518 219927881 -7596697 - MER47B DNA MER2_type -1 417 5 402 21 0 0 chr3 219928454 219928501 -7596077 + (TG)n Simple_repeat Simple_repeat 2 48 0 389 272 174 5 chr3 219928987 219929171 -7595407 - MIR SINE MIR -45 217 3 21 0 0 0 chr3 219929660 219929681 -7594897 + AT_rich Low_complexity Low_complexity 1 21 0 2094 124 0 17 chr3 219929798 219929960 -7594618 - AluSg SINE Alu -17 293 130 258 56 0 0 chr3 219929960 219929996 -7594582 + (TTTG)n Simple_repeat Simple_repeat 1 36 0 2057 58 40 18 chr3 219929996 219930270 -7594308 - AluY SINE Alu -31 280 1 2094 124 0 17 chr3 219930270 219930404 -7594174 - AluSg SINE Alu -178 132 1 192 336 34 25 chr3 219931146 219931265 -7593313 + L2 LINE L2 2869 2988 -284 21 89 0 0 chr3 219932664 219932720 -7591858 + AT_rich Low_complexity Low_complexity 1 56 0 200 339 70 0 chr3 219932964 219933079 -7591499 - MIR3 SINE MIR -3 205 83 234 298 157 0 chr3 219934804 219934925 -7589653 - MIR3 SINE MIR -3 205 66 1168 133 0 0 chr3 219935524 219935689 -7588889 + L1PA13 LINE L1 5917 6084 -79 207 0 0 0 chr3 219935689 219935712 -7588866 + (CAAA)n Simple_repeat Simple_repeat 2 24 0 1168 133 0 0 chr3 219935712 219935726 -7588852 + L1PA13 LINE L1 6083 6096 -67 1678 133 14 18 chr3 219935726 219936005 -7588573 + AluSx SINE Alu 21 298 -14 878 204 0 0 chr3 219936007 219936159 -7588419 + AluJo/FRAM SINE Alu 131 282 -30 395 237 149 18 chr3 219936198 219936312 -7588266 + MER45A DNA AcHobo 1 129 -49 435 146 0 0 chr3 219936598 219936680 -7587898 + L1PA13 LINE L1 6080 6161 -2 461 328 52 59 chr3 219936822 219937130 -7587448 + L1ME2 LINE L1 5328 5637 -527 2728 193 30 43 chr3 219937130 219937634 -7586944 + MLT2B3 LTR ERVL 1 499 -55 566 108 0 11 chr3 219937634 219937727 -7586851 + (TCTA)n Simple_repeat Simple_repeat 2 93 0 2728 193 30 43 chr3 219937727 219937783 -7586795 + MLT2B3 LTR ERVL 499 554 0 461 328 52 59 chr3 219937783 219938140 -7586438 + L1ME2 LINE L1 5637 5998 -166 327 252 379 0 chr3 219938279 219938485 -7586093 - L3 LINE CR1 -242 1335 1052 368 157 0 50 chr3 219939466 219939568 -7585010 + FLAM_A SINE Alu 2 133 0 2369 149 46 9 chr3 219939573 219940010 -7584568 + L1PA15 LINE L1 5706 6158 -7 299 333 164 22 chr3 219940274 219940718 -7583860 + L2 LINE L2 1815 2321 -993 29 0 0 0 chr3 219940718 219940747 -7583831 + AT_rich Low_complexity Low_complexity 1 29 0 571 150 42 8 chr3 219940751 219940871 -7583707 - L1MA8 LINE L1 -5 6286 6163 2299 142 0 3 chr3 219940871 219941237 -7583341 - L1PA15 LINE L1 -4 6161 5797 2959 119 16 61 chr3 219941239 219941678 -7582900 - L1MA6 LINE L1 -233 6067 5657 207 0 0 0 chr3 219941678 219941701 -7582877 + (CA)n Simple_repeat Simple_repeat 2 24 0 2959 119 16 61 chr3 219941701 219941822 -7582756 - L1MA6 LINE L1 -643 5657 5532 257 336 75 48 chr3 219941850 219942142 -7582436 + L2 LINE L2 2288 2587 -727 2201 42 0 15 chr3 219942438 219942703 -7581875 + AluY SINE Alu 36 296 -15 349 356 37 18 chr3 219943463 219943626 -7580952 - MIR SINE MIR -78 184 19 23 0 0 0 chr3 219943954 219943977 -7580601 + AT_rich Low_complexity Low_complexity 1 23 0 198 0 0 0 chr3 219944181 219944203 -7580375 + (T)n Simple_repeat Simple_repeat 1 22 0 234 240 20 30 chr3 219944489 219944589 -7579989 + (TATTG)n Simple_repeat Simple_repeat 2 100 0 228 356 52 81 chr3 219944940 219945249 -7579329 + L2 LINE L2 2892 3191 -81 2255 129 28 6 chr3 219946783 219947139 -7577439 - THE1B LTR MaLR 0 364 1 21 57 0 0 chr3 219947140 219947175 -7577403 + AT_rich Low_complexity Low_complexity 1 35 0 680 204 138 12 chr3 219947308 219947475 -7577103 + MER5A DNA MER1_type 1 188 -1 22 35 0 0 chr3 219948949 219948978 -7575600 + AT_rich Low_complexity Low_complexity 1 29 0 1154 261 146 37 chr3 219949266 219950444 -7574134 - L1ME3A LINE L1 -9 6161 4836 226 127 52 46 chr3 219950462 219950635 -7573943 + (TATAA)n Simple_repeat Simple_repeat 1 174 0 600 265 66 33 chr3 219950680 219951330 -7573248 - L1ME3A LINE L1 -1386 4760 4052 1593 103 131 0 chr3 219951377 219951629 -7572949 + AluSx SINE Alu 1 285 -17 1462 196 10 27 chr3 219952159 219952455 -7572123 + AluJo SINE Alu 1 291 -21 21 0 0 0 chr3 219953119 219953140 -7571438 + AT_rich Low_complexity Low_complexity 1 21 0 1508 153 75 11 chr3 219953177 219953506 -7571072 + L1MB7 LINE L1 5222 5569 -615 694 211 39 0 chr3 219953507 219953663 -7570915 + L1MB7 LINE L1 5982 6143 -41 329 390 99 34 chr3 219955080 219955372 -7569206 + L2 LINE L2 2924 3234 -38 243 184 0 0 chr3 219956338 219956387 -7568191 + L1MA8 LINE L1 5745 5793 -507 400 104 31 21 chr3 219956391 219956487 -7568091 + (TA)n Simple_repeat Simple_repeat 1 97 0 1238 180 27 141 chr3 219956487 219956898 -7567680 + MLT1A1 LTR MaLR 2 365 0 1411 123 16 40 chr3 219956898 219957149 -7567429 + L1MA8 LINE L1 5786 6030 -261 508 198 57 9 chr3 219958459 219958565 -7566013 + MER5A DNA MER1_type 79 189 0 2009 130 7 0 chr3 219959250 219959562 -7565016 - AluSx SINE Alu 0 314 1 2025 100 20 23 chr3 219959754 219960053 -7564525 - AluSx SINE Alu -14 298 1 2210 118 3 0 chr3 219960053 219960357 -7564221 - AluSq SINE Alu -8 305 1 19331 168 23 17 chr3 219961112 219965677 -7558901 + L1MA3 LINE L1 330 4968 -2756 1801 140 4 14 chr3 219965677 219965955 -7558623 + AluSg SINE Alu 1 275 -35 19331 168 23 17 chr3 219965955 219968729 -7555849 + L1MA3 LINE L1 4968 7723 -1 1583 189 6 9 chr3 219968718 219969035 -7555543 + L1MB3 LINE L1 5478 5793 -390 * 195 42 0 0 chr3 219969101 219969125 -7555453 + (TA)n Simple_repeat Simple_repeat 1 24 0 888 161 27 0 chr3 219969125 219969274 -7555304 + L1MB3 LINE L1 5792 5944 -239 1022 221 130 31 chr3 219969274 219969627 -7554951 + MLT1C LTR MaLR 28 415 -52 243 0 0 0 chr3 219969644 219969671 -7554907 + (T)n Simple_repeat Simple_repeat 1 27 0 1272 160 4 4 chr3 219969696 219969927 -7554651 + L1MB3 LINE L1 5953 6183 0 438 190 33 98 chr3 219970264 219970448 -7554130 + L1 LINE L1 5179 5350 -796 188 67 33 0 chr3 219970485 219970515 -7554063 + (TCTA)n Simple_repeat Simple_repeat 4 34 0 2497 51 3 10 chr3 219971756 219972069 -7552509 + AluY SINE Alu 1 311 0 394 321 83 36 chr3 219972793 219973095 -7551483 + LTR16C LTR ERVL 167 482 -9 204 315 72 27 chr3 219973100 219973211 -7551367 + L2 LINE L2 2687 2802 -512 194 303 187 7 chr3 219973478 219973633 -7550945 + L2 LINE L2 3129 3311 -2 16177 179 25 43 chr3 219974658 219978687 -7545891 + L1P4 LINE L1 1706 5638 -523 1149 116 6 0 chr3 219978757 219978929 -7545649 + L1PA13 LINE L1 5990 6162 -1 3495 272 36 12 chr3 219978935 219980316 -7544262 + L1M4 LINE L1 2205 3618 -2528 401 326 64 9 chr3 219980327 219980545 -7544033 + L1ME LINE L1 737 966 -5104 388 435 35 6 chr3 219980598 219980911 -7543667 + L1ME LINE L1 289 610 -5953 432 248 74 60 chr3 219981297 219981616 -7542962 + L1ME LINE L1 1201 1421 -4859 707 167 83 0 chr3 219981616 219981748 -7542830 + L1PA16 LINE L1 6008 6150 -16 291 283 20 20 chr3 219981842 219981994 -7542584 + L1ME LINE L1 1729 1880 -4683 4581 142 5 5 chr3 219981996 219982961 -7541617 + L1MA3 LINE L1 5007 5972 -333 350 288 3 37 chr3 219983077 219983262 -7541316 + G-rich Low_complexity Low_complexity 1 204 -116 227 30 0 30 chr3 219983262 219983295 -7541283 + (CGGGGG)n Simple_repeat Simple_repeat 3 34 0 350 288 3 37 chr3 219983295 219983409 -7541169 + G-rich Low_complexity Low_complexity 204 320 0 42 0 0 0 chr3 219983501 219983543 -7541035 + GC_rich Low_complexity Low_complexity 1 42 0 4391 126 1 6 chr3 219983638 219984339 -7540239 + L1MA3 LINE L1 5608 6305 0 21 0 0 0 chr3 219984425 219984446 -7540132 + AT_rich Low_complexity Low_complexity 1 21 0 2169 88 0 20 chr3 219984456 219984795 -7539783 + AluY SINE Alu 1 333 0 1389 31 0 0 chr3 219985012 219985173 -7539405 + AluY SINE Alu 150 310 -1 2245 96 10 0 chr3 219985200 219985492 -7539086 + AluSp SINE Alu 7 301 -12 696 274 96 56 chr3 219985739 219986548 -7538030 + L1ME LINE L1 2165 2978 -3404 2148 111 0 3 chr3 219986569 219986866 -7537712 + AluSc SINE Alu 1 296 -13 238 267 14 55 chr3 219986965 219987111 -7537467 + L1ME LINE L1 5427 5566 -816 462 260 133 70 chr3 219987137 219987509 -7537069 + L1ME LINE L1 5555 5964 -442 29803 102 10 60 chr3 219988135 219994625 -7529953 + L1PA7 LINE L1 4 6480 0 264 308 131 25 chr3 219994929 219995166 -7529412 - Charlie8 DNA MER1_type -2142 275 14 1979 90 90 0 chr3 219995511 219995790 -7528788 - AluSg SINE Alu -6 304 1 13102 150 33 8 chr3 219995943 219996088 -7528490 - Tigger1 DNA MER2_type 0 2418 2278 2339 83 0 13 chr3 219996088 219996389 -7528189 + AluY SINE Alu 14 310 -1 13102 150 33 8 chr3 219996389 219998603 -7525975 - Tigger1 DNA MER2_type -140 2278 1 347 227 80 23 chr3 219999553 219999641 -7524937 - MER45 DNA AcHobo -1488 93 1 1640 182 0 26 chr3 219999662 219999964 -7524614 - AluJo SINE Alu -16 296 3 180 0 0 0 chr3 220000314 220000334 -7524244 + (TG)n Simple_repeat Simple_repeat 2 21 0 746 304 118 53 chr3 220001613 220002080 -7522498 - L2 LINE L2 -261 3052 2568 1558 344 128 21 chr3 220002080 220003154 -7521424 - L2 LINE L2 -1747 1567 380 23 0 0 0 chr3 220004005 220004028 -7520550 + AT_rich Low_complexity Low_complexity 1 23 0 26 50 0 0 chr3 220004119 220004159 -7520419 + AT_rich Low_complexity Low_complexity 1 40 0 27 0 0 0 chr3 220004349 220004376 -7520202 + AT_rich Low_complexity Low_complexity 1 27 0 34 79 0 0 chr3 220004410 220004486 -7520092 + AT_rich Low_complexity Low_complexity 1 76 0 371 287 57 0 chr3 220005559 220005681 -7518897 - MIR3 SINE MIR -38 170 42 2048 126 0 25 chr3 220005740 220006115 -7518463 + AluSx SINE Alu 1 367 0 294 50 0 0 chr3 220006309 220006349 -7518229 + (TA)n Simple_repeat Simple_repeat 1 40 0 1040 283 119 26 chr3 220006507 220007134 -7517444 - L1M2b LINE L1 -5767 1442 740 2033 91 7 47 chr3 220107960 220108280 -7416298 + AluSx SINE Alu 1 308 0 319 303 101 0 chr3 220108664 220108773 -7415805 + MER77 LTR ERV1 82 201 -404 * 792 264 73 119 chr3 220108742 220109382 -7415196 + MER21B LTR ERV1 98 708 -155 485 294 130 0 chr3 220109625 220109802 -7414776 - MIR SINE MIR -5 257 58 1486 254 11 11 chr3 220110054 220110409 -7414169 - MER4D LTR ERV1 0 903 549 1817 126 15 0 chr3 220110466 220110737 -7413841 - MER49 LTR ERV1 -640 283 9 268 320 127 20 chr3 220110843 220110993 -7413585 + MIR SINE MIR 82 247 -15 2028 113 24 0 chr3 220111337 220111629 -7412949 + AluSp SINE Alu 1 299 -14 21 0 0 0 chr3 220112400 220112421 -7412157 + AT_rich Low_complexity Low_complexity 1 21 0 450 0 0 0 chr3 220112457 220112507 -7412071 + (TG)n Simple_repeat Simple_repeat 1 50 0 1852 219 60 18 chr3 220112906 220113357 -7411221 - MER89 LTR ERV1 -89 470 1 30 0 0 0 chr3 220113735 220113765 -7410813 + AT_rich Low_complexity Low_complexity 1 30 0 327 333 35 11 chr3 220114280 220114454 -7410124 - MIR SINE MIR 0 262 85 26 0 0 0 chr3 220114469 220114495 -7410083 + AT_rich Low_complexity Low_complexity 1 26 0 243 323 114 9 chr3 220114610 220114830 -7409748 + L2 LINE L2 1805 2047 -1267 180 184 0 26 chr3 220115369 220115407 -7409171 + MIR SINE MIR 115 151 -57 204 360 75 36 chr3 220115799 220116107 -7408471 + L2 LINE L2 2636 2955 -359 589 290 112 22 chr3 220116135 220116411 -7408167 + L2 LINE L2 3012 3312 -1 21 0 0 0 chr3 220117906 220117927 -7406651 + AT_rich Low_complexity Low_complexity 1 21 0 321 273 67 20 chr3 220118451 220118601 -7405977 - L1MC4 LINE L1 -710 7332 7176 411 277 59 0 chr3 220119110 220119211 -7405367 + MER81 DNA DNA 8 114 0 331 336 25 0 chr3 220119811 220119930 -7404648 + MIR3 SINE MIR 36 157 -51 265 295 0 0 chr3 220120046 220120125 -7404453 + L1ME LINE L1 5496 5574 -547 420 300 220 5 chr3 220120277 220120477 -7404101 - MIR SINE MIR -13 249 7 454 261 130 42 chr3 220121250 220121511 -7403067 - L1MC5 LINE L1 -54 7907 7624 607 93 0 0 chr3 220121511 220121597 -7402981 - Alu SINE Alu -3 309 224 251 345 18 0 chr3 220121821 220121934 -7402644 - L1MC4a LINE L1 -415 7393 7279 880 227 97 29 chr3 220122413 220122513 -7402065 + L2 LINE L2 2410 2502 -812 2231 105 0 19 chr3 220122513 220122826 -7401752 - AluSx SINE Alu -5 307 1 880 227 97 29 chr3 220122826 220123003 -7401575 + L2 LINE L2 2502 2706 -608 618 192 40 0 chr3 220123003 220123128 -7401450 - MER4D LTR ERV1 0 903 774 491 199 55 55 chr3 220123134 220123280 -7401298 - AluJb SINE Alu -59 253 108 1312 159 0 17 chr3 220123527 220123760 -7400818 + AluSx SINE Alu 47 275 -37 275 70 0 23 chr3 220123763 220123806 -7400772 + (TAAA)n Simple_repeat Simple_repeat 2 43 0 608 168 35 9 chr3 220124565 220124678 -7399900 - MLT1C LTR MaLR -2 465 350 529 256 70 1 chr3 220125183 220125315 -7399263 - MIR SINE MIR -36 172 33 2118 83 11 4 chr3 220125383 220125685 -7398893 - AluY SINE Alu 0 304 1 1968 82 7 4 chr3 220126134 220126404 -7398174 - AluY SINE Alu -2 309 39 546 234 42 48 chr3 220127770 220127937 -7396641 - MIR SINE MIR -13 249 84 201 241 51 25 chr3 220127934 220128013 -7396565 - L2 LINE L2 -84 3229 3149 * 233 271 24 47 chr3 220128381 220128466 -7396112 - L2 LINE L2 -3135 179 97 239 91 0 0 chr3 220128492 220128525 -7396053 + L2 LINE L2 3190 3222 -91 191 86 0 29 chr3 220128594 220128629 -7395949 + (TGAA)n Simple_repeat Simple_repeat 1 34 0 699 156 37 15 chr3 220129439 220129574 -7395004 - MLT1A1 LTR MaLR 0 365 228 347 329 36 14 chr3 220130002 220130142 -7394436 + MIR SINE MIR 93 235 -27 401 286 120 45 chr3 220130535 220130801 -7393777 + L3 LINE CR1 1186 1471 -106 26 0 0 0 chr3 220131977 220132003 -7392575 + AT_rich Low_complexity Low_complexity 1 26 0 2256 80 0 3 chr3 220133802 220134089 -7390489 + AluY SINE Alu 5 290 -21 2202 83 28 0 chr3 220134125 220134415 -7390163 + AluSg SINE Alu 1 298 -12 2007 53 57 11 chr3 220134580 220134844 -7389734 + AluY SINE Alu 28 303 -8 451 229 37 18 chr3 220134844 220134953 -7389625 + MIR SINE MIR 150 260 -2 296 334 108 71 chr3 220134972 220135493 -7389085 + L2 LINE L2 2720 3254 -18 22 0 0 0 chr3 220136319 220136341 -7388237 + AT_rich Low_complexity Low_complexity 1 22 0 21 82 0 0 chr3 220136690 220136739 -7387839 + AT_rich Low_complexity Low_complexity 1 49 0 502 131 37 0 chr3 220137264 220137354 -7387224 - MER51A LTR ERV1 -81 553 441 1028 136 0 0 chr3 220137548 220137688 -7386890 - AluSg/x SINE Alu -40 270 131 194 271 157 0 chr3 220137880 220137950 -7386628 + MIR SINE MIR 52 132 -130 1591 99 0 0 chr3 220139006 220139208 -7385370 - AluSc SINE Alu -107 202 1 1072 222 64 92 chr3 220139382 220139850 -7384728 - LTR16A1 LTR ERVL 0 457 3 863 69 121 0 chr3 220141733 220141849 -7382729 - AluSg/x SINE Alu -18 292 163 355 256 3 0 chr3 220142153 220142261 -7382317 - L1MC/D LINE L1 -440 5681 5604 763 136 0 43 chr3 220143980 220144120 -7380458 - FLAM_C SINE Alu -4 139 6 400 353 153 0 chr3 220145244 220145414 -7379164 - MIR SINE MIR -44 218 23 1443 187 4 29 chr3 220146314 220146592 -7377986 + AluJo SINE Alu 5 275 -37 192 40 0 0 chr3 220146608 220146633 -7377945 + (GA)n Simple_repeat Simple_repeat 2 26 0 475 287 205 8 chr3 220147696 220147964 -7376614 + L2 LINE L2 1629 1949 -1365 1214 143 40 13 chr3 220147966 220148190 -7376388 - L1MB2 LINE L1 -7 6164 5935 2116 108 0 7 chr3 220148191 220148486 -7376092 - AluSx SINE Alu -19 293 1 378 145 0 26 chr3 220148529 220148605 -7375973 - L1MB2 LINE L1 -226 5945 5872 182 274 143 12 chr3 220149780 220149864 -7374714 + L2 LINE L2 3219 3313 0 298 125 0 0 chr3 220150697 220150745 -7373833 - MER2 DNA MER2_type -139 206 159 304 302 164 8 chr3 220152212 220152385 -7372193 + MIR SINE MIR 14 213 -49 21 0 0 0 chr3 220152569 220152590 -7371988 + AT_rich Low_complexity Low_complexity 1 21 0 1438 169 43 110 chr3 220153562 220153981 -7370597 + MLT1B LTR MaLR 1 396 0 1675 146 60 0 chr3 220154387 220154680 -7369898 + AluJb SINE Alu 1 309 0 324 275 0 0 chr3 220154726 220154806 -7369772 - MER20 DNA MER1_type -19 200 121 333 0 0 0 chr3 220155117 220155154 -7369424 + (TA)n Simple_repeat Simple_repeat 2 38 0 272 304 87 0 chr3 220155466 220155558 -7369020 - MIR3 SINE MIR -31 177 78 23 33 0 0 chr3 220155821 220155851 -7368727 + AT_rich Low_complexity Low_complexity 1 30 0 301 251 25 83 chr3 220156578 220156753 -7367825 + L2 LINE L2 2788 2953 -319 726 270 0 56 chr3 220156855 220157070 -7367508 + L2 LINE L2 3111 3313 0 2336 67 3 0 chr3 220158239 220158564 -7366014 + AluSp SINE Alu 1 326 0 276 57 19 38 chr3 220159664 220159717 -7364861 + (TTTTC)n Simple_repeat Simple_repeat 3 54 0 1709 134 17 30 chr3 220159719 220160018 -7364560 - AluSg SINE Alu -2 308 14 21 89 0 0 chr3 220160827 220160883 -7363695 + AT_rich Low_complexity Low_complexity 1 56 0 330 274 92 39 chr3 220161181 220161334 -7363244 - MIR SINE MIR 0 262 102 1865 118 0 12 chr3 220161338 220161593 -7362985 + AluSx SINE Alu 4 255 -57 269 50 0 25 chr3 220161605 220161645 -7362933 + (CAAA)n Simple_repeat Simple_repeat 2 40 0 42421 36 26 1 chr3 220162275 220167506 -7357072 - L1P LINE L1 -775 5371 13 473 316 130 5 chr3 220170012 220170227 -7354351 - MIR SINE MIR 0 262 21 * 514 308 26 53 chr3 220170219 220170485 -7354093 + L2 LINE L2 1142 1400 -1914 937 159 25 22 chr3 220170487 220170843 -7353735 + CT-rich Low_complexity Low_complexity 1 357 0 1433 302 87 27 chr3 220170844 220171659 -7352919 + L2 LINE L2 1278 2141 -1173 830 227 9 42 chr3 220171852 220172068 -7352510 + MER20 DNA MER1_type 1 209 -10 324 0 0 0 chr3 220172121 220172157 -7352421 + (TG)n Simple_repeat Simple_repeat 2 37 0 598 304 211 24 chr3 220172182 220172924 -7351654 + L2 LINE L2 2424 3309 -4 720 261 50 6 chr3 220173334 220173514 -7351064 + MER5A DNA MER1_type 2 189 0 279 0 0 0 chr3 220173683 220173714 -7350864 + (CA)n Simple_repeat Simple_repeat 2 32 0 312 310 75 40 chr3 220173728 220173902 -7350676 + MIR SINE MIR 12 191 -71 384 188 0 0 chr3 220175304 220175373 -7349205 + MER41B LTR ERV1 478 546 -89 284 312 35 46 chr3 220175739 220175912 -7348666 - MER5A DNA MER1_type -7 182 12 291 28 0 0 chr3 220175996 220176032 -7348546 + (TG)n Simple_repeat Simple_repeat 2 37 0 1700 173 0 11 chr3 220177118 220177429 -7347149 - AluSx SINE Alu 0 311 4 207 298 35 0 chr3 220177650 220177707 -7346871 - MIR3 SINE MIR -12 196 138 476 298 192 5 chr3 220177985 220178193 -7346385 + MIR SINE MIR 2 248 -14 771 311 20 8 chr3 220178677 220178921 -7345657 + MIR SINE MIR 11 257 -5 341 245 92 87 chr3 220179353 220179549 -7345029 + MLT1J LTR MaLR 95 291 -220 231 325 47 6 chr3 220179639 220179808 -7344770 + MLT1J LTR MaLR 336 511 0 342 0 0 0 chr3 220179909 220179947 -7344631 + (TA)n Simple_repeat Simple_repeat 1 38 0 2226 92 31 0 chr3 220179950 220180242 -7344336 - AluSg SINE Alu -9 301 1 2244 113 0 0 chr3 220181237 220181538 -7343040 + AluSx SINE Alu 1 301 -11 922 123 22 0 chr3 220182342 220182480 -7342098 + AluSg/x SINE Alu 164 304 -8 240 363 72 47 chr3 220183482 220183675 -7340903 - MIR3 SINE MIR -8 200 3 219 69 0 0 chr3 220184056 220184085 -7340493 + (TC)n Simple_repeat Simple_repeat 1 29 0 772 184 0 22 chr3 220184089 220184225 -7340353 - FLAM_A SINE Alu 0 133 1 1725 168 4 0 chr3 220184291 220184559 -7340019 + AluSx SINE Alu 5 273 -39 22 35 0 0 chr3 220184659 220184688 -7339890 + AT_rich Low_complexity Low_complexity 1 29 0 3192 182 48 29 chr3 220184758 220185484 -7339094 + L1MB7 LINE L1 5429 6168 -16 268 337 40 10 chr3 220186933 220187034 -7337544 + MIR SINE MIR 42 145 -63 373 289 42 74 chr3 220189285 220189475 -7335103 + MIR SINE MIR 32 215 -47 719 316 64 14 chr3 220189833 220190130 -7334448 + L2 LINE L2 2862 3173 -140 185 374 32 24 chr3 220190279 220190402 -7334176 + MIR3 SINE MIR 85 208 0 21 0 0 0 chr3 220190491 220190512 -7334066 + AT_rich Low_complexity Low_complexity 1 21 0 2110 103 10 7 chr3 220190686 220190976 -7333602 - AluSx SINE Alu -19 293 3 378 239 63 63 chr3 220191644 220191730 -7332848 + MIR SINE MIR 86 174 -88 2005 145 7 0 chr3 220191730 220192026 -7332552 - AluSx SINE Alu -14 298 1 378 239 63 63 chr3 220192026 220192081 -7332497 + MIR SINE MIR 173 227 -35 414 377 67 35 chr3 220192874 220193304 -7331274 + L1MEc LINE L1 34 477 -5919 372 59 0 0 chr3 220193529 220193580 -7330998 + (CA)n Simple_repeat Simple_repeat 2 52 0 1226 158 0 5 chr3 220193806 220194002 -7330576 - AluJb SINE Alu -8 304 110 17154 27 0 1 chr3 220194102 220196903 -7327675 + L1PA2 LINE L1 3356 6153 -2 442 235 0 18 chr3 220197261 220197383 -7327195 - MER33 DNA MER1_type -259 65 1 3719 164 25 8 chr3 220197585 220198291 -7326287 - L1MB3 LINE L1 -2 6181 5464 256 289 91 63 chr3 220198463 220198686 -7325892 + MIR SINE MIR 32 259 -3 2372 78 3 0 chr3 220199650 220199946 -7324632 + AluY SINE Alu 1 297 -14 21 0 0 0 chr3 220200277 220200298 -7324280 + AT_rich Low_complexity Low_complexity 1 21 0 443 293 167 0 chr3 220200626 220200776 -7323802 + MER5A DNA MER1_type 9 183 -6 204 349 72 0 chr3 220201045 220201128 -7323450 - MIR SINE MIR -161 101 13 242 255 0 0 chr3 220202217 220202282 -7322296 + C-rich Low_complexity Low_complexity 1 65 0 186 133 0 0 chr3 220202967 220202997 -7321581 + (T)n Simple_repeat Simple_repeat 1 30 0 234 0 0 0 chr3 220205065 220205091 -7319487 + (T)n Simple_repeat Simple_repeat 1 26 0 801 174 0 0 chr3 220207594 220207738 -7316840 - AluYb8 SINE Alu 0 318 175 307 220 79 113 chr3 220207907 220208084 -7316494 + HAL1 LINE L1 1427 1597 -910 250 245 0 0 chr3 220208099 220208148 -7316430 - MER2 DNA MER2_type -16 329 281 * 395 200 128 80 chr3 220208147 220208272 -7316306 + AluSp/q SINE Alu 171 262 -41 371 159 47 19 chr3 220208274 220208381 -7316197 + GA-rich Low_complexity Low_complexity 3 112 0 5030 174 40 21 chr3 220208387 220209492 -7315086 + L1MA9 LINE L1 5188 6307 -5 1070 209 15 0 chr3 220209731 220209937 -7314641 - MER2 DNA MER2_type -135 210 2 705 299 164 36 chr3 220210948 220211393 -7313185 - L2 LINE L2 -6 3307 2806 841 178 70 35 chr3 220211413 220211671 -7312907 + MER33 DNA MER1_type 9 275 -49 1366 106 5 5 chr3 220211684 220211872 -7312706 + AluSx SINE Alu 1 188 -124 627 124 190 0 chr3 220212046 220212167 -7312411 + AluSc SINE Alu 165 308 -1 1396 277 80 18 chr3 220212231 220212679 -7311899 - L2 LINE L2 -514 2800 2325 24 67 0 0 chr3 220212690 220212735 -7311843 + AT_rich Low_complexity Low_complexity 1 45 0 321 318 21 31 chr3 220212826 220213018 -7311560 - L1ME LINE L1 -477 5644 5455 22 56 0 0 chr3 220213114 220213150 -7311428 + AT_rich Low_complexity Low_complexity 1 36 0 525 331 48 4 chr3 220213991 220214223 -7310355 + MIR SINE MIR 18 257 -5 276 30 0 0 chr3 220214805 220214838 -7309740 + (TG)n Simple_repeat Simple_repeat 1 33 0 31 0 0 0 chr3 220215014 220215045 -7309533 + AT_rich Low_complexity Low_complexity 1 31 0 4954 248 57 60 chr3 220215312 220217015 -7307563 - L1M4c LINE L1 -3441 3203 1308 2077 154 3 0 chr3 220217015 220217321 -7307257 - AluSx SINE Alu 0 312 6 4954 248 57 60 chr3 220217321 220218623 -7305955 - L1M4c LINE L1 -5336 1308 4 3000 88 0 0 chr3 220218634 220219041 -7305537 - L1PA13 LINE L1 -3 6160 5754 2531 97 6 11 chr3 220219054 220219416 -7305162 - L1PB1 LINE L1 -1 6150 5791 815 173 0 0 chr3 220219434 220219561 -7305017 - AluJb SINE Alu -180 132 6 1466 178 42 4 chr3 220219571 220219943 -7304635 - L1M3 LINE L1 -619 5561 5175 623 264 31 28 chr3 220219964 220220307 -7304271 - L1ME LINE L1 -5239 844 501 2249 102 3 0 chr3 220221975 220222268 -7302310 - AluSg SINE Alu -14 296 3 347 308 90 8 chr3 220222455 220222588 -7301990 + MIR3 SINE MIR 51 194 -14 230 324 35 14 chr3 220223015 220223160 -7301418 - LTR67 LTR ERVL -3 554 407 321 304 133 13 chr3 220223291 220223449 -7301129 - HERVL LTR ERVL -1406 4248 4072 275 321 0 0 chr3 220223547 220223653 -7300925 - HERVL LTR ERVL -1789 3975 3870 1649 234 78 23 chr3 220223674 220224282 -7300296 - L1MC/D LINE L1 -453 5789 5149 2336 56 0 68 chr3 220224282 220224604 -7299974 + AluY SINE Alu 1 300 -11 1649 234 78 23 chr3 220224604 220224710 -7299868 - L1MC/D LINE L1 -1093 5149 5050 251 296 196 45 chr3 220224842 220225041 -7299537 + MIR SINE MIR 20 248 -14 337 283 70 30 chr3 220225317 220225689 -7298889 + MLT1J2 LTR MaLR 39 450 0 685 152 0 0 chr3 220225710 220225815 -7298763 - AluSx SINE Alu -73 239 135 481 165 0 55 chr3 220225817 220225908 -7298670 - AluSx SINE Alu -225 88 3 26 107 0 0 chr3 220226042 220226145 -7298433 + AT_rich Low_complexity Low_complexity 1 103 0 1177 152 5 55 chr3 220226521 220226738 -7297840 - AluSg/x SINE Alu -22 290 85 329 305 37 65 chr3 220228923 220229106 -7295472 + MIR SINE MIR 9 182 -42 2403 123 63 19 chr3 220229948 220230362 -7294216 - MSTB1 LTR MaLR 0 432 1 1502 141 4 16 chr3 220230984 220231239 -7293339 - L1PB1 LINE L1 -5 6146 5895 8927 166 36 17 chr3 220231239 220231751 -7292827 - L1PBa LINE L1 -2133 4729 4228 6482 125 17 28 chr3 220231751 220232830 -7291748 + MER11C LTR ERVK 1 1067 -4 8927 166 36 17 chr3 220232830 220234161 -7290417 - L1PBa LINE L1 -2634 4228 2924 2288 97 7 0 chr3 220234161 220234460 -7290118 - AluY SINE Alu -10 301 1 8927 166 36 17 chr3 220234460 220235951 -7288627 - L1PBa LINE L1 -3938 2924 1322 4807 198 85 7 chr3 220235960 220237034 -7287544 - L1PBa LINE L1 -5700 1163 6 2430 4 0 0 chr3 220237224 220237486 -7287092 - AluYb8 SINE Alu -56 262 1 214 280 53 13 chr3 220238108 220238183 -7286395 - L2 LINE L2 -4 3268 3191 2452 59 7 0 chr3 220238425 220238731 -7285847 - AluY SINE Alu 0 311 4 260 294 15 0 chr3 220239653 220239721 -7284857 - MLT1J LTR MaLR -204 307 239 494 291 0 17 chr3 220240874 220240991 -7283587 - MER5B DNA MER1_type 0 178 64 1904 234 102 8 chr3 220242302 220242730 -7281848 + MLT2B1 LTR ERVL 6 483 -37 297 75 0 0 chr3 220242730 220242770 -7281808 + (TG)n Simple_repeat Simple_repeat 2 41 0 1904 234 102 8 chr3 220242770 220242812 -7281766 + MLT2B1 LTR ERVL 483 520 0 240 286 48 0 chr3 220243100 220243163 -7281415 + MIR SINE MIR 81 146 -62 2395 224 125 66 chr3 220243185 220243628 -7280950 - L1MDb LINE L1 -3943 2463 2047 1889 145 17 0 chr3 220243628 220243925 -7280653 - AluSx SINE Alu -10 302 1 2395 224 125 66 chr3 220243925 220245072 -7279506 - L1MDb LINE L1 -4359 2047 755 1715 178 36 18 chr3 220245421 220245753 -7278825 + MER44D DNA MER2_type 1 608 -1 1116 204 51 16 chr3 220247810 220247998 -7276580 - MER33 DNA MER1_type -2261 324 119 2059 120 0 19 chr3 220247998 220248306 -7276272 - AluSx SINE Alu -10 302 1 1116 204 51 16 chr3 220248306 220248430 -7276148 - MER33 DNA MER1_type -2466 119 1 182 338 118 0 chr3 220248783 220248851 -7275727 + L2 LINE L2 2987 3062 -210 198 175 0 0 chr3 220248967 220249007 -7275571 + L2 LINE L2 3271 3310 -3 252 290 92 82 chr3 220249251 220249644 -7274934 + L1ME2 LINE L1 5530 5928 -236 203 213 0 16 chr3 220250011 220250072 -7274506 + CT-rich Low_complexity Low_complexity 4 63 0 22 0 0 0 chr3 220250815 220250837 -7273741 + AT_rich Low_complexity Low_complexity 1 22 0 846 295 76 13 chr3 220252193 220252734 -7271844 + MLT2E LTR ERVL 20 628 0 31 26 0 0 chr3 220254230 220254268 -7270310 + AT_rich Low_complexity Low_complexity 1 38 0 23 0 0 0 chr3 220254341 220254364 -7270214 + AT_rich Low_complexity Low_complexity 1 23 0 312 311 28 92 chr3 220255276 220255636 -7268942 + L2 LINE L2 2516 2852 -462 272 229 43 0 chr3 220255610 220255680 -7268898 + L2 LINE L2 3230 3302 -11 * 1425 219 42 0 chr3 220255680 220255963 -7268615 - AluJo SINE Alu -15 297 3 217 234 0 0 chr3 220255981 220256028 -7268550 + (TGAA)n Simple_repeat Simple_repeat 3 49 0 242 292 0 15 chr3 220257031 220257096 -7267482 + MIR3 SINE MIR 105 168 -40 202 200 0 29 chr3 220257475 220257545 -7267033 + (TTA)n Simple_repeat Simple_repeat 1 68 0 238 358 75 25 chr3 220257922 220258042 -7266536 + L2 LINE L2 3141 3266 -6 977 295 102 50 chr3 220258354 220259182 -7265396 - L2 LINE L2 0 3313 2438 1641 186 3 0 chr3 220259383 220259673 -7264905 + Tigger1 DNA MER2_type 1 291 -2127 723 256 76 88 chr3 220259738 220260145 -7264433 + LTR38 LTR ERV1 94 495 -61 11525 143 27 4 chr3 220260153 220262025 -7262553 + Tigger1 DNA MER2_type 459 2373 -45 1665 177 30 7 chr3 220262134 220262439 -7262139 + AluSx SINE Alu 1 312 0 4292 189 29 19 chr3 220262442 220263291 -7261287 - MER21B LTR ERV1 -4 859 2 270 0 0 0 chr3 220263406 220263436 -7261142 + (TA)n Simple_repeat Simple_repeat 1 30 0 218 0 70 23 chr3 220263473 220263516 -7261062 + (TA)n Simple_repeat Simple_repeat 2 46 0 379 261 36 97 chr3 220263605 220263800 -7260778 + L2 LINE L2 3118 3300 -13 829 146 8 0 chr3 220264263 220264393 -7260185 - AluJb SINE Alu -26 286 156 25 0 0 0 chr3 220265845 220265870 -7258708 + AT_rich Low_complexity Low_complexity 1 25 0 243 325 0 13 chr3 220266071 220266148 -7258430 - MIR SINE MIR -100 108 33 1696 218 51 13 chr3 220266597 220267046 -7257532 + MLT1C LTR MaLR 1 466 -1 508 299 164 0 chr3 220267828 220268042 -7256536 - MIR SINE MIR -6 256 8 216 0 0 0 chr3 220268419 220268443 -7256135 + (TG)n Simple_repeat Simple_repeat 2 25 0 21 0 0 0 chr3 220269244 220269265 -7255313 + AT_rich Low_complexity Low_complexity 1 21 0 240 289 58 58 chr3 220270109 220270213 -7254365 - L2 LINE L2 -16 3256 3153 1928 184 101 43 chr3 220271889 220272172 -7252406 - MER67D LTR ERV1 -1 513 189 1947 133 7 0 chr3 220272172 220272472 -7252106 - AluSx SINE Alu -10 302 1 1928 184 101 43 chr3 220272472 220272673 -7251905 - MER67D LTR ERV1 -325 189 1 269 393 27 7 chr3 220273487 220273637 -7250941 - MIR SINE MIR -50 212 60 22 0 0 0 chr3 220273787 220273809 -7250769 + AT_rich Low_complexity Low_complexity 1 22 0 246 299 34 17 chr3 220273988 220274001 -7250577 - L1MA10 LINE L1 -3 6331 6319 2694 245 86 3 chr3 220274001 220274747 -7249831 - L1ME1 LINE L1 -9 6226 5419 1710 231 64 114 chr3 220274769 220275735 -7248843 - L1ME1 LINE L1 -1328 4887 3970 687 272 94 39 chr3 220275781 220275864 -7248714 - L1ME1 LINE L1 -3569 2646 2569 1388 233 14 3 chr3 220275864 220276151 -7248427 - AluJo SINE Alu -22 290 1 687 272 94 39 chr3 220276151 220276482 -7248096 - L1ME1 LINE L1 -3646 2569 2209 464 267 40 7 chr3 220276489 220276639 -7247939 - L1ME1 LINE L1 -4542 1854 1700 1566 210 0 3 chr3 220276639 220276929 -7247649 + AluJo SINE Alu 1 289 -23 226 204 0 0 chr3 220276938 220276987 -7247591 - L1MD3 LINE L1 -1327 6668 6620 262 43 0 43 chr3 220277002 220277048 -7247530 + (TA)n Simple_repeat Simple_repeat 1 44 0 530 254 35 23 chr3 220277049 220277222 -7247356 - L1ME1 LINE L1 -4687 1709 1535 12492 186 46 24 chr3 220277251 220282436 -7242142 - L1PA15 LINE L1 0 7584 2111 762 157 0 183 chr3 220282436 220282671 -7241907 - 7SK RNA RNA 0 193 2 12492 186 46 24 chr3 220282671 220283529 -7241049 - L1PA15 LINE L1 -5473 2111 1274 5134 216 19 12 chr3 220283533 220283901 -7240677 - L1PA13 LINE L1 -4430 2367 2003 3948 38 23 2 chr3 220283901 220284381 -7240197 + LTR2B LTR ERV1 1 490 0 5134 216 19 12 chr3 220284381 220285175 -7239403 - L1PA13 LINE L1 -4794 2003 1187 1306 301 54 22 chr3 220285199 220286201 -7238377 - L1ME1 LINE L1 -4879 1517 484 280 278 63 40 chr3 220286427 220286553 -7238025 - L1ME1 LINE L1 -6161 235 107 290 291 73 0 chr3 220286890 220287000 -7237578 + MIR SINE MIR 72 189 -73 254 282 153 12 chr3 220287099 220287184 -7237394 - MIR SINE MIR -63 145 49 2610 277 74 24 chr3 220288133 220289411 -7235167 + L1MCb LINE L1 1 1386 -5148 273 57 0 0 chr3 220289411 220289446 -7235132 + (CAAAA)n Simple_repeat Simple_repeat 2 36 0 2610 277 74 24 chr3 220289446 220289760 -7234818 + L1MCb LINE L1 1386 1683 -4851 6962 203 71 55 chr3 220289766 220290264 -7234314 + L1MC3 LINE L1 5815 6304 -1481 2540 53 0 0 chr3 220290264 220290565 -7234013 - AluY SINE Alu -10 301 1 6962 203 71 55 chr3 220290565 220291321 -7233257 + L1MC3 LINE L1 6304 7190 -595 252 288 0 0 chr3 220291321 220291401 -7233177 + MLT1F1 LTR MaLR 46 125 -442 6962 203 71 55 chr3 220291401 220292007 -7232571 + L1MC3 LINE L1 7190 7785 0 1468 149 50 25 chr3 220292210 220292491 -7232087 + Charlie3 DNA MER1_type 2 289 -2421 * 11261 108 7 1 chr3 220292485 220294055 -7230523 + Charlie3 DNA MER1_type 1128 2706 -4 185 224 61 0 chr3 220295082 220295131 -7229447 + MIR SINE MIR 112 163 -99 190 241 13 114 chr3 220297609 220297688 -7226890 + MIR3 SINE MIR 129 199 -9 342 310 49 7 chr3 220297966 220298108 -7226470 + MIR SINE MIR 109 256 -6 2773 68 94 12 chr3 220298936 220299350 -7225228 + LTR7 LTR ERV1 1 448 -2 19951 100 61 23 chr3 220299352 220302522 -7222056 + HERVH LTR ERV1 1 3290 -4423 3513 81 8 4 chr3 220302521 220303013 -7221565 + HERVH LTR ERV1 3500 3993 -3720 * 4295 141 1 3 chr3 220303015 220303675 -7220903 + HERVH LTR ERV1 4488 5146 -2567 1375 129 18 5 chr3 220303679 220303896 -7220682 + HERVH LTR ERV1 5600 5819 -1894 * 2349 103 50 13 chr3 220303894 220304272 -7220306 + HERVH LTR ERV1 7322 7713 0 2517 85 99 14 chr3 220304272 220304685 -7219893 + LTR7 LTR ERV1 1 448 -2 214 300 0 0 chr3 220304772 220304822 -7219756 - MER5A DNA MER1_type 0 189 140 202 226 81 16 chr3 220305173 220305235 -7219343 + MER5B DNA MER1_type 1 66 -112 2087 240 83 45 chr3 220305281 220306536 -7218042 - L1MD3 LINE L1 -13 7982 6776 2420 147 5 3 chr3 220306536 220306910 -7217668 - THE1C LTR MaLR 0 375 1 2087 240 83 45 chr3 220306910 220308082 -7216496 - L1MD3 LINE L1 -1219 6776 5389 637 198 55 22 chr3 220308972 220309154 -7215424 + MER96B DNA MER1_type? 46 233 -184 547 338 92 6 chr3 220309190 220309518 -7215060 + LTR16A LTR ERVL 94 449 -1 200 214 24 0 chr3 220310301 220310343 -7214235 + CT-rich Low_complexity Low_complexity 2 44 0 197 366 22 60 chr3 220310817 220310951 -7213627 + MIR SINE MIR 28 156 -106 287 228 56 2 chr3 220311632 220311717 -7212861 - MIR SINE MIR -26 182 84 497 198 0 21 chr3 220312704 220312800 -7211778 - FRAM SINE Alu -13 163 70 677 236 18 18 chr3 220312849 220313014 -7211564 - MER20 DNA MER1_type -38 181 17 23 33 0 0 chr3 220313338 220313368 -7211210 + AT_rich Low_complexity Low_complexity 1 30 0 307 330 26 17 chr3 220313614 220313729 -7210849 + MIR3 SINE MIR 9 124 -84 680 258 6 0 chr3 220313906 220314073 -7210505 + FAM SINE Alu 1 168 -7 337 278 118 49 chr3 220314725 220314825 -7209753 - L1ME LINE L1 -306 5815 5723 2152 102 0 0 chr3 220314825 220315154 -7209424 + AluY SINE Alu 1 329 0 337 278 118 49 chr3 220315154 220315297 -7209281 - L1ME LINE L1 -398 5723 5554 468 296 63 32 chr3 220315304 220315493 -7209085 + MIR SINE MIR 2 196 -66 350 339 37 32 chr3 220316188 220316406 -7208172 - L1ME LINE L1 -2060 4086 3868 1123 146 5 0 chr3 220316487 220316686 -7207892 - L1MA4 LINE L1 -18 6282 6083 21 36 0 0 chr3 220316925 220316953 -7207625 + AT_rich Low_complexity Low_complexity 1 28 0 2180 115 3 0 chr3 220317119 220317415 -7207163 + AluSq SINE Alu 1 297 -16 1934 273 54 35 chr3 220318393 220318460 -7206118 + L1ME1 LINE L1 63 127 -6269 2082 134 3 0 chr3 220318460 220318758 -7205820 - AluSq SINE Alu -14 299 1 1934 273 54 35 chr3 220318758 220319539 -7205039 + L1ME1 LINE L1 127 927 -5469 1486 226 7 3 chr3 220319533 220319842 -7204736 + L1ME1 LINE L1 5396 5705 -530 * 339 243 33 3 chr3 220319837 220319948 -7204630 - L1ME LINE L1 -403 5761 5642 * 295 350 48 0 chr3 220319954 220320057 -7204521 + L2 LINE L2 3201 3308 -5 1163 236 26 65 chr3 220320087 220320515 -7204063 + L1ME1 LINE L1 5818 6228 -7 681 317 130 8 chr3 220320875 220321276 -7203302 - L1MCb LINE L1 -5595 450 1 2266 196 46 26 chr3 220321298 220321845 -7202733 + L1MC2 LINE L1 5779 6336 -8 383 293 85 41 chr3 220321898 220322168 -7202410 + L1ME3A LINE L1 4313 4594 -1552 1950 148 102 22 chr3 220322218 220322618 -7201960 - MSTB1 LTR MaLR 0 432 1 638 296 95 58 chr3 220322628 220323077 -7201501 + L1ME3A LINE L1 4719 5193 -953 1600 190 6 19 chr3 220323077 220323393 -7201185 + AluJb SINE Alu 1 312 0 638 296 95 58 chr3 220323393 220323480 -7201098 + L1ME3A LINE L1 5193 5275 -871 570 307 68 46 chr3 220323497 220324149 -7200429 + L1ME3A LINE L1 5289 5954 -216 277 164 41 41 chr3 220324608 220324681 -7199897 + L2 LINE L2 2184 2256 -1058 2079 248 90 23 chr3 220325356 220326422 -7198156 - L1ME1 LINE L1 -181 6054 4975 1378 276 68 57 chr3 220326394 220326950 -7197628 - L1ME1 LINE L1 -3633 2582 2034 * 2432 83 0 0 chr3 220326950 220327250 -7197328 - AluSg SINE Alu -10 300 1 1378 276 68 57 chr3 220327250 220327874 -7196704 - L1ME1 LINE L1 -4181 2034 1431 423 0 0 0 chr3 220327897 220327944 -7196634 + (TG)n Simple_repeat Simple_repeat 2 48 0 1763 178 18 9 chr3 220329632 220329970 -7194608 - MER61A LTR ERV1 -2 341 1 285 293 100 20 chr3 220330071 220330221 -7194357 - HAL1 LINE L1 -22 2485 2324 2109 110 7 3 chr3 220330226 220330525 -7194053 - AluSq SINE Alu -13 300 1 306 219 0 0 chr3 220330547 220330611 -7193967 + L1MC4 LINE L1 6640 6703 -1339 393 176 0 0 chr3 220330611 220330685 -7193893 + (TG)n Simple_repeat Simple_repeat 2 75 0 332 207 104 37 chr3 220330686 220330850 -7193728 - HAL1 LINE L1 -186 2321 2147 1529 293 52 27 chr3 220330891 220331566 -7193012 - HAL1 LINE L1 -1341 1166 475 1243 302 16 23 chr3 220331566 220332104 -7192474 + MLT2E LTR ERVL 15 625 -3 414 0 0 0 chr3 220332250 220332296 -7192282 + (CA)n Simple_repeat Simple_repeat 2 47 0 473 293 48 16 chr3 220332351 220332539 -7192039 - HAL1 LINE L1 -2260 247 54 198 191 0 0 chr3 220332781 220332823 -7191755 + CT-rich Low_complexity Low_complexity 1 42 0 24 0 0 0 chr3 220333450 220333474 -7191104 + AT_rich Low_complexity Low_complexity 1 24 0 3240 204 27 3 chr3 220333893 220334529 -7190049 - MER82 DNA MER2_type -1 652 2 186 359 30 60 chr3 220335276 220335443 -7189135 - L2 LINE L2 -602 2712 2551 415 338 66 46 chr3 220336086 220336530 -7188048 - LTR16A LTR ERVL 0 450 1 22 35 0 0 chr3 220337348 220337377 -7187201 + AT_rich Low_complexity Low_complexity 1 29 0 303 310 49 35 chr3 220338236 220338378 -7186200 + MLT1J LTR MaLR 35 178 -333 1139 306 85 13 chr3 220338537 220338997 -7185581 - L2 LINE L2 -617 2697 2205 324 338 71 20 chr3 220339271 220339567 -7185011 - L1MC5 LINE L1 -368 7593 7283 213 94 0 0 chr3 220339628 220339660 -7184918 + (CA)n Simple_repeat Simple_repeat 2 33 0 287 210 80 65 chr3 220339753 220339852 -7184726 - L1MC4 LINE L1 -805 7237 7134 2668 111 25 32 chr3 220339852 220340237 -7184341 + MSTA LTR MaLR 1 384 -44 2137 86 0 14 chr3 220340237 220340517 -7184061 - AluY SINE Alu -1 310 35 2668 111 25 32 chr3 220340517 220340562 -7184016 + MSTA LTR MaLR 384 428 0 287 210 80 65 chr3 220340562 220340600 -7183978 - L1MC4 LINE L1 -908 7134 7098 2236 125 0 0 chr3 220340802 220341106 -7183472 - AluSx SINE Alu -8 304 1 689 267 96 20 chr3 220341151 220341446 -7183132 - L1MC4 LINE L1 -926 6967 6558 188 265 17 86 chr3 220341866 220341983 -7182595 + L2 LINE L2 1846 1954 -1360 4964 129 40 2 chr3 220343674 220344528 -7180050 - L1MA3 LINE L1 -2 6303 5418 2584 221 20 22 chr3 220344859 220345412 -7179166 + MER68 LTR ERV1 1 552 -10 288 170 0 0 chr3 220345468 220345521 -7179057 + (CA)n Simple_repeat Simple_repeat 1 53 0 252 0 0 0 chr3 220345522 220345550 -7179028 + (GA)n Simple_repeat Simple_repeat 1 28 0 250 335 43 26 chr3 220345719 220345949 -7178629 - L1MCc LINE L1 -5069 1354 1121 413 305 26 79 chr3 220346342 220346722 -7177856 - L1MCc LINE L1 -5920 503 144 340 224 0 40 chr3 220346727 220346803 -7177775 - Tigger5 DNA MER2_type 0 2323 2251 273 270 0 14 chr3 220346818 220346892 -7177686 - Tigger5 DNA MER2_type 0 2323 2251 227 224 0 20 chr3 220346860 220346909 -7177669 - Tigger5 DNA MER2_type -2268 55 8 * 263 247 32 0 chr3 220346919 220347012 -7177566 - L1MCc LINE L1 -6286 137 42 1277 290 60 36 chr3 220347115 220347302 -7177276 - L1ME3A LINE L1 -221 5949 5768 4916 216 140 39 chr3 220347302 220348896 -7175682 + MER52A LTR ERV1 1 1755 0 1277 290 60 36 chr3 220348896 220349481 -7175097 - L1ME3A LINE L1 -402 5768 5158 224 314 29 0 chr3 220349735 220349805 -7174773 - MIR SINE MIR -101 107 36 186 191 0 0 chr3 220350123 220350165 -7174413 + A-rich Low_complexity Low_complexity 1 42 0 218 384 47 42 chr3 220350692 220351075 -7173503 + L2 LINE L2 2428 2812 -502 618 252 73 0 chr3 220351286 220351437 -7173141 - FAM SINE Alu -12 163 2 207 219 0 0 chr3 220352195 220352236 -7172342 + T-rich Low_complexity Low_complexity 1 41 0 189 381 42 17 chr3 220352379 220352497 -7172081 - MIR SINE MIR -108 154 34 2370 95 3 0 chr3 220355988 220356293 -7168285 - AluSp SINE Alu -7 306 1 231 342 19 71 chr3 220356296 220356451 -7168127 + L2 LINE L2 2925 3071 -201 9456 171 17 13 chr3 220357128 220359904 -7164674 - L1MA3 LINE L1 -31 7693 4910 1407 151 59 0 chr3 220359909 220360128 -7164450 - AluJb SINE Alu -80 232 1 3698 172 29 8 chr3 220360128 220363126 -7161452 - L1MA3 LINE L1 -3224 4341 1099 625 170 45 0 chr3 220363123 220363235 -7161343 - L1MA3 LINE L1 -7432 133 17 * 1319 192 21 0 chr3 220363235 220363522 -7161056 - MER33 DNA MER1_type -30 294 2 2150 111 3 22 chr3 220363630 220363946 -7160632 + AluSg SINE Alu 1 310 0 1753 245 108 7 chr3 220364035 220364472 -7160106 - MLT1D LTR MaLR -24 481 1 293 397 0 7 chr3 220365138 220365279 -7159299 - L1MEd LINE L1 -5737 382 243 616 118 9 9 chr3 220365382 220365492 -7159086 + (TTCC)n Simple_repeat Simple_repeat 4 113 0 2179 112 3 6 chr3 220365494 220365808 -7158770 - AluSq SINE Alu 0 313 1 279 191 45 90 chr3 220365831 220365920 -7158658 - L1MEd LINE L1 -5978 141 57 200 200 0 0 chr3 220366809 220366844 -7157734 + CT-rich Low_complexity Low_complexity 1 35 0 29 28 0 0 chr3 220367071 220367107 -7157471 + AT_rich Low_complexity Low_complexity 1 36 0 576 304 18 24 chr3 220367803 220367971 -7156607 + MIR3 SINE MIR 30 196 -12 513 198 20 0 chr3 220368142 220368243 -7156335 - MER5A DNA MER1_type -77 112 10 22 88 0 0 chr3 220368410 220368467 -7156111 + AT_rich Low_complexity Low_complexity 1 57 0 219 295 32 21 chr3 220369392 220369487 -7155091 - MER5A DNA MER1_type -87 102 7 219 69 0 0 chr3 220369863 220369892 -7154686 + (GA)n Simple_repeat Simple_repeat 2 30 0 274 304 176 8 chr3 220370159 220370284 -7154294 - MIR3 SINE MIR -50 158 13 964 40 0 16 chr3 220370539 220370665 -7153913 - L1PA4 LINE L1 -3 6152 6029 425 39 0 0 chr3 220370665 220370716 -7153862 + L1PA5 LINE L1 5842 5892 -262 744 167 16 0 chr3 220370966 220371092 -7153486 + FLAM_C SINE Alu 3 130 -13 183 100 0 0 chr3 220371094 220371124 -7153454 + (TAAAA)n Simple_repeat Simple_repeat 3 32 0 43 20 0 0 chr3 220371435 220371485 -7153093 + AT_rich Low_complexity Low_complexity 1 50 0 23 54 0 0 chr3 220371699 220371736 -7152842 + AT_rich Low_complexity Low_complexity 1 37 0 366 299 38 25 chr3 220371798 220371955 -7152623 - L3 LINE CR1 -103 1474 1316 2700 161 62 99 chr3 220372532 220373259 -7151319 - L1MD1 LINE L1 -9 6233 5534 744 323 94 17 chr3 220373465 220373815 -7150763 + LTR16A LTR ERVL 67 443 -7 807 345 37 23 chr3 220374177 220374326 -7150252 + HERV16 LTR ERVL 2743 2888 -2108 891 226 41 27 chr3 220374326 220374547 -7150031 - MER58A DNA MER1_type 0 224 1 807 345 37 23 chr3 220374547 220374745 -7149833 + HERV16 LTR ERVL 2888 3095 -1901 222 162 0 0 chr3 220375810 220375847 -7148731 - L2 LINE L2 -16 3297 3261 28 71 0 0 chr3 220376370 220376426 -7148152 + AT_rich Low_complexity Low_complexity 1 56 0 2501 63 0 0 chr3 220376679 220376978 -7147600 - AluY SINE Alu -12 299 1 201 147 0 0 chr3 220377091 220377125 -7147453 + (CA)n Simple_repeat Simple_repeat 2 35 0 1436 242 19 7 chr3 220377221 220377646 -7146932 - L1M4 LINE L1 -3493 2653 2224 4809 210 106 112 chr3 220377911 220380592 -7143986 - L1MCa LINE L1 -3875 2732 20 244 353 29 29 chr3 220380688 220380790 -7143788 + MIR SINE MIR 39 140 -68 23 33 0 0 chr3 220380882 220380912 -7143666 + AT_rich Low_complexity Low_complexity 1 30 0 22 35 0 0 chr3 220380938 220380967 -7143611 + AT_rich Low_complexity Low_complexity 1 29 0 300 27 0 0 chr3 220381777 220381814 -7142764 + (TC)n Simple_repeat Simple_repeat 2 38 0 21 0 0 0 chr3 220382228 220382249 -7142329 + AT_rich Low_complexity Low_complexity 1 21 0 260 311 78 64 chr3 220382256 220382475 -7142103 + L3b LINE CR1 1359 1580 -3 219 69 0 0 chr3 220385398 220385427 -7139151 + (GAAAA)n Simple_repeat Simple_repeat 2 30 0 340 238 24 24 chr3 220385544 220385628 -7138950 - MLT1K LTR MaLR -503 85 2 197 228 316 0 chr3 220385708 220385787 -7138791 - L2 LINE L2 -1 3271 3168 2865 166 78 51 chr3 220385830 220386512 -7138066 - L1MA9 LINE L1 -4 6308 5609 883 196 0 13 chr3 220386516 220386669 -7137909 - FRAM SINE Alu -21 155 5 1864 156 24 70 chr3 220386672 220387370 -7137208 - L1MA9 LINE L1 -696 5616 4951 3342 281 64 37 chr3 220387379 220387862 -7136716 + L1 LINE L1 3757 4226 -1920 234 62 0 0 chr3 220387862 220387894 -7136684 + (CAA)n Simple_repeat Simple_repeat 2 33 0 3342 281 64 37 chr3 220387894 220388567 -7136011 + L1 LINE L1 4226 4944 -1202 29 70 0 0 chr3 220389303 220389360 -7135218 + AT_rich Low_complexity Low_complexity 1 57 0 26 0 0 0 chr3 220389835 220389861 -7134717 + AT_rich Low_complexity Low_complexity 1 26 0 242 159 23 0 chr3 220390450 220390494 -7134084 + MSTD LTR MaLR 1 45 -351 815 227 95 41 chr3 220390842 220391206 -7133372 + MSTC LTR MaLR 1 428 0 353 399 58 16 chr3 220391630 220391888 -7132690 + L3 LINE CR1 1107 1375 -202 314 326 70 60 chr3 220392180 220392395 -7132183 + L3 LINE CR1 1361 1577 0 237 98 0 0 chr3 220392959 220393000 -7131578 + (CAGAGA)n Simple_repeat Simple_repeat 2 42 0 1161 187 3 132 chr3 220393169 220393495 -7131083 + AluJb SINE Alu 1 284 -18 359 325 88 6 chr3 220393584 220393744 -7130834 - MIR SINE MIR -70 192 20 358 288 82 13 chr3 220394049 220394282 -7130296 - L1ME4a LINE L1 -175 5946 5698 24 32 0 0 chr3 220394364 220394395 -7130183 + AT_rich Low_complexity Low_complexity 1 31 0 805 87 47 17 chr3 220394505 220394677 -7129901 + GA-rich Low_complexity Low_complexity 4 180 0 488 218 192 16 chr3 220394936 220395129 -7129449 - LTR50 LTR ERVL 0 795 569 * 585 254 170 10 chr3 220395123 220395524 -7129054 - LTR50 LTR ERVL -329 466 2 284 313 56 31 chr3 220395716 220395876 -7128702 + MIR SINE MIR 49 212 -50 25 31 0 0 chr3 220395955 220395987 -7128591 + AT_rich Low_complexity Low_complexity 1 32 0 273 322 0 11 chr3 220397011 220397101 -7127477 - L2 LINE L2 0 3313 3225 1209 250 26 37 chr3 220397648 220398076 -7126502 - L1ME1 LINE L1 -5 6161 5739 555 231 74 44 chr3 220398078 220398281 -7126297 - L1MEc LINE L1 -5941 455 247 * 807 286 32 38 chr3 220398279 220398650 -7125928 - L1MEc LINE L1 -5993 403 35 2485 59 0 0 chr3 220399462 220399767 -7124811 - AluY SINE Alu -6 305 1 1317 184 25 53 chr3 220400282 220400603 -7123975 - L1MA9 LINE L1 -7 6305 5994 21 0 0 0 chr3 220400677 220400698 -7123880 + AT_rich Low_complexity Low_complexity 1 21 0 751 271 78 71 chr3 220401173 220401468 -7123110 + L2 LINE L2 3009 3305 -8 252 184 0 0 chr3 220401870 220401908 -7122670 - Alu SINE Alu -262 38 1 384 236 61 128 chr3 220401908 220402111 -7122467 + L1M4b LINE L1 1480 1842 -5179 377 315 101 34 chr3 220403688 220403866 -7120712 - MIR3 SINE MIR -2 206 17 1544 204 14 3 chr3 220403941 220404235 -7120343 + AluJb SINE Alu 3 299 -13 2205 96 3 0 chr3 220405578 220405871 -7118707 + AluSg SINE Alu 1 294 -16 192 288 34 17 chr3 220406968 220407027 -7117551 - MIR3 SINE MIR -25 183 124 191 290 32 16 chr3 220407659 220407721 -7116857 - L2 LINE L2 -220 3052 2990 226 249 15 7 chr3 220407725 220407867 -7116711 + GA-rich Low_complexity Low_complexity 1 143 0 269 359 76 0 chr3 220408648 220408793 -7115785 + MIR SINE MIR 28 183 -79 321 265 29 37 chr3 220408899 220409035 -7115543 + Charlie8 DNA MER1_type 107 241 -2176 1443 203 35 69 chr3 220409441 220409845 -7114733 + MLT1B LTR MaLR 1 390 0 24 67 0 0 chr3 220410084 220410129 -7114449 + AT_rich Low_complexity Low_complexity 1 45 0 2701 26 0 0 chr3 220410467 220410773 -7113805 - AluYa5 SINE Alu -5 306 1 1900 183 11 8 chr3 220411170 220411542 -7113036 + L1MC1 LINE L1 5943 6315 -18 2368 74 0 3 chr3 220411552 220411848 -7112730 + AluY SINE Alu 1 295 -16 26 50 0 0 chr3 220412318 220412358 -7112220 + AT_rich Low_complexity Low_complexity 1 40 0 261 143 48 9 chr3 220412415 220412520 -7112058 + (TA)n Simple_repeat Simple_repeat 1 109 0 410 323 65 30 chr3 220413145 220413346 -7111232 - L3 LINE CR1 -368 1209 1002 253 388 74 16 chr3 220414891 220415012 -7109566 - L2 LINE L2 -4 3268 3141 275 144 17 65 chr3 220415300 220415357 -7109221 - L1MA8 LINE L1 -13 6278 6231 1435 183 84 9 chr3 220415357 220415680 -7108898 + MER7A DNA MER2_type 1 345 -1 275 144 17 65 chr3 220415680 220415694 -7108884 - L1MA8 LINE L1 -60 6231 6218 1697 191 24 35 chr3 220415719 220415770 -7108808 - L1MA8 LINE L1 -27 6264 6214 222 37 0 0 chr3 220415770 220415797 -7108781 + (CA)n Simple_repeat Simple_repeat 2 28 0 1697 191 24 35 chr3 220415797 220416169 -7108409 - L1MA8 LINE L1 -77 6214 5846 612 120 20 10 chr3 220416172 220416272 -7108306 + L1M1 LINE L1 5673 5773 -527 2295 113 0 3 chr3 220417661 220417970 -7106608 + AluSp SINE Alu 1 308 -5 273 254 64 82 chr3 220419137 220419247 -7105331 + MIR3 SINE MIR 95 202 -6 1965 118 3 43 chr3 220420033 220420337 -7104241 + AluSx SINE Alu 1 292 -20 211 240 117 91 chr3 220420611 220420765 -7103813 + MIR3 SINE MIR 25 182 -26 189 288 90 79 chr3 220422668 220422845 -7101733 + MIR SINE MIR 64 242 -20 243 0 0 0 chr3 220423132 220423159 -7101419 + (TG)n Simple_repeat Simple_repeat 2 28 0 1381 181 0 110 chr3 220423565 220423901 -7100677 - AluJb SINE Alu -2 300 2 722 219 0 0 chr3 220424270 220424407 -7100171 + MER3 DNA MER1_type 1 137 -72 2011 157 0 10 chr3 220424603 220424936 -7099642 + AluSx SINE Alu 1 330 0 238 356 129 20 chr3 220427053 220427255 -7097323 + MIR SINE MIR 29 252 -10 290 334 62 46 chr3 220427412 220427775 -7096803 - L2 LINE L2 -233 3039 2685 386 347 30 20 chr3 220428953 220429152 -7095426 + MLT1J LTR MaLR 1 201 -310 198 143 0 0 chr3 220429226 220429261 -7095317 + (CAT)n Simple_repeat Simple_repeat 1 35 0 640 301 84 21 chr3 220429261 220429500 -7095078 + MLT1J LTR MaLR 258 511 0 274 311 88 40 chr3 220429693 220429841 -7094737 - MIR SINE MIR -56 206 52 1017 268 152 30 chr3 220429993 220430500 -7094078 + L1MEc LINE L1 36 604 -5792 306 269 120 18 chr3 220430676 220430843 -7093735 - L2 LINE L2 -65 3248 3065 1149 289 134 14 chr3 220430881 220431379 -7093199 - L2 LINE L2 -415 2899 2342 2158 109 0 3 chr3 220431423 220431726 -7092852 - AluSq SINE Alu -11 302 1 303 355 90 7 chr3 220433467 220433622 -7090956 - MIR SINE MIR -59 203 36 393 316 82 36 chr3 220434131 220434327 -7090251 - MIR SINE MIR -10 252 48 441 278 129 93 chr3 220434904 220435300 -7089278 + LTR16A LTR ERVL 25 434 -16 236 350 101 55 chr3 220435535 220435969 -7088609 - L3 LINE CR1 -30 1547 1094 276 282 42 0 chr3 220435983 220436054 -7088524 - L2 LINE L2 0 3272 3199 21 0 0 0 chr3 220436521 220436542 -7088036 + AT_rich Low_complexity Low_complexity 1 21 0 308 317 155 0 chr3 220436716 220436858 -7087720 - MIR3 SINE MIR -11 197 34 852 270 19 23 chr3 220437036 220437299 -7087279 + MIR SINE MIR 1 262 0 2293 104 13 0 chr3 220437823 220438132 -7086446 - AluSp SINE Alu 0 313 1 2403 127 72 5 chr3 220438314 220438715 -7085863 + MSTA LTR MaLR 1 428 0 2121 126 0 16 chr3 220439073 220439382 -7085196 - AluSx SINE Alu -6 306 3 374 276 110 35 chr3 220439416 220439561 -7085017 - MER5B DNA MER1_type -1 177 22 797 184 43 54 chr3 220439597 220439782 -7084796 + MER5A DNA MER1_type 7 189 0 296 357 76 31 chr3 220440045 220440336 -7084242 + L2 LINE L2 2566 2869 -445 22 0 0 0 chr3 220443046 220443068 -7081510 + AT_rich Low_complexity Low_complexity 1 22 0 482 261 17 0 chr3 220443546 220443665 -7080913 - MER94 DNA DNA -3 131 11 222 118 0 0 chr3 220444233 220444267 -7080311 + (ATG)n Simple_repeat Simple_repeat 3 36 0 284 348 26 0 chr3 220444641 220444756 -7079822 + MIR SINE MIR 106 223 -39 365 331 23 8 chr3 220444868 220445001 -7079577 - MER5A DNA MER1_type 0 189 55 3019 170 35 17 chr3 220445471 220446072 -7078506 + L1MB7 LINE L1 5504 6115 -69 1908 167 11 45 chr3 220446545 220446685 -7077893 + MLT1A1 LTR MaLR 1 144 -221 952 182 40 20 chr3 220446685 220446932 -7077646 + L1MA8 LINE L1 6038 6289 -2 1908 167 11 45 chr3 220446932 220447169 -7077409 + MLT1A1 LTR MaLR 144 365 0 264 59 0 0 chr3 220447580 220447614 -7076964 + (A)n Simple_repeat Simple_repeat 1 34 0 1395 157 52 3 chr3 220447995 220448281 -7076297 + L1MA7 LINE L1 5987 6286 -5 262 257 0 14 chr3 220448932 220449002 -7075576 - MIR SINE MIR -65 197 129 22 0 0 0 chr3 220449157 220449179 -7075399 + AT_rich Low_complexity Low_complexity 1 22 0 281 229 73 52 chr3 220450028 220450124 -7074454 + MER5A DNA MER1_type 9 106 -83 348 94 10 177 chr3 220451455 220451486 -7073092 + MADE1 DNA Mariner 1 36 -44 2061 126 0 0 chr3 220451486 220451779 -7072799 + AluSx SINE Alu 1 293 -19 348 94 10 177 chr3 220451779 220451843 -7072735 + MADE1 DNA Mariner 36 80 0 297 0 0 0 chr3 220452512 220452545 -7072033 + (TTTA)n Simple_repeat Simple_repeat 2 34 0 15195 221 29 21 chr3 220452545 220455318 -7069260 - L1PA15 LINE L1 -5 6811 4063 1994 113 0 53 chr3 220455318 220455620 -7068958 - AluSc SINE Alu -23 286 1 15195 221 29 21 chr3 220455620 220458358 -7066220 - L1PA15 LINE L1 -2753 4063 1233 2035 150 3 32 chr3 220459488 220459835 -7064743 + MER1B DNA MER1_type 1 337 0 953 280 96 23 chr3 220460854 220461293 -7063285 + HAL1b LINE L1 307 777 -571 419 219 98 32 chr3 220461711 220461834 -7062744 + L2 LINE L2 3182 3312 -1 318 306 75 24 chr3 220461922 220462255 -7062323 + L1MC4a LINE L1 2894 3243 -2903 743 198 141 16 chr3 220462257 220462449 -7062129 - MER20 DNA MER1_type 0 219 4 21 82 0 0 chr3 220462620 220462669 -7061909 + AT_rich Low_complexity Low_complexity 1 49 0 389 265 60 97 chr3 220463165 220463541 -7061037 + L1MC4a LINE L1 4591 4948 -1198 873 311 92 31 chr3 220463982 220464599 -7059979 + L1MC4a LINE L1 5399 6053 -1755 1628 172 14 21 chr3 220465104 220465272 -7059306 - AluJo SINE Alu -23 289 122 207 0 0 0 chr3 220465272 220465295 -7059283 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 1628 172 14 21 chr3 220465295 220465417 -7059161 - AluJo SINE Alu -190 122 1 245 318 85 54 chr3 220465557 220465686 -7058892 - L2 LINE L2 -5 3308 3176 26 30 0 0 chr3 220466173 220466206 -7058372 + AT_rich Low_complexity Low_complexity 1 33 0 2181 105 7 3 chr3 220466542 220466838 -7057740 + AluSq SINE Alu 2 298 -15 494 138 25 0 chr3 220466839 220466919 -7057659 + GA-rich Low_complexity Low_complexity 1 82 0 953 125 0 27 chr3 220466919 220467103 -7057475 + (GGAA)n Simple_repeat Simple_repeat 2 180 0 2128 78 11 4 chr3 220467364 220467684 -7056894 - AluSp SINE Alu 0 322 1 32 43 0 0 chr3 220467758 220467804 -7056774 + AT_rich Low_complexity Low_complexity 1 46 0 251 325 116 44 chr3 220468026 220468485 -7056093 - L1MEd LINE L1 -5556 563 72 217 281 146 45 chr3 220469280 220469479 -7055099 + L3 LINE CR1 1296 1514 -63 1187 156 0 33 chr3 220470110 220470321 -7054257 + AluJb SINE Alu 87 290 -22 220 299 15 0 chr3 220470709 220470776 -7053802 + L2 LINE L2 3204 3271 -1 24 67 0 0 chr3 220472028 220472073 -7052505 + AT_rich Low_complexity Low_complexity 1 45 0 1660 234 37 23 chr3 220472934 220473451 -7051127 + L1ME3 LINE L1 5555 6078 -84 2113 127 0 6 chr3 220473712 220474078 -7050500 + AluSx SINE Alu 1 364 0 271 214 14 29 chr3 220474953 220475023 -7049555 + GA-rich Low_complexity Low_complexity 4 72 0 3177 121 28 4 chr3 220475437 220475968 -7048610 - L1MA8 LINE L1 -6 6285 5742 248 256 149 33 chr3 220476068 220476189 -7048389 + L3 LINE CR1 1441 1575 -2 604 277 40 47 chr3 220476536 220476789 -7047789 + MIR SINE MIR 12 262 0 22 0 0 0 chr3 220476804 220476826 -7047752 + AT_rich Low_complexity Low_complexity 1 22 0 204 214 43 0 chr3 220477953 220478023 -7046555 + (TA)n Simple_repeat Simple_repeat 2 74 0 24 0 0 0 chr3 220479548 220479572 -7045006 + AT_rich Low_complexity Low_complexity 1 24 0 216 0 0 0 chr3 220479609 220479633 -7044945 + (TTTG)n Simple_repeat Simple_repeat 1 24 0 1774 167 10 0 chr3 220479709 220480002 -7044576 + AluSx SINE Alu 1 296 -16 1587 199 64 0 chr3 220483988 220484314 -7040264 + MER7A DNA MER2_type 2 346 0 201 321 54 45 chr3 220484594 220484706 -7039872 + L2 LINE L2 3155 3267 -5 239 258 383 16 chr3 220484868 220484996 -7039582 + MER5A DNA MER1_type 9 183 -6 313 256 83 17 chr3 220485010 220485205 -7039373 + MER5B DNA MER1_type 1 178 0 469 203 32 24 chr3 220486070 220486193 -7038385 - MIR SINE MIR -56 206 83 1320 214 22 65 chr3 220487002 220487357 -7037221 + MER58B DNA MER1_type 1 340 -1 214 270 263 33 chr3 220487412 220487564 -7037014 + MIR SINE MIR 63 249 -13 320 356 69 56 chr3 220487592 220487898 -7036680 + L2 LINE L2 2962 3271 -1 258 32 0 0 chr3 220488330 220488361 -7036217 + (CA)n Simple_repeat Simple_repeat 1 31 0 187 161 36 0 chr3 220489066 220489122 -7035456 + (TCTA)n Simple_repeat Simple_repeat 1 58 0 2480 164 26 2 chr3 220489947 220490363 -7034215 + MSTB LTR MaLR 1 426 0 2060 132 0 22 chr3 220490433 220490751 -7033827 - AluSx SINE Alu -1 311 1 455 237 188 36 chr3 220490934 220491158 -7033420 + MIR SINE MIR 4 261 -1 429 291 40 36 chr3 220491228 220491451 -7033127 - L1ME LINE L1 -298 5823 5600 498 165 0 0 chr3 220492268 220492371 -7032207 + GA-rich Low_complexity Low_complexity 3 105 0 181 292 0 0 chr3 220495165 220495213 -7029365 + L2 LINE L2 3266 3313 0 210 115 58 0 chr3 220496088 220496140 -7028438 + GA-rich Low_complexity Low_complexity 2 56 0 1250 163 50 6 chr3 220496652 220497078 -7027500 + LTR54 LTR ERV1 4 508 -2 3480 156 29 20 chr3 220498062 220498709 -7025869 + MER39B LTR ERV1 1 653 0 2332 86 0 0 chr3 220499300 220499592 -7024986 - AluSg SINE Alu -18 292 1 216 0 0 0 chr3 220500762 220500786 -7023792 + (TA)n Simple_repeat Simple_repeat 1 24 0 789 258 81 0 chr3 220500928 220501126 -7023452 - MIR SINE MIR -34 228 15 513 241 38 8 chr3 220501271 220501404 -7023174 + MIR3 SINE MIR 63 199 -9 24 53 0 0 chr3 220501937 220501975 -7022603 + AT_rich Low_complexity Low_complexity 1 38 0 673 265 73 0 chr3 220502081 220502285 -7022293 - MIR SINE MIR -1 261 43 1773 209 66 30 chr3 220502607 220503048 -7021530 - MLT1C LTR MaLR 0 467 11 262 246 213 49 chr3 220503693 220503815 -7020763 + L2 LINE L2 3172 3313 0 185 81 0 54 chr3 220503815 220503852 -7020726 + (TGAA)n Simple_repeat Simple_repeat 2 36 0 182 91 30 0 chr3 220504197 220504230 -7020348 + (TA)n Simple_repeat Simple_repeat 2 35 0 280 177 97 0 chr3 220504311 220504373 -7020205 - L1MC2 LINE L1 -20 6324 6257 421 343 0 0 chr3 220506755 220506889 -7017689 - MIR SINE MIR -109 153 20 186 379 63 48 chr3 220507438 220507644 -7016934 - L2 LINE L2 -58 3214 3006 319 398 0 0 chr3 220509224 220509347 -7015231 - L2 LINE L2 -9 3263 3141 22 35 0 0 chr3 220509979 220510008 -7014570 + AT_rich Low_complexity Low_complexity 1 29 0 597 312 35 0 chr3 220510707 220510906 -7013672 - L2 LINE L2 0 3313 3108 186 356 159 0 chr3 220511192 220511324 -7013254 + MIR SINE MIR 104 256 -6 21 0 0 0 chr3 220511389 220511410 -7013168 + AT_rich Low_complexity Low_complexity 1 21 0 329 333 67 0 chr3 220511425 220511560 -7013018 - MIR SINE MIR -70 192 49 1310 171 70 0 chr3 220511576 220511862 -7012716 + L1MA7 LINE L1 5984 6289 -2 292 306 8 8 chr3 220512443 220512564 -7012014 + (TA)n Simple_repeat Simple_repeat 2 122 0 1750 194 0 7 chr3 220512830 220513134 -7011444 + AluJb SINE Alu 1 302 -10 1613 169 7 18 chr3 220514320 220514599 -7009979 - AluJo SINE Alu -24 288 13 649 249 89 6 chr3 220515301 220515470 -7009108 - MLT1A1 LTR MaLR 0 365 183 * 1970 119 45 42 chr3 220515452 220515805 -7008773 + THE1B LTR MaLR 8 361 -3 907 175 63 5 chr3 220515805 220515993 -7008585 - MLT1A1 LTR MaLR -166 199 1 202 340 0 0 chr3 220516754 220516807 -7007771 - MIR SINE MIR -126 82 30 31 0 0 0 chr3 220517383 220517414 -7007164 + AT_rich Low_complexity Low_complexity 1 31 0 1740 142 6 77 chr3 220517414 220517737 -7006841 - AluJb SINE Alu -12 300 1 1992 164 0 0 chr3 220517744 220518055 -7006523 - AluJb SINE Alu -1 311 1 21 0 0 0 chr3 220518788 220518809 -7005769 + AT_rich Low_complexity Low_complexity 1 21 0 257 333 115 0 chr3 220519546 220519633 -7004945 + L2 LINE L2 3149 3245 -27 205 262 16 0 chr3 220519669 220519730 -7004848 + (TTCA)n Simple_repeat Simple_repeat 3 64 0 1953 188 28 37 chr3 220519925 220520000 -7004578 - MSTB1 LTR MaLR 0 432 358 1935 122 35 7 chr3 220520000 220520288 -7004290 + AluSx SINE Alu 1 296 -16 1953 188 28 37 chr3 220520288 220520648 -7003930 - MSTB1 LTR MaLR -74 358 1 639 174 20 34 chr3 220522112 220522261 -7002317 + Charlie4 DNA MER1_type 1815 1961 0 1614 163 65 4 chr3 220522269 220522546 -7002032 + AluSx SINE Alu 3 296 -16 611 353 69 27 chr3 220522923 220523257 -7001321 - L2 LINE L2 0 3272 2925 214 325 34 8 chr3 220523695 220523812 -7000766 + MIR3 SINE MIR 70 189 -19 204 311 111 11 chr3 220524329 220524419 -7000159 - L2 LINE L2 -258 3014 2916 209 313 31 75 chr3 220525240 220525400 -6999178 + MIR SINE MIR 64 216 -46 21 57 0 0 chr3 220526126 220526161 -6998417 + AT_rich Low_complexity Low_complexity 1 35 0 228 319 35 60 chr3 220526397 220526513 -6998065 + L2 LINE L2 3197 3309 -4 270 281 8 55 chr3 220526525 220526653 -6997925 + GA-rich Low_complexity Low_complexity 3 124 0 210 37 0 0 chr3 220527213 220527240 -6997338 + (TA)n Simple_repeat Simple_repeat 2 28 0 2120 74 0 0 chr3 220527388 220527645 -6996933 - AluY SINE Alu -6 305 49 21 0 0 0 chr3 220527683 220527704 -6996874 + AT_rich Low_complexity Low_complexity 1 21 0 660 178 0 0 chr3 220528004 220528111 -6996467 + FLAM_C SINE Alu 1 107 -36 197 291 63 13 chr3 220528374 220528453 -6996125 + MIR3 SINE MIR 121 203 -5 27 29 0 0 chr3 220528464 220528498 -6996080 + AT_rich Low_complexity Low_complexity 1 34 0 31 57 0 14 chr3 220529891 220529929 -6994649 + AT_rich Low_complexity Low_complexity 1 39 -30 2142 90 10 13 chr3 220529929 220530229 -6994349 + AluSp SINE Alu 1 299 -14 31 57 0 14 chr3 220530229 220530260 -6994318 + AT_rich Low_complexity Low_complexity 39 69 0 198 338 84 89 chr3 220530981 220531206 -6993372 - L2 LINE L2 -54 3218 2995 3933 190 46 16 chr3 220532659 220533454 -6991124 - L1MB7 LINE L1 -6 6178 5332 480 35 0 0 chr3 220533454 220533512 -6991066 + (TCTA)n Simple_repeat Simple_repeat 2 59 0 3933 190 46 16 chr3 220533512 220533877 -6990701 - L1MB7 LINE L1 -852 5332 4980 233 143 0 20 chr3 220533877 220533926 -6990652 - L1MB7 LINE L1 -1132 5014 4967 626 82 0 0 chr3 220534210 220534295 -6990283 + AluY SINE Alu 212 296 -15 183 304 103 43 chr3 220534545 220534729 -6989849 + L2 LINE L2 2995 3189 -124 21 0 0 0 chr3 220534789 220534810 -6989768 + AT_rich Low_complexity Low_complexity 1 21 0 1259 232 27 40 chr3 220535395 220535765 -6988813 + MLT1A1 LTR MaLR 1 365 0 216 191 0 0 chr3 220535800 220535847 -6988731 + A-rich Low_complexity Low_complexity 1 47 0 404 295 14 50 chr3 220536396 220536535 -6988043 + MER94 DNA DNA 1 134 0 313 286 10 20 chr3 220537461 220537559 -6987019 - MLT1K LTR MaLR -25 563 467 20917 169 30 15 chr3 220537721 220540498 -6984080 + L1MA3 LINE L1 17 2751 -4814 270 0 0 0 chr3 220540498 220540528 -6984050 + (CAAAA)n Simple_repeat Simple_repeat 2 31 0 20917 169 30 15 chr3 220540528 220540847 -6983731 + L1MA3 LINE L1 2751 3064 -4501 2120 107 7 0 chr3 220540847 220541154 -6983424 + AluSx SINE Alu 1 309 0 20917 169 30 15 chr3 220541154 220544027 -6980551 + L1MA3 LINE L1 3064 6092 -1473 207 69 0 0 chr3 220544027 220544056 -6980522 + (CA)n Simple_repeat Simple_repeat 1 29 0 20917 169 30 15 chr3 220544056 220544433 -6980145 + L1MA3 LINE L1 6092 6462 -1103 4873 150 47 18 chr3 220544436 220545329 -6979249 + L1MA3 LINE L1 6744 7609 -115 1776 154 7 3 chr3 220545329 220545615 -6978963 + AluSx SINE Alu 1 287 -25 201 39 0 0 chr3 220545615 220545641 -6978937 + (TTAA)n Simple_repeat Simple_repeat 1 26 0 4873 150 47 18 chr3 220545641 220545698 -6978880 + L1MA3 LINE L1 7608 7723 -1 23 0 0 0 chr3 220545698 220545721 -6978857 + AT_rich Low_complexity Low_complexity 1 23 0 484 320 43 30 chr3 220545981 220546212 -6978366 - MIR SINE MIR -17 245 12 222 349 65 9 chr3 220548536 220548714 -6975864 + MIR SINE MIR 2 189 -73 1057 223 5 0 chr3 220549232 220549434 -6975144 - AluJb SINE Alu -23 289 87 1041 276 89 36 chr3 220549762 220550200 -6974378 + MER77 LTR ERV1 136 596 -9 248 254 14 42 chr3 220550188 220550259 -6974319 + MER21A LTR ERV1 673 741 -190 * 292 420 0 0 chr3 220550309 220550421 -6974157 + L2 LINE L2 3198 3309 -4 197 310 17 0 chr3 220550576 220550634 -6973944 - L2 LINE L2 -8 3264 3206 3436 195 48 78 chr3 220551554 220552118 -6972460 + L1MB2 LINE L1 4418 4997 -1174 879 104 0 0 chr3 220552118 220552267 -6972311 + AluSc SINE Alu 175 323 0 3436 195 48 78 chr3 220552267 220553291 -6971287 + L1MB2 LINE L1 4997 6064 -107 313 299 76 41 chr3 220553292 220553583 -6970995 + L1MEc LINE L1 1763 2001 -4539 21 0 0 0 chr3 220553874 220553895 -6970683 + AT_rich Low_complexity Low_complexity 1 21 0 2112 219 78 13 chr3 220555224 220555827 -6968751 - LTR48B LTR ERV1 0 644 3 222 379 38 8 chr3 220556232 220556364 -6968214 - MIR3 SINE MIR -53 155 20 274 362 141 22 chr3 220557087 220557272 -6967306 + MIR3 SINE MIR 2 208 0 308 294 76 0 chr3 220557619 220557711 -6966867 - L1MC4 LINE L1 -1330 6712 6614 386 300 113 19 chr3 220559085 220559245 -6965333 + MIR SINE MIR 20 194 -68 189 268 101 72 chr3 220559437 220559575 -6965003 - MIR SINE MIR -32 230 89 1223 102 0 6 chr3 220559698 220559864 -6964714 - AluSg SINE Alu -105 205 41 460 278 117 65 chr3 220559930 220560315 -6964263 + MLT1J LTR MaLR 105 509 -2 2504 178 14 15 chr3 220562226 220562744 -6961834 + L1 LINE L1 4887 5403 -743 1151 229 70 15 chr3 220562757 220563159 -6961419 + MER69 DNA AcHobo 2095 2518 -8 256 361 31 10 chr3 220563470 220563567 -6961011 - L2 LINE L2 0 3272 3174 217 338 15 0 chr3 220563651 220563719 -6960859 + L2 LINE L2 3204 3272 0 1572 180 6 41 chr3 220564009 220564325 -6960253 + AluJo SINE Alu 1 305 -7 278 148 19 0 chr3 220564501 220564555 -6960023 + GA-rich Low_complexity Low_complexity 3 57 0 918 35 86 0 chr3 220565518 220565634 -6958944 + MER85 DNA T2_type 13 138 -1 268 314 12 12 chr3 220566661 220566747 -6957831 - L2 LINE L2 -36 3236 3151 314 248 53 98 chr3 220566781 220566914 -6957664 - MIR SINE MIR -118 144 18 2722 7 3 0 chr3 220566925 220567223 -6957355 + AluY SINE Alu 1 299 -12 186 362 71 20 chr3 220567599 220567795 -6956783 + L2 LINE L2 2626 2831 -483 304 279 115 16 chr3 220568202 220568324 -6956254 + MER117 DNA MER1_type 27 160 -37 536 282 80 0 chr3 220568538 220568701 -6955877 + MER5B DNA MER1_type 2 177 -1 396 209 132 0 chr3 220568787 220568878 -6955700 + MER5A DNA MER1_type 4 106 -83 334 325 16 16 chr3 220569414 220569537 -6955041 - MIR SINE MIR -111 151 29 25 95 0 0 chr3 220569942 220570016 -6954562 + AT_rich Low_complexity Low_complexity 1 74 0 719 340 40 4 chr3 220570215 220570468 -6954110 + MIR SINE MIR 1 262 0 616 182 50 25 chr3 220571399 220571520 -6953058 - L2 LINE L2 0 3313 3190 1287 275 71 33 chr3 220571899 220572558 -6952020 - L2 LINE L2 -114 3199 2522 259 315 0 56 chr3 220572700 220572808 -6951770 - MIR3 SINE MIR -6 202 101 323 302 9 0 chr3 220572819 220572925 -6951653 - MIR SINE MIR -133 129 23 2453 76 0 0 chr3 220573914 220574216 -6950362 - AluY SINE Alu -9 302 1 228 157 39 20 chr3 220575187 220575238 -6949340 + (TAGA)n Simple_repeat Simple_repeat 3 54 0 1992 227 52 14 chr3 220575334 220575888 -6948690 - MER90 LTR ERV1 0 575 1 595 243 28 28 chr3 220576828 220577046 -6947532 + L1MD3 LINE L1 7767 7984 -11 2258 108 0 0 chr3 220577052 220577348 -6947230 + AluSc SINE Alu 1 296 -13 419 69 0 0 chr3 220577381 220577439 -6947139 + Alu SINE Alu 239 296 -15 394 276 84 44 chr3 220577479 220577682 -6946896 - L2 LINE L2 -2 3311 3101 340 280 74 39 chr3 220577720 220577977 -6946601 + L1ME3A LINE L1 5683 5948 -222 21 0 0 0 chr3 220578113 220578134 -6946444 + AT_rich Low_complexity Low_complexity 1 21 0 32 75 0 0 chr3 220578204 220578271 -6946307 + AT_rich Low_complexity Low_complexity 1 67 0 210 91 0 0 chr3 220578324 220578357 -6946221 + (TG)n Simple_repeat Simple_repeat 1 33 0 21 36 0 0 chr3 220578661 220578689 -6945889 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr3 220579065 220579094 -6945484 + AT_rich Low_complexity Low_complexity 1 29 0 28 71 0 0 chr3 220579700 220579756 -6944822 + AT_rich Low_complexity Low_complexity 1 56 0 189 107 0 0 chr3 220579796 220579824 -6944754 + (TA)n Simple_repeat Simple_repeat 2 29 0 198 0 0 0 chr3 220581019 220581041 -6943537 + (A)n Simple_repeat Simple_repeat 1 22 0 800 269 144 9 chr3 220581112 220581432 -6943146 + Tigger8 DNA MER2_type 67 429 -237 256 299 0 26 chr3 220581441 220581518 -6943060 - L2 LINE L2 0 3272 3198 181 333 130 49 chr3 220581751 220581913 -6942665 + MIR3 SINE MIR 4 178 -30 2016 57 4 11 chr3 220582087 220582352 -6942226 - L1PA6 LINE L1 -5 6149 5887 180 328 31 16 chr3 220582447 220582511 -6942067 + MIR SINE MIR 81 145 -63 2099 36 0 0 chr3 220582848 220583098 -6941480 + L1PA5 LINE L1 5905 6154 0 211 293 17 0 chr3 220583504 220583562 -6941016 + L2 LINE L2 2988 3046 -226 282 335 108 51 chr3 220583681 220583977 -6940601 - L2 LINE L2 -7 3265 2953 1048 286 90 6 chr3 220584281 220584638 -6939940 + MLT1J2 LTR MaLR 1 387 -63 2814 179 19 66 chr3 220584638 220584946 -6939632 + L1MC3 LINE L1 7150 7412 -373 739 188 13 0 chr3 220584946 220585095 -6939483 + L1MA3 LINE L1 6152 6302 -3 2814 179 19 66 chr3 220585095 220585452 -6939126 + L1MC3 LINE L1 7412 7784 -1 272 283 54 11 chr3 220585847 220585939 -6938639 - MIR SINE MIR -71 137 42 786 285 67 83 chr3 220586490 220586971 -6937607 + L3 LINE CR1 1095 1567 -10 21 36 0 0 chr3 220587834 220587862 -6936716 + AT_rich Low_complexity Low_complexity 1 28 0 348 264 9 57 chr3 220588006 220588112 -6936466 + MER63A DNA MER1_type 77 177 -33 529 267 106 28 chr3 220588140 220588395 -6936183 - L2 LINE L2 -104 3209 2935 694 250 26 0 chr3 220588550 220588702 -6935876 + MER58B DNA MER1_type 185 340 -1 493 323 107 47 chr3 220588711 220589049 -6935529 + L2 LINE L2 2914 3271 -1 213 335 71 58 chr3 220589570 220590053 -6934525 - L2 LINE L2 -50 3263 2762 347 225 116 35 chr3 220590053 220590226 -6934352 - Charlie7 DNA MER1_type 0 2612 2426 1007 168 0 0 chr3 220590241 220590396 -6934182 + FRAM SINE Alu 1 155 -21 236 294 29 20 chr3 220591018 220591120 -6933458 - MIR3 SINE MIR -1 207 105 668 299 129 58 chr3 220591648 220592223 -6932355 + L2 LINE L2 2677 3283 -30 213 172 190 0 chr3 220592244 220592302 -6932276 + MIR3 SINE MIR 86 154 -54 633 244 73 60 chr3 220593522 220593756 -6930822 - MIR SINE MIR 0 262 26 324 260 0 73 chr3 220593953 220594145 -6930433 + T-rich Low_complexity Low_complexity 1 178 0 270 229 10 31 chr3 220595074 220595170 -6929408 - MER33 DNA MER1_type 0 324 231 913 174 92 5 chr3 220595234 220595441 -6929137 - MER33 DNA MER1_type -99 225 1 191 339 39 39 chr3 220595711 220595841 -6928737 - L2 LINE L2 -64 3249 3120 2012 117 13 7 chr3 220596267 220596566 -6928012 - AluY SINE Alu -10 301 1 22 0 0 0 chr3 220597023 220597045 -6927533 + AT_rich Low_complexity Low_complexity 1 22 0 346 280 121 22 chr3 220597081 220597263 -6927315 - L2 LINE L2 -527 2787 2588 22 56 0 0 chr3 220597790 220597826 -6926752 + AT_rich Low_complexity Low_complexity 1 36 0 204 288 58 43 chr3 220598020 220598159 -6926419 - L2 LINE L2 -936 2378 2238 204 240 20 0 chr3 220598406 220598456 -6926122 - L2 LINE L2 -25 3247 3197 799 53 9 9 chr3 220598709 220598823 -6925755 + (TTTC)n Simple_repeat Simple_repeat 1 114 0 1905 131 4 4 chr3 220598823 220599097 -6925481 - AluJo SINE Alu -35 277 4 2826 125 11 0 chr3 220599447 220599887 -6924691 - L1PA13 LINE L1 -7 6156 5712 21 57 0 0 chr3 220599967 220600002 -6924576 + AT_rich Low_complexity Low_complexity 1 35 0 479 155 12 12 chr3 220600036 220600120 -6924458 + L1MC1 LINE L1 6237 6320 -13 295 238 0 16 chr3 220600456 220600519 -6924059 + MIR SINE MIR 18 79 -129 536 311 28 17 chr3 220601324 220601501 -6923077 - MIR3 SINE MIR -12 196 18 276 225 8 132 chr3 220601602 220601731 -6922847 - MIR SINE MIR -70 192 80 206 118 0 0 chr3 220602508 220602542 -6922036 + (CA)n Simple_repeat Simple_repeat 2 35 0 217 370 66 66 chr3 220602886 220603218 -6921360 - L2 LINE L2 -18 3254 2923 445 337 35 0 chr3 220603876 220604048 -6920530 + MIR3 SINE MIR 25 202 -6 306 337 58 29 chr3 220604561 220604804 -6919774 + MIR SINE MIR 13 262 0 2282 91 7 3 chr3 220604856 220605152 -6919426 + AluSg SINE Alu 1 297 -13 216 313 62 25 chr3 220605948 220606028 -6918550 + L2 LINE L2 3096 3178 -94 272 416 80 17 chr3 220606472 220606710 -6917868 + L2 LINE L2 2977 3229 -43 2198 175 63 2 chr3 220607677 220608135 -6916443 + L1MB2 LINE L1 5684 6169 -2 2135 118 14 0 chr3 220612043 220612331 -6912247 - AluSx SINE Alu -8 304 13 1570 197 28 17 chr3 220612802 220613163 -6911415 + MLT1A1 LTR MaLR 1 365 0 317 206 16 0 chr3 220613347 220613410 -6911168 + MER5B DNA MER1_type 115 178 0 341 190 9 95 chr3 220613569 220613685 -6910893 + MER2 DNA MER2_type 1 106 -239 2211 130 0 0 chr3 220614024 220614325 -6910253 - AluSg SINE Alu -5 305 5 1838 160 55 18 chr3 220614588 220615026 -6909552 - Charlie1 DNA MER1_type 0 2761 2308 605 224 11 82 chr3 220615022 220615205 -6909373 - Charlie1 DNA MER1_type -2591 170 1 * 458 310 117 26 chr3 220615205 220615616 -6908962 + L2 LINE L2 2605 3054 -218 474 282 70 7 chr3 220615629 220615771 -6908807 - MIR SINE MIR -111 151 1 28 48 0 0 chr3 220616418 220616460 -6908118 + AT_rich Low_complexity Low_complexity 1 42 0 258 288 14 0 chr3 220617949 220618022 -6906556 + MIR3 SINE MIR 129 202 -6 329 372 21 37 chr3 220618679 220618867 -6905711 + MIR3 SINE MIR 14 198 -10 276 111 0 0 chr3 220621313 220621358 -6903220 + (TGGA)n Simple_repeat Simple_repeat 3 47 0 333 0 0 0 chr3 220621382 220621419 -6903159 + (TGAA)n Simple_repeat Simple_repeat 4 40 0 26 0 0 0 chr3 220622138 220622164 -6902414 + GC_rich Low_complexity Low_complexity 1 26 0 333 277 123 106 chr3 220622967 220623921 -6900657 - L1M2 LINE L1 -5443 1406 446 248 250 13 26 chr3 220623931 220624007 -6900571 + CT-rich Low_complexity Low_complexity 2 76 0 338 229 74 66 chr3 220625657 220625779 -6898799 - MER5A DNA MER1_type -22 167 45 918 249 23 0 chr3 220627783 220628004 -6896574 - MIR SINE MIR -33 229 4 300 329 50 16 chr3 220628118 220628290 -6896288 - MIR SINE MIR -55 207 30 396 293 49 8 chr3 220628878 220629001 -6895577 + L2 LINE L2 3186 3313 0 405 0 0 0 chr3 220629300 220629345 -6895233 + (CA)n Simple_repeat Simple_repeat 1 45 0 204 338 0 0 chr3 220630054 220630128 -6894450 + (TGAA)n Simple_repeat Simple_repeat 3 76 0 269 352 15 78 chr3 220631528 220631798 -6892780 + L2 LINE L2 2933 3185 -87 418 252 35 17 chr3 220632752 220632867 -6891711 + MIR3 SINE MIR 82 198 -10 225 300 0 0 chr3 220634185 220634245 -6890333 + L2 LINE L2 3250 3309 -4 425 158 12 0 chr3 220634724 220634806 -6889772 + CT-rich Low_complexity Low_complexity 2 84 0 1980 87 53 0 chr3 220634806 220634949 -6889629 - AluSp SINE Alu -34 279 145 410 0 20 0 chr3 220634949 220634999 -6889579 + (TTTA)n Simple_repeat Simple_repeat 2 52 0 1980 87 53 0 chr3 220634999 220635120 -6889458 - AluSp SINE Alu -168 145 1 327 184 195 0 chr3 220635344 220635431 -6889147 - MER5A DNA MER1_type -77 112 9 341 289 12 0 chr3 220635765 220635848 -6888730 - L3 LINE CR1 -453 1124 1041 186 359 27 49 chr3 220636361 220636545 -6888033 + L2 LINE L2 2239 2418 -896 1440 228 31 3 chr3 220637928 220638287 -6886291 + MSTB1 LTR MaLR 1 369 -63 2101 103 17 0 chr3 220638287 220638578 -6886000 - AluSx SINE Alu -16 296 1 26 50 0 0 chr3 220638823 220638863 -6885715 + AT_rich Low_complexity Low_complexity 1 40 0 27 87 0 0 chr3 220638937 220639006 -6885572 + AT_rich Low_complexity Low_complexity 1 69 0 1519 177 7 27 chr3 220639386 220639680 -6884898 - AluJo SINE Alu -24 288 1 1504 148 3 121 chr3 220639758 220640088 -6884490 - AluJb SINE Alu -7 295 5 185 283 0 0 chr3 220640754 220640800 -6883778 + L2 LINE L2 3256 3301 -12 25 65 0 0 chr3 220640995 220641041 -6883537 + AT_rich Low_complexity Low_complexity 1 46 0 221 200 33 17 chr3 220641613 220641673 -6882905 + MIR SINE MIR 98 158 -104 1038 292 101 32 chr3 220641712 220642274 -6882304 + MER115 DNA AcHobo 59 659 -34 191 264 55 106 chr3 220642615 220642850 -6881728 + L3 LINE CR1 1209 1431 -146 2288 166 15 5 chr3 220643674 220644077 -6880501 + MSTB LTR MaLR 1 407 -19 326 225 20 81 chr3 220644473 220644572 -6880006 + MIR SINE MIR 79 172 -36 2841 69 0 0 chr3 220644749 220645112 -6879466 + L1PA7 LINE L1 5790 6152 -2 407 280 28 88 chr3 220645978 220646160 -6878418 - MIR SINE MIR -34 228 58 261 0 0 0 chr3 220646719 220646748 -6877830 + (CA)n Simple_repeat Simple_repeat 2 30 0 22 56 0 0 chr3 220646979 220647015 -6877563 + AT_rich Low_complexity Low_complexity 1 36 0 739 299 233 24 chr3 220647204 220647986 -6876592 - L2 LINE L2 -899 2415 1471 209 287 89 10 chr3 220648197 220648298 -6876280 + MER91C DNA MER1_type 24 132 -8 183 286 36 18 chr3 220648353 220648409 -6876169 + MIR SINE MIR 34 90 -118 189 175 0 0 chr3 220648449 220648489 -6876089 + (TAGA)n Simple_repeat Simple_repeat 2 41 0 2010 73 7 28 chr3 220648819 220649106 -6875472 - AluSp SINE Alu -27 286 6 33 43 0 0 chr3 220649191 220649238 -6875340 + AT_rich Low_complexity Low_complexity 1 47 0 340 365 48 41 chr3 220649398 220649688 -6874890 - L1MEd LINE L1 -5496 623 332 320 235 42 25 chr3 220649827 220649946 -6874632 - L1MEd LINE L1 -5952 167 47 209 240 20 0 chr3 220650172 220650222 -6874356 - L2 LINE L2 -25 3247 3197 23 33 0 0 chr3 220650264 220650294 -6874284 + AT_rich Low_complexity Low_complexity 1 30 0 592 87 29 0 chr3 220650485 220650589 -6873989 + (TTTC)n Simple_repeat Simple_repeat 4 110 0 504 181 60 17 chr3 220650592 220650708 -6873870 - FRAM SINE Alu -18 158 38 2012 108 3 11 chr3 220651218 220651505 -6873073 - AluSx SINE Alu -27 285 1 23 86 0 0 chr3 220651865 220651923 -6872655 + AT_rich Low_complexity Low_complexity 1 58 0 24 67 0 0 chr3 220652457 220652502 -6872076 + AT_rich Low_complexity Low_complexity 1 45 0 2091 135 135 5 chr3 220653824 220654201 -6870377 + MSTA LTR MaLR 1 426 -2 411 327 123 14 chr3 220654206 220654417 -6870161 - MIR SINE MIR -7 255 22 196 155 17 17 chr3 220655018 220655076 -6869502 + CT-rich Low_complexity Low_complexity 3 60 0 1988 238 32 62 chr3 220655099 220655916 -6868662 - L1MC4a LINE L1 -13 7795 7004 895 225 128 53 chr3 220656438 220656969 -6867609 + MLT1E1 LTR MaLR 29 654 0 187 211 74 105 chr3 220657252 220657347 -6867231 - MIR3 SINE MIR -5 203 112 534 235 117 6 chr3 220657392 220657773 -6866805 - MER69 DNA AcHobo -12 2514 2055 1302 228 52 29 chr3 220657876 220658297 -6866281 - MER69 DNA AcHobo -748 478 48 361 336 32 0 chr3 220658403 220658528 -6866050 - MIR SINE MIR -130 132 4 183 292 0 0 chr3 220658557 220658629 -6865949 + (TATG)n Simple_repeat Simple_repeat 3 74 0 248 311 0 59 chr3 220659031 220659150 -6865428 + MIR SINE MIR 21 132 -76 219 275 125 0 chr3 220660110 220660190 -6864388 - L2 LINE L2 -20 3293 3204 301 205 12 0 chr3 220660441 220660524 -6864054 - MER69 DNA AcHobo -388 2138 2055 411 269 94 18 chr3 220661111 220661282 -6863296 - MER5A DNA MER1_type -1 188 5 375 239 0 11 chr3 220661312 220661400 -6863178 - MER5B DNA MER1_type -91 87 1 194 316 51 13 chr3 220661740 220661819 -6862759 - L2 LINE L2 -532 2782 2701 2244 97 0 34 chr3 220662175 220662495 -6862083 + AluSg1 SINE Alu 1 309 0 211 278 83 53 chr3 220664109 220664242 -6860336 - L3b LINE CR1 -257 1326 1190 575 312 61 71 chr3 220664245 220664459 -6860119 - L2 LINE L2 -2 3270 3060 2303 91 0 7 chr3 220664459 220664757 -6859821 + AluSg1 SINE Alu 1 296 -13 575 312 61 71 chr3 220664757 220664920 -6859658 - L2 LINE L2 -212 3060 2897 254 308 109 70 chr3 220664947 220665259 -6859319 - L2 LINE L2 -509 2805 2482 370 323 0 10 chr3 220665853 220665949 -6858629 + MIR SINE MIR 46 140 -68 482 250 42 8 chr3 220666109 220666229 -6858349 + MIR SINE MIR 16 139 -69 184 337 58 0 chr3 220666949 220667035 -6857543 + L2 LINE L2 3160 3250 -22 2316 90 0 7 chr3 220667573 220667872 -6856706 - AluSg SINE Alu -13 297 1 23 0 0 0 chr3 220668172 220668195 -6856383 + AT_rich Low_complexity Low_complexity 1 23 0 394 289 20 80 chr3 220669876 220670077 -6854501 + MER5A DNA MER1_type 1 189 0 254 315 116 24 chr3 220671331 220671623 -6852955 + L2 LINE L2 661 979 -2335 204 311 121 53 chr3 220671801 220671933 -6852645 + L2 LINE L2 3168 3308 -5 761 225 74 90 chr3 220672519 220672891 -6851687 - L1ME3 LINE L1 -71 6091 5717 217 353 139 8 chr3 220673312 220673434 -6851144 + MIR SINE MIR 17 154 -108 616 227 93 6 chr3 220673811 220673983 -6850595 + LTR41 LTR ERVL 1 187 -586 815 247 127 58 chr3 220674268 220674774 -6849804 + LTR41 LTR ERVL 235 795 0 212 244 67 0 chr3 220675968 220676013 -6848565 - MIR3 SINE MIR -146 62 15 693 298 49 7 chr3 220676407 220676692 -6847886 - L1ME3A LINE L1 -286 5867 5571 1367 279 23 19 chr3 220676692 220677265 -6847313 - L1ME3A LINE L1 -1979 4150 3576 316 308 37 9 chr3 220677319 220677426 -6847152 + MER91C DNA MER1_type 31 140 0 313 269 87 13 chr3 220677438 220677587 -6846991 - HAL1 LINE L1 -945 1562 1403 663 249 59 59 chr3 220677664 220678122 -6846456 - L1ME3A LINE L1 -4885 1234 777 2184 104 3 3 chr3 220678742 220679040 -6845538 - AluY SINE Alu -8 303 6 25 0 0 0 chr3 220679666 220679691 -6844887 + AT_rich Low_complexity Low_complexity 1 25 0 357 287 122 33 chr3 220680295 220680476 -6844102 - L1ME4a LINE L1 -224 5897 5701 272 120 0 0 chr3 220681271 220681321 -6843257 + L1MA3 LINE L1 6251 6300 -5 22 35 0 0 chr3 220681321 220681350 -6843228 + AT_rich Low_complexity Low_complexity 1 29 0 2441 108 8 3 chr3 220681589 220681942 -6842636 + THE1A LTR MaLR 1 355 0 11891 88 6 1 chr3 220681942 220683514 -6841064 + THE1A-int LTR MaLR 1 1580 0 2547 94 11 3 chr3 220683514 220683866 -6840712 + THE1A LTR MaLR 1 355 0 333 47 0 0 chr3 220684546 220684589 -6839989 + (TG)n Simple_repeat Simple_repeat 1 43 0 206 354 80 84 chr3 220684623 220684849 -6839729 - L2 LINE L2 -6 3266 3042 303 161 0 0 chr3 220685357 220685413 -6839165 + (TA)n Simple_repeat Simple_repeat 2 57 0 2362 84 0 3 chr3 220686414 220686712 -6837866 + AluSq SINE Alu 1 297 -16 22 0 0 0 chr3 220686830 220686852 -6837726 + AT_rich Low_complexity Low_complexity 1 22 0 2529 129 51 19 chr3 220686927 220687339 -6837239 + MSTC LTR MaLR 4 428 0 266 242 11 11 chr3 220687640 220687731 -6836847 + L1ME4a LINE L1 5812 5902 -219 2108 130 0 3 chr3 220687844 220688136 -6836442 + AluSx SINE Alu 1 291 -21 462 253 60 8 chr3 220688706 220688848 -6835730 - MER5B DNA MER1_type 0 178 30 3471 105 34 4 chr3 220688848 220689207 -6835371 - L1PB1 LINE L1 -2 6149 5768 420 20 0 0 chr3 220689207 220689256 -6835322 + (TG)n Simple_repeat Simple_repeat 1 49 0 3471 105 34 4 chr3 220689256 220689420 -6835158 - L1PB1 LINE L1 -383 5768 5610 1218 245 52 70 chr3 220690168 220690670 -6833908 + MER68 LTR ERV1 1 493 -69 1250 211 49 31 chr3 220690672 220690999 -6833579 - MER7A DNA MER2_type -3 343 13 768 262 52 95 chr3 220691230 220691584 -6832994 + MER68 LTR ERV1 152 487 -75 1474 198 44 32 chr3 220691584 220691923 -6832655 - MER7A DNA MER2_type -3 343 3 768 262 52 95 chr3 220691923 220691991 -6832587 + MER68 LTR ERV1 487 556 -6 183 301 75 91 chr3 220692269 220692468 -6832110 - MIR SINE MIR -56 206 11 454 327 39 13 chr3 220692844 220693000 -6831578 + MIR3 SINE MIR 46 205 -3 327 311 16 8 chr3 220693317 220693439 -6831139 - MIR SINE MIR -63 145 23 4371 219 26 48 chr3 220693791 220695120 -6829458 - L1MC4 LINE L1 -30 8012 6476 1902 142 0 3 chr3 220696962 220697277 -6827301 - AluSx SINE Alu 0 314 1 519 320 175 8 chr3 220697366 220697760 -6826818 + L2 LINE L2 2837 3296 -17 1374 211 143 23 chr3 220698102 220698537 -6826041 - MER97b DNA MER1_type? -405 648 162 1899 114 10 16 chr3 220698597 220698905 -6825673 - AluSc SINE Alu -3 306 1 190 291 126 83 chr3 220699320 220699550 -6825028 + L2 LINE L2 2813 3052 -261 255 261 39 120 chr3 220700327 220700610 -6823968 + MLT1I LTR MaLR 101 360 -49 21 36 0 0 chr3 220700744 220700772 -6823806 + AT_rich Low_complexity Low_complexity 1 28 0 341 371 72 18 chr3 220700845 220701066 -6823512 + MLT1K LTR MaLR 3 235 -353 2250 131 3 0 chr3 220701186 220701498 -6823080 + AluSq SINE Alu 1 313 0 251 197 14 42 chr3 220701616 220701687 -6822891 + LTR67 LTR ERVL 459 527 -30 417 46 65 37 chr3 220702450 220702558 -6822020 + (TAGA)n Simple_repeat Simple_repeat 4 114 0 247 325 227 7 chr3 220702852 220703006 -6821572 - MIR SINE MIR -72 190 3 223 267 0 70 chr3 220703370 220703456 -6821122 - L2 LINE L2 -523 2791 2712 635 289 116 11 chr3 220703630 220703983 -6820595 - LTR33 LTR ERVL -131 390 1 198 268 0 0 chr3 220704682 220704723 -6819855 + MIR SINE MIR 79 119 -89 498 259 84 24 chr3 220704803 220704969 -6819609 - MIR SINE MIR -82 180 5 424 290 52 44 chr3 220708167 220708439 -6816139 + MLT1K LTR MaLR 313 586 -2 29 60 0 0 chr3 220708804 220708854 -6815724 + AT_rich Low_complexity Low_complexity 1 50 0 2000 154 0 0 chr3 220708933 220709239 -6815339 + AluSx SINE Alu 1 306 -6 365 299 98 0 chr3 220709240 220709414 -6815164 + MIR SINE MIR 23 213 -49 213 39 0 0 chr3 220710897 220710923 -6813655 + (A)n Simple_repeat Simple_repeat 1 26 0 44 80 0 0 chr3 220711578 220711678 -6812900 + AT_rich Low_complexity Low_complexity 1 100 0 688 333 67 30 chr3 220712747 220713358 -6811220 - L2 LINE L2 0 3313 2678 598 240 20 88 chr3 220713483 220713579 -6810999 + Charlie8 DNA MER1_type 58 159 -2258 186 43 0 0 chr3 220713579 220713602 -6810976 + (TTA)n Simple_repeat Simple_repeat 2 24 0 598 240 20 88 chr3 220713602 220713755 -6810823 + Charlie8 DNA MER1_type 159 290 -2127 325 233 78 35 chr3 220714413 220714529 -6810049 + L2 LINE L2 3193 3313 0 237 337 76 0 chr3 220715979 220716071 -6808507 + MLT1L LTR MaLR 1 99 -516 1528 97 0 0 chr3 220716363 220716579 -6807999 + L1PA13 LINE L1 5944 6159 -4 247 276 0 0 chr3 220716942 220717000 -6807578 + L1ME3A LINE L1 5618 5675 -495 245 215 0 31 chr3 220717028 220717093 -6807485 + L1MC4 LINE L1 6641 6703 -1339 234 174 0 0 chr3 220717111 220717157 -6807421 + (CATATA)n Simple_repeat Simple_repeat 2 47 0 1145 266 43 25 chr3 220717157 220717609 -6806969 + L1ME3A LINE L1 5665 6142 -22 279 356 30 0 chr3 220718115 220718247 -6806331 + MIR SINE MIR 70 205 -57 225 313 61 30 chr3 220718917 220719048 -6805530 + MIR SINE MIR 71 205 -57 775 124 0 110 chr3 220720282 220720427 -6804151 - AluJb SINE Alu -130 182 54 319 254 196 22 chr3 220720542 220720680 -6803898 + MIR3 SINE MIR 41 202 -6 2751 119 21 2 chr3 220720884 220721304 -6803274 - MSTA LTR MaLR 0 428 1 559 317 207 9 chr3 220721598 220722018 -6802560 - L3 LINE CR1 -8 1569 1067 24 0 0 0 chr3 220722228 220722252 -6802326 + AT_rich Low_complexity Low_complexity 1 24 0 2185 113 0 0 chr3 220722254 220722545 -6802033 - AluSg SINE Alu -19 291 1 215 255 0 0 chr3 220722646 220722697 -6801881 + (TA)n Simple_repeat Simple_repeat 1 51 0 1568 188 18 0 chr3 220723066 220723348 -6801230 - AluJb SINE Alu -25 287 1 294 333 115 13 chr3 220723638 220723794 -6800784 - MER5A DNA MER1_type -5 184 13 2587 286 122 28 chr3 220723823 220725384 -6799194 + L2 LINE L2 1602 3313 0 461 315 33 16 chr3 220726537 220726724 -6797854 - MIR SINE MIR -44 218 30 180 351 67 37 chr3 220726731 220726865 -6797713 + MIR3 SINE MIR 32 169 -39 1689 138 0 64 chr3 220726931 220727242 -6797336 - AluY SINE Alu -20 291 1 944 224 34 49 chr3 220728115 220728378 -6796200 - MIR SINE MIR -3 259 1 181 306 297 9 chr3 220729208 220729319 -6795259 + L2 LINE L2 3125 3267 -5 28 48 0 0 chr3 220730650 220730692 -6793886 + AT_rich Low_complexity Low_complexity 1 42 0 1843 54 25 8 chr3 220730995 220731237 -6793341 - AluY SINE Alu -12 299 54 3102 149 6 2 chr3 220731237 220731747 -6792831 + L1PA15 LINE L1 5652 6163 -2 30 59 0 0 chr3 220733026 220733077 -6791501 + AT_rich Low_complexity Low_complexity 1 51 0 4532 147 45 61 chr3 220733139 220733745 -6790833 - MER49 LTR ERV1 -1 922 308 2055 137 0 9 chr3 220733745 220734060 -6790518 - AluSx SINE Alu 0 312 1 4532 147 45 61 chr3 220734060 220734281 -6790297 - MER49 LTR ERV1 -615 308 109 2468 60 0 3 chr3 220734281 220734580 -6789998 - AluY SINE Alu -13 298 1 4532 147 45 61 chr3 220734580 220734688 -6789890 - MER49 LTR ERV1 -814 109 1 459 63 0 0 chr3 220734723 220734786 -6789792 + (CA)n Simple_repeat Simple_repeat 2 64 0 35 24 0 0 chr3 220734786 220734828 -6789750 + AT_rich Low_complexity Low_complexity 1 42 0 342 250 14 0 chr3 220735104 220735176 -6789402 - 7SLRNA srpRNA srpRNA -230 90 18 647 317 103 19 chr3 220737349 220737661 -6786917 - MLT1I LTR MaLR -67 342 5 3901 169 16 4 chr3 220737661 220738365 -6786213 + L1MC1 LINE L1 5288 5999 -334 288 0 0 0 chr3 220738611 220738643 -6785935 + (CA)n Simple_repeat Simple_repeat 2 33 0 220 280 0 0 chr3 220739457 220739507 -6785071 + MIR SINE MIR 100 149 -59 243 226 0 32 chr3 220739818 220739880 -6784698 + MIR SINE MIR 203 262 0 * 374 314 53 21 chr3 220739860 220740048 -6784530 - MIR SINE MIR -48 214 21 228 35 0 0 chr3 220740218 220740247 -6784331 + (TA)n Simple_repeat Simple_repeat 1 29 0 22 35 0 0 chr3 220742289 220742318 -6782260 + GC_rich Low_complexity Low_complexity 1 29 0 197 200 210 30 chr3 220742829 220742929 -6781649 + MIR SINE MIR 17 134 -74 652 234 83 7 chr3 220743367 220743512 -6781066 + MIR SINE MIR 13 168 -94 363 281 174 40 chr3 220743633 220743886 -6780692 - L3 LINE CR1 -98 1479 1193 218 304 112 32 chr3 220744538 220744663 -6779915 + MIR SINE MIR 82 216 -46 24 67 0 0 chr3 220745483 220745528 -6779050 + AT_rich Low_complexity Low_complexity 1 45 0 196 155 17 17 chr3 220746280 220746338 -6778240 + CT-rich Low_complexity Low_complexity 3 60 0 5786 231 127 55 chr3 220746361 220747146 -6777432 - L1MC4a LINE L1 -13 7795 7068 183 100 0 0 chr3 220747146 220747176 -6777402 + (TTTA)n Simple_repeat Simple_repeat 4 33 0 5786 231 127 55 chr3 220747176 220748668 -6775910 - L1MC4a LINE L1 -740 7068 5354 2334 37 0 0 chr3 220749338 220749608 -6774970 + AluY SINE Alu 36 305 -6 248 342 87 22 chr3 220749720 220750135 -6774443 + L1MB7 LINE L1 5357 5798 -2010 250 333 70 26 chr3 220751425 220751539 -6773039 - MIR3 SINE MIR -54 154 36 246 239 30 30 chr3 220751850 220751917 -6772661 + HsTC2 DNA Tc2 1349 1415 -483 356 340 154 39 chr3 220752145 220753042 -6771536 + L2 LINE L2 1750 2749 -565 2185 110 3 0 chr3 220753157 220753458 -6771120 - AluSc SINE Alu -7 302 1 321 377 66 12 chr3 220753475 220753642 -6770936 + L2 LINE L2 2919 3094 -178 258 143 0 0 chr3 220753929 220753978 -6770600 + (CA)n Simple_repeat Simple_repeat 2 50 0 948 191 160 71 chr3 220754392 220754717 -6769861 + MLT1A2 LTR MaLR 19 372 -2 309 217 19 75 chr3 220755057 220755077 -6769501 - L1MA4A LINE L1 -23 6280 6260 2204 110 75 20 chr3 220755077 220755422 -6769156 - THE1B LTR MaLR 0 364 1 11081 100 25 0 chr3 220755422 220756964 -6767614 - THE1B-int LTR MaLR 0 1580 1 2041 123 85 15 chr3 220756964 220757304 -6767274 - THE1B LTR MaLR 0 364 1 309 217 19 75 chr3 220757304 220757387 -6767191 - L1MA4A LINE L1 -40 6263 6181 482 167 176 0 chr3 220757563 220757671 -6766907 - THE1B LTR MaLR -237 127 1 445 245 15 10 chr3 220757672 220757874 -6766704 - L1MA4A LINE L1 -39 6264 6001 265 331 76 7 chr3 220758017 220758162 -6766416 + MIR SINE MIR 107 261 -1 839 199 12 0 chr3 220758411 220758572 -6766006 + L1MB7 LINE L1 6002 6164 -20 2039 135 10 0 chr3 220758572 220758861 -6765717 - AluSx SINE Alu -20 292 1 278 318 144 36 chr3 220759041 220759236 -6765342 + MIR SINE MIR 30 245 -17 2967 194 9 6 chr3 220759692 220760352 -6764226 - L1 LINE L1 -1187 4959 4298 771 256 63 45 chr3 220761027 220761359 -6763219 - MER46C DNA MER2_type 0 338 1 678 144 0 0 chr3 220761756 220761860 -6762718 - U13 snRNA snRNA 0 104 1 21 36 0 0 chr3 220762044 220762072 -6762506 + AT_rich Low_complexity Low_complexity 1 28 0 1874 163 14 0 chr3 220762140 220762435 -6762143 - AluSx SINE Alu -9 303 5 1105 216 14 0 chr3 220763860 220764068 -6760510 + MER58A DNA MER1_type 13 223 -1 25 0 0 0 chr3 220764354 220764379 -6760199 + AT_rich Low_complexity Low_complexity 1 25 0 15698 156 47 38 chr3 220764412 220765697 -6758881 - L1MA3 LINE L1 -1 7723 6451 2226 104 0 3 chr3 220765697 220765994 -6758584 - AluSq SINE Alu -17 296 1 15698 156 47 38 chr3 220765994 220769717 -6754861 - L1MA3 LINE L1 -1273 6451 2289 1269 132 0 46 chr3 220769717 220769914 -6754664 - AluSx SINE Alu -124 188 1 15698 156 47 38 chr3 220769914 220772214 -6752364 - L1MA3 LINE L1 -5435 2289 12 295 354 0 0 chr3 220772468 220772564 -6752014 + MIR SINE MIR 2 97 -165 292 337 122 42 chr3 220773323 220773611 -6750967 + L3 LINE CR1 1171 1481 -96 711 319 37 4 chr3 220773814 220774055 -6750523 + MIR SINE MIR 1 249 -13 21 36 0 0 chr3 220774130 220774158 -6750420 + AT_rich Low_complexity Low_complexity 1 28 0 519 263 44 22 chr3 220774320 220774457 -6750121 + L2 LINE L2 3173 3312 -1 1857 151 0 7 chr3 220774508 220774799 -6749779 + AluJo SINE Alu 1 289 -23 319 379 39 7 chr3 220776087 220776240 -6748338 - MIR3 SINE MIR -17 191 34 2107 204 11 42 chr3 220777278 220777749 -6746829 + MLT2B1 LTR ERVL 8 463 -57 287 237 11 0 chr3 220777772 220777865 -6746713 + (TA)n Simple_repeat Simple_repeat 1 94 0 254 156 0 0 chr3 220777890 220777935 -6746643 + MLT2B1 LTR ERVL 1 45 -475 295 246 18 0 chr3 220777953 220778063 -6746515 + (TA)n Simple_repeat Simple_repeat 2 113 0 197 163 76 0 chr3 220778075 220778167 -6746411 + (TA)n Simple_repeat Simple_repeat 1 99 0 839 293 53 76 chr3 220778752 220780351 -6744227 + L1MEc LINE L1 32 1512 -4884 2003 158 0 0 chr3 220780351 220780654 -6743924 + AluSx SINE Alu 1 303 -9 839 293 53 76 chr3 220780654 220781247 -6743331 + L1MEc LINE L1 1512 2117 -4279 * 1018 302 33 19 chr3 220781245 220781653 -6742925 + L1M3d LINE L1 11 692 -5199 559 258 16 66 chr3 220781654 220781836 -6742742 + L1M3d LINE L1 186 358 -5533 2129 245 55 19 chr3 220782260 220783083 -6741495 + L1M3d LINE L1 388 1375 -4516 1845 145 0 48 chr3 220783246 220783557 -6741021 + AluSq SINE Alu 3 298 -15 11329 215 57 32 chr3 220783627 220786353 -6738225 + L1MC1 LINE L1 2078 4917 -1465 180 0 0 0 chr3 220786353 220786373 -6738205 + (CAA)n Simple_repeat Simple_repeat 2 21 0 11329 215 57 32 chr3 220786373 220787110 -6737468 + L1MC1 LINE L1 4917 5634 -748 1095 175 56 8 chr3 220787114 220787348 -6737230 + L1MC1 LINE L1 6183 6427 -142 585 61 0 12 chr3 220787322 220787409 -6737169 + L1PA3 LINE L1 6311 6403 -1 * 805 179 64 6 chr3 220787421 220787577 -6737001 + L1MC1 LINE L1 6394 6558 -11 1795 258 127 17 chr3 220787591 220788669 -6735909 + L1M3d LINE L1 2409 3605 -2365 955 183 47 0 chr3 220788667 220788858 -6735720 + L1MB5 LINE L1 5765 5964 -210 * 255 266 16 0 chr3 220788877 220788941 -6735637 + (CA)n Simple_repeat Simple_repeat 2 66 0 1897 239 44 77 chr3 220788943 220789109 -6735469 + L1ME2 LINE L1 5281 5451 -713 2403 81 0 0 chr3 220789109 220789404 -6735174 - AluY SINE Alu -14 297 3 1897 239 44 77 chr3 220789404 220790132 -6734446 + L1ME2 LINE L1 5451 6145 -19 26 0 0 0 chr3 220790292 220790318 -6734260 + AT_rich Low_complexity Low_complexity 1 26 0 447 111 42 0 chr3 220790482 220790554 -6734024 - AluS SINE Alu -15 294 220 305 234 121 78 chr3 220790817 220790958 -6733620 + L3 LINE CR1 1266 1412 -165 460 245 25 44 chr3 220791479 220791697 -6732881 + MIR SINE MIR 3 262 0 2199 92 0 0 chr3 220791778 220792108 -6732470 - AluSx SINE Alu 0 330 1 533 321 112 18 chr3 220792599 220792823 -6731755 + MIR SINE MIR 18 262 0 1234 133 50 157 chr3 220793155 220793549 -6731029 + MER7A DNA MER2_type 2 336 0 2227 97 3 0 chr3 220793549 220793837 -6730741 + AluSp SINE Alu 1 289 -24 444 279 17 89 chr3 220793859 220794038 -6730540 - MIR SINE MIR -94 168 3 24 0 0 0 chr3 220794535 220794559 -6730019 + AT_rich Low_complexity Low_complexity 1 24 0 968 259 105 21 chr3 220795252 220795475 -6729103 - MLT1C LTR MaLR -14 388 185 871 42 25 0 chr3 220795475 220795594 -6728984 + (TTTC)n Simple_repeat Simple_repeat 1 122 0 2104 101 4 0 chr3 220795595 220795871 -6728707 - AluSq SINE Alu -36 277 1 968 259 105 21 chr3 220795871 220796049 -6728529 - MLT1C LTR MaLR -216 186 6 230 289 244 0 chr3 220796156 220796246 -6728332 + MIR3 SINE MIR 47 158 -50 260 349 83 18 chr3 220796413 220796522 -6728056 - L2 LINE L2 -20 3252 3137 473 275 90 64 chr3 220796974 220797351 -6727227 - MLT1I LTR MaLR -7 402 22 533 239 79 9 chr3 220797369 220797514 -6727064 - MIR SINE MIR -63 145 13 388 339 48 90 chr3 220797538 220798169 -6726409 - L2 LINE L2 -534 2780 2177 22 80 0 0 chr3 220798544 220798594 -6725984 + AT_rich Low_complexity Low_complexity 1 50 0 23 0 0 0 chr3 220799682 220799705 -6724873 + AT_rich Low_complexity Low_complexity 1 23 0 21 0 0 0 chr3 220800654 220800675 -6723903 + AT_rich Low_complexity Low_complexity 1 21 0 1348 165 90 85 chr3 220801010 220801376 -6723202 + MLT2D LTR ERVL 1 371 -43 198 0 0 0 chr3 220801376 220801398 -6723180 + (TAAA)n Simple_repeat Simple_repeat 3 24 0 1348 165 90 85 chr3 220801398 220801443 -6723135 + MLT2D LTR ERVL 371 414 0 254 336 29 44 chr3 220801900 220802037 -6722541 - MIR3 SINE MIR -11 197 63 199 268 65 106 chr3 220802300 220802423 -6722155 + L2 LINE L2 2697 2814 -500 1155 157 19 32 chr3 220802506 220802722 -6721856 + MLT1F LTR MaLR 322 534 -8 533 205 26 40 chr3 220802730 220802881 -6721697 + L1ME1 LINE L1 5745 5893 -273 409 230 105 63 chr3 220802857 220803105 -6721473 + L1MA10 LINE L1 5926 6333 -1 * 408 88 0 0 chr3 220803230 220803287 -6721291 + (GGA)n Simple_repeat Simple_repeat 1 57 0 285 229 42 76 chr3 220804014 220804132 -6720446 - MIR SINE MIR -73 189 76 3476 66 4 2 chr3 220804498 220804954 -6719624 + L1PA7 LINE L1 5695 6151 -3 932 239 49 29 chr3 220805942 220806185 -6718393 - MIR SINE MIR -14 248 1 219 69 0 0 chr3 220807056 220807085 -6717493 + (CA)n Simple_repeat Simple_repeat 2 30 0 1770 133 3 57 chr3 220807307 220807607 -6716971 - AluSx SINE Alu -28 284 1 315 274 67 52 chr3 220807674 220807809 -6716769 - L2 LINE L2 0 3272 3136 2039 113 32 7 chr3 220808326 220808636 -6715942 - AluSx SINE Alu 0 312 1 290 228 210 0 chr3 220808696 220808858 -6715720 + L1ME LINE L1 5575 5770 -351 778 176 0 15 chr3 220809021 220809152 -6715426 + AluJb SINE Alu 1 129 -183 324 287 23 0 chr3 220809152 220809239 -6715339 - L1MC4 LINE L1 -1340 6702 6614 * 330 265 48 0 chr3 220809167 220809250 -6715328 + L1MC4 LINE L1 6614 6700 -1342 180 227 0 45 chr3 220812923 220812967 -6711611 - L2 LINE L2 -14 3258 3217 459 299 43 27 chr3 220814043 220814230 -6710348 + MIR SINE MIR 50 239 -23 1492 213 3 18 chr3 220815271 220815557 -6709021 + AluJo SINE Alu 1 282 -30 2499 57 0 16 chr3 220815801 220816117 -6708461 + AluY SINE Alu 1 311 0 24 0 0 0 chr3 220816136 220816160 -6708418 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr3 220816232 220816265 -6708313 + AT_rich Low_complexity Low_complexity 1 33 0 450 267 89 42 chr3 220816341 220816532 -6708046 - MIR SINE MIR -56 206 7 2225 100 0 0 chr3 220816797 220817086 -6707492 + AluSc SINE Alu 6 294 -15 219 333 0 0 chr3 220817500 220817566 -6707012 - MIR SINE MIR -61 147 82 232 294 41 41 chr3 220817711 220817857 -6706721 - MIR SINE MIR -97 165 20 194 358 0 0 chr3 220819361 220819428 -6705150 - L2 LINE L2 0 3313 3247 990 275 90 30 chr3 220820639 220821312 -6703266 + L2 LINE L2 2531 3313 0 261 349 83 18 chr3 220821926 220822035 -6702543 + L2 LINE L2 3137 3252 -20 233 289 244 0 chr3 220822202 220822292 -6702286 - MIR3 SINE MIR -50 158 47 448 211 108 30 chr3 220822398 220822564 -6702014 + MLT1D LTR MaLR 5 183 -322 2225 108 3 0 chr3 220822577 220822874 -6701704 + AluSx SINE Alu 1 298 -14 656 169 48 6 chr3 220822874 220823040 -6701538 - L1ME LINE L1 -709 5453 5281 255 266 16 0 chr3 220823042 220823106 -6701472 + (TG)n Simple_repeat Simple_repeat 2 66 0 894 183 47 0 chr3 220823125 220823316 -6701262 - L1MB5 LINE L1 -210 5964 5765 349 276 168 19 chr3 220823314 220823582 -6700996 - L1M4 LINE L1 -2365 3781 3474 * 950 231 98 15 chr3 220823703 220824236 -6700342 - L1M4 LINE L1 -2821 3325 2749 8628 173 13 23 chr3 220824337 220826269 -6698309 + L1 LINE L1 3084 4995 -1151 2152 113 0 0 chr3 220826292 220826583 -6697995 + AluSg SINE Alu 1 291 -19 24 0 0 0 chr3 220826585 220826609 -6697969 + AT_rich Low_complexity Low_complexity 1 24 0 475 318 34 17 chr3 220826819 220826998 -6697580 + L3 LINE CR1 1067 1248 -329 198 297 77 33 chr3 220827456 220827547 -6697031 - L2 LINE L2 -42 3230 3136 1919 52 0 13 chr3 220828064 220828324 -6696254 - AluY SINE Alu 0 311 60 1812 106 14 3 chr3 220828324 220828607 -6695971 + L1PA15 LINE L1 5648 5933 -232 331 280 65 0 chr3 220829368 220829475 -6695103 - L1ME4a LINE L1 -73 6048 5935 325 324 107 15 chr3 220829488 220829750 -6694828 - L1ME4a LINE L1 -217 5904 5619 2547 33 7 0 chr3 220830997 220831298 -6693280 + AluYa5 SINE Alu 1 303 -8 2317 88 0 52 chr3 220831304 220831632 -6692946 + AluY SINE Alu 1 311 0 216 0 0 0 chr3 220831633 220831657 -6692921 + (TA)n Simple_repeat Simple_repeat 2 25 0 204 373 45 15 chr3 220831672 220831806 -6692772 - MIR3 SINE MIR -39 169 32 457 315 33 16 chr3 220831813 220832000 -6692578 + MIR SINE MIR 30 218 -44 2184 62 0 34 chr3 220832501 220832821 -6691757 + AluY SINE Alu 3 311 0 24 0 0 0 chr3 220832840 220832864 -6691714 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr3 220832936 220832969 -6691609 + AT_rich Low_complexity Low_complexity 1 33 0 447 241 63 51 chr3 220833045 220833203 -6691375 - MIR SINE MIR -56 206 47 2025 99 0 45 chr3 220833510 220833823 -6690755 + AluSc SINE Alu 11 309 0 30 59 0 0 chr3 220834571 220834622 -6689956 + AT_rich Low_complexity Low_complexity 1 51 0 4410 153 45 60 chr3 220834684 220835289 -6689289 - MER49 LTR ERV1 -1 922 310 2063 140 0 9 chr3 220835289 220835604 -6688974 - AluSx SINE Alu 0 312 1 4410 153 45 60 chr3 220835604 220835825 -6688753 - MER49 LTR ERV1 -613 310 109 2409 70 0 3 chr3 220835825 220836124 -6688454 - AluY SINE Alu -13 298 1 4410 153 45 60 chr3 220836124 220836232 -6688346 - MER49 LTR ERV1 -814 109 1 285 229 42 76 chr3 220837472 220837590 -6686988 - MIR SINE MIR -73 189 76 298 208 6 79 chr3 220837958 220838136 -6686442 + L1P2 LINE L1 5696 5860 -294 188 273 61 0 chr3 220838486 220838552 -6686026 - MIR SINE MIR -75 187 118 1347 228 106 10 chr3 220838561 220838838 -6685740 - MLT1C LTR MaLR 0 467 133 2138 125 0 0 chr3 220838838 220839160 -6685418 - AluSx SINE Alu 0 322 1 1347 228 106 10 chr3 220839160 220839297 -6685281 - MLT1C LTR MaLR -334 133 11 210 138 52 17 chr3 220839932 220839990 -6684588 + CT-rich Low_complexity Low_complexity 4 63 0 258 290 32 0 chr3 220839991 220840050 -6684528 + (CATA)n Simple_repeat Simple_repeat 3 68 -30 1355 168 119 13 chr3 220840050 220840360 -6684218 - MER2 DNA MER2_type 0 344 2 258 290 32 0 chr3 220840360 220840393 -6684185 + (CATA)n Simple_repeat Simple_repeat 68 98 0 34 93 0 0 chr3 220840506 220840603 -6683975 + AT_rich Low_complexity Low_complexity 1 97 0 2231 112 0 0 chr3 220840676 220840972 -6683606 - AluSx SINE Alu -15 297 2 183 277 106 0 chr3 220841663 220841710 -6682868 - L3 LINE CR1 0 1577 1526 562 218 162 28 chr3 220842064 220842243 -6682335 - MER3 DNA MER1_type 0 209 7 346 204 61 51 chr3 220843275 220843373 -6681205 + MIR SINE MIR 45 143 -119 190 194 0 0 chr3 220843454 220843485 -6681093 - MIR3 SINE MIR -10 198 168 182 349 167 0 chr3 220843690 220843816 -6680762 - MIR3 SINE MIR -48 160 14 231 170 0 0 chr3 220843904 220843951 -6680627 + (TG)n Simple_repeat Simple_repeat 2 48 0 259 269 64 0 chr3 220844468 220844546 -6680032 - MIR SINE MIR -50 212 130 2564 196 5 1 chr3 220844783 220845405 -6679173 + L1MA9 LINE L1 5162 5785 -527 855 163 98 0 chr3 220845407 220845591 -6678987 - MER2 DNA MER2_type 0 345 144 1311 222 76 42 chr3 220845678 220846151 -6678427 + L1MA9 LINE L1 5786 6274 -38 24 32 0 0 chr3 220846151 220846182 -6678396 + AT_rich Low_complexity Low_complexity 1 31 0 283 276 31 31 chr3 220846385 220846512 -6678066 + L1MA9 LINE L1 6148 6274 -38 30 27 0 0 chr3 220846512 220846549 -6678029 + AT_rich Low_complexity Low_complexity 1 37 0 275 346 23 15 chr3 220846663 220846793 -6677785 - MIR3 SINE MIR 0 208 78 1010 242 64 52 chr3 220846894 220846967 -6677611 + MER58B DNA MER1_type 7 78 -2342 1435 173 71 8 chr3 220846967 220847271 -6677307 - AluJo SINE Alu 0 321 1 2772 13 0 0 chr3 220847277 220847580 -6676998 - AluYa5 SINE Alu -8 303 1 2413 86 0 3 chr3 220847580 220847881 -6676697 - AluSp SINE Alu -13 300 1 1010 242 64 52 chr3 220847881 220848127 -6676451 + MER58B DNA MER1_type 81 340 -1 250 281 135 43 chr3 220848367 220848552 -6676026 - MIR SINE MIR -43 219 18 234 336 100 9 chr3 220849461 220849571 -6675007 - MIR3 SINE MIR 0 208 89 21 57 0 0 chr3 220849905 220849940 -6674638 + AT_rich Low_complexity Low_complexity 1 35 0 209 359 0 0 chr3 220850769 220850847 -6673731 - MIR SINE MIR 0 262 185 378 386 19 9 chr3 220851055 220851265 -6673313 - L2 LINE L2 -192 3080 2869 585 372 89 12 chr3 220851292 220851854 -6672724 - L2 LINE L2 -509 2805 2201 560 278 97 118 chr3 220851858 220852351 -6672227 - L2 LINE L2 -5 3308 2826 216 0 0 0 chr3 220852389 220852413 -6672165 + (CAAT)n Simple_repeat Simple_repeat 3 26 0 1971 196 19 5 chr3 220852649 220853072 -6671506 + L1MB7 LINE L1 5754 6182 -2 180 227 0 45 chr3 220854948 220854992 -6669586 - L2 LINE L2 -14 3258 3217 466 299 43 27 chr3 220856068 220856255 -6668323 + MIR SINE MIR 50 239 -23 1465 213 3 18 chr3 220857296 220857582 -6666996 + AluJo SINE Alu 1 282 -30 2494 57 0 16 chr3 220857826 220858142 -6666436 + AluY SINE Alu 1 311 0 24 0 0 0 chr3 220858161 220858185 -6666393 + AT_rich Low_complexity Low_complexity 1 24 0 26 30 0 0 chr3 220858257 220858290 -6666288 + AT_rich Low_complexity Low_complexity 1 33 0 457 267 89 42 chr3 220858366 220858557 -6666021 - MIR SINE MIR -56 206 7 2232 97 0 0 chr3 220858822 220859110 -6665468 + AluSc SINE Alu 6 293 -16 215 333 0 0 chr3 220859524 220859590 -6664988 - MIR SINE MIR -61 147 82 228 294 41 41 chr3 220859735 220859881 -6664697 - MIR SINE MIR -97 165 20 194 358 0 0 chr3 220861385 220861452 -6663126 - L2 LINE L2 0 3313 3247 969 287 92 27 chr3 220862663 220863333 -6661245 + L2 LINE L2 2531 3313 0 1114 214 29 114 chr3 220864170 220864274 -6660304 + LTR37B LTR ERV1 1 112 -356 1160 176 189 48 chr3 220864274 220864649 -6659929 + MSTC LTR MaLR 1 428 0 1114 214 29 114 chr3 220864649 220865054 -6659524 + LTR37B LTR ERV1 112 467 -1 308 290 94 7 chr3 220865054 220865159 -6659419 + Charlie8 DNA MER1_type 171 287 -2130 1124 181 5 0 chr3 220865264 220865452 -6659126 - MER5A DNA MER1_type 0 189 1 1776 170 11 0 chr3 220865575 220865857 -6658721 + AluSx SINE Alu 1 285 -27 753 12 0 0 chr3 220865857 220865943 -6658635 + (TATAA)n Simple_repeat Simple_repeat 4 89 0 457 309 11 48 chr3 220866233 220866421 -6658157 - MIR SINE MIR -46 216 36 246 340 51 90 chr3 220866705 220866961 -6657617 + MIR SINE MIR 11 256 -6 250 200 62 31 chr3 220868412 220868477 -6656101 - MER5A DNA MER1_type -80 109 43 3242 63 5 0 chr3 220868642 220869098 -6655480 + L1PA7 LINE L1 5725 6182 0 394 283 22 122 chr3 220869108 220869338 -6655240 + MIR SINE MIR 31 237 -25 422 259 78 31 chr3 220869447 220869640 -6654938 - L2 LINE L2 0 3313 3112 234 179 89 0 chr3 220869642 220869698 -6654880 + L1MC1 LINE L1 5916 5976 -368 * 3093 177 15 13 chr3 220869697 220870296 -6654282 - L1MA5A LINE L1 -989 5157 4558 6418 123 18 4 chr3 220870297 220871399 -6653179 + L1MA5A LINE L1 5180 6297 0 1734 165 30 38 chr3 220871399 220871483 -6653095 + L1MC1 LINE L1 5961 6044 -289 1758 174 68 0 chr3 220871483 220871805 -6652773 + MER2 DNA MER2_type 1 344 0 1734 165 30 38 chr3 220871805 220872090 -6652488 + L1MC1 LINE L1 6044 6327 -6 285 310 44 9 chr3 220872153 220872266 -6652312 - L2 LINE L2 -216 3097 2981 3499 200 8 15 chr3 220872525 220873281 -6651297 + L1 LINE L1 3671 4421 -1725 4629 65 25 5 chr3 220873282 220874294 -6650284 - MER11A LTR ERVK 0 1266 1 2948 198 33 0 chr3 220874301 220874907 -6649671 + L1PA16 LINE L1 4420 5045 -1101 1733 140 3 57 chr3 220874908 220875208 -6649370 + AluSx SINE Alu 1 284 -28 219 69 0 0 chr3 220875430 220875459 -6649119 + (TG)n Simple_repeat Simple_repeat 2 30 0 931 239 49 29 chr3 220876333 220876576 -6648002 + MIR SINE MIR 1 248 -14 23 33 0 0 chr3 220877448 220877478 -6647100 + GC_rich Low_complexity Low_complexity 1 30 0 5432 128 8 11 chr3 220877542 220878468 -6646110 + L1PA16 LINE L1 5256 6157 -9 23 0 0 0 chr3 220878468 220878491 -6646087 + AT_rich Low_complexity Low_complexity 1 23 0 525 298 85 38 chr3 220878499 220878734 -6645844 - MIR SINE MIR -2 260 15 187 265 214 17 chr3 220879414 220879531 -6645047 + MIR SINE MIR 117 256 -6 23 0 0 0 chr3 220879772 220879795 -6644783 + AT_rich Low_complexity Low_complexity 1 23 0 324 231 138 46 chr3 220879805 220879935 -6644643 - MIR SINE MIR 0 262 121 2928 106 11 5 chr3 220879942 220880385 -6644193 + L1MA3 LINE L1 5860 6305 0 284 333 9 18 chr3 220882072 220882183 -6642395 - L3 LINE CR1 -1 1576 1467 1306 269 158 18 chr3 220882393 220883073 -6641505 + L2 LINE L2 2541 3312 -1 277 246 14 14 chr3 220883361 220883430 -6641148 - L2 LINE L2 -1 3312 3244 183 390 12 0 chr3 220883488 220883570 -6641008 - MER5B DNA MER1_type 0 178 96 195 42 0 0 chr3 220885028 220885052 -6639526 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 21 36 0 0 chr3 220885531 220885559 -6639019 + AT_rich Low_complexity Low_complexity 1 28 0 444 323 101 14 chr3 220887512 220887788 -6636790 + L1ME4a LINE L1 5605 5904 -217 226 280 65 0 chr3 220887801 220887908 -6636670 + L1ME4a LINE L1 5935 6048 -73 284 357 30 40 chr3 220888818 220889017 -6635561 + L3 LINE CR1 1175 1371 -206 387 296 176 7 chr3 220889526 220889668 -6634910 - MER5A DNA MER1_type -7 182 17 287 339 164 0 chr3 220889953 220890118 -6634460 + L3 LINE CR1 1385 1576 -1 21 0 0 0 chr3 220890177 220890198 -6634380 + AT_rich Low_complexity Low_complexity 1 21 0 183 80 0 0 chr3 220890391 220890416 -6634162 + (GGAA)n Simple_repeat Simple_repeat 3 27 0 204 286 86 0 chr3 220890765 220890835 -6633743 - L2 LINE L2 -10 3262 3187 231 167 0 0 chr3 220892203 220892245 -6632333 + (CA)n Simple_repeat Simple_repeat 2 43 0 348 322 140 14 chr3 220893358 220893572 -6631006 + MIR SINE MIR 2 242 -20 207 0 0 0 chr3 220893660 220893683 -6630895 + (A)n Simple_repeat Simple_repeat 1 23 0 284 331 99 0 chr3 220894525 220894646 -6629932 + MIR SINE MIR 57 189 -73 195 114 0 0 chr3 220894749 220894784 -6629794 + (CA)n Simple_repeat Simple_repeat 1 35 0 203 308 48 39 chr3 220895025 220895129 -6629449 - L2 LINE L2 0 3272 3168 241 273 0 0 chr3 220896402 220896457 -6628121 + GA-rich Low_complexity Low_complexity 2 56 0 1299 268 80 15 chr3 220896938 220897455 -6627123 - L1MC4a LINE L1 -720 5431 5341 1565 181 30 10 chr3 220898575 220898878 -6625700 - AluJo SINE Alu -3 309 1 260 257 95 0 chr3 220899079 220899153 -6625425 - MIR SINE MIR -107 155 75 26 30 0 0 chr3 220899190 220899223 -6625355 + AT_rich Low_complexity Low_complexity 1 33 0 29 47 0 0 chr3 220899273 220899316 -6625262 + AT_rich Low_complexity Low_complexity 1 43 0 354 286 133 51 chr3 220899316 220899550 -6625028 - L1ME LINE L1 -375 5746 5494 3039 200 77 14 chr3 220899634 220899812 -6624766 - L1MD2 LINE L1 -10 6349 6184 309 51 0 0 chr3 220899812 220899851 -6624727 + (TG)n Simple_repeat Simple_repeat 2 40 0 3039 200 77 14 chr3 220899851 220900407 -6624171 - L1MD2 LINE L1 -175 6184 5539 372 22 0 0 chr3 220900414 220900459 -6624119 + (CA)n Simple_repeat Simple_repeat 2 46 0 183 204 0 0 chr3 220900459 220900503 -6624075 + (TA)n Simple_repeat Simple_repeat 1 44 0 363 171 0 0 chr3 220900647 220900723 -6623855 + (TA)n Simple_repeat Simple_repeat 1 76 0 287 122 0 0 chr3 220900736 220900777 -6623801 + MADE1 DNA Mariner 3 43 -37 357 62 21 0 chr3 220900811 220900859 -6623719 + MLT2C2 LTR ERVL 416 464 0 297 274 0 0 chr3 220900931 220900993 -6623585 + MIR SINE MIR 67 128 -80 336 271 38 53 chr3 220901751 220901884 -6622694 - MER5A DNA MER1_type -22 167 37 2823 122 9 2 chr3 220901903 220902328 -6622250 + MSTA LTR MaLR 1 428 0 234 357 120 0 chr3 220902368 220902500 -6622078 - MIR SINE MIR -57 151 4 2503 46 0 20 chr3 220902523 220902827 -6621751 - AluY SINE Alu -13 298 1 24 0 0 0 chr3 220904564 220904588 -6619990 + GC_rich Low_complexity Low_complexity 1 24 0 468 385 0 0 chr3 220904595 220904764 -6619814 + C-rich Low_complexity Low_complexity 1 169 0 308 321 15 15 chr3 220904736 220904873 -6619705 + (CCCCG)n Simple_repeat Simple_repeat 2 138 0 * 228 340 0 42 chr3 220904915 220905059 -6619519 + C-rich Low_complexity Low_complexity 2 139 0 297 319 48 12 chr3 220905205 220905371 -6619207 - L2 LINE L2 -942 2372 2201 609 274 95 121 chr3 220905375 220905871 -6618707 - L2 LINE L2 -5 3308 2826 216 0 0 0 chr3 220905909 220905933 -6618645 + (CAAT)n Simple_repeat Simple_repeat 3 26 0 2147 196 19 7 chr3 220906170 220906594 -6617984 + L1MB7 LINE L1 5754 6182 -2 21 0 0 0 chr3 220907145 220907166 -6617412 + AT_rich Low_complexity Low_complexity 1 21 0 234 238 0 0 chr3 220907357 220907420 -6617158 + L1MC4 LINE L1 6641 6703 -1339 269 148 0 19 chr3 220907424 220907478 -6617100 + (TA)n Simple_repeat Simple_repeat 1 53 0 282 346 0 40 chr3 220907646 220907832 -6616746 - MIR SINE MIR -57 205 30 231 125 0 0 chr3 220907859 220907899 -6616679 + (TTA)n Simple_repeat Simple_repeat 2 41 0 1396 180 20 30 chr3 220909246 220909541 -6615037 - AluSx SINE Alu -3 309 18 246 338 69 82 chr3 220909813 220910408 -6614170 + L2 LINE L2 2684 3268 -4 31 0 0 0 chr3 220910454 220910485 -6614093 + AT_rich Low_complexity Low_complexity 1 31 0 333 266 89 24 chr3 220910974 220911098 -6613480 + MIR3 SINE MIR 73 204 -4 24 53 0 0 chr3 220911216 220911254 -6613324 + AT_rich Low_complexity Low_complexity 1 38 0 241 317 127 7 chr3 220911443 220911585 -6612993 - MIR SINE MIR -50 212 54 350 274 88 10 chr3 220911702 220911804 -6612774 - L2 LINE L2 0 3313 3204 1000 237 0 5 chr3 220912265 220912451 -6612127 + MER5A DNA MER1_type 5 189 0 2176 95 0 36 chr3 220913418 220913723 -6610855 - AluSx SINE Alu -18 294 1 533 272 156 68 chr3 220914855 220915322 -6609256 + MLT1J LTR MaLR 1 508 -3 198 0 0 0 chr3 220915738 220915760 -6608818 + (A)n Simple_repeat Simple_repeat 1 22 0 191 279 16 16 chr3 220915772 220915833 -6608745 + L2 LINE L2 3209 3269 -3 360 0 0 0 chr3 220915978 220916018 -6608560 + (CA)n Simple_repeat Simple_repeat 2 41 0 898 120 44 77 chr3 220916159 220916342 -6608236 + MER20 DNA MER1_type 1 177 -42 189 354 62 0 chr3 220918602 220918698 -6605880 - L2 LINE L2 -39 3233 3132 2573 34 5 1 chr3 220919371 220919680 -6604898 - L1P2 LINE L1 -531 5624 5313 292 77 0 0 chr3 220919666 220919705 -6604873 - L1P2 LINE L1 -485 5669 5631 * 4755 27 0 0 chr3 220919705 220920217 -6604361 + L1PA4 LINE L1 5632 6154 -1 31 26 0 0 chr3 220920676 220920714 -6603864 + AT_rich Low_complexity Low_complexity 1 38 0 2077 113 3 14 chr3 220920934 220921227 -6603351 + AluSx SINE Alu 1 290 -22 233 328 0 0 chr3 220921556 220921623 -6602955 + MIR SINE MIR 37 103 -159 218 184 0 41 chr3 220921795 220921844 -6602734 + A-rich Low_complexity Low_complexity 2 48 0 23 33 0 0 chr3 220922501 220922531 -6602047 + AT_rich Low_complexity Low_complexity 1 30 0 185 350 62 12 chr3 220922604 220922684 -6601894 + MIR SINE MIR 40 123 -85 294 274 29 29 chr3 220923010 220923112 -6601466 + MIR SINE MIR 149 250 -12 244 282 129 37 chr3 220923566 220923729 -6600849 - MIR SINE MIR -23 239 62 2005 100 3 57 chr3 220924161 220924460 -6600118 + AluSx SINE Alu 1 283 -29 3010 73 11 48 chr3 220925056 220925493 -6599085 + L1PA8 LINE L1 5749 6169 -3 240 326 98 0 chr3 220926308 220926400 -6598178 - MIR3 SINE MIR -19 189 89 539 53 13 0 chr3 220926581 220926656 -6597922 + (TAGA)n Simple_repeat Simple_repeat 1 76 0 350 351 128 28 chr3 220926766 220927017 -6597561 - L2 LINE L2 0 3272 2997 1753 124 0 26 chr3 220927018 220927283 -6597295 + AluSx SINE Alu 1 258 -54 483 282 98 12 chr3 220928198 220928361 -6596217 - MIR3 SINE MIR -31 177 1 431 295 23 17 chr3 220928965 220929138 -6595440 - MER46C DNA MER2_type -11 327 154 475 331 0 0 chr3 220929181 220929353 -6595225 + C-rich Low_complexity Low_complexity 1 172 0 285 245 0 0 chr3 220929376 220929515 -6595063 + C-rich Low_complexity Low_complexity 1 139 0 317 301 12 23 chr3 220929569 220929742 -6594836 + C-rich Low_complexity Low_complexity 3 173 0 24 0 0 0 chr3 220929970 220929994 -6594584 + AT_rich Low_complexity Low_complexity 1 24 0 5254 125 6 6 chr3 220930049 220930850 -6593728 + L1PA16 LINE L1 5357 6157 -9 23 0 0 0 chr3 220930850 220930873 -6593705 + AT_rich Low_complexity Low_complexity 1 23 0 505 298 85 38 chr3 220930881 220931116 -6593462 - MIR SINE MIR -2 260 15 7914 101 16 3 chr3 220931930 220933089 -6591489 - L1P LINE L1 -1016 5130 3956 1037 228 4 15 chr3 220933095 220933367 -6591211 - AluSc SINE Alu -1 308 40 365 62 21 0 chr3 220935116 220935164 -6589414 - MLT2C2 LTR ERVL 0 464 416 295 122 0 0 chr3 220935198 220935239 -6589339 - MADE1 DNA Mariner -37 43 3 363 171 0 0 chr3 220935252 220935328 -6589250 + (TA)n Simple_repeat Simple_repeat 1 76 0 192 200 0 0 chr3 220935471 220935516 -6589062 + (TA)n Simple_repeat Simple_repeat 1 45 0 288 179 21 55 chr3 220935559 220935704 -6588874 + (CCCG)n Simple_repeat Simple_repeat 1 140 0 244 161 51 42 chr3 220935649 220935767 -6588811 + (CCGG)n Simple_repeat Simple_repeat 3 121 0 * 222 402 10 0 chr3 220935816 220935913 -6588665 + C-rich Low_complexity Low_complexity 2 99 0 483 261 25 25 chr3 220936337 220936494 -6588084 - L1ME LINE L1 -337 5784 5628 520 340 104 48 chr3 220936642 220936810 -6587768 + L2 LINE L2 2828 2985 -287 2130 109 10 22 chr3 220936810 220937122 -6587456 - AluSx SINE Alu -4 308 1 520 340 104 48 chr3 220937122 220937374 -6587204 + L2 LINE L2 2985 3272 0 33 25 0 0 chr3 220940429 220940469 -6584109 + AT_rich Low_complexity Low_complexity 1 40 0 24 53 0 0 chr3 220940522 220940560 -6584018 + AT_rich Low_complexity Low_complexity 1 38 0 180 0 0 0 chr3 220940560 220940580 -6583998 + (A)n Simple_repeat Simple_repeat 1 20 0 29 0 0 0 chr3 220940651 220940680 -6583898 + AT_rich Low_complexity Low_complexity 1 29 0 376 291 7 14 chr3 220941635 220941783 -6582795 + C-rich Low_complexity Low_complexity 3 149 0 882 47 0 0 chr3 220942007 220942135 -6582443 + AluY SINE Alu 178 305 0 2111 124 7 0 chr3 220942323 220942621 -6581957 - AluSc SINE Alu -9 300 1 2049 101 4 4 chr3 220943853 220944130 -6580448 + AluSx SINE Alu 1 277 -35 195 42 0 0 chr3 220944137 220944161 -6580417 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 207 337 81 32 chr3 220945057 220945336 -6579242 - L2 LINE L2 -271 3001 2711 494 275 23 23 chr3 220945366 220945537 -6579041 + L1ME LINE L1 5628 5798 -323 369 295 145 31 chr3 220946412 220946639 -6577939 + L1MEd LINE L1 819 1071 -5048 1963 130 0 59 chr3 220946723 220947045 -6577533 + AluSc SINE Alu 7 309 0 656 253 44 6 chr3 220947048 220947206 -6577372 + Charlie1 DNA MER1_type 15 178 -2583 * 2884 200 49 5 chr3 220947200 220947870 -6576708 + Charlie1 DNA MER1_type 2055 2754 -7 200 260 137 41 chr3 220948956 220949029 -6575549 + MIR SINE MIR 70 149 -113 369 43 0 0 chr3 220949188 220949235 -6575343 + (CA)n Simple_repeat Simple_repeat 2 48 0 465 335 24 4 chr3 220949370 220949527 -6575051 - MIR3 SINE MIR -42 166 2 197 348 22 34 chr3 220950266 220950355 -6574223 - L2 LINE L2 -9 3304 3217 4370 100 9 3 chr3 220950802 220951380 -6573198 - L1PA10 LINE L1 -11 6157 5577 198 191 24 0 chr3 220951536 220951578 -6573000 - MIR SINE MIR -67 195 153 25 31 0 0 chr3 220952000 220952032 -6572546 + AT_rich Low_complexity Low_complexity 1 32 0 339 292 42 0 chr3 220952831 220952927 -6571651 + MER94 DNA DNA 1 100 -34 316 182 17 0 chr3 220953016 220953086 -6571492 - MIR SINE MIR -67 141 82 319 263 103 69 chr3 220953722 220953897 -6570681 - MIR3 SINE MIR -7 201 21 2249 199 59 14 chr3 220953956 220954398 -6570180 + MLT1C LTR MaLR 3 464 -3 833 254 25 25 chr3 220955534 220955770 -6568808 - MIR SINE MIR -19 243 8 680 235 100 12 chr3 220956292 220956462 -6568116 - MER5A DNA MER1_type 0 189 5 1735 166 0 28 chr3 220956727 220957017 -6567561 + AluJb SINE Alu 1 282 -30 190 361 42 17 chr3 220958045 220958164 -6566414 + MIR3 SINE MIR 63 184 -24 239 278 165 10 chr3 220958192 220958289 -6566289 - L2 LINE L2 0 3313 3202 180 289 115 29 chr3 220959343 220959447 -6565131 - MIR3 SINE MIR -3 205 93 544 247 55 20 chr3 220959805 220959951 -6564627 + MIR3 SINE MIR 47 197 -11 1048 278 72 73 chr3 220960020 220960715 -6563863 + MER21B LTR ERV1 21 714 -149 241 357 19 39 chr3 220961465 220961619 -6562959 - MER5A DNA MER1_type -28 161 11 741 215 59 55 chr3 220962308 220962470 -6562108 + MIR SINE MIR 36 201 -61 2323 76 3 3 chr3 220962470 220962761 -6561817 - AluY SINE Alu -20 291 1 741 215 59 55 chr3 220962761 220962817 -6561761 + MIR SINE MIR 201 255 -7 247 284 71 47 chr3 220963180 220963349 -6561229 - MIR SINE MIR -27 235 63 351 103 0 0 chr3 220964147 220964205 -6560373 + L1PA8 LINE L1 6107 6164 -8 2429 80 0 3 chr3 220964227 220964539 -6560039 - AluY SINE Alu 0 311 1 338 289 224 59 chr3 220964963 220965589 -6558989 + L1M2 LINE L1 1453 2181 -5385 422 266 23 34 chr3 220965782 220965959 -6558619 + L1M2 LINE L1 2305 2479 -5010 331 176 0 0 chr3 220965960 220966011 -6558567 + 5S rRNA rRNA 1 51 -70 11029 218 45 39 chr3 220966014 220966079 -6558499 + L1MA9 LINE L1 2260 2323 -5408 4042 142 27 6 chr3 220966079 220966782 -6557796 + L1MA4A LINE L1 5572 6289 -14 11029 218 45 39 chr3 220966782 220969834 -6554744 + L1MA9 LINE L1 2323 5295 -2436 1668 184 3 23 chr3 220969834 220970138 -6554440 + AluJb SINE Alu 1 298 -14 11029 218 45 39 chr3 220970138 220972552 -6552026 + L1MA9 LINE L1 5295 7693 -38 1849 167 0 3 chr3 220973226 220973508 -6551070 + AluSx SINE Alu 1 281 -31 291 365 12 18 chr3 220973958 220974150 -6550428 + MIR SINE MIR 8 195 -67 238 164 224 0 chr3 220974170 220974237 -6550341 - MER5A DNA MER1_type -83 106 25 1158 277 69 47 chr3 220975122 220975588 -6548990 + L2 LINE L2 2838 3313 0 216 368 118 7 chr3 220975729 220975881 -6548697 + MIR3 SINE MIR 30 198 -10 230 275 40 74 chr3 220975928 220976077 -6548501 - L2 LINE L2 -15 3298 3155 311 357 54 32 chr3 220977442 220977627 -6546951 - L3b LINE CR1 -268 1315 1127 4367 154 87 11 chr3 220978042 220978881 -6545697 + MER4D LTR ERV1 1 903 0 2372 151 66 29 chr3 220979180 220979725 -6544853 - L1MA9 LINE L1 -42 6270 5706 1513 164 9 62 chr3 220979921 220980244 -6544334 + AluJb SINE Alu 1 306 -6 27 0 0 0 chr3 220980518 220980545 -6544033 + AT_rich Low_complexity Low_complexity 1 27 0 2906 149 6 2 chr3 220980691 220981173 -6543405 - Tigger1 DNA MER2_type 0 2418 1935 979 158 0 23 chr3 220981173 220981350 -6543228 + THE1C LTR MaLR 1 173 -202 769 227 0 19 chr3 220981366 220981520 -6543058 - AluJo SINE Alu -149 163 13 8343 128 18 105 chr3 220981520 220983337 -6541241 - Tigger1 DNA MER2_type -736 1682 23 218 333 46 35 chr3 220983843 220984017 -6540561 - MIR3 SINE MIR -25 183 8 243 263 54 25 chr3 220984140 220984269 -6540309 - MIR SINE MIR -50 212 78 2327 110 0 0 chr3 220984991 220985291 -6539287 + AluSc SINE Alu 1 300 -9 19040 125 11 31 chr3 220985587 220989127 -6535451 + L1P3 LINE L1 768 4262 -2199 2296 94 7 3 chr3 220989127 220989435 -6535143 + AluSc SINE Alu 1 309 0 19040 125 11 31 chr3 220989435 220989564 -6535014 + L1P3 LINE L1 4262 4392 -2069 190 375 78 16 chr3 220990388 220990516 -6534062 + L2 LINE L2 3136 3271 -1 4302 276 73 46 chr3 220990829 220991751 -6532827 + HAL1 LINE L1 3 899 -1608 5566 68 18 9 chr3 220991751 220992488 -6532090 + SVA Other Other 643 1385 -1 4302 276 73 46 chr3 220992488 220993959 -6530619 + HAL1 LINE L1 899 2459 -48 654 284 47 13 chr3 220994572 220994808 -6529770 - MIR SINE MIR 0 262 19 2718 23 0 0 chr3 220995039 220995343 -6529235 - AluYa5 SINE Alu -7 304 1 200 283 33 33 chr3 220995856 220995916 -6528662 + L2 LINE L2 3235 3294 -19 201 353 118 0 chr3 220995965 220996067 -6528511 + L2 LINE L2 2924 3037 -235 588 206 53 38 chr3 220996623 220996754 -6527824 + MER5A DNA MER1_type 7 139 -50 990 167 162 0 chr3 220997751 220997949 -6526629 + MIR SINE MIR 12 241 -21 222 37 0 0 chr3 220998683 220998710 -6525868 + (T)n Simple_repeat Simple_repeat 1 27 0 313 316 115 23 chr3 220998994 220999168 -6525410 - MIR3 SINE MIR -17 191 2 222 91 0 0 chr3 221000311 221000344 -6524234 + (A)n Simple_repeat Simple_repeat 1 33 0 195 373 68 17 chr3 221001650 221001768 -6522810 - L2 LINE L2 -39 3233 3110 206 320 155 0 chr3 221002654 221002757 -6521821 - MIR SINE MIR -58 150 32 273 293 75 28 chr3 221003354 221003460 -6521118 + L2 LINE L2 3157 3267 -5 613 228 161 0 chr3 221003971 221004120 -6520458 - MER5A DNA MER1_type 0 189 17 537 269 23 29 chr3 221004139 221004310 -6520268 + MER5B DNA MER1_type 1 170 -8 862 139 11 21 chr3 221004387 221004667 -6519911 + GA-rich Low_complexity Low_complexity 1 276 0 256 333 207 0 chr3 221004693 221004804 -6519774 - MER5A DNA MER1_type -3 186 53 358 272 77 30 chr3 221004842 221005011 -6519567 - MER5B DNA MER1_type 0 178 2 180 0 0 0 chr3 221007987 221008007 -6516571 + (T)n Simple_repeat Simple_repeat 1 20 0 230 204 37 0 chr3 221008141 221008195 -6516383 + C-rich Low_complexity Low_complexity 5 60 0 246 306 92 20 chr3 221009702 221009800 -6514778 - MIR SINE MIR -67 141 37 956 140 6 0 chr3 221010079 221010236 -6514342 - U1 snRNA snRNA 0 165 8 212 216 49 78 chr3 221010681 221010783 -6513795 - MIR SINE MIR 0 262 164 5631 106 12 19 chr3 221010783 221011725 -6512853 + L1MA5A LINE L1 5360 6294 -3 363 185 0 0 chr3 221011738 221011803 -6512775 - MIR SINE MIR -94 168 104 473 280 148 38 chr3 221012271 221012507 -6512071 + MIR SINE MIR 1 262 0 247 355 32 8 chr3 221012786 221012910 -6511668 - MER94 DNA DNA -2 132 6 22 80 0 0 chr3 221013140 221013190 -6511388 + AT_rich Low_complexity Low_complexity 1 50 0 444 323 8 0 chr3 221013317 221013441 -6511137 + L2 LINE L2 3189 3313 0 280 132 38 19 chr3 221014739 221014792 -6509786 - L2 LINE L2 -18 3254 3201 233 303 80 62 chr3 221014821 221014983 -6509595 - MIR3 SINE MIR -10 198 34 268 329 0 0 chr3 221016056 221016129 -6508449 + MIR3 SINE MIR 119 191 -17 449 233 19 0 chr3 221016191 221016294 -6508284 - MIR3 SINE MIR -6 202 98 185 275 77 88 chr3 221016694 221016785 -6507793 + L2 LINE L2 2972 3061 -211 1822 225 3 3 chr3 221016849 221017214 -6507364 + MLT1A1 LTR MaLR 1 365 0 266 296 0 0 chr3 221017220 221017291 -6507287 + L2 LINE L2 3202 3272 0 201 156 0 0 chr3 221018428 221018460 -6506118 + GA-rich Low_complexity Low_complexity 1 32 0 215 264 48 104 chr3 221018835 221018960 -6505618 - MIR SINE MIR -34 228 111 192 355 43 21 chr3 221019159 221019300 -6505278 - L2 LINE L2 -293 2979 2836 40716 32 22 2 chr3 221019739 221025768 -6498810 - L1PA2 LINE L1 -1 6154 3 1405 176 94 22 chr3 221025980 221026299 -6498279 + MER2 DNA MER2_type 1 342 -2 276 370 70 27 chr3 221026998 221027255 -6497323 + L2 LINE L2 2824 3091 -181 1595 168 0 4 chr3 221027396 221027664 -6496914 + Tigger7 DNA MER2_type 1 267 -2220 510 224 0 0 chr3 221027663 221027761 -6496817 + Tigger7 DNA MER2_type 2490 2587 0 * 326 258 48 32 chr3 221027802 221027926 -6496652 - MIR SINE MIR -134 128 3 303 71 0 0 chr3 221027984 221028026 -6496552 + (CA)n Simple_repeat Simple_repeat 2 43 0 207 0 0 0 chr3 221028824 221028847 -6495731 + (TTTTTG)n Simple_repeat Simple_repeat 2 24 0 289 245 0 0 chr3 221029906 221029959 -6494619 + L2 LINE L2 3248 3300 -13 198 103 0 0 chr3 221030191 221030220 -6494358 + (TAA)n Simple_repeat Simple_repeat 2 30 0 253 271 128 30 chr3 221030257 221030390 -6494188 - MIR SINE MIR -53 209 64 180 0 0 0 chr3 221030423 221030443 -6494135 + (CAA)n Simple_repeat Simple_repeat 2 21 0 208 214 119 12 chr3 221031159 221031243 -6493335 - MIR3 SINE MIR -17 191 99 488 282 98 12 chr3 221031838 221032001 -6492577 - MIR3 SINE MIR -31 177 1 992 255 16 16 chr3 221032608 221032930 -6491648 - MER46C DNA MER2_type -14 324 3 947 189 0 0 chr3 221033116 221033269 -6491309 + AluJb SINE Alu 129 281 -31 2145 66 3 3 chr3 221033269 221033555 -6491023 + L1PA8 LINE L1 5887 6172 0 1225 234 18 47 chr3 221033699 221033901 -6490677 + MLT1A2 LTR MaLR 2 189 -185 189 0 0 0 chr3 221033901 221033922 -6490656 + (TCTCCC)n Simple_repeat Simple_repeat 5 25 0 1225 234 18 47 chr3 221033922 221034103 -6490475 + MLT1A2 LTR MaLR 189 374 0 537 298 18 18 chr3 221034189 221034360 -6490218 + MIR3 SINE MIR 24 194 -14 299 315 22 87 chr3 221035232 221035416 -6489162 + MER5B DNA MER1_type 1 172 -6 207 0 0 0 chr3 221035850 221035873 -6488705 + (CA)n Simple_repeat Simple_repeat 2 24 0 227 323 15 0 chr3 221036146 221036211 -6488367 + L2 LINE L2 3248 3313 0 181 352 152 16 chr3 221036190 221036315 -6488263 + MIR3 SINE MIR 5 146 -62 * 5631 103 24 12 chr3 221036317 221037237 -6487341 + L1MA2 LINE L1 5374 6304 0 1537 143 4 4 chr3 221037439 221037670 -6486908 - AluJb SINE Alu -81 231 1 597 290 5 65 chr3 221037870 221038087 -6486491 - MIR SINE MIR -10 252 49 2987 211 60 26 chr3 221038383 221039222 -6485356 + L1P3 LINE L1 10 876 -5585 3922 26 7 0 chr3 221040362 221040825 -6483753 + L1PA4 LINE L1 5686 6151 -4 21 0 0 0 chr3 221041186 221041207 -6483371 + AT_rich Low_complexity Low_complexity 1 21 0 183 42 0 0 chr3 221041498 221041522 -6483056 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 294 297 109 55 chr3 221041604 221041769 -6482809 - MIR3 SINE MIR -5 203 30 2520 55 3 6 chr3 221042099 221042411 -6482167 - AluSq SINE Alu -2 311 1 27 73 0 0 chr3 221043664 221043719 -6480859 + AT_rich Low_complexity Low_complexity 1 55 0 846 154 0 28 chr3 221043761 221043904 -6480674 + FLAM_C SINE Alu 1 139 -4 404 188 82 0 chr3 221044096 221044181 -6480397 - Tigger5 DNA MER2_type 0 2323 2232 238 245 38 0 chr3 221044186 221044239 -6480339 - Tigger5 DNA MER2_type -2268 55 1 2582 93 6 3 chr3 221047895 221048249 -6476329 + THE1A LTR MaLR 1 355 0 10941 102 42 0 chr3 221048249 221049766 -6474812 + THE1A-int LTR MaLR 1 1580 0 2687 96 3 0 chr3 221049766 221050120 -6474458 + THE1A LTR MaLR 1 355 0 1100 121 61 12 chr3 221050132 221050297 -6474281 + AluSg/x SINE Alu 118 290 -20 681 114 0 0 chr3 221050300 221050405 -6474173 + (TA)n Simple_repeat Simple_repeat 1 105 0 967 213 88 124 chr3 221050407 221050874 -6473704 + L1ME LINE L1 4387 4817 -1329 192 97 0 0 chr3 221050874 221050905 -6473673 + (TG)n Simple_repeat Simple_repeat 1 31 0 967 213 88 124 chr3 221050905 221051201 -6473377 + L1ME LINE L1 4817 5122 -1024 926 78 0 0 chr3 221051231 221051346 -6473232 - AluY SINE Alu -14 297 183 280 29 0 0 chr3 221051346 221051381 -6473197 + THE1-int LTR MaLR 1379 1413 -167 1390 106 6 0 chr3 221051399 221051579 -6472999 - AluY SINE Alu -130 181 1 1079 235 54 76 chr3 221051594 221051857 -6472721 + L1ME LINE L1 5156 5423 -739 2028 107 0 73 chr3 221051857 221052174 -6472404 + AluSc SINE Alu 1 294 -15 1079 235 54 76 chr3 221052174 221052512 -6472066 + L1ME LINE L1 5423 5750 -412 301 287 19 19 chr3 221052514 221052622 -6471956 + L1M4 LINE L1 4993 5100 -1046 236 114 0 0 chr3 221052625 221052669 -6471909 - L1PA8 LINE L1 -1 6171 6128 255 102 41 0 chr3 221052761 221052810 -6471768 + L1M4 LINE L1 5188 5238 -908 791 274 61 7 chr3 221052818 221053129 -6471449 + L1ME3 LINE L1 5625 5953 -217 306 212 45 73 chr3 221053218 221053371 -6471207 + L1ME3 LINE L1 5988 6134 -28 180 268 211 14 chr3 221054599 221054670 -6469908 + L2 LINE L2 3168 3252 -20 1904 141 10 3 chr3 221054909 221055200 -6469378 - AluJb SINE Alu -19 293 1 247 263 9 26 chr3 221055623 221055737 -6468841 + L1P LINE L1 4906 5017 -1129 22 0 0 0 chr3 221055839 221055861 -6468717 + AT_rich Low_complexity Low_complexity 1 22 0 730 238 44 112 chr3 221057905 221058083 -6466495 + L1MC4a LINE L1 6443 6632 -1176 333 0 0 0 chr3 221058083 221058120 -6466458 + (TG)n Simple_repeat Simple_repeat 1 37 0 730 238 44 112 chr3 221058120 221058352 -6466226 + L1MC4a LINE L1 6632 6825 -983 7637 54 6 4 chr3 221058453 221059653 -6464925 + L1PA8 LINE L1 4969 6166 -6 313 300 133 0 chr3 221059894 221060014 -6464564 - MIR3 SINE MIR -1 207 72 190 321 48 12 chr3 221060100 221060184 -6464394 + MIR3 SINE MIR 104 190 -18 208 308 0 0 chr3 221060796 221060848 -6463730 + (TG)n Simple_repeat Simple_repeat 1 52 0 405 264 139 69 chr3 221061000 221061288 -6463290 + LTR16C LTR ERVL 158 465 -26 2190 103 33 0 chr3 221061964 221062264 -6462314 - AluSg SINE Alu 0 310 1 25 0 0 0 chr3 221063225 221063250 -6461328 + AT_rich Low_complexity Low_complexity 1 25 0 250 259 69 26 chr3 221066452 221066568 -6458010 + L2 LINE L2 2383 2503 -811 2953 194 69 41 chr3 221066705 221066791 -6457787 + Charlie1a DNA MER1_type 1 83 -2678 910 141 0 8 chr3 221066791 221066919 -6457659 - FLAM_C SINE Alu -6 127 1 2953 194 69 41 chr3 221066919 221067568 -6457010 + Charlie1a DNA MER1_type 83 757 -698 758 184 35 7 chr3 221067978 221068119 -6456459 + MLT1A1 LTR MaLR 1 145 -220 582 217 23 1 chr3 221068219 221068366 -6456212 + L1MC4 LINE L1 6857 7075 -803 1574 254 104 37 chr3 221068369 221068955 -6455623 + L1MC4 LINE L1 7247 7877 -165 2073 145 23 69 chr3 221068955 221069348 -6455230 + THE1C LTR MaLR 1 375 0 1574 254 104 37 chr3 221069348 221069376 -6455202 + L1MC4 LINE L1 7877 7902 -140 229 319 28 0 chr3 221069429 221069573 -6455005 + A-rich Low_complexity Low_complexity 2 149 0 4241 211 23 17 chr3 221069826 221070757 -6453821 + Cheshire DNA MER1_type 895 1830 -590 1308 178 5 9 chr3 221071343 221071562 -6453016 + MER20 DNA MER1_type 1 218 -1 255 79 0 0 chr3 221071745 221071783 -6452795 + (T)n Simple_repeat Simple_repeat 1 38 0 1047 179 0 42 chr3 221072418 221072681 -6451897 + pTR5 LTR ERV1 743 994 -1444 22 80 0 0 chr3 221072850 221072900 -6451678 + AT_rich Low_complexity Low_complexity 1 50 0 1751 96 76 4 chr3 221073294 221073543 -6451035 - L1PA7 LINE L1 -4 6150 5884 209 0 97 0 chr3 221074149 221074180 -6450398 + T-rich Low_complexity Low_complexity 2 35 0 2443 72 0 3 chr3 221075464 221075768 -6448810 + AluSq SINE Alu 1 303 -10 22 0 0 0 chr3 221075891 221075913 -6448665 + AT_rich Low_complexity Low_complexity 1 22 0 352 295 161 40 chr3 221076612 221076836 -6447742 - MIR SINE MIR -10 252 2 274 321 67 37 chr3 221077896 221078030 -6446548 + MIR3 SINE MIR 9 146 -62 1673 59 5 5 chr3 221079452 221079673 -6444905 - pTR5 LTR ERV1 -2046 392 172 338 245 10 0 chr3 221079676 221079774 -6444804 - LTR30 LTR ERV1 -80 642 544 1194 153 127 41 chr3 221079774 221080042 -6444536 - pTR5 LTR ERV1 -413 2025 1735 2443 67 0 10 chr3 221080394 221080694 -6443884 + AluY SINE Alu 1 297 -14 350 282 115 32 chr3 221081019 221081175 -6443403 - MIR3 SINE MIR -24 184 16 220 343 0 0 chr3 221081192 221081262 -6443316 + MER5A DNA MER1_type 46 115 -74 22 0 0 0 chr3 221082024 221082046 -6442532 + AT_rich Low_complexity Low_complexity 1 22 0 475 336 26 26 chr3 221082573 221082805 -6441773 + MIR SINE MIR 20 251 -11 262 148 0 33 chr3 221083211 221083272 -6441306 + (GGAA)n Simple_repeat Simple_repeat 4 62 0 190 271 34 0 chr3 221085076 221085135 -6439443 - MIR SINE MIR -62 146 86 278 340 115 0 chr3 221085740 221085896 -6438682 + MIR3 SINE MIR 30 203 -5 1385 173 4 17 chr3 221086590 221086827 -6437751 - AluJo SINE Alu -24 288 55 226 250 125 0 chr3 221087069 221087141 -6437437 - MIR SINE MIR -151 111 31 403 347 20 20 chr3 221088531 221088681 -6435897 - MIR3 SINE MIR -25 183 34 1411 171 20 4 chr3 221089245 221089491 -6435087 + MLT1A1 LTR MaLR 116 365 0 1043 231 110 33 chr3 221089769 221090106 -6434472 + LTR16A LTR ERVL 88 450 0 324 0 0 0 chr3 221092118 221092154 -6432424 + (CA)n Simple_repeat Simple_repeat 2 37 0 237 350 34 34 chr3 221092630 221092747 -6431831 - MIR3 SINE MIR -25 183 67 369 322 8 17 chr3 221093305 221093423 -6431155 + MIR SINE MIR 24 140 -122 417 373 8 0 chr3 221093731 221093857 -6430721 - MER91A DNA MER1_type -50 146 20 1175 235 0 5 chr3 221093974 221094187 -6430391 + MER8 DNA MER2_type 28 239 0 343 361 53 8 chr3 221095405 221095538 -6429040 - L2 LINE L2 0 3272 3134 837 291 64 62 chr3 221095544 221095950 -6428628 - MLT1I LTR MaLR -2 407 1 360 356 132 14 chr3 221096020 221096301 -6428277 + L3 LINE CR1 1155 1468 -109 348 300 99 70 chr3 221096687 221096797 -6427781 - MIR SINE MIR -7 255 150 2233 100 0 3 chr3 221096797 221097086 -6427492 - AluSc SINE Alu -21 288 1 348 300 99 70 chr3 221097086 221097204 -6427374 - MIR SINE MIR -112 150 17 1841 140 21 7 chr3 221149069 221149381 -6375197 + AluSx SINE Alu 1 316 0 612 144 10 0 chr3 221149448 221149545 -6375033 - FRAM SINE Alu -19 157 60 2182 167 8 23 chr3 221150543 221150939 -6373639 + MLT1B LTR MaLR 1 390 0 216 246 33 0 chr3 221151033 221151094 -6373484 - MIR SINE MIR -105 103 41 181 318 119 33 chr3 221151827 221151978 -6372600 + MER5A DNA MER1_type 24 187 -2 230 298 46 38 chr3 221151839 221151970 -6372608 - MER5B DNA MER1_type -24 154 23 859 254 14 23 chr3 221152099 221152316 -6372262 - MLT1F1 LTR MaLR -3 564 350 229 181 83 28 chr3 221152435 221152507 -6372071 + MIR3 SINE MIR 88 163 -45 2158 210 107 50 chr3 221152526 221152568 -6372010 - L1ME1 LINE L1 -6 6160 6122 648 0 0 0 chr3 221152568 221152640 -6371938 + (TA)n Simple_repeat Simple_repeat 2 73 0 2178 92 0 3 chr3 221152643 221152925 -6371653 - AluY SINE Alu -30 281 1 2158 210 107 50 chr3 221152925 221153479 -6371099 - L1ME1 LINE L1 -45 6121 5526 335 71 0 0 chr3 221153618 221153660 -6370918 - Alu SINE Alu -18 284 243 1630 186 0 4 chr3 221153719 221153993 -6370585 - AluJo SINE Alu -28 284 12 595 144 162 0 chr3 221154016 221154127 -6370451 - FLAM_C SINE Alu -3 130 2 330 45 0 0 chr3 221154208 221154252 -6370326 + (TG)n Simple_repeat Simple_repeat 2 45 0 284 269 206 7 chr3 221154691 221154832 -6369746 + MER5A DNA MER1_type 9 177 -12 589 186 47 23 chr3 221155102 221155231 -6369347 + MLT1C LTR MaLR 336 467 0 308 336 35 0 chr3 221155385 221155501 -6369077 - L2 LINE L2 0 3272 3153 1888 178 40 8 chr3 221155501 221155855 -6368723 + MLT1A1 LTR MaLR 1 365 0 208 287 59 10 chr3 221155979 221156080 -6368498 - L2 LINE L2 -212 3060 2955 613 226 0 0 chr3 221156260 221156375 -6368203 - FLAM_C SINE Alu -22 121 7 2128 127 7 0 chr3 221156375 221156674 -6367904 - AluSq SINE Alu -9 304 4 1736 168 3 10 chr3 221157654 221157946 -6366632 + AluJb SINE Alu 21 310 -2 1808 196 88 23 chr3 221158258 221158692 -6365886 + MLT1F LTR MaLR 81 542 0 180 250 0 21 chr3 221158747 221158795 -6365783 + MIR SINE MIR 99 145 -63 368 275 60 30 chr3 221158804 221158971 -6365607 - MER104 DNA Tc2 -6 174 3 367 322 29 6 chr3 221159267 221159441 -6365137 - MER5B DNA MER1_type 0 178 1 2198 99 0 7 chr3 221159721 221160013 -6364565 + AluSg SINE Alu 2 291 -19 274 276 52 83 chr3 221161134 221161326 -6363252 + L2 LINE L2 3087 3272 0 1044 154 0 0 chr3 221161381 221161563 -6363015 + AluSg/x SINE Alu 135 316 0 249 139 0 0 chr3 221161632 221161675 -6362903 + (A)n Simple_repeat Simple_repeat 1 43 0 2322 71 4 0 chr3 221162017 221162297 -6362281 - AluSc SINE Alu -7 302 22 239 200 73 0 chr3 221162887 221162942 -6361636 - MIR3 SINE MIR -6 202 144 262 234 62 47 chr3 221163168 221163296 -6361282 - HAL1b LINE L1 -28 1320 1191 189 154 0 0 chr3 221163298 221163337 -6361241 + (TA)n Simple_repeat Simple_repeat 2 40 0 348 252 92 30 chr3 221163809 221163940 -6360638 + LTR16A1 LTR ERVL 319 457 0 2161 104 0 14 chr3 221163944 221164253 -6360325 - AluSg SINE Alu 0 305 1 2035 152 0 0 chr3 221165324 221165634 -6358944 - AluSx SINE Alu -2 310 1 1833 134 14 0 chr3 221166676 221166953 -6357625 - AluSx SINE Alu -2 310 30 385 294 31 19 chr3 221167098 221167258 -6357320 + L1ME3 LINE L1 6000 6161 -1 946 234 141 64 chr3 221167594 221168078 -6356500 + LTR33 LTR ERVL 1 521 0 22 35 0 0 chr3 221168487 221168516 -6356062 + AT_rich Low_complexity Low_complexity 1 29 0 315 311 19 0 chr3 221168933 221169036 -6355542 + MIR SINE MIR 43 147 -61 425 319 131 56 chr3 221169137 221169884 -6354694 + L2 LINE L2 2311 3095 -177 189 107 0 0 chr3 221170955 221170983 -6353595 + (A)n Simple_repeat Simple_repeat 1 28 0 2259 106 0 3 chr3 221171148 221171440 -6353138 + AluSp SINE Alu 1 291 -22 351 0 0 0 chr3 221172269 221172308 -6352270 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 434 133 27 0 chr3 221172927 221173002 -6351576 - AluJ/FRAM SINE Alu -19 293 217 215 270 206 0 chr3 221173007 221173070 -6351508 + L2 LINE L2 3238 3313 0 321 125 0 0 chr3 221173174 221173222 -6351356 - MIR3 SINE MIR -28 180 133 21 0 0 0 chr3 221173351 221173372 -6351206 + AT_rich Low_complexity Low_complexity 1 21 0 2480 76 0 16 chr3 221174657 221174971 -6349607 - AluY SINE Alu -1 310 2 276 268 177 8 chr3 221175298 221175452 -6349126 - MIR SINE MIR -70 192 21 302 289 132 0 chr3 221176318 221176432 -6348146 + MIR3 SINE MIR 77 205 -3 2237 82 34 7 chr3 221177100 221177392 -6347186 + AluSq SINE Alu 1 300 -13 194 250 31 16 chr3 221177493 221177557 -6347021 + MIR SINE MIR 85 149 -113 203 341 11 34 chr3 221177831 221177919 -6346659 - MIR SINE MIR -90 172 87 326 197 53 0 chr3 221178079 221178155 -6346423 - MIR SINE MIR -120 142 63 222 344 21 0 chr3 221178192 221178288 -6346290 - MIR SINE MIR -7 255 158 376 319 12 19 chr3 221178514 221178674 -6345904 + Charlie8 DNA MER1_type 1 159 -2258 343 120 0 0 chr3 221180898 221180948 -6343630 + AluS SINE Alu 227 276 -26 415 211 199 6 chr3 221181875 221182031 -6342547 + MER5A DNA MER1_type 4 189 0 240 180 40 0 chr3 221182188 221182238 -6342340 - L1MC5 LINE L1 -52 7909 7858 883 135 6 25 chr3 221182325 221182488 -6342090 - L1MB2 LINE L1 0 6171 6012 797 221 52 12 chr3 221182519 221182691 -6341887 + AluJo SINE Alu 114 292 -20 243 167 0 0 chr3 221182692 221182734 -6341844 - L1MC5 LINE L1 -311 7650 7609 2349 89 0 0 chr3 221183586 221183879 -6340699 + AluSg1 SINE Alu 1 293 -16 2540 47 0 3 chr3 221185177 221185477 -6339101 + AluY SINE Alu 1 299 -12 991 159 55 5 chr3 221186475 221186676 -6337902 - LTR37B LTR ERV1 0 468 258 1094 96 0 0 chr3 221186676 221186811 -6337767 + AluSq/x SINE Alu 1 135 -177 2291 110 7 0 chr3 221186811 221187110 -6337468 + AluSq SINE Alu 1 301 -12 950 211 15 10 chr3 221187194 221187393 -6337185 - LTR37B LTR ERV1 -260 208 9 782 87 4 2 chr3 221187470 221187711 -6336867 + AluSp SINE Alu 2 293 -20 245 287 59 40 chr3 221188470 221188571 -6336007 - MIR3 SINE MIR -92 116 14 654 247 202 18 chr3 221188673 221188896 -6335682 - Charlie8 DNA MER1_type -2142 275 12 1672 118 126 0 chr3 221188929 221189192 -6335386 + AluJb SINE Alu 1 296 -16 811 160 8 0 chr3 221189444 221189563 -6335015 - FLAM_A SINE Alu -12 130 11 189 322 124 38 chr3 221190047 221190325 -6334253 - L2 LINE L2 -225 3047 2748 2335 98 13 0 chr3 221190466 221190771 -6333807 + AluSx SINE Alu 1 309 -3 376 296 259 17 chr3 221190802 221191222 -6333356 - L2 LINE L2 -614 2700 2383 2645 52 0 3 chr3 221191222 221191528 -6333050 + AluY SINE Alu 1 305 -6 376 296 259 17 chr3 221191528 221191698 -6332880 - L2 LINE L2 -931 2383 1967 2378 79 0 0 chr3 221191880 221192172 -6332406 + AluSg SINE Alu 1 292 -18 1107 61 0 0 chr3 221192507 221192639 -6331939 + AluY SINE Alu 1 132 -179 586 255 109 5 chr3 221193561 221193745 -6330833 + MIR SINE MIR 35 237 -25 384 219 44 44 chr3 221193774 221193911 -6330667 + MIR3 SINE MIR 72 208 0 215 315 0 94 chr3 221194520 221194647 -6329931 + MIR3 SINE MIR 93 207 -1 843 216 44 31 chr3 221194730 221194848 -6329730 + MIR SINE MIR 33 157 -105 2140 182 28 24 chr3 221194848 221195272 -6329306 + MSTB LTR MaLR 1 426 0 843 216 44 31 chr3 221195272 221195380 -6329198 + MIR SINE MIR 157 262 0 315 276 23 0 chr3 221195449 221195536 -6329042 + MIR SINE MIR 41 129 -79 948 197 39 0 chr3 221195747 221195925 -6328653 + MER5A DNA MER1_type 3 187 -2 1074 129 9 137 chr3 221196515 221196576 -6328002 + AluJb SINE Alu 85 152 -160 2295 100 3 0 chr3 221196576 221196885 -6327693 + AluSg SINE Alu 1 310 0 1074 129 9 137 chr3 221196885 221197056 -6327522 + AluJb SINE Alu 152 287 -25 447 231 76 47 chr3 221197184 221197354 -6327224 + MIR SINE MIR 40 212 -50 409 274 126 59 chr3 221197758 221198130 -6326448 + L2 LINE L2 2912 3308 -5 205 270 36 13 chr3 221198814 221198901 -6325677 + MIR SINE MIR 74 161 -62 566 188 88 56 chr3 221199553 221199686 -6324892 - MLT1F1 LTR MaLR -402 165 25 2503 74 0 0 chr3 221199686 221199985 -6324593 - AluY SINE Alu -12 299 1 566 188 88 56 chr3 221199985 221200011 -6324567 - MLT1F1 LTR MaLR -542 25 1 209 318 12 0 chr3 221200836 221200921 -6323657 + (TATATG)n Simple_repeat Simple_repeat 5 90 0 306 73 0 0 chr3 221201657 221201698 -6322880 + (T)n Simple_repeat Simple_repeat 1 41 0 188 353 60 23 chr3 221202223 221202356 -6322222 + MIR SINE MIR 9 146 -116 1702 203 108 45 chr3 221202522 221203030 -6321548 + MLT1F LTR MaLR 1 540 -2 271 281 49 0 chr3 221204311 221204393 -6320185 - MIR3 SINE MIR -42 166 81 220 279 87 29 chr3 221204940 221205044 -6319534 + MIR SINE MIR 40 149 -113 1703 143 47 21 chr3 221207054 221207333 -6317245 + AluJo SINE Alu 1 286 -26 26 30 0 0 chr3 221207334 221207367 -6317211 + AT_rich Low_complexity Low_complexity 1 33 0 260 275 62 0 chr3 221207571 221207651 -6316927 - MIR SINE MIR -6 256 172 2241 80 0 4 chr3 221210598 221210874 -6313704 - AluSg SINE Alu -35 275 1 280 288 42 93 chr3 221210909 221211145 -6313433 + L2 LINE L2 3089 3312 -1 2239 103 7 3 chr3 221211176 221211476 -6313102 - AluSg SINE Alu -9 301 1 343 259 233 16 chr3 221212195 221212388 -6312190 + MIR SINE MIR 16 250 -12 1817 157 48 20 chr3 221212394 221212736 -6311842 + L1MB7 LINE L1 5767 6121 -63 2166 118 0 31 chr3 221212736 221213058 -6311520 - AluSx SINE Alu 0 312 1 1817 157 48 20 chr3 221213058 221213071 -6311507 + L1MB7 LINE L1 6121 6132 -52 300 27 0 0 chr3 221214277 221214314 -6310264 + (TC)n Simple_repeat Simple_repeat 2 38 0 8445 148 55 3 chr3 221214940 221216310 -6308268 + Tigger1 DNA MER2_type 1 1441 -977 1108 124 138 29 chr3 221216322 221216360 -6308218 + Tigger1 DNA MER2_type 2185 2217 -201 2088 125 0 7 chr3 221216360 221216656 -6307922 - AluSg SINE Alu -16 294 1 1108 124 138 29 chr3 221216656 221216827 -6307751 + Tigger1 DNA MER2_type 2217 2417 -1 247 309 135 24 chr3 221216835 221216961 -6307617 - MIR SINE MIR -111 151 12 1937 129 57 0 chr3 221217053 221217333 -6307245 + AluSx SINE Alu 3 298 -14 342 321 55 24 chr3 221217521 221217686 -6306892 + MIR SINE MIR 23 192 -70 1917 162 10 0 chr3 221217804 221218113 -6306465 - AluJb SINE Alu 0 312 1 2377 109 0 0 chr3 221219028 221219341 -6305237 + AluSp SINE Alu 1 313 0 352 286 117 48 chr3 221220626 221220874 -6303704 + L2 LINE L2 3008 3272 0 258 116 0 0 chr3 221221548 221221591 -6302987 + (TTTA)n Simple_repeat Simple_repeat 2 44 0 2461 66 10 3 chr3 221222710 221223014 -6301564 + AluSp SINE Alu 1 306 -7 203 361 148 7 chr3 221223086 221223377 -6301201 + L3 LINE CR1 736 1067 -510 233 303 131 8 chr3 221223581 221223703 -6300875 + L3 LINE CR1 1344 1480 -97 418 261 152 16 chr3 221223748 221223932 -6300646 + MLT1K LTR MaLR 2 210 -257 742 179 8 0 chr3 221223943 221224066 -6300512 - MLT1A1 LTR MaLR -7 358 235 21 0 0 0 chr3 221224438 221224459 -6300119 + AT_rich Low_complexity Low_complexity 1 21 0 189 300 43 0 chr3 221225282 221225352 -6299226 + MIR3 SINE MIR 92 164 -44 799 263 115 33 chr3 221225354 221225846 -6298732 + MLT1H1 LTR MaLR 4 590 0 453 241 153 12 chr3 221226059 221226229 -6298349 + MLT1K LTR MaLR 361 554 -34 1818 122 0 0 chr3 221226733 221226980 -6297598 + AluSx SINE Alu 49 295 -17 623 143 0 9 chr3 221226980 221227092 -6297486 + (GGAA)n Simple_repeat Simple_repeat 1 111 0 1884 100 39 68 chr3 221228120 221228431 -6296147 + AluSx SINE Alu 1 302 -10 206 62 31 0 chr3 221228431 221228463 -6296115 + (GGAA)n Simple_repeat Simple_repeat 1 33 0 373 305 31 8 chr3 221229085 221229213 -6295365 - L2 LINE L2 -1 3312 3182 2555 40 0 0 chr3 221230006 221230303 -6294275 + AluY SINE Alu 1 297 -14 2373 64 0 61 chr3 221230930 221231256 -6293322 - AluY SINE Alu -5 306 1 1826 224 47 30 chr3 221231376 221231512 -6293066 - Charlie4a DNA MER1_type -1462 499 367 2614 55 0 3 chr3 221231512 221231821 -6292757 + AluY SINE Alu 1 308 -3 1826 224 47 30 chr3 221231821 221232175 -6292403 - Charlie4a DNA MER1_type -1594 367 1 2350 88 3 22 chr3 221232187 221232505 -6292073 + AluSx SINE Alu 1 312 0 1720 129 21 59 chr3 221232726 221233013 -6291565 + AluJb SINE Alu 5 280 -32 304 289 20 45 chr3 221233506 221233646 -6290932 - MIR SINE MIR -69 139 30 237 271 168 54 chr3 221233662 221233865 -6290713 + MIR SINE MIR 17 242 -20 236 329 0 12 chr3 221234783 221234868 -6289710 + L2 LINE L2 3188 3271 -1 2462 82 0 13 chr3 221234925 221235241 -6289337 + AluSq SINE Alu 1 312 -1 212 221 157 64 chr3 221235322 221235460 -6289118 + MIR SINE MIR 16 166 -61 1703 167 0 7 chr3 221235679 221235955 -6288623 + AluJb SINE Alu 28 301 -11 1757 175 3 29 chr3 221236080 221236388 -6288190 + AluJo SINE Alu 1 300 -12 356 321 50 25 chr3 221236661 221236820 -6287758 + MIR SINE MIR 20 182 -80 207 0 0 0 chr3 221238637 221238660 -6285918 + (TA)n Simple_repeat Simple_repeat 2 24 0 186 43 0 0 chr3 221240124 221240147 -6284431 + (CA)n Simple_repeat Simple_repeat 1 23 0 383 234 54 0 chr3 221241804 221241915 -6282663 + MIR SINE MIR 127 243 -19 713 220 44 13 chr3 221242233 221242392 -6282186 - AluJb SINE Alu -17 295 132 2067 113 3 3 chr3 221242680 221242990 -6281588 + AluSx SINE Alu 1 310 0 181 343 56 0 chr3 221243671 221243779 -6280799 + L2 LINE L2 3155 3268 -4 2230 125 0 0 chr3 221243797 221244101 -6280477 + AluSg SINE Alu 1 304 -6 205 204 23 0 chr3 221244300 221244344 -6280234 + GA-rich Low_complexity Low_complexity 2 46 0 192 291 26 51 chr3 221244906 221245023 -6279555 - MIR3 SINE MIR -2 206 93 31 0 0 0 chr3 221245138 221245169 -6279409 + AT_rich Low_complexity Low_complexity 1 31 0 2306 100 0 19 chr3 221245395 221245704 -6278874 - AluSg SINE Alu -7 303 1 202 186 20 157 chr3 221246222 221246324 -6278254 - MIR SINE MIR -68 194 107 292 279 57 144 chr3 221246345 221246643 -6277935 + L2 LINE L2 3001 3272 0 24 32 0 0 chr3 221247317 221247348 -6277230 + AT_rich Low_complexity Low_complexity 1 31 0 683 306 63 15 chr3 221247348 221247619 -6276959 + L3 LINE CR1 1293 1576 -1 2345 70 33 0 chr3 221247821 221248120 -6276458 - AluY SINE Alu -2 309 1 207 0 0 0 chr3 221248394 221248417 -6276161 + (A)n Simple_repeat Simple_repeat 1 23 0 2148 106 6 6 chr3 221248417 221248728 -6275850 + AluY SINE Alu 1 311 0 225 65 0 0 chr3 221248904 221248935 -6275643 + (GA)n Simple_repeat Simple_repeat 1 31 0 221 174 0 22 chr3 221249112 221249158 -6275420 + GA-rich Low_complexity Low_complexity 4 48 0 253 229 0 83 chr3 221249272 221249368 -6275210 - AluSg/x SINE Alu -4 298 211 2250 109 7 0 chr3 221249514 221249807 -6274771 - AluSx SINE Alu -17 295 1 209 317 162 14 chr3 221249882 221250024 -6274554 + MIR3 SINE MIR 31 193 -15 186 273 78 26 chr3 221250919 221250996 -6273582 - MIR SINE MIR -70 138 58 405 300 27 0 chr3 221251218 221251328 -6273250 - L2 LINE L2 -1 3312 3200 1687 162 63 33 chr3 221251329 221251663 -6272915 - MLT2C1 LTR ERVL -52 345 2 2563 63 0 6 chr3 221253801 221254118 -6270460 + AluYb8 SINE Alu 1 315 -3 1333 91 0 6 chr3 221254120 221254295 -6270283 + AluY SINE Alu 126 299 -12 1987 131 14 0 chr3 221254307 221254598 -6269980 + AluSx SINE Alu 1 295 -17 27 29 0 0 chr3 221255177 221255211 -6269367 + AT_rich Low_complexity Low_complexity 1 34 0 269 109 22 0 chr3 221255218 221255264 -6269314 + (TA)n Simple_repeat Simple_repeat 2 48 0 252 106 0 0 chr3 221255264 221255311 -6269267 + LTR66 LTR ERVL 394 440 -170 576 148 0 102 chr3 221255311 221255439 -6269139 - FLAM_A SINE Alu -10 132 18 1655 185 0 13 chr3 221255704 221255881 -6268697 - AluJb SINE Alu -3 309 136 1864 156 3 20 chr3 221255881 221256183 -6268395 - AluSx SINE Alu -15 297 1 1655 185 0 13 chr3 221256183 221256318 -6268260 - AluJb SINE Alu -176 136 1 387 274 165 28 chr3 221256555 221256767 -6267811 - MLT1K LTR MaLR -198 390 150 408 20 0 0 chr3 221256887 221256936 -6267642 + (CA)n Simple_repeat Simple_repeat 2 50 0 448 190 3 113 chr3 221257172 221257333 -6267245 + L1MA2 LINE L1 5993 6142 -162 420 20 0 0 chr3 221257334 221257383 -6267195 + (TG)n Simple_repeat Simple_repeat 2 50 0 1095 186 10 5 chr3 221257428 221257621 -6266957 - AluJo SINE Alu -92 220 27 944 147 102 0 chr3 221257621 221257798 -6266780 + L1MA3 LINE L1 6111 6305 0 2029 145 137 8 chr3 221257828 221258194 -6266384 + MSTA LTR MaLR 1 413 -15 364 259 98 21 chr3 221258459 221258602 -6265976 + MLT1J2 LTR MaLR 243 396 -54 2293 102 0 7 chr3 221258618 221258921 -6265657 - AluSx SINE Alu -9 303 3 2199 115 10 0 chr3 221259171 221259475 -6265103 - AluSx SINE Alu -5 307 1 195 292 62 31 chr3 221260100 221260151 -6264427 - MIR3 SINE MIR -1 207 159 2040 68 0 8 chr3 221260151 221260400 -6264178 - AluSc SINE Alu -21 288 42 195 292 62 31 chr3 221260400 221260444 -6264134 - MIR3 SINE MIR -49 159 109 4510 85 186 35 chr3 221261276 221261993 -6262585 - LTR12 LTR ERV1 0 826 2 2368 66 3 3 chr3 221262363 221262646 -6261932 + AluY SINE Alu 1 307 0 486 43 0 14 chr3 221262646 221262715 -6261863 + (TAA)n Simple_repeat Simple_repeat 2 180 0 263 292 150 0 chr3 221263262 221263375 -6261203 - MIR SINE MIR -71 191 62 2552 71 0 0 chr3 221263484 221263793 -6260785 + AluY SINE Alu 3 311 0 1968 151 3 0 chr3 221264010 221264301 -6260277 - AluJb SINE Alu -18 294 3 222 192 0 0 chr3 221264555 221264607 -6259971 + CT-rich Low_complexity Low_complexity 4 55 0 1774 204 55 33 chr3 221265320 221265772 -6258806 + MLT1C LTR MaLR 6 467 0 336 288 36 0 chr3 221265998 221266109 -6258469 - MIR SINE MIR -71 137 23 2207 111 0 19 chr3 221266668 221266975 -6257603 - AluSx SINE Alu -11 301 1 291 231 43 17 chr3 221267115 221267217 -6257361 - MIR3 SINE MIR -40 168 88 261 293 69 103 chr3 221267245 221267535 -6257043 + L1MC/D LINE L1 5374 5653 -2155 244 349 12 0 chr3 221267805 221267891 -6256687 + MIR SINE MIR 36 122 -140 299 24 0 24 chr3 221268093 221268134 -6256444 + (TG)n Simple_repeat Simple_repeat 2 41 0 310 307 14 21 chr3 221268316 221268456 -6256122 + LTR16C LTR ERVL 330 468 -23 277 253 0 40 chr3 221268479 221268578 -6256000 + MIR SINE MIR 168 262 0 189 381 45 19 chr3 221268873 221269028 -6255550 - L3b LINE CR1 -160 1423 1265 185 0 40 0 chr3 221269317 221269342 -6255236 + (TG)n Simple_repeat Simple_repeat 1 26 0 503 345 106 26 chr3 221269452 221270006 -6254572 + L2 LINE L2 2715 3309 -4 1044 215 88 23 chr3 221270249 221270556 -6254022 + L1ME1 LINE L1 4709 5035 -1111 1740 131 44 20 chr3 221270588 221270885 -6253693 - AluJb SINE Alu -8 304 1 1317 149 71 48 chr3 221270973 221271241 -6253337 - MLT1D LTR MaLR -44 461 188 2631 234 48 63 chr3 221271244 221271648 -6252930 + L1ME1 LINE L1 5086 5494 -672 2347 115 3 0 chr3 221271648 221271960 -6252618 + AluSp SINE Alu 1 313 0 2631 234 48 63 chr3 221271960 221272653 -6251925 + L1ME1 LINE L1 5494 6165 -1 307 297 24 86 chr3 221272684 221272795 -6251783 + MIR SINE MIR 54 149 -113 2169 86 4 4 chr3 221272795 221273124 -6251454 + AluSc SINE Alu 1 329 0 307 297 24 86 chr3 221273124 221273220 -6251358 + MIR SINE MIR 149 249 -13 312 331 119 0 chr3 221273336 221273496 -6251082 + MIR SINE MIR 84 262 0 351 65 0 0 chr3 221274009 221274055 -6250523 + (CAT)n Simple_repeat Simple_repeat 2 47 0 308 359 35 7 chr3 221274398 221274543 -6250035 - MIR3 SINE MIR -22 186 38 365 328 66 23 chr3 221274856 221275030 -6249548 - L1ME3A LINE L1 -289 5881 5691 694 213 0 0 chr3 221275030 221275157 -6249421 - FLAM_A SINE Alu -6 127 1 365 328 66 23 chr3 221275157 221275241 -6249337 - L1ME3A LINE L1 -479 5691 5612 2412 53 0 11 chr3 221275457 221275769 -6248809 + AluY SINE Alu 1 309 0 316 280 49 42 chr3 221275859 221276002 -6248576 - L1ME3A LINE L1 -1089 5057 4914 5543 134 10 8 chr3 221276060 221277319 -6247259 - L1PA16 LINE L1 0 6166 4903 2122 149 0 0 chr3 221277423 221277732 -6246846 - AluJb SINE Alu -1 311 3 354 195 0 0 chr3 221278662 221278749 -6245829 + (TG)n Simple_repeat Simple_repeat 2 88 0 1762 180 0 13 chr3 221278985 221279301 -6245277 - AluJb SINE Alu 0 312 1 750 269 42 0 chr3 221280123 221280335 -6244243 + MIR SINE MIR 23 243 -19 602 236 93 37 chr3 221280678 221280924 -6243654 - MIR SINE MIR -2 260 1 2244 135 28 8 chr3 221282387 221282742 -6241836 - THE1B LTR MaLR 0 364 3 7979 16 0 2 chr3 221282911 221284068 -6240510 - L1PA3 LINE L1 0 6155 5001 14157 36 1 8 chr3 221284068 221285826 -6238752 - L1PA3 LINE L1 -1826 4320 2576 545 236 16 16 chr3 221286383 221286506 -6238072 + MER3 DNA MER1_type 7 129 -80 2197 83 21 10 chr3 221286506 221286796 -6237782 - AluSc SINE Alu -16 293 1 414 258 97 46 chr3 221287232 221287449 -6237129 + MIR SINE MIR 2 229 -33 309 338 15 8 chr3 221288202 221288335 -6236243 + (TGGA)n Simple_repeat Simple_repeat 2 135 0 311 250 9 0 chr3 221288396 221288512 -6236066 + (TGGA)n Simple_repeat Simple_repeat 2 118 0 317 340 10 0 chr3 221288525 221288625 -6235953 + (TGGG)n Simple_repeat Simple_repeat 2 102 0 2473 68 3 0 chr3 221288897 221289193 -6235385 + AluY SINE Alu 1 297 -14 268 280 10 0 chr3 221289490 221289590 -6234988 + L1MC4 LINE L1 7941 8041 -1 192 261 57 11 chr3 221292595 221292683 -6231895 + L2 LINE L2 2146 2237 -1077 804 186 10 41 chr3 221293023 221293217 -6231361 - AluSq SINE Alu -125 188 1 431 35 0 0 chr3 221293430 221293487 -6231091 - AluY SINE Alu -7 304 248 673 230 94 52 chr3 221293558 221293771 -6230807 - MIR SINE MIR -25 237 16 393 188 178 10 chr3 221294425 221294526 -6230052 + L2 LINE L2 3195 3312 -1 653 162 84 14 chr3 221294615 221294757 -6229821 - MIR SINE MIR -21 241 90 2432 50 3 7 chr3 221295308 221295607 -6228971 - AluY SINE Alu -13 298 1 833 168 0 0 chr3 221295636 221295767 -6228811 - FLAM_C SINE Alu -2 131 1 949 130 54 30 chr3 221295792 221295836 -6228742 - L1M4 LINE L1 -739 5435 5394 1875 174 0 3 chr3 221295836 221296129 -6228449 - AluJb SINE Alu -20 292 1 949 130 54 30 chr3 221296129 221296339 -6228239 - L1M4 LINE L1 -780 5394 5179 181 88 59 29 chr3 221296936 221296970 -6227608 - MER5A DNA MER1_type -24 165 131 2208 121 3 7 chr3 221296975 221297281 -6227297 + AluSq SINE Alu 1 305 -8 1871 95 95 7 chr3 221297291 221297576 -6227002 + AluSx SINE Alu 2 311 -1 315 206 0 0 chr3 221297613 221297681 -6226897 + L1MC4 LINE L1 7098 7165 -877 580 30 0 0 chr3 221297810 221297877 -6226701 - AluY SINE Alu -29 282 216 1996 142 20 41 chr3 221297969 221298313 -6226265 + MER1B DNA MER1_type 1 337 0 707 200 89 0 chr3 221298733 221298868 -6225710 + FRAM SINE Alu 8 154 -22 324 253 93 78 chr3 221299374 221299597 -6224981 - MIR SINE MIR 0 262 33 1993 138 0 10 chr3 221299597 221299895 -6224683 - AluJo SINE Alu -17 295 1 324 253 93 78 chr3 221299895 221299928 -6224650 - MIR SINE MIR -229 33 2 216 0 0 0 chr3 221300581 221300605 -6223973 + (T)n Simple_repeat Simple_repeat 1 24 0 467 269 120 37 chr3 221300977 221301193 -6223385 - MIR SINE MIR -20 242 9 4369 82 206 35 chr3 221303050 221303755 -6220823 - LTR12 LTR ERV1 0 826 2 2279 116 3 0 chr3 221304125 221304435 -6220143 + AluY SINE Alu 1 311 0 11756 153 26 13 chr3 221304436 221307656 -6216922 + L1MA3 LINE L1 3036 6305 0 726 269 117 52 chr3 221307663 221307987 -6216591 + MLT1J1 LTR MaLR 93 437 -9 1051 152 5 78 chr3 221307990 221308053 -6216525 - MER5A DNA MER1_type 0 189 123 2382 97 0 3 chr3 221308053 221308363 -6216215 + AluSc SINE Alu 1 309 0 1051 152 5 78 chr3 221308363 221308503 -6216075 - MER5A DNA MER1_type -66 123 1 308 339 129 35 chr3 221308591 221309108 -6215470 - L2 LINE L2 -8 3305 2739 43 35 0 0 chr3 221309181 221309238 -6215340 + AT_rich Low_complexity Low_complexity 1 57 0 2357 75 7 0 chr3 221309250 221309543 -6215035 + AluSp SINE Alu 5 299 -14 32 40 0 53 chr3 221309546 221309597 -6214981 + AT_rich Low_complexity Low_complexity 1 48 -24 1006 167 0 11 chr3 221309597 221309783 -6214795 + L1MA3 LINE L1 6119 6302 -3 32 40 0 53 chr3 221309783 221309807 -6214771 + AT_rich Low_complexity Low_complexity 48 72 0 1540 114 27 0 chr3 221310027 221310247 -6214331 - AluSg/x SINE Alu -1 311 86 2425 70 7 7 chr3 221311419 221311720 -6212858 - AluSq SINE Alu -12 301 1 2379 97 10 0 chr3 221311977 221312287 -6212291 + AluSp SINE Alu 1 313 0 188 227 61 45 chr3 221312304 221312370 -6212208 - L2 LINE L2 -69 3203 3137 180 0 0 0 chr3 221313473 221313493 -6211085 + (TA)n Simple_repeat Simple_repeat 1 20 0 2420 75 0 0 chr3 221313496 221313789 -6210789 - AluSx SINE Alu -19 293 1 392 285 32 6 chr3 221313914 221314058 -6210520 - MIR SINE MIR -62 146 25 759 174 0 0 chr3 221314060 221314181 -6210397 - AluJo/FLAM SINE Alu -189 123 3 280 257 140 81 chr3 221314539 221314681 -6209897 - L2 LINE L2 -2 3311 3150 1353 170 100 15 chr3 221314681 221314952 -6209626 + AluSx SINE Alu 1 294 -18 280 257 140 81 chr3 221314952 221315031 -6209547 - L2 LINE L2 -163 3150 3077 41 0 0 0 chr3 221315057 221315098 -6209480 + AT_rich Low_complexity Low_complexity 1 41 0 1933 155 3 0 chr3 221315098 221315382 -6209196 - AluSq SINE Alu -24 289 5 286 297 85 25 chr3 221315708 221315826 -6208752 + MIR SINE MIR 20 144 -64 29 28 0 0 chr3 221316297 221316333 -6208245 + AT_rich Low_complexity Low_complexity 1 36 0 184 330 44 55 chr3 221316763 221316854 -6207724 + L2 LINE L2 3137 3226 -46 399 376 20 10 chr3 221316955 221317152 -6207426 - MIR3 SINE MIR 0 208 10 1091 111 1 26 chr3 221317375 221317560 -6207018 + L1MA8 LINE L1 5596 5777 -394 295 197 88 109 chr3 221317593 221317608 -6206970 - L2 LINE L2 -1 3271 3257 1760 139 9 54 chr3 221317608 221317925 -6206653 - AluJb SINE Alu -9 303 1 295 197 88 109 chr3 221317925 221318046 -6206532 - L2 LINE L2 -15 3257 3138 2875 126 16 20 chr3 221318074 221318583 -6205995 + L1MA8 LINE L1 5784 6290 -1 23 33 0 0 chr3 221318583 221318613 -6205965 + AT_rich Low_complexity Low_complexity 1 30 0 1819 146 36 0 chr3 221319198 221319472 -6205106 + AluJo SINE Alu 1 284 -28 189 107 0 0 chr3 221319477 221319505 -6205073 + (CAAT)n Simple_repeat Simple_repeat 1 28 0 367 210 16 42 chr3 221319887 221320049 -6204529 + MIR SINE MIR 112 234 -28 270 319 72 36 chr3 221320085 221320251 -6204327 - MIR3 SINE MIR -6 202 31 526 29 0 0 chr3 221320318 221320386 -6204192 - AluY SINE Alu -6 305 238 2452 165 5 0 chr3 221320506 221320937 -6203641 + MER41B LTR ERV1 130 562 -73 181 282 26 0 chr3 221321208 221321247 -6203331 + L2 LINE L2 3217 3256 -16 216 254 17 0 chr3 221321923 221321982 -6202596 + MIR SINE MIR 70 129 -133 1313 289 79 28 chr3 221322205 221322409 -6202169 + L2 LINE L2 660 852 -2462 2048 129 7 10 chr3 221322409 221322711 -6201867 - AluSx SINE Alu -11 301 1 1313 289 79 28 chr3 221322711 221323038 -6201540 + L2 LINE L2 852 1218 -2096 4136 144 22 12 chr3 221323055 221323778 -6200800 - L1PA16 LINE L1 -9 6157 5428 2758 85 95 7 chr3 221323778 221324190 -6200388 + LTR7 LTR ERV1 1 448 -2 19582 98 4 19 chr3 221324192 221327224 -6197354 + HERVH LTR ERV1 1 2987 -4726 877 128 20 0 chr3 221327218 221327366 -6197212 + HERVH LTR ERV1 3140 3290 -4423 * 3176 113 4 6 chr3 221327356 221327859 -6196719 + HERVH LTR ERV1 3492 3993 -3720 4222 137 0 1 chr3 221327861 221328524 -6196054 + HERVH LTR ERV1 4488 5149 -2564 1280 139 19 0 chr3 221328525 221328741 -6195837 + HERVH LTR ERV1 5600 5819 -1894 2205 98 48 13 chr3 221328741 221329117 -6195461 + HERVH LTR ERV1 7324 7712 -1 2683 72 111 5 chr3 221329118 221329523 -6195055 + LTR7 LTR ERV1 1 448 -2 4302 191 20 5 chr3 221329525 221330556 -6194022 - L1PA16 LINE L1 -734 5432 4383 201 143 0 0 chr3 221330561 221330596 -6193982 + (TG)n Simple_repeat Simple_repeat 2 36 0 23 33 0 0 chr3 221330625 221330655 -6193923 + AT_rich Low_complexity Low_complexity 1 30 0 3918 108 0 20 chr3 221330655 221330703 -6193875 - L1PB1 LINE L1 -8 6143 6096 2250 121 0 0 chr3 221330703 221331000 -6193578 - AluSc SINE Alu -12 297 1 3918 108 0 20 chr3 221331000 221331544 -6193034 - L1PB1 LINE L1 -55 6096 5563 14642 206 8 5 chr3 221331546 221335568 -6189010 - L1PB1 LINE L1 -669 5482 1456 1155 195 24 0 chr3 221335570 221335821 -6188757 - L1MEc LINE L1 -1762 4453 4197 2098 263 50 34 chr3 221335824 221336475 -6188103 + L2 LINE L2 1206 1872 -1442 180 0 0 0 chr3 221336475 221336495 -6188083 + (CAAAA)n Simple_repeat Simple_repeat 5 24 0 2098 263 50 34 chr3 221336495 221336577 -6188001 + L2 LINE L2 1872 1951 -1363 1487 273 105 30 chr3 221336584 221337343 -6187235 + L2 LINE L2 2488 3310 -3 224 311 219 0 chr3 221338035 221338154 -6186424 + MIR3 SINE MIR 17 161 -47 333 301 56 51 chr3 221338950 221339146 -6185432 - MIR3 SINE MIR -11 197 1 332 113 11 94 chr3 221339429 221339814 -6184764 + (TA)n Simple_repeat Simple_repeat 1 352 0 2301 97 0 7 chr3 221339814 221340112 -6184466 - AluSg SINE Alu -14 296 1 2956 227 28 46 chr3 221340460 221341145 -6183433 - L1MEc LINE L1 -2924 3291 2595 848 127 0 0 chr3 221341145 221341279 -6183299 + L1MA2 LINE L1 6171 6304 0 2956 227 28 46 chr3 221341279 221342111 -6182467 - L1MEc LINE L1 -3620 2595 1837 7428 78 10 1 chr3 221342493 221343605 -6180973 - L1P LINE L1 -735 5419 4294 6132 26 3 3 chr3 221343605 221344325 -6180253 + L1PA5 LINE L1 5433 6153 -1 281 250 0 29 chr3 221344331 221344399 -6180179 - MIR SINE MIR -147 115 50 1195 235 18 61 chr3 221345087 221345478 -6179100 + MLT1A2 LTR MaLR 1 374 0 25 51 0 0 chr3 221346089 221346128 -6178450 + AT_rich Low_complexity Low_complexity 1 39 0 394 289 21 21 chr3 221346128 221346270 -6178308 + L1MCa LINE L1 1393 1534 -4892 250 280 47 7 chr3 221346275 221346425 -6178153 + L1MCa LINE L1 1775 1930 -4677 1975 249 57 112 chr3 221346573 221346735 -6177843 + L1MCa LINE L1 2152 2321 -4105 1601 173 82 23 chr3 221346735 221347087 -6177491 - THE1C LTR MaLR -2 373 1 1975 249 57 112 chr3 221347087 221348094 -6176484 + L1MCa LINE L1 2321 3382 -3044 907 188 50 6 chr3 221348094 221348254 -6176324 - FRAM SINE Alu -10 166 1 1975 249 57 112 chr3 221348254 221349401 -6175177 + L1MCa LINE L1 3382 4447 -1979 681 290 97 5 chr3 221349399 221349823 -6174755 + L1M4 LINE L1 2445 2907 -3239 * 416 298 153 0 chr3 221349973 221350215 -6174363 + L1M4 LINE L1 3593 3871 -2275 2142 112 3 3 chr3 221350677 221350964 -6173614 - AluSx SINE Alu -24 288 2 766 239 38 44 chr3 221352364 221352599 -6171979 + MIR SINE MIR 32 262 0 312 252 214 15 chr3 221352654 221352785 -6171793 - MIR3 SINE MIR -35 173 17 273 0 0 0 chr3 221352810 221352841 -6171737 - U6 snRNA snRNA -76 31 1 253 234 16 0 chr3 221354076 221354140 -6170438 + MLT1K LTR MaLR 522 586 -2 1355 111 0 0 chr3 221354420 221354592 -6169986 - AluSc SINE Alu -6 303 132 2309 71 0 14 chr3 221354592 221354886 -6169692 - AluY SINE Alu -19 292 3 425 364 0 0 chr3 221354888 221355020 -6169558 + MIR3 SINE MIR 54 185 -23 1978 159 38 37 chr3 221355124 221355674 -6168904 + MLT2A2 LTR ERVL 1 554 0 263 252 113 35 chr3 221355842 221355957 -6168621 - L2 LINE L2 -1 3312 3189 433 276 110 6 chr3 221356063 221356226 -6168352 - MIR SINE MIR 0 262 83 370 318 51 51 chr3 221356406 221356601 -6167977 + L3 LINE CR1 1376 1570 -7 272 297 27 45 chr3 221357327 221357438 -6167140 - MIR3 SINE MIR -45 163 55 1504 85 10 5 chr3 221357683 221357882 -6166696 - AluSp SINE Alu -19 294 95 208 296 40 112 chr3 221358762 221358887 -6165691 - L2 LINE L2 -31 3241 3126 22 35 6 0 chr3 221359059 221359132 -6165446 + AT_rich Low_complexity Low_complexity 1 36 0 2779 7 0 0 chr3 221359397 221359698 -6164880 - AluYa5 SINE Alu -10 301 1 283 304 86 27 chr3 221360807 221361002 -6163576 + MIR3 SINE MIR 31 222 -40 298 263 247 16 chr3 221361102 221361292 -6163286 + L2 LINE L2 3079 3312 -1 30 0 0 0 chr3 221362817 221362847 -6161731 + AT_rich Low_complexity Low_complexity 1 30 0 306 280 0 19 chr3 221362889 221362996 -6161582 + A-rich Low_complexity Low_complexity 5 109 0 1078 262 113 51 chr3 221363119 221363442 -6161136 - L1MD2 LINE L1 -1 6358 5988 2158 109 7 3 chr3 221363442 221363735 -6160843 - AluSx SINE Alu -18 294 1 1078 262 113 51 chr3 221363735 221363942 -6160636 - L1MD2 LINE L1 -371 5988 5795 659 256 17 6 chr3 221364410 221364582 -6159996 - MER5B DNA MER1_type -4 174 1 940 185 6 6 chr3 221364922 221365100 -6159478 + MER5B DNA MER1_type 1 178 0 202 274 17 120 chr3 221365388 221365431 -6159147 - MIR SINE MIR -121 141 95 561 228 93 37 chr3 221365431 221365593 -6158985 + MER96 DNA MER1_type 5 175 0 202 274 17 120 chr3 221365593 221365666 -6158912 - MIR SINE MIR -167 95 37 1921 206 57 29 chr3 221365747 221366237 -6158341 + MLT1D LTR MaLR 1 504 -1 479 335 124 19 chr3 221367310 221367576 -6157002 + L3 LINE CR1 1261 1554 -23 1128 92 0 0 chr3 221367739 221367881 -6156697 + AluSq/x SINE Alu 1 142 -171 2255 110 0 7 chr3 221367884 221368183 -6156395 + AluSx SINE Alu 1 297 -15 553 263 164 0 chr3 221369179 221369331 -6155247 + MER5A DNA MER1_type 12 188 -1 385 318 37 30 chr3 221369447 221369642 -6154936 - MIR SINE MIR -50 212 19 1935 127 7 3 chr3 221370294 221370578 -6154000 - AluJb SINE Alu -22 290 6 526 258 0 30 chr3 221371915 221372047 -6152531 - MIR SINE MIR -87 175 48 252 273 0 0 chr3 221372466 221372521 -6152057 - MER8 DNA MER2_type 0 239 185 2369 56 0 40 chr3 221372529 221372851 -6151727 - AluY SINE Alu -1 310 2 222 299 76 35 chr3 221373003 221373147 -6151431 - MIR3 SINE MIR -1 207 58 2035 69 0 0 chr3 221373378 221373624 -6150954 - AluSc SINE Alu -63 246 1 3061 187 44 11 chr3 221373630 221373736 -6150842 + Tigger2 DNA MER2_type 59 160 -2558 1841 38 5 0 chr3 221373736 221373989 -6150589 + AluSp SINE Alu 70 323 0 3061 187 44 11 chr3 221373989 221374544 -6150034 + Tigger2 DNA MER2_type 160 744 -1974 1420 161 8 0 chr3 221374605 221374854 -6149724 + Tigger2 DNA MER2_type 2458 2708 -10 4129 54 4 2 chr3 221374999 221375521 -6149057 - L1PA7 LINE L1 -6 6148 5626 598 281 130 77 chr3 221375680 221376186 -6148392 - L1 LINE L1 -1763 4383 3851 302 206 8 153 chr3 221376893 221377024 -6147554 - MIR3 SINE MIR -6 202 91 270 0 0 0 chr3 221378637 221378667 -6145911 + (CA)n Simple_repeat Simple_repeat 2 31 0 535 190 123 34 chr3 221378676 221378855 -6145723 - MIR SINE MIR -2 260 66 2339 95 0 0 chr3 221380045 221380340 -6144238 - AluSq SINE Alu -18 295 1 324 159 32 0 chr3 221380350 221380413 -6144165 - L1MC4 LINE L1 0 8042 7978 571 266 111 15 chr3 221380481 221380639 -6143939 + L1ME4a LINE L1 5685 5827 -294 1770 172 30 43 chr3 221380639 221380862 -6143716 - MLT1B LTR MaLR 0 390 173 2371 100 0 0 chr3 221380862 221381161 -6143417 - AluSg SINE Alu -7 303 5 1770 172 30 43 chr3 221381161 221381332 -6143246 - MLT1B LTR MaLR -217 173 1 571 266 111 15 chr3 221381332 221381571 -6143007 + L1ME4a LINE L1 5827 6120 -1 296 342 0 25 chr3 221381617 221381737 -6142841 - MIR SINE MIR -56 206 90 1955 169 0 3 chr3 221381821 221382123 -6142455 + AluJb SINE Alu 3 303 -9 22 0 0 0 chr3 221382288 221382310 -6142268 + AT_rich Low_complexity Low_complexity 1 22 0 21 0 0 0 chr3 221382357 221382378 -6142200 + AT_rich Low_complexity Low_complexity 1 21 0 3004 114 96 0 chr3 221382383 221382864 -6141714 + L1PA13 LINE L1 5637 6163 0 2247 93 4 0 chr3 221384199 221384479 -6140099 - AluSq SINE Alu -32 281 1 318 26 0 0 chr3 221384491 221384530 -6140048 + (CA)n Simple_repeat Simple_repeat 2 40 0 252 59 0 0 chr3 221384530 221384564 -6140014 + (GA)n Simple_repeat Simple_repeat 1 34 0 1908 149 71 32 chr3 221384633 221385170 -6139408 + MLT2A2 LTR ERVL 1 554 0 191 245 94 0 chr3 221385190 221385243 -6139335 + MIR SINE MIR 83 140 -68 665 213 81 38 chr3 221385920 221386080 -6138498 - FAM SINE Alu -8 167 1 258 214 0 54 chr3 221386100 221386156 -6138422 - L3 LINE CR1 -9 1568 1516 232 302 0 0 chr3 221386204 221386267 -6138311 - MER5A DNA MER1_type -40 149 87 1128 125 0 0 chr3 221386271 221386423 -6138155 - AluSc SINE Alu -12 297 146 1175 103 0 0 chr3 221386607 221386752 -6137826 - AluSg SINE Alu -165 145 1 435 331 0 0 chr3 221386863 221386984 -6137594 - MIR SINE MIR -58 150 30 187 167 0 0 chr3 221387081 221387111 -6137467 + L3 LINE CR1 1406 1435 -142 289 352 78 37 chr3 221387347 221387617 -6136961 + L2 LINE L2 2568 2848 -466 2245 104 0 0 chr3 221387672 221387961 -6136617 - AluSg SINE Alu -21 289 1 543 339 26 10 chr3 221388499 221388691 -6135887 - MIR SINE MIR -32 230 36 765 281 67 45 chr3 221388986 221389388 -6135190 - LTR16A1 LTR ERVL 0 457 43 195 69 0 0 chr3 221389388 221389417 -6135161 + (CAAAA)n Simple_repeat Simple_repeat 2 30 0 765 281 67 45 chr3 221389417 221389459 -6135119 - LTR16A1 LTR ERVL -414 43 3 22 35 0 0 chr3 221390371 221390400 -6134178 + AT_rich Low_complexity Low_complexity 1 29 0 25 51 0 0 chr3 221390778 221390817 -6133761 + AT_rich Low_complexity Low_complexity 1 39 0 406 281 98 54 chr3 221392133 221392357 -6132221 + MIR SINE MIR 29 262 0 1189 86 0 25 chr3 221392657 221392845 -6131733 + AluSg/x SINE Alu 126 309 0 23 86 0 0 chr3 221393487 221393545 -6131033 + AT_rich Low_complexity Low_complexity 1 58 0 1603 185 7 30 chr3 221394056 221394359 -6130219 + AluSx SINE Alu 1 296 -16 1061 147 15 66 chr3 221396034 221396231 -6128347 - AluJo SINE Alu -18 294 108 1865 169 0 10 chr3 221396428 221396735 -6127843 + AluJb SINE Alu 1 304 -8 795 198 54 0 chr3 221397135 221397302 -6127276 - MER97a DNA MER1_type? -716 178 3 333 0 0 0 chr3 221397432 221397469 -6127109 + (CA)n Simple_repeat Simple_repeat 2 38 0 372 158 0 0 chr3 221397469 221397545 -6127033 + GA-rich Low_complexity Low_complexity 1 76 0 187 316 66 13 chr3 221398361 221398437 -6126141 - L2 LINE L2 0 3272 3193 219 279 85 70 chr3 221398696 221398825 -6125753 + L2 LINE L2 3138 3268 -4 228 310 28 83 chr3 221399891 221400036 -6124542 + L2 LINE L2 3168 3304 -9 278 340 82 32 chr3 221400533 221400848 -6123730 - MER102b DNA MER1_type 0 341 11 2324 65 0 0 chr3 221401189 221401503 -6123075 - AluSc SINE Alu 0 314 1 213 65 0 0 chr3 221401798 221401829 -6122749 + (CA)n Simple_repeat Simple_repeat 2 32 0 201 136 17 51 chr3 221403011 221403070 -6121508 + GA-rich Low_complexity Low_complexity 4 60 0 1629 155 38 48 chr3 221403262 221403553 -6121025 + AluJo SINE Alu 1 288 -24 308 357 43 22 chr3 221404071 221404256 -6120322 - MER5A DNA MER1_type 0 189 1 181 0 69 0 chr3 221406607 221406636 -6117942 + (TCTA)n Simple_repeat Simple_repeat 2 32 0 3068 28 0 4 chr3 221407268 221407710 -6116868 - L1P1 LINE L1 -714 5441 5001 * 32211 39 31 2 chr3 221407709 221411894 -6112684 - L1P1 LINE L1 -1825 4321 12 24072 64 0 6 chr3 221412091 221416974 -6107604 - L1PA6 LINE L1 -1 6153 1297 2087 118 21 3 chr3 221416974 221417261 -6107317 - AluSq SINE Alu -21 292 1 3786 200 69 3 chr3 221417324 221418493 -6106085 - L1MB5 LINE L1 -2 6172 4919 247 269 131 8 chr3 221419385 221419515 -6105063 + MLT1J LTR MaLR 1 146 -365 3408 106 3 60 chr3 221419588 221419758 -6104820 + L1MA3 LINE L1 2536 2714 -4851 1851 167 0 17 chr3 221419758 221420052 -6104526 + AluJb SINE Alu 1 289 -23 3408 106 3 60 chr3 221420052 221420503 -6104075 + L1MA3 LINE L1 2714 3122 -4443 14490 159 24 19 chr3 221420517 221420763 -6103815 + L1MA3 LINE L1 3091 3334 -4390 1444 160 37 68 chr3 221420763 221421101 -6103477 - AluSx SINE Alu 0 329 1 14490 159 24 19 chr3 221421101 221422235 -6102343 + L1MA3 LINE L1 3334 4461 -3263 2284 122 0 0 chr3 221422235 221422546 -6102032 + AluY SINE Alu 1 311 0 14490 159 24 19 chr3 221422546 221425767 -6098811 + L1MA3 LINE L1 4461 7724 0 547 254 125 59 chr3 221425777 221426080 -6098498 + MLT1J1 LTR MaLR 96 418 -28 1036 152 5 78 chr3 221426102 221426165 -6098413 - MER5A DNA MER1_type 0 189 123 2356 97 0 3 chr3 221426165 221426475 -6098103 + AluSc SINE Alu 1 309 0 1036 152 5 78 chr3 221426475 221426615 -6097963 - MER5A DNA MER1_type -66 123 1 467 339 126 37 chr3 221426703 221427250 -6097328 - L2 LINE L2 -8 3305 2708 43 35 0 0 chr3 221427295 221427352 -6097226 + AT_rich Low_complexity Low_complexity 1 57 0 2343 72 7 0 chr3 221427364 221427657 -6096921 + AluSp SINE Alu 5 299 -14 32 40 0 53 chr3 221427660 221427711 -6096867 + AT_rich Low_complexity Low_complexity 1 48 -24 958 167 0 11 chr3 221427711 221427897 -6096681 + L1MA3 LINE L1 6119 6302 -3 32 40 0 53 chr3 221427897 221427921 -6096657 + AT_rich Low_complexity Low_complexity 48 72 0 325 336 80 13 chr3 221427935 221428141 -6096437 - L1M4 LINE L1 -858 5288 5064 1539 114 27 0 chr3 221428141 221428361 -6096217 - AluSg/x SINE Alu -1 311 86 325 336 80 13 chr3 221428361 221428380 -6096198 - L1M4 LINE L1 -1082 5064 5048 561 323 119 26 chr3 221429363 221429750 -6094828 + L1 LINE L1 3999 4421 -1725 2942 59 3 3 chr3 221429877 221430267 -6094311 + L1PA7 LINE L1 5626 6015 -139 1195 235 18 61 chr3 221430505 221430896 -6093682 - MLT1A2 LTR MaLR 0 374 1 312 276 0 23 chr3 221431584 221431671 -6092907 + MIR SINE MIR 50 134 -128 1349 102 27 0 chr3 221432365 221432637 -6091941 + L1PB1 LINE L1 5205 5482 -669 3918 108 0 20 chr3 221432639 221433183 -6091395 + L1PB1 LINE L1 5563 6096 -55 2250 121 0 0 chr3 221433183 221433480 -6091098 + AluSc SINE Alu 1 297 -12 3918 108 0 20 chr3 221433480 221433528 -6091050 + L1PB1 LINE L1 6096 6143 -8 23 33 0 0 chr3 221433528 221433558 -6091020 + AT_rich Low_complexity Low_complexity 1 30 0 201 143 0 0 chr3 221433587 221433622 -6090956 + (CA)n Simple_repeat Simple_repeat 2 36 0 4248 168 19 6 chr3 221433627 221435058 -6089520 + L1PA16 LINE L1 4383 5833 -333 6928 195 7 8 chr3 221435215 221436792 -6087786 - L1 LINE L1 -1116 5030 3455 359 335 18 28 chr3 221436893 221437138 -6087440 + CT-rich Low_complexity Low_complexity 1 242 0 211 368 19 9 chr3 221437247 221437353 -6087225 + CT-rich Low_complexity Low_complexity 2 108 0 2376 49 0 11 chr3 221437568 221437880 -6086698 + AluY SINE Alu 1 309 0 260 308 49 42 chr3 221437972 221438115 -6086463 - L1 LINE L1 -1089 5057 4914 1035 132 30 0 chr3 221438186 221438353 -6086225 - L1PA16 LINE L1 -9 6157 5986 1707 29 0 0 chr3 221438821 221439027 -6085551 - L1P2 LINE L1 -516 5638 5433 * 4758 58 41 1 chr3 221439026 221439754 -6084824 + L1P LINE L1 4297 5053 -1093 327 104 0 0 chr3 221440063 221440111 -6084467 + (TG)n Simple_repeat Simple_repeat 1 48 0 1119 122 33 19 chr3 221440115 221440328 -6084250 + L1MB3 LINE L1 5796 6011 -172 552 269 12 12 chr3 221440331 221440502 -6084076 + CT-rich Low_complexity Low_complexity 1 171 0 332 311 6 22 chr3 221440520 221440700 -6083878 + C-rich Low_complexity Low_complexity 3 179 0 214 283 57 0 chr3 221440700 221440753 -6083825 + polypyrimidine Low_complexity Low_complexity 5 60 0 329 309 13 7 chr3 221440755 221440907 -6083671 + CT-rich Low_complexity Low_complexity 4 156 0 254 306 0 16 chr3 221440914 221440976 -6083602 + C-rich Low_complexity Low_complexity 4 64 0 480 236 11 33 chr3 221440976 221441158 -6083420 + CT-rich Low_complexity Low_complexity 2 179 0 32 67 0 0 chr3 221441359 221441419 -6083159 + AT_rich Low_complexity Low_complexity 1 60 0 650 279 179 57 chr3 221441520 221442261 -6082317 + L1M4 LINE L1 3036 3886 -2260 30 0 0 0 chr3 221442292 221442322 -6082256 + AT_rich Low_complexity Low_complexity 1 30 0 289 175 0 16 chr3 221443568 221443631 -6080947 - MER58 DNA MER1_type -1 2419 2358 468 214 0 68 chr3 221443697 221443736 -6080842 - MER58 DNA MER1_type -105 110 70 2347 87 3 0 chr3 221443736 221444035 -6080543 + AluSx SINE Alu 1 300 -12 468 214 0 68 chr3 221444035 221444112 -6080466 - MER58 DNA MER1_type -145 70 2 287 358 64 0 chr3 221444147 221444320 -6080258 + MER115 DNA AcHobo 83 266 -427 692 258 24 94 chr3 221444344 221444462 -6080116 + MER115 DNA AcHobo 417 542 -151 1687 179 3 10 chr3 221444462 221444763 -6079815 + AluJb SINE Alu 1 299 -13 692 258 24 94 chr3 221444763 221444942 -6079636 + MER115 DNA AcHobo 542 693 0 263 319 74 48 chr3 221445211 221445279 -6079299 - Charlie8 DNA MER1_type -85 256 191 1549 127 5 0 chr3 221445279 221445525 -6079053 + AluSg/x SINE Alu 67 313 0 263 319 74 48 chr3 221445525 221445682 -6078896 - Charlie8 DNA MER1_type -150 191 22 827 203 43 29 chr3 221445721 221445928 -6078650 + MLT2B1 LTR ERVL 3 212 -308 2278 144 31 70 chr3 221445930 221446375 -6078203 + MSTA LTR MaLR 1 428 0 5992 176 27 9 chr3 221446375 221447515 -6077063 + MSTA-int LTR MaLR 1 1161 -490 2015 144 6 18 chr3 221447536 221447876 -6076702 - MER4E LTR ERV1 -19 760 425 320 43 22 0 chr3 221447878 221447924 -6076654 + (TG)n Simple_repeat Simple_repeat 2 48 0 290 316 92 40 chr3 221448079 221448253 -6076325 + MIR3 SINE MIR 20 202 -6 1841 195 53 30 chr3 221448953 221449445 -6075133 - L1MB8 LINE L1 -2 6176 5674 1462 45 6 0 chr3 221449704 221449882 -6074696 - L1PA5 LINE L1 -4 6150 5972 2044 124 31 0 chr3 221451061 221451351 -6073227 + AluSg SINE Alu 1 299 -11 606 164 55 18 chr3 221451592 221451702 -6072876 + MER81 DNA DNA 1 114 0 2941 143 39 19 chr3 221451941 221452319 -6072259 - L1MB2 LINE L1 -1 6170 5776 318 106 0 0 chr3 221452319 221452366 -6072212 + (CA)n Simple_repeat Simple_repeat 1 47 0 2941 143 39 19 chr3 221452366 221452526 -6072052 - L1MB2 LINE L1 -395 5776 5621 296 312 54 0 chr3 221452591 221452684 -6071894 - MER5A DNA MER1_type -84 105 8 527 288 37 25 chr3 221452714 221452877 -6071701 + MIR3 SINE MIR 34 198 -10 378 278 124 41 chr3 221453294 221453488 -6071090 + MER63A DNA MER1_type 1 210 0 447 300 36 14 chr3 221453569 221453709 -6070869 + MER5B DNA MER1_type 1 143 -35 517 133 0 0 chr3 221453711 221453801 -6070777 + L1MA3 LINE L1 3500 3589 -3976 * 8059 144 25 28 chr3 221453797 221455989 -6068589 + L1MA3 LINE L1 5048 7234 -490 2213 102 0 0 chr3 221455989 221456273 -6068305 + AluSx SINE Alu 1 284 -28 8059 144 25 28 chr3 221456273 221456763 -6067815 + L1MA3 LINE L1 7234 7724 0 612 233 20 0 chr3 221456770 221456920 -6067658 + L1ME2 LINE L1 5773 5925 -239 540 243 90 35 chr3 221457027 221457209 -6067369 - L1ME2 LINE L1 -142 6022 5821 1591 168 16 48 chr3 221457209 221457524 -6067054 - AluJb SINE Alu -7 305 1 540 243 90 35 chr3 221457524 221457596 -6066982 - L1ME2 LINE L1 -343 5821 5754 * 709 282 96 14 chr3 221457593 221457884 -6066694 - L1MEc LINE L1 -5940 456 142 270 95 0 0 chr3 221457909 221457951 -6066627 + (TC)n Simple_repeat Simple_repeat 2 43 0 558 294 6 28 chr3 221458313 221458490 -6066088 + MIR3 SINE MIR 30 202 -6 195 283 204 9 chr3 221459868 221459981 -6064597 - MIR SINE MIR -98 164 30 429 232 127 35 chr3 221462789 221462931 -6061647 + MER20 DNA MER1_type 47 201 -18 2391 131 8 0 chr3 221463120 221463486 -6061092 - L1PA13 LINE L1 -8 6155 5787 1710 141 69 17 chr3 221463486 221463833 -6060745 + THE1C LTR MaLR 2 366 -9 665 112 0 0 chr3 221463851 221463949 -6060629 + THE1C LTR MaLR 278 375 0 10318 111 14 34 chr3 221463949 221465560 -6059018 + THE1C-int LTR MaLR 1 1580 0 1926 143 43 32 chr3 221465560 221465931 -6058647 + THE1C LTR MaLR 1 375 0 16835 185 20 11 chr3 221465931 221467311 -6057267 - L1PA13 LINE L1 -371 5792 4426 183 42 0 0 chr3 221467311 221467335 -6057243 + (TTTG)n Simple_repeat Simple_repeat 2 25 0 16835 185 20 11 chr3 221467335 221470084 -6054494 - L1PA13 LINE L1 -1737 4426 1615 522 303 78 47 chr3 221470214 221470534 -6054044 - MLT1I LTR MaLR -65 344 15 280 309 65 4 chr3 221470754 221470984 -6053594 - L1ME2 LINE L1 -581 5581 5338 235 158 18 18 chr3 221471041 221471098 -6053480 - L1MEd LINE L1 -5084 1035 979 1980 124 11 14 chr3 221471168 221471478 -6053100 + AluY SINE Alu 1 309 0 573 340 128 40 chr3 221471601 221472131 -6052447 - L1MEd LINE L1 -5363 756 180 452 207 23 0 chr3 221472133 221472220 -6052358 + MER92C LTR ERV1 1 89 -465 401 149 0 0 chr3 221472414 221472481 -6052097 + MER92C LTR ERV1 484 550 -4 3951 135 27 79 chr3 221472917 221473146 -6051432 - L1MA4 LINE L1 -6 6294 6055 1920 150 0 32 chr3 221473146 221473459 -6051119 + AluSx SINE Alu 1 303 -9 3951 135 27 79 chr3 221473459 221474105 -6050473 - L1MA4 LINE L1 -245 6055 5464 385 177 21 21 chr3 221474112 221474208 -6050370 + MER31-int LTR ERV1 1046 1141 -3795 539 250 18 26 chr3 221474716 221474944 -6049634 + MER31-int LTR ERV1 1686 1911 -3025 1172 256 38 58 chr3 221475188 221475797 -6048781 + MER31-int LTR ERV1 2470 3066 -1870 2717 246 45 65 chr3 221476353 221477454 -6047124 + MER31-int LTR ERV1 3171 4249 -687 421 216 121 61 chr3 221477455 221477686 -6046892 + LTR37A LTR ERV1 1 245 -181 3599 130 17 5 chr3 221478064 221478649 -6045929 - LTR49 LTR ERV1 -3 592 1 398 204 10 31 chr3 221479048 221479146 -6045432 + MER92C LTR ERV1 1 96 -458 1295 219 71 22 chr3 221479274 221479639 -6044939 + MSTD LTR MaLR 2 384 -12 332 115 16 0 chr3 221479732 221479793 -6044785 + MER92C LTR ERV1 491 552 -2 371 306 50 72 chr3 221479796 221479976 -6044602 - L1MEd LINE L1 -5937 182 7 646 168 27 129 chr3 221480749 221481046 -6043532 - LTR34 LTR ERV1 -235 461 140 311 238 48 19 chr3 221481134 221481239 -6043339 - MER4C LTR ERV1 -352 113 6 2064 138 97 0 chr3 221481447 221481787 -6042791 - MER83C LTR ERV1 0 373 1 1492 199 36 0 chr3 221481933 221482049 -6042529 + AluJb SINE Alu 1 111 -201 189 0 0 0 chr3 221482049 221482070 -6042508 + (TAAAA)n Simple_repeat Simple_repeat 2 22 0 1492 199 36 0 chr3 221482070 221482234 -6042344 + AluJb SINE Alu 111 291 -21 3143 122 91 24 chr3 221482312 221482893 -6041685 + LTR29 LTR ERV1 1 620 -2 3648 150 44 29 chr3 221483037 221483737 -6040841 + MER50 LTR ERV1 1 711 -23 805 277 29 29 chr3 221483772 221484010 -6040568 - MIR SINE MIR -20 242 5 25 31 0 0 chr3 221484072 221484104 -6040474 + AT_rich Low_complexity Low_complexity 1 32 0 227 338 0 0 chr3 221484411 221484485 -6040093 - LTR28 LTR ERV1 -42 978 905 460 228 95 81 chr3 221484587 221484659 -6039919 - LTR1B LTR ERV1 -328 498 429 2344 111 0 0 chr3 221484659 221484965 -6039613 - AluSx SINE Alu -6 306 1 460 228 95 81 chr3 221484965 221485103 -6039475 - LTR1B LTR ERV1 -397 429 285 359 314 122 12 chr3 221485150 221485322 -6039256 - LTR1 LTR ERV1 -567 218 28 609 198 0 24 chr3 221485628 221485754 -6038824 + MER5C DNA MER1_type 2 124 -200 205 301 72 12 chr3 221486011 221486094 -6038484 + MIR SINE MIR 21 108 -100 1815 154 56 6 chr3 221486272 221486610 -6037968 - MLT1A1 LTR MaLR -1 364 10 498 300 67 14 chr3 221486836 221487046 -6037532 - Charlie8 DNA MER1_type -2185 232 12 546 224 14 10 chr3 221488616 221488757 -6035821 - MIR SINE MIR -64 144 28 355 296 31 0 chr3 221489695 221489793 -6034785 - HAL1 LINE L1 -590 1917 1817 197 321 0 0 chr3 221489913 221489966 -6034612 - L3 LINE CR1 -102 1475 1423 407 300 17 8 chr3 221491096 221491216 -6033362 - MER5B DNA MER1_type -1 177 57 577 176 0 0 chr3 221491216 221491318 -6033260 - AluJo SINE Alu -2 310 209 1008 147 19 0 chr3 221491318 221491475 -6033103 - AluJo SINE Alu -152 160 1 289 238 0 16 chr3 221491480 221491543 -6033035 - MER5B DNA MER1_type -116 62 1 2119 76 20 7 chr3 221492361 221492662 -6031916 - L1PA8 LINE L1 -2 6170 5866 297 301 58 0 chr3 221492762 221492865 -6031713 + MIR3 SINE MIR 95 203 -5 279 0 0 0 chr3 221493637 221493668 -6030910 + (TGAA)n Simple_repeat Simple_repeat 1 31 0 522 296 116 66 chr3 221494339 221494881 -6029697 + L2 LINE L2 2729 3299 -14 284 315 43 43 chr3 221495011 221495173 -6029405 + MIR SINE MIR 56 217 -45 273 338 34 34 chr3 221495868 221496016 -6028562 + MIR SINE MIR 23 170 -92 184 364 45 23 chr3 221497669 221497801 -6026777 - MIR SINE MIR -119 143 9 452 282 102 19 chr3 221498623 221498839 -6025739 - MIR SINE MIR -26 236 3 284 257 0 0 chr3 221499602 221499676 -6024902 - LTR67 LTR ERVL -1 556 483 547 303 7 7 chr3 221499808 221499953 -6024625 - LTR67 LTR ERVL -299 258 114 506 294 52 63 chr3 221500897 221501244 -6023334 + HAL1 LINE L1 15 357 -2150 301 347 52 46 chr3 221501274 221501447 -6023131 + HAL1 LINE L1 420 593 -1914 339 285 38 48 chr3 221501682 221501868 -6022710 + HAL1 LINE L1 628 811 -1696 279 288 61 90 chr3 221502043 221502321 -6022257 - L2 LINE L2 0 3313 3044 495 298 8 0 chr3 221502322 221502446 -6022132 - L2 LINE L2 -1080 2234 2110 668 256 60 19 chr3 221502457 221502824 -6021754 + HAL1 LINE L1 981 1362 -1145 417 54 0 0 chr3 221502840 221502896 -6021682 + (CA)n Simple_repeat Simple_repeat 1 56 0 1281 256 105 25 chr3 221502927 221503565 -6021013 + HAL1 LINE L1 1475 2163 -344 201 163 0 0 chr3 221504186 221504235 -6020343 + GA-rich Low_complexity Low_complexity 2 50 0 323 244 44 103 chr3 221504237 221504456 -6020122 + HAL1 LINE L1 2225 2427 -80 2573 39 0 3 chr3 221504456 221504762 -6019816 + AluY SINE Alu 1 305 -6 323 244 44 103 chr3 221504762 221504813 -6019765 + HAL1 LINE L1 2427 2479 -28 1336 196 59 3 chr3 221504819 221505105 -6019473 + L1PB4 LINE L1 5847 6148 -8 1622 100 18 9 chr3 221505262 221505491 -6019087 - AluSg/x SINE Alu -17 295 65 184 245 0 108 chr3 221505744 221505846 -6018732 + L2 LINE L2 3126 3216 -97 201 39 0 0 chr3 221505898 221505924 -6018654 + (CA)n Simple_repeat Simple_repeat 1 26 0 1521 169 76 136 chr3 221506262 221506812 -6017766 + MLT2B1 LTR ERVL 4 520 0 234 294 0 0 chr3 221507069 221507120 -6017458 - L2 LINE L2 -17 3255 3205 257 217 14 14 chr3 221508400 221508469 -6016109 + (TA)n Simple_repeat Simple_repeat 1 69 0 198 191 0 0 chr3 221508509 221508551 -6016027 + GA-rich Low_complexity Low_complexity 1 42 0 2152 146 0 3 chr3 221508843 221509152 -6015426 + AluSx SINE Alu 1 308 -4 21 36 0 0 chr3 221509675 221509703 -6014875 + AT_rich Low_complexity Low_complexity 1 28 0 23 54 0 0 chr3 221509949 221509986 -6014592 + AT_rich Low_complexity Low_complexity 1 37 0 383 285 64 47 chr3 221510115 221510287 -6014291 + MIR SINE MIR 49 223 -39 186 43 0 0 chr3 221510306 221510329 -6014249 + (CAT)n Simple_repeat Simple_repeat 2 24 0 1961 111 11 7 chr3 221510866 221511173 -6013405 + AluSx SINE Alu 1 308 0 589 196 27 9 chr3 221511362 221511474 -6013104 - MER81 DNA DNA 0 114 1 2457 201 35 26 chr3 221512607 221513114 -6011464 + MLT2B2 LTR ERVL 1 512 -3 1621 74 0 45 chr3 221513151 221513395 -6011183 + L1PA6 LINE L1 5922 6154 0 2323 135 62 48 chr3 221513428 221513973 -6010605 - L1MB3 LINE L1 -53 6130 5573 321 285 66 21 chr3 221514524 221514812 -6009766 - L1M4 LINE L1 -1316 4830 4530 1083 223 110 33 chr3 221514959 221515295 -6009283 + MLT1A1 LTR MaLR 4 365 0 320 305 69 44 chr3 221515878 221516081 -6008497 + L1MEd LINE L1 414 621 -5498 1270 106 65 130 chr3 221516673 221517034 -6007544 + THE1C LTR MaLR 8 431 -26 22 35 0 0 chr3 221518200 221518229 -6006349 + AT_rich Low_complexity Low_complexity 1 29 0 201 147 0 0 chr3 221519444 221519478 -6005100 + (CTG)n Simple_repeat Simple_repeat 2 35 0 225 121 0 0 chr3 221520818 221520851 -6003727 + THE1C LTR MaLR 396 428 0 225 121 0 0 chr3 221522358 221522391 -6002187 + U2 snRNA snRNA 1 33 -155 1866 139 62 59 chr3 221523324 221523711 -6000867 + MLT1B LTR MaLR 3 390 0 387 303 49 38 chr3 221523747 221524034 -6000544 + MLT1L LTR MaLR 1 290 -325 625 319 77 10 chr3 221524121 221524434 -6000144 - MLT1K LTR MaLR -250 338 5 404 329 92 44 chr3 221524469 221524764 -5999814 + L2 LINE L2 3004 3312 -1 2376 108 0 6 chr3 221524817 221525131 -5999447 + AluSx SINE Alu 1 312 0 5343 61 34 24 chr3 221525974 221526732 -5997846 + MER4E LTR ERV1 1 766 0 203 350 93 21 chr3 221526921 221527061 -5997517 - L2 LINE L2 0 3272 3123 546 86 0 12 chr3 221527061 221527142 -5997436 + MADE1 DNA Mariner 1 80 0 302 363 139 34 chr3 221527199 221527466 -5997112 + L2 LINE L2 2977 3271 -1 3020 145 8 8 chr3 221527680 221528183 -5996395 + L1PA16 LINE L1 5648 6150 -16 2011 84 0 0 chr3 221528183 221528434 -5996144 - AluSq SINE Alu -62 251 1 25 51 0 0 chr3 221528895 221528934 -5995644 + AT_rich Low_complexity Low_complexity 1 39 0 1947 103 4 18 chr3 221530245 221530526 -5994052 + AluSx SINE Alu 1 277 -35 207 0 0 0 chr3 221530541 221530564 -5994014 + (CAA)n Simple_repeat Simple_repeat 2 24 0 2178 102 3 3 chr3 221533714 221534009 -5990569 + AluSc SINE Alu 1 295 -14 192 152 0 0 chr3 221534409 221534442 -5990136 + (TA)n Simple_repeat Simple_repeat 2 34 0 249 325 0 8 chr3 221534930 221535050 -5989528 + L1ME3 LINE L1 5050 5168 -978 4386 167 51 28 chr3 221535057 221536292 -5988286 + L1MB7 LINE L1 4906 6165 -19 421 315 108 72 chr3 221536295 221536667 -5987911 + L1MEd LINE L1 1348 1736 -4804 2358 92 13 0 chr3 221536667 221536972 -5987606 + AluSg SINE Alu 1 309 -1 421 315 108 72 chr3 221536972 221537017 -5987561 + L1MEd LINE L1 1736 1778 -4762 310 292 18 22 chr3 221537037 221537227 -5987351 + L1MEd LINE L1 1775 1987 -4575 587 262 143 24 chr3 221537644 221537896 -5986682 - MLT1H LTR MaLR -17 532 251 1132 197 32 5 chr3 221537934 221538152 -5986426 - MER58A DNA MER1_type 0 224 1 2307 116 0 0 chr3 221538312 221538615 -5985963 + AluSq SINE Alu 3 305 -8 423 301 64 26 chr3 221538861 221539203 -5985375 + L1ME3 LINE L1 5597 5951 -219 230 152 22 0 chr3 221539761 221539807 -5984771 - MER46A DNA MER2_type -84 152 106 * 391 95 48 0 chr3 221539784 221539847 -5984731 + Tigger4(Zombi) DNA MER2_type 2663 2728 -3 974 246 18 5 chr3 221540556 221540780 -5983798 + MIR SINE MIR 36 262 0 1804 197 48 39 chr3 221540878 221541213 -5983365 - Charlie1b DNA MER1_type -2239 522 179 1664 143 0 15 chr3 221541213 221541472 -5983106 + AluJo SINE Alu 35 289 -23 1804 197 48 39 chr3 221541472 221541653 -5982925 - Charlie1b DNA MER1_type -2582 179 1 625 345 70 6 chr3 221541745 221542058 -5982520 + L2 LINE L2 2926 3258 -55 904 313 155 28 chr3 221542058 221542815 -5981763 + L2 LINE L2 2462 3309 -4 36271 86 7 15 chr3 221542885 221548517 -5976061 + L1PA6 LINE L1 11 5594 -560 2501 66 0 0 chr3 221548517 221548819 -5975759 + AluY SINE Alu 1 302 -9 36271 86 7 15 chr3 221548819 221549082 -5975496 + L1PA6 LINE L1 5594 5857 -297 2092 74 37 3 chr3 221549184 221549483 -5975095 + L1PA6 LINE L1 5843 6151 -3 302 376 8 0 chr3 221550094 221550219 -5974359 + MIR3 SINE MIR 59 184 -24 32 26 0 0 chr3 221550438 221550477 -5974101 + AT_rich Low_complexity Low_complexity 1 39 0 184 296 65 83 chr3 221551189 221551297 -5973281 + L2 LINE L2 2990 3095 -177 755 220 48 24 chr3 221551838 221552047 -5972531 + L1ME3 LINE L1 5949 6162 0 348 147 27 13 chr3 221552977 221553052 -5971526 + L1MC4a LINE L1 6786 6861 -947 1813 230 113 12 chr3 221553150 221553728 -5970850 + L1MC4 LINE L1 7259 7894 -148 385 231 0 0 chr3 221555442 221555520 -5969058 + MER97c DNA MER1_type? 95 172 -918 257 283 17 64 chr3 221556539 221556772 -5967806 - L1MEc LINE L1 -5546 850 629 494 323 122 27 chr3 221556951 221557288 -5967290 - L1MEc LINE L1 -5945 451 83 29 0 0 0 chr3 221557651 221557680 -5966898 + AT_rich Low_complexity Low_complexity 1 29 0 310 343 9 0 chr3 221558344 221558452 -5966126 + MIR3 SINE MIR 86 194 -14 1803 176 56 25 chr3 221559658 221560187 -5964391 - MLT2A2 LTR ERVL 0 554 1 343 254 0 0 chr3 221560198 221560265 -5964313 + MIR SINE MIR 86 152 -110 469 241 62 0 chr3 221560411 221560523 -5964055 + L2 LINE L2 3190 3308 -5 23273 89 6 1 chr3 221560804 221565106 -5959472 - L1PA7 LINE L1 -4 6430 1581 2087 235 56 7 chr3 221567684 221568259 -5956319 - MER90 LTR ERV1 -11 603 1 672 249 109 71 chr3 221568327 221568776 -5955802 - LTR33 LTR ERVL -53 468 3 454 61 0 0 chr3 221569310 221569376 -5955202 - Alu SINE Alu -4 307 242 2102 101 7 0 chr3 221569476 221569752 -5954826 - AluY SINE Alu -28 283 6 463 193 42 132 chr3 221569767 221569980 -5954598 - MER74B LTR ERVL 0 622 429 236 208 38 0 chr3 221569981 221570023 -5954555 - MER74A LTR ERVL -279 279 236 1822 187 28 50 chr3 221570023 221570302 -5954276 + MLT2D LTR ERVL 1 284 -130 1697 130 51 97 chr3 221570302 221570695 -5953883 + THE1C LTR MaLR 1 375 0 1822 187 28 50 chr3 221570695 221570788 -5953790 + MLT2D LTR ERVL 284 365 -49 1857 155 80 0 chr3 221570788 221571124 -5953454 + MER47A DNA MER2_type 4 366 0 1822 187 28 50 chr3 221571124 221571173 -5953405 + MLT2D LTR ERVL 365 414 0 1059 226 24 8 chr3 221571173 221571410 -5953168 - MER74A LTR ERVL -317 241 1 700 280 74 45 chr3 221572000 221572403 -5952175 + MLT1J1 LTR MaLR 1 415 -31 465 283 54 16 chr3 221572434 221572618 -5951960 + LTR68 LTR ERV1 220 410 -330 334 320 30 69 chr3 221575019 221575222 -5949356 - MIR3 SINE MIR 0 208 14 2145 213 28 62 chr3 221575883 221576596 -5947982 - L1ME1 LINE L1 -5 6161 5473 331 247 11 11 chr3 221577424 221577513 -5947065 - MIR SINE MIR 0 262 174 679 227 28 0 chr3 221577682 221577823 -5946755 - MIR SINE MIR -109 153 9 714 294 27 34 chr3 221578190 221578304 -5946274 + MIR SINE MIR 2 115 -147 2190 237 30 6 chr3 221578304 221578811 -5945767 - LTR40a LTR ERVL 0 519 1 714 294 27 34 chr3 221578811 221578958 -5945620 + MIR SINE MIR 115 261 -1 1053 140 0 0 chr3 221578971 221579149 -5945429 - L1MB3 LINE L1 -7 6176 5999 577 225 50 19 chr3 221579183 221579343 -5945235 - MLT2A2 LTR ERVL -144 309 145 758 142 126 60 chr3 221579343 221579418 -5945160 - L1MB3 LINE L1 -201 5982 5913 2190 96 4 4 chr3 221579418 221579724 -5944854 - AluSc SINE Alu 0 306 1 758 142 126 60 chr3 221579724 221579830 -5944748 - L1MB3 LINE L1 -270 5913 5788 268 269 13 0 chr3 221579832 221579910 -5944668 + (TA)n Simple_repeat Simple_repeat 2 80 0 395 199 12 12 chr3 221579930 221580091 -5944487 + (TA)n Simple_repeat Simple_repeat 1 161 0 1387 214 7 3 chr3 221580107 221580415 -5944163 + L1MA6 LINE L1 4954 5262 -884 326 135 7 0 chr3 221580421 221580479 -5944099 - MLT2A2 LTR ERVL -8 445 394 420 378 0 0 chr3 221580482 221580662 -5943916 + (CATA)n Simple_repeat Simple_repeat 1 180 0 * 696 278 0 0 chr3 221580540 221580720 -5943858 + (TATG)n Simple_repeat Simple_repeat 1 180 0 1246 188 38 62 chr3 221580737 221581239 -5943339 - MLT2A2 LTR ERVL -44 508 1 4372 144 24 21 chr3 221581243 221582199 -5942379 + L1MA6 LINE L1 5264 6297 -3 214 178 0 0 chr3 221583041 221583086 -5941492 + T-rich Low_complexity Low_complexity 1 45 0 2565 123 7 14 chr3 221583486 221583902 -5940676 + L1PB1 LINE L1 5731 6143 -8 206 297 0 14 chr3 221584013 221584087 -5940491 + (CATA)n Simple_repeat Simple_repeat 2 74 0 180 273 23 0 chr3 221584221 221584265 -5940313 - L2 LINE L2 -18 3295 3251 3244 182 76 27 chr3 221584563 221585481 -5939097 - L1MB7 LINE L1 -9 6986 6009 5456 232 38 41 chr3 221585488 221587743 -5936835 - L1MB7 LINE L1 -2155 4802 2617 1883 157 0 3 chr3 221587880 221588206 -5936372 - AluSx SINE Alu 0 325 1 4099 275 68 22 chr3 221588312 221588554 -5936024 - L1MB7 LINE L1 -4765 2113 1884 2566 181 73 47 chr3 221588554 221589262 -5935316 + LTR8A LTR ERV1 1 727 0 4099 275 68 22 chr3 221589262 221590657 -5933921 - L1MB7 LINE L1 -4994 1884 2 1255 191 18 12 chr3 221590893 221591197 -5933381 + MER61C LTR ERV1 1 404 -30 458 303 74 79 chr3 221591495 221591799 -5932779 - MLT1J LTR MaLR -2 509 206 3886 159 78 18 chr3 221591799 221592578 -5932000 + LTR1B LTR ERV1 1 826 0 458 303 74 79 chr3 221592578 221592679 -5931899 - MLT1J LTR MaLR -305 206 106 358 325 45 0 chr3 221592995 221593149 -5931429 + MIR SINE MIR 102 262 0 248 250 218 40 chr3 221593791 221593915 -5930663 - MIR3 SINE MIR -62 146 1 590 292 99 5 chr3 221595783 221595985 -5928593 - MIR SINE MIR 0 262 42 21 36 0 0 chr3 221597196 221597224 -5927354 + AT_rich Low_complexity Low_complexity 1 28 0 891 122 91 142 chr3 221597577 221597852 -5926726 - L1MA6 LINE L1 0 6300 6044 1516 69 5 0 chr3 221597954 221598156 -5926422 - LTR3 LTR ERVK -229 203 1 1320 297 65 20 chr3 221598276 221598849 -5925729 - L2 LINE L2 -4 3309 2688 2153 119 7 0 chr3 221598849 221599142 -5925436 - AluSq SINE Alu -18 295 1 1320 297 65 20 chr3 221599142 221599357 -5925221 - L2 LINE L2 -625 2688 2484 401 192 19 39 chr3 221599370 221599474 -5925104 + MLT1J LTR MaLR 402 503 -8 198 0 0 0 chr3 221599671 221599693 -5924885 + (CAAA)n Simple_repeat Simple_repeat 2 23 0 403 185 118 7 chr3 221599941 221600076 -5924502 - MER3 DNA MER1_type 0 2624 2475 271 237 0 0 chr3 221600087 221600146 -5924432 - MER3 DNA MER1_type -111 98 40 2662 42 0 0 chr3 221601488 221601799 -5922779 - AluY SINE Alu 0 311 1 387 288 14 55 chr3 221601853 221601999 -5922579 - MIR SINE MIR -87 175 36 183 265 0 0 chr3 221602745 221602794 -5921784 + MIR SINE MIR 164 212 -50 206 146 24 0 chr3 221604330 221604371 -5920207 + G-rich Low_complexity Low_complexity 6 47 0 279 0 0 0 chr3 221604398 221604429 -5920149 + (TG)n Simple_repeat Simple_repeat 1 31 0 350 279 70 109 chr3 221604740 221604862 -5919716 - L1M2 LINE L1 -5920 929 804 216 0 0 0 chr3 221604862 221604886 -5919692 + (CGGG)n Simple_repeat Simple_repeat 3 26 0 350 279 70 109 chr3 221604886 221605147 -5919431 - L1M2 LINE L1 -6045 804 561 404 191 28 48 chr3 221605382 221605507 -5919071 - MIR3 SINE MIR -50 158 37 246 301 14 14 chr3 221605675 221605748 -5918830 - L2 LINE L2 0 3272 3200 1377 96 50 23 chr3 221605750 221605969 -5918609 - MER30 DNA MER1_type 0 230 6 575 269 0 28 chr3 221607384 221607525 -5917053 + MIR SINE MIR 20 156 -106 2658 168 22 71 chr3 221607539 221608217 -5916361 - L1MD1 LINE L1 -170 6072 5428 * 4594 173 40 14 chr3 221608215 221608303 -5916275 - L1MA7 LINE L1 0 6877 6793 2550 129 11 60 chr3 221608303 221608753 -5915825 - MSTC LTR MaLR 0 428 1 4594 173 40 14 chr3 221608753 221609720 -5914858 - L1MA7 LINE L1 -84 6793 5795 4194 177 27 2 chr3 221609737 221610091 -5914487 - L1MA7 LINE L1 -1926 4806 4462 1624 178 18 7 chr3 221610091 221610405 -5914173 - AluJb SINE Alu 0 317 1 4194 177 27 2 chr3 221610405 221610925 -5913653 - L1MA7 LINE L1 -2270 4462 3909 2598 122 149 0 chr3 221610931 221611367 -5913211 + MER61D LTR ERV1 1 501 0 4214 242 48 26 chr3 221611381 221613113 -5911465 - L1MA7 LINE L1 -3202 3530 2030 895 215 45 0 chr3 221613113 221613313 -5911265 + MER6B DNA MER2_type 1 209 -1 4214 242 48 26 chr3 221613313 221614435 -5910143 - L1MA7 LINE L1 -4702 2030 935 280 311 11 22 chr3 221614463 221614553 -5910025 - L1MA7 LINE L1 -6287 366 278 260 262 20 6 chr3 221614700 221614787 -5909791 - L1M3de LINE L1 -5639 1014 278 253 288 15 15 chr3 221614825 221614891 -5909687 - L1M3de LINE L1 -6310 343 278 582 356 83 18 chr3 221614993 221615389 -5909189 - L1M3de LINE L1 -5638 1015 594 442 286 53 38 chr3 221615393 221615655 -5908923 - L1M3d LINE L1 -5621 270 5 1403 212 96 10 chr3 221615657 221615733 -5908845 - L1MC/D LINE L1 -801 5441 5373 2163 163 74 3 chr3 221615733 221616125 -5908453 - MSTB LTR MaLR -4 422 3 1403 212 96 10 chr3 221616125 221616545 -5908033 - L1MC/D LINE L1 -869 5373 4901 260 247 55 14 chr3 221616560 221616633 -5907945 + MIR3 SINE MIR 83 158 -50 200 189 38 38 chr3 221617541 221617594 -5906984 - L2 LINE L2 0 3313 3261 272 159 0 32 chr3 221617665 221617728 -5906850 + (TATG)n Simple_repeat Simple_repeat 3 63 0 322 264 0 22 chr3 221617938 221618029 -5906549 - L1MC4 LINE L1 -1340 6702 6614 285 98 0 0 chr3 221618039 221618080 -5906498 + (CA)n Simple_repeat Simple_repeat 2 42 0 1478 152 126 29 chr3 221618899 221619241 -5905337 - THE1C LTR MaLR 0 375 1 201 284 81 0 chr3 221621136 221621210 -5903368 - MIR SINE MIR -115 147 68 569 306 140 0 chr3 221622311 221622533 -5902045 + MER20B DNA MER1_type 45 297 -486 566 219 92 58 chr3 221622691 221622951 -5901627 + MER20B DNA MER1_type 514 782 -1 797 290 86 41 chr3 221623639 221624001 -5900577 - L2 LINE L2 -4 3309 2932 359 332 75 31 chr3 221624003 221624229 -5900349 + L1ME4a LINE L1 5321 5556 -565 687 259 36 5 chr3 221624239 221624432 -5900146 + L1ME4a LINE L1 5597 5795 -326 337 316 67 52 chr3 221624493 221624822 -5899756 - MLT1K LTR MaLR -92 496 163 486 293 0 0 chr3 221624969 221625136 -5899442 + L1 LINE L1 2716 2882 -3264 2190 156 33 32 chr3 221625145 221625694 -5898884 + MLT2A2 LTR ERVL 2 554 0 9180 220 26 20 chr3 221625694 221628534 -5896044 + L1P4 LINE L1 2892 5742 -424 399 222 8 26 chr3 221628538 221628655 -5895923 + L1ME4a LINE L1 5990 6104 -17 2007 125 17 0 chr3 221628677 221628966 -5895612 + AluSq SINE Alu 3 296 -17 277 333 0 0 chr3 221630924 221631005 -5893573 - MIR SINE MIR -75 133 53 28 29 0 0 chr3 221631608 221631643 -5892935 + AT_rich Low_complexity Low_complexity 1 35 0 832 131 0 137 chr3 221631945 221632084 -5892494 - L1M4 LINE L1 -738 5440 5344 2028 107 9 44 chr3 221632084 221632401 -5892177 - AluSg SINE Alu -4 306 1 832 131 0 137 chr3 221632401 221632494 -5892084 - L1M4 LINE L1 -834 5344 5240 3386 195 57 7 chr3 221632515 221633234 -5891344 + L1MB8 LINE L1 5408 6162 -16 1181 188 17 4 chr3 221633525 221633764 -5890814 + L1MA10 LINE L1 5998 6239 -95 628 196 30 0 chr3 221633764 221633897 -5890681 + L1MA10 LINE L1 6190 6326 -8 5009 189 43 9 chr3 221634606 221635701 -5888877 - L1MC1 LINE L1 -6 6327 5197 214 177 16 32 chr3 221636778 221636840 -5887738 + A-rich Low_complexity Low_complexity 1 61 0 324 0 0 0 chr3 221637630 221637666 -5886912 + (CA)n Simple_repeat Simple_repeat 2 37 0 2265 67 3 11 chr3 221639780 221640088 -5884490 + AluY SINE Alu 1 306 0 2145 118 3 0 chr3 221641675 221641964 -5882614 + AluSx SINE Alu 1 290 -22 23 0 0 0 chr3 221643583 221643606 -5880972 + AT_rich Low_complexity Low_complexity 1 23 0 207 231 223 100 chr3 221644604 221644734 -5879844 - MIR SINE MIR -64 198 53 1847 112 98 7 chr3 221645540 221645817 -5878761 - AluSq SINE Alu -11 302 1 209 327 191 0 chr3 221645841 221645951 -5878627 + L2 LINE L2 3140 3270 -2 197 310 71 67 chr3 221646206 221646461 -5878117 + L2 LINE L2 2857 3112 -160 249 344 11 11 chr3 221647516 221647609 -5876969 + L2 LINE L2 2766 2858 -456 243 0 0 0 chr3 221647690 221647717 -5876861 + (A)n Simple_repeat Simple_repeat 1 27 0 1973 111 20 14 chr3 221647767 221648064 -5876514 - AluSg SINE Alu -11 299 1 23 33 0 0 chr3 221649562 221649592 -5874986 + AT_rich Low_complexity Low_complexity 1 30 0 566 272 79 113 chr3 221649611 221649698 -5874880 + L1ME LINE L1 4330 4418 -1728 2322 84 0 7 chr3 221649698 221649997 -5874581 - AluSx SINE Alu -15 297 1 566 272 79 113 chr3 221649997 221650592 -5873986 + L1ME LINE L1 4418 4989 -1157 504 281 67 44 chr3 221650690 221651135 -5873443 + L1ME LINE L1 5270 5721 -400 312 257 99 10 chr3 221651191 221651292 -5873286 - MER94 DNA DNA -7 127 18 1913 138 3 17 chr3 221651328 221651645 -5872933 - AluJb SINE Alu 0 313 1 398 261 26 92 chr3 221651717 221651912 -5872666 - MIR SINE MIR -3 259 78 333 359 82 35 chr3 221652751 221653119 -5871459 + L2 LINE L2 2599 2983 -330 15561 121 14 8 chr3 221653631 221656033 -5868545 + Tigger1 DNA MER2_type 1 2418 0 273 333 206 0 chr3 221656117 221656243 -5868335 - MIR3 SINE MIR -41 167 16 183 219 0 0 chr3 221656574 221656606 -5867972 - MIR SINE MIR -83 125 94 1135 203 32 0 chr3 221656715 221656932 -5867646 + MER58A DNA MER1_type 1 224 0 305 246 14 0 chr3 221657843 221657912 -5866666 - L2 LINE L2 -2 3270 3201 341 298 40 32 chr3 221658422 221658546 -5866032 + MIR3 SINE MIR 83 207 -1 338 269 96 45 chr3 221658698 221658854 -5865724 + MER77 LTR ERV1 74 237 -368 228 248 10 79 chr3 221658844 221658945 -5865633 + MER21B LTR ERV1 141 234 -629 * 23 0 0 0 chr3 221659356 221659379 -5865199 + AT_rich Low_complexity Low_complexity 1 23 0 417 326 8 16 chr3 221659469 221659598 -5864980 - MIR3 SINE MIR -66 142 15 208 367 83 28 chr3 221659890 221659999 -5864579 + L2 LINE L2 3127 3241 -31 1878 180 134 13 chr3 221661130 221661503 -5863075 - MER47B DNA MER2_type 0 418 1 3236 116 0 4 chr3 221662785 221663275 -5861303 - L1P LINE L1 -1161 4985 4498 1968 104 21 4 chr3 221663274 221663554 -5861024 + L1PA11 LINE L1 5870 6154 -20 * 253 327 19 75 chr3 221664260 221664367 -5860211 - MIR3 SINE MIR -102 106 6 216 197 16 33 chr3 221666809 221666870 -5857708 - MIR3 SINE MIR -146 62 3 186 289 0 0 chr3 221667364 221667409 -5857169 - MIR SINE MIR -60 148 104 294 287 0 0 chr3 221667839 221667926 -5856652 + (TTCA)n Simple_repeat Simple_repeat 4 90 0 249 348 93 25 chr3 221667929 221668047 -5856531 - L2 LINE L2 -1 3271 3146 292 267 59 40 chr3 221669028 221669129 -5855449 - L2 LINE L2 -7 3265 3163 2099 129 0 3 chr3 221670656 221670951 -5853627 + AluSg SINE Alu 1 294 -16 739 260 84 29 chr3 221671939 221672320 -5852258 + MLT1E LTR MaLR 6 410 -183 5132 107 7 0 chr3 221672346 221673044 -5851534 - L1PA14 LINE L1 -2 6159 5457 335 311 68 20 chr3 221673549 221673697 -5850881 + MIR3 SINE MIR 19 173 -35 297 281 258 0 chr3 221675719 221675847 -5848731 + MER91A DNA MER1_type 1 161 -35 403 249 88 55 chr3 221676015 221676196 -5848382 + MIR SINE MIR 4 190 -72 524 226 129 19 chr3 221676214 221676369 -5848209 - MER5B DNA MER1_type 0 178 7 416 245 77 58 chr3 221677653 221677861 -5846717 - HAL1 LINE L1 -1 2506 2295 4203 158 44 49 chr3 221678232 221679297 -5845281 - L1MB1 LINE L1 -45 6264 5149 1199 179 0 0 chr3 221679295 221679507 -5845071 + L1MB1 LINE L1 4930 5141 -1005 * 751 323 72 34 chr3 221679530 221679973 -5844605 + L2 LINE L2 2853 3312 -1 256 273 91 0 chr3 221680557 221680645 -5843933 - MIR3 SINE MIR -14 194 99 21 0 0 0 chr3 221680882 221680903 -5843675 + AT_rich Low_complexity Low_complexity 1 21 0 350 242 59 91 chr3 221681195 221681381 -5843197 + MIR3 SINE MIR 2 181 -27 1716 208 70 3 chr3 221681806 221682147 -5842431 + MLT1A1 LTR MaLR 2 365 0 930 266 4 26 chr3 221682242 221682471 -5842107 + MER58A DNA MER1_type 1 224 0 255 266 118 6 chr3 221682611 221682766 -5841812 + MIR3 SINE MIR 31 202 -6 2242 111 0 0 chr3 221683827 221684124 -5840454 + AluSx SINE Alu 1 297 -15 299 331 56 88 chr3 221684512 221684817 -5839761 + L2 LINE L2 2978 3272 0 313 359 47 0 chr3 221685632 221685738 -5838840 + MIR SINE MIR 21 131 -77 815 200 6 12 chr3 221686754 221686914 -5837664 - MER3 DNA MER1_type -1 208 50 547 236 76 0 chr3 221687005 221687149 -5837429 - MER103 DNA DNA -8 158 4 271 362 40 36 chr3 221687588 221687812 -5836766 + L2 LINE L2 2731 2955 -359 200 333 0 0 chr3 221688886 221688940 -5835638 + L2 LINE L2 3002 3055 -217 21 0 0 0 chr3 221690062 221690083 -5834495 + AT_rich Low_complexity Low_complexity 1 21 0 208 273 18 82 chr3 221690545 221690655 -5833923 - MIR SINE MIR -65 143 41 191 319 0 14 chr3 221691354 221691426 -5833152 - MIR3 SINE MIR -5 203 133 2369 78 14 0 chr3 221691440 221691733 -5832845 + AluSc SINE Alu 1 297 -12 395 310 131 0 chr3 221693416 221693561 -5831017 + MIR3 SINE MIR 34 197 -11 328 267 18 121 chr3 221693974 221694139 -5830439 + L2 LINE L2 3122 3269 -3 693 300 51 8 chr3 221694230 221694467 -5830111 - MIR SINE MIR -15 247 1 2727 105 8 3 chr3 221694502 221694864 -5829714 + THE1B LTR MaLR 1 364 0 429 36 0 0 chr3 221695609 221695664 -5828914 + (CA)n Simple_repeat Simple_repeat 1 55 0 245 217 50 17 chr3 221695809 221695869 -5828709 - L3b LINE CR1 -3 1580 1519 29 28 0 0 chr3 221696601 221696637 -5827941 + AT_rich Low_complexity Low_complexity 1 36 0 201 147 0 0 chr3 221697941 221697975 -5826603 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 447 274 73 8 chr3 221697977 221698101 -5826477 - L2 LINE L2 -3 3269 3138 194 255 61 61 chr3 221698150 221698248 -5826330 + L2 LINE L2 2716 2813 -501 9017 42 16 0 chr3 221698707 221700540 -5824038 - L1PA5 LINE L1 0 6154 4304 3331 249 62 19 chr3 221700545 221701628 -5822950 - L1M4 LINE L1 -867 5279 4151 5873 155 12 36 chr3 221701643 221703326 -5821252 - L1MA6 LINE L1 -2 6298 4643 395 310 131 0 chr3 221704883 221705028 -5819550 + MIR3 SINE MIR 34 197 -11 328 267 18 121 chr3 221705441 221705606 -5818972 + L2 LINE L2 3122 3269 -3 693 300 51 8 chr3 221705697 221705934 -5818644 - MIR SINE MIR -15 247 1 2727 105 8 3 chr3 221705969 221706331 -5818247 + THE1B LTR MaLR 1 364 0 429 36 0 0 chr3 221707082 221707137 -5817441 + (CA)n Simple_repeat Simple_repeat 1 55 0 245 217 50 17 chr3 221707282 221707342 -5817236 - L3b LINE CR1 -3 1580 1519 29 28 0 0 chr3 221708074 221708110 -5816468 + AT_rich Low_complexity Low_complexity 1 36 0 201 147 0 0 chr3 221709414 221709448 -5815130 + (TTCA)n Simple_repeat Simple_repeat 1 34 0 447 274 73 8 chr3 221709450 221709574 -5815004 - L2 LINE L2 -3 3269 3138 194 255 61 61 chr3 221709623 221709721 -5814857 + L2 LINE L2 2716 2813 -501 20609 45 3 1 chr3 221710180 221713375 -5811203 - L1PA5 LINE L1 0 6154 2954 333 347 41 0 chr3 221714203 221714324 -5810254 + L2 LINE L2 3188 3313 0 656 267 48 0 chr3 221714707 221714894 -5809684 + L2 LINE L2 3118 3313 0 508 212 240 7 chr3 221714905 221715051 -5809527 + MIR SINE MIR 53 232 -30 191 308 187 0 chr3 221715941 221716048 -5808530 + MIR SINE MIR 35 161 -101 186 265 84 24 chr3 221717416 221717499 -5807079 + MIR3 SINE MIR 114 201 -7 596 305 61 0 chr3 221718673 221718837 -5805741 + MER96 DNA MER1_type 2 175 0 205 234 0 43 chr3 221719117 221719164 -5805414 + MIR SINE MIR 85 129 -133 2646 107 39 48 chr3 221719291 221719729 -5804849 - MER57B LTR ERV1 0 434 1 305 277 64 11 chr3 221719776 221719870 -5804708 + MIR3 SINE MIR 85 183 -25 200 299 175 23 chr3 221719950 221720167 -5804411 + MIR SINE MIR 10 259 -3 212 399 33 27 chr3 221720872 221721055 -5803523 + MIR3 SINE MIR 14 197 -11 328 301 80 63 chr3 221721170 221721409 -5803169 - MIR SINE MIR -17 245 3 333 357 85 37 chr3 221721644 221721972 -5802606 + L2 LINE L2 2917 3260 -12 234 276 29 57 chr3 221723060 221723165 -5801413 + MIR SINE MIR 88 189 -73 538 224 0 9 chr3 221723934 221724050 -5800528 + MER3 DNA MER1_type 95 209 0 258 359 13 6 chr3 221724169 221724303 -5800275 - MIR SINE MIR -66 142 9 26 30 0 0 chr3 221724555 221724588 -5799990 + AT_rich Low_complexity Low_complexity 1 33 0 287 327 25 45 chr3 221725687 221725889 -5798689 + L1ME3A LINE L1 5959 6156 -14 2250 100 0 3 chr3 221725892 221726191 -5798387 - AluSq SINE Alu -15 298 1 276 237 43 21 chr3 221726911 221727004 -5797574 - MIR SINE MIR -109 153 59 213 299 0 46 chr3 221726986 221727073 -5797505 + MIR3 SINE MIR 6 88 -120 * 959 90 0 15 chr3 221727592 221727725 -5796853 + L1MA2 LINE L1 6165 6295 -9 342 233 0 6 chr3 221727817 221727899 -5796679 + MIR SINE MIR 71 151 -57 317 23 0 23 chr3 221728181 221728224 -5796354 + (TG)n Simple_repeat Simple_repeat 2 43 0 226 67 0 0 chr3 221728551 221728581 -5795997 - L1P3 LINE L1 -364 5790 5761 24 0 0 0 chr3 221729911 221729935 -5794643 + AT_rich Low_complexity Low_complexity 1 24 0 382 171 12 24 chr3 221729971 221730053 -5794525 - MLT1F1 LTR MaLR -30 537 457 2164 123 0 3 chr3 221730054 221730355 -5794223 + AluSx SINE Alu 1 300 -12 837 74 0 0 chr3 221730363 221730471 -5794107 - THE1C LTR MaLR -267 108 1 287 301 35 64 chr3 221730803 221730976 -5793602 + MIR SINE MIR 53 220 -42 361 257 98 38 chr3 221731185 221731368 -5793210 + L1ME LINE L1 5628 5821 -349 1627 133 11 114 chr3 221731510 221731877 -5792701 - MER44D DNA MER2_type -2 607 9 210 188 0 42 chr3 221732472 221732520 -5792058 - L2 LINE L2 0 3313 3268 218 319 43 11 chr3 221732582 221732676 -5791902 - MIR3 SINE MIR -4 204 108 753 203 25 25 chr3 221732738 221732901 -5791677 + MER5B DNA MER1_type 16 178 0 14889 173 26 11 chr3 221733211 221734588 -5789990 - L1MA6 LINE L1 -2 6298 4943 1971 140 0 0 chr3 221734588 221734917 -5789661 - AluSx SINE Alu 0 334 6 14889 173 26 11 chr3 221734917 221737560 -5787018 - L1MA6 LINE L1 -1357 4943 2217 652 131 8 49 chr3 221737560 221737682 -5786896 - LTR9 LTR ERV1 -495 117 1 467 312 10 50 chr3 221738650 221738852 -5785726 - MIR SINE MIR -49 213 20 277 271 93 17 chr3 221739066 221739184 -5785394 + MIR3 SINE MIR 82 208 0 481 262 170 0 chr3 221739219 221739360 -5785218 + MER5A DNA MER1_type 25 189 0 741 308 12 17 chr3 221741210 221741450 -5783128 + MIR SINE MIR 13 251 -11 645 324 127 55 chr3 221742067 221742846 -5781732 + L2 LINE L2 1068 1902 -1412 2121 134 0 0 chr3 221743147 221743452 -5781126 - AluSq SINE Alu -8 305 1 485 216 43 0 chr3 221743517 221743633 -5780945 - L1MC/D LINE L1 -2021 5787 5667 202 151 57 0 chr3 221743634 221743687 -5780891 + (CATATA)n Simple_repeat Simple_repeat 5 60 0 707 172 9 0 chr3 221743819 221743935 -5780643 + FLAM_C SINE Alu 1 117 -16 332 222 150 12 chr3 221743998 221744165 -5780413 - L1MC/D LINE L1 -2337 5471 5282 513 318 74 0 chr3 221744193 221744382 -5780196 + L2 LINE L2 1932 2134 -1180 389 281 83 35 chr3 221744424 221744652 -5779926 - L1MC4a LINE L1 -1767 6041 5803 734 320 76 38 chr3 221744674 221745096 -5779482 + L2 LINE L2 2219 2656 -658 1083 184 82 7 chr3 221745204 221745497 -5779081 - Charlie1b DNA MER1_type -4 519 205 1503 180 88 3 chr3 221745508 221745802 -5778776 - MLT1A1 LTR MaLR -46 319 1 849 266 14 9 chr3 221745870 221746088 -5778490 - Charlie1b DNA MER1_type -304 219 1 268 236 106 127 chr3 221746269 221746506 -5778072 + L2 LINE L2 2824 3055 -217 248 322 23 11 chr3 221746793 221746880 -5777698 + L3 LINE CR1 673 760 -817 338 173 0 0 chr3 221747077 221747175 -5777403 - Alu SINE Alu 0 327 230 2451 43 0 0 chr3 221747672 221747984 -5776594 + AluY SINE Alu 3 314 0 2780 236 59 31 chr3 221747991 221749541 -5775037 - L1ME1 LINE L1 -5 6230 4643 10497 178 7 6 chr3 221750189 221753283 -5771295 - L1PB1 LINE L1 -38 6113 3017 692 226 63 11 chr3 221753280 221753550 -5771028 - L1ME1 LINE L1 -1525 4690 4407 * 951 311 78 0 chr3 221753547 221753933 -5770645 - L1ME1 LINE L1 -5937 459 44 702 227 103 13 chr3 221753969 221754269 -5770309 - L1MC5 LINE L1 -26 7935 7609 4770 174 32 8 chr3 221754313 221755181 -5769397 + Tigger1 DNA MER2_type 1 889 -1529 280 196 82 55 chr3 221755193 221755345 -5769233 - L1MC5 LINE L1 -1130 6678 6554 530 294 105 75 chr3 221755347 221755882 -5768696 - L1MC4a LINE L1 -1211 6597 6047 23 108 0 0 chr3 221755898 221755991 -5768587 + AT_rich Low_complexity Low_complexity 1 93 0 1463 257 49 19 chr3 221756063 221756491 -5768087 - L1MC4a LINE L1 -1933 5875 5435 225 214 0 18 chr3 221756557 221756613 -5767965 - L1MC4 LINE L1 -134 7908 7854 921 99 28 16 chr3 221756646 221756901 -5767677 + CT-rich Low_complexity Low_complexity 1 258 0 898 153 121 0 chr3 221756902 221757059 -5767519 - AluJo SINE Alu -32 280 105 2351 83 0 19 chr3 221757083 221757397 -5767181 - AluSc SINE Alu -1 308 1 4229 216 72 7 chr3 221757402 221758602 -5765976 - L1MC4 LINE L1 -207 7835 6480 3566 169 73 4 chr3 221758622 221759308 -5765270 - MER44D DNA MER2_type 0 605 1 222 62 0 0 chr3 221759728 221759760 -5764818 + (TG)n Simple_repeat Simple_repeat 1 32 0 1702 162 0 60 chr3 221759840 221760154 -5764424 - AluJo SINE Alu -17 295 1 286 247 194 0 chr3 221761124 221761217 -5763361 - MIR3 SINE MIR -17 191 81 883 330 56 63 chr3 221761733 221761790 -5762788 + L2 LINE L2 1878 1934 -1380 1867 156 0 20 chr3 221761790 221762091 -5762487 - AluSx SINE Alu -17 295 1 883 330 56 63 chr3 221762091 221762673 -5761905 + L2 LINE L2 1934 2519 -795 1818 166 7 0 chr3 221762673 221762968 -5761610 - AluSx SINE Alu -15 297 1 883 330 56 63 chr3 221762968 221763223 -5761355 + L2 LINE L2 2519 2769 -545 2130 109 3 3 chr3 221763223 221763538 -5761040 - AluSp SINE Alu 0 315 1 883 330 56 63 chr3 221763538 221763650 -5760928 + L2 LINE L2 2769 2880 -434 392 370 65 13 chr3 221763726 221763880 -5760698 + L2 LINE L2 3111 3272 0 1788 94 4 8 chr3 221764237 221764504 -5760074 - L1MA1 LINE L1 0 6302 6037 272 279 63 36 chr3 221764717 221764828 -5759750 - MIR SINE MIR -75 133 20 299 352 42 21 chr3 221765765 221765947 -5758631 + L1ME LINE L1 5490 5680 -441 2331 96 0 0 chr3 221765947 221766240 -5758338 + AluSq SINE Alu 1 293 -20 299 352 42 21 chr3 221766240 221766293 -5758285 + L1ME LINE L1 5680 5730 -391 389 256 0 0 chr3 221766820 221766898 -5757680 + L2 LINE L2 3235 3312 -1 932 147 12 6 chr3 221767338 221767508 -5757070 - L1MB3 LINE L1 -2 6181 6011 233 323 140 18 chr3 221767765 221767929 -5756649 - MIR SINE MIR -3 259 76 216 0 0 0 chr3 221767987 221768011 -5756567 + (T)n Simple_repeat Simple_repeat 1 24 0 187 294 54 87 chr3 221768167 221768259 -5756319 - MIR SINE MIR -72 190 102 774 148 0 30 chr3 221768438 221768573 -5756005 - FLAM_C SINE Alu -2 131 1 2426 92 0 0 chr3 221769190 221769496 -5755082 - AluSq SINE Alu -7 306 1 254 288 72 27 chr3 221770056 221770167 -5754411 + L2 LINE L2 3156 3271 -1 297 100 0 0 chr3 221770312 221770362 -5754216 + (TTCC)n Simple_repeat Simple_repeat 1 50 0 201 242 32 0 chr3 221770385 221770447 -5754131 + A-rich Low_complexity Low_complexity 1 64 0 209 288 0 72 chr3 221771003 221771114 -5753464 + L3 LINE CR1 932 1034 -543 1884 141 0 39 chr3 221771697 221772009 -5752569 + AluSx SINE Alu 1 300 -12 23 0 0 0 chr3 221772104 221772127 -5752451 + AT_rich Low_complexity Low_complexity 1 23 0 480 246 36 22 chr3 221772485 221772623 -5751955 + MIR SINE MIR 106 245 -17 208 350 68 19 chr3 221772919 221773022 -5751556 + MIR3 SINE MIR 52 159 -49 270 356 96 9 chr3 221774465 221774695 -5749883 + L2 LINE L2 2235 2484 -830 5865 92 20 34 chr3 221775249 221776072 -5748506 - L1PA13 LINE L1 -4 6159 5334 2521 52 0 10 chr3 221776072 221776379 -5748199 - AluY SINE Alu -7 304 1 5865 92 20 34 chr3 221776379 221776887 -5747691 - L1PA13 LINE L1 -829 5334 4821 258 254 48 0 chr3 221776903 221776966 -5747612 + L2 LINE L2 3203 3268 -4 1031 223 114 32 chr3 221778112 221778584 -5745994 - MER20B DNA MER1_type -7 776 266 265 147 21 74 chr3 221778626 221778721 -5745857 + (TATAA)n Simple_repeat Simple_repeat 3 92 0 377 235 67 8 chr3 221778721 221778840 -5745738 - MER20B DNA MER1_type -534 249 124 198 0 0 0 chr3 221778846 221778868 -5745710 + (A)n Simple_repeat Simple_repeat 1 22 0 201 245 38 0 chr3 221778923 221778976 -5745602 - MIR SINE MIR -55 153 99 326 269 64 2 chr3 221779967 221780059 -5744519 - MIR SINE MIR -91 117 15 817 167 0 6 chr3 221780252 221780408 -5744170 - LTR32 LTR ERVL 0 471 317 1487 192 40 21 chr3 221780467 221780795 -5743783 - LTR32 LTR ERVL -123 348 15 209 331 16 41 chr3 221780797 221780918 -5743660 + L2 LINE L2 2978 3095 -177 217 314 29 29 chr3 221781100 221781170 -5743408 - L2 LINE L2 -14 3258 3189 2151 110 30 0 chr3 221781294 221781595 -5742983 - AluSp SINE Alu 0 313 4 203 286 18 125 chr3 221781710 221781878 -5742700 - L2 LINE L2 -366 2948 2799 1624 112 0 0 chr3 221782800 221783006 -5741572 + AluSq SINE Alu 1 206 -107 357 82 0 0 chr3 221783006 221783055 -5741523 + AluSq SINE Alu 242 290 -11 629 296 153 21 chr3 221783287 221783574 -5741004 - L2 LINE L2 -1 3312 2988 228 299 8 39 chr3 221784472 221784599 -5739979 - L1M4c LINE L1 -4741 1643 1521 24 0 0 0 chr3 221784719 221784743 -5739835 + AT_rich Low_complexity Low_complexity 1 24 0 977 151 24 18 chr3 221785236 221785432 -5739146 - AluJo SINE Alu 0 316 120 2261 114 3 0 chr3 221785650 221785958 -5738620 - AluSx SINE Alu -3 309 1 2142 100 0 4 chr3 221785963 221786277 -5738301 - AluSc SINE Alu 0 313 1 1747 260 117 40 chr3 221786811 221788038 -5736540 - L1ME LINE L1 -4362 1718 426 545 295 64 57 chr3 221788108 221788545 -5736033 - L1ME LINE L1 -5625 445 6 243 250 0 0 chr3 221788714 221788766 -5735812 - MIR3 SINE MIR 0 208 157 228 172 0 17 chr3 221790399 221790457 -5734121 + (TAGA)n Simple_repeat Simple_repeat 1 57 0 406 306 64 35 chr3 221790972 221791145 -5733433 - MER5B DNA MER1_type 0 178 1 183 129 0 0 chr3 221791971 221792002 -5732576 + (TAA)n Simple_repeat Simple_repeat 2 32 0 2474 78 0 3 chr3 221793301 221793607 -5730971 + AluY SINE Alu 1 305 -6 222 370 50 0 chr3 221793790 221793890 -5730688 - MIR SINE MIR -80 182 78 181 294 0 0 chr3 221794006 221794057 -5730521 - L2 LINE L2 0 3313 3263 299 322 123 26 chr3 221794082 221794309 -5730269 - L2 LINE L2 -170 3143 2895 2350 26 4 0 chr3 221794310 221794579 -5729999 - AluYa5 SINE Alu -11 300 31 2018 126 7 14 chr3 221794969 221795263 -5729315 + AluSx SINE Alu 1 292 -20 235 282 54 34 chr3 221795553 221795670 -5728908 - MIR3 SINE MIR -48 160 56 1704 219 18 0 chr3 221796455 221796839 -5727739 + MER63 DNA MER1_type 672 1062 0 823 191 6 19 chr3 221798386 221798548 -5726030 - L1MC1 LINE L1 -10 6323 6164 857 212 17 0 chr3 221798549 221798728 -5725850 - MER63C DNA MER1_type -576 354 173 3222 154 40 80 chr3 221798735 221798959 -5725619 - L1MC2 LINE L1 -178 6166 5935 207 0 0 0 chr3 221798959 221798982 -5725596 + (TTTTC)n Simple_repeat Simple_repeat 2 24 0 3222 154 40 80 chr3 221798982 221799508 -5725070 - L1MC2 LINE L1 -409 5935 5446 406 270 127 39 chr3 221799510 221799769 -5724809 + L2 LINE L2 1548 1829 -1485 324 269 0 32 chr3 221799952 221800045 -5724533 + L1MC4 LINE L1 6614 6703 -1339 225 0 0 0 chr3 221800092 221800117 -5724461 + (CA)n Simple_repeat Simple_repeat 2 26 0 1241 276 86 103 chr3 221800186 221801398 -5723180 + L2 LINE L2 2110 3305 -8 351 278 83 38 chr3 221801435 221801568 -5723010 - L3 LINE CR1 -188 1389 1251 349 193 126 52 chr3 221801731 221801866 -5722712 - L1ME4a LINE L1 -21 6100 5956 3562 183 60 13 chr3 221801918 221802774 -5721804 - L1MB4 LINE L1 0 6180 5290 19027 48 3 2 chr3 221802775 221805965 -5718613 - L1PA5 LINE L1 -8 6146 2954 338 347 41 0 chr3 221806793 221806914 -5717664 + L2 LINE L2 3188 3313 0 671 267 48 0 chr3 221807299 221807486 -5717092 + L2 LINE L2 3118 3313 0 511 212 240 7 chr3 221807497 221807643 -5716935 + MIR SINE MIR 53 232 -30 194 308 187 0 chr3 221808533 221808640 -5715938 + MIR SINE MIR 35 161 -101 187 265 84 24 chr3 221810008 221810091 -5714487 + MIR3 SINE MIR 114 201 -7 498 286 81 0 chr3 221811264 221811425 -5713153 + MER96 DNA MER1_type 2 175 0 203 234 0 43 chr3 221811705 221811752 -5712826 + MIR SINE MIR 85 129 -133 2426 107 39 48 chr3 221811879 221812317 -5712261 - MER57B LTR ERV1 0 434 1 306 277 64 11 chr3 221812364 221812458 -5712120 + MIR3 SINE MIR 85 183 -25 216 299 175 23 chr3 221812538 221812755 -5711823 + MIR SINE MIR 10 259 -3 229 399 33 27 chr3 221813460 221813643 -5710935 + MIR3 SINE MIR 14 197 -11 363 301 80 63 chr3 221813758 221813997 -5710581 - MIR SINE MIR -17 245 3 351 357 85 37 chr3 221814232 221814560 -5710018 + L2 LINE L2 2917 3260 -12 217 232 137 32 chr3 221815413 221815508 -5709070 + MIR SINE MIR 31 135 -73 275 327 61 44 chr3 221816117 221816710 -5707868 + L1ME4a LINE L1 5331 5933 -188 426 257 0 0 chr3 221817273 221817382 -5707196 - MER117 DNA MER1_type -26 171 63 689 156 0 0 chr3 221819164 221819273 -5705305 + L1MC1 LINE L1 6214 6322 -11 24 0 0 0 chr3 221819316 221819340 -5705238 + AT_rich Low_complexity Low_complexity 1 24 0 1707 189 36 25 chr3 221820024 221820389 -5704189 + MLT1A2 LTR MaLR 1 369 -5 218 56 28 0 chr3 221820389 221820425 -5704153 + (CCA)n Simple_repeat Simple_repeat 1 37 0 23 0 0 0 chr3 221821004 221821027 -5703551 + AT_rich Low_complexity Low_complexity 1 23 0 191 187 99 110 chr3 221821110 221821201 -5703377 + L2 LINE L2 3223 3312 -1 209 269 120 19 chr3 221821344 221821452 -5703126 - MIR SINE MIR -69 193 75 2312 82 3 0 chr3 221821471 221821762 -5702816 - AluSp SINE Alu -21 292 1 436 272 51 19 chr3 221821791 221821949 -5702629 - MIR SINE MIR -33 229 67 184 293 17 0 chr3 221822380 221822438 -5702140 + L2 LINE L2 2949 3007 -265 197 255 21 0 chr3 221822514 221822561 -5702017 + L2 LINE L2 2930 2977 -336 390 288 110 89 chr3 221822634 221822926 -5701652 + L2 LINE L2 3014 3311 -2 218 237 51 0 chr3 221822933 221822992 -5701586 + MIR SINE MIR 117 178 -84 759 161 16 0 chr3 221822995 221823119 -5701459 + FLAM_A SINE Alu 1 126 -7 2289 102 0 7 chr3 221823340 221823644 -5700934 - AluSg SINE Alu -8 302 1 316 309 134 41 chr3 221824212 221824406 -5700172 + L3 LINE CR1 1365 1576 -1 197 65 32 0 chr3 221824483 221824514 -5700064 + (TTCA)n Simple_repeat Simple_repeat 1 32 0 188 211 0 18 chr3 221825902 221825959 -5698619 + CT-rich Low_complexity Low_complexity 2 57 0 585 242 31 0 chr3 221826154 221826282 -5698296 - MER63 DNA MER1_type -276 786 29 237 65 0 0 chr3 221826319 221826350 -5698228 + (TG)n Simple_repeat Simple_repeat 1 31 0 2265 107 0 0 chr3 221827216 221827507 -5697071 - AluSx SINE Alu -21 291 1 201 341 23 34 chr3 221827928 221828016 -5696562 + MER5A DNA MER1_type 55 141 -48 365 261 0 11 chr3 221828411 221828499 -5696079 - L2 LINE L2 0 3313 3227 1822 135 0 28 chr3 221829271 221829641 -5694937 - AluJb SINE Alu 0 362 1 886 191 37 5 chr3 221829996 221830175 -5694403 + MER5A DNA MER1_type 2 189 0 570 291 63 33 chr3 221832307 221832664 -5691914 + L1ME LINE L1 5418 5780 -341 2460 265 82 24 chr3 221832721 221833831 -5690747 + L1MEc LINE L1 2170 3304 -2911 2672 269 106 53 chr3 221833857 221834931 -5689647 + L1MEc LINE L1 3538 4727 -1488 270 0 0 0 chr3 221834931 221834961 -5689617 + (TG)n Simple_repeat Simple_repeat 1 30 0 2672 269 106 53 chr3 221834961 221835500 -5689078 + L1MEc LINE L1 4727 5236 -979 1415 200 25 0 chr3 221835500 221835775 -5688803 + AluJo SINE Alu 1 282 -30 21 82 0 0 chr3 221835788 221835837 -5688741 + AT_rich Low_complexity Low_complexity 1 49 0 633 121 12 0 chr3 221835867 221835950 -5688628 + AluJ/FLAM SINE Alu 2 85 -227 311 136 0 0 chr3 221835950 221835994 -5688584 - THE1B LTR MaLR -320 44 1 263 269 97 11 chr3 221836282 221836375 -5688203 + MIR SINE MIR 64 164 -98 393 368 21 5 chr3 221836997 221837187 -5687391 + MIR SINE MIR 3 195 -67 273 219 78 0 chr3 221837263 221837327 -5687251 - MIR SINE MIR -46 216 148 296 358 106 20 chr3 221837766 221837917 -5686661 - L3 LINE CR1 -25 1552 1389 1767 228 106 55 chr3 221837919 221838541 -5686037 - MLT1E3 LTR MaLR 0 624 1 2096 113 31 0 chr3 221838560 221838851 -5685727 + AluSc SINE Alu 4 303 -6 716 312 129 46 chr3 221838914 221839527 -5685051 - L3 LINE CR1 -298 1279 616 2184 111 3 19 chr3 221839673 221839980 -5684598 - AluSx SINE Alu -8 304 3 220 292 158 38 chr3 221840176 221840377 -5684201 - MIR3 SINE MIR -31 231 11 234 0 0 0 chr3 221840815 221840841 -5683737 + (CA)n Simple_repeat Simple_repeat 1 26 0 1640 182 0 7 chr3 221840899 221841179 -5683399 + AluJo SINE Alu 1 278 -34 327 49 0 0 chr3 221841179 221841220 -5683358 + (CA)n Simple_repeat Simple_repeat 2 42 0 1880 175 122 11 chr3 221841280 221841634 -5682944 + MSTD LTR MaLR 4 396 0 267 235 449 7 chr3 221841769 221841905 -5682673 - MIR SINE MIR -62 200 5 289 277 40 0 chr3 221842636 221842737 -5681841 + Charlie8 DNA MER1_type 50 154 -2263 807 172 0 8 chr3 221842776 221842910 -5681668 - MLT1A1 LTR MaLR -80 285 153 836 187 0 14 chr3 221842910 221843049 -5681529 - FLAM_C SINE Alu -5 138 2 1649 98 0 9 chr3 221843064 221843279 -5681299 - L1PA11 LINE L1 -1 6173 5961 1175 170 100 48 chr3 221843850 221844139 -5680439 - MER33 DNA MER1_type -20 304 1 482 288 106 9 chr3 221844381 221844607 -5679971 + MIR SINE MIR 15 262 0 225 0 0 0 chr3 221844613 221844638 -5679940 + (TG)n Simple_repeat Simple_repeat 2 26 0 217 301 143 10 chr3 221845769 221845885 -5678693 + MIR SINE MIR 30 143 -65 436 268 72 46 chr3 221846704 221846898 -5677680 + MLT1L LTR MaLR 181 379 -236 228 214 0 0 chr3 221847039 221847081 -5677497 + MLT1L LTR MaLR 558 599 -16 387 319 128 67 chr3 221847115 221847520 -5677058 - L2 LINE L2 -5 3267 2838 194 359 137 0 chr3 221847714 221847831 -5676747 + L3 LINE CR1 1417 1549 -28 232 322 35 35 chr3 221848549 221848636 -5675942 - MIR SINE MIR -92 116 30 497 284 134 37 chr3 221848983 221849251 -5675327 - MLT1J1 LTR MaLR -144 306 13 454 253 82 73 chr3 221850361 221850594 -5673984 - L2 LINE L2 -1 3312 3078 2168 134 0 0 chr3 221850749 221851056 -5673522 - AluSx SINE Alu -5 307 1 228 312 278 0 chr3 221851545 221851718 -5672860 - L2 LINE L2 -250 3063 2843 397 269 124 47 chr3 221851745 221852043 -5672535 - MER97c DNA MER1_type? -15 1075 755 776 229 28 44 chr3 221852045 221852200 -5672378 - MER97b DNA MER1_type? -194 859 708 2014 51 4 0 chr3 221852200 221852434 -5672144 - AluSp SINE Alu -25 288 54 776 229 28 44 chr3 221852434 221852527 -5672051 - MER97b DNA MER1_type? -345 708 615 218 267 105 58 chr3 221852730 221852816 -5671762 - L2 LINE L2 -32 3240 3151 2196 124 0 16 chr3 221853262 221853577 -5671001 - AluSx SINE Alu -2 310 1 214 200 0 86 chr3 221854041 221854111 -5670467 + L2 LINE L2 3248 3311 -2 584 268 138 30 chr3 221854324 221854593 -5669985 + LTR16A1 LTR ERVL 158 455 -2 2061 126 11 0 chr3 221855609 221855895 -5668683 + AluSg1 SINE Alu 1 289 -20 325 330 32 48 chr3 221856289 221856477 -5668101 + MER5A DNA MER1_type 2 186 -3 191 103 26 0 chr3 221856546 221856585 -5667993 + (CAA)n Simple_repeat Simple_repeat 3 42 0 2913 237 63 17 chr3 221857240 221857949 -5666629 - MER21B LTR ERV1 -102 761 20 398 179 17 103 chr3 221858028 221858145 -5666433 - MER21B LTR ERV1 -756 107 1 196 319 109 25 chr3 221858149 221858268 -5666310 - MIR3 SINE MIR -78 130 2 2350 87 17 0 chr3 221859362 221859661 -5664917 + AluSq SINE Alu 9 312 -1 234 297 54 0 chr3 221859801 221859875 -5664703 - L1MC4 LINE L1 -1348 6694 6617 180 385 68 17 chr3 221860377 221860494 -5664084 - L2 LINE L2 -6 3266 3144 210 37 0 0 chr3 221860553 221860580 -5663998 + (CAA)n Simple_repeat Simple_repeat 1 27 0 2208 126 29 35 chr3 221860776 221861150 -5663428 - THE1C LTR MaLR -3 372 1 10751 121 28 20 chr3 221861152 221862718 -5661860 - THE1C-int LTR MaLR -2 1578 1 2042 135 46 35 chr3 221862718 221862863 -5661715 - THE1C LTR MaLR 0 375 233 2077 126 17 0 chr3 221862863 221863156 -5661422 - AluSx SINE Alu -14 298 1 2042 135 46 35 chr3 221863156 221863381 -5661197 - THE1C LTR MaLR -142 233 1 251 267 50 0 chr3 221863897 221863957 -5660621 - MER91B DNA MER1_type -126 64 2 224 378 0 12 chr3 221864236 221864318 -5660260 + MIR SINE MIR 21 101 -107 468 261 85 45 chr3 221864386 221864585 -5659993 - L2 LINE L2 -231 3082 2876 217 337 58 47 chr3 221865137 221865327 -5659251 + MIR SINE MIR 1 192 -70 2396 76 7 0 chr3 221866114 221866405 -5658173 + AluY SINE Alu 11 303 -8 385 335 199 6 chr3 221866443 221866774 -5657804 - L3 LINE CR1 -17 1560 1166 216 0 0 0 chr3 221866950 221866974 -5657604 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 216 256 66 83 chr3 221867187 221867308 -5657270 + MIR SINE MIR 113 231 -31 875 190 31 6 chr3 221868176 221868339 -5656239 - MER45A DNA AcHobo -3 175 9 252 313 30 30 chr3 221868387 221868486 -5656092 + MLT1J2 LTR MaLR 118 216 -234 342 216 12 12 chr3 221868566 221868659 -5655919 + MLT1I LTR MaLR 319 399 -10 263 268 246 36 chr3 221869876 221870014 -5654564 + MIR SINE MIR 25 191 -71 1865 211 118 8 chr3 221870971 221871351 -5653227 + MSTB LTR MaLR 1 422 -4 415 250 0 45 chr3 221871618 221871730 -5652848 - MIR SINE MIR -148 114 8 619 286 101 64 chr3 221871915 221872292 -5652286 + MLT1L LTR MaLR 200 590 -25 944 224 6 0 chr3 221872560 221872739 -5651839 + MER5A DNA MER1_type 4 183 -6 1691 178 3 25 chr3 221873247 221873561 -5651017 + L1MB7 LINE L1 5859 6165 -19 220 253 0 67 chr3 221873602 221873677 -5650901 - MIR3 SINE MIR -23 185 116 204 130 65 0 chr3 221874029 221874075 -5650503 + (TA)n Simple_repeat Simple_repeat 1 49 0 288 222 86 12 chr3 221874456 221874537 -5650041 + MER91A DNA MER1_type 1 87 -109 195 139 0 0 chr3 221874614 221874650 -5649928 + (TGAA)n Simple_repeat Simple_repeat 1 36 0 937 214 125 64 chr3 221874705 221875055 -5649523 + L1MC4a LINE L1 5537 5689 -465 944 315 78 18 chr3 221875055 221875493 -5649085 + LTR16B LTR ERVL 1 464 0 937 214 125 64 chr3 221875493 221875631 -5648947 + L1MC4a LINE L1 5689 5817 -337 25 0 0 0 chr3 221875687 221875712 -5648866 + AT_rich Low_complexity Low_complexity 1 25 0 188 318 57 23 chr3 221876428 221876516 -5648062 - L2 LINE L2 -56 3257 3167 1637 188 0 26 chr3 221876973 221877277 -5647301 + AluJo SINE Alu 9 304 -8 190 310 40 40 chr3 221878582 221878682 -5645896 + MIR SINE MIR 23 122 -86 414 0 0 0 chr3 221879041 221879087 -5645491 + (CA)n Simple_repeat Simple_repeat 2 47 0 237 33 0 0 chr3 221879143 221879173 -5645405 + (GA)n Simple_repeat Simple_repeat 1 30 0 1648 154 44 7 chr3 221879283 221879555 -5645023 + AluSx SINE Alu 1 282 -30 4675 75 28 11 chr3 221879576 221880682 -5643896 + MER11A LTR ERVK 1 1266 0 237 341 38 15 chr3 221881336 221881468 -5643110 + L3 LINE CR1 1063 1197 -380 731 232 261 26 chr3 221881542 221881814 -5642764 + L1ME4a LINE L1 5512 5847 -274 3840 218 68 62 chr3 221881821 221882583 -5641995 + L1MB4 LINE L1 1 757 -5889 207 0 0 0 chr3 221882583 221882606 -5641972 + (TTTG)n Simple_repeat Simple_repeat 2 24 0 3840 218 68 62 chr3 221882606 221883901 -5640677 + L1MB4 LINE L1 757 2133 -4513 623 198 54 12 chr3 221883909 221884076 -5640502 + L1MB4 LINE L1 2280 2453 -4193 619 196 42 0 chr3 221884092 221884235 -5640343 + L1MB4 LINE L1 4513 4661 -1983 2183 62 6 75 chr3 221884236 221884373 -5640205 + AluY SINE Alu 1 146 -165 2865 10 0 0 chr3 221884373 221884684 -5639894 + AluYa5 SINE Alu 1 311 0 2183 62 6 75 chr3 221884684 221884867 -5639711 + AluY SINE Alu 146 299 -12 14422 175 69 79 chr3 221884880 221892549 -5632029 + L1MA6 LINE L1 7 7319 -2 3911 218 58 20 chr3 221892564 221893650 -5630928 + L1MB4 LINE L1 4649 5856 -822 8398 43 0 0 chr3 221893650 221895473 -5629105 + L1PA5 LINE L1 4307 6146 -8 3911 218 58 20 chr3 221895473 221896330 -5628248 + L1MB4 LINE L1 5856 6678 0 392 178 141 67 chr3 221896382 221896517 -5628061 + L1ME4a LINE L1 5956 6100 -21 349 278 83 38 chr3 221896680 221896813 -5627765 + L3 LINE CR1 1251 1389 -188 1233 276 86 103 chr3 221896850 221898062 -5626516 - L2 LINE L2 -8 3305 2110 225 0 0 0 chr3 221898131 221898156 -5626422 + (TG)n Simple_repeat Simple_repeat 2 26 0 324 269 0 32 chr3 221898203 221898296 -5626282 - L1MC4 LINE L1 -1339 6703 6614 381 247 145 44 chr3 221898479 221898706 -5625872 - L2 LINE L2 -1485 1829 1580 2880 148 53 2 chr3 221898711 221899217 -5625361 + L1MC1 LINE L1 5415 5946 -387 260 33 0 0 chr3 221899215 221899245 -5625333 + L1PA6 LINE L1 6094 6123 -31 * 3728 165 7 14 chr3 221899368 221899941 -5624637 + L1P LINE L1 4221 4789 -1357 2330 92 13 0 chr3 221899941 221900247 -5624331 + AluSg SINE Alu 1 310 0 3728 165 7 14 chr3 221900247 221900394 -5624184 + L1P LINE L1 4789 4936 -1210 271 173 18 60 chr3 221900504 221900672 -5623906 + GA-rich Low_complexity Low_complexity 4 164 0 14457 186 41 13 chr3 221900780 221904297 -5620281 + L1MA6 LINE L1 2709 6378 -1341 1972 140 0 0 chr3 221904297 221904626 -5619952 + AluSx SINE Alu 6 334 0 14457 186 41 13 chr3 221904626 221906007 -5618571 + L1MA6 LINE L1 6378 7719 0 753 203 25 25 chr3 221906315 221906478 -5618100 - MER5B DNA MER1_type 0 178 16 218 319 43 11 chr3 221906540 221906634 -5617944 + MIR3 SINE MIR 108 204 -4 210 188 0 42 chr3 221906696 221906744 -5617834 + L2 LINE L2 3268 3313 0 206 217 0 22 chr3 221907346 221907392 -5617186 - MIR SINE MIR -200 62 18 1751 123 66 54 chr3 221908208 221908540 -5616038 - MER1B DNA MER1_type 0 337 2 231 324 21 56 chr3 221908671 221908813 -5615765 - MIR SINE MIR -55 207 71 2231 112 0 0 chr3 221909095 221909390 -5615188 + AluSq SINE Alu 5 299 -14 1064 169 0 11 chr3 221909766 221909943 -5614635 + FAM SINE Alu 1 175 0 513 297 99 22 chr3 221909954 221910176 -5614402 - MIR SINE MIR -13 249 11 295 308 125 80 chr3 221911480 221911769 -5612809 + L2 LINE L2 2922 3223 -49 264 59 0 0 chr3 221911773 221911807 -5612771 + (TG)n Simple_repeat Simple_repeat 1 34 0 249 33 0 0 chr3 221911806 221911836 -5612742 + (GA)n Simple_repeat Simple_repeat 1 30 0 * 21 36 0 0 chr3 221911889 221911917 -5612661 + AT_rich Low_complexity Low_complexity 1 28 0 323 306 56 21 chr3 221912191 221912335 -5612243 - MIR SINE MIR 0 262 114 387 293 44 39 chr3 221912733 221912912 -5611666 - MIR SINE MIR -62 146 21 321 317 242 0 chr3 221913633 221913819 -5610759 + MIR SINE MIR 20 250 -12 2894 83 0 0 chr3 221914372 221914747 -5609831 + THE1C LTR MaLR 1 375 0 565 276 113 42 chr3 221915540 221915694 -5608884 - MIR SINE MIR -5 257 79 1532 203 61 21 chr3 221915694 221916069 -5608509 + MLT1B LTR MaLR 1 390 0 565 276 113 42 chr3 221916069 221916153 -5608425 - MIR SINE MIR -183 79 2 309 258 132 71 chr3 221916170 221916340 -5608238 + MIR SINE MIR 27 211 -51 227 287 161 11 chr3 221916678 221916765 -5607813 - L2 LINE L2 -23 3249 3150 433 226 177 8 chr3 221917261 221917385 -5607193 + MIR SINE MIR 57 201 -61 473 302 14 7 chr3 221917627 221917766 -5606812 + L2 LINE L2 3169 3308 -5 22 0 0 0 chr3 221918381 221918403 -5606175 + AT_rich Low_complexity Low_complexity 1 22 0 255 320 116 0 chr3 221919459 221919582 -5604996 - MIR SINE MIR -62 146 1 251 314 92 0 chr3 221919582 221919663 -5604915 - MIR SINE MIR -76 132 30 219 348 0 11 chr3 221919719 221919811 -5604767 + T-rich Low_complexity Low_complexity 5 95 0 708 260 22 0 chr3 221920321 221920502 -5604076 + MER5A DNA MER1_type 1 185 -4 313 310 50 14 chr3 221920510 221920652 -5603926 + MIR SINE MIR 3 150 -58 225 360 12 0 chr3 221921332 221921418 -5603160 - L2 LINE L2 -52 3220 3134 2978 93 14 5 chr3 221921866 221922306 -5602272 - L1PA13 LINE L1 -3 6160 5717 420 267 9 97 chr3 221922889 221923106 -5601472 - MIR SINE MIR -18 244 47 703 264 11 6 chr3 221923618 221923792 -5600786 + MIR SINE MIR 3 177 -85 23 0 0 0 chr3 221924456 221924479 -5600099 + AT_rich Low_complexity Low_complexity 1 23 0 356 309 101 22 chr3 221924964 221925103 -5599475 - L2 LINE L2 -1 3271 3122 225 162 0 0 chr3 221925166 221925203 -5599375 + MER94 DNA DNA 51 87 -47 196 42 0 0 chr3 221925260 221925284 -5599294 + (TTTTA)n Simple_repeat Simple_repeat 2 180 0 2201 22 48 15 chr3 221925284 221925556 -5599022 - AluY SINE Alu -30 281 1 289 265 20 41 chr3 221925858 221925956 -5598622 + Charlie8 DNA MER1_type 119 214 -2203 421 273 88 10 chr3 221925978 221926183 -5598395 + L1ME3A LINE L1 5719 5939 -231 862 139 120 77 chr3 221926686 221926895 -5597683 + MER20 DNA MER1_type 2 219 0 231 235 0 0 chr3 221927081 221927132 -5597446 - MIR SINE MIR -120 142 92 * 408 300 159 60 chr3 221927129 221927412 -5597166 + L2 LINE L2 2804 3058 -255 2327 101 0 16 chr3 221927412 221927729 -5596849 - AluSq SINE Alu -1 312 1 408 300 159 60 chr3 221927729 221927909 -5596669 + L2 LINE L2 3058 3313 0 183 204 0 0 chr3 221927966 221928010 -5596568 + GA-rich Low_complexity Low_complexity 4 47 0 39 0 0 0 chr3 221928473 221928512 -5596066 + AT_rich Low_complexity Low_complexity 1 39 0 2188 109 0 31 chr3 221929435 221929757 -5594821 + AluSx SINE Alu 1 312 0 391 316 65 12 chr3 221930144 221930312 -5594266 - MIR SINE MIR -26 236 60 420 226 0 0 chr3 221930697 221930781 -5593797 + MER21B LTR ERV1 13 96 -767 2219 114 0 3 chr3 221930805 221931102 -5593476 + AluSq SINE Alu 1 296 -17 1083 257 9 35 chr3 221931152 221931490 -5593088 + MER21B LTR ERV1 139 467 -396 1574 207 42 42 chr3 221931524 221931949 -5592629 + MSTB1 LTR MaLR 8 432 0 982 206 77 61 chr3 221931952 221932263 -5592315 + MER21B LTR ERV1 494 809 -54 388 278 195 12 chr3 221932386 221932555 -5592023 + MIR SINE MIR 7 206 -56 491 262 127 29 chr3 221932670 221932914 -5591664 + L2 LINE L2 3046 3313 0 214 319 69 17 chr3 221932999 221933115 -5591463 - MIR3 SINE MIR -9 199 78 268 356 87 0 chr3 221933312 221933427 -5591151 - L3 LINE CR1 -61 1516 1392 266 56 0 0 chr3 221933949 221933985 -5590593 - L1PA8 LINE L1 -440 5732 5697 3117 77 0 12 chr3 221933985 221934414 -5590164 + L1PA8 LINE L1 5745 6168 -4 23 0 0 0 chr3 221934414 221934437 -5590141 + AT_rich Low_complexity Low_complexity 1 23 0 1600 137 90 63 chr3 221934951 221935116 -5589462 + THE1C LTR MaLR 1 160 -215 2019 136 10 3 chr3 221935116 221935411 -5589167 + AluSx SINE Alu 1 297 -15 1600 137 90 63 chr3 221935411 221935610 -5588968 + THE1C LTR MaLR 160 375 0 323 211 42 0 chr3 221935611 221935682 -5588896 + MIR3 SINE MIR 109 182 -26 2234 99 0 3 chr3 221936776 221937070 -5587508 + AluSc SINE Alu 1 293 -16 306 349 37 0 chr3 221937076 221937185 -5587393 + L1ME3A LINE L1 6038 6150 -20 212 114 45 0 chr3 221937983 221938027 -5586551 + T-rich Low_complexity Low_complexity 4 49 0 298 324 142 51 chr3 221938141 221938491 -5586087 + L2 LINE L2 2341 2658 -614 377 226 88 10 chr3 221938491 221938593 -5585985 + MER81 DNA DNA 1 110 -4 298 324 142 51 chr3 221938593 221939057 -5585521 + L2 LINE L2 2658 3254 -18 857 132 11 17 chr3 221939057 221939231 -5585347 + GA-rich Low_complexity Low_complexity 4 176 0 209 260 14 82 chr3 221939307 221939380 -5585198 + L2 LINE L2 3140 3207 -65 243 341 114 30 chr3 221939796 221939963 -5584615 + MER5A DNA MER1_type 9 189 0 198 293 38 66 chr3 221940109 221940215 -5584363 + L2 LINE L2 3191 3293 -20 610 265 61 61 chr3 221940348 221940691 -5583887 + L1ME4a LINE L1 5517 5859 -262 28 29 0 0 chr3 221940843 221940878 -5583700 + AT_rich Low_complexity Low_complexity 1 35 0 581 152 11 0 chr3 221940907 221940999 -5583579 + FLAM_C SINE Alu 29 121 -22 5875 220 55 54 chr3 221941029 221942802 -5581776 + L1MD1 LINE L1 17 1791 -4749 420 105 0 0 chr3 221942802 221942859 -5581719 - Alu SINE Alu -261 57 1 6384 250 63 26 chr3 221942868 221945468 -5579110 + L1MD1 LINE L1 2935 5631 -909 2304 197 21 8 chr3 221945471 221945953 -5578625 + L1MD1 LINE L1 6124 6611 -25 207 69 0 0 chr3 221946465 221946494 -5578084 + (TAA)n Simple_repeat Simple_repeat 1 29 0 468 221 64 111 chr3 221946515 221946666 -5577912 - MER58A DNA MER1_type -2196 224 86 1968 108 77 0 chr3 221946666 221946953 -5577625 - AluSp SINE Alu -4 309 1 468 221 64 111 chr3 221946953 221947036 -5577542 - MER58A DNA MER1_type -2334 86 1 819 180 72 0 chr3 221947303 221947470 -5577108 + LTR47A LTR ERVL 274 452 0 336 287 26 17 chr3 221947498 221947613 -5576965 + MIR SINE MIR 147 262 0 243 0 0 0 chr3 221948308 221948335 -5576243 + (A)n Simple_repeat Simple_repeat 1 27 0 320 238 134 35 chr3 221948455 221948745 -5575833 + L1ME4a LINE L1 5800 6118 -3 2692 23 0 0 chr3 221948748 221949051 -5575527 + AluY SINE Alu 1 303 -8 204 67 0 0 chr3 221949361 221949391 -5575187 + (TTTG)n Simple_repeat Simple_repeat 1 30 0 365 375 71 18 chr3 221949432 221949715 -5574863 + MLT1K LTR MaLR 56 353 -235 6892 133 11 16 chr3 221949739 221950664 -5573914 + L1P LINE L1 4123 5042 -1104 2423 64 0 10 chr3 221950664 221950960 -5573618 + AluY SINE Alu 1 293 -18 6892 133 11 16 chr3 221950960 221951277 -5573301 + L1P LINE L1 5042 5359 -787 1744 325 61 26 chr3 221951414 221952391 -5572187 + L1MCc LINE L1 34 1045 -5378 251 299 15 0 chr3 221952473 221952540 -5572038 + L3 LINE CR1 901 968 -609 218 369 64 14 chr3 221952614 221952755 -5571823 + MIR SINE MIR 5 152 -110 459 0 0 0 chr3 221953753 221953804 -5570774 + (TG)n Simple_repeat Simple_repeat 2 52 0 2263 168 47 14 chr3 221953869 221954315 -5570263 + LOR1b LTR ERV1 1 461 0 479 313 41 15 chr3 221954548 221954743 -5569835 + MIR SINE MIR 63 262 0 312 303 104 68 chr3 221954756 221955112 -5569466 + L2 LINE L2 2371 2740 -574 198 343 151 12 chr3 221955112 221955278 -5569300 + MER5A DNA MER1_type 1 189 0 199 292 146 21 chr3 221955316 221955412 -5569166 + L2 LINE L2 2992 3099 -173 912 163 0 87 chr3 221955486 221955670 -5568908 + MER45A DNA AcHobo 1 168 -10 270 316 53 44 chr3 221955680 221955794 -5568784 + L2 LINE L2 3147 3261 -11 600 274 57 51 chr3 221956723 221957155 -5567423 + L1MC/D LINE L1 5354 5791 -382 21 36 0 0 chr3 221957186 221957214 -5567364 + AT_rich Low_complexity Low_complexity 1 28 0 225 0 0 0 chr3 221957214 221957239 -5567339 + (GA)n Simple_repeat Simple_repeat 2 26 0 1690 168 25 7 chr3 221957328 221957614 -5566964 + AluJb SINE Alu 1 291 -21 931 240 7 49 chr3 221957796 221958083 -5566495 + MER63B DNA MER1_type 1 275 -161 1855 163 10 7 chr3 221958086 221958386 -5566192 - AluJb SINE Alu -11 301 1 232 169 36 60 chr3 221958428 221958511 -5566067 + L1ME4a LINE L1 6040 6120 -1 233 269 193 35 chr3 221958721 221958866 -5565712 - MIR3 SINE MIR -5 203 36 2129 121 0 3 chr3 221958912 221959210 -5565368 + AluSc SINE Alu 1 297 -12 290 312 7 57 chr3 221959354 221959495 -5565083 - MIR SINE MIR -42 220 87 2232 114 0 0 chr3 221959743 221960049 -5564529 - AluSc SINE Alu -3 306 1 432 260 94 8 chr3 221960533 221960660 -5563918 + MIR SINE MIR 60 197 -65 395 37 0 19 chr3 221962410 221962464 -5562114 + (TG)n Simple_repeat Simple_repeat 2 54 0 465 297 129 39 chr3 221963809 221964041 -5560537 + MIR SINE MIR 10 262 0 217 139 28 0 chr3 221964132 221964168 -5560410 + (TG)n Simple_repeat Simple_repeat 2 38 0 246 208 0 0 chr3 221964247 221964300 -5560278 + (TATATG)n Simple_repeat Simple_repeat 5 57 0 596 206 48 0 chr3 221964384 221964530 -5560048 + L1MB7 LINE L1 6017 6169 -15 744 313 16 16 chr3 221965226 221965472 -5559106 - MIR SINE MIR -10 252 7 298 280 0 84 chr3 221966956 221967063 -5557515 - MIR SINE MIR -79 183 86 1679 172 17 14 chr3 221967992 221968283 -5556295 - AluJb SINE Alu -20 292 1 2111 126 3 7 chr3 221970365 221970674 -5553904 + AluY SINE Alu 1 308 -3 287 325 19 32 chr3 221970681 221970835 -5553743 + MIR SINE MIR 51 202 -60 870 177 12 49 chr3 221971284 221971448 -5553130 + AluJb SINE Alu 134 291 -21 21 36 0 0 chr3 221971538 221971566 -5553012 + AT_rich Low_complexity Low_complexity 1 28 0 478 282 29 29 chr3 221972124 221972298 -5552280 + L3 LINE CR1 1166 1339 -238 262 165 198 0 chr3 221972334 221972425 -5552153 + L1MA10 LINE L1 6213 6321 -13 3039 130 64 8 chr3 221972506 221973007 -5551571 + MER1A DNA MER1_type 1 529 0 192 241 76 76 chr3 221973031 221973110 -5551468 + MIR SINE MIR 150 228 -34 258 328 10 10 chr3 221973597 221973715 -5550863 + MIR SINE MIR 59 143 -65 194 296 204 28 chr3 221974680 221974788 -5549790 - MIR SINE MIR 0 262 136 330 251 167 19 chr3 221974858 221975169 -5549409 + L1ME4a LINE L1 5762 6118 -3 2322 74 0 3 chr3 221975724 221976036 -5548542 - AluSq SINE Alu 0 311 1 4959 162 45 45 chr3 221976388 221977307 -5547271 + L1MC3 LINE L1 6707 7629 -156 1530 168 66 36 chr3 221977307 221977610 -5546968 - AluJo SINE Alu 0 312 1 4959 162 45 45 chr3 221977610 221977768 -5546810 + L1MC3 LINE L1 7629 7785 0 1800 136 0 68 chr3 221977793 221978103 -5546475 + AluJo SINE Alu 1 289 -23 545 301 100 8 chr3 221978467 221978706 -5545872 + MIR SINE MIR 2 262 0 2601 182 44 73 chr3 221978750 221978771 -5545807 + L1MC3 LINE L1 6979 6999 -786 2259 117 0 3 chr3 221978771 221979071 -5545507 + AluSx SINE Alu 1 299 -13 2601 182 44 73 chr3 221979071 221979774 -5544804 + L1MC3 LINE L1 6999 7682 -103 1221 175 24 40 chr3 221979778 221980029 -5544549 + AluJb SINE Alu 42 288 -24 578 101 0 55 chr3 221980029 221980138 -5544440 + L1MC3 LINE L1 7683 7785 0 1083 144 15 59 chr3 221980619 221980821 -5543757 + AluJb SINE Alu 1 193 -119 319 154 0 15 chr3 221980840 221980905 -5543673 + Alu SINE Alu 178 241 -59 519 60 0 0 chr3 221981036 221981103 -5543475 + (TA)n Simple_repeat Simple_repeat 2 68 0 22 0 0 0 chr3 221981548 221981570 -5543008 + AT_rich Low_complexity Low_complexity 1 22 0 208 274 0 0 chr3 221981790 221981841 -5542737 + (TA)n Simple_repeat Simple_repeat 1 51 0 254 277 53 11 chr3 221982101 221982195 -5542383 + L2 LINE L2 1968 2065 -1249 1974 147 17 0 chr3 221982212 221982511 -5542067 + AluSx SINE Alu 1 304 -8 471 201 79 154 chr3 221982691 221982905 -5541673 + MLT1H1 LTR MaLR 70 311 -284 * 486 92 13 0 chr3 221982904 221982980 -5541598 + MLT1H1 LTR MaLR 477 553 -2 650 216 0 7 chr3 221983759 221983898 -5540680 + MER20 DNA MER1_type 82 219 0 2775 31 0 0 chr3 221984028 221984346 -5540232 - AluYb8 SINE Alu 0 318 1 879 237 14 5 chr3 221984427 221984642 -5539936 - LTR67 LTR ERVL -3 554 338 205 343 33 67 chr3 221985028 221985238 -5539340 + L2 LINE L2 2828 3030 -242 2060 130 7 0 chr3 221985788 221986073 -5538505 + AluSx SINE Alu 1 287 -25 198 164 0 0 chr3 221986079 221986134 -5538444 + (TCTA)n Simple_repeat Simple_repeat 4 58 0 1373 174 10 50 chr3 221986266 221986488 -5538090 + MLT2B3 LTR ERVL 1 209 -345 216 86 0 0 chr3 221986488 221986523 -5538055 + (TCTG)n Simple_repeat Simple_repeat 2 36 0 1373 174 10 50 chr3 221986523 221986599 -5537979 + MLT2B3 LTR ERVL 209 287 -267 403 262 48 16 chr3 221987361 221987487 -5537091 + MLT1J2 LTR MaLR 73 202 -248 258 258 48 0 chr3 221987592 221987654 -5536924 - MIR SINE MIR -15 247 183 299 181 121 0 chr3 221988682 221988765 -5535813 + MER63 DNA MER1_type 1 93 -837 258 241 0 0 chr3 221988794 221988852 -5535726 - MER63 DNA MER1_type -539 522 465 * 2084 189 25 19 chr3 221988836 221989312 -5535266 + MER63C DNA MER1_type 255 733 -197 301 288 8 34 chr3 221989867 221989914 -5534664 - L1MC4 LINE L1 -1339 6703 6656 2142 117 13 0 chr3 221989914 221990221 -5534357 - AluSq SINE Alu -2 311 1 301 288 8 34 chr3 221990221 221990291 -5534287 - L1MC4 LINE L1 -1386 6656 6589 579 104 84 0 chr3 221990291 221990598 -5533980 + (TA)n Simple_repeat Simple_repeat 1 332 0 607 104 67 0 chr3 221990610 221990774 -5533804 + (TA)n Simple_repeat Simple_repeat 2 176 0 2233 101 20 0 chr3 221990899 221991205 -5533373 + AluSx SINE Alu 1 312 0 738 206 85 34 chr3 221991816 221992246 -5532332 + MLT1D LTR MaLR 2 504 -1 319 246 39 39 chr3 221992409 221992539 -5532039 - L1MC5 LINE L1 -50 7911 7782 328 289 26 39 chr3 221992563 221992719 -5531859 - L1ME2 LINE L1 -10 6154 6001 2392 235 69 42 chr3 221992729 221992771 -5531807 - L1ME2 LINE L1 -217 5947 5908 1303 80 36 112 chr3 221992771 221992884 -5531694 - MER30 DNA MER1_type 0 230 145 2012 145 0 7 chr3 221992884 221993211 -5531367 + AluSq SINE Alu 1 313 0 1303 80 36 112 chr3 221993211 221993346 -5531232 - MER30 DNA MER1_type -85 145 1 2392 235 69 42 chr3 221993346 221993831 -5530747 - L1ME2 LINE L1 -256 5908 5438 375 78 0 0 chr3 221993831 221993882 -5530696 + (CA)n Simple_repeat Simple_repeat 2 52 0 2392 235 69 42 chr3 221993882 221994869 -5529709 - L1ME2 LINE L1 -726 5438 4363 1665 186 89 27 chr3 221994876 221995323 -5529255 - MLT1D LTR MaLR -2 503 29 298 281 59 15 chr3 221995335 221995470 -5529108 - L1ME2 LINE L1 -1800 4346 4206 1580 178 7 34 chr3 221995603 221995901 -5528677 + AluJo SINE Alu 13 302 -10 203 310 35 11 chr3 221995987 221996074 -5528504 + L2 LINE L2 2214 2302 -1012 186 333 12 37 chr3 221996525 221996606 -5527972 + L2 LINE L2 3132 3210 -62 2130 117 3 3 chr3 221996606 221996912 -5527666 + AluSx SINE Alu 1 306 0 200 214 18 0 chr3 221996919 221996975 -5527603 + (TATATG)n Simple_repeat Simple_repeat 4 60 0 227 273 0 0 chr3 221997555 221997610 -5526968 - Charlie8 DNA MER1_type -1001 1416 1362 249 284 107 97 chr3 221997717 221997793 -5526785 - Charlie8 DNA MER1_type -1967 450 376 1866 208 96 101 chr3 221997793 221998524 -5526054 - LTR8A LTR ERV1 0 727 1 249 284 107 97 chr3 221998524 221998809 -5525769 - Charlie8 DNA MER1_type -2041 376 82 1921 99 107 0 chr3 221998809 221999081 -5525497 - AluSg SINE Alu -9 301 1 249 284 107 97 chr3 221999081 221999119 -5525459 - Charlie8 DNA MER1_type -2335 82 46 453 280 95 21 chr3 221999197 221999440 -5525138 - L1MC4a LINE L1 -1925 5883 5623 288 315 161 20 chr3 222000057 222000349 -5524229 - L2 LINE L2 -1134 2180 1848 2337 86 0 0 chr3 222002135 222002436 -5522142 - AluSx SINE Alu -11 301 1 626 250 52 57 chr3 222003191 222003611 -5520967 - HAL1 LINE L1 -887 1620 1203 23 0 0 0 chr3 222003700 222003723 -5520855 + AT_rich Low_complexity Low_complexity 1 23 0 225 302 0 0 chr3 222003800 222003863 -5520715 - Charlie7 DNA MER1_type -2525 87 25 180 0 0 0 chr3 222003946 222003966 -5520612 + (T)n Simple_repeat Simple_repeat 1 20 0 844 57 8 8 chr3 222004043 222004167 -5520411 + (TTTTC)n Simple_repeat Simple_repeat 3 126 0 661 205 0 0 chr3 222004170 222004282 -5520296 - FLAM_C SINE Alu -30 113 2 23 0 0 0 chr3 222004288 222004311 -5520267 + AT_rich Low_complexity Low_complexity 1 23 0 506 298 12 6 chr3 222004441 222004609 -5519969 + MER57-int LTR ERV1 6842 7010 -527 453 152 18 80 chr3 222004690 222004802 -5519776 + MER57-int LTR ERV1 7431 7535 -2 994 281 260 22 chr3 222004814 222005152 -5519426 - L2 LINE L2 -1067 2247 1991 2445 82 0 0 chr3 222005152 222005457 -5519121 + AluSx SINE Alu 1 305 -7 994 281 260 22 chr3 222005457 222005547 -5519031 - L2 LINE L2 -1323 1991 1924 1587 190 31 14 chr3 222005547 222005837 -5518741 + AluJo SINE Alu 1 295 -17 994 281 260 22 chr3 222005837 222006429 -5518149 - L2 LINE L2 -1390 1924 983 323 275 33 25 chr3 222006495 222006615 -5517963 - MIR SINE MIR -65 143 31 231 213 0 0 chr3 222007125 222007200 -5517378 + T-rich Low_complexity Low_complexity 1 75 0 2795 122 9 18 chr3 222007471 222007907 -5516671 - MER57B LTR ERV1 -2 432 1 483 134 18 80 chr3 222007908 222008020 -5516558 - MER57B-int LTR ERV1 -2 7535 7431 552 304 22 17 chr3 222008060 222008306 -5516272 - MER57B-int LTR ERV1 -536 7001 6806 1779 272 23 52 chr3 222009819 222011182 -5513396 - MER57B-int LTR ERV1 -1361 6176 2017 409 308 90 65 chr3 222011272 222011914 -5512664 - MER57B-int LTR ERV1 -2919 3882 3225 265 252 36 36 chr3 222011975 222012086 -5512492 - MER57B-int LTR ERV1 -4041 4937 4827 262 279 70 35 chr3 222012143 222012315 -5512263 - MER57B-int LTR ERV1 -3803 2998 2821 2479 87 3 0 chr3 222012322 222012634 -5511944 + AluSp SINE Alu 1 313 0 632 289 59 49 chr3 222012734 222013223 -5511355 - MER57B-int LTR ERV1 -4100 2701 158 32 0 0 0 chr3 222013961 222013993 -5510585 + AT_rich Low_complexity Low_complexity 1 32 0 8568 35 7 0 chr3 222014014 222015832 -5508746 - L1PA5 LINE L1 -4 6150 4326 22725 55 55 0 chr3 222015832 222018926 -5505652 - L1PA5 LINE L1 -2881 3265 3 2332 105 0 3 chr3 222019060 222019365 -5505213 + AluSc SINE Alu 1 304 -5 198 0 0 0 chr3 222020012 222020034 -5504544 + (T)n Simple_repeat Simple_repeat 1 22 0 636 267 15 9 chr3 222020524 222020798 -5503780 - MER57B-int LTR ERV1 -7228 309 3 424 143 11 66 chr3 222020802 222020893 -5503685 - MER57B LTR ERV1 0 434 349 * 1299 132 20 0 chr3 222020892 222021096 -5503482 - MER57B LTR ERV1 -226 208 1 200 59 29 0 chr3 222021302 222021336 -5503242 + (TTTG)n Simple_repeat Simple_repeat 2 36 0 2228 110 0 0 chr3 222021339 222021621 -5502957 - AluSx SINE Alu -30 282 1 886 257 46 0 chr3 222022128 222022346 -5502232 + MIR SINE MIR 34 261 -1 181 243 0 0 chr3 222022591 222022628 -5501950 + L2 LINE L2 1580 1616 -1698 208 359 0 13 chr3 222022978 222023056 -5501522 + MIR3 SINE MIR 6 82 -126 251 293 0 0 chr3 222023082 222023157 -5501421 - MIR3 SINE MIR -119 89 15 1562 206 29 0 chr3 222023775 222024051 -5500527 - AluJo SINE Alu -28 284 1 306 340 35 46 chr3 222024129 222024326 -5500252 - L1ME4a LINE L1 -202 5919 5725 721 200 179 20 chr3 222024686 222024881 -5499697 + MIR SINE MIR 6 231 -31 24 0 0 0 chr3 222025108 222025132 -5499446 + AT_rich Low_complexity Low_complexity 1 24 0 21 0 0 0 chr3 222025738 222025759 -5498819 + AT_rich Low_complexity Low_complexity 1 21 0 2406 70 0 25 chr3 222025940 222026255 -5498323 + AluY SINE Alu 1 307 -4 376 250 50 29 chr3 222026954 222027094 -5497484 + MER103 DNA DNA 23 165 -1 21 0 0 0 chr3 222029912 222029933 -5494645 + AT_rich Low_complexity Low_complexity 1 21 0 2288 89 0 0 chr3 222029967 222030260 -5494318 - AluSc SINE Alu -6 303 11 183 447 35 7 chr3 222030289 222030430 -5494148 + L2 LINE L2 2942 3086 -186 1248 171 95 12 chr3 222030817 222031069 -5493509 - MLT1A1 LTR MaLR -92 273 1 28 86 0 0 chr3 222031361 222031431 -5493147 + AT_rich Low_complexity Low_complexity 1 70 0 802 99 0 0 chr3 222031932 222032043 -5492535 + HY1 scRNA scRNA 1 111 -1 24 0 0 0 chr3 222032594 222032618 -5491960 + AT_rich Low_complexity Low_complexity 1 24 0 2323 89 3 0 chr3 222036651 222036953 -5487625 - AluSp SINE Alu -10 303 1 2240 23 0 0 chr3 222037150 222037407 -5487171 - AluY SINE Alu -54 257 1 420 241 127 31 chr3 222037410 222037701 -5486877 - L1ME4a LINE L1 -3 6118 5800 234 0 0 0 chr3 222037821 222037847 -5486731 + (T)n Simple_repeat Simple_repeat 1 26 0 1826 95 0 8 chr3 222038421 222038664 -5485914 + AluSg SINE Alu 53 293 -17 1861 61 148 8 chr3 222039405 222039669 -5484909 + AluY SINE Alu 1 301 -10 21 36 0 0 chr3 222040774 222040802 -5483776 + AT_rich Low_complexity Low_complexity 1 28 0 31 44 0 0 chr3 222040826 222040871 -5483707 + AT_rich Low_complexity Low_complexity 1 45 0 2449 61 0 0 chr3 222042188 222042483 -5482095 + AluY SINE Alu 1 295 -16 1613 158 50 13 chr3 222042575 222042873 -5481705 + AluJb SINE Alu 1 309 -3 347 164 16 0 chr3 222042917 222042978 -5481600 - MER46A DNA MER2_type 0 236 175 228 196 22 0 chr3 222042959 222043005 -5481573 + MER46A DNA MER2_type 105 151 -85 * 268 250 62 38 chr3 222043078 222043158 -5481420 + MER5B DNA MER1_type 97 178 0 700 187 27 27 chr3 222043165 222043315 -5481263 + MER5A DNA MER1_type 40 189 0 847 131 102 6 chr3 222043568 222043744 -5480834 - MER33 DNA MER1_type 0 324 132 595 174 0 10 chr3 222043732 222043830 -5480748 - MER33 DNA MER1_type -227 97 1 * 1887 79 32 0 chr3 222044637 222044889 -5479689 - AluSc SINE Alu -49 260 1 287 328 141 16 chr3 222044972 222045164 -5479414 + MIR SINE MIR 47 262 0 209 339 58 50 chr3 222046742 222046863 -5477715 - L2 LINE L2 -1 3271 3150 22 35 0 0 chr3 222047345 222047374 -5477204 + AT_rich Low_complexity Low_complexity 1 29 0 209 250 0 18 chr3 222047531 222047587 -5476991 + (TA)n Simple_repeat Simple_repeat 2 56 0 24 53 0 0 chr3 222047651 222047689 -5476889 + AT_rich Low_complexity Low_complexity 1 38 0 266 101 72 0 chr3 222048395 222048464 -5476114 - L2 LINE L2 -411 2903 2830 676 295 163 3 chr3 222048500 222048641 -5475937 - L2 LINE L2 -1465 1849 1732 3204 136 14 2 chr3 222048641 222049148 -5475430 - MER75 DNA T2_type 0 514 2 676 295 163 3 chr3 222049148 222049331 -5475247 - L2 LINE L2 -1582 1732 1473 2438 252 108 59 chr3 222049332 222050659 -5473919 - L2 LINE L2 -2 3311 1904 701 315 56 36 chr3 222050667 222051026 -5473552 - L2 LINE L2 -1869 1445 1080 256 232 0 0 chr3 222051169 222051225 -5473353 - L1ME LINE L1 -375 5795 5740 2200 112 0 3 chr3 222052010 222052323 -5472255 + AluSx SINE Alu 1 312 0 281 297 174 14 chr3 222052330 222052549 -5472029 + L2 LINE L2 3019 3272 0 1475 194 185 50 chr3 222054385 222054807 -5469771 - MER68 LTR ERV1 -78 484 6 224 163 93 0 chr3 222055335 222055378 -5469200 - MIR SINE MIR 0 262 216 341 313 0 12 chr3 222055413 222055496 -5469082 - MIR SINE MIR -150 112 31 304 221 15 0 chr3 222056554 222056622 -5467956 - MER3 DNA MER1_type 0 209 141 1839 136 3 39 chr3 222056661 222056969 -5467609 + AluSx SINE Alu 6 302 -10 704 170 105 13 chr3 222056976 222057129 -5467449 - MER3 DNA MER1_type -42 167 1 357 296 19 80 chr3 222057844 222058006 -5466572 - MIR SINE MIR -104 158 7 27 29 0 0 chr3 222058472 222058506 -5466072 + AT_rich Low_complexity Low_complexity 1 34 0 327 336 113 36 chr3 222061161 222061604 -5462974 - L2 LINE L2 -345 2969 2493 353 307 125 48 chr3 222061638 222062055 -5462523 + L1ME4a LINE L1 5621 6069 -52 22 70 0 0 chr3 222062075 222062118 -5462460 + AT_rich Low_complexity Low_complexity 1 43 0 1965 148 0 3 chr3 222062275 222062578 -5462000 + AluSx SINE Alu 3 304 -8 2556 209 117 24 chr3 222063954 222064386 -5460192 + L1ME2 LINE L1 5370 5761 -573 1870 154 0 13 chr3 222064386 222064684 -5459894 + AluJo SINE Alu 2 295 -17 2556 209 117 24 chr3 222064684 222064987 -5459591 + L1ME2 LINE L1 5761 6334 0 216 0 0 0 chr3 222065656 222065680 -5458898 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 875 229 24 29 chr3 222065714 222065919 -5458659 + MIR SINE MIR 58 261 -1 198 284 57 68 chr3 222066435 222066523 -5458055 + MIR SINE MIR 20 106 -102 618 305 99 11 chr3 222066814 222067086 -5457492 - MER102b DNA MER1_type -44 297 2 346 278 11 0 chr3 222067802 222067892 -5456686 - MIR SINE MIR -6 256 166 2362 84 3 3 chr3 222068135 222068444 -5456134 + AluSp SINE Alu 1 309 -4 1285 178 0 13 chr3 222070035 222070266 -5454312 + AluJo SINE Alu 1 228 -84 21 0 0 0 chr3 222073949 222073970 -5450608 + AT_rich Low_complexity Low_complexity 1 21 0 357 300 53 47 chr3 222074347 222074497 -5450081 + MIR3 SINE MIR 2 152 -56 226 305 61 0 chr3 222074682 222074764 -5449814 + MIR SINE MIR 77 163 -99 24 32 0 0 chr3 222075416 222075447 -5449131 + AT_rich Low_complexity Low_complexity 1 31 0 1829 171 0 16 chr3 222076675 222076980 -5447598 + AluJo SINE Alu 1 300 -12 2321 96 0 3 chr3 222077558 222077861 -5446717 + AluY SINE Alu 1 302 -9 336 233 78 20 chr3 222077875 222078077 -5446501 - L1MC4 LINE L1 -140 7902 7665 995 277 57 23 chr3 222078086 222078436 -5446142 - L1MC4 LINE L1 -1223 6819 6458 21 0 0 0 chr3 222079067 222079088 -5445490 + AT_rich Low_complexity Low_complexity 1 21 0 356 259 101 25 chr3 222079584 222079720 -5444858 + MIR SINE MIR 42 186 -64 2025 83 69 0 chr3 222080558 222080835 -5443743 - AluY SINE Alu -15 296 1 1720 232 259 22 chr3 222081002 222081868 -5442710 + L1MC4 LINE L1 6729 7690 -118 275 89 0 0 chr3 222081873 222081918 -5442660 + L1MC4 LINE L1 7987 8031 -11 2447 90 0 0 chr3 222082755 222083066 -5441512 + AluSx SINE Alu 1 311 -1 394 287 207 0 chr3 222083145 222083319 -5441259 - MIR SINE MIR -6 256 47 222 216 0 20 chr3 222085064 222085115 -5439463 + MER5A DNA MER1_type 112 161 -28 213 39 0 0 chr3 222085493 222085519 -5439059 + (A)n Simple_repeat Simple_repeat 1 26 0 2552 49 3 3 chr3 222086867 222087173 -5437405 + AluY SINE Alu 1 306 -5 714 144 8 0 chr3 222087451 222087569 -5437009 - FRAM SINE Alu 0 176 58 21 0 0 0 chr3 222087707 222087728 -5436850 + AT_rich Low_complexity Low_complexity 1 21 0 1300 94 49 0 chr3 222089198 222089401 -5435177 + L1PA8A LINE L1 5892 6104 -27 198 0 0 0 chr3 222089402 222089424 -5435154 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 208 206 0 0 chr3 222089467 222089501 -5435077 + polypurine Low_complexity Low_complexity 3 36 0 185 341 59 12 chr3 222089657 222089742 -5434836 - MIR SINE MIR -63 145 57 13083 123 50 43 chr3 222091705 222094103 -5430475 + Tigger1 DNA MER2_type 1 2415 -3 2478 79 0 0 chr3 222094614 222094917 -5429661 - AluSx SINE Alu -9 303 1 198 0 0 0 chr3 222095666 222095688 -5428890 + (A)n Simple_repeat Simple_repeat 1 22 0 996 135 0 0 chr3 222096335 222096476 -5428102 - AluSg/x SINE Alu -5 305 165 431 240 0 0 chr3 222098332 222098436 -5426142 - AluSc SINE Alu 0 309 206 1674 171 0 26 chr3 222098914 222099219 -5425359 - AluJb SINE Alu -15 297 1 703 167 0 0 chr3 222099663 222099771 -5424807 - FLAM_A SINE Alu -34 108 1 1593 166 24 30 chr3 222101158 222101453 -5423125 - AluJb SINE Alu -19 293 1 733 75 0 0 chr3 222101579 222101673 -5422905 + AluSc SINE Alu 205 298 -11 2159 101 0 60 chr3 222101821 222102137 -5422441 - AluSx SINE Alu -15 297 1 228 341 11 23 chr3 222102319 222102407 -5422171 + MIR3 SINE MIR 111 197 -11 687 256 56 17 chr3 222102718 222102952 -5421626 + Charlie1a DNA MER1_type 1 243 -1212 3391 206 82 24 chr3 222102983 222103893 -5420685 + Charlie1a DNA MER1_type 368 1341 -1420 2378 98 0 13 chr3 222103893 222104210 -5420368 - AluSq SINE Alu 0 313 1 3391 206 82 24 chr3 222104210 222104289 -5420289 + Charlie1a DNA MER1_type 1341 1414 -41 802 316 193 29 chr3 222104509 222105678 -5418900 + L2 LINE L2 1864 3234 -38 468 311 85 32 chr3 222105890 222106138 -5418440 + MIR SINE MIR 2 262 0 369 115 0 0 chr3 222106225 222106277 -5418301 + Alu SINE Alu 1 52 -250 1621 98 0 0 chr3 222106278 222106492 -5418086 + AluSg/x SINE Alu 92 305 -5 451 260 47 0 chr3 222109578 222109747 -5414831 - L1ME3A LINE L1 -58 6112 5936 354 74 0 0 chr3 222109748 222109802 -5414776 + (TTTC)n Simple_repeat Simple_repeat 4 57 0 1648 192 16 19 chr3 222109805 222110113 -5414465 - AluJo SINE Alu -4 308 2 2089 175 62 20 chr3 222110530 222110936 -5413642 + MSTA LTR MaLR 2 424 -4 5191 153 30 5 chr3 222110940 222111872 -5412706 + MSTA-int LTR MaLR 1 955 -696 21 0 0 0 chr3 222112895 222112916 -5411662 + AT_rich Low_complexity Low_complexity 1 21 0 1208 179 0 5 chr3 222113140 222113341 -5411237 - AluJb SINE Alu -28 284 85 2131 107 3 3 chr3 222113726 222114017 -5410561 + AluSx SINE Alu 1 291 -21 23 0 0 0 chr3 222115994 222116017 -5408561 + AT_rich Low_complexity Low_complexity 1 23 0 2466 55 0 0 chr3 222119132 222119422 -5405156 - AluY SINE Alu -5 306 17 252 292 177 9 chr3 222120907 222121020 -5403558 - MIR SINE MIR -111 151 20 1755 184 3 13 chr3 222121472 222121771 -5402807 - AluJo SINE Alu -16 296 1 422 252 58 39 chr3 222123399 222123554 -5401024 - Charlie8 DNA MER1_type -2259 158 1 301 305 187 11 chr3 222123713 222123900 -5400678 - MIR SINE MIR -12 250 31 2287 146 6 3 chr3 222124139 222124503 -5400075 - MER47A DNA MER2_type -1 365 1 236 250 47 16 chr3 222125897 222125961 -5398617 + MIR SINE MIR 91 156 -106 317 250 60 92 chr3 222127044 222127228 -5397350 - MIR SINE MIR -8 254 77 267 275 25 0 chr3 222127385 222127465 -5397113 + MIR SINE MIR 112 193 -69 602 345 19 14 chr3 222128461 222128670 -5395908 - MIR SINE MIR 0 262 53 2117 238 96 31 chr3 222128723 222129053 -5395525 - L1ME1 LINE L1 0 6166 5859 1898 155 0 23 chr3 222129053 222129363 -5395215 - AluJb SINE Alu -9 303 1 2117 238 96 31 chr3 222129363 222129851 -5394727 - L1ME1 LINE L1 -307 5859 5271 25 31 0 0 chr3 222130389 222130421 -5394157 + AT_rich Low_complexity Low_complexity 1 32 0 1606 149 0 55 chr3 222130434 222130723 -5393855 + AluJo SINE Alu 23 295 -17 2303 183 14 107 chr3 222130806 222131599 -5392979 - L1M LINE L1 -825 5321 4614 191 298 89 24 chr3 222131630 222131754 -5392824 - MIR SINE MIR -57 205 74 196 308 31 31 chr3 222132240 222132305 -5392273 - MIR3 SINE MIR -54 154 90 997 251 54 41 chr3 222132716 222133179 -5391399 + L1MEc LINE L1 1052 1520 -4876 2119 114 0 37 chr3 222133192 222133517 -5391061 + AluSq SINE Alu 1 313 0 1411 119 0 0 chr3 222133530 222133763 -5390815 + AluY SINE Alu 89 321 0 1897 237 39 60 chr3 222133773 222134259 -5390319 + L1MEc LINE L1 1545 2040 -4356 1889 160 0 20 chr3 222134259 222134565 -5390013 + AluJo SINE Alu 1 300 -12 2168 87 0 7 chr3 222134565 222134840 -5389738 + AluSp SINE Alu 1 273 -40 1897 237 39 60 chr3 222134840 222135116 -5389462 + L1MEc LINE L1 2038 2292 -4104 472 227 0 17 chr3 222135120 222135239 -5389339 + L1MC4 LINE L1 7926 8042 0 295 255 165 23 chr3 222135363 222135507 -5389071 + MIR SINE MIR 26 186 -49 3693 158 45 0 chr3 222136047 222136650 -5387928 - L1MC1 LINE L1 -2 6331 5702 672 148 396 0 chr3 222136650 222136819 -5387759 - MER46A DNA MER2_type 0 236 1 2498 132 44 19 chr3 222136819 222137182 -5387396 - L1MC1 LINE L1 -630 5703 5324 2151 115 0 13 chr3 222137182 222137506 -5387072 - AluSx SINE Alu 0 312 1 2498 132 44 19 chr3 222137506 222137620 -5386958 - L1MC1 LINE L1 -1009 5324 5214 407 255 0 10 chr3 222137620 222137722 -5386856 + L2 LINE L2 2687 2787 -527 285 264 146 27 chr3 222137850 222137960 -5386618 - MIR SINE MIR -11 251 129 213 343 14 0 chr3 222139068 222139138 -5385440 + MIR3 SINE MIR 87 157 -51 2362 163 58 15 chr3 222139361 222139771 -5384807 - MSTA LTR MaLR 0 428 1 2358 108 3 40 chr3 222139771 222140141 -5384437 - MSTA-int LTR MaLR 0 1651 1296 533 301 100 8 chr3 222140579 222140818 -5383760 + MIR SINE MIR 2 262 0 2927 182 44 73 chr3 222140862 222140883 -5383695 + L1MC3 LINE L1 6979 6999 -786 2251 117 0 3 chr3 222140883 222141183 -5383395 + AluSx SINE Alu 1 299 -13 2927 182 44 73 chr3 222141183 222141886 -5382692 + L1MC3 LINE L1 6999 7682 -103 1180 179 24 40 chr3 222141890 222142141 -5382437 + AluJb SINE Alu 42 288 -24 634 101 0 55 chr3 222142141 222142250 -5382328 + L1MC3 LINE L1 7683 7785 0 1104 138 5 58 chr3 222142731 222142919 -5381659 + AluJb SINE Alu 1 178 -134 336 154 0 15 chr3 222142952 222143017 -5381561 + Alu SINE Alu 179 242 -59 519 60 0 0 chr3 222143148 222143215 -5381363 + (TA)n Simple_repeat Simple_repeat 1 67 0 22 0 0 0 chr3 222143660 222143682 -5380896 + AT_rich Low_complexity Low_complexity 1 22 0 208 274 0 0 chr3 222143902 222143953 -5380625 + (TA)n Simple_repeat Simple_repeat 1 51 0 248 277 53 11 chr3 222144213 222144307 -5380271 + L2 LINE L2 1968 2065 -1249 1960 147 17 0 chr3 222144324 222144623 -5379955 + AluSx SINE Alu 1 304 -8 534 237 121 16 chr3 222144803 222144997 -5379581 + MLT1H1 LTR MaLR 70 280 -309 525 92 13 0 chr3 222145016 222145092 -5379486 + MLT1H1 LTR MaLR 477 553 -2 702 216 0 7 chr3 222145871 222146010 -5378568 + MER20 DNA MER1_type 82 219 0 2457 94 0 0 chr3 222146140 222146458 -5378120 - AluYb8 SINE Alu 0 318 1 1975 234 257 21 chr3 222146626 222147492 -5377086 + L1MC4 LINE L1 6729 7690 -118 300 124 0 0 chr3 222147497 222147556 -5377022 + L1MC4 LINE L1 7927 8031 -10 2455 90 0 0 chr3 222148379 222148690 -5375888 + AluSx SINE Alu 1 311 -1 385 282 207 0 chr3 222148769 222148943 -5375635 - MIR SINE MIR -6 256 47 224 216 0 20 chr3 222150688 222150739 -5373839 + MER5A DNA MER1_type 112 161 -28 204 40 0 0 chr3 222151117 222151142 -5373436 + (A)n Simple_repeat Simple_repeat 1 25 0 2574 49 3 3 chr3 222152491 222152797 -5371781 + AluY SINE Alu 1 306 -5 769 144 8 0 chr3 222153075 222153193 -5371385 - FRAM SINE Alu 0 176 58 21 0 0 0 chr3 222153331 222153352 -5371226 + AT_rich Low_complexity Low_complexity 1 21 0 1395 94 49 0 chr3 222154822 222155025 -5369553 + L1PA8A LINE L1 5892 6104 -27 198 0 0 0 chr3 222155026 222155048 -5369530 + (TTTTTG)n Simple_repeat Simple_repeat 2 23 0 208 206 0 0 chr3 222155091 222155125 -5369453 + polypurine Low_complexity Low_complexity 3 36 0 501 105 13 0 chr3 222157200 222157276 -5367302 - MLT1H1 LTR MaLR -2 553 477 507 225 120 22 chr3 222157295 222157490 -5367088 - MLT1H1 LTR MaLR -309 246 70 2198 116 7 0 chr3 222157670 222157972 -5366606 - AluSx SINE Alu -8 304 1 511 295 186 15 chr3 222157974 222158313 -5366265 + L2 LINE L2 1851 2247 -1067 507 152 18 80 chr3 222158325 222158437 -5366141 - MER57-int LTR ERV1 -2 7535 7431 572 304 15 9 chr3 222158475 222158688 -5365890 - MER57-int LTR ERV1 -527 7010 6842 23 0 0 0 chr3 222158816 222158839 -5365739 + AT_rich Low_complexity Low_complexity 1 23 0 680 202 0 0 chr3 222158845 222158954 -5365624 + FLAM_C SINE Alu 2 110 -33 844 57 8 8 chr3 222158961 222159085 -5365493 + (GAAAA)n Simple_repeat Simple_repeat 3 126 0 180 0 0 0 chr3 222159162 222159182 -5365396 + (A)n Simple_repeat Simple_repeat 1 20 0 249 302 0 0 chr3 222159267 222159330 -5365248 + Charlie7 DNA MER1_type 25 87 -2525 23 0 0 0 chr3 222159407 222159430 -5365148 + AT_rich Low_complexity Low_complexity 1 23 0 28 48 0 0 chr3 222160182 222160224 -5364354 + AT_rich Low_complexity Low_complexity 1 42 0 214 174 0 43 chr3 222160522 222160591 -5363987 + C-rich Low_complexity Low_complexity 2 67 0 2011 136 0 13 chr3 222161883 222162193 -5362385 + AluSc SINE Alu 1 306 -3 249 331 19 32 chr3 222162200 222162354 -5362224 + MIR SINE MIR 51 202 -60 14889 77 84 8 chr3 222163162 222165296 -5359282 - L1P LINE L1 -3707 2439 143 917 233 23 14 chr3 222165774 222165989 -5358589 + LTR67 LTR ERVL 338 554 -3 2655 46 0 0 chr3 222166070 222166375 -5358203 + AluY SINE Alu 1 305 -6 198 0 0 0 chr3 222167020 222167042 -5357536 + (T)n Simple_repeat Simple_repeat 1 22 0 1913 94 72 0 chr3 222167627 222167903 -5356675 - AluY SINE Alu -15 296 1 281 202 106 19 chr3 222168071 222168175 -5356403 + L1MD3 LINE L1 6779 6926 -1116 1182 256 32 11 chr3 222168479 222168764 -5355814 - AluJb SINE Alu -11 291 1 180 0 0 0 chr3 222168853 222168873 -5355705 + (TC)n Simple_repeat Simple_repeat 1 20 0 21 36 0 0 chr3 222168878 222168906 -5355672 + AT_rich Low_complexity Low_complexity 1 28 0 675 276 72 49 chr3 222168937 222169365 -5355213 - L1ME LINE L1 -328 5793 5356 236 333 40 0 chr3 222170173 222170248 -5354330 - MIR SINE MIR -165 97 20 269 191 202 21 chr3 222170253 222170347 -5354231 - L1MA10 LINE L1 -13 6321 6211 425 281 30 30 chr3 222170381 222170545 -5354033 - L3 LINE CR1 -238 1339 1176 23 92 0 0 chr3 222170709 222170774 -5353804 + GC_rich Low_complexity Low_complexity 1 65 0 326 279 0 0 chr3 222171059 222171138 -5353440 + C-rich Low_complexity Low_complexity 1 79 0 2466 55 0 0 chr3 222223973 222224263 -5300315 - AluY SINE Alu -5 306 17 252 292 177 9 chr3 222225748 222225861 -5298717 - MIR SINE MIR -111 151 20 1755 184 3 13 chr3 222226313 222226612 -5297966 - AluJo SINE Alu -16 296 1 422 252 58 39 chr3 222228240 222228395 -5296183 - Charlie8 DNA MER1_type -2259 158 1 301 305 187 11 chr3 222228554 222228741 -5295837 - MIR SINE MIR -12 250 31 2287 146 6 3 chr3 222228980 222229344 -5295234 - MER47A DNA MER2_type -1 365 1 2149 102 0 60 chr3 222230113 222230428 -5294150 - AluSx SINE Alu -16 296 1 227 341 11 23 chr3 222230610 222230698 -5293880 + MIR3 SINE MIR 111 197 -11 702 270 52 9 chr3 222231009 222231242 -5293336 + Charlie1a DNA MER1_type 1 243 -1212 3799 207 82 23 chr3 222231273 222232182 -5292396 + Charlie1a DNA MER1_type 368 1341 -1420 2374 101 0 13 chr3 222232182 222232499 -5292079 - AluSq SINE Alu 0 313 1 3799 207 82 23 chr3 222232499 222232578 -5292000 + Charlie1a DNA MER1_type 1341 1414 -41 621 318 186 29 chr3 222232798 222233967 -5290611 + L2 LINE L2 1864 3234 -38 397 300 90 34 chr3 222234194 222234427 -5290151 + MIR SINE MIR 17 262 0 394 115 0 0 chr3 222234514 222234566 -5290012 + Alu SINE Alu 1 52 -247 1629 98 0 0 chr3 222234567 222234781 -5289797 + AluSg/x SINE Alu 92 305 -5 498 204 55 72 chr3 222237867 222238024 -5286554 - L1ME3A LINE L1 -58 6112 5954 519 66 0 0 chr3 222238024 222238100 -5286478 + (CTTG)n Simple_repeat Simple_repeat 2 77 0 1618 192 16 19 chr3 222238106 222238414 -5286164 - AluJo SINE Alu -4 308 2 498 204 55 72 chr3 222238414 222238430 -5286148 - L1ME3A LINE L1 -221 5949 5935 2127 175 62 20 chr3 222238831 222239237 -5285341 + MSTA LTR MaLR 2 424 -4 9737 148 20 25 chr3 222239241 222240899 -5283679 + MSTA-int LTR MaLR 1 1651 0 2369 163 58 15 chr3 222240899 222241309 -5283269 + MSTA LTR MaLR 1 428 0 195 343 14 0 chr3 222241532 222241602 -5282976 - MIR3 SINE MIR -51 157 87 262 222 0 0 chr3 222242772 222242817 -5281761 + L2 LINE L2 3211 3255 -17 378 255 0 10 chr3 222242945 222243047 -5281531 - L2 LINE L2 -527 2787 2687 2475 132 42 25 chr3 222243047 222243161 -5281417 + L1MC1 LINE L1 5214 5325 -1008 2180 120 0 16 chr3 222243161 222243478 -5281100 + AluSx SINE Alu 1 312 0 2475 132 42 25 chr3 222243478 222243844 -5280734 + L1MC1 LINE L1 5325 5703 -630 645 150 401 0 chr3 222243844 222244011 -5280567 + MER46A DNA MER2_type 1 234 -2 3481 162 45 0 chr3 222244011 222244616 -5279962 + L1MC1 LINE L1 5700 6331 -2 272 259 95 18 chr3 222245156 222245300 -5279278 - MIR SINE MIR -49 159 26 422 229 8 17 chr3 222245425 222245543 -5279035 - L1MC4 LINE L1 0 8042 7926 1902 235 40 63 chr3 222245547 222245824 -5278754 - L1MEc LINE L1 -4104 2292 2010 2204 84 0 7 chr3 222245824 222246099 -5278479 - AluSp SINE Alu -40 273 1 1883 157 3 20 chr3 222246099 222246404 -5278174 - AluJo SINE Alu -12 300 1 1902 235 40 63 chr3 222246404 222246890 -5277688 - L1MEc LINE L1 -4384 2012 1545 1417 119 0 0 chr3 222246900 222247133 -5277445 - AluY SINE Alu 0 321 89 2160 111 0 37 chr3 222247146 222247471 -5277107 - AluSq SINE Alu 0 313 1 896 257 54 41 chr3 222247484 222247947 -5276631 - L1MEc LINE L1 -4876 1520 1052 2251 186 12 107 chr3 222249064 222249859 -5274719 + L1ME1 LINE L1 4614 5326 -825 1620 149 0 55 chr3 222249942 222250231 -5274347 - AluJo SINE Alu -17 295 23 25 31 0 0 chr3 222250244 222250276 -5274302 + AT_rich Low_complexity Low_complexity 1 32 0 2372 247 87 28 chr3 222250820 222251303 -5273275 + L1ME1 LINE L1 5283 5857 -309 1927 155 0 22 chr3 222251303 222251619 -5272959 + AluJb SINE Alu 1 309 -3 2372 247 87 28 chr3 222251619 222251949 -5272629 + L1ME1 LINE L1 5857 6166 0 530 345 19 14 chr3 222252002 222252211 -5272367 + MIR SINE MIR 53 262 0 240 275 25 0 chr3 222253207 222253287 -5271291 - MIR SINE MIR -69 193 112 256 250 60 92 chr3 222253444 222253628 -5270950 + MIR SINE MIR 77 254 -8 222 214 54 18 chr3 222254711 222254767 -5269811 - MIR SINE MIR -106 156 99 24 67 0 0 chr3 222255555 222255600 -5268978 + AT_rich Low_complexity Low_complexity 1 45 0 245 98 24 0 chr3 222256070 222256111 -5268467 + (TTTTC)n Simple_repeat Simple_repeat 2 43 0 481 220 24 29 chr3 222258167 222258349 -5266229 + MIR SINE MIR 16 197 -62 371 272 96 0 chr3 222259187 222259323 -5265255 + L3 LINE CR1 1371 1519 -58 840 298 8 8 chr3 222259344 222259599 -5264979 - MIR SINE MIR -3 259 5 542 295 50 20 chr3 222260430 222260630 -5263948 + MIR SINE MIR 36 241 -21 586 310 18 22 chr3 222260651 222260841 -5263737 - MIR SINE MIR -61 147 3 194 321 112 22 chr3 222261092 222261226 -5263352 + MIR3 SINE MIR 39 184 -24 511 180 8 74 chr3 222261239 222261361 -5263217 - L2 LINE L2 0 3313 3200 277 307 80 15 chr3 222263299 222263436 -5261142 - MIR3 SINE MIR -5 203 58 279 177 0 48 chr3 222263547 222263609 -5260969 - L1M4 LINE L1 -1817 4329 4271 2170 126 10 0 chr3 222263622 222263924 -5260654 - AluSx SINE Alu -7 305 1 22 35 0 0 chr3 222263928 222263957 -5260621 + AT_rich Low_complexity Low_complexity 1 29 0 5400 183 37 10 chr3 222263957 222264134 -5260444 - L1MC2 LINE L1 -20 6307 6136 1981 36 28 16 chr3 222264134 222264380 -5260198 + L1PA4 LINE L1 5904 6155 0 5400 183 37 10 chr3 222264380 222265663 -5258915 - L1MC2 LINE L1 -191 6136 4808 1386 137 124 4 chr3 222265663 222265897 -5258681 - 7SLRNA srpRNA srpRNA -2 318 57 1196 193 56 63 chr3 222265897 222266286 -5258292 - L1MC2 LINE L1 -1307 4822 4321 2386 88 0 16 chr3 222266286 222266604 -5257974 - AluSq SINE Alu 0 313 1 1196 193 56 63 chr3 222266604 222266782 -5257796 - L1MC2 LINE L1 -1808 4321 4143 376 289 23 17 chr3 222267089 222267262 -5257316 - L1MC2 LINE L1 -4656 1654 1481 1085 193 0 0 chr3 222267286 222267457 -5257121 + FAM SINE Alu 1 171 -4 324 0 0 0 chr3 222267457 222267493 -5257085 + (TG)n Simple_repeat Simple_repeat 2 37 0 1175 228 25 115 chr3 222267494 222268061 -5256517 - L1MC2 LINE L1 -5096 1023 508 947 251 113 6 chr3 222268113 222268440 -5256138 - L1MC2 LINE L1 -5747 372 11 937 163 61 25 chr3 222268442 222268638 -5255940 - Charlie7 DNA MER1_type -802 1810 1608 332 194 65 19 chr3 222268851 222268959 -5255619 - Charlie7 DNA MER1_type -2472 140 28 * 478 273 15 15 chr3 222268954 222269086 -5255492 + MER20 DNA MER1_type 84 215 -4 2080 146 0 0 chr3 222270866 222271154 -5253424 - AluSx SINE Alu -24 288 1 350 234 113 8 chr3 222271184 222271227 -5253351 - MIR SINE MIR -34 228 191 2123 147 0 0 chr3 222271227 222271527 -5253051 + AluJo SINE Alu 1 300 -12 350 234 113 8 chr3 222271527 222271607 -5252971 - MIR SINE MIR -71 191 92 304 231 139 46 chr3 222271886 222272059 -5252519 + L1ME LINE L1 5645 5833 -288 798 213 6 18 chr3 222272153 222272322 -5252256 - MER97c DNA MER1_type? -923 167 1 4691 229 116 38 chr3 222272398 222274376 -5250202 - L1M LINE L1 -743 5421 3310 1310 121 52 4 chr3 222274376 222274729 -5249849 - MSTA LTR MaLR 0 428 1 3408 243 73 31 chr3 222274731 222276522 -5248056 - L1MEc LINE L1 -2834 3381 1667 2138 121 0 25 chr3 222276522 222276837 -5247741 - AluY SINE Alu -1 310 4 1904 169 0 22 chr3 222276841 222277155 -5247423 - AluJb SINE Alu -5 307 1 3408 243 73 31 chr3 222277155 222277663 -5246915 - L1MEc LINE L1 -4550 1665 1015 441 253 11 22 chr3 222278061 222278239 -5246339 - AluSq SINE Alu -133 180 5 744 239 36 59 chr3 222278362 222278484 -5246094 - L1MEc LINE L1 -5386 1010 887 1645 160 6 68 chr3 222278484 222278809 -5245769 - AluJo SINE Alu -7 305 1 744 239 36 59 chr3 222278809 222278992 -5245586 - L1MEc LINE L1 -5509 887 712 1870 273 22 13 chr3 222279017 222279559 -5245019 - L1MEc LINE L1 -5791 605 59 2223 117 50 14 chr3 222279561 222279920 -5244658 + THE1C LTR MaLR 1 372 -3 6405 185 25 70 chr3 222279926 222281356 -5243222 + THE1C-int LTR MaLR 3 1367 -284 2408 274 53 50 chr3 222281353 222282779 -5241799 - L1MEc LINE L1 -4294 2102 673 * 410 326 22 6 chr3 222283249 222283430 -5241148 - L1MEc LINE L1 -6177 219 36 490 273 126 6 chr3 222283966 222284149 -5240429 + L2 LINE L2 3107 3311 -2 937 136 177 89 chr3 222284407 222284617 -5239961 - THE1C LTR MaLR 0 375 99 2118 90 0 33 chr3 222284617 222284916 -5239662 - AluSc SINE Alu -20 289 1 937 136 177 89 chr3 222284916 222285024 -5239554 - THE1C LTR MaLR -276 99 2 1944 100 57 7 chr3 222285273 222285554 -5239024 - AluY SINE Alu -16 295 1 238 364 32 58 chr3 222285589 222285743 -5238835 - MIR3 SINE MIR -34 174 25 354 302 77 30 chr3 222285976 222286145 -5238433 + MIR3 SINE MIR 4 180 -28 2307 28 7 14 chr3 222286940 222287264 -5237314 + AluY SINE Alu 1 322 0 940 268 139 58 chr3 222287952 222288172 -5236406 + L2 LINE L2 1546 1747 -1567 2003 112 3 13 chr3 222288172 222288477 -5236101 - AluSx SINE Alu -10 302 1 940 268 139 58 chr3 222288477 222288854 -5235724 + L2 LINE L2 1747 2191 -1123 22 0 0 0 chr3 222288859 222288881 -5235697 + AT_rich Low_complexity Low_complexity 1 22 0 1044 209 116 45 chr3 222288945 222289373 -5235205 - MLT1D LTR MaLR -8 497 1 1446 272 204 26 chr3 222289373 222290291 -5234287 + L2 LINE L2 2248 3306 -7 217 159 0 45 chr3 222290574 222290618 -5233960 - L2 LINE L2 -223 3049 3008 621 263 66 0 chr3 222292458 222292610 -5231968 + MIR SINE MIR 32 193 -69 305 246 64 45 chr3 222292874 222292984 -5231594 + L2 LINE L2 3160 3271 -1 1088 174 14 14 chr3 222293376 222293583 -5230995 + AluJo SINE Alu 86 292 -20 355 254 138 14 chr3 222294263 222294401 -5230177 + MIR3 SINE MIR 19 173 -35 2047 162 59 52 chr3 222294409 222294558 -5230020 + MSTA LTR MaLR 1 147 -281 2414 59 0 7 chr3 222294558 222294862 -5229716 - AluY SINE Alu -9 302 1 2047 162 59 52 chr3 222294862 222295137 -5229441 + MSTA LTR MaLR 147 428 0 2280 90 0 6 chr3 222295680 222295991 -5228587 - AluSq SINE Alu -4 309 1 271 289 93 70 chr3 222298975 222299192 -5225386 - MIR SINE MIR -28 234 3 234 180 0 0 chr3 222299589 222299650 -5224928 + (TTCA)n Simple_repeat Simple_repeat 4 64 0 290 293 153 38 chr3 222299824 222299981 -5224597 - MIR SINE MIR -70 192 18 378 268 134 0 chr3 222300203 222300315 -5224263 - MER5B DNA MER1_type -1 177 51 677 144 9 0 chr3 222301980 222302091 -5222487 - L1PA15 LINE L1 -17 6148 6037 373 169 15 0 chr3 222302118 222302183 -5222395 - L1PA15 LINE L1 -87 6078 6013 321 304 82 19 chr3 222303687 222303845 -5220733 + MIR3 SINE MIR 33 200 -8 503 255 142 37 chr3 222303980 222304305 -5220273 + L1ME4a LINE L1 5761 6119 -2 25 0 0 0 chr3 222304361 222304386 -5220192 + AT_rich Low_complexity Low_complexity 1 25 0 239 294 158 27 chr3 222304655 222304801 -5219777 - MIR3 SINE MIR -10 198 34 201 331 50 58 chr3 222305444 222305686 -5218892 - L2 LINE L2 -214 3058 2819 270 316 0 13 chr3 222306390 222306466 -5218112 + MIR3 SINE MIR 105 179 -29 491 228 58 42 chr3 222307537 222307726 -5216852 - L1MC5 LINE L1 -54 7907 7716 2022 128 0 0 chr3 222307740 222308038 -5216540 - AluSx SINE Alu -14 298 1 275 329 12 0 chr3 222308818 222308900 -5215678 - L3 LINE CR1 -167 1410 1328 224 294 91 49 chr3 222308975 222309118 -5215460 - MIR SINE MIR -33 229 81 450 258 134 76 chr3 222309595 222309870 -5214708 - L1MC4a LINE L1 -1633 6175 5885 640 176 25 0 chr3 222309878 222309997 -5214581 - FLAM_C SINE Alu -10 133 12 1258 217 30 23 chr3 222310133 222310433 -5214145 + AluJo SINE Alu 1 302 -10 21 0 0 0 chr3 222310950 222310971 -5213607 + AT_rich Low_complexity Low_complexity 1 21 0 2360 76 0 0 chr3 222311567 222311870 -5212708 + AluSc SINE Alu 1 303 -6 1105 189 56 4 chr3 222312191 222312424 -5212154 + AluJo SINE Alu 54 298 -14 2036 108 0 0 chr3 222312425 222312704 -5211874 + AluSg SINE Alu 22 300 -10 979 142 0 16 chr3 222312704 222312887 -5211691 + (GGAA)n Simple_repeat Simple_repeat 1 180 0 387 238 127 0 chr3 222313564 222313690 -5210888 + MLT1J LTR MaLR 1 142 -369 205 233 0 0 chr3 222313984 222314027 -5210551 + L3 LINE CR1 1420 1462 -115 477 356 11 5 chr3 222314588 222314776 -5209802 - MIR3 SINE MIR -11 197 9 218 304 81 61 chr3 222315720 222315868 -5208710 - MIR3 SINE MIR -36 172 22 388 286 83 108 chr3 222316280 222316689 -5207889 - L2 LINE L2 0 3272 2874 454 348 51 0 chr3 222317059 222317217 -5207361 - L3 LINE CR1 -1 1576 1411 253 351 83 19 chr3 222317452 222317636 -5206942 - MIR SINE MIR -54 208 17 192 40 0 0 chr3 222317745 222317770 -5206808 + (TG)n Simple_repeat Simple_repeat 1 25 0 211 129 0 0 chr3 222318165 222318196 -5206382 + MIR SINE MIR 118 148 -114 2155 81 3 3 chr3 222318303 222318587 -5205991 - AluSg SINE Alu -26 284 1 514 300 32 26 chr3 222319086 222319276 -5205302 + MIR SINE MIR 48 238 -24 204 255 0 0 chr3 222319257 222319304 -5205274 - L2 LINE L2 0 3272 3226 * 361 304 45 0 chr3 222320052 222320164 -5204414 - MIR3 SINE MIR -49 159 43 375 301 119 61 chr3 222321626 222321896 -5202682 + L2 LINE L2 2539 2792 -521 2174 96 3 0 chr3 222321896 222322198 -5202380 - AluSx SINE Alu -9 303 1 375 301 119 61 chr3 222322198 222322656 -5201922 + L2 LINE L2 2792 3309 -4 1865 123 4 0 chr3 222322695 222322963 -5201615 + AluSx SINE Alu 29 297 -15 988 178 0 0 chr3 222322963 222323132 -5201446 + AluSg/x SINE Alu 134 302 -10 236 321 62 12 chr3 222323238 222323319 -5201259 + MIR SINE MIR 32 116 -92 685 208 8 0 chr3 222323454 222323579 -5200999 + MER5A DNA MER1_type 1 126 -63 1048 104 92 0 chr3 222323582 222323746 -5200832 + AluSc SINE Alu 120 298 -11 248 133 0 44 chr3 222323747 222323792 -5200786 + MER5A DNA MER1_type 146 188 -1 360 0 0 0 chr3 222324560 222324600 -5199978 + (CA)n Simple_repeat Simple_repeat 2 41 0 1588 266 68 68 chr3 222324758 222325367 -5199211 - L2 LINE L2 0 3313 2705 2239 110 0 0 chr3 222325367 222325676 -5198902 + AluSg SINE Alu 1 309 -1 1588 266 68 68 chr3 222325676 222326066 -5198512 - L2 LINE L2 -608 2705 2316 183 306 102 41 chr3 222326971 222327069 -5197509 + MIR SINE MIR 43 146 -62 2864 247 44 44 chr3 222327091 222327849 -5196729 - L1M4 LINE L1 -2465 3681 2921 2069 129 3 0 chr3 222327849 222328160 -5196418 - AluSx SINE Alu 0 312 1 2864 247 44 44 chr3 222328160 222328532 -5196046 - L1M4 LINE L1 -3224 2922 2551 222 352 22 0 chr3 222328533 222328624 -5195954 + L2 LINE L2 2687 2779 -535 1114 142 90 19 chr3 222328625 222328836 -5195742 + AluJb SINE Alu 85 310 -2 607 294 106 81 chr3 222328842 222329328 -5195250 + L2 LINE L2 2784 3313 0 275 324 143 9 chr3 222329422 222329527 -5195051 + L2 LINE L2 3149 3267 -5 212 328 0 0 chr3 222329614 222329678 -5194900 + L2 LINE L2 3208 3271 -1 2230 104 3 0 chr3 222329688 222329997 -5194581 + AluSg SINE Alu 1 310 0 213 252 134 50 chr3 222330521 222330640 -5193938 + L2 LINE L2 3141 3269 -3 1285 33 0 0 chr3 222331250 222331403 -5193175 + L1PA5 LINE L1 6002 6154 0 240 222 16 143 chr3 222331626 222331752 -5192826 + MER5A DNA MER1_type 1 110 -79 * 252 253 0 76 chr3 222331681 222331760 -5192818 - MER5A DNA MER1_type -31 158 86 199 89 0 178 chr3 222332016 222332061 -5192517 - L2 LINE L2 0 3272 3236 598 168 23 53 chr3 222332309 222332440 -5192138 + L1MD3 LINE L1 7841 7967 -28 214 350 133 33 chr3 222332451 222333082 -5191496 - L2 LINE L2 -683 2631 1938 565 252 131 10 chr3 222333262 222333468 -5191110 + MIR SINE MIR 31 261 -1 2177 202 38 7 chr3 222334200 222334651 -5189927 - MLT1C LTR MaLR 0 467 3 230 358 27 99 chr3 222334666 222335080 -5189498 + L2 LINE L2 2842 3225 -47 225 179 51 128 chr3 222335485 222335563 -5189015 - L3 LINE CR1 -925 652 581 407 294 66 41 chr3 222335665 222335862 -5188716 - MIR3 SINE MIR -4 204 3 2191 87 3 19 chr3 222336160 222336471 -5188107 + AluSx SINE Alu 1 306 -6 245 242 97 0 chr3 222337157 222337219 -5187359 - L2 LINE L2 -90 3182 3115 416 292 46 62 chr3 222338613 222338808 -5185770 + MIR SINE MIR 9 200 -62 558 330 29 0 chr3 222340966 222341139 -5183439 + MER91A DNA MER1_type 8 185 -11 986 233 161 40 chr3 222341139 222341512 -5183066 - MER115 DNA AcHobo -1 692 275 556 340 59 0 chr3 222341614 222341817 -5182761 - MER115 DNA AcHobo -391 302 88 405 279 47 16 chr3 222342138 222342267 -5182311 + MIR SINE MIR 21 153 -55 2215 73 33 0 chr3 222342268 222342596 -5181982 + AluSp SINE Alu 1 338 0 192 333 29 0 chr3 222342596 222342665 -5181913 + MIR3 SINE MIR 138 208 0 590 253 80 19 chr3 222342696 222342858 -5181720 - MER5B DNA MER1_type -6 172 1 708 269 74 8 chr3 222343527 222343769 -5180809 - MIR SINE MIR -3 259 2 1984 82 4 11 chr3 222344212 222344521 -5180057 + AluY SINE Alu 3 309 0 416 285 160 14 chr3 222345042 222345186 -5179392 - MER5A DNA MER1_type -16 173 9 484 247 65 32 chr3 222345579 222345765 -5178813 - L2 LINE L2 -572 2742 2551 2232 224 40 12 chr3 222346009 222346586 -5177992 + L1ME1 LINE L1 4097 4689 -1457 3831 177 55 17 chr3 222346594 222346741 -5177837 - L1MB2 LINE L1 0 6171 6031 1753 118 0 94 chr3 222346741 222347070 -5177508 - AluJb SINE Alu -14 298 1 3831 177 55 17 chr3 222347070 222347289 -5177289 - L1MB2 LINE L1 -140 6031 5822 404 52 35 0 chr3 222347289 222347347 -5177231 + (TATG)n Simple_repeat Simple_repeat 3 62 0 3831 177 55 17 chr3 222347347 222347792 -5176786 - L1MB2 LINE L1 -349 5822 5327 3454 231 66 14 chr3 222347795 222349206 -5175372 + L1ME1 LINE L1 4680 6161 -5 197 331 58 103 chr3 222349311 222349758 -5174820 + L2 LINE L2 2034 2460 -854 1972 103 4 11 chr3 222349783 222350089 -5174489 - AluSg SINE Alu 0 304 1 3003 230 33 48 chr3 222350115 222351013 -5173565 - L1ME2 LINE L1 -2 6162 5279 184 367 121 29 chr3 222351014 222351221 -5173357 + L2 LINE L2 2509 2734 -580 269 276 20 20 chr3 222351369 222351467 -5173111 + L2 LINE L2 2994 3091 -181 842 300 39 46 chr3 222352136 222352573 -5172005 - L3 LINE CR1 -4 1573 1140 255 200 50 60 chr3 222352755 222352855 -5171723 + L2 LINE L2 3174 3272 0 1307 67 124 29 chr3 222355157 222355367 -5169211 - MER30 DNA MER1_type 0 230 1 347 211 14 0 chr3 222355411 222355482 -5169096 + MIR SINE MIR 77 148 -60 324 0 0 0 chr3 222355516 222355552 -5169026 + (TG)n Simple_repeat Simple_repeat 2 37 0 205 205 0 0 chr3 222355552 222355591 -5168987 + (CATATA)n Simple_repeat Simple_repeat 2 40 0 536 245 148 32 chr3 222355779 222355995 -5168583 - MIR SINE MIR -2 260 20 2119 103 27 0 chr3 222356175 222356475 -5168103 - AluSx SINE Alu -2 310 3 217 267 56 56 chr3 222357953 222358043 -5166535 + MIR3 SINE MIR 93 182 -26 244 336 118 17 chr3 222358063 222358182 -5166396 + MIR SINE MIR 22 152 -110 416 308 65 28 chr3 222358233 222358465 -5166113 - MIR SINE MIR -1 261 17 2220 90 0 7 chr3 222358575 222358875 -5165703 + AluSx SINE Alu 1 298 -14 284 296 210 43 chr3 222358956 222359189 -5165389 - L2 LINE L2 -345 2969 2698 1945 117 7 10 chr3 222360952 222361251 -5163327 + AluSg SINE Alu 1 298 -12 221 277 99 28 chr3 222361961 222362102 -5162476 + MIR3 SINE MIR 2 152 -56 285 305 58 25 chr3 222362112 222362246 -5162332 + MER5A DNA MER1_type 5 151 -38 2003 102 0 62 chr3 222362246 222362569 -5162009 + AluSp SINE Alu 1 303 -10 1163 243 35 46 chr3 222362865 222363235 -5161343 - MLT1A2 LTR MaLR -4 370 5 397 231 107 44 chr3 222363410 222363635 -5160943 + LTR67 LTR ERVL 319 557 0 682 293 57 60 chr3 222363636 222363971 -5160607 + L3 LINE CR1 1170 1503 -74 6059 85 36 5 chr3 222363978 222365326 -5159252 + L1PA10 LINE L1 4790 6164 -4 201 74 0 0 chr3 222365449 222365476 -5159102 + (GGGAA)n Simple_repeat Simple_repeat 4 30 0 260 172 133 100 chr3 222365515 222365695 -5158883 - L1ME4a LINE L1 -4 6117 5932 * 3833 171 24 55 chr3 222365678 222366557 -5158021 - L1MB8 LINE L1 -12 6166 5315 734 234 0 0 chr3 222366575 222366716 -5157862 - FRAM SINE Alu -38 138 1 519 147 0 0 chr3 222366730 222366805 -5157773 - AluJ/FLAM SINE Alu -232 80 6 1466 202 6 6 chr3 222366806 222367152 -5157426 - L1MB8 LINE L1 -811 5335 4990 891 225 109 50 chr3 222367152 222367472 -5157106 - MLT1C LTR MaLR -118 349 11 409 292 18 0 chr3 222369148 222369261 -5155317 + MIR SINE MIR 30 144 -64 379 289 31 44 chr3 222369276 222369311 -5155267 - MIR3 SINE MIR -18 190 156 989 237 18 18 chr3 222369311 222369535 -5155043 + MER58A DNA MER1_type 1 224 0 379 289 31 44 chr3 222369535 222369658 -5154920 - MIR3 SINE MIR -52 156 34 701 165 50 8 chr3 222370661 222370782 -5153796 + L2 LINE L2 3187 3312 -1 498 217 174 67 chr3 222371103 222371237 -5153341 - MIR SINE MIR 0 262 144 2766 97 8 0 chr3 222371237 222371609 -5152969 + THE1C LTR MaLR 1 375 0 498 217 174 67 chr3 222371609 222371706 -5152872 - MIR SINE MIR -118 144 3 239 282 100 9 chr3 222371706 222371810 -5152768 + MIR3 SINE MIR 73 186 -22 2018 147 0 3 chr3 222373167 222373480 -5151098 - AluJo SINE Alu 0 312 1 494 311 0 8 chr3 222373603 222373735 -5150843 + MER5B DNA MER1_type 3 133 -45 1388 242 57 83 chr3 222373737 222374053 -5150525 - L1ME3A LINE L1 -5 6165 5842 2000 123 24 0 chr3 222374053 222374345 -5150233 + AluSx SINE Alu 1 299 -13 1388 242 57 83 chr3 222374345 222374417 -5150161 - L1ME3A LINE L1 -328 5842 5770 1541 205 69 17 chr3 222374417 222374763 -5149815 + MLT1A1 LTR MaLR 2 365 0 1388 242 57 83 chr3 222374763 222374848 -5149730 - L1ME3A LINE L1 -400 5770 5684 1566 167 16 41 chr3 222374848 222375166 -5149412 - AluJo SINE Alu -2 310 1 1388 242 57 83 chr3 222375166 222375317 -5149261 - L1ME3A LINE L1 -486 5684 5555 263 127 18 55 chr3 222375321 222375376 -5149202 - MER5B DNA MER1_type -121 57 5 279 316 74 86 chr3 222375534 222375873 -5148705 + L2 LINE L2 2927 3261 -11 2230 104 3 0 chr3 222376847 222377156 -5147422 - AluSg SINE Alu 0 310 1 212 328 0 0 chr3 222377166 222377230 -5147348 - L2 LINE L2 -1 3271 3208 275 324 143 9 chr3 222377317 222377422 -5147156 - L2 LINE L2 -5 3267 3149 588 286 158 69 chr3 222377516 222378002 -5146576 - L2 LINE L2 0 3313 2784 1097 147 90 19 chr3 222378008 222378219 -5146359 - AluJb SINE Alu -2 310 85 214 395 33 28 chr3 222378220 222378435 -5146143 - L2 LINE L2 -535 2779 2564 414 264 16 32 chr3 222379950 222380075 -5144503 + MIR SINE MIR 22 144 -64 379 289 31 44 chr3 222380090 222380125 -5144453 - MIR3 SINE MIR -18 190 156 1021 228 18 18 chr3 222380125 222380349 -5144229 + MER58A DNA MER1_type 1 224 0 379 289 31 44 chr3 222380349 222380472 -5144106 - MIR3 SINE MIR -52 156 34 701 165 50 8 chr3 222381475 222381596 -5142982 + L2 LINE L2 3187 3312 -1 498 217 174 67 chr3 222381908 222382042 -5142536 - MIR SINE MIR 0 262 144 2766 97 8 0 chr3 222382042 222382414 -5142164 + THE1C LTR MaLR 1 375 0 498 217 174 67 chr3 222382414 222382511 -5142067 - MIR SINE MIR -118 144 3 239 282 100 9 chr3 222382511 222382615 -5141963 + MIR3 SINE MIR 73 186 -22 2028 147 0 3 chr3 222383971 222384284 -5140294 - AluJo SINE Alu 0 312 1 494 311 0 8 chr3 222384407 222384539 -5140039 + MER5B DNA MER1_type 3 133 -45 1388 242 57 83 chr3 222384541 222384857 -5139721 - L1ME3A LINE L1 -5 6165 5842 1983 124 24 0 chr3 222384857 222385147 -5139431 + AluSx SINE Alu 1 297 -15 1388 242 57 83 chr3 222385147 222385219 -5139359 - L1ME3A LINE L1 -328 5842 5770 1543 221 55 9 chr3 222385219 222385567 -5139011 + MLT1A1 LTR MaLR 2 365 0 1388 242 57 83 chr3 222385567 222385652 -5138926 - L1ME3A LINE L1 -400 5770 5684 1566 167 16 41 chr3 222385652 222385970 -5138608 - AluJo SINE Alu -2 310 1 1388 242 57 83 chr3 222385970 222386121 -5138457 - L1ME3A LINE L1 -486 5684 5555 263 127 18 55 chr3 222386125 222386180 -5138398 - MER5B DNA MER1_type -121 57 5 327 305 70 88 chr3 222386339 222386680 -5137898 + L2 LINE L2 2927 3261 -11 746 267 76 58 chr3 222386781 222387259 -5137319 - MLT1H1 LTR MaLR -24 518 51 475 299 135 20 chr3 222387697 222388098 -5136480 + L1ME4a LINE L1 5675 6121 0 190 337 0 54 chr3 222388248 222388340 -5136238 + MIR3 SINE MIR 82 168 -40 313 306 69 35 chr3 222388356 222388529 -5136049 - MIR SINE MIR -50 212 34 272 328 128 43 chr3 222388535 222388770 -5135808 - L3 LINE CR1 -179 1398 1144 210 196 59 20 chr3 222388765 222388816 -5135762 - L3b LINE CR1 0 1583 1531 * 371 239 98 14 chr3 222390064 222390208 -5134370 - MIR SINE MIR -57 151 33 1081 211 52 0 chr3 222390937 222391150 -5133428 + MER58A DNA MER1_type 1 224 0 294 276 0 0 chr3 222391321 222391379 -5133199 + L2 LINE L2 3210 3267 -5 733 294 152 43 chr3 222391699 222392121 -5132457 + MLT2F LTR ERVL 3 470 -193 371 239 45 0 chr3 222392110 222392198 -5132380 + MLT2E LTR ERVL 529 620 -8 * 391 294 83 0 chr3 222392200 222392309 -5132269 + ERVL LTR ERVL 28 145 -5619 7889 271 53 44 chr3 222392519 222395334 -5129244 + ERVL LTR ERVL 392 3374 -2390 2194 110 0 10 chr3 222395334 222395644 -5128934 + AluSq SINE Alu 1 307 -6 7889 271 53 44 chr3 222395644 222395708 -5128870 + ERVL LTR ERVL 3374 3436 -2328 242 219 117 73 chr3 222395708 222395845 -5128733 + MLT2F LTR ERVL 429 571 -92 607 264 6 12 chr3 222395851 222396014 -5128564 + MLT2E LTR ERVL 467 628 0 353 263 125 44 chr3 222396027 222396187 -5128391 - MIR SINE MIR -58 204 32 2165 81 40 0 chr3 222396444 222396742 -5127836 - AluY SINE Alu -1 310 1 984 315 82 13 chr3 222397387 222397841 -5126737 + L1ME3A LINE L1 5441 5922 -248 361 291 106 17 chr3 222398098 222398277 -5126301 + L1ME3A LINE L1 5962 6156 -14 247 275 220 0 chr3 222398715 222398824 -5125754 - MIR SINE MIR -116 146 14 244 323 89 68 chr3 222399250 222399485 -5125093 + L2 LINE L2 2947 3186 -86 267 279 23 12 chr3 222400515 222400601 -5123977 - MIR3 SINE MIR -19 189 103 322 318 78 13 chr3 222400613 222400767 -5123811 + MER5A DNA MER1_type 20 183 -6 1345 99 30 5 chr3 222401819 222402021 -5122557 + L1PB1 LINE L1 5941 6147 -4 865 103 0 0 chr3 222402045 222402161 -5122417 + FLAM_C SINE Alu 9 124 -19 189 269 19 19 chr3 222402421 222402473 -5122105 + L3 LINE CR1 1520 1571 -6 207 274 178 34 chr3 222402781 222402927 -5121651 + L2 LINE L2 3098 3264 -8 246 222 175 56 chr3 222404050 222404138 -5120440 + L2 LINE L2 1634 1743 -1571 1469 244 19 8 chr3 222404138 222404499 -5120079 - MLT1A1 LTR MaLR 0 365 1 246 222 175 56 chr3 222404499 222404536 -5120042 + L2 LINE L2 1743 1774 -1540 291 387 12 6 chr3 222405802 222405975 -5118603 - L2 LINE L2 -290 2982 2809 23 0 0 0 chr3 222406693 222406716 -5117862 + GC_rich Low_complexity Low_complexity 1 23 0 260 270 102 36 chr3 222407143 222407280 -5117298 - MIR3 SINE MIR -55 153 8 194 274 0 65 chr3 222407516 222407578 -5117000 - MIR SINE MIR -3 259 202 194 328 16 31 chr3 222408420 222408484 -5116094 - MIR SINE MIR -151 111 49 2312 70 10 0 chr3 222408524 222408824 -5115754 + AluSq SINE Alu 1 303 -10 714 223 146 34 chr3 222408856 222409089 -5115489 - MIR SINE MIR 0 262 4 415 283 142 58 chr3 222409384 222409610 -5114968 + MIR SINE MIR 11 255 -7 1823 117 0 4 chr3 222409654 222409918 -5114660 + AluSc SINE Alu 39 301 -8 198 0 0 0 chr3 222409968 222409990 -5114588 + (CAAAA)n Simple_repeat Simple_repeat 3 24 0 341 320 124 38 chr3 222410371 222410765 -5113813 - L2 LINE L2 -58 3255 2828 257 91 0 0 chr3 222410830 222410863 -5113715 - L2 LINE L2 -18 3254 3222 197 311 0 16 chr3 222411388 222411449 -5113129 - L2 LINE L2 -3 3269 3210 345 267 66 18 chr3 222412143 222412292 -5112286 + MIR SINE MIR 46 207 -55 1871 186 37 15 chr3 222413258 222413610 -5110968 - MLT1A1 LTR MaLR 0 365 5 502 264 80 30 chr3 222413795 222413996 -5110582 - LTR16C LTR ERVL 0 491 281 263 286 0 14 chr3 222414379 222414449 -5110129 + GA-rich Low_complexity Low_complexity 4 72 0 2386 70 0 0 chr3 222414555 222414855 -5109723 + AluY SINE Alu 1 300 -11 519 274 87 65 chr3 222414938 222415503 -5109075 - L1ME4a LINE L1 -94 6027 5439 1671 167 7 10 chr3 222415503 222415796 -5108782 + AluJo SINE Alu 1 292 -20 519 274 87 65 chr3 222415796 222415901 -5108677 - L1ME4a LINE L1 -682 5439 5338 298 240 125 21 chr3 222416356 222416452 -5108126 + MER81 DNA DNA 3 108 -6 479 285 35 66 chr3 222416453 222416709 -5107869 - L2 LINE L2 -503 2811 2564 249 242 67 98 chr3 222416748 222416942 -5107636 - L2 LINE L2 -894 2420 2233 184 256 0 85 chr3 222417396 222417413 -5107165 - MIR3 SINE MIR 0 208 191 1519 112 0 40 chr3 222417413 222417662 -5106916 + AluSx SINE Alu 61 299 -13 184 256 0 85 chr3 222417662 222417726 -5106852 - MIR3 SINE MIR -17 191 134 189 349 16 0 chr3 222418146 222418209 -5106369 - MIR SINE MIR -151 111 48 2081 119 6 0 chr3 222420169 222420480 -5104098 + AluSq SINE Alu 1 313 0 700 242 103 31 chr3 222420841 222421035 -5103543 + MER3 DNA MER1_type 2 209 0 905 182 33 0 chr3 222421550 222421731 -5102847 + MER5A DNA MER1_type 1 187 -2 4132 151 17 29 chr3 222422109 222422283 -5102295 + MER50 LTR ERV1 1 176 -558 2365 83 0 3 chr3 222422283 222422595 -5101983 + AluY SINE Alu 1 311 0 4132 151 17 29 chr3 222422595 222423140 -5101438 + MER50 LTR ERV1 176 711 -23 272 235 242 15 chr3 222423530 222423662 -5100916 + MIR SINE MIR 95 256 -6 918 226 19 68 chr3 222423690 222423955 -5100623 + MIR SINE MIR 11 262 0 590 256 71 18 chr3 222424982 222425150 -5099428 + MER5B DNA MER1_type 1 177 -1 1672 81 9 0 chr3 222425386 222425608 -5098970 + L1PA8 LINE L1 5931 6154 -18 39 22 0 0 chr3 222425608 222425654 -5098924 + AT_rich Low_complexity Low_complexity 1 46 0 419 81 32 81 chr3 222425654 222425839 -5098739 + (TTATA)n Simple_repeat Simple_repeat 5 180 0 354 273 75 59 chr3 222425840 222426093 -5098485 + L1ME4a LINE L1 5708 5964 -157 2283 187 45 18 chr3 222426098 222426607 -5097971 - L1MB3 LINE L1 -19 6164 5642 892 239 32 92 chr3 222426861 222427208 -5097370 + MER102b DNA MER1_type 1 326 -15 321 351 13 20 chr3 222427224 222427375 -5097203 - MIR3 SINE MIR -48 160 11 1159 176 9 167 chr3 222427375 222427942 -5096636 - L1ME1 LINE L1 -6 6160 5697 2286 87 0 0 chr3 222428162 222428461 -5096117 + AluY SINE Alu 1 299 -12 2347 72 0 0 chr3 222428667 222428960 -5095618 + AluY SINE Alu 1 293 -18 1179 226 39 16 chr3 222428962 222429268 -5095310 - L1ME1 LINE L1 -469 5693 5381 412 265 39 64 chr3 222429529 222429812 -5094766 - L1MB3 LINE L1 -2268 5540 5265 407 308 49 27 chr3 222429895 222430080 -5094498 - L1MB3 LINE L1 -948 5198 5010 2360 60 0 3 chr3 222430090 222430390 -5094188 - AluY SINE Alu -12 299 1 343 247 0 37 chr3 222430426 222430507 -5094071 + AluJ/FLAM SINE Alu 1 78 -224 855 223 18 18 chr3 222430769 222431043 -5093535 + AluYa5 SINE Alu 26 299 -12 1381 169 29 22 chr3 222431261 222431539 -5093039 + AluJo SINE Alu 15 294 -18 242 243 21 132 chr3 222432203 222432347 -5092231 - MIR SINE MIR -61 147 20 307 312 83 45 chr3 222432585 222432742 -5091836 + L2 LINE L2 3115 3277 -36 198 118 0 0 chr3 222432748 222432782 -5091796 + (TGAA)n Simple_repeat Simple_repeat 2 35 0 396 0 0 0 chr3 222433540 222433584 -5090994 + (CA)n Simple_repeat Simple_repeat 2 45 0 410 256 101 82 chr3 222433597 222433816 -5090762 + MIR SINE MIR 3 225 -37 875 229 17 0 chr3 222434436 222434611 -5089967 + MER5A DNA MER1_type 10 187 -2 330 278 63 24 chr3 222434854 222434980 -5089598 - LTR67 LTR ERVL -17 540 410 684 0 0 0 chr3 222435824 222435900 -5088678 + (GGAA)n Simple_repeat Simple_repeat 4 79 0 192 241 37 0 chr3 222437169 222437223 -5087355 + L2 LINE L2 3258 3313 0 425 19 19 0 chr3 222437413 222437467 -5087111 + (TTATA)n Simple_repeat Simple_repeat 2 56 0 252 254 42 51 chr3 222438629 222438747 -5085831 - L2 LINE L2 -222 3050 2934 589 215 43 43 chr3 222438890 222439053 -5085525 - MLT1J2 LTR MaLR -5 445 283 355 271 41 41 chr3 222439054 222439176 -5085402 + MIR SINE MIR 68 189 -73 22 0 0 0 chr3 222439190 222439212 -5085366 + AT_rich Low_complexity Low_complexity 1 22 0 229 321 0 0 chr3 222439216 222439297 -5085281 - MIR SINE MIR -9 253 173 753 312 72 36 chr3 222439385 222439776 -5084802 + L2 LINE L2 2896 3300 -13 232 279 0 16 chr3 222442055 222442116 -5082462 + GA-rich Low_complexity Low_complexity 2 61 0 222 208 123 38 chr3 222442594 222442700 -5081878 - MIR3 SINE MIR -87 121 7 2235 124 0 0 chr3 222442978 222443284 -5081294 + AluSg SINE Alu 1 306 -4 2524 205 33 39 chr3 222444187 222444801 -5079777 - L1ME2 LINE L1 0 6164 5555 216 278 10 62 chr3 222444935 222445032 -5079546 + MIR3 SINE MIR 99 190 -18 651 257 124 97 chr3 222445156 222445670 -5078908 - MLT1L LTR MaLR 0 615 88 1162 288 59 41 chr3 222445856 222446343 -5078235 + MLT1H LTR MaLR 1 537 -12 189 321 0 0 chr3 222448473 222448529 -5076049 - MIR SINE MIR -66 142 87 345 263 0 109 chr3 222448921 222449077 -5075501 - MIR3 SINE MIR -17 191 53 200 293 27 0 chr3 222449326 222449401 -5075177 - MER5A DNA MER1_type -6 183 107 1958 115 43 4 chr3 222449997 222450275 -5074303 - AluJb SINE Alu -23 289 1 301 265 175 28 chr3 222450307 222450629 -5073949 + L2 LINE L2 2673 3059 -254 256 331 45 15 chr3 222450659 222450792 -5073786 - MIR3 SINE MIR -71 137 1 2630 251 85 71 chr3 222451027 222452137 -5072441 - MER69B DNA AcHobo -5 1221 97 354 295 36 14 chr3 222453503 222453642 -5070936 + MIR3 SINE MIR 40 181 -27 847 73 0 0 chr3 222456129 222456239 -5068339 + AluSg/x SINE Alu 201 310 0 2318 92 14 3 chr3 222456310 222456604 -5067974 + AluSq SINE Alu 1 297 -16 428 234 28 9 chr3 222457150 222457257 -5067321 - L2 LINE L2 -1 3271 3163 2594 17 41 0 chr3 222458100 222458394 -5066184 - AluY SINE Alu -5 306 1 580 250 89 5 chr3 222458395 222458596 -5065982 - MIR SINE MIR -4 258 33 215 337 48 35 chr3 222458762 222458963 -5065615 - MIR3 SINE MIR -29 179 20 407 339 0 18 chr3 222459241 222459412 -5065166 - MIR SINE MIR -47 215 48 280 252 145 38 chr3 222460521 222460652 -5063926 - L2 LINE L2 0 3313 3169 36518 63 7 3 chr3 222460657 222465128 -5059450 + HERVL LTR ERVL 260 4747 -907 687 125 0 0 chr3 222465273 222465369 -5059209 - AluY SINE Alu -214 97 2 208 324 49 20 chr3 222466169 222466271 -5058307 + L2 LINE L2 3168 3272 0 404 252 30 23 chr3 222466891 222467022 -5057556 - MIR SINE MIR -12 250 119 279 273 41 88 chr3 222469071 222469265 -5055313 + MIR SINE MIR 8 192 -70 3175 124 16 2 chr3 222469499 222469998 -5054580 - L1MA5 LINE L1 -16 6284 5779 6830 181 80 10 chr3 222470012 222472391 -5052187 - L1 LINE L1 -2237 4971 2388 270 0 0 0 chr3 222472391 222472421 -5052157 + (TTTA)n Simple_repeat Simple_repeat 2 31 0 6830 181 80 10 chr3 222472421 222472640 -5051938 - L1 LINE L1 -4820 2388 2186 1124 217 18 0 chr3 222472612 222472829 -5051749 - L1 LINE L1 -5274 1935 1715 * 232 272 0 49 chr3 222472833 222472914 -5051664 - L1 LINE L1 -6409 800 724 2125 203 250 35 chr3 222472935 222473586 -5050992 - L1 LINE L1 -6418 791 1 389 308 24 47 chr3 222473727 222473896 -5050682 + L2 LINE L2 2891 3055 -217 438 20 0 0 chr3 222474086 222474137 -5050441 + (TTA)n Simple_repeat Simple_repeat 2 52 0 2312 92 0 0 chr3 222474139 222474420 -5050158 - AluSq SINE Alu -32 281 1 197 279 72 36 chr3 222475670 222475781 -5048797 + MIR SINE MIR 89 203 -59 323 206 175 10 chr3 222475920 222476017 -5048561 + MLT1C LTR MaLR 1 113 -354 1343 190 42 45 chr3 222476111 222476162 -5048416 + MLT1C LTR MaLR 132 182 -285 2200 121 0 6 chr3 222476162 222476476 -5048102 + AluSx SINE Alu 1 312 0 1343 190 42 45 chr3 222476476 222476761 -5047817 + MLT1C LTR MaLR 182 467 0 210 279 0 16 chr3 222477261 222477322 -5047256 + MIR SINE MIR 24 83 -125 3600 81 6 12 chr3 222479618 222480114 -5044464 + HERVL-A1 LTR ERVL 5162 5654 0 2976 108 30 5 chr3 222480114 222480547 -5044031 + MLT2A1 LTR ERVL 1 444 0 521 270 126 0 chr3 222480556 222480730 -5043848 - L2 LINE L2 -278 3035 2840 3387 215 26 22 chr3 222481052 222481199 -5043379 + MER63C DNA MER1_type 1 146 -914 2099 210 43 64 chr3 222481199 222481762 -5042816 - MLT2B3 LTR ERVL 0 554 4 3387 215 26 22 chr3 222481762 222482418 -5042160 + MER63C DNA MER1_type 146 807 -123 479 155 113 31 chr3 222482427 222482524 -5042054 - FLAM_A SINE Alu -22 120 16 710 187 26 19 chr3 222482525 222482680 -5041898 + MER63C DNA MER1_type 776 931 0 976 128 0 0 chr3 222483042 222483175 -5041403 + FLAM_C SINE Alu 1 133 -10 23 54 0 0 chr3 222483177 222483214 -5041364 + AT_rich Low_complexity Low_complexity 1 37 0 2190 138 0 0 chr3 222483432 222483744 -5040834 + AluSx SINE Alu 1 312 0 196 304 14 14 chr3 222483991 222484060 -5040518 + L2 LINE L2 3157 3225 -47 787 233 57 5 chr3 222484515 222484708 -5039870 + MIR SINE MIR 60 262 0 468 257 42 28 chr3 222484806 222484950 -5039628 + MIR3 SINE MIR 15 160 -48 349 315 17 51 chr3 222484956 222485134 -5039444 + MER5B DNA MER1_type 7 178 0 818 266 120 17 chr3 222485148 222485505 -5039073 + L2 LINE L2 2920 3313 0 232 311 118 0 chr3 222486487 222486622 -5037956 + MER103 DNA DNA 16 166 0 331 39 58 0 chr3 222486740 222486792 -5037786 + (TTTG)n Simple_repeat Simple_repeat 3 57 0 716 300 34 16 chr3 222486952 222487275 -5037303 + L1ME2 LINE L1 40 368 -6028 3687 234 40 29 chr3 222487617 222489652 -5034926 + L1ME2 LINE L1 4177 6223 -10 469 264 101 17 chr3 222491466 222491644 -5032934 + MIR SINE MIR 2 194 -68 2165 103 0 0 chr3 222492771 222493072 -5031506 + AluSx SINE Alu 1 301 -11 271 254 0 0 chr3 222493085 222493144 -5031434 + MIR SINE MIR 91 149 -59 203 164 0 146 chr3 222493546 222493601 -5030977 + MIR SINE MIR 103 149 -59 2301 82 0 0 chr3 222494049 222494353 -5030225 + AluSx SINE Alu 1 304 -8 468 286 6 54 chr3 222494516 222494684 -5029894 - MLT1J2 LTR MaLR -288 162 3 347 268 102 7 chr3 222497588 222497753 -5026825 - MIR3 SINE MIR -4 204 22 2824 141 27 11 chr3 222498131 222498606 -5025972 - L1PA16 LINE L1 -1 6165 5683 297 291 60 0 chr3 222498638 222498755 -5025823 - MIR SINE MIR -111 151 28 1983 84 4 7 chr3 222499155 222499428 -5025150 + AluSq SINE Alu 1 272 -41 630 190 0 14 chr3 222499742 222499884 -5024694 - AluSc SINE Alu -7 302 163 511 287 29 43 chr3 222500719 222500928 -5023650 - MLT1L LTR MaLR -409 206 1 810 163 54 76 chr3 222500951 222501135 -5023443 + MER5A DNA MER1_type 6 185 -4 262 278 263 29 chr3 222501272 222501477 -5023101 - MIR SINE MIR -6 256 4 199 274 88 62 chr3 222501963 222502076 -5022502 + L2 LINE L2 3138 3253 -19 200 245 0 20 chr3 222503030 222503079 -5021499 - MIR SINE MIR -136 72 25 2072 138 0 0 chr3 222504090 222504402 -5020176 + AluSx SINE Alu 1 312 0 266 276 95 17 chr3 222504932 222505048 -5019530 - MLT1J LTR MaLR -386 125 1 350 258 82 88 chr3 222505050 222505516 -5019062 + HAL1b LINE L1 235 697 -651 1168 168 61 53 chr3 222505546 222505808 -5018770 - AluJo SINE Alu -21 291 28 2393 84 3 0 chr3 222508597 222508907 -5015671 - AluSq SINE Alu -2 311 1 451 260 7 27 chr3 222509709 222509859 -5014719 - MER103 DNA DNA 0 166 20 216 404 9 9 chr3 222510557 222510671 -5013907 + L2 LINE L2 2597 2710 -604 2320 86 0 0 chr3 222511365 222511669 -5012909 + AluSq SINE Alu 1 304 -9 308 258 75 11 chr3 222512851 222512944 -5011634 - L3 LINE CR1 -362 1215 1117 252 0 0 0 chr3 222513042 222513070 -5011508 + (CA)n Simple_repeat Simple_repeat 1 28 0 317 322 9 34 chr3 222513771 222513941 -5010637 - MIR SINE MIR -56 206 41 876 263 29 9 chr3 222514747 222515000 -5009578 + MIR SINE MIR 4 262 0 515 317 55 0 chr3 222515005 222515188 -5009390 - MIR SINE MIR -62 200 8 324 0 0 0 chr3 222515226 222515262 -5009316 + (CA)n Simple_repeat Simple_repeat 2 37 0 225 244 22 33 chr3 222515410 222515500 -5009078 - L1MC5 LINE L1 -36 7925 7837 967 234 160 43 chr3 222515712 222516080 -5008498 + MLT1D LTR MaLR 93 503 -2 418 303 42 12 chr3 222516926 222517091 -5007487 - MER112 DNA MER1_type -11 249 80 245 94 0 0 chr3 222517101 222517133 -5007445 + Tigger5 DNA MER2_type 2268 2299 -24 429 231 0 0 chr3 222517142 222517220 -5007358 - Tigger5 DNA MER2_type -2244 79 2 346 229 12 12 chr3 222517220 222517302 -5007276 - MER112 DNA MER1_type -178 82 1 2089 64 0 79 chr3 222517548 222517877 -5006701 - AluY SINE Alu -8 303 1 1821 115 7 4 chr3 222518287 222518556 -5006022 + AluSx SINE Alu 1 270 -42 302 0 26 0 chr3 222518557 222518595 -5005983 + (TAAA)n Simple_repeat Simple_repeat 2 40 0 372 324 113 14 chr3 222518673 222518815 -5005763 + MIR SINE MIR 22 177 -85 303 93 0 0 chr3 222519078 222519121 -5005457 + (GGGA)n Simple_repeat Simple_repeat 4 46 0 743 284 78 33 chr3 222519553 222520068 -5004510 + L1ME4a LINE L1 5320 5857 -264 310 269 173 6 chr3 222520098 222520254 -5004324 + L1ME4a LINE L1 5931 6112 -9 238 203 31 62 chr3 222520495 222520559 -5004019 + LTR16A1 LTR ERVL 58 119 -338 1020 216 173 32 chr3 222522042 222522330 -5002248 - MSTC LTR MaLR 0 428 73 2323 91 0 0 chr3 222522330 222522639 -5001939 - AluY SINE Alu -2 309 1 1020 216 173 32 chr3 222522639 222522725 -5001853 - MSTC LTR MaLR -355 73 1 855 182 0 0 chr3 222522893 222523041 -5001537 - FAM SINE Alu -26 159 12 472 189 22 0 chr3 222523634 222523724 -5000854 + MER58B DNA MER1_type 250 341 0 256 199 38 46 chr3 222524122 222524253 -5000325 + (CGGG)n Simple_repeat Simple_repeat 3 132 0 881 235 18 60 chr3 222524447 222524664 -4999914 - MER63A DNA MER1_type 0 210 3 246 128 0 0 chr3 222524669 222524708 -4999870 + (CATA)n Simple_repeat Simple_repeat 2 40 0 619 256 95 54 chr3 222524744 222524986 -4999592 + LTR16A LTR ERVL 56 307 -143 617 115 28 39 chr3 222525001 222525183 -4999395 + GA-rich Low_complexity Low_complexity 1 180 0 1188 116 0 32 chr3 222526510 222526700 -4997878 + AluJo SINE Alu 1 184 -128 342 294 113 40 chr3 222526748 222527173 -4997405 - HAL1 LINE L1 -947 1560 1105 180 0 0 0 chr3 222527230 222527250 -4997328 + (TTTG)n Simple_repeat Simple_repeat 1 20 0 198 0 0 0 chr3 222528106 222528128 -4996450 + (TG)n Simple_repeat Simple_repeat 2 23 0 193 273 121 0 chr3 222528667 222528733 -4995845 + L2 LINE L2 3197 3270 -2 356 312 39 78 chr3 222528854 222529085 -4995493 + L3 LINE CR1 1349 1570 -7 259 282 64 13 chr3 222531462 222531540 -4993038 - L3b LINE CR1 -315 1268 1187 247 290 48 57 chr3 222532751 222532875 -4991703 - L2 LINE L2 -1 3271 3149 741 180 8 0 chr3 222532890 222533012 -4991566 + FLAM_C SINE Alu 2 124 -19 21 0 0 0 chr3 222533012 222533033 -4991545 + AT_rich Low_complexity Low_complexity 1 21 0 1248 167 0 90 chr3 222533034 222533367 -4991211 - AluJo SINE Alu 0 317 12 936 130 13 0 chr3 222533403 222533557 -4991021 + AluSx SINE Alu 1 156 -156 447 257 29 19 chr3 222533703 222533909 -4990669 + AluSq SINE Alu 92 299 -14 732 178 112 13 chr3 222533990 222534142 -4990436 - MER5B DNA MER1_type -2 176 10 421 98 0 0 chr3 222534358 222534419 -4990159 + (TG)n Simple_repeat Simple_repeat 1 61 0 2208 148 3 6 chr3 222535081 222535426 -4989152 + MER7A DNA MER2_type 3 344 -2 25 0 0 0 chr3 222536110 222536135 -4988443 + AT_rich Low_complexity Low_complexity 1 25 0 2440 47 0 3 chr3 222536388 222536685 -4987893 - AluY SINE Alu -15 296 1 355 283 92 33 chr3 222536700 222536820 -4987758 - L2 LINE L2 -8 3264 3138 426 287 80 32 chr3 222537895 222538083 -4986495 + MIR3 SINE MIR 11 207 -1 183 42 0 0 chr3 222538127 222538151 -4986427 + (CA)n Simple_repeat Simple_repeat 2 25 0 226 156 22 22 chr3 222538997 222539042 -4985536 - MER94 DNA DNA 0 134 90 474 270 35 46 chr3 222539162 222539336 -4985242 + MIR SINE MIR 2 173 -89 339 275 54 25 chr3 222539822 222539942 -4984636 + MIR3 SINE MIR 30 156 -52 1929 157 6 0 chr3 222540012 222540350 -4984228 + L1 LINE L1 3308 3647 -2499 22 0 0 0 chr3 222540574 222540596 -4983982 + AT_rich Low_complexity Low_complexity 1 22 0 371 189 14 0 chr3 222540599 222540673 -4983905 + L1ME2 LINE L1 6080 6154 -10 337 289 128 37 chr3 222540723 222540746 -4983832 + L1MC4 LINE L1 7838 7858 -184 1938 160 39 104 chr3 222540746 222541208 -4983370 - MSTB1 LTR MaLR 0 432 1 337 289 128 37 chr3 222541208 222541371 -4983207 + L1MC4 LINE L1 7858 8041 -1 336 285 102 63 chr3 222541778 222542111 -4982467 + L1M4 LINE L1 2204 2549 -3597 237 352 91 10 chr3 222542177 222542376 -4982202 - L3 LINE CR1 -506 1071 857 1198 65 13 0 chr3 222542789 222542943 -4981635 + L1PA5 LINE L1 5995 6150 -4 283 336 42 0 chr3 222543146 222543265 -4981313 - L3 LINE CR1 -185 1392 1269 236 274 0 27 chr3 222543530 222543603 -4980975 - MIR3 SINE MIR -46 162 92 216 277 31 0 chr3 222543635 222543700 -4980878 - MIR SINE MIR -65 143 77 386 275 49 28 chr3 222543945 222544087 -4980491 - MER5A DNA MER1_type 0 189 45 * 452 281 22 22 chr3 222543985 222544120 -4980458 + MER5A DNA MER1_type 55 189 0 209 200 0 0 chr3 222544603 222544638 -4979940 + A-rich Low_complexity Low_complexity 1 35 0 392 245 232 0 chr3 222544889 222545040 -4979538 + MER5A DNA MER1_type 4 189 0 480 266 38 38 chr3 222545436 222545620 -4978958 - MIR3 SINE MIR -3 205 22 31 26 0 0 chr3 222546473 222546511 -4978067 + GC_rich Low_complexity Low_complexity 1 38 0 24 32 0 0 chr3 222546556 222546587 -4977991 + GC_rich Low_complexity Low_complexity 1 31 0 294 132 0 0 chr3 222546900 222546953 -4977625 + (TGAA)n Simple_repeat Simple_repeat 2 54 0 1667 78 136 12 chr3 222547075 222547332 -4977246 - AluSx SINE Alu -23 289 1 485 299 52 2 chr3 222548042 222548222 -4976356 - MIR SINE MIR -50 212 20 184 289 22 56 chr3 222548544 222548634 -4975944 - L2 LINE L2 -4 3268 3182 253 213 0 0 chr3 222548843 222548890 -4975688 - MSTD LTR MaLR 0 396 350 203 86 0 29 chr3 222548891 222548926 -4975652 + (TTTA)n Simple_repeat Simple_repeat 4 37 0 543 211 10 0 chr3 222548950 222549054 -4975524 - FAM SINE Alu -13 172 68 2098 101 7 17 chr3 222549096 222549393 -4975185 - AluSx SINE Alu -18 294 1 1687 169 87 24 chr3 222549398 222549730 -4974848 - MSTD LTR MaLR -43 353 1 1301 223 65 12 chr3 222549807 222550308 -4974270 + L1ME LINE L1 5091 5616 -548 489 216 0 0 chr3 222550348 222550445 -4974133 + AluJb SINE Alu 208 304 -8 280 200 0 100 chr3 222550451 222550521 -4974057 + MER63 DNA MER1_type 31 719 -117 1888 152 3 0 chr3 222550826 222551129 -4973449 - AluSx SINE Alu -8 304 1 365 279 108 12 chr3 222551194 222551340 -4973238 + MER5A DNA MER1_type 21 187 -2 256 217 43 43 chr3 222552151 222552220 -4972358 - MIR SINE MIR -113 149 81 464 217 47 0 chr3 222552418 222552524 -4972054 - MER81 DNA DNA 0 114 4 801 219 149 10 chr3 222552911 222553112 -4971466 + MIR SINE MIR 34 262 0 929 249 57 22 chr3 222553949 222554266 -4970312 + LTR16C LTR ERVL 164 491 0 263 287 114 0 chr3 222554277 222554394 -4970184 - MIR SINE MIR -63 145 44 1413 103 5 0 chr3 222554519 222554713 -4969865 - AluSp SINE Alu -118 195 1 14354 67 7 5 chr3 222554988 222556760 -4967818 + HERVL LTR ERVL 3395 5171 -483 1828 214 73 37 chr3 222556955 222557576 -4967002 + L1M2b LINE L1 1 767 -6442 881 170 0 47 chr3 222558023 222558194 -4966384 + AluJb SINE Alu 106 268 -44 649 261 229 50 chr3 222558207 222558670 -4965908 - L2 LINE L2 -172 3141 2547 1971 94 49 3 chr3 222558670 222558957 -4965621 + AluSg SINE Alu 1 300 -10 649 261 229 50 chr3 222558957 222559049 -4965529 - L2 LINE L2 -766 2547 2473 182 317 92 40 chr3 222559601 222559850 -4964728 - L2 LINE L2 -94 3178 2917 287 242 45 76 chr3 222560423 222560555 -4964023 - MIR SINE MIR -45 217 90 357 260 79 31 chr3 222560684 222560811 -4963767 - MIR SINE MIR -55 207 75 522 115 26 0 chr3 222560811 222560889 -4963689 + MADE1 DNA Mariner 1 80 0 933 167 83 17 chr3 222560917 222561122 -4963456 - MIR SINE MIR -6 256 44 2362 85 0 0 chr3 222561233 222561540 -4963038 - AluSc SINE Alu -2 307 1 1933 91 52 36 chr3 222562376 222562684 -4961894 + AluSp SINE Alu 1 313 0 919 273 41 2 chr3 222562754 222563003 -4961575 + MIR SINE MIR 9 262 0 219 114 0 0 chr3 222563318 222563353 -4961225 + (CCCCAG)n Simple_repeat Simple_repeat 6 40 0 258 279 0 0 chr3 222563593 222563661 -4960917 + G-rich Low_complexity Low_complexity 1 68 0 271 271 143 43 chr3 222564282 222564422 -4960156 - MIR SINE MIR -46 216 63 231 152 197 15 chr3 222564623 222564689 -4959889 + MIR3 SINE MIR 112 189 -19 2213 94 0 0 chr3 222564725 222565024 -4959554 + AluSx SINE Alu 1 299 -13 990 167 0 11 chr3 222565024 222565204 -4959374 + AluJb SINE Alu 134 311 -1 348 267 81 37 chr3 222565575 222565736 -4958842 + L2 LINE L2 2947 3114 -158 571 333 9 19 chr3 222565751 222565967 -4958611 + MIR SINE MIR 12 225 -37 2082 87 0 0 chr3 222566293 222566569 -4958009 + AluSx SINE Alu 20 295 -17 331 266 156 8 chr3 222567751 222567879 -4956699 + MIR3 SINE MIR 39 185 -23 2202 98 0 0 chr3 222568450 222568756 -4955822 + AluSg SINE Alu 1 306 -4 881 290 74 15 chr3 222570818 222571150 -4953428 + MLT1I LTR MaLR 63 401 -8 1989 172 44 26 chr3 222571275 222571807 -4952771 + MLT2A2 LTR ERVL 1 554 0 919 222 149 79 chr3 222571886 222572174 -4952404 + MLT1C LTR MaLR 8 337 -130 2301 77 0 0 chr3 222572174 222572472 -4952106 + AluSp SINE Alu 1 298 -15 919 222 149 79 chr3 222572472 222572611 -4951967 + MLT1C LTR MaLR 337 465 -2 1368 221 83 26 chr3 222574547 222574996 -4949582 + L1MD3 LINE L1 6911 7333 -662 1838 143 6 16 chr3 222574996 222575311 -4949267 + AluJb SINE Alu 1 312 0 1368 221 83 26 chr3 222575311 222575820 -4948758 + L1MD3 LINE L1 7333 7987 -8 216 135 0 0 chr3 222576432 222576469 -4948109 + (TCCC)n Simple_repeat Simple_repeat 3 39 0 2126 108 10 0 chr3 222576864 222577170 -4947408 - AluY SINE Alu -2 309 1 212 310 0 0 chr3 222577318 222577376 -4947202 + (CA)n Simple_repeat Simple_repeat 1 58 0 323 78 20 0 chr3 222577691 222577742 -4946836 + (CA)n Simple_repeat Simple_repeat 1 52 0 185 244 0 141 chr3 222578856 222578934 -4945644 - L3 LINE CR1 -4 1573 1507 1170 138 32 81 chr3 222579425 222579671 -4944907 - MLT1B LTR MaLR 0 390 157 1031 107 0 0 chr3 222579679 222579829 -4944749 + AluSc SINE Alu 155 304 -5 859 186 6 6 chr3 222579829 222579985 -4944593 - MLT1B LTR MaLR -234 156 1 981 197 81 63 chr3 222580231 222580515 -4944063 - MER33 DNA MER1_type -9 315 27 203 163 41 41 chr3 222581446 222581495 -4943083 - MIR SINE MIR -61 201 153 208 221 191 0 chr3 222582262 222582330 -4942248 - MIR SINE MIR 0 262 182 248 223 245 11 chr3 222582495 222582589 -4941989 - MIR3 SINE MIR -41 167 52 516 253 41 20 chr3 222582862 222583008 -4941570 + MIR SINE MIR 112 260 -2 608 254 28 22 chr3 222583119 222583300 -4941278 - MER5A DNA MER1_type -1 188 7 1903 124 7 3 chr3 222583945 222584250 -4940328 - AluSx SINE Alu 0 306 1 817 214 93 131 chr3 222584493 222584854 -4939724 + MLT1C LTR MaLR 54 398 -69 1896 119 7 7 chr3 222584854 222585172 -4939406 - AluSc SINE Alu 0 309 1 817 214 93 131 chr3 222585172 222585231 -4939347 + MLT1C LTR MaLR 398 458 -9 268 330 68 0 chr3 222585452 222585540 -4939038 + MLT1K LTR MaLR 42 135 -453 234 0 0 0 chr3 222585836 222585862 -4938716 + (CA)n Simple_repeat Simple_repeat 2 27 0 2024 100 6 35 chr3 222588113 222588424 -4936154 + AluSx SINE Alu 1 302 -10 935 166 0 3 chr3 222588694 222589010 -4935568 + (TG)n Simple_repeat Simple_repeat 1 315 0 236 361 0 21 chr3 222589112 222589209 -4935369 + L2 LINE L2 2785 2879 -435 229 311 42 17 chr3 222589700 222589819 -4934759 + MLT1L LTR MaLR 369 490 -125 339 328 103 52 chr3 222589899 222590189 -4934389 - L2 LINE L2 -64 3208 2904 2859 210 31 20 chr3 222590533 222590607 -4933971 - MER82 DNA MER2_type -1 652 580 1811 345 25 33 chr3 222590607 222591097 -4933481 - MER66B LTR ERV1 0 486 1 2859 210 31 20 chr3 222591097 222591661 -4932917 - MER82 DNA MER2_type -73 580 7 2365 113 0 0 chr3 222591663 222591972 -4932606 + AluSx SINE Alu 1 309 -3 1062 260 70 35 chr3 222592040 222592471 -4932107 - MLT1J1 LTR MaLR 0 446 1 661 266 112 17 chr3 222593351 222593584 -4930994 - MIR SINE MIR 0 262 8 2360 104 3 0 chr3 222594218 222594516 -4930062 - AluSx SINE Alu -13 299 1 323 303 31 97 chr3 222595246 222595441 -4929137 + MIR3 SINE MIR 18 199 -9 272 267 286 9 chr3 222597105 222597210 -4927368 + MER5B DNA MER1_type 2 135 -43 333 296 121 8 chr3 222597215 222597347 -4927231 - MIR3 SINE MIR -48 160 14 490 304 58 23 chr3 222597377 222597548 -4927030 - MER5B DNA MER1_type -1 177 1 841 208 49 16 chr3 222597885 222598068 -4926510 - MER5A DNA MER1_type 0 189 1 809 175 81 6 chr3 222598849 222599009 -4925569 + MER5B DNA MER1_type 1 172 -6 491 254 22 0 chr3 222599665 222599799 -4924779 - MER69A DNA AcHobo 0 177 41 849 290 45 5 chr3 222600315 222600536 -4924042 - MIR SINE MIR -9 253 24 300 305 76 84 chr3 222600536 222600781 -4923797 - L2 LINE L2 -371 2943 2700 2161 108 14 0 chr3 222600781 222601069 -4923509 + AluSx SINE Alu 1 292 -20 300 305 76 84 chr3 222601069 222601167 -4923411 - L2 LINE L2 -614 2700 2603 397 294 12 14 chr3 222601295 222601478 -4923100 + MIR SINE MIR 28 206 -56 260 331 30 82 chr3 222601616 222601852 -4922726 + L2 LINE L2 2960 3176 -96 2364 97 0 3 chr3 222601852 222602163 -4922415 - AluSq SINE Alu -3 310 1 260 331 30 82 chr3 222602163 222602255 -4922323 + L2 LINE L2 3176 3271 -1 440 240 140 51 chr3 222603274 222603380 -4921198 - L1ME4a LINE L1 -12 6109 6014 435 83 0 0 chr3 222603380 222603440 -4921138 + (TA)n Simple_repeat Simple_repeat 2 61 0 2111 120 33 0 chr3 222603440 222603740 -4920838 - AluSx SINE Alu -2 310 1 440 240 140 51 chr3 222603740 222604003 -4920575 - L1ME4a LINE L1 -106 6015 5706 2128 112 34 3 chr3 222604749 222605044 -4919534 + AluSp SINE Alu 1 304 -9 183 129 0 0 chr3 222605576 222605607 -4918971 + (G)n Simple_repeat Simple_repeat 1 31 0 189 74 0 0 chr3 222605651 222605678 -4918900 + (G)n Simple_repeat Simple_repeat 1 27 0 2290 208 21 47 chr3 222606226 222606760 -4917818 - MLT1H1 LTR MaLR 0 555 36 2175 114 3 10 chr3 222606803 222607110 -4917468 + AluSq SINE Alu 1 305 -8 272 311 80 61 chr3 222608423 222608687 -4915891 + L2 LINE L2 2593 2861 -453 238 304 33 11 chr3 222609217 222609309 -4915269 - MIR3 SINE MIR -15 193 100 215 318 0 0 chr3 222609735 222609798 -4914780 + L2 LINE L2 3251 3313 0 618 263 5 63 chr3 222609802 222609992 -4914586 + MIR3 SINE MIR 27 205 -3 184 353 20 10 chr3 222610088 222610190 -4914388 - MIR SINE MIR -37 225 123 1075 303 55 55 chr3 222610238 222611021 -4913557 + L1MEc LINE L1 123 905 -5491 240 250 132 0 chr3 222611033 222611109 -4913469 - MIR SINE MIR -102 106 21 248 297 0 0 chr3 222612473 222612537 -4912041 - Charlie4 DNA MER1_type -4 1957 1894 515 235 35 47 chr3 222612574 222612744 -4911834 - L2 LINE L2 0 3313 3146 341 228 15 7 chr3 222612746 222612844 -4911734 + AluJ/FLAM SINE Alu 1 76 -226 1533 221 123 11 chr3 222613061 222613523 -4911055 + L1ME2 LINE L1 5636 6149 -15 202 289 124 21 chr3 222614106 222614203 -4910375 + MIR SINE MIR 100 206 -56 1511 163 72 29 chr3 222614969 222615245 -4909333 - AluJo SINE Alu -21 291 4 501 160 0 0 chr3 222615532 222615638 -4908940 + (TGGA)n Simple_repeat Simple_repeat 3 108 0 430 258 117 8 chr3 222616028 222616156 -4908422 - MIR3 SINE MIR -43 165 24 2513 90 0 0 chr3 222616848 222617159 -4907419 + AluSq SINE Alu 3 313 0 223 244 0 0 chr3 222617473 222617518 -4907060 + GA-rich Low_complexity Low_complexity 2 46 0 262 322 46 40 chr3 222618014 222618166 -4906412 + MIR3 SINE MIR 45 197 -11 208 169 34 85 chr3 222618518 222618577 -4906001 + L2 LINE L2 3207 3262 -10 483 200 22 74 chr3 222619449 222619584 -4904994 + MER3 DNA MER1_type 82 209 0 315 250 43 86 chr3 222619903 222620019 -4904559 + L2 LINE L2 3150 3260 -12 1554 208 82 6 chr3 222620077 222620419 -4904159 + MLT1A2 LTR MaLR 3 370 -4 432 370 24 17 chr3 222621922 222622219 -4902359 - LTR16C LTR ERVL -14 477 179 2308 178 35 56 chr3 222622517 222623033 -4901545 - MLT1D LTR MaLR 0 505 1 392 348 7 0 chr3 222623233 222623374 -4901204 + MIR SINE MIR 9 150 -112 235 283 182 0 chr3 222623414 222623513 -4901065 - L2 LINE L2 -7 3306 3190 22 0 0 0 chr3 222623849 222623871 -4900707 + AT_rich Low_complexity Low_complexity 1 22 0 25 0 0 0 chr3 222626725 222626750 -4897828 + GC_rich Low_complexity Low_complexity 1 25 0 4480 153 10 6 chr3 222626851 222627684 -4896894 + L1MA3 LINE L1 4354 5189 -957 5862 105 16 16 chr3 222627684 222628358 -4896220 + L1MA3 LINE L1 5409 6082 -223 387 0 0 0 chr3 222628358 222628401 -4896177 + (TA)n Simple_repeat Simple_repeat 1 43 0 2048 89 61 4 chr3 222628402 222628682 -4895896 - AluSp SINE Alu -17 296 1 5862 105 16 16 chr3 222628682 222628883 -4895695 + L1MA3 LINE L1 6081 6305 0 215 283 106 79 chr3 222628893 222629216 -4895362 + L2 LINE L2 2699 3025 -247 1305 231 41 18 chr3 222629227 222629565 -4895013 + MLT1A2 LTR MaLR 1 346 -28 199 250 59 15 chr3 222629567 222629635 -4894943 - L2 LINE L2 -3 3269 3199 440 141 56 0 chr3 222629643 222629714 -4894864 - MIR SINE MIR -115 147 73 184 365 0 0 chr3 222630292 222630366 -4894212 + MIR SINE MIR 50 123 -85 202 180 16 49 chr3 222630830 222630891 -4893687 + (CGGG)n Simple_repeat Simple_repeat 1 59 0 239 251 203 9 chr3 222632433 222632558 -4892020 + L2 LINE L2 2919 3064 -208 242 217 12 60 chr3 222632790 222632873 -4891705 - MIR SINE MIR -55 207 129 474 213 209 0 chr3 222632943 222633085 -4891493 - MER5A DNA MER1_type -1 177 14 242 272 0 0 chr3 222633203 222633266 -4891312 - MIR SINE MIR -65 143 87 309 327 127 56 chr3 222633851 222634175 -4890403 - L2 LINE L2 -10 3262 2916 341 184 0 13 chr3 222634175 222634251 -4890327 + GA-rich Low_complexity Low_complexity 3 77 0 1167 34 11 28 chr3 222634253 222634430 -4890148 + (GAAA)n Simple_repeat Simple_repeat 2 175 0 275 304 72 40 chr3 222634548 222634673 -4889905 + L2 LINE L2 3139 3267 -5 1927 101 21 98 chr3 222634802 222635130 -4889448 - AluSx SINE Alu -9 303 1 31 26 0 0 chr3 222635468 222635506 -4889072 + AT_rich Low_complexity Low_complexity 1 38 0 2493 28 0 0 chr3 222635713 222636000 -4888578 + L1PA3 LINE L1 5866 6152 -3 211 262 37 47 chr3 222636694 222636801 -4887777 - MER5A DNA MER1_type -80 109 4 1412 201 101 62 chr3 222636982 222637419 -4887159 - MER31B LTR ERV1 0 466 13 2426 80 6 3 chr3 222637448 222637760 -4886818 + AluSq SINE Alu 1 313 0 21 0 0 0 chr3 222640279 222640300 -4884278 + AT_rich Low_complexity Low_complexity 1 21 0 800 198 55 18 chr3 222640537 222640754 -4883824 + Tigger3(Golem) DNA MER2_type 2711 2935 -94 571 291 24 0 chr3 222641029 222641194 -4883384 + MIR3 SINE MIR 12 180 -28 2351 84 7 3 chr3 222641197 222641494 -4883084 - AluSx SINE Alu -14 298 1 232 337 122 0 chr3 222643196 222643294 -4881284 + L2 LINE L2 3201 3310 -3 182 155 338 0 chr3 222643325 222643396 -4881182 - L2 LINE L2 -38 3234 3140 1152 172 10 20 chr3 222643693 222643891 -4880687 + AluJo SINE Alu 93 288 -24 1080 169 26 4 chr3 222644025 222644256 -4880322 - MER46A DNA MER2_type 0 236 1 793 137 8 24 chr3 222645166 222645293 -4879285 - L1PA8 LINE L1 -357 5797 5690 2425 88 0 3 chr3 222645293 222645634 -4878944 + L1PA8 LINE L1 5823 6162 -10 793 137 8 24 chr3 222645634 222645671 -4878907 - L1MC/D LINE L1 -464 5690 5654 331 300 36 27 chr3 222645676 222645786 -4878792 - L1MC4 LINE L1 -1339 6703 6593 2043 254 66 11 chr3 222645913 222646172 -4878406 - MER45B DNA AcHobo -358 682 439 2363 87 0 20 chr3 222646172 222646494 -4878084 - AluSq SINE Alu 0 313 1 2043 254 66 11 chr3 222646494 222646856 -4877722 - MER45B DNA AcHobo -601 439 19 281 274 130 27 chr3 222647585 222647731 -4876847 - MIR3 SINE MIR -34 174 14 451 304 58 23 chr3 222647761 222647932 -4876646 - MER5B DNA MER1_type -1 177 1 777 208 49 16 chr3 222648268 222648451 -4876127 - MER5A DNA MER1_type 0 189 1 355 219 0 0 chr3 222649215 222649288 -4875290 - Charlie5 DNA MER1_type -2539 73 1 1975 113 26 0 chr3 222650121 222650386 -4874192 + AluSq SINE Alu 1 272 -41 230 133 0 22 chr3 222650386 222650431 -4874147 + (GGAA)n Simple_repeat Simple_repeat 2 45 0 225 186 23 0 chr3 222652404 222652447 -4872131 - L2 LINE L2 -5 3308 3265 1491 103 5 0 chr3 222652553 222652747 -4871831 + AluSx SINE Alu 1 195 -117 248 287 114 0 chr3 222652871 222652988 -4871590 + MIR SINE MIR 44 170 -63 295 161 113 0 chr3 222652999 222653061 -4871517 - LTR16C LTR ERVL 0 491 423 186 43 0 0 chr3 222654154 222654177 -4870401 + (T)n Simple_repeat Simple_repeat 1 23 0 1730 146 0 75 chr3 222655011 222655333 -4869245 + AluJo SINE Alu 9 306 -6 265 303 0 0 chr3 222655475 222655564 -4869014 - L2 LINE L2 -219 3053 2965 311 318 0 40 chr3 222655707 222655855 -4868723 - MIR SINE MIR -56 206 65 205 369 20 27 chr3 222656016 222656165 -4868413 - MER5A DNA MER1_type -9 180 33 488 266 8 16 chr3 222656039 222656163 -4868415 + MER5B DNA MER1_type 33 155 -23 2059 149 3 0 chr3 222656256 222656552 -4868026 - AluSq SINE Alu -16 297 1 2085 130 138 5 chr3 222656767 222657145 -4867433 + MSTA LTR MaLR 1 428 0 497 250 141 0 chr3 222657280 222657472 -4867106 - LTR33 LTR ERVL -302 219 1 549 290 7 0 chr3 222658193 222658331 -4866247 - L2 LINE L2 0 3272 3134 2398 97 0 0 chr3 222658471 222658771 -4865807 + AluSq SINE Alu 1 300 -13 416 207 9 138 chr3 222658868 222659100 -4865478 - L1MC4 LINE L1 -1 8041 7840 22 35 0 0 chr3 222660516 222660545 -4864033 + GC_rich Low_complexity Low_complexity 1 29 0 1635 82 5 0 chr3 222661166 222661362 -4863216 - AluSq SINE Alu -116 197 1 335 274 111 8 chr3 222664866 222664983 -4859595 - MER5A DNA MER1_type -2 187 59 2001 161 0 0 chr3 222665077 222665375 -4859203 + AluSx SINE Alu 1 298 -14 1000 29 29 7 chr3 222665566 222665702 -4858876 + L1PA3 LINE L1 5715 5853 -302 262 323 0 42 chr3 222666531 222666627 -4857951 + MIR3 SINE MIR 85 176 -32 197 277 62 100 chr3 222667611 222667741 -4856837 + MIR SINE MIR 104 228 -34 181 366 14 0 chr3 222668336 222668407 -4856171 - L2 LINE L2 0 3313 3242 929 258 26 67 chr3 222668419 222668837 -4855741 - MLT1I LTR MaLR -8 401 1 259 172 24 13 chr3 222668991 222669081 -4855497 + L1ME2 LINE L1 6033 6123 -43 393 328 103 0 chr3 222669284 222669488 -4855090 - L3 LINE CR1 -256 1321 1097 222 200 0 22 chr3 222670136 222670181 -4854397 + (TG)n Simple_repeat Simple_repeat 1 44 0 378 60 0 0 chr3 222670301 222670351 -4854227 - THE1C LTR MaLR -325 50 1 556 218 24 8 chr3 222670946 222671070 -4853508 + MLT1A2 LTR MaLR 1 126 -248 773 186 68 6 chr3 222671075 222671236 -4853342 - MLT1B LTR MaLR -219 171 1 24 53 0 0 chr3 222671550 222671588 -4852990 + AT_rich Low_complexity Low_complexity 1 38 0 301 333 0 38 chr3 222672155 222672287 -4852291 - MIR3 SINE MIR -48 160 34 27 35 0 0 chr3 222673531 222673560 -4851018 + AT_rich Low_complexity Low_complexity 1 29 0 27 65 0 26 chr3 222674464 222674510 -4850068 + GC_rich Low_complexity Low_complexity 1 46 -29 216 111 0 0 chr3 222674510 222674546 -4850032 + (CA)n Simple_repeat Simple_repeat 1 36 0 27 65 0 26 chr3 222674546 222674576 -4850002 + GC_rich Low_complexity Low_complexity 46 75 0 33 25 0 0 chr3 222674667 222674707 -4849871 + GC_rich Low_complexity Low_complexity 1 40 0 448 331 25 33 chr3 222678506 222678748 -4845830 + LTR16C LTR ERVL 238 477 -14 266 345 106 9 chr3 222679974 222680087 -4844491 - L2 LINE L2 0 3272 3149 395 191 107 0 chr3 222680209 222680293 -4844285 - MIR3 SINE MIR -12 196 104 28 29 0 0 chr3 222681015 222681050 -4843528 + GC_rich Low_complexity Low_complexity 1 35 0 441 217 47 0 chr3 222682930 222683036 -4841542 - MER81 DNA DNA 0 114 4 741 219 149 10 chr3 222683425 222683626 -4840952 + MIR SINE MIR 34 262 0 22 35 0 0 chr3 222685289 222685318 -4839260 + GC_rich Low_complexity Low_complexity 1 29 0 31 0 0 0 chr3 222685702 222685733 -4838845 + AT_rich Low_complexity Low_complexity 1 31 0 1491 228 64 19 chr3 222685946 222686367 -4838211 - L1ME2 LINE L1 -116 6048 5609 808 222 5 37 chr3 222686369 222686558 -4838020 - MER63A DNA MER1_type -1 209 27 442 214 0 10 chr3 222686560 222686658 -4837920 - AluJb SINE Alu -8 304 208 229 278 93 0 chr3 222686697 222686794 -4837784 - L1ME2 LINE L1 -553 5613 5508 200 368 0 17 chr3 222687175 222687292 -4837286 + GA-rich Low_complexity Low_complexity 4 118 0 187 289 124 21 chr3 222687874 222687971 -4836607 + MIR SINE MIR 100 206 -56 228 125 36 18 chr3 222689150 222689206 -4835372 + T-rich Low_complexity Low_complexity 3 59 0 472 184 0 16 chr3 222689314 222689439 -4835139 + GA-rich Low_complexity Low_complexity 2 124 0 30 27 0 0 chr3 222689855 222689892 -4834686 + GC_rich Low_complexity Low_complexity 1 37 0 313 240 0 42 chr3 222689959 222690055 -4834523 + C-rich Low_complexity Low_complexity 4 95 0 401 282 42 21 chr3 222890963 222891105 -4633473 + L1MEd LINE L1 945 1089 -5030 1481 180 70 6 chr3 222891148 222891475 -4633103 - MLT1A1 LTR MaLR -11 354 7 396 214 10 10 chr3 222891505 222891603 -4632975 + MLT1B LTR MaLR 76 173 -217 384 234 0 0 chr3 222891616 222891710 -4632868 + (TG)n Simple_repeat Simple_repeat 1 94 0 548 226 170 0 chr3 222891710 222891869 -4632709 + MLT1B LTR MaLR 192 377 -13 299 267 38 23 chr3 222891879 222892010 -4632568 + L1MEd LINE L1 1075 1207 -4912 1847 206 15 10 chr3 222892248 222892655 -4631923 + L1MA4 LINE L1 5717 6125 -175 300 228 8 57 chr3 222892880 222893003 -4631575 + (CGTG)n Simple_repeat Simple_repeat 1 117 0 209 195 0 0 chr3 222894130 222894171 -4630407 + GA-rich Low_complexity Low_complexity 2 42 0 208 50 0 50 chr3 222894256 222894296 -4630282 + (CCCCCA)n Simple_repeat Simple_repeat 4 41 0 201 276 68 0 chr3 222895502 222895665 -4628913 + (CCCCAG)n Simple_repeat Simple_repeat 3 176 0 240 308 35 0 chr3 222895713 222895885 -4628693 + (CCCCAG)n Simple_repeat Simple_repeat 1 178 0 201 301 129 0 chr3 222895888 222895981 -4628597 + MIR3 SINE MIR 97 201 -7 345 293 54 0 chr3 222896265 222896412 -4628166 - L1ME4a LINE L1 -6 6115 5961 727 279 51 25 chr3 222896586 222896823 -4627755 - MIR SINE MIR 0 262 20 40 0 0 0 chr3 222897030 222897070 -4627508 + AT_rich Low_complexity Low_complexity 1 40 0 628 244 25 0 chr3 222897587 222897747 -4626831 - MIR3 SINE MIR -11 197 34 622 126 21 0 chr3 222900377 222900472 -4624106 - FLAM_A SINE Alu -25 117 21 817 143 53 53 chr3 222900559 222900748 -4623830 + MER53 DNA DNA 1 189 0 316 294 124 26 chr3 222901056 222901250 -4623328 + MIR SINE MIR 26 238 -24 205 286 48 0 chr3 222901790 222901853 -4622725 + MIR SINE MIR 84 149 -113 186 245 113 0 chr3 222902011 222902064 -4622514 + MIR SINE MIR 142 200 -62 586 227 28 40 chr3 222902065 222902191 -4622387 + L1MC1 LINE L1 6147 6272 -61 2265 103 7 0 chr3 222902191 222902483 -4622095 - AluSp SINE Alu -19 294 1 586 227 28 40 chr3 222902483 222902532 -4622046 + L1MC1 LINE L1 6272 6320 -13 2294 88 0 7 chr3 222903475 222903769 -4620809 - AluSx SINE Alu -20 292 1 469 263 105 19 chr3 222903853 222904062 -4620516 + MIR SINE MIR 22 248 -14 199 194 0 0 chr3 222904563 222904599 -4619979 - L3 LINE CR1 -4 1573 1538 1048 105 0 0 chr3 222904603 222904736 -4619842 + AluSq/x SINE Alu 1 133 -179 2174 139 3 0 chr3 222904738 222905041 -4619537 + AluSx SINE Alu 1 304 -8 240 231 22 110 chr3 222905041 222905132 -4619446 + MIR SINE MIR 40 122 -86 197 284 60 0 chr3 222905211 222905278 -4619300 + MIR SINE MIR 55 125 -83 372 316 53 8 chr3 222906013 222906146 -4618432 - L2 LINE L2 -1 3312 3174 1752 143 9 22 chr3 222906146 222906496 -4618082 - MER4A LTR ERV1 0 664 261 506 153 20 20 chr3 222906496 222906594 -4617984 - MER4A LTR ERV1 -566 98 1 8750 101 70 13 chr3 222906601 222908032 -4616546 - MER4A-int LTR ERV1 -2 6596 5085 1135 151 0 0 chr3 222908038 222908197 -4616381 - AluSg/x SINE Alu -13 297 139 777 130 0 0 chr3 222908216 222908339 -4616239 + L1PA16 LINE L1 6036 6158 -8 38 0 0 0 chr3 222908339 222908377 -4616201 + AT_rich Low_complexity Low_complexity 1 38 0 931 152 40 0 chr3 222908395 222908546 -4616032 + AluSg/x SINE Alu 156 312 0 282 94 0 38 chr3 222908547 222908600 -4615978 + L1MA7 LINE L1 6128 6178 -113 3440 175 29 26 chr3 222908650 222909375 -4615203 - LTR8A LTR ERV1 0 727 1 1946 134 4 34 chr3 222909398 222909747 -4614831 - MER4A LTR ERV1 0 664 263 584 122 0 20 chr3 222909749 222909847 -4614731 - MER4A LTR ERV1 -568 96 1 5296 94 46 36 chr3 222909856 222910771 -4613807 - MER4A-int LTR ERV1 -1838 4760 3837 * 9264 137 146 117 chr3 222910770 222911151 -4613427 - MER4A-int LTR ERV1 -2917 3681 3312 2457 69 0 0 chr3 222911151 222911439 -4613139 + AluY SINE Alu 1 288 -23 9264 137 146 117 chr3 222911439 222913063 -4611515 - MER4A-int LTR ERV1 -3286 3312 1736 2142 127 0 0 chr3 222913063 222913346 -4611232 + AluSq SINE Alu 1 283 -30 9264 137 146 117 chr3 222913346 222913760 -4610818 - MER4A-int LTR ERV1 -4862 1736 1335 207 69 0 0 chr3 222913760 222913789 -4610789 + (CA)n Simple_repeat Simple_repeat 2 30 0 9264 137 146 117 chr3 222913789 222914167 -4610411 - MER4A-int LTR ERV1 -5263 1335 969 2437 86 0 10 chr3 222914167 222914469 -4610109 - AluY SINE Alu -12 299 1 9264 137 146 117 chr3 222914469 222915162 -4609416 - MER4A-int LTR ERV1 -5629 969 1 1763 142 3 38 chr3 222915165 222915523 -4609055 - MER4A LTR ERV1 0 664 261 649 111 0 10 chr3 222915523 222915622 -4608956 - MER4A LTR ERV1 -566 98 1 1808 204 9 3 chr3 222915847 222915876 -4608702 + MLT2B1 LTR ERVL 1 28 -492 4378 98 22 0 chr3 222915876 222916497 -4608081 + MER41B LTR ERV1 1 635 0 1808 204 9 3 chr3 222916497 222916801 -4607777 + MLT2B1 LTR ERVL 28 336 -184 233 29 29 0 chr3 222916879 222916913 -4607665 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2182 109 4 0 chr3 222916915 222917191 -4607387 - AluSx SINE Alu -33 279 3 247 294 163 58 chr3 222917283 222917559 -4607019 - MLT1K LTR MaLR -187 401 97 414 57 0 0 chr3 222917632 222917685 -4606893 + (TCTCCC)n Simple_repeat Simple_repeat 1 53 0 217 190 35 52 chr3 222917755 222917871 -4606707 + (CGGG)n Simple_repeat Simple_repeat 1 114 0 240 202 31 70 chr3 222917912 222918041 -4606537 + C-rich Low_complexity Low_complexity 6 129 0 182 130 28 65 chr3 222918058 222918166 -4606412 + (CCCCG)n Simple_repeat Simple_repeat 1 104 0 243 221 26 35 chr3 222918170 222918283 -4606295 + C-rich Low_complexity Low_complexity 3 114 0 10910 58 18 12 chr3 222918642 222920029 -4604549 + SVA Other Other 1 1396 0 216 0 0 0 chr3 222920056 222920080 -4604498 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 423 0 0 0 chr3 222920677 222920724 -4603854 + (CA)n Simple_repeat Simple_repeat 2 48 0 245 247 13 26 chr3 222921740 222921817 -4602761 - MIR SINE MIR -113 95 20 2314 91 3 3 chr3 222922352 222922648 -4601930 - AluSc SINE Alu -13 296 1 262 327 88 9 chr3 222924174 222924287 -4600291 + L2 LINE L2 3191 3312 -1 2130 94 11 4 chr3 222924731 222925006 -4599572 - AluSg SINE Alu -33 277 1 1245 117 0 0 chr3 222925012 222925175 -4599403 - AluSg/x SINE Alu -16 296 134 2402 94 3 0 chr3 222925175 222925472 -4599106 - AluSg SINE Alu -12 298 1 1689 156 101 32 chr3 222925485 222925832 -4598746 + MER93b LTR ERV1 1 371 -2 240 258 0 56 chr3 222926356 222926445 -4598133 + L3 LINE CR1 647 730 -847 405 328 62 10 chr3 222926522 222926714 -4597864 + MIR SINE MIR 20 221 -41 433 216 181 0 chr3 222927259 222927375 -4597203 - Charlie4 DNA MER1_type -7 1954 1818 214 315 15 11 chr3 222927442 222927534 -4597044 - MIR SINE MIR -113 95 20 257 361 119 16 chr3 222928085 222928174 -4596404 + MIR SINE MIR 12 90 -172 2374 93 0 0 chr3 222928174 222928474 -4596104 - AluSx SINE Alu -12 300 1 257 361 119 16 chr3 222928474 222928578 -4596000 + MIR SINE MIR 90 225 -37 4674 48 16 16 chr3 222928648 222929685 -4594893 + MER11A LTR ERVK 1 1266 0 279 274 57 19 chr3 222929866 222930023 -4594555 + L2 LINE L2 1454 1616 -1698 1894 313 74 33 chr3 222930158 222931320 -4593258 + L2 LINE L2 2063 3274 -39 360 0 0 0 chr3 222931324 222931364 -4593214 + (TG)n Simple_repeat Simple_repeat 2 41 0 315 156 19 29 chr3 222931424 222931496 -4593082 - MIR SINE MIR -129 79 5 254 317 209 15 chr3 222931702 222931970 -4592608 - L2 LINE L2 0 3313 2994 2206 72 10 14 chr3 222932328 222932621 -4591957 + AluY SINE Alu 20 311 0 235 179 90 0 chr3 222932658 222932725 -4591853 + L1ME4a LINE L1 5815 5887 -1921 2294 89 0 10 chr3 222932745 222933037 -4591541 + AluSq SINE Alu 9 297 -16 338 266 81 40 chr3 222933059 222933232 -4591346 + L1ME4a LINE L1 5941 6120 -1 451 309 157 27 chr3 222933760 222934136 -4590442 - L2 LINE L2 0 3313 2889 195 246 35 0 chr3 222934613 222934670 -4589908 - MIR SINE MIR -117 145 87 261 57 0 0 chr3 222934962 222934997 -4589581 + (CA)n Simple_repeat Simple_repeat 1 35 0 314 265 166 0 chr3 222935372 222935523 -4589055 - MIR SINE MIR -4 258 83 1445 78 0 6 chr3 222936207 222936386 -4588192 - AluSg/x SINE Alu -11 298 121 2219 124 3 6 chr3 222936386 222936700 -4587878 - AluSq SINE Alu 0 313 1 22 35 0 0 chr3 222936700 222936729 -4587849 + AT_rich Low_complexity Low_complexity 1 29 0 2100 93 18 81 chr3 222936932 222937265 -4587313 - AluSp SINE Alu 0 313 2 257 260 0 52 chr3 222937575 222937652 -4586926 + MIR3 SINE MIR 109 181 -27 234 184 0 0 chr3 222938529 222938567 -4586011 - L1MC1 LINE L1 -262 6071 6034 227 200 0 0 chr3 222938641 222938681 -4585897 - L1MC1 LINE L1 -260 6073 6034 232 184 0 0 chr3 222939138 222939176 -4585402 - L1MC1 LINE L1 -262 6071 6034 235 200 0 0 chr3 222939212 222939252 -4585326 - L1MC1 LINE L1 -260 6073 6034 235 200 0 0 chr3 222939288 222939328 -4585250 - L1MC1 LINE L1 -260 6073 6034 229 184 0 0 chr3 222940235 222940273 -4584305 - L1MC1 LINE L1 -260 6073 6036 240 179 0 0 chr3 222940273 222940312 -4584266 - L1MC1 LINE L1 -260 6073 6035 226 205 0 0 chr3 222940730 222940769 -4583809 - L1MC1 LINE L1 -260 6073 6035 246 179 0 0 chr3 222940845 222940884 -4583694 - L1MC1 LINE L1 -260 6073 6035 243 179 0 0 chr3 222941100 222941139 -4583439 - L1MC1 LINE L1 -260 6073 6035 226 205 0 0 chr3 222941176 222941215 -4583363 - L1MC1 LINE L1 -260 6073 6035 238 184 0 0 chr3 222941558 222941596 -4582982 - L1MC1 LINE L1 -262 6071 6034 246 179 0 0 chr3 222941709 222941748 -4582830 - L1MC1 LINE L1 -260 6073 6035 243 179 0 0 chr3 222941964 222942003 -4582575 - L1MC1 LINE L1 -260 6073 6035 240 179 0 0 chr3 222942257 222942296 -4582282 - L1MC1 LINE L1 -260 6073 6035 227 167 0 0 chr3 222942297 222942333 -4582245 - L1MC1 LINE L1 -262 6071 6036 240 179 0 0 chr3 222942333 222942372 -4582206 - L1MC1 LINE L1 -260 6073 6035 231 179 0 0 chr3 222942523 222942562 -4582016 - L1MC1 LINE L1 -260 6073 6035 238 184 0 0 chr3 222942640 222942678 -4581900 - L1MC1 LINE L1 -262 6071 6034 226 205 0 0 chr3 222942790 222942829 -4581749 - L1MC1 LINE L1 -260 6073 6035 259 175 0 0 chr3 222942904 222942944 -4581634 - L1MC1 LINE L1 -260 6073 6034 242 200 0 0 chr3 222943056 222943096 -4581482 - L1MC1 LINE L1 -260 6073 6034 235 204 93 19 chr3 222943132 222943186 -4581392 - L1MC1 LINE L1 -260 6073 6016 238 184 0 0 chr3 222943552 222943590 -4580988 - L1MC1 LINE L1 -262 6071 6034 242 200 0 0 chr3 222943626 222943666 -4580912 - L1MC1 LINE L1 -260 6073 6034 226 205 0 0 chr3 222943702 222943741 -4580837 - L1MC1 LINE L1 -260 6073 6035 226 205 0 0 chr3 222944419 222944458 -4580120 - L1MC1 LINE L1 -260 6073 6035 246 179 0 0 chr3 222944571 222944610 -4579968 - L1MC1 LINE L1 -260 6073 6035 235 184 0 0 chr3 222944905 222944943 -4579635 - L1MC1 LINE L1 -260 6073 6036 240 179 0 0 chr3 222944943 222944982 -4579596 - L1MC1 LINE L1 -260 6073 6035 26 30 0 0 chr3 222945221 222945254 -4579324 + GC_rich Low_complexity Low_complexity 1 33 0 27 49 0 0 chr3 222945325 222945366 -4579212 + GC_rich Low_complexity Low_complexity 1 41 0 2184 93 0 31 chr3 222946156 222946437 -4578141 + AluSx SINE Alu 1 272 -40 225 0 0 0 chr3 222946437 222946462 -4578116 + (CAAAA)n Simple_repeat Simple_repeat 1 25 0 2184 93 0 31 chr3 222946462 222946502 -4578076 + AluSx SINE Alu 272 312 0 815 292 73 0 chr3 222946563 222946782 -4577796 - MIR SINE MIR 0 262 28 433 266 80 22 chr3 222947635 222947861 -4576717 - LTR16C LTR ERVL 0 491 253 209 253 218 0 chr3 222948042 222948129 -4576449 - MIR SINE MIR -111 151 46 1798 158 45 32 chr3 222948773 222949152 -4575426 - L1MB8 LINE L1 -5 6173 5790 2420 165 51 109 chr3 222949167 222949646 -4574932 - L1MB8 LINE L1 -1288 4858 4353 2097 107 3 22 chr3 222949646 222949964 -4574614 - AluSx SINE Alu 0 312 1 2420 165 51 109 chr3 222949964 222950040 -4574538 - L1MB8 LINE L1 -1793 4353 4274 1908 129 0 0 chr3 222950040 222950326 -4574252 - AluSx SINE Alu -17 295 10 2420 165 51 109 chr3 222950326 222950491 -4574087 - L1MB8 LINE L1 -1872 4274 4179 256 135 0 0 chr3 222950932 222950969 -4573609 - tRNA-Cys-TGC tRNA tRNA -38 37 1 24 0 0 0 chr3 222951092 222951116 -4573462 + AT_rich Low_complexity Low_complexity 1 24 0 471 239 109 91 chr3 222951744 222951933 -4572645 + L1ME3A LINE L1 5579 5778 -392 2193 102 0 0 chr3 222951933 222952227 -4572351 + AluSx SINE Alu 1 294 -18 471 239 109 91 chr3 222952227 222952367 -4572211 + L1ME3A LINE L1 5778 5914 -256 1206 158 45 41 chr3 222952534 222952780 -4571798 - MLT1D LTR MaLR 0 505 259 321 303 49 0 chr3 222952909 222953031 -4571547 - L1ME LINE L1 -410 5711 5584 1822 189 68 62 chr3 222954450 222954948 -4569630 + MLT1D LTR MaLR 1 501 -4 1168 237 123 17 chr3 222954958 222955308 -4569270 - L1MC1 LINE L1 -1867 5941 5555 599 325 26 10 chr3 222956298 222956492 -4568086 - L3 LINE CR1 -27 1550 1354 942 62 8 8 chr3 222957035 222957163 -4567415 - AluY SINE Alu -183 128 1 362 247 90 42 chr3 222957395 222957561 -4567017 - MER104 DNA Tc2 -3 177 4 2169 98 0 3 chr3 222957813 222958110 -4566468 + AluSx SINE Alu 2 297 -15 225 200 0 0 chr3 222958470 222958515 -4566063 + T-rich Low_complexity Low_complexity 1 45 0 265 357 8 54 chr3 222958718 222958847 -4565731 - L2 LINE L2 -17 3255 3133 290 311 47 28 chr3 222959573 222959679 -4564899 - MIR SINE MIR -67 141 34 1946 81 0 8 chr3 222959846 222960106 -4564472 + AluSg SINE Alu 53 310 0 25 0 0 0 chr3 222960942 222960967 -4563611 + GC_rich Low_complexity Low_complexity 1 25 0 1319 76 0 68 chr3 222961723 222961972 -4562606 + AluSq SINE Alu 82 313 0 228 35 0 0 chr3 222962357 222962386 -4562192 + (TC)n Simple_repeat Simple_repeat 2 30 0 1779 161 10 7 chr3 222963112 222963417 -4561161 + AluJo SINE Alu 1 306 -6 254 321 71 36 chr3 222963806 222963946 -4560632 - L2 LINE L2 -76 3196 3052 2261 81 0 0 chr3 222964044 222964340 -4560238 + AluSx SINE Alu 1 296 -16 258 290 0 50 chr3 222965474 222965574 -4559004 - L1MC5 LINE L1 -171 7790 7696 189 0 0 0 chr3 222966899 222966920 -4557658 + (TTTTTA)n Simple_repeat Simple_repeat 4 24 0 2273 75 0 7 chr3 222966934 222967229 -4557349 - AluSq SINE Alu -15 298 6 793 129 0 50 chr3 222967815 222967954 -4556624 + AluSg/x SINE Alu 165 296 -16 528 195 49 8 chr3 222968964 222969087 -4555491 + MLT1A1 LTR MaLR 7 134 -231 1862 69 4 4 chr3 222969205 222969452 -4555126 - AluY SINE Alu -64 247 1 239 337 22 11 chr3 222969699 222969791 -4554787 + MIR SINE MIR 44 136 -72 2440 187 19 164 chr3 222970721 222971322 -4553256 - L1M4 LINE L1 -1716 4430 3923 508 179 11 0 chr3 222971322 222971417 -4553161 + AluSg/x SINE Alu 205 300 -12 2440 187 19 164 chr3 222971417 222971722 -4552856 - L1M4 LINE L1 -2223 3923 3575 245 250 0 0 chr3 222972260 222972316 -4552262 - MIR SINE MIR -71 137 82 1221 167 4 12 chr3 222972604 222972844 -4551734 - L1PA13 LINE L1 0 6163 5926 1093 192 0 0 chr3 222973644 222973852 -4550726 - AluSx SINE Alu -98 214 7 21 36 0 0 chr3 222973867 222973895 -4550683 + AT_rich Low_complexity Low_complexity 1 28 0 1082 195 5 18 chr3 222973944 222974165 -4550413 + AluJb SINE Alu 70 287 -25 1267 157 112 61 chr3 222974223 222974517 -4550061 - AluSx SINE Alu -3 309 1 2129 102 3 0 chr3 222974585 222974870 -4549708 + AluSx SINE Alu 3 288 -24 207 0 0 0 chr3 222974870 222974893 -4549685 + (TTAAA)n Simple_repeat Simple_repeat 3 25 0 203 250 21 0 chr3 222974953 222975001 -4549577 + L2 LINE L2 3250 3298 -15 2542 95 15 82 chr3 222975231 222975693 -4548885 + MER4A LTR ERV1 1 431 -233 525 232 77 33 chr3 222975710 222975891 -4548687 + MER4C LTR ERV1 277 465 0 234 264 112 104 chr3 222975892 222976161 -4548417 - L2 LINE L2 -12 3260 2990 2364 63 17 0 chr3 222976407 222976706 -4547872 - AluSc SINE Alu -5 304 1 2306 101 0 0 chr3 222978442 222978748 -4545830 + AluSx SINE Alu 1 306 -6 213 337 65 0 chr3 222979538 222979630 -4544948 - L2 LINE L2 -22 3250 3153 446 311 40 7 chr3 222979794 222979942 -4544636 + L3 LINE CR1 1328 1480 -97 452 177 135 7 chr3 222980152 222980293 -4544285 - MLT1C LTR MaLR -6 461 303 183 279 0 0 chr3 222980473 222980516 -4544062 + MIR3 SINE MIR 164 206 -2 197 296 99 0 chr3 222980594 222980665 -4543913 + MIR SINE MIR 98 175 -87 25 75 0 0 chr3 222980756 222980809 -4543769 + GC_rich Low_complexity Low_complexity 1 53 0 411 247 24 53 chr3 222981910 222982080 -4542498 + L1MC4a LINE L1 5679 5843 -1965 210 268 36 0 chr3 222982377 222982433 -4542145 - MIR3 SINE MIR -6 202 145 953 122 0 0 chr3 222982615 222982784 -4541794 + FLAM_C SINE Alu 3 171 0 2558 133 57 5 chr3 222983304 222983710 -4540868 - MSTC LTR MaLR -1 427 1 1163 224 64 61 chr3 222983809 222984139 -4540439 + MER82 DNA MER2_type 321 651 -2 635 270 185 46 chr3 222984308 222984508 -4540070 - Charlie7 DNA MER1_type -1923 689 518 1469 161 138 0 chr3 222984508 222984769 -4539809 - AluJb SINE Alu -1 301 5 635 270 185 46 chr3 222984769 222985028 -4539550 - Charlie7 DNA MER1_type -2094 518 166 390 237 137 7 chr3 222985053 222985192 -4539386 - MER104 DNA Tc2 -18 162 6 363 186 383 66 chr3 222985235 222985402 -4539176 + MIR SINE MIR 5 224 -38 513 0 0 0 chr3 222986689 222986746 -4537832 + (CA)n Simple_repeat Simple_repeat 2 58 0 247 265 20 10 chr3 222987054 222987156 -4537422 + (TATATG)n Simple_repeat Simple_repeat 4 106 0 24 0 0 0 chr3 222987218 222987242 -4537336 + AT_rich Low_complexity Low_complexity 1 24 0 1775 117 4 0 chr3 222987422 222987678 -4536900 - AluSq SINE Alu -8 305 49 23 0 0 0 chr3 222987780 222987803 -4536775 + AT_rich Low_complexity Low_complexity 1 23 0 296 125 0 0 chr3 222987878 222987918 -4536660 + Alu SINE Alu 1 40 -268 975 119 0 8 chr3 222987921 222988055 -4536523 - AluJo/FLAM SINE Alu -169 133 1 4767 134 136 8 chr3 222988055 222988914 -4535664 - Tigger2 DNA MER2_type -79 2639 1671 1651 135 0 0 chr3 222988946 222989183 -4535395 + MER1B DNA MER1_type 103 339 0 1006 163 21 42 chr3 222989183 222989373 -4535205 - Tigger2 DNA MER2_type -1039 1679 1494 784 207 7 0 chr3 222989373 222989518 -4535060 + FRAM SINE Alu 1 146 -30 7014 131 77 45 chr3 222989527 222989891 -4534687 - Tigger2 DNA MER2_type -1204 1514 1163 1523 151 13 43 chr3 222989891 222990196 -4534382 - AluJo SINE Alu -16 296 1 7014 131 77 45 chr3 222990196 222990866 -4533712 - Tigger2 DNA MER2_type -1555 1163 420 2034 125 11 0 chr3 222990866 222991147 -4533431 - AluSx SINE Alu -11 301 18 7014 131 77 45 chr3 222991147 222991581 -4532997 - Tigger2 DNA MER2_type -2298 420 2 1615 142 16 81 chr3 222991877 222992186 -4532392 + AluJo SINE Alu 1 289 -23 1926 144 16 0 chr3 222992186 222992499 -4532079 + L1MB3 LINE L1 5820 6137 -46 348 182 0 0 chr3 222992499 222992554 -4532024 + U6 snRNA snRNA 1 55 -52 261 58 96 39 chr3 222992562 222992614 -4531964 + L1MB3 LINE L1 6128 6182 -1 2295 95 0 0 chr3 222993106 222993401 -4531177 + AluSq SINE Alu 1 295 -18 2246 103 0 0 chr3 222993405 222993707 -4530871 + AluSg SINE Alu 1 302 -8 2173 86 23 33 chr3 222995059 222995361 -4529217 + AluSq SINE Alu 1 299 -14 768 179 0 50 chr3 222995372 222995512 -4529066 + FLAM_C SINE Alu 1 133 0 2585 79 65 11 chr3 222995873 222996227 -4528351 + L1PB1 LINE L1 5777 6149 -2 823 188 67 0 chr3 222996357 222996506 -4528072 - FAM SINE Alu -16 159 1 441 116 29 14 chr3 222996666 222996735 -4527843 + AluJ/FLAM SINE Alu 2 71 -241 2182 125 3 0 chr3 222996750 222997055 -4527523 - AluSx SINE Alu -2 310 5 2318 92 0 0 chr3 222997814 222998109 -4526469 + AluSq SINE Alu 1 295 -18 2235 103 0 0 chr3 222998116 222998416 -4526162 + AluSg SINE Alu 3 302 -8 21 0 0 0 chr3 222999943 222999964 -4524614 + GC_rich Low_complexity Low_complexity 1 21 0 961 177 0 69 chr3 223000371 223000405 -4524173 + AluJb SINE Alu 113 148 -164 2233 95 3 7 chr3 223000405 223000700 -4523878 + AluSq SINE Alu 7 300 -13 961 177 0 69 chr3 223000700 223000868 -4523710 + AluJb SINE Alu 148 301 -11 1827 160 14 7 chr3 223001084 223001378 -4523200 + AluJb SINE Alu 1 296 -16 1709 194 48 6 chr3 223002029 223002359 -4522219 + MER2 DNA MER2_type 1 344 0 2046 137 0 10 chr3 223002942 223003242 -4521336 - AluSx SINE Alu -15 297 1 1014 196 0 0 chr3 223003372 223003540 -4521038 - FRAM SINE Alu -8 168 1 460 327 139 5 chr3 223005180 223005403 -4519175 + MIR SINE MIR 8 260 -2 2101 127 0 0 chr3 223005531 223005841 -4518737 + AluSq SINE Alu 1 310 0 2212 112 3 7 chr3 223006916 223007220 -4517358 + AluSx SINE Alu 2 304 -8 192 287 161 11 chr3 223008289 223008376 -4516202 - L2 LINE L2 -6 3307 3208 2369 94 0 0 chr3 223008390 223008687 -4515891 - AluSx SINE Alu -13 299 3 1617 199 65 17 chr3 223008819 223009222 -4515356 - MLT1C LTR MaLR -45 422 1 1143 81 0 0 chr3 223009632 223009768 -4514810 + AluSq/x SINE Alu 1 136 -177 1848 100 3 103 chr3 223009768 223009904 -4514674 + AluSq SINE Alu 1 92 -221 2252 81 0 18 chr3 223009904 223010218 -4514360 + AluSc SINE Alu 1 309 0 1848 100 3 103 chr3 223010218 223010399 -4514179 + AluSq SINE Alu 92 289 -24 199 275 28 121 chr3 223011569 223011606 -4512972 + L2 LINE L2 2948 2987 -285 2429 91 0 0 chr3 223011606 223011914 -4512664 - AluSg SINE Alu -2 308 1 199 275 28 121 chr3 223011914 223012058 -4512520 + L2 LINE L2 2987 3112 -160 26 0 0 27 chr3 223012731 223012750 -4511828 + AT_rich Low_complexity Low_complexity 1 20 -16 1587 158 79 11 chr3 223012750 223013029 -4511549 - AluJo SINE Alu -14 298 1 26 0 0 27 chr3 223013029 223013046 -4511532 + AT_rich Low_complexity Low_complexity 20 36 0 267 306 176 0 chr3 223013144 223013252 -4511326 - L2 LINE L2 -49 3223 3097 2228 116 0 0 chr3 223013781 223014082 -4510496 + AluSg SINE Alu 1 301 -9 303 360 30 0 chr3 223015058 223015158 -4509420 + MIR SINE MIR 42 144 -64 589 261 112 79 chr3 223015367 223015670 -4508908 - L2 LINE L2 0 3313 3001 1658 161 32 7 chr3 223016707 223016986 -4507592 + AluJo SINE Alu 5 290 -22 692 205 35 60 chr3 223017491 223017599 -4506979 + MLT1D LTR MaLR 1 103 -402 2131 106 3 17 chr3 223017599 223017900 -4506678 - AluSx SINE Alu -15 297 1 692 205 35 60 chr3 223017900 223017991 -4506587 + MLT1D LTR MaLR 103 195 -310 324 64 0 0 chr3 223018003 223018050 -4506528 + (CA)n Simple_repeat Simple_repeat 2 48 0 201 207 37 12 chr3 223018298 223018380 -4506198 + G-rich Low_complexity Low_complexity 2 85 0 312 226 0 0 chr3 223018456 223018549 -4506029 + G-rich Low_complexity Low_complexity 1 93 0 2047 139 3 3 chr3 223018934 223019237 -4505341 + AluSq SINE Alu 1 303 -10 21 0 0 0 chr3 223019312 223019333 -4505245 + AT_rich Low_complexity Low_complexity 1 21 0 315 247 142 38 chr3 223019600 223019839 -4504739 - L1ME4a LINE L1 -67 6054 5791 739 199 32 13 chr3 223019857 223020013 -4504565 - MER58A DNA MER1_type -29 195 37 2133 129 3 0 chr3 223020489 223020791 -4503787 + AluSq SINE Alu 1 303 -10 30 45 0 0 chr3 223021130 223021174 -4503404 + AT_rich Low_complexity Low_complexity 1 44 0 731 192 39 19 chr3 223021408 223021564 -4503014 - MER58A DNA MER1_type -29 195 37 21 0 0 0 chr3 223022103 223022124 -4502454 + AT_rich Low_complexity Low_complexity 1 21 0 2543 54 0 0 chr3 223022129 223022424 -4502154 - AluY SINE Alu -16 295 1 211 146 0 24 chr3 223023034 223023075 -4501503 + (TTTTTA)n Simple_repeat Simple_repeat 5 44 0 21 0 0 0 chr3 223024637 223024658 -4499920 + AT_rich Low_complexity Low_complexity 1 21 0 185 294 44 15 chr3 223026522 223026590 -4497988 - MIR SINE MIR -72 190 121 381 186 70 62 chr3 223027130 223027259 -4497319 - MER103 DNA DNA -27 139 10 1983 155 139 8 chr3 223028571 223028945 -4495633 + MSTA LTR MaLR 6 428 0 636 208 8 8 chr3 223029297 223029417 -4495161 - FLAM_A SINE Alu -13 120 1 2074 116 40 7 chr3 223029418 223029719 -4494859 - AluSx SINE Alu -1 311 1 2444 64 0 58 chr3 223029729 223030055 -4494523 - AluY SINE Alu -4 307 1 184 244 0 22 chr3 223030313 223030358 -4494220 - L2 LINE L2 -15 3257 3214 201 262 188 70 chr3 223030489 223030552 -4494026 + L2 LINE L2 2311 2365 -949 2076 123 7 10 chr3 223030552 223030854 -4493724 - AluSx SINE Alu -11 301 1 201 262 188 70 chr3 223030854 223031046 -4493532 + L2 LINE L2 2365 2596 -718 1580 211 0 7 chr3 223031060 223031349 -4493229 - AluJo SINE Alu -25 287 1 2142 58 55 31 chr3 223031358 223031650 -4492928 - AluY SINE Alu -12 299 1 385 357 84 41 chr3 223031661 223032209 -4492369 + L2 LINE L2 2698 3271 -1 224 293 0 0 chr3 223032386 223032444 -4492134 - MIR SINE MIR -114 94 37 189 0 0 0 chr3 223032744 223032765 -4491813 + (TA)n Simple_repeat Simple_repeat 2 22 0 1932 118 6 68 chr3 223032765 223033088 -4491490 - AluJb SINE Alu -9 303 1 1830 151 45 0 chr3 223033473 223033765 -4490813 - L1MC1 LINE L1 0 6333 6029 240 185 93 19 chr3 223033798 223033852 -4490726 - L1MC1 LINE L1 -260 6073 6016 230 205 0 0 chr3 223034140 223034179 -4490399 - L1MC1 LINE L1 -260 6073 6035 226 205 0 0 chr3 223034330 223034369 -4490209 - L1MC1 LINE L1 -260 6073 6035 228 205 0 0 chr3 223034514 223034553 -4490025 - L1MC1 LINE L1 -260 6073 6035 231 184 0 0 chr3 223035043 223035081 -4489497 - L1MC1 LINE L1 -260 6073 6036 240 179 0 0 chr3 223035081 223035120 -4489458 - L1MC1 LINE L1 -260 6073 6035 243 179 0 0 chr3 223035347 223035386 -4489192 - L1MC1 LINE L1 -260 6073 6035 228 205 0 0 chr3 223035461 223035500 -4489078 - L1MC1 LINE L1 -260 6073 6035 251 195 0 0 chr3 223035613 223035654 -4488924 - L1MC1 LINE L1 -260 6073 6033 252 188 62 0 chr3 223035765 223035813 -4488765 - L1MC1 LINE L1 -260 6073 6023 228 205 0 0 chr3 223035992 223036031 -4488547 - L1MC1 LINE L1 -260 6073 6035 225 225 0 0 chr3 223036247 223036287 -4488291 - L1MC1 LINE L1 -260 6073 6034 243 179 0 0 chr3 223036323 223036362 -4488216 - L1MC1 LINE L1 -260 6073 6035 225 167 0 0 chr3 223036363 223036399 -4488179 - L1MC1 LINE L1 -262 6071 6036 240 179 0 0 chr3 223036399 223036438 -4488140 - L1MC1 LINE L1 -260 6073 6035 240 179 0 0 chr3 223036437 223036476 -4488102 - L1MC1 LINE L1 -260 6073 6035 232 179 0 0 chr3 223036665 223036704 -4487874 - L1MC1 LINE L1 -260 6073 6035 238 184 0 0 chr3 223036781 223036819 -4487759 - L1MC1 LINE L1 -262 6071 6034 247 182 24 5 chr3 223037186 223037240 -4487338 - L1MC1 LINE L1 -260 6073 6020 236 200 0 0 chr3 223037376 223037416 -4487162 - L1MC1 LINE L1 -260 6073 6034 236 200 0 0 chr3 223037566 223037606 -4486972 - L1MC1 LINE L1 -260 6073 6034 236 200 0 0 chr3 223037642 223037682 -4486896 - L1MC1 LINE L1 -260 6073 6034 254 175 0 0 chr3 223037946 223037986 -4486592 - L1MC1 LINE L1 -260 6073 6034 229 200 0 0 chr3 223038022 223038062 -4486516 - L1MC1 LINE L1 -260 6073 6034 254 175 0 0 chr3 223038098 223038138 -4486440 - L1MC1 LINE L1 -260 6073 6034 254 175 0 0 chr3 223038174 223038214 -4486364 - L1MC1 LINE L1 -260 6073 6034 3582 156 88 2 chr3 223038364 223038991 -4485587 - L1MC1 LINE L1 -260 6073 5393 1940 147 10 13 chr3 223038991 223039290 -4485288 - AluJb SINE Alu -14 298 1 813 154 46 8 chr3 223039290 223039420 -4485158 - AluJo SINE Alu -177 135 1 561 178 31 0 chr3 223039422 223039551 -4485027 - L1MC1 LINE L1 -841 5305 5173 3403 128 106 97 chr3 223039640 223040065 -4484513 + L1MA8 LINE L1 5478 5898 -393 2347 85 0 16 chr3 223040065 223040372 -4484206 + AluY SINE Alu 1 302 -9 3403 128 106 97 chr3 223040372 223040560 -4484018 + L1MA8 LINE L1 5898 6083 -208 1990 143 10 17 chr3 223040560 223040861 -4483717 + AluJb SINE Alu 1 299 -13 3403 128 106 97 chr3 223040861 223041050 -4483528 + L1MA8 LINE L1 6083 6288 -3 2096 123 0 7 chr3 223041151 223041443 -4483135 - AluSq SINE Alu -23 290 1 1922 130 7 24 chr3 223041445 223041737 -4482841 - AluSx SINE Alu -23 289 3 324 58 35 58 chr3 223042440 223042527 -4482051 + (CCCCCA)n Simple_repeat Simple_repeat 6 90 0 181 110 29 88 chr3 223042578 223042714 -4481864 + C-rich Low_complexity Low_complexity 5 132 0 328 160 40 0 chr3 223042785 223042860 -4481718 + CT-rich Low_complexity Low_complexity 1 78 0 1735 171 30 3 chr3 223042871 223043175 -4481403 - AluJb SINE Alu 0 312 1 265 182 0 0 chr3 223043286 223043341 -4481237 - MIR SINE MIR -37 225 171 295 345 31 16 chr3 223043346 223043540 -4481038 - L2 LINE L2 -1365 1949 1753 875 144 0 3 chr3 223043540 223043769 -4480809 + AluSx SINE Alu 2 309 -1 2419 59 7 0 chr3 223043967 223044271 -4480307 + AluYb8 SINE Alu 1 306 -12 2249 102 3 7 chr3 223044462 223044767 -4479811 - AluSg SINE Alu -6 304 1 1072 178 45 0 chr3 223047499 223047701 -4476877 - MER2 DNA MER2_type 0 345 135 885 211 0 17 chr3 223047736 223047911 -4476667 + AluJb SINE Alu 136 307 -5 701 155 14 84 chr3 223047911 223048053 -4476525 - MER2 DNA MER2_type -213 132 1 2267 108 79 15 chr3 223048079 223048421 -4476157 - THE1B LTR MaLR 0 364 1 220 278 56 0 chr3 223048434 223048506 -4476072 - MIR SINE MIR -169 93 18 470 265 203 34 chr3 223048616 223049004 -4475574 + L2 LINE L2 2770 3229 -84 1270 152 47 24 chr3 223049004 223049215 -4475363 + THE1B LTR MaLR 92 307 -57 239 308 15 0 chr3 223049215 223049280 -4475298 + L2 LINE L2 3222 3287 -26 183 225 75 75 chr3 223049300 223049420 -4475158 - MIR SINE MIR -73 189 70 287 263 112 53 chr3 223049831 223049909 -4474669 + MIR SINE MIR 98 170 -92 2132 130 0 7 chr3 223049909 223050210 -4474368 - AluSg SINE Alu -11 299 1 287 263 112 53 chr3 223050210 223050283 -4474295 + MIR SINE MIR 170 258 -4 202 357 51 10 chr3 223050292 223050390 -4474188 - L2 LINE L2 -33 3239 3138 1062 206 29 32 chr3 223050448 223050725 -4473853 + L2 LINE L2 2451 2726 -588 2082 160 87 73 chr3 223050730 223050826 -4473752 + MLT1D LTR MaLR 6 99 -406 2055 118 7 0 chr3 223050826 223051130 -4473448 + AluSg SINE Alu 1 306 0 2082 160 87 73 chr3 223051130 223051473 -4473105 + MLT1D LTR MaLR 99 456 -49 2540 73 0 0 chr3 223051473 223051774 -4472804 - AluY SINE Alu -10 301 1 2082 160 87 73 chr3 223051774 223051825 -4472753 + MLT1D LTR MaLR 456 505 0 899 261 95 12 chr3 223051825 223052359 -4472219 + L2 LINE L2 2722 3302 -11 2246 105 10 0 chr3 223052359 223052654 -4471924 + AluSc SINE Alu 1 298 -11 899 261 95 12 chr3 223052654 223052668 -4471910 + L2 LINE L2 3302 3313 0 522 222 111 63 chr3 223052944 223053065 -4471513 + MIR SINE MIR 32 167 -95 1437 111 65 0 chr3 223053065 223053166 -4471412 + MER30 DNA MER1_type 1 94 -136 210 37 0 0 chr3 223053166 223053193 -4471385 + (TAAA)n Simple_repeat Simple_repeat 1 27 0 1437 111 65 0 chr3 223053193 223053307 -4471271 + MER30 DNA MER1_type 94 230 0 522 222 111 63 chr3 223053307 223053374 -4471204 + MIR SINE MIR 167 229 -33 2377 94 3 0 chr3 223053376 223053674 -4470904 + AluSp SINE Alu 1 299 -14 1624 181 7 20 chr3 223053778 223054081 -4470497 - AluJo SINE Alu -13 299 1 23 0 0 0 chr3 223054092 223054115 -4470463 + AT_rich Low_complexity Low_complexity 1 23 0 804 114 48 18 chr3 223054115 223054282 -4470296 - AluY SINE Alu 0 311 140 2165 107 0 14 chr3 223054385 223054674 -4469904 - AluSx SINE Alu -27 285 1 2514 84 0 0 chr3 223054688 223054999 -4469579 - AluY SINE Alu 0 311 1 2230 112 0 3 chr3 223055001 223055297 -4469281 - AluSc SINE Alu -14 295 1 1707 139 17 44 chr3 223055307 223055602 -4468976 - AluJo SINE Alu -25 287 1 2346 77 7 3 chr3 223055610 223055910 -4468668 - AluY SINE Alu -10 301 1 255 317 69 0 chr3 223055911 223056012 -4468566 + L2 LINE L2 3157 3264 -8 200 283 0 33 chr3 223056054 223056114 -4468464 - MIR3 SINE MIR -24 184 127 357 264 27 9 chr3 223056173 223056283 -4468295 + L2 LINE L2 3186 3297 -16 288 188 196 36 chr3 223056523 223056635 -4467943 + L1ME LINE L1 5492 5621 -500 261 0 0 0 chr3 223056671 223056700 -4467878 + (CA)n Simple_repeat Simple_repeat 2 30 0 399 241 56 0 chr3 223056708 223056816 -4467762 + L1ME LINE L1 5696 5809 -312 23 0 0 0 chr3 223057064 223057087 -4467491 + AT_rich Low_complexity Low_complexity 1 23 0 487 36 0 0 chr3 223057282 223057338 -4467240 + U6 snRNA snRNA 1 56 -51 36 0 0 0 chr3 223057344 223057380 -4467198 + AT_rich Low_complexity Low_complexity 1 36 0 2235 114 10 0 chr3 223057497 223057803 -4466775 + AluSc SINE Alu 1 309 0 2274 85 0 39 chr3 223058789 223059096 -4465482 + AluY SINE Alu 1 295 -16 2347 88 7 0 chr3 223059113 223059409 -4465169 + AluSx SINE Alu 1 298 -14 180 0 0 0 chr3 223060547 223060567 -4464011 + (TA)n Simple_repeat Simple_repeat 2 21 0 2270 99 3 0 chr3 223060650 223060942 -4463636 - AluSp SINE Alu -20 293 1 1074 91 0 0 chr3 223060944 223061076 -4463502 - AluSp SINE Alu -181 132 1 234 234 0 16 chr3 223061078 223061142 -4463436 - MIR SINE MIR -33 229 167 998 100 6 72 chr3 223061145 223061325 -4463253 - MER30 DNA MER1_type 0 230 63 243 179 0 0 chr3 223061766 223061805 -4462773 - L1MC1 LINE L1 -260 6073 6035 227 205 0 0 chr3 223061880 223061919 -4462659 - L1MC1 LINE L1 -260 6073 6035 233 205 0 0 chr3 223062032 223062071 -4462507 - L1MC1 LINE L1 -260 6073 6035 232 200 0 0 chr3 223062325 223062365 -4462213 - L1MC1 LINE L1 -260 6073 6034 231 184 0 0 chr3 223062401 223062439 -4462139 - L1MC1 LINE L1 -260 6073 6036 247 179 0 0 chr3 223062439 223062478 -4462100 - L1MC1 LINE L1 -260 6073 6035 234 179 0 0 chr3 223062781 223062820 -4461758 - L1MC1 LINE L1 -260 6073 6035 238 184 0 0 chr3 223062897 223062935 -4461643 - L1MC1 LINE L1 -262 6071 6034 227 205 0 0 chr3 223063044 223063083 -4461495 - L1MC1 LINE L1 -260 6073 6035 230 219 0 0 chr3 223063610 223063651 -4460927 - L1MC1 LINE L1 -260 6073 6033 236 200 0 0 chr3 223063686 223063726 -4460852 - L1MC1 LINE L1 -260 6073 6034 243 179 0 0 chr3 223064028 223064067 -4460511 - L1MC1 LINE L1 -260 6073 6035 239 200 0 0 chr3 223064256 223064296 -4460282 - L1MC1 LINE L1 -260 6073 6034 239 200 0 0 chr3 223064408 223064448 -4460130 - L1MC1 LINE L1 -260 6073 6034 254 175 0 0 chr3 223064522 223064562 -4460016 - L1MC1 LINE L1 -260 6073 6034 232 179 0 0 chr3 223064674 223064713 -4459865 - L1MC1 LINE L1 -260 6073 6035 239 200 0 0 chr3 223064788 223064828 -4459750 - L1MC1 LINE L1 -260 6073 6034 240 179 0 0 chr3 223064940 223064979 -4459599 - L1MC1 LINE L1 -260 6073 6035 233 200 0 0 chr3 223065054 223065094 -4459484 - L1MC1 LINE L1 -260 6073 6034 243 179 0 0 chr3 223065206 223065245 -4459333 - L1MC1 LINE L1 -260 6073 6035 227 205 0 0 chr3 223065282 223065321 -4459257 - L1MC1 LINE L1 -260 6073 6035 225 184 0 0 chr3 223066114 223066152 -4458426 - L1MC1 LINE L1 -260 6073 6036 240 179 0 0 chr3 223066152 223066191 -4458387 - L1MC1 LINE L1 -260 6073 6035 240 179 0 0 chr3 223066342 223066381 -4458197 - L1MC1 LINE L1 -260 6073 6035 236 200 0 0 chr3 223066456 223066496 -4458082 - L1MC1 LINE L1 -260 6073 6034 254 175 0 0 chr3 223066608 223066648 -4457930 - L1MC1 LINE L1 -260 6073 6034 254 175 0 0 chr3 223066646 223066686 -4457892 - L1MC1 LINE L1 -260 6073 6034 229 200 0 0 chr3 223066798 223066838 -4457740 - L1MC1 LINE L1 -260 6073 6034 254 175 0 0 chr3 223066874 223066914 -4457664 - L1MC1 LINE L1 -260 6073 6034 427 221 3 3 chr3 223067370 223067478 -4457100 + AluJ/FLAM SINE Alu 3 93 -209 1168 150 13 75 chr3 223067480 223067707 -4456871 - AluJb SINE Alu -99 213 1 1622 152 32 4 chr3 223068091 223068368 -4456210 - L1MC1 LINE L1 0 6333 6049 240 185 93 19 chr3 223068415 223068469 -4456109 - L1MC1 LINE L1 -260 6073 6016 229 205 0 0 chr3 223068758 223068797 -4455781 - L1MC1 LINE L1 -260 6073 6035 239 200 0 0 chr3 223068872 223068912 -4455666 - L1MC1 LINE L1 -260 6073 6034 229 225 0 0 chr3 223069024 223069064 -4455514 - L1MC1 LINE L1 -260 6073 6034 243 200 0 0 chr3 223069100 223069140 -4455438 - L1MC1 LINE L1 -260 6073 6034 236 204 93 19 chr3 223069176 223069230 -4455348 - L1MC1 LINE L1 -260 6073 6016 227 205 0 0 chr3 223069252 223069291 -4455287 - L1MC1 LINE L1 -260 6073 6035 238 184 0 0 chr3 223069596 223069634 -4454944 - L1MC1 LINE L1 -262 6071 6034 238 184 0 0 chr3 223069672 223069710 -4454868 - L1MC1 LINE L1 -262 6071 6034 247 179 0 0 chr3 223069822 223069861 -4454717 - L1MC1 LINE L1 -260 6073 6035 229 205 0 0 chr3 223069936 223069975 -4454603 - L1MC1 LINE L1 -260 6073 6035 243 200 0 0 chr3 223070012 223070052 -4454526 - L1MC1 LINE L1 -260 6073 6034 247 179 0 0 chr3 223070127 223070166 -4454412 - L1MC1 LINE L1 -260 6073 6035 239 200 0 0 chr3 223070306 223070346 -4454232 - L1MC1 LINE L1 -260 6073 6034 234 184 0 0 chr3 223070382 223070420 -4454158 - L1MC1 LINE L1 -260 6073 6036 240 179 0 0 chr3 223070420 223070459 -4454119 - L1MC1 LINE L1 -260 6073 6035 234 179 0 0 chr3 223070686 223070725 -4453853 - L1MC1 LINE L1 -260 6073 6035 238 184 0 0 chr3 223070802 223070840 -4453738 - L1MC1 LINE L1 -262 6071 6034 230 200 0 0 chr3 223070876 223070916 -4453662 - L1MC1 LINE L1 -260 6073 6034 243 200 0 0 chr3 223070952 223070992 -4453586 - L1MC1 LINE L1 -260 6073 6034 227 205 0 0 chr3 223071028 223071067 -4453511 - L1MC1 LINE L1 -260 6073 6035 225 205 0 0 chr3 223071104 223071143 -4453435 - L1MC1 LINE L1 -260 6073 6035 240 179 0 0 chr3 223071633 223071672 -4452906 - L1MC1 LINE L1 -260 6073 6035 243 179 0 0 chr3 223071899 223071938 -4452640 - L1MC1 LINE L1 -260 6073 6035 239 200 0 0 chr3 223072165 223072205 -4452373 - L1MC1 LINE L1 -260 6073 6034 239 200 0 0 chr3 223072241 223072281 -4452297 - L1MC1 LINE L1 -260 6073 6034 239 200 0 0 chr3 223072507 223072547 -4452031 - L1MC1 LINE L1 -260 6073 6034 239 200 0 0 chr3 223072659 223072699 -4451879 - L1MC1 LINE L1 -260 6073 6034 244 175 0 0 chr3 223072811 223072851 -4451727 - L1MC1 LINE L1 -260 6073 6034 239 200 0 0 chr3 223072887 223072927 -4451651 - L1MC1 LINE L1 -260 6073 6034 421 247 77 70 chr3 223073219 223073378 -4451200 + L1MC5 LINE L1 7627 7790 -171 2127 120 0 13 chr3 223073378 223073678 -4450900 + AluSx SINE Alu 1 296 -16 421 247 77 70 chr3 223073678 223073777 -4450801 + L1MC5 LINE L1 7790 7887 -74 7510 195 61 34 chr3 223073821 223074385 -4450193 - L1MB7 LINE L1 -1 6183 5636 2211 104 0 32 chr3 223074385 223074693 -4449885 - AluY SINE Alu -13 298 1 7510 195 61 34 chr3 223074693 223075995 -4448583 - L1MB7 LINE L1 -548 5636 4370 1127 178 112 82 chr3 223075995 223076326 -4448252 + MER2 DNA MER2_type 4 344 0 7510 195 61 34 chr3 223076326 223076875 -4447703 - L1MB7 LINE L1 -1814 4370 3837 1712 203 3 0 chr3 223076875 223077175 -4447403 - AluJb SINE Alu -11 301 1 1764 164 20 30 chr3 223077178 223077482 -4447096 - AluJo SINE Alu -11 301 1 7510 195 61 34 chr3 223077482 223077850 -4446728 - L1MB7 LINE L1 -2348 3836 3325 2468 80 0 13 chr3 223078295 223078609 -4445969 - AluSx SINE Alu -2 310 1 1955 163 13 3 chr3 223078647 223078954 -4445624 + AluJo SINE Alu 1 310 -2 818 21 0 0 chr3 223078971 223079064 -4445514 + AluY SINE Alu 217 309 -2 960 296 84 29 chr3 223079624 223080245 -4444333 + L2 LINE L2 2294 2952 -320 387 300 60 25 chr3 223080291 223080491 -4444087 + L1MC4 LINE L1 7365 7571 -471 225 136 45 0 chr3 223080633 223080677 -4443901 + HY1 scRNA scRNA 64 109 -3 370 200 35 0 chr3 223080830 223080915 -4443663 + MLT1D-int LTR MaLR 1284 1371 0 1748 186 98 70 chr3 223080915 223081403 -4443175 + MLT1D LTR MaLR 1 502 -3 1125 176 52 26 chr3 223081403 223081636 -4442942 - Tigger3(Golem) DNA MER2_type 0 3034 2796 1804 174 14 3 chr3 223081636 223081930 -4442648 + AluSx SINE Alu 1 297 -15 201 213 0 0 chr3 223081966 223082013 -4442565 + (CATATA)n Simple_repeat Simple_repeat 3 49 0 267 222 0 0 chr3 223082186 223082267 -4442311 + (TA)n Simple_repeat Simple_repeat 2 82 0 226 253 22 44 chr3 223082268 223082359 -4442219 + L1MC4 LINE L1 6614 6702 -1340 1951 153 50 0 chr3 223082403 223082724 -4441854 + MER7A DNA MER2_type 12 346 0 1820 219 80 49 chr3 223082725 223083114 -4441464 + L1ME2 LINE L1 5424 5842 -322 2171 117 31 0 chr3 223083114 223083405 -4441173 + AluSx SINE Alu 1 300 -12 1820 219 80 49 chr3 223083405 223083663 -4440915 + L1ME2 LINE L1 5842 6091 -73 829 188 5 32 chr3 223083718 223083904 -4440674 - L1M4 LINE L1 -1006 5140 4960 251 214 83 48 chr3 223083894 223084039 -4440539 + L1MC5 LINE L1 7781 7930 -31 * 243 200 0 0 chr3 223084346 223084386 -4440192 - L1MC1 LINE L1 -260 6073 6034 236 204 93 19 chr3 223084422 223084476 -4440102 - L1MC1 LINE L1 -260 6073 6016 227 205 0 0 chr3 223084498 223084537 -4440041 - L1MC1 LINE L1 -260 6073 6035 238 184 0 0 chr3 223084842 223084880 -4439698 - L1MC1 LINE L1 -262 6071 6034 247 179 0 0 chr3 223084992 223085031 -4439547 - L1MC1 LINE L1 -260 6073 6035 243 179 0 0 chr3 223085247 223085286 -4439292 - L1MC1 LINE L1 -260 6073 6035 240 179 0 0 chr3 223085397 223085436 -4439142 - L1MC1 LINE L1 -260 6073 6035 234 179 0 0 chr3 223085663 223085702 -4438876 - L1MC1 LINE L1 -260 6073 6035 238 184 0 0 chr3 223085779 223085817 -4438761 - L1MC1 LINE L1 -262 6071 6034 243 200 0 0 chr3 223085853 223085893 -4438685 - L1MC1 LINE L1 -260 6073 6034 243 200 0 0 chr3 223085929 223085969 -4438609 - L1MC1 LINE L1 -260 6073 6034 227 205 0 0 chr3 223086005 223086044 -4438534 - L1MC1 LINE L1 -260 6073 6035 232 219 0 0 chr3 223086571 223086612 -4437966 - L1MC1 LINE L1 -260 6073 6033 229 205 0 0 chr3 223086913 223086952 -4437626 - L1MC1 LINE L1 -260 6073 6035 226 205 0 0 chr3 223087102 223087141 -4437437 - L1MC1 LINE L1 -260 6073 6035 227 205 0 0 chr3 223087286 223087325 -4437253 - L1MC1 LINE L1 -260 6073 6035 243 179 0 0 chr3 223087362 223087401 -4437177 - L1MC1 LINE L1 -260 6073 6035 225 205 0 0 chr3 223087438 223087477 -4437101 - L1MC1 LINE L1 -260 6073 6035 234 179 0 0 chr3 223087742 223087781 -4436797 - L1MC1 LINE L1 -260 6073 6035 229 205 0 0 chr3 223087932 223087971 -4436607 - L1MC1 LINE L1 -260 6073 6035 243 179 0 0 chr3 223088222 223088261 -4436317 - L1MC1 LINE L1 -260 6073 6035 243 179 0 0 chr3 223088477 223088516 -4436062 - L1MC1 LINE L1 -260 6073 6035 240 179 0 0 chr3 223088551 223088590 -4435988 - L1MC1 LINE L1 -260 6073 6035 243 200 0 0 chr3 223089007 223089047 -4435531 - L1MC1 LINE L1 -260 6073 6034 243 200 0 0 chr3 223089083 223089123 -4435455 - L1MC1 LINE L1 -260 6073 6034 227 205 0 0 chr3 223089159 223089198 -4435380 - L1MC1 LINE L1 -260 6073 6035 227 205 0 0 chr3 223089614 223089653 -4434925 - L1MC1 LINE L1 -260 6073 6035 231 184 0 0 chr3 223089839 223089877 -4434701 - L1MC1 LINE L1 -260 6073 6036 240 179 0 0 chr3 223089877 223089916 -4434662 - L1MC1 LINE L1 -260 6073 6035 243 179 0 0 chr3 223090143 223090182 -4434396 - L1MC1 LINE L1 -260 6073 6035 226 205 0 0 chr3 223090257 223090296 -4434282 - L1MC1 LINE L1 -260 6073 6035 234 184 0 0 chr3 223090702 223090740 -4433838 - L1MC1 LINE L1 -260 6073 6036 240 179 0 0 chr3 223090740 223090779 -4433799 - L1MC1 LINE L1 -260 6073 6035 240 179 0 0 chr3 223090816 223090855 -4433723 - L1MC1 LINE L1 -260 6073 6035 234 205 0 0 chr3 223090854 223090893 -4433685 - L1MC1 LINE L1 -260 6073 6035 * 232 179 0 0 chr3 223091044 223091083 -4433495 - L1MC1 LINE L1 -260 6073 6035 238 184 0 0 chr3 223091160 223091198 -4433380 - L1MC1 LINE L1 -262 6071 6034 243 200 0 0 chr3 223091234 223091274 -4433304 - L1MC1 LINE L1 -260 6073 6034 225 205 0 0 chr3 223091272 223091311 -4433267 - L1MC1 LINE L1 -260 6073 6035 * 243 200 0 0 chr3 223091310 223091350 -4433228 - L1MC1 LINE L1 -260 6073 6034 239 200 0 0 chr3 223091500 223091540 -4433038 - L1MC1 LINE L1 -260 6073 6034 238 204 93 19 chr3 223091576 223091630 -4432948 - L1MC1 LINE L1 -260 6073 6016 239 200 0 0 chr3 223091793 223091833 -4432745 - L1MC1 LINE L1 -260 6073 6034 243 179 0 0 chr3 223091945 223091984 -4432594 - L1MC1 LINE L1 -260 6073 6035 254 175 0 0 chr3 223092021 223092061 -4432517 - L1MC1 LINE L1 -260 6073 6034 228 200 0 0 chr3 223092173 223092213 -4432365 - L1MC1 LINE L1 -260 6073 6034 254 175 0 0 chr3 223092249 223092289 -4432289 - L1MC1 LINE L1 -260 6073 6034 225 225 0 0 chr3 223093454 223093494 -4431084 - L1MC1 LINE L1 -260 6073 6034 243 179 0 0 chr3 223093530 223093569 -4431009 - L1MC1 LINE L1 -260 6073 6035 240 179 0 0 chr3 223093604 223093643 -4430935 - L1MC1 LINE L1 -260 6073 6035 247 179 0 0 chr3 223093756 223093795 -4430783 - L1MC1 LINE L1 -260 6073 6035 1706 155 97 33 chr3 223094010 223094371 -4430207 + MLT1B LTR MaLR 7 390 0 656 289 75 57 chr3 223094379 223094833 -4429745 + LTR67 LTR ERVL 33 494 -63 2185 109 14 0 chr3 223094847 223095140 -4429438 + AluSc SINE Alu 2 298 -11 872 148 0 0 chr3 223095149 223095292 -4429286 + FLAM_C SINE Alu 2 144 0 1601 214 115 22 chr3 223095297 223095713 -4428865 - L1ME1 LINE L1 -5 6161 5707 335 242 42 11 chr3 223095713 223095808 -4428770 + LTR67 LTR ERVL 456 553 -4 2190 134 0 0 chr3 223095976 223096281 -4428297 - AluSx SINE Alu -7 305 1 263 331 29 40 chr3 223096334 223096509 -4428069 - L2 LINE L2 -670 2644 2472 278 250 13 13 chr3 223096835 223096911 -4427667 - L2 LINE L2 -5 3308 3233 262 215 43 108 chr3 223097221 223097253 -4427325 - L2 LINE L2 0 3313 3281 1977 132 27 144 chr3 223097253 223097461 -4427117 + MSTC LTR MaLR 1 121 -307 1493 202 18 0 chr3 223097461 223097588 -4426990 + AluJo SINE Alu 1 124 -188 1990 138 7 3 chr3 223097588 223097893 -4426685 + AluSx SINE Alu 1 306 -6 1493 202 18 0 chr3 223097893 223098047 -4426531 + AluJo SINE Alu 124 287 -25 1977 132 27 144 chr3 223098047 223098323 -4426255 + MSTC LTR MaLR 121 428 0 262 215 43 108 chr3 223098323 223098383 -4426195 - L2 LINE L2 -32 3281 3227 271 369 46 0 chr3 223098515 223098645 -4425933 - L2 LINE L2 -222 3050 2915 249 315 56 52 chr3 223099106 223099357 -4425221 - L2 LINE L2 -1335 1979 1728 289 309 119 32 chr3 223099842 223100185 -4424393 - L2 LINE L2 -1656 1658 1286 2400 82 0 0 chr3 223100219 223100513 -4424065 + AluSq SINE Alu 6 299 -14 1271 192 28 8 chr3 223100659 223100909 -4423669 + AluJb SINE Alu 1 255 -57 231 286 0 0 chr3 223100909 223100958 -4423620 + L2 LINE L2 2707 2755 -559 189 94 0 0 chr3 223101422 223101454 -4423124 + (TTAA)n Simple_repeat Simple_repeat 3 34 0 2414 48 0 10 chr3 223101454 223101740 -4422838 - AluY SINE Alu -26 285 1 363 279 58 0 chr3 223101801 223101905 -4422673 + L2 LINE L2 2697 2806 -508 2149 107 4 0 chr3 223102301 223102604 -4421974 - AluSx SINE Alu 0 304 1 2310 102 0 7 chr3 223102604 223102908 -4421670 - AluSq SINE Alu -11 302 1 244 254 32 0 chr3 223102909 223102972 -4421606 + L2 LINE L2 3248 3312 -1 2380 106 0 0 chr3 223103346 223103657 -4420921 + AluSq SINE Alu 1 311 -2 553 245 236 9 chr3 223103675 223103891 -4420687 + Charlie8 DNA MER1_type 1 265 -2152 247 261 46 124 chr3 223104224 223104377 -4420201 - L2 LINE L2 -2820 494 354 1374 118 0 0 chr3 223104772 223104950 -4419628 + AluSg/x SINE Alu 118 295 -15 400 273 28 123 chr3 223104969 223105295 -4419283 + HsTC2 DNA Tc2 4 298 -1600 * 590 268 110 68 chr3 223105278 223105576 -4419002 + HsTC2 DNA Tc2 468 789 -1109 1747 153 29 36 chr3 223105576 223105883 -4418695 - AluJb SINE Alu -3 309 5 590 268 110 68 chr3 223105883 223105994 -4418584 + HsTC2 DNA Tc2 789 894 -1004 668 146 10 0 chr3 223106010 223106106 -4418472 + AluJ/FLAM SINE Alu 2 98 -214 198 229 83 0 chr3 223106222 223106270 -4418308 - MIR SINE MIR -3 259 208 280 290 14 0 chr3 223106307 223106376 -4418202 - MIR SINE MIR -187 75 6 22 0 0 0 chr3 223109292 223109314 -4415264 + AT_rich Low_complexity Low_complexity 1 22 0 2214 129 7 0 chr3 223110516 223110826 -4413752 + AluSx SINE Alu 1 312 0 1730 136 70 28 chr3 223110964 223111251 -4413327 + AluJo SINE Alu 1 299 -13 2286 101 0 3 chr3 223111367 223111665 -4412913 - AluSq SINE Alu -16 297 1 711 212 8 0 chr3 223111734 223111852 -4412726 - FLAM_A SINE Alu -13 120 2 3316 205 40 56 chr3 223112495 223112669 -4411909 + L1M4 LINE L1 2213 2388 -3758 1845 143 7 23 chr3 223112669 223112969 -4411609 + AluJb SINE Alu 1 295 -17 3316 205 40 56 chr3 223112969 223113637 -4410941 + L1M4 LINE L1 2388 3041 -3105 2179 96 25 0 chr3 223113637 223113919 -4410659 + AluSg SINE Alu 1 289 -21 3316 205 40 56 chr3 223113919 223114027 -4410551 + L1M4 LINE L1 3041 3149 -2997 226 205 0 0 chr3 223114137 223114176 -4410402 + L1MC1 LINE L1 6035 6073 -260 228 205 0 0 chr3 223114289 223114328 -4410250 + L1MC1 LINE L1 6035 6073 -260 239 200 0 0 chr3 223114478 223114518 -4410060 + L1MC1 LINE L1 6034 6073 -260 239 200 0 0 chr3 223114660 223114700 -4409878 + L1MC1 LINE L1 6034 6073 -260 239 200 0 0 chr3 223114812 223114852 -4409726 + L1MC1 LINE L1 6034 6073 -260 229 186 23 0 chr3 223114889 223114932 -4409646 + L1MC1 LINE L1 6035 6078 -255 254 175 0 0 chr3 223115002 223115042 -4409536 + L1MC1 LINE L1 6034 6073 -260 239 200 0 0 chr3 223115116 223115156 -4409422 + L1MC1 LINE L1 6034 6073 -260 239 200 0 0 chr3 223115268 223115308 -4409270 + L1MC1 LINE L1 6034 6073 -260 239 200 0 0 chr3 223115534 223115574 -4409004 + L1MC1 LINE L1 6034 6073 -260 239 200 0 0 chr3 223115800 223115840 -4408738 + L1MC1 LINE L1 6034 6073 -260 246 175 0 0 chr3 223115876 223115916 -4408662 + L1MC1 LINE L1 6034 6073 -260 239 200 0 0 chr3 223116028 223116068 -4408510 + L1MC1 LINE L1 6034 6073 -260 225 205 0 0 chr3 223116447 223116486 -4408092 + L1MC1 LINE L1 6035 6073 -260 232 200 0 0 chr3 223116598 223116638 -4407940 + L1MC1 LINE L1 6034 6073 -260 240 179 0 0 chr3 223116713 223116752 -4407826 + L1MC1 LINE L1 6035 6073 -260 239 200 0 0 chr3 223117128 223117168 -4407410 + L1MC1 LINE L1 6034 6073 -260 239 200 0 0 chr3 223117318 223117358 -4407220 + L1MC1 LINE L1 6034 6073 -260 239 200 0 0 chr3 223117470 223117510 -4407068 + L1MC1 LINE L1 6034 6073 -260 254 175 0 0 chr3 223117660 223117700 -4406878 + L1MC1 LINE L1 6034 6073 -260 409 226 0 0 chr3 223117838 223117922 -4406656 + AluSg/x SINE Alu 197 280 -30 306 0 0 0 chr3 223117935 223117969 -4406609 + (TA)n Simple_repeat Simple_repeat 1 34 0 284 0 28 0 chr3 223117968 223118004 -4406574 + (CA)n Simple_repeat Simple_repeat 2 38 0 * 248 221 419 7 chr3 223118008 223118144 -4406434 - MIR SINE MIR -42 220 29 725 266 0 6 chr3 223118200 223118358 -4406220 + MER45A DNA AcHobo 11 167 -11 1077 148 128 5 chr3 223118381 223118584 -4405994 + MER58B DNA MER1_type 78 305 -36 2307 106 3 0 chr3 223118586 223118889 -4405689 - AluSq SINE Alu -9 304 1 325 276 46 78 chr3 223118919 223119136 -4405442 - L1MC4 LINE L1 -40 8002 7793 181 352 80 16 chr3 223119387 223119512 -4405066 - L2 LINE L2 -473 2841 2709 1131 150 56 38 chr3 223119538 223119751 -4404827 + AluJo SINE Alu 87 303 -9 480 288 133 0 chr3 223119878 223120111 -4404467 + L1MC5 LINE L1 7639 7902 -59 591 255 25 43 chr3 223120920 223121081 -4403497 + MER5B DNA MER1_type 21 178 0 2130 115 10 3 chr3 223121286 223121582 -4402996 + AluSx SINE Alu 1 298 -14 2450 62 16 7 chr3 223121587 223121895 -4402683 + AluY SINE Alu 1 311 0 317 305 158 41 chr3 223122006 223122635 -4401943 + L1M4 LINE L1 4377 5112 -1034 790 101 18 0 chr3 223122683 223122792 -4401786 + HY1 scRNA scRNA 1 111 -1 1366 143 40 28 chr3 223122903 223123155 -4401423 + L1MB8 LINE L1 5914 6168 -10 1417 164 7 30 chr3 223123499 223123768 -4400810 + AluJo SINE Alu 1 263 -49 645 293 116 74 chr3 223123824 223124276 -4400302 - L2 LINE L2 -50 3222 2791 1853 160 28 3 chr3 223124276 223124564 -4400014 - AluJo SINE Alu -17 295 1 645 293 116 74 chr3 223124564 223124997 -4399581 - L2 LINE L2 -481 2791 2235 1373 167 26 72 chr3 223124998 223125304 -4399274 + AluJo SINE Alu 1 292 -20 756 259 47 43 chr3 223125682 223125871 -4398707 - L1ME LINE L1 -577 5585 5398 2116 100 10 3 chr3 223125871 223126160 -4398418 - AluSc SINE Alu -14 295 5 756 259 47 43 chr3 223126160 223126366 -4398212 - L1ME LINE L1 -764 5398 5175 21 57 0 0 chr3 223126444 223126479 -4398099 + AT_rich Low_complexity Low_complexity 1 35 0 3308 153 118 74 chr3 223126637 223126655 -4397923 - L1MC1 LINE L1 0 6333 6317 2217 92 10 3 chr3 223126655 223126948 -4397630 + AluSc SINE Alu 1 295 -14 3308 153 118 74 chr3 223126948 223127375 -4397203 - L1MC1 LINE L1 -16 6317 5910 1335 178 22 0 chr3 223127375 223127606 -4396972 - MER46A DNA MER2_type 0 236 1 3308 153 118 74 chr3 223127606 223127823 -4396755 - L1MC1 LINE L1 -423 5910 5704 816 208 0 0 chr3 223127823 223127953 -4396625 + FLAM_C SINE Alu 2 131 -12 3308 153 118 74 chr3 223127953 223128205 -4396373 - L1MC1 LINE L1 -629 5704 5355 1166 160 0 16 chr3 223128223 223128417 -4396161 - AluJo SINE Alu 0 312 122 466 108 34 129 chr3 223128417 223128456 -4396122 - L1M LINE L1 -814 5332 5291 1939 133 7 13 chr3 223128456 223128764 -4395814 - AluSx SINE Alu -6 306 1 466 108 34 129 chr3 223128764 223128906 -4395672 - L1M LINE L1 -855 5291 5198 470 314 113 13 chr3 223129191 223129420 -4395158 + L2 LINE L2 3061 3312 -1 1950 97 9 97 chr3 223129605 223129934 -4394644 - AluSx SINE Alu -12 300 1 842 158 0 43 chr3 223130045 223130184 -4394394 - AluJo SINE Alu -169 133 1 861 124 0 90 chr3 223130319 223130464 -4394114 - FLAM_C SINE Alu -1 132 1 537 136 0 11 chr3 223130685 223130773 -4393805 - L1MB3 LINE L1 -7 6176 6090 2829 198 29 12 chr3 223130788 223131139 -4393439 - L1MB3 LINE L1 -382 5801 5457 1817 153 24 68 chr3 223131139 223131519 -4393059 - MLT1A1 LTR MaLR -2 363 1 2829 198 29 12 chr3 223131519 223131965 -4392613 - L1MB3 LINE L1 -726 5457 4985 865 145 21 7 chr3 223132065 223132210 -4392368 - MLT1A1 LTR MaLR -218 147 1 9191 204 36 25 chr3 223132210 223133005 -4391573 - L1M3 LINE L1 -734 5449 4664 2356 108 0 9 chr3 223133005 223133321 -4391257 - AluSq SINE Alu 0 313 1 9191 204 36 25 chr3 223133321 223134434 -4390144 - L1M3 LINE L1 -1519 4664 3564 1750 179 0 7 chr3 223134434 223134735 -4389843 - AluJb SINE Alu -13 299 1 9191 204 36 25 chr3 223134735 223135203 -4389375 - L1M3 LINE L1 -2619 3564 3042 1600 193 35 0 chr3 223135203 223135488 -4389090 - AluJb SINE Alu -15 297 3 9191 204 36 25 chr3 223135488 223135526 -4389052 - L1M3 LINE L1 -3141 3042 3006 21 0 0 0 chr3 223135545 223135566 -4389012 + AT_rich Low_complexity Low_complexity 1 21 0 816 183 0 8 chr3 223135574 223135700 -4388878 - FLAM_C SINE Alu -18 125 1 411 182 0 0 chr3 223136295 223136361 -4388217 + AluJ/FLAM SINE Alu 14 79 -233 2501 119 68 31 chr3 223136843 223137214 -4387364 + MSTA LTR MaLR 1 390 -38 2346 95 0 3 chr3 223137214 223137509 -4387069 - AluSg SINE Alu -16 294 1 2501 119 68 31 chr3 223137509 223137550 -4387028 + MSTA LTR MaLR 390 428 0 2222 105 3 10 chr3 223137814 223138118 -4386460 + AluSx SINE Alu 1 302 -10 330 236 14 7 chr3 223138119 223138259 -4386319 + (TA)n Simple_repeat Simple_repeat 2 142 0 538 190 66 22 chr3 223138603 223138740 -4385838 + L2 LINE L2 1916 2058 -1256 692 152 0 0 chr3 223138755 223138854 -4385724 - AluJ/FLAM SINE Alu -212 100 2 2313 298 78 42 chr3 223138855 223140024 -4384554 + L2 LINE L2 2040 3253 -60 1887 145 10 7 chr3 223141234 223141531 -4383047 - AluSx SINE Alu -14 298 1 665 202 0 24 chr3 223141877 223142001 -4382577 - FLAM_C SINE Alu -22 121 2 240 163 0 0 chr3 223142670 223142713 -4381865 + (CATATA)n Simple_repeat Simple_repeat 4 46 0 2342 95 3 0 chr3 223142713 223143017 -4381561 - AluSp SINE Alu -8 305 1 28 0 0 0 chr3 223143048 223143076 -4381502 + AT_rich Low_complexity Low_complexity 1 28 0 737 149 0 95 chr3 223143430 223143578 -4381000 + AluJo SINE Alu 1 134 -178 303 47 0 0 chr3 223143843 223143886 -4380692 - MADE1 DNA Mariner -37 43 1 212 342 217 0 chr3 223143913 223144065 -4380513 - MIR3 SINE MIR -9 199 15 1988 113 29 0 chr3 223144232 223144551 -4380027 - AluSp SINE Alu 0 327 1 245 88 0 0 chr3 223144594 223144628 -4379950 + U2 snRNA snRNA 2 35 -153 317 265 154 37 chr3 223145132 223145294 -4379284 - MIR SINE MIR -41 221 41 25 31 0 0 chr3 223145962 223145994 -4378584 + AT_rich Low_complexity Low_complexity 1 32 0 2433 97 3 0 chr3 223146099 223146409 -4378169 - AluSx SINE Alu -1 311 1 2282 112 0 0 chr3 223146642 223146946 -4377632 - AluSq SINE Alu -9 304 1 1359 235 30 3 chr3 223147192 223147520 -4377058 - MER58B DNA MER1_type -4 337 1 24 85 0 0 chr3 223147615 223147674 -4376904 + AT_rich Low_complexity Low_complexity 1 59 0 21 0 0 0 chr3 223147976 223147997 -4376581 + AT_rich Low_complexity Low_complexity 1 21 0 937 173 8 123 chr3 223147997 223148240 -4376338 - AluJo SINE Alu -30 282 68 724 174 0 0 chr3 223148248 223148380 -4376198 - FLAM_C SINE Alu 0 133 2 292 286 32 48 chr3 223148978 223149167 -4375411 - L1ME4a LINE L1 -198 5923 5738 1508 149 114 0 chr3 223149592 223149854 -4374724 - AluJo SINE Alu -14 298 7 2282 101 3 3 chr3 223150906 223151202 -4373376 - AluSx SINE Alu -16 296 1 553 250 66 7 chr3 223151216 223151352 -4373226 - MIR SINE MIR -91 171 28 2274 108 16 3 chr3 223151389 223151695 -4372883 + AluSp SINE Alu 1 310 -3 23 54 0 0 chr3 223152118 223152155 -4372423 + AT_rich Low_complexity Low_complexity 1 37 0 369 195 47 16 chr3 223152247 223152351 -4372227 - MER5A DNA MER1_type -77 112 4 444 270 24 68 chr3 223152530 223152703 -4371875 - MIR SINE MIR -50 212 52 2128 101 3 7 chr3 223152703 223153001 -4371577 - AluSx SINE Alu -15 297 1 444 270 24 68 chr3 223153001 223153045 -4371533 - MIR SINE MIR -210 52 8 22 0 0 0 chr3 223153127 223153149 -4371429 + AT_rich Low_complexity Low_complexity 1 22 0 200 33 0 33 chr3 223153208 223153238 -4371340 + (TTTTA)n Simple_repeat Simple_repeat 2 30 0 2261 100 0 25 chr3 223153856 223154175 -4370403 - AluSx SINE Alu -1 311 1 1196 242 20 0 chr3 223154848 223155096 -4369482 + MIR SINE MIR 3 255 -7 180 238 71 0 chr3 223155097 223155139 -4369439 + L2 LINE L2 3138 3182 -90 1137 108 7 0 chr3 223155159 223155307 -4369271 + AluSq/x SINE Alu 1 149 -164 417 113 0 0 chr3 223155329 223155391 -4369187 + Alu SINE Alu 238 299 -13 299 279 0 0 chr3 223155554 223155622 -4368956 + L2 LINE L2 3201 3268 -4 2698 53 31 6 chr3 223156099 223156457 -4368121 - L1PA8 LINE L1 0 6172 5806 2468 148 31 0 chr3 223156513 223156965 -4367613 - L1MB7 LINE L1 -20 6164 5699 648 132 58 50 chr3 223157650 223157771 -4366807 - FLAM_C SINE Alu -10 133 12 250 372 42 23 chr3 223157773 223157988 -4366590 - MIR SINE MIR -43 219 1 2149 125 7 0 chr3 223158173 223158468 -4366110 - AluSx SINE Alu -15 297 1 1141 294 72 18 chr3 223158550 223159104 -4365474 - L1MC4a LINE L1 -1908 5900 5317 662 304 125 35 chr3 223159145 223159737 -4364841 - L1MC4a LINE L1 -872 5274 4630 304 232 91 20 chr3 223159857 223159956 -4364622 - MER103 DNA DNA 0 166 61 191 111 0 28 chr3 223160363 223160399 -4364179 + (GGAA)n Simple_repeat Simple_repeat 3 37 0 251 206 44 15 chr3 223160411 223160479 -4364099 + GA-rich Low_complexity Low_complexity 4 73 0 2360 104 0 0 chr3 223160783 223161090 -4363488 - AluSq SINE Alu -6 307 1 2095 119 0 0 chr3 223161460 223161746 -4362832 + AluSx SINE Alu 19 304 -8 485 257 104 59 chr3 223161896 223162339 -4362239 - MLT1H LTR MaLR -4 545 83 323 285 100 23 chr3 223162432 223162562 -4362016 - MER5B DNA MER1_type -37 141 2 1058 185 11 0 chr3 223162580 223162764 -4361814 + MER5A DNA MER1_type 4 189 0 636 233 19 13 chr3 223162857 223163016 -4361562 + MER58B DNA MER1_type 176 335 -6 445 250 0 10 chr3 223163171 223163275 -4361303 + MER5B DNA MER1_type 76 178 0 305 277 134 17 chr3 223163293 223163412 -4361166 - MER5A DNA MER1_type -30 159 27 363 217 208 0 chr3 223163413 223163533 -4361045 - MER5B DNA MER1_type -33 145 1 2234 112 0 13 chr3 223163747 223164051 -4360527 + AluSx SINE Alu 1 300 -12 434 151 27 0 chr3 223164312 223164385 -4360193 - AluJ/FRAM SINE Alu -16 296 222 796 181 6 30 chr3 223164468 223164481 -4360097 - AluSg/x SINE Alu -14 298 286 4856 119 38 11 chr3 223164481 223165294 -4359284 - L1MA3 LINE L1 -5 6300 5466 207 0 0 0 chr3 223165299 223165322 -4359256 + (TTTA)n Simple_repeat Simple_repeat 2 24 0 796 181 6 30 chr3 223165322 223165468 -4359110 - AluSg/x SINE Alu -30 282 137 10075 157 51 80 chr3 223165469 223166245 -4358333 - L1MA3 LINE L1 -743 5403 4606 249 33 0 0 chr3 223166245 223166275 -4358303 + (TG)n Simple_repeat Simple_repeat 1 30 0 10075 157 51 80 chr3 223166275 223166354 -4358224 - L1MA3 LINE L1 -1540 4606 4526 1384 101 6 0 chr3 223166354 223166532 -4358046 - AluSp SINE Alu -134 179 1 10075 157 51 80 chr3 223166532 223167556 -4357022 - L1MA3 LINE L1 -1620 4526 3474 2342 85 0 13 chr3 223167556 223167862 -4356716 - AluSq SINE Alu -11 302 1 10075 157 51 80 chr3 223167862 223168429 -4356149 - L1MA3 LINE L1 -2672 3474 2892 2207 138 0 3 chr3 223168429 223168740 -4355838 - AluSx SINE Alu -2 310 1 10075 157 51 80 chr3 223168740 223169064 -4355514 - L1MA3 LINE L1 -3254 2892 2629 2241 115 6 13 chr3 223169064 223169378 -4355200 - AluSx SINE Alu 0 312 1 10075 157 51 80 chr3 223169378 223169526 -4355052 - L1MA3 LINE L1 -3517 2629 2478 201 94 0 0 chr3 223171232 223171264 -4353314 + (TG)n Simple_repeat Simple_repeat 1 32 0 2038 128 2 28 chr3 223171886 223172277 -4352301 - L1M3 LINE L1 -469 5705 5305 1633 191 3 36 chr3 223172277 223172581 -4351997 - AluJo SINE Alu -18 294 1 2038 128 2 28 chr3 223172581 223172608 -4351970 - L1M3 LINE L1 -869 5305 5279 234 0 0 0 chr3 223172608 223172634 -4351944 + (TTG)n Simple_repeat Simple_repeat 1 26 0 2038 128 2 28 chr3 223172634 223172920 -4351658 - L1M3 LINE L1 -895 5279 5010 2135 127 0 0 chr3 223173215 223173514 -4351064 - AluSx SINE Alu -13 299 1 2333 90 0 3 chr3 223173572 223173882 -4350696 - AluSc SINE Alu 0 309 1 344 86 0 35 chr3 223173979 223174037 -4350541 + (TCCC)n Simple_repeat Simple_repeat 3 58 0 233 262 0 0 chr3 223174633 223174648 -4349930 + MIR3 SINE MIR 102 116 -92 2048 161 0 0 chr3 223174648 223174952 -4349626 + AluJb SINE Alu 1 304 -8 233 262 0 0 chr3 223174952 223174997 -4349581 + MIR3 SINE MIR 115 162 -46 21 0 0 0 chr3 223175003 223175024 -4349554 + AT_rich Low_complexity Low_complexity 1 21 0 722 159 0 0 chr3 223175523 223175649 -4348929 - AluSg/x SINE Alu -5 307 182 1971 128 21 0 chr3 223175697 223175979 -4348599 - AluSx SINE Alu -24 288 1 1848 148 28 14 chr3 223176278 223176561 -4348017 - AluJo SINE Alu -25 287 1 2229 114 7 0 chr3 223176873 223177180 -4347398 - AluSx SINE Alu -3 309 1 838 73 0 0 chr3 223177250 223177384 -4347194 + AluY SINE Alu 175 308 0 1860 113 4 14 chr3 223177689 223177964 -4346614 - AluSx SINE Alu -18 294 23 1938 129 32 0 chr3 223178162 223178441 -4346137 - AluSx SINE Alu -23 289 2 28 0 0 0 chr3 223178835 223178863 -4345715 + AT_rich Low_complexity Low_complexity 1 28 0 449 147 80 0 chr3 223178863 223178938 -4345640 - AluJ/FLAM SINE Alu -231 81 1 261 0 0 0 chr3 223179074 223179103 -4345475 + (T)n Simple_repeat Simple_repeat 1 29 0 1822 140 17 30 chr3 223179355 223179655 -4344923 + AluSx SINE Alu 1 296 -16 6287 153 24 14 chr3 223179658 223180341 -4344237 + L1P4 LINE L1 4052 4727 -1434 2207 119 3 7 chr3 223180341 223180644 -4343934 - AluSq SINE Alu -11 302 1 6287 153 24 14 chr3 223180644 223181687 -4342891 + L1P4 LINE L1 4727 5788 -373 18071 161 50 15 chr3 223181788 223182396 -4342182 - L1 LINE L1 -3660 3905 3320 2477 59 0 0 chr3 223182396 223182699 -4341879 + AluY SINE Alu 1 303 -8 18071 161 50 15 chr3 223182699 223184052 -4340526 - L1 LINE L1 -4245 3320 2015 1976 141 26 35 chr3 223184052 223184429 -4340149 + THE1C LTR MaLR 1 374 -1 18071 161 50 15 chr3 223184429 223186226 -4338352 - L1 LINE L1 -5550 2015 15 222 118 0 0 chr3 223186864 223186898 -4337680 + (A)n Simple_repeat Simple_repeat 1 34 0 1619 171 66 4 chr3 223187017 223187291 -4337287 + AluSx SINE Alu 1 291 -21 1472 133 43 5 chr3 223187391 223187786 -4336792 + L1PA12 LINE L1 5052 5458 -710 3840 78 19 9 chr3 223187795 223188330 -4336248 + L1PA12 LINE L1 5629 6168 0 480 244 137 60 chr3 223188400 223188786 -4335792 - L1ME1 LINE L1 -5 6161 5746 777 184 20 0 chr3 223188787 223188934 -4335644 - MLT1F1 LTR MaLR 0 542 393 * 900 202 12 132 chr3 223188932 223189064 -4335514 - MLT1F1 LTR MaLR -279 288 217 2036 118 4 0 chr3 223189064 223189336 -4335242 - AluSx SINE Alu -11 301 29 900 202 12 132 chr3 223189336 223189530 -4335048 - MLT1F1 LTR MaLR -350 217 1 394 257 26 13 chr3 223189530 223189682 -4334896 - L1ME1 LINE L1 -412 5752 5599 31 44 0 0 chr3 223189736 223189781 -4334797 + AT_rich Low_complexity Low_complexity 1 45 0 1978 171 30 3 chr3 223189781 223190120 -4334458 - MER7A DNA MER2_type 0 346 1 1515 205 160 37 chr3 223190177 223190400 -4334178 - L1ME1 LINE L1 -592 5574 5380 2011 97 17 10 chr3 223190400 223190676 -4333902 + AluY SINE Alu 1 281 -30 405 0 0 0 chr3 223190676 223190721 -4333857 + (CA)n Simple_repeat Simple_repeat 1 45 0 2011 97 17 10 chr3 223190721 223190734 -4333844 + AluY SINE Alu 281 292 -19 1515 205 160 37 chr3 223190734 223190746 -4333832 - L1ME1 LINE L1 -786 5380 5371 2157 100 3 20 chr3 223190746 223191045 -4333533 + AluSx SINE Alu 1 294 -18 1515 205 160 37 chr3 223191045 223191493 -4333085 - L1ME1 LINE L1 -795 5371 4980 1595 172 55 10 chr3 223191493 223191783 -4332795 - AluJb SINE Alu -7 305 3 1515 205 160 37 chr3 223191783 223192054 -4332524 - L1ME1 LINE L1 -1186 4980 4511 2094 232 59 23 chr3 223192525 223192660 -4331918 - L1ME1 LINE L1 -1623 4523 4394 2212 86 7 3 chr3 223192660 223192962 -4331616 - AluSp SINE Alu -10 303 1 2094 232 59 23 chr3 223192962 223193525 -4331053 - L1ME1 LINE L1 -1752 4394 3800 27 49 0 0 chr3 223193641 223193682 -4330896 + AT_rich Low_complexity Low_complexity 1 41 0 1616 197 3 31 chr3 223193961 223194281 -4330297 - AluJo SINE Alu -1 311 1 993 253 25 47 chr3 223194294 223194658 -4329920 - L1ME2 LINE L1 -10 6154 5799 1505 244 124 16 chr3 223194884 223195392 -4329186 - L1ME1 LINE L1 -18 6148 5586 644 269 54 23 chr3 223195432 223195785 -4328793 - L1ME1 LINE L1 -2686 3460 3097 21 36 0 0 chr3 223196999 223197027 -4327551 + AT_rich Low_complexity Low_complexity 1 28 0 2159 73 28 3 chr3 223197187 223197476 -4327102 + AluSp SINE Alu 1 296 -17 22 35 0 0 chr3 223197638 223197667 -4326911 + AT_rich Low_complexity Low_complexity 1 29 0 1401 192 3 59 chr3 223197754 223198061 -4326517 - AluJo SINE Alu -2 310 21 820 174 37 19 chr3 223198368 223198529 -4326049 + AluJo SINE Alu 85 248 -64 340 335 16 63 chr3 223198543 223198734 -4325844 + MER5A DNA MER1_type 4 185 -4 2311 95 0 7 chr3 223198997 223199293 -4325285 - AluSc SINE Alu -15 294 1 326 274 156 38 chr3 223199726 223199853 -4324725 - L1ME4a LINE L1 -223 5898 5787 1923 153 3 6 chr3 223199853 223200180 -4324398 - L1PB3 LINE L1 0 6154 5829 326 274 156 38 chr3 223200180 223200289 -4324289 - L1ME4a LINE L1 -334 5787 5634 2553 50 3 0 chr3 223200384 223200685 -4323893 + AluY SINE Alu 1 302 -9 25 31 0 0 chr3 223202056 223202088 -4322490 + AT_rich Low_complexity Low_complexity 1 32 0 245 271 43 0 chr3 223202098 223202168 -4322410 + L2 LINE L2 3199 3271 -1 56 55 0 0 chr3 223202488 223202579 -4321999 + AT_rich Low_complexity Low_complexity 1 91 0 2293 108 0 0 chr3 223202752 223203058 -4321520 - AluSx SINE Alu -6 306 1 1600 125 6 113 chr3 223203387 223203715 -4320863 + AluJo SINE Alu 1 293 -19 544 254 164 85 chr3 223203719 223204261 -4320317 - L2 LINE L2 -1 3312 2647 2166 110 7 0 chr3 223204261 223204561 -4320017 + AluSp SINE Alu 1 302 -11 544 254 164 85 chr3 223204561 223204759 -4319819 - L2 LINE L2 -666 2647 2466 2436 80 0 10 chr3 223205998 223206309 -4318269 + AluSq SINE Alu 1 308 -5 699 259 134 89 chr3 223206576 223206906 -4317672 - L1ME4a LINE L1 -19 6102 5788 1332 238 40 3 chr3 223206906 223207230 -4317348 - MER58B DNA MER1_type -1 340 5 699 259 134 89 chr3 223207230 223207685 -4316893 - L1ME4a LINE L1 -333 5788 5282 261 167 115 13 chr3 223207851 223207929 -4316649 - L1MB7 LINE L1 -54 6130 6045 21 71 0 0 chr3 223208606 223208648 -4315930 + AT_rich Low_complexity Low_complexity 1 42 0 1642 176 3 35 chr3 223208701 223208991 -4315587 + AluJb SINE Alu 1 281 -31 25 31 0 0 chr3 223208991 223209023 -4315555 + AT_rich Low_complexity Low_complexity 1 32 0 2078 130 24 29 chr3 223209252 223209629 -4314949 - THE1C LTR MaLR 0 375 1 2431 71 0 0 chr3 223210050 223210347 -4314231 - AluY SINE Alu -12 299 3 1903 130 67 0 chr3 223210590 223210874 -4313704 + AluSx SINE Alu 2 304 -8 352 206 76 0 chr3 223211102 223211194 -4313384 - MLT1J LTR MaLR 0 511 413 1249 285 40 0 chr3 223211250 223211552 -4313026 - MLT1J LTR MaLR -197 314 1 207 340 142 9 chr3 223211866 223211972 -4312606 - L2 LINE L2 -652 2662 2543 180 276 254 22 chr3 223211987 223212168 -4312410 - L2 LINE L2 -930 2384 2162 436 318 121 25 chr3 223212358 223212846 -4311732 - L2 LINE L2 -1254 2060 1526 2506 70 0 3 chr3 223213092 223213404 -4311174 - AluY SINE Alu 0 311 1 25 51 0 0 chr3 223213888 223213927 -4310651 + AT_rich Low_complexity Low_complexity 1 39 0 27 29 0 0 chr3 223214230 223214264 -4310314 + AT_rich Low_complexity Low_complexity 1 34 0 1912 125 0 4 chr3 223214275 223214554 -4310024 - AluSg SINE Alu -32 278 1 242 200 0 0 chr3 223216349 223216409 -4308169 - L1MA8 LINE L1 0 6291 6232 21 36 0 0 chr3 223216634 223216662 -4307916 + AT_rich Low_complexity Low_complexity 1 28 0 243 0 0 0 chr3 223216762 223216789 -4307789 + (A)n Simple_repeat Simple_repeat 1 27 0 633 278 96 47 chr3 223216880 223217265 -4307313 - L1ME LINE L1 -458 5706 5303 394 284 122 73 chr3 223217303 223217440 -4307138 - L1ME LINE L1 -983 5163 5034 216 0 0 0 chr3 223217440 223217464 -4307114 + (TTTTA)n Simple_repeat Simple_repeat 2 25 0 2013 103 0 0 chr3 223217468 223217729 -4306849 - AluSx SINE Alu -46 266 6 394 284 122 73 chr3 223217729 223218142 -4306436 - L1ME LINE L1 -1114 5032 4641 2655 84 22 15 chr3 223218142 223218545 -4306033 - L1MA2 LINE L1 0 6304 5899 394 284 122 73 chr3 223218545 223219113 -4305465 - L1ME LINE L1 -1505 4641 4037 2226 120 3 0 chr3 223220332 223220632 -4303946 + AluSx SINE Alu 3 303 -9 1980 129 32 0 chr3 223220747 223221026 -4303552 + AluSx SINE Alu 19 306 -6 436 318 135 21 chr3 223221072 223221412 -4303166 - L1ME4a LINE L1 -143 5978 5600 1930 147 50 17 chr3 223221993 223222354 -4302224 - THE1C LTR MaLR 0 375 3 9795 126 9 36 chr3 223222354 223223975 -4300603 - THE1C-int LTR MaLR 0 1580 4 1809 167 56 11 chr3 223223978 223224337 -4300241 - THE1C LTR MaLR 0 375 1 21 0 0 0 chr3 223224547 223224568 -4300010 + AT_rich Low_complexity Low_complexity 1 21 0 2306 87 27 3 chr3 223225049 223225348 -4299230 + AluSx SINE Alu 5 310 -2 1879 151 4 7 chr3 223225547 223225851 -4298727 + AluSx SINE Alu 5 307 0 329 321 37 9 chr3 223226568 223226677 -4297901 - MIR SINE MIR -60 148 37 1646 153 14 24 chr3 223226921 223227208 -4297370 + AluJb SINE Alu 1 284 -28 2221 108 0 10 chr3 223227673 223227978 -4296600 + AluSx SINE Alu 1 302 -10 268 67 0 22 chr3 223227988 223228033 -4296545 + L1MA3 LINE L1 6262 6305 0 25 31 0 0 chr3 223228262 223228294 -4296284 + AT_rich Low_complexity Low_complexity 1 32 0 971 174 0 0 chr3 223229612 223229767 -4294811 + FRAM SINE Alu 1 155 -21 58 47 0 0 chr3 223230226 223230312 -4294266 + AT_rich Low_complexity Low_complexity 1 86 0 2488 87 0 0 chr3 223230406 223230718 -4293860 + AluSx SINE Alu 1 312 0 2207 135 0 0 chr3 223230846 223231158 -4293420 + AluSx SINE Alu 1 312 0 2225 96 0 13 chr3 223232682 223232983 -4291595 - AluSx SINE Alu -15 297 1 1013 123 53 0 chr3 223233726 223233897 -4290681 - L1MA4 LINE L1 -6 6294 6115 344 266 37 37 chr3 223234642 223234751 -4289827 - MIR SINE MIR -7 255 147 22 56 0 0 chr3 223235128 223235164 -4289414 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 223235376 223235397 -4289181 + AT_rich Low_complexity Low_complexity 1 21 0 201 208 0 38 chr3 223235870 223235923 -4288655 + (CATTT)n Simple_repeat Simple_repeat 2 52 0 21 0 0 0 chr3 223236023 223236044 -4288534 + AT_rich Low_complexity Low_complexity 1 21 0 787 220 129 22 chr3 223236586 223236902 -4287676 - HAL1 LINE L1 -628 1879 1508 589 224 75 5 chr3 223236949 223237150 -4287428 - HAL1 LINE L1 -1287 1220 1006 356 281 104 30 chr3 223237165 223237329 -4287249 + MER5B DNA MER1_type 3 178 0 682 233 215 37 chr3 223237342 223237775 -4286803 - HAL1 LINE L1 -1660 847 338 2245 118 0 13 chr3 223238049 223238363 -4286215 - AluSg SINE Alu 0 310 1 1125 189 57 105 chr3 223238474 223238625 -4285953 - AluJo SINE Alu -30 282 150 198 118 0 0 chr3 223238625 223238659 -4285919 + (TATG)n Simple_repeat Simple_repeat 1 34 0 1125 189 57 105 chr3 223238659 223238803 -4285775 - AluJo SINE Alu -162 150 1 195 100 0 0 chr3 223238807 223238837 -4285741 + (TATG)n Simple_repeat Simple_repeat 1 30 0 1429 167 17 59 chr3 223238840 223238985 -4285593 - AluJo SINE Alu -36 276 127 192 40 0 0 chr3 223238985 223239010 -4285568 + (TATG)n Simple_repeat Simple_repeat 2 26 0 1429 167 17 59 chr3 223239010 223239022 -4285556 - AluJo SINE Alu -185 127 116 1898 132 0 31 chr3 223239022 223239309 -4285269 - AluSx SINE Alu -32 280 3 1429 167 17 59 chr3 223239309 223239438 -4285140 - AluJo SINE Alu -196 116 1 191 296 130 9 chr3 223239840 223239948 -4284630 + L2 LINE L2 3152 3272 -41 2597 48 7 3 chr3 223240857 223241167 -4283411 + AluY SINE Alu 1 311 0 1496 207 10 7 chr3 223241213 223241508 -4283070 - AluJb SINE Alu -16 296 1 2477 93 7 0 chr3 223241898 223242208 -4282370 + AluSx SINE Alu 1 312 0 2368 85 0 16 chr3 223242379 223242686 -4281892 - AluY SINE Alu -9 302 1 1656 145 100 0 chr3 223242686 223242955 -4281623 - AluSx SINE Alu -16 296 1 2400 93 3 0 chr3 223243312 223243612 -4280966 + AluSp SINE Alu 1 301 -12 2078 150 0 7 chr3 223243690 223243990 -4280588 + AluSx SINE Alu 6 303 -9 20691 27 5 0 chr3 223247103 223249668 -4274910 - L1P LINE L1 -1860 4286 1710 996 9 0 0 chr3 223249668 223249775 -4274803 - U6 snRNA snRNA 0 107 1 330 346 59 7 chr3 223250666 223250819 -4273759 + MIR SINE MIR 102 262 0 261 253 46 0 chr3 223250836 223250923 -4273655 - MER103 DNA DNA -73 93 3 2533 87 3 0 chr3 223250999 223251309 -4273269 + AluSp SINE Alu 2 312 -1 1967 151 18 27 chr3 223251744 223252081 -4272497 - MER1B DNA MER1_type 0 337 4 266 304 108 10 chr3 223252087 223252189 -4272389 + L3 LINE CR1 1232 1343 -234 915 273 59 36 chr3 223252731 223253068 -4271510 + L2 LINE L2 2968 3312 -1 2326 92 3 0 chr3 223253156 223253450 -4271128 - AluSx SINE Alu -17 295 1 1305 208 103 105 chr3 223256400 223256943 -4267635 + MLT1F1 LTR MaLR 1 567 0 216 294 47 12 chr3 223256957 223257042 -4267536 - L2 LINE L2 -167 3105 3018 619 248 56 62 chr3 223257576 223257785 -4266793 - L1MC5 LINE L1 -37 7924 7716 2224 107 10 0 chr3 223257785 223258075 -4266503 - AluSx SINE Alu -19 293 1 619 248 56 62 chr3 223258075 223258188 -4266390 - L1MC5 LINE L1 -245 7716 7604 481 100 8 169 chr3 223258291 223258336 -4266242 - L1MC4 LINE L1 -817 7225 7174 2335 91 0 0 chr3 223258336 223258622 -4265956 + AluSq SINE Alu 1 286 -27 481 100 8 169 chr3 223258622 223258706 -4265872 - L1MC4 LINE L1 -868 7174 7117 247 307 166 12 chr3 223259115 223259278 -4265300 + MIR3 SINE MIR 14 201 -7 244 260 20 0 chr3 223259410 223259460 -4265118 - L2 LINE L2 -31 3282 3232 191 225 0 0 chr3 223259732 223259772 -4264806 - L2 LINE L2 -12 3260 3221 293 298 28 57 chr3 223259791 223259932 -4264646 - MIR3 SINE MIR -58 150 14 680 225 116 76 chr3 223259983 223260522 -4264056 - MLT1F1 LTR MaLR -6 561 2 226 146 36 55 chr3 223260553 223260608 -4263970 + Tigger5 DNA MER2_type 2 55 -2268 357 261 0 11 chr3 223260618 223260706 -4263872 + Tigger5 DNA MER2_type 2237 2323 0 342 246 118 36 chr3 223260834 223260897 -4263681 + L1MC4 LINE L1 6583 6639 -1403 2200 79 57 0 chr3 223260897 223261177 -4263401 - AluSp SINE Alu -17 296 1 342 246 118 36 chr3 223261177 223261223 -4263355 + L1MC4 LINE L1 6639 6701 -1341 717 178 16 0 chr3 223261790 223261919 -4262659 + FLAM_C SINE Alu 2 132 -1 180 0 0 0 chr3 223262650 223262670 -4261908 + (CAAA)n Simple_repeat Simple_repeat 1 20 0 810 272 176 44 chr3 223263558 223263966 -4260612 - L2 LINE L2 -1 3312 2851 1796 195 3 0 chr3 223265372 223265664 -4258914 - AluJb SINE Alu -19 293 1 271 188 38 33 chr3 223265668 223265810 -4258768 + CT-rich Low_complexity Low_complexity 1 142 0 682 198 24 0 chr3 223265813 223265939 -4258639 - FLAM_A SINE Alu -4 129 1 260 211 28 56 chr3 223265950 223266021 -4258557 + L2 LINE L2 3158 3226 -87 353 359 123 14 chr3 223266406 223266626 -4257952 - L2 LINE L2 -824 2490 2247 373 275 50 45 chr3 223266668 223267006 -4257572 + MLT1J LTR MaLR 72 409 0 1533 139 0 0 chr3 223267089 223267298 -4257280 - AluJb SINE Alu -18 294 86 281 357 84 59 chr3 223268151 223268389 -4256189 + L2 LINE L2 3029 3272 0 * 302 372 92 20 chr3 223268358 223268651 -4255927 + L3 LINE CR1 579 892 -685 1642 166 29 57 chr3 223268670 223268984 -4255594 + AluJo SINE Alu 1 305 -7 511 217 9 2 chr3 223268988 223269116 -4255462 + L1ME2 LINE L1 6035 6164 -2 1278 189 16 42 chr3 223269137 223269508 -4255070 + LTR52 LTR ERVL 11 419 -2 465 328 141 63 chr3 223269519 223270071 -4254507 + L3 LINE CR1 911 1505 -72 2533 68 0 3 chr3 223270086 223270395 -4254183 + AluSg SINE Alu 1 308 -2 507 222 68 132 chr3 223272550 223272816 -4251762 - MIR SINE MIR -10 252 4 226 207 115 35 chr3 223273030 223273117 -4251461 - MIR SINE MIR -2 260 167 580 304 15 25 chr3 223273151 223273349 -4251229 + MIR SINE MIR 70 262 0 285 373 63 0 chr3 223274002 223274144 -4250434 - MIR SINE MIR -56 206 56 1849 139 75 33 chr3 223274189 223274549 -4250029 + THE1C LTR MaLR 1 375 0 736 125 16 0 chr3 223276086 223276214 -4248364 + GA-rich Low_complexity Low_complexity 3 132 0 185 156 22 44 chr3 223277163 223277208 -4247370 + L2 LINE L2 2713 2756 -558 581 318 58 69 chr3 223277344 223277865 -4246713 + L2 LINE L2 2713 3271 -1 1474 106 5 0 chr3 223277923 223278112 -4246466 - AluSg/x SINE Alu -14 296 107 198 0 0 0 chr3 223278551 223278573 -4246005 + (TA)n Simple_repeat Simple_repeat 1 22 0 2382 86 30 0 chr3 223278574 223278878 -4245700 - AluSq SINE Alu 0 313 1 2277 94 0 20 chr3 223279023 223279322 -4245256 - AluY SINE Alu -9 302 10 1878 140 35 0 chr3 223279335 223279620 -4244958 - AluSx SINE Alu -14 298 4 2311 103 3 0 chr3 223280240 223280540 -4244038 - AluSg SINE Alu -9 301 1 440 238 69 20 chr3 223281202 223281404 -4243174 - L1MC/D LINE L1 -2343 5465 5254 836 146 0 0 chr3 223281494 223281617 -4242961 + FLAM_C SINE Alu 1 123 -20 2438 80 0 0 chr3 223282417 223282706 -4241872 - AluSg SINE Alu -21 289 1 307 260 31 21 chr3 223283455 223283551 -4241027 - MER5B DNA MER1_type 0 178 82 289 273 20 50 chr3 223283577 223283676 -4240902 - MER5B DNA MER1_type -78 100 5 498 285 151 0 chr3 223284192 223284378 -4240200 - MIR SINE MIR -41 221 8 419 277 17 0 chr3 223284553 223284672 -4239906 - MER103 DNA DNA -43 123 3 247 294 54 11 chr3 223284754 223284846 -4239732 - MIR3 SINE MIR -52 156 61 2482 77 0 0 chr3 223284975 223285273 -4239305 - AluY SINE Alu -13 298 1 300 214 100 0 chr3 223285889 223285959 -4238619 + MIR SINE MIR 4 80 -182 532 268 119 0 chr3 223286760 223286928 -4237650 - L2 LINE L2 -1293 2021 1834 2416 85 0 10 chr3 223287142 223287448 -4237130 - AluSx SINE Alu -9 303 1 1067 212 10 0 chr3 223288325 223288528 -4236050 - MER3 DNA MER1_type -4 205 1 287 260 14 0 chr3 223289299 223289372 -4235206 - MIR SINE MIR 0 262 189 4432 209 47 50 chr3 223289530 223291301 -4233277 - L1ME1 LINE L1 -5 6230 4285 2265 107 0 7 chr3 223291301 223291599 -4232979 - AluSx SINE Alu -16 296 1 4432 209 47 50 chr3 223291599 223292062 -4232516 - L1ME1 LINE L1 -1950 4285 3822 247 94 109 78 chr3 223292092 223292156 -4232422 - L1ME1 LINE L1 -2502 3713 3648 2059 147 3 7 chr3 223292162 223292461 -4232117 - AluSx SINE Alu -14 298 1 1972 216 49 19 chr3 223292468 223292996 -4231582 - L1ME1 LINE L1 -3382 2833 2290 2407 136 57 134 chr3 223292997 223293467 -4231111 - Tigger2 DNA MER2_type 0 2718 1 1240 263 43 32 chr3 223293490 223294091 -4230487 - L1ME1 LINE L1 -4086 2310 1703 198 0 0 0 chr3 223295653 223295675 -4228903 + (TA)n Simple_repeat Simple_repeat 1 22 0 2233 86 30 0 chr3 223295676 223295980 -4228598 - AluSq SINE Alu 0 313 1 2132 94 0 20 chr3 223296125 223296424 -4228154 - AluY SINE Alu -9 302 10 1732 140 35 0 chr3 223296437 223296722 -4227856 - AluSx SINE Alu -14 298 4 717 174 11 51 chr3 223297295 223297342 -4227236 - L1MB3 LINE L1 -1 6182 6135 2224 106 0 0 chr3 223297342 223297645 -4226933 - AluSx SINE Alu -9 303 1 717 174 11 51 chr3 223297645 223297775 -4226803 - L1MB3 LINE L1 -48 6135 6012 22 0 0 0 chr3 223298296 223298318 -4226260 + AT_rich Low_complexity Low_complexity 1 22 0 821 165 73 37 chr3 223299263 223299409 -4225169 - AluJo SINE Alu -22 290 151 518 0 16 0 chr3 223299409 223299471 -4225107 + (TTTA)n Simple_repeat Simple_repeat 2 64 0 2114 105 0 7 chr3 223299471 223299756 -4224822 - AluSx SINE Alu -29 283 1 821 165 73 37 chr3 223299756 223299772 -4224806 - AluJo SINE Alu -160 152 121 1294 196 29 52 chr3 223299887 223300193 -4224385 - AluJo SINE Alu -3 299 1 2247 66 7 20 chr3 223300461 223300766 -4223812 - AluY SINE Alu -10 301 1 1149 153 39 5 chr3 223301208 223301411 -4223167 + MER2 DNA MER2_type 1 210 -135 1957 87 40 0 chr3 223301433 223301709 -4222869 - AluSx SINE Alu -25 287 1 273 191 0 0 chr3 223301754 223301801 -4222777 + MER2 DNA MER2_type 268 314 -31 705 234 101 62 chr3 223301917 223302126 -4222452 - MIR SINE MIR -44 218 2 2201 84 17 0 chr3 223302167 223302463 -4222115 - AluSp SINE Alu -12 301 1 861 200 6 0 chr3 223302681 223302851 -4221727 + AluJo SINE Alu 15 185 -127 21 0 0 0 chr3 223302866 223302887 -4221691 + AT_rich Low_complexity Low_complexity 1 21 0 26 0 0 0 chr3 223307707 223307733 -4216845 + AT_rich Low_complexity Low_complexity 1 26 0 29 60 0 0 chr3 223308399 223308449 -4216129 + AT_rich Low_complexity Low_complexity 1 50 0 2400 65 0 0 chr3 223308854 223309161 -4215417 - AluY SINE Alu -4 307 1 2268 92 0 3 chr3 223309790 223310096 -4214482 - AluSx SINE Alu -7 305 1 696 150 0 95 chr3 223310117 223310264 -4214314 - FLAM_C SINE Alu -10 133 1 2081 116 3 0 chr3 223312188 223312489 -4212089 - AluSx SINE Alu -10 302 1 222 226 0 19 chr3 223314620 223314673 -4209905 - MIR SINE MIR -126 82 31 280 274 68 8 chr3 223316164 223316209 -4208369 - L1ME4a LINE L1 -59 6062 6021 826 214 88 5 chr3 223316209 223316401 -4208177 - MER3 DNA MER1_type -1 208 1 280 274 68 8 chr3 223316401 223316472 -4208106 - L1ME4a LINE L1 -100 6021 5939 426 244 218 10 chr3 223316558 223316861 -4207717 - L1MC5 LINE L1 -116 7845 7480 832 191 13 0 chr3 223316871 223317023 -4207555 - FRAM SINE Alu -9 157 4 1015 172 0 0 chr3 223317152 223317321 -4207257 - AluSq SINE Alu -3 310 142 1095 121 0 0 chr3 223317328 223317485 -4207093 - AluSq SINE Alu -15 298 142 2274 80 0 3 chr3 223317492 223317791 -4206787 - AluSq SINE Alu -15 298 1 271 346 47 63 chr3 223317900 223318154 -4206424 - L2 LINE L2 -17 3255 3006 245 214 125 0 chr3 223318400 223318456 -4206122 + MIR SINE MIR 43 105 -157 22 56 0 0 chr3 223319062 223319098 -4205480 + GC_rich Low_complexity Low_complexity 1 36 0 27 49 0 0 chr3 223319402 223319443 -4205135 + GC_rich Low_complexity Low_complexity 1 41 0 212 220 254 0 chr3 223320944 223321003 -4203575 + MER5A DNA MER1_type 110 183 -6 1458 166 13 39 chr3 223321675 223321839 -4202739 - AluSq SINE Alu -13 300 146 2310 89 0 3 chr3 223321839 223322143 -4202435 - AluSq SINE Alu -10 303 1 1458 166 13 39 chr3 223322143 223322285 -4202293 - AluSq SINE Alu -167 146 2 340 346 97 48 chr3 223322444 223322713 -4201865 + L2 LINE L2 2939 3220 -52 429 228 30 0 chr3 223323425 223323526 -4201052 + MER5A DNA MER1_type 35 138 -51 190 314 114 0 chr3 223323581 223323686 -4200892 + L2 LINE L2 3142 3258 -14 2144 100 3 3 chr3 223323768 223324077 -4200501 - AluSc SINE Alu 0 309 1 716 283 21 13 chr3 223324312 223324549 -4200029 - MLT1J LTR MaLR -12 499 261 190 244 47 70 chr3 223324806 223324892 -4199686 + L2 LINE L2 3016 3099 -214 2109 113 10 0 chr3 223324902 223325203 -4199375 - AluSx SINE Alu -8 304 1 1384 187 36 26 chr3 223325203 223325508 -4199070 - AluJo SINE Alu -4 308 1 901 275 55 53 chr3 223325542 223325957 -4198621 - L2 LINE L2 0 3313 2898 245 272 37 12 chr3 223325960 223326041 -4198537 + L2 LINE L2 3150 3232 -81 196 268 73 65 chr3 223326316 223326439 -4198139 + L2 LINE L2 3184 3307 -6 647 227 107 78 chr3 223326593 223326976 -4197602 - MSTD LTR MaLR -2 394 1 3781 179 67 0 chr3 223327799 223328518 -4196060 - L1MB7 LINE L1 -19 6165 5399 2125 81 3 34 chr3 223328819 223329140 -4195438 - AluSx SINE Alu -1 311 1 21 36 0 0 chr3 223330061 223330089 -4194489 + GC_rich Low_complexity Low_complexity 1 28 0 181 180 60 40 chr3 223331213 223331263 -4193315 + L2 LINE L2 3219 3269 -3 411 308 31 36 chr3 223334431 223334626 -4189952 - MIR3 SINE MIR -12 196 3 221 329 52 32 chr3 223335344 223335499 -4189079 + MIR SINE MIR 53 210 -52 2313 72 20 0 chr3 223336492 223336797 -4187781 + AluSq SINE Alu 1 311 -2 261 0 0 0 chr3 223337534 223337563 -4187015 + (TC)n Simple_repeat Simple_repeat 2 30 0 * 324 0 0 0 chr3 223337562 223337598 -4186980 + (TG)n Simple_repeat Simple_repeat 1 36 0 266 330 118 13 chr3 223338197 223338503 -4186075 - L1ME LINE L1 -288 5878 5541 393 207 17 103 chr3 223339401 223339517 -4185061 - L2 LINE L2 -25 3288 3183 251 271 162 54 chr3 223339607 223339710 -4184868 - L2 LINE L2 -134 3179 3089 2080 117 0 3 chr3 223339710 223340010 -4184568 - AluSq SINE Alu -14 299 1 251 271 162 54 chr3 223340010 223340220 -4184358 - L2 LINE L2 -224 3089 2832 235 260 160 0 chr3 223340269 223340419 -4184159 - L2 LINE L2 -616 2698 2525 1754 109 43 176 chr3 223341290 223341361 -4183217 - THE1B LTR MaLR 0 364 285 2099 102 0 7 chr3 223341361 223341655 -4182923 - AluSx SINE Alu -20 292 1 1754 109 43 176 chr3 223341655 223342003 -4182575 - THE1B LTR MaLR -79 285 1 1646 175 76 17 chr3 223342247 223342601 -4181977 + THE1C LTR MaLR 1 375 0 2040 182 22 22 chr3 223344253 223344666 -4179912 - MSTB LTR MaLR 0 426 14 214 254 36 64 chr3 223344666 223344776 -4179802 - L3 LINE CR1 -334 1243 1137 402 74 0 0 chr3 223344780 223344834 -4179744 + MER30 DNA MER1_type 1 54 -176 1261 96 30 6 chr3 223344834 223345001 -4179577 + AluSx SINE Alu 1 171 -141 1384 66 0 0 chr3 223345118 223345285 -4179293 + AluY SINE Alu 131 297 -14 840 65 84 0 chr3 223345287 223345394 -4179184 - AluSg SINE Alu -194 116 1 2010 191 101 14 chr3 223346304 223346729 -4177849 + MER66B LTR ERV1 25 486 0 274 242 132 0 chr3 223346948 223347039 -4177539 + MIR SINE MIR 49 151 -111 494 244 15 15 chr3 223347045 223347176 -4177402 - MIR SINE MIR 0 262 132 24 85 0 0 chr3 223347239 223347298 -4177280 + AT_rich Low_complexity Low_complexity 1 59 0 2027 238 36 17 chr3 223347301 223348203 -4176375 + L1M4b LINE L1 1206 2264 -4695 309 120 0 0 chr3 223348231 223348287 -4176291 + Alu SINE Alu 1 41 -260 666 102 34 26 chr3 223348391 223348665 -4175913 + (CA)n Simple_repeat Simple_repeat 1 276 0 689 115 55 0 chr3 223348724 223349112 -4175466 + (CA)n Simple_repeat Simple_repeat 1 409 0 508 177 37 8 chr3 223349126 223349369 -4175209 + (CA)n Simple_repeat Simple_repeat 1 250 0 270 306 199 29 chr3 223349571 223349777 -4174801 + MIR SINE MIR 22 262 0 1794 157 68 0 chr3 223349879 223350204 -4174374 + MER7A DNA MER2_type 2 346 0 923 89 7 0 chr3 223351045 223351180 -4173398 + (TCC)n Simple_repeat Simple_repeat 1 136 0 222 118 0 0 chr3 223351281 223351315 -4173263 + (TCCCC)n Simple_repeat Simple_repeat 2 35 0 207 221 42 0 chr3 223351305 223351400 -4173178 + CT-rich Low_complexity Low_complexity 3 101 0 * 285 98 0 0 chr3 223351397 223351438 -4173140 + (TCCCC)n Simple_repeat Simple_repeat 1 41 0 615 240 0 0 chr3 223351440 223351569 -4173009 - FLAM_A SINE Alu -4 129 1 424 295 33 0 chr3 223352314 223352436 -4172142 - L2 LINE L2 -9 3263 3138 1480 57 0 0 chr3 223353397 223353572 -4171006 - AluY SINE Alu -9 302 128 1815 64 0 0 chr3 223353672 223353890 -4170688 - AluSp SINE Alu -95 218 1 225 288 159 18 chr3 223356014 223356177 -4168401 + MER5A DNA MER1_type 1 186 -3 304 302 126 22 chr3 223356324 223356506 -4168072 + Charlie8 DNA MER1_type 84 284 -2133 432 0 0 0 chr3 223356835 223356883 -4167695 + (CA)n Simple_repeat Simple_repeat 2 49 0 3460 211 12 50 chr3 223358054 223358909 -4165669 + L1MA9 LINE L1 5445 6266 -46 238 133 0 50 chr3 223358981 223359041 -4165537 + (TTCCC)n Simple_repeat Simple_repeat 2 58 0 7541 18 0 0 chr3 223359143 223360687 -4163891 + L1PA2 LINE L1 4628 6179 0 258 32 0 0 chr3 223360994 223361025 -4163553 + (TCC)n Simple_repeat Simple_repeat 1 31 0 304 269 0 0 chr3 223361994 223362061 -4162517 - MER5A DNA MER1_type -111 78 12 200 274 0 0 chr3 223362084 223362135 -4162443 + MIR SINE MIR 23 73 -135 396 300 15 8 chr3 223363372 223363502 -4161076 + (CA)n Simple_repeat Simple_repeat 2 132 0 196 263 92 0 chr3 223364251 223364327 -4160251 - MIR SINE MIR -23 239 157 749 274 51 0 chr3 223364424 223364621 -4159957 - MIR SINE MIR -28 234 28 521 98 70 0 chr3 223364763 223364906 -4159672 + (TG)n Simple_repeat Simple_repeat 1 153 0 2293 165 40 5 chr3 223364918 223365367 -4159211 - MLT1C LTR MaLR -2 465 1 525 184 0 0 chr3 223366369 223366483 -4158095 + (CA)n Simple_repeat Simple_repeat 1 114 0 381 188 0 0 chr3 223366524 223366604 -4157974 + (CA)n Simple_repeat Simple_repeat 1 80 0 246 242 0 0 chr3 223366784 223366850 -4157728 + (CA)n Simple_repeat Simple_repeat 1 66 0 366 325 84 20 chr3 223366892 223367095 -4157483 + MIR SINE MIR 13 228 -34 785 266 39 9 chr3 223367306 223367535 -4157043 - MIR SINE MIR -7 255 20 244 332 74 23 chr3 223367787 223368004 -4156574 - L2 LINE L2 -187 3085 2858 579 221 23 23 chr3 223370787 223370918 -4153660 - L2 LINE L2 -2 3270 3140 223 210 0 48 chr3 223371192 223371254 -4153324 + MIR3 SINE MIR 100 159 -49 509 225 78 7 chr3 223371322 223371464 -4153114 - MER103 DNA DNA -6 160 9 551 275 37 11 chr3 223372334 223372523 -4152055 - MIR3 SINE MIR -6 202 9 202 143 24 60 chr3 223372926 223373010 -4151568 + (CTA)n Simple_repeat Simple_repeat 3 83 0 1781 176 58 6 chr3 223373125 223373472 -4151106 + MLT1A1 LTR MaLR 1 365 0 430 278 26 20 chr3 223373526 223373677 -4150901 - MIR3 SINE MIR -22 186 35 669 266 28 41 chr3 223374863 223375081 -4149497 - MIR SINE MIR 0 262 48 226 345 66 0 chr3 223376055 223376111 -4148467 - MIR SINE MIR -49 213 162 2406 92 0 25 chr3 223376111 223376427 -4148151 - AluSg SINE Alu 0 310 3 226 345 66 0 chr3 223376427 223376512 -4148066 - MIR SINE MIR -100 162 63 631 309 102 4 chr3 223377274 223377530 -4147048 + L3 LINE CR1 1180 1460 -117 556 298 59 65 chr3 223377938 223378281 -4146297 - L1MB8 LINE L1 -349 5829 5603 261 0 0 0 chr3 223378281 223378310 -4146268 + (TG)n Simple_repeat Simple_repeat 2 30 0 556 298 59 65 chr3 223378310 223378560 -4146018 - L1MB8 LINE L1 -575 5603 5353 304 206 191 2 chr3 223378977 223379106 -4145472 + MER5A DNA MER1_type 6 189 0 228 274 16 0 chr3 223379869 223379931 -4144647 - LTR33A LTR ERVL -2 521 459 2067 75 4 4 chr3 223380050 223380302 -4144276 - AluSp SINE Alu -61 252 1 183 42 0 0 chr3 223380311 223380335 -4144243 + (T)n Simple_repeat Simple_repeat 1 24 0 2344 85 3 3 chr3 223380401 223380706 -4143872 - AluSx SINE Alu -7 305 1 289 289 31 21 chr3 223380713 223380847 -4143731 + MER5A DNA MER1_type 44 175 -3 2602 188 56 38 chr3 223381721 223381813 -4142765 + LTR9B LTR ERV1 7 96 -548 3243 55 0 0 chr3 223381813 223382231 -4142347 - L1PA5 LINE L1 0 6154 5737 2602 188 56 38 chr3 223382231 223382765 -4141813 + LTR9B LTR ERV1 96 644 0 530 265 25 69 chr3 223383082 223383286 -4141292 - L2 LINE L2 -1 3312 3118 246 143 48 0 chr3 223383324 223383387 -4141191 + (TG)n Simple_repeat Simple_repeat 1 66 0 301 290 97 11 chr3 223383387 223383563 -4141015 - L2 LINE L2 -216 3097 2907 932 101 0 0 chr3 223384248 223384367 -4140211 - AluSg/x SINE Alu -18 292 174 285 265 18 9 chr3 223386536 223386653 -4137925 - MIR SINE MIR -27 181 63 20531 138 33 42 chr3 223387546 223389969 -4134609 + L1MA3 LINE L1 16 2458 -5266 633 168 0 24 chr3 223389969 223390094 -4134484 + AluSg/x SINE Alu 190 311 -1 20531 138 33 42 chr3 223390094 223390567 -4134011 + L1MA3 LINE L1 2458 2934 -4790 2491 91 0 3 chr3 223390567 223390876 -4133702 + AluSx SINE Alu 1 308 -4 20531 138 33 42 chr3 223390876 223390969 -4133609 + L1MA3 LINE L1 2934 3026 -4698 2302 78 0 3 chr3 223390969 223391274 -4133304 + AluY SINE Alu 1 304 0 20531 138 33 42 chr3 223391274 223395934 -4128644 + L1MA3 LINE L1 3026 7724 0 2271 94 3 0 chr3 223396074 223396372 -4128206 + AluSq SINE Alu 1 299 -14 2191 86 10 3 chr3 223396398 223396699 -4127879 + AluY SINE Alu 1 303 -8 379 293 33 61 chr3 223397417 223397598 -4126980 + MIR SINE MIR 11 186 -76 215 288 63 18 chr3 223398712 223398823 -4125755 + MIR3 SINE MIR 49 164 -44 2779 79 22 5 chr3 223399160 223399529 -4125049 - THE1C LTR MaLR 0 375 1 249 227 142 13 chr3 223400055 223400142 -4124436 - MIR SINE MIR -69 139 43 378 267 8 42 chr3 223400253 223400373 -4124205 + MIR SINE MIR 33 148 -60 2234 81 3 10 chr3 223401012 223401310 -4123268 - AluSp SINE Alu -16 297 2 2108 94 7 30 chr3 223401946 223402244 -4122334 - AluSx SINE Alu -21 291 1 186 309 15 0 chr3 223402854 223402922 -4121656 - MIR SINE MIR -114 148 80 1840 171 11 53 chr3 223403953 223404333 -4120245 - L1MC3 LINE L1 -292 7493 7130 2164 85 0 29 chr3 223404742 223405048 -4119530 + AluSq SINE Alu 1 297 -16 222 192 0 0 chr3 223405655 223405707 -4118871 + CT-rich Low_complexity Low_complexity 4 55 0 41158 32 23 2 chr3 223405876 223411878 -4112700 - L1PA2 LINE L1 -19 6136 4 341 213 107 66 chr3 223415489 223415511 -4109067 + MIR SINE MIR 82 102 -160 1736 169 0 3 chr3 223415511 223415807 -4108771 - AluSq SINE Alu -18 295 1 341 213 107 66 chr3 223415807 223415906 -4108672 + MIR SINE MIR 102 208 -54 2452 172 101 0 chr3 223416121 223416586 -4107992 - LTR64 LTR ERVK 0 513 2 1713 127 76 4 chr3 223416704 223416980 -4107598 - AluSx SINE Alu -16 296 1 267 302 115 7 chr3 223417579 223417718 -4106860 - MIR3 SINE MIR -6 202 49 260 290 101 58 chr3 223417879 223418017 -4106561 - MIR SINE MIR -118 144 1 307 158 18 18 chr3 223418332 223418389 -4106189 + MER5A DNA MER1_type 14 70 -119 630 226 54 6 chr3 223419919 223420087 -4104491 + MIR SINE MIR 86 261 -1 2134 205 35 9 chr3 223422550 223423003 -4101575 + MLT1C LTR MaLR 1 465 -2 320 233 108 4 chr3 223424109 223424233 -4100345 + MIR3 SINE MIR 68 205 -3 2373 74 0 0 chr3 223424283 223424581 -4099997 - AluSq SINE Alu -15 298 1 749 237 78 39 chr3 223428988 223429220 -4095358 + MIR SINE MIR 18 258 -4 262 221 47 23 chr3 223429230 223429316 -4095262 + MIR3 SINE MIR 2 89 -119 21 0 0 0 chr3 223430193 223430214 -4094364 + AT_rich Low_complexity Low_complexity 1 21 0 492 322 57 34 chr3 223430281 223430666 -4093912 + MARNA DNA Mariner 26 419 -167 1649 169 13 10 chr3 223430670 223430978 -4093600 + AluJo SINE Alu 1 309 -3 189 302 0 0 chr3 223431664 223431707 -4092871 - L2 LINE L2 -16 3256 3214 499 254 109 21 chr3 223431774 223431875 -4092703 + L1ME4a LINE L1 5652 5743 -378 1719 149 29 16 chr3 223431875 223432183 -4092395 + AluJo SINE Alu 1 312 0 499 254 109 21 chr3 223432183 223432364 -4092214 + L1ME4a LINE L1 5743 5959 -162 235 236 229 0 chr3 223434404 223434544 -4090034 + L1ME4a LINE L1 5950 6121 0 184 304 63 0 chr3 223435157 223435236 -4089342 + MIR SINE MIR 43 126 -82 280 268 139 20 chr3 223435571 223435694 -4088884 + MIR3 SINE MIR 34 167 -41 1016 279 96 23 chr3 223438097 223438491 -4086087 - LTR16A LTR ERVL -15 435 13 237 168 43 0 chr3 223439161 223439210 -4085368 - Alu SINE Alu -42 259 214 189 382 13 0 chr3 223439211 223439287 -4085291 - L2 LINE L2 -50 3222 3146 375 281 35 0 chr3 223439575 223439689 -4084889 + MIR3 SINE MIR 51 168 -40 2210 100 0 10 chr3 223441220 223441519 -4083059 + AluSg SINE Alu 1 296 -14 248 254 0 0 chr3 223441603 223441670 -4082908 + L3 LINE CR1 1401 1467 -110 180 0 0 0 chr3 223442376 223442396 -4082182 + (CAAAA)n Simple_repeat Simple_repeat 3 22 0 1750 172 3 30 chr3 223442415 223442712 -4081866 + AluJo SINE Alu 2 290 -22 382 281 118 7 chr3 223443185 223443320 -4081258 - MIR3 SINE MIR -25 183 34 641 265 13 7 chr3 223443329 223443480 -4081098 - L2 LINE L2 -6 3307 3156 2296 100 3 0 chr3 223443501 223443790 -4080788 + AluSx SINE Alu 1 290 -22 1040 263 94 86 chr3 223443817 223444559 -4080019 - L2 LINE L2 -339 2975 2228 649 250 159 62 chr3 223444969 223445604 -4078974 + HAL1 LINE L1 421 993 -1514 2420 87 0 0 chr3 223445604 223445904 -4078674 + AluY SINE Alu 1 300 -11 649 250 159 62 chr3 223445904 223446785 -4077793 + HAL1 LINE L1 993 2290 -217 2252 108 3 0 chr3 223446785 223447081 -4077497 + AluSx SINE Alu 1 297 -15 649 250 159 62 chr3 223447081 223447317 -4077261 + HAL1 LINE L1 2290 2502 -5 630 262 124 25 chr3 223447331 223447606 -4076972 - L2 LINE L2 -1094 2220 1919 7928 157 52 12 chr3 223447636 223449911 -4074667 + L1PA14 LINE L1 3872 6152 -9 1715 171 93 10 chr3 223450096 223450193 -4074385 - MER63B DNA MER1_type -632 430 342 2350 101 0 0 chr3 223450193 223450489 -4074089 + AluSg SINE Alu 1 296 -14 1715 171 93 10 chr3 223450489 223450788 -4073790 - MER63B DNA MER1_type -720 342 1 502 257 18 0 chr3 223451569 223451678 -4072900 + MIR SINE MIR 34 144 -64 552 242 43 25 chr3 223451734 223451895 -4072683 - MER103 DNA DNA 0 166 3 2189 123 7 0 chr3 223452051 223452353 -4072225 + AluSc SINE Alu 1 304 -5 338 347 52 15 chr3 223452509 223452709 -4071869 - MIR SINE MIR -17 245 31 260 241 0 0 chr3 223452906 223452964 -4071614 + MIR SINE MIR 176 233 -29 372 279 69 12 chr3 223454521 223454669 -4069909 + MIR3 SINE MIR 14 164 -63 804 256 45 97 chr3 223454671 223455092 -4069486 + MLT1J LTR MaLR 1 399 -112 272 226 0 0 chr3 223455179 223455232 -4069346 + MIR SINE MIR 155 207 -55 317 252 137 53 chr3 223456570 223456701 -4067877 + MIR SINE MIR 2 143 -119 987 154 6 51 chr3 223456703 223456878 -4067700 - FRAM SINE Alu -12 164 1 2237 78 60 3 chr3 223456900 223457184 -4067394 + AluSx SINE Alu 1 300 -12 370 298 47 23 chr3 223457542 223457713 -4066865 + MIR SINE MIR 59 233 -29 558 223 69 29 chr3 223459396 223459571 -4065007 + MIR3 SINE MIR 14 195 -13 495 279 0 89 chr3 223460893 223461051 -4063527 - MIR3 SINE MIR -57 151 8 2467 92 0 0 chr3 223461552 223461856 -4062722 - AluSg SINE Alu -6 304 1 407 212 12 0 chr3 223461881 223461966 -4062612 + MER94 DNA DNA 2 87 -47 394 271 69 7 chr3 223462908 223463052 -4061526 + L1ME3 LINE L1 5693 5845 -317 1811 169 91 0 chr3 223463913 223464263 -4060315 - MER50 LTR ERV1 -28 706 325 195 42 0 0 chr3 223464326 223464350 -4060228 + (TCCC)n Simple_repeat Simple_repeat 4 27 0 1591 158 18 43 chr3 223464414 223464743 -4059835 - MER50 LTR ERV1 -413 321 1 190 219 415 24 chr3 223464747 223464870 -4059708 + MIR3 SINE MIR 21 191 -17 222 62 0 0 chr3 223466981 223467013 -4057565 + (TCCC)n Simple_repeat Simple_repeat 4 35 0 587 135 90 23 chr3 223467099 223467232 -4057346 + MER53 DNA DNA 1 142 -47 21 110 0 0 chr3 223467248 223467339 -4057239 + AT_rich Low_complexity Low_complexity 1 91 0 1959 134 48 0 chr3 223467339 223467631 -4056947 - AluSx SINE Alu -6 306 1 240 35 0 0 chr3 223467993 223468022 -4056556 + (GGGAGA)n Simple_repeat Simple_repeat 3 31 0 447 171 0 0 chr3 223468023 223468128 -4056450 + (TG)n Simple_repeat Simple_repeat 1 105 0 531 270 26 20 chr3 223468570 223468722 -4055856 + MIR SINE MIR 65 217 -45 387 208 52 0 chr3 223468760 223468837 -4055741 + MIR SINE MIR 58 138 -70 310 230 29 101 chr3 223468878 223469017 -4055561 + LTR67 LTR ERVL 20 148 -409 521 234 16 97 chr3 223469800 223470048 -4054530 - L1MC5 LINE L1 -27 7934 7707 2365 95 0 0 chr3 223471311 223471605 -4052973 - AluSq SINE Alu -19 294 1 1819 169 78 0 chr3 223471889 223472185 -4052393 + 7SLRNA srpRNA srpRNA 1 319 -1 184 246 116 14 chr3 223472351 223472420 -4052158 - L2 LINE L2 -43 3229 3154 2292 93 0 3 chr3 223474305 223474595 -4049983 + AluSg SINE Alu 1 289 -21 2214 110 13 0 chr3 223474787 223475087 -4049491 + AluSx SINE Alu 1 304 -8 618 101 0 0 chr3 223475087 223475196 -4049382 + (TA)n Simple_repeat Simple_repeat 1 109 0 596 245 71 46 chr3 223475462 223475658 -4048920 - Charlie8 DNA MER1_type -2216 201 1 244 276 102 20 chr3 223476695 223476793 -4047785 + MER94 DNA DNA 5 110 -24 1439 164 54 75 chr3 223477786 223478106 -4046472 - MLT1A1 LTR MaLR 0 365 53 1959 117 106 108 chr3 223478106 223478532 -4046046 + MSTA LTR MaLR 1 425 -3 1439 164 54 75 chr3 223478532 223478584 -4045994 - MLT1A1 LTR MaLR -312 53 1 207 243 0 0 chr3 223479826 223479863 -4044715 - L2 LINE L2 -20 3252 3216 251 251 50 165 chr3 223479867 223480096 -4044482 + L2 LINE L2 2770 2967 -305 2303 123 3 0 chr3 223480096 223480405 -4044173 - AluSg SINE Alu 0 310 1 251 251 50 165 chr3 223480405 223480484 -4044094 + L2 LINE L2 2967 3053 -219 442 245 0 28 chr3 223480874 223480980 -4043598 + MIR SINE MIR 44 146 -116 23 0 0 0 chr3 223482142 223482165 -4042413 + AT_rich Low_complexity Low_complexity 1 23 0 203 178 0 22 chr3 223482840 223482885 -4041693 + (CCTG)n Simple_repeat Simple_repeat 3 46 0 * 226 204 41 0 chr3 223482862 223482911 -4041667 + (TCCA)n Simple_repeat Simple_repeat 1 51 0 240 280 53 13 chr3 223483324 223483399 -4041179 + MIR3 SINE MIR 90 167 -41 451 296 113 72 chr3 223483431 223483776 -4040802 - L3 LINE CR1 0 1577 1219 429 70 0 0 chr3 223483808 223483865 -4040713 + (CA)n Simple_repeat Simple_repeat 1 57 0 2419 169 29 18 chr3 223484241 223484733 -4039845 - Tigger3(Golem) DNA MER2_type -125 2904 2408 768 146 0 0 chr3 223484757 223484867 -4039711 - FLAM_C SINE Alu -32 111 2 660 97 90 28 chr3 223484874 223485018 -4039560 - Tigger3(Golem) DNA MER2_type -599 2430 2278 550 193 0 9 chr3 223485009 223485118 -4039460 - Tigger3(Golem) DNA MER2_type -2921 108 1 * 196 246 70 0 chr3 223485884 223485941 -4038637 + MIR SINE MIR 91 151 -111 636 281 78 32 chr3 223486249 223486305 -4038273 - MIR SINE MIR 0 262 210 1538 131 14 0 chr3 223486305 223486526 -4038052 - AluJb SINE Alu -4 308 85 636 281 78 32 chr3 223486526 223486686 -4037892 - MIR SINE MIR -52 210 36 210 271 0 0 chr3 223486925 223486973 -4037605 - MIR SINE MIR -161 101 54 1459 201 36 33 chr3 223488677 223489075 -4035503 + L1M4 LINE L1 5352 5750 -428 353 203 0 0 chr3 223489069 223489143 -4035435 + L1MB8 LINE L1 5646 5719 -459 * 1795 164 105 23 chr3 223489243 223489670 -4034908 + L1MB8 LINE L1 5717 6178 0 360 288 239 28 chr3 223490015 223490300 -4034278 - L2 LINE L2 -2 3270 2926 182 306 220 29 chr3 223490346 223490519 -4034059 - L2 LINE L2 -475 2839 2634 271 280 40 40 chr3 223490867 223490967 -4033611 + MIR3 SINE MIR 105 204 -4 1936 130 4 7 chr3 223491132 223491402 -4033176 - AluJb SINE Alu -38 274 6 312 224 106 35 chr3 223492392 223492477 -4032101 + L2 LINE L2 3168 3258 -14 204 40 0 0 chr3 223492488 223492513 -4032065 + (TGAA)n Simple_repeat Simple_repeat 3 27 0 496 115 0 0 chr3 223492874 223492952 -4031626 + Alu SINE Alu 233 310 0 2757 223 88 22 chr3 223492952 223494227 -4030351 + Charlie2a DNA MER1_type 890 2301 -561 247 105 0 0 chr3 223494229 223494267 -4030311 - MER51A LTR ERV1 -596 38 1 645 102 0 10 chr3 223494407 223494505 -4030073 + (GGA)n Simple_repeat Simple_repeat 3 99 0 2302 88 3 3 chr3 223494746 223495059 -4029519 + AluSq SINE Alu 1 313 0 373 320 127 58 chr3 223495226 223495676 -4028902 + L1 LINE L1 2915 3395 -2751 3350 149 38 15 chr3 223496409 223497014 -4027564 - MER50 LTR ERV1 -115 619 1 21 0 0 0 chr3 223498108 223498129 -4026449 + AT_rich Low_complexity Low_complexity 1 21 0 314 123 18 0 chr3 223498169 223498226 -4026352 + L1ME3A LINE L1 6113 6170 0 366 246 51 0 chr3 223498381 223498499 -4026079 - L1MC4 LINE L1 -124 7918 7795 405 198 0 0 chr3 223498604 223498695 -4025883 + (CA)n Simple_repeat Simple_repeat 2 92 0 2883 133 23 0 chr3 223498695 223499065 -4025513 - L1MA8 LINE L1 -301 5990 5605 2534 54 0 42 chr3 223499065 223499378 -4025200 - AluY SINE Alu -11 300 1 2883 133 23 0 chr3 223499378 223499487 -4025091 - L1MA8 LINE L1 -686 5605 5500 1575 77 4 73 chr3 223499488 223499721 -4024857 - AluSq SINE Alu -3 310 94 322 219 86 29 chr3 223499987 223500092 -4024486 + MER5B DNA MER1_type 6 116 -62 2217 93 0 30 chr3 223500677 223500977 -4023601 + AluSx SINE Alu 1 291 -21 195 42 0 0 chr3 223500977 223501001 -4023577 + (TA)n Simple_repeat Simple_repeat 2 25 0 248 200 78 0 chr3 223501141 223501231 -4023347 - L1MC/D LINE L1 -2299 5509 5413 238 333 0 0 chr3 223501243 223501327 -4023251 - MIR3 SINE MIR -5 203 120 185 0 40 0 chr3 223501363 223501388 -4023190 + (TA)n Simple_repeat Simple_repeat 1 26 0 * 216 0 0 0 chr3 223501387 223501411 -4023167 + (GA)n Simple_repeat Simple_repeat 2 25 0 256 277 84 0 chr3 223501639 223501722 -4022856 - L1MC/D LINE L1 -1934 5874 5785 838 207 169 16 chr3 223501836 223502123 -4022455 - MLT1F LTR MaLR -116 426 121 * 2045 202 167 18 chr3 223502122 223502745 -4021833 + MER50 LTR ERV1 10 725 -9 447 264 33 8 chr3 223502760 223502881 -4021697 - MLT1F LTR MaLR -418 124 1 1970 91 4 0 chr3 223502984 223503259 -4021319 - AluSx SINE Alu 0 315 40 335 314 80 0 chr3 223503318 223503455 -4021123 - MIR3 SINE MIR -56 152 5 474 309 84 5 chr3 223503690 223503881 -4020697 + MIR SINE MIR 23 228 -34 345 47 0 0 chr3 223504260 223504303 -4020275 + (TGAA)n Simple_repeat Simple_repeat 2 44 0 2310 86 7 0 chr3 223504314 223504606 -4019972 + AluSp SINE Alu 1 294 -19 191 360 13 0 chr3 223506546 223506621 -4017957 + MIR3 SINE MIR 90 165 -43 231 282 70 0 chr3 223507673 223507744 -4016834 + L1ME3A LINE L1 6068 6143 -27 191 303 0 0 chr3 223510488 223510577 -4014001 - MIR SINE MIR -61 147 59 297 321 202 0 chr3 223511986 223512179 -4012399 + MIR SINE MIR 15 246 -16 638 214 177 16 chr3 223512249 223512492 -4012086 - LTR16A LTR ERVL -4 446 165 707 159 19 57 chr3 223512628 223512659 -4011919 - MER5A DNA MER1_type -32 157 126 2253 111 10 0 chr3 223512659 223512965 -4011613 + AluSx SINE Alu 1 309 -3 707 159 19 57 chr3 223512965 223513090 -4011488 - MER5A DNA MER1_type -63 126 7 318 268 63 63 chr3 223513082 223513224 -4011354 - MIR3 SINE MIR -37 171 30 * 436 288 60 27 chr3 223513892 223514076 -4010502 - MIR3 SINE MIR -2 206 17 339 333 150 0 chr3 223515053 223515320 -4009258 - L1MC4 LINE L1 -573 7469 7163 369 190 25 123 chr3 223515407 223515570 -4009008 - MER5B DNA MER1_type -3 175 29 255 230 42 110 chr3 223515601 223515792 -4008786 - L2 LINE L2 -547 2767 2590 2322 85 3 0 chr3 223516337 223516646 -4007932 + AluSx SINE Alu 1 310 0 251 133 17 50 chr3 223517643 223517703 -4006875 + MIR SINE MIR 82 139 -69 314 208 160 0 chr3 223517892 223517998 -4006580 + MIR SINE MIR 26 148 -60 1799 143 37 11 chr3 223518990 223519263 -4005315 - AluJo SINE Alu -32 280 1 5679 86 24 11 chr3 223519509 223520733 -4003845 + L1PB2 LINE L1 4921 6149 -2 231 315 62 56 chr3 223520810 223520988 -4003590 - MLT1J LTR MaLR -42 469 291 2007 103 4 0 chr3 223521088 223521340 -4003238 - AluSx SINE Alu -59 253 1 901 245 91 44 chr3 223521341 223521865 -4002713 - MER21B LTR ERV1 -144 719 100 472 231 10 32 chr3 223521839 223522001 -4002577 - MER21B LTR ERV1 -407 198 2 * 297 308 45 8 chr3 223522002 223522135 -4002443 - LTR33 LTR ERVL -383 138 1 184 281 78 0 chr3 223522434 223522498 -4002080 + L2 LINE L2 2600 2668 -646 456 304 8 115 chr3 223522850 223523215 -4001363 - L2 LINE L2 -16 3256 2931 208 213 16 49 chr3 223523304 223523365 -4001213 + L2 LINE L2 3214 3272 0 604 259 129 0 chr3 223525399 223525569 -3999009 - MIR SINE MIR -24 238 47 2324 108 3 0 chr3 223526290 223526597 -3997981 - AluSp SINE Alu -5 308 1 427 265 0 34 chr3 223526916 223527033 -3997545 - L3 LINE CR1 -72 1505 1393 185 265 0 0 chr3 223527180 223527229 -3997349 - MIR3 SINE MIR -27 181 133 595 294 48 28 chr3 223527287 223527535 -3997043 - MIR SINE MIR -2 260 8 3919 137 7 62 chr3 223528379 223529110 -3995468 + LTR8 LTR ERV1 1 691 0 1871 182 9 17 chr3 223529375 223529721 -3994857 - MER7A DNA MER2_type -5 341 1 555 298 65 23 chr3 223529802 223530064 -3994514 - L1MC/D LINE L1 -2221 5587 5315 545 231 27 41 chr3 223530359 223530506 -3994072 - L1MCc LINE L1 -5490 933 789 367 351 82 4 chr3 223530703 223530948 -3993630 - L1MCc LINE L1 -5877 546 283 282 263 88 0 chr3 223531016 223531096 -3993482 + MLT1J LTR MaLR 99 185 -326 448 219 23 55 chr3 223531214 223531342 -3993236 + MLT1J2 LTR MaLR 321 444 -6 305 338 199 9 chr3 223532061 223532277 -3992301 - L3 LINE CR1 -66 1511 1255 1340 172 134 30 chr3 223533895 223534163 -3990415 + AluJb SINE Alu 1 296 -16 554 14 0 0 chr3 223534798 223534869 -3989709 + L1PA4 LINE L1 6083 6153 -2 234 290 52 73 chr3 223535350 223535500 -3989078 + MIR3 SINE MIR 8 152 -69 339 205 60 0 chr3 223535642 223535724 -3988854 - MLT1D LTR MaLR -2 503 417 1833 187 91 39 chr3 223535724 223536184 -3988394 - LTR2B LTR ERV1 0 490 7 623 244 80 41 chr3 223536190 223536546 -3988032 - MLT1D LTR MaLR -90 377 1 371 282 55 31 chr3 223536622 223536785 -3987793 - MIR SINE MIR -50 212 46 265 299 28 9 chr3 223537220 223537327 -3987251 + L3 LINE CR1 1439 1547 -30 508 295 106 1 chr3 223537471 223537864 -3986714 - LTR16B LTR ERVL 0 464 1 865 204 64 43 chr3 223537866 223538117 -3986461 + L1ME3 LINE L1 5911 6162 -2 205 219 0 0 chr3 223538916 223538957 -3985621 - L2 LINE L2 -2 3270 3230 199 325 48 58 chr3 223540699 223540887 -3983691 - L3 LINE CR1 -19 1558 1373 200 347 85 23 chr3 223541052 223541228 -3983350 - L3 LINE CR1 -200 1377 1191 1372 134 20 0 chr3 223541973 223542174 -3982404 + AluJb SINE Alu 105 309 -3 686 276 106 13 chr3 223542569 223543001 -3981577 - L1MEd LINE L1 -2741 3388 2929 747 310 101 70 chr3 223543014 223543251 -3981327 - L1MEd LINE L1 -5273 846 618 644 197 8 8 chr3 223543251 223543373 -3981205 - FLAM_A SINE Alu -11 122 1 747 310 101 70 chr3 223543373 223543915 -3980663 - L1MEd LINE L1 -5501 618 43 2318 96 0 0 chr3 223544422 223544713 -3979865 - AluSg1 SINE Alu -18 291 1 529 239 63 50 chr3 223545892 223546051 -3978527 - L3 LINE CR1 -1 1576 1416 226 226 113 75 chr3 223546606 223546712 -3977866 - MLT1I LTR MaLR -4 405 296 243 0 0 0 chr3 223546767 223546794 -3977784 + (TTTG)n Simple_repeat Simple_repeat 2 28 0 2096 132 0 10 chr3 223546796 223547085 -3977493 - AluSp SINE Alu -27 286 1 922 18 0 0 chr3 223547926 223548039 -3976539 - L1PA5 LINE L1 -140 6014 5902 324 373 20 33 chr3 223548646 223548799 -3975779 - L2 LINE L2 -1 3271 3121 284 207 24 12 chr3 223548876 223548958 -3975620 - L1M4 LINE L1 -1301 4845 4763 1842 148 33 30 chr3 223548971 223549276 -3975302 - AluJo SINE Alu -6 306 1 272 83 0 0 chr3 223549279 223549315 -3975263 - Alu SINE Alu -264 38 3 231 184 0 0 chr3 223549320 223549358 -3975220 - Alu SINE Alu -264 38 1 557 219 7 22 chr3 223550148 223550285 -3974293 - MLT1J1 LTR MaLR -278 168 34 238 250 62 16 chr3 223551341 223551405 -3973173 - MER91C DNA MER1_type -13 127 61 687 280 42 9 chr3 223551875 223552110 -3972468 - MIR SINE MIR -11 251 13 336 339 47 8 chr3 223552444 223552571 -3972007 - L2 LINE L2 0 3313 3182 307 269 56 0 chr3 223552634 223552742 -3971836 - MER5A DNA MER1_type -72 117 4 241 228 25 63 chr3 223553010 223553089 -3971489 + MIR3 SINE MIR 133 208 0 410 320 87 7 chr3 223553147 223553297 -3971281 - MIR3 SINE MIR -31 177 16 343 319 65 38 chr3 223555835 223556020 -3968558 - MIR3 SINE MIR -1 207 18 382 272 77 101 chr3 223556854 223557141 -3967437 + L2 LINE L2 2993 3272 0 575 300 82 7 chr3 223557600 223557880 -3966698 + L1M4 LINE L1 5354 5654 -516 722 187 37 0 chr3 223557920 223558054 -3966524 - MER5A DNA MER1_type -50 139 1 259 306 45 0 chr3 223558060 223558194 -3966384 + L1M4 LINE L1 5670 5809 -375 2242 90 0 30 chr3 223558316 223558617 -3965961 - AluSc SINE Alu -17 292 1 311 171 214 8 chr3 223558912 223559029 -3965549 - L1ME4a LINE L1 -12 6109 5969 299 301 111 15 chr3 223559038 223559237 -3965341 - L1ME4a LINE L1 -194 5927 5710 747 231 52 4 chr3 223559744 223559973 -3964605 - L1MB7 LINE L1 0 6184 5945 492 289 57 20 chr3 223561662 223561877 -3962701 - MIR SINE MIR -39 223 2 252 267 41 34 chr3 223562376 223562522 -3962056 + Charlie2 DNA MER1_type 1 147 -2715 246 32 0 0 chr3 223562729 223562760 -3961818 + (ATG)n Simple_repeat Simple_repeat 2 32 0 2241 120 0 0 chr3 223563508 223563808 -3960770 - AluSc SINE Alu -9 300 1 847 246 119 33 chr3 223564005 223564440 -3960138 + MLT1H LTR MaLR 1 526 -23 478 299 113 34 chr3 223564498 223564852 -3959726 + MLT1J2 LTR MaLR 51 432 -18 489 275 57 52 chr3 223564885 223565103 -3959475 - MIR SINE MIR -39 223 5 268 196 69 98 chr3 223565096 223565198 -3959380 + MIR3 SINE MIR 110 208 0 * 232 261 14 14 chr3 223565628 223565697 -3958881 - MIR SINE MIR -72 136 68 251 254 146 108 chr3 223566026 223566156 -3958422 + MIR3 SINE MIR 42 176 -32 339 253 69 35 chr3 223566210 223566297 -3958281 - L1MC4 LINE L1 -1340 6702 6613 2344 102 0 0 chr3 223566305 223566599 -3957979 - AluSq SINE Alu -19 294 1 355 297 8 16 chr3 223567057 223567185 -3957393 - MLT1K LTR MaLR -3 585 459 2253 92 0 16 chr3 223567648 223567962 -3956616 + AluSc SINE Alu 1 309 0 332 146 140 55 chr3 223568440 223568604 -3955974 - LTR50 LTR ERVL -557 238 61 326 289 0 0 chr3 223569095 223569171 -3955407 + MIR SINE MIR 56 131 -131 506 298 165 0 chr3 223570605 223570793 -3953785 + MIR SINE MIR 20 238 -24 1017 212 120 64 chr3 223570832 223571290 -3953288 - MLT1D LTR MaLR -2 465 3 509 293 29 34 chr3 223571340 223571498 -3953080 - LTR16A1 LTR ERVL -1 456 298 1628 208 9 82 chr3 223571498 223571925 -3952653 + MSTD LTR MaLR 1 396 0 509 293 29 34 chr3 223571925 223571971 -3952607 - LTR16A1 LTR ERVL -159 298 253 26 50 0 0 chr3 223572134 223572174 -3952404 + AT_rich Low_complexity Low_complexity 1 40 0 755 269 44 22 chr3 223572386 223572817 -3951761 - L1ME LINE L1 -505 5642 5202 290 301 98 0 chr3 223572893 223573066 -3951512 - L1ME LINE L1 -1045 5084 4895 363 311 57 40 chr3 223573073 223573250 -3951328 - L1ME LINE L1 -1299 4830 4651 504 283 66 14 chr3 223573256 223573514 -3951064 + MLT1L LTR MaLR 316 614 -1 238 278 98 6 chr3 223573517 223573690 -3950888 - L1ME LINE L1 -3846 2283 2095 296 48 24 0 chr3 223574027 223574069 -3950509 + (ATG)n Simple_repeat Simple_repeat 2 44 0 2185 150 25 33 chr3 223574113 223574506 -3950072 + MLT1B LTR MaLR 1 390 0 2303 99 7 0 chr3 223574861 223575153 -3949425 - AluSg SINE Alu -16 294 1 352 349 20 7 chr3 223575220 223575369 -3949209 - HAL1 LINE L1 -928 1579 1429 504 278 115 26 chr3 223575372 223575695 -3948883 - L1MEd LINE L1 -4857 1257 930 2332 104 7 0 chr3 223575752 223576061 -3948517 - AluSx SINE Alu -1 311 1 389 333 74 74 chr3 223576178 223576625 -3947953 - L1MEd LINE L1 -5393 726 280 874 255 61 0 chr3 223576663 223576910 -3947668 + L1ME1 LINE L1 5897 6158 -8 270 0 0 0 chr3 223577855 223577885 -3946693 + (TG)n Simple_repeat Simple_repeat 1 30 0 252 0 0 0 chr3 223577884 223577912 -3946666 + (GA)n Simple_repeat Simple_repeat 1 28 0 * 509 303 80 11 chr3 223577913 223578088 -3946490 - MIR3 SINE MIR -19 189 3 537 229 36 14 chr3 223578518 223578658 -3945920 - MER97a DNA MER1_type? -731 163 21 2317 107 0 13 chr3 223579226 223579535 -3945043 + AluSx SINE Alu 1 305 -7 1417 257 50 16 chr3 223581320 223581759 -3942819 - MLT1F LTR MaLR -87 455 2 280 278 40 134 chr3 223582163 223582761 -3941817 - LTR67 LTR ERVL -6 551 10 3855 187 31 18 chr3 223582959 223583808 -3940770 + L1MB7 LINE L1 5273 6132 -52 579 314 28 14 chr3 223583972 223584259 -3940319 - L1ME4a LINE L1 -267 5854 5564 374 122 54 0 chr3 223584523 223584597 -3939981 + HAL1 LINE L1 82 159 -2348 422 317 57 38 chr3 223584695 223584957 -3939621 - L1ME4a LINE L1 -1722 4424 4158 459 233 8 0 chr3 223585423 223585528 -3939050 + MER5A DNA MER1_type 4 109 -80 201 218 0 0 chr3 223585719 223585797 -3938781 + GA-rich Low_complexity Low_complexity 2 79 0 191 286 29 57 chr3 223586173 223586243 -3938335 + MIR SINE MIR 81 148 -114 340 255 20 39 chr3 223587027 223587129 -3937449 - MER5A DNA MER1_type -77 112 13 1078 281 73 93 chr3 223587488 223587641 -3936937 + HAL1 LINE L1 884 1039 -1468 2335 90 0 0 chr3 223587641 223587931 -3936647 + AluSc SINE Alu 1 290 -19 1078 281 73 93 chr3 223587931 223588562 -3936016 + HAL1 LINE L1 1039 1652 -855 1240 240 29 54 chr3 223588587 223588995 -3935583 - MLT1D LTR MaLR -2 503 106 627 183 78 28 chr3 223588989 223589131 -3935447 - MLT1D LTR MaLR -338 167 19 * 187 53 26 26 chr3 223589240 223589278 -3935300 + (CAAA)n Simple_repeat Simple_repeat 3 40 0 2240 113 3 3 chr3 223589281 223589582 -3934996 + AluSx SINE Alu 1 301 -11 2780 199 11 35 chr3 223589644 223590212 -3934366 - MLT2B3 LTR ERVL 0 554 1 320 307 65 26 chr3 223590385 223590538 -3934040 + HAL1b LINE L1 750 908 -440 307 258 25 25 chr3 223590597 223590717 -3933861 + HAL1b LINE L1 787 906 -442 2249 132 0 0 chr3 223590727 223591037 -3933541 + AluSq SINE Alu 1 310 -3 21 0 0 0 chr3 223591054 223591075 -3933503 + AT_rich Low_complexity Low_complexity 1 21 0 242 330 151 25 chr3 223591347 223591665 -3932913 + L3 LINE CR1 1103 1460 -117 434 314 28 76 chr3 223591687 223591955 -3932623 + MIR SINE MIR 5 262 0 2196 101 3 10 chr3 223593774 223594071 -3930507 + AluSq SINE Alu 1 295 -18 298 259 35 12 chr3 223594079 223594164 -3930414 - MIR SINE MIR -125 137 51 260 317 100 17 chr3 223594450 223594570 -3930008 + MIR SINE MIR 15 144 -118 2202 120 7 0 chr3 223594839 223595147 -3929431 - AluSx SINE Alu -2 310 1 201 39 0 0 chr3 223595253 223595279 -3929299 + (CA)n Simple_repeat Simple_repeat 2 27 0 460 301 36 6 chr3 223595348 223595514 -3929064 + MIR SINE MIR 14 184 -78 2000 105 7 51 chr3 223595974 223596296 -3928282 - AluY SINE Alu 0 309 1 337 299 11 81 chr3 223597631 223597805 -3926773 + L3 LINE CR1 1415 1576 -1 824 150 0 8 chr3 223598257 223598384 -3926194 - FLAM_A SINE Alu -7 126 1 2300 88 0 7 chr3 223598555 223598850 -3925728 - AluSg SINE Alu -17 293 1 2474 74 0 0 chr3 223599000 223599311 -3925267 - AluY SINE Alu 0 311 1 1312 88 0 0 chr3 223599754 223599924 -3924654 + MLT2A1 LTR ERVL 275 444 0 260 53 26 0 chr3 223600427 223600465 -3924113 + (GA)n Simple_repeat Simple_repeat 1 39 0 921 140 17 6 chr3 223601559 223601737 -3922841 + CT-rich Low_complexity Low_complexity 1 180 0 221 125 0 0 chr3 223601737 223601769 -3922809 + (TCCC)n Simple_repeat Simple_repeat 2 33 0 1974 105 67 0 chr3 223601773 223602058 -3922520 - AluSg SINE Alu -6 304 1 427 292 27 55 chr3 223602060 223602279 -3922299 - MIR SINE MIR -48 214 2 208 189 0 0 chr3 223602773 223602810 -3921768 + T-rich Low_complexity Low_complexity 5 180 0 2334 103 6 0 chr3 223602810 223603122 -3921456 - AluSq SINE Alu 0 351 1 312 287 91 23 chr3 223603355 223603620 -3920958 - MLT1J2 LTR MaLR -17 433 151 2002 173 40 8 chr3 223603645 223604016 -3920562 + MLT1B LTR MaLR 8 390 0 803 107 102 79 chr3 223604259 223604312 -3920266 - MLT1B LTR MaLR -70 320 270 2408 103 0 0 chr3 223604312 223604623 -3919955 - AluSq SINE Alu -2 311 1 803 107 102 79 chr3 223604623 223604746 -3919832 - MLT1B LTR MaLR -120 270 140 484 195 38 130 chr3 223605499 223605684 -3918894 - MLT1J2 LTR MaLR 0 450 283 386 308 129 12 chr3 223605751 223605991 -3918587 - MLT1J2 LTR MaLR -162 288 21 1366 278 31 10 chr3 223606037 223606425 -3918153 + LTR16A LTR ERVL 5 400 -50 913 144 0 0 chr3 223606425 223606550 -3918028 + FLAM_C SINE Alu 1 125 -18 27 29 0 0 chr3 223606550 223606584 -3917994 + AT_rich Low_complexity Low_complexity 1 34 0 272 219 0 31 chr3 223606587 223606651 -3917927 + LTR16A LTR ERVL 389 450 0 229 288 55 0 chr3 223606711 223606784 -3917794 + L2 LINE L2 3217 3293 -20 857 136 30 15 chr3 223606795 223606927 -3917651 + FLAM_C SINE Alu 1 134 -9 808 102 42 0 chr3 223608981 223609099 -3915479 + AluJb SINE Alu 1 123 -189 1071 148 0 0 chr3 223609198 223609360 -3915218 + AluSg/x SINE Alu 139 300 -10 2339 86 3 19 chr3 223609657 223609972 -3914606 + AluSx SINE Alu 1 310 -2 495 303 0 0 chr3 223610067 223610364 -3914214 + GA-rich Low_complexity Low_complexity 1 297 0 2304 59 0 49 chr3 223610495 223610627 -3913951 - MER41A LTR ERV1 -246 308 171 2358 100 0 0 chr3 223610627 223610928 -3913650 - AluSg SINE Alu -9 301 1 2304 59 0 49 chr3 223610928 223611119 -3913459 - MER41A LTR ERV1 -383 171 1 3322 235 40 39 chr3 223611119 223613451 -3911127 + L1MCa LINE L1 1224 3886 -2540 468 171 11 0 chr3 223613447 223613535 -3911043 + L1MC3 LINE L1 7628 7716 -69 * 1881 184 0 3 chr3 223613535 223613839 -3910739 - AluJb SINE Alu -9 303 1 25 0 0 0 chr3 223613842 223613867 -3910711 + AT_rich Low_complexity Low_complexity 1 25 0 8582 247 54 38 chr3 223613871 223614972 -3909606 + L1MEc LINE L1 1587 2669 -3546 2294 75 3 7 chr3 223614972 223615266 -3909312 - AluSc SINE Alu -16 293 1 8582 247 54 38 chr3 223615266 223615915 -3908663 + L1MEc LINE L1 2669 3306 -2909 198 0 0 0 chr3 223615915 223615937 -3908641 + (TA)n Simple_repeat Simple_repeat 2 23 0 8582 247 54 38 chr3 223615937 223616074 -3908504 + L1MEc LINE L1 3306 3439 -2776 1796 157 15 55 chr3 223616074 223616399 -3908179 - AluJo SINE Alu 0 312 1 8582 247 54 38 chr3 223616399 223618196 -3906382 + L1MEc LINE L1 3439 5291 -924 5377 48 3 3 chr3 223618486 223619138 -3905440 - L1PA7 LINE L1 0 6154 5503 225 269 0 0 chr3 223619407 223619459 -3905119 + MLT1L LTR MaLR 174 225 -390 2198 99 0 13 chr3 223619890 223620192 -3904386 - AluSc SINE Alu -9 300 3 210 247 165 12 chr3 223621650 223621735 -3902843 + MIR SINE MIR 47 144 -118 333 68 0 0 chr3 223622199 223622243 -3902335 + (CA)n Simple_repeat Simple_repeat 1 44 0 281 273 0 0 chr3 223622476 223622542 -3902036 - MIR SINE MIR -111 97 32 2365 95 0 3 chr3 223622681 223622976 -3901602 - AluSg SINE Alu -16 294 1 3613 197 15 73 chr3 223623660 223624534 -3900044 + MER99 DNA DNA 4 826 -2 404 236 209 0 chr3 223624566 223624714 -3899864 + MIR SINE MIR 15 193 -69 184 247 94 24 chr3 223624728 223624813 -3899765 + MIR SINE MIR 169 259 -3 4490 179 74 26 chr3 223624846 223625193 -3899385 - Charlie5 DNA MER1_type -1 2623 2294 3861 97 9 0 chr3 223625193 223625730 -3898848 + L1PA13 LINE L1 5622 6163 0 4490 179 74 26 chr3 223625730 223626438 -3898140 - Charlie5 DNA MER1_type -330 2294 1517 252 285 52 139 chr3 223627619 223627886 -3896692 + L2 LINE L2 3004 3247 -25 1416 172 27 98 chr3 223627930 223628317 -3896261 + MLT1A1 LTR MaLR 1 368 -7 1582 160 65 23 chr3 223628318 223628596 -3895982 + L1MC1 LINE L1 5997 6291 -42 2470 134 33 28 chr3 223628596 223629022 -3895556 + MSTA LTR MaLR 1 428 0 1582 160 65 23 chr3 223629022 223629050 -3895528 + L1MC1 LINE L1 6291 6316 -17 834 200 30 55 chr3 223629051 223629251 -3895327 + AluJo SINE Alu 112 306 -6 280 281 46 11 chr3 223629265 223629394 -3895184 - MIR SINE MIR -68 140 18 2619 195 117 8 chr3 223629990 223630612 -3893966 - Charlie5 DNA MER1_type -754 1858 1169 2268 123 27 35 chr3 223630612 223630979 -3893599 - THE1B LTR MaLR 0 364 1 * 2313 177 50 13 chr3 223630979 223631507 -3893071 - Charlie5 DNA MER1_type -1437 1175 628 476 346 71 36 chr3 223631507 223631816 -3892762 - MLT1K LTR MaLR -158 430 111 254 278 5 134 chr3 223631824 223632033 -3892545 - L2 LINE L2 -181 3091 2910 18425 155 25 11 chr3 223632438 223638823 -3885755 + L1PB1 LINE L1 35 6508 -359 338 211 0 22 chr3 223638823 223638913 -3885665 + (CATA)n Simple_repeat Simple_repeat 2 89 0 2459 123 3 3 chr3 223638921 223639278 -3885300 + L1PB1 LINE L1 6510 6866 -1 1856 236 75 57 chr3 223639298 223640035 -3884543 - HAL1 LINE L1 -13 2494 1670 2880 13 0 0 chr3 223640035 223640342 -3884236 + AluYa5 SINE Alu 1 307 -4 1856 236 75 57 chr3 223640342 223640559 -3884019 - HAL1 LINE L1 -837 1670 1458 2182 178 59 10 chr3 223640726 223640764 -3883814 - MLT2B3 LTR ERVL 0 554 519 452 18 18 0 chr3 223640764 223640821 -3883757 + (TAGA)n Simple_repeat Simple_repeat 2 59 0 2182 178 59 10 chr3 223640821 223641186 -3883392 - MLT2B3 LTR ERVL -35 519 131 3729 239 96 43 chr3 223641189 223641788 -3882790 - HAL1 LINE L1 -1072 1435 870 1687 172 0 28 chr3 223641788 223642078 -3882500 + AluJb SINE Alu 1 282 -30 3729 239 96 43 chr3 223642078 223642758 -3881820 - HAL1 LINE L1 -1637 870 76 1770 159 28 7 chr3 223642758 223643048 -3881530 - AluJb SINE Alu -16 296 1 3729 239 96 43 chr3 223643048 223643127 -3881451 - HAL1 LINE L1 -2431 76 3 2080 135 0 3 chr3 223643213 223643509 -3881069 + AluSg SINE Alu 1 295 -15 825 264 98 42 chr3 223643727 223643801 -3880777 + MLT1L LTR MaLR 181 249 -366 2334 97 0 0 chr3 223643801 223644099 -3880479 - AluSg1 SINE Alu -11 298 1 825 264 98 42 chr3 223644099 223644430 -3880148 + MLT1L LTR MaLR 249 609 -6 611 271 13 71 chr3 223644967 223645192 -3879386 + MIR SINE MIR 51 262 0 1794 148 0 50 chr3 223645917 223646103 -3878475 - AluJb SINE Alu 0 350 156 2576 116 11 3 chr3 223646103 223646464 -3878114 + THE1B LTR MaLR 1 364 0 10220 112 36 27 chr3 223646464 223648031 -3876547 + THE1B-int LTR MaLR 1 1580 0 1978 187 22 8 chr3 223648032 223648390 -3876188 + THE1B LTR MaLR 2 364 0 1794 148 0 50 chr3 223648390 223648565 -3876013 - AluJb SINE Alu -192 158 1 1095 194 5 22 chr3 223649044 223649266 -3875312 - AluJo SINE Alu 0 312 95 263 326 0 0 chr3 223649857 223649946 -3874632 + MIR3 SINE MIR 113 201 -7 408 237 36 36 chr3 223650783 223650922 -3873656 + LTR67 LTR ERVL 418 556 -1 364 356 9 0 chr3 223651669 223651784 -3872794 - L2 LINE L2 -1 3312 3197 711 132 195 13 chr3 223652064 223652223 -3872355 + MER53 DNA DNA 1 188 -1 21 36 0 0 chr3 223654554 223654582 -3869996 + AT_rich Low_complexity Low_complexity 1 28 0 339 85 0 0 chr3 223654776 223654823 -3869755 + (TG)n Simple_repeat Simple_repeat 1 47 0 443 296 41 24 chr3 223654854 223655023 -3869555 + MIR SINE MIR 15 186 -76 246 260 32 106 chr3 223655195 223655346 -3869232 - MIR3 SINE MIR -96 112 5 1821 148 28 21 chr3 223655490 223655780 -3868798 - AluJo SINE Alu -20 292 1 235 264 14 107 chr3 223656513 223656653 -3867925 - L2 LINE L2 -179 3093 2967 267 262 0 0 chr3 223657130 223657191 -3867387 + (CA)n Simple_repeat Simple_repeat 2 62 0 440 322 66 30 chr3 223658976 223659327 -3865251 + L3 LINE CR1 958 1364 -213 2194 118 3 16 chr3 223660473 223660788 -3863790 - AluSx SINE Alu -1 311 1 1881 165 3 3 chr3 223660798 223661095 -3863483 - AluJb SINE Alu -15 297 1 484 283 81 6 chr3 223661320 223661493 -3863085 + MIR SINE MIR 67 252 -10 180 125 0 0 chr3 223662192 223662224 -3862354 + (TCCC)n Simple_repeat Simple_repeat 2 33 0 205 299 19 25 chr3 223663250 223663358 -3861220 + MIR SINE MIR 107 212 -50 260 313 45 0 chr3 223663952 223664064 -3860514 - MIR3 SINE MIR -21 187 71 1335 249 48 2 chr3 223664119 223664516 -3860062 + MLT1C LTR MaLR 53 467 0 189 296 34 45 chr3 223664581 223664669 -3859909 - MIR SINE MIR -33 229 143 25 0 0 0 chr3 223664729 223664754 -3859824 + AT_rich Low_complexity Low_complexity 1 25 0 261 333 96 0 chr3 223665025 223665160 -3859418 + L2 LINE L2 1959 2106 -1208 414 134 0 0 chr3 223665160 223665227 -3859351 + (TCCCC)n Simple_repeat Simple_repeat 4 70 0 190 243 184 73 chr3 223665414 223665550 -3859028 + L2 LINE L2 2553 2703 -611 472 305 194 20 chr3 223665622 223666025 -3858553 + L2 LINE L2 2839 3311 -2 489 236 64 0 chr3 223666029 223666139 -3858439 - MIR SINE MIR -115 147 31 420 244 77 80 chr3 223666963 223667298 -3857280 + MLT1H LTR MaLR 69 549 0 956 255 84 15 chr3 223667299 223667632 -3856946 - L1ME3A LINE L1 -52 6118 5763 1103 276 54 16 chr3 223667712 223668555 -3856023 - L1ME3A LINE L1 -403 5767 4886 528 295 76 21 chr3 223668598 223668835 -3855743 + MIR SINE MIR 13 262 0 2406 104 0 0 chr3 223669906 223670213 -3854365 + AluSg SINE Alu 2 308 -2 211 143 24 0 chr3 223671488 223671530 -3853048 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 739 56 28 0 chr3 223672174 223672282 -3852296 + (TTTC)n Simple_repeat Simple_repeat 3 113 0 283 291 99 33 chr3 223672503 223672654 -3851924 - L2 LINE L2 0 3313 3153 273 29 0 0 chr3 223672884 223672918 -3851660 + (TG)n Simple_repeat Simple_repeat 2 35 0 312 282 60 17 chr3 223673275 223673392 -3851186 - MIR SINE MIR -27 235 114 205 288 55 14 chr3 223673504 223673577 -3851001 + L2 LINE L2 3150 3225 -47 229 241 0 35 chr3 223673596 223673654 -3850924 - L2 LINE L2 0 3272 3217 1891 153 3 10 chr3 223674051 223674374 -3850204 - AluJb SINE Alu 0 312 1 385 224 60 60 chr3 223674446 223674562 -3850016 + MIR3 SINE MIR 9 124 -84 310 243 10 87 chr3 223674572 223674675 -3849903 + MER5B DNA MER1_type 83 177 -1 2346 157 56 0 chr3 223674843 223675252 -3849326 + MSTB1 LTR MaLR 1 432 0 375 141 28 14 chr3 223675418 223675489 -3849089 + MER63 DNA MER1_type 669 740 -321 355 217 12 24 chr3 223675583 223675666 -3848912 + MIR SINE MIR 179 260 -2 405 286 68 15 chr3 223675990 223676123 -3848455 - MIR SINE MIR -70 192 53 2507 78 0 3 chr3 223676135 223676441 -3848137 + AluSc SINE Alu 1 305 -4 202 328 168 0 chr3 223677677 223677802 -3846776 - L3 LINE CR1 -359 1218 1073 338 287 0 9 chr3 223677806 223677914 -3846664 - MIR SINE MIR -7 255 149 480 295 52 35 chr3 223678172 223678345 -3846233 + MIR SINE MIR 20 195 -67 2095 102 7 0 chr3 223678425 223678699 -3845879 - AluSx SINE Alu -13 299 24 190 406 102 0 chr3 223678704 223678901 -3845677 - L3 LINE CR1 -1296 281 65 181 277 170 27 chr3 223679415 223679527 -3845051 - L2 LINE L2 -470 2844 2717 300 244 128 94 chr3 223679632 223679812 -3844766 + MIR3 SINE MIR 19 204 -4 371 331 165 4 chr3 223680100 223680342 -3844236 + L1M4 LINE L1 4865 5145 -1001 1920 172 0 0 chr3 223680346 223680642 -3843936 - AluSx SINE Alu -16 296 1 300 293 0 41 chr3 223681965 223682088 -3842490 - LTR67 LTR ERVL -4 553 436 459 152 0 0 chr3 223682231 223682310 -3842268 + (CCA)n Simple_repeat Simple_repeat 3 81 0 201 143 0 29 chr3 223682529 223682564 -3842014 + (GGA)n Simple_repeat Simple_repeat 3 36 0 734 189 40 7 chr3 223682801 223682949 -3841629 - MER20 DNA MER1_type -66 153 1 2486 92 0 6 chr3 223683276 223683590 -3840988 + AluSx SINE Alu 1 312 0 993 154 0 37 chr3 223683590 223683778 -3840800 + AluSg/x SINE Alu 127 308 0 249 180 0 0 chr3 223684504 223684554 -3840024 + CT-rich Low_complexity Low_complexity 3 52 0 1910 90 219 3 chr3 223684990 223685300 -3839278 + MER51B LTR ERV1 1 377 0 180 213 38 125 chr3 223685300 223685380 -3839198 - MIR SINE MIR -71 191 119 235 289 174 41 chr3 223685575 223685696 -3838882 - L2 LINE L2 -3 3269 3133 2195 109 13 3 chr3 223685886 223686190 -3838388 - AluSg SINE Alu -3 307 1 186 340 109 19 chr3 223686279 223686435 -3838143 - L2 LINE L2 -161 3111 2942 402 346 31 0 chr3 223686497 223686656 -3837922 - MIR SINE MIR -50 212 49 323 321 103 6 chr3 223687627 223687792 -3836786 - MIR SINE MIR -73 189 9 204 40 0 0 chr3 223687826 223687851 -3836727 + (CACCAT)n Simple_repeat Simple_repeat 6 30 0 227 299 15 30 chr3 223687881 223688015 -3836563 + (CAT)n Simple_repeat Simple_repeat 3 134 0 216 97 0 0 chr3 223688043 223688074 -3836504 + (CACCAT)n Simple_repeat Simple_repeat 6 36 0 233 299 5 53 chr3 223688104 223688291 -3836287 + (CAT)n Simple_repeat Simple_repeat 3 180 0 195 129 0 0 chr3 223688376 223688407 -3836171 + (CACCAT)n Simple_repeat Simple_repeat 6 36 0 229 299 15 29 chr3 223688437 223688574 -3836004 + (CAT)n Simple_repeat Simple_repeat 3 137 0 216 97 0 0 chr3 223688651 223688682 -3835896 + (CACCAT)n Simple_repeat Simple_repeat 6 36 0 236 284 8 45 chr3 223688712 223688846 -3835732 + (CACCAT)n Simple_repeat Simple_repeat 6 134 0 195 129 0 0 chr3 223688874 223688905 -3835673 + (CACCAT)n Simple_repeat Simple_repeat 6 36 0 237 65 0 0 chr3 223689045 223689076 -3835502 + (CACCAT)n Simple_repeat Simple_repeat 6 36 0 207 139 0 0 chr3 223689106 223689142 -3835436 + (CACCAT)n Simple_repeat Simple_repeat 6 41 0 522 197 19 164 chr3 223689812 223689874 -3834704 - MER5B DNA MER1_type 0 178 109 2368 112 0 0 chr3 223689874 223690178 -3834400 - AluSx SINE Alu -8 304 1 522 197 19 164 chr3 223690178 223690323 -3834255 - MER5B DNA MER1_type -69 109 1 707 315 57 87 chr3 223690690 223691195 -3833383 + L2 LINE L2 2521 3005 -267 2311 112 0 0 chr3 223691195 223691498 -3833080 - AluSc SINE Alu -6 303 1 707 315 57 87 chr3 223691498 223691653 -3832925 + L2 LINE L2 3005 3163 -109 286 331 36 36 chr3 223692428 223692567 -3832011 - L2 LINE L2 -50 3222 3084 221 139 23 0 chr3 223692584 223692627 -3831951 + (CTCA)n Simple_repeat Simple_repeat 2 45 0 207 246 62 0 chr3 223692627 223692692 -3831886 + L2 LINE L2 3204 3272 0 3199 108 21 142 chr3 223693337 223694061 -3830517 - LTR12 LTR ERV1 -133 581 1 442 222 20 0 chr3 223694239 223694338 -3830240 + MIR SINE MIR 43 143 -65 2578 62 7 0 chr3 223694574 223694881 -3829697 - AluY SINE Alu -2 309 1 246 32 0 0 chr3 223695474 223695505 -3829073 + (CA)n Simple_repeat Simple_repeat 2 32 0 204 206 0 0 chr3 223695956 223695990 -3828588 + (CACCAT)n Simple_repeat Simple_repeat 1 34 0 432 251 27 96 chr3 223696038 223696225 -3828353 - MIR SINE MIR -56 206 33 269 245 157 10 chr3 223697172 223697274 -3827304 - MIR3 SINE MIR -3 205 89 324 327 113 47 chr3 223697961 223698368 -3826210 + L2 LINE L2 2839 3272 0 1111 100 0 0 chr3 223698469 223698629 -3825949 + MER41A LTR ERV1 395 554 0 383 272 31 15 chr3 223698639 223698781 -3825797 - L1MCc LINE L1 -5216 1725 1578 1911 174 3 0 chr3 223698781 223699074 -3825504 - AluJb SINE Alu -16 296 3 383 272 31 15 chr3 223699074 223699126 -3825452 - L1MCc LINE L1 -5363 1578 1528 2076 107 47 23 chr3 223699126 223699426 -3825152 - AluSc SINE Alu 0 309 3 540 167 101 7 chr3 223699512 223699650 -3824928 + L1M4 LINE L1 4981 5131 -1015 214 103 0 52 chr3 223699652 223699710 -3824868 + (CAAAA)n Simple_repeat Simple_repeat 3 57 0 391 194 0 0 chr3 223699761 223699833 -3824745 - AluJ/FRAM SINE Alu -12 290 219 1448 112 73 0 chr3 223700287 223700492 -3824086 - AluSc SINE Alu -89 220 1 1377 183 81 9 chr3 223700493 223700827 -3823751 - L1MCc LINE L1 -4856 1566 1209 1667 150 52 9 chr3 223700827 223701306 -3823272 + LTR29 LTR ERV1 1 613 -9 337 218 11 46 chr3 223701335 223701422 -3823156 - L1MCc LINE L1 -5293 1129 1046 234 344 0 11 chr3 223701422 223701515 -3823063 + MER34C LTR ERV1 37 128 -457 1223 230 27 26 chr3 223701522 223702021 -3822557 + LTR29 LTR ERV1 137 644 0 1444 257 60 97 chr3 223702021 223702077 -3822501 - L1MCc LINE L1 -5373 1049 992 2451 96 0 0 chr3 223702077 223702380 -3822198 - AluSg SINE Alu -7 303 1 1444 257 60 97 chr3 223702380 223703045 -3821533 - L1MCc LINE L1 -5430 992 1 674 188 21 7 chr3 223703304 223703448 -3821130 - FRAM SINE Alu -30 146 1 1929 139 42 21 chr3 223703529 223703859 -3820719 - MER1B DNA MER1_type 0 337 1 1707 149 6 58 chr3 223703866 223704194 -3820384 - AluSx SINE Alu -1 311 1 930 164 7 75 chr3 223704603 223704896 -3819682 + AluSx SINE Alu 37 309 -3 354 281 0 0 chr3 223704992 223705290 -3819288 + GA-rich Low_complexity Low_complexity 1 298 0 207 242 0 0 chr3 223705463 223705562 -3819016 + GA-rich Low_complexity Low_complexity 1 99 0 1827 218 110 14 chr3 223705734 223706544 -3818034 + SATR1 Satellite Satellite 1 887 -89 985 273 192 12 chr3 223706950 223707692 -3816886 + L2 LINE L2 2369 3245 -68 418 304 84 36 chr3 223708442 223708567 -3816011 - L1M4 LINE L1 -2740 3406 3288 198 0 0 0 chr3 223708567 223708589 -3815989 + (TA)n Simple_repeat Simple_repeat 2 23 0 418 304 84 36 chr3 223708589 223708877 -3815701 - L1M4 LINE L1 -2858 3288 2973 279 239 0 26 chr3 223708899 223709054 -3815524 + C-rich Low_complexity Low_complexity 6 156 0 221 314 17 23 chr3 223709188 223709360 -3815218 + (CCCCG)n Simple_repeat Simple_repeat 3 173 0 * 249 369 6 3 chr3 223709302 223709538 -3815040 + C-rich Low_complexity Low_complexity 1 236 0 459 245 138 25 chr3 223760541 223760700 -3763878 - MIR SINE MIR 0 262 86 196 240 125 21 chr3 223760719 223760815 -3763763 - MIR3 SINE MIR -44 164 59 774 103 14 7 chr3 223761595 223761741 -3762837 + (TG)n Simple_repeat Simple_repeat 1 147 0 710 41 10 0 chr3 223761845 223761943 -3762635 + (TG)n Simple_repeat Simple_repeat 1 99 0 240 314 133 44 chr3 223761944 223762237 -3762341 - L2 LINE L2 -470 2844 2526 702 242 102 0 chr3 223762275 223762461 -3762117 - MER63A DNA MER1_type 0 210 6 194 264 99 44 chr3 223762891 223762982 -3761596 - MIR3 SINE MIR -38 170 75 2409 103 3 0 chr3 223763088 223763399 -3761179 - AluSx SINE Alu 0 312 1 298 137 78 0 chr3 223763409 223763460 -3761118 - AluJb SINE Alu -195 107 53 2017 190 44 87 chr3 223763515 223764035 -3760543 - MLT1F LTR MaLR -44 498 1 197 222 311 0 chr3 223764090 223764180 -3760398 + MIR SINE MIR 63 180 -82 739 293 56 22 chr3 223764355 223764587 -3759991 + MIR SINE MIR 7 246 -16 2276 107 0 52 chr3 223765316 223765643 -3758935 - AluSx SINE Alu 0 312 3 450 282 19 6 chr3 223765773 223765929 -3758649 + MER103 DNA DNA 2 159 -7 2155 101 4 0 chr3 223766258 223766534 -3758044 + AluSx SINE Alu 1 277 -35 341 268 51 43 chr3 223766666 223766804 -3757774 - MER91C DNA MER1_type -1 139 1 462 254 314 16 chr3 223766821 223767069 -3757509 - MER5C DNA MER1_type -1 323 2 1403 139 5 14 chr3 223767283 223767492 -3757086 - AluJb SINE Alu -105 207 1 434 276 68 21 chr3 223767773 223767965 -3756613 + L1ME LINE L1 5528 5728 -393 403 148 0 0 chr3 223767967 223768028 -3756550 + AluJb SINE Alu 82 142 -170 3826 252 115 26 chr3 223768384 223769233 -3755345 + L2 LINE L2 1428 2200 -1113 2296 114 0 3 chr3 223769233 223769541 -3755037 + AluSx SINE Alu 1 307 -5 3826 252 115 26 chr3 223769541 223770396 -3754182 + L2 LINE L2 2200 3277 -36 343 366 99 16 chr3 223770406 223770592 -3753986 - L2 LINE L2 -586 2728 2559 2396 84 20 0 chr3 223770592 223770890 -3753688 - AluSx SINE Alu -8 304 1 343 366 99 16 chr3 223770890 223771025 -3753553 - L2 LINE L2 -755 2559 2380 309 140 0 0 chr3 223771099 223771156 -3753422 + (CA)n Simple_repeat Simple_repeat 1 57 0 509 297 82 6 chr3 223771779 223771961 -3752617 + MER91A DNA MER1_type 1 196 0 356 330 45 6 chr3 223772386 223772565 -3752013 - MER117 DNA MER1_type -10 187 2 1321 101 17 0 chr3 223772826 223773005 -3751573 - AluSg SINE Alu -2 310 129 205 103 77 0 chr3 223773005 223773044 -3751534 + T-rich Low_complexity Low_complexity 4 45 0 891 84 0 0 chr3 223773044 223773151 -3751427 - AluSg SINE Alu -179 131 25 201 235 128 49 chr3 223773628 223773730 -3750848 - L2 LINE L2 -16 3297 3188 834 198 41 6 chr3 223773934 223774106 -3750472 + MER5B DNA MER1_type 1 178 0 1343 193 59 48 chr3 223774507 223774941 -3749637 - MLT1C LTR MaLR -9 458 12 1796 134 52 4 chr3 223775267 223775557 -3749021 + AluSx SINE Alu 1 303 0 306 0 0 0 chr3 223775601 223775635 -3748943 + (CA)n Simple_repeat Simple_repeat 1 34 0 444 246 186 0 chr3 223776244 223776427 -3748151 + MIR SINE MIR 31 247 -15 275 267 116 0 chr3 223776471 223776557 -3748021 + MER117 DNA MER1_type 53 148 -49 2240 190 48 14 chr3 223776663 223777105 -3747473 + LTR32 LTR ERVL 15 471 0 280 262 76 29 chr3 223777229 223777368 -3747210 + MIR SINE MIR 56 201 -61 220 283 0 0 chr3 223777844 223777897 -3746681 + MIR SINE MIR 81 133 -75 803 163 8 0 chr3 223778467 223778590 -3745988 - FLAM_C SINE Alu -18 125 2 186 241 37 0 chr3 223778850 223778904 -3745674 + MER5B DNA MER1_type 122 177 -1 186 278 0 37 chr3 223778861 223778915 -3745663 - MER5A DNA MER1_type -133 56 5 339 295 29 22 chr3 223779198 223779342 -3745236 - MIR SINE MIR -62 146 33 22 35 0 0 chr3 223779960 223779989 -3744589 + AT_rich Low_complexity Low_complexity 1 29 0 222 133 0 40 chr3 223780299 223780374 -3744204 + (TATAA)n Simple_repeat Simple_repeat 2 73 0 25 0 0 0 chr3 223780413 223780438 -3744140 + AT_rich Low_complexity Low_complexity 1 25 0 327 242 145 16 chr3 223780518 223780642 -3743936 - L1ME LINE L1 -417 5745 5606 2192 105 20 0 chr3 223781018 223781312 -3743266 + AluSq SINE Alu 1 300 -13 316 256 15 83 chr3 223781597 223781730 -3742848 + MIR SINE MIR 98 221 -41 552 216 0 0 chr3 223781770 223781872 -3742706 + Tigger3b DNA MER2_type 1 102 -1129 * 4557 136 47 72 chr3 223781870 223782201 -3742377 + Tigger3b DNA MER2_type 274 612 -2416 2116 113 3 29 chr3 223782201 223782510 -3742068 + AluSg SINE Alu 1 301 -9 4557 136 47 72 chr3 223782510 223783158 -3741420 + Tigger3b DNA MER2_type 612 1228 -3 2218 103 33 0 chr3 223783261 223783563 -3741015 - AluSq SINE Alu -1 312 1 308 252 99 0 chr3 223783658 223783769 -3740809 - L1ME LINE L1 -417 5704 5583 343 282 106 7 chr3 223783984 223784126 -3740452 + MIR3 SINE MIR 1 156 -52 2077 106 21 3 chr3 223785321 223785603 -3738975 + AluSx SINE Alu 9 295 -17 229 281 0 18 chr3 223785679 223785736 -3738842 - MER5B DNA MER1_type -3 175 120 195 289 36 24 chr3 223786730 223786813 -3737765 - MIR SINE MIR -67 141 58 2182 126 0 0 chr3 223786863 223787165 -3737413 + AluSg SINE Alu 2 303 -7 442 243 65 0 chr3 223787693 223787800 -3736778 + MLT1G3 LTR MaLR 209 322 -208 200 275 29 0 chr3 223787869 223787938 -3736640 - L2 LINE L2 -213 3059 2989 286 295 0 38 chr3 223788212 223788317 -3736261 + MIR SINE MIR 48 149 -59 1679 250 45 55 chr3 223788517 223789116 -3735462 - MLT1G1 LTR MaLR -2 593 1 326 282 3 71 chr3 223789962 223790155 -3734423 - MIR SINE MIR -62 146 16 775 276 39 99 chr3 223790204 223790719 -3733859 - L2 LINE L2 0 3313 2830 27 73 0 0 chr3 223791068 223791123 -3733455 + AT_rich Low_complexity Low_complexity 1 55 0 1745 174 18 0 chr3 223791443 223791724 -3732854 + AluJo SINE Alu 1 286 -26 336 280 40 10 chr3 223791724 223791824 -3732754 + L1MC4 LINE L1 6617 6719 -1323 236 242 101 40 chr3 223791833 223791932 -3732646 + L3 LINE CR1 1301 1405 -172 387 264 11 0 chr3 223792112 223792199 -3732379 - L2 LINE L2 -33 3239 3152 2350 103 0 3 chr3 223792566 223792876 -3731702 - AluSg SINE Alu -1 309 1 273 260 0 0 chr3 223793180 223793253 -3731325 + (CA)n Simple_repeat Simple_repeat 1 73 0 2183 103 0 20 chr3 223794173 223794474 -3730104 - AluSc SINE Alu -14 295 1 1565 180 10 39 chr3 223794476 223794781 -3729797 - AluJo SINE Alu -16 296 1 396 303 20 0 chr3 223795636 223795735 -3728843 - L2 LINE L2 -12 3260 3160 345 110 0 110 chr3 223796431 223796522 -3728056 + L1MC2 LINE L1 6264 6344 0 216 303 59 50 chr3 223796542 223796661 -3727917 + MIR SINE MIR 33 152 -56 241 261 0 0 chr3 223796822 223796868 -3727710 + L2 LINE L2 2313 2358 -956 379 277 8 8 chr3 223796871 223797143 -3727435 + GA-rich Low_complexity Low_complexity 1 272 0 391 330 0 17 chr3 223797295 223797474 -3727104 + GA-rich Low_complexity Low_complexity 3 178 0 356 284 0 22 chr3 223797523 223797802 -3726776 + GA-rich Low_complexity Low_complexity 1 272 0 245 283 0 19 chr3 223797820 223797926 -3726652 + GA-rich Low_complexity Low_complexity 3 106 0 204 240 53 41 chr3 223797861 223798032 -3726546 + (CAGAG)n Simple_repeat Simple_repeat 2 174 0 * 246 256 24 18 chr3 223798010 223798174 -3726404 + (CACAG)n Simple_repeat Simple_repeat 3 167 0 213 283 0 0 chr3 223798653 223798706 -3725872 - L2 LINE L2 -79 3193 3141 1077 223 63 28 chr3 223798794 223799256 -3725322 + L1M4c LINE L1 1984 2461 -3923 4739 155 30 19 chr3 223799309 223799611 -3724967 + Tigger1 DNA MER2_type 1465 1762 -656 2358 81 0 10 chr3 223799611 223799908 -3724670 - AluY SINE Alu -17 294 1 4739 155 30 19 chr3 223799908 223799964 -3724614 + Tigger1 DNA MER2_type 1762 1816 -602 2213 115 3 19 chr3 223799964 223800278 -3724300 - AluSc SINE Alu 0 309 1 4739 155 30 19 chr3 223800278 223800860 -3723718 + Tigger1 DNA MER2_type 1816 2416 -2 1631 224 11 0 chr3 223800863 223801238 -3723340 - L1 LINE L1 -3498 2648 2270 2235 107 0 0 chr3 223801238 223801529 -3723049 + AluSg SINE Alu 9 299 -11 415 324 17 28 chr3 223801558 223801734 -3722844 + L2 LINE L2 2834 3007 -265 276 301 117 0 chr3 223801735 223801838 -3722740 + MIR3 SINE MIR 87 201 -7 973 129 17 34 chr3 223803213 223803391 -3721187 + LTR9 LTR ERV1 438 612 0 1344 121 0 0 chr3 223803489 223803688 -3720890 + HUERS-P3 LTR ERV1 8720 8918 -1 2894 117 73 20 chr3 223803688 223804183 -3720395 + LTR9 LTR ERV1 1 521 -91 223 313 36 24 chr3 223804471 223804554 -3720024 - MIR SINE MIR -122 140 57 223 203 0 51 chr3 223804889 223804948 -3719630 + C-rich Low_complexity Low_complexity 3 58 0 547 290 55 6 chr3 223805352 223805535 -3719043 + MIR SINE MIR 21 212 -50 1430 154 32 36 chr3 223805570 223805817 -3718761 + AluSx SINE Alu 1 246 -66 538 134 0 24 chr3 223805817 223805899 -3718679 + AluJb SINE Alu 39 118 -194 360 0 0 0 chr3 223805900 223805940 -3718638 + (CA)n Simple_repeat Simple_repeat 2 41 0 892 204 0 47 chr3 223805943 223806115 -3718463 + FRAM SINE Alu 2 165 -1 237 315 0 0 chr3 223807333 223807406 -3717172 + MIR SINE MIR 32 104 -104 2353 109 6 3 chr3 223807659 223807970 -3716608 + AluSx SINE Alu 1 312 0 234 308 124 24 chr3 223808313 223808482 -3716096 - MIR SINE MIR -57 205 20 2325 98 0 3 chr3 223808830 223809127 -3715451 + AluSq SINE Alu 1 296 -17 330 335 98 0 chr3 223809592 223809756 -3714822 + L3 LINE CR1 1274 1453 -124 1902 149 0 23 chr3 223810074 223810375 -3714203 + AluJo SINE Alu 1 294 -18 877 211 10 42 chr3 223810427 223810639 -3713939 + MLT1J2 LTR MaLR 1 206 -244 692 214 107 0 chr3 223810707 223810866 -3713712 - MER58A DNA MER1_type -27 197 22 543 227 119 28 chr3 223810871 223811047 -3713531 + MLT1J2 LTR MaLR 256 447 -3 231 339 0 0 chr3 223811567 223811632 -3712946 + L2 LINE L2 3206 3270 -2 211 289 200 8 chr3 223812868 223812990 -3711588 - MIR SINE MIR -58 150 10 615 260 41 0 chr3 223814055 223814201 -3710377 + MIR3 SINE MIR 3 154 -54 390 260 135 0 chr3 223814595 223814691 -3709887 + MIR SINE MIR 19 127 -81 224 315 31 39 chr3 223814997 223815127 -3709451 - MIR3 SINE MIR -45 163 35 280 313 71 18 chr3 223815485 223815597 -3708981 - L2 LINE L2 -18 3254 3137 2036 149 3 3 chr3 223816007 223816309 -3708269 + AluSx SINE Alu 1 302 -10 2478 95 56 56 chr3 223816873 223817254 -3707324 + MSTB1 LTR MaLR 2 386 -46 2082 116 0 31 chr3 223817254 223817576 -3707002 + AluSq SINE Alu 2 314 0 2478 95 56 56 chr3 223817576 223817624 -3706954 + MSTB1 LTR MaLR 385 432 0 2470 81 3 0 chr3 223819475 223819773 -3704805 + AluSp SINE Alu 1 299 -14 297 0 0 0 chr3 223819786 223819819 -3704759 + (CA)n Simple_repeat Simple_repeat 2 34 0 21 0 0 0 chr3 223821383 223821404 -3703174 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr3 223822084 223822125 -3702453 + GC_rich Low_complexity Low_complexity 1 41 0 24 67 0 0 chr3 223823110 223823155 -3701423 + GC_rich Low_complexity Low_complexity 1 45 0 234 360 137 13 chr3 223825649 223825802 -3698776 - L2 LINE L2 -190 3082 2911 2308 89 7 0 chr3 223825807 223826116 -3698462 + AluSx SINE Alu 1 311 0 590 218 140 72 chr3 223827443 223827736 -3696842 - L2 LINE L2 -6 3307 2995 914 209 44 48 chr3 223827747 223827979 -3696599 + MER33 DNA MER1_type 1 233 -2352 1633 126 0 0 chr3 223827979 223828201 -3696377 + AluSg/x SINE Alu 85 306 -6 914 209 44 48 chr3 223828201 223828241 -3696337 + MER33 DNA MER1_type 233 272 -52 536 171 81 0 chr3 223828239 223828350 -3696228 + MLT1D LTR MaLR 373 492 -13 * 264 321 63 68 chr3 223828745 223828982 -3695596 + L2 LINE L2 2810 3045 -227 981 121 81 0 chr3 223829055 223829204 -3695374 - AluSg/x SINE Alu -18 292 132 2087 110 24 7 chr3 223829204 223829494 -3695084 - AluSg SINE Alu -15 295 1 411 320 31 8 chr3 223829514 223829642 -3694936 + L2 LINE L2 3137 3267 -5 492 242 43 91 chr3 223829686 223829872 -3694706 - MIR3 SINE MIR -12 196 20 310 346 59 20 chr3 223830414 223830567 -3694011 - MIR SINE MIR -17 245 87 527 209 78 128 chr3 223830863 223831184 -3693394 - MLT1C LTR MaLR -8 382 78 676 171 8 8 chr3 223831197 223831314 -3693264 + AluJb SINE Alu 12 128 -184 871 168 0 32 chr3 223831355 223831510 -3693068 - AluJo SINE Alu -37 275 126 189 0 0 0 chr3 223831562 223831583 -3692995 + (TAAA)n Simple_repeat Simple_repeat 2 22 0 920 317 54 15 chr3 223832516 223832923 -3691655 - L3 LINE CR1 -12 1565 1143 249 186 169 0 chr3 223833148 223833207 -3691371 + L2 LINE L2 3188 3256 -57 768 68 0 0 chr3 223833212 223833315 -3691263 + (TGAA)n Simple_repeat Simple_repeat 4 106 0 1272 111 67 0 chr3 223833701 223833909 -3690669 + L1MA6 LINE L1 6074 6295 -5 263 289 111 0 chr3 223834938 223835028 -3689550 - MIR SINE MIR -50 212 113 2333 96 0 3 chr3 223835184 223835486 -3689092 - AluSq SINE Alu -12 301 1 245 288 116 55 chr3 223835961 223836107 -3688471 + MIR3 SINE MIR 3 157 -51 524 219 169 0 chr3 223836111 223836265 -3688313 + MER5A DNA MER1_type 4 188 -1 630 124 0 50 chr3 223836307 223836428 -3688150 - L1MA8 LINE L1 -3 6288 6174 2232 106 13 0 chr3 223836455 223836756 -3687822 + AluSx SINE Alu 1 305 -7 204 337 65 0 chr3 223836796 223836888 -3687690 + MIR SINE MIR 26 123 -85 259 276 46 23 chr3 223837921 223838008 -3686570 - L2 LINE L2 -203 3069 2981 1565 191 0 53 chr3 223838828 223839131 -3685447 - AluJo SINE Alu -24 288 2 232 153 14 97 chr3 223839365 223839437 -3685141 - MER112 DNA MER1_type -183 77 12 430 308 56 0 chr3 223839457 223839600 -3684978 + MIR SINE MIR 37 187 -75 2253 104 3 3 chr3 223839979 223840278 -3684300 - AluSc SINE Alu -10 299 1 3299 143 39 28 chr3 223840572 223841221 -3683357 - L1MA9 LINE L1 -3 6309 5654 917 167 62 11 chr3 223841435 223841959 -3682619 + L1MB8 LINE L1 5433 6168 -10 207 0 0 0 chr3 223841959 223841982 -3682596 + (TA)n Simple_repeat Simple_repeat 1 23 0 2491 74 0 6 chr3 223841984 223842296 -3682282 - AluSg SINE Alu 0 310 1 2215 99 48 0 chr3 223842587 223842880 -3681698 + AluSx SINE Alu 1 307 -5 250 230 118 92 chr3 223842921 223843073 -3681505 + MER5A DNA MER1_type 7 162 -27 2244 94 7 20 chr3 223844975 223845304 -3679274 - AluSp SINE Alu 0 313 1 1870 127 72 0 chr3 223845685 223845961 -3678617 + AluSx SINE Alu 1 296 -16 728 269 82 91 chr3 223846860 223847159 -3677419 - HAL1 LINE L1 -1551 956 663 2459 71 3 0 chr3 223847159 223847455 -3677123 - AluSq SINE Alu -14 299 3 728 269 82 91 chr3 223847455 223847695 -3676883 - HAL1 LINE L1 -1844 663 422 737 212 155 10 chr3 223849527 223849720 -3674858 + MIR SINE MIR 6 226 -36 21 0 0 0 chr3 223850414 223850435 -3674143 + AT_rich Low_complexity Low_complexity 1 21 0 982 103 0 0 chr3 223850451 223850577 -3674001 - FLAM_C SINE Alu -17 126 1 21 0 0 0 chr3 223851209 223851230 -3673348 + AT_rich Low_complexity Low_complexity 1 21 0 2250 103 3 0 chr3 223851491 223851792 -3672786 + AluSp SINE Alu 1 302 -11 354 313 182 39 chr3 223851966 223852700 -3671878 - L3 LINE CR1 -53 1524 610 7543 36 6 0 chr3 223852779 223854247 -3670331 - L1PA4 LINE L1 -3 6152 4681 181 282 26 43 chr3 223854328 223854445 -3670133 - MIR SINE MIR -1 261 147 216 253 77 44 chr3 223854509 223854600 -3669978 - L3 LINE CR1 -1126 451 358 377 347 146 11 chr3 223854601 223854869 -3669709 - L3 LINE CR1 -1152 425 122 712 189 8 0 chr3 223856052 223856184 -3668394 - FLAM_C SINE Alu 0 133 1 243 213 0 13 chr3 223856189 223856264 -3668314 - L1ME4a LINE L1 -2 6119 6046 2259 111 3 0 chr3 223856408 223856705 -3667873 - AluSx SINE Alu -14 298 1 301 319 7 58 chr3 223858008 223858146 -3666432 + MIR SINE MIR 7 137 -125 208 308 0 0 chr3 223858253 223858305 -3666273 - L2 LINE L2 -8 3264 3213 193 276 26 53 chr3 223859164 223859240 -3665338 - MIR SINE MIR -103 105 32 211 306 116 48 chr3 223859309 223859456 -3665122 + MIR SINE MIR 68 224 -38 * 685 250 61 25 chr3 223859420 223859616 -3664962 - MIR SINE MIR -4 258 56 197 333 16 0 chr3 223859635 223859698 -3664880 + MIR SINE MIR 187 250 -12 450 204 0 83 chr3 223859702 223859720 -3664858 - LTR40c LTR ERVL 0 462 444 2185 131 3 3 chr3 223859720 223860032 -3664546 + AluSx SINE Alu 1 312 0 450 204 0 83 chr3 223860032 223860121 -3664457 - LTR40c LTR ERVL -18 444 364 2267 105 0 20 chr3 223860233 223860537 -3664041 - AluSx SINE Alu -14 298 1 207 0 0 0 chr3 223861840 223861863 -3662715 + (A)n Simple_repeat Simple_repeat 1 23 0 277 274 111 22 chr3 223862061 223862196 -3662382 - MIR3 SINE MIR -1 207 61 281 235 33 0 chr3 223862460 223862551 -3662027 - L1M3 LINE L1 -723 5431 5347 426 315 109 33 chr3 223862581 223862857 -3661721 - L1M3 LINE L1 -908 5238 4942 349 228 51 0 chr3 223862878 223862957 -3661621 - MIR SINE MIR -178 84 2 2330 119 0 0 chr3 223863120 223863431 -3661147 + AluSx SINE Alu 1 311 -1 223 289 132 8 chr3 223864111 223864232 -3660346 - MIR SINE MIR -1 261 126 444 250 78 0 chr3 223864246 223864318 -3660260 + MIR SINE MIR 123 188 -74 1011 31 0 0 chr3 223864318 223864445 -3660133 + (TG)n Simple_repeat Simple_repeat 2 128 0 444 250 78 0 chr3 223864445 223864500 -3660078 + MIR SINE MIR 188 260 -2 25 31 0 0 chr3 223865748 223865780 -3658798 + GC_rich Low_complexity Low_complexity 1 32 0 28 79 0 0 chr3 223865901 223865964 -3658614 + GC_rich Low_complexity Low_complexity 1 63 0 449 239 133 14 chr3 223866284 223866480 -3658098 + MIR SINE MIR 3 222 -40 249 203 72 0 chr3 223866501 223866570 -3658008 + MIR SINE MIR 59 132 -76 382 189 41 90 chr3 223866946 223867068 -3657510 - MIR SINE MIR -57 205 90 212 235 39 0 chr3 223867503 223867554 -3657024 + MIR3 SINE MIR 117 169 -39 2419 88 0 0 chr3 223869612 223869908 -3654670 - AluSx SINE Alu -16 296 1 477 302 17 23 chr3 223870465 223870637 -3653941 + L2 LINE L2 2864 3034 -279 308 111 56 0 chr3 223870641 223870695 -3653883 + AluS SINE Alu 1 57 -246 2224 117 3 7 chr3 223870786 223871094 -3653484 - AluSx SINE Alu -5 307 1 537 221 84 38 chr3 223871094 223871225 -3653353 + L2 LINE L2 3165 3301 -12 1898 104 101 0 chr3 223871593 223871861 -3652717 + AluSx SINE Alu 1 295 -17 515 275 129 17 chr3 223871885 223871908 -3652670 - MIR SINE MIR -3 259 240 1710 40 0 15 chr3 223871908 223872108 -3652470 + AluY SINE Alu 105 301 -10 515 275 129 17 chr3 223872108 223872317 -3652261 - MIR SINE MIR -22 240 1 498 271 43 7 chr3 223872357 223872497 -3652081 - MIR SINE MIR -38 224 80 189 344 110 7 chr3 223872513 223872667 -3651911 + MIR SINE MIR 13 182 -80 2329 77 0 3 chr3 223873010 223873296 -3651282 + AluSc SINE Alu 1 285 -24 311 64 0 0 chr3 223873296 223873343 -3651235 + AluSc SINE Alu 253 299 0 189 269 0 0 chr3 223873483 223873550 -3651028 - L2 LINE L2 -300 2972 2906 2098 111 31 10 chr3 223873773 223874061 -3650517 + AluSq SINE Alu 1 294 -19 1943 153 7 0 chr3 223874076 223874363 -3650215 + AluJo SINE Alu 6 294 -18 693 188 23 0 chr3 223874465 223874593 -3649985 + FLAM_C SINE Alu 2 132 -1 189 222 63 48 chr3 223874904 223874967 -3649611 - L2 LINE L2 -221 3051 2988 2277 90 7 3 chr3 223875941 223876242 -3648336 + AluSq SINE Alu 1 302 -11 2094 116 20 3 chr3 223876778 223877071 -3647507 + AluSx SINE Alu 1 298 -14 1429 179 150 38 chr3 223877375 223877747 -3646831 - MLT1C LTR MaLR -1 466 40 2226 100 7 3 chr3 223877747 223878046 -3646532 - AluSx SINE Alu -12 300 1 1429 179 150 38 chr3 223878046 223878092 -3646486 - MLT1C LTR MaLR -427 40 1 387 336 82 30 chr3 223878092 223878324 -3646254 + L2 LINE L2 3055 3298 -15 241 276 75 119 chr3 223878338 223878477 -3646101 + L3 LINE CR1 1206 1329 -248 2451 86 3 0 chr3 223878477 223878781 -3645797 - AluSx SINE Alu -7 305 1 241 276 75 119 chr3 223878781 223878909 -3645669 + L3 LINE CR1 1329 1461 -116 293 197 54 14 chr3 223880144 223880291 -3644287 + (TA)n Simple_repeat Simple_repeat 2 154 0 239 260 0 13 chr3 223880367 223880444 -3644134 + (TA)n Simple_repeat Simple_repeat 1 76 0 2231 169 36 10 chr3 223880667 223881080 -3643498 - MSTA LTR MaLR 0 428 5 274 327 125 44 chr3 223881094 223881366 -3643212 - L2 LINE L2 -3 3269 2976 1405 122 0 5 chr3 223881870 223882067 -3642511 - AluSg/x SINE Alu -5 307 112 682 261 63 54 chr3 223882157 223882438 -3642140 - MLT1C LTR MaLR -125 342 56 2247 113 0 0 chr3 223882438 223882731 -3641847 + AluSx SINE Alu 1 293 -19 682 261 63 54 chr3 223882731 223882783 -3641795 - MLT1C LTR MaLR -411 56 6 2267 91 0 36 chr3 223883513 223883822 -3640756 - AluSx SINE Alu -1 311 14 1665 146 4 11 chr3 223884083 223884343 -3640235 + AluJb SINE Alu 1 258 -54 772 109 29 0 chr3 223884492 223884629 -3639949 - MSTA LTR MaLR -283 145 5 258 331 125 44 chr3 223884643 223884915 -3639663 - L2 LINE L2 -3 3269 2976 2295 101 3 3 chr3 223885419 223885726 -3638852 - AluSx SINE Alu -5 307 1 231 116 93 0 chr3 223885729 223885772 -3638806 - MLT1C LTR MaLR -420 47 1 387 336 82 30 chr3 223885772 223886004 -3638574 + L2 LINE L2 3055 3298 -15 241 276 75 119 chr3 223886018 223886157 -3638421 + L3 LINE CR1 1206 1329 -248 2451 86 3 0 chr3 223886157 223886461 -3638117 - AluSx SINE Alu -7 305 1 241 276 75 119 chr3 223886461 223886589 -3637989 + L3 LINE CR1 1329 1461 -116 248 229 0 57 chr3 223887843 223887965 -3636613 + (TTAAA)n Simple_repeat Simple_repeat 2 116 0 239 260 0 13 chr3 223888047 223888124 -3636454 + (TA)n Simple_repeat Simple_repeat 1 76 0 1728 203 51 15 chr3 223888347 223888756 -3635822 - MSTA LTR MaLR 0 428 5 545 277 126 27 chr3 223889926 223890059 -3634519 + L1ME4a LINE L1 5720 5838 -283 2328 98 0 0 chr3 223890059 223890373 -3634205 + AluSq SINE Alu 1 314 0 545 277 126 27 chr3 223890373 223890603 -3633975 + L1ME4a LINE L1 5838 6120 -1 243 230 142 108 chr3 223891126 223891274 -3633304 + MIR3 SINE MIR 24 176 -32 2269 110 0 3 chr3 223891351 223891661 -3632917 + AluSc SINE Alu 1 309 0 320 256 137 8 chr3 223892419 223892536 -3632042 - MER5A DNA MER1_type -57 132 1 686 181 9 0 chr3 223892608 223892724 -3631854 - FLAM_C SINE Alu -16 117 1 422 256 70 50 chr3 223892856 223893055 -3631523 - AluSg/x SINE Alu -11 301 99 2245 94 0 36 chr3 223894171 223894480 -3630098 - AluSx SINE Alu -1 311 14 2339 47 43 0 chr3 223894739 223895016 -3629562 + AluY SINE Alu 1 289 -22 696 180 63 74 chr3 223895507 223895631 -3628947 + MER5A DNA MER1_type 1 125 -64 2215 96 7 0 chr3 223895631 223895952 -3628626 - AluSx SINE Alu 0 323 1 696 180 63 74 chr3 223895952 223896015 -3628563 + MER5A DNA MER1_type 125 187 -2 520 222 17 8 chr3 223896048 223896165 -3628413 + MER5B DNA MER1_type 1 118 -60 390 217 2 14 chr3 223896165 223896276 -3628302 - AluJ/FRAM SINE Alu -2 300 220 844 112 7 77 chr3 223896287 223896430 -3628148 + AluJb SINE Alu 1 133 -179 197 250 0 0 chr3 223896435 223896483 -3628095 - MER5B DNA MER1_type -129 49 2 253 111 111 48 chr3 223896814 223896877 -3627701 - L2 LINE L2 -212 3060 2994 524 235 176 64 chr3 223897024 223897381 -3627197 - MER34C LTR ERV1 -144 441 45 2099 108 49 0 chr3 223897457 223897745 -3626833 - AluSg SINE Alu -8 302 1 498 317 226 12 chr3 223898113 223898842 -3625736 + L2 LINE L2 1861 2745 -569 712 140 0 0 chr3 223898859 223898966 -3625612 + FLAM_C SINE Alu 11 117 -26 392 319 116 0 chr3 223899010 223899242 -3625336 + L2 LINE L2 2950 3208 -105 716 236 124 13 chr3 223899943 223900176 -3624402 - MIR SINE MIR 0 262 4 22 0 0 0 chr3 223900225 223900247 -3624331 + AT_rich Low_complexity Low_complexity 1 22 0 1487 155 188 19 chr3 223900302 223900670 -3623908 - MSTB1 LTR MaLR -2 430 1 2069 129 3 43 chr3 223900676 223901035 -3623543 - AluSx SINE Alu 0 346 1 438 275 0 9 chr3 223901080 223901189 -3623389 - MIR SINE MIR -136 126 19 378 246 8 42 chr3 223901906 223901969 -3622609 - MIR SINE MIR -109 153 94 2279 81 72 23 chr3 223901969 223902316 -3622262 + THE1B LTR MaLR 1 364 0 378 246 8 42 chr3 223902316 223902370 -3622208 - MIR SINE MIR -168 94 40 543 121 0 0 chr3 223902487 223902586 -3621992 + (TAGA)n Simple_repeat Simple_repeat 2 100 0 777 284 144 30 chr3 223902636 223903072 -3621506 + L1MC4a LINE L1 5520 6005 -1803 2281 120 0 0 chr3 223903539 223903840 -3620738 + AluSx SINE Alu 1 301 -11 2311 109 0 0 chr3 223903995 223904288 -3620290 + AluSx SINE Alu 1 293 -19 2455 85 0 3 chr3 223905066 223905373 -3619205 - AluSx SINE Alu -6 306 1 2057 92 25 51 chr3 223905943 223906090 -3618488 + AluSq SINE Alu 1 150 -163 2320 90 7 7 chr3 223906090 223906390 -3618188 + AluSp SINE Alu 1 300 -13 2057 92 25 51 chr3 223906390 223906557 -3618021 + AluSq SINE Alu 150 307 -6 1284 117 21 5 chr3 223906916 223907104 -3617474 - AluSc SINE Alu -1 308 118 2339 95 0 3 chr3 223907313 223907637 -3616941 - AluSq SINE Alu 0 313 1 2276 121 0 0 chr3 223907639 223907936 -3616642 - AluSq SINE Alu -16 297 1 374 314 81 12 chr3 223908049 223908221 -3616357 - MER5A DNA MER1_type 0 189 6 183 295 202 47 chr3 223908918 223909047 -3615531 - MIR3 SINE MIR -10 198 50 2020 159 0 0 chr3 223909548 223909844 -3614734 + AluJo SINE Alu 1 296 -16 1941 148 7 7 chr3 223912135 223912432 -3612146 + AluSx SINE Alu 1 297 -15 306 339 102 12 chr3 223912867 223913037 -3611541 + MIR SINE MIR 40 224 -38 181 308 84 9 chr3 223913154 223913261 -3611317 - L3 LINE CR1 -72 1505 1391 2135 85 57 0 chr3 223913282 223913565 -3611013 - AluSq SINE Alu -14 299 1 275 206 165 10 chr3 223913737 223913834 -3610744 + MIR3 SINE MIR 49 160 -48 243 167 0 0 chr3 223914697 223914739 -3609839 + MLT1D LTR MaLR 451 492 -13 227 350 46 51 chr3 223915134 223915371 -3609207 + L2 LINE L2 2810 3045 -227 989 121 81 0 chr3 223915444 223915593 -3608985 - AluSg/x SINE Alu -18 292 132 2191 105 14 10 chr3 223915593 223915887 -3608691 - AluSg SINE Alu -15 295 1 381 320 31 8 chr3 223915907 223916035 -3608543 + L2 LINE L2 3137 3267 -5 448 242 43 91 chr3 223916079 223916265 -3608313 - MIR3 SINE MIR -12 196 20 854 327 38 15 chr3 223917310 223917708 -3606870 - L3 LINE CR1 -28 1549 1143 315 262 55 43 chr3 223917944 223918108 -3606470 + L1MC4 LINE L1 7870 8035 -7 2401 69 14 0 chr3 223918149 223918440 -3606138 + AluSp SINE Alu 2 296 -17 2399 95 7 0 chr3 223918440 223918744 -3605834 + AluSx SINE Alu 1 306 -6 2228 113 0 13 chr3 223918770 223919079 -3605499 + AluSq SINE Alu 1 305 -8 1349 117 0 0 chr3 223919079 223919258 -3605320 + AluSg/x SINE Alu 132 310 0 320 279 7 93 chr3 223920275 223920415 -3604163 - MIR SINE MIR -133 129 2 204 154 0 26 chr3 223920459 223920498 -3604080 - MIR SINE MIR -105 157 120 2197 116 36 3 chr3 223921151 223921454 -3603124 - AluSq SINE Alu 0 313 1 253 281 0 0 chr3 223921708 223921772 -3602806 + (TG)n Simple_repeat Simple_repeat 1 64 0 1881 67 0 5 chr3 223922099 223922323 -3602255 - AluSq SINE Alu -90 223 1 184 372 0 0 chr3 223922323 223922401 -3602177 + MIR SINE MIR 185 262 0 3737 162 52 103 chr3 223922538 223922918 -3601660 - MER21A LTR ERV1 -19 912 514 2487 90 0 0 chr3 223922918 223923217 -3601361 + AluSq SINE Alu 1 299 -14 3737 162 52 103 chr3 223923217 223923653 -3600925 - MER21A LTR ERV1 -417 514 146 1758 149 40 17 chr3 223923653 223923949 -3600629 + AluJb SINE Alu 1 303 -9 3737 162 52 103 chr3 223923949 223924067 -3600511 - MER21A LTR ERV1 -785 146 24 649 314 108 41 chr3 223924140 223924630 -3599948 - L2 LINE L2 -1103 2211 1689 833 158 0 0 chr3 223924736 223924863 -3599715 - FLAM_C SINE Alu -6 137 11 2268 126 3 0 chr3 223924883 223925192 -3599386 - AluSx SINE Alu -2 310 1 347 303 39 13 chr3 223925197 223925352 -3599226 - L2 LINE L2 -1898 1416 1258 454 222 10 0 chr3 223925392 223925491 -3599087 - MIR SINE MIR -60 148 49 2099 112 9 53 chr3 223926370 223926555 -3598023 - AluSx SINE Alu -5 307 140 2325 102 3 0 chr3 223926555 223926858 -3597720 - AluSp SINE Alu -9 304 1 2099 112 9 53 chr3 223926858 223926993 -3597585 - AluSx SINE Alu -172 140 1 189 196 22 0 chr3 223927541 223927587 -3596991 - L2 LINE L2 -18 3254 3208 249 268 56 0 chr3 223927811 223927882 -3596696 - L2 LINE L2 -44 3228 3154 1213 146 42 142 chr3 223928307 223928425 -3596153 + AluJo SINE Alu 1 129 -173 297 0 0 0 chr3 223928425 223928458 -3596120 + (CA)n Simple_repeat Simple_repeat 2 34 0 1213 146 42 142 chr3 223928458 223928669 -3595909 + AluJo SINE Alu 129 297 -5 2432 95 0 0 chr3 223928671 223928967 -3595611 + AluSx SINE Alu 1 296 -16 198 235 39 0 chr3 223930316 223930367 -3594211 - MIR3 SINE MIR -39 169 117 359 197 41 90 chr3 223930802 223930924 -3593654 + MIR SINE MIR 90 205 -57 229 203 72 0 chr3 223931300 223931369 -3593209 - MIR SINE MIR -76 132 59 408 239 133 14 chr3 223931390 223931586 -3592992 - MIR SINE MIR -40 222 3 261 243 36 50 chr3 223932017 223932157 -3592421 + CT-rich Low_complexity Low_complexity 3 140 0 2296 97 3 25 chr3 223932157 223932476 -3592102 - AluSx SINE Alu 0 312 1 2474 106 0 0 chr3 223933016 223933328 -3591250 + AluSx SINE Alu 1 312 0 2335 116 0 0 chr3 223933484 223933795 -3590783 + AluSx SINE Alu 1 311 -1 204 322 124 0 chr3 223934475 223934596 -3589982 - MIR SINE MIR -1 261 126 418 250 78 0 chr3 223934610 223934682 -3589896 + MIR SINE MIR 123 188 -74 1011 31 0 0 chr3 223934682 223934809 -3589769 + (TG)n Simple_repeat Simple_repeat 2 128 0 418 250 78 0 chr3 223934809 223934864 -3589714 + MIR SINE MIR 188 260 -2 3241 179 125 16 chr3 223935856 223935879 -3588699 - L1MB8 LINE L1 -127 6051 6032 2809 20 0 0 chr3 223935879 223936224 -3588354 - AluYb8 SINE Alu 0 345 1 3241 179 125 16 chr3 223936224 223937006 -3587572 - L1MB8 LINE L1 -146 6032 5196 289 254 154 39 chr3 223937303 223937433 -3587145 - MIR SINE MIR -83 179 35 1557 84 0 10 chr3 223938482 223938684 -3585894 + AluSg/x SINE Alu 94 293 -19 1043 164 98 12 chr3 223938902 223939146 -3585432 + L1MB8 LINE L1 5914 6178 0 1860 146 108 6 chr3 223939172 223939534 -3585044 + MSTA LTR MaLR 1 399 -29 849 92 0 0 chr3 223939536 223939645 -3584933 - AluSg/x SINE Alu -8 304 196 1684 98 154 23 chr3 223940408 223940674 -3583904 + AluSg1 SINE Alu 1 301 -8 418 233 121 0 chr3 223940680 223940796 -3583782 - L2 LINE L2 -3 3310 3181 568 324 81 0 chr3 223940879 223941138 -3583440 - L2 LINE L2 -901 2413 2134 278 278 18 33 chr3 223941156 223941297 -3583281 - MIR SINE MIR -51 157 20 2111 110 18 4 chr3 223941311 223941615 -3582963 - AluSx SINE Alu 0 308 1 419 226 39 0 chr3 223941736 223941838 -3582740 + MLT1D LTR MaLR 1 106 -399 2178 73 20 40 chr3 223941839 223942140 -3582438 - AluSx SINE Alu -7 305 11 1844 138 14 17 chr3 223943059 223943349 -3581229 - AluJo SINE Alu -23 289 1 494 0 33 0 chr3 223943355 223943416 -3581162 + (TCTA)n Simple_repeat Simple_repeat 2 64 0 2140 108 11 0 chr3 223943422 223943700 -3580878 - AluSq SINE Alu -32 281 1 319 175 53 79 chr3 223943708 223943822 -3580756 - L1MC5 LINE L1 -211 7750 7640 22 0 0 0 chr3 223944243 223944265 -3580313 + AT_rich Low_complexity Low_complexity 1 22 0 256 291 13 13 chr3 223944683 223944762 -3579816 - MIR3 SINE MIR -9 199 121 2418 92 0 3 chr3 223944857 223945162 -3579416 - AluSg SINE Alu -6 304 1 2244 103 3 0 chr3 223945750 223946050 -3578528 + AluSp SINE Alu 2 302 -11 354 313 182 39 chr3 223946224 223946958 -3577620 - L3 LINE CR1 -53 1524 610 7543 36 6 0 chr3 223947037 223948505 -3576073 - L1PA4 LINE L1 -3 6152 4681 181 282 26 43 chr3 223948586 223948703 -3575875 - MIR SINE MIR -1 261 147 216 253 77 44 chr3 223948767 223948858 -3575720 - L3 LINE CR1 -1126 451 358 377 347 146 11 chr3 223948859 223949127 -3575451 - L3 LINE CR1 -1152 425 122 712 189 8 0 chr3 223950309 223950441 -3574137 - FLAM_C SINE Alu 0 133 1 243 213 0 13 chr3 223950446 223950521 -3574057 - L1ME4a LINE L1 -2 6119 6046 2259 111 3 0 chr3 223950665 223950962 -3573616 - AluSx SINE Alu -14 298 1 301 319 7 58 chr3 223952266 223952404 -3572174 + MIR SINE MIR 7 137 -125 208 308 0 0 chr3 223952511 223952563 -3572015 - L2 LINE L2 -8 3264 3213 193 276 26 53 chr3 223953422 223953498 -3571080 - MIR SINE MIR -103 105 32 183 296 126 52 chr3 223953567 223953702 -3570876 + MIR SINE MIR 68 212 -50 * 706 236 67 26 chr3 223953678 223953873 -3570705 - MIR SINE MIR -4 258 56 197 333 16 0 chr3 223953892 223953955 -3570623 + MIR SINE MIR 187 250 -12 450 204 0 83 chr3 223953959 223953977 -3570601 - LTR40c LTR ERVL 0 462 444 2185 131 3 3 chr3 223953977 223954289 -3570289 + AluSx SINE Alu 1 312 0 450 204 0 83 chr3 223954289 223954378 -3570200 - LTR40c LTR ERVL -18 444 364 2272 108 3 0 chr3 223954490 223954785 -3569793 - AluSg SINE Alu -14 296 1 2782 155 30 2 chr3 223954785 223955276 -3569302 - L1MC1 LINE L1 -217 6116 5612 420 111 182 40 chr3 223955278 223955377 -3569201 + MLT1A2 LTR MaLR 6 118 -272 1110 209 59 53 chr3 223955391 223955585 -3568993 - MER21B LTR ERV1 -57 806 608 2212 152 29 52 chr3 223955585 223956027 -3568551 + MSTB1 LTR MaLR 1 432 0 1110 209 59 53 chr3 223956027 223956187 -3568391 - MER21B LTR ERV1 -255 608 450 955 98 0 45 chr3 223956189 223956322 -3568256 + FLAM_C SINE Alu 1 127 -16 1647 159 50 63 chr3 223956331 223956542 -3568036 - MLT1A1 LTR MaLR -6 359 154 2352 97 0 7 chr3 223956542 223956850 -3567728 - AluSx SINE Alu -6 306 1 1647 159 50 63 chr3 223956850 223957002 -3567576 - MLT1A1 LTR MaLR -211 154 1 1405 239 66 42 chr3 223957002 223957448 -3567130 - MER21B LTR ERV1 -406 457 1 448 237 38 8 chr3 223957579 223957710 -3566868 + MLT1B LTR MaLR 197 331 -59 1938 170 48 24 chr3 223957825 223957870 -3566708 - L1MC/D LINE L1 -724 5620 5578 2307 110 0 3 chr3 223957870 223958170 -3566408 + AluSq SINE Alu 6 304 -9 1938 170 48 24 chr3 223958170 223958851 -3565727 - L1MC/D LINE L1 -766 5578 4871 198 0 0 0 chr3 223958859 223958881 -3565697 + (TTTTG)n Simple_repeat Simple_repeat 4 25 0 * 219 69 0 0 chr3 223958880 223958909 -3565669 + (TG)n Simple_repeat Simple_repeat 2 30 0 934 114 0 0 chr3 223958909 223959032 -3565546 - FLAM_C SINE Alu -20 123 1 369 0 0 0 chr3 223959187 223959228 -3565350 + (TA)n Simple_repeat Simple_repeat 2 42 0 2286 112 0 13 chr3 223959228 223959524 -3565054 - AluSx SINE Alu -18 294 1 228 135 0 0 chr3 223960149 223960186 -3564392 + (TG)n Simple_repeat Simple_repeat 2 38 0 851 124 0 72 chr3 223960505 223960658 -3563920 + FLAM_C SINE Alu 1 142 -1 2340 96 3 7 chr3 223960676 223960979 -3563599 - AluSx SINE Alu -10 302 1 2328 91 0 10 chr3 223961298 223961594 -3562984 + AluSc SINE Alu 1 293 -16 2408 104 0 0 chr3 223962338 223962674 -3561904 - AluSc SINE Alu 0 336 1 1277 277 131 16 chr3 223962780 223962990 -3561588 + L2 LINE L2 2082 2266 -1048 1998 132 7 0 chr3 223962990 223963286 -3561292 + AluSx SINE Alu 6 303 -9 1277 277 131 16 chr3 223963286 223963580 -3560998 + L2 LINE L2 2266 2644 -670 1055 264 172 25 chr3 223963636 223964067 -3560511 + L2 LINE L2 2813 3306 -7 2346 112 0 0 chr3 223964091 223964395 -3560183 + AluSx SINE Alu 3 306 -6 313 324 103 28 chr3 223964397 223964542 -3560036 - MIR3 SINE MIR -37 171 16 419 253 41 27 chr3 223964607 223964753 -3559825 + MER112 DNA MER1_type 108 255 -5 2227 102 0 60 chr3 223964753 223965086 -3559492 + AluSq SINE Alu 1 313 0 2338 113 3 0 chr3 223965133 223965443 -3559135 + AluSx SINE Alu 1 311 -1 561 233 175 56 chr3 223966435 223966844 -3557734 + LTR33 LTR ERVL 26 518 -3 385 333 26 0 chr3 223967168 223967321 -3557257 - MIR3 SINE MIR -12 196 40 1223 75 0 0 chr3 223968313 223968474 -3556104 - L1PA5 LINE L1 0 6154 5994 2064 133 17 3 chr3 223969179 223969480 -3555098 - AluSq SINE Alu -8 305 1 549 193 28 17 chr3 223969539 223969715 -3554863 + CT-rich Low_complexity Low_complexity 1 178 0 1872 150 14 7 chr3 223969773 223970059 -3554519 - AluSx SINE Alu -17 295 8 2123 121 13 10 chr3 223970143 223970448 -3554130 - AluSx SINE Alu -6 306 1 497 236 0 24 chr3 223970448 223970575 -3554003 + MIR SINE MIR 138 261 -1 469 287 59 73 chr3 223970892 223970968 -3553610 + L1MC4a LINE L1 5524 5600 -521 2052 113 3 7 chr3 223970968 223971285 -3553293 - AluSx SINE Alu 0 316 1 469 287 59 73 chr3 223971285 223971415 -3553163 + L1MC4a LINE L1 5600 5730 -391 1993 129 0 11 chr3 223971415 223971695 -3552883 + AluSx SINE Alu 36 312 0 469 287 59 73 chr3 223971695 223971893 -3552685 + L1MC4a LINE L1 5730 5925 -196 1908 217 19 17 chr3 223971901 223972384 -3552194 - L1ME1 LINE L1 -5 6161 5678 1753 151 113 80 chr3 223972382 223972791 -3551787 - L1MD1 LINE L1 0 6242 5848 * 276 30 0 0 chr3 223972791 223972824 -3551754 + (TA)n Simple_repeat Simple_repeat 1 33 0 315 0 0 0 chr3 223972825 223972860 -3551718 + (CA)n Simple_repeat Simple_repeat 1 35 0 1753 151 113 80 chr3 223972860 223973034 -3551544 - L1MD1 LINE L1 -393 5849 5604 2101 105 0 4 chr3 223973038 223973357 -3551221 - AluY SINE Alu 0 323 6 315 100 33 67 chr3 223973362 223973422 -3551156 + L1MC/D LINE L1 5581 5638 -695 474 244 38 8 chr3 223973517 223973648 -3550930 - MLT1B LTR MaLR -59 331 197 1359 246 66 42 chr3 223973781 223974227 -3550351 + MER21B LTR ERV1 1 457 -406 340 212 71 18 chr3 223974227 223974340 -3550238 + MLT1A1 LTR MaLR 1 119 -246 2218 84 0 45 chr3 223974504 223974812 -3549766 - AluSc SINE Alu -15 294 1 545 277 126 27 chr3 223976212 223976345 -3548233 + L1ME4a LINE L1 5720 5838 -283 2328 98 0 0 chr3 223976345 223976659 -3547919 + AluSq SINE Alu 1 314 0 545 277 126 27 chr3 223976659 223976889 -3547689 + L1ME4a LINE L1 5838 6120 -1 185 291 0 36 chr3 223977040 223977095 -3547483 + L3b LINE CR1 1530 1582 -1 259 223 142 108 chr3 223977415 223977563 -3547015 + MIR3 SINE MIR 24 176 -32 882 143 0 0 chr3 223977640 223977773 -3546805 + FLAM_C SINE Alu 1 133 0 448 290 70 55 chr3 223977937 223978076 -3546502 - L3 LINE CR1 -64 1513 1369 2151 81 66 0 chr3 223978076 223978348 -3546230 + AluY SINE Alu 1 290 -21 448 290 70 55 chr3 223978348 223978408 -3546170 - L3 LINE CR1 -208 1369 1311 2295 96 7 0 chr3 223978965 223979256 -3545322 - AluSx SINE Alu -19 293 1 1138 224 67 77 chr3 223980409 223980627 -3543951 - MLT2C1 LTR ERVL 0 397 183 1921 127 28 10 chr3 223980627 223980746 -3543832 + AluJb SINE Alu 10 125 -187 2387 83 0 3 chr3 223980746 223981046 -3543532 + AluY SINE Alu 1 299 -12 1921 127 28 10 chr3 223981046 223981217 -3543361 + AluJb SINE Alu 125 305 -7 1138 224 67 77 chr3 223981217 223981399 -3543179 - MLT2C1 LTR ERVL -214 183 1 5784 179 52 20 chr3 223981548 223981934 -3542644 - ERVL LTR ERVL -735 5029 4657 563 131 262 28 chr3 223981934 223982041 -3542537 + FLAM_C SINE Alu 1 132 -1 5784 179 52 20 chr3 223982041 223982765 -3541813 - ERVL LTR ERVL -1107 4657 3883 1109 178 99 48 chr3 223982765 223983057 -3541521 + MLT1A1 LTR MaLR 1 307 -58 1658 235 54 12 chr3 223983090 223983550 -3541028 - ERVL LTR ERVL -4871 893 347 1433 141 0 0 chr3 223983550 223983748 -3540830 - AluSg/x SINE Alu -14 296 99 28 0 0 0 chr3 223983753 223983781 -3540797 + AT_rich Low_complexity Low_complexity 1 28 0 1381 216 35 47 chr3 223983836 223984238 -3540340 - MLT2C1 LTR ERVL 0 397 1 2403 85 3 0 chr3 223984238 223984532 -3540046 + AluSp SINE Alu 3 297 -16 200 307 47 47 chr3 223984561 223984688 -3539890 - L2 LINE L2 -568 2746 2620 337 271 76 0 chr3 223984696 223984814 -3539764 + MLT1B LTR MaLR 1 127 -263 1590 167 84 0 chr3 223984815 223985090 -3539488 + AluJb SINE Alu 1 298 -14 1379 123 31 40 chr3 223985093 223985321 -3539257 + AluSx SINE Alu 1 226 -86 21 0 0 0 chr3 223985321 223985342 -3539236 + AT_rich Low_complexity Low_complexity 1 21 0 2046 125 35 0 chr3 223985345 223985634 -3538944 + AluSx SINE Alu 1 299 -13 274 210 168 15 chr3 223986624 223986754 -3537824 + MIR SINE MIR 35 180 -68 1319 128 0 0 chr3 223986839 223987019 -3537559 + AluSq SINE Alu 134 313 0 222 304 17 61 chr3 223988678 223988793 -3535785 + MER5A DNA MER1_type 80 189 0 287 181 60 48 chr3 223988937 223989020 -3535558 - MER5B DNA MER1_type 0 178 95 536 267 189 0 chr3 223989652 223989832 -3534746 - MIR SINE MIR -34 228 15 468 261 120 0 chr3 223989855 223989997 -3534581 - MIR SINE MIR -3 259 101 2286 106 3 0 chr3 223990064 223990365 -3534213 - AluSx SINE Alu -10 302 1 359 242 16 105 chr3 223990560 223990684 -3533894 + MER5A DNA MER1_type 77 189 0 4582 105 15 3 chr3 223990732 223991398 -3533180 - LTR8 LTR ERV1 -17 674 1 224 347 66 8 chr3 223991715 223991836 -3532742 + L2 LINE L2 3140 3267 -5 298 220 20 80 chr3 223992078 223992178 -3532400 - MIR SINE MIR -60 202 109 1780 166 0 47 chr3 223992178 223992313 -3532265 + AluJo SINE Alu 1 141 -171 2282 100 0 0 chr3 223992313 223992602 -3531976 + AluSx SINE Alu 2 290 -22 1780 166 0 47 chr3 223992602 223992786 -3531792 + AluJo SINE Alu 141 305 -7 2412 69 3 3 chr3 223992855 223993144 -3531434 - AluY SINE Alu -16 295 7 262 319 43 85 chr3 223993157 223993237 -3531341 - L3 LINE CR1 -10 1567 1494 2079 124 7 0 chr3 223993237 223993528 -3531050 - AluSx SINE Alu -19 293 1 262 319 43 85 chr3 223993528 223993588 -3530990 - L3 LINE CR1 -83 1494 1433 728 147 23 0 chr3 223994109 223994238 -3530340 + FLAM_A SINE Alu 1 132 -1 2130 89 50 0 chr3 223994366 223994647 -3529931 - AluSq SINE Alu -17 296 2 195 129 0 0 chr3 223994703 223994734 -3529844 + (T)n Simple_repeat Simple_repeat 1 31 0 2261 95 7 0 chr3 223995321 223995627 -3528951 - AluSx SINE Alu -4 308 1 2307 71 3 0 chr3 223995627 223995922 -3528656 - AluSp SINE Alu -17 296 1 384 281 141 30 chr3 223995950 223996085 -3528493 - L2 LINE L2 0 3313 3164 2111 96 13 13 chr3 223996154 223996457 -3528121 + AluSg SINE Alu 1 303 -7 1223 75 0 0 chr3 223997161 223997322 -3527256 + L1PA5 LINE L1 5994 6154 0 373 333 26 0 chr3 223998313 223998466 -3526112 + MIR3 SINE MIR 40 196 -12 611 239 191 60 chr3 223998790 223999220 -3525358 - LTR33 LTR ERVL -3 518 33 2190 113 3 0 chr3 224000191 224000501 -3524077 - AluSx SINE Alu -1 311 1 2107 100 0 54 chr3 224000551 224000882 -3523696 - AluSq SINE Alu 0 313 1 450 253 41 27 chr3 224000882 224001028 -3523550 - MER112 DNA MER1_type -5 255 108 305 324 103 28 chr3 224001093 224001238 -3523340 + MIR3 SINE MIR 16 171 -37 2197 112 0 0 chr3 224001240 224001544 -3523034 - AluSx SINE Alu -6 306 3 997 269 172 25 chr3 224001568 224001999 -3522579 - L2 LINE L2 -7 3306 2813 1216 283 131 16 chr3 224002055 224002349 -3522229 - L2 LINE L2 -670 2644 2385 1970 118 3 0 chr3 224002349 224002645 -3521933 - AluSx SINE Alu -10 302 6 1216 283 131 16 chr3 224002645 224002855 -3521723 - L2 LINE L2 -929 2385 2082 224 121 0 152 chr3 224002925 224002961 -3521617 + (A)n Simple_repeat Simple_repeat 1 24 -32 2253 104 0 0 chr3 224002961 224003268 -3521310 + AluSc SINE Alu 1 307 -2 224 121 0 152 chr3 224003268 224003297 -3521281 + (A)n Simple_repeat Simple_repeat 24 56 0 2182 91 0 10 chr3 224004037 224004333 -3520245 - AluSc SINE Alu -16 293 1 2305 83 3 0 chr3 224004652 224004953 -3519625 + AluSx SINE Alu 1 302 -10 822 125 0 72 chr3 224004971 224005123 -3519455 - FLAM_C SINE Alu -1 142 2 228 135 0 0 chr3 224005443 224005480 -3519098 + (CA)n Simple_repeat Simple_repeat 2 38 0 231 194 15 60 chr3 224006033 224006100 -3518478 + L1ME LINE L1 5622 5685 -436 2135 112 0 13 chr3 224006105 224006401 -3518177 + AluSx SINE Alu 1 294 -18 369 0 0 0 chr3 224006401 224006442 -3518136 + (TA)n Simple_repeat Simple_repeat 2 42 0 862 96 0 0 chr3 224006597 224006712 -3517866 + FLAM_C SINE Alu 1 115 -28 219 69 0 0 chr3 224006720 224006749 -3517829 + (CA)n Simple_repeat Simple_repeat 2 30 0 198 0 0 0 chr3 224006748 224006770 -3517808 + (CAAAA)n Simple_repeat Simple_repeat 4 25 0 * 2003 166 48 30 chr3 224006778 224007459 -3517119 + L1MC1 LINE L1 4871 5572 -772 2157 102 0 3 chr3 224007459 224007754 -3516824 - AluSq SINE Alu -9 304 11 2003 166 48 30 chr3 224007754 224007802 -3516776 + L1MC1 LINE L1 5572 5618 -726 237 215 77 0 chr3 224007802 224007867 -3516711 - MLT1B LTR MaLR 0 390 321 483 237 38 8 chr3 224007919 224008050 -3516528 - MLT1B LTR MaLR -59 331 197 236 277 43 64 chr3 224008080 224008174 -3516404 - MLT1B LTR MaLR -186 188 97 1526 239 66 42 chr3 224008181 224008627 -3515951 + MER21B LTR ERV1 1 457 -406 1767 157 50 63 chr3 224008627 224008779 -3515799 + MLT1A1 LTR MaLR 1 154 -211 2201 97 0 7 chr3 224008779 224009087 -3515491 + AluSx SINE Alu 1 306 -6 1767 157 50 63 chr3 224009087 224009298 -3515280 + MLT1A1 LTR MaLR 154 359 -6 885 103 0 0 chr3 224009323 224009440 -3515138 - FLAM_C SINE Alu -26 117 1 1246 202 60 54 chr3 224009442 224009602 -3514976 + MER21B LTR ERV1 450 608 -255 2175 149 29 54 chr3 224009602 224010045 -3514533 - MSTB1 LTR MaLR 0 432 1 1246 202 60 54 chr3 224010045 224010236 -3514342 + MER21B LTR ERV1 608 803 -60 442 111 182 40 chr3 224010253 224010352 -3514226 - MLT1A2 LTR MaLR -272 118 6 3904 152 37 21 chr3 224010354 224010845 -3513733 + L1MC1 LINE L1 5612 6119 -214 2234 103 0 0 chr3 224010845 224011145 -3513433 + AluSg SINE Alu 1 300 -10 3904 152 37 21 chr3 224011145 224011359 -3513219 + L1MC1 LINE L1 6119 6328 -5 201 300 0 133 chr3 224011363 224011409 -3513169 + MIR SINE MIR 154 204 -58 2027 72 0 4 chr3 224011409 224011671 -3512907 - AluSq SINE Alu -52 261 1 201 300 0 133 chr3 224011671 224011744 -3512834 + MIR SINE MIR 204 257 -5 3932 157 55 105 chr3 224011886 224012266 -3512312 - MER21A LTR ERV1 -19 912 514 2291 90 0 3 chr3 224012266 224012566 -3512012 + AluSq SINE Alu 1 299 -14 3932 157 55 105 chr3 224012566 224013002 -3511576 - MER21A LTR ERV1 -417 514 146 1605 149 40 17 chr3 224013002 224013298 -3511280 + AluJb SINE Alu 1 303 -9 3932 157 55 105 chr3 224013298 224013416 -3511162 - MER21A LTR ERV1 -785 146 24 720 314 108 41 chr3 224013489 224013979 -3510599 - L2 LINE L2 -1103 2211 1689 792 150 31 0 chr3 224014091 224014218 -3510360 - FLAM_C SINE Alu -2 131 1 2109 122 3 0 chr3 224014237 224014541 -3510037 - AluSx SINE Alu -7 305 1 373 303 39 13 chr3 224014546 224014701 -3509877 - L2 LINE L2 -1898 1416 1258 484 222 10 0 chr3 224014741 224014840 -3509738 - MIR SINE MIR -60 148 49 1193 77 0 0 chr3 224015679 224015834 -3508744 + THE1B-int LTR MaLR 1426 1580 0 2213 130 33 28 chr3 224015834 224016196 -3508382 + THE1B LTR MaLR 1 364 0 795 210 28 47 chr3 224016391 224016605 -3507973 + L1MC5 LINE L1 6650 6859 -1102 591 181 94 35 chr3 224016605 224016776 -3507802 + L1MC5 LINE L1 7234 7414 -547 1554 186 7 3 chr3 224016780 224017065 -3507513 + AluJo SINE Alu 9 294 -18 606 127 15 97 chr3 224017083 224017217 -3507361 + FLAM_A SINE Alu 20 142 0 560 214 90 49 chr3 224017228 224017971 -3506607 + L1MC5 LINE L1 6876 7835 -126 2259 88 3 0 chr3 224017971 224018268 -3506310 - AluSx SINE Alu -14 298 1 560 214 90 49 chr3 224018268 224018351 -3506227 + L1MC5 LINE L1 7835 7913 -48 201 74 0 0 chr3 224018357 224018384 -3506194 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1424 170 19 45 chr3 224018436 224018747 -3505831 - AluJb SINE Alu -9 303 1 449 327 102 10 chr3 224018747 224018952 -3505626 + MIR SINE MIR 21 244 -18 24 67 0 0 chr3 224019898 224019943 -3504635 + GC_rich Low_complexity Low_complexity 1 45 0 238 360 137 13 chr3 224022412 224022565 -3502013 - L2 LINE L2 -190 3082 2911 2150 89 7 0 chr3 224022570 224022879 -3501699 + AluSx SINE Alu 1 311 0 584 218 140 72 chr3 224024205 224024498 -3500080 - L2 LINE L2 -6 3307 2995 944 228 52 0 chr3 224024509 224024741 -3499837 + MER33 DNA MER1_type 1 244 -80 1498 116 0 0 chr3 224024741 224024948 -3499630 + AluSg/x SINE Alu 83 289 -21 294 75 0 0 chr3 224025056 224025096 -3499482 + MADE1 DNA Mariner 36 75 -5 2138 89 0 0 chr3 224025115 224025420 -3499158 - AluSx SINE Alu 0 313 9 314 104 0 0 chr3 224025422 224025470 -3499108 + MADE1 DNA Mariner 33 80 0 804 150 0 8 chr3 224025518 224025651 -3498927 - FLAM_C SINE Alu -1 132 1 2945 150 41 30 chr3 224025682 224026249 -3498329 + L1MB7 LINE L1 5550 6122 -62 2210 102 0 0 chr3 224026249 224026552 -3498026 - AluSx SINE Alu -9 303 1 1029 89 0 0 chr3 224026552 224026687 -3497891 - AluSq/x SINE Alu -178 135 1 2173 92 0 10 chr3 224027006 224027301 -3497277 + AluSc SINE Alu 1 292 -17 292 208 188 10 chr3 224028047 224028148 -3496430 - MIR3 SINE MIR -41 167 49 2051 94 34 10 chr3 224028320 224028618 -3495960 + AluSq SINE Alu 1 305 -8 1235 123 0 0 chr3 224028618 224028797 -3495781 + AluSg/x SINE Alu 132 310 0 342 279 7 93 chr3 224029819 224029959 -3494619 - MIR SINE MIR -133 129 2 218 154 0 26 chr3 224030003 224030042 -3494536 - MIR SINE MIR -105 157 120 2018 116 36 3 chr3 224030695 224030998 -3493580 - AluSq SINE Alu 0 313 1 216 214 0 0 chr3 224031252 224031308 -3493270 + (TG)n Simple_repeat Simple_repeat 1 56 0 1717 81 5 0 chr3 224031665 224031888 -3492690 - AluSp SINE Alu -88 225 2 2226 85 0 3 chr3 224032474 224032768 -3491810 + AluSg SINE Alu 1 293 -17 238 304 13 13 chr3 224032876 224032955 -3491623 + MIR3 SINE MIR 121 199 -9 22 0 0 0 chr3 224033373 224033395 -3491183 + AT_rich Low_complexity Low_complexity 1 22 0 324 184 53 79 chr3 224033816 224033930 -3490648 + L1MC5 LINE L1 7640 7750 -211 2023 101 11 0 chr3 224033938 224034216 -3490362 + AluSq SINE Alu 1 281 -32 611 37 25 0 chr3 224034222 224034303 -3490275 + (TAGA)n Simple_repeat Simple_repeat 2 84 0 1135 151 24 24 chr3 224034309 224034521 -3490057 + AluJo SINE Alu 1 212 -100 692 155 0 9 chr3 224034681 224034797 -3489781 + FLAM_C SINE Alu 3 117 -16 2158 103 0 0 chr3 224034811 224035103 -3489475 - AluSx SINE Alu -20 292 1 295 216 50 93 chr3 224035133 224035272 -3489306 + L2 LINE L2 3161 3293 -20 2053 117 3 3 chr3 224035716 224036007 -3488571 - AluSx SINE Alu -21 291 1 2304 106 0 0 chr3 224036162 224036474 -3488104 - AluSx SINE Alu 0 312 1 236 374 53 20 chr3 224036904 224037014 -3487564 + L2 LINE L2 2804 2909 -363 2041 101 3 14 chr3 224037014 224037486 -3487092 + AluSx SINE Alu 1 469 0 236 374 53 20 chr3 224037486 224037620 -3486958 + L2 LINE L2 2909 3057 -215 198 103 0 0 chr3 224037856 224037885 -3486693 + (T)n Simple_repeat Simple_repeat 1 29 0 1759 121 4 0 chr3 224037893 224038142 -3486436 - AluSx SINE Alu -62 250 1 386 193 17 51 chr3 224038201 224038377 -3486201 + CT-rich Low_complexity Low_complexity 1 170 0 1954 130 0 3 chr3 224038926 224039225 -3485353 - AluSx SINE Alu -13 299 2 381 159 63 0 chr3 224040162 224040225 -3484353 - MER66B LTR ERV1 -140 346 280 1667 179 0 0 chr3 224040403 224040688 -3483890 - AluJb SINE Alu -23 289 5 1507 159 0 69 chr3 224040693 224040877 -3483701 - AluJo SINE Alu -14 298 144 2133 98 0 3 chr3 224040877 224041174 -3483404 - AluSg SINE Alu -14 296 1 1507 159 0 69 chr3 224041174 224041309 -3483269 - AluJo SINE Alu -168 144 1 697 194 8 0 chr3 224041613 224041737 -3482841 + FLAM_C SINE Alu 7 131 -12 363 326 87 38 chr3 224043680 224043864 -3480714 + MIR SINE MIR 4 196 -66 204 40 0 0 chr3 224044407 224044432 -3480146 + (TTTTA)n Simple_repeat Simple_repeat 2 26 0 205 348 124 0 chr3 224045099 224045188 -3479390 - L2 LINE L2 -27 3245 3146 224 267 0 0 chr3 224045203 224045248 -3479330 + MER91B DNA MER1_type 31 75 -115 240 298 149 42 chr3 224045626 224045794 -3478784 + L2 LINE L2 3098 3283 -30 298 337 45 45 chr3 224046809 224046987 -3477591 - L2 LINE L2 -249 3023 2846 204 97 0 0 chr3 224048253 224048284 -3476294 + (TG)n Simple_repeat Simple_repeat 1 31 0 630 306 46 14 chr3 224048959 224049243 -3475335 - HsTC2 DNA Tc2 -1573 325 33 878 233 47 16 chr3 224049574 224049827 -3474751 + AluJo SINE Alu 29 289 -23 386 270 74 25 chr3 224050180 224050343 -3474235 - L1MC/D LINE L1 -2029 5779 5609 360 132 19 0 chr3 224050360 224050413 -3474165 - 5S rRNA rRNA -67 54 1 3686 113 25 12 chr3 224050845 224051413 -3473165 - L1PA16 LINE L1 -9 6157 5583 1830 154 3 7 chr3 224052346 224052632 -3471946 + AluSx SINE Alu 1 285 -27 291 114 0 0 chr3 224052632 224052676 -3471902 + (T)n Simple_repeat Simple_repeat 1 44 0 2073 127 3 10 chr3 224054525 224054825 -3469753 - AluSx SINE Alu -14 298 1 1604 155 4 0 chr3 224054845 224055103 -3469475 - AluSx SINE Alu -7 305 47 22 0 0 0 chr3 224055595 224055617 -3468961 + AT_rich Low_complexity Low_complexity 1 22 0 750 218 0 0 chr3 224057163 224057296 -3467282 - FLAM_A SINE Alu 0 133 1 307 148 0 159 chr3 224057353 224057441 -3467137 - L1MC5 LINE L1 -66 7895 7822 27 0 0 0 chr3 224057463 224057490 -3467088 + AT_rich Low_complexity Low_complexity 1 27 0 780 232 93 48 chr3 224057522 224058004 -3466574 - L1M4 LINE L1 -2773 3373 2870 1931 130 21 0 chr3 224058006 224058172 -3466406 - AluSx SINE Alu -17 295 119 207 0 0 0 chr3 224058172 224058195 -3466383 + (TG)n Simple_repeat Simple_repeat 2 24 0 1931 130 21 0 chr3 224058195 224058312 -3466266 - AluSx SINE Alu -193 119 6 2233 265 35 19 chr3 224058321 224058988 -3465590 - L1MEc LINE L1 -5685 711 35 792 144 0 24 chr3 224059088 224059213 -3465365 + FLAM_C SINE Alu 5 126 -7 2147 109 3 7 chr3 224059829 224060122 -3464456 - AluSx SINE Alu -19 293 2 227 233 67 0 chr3 224060291 224060351 -3464227 - L2 LINE L2 -2 3311 3248 505 209 72 0 chr3 224060423 224060562 -3464016 - Charlie1 DNA MER1_type 0 2761 2613 21 0 0 0 chr3 224060563 224060584 -3463994 + AT_rich Low_complexity Low_complexity 1 21 0 364 154 51 0 chr3 224060600 224060678 -3463900 - Charlie1 DNA MER1_type -218 2543 2462 1968 132 84 0 chr3 224061365 224061675 -3462903 - MER1B DNA MER1_type 0 337 2 492 206 127 18 chr3 224062264 224062429 -3462149 - MER53 DNA DNA -4 185 3 1023 173 63 16 chr3 224062551 224062805 -3461773 + L1MD3 LINE L1 7730 7995 0 206 335 130 19 chr3 224063506 224063667 -3460911 - MIR3 SINE MIR -14 194 16 202 297 127 42 chr3 224065179 224065297 -3459281 - MER5B DNA MER1_type -50 128 1 1847 138 20 14 chr3 224065312 224065609 -3458969 + AluSq SINE Alu 1 299 -14 28 0 0 0 chr3 224065631 224065659 -3458919 + AT_rich Low_complexity Low_complexity 1 28 0 2281 97 0 7 chr3 224065914 224066214 -3458364 + AluSc SINE Alu 1 298 -11 678 219 53 6 chr3 224067130 224067299 -3457279 + MER104 DNA MER2_type 1 177 -3 266 296 191 16 chr3 224068474 224068663 -3455915 + MIR SINE MIR 1 222 -40 2413 44 17 7 chr3 224069160 224069454 -3455124 - AluY SINE Alu -14 297 1 205 283 83 0 chr3 224069794 224069854 -3454724 + MIR SINE MIR 198 262 0 180 0 0 0 chr3 224070388 224070408 -3454170 + (ATTG)n Simple_repeat Simple_repeat 4 23 0 1661 164 0 22 chr3 224070416 224070684 -3453894 - AluJb SINE Alu -44 268 7 1172 175 141 22 chr3 224070700 224070969 -3453609 - AluJb SINE Alu 0 302 2 278 192 55 27 chr3 224071029 224071102 -3453476 - L2 LINE L2 0 3272 3198 215 30 0 30 chr3 224071483 224071516 -3453062 + (TTTTA)n Simple_repeat Simple_repeat 2 33 0 1659 153 29 11 chr3 224071519 224071794 -3452784 - AluSx SINE Alu -32 280 1 805 148 8 0 chr3 224071794 224071922 -3452656 - AluSq/x SINE Alu -178 135 7 349 324 28 19 chr3 224071929 224072037 -3452541 - L2 LINE L2 -564 2750 2642 2009 141 10 0 chr3 224074295 224074601 -3449977 - AluSx SINE Alu 0 312 4 351 0 0 0 chr3 224074910 224074949 -3449629 + (TG)n Simple_repeat Simple_repeat 2 40 0 24 32 0 0 chr3 224075250 224075281 -3449297 + AT_rich Low_complexity Low_complexity 1 31 0 2408 68 0 3 chr3 224075616 224075911 -3448667 + AluY SINE Alu 1 294 -17 544 212 15 8 chr3 224076188 224076320 -3448258 + MER3 DNA MER1_type 77 209 0 300 260 0 0 chr3 224076320 224076358 -3448220 - MER3 DNA MER1_type -162 47 10 2885 178 60 24 chr3 224077233 224077813 -3446765 - MER6A DNA MER2_type -3 602 2 473 239 250 35 chr3 224078388 224078844 -3445734 - L1MC5 LINE L1 -49 7912 7359 276 257 143 43 chr3 224078904 224079114 -3445464 - L1MC5 LINE L1 -1807 6001 5771 470 268 100 21 chr3 224079561 224080241 -3444337 - L1ME3A LINE L1 -258 5895 5142 421 252 0 21 chr3 224080384 224080527 -3444051 - L1ME3A LINE L1 -3750 2379 2240 402 78 62 0 chr3 224080956 224081020 -3443558 - MER41A LTR ERV1 -88 466 399 364 320 110 5 chr3 224081025 224081225 -3443353 - HAL1 LINE L1 -890 1617 1397 326 236 29 57 chr3 224081244 224081384 -3443194 - L1ME3A LINE L1 -4873 1246 1111 669 162 0 0 chr3 224081568 224081679 -3442899 - FLAM_C SINE Alu -32 111 1 823 249 63 0 chr3 224081868 224082073 -3442505 + MIR SINE MIR 42 259 -3 776 261 35 55 chr3 224082128 224082438 -3442140 - L1ME3A LINE L1 -5719 400 97 264 273 0 20 chr3 224083122 224083221 -3441357 - HAL1 LINE L1 -1410 1097 1001 216 163 0 0 chr3 224083890 224083933 -3440645 + CT-rich Low_complexity Low_complexity 4 46 0 347 167 42 14 chr3 224084315 224084387 -3440191 - HsTC2 DNA Tc2 -1813 85 12 23 0 0 0 chr3 224085181 224085204 -3439374 + AT_rich Low_complexity Low_complexity 1 23 0 916 118 15 15 chr3 224085205 224085340 -3439238 - AluJo SINE Alu -177 135 1 2147 108 0 0 chr3 224085829 224086117 -3438461 - AluSx SINE Alu -24 288 1 23 0 0 0 chr3 224086121 224086144 -3438434 + AT_rich Low_complexity Low_complexity 1 23 0 364 160 13 40 chr3 224087085 224087160 -3437418 - AluSg/x SINE Alu -11 289 217 1206 164 19 5 chr3 224087160 224087367 -3437211 - AluSx SINE Alu -44 268 59 204 260 20 0 chr3 224087460 224087510 -3437068 - MIR SINE MIR -15 247 197 2286 104 0 0 chr3 224088071 224088368 -3436210 - AluSg SINE Alu -13 297 1 1635 197 3 16 chr3 224089045 224089360 -3435218 - AluJo SINE Alu -1 311 1 244 310 124 18 chr3 224089446 224089559 -3435019 + L2 LINE L2 3125 3249 -23 2847 16 0 0 chr3 224090452 224090765 -3433813 + AluYb8 SINE Alu 1 313 -5 296 251 146 65 chr3 224090798 224090997 -3433581 + L2 LINE L2 3094 3308 -5 21 0 0 0 chr3 224091400 224091421 -3433157 + AT_rich Low_complexity Low_complexity 1 21 0 208 288 0 55 chr3 224091756 224091829 -3432749 - L2 LINE L2 -9 3263 3195 27 73 0 0 chr3 224093114 224093169 -3431409 + AT_rich Low_complexity Low_complexity 1 55 0 233 304 196 18 chr3 224093400 224093512 -3431066 - MIR SINE MIR -56 152 21 847 59 0 0 chr3 224094746 224094847 -3429731 - AluSc SINE Alu -208 101 1 22 80 0 0 chr3 224094873 224094923 -3429655 + AT_rich Low_complexity Low_complexity 1 50 0 740 262 71 12 chr3 224095288 224095540 -3429038 - L1MC4 LINE L1 -84 7958 7692 439 148 49 12 chr3 224095557 224095638 -3428940 - MER20 DNA MER1_type -134 85 2 604 163 78 78 chr3 224095639 224095745 -3428833 + L1MC4a LINE L1 7130 7238 -570 2424 93 0 0 chr3 224095745 224096056 -3428522 - AluSx SINE Alu -1 311 1 604 163 78 78 chr3 224096056 224096115 -3428463 + L1MC4a LINE L1 7237 7295 -513 441 0 0 0 chr3 224096310 224096359 -3428219 + (TTTA)n Simple_repeat Simple_repeat 3 51 0 851 134 0 0 chr3 224096359 224096478 -3428100 - AluJb SINE Alu -193 119 1 1564 97 0 93 chr3 224097011 224097269 -3427309 + AluSx SINE Alu 2 235 -77 272 306 72 36 chr3 224097409 224097520 -3427058 + MIR3 SINE MIR 88 202 -6 25 65 0 0 chr3 224099662 224099708 -3424870 + AT_rich Low_complexity Low_complexity 1 46 0 31 44 0 0 chr3 224099745 224099790 -3424788 + AT_rich Low_complexity Low_complexity 1 45 0 22 0 0 0 chr3 224102028 224102050 -3422528 + AT_rich Low_complexity Low_complexity 1 22 0 2448 73 0 0 chr3 224102422 224102723 -3421855 - AluY SINE Alu -10 301 1 180 0 0 0 chr3 224102825 224102845 -3421733 + (TA)n Simple_repeat Simple_repeat 1 20 0 203 271 0 0 chr3 224103199 224103247 -3421331 + (TATATG)n Simple_repeat Simple_repeat 3 50 0 26 0 0 0 chr3 224104012 224104038 -3420540 + AT_rich Low_complexity Low_complexity 1 26 0 387 194 279 31 chr3 224104729 224104951 -3419627 - L1ME3A LINE L1 -220 5950 5674 650 251 24 24 chr3 224104976 224105143 -3419435 + MER97b DNA MER1_type? 13 179 -874 724 208 138 88 chr3 224105231 224105899 -3418679 - L1ME3A LINE L1 -584 5582 4850 556 127 18 9 chr3 224105899 224106009 -3418569 + CT-rich Low_complexity Low_complexity 1 111 0 1442 170 0 76 chr3 224106014 224106303 -3418275 - AluJb SINE Alu -45 267 1 549 0 0 0 chr3 224106514 224106575 -3418003 + (TG)n Simple_repeat Simple_repeat 2 62 0 1064 160 108 14 chr3 224106575 224106787 -3417791 - AluSx SINE Alu -34 278 47 898 278 107 50 chr3 224106819 224107504 -3417074 - L1ME3A LINE L1 -1495 4651 3899 2229 97 3 3 chr3 224107504 224107794 -3416784 - AluSg SINE Alu -20 290 1 898 278 107 50 chr3 224107794 224108027 -3416551 - L1ME3A LINE L1 -2247 3899 3681 362 204 43 11 chr3 224108087 224108180 -3416398 - L1MC/D LINE L1 -2007 5801 5706 983 57 0 0 chr3 224108190 224108313 -3416265 + AluY SINE Alu 188 310 -1 301 277 102 15 chr3 224108364 224108501 -3416077 - L1MC/D LINE L1 -468 5653 5505 825 310 57 53 chr3 224108618 224109198 -3415380 + L2 LINE L2 1808 2389 -925 1871 167 10 0 chr3 224109497 224109791 -3414787 - AluSx SINE Alu -15 297 1 391 273 163 10 chr3 224109859 224110068 -3414510 + MIR SINE MIR 21 261 -1 306 0 0 0 chr3 224113000 224113034 -3411544 + (CA)n Simple_repeat Simple_repeat 2 35 0 1231 141 0 24 chr3 224113390 224113596 -3410982 - AluJb SINE Alu -18 294 94 243 193 18 35 chr3 224113597 224113654 -3410924 - AluJo SINE Alu -127 175 120 976 111 0 15 chr3 224113662 224113797 -3410781 - AluJo SINE Alu -169 133 1 510 105 53 0 chr3 224114147 224114223 -3410355 + MER20 DNA MER1_type 3 82 -137 243 0 0 0 chr3 224114255 224114282 -3410296 + (A)n Simple_repeat Simple_repeat 1 27 0 232 325 75 0 chr3 224114313 224114393 -3410185 + MER5A DNA MER1_type 54 139 -50 24 0 0 0 chr3 224115410 224115434 -3409144 + AT_rich Low_complexity Low_complexity 1 24 0 2342 74 3 13 chr3 224115654 224115953 -3408625 + AluSc SINE Alu 1 296 -13 747 235 12 24 chr3 224117675 224117841 -3406737 + AluSg/x SINE Alu 125 288 -22 465 290 117 15 chr3 224117850 224118184 -3406394 + L2 LINE L2 2241 2608 -706 295 272 85 97 chr3 224118285 224119011 -3405567 + L2 LINE L2 2292 3017 -255 994 167 42 65 chr3 224119021 224119152 -3405426 + MER2 DNA MER2_type 1 127 -218 2178 102 14 7 chr3 224119152 224119445 -3405133 - AluSx SINE Alu -14 298 4 994 167 42 65 chr3 224119445 224119529 -3405049 + MER2 DNA MER2_type 127 211 -134 1056 149 0 63 chr3 224119671 224119845 -3404733 + FRAM SINE Alu 2 164 -2 278 282 48 58 chr3 224119885 224119988 -3404590 + L2 LINE L2 3171 3272 0 204 182 114 0 chr3 224120003 224120047 -3404531 + L2 LINE L2 3019 3067 -205 2027 103 41 3 chr3 224120058 224120350 -3404228 + AluSq SINE Alu 1 303 -10 273 198 30 79 chr3 224120457 224120558 -3404020 - MIR SINE MIR -45 217 122 * 330 175 62 12 chr3 224120556 224120636 -3403942 - MIR SINE MIR -55 207 124 308 229 276 0 chr3 224120701 224120806 -3403772 - MIR SINE MIR -118 144 11 2255 114 0 0 chr3 224121289 224121587 -3402991 + AluSx SINE Alu 1 298 -14 434 208 132 9 chr3 224121977 224122083 -3402495 + MER63 DNA MER1_type 6 750 -312 1750 132 11 8 chr3 224122133 224122399 -3402179 - AluSq SINE Alu -13 300 34 2235 107 3 3 chr3 224122546 224122846 -3401732 + AluSq SINE Alu 1 300 -13 722 265 105 0 chr3 224123088 224123288 -3401290 - MIR SINE MIR -21 241 21 1200 140 67 0 chr3 224123288 224123481 -3401097 + MER58A DNA MER1_type 16 221 -3 2013 144 7 0 chr3 224123725 224124023 -3400555 + AluSx SINE Alu 1 300 -12 190 321 18 0 chr3 224124038 224124094 -3400484 - L3 LINE CR1 -1 1576 1520 1532 91 18 5 chr3 224124206 224124426 -3400152 + AluSg/x SINE Alu 85 307 -5 1223 118 26 26 chr3 224124950 224125145 -3399433 + AluJo SINE Alu 106 300 -12 306 0 0 0 chr3 224125165 224125199 -3399379 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2234 111 3 0 chr3 224125443 224125741 -3398837 + AluSp SINE Alu 1 299 -14 271 177 129 0 chr3 224126236 224126298 -3398280 - MER2 DNA MER2_type -7 338 269 309 263 13 0 chr3 224126321 224126397 -3398181 - Tigger2 DNA MER2_type 0 2718 2642 1860 156 7 0 chr3 224126402 224126690 -3397888 + AluSx SINE Alu 1 290 -22 973 210 0 6 chr3 224126708 224126889 -3397689 + AluJb SINE Alu 118 297 -15 754 148 25 8 chr3 224126891 224127091 -3397487 - Tigger2 DNA MER2_type -72 2646 84 254 308 200 0 chr3 224127332 224127452 -3397126 - MIR SINE MIR -115 147 4 804 128 8 0 chr3 224127504 224127621 -3396957 - FLAM_C SINE Alu -12 131 14 544 190 63 17 chr3 224127789 224127963 -3396615 + L1M4 LINE L1 3117 3298 -2848 2527 53 0 7 chr3 224127965 224128266 -3396312 + AluY SINE Alu 1 299 -12 264 197 0 61 chr3 224128322 224128343 -3396235 + AluJb SINE Alu 120 141 -161 2261 101 3 0 chr3 224128343 224128639 -3395939 + AluSg SINE Alu 1 297 -13 264 197 0 61 chr3 224128639 224128683 -3395895 + AluJb SINE Alu 141 181 -121 698 231 0 15 chr3 224128685 224128815 -3395763 + FLAM_A SINE Alu 4 131 -2 1732 206 57 32 chr3 224128817 224129242 -3395336 + L1M4 LINE L1 3296 3709 -2437 1860 120 18 18 chr3 224129242 224129549 -3395029 - AluSx SINE Alu 0 307 1 1732 206 57 32 chr3 224129549 224129862 -3394716 + L1M4 LINE L1 3709 4999 -1147 904 189 61 10 chr3 224129869 224130065 -3394513 + L1MB7 LINE L1 5979 6184 0 971 179 114 0 chr3 224130614 224130798 -3393780 - AluJb SINE Alu -23 289 85 1224 184 28 23 chr3 224130919 224131137 -3393441 - MER20 DNA MER1_type 0 219 1 1830 127 84 0 chr3 224131204 224131479 -3393099 + AluSq SINE Alu 1 298 -15 218 116 23 0 chr3 224131488 224131531 -3393047 + (TAGA)n Simple_repeat Simple_repeat 3 46 0 1708 158 0 14 chr3 224131641 224131956 -3392622 + AluJb SINE Alu 1 311 0 257 250 68 23 chr3 224132017 224132105 -3392473 - MIR SINE MIR -61 201 110 317 267 119 0 chr3 224132370 224132471 -3392107 + L1MC5 LINE L1 7329 7441 -520 422 277 107 62 chr3 224132503 224132734 -3391844 + L1MC4 LINE L1 7537 7756 -286 2654 141 34 27 chr3 224132734 224133175 -3391403 + MER65A LTR ERV1 1 444 -1 422 277 107 62 chr3 224133175 224133427 -3391151 + L1MC4 LINE L1 7756 8042 0 2087 130 0 25 chr3 224133436 224133751 -3390827 + AluSx SINE Alu 1 307 -5 232 286 0 0 chr3 224134089 224134138 -3390440 - L3 LINE CR1 -2 1575 1527 626 262 94 20 chr3 224134432 224134634 -3389944 + L2 LINE L2 3075 3291 -22 2015 122 37 7 chr3 224134644 224134939 -3389639 - AluSx SINE Alu -8 304 1 1840 171 3 10 chr3 224135794 224136104 -3388474 - AluJb SINE Alu -4 308 1 1483 186 3 45 chr3 224136104 224136272 -3388306 - AluJb SINE Alu -14 298 147 198 0 0 0 chr3 224136272 224136294 -3388284 + (TA)n Simple_repeat Simple_repeat 1 22 0 1483 186 3 45 chr3 224136294 224136436 -3388142 - AluJb SINE Alu -165 147 1 329 192 121 30 chr3 224136468 224136567 -3388011 + L2 LINE L2 2909 3016 -297 3032 155 135 43 chr3 224136605 224136943 -3387635 - L1MD1 LINE L1 -53 6189 5884 282 56 0 0 chr3 224136943 224136979 -3387599 + (CA)n Simple_repeat Simple_repeat 2 37 0 3032 155 135 43 chr3 224136979 224137157 -3387421 - L1MD1 LINE L1 -358 5884 5724 2176 89 0 3 chr3 224137157 224137477 -3387101 - AluY SINE Alu 0 319 1 3032 155 135 43 chr3 224137477 224137666 -3386912 - L1MD1 LINE L1 -518 5724 5410 1074 83 0 0 chr3 224137666 224137799 -3386779 - AluSq/x SINE Alu -180 133 1 21 0 0 0 chr3 224137799 224137820 -3386758 + AT_rich Low_complexity Low_complexity 1 21 0 985 83 14 0 chr3 224137838 224137982 -3386596 - L1MC/D LINE L1 -910 5449 5304 260 229 0 0 chr3 224138008 224138056 -3386522 - MER77 LTR ERV1 -6 599 552 475 141 0 0 chr3 224138059 224138123 -3386455 - AluJ/FLAM SINE Alu -245 67 4 1387 236 58 10 chr3 224138126 224138524 -3386054 - L1MD1 LINE L1 -864 5282 4866 1409 227 60 98 chr3 224138581 224139170 -3385408 - MER77 LTR ERV1 -4 601 58 546 148 9 104 chr3 224139346 224139420 -3385158 - U6 snRNA snRNA 0 107 46 2309 85 0 41 chr3 224139420 224139737 -3384841 - AluY SINE Alu -7 304 1 546 148 9 104 chr3 224139737 224139777 -3384801 - U6 snRNA snRNA -61 46 4 529 280 23 14 chr3 224139863 224140077 -3384501 + HAL1 LINE L1 1085 1300 -1207 1536 231 84 14 chr3 224140125 224140540 -3384038 + HAL1 LINE L1 1420 1863 -644 753 226 54 6 chr3 224140922 224141090 -3383488 + MER69A DNA AcHobo 2 177 0 2132 112 23 3 chr3 224141164 224141468 -3383110 - AluSq SINE Alu -3 310 1 815 195 0 0 chr3 224141468 224141596 -3382982 - FLAM_A SINE Alu -5 128 1 2309 91 0 0 chr3 224142003 224142289 -3382289 - AluSx SINE Alu -26 286 1 1352 147 43 144 chr3 224142294 224142502 -3382076 - AluJo SINE Alu -8 294 129 315 0 0 0 chr3 224142502 224142537 -3382041 + (TG)n Simple_repeat Simple_repeat 2 36 0 1352 147 43 144 chr3 224142537 224142655 -3381923 - AluJo SINE Alu -173 129 1 274 268 56 0 chr3 224143080 224143151 -3381427 + L2 LINE L2 3154 3228 -44 198 196 22 0 chr3 224143375 224143421 -3381157 + L2 LINE L2 3208 3254 -18 2043 108 9 54 chr3 224143970 224144105 -3380473 + AluSx SINE Alu 1 140 -172 2294 99 3 0 chr3 224144105 224144408 -3380170 + AluSp SINE Alu 1 304 -9 2043 108 9 54 chr3 224144408 224144587 -3379991 + AluSx SINE Alu 140 301 -11 2293 121 0 0 chr3 224144901 224145199 -3379379 - AluSx SINE Alu -14 298 1 293 182 0 18 chr3 224145331 224145386 -3379192 + Tigger5 DNA MER2_type 2254 2307 -16 760 156 0 30 chr3 224145417 224145552 -3379026 - FLAM_C SINE Alu 0 133 3 262 59 0 0 chr3 224145553 224145587 -3378991 + Tigger5 DNA MER2_type 2290 2323 0 3591 67 16 0 chr3 224145782 224146233 -3378345 - LTR22A LTR ERVK 0 458 1 1037 236 49 56 chr3 224146999 224147090 -3377488 + L1MC5 LINE L1 5574 5664 -2144 792 208 0 0 chr3 224147090 224147220 -3377358 + FLAM_C SINE Alu 2 131 -2 1037 236 49 56 chr3 224147220 224147518 -3377060 + L1MC5 LINE L1 5664 5960 -1848 2183 130 54 23 chr3 224147869 224148222 -3376356 + THE1B LTR MaLR 1 364 0 12546 79 3 1 chr3 224148222 224149799 -3374779 + THE1B-int LTR MaLR 1 1580 0 2205 135 33 28 chr3 224149799 224150161 -3374417 + THE1B LTR MaLR 1 364 0 738 210 28 47 chr3 224150356 224150570 -3374008 + L1MC5 LINE L1 6650 6859 -1102 559 187 94 35 chr3 224150570 224150741 -3373837 + L1MC5 LINE L1 7234 7414 -547 1713 183 7 3 chr3 224150745 224151030 -3373548 + AluJo SINE Alu 9 294 -18 614 127 15 97 chr3 224151048 224151182 -3373396 + FLAM_A SINE Alu 20 142 0 538 213 91 44 chr3 224151194 224151933 -3372645 + L1MC5 LINE L1 6876 7835 -126 2504 84 3 0 chr3 224151933 224152241 -3372337 - AluSx SINE Alu -3 309 1 538 213 91 44 chr3 224152241 224152324 -3372254 + L1MC5 LINE L1 7835 7913 -48 222 37 0 0 chr3 224152330 224152357 -3372221 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1617 164 19 45 chr3 224152409 224152719 -3371859 - AluJb SINE Alu -10 302 1 274 348 8 42 chr3 224152719 224152837 -3371741 + MIR SINE MIR 21 134 -128 * 649 286 122 40 chr3 224152812 224153116 -3371462 + L2 LINE L2 2983 3311 -2 965 213 0 0 chr3 224153291 224153465 -3371113 + FAM SINE Alu 2 175 0 715 166 6 46 chr3 224153465 224153586 -3370992 + L1MA4 LINE L1 6131 6244 -56 1740 160 20 10 chr3 224153586 224153880 -3370698 + AluSx SINE Alu 1 297 -15 715 166 6 46 chr3 224153880 224153933 -3370645 + L1MA4 LINE L1 6244 6298 -2 2348 111 3 0 chr3 224154398 224154696 -3369882 - AluSq SINE Alu -14 299 1 210 239 22 0 chr3 224154764 224154810 -3369768 + MIR SINE MIR 96 142 -66 1751 188 30 0 chr3 224155161 224155464 -3369114 + AluJo SINE Alu 1 312 0 783 157 0 25 chr3 224156194 224156315 -3368263 + AluJb SINE Alu 2 119 -193 1976 162 10 0 chr3 224156334 224156642 -3367936 + AluJb SINE Alu 1 311 -1 225 94 0 0 chr3 224156660 224156692 -3367886 + (TTTC)n Simple_repeat Simple_repeat 3 34 0 470 295 13 19 chr3 224156769 224156925 -3367653 - MIR3 SINE MIR -15 193 39 2264 114 3 0 chr3 224157116 224157423 -3367155 + AluSq SINE Alu 1 308 -5 691 272 51 0 chr3 224157664 224157859 -3366719 - MIR SINE MIR -1 261 57 2377 84 0 0 chr3 224157876 224158184 -3366394 - AluSx SINE Alu 0 308 1 219 286 14 71 chr3 224158185 224158255 -3366323 - MIR SINE MIR -195 67 2 243 299 56 9 chr3 224158277 224158384 -3366194 + L2 LINE L2 2715 2826 -488 283 316 42 0 chr3 224158392 224158487 -3366091 + MIR SINE MIR 94 192 -70 2293 121 0 0 chr3 224158769 224159067 -3365511 - AluSx SINE Alu -14 298 1 272 182 0 18 chr3 224159199 224159254 -3365324 + Tigger5 DNA MER2_type 2254 2307 -16 704 182 0 8 chr3 224159288 224159420 -3365158 - FLAM_C SINE Alu 0 133 3 252 59 0 0 chr3 224159421 224159455 -3365123 + Tigger5 DNA MER2_type 2290 2323 0 3591 67 16 0 chr3 224159650 224160101 -3364477 - LTR22A LTR ERVK 0 458 1 1037 236 49 56 chr3 224160867 224160958 -3363620 + L1MC5 LINE L1 5574 5664 -2144 792 208 0 0 chr3 224160958 224161088 -3363490 + FLAM_C SINE Alu 2 131 -2 1037 236 49 56 chr3 224161088 224161386 -3363192 + L1MC5 LINE L1 5664 5960 -1848 2183 130 54 23 chr3 224161737 224162090 -3362488 + THE1B LTR MaLR 1 364 0 12546 79 3 1 chr3 224162090 224163667 -3360911 + THE1B-int LTR MaLR 1 1580 0 2205 135 33 28 chr3 224163667 224164029 -3360549 + THE1B LTR MaLR 1 364 0 738 210 28 47 chr3 224164224 224164438 -3360140 + L1MC5 LINE L1 6650 6859 -1102 559 187 94 35 chr3 224164438 224164609 -3359969 + L1MC5 LINE L1 7234 7414 -547 1713 183 7 3 chr3 224164613 224164898 -3359680 + AluJo SINE Alu 9 294 -18 614 127 15 97 chr3 224164916 224165050 -3359528 + FLAM_A SINE Alu 20 142 0 538 213 91 44 chr3 224165062 224165801 -3358777 + L1MC5 LINE L1 6876 7835 -126 2504 84 3 0 chr3 224165801 224166109 -3358469 - AluSx SINE Alu -3 309 1 538 213 91 44 chr3 224166109 224166192 -3358386 + L1MC5 LINE L1 7835 7913 -48 222 37 0 0 chr3 224166198 224166225 -3358353 + (TAAA)n Simple_repeat Simple_repeat 2 28 0 1548 161 19 55 chr3 224166277 224166587 -3357991 - AluJb SINE Alu -13 299 1 433 328 104 10 chr3 224166587 224166788 -3357790 + MIR SINE MIR 21 240 -22 814 130 0 0 chr3 224167104 224167219 -3357359 + FLAM_C SINE Alu 3 117 -16 2178 97 0 17 chr3 224167230 224167530 -3357048 - AluSx SINE Alu -17 295 1 299 216 50 93 chr3 224167560 224167699 -3356879 + L2 LINE L2 3161 3293 -20 840 205 80 4 chr3 224168143 224168382 -3356196 - AluSx SINE Alu -21 291 35 776 133 0 0 chr3 224168608 224168721 -3355857 - AluSq/x SINE Alu -198 114 2 207 254 42 56 chr3 224168731 224168802 -3355776 - L2 LINE L2 -1082 2232 2163 483 261 130 34 chr3 224168994 224169232 -3355346 - L2 LINE L2 -1144 2170 1910 350 319 64 5 chr3 224169331 224169519 -3355059 - L2 LINE L2 -1817 1497 1299 2199 110 7 0 chr3 224170132 224170423 -3354155 - AluSq SINE Alu -20 293 1 769 321 134 33 chr3 224170431 224171279 -3353299 - L2 LINE L2 -767 2547 1614 336 212 61 115 chr3 224172123 224172288 -3352290 + MIR3 SINE MIR 6 161 -47 27 0 0 0 chr3 224172817 224172844 -3351734 + GC_rich Low_complexity Low_complexity 1 27 0 336 210 16 54 chr3 224172910 224173096 -3351482 + (CGG)n Simple_repeat Simple_repeat 2 180 0 310 243 61 81 chr3 224173404 224173552 -3351026 - MIR3 SINE MIR -58 150 6 757 132 0 0 chr3 224174313 224174419 -3350159 - FLAM_C SINE Alu -36 107 2 393 233 54 23 chr3 224179398 224179512 -3345066 - L1M4 LINE L1 -869 5277 5157 6099 44 0 44 chr3 224179512 224180260 -3344318 - SVA Other Other 0 1386 672 393 233 54 23 chr3 224180260 224180274 -3344304 - L1M4 LINE L1 -989 5157 5145 493 265 124 16 chr3 224180326 224180583 -3343995 + L1ME LINE L1 5320 5604 -558 2005 93 4 4 chr3 224180596 224180864 -3343714 + AluSx SINE Alu 1 268 -44 351 0 0 0 chr3 224181040 224181079 -3343499 + (A)n Simple_repeat Simple_repeat 1 39 0 630 268 26 7 chr3 224181711 224181864 -3342714 + MIR SINE MIR 81 236 -26 27 29 0 0 chr3 224183835 224183869 -3340709 + GC_rich Low_complexity Low_complexity 1 34 0 314 284 0 21 chr3 224184178 224184273 -3340305 + CT-rich Low_complexity Low_complexity 4 96 0 1854 121 13 54 chr3 224184648 224184961 -3339617 - AluSx SINE Alu -12 300 1 862 263 24 28 chr3 224185436 224185687 -3338891 + MIR SINE MIR 13 262 0 749 270 136 73 chr3 224185951 224186168 -3338410 - L1M4 LINE L1 -1306 4840 4638 2414 74 0 0 chr3 224186168 224186452 -3338126 + AluSg SINE Alu 15 298 -12 749 270 136 73 chr3 224186452 224186594 -3337984 - L1M4 LINE L1 -1508 4638 4506 2086 65 7 11 chr3 224186594 224186871 -3337707 + L1PA6 LINE L1 5878 6153 -1 749 270 136 73 chr3 224186871 224187678 -3336900 - L1M4 LINE L1 -1640 4506 3520 1452 194 109 0 chr3 224187692 224188012 -3336566 - MLT1F1 LTR MaLR 0 567 213 1989 154 3 3 chr3 224188344 224188650 -3335928 + AluJb SINE Alu 1 306 -6 1894 109 15 4 chr3 224188772 224189038 -3335540 + AluSg SINE Alu 39 307 -3 231 250 0 0 chr3 224189324 224189388 -3335190 - HAL1 LINE L1 -374 2133 2070 462 256 240 48 chr3 224189443 224190333 -3334245 - HAL1 LINE L1 -701 1806 746 344 315 31 8 chr3 224190698 224190828 -3333750 - HAL1 LINE L1 -2374 133 1 2285 102 0 0 chr3 224191439 224191742 -3332836 - AluSc SINE Alu -6 303 1 2032 147 16 0 chr3 224191751 224192057 -3332521 - AluSx SINE Alu -1 311 1 1797 172 17 3 chr3 224192058 224192348 -3332230 - AluJb SINE Alu -18 294 1 321 256 134 12 chr3 224192351 224192485 -3332093 - MIR SINE MIR -10 252 100 318 235 43 87 chr3 224193786 224193901 -3330677 + L3 LINE CR1 1361 1470 -107 1281 212 117 11 chr3 224194108 224194485 -3330093 + MLT1D LTR MaLR 4 420 -85 2181 120 0 0 chr3 224195048 224195339 -3329239 + AluSx SINE Alu 1 317 0 235 0 0 0 chr3 224195339 224195365 -3329213 + (TAAAA)n Simple_repeat Simple_repeat 2 180 0 824 337 64 32 chr3 224195379 224195815 -3328763 + L3 LINE CR1 1069 1518 -59 488 252 104 0 chr3 224196630 224196765 -3327813 + MIR3 SINE MIR 44 192 -16 180 77 0 0 chr3 224197490 224197516 -3327062 + (A)n Simple_repeat Simple_repeat 1 26 0 234 322 11 17 chr3 224198437 224198617 -3325961 + (CACCC)n Simple_repeat Simple_repeat 2 180 0 225 327 74 6 chr3 224198828 224198990 -3325588 + L2 LINE L2 2050 2222 -1092 1997 135 0 22 chr3 224199346 224199703 -3324875 - AluSx SINE Alu 0 312 1 271 224 15 15 chr3 224200368 224200435 -3324143 + CT-rich Low_complexity Low_complexity 3 69 0 229 290 100 0 chr3 224200470 224200570 -3324008 - MIR3 SINE MIR -11 197 88 2032 134 3 0 chr3 224201331 224201629 -3322949 - AluSx SINE Alu -13 299 1 2021 123 0 0 chr3 224202313 224202664 -3321914 + AluSq SINE Alu 1 351 0 2825 193 72 15 chr3 224203070 224203098 -3321480 - L1MB3 LINE L1 -3 6180 6155 2232 103 3 0 chr3 224203098 224203399 -3321179 - AluSx SINE Alu -10 302 1 2825 193 72 15 chr3 224203399 224203686 -3320892 - L1MB3 LINE L1 -28 6155 5886 2240 93 0 10 chr3 224203686 224203997 -3320581 - AluSx SINE Alu -4 308 1 2825 193 72 15 chr3 224203997 224204471 -3320107 - L1MB3 LINE L1 -297 5886 5302 220 384 54 0 chr3 224204957 224205069 -3319509 - MIR SINE MIR -37 225 108 905 102 11 34 chr3 224205324 224205501 -3319077 + (TCCCC)n Simple_repeat Simple_repeat 5 177 0 328 192 34 14 chr3 224205580 224205690 -3318888 + L1MC1 LINE L1 6031 6117 -216 195 286 114 0 chr3 224205749 224205819 -3318759 + L2 LINE L2 3192 3269 -3 193 311 40 0 chr3 224205939 224206013 -3318565 + L3 LINE CR1 1298 1374 -203 1451 124 18 9 chr3 224206032 224206257 -3318321 + AluSg/x SINE Alu 77 303 -7 450 358 93 16 chr3 224207011 224207324 -3317254 - L1MC4a LINE L1 -1804 6004 5668 756 159 0 65 chr3 224207367 224207505 -3317073 - FLAM_C SINE Alu -2 131 3 2154 79 0 0 chr3 224208411 224208688 -3315890 - AluY SINE Alu -34 277 1 440 291 67 0 chr3 224208897 224209031 -3315547 + MIR SINE MIR 34 176 -86 701 272 44 5 chr3 224209039 224209059 -3315519 + MER20 DNA MER1_type 1 19 -200 282 29 0 0 chr3 224209059 224209094 -3315484 + (TG)n Simple_repeat Simple_repeat 2 36 0 701 272 44 5 chr3 224209094 224209279 -3315299 + MER20 DNA MER1_type 19 214 -5 2271 90 0 22 chr3 224209514 224209826 -3314752 + AluSx SINE Alu 1 305 -7 224 29 0 29 chr3 224210734 224210768 -3313810 + (GAAA)n Simple_repeat Simple_repeat 3 35 0 2376 81 3 0 chr3 224213344 224213654 -3310924 + AluY SINE Alu 1 311 0 440 273 48 48 chr3 224214045 224214210 -3310368 + MIR3 SINE MIR 38 202 -6 375 281 20 34 chr3 224214429 224214575 -3310003 + MER5A DNA MER1_type 3 146 -43 517 216 0 26 chr3 224214587 224214703 -3309875 - MIR SINE MIR 0 262 150 285 273 11 11 chr3 224215007 224215095 -3309483 + MIR3 SINE MIR 109 196 -12 311 251 217 13 chr3 224215319 224215478 -3309100 - MIR3 SINE MIR -10 198 12 219 327 9 45 chr3 224216369 224216479 -3308099 - MIR3 SINE MIR -7 201 96 1057 355 68 42 chr3 224216748 224217672 -3306906 - L3 LINE CR1 -2 1575 628 2301 87 3 0 chr3 224217710 224218009 -3306569 + AluSg SINE Alu 1 300 -10 289 345 17 9 chr3 224218617 224218733 -3305845 - MIR SINE MIR -72 190 74 258 32 0 0 chr3 224218786 224218817 -3305761 + (CA)n Simple_repeat Simple_repeat 2 32 0 303 365 54 47 chr3 224219430 224219726 -3304852 - L2 LINE L2 -58 3214 2917 507 243 7 35 chr3 224222555 224222699 -3301879 - L1ME3A LINE L1 0 6170 6031 249 293 86 29 chr3 224224666 224224806 -3299772 - MIR SINE MIR 0 262 115 2310 102 0 3 chr3 224225849 224226162 -3298416 + AluSx SINE Alu 1 312 0 467 285 76 12 chr3 224226200 224226372 -3298206 - MIR3 SINE MIR -5 203 21 2193 104 0 3 chr3 224226967 224227266 -3297312 - AluSc SINE Alu -11 298 1 311 329 66 36 chr3 224227366 224227503 -3297075 - MIR3 SINE MIR -63 145 5 474 140 28 28 chr3 224228041 224228220 -3296358 + (CA)n Simple_repeat Simple_repeat 1 179 0 357 235 14 5 chr3 224228299 224228742 -3295836 + (CA)n Simple_repeat Simple_repeat 1 447 0 502 195 17 8 chr3 224228763 224229009 -3295569 + (CA)n Simple_repeat Simple_repeat 1 248 0 409 340 7 13 chr3 224229016 224229169 -3295409 - L3 LINE CR1 -102 1475 1324 299 183 28 0 chr3 224229970 224230041 -3294537 - MER94 DNA DNA -1 133 61 36 40 0 0 chr3 224230059 224230109 -3294469 + AT_rich Low_complexity Low_complexity 1 50 0 773 158 8 8 chr3 224230109 224230236 -3294342 - FLAM_A SINE Alu -6 127 1 530 292 23 65 chr3 224230327 224230543 -3294035 - MIR SINE MIR -8 254 48 256 309 49 45 chr3 224230637 224230843 -3293735 - L2 LINE L2 -1 3271 3062 2525 56 0 0 chr3 224230843 224231148 -3293430 + AluSq SINE Alu 1 305 -8 256 309 49 45 chr3 224231148 224231184 -3293394 - L2 LINE L2 -210 3062 3028 218 254 75 30 chr3 224231398 224231465 -3293113 + MER5B DNA MER1_type 10 79 -99 1171 144 0 5 chr3 224231465 224231660 -3292918 + MER41D LTR ERV1 1 194 -363 2330 92 0 10 chr3 224231905 224232219 -3292359 - AluSq SINE Alu -2 311 1 2233 82 3 0 chr3 224233163 224233454 -3291124 + AluSc SINE Alu 1 292 -17 847 173 0 0 chr3 224233881 224234014 -3290564 - FLAM_A SINE Alu 0 133 1 184 304 0 0 chr3 224234249 224234295 -3290283 + L2 LINE L2 3224 3269 -3 2221 100 6 31 chr3 224234636 224234956 -3289622 - AluSq SINE Alu 0 313 2 305 222 0 0 chr3 224234986 224235047 -3289531 + MIR SINE MIR 90 150 -58 239 246 0 183 chr3 224235047 224235173 -3289405 - MER5B DNA MER1_type -3 175 73 1765 199 22 11 chr3 224235179 224235541 -3289037 - MER41D LTR ERV1 0 557 192 5559 69 21 22 chr3 224235541 224236307 -3288271 - MER4E LTR ERV1 0 766 2 552 273 126 21 chr3 224239226 224239464 -3285114 + Charlie8 DNA MER1_type 1 263 -2154 749 293 0 22 chr3 224239497 224239726 -3284852 + MIR SINE MIR 39 262 0 2111 112 3 13 chr3 224240286 224240599 -3283979 + AluSg SINE Alu 1 310 0 1020 196 11 0 chr3 224241193 224241377 -3283201 - AluJo SINE Alu -6 306 121 531 223 134 0 chr3 224242142 224242299 -3282279 - MER115 DNA AcHobo -503 190 13 781 324 5 0 chr3 224242419 224242638 -3281940 + MIR SINE MIR 36 255 -7 303 199 0 35 chr3 224243517 224243688 -3280890 + (CAGCC)n Simple_repeat Simple_repeat 3 167 0 182 210 0 34 chr3 224243699 224243818 -3280760 + (CAGCC)n Simple_repeat Simple_repeat 3 117 0 258 269 13 0 chr3 224243987 224244065 -3280513 + L1MC/D LINE L1 5719 5797 -2011 1657 187 10 7 chr3 224244097 224244402 -3280176 + AluJb SINE Alu 1 306 -6 2323 78 0 0 chr3 224244567 224244862 -3279716 + AluSq SINE Alu 1 295 -18 191 259 19 0 chr3 224245002 224245056 -3279522 + MIR SINE MIR 189 243 -19 22 70 0 0 chr3 224445363 224445406 -3079172 + AT_rich Low_complexity Low_complexity 1 43 0 2174 82 0 0 chr3 224445506 224445785 -3078793 - AluY SINE Alu -1 310 32 1936 133 6 19 chr3 224445871 224446186 -3078392 - AluSp SINE Alu -2 311 1 2300 119 0 0 chr3 224446797 224447100 -3077478 - AluSx SINE Alu -9 303 1 2348 87 3 0 chr3 224447415 224447713 -3076865 + AluSq SINE Alu 1 299 -14 1290 99 12 0 chr3 224448152 224448323 -3076255 + AluSc SINE Alu 126 298 -11 1749 189 0 0 chr3 224448323 224448604 -3075974 - AluJo SINE Alu -30 282 2 1372 94 0 0 chr3 224448923 224449103 -3075475 - AluSg/x SINE Alu -3 309 130 251 314 102 8 chr3 224449572 224449690 -3074888 - MIR SINE MIR -16 246 118 1273 60 0 0 chr3 224450103 224450252 -3074326 - AluY SINE Alu -162 149 1 309 329 42 14 chr3 224450401 224450544 -3074034 + L2 LINE L2 3166 3312 -1 1091 108 0 2 chr3 224450671 224450923 -3073655 + AluSx SINE Alu 1 311 -1 465 134 5 43 chr3 224451190 224451376 -3073202 + (CA)n Simple_repeat Simple_repeat 2 180 0 2193 104 33 7 chr3 224452068 224452367 -3072211 - AluSq SINE Alu -5 308 2 268 296 149 34 chr3 224452713 224453101 -3071477 - HAL1 LINE L1 -353 2154 1722 243 204 0 0 chr3 224453155 224453199 -3071379 - HAL1 LINE L1 -982 1525 1482 1261 242 26 58 chr3 224453200 224453517 -3071061 - L1MEc LINE L1 -1272 5056 4755 2150 145 0 3 chr3 224453517 224453828 -3070750 - AluSx SINE Alu -2 310 1 1261 242 26 58 chr3 224453828 224453939 -3070639 - L1MEc LINE L1 -1573 4755 4642 1075 217 120 62 chr3 224453939 224454013 -3070565 - MSTD LTR MaLR 0 396 328 1165 194 170 8 chr3 224454013 224454266 -3070312 + AluSx SINE Alu 1 294 -8 1075 217 120 62 chr3 224454266 224454565 -3070013 - MSTD LTR MaLR -68 328 1 1818 264 63 34 chr3 224454565 224455278 -3069300 - L1MEc LINE L1 -1682 4646 3913 2221 136 0 0 chr3 224455284 224455594 -3068984 + AluSx SINE Alu 1 310 -2 2790 241 87 25 chr3 224455602 224456155 -3068423 - L1MEc LINE L1 -2795 3533 3015 2283 110 3 0 chr3 224456155 224456456 -3068122 - AluSg SINE Alu -8 302 1 2149 106 7 0 chr3 224456461 224456745 -3067833 - AluSx SINE Alu -26 286 1 2790 241 87 25 chr3 224456745 224457246 -3067332 - L1MEc LINE L1 -3316 3012 2408 1423 189 37 39 chr3 224457319 224457674 -3066904 - L1MB8 LINE L1 -12 6166 5813 1072 279 60 40 chr3 224457685 224457729 -3066849 - L1MEc LINE L1 -4535 1974 1932 1890 161 15 18 chr3 224457729 224458065 -3066513 + MER1B DNA MER1_type 1 335 -2 1072 279 60 40 chr3 224458065 224458433 -3066145 - L1MEc LINE L1 -4577 1932 1546 1787 153 6 40 chr3 224458433 224458754 -3065824 - AluJb SINE Alu -2 310 1 1072 279 60 40 chr3 224458754 224458893 -3065685 - L1MEc LINE L1 -4963 1546 1411 4156 159 42 28 chr3 224458915 224459676 -3064902 - L1M4 LINE L1 -4554 774 3 1295 263 94 97 chr3 224459707 224459776 -3064802 - HAL1 LINE L1 -1302 1205 1137 2342 107 0 0 chr3 224459776 224460074 -3064504 - AluSx SINE Alu -9 303 6 1295 263 94 97 chr3 224460074 224461210 -3063368 - HAL1 LINE L1 -1370 1137 3 2481 50 7 3 chr3 224461986 224462285 -3062293 - AluY SINE Alu -11 300 1 22 35 0 0 chr3 224462333 224462362 -3062216 + AT_rich Low_complexity Low_complexity 1 29 0 2454 165 54 10 chr3 224462836 224463320 -3061258 + LTR22 LTR ERVK 1 505 -4 2072 124 6 43 chr3 224463866 224464163 -3060415 + MER1B DNA MER1_type 2 286 -2424 2224 88 30 7 chr3 224464163 224464458 -3060120 + AluSq SINE Alu 1 302 -11 2072 124 6 43 chr3 224464458 224464508 -3060070 + MER1B DNA MER1_type 286 336 -1 362 340 40 36 chr3 224464768 224465021 -3059557 + L2 LINE L2 2597 2850 -464 2406 80 3 0 chr3 224466327 224466629 -3057949 - AluY SINE Alu -8 303 1 1110 257 85 67 chr3 224466634 224466804 -3057774 + L1ME3A LINE L1 4583 4748 -1414 1998 152 7 0 chr3 224466804 224467101 -3057477 + AluJb SINE Alu 1 299 -13 1110 257 85 67 chr3 224467101 224467470 -3057108 + L1ME3A LINE L1 4748 5109 -1053 2326 98 0 0 chr3 224467470 224467766 -3056812 + AluSg SINE Alu 4 299 -11 1110 257 85 67 chr3 224467766 224467968 -3056610 + L1ME3A LINE L1 5109 5306 -856 1902 99 161 31 chr3 224467968 224468290 -3056288 + THE1B LTR MaLR 1 364 0 1110 257 85 67 chr3 224468290 224468589 -3055989 + L1ME3A LINE L1 5306 5650 -512 460 243 149 7 chr3 224468593 224468741 -3055837 + MER112 DNA MER1_type 2 170 -90 187 259 19 0 chr3 224468779 224468833 -3055745 - MER5B DNA MER1_type 0 178 124 938 28 0 0 chr3 224468841 224468948 -3055630 + U6 snRNA snRNA 1 107 0 6885 8 0 0 chr3 224468948 224469702 -3054876 + L1PA2 LINE L1 5402 6155 0 204 159 0 0 chr3 224469702 224469737 -3054841 + A-rich Low_complexity Low_complexity 6 45 0 243 244 49 37 chr3 224469763 224469845 -3054733 - MER5B DNA MER1_type -81 97 15 649 259 115 10 chr3 224469909 224470171 -3054407 + L1ME3A LINE L1 5690 5944 -226 1116 130 12 0 chr3 224470331 224470492 -3054086 - AluSg/x SINE Alu -13 297 135 418 174 0 14 chr3 224470528 224470597 -3053981 + MER20 DNA MER1_type 152 219 0 566 278 23 6 chr3 224470604 224470777 -3053801 + MER46C DNA MER2_type 161 336 -2 2226 110 0 7 chr3 224471807 224472106 -3052472 - AluSx SINE Alu -15 297 1 878 162 0 0 chr3 224472106 224472242 -3052336 - AluJb SINE Alu -176 136 1 2293 81 3 0 chr3 224472840 224473147 -3051431 + AluY SINE Alu 1 308 0 2196 123 48 23 chr3 224473307 224473658 -3050920 + THE1B LTR MaLR 1 360 -4 1931 147 40 0 chr3 224473967 224474267 -3050311 + AluSx SINE Alu 1 312 0 203 344 0 0 chr3 224474400 224474464 -3050114 + MIR SINE MIR 15 78 -184 1062 211 183 0 chr3 224474481 224474713 -3049865 + L1MD3 LINE L1 6780 7075 -920 192 77 0 0 chr3 224474713 224474739 -3049839 + (TAAA)n Simple_repeat Simple_repeat 4 29 0 1062 211 183 0 chr3 224474739 224474791 -3049787 + L1MD3 LINE L1 7075 7116 -879 375 258 0 21 chr3 224474792 224474885 -3049693 + MLT1F1 LTR MaLR 36 126 -441 2990 173 42 12 chr3 224474885 224475458 -3049120 + L1MD3 LINE L1 7405 7994 -1 2746 156 47 36 chr3 224475469 224476045 -3048533 + L1MB7 LINE L1 5585 6166 -18 4586 200 148 12 chr3 224476293 224476424 -3048154 - Charlie1a DNA MER1_type -1307 1454 1342 2268 117 0 0 chr3 224476424 224476732 -3047846 + AluSx SINE Alu 1 308 -4 4586 200 148 12 chr3 224476732 224477881 -3046697 - Charlie1a DNA MER1_type -1419 1342 1 2417 65 0 3 chr3 224478257 224478548 -3046030 + AluSc SINE Alu 10 299 -10 660 124 0 0 chr3 224479227 224479316 -3045262 - AluS SINE Alu -223 90 2 2016 50 22 54 chr3 224479549 224479826 -3044752 + AluY SINE Alu 1 268 -43 855 226 23 6 chr3 224480098 224480275 -3044303 + LTR41 LTR ERVL 3 182 -591 1163 202 64 84 chr3 224480407 224480764 -3043814 + LTR41 LTR ERVL 417 766 -7 2027 84 29 52 chr3 224480835 224480944 -3043634 - AluSp SINE Alu 0 303 193 230 0 0 32 chr3 224480944 224480975 -3043603 + (TCTCCC)n Simple_repeat Simple_repeat 1 30 0 7561 50 14 14 chr3 224480975 224482501 -3042077 + SVA Other Other 57 1386 0 2027 84 29 52 chr3 224482501 224482696 -3041882 - AluSp SINE Alu -108 195 1 2195 119 0 0 chr3 224483102 224483405 -3041173 + AluSx SINE Alu 3 305 -7 640 152 50 0 chr3 224483419 224483518 -3041060 + FLAM_A SINE Alu 13 116 -26 1453 184 117 81 chr3 224483521 224483826 -3040752 + L1MB7 LINE L1 5785 6108 -76 2438 92 0 22 chr3 224483826 224484143 -3040435 + AluSg SINE Alu 1 310 0 1453 184 117 81 chr3 224484143 224484222 -3040356 + L1MB7 LINE L1 6108 6183 -1 503 323 26 22 chr3 224484314 224484540 -3040038 + MARNA DNA Mariner 347 573 -13 1617 175 3 14 chr3 224484692 224485011 -3039567 + AluSx SINE Alu 1 316 0 324 264 0 0 chr3 224485201 224485273 -3039305 + MER81 DNA DNA 43 114 0 277 314 108 59 chr3 224485280 224485567 -3039011 + L2 LINE L2 2972 3272 0 23 33 0 0 chr3 224486047 224486077 -3038501 + AT_rich Low_complexity Low_complexity 1 30 0 2782 116 97 62 chr3 224486252 224486787 -3037791 + LTR10A LTR ERV1 1 596 -37 2315 112 0 0 chr3 224486787 224487090 -3037488 - AluSg SINE Alu -7 303 1 2782 116 97 62 chr3 224487090 224487108 -3037470 + LTR10A LTR ERV1 596 612 -21 2112 125 3 0 chr3 224487592 224487888 -3036690 + AluSg SINE Alu 1 297 -13 2274 111 3 0 chr3 224487890 224488188 -3036390 + AluSp SINE Alu 3 301 -12 238 193 108 48 chr3 224488296 224488379 -3036199 + L1MC1 LINE L1 5379 5466 -655 625 187 58 27 chr3 224490153 224490353 -3034225 + AluJb SINE Alu 2 264 -48 1982 81 85 4 chr3 224490389 224490661 -3033917 + AluSg SINE Alu 1 294 -16 1829 143 32 11 chr3 224490754 224491065 -3033513 + AluSx SINE Alu 1 312 0 1953 182 16 30 chr3 224491382 224491465 -3033113 + L1MB3 LINE L1 5750 5833 -350 1414 125 88 128 chr3 224491465 224491603 -3032975 - MER46B DNA MER2_type -2495 236 94 2302 108 7 0 chr3 224491603 224491908 -3032670 + AluSq SINE Alu 1 307 -6 1414 125 88 128 chr3 224491908 224491992 -3032586 - MER46B DNA MER2_type -2637 94 157 1960 139 3 3 chr3 224491992 224492280 -3032298 - AluSx SINE Alu -24 288 1 1414 125 88 128 chr3 224492280 224492431 -3032147 - MER46B DNA MER2_type -2573 158 2 1953 182 16 30 chr3 224492431 224492787 -3031791 + L1MB3 LINE L1 5833 6183 0 1112 168 13 58 chr3 224493294 224493356 -3031222 + AluJo SINE Alu 84 147 -165 2261 105 0 10 chr3 224493356 224493660 -3030918 + AluSq SINE Alu 1 301 -12 1112 168 13 58 chr3 224493660 224493823 -3030755 + AluJo SINE Alu 147 299 -13 1565 151 16 8 chr3 224493823 224494081 -3030497 + L1MC1 LINE L1 5435 5694 -650 * 3880 178 84 10 chr3 224494080 224494873 -3029705 + L1MB3 LINE L1 5330 6181 -2 3028 154 87 29 chr3 224494860 224495484 -3029094 + L1MC1 LINE L1 5673 6332 -1 * 393 299 75 29 chr3 224495956 224496130 -3028448 + L1M4 LINE L1 2631 2812 -3334 320 373 6 13 chr3 224496147 224496305 -3028273 + L1M4 LINE L1 2876 3032 -3114 499 116 0 0 chr3 224496321 224496390 -3028188 + U4 snRNA snRNA 1 69 -76 672 286 156 24 chr3 224496460 224496799 -3027779 + L1M4 LINE L1 3101 3484 -2662 2226 86 7 0 chr3 224496815 224497116 -3027462 - AluSp SINE Alu -10 303 1 876 87 48 0 chr3 224497523 224497649 -3026929 + AluY SINE Alu 1 132 -179 2067 81 3 14 chr3 224497833 224498130 -3026448 + AluSx SINE Alu 3 296 -16 1696 53 9 9 chr3 224498297 224498522 -3026056 + AluSq SINE Alu 1 225 -88 8594 50 1 13 chr3 224498528 224499571 -3025007 + MER11C LTR ERVK 34 1063 -8 735 111 0 0 chr3 224499571 224499679 -3024899 + AluSg/x SINE Alu 205 312 0 2136 99 3 10 chr3 224499695 224499989 -3024589 + AluSp SINE Alu 1 292 -21 2254 86 20 0 chr3 224500654 224500955 -3023623 + AluSp SINE Alu 1 307 -6 619 222 127 32 chr3 224501169 224501390 -3023188 - L1ME3 LINE L1 -22 6140 5899 1053 61 0 0 chr3 224501391 224501522 -3023056 + AluSg1 SINE Alu 1 131 -178 923 253 62 0 chr3 224501532 224501805 -3022773 - L1ME3 LINE L1 -252 5910 5621 902 294 50 11 chr3 224501802 224502166 -3022412 - L1ME3 LINE L1 -1749 4397 4020 * 2124 112 0 0 chr3 224502311 224502607 -3021971 - AluSg SINE Alu -13 297 2 1397 284 54 23 chr3 224502640 224503004 -3021574 - L1ME3 LINE L1 -2168 3978 3627 1582 107 0 0 chr3 224503004 224503219 -3021359 - AluSg/x SINE Alu -7 305 91 1397 284 54 23 chr3 224503219 224503558 -3021020 - L1ME3 LINE L1 -2519 3627 3253 2380 189 108 8 chr3 224503570 224504100 -3020478 - L1MD3 LINE L1 -9 7986 7404 266 145 16 97 chr3 224504100 224504162 -3020416 - MLT1F1 LTR MaLR -442 125 69 315 176 255 0 chr3 224504180 224504282 -3020296 - L1MC3 LINE L1 -663 7122 6995 410 157 29 0 chr3 224504796 224504866 -3019712 + L2 LINE L2 3201 3272 0 21 0 0 0 chr3 224505559 224505580 -3018998 + AT_rich Low_complexity Low_complexity 1 21 0 602 269 48 6 chr3 224505621 224505788 -3018790 - MIR3 SINE MIR -3 205 32 2396 60 0 0 chr3 224505942 224506240 -3018338 + AluY SINE Alu 1 298 -13 2004 92 7 16 chr3 224506673 224506976 -3017602 + AluSq SINE Alu 1 300 -13 1361 165 61 122 chr3 224506976 224507369 -3017209 + L1MB8 LINE L1 5432 5800 -384 1749 136 40 3 chr3 224507369 224507730 -3016848 - AluJo SINE Alu 0 372 1 1635 157 21 3 chr3 224507730 224508016 -3016562 + L1MB8 LINE L1 5789 6079 -99 437 57 143 0 chr3 224508165 224508235 -3016343 - MADE1 DNA Mariner 0 80 1 444 315 34 55 chr3 224508693 224508903 -3015675 - MIR3 SINE MIR -5 203 2 1177 67 61 0 chr3 224509051 224509216 -3015362 - AluSg/x SINE Alu -6 304 130 1989 109 51 3 chr3 224509219 224509513 -3015065 - AluSx SINE Alu -4 308 1 409 267 98 41 chr3 224511092 224511249 -3013329 + L1MEd LINE L1 896 1043 -5267 2146 103 10 0 chr3 224511249 224511550 -3013028 + AluSp SINE Alu 1 304 -9 409 267 98 41 chr3 224511550 224511983 -3012595 + L1MEd LINE L1 1043 1575 -4735 2018 117 0 0 chr3 224512184 224512465 -3012113 + AluSx SINE Alu 1 281 -31 207 88 0 0 chr3 224512469 224512503 -3012075 + (CAATA)n Simple_repeat Simple_repeat 2 35 0 808 172 0 53 chr3 224512559 224512728 -3011850 - FAM SINE Alu -16 169 10 1483 160 22 128 chr3 224512738 224512850 -3011728 + L1MB4 LINE L1 5817 5939 -241 1534 201 0 3 chr3 224512850 224513133 -3011445 - AluJo SINE Alu -30 282 1 1483 160 22 128 chr3 224513133 224513262 -3011316 + L1MB4 LINE L1 5939 6000 -180 2281 86 0 19 chr3 224513262 224513577 -3011001 - AluY SINE Alu -2 309 1 1483 160 22 128 chr3 224513577 224513741 -3010837 + L1MB4 LINE L1 6000 6180 0 1598 161 41 0 chr3 224513770 224514062 -3010516 - AluJb SINE Alu -8 304 1 867 158 130 11 chr3 224514096 224514140 -3010438 + AluJo SINE Alu 85 122 -203 1865 142 7 7 chr3 224514140 224514450 -3010128 + AluSx SINE Alu 1 310 -2 867 158 130 11 chr3 224514450 224514625 -3009953 + AluJo SINE Alu 122 325 0 311 254 93 16 chr3 224514625 224514873 -3009705 + L1MEd LINE L1 3016 3282 -2847 1367 232 155 43 chr3 224514882 224515314 -3009264 + MER20B DNA MER1_type 97 609 -174 2200 59 0 21 chr3 224515314 224515629 -3008949 + AluY SINE Alu 1 309 0 1367 232 155 43 chr3 224515629 224515756 -3008822 + MER20B DNA MER1_type 609 720 -63 1004 265 42 12 chr3 224515784 224516116 -3008462 + L1MC4a LINE L1 5595 5936 -1872 396 0 0 0 chr3 224516132 224516176 -3008402 + (CA)n Simple_repeat Simple_repeat 2 45 0 630 141 141 0 chr3 224516223 224516351 -3008227 - L1MA9 LINE L1 0 6312 6167 27 0 0 0 chr3 224516884 224516911 -3007667 + AT_rich Low_complexity Low_complexity 1 27 0 2083 113 10 0 chr3 224516913 224517205 -3007373 + AluSg SINE Alu 1 295 -15 637 290 32 9 chr3 224517439 224517656 -3006922 + L1MB7 LINE L1 5364 5585 -577 2004 131 3 7 chr3 224517656 224517961 -3006617 + AluSx SINE Alu 1 304 -8 2249 87 3 7 chr3 224517961 224518271 -3006307 + AluY SINE Alu 1 309 -2 550 238 0 0 chr3 224518290 224518412 -3006166 + FLAM_C SINE Alu 6 127 -16 1102 146 0 0 chr3 224518480 224518658 -3005920 - AluSg/x SINE Alu -27 282 105 222 62 0 0 chr3 224518790 224518822 -3005756 + (T)n Simple_repeat Simple_repeat 1 32 0 1727 101 0 16 chr3 224518993 224519250 -3005328 - AluSx SINE Alu -16 296 44 2152 125 0 0 chr3 224519513 224519935 -3004643 - AluSx SINE Alu 0 422 1 1799 143 33 3 chr3 224520460 224520760 -3003818 - AluJo SINE Alu -3 309 1 186 325 156 0 chr3 224520790 224520867 -3003711 + MIR SINE MIR 167 255 -7 2126 118 0 0 chr3 224520904 224521217 -3003361 - AluSq SINE Alu 0 313 1 1221 257 101 23 chr3 224521563 224522046 -3002532 - LTR33 LTR ERVL 0 521 1 2046 101 7 0 chr3 224522142 224522440 -3002138 + AluSg SINE Alu 4 303 -7 645 152 50 0 chr3 224522454 224522553 -3002025 + FLAM_A SINE Alu 13 116 -26 1400 192 87 87 chr3 224522556 224522861 -3001717 + L1MB7 LINE L1 5785 6092 -92 2306 92 0 22 chr3 224522861 224523178 -3001400 + AluSg SINE Alu 1 310 0 1400 192 87 87 chr3 224523178 224523242 -3001336 + L1MB7 LINE L1 6091 6154 -30 471 332 26 22 chr3 224523350 224523576 -3001002 + MARNA DNA Mariner 347 573 -13 1506 175 3 14 chr3 224523728 224524047 -3000531 + AluSx SINE Alu 1 316 0 332 264 0 0 chr3 224524237 224524309 -3000269 + MER81 DNA DNA 43 114 0 492 285 91 64 chr3 224524309 224524607 -2999971 + L2 LINE L2 2967 3272 0 335 256 72 24 chr3 224525094 224525219 -2999359 - L1ME4a LINE L1 0 6121 5991 2772 113 99 64 chr3 224525291 224525826 -2998752 + LTR10A LTR ERV1 1 596 -37 2175 116 0 0 chr3 224525826 224526129 -2998449 - AluSg SINE Alu -7 303 1 2772 113 99 64 chr3 224526129 224526147 -2998431 + LTR10A LTR ERV1 596 612 -21 1636 77 0 5 chr3 224526370 224526591 -2997987 - AluSg/x SINE Alu -2 308 89 2301 87 0 3 chr3 224527374 224527685 -2996893 - AluSx SINE Alu -2 310 1 1282 169 13 8 chr3 224527685 224527921 -2996657 + L1MB8 LINE L1 5789 6025 -153 610 262 265 17 chr3 224528057 224528419 -2996159 - L2 LINE L2 -32 3281 2830 839 249 65 19 chr3 224528445 224528638 -2995940 - L1ME4a LINE L1 -808 5338 5350 2072 82 0 75 chr3 224528638 224528956 -2995622 - AluSc SINE Alu -15 294 1 839 249 65 19 chr3 224528956 224529103 -2995475 - L1ME4a LINE L1 -795 5351 5212 2272 104 0 0 chr3 224529221 224529530 -2995048 - AluSx SINE Alu -3 309 1 262 193 29 0 chr3 224529547 224529631 -2994947 + L1ME1 LINE L1 5936 6030 -148 233 262 81 0 chr3 224529751 224529900 -2994678 + (CTGGGG)n Simple_repeat Simple_repeat 2 162 0 409 196 58 112 chr3 224529904 224530128 -2994450 + L1MB8 LINE L1 5967 6178 0 2269 89 3 0 chr3 224530623 224530926 -2993652 - AluSx SINE Alu -8 304 1 905 85 31 0 chr3 224530926 224531055 -2993523 - AluSg SINE Alu -177 133 1 459 266 95 135 chr3 224531241 224531385 -2993193 + MLT1L LTR MaLR 1 149 -466 1409 143 54 48 chr3 224531385 224531679 -2992899 + AluJo SINE Alu 3 298 -14 2347 97 3 0 chr3 224531681 224531991 -2992587 + AluSp SINE Alu 1 311 -2 459 266 95 135 chr3 224531991 224532414 -2992164 + MLT1L LTR MaLR 150 548 -67 225 0 0 0 chr3 224532419 224532444 -2992134 + (ATTG)n Simple_repeat Simple_repeat 4 28 0 2072 77 4 0 chr3 224532444 224532718 -2991860 - AluSg SINE Alu -32 278 4 1221 257 101 23 chr3 224532814 224533297 -2991281 + LTR33 LTR ERVL 1 521 0 2126 118 0 0 chr3 224533642 224533955 -2990623 + AluSq SINE Alu 1 313 0 186 325 156 0 chr3 224533992 224534069 -2990509 - MIR SINE MIR -7 255 167 1710 155 34 3 chr3 224534099 224534396 -2990182 + AluJo SINE Alu 1 306 -6 2153 125 0 0 chr3 224534921 224535349 -2989229 + AluSx SINE Alu 1 428 0 824 134 0 22 chr3 224536383 224536517 -2988061 + AluJb SINE Alu 4 134 -178 2158 86 14 0 chr3 224536517 224536807 -2987771 + AluSx SINE Alu 1 294 -18 2618 20 3 0 chr3 224537191 224537492 -2987086 + AluY SINE Alu 1 302 -9 1671 106 4 0 chr3 224537620 224537866 -2986712 - L1MA3 LINE L1 0 6305 6059 1354 197 27 17 chr3 224537867 224538033 -2986545 - AluJb SINE Alu -14 298 126 2071 127 0 0 chr3 224538033 224538340 -2986238 - AluSx SINE Alu -5 307 1 1354 197 27 17 chr3 224538340 224538468 -2986110 - AluJb SINE Alu -186 126 1 2148 119 3 0 chr3 224538470 224538780 -2985798 - AluSq SINE Alu 0 313 3 216 0 0 0 chr3 224538783 224538807 -2985771 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 2060 88 3 14 chr3 224538810 224539095 -2985483 - AluSc SINE Alu -27 282 1 1116 204 37 4 chr3 224539315 224539560 -2985018 + LTR37B LTR ERV1 10 262 -206 1722 166 7 3 chr3 224539562 224539857 -2984721 - AluSx SINE Alu -16 296 1 225 267 67 33 chr3 224539966 224540056 -2984522 + MIR SINE MIR 52 144 -118 1196 90 154 15 chr3 224540354 224540555 -2984023 - MER30 DNA MER1_type 0 230 2 2298 70 3 7 chr3 224540796 224541096 -2983482 + AluSx SINE Alu 1 299 -13 302 310 100 6 chr3 224541727 224541889 -2982689 + MIR SINE MIR 35 219 -43 948 232 29 10 chr3 224542450 224542657 -2981921 + MIR SINE MIR 25 235 -27 25 0 0 0 chr3 224542712 224542737 -2981841 + AT_rich Low_complexity Low_complexity 1 25 0 2291 91 0 0 chr3 224542832 224543141 -2981437 - AluSp SINE Alu -4 309 1 451 316 43 14 chr3 224543166 224543375 -2981203 - L1MC4a LINE L1 -1878 5930 5716 2359 67 6 19 chr3 224544013 224544328 -2980250 + AluSp SINE Alu 1 311 -2 2241 41 0 0 chr3 224544414 224544681 -2979897 + AluY SINE Alu 32 298 -13 754 172 149 69 chr3 224544839 224544889 -2979689 + MER5A DNA MER1_type 1 46 -143 2167 114 0 9 chr3 224544889 224545204 -2979374 + AluSx SINE Alu 1 312 0 754 172 149 69 chr3 224545204 224545327 -2979251 + MER5A DNA MER1_type 46 188 -1 2237 89 0 0 chr3 224546017 224546310 -2978268 + AluSx SINE Alu 1 293 -19 1327 281 127 45 chr3 224546601 224546688 -2977890 - L3 LINE CR1 -126 1451 1373 2290 121 0 6 chr3 224546688 224547003 -2977575 - AluSq SINE Alu 0 313 1 1327 281 127 45 chr3 224547003 224547563 -2977015 - L3 LINE CR1 -204 1373 751 2297 99 10 0 chr3 224547572 224547876 -2976702 - AluSq SINE Alu -6 307 1 343 288 83 45 chr3 224547906 224548038 -2976540 - MIR SINE MIR -16 246 110 1279 60 0 0 chr3 224548438 224548587 -2975991 - AluY SINE Alu -162 149 1 372 329 42 14 chr3 224548736 224548879 -2975699 + L2 LINE L2 3166 3312 -1 682 106 0 0 chr3 224549006 224549100 -2975478 + AluS SINE Alu 1 94 -219 324 374 99 22 chr3 224549342 224549524 -2975054 - L2 LINE L2 0 3272 3077 1473 99 5 0 chr3 224549962 224550154 -2974424 - AluSx SINE Alu -119 193 1 772 172 149 69 chr3 224550844 224550967 -2973611 - MER5A DNA MER1_type -1 188 46 2322 114 0 9 chr3 224550967 224551282 -2973296 - AluSx SINE Alu 0 312 1 772 172 149 69 chr3 224551282 224551332 -2973246 - MER5A DNA MER1_type -143 46 1 2367 41 0 0 chr3 224551490 224551757 -2972821 - AluY SINE Alu -13 298 32 2513 67 6 19 chr3 224551843 224552158 -2972420 - AluSp SINE Alu -2 311 1 426 335 34 5 chr3 224552797 224553006 -2971572 + L1MC4a LINE L1 5716 5930 -1878 2440 91 0 0 chr3 224553031 224553340 -2971238 + AluSp SINE Alu 1 309 -4 25 0 0 0 chr3 224553435 224553460 -2971118 + AT_rich Low_complexity Low_complexity 1 25 0 947 232 29 10 chr3 224553515 224553722 -2970856 - MIR SINE MIR -27 235 25 299 310 100 6 chr3 224554283 224554445 -2970133 - MIR SINE MIR -43 219 35 2442 70 3 7 chr3 224555076 224555376 -2969202 - AluSx SINE Alu -13 299 1 1202 90 154 15 chr3 224555617 224555818 -2968760 + MER30 DNA MER1_type 2 230 0 228 267 67 33 chr3 224556116 224556206 -2968372 - MIR SINE MIR -118 144 52 2294 89 10 0 chr3 224556315 224556608 -2967970 + AluSx SINE Alu 1 296 -16 1797 65 9 9 chr3 224556775 224557006 -2967572 + AluSq SINE Alu 1 231 -82 8170 53 1 13 chr3 224557006 224558049 -2966529 + MER11C LTR ERVK 34 1063 -8 741 111 0 0 chr3 224558049 224558157 -2966421 + AluSg/x SINE Alu 203 310 0 2279 99 3 10 chr3 224558173 224558467 -2966111 + AluSp SINE Alu 1 292 -21 2407 86 20 0 chr3 224559132 224559433 -2965145 + AluSp SINE Alu 1 307 -6 577 240 118 23 chr3 224559648 224559869 -2964709 - L1ME3 LINE L1 -22 6140 5899 1116 61 0 0 chr3 224559870 224560001 -2964577 + AluSg1 SINE Alu 1 131 -178 871 253 62 0 chr3 224560011 224560284 -2964294 - L1ME3 LINE L1 -252 5910 5621 859 297 50 11 chr3 224560281 224560645 -2963933 - L1ME3 LINE L1 -1749 4397 4020 * 2322 91 10 0 chr3 224560790 224561086 -2963492 - AluSq SINE Alu -13 300 2 1298 302 42 20 chr3 224561119 224561483 -2963095 - L1ME3 LINE L1 -2168 3978 3623 1604 126 0 0 chr3 224561483 224561698 -2962880 - AluSg/x SINE Alu -7 303 89 1298 302 42 20 chr3 224561698 224562029 -2962549 - L1ME3 LINE L1 -2523 3623 3268 2271 194 112 4 chr3 224562032 224562577 -2962001 - L1MC2 LINE L1 -1 7982 6124 245 145 16 97 chr3 224562577 224562639 -2961939 - MLT1F1 LTR MaLR -442 125 69 292 176 255 0 chr3 224562657 224562759 -2961819 - L1MC3 LINE L1 -663 7122 6995 410 157 29 0 chr3 224563273 224563343 -2961235 + L2 LINE L2 3201 3272 0 21 0 0 0 chr3 224564036 224564057 -2960521 + AT_rich Low_complexity Low_complexity 1 21 0 604 269 48 6 chr3 224564098 224564265 -2960313 - MIR3 SINE MIR -3 205 32 2535 60 0 0 chr3 224564419 224564717 -2959861 + AluY SINE Alu 1 298 -13 2124 90 11 0 chr3 224565150 224565428 -2959150 + AluSq SINE Alu 1 281 -32 294 95 0 0 chr3 224565438 224565480 -2959098 + (CATATA)n Simple_repeat Simple_repeat 3 44 0 1080 144 0 6 chr3 224565480 224565647 -2958931 + AluJb SINE Alu 121 286 -26 4653 104 10 8 chr3 224565656 224566126 -2958452 + L1MA3 LINE L1 5594 6062 -243 2284 117 3 0 chr3 224566126 224566433 -2958145 + AluSq SINE Alu 4 311 -2 1494 204 26 16 chr3 224566438 224566566 -2958012 + AluJb SINE Alu 1 126 -186 2200 123 0 3 chr3 224566566 224566874 -2957704 + AluSx SINE Alu 1 307 -5 1494 204 26 16 chr3 224566874 224567053 -2957525 + AluJb SINE Alu 126 311 -1 4653 104 10 8 chr3 224567053 224567287 -2957291 + L1MA3 LINE L1 6065 6305 0 2663 51 0 6 chr3 224567414 224567726 -2956852 - AluY SINE Alu -1 310 1 2353 113 0 0 chr3 224568569 224568879 -2955699 - AluSx SINE Alu -2 310 1 2297 105 0 3 chr3 224569734 224570038 -2954540 - AluSc SINE Alu -6 303 1 1107 96 73 17 chr3 224570039 224570217 -2954361 + MER4E LTR ERV1 572 759 -7 677 123 9 9 chr3 224570237 224570343 -2954235 + AluSq/x SINE Alu 2 107 -206 1850 101 0 16 chr3 224570625 224570882 -2953696 - AluSx SINE Alu -16 296 44 2304 125 0 0 chr3 224571145 224571567 -2953011 - AluSx SINE Alu 0 422 1 1948 143 33 3 chr3 224572092 224572392 -2952186 - AluJo SINE Alu -3 309 1 184 325 156 0 chr3 224572422 224572499 -2952079 + MIR SINE MIR 167 255 -7 2279 118 0 0 chr3 224572536 224572849 -2951729 - AluSq SINE Alu 0 313 1 1086 259 101 23 chr3 224573195 224573678 -2950900 - LTR33 LTR ERVL 0 521 1 2369 83 3 0 chr3 224573774 224574074 -2950504 + AluSg SINE Alu 4 304 -6 2302 103 3 0 chr3 224574531 224574822 -2949756 - AluSq SINE Alu -20 293 2 2231 73 4 4 chr3 224575124 224575399 -2949179 + AluSq SINE Alu 3 277 -36 378 0 0 0 chr3 224575404 224575446 -2949132 + (TAAA)n Simple_repeat Simple_repeat 3 44 0 405 246 49 7 chr3 224575819 224575961 -2948617 + LTR67 LTR ERVL 409 556 -1 186 198 0 148 chr3 224576610 224576691 -2947887 - L2 LINE L2 -1776 1538 1470 2221 88 14 0 chr3 224576949 224577232 -2947346 - AluSx SINE Alu -4 308 22 22 0 0 0 chr3 224577557 224577579 -2946999 + AT_rich Low_complexity Low_complexity 1 22 0 2256 99 3 29 chr3 224579954 224580266 -2944312 + AluSx SINE Alu 1 304 -8 283 269 181 40 chr3 224580266 224580415 -2944163 - MIR3 SINE MIR -34 174 5 2421 91 0 13 chr3 224580571 224580879 -2943699 - AluSx SINE Alu -8 304 1 239 252 217 26 chr3 224581029 224581144 -2943434 + MIR SINE MIR 13 149 -113 329 333 136 9 chr3 224581440 224581668 -2942910 + MIR SINE MIR 6 262 0 1991 116 51 3 chr3 224581832 224582124 -2942454 - AluSx SINE Alu -6 306 1 2467 85 0 0 chr3 224582335 224582641 -2941937 - AluSx SINE Alu -6 306 1 711 196 146 50 chr3 224582986 224583205 -2941373 - MIR SINE MIR -21 241 2 182 256 23 0 chr3 224583326 224583369 -2941209 + L2 LINE L2 3262 3305 -8 2197 111 17 0 chr3 224583374 224583671 -2940907 - AluSg SINE Alu -8 302 1 2437 87 7 0 chr3 224584000 224584310 -2940268 - AluSx SINE Alu 0 312 1 1972 161 7 0 chr3 224584310 224584608 -2939970 - AluJb SINE Alu -11 301 1 204 292 0 0 chr3 224585408 224585456 -2939122 + L2 LINE L2 3225 3272 0 312 178 96 0 chr3 224586581 224586654 -2937924 - MER53 DNA DNA -87 102 23 * 338 95 111 0 chr3 224586592 224586655 -2937923 + MER53 DNA DNA 109 178 -11 385 318 99 21 chr3 224586998 224587240 -2937338 + MIR SINE MIR 2 262 0 577 236 49 48 chr3 224587611 224587766 -2936812 + LTR33A LTR ERVL 101 254 -269 2288 115 3 0 chr3 224587766 224588078 -2936500 - AluSq SINE Alu 0 313 1 577 236 49 48 chr3 224588078 224588270 -2936308 + LTR33A LTR ERVL 254 523 0 841 134 0 22 chr3 224588985 224589119 -2935459 + AluJb SINE Alu 4 134 -178 2296 86 14 0 chr3 224589119 224589409 -2935169 + AluSx SINE Alu 1 294 -18 2674 33 3 0 chr3 224589793 224590095 -2934483 + AluY SINE Alu 1 303 -8 765 285 108 60 chr3 224590447 224590772 -2933806 + L1MC4 LINE L1 7355 7663 -379 2439 95 3 0 chr3 224590772 224591078 -2933500 - AluSp SINE Alu -6 307 1 765 285 108 60 chr3 224591078 224591397 -2933181 + L1MC4 LINE L1 7663 8030 -12 1153 92 0 0 chr3 224591561 224591703 -2932875 + AluSq/x SINE Alu 1 142 -170 2253 128 3 0 chr3 224591704 224592010 -2932568 + AluSq SINE Alu 1 307 -6 840 283 42 32 chr3 224592240 224592650 -2931928 + L1ME4a LINE L1 5523 5936 -185 394 330 163 0 chr3 224594012 224594221 -2930357 - MIR SINE MIR -15 247 5 254 283 20 30 chr3 224594272 224594371 -2930207 + L2 LINE L2 2939 3036 -236 202 194 0 0 chr3 224594547 224594583 -2929995 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 926 205 36 0 chr3 224594583 224594749 -2929829 - FAM SINE Alu -6 43 1 1919 109 66 46 chr3 224594763 224595067 -2929511 - AluSg SINE Alu 0 310 1 1040 98 0 0 chr3 224595148 224595280 -2929298 - AluSg/x SINE Alu -14 296 165 1333 249 61 89 chr3 224596324 224596431 -2928147 + MLT1K LTR MaLR 12 120 -468 563 162 0 77 chr3 224596431 224596467 -2928111 - L1MB2 LINE L1 -4 6167 6130 2353 88 7 10 chr3 224596467 224596773 -2927805 - AluSq SINE Alu -8 305 1 563 162 0 77 chr3 224596773 224596853 -2927725 - L1MB2 LINE L1 -41 6130 6060 1333 249 61 89 chr3 224596853 224597320 -2927258 + MLT1K LTR MaLR 120 570 -18 1888 163 3 7 chr3 224598048 224598349 -2926229 + AluJo SINE Alu 1 300 -12 297 0 0 0 chr3 224598389 224598422 -2926156 + (TTTTG)n Simple_repeat Simple_repeat 2 34 0 295 277 64 0 chr3 224599055 224599149 -2925429 + L2 LINE L2 3184 3283 -30 366 266 129 14 chr3 224599301 224599440 -2925138 - MIR SINE MIR -98 164 10 33 43 0 0 chr3 224599906 224599953 -2924625 + GC_rich Low_complexity Low_complexity 1 47 0 216 219 0 0 chr3 224600451 224600492 -2924086 - MIR SINE MIR -33 229 189 1653 183 26 16 chr3 224600795 224601101 -2923477 + AluJo SINE Alu 1 309 -3 747 308 90 42 chr3 224601169 224601397 -2923181 + L2 LINE L2 2128 2344 -970 2209 95 21 0 chr3 224601397 224601682 -2922896 - AluSx SINE Alu -21 291 1 747 308 90 42 chr3 224601682 224602041 -2922537 + L2 LINE L2 2344 2743 -571 2155 122 30 3 chr3 224602264 224602568 -2922010 - AluJb SINE Alu 0 312 1 2498 70 0 3 chr3 224603445 224603743 -2920835 - AluSq SINE Alu -16 297 1 2233 131 0 3 chr3 224603848 224604160 -2920418 + AluSq SINE Alu 1 311 -2 308 276 69 17 chr3 224605854 224605970 -2918608 + L2 LINE L2 3129 3250 -22 2390 97 7 0 chr3 224606077 224606387 -2918191 - AluSq SINE Alu -1 312 1 1846 169 58 108 chr3 224608011 224608174 -2916404 + L1MB8 LINE L1 5272 5442 -742 2091 128 0 16 chr3 224608174 224608479 -2916099 + AluSq SINE Alu 1 300 -13 1846 169 58 108 chr3 224608479 224608872 -2915706 + L1MB8 LINE L1 5442 5800 -384 1907 139 33 3 chr3 224608872 224609239 -2915339 - AluJo SINE Alu 0 376 1 2025 174 16 3 chr3 224609239 224609618 -2914960 + L1MB8 LINE L1 5789 6172 -6 1937 91 4 4 chr3 224609634 224609875 -2914703 + AluSx SINE Alu 3 243 -69 2315 105 0 13 chr3 224610329 224610642 -2913936 + AluSc SINE Alu 1 309 0 2005 138 0 26 chr3 224610668 224610973 -2913605 + AluJb SINE Alu 1 297 -15 279 197 57 8 chr3 224611033 224611155 -2913423 + (TATAA)n Simple_repeat Simple_repeat 3 130 0 458 224 52 9 chr3 224611641 224611757 -2912821 + LTR67 LTR ERVL 434 554 -3 2353 92 10 0 chr3 224611758 224612063 -2912515 + AluSc SINE Alu 1 308 -1 2503 78 3 0 chr3 224612845 224613153 -2911425 - AluSg SINE Alu -1 309 1 512 159 189 15 chr3 224613313 224613445 -2911133 + MIR SINE MIR 108 262 0 428 239 34 17 chr3 224614307 224614424 -2910154 + MIR SINE MIR 21 139 -123 2141 134 16 0 chr3 224615560 224615867 -2908711 - AluSx SINE Alu 0 312 1 2406 79 0 0 chr3 224616268 224616560 -2908018 - AluSg SINE Alu -18 292 1 410 237 65 36 chr3 224616564 224616703 -2907875 - Charlie4 DNA MER1_type -1 1960 1818 25 65 0 0 chr3 224616862 224616908 -2907670 + AT_rich Low_complexity Low_complexity 1 46 0 1999 166 58 18 chr3 224617416 224617814 -2906764 - L1M3f LINE L1 -4912 416 3 1053 263 94 97 chr3 224617845 224617914 -2906664 - HAL1 LINE L1 -1302 1205 1137 2365 107 0 0 chr3 224617914 224618212 -2906366 - AluSx SINE Alu -9 303 6 1053 263 94 97 chr3 224618212 224619348 -2905230 - HAL1 LINE L1 -1370 1137 3 2490 56 7 3 chr3 224620119 224620423 -2904155 - AluY SINE Alu -6 305 1 22 35 0 0 chr3 224620471 224620500 -2904078 + AT_rich Low_complexity Low_complexity 1 29 0 2509 165 54 10 chr3 224620974 224621458 -2903120 + LTR22 LTR ERVK 1 505 -4 2136 124 6 43 chr3 224622004 224622301 -2902277 + MER1B DNA MER1_type 2 286 -2424 2244 88 30 7 chr3 224622301 224622596 -2901982 + AluSq SINE Alu 1 302 -11 2136 124 6 43 chr3 224622596 224622646 -2901932 + MER1B DNA MER1_type 286 336 -1 444 360 96 25 chr3 224622906 224623557 -2901021 + L2 LINE L2 2597 3260 -12 1787 120 0 47 chr3 224624463 224624780 -2899798 - AluY SINE Alu -8 303 2 1732 62 0 5 chr3 224624784 224624994 -2899584 - AluSg/x SINE Alu -13 299 91 2635 64 0 3 chr3 224625776 224626088 -2898490 - AluY SINE Alu 0 311 1 22 70 0 0 chr3 224626366 224626409 -2898169 + AT_rich Low_complexity Low_complexity 1 43 0 2029 136 30 0 chr3 224626509 224626811 -2897767 - AluSx SINE Alu -1 311 1 1985 135 10 16 chr3 224627388 224627714 -2896864 + AluSx SINE Alu 1 312 0 2459 89 0 0 chr3 224628521 224628823 -2895755 + AluSg SINE Alu 1 302 -8 2283 108 0 0 chr3 224629167 224629463 -2895115 + AluSx SINE Alu 1 296 -16 503 133 13 0 chr3 224629850 224629925 -2894653 - AluS SINE Alu -236 77 2 695 229 11 0 chr3 224629957 224630132 -2894446 - L1M4 LINE L1 -3442 2704 2528 2095 92 4 0 chr3 224630136 224630398 -2894180 + AluSg SINE Alu 28 290 -20 191 138 0 0 chr3 224630519 224630548 -2894030 - MIR SINE MIR -57 151 123 23 78 0 0 chr3 224633714 224633765 -2890813 + GC_rich Low_complexity Low_complexity 1 51 0 204 40 0 0 chr3 224633927 224633952 -2890626 + (GGGGA)n Simple_repeat Simple_repeat 1 25 0 299 239 130 101 chr3 224634559 224634634 -2889944 - L2 LINE L2 -1 3312 3230 2170 100 27 7 chr3 224634634 224634935 -2889643 + AluSx SINE Alu 4 310 -2 299 239 130 101 chr3 224634935 224634997 -2889581 - L2 LINE L2 -83 3230 3171 381 343 117 24 chr3 224635175 224635423 -2889155 - L2 LINE L2 -420 2894 2624 2053 252 95 65 chr3 224635516 224636396 -2888182 + L1MEd LINE L1 17 869 -1621 2404 93 0 3 chr3 224636396 224636707 -2887871 + AluSq SINE Alu 1 310 -3 2053 252 95 65 chr3 224636707 224637242 -2887336 + L1MEd LINE L1 869 1570 -920 2223 128 0 3 chr3 224637242 224637547 -2887031 + AluSx SINE Alu 1 304 -8 2053 252 95 65 chr3 224637547 224637610 -2886968 + L1MEd LINE L1 1570 1630 -860 1741 67 0 18 chr3 224637663 224637888 -2886690 - AluSg/x SINE Alu -1 309 89 2635 64 0 3 chr3 224638670 224638982 -2885596 - AluY SINE Alu 0 311 1 22 70 0 0 chr3 224639260 224639303 -2885275 + AT_rich Low_complexity Low_complexity 1 43 0 2029 136 30 0 chr3 224639403 224639705 -2884873 - AluSx SINE Alu -1 311 1 1985 135 10 16 chr3 224640282 224640608 -2883970 + AluSx SINE Alu 1 312 0 2539 84 0 0 chr3 224641415 224641723 -2882855 + AluSg SINE Alu 1 308 -2 428 35 17 0 chr3 224641737 224641795 -2882783 + (TA)n Simple_repeat Simple_repeat 2 60 0 2207 96 3 0 chr3 224641869 224642173 -2882405 + AluSx SINE Alu 1 305 0 2283 108 0 0 chr3 224642517 224642813 -2881765 + AluSx SINE Alu 1 296 -16 2155 108 3 20 chr3 224643363 224643660 -2880918 + AluSx SINE Alu 1 292 -20 191 138 0 0 chr3 224643781 224643810 -2880768 - MIR SINE MIR -57 151 123 283 330 93 9 chr3 224645329 224645358 -2879220 + HAL1 LINE L1 2275 2300 -207 2064 99 49 0 chr3 224645358 224645642 -2878936 + AluSx SINE Alu 1 298 -14 283 330 93 9 chr3 224645642 224645827 -2878751 + HAL1 LINE L1 2300 2507 0 220 244 0 0 chr3 224646000 224646045 -2878533 + A-rich Low_complexity Low_complexity 1 45 0 1637 174 10 26 chr3 224646102 224646412 -2878166 - AluJo SINE Alu -4 308 4 2038 121 18 3 chr3 224646420 224646702 -2877876 - AluSq SINE Alu -25 288 3 234 227 169 39 chr3 224646740 224646947 -2877631 + L1ME4a LINE L1 5745 5978 -143 324 374 99 22 chr3 224647488 224647670 -2876908 - L2 LINE L2 0 3272 3077 661 152 9 0 chr3 224648006 224648111 -2876467 + U6 snRNA snRNA 1 106 -1 362 271 10 0 chr3 224648492 224648588 -2875990 + MIR SINE MIR 51 147 -115 2532 67 7 0 chr3 224649641 224649941 -2874637 + AluSq SINE Alu 2 303 -10 2146 128 0 0 chr3 224650904 224651200 -2873378 - AluJb SINE Alu -16 296 1 209 0 97 0 chr3 224651212 224651243 -2873335 + T-rich Low_complexity Low_complexity 4 37 0 2235 93 0 14 chr3 224651249 224651539 -2873039 - AluSc SINE Alu -23 286 1 1946 91 4 4 chr3 224651997 224652240 -2872338 - AluSx SINE Alu -69 243 1 770 190 49 0 chr3 224652240 224652403 -2872175 - L1M4 LINE L1 -732 5442 5272 2398 91 7 0 chr3 224654021 224654330 -2870248 + AluSq SINE Alu 1 311 -2 253 233 103 52 chr3 224654437 224654553 -2870025 - L2 LINE L2 -22 3250 3129 1435 148 9 5 chr3 224656216 224656439 -2868139 - AluSc SINE Alu -2 307 84 1038 123 0 0 chr3 224656577 224656715 -2867863 - AluSg1 SINE Alu -171 138 1 402 200 80 40 chr3 224656781 224656906 -2867672 - L1ME3A LINE L1 -5 6165 6036 2329 88 7 0 chr3 224657099 224657394 -2867184 - AluSx SINE Alu -14 298 2 529 258 127 20 chr3 224657661 224657913 -2866665 + L1MC5 LINE L1 7249 7527 -434 334 278 45 30 chr3 224658099 224658232 -2866346 - L1ME3A LINE L1 0 6170 6036 332 323 15 8 chr3 224659164 224659297 -2865281 + (CATATA)n Simple_repeat Simple_repeat 6 139 0 445 327 135 31 chr3 224659471 224659856 -2864722 - L3 LINE CR1 -4 1573 1149 918 182 0 0 chr3 224659969 224660117 -2864461 - FRAM SINE Alu -19 157 10 1214 174 0 5 chr3 224660143 224660333 -2864245 - AluJb SINE Alu -18 294 106 3270 254 28 15 chr3 224660333 224661218 -2863360 - L1MEc LINE L1 -5485 911 15 224 277 0 31 chr3 224661335 224661400 -2863178 - L3 LINE CR1 -1183 394 332 2198 86 23 20 chr3 224662140 224662441 -2862137 + AluSx SINE Alu 10 311 -1 24 0 0 0 chr3 224662805 224662829 -2861749 + AT_rich Low_complexity Low_complexity 1 24 0 224 287 164 8 chr3 224662832 224662954 -2861624 + MER5A DNA MER1_type 43 183 -6 461 273 126 38 chr3 224662989 224663091 -2861487 + MIR SINE MIR 20 112 -150 2140 132 3 0 chr3 224663091 224663386 -2861192 - AluSx SINE Alu -16 296 1 461 273 126 38 chr3 224663386 224663466 -2861112 + MIR SINE MIR 112 218 -44 619 222 120 0 chr3 224664218 224664385 -2860193 + L1MB3 LINE L1 4762 4948 -1198 1836 185 3 0 chr3 224664394 224664697 -2859881 + AluSx SINE Alu 1 304 -8 1721 156 3 42 chr3 224664699 224665006 -2859572 + AluJb SINE Alu 1 295 -17 2878 200 97 111 chr3 224665007 224665771 -2858807 + L1MEc LINE L1 992 1765 -4450 3186 177 56 17 chr3 224665771 224666368 -2858210 + L1MB3 LINE L1 5511 6136 -47 1963 104 43 0 chr3 224666368 224666648 -2857930 + AluSg SINE Alu 1 292 -18 3186 177 56 17 chr3 224666648 224666695 -2857883 + L1MB3 LINE L1 6136 6180 -3 2878 200 97 111 chr3 224666695 224666992 -2857586 + L1MEc LINE L1 1765 2065 -4150 1005 41 0 0 chr3 224666992 224667113 -2857465 + L1PA4 LINE L1 6032 6152 -3 2878 200 97 111 chr3 224667113 224667628 -2856950 + L1MEc LINE L1 2065 2544 -3671 1145 254 99 20 chr3 224667622 224668117 -2856461 + L1MEc LINE L1 3602 4135 -2080 * 2119 94 3 20 chr3 224668119 224668416 -2856162 - AluSg SINE Alu -17 293 2 25 0 0 0 chr3 224668416 224668441 -2856137 + AT_rich Low_complexity Low_complexity 1 25 0 346 247 32 0 chr3 224668553 224668646 -2855932 - MARNA DNA Mariner -202 384 289 270 340 110 11 chr3 224668663 224668854 -2855724 + MIR SINE MIR 2 211 -51 737 169 7 37 chr3 224668878 224669014 -2855564 - MER2 DNA MER2_type -213 132 1 2167 126 3 7 chr3 224669125 224669426 -2855152 - AluSg SINE Alu -10 300 1 29 0 0 0 chr3 224669629 224669658 -2854920 + AT_rich Low_complexity Low_complexity 1 29 0 535 204 9 9 chr3 224669760 224669873 -2854705 + MIR SINE MIR 2 114 -148 700 176 0 0 chr3 224670314 224670433 -2854145 + FRAM SINE Alu 47 165 -11 800 158 168 37 chr3 224670568 224670758 -2853820 + AluJo SINE Alu 84 298 -14 236 192 173 0 chr3 224671168 224671220 -2853358 + U7 snRNA snRNA 2 62 -1 2245 114 0 0 chr3 224671321 224671649 -2852929 - AluSc SINE Alu 0 309 1 469 153 0 0 chr3 224671687 224671759 -2852819 + AluS SINE Alu 3 74 -237 1980 139 7 0 chr3 224672537 224672824 -2851754 - AluSx SINE Alu -23 289 1 830 113 152 0 chr3 224672824 224672975 -2851603 - MER46B DNA MER2_type -186 50 2 1645 182 17 23 chr3 224672980 224673331 -2851247 + L1MB3 LINE L1 5835 6183 0 21 36 0 0 chr3 224673419 224673447 -2851131 + AT_rich Low_complexity Low_complexity 1 28 0 1147 160 13 58 chr3 224673839 224673901 -2850677 + AluJo SINE Alu 84 147 -165 2329 95 0 10 chr3 224673901 224674207 -2850371 + AluSq SINE Alu 1 303 -10 1147 160 13 58 chr3 224674207 224674369 -2850209 + AluJo SINE Alu 147 298 -14 1558 151 16 8 chr3 224674369 224674627 -2849951 + L1MC1 LINE L1 5435 5694 -650 * 3862 179 85 9 chr3 224674626 224675418 -2849160 + L1MB3 LINE L1 5330 6181 -2 3093 151 83 26 chr3 224675405 224676029 -2848549 + L1MC1 LINE L1 5673 6332 -1 * 227 268 105 20 chr3 224676522 224676675 -2847903 + L1M4 LINE L1 2647 2812 -3334 494 116 0 0 chr3 224676866 224676935 -2847643 + U4 snRNA snRNA 1 69 -76 455 285 150 30 chr3 224677011 224677344 -2847234 + L1M4 LINE L1 3112 3484 -2662 2333 85 7 7 chr3 224677361 224677666 -2846912 - AluSp SINE Alu -8 305 1 931 87 48 0 chr3 224678073 224678199 -2846379 + AluY SINE Alu 1 132 -179 2091 139 3 3 chr3 224678358 224678668 -2845910 - AluSx SINE Alu -2 310 1 2007 120 7 27 chr3 224678776 224679077 -2845501 + AluSx SINE Alu 1 295 -17 766 149 9 0 chr3 224679649 224679763 -2844815 - FRAM SINE Alu -24 152 38 535 183 63 32 chr3 224679967 224680093 -2844485 - FLAM_A SINE Alu 0 133 4 1591 116 25 113 chr3 224680286 224680627 -2843951 - AluYb8 SINE Alu 0 313 1 435 273 93 19 chr3 224680726 224680887 -2843691 - MIR SINE MIR -55 207 35 2501 35 3 26 chr3 224681248 224681558 -2843020 - AluY SINE Alu -7 304 2 21 0 0 0 chr3 224681624 224681645 -2842933 + AT_rich Low_complexity Low_complexity 1 21 0 2198 67 56 0 chr3 224681813 224682098 -2842480 + AluSp SINE Alu 7 307 -6 23 78 0 0 chr3 224683913 224683964 -2840614 + GC_rich Low_complexity Low_complexity 1 51 0 204 40 0 0 chr3 224684126 224684151 -2840427 + (GGGGA)n Simple_repeat Simple_repeat 1 25 0 290 294 42 67 chr3 224684758 224684833 -2839745 - L2 LINE L2 -1 3271 3199 2166 96 27 7 chr3 224684833 224685134 -2839444 + AluSx SINE Alu 4 310 -2 290 294 42 67 chr3 224685134 224685177 -2839401 - L2 LINE L2 -73 3199 3156 301 243 0 0 chr3 224685231 224685301 -2839277 - L2 LINE L2 -240 3073 3004 313 343 117 24 chr3 224685374 224685622 -2838956 - L2 LINE L2 -420 2894 2624 2261 249 95 66 chr3 224685715 224686595 -2837983 + L1MEd LINE L1 17 1006 -5304 2332 93 3 3 chr3 224686595 224686905 -2837673 + AluSq SINE Alu 1 310 -3 2261 249 95 66 chr3 224686905 224687416 -2837162 + L1MEd LINE L1 1006 1501 -4809 2141 141 3 0 chr3 224687440 224687746 -2836832 + AluSq SINE Alu 1 307 -6 905 281 42 32 chr3 224687976 224688386 -2836192 + L1ME4a LINE L1 5523 5936 -185 318 320 169 0 chr3 224689748 224689920 -2834658 - MIR SINE MIR -15 247 47 212 283 20 30 chr3 224690008 224690107 -2834471 + L2 LINE L2 2939 3036 -236 202 194 0 0 chr3 224690283 224690319 -2834259 + (TCCA)n Simple_repeat Simple_repeat 3 38 0 898 205 36 0 chr3 224690319 224690485 -2834093 - FAM SINE Alu -6 43 1 1871 112 66 46 chr3 224690496 224690800 -2833778 - AluSg SINE Alu 0 310 1 1030 98 0 0 chr3 224690881 224691013 -2833565 - AluSg/x SINE Alu -14 298 167 485 144 0 126 chr3 224692165 224692206 -2832372 - L1MB2 LINE L1 -4 6167 6122 2307 84 7 10 chr3 224692206 224692504 -2832074 - AluSq SINE Alu -16 297 1 485 144 0 126 chr3 224692504 224692573 -2832005 - L1MB2 LINE L1 -49 6122 6071 1408 266 71 42 chr3 224692573 224693051 -2831527 + MLT1K LTR MaLR 79 570 -18 1882 159 3 7 chr3 224693779 224694080 -2830498 + AluJo SINE Alu 1 300 -12 252 0 0 0 chr3 224694120 224694148 -2830430 + (TTTTG)n Simple_repeat Simple_repeat 2 29 0 1954 133 11 4 chr3 224695346 224695625 -2828953 + AluSx SINE Alu 1 281 -31 207 88 0 0 chr3 224695629 224695663 -2828915 + (CAATA)n Simple_repeat Simple_repeat 2 35 0 865 172 0 53 chr3 224695719 224695888 -2828690 - FAM SINE Alu -16 169 10 1539 155 22 128 chr3 224695898 224696010 -2828568 + L1MB4 LINE L1 5817 5939 -241 1641 201 0 3 chr3 224696010 224696293 -2828285 - AluJo SINE Alu -30 282 1 1539 155 22 128 chr3 224696293 224696422 -2828156 + L1MB4 LINE L1 5939 6000 -180 2310 86 0 23 chr3 224696422 224696726 -2827852 - AluY SINE Alu -14 297 1 1539 155 22 128 chr3 224696726 224696890 -2827688 + L1MB4 LINE L1 6000 6180 0 1283 176 41 24 chr3 224696919 224697214 -2827364 - AluJb SINE Alu -8 304 5 393 86 143 0 chr3 224697534 224697604 -2826974 + MADE1 DNA Mariner 1 80 0 2417 65 0 3 chr3 224698043 224698334 -2826244 - AluSc SINE Alu -10 299 10 410 164 14 0 chr3 224699532 224699605 -2824973 - AluJ/FLAM SINE Alu -237 75 2 319 227 284 52 chr3 224699768 224699962 -2824616 - L1MC4 LINE L1 -12 8030 7792 2154 101 7 0 chr3 224700087 224700385 -2824193 + AluSp SINE Alu 1 300 -13 604 221 126 36 chr3 224700606 224700828 -2823750 - L1ME3 LINE L1 -22 6140 5899 1026 69 0 0 chr3 224700829 224700960 -2823618 + AluSg1 SINE Alu 1 131 -178 923 253 62 0 chr3 224700970 224701243 -2823335 - L1ME3 LINE L1 -252 5910 5621 902 294 50 11 chr3 224701240 224701604 -2822974 - L1ME3 LINE L1 -1749 4397 4020 * 571 88 12 0 chr3 224701821 224701901 -2822677 + AluSp/q SINE Alu 213 293 -20 1981 102 3 44 chr3 224702359 224702674 -2821904 - AluSx SINE Alu -10 302 1 563 153 9 36 chr3 224703483 224703594 -2820984 + AluSg/x SINE Alu 188 295 -15 230 330 38 9 chr3 224703599 224703705 -2820873 - L2 LINE L2 -610 2704 2596 2544 45 0 7 chr3 224703932 224704241 -2820337 - AluY SINE Alu -4 307 1 2187 83 13 3 chr3 224704241 224704541 -2820037 - AluSp SINE Alu -10 303 1 509 280 67 13 chr3 224704543 224704768 -2819810 - L1ME LINE L1 -578 5584 5348 2048 113 14 0 chr3 224704991 224705284 -2819294 - AluSg SINE Alu -13 297 1 27 0 0 0 chr3 224705287 224705314 -2819264 + AT_rich Low_complexity Low_complexity 1 27 0 596 77 11 44 chr3 224705453 224705544 -2819034 + AluSp/q SINE Alu 213 300 -13 453 233 87 13 chr3 224705550 224705700 -2818878 - L1MC/D LINE L1 -2066 5742 5582 752 262 234 30 chr3 224705719 224706120 -2818458 - L2 LINE L2 -1 3312 2830 711 231 69 25 chr3 224706146 224706339 -2818239 - L1MC/D LINE L1 -2240 5568 5364 1817 99 22 76 chr3 224706339 224706653 -2817925 - AluSx SINE Alu -15 297 1 205 196 71 0 chr3 224706856 224706912 -2817666 + C-rich Low_complexity Low_complexity 2 61 0 353 303 21 21 chr3 224707103 224707245 -2817333 + C-rich Low_complexity Low_complexity 2 143 0 2136 232 12 9 chr3 224707498 224708071 -2816507 + L1 LINE L1 4752 5326 -820 350 316 153 46 chr3 224708091 224708417 -2816161 - L1ME1 LINE L1 -237 5929 5569 22 35 0 0 chr3 224708707 224708736 -2815842 + AT_rich Low_complexity Low_complexity 1 29 0 360 188 82 12 chr3 224708902 224708987 -2815591 - MLT1H LTR MaLR -29 566 476 * 508 250 68 40 chr3 224708983 224709257 -2815321 - MLT1H LTR MaLR -186 356 80 1582 183 13 136 chr3 224709258 224709311 -2815267 - MLT1C LTR MaLR -2 465 407 2131 85 17 0 chr3 224709311 224709604 -2814974 - AluSx SINE Alu -14 298 1 1582 183 13 136 chr3 224709604 224710080 -2814498 - MLT1C LTR MaLR -60 407 1 231 322 0 0 chr3 224710082 224710141 -2814437 - MLT1H LTR MaLR -496 59 1 852 242 201 4 chr3 224710148 224710417 -2814161 - LTR16C LTR ERVL -72 419 98 1410 175 11 18 chr3 224710633 224710919 -2813659 + AluJb SINE Alu 15 298 -14 1921 130 0 3 chr3 224710991 224711275 -2813303 - AluSx SINE Alu -29 283 1 4647 225 48 6 chr3 224711812 224712831 -2811747 + L1M1 LINE L1 582 1643 -5922 1806 144 3 0 chr3 224713688 224713980 -2810598 - L1PA8 LINE L1 -1 6171 5879 10355 66 7 2 chr3 224714096 224715483 -2809095 + L1P LINE L1 1024 2417 -3729 2790 96 27 18 chr3 224715602 224716042 -2808536 - L1MA3 LINE L1 -256 6049 5606 1031 160 0 5 chr3 224716042 224716230 -2808348 - AluJb SINE Alu -5 307 121 294 95 0 0 chr3 224716230 224716272 -2808306 + (TATATG)n Simple_repeat Simple_repeat 3 44 0 2044 100 4 0 chr3 224716282 224716562 -2808016 - AluSq SINE Alu -32 281 1 520 157 12 0 chr3 224716820 224716903 -2807675 - AluSg1 SINE Alu -224 85 2 355 233 86 9 chr3 224716969 224717085 -2807493 - L1ME3A LINE L1 -5 6165 6041 2177 92 7 0 chr3 224717288 224717583 -2806995 - AluSx SINE Alu -14 298 2 2355 56 3 10 chr3 224718095 224718399 -2806179 - AluY SINE Alu -9 302 1 286 254 9 45 chr3 224718967 224719077 -2805501 + C-rich Low_complexity Low_complexity 4 109 0 365 123 35 0 chr3 224719366 224719423 -2805155 + AluJo/FLAM SINE Alu 60 118 -184 2122 88 3 10 chr3 224719423 224719717 -2804861 - AluSc SINE Alu -17 292 1 2024 102 3 3 chr3 224719981 224720286 -2804292 - AluSx SINE Alu 0 305 1 873 135 15 0 chr3 224720695 224720828 -2803750 + AluSq/x SINE Alu 1 135 -177 2381 80 0 0 chr3 224720828 224721140 -2803438 + AluSx SINE Alu 1 312 0 250 289 0 0 chr3 224721140 224721192 -2803386 + polypurine Low_complexity Low_complexity 2 53 0 181 309 246 10 chr3 224722025 224722232 -2802346 - L3 LINE CR1 -15 1562 1307 406 223 94 98 chr3 224722546 224722601 -2801977 - L1MC4 LINE L1 -176 7866 7812 2225 116 0 0 chr3 224722601 224722912 -2801666 + AluSx SINE Alu 1 311 -1 406 223 94 98 chr3 224722912 224723112 -2801466 - L1MC4 LINE L1 -230 7812 7612 373 86 17 0 chr3 224724287 224724345 -2800233 + Alu SINE Alu 1 59 -244 312 317 92 8 chr3 224724481 224724601 -2799977 + L1MC4a LINE L1 6043 6172 -1636 694 164 0 0 chr3 224724602 224724706 -2799872 + AluJb SINE Alu 2 105 -207 1576 215 44 26 chr3 224724706 224725204 -2799374 + LTR28 LTR ERV1 4 1231 -137 209 294 163 11 chr3 224725356 224725448 -2799130 - L2 LINE L2 -3 3269 3164 367 118 0 0 chr3 224726182 224726233 -2798345 + FLAM SINE Alu 64 114 -19 234 0 0 0 chr3 224726233 224726259 -2798319 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 2232 60 0 7 chr3 224726263 224726545 -2798033 - AluSg SINE Alu -30 280 1 777 284 22 31 chr3 224726546 224726768 -2797810 - MLT1L LTR MaLR -353 262 43 195 129 0 0 chr3 224727463 224727494 -2797084 + (TC)n Simple_repeat Simple_repeat 2 32 0 1458 163 42 0 chr3 224727609 224727873 -2796705 - AluJb SINE Alu -37 275 1 2002 143 0 0 chr3 224727883 224728184 -2796394 - AluSx SINE Alu -11 301 1 405 271 69 79 chr3 224728252 224728450 -2796128 + L1MC4 LINE L1 7612 7808 -234 1989 147 0 0 chr3 224728450 224728762 -2795816 - AluSx SINE Alu 0 312 1 405 271 69 79 chr3 224728762 224728854 -2795724 + L1MC4 LINE L1 7808 7899 -143 194 269 142 30 chr3 224729194 224729295 -2795283 + L2 LINE L2 2262 2383 -931 2200 86 0 0 chr3 224729295 224729586 -2794992 - AluSx SINE Alu -21 291 1 194 269 142 30 chr3 224729586 224729618 -2794960 + L2 LINE L2 2383 2410 -904 868 172 47 6 chr3 224731349 224731518 -2793060 + AluSg/x SINE Alu 137 312 0 21 0 0 0 chr3 224731518 224731539 -2793039 + AT_rich Low_complexity Low_complexity 1 21 0 2276 101 0 0 chr3 224731932 224732239 -2792339 - AluSx SINE Alu -5 307 1 351 0 0 0 chr3 224732254 224732293 -2792285 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1716 137 42 92 chr3 224732398 224732457 -2792121 - L1PB4 LINE L1 -4 6152 6092 2110 121 0 6 chr3 224732457 224732771 -2791807 - AluSx SINE Alu 0 312 1 1716 137 42 92 chr3 224732771 224732815 -2791763 - L1PB4 LINE L1 -64 6092 5736 890 237 62 65 chr3 224732815 224733045 -2791533 - L1PA10 LINE L1 -100 6068 5838 2104 117 0 0 chr3 224733045 224733343 -2791235 - AluSx SINE Alu -14 298 1 890 237 62 65 chr3 224733343 224733449 -2791129 - L1PA10 LINE L1 -330 5838 5733 257 311 25 33 chr3 224733438 224733560 -2791018 - L1MC4 LINE L1 -547 7495 7375 * 2164 92 0 55 chr3 224733712 224734039 -2790539 - AluSp SINE Alu -4 309 1 1042 183 44 6 chr3 224734110 224734380 -2790198 - MLT2D LTR ERVL -40 424 50 272 224 0 17 chr3 224734428 224734486 -2790092 - MLT2D LTR ERVL -357 57 1 483 266 47 0 chr3 224734506 224734634 -2789944 + MIR3 SINE MIR 60 193 -15 2136 98 7 3 chr3 224734650 224734946 -2789632 + AluSq SINE Alu 1 297 -16 2121 92 0 3 chr3 224735098 224735391 -2789187 + AluSx SINE Alu 1 292 -20 239 0 32 0 chr3 224735391 224735422 -2789156 + (CAAT)n Simple_repeat Simple_repeat 2 33 0 219 318 9 36 chr3 224735831 224735941 -2788637 + L2 LINE L2 2374 2480 -834 419 51 0 17 chr3 224736172 224736231 -2788347 + (TCC)n Simple_repeat Simple_repeat 1 58 0 821 188 6 6 chr3 224736231 224736391 -2788187 - AluJo SINE Alu -32 280 121 1585 161 52 10 chr3 224736396 224736687 -2787891 - AluJb SINE Alu 0 312 10 2423 69 0 0 chr3 224736823 224737127 -2787451 - AluSg SINE Alu -6 304 1 615 129 59 20 chr3 224737717 224737813 -2786765 - AluJo SINE Alu -91 221 121 2256 98 0 0 chr3 224737813 224738109 -2786469 - AluSq SINE Alu -17 296 1 2414 182 26 30 chr3 224738433 224738824 -2785754 + MLT1C LTR MaLR 1 391 -76 2287 83 0 0 chr3 224738824 224739125 -2785453 - AluSx SINE Alu -10 302 2 2414 182 26 30 chr3 224739125 224739195 -2785383 + MLT1C LTR MaLR 391 460 -7 771 261 42 42 chr3 224739362 224739622 -2784956 + MIR SINE MIR 3 262 0 2189 98 3 0 chr3 224741065 224741362 -2783216 - AluSp SINE Alu -13 300 3 297 286 185 22 chr3 224741584 224741811 -2782767 - LTR33 LTR ERVL -21 500 237 274 231 0 0 chr3 224741929 224741994 -2782584 - LTR33 LTR ERVL -453 68 4 1996 110 0 28 chr3 224742038 224742356 -2782222 - AluSx SINE Alu -3 309 1 1231 285 107 5 chr3 224742745 224743156 -2781422 - MLT1K LTR MaLR 0 588 136 3423 18 0 15 chr3 224743437 224743849 -2780729 + SVA Other Other 996 1386 0 207 272 86 0 chr3 224744084 224744165 -2780413 + MIR3 SINE MIR 116 203 -5 1212 184 13 1 chr3 224744297 224744625 -2779953 + L1M3 LINE L1 5155 5484 -687 2310 87 0 0 chr3 224744630 224744962 -2779616 + AluSc SINE Alu 1 332 0 885 238 0 0 chr3 224744973 224745162 -2779416 + L1M3 LINE L1 5479 5667 -516 2092 88 0 0 chr3 224745313 224745585 -2778993 + AluSg SINE Alu 27 298 -12 719 130 214 0 chr3 224745585 224745716 -2778862 + AluSc SINE Alu 132 290 -19 23 33 0 0 chr3 224745766 224745796 -2778782 + AT_rich Low_complexity Low_complexity 1 30 0 777 208 0 0 chr3 224745831 224745961 -2778617 + FLAM_A SINE Alu 1 130 -3 638 251 22 28 chr3 224746654 224746833 -2777745 + MER5B DNA MER1_type 1 178 0 25 0 0 0 chr3 224748731 224748756 -2775822 + AT_rich Low_complexity Low_complexity 1 25 0 1059 87 33 0 chr3 224749654 224749804 -2774774 - L1PB1 LINE L1 -32 6119 5965 2363 89 0 3 chr3 224749804 224750107 -2774471 - AluSc SINE Alu -7 302 1 1473 252 75 23 chr3 224750107 224750990 -2773588 - L1M4 LINE L1 -930 5216 4380 647 81 0 0 chr3 224750990 224751077 -2773501 + (CCCG)n Simple_repeat Simple_repeat 3 89 0 1473 252 75 23 chr3 224751077 224751090 -2773488 - L1M4 LINE L1 -1766 4380 4369 1966 124 4 0 chr3 224751090 224751363 -2773215 - AluSx SINE Alu -38 274 1 1473 252 75 23 chr3 224751363 224751493 -2773085 - L1M4 LINE L1 -1777 4369 4106 469 109 0 0 chr3 224751517 224751581 -2772997 - AluS SINE Alu -228 84 21 3383 164 17 87 chr3 224751638 224752195 -2772383 + L1MA9 LINE L1 2876 3471 -2841 875 167 0 0 chr3 224752195 224752327 -2772251 + FLAM_C SINE Alu 2 133 0 3383 164 17 87 chr3 224752327 224752786 -2771792 + L1MA9 LINE L1 3471 3961 -2351 5238 172 24 35 chr3 224752786 224753869 -2770709 - MER11C LTR ERVK 0 1071 1 3383 164 17 87 chr3 224753869 224753895 -2770683 + L1MA9 LINE L1 3961 6171 -141 543 193 123 0 chr3 224753898 224754012 -2770566 + FLAM_A SINE Alu 1 128 -5 586 139 52 0 chr3 224754065 224754180 -2770398 + L1MA8 LINE L1 6171 6291 0 1736 189 3 0 chr3 224754184 224754481 -2770097 + AluJo SINE Alu 1 298 -14 396 250 83 21 chr3 224754492 224754636 -2769942 + L1M4 LINE L1 3202 3354 -2792 2204 102 0 7 chr3 224754637 224754932 -2769646 + AluSg SINE Alu 1 293 -17 2014 132 78 25 chr3 224754941 224755298 -2769280 - L1MD1 LINE L1 -414 5828 5453 2140 112 3 19 chr3 224755475 224755789 -2768789 - AluSx SINE Alu -3 309 1 202 184 0 0 chr3 224755811 224755849 -2768729 - MER5B DNA MER1_type -140 38 1 1389 109 0 0 chr3 224756021 224756213 -2768365 - AluSx SINE Alu -15 297 106 872 128 0 0 chr3 224756526 224756643 -2767935 - AluSx SINE Alu -195 117 1 2275 107 7 0 chr3 224757003 224757311 -2767267 + AluSx SINE Alu 1 310 -2 4578 128 53 65 chr3 224757599 224758992 -2765586 - pTR5 LTR ERV1 0 2438 743 253 298 160 6 chr3 224759082 224759263 -2765315 - MIR SINE MIR -22 240 32 638 162 110 19 chr3 224759566 224759720 -2764858 - MER53 DNA DNA 0 189 22 3648 181 33 35 chr3 224759726 224759862 -2764716 - L1MB3 LINE L1 -1 6182 6047 743 149 8 15 chr3 224759862 224759996 -2764582 - FLAM_C SINE Alu 0 133 1 3648 181 33 35 chr3 224759996 224760642 -2763936 - L1MB3 LINE L1 -136 6047 5401 227 318 50 85 chr3 224761144 224761345 -2763233 - L2 LINE L2 -82 3190 2997 2023 113 25 0 chr3 224761394 224761691 -2762887 - AluSx SINE Alu 0 304 1 2342 106 0 0 chr3 224761744 224762045 -2762533 - AluSg SINE Alu -9 301 1 209 203 43 0 chr3 224762229 224762298 -2762280 + (TTTAA)n Simple_repeat Simple_repeat 4 75 0 1987 155 0 0 chr3 224762805 224763102 -2761476 - AluJb SINE Alu -7 305 9 429 214 0 0 chr3 224763342 224763431 -2761147 + FLAM_A SINE Alu 22 110 -32 2233 113 3 3 chr3 224763436 224763747 -2760831 - AluSx SINE Alu -1 311 1 2289 87 0 3 chr3 224765187 224765487 -2759091 - AluSx SINE Alu -13 299 1 264 77 0 0 chr3 224765710 224765749 -2758829 + (T)n Simple_repeat Simple_repeat 1 39 0 243 224 52 0 chr3 224765843 224765901 -2758677 - L1MB8 LINE L1 -6 6172 6112 603 141 10 0 chr3 224765902 224766001 -2758577 + AluJ/FLAM SINE Alu 2 101 -211 3163 176 70 15 chr3 224766075 224766757 -2757821 - L1MB5 LINE L1 -17 6157 5438 2567 38 0 0 chr3 224766781 224767074 -2757504 + AluY SINE Alu 1 293 -18 4145 184 17 16 chr3 224767146 224767966 -2756612 - L1MB3 LINE L1 -42 6141 5321 1478 120 0 0 chr3 224768057 224768249 -2756329 - AluSc SINE Alu -115 194 3 379 125 0 16 chr3 224768250 224768314 -2756264 - L1ME2 LINE L1 -188 5976 5914 485 212 121 0 chr3 224768322 224768421 -2756157 - MLT1C LTR MaLR -8 459 349 767 94 0 0 chr3 224768539 224768656 -2755922 + AluY SINE Alu 193 309 -2 2308 135 16 70 chr3 224768882 224769107 -2755471 + LTR57 LTR ERVL 1 194 -217 2312 86 10 0 chr3 224769107 224769399 -2755179 + AluSc SINE Alu 1 295 -14 2308 135 16 70 chr3 224769399 224769603 -2754975 + LTR57 LTR ERVL 194 407 -4 414 221 75 68 chr3 224769647 224769791 -2754787 - L1ME2 LINE L1 -222 5944 5800 3411 122 27 10 chr3 224769791 224770309 -2754269 + MER1A DNA MER1_type 1 527 0 414 221 75 68 chr3 224770309 224770436 -2754142 - L1ME2 LINE L1 -366 5800 5675 2270 110 0 0 chr3 224770759 224771059 -2753519 + AluSx SINE Alu 1 300 -12 283 295 65 40 chr3 224771444 224771722 -2752856 - L1ME2 LINE L1 -1127 5019 4735 1121 193 26 95 chr3 224771726 224772032 -2752546 - AluJo SINE Alu -14 298 14 1337 164 5 14 chr3 224772082 224772302 -2752276 - AluJo SINE Alu -94 218 1 327 241 38 93 chr3 224772329 224772566 -2752012 - L1ME2 LINE L1 -1431 4715 4492 2033 145 0 10 chr3 224773026 224773316 -2751262 + AluSx SINE Alu 1 287 -25 183 42 0 0 chr3 224773319 224773343 -2751235 + (TAAAA)n Simple_repeat Simple_repeat 2 25 0 1070 212 29 20 chr3 224773357 224773663 -2750915 - L1M4 LINE L1 -984 5162 4849 222 172 0 103 chr3 224775512 224775550 -2749028 + MIR SINE MIR 87 119 -89 2601 56 0 3 chr3 224775550 224775854 -2748724 - AluY SINE Alu -8 303 1 222 172 0 103 chr3 224775854 224775873 -2748705 + MIR SINE MIR 119 138 -70 345 245 151 0 chr3 224775973 224776122 -2748456 - L1M LINE L1 -757 5389 5239 * 968 198 208 31 chr3 224776118 224776278 -2748300 - L1M4 LINE L1 -951 5195 5065 2180 104 10 0 chr3 224776278 224776566 -2748012 - AluSg SINE Alu -19 291 1 968 198 208 31 chr3 224776566 224776794 -2747784 - L1M4 LINE L1 -1081 5065 4738 2217 117 0 3 chr3 224776795 224777093 -2747485 - AluSx SINE Alu -15 297 1 720 181 39 0 chr3 224777106 224777233 -2747345 - FLAM_C SINE Alu -10 133 2 708 240 6 11 chr3 224777233 224777416 -2747162 - L1M4 LINE L1 -1490 4656 4475 1436 192 49 65 chr3 224777416 224777786 -2746792 + MLT1C LTR MaLR 102 465 -2 21 0 0 0 chr3 224777860 224777881 -2746697 + AT_rich Low_complexity Low_complexity 1 21 0 1808 230 157 22 chr3 224778123 224778888 -2745690 + L1MC4 LINE L1 7173 8040 -2 1834 155 0 0 chr3 224778923 224779201 -2745377 - AluJb SINE Alu -20 292 15 21 0 0 0 chr3 224779469 224779490 -2745088 + AT_rich Low_complexity Low_complexity 1 21 0 1781 168 16 10 chr3 224779808 224780118 -2744460 + AluJb SINE Alu 1 312 0 2110 102 27 7 chr3 224780134 224780427 -2744151 + AluSq SINE Alu 1 299 -14 862 200 12 0 chr3 224780438 224780598 -2743980 + FRAM SINE Alu 2 163 -13 2063 123 0 7 chr3 224781140 224781462 -2743116 - AluSx SINE Alu 0 320 1 823 133 0 31 chr3 224781611 224781739 -2742839 - FLAM_C SINE Alu -9 124 1 1663 195 41 26 chr3 224781796 224782185 -2742393 - L1MB3 LINE L1 -9 6174 5780 324 183 33 0 chr3 224782232 224782292 -2742286 - L1MB3 LINE L1 -722 5452 5391 2107 105 14 3 chr3 224782295 224782589 -2741989 - AluSx SINE Alu -15 297 1 2278 82 0 0 chr3 224782615 224782923 -2741655 - AluSg SINE Alu 0 308 1 319 302 12 23 chr3 224782939 224783025 -2741553 - Charlie1 DNA MER1_type -2676 85 1 386 228 90 141 chr3 224783223 224783347 -2741231 + Charlie8 DNA MER1_type 10 116 -2301 709 224 0 7 chr3 224783347 224783494 -2741084 - L1PB4 LINE L1 0 6156 6011 386 228 90 141 chr3 224783494 224783624 -2740954 + Charlie8 DNA MER1_type 116 251 -2166 2104 136 0 0 chr3 224784329 224784623 -2739955 + AluSx SINE Alu 1 294 -18 314 293 95 0 chr3 224784645 224784761 -2739817 - HAL1 LINE L1 -2373 134 8 1960 40 4 0 chr3 224784898 224785123 -2739455 - AluY SINE Alu -85 226 1 1610 167 113 8 chr3 224785124 224785478 -2739100 + L1MB4 LINE L1 5789 6179 -1 260 174 188 0 chr3 224786059 224786128 -2738450 - MIR SINE MIR -62 200 119 1038 277 36 89 chr3 224786198 224786814 -2737764 + L1ME LINE L1 255 902 -5168 2463 68 6 19 chr3 224786814 224787125 -2737453 + AluSc SINE Alu 1 307 -2 1038 277 36 89 chr3 224787125 224787263 -2737315 + L1ME LINE L1 902 961 -5109 1754 155 3 47 chr3 224787263 224787580 -2736998 + AluJb SINE Alu 1 303 -9 1038 277 36 89 chr3 224787580 224787677 -2736901 + L1ME LINE L1 961 1062 -5008 359 173 68 120 chr3 224787672 224787724 -2736854 + L1ME LINE L1 2069 2122 -3958 * 2134 60 6 73 chr3 224787724 224787840 -2736738 + AluSp SINE Alu 1 123 -190 2278 103 6 19 chr3 224787840 224788152 -2736426 + AluSq SINE Alu 2 309 -4 2134 60 6 73 chr3 224788152 224788350 -2736228 + AluSp SINE Alu 123 294 -19 359 173 68 120 chr3 224788350 224788430 -2736148 + L1ME LINE L1 2122 2194 -3886 1410 235 53 5 chr3 224788442 224788859 -2735719 + L1ME LINE L1 2308 2744 -3336 1460 108 75 0 chr3 224789436 224789650 -2734928 + MER30 DNA MER1_type 1 230 0 589 237 82 0 chr3 224789666 224789801 -2734777 + MER58A DNA MER1_type 9 154 0 482 141 50 0 chr3 224789823 224789912 -2734666 + MER58B DNA MER1_type 114 341 0 2236 103 10 0 chr3 224790012 224790303 -2734275 + AluSg1 SINE Alu 1 294 -15 188 35 35 0 chr3 224790405 224790434 -2734144 + (TAAAAA)n Simple_repeat Simple_repeat 2 31 0 27 49 0 0 chr3 224790916 224790957 -2733621 + AT_rich Low_complexity Low_complexity 1 41 0 876 185 22 31 chr3 224791168 224791390 -2733188 + L1MC5 LINE L1 7696 7915 -46 925 188 0 0 chr3 224791792 224791946 -2732632 - FRAM SINE Alu -23 153 1 215 235 0 20 chr3 224792050 224792101 -2732477 - MIR3 SINE MIR -7 201 152 2015 147 3 3 chr3 224792370 224792682 -2731896 + AluSx SINE Alu 1 312 0 23 0 0 0 chr3 224792770 224792793 -2731785 + AT_rich Low_complexity Low_complexity 1 23 0 2446 82 0 7 chr3 224792869 224793173 -2731405 - AluSx SINE Alu -10 302 1 856 221 93 45 chr3 224793729 224794105 -2730473 + L1MC5 LINE L1 7354 7747 -214 2212 115 10 3 chr3 224794114 224794418 -2730160 + AluSc SINE Alu 1 306 -3 258 305 99 8 chr3 224795068 224795199 -2729379 + L2 LINE L2 2239 2381 -933 1384 122 14 33 chr3 224795204 224795417 -2729161 + AluJo SINE Alu 84 292 -20 403 281 179 66 chr3 224795447 224796137 -2728441 + L2 LINE L2 2442 3233 -39 22 0 0 0 chr3 224796139 224796161 -2728417 + AT_rich Low_complexity Low_complexity 1 22 0 1723 142 8 4 chr3 224796821 224797088 -2727490 + AluJo SINE Alu 1 268 -44 2537 65 3 0 chr3 224797337 224797646 -2726932 + AluY SINE Alu 1 310 -1 1986 72 102 0 chr3 224797816 224798081 -2726497 + AluSp SINE Alu 7 298 -15 25 0 0 0 chr3 224799247 224799272 -2725306 + GC_rich Low_complexity Low_complexity 1 25 0 350 269 0 15 chr3 224799286 224799420 -2725158 + (CCG)n Simple_repeat Simple_repeat 3 134 0 24 53 0 0 chr3 224799502 224799540 -2725038 + GC_rich Low_complexity Low_complexity 1 38 0 883 161 100 6 chr3 224800379 224800559 -2724019 + AluJb SINE Alu 85 281 -31 324 0 0 0 chr3 224800559 224800595 -2723983 + (CA)n Simple_repeat Simple_repeat 1 36 0 294 207 72 54 chr3 224800684 224800795 -2723783 - MIR SINE MIR 0 262 150 218 300 195 49 chr3 224800806 224801093 -2723485 - L3b LINE CR1 -148 1435 1107 2286 88 0 3 chr3 224801633 224801938 -2722640 + AluSx SINE Alu 1 304 -8 1855 152 7 0 chr3 224801959 224802261 -2722317 + AluJb SINE Alu 1 304 -8 1772 97 39 12 chr3 224802795 224803054 -2721524 - AluSx SINE Alu -46 266 1 1562 126 129 15 chr3 224803684 224803955 -2720623 + AluJb SINE Alu 1 302 0 2079 125 0 0 chr3 224804475 224804771 -2719807 + AluSx SINE Alu 1 296 -16 1121 171 0 50 chr3 224805289 224805511 -2719067 + AluJb SINE Alu 87 297 -15 362 214 87 0 chr3 224805544 224805647 -2718931 + MIR SINE MIR 85 196 -66 968 184 16 42 chr3 224805727 224805785 -2718793 - MER5A DNA MER1_type -4 185 127 2148 105 3 3 chr3 224805785 224806098 -2718480 + AluSq SINE Alu 1 313 0 968 184 16 42 chr3 224806098 224806229 -2718349 - MER5A DNA MER1_type -62 127 1 571 293 211 0 chr3 224806281 224806489 -2718089 - MIR SINE MIR 0 262 11 23 33 0 0 chr3 224806529 224806559 -2718019 + AT_rich Low_complexity Low_complexity 1 30 0 22 88 0 0 chr3 224806712 224806769 -2717809 + AT_rich Low_complexity Low_complexity 1 57 0 2190 93 20 0 chr3 224807810 224808110 -2716468 + AluSx SINE Alu 1 306 -6 249 349 55 0 chr3 224808252 224808361 -2716217 + L3 LINE CR1 1337 1451 -126 21 0 0 0 chr3 224808449 224808470 -2716108 + AT_rich Low_complexity Low_complexity 1 21 0 300 275 110 18 chr3 224808876 224808985 -2715593 + MER20 DNA MER1_type 94 212 -7 1775 153 0 3 chr3 224809853 224810135 -2714443 + AluJb SINE Alu 14 294 -18 1969 141 10 0 chr3 224810270 224810576 -2714002 + AluJb SINE Alu 1 309 -3 1516 153 37 17 chr3 224810791 224811085 -2713493 - AluJo SINE Alu -12 300 1 2347 83 0 0 chr3 224811671 224811972 -2712606 - AluY SINE Alu -10 301 1 1785 155 0 7 chr3 224812003 224812294 -2712284 + AluJo SINE Alu 5 293 -19 21 36 0 0 chr3 224812328 224812356 -2712222 + AT_rich Low_complexity Low_complexity 1 28 0 196 353 181 0 chr3 224814330 224814463 -2710115 - MIR SINE MIR -19 243 87 1980 129 7 0 chr3 224814573 224814867 -2709711 + AluSx SINE Alu 3 298 -14 206 298 128 0 chr3 224814975 224815069 -2709509 - L2 LINE L2 -619 2695 2590 21 0 0 0 chr3 224815249 224815270 -2709308 + AT_rich Low_complexity Low_complexity 1 21 0 822 154 8 0 chr3 224815270 224815393 -2709185 - FLAM_C SINE Alu -18 125 2 557 170 28 19 chr3 224815472 224815578 -2709000 - MLT1K LTR MaLR -1 587 481 56 79 0 0 chr3 224815836 224815962 -2708616 + AT_rich Low_complexity Low_complexity 1 126 0 676 231 68 26 chr3 224816025 224816259 -2708319 + MER2 DNA MER2_type 94 337 -8 1943 148 7 0 chr3 224816522 224816832 -2707746 - AluSx SINE Alu 0 312 1 1734 124 15 11 chr3 224816923 224817097 -2707481 - AluSx SINE Alu -1 311 134 2044 127 7 0 chr3 224817097 224817397 -2707181 - AluSx SINE Alu -10 302 1 1734 124 15 11 chr3 224817397 224817495 -2707083 - AluSx SINE Alu -178 134 38 2364 106 47 33 chr3 224817816 224818175 -2706403 - THE1B LTR MaLR 0 364 1 11966 84 12 8 chr3 224818175 224819327 -2705251 - THE1B-int LTR MaLR 0 1580 419 2258 83 0 13 chr3 224819327 224819629 -2704949 + AluY SINE Alu 1 298 -13 11966 84 12 8 chr3 224819629 224820050 -2704528 - THE1B-int LTR MaLR -1161 419 1 1247 114 15 40 chr3 224820050 224820252 -2704326 - THE1B LTR MaLR 0 364 168 228 174 65 0 chr3 224820276 224820322 -2704256 - AluSx SINE Alu -252 49 1 337 159 0 43 chr3 224820359 224820428 -2704150 - L1MB8 LINE L1 -2 6176 6111 1317 102 0 0 chr3 224820478 224820664 -2703914 - AluSc SINE Alu -15 294 109 1135 58 128 0 chr3 224820734 224820890 -2703688 - THE1B LTR MaLR -188 176 1 240 274 24 12 chr3 224820898 224820982 -2703596 - L1MC4 LINE L1 -194 7848 7764 2164 109 0 0 chr3 224821828 224822121 -2702457 - AluSx SINE Alu -19 293 1 896 152 33 7 chr3 224822677 224822828 -2701750 - AluJo SINE Alu -11 291 137 322 174 29 0 chr3 224822868 224822937 -2701641 - L1MB7 LINE L1 -1 6183 6113 353 195 35 23 chr3 224822965 224823052 -2701526 - L1MB8 LINE L1 -53 6125 6038 408 20 0 0 chr3 224823078 224823127 -2701451 + (CA)n Simple_repeat Simple_repeat 2 50 0 954 136 11 17 chr3 224823127 224823298 -2701280 + AluJb SINE Alu 133 302 -10 2221 183 171 55 chr3 224823307 224823909 -2700669 - L1MB7 LINE L1 -142 6042 5371 * 2428 190 60 130 chr3 224823903 224824253 -2700325 + L1MD3 LINE L1 4828 5201 -945 1938 157 0 0 chr3 224824253 224824565 -2700013 + AluJb SINE Alu 1 312 0 2428 190 60 130 chr3 224824565 224824732 -2699846 + L1MD3 LINE L1 5201 5378 -768 7616 31 3 72 chr3 224824732 224825767 -2698811 + SVA Other Other 424 1386 0 2428 190 60 130 chr3 224825767 224825794 -2698784 + L1MD3 LINE L1 5378 4446 -1700 1210 21 0 0 chr3 224825794 224825934 -2698644 + L1PA2 LINE L1 6016 6155 0 2428 190 60 130 chr3 224825934 224826829 -2697749 + L1MD3 LINE L1 4445 5401 -745 827 127 0 45 chr3 224826837 224826971 -2697607 - AluJo SINE Alu -175 137 10 1796 109 29 74 chr3 224827167 224827343 -2697235 - AluSx SINE Alu -14 298 116 2384 70 3 0 chr3 224827343 224827644 -2696934 - AluY SINE Alu -9 302 1 2234 91 0 3 chr3 224827644 224827940 -2696638 - AluSq SINE Alu -8 305 11 1796 109 29 74 chr3 224827940 224828074 -2696504 - AluSx SINE Alu -194 118 1 1817 136 0 33 chr3 224828273 224828575 -2696003 + AluJb SINE Alu 3 294 -18 501 108 312 0 chr3 224828580 224828673 -2695905 + AluSg SINE Alu 2 123 -187 28907 128 24 15 chr3 224828763 224829128 -2695450 - HUERS-P3 LTR ERV1 -3811 5108 4748 2141 101 3 16 chr3 224829128 224829436 -2695142 - AluSg SINE Alu 0 310 7 28907 128 24 15 chr3 224829436 224829870 -2694708 - HUERS-P3 LTR ERV1 -4171 4748 4320 2060 78 60 0 chr3 224829870 224830152 -2694426 + AluSc SINE Alu 1 299 -10 28907 128 24 15 chr3 224830152 224830994 -2693584 - HUERS-P3 LTR ERV1 -4599 4320 3487 2084 131 0 0 chr3 224830994 224831300 -2693278 + AluSx SINE Alu 6 311 -1 28907 128 24 15 chr3 224831300 224832521 -2692057 - HUERS-P3 LTR ERV1 -5432 3487 2279 3814 186 48 62 chr3 224832521 224833489 -2691089 - LTR13 LTR ERVK 0 954 1 28907 128 24 15 chr3 224833489 224834942 -2689636 - HUERS-P3 LTR ERV1 -6640 2279 749 3356 191 25 13 chr3 224834976 224835603 -2688975 - HUERS-P3 LTR ERV1 -8284 635 1 232 241 37 0 chr3 224835604 224835658 -2688920 - LTR9 LTR ERV1 0 612 557 1817 114 0 18 chr3 224835669 224835786 -2688792 + AluSx SINE Alu 31 149 -163 2188 181 81 76 chr3 224835786 224836427 -2688151 - LTR9B LTR ERV1 0 644 1 1817 114 0 18 chr3 224836427 224836582 -2687996 + AluSx SINE Alu 149 298 -14 1045 186 159 121 chr3 224836680 224837094 -2687484 - MER21B LTR ERV1 -429 434 5 1864 150 0 19 chr3 224837120 224837434 -2687144 - AluSx SINE Alu -1 311 4 279 271 74 82 chr3 224837530 224837652 -2686926 + L2 LINE L2 3180 3300 -13 210 394 56 6 chr3 224837766 224837926 -2686652 + L2 LINE L2 2867 3034 -238 38 0 0 0 chr3 224838127 224838165 -2686413 + AT_rich Low_complexity Low_complexity 1 38 0 312 256 11 44 chr3 224838165 224838255 -2686323 - L1MC4 LINE L1 -1342 6700 6614 301 297 25 51 chr3 224838185 224838271 -2686307 + L1MC4 LINE L1 6612 6696 -1346 * 1791 129 8 0 chr3 224838271 224838535 -2686043 - AluJo SINE Alu -46 266 1 301 297 25 51 chr3 224838535 224838566 -2686012 + L1MC4 LINE L1 6696 6726 -1316 214 149 21 21 chr3 224838991 224839038 -2685540 + T-rich Low_complexity Low_complexity 2 48 0 2129 80 7 0 chr3 224839215 224839502 -2685076 + AluSc SINE Alu 1 289 -20 448 318 162 64 chr3 224839608 224840374 -2684204 - L2 LINE L2 -50 3222 2391 2366 83 0 0 chr3 224840605 224840905 -2683673 - AluSc SINE Alu -9 300 1 1817 151 7 7 chr3 224840908 224841207 -2683371 - AluJo SINE Alu -13 299 1 2385 68 16 0 chr3 224841446 224841753 -2682825 + AluSx SINE Alu 1 312 0 236 324 72 9 chr3 224843835 224843946 -2680632 + MIR SINE MIR 71 188 -74 1393 176 72 18 chr3 224843988 224844267 -2680311 + AluJb SINE Alu 3 296 -16 21 36 0 0 chr3 224844862 224844890 -2679688 + AT_rich Low_complexity Low_complexity 1 28 0 2237 61 0 48 chr3 224844890 224845200 -2679378 + AluY SINE Alu 1 295 -16 2269 115 3 6 chr3 224895933 224896245 -2628333 - AluSq SINE Alu -2 311 1 202 291 196 20 chr3 224896422 224896547 -2628031 + L2 LINE L2 2602 2758 -556 1873 150 10 0 chr3 224896547 224896840 -2627738 + AluSx SINE Alu 1 296 -16 202 291 196 20 chr3 224896840 224896862 -2627716 + L2 LINE L2 2758 2775 -539 712 103 0 19 chr3 224896862 224896969 -2627609 + AluSg1 SINE Alu 2 106 -203 425 138 0 0 chr3 224897047 224897105 -2627473 - AluJ/FLAM SINE Alu -246 66 9 768 196 161 6 chr3 224897126 224897237 -2627341 + AluJo SINE Alu 2 94 -218 198 0 0 0 chr3 224897237 224897259 -2627319 + (TTAA)n Simple_repeat Simple_repeat 3 24 0 768 196 161 6 chr3 224897259 224897315 -2627263 + AluJo SINE Alu 94 195 -117 2414 99 0 6 chr3 224898015 224898327 -2626251 - AluSx SINE Alu -2 310 1 321 260 142 39 chr3 224898446 224898573 -2626005 + L1ME3 LINE L1 5988 6127 -35 369 243 10 29 chr3 224898949 224899052 -2625526 - L1M4 LINE L1 -1537 4609 4509 2172 108 3 7 chr3 224899086 224899382 -2625196 - AluJb SINE Alu -17 295 1 26 30 0 0 chr3 224900591 224900624 -2623954 + GC_rich Low_complexity Low_complexity 1 33 0 1946 128 0 0 chr3 224901120 224901402 -2623176 + AluSx SINE Alu 1 282 -30 1806 157 3 0 chr3 224902266 224902553 -2622025 + AluSx SINE Alu 11 298 -14 862 145 59 0 chr3 224902580 224902732 -2621846 - L1PA15 LINE L1 0 6165 6005 242 137 59 0 chr3 224902732 224902783 -2621795 + CT-rich Low_complexity Low_complexity 2 55 0 905 104 0 37 chr3 224902787 224902922 -2621656 - FLAM_C SINE Alu -5 138 9 1859 142 7 0 chr3 224902938 224903227 -2621351 - AluSx SINE Alu -21 291 1 564 226 140 48 chr3 224903273 224903459 -2621119 + LTR8A LTR ERV1 287 489 -238 2156 95 0 13 chr3 224903464 224903768 -2620810 - AluSg SINE Alu -10 300 1 1658 115 21 115 chr3 224903770 224904108 -2620470 - LTR8 LTR ERV1 -111 580 275 517 158 0 20 chr3 224904109 224904210 -2620368 + AluSg/x SINE Alu 212 310 0 541 162 29 19 chr3 224904212 224904317 -2620261 - LTR8 LTR ERV1 -399 292 187 295 321 179 0 chr3 224904607 224904747 -2619831 - MIR SINE MIR -56 206 42 1143 107 0 0 chr3 224905077 224905236 -2619342 - AluSc SINE Alu -150 159 1 633 185 7 30 chr3 224905255 224905390 -2619188 - FLAM_A SINE Alu 0 133 2 572 103 0 46 chr3 224905442 224905529 -2619049 - AluJ/FRAM SINE Alu -14 298 216 874 135 0 0 chr3 224905538 224905671 -2618907 - FLAM_C SINE Alu -10 133 1 896 176 19 0 chr3 224905818 224905977 -2618601 - FRAM SINE Alu -17 159 1 2948 150 27 8 chr3 224907135 224907649 -2616929 + L1M3 LINE L1 5260 5783 -397 309 251 314 0 chr3 224907684 224907859 -2616719 + L1M4 LINE L1 2812 3041 -3105 660 168 0 0 chr3 224907862 224907969 -2616609 + AluJo/FLAM SINE Alu 1 107 -205 1967 118 0 16 chr3 224907969 224908273 -2616305 - AluSx SINE Alu -13 299 1 923 129 0 0 chr3 224908766 224908898 -2615680 - FRAM SINE Alu -37 139 8 1351 170 59 0 chr3 224909355 224909626 -2614952 - AluJb SINE Alu -17 295 9 1396 168 55 4 chr3 224909793 224910067 -2614511 + AluJo SINE Alu 5 292 -20 313 258 33 17 chr3 224910111 224910231 -2614347 - L1MC4a LINE L1 -1907 5901 5780 336 248 101 37 chr3 224910385 224910494 -2614084 + MER5A DNA MER1_type 1 126 -62 253 311 117 6 chr3 224911131 224911311 -2613267 + L2 LINE L2 1488 1687 -1627 1067 196 66 35 chr3 224911463 224911587 -2612991 + AluJo SINE Alu 5 124 -178 1650 114 15 15 chr3 224911587 224911849 -2612729 + AluSx SINE Alu 45 306 -6 1067 196 66 35 chr3 224911849 224912010 -2612568 + AluJo SINE Alu 124 299 -3 692 194 35 7 chr3 224912158 224912302 -2612276 - AluJo SINE Alu -163 149 2 457 187 0 0 chr3 224912327 224912418 -2612160 - AluJo SINE Alu -5 307 217 1210 185 5 5 chr3 224912459 224912670 -2611908 - AluJo SINE Alu -91 221 11 245 114 0 0 chr3 224912781 224912816 -2611762 - Alu SINE Alu -207 101 67 * 250 192 0 39 chr3 224912785 224912837 -2611741 - AluJ/FLAM SINE Alu -203 99 50 1110 286 70 7 chr3 224912898 224913356 -2611222 - L1M4 LINE L1 -2461 3685 3199 834 200 73 12 chr3 224913361 224913526 -2611052 + FAM SINE Alu 1 49 0 471 285 47 31 chr3 224913554 224913747 -2610831 - L1M4 LINE L1 -2953 3193 2998 2114 80 49 3 chr3 224914183 224914470 -2610108 - AluSg SINE Alu -10 300 1 833 153 8 0 chr3 224914563 224914687 -2609891 + FAM SINE Alu 34 158 -27 1441 214 0 3 chr3 224914690 224914980 -2609598 - AluJo SINE Alu -9 303 15 375 267 203 53 chr3 224915215 224915496 -2609082 + LTR50 LTR ERVL 472 794 -1 2206 109 0 0 chr3 224915642 224915954 -2608624 + AluSx SINE Alu 1 312 0 1090 120 16 16 chr3 224916363 224916547 -2608031 + AluSx SINE Alu 1 184 -128 1747 126 36 36 chr3 224916915 224917216 -2607362 - AluSg SINE Alu -9 301 1 818 117 8 8 chr3 224917231 224917359 -2607219 - AluSp/q SINE Alu -10 303 176 1196 160 11 65 chr3 224917487 224917749 -2606829 - AluJo SINE Alu -63 249 2 246 302 105 58 chr3 224917841 224917904 -2606674 + MIR SINE MIR 77 136 -126 1901 119 20 0 chr3 224917904 224918198 -2606380 + AluSx SINE Alu 1 300 -12 246 302 105 58 chr3 224918198 224918306 -2606272 + MIR SINE MIR 136 256 -6 520 180 63 18 chr3 224918667 224918778 -2605800 + AluJo SINE Alu 22 137 -175 681 201 79 35 chr3 224918981 224919210 -2605368 + Charlie4a DNA MER1_type 269 507 -1 921 109 29 0 chr3 224919384 224919522 -2605056 + AluSg/x SINE Alu 165 306 -4 187 330 113 9 chr3 224920460 224920575 -2604003 + L2 LINE L2 3137 3263 -9 2116 105 7 0 chr3 224920831 224921126 -2603452 + AluSq SINE Alu 1 297 -16 276 224 7 24 chr3 224921249 224921341 -2603237 + AluJ/monomer SINE Alu 1 53 -249 1727 107 0 60 chr3 224921878 224922222 -2602356 - AluSx SINE Alu 0 326 1 5786 59 4 7 chr3 224922837 224923981 -2600597 + L1PA6 LINE L1 4857 6001 -153 503 88 0 0 chr3 224924081 224924149 -2600429 + MER41A LTR ERV1 487 554 0 372 79 342 0 chr3 224924149 224924225 -2600353 + MER41A-int LTR ERV1 1 102 -7654 416 169 24 24 chr3 224924235 224924318 -2600260 + MER41A-int LTR ERV1 1 83 -7673 1419 128 24 0 chr3 224924320 224924531 -2600047 + MER41B-int LTR ERV1 5729 5944 -2 1397 106 24 0 chr3 224924531 224924738 -2599840 + MER41B LTR ERV1 1 212 -423 243 83 0 0 chr3 224925172 224925208 -2599370 + MER41A LTR ERV1 177 212 -342 1844 167 25 11 chr3 224925208 224925574 -2599004 + MER41B LTR ERV1 177 547 -88 765 279 89 13 chr3 224925587 224925824 -2598754 - MLT1J LTR MaLR -256 255 1 251 354 61 0 chr3 224925824 224925906 -2598672 - L2 LINE L2 -64 3208 3122 1883 140 0 25 chr3 224926038 224926353 -2598225 + AluJb SINE Alu 1 307 -5 231 316 21 21 chr3 224926569 224926664 -2597914 - L2 LINE L2 -251 3062 2968 238 296 57 23 chr3 224926778 224926866 -2597712 + L2 LINE L2 3175 3265 -48 1757 186 0 0 chr3 224926942 224927249 -2597329 - AluJb SINE Alu -5 307 1 2219 96 0 13 chr3 224927440 224927753 -2596825 - AluSx SINE Alu -2 310 2 306 242 47 84 chr3 224927764 224927954 -2596624 - L1ME4a LINE L1 -3 6118 5936 1881 156 7 0 chr3 224927966 224928268 -2596310 - AluSx SINE Alu -8 304 1 746 177 0 0 chr3 224928556 224928680 -2595898 - FLAM_C SINE Alu -19 124 1 841 204 81 5 chr3 224928680 224928788 -2595790 - L1MA9 LINE L1 -38 6274 6176 387 0 0 0 chr3 224928788 224928831 -2595747 + (TG)n Simple_repeat Simple_repeat 1 43 0 841 204 81 5 chr3 224928831 224928933 -2595645 - L1MA9 LINE L1 -136 6176 6048 2304 57 0 0 chr3 224929194 224929503 -2595075 + AluY SINE Alu 1 309 0 1629 172 97 22 chr3 224929515 224929835 -2594743 + MLT1D LTR MaLR 162 505 0 2219 105 3 0 chr3 224929992 224930297 -2594281 + AluSq SINE Alu 1 306 -7 1915 123 0 32 chr3 224930312 224930621 -2593957 + AluJb SINE Alu 1 299 -13 320 314 109 7 chr3 224930838 224930975 -2593603 + L1MEc LINE L1 791 941 -5455 1913 131 0 0 chr3 224930975 224931280 -2593298 + AluSx SINE Alu 1 305 0 321 313 0 0 chr3 224931366 224931481 -2593097 + L1MEc LINE L1 975 1089 -5126 1132 149 0 0 chr3 224931489 224931664 -2592914 + AluSg/x SINE Alu 121 295 -17 388 296 56 39 chr3 224931664 224931820 -2592758 + L1MEc LINE L1 1109 1272 -4933 1977 154 64 5 chr3 224931820 224932196 -2592382 + L1MC3 LINE L1 6705 7102 -683 289 261 0 65 chr3 224932201 224932293 -2592285 + MLT1F1 LTR MaLR 45 130 -437 5165 70 36 0 chr3 224932294 224932961 -2591617 + LTR8 LTR ERV1 1 691 0 413 157 0 14 chr3 224932962 224933032 -2591546 - AluS SINE Alu -243 70 2 2502 30 7 0 chr3 224933369 224933671 -2590907 + AluY SINE Alu 1 304 -7 1800 130 0 42 chr3 224933891 224934199 -2590379 + AluSg SINE Alu 1 295 -15 2349 78 3 3 chr3 224934292 224934599 -2589979 + AluSx SINE Alu 1 307 -5 591 181 9 0 chr3 224934651 224934756 -2589822 + U6 snRNA snRNA 1 106 -1 371 303 49 0 chr3 224934904 224935026 -2589552 - L2 LINE L2 0 3272 3145 2393 229 89 41 chr3 224935055 224935153 -2589425 + L1ME3 LINE L1 5078 5170 -992 1950 113 0 11 chr3 224935153 224935523 -2589055 + AluSc SINE Alu 3 369 0 2393 229 89 41 chr3 224935523 224936168 -2588410 + L1ME3 LINE L1 5170 5892 -270 1607 149 7 7 chr3 224936168 224936443 -2588135 + AluJb SINE Alu 1 275 -37 2393 229 89 41 chr3 224936443 224936697 -2587881 + L1ME3 LINE L1 5892 6132 -30 2266 88 7 0 chr3 224936697 224937002 -2587576 + AluSp SINE Alu 1 307 -6 242 269 149 37 chr3 224937050 224937184 -2587394 - L2 LINE L2 -181 3091 2943 2109 108 17 0 chr3 224937247 224937544 -2587034 + AluSx SINE Alu 1 302 -10 209 232 0 29 chr3 224938188 224938257 -2586321 + MIR SINE MIR 60 126 -136 3263 148 137 21 chr3 224938437 224939057 -2585521 - MER50 LTR ERV1 -23 711 20 1477 107 18 0 chr3 224939095 224939320 -2585258 + AluSp SINE Alu 85 313 0 402 289 66 8 chr3 224939342 224939463 -2585115 + L2 LINE L2 3145 3272 0 2195 110 3 0 chr3 224939931 224940241 -2584337 + AluSp SINE Alu 1 311 -2 974 156 0 0 chr3 224941453 224941613 -2582965 + AluSg/x SINE Alu 146 305 -5 1802 137 7 3 chr3 224941920 224942212 -2582366 + AluSx SINE Alu 17 309 -3 763 220 129 0 chr3 224942716 224942902 -2581676 + MIR SINE MIR 43 252 -10 23 54 0 0 chr3 224942950 224942987 -2581591 + AT_rich Low_complexity Low_complexity 1 37 0 1767 153 0 3 chr3 224942988 224943275 -2581303 - AluJo SINE Alu -25 287 2 2201 74 0 10 chr3 224943403 224943701 -2580877 - AluY SINE Alu -16 295 1 938 90 14 21 chr3 224944172 224944317 -2580261 - AluSg/x SINE Alu -20 292 149 774 229 125 11 chr3 224944326 224944606 -2579972 - L1M4 LINE L1 -985 5161 4850 1986 125 3 0 chr3 224944609 224944896 -2579682 + AluSx SINE Alu 1 288 -24 2044 106 0 42 chr3 224944925 224945236 -2579342 + AluSx SINE Alu 1 298 -14 1965 115 30 0 chr3 224945359 224945663 -2578915 - AluSp SINE Alu 0 313 1 281 26 26 0 chr3 224945684 224945722 -2578856 + (TTCC)n Simple_repeat Simple_repeat 1 39 0 503 261 18 12 chr3 224945774 224945939 -2578639 + AluSp SINE Alu 3 168 -145 1156 148 5 16 chr3 224946358 224946547 -2578031 + AluSp SINE Alu 111 297 -16 2023 146 0 0 chr3 224946657 224946965 -2577613 + AluSx SINE Alu 3 310 -2 234 0 0 0 chr3 224946970 224946996 -2577582 + (GA)n Simple_repeat Simple_repeat 1 26 0 2039 125 0 3 chr3 224947513 224947817 -2576761 + AluSx SINE Alu 1 303 -9 1075 232 64 6 chr3 224947819 224948128 -2576450 - MER33 DNA MER1_type -2 322 1 2316 72 0 7 chr3 224948951 224949256 -2575322 + AluY SINE Alu 1 303 -8 412 280 64 32 chr3 224950148 224950305 -2574273 + LTR67 LTR ERVL 2 163 -394 651 237 8 0 chr3 224950456 224950587 -2573991 - FLAM_A SINE Alu -1 132 1 2100 151 0 0 chr3 224950862 224951174 -2573404 - AluSx SINE Alu 0 312 1 1502 202 21 3 chr3 224951176 224951463 -2573115 - AluJo SINE Alu -19 293 2 302 0 26 0 chr3 224951471 224951509 -2573069 + (TATTG)n Simple_repeat Simple_repeat 2 40 0 419 173 0 13 chr3 224951509 224951579 -2572999 - AluJo SINE Alu -22 286 217 1406 181 5 0 chr3 224951620 224951835 -2572743 - AluJo SINE Alu -91 221 6 305 116 0 0 chr3 224951941 224951995 -2572583 - AluJ/FLAM SINE Alu -203 99 50 1047 301 68 4 chr3 224952055 224952513 -2572065 - L1M4 LINE L1 -2461 3685 3199 850 194 73 12 chr3 224952518 224952683 -2571895 + FAM SINE Alu 1 49 0 295 211 77 48 chr3 224952710 224952919 -2571659 - L1M4 LINE L1 -2953 3193 2979 1057 189 6 0 chr3 224953211 224953386 -2571192 + AluSg/x SINE Alu 134 309 -3 659 236 90 45 chr3 224953492 224953848 -2570730 - L1MC5 LINE L1 -44 7917 7546 205 54 54 27 chr3 224954113 224954150 -2570428 + C-rich Low_complexity Low_complexity 5 42 0 2061 139 17 10 chr3 224954528 224954830 -2569748 + AluSx SINE Alu 1 304 -8 1521 93 19 9 chr3 224956514 224956729 -2567849 + AluSx SINE Alu 39 255 -57 4835 140 46 1 chr3 224956952 224957786 -2566792 - Tigger1 DNA MER2_type -52 2366 1496 1014 178 122 23 chr3 224957786 224958000 -2566578 - AluJo SINE Alu -51 261 27 6745 194 37 34 chr3 224958017 224958834 -2565744 - Tigger1 DNA MER2_type -940 1478 654 2277 99 30 3 chr3 224958834 224959136 -2565442 - AluSx SINE Alu -2 310 1 6745 194 37 34 chr3 224959136 224959728 -2564850 - Tigger1 DNA MER2_type -1764 654 65 1021 80 0 29 chr3 224959843 224959980 -2564598 + FLAM_C SINE Alu 1 133 0 1809 129 11 22 chr3 224960058 224960336 -2564242 - AluJb SINE Alu -23 289 15 1461 171 33 30 chr3 224960740 224960920 -2563658 - AluJb SINE Alu -2 310 127 1801 114 15 15 chr3 224960920 224961184 -2563394 - AluSx SINE Alu -4 308 45 1461 171 33 30 chr3 224961184 224961308 -2563270 - AluJb SINE Alu -185 127 5 258 311 117 6 chr3 224961460 224961640 -2562938 - L2 LINE L2 -1627 1687 1488 226 367 0 0 chr3 224962276 224962355 -2562223 + C-rich Low_complexity Low_complexity 2 80 0 209 208 0 0 chr3 224964053 224964101 -2560477 + (TA)n Simple_repeat Simple_repeat 1 48 0 2329 102 3 10 chr3 224965153 224965467 -2559111 + AluSx SINE Alu 1 312 0 306 314 179 0 chr3 224965598 224965738 -2558840 - MIR SINE MIR -56 206 42 1329 70 0 0 chr3 224966068 224966224 -2558354 - AluSc SINE Alu -150 159 4 2208 112 10 3 chr3 224966393 224966689 -2557889 + AluSx SINE Alu 1 298 -14 283 265 163 41 chr3 224967165 224967312 -2557266 + MIR3 SINE MIR 17 181 -27 22 0 0 0 chr3 224967822 224967844 -2556734 + AT_rich Low_complexity Low_complexity 1 22 0 2504 67 0 13 chr3 224967965 224968278 -2556300 + AluY SINE Alu 1 309 -2 324 194 43 21 chr3 224968289 224968382 -2556196 + L1M4 LINE L1 5737 5831 -347 2315 115 3 0 chr3 224968382 224968686 -2555892 + AluSp SINE Alu 1 305 -8 790 154 0 8 chr3 224968689 224968812 -2555766 - AluJo/FLAM SINE Alu -189 123 2 879 162 0 0 chr3 224969694 224969830 -2554748 - FLAM_C SINE Alu -2 141 6 21 0 0 0 chr3 224969835 224969856 -2554722 + AT_rich Low_complexity Low_complexity 1 21 0 237 271 51 0 chr3 224970002 224970061 -2554517 - L2 LINE L2 -5 3308 3247 1259 180 43 112 chr3 224970086 224970408 -2554170 - AluJo SINE Alu -2 310 11 2287 97 7 3 chr3 224970424 224970724 -2553854 - AluSc SINE Alu -8 301 1 1038 124 0 0 chr3 224971226 224971363 -2553215 + AluSq/x SINE Alu 1 137 -176 2393 92 3 9 chr3 224971364 224971679 -2552899 + AluSp SINE Alu 1 313 0 906 171 55 0 chr3 224972109 224972290 -2552288 + MER20 DNA MER1_type 29 219 0 2360 101 0 0 chr3 224972734 224973031 -2551547 + AluSx SINE Alu 1 297 -15 1549 124 0 13 chr3 224973304 224973537 -2551041 - AluJb SINE Alu -7 305 76 575 131 19 37 chr3 224973594 224973701 -2550877 + FRAM SINE Alu 69 173 -3 23 0 0 0 chr3 224973729 224973752 -2550826 + AT_rich Low_complexity Low_complexity 1 23 0 1370 163 17 4 chr3 224973752 224973985 -2550593 - AluJo SINE Alu -76 236 1 226 197 66 49 chr3 224974033 224974094 -2550484 - MIR SINE MIR -133 129 68 227 91 0 23 chr3 224974106 224974150 -2550428 + (TTTG)n Simple_repeat Simple_repeat 2 44 0 1835 135 11 7 chr3 224974153 224974434 -2550144 - AluJo SINE Alu -30 282 1 360 198 198 0 chr3 224974453 224974574 -2550004 - L1M4 LINE L1 -2445 3701 3557 969 172 49 0 chr3 224974574 224974737 -2549841 - FRAM SINE Alu -13 163 1 500 248 63 45 chr3 224974741 224974963 -2549615 - L1M4 LINE L1 -2616 3530 3305 2121 143 10 0 chr3 224975107 224975415 -2549163 + AluSx SINE Alu 1 311 -1 2645 134 42 28 chr3 224975417 224975915 -2548663 + L1MB7 LINE L1 5679 6183 -1 1033 78 16 0 chr3 224975923 224976052 -2548526 + AluY SINE Alu 1 131 -180 2227 118 0 0 chr3 224976054 224976351 -2548227 + AluSx SINE Alu 1 297 -15 492 368 64 10 chr3 224976729 224976976 -2547602 + MIR SINE MIR 1 257 -5 2273 104 7 10 chr3 224977330 224977639 -2546939 - AluSg SINE Alu -2 308 1 1513 198 26 26 chr3 224977755 224978063 -2546515 - AluJo SINE Alu -4 308 1 2298 68 0 4 chr3 224978179 224978478 -2546100 - AluSc SINE Alu 0 298 1 425 305 32 42 chr3 224978570 224978760 -2545818 + L2 LINE L2 2304 2491 -823 23 33 0 0 chr3 224978790 224978820 -2545758 + AT_rich Low_complexity Low_complexity 1 30 0 799 126 0 8 chr3 224978820 224978939 -2545639 - FLAM_C SINE Alu -15 118 1 213 346 154 0 chr3 224979338 224979474 -2545104 + L2 LINE L2 3107 3263 -9 2319 93 0 17 chr3 224979577 224979916 -2544662 - AluSg SINE Alu 0 334 1 481 110 27 0 chr3 224980192 224980265 -2544313 + BC200 scRNA scRNA 3 77 -123 2365 90 0 3 chr3 224980289 224980589 -2543989 - AluSq SINE Alu -14 299 1 439 208 13 27 chr3 224981817 224981966 -2542612 + CT-rich Low_complexity Low_complexity 1 147 0 1598 123 3 92 chr3 224981966 224982282 -2542296 - AluJb SINE Alu -5 307 20 228 350 7 29 chr3 224983598 224983735 -2540843 + L2 LINE L2 3137 3270 -2 495 223 82 0 chr3 224983801 224983921 -2540657 - MIR SINE MIR -63 145 71 275 206 63 0 chr3 224984920 224984983 -2539595 + LTR35 LTR ERV1 1 67 -551 1894 74 35 12 chr3 224985250 224985506 -2539072 + AluSx SINE Alu 6 267 -45 270 185 19 0 chr3 224985753 224985807 -2538771 - Alu SINE Alu -247 55 1 1447 224 0 23 chr3 224985957 224986261 -2538317 - AluJo SINE Alu -15 297 1 2218 100 38 0 chr3 224986526 224986817 -2537761 + AluSc SINE Alu 1 302 -7 2267 116 3 0 chr3 224987364 224987666 -2536912 - AluSg SINE Alu -7 303 1 1882 152 0 17 chr3 224987672 224987968 -2536610 - AluJo SINE Alu -21 291 1 819 109 8 8 chr3 224987985 224988113 -2536465 - AluY SINE Alu 0 311 184 279 84 7 133 chr3 224988862 224989005 -2535573 + (CCCCG)n Simple_repeat Simple_repeat 5 129 0 216 0 0 0 chr3 224989150 224989174 -2535404 + (TTTTC)n Simple_repeat Simple_repeat 2 25 0 1536 100 29 21 chr3 224989176 224989416 -2535162 - AluJb SINE Alu -70 242 1 200 247 6 108 chr3 224989432 224989590 -2534988 + C-rich Low_complexity Low_complexity 2 143 0 207 273 26 65 chr3 224990049 224990126 -2534452 + MIR SINE MIR 84 157 -105 2272 95 0 3 chr3 224991128 224991600 -2532978 + AluSg SINE Alu 1 471 0 1001 90 23 17 chr3 224991423 224991687 -2532891 + (GAAA)n Simple_repeat Simple_repeat 1 265 0 2097 115 7 0 chr3 224992883 224993169 -2531409 + AluSx SINE Alu 22 309 -3 2051 96 11 7 chr3 224993177 224993486 -2531092 - AluSq SINE Alu 0 322 13 3404 108 100 0 chr3 224993527 224994066 -2530512 + LTR61 LTR ERV1 1 593 -2 1513 105 0 0 chr3 224994066 224994266 -2530312 + AluSp SINE Alu 111 310 -3 787 166 7 0 chr3 224994267 224994406 -2530172 + L1MB5 LINE L1 5866 6005 -169 2132 118 0 20 chr3 224994417 224994722 -2529856 - AluSx SINE Alu -13 299 1 1077 82 15 0 chr3 224994722 224994856 -2529722 - AluSq/x SINE Alu -176 136 1 529 201 86 14 chr3 224994927 224995066 -2529512 - LTR35 LTR ERV1 0 618 470 1973 74 31 8 chr3 224995246 224995502 -2529076 - AluSx SINE Alu -45 267 6 275 206 63 0 chr3 224995769 224995832 -2528746 - LTR35 LTR ERV1 -551 67 1 495 223 82 0 chr3 224996831 224996951 -2527627 + MIR SINE MIR 71 196 -63 228 350 7 29 chr3 224997017 224997154 -2527424 - L2 LINE L2 -2 3270 3137 1598 123 3 92 chr3 224998470 224998786 -2525792 + AluJb SINE Alu 20 307 -5 439 208 13 27 chr3 224998786 224998935 -2525643 + GA-rich Low_complexity Low_complexity 1 147 0 2476 82 0 9 chr3 225000163 225000479 -2524099 + AluSq SINE Alu 1 313 0 906 171 55 0 chr3 225000909 225001090 -2523488 + MER20 DNA MER1_type 29 219 0 2443 84 3 0 chr3 225001534 225001830 -2522748 + AluSx SINE Alu 1 297 -15 237 289 150 15 chr3 225002029 225002157 -2522421 + L1ME4a LINE L1 5815 5924 -197 2272 96 10 19 chr3 225002157 225002470 -2522108 + AluSx SINE Alu 1 310 -2 237 289 150 15 chr3 225002470 225002607 -2521971 + L1ME4a LINE L1 5924 6116 -5 301 284 134 30 chr3 225002916 225003050 -2521528 + L2 LINE L2 3165 3312 -1 * 448 270 46 35 chr3 225003049 225003223 -2521355 - MIR SINE MIR -86 176 1 244 343 64 0 chr3 225003523 225003663 -2520915 + MER103 DNA DNA 3 151 -15 2290 108 3 0 chr3 225003665 225003961 -2520617 - AluSx SINE Alu -15 297 1 347 206 43 11 chr3 225003961 225004053 -2520525 - L1MB8 LINE L1 -347 5831 5737 2299 56 3 14 chr3 225004064 225004351 -2520227 - AluY SINE Alu -2 309 26 2288 119 0 0 chr3 225005061 225005356 -2519222 + AluSx SINE Alu 1 295 -17 2349 77 3 10 chr3 225005599 225005899 -2518679 - AluSq SINE Alu -15 298 1 180 326 0 0 chr3 225006099 225006148 -2518430 + MIR3 SINE MIR 111 159 -49 351 0 0 0 chr3 225006885 225006924 -2517654 + (TTTA)n Simple_repeat Simple_repeat 2 40 0 1497 176 30 36 chr3 225006926 225007227 -2517351 - AluJb SINE Alu -13 299 1 306 0 0 0 chr3 225007242 225007276 -2517302 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 2357 68 0 0 chr3 225007277 225007555 -2517023 - AluSg SINE Alu -32 278 1 2506 68 3 0 chr3 225008105 225008401 -2516177 - AluY SINE Alu -14 297 1 2208 116 3 7 chr3 225008497 225008799 -2515779 - AluSx SINE Alu -11 301 1 1614 206 3 0 chr3 225008858 225009189 -2515389 + AluJb SINE Alu 20 351 0 2302 121 0 0 chr3 225009635 225009941 -2514637 - AluSx SINE Alu -6 306 1 317 333 58 31 chr3 225009966 225010191 -2514387 - MIR SINE MIR 0 262 32 2371 93 0 3 chr3 225010365 225010667 -2513911 + AluSx SINE Alu 2 302 -10 927 75 0 30 chr3 225011098 225011231 -2513347 - FLAM_C SINE Alu -3 130 2 362 305 96 23 chr3 225011720 225011897 -2512681 + MIR SINE MIR 50 239 -23 2256 131 0 0 chr3 225013056 225013368 -2511210 - AluSx SINE Alu 0 312 1 2293 104 0 13 chr3 225013447 225013756 -2510822 - AluY SINE Alu -6 305 1 1825 149 45 14 chr3 225013845 225014134 -2510444 - AluJb SINE Alu -14 298 1 407 143 52 0 chr3 225014667 225014744 -2509834 + MLT1B LTR MaLR 260 340 -50 323 284 112 9 chr3 225014744 225014860 -2509718 - HAL1b LINE L1 -2 1346 1219 1350 146 189 0 chr3 225014865 225015119 -2509459 - AluSx SINE Alu 0 302 1 332 274 78 45 chr3 225015602 225015781 -2508797 + MER5A DNA MER1_type 1 185 -4 1902 144 0 18 chr3 225015882 225016167 -2508411 + AluJb SINE Alu 1 280 -32 2106 148 3 0 chr3 225016340 225016651 -2507927 + AluSx SINE Alu 1 312 0 211 128 0 26 chr3 225018076 225018115 -2506463 + (CTG)n Simple_repeat Simple_repeat 2 39 0 427 213 0 0 chr3 225019017 225019097 -2505481 + FLAM SINE Alu 43 122 -21 1389 192 7 45 chr3 225019111 225019227 -2505351 + AluJo SINE Alu 1 120 -192 2218 82 20 0 chr3 225019227 225019521 -2505057 - AluSp SINE Alu -13 300 1 1389 192 7 45 chr3 225019521 225019696 -2504882 + AluJo SINE Alu 120 281 -31 204 40 0 0 chr3 225019697 225019722 -2504856 + (GA)n Simple_repeat Simple_repeat 1 25 0 1689 229 52 9 chr3 225020087 225020351 -2504227 - MLT1C LTR MaLR -7 460 168 2003 98 95 0 chr3 225020351 225020625 -2503953 - AluSx SINE Alu -8 304 5 1689 229 52 9 chr3 225020625 225020801 -2503777 - MLT1C LTR MaLR -299 168 1 382 232 251 14 chr3 225020933 225021122 -2503456 - MIR SINE MIR -28 234 3 523 196 245 0 chr3 225021681 225021844 -2502734 - L1MB4 LINE L1 0 6180 5978 205 362 117 0 chr3 225022708 225022802 -2501776 + MIR SINE MIR 23 127 -81 791 219 6 0 chr3 225023335 225023495 -2501083 + FRAM SINE Alu 1 161 -5 2426 88 7 0 chr3 225023888 225024196 -2500382 + AluSp SINE Alu 1 310 -3 2261 111 0 0 chr3 225026516 225026814 -2497764 - AluSx SINE Alu -14 298 1 204 235 0 103 chr3 225029316 225029384 -2495194 + L3 LINE CR1 1517 1577 0 1851 167 3 23 chr3 225030284 225030590 -2493988 + AluJo SINE Alu 1 300 -12 1227 176 62 76 chr3 225030893 225031183 -2493395 + AluSx SINE Alu 1 286 -26 565 143 98 9 chr3 225031245 225031357 -2493221 - FLAM_C SINE Alu -9 124 3 2284 98 0 14 chr3 225032926 225033223 -2491355 + AluSg SINE Alu 1 293 -17 10106 43 2 145 chr3 225033378 225034995 -2489583 + SVA Other Other 1 1386 0 2329 95 7 0 chr3 225035026 225035322 -2489256 - AluSx SINE Alu -14 298 1 2000 85 19 4 chr3 225035594 225035853 -2488725 + AluSx SINE Alu 40 302 -10 927 75 0 30 chr3 225036284 225036417 -2488161 - FLAM_C SINE Alu -3 130 2 362 305 96 23 chr3 225036906 225037083 -2487495 + MIR SINE MIR 50 239 -23 2192 122 0 3 chr3 225038242 225038545 -2486033 - AluSx SINE Alu 0 312 11 2293 104 0 13 chr3 225038635 225038944 -2485634 - AluY SINE Alu -6 305 1 1825 149 45 14 chr3 225039033 225039322 -2485256 - AluJb SINE Alu -14 298 1 450 266 186 13 chr3 225041393 225041619 -2482959 + L1ME LINE L1 5525 5789 -332 1012 132 7 0 chr3 225041806 225041958 -2482620 - AluJb SINE Alu -24 288 136 489 138 25 0 chr3 225042045 225042125 -2482453 - AluJb SINE Alu -147 165 84 1850 135 37 17 chr3 225042129 225042426 -2482152 - AluSx SINE Alu -9 303 1 25 0 0 0 chr3 225042457 225042482 -2482096 + AT_rich Low_complexity Low_complexity 1 25 0 204 276 58 46 chr3 225042512 225042629 -2481949 + MIR SINE MIR 28 146 -62 837 189 0 0 chr3 225042631 225042758 -2481820 + FLAM_C SINE Alu 1 127 -16 27 29 0 0 chr3 225042798 225042832 -2481746 + AT_rich Low_complexity Low_complexity 1 34 0 2439 75 3 0 chr3 225042942 225043237 -2481341 + AluSx SINE Alu 1 296 -16 34 42 0 0 chr3 225043767 225043815 -2480763 + AT_rich Low_complexity Low_complexity 1 48 0 197 132 55 22 chr3 225043838 225043918 -2480660 + (TA)n Simple_repeat Simple_repeat 1 86 -8 2166 119 0 10 chr3 225043918 225044213 -2480365 - AluSg SINE Alu -18 292 1 197 132 55 22 chr3 225044213 225044223 -2480355 + (TA)n Simple_repeat Simple_repeat 86 94 0 1790 184 13 25 chr3 225044223 225044539 -2480039 - AluJo SINE Alu 0 312 1 364 156 0 16 chr3 225044546 225044610 -2479968 - MER94 DNA DNA -64 70 8 190 345 24 79 chr3 225045214 225045379 -2479199 + MIR3 SINE MIR 52 207 -1 988 176 6 0 chr3 225045436 225045601 -2478977 + AluSg/x SINE Alu 135 300 -10 2397 82 3 0 chr3 225046099 225046392 -2478186 + AluSg SINE Alu 1 294 -16 2166 131 3 10 chr3 225046418 225046730 -2477848 - AluSx SINE Alu -2 310 1 366 151 47 0 chr3 225047808 225047894 -2476684 + CT-rich Low_complexity Low_complexity 1 90 0 2292 95 0 3 chr3 225047895 225048367 -2476211 - AluSg SINE Alu 0 471 1 194 338 27 27 chr3 225049372 225049446 -2475132 - MIR SINE MIR -105 157 84 200 247 6 108 chr3 225049905 225050063 -2474515 + G-rich Low_complexity Low_complexity 2 143 0 1557 100 29 21 chr3 225050079 225050319 -2474259 + AluJb SINE Alu 1 242 -70 216 0 0 0 chr3 225050321 225050345 -2474233 + (GAAAA)n Simple_repeat Simple_repeat 2 25 0 342 65 0 160 chr3 225050490 225050659 -2473919 + (CGGGG)n Simple_repeat Simple_repeat 3 144 0 211 194 14 42 chr3 225050671 225050743 -2473835 + G-rich Low_complexity Low_complexity 3 72 0 857 110 8 0 chr3 225051480 225051607 -2472971 + AluY SINE Alu 184 311 0 2004 142 0 14 chr3 225051624 225051919 -2472659 + AluJo SINE Alu 1 291 -21 2229 130 0 0 chr3 225051925 225052225 -2472353 + AluSx SINE Alu 1 300 -12 2136 116 10 16 chr3 225052313 225052623 -2471955 + AluSx SINE Alu 1 308 -4 1703 209 65 14 chr3 225052627 225053072 -2471506 - L1ME1 LINE L1 -5 6161 5694 333 350 7 7 chr3 225053645 225053785 -2470793 + CT-rich Low_complexity Low_complexity 4 143 0 231 312 59 59 chr3 225054026 225054196 -2470382 - MIR3 SINE MIR -22 186 17 2623 48 0 0 chr3 225054473 225054782 -2469796 - AluY SINE Alu -2 309 1 215 261 61 43 chr3 225055126 225055241 -2469337 + MIR3 SINE MIR 3 119 -89 1885 112 35 0 chr3 225055328 225055586 -2468992 + AluSx SINE Alu 1 267 -45 484 105 12 12 chr3 225055586 225055672 -2468906 + (GAA)n Simple_repeat Simple_repeat 3 88 0 830 168 0 0 chr3 225055870 225056001 -2468577 + FLAM_C SINE Alu 5 135 -8 235 206 55 14 chr3 225056771 225056844 -2467734 + L2 LINE L2 1945 2020 -1294 2397 81 0 0 chr3 225056860 225057167 -2467411 - AluSx SINE Alu -5 307 1 426 248 190 18 chr3 225058849 225059075 -2465503 + L1ME LINE L1 5525 5789 -332 1000 132 7 0 chr3 225059262 225059414 -2465164 - AluJb SINE Alu -24 288 136 524 122 49 0 chr3 225059499 225059581 -2464997 - AluJb SINE Alu -143 169 84 1478 186 38 14 chr3 225059585 225059876 -2464702 - AluSg SINE Alu -9 301 4 194 116 23 0 chr3 225059879 225059922 -2464656 + (TA)n Simple_repeat Simple_repeat 1 44 0 664 331 25 11 chr3 225059922 225060200 -2464378 - AluJo SINE Alu -26 286 5 703 171 8 8 chr3 225060415 225060544 -2464034 - L1MB5 LINE L1 -180 5994 5866 1513 105 0 0 chr3 225060545 225060745 -2463833 - AluSp SINE Alu -3 310 111 3404 108 100 0 chr3 225060745 225061284 -2463294 - LTR61 LTR ERV1 -2 593 1 2238 96 18 0 chr3 225061324 225061606 -2462972 + AluSx SINE Alu 13 299 -13 1898 160 0 22 chr3 225061939 225062258 -2462320 + AluJo SINE Alu 1 312 0 1840 163 9 35 chr3 225062272 225062591 -2461987 + AluJb SINE Alu 1 311 -1 487 280 53 0 chr3 225062700 225062850 -2461728 + MIR3 SINE MIR 30 187 -21 2079 117 0 0 chr3 225064249 225064530 -2460048 + AluY SINE Alu 17 297 -14 878 168 14 121 chr3 225064539 225064819 -2459759 - L1M4 LINE L1 -1723 4423 4174 1926 133 17 7 chr3 225064821 225065115 -2459463 - AluJo SINE Alu -15 297 1 360 198 198 0 chr3 225065134 225065255 -2459323 - L1M4 LINE L1 -2445 3701 3557 969 172 49 0 chr3 225065255 225065418 -2459160 - FRAM SINE Alu -13 163 1 525 239 63 45 chr3 225065422 225065644 -2458934 - L1M4 LINE L1 -2616 3530 3305 1991 120 4 0 chr3 225066453 225066729 -2457849 + AluY SINE Alu 21 297 -14 878 168 14 121 chr3 225066738 225067018 -2457560 - L1M4 LINE L1 -1723 4423 4174 1581 204 10 0 chr3 225067020 225067314 -2457264 - AluSx SINE Alu -15 297 1 436 165 10 31 chr3 225067392 225067489 -2457089 + L1MB7 LINE L1 5424 5518 -666 1181 64 0 13 chr3 225067637 225067779 -2456799 + AluSg/x SINE Alu 154 295 -17 1864 153 51 25 chr3 225067779 225068024 -2456554 + L1MB7 LINE L1 5814 6072 -112 1930 162 7 10 chr3 225068024 225068326 -2456252 + AluJo SINE Alu 1 301 -11 1864 153 51 25 chr3 225068326 225068433 -2456145 + L1MB7 LINE L1 6072 6175 -9 1181 64 0 13 chr3 225068433 225068446 -2456132 + AluSg/x SINE Alu 295 307 -5 1890 193 111 52 chr3 225069005 225069099 -2455479 + MLT1D LTR MaLR 1 88 -417 1738 163 0 40 chr3 225069099 225069424 -2455154 + AluSx SINE Alu 1 312 0 1890 193 111 52 chr3 225069424 225069806 -2454772 + MLT1D LTR MaLR 88 505 0 2009 115 39 0 chr3 225070451 225070760 -2453818 - AluSx SINE Alu 0 320 1 1666 172 22 0 chr3 225071632 225071905 -2452673 - AluJo SINE Alu -22 290 12 912 173 40 0 chr3 225072012 225072162 -2452416 - FAM SINE Alu -3 46 1 774 195 12 61 chr3 225072194 225072358 -2452220 - FAM SINE Alu -5 44 1 806 141 0 129 chr3 225072388 225072551 -2452027 - FRAM SINE Alu -8 168 27 1582 172 9 91 chr3 225072583 225072778 -2451800 - AluSx SINE Alu -8 304 145 2249 112 0 3 chr3 225072778 225073081 -2451497 - AluSg SINE Alu -8 302 1 1582 172 9 91 chr3 225073081 225073216 -2451362 - AluSx SINE Alu -167 145 1 7465 161 132 27 chr3 225073423 225075010 -2449568 - MER52A LTR ERV1 -1 1754 1 2277 110 26 74 chr3 225075843 225076048 -2448530 + L1MA7 LINE L1 5852 6065 -226 2397 99 3 0 chr3 225076048 225076350 -2448228 + AluSc SINE Alu 1 303 -6 2277 110 26 74 chr3 225076350 225076410 -2448168 + L1MA7 LINE L1 6065 6126 -165 2492 84 0 0 chr3 225076410 225076721 -2447857 + AluY SINE Alu 1 311 0 2277 110 26 74 chr3 225076721 225076916 -2447662 + L1MA7 LINE L1 6126 6291 0 2251 122 3 0 chr3 225076916 225077220 -2447358 + AluSx SINE Alu 1 305 -7 239 200 0 0 chr3 225077320 225077370 -2447208 + L1MC4a LINE L1 7139 7188 -620 1051 187 0 0 chr3 225077376 225077542 -2447036 + AluJb SINE Alu 129 294 -18 2274 121 0 0 chr3 225077542 225077832 -2446746 + AluSq SINE Alu 1 290 -23 2306 108 0 7 chr3 225078183 225078490 -2446088 + AluSx SINE Alu 1 305 -7 2066 151 0 3 chr3 225079292 225079596 -2444982 + AluSx SINE Alu 1 303 -9 2181 122 7 0 chr3 225079600 225079896 -2444682 + AluSq SINE Alu 1 298 -15 2595 68 13 0 chr3 225080415 225080723 -2443855 - AluSp SINE Alu -1 312 1 1746 146 21 33 chr3 225080827 225080908 -2443670 - MER44D DNA MER2_type -1886 605 525 1202 185 91 82 chr3 225080908 225081248 -2443330 + MER2 DNA MER2_type 1 343 -1 1746 146 21 33 chr3 225081248 225081501 -2443077 - MER44D DNA MER2_type -1966 525 5 1184 193 18 18 chr3 225082008 225082231 -2442347 + MER58A DNA MER1_type 1 223 -1 1661 143 33 4 chr3 225082337 225082581 -2441997 - AluJo SINE Alu -61 251 1 260 172 69 52 chr3 225082744 225082802 -2441776 - L2 LINE L2 -6 3266 3208 498 178 237 53 chr3 225083009 225083178 -2441400 + Charlie4 DNA MER1_type 18 217 -1744 * 660 143 57 69 chr3 225083160 225083335 -2441243 + Charlie4 DNA MER1_type 1782 1954 -7 1974 111 54 0 chr3 225083646 225083946 -2440632 + AluSq SINE Alu 1 313 0 2059 141 3 0 chr3 225085768 225086081 -2438497 + AluSx SINE Alu 1 312 0 1148 129 0 0 chr3 225086652 225086815 -2437763 - AluSg/x SINE Alu -11 301 139 212 289 0 53 chr3 225086981 225087057 -2437521 - MIR3 SINE MIR -3 205 134 441 235 115 78 chr3 225087084 225087222 -2437356 + MER112 DNA MER1_type 36 186 -74 2423 73 10 0 chr3 225087222 225087523 -2437055 + AluSp SINE Alu 1 304 -9 441 235 115 78 chr3 225087523 225087601 -2436977 + MER112 DNA MER1_type 186 260 0 195 271 279 33 chr3 225087601 225087723 -2436855 - MIR3 SINE MIR -54 154 3 2184 100 30 0 chr3 225089116 225089417 -2435161 - AluSx SINE Alu -2 310 1 1245 99 109 19 chr3 225089481 225089692 -2434886 + MER30 DNA MER1_type 1 230 0 1544 189 6 68 chr3 225090090 225090226 -2434352 + AluJo SINE Alu 1 144 -168 1973 106 4 0 chr3 225090226 225090491 -2434087 + AluSg SINE Alu 39 304 -6 1971 139 27 10 chr3 225090496 225090797 -2433781 + AluSx SINE Alu 1 306 -6 1544 189 6 68 chr3 225090797 225090976 -2433602 + AluJo SINE Alu 148 302 -10 253 272 49 49 chr3 225090989 225091232 -2433346 + L1ME LINE L1 5663 5905 -216 2355 121 0 0 chr3 225091365 225091672 -2432906 + AluSg SINE Alu 1 307 -3 347 182 13 0 chr3 225091672 225091749 -2432829 + GA-rich Low_complexity Low_complexity 1 78 0 1982 157 0 3 chr3 225092070 225092370 -2432208 - AluJo SINE Alu -13 299 1 262 120 60 0 chr3 225092965 225093015 -2431563 + LTR16C LTR ERVL 229 281 -210 1125 238 70 14 chr3 225093022 225093308 -2431270 - MER5C DNA MER1_type -18 306 5 348 223 151 7 chr3 225093310 225093449 -2431129 + LTR16C LTR ERVL 274 432 -59 2282 100 0 0 chr3 225093453 225093744 -2430834 - AluSx SINE Alu -21 291 1 527 229 74 16 chr3 225093787 225093909 -2430669 + L2 LINE L2 3144 3272 0 2114 128 16 3 chr3 225093934 225094239 -2430339 + AluSp SINE Alu 1 309 -4 191 191 24 0 chr3 225094249 225094291 -2430287 - MIR3 SINE MIR -10 198 156 425 275 42 14 chr3 225094310 225094452 -2430126 + MER5B DNA MER1_type 17 162 -16 301 283 86 40 chr3 225094317 225094469 -2430109 - MER5A DNA MER1_type -24 165 7 * 245 366 71 0 chr3 225094460 225094572 -2430006 - MIR3 SINE MIR -38 170 51 * 2242 114 3 22 chr3 225094591 225094907 -2429671 - AluSx SINE Alu -2 310 1 2205 83 0 0 chr3 225095061 225095326 -2429252 - AluSq SINE Alu -48 265 1 23 54 0 0 chr3 225095501 225095538 -2429040 + AT_rich Low_complexity Low_complexity 1 37 0 225 155 12 83 chr3 225096453 225096537 -2428041 + L1ME LINE L1 5706 5783 -338 955 201 0 6 chr3 225096637 225096806 -2427772 + FAM SINE Alu 5 172 -3 1978 89 50 0 chr3 225096810 225097069 -2427509 + AluY SINE Alu 34 305 -6 1962 145 3 16 chr3 225097361 225097665 -2426913 + AluSx SINE Alu 1 300 -12 459 167 62 0 chr3 225097673 225097769 -2426809 + HY1 scRNA scRNA 1 102 -10 317 295 131 32 chr3 225098014 225098304 -2426274 - L2 LINE L2 -1342 1972 1648 2162 95 58 3 chr3 225098304 225098599 -2425979 + AluSx SINE Alu 2 312 0 317 295 131 32 chr3 225098599 225098620 -2425958 - L2 LINE L2 -1666 1648 1630 420 298 8 8 chr3 225098697 225098828 -2425750 - MIR SINE MIR -118 144 14 1983 213 64 2 chr3 225099327 225099843 -2424735 + L1ME1 LINE L1 4087 4634 -1512 * 3170 212 58 21 chr3 225099835 225100149 -2424429 + L1ME1 LINE L1 5290 5591 -575 2175 127 3 0 chr3 225100149 225100448 -2424130 + AluSx SINE Alu 1 300 -12 3170 212 58 21 chr3 225100448 225100974 -2423604 + L1ME1 LINE L1 5591 6161 -5 2183 124 7 0 chr3 225100978 225101284 -2423294 - AluSx SINE Alu -4 308 1 215 261 61 43 chr3 225101371 225101486 -2423092 - MIR3 SINE MIR -89 119 3 2623 48 0 0 chr3 225101830 225102139 -2422439 + AluY SINE Alu 1 309 -2 231 312 59 59 chr3 225102416 225102586 -2421992 + MIR3 SINE MIR 17 186 -22 333 350 7 7 chr3 225102827 225102967 -2421611 + GA-rich Low_complexity Low_complexity 4 143 0 213 271 43 143 chr3 225103439 225103524 -2421054 - MIR SINE MIR -21 241 174 207 0 0 0 chr3 225103524 225103547 -2421031 + (TG)n Simple_repeat Simple_repeat 2 24 0 213 271 43 143 chr3 225103547 225103601 -2420977 - MIR SINE MIR -88 174 116 265 288 131 13 chr3 225103715 225103868 -2420710 + MIR SINE MIR 90 260 -2 306 73 0 0 chr3 225104138 225104179 -2420399 + (CAGGG)n Simple_repeat Simple_repeat 1 41 0 210 251 118 82 chr3 225104344 225104539 -2420039 + MIR3 SINE MIR 7 208 0 199 286 102 10 chr3 225104537 225104635 -2419943 - MIR SINE MIR -91 171 65 * 2140 140 0 0 chr3 225105224 225105524 -2419054 + AluSx SINE Alu 1 300 -12 189 0 0 0 chr3 225107060 225107081 -2417497 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2146 97 28 7 chr3 225107101 225107390 -2417188 - AluSx SINE Alu -17 295 1 257 227 127 0 chr3 225107390 225107483 -2417095 - MIR SINE MIR -93 115 43 218 169 0 70 chr3 225109382 225109453 -2415125 + CT-rich Low_complexity Low_complexity 2 67 0 241 208 65 39 chr3 225109594 225109671 -2414907 + L1MC4 LINE L1 6785 6863 -1179 851 129 8 0 chr3 225109793 225109917 -2414661 + AluSq/x SINE Alu 1 125 -188 2014 123 3 38 chr3 225109921 225110237 -2414341 - AluSp SINE Alu -8 305 1 1968 147 7 3 chr3 225110246 225110553 -2414025 - AluSx SINE Alu -4 308 1 2199 118 3 3 chr3 225110555 225110861 -2413717 - AluSx SINE Alu -6 306 1 1444 115 67 0 chr3 225111044 225111252 -2413326 + AluJb SINE Alu 87 308 -4 275 277 42 42 chr3 225111259 225111425 -2413153 + HAL1b LINE L1 98 263 -1085 2192 99 14 3 chr3 225111497 225111816 -2412762 - AluSx SINE Alu 0 322 1 357 283 87 22 chr3 225111947 225112085 -2412493 + L2 LINE L2 3167 3313 0 22 35 0 0 chr3 225112414 225112443 -2412135 + AT_rich Low_complexity Low_complexity 1 29 0 787 176 0 8 chr3 225112558 225112689 -2411889 + AluJb SINE Alu 2 131 -181 341 176 143 33 chr3 225113489 225113580 -2410998 + L1MC3 LINE L1 7674 7774 -11 2108 121 7 10 chr3 225113582 225113887 -2410691 - AluSx SINE Alu -8 304 1 1151 141 5 4 chr3 225113955 225114167 -2410411 + AluSq SINE Alu 1 304 -9 226 83 0 0 chr3 225114279 225114315 -2410263 + HAL1 LINE L1 1502 1537 -970 225 94 0 0 chr3 225114322 225114354 -2410224 + (CCTA)n Simple_repeat Simple_repeat 2 33 0 2119 116 0 7 chr3 225114354 225114638 -2409940 - AluJb SINE Alu -30 282 1 600 235 27 11 chr3 225114785 225114972 -2409606 + L1MC5 LINE L1 7308 7497 -464 1941 138 27 10 chr3 225114977 225115274 -2409304 + AluSx SINE Alu 5 306 -6 893 216 12 0 chr3 225115282 225115453 -2409125 + FRAM SINE Alu 1 166 -10 253 272 49 49 chr3 225115466 225115709 -2408869 + L1ME LINE L1 5663 5905 -216 2355 121 0 0 chr3 225115842 225116149 -2408429 + AluSg SINE Alu 1 307 -3 347 182 13 0 chr3 225116149 225116226 -2408352 + GA-rich Low_complexity Low_complexity 1 78 0 1982 157 0 3 chr3 225116547 225116847 -2407731 - AluJo SINE Alu -13 299 1 262 120 60 0 chr3 225117442 225117492 -2407086 + LTR16C LTR ERVL 229 281 -210 1125 238 70 14 chr3 225117499 225117785 -2406793 - MER5C DNA MER1_type -18 306 5 348 223 151 7 chr3 225117787 225117926 -2406652 + LTR16C LTR ERVL 274 432 -59 2388 82 0 0 chr3 225117930 225118221 -2406357 - AluSx SINE Alu -21 291 1 527 229 74 16 chr3 225118264 225118386 -2406192 + L2 LINE L2 3144 3272 0 2212 115 16 0 chr3 225118619 225118923 -2405655 + AluSp SINE Alu 1 309 -4 191 191 24 0 chr3 225118933 225118975 -2405603 - MIR3 SINE MIR -10 198 156 425 275 42 14 chr3 225118994 225119136 -2405442 + MER5B DNA MER1_type 17 162 -16 301 283 86 40 chr3 225119001 225119153 -2405425 - MER5A DNA MER1_type -24 165 7 * 236 366 71 0 chr3 225119144 225119256 -2405322 - MIR3 SINE MIR -38 170 51 * 2242 114 3 22 chr3 225119275 225119591 -2404987 - AluSx SINE Alu -2 310 1 2205 83 0 0 chr3 225119745 225120010 -2404568 - AluSq SINE Alu -48 265 1 23 54 0 0 chr3 225120185 225120222 -2404356 + AT_rich Low_complexity Low_complexity 1 37 0 225 155 12 83 chr3 225121137 225121221 -2403357 + L1ME4a LINE L1 5706 5783 -338 327 308 17 25 chr3 225121258 225121321 -2403257 + L1ME4a LINE L1 5769 5831 -290 955 201 0 6 chr3 225121321 225121490 -2403088 + FAM SINE Alu 5 172 -3 1777 97 53 8 chr3 225121494 225121741 -2402837 + AluY SINE Alu 34 291 -20 327 308 17 25 chr3 225121741 225121792 -2402786 + L1ME4a LINE L1 5834 5887 -234 2378 87 0 0 chr3 225121792 225122079 -2402499 + AluSx SINE Alu 1 287 -25 23 54 0 0 chr3 225122080 225122117 -2402461 + AT_rich Low_complexity Low_complexity 1 37 0 762 220 129 0 chr3 225122165 225122351 -2402227 - MIR SINE MIR -10 252 43 2097 125 3 10 chr3 225122850 225123147 -2401431 - AluSx SINE Alu -1 311 17 2048 141 0 19 chr3 225123454 225123628 -2400950 - AluSx SINE Alu -5 307 140 2456 92 3 0 chr3 225123628 225123934 -2400644 - AluSq SINE Alu -6 307 1 2048 141 0 19 chr3 225123934 225124071 -2400507 - AluSx SINE Alu -172 140 2 2454 53 0 0 chr3 225124201 225124510 -2400068 + AluY SINE Alu 1 309 0 1522 181 94 19 chr3 225124522 225124842 -2399736 + MLT1D LTR MaLR 162 505 0 2379 109 3 0 chr3 225124999 225125310 -2399268 + AluSq SINE Alu 1 312 -1 2013 129 0 32 chr3 225125319 225125628 -2398950 + AluJb SINE Alu 1 299 -13 324 314 109 7 chr3 225125845 225125982 -2398596 + L1MEc LINE L1 791 941 -5455 2050 131 0 0 chr3 225125982 225126287 -2398291 + AluSx SINE Alu 1 305 0 306 313 0 0 chr3 225126373 225126488 -2398090 + L1MEc LINE L1 975 1089 -5126 1220 149 0 0 chr3 225126496 225126671 -2397907 + AluSg/x SINE Alu 119 293 -17 389 317 51 14 chr3 225126671 225126827 -2397751 + L1MEc LINE L1 1109 1272 -4933 3114 141 156 102 chr3 225126831 225127208 -2397370 + L1MC3 LINE L1 6709 7064 -721 272 261 0 65 chr3 225127208 225127300 -2397278 + MLT1F1 LTR MaLR 45 130 -437 5180 73 36 0 chr3 225127301 225127968 -2396610 + LTR8 LTR ERV1 1 691 0 3114 141 156 102 chr3 225127968 225128426 -2396152 + L1MC3 LINE L1 7063 7687 -98 767 226 7 0 chr3 225128429 225128575 -2396003 + AluJb SINE Alu 138 284 -28 404 122 171 0 chr3 225128596 225128678 -2395900 + L1MC3 LINE L1 7678 7773 -12 2294 101 27 0 chr3 225128680 225128976 -2395602 - AluSx SINE Alu -8 304 1 290 339 87 2 chr3 225129274 225129426 -2395152 + MIR SINE MIR 34 195 -67 2323 111 0 0 chr3 225129436 225129734 -2394844 - AluSg SINE Alu -12 298 1 2218 129 0 0 chr3 225130124 225130427 -2394151 - AluSg SINE Alu -7 303 1 2070 124 16 7 chr3 225130429 225130735 -2393843 - AluSx SINE Alu -3 309 1 2081 113 10 7 chr3 225130988 225131279 -2393299 + AluSg SINE Alu 1 292 -18 1493 198 72 3 chr3 225131279 225131613 -2392965 - MSTA LTR MaLR -64 364 8 1239 195 33 107 chr3 225131678 225131979 -2392599 - MLT1B LTR MaLR 0 390 68 838 172 0 0 chr3 225131979 225132107 -2392471 - FLAM_C SINE Alu -5 128 1 1239 195 33 107 chr3 225132107 225132145 -2392433 - MLT1B LTR MaLR -322 68 84 2399 70 10 7 chr3 225132145 225132443 -2392135 + AluSx SINE Alu 1 299 -13 1239 195 33 107 chr3 225132443 225132523 -2392055 - MLT1B LTR MaLR -305 85 1 1881 166 7 0 chr3 225132557 225132853 -2391725 + AluJo SINE Alu 1 298 -14 275 321 122 30 chr3 225132864 225132995 -2391583 + MIR SINE MIR 50 192 -70 262 203 13 13 chr3 225134362 225134441 -2390137 + GA-rich Low_complexity Low_complexity 3 81 0 2271 125 3 0 chr3 225134645 225134950 -2389628 - AluSg SINE Alu -4 306 1 900 164 68 11 chr3 225135173 225135350 -2389228 + MER5A DNA MER1_type 1 187 -2 2420 57 0 0 chr3 225135403 225135725 -2388853 - AluSx SINE Alu 0 322 1 237 33 0 0 chr3 225135840 225135870 -2388708 + (TG)n Simple_repeat Simple_repeat 2 31 0 285 85 128 0 chr3 225135940 225135987 -2388591 + MIR3 SINE MIR 113 165 -43 304 330 21 0 chr3 225136215 225136312 -2388266 - MIR SINE MIR -118 144 46 2533 204 55 30 chr3 225137358 225137470 -2387108 + L1ME1 LINE L1 4088 4196 -1950 2427 85 0 0 chr3 225137470 225137764 -2386814 + AluSg SINE Alu 1 294 -16 2533 204 55 30 chr3 225137764 225138381 -2386197 + L1ME1 LINE L1 4196 4835 -1311 2201 74 0 0 chr3 225138397 225138655 -2385923 - AluSx SINE Alu -15 297 40 581 225 17 0 chr3 225138676 225138796 -2385782 - FLAM_A SINE Alu -10 123 2 872 138 44 0 chr3 225138796 225138955 -2385623 + L1MB4 LINE L1 6015 6180 0 1519 216 51 0 chr3 225138995 225139389 -2385189 + L1ME1 LINE L1 5748 6161 -5 2010 126 3 14 chr3 225139514 225139808 -2384770 + AluSq SINE Alu 1 291 -22 195 42 0 0 chr3 225139808 225139832 -2384746 + (TA)n Simple_repeat Simple_repeat 2 25 0 271 0 25 25 chr3 225139972 225140012 -2384566 + (TTTA)n Simple_repeat Simple_repeat 3 42 0 2407 81 3 0 chr3 225140029 225140325 -2384253 + AluSq SINE Alu 1 297 -16 695 188 8 0 chr3 225140330 225140447 -2384131 - FLAM_C SINE Alu -15 118 1 1994 101 58 4 chr3 225140512 225140790 -2383788 + AluY SINE Alu 1 293 -18 978 114 0 0 chr3 225140796 225140928 -2383650 + AluSg/x SINE Alu 140 271 -39 377 215 11 0 chr3 225140928 225141021 -2383557 + GA-rich Low_complexity Low_complexity 3 96 0 25 0 0 0 chr3 225141023 225141048 -2383530 + AT_rich Low_complexity Low_complexity 1 25 0 185 154 26 0 chr3 225141066 225141105 -2383473 + (CATATA)n Simple_repeat Simple_repeat 3 42 0 476 188 12 0 chr3 225141153 225141238 -2383340 - MER44D DNA MER2_type 0 705 620 418 209 12 0 chr3 225141239 225141325 -2383253 - Tigger5 DNA MER2_type 0 2323 2237 463 147 0 84 chr3 225141337 225141372 -2383206 + Tigger5 DNA MER2_type 2 38 -380 2017 154 17 0 chr3 225141372 225141671 -2382907 - AluJo SINE Alu -8 304 1 463 147 0 84 chr3 225141671 225141730 -2382848 + Tigger5 DNA MER2_type 38 88 -330 249 250 0 0 chr3 225141788 225141840 -2382738 - Tigger5 DNA MER2_type -2271 52 1 * 1236 171 61 0 chr3 225141840 225142078 -2382500 - MER44D DNA MER2_type -85 524 2 811 162 34 7 chr3 225142130 225142278 -2382300 + L1PA16 LINE L1 6006 6157 -9 2290 102 3 0 chr3 225142303 225142596 -2381982 + AluSx SINE Alu 1 294 -18 348 119 0 0 chr3 225142896 225142955 -2381623 - Alu SINE Alu 0 300 242 2320 105 0 0 chr3 225142981 225143277 -2381301 - AluSx SINE Alu -16 296 1 310 207 0 121 chr3 225143304 225143630 -2380948 + G-rich Low_complexity Low_complexity 1 286 0 430 243 5 58 chr3 225143652 225143841 -2380737 + G-rich Low_complexity Low_complexity 1 179 0 224 112 0 119 chr3 225143880 225144014 -2380564 + (GGGGA)n Simple_repeat Simple_repeat 2 119 0 2349 110 3 0 chr3 225144650 225144960 -2379618 - AluSp SINE Alu -2 311 1 400 289 66 8 chr3 225145428 225145549 -2379029 - L2 LINE L2 0 3272 3145 1602 103 18 0 chr3 225145571 225145795 -2378783 - AluSp SINE Alu -1 312 85 3125 152 137 21 chr3 225145833 225146453 -2378125 + MER50 LTR ERV1 20 711 -23 213 232 0 29 chr3 225146633 225146702 -2377876 - MIR SINE MIR -136 126 60 2257 108 17 0 chr3 225147346 225147643 -2376935 - AluSx SINE Alu -10 302 1 244 269 149 37 chr3 225147706 225147840 -2376738 + L2 LINE L2 2943 3091 -181 253 229 45 51 chr3 225147846 225147888 -2376690 - L1MA10 LINE L1 -3 6331 5985 2418 88 7 0 chr3 225147888 225148193 -2376385 - AluSp SINE Alu -6 307 1 2264 228 91 40 chr3 225148193 225148446 -2376132 - L1ME3 LINE L1 -30 6132 5893 1733 149 7 7 chr3 225148446 225148721 -2375857 - AluJb SINE Alu -37 275 1 2264 228 91 40 chr3 225148721 225149365 -2375213 - L1ME3 LINE L1 -269 5893 5170 2084 113 0 11 chr3 225149365 225149735 -2374843 - AluSc SINE Alu 0 369 3 2264 228 91 40 chr3 225149735 225149833 -2374745 - L1ME3 LINE L1 -992 5170 5078 378 303 49 0 chr3 225149862 225149984 -2374594 + L2 LINE L2 3145 3272 0 597 181 9 0 chr3 225150132 225150237 -2374341 - U6 snRNA snRNA -1 106 1 2498 83 3 3 chr3 225150284 225150596 -2373982 - AluSx SINE Alu 0 312 1 1939 130 0 42 chr3 225150689 225150997 -2373581 - AluSg SINE Alu -15 295 1 2639 30 7 0 chr3 225151217 225151519 -2373059 - AluY SINE Alu -7 304 1 427 157 0 14 chr3 225151856 225151926 -2372652 + AluS SINE Alu 2 70 -243 5113 72 38 0 chr3 225151927 225152591 -2371987 - LTR8 LTR ERV1 0 691 3 1541 153 12 0 chr3 225152591 225152833 -2371745 + AluSg SINE Alu 64 308 -2 2409 62 3 10 chr3 225152835 225153139 -2371439 + AluY SINE Alu 3 304 -7 400 257 162 11 chr3 225153490 225153669 -2370909 + L2 LINE L2 1832 2037 -1277 2056 103 0 29 chr3 225153673 225153985 -2370593 - AluSq SINE Alu -10 303 1 220 309 152 34 chr3 225154013 225154191 -2370387 - L2 LINE L2 -238 3034 2836 535 278 220 22 chr3 225154229 225154643 -2369935 - L2 LINE L2 -655 2659 2164 2179 103 0 0 chr3 225154713 225155015 -2369563 + AluSx SINE Alu 1 302 -10 335 283 88 44 chr3 225155037 225155196 -2369382 + L2 LINE L2 3113 3278 -35 1038 93 75 0 chr3 225155272 225155433 -2369145 - AluSg/x SINE Alu -3 307 135 2375 72 0 3 chr3 225155433 225155738 -2368840 - AluSq SINE Alu -8 305 2 338 0 24 0 chr3 225157447 225157489 -2367089 + (CAAAA)n Simple_repeat Simple_repeat 3 45 0 427 139 13 25 chr3 225159877 225159956 -2364622 + AluSp/q SINE Alu 215 292 -21 231 200 0 0 chr3 225159968 225160018 -2364560 + L1ME4a LINE L1 6060 6109 -12 1393 142 173 16 chr3 225160072 225160326 -2364252 + AluSg SINE Alu 1 294 -6 677 214 0 0 chr3 225160326 225160443 -2364135 - AluJo/FLAM SINE Alu -194 118 2 25 31 0 0 chr3 225160784 225160816 -2363762 + AT_rich Low_complexity Low_complexity 1 32 0 286 229 180 16 chr3 225160829 225160951 -2363627 + L2 LINE L2 2234 2375 -939 252 0 0 0 chr3 225161002 225161030 -2363548 + (TAAAA)n Simple_repeat Simple_repeat 3 30 0 398 0 65 0 chr3 225161329 225161391 -2363187 + (TG)n Simple_repeat Simple_repeat 2 67 0 483 0 45 0 chr3 225161460 225161527 -2363051 + (TG)n Simple_repeat Simple_repeat 2 71 0 347 0 23 0 chr3 225161593 225161636 -2362942 + (TG)n Simple_repeat Simple_repeat 2 45 0 257 0 30 0 chr3 225161706 225161739 -2362839 + (TG)n Simple_repeat Simple_repeat 2 35 0 288 0 0 0 chr3 225161808 225161840 -2362738 + (TG)n Simple_repeat Simple_repeat 2 33 0 270 0 0 0 chr3 225161909 225161939 -2362639 + (TG)n Simple_repeat Simple_repeat 2 31 0 1963 81 44 14 chr3 225162902 225163198 -2361380 + AluSx SINE Alu 1 305 -7 818 118 31 0 chr3 225163781 225163908 -2360670 - AluJb SINE Alu -18 294 164 515 223 66 0 chr3 225163909 225164030 -2360548 - HAL1b LINE L1 -686 662 534 2065 111 0 32 chr3 225164048 225164363 -2360215 + AluSp SINE Alu 1 305 -8 772 154 0 8 chr3 225164366 225164489 -2360089 - AluJo/FLAM SINE Alu -189 123 2 216 263 0 88 chr3 225165323 225165403 -2359175 + L2 LINE L2 2985 3057 -215 262 189 91 167 chr3 225165630 225165684 -2358894 + MIR SINE MIR 8 65 -197 2249 46 0 11 chr3 225165684 225165968 -2358610 + AluY SINE Alu 1 281 -30 215 91 0 23 chr3 225165971 225166015 -2358563 + (CAAA)n Simple_repeat Simple_repeat 2 44 0 262 189 91 167 chr3 225166015 225166088 -2358490 + MIR SINE MIR 67 129 -133 1262 163 17 4 chr3 225166136 225166369 -2358209 + AluJo SINE Alu 1 236 -76 23 0 0 0 chr3 225166369 225166392 -2358186 + AT_rich Low_complexity Low_complexity 1 23 0 568 131 19 37 chr3 225166420 225166527 -2358051 - FRAM SINE Alu -3 173 69 1143 139 5 15 chr3 225166584 225166786 -2357792 + AluJb SINE Alu 76 275 -37 487 88 15 0 chr3 225166902 225166970 -2357608 - Alu SINE Alu -240 70 2 2158 86 0 10 chr3 225167123 225167424 -2357154 + AluSx SINE Alu 1 298 -14 467 110 27 0 chr3 225167448 225167521 -2357057 - BC200 scRNA scRNA -123 77 3 2181 77 0 17 chr3 225167797 225168094 -2356484 + AluSg SINE Alu 1 292 -18 1339 193 58 4 chr3 225168145 225168420 -2356158 + AluJo SINE Alu 1 290 -22 258 32 0 0 chr3 225168465 225168496 -2356082 + (TA)n Simple_repeat Simple_repeat 1 31 0 208 151 19 0 chr3 225168629 225168682 -2355896 + (CGGGG)n Simple_repeat Simple_repeat 1 54 0 35 130 0 0 chr3 225168691 225168745 -2355833 + GC_rich Low_complexity Low_complexity 1 54 0 5760 101 34 12 chr3 225168860 225170367 -2354211 + L1PA10 LINE L1 4610 6167 -1 576 179 80 0 chr3 225170757 225170869 -2353709 - AluSg/x SINE Alu -72 238 118 754 225 117 12 chr3 225170888 225171137 -2353441 - L1M4 LINE L1 -1022 5124 4850 2232 76 0 3 chr3 225171141 225171429 -2353149 + AluSc SINE Alu 2 288 -21 381 230 151 7 chr3 225171433 225171572 -2353006 - LTR16C LTR ERVL -59 432 274 860 263 57 16 chr3 225171574 225171821 -2352757 + MER5C DNA MER1_type 5 261 -63 7401 86 127 9 chr3 225171992 225173101 -2351477 + L1P LINE L1 2 1241 -4905 9737 54 0 1 chr3 225173290 225174478 -2350100 - L1P LINE L1 -1394 4752 3566 951 205 6 0 chr3 225224594 225224760 -2299818 + AluJb SINE Alu 131 297 -15 2023 159 0 0 chr3 225224969 225225278 -2299300 + AluSx SINE Alu 1 309 -3 335 292 162 62 chr3 225225302 225225406 -2299172 + L1ME4a LINE L1 5718 5810 -311 2076 120 7 10 chr3 225225406 225225707 -2298871 + AluSx SINE Alu 1 300 -12 335 292 162 62 chr3 225225707 225225941 -2298637 + L1ME4a LINE L1 5810 6090 -31 304 293 64 38 chr3 225226198 225226355 -2298223 - MIR SINE MIR -48 214 54 199 342 61 0 chr3 225226513 225226627 -2297951 - L3 LINE CR1 -488 1089 969 * 219 273 114 0 chr3 225226595 225226683 -2297895 - L2 LINE L2 0 3272 3175 2019 122 14 14 chr3 225226735 225226893 -2297685 - AluJb SINE Alu -17 295 135 2400 88 7 0 chr3 225226893 225227188 -2297390 - AluSq SINE Alu -16 297 1 2019 122 14 14 chr3 225227188 225227323 -2297255 - AluJb SINE Alu -176 136 2 188 317 83 0 chr3 225227469 225227529 -2297049 + L2 LINE L2 3157 3221 -51 1322 146 4 31 chr3 225227942 225228077 -2296501 + AluJo SINE Alu 1 130 -182 2163 102 3 3 chr3 225228077 225228407 -2296171 + AluSq SINE Alu 1 330 0 1322 146 4 31 chr3 225228407 225228496 -2296082 + AluJo SINE Alu 130 220 -92 256 159 0 0 chr3 225228496 225228540 -2296038 + FLAM SINE Alu 86 129 -4 2123 131 10 0 chr3 225228705 225228996 -2295582 + AluSx SINE Alu 1 294 -18 659 181 9 0 chr3 225229001 225229117 -2295461 - FLAM_C SINE Alu -16 117 1 23 0 0 0 chr3 225229189 225229212 -2295366 + AT_rich Low_complexity Low_complexity 1 23 0 870 129 0 0 chr3 225229702 225229834 -2294744 + FLAM_C SINE Alu 2 133 0 889 256 62 88 chr3 225230490 225230761 -2293817 + L2 LINE L2 2718 2994 -319 2384 83 0 3 chr3 225230761 225231051 -2293527 - AluSq SINE Alu -24 289 1 889 256 62 88 chr3 225231051 225231317 -2293261 + L2 LINE L2 2994 3313 0 2001 241 68 43 chr3 225231861 225232400 -2292178 + MLT1E2 LTR MaLR 1 558 -68 2316 104 3 0 chr3 225232400 225232698 -2291880 - AluSp SINE Alu -10 303 5 2001 241 68 43 chr3 225232698 225232761 -2291817 + MLT1E2 LTR MaLR 558 618 -8 2527 78 10 0 chr3 225232833 225233141 -2291437 - AluY SINE Alu 0 311 1 696 167 24 0 chr3 225233433 225233559 -2291019 + FLAM_A SINE Alu 5 133 0 297 208 0 0 chr3 225233950 225234003 -2290575 - MLT1D LTR MaLR -204 301 249 1568 185 8 0 chr3 225234007 225234272 -2290306 + AluJo SINE Alu 5 271 -41 234 331 57 40 chr3 225234803 225234927 -2289651 - MIR3 SINE MIR -25 183 58 2354 105 0 0 chr3 225235497 225235801 -2288777 + AluSg SINE Alu 6 309 -1 1676 147 3 60 chr3 225235829 225236176 -2288402 + AluJb SINE Alu 1 330 0 2388 99 3 0 chr3 225236178 225236481 -2288097 + AluSp SINE Alu 1 304 -9 269 146 62 0 chr3 225236740 225236788 -2287790 + AluSp/q SINE Alu 241 291 -12 2306 74 3 3 chr3 225236794 225237101 -2287477 + AluSg SINE Alu 1 307 0 567 214 166 7 chr3 225237143 225237288 -2287290 - MER5A DNA MER1_type -6 183 16 877 280 106 52 chr3 225237356 225237735 -2286843 + MLT1L LTR MaLR 123 533 -82 2403 88 3 0 chr3 225237735 225238031 -2286547 - AluSx SINE Alu -15 297 1 877 280 106 52 chr3 225238031 225238112 -2286466 + MLT1L LTR MaLR 533 608 -7 1553 173 50 50 chr3 225238234 225238486 -2286092 - LTR8 LTR ERV1 0 691 441 2577 70 0 0 chr3 225238486 225238787 -2285791 + AluSx SINE Alu 3 303 -9 1553 173 50 50 chr3 225238787 225239153 -2285425 - LTR8 LTR ERV1 -250 441 1 910 186 43 61 chr3 225239416 225239647 -2284931 + AluJo SINE Alu 85 311 -1 390 260 110 0 chr3 225239665 225239811 -2284767 + L1MC3 LINE L1 6110 6271 -1514 272 241 0 0 chr3 225239817 225239896 -2284682 + GA-rich Low_complexity Low_complexity 3 81 0 288 243 0 0 chr3 225239907 225240076 -2284502 + GA-rich Low_complexity Low_complexity 3 171 0 240 229 0 0 chr3 225240087 225240196 -2284382 + GA-rich Low_complexity Low_complexity 3 111 0 405 296 0 0 chr3 225240294 225240463 -2284115 + GA-rich Low_complexity Low_complexity 3 171 0 960 203 80 0 chr3 225240471 225240683 -2283895 + L1MC3 LINE L1 6243 6471 -1314 315 0 0 0 chr3 225240686 225240721 -2283857 + (CA)n Simple_repeat Simple_repeat 2 36 0 399 298 17 11 chr3 225240734 225240912 -2283666 + (TA)n Simple_repeat Simple_repeat 2 180 0 346 165 11 99 chr3 225240932 225240953 -2283625 + L1M4 LINE L1 3152 3173 -2973 2027 157 0 16 chr3 225240953 225241265 -2283313 + AluJb SINE Alu 1 307 -5 346 165 11 99 chr3 225241265 225241334 -2283244 + L1M4 LINE L1 3173 3234 -2912 1312 129 88 68 chr3 225241344 225241464 -2283114 + AluJo SINE Alu 15 131 -181 2222 57 0 54 chr3 225241464 225241784 -2282794 - AluY SINE Alu 0 304 1 1312 129 88 68 chr3 225241784 225241925 -2282653 + AluJo SINE Alu 131 282 -30 230 256 14 109 chr3 225241935 225241985 -2282593 + L1M4 LINE L1 3223 3276 -2870 2209 98 3 10 chr3 225241985 225242281 -2282297 + AluSc SINE Alu 1 294 -15 230 256 14 109 chr3 225242281 225242355 -2282223 + L1M4 LINE L1 3276 3355 -2791 1885 138 3 56 chr3 225242355 225242674 -2281904 + AluJb SINE Alu 1 302 -10 230 256 14 109 chr3 225242674 225242841 -2281737 + L1M4 LINE L1 3355 3487 -2659 673 179 49 0 chr3 225242850 225242973 -2281605 + AluJo SINE Alu 10 138 -174 1134 201 101 10 chr3 225242982 225243172 -2281406 + L1M4 LINE L1 3949 4179 -1967 2180 122 6 3 chr3 225243172 225243483 -2281095 + AluSq SINE Alu 1 312 -1 1134 201 101 10 chr3 225243483 225243600 -2280978 + L1M4 LINE L1 4179 4284 -1862 598 209 30 15 chr3 225243583 225243717 -2280861 + L1MC4a LINE L1 6604 6739 -1069 * 225 250 0 0 chr3 225243704 225243752 -2280826 + L1MC3 LINE L1 6719 6766 -1019 * 311 143 16 16 chr3 225243949 225244012 -2280566 + L1MC3 LINE L1 6719 6781 -1004 2216 114 7 0 chr3 225244012 225244310 -2280268 - AluSx SINE Alu -12 300 1 616 191 0 0 chr3 225244310 225244425 -2280153 - AluJb SINE Alu -196 116 2 877 194 26 26 chr3 225244625 225244816 -2279762 - AluJb SINE Alu -121 191 1 469 162 191 9 chr3 225245115 225245220 -2279358 + AluJb SINE Alu 167 290 -22 1265 113 16 16 chr3 225245312 225245498 -2279080 - AluSg/x SINE Alu 0 312 127 378 292 15 36 chr3 225247047 225247184 -2277394 + L1M4 LINE L1 4960 5093 -1053 2256 90 0 43 chr3 225247256 225247579 -2276999 - AluSg SINE Alu -1 309 1 344 137 0 0 chr3 225247606 225247657 -2276921 - Alu SINE Alu -251 52 2 470 344 72 6 chr3 225247658 225247838 -2276740 + L1M4 LINE L1 5080 5271 -875 322 318 46 7 chr3 225247964 225248115 -2276463 + MIR SINE MIR 97 253 -9 1408 169 107 31 chr3 225248465 225248755 -2275823 - AluJb SINE Alu 0 312 1 2352 100 3 7 chr3 225248882 225249192 -2275386 - AluSq SINE Alu -4 309 1 2413 92 0 0 chr3 225249193 225249486 -2275092 - AluSg SINE Alu -12 298 6 2069 110 53 0 chr3 225249765 225250047 -2274531 + AluSx SINE Alu 1 297 -15 207 0 0 0 chr3 225251030 225251053 -2273525 + (A)n Simple_repeat Simple_repeat 1 23 0 640 215 0 0 chr3 225251062 225251192 -2273386 + FLAM_A SINE Alu 1 130 -3 296 131 0 49 chr3 225251454 225251515 -2273063 + Alu SINE Alu 239 296 -4 1340 136 0 10 chr3 225251620 225251826 -2272752 - AluSg/x SINE Alu -7 303 100 339 203 14 0 chr3 225252775 225252844 -2271734 + MER63 DNA MER1_type 681 750 -310 502 205 161 0 chr3 225253327 225253439 -2271139 - FLAM_C SINE Alu 0 133 4 268 250 0 0 chr3 225253440 225253508 -2271070 - L1M4c LINE L1 -5209 1175 1108 2172 96 16 38 chr3 225253522 225253836 -2270742 - AluSx SINE Alu -5 307 1 2209 245 45 9 chr3 225253837 225254481 -2270097 - L1 LINE L1 -1765 4381 3715 2480 75 7 0 chr3 225254487 225254793 -2269785 + AluSg SINE Alu 1 308 -2 1474 241 57 10 chr3 225254793 225255303 -2269275 - L1 LINE L1 -2597 3549 3016 481 253 51 18 chr3 225255348 225255621 -2268957 + L1M4 LINE L1 2172 2453 -3693 1075 113 0 12 chr3 225255710 225255870 -2268708 + AluSc SINE Alu 5 162 -147 306 185 0 15 chr3 225256004 225256069 -2268509 + AluSp/q SINE Alu 240 303 0 300 125 0 107 chr3 225256329 225256385 -2268193 + Alu SINE Alu 241 284 -18 1951 114 3 16 chr3 225256431 225256739 -2267839 + AluSc SINE Alu 1 304 -5 1966 103 17 3 chr3 225256952 225257244 -2267334 - AluSg SINE Alu -14 296 1 196 274 20 0 chr3 225257465 225257516 -2267062 + MIR SINE MIR 98 149 -113 2026 123 0 0 chr3 225257517 225257810 -2266768 + AluSx SINE Alu 1 293 -19 267 265 24 0 chr3 225259406 225259489 -2265089 + (TCCA)n Simple_repeat Simple_repeat 1 85 0 363 268 12 12 chr3 225259516 225259598 -2264980 - L2 LINE L2 -35 3237 3156 281 317 84 14 chr3 225259797 225259939 -2264639 + L2 LINE L2 3116 3267 -5 1481 203 7 3 chr3 225260664 225260964 -2263614 - AluJo SINE Alu -9 303 3 2287 63 7 0 chr3 225261479 225261763 -2262815 + AluY SINE Alu 2 287 -24 1349 175 122 24 chr3 225261892 225262229 -2262349 - LTR48 LTR ERV1 -417 370 1 368 267 104 68 chr3 225262460 225262681 -2261897 - MLT1H LTR MaLR -225 324 96 2096 87 10 3 chr3 225263088 225263463 -2261115 - L1P4 LINE L1 -628 5540 5164 262 311 28 0 chr3 225263573 225263679 -2260899 - HAL1 LINE L1 -1612 895 787 1908 132 0 4 chr3 225264317 225264597 -2259981 + AluSp SINE Alu 19 297 -16 812 147 133 7 chr3 225264597 225264747 -2259831 + AluSp SINE Alu 137 305 -8 1012 140 37 6 chr3 225265512 225265676 -2258902 - AluSg SINE Alu -141 169 1 2170 110 0 0 chr3 225265757 225266049 -2258529 + AluSg SINE Alu 1 292 -18 536 321 32 11 chr3 225266341 225266531 -2258047 + MIR SINE MIR 16 209 -53 1954 121 3 0 chr3 225266582 225266864 -2257714 + AluSx SINE Alu 1 283 -29 25 0 0 0 chr3 225266865 225266890 -2257688 + AT_rich Low_complexity Low_complexity 1 25 0 821 232 11 0 chr3 225266906 225267096 -2257482 + L1PBa LINE L1 6 197 -6666 * 9039 198 36 26 chr3 225267093 225269369 -2255209 + L1PBa LINE L1 1392 3644 -3218 2404 48 0 0 chr3 225269369 225269662 -2254916 + AluY SINE Alu 1 293 -18 9039 198 36 26 chr3 225269662 225269896 -2254682 + L1PBa LINE L1 3644 3874 -2988 2147 125 0 0 chr3 225269896 225270207 -2254371 + AluSq SINE Alu 1 311 -2 9039 198 36 26 chr3 225270207 225271012 -2253566 + L1PBa LINE L1 3874 4728 -2134 2229 113 0 0 chr3 225271012 225271323 -2253255 + AluSx SINE Alu 1 311 -1 1176 136 5 0 chr3 225271337 225271528 -2253050 + L1PB1 LINE L1 5959 6150 -1 2333 66 10 0 chr3 225271556 225271860 -2252718 + AluSp SINE Alu 1 307 -6 1061 140 6 12 chr3 225271893 225272057 -2252521 + FRAM SINE Alu 4 166 0 216 222 0 0 chr3 225272142 225272187 -2252391 - MIR SINE MIR -43 219 175 1679 115 4 0 chr3 225272225 225272459 -2252119 - AluSg SINE Alu -75 235 1 310 149 95 27 chr3 225272460 225272534 -2252044 - MIR SINE MIR -99 163 85 1208 159 75 0 chr3 225272782 225272996 -2251582 + AluJo SINE Alu 2 231 -81 802 216 61 119 chr3 225273064 225273476 -2251102 + MLT1B LTR MaLR 1 388 -2 2020 119 0 22 chr3 225273575 225273887 -2250691 - AluSx SINE Alu -5 307 3 1071 326 103 7 chr3 225273891 225274434 -2250144 + L3 LINE CR1 614 1208 -369 1547 172 79 53 chr3 225274434 225274940 -2249638 + LTR61 LTR ERV1 1 595 0 736 154 0 0 chr3 225275085 225275195 -2249383 - AluSx SINE Alu -7 302 193 976 137 0 0 chr3 225275196 225275342 -2249236 - AluSx SINE Alu -166 146 1 450 260 70 33 chr3 225275371 225275571 -2249007 + MLT1K LTR MaLR 10 249 -339 353 99 0 161 chr3 225275571 225275616 -2248962 - MSTA LTR MaLR 0 428 400 2241 103 3 0 chr3 225275616 225275927 -2248651 + AluSx SINE Alu 1 312 0 353 99 0 161 chr3 225275927 225275962 -2248616 - MSTA LTR MaLR -28 400 361 387 100 0 76 chr3 225275976 225276235 -2248343 + AluSp SINE Alu 1 303 0 * 2410 112 22 6 chr3 225276224 225276590 -2247988 - MSTA LTR MaLR -56 372 1 802 311 52 17 chr3 225276590 225276905 -2247673 + MLT1K LTR MaLR 242 568 -20 2247 94 0 0 chr3 225277013 225277310 -2247268 - AluSx SINE Alu -15 297 1 606 212 334 3 chr3 225277429 225277834 -2246744 + LTR29 LTR ERV1 1 582 -40 1803 134 7 7 chr3 225277860 225278159 -2246419 - AluJo SINE Alu -13 299 1 353 297 14 29 chr3 225278167 225278305 -2246273 - HAL1 LINE L1 -223 2284 2149 1417 109 5 0 chr3 225278306 225278527 -2246051 - AluY SINE Alu -8 303 82 1126 172 5 20 chr3 225278527 225278730 -2245848 + LTR8A LTR ERV1 98 297 -430 * 1893 191 68 57 chr3 225278721 225279234 -2245344 + LTR8A LTR ERV1 209 727 0 810 190 7 0 chr3 225279594 225279731 -2244847 + FRAM SINE Alu 1 137 -39 412 191 67 38 chr3 225279765 225279870 -2244708 - MLT1E LTR MaLR -485 108 1 778 155 0 0 chr3 225279917 225280033 -2244545 + FLAM_C SINE Alu 1 116 -17 250 311 66 53 chr3 225280128 225280279 -2244299 - L2 LINE L2 -177 3095 2943 2295 89 0 0 chr3 225281004 225281308 -2243270 + AluSx SINE Alu 9 312 0 248 295 89 0 chr3 225281455 225281567 -2243011 + MIR3 SINE MIR 82 203 -5 364 171 24 0 chr3 225282639 225282721 -2241857 + CT-rich Low_complexity Low_complexity 1 84 0 1868 127 0 7 chr3 225282721 225282997 -2241581 - AluSx SINE Alu -32 280 7 235 279 15 15 chr3 225283067 225283135 -2241443 + CT-rich Low_complexity Low_complexity 2 69 0 295 179 123 94 chr3 225283248 225283354 -2241224 + MIR SINE MIR 84 192 -70 256 198 58 58 chr3 225283363 225283449 -2241129 - L2 LINE L2 -1 3271 3186 1455 142 68 39 chr3 225283593 225283874 -2240704 - AluJb SINE Alu -13 289 1 2219 101 0 3 chr3 225283887 225284193 -2240385 - AluSq SINE Alu -6 307 3 2177 110 0 0 chr3 225284765 225285074 -2239504 + AluSx SINE Alu 1 309 -3 1307 180 18 93 chr3 225285150 225285484 -2239094 + AluJb SINE Alu 1 309 -3 427 282 16 78 chr3 225285530 225285785 -2238793 - L2 LINE L2 -56 3257 3019 587 240 69 75 chr3 225285796 225286158 -2238420 - L1MC5 LINE L1 -50 7911 7552 439 211 53 0 chr3 225286171 225286285 -2238293 + FRAM SINE Alu 44 163 -13 276 120 0 0 chr3 225286332 225286382 -2238196 + L1ME4a LINE L1 6060 6109 -12 797 163 0 8 chr3 225286490 225286613 -2237965 + AluJo/FLAM SINE Alu 2 123 -189 1106 139 0 0 chr3 225286615 225286781 -2237797 - AluSq SINE Alu -14 299 134 1773 140 7 0 chr3 225286781 225287074 -2237504 - AluSg SINE Alu -15 295 1 197 295 33 16 chr3 225287455 225287516 -2237062 + MIR SINE MIR 89 150 -112 1996 124 0 7 chr3 225287684 225287983 -2236595 - AluSq SINE Alu -16 297 1 180 196 107 18 chr3 225288060 225288116 -2236462 + L2 LINE L2 2578 2638 -676 841 174 0 0 chr3 225288116 225288260 -2236318 + FRAM SINE Alu 18 161 -15 1148 86 7 0 chr3 225289199 225289351 -2235227 - AluSq SINE Alu -160 153 1 974 201 84 5 chr3 225289351 225289565 -2235013 - L1MC3 LINE L1 -1674 6111 5881 1559 177 27 7 chr3 225289565 225289864 -2234714 + AluJb SINE Alu 1 305 -7 356 128 0 0 chr3 225290213 225290260 -2234318 - LTR29 LTR ERV1 0 622 576 2072 101 0 0 chr3 225290271 225290549 -2234029 + AluSq SINE Alu 6 283 -30 2204 87 0 20 chr3 225290723 225291022 -2233556 - AluSg SINE Alu -16 294 2 209 208 0 19 chr3 225292336 225292389 -2232189 + CT-rich Low_complexity Low_complexity 3 54 0 1010 104 0 0 chr3 225293595 225293730 -2230848 + AluSq/x SINE Alu 1 135 -177 2042 120 7 0 chr3 225293730 225294029 -2230549 + AluSx SINE Alu 1 301 -11 217 262 131 12 chr3 225294205 225294289 -2230289 - L2 LINE L2 -217 3055 2962 1936 102 10 23 chr3 225294500 225294804 -2229774 - AluSp SINE Alu -13 300 1 1914 104 7 0 chr3 225295083 225295353 -2229225 + AluSq SINE Alu 26 297 -16 2248 83 3 13 chr3 225295445 225295757 -2228821 - AluSg SINE Alu -1 309 1 197 295 33 16 chr3 225296138 225296199 -2228379 + MIR SINE MIR 89 150 -112 2238 88 0 0 chr3 225296367 225296663 -2227915 - AluSq SINE Alu -16 297 2 800 167 0 0 chr3 225296694 225296820 -2227758 + FLAM_C SINE Alu 12 137 -6 2194 86 0 26 chr3 225297374 225297676 -2226902 + AluSx SINE Alu 2 295 -17 693 143 63 16 chr3 225297691 225297817 -2226761 + FLAM_C SINE Alu 1 132 -1 189 0 0 0 chr3 225297948 225297969 -2226609 + (TTTA)n Simple_repeat Simple_repeat 2 22 0 1623 142 7 61 chr3 225297972 225298282 -2226296 - AluSx SINE Alu -19 293 1 180 196 107 18 chr3 225298359 225298415 -2226163 + L2 LINE L2 2578 2638 -676 876 154 0 0 chr3 225298415 225298558 -2226020 + FRAM SINE Alu 18 160 -16 1048 154 0 0 chr3 225299055 225299224 -2225354 - AluSg/x SINE Alu -9 300 132 2227 80 0 0 chr3 225299224 225299510 -2225068 - AluSg SINE Alu -13 297 12 797 203 115 11 chr3 225300682 225300864 -2223714 - AluJb SINE Alu -30 282 82 1437 145 7 93 chr3 225300875 225301208 -2223370 - AluSx SINE Alu 0 306 1 32 26 0 0 chr3 225301208 225301247 -2223331 + AT_rich Low_complexity Low_complexity 1 39 0 417 115 0 0 chr3 225301252 225301313 -2223265 - U7 snRNA snRNA -2 61 1 1887 100 74 0 chr3 225302220 225302490 -2222088 - AluSx SINE Alu -22 290 1 367 255 240 41 chr3 225302896 225303092 -2221486 + L2 LINE L2 3079 3313 0 1265 173 122 36 chr3 225303167 225303317 -2221261 - AluSx SINE Alu 0 302 166 347 0 23 0 chr3 225303317 225303360 -2221218 + (TTA)n Simple_repeat Simple_repeat 2 45 0 1265 173 122 36 chr3 225303360 225303487 -2221091 - AluSx SINE Alu -136 166 1 2050 88 42 0 chr3 225303582 225303866 -2220712 + AluSq SINE Alu 1 296 -17 492 185 185 8 chr3 225305033 225305152 -2219426 + AluJb SINE Alu 149 288 -24 2230 103 13 10 chr3 225305179 225305489 -2219089 - AluSq SINE Alu -2 311 1 618 101 10 0 chr3 225305490 225305589 -2218989 - AluSp/q SINE Alu 0 313 214 2202 112 10 0 chr3 225305496 225305800 -2218778 - AluSq SINE Alu -6 307 1 262 310 170 10 chr3 225306846 225307046 -2217532 - L3 LINE CR1 -72 1505 1274 929 155 45 0 chr3 225307665 225307820 -2216758 - AluSg/x SINE Alu -15 297 136 287 64 0 21 chr3 225308093 225308140 -2216438 + (TTTTG)n Simple_repeat Simple_repeat 1 46 0 2075 90 4 0 chr3 225308153 225308419 -2216159 - AluSg SINE Alu -43 267 1 22 0 0 0 chr3 225308693 225308715 -2215863 + GC_rich Low_complexity Low_complexity 1 22 0 2280 86 7 20 chr3 225308846 225309150 -2215428 - AluSp SINE Alu -13 300 1 412 234 102 22 chr3 225309249 225309386 -2215192 - MER58B DNA MER1_type 0 341 194 1933 97 54 14 chr3 225310199 225310477 -2214101 - AluSq SINE Alu -24 289 1 30 27 0 0 chr3 225310745 225310782 -2213796 + AT_rich Low_complexity Low_complexity 1 37 0 2026 115 43 4 chr3 225311587 225311865 -2212713 - AluSq SINE Alu -24 289 1 1244 177 185 4 chr3 225311893 225312142 -2212436 - AluJb SINE Alu -8 294 1 361 200 158 17 chr3 225312213 225312333 -2212245 + MER5A DNA MER1_type 3 139 -50 2409 70 7 0 chr3 225312336 225312635 -2211943 + AluSx SINE Alu 1 301 -11 245 146 42 0 chr3 225312736 225312784 -2211794 + MER5A DNA MER1_type 137 186 -3 555 160 0 10 chr3 225313197 225313297 -2211281 + L1MC1 LINE L1 6214 6312 -21 2532 62 0 7 chr3 225313297 225313606 -2210972 - AluY SINE Alu -4 307 1 1295 27 0 0 chr3 225314343 225314532 -2210046 + L1PA2 LINE L1 5991 6179 0 2098 99 0 38 chr3 225314772 225315087 -2209491 - AluSc SINE Alu 0 304 1 858 161 0 0 chr3 225315106 225315236 -2209342 - FLAM_C SINE Alu -3 130 1 2137 149 67 44 chr3 225315844 225316279 -2208299 - MER65A LTR ERV1 0 445 1 676 172 99 13 chr3 225316308 225316459 -2208119 - FRAM SINE Alu -2 174 11 1722 182 35 22 chr3 225316578 225316985 -2207593 - LTR2B LTR ERV1 0 490 30 1677 116 10 82 chr3 225317008 225317311 -2207267 + AluSg SINE Alu 11 291 -19 2083 127 10 7 chr3 225317440 225317739 -2206839 + AluSx SINE Alu 1 300 -12 1164 236 36 4 chr3 225317813 225318088 -2206490 + AluJo SINE Alu 1 284 -18 456 134 0 0 chr3 225318088 225318155 -2206423 + AluJ/FRAM SINE Alu 218 284 -28 363 164 33 0 chr3 225318155 225318216 -2206362 + AluJ/FRAM SINE Alu 218 280 -22 466 155 0 0 chr3 225318216 225318287 -2206291 + AluJ/FRAM SINE Alu 214 284 -28 413 164 60 0 chr3 225318283 225318350 -2206228 + AluJ/FRAM SINE Alu 214 284 -28 * 343 197 33 0 chr3 225318350 225318411 -2206167 + AluJ/FRAM SINE Alu 218 280 -22 420 174 29 0 chr3 225318411 225318480 -2206098 + AluJ/FRAM SINE Alu 214 284 -28 462 198 160 0 chr3 225319484 225319590 -2204988 + FLAM_A SINE Alu 1 123 -10 1250 134 0 20 chr3 225319704 225319906 -2204672 - AluSg/x SINE Alu 0 310 113 2070 92 4 4 chr3 225319906 225320187 -2204391 - AluSq SINE Alu -31 282 2 2184 118 0 3 chr3 225321014 225321310 -2203268 - AluSq SINE Alu -18 295 1 2409 98 0 0 chr3 225321400 225321697 -2202881 + AluSp SINE Alu 1 297 -16 889 128 134 7 chr3 225321697 225321846 -2202732 + AluSp SINE Alu 137 304 -9 2495 192 110 27 chr3 225324864 225325520 -2199058 - L1MC1 LINE L1 0 6333 5624 1649 119 43 0 chr3 225325530 225325765 -2198813 - AluSq SINE Alu -68 245 1 2043 126 7 0 chr3 225325820 225326106 -2198472 - AluSx SINE Alu -16 296 9 2258 108 7 0 chr3 225326120 225326417 -2198161 - AluSx SINE Alu -13 299 1 635 191 0 0 chr3 225326417 225326532 -2198046 - AluJb SINE Alu -196 116 2 278 174 29 0 chr3 225326534 225326603 -2197975 + L1MC3 LINE L1 7715 7785 0 23 33 0 0 chr3 225326834 225326864 -2197714 + AT_rich Low_complexity Low_complexity 1 30 0 1689 159 14 4 chr3 225326864 225327140 -2197438 - AluJb SINE Alu -25 287 9 779 178 22 0 chr3 225327144 225327279 -2197299 - AluJo SINE Alu -173 139 2 2051 121 37 0 chr3 225327280 225327456 -2197122 - AluSg SINE Alu -2 308 115 216 0 0 0 chr3 225327456 225327480 -2197098 + (TG)n Simple_repeat Simple_repeat 2 25 0 2051 121 37 0 chr3 225327480 225327600 -2196978 - AluSg SINE Alu -195 115 1 794 196 54 24 chr3 225327604 225327793 -2196785 - AluJ SINE Alu 0 303 110 810 145 0 0 chr3 225327875 225327992 -2196586 - AluJ SINE Alu -195 117 1 2535 53 0 10 chr3 225328052 225328355 -2196223 - AluY SINE Alu -8 303 4 2098 128 0 47 chr3 225329140 225329322 -2195256 - AluSx SINE Alu -8 304 142 2260 97 10 3 chr3 225329322 225329620 -2194958 - AluSg SINE Alu -10 300 1 2098 128 0 47 chr3 225329620 225329756 -2194822 - AluSx SINE Alu -170 142 1 385 223 182 34 chr3 225330317 225330465 -2194113 + MER5A DNA MER1_type 9 178 -11 2274 95 0 0 chr3 225330486 225330769 -2193809 + AluSq SINE Alu 1 283 -30 202 0 29 57 chr3 225330781 225330816 -2193762 + (TAAA)n Simple_repeat Simple_repeat 2 35 0 725 199 7 15 chr3 225330838 225330974 -2193604 - FRAM SINE Alu -25 151 17 2314 91 17 0 chr3 225331018 225331315 -2193263 + AluSg SINE Alu 1 302 -8 793 153 0 36 chr3 225331425 225331562 -2193016 + AluJo/FLAM SINE Alu 2 133 -169 1563 175 74 3 chr3 225331564 225331849 -2192729 + AluJo SINE Alu 1 305 -7 518 220 0 10 chr3 225332027 225332127 -2192451 - FLAM_A SINE Alu -43 99 1 854 115 0 90 chr3 225332416 225332572 -2192006 + FLAM_C SINE Alu 1 142 -1 366 364 43 11 chr3 225332598 225332782 -2191796 + MIR SINE MIR 63 252 -10 761 188 0 0 chr3 225333325 225333458 -2191120 + FLAM_C SINE Alu 1 133 0 1081 143 21 80 chr3 225333515 225333752 -2190826 - AluJb SINE Alu 0 312 90 2224 93 10 0 chr3 225333963 225334253 -2190325 + AluSg SINE Alu 1 293 -17 1236 118 11 0 chr3 225334253 225334431 -2190147 + AluSp SINE Alu 134 313 0 421 261 39 120 chr3 225334654 225334938 -2189640 + MIR SINE MIR 2 262 0 2115 86 62 3 chr3 225335339 225335629 -2188949 + AluSq SINE Alu 1 307 -6 181 301 80 0 chr3 225335646 225335759 -2188819 + L3 LINE CR1 1137 1258 -319 839 119 0 32 chr3 225335777 225335903 -2188675 + FLAM_C SINE Alu 5 126 -17 213 309 86 63 chr3 225335922 225335969 -2188609 + L3 LINE CR1 1326 1370 -207 2172 113 14 0 chr3 225335969 225336262 -2188316 - AluSx SINE Alu -15 297 1 213 309 86 63 chr3 225336262 225336389 -2188189 + L3 LINE CR1 1370 1504 -73 211 255 0 0 chr3 225336396 225336447 -2188131 - L2 LINE L2 -4 3268 3218 2200 122 0 0 chr3 225336612 225336930 -2187648 + AluSx SINE Alu 1 318 0 879 83 8 8 chr3 225337448 225337568 -2187010 + FLAM_C SINE Alu 1 120 -23 21 57 0 0 chr3 225337568 225337603 -2186975 + AT_rich Low_complexity Low_complexity 1 35 0 2255 96 7 3 chr3 225337612 225337903 -2186675 + AluSg SINE Alu 3 294 -16 201 94 0 0 chr3 225337954 225337986 -2186592 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 399 257 162 7 chr3 225338162 225338310 -2186268 - MER112 DNA MER1_type 0 260 90 256 356 0 0 chr3 225338324 225338411 -2186167 + (CA)n Simple_repeat Simple_repeat 2 88 0 1374 160 122 8 chr3 225338595 225338857 -2185721 - AluSx SINE Alu -19 293 2 1276 190 119 4 chr3 225338866 225339151 -2185427 - AluJb SINE Alu 0 315 2 549 152 0 0 chr3 225339159 225339251 -2185327 - AluJ/FRAM SINE Alu -5 307 216 476 157 12 0 chr3 225339269 225339352 -2185226 - AluJ/FRAM SINE Alu -11 301 218 1687 139 14 28 chr3 225339373 225339692 -2184886 - AluJo SINE Alu 0 315 1 2141 81 0 0 chr3 225339910 225340181 -2184397 + AluSg SINE Alu 1 271 -39 2067 135 7 0 chr3 225340475 225340771 -2183807 - AluSx SINE Alu -14 298 1 1395 125 0 36 chr3 225341244 225341468 -2183110 - AluSg/x SINE Alu -19 291 76 2480 96 0 0 chr3 225341879 225342192 -2182386 - AluSq SINE Alu 0 313 1 1651 162 20 26 chr3 225342324 225342626 -2181952 - AluJb SINE Alu -12 300 1 1068 242 180 21 chr3 225342898 225343460 -2181118 + L1ME3A LINE L1 2180 2804 -3411 1747 162 162 8 chr3 225343460 225343831 -2180747 + MSTA LTR MaLR 1 428 0 1068 242 180 21 chr3 225343831 225343855 -2180723 + L1ME3A LINE L1 2804 2823 -3392 1991 68 11 8 chr3 225343981 225344246 -2180332 - AluSx SINE Alu -46 266 1 805 160 15 0 chr3 225344574 225344705 -2179873 - FLAM_A SINE Alu 0 133 1 324 310 35 9 chr3 225344709 225344825 -2179753 + L1ME3A LINE L1 3423 3541 -2674 2090 128 26 0 chr3 225344932 225345236 -2179342 - AluSx SINE Alu 0 312 1 2026 130 0 3 chr3 225345498 225345782 -2178796 + AluSq SINE Alu 2 284 -29 814 188 133 4 chr3 225345790 225346024 -2178554 + L1ME3A LINE L1 3652 3915 -2300 * 865 221 25 20 chr3 225346004 225346282 -2178296 + L1ME3A LINE L1 5666 5941 -298 431 242 32 16 chr3 225346338 225346462 -2178116 + L1M4c LINE L1 296 421 -6225 569 152 83 83 chr3 225346499 225346644 -2177934 + L1M4c LINE L1 491 635 -6011 3963 209 94 80 chr3 225346651 225347158 -2177420 + L1M4c LINE L1 859 1357 -5289 1946 164 3 10 chr3 225347158 225347463 -2177115 + AluJb SINE Alu 5 307 -5 3963 209 94 80 chr3 225347463 225347546 -2177032 + L1M4c LINE L1 1357 1437 -5209 1161 210 71 50 chr3 225347546 225347827 -2176751 + AluJo SINE Alu 4 290 -12 3963 209 94 80 chr3 225347827 225348761 -2175817 + L1M4c LINE L1 1437 2426 -4220 2042 121 4 0 chr3 225348761 225349087 -2175491 + AluSx SINE Alu 1 327 0 3963 209 94 80 chr3 225349087 225349373 -2175205 + L1M4c LINE L1 2426 2706 -3940 26 30 0 0 chr3 225349649 225349682 -2174896 + AT_rich Low_complexity Low_complexity 1 33 0 25 0 0 0 chr3 225349857 225349882 -2174696 + AT_rich Low_complexity Low_complexity 1 25 0 1823 133 7 4 chr3 225350051 225350322 -2174256 + AluSx SINE Alu 15 286 -26 903 207 74 36 chr3 225350360 225350841 -2173737 + L1M4c LINE L1 2143 2649 -3733 962 203 20 36 chr3 225350868 225351001 -2173577 + L1M4c LINE L1 2970 3104 -3278 2358 95 7 0 chr3 225351001 225351295 -2173283 - AluSg SINE Alu -14 296 1 962 203 20 36 chr3 225351295 225351466 -2173112 + L1M4c LINE L1 3104 3269 -3113 2353 78 3 3 chr3 225351536 225351832 -2172746 - AluY SINE Alu -12 299 4 298 278 74 0 chr3 225351857 225351965 -2172613 + MIR SINE MIR 146 261 -1 769 165 16 0 chr3 225351984 225352111 -2172467 - FLAM_C SINE Alu -2 131 3 377 186 81 93 chr3 225352173 225352334 -2172244 + LTR16A LTR ERVL 223 381 -69 1922 143 4 4 chr3 225352370 225352650 -2171928 - AluSq SINE Alu -33 280 1 273 222 56 0 chr3 225352650 225352722 -2171856 + LTR16A LTR ERVL 369 444 -6 495 190 0 65 chr3 225352914 225353098 -2171480 + AluY SINE Alu 2 173 -138 902 209 19 39 chr3 225353280 225353538 -2171040 + L1 LINE L1 4398 4650 -1496 1833 143 0 14 chr3 225353539 225353832 -2170746 + AluJb SINE Alu 1 289 -23 189 121 0 0 chr3 225353838 225353871 -2170707 + (TAAA)n Simple_repeat Simple_repeat 1 33 0 1456 55 6 0 chr3 225354007 225354188 -2170390 - AluY SINE Alu -13 298 117 2052 140 19 0 chr3 225354204 225354525 -2170053 + L1MB4 LINE L1 5852 6178 -2 1598 199 43 5 chr3 225354531 225354881 -2169697 + L1MB7 LINE L1 5811 6164 0 2451 73 3 0 chr3 225354927 225355229 -2169349 - AluSg SINE Alu -7 303 1 21 0 0 0 chr3 225355233 225355254 -2169324 + AT_rich Low_complexity Low_complexity 1 21 0 1930 155 3 3 chr3 225355265 225355556 -2169022 - AluJb SINE Alu -21 291 1 725 226 79 24 chr3 225355605 225355857 -2168721 + L1M4 LINE L1 3839 4104 -2042 1819 145 29 23 chr3 225355861 225356171 -2168407 - AluJo SINE Alu 0 312 1 10955 150 24 36 chr3 225356188 225356551 -2168027 - L1MA3 LINE L1 -106 6199 5833 2281 92 3 3 chr3 225356551 225356865 -2167713 - AluSq SINE Alu 0 313 1 10955 150 24 36 chr3 225356865 225357615 -2166963 - L1MA3 LINE L1 -472 5833 5075 2002 119 0 0 chr3 225357615 225357876 -2166702 + AluSx SINE Alu 23 283 -29 10955 150 24 36 chr3 225357876 225357940 -2166638 - L1MA3 LINE L1 -1230 5075 5012 216 0 0 0 chr3 225357940 225357964 -2166614 + (TTTTG)n Simple_repeat Simple_repeat 2 25 0 10955 150 24 36 chr3 225357964 225359937 -2164641 - L1MA3 LINE L1 -1293 5012 3089 2352 109 0 3 chr3 225359937 225360250 -2164328 - AluSx SINE Alu 0 312 1 10955 150 24 36 chr3 225360250 225360306 -2164272 - L1MA3 LINE L1 -3216 3089 3034 1193 143 0 0 chr3 225360306 225360481 -2164097 - AluSg/x SINE Alu -4 306 132 2279 104 0 28 chr3 225360481 225360799 -2163779 - AluSg SINE Alu -1 309 1 1319 129 241 0 chr3 225361037 225361261 -2163317 + AluSx SINE Alu 17 294 -18 342 115 0 0 chr3 225361261 225361313 -2163265 + (TA)n Simple_repeat Simple_repeat 2 53 0 348 270 59 59 chr3 225361432 225361584 -2162994 - HAL1 LINE L1 -1605 902 751 447 229 0 0 chr3 225364463 225364581 -2159997 + (TG)n Simple_repeat Simple_repeat 2 119 0 33 0 0 0 chr3 225365347 225365380 -2159198 + AT_rich Low_complexity Low_complexity 1 33 0 188 279 25 38 chr3 225365465 225365544 -2159034 - MIR3 SINE MIR -47 161 84 1848 182 62 53 chr3 225366229 225366753 -2157825 - L1MC4 LINE L1 -193 6151 5633 7697 70 14 19 chr3 225366753 225367765 -2156813 - LTR13 LTR ERVK 0 1007 1 1848 182 62 53 chr3 225367765 225368643 -2155935 - L1MC4 LINE L1 -711 5633 4791 203 321 114 15 chr3 225369799 225369930 -2154648 - MIR SINE MIR -83 179 36 6945 63 7 0 chr3 225371011 225372306 -2152272 - L1PA7 LINE L1 -1 6153 4854 779 257 68 7 chr3 225372381 225372673 -2151905 + L1ME1 LINE L1 5622 5931 -235 705 24 0 0 chr3 225372673 225372756 -2151822 + (TTTC)n Simple_repeat Simple_repeat 2 84 0 1251 171 120 35 chr3 225372756 225373014 -2151564 - AluJb SINE Alu -32 280 1 654 223 112 9 chr3 225373014 225373238 -2151340 + L1ME1 LINE L1 5919 6165 -1 346 306 39 33 chr3 225373687 225373867 -2150711 - MLT1K LTR MaLR -9 579 399 346 306 120 27 chr3 225374417 225374600 -2149978 + HAL1 LINE L1 155 354 -2153 536 317 119 11 chr3 225374639 225375018 -2149560 + HAL1 LINE L1 255 674 -1833 209 234 47 18 chr3 225375408 225375579 -2148999 + (CACAC)n Simple_repeat Simple_repeat 3 178 0 425 248 0 9 chr3 225376572 225376709 -2147869 + MLT1C LTR MaLR 250 500 -5 3770 271 64 43 chr3 225376859 225378885 -2145693 - L1ME LINE L1 -1056 5024 2956 584 275 39 18 chr3 225378916 225379200 -2145378 - L1ME LINE L1 -3615 2465 2176 933 277 33 44 chr3 225379405 225379925 -2144653 - L1ME LINE L1 -5067 1016 507 525 184 28 18 chr3 225381803 225381912 -2142666 - MLT1C LTR MaLR 0 467 358 1337 93 0 0 chr3 225381913 225382085 -2142493 + AluSg/x SINE Alu 136 307 -5 1862 161 27 0 chr3 225382116 225382535 -2142043 + AluJb SINE Alu 1 427 0 201 343 29 39 chr3 225383341 225383443 -2141135 - L2 LINE L2 -58 3255 3155 250 149 0 0 chr3 225383523 225383570 -2141008 - MADE1 DNA Mariner -33 47 1 202 362 49 45 chr3 225383664 225383888 -2140690 - L2 LINE L2 -199 3073 2849 336 268 55 15 chr3 225383896 225384119 -2140459 - L2 LINE L2 -339 2974 2740 226 162 0 0 chr3 225389944 225389981 -2134597 - MLT2D LTR ERVL -128 286 250 294 29 0 0 chr3 225391600 225391635 -2132943 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 207 114 0 0 chr3 225392416 225392451 -2132127 + (TTC)n Simple_repeat Simple_repeat 3 37 0 406 332 132 9 chr3 225394357 225394577 -2130001 - L1ME3A LINE L1 -274 5896 5650 272 267 157 32 chr3 225394696 225394913 -2129665 - L1ME3A LINE L1 -625 5539 5296 2013 125 0 11 chr3 225394944 225395224 -2129354 - AluSx SINE Alu -25 287 11 7323 73 4 13 chr3 225395224 225396222 -2128356 + LTR13 LTR ERVK 19 1007 0 226 162 0 0 chr3 225401182 225401219 -2123359 - MLT2D LTR ERVL -128 286 250 294 29 0 0 chr3 225404203 225404238 -2120340 + (GAAA)n Simple_repeat Simple_repeat 2 36 0 207 114 0 0 chr3 225405019 225405054 -2119524 + (TTC)n Simple_repeat Simple_repeat 3 37 0 617 172 0 0 chr3 225406828 225406927 -2117651 - FLAM_C SINE Alu -40 103 5 219 292 88 9 chr3 225406945 225407058 -2117520 - L3 LINE CR1 -319 1258 1137 2358 73 9 22 chr3 225407064 225407381 -2117197 - AluSq SINE Alu 0 313 1 826 160 15 0 chr3 225407709 225407840 -2116738 - FLAM_A SINE Alu 0 133 1 304 310 35 9 chr3 225407844 225407960 -2116618 + L1M4 LINE L1 3354 3472 -2674 1973 131 23 7 chr3 225408067 225408372 -2116206 - AluSg SINE Alu 0 310 1 1440 188 37 72 chr3 225408392 225408496 -2116082 - L1ME3A LINE L1 -1037 5109 5003 2856 10 0 0 chr3 225408496 225408800 -2115778 - AluY SINE Alu -7 304 1 1440 188 37 72 chr3 225408800 225409015 -2115563 - L1ME3A LINE L1 -1143 5003 4782 2053 130 10 10 chr3 225409015 225409322 -2115256 - AluSx SINE Alu -5 307 1 1440 188 37 72 chr3 225409322 225409367 -2115211 - L1ME3A LINE L1 -1364 4782 4759 8499 53 1 1 chr3 225409367 225410336 -2114242 - LTR5 LTR ERVK 0 969 1 1440 188 37 72 chr3 225410336 225410400 -2114178 - L1ME3A LINE L1 -1387 4759 4694 719 249 18 6 chr3 225410452 225410617 -2113961 - U2 snRNA snRNA -17 171 5 185 83 0 0 chr3 225410632 225410656 -2113922 + (A)n Simple_repeat Simple_repeat 1 24 0 23 40 0 0 chr3 225410805 225410830 -2113748 + AT_rich Low_complexity Low_complexity 1 25 0 237 167 56 0 chr3 225411010 225411064 -2113514 - AluSg/x SINE Alu -126 174 118 655 150 173 0 chr3 225411106 225411239 -2113339 - FRAM SINE Alu -28 148 1 2087 70 3 60 chr3 225411249 225411580 -2112998 + AluY SINE Alu 1 314 0 392 235 84 0 chr3 225411656 225411775 -2112803 - MIR3 SINE MIR -18 190 62 1742 157 27 20 chr3 225412316 225412609 -2111969 + AluJo SINE Alu 1 295 -17 1804 132 53 0 chr3 225412609 225412875 -2111703 + AluJb SINE Alu 1 280 -32 705 24 0 0 chr3 225412875 225412958 -2111620 + (GAAA)n Simple_repeat Simple_repeat 2 84 0 779 257 68 7 chr3 225412958 225413250 -2111328 - L1ME1 LINE L1 -235 5931 5622 3943 84 10 12 chr3 225413325 225414137 -2110441 + L1P3 LINE L1 4854 5655 -499 441 267 0 27 chr3 225414788 225415084 -2109494 + G-rich Low_complexity Low_complexity 1 287 0 1502 146 48 3 chr3 225415504 225415799 -2108779 + AluJb SINE Alu 1 308 -4 2178 102 3 7 chr3 225415806 225416100 -2108478 + AluSx SINE Alu 1 293 -19 803 214 73 70 chr3 225416100 225416234 -2108344 - L1ME1 LINE L1 -1467 4679 4547 1743 190 48 11 chr3 225416234 225416586 -2107992 + MLT1A1 LTR MaLR 1 365 0 803 214 73 70 chr3 225416586 225416792 -2107786 - L1ME1 LINE L1 -1599 4547 4338 1732 149 3 14 chr3 225416911 225417199 -2107379 - AluJb SINE Alu -27 285 1 925 202 20 32 chr3 225417200 225417447 -2107131 - L1 LINE L1 -1496 4650 4407 2240 93 10 16 chr3 225417450 225417763 -2106815 - AluSx SINE Alu -1 311 1 1587 147 14 31 chr3 225417981 225418267 -2106311 + AluJo SINE Alu 1 281 -31 249 259 207 0 chr3 225418663 225418798 -2105780 - LTR16C LTR ERVL -250 241 79 338 314 171 58 chr3 225418935 225419145 -2105433 + L1MC4a LINE L1 6302 6487 -1321 1983 112 8 0 chr3 225419145 225419412 -2105166 + AluSq SINE Alu 29 297 -16 338 314 171 58 chr3 225419412 225419564 -2105014 + L1MC4a LINE L1 6487 6705 -1103 489 263 50 10 chr3 225419614 225419812 -2104766 + L1MC5 LINE L1 6960 7165 -796 1635 109 14 5 chr3 225419817 225420038 -2104540 + AluSq SINE Alu 86 308 -5 220 154 423 0 chr3 225420063 225420141 -2104437 - MER5A DNA MER1_type -2 187 77 6268 76 19 26 chr3 225421294 225422212 -2102366 - LTR13 LTR ERVK -96 911 1 2250 172 97 2 chr3 225422215 225422777 -2101801 - L1MC/D LINE L1 -640 5704 5104 1974 170 34 5 chr3 225423102 225423463 -2101115 + L1 LINE L1 4675 5051 -1095 216 0 0 0 chr3 225423463 225423487 -2101091 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 1974 170 34 5 chr3 225423487 225423536 -2101042 + L1 LINE L1 5051 5097 -1049 2142 120 0 0 chr3 225423551 225423834 -2100744 - AluSx SINE Alu -29 283 1 429 233 173 40 chr3 225423855 225424005 -2100573 - MER5A DNA MER1_type -11 178 9 447 229 0 0 chr3 225424387 225424505 -2100073 + (CA)n Simple_repeat Simple_repeat 2 119 0 447 229 0 0 chr3 225424914 225425032 -2099546 + (TG)n Simple_repeat Simple_repeat 2 119 0 468 206 137 0 chr3 225426475 225426577 -2098001 - FLAM_C SINE Alu -16 117 2 235 135 0 0 chr3 225427453 225427490 -2097088 - MER1B DNA MER1_type -168 129 133 235 135 0 0 chr3 225427515 225427552 -2097026 - MER1B DNA MER1_type -168 129 133 235 135 0 0 chr3 225427547 225427584 -2096994 - MER1B DNA MER1_type -168 129 133 235 135 0 0 chr3 225427579 225427616 -2096962 - MER1B DNA MER1_type -168 129 133 235 135 0 0 chr3 225427673 225427710 -2096868 - MER1B DNA MER1_type -168 129 133 235 135 0 0 chr3 225427858 225427895 -2096683 - MER1B DNA MER1_type -168 129 133 699 193 15 2 chr3 225428046 225428202 -2096376 - MER1B DNA MER1_type -168 129 4 1588 154 91 25 chr3 225428304 225428589 -2095989 + AluJo SINE Alu 1 304 -8 985 156 21 84 chr3 225429337 225429575 -2095003 - AluJb SINE Alu 0 312 90 2330 112 0 0 chr3 225429786 225430090 -2094488 + AluSq SINE Alu 1 304 -9 796 105 0 0 chr3 225430614 225430719 -2093859 - AluSg/x SINE Alu -139 173 69 1397 144 5 0 chr3 225430720 225430921 -2093657 - AluSp SINE Alu -111 202 1 21 36 0 0 chr3 225432075 225432103 -2092475 + GC_rich Low_complexity Low_complexity 1 28 0 353 265 55 11 chr3 225433444 225433657 -2090921 + L2 LINE L2 2748 2974 -339 4126 55 2 24 chr3 225433870 225434452 -2090126 - L1PA7 LINE L1 -77 6077 5509 415 224 70 50 chr3 225434682 225434923 -2089655 - L1PA7 LINE L1 -781 5365 5120 2195 101 0 21 chr3 225436243 225436531 -2088047 - AluSg SINE Alu -27 283 2 284 243 9 37 chr3 225438442 225438549 -2086029 - L1M LINE L1 -763 5399 5296 1745 99 5 0 chr3 225438580 225438802 -2085776 - AluSg/x SINE Alu -25 287 65 6121 120 26 108 chr3 225438803 225439698 -2084880 - L1M1 LINE L1 -4670 2895 1928 1959 164 0 0 chr3 225439698 225439990 -2084588 - AluJb SINE Alu -10 302 11 6121 120 26 108 chr3 225439990 225440091 -2084487 - L1M1 LINE L1 -5637 1928 1820 2339 94 10 0 chr3 225440091 225440389 -2084189 - AluSp SINE Alu -12 301 1 6121 120 26 108 chr3 225440389 225440705 -2083873 - L1M1 LINE L1 -5745 1820 1690 1008 231 6 28 chr3 225440705 225441062 -2083516 - LTR2 LTR ERV1 0 449 1 2148 234 18 37 chr3 225441062 225441605 -2082973 - L1M1 LINE L1 -5872 1693 1161 823 281 43 25 chr3 225442546 225443109 -2081469 + L1MC/D LINE L1 4978 5549 -743 1532 87 0 10 chr3 225443234 225443430 -2081148 + AluSg/x SINE Alu 105 298 -14 475 208 23 0 chr3 225443433 225443563 -2081015 - L1M4 LINE L1 -3280 3102 2970 872 210 72 35 chr3 225443590 225444068 -2080510 - L1M4 LINE L1 -3733 2649 2146 2144 105 4 4 chr3 225444068 225444391 -2080187 - AluSg SINE Alu 0 325 3 21 57 0 0 chr3 225444400 225444435 -2080143 + AT_rich Low_complexity Low_complexity 1 35 0 878 83 8 8 chr3 225444435 225444555 -2080023 - FLAM_C SINE Alu -23 120 1 197 33 33 0 chr3 225445073 225445103 -2079475 + (TTTG)n Simple_repeat Simple_repeat 2 32 0 2136 122 3 3 chr3 225445105 225445391 -2079187 - AluSx SINE Alu -26 286 1 230 235 0 0 chr3 225445556 225445607 -2078971 + L2 LINE L2 3259 3309 -4 266 320 90 16 chr3 225445614 225445736 -2078842 - L3 LINE CR1 -73 1504 1374 2208 120 13 0 chr3 225445741 225446049 -2078529 + AluSx SINE Alu 1 312 0 10793 153 24 32 chr3 225446049 225448023 -2076555 + L1MA3 LINE L1 3076 5064 -1241 216 0 0 0 chr3 225448023 225448047 -2076531 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 10793 153 24 32 chr3 225448047 225448111 -2076467 + L1MA3 LINE L1 5064 5127 -1178 1948 126 0 0 chr3 225448111 225448372 -2076206 - AluSx SINE Alu -29 283 23 10793 153 24 32 chr3 225448372 225449121 -2075457 + L1MA3 LINE L1 5127 5835 -470 2281 92 3 3 chr3 225449121 225449435 -2075143 + AluSq SINE Alu 1 313 0 10793 153 24 32 chr3 225449435 225449798 -2074780 + L1MA3 LINE L1 5835 6199 -106 1631 161 29 32 chr3 225449815 225450126 -2074452 + AluJo SINE Alu 1 310 -2 646 253 67 16 chr3 225450128 225450381 -2074197 - L1M4 LINE L1 -2042 4104 3839 2110 128 3 3 chr3 225450430 225450735 -2073843 + AluSx SINE Alu 1 305 -7 1043 49 28 0 chr3 225451568 225451710 -2072868 - L1PA4 LINE L1 -1 6154 6009 300 200 82 9 chr3 225451846 225451884 -2072694 - L1ME2 LINE L1 -6 6158 6124 1048 142 49 11 chr3 225451884 225452067 -2072511 - L1PA8 LINE L1 0 6172 5983 300 200 82 9 chr3 225452067 225452138 -2072440 - L1ME2 LINE L1 -40 6124 6041 1827 149 37 0 chr3 225452951 225453246 -2071332 + 7SLRNA srpRNA srpRNA 1 306 -14 392 274 120 19 chr3 225453298 225453622 -2070956 + L1ME LINE L1 5522 5880 -286 2255 121 0 0 chr3 225453725 225454023 -2070555 - AluSx SINE Alu -14 298 1 637 248 148 4 chr3 225454085 225454315 -2070263 - HAL1 LINE L1 0 2507 2245 2211 133 7 0 chr3 225454315 225454624 -2069954 - AluSx SINE Alu -1 311 1 232 239 45 0 chr3 225454643 225454710 -2069868 - HAL1 LINE L1 -872 1635 1566 2278 102 0 0 chr3 225454733 225455027 -2069551 - AluSx SINE Alu -18 294 1 1742 157 27 20 chr3 225455027 225455320 -2069258 - AluJo SINE Alu -16 296 1 392 235 84 0 chr3 225455861 225455980 -2068598 + MIR3 SINE MIR 62 190 -18 2225 109 0 0 chr3 225456056 225456371 -2068207 - AluSx SINE Alu 0 315 1 1601 190 3 10 chr3 225457972 225458282 -2066296 - AluJo SINE Alu -4 308 1 2203 80 3 0 chr3 225458308 225458596 -2065982 + AluSx SINE Alu 1 289 -23 563 90 79 11 chr3 225458596 225458675 -2065903 - AluJo/FRAM SINE Alu -17 295 208 358 330 26 86 chr3 225458898 225459362 -2065216 + L1MC4a LINE L1 5478 5913 -1895 2252 251 56 50 chr3 225459375 225459721 -2064857 - L1ME1 LINE L1 -4 6162 5820 1376 208 8 0 chr3 225459721 225459981 -2064597 - L1PB4 LINE L1 -1 6155 5894 2252 251 56 50 chr3 225459981 225460048 -2064530 - L1ME1 LINE L1 -346 5820 5755 1523 137 7 61 chr3 225460048 225460325 -2064253 - AluSx SINE Alu -2 310 49 2252 251 56 50 chr3 225460325 225460933 -2063645 - L1ME1 LINE L1 -411 5755 5152 2399 84 0 0 chr3 225460933 225461244 -2063334 - AluY SINE Alu 0 311 1 2252 251 56 50 chr3 225461244 225461368 -2063210 - L1ME1 LINE L1 -1014 5152 5030 2748 7 0 0 chr3 225461368 225461672 -2062906 - AluY SINE Alu -7 304 1 2252 251 56 50 chr3 225461672 225461887 -2062691 - L1ME1 LINE L1 -1136 5030 4818 1934 130 10 10 chr3 225461887 225462194 -2062384 - AluSx SINE Alu -5 307 1 2252 251 56 50 chr3 225462194 225462239 -2062339 - L1ME1 LINE L1 -1348 4818 4775 7918 60 1 1 chr3 225462239 225463208 -2061370 - LTR5 LTR ERVK 0 969 1 2252 251 56 50 chr3 225463208 225463267 -2061311 - L1ME1 LINE L1 -1391 4775 4696 194 71 0 71 chr3 225463274 225463316 -2061262 + (TTCTCC)n Simple_repeat Simple_repeat 1 39 0 1179 223 10 33 chr3 225463890 225464195 -2060383 - AluSp SINE Alu -5 298 1 1426 149 48 3 chr3 225464202 225464497 -2060081 - AluJb SINE Alu -4 308 1 466 264 0 27 chr3 225464917 225465213 -2059365 + C-rich Low_complexity Low_complexity 1 287 0 246 356 0 0 chr3 225467645 225467732 -2056846 + MIR SINE MIR 172 258 -4 556 175 136 0 chr3 225468326 225468429 -2056149 + FLAM_C SINE Alu 1 117 -16 1151 163 55 0 chr3 225469219 225469421 -2055157 + AluJb SINE Alu 85 297 -15 528 113 0 0 chr3 225469663 225469734 -2054844 - FLAM SINE Alu -24 119 49 2006 99 0 4 chr3 225470306 225470601 -2053977 - AluY SINE Alu 0 306 13 1488 106 14 0 chr3 225470604 225470821 -2053757 + AluSg/x SINE Alu 92 311 -1 2251 185 76 6 chr3 225475737 225476612 -2047966 + L1MC/D LINE L1 4791 5704 -640 8160 68 3 4 chr3 225476615 225477623 -2046955 + LTR13 LTR ERVK 1 1007 0 280 303 84 19 chr3 225477781 225477936 -2046642 - L2 LINE L2 -448 2866 2702 22 0 0 0 chr3 225478633 225478655 -2045923 + GC_rich Low_complexity Low_complexity 1 22 0 51 17 0 0 chr3 225478765 225478823 -2045755 + GC_rich Low_complexity Low_complexity 1 58 0 186 167 0 0 chr3 225478876 225478912 -2045666 + G-rich Low_complexity Low_complexity 1 36 0 302 213 12 65 chr3 225479052 225479221 -2045357 + (CGGG)n Simple_repeat Simple_repeat 3 162 0 231 264 32 26 chr3 225479407 225479562 -2045016 + (CGGGG)n Simple_repeat Simple_repeat 1 156 0 24 67 0 0 chr3 225479898 225479943 -2044635 + GC_rich Low_complexity Low_complexity 1 45 0 212 250 59 44 chr3 225481748 225481816 -2042762 + MIR SINE MIR 61 129 -133 507 225 12 71 chr3 225482013 225482029 -2042549 - L1MA10 LINE L1 0 6334 6319 409 288 40 77 chr3 225482029 225482251 -2042327 - L1ME1 LINE L1 -4 6162 5949 847 209 18 0 chr3 225482417 225482580 -2041998 - U2 snRNA snRNA -17 171 6 222 37 0 0 chr3 225482596 225482623 -2041955 + (A)n Simple_repeat Simple_repeat 1 27 0 1985 157 0 0 chr3 225482636 225482948 -2041630 + AluSx SINE Alu 1 312 0 2061 120 0 0 chr3 225482972 225483263 -2041315 + AluSx SINE Alu 3 293 -19 772 223 79 68 chr3 225483263 225483397 -2041181 - L1M4 LINE L1 -1467 4679 4548 1790 190 48 11 chr3 225483397 225483749 -2040829 + MLT1A1 LTR MaLR 1 365 0 772 223 79 68 chr3 225483749 225483969 -2040609 - L1M4 LINE L1 -1598 4548 4321 734 225 0 0 chr3 225483969 225484107 -2040471 - FLAM_C SINE Alu -4 139 2 375 312 14 0 chr3 225484111 225484249 -2040329 - L1M4 LINE L1 -1815 4331 4192 587 100 10 60 chr3 225484249 225484349 -2040229 - L1PA8 LINE L1 0 6172 6078 2634 170 66 2 chr3 225484449 225484949 -2039629 - L1M1 LINE L1 -6779 786 255 322 161 16 0 chr3 225484950 225485012 -2039566 - L1M1 LINE L1 -7249 316 254 * 333 159 16 0 chr3 225485011 225485074 -2039504 - L1M1 LINE L1 -7248 317 254 * 356 145 16 0 chr3 225485073 225485135 -2039443 - L1M1 LINE L1 -7248 317 255 1043 231 14 111 chr3 225485136 225485486 -2039092 - L1M1 LINE L1 -7249 316 1 325 264 22 0 chr3 225485467 225485558 -2039020 + L1M4 LINE L1 4092 4184 -1962 * 2002 113 3 0 chr3 225485570 225485853 -2038725 + AluSx SINE Alu 1 284 -28 207 0 0 0 chr3 225485853 225485876 -2038702 + (TTAA)n Simple_repeat Simple_repeat 2 24 0 740 81 0 0 chr3 225485876 225485975 -2038603 + L1PA8 LINE L1 5804 5902 -270 1920 202 31 55 chr3 225486093 225487001 -2037577 - L1ME LINE L1 -436 5730 4849 1961 136 3 0 chr3 225487003 225487298 -2037280 + AluSx SINE Alu 1 296 -16 313 133 17 0 chr3 225487505 225487565 -2037013 - Alu SINE Alu -5 297 237 1922 135 7 16 chr3 225487978 225488281 -2036297 - AluSx SINE Alu -12 300 1 1481 180 3 17 chr3 225490071 225490371 -2034207 - AluJb SINE Alu -16 296 1 516 295 104 0 chr3 225490380 225490563 -2034015 + MIR SINE MIR 29 230 -32 619 285 94 41 chr3 225494915 225495234 -2029344 - HAL1 LINE L1 -2168 339 4 264 256 133 0 chr3 225495391 225495481 -2029097 + MIR SINE MIR 49 150 -112 528 78 26 0 chr3 225498587 225498664 -2025914 - AluS SINE Alu -233 80 2 992 194 0 0 chr3 225498689 225498854 -2025724 + FRAM SINE Alu 2 166 0 392 297 62 14 chr3 225499056 225499201 -2025377 - MIR SINE MIR -79 183 32 206 331 58 14 chr3 225499378 225499517 -2025061 - L2 LINE L2 -927 2387 2243 651 13 0 0 chr3 225501620 225501696 -2022882 + (CCCG)n Simple_repeat Simple_repeat 1 76 0 22 35 0 0 chr3 225504769 225504798 -2019780 + GC_rich Low_complexity Low_complexity 1 29 0 362 265 39 0 chr3 225506501 225506603 -2017975 - L1ME1 LINE L1 -182 5984 5879 23 0 0 0 chr3 225507599 225507622 -2016956 + AT_rich Low_complexity Low_complexity 1 23 0 1569 150 68 54 chr3 225507802 225508096 -2016482 + AluJo SINE Alu 1 298 -14 2297 95 0 7 chr3 225508427 225508722 -2015856 + AluSx SINE Alu 1 293 -19 398 274 38 0 chr3 225509790 225509896 -2014682 - L2 LINE L2 -10 3303 3194 1499 128 62 114 chr3 225509959 225510317 -2014261 + MER2 DNA MER2_type 2 340 -5 21 0 0 0 chr3 225510345 225510366 -2014212 + AT_rich Low_complexity Low_complexity 1 21 0 445 242 220 16 chr3 225511452 225511638 -2012940 - MIR SINE MIR -22 240 17 1752 166 3 38 chr3 225511971 225512284 -2012294 + AluJb SINE Alu 1 302 -10 2333 114 0 0 chr3 225512913 225513220 -2011358 - AluSx SINE Alu -5 307 1 349 255 39 0 chr3 225514252 225514354 -2010224 + L1ME1 LINE L1 5879 5984 -182 1163 194 186 4 chr3 225514947 225515205 -2009373 - AluSx SINE Alu -7 305 1 2190 174 59 19 chr3 225515688 225516155 -2008423 - L1PB4 LINE L1 -3 6153 5668 244 264 116 8 chr3 225516404 225516525 -2008053 - MLT1J LTR MaLR -279 232 99 421 250 69 0 chr3 225516621 225516737 -2007841 + MER3 DNA MER1_type 8 131 -78 241 280 97 0 chr3 225517156 225517249 -2007329 - L2 LINE L2 -28 3244 3143 489 356 75 12 chr3 225517290 225517311 -2007267 + L1ME2 LINE L1 4152 4170 -1976 2941 119 94 4 chr3 225517311 225517780 -2006798 + MER9 LTR ERVK 1 511 0 489 356 75 12 chr3 225517780 225518078 -2006500 + L1ME2 LINE L1 4170 4491 -1655 2089 110 13 7 chr3 225520553 225520853 -2003725 - AluSx SINE Alu -10 302 1 1580 280 141 16 chr3 225520856 225521704 -2002874 + L2 LINE L2 2341 3312 -1 659 253 96 46 chr3 225521950 225522377 -2002201 + L1ME2 LINE L1 5215 5668 -453 366 294 148 48 chr3 225522799 225523136 -2001442 + L2 LINE L2 2899 3269 -3 742 178 0 0 chr3 225523260 225523378 -2001200 + AluJb SINE Alu 179 296 -16 1524 163 99 11 chr3 225524835 225525117 -1999461 - AluJb SINE Alu -5 307 1 308 316 98 79 chr3 225525154 225525269 -1999309 - L1ME4a LINE L1 -56 6065 5954 1087 181 79 5 chr3 225525269 225525484 -1999094 - MER46A DNA MER2_type -4 232 2 308 316 98 79 chr3 225525484 225525735 -1998843 - L1ME4a LINE L1 -167 5954 5692 1841 148 40 16 chr3 225526488 225526792 -1997786 - AluJb SINE Alu -1 311 1 331 307 90 92 chr3 225526829 225526944 -1997634 - L1ME4a LINE L1 -56 6065 5951 1102 183 84 0 chr3 225526944 225527157 -1997421 - MER46A DNA MER2_type -4 232 2 331 307 90 92 chr3 225527157 225527452 -1997126 - L1ME4a LINE L1 -170 5951 5656 1466 160 96 28 chr3 225527965 225528247 -1996331 - AluJo SINE Alu -8 304 4 668 224 15 2 chr3 225528432 225528588 -1995990 + MER1B DNA MER1_type 4 129 -168 235 135 0 0 chr3 225528739 225528776 -1995802 + MER1B DNA MER1_type 133 129 -168 235 135 0 0 chr3 225528926 225528963 -1995615 + MER1B DNA MER1_type 133 129 -168 1443 148 25 0 chr3 225529834 225530088 -1994490 + MER1B DNA MER1_type 119 339 0 613 100 0 0 chr3 225530210 225530290 -1994288 + MADE1 DNA Mariner 1 80 0 1741 169 39 0 chr3 225530356 225530640 -1993938 - AluJb SINE Alu -9 303 9 23 0 0 0 chr3 225530675 225530698 -1993880 + AT_rich Low_complexity Low_complexity 1 23 0 351 292 98 7 chr3 225530775 225530976 -1993602 + L1ME2 LINE L1 5802 6029 -137 683 242 98 92 chr3 225531063 225531452 -1993126 + L1MC4a LINE L1 5437 5827 -1981 249 259 207 0 chr3 225531868 225532003 -1992575 - LTR16C LTR ERVL -250 241 79 726 147 6 61 chr3 225532349 225532512 -1992066 + AluSq SINE Alu 27 180 -133 313 175 0 19 chr3 225532913 225533056 -1991522 + AluJo SINE Alu 72 286 -16 349 255 39 0 chr3 225533253 225533355 -1991223 - L1ME1 LINE L1 -182 5984 5879 2254 98 0 7 chr3 225534388 225534683 -1989895 + AluSx SINE Alu 1 293 -19 416 248 48 9 chr3 225535752 225535857 -1988721 - L2 LINE L2 -11 3302 3194 1461 129 64 115 chr3 225535920 225536277 -1988301 + MER2 DNA MER2_type 2 340 -5 21 0 0 0 chr3 225536305 225536326 -1988252 + AT_rich Low_complexity Low_complexity 1 21 0 437 242 220 16 chr3 225537412 225537598 -1986980 - MIR SINE MIR -22 240 17 1785 168 0 38 chr3 225537931 225538246 -1986332 + AluJb SINE Alu 1 303 -9 2333 114 0 0 chr3 225538875 225539182 -1985396 - AluSx SINE Alu -5 307 1 212 313 30 15 chr3 225539278 225539345 -1985233 - L2 LINE L2 -252 3061 2994 2107 136 0 10 chr3 225539810 225540118 -1984460 - AluSx SINE Alu -7 305 1 22 35 0 0 chr3 225540175 225540204 -1984374 + AT_rich Low_complexity Low_complexity 1 29 0 4114 156 44 85 chr3 225540214 225541431 -1983147 - L1MA9 LINE L1 0 6312 5152 200 162 54 0 chr3 225541578 225541615 -1982963 + MIR SINE MIR 110 148 -60 408 236 134 6 chr3 225542379 225542536 -1982042 - MER3 DNA MER1_type -14 195 19 2056 89 14 4 chr3 225542899 225543215 -1981363 + AluSx SINE Alu 1 319 0 1562 158 132 0 chr3 225543257 225543523 -1981055 - AluJo SINE Alu -11 301 1 353 249 64 75 chr3 225545147 225545320 -1979258 - L1 LINE L1 -824 5322 5152 200 162 54 0 chr3 225545468 225545505 -1979073 + MIR SINE MIR 110 148 -60 428 238 128 6 chr3 225546263 225546427 -1978151 - MER3 DNA MER1_type -7 202 19 1970 151 6 3 chr3 225546791 225547102 -1977476 + AluSx SINE Alu 1 312 0 1947 119 0 0 chr3 225548144 225548405 -1976173 + AluSq SINE Alu 36 296 -17 1064 228 33 7 chr3 225548405 225548681 -1975897 + L1M4 LINE L1 4116 4398 -1748 245 128 0 0 chr3 225548667 225548706 -1975872 + L1M3 LINE L1 5699 5737 -446 * 1534 161 4 4 chr3 225548708 225548957 -1975621 + AluJb SINE Alu 64 312 0 204 300 62 75 chr3 225549794 225549954 -1974624 - L2 LINE L2 -58 3255 3098 283 128 0 0 chr3 225549980 225550027 -1974551 - MADE1 DNA Mariner -33 47 1 202 362 49 45 chr3 225550121 225550345 -1974233 - L2 LINE L2 -199 3073 2849 353 265 55 11 chr3 225550353 225550566 -1974012 - L2 LINE L2 -339 2974 2748 204 40 0 0 chr3 225553837 225553862 -1970716 + (GAAA)n Simple_repeat Simple_repeat 2 26 0 207 114 0 0 chr3 225554647 225554682 -1969896 + (TTC)n Simple_repeat Simple_repeat 3 37 0 228 262 85 43 chr3 225556643 225556784 -1967794 - L1ME LINE L1 -347 5823 5677 272 267 157 32 chr3 225556927 225557144 -1967434 - L1ME LINE L1 -623 5539 5296 2253 94 3 3 chr3 225557175 225557462 -1967116 - AluSx SINE Alu -25 287 1 2186 111 3 3 chr3 225557601 225557898 -1966680 + AluSp SINE Alu 1 297 -16 269 171 114 0 chr3 225559076 225559146 -1965432 + MER5A DNA MER1_type 47 124 -65 201 154 423 0 chr3 225559960 225560038 -1964540 + MER5A DNA MER1_type 77 187 -2 530 264 44 31 chr3 225560040 225560063 -1964515 - L1MC5 LINE L1 -772 7189 7168 1509 113 14 5 chr3 225560063 225560284 -1964294 - AluSq SINE Alu -5 308 86 530 264 44 31 chr3 225560284 225560487 -1964091 - L1MC5 LINE L1 -793 7168 6960 230 245 0 0 chr3 225560534 225560583 -1963995 - L1MC3 LINE L1 -1049 6736 6688 1747 88 0 0 chr3 225560687 225560913 -1963665 - AluSg/x SINE Alu -14 298 73 838 135 7 7 chr3 225561699 225561840 -1962738 - AluJo SINE Alu -171 141 1 225 198 81 23 chr3 225562111 225562197 -1962381 - L1ME LINE L1 -356 5765 5675 2135 104 27 0 chr3 225563714 225564012 -1960566 + AluSx SINE Alu 1 306 -6 21 71 0 0 chr3 225565985 225566027 -1958551 + GC_rich Low_complexity Low_complexity 1 42 0 230 231 0 39 chr3 225566363 225566441 -1958137 + (CCCCG)n Simple_repeat Simple_repeat 2 76 0 847 143 7 0 chr3 225567000 225567140 -1957438 - AluJo SINE Alu -171 141 1 284 255 78 26 chr3 225567406 225567559 -1957019 - L1ME LINE L1 -356 5765 5605 812 82 0 0 chr3 225567620 225567730 -1956848 - AluSp/q SINE Alu -17 296 187 460 95 0 0 chr3 225567728 225567791 -1956787 + AluY SINE Alu 212 274 -37 * 412 329 77 23 chr3 225568237 225568547 -1956031 - L1ME1 LINE L1 -172 5994 5668 1474 65 172 53 chr3 225570857 225571119 -1953459 + AluSx SINE Alu 1 293 -19 224 130 22 0 chr3 225572701 225572747 -1951831 + GA-rich Low_complexity Low_complexity 1 47 0 195 173 133 27 chr3 225574049 225574124 -1950454 + MIR SINE MIR 172 254 -8 2030 92 46 0 chr3 225574125 225574409 -1950169 - AluSp SINE Alu -16 297 1 1188 248 143 42 chr3 225574427 225574818 -1949760 - MER20B DNA MER1_type -65 718 243 1703 125 103 0 chr3 225574818 225575099 -1949479 + AluSx SINE Alu 1 310 -2 1188 248 143 42 chr3 225575099 225575308 -1949270 - MER20B DNA MER1_type -540 243 57 481 289 127 5 chr3 225576182 225576379 -1948199 + MER102b DNA MER1_type 109 329 -12 573 259 0 4 chr3 225577538 225577821 -1946757 + (CA)n Simple_repeat Simple_repeat 1 281 0 497 264 35 17 chr3 225578201 225578375 -1946203 - MER53 DNA DNA -12 177 1 2070 102 0 3 chr3 225578382 225578689 -1945889 - AluSx SINE Alu 0 306 1 32 0 0 0 chr3 225579258 225579290 -1945288 + AT_rich Low_complexity Low_complexity 1 32 0 3479 149 38 74 chr3 225579294 225579559 -1945019 - L1MC1 LINE L1 -1 6332 6059 2079 114 0 3 chr3 225579559 225579857 -1944721 + AluSx SINE Alu 1 297 -15 3479 149 38 74 chr3 225579857 225580375 -1944203 - L1MC1 LINE L1 -274 6059 5577 1151 70 0 6 chr3 225580375 225580533 -1944045 + AluY SINE Alu 149 305 -6 932 174 0 166 chr3 225580533 225580655 -1943923 - L1MC1 LINE L1 -773 5586 5445 1771 171 7 0 chr3 225580655 225580954 -1943624 - AluJb SINE Alu -9 303 3 932 174 0 166 chr3 225580954 225581217 -1943361 - L1MC1 LINE L1 -914 5445 5265 2026 122 3 0 chr3 225581228 225581523 -1943055 - AluSx SINE Alu -16 296 1 26 30 0 0 chr3 225581574 225581607 -1942971 + AT_rich Low_complexity Low_complexity 1 33 0 1918 142 0 16 chr3 225581830 225582140 -1942438 - AluJb SINE Alu -7 305 1 559 186 52 0 chr3 225582170 225582267 -1942311 + FLAM_C SINE Alu 19 120 -23 294 333 67 12 chr3 225582471 225582636 -1941942 - L1ME LINE L1 -347 5823 5650 321 234 9 37 chr3 225582861 225582968 -1941610 - L1ME LINE L1 -763 5399 5296 1856 122 7 11 chr3 225582999 225583277 -1941301 - AluSx SINE Alu -25 287 11 7270 68 18 17 chr3 225583277 225584265 -1940313 + LTR13 LTR ERVK 19 1007 0 269 310 77 13 chr3 225584423 225584578 -1940000 - L2 LINE L2 -448 2866 2702 861 283 51 32 chr3 225585149 225585787 -1938791 + L1ME4a LINE L1 4978 5627 -539 1415 167 99 11 chr3 225586450 225586732 -1937846 - AluJb SINE Alu -5 307 1 402 306 134 77 chr3 225586734 225586884 -1937694 - L1ME4a LINE L1 -5 6116 5976 1171 178 84 0 chr3 225586884 225587097 -1937481 - MER46A DNA MER2_type -4 232 2 402 306 134 77 chr3 225587097 225587348 -1937230 - L1ME4a LINE L1 -145 5976 5692 1051 171 131 14 chr3 225587908 225588130 -1936448 - AluJo SINE Alu -6 306 59 303 329 132 0 chr3 225588548 225588715 -1935863 + L1ME4a LINE L1 5612 5800 -321 734 279 51 25 chr3 225588807 225589044 -1935534 + MIR SINE MIR 20 262 0 329 299 54 0 chr3 225589218 225589365 -1935213 + L1ME4a LINE L1 5961 6115 -6 642 296 103 51 chr3 225589714 225589820 -1934758 - L1M4 LINE L1 -1705 4441 4342 1694 150 9 53 chr3 225589820 225590140 -1934438 - AluJo SINE Alu -6 306 1 642 296 103 51 chr3 225590140 225590675 -1933903 - L1M4 LINE L1 -1804 4342 3767 1206 211 7 4 chr3 225590681 225590960 -1933618 - AluSx SINE Alu -15 297 18 21 0 0 0 chr3 225591059 225591080 -1933498 + GC_rich Low_complexity Low_complexity 1 21 0 742 193 18 0 chr3 225591308 225591466 -1933112 + MER1B DNA MER1_type 3 129 -168 225 162 0 0 chr3 225591461 225591498 -1933080 + MER1B DNA MER1_type 133 129 -168 * 244 135 0 0 chr3 225591493 225591530 -1933048 + MER1B DNA MER1_type 133 129 -168 234 162 0 0 chr3 225591868 225591905 -1932673 + MER1B DNA MER1_type 133 129 -168 225 162 0 0 chr3 225592023 225592060 -1932518 + MER1B DNA MER1_type 133 129 -168 225 162 0 0 chr3 225592145 225592182 -1932396 + MER1B DNA MER1_type 133 129 -168 245 236 64 83 chr3 225592311 225592468 -1932110 - Charlie3 DNA MER1_type -2395 315 162 * 1513 134 25 0 chr3 225592330 225592568 -1932010 + MER1B DNA MER1_type 96 339 0 541 138 0 0 chr3 225592690 225592770 -1931808 + MADE1 DNA Mariner 1 80 0 1682 162 39 0 chr3 225592835 225593119 -1931459 - AluJb SINE Alu -9 303 9 23 0 0 0 chr3 225593154 225593177 -1931401 + AT_rich Low_complexity Low_complexity 1 23 0 384 300 93 2 chr3 225593254 225593455 -1931123 + L1ME2 LINE L1 5802 6029 -137 736 259 82 80 chr3 225593542 225593932 -1930646 + L1MC3 LINE L1 5437 5827 -1981 1897 111 7 0 chr3 225594829 225595100 -1929478 + AluSq SINE Alu 27 299 -14 230 245 0 0 chr3 225595204 225595253 -1929325 + L1MC3 LINE L1 6688 6736 -1049 537 271 44 26 chr3 225595297 225595502 -1929076 + L1MC5 LINE L1 6957 7168 -793 1588 88 14 5 chr3 225595502 225595717 -1928861 + AluSq SINE Alu 85 301 -12 537 271 44 26 chr3 225595717 225595740 -1928838 + L1MC5 LINE L1 7168 7189 -772 282 171 114 0 chr3 225596066 225596136 -1928442 - MER5A DNA MER1_type -65 124 47 325 249 74 0 chr3 225596751 225596862 -1927716 - MER3 DNA MER1_type -105 104 1 199 265 20 0 chr3 225597313 225597362 -1927216 - L2 LINE L2 0 3313 3264 1928 89 0 11 chr3 225609948 225610267 -1914311 + AluSg SINE Alu 14 329 0 226 282 176 14 chr3 225610267 225610483 -1914095 + L1ME4a LINE L1 5871 6121 0 415 330 47 16 chr3 225610688 225610879 -1913699 + MIR3 SINE MIR 12 208 0 197 265 0 20 chr3 225611421 225611470 -1913108 + MIR SINE MIR 20 67 -195 286 250 181 35 chr3 225614335 225614479 -1910099 - MIR SINE MIR -51 211 47 2256 80 0 10 chr3 225614738 225615037 -1909541 + AluSx SINE Alu 1 296 -16 314 311 126 37 chr3 225616950 225617140 -1907438 + L1M4c LINE L1 1101 1307 -5077 2146 98 3 0 chr3 225617151 225617499 -1907079 + AluSx SINE Alu 1 312 0 198 336 36 45 chr3 225619989 225620099 -1904479 + MIR SINE MIR 111 219 -43 1905 100 57 0 chr3 225620107 225620387 -1904191 + AluSx SINE Alu 1 296 -16 2112 111 7 0 chr3 225621117 225621424 -1903154 - AluSx SINE Alu -3 309 1 384 227 0 0 chr3 225621814 225621889 -1902689 - MIR SINE MIR -97 111 37 417 287 84 72 chr3 225621995 225622424 -1902154 - L2 LINE L2 0 3313 2880 1898 146 33 0 chr3 225622466 225622768 -1901810 - AluSx SINE Alu 0 312 1 1438 128 0 0 chr3 225622805 225623008 -1901570 + AluSq SINE Alu 1 203 -110 814 105 0 0 chr3 225623439 225623553 -1901025 + AluSg/x SINE Alu 199 312 0 214 356 0 14 chr3 225623613 225623686 -1900892 - L2 LINE L2 -4 3309 3238 220 368 114 2 chr3 225624853 225624945 -1899633 + MIR SINE MIR 60 160 -48 1527 161 89 156 chr3 225625193 225625789 -1898789 - LTR38B LTR ERV1 -54 556 1 303 183 14 14 chr3 225627620 225627691 -1896887 + MER5A DNA MER1_type 2 72 -117 761 154 23 8 chr3 225627722 225627852 -1896726 - FLAM_C SINE Alu 0 133 2 2340 88 0 0 chr3 225628336 225628632 -1895946 - AluSx SINE Alu -16 296 1 734 270 4 27 chr3 225628717 225628980 -1895598 + L1ME4a LINE L1 5503 5759 -362 2088 95 32 3 chr3 225629026 225629311 -1895267 + AluSq SINE Alu 1 293 -20 380 32 0 63 chr3 225629349 225629412 -1895166 + (CA)n Simple_repeat Simple_repeat 2 60 0 398 291 209 18 chr3 225629773 225629913 -1894665 + L1ME4a LINE L1 5784 5896 -225 2359 68 0 7 chr3 225629913 225630221 -1894357 - AluY SINE Alu -5 306 1 398 291 209 18 chr3 225630221 225630300 -1894278 + L1ME4a LINE L1 5896 6045 -76 713 312 84 44 chr3 225630334 225630498 -1894080 - L1M4 LINE L1 -1645 4501 4345 1727 150 9 53 chr3 225630498 225630818 -1893760 - AluJo SINE Alu -6 306 1 713 312 84 44 chr3 225630818 225631350 -1893228 - L1M4 LINE L1 -1801 4345 3766 1792 105 3 85 chr3 225631350 225631682 -1892896 - AluSx SINE Alu 0 307 1 713 312 84 44 chr3 225631682 225631780 -1892798 - L1M4 LINE L1 -2380 3766 3673 322 315 54 15 chr3 225631789 225631919 -1892659 - L1M4 LINE L1 -2503 3643 3509 250 95 24 0 chr3 225631942 225631984 -1892594 - Alu SINE Alu -11 290 248 2229 105 0 7 chr3 225636717 225637023 -1887555 - AluSx SINE Alu -8 304 1 415 235 147 0 chr3 225637048 225637150 -1887428 - L1ME4a LINE L1 0 6121 6005 1569 86 14 0 chr3 225637552 225637761 -1886817 + AluSp SINE Alu 83 294 -19 2235 113 0 0 chr3 225638499 225638808 -1885770 - AluSx SINE Alu -3 309 1 192 338 25 0 chr3 225641221 225641301 -1883277 - MIR SINE MIR -63 145 64 25 31 0 0 chr3 225647233 225647265 -1877313 + GC_rich Low_complexity Low_complexity 1 32 0 222 184 0 0 chr3 225647781 225647819 -1876759 + C-rich Low_complexity Low_complexity 3 40 0 196 320 130 30 chr3 225647821 225647921 -1876657 + L3 LINE CR1 983 1092 -485 1974 103 6 29 chr3 225660707 225661018 -1863560 + AluSx SINE Alu 1 304 -8 241 169 31 15 chr3 225661062 225661127 -1863451 + (TA)n Simple_repeat Simple_repeat 2 67 0 612 266 71 64 chr3 225664477 225664543 -1860035 - L1MC4a LINE L1 -1921 5887 5823 2297 82 10 0 chr3 225664543 225664846 -1859732 - AluSq SINE Alu -7 306 1 612 266 71 64 chr3 225664846 225665061 -1859517 - L1MC4a LINE L1 -1985 5823 5604 394 275 100 15 chr3 225665143 225665336 -1859242 - L1MC4a LINE L1 -849 5484 5290 2169 94 0 47 chr3 225665654 225665972 -1858606 - AluSg SINE Alu -7 303 1 327 337 105 12 chr3 225666026 225666198 -1858380 + MIR SINE MIR 74 261 -1 1696 168 3 31 chr3 225668426 225668747 -1855831 - AluJo SINE Alu 0 312 1 1386 170 3 56 chr3 225668867 225669173 -1855405 - AluJb SINE Alu -22 290 1 252 0 0 0 chr3 225669279 225669307 -1855271 + (TC)n Simple_repeat Simple_repeat 2 29 0 2134 118 0 13 chr3 225669327 225669642 -1854936 - AluSx SINE Alu 0 312 2 22 35 0 0 chr3 225669678 225669707 -1854871 + AT_rich Low_complexity Low_complexity 1 29 0 310 202 87 0 chr3 225669707 225669776 -1854802 - L1MC4 LINE L1 -1333 6989 1995 1986 107 4 7 chr3 225669783 225670064 -1854514 - AluSx SINE Alu -30 282 3 281 64 43 0 chr3 225670069 225670116 -1854462 + (TTTTA)n Simple_repeat Simple_repeat 2 50 0 776 154 0 0 chr3 225670116 225670233 -1854345 - FLAM_C SINE Alu -25 118 2 1801 142 28 0 chr3 225670785 225671073 -1853505 - AluJb SINE Alu -14 298 3 309 297 33 0 chr3 225671213 225671304 -1853274 - L2 LINE L2 0 3272 3179 2160 113 0 0 chr3 225671834 225672126 -1852452 - AluSx SINE Alu -18 294 3 489 34 0 0 chr3 225672175 225672234 -1852344 + (TCCC)n Simple_repeat Simple_repeat 4 62 0 254 233 0 0 chr3 225672258 225672301 -1852277 - FLAM_A SINE Alu -89 43 1 274 270 190 0 chr3 225672475 225672575 -1852003 + MIR3 SINE MIR 77 195 -13 231 272 32 95 chr3 225672685 225672734 -1851844 + MIR SINE MIR 47 98 -110 2158 84 3 0 chr3 225672734 225673042 -1851536 - AluSp SINE Alu 0 309 1 231 272 32 95 chr3 225673042 225673149 -1851429 + MIR SINE MIR 98 195 -13 867 299 61 42 chr3 225673566 225674087 -1850491 - L1MC4 LINE L1 -5146 1270 740 594 179 32 16 chr3 225674666 225674789 -1849789 + L2 LINE L2 3179 3303 -10 357 218 30 20 chr3 225674851 225674952 -1849626 - MER20B DNA MER1_type -11 772 671 234 188 21 0 chr3 225675121 225675169 -1849409 + LTR16A1 LTR ERVL 53 101 -356 490 234 119 2 chr3 225675205 225675421 -1849157 + LTR16A LTR ERVL 166 443 -7 283 236 64 82 chr3 225675421 225675457 -1849121 - MER20B DNA MER1_type -129 654 619 2021 111 42 0 chr3 225675457 225675745 -1848833 + AluSx SINE Alu 1 300 -12 283 236 64 82 chr3 225675745 225675818 -1848760 - MER20B DNA MER1_type -164 619 547 728 273 121 7 chr3 225675943 225676337 -1848241 - MER20B DNA MER1_type -251 532 2 255 277 0 0 chr3 225676337 225676395 -1848183 - MER20B DNA MER1_type -725 58 1 486 289 64 25 chr3 225676412 225676616 -1847962 - MIR SINE MIR -43 219 8 1845 126 11 11 chr3 225676670 225676997 -1847581 - AluSg SINE Alu 0 327 1 2071 93 7 10 chr3 225676999 225677300 -1847278 - AluSq SINE Alu -12 301 2 213 278 0 0 chr3 225677313 225677367 -1847211 - MER5B DNA MER1_type -124 54 1 188 264 0 28 chr3 225677540 225677612 -1846966 + L2 LINE L2 1129 1198 -2116 416 276 24 29 chr3 225677613 225677783 -1846795 - LTR16B LTR ERVL -1 463 295 4118 92 9 11 chr3 225678187 225678645 -1845933 + MER41A LTR ERV1 1 459 -95 2149 82 9 31 chr3 225678645 225678962 -1845616 + AluSg SINE Alu 1 310 0 4118 92 9 11 chr3 225678962 225679058 -1845520 + MER41A LTR ERV1 459 554 0 295 298 117 0 chr3 225680271 225680365 -1844213 + L2 LINE L2 3143 3247 -25 1091 186 41 5 chr3 225681429 225681649 -1842929 + AluJb SINE Alu 85 312 0 454 102 19 46 chr3 225681693 225681801 -1842777 + (GAAA)n Simple_repeat Simple_repeat 4 108 0 2270 93 3 0 chr3 225681832 225682134 -1842444 - AluSp SINE Alu -10 303 1 224 236 0 0 chr3 225682303 225682358 -1842220 + A-rich Low_complexity Low_complexity 1 55 0 906 89 0 0 chr3 225682672 225682795 -1841783 - AluSg SINE Alu -187 123 1 1933 123 10 3 chr3 225683385 225683686 -1840892 - AluSg SINE Alu -7 303 1 678 171 0 0 chr3 225683870 225683981 -1840597 - FRAM SINE Alu -25 151 41 1936 94 65 4 chr3 225683992 225684269 -1840309 - AluSc SINE Alu -15 294 1 309 268 103 88 chr3 225684282 225684312 -1840266 + L1ME4a LINE L1 5170 5198 -948 1328 142 50 50 chr3 225684312 225684614 -1839964 + AluSx SINE Alu 1 302 0 309 268 103 88 chr3 225684614 225684777 -1839801 + L1ME4a LINE L1 5198 5366 -780 536 279 74 63 chr3 225684781 225684850 -1839728 + L1ME4a LINE L1 5376 5443 -678 2172 112 0 0 chr3 225684850 225685145 -1839433 - AluSq SINE Alu -18 295 1 536 279 74 63 chr3 225685145 225685254 -1839324 + L1ME4a LINE L1 5443 5549 -572 1992 110 24 3 chr3 225685254 225685545 -1839033 - AluJb SINE Alu -11 301 5 536 279 74 63 chr3 225685545 225685773 -1838805 + L1ME4a LINE L1 5549 5793 -328 2065 96 26 13 chr3 225685773 225686076 -1838502 + AluSp SINE Alu 1 307 -6 536 279 74 63 chr3 225686076 225686234 -1838344 + L1ME4a LINE L1 5793 5948 -173 2412 80 0 0 chr3 225686341 225686654 -1837924 - AluSq SINE Alu 0 313 1 2135 116 0 3 chr3 225686656 225686948 -1837630 - AluSx SINE Alu -21 291 1 359 270 112 66 chr3 225686967 225687226 -1837352 + L1MC5 LINE L1 7499 7769 -192 182 354 52 0 chr3 225687814 225687910 -1836668 + L2 LINE L2 2949 3049 -223 359 192 41 0 chr3 225688191 225688264 -1836314 + MLT1F LTR MaLR 465 540 -2 351 281 123 0 chr3 225688377 225688523 -1836055 - MIR SINE MIR -3 259 96 243 256 141 26 chr3 225688572 225688650 -1835928 + MIR SINE MIR 51 137 -71 2217 110 7 0 chr3 225688653 225688961 -1835617 - AluSx SINE Alu -2 310 1 219 69 0 0 chr3 225689139 225689168 -1835410 + (TG)n Simple_repeat Simple_repeat 2 30 0 592 221 33 17 chr3 225689804 225689985 -1834593 - MER53 DNA DNA 0 189 6 325 239 65 0 chr3 225692127 225692219 -1832359 - MIR3 SINE MIR -7 201 104 2213 105 3 3 chr3 225692940 225693245 -1831333 + AluSg SINE Alu 1 305 -5 406 337 134 18 chr3 225693833 225694281 -1830297 + L2 LINE L2 2809 3308 -5 2102 119 3 0 chr3 225694350 225694652 -1829926 + AluSx SINE Alu 1 303 -9 26 0 0 0 chr3 225694695 225694721 -1829857 + AT_rich Low_complexity Low_complexity 1 26 0 829 147 8 0 chr3 225694768 225694782 -1829796 - AluJo SINE Alu -177 135 123 180 0 0 0 chr3 225694782 225694802 -1829776 + (TG)n Simple_repeat Simple_repeat 1 20 0 829 147 8 0 chr3 225694802 225694916 -1829662 - AluJo SINE Alu -189 123 6 730 238 47 0 chr3 225694919 225695091 -1829487 - L1MA8 LINE L1 -46 6245 6066 2567 20 0 3 chr3 225695119 225695417 -1829161 - AluY SINE Alu -14 297 1 2104 204 37 24 chr3 225695423 225695914 -1828664 - L1MA8 LINE L1 -142 6149 5653 2294 93 0 0 chr3 225695948 225696259 -1828319 - AluY SINE Alu 0 311 1 1864 152 3 3 chr3 225696261 225696557 -1828021 - AluJo SINE Alu -16 296 1 230 225 0 54 chr3 225696565 225696676 -1827902 + (CCCA)n Simple_repeat Simple_repeat 3 107 0 2368 136 17 2 chr3 225696680 225697108 -1827470 - L1MA8 LINE L1 -622 5669 5236 277 390 0 14 chr3 225697496 225697637 -1826941 + L2 LINE L2 3129 3267 -5 23 0 0 0 chr3 225697919 225697942 -1826636 + AT_rich Low_complexity Low_complexity 1 23 0 1580 163 38 24 chr3 225698157 225698446 -1826132 + AluJo SINE Alu 5 297 -15 452 278 162 66 chr3 225698764 225698963 -1825615 - L1ME4a LINE L1 -63 6058 5880 2546 167 16 25 chr3 225698963 225699401 -1825177 + Tigger2a DNA MER2_type 1 434 0 452 278 162 66 chr3 225699401 225699427 -1825151 - L1ME4a LINE L1 -241 5880 5858 1642 181 7 0 chr3 225699427 225699749 -1824829 - AluJb SINE Alu 0 312 1 452 278 162 66 chr3 225699749 225699947 -1824631 - L1ME4a LINE L1 -263 5858 5593 1973 111 17 17 chr3 225699957 225700088 -1824490 + AluSx SINE Alu 1 131 -181 1748 134 10 13 chr3 225700088 225700386 -1824192 + AluSc SINE Alu 1 297 -12 1973 111 17 17 chr3 225700386 225700552 -1824026 + AluSx SINE Alu 130 298 -14 1564 266 27 31 chr3 225701236 225701752 -1822826 + LTR40a LTR ERVL 6 519 0 2107 80 70 0 chr3 225704058 225704345 -1820233 + AluSx SINE Alu 1 307 -5 273 139 0 0 chr3 225704345 225704388 -1820190 + FLAM SINE Alu 85 127 -6 260 295 64 0 chr3 225705329 225705407 -1819171 - MIR3 SINE MIR -40 168 86 1368 221 86 37 chr3 225706442 225706849 -1817729 + MLT1C LTR MaLR 6 432 -35 2127 109 3 6 chr3 225707420 225707733 -1816845 - AluSp SINE Alu -1 312 1 2204 75 0 0 chr3 225708113 225708442 -1816136 + AluSg SINE Alu 1 329 0 248 259 123 37 chr3 225708496 225708658 -1815920 + L1ME4a LINE L1 5946 6121 0 370 330 47 16 chr3 225708863 225709054 -1815524 + MIR3 SINE MIR 12 208 0 197 265 0 20 chr3 225709596 225709645 -1814933 + MIR SINE MIR 20 67 -195 299 243 181 35 chr3 225712916 225713060 -1811518 - MIR SINE MIR -51 211 47 2270 77 0 10 chr3 225713319 225713618 -1810960 + AluSx SINE Alu 1 296 -16 314 311 126 37 chr3 225715471 225715661 -1808917 + L1M4c LINE L1 1101 1307 -5077 2146 98 3 0 chr3 225715672 225716032 -1808546 + AluSx SINE Alu 1 312 0 1919 96 57 0 chr3 225718640 225718920 -1805658 + AluSx SINE Alu 1 296 -16 1751 237 50 82 chr3 225719622 225719650 -1804928 - L1M4 LINE L1 -843 5303 5276 1850 123 3 55 chr3 225719650 225719976 -1804602 - AluSx SINE Alu -3 309 1 1751 237 50 82 chr3 225719976 225720739 -1803839 - L1M4 LINE L1 -870 5276 4537 806 136 8 0 chr3 225720769 225720894 -1803684 + AluSq/x SINE Alu 1 126 -187 194 273 0 0 chr3 225728950 225729005 -1795573 - L2 LINE L2 -24 3248 3194 2386 71 7 3 chr3 225730131 225730440 -1794138 - AluSp SINE Alu -2 311 2 645 292 64 26 chr3 225735193 225735283 -1789295 - MIR SINE MIR -7 255 170 377 221 13 0 chr3 225735283 225735360 -1789218 - MER116 DNA Mariner 0 80 3 645 292 64 26 chr3 225735360 225735502 -1789076 - MIR SINE MIR -92 170 14 186 256 0 0 chr3 225735618 225735657 -1788921 - L2 LINE L2 -1 3312 3274 754 286 15 5 chr3 225736567 225736763 -1787815 - MIR SINE MIR -48 214 17 544 117 0 27 chr3 225737295 225737406 -1787172 + (TGG)n Simple_repeat Simple_repeat 3 110 0 725 294 70 98 chr3 225737524 225737679 -1786899 - L1M4 LINE L1 -2503 3643 3485 1686 123 78 0 chr3 225737679 225737948 -1786630 - AluY SINE Alu -21 290 1 725 294 70 98 chr3 225737948 225737996 -1786582 - L1M4 LINE L1 -2661 3485 3437 2137 98 7 0 chr3 225737996 225738315 -1786263 + AluSx SINE Alu 1 312 0 725 294 70 98 chr3 225738315 225738694 -1785884 - L1M4 LINE L1 -2709 3437 3076 382 272 112 47 chr3 225738811 225738980 -1785598 - L1MEd LINE L1 -5933 186 7 1103 164 6 0 chr3 225739720 225739897 -1784681 + AluJo SINE Alu 5 182 -130 443 63 16 0 chr3 225739939 225740002 -1784576 + (TC)n Simple_repeat Simple_repeat 1 64 0 869 129 0 50 chr3 225740241 225740411 -1784167 - FLAM_C SINE Alu 0 133 1 2011 130 6 19 chr3 225740840 225741156 -1783422 - AluSx SINE Alu 0 312 1 6534 92 25 0 chr3 225741225 225742866 -1781712 - L1PA8 LINE L1 0 6172 4339 194 273 0 0 chr3 225749537 225749592 -1774986 - L2 LINE L2 -24 3248 3194 218 133 66 60 chr3 225749754 225749920 -1774658 + (GTATG)n Simple_repeat Simple_repeat 5 171 0 * 317 322 0 0 chr3 225749864 225750386 -1774192 + GA-rich Low_complexity Low_complexity 1 522 0 228 128 64 64 chr3 225750123 225750295 -1774283 + (GTATG)n Simple_repeat Simple_repeat 5 176 0 * 207 151 58 58 chr3 225750318 225750545 -1774033 + (GTATG)n Simple_repeat Simple_repeat 1 227 0 2370 72 7 3 chr3 225751047 225751354 -1773224 - AluSp SINE Alu -4 309 2 238 135 65 59 chr3 225756140 225756310 -1768268 + (GTATG)n Simple_repeat Simple_repeat 1 171 0 226 144 58 64 chr3 225756529 225756702 -1767876 + (GTATG)n Simple_repeat Simple_repeat 5 176 0 218 326 0 6 chr3 225756781 225756959 -1767619 + GA-rich Low_complexity Low_complexity 2 178 0 * 228 144 58 64 chr3 225756860 225757033 -1767545 + (GTATG)n Simple_repeat Simple_repeat 5 176 0 235 161 52 63 chr3 225757071 225757245 -1767333 + (GTATG)n Simple_repeat Simple_repeat 5 176 0 205 333 0 0 chr3 225757354 225757510 -1767068 + GA-rich Low_complexity Low_complexity 2 157 0 217 146 64 58 chr3 225757703 225757874 -1766704 + (GTATG)n Simple_repeat Simple_repeat 5 176 0 2316 71 6 10 chr3 225758477 225758788 -1765790 - AluSp SINE Alu -2 311 2 1038 134 0 5 chr3 225761128 225761448 -1763130 + (TGG)n Simple_repeat Simple_repeat 1 503 -62 1102 92 0 32 chr3 225761448 225761633 -1762945 + (ATGGTG)n Simple_repeat Simple_repeat 2 180 0 1038 134 0 5 chr3 225761633 225761696 -1762882 + (TGG)n Simple_repeat Simple_repeat 503 565 0 757 286 18 14 chr3 225761730 225761950 -1762628 - MIR SINE MIR -41 221 1 213 315 14 0 chr3 225762166 225762239 -1762339 + (GCTG)n Simple_repeat Simple_repeat 4 77 0 2186 116 0 0 chr3 225762797 225763091 -1761487 + AluSx SINE Alu 1 294 -18 277 331 55 24 chr3 225763133 225763260 -1761318 - L2 LINE L2 -19 3294 3164 186 261 174 11 chr3 225764146 225764238 -1760340 + MIR3 SINE MIR 99 205 -3 341 259 0 29 chr3 225764705 225764844 -1759734 + (CCCTG)n Simple_repeat Simple_repeat 4 138 0 320 322 115 17 chr3 225765790 225765964 -1758614 + MIR SINE MIR 49 239 -23 204 176 0 82 chr3 225766266 225766542 -1758036 + (CGGTG)n Simple_repeat Simple_repeat 1 253 0 977 271 155 22 chr3 225768573 225768987 -1755591 + L2 LINE L2 2843 3311 -2 2040 96 4 0 chr3 225769140 225769410 -1755168 - AluSq SINE Alu -32 281 11 2148 84 3 27 chr3 225770187 225770486 -1754092 + AluSx SINE Alu 1 292 -20 2224 110 0 3 chr3 225772098 225772559 -1752019 + AluSc SINE Alu 1 460 0 239 114 23 0 chr3 225773164 225773208 -1751370 + (CA)n Simple_repeat Simple_repeat 2 46 0 1431 183 7 7 chr3 225773601 225773874 -1750704 + AluSx SINE Alu 40 312 0 890 196 0 0 chr3 225773880 225774038 -1750540 + FRAM SINE Alu 4 161 -5 748 164 12 0 chr3 225774058 225774305 -1750273 + (CATA)n Simple_repeat Simple_repeat 1 250 0 203 79 26 0 chr3 225774318 225774356 -1750222 + (TTCA)n Simple_repeat Simple_repeat 4 42 0 182 254 45 30 chr3 225777008 225777075 -1747503 + L2 LINE L2 3024 3091 -181 385 270 132 37 chr3 225777153 225777342 -1747236 + MIR SINE MIR 56 262 0 238 270 56 0 chr3 225778654 225778780 -1745798 + (CCCCAG)n Simple_repeat Simple_repeat 1 133 0 215 272 148 0 chr3 225778786 225778867 -1745711 + MIR3 SINE MIR 97 189 -19 329 299 54 0 chr3 225779163 225779310 -1745268 - L1ME4a LINE L1 -6 6115 5961 714 283 51 25 chr3 225779484 225779721 -1744857 - MIR SINE MIR 0 262 20 291 335 132 0 chr3 225779813 225779980 -1744598 - L1ME4a LINE L1 -321 5800 5612 267 263 30 30 chr3 225780416 225780515 -1744063 - MIR SINE MIR -119 143 45 2196 93 3 0 chr3 225780515 225780815 -1743763 - AluSx SINE Alu -9 303 3 22 56 0 0 chr3 225781058 225781094 -1743484 + GC_rich Low_complexity Low_complexity 1 36 0 224 29 0 29 chr3 225781103 225781137 -1743441 + (CGGGG)n Simple_repeat Simple_repeat 1 33 0 2165 78 17 0 chr3 225781221 225781516 -1743062 - AluSx SINE Alu -12 300 1 2337 87 3 0 chr3 225783271 225783571 -1741007 + AluSx SINE Alu 1 301 -11 236 53 26 0 chr3 225783571 225783609 -1740969 + (TA)n Simple_repeat Simple_repeat 2 40 0 2073 172 38 36 chr3 225783614 225784160 -1740418 - MLT2A2 LTR ERVL 0 554 1 4654 207 64 99 chr3 225784337 225784695 -1739883 + L1MC1 LINE L1 3524 3893 -2437 2295 70 0 0 chr3 225784695 225785018 -1739560 + AluY SINE Alu 1 323 0 4654 207 64 99 chr3 225785018 225785604 -1738974 + L1MC1 LINE L1 3893 4498 -1832 2105 99 0 14 chr3 225785604 225785898 -1738680 - AluSx SINE Alu -10 302 13 4654 207 64 99 chr3 225785898 225786686 -1737892 + L1MC1 LINE L1 4498 5312 -1018 2005 92 0 59 chr3 225786686 225786992 -1737586 + AluSx SINE Alu 1 288 -24 4654 207 64 99 chr3 225786992 225787271 -1737307 + L1MC1 LINE L1 5312 5461 -869 1771 171 7 0 chr3 225787271 225787570 -1737008 + AluJb SINE Alu 3 303 -9 4654 207 64 99 chr3 225787570 225787692 -1736886 + L1MC1 LINE L1 5461 5586 -744 1195 65 0 0 chr3 225787692 225787847 -1736731 - AluY SINE Alu -7 304 150 3937 138 38 73 chr3 225787847 225788365 -1736213 + L1MC1 LINE L1 5576 6059 -274 2079 114 0 3 chr3 225788365 225788663 -1735915 - AluSx SINE Alu -15 297 1 3937 138 38 73 chr3 225788663 225788928 -1735650 + L1MC1 LINE L1 6059 6332 -1 32 0 0 0 chr3 225788932 225788964 -1735614 + AT_rich Low_complexity Low_complexity 1 32 0 2071 102 0 3 chr3 225789533 225789840 -1734738 + AluSx SINE Alu 1 306 0 497 264 35 17 chr3 225789847 225790021 -1734557 + MER53 DNA DNA 1 177 -12 270 0 0 0 chr3 225790963 225790993 -1733585 + (CA)n Simple_repeat Simple_repeat 1 30 0 2007 126 3 0 chr3 225791096 225791381 -1733197 - AluSx SINE Alu -26 286 1 356 306 100 58 chr3 225791770 225792061 -1732517 - L2 LINE L2 -3 3269 2967 720 264 92 45 chr3 225792510 225792962 -1731616 - L1ME LINE L1 -435 5686 5209 1618 295 124 21 chr3 225793202 225794054 -1730524 - L2 LINE L2 -1 3312 2340 1948 112 6 26 chr3 225794054 225794366 -1730212 + AluY SINE Alu 1 306 -5 1618 295 124 21 chr3 225794366 225794433 -1730145 - L2 LINE L2 -973 2340 2281 1489 145 67 28 chr3 225794464 225794747 -1729831 + AluJb SINE Alu 1 294 -18 2069 122 0 10 chr3 225794856 225795167 -1729411 - AluSg SINE Alu -2 308 1 25 0 0 0 chr3 225795197 225795222 -1729356 + AT_rich Low_complexity Low_complexity 1 25 0 239 284 74 0 chr3 225795299 225795380 -1729198 - L2 LINE L2 -17 3255 3169 498 312 116 9 chr3 225796064 225796279 -1728299 - MIR SINE MIR -24 238 1 2259 106 0 0 chr3 225796435 225796746 -1727832 + AluSx SINE Alu 1 311 -1 2053 110 0 29 chr3 225796773 225797082 -1727496 + AluSg1 SINE Alu 1 300 -9 282 280 16 144 chr3 225797142 225797392 -1727186 + LTR67 LTR ERVL 4 221 -336 2412 73 0 16 chr3 225798408 225798724 -1725854 + AluY SINE Alu 1 311 0 430 279 65 44 chr3 225798778 225799007 -1725571 + MLT1K LTR MaLR 344 577 -11 2227 93 10 0 chr3 225799443 225799745 -1724833 + AluSp SINE Alu 1 305 -8 3604 199 27 57 chr3 225799966 225800961 -1723617 + LTR5 LTR ERVK 5 969 0 338 239 35 62 chr3 225800985 225801098 -1723480 + MIR SINE MIR 126 235 -27 1832 109 102 0 chr3 225801658 225801942 -1722636 - AluSq SINE Alu 0 313 1 661 238 25 0 chr3 225802124 225802284 -1722294 - MIR3 SINE MIR -11 197 34 653 157 20 0 chr3 225804858 225804960 -1719618 - FLAM_A SINE Alu -18 124 21 864 173 37 47 chr3 225805047 225805238 -1719340 + MER53 DNA DNA 1 189 0 339 294 124 26 chr3 225805546 225805740 -1718838 + MIR SINE MIR 26 238 -24 212 287 180 0 chr3 225806222 225806344 -1718234 + MIR SINE MIR 10 149 -62 189 245 113 0 chr3 225806502 225806555 -1718023 + MIR SINE MIR 142 200 -62 595 245 28 37 chr3 225806556 225806682 -1717896 + L1MC1 LINE L1 6147 6272 -72 2238 95 3 0 chr3 225806682 225806978 -1717600 - AluSp SINE Alu -16 297 1 595 245 28 37 chr3 225806978 225807048 -1717530 + L1MC1 LINE L1 6272 6341 -3 2159 113 0 7 chr3 225807956 225808258 -1716320 - AluSx SINE Alu -12 300 1 1804 110 36 39 chr3 225808258 225808421 -1716157 - MER4A-int LTR ERV1 -4472 2126 1964 2073 125 3 10 chr3 225808421 225808733 -1715845 - AluSx SINE Alu -2 310 1 1804 110 36 39 chr3 225808733 225808933 -1715645 - MER4A-int LTR ERV1 -4634 1964 1764 1123 143 15 82 chr3 225808949 225809005 -1715573 - MER4A-int LTR ERV1 -5592 1166 1108 2336 89 0 3 chr3 225809005 225809319 -1715259 + AluSp SINE Alu 1 313 0 1123 143 15 82 chr3 225809319 225809605 -1714973 - MER4A-int LTR ERV1 -5650 1108 790 * 1449 93 13 42 chr3 225809602 225809838 -1714740 - MER4A-int LTR ERV1 -6341 417 189 * 1482 240 61 11 chr3 225809837 225810199 -1714379 - MER4A-int LTR ERV1 -4107 2224 1845 2481 124 47 68 chr3 225810262 225810914 -1713664 - MER4A-int LTR ERV1 -5760 838 1 1430 122 62 84 chr3 225810917 225811270 -1713308 - MER4A LTR ERV1 0 664 261 584 152 0 10 chr3 225811270 225811369 -1713209 - MER4A LTR ERV1 -566 98 1 567 177 26 9 chr3 225811797 225811910 -1712668 + MER50 LTR ERV1 459 573 -161 1935 152 3 41 chr3 225811910 225812225 -1712353 - AluSx SINE Alu -9 303 1 635 128 0 0 chr3 225812234 225812328 -1712250 - AluSp/q SINE Alu -17 296 203 721 153 243 30 chr3 225812373 225812575 -1712003 + LTR10A LTR ERV1 1 245 -364 925 97 0 0 chr3 225812575 225812688 -1711890 - AluSq/x SINE Alu -199 113 1 538 262 18 48 chr3 225812940 225813108 -1711470 - L1ME3 LINE L1 -1 6161 5999 662 164 23 0 chr3 225813152 225813280 -1711298 - AluJb SINE Alu 0 312 182 1409 189 17 10 chr3 225813281 225813583 -1710995 - L1ME3 LINE L1 -179 5983 5680 243 222 19 0 chr3 225813590 225813644 -1710934 + Tigger5 DNA MER2_type 1 55 -2268 * 473 209 38 0 chr3 225813636 225813741 -1710837 + Tigger5 DNA MER2_type 2215 2323 0 275 356 15 22 chr3 225813861 225813996 -1710582 + LTR16C LTR ERVL 304 437 -54 269 282 45 58 chr3 225814121 225814277 -1710301 - L2 LINE L2 -435 2879 2726 273 225 71 41 chr3 225814814 225814983 -1709595 + (CAGGG)n Simple_repeat Simple_repeat 2 175 0 223 260 57 40 chr3 225815701 225815878 -1708700 + (CAGGG)n Simple_repeat Simple_repeat 1 180 0 297 234 72 30 chr3 225815943 225816110 -1708468 + (CAGGG)n Simple_repeat Simple_repeat 2 175 0 1199 83 30 6 chr3 225816560 225816729 -1707849 + AluSg/x SINE Alu 126 298 -12 232 270 20 0 chr3 225816824 225816924 -1707654 + C-rich Low_complexity Low_complexity 1 102 0 2387 82 0 19 chr3 225817160 225817476 -1707102 + AluSx SINE Alu 3 312 0 425 285 66 40 chr3 225817527 225817755 -1706823 + MLT1K LTR MaLR 344 577 -11 2374 90 10 0 chr3 225818191 225818492 -1706086 + AluSp SINE Alu 1 304 -9 3676 202 32 60 chr3 225818715 225819708 -1704870 + LTR5 LTR ERVK 5 969 0 328 240 39 48 chr3 225819741 225819845 -1704733 + MIR SINE MIR 133 235 -27 1965 106 102 0 chr3 225820405 225820689 -1703889 - AluSq SINE Alu 0 313 1 638 238 25 0 chr3 225820871 225821031 -1703547 - MIR3 SINE MIR -11 197 34 622 126 21 0 chr3 225823954 225824049 -1700529 - FLAM_A SINE Alu -25 117 21 811 142 53 58 chr3 225824136 225824326 -1700252 + MER53 DNA DNA 1 189 0 286 289 109 23 chr3 225824634 225824762 -1699816 + MIR SINE MIR 26 164 -98 205 286 48 0 chr3 225825541 225825604 -1698974 + MIR SINE MIR 84 149 -113 186 245 113 0 chr3 225825762 225825815 -1698763 + MIR SINE MIR 142 200 -62 494 204 10 0 chr3 225825816 225825919 -1698659 + L1MC1 LINE L1 6147 6250 -83 2354 95 3 0 chr3 225825942 225826236 -1698342 - AluSp SINE Alu -18 295 1 992 125 0 19 chr3 225826734 225826894 -1697684 + AluSg/x SINE Alu 152 308 -2 544 267 97 11 chr3 225827889 225828065 -1696513 - MIR SINE MIR -66 196 6 1577 189 144 21 chr3 225828408 225828790 -1695788 - LTR38B LTR ERV1 -54 556 128 560 172 31 55 chr3 225828845 225829008 -1695570 - LTR38B LTR ERV1 -451 159 1 291 183 14 14 chr3 225830817 225830888 -1693690 + MER5A DNA MER1_type 2 72 -117 647 177 23 8 chr3 225830919 225831049 -1693529 - FLAM_C SINE Alu 0 133 2 2472 84 0 0 chr3 225831533 225831829 -1692749 - AluSx SINE Alu -16 296 1 711 296 10 29 chr3 225831914 225832219 -1692359 + L1ME LINE L1 5503 5759 -362 2192 95 32 3 chr3 225832223 225832508 -1692070 + AluSq SINE Alu 1 293 -20 320 0 0 82 chr3 225832546 225832595 -1691983 + (CA)n Simple_repeat Simple_repeat 2 46 0 2202 110 3 13 chr3 225833096 225833405 -1691173 - AluY SINE Alu -5 306 1 1035 101 45 25 chr3 225833407 225833605 -1690973 - MER4A-int LTR ERV1 -4633 1965 1764 * 1301 124 177 92 chr3 225833586 225833677 -1690901 - MER4A-int LTR ERV1 -5590 1168 1086 2430 90 0 3 chr3 225833677 225833987 -1690591 + AluSp SINE Alu 1 309 -4 1301 124 177 92 chr3 225833987 225834281 -1690297 - MER4A-int LTR ERV1 -5672 1086 790 * 1453 127 12 8 chr3 225834278 225834522 -1690056 - MER4A-int LTR ERV1 -6341 417 173 1452 240 61 11 chr3 225834517 225834879 -1689699 - MER4A-int LTR ERV1 -4107 2224 1845 * 2405 170 14 68 chr3 225834939 225835590 -1688988 - MER4A-int LTR ERV1 -5758 840 1 1430 122 62 84 chr3 225835593 225835946 -1688632 - MER4A LTR ERV1 0 664 261 598 141 0 10 chr3 225835946 225836045 -1688533 - MER4A LTR ERV1 -566 98 1 567 177 26 9 chr3 225836446 225836559 -1688019 + MER50 LTR ERV1 459 573 -161 1969 146 3 41 chr3 225836559 225836874 -1687704 - AluSx SINE Alu -9 303 1 635 128 0 0 chr3 225836883 225836977 -1687601 - AluSp/q SINE Alu -17 296 203 721 153 243 30 chr3 225837022 225837224 -1687354 + LTR10A LTR ERV1 1 245 -364 925 97 0 0 chr3 225837224 225837337 -1687241 - AluSq/x SINE Alu -199 113 1 538 262 18 48 chr3 225837589 225837757 -1686821 - L1ME3 LINE L1 -1 6161 5999 653 148 26 0 chr3 225837790 225837905 -1686673 - AluJb SINE Alu -13 299 182 1414 189 17 10 chr3 225837906 225838208 -1686370 - L1ME3 LINE L1 -179 5983 5680 243 222 19 0 chr3 225838215 225838269 -1686309 + Tigger5 DNA MER2_type 1 55 -2268 * 473 209 38 0 chr3 225838261 225838366 -1686212 + Tigger5 DNA MER2_type 2215 2323 0 292 348 15 22 chr3 225838486 225838621 -1685957 + LTR16C LTR ERVL 304 437 -54 281 295 39 51 chr3 225838746 225838902 -1685676 - L2 LINE L2 -435 2879 2726 203 234 70 53 chr3 225839137 225839308 -1685270 + (CAGGG)n Simple_repeat Simple_repeat 2 175 0 261 229 44 66 chr3 225839410 225839593 -1684985 + (CAGGG)n Simple_repeat Simple_repeat 2 180 0 248 231 71 41 chr3 225839642 225839811 -1684767 + (CAGGG)n Simple_repeat Simple_repeat 2 175 0 264 225 71 41 chr3 225839934 225840103 -1684475 + (CAGGG)n Simple_repeat Simple_repeat 2 175 0 301 233 70 29 chr3 225840143 225840315 -1684263 + (CAGGG)n Simple_repeat Simple_repeat 2 180 0 2263 98 0 7 chr3 225840478 225840784 -1683794 + AluSg SINE Alu 1 304 -6 533 274 103 11 chr3 225843426 225843601 -1680977 - MIR SINE MIR -66 196 6 340 272 112 14 chr3 225843811 225844040 -1680538 + MER41E LTR ERV1 54 427 -208 671 180 7 22 chr3 225844041 225844180 -1680398 - FLAM_C SINE Alu -5 138 2 834 208 48 0 chr3 225844453 225844621 -1679957 + MER58 DNA MER1_type 1 176 -2244 215 250 0 0 chr3 225845214 225845258 -1679320 - L3 LINE CR1 -10 1567 1524 1220 146 5 0 chr3 225845520 225845712 -1678866 + AluJo SINE Alu 120 312 0 739 143 0 0 chr3 225845720 225845846 -1678732 + L1MC5 LINE L1 4903 5028 -1118 2245 126 0 3 chr3 225845846 225846155 -1678423 + AluSx SINE Alu 1 308 -4 2363 195 12 105 chr3 225846157 225846343 -1678235 + L1MC5 LINE L1 5307 5509 -2533 2183 128 0 0 chr3 225846343 225846639 -1677939 + AluSc SINE Alu 1 296 -13 2363 195 12 105 chr3 225846639 225847211 -1677367 + L1MC5 LINE L1 5509 5994 -2048 * 2683 175 10 4 chr3 225846787 225847289 -1677289 + L1MB7 LINE L1 5570 6074 -110 1013 104 0 0 chr3 225847289 225847414 -1677164 + AluSq/x SINE Alu 1 125 -188 483 199 0 84 chr3 225847426 225847557 -1677021 + L1MB7 LINE L1 6058 6177 -7 252 310 26 0 chr3 225847561 225847677 -1676901 + GA-rich Low_complexity Low_complexity 2 120 0 485 276 49 57 chr3 225848396 225848642 -1675936 - MER112 DNA MER1_type -16 244 1 317 217 24 0 chr3 225848795 225848878 -1675700 + L2 LINE L2 2889 2973 -299 662 234 130 110 chr3 225848943 225849534 -1675044 + L1MC5 LINE L1 6989 7591 -370 1766 175 6 31 chr3 225849549 225849869 -1674709 - AluJo SINE Alu 0 312 1 326 207 33 66 chr3 225849904 225849971 -1674607 + L1MC5 LINE L1 7585 7648 -313 180 0 0 0 chr3 225849978 225849998 -1674580 + (TTAA)n Simple_repeat Simple_repeat 3 22 0 2203 92 0 11 chr3 225849998 225850273 -1674305 - AluSx SINE Alu -21 291 18 326 207 33 66 chr3 225850273 225850326 -1674252 + L1MC5 LINE L1 7648 7701 -260 261 242 21 21 chr3 225850340 225850435 -1674143 + L1MC5 LINE L1 7821 7915 -46 2325 109 3 0 chr3 225850452 225850754 -1673824 - AluSx SINE Alu -9 303 1 455 257 80 86 chr3 225850762 225851112 -1673466 + MER7A DNA MER2_type 1 346 0 2182 108 3 14 chr3 225851157 225851453 -1673125 + AluSx SINE Alu 1 293 -19 194 0 39 0 chr3 225851453 225851479 -1673099 + (GA)n Simple_repeat Simple_repeat 2 28 0 2246 127 3 0 chr3 225852295 225852602 -1671976 - AluSx SINE Alu -4 308 1 1739 201 47 23 chr3 225852608 225852846 -1671732 - L1MC/D LINE L1 -535 5707 5451 2177 148 0 0 chr3 225852846 225853151 -1671427 - AluSx SINE Alu -7 305 1 1739 201 47 23 chr3 225853151 225853355 -1671223 - L1MC/D LINE L1 -791 5451 5254 1017 152 178 17 chr3 225853369 225853599 -1670979 + Tigger3b DNA MER2_type 2 268 -963 371 125 62 0 chr3 225853601 225853665 -1670913 + Tigger3b DNA MER2_type 201 268 -963 371 125 62 0 chr3 225853667 225853731 -1670847 + Tigger3b DNA MER2_type 201 268 -963 371 125 62 0 chr3 225853733 225853797 -1670781 + Tigger3b DNA MER2_type 201 268 -963 358 141 62 0 chr3 225853799 225853863 -1670715 + Tigger3b DNA MER2_type 201 268 -963 368 125 62 0 chr3 225853865 225853929 -1670649 + Tigger3b DNA MER2_type 201 268 -963 2087 130 71 6 chr3 225853931 225854335 -1670243 + Tigger3b DNA MER2_type 201 765 -467 482 114 13 0 chr3 225854452 225854531 -1670047 - MADE1 DNA Mariner 0 80 1 952 340 131 14 chr3 225855441 225856438 -1668140 - L2 LINE L2 -910 2404 1286 2338 102 0 3 chr3 225856438 225856741 -1667837 + AluSx SINE Alu 1 302 -10 952 340 131 14 chr3 225856741 225856754 -1667824 - L2 LINE L2 -2028 1286 1276 1538 110 4 0 chr3 225857311 225857556 -1667022 - L1PA7 LINE L1 -971 5175 4930 6653 51 14 18 chr3 225857557 225858052 -1666526 + L1PA7 LINE L1 5190 5682 -472 2316 92 3 3 chr3 225858052 225858347 -1666231 - AluSc SINE Alu -14 295 1 6653 51 14 18 chr3 225858347 225858817 -1665761 + L1PA7 LINE L1 5682 6152 -2 240 311 97 61 chr3 225859935 225860131 -1664447 + L2 LINE L2 2910 3112 -160 2183 110 3 7 chr3 225860291 225860592 -1663986 + AluSx SINE Alu 1 300 -12 1293 98 65 42 chr3 226061926 226062141 -1462437 - AluSg/x SINE Alu -8 302 83 842 101 209 0 chr3 226062141 226062280 -1462298 - AluSq SINE Alu -63 250 83 306 342 36 0 chr3 226062379 226062490 -1462088 + LTR33 LTR ERVL 100 214 -307 299 318 21 43 chr3 226062706 226062939 -1461639 + LTR33 LTR ERVL 294 521 0 2152 111 0 36 chr3 226062995 226063301 -1461277 + AluSx SINE Alu 1 295 -17 3044 199 45 22 chr3 226063304 226063977 -1460601 - MER76 LTR ERV 0 688 1 552 188 18 0 chr3 226064037 226064149 -1460429 - Charlie5 DNA MER1_type -27 2585 2472 1658 109 5 5 chr3 226064160 226064381 -1460197 + AluSq SINE Alu 5 225 -88 666 231 98 62 chr3 226065750 226066006 -1458572 - L2 LINE L2 -3 3310 3046 1258 112 12 0 chr3 226067121 226067290 -1457288 + AluSg/x SINE Alu 127 297 -15 2322 102 0 16 chr3 226068057 226068361 -1456217 - AluSg SINE Alu -11 299 1 236 135 0 0 chr3 226068406 226068443 -1456135 + MLT1A1 LTR MaLR 1 37 -328 951 186 0 155 chr3 226068553 226068849 -1455729 + MLT1A1 LTR MaLR 116 365 0 907 198 87 55 chr3 226068907 226069160 -1455418 - MIR SINE MIR -1 261 1 1422 242 146 29 chr3 226069809 226070360 -1454218 - MLT1G LTR MaLR -6 584 13 2305 112 0 13 chr3 226071270 226071584 -1452994 - AluSg SINE Alu 0 310 1 2383 96 6 6 chr3 226074882 226075195 -1449383 + AluSq SINE Alu 1 313 0 349 371 35 21 chr3 226076078 226076221 -1448357 + L2 LINE L2 3127 3271 -1 530 283 106 22 chr3 226076849 226077029 -1447549 - MIR3 SINE MIR -4 204 10 535 249 16 74 chr3 226079420 226079609 -1444969 + MER5B DNA MER1_type 1 178 0 28 0 0 0 chr3 226079664 226079692 -1444886 + AT_rich Low_complexity Low_complexity 1 28 0 2422 89 0 0 chr3 226079796 226080089 -1444489 - AluSc SINE Alu -16 293 1 43054 34 3 2 chr3 226080891 226087020 -1437558 - L1PA4 LINE L1 -3 6152 16 186 296 124 101 chr3 226087324 226087493 -1437085 - L3b LINE CR1 -138 1445 1273 356 286 48 16 chr3 226087645 226087771 -1436807 - MIR3 SINE MIR -77 131 2 2212 117 10 0 chr3 226088841 226089140 -1435438 + AluSx SINE Alu 1 302 -10 253 279 81 0 chr3 226089894 226089980 -1434598 - L2 LINE L2 -257 3056 2964 400 271 132 32 chr3 226089983 226090017 -1434561 + MLT1J LTR MaLR 10 39 -472 2336 85 3 0 chr3 226090017 226090310 -1434268 + AluSx SINE Alu 1 294 -18 400 271 132 32 chr3 226090310 226090712 -1433866 + MLT1J LTR MaLR 39 511 0 435 230 97 34 chr3 226090750 226090909 -1433669 - MIR SINE MIR -64 144 30 2571 56 3 10 chr3 226091007 226091310 -1433268 - AluSp SINE Alu -12 301 1 2126 79 51 27 chr3 226091476 226091768 -1432810 - AluSq SINE Alu -14 299 1 501 94 0 0 chr3 226092372 226092436 -1432142 - AluJ/FLAM SINE Alu -238 74 11 216 307 89 0 chr3 226094426 226094527 -1430051 + L2 LINE L2 3192 3301 -12 2098 108 11 7 chr3 226095832 226096130 -1428448 + AluSx SINE Alu 11 312 0 1173 202 0 9 chr3 226096749 226096967 -1427611 + AluJb SINE Alu 85 300 -12 205 143 48 24 chr3 226096967 226097009 -1427569 + GA-rich Low_complexity Low_complexity 1 43 0 1910 148 7 10 chr3 226097642 226097945 -1426633 + AluJb SINE Alu 1 302 -10 184 346 67 10 chr3 226097996 226098100 -1426478 - MIR SINE MIR -67 141 32 184 203 77 119 chr3 226098085 226098228 -1426350 + L3 LINE CR1 1035 1171 -406 485 261 31 15 chr3 226099748 226099878 -1424700 - MIR SINE MIR -111 151 20 2226 112 10 13 chr3 226099887 226100200 -1424378 - AluSx SINE Alu 0 312 1 192 278 293 15 chr3 226100688 226100821 -1423757 - MIR3 SINE MIR -14 194 25 963 173 32 11 chr3 226101857 226102042 -1422536 + MER5A DNA MER1_type 1 189 0 487 146 136 0 chr3 226102731 226102834 -1421744 + L2 LINE L2 3099 3215 -98 476 99 0 14 chr3 226102835 226102906 -1421672 - MSTA LTR MaLR 0 428 359 2401 107 0 0 chr3 226102906 226103215 -1421363 + AluSx SINE Alu 1 309 -3 1167 227 25 27 chr3 226103271 226103771 -1420807 - LTR48B LTR ERV1 0 644 137 326 204 11 45 chr3 226103870 226103958 -1420620 + L1MCb LINE L1 668 752 -5293 1713 132 113 7 chr3 226103987 226104466 -1420112 - LTR29 LTR ERV1 -9 613 1 1401 183 78 6 chr3 226104466 226104800 -1419778 + L1MCb LINE L1 832 1189 -4856 1956 126 51 3 chr3 226104801 226105094 -1419484 + AluSc SINE Alu 1 307 -2 1815 181 66 3 chr3 226105104 226105452 -1419126 - MSTB LTR MaLR -56 370 1 389 198 10 69 chr3 226105465 226105566 -1419012 + L2 LINE L2 3219 3313 0 411 320 8 16 chr3 226106429 226106557 -1418021 - MIR SINE MIR -62 146 20 743 253 82 8 chr3 226106893 226107138 -1417440 - MLT1K LTR MaLR 0 588 326 2219 97 4 0 chr3 226107157 226107436 -1417142 - AluSx SINE Alu -32 280 1 2252 84 7 13 chr3 226107436 226107606 -1416972 - AluSc SINE Alu -8 301 132 2385 88 10 0 chr3 226107606 226107912 -1416666 - AluSp SINE Alu -3 310 2 1131 56 21 0 chr3 226107912 226108040 -1416538 - AluYb8 SINE Alu -183 135 5 2252 84 7 13 chr3 226107912 226108040 -1416538 - AluSc SINE Alu -177 132 5 268 237 18 114 chr3 226108260 226108374 -1416204 - MIR SINE MIR -63 145 43 303 109 0 0 chr3 226108428 226108474 -1416104 - L1MB7 LINE L1 -30 6154 6109 2375 86 3 3 chr3 226108666 226108969 -1415609 + AluSx SINE Alu 1 303 -9 382 333 115 21 chr3 226109145 226109424 -1415154 + L1M4 LINE L1 4253 4557 -1589 417 251 227 97 chr3 226109441 226109824 -1414754 + L3 LINE CR1 968 1400 -177 182 298 51 0 chr3 226109861 226109940 -1414638 - MIR SINE MIR -73 135 81 2283 116 3 0 chr3 226110715 226111026 -1413552 + AluSx SINE Alu 1 312 0 2143 91 0 47 chr3 226112398 226112738 -1411840 - AluSp SINE Alu 0 326 1 420 273 60 13 chr3 226113105 226113203 -1411375 + MIR SINE MIR 99 208 -54 2290 98 3 41 chr3 226113203 226113519 -1411059 + AluSp SINE Alu 1 304 -9 420 273 60 13 chr3 226113519 226113570 -1411008 + MIR SINE MIR 208 255 -7 214 315 140 28 chr3 226113629 226113772 -1410806 + MER91A DNA MER1_type 25 183 -13 207 324 0 22 chr3 226114712 226114894 -1409684 + (GGGTG)n Simple_repeat Simple_repeat 3 180 0 211 335 0 12 chr3 226115788 226115952 -1408626 + (GGGTG)n Simple_repeat Simple_repeat 3 164 0 267 322 0 11 chr3 226115995 226116172 -1408406 + (GGGTG)n Simple_repeat Simple_repeat 2 176 0 475 160 0 0 chr3 226116333 226116427 -1408151 + L1MA4 LINE L1 5926 6019 -281 346 125 102 0 chr3 226116433 226116521 -1408057 + L1MB3 LINE L1 6087 6183 0 1039 173 13 49 chr3 226117056 226117281 -1407297 + MER20 DNA MER1_type 3 219 0 2144 145 0 0 chr3 226118094 226118404 -1406174 + AluJb SINE Alu 1 310 -2 219 292 21 62 chr3 226119054 226119150 -1405428 + MIR3 SINE MIR 111 202 -6 226 234 131 58 chr3 226119298 226119435 -1405143 - L2 LINE L2 -5 3308 3162 2422 100 0 3 chr3 226120084 226120393 -1404185 - AluSg SINE Alu -1 309 2 227 337 35 79 chr3 226120451 226120653 -1403925 - L2 LINE L2 -47 3225 3033 808 278 28 8 chr3 226121464 226121716 -1402862 + Charlie8 DNA MER1_type 26 282 -2135 564 225 115 16 chr3 226121930 226122112 -1402466 - MIR3 SINE MIR -4 204 5 525 302 104 5 chr3 226122301 226122523 -1402055 + MIR SINE MIR 19 262 0 296 279 225 0 chr3 226122520 226122649 -1401929 - MIR3 SINE MIR -10 198 41 * 2134 216 53 26 chr3 226123147 226123193 -1401385 - L1M4 LINE L1 -1713 4433 4390 2002 151 0 0 chr3 226123193 226123519 -1401059 - AluJb SINE Alu 0 326 1 2134 216 53 26 chr3 226123519 226124095 -1400483 - L1M4 LINE L1 -1756 4390 3793 1729 158 9 65 chr3 226124107 226124448 -1400130 - L1MDa LINE L1 -6218 322 1 2315 92 0 0 chr3 226124567 226124882 -1399696 - AluSq SINE Alu 0 313 1 22 0 0 0 chr3 226124935 226124957 -1399621 + AT_rich Low_complexity Low_complexity 1 22 0 4117 102 15 88 chr3 226125209 226125389 -1399189 + LTR8 LTR ERV1 1 193 -498 2162 104 32 0 chr3 226125389 226125668 -1398910 - AluSq SINE Alu -23 290 3 4117 102 15 88 chr3 226125668 226126233 -1398345 + LTR8 LTR ERV1 193 691 0 1376 134 0 14 chr3 226126290 226126499 -1398079 - AluSg/x SINE Alu -21 289 84 1704 108 72 4 chr3 226126973 226127224 -1397354 - AluSx SINE Alu -44 268 1 720 298 160 13 chr3 226127894 226128344 -1396234 - L3 LINE CR1 -12 1565 1050 475 321 104 9 chr3 226128585 226128806 -1395772 - L3 LINE CR1 -489 1088 847 2446 64 7 0 chr3 226129183 226129479 -1395099 + AluSp SINE Alu 5 302 -11 303 299 102 24 chr3 226129927 226130094 -1394484 - MLT1J LTR MaLR -331 180 1 308 246 177 39 chr3 226130208 226130338 -1394240 - MER5B DNA MER1_type 0 178 31 739 234 23 51 chr3 226130363 226130619 -1393959 - L1MC5 LINE L1 -48 7913 7665 407 297 65 13 chr3 226130685 226130840 -1393738 + MER5A DNA MER1_type 22 184 -5 2283 97 13 7 chr3 226131303 226131613 -1392965 - AluSx SINE Alu 0 312 1 2212 114 0 0 chr3 226132480 226132778 -1391800 - AluSx SINE Alu -14 298 1 231 258 0 16 chr3 226133497 226133559 -1391019 - L2 LINE L2 -219 3053 2993 1704 120 44 0 chr3 226134284 226134558 -1390020 + L1MA4 LINE L1 6010 6295 -5 2238 146 5 47 chr3 226135426 226135830 -1388748 - MLT1B LTR MaLR 0 390 4 474 289 82 43 chr3 226136648 226136856 -1387722 - MIR SINE MIR -1 261 46 315 0 0 0 chr3 226137315 226137350 -1387228 + (TTTTG)n Simple_repeat Simple_repeat 1 35 0 2122 118 0 0 chr3 226137350 226137629 -1386949 - AluSx SINE Alu -33 279 1 1743 120 196 41 chr3 226138839 226139009 -1385569 + MSTA LTR MaLR 1 143 -285 2264 88 0 42 chr3 226139009 226139317 -1385261 + AluSp SINE Alu 1 295 -18 1743 120 196 41 chr3 226139317 226139514 -1385064 + MSTA LTR MaLR 143 425 -3 2372 95 7 0 chr3 226139830 226140126 -1384452 + AluSx SINE Alu 2 299 -13 193 303 42 35 chr3 226140738 226140880 -1383698 + L2 LINE L2 2917 3059 -213 241 240 0 0 chr3 226141005 226141055 -1383523 + GA-rich Low_complexity Low_complexity 4 53 0 2374 96 7 0 chr3 226141692 226141995 -1382583 - AluSx SINE Alu -7 305 1 896 155 43 37 chr3 226142139 226142290 -1382288 - MER53 DNA DNA 0 189 34 1990 154 0 3 chr3 226142290 226142603 -1381975 - AluJb SINE Alu 0 312 1 896 155 43 37 chr3 226142603 226142637 -1381941 - MER53 DNA DNA -155 34 2 2421 97 0 3 chr3 226142938 226143246 -1381332 - AluSc SINE Alu -2 307 1 262 293 75 46 chr3 226143267 226143441 -1381137 - MIR SINE MIR -75 187 9 939 289 95 27 chr3 226144120 226144521 -1380057 + L2 LINE L2 2264 2691 -623 281 235 15 15 chr3 226144736 226144804 -1379774 - MLT1C LTR MaLR 0 467 400 580 139 0 0 chr3 226144804 226144883 -1379695 + FRAM/FAM SINE Alu 1 78 -98 1320 228 86 18 chr3 226144884 226145278 -1379300 - MLT1C LTR MaLR -46 421 1 236 276 161 11 chr3 226145625 226145712 -1378866 - MIR SINE MIR -131 131 32 291 28 0 0 chr3 226145760 226145796 -1378782 + (CA)n Simple_repeat Simple_repeat 2 37 0 216 81 81 0 chr3 226146262 226146299 -1378279 + MIR SINE MIR 112 151 -57 2257 103 16 7 chr3 226146395 226146705 -1377873 + AluSq SINE Alu 1 313 0 247 293 98 45 chr3 226147061 226147194 -1377384 + MIR SINE MIR 73 212 -50 2425 105 0 0 chr3 226147779 226148083 -1376495 + AluSx SINE Alu 1 304 -8 244 236 14 14 chr3 226148264 226148336 -1376242 + MIR3 SINE MIR 87 158 -50 2301 110 3 22 chr3 226148519 226148838 -1375740 + AluSq SINE Alu 1 313 0 384 329 107 0 chr3 226150195 226150335 -1374243 - L2 LINE L2 -1 3271 3117 2513 81 0 0 chr3 226150941 226151238 -1373340 - AluSc SINE Alu -10 299 3 321 182 0 0 chr3 226152053 226152108 -1372470 + AluS SINE Alu 6 60 -240 1997 154 0 0 chr3 226152108 226152401 -1372177 + AluJb SINE Alu 10 302 -10 2259 87 7 0 chr3 226154196 226154482 -1370096 - AluSg SINE Alu -22 288 1 186 234 32 53 chr3 226155617 226155682 -1368896 - MIR SINE MIR -84 178 116 2124 120 7 0 chr3 226155859 226156151 -1368427 - AluSx SINE Alu -18 294 1 237 132 0 0 chr3 226156275 226156313 -1368265 + (ATG)n Simple_repeat Simple_repeat 2 39 0 307 277 27 36 chr3 226156344 226156456 -1368122 - MIR SINE MIR -41 221 111 463 222 130 0 chr3 226157072 226157180 -1367398 + FLAM_A SINE Alu 4 125 -8 528 281 144 0 chr3 226157254 226157414 -1367164 + MIR SINE MIR 8 190 -72 245 284 0 25 chr3 226157689 226157770 -1366808 + L2 LINE L2 2346 2424 -890 626 314 122 56 chr3 226158122 226158926 -1365652 + L2 LINE L2 2443 3313 0 585 211 0 8 chr3 226159432 226159560 -1365018 + LTR67 LTR ERVL 428 554 -3 183 239 22 0 chr3 226160069 226160115 -1364463 - MIR3 SINE MIR -9 199 153 361 307 20 46 chr3 226160118 226160271 -1364307 - MER5A DNA MER1_type -4 185 37 210 371 40 46 chr3 226160137 226160288 -1364290 + MER5A DNA MER1_type 35 184 -5 * 265 282 45 27 chr3 226160307 226160417 -1364161 - MIR SINE MIR -63 145 34 1905 124 48 7 chr3 226160500 226160791 -1363787 - AluSg SINE Alu -3 307 5 368 265 31 20 chr3 226160946 226161044 -1363534 + MIR SINE MIR 48 146 -62 338 255 49 0 chr3 226161681 226161783 -1362795 + MIR SINE MIR 42 148 -60 2128 100 3 3 chr3 226161784 226162075 -1362503 + AluSc SINE Alu 1 291 -18 863 110 124 7 chr3 226162552 226162697 -1361881 - FRAM SINE Alu -16 160 1 211 340 82 0 chr3 226162717 226162814 -1361764 - MIR3 SINE MIR -33 175 71 267 31 0 0 chr3 226162817 226162849 -1361729 + (CAAA)n Simple_repeat Simple_repeat 2 33 0 21 82 0 0 chr3 226163558 226163607 -1360971 + GC_rich Low_complexity Low_complexity 1 49 0 468 242 97 0 chr3 226164176 226164300 -1360278 + MIR SINE MIR 83 218 -44 831 172 0 8 chr3 226164339 226164473 -1360105 + FLAM_A SINE Alu 1 133 0 305 310 7 29 chr3 226164480 226164620 -1359958 - MIR SINE MIR -64 144 32 304 232 24 12 chr3 226164755 226164837 -1359741 + GA-rich Low_complexity Low_complexity 3 85 0 1910 106 92 0 chr3 226164923 226165196 -1359382 + AluSx SINE Alu 1 298 -14 2059 124 0 29 chr3 226165199 226165513 -1359065 + AluSx SINE Alu 1 305 -7 567 299 99 9 chr3 226165745 226165966 -1358612 + MIR SINE MIR 19 259 -3 1416 226 102 30 chr3 226166041 226166511 -1358067 - MLT1J LTR MaLR -4 507 4 229 405 8 0 chr3 226167626 226167752 -1356826 + L2 LINE L2 2965 3091 -181 2172 89 0 7 chr3 226168009 226168302 -1356276 + AluSg1 SINE Alu 1 291 -18 367 314 60 34 chr3 226168798 226169113 -1355465 - MIR SINE MIR -12 250 10 213 39 0 0 chr3 226171111 226171137 -1353441 + (CCTG)n Simple_repeat Simple_repeat 3 28 0 2055 109 10 40 chr3 226171262 226171566 -1353012 + AluSx SINE Alu 1 295 -17 532 322 0 0 chr3 226171690 226171833 -1352745 + MIR SINE MIR 50 192 -70 453 328 108 28 chr3 226171974 226172297 -1352281 + L3 LINE CR1 1140 1488 -89 415 301 32 0 chr3 226173613 226173751 -1350827 + MIR SINE MIR 1 145 -63 2176 109 3 3 chr3 226173778 226174090 -1350488 - AluSx SINE Alu 0 312 1 845 74 8 0 chr3 226175225 226175347 -1349231 + (TG)n Simple_repeat Simple_repeat 1 123 0 1992 118 0 0 chr3 226175577 226175856 -1348722 + AluSx SINE Alu 16 294 -18 216 173 0 77 chr3 226179327 226179379 -1345199 + (CACCC)n Simple_repeat Simple_repeat 4 51 0 209 277 84 12 chr3 226180180 226180263 -1344315 + L2 LINE L2 3225 3313 0 1050 97 7 0 chr3 226180362 226180506 -1344072 + AluSg/x SINE Alu 124 268 -44 222 37 0 0 chr3 226180506 226180533 -1344045 + (CA)n Simple_repeat Simple_repeat 1 27 0 646 290 16 6 chr3 226181461 226181644 -1342934 - MIR SINE MIR -50 212 28 266 253 13 27 chr3 226183493 226183568 -1341010 - MIR SINE MIR -118 144 71 2050 110 0 10 chr3 226183575 226183865 -1340713 + AluSx SINE Alu 1 287 -25 207 0 0 0 chr3 226183865 226183888 -1340690 + (TTAA)n Simple_repeat Simple_repeat 3 25 0 227 210 48 16 chr3 226184355 226184417 -1340161 + GA-rich Low_complexity Low_complexity 2 65 0 258 303 120 46 chr3 226185536 226185711 -1338867 + L2 LINE L2 1898 2085 -1229 290 367 50 22 chr3 226186414 226186594 -1337984 + L2 LINE L2 3088 3272 0 485 229 109 62 chr3 226187312 226187504 -1337074 - Charlie8 DNA MER1_type -2216 201 1 201 371 43 54 chr3 226187540 226187726 -1336852 + MIR SINE MIR 35 218 -44 363 332 116 30 chr3 226187764 226187996 -1336582 - L2 LINE L2 -2 3270 3019 189 283 43 0 chr3 226188182 226188228 -1336350 - L2 LINE L2 -16 3256 3209 273 288 240 0 chr3 226188767 226188892 -1335686 + L3 LINE CR1 1281 1435 -142 180 351 18 0 chr3 226188973 226189030 -1335548 + L3 LINE CR1 1484 1541 -36 485 284 185 4 chr3 226191372 226191604 -1332974 - L2 LINE L2 -1171 2143 1870 315 243 125 21 chr3 226191789 226191933 -1332645 + L2 LINE L2 2806 2964 -350 * 641 323 94 23 chr3 226191917 226192351 -1332227 + L2 LINE L2 2848 3312 -1 259 370 40 44 chr3 226192403 226192676 -1331902 - L2 LINE L2 -1526 1788 1517 385 301 85 0 chr3 226192915 226193068 -1331510 - MIR3 SINE MIR -1 207 42 276 262 47 47 chr3 226193336 226193496 -1331082 + L1MB8 LINE L1 5556 5718 -403 1558 123 31 0 chr3 226193496 226193723 -1330855 + MER46A DNA MER2_type 3 236 0 276 262 47 47 chr3 226193723 226193734 -1330844 + L1MB8 LINE L1 5717 5727 -394 816 230 4 63 chr3 226194081 226194320 -1330258 + MLT1J LTR MaLR 5 229 -282 1419 257 55 27 chr3 226194323 226194572 -1330006 + L1MC4a LINE L1 5409 5649 -2159 1633 115 0 0 chr3 226194572 226194798 -1329780 + AluSq SINE Alu 84 309 -4 1419 257 55 27 chr3 226194798 226195074 -1329504 + L1MC4a LINE L1 5649 5949 -1859 2207 108 0 3 chr3 226195309 226195614 -1328964 + AluSx SINE Alu 1 304 -8 411 73 0 0 chr3 226195614 226195669 -1328909 + (TA)n Simple_repeat Simple_repeat 2 56 0 1064 232 46 23 chr3 226195669 226195975 -1328603 + L1MB8 LINE L1 5781 6093 -85 314 358 57 41 chr3 226196069 226196385 -1328193 + L2 LINE L2 2920 3240 -32 308 94 19 0 chr3 226196397 226196450 -1328128 + (TGGA)n Simple_repeat Simple_repeat 3 56 0 238 357 24 0 chr3 226196877 226196961 -1327617 + MIR SINE MIR 38 123 -85 192 219 229 19 chr3 226196947 226197052 -1327526 - MIR3 SINE MIR -37 171 45 * 2090 104 7 7 chr3 226197073 226197372 -1327206 - AluSp SINE Alu -14 299 1 514 96 0 58 chr3 226197401 226197505 -1327073 - L1MDa LINE L1 -5679 861 764 399 299 30 8 chr3 226197867 226198001 -1326577 + MLT1K LTR MaLR 263 399 -189 4748 188 30 6 chr3 226198210 226199060 -1325518 - L1MD1 LINE L1 -3 6239 5359 2005 167 76 6 chr3 226199060 226199401 -1325177 - MLT1A1 LTR MaLR 0 365 1 4748 188 30 6 chr3 226199401 226199617 -1324961 - L1MD1 LINE L1 -883 5359 5150 347 327 9 9 chr3 226199617 226199724 -1324854 + MIR SINE MIR 33 139 -69 186 319 0 14 chr3 226199772 226199841 -1324737 - MIR SINE MIR -183 79 12 1484 219 185 28 chr3 226199842 226199959 -1324619 - L1MD1 LINE L1 -996 5150 5053 1936 139 3 3 chr3 226199959 226200254 -1324324 + AluJb SINE Alu 1 295 -17 1484 219 185 28 chr3 226200254 226200753 -1323825 - L1MD1 LINE L1 -1093 5053 4437 1729 132 0 11 chr3 226200754 226201034 -1323544 + AluSq SINE Alu 1 277 -36 267 147 3 0 chr3 226201140 226201201 -1323377 + L1MC4a LINE L1 7760 7808 0 2188 98 10 0 chr3 226201209 226201506 -1323072 + AluSx SINE Alu 1 300 -12 332 278 175 24 chr3 226202016 226202142 -1322436 + MIR3 SINE MIR 16 160 -48 360 322 206 3 chr3 226202930 226203222 -1321356 + L2 LINE L2 2614 2964 -350 418 338 22 0 chr3 226203322 226203461 -1321117 + L2 LINE L2 3169 3310 -3 2345 87 0 0 chr3 226203923 226204235 -1320343 + AluSx SINE Alu 1 312 0 230 208 0 19 chr3 226205237 226205290 -1319288 + Charlie8 DNA MER1_type 1377 1428 -989 5282 94 16 9 chr3 226206283 226207057 -1317521 - L1MA2 LINE L1 0 6304 5526 2137 243 194 6 chr3 226207276 226208284 -1316294 + L2 LINE L2 2107 3307 -6 2018 130 0 0 chr3 226208288 226208572 -1316006 - AluSx SINE Alu -28 284 1 2457 66 0 0 chr3 226208603 226208904 -1315674 + AluSc SINE Alu 1 301 -8 610 227 31 174 chr3 226208904 226209261 -1315317 - L2 LINE L2 -572 2742 2437 217 374 8 46 chr3 226209678 226209809 -1314769 + L2 LINE L2 3143 3268 -4 180 0 0 0 chr3 226210603 226210623 -1313955 + (GGA)n Simple_repeat Simple_repeat 1 20 0 264 294 34 17 chr3 226210669 226210788 -1313790 + MIR SINE MIR 23 143 -65 2236 75 10 0 chr3 226211740 226212034 -1312544 + AluSx SINE Alu 1 297 -15 534 155 10 10 chr3 226212251 226212348 -1312230 + MER4A LTR ERV1 2 98 -566 * 1749 142 35 22 chr3 226212344 226212689 -1311889 + MER4A LTR ERV1 257 664 0 1502 153 109 0 chr3 226212817 226213092 -1311486 + AluSx SINE Alu 1 305 -7 413 287 88 91 chr3 226213620 226213916 -1310662 + LTR16C LTR ERVL 123 417 -74 2338 77 10 0 chr3 226214356 226214654 -1309924 - AluSq SINE Alu -12 301 1 390 187 13 13 chr3 226214877 226214952 -1309626 + LTR16C LTR ERVL 417 491 0 4666 50 26 0 chr3 226215478 226216054 -1308524 + LTR10C LTR ERV1 1 591 0 580 146 21 0 chr3 226216056 226216152 -1308426 + MER4A LTR ERV1 1 98 -566 1549 120 70 66 chr3 226216152 226216494 -1308084 + MER4A LTR ERV1 263 664 0 2628 115 83 51 chr3 226216497 226217019 -1307559 + MER4A-int LTR ERV1 1 613 -5985 293 184 0 53 chr3 226217055 226217131 -1307447 + MER4A-int LTR ERV1 752 823 -5775 197 33 33 0 chr3 226217133 226217163 -1307415 + (CAA)n Simple_repeat Simple_repeat 2 32 0 1376 252 66 9 chr3 226217211 226217560 -1307018 + MER4A-int LTR ERV1 1856 2224 -4107 4553 122 25 14 chr3 226217579 226218527 -1306051 + MER4A-int LTR ERV1 198 1178 -5420 758 121 48 30 chr3 226218523 226218689 -1305889 + MER4A-int LTR ERV1 1756 1924 -4674 * 536 83 24 12 chr3 226218684 226218768 -1305810 - MER4B-int LTR ERV1 -6472 286 202 * 583 153 20 0 chr3 226218769 226218867 -1305711 - LTR8 LTR ERV1 -591 100 1 15966 118 60 28 chr3 226218867 226219174 -1305404 + MER4A-int LTR ERV1 1862 2158 -4440 2121 119 7 0 chr3 226219174 226219476 -1305102 + AluSx SINE Alu 1 304 -8 15966 118 60 28 chr3 226219476 226220269 -1304309 + MER4A-int LTR ERV1 2158 2924 -3674 2004 113 3 0 chr3 226220269 226220580 -1303998 - AluSp SINE Alu 0 312 1 15966 118 60 28 chr3 226220580 226222617 -1301961 + MER4A-int LTR ERV1 2924 6598 0 676 134 0 0 chr3 226222619 226222716 -1301862 + MER4A LTR ERV1 2 98 -566 1712 138 5 57 chr3 226222716 226223078 -1301500 + MER4A LTR ERV1 261 662 -2 522 286 50 20 chr3 226224310 226224509 -1300069 - MIR SINE MIR -26 236 32 2052 128 28 92 chr3 226224808 226225197 -1299381 + THE1B LTR MaLR 1 364 0 11519 101 16 2 chr3 226225197 226226755 -1297823 + THE1B-int LTR MaLR 1 1580 0 2060 154 33 33 chr3 226226755 226227119 -1297459 + THE1B LTR MaLR 1 364 0 718 211 8 0 chr3 226227138 226227261 -1297317 + AluJo SINE Alu 1 124 -178 874 167 0 48 chr3 226227264 226227284 -1297294 + AluJo SINE Alu 129 148 -164 4990 82 9 11 chr3 226227284 226227952 -1296626 + PABL_B LTR ERV1 1 667 0 874 167 0 48 chr3 226227952 226228117 -1296461 + AluJo SINE Alu 148 305 -7 249 156 133 0 chr3 226229101 226229146 -1295432 - MLT2D LTR ERVL -126 288 238 2953 138 47 6 chr3 226229185 226229670 -1294908 + ERVL-D LTR ERVL 5085 5589 -175 2032 109 17 30 chr3 226229671 226230021 -1294557 - MER4A LTR ERV1 0 664 261 756 71 0 10 chr3 226230021 226230120 -1294458 - MER4A LTR ERV1 -566 98 1 940 187 6 28 chr3 226230120 226230302 -1294276 + ERVL-D LTR ERVL 5587 5764 0 797 191 75 27 chr3 226230302 226230330 -1294248 + Ricksha DNA DNA 345 381 -2865 699 224 40 17 chr3 226230441 226230615 -1293963 + LTR28 LTR ERV1 1 178 -842 * 1015 225 101 66 chr3 226230587 226231013 -1293565 + LTR27 LTR ERV1 192 632 -4 1190 228 50 58 chr3 226231020 226231270 -1293308 + MLT2D LTR ERVL 59 310 -104 3695 103 12 30 chr3 226231270 226231834 -1292744 - MER41A LTR ERV1 0 554 1 1190 228 50 58 chr3 226231834 226231892 -1292686 + MLT2D LTR ERVL 310 366 -48 453 36 0 0 chr3 226231892 226231947 -1292631 + (CA)n Simple_repeat Simple_repeat 1 55 0 1190 228 50 58 chr3 226231947 226231996 -1292582 + MLT2D LTR ERVL 366 414 0 185 327 0 0 chr3 226232174 226232229 -1292349 - L2 LINE L2 -92 3180 3126 252 322 97 47 chr3 226234074 226234404 -1290174 + L1ME LINE L1 4133 4445 -1701 2134 110 7 0 chr3 226234404 226234714 -1289864 + AluSp SINE Alu 1 312 -1 252 322 97 47 chr3 226234714 226235533 -1289045 + L1ME LINE L1 4445 5391 -755 501 220 152 6 chr3 226236058 226236237 -1288341 + L1ME LINE L1 5602 5805 -316 2346 94 0 0 chr3 226237711 226238020 -1286558 + AluSx SINE Alu 1 309 -3 203 162 0 27 chr3 226238067 226238104 -1286474 + MIR SINE MIR 62 97 -111 2198 115 0 0 chr3 226238192 226238497 -1286081 - AluSx SINE Alu -7 305 1 2163 104 7 3 chr3 226239164 226239473 -1285105 - AluSg SINE Alu 0 310 1 1924 135 0 10 chr3 226239830 226240133 -1284445 - AluSx SINE Alu -12 300 1 1578 254 95 36 chr3 226240630 226240963 -1283615 - L2 LINE L2 -1 3312 3000 698 253 17 0 chr3 226240963 226241137 -1283441 - MER69A DNA AcHobo 0 177 1 1578 254 95 36 chr3 226241137 226241320 -1283258 - L2 LINE L2 -313 3000 2829 1479 159 16 0 chr3 226241320 226241578 -1283000 - AluJb SINE Alu -50 262 1 1578 254 95 36 chr3 226241578 226241926 -1282652 - L2 LINE L2 -484 2829 2395 1889 118 0 14 chr3 226241926 226242215 -1282363 - AluSx SINE Alu -8 304 20 343 37 0 37 chr3 226242315 226242369 -1282209 + AluY SINE Alu 249 300 0 1047 253 72 81 chr3 226242376 226242799 -1281779 - L1MEc LINE L1 -4427 1969 1553 516 233 23 0 chr3 226242799 226242928 -1281650 - FLAM_A SINE Alu -1 132 1 1047 253 72 81 chr3 226242928 226243223 -1281355 - L1MEc LINE L1 -4843 1553 1257 23 0 0 0 chr3 226243369 226243392 -1281186 + AT_rich Low_complexity Low_complexity 1 23 0 402 200 0 35 chr3 226243430 226243515 -1281063 + FLAM_A SINE Alu 45 126 -16 1608 164 33 10 chr3 226243528 226243833 -1280745 + AluJo SINE Alu 1 312 0 272 269 15 15 chr3 226243884 226244014 -1280564 + (TA)n Simple_repeat Simple_repeat 2 131 0 342 295 110 0 chr3 226244103 226244150 -1280428 + L1MC4 LINE L1 5262 5302 -2506 2035 113 0 23 chr3 226244150 226244481 -1280097 + AluSg SINE Alu 1 310 0 342 295 110 0 chr3 226244481 226244633 -1279945 + L1MC4 LINE L1 5302 5483 -2325 332 299 10 0 chr3 226244636 226244733 -1279845 - Zaphod DNA AcHobo -2 4029 3932 1136 137 44 5 chr3 226244733 226244938 -1279640 + AluJo SINE Alu 1 213 -99 329 293 24 73 chr3 226245049 226245172 -1279406 - L1MC4 LINE L1 -1340 6702 6586 * 413 341 0 22 chr3 226245065 226245200 -1279378 + L1MC4 LINE L1 6613 6744 -1298 246 167 200 0 chr3 226245891 226245951 -1278627 + L2 LINE L2 3193 3264 -8 224 252 252 7 chr3 226246203 226246272 -1278306 + L2 LINE L2 332 383 -2931 2057 106 0 0 chr3 226246272 226246581 -1277997 - AluSg SINE Alu 0 309 1 224 252 252 7 chr3 226246581 226246653 -1277925 + L2 LINE L2 383 509 -2805 1444 280 82 34 chr3 226246653 226247652 -1276926 - HERV16 LTR ERVL -2932 2064 919 2241 91 0 7 chr3 226248437 226248745 -1275833 + AluSx SINE Alu 1 306 -6 2740 148 26 9 chr3 226248748 226249201 -1275377 + LTR32 LTR ERVL 11 471 0 1957 116 6 42 chr3 226249229 226249540 -1275038 - AluSq SINE Alu -13 300 1 750 188 12 61 chr3 226250191 226250251 -1274327 - MER5B DNA MER1_type -3 175 114 2481 64 3 3 chr3 226250251 226250549 -1274029 + AluSg SINE Alu 1 298 -12 750 188 12 61 chr3 226250549 226250653 -1273925 - MER5B DNA MER1_type -64 114 19 311 280 55 11 chr3 226258340 226258553 -1266025 + L2 LINE L2 2748 2974 -339 184 356 59 45 chr3 226258561 226258783 -1265795 + L2 LINE L2 2849 3073 -199 283 128 0 0 chr3 226258877 226258924 -1265654 + MADE1 DNA Mariner 1 47 -33 605 277 21 41 chr3 226259912 226259945 -1264633 + L2 LINE L2 3077 3109 -204 2024 152 3 13 chr3 226259945 226260260 -1264318 - AluJb SINE Alu 0 312 1 605 277 21 41 chr3 226260260 226260468 -1264110 + L2 LINE L2 3109 3313 0 967 239 60 21 chr3 226260819 226261150 -1263428 - L1M4 LINE L1 -2010 4136 3793 1729 158 9 65 chr3 226261162 226261503 -1263075 - L1MDa LINE L1 -6218 322 1 648 72 0 12 chr3 226261622 226261728 -1262850 - AluSp/q SINE Alu 0 313 210 204 282 0 27 chr3 226262191 226262301 -1262277 + C-rich Low_complexity Low_complexity 5 111 0 204 231 0 22 chr3 226262317 226262451 -1262127 + C-rich Low_complexity Low_complexity 2 132 0 223 287 46 35 chr3 226264910 226264997 -1259581 + MIR SINE MIR 171 258 -4 548 184 136 0 chr3 226265591 226265694 -1258884 + FLAM_C SINE Alu 1 117 -16 1211 168 55 0 chr3 226266486 226266688 -1257890 + AluJb SINE Alu 85 297 -15 551 99 0 0 chr3 226266930 226267001 -1257577 - FLAM_A SINE Alu -24 118 48 2066 107 4 4 chr3 226267574 226267868 -1256710 - AluY SINE Alu 0 306 13 633 106 12 0 chr3 226267871 226267956 -1256622 + AluSc SINE Alu 90 175 -134 322 102 36 22 chr3 226268056 226268124 -1256454 - Alu SINE Alu -253 50 2 306 301 146 16 chr3 226268290 226268413 -1256165 + MIR3 SINE MIR 25 163 -45 494 250 47 0 chr3 226268903 226269031 -1255547 + MER94 DNA DNA 1 134 0 1991 120 4 0 chr3 226269313 226269588 -1254990 - AluSg SINE Alu -34 276 1 2489 60 0 7 chr3 226270636 226270938 -1253640 - AluY SINE Alu -11 300 1 1225 161 157 8 chr3 226271222 226271477 -1253101 - AluSg1 SINE Alu -12 297 5 7957 42 6 14 chr3 226272502 226274013 -1250565 - SVA Other Other -839 1386 4 248 322 55 20 chr3 226275155 226275301 -1249277 + MIR SINE MIR 71 221 -41 1867 109 0 12 chr3 226275412 226275668 -1248910 - AluSx SINE Alu 0 312 60 443 89 0 0 chr3 226275719 226275775 -1248803 - AluSx SINE Alu -253 57 2 648 177 33 13 chr3 226276209 226276237 -1248341 - L1MC2 LINE L1 -211 6133 6107 2322 105 0 0 chr3 226276237 226276533 -1248045 - AluSx SINE Alu -16 296 1 648 177 33 13 chr3 226276533 226276670 -1247908 - L1MC2 LINE L1 -237 6107 5993 399 171 392 13 chr3 226276651 226276809 -1247769 + L1 LINE L1 2678 2895 -3251 * 316 309 159 0 chr3 226277381 226277507 -1247071 - MER91A DNA MER1_type -50 146 1 237 247 176 0 chr3 226277572 226277657 -1246921 + L2 LINE L2 3168 3267 -5 185 180 20 0 chr3 226277694 226277744 -1246834 + (TGGA)n Simple_repeat Simple_repeat 2 52 0 2275 104 3 0 chr3 226279831 226280128 -1244450 - AluSx SINE Alu -14 298 1 4070 134 26 114 chr3 226280128 226280647 -1243931 + L1MA3 LINE L1 4085 4473 -1673 324 0 0 0 chr3 226280647 226280683 -1243895 + (CA)n Simple_repeat Simple_repeat 1 36 0 4070 134 26 114 chr3 226280683 226281181 -1243397 + L1MA3 LINE L1 4473 5013 -1133 2080 109 4 0 chr3 226281183 226281450 -1243128 + AluSq SINE Alu 35 302 -11 21 36 0 0 chr3 226281572 226281600 -1242978 + AT_rich Low_complexity Low_complexity 1 28 0 737 171 0 0 chr3 226281605 226281722 -1242856 - AluJb SINE Alu -194 118 2 777 197 0 7 chr3 226281907 226282044 -1242534 + AluSg/x SINE Alu 172 307 -5 6407 124 38 2 chr3 226282044 226283291 -1241287 + L1MA3 LINE L1 5007 6305 0 2170 124 6 13 chr3 226283293 226283607 -1240971 + AluSx SINE Alu 1 312 0 24 0 0 0 chr3 226283607 226283631 -1240947 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 226283860 226283888 -1240690 + AT_rich Low_complexity Low_complexity 1 28 0 669 155 0 16 chr3 226283898 226284027 -1240551 + L1MA7 LINE L1 5990 6116 -175 717 217 0 0 chr3 226284034 226284163 -1240415 - FLAM_A SINE Alu 0 133 5 792 145 23 0 chr3 226284181 226284312 -1240266 + L1PA16 LINE L1 6025 6158 -8 1074 138 38 0 chr3 226284357 226284516 -1240062 + AluSg/x SINE Alu 145 309 -1 300 77 0 39 chr3 226284516 226284568 -1240010 + L1MA7 LINE L1 6129 6178 -113 4041 149 30 26 chr3 226284618 226285342 -1239236 - LTR8A LTR ERV1 0 727 1 1922 123 3 19 chr3 226285365 226285716 -1238862 - MER4A LTR ERV1 0 664 261 556 122 0 20 chr3 226285718 226285816 -1238762 - MER4A LTR ERV1 -568 96 1 16076 98 55 37 chr3 226285817 226287290 -1237288 - MER4A-int LTR ERV1 0 6598 5054 2178 133 0 0 chr3 226287290 226287591 -1236987 - AluSg SINE Alu -9 301 1 16076 98 55 37 chr3 226287591 226288831 -1235747 - MER4A-int LTR ERV1 -1544 5054 3837 1153 199 40 31 chr3 226288830 226289157 -1235421 - MER4A-int LTR ERV1 -2917 3681 3352 * 1404 128 0 10 chr3 226289157 226289353 -1235225 - AluSx SINE Alu -118 194 1 22 35 0 0 chr3 226289410 226289439 -1235139 + AT_rich Low_complexity Low_complexity 1 29 0 4100 161 41 81 chr3 226289449 226290662 -1233916 - L1MA9 LINE L1 0 6312 5152 411 249 124 23 chr3 226291607 226291784 -1232794 - MER3 DNA MER1_type -14 195 1 2068 86 14 4 chr3 226292127 226292443 -1232135 + AluSx SINE Alu 1 319 0 871 215 79 23 chr3 226292485 226292750 -1231828 - AluJo SINE Alu -11 301 22 1425 162 0 0 chr3 226292873 226293077 -1231501 - AluJo SINE Alu -108 204 1 239 309 50 43 chr3 226294208 226294347 -1230231 + MIR SINE MIR 110 249 -13 2236 105 27 0 chr3 226296724 226297020 -1227558 + AluSx SINE Alu 1 304 -8 216 244 0 39 chr3 226299364 226299442 -1225136 + (CCCCG)n Simple_repeat Simple_repeat 2 76 0 188 229 0 0 chr3 226299773 226299808 -1224770 + MER5B DNA MER1_type 115 149 -29 839 144 7 0 chr3 226300001 226300140 -1224438 - AluJo SINE Alu -172 140 1 323 235 78 26 chr3 226300406 226300559 -1224019 - L1ME LINE L1 -356 5765 5605 778 99 0 0 chr3 226300620 226300731 -1223847 - AluSp/q SINE Alu -17 296 186 382 150 0 0 chr3 226300731 226300803 -1223775 + AluY SINE Alu 215 274 -27 1407 298 47 25 chr3 226301235 226302226 -1222352 - L1ME1 LINE L1 -172 5994 4978 245 316 84 19 chr3 226302798 226302953 -1221625 + L2 LINE L2 2702 2866 -448 7432 69 5 20 chr3 226303111 226304115 -1220463 - LTR13 LTR ERVK 0 1007 19 1669 144 33 11 chr3 226304115 226304386 -1220192 + AluSx SINE Alu 11 287 -25 321 290 102 37 chr3 226304417 226304913 -1219665 + L1ME LINE L1 5296 5823 -347 233 176 0 0 chr3 226305036 226305087 -1219491 + Alu SINE Alu 248 298 -4 201 94 0 0 chr3 226306875 226306907 -1217671 + (GAA)n Simple_repeat Simple_repeat 3 34 0 333 0 0 0 chr3 226307692 226307729 -1216849 + (TTTC)n Simple_repeat Simple_repeat 2 38 0 24 0 0 0 chr3 226308003 226308027 -1216551 + AT_rich Low_complexity Low_complexity 1 24 0 300 280 55 11 chr3 226313863 226314076 -1210502 + L2 LINE L2 2748 2974 -339 180 360 54 40 chr3 226314084 226314306 -1210272 + L2 LINE L2 2849 3073 -199 293 130 93 0 chr3 226314400 226314454 -1210124 + MADE1 DNA Mariner 1 59 -21 562 277 21 41 chr3 226315435 226315468 -1209110 + L2 LINE L2 3077 3109 -204 1909 152 3 13 chr3 226315468 226315783 -1208795 - AluJb SINE Alu 0 312 1 562 277 21 41 chr3 226315783 226315991 -1208587 + L2 LINE L2 3109 3313 0 1028 190 63 0 chr3 226316275 226316480 -1208098 - AluJb SINE Alu -10 302 85 543 184 136 0 chr3 226317272 226317375 -1207203 - FLAM_C SINE Alu -16 117 1 226 287 46 35 chr3 226317969 226318056 -1206522 - MIR SINE MIR -4 258 171 204 231 0 22 chr3 226320509 226320643 -1203935 + G-rich Low_complexity Low_complexity 2 132 0 204 282 0 27 chr3 226320659 226320769 -1203809 + G-rich Low_complexity Low_complexity 5 111 0 1349 151 49 3 chr3 226321190 226321475 -1203103 + AluJb SINE Alu 1 298 -14 2420 61 3 3 chr3 226321482 226321794 -1202784 + AluSp SINE Alu 1 312 -1 260 200 114 0 chr3 226322975 226323045 -1201533 + MER5A DNA MER1_type 47 124 -65 589 271 133 37 chr3 226325475 226325888 -1198690 + MLT1D LTR MaLR 30 457 -10 422 309 113 0 chr3 226326575 226326779 -1197799 - L1ME LINE L1 -311 5810 5584 413 307 49 18 chr3 226328920 226329083 -1195495 + L1MEd LINE L1 922 1089 -5030 1524 180 70 6 chr3 226329126 226329453 -1195125 - MLT1A1 LTR MaLR -11 354 7 409 214 10 10 chr3 226329483 226329581 -1194997 + MLT1B LTR MaLR 76 173 -217 645 215 0 0 chr3 226329594 226329738 -1194840 + (TG)n Simple_repeat Simple_repeat 1 144 0 574 226 170 0 chr3 226329738 226329897 -1194681 + MLT1B LTR MaLR 192 377 -13 317 298 23 8 chr3 226329907 226330038 -1194540 + L1MEd LINE L1 1075 1207 -4912 1908 201 15 10 chr3 226330276 226330683 -1193895 + L1MA4 LINE L1 5717 6125 -175 310 259 7 48 chr3 226330882 226331029 -1193549 + (CGTG)n Simple_repeat Simple_repeat 3 143 0 209 195 0 0 chr3 226332154 226332195 -1192383 + GA-rich Low_complexity Low_complexity 2 42 0 199 51 0 51 chr3 226332280 226332319 -1192259 + (CCCCCA)n Simple_repeat Simple_repeat 5 41 0 830 78 0 0 chr3 226333811 226333914 -1190664 + AluSq/x SINE Alu 14 116 -196 1689 115 0 0 chr3 226333915 226334149 -1190429 + AluSx SINE Alu 60 293 -19 2349 189 46 44 chr3 226335155 226335742 -1188836 - L1MD3 LINE L1 -4 7991 7404 365 198 12 47 chr3 226335742 226335828 -1188750 - MLT1F1 LTR MaLR -442 125 43 443 305 140 47 chr3 226335828 226335988 -1188590 - L1MD3 LINE L1 -877 7118 6928 2162 98 0 3 chr3 226335988 226336283 -1188295 - AluSc SINE Alu -15 294 1 443 305 140 47 chr3 226336283 226336358 -1188220 - L1MD3 LINE L1 -1067 6928 6861 194 213 40 80 chr3 226336406 226336481 -1188097 + L2 LINE L2 3201 3272 0 1840 155 10 0 chr3 226337105 226337409 -1187169 - AluSx SINE Alu -5 307 1 271 259 0 0 chr3 226337893 226337951 -1186627 - MIR SINE MIR -86 122 65 2285 86 0 0 chr3 226338795 226339087 -1185491 - AluSg SINE Alu -18 292 1 201 180 0 0 chr3 226340977 226341027 -1183551 + A-rich Low_complexity Low_complexity 1 50 0 197 349 40 16 chr3 226342216 226342342 -1182236 - MIR SINE MIR -50 212 84 1974 96 35 3 chr3 226342428 226342710 -1181868 - AluSq SINE Alu -22 291 1 317 94 51 68 chr3 226347075 226347192 -1177386 + G-rich Low_complexity Low_complexity 5 119 0 206 262 62 88 chr3 226349717 226349830 -1174748 + MIR SINE MIR 45 153 -62 255 281 0 0 chr3 226350753 226350842 -1173736 + L1MC4 LINE L1 6614 6702 -1340 251 247 43 0 chr3 226350775 226350868 -1173710 - L1MC4 LINE L1 -1339 6703 6607 * 184 274 20 0 chr3 226352049 226352100 -1172478 + L2 LINE L2 3219 3270 -2 801 214 16 16 chr3 226353487 226353674 -1170904 + LTR41 LTR ERVL 1 187 -586 295 120 37 185 chr3 226354015 226354123 -1170455 + LTR41 LTR ERVL 559 650 -123 2247 105 0 0 chr3 226354131 226354416 -1170162 - AluSq SINE Alu -20 293 9 560 89 13 0 chr3 226354416 226354495 -1170083 - AluS SINE Alu -225 87 8 436 147 27 80 chr3 226354509 226354659 -1169919 + LTR41 LTR ERVL 648 795 0 858 216 59 39 chr3 226354867 226355122 -1169456 + L1MB8 LINE L1 5876 6135 -43 1823 160 3 23 chr3 226355122 226355429 -1169149 - AluJb SINE Alu -11 301 1 2040 159 48 32 chr3 226355784 226356217 -1168361 - L1MA4A LINE L1 -12 6291 5852 2286 98 7 0 chr3 226356255 226356551 -1168027 + AluSq SINE Alu 1 298 -15 678 228 114 0 chr3 226357462 226357629 -1166949 + MER20 DNA MER1_type 1 186 -33 1495 249 75 86 chr3 226357976 226358724 -1165854 + MER21B LTR ERV1 13 752 -111 21 36 0 0 chr3 226360142 226360170 -1164408 + AT_rich Low_complexity Low_complexity 1 28 0 889 102 0 0 chr3 226360170 226360288 -1164290 - AluSq/x SINE Alu -194 118 1 307 118 265 15 chr3 226361161 226361229 -1163349 + AluJ/FLAM SINE Alu 2 86 -216 299 119 269 15 chr3 226361229 226361296 -1163282 + AluJ/FLAM SINE Alu 3 86 -216 299 119 269 15 chr3 226361296 226361363 -1163215 + AluJ/FLAM SINE Alu 3 86 -216 311 194 0 16 chr3 226361363 226361425 -1163153 + AluJ/FLAM SINE Alu 3 63 -239 1697 122 66 26 chr3 226361441 226361712 -1162866 + AluJo SINE Alu 14 295 -17 2193 87 7 0 chr3 226362222 226362498 -1162080 + AluSq SINE Alu 34 311 -2 401 260 286 26 chr3 226364134 226364519 -1160059 - L3 LINE CR1 -20 1557 1073 180 97 0 0 chr3 226364665 226364696 -1159882 + (A)n Simple_repeat Simple_repeat 1 31 0 909 151 7 0 chr3 226364809 226364948 -1159630 + FLAM_C SINE Alu 1 140 -3 21 36 0 0 chr3 226364949 226364977 -1159601 + AT_rich Low_complexity Low_complexity 1 28 0 22 0 0 0 chr3 226365926 226365948 -1158630 + AT_rich Low_complexity Low_complexity 1 22 0 310 311 131 0 chr3 226367438 226367560 -1157018 + MIR SINE MIR 125 262 0 696 289 54 29 chr3 226368206 226368448 -1156130 + MIR SINE MIR 2 249 -13 2287 93 0 20 chr3 226368478 226368779 -1155799 + AluSx SINE Alu 1 295 -17 2447 90 0 0 chr3 226369214 226369525 -1155053 + AluY SINE Alu 1 311 0 252 329 177 32 chr3 226369902 226370060 -1154518 + MIR SINE MIR 4 184 -78 2304 98 7 0 chr3 226370252 226370549 -1154029 + AluSp SINE Alu 2 300 -13 1345 176 150 0 chr3 226371420 226371687 -1152891 + AluJo SINE Alu 1 307 -5 1822 151 24 10 chr3 226371826 226372124 -1152454 - AluSx SINE Alu -10 302 1 21 57 0 0 chr3 226372434 226372469 -1152109 + AT_rich Low_complexity Low_complexity 1 35 0 2019 152 3 7 chr3 226372499 226372809 -1151769 + AluJb SINE Alu 1 309 -3 2311 49 42 7 chr3 226373160 226373445 -1151133 + AluY SINE Alu 1 295 -16 21 36 0 0 chr3 226373620 226373648 -1150930 + AT_rich Low_complexity Low_complexity 1 28 0 2119 125 7 10 chr3 226376778 226377083 -1147495 - AluSx SINE Alu -8 304 1 21 36 0 0 chr3 226377214 226377242 -1147336 + AT_rich Low_complexity Low_complexity 1 28 0 2544 44 0 7 chr3 226377417 226377714 -1146864 - AluY SINE Alu -16 295 1 2016 139 10 3 chr3 226377719 226378020 -1146558 - AluSx SINE Alu -9 303 1 580 303 70 25 chr3 226378299 226378540 -1146038 + MLT1K LTR MaLR 16 267 -321 346 154 15 15 chr3 226378648 226378713 -1145865 - AluS SINE Alu -235 66 2 963 208 76 66 chr3 226378887 226379041 -1145537 + L1M1 LINE L1 3191 3342 -4223 2042 138 6 25 chr3 226379041 226379359 -1145219 + AluSx SINE Alu 1 312 0 963 208 76 66 chr3 226379359 226379740 -1144838 + L1M1 LINE L1 3342 3739 -3826 6491 60 13 31 chr3 226379900 226380771 -1143807 - SVA Other Other 0 1386 532 776 150 0 38 chr3 226381053 226381186 -1143392 + FLAM_C SINE Alu 16 143 0 2355 104 3 0 chr3 226381239 226381548 -1143030 + AluSp SINE Alu 1 310 -3 277 141 0 127 chr3 226382168 226382239 -1142339 + AluJ/FRAM SINE Alu 232 293 -9 2330 91 0 0 chr3 226382364 226382661 -1141917 - AluY SINE Alu -14 297 1 335 333 132 13 chr3 226383030 226383189 -1141389 - MER5B DNA MER1_type 0 178 1 738 149 8 8 chr3 226383460 226383581 -1140997 - FLAM_C SINE Alu -9 134 14 1473 197 52 48 chr3 226383582 226383658 -1140920 - Charlie1b DNA MER1_type -2271 490 416 2320 94 0 3 chr3 226383658 226383957 -1140621 - AluSx SINE Alu -14 298 1 1473 197 52 48 chr3 226383957 226384064 -1140514 - Charlie1b DNA MER1_type -2345 416 311 949 90 7 35 chr3 226384064 226384195 -1140383 - L1PA12 LINE L1 -3 6165 6032 2430 68 0 3 chr3 226384195 226384488 -1140090 - AluY SINE Alu -19 292 1 2342 86 3 0 chr3 226384488 226384779 -1139799 - AluSg SINE Alu -18 292 1 949 90 7 35 chr3 226384779 226384790 -1139788 - L1PA12 LINE L1 -134 6034 6026 1473 197 52 48 chr3 226384790 226384895 -1139683 - Charlie1b DNA MER1_type -2450 311 208 1639 215 34 20 chr3 226384895 226385253 -1139325 + MLT1A1 LTR MaLR 1 363 -2 1473 197 52 48 chr3 226385253 226385445 -1139133 - Charlie1b DNA MER1_type -2553 208 6 568 131 24 0 chr3 226387027 226387111 -1137467 + AluSp/q SINE Alu 221 306 -7 390 265 158 16 chr3 226387120 226387306 -1137272 + L1MC4a LINE L1 5209 5421 -779 2293 98 0 23 chr3 226387308 226387613 -1136965 - AluSg SINE Alu -12 298 1 1109 211 121 24 chr3 226387639 226387971 -1136607 + L1MC4a LINE L1 5561 5924 -1884 771 122 24 8 chr3 226388042 226388165 -1136413 + FLAM_C SINE Alu 1 125 -8 21 0 0 0 chr3 226388165 226388186 -1136392 + AT_rich Low_complexity Low_complexity 1 21 0 489 202 119 41 chr3 226388316 226388534 -1136044 + L1ME4a LINE L1 5886 6120 -1 204 240 0 0 chr3 226389219 226389269 -1135309 + A-rich Low_complexity Low_complexity 1 50 0 2371 101 3 0 chr3 226389349 226389646 -1134932 - AluSq SINE Alu -15 298 1 266 386 116 21 chr3 226389962 226390247 -1134331 - L2 LINE L2 -855 2459 2148 2466 74 3 10 chr3 226390280 226390591 -1133987 + AluY SINE Alu 1 309 -2 345 347 41 0 chr3 226390593 226390691 -1133887 - MIR SINE MIR -154 108 7 1535 181 39 39 chr3 226390807 226391117 -1133461 - AluJo SINE Alu -2 310 1 2384 103 3 0 chr3 226391495 226391805 -1132773 + AluSp SINE Alu 1 311 -2 23 33 0 0 chr3 226391815 226391845 -1132733 + AT_rich Low_complexity Low_complexity 1 30 0 656 211 28 0 chr3 226392060 226392202 -1132376 - MIR SINE MIR -83 179 34 2077 133 10 0 chr3 226392612 226392912 -1131666 - AluSx SINE Alu -9 303 1 1459 197 21 45 chr3 226393071 226393326 -1131252 + MLT1D LTR MaLR 1 261 -244 2080 158 0 0 chr3 226393326 226393630 -1130948 + AluJb SINE Alu 1 304 -8 2396 53 0 33 chr3 226393640 226393942 -1130636 + AluY SINE Alu 1 292 -19 1459 197 21 45 chr3 226393942 226394220 -1130358 + MLT1D LTR MaLR 270 497 -8 1627 168 57 7 chr3 226394946 226395226 -1129352 - AluJb SINE Alu -18 294 1 2305 104 7 3 chr3 226395682 226395989 -1128589 + AluSq SINE Alu 1 308 -5 3265 179 33 50 chr3 226396301 226396902 -1127676 - L1MA6 LINE L1 -6 6294 5760 2143 116 3 0 chr3 226396902 226397195 -1127383 - AluSx SINE Alu -18 294 1 3265 179 33 50 chr3 226397195 226397482 -1127096 - L1MA6 LINE L1 -540 5760 5470 * 5678 194 34 20 chr3 226397472 226398444 -1126134 - L1MA6 LINE L1 -2365 3781 2785 2225 110 16 13 chr3 226398444 226398754 -1125824 + AluSx SINE Alu 1 311 -1 5678 194 34 20 chr3 226398754 226399078 -1125500 - L1MA6 LINE L1 -3361 2785 2467 2108 70 4 0 chr3 226399209 226399465 -1125113 - AluY SINE Alu -52 259 3 198 307 193 17 chr3 226399788 226399964 -1124614 - MIR SINE MIR -25 237 31 1793 182 0 28 chr3 226400045 226400363 -1124215 + AluJo SINE Alu 1 309 -3 2325 100 0 3 chr3 226400828 226401129 -1123449 + AluSx SINE Alu 1 300 -12 833 135 8 8 chr3 226401142 226401275 -1123303 + FLAM_C SINE Alu 1 133 0 798 237 13 45 chr3 226401275 226401499 -1123079 + MIR SINE MIR 20 236 -26 1541 189 3 25 chr3 226401963 226402281 -1122297 + AluJo SINE Alu 1 311 -1 1866 126 17 14 chr3 226402451 226402744 -1121834 - AluJo SINE Alu -18 294 1 1193 119 5 16 chr3 226404741 226404926 -1119652 - AluJo SINE Alu -10 302 120 451 322 21 0 chr3 226404926 226405069 -1119509 - Charlie8 DNA MER1_type -2265 152 7 1534 178 20 46 chr3 226405445 226405749 -1118829 - AluJo SINE Alu -16 296 1 2042 84 94 4 chr3 226405822 226406097 -1118481 - AluSp SINE Alu -13 300 1 2184 74 0 7 chr3 226406099 226406369 -1118209 - AluSg SINE Alu -20 290 23 2432 90 0 0 chr3 226406492 226406791 -1117787 - AluSx SINE Alu -13 299 1 253 254 16 0 chr3 226406803 226406866 -1117712 + MIR SINE MIR 90 153 -109 378 224 0 0 chr3 226407527 226407594 -1116984 + FLAM_A SINE Alu 1 67 -66 400 194 0 0 chr3 226407599 226407666 -1116912 + FLAM_A SINE Alu 1 67 -75 672 200 24 0 chr3 226407671 226407796 -1116782 + FLAM_A SINE Alu 1 128 -5 365 271 28 83 chr3 226408159 226408303 -1116275 - L2 LINE L2 -1 3271 3136 1140 104 0 88 chr3 226408534 226408727 -1115851 + AluY SINE Alu 136 311 0 821 165 8 8 chr3 226409299 226409432 -1115146 + FLAM_C SINE Alu 1 133 0 893 133 7 15 chr3 226409929 226410064 -1114514 - AluJo SINE Alu -178 134 1 1704 77 0 18 chr3 226410930 226411150 -1113428 - AluSp SINE Alu -97 216 1 717 184 19 6 chr3 226411152 226411310 -1113268 + L1 LINE L1 2779 2938 -3208 1697 119 104 0 chr3 226411462 226411713 -1112865 - AluSq SINE Alu -36 277 1 566 214 107 6 chr3 226411728 226411896 -1112682 + L1MC4 LINE L1 7852 8036 -6 2104 106 35 0 chr3 226412341 226412625 -1111953 + AluSx SINE Alu 1 294 -18 240 205 0 145 chr3 226413284 226413367 -1111211 + L2 LINE L2 3158 3228 -44 230 174 0 0 chr3 226413404 226413450 -1111128 + L2 LINE L2 3183 3228 -44 378 203 32 98 chr3 226413450 226413573 -1111005 + L2 LINE L2 3158 3272 0 2505 70 0 0 chr3 226413827 226414127 -1110451 + AluSg SINE Alu 1 300 -10 1890 217 42 49 chr3 226414288 226414814 -1109764 + L1ME1 LINE L1 3663 4184 -1962 605 263 52 49 chr3 226414809 226415117 -1109461 + L1ME1 LINE L1 5857 6165 -1 * 2429 84 0 7 chr3 226415127 226415435 -1109143 + AluSc SINE Alu 1 306 -3 2218 109 3 0 chr3 226415457 226415750 -1108828 + AluSp SINE Alu 1 294 -19 2123 120 20 0 chr3 226415878 226416178 -1108400 + AluSx SINE Alu 1 306 -6 408 95 16 0 chr3 226416193 226416256 -1108322 + MER53 DNA DNA 2 65 -124 2280 146 153 0 chr3 226416257 226416662 -1107916 - LTR24 LTR ERV1 0 467 1 519 134 37 0 chr3 226416750 226416832 -1107746 + MER53 DNA DNA 105 189 0 269 243 103 84 chr3 226417013 226417120 -1107458 + L2 LINE L2 3160 3268 -4 935 106 8 0 chr3 226417512 226417644 -1106934 - FLAM_C SINE Alu 0 133 1 2203 66 16 62 chr3 226418053 226418357 -1106221 - AluSx SINE Alu -10 302 13 1644 106 55 22 chr3 226421483 226421756 -1102822 + AluSx SINE Alu 1 282 -30 447 216 21 0 chr3 226421820 226421917 -1102661 - MIR SINE MIR -2 260 162 183 340 0 0 chr3 226421921 226421974 -1102604 + MIR SINE MIR 12 64 -198 189 0 0 0 chr3 226421990 226422011 -1102567 + (TTAA)n Simple_repeat Simple_repeat 2 22 0 1905 94 47 14 chr3 226422011 226422287 -1102291 - AluSx SINE Alu -27 285 1 194 250 36 0 chr3 226422287 226422343 -1102235 - MIR SINE MIR -51 211 154 688 265 65 23 chr3 226422345 226422560 -1102018 + MIR SINE MIR 12 235 -27 195 205 8 51 chr3 226422582 226422699 -1101879 + (TATG)n Simple_repeat Simple_repeat 1 112 0 389 261 5 53 chr3 226422711 226422899 -1101679 + (TA)n Simple_repeat Simple_repeat 2 180 0 455 202 123 18 chr3 226422911 226423025 -1101553 - MIR SINE MIR -108 154 29 235 247 86 0 chr3 226423431 226423512 -1101066 + MIR SINE MIR 116 203 -59 21 0 0 0 chr3 226423649 226423670 -1100908 + AT_rich Low_complexity Low_complexity 1 21 0 2205 82 55 3 chr3 226423870 226424162 -1100416 - AluY SINE Alu -4 307 1 1731 177 7 7 chr3 226424774 226425073 -1099505 - AluJo SINE Alu 0 312 14 204 302 65 65 chr3 226425357 226425496 -1099082 + L2 LINE L2 3126 3264 -8 1823 164 27 3 chr3 226425563 226425732 -1098846 - AluSx SINE Alu -7 305 125 432 0 0 0 chr3 226425732 226425780 -1098798 + (TTTA)n Simple_repeat Simple_repeat 2 49 0 1823 164 27 3 chr3 226425780 226425908 -1098670 - AluSx SINE Alu -187 125 1 281 336 64 7 chr3 226426930 226427070 -1097508 - L3 LINE CR1 -10 1567 1420 1365 201 95 0 chr3 226427626 226427890 -1096688 + AluJb SINE Alu 1 289 -23 2318 69 3 43 chr3 226428032 226428336 -1096242 - AluSp SINE Alu -21 292 1 23 54 0 0 chr3 226428424 226428461 -1096117 + AT_rich Low_complexity Low_complexity 1 37 0 964 112 6 96 chr3 226430780 226430958 -1093620 - AluY SINE Alu -14 297 136 356 200 0 0 chr3 226431267 226431332 -1093246 + L2 LINE L2 3207 3271 -1 672 200 24 0 chr3 226431695 226431820 -1092758 - FLAM_A SINE Alu -5 128 1 400 194 0 0 chr3 226431825 226431892 -1092686 - FRAM/FAM SINE Alu -109 67 1 378 224 0 0 chr3 226431897 226431964 -1092614 - FRAM/FAM SINE Alu -99 67 1 253 254 16 0 chr3 226432625 226432688 -1091890 - MIR SINE MIR -109 153 90 2432 90 0 0 chr3 226432700 226432999 -1091579 + AluSx SINE Alu 1 299 -13 2184 74 0 7 chr3 226433122 226433392 -1091186 + AluSg SINE Alu 23 290 -20 2651 61 0 0 chr3 226433394 226433705 -1090873 + AluY SINE Alu 1 311 0 821 165 8 8 chr3 226434277 226434410 -1090168 + FLAM_C SINE Alu 1 133 0 893 133 7 15 chr3 226434907 226435042 -1089536 - AluJo SINE Alu -178 134 1 1600 110 0 14 chr3 226435908 226436127 -1088451 - AluSp SINE Alu -97 216 1 26 0 0 0 chr3 226436931 226436957 -1087621 + GC_rich Low_complexity Low_complexity 1 26 0 25 0 0 0 chr3 226436992 226437017 -1087561 + GC_rich Low_complexity Low_complexity 1 25 0 1346 183 73 38 chr3 226437211 226437684 -1086894 - L1 LINE L1 -3716 3849 3344 1944 148 6 25 chr3 226437698 226438016 -1086562 - AluSx SINE Alu 0 312 1 1138 261 138 34 chr3 226438295 226438731 -1085847 + MLT1K LTR MaLR 16 496 -92 1283 185 11 15 chr3 226438741 226439006 -1085572 - LTR14A LTR ERVK -78 266 3 243 0 0 0 chr3 226439044 226439071 -1085507 + (T)n Simple_repeat Simple_repeat 1 27 0 2514 28 7 0 chr3 226439154 226439437 -1085141 - SVA Other Other -3 1383 1099 227 200 40 100 chr3 226441780 226441880 -1082698 - L1M4 LINE L1 -1814 4332 4239 889 196 12 24 chr3 226441881 226442049 -1082529 - AluJb SINE Alu -9 303 138 655 161 15 92 chr3 226442541 226442671 -1081907 - AluJo SINE Alu -143 169 50 788 201 78 106 chr3 226442687 226442898 -1081680 - L1M4 LINE L1 -1902 4244 4041 2340 91 0 7 chr3 226442898 226443194 -1081384 - AluSg SINE Alu -16 294 1 788 201 78 106 chr3 226443194 226443266 -1081312 - L1M4 LINE L1 -2105 4041 3969 1786 149 3 19 chr3 226444396 226444704 -1079874 - AluJb SINE Alu -9 303 1 769 172 8 30 chr3 226444929 226445063 -1079515 + FLAM_A SINE Alu 1 131 -2 755 153 144 0 chr3 226445232 226445350 -1079228 + AluSq/x SINE Alu 2 136 -176 2793 7 0 3 chr3 226445350 226445653 -1078925 + AluYa5 SINE Alu 1 302 -9 2142 112 17 0 chr3 226445679 226445975 -1078603 + AluSx SINE Alu 10 310 -2 571 120 65 0 chr3 226446304 226446396 -1078182 + L1PA8 LINE L1 6073 6170 -2 1917 141 18 0 chr3 226446481 226446764 -1077814 - AluSx SINE Alu -24 288 1 775 224 0 20 chr3 226448189 226448336 -1076242 + FAM SINE Alu 1 144 -41 25 0 0 0 chr3 226448882 226448907 -1075671 + AT_rich Low_complexity Low_complexity 1 25 0 269 297 12 5 chr3 226449230 226449334 -1075244 + MER2 DNA MER2_type 1 103 -136 332 220 7 23 chr3 226449334 226449420 -1075158 + MER2 DNA MER2_type 4 89 -150 2015 98 6 63 chr3 226450061 226450376 -1074202 - AluSg1 SINE Alu -12 297 1 458 226 47 58 chr3 226450398 226450588 -1073990 + HAL1 LINE L1 2317 2504 -3 189 275 75 25 chr3 226450599 226450679 -1073899 + MER5B DNA MER1_type 53 136 -42 1390 176 92 26 chr3 226451122 226451394 -1073184 - AluJb SINE Alu -22 290 1 1683 167 14 10 chr3 226451579 226451867 -1072711 - AluJo SINE Alu -23 289 1 2340 194 42 21 chr3 226452422 226452942 -1071636 - L1MB8 LINE L1 -185 5993 5463 230 132 26 0 chr3 226452939 226452977 -1071601 + L1M4 LINE L1 4281 4319 -1827 * 2191 102 7 0 chr3 226452990 226453283 -1071295 + AluSx SINE Alu 3 297 -15 2114 99 3 10 chr3 226453294 226453606 -1070972 + AluY SINE Alu 1 310 -1 4750 157 118 61 chr3 226453838 226454149 -1070429 - L1MDa LINE L1 -4127 2413 2121 2055 180 40 11 chr3 226454149 226454527 -1070051 + MLT1B LTR MaLR 1 389 -1 4750 157 118 61 chr3 226454527 226454754 -1069824 - L1MDa LINE L1 -4419 2121 1908 1781 149 46 4 chr3 226454754 226455035 -1069543 + AluJb SINE Alu 1 293 -19 4750 157 118 61 chr3 226455035 226455140 -1069438 - L1MDa LINE L1 -4632 1908 1810 1926 160 0 0 chr3 226455140 226455434 -1069144 + AluJb SINE Alu 1 294 -18 4750 157 118 61 chr3 226455434 226456106 -1068472 - L1MDa LINE L1 -4730 1810 1021 1183 175 186 75 chr3 226456092 226456285 -1068293 - L1MDa LINE L1 -6066 474 304 * 1896 131 41 0 chr3 226456285 226456576 -1068002 - AluSq SINE Alu -10 303 1 1183 175 186 75 chr3 226456576 226456742 -1067836 - L1MDa LINE L1 -6236 304 75 305 188 0 0 chr3 226456862 226456910 -1067668 - L1MDa LINE L1 -6475 65 18 27 29 0 0 chr3 226457341 226457375 -1067203 + AT_rich Low_complexity Low_complexity 1 34 0 2195 167 59 21 chr3 226458153 226458627 -1065951 - L1MB4 LINE L1 -29 6151 5660 1689 129 0 140 chr3 226458628 226458985 -1065593 - AluJo SINE Alu -5 307 1 535 200 120 0 chr3 226459161 226459311 -1065267 + L1ME4a LINE L1 5943 6110 -11 262 77 26 0 chr3 226459332 226459371 -1065207 - MER57A LTR ERV1 -69 334 295 2407 75 7 0 chr3 226459374 226459680 -1064898 - AluY SINE Alu -3 308 1 300 102 0 0 chr3 226459710 226459759 -1064819 + (TTTA)n Simple_repeat Simple_repeat 2 50 0 1359 151 57 0 chr3 226459783 226459995 -1064583 - AluJo SINE Alu -88 224 1 238 301 11 54 chr3 226460085 226460178 -1064400 - L2 LINE L2 -1411 1903 1815 427 188 350 12 chr3 226460230 226460390 -1064188 - MER33 DNA MER1_type -105 219 6 22 70 0 0 chr3 226460540 226460583 -1063995 + AT_rich Low_complexity Low_complexity 1 43 0 24 32 0 0 chr3 226460945 226460976 -1063602 + AT_rich Low_complexity Low_complexity 1 31 0 1847 120 102 0 chr3 226461032 226461307 -1063271 - AluSx SINE Alu -9 303 1 2307 110 0 0 chr3 226461319 226461628 -1062950 - AluSg SINE Alu -1 309 1 1786 149 3 19 chr3 226462783 226463091 -1061487 - AluJb SINE Alu -9 303 1 768 172 8 30 chr3 226463316 226463450 -1061128 + FLAM_A SINE Alu 1 131 -2 2072 125 17 0 chr3 226463757 226464053 -1060525 + AluSx SINE Alu 1 301 -11 21 0 0 0 chr3 226464769 226464790 -1059788 + AT_rich Low_complexity Low_complexity 1 21 0 1965 152 10 0 chr3 226467238 226467535 -1057043 + AluSg SINE Alu 1 300 -10 273 326 156 7 chr3 226467555 226467696 -1056882 - MIR3 SINE MIR -15 193 32 649 230 128 7 chr3 226467951 226468099 -1056479 + MER8 DNA MER2_type 1 166 -73 351 194 0 0 chr3 226468099 226468161 -1056417 - Tigger2 DNA MER2_type -2656 62 1 189 0 0 0 chr3 226468556 226468577 -1056001 + (TTA)n Simple_repeat Simple_repeat 2 22 0 2519 80 3 0 chr3 226468827 226469139 -1055439 - AluSp SINE Alu 0 313 1 1910 131 10 39 chr3 226469518 226469823 -1054755 - AluSx SINE Alu -16 296 1 2057 119 37 0 chr3 226469833 226470128 -1054450 - AluSx SINE Alu -6 306 1 1399 122 5 0 chr3 226470779 226470976 -1053602 - AluSg/x SINE Alu -7 303 106 2346 90 3 0 chr3 226471017 226471318 -1053260 - AluSp SINE Alu -11 302 1 1298 146 38 92 chr3 226471402 226471717 -1052861 - AluJo SINE Alu 0 312 15 2474 58 0 0 chr3 226473367 226473660 -1050918 + AluSx SINE Alu 2 294 -18 315 274 108 114 chr3 226473945 226474419 -1050159 - L1M2 LINE L1 -5604 1245 775 1601 121 0 35 chr3 226475184 226475302 -1049276 - AluJb SINE Alu -64 248 127 464 59 47 0 chr3 226475302 226475387 -1049191 + (TA)n Simple_repeat Simple_repeat 1 89 0 2179 100 0 0 chr3 226475387 226475676 -1048902 - AluSq SINE Alu -24 289 1 1601 121 0 35 chr3 226475676 226475812 -1048766 - AluJb SINE Alu -183 129 2 314 319 112 11 chr3 226476661 226476849 -1047729 - MIR SINE MIR -9 253 47 229 268 94 47 chr3 226476995 226477122 -1047456 - MIR SINE MIR -97 165 33 2112 133 3 0 chr3 226477448 226477749 -1046829 + AluSx SINE Alu 1 302 -10 781 238 117 52 chr3 226477946 226478413 -1046165 + MLT1K LTR MaLR 4 555 -33 2386 96 0 0 chr3 226478413 226478716 -1045862 - AluSg SINE Alu -7 303 1 781 238 117 52 chr3 226478716 226478753 -1045825 + MLT1K LTR MaLR 555 588 0 304 244 183 17 chr3 226478880 226478995 -1045583 - L2 LINE L2 -3 3269 3136 734 281 35 31 chr3 226479288 226479548 -1045030 - MIR SINE MIR 0 262 2 832 72 0 0 chr3 226479672 226479769 -1044809 + AluSg SINE Alu 35 131 -179 2199 113 3 3 chr3 226479774 226480075 -1044503 + AluSx SINE Alu 2 302 -10 2143 113 6 3 chr3 226480306 226480617 -1043961 + AluSx SINE Alu 1 312 0 1704 155 3 28 chr3 226480699 226481013 -1043565 + AluJb SINE Alu 1 307 0 653 192 93 126 chr3 226481518 226481732 -1042846 - MER3 DNA MER1_type 0 209 3 2174 109 3 22 chr3 226482312 226482625 -1041953 + AluSx SINE Alu 1 307 -5 1987 96 6 74 chr3 226482627 226482939 -1041639 + AluSg SINE Alu 1 291 -19 1774 257 84 72 chr3 226482967 226483541 -1041037 + L1ME3A LINE L1 5184 5780 -390 2321 103 0 3 chr3 226483541 226483841 -1040737 + AluSg SINE Alu 1 299 -11 1774 257 84 72 chr3 226483841 226484220 -1040358 + L1ME3A LINE L1 5780 6153 -17 2004 213 120 34 chr3 226484436 226484962 -1039616 - MLT1E2 LTR MaLR 0 626 56 862 148 27 27 chr3 226485004 226485153 -1039425 - MSTD LTR MaLR 0 396 248 1836 148 95 0 chr3 226485153 226485510 -1039068 - L1 LINE L1 -2400 3746 3356 518 286 50 33 chr3 226486043 226486225 -1038353 - MER5A DNA MER1_type -3 186 2 1148 136 12 0 chr3 226486243 226486405 -1038173 + AluSg/x SINE Alu 134 297 -15 208 364 23 0 chr3 226486440 226486528 -1038050 + MER5A DNA MER1_type 2 91 -98 1994 127 23 17 chr3 226486703 226487002 -1037576 + AluSx SINE Alu 1 301 -11 2379 92 7 0 chr3 226487612 226487918 -1036660 - AluSx SINE Alu -4 308 1 312 343 105 44 chr3 226488404 226488526 -1036052 + HAL1 LINE L1 683 821 -1686 2387 93 3 0 chr3 226488526 226488836 -1035742 - AluSp SINE Alu -2 311 1 312 343 105 44 chr3 226488836 226488894 -1035684 + HAL1 LINE L1 821 874 -1633 760 140 0 9 chr3 226488903 226489017 -1035561 - FLAM_C SINE Alu -10 133 21 5046 159 106 55 chr3 226489138 226489201 -1035377 - L1MDa LINE L1 -3866 2674 2616 2351 66 0 17 chr3 226489201 226489503 -1035075 - AluY SINE Alu -14 297 1 5046 159 106 55 chr3 226489503 226490007 -1034571 - L1MDa LINE L1 -3924 2616 2139 1870 180 40 11 chr3 226490007 226490385 -1034193 + MLT1B LTR MaLR 1 389 -1 5046 159 106 55 chr3 226490385 226490612 -1033966 - L1MDa LINE L1 -4401 2139 1925 1802 149 46 3 chr3 226490612 226490894 -1033684 + AluJb SINE Alu 1 294 -18 5046 159 106 55 chr3 226490894 226490999 -1033579 - L1MDa LINE L1 -4615 1925 1827 1968 157 0 0 chr3 226490999 226491293 -1033285 + AluJb SINE Alu 1 294 -18 5046 159 106 55 chr3 226491293 226491946 -1032632 - L1MDa LINE L1 -4713 1827 1036 1067 175 186 75 chr3 226491951 226492144 -1032434 - L1MDa LINE L1 -6066 474 304 1974 127 38 0 chr3 226492144 226492436 -1032142 - AluSq SINE Alu -10 303 1 1067 175 186 75 chr3 226492436 226492602 -1031976 - L1MDa LINE L1 -6236 304 75 284 188 0 0 chr3 226492722 226492770 -1031808 - L1MDa LINE L1 -6475 65 18 27 29 0 0 chr3 226493201 226493235 -1031343 + AT_rich Low_complexity Low_complexity 1 34 0 2783 187 55 35 chr3 226494013 226494491 -1030087 - L1MB3 LINE L1 -31 6152 5654 1829 122 0 138 chr3 226494491 226494853 -1029725 - AluJo SINE Alu 0 312 1 2783 187 55 35 chr3 226494853 226495079 -1029499 - L1MB3 LINE L1 -529 5654 5434 1225 143 19 0 chr3 226495080 226495289 -1029289 - L1MA3 LINE L1 0 6305 6093 1146 188 79 118 chr3 226495370 226495503 -1029075 - L1MC5 LINE L1 -571 7390 7253 2304 93 7 0 chr3 226495503 226495813 -1028765 - AluSx SINE Alu 0 312 1 1146 188 79 118 chr3 226495813 226496066 -1028512 - L1MC5 LINE L1 -708 7253 7030 2291 116 8 8 chr3 226496066 226496421 -1028157 - THE1A LTR MaLR 0 355 1 1146 188 79 118 chr3 226496421 226496603 -1027975 - L1MC5 LINE L1 -931 7030 6843 1382 162 175 10 chr3 226497225 226497533 -1027045 - MER47A DNA MER2_type 0 366 8 322 230 79 40 chr3 226498017 226498143 -1026435 - L1ME LINE L1 -381 5740 5610 2252 106 3 0 chr3 226498260 226498562 -1026016 - AluSp SINE Alu -10 303 1 227 372 0 68 chr3 226498895 226499043 -1025535 - MIR SINE MIR -85 177 40 246 32 0 0 chr3 226499313 226499344 -1025234 + (TG)n Simple_repeat Simple_repeat 2 32 0 2300 78 0 3 chr3 226499795 226500103 -1024475 - AluY SINE Alu 0 307 1 464 302 83 1 chr3 226500196 226500343 -1024235 - MIR SINE MIR -64 144 37 2405 97 0 0 chr3 226500826 226501135 -1023443 + AluSx SINE Alu 1 309 -3 2366 106 0 0 chr3 226501416 226501718 -1022860 + AluSq SINE Alu 1 302 -11 731 162 0 0 chr3 226501874 226501991 -1022587 - AluJb SINE Alu -194 118 2 1590 182 11 0 chr3 226502511 226502797 -1021781 + AluJo SINE Alu 1 289 -23 282 115 0 0 chr3 226502820 226502872 -1021706 + (TG)n Simple_repeat Simple_repeat 2 53 0 297 291 103 30 chr3 226503092 226503257 -1021321 + L3 LINE CR1 1360 1536 -41 260 229 9 86 chr3 226503442 226503547 -1021031 - L1MC5 LINE L1 -102 7859 7763 1793 173 3 3 chr3 226503661 226503956 -1020622 - AluJb SINE Alu -17 295 1 22 0 0 0 chr3 226504764 226504786 -1019792 + AT_rich Low_complexity Low_complexity 1 22 0 2334 93 0 7 chr3 226504790 226504958 -1019620 - AluY SINE Alu -12 299 132 1871 93 110 41 chr3 226504958 226505248 -1019330 - AluSg SINE Alu 0 310 1 2334 93 0 7 chr3 226505248 226505380 -1019198 - AluY SINE Alu -179 132 1 1717 147 28 11 chr3 226505477 226505763 -1018815 - AluJo SINE Alu -19 293 3 2139 276 113 49 chr3 226505771 226506045 -1018533 - HAL1 LINE L1 -165 2342 2087 2512 67 0 0 chr3 226506045 226506344 -1018234 - AluSg SINE Alu -11 299 1 2139 276 113 49 chr3 226506344 226506557 -1018021 - HAL1 LINE L1 -420 2087 1889 2256 81 7 20 chr3 226506557 226506853 -1017725 - AluSg1 SINE Alu -17 292 1 2139 276 113 49 chr3 226506853 226507450 -1017128 - HAL1 LINE L1 -618 1889 1332 2556 64 0 3 chr3 226507450 226507762 -1016816 - AluY SINE Alu 0 311 1 2139 276 113 49 chr3 226507762 226508632 -1015946 - HAL1 LINE L1 -1175 1332 261 29 90 0 0 chr3 226509656 226509734 -1014844 + AT_rich Low_complexity Low_complexity 1 78 0 2354 88 0 3 chr3 226509775 226510071 -1014507 + AluSc SINE Alu 1 295 -14 2482 73 0 0 chr3 226510320 226510623 -1013955 - AluY SINE Alu -8 303 1 2308 105 0 0 chr3 226510682 226510986 -1013592 - AluSq SINE Alu -9 304 1 23 0 0 0 chr3 226511605 226511628 -1012950 + AT_rich Low_complexity Low_complexity 1 23 0 1918 143 0 42 chr3 226511773 226512081 -1012497 + AluSx SINE Alu 1 295 -17 614 233 0 0 chr3 226512147 226512276 -1012302 + FLAM_A SINE Alu 1 129 -4 395 292 66 15 chr3 226512907 226513044 -1011534 + L3 LINE CR1 1430 1573 -4 1665 181 26 0 chr3 226513706 226514010 -1010568 + AluJb SINE Alu 1 312 0 2062 109 0 59 chr3 226514164 226514484 -1010094 + AluSx SINE Alu 1 301 -11 423 310 37 59 chr3 226514845 226515044 -1009534 - L1MEd LINE L1 -5749 370 181 1845 217 105 42 chr3 226515044 226515633 -1008945 - MLT1E2 LTR MaLR 0 626 1 423 310 37 59 chr3 226515633 226515807 -1008771 - L1MEd LINE L1 -5938 181 5 387 0 0 0 chr3 226515818 226515861 -1008717 + (TTTTG)n Simple_repeat Simple_repeat 5 47 0 1400 196 7 25 chr3 226515861 226516146 -1008432 - AluJb SINE Alu -32 280 1 441 305 34 0 chr3 226516252 226516370 -1008208 - L2 LINE L2 -5 3308 3187 27 49 0 0 chr3 226516769 226516810 -1007768 + AT_rich Low_complexity Low_complexity 1 41 0 2308 113 0 0 chr3 226516811 226517112 -1007466 + AluSx SINE Alu 1 301 -11 29 90 0 0 chr3 226517569 226517647 -1006931 + AT_rich Low_complexity Low_complexity 1 78 0 2325 94 0 3 chr3 226517688 226517985 -1006593 + AluSc SINE Alu 1 296 -13 2455 76 0 0 chr3 226518234 226518537 -1006041 - AluY SINE Alu -8 303 1 2392 89 0 3 chr3 226518596 226518900 -1005678 - AluSq SINE Alu -9 304 2 25 31 0 0 chr3 226519301 226519333 -1005245 + AT_rich Low_complexity Low_complexity 1 32 0 825 148 213 22 chr3 226519742 226519925 -1004653 - MER20 DNA MER1_type -1 218 1 279 362 60 20 chr3 226519933 226520082 -1004496 + MIR3 SINE MIR 46 200 -8 596 146 0 0 chr3 226520150 226520239 -1004339 - FLAM_A SINE Alu -19 123 35 246 178 50 59 chr3 226520447 226520548 -1004030 + L1MC5 LINE L1 7842 7941 -20 22 35 0 0 chr3 226521256 226521285 -1003293 + AT_rich Low_complexity Low_complexity 1 29 0 23 33 0 0 chr3 226521497 226521527 -1003051 + AT_rich Low_complexity Low_complexity 1 30 0 1329 164 126 30 chr3 226521540 226521809 -1002769 - AluJo SINE Alu -17 295 1 956 195 6 0 chr3 226521812 226521976 -1002602 - AluJo/FRAM SINE Alu -17 295 131 409 203 0 0 chr3 226521976 226522050 -1002528 - AluJ/FLAM SINE Alu -234 78 5 913 170 70 80 chr3 226523064 226523130 -1001448 + MER33 DNA MER1_type 6 71 -2514 2076 106 0 67 chr3 226523130 226523442 -1001136 + AluSx SINE Alu 1 291 -21 913 170 70 80 chr3 226523442 226523675 -1000903 + MER33 DNA MER1_type 71 302 -22 821 161 0 0 chr3 226524422 226524559 -1000019 + AluSg/x SINE Alu 168 304 -8 2119 120 0 10 chr3 226524579 226524870 -999708 - AluSx SINE Alu -14 298 11 21 0 0 0 chr3 226524890 226524911 -999667 + AT_rich Low_complexity Low_complexity 1 21 0 228 35 0 0 chr3 226525027 226525056 -999522 + (TG)n Simple_repeat Simple_repeat 1 29 0 2135 96 7 0 chr3 226526089 226526370 -998208 - AluSx SINE Alu -29 283 1 21 0 0 0 chr3 226526991 226527012 -997566 + AT_rich Low_complexity Low_complexity 1 21 0 1924 143 0 39 chr3 226527157 226527464 -997114 + AluSx SINE Alu 1 295 -17 614 233 0 0 chr3 226527530 226527659 -996919 + FLAM_A SINE Alu 1 129 -4 395 292 66 15 chr3 226528290 226528427 -996151 + L3 LINE CR1 1430 1573 -4 1665 181 26 0 chr3 226529089 226529393 -995185 + AluJb SINE Alu 1 312 0 2062 109 0 59 chr3 226529547 226529867 -994711 + AluSx SINE Alu 1 301 -11 423 310 37 59 chr3 226530228 226530427 -994151 - L1MEd LINE L1 -5749 370 181 1845 217 105 42 chr3 226530427 226531016 -993562 - MLT1E2 LTR MaLR 0 626 1 423 310 37 59 chr3 226531016 226531190 -993388 - L1MEd LINE L1 -5938 181 5 387 0 0 0 chr3 226531201 226531244 -993334 + (TTTTG)n Simple_repeat Simple_repeat 5 47 0 1400 196 7 25 chr3 226531244 226531529 -993049 - AluJb SINE Alu -32 280 1 441 305 34 0 chr3 226531635 226531753 -992825 - L2 LINE L2 -5 3308 3187 27 49 0 0 chr3 226532152 226532193 -992385 + AT_rich Low_complexity Low_complexity 1 41 0 2308 113 0 0 chr3 226532194 226532495 -992083 + AluSx SINE Alu 1 301 -11 1997 131 31 3 chr3 226532797 226533087 -991491 + AluSx SINE Alu 1 298 -14 648 257 223 24 chr3 226533278 226533570 -991008 - L2 LINE L2 -91 3222 2873 438 272 17 1 chr3 226533566 226533706 -990872 - L2 LINE L2 -927 2387 2247 * 577 262 42 96 chr3 226533704 226533787 -990791 - L2 LINE L2 -1219 2095 2009 848 182 50 13 chr3 226533787 226533946 -990632 - FRAM SINE Alu -1 165 1 577 262 42 96 chr3 226533946 226534008 -990570 - L2 LINE L2 -1305 2009 1945 2136 98 0 23 chr3 226534008 226534314 -990264 - AluSc SINE Alu -10 299 1 577 262 42 96 chr3 226534314 226534522 -990056 - L2 LINE L2 -1369 1945 1760 1618 157 31 24 chr3 226534539 226534826 -989752 + AluJb SINE Alu 22 310 -2 2215 96 4 0 chr3 226535014 226535314 -989264 + AluSx SINE Alu 1 301 0 1393 196 52 14 chr3 226535512 226535803 -988775 + AluJb SINE Alu 1 302 0 762 134 0 63 chr3 226535804 226535946 -988632 + FLAM_C SINE Alu 1 133 0 279 139 0 0 chr3 226535975 226536018 -988560 + AluJb SINE Alu 194 236 -66 38 22 0 0 chr3 226537093 226537138 -987440 + AT_rich Low_complexity Low_complexity 1 45 0 550 233 0 17 chr3 226537918 226538090 -986488 + CT-rich Low_complexity Low_complexity 3 171 0 1079 90 0 0 chr3 226538214 226538347 -986231 - AluSc SINE Alu -176 133 1 25 31 0 0 chr3 226538604 226538636 -985942 + AT_rich Low_complexity Low_complexity 1 32 0 2353 96 3 3 chr3 226538812 226539114 -985464 + AluSp SINE Alu 1 302 -11 2495 83 0 6 chr3 226539114 226539427 -985151 + AluSp SINE Alu 1 311 -2 219 139 0 0 chr3 226539479 226539515 -985063 + (T)n Simple_repeat Simple_repeat 1 36 0 1516 177 87 4 chr3 226539528 226539794 -984784 + AluJo SINE Alu 1 288 -24 195 42 0 0 chr3 226539794 226539818 -984760 + (GA)n Simple_repeat Simple_repeat 2 25 0 1472 167 62 4 chr3 226539818 226540076 -984502 - AluJo SINE Alu -39 273 1 35 33 0 17 chr3 226540295 226540336 -984242 + AT_rich Low_complexity Low_complexity 1 42 -17 786 162 0 0 chr3 226540336 226540453 -984125 - FLAM_C SINE Alu -15 118 2 35 33 0 17 chr3 226540453 226540471 -984107 + AT_rich Low_complexity Low_complexity 42 59 0 571 235 19 37 chr3 226541593 226541755 -982823 + L2 LINE L2 3155 3313 0 2039 141 0 19 chr3 226541982 226542295 -982283 + AluSx SINE Alu 1 307 -5 196 260 0 20 chr3 226542671 226542721 -981857 - MIR SINE MIR -122 140 92 346 277 59 0 chr3 226543240 226543359 -981219 - MIR SINE MIR 0 262 137 263 288 36 79 chr3 226544002 226544141 -980437 - MIR SINE MIR -122 140 8 238 244 39 13 chr3 226544399 226544477 -980101 + MIR SINE MIR 113 192 -70 2198 119 0 10 chr3 226546419 226546730 -977848 + AluSg SINE Alu 1 308 -2 182 366 20 10 chr3 226547641 226547742 -976836 + L2 LINE L2 2269 2370 -944 397 329 56 6 chr3 226547876 226548037 -976541 - MIR SINE MIR -90 172 4 310 294 94 47 chr3 226548228 226548398 -976180 - MIR SINE MIR -83 179 2 745 78 0 0 chr3 226548506 226548596 -975982 + AluSg/x SINE Alu 214 303 -9 1960 132 3 35 chr3 226551884 226552194 -972384 + AluJb SINE Alu 2 301 -11 21 89 0 0 chr3 226553343 226553399 -971179 + AT_rich Low_complexity Low_complexity 1 56 0 2052 140 0 13 chr3 226553478 226553786 -970792 - AluSx SINE Alu -7 305 2 971 191 30 61 chr3 226554391 226554653 -969925 + L1ME3 LINE L1 5887 6140 -22 2504 72 3 0 chr3 226554673 226554978 -969600 + AluSp SINE Alu 1 306 -7 311 270 24 56 chr3 226555027 226555153 -969425 + HAL1 LINE L1 1451 1572 -935 2139 113 0 16 chr3 226555159 226555469 -969109 + AluY SINE Alu 1 305 -6 205 156 0 246 chr3 226555750 226555872 -968706 + MIR SINE MIR 100 191 -71 218 170 38 0 chr3 226555899 226555952 -968626 + (TA)n Simple_repeat Simple_repeat 1 55 0 796 133 0 0 chr3 226556104 226556209 -968369 + U6 snRNA snRNA 1 105 -2 1607 147 42 25 chr3 226556381 226556667 -967911 + AluJo SINE Alu 3 293 -19 239 267 163 0 chr3 226556773 226556859 -967719 - MER113 DNA MER1_type? -218 303 204 1696 174 20 7 chr3 226556864 226557163 -967415 - AluJo SINE Alu -9 303 1 1268 133 5 5 chr3 226557289 226557477 -967101 - AluJo SINE Alu -124 188 1 436 203 19 108 chr3 226557477 226557635 -966943 + L2 LINE L2 3165 3308 -5 21 0 0 0 chr3 226559199 226559220 -965358 + AT_rich Low_complexity Low_complexity 1 21 0 748 249 93 5 chr3 226560078 226560283 -964295 + MER58A DNA MER1_type 2 224 0 223 297 108 46 chr3 226560372 226560567 -964011 - L3b LINE CR1 -114 1469 1263 233 91 0 0 chr3 226560863 226560896 -963682 - AluJo SINE Alu -18 284 252 1117 169 42 0 chr3 226560896 226561085 -963493 - AluJo SINE Alu -115 197 1 653 240 41 0 chr3 226561215 226561361 -963217 + FRAM SINE Alu 1 152 -14 2010 117 55 15 chr3 226561403 226561728 -962850 - L1MA3 LINE L1 0 6305 5968 1319 89 0 6 chr3 226561763 226561932 -962646 - AluSq SINE Alu -13 300 133 744 207 43 12 chr3 226562055 226562219 -962359 - MER105 DNA DNA -2 202 34 24 53 0 0 chr3 226562384 226562422 -962156 + AT_rich Low_complexity Low_complexity 1 38 0 217 360 20 87 chr3 226562584 226562734 -961844 - L3 LINE CR1 -1431 146 7 2244 107 0 7 chr3 226562780 226563088 -961490 - AluSx SINE Alu -6 306 1 230 0 33 0 chr3 226563772 226563802 -960776 + (TTTA)n Simple_repeat Simple_repeat 2 32 0 291 254 30 0 chr3 226564131 226564198 -960380 + MIR SINE MIR 73 141 -121 212 234 0 0 chr3 226564212 226564259 -960319 + L2 LINE L2 3263 3309 -4 2373 84 3 16 chr3 226564339 226564650 -959928 - AluSx SINE Alu -5 307 1 1524 122 69 92 chr3 226564714 226565017 -959561 - AluJb SINE Alu -14 298 3 2175 123 3 0 chr3 226565422 226565723 -958855 - AluSq SINE Alu -11 302 1 2111 103 0 31 chr3 226566533 226566852 -957726 + AluSx SINE Alu 1 310 0 547 143 0 128 chr3 226566927 226567060 -957518 + FLAM_A SINE Alu 18 133 -9 994 167 0 0 chr3 226567060 226567216 -957362 + AluSx SINE Alu 1 156 -156 315 280 64 24 chr3 226567240 226567365 -957213 - L1M4 LINE L1 -1715 4431 4302 * 321 274 126 22 chr3 226567360 226567495 -957083 - HAL1b LINE L1 -847 501 353 2232 108 0 0 chr3 226569039 226569326 -955252 + AluSx SINE Alu 1 287 -25 297 0 0 0 chr3 226569329 226569362 -955216 + (TAAA)n Simple_repeat Simple_repeat 2 34 0 1201 176 8 97 chr3 226569745 226570012 -954566 - AluJo SINE Alu -21 291 49 1736 181 3 13 chr3 226570062 226570377 -954201 + AluSx SINE Alu 1 312 0 1473 199 31 3 chr3 226570400 226570687 -953891 + AluJo SINE Alu 1 295 -17 2122 106 0 59 chr3 226570689 226571009 -953569 + AluSx SINE Alu 1 301 -11 2455 74 0 0 chr3 226571136 226571433 -953145 - AluSc SINE Alu -12 297 1 813 182 14 35 chr3 226572584 226572727 -951851 + FRAM SINE Alu 7 146 -30 243 0 0 0 chr3 226572730 226572757 -951821 + (CAAA)n Simple_repeat Simple_repeat 2 28 0 1908 121 10 64 chr3 226572762 226572897 -951681 + AluSx SINE Alu 1 142 -170 1881 122 0 8 chr3 226572897 226573160 -951418 + AluSq SINE Alu 1 261 -52 1908 121 10 64 chr3 226573160 226573337 -951241 + AluSx SINE Alu 142 296 -16 1759 166 10 3 chr3 226573339 226573476 -951102 + AluJb SINE Alu 1 136 -176 2500 74 0 7 chr3 226573476 226573786 -950792 + AluY SINE Alu 1 308 -3 1759 166 10 3 chr3 226573786 226573944 -950634 + AluJb SINE Alu 136 298 -14 1141 221 78 51 chr3 226574052 226574387 -950191 - MER2 DNA MER2_type 0 344 1 1715 237 123 14 chr3 226574389 226574886 -949692 + L1ME3A LINE L1 5612 6162 -8 2081 130 0 0 chr3 226576269 226576570 -948008 - AluSx SINE Alu -11 301 1 243 81 0 0 chr3 226576587 226576624 -947954 - Alu SINE Alu -95 38 2 646 317 68 90 chr3 226577397 226577980 -946598 - L2 LINE L2 -8 3264 2670 2122 138 3 0 chr3 226577980 226578284 -946294 + AluJo SINE Alu 1 305 -7 646 317 68 90 chr3 226578284 226578353 -946225 - L2 LINE L2 -602 2670 2601 694 195 81 0 chr3 226578353 226578476 -946102 + FLAM_A SINE Alu 1 133 0 2167 116 7 7 chr3 226578478 226578788 -945790 + AluSx SINE Alu 1 310 -2 646 317 68 90 chr3 226578788 226578969 -945609 - L2 LINE L2 -672 2600 2446 342 295 82 16 chr3 226579067 226579250 -945328 - L1MC4 LINE L1 0 8042 7848 288 243 178 0 chr3 226579295 226579402 -945176 + LTR16A1 LTR ERVL 172 297 -160 1203 157 102 17 chr3 226579407 226579643 -944935 + AluJo SINE Alu 42 297 -15 2254 116 0 0 chr3 226579644 226579945 -944633 + AluSc SINE Alu 1 301 -8 2731 120 8 27 chr3 226580041 226580442 -944136 + MER1A DNA MER1_type 1 393 -136 604 216 39 59 chr3 226580542 226580621 -943957 + MER58B DNA MER1_type 190 266 -2154 2264 85 3 26 chr3 226580621 226580926 -943652 - AluSp SINE Alu -14 299 2 604 216 39 59 chr3 226580926 226580999 -943579 + MER58B DNA MER1_type 266 339 -2 1508 190 47 0 chr3 226581080 226581359 -943219 + AluJb SINE Alu 1 292 -20 736 189 47 37 chr3 226581808 226581999 -942579 - L1MD3 LINE L1 -19 7976 7784 240 160 100 0 chr3 226584823 226584873 -939705 + MIR3 SINE MIR 132 186 -22 2290 29 103 4 chr3 226584926 226585207 -939371 + AluY SINE Alu 1 309 -2 407 222 213 0 chr3 226589344 226589452 -935126 - MER5A DNA MER1_type -3 186 56 2230 110 0 7 chr3 226589464 226589763 -934815 - AluSx SINE Alu -15 297 1 285 68 0 0 chr3 226589763 226589807 -934771 - Alu SINE Alu -256 44 1 * 351 92 15 15 chr3 226589807 226589851 -934727 - Alu SINE Alu -257 44 1 329 127 16 16 chr3 226589851 226589894 -934684 - AluS SINE Alu -259 44 2 641 122 10 0 chr3 226590133 226590231 -934347 + FRAM SINE Alu 67 165 -11 260 189 66 38 chr3 226590267 226590298 -934280 - MER113 DNA MER1_type? -407 114 85 2273 89 10 3 chr3 226590298 226590591 -933987 + AluSp SINE Alu 1 295 -18 260 189 66 38 chr3 226590591 226590665 -933913 - MER113 DNA MER1_type? -436 85 6 1335 188 70 13 chr3 226590781 226591090 -933488 - MLT1A1 LTR MaLR 0 365 6 408 114 86 29 chr3 226591167 226591237 -933341 - THE1C LTR MaLR -301 74 1 236 297 12 39 chr3 226591244 226591503 -933075 + L1M4 LINE L1 3206 3457 -2689 657 283 76 75 chr3 226591710 226592008 -932570 + L1M4 LINE L1 2460 2756 -3390 2418 61 3 35 chr3 226592008 226592318 -932260 - AluY SINE Alu -11 300 1 657 283 76 75 chr3 226592318 226592765 -931813 + L1M4 LINE L1 2756 3209 -2937 2085 99 136 6 chr3 226592765 226593097 -931481 - THE1C LTR MaLR 0 375 1 657 283 76 75 chr3 226593097 226593457 -931121 + L1M4 LINE L1 3209 3567 -2579 672 184 8 16 chr3 226593679 226593804 -930774 + FLAM_A SINE Alu 1 124 -9 10593 168 49 29 chr3 226593940 226595386 -929192 + L1 LINE L1 20 1233 -6332 2099 121 3 0 chr3 226595386 226595675 -928903 - AluSx SINE Alu -22 290 1 10593 168 49 29 chr3 226595675 226596937 -927641 + L1 LINE L1 1233 2468 -5097 4378 144 20 42 chr3 226596907 226597602 -926976 + L1 LINE L1 5892 6566 -999 * 1917 135 39 0 chr3 226597602 226597883 -926695 + AluSx SINE Alu 1 292 -20 4378 144 20 42 chr3 226597883 226598066 -926512 + L1 LINE L1 6566 6751 -814 670 172 9 9 chr3 226598066 226598182 -926396 + FLAM_C SINE Alu 2 117 -26 309 109 0 0 chr3 226598205 226598251 -926327 + (CATA)n Simple_repeat Simple_repeat 2 47 0 365 247 0 21 chr3 226598251 226598344 -926234 - L1MC4 LINE L1 -1339 6703 6613 5921 115 26 42 chr3 226598356 226598817 -925761 + L1MA3 LINE L1 5321 5788 -517 1894 96 88 0 chr3 226598817 226599078 -925500 + AluSx SINE Alu 1 284 -28 5921 115 26 42 chr3 226599078 226599617 -924961 + L1MA3 LINE L1 5788 6305 0 622 254 37 67 chr3 226599672 226599698 -924880 + L1M4 LINE L1 3761 3786 -2360 2009 101 49 14 chr3 226599698 226599986 -924592 + AluSp SINE Alu 1 298 -15 622 254 37 67 chr3 226599986 226600258 -924320 + L1M4 LINE L1 3786 4050 -2096 722 157 75 14 chr3 226600272 226600419 -924159 + LTR41 LTR ERVL 1 156 -617 319 266 89 0 chr3 226600538 226600662 -923916 + L1M4 LINE L1 3784 3918 -2228 1659 309 50 49 chr3 226600755 226601923 -922655 - ERVL LTR ERVL -3614 2079 841 335 274 28 28 chr3 226602956 226603062 -921516 - ERVL LTR ERVL -5035 619 514 317 289 40 35 chr3 226603123 226603324 -921254 + L1M4 LINE L1 4077 4278 -1868 2269 93 13 0 chr3 226603604 226603904 -920674 + AluSx SINE Alu 1 304 -8 1162 135 0 0 chr3 226604045 226604215 -920363 + FRAM SINE Alu 1 168 -8 2167 101 28 0 chr3 226604591 226604901 -919677 + AluSx SINE Alu 1 312 0 236 237 65 11 chr3 226605323 226605416 -919162 + L1M4 LINE L1 5707 5804 -374 2378 78 3 0 chr3 226605539 226605833 -918745 - AluSx SINE Alu -17 295 1 37 39 0 0 chr3 226605878 226605929 -918649 + AT_rich Low_complexity Low_complexity 1 51 0 2189 116 7 3 chr3 226605932 226606233 -918345 - AluSx SINE Alu -10 302 1 366 92 76 160 chr3 226607082 226607201 -917377 - FLAM_A SINE Alu 0 133 25 396 59 0 0 chr3 226607212 226607263 -917315 + (CGTG)n Simple_repeat Simple_repeat 4 54 0 320 248 165 9 chr3 226608461 226608570 -916008 - L2 LINE L2 -6 3266 3141 2357 90 3 3 chr3 226608775 226609086 -915492 + AluSx SINE Alu 1 311 -1 296 309 94 45 chr3 226609144 226609432 -915146 - L2 LINE L2 -357 2957 2656 2184 121 3 10 chr3 226609516 226609823 -914755 - AluSp SINE Alu -8 305 1 1680 153 57 11 chr3 226609886 226610167 -914411 - AluJo SINE Alu -18 294 1 237 33 0 0 chr3 226610167 226610197 -914381 + (TTG)n Simple_repeat Simple_repeat 1 30 0 1711 180 0 0 chr3 226610201 226610468 -914110 - AluJb SINE Alu -37 275 9 635 223 8 0 chr3 226610479 226610609 -913969 - FRAM SINE Alu -17 159 29 1479 74 78 18 chr3 226610689 226610906 -913672 + MER30 DNA MER1_type 1 230 0 1555 165 0 4 chr3 226610930 226611179 -913399 + AluJo SINE Alu 3 250 -62 227 225 0 112 chr3 226611299 226611486 -913092 + (GGGTG)n Simple_repeat Simple_repeat 3 168 0 2304 95 17 0 chr3 226611614 226611909 -912669 - AluSx SINE Alu -12 300 1 526 259 47 0 chr3 226612163 226612333 -912245 - MER5A DNA MER1_type 0 189 12 571 323 21 13 chr3 226612574 226612809 -911769 + LTR16B LTR ERVL 1 237 -227 362 243 10 29 chr3 226612873 226612976 -911602 + LTR16B LTR ERVL 364 464 0 334 214 31 20 chr3 226612976 226613074 -911504 - MIR SINE MIR -163 99 1 197 151 19 0 chr3 226613136 226613189 -911389 + A-rich Low_complexity Low_complexity 2 55 0 2343 107 3 0 chr3 226613243 226613551 -911027 - AluSx SINE Alu -3 309 1 2928 65 0 5 chr3 226613772 226614143 -910435 + L1PA6 LINE L1 5782 6150 -4 418 235 142 6 chr3 226614148 226614331 -910247 - L1ME4a LINE L1 -73 6048 5841 827 275 100 99 chr3 226614338 226614367 -910211 + HAL1 LINE L1 25 52 -2455 2261 120 0 3 chr3 226614367 226614675 -909903 - AluSx SINE Alu -5 307 1 827 275 100 99 chr3 226614675 226615514 -909064 + HAL1 LINE L1 52 894 -1613 1708 142 19 15 chr3 226615515 226615782 -908796 + AluJo SINE Alu 1 268 -44 195 42 0 0 chr3 226615817 226615841 -908737 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 462 196 65 9 chr3 226615850 226615957 -908621 + AluSg SINE Alu 2 114 -196 217 0 0 57 chr3 226615958 226615993 -908585 + (CAAAA)n Simple_repeat Simple_repeat 2 34 0 1641 138 39 11 chr3 226616098 226616358 -908220 + AluJb SINE Alu 1 267 -45 1592 152 40 18 chr3 226616511 226616788 -907790 + AluJb SINE Alu 28 310 -2 1204 116 6 0 chr3 226616899 226617063 -907515 - AluSg SINE Alu -145 165 1 471 227 113 7 chr3 226617094 226617235 -907343 + FAM SINE Alu 16 171 -14 232 258 0 0 chr3 226617253 226617319 -907259 + A-rich Low_complexity Low_complexity 1 66 0 2379 80 0 3 chr3 226617320 226617620 -906958 + AluSq SINE Alu 1 299 -14 249 297 40 0 chr3 226618500 226618574 -906004 + L2 LINE L2 3195 3271 -1 303 225 130 14 chr3 226618860 226618992 -905586 + MIR SINE MIR 26 171 -37 586 108 0 0 chr3 226619029 226619112 -905466 - AluSg/x SINE Alu -16 294 212 2242 99 0 7 chr3 226619290 226619582 -904996 - AluSx SINE Alu -22 290 1 570 186 17 29 chr3 226619686 226619973 -904605 + CT-rich Low_complexity Low_complexity 1 283 0 1450 187 8 8 chr3 226619977 226620239 -904339 - AluJo SINE Alu -14 298 37 311 242 170 33 chr3 226620472 226620625 -903953 - MIR3 SINE MIR -7 201 28 1217 27 0 14 chr3 226620683 226620829 -903749 + AluY SINE Alu 168 311 0 2146 54 91 0 chr3 226621049 226621325 -903253 + AluSp SINE Alu 1 301 -12 1373 145 13 18 chr3 226621850 226622077 -902501 + AluJb SINE Alu 84 309 -3 2328 89 0 32 chr3 226622668 226622847 -901731 - AluSp SINE Alu -9 304 121 264 30 0 0 chr3 226622847 226622880 -901698 + (TTTTA)n Simple_repeat Simple_repeat 3 35 0 2423 64 0 0 chr3 226622880 226623161 -901417 - AluY SINE Alu -30 281 1 2328 89 0 32 chr3 226623161 226623294 -901284 - AluSp SINE Alu -190 123 1 2642 207 23 8 chr3 226623433 226623959 -900619 + MLT1F LTR MaLR 1 534 -8 2683 29 0 13 chr3 226624567 226624875 -899703 + AluY SINE Alu 1 304 -7 2156 108 41 0 chr3 226625227 226625522 -899056 - AluSq SINE Alu -4 309 3 24 0 0 0 chr3 226625643 226625667 -898911 + AT_rich Low_complexity Low_complexity 1 24 0 662 260 60 40 chr3 226625713 226626060 -898518 + L2 LINE L2 2688 3040 -232 528 291 114 0 chr3 226626117 226626292 -898286 + LTR33 LTR ERVL 141 335 -186 2299 105 7 0 chr3 226626342 226626646 -897932 - AluSx SINE Alu -6 306 1 212 307 143 52 chr3 226626715 226626946 -897632 + L2 LINE L2 3019 3270 -2 218 200 250 0 chr3 226627172 226627252 -897326 + L2 LINE L2 2448 2547 -767 475 115 0 0 chr3 226827252 226827313 -697265 - AluS SINE Alu -251 62 2 1060 261 163 14 chr3 226828298 226828374 -696204 - MLT1J LTR MaLR 0 511 448 2438 94 0 0 chr3 226828374 226828671 -695907 + AluSg SINE Alu 1 297 -13 1060 261 163 14 chr3 226828671 226829030 -695548 - MLT1J LTR MaLR -63 448 11 577 158 0 0 chr3 226829246 226829341 -695237 - AluJb SINE Alu -16 296 202 653 329 117 78 chr3 226830132 226830469 -694109 + L3 LINE CR1 813 1135 -442 2029 134 10 0 chr3 226830469 226830759 -693819 + AluSx SINE Alu 1 293 -19 653 329 117 78 chr3 226830759 226831156 -693422 + L3 LINE CR1 1135 1576 -1 493 236 62 0 chr3 226831162 226831306 -693272 - L1MD1 LINE L1 0 6242 6090 234 325 39 112 chr3 226831340 226831546 -693032 - L2 LINE L2 -90 3182 2992 1809 153 0 51 chr3 226831660 226831974 -692604 - AluJb SINE Alu -14 298 1 413 259 78 98 chr3 226832542 226832747 -691831 - MIR3 SINE MIR -3 205 5 2358 83 3 3 chr3 226833649 226833939 -690639 - AluSp SINE Alu -23 290 1 1645 146 68 14 chr3 226834843 226835123 -689455 + AluJb SINE Alu 1 295 -17 812 96 19 26 chr3 226835123 226835279 -689299 + (GGGAA)n Simple_repeat Simple_repeat 2 156 0 611 210 86 6 chr3 226835331 226835493 -689085 - MER96 DNA MER1_type 0 175 1 2462 83 3 13 chr3 226835505 226835817 -688761 - AluY SINE Alu -2 309 1 252 252 165 17 chr3 226835874 226835989 -688589 + MER5B DNA MER1_type 36 167 -11 218 208 198 47 chr3 226838468 226838574 -686004 - MIR3 SINE MIR -36 172 51 2111 96 53 0 chr3 226838702 226838983 -685595 + AluSx SINE Alu 1 296 -16 438 308 142 24 chr3 226839826 226839995 -684583 + MER91A DNA MER1_type 1 189 -7 1619 199 0 17 chr3 226840359 226840661 -683917 + AluJb SINE Alu 3 299 -13 497 272 47 31 chr3 226840739 226840930 -683648 - L3 LINE CR1 -87 1490 1297 258 367 23 57 chr3 226841446 226841623 -682955 + L2 LINE L2 3102 3272 0 226 65 22 22 chr3 226841856 226841902 -682676 + (CAAAA)n Simple_repeat Simple_repeat 2 47 0 2435 95 0 13 chr3 226842188 226842505 -682073 + AluSq SINE Alu 1 313 0 199 317 33 11 chr3 226842805 226842883 -681695 - MIR3 SINE MIR -20 242 158 1024 181 24 29 chr3 226842883 226843093 -681485 + MER3 DNA MER1_type 1 209 0 199 317 33 11 chr3 226843093 226843134 -681444 - MIR3 SINE MIR -104 158 119 2055 186 84 46 chr3 226843435 226843504 -681074 - MLT1F LTR MaLR 0 542 477 2417 126 11 32 chr3 226843504 226843876 -680702 - THE1B LTR MaLR 0 364 1 11695 88 30 3 chr3 226843876 226845414 -679164 - THE1B-int LTR MaLR 0 1580 1 1994 100 137 30 chr3 226845414 226845743 -678835 - THE1B LTR MaLR 0 364 1 2055 186 84 46 chr3 226845743 226846193 -678385 - MLT1F LTR MaLR -64 478 1 366 289 45 49 chr3 226846193 226846397 -678181 - MIR SINE MIR -52 210 2 2452 65 3 0 chr3 226846464 226846754 -677824 - AluY SINE Alu -7 304 14 2473 87 0 3 chr3 226846930 226847239 -677339 + AluSc SINE Alu 1 308 -1 349 135 0 0 chr3 226847253 226847305 -677273 + 5S rRNA rRNA 4 55 -66 353 287 140 29 chr3 226847325 226847461 -677117 + L1M4 LINE L1 4067 4217 -1929 1684 190 63 14 chr3 226847664 226848012 -676566 - MLT1A1 LTR MaLR 0 365 1 304 354 23 29 chr3 226848296 226848471 -676107 + MIR SINE MIR 39 212 -50 2227 103 7 13 chr3 226848797 226849097 -675481 - AluSq SINE Alu -15 298 1 285 266 35 21 chr3 226850363 226850506 -674072 + (TCTCTG)n Simple_repeat Simple_repeat 3 147 0 208 204 0 21 chr3 226850520 226850613 -673965 + CT-rich Low_complexity Low_complexity 2 92 0 438 202 11 69 chr3 226850622 226850810 -673768 + (TCTCTG)n Simple_repeat Simple_repeat 2 178 0 627 199 72 33 chr3 226851508 226851699 -672879 - MIR3 SINE MIR -52 156 8 322 324 49 7 chr3 226852675 226852817 -671761 - L2 LINE L2 -5 3308 3161 2128 94 25 0 chr3 226852848 226853125 -671453 - AluSg SINE Alu -26 284 1 221 225 0 0 chr3 226853126 226853166 -671412 - L2 LINE L2 -11 3302 3263 285 304 22 22 chr3 226853288 226853380 -671198 + L2 LINE L2 3138 3229 -43 192 40 0 0 chr3 226853502 226853527 -671051 + (TC)n Simple_repeat Simple_repeat 1 25 0 324 0 0 0 chr3 226853530 226853566 -671012 + (CA)n Simple_repeat Simple_repeat 1 36 0 409 140 6 79 chr3 226853713 226853831 -670747 + MLT1J LTR MaLR 84 257 -341 384 245 21 0 chr3 226854180 226854274 -670304 + L1MC5 LINE L1 7762 7857 -104 2345 181 36 2 chr3 226854274 226854722 -669856 + L1MB2 LINE L1 5707 6169 -2 2027 128 10 10 chr3 226854727 226855024 -669554 + AluSx SINE Alu 1 297 -15 2257 102 3 0 chr3 226855660 226855953 -668625 - AluSx SINE Alu -18 294 1 447 96 0 27 chr3 226856378 226856451 -668127 + Alu SINE Alu 1 71 -247 343 279 57 25 chr3 226856517 226856639 -667939 + L1MC4 LINE L1 6578 6703 -1339 * 364 301 0 65 chr3 226856551 226856674 -667904 - L1MC4 LINE L1 -1339 6703 6589 527 161 12 0 chr3 226856743 226856824 -667754 - AluSg/x SINE Alu -126 184 103 2273 97 0 3 chr3 226857321 226857609 -666969 - AluSx SINE Alu -19 293 7 241 296 49 49 chr3 226857683 226857825 -666753 + L1MC4a LINE L1 4817 4958 -1188 2225 130 7 0 chr3 226857843 226858151 -666427 + AluSx SINE Alu 1 310 -2 513 248 40 30 chr3 226858164 226858541 -666037 + L1MC4a LINE L1 5175 5582 -539 1961 124 14 7 chr3 226858663 226858953 -665625 + AluSc SINE Alu 15 306 -3 305 278 76 25 chr3 226858953 226859151 -665427 + L1MC4a LINE L1 5726 5933 -1875 204 309 168 20 chr3 226859364 226859513 -665065 - L2 LINE L2 0 3313 3143 701 132 24 0 chr3 226859634 226859801 -664777 + (TG)n Simple_repeat Simple_repeat 1 171 0 375 169 47 23 chr3 226859895 226860067 -664511 + (TG)n Simple_repeat Simple_repeat 1 176 0 181 314 0 0 chr3 226860322 226860373 -664205 - L2 LINE L2 -2 3270 3220 28 0 0 0 chr3 226860429 226860457 -664121 + AT_rich Low_complexity Low_complexity 1 28 0 276 329 54 61 chr3 226860496 226860791 -663787 - L2 LINE L2 -519 2795 2503 346 251 162 0 chr3 226861671 226861838 -662740 + LTR33 LTR ERVL 1 194 -327 1686 216 59 30 chr3 226861885 226862165 -662413 - MER69 DNA AcHobo -72 2454 2184 2326 92 0 0 chr3 226862165 226862474 -662104 - AluSx SINE Alu 0 309 1 1686 216 59 30 chr3 226862474 226862733 -661845 - MER69 DNA AcHobo -342 2184 1898 275 228 0 0 chr3 226862782 226862839 -661739 - MER69 DNA AcHobo -587 1939 1883 393 281 55 14 chr3 226862921 226863067 -661511 + LTR16A1 LTR ERVL 306 457 0 652 258 28 0 chr3 226863068 226863246 -661332 - MER69 DNA AcHobo -640 1886 1704 1322 216 178 19 chr3 226863264 226863614 -660964 - MER69 DNA AcHobo -468 758 465 2325 115 0 0 chr3 226863614 226863910 -660668 + AluSx SINE Alu 1 296 -16 1322 216 178 19 chr3 226863910 226864186 -660392 - MER69 DNA AcHobo -761 465 1 379 259 123 12 chr3 226864290 226864452 -660126 + LTR33 LTR ERVL 335 514 -7 251 222 144 44 chr3 226865513 226865603 -658975 + U13 snRNA snRNA 4 102 -2 1651 82 5 0 chr3 226865749 226865957 -658621 + AluSx SINE Alu 6 214 -98 1034 111 14 0 chr3 226865957 226866101 -658477 + AluSg/x SINE Alu 165 310 -2 420 279 37 15 chr3 226866301 226866437 -658141 + MIR3 SINE MIR 38 176 -32 2464 77 3 0 chr3 226866437 226866737 -657841 + AluSg SINE Alu 2 302 -8 294 311 22 0 chr3 226866820 226866932 -657646 + MIR SINE MIR 9 128 -80 589 288 43 48 chr3 226867510 226867752 -656826 + MIR SINE MIR 3 249 -13 185 367 13 25 chr3 226868086 226868165 -656413 + L2 LINE L2 3009 3086 -186 503 279 52 29 chr3 226868569 226868741 -655837 - MIR SINE MIR -39 223 48 2416 88 3 3 chr3 226869852 226870159 -654419 + AluSx SINE Alu 1 307 -5 372 22 0 0 chr3 226871069 226871114 -653464 + (CTG)n Simple_repeat Simple_repeat 2 46 0 1451 74 21 0 chr3 226871543 226871732 -652846 + L1PA7 LINE L1 5962 6154 0 1942 96 14 0 chr3 226871988 226872270 -652308 + L1MA1 LINE L1 6017 6302 0 330 115 33 0 chr3 226872300 226872361 -652217 + MER53 DNA DNA 125 187 -2 647 298 75 94 chr3 226872367 226872808 -651770 + L2 LINE L2 1945 2364 -950 1953 107 0 8 chr3 226872808 226873061 -651517 - AluSg SINE Alu -59 251 1 647 298 75 94 chr3 226873061 226873455 -651123 + L2 LINE L2 2364 2764 -550 185 355 81 48 chr3 226873517 226873703 -650875 + L2 LINE L2 2871 3062 -210 245 244 0 56 chr3 226873930 226874020 -650558 - L1ME4a LINE L1 -66 6055 5971 2247 102 0 32 chr3 226874116 226874431 -650147 + AluSc SINE Alu 1 305 -4 2026 103 4 0 chr3 226874559 226874820 -649758 + AluSp SINE Alu 37 298 -15 303 265 88 0 chr3 226875059 226875161 -649417 + L1ME4a LINE L1 5967 6077 -44 2149 109 3 0 chr3 226875897 226876203 -648375 - AluSx SINE Alu 0 307 1 259 255 0 0 chr3 226876814 226876865 -647713 - L2 LINE L2 0 3313 3263 209 409 11 11 chr3 226876961 226877049 -647529 - L2 LINE L2 -79 3193 3106 2269 110 0 0 chr3 226877387 226877687 -646891 - AluSx SINE Alu -12 300 1 2330 92 3 0 chr3 226877768 226878087 -646491 + AluSx SINE Alu 1 295 -17 2331 97 0 6 chr3 226879504 226879815 -644763 - AluSg SINE Alu -1 309 1 2372 85 0 0 chr3 226880419 226880714 -643864 + AluSq SINE Alu 1 295 -18 852 49 0 0 chr3 226880714 226880816 -643762 + L1PA5 LINE L1 6052 6153 -1 195 42 0 0 chr3 226880821 226880845 -643733 + (TAAAA)n Simple_repeat Simple_repeat 3 26 0 2178 79 6 31 chr3 226880972 226881289 -643289 - AluSc SINE Alu 0 309 1 234 355 136 0 chr3 226881487 226881597 -642981 - L2 LINE L2 -1 3271 3147 519 213 70 54 chr3 226881867 226881923 -642655 - L1MD3 LINE L1 -20 7975 7921 2215 113 0 0 chr3 226881923 226882214 -642364 + AluSx SINE Alu 7 297 -15 519 213 70 54 chr3 226882214 226882908 -641670 - L1MD3 LINE L1 -74 7921 5574 2091 141 0 3 chr3 226882915 226883228 -641350 - AluSx SINE Alu 0 312 1 1744 130 7 22 chr3 226883228 226883498 -641080 - AluJb SINE Alu -18 294 29 1767 191 31 64 chr3 226883517 226884003 -640575 - L1ME1 LINE L1 -5 6161 5692 269 244 81 23 chr3 226884250 226884336 -640242 - MIR SINE MIR -109 153 63 3653 244 70 50 chr3 226884668 226885094 -639484 + L1MEc LINE L1 1014 1430 -4785 2037 116 4 0 chr3 226885094 226885371 -639207 + AluSq SINE Alu 8 285 -28 3653 244 70 50 chr3 226885371 226886161 -638417 + L1MEc LINE L1 1430 2203 -4012 189 74 0 0 chr3 226886161 226886188 -638390 + (TTATA)n Simple_repeat Simple_repeat 3 29 0 3653 244 70 50 chr3 226886188 226886975 -637603 + L1MEc LINE L1 2203 3013 -3202 675 309 46 0 chr3 226887171 226887388 -637190 - MIR SINE MIR -32 230 4 336 236 101 0 chr3 226887652 226887741 -636837 + MIR SINE MIR 74 171 -91 21 0 0 0 chr3 226887857 226887878 -636700 + AT_rich Low_complexity Low_complexity 1 21 0 2967 168 34 21 chr3 226888378 226888895 -635683 + L1MB2 LINE L1 5601 6127 -44 2106 107 7 13 chr3 226888895 226889193 -635385 + AluSg SINE Alu 1 296 -14 2967 168 34 21 chr3 226889193 226889236 -635342 + L1MB2 LINE L1 6127 6168 -3 208 267 33 89 chr3 226889410 226889500 -635078 - MIR SINE MIR -91 117 33 322 223 110 23 chr3 226889726 226889922 -634656 + HAL1b LINE L1 1187 1334 -14 3934 186 65 138 chr3 226890383 226891371 -633207 + L1MEc LINE L1 3390 4170 -2045 1383 111 0 5 chr3 226891371 226891560 -633018 + L1PA15 LINE L1 5961 6148 -17 3934 186 65 138 chr3 226891560 226892510 -632068 + L1MEc LINE L1 4170 5187 -1028 1354 191 66 50 chr3 226892497 226892649 -631929 + L1MA9 LINE L1 5944 6092 -220 * 2161 131 0 0 chr3 226892649 226892947 -631631 + AluSg SINE Alu 1 298 -12 1354 191 66 50 chr3 226892947 226893156 -631422 + L1MA9 LINE L1 6092 6311 -1 26 30 0 0 chr3 226893260 226893293 -631285 + AT_rich Low_complexity Low_complexity 1 33 0 228 403 74 13 chr3 226893678 226893827 -630751 + L2 LINE L2 3050 3207 -65 367 86 52 0 chr3 226893936 226893994 -630584 - AluSp/q SINE Alu -8 295 235 825 94 0 0 chr3 226894296 226894402 -630176 + AluSq/x SINE Alu 2 107 -205 1745 120 85 11 chr3 226894406 226894689 -629889 + AluSx SINE Alu 1 304 -8 22 0 0 0 chr3 226895923 226895945 -628633 + AT_rich Low_complexity Low_complexity 1 22 0 181 245 0 0 chr3 226896180 226896229 -628349 + L2 LINE L2 3263 3311 -2 1831 174 82 34 chr3 226896303 226896589 -627989 - MER89 LTR ERV1 0 559 288 2580 36 0 7 chr3 226896589 226896891 -627687 + AluY SINE Alu 1 300 -11 1831 174 82 34 chr3 226896891 226897042 -627536 - MER89 LTR ERV1 -271 288 1 2139 118 10 0 chr3 226897147 226897444 -627134 - AluSx SINE Alu -12 300 1 1130 141 12 12 chr3 226897633 226897803 -626775 - AluSx SINE Alu -142 170 1 250 229 145 12 chr3 226897803 226897886 -626692 - HAL1 LINE L1 -1626 881 788 1970 113 32 3 chr3 226897926 226898210 -626368 - AluSx SINE Alu -20 292 1 3866 176 28 30 chr3 226898254 226899028 -625550 - L1MB8 LINE L1 0 6178 5406 256 335 134 20 chr3 226899084 226899338 -625240 - HAL1 LINE L1 -1854 653 371 2364 101 3 0 chr3 226899343 226899649 -624929 - AluSx SINE Alu -5 307 1 242 213 16 0 chr3 226901217 226901278 -623300 + CT-rich Low_complexity Low_complexity 1 62 0 207 330 58 55 chr3 226901332 226901534 -623044 + MIR3 SINE MIR 2 196 -61 365 301 211 49 chr3 226901895 226902407 -622171 - L3 LINE CR1 -23 1554 960 531 37 37 12 chr3 226902816 226902898 -621680 + (TAGA)n Simple_repeat Simple_repeat 3 86 0 2332 86 3 3 chr3 226903045 226903349 -621229 + AluSc SINE Alu 1 304 -5 329 172 16 47 chr3 226903381 226903445 -621133 + MLT1F LTR MaLR 1 62 -480 1289 190 48 149 chr3 226903482 226903738 -620840 + MLT1A2 LTR MaLR 1 201 -173 2451 81 7 3 chr3 226903738 226904046 -620532 - AluSg1 SINE Alu 0 309 1 1289 190 48 149 chr3 226904046 226904205 -620373 + MLT1A2 LTR MaLR 201 374 0 * 1943 193 14 63 chr3 226904205 226904640 -619938 + MLT1F LTR MaLR 128 540 -2 415 244 35 26 chr3 226905405 226905520 -619058 + MIR SINE MIR 19 134 -74 273 246 181 6 chr3 226905704 226905795 -618783 + MIR SINE MIR 20 122 -86 264 59 0 0 chr3 226906077 226906111 -618467 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 205 185 0 56 chr3 226906327 226906381 -618197 + C-rich Low_complexity Low_complexity 3 53 0 21 0 0 0 chr3 226907014 226907035 -617543 + GC_rich Low_complexity Low_complexity 1 21 0 25 0 0 0 chr3 226907133 226907158 -617420 + GC_rich Low_complexity Low_complexity 1 25 0 23 0 0 0 chr3 226908387 226908410 -616168 + AT_rich Low_complexity Low_complexity 1 23 0 281 286 24 12 chr3 226909119 226909203 -615375 - MIR3 SINE MIR -3 205 121 187 306 153 27 chr3 226909253 226909364 -615214 + MIR3 SINE MIR 30 154 -54 237 317 30 0 chr3 226909831 226909932 -614646 - L1MC5 LINE L1 -45 7916 7813 214 186 0 0 chr3 226910121 226910164 -614414 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 2364 78 3 37 chr3 226910358 226910680 -613898 - AluY SINE Alu 0 311 1 3830 178 28 9 chr3 226912456 226913201 -611377 - L1MB2 LINE L1 -36 6135 5375 334 326 44 30 chr3 226913266 226913401 -611177 - MIR SINE MIR -67 141 8 369 0 0 0 chr3 226913708 226913749 -610829 + (TG)n Simple_repeat Simple_repeat 2 42 0 2126 224 119 53 chr3 226914035 226914133 -610445 - L1MC4 LINE L1 -371 7671 7581 1501 116 205 0 chr3 226914133 226914392 -610186 - AluJb SINE Alu 0 312 1 2126 224 119 53 chr3 226914392 226915108 -609470 - L1MC4 LINE L1 -461 7581 6803 232 207 52 0 chr3 226915370 226915428 -609150 - L1MC4 LINE L1 -635 7407 7347 22 0 0 0 chr3 226915540 226915562 -609016 + AT_rich Low_complexity Low_complexity 1 22 0 306 73 0 0 chr3 226915684 226915725 -608853 + (TG)n Simple_repeat Simple_repeat 2 42 0 387 0 0 0 chr3 226916282 226916325 -608253 + (TATG)n Simple_repeat Simple_repeat 2 44 0 2336 96 10 0 chr3 226916325 226916627 -607951 - AluSp SINE Alu -8 305 1 2425 94 0 0 chr3 226916674 226916983 -607595 - AluSc SINE Alu 0 309 1 437 271 130 65 chr3 226916983 226917430 -607148 - L1MC4 LINE L1 -328 5793 5316 425 144 116 0 chr3 226917792 226917887 -606691 - L1MC2 LINE L1 -2 7777 6256 1284 192 80 14 chr3 226917899 226918175 -606403 + AluSx SINE Alu 1 294 -18 585 237 89 7 chr3 226918187 226918322 -606256 + AluJb SINE Alu 146 291 -21 4278 170 68 29 chr3 226918323 226918492 -606086 - L1MC2 LINE L1 -130 6214 6053 1779 152 145 7 chr3 226918492 226918788 -605790 + MER1B DNA MER1_type 1 337 0 4278 170 68 29 chr3 226918788 226919609 -604969 - L1MC2 LINE L1 -291 6053 5188 263 200 0 33 chr3 226920726 226920786 -603792 + (TG)n Simple_repeat Simple_repeat 2 59 0 228 211 53 0 chr3 226920786 226920843 -603735 - MIR SINE MIR -73 189 130 2360 90 3 0 chr3 226920908 226921209 -603369 + AluSx SINE Alu 1 302 -10 22 35 0 0 chr3 226921545 226921574 -603004 + AT_rich Low_complexity Low_complexity 1 29 0 26 30 0 0 chr3 226921613 226921646 -602932 + AT_rich Low_complexity Low_complexity 1 33 0 246 332 251 11 chr3 226921819 226922006 -602572 - MIR SINE MIR -1 261 30 27 0 0 0 chr3 226922455 226922482 -602096 + AT_rich Low_complexity Low_complexity 1 27 0 426 326 53 21 chr3 226923207 226923394 -601184 - MIR3 SINE MIR -5 203 11 1154 217 157 26 chr3 226923586 226923734 -600844 + MSTD LTR MaLR 1 128 -268 2043 97 7 55 chr3 226923734 226924043 -600535 + AluSq SINE Alu 5 298 -15 1154 217 157 26 chr3 226924043 226924244 -600334 + MSTD LTR MaLR 128 396 0 4749 110 61 3 chr3 226924454 226924697 -599881 + L1MA4 LINE L1 5532 5759 -541 243 0 0 0 chr3 226924697 226924724 -599854 + (CA)n Simple_repeat Simple_repeat 2 28 0 4749 110 61 3 chr3 226924724 226925198 -599380 + L1MA4 LINE L1 5759 6291 -9 239 328 84 0 chr3 226926433 226926552 -598026 + HAL1b LINE L1 1135 1263 -85 1445 147 9 112 chr3 226926554 226926750 -597828 - AluJo SINE Alu 0 312 97 2228 117 7 0 chr3 226926750 226927058 -597520 - AluSx SINE Alu -2 310 1 1445 147 9 112 chr3 226927058 226927080 -597498 - AluJo SINE Alu -214 98 2 664 172 0 47 chr3 226927080 226927208 -597370 - FLAM_A SINE Alu -11 122 1 1809 153 0 33 chr3 226927420 226927720 -596858 + AluSx SINE Alu 1 290 -22 2099 129 0 16 chr3 226927869 226928186 -596392 + AluJb SINE Alu 1 312 0 243 176 118 15 chr3 226928509 226928577 -596001 + L1P LINE L1 5354 5428 -737 305 335 163 5 chr3 226928757 226928978 -595600 + L1MC4a LINE L1 5678 5933 -1875 5347 153 58 19 chr3 226929044 226929854 -594724 - L1MA4 LINE L1 -11 6289 5512 2082 124 3 10 chr3 226929854 226930160 -594418 - AluSg SINE Alu -6 304 1 5347 153 58 19 chr3 226930160 226930533 -594045 - L1MA4 LINE L1 -788 5512 5155 273 119 0 0 chr3 226930533 226930575 -594003 + (TCGTG)n Simple_repeat Simple_repeat 4 45 0 5347 153 58 19 chr3 226930575 226931317 -593261 - L1MA4 LINE L1 -1145 5155 4303 304 298 39 10 chr3 226931429 226931533 -593045 - HAL1 LINE L1 -2375 132 26 2160 109 33 0 chr3 226931533 226931835 -592743 + AluSx SINE Alu 1 312 0 276 30 0 0 chr3 226931849 226931882 -592696 + (CA)n Simple_repeat Simple_repeat 2 34 0 618 167 10 21 chr3 226932040 226932180 -592398 + L1MB7 LINE L1 6039 6180 0 * 1074 222 108 28 chr3 226932166 226932518 -592060 - L1ME3A LINE L1 -106 6064 5685 815 219 6 0 chr3 226932700 226932864 -591714 - FRAM SINE Alu 0 166 2 321 273 107 54 chr3 226933162 226933367 -591211 - L1MC4 LINE L1 -68 7974 7759 324 226 41 68 chr3 226933529 226933675 -590903 - LTR16A1 LTR ERVL 0 457 316 317 228 21 76 chr3 226934008 226934235 -590343 - L1MC4 LINE L1 -412 7630 7307 258 296 64 30 chr3 226934227 226934430 -590148 - L1MC4a LINE L1 -414 7394 7185 * 259 195 63 47 chr3 226934446 226934574 -590004 - L1MC4 LINE L1 -740 7221 7094 300 315 55 24 chr3 226934766 226934931 -589647 - L1MC4 LINE L1 -1035 7007 6838 25 83 0 0 chr3 226935115 226935175 -589403 + AT_rich Low_complexity Low_complexity 1 60 0 3577 158 64 26 chr3 226935671 226936433 -588145 + Tigger3b DNA MER2_type 1 791 -440 1230 132 28 24 chr3 226936433 226936645 -587933 + AluJo SINE Alu 82 294 -18 25 0 0 0 chr3 226937866 226937891 -586687 + AT_rich Low_complexity Low_complexity 1 25 0 667 293 80 8 chr3 226938083 226938459 -586119 - L1MEc LINE L1 -5004 1392 990 989 192 5 32 chr3 226938459 226938678 -585900 - AluJo SINE Alu -21 291 79 2384 215 149 13 chr3 226938719 226939015 -585563 - L1MEc LINE L1 -5422 974 720 2254 101 0 0 chr3 226939015 226939311 -585267 - AluSg SINE Alu -14 296 1 2384 215 149 13 chr3 226939311 226939730 -584848 - L1MEc LINE L1 -5676 720 161 1310 160 12 45 chr3 226940221 226940354 -584224 - MER46A DNA MER2_type -2495 236 113 2237 114 0 10 chr3 226940354 226940661 -583917 + AluSq SINE Alu 1 304 -9 1310 160 12 45 chr3 226940661 226940771 -583807 - MER46A DNA MER2_type -2618 113 1 207 240 101 124 chr3 226941187 226941266 -583312 - L2 LINE L2 0 3272 3196 2261 119 0 0 chr3 226941266 226941576 -583002 - AluSx SINE Alu -2 310 1 207 240 101 124 chr3 226941576 226941625 -582953 - L2 LINE L2 -76 3196 3147 205 333 62 12 chr3 226941636 226941717 -582861 - MIR3 SINE MIR -8 200 116 2174 177 123 149 chr3 226942237 226943095 -581483 - MER21B LTR ERV1 -27 836 1 240 217 83 33 chr3 226943170 226943230 -581348 - MIR SINE MIR -40 222 160 259 215 127 0 chr3 226943317 226943396 -581182 - MIR SINE MIR 0 262 174 953 184 0 0 chr3 226943632 226943790 -580788 - AluJ SINE Alu -24 288 131 279 0 0 0 chr3 226944295 226944326 -580252 + (T)n Simple_repeat Simple_repeat 1 31 0 24 0 0 0 chr3 226946136 226946160 -578418 + AT_rich Low_complexity Low_complexity 1 24 0 21 36 0 0 chr3 226947843 226947871 -576707 + AT_rich Low_complexity Low_complexity 1 28 0 226 167 24 0 chr3 226948705 226948747 -575831 + MER58B DNA MER1_type 1 43 -298 * 786 214 0 0 chr3 226948742 226948887 -575691 + MER58B DNA MER1_type 197 341 0 1170 233 197 27 chr3 226949143 226949590 -574988 - L1ME3 LINE L1 -29 6133 5611 1970 107 24 40 chr3 226950008 226950306 -574272 - AluSx SINE Alu -19 293 1 229 211 35 35 chr3 226950321 226950435 -574143 - L1M4c LINE L1 -5295 1664 1551 325 228 110 66 chr3 226950437 226950573 -574005 - L1M4c LINE L1 -5345 1514 1373 1883 147 111 26 chr3 226951115 226951145 -573433 - L1MC/D LINE L1 -561 5681 5655 1659 175 50 21 chr3 226951145 226951523 -573055 - L1MD1 LINE L1 0 6242 5854 1883 147 111 26 chr3 226951523 226952125 -572453 - L1MC/D LINE L1 -587 5655 4984 330 89 0 0 chr3 226952128 226952184 -572394 - L1MB4 LINE L1 0 6180 6125 422 227 27 18 chr3 226952223 226952333 -572245 - L1MB3 LINE L1 -42 6141 6031 2024 202 40 21 chr3 226952347 226952817 -571761 - L1MB3 LINE L1 -46 6137 5659 5669 198 83 70 chr3 226953178 226953853 -570725 - L1 LINE L1 -789 5539 4874 625 121 129 9 chr3 226953853 226953969 -570609 - AluJ SINE Alu -179 133 4 5669 198 83 70 chr3 226953969 226954070 -570508 - L1 LINE L1 -1454 4874 4776 1754 136 50 0 chr3 226954070 226954349 -570229 - AluSx SINE Alu -4 308 16 5669 198 83 70 chr3 226954349 226954478 -570100 - L1 LINE L1 -1552 4776 4650 2232 110 0 3 chr3 226954478 226954787 -569791 - AluSg SINE Alu 0 310 3 5669 198 83 70 chr3 226954787 226956079 -568499 - L1 LINE L1 -1678 4650 3218 547 190 0 0 chr3 226956081 226956181 -568397 - FRAM SINE Alu -16 160 61 1123 204 63 8 chr3 226956356 226956597 -567981 + LTR10B LTR ERV1 312 537 -10 1877 243 75 74 chr3 226956603 226957614 -566964 + HERVI LTR ERV1 1 1012 -6773 2093 237 30 17 chr3 226957739 226958267 -566311 + BaEV-int LTR ERV1 856 1390 -5259 * 7905 228 11 27 chr3 226958253 226960527 -564051 + BaEV-int LTR ERV1 2608 5827 -1958 5456 186 10 11 chr3 226960538 226961523 -563055 + BaEV-int LTR ERV1 6414 7397 -388 520 292 39 6 chr3 226961506 226961684 -562894 + BaEV-int LTR ERV1 6466 6649 0 * 1169 216 61 7 chr3 226961861 226962112 -562466 + LTR10B LTR ERV1 312 547 0 231 260 14 68 chr3 226962112 226962158 -562420 - AluJo/F(R)AM SINE Alu -105 197 156 497 186 31 41 chr3 226962159 226962256 -562322 - AluJ/FLAM SINE Alu -216 96 1 6036 183 67 46 chr3 226962258 226965394 -559184 - L1 LINE L1 -3106 3222 3 3591 240 23 15 chr3 226965397 226966505 -558073 - L1MDa LINE L1 -2295 4245 3130 * 3896 231 40 68 chr3 226966501 226967968 -556610 - L1MDa LINE L1 -5145 1397 1 22 0 0 0 chr3 226968214 226968236 -556342 + AT_rich Low_complexity Low_complexity 1 22 0 669 219 93 9 chr3 226968622 226968748 -555830 - L1MEc LINE L1 -4614 1782 1668 1802 175 3 7 chr3 226968748 226969057 -555521 - AluJb SINE Alu -4 308 1 669 219 93 9 chr3 226969057 226969145 -555433 - L1MEc LINE L1 -4728 1668 1550 * 1734 295 51 31 chr3 226969138 226970125 -554453 - L1MEc LINE L1 -5368 1028 23 335 278 64 120 chr3 226970248 226970640 -553938 - L1ME4a LINE L1 -22 6099 5730 1149 74 0 0 chr3 226971269 226971404 -553174 + AluSq/x SINE Alu 1 135 -177 2106 117 7 0 chr3 226971404 226971694 -552884 + AluSx SINE Alu 1 292 -20 1429 210 131 4 chr3 226971763 226972275 -552303 - L1ME4a LINE L1 -1610 4536 3911 867 151 38 13 chr3 226972709 226972868 -551710 - FRAM SINE Alu -12 164 2 1844 157 20 0 chr3 226973386 226973692 -550886 - AluJb SINE Alu 0 312 1 384 275 99 44 chr3 226975101 226975283 -549295 + MIR SINE MIR 12 203 -59 883 191 86 79 chr3 226975334 226975637 -548941 - LTR37B LTR ERV1 0 468 164 1169 152 177 17 chr3 226975639 226975876 -548702 - AluJo SINE Alu -10 302 28 830 230 83 15 chr3 226975922 226976126 -548452 - MER20 DNA MER1_type -1 218 1 2069 101 0 17 chr3 226977608 226977904 -546674 - AluSx SINE Alu -1 311 21 245 29 0 29 chr3 226979537 226979572 -545006 + (CCA)n Simple_repeat Simple_repeat 3 36 0 585 180 82 0 chr3 226980512 226980634 -543944 + FLAM_A SINE Alu 2 133 0 322 295 74 47 chr3 226982343 226982492 -542086 - MER5A DNA MER1_type -2 187 35 1050 98 0 81 chr3 226983917 226984090 -540488 + AluSq SINE Alu 143 301 -12 895 209 17 0 chr3 226984119 226984291 -540287 + MSTD LTR MaLR 222 396 0 4400 110 61 3 chr3 226984501 226984744 -539834 + L1MA4 LINE L1 5532 5759 -541 279 0 0 0 chr3 226984744 226984775 -539803 + (CA)n Simple_repeat Simple_repeat 2 32 0 4400 110 61 3 chr3 226984775 226985249 -539329 + L1MA4 LINE L1 5759 6291 -9 239 328 84 0 chr3 226986484 226986603 -537975 + HAL1b LINE L1 1135 1263 -85 995 150 0 43 chr3 226986605 226986792 -537786 - FRAM SINE Alu 0 176 1 2063 108 13 3 chr3 226986801 226987106 -537472 - AluSc SINE Alu -1 308 1 287 282 0 0 chr3 226987184 226987262 -537316 - MER5B DNA MER1_type -100 78 1 850 177 40 121 chr3 226987286 226987535 -537043 - MER8 DNA MER2_type -1 238 10 272 327 26 0 chr3 226987903 226988016 -536562 + HsTC2 DNA Tc2 8 123 -1775 * 283 207 17 0 chr3 226988011 226988069 -536509 + HsTC2 DNA Tc2 1228 1286 -612 391 291 92 33 chr3 226988505 226988776 -535802 - L1ME4a LINE L1 -288 5833 5547 394 259 25 37 chr3 226989240 226989402 -535176 + MER104 DNA Tc2 18 177 -3 1503 184 39 11 chr3 226989589 226989871 -534707 - AluJb SINE Alu -22 290 1 322 245 200 73 chr3 226990140 226990385 -534193 - L1ME4a LINE L1 -1979 4167 3892 1169 254 7 0 chr3 226990705 226990985 -533593 - L1PB4 LINE L1 0 6156 5875 4680 180 5 55 chr3 226990989 226991467 -533111 - L1 LINE L1 -1460 4686 4185 2309 62 0 3 chr3 226991467 226991759 -532819 - AluY SINE Alu -20 291 1 4680 180 5 55 chr3 226991759 226992383 -532195 - L1 LINE L1 -1961 4185 3640 1905 114 111 3 chr3 226993266 226993591 -530987 - MER46B DNA MER2_type 0 236 2 650 186 157 0 chr3 226993805 226993945 -530633 - L1MB7 LINE L1 -30 6154 5993 2824 199 81 15 chr3 226993947 226994352 -530226 - L1MB7 LINE L1 -547 5637 5260 2070 126 3 0 chr3 226994352 226994653 -529925 - AluSg SINE Alu -8 302 1 2824 199 81 15 chr3 226994653 226994709 -529869 - L1MB7 LINE L1 -924 5260 5209 221 0 35 0 chr3 226994709 226994738 -529840 + (TTTTG)n Simple_repeat Simple_repeat 1 30 0 2824 199 81 15 chr3 226994738 226995277 -529301 - L1MB7 LINE L1 -975 5209 4581 1297 253 85 41 chr3 226995284 226995826 -528752 + L1MC5 LINE L1 6962 7527 -434 194 177 0 32 chr3 226995894 226995956 -528622 + (CATA)n Simple_repeat Simple_repeat 3 62 0 28 0 0 0 chr3 226995984 226996012 -528566 + AT_rich Low_complexity Low_complexity 1 28 0 249 284 106 7 chr3 226996152 226996293 -528285 - L1MC/D LINE L1 -2001 5807 5653 222 37 0 0 chr3 226996661 226996688 -527890 + (T)n Simple_repeat Simple_repeat 1 27 0 529 167 0 0 chr3 226996766 226996850 -527728 - L1MC/D LINE L1 -476 5645 5562 2848 153 19 19 chr3 226996966 226997507 -527071 - L1PA16 LINE L1 -5 6161 5621 412 261 85 37 chr3 226999425 226999613 -524965 - L2 LINE L2 -1 3312 3116 3523 150 92 11 chr3 226999967 227000633 -523945 - L1MC1 LINE L1 -1 6332 5613 215 93 23 0 chr3 227000741 227000784 -523794 + (TTTTTA)n Simple_repeat Simple_repeat 4 47 0 413 256 54 23 chr3 227001425 227001554 -523024 - MER94 DNA DNA -1 133 1 557 239 22 0 chr3 227001760 227001898 -522680 - L2 LINE L2 -1 3312 3172 1611 276 156 8 chr3 227001981 227002615 -521963 - L2 LINE L2 -675 2639 1912 394 259 91 82 chr3 227002648 227002868 -521710 - L2 LINE L2 -1608 1706 1485 200 276 69 0 chr3 227003273 227003331 -521247 - L2 LINE L2 0 3272 3211 1851 75 0 8 chr3 227007652 227007892 -516686 + AluY SINE Alu 46 283 -28 24 0 0 0 chr3 227009034 227009058 -515520 + AT_rich Low_complexity Low_complexity 1 24 0 1873 163 32 15 chr3 227010700 227011038 -513540 - MER2 DNA MER2_type 0 344 1 2165 102 0 22 chr3 227011312 227011627 -512951 - AluSx SINE Alu -2 310 3 1596 150 25 150 chr3 227012887 227013327 -511251 - MLT1B LTR MaLR 0 390 6 2107 89 13 3 chr3 227013715 227014018 -510560 - AluSp SINE Alu -7 306 1 419 130 113 9 chr3 227014784 227014899 -509679 - Looper DNA T2_type -57 1501 1375 1232 231 26 58 chr3 227014910 227015287 -509291 - L1ME2 LINE L1 -9 6155 5791 2885 205 110 5 chr3 227015287 227016023 -508555 - Looper DNA T2_type -177 1381 569 2659 196 65 2 chr3 227016026 227016546 -508032 + MER68 LTR ERV1 1 553 -9 290 139 0 139 chr3 227016556 227016642 -507936 - Looper DNA T2_type -989 569 496 555 195 16 60 chr3 227016668 227016853 -507725 - Looper DNA T2_type -1375 183 7 21 0 0 0 chr3 227016975 227016996 -507582 + AT_rich Low_complexity Low_complexity 1 21 0 565 281 95 31 chr3 227017288 227017708 -506870 - L1ME2 LINE L1 -960 5186 4740 580 288 95 33 chr3 227017780 227018137 -506441 - L1MC/D LINE L1 -806 5553 5260 433 321 98 50 chr3 227018224 227018282 -506296 - L1MC/D LINE L1 -978 5168 5114 2004 62 81 0 chr3 227018282 227018554 -506024 - AluY SINE Alu -17 294 1 433 321 98 50 chr3 227018554 227019257 -505321 - L1MC/D LINE L1 -1032 5114 4370 387 297 14 7 chr3 227019281 227019301 -505277 - L1MA10 LINE L1 0 6334 6315 1842 228 118 44 chr3 227019301 227020052 -504526 - L1ME2 LINE L1 -12 6152 5346 1798 191 29 14 chr3 227020052 227020402 -504176 + MLT1C LTR MaLR 1 355 -112 531 287 85 9 chr3 227020407 227020630 -503948 - L1MC/D LINE L1 -1889 4257 4018 4644 99 63 6 chr3 227020632 227021341 -503237 - L1PA14 LINE L1 0 6161 5412 256 170 0 0 chr3 227021341 227021388 -503190 - L1P LINE L1 -2271 3875 3829 614 132 18 26 chr3 227021488 227021602 -502976 - L1P LINE L1 -2485 3661 3549 * 2252 198 61 186 chr3 227021596 227022672 -501906 - L1MC/D LINE L1 -2116 4030 3038 1082 199 84 15 chr3 227022672 227022934 -501644 - MER77 LTR ERV1 -22 583 304 2252 198 61 186 chr3 227022934 227023649 -500929 - L1MC/D LINE L1 -3108 3038 2235 1430 294 28 26 chr3 227024139 227024717 -499861 - L1MC4a LINE L1 -1906 5902 5324 417 286 149 70 chr3 227024983 227025552 -499026 - L1MC4a LINE L1 -1197 4949 4336 464 234 53 41 chr3 227025791 227025962 -498616 - MER58A DNA MER1_type -22 202 30 33 0 0 0 chr3 227026084 227026117 -498461 + AT_rich Low_complexity Low_complexity 1 33 0 1915 137 0 3 chr3 227026349 227026634 -497944 + AluJb SINE Alu 14 297 -15 935 212 91 59 chr3 227026812 227027234 -497344 + MLT1D LTR MaLR 21 497 -8 409 301 149 37 chr3 227027234 227027590 -496988 - L1MC4a LINE L1 -2062 4084 3689 1065 203 172 14 chr3 227028058 227028354 -496224 + MER2 DNA MER2_type 2 344 -1 1669 174 82 34 chr3 227029310 227029461 -495117 + MER89 LTR ERV1 1 143 -416 2550 36 0 7 chr3 227029461 227029763 -494815 - AluY SINE Alu -11 300 1 1669 174 82 34 chr3 227029763 227030049 -494529 + MER89 LTR ERV1 143 559 0 185 245 0 0 chr3 227030123 227030172 -494406 - L2 LINE L2 -2 3311 3263 22 0 0 0 chr3 227030407 227030429 -494149 + AT_rich Low_complexity Low_complexity 1 22 0 1736 120 85 11 chr3 227031663 227031946 -492632 - AluSx SINE Alu -8 304 1 818 94 0 0 chr3 227031950 227032056 -492522 - AluSq/x SINE Alu -205 107 2 331 103 52 0 chr3 227032358 227032416 -492162 + AluSp/q SINE Alu 235 295 -8 236 403 74 13 chr3 227032525 227032674 -491904 - L2 LINE L2 -65 3207 3050 26 30 0 0 chr3 227033059 227033092 -491486 + AT_rich Low_complexity Low_complexity 1 33 0 1194 193 66 50 chr3 227033196 227033405 -491173 - L1MA9 LINE L1 -1 6311 6092 2168 131 0 0 chr3 227033405 227033703 -490875 - AluSg SINE Alu -12 298 1 1194 193 66 50 chr3 227033703 227033855 -490723 - L1MA9 LINE L1 -220 6092 5944 * 3214 189 63 136 chr3 227033842 227034792 -489786 - L1MA9 LINE L1 -1028 5118 4379 1289 111 0 5 chr3 227034792 227034981 -489597 - L1PA15 LINE L1 -17 6148 5961 3214 189 63 136 chr3 227034981 227035969 -488609 - L1MA9 LINE L1 -1767 4379 3321 240 243 110 17 chr3 227036453 227036626 -487952 - L1ME4a LINE L1 -56 6065 5877 210 267 33 89 chr3 227036852 227036942 -487636 + MIR SINE MIR 33 117 -91 30 45 0 0 chr3 227037102 227037146 -487432 + AT_rich Low_complexity Low_complexity 1 44 0 2025 127 7 13 chr3 227037159 227037459 -487119 - AluSx SINE Alu -14 298 1 1137 141 12 12 chr3 227037648 227037818 -486760 - AluSx SINE Alu -142 170 1 479 326 125 58 chr3 227037818 227037941 -486637 - HAL1 LINE L1 -1626 881 768 1965 113 32 3 chr3 227037941 227038225 -486353 - AluSx SINE Alu -20 292 1 479 326 125 58 chr3 227038225 227038269 -486309 - HAL1 LINE L1 -1739 768 728 3517 174 28 30 chr3 227038269 227039043 -485535 - L1MB8 LINE L1 0 6178 5406 479 326 125 58 chr3 227039043 227039353 -485225 - HAL1 LINE L1 -1779 728 371 2358 102 3 0 chr3 227039358 227039663 -484915 - AluSx SINE Alu -6 306 1 242 213 16 0 chr3 227041231 227041292 -483286 + CT-rich Low_complexity Low_complexity 1 62 0 210 330 58 55 chr3 227041346 227041548 -483030 + MIR3 SINE MIR 2 196 -61 377 303 211 49 chr3 227041909 227042421 -482157 - L3 LINE CR1 -23 1554 960 603 33 33 11 chr3 227042830 227042920 -481658 + (TAGA)n Simple_repeat Simple_repeat 3 94 0 2326 86 3 3 chr3 227043067 227043371 -481207 + AluSc SINE Alu 1 304 -5 304 172 16 47 chr3 227043403 227043467 -481111 + MLT1F LTR MaLR 1 62 -480 1116 186 47 165 chr3 227043504 227043767 -480811 + MLT1A1 LTR MaLR 1 197 -177 1764 159 10 7 chr3 227043767 227044075 -480503 - AluSg1 SINE Alu 0 309 1 1116 186 47 165 chr3 227044075 227044235 -480343 + MLT1A1 LTR MaLR 197 374 0 * 1769 193 14 63 chr3 227044235 227044670 -479908 + MLT1F LTR MaLR 128 540 -2 182 298 170 0 chr3 227044988 227045082 -479496 + L2 LINE L2 3147 3256 -16 407 244 35 26 chr3 227045436 227045551 -479027 + MIR SINE MIR 19 134 -74 268 246 181 6 chr3 227045735 227045826 -478752 + MIR SINE MIR 20 122 -86 264 59 0 0 chr3 227046108 227046142 -478436 + (TGAA)n Simple_repeat Simple_repeat 3 36 0 205 185 0 56 chr3 227046358 227046412 -478166 + C-rich Low_complexity Low_complexity 3 53 0 222 266 18 28 chr3 227047021 227047130 -477448 + (CGGG)n Simple_repeat Simple_repeat 2 109 0 329 224 89 151 chr3 227047156 227047606 -476972 - L1M2 LINE L1 -5715 1134 657 23 0 0 0 chr3 227048418 227048441 -476137 + AT_rich Low_complexity Low_complexity 1 23 0 288 286 24 12 chr3 227049150 227049234 -475344 - MIR3 SINE MIR -3 205 121 197 306 153 27 chr3 227049284 227049395 -475183 + MIR3 SINE MIR 30 154 -54 214 186 0 0 chr3 227050152 227050195 -474383 + (TAGA)n Simple_repeat Simple_repeat 2 44 0 2388 81 0 37 chr3 227050389 227050712 -473866 - AluY SINE Alu 0 311 1 852 215 63 58 chr3 227050856 227050921 -473657 + MER58A DNA MER1_type 1 64 -2356 1789 133 75 11 chr3 227050921 227051200 -473378 - AluSx SINE Alu -15 297 1 852 215 63 58 chr3 227051200 227051357 -473221 + MER58A DNA MER1_type 64 224 0 585 319 42 9 chr3 227051474 227051687 -472891 + MIR SINE MIR 3 222 -40 180 111 0 0 chr3 227051737 227051764 -472814 + (CCA)n Simple_repeat Simple_repeat 1 27 0 282 258 213 8 chr3 227051858 227052102 -472476 - LTR50 LTR ERVL -10 785 492 439 204 108 0 chr3 227052460 227052553 -472025 - L2 LINE L2 -1 3312 3210 1404 190 72 0 chr3 227052656 227052935 -471643 - Tigger3(Golem) DNA MER2_type -2730 299 1 376 196 206 9 chr3 227053061 227053168 -471410 - L2 LINE L2 -2017 1297 1170 5382 129 33 5 chr3 227054108 227055266 -469312 + L1PA13 LINE L1 4976 6162 -1 391 333 41 6 chr3 227055533 227055704 -468874 + L2 LINE L2 2475 2651 -663 240 203 68 0 chr3 227055704 227055778 -468800 - LTR67 LTR ERVL 0 557 479 917 135 10 72 chr3 227057142 227057335 -467243 + L1MA10 LINE L1 6147 6327 -7 2872 206 113 60 chr3 227057373 227058114 -466464 - L1MC4 LINE L1 -461 7581 6766 2167 114 0 7 chr3 227058114 227058412 -466166 - AluSq SINE Alu -17 296 1 2872 206 113 60 chr3 227058412 227058727 -465851 - L1MC4 LINE L1 -1276 6766 6469 246 305 6 36 chr3 227059078 227059245 -465333 - L1M4 LINE L1 -1071 5075 4914 772 122 43 0 chr3 227059479 227059618 -464960 - L1MB4 LINE L1 0 6180 6036 186 43 0 0 chr3 227060075 227060098 -464480 + (TTTC)n Simple_repeat Simple_repeat 2 24 0 1789 125 0 74 chr3 227060103 227060400 -464178 - AluSx SINE Alu -37 275 1 415 170 47 164 chr3 227060555 227060623 -463955 - L1ME LINE L1 -458 5663 5589 2052 115 0 24 chr3 227060623 227060910 -463668 - AluSg SINE Alu -30 280 1 415 170 47 164 chr3 227060910 227061012 -463566 - L1ME LINE L1 -532 5589 5513 2499 190 46 30 chr3 227061080 227061183 -463395 - L1MB4 LINE L1 -258 5922 5822 2182 99 0 55 chr3 227061183 227061495 -463083 + AluSg1 SINE Alu 1 295 -14 2499 190 46 30 chr3 227061495 227062400 -462178 - L1MB4 LINE L1 -358 5822 4897 342 135 162 0 chr3 227063868 227063942 -460636 + L1MC3 LINE L1 7700 7785 0 23 54 0 0 chr3 227064431 227064468 -460110 + AT_rich Low_complexity Low_complexity 1 37 0 25 31 0 0 chr3 227064526 227064558 -460020 + AT_rich Low_complexity Low_complexity 1 32 0 418 293 25 32 chr3 227064856 227065013 -459565 + MIR SINE MIR 9 164 -98 252 232 0 141 chr3 227065870 227065969 -458609 + MIR SINE MIR 60 144 -118 2357 92 0 35 chr3 227066362 227066679 -457899 - AluSp SINE Alu -7 306 1 1329 168 67 4 chr3 227066680 227066985 -457593 - L1M3 LINE L1 -620 5799 5475 3068 215 23 33 chr3 227066998 227068023 -456555 - L1M3 LINE L1 -1028 5354 4206 * 10024 158 82 52 chr3 227068022 227069053 -455525 - L1M3 LINE L1 -3441 2941 1943 1672 136 0 66 chr3 227069053 227069374 -455204 - AluJb SINE Alu 0 301 1 10024 158 82 52 chr3 227069374 227070330 -454248 - L1M3 LINE L1 -4439 1943 1018 2421 71 0 0 chr3 227070330 227070627 -453951 - AluY SINE Alu -14 297 1 10024 158 82 52 chr3 227070627 227070687 -453891 - L1M3 LINE L1 -5364 1018 961 2206 115 6 16 chr3 227070687 227071000 -453578 - AluSg SINE Alu 0 310 1 10024 158 82 52 chr3 227071000 227071795 -452783 - L1M3 LINE L1 -5421 961 5 189 0 0 0 chr3 227072234 227072255 -452323 + (T)n Simple_repeat Simple_repeat 1 21 0 26 0 0 0 chr3 227072503 227072529 -452049 + GC_rich Low_complexity Low_complexity 1 26 0 198 0 0 0 chr3 227072582 227072604 -451974 + (A)n Simple_repeat Simple_repeat 1 22 0 725 153 0 8 chr3 227073050 227073174 -451404 + FLAM_A SINE Alu 1 123 -10 499 235 73 39 chr3 227073464 227073698 -450880 + L1ME1 LINE L1 5924 6165 -1 * 1095 228 141 26 chr3 227073681 227074075 -450503 + L1MC4 LINE L1 7481 7947 -95 240 35 0 0 chr3 227074075 227074104 -450474 + (CA)n Simple_repeat Simple_repeat 2 30 0 1095 228 141 26 chr3 227074104 227074213 -450365 + L1MC4 LINE L1 7947 8042 0 2007 85 48 20 chr3 227074260 227074555 -450023 - AluY SINE Alu -8 303 1 314 62 0 0 chr3 227074581 227074629 -449949 + Alu SINE Alu 254 301 0 185 323 68 45 chr3 227074817 227074950 -449628 + MIR SINE MIR 65 200 -62 681 167 0 0 chr3 227075187 227075289 -449289 - AluS SINE Alu -211 102 1 560 205 48 33 chr3 227075388 227075598 -448980 - L1MC5 LINE L1 -26 7935 7723 31 0 0 0 chr3 227076096 227076127 -448451 + AT_rich Low_complexity Low_complexity 1 31 0 1480 175 14 3 chr3 227077724 227078010 -446568 + L1MB7 LINE L1 5887 6175 -9 231 302 70 16 chr3 227078036 227078165 -446413 + L1MC/D LINE L1 5405 5540 -2268 1252 200 71 0 chr3 227078236 227078531 -446047 - L1M4 LINE L1 -1007 5139 4824 1020 211 86 43 chr3 227078527 227078617 -445961 - L1M4 LINE L1 -1655 4491 4406 * 1778 149 6 38 chr3 227078617 227078933 -445645 - AluJb SINE Alu -6 306 1 1020 211 86 43 chr3 227078933 227079169 -445409 - L1M4 LINE L1 -1740 4406 4151 2579 76 20 0 chr3 227079225 227079579 -444999 - L1PB1 LINE L1 0 6151 5791 1816 134 7 11 chr3 227080318 227080587 -443991 + AluSx SINE Alu 29 296 -16 244 148 49 5 chr3 227080701 227080774 -443804 - L1ME3A LINE L1 -182 5980 5902 267 271 86 29 chr3 227080820 227080960 -443618 - L1ME3A LINE L1 -345 5817 5670 370 281 156 7 chr3 227080977 227081247 -443331 - L1ME3A LINE L1 -597 5567 5258 260 304 85 22 chr3 227081394 227081618 -442960 - L1ME3A LINE L1 -2711 3435 3198 231 269 13 26 chr3 227081678 227081756 -442822 + (CATATA)n Simple_repeat Simple_repeat 2 78 0 405 225 98 49 chr3 227081896 227082203 -442375 - L1ME3A LINE L1 -2982 3164 2843 1791 167 13 0 chr3 227082213 227082518 -442060 - AluJo SINE Alu -3 309 1 2017 71 52 4 chr3 227083400 227083669 -440909 - AluY SINE Alu -29 282 1 332 96 0 0 chr3 227083691 227083743 -440835 + Alu SINE Alu 249 300 0 189 323 68 45 chr3 227083931 227084064 -440514 + MIR SINE MIR 65 200 -62 658 167 0 0 chr3 227084301 227084403 -440175 - AluS SINE Alu -211 102 1 632 205 48 33 chr3 227084502 227084712 -439866 - L1MC5 LINE L1 -26 7935 7723 31 0 0 0 chr3 227085210 227085241 -439337 + AT_rich Low_complexity Low_complexity 1 31 0 1480 175 14 3 chr3 227086838 227087124 -437454 + L1MB7 LINE L1 5887 6175 -9 231 302 70 16 chr3 227087150 227087279 -437299 + L1MC/D LINE L1 5405 5540 -2268 1210 207 71 0 chr3 227087350 227087645 -436933 - L1M4 LINE L1 -1007 5139 4824 1044 207 85 46 chr3 227087641 227087732 -436846 - L1M4 LINE L1 -1655 4491 4405 * 1769 149 6 38 chr3 227087732 227088047 -436531 - AluJb SINE Alu -7 305 1 1044 207 85 46 chr3 227088047 227088283 -436295 - L1M4 LINE L1 -1741 4405 4151 6067 148 21 4 chr3 227088339 227088692 -435886 - L1PB1 LINE L1 0 6151 5806 351 0 0 0 chr3 227088692 227088731 -435847 + (TG)n Simple_repeat Simple_repeat 1 39 0 6067 148 21 4 chr3 227088731 227090121 -434457 - L1PB1 LINE L1 -345 5806 4376 1022 127 0 140 chr3 227090123 227090370 -434208 - AluSg/x SINE Alu 0 312 114 225 0 0 0 chr3 227091082 227091107 -433471 + (TG)n Simple_repeat Simple_repeat 1 25 0 1136 157 32 16 chr3 227091137 227091322 -433256 + AluJo SINE Alu 89 276 -36 1240 283 141 28 chr3 227091587 227092120 -432458 - MLT1G1 LTR MaLR -2 593 1 2445 53 0 13 chr3 227092608 227092911 -431667 + AluY SINE Alu 2 300 -11 1300 209 69 0 chr3 227093621 227093927 -430651 - L1MC3 LINE L1 0 7785 7459 1895 108 60 0 chr3 227094171 227094439 -430139 + AluSx SINE Alu 16 299 -13 763 230 101 14 chr3 227097243 227097452 -427126 + MIR SINE MIR 36 262 0 24 53 0 0 chr3 227097513 227097551 -427027 + AT_rich Low_complexity Low_complexity 1 38 0 48 0 0 0 chr3 227097713 227097761 -426817 + AT_rich Low_complexity Low_complexity 1 48 0 1658 181 0 7 chr3 227098172 227098475 -426103 - AluJo SINE Alu -11 301 1 26 64 0 0 chr3 227098528 227098575 -426003 + AT_rich Low_complexity Low_complexity 1 47 0 1820 181 0 13 chr3 227100048 227100347 -424231 + AluJb SINE Alu 1 295 -17 431 318 10 10 chr3 227100381 227100573 -424005 - L1ME3A LINE L1 -219 5951 5760 1700 131 100 31 chr3 227100580 227100931 -423647 - THE1C LTR MaLR 0 375 1 742 109 60 38 chr3 227101760 227101944 -422634 + AluYa5 SINE Alu 124 311 0 229 136 34 0 chr3 227101974 227102033 -422545 - L1M4 LINE L1 -1717 4429 4369 3092 227 48 12 chr3 227102037 227102878 -421700 - L1M4 LINE L1 -1845 4301 3431 195 162 0 54 chr3 227103048 227103122 -421456 + C-rich Low_complexity Low_complexity 2 71 0 211 317 109 10 chr3 227103402 227103503 -421075 - L3 LINE CR1 -27 1550 1440 1903 136 0 14 chr3 227103827 227104113 -420465 - AluSx SINE Alu -30 282 1 276 273 67 3 chr3 227104505 227104635 -419943 - L1M2 LINE L1 -595 5575 5484 663 236 62 26 chr3 227104932 227105228 -419350 + L2 LINE L2 1827 2178 -1136 241 263 184 0 chr3 227105283 227105359 -419219 + L2 LINE L2 2434 2523 -791 551 285 40 64 chr3 227105488 227105843 -418735 - MLT1G3 LTR MaLR -196 346 1 1028 171 65 34 chr3 227106330 227106593 -417985 - Tigger6 DNA MER2_type 0 1597 1327 629 257 130 10 chr3 227106605 227106912 -417666 + L1MC/D LINE L1 3083 3426 -2720 * 664 215 82 56 chr3 227106908 227106999 -417579 + L1MC/D LINE L1 4101 4188 -1958 2834 6 0 0 chr3 227106999 227107310 -417268 + AluYa5 SINE Alu 1 311 0 664 215 82 56 chr3 227107310 227107451 -417127 + L1MC/D LINE L1 4188 4339 -1807 312 287 28 19 chr3 227107578 227107686 -416892 + L1MC/D LINE L1 5482 5590 -531 263 191 0 0 chr3 227107744 227107791 -416787 + L1MC/D LINE L1 5765 5811 -1997 14372 127 22 28 chr3 227108733 227111165 -413413 + Tigger1 DNA MER2_type 1 2418 0 234 241 37 0 chr3 227111166 227111220 -413358 - MER5A DNA MER1_type -133 56 1 351 0 0 0 chr3 227111394 227111433 -413145 + (TA)n Simple_repeat Simple_repeat 1 39 0 2426 87 0 0 chr3 227111438 227111750 -412828 - AluSx SINE Alu 0 312 1 2158 80 35 3 chr3 227112411 227112697 -411881 - AluSp SINE Alu -18 295 1 2038 325 108 20 chr3 227112967 227114087 -410491 + L2 LINE L2 542 1759 -1555 929 194 6 6 chr3 227114150 227114315 -410263 + FAM SINE Alu 1 165 -10 2075 110 10 0 chr3 227114319 227114611 -409967 + AluY SINE Alu 3 297 -14 1119 216 104 11 chr3 227114649 227114917 -409661 - AluJo SINE Alu -9 293 1 21 57 0 0 chr3 227114919 227114954 -409624 + AT_rich Low_complexity Low_complexity 1 35 0 2635 247 178 30 chr3 227115003 227116870 -407708 - L1ME LINE L1 -343 5819 3675 309 283 21 55 chr3 227116875 227117020 -407558 - L1ME LINE L1 -2570 3576 3437 189 0 0 0 chr3 227117046 227117067 -407511 + (T)n Simple_repeat Simple_repeat 1 21 0 256 335 0 0 chr3 227118160 227118237 -406341 + Charlie8 DNA MER1_type 1349 1417 -1000 2111 109 3 26 chr3 227118599 227118911 -405667 - AluSx SINE Alu -5 307 3 650 167 0 0 chr3 227119110 227119212 -405366 + AluJb SINE Alu 3 104 -208 639 239 0 0 chr3 227119892 227120034 -404544 - FRAM SINE Alu -35 141 1 434 103 15 0 chr3 227120958 227121026 -403552 - L1MB7 LINE L1 -9 6175 6107 3813 188 41 8 chr3 227121047 227121201 -403377 - L1MB4 LINE L1 -6 6174 6021 1808 254 58 36 chr3 227121201 227121894 -402684 - L1ME2 LINE L1 -148 5999 5292 385 327 78 7 chr3 227122282 227122435 -402143 - MLT1L LTR MaLR -369 246 83 377 316 72 7 chr3 227123426 227123578 -401000 - L1ME2 LINE L1 -3736 2393 2232 243 289 58 57 chr3 227123796 227123880 -400698 - MER20B DNA MER1_type -4 215 133 2324 65 10 16 chr3 227123880 227124190 -400388 - AluY SINE Alu -3 308 1 243 289 58 57 chr3 227124190 227124315 -400263 - MER20B DNA MER1_type -86 133 12 484 249 82 72 chr3 227124357 227124844 -399734 - L1ME2 LINE L1 -4734 1576 1044 869 204 0 18 chr3 227124866 227125033 -399545 - FAM SINE Alu 0 49 1 226 112 0 90 chr3 227125042 227125131 -399447 + (CTTAT)n Simple_repeat Simple_repeat 2 82 0 1059 241 112 20 chr3 227125166 227125705 -398873 + L1M4 LINE L1 2161 5098 -1048 1355 227 92 1 chr3 227125719 227125996 -398582 + L1ME2 LINE L1 4871 5121 -1041 1606 177 13 42 chr3 227125996 227126307 -398271 + AluJo SINE Alu 2 303 -9 1355 227 92 1 chr3 227126307 227126541 -398037 + L1ME2 LINE L1 5121 5440 -722 370 169 91 0 chr3 227126569 227126646 -397932 + L1ME1 LINE L1 6034 6117 -49 1751 279 107 2 chr3 227126684 227127328 -397250 + L1ME2 LINE L1 5426 6137 -27 355 256 26 0 chr3 227127584 227127662 -396916 - MER81 DNA DNA -7 107 28 4464 233 61 35 chr3 227127825 227129517 -395061 + L1MB7 LINE L1 532 2448 -4196 1158 200 20 66 chr3 227129517 227129822 -394756 - AluJo SINE Alu -10 292 2 4464 233 61 35 chr3 227129822 227130285 -394293 + L1MB7 LINE L1 2448 2897 -3747 3266 223 50 13 chr3 227130346 227131218 -393360 + L1MB7 LINE L1 3895 4799 -1845 1595 182 43 93 chr3 227131227 227131310 -393268 + L1MB7 LINE L1 6204 6290 -392 2215 97 0 28 chr3 227131310 227131630 -392948 - AluY SINE Alu 0 311 1 1595 182 43 93 chr3 227131630 227132030 -392548 + L1MB7 LINE L1 6290 6663 -19 211 317 109 10 chr3 227132058 227132159 -392419 - L3 LINE CR1 -27 1550 1440 1907 140 0 14 chr3 227132483 227132769 -391809 - AluSx SINE Alu -30 282 1 2140 122 3 3 chr3 227134181 227134493 -390085 - AluSp SINE Alu -1 312 1 1946 83 87 0 chr3 227136018 227136294 -388284 - AluSq SINE Alu -13 300 1 1273 126 176 42 chr3 227136837 227137099 -387479 + AluJo SINE Alu 2 298 -4 2445 47 0 13 chr3 227137204 227137505 -387073 + AluY SINE Alu 1 297 -14 387 331 43 31 chr3 227137532 227137695 -386883 - MIR SINE MIR -28 234 70 235 215 43 65 chr3 227137718 227137811 -386767 - MER34 LTR ERV1 -2 540 450 480 193 17 8 chr3 227138822 227139009 -385569 - MER8 DNA MER2_type 0 239 8 1413 191 7 18 chr3 227139560 227139837 -384741 + AluJb SINE Alu 33 306 -6 1648 182 11 0 chr3 227140061 227140330 -384248 + AluSx SINE Alu 1 272 -40 538 166 80 68 chr3 227140791 227140954 -383624 - MER63 DNA MER1_type -22 1038 874 2418 76 0 16 chr3 227141013 227141327 -383251 + AluSg SINE Alu 1 309 -1 3261 229 227 13 chr3 227142553 227143746 -380832 + L1MC4 LINE L1 6460 7907 -135 1541 251 90 20 chr3 227144558 227145105 -379473 - MLT1H1 LTR MaLR 0 555 2 347 168 107 92 chr3 227145308 227145439 -379139 + L1MC4a LINE L1 5807 5939 -1869 2131 103 31 0 chr3 227145443 227145734 -378844 + AluSc SINE Alu 1 300 -9 200 308 0 33 chr3 227145749 227145840 -378738 + (TATATG)n Simple_repeat Simple_repeat 2 89 0 1581 185 13 20 chr3 227146088 227146391 -378187 + AluJo SINE Alu 1 301 -11 236 310 26 26 chr3 227146571 227146687 -377891 + L1MC4a LINE L1 6476 6591 -1217 30 27 0 0 chr3 227147238 227147275 -377303 + AT_rich Low_complexity Low_complexity 1 37 0 24 53 0 0 chr3 227147316 227147354 -377224 + AT_rich Low_complexity Low_complexity 1 38 0 21 36 0 0 chr3 227147688 227147716 -376862 + AT_rich Low_complexity Low_complexity 1 28 0 22 35 0 0 chr3 227148146 227148175 -376403 + AT_rich Low_complexity Low_complexity 1 29 0 1292 274 108 51 chr3 227149311 227149336 -375242 - HAL1 LINE L1 -2 2505 2483 1949 155 3 0 chr3 227149336 227149645 -374933 - AluSx SINE Alu -2 310 1 1292 274 108 51 chr3 227149645 227150458 -374120 - HAL1 LINE L1 -24 2483 1619 648 198 0 0 chr3 227151368 227151484 -373094 - FLAM_A SINE Alu -19 123 8 1852 164 119 5 chr3 227153380 227153739 -370839 + L1MA9 LINE L1 5835 6244 -68 182 37 37 0 chr3 227153739 227153766 -370812 + (TA)n Simple_repeat Simple_repeat 1 28 0 1852 164 119 5 chr3 227153766 227153802 -370776 + L1MA9 LINE L1 6244 6275 -37 1909 135 0 3 chr3 227153803 227154085 -370493 + AluSx SINE Alu 1 281 -31 233 160 20 0 chr3 227154087 227154137 -370441 + (TA)n Simple_repeat Simple_repeat 2 52 0 2323 93 0 0 chr3 227154281 227154583 -369995 + AluSg SINE Alu 1 302 -8 186 43 0 0 chr3 227154881 227154904 -369674 + (TAGG)n Simple_repeat Simple_repeat 1 23 0 1408 160 20 75 chr3 227154909 227155215 -369363 - AluJo SINE Alu -23 289 1 22 56 0 0 chr3 227155657 227155693 -368885 + AT_rich Low_complexity Low_complexity 1 36 0 2201 94 0 24 chr3 227156499 227156796 -367782 - AluSg SINE Alu -15 295 6 370 217 33 69 chr3 227157266 227157405 -367173 - L1MC4 LINE L1 0 8042 7880 2155 111 0 16 chr3 227158129 227158445 -366133 + AluSx SINE Alu 1 311 -1 1186 152 0 0 chr3 227158445 227158623 -365955 + AluJb SINE Alu 134 311 -1 1836 160 0 23 chr3 227160554 227160861 -363717 - AluJo SINE Alu -12 300 1 210 118 0 0 chr3 227161626 227161660 -362918 + (TA)n Simple_repeat Simple_repeat 2 35 0 22 56 0 0 chr3 227163333 227163369 -361209 + AT_rich Low_complexity Low_complexity 1 36 0 25 31 0 0 chr3 227163423 227163455 -361123 + AT_rich Low_complexity Low_complexity 1 32 0 207 0 0 0 chr3 227163550 227163573 -361005 + (T)n Simple_repeat Simple_repeat 1 23 0 258 267 0 17 chr3 227163709 227163769 -360809 + L2 LINE L2 3213 3271 -1 2079 93 0 14 chr3 227165894 227166174 -358404 + AluSx SINE Alu 1 276 -36 231 61 0 0 chr3 227166177 227166210 -358368 + (T)n Simple_repeat Simple_repeat 1 33 0 879 245 167 28 chr3 227166532 227166855 -357723 + L1ME4a LINE L1 5539 5906 -215 1404 244 37 13 chr3 227166872 227167253 -357325 - L1ME LINE L1 -440 5730 5341 209 333 0 0 chr3 227167296 227167353 -357225 - MER5A DNA MER1_type -124 65 9 282 240 7 82 chr3 227167521 227167667 -356911 - L1MC5 LINE L1 -44 7917 7783 309 277 94 49 chr3 227167773 227167997 -356581 + L1ME4a LINE L1 5636 5869 -252 1818 154 10 16 chr3 227168019 227168325 -356253 + AluSx SINE Alu 1 304 -8 1421 167 9 76 chr3 227168335 227168665 -355913 + AluJo SINE Alu 1 308 -4 27 0 0 0 chr3 227168691 227168718 -355860 + AT_rich Low_complexity Low_complexity 1 27 0 38 0 0 0 chr3 227169852 227169890 -354688 + AT_rich Low_complexity Low_complexity 1 38 0 180 0 0 0 chr3 227169903 227169923 -354655 + (TATATG)n Simple_repeat Simple_repeat 4 23 0 2420 79 3 0 chr3 227171034 227171339 -353239 + AluSp SINE Alu 1 306 -7 21 0 0 0 chr3 227171572 227171593 -352985 + AT_rich Low_complexity Low_complexity 1 21 0 35 41 0 0 chr3 227171651 227171700 -352878 + AT_rich Low_complexity Low_complexity 1 49 0 907 201 0 12 chr3 227173920 227174089 -350489 + FRAM SINE Alu 1 167 -9 4305 212 103 60 chr3 227174164 227174398 -350180 + L1MC4 LINE L1 5177 5400 -2642 2207 104 3 0 chr3 227174398 227174695 -349883 + AluSq SINE Alu 1 298 -15 1766 124 35 0 chr3 227174704 227174962 -349616 + AluSx SINE Alu 34 300 -12 4305 212 103 60 chr3 227174962 227176462 -348116 + L1MC4 LINE L1 5407 7104 -938 1959 148 83 3 chr3 227176462 227176801 -347777 + MER47A DNA MER2_type 1 366 0 4305 212 103 60 chr3 227176801 227177429 -347149 + L1MC4 LINE L1 7104 7704 -338 355 224 284 0 chr3 227177442 227177576 -347002 + L1MC4 LINE L1 7785 7956 -86 22 0 0 0 chr3 227177695 227177717 -346861 + AT_rich Low_complexity Low_complexity 1 22 0 1820 143 79 0 chr3 227177787 227178067 -346511 + AluSx SINE Alu 1 302 -10 782 135 0 38 chr3 227178457 227178590 -345988 + FLAM_C SINE Alu 1 128 -5 329 178 69 79 chr3 227179054 227179155 -345423 + MIR SINE MIR 93 192 -70 244 192 0 39 chr3 227179227 227179279 -345299 + MER3 DNA MER1_type 160 209 0 1287 257 132 49 chr3 227179453 227179666 -344912 + L1M4 LINE L1 2157 2351 -3795 2426 61 3 0 chr3 227179666 227179959 -344619 + AluY SINE Alu 1 294 -17 1287 257 132 49 chr3 227179959 227180611 -343967 + L1M4 LINE L1 2351 3130 -3016 1736 186 3 3 chr3 227180611 227180912 -343666 + AluJb SINE Alu 1 301 -11 1287 257 132 49 chr3 227180912 227181118 -343460 + L1M4 LINE L1 3130 3318 -2828 1529 239 119 58 chr3 227181159 227181510 -343068 + L1ME3A LINE L1 5319 5647 -523 1631 182 0 23 chr3 227181510 227181812 -342766 + AluJo SINE Alu 2 296 -16 1529 239 119 58 chr3 227181812 227182236 -342342 + L1ME3A LINE L1 5647 6167 -3 559 310 123 11 chr3 227182254 227182628 -341950 + L1M4 LINE L1 3437 3852 -2294 7324 150 76 96 chr3 227182640 227183642 -340936 + L1M4 LINE L1 29 1049 -5335 1747 184 3 16 chr3 227183642 227183778 -340800 + AluJb SINE Alu 1 137 -175 2248 109 3 0 chr3 227183778 227184081 -340497 + AluSq SINE Alu 1 304 -9 1747 184 3 16 chr3 227184081 227184260 -340318 + AluJb SINE Alu 137 312 0 7324 150 76 96 chr3 227184260 227184777 -339801 + L1M4 LINE L1 1049 1575 -4809 1651 167 6 42 chr3 227184777 227185089 -339489 - AluJb SINE Alu -10 302 2 2207 102 3 7 chr3 227185099 227185404 -339174 - AluSx SINE Alu -8 304 1 7324 150 76 96 chr3 227185404 227185653 -338925 + L1M4 LINE L1 1584 1774 -4610 265 227 125 0 chr3 227185652 227185740 -338838 + L1M4 LINE L1 4243 4341 -2041 * 539 196 107 62 chr3 227185719 227185944 -338634 - L1MC5 LINE L1 -86 7875 7641 486 223 83 52 chr3 227186384 227186577 -338001 - L1ME3A LINE L1 -10 6160 5962 1090 230 145 34 chr3 227186581 227186968 -337610 - L1ME1 LINE L1 -15 6151 5722 1991 129 10 10 chr3 227187906 227188215 -336363 - AluSc SINE Alu 0 309 1 1319 266 115 53 chr3 227188222 227189028 -335550 - HAL1 LINE L1 -33 2474 1619 667 198 0 0 chr3 227189938 227190054 -334524 - FLAM_A SINE Alu -19 123 8 1797 168 91 13 chr3 227191948 227192322 -332256 + L1MA9 LINE L1 5835 6237 -75 1095 141 0 6 chr3 227192451 227192621 -331957 + AluSg/x SINE Alu 144 312 0 921 203 117 78 chr3 227192785 227193307 -331271 + L1MC5 LINE L1 7334 7875 -86 259 217 43 0 chr3 227193305 227193374 -331204 - L1M4 LINE L1 -2068 4314 4243 * 1260 173 36 40 chr3 227193373 227193621 -330957 - L1M4 LINE L1 -4610 1774 1528 2237 96 0 0 chr3 227193621 227193938 -330640 + AluSx SINE Alu 1 317 0 180 0 0 0 chr3 227195775 227195795 -328783 + (TA)n Simple_repeat Simple_repeat 2 21 0 1663 176 7 7 chr3 227195795 227196084 -328494 - AluJb SINE Alu -23 289 1 1411 334 50 17 chr3 227196168 227197035 -327543 - L2 LINE L2 -70 3243 2342 1451 112 4 52 chr3 227197055 227197305 -327273 - AluSg/x SINE Alu -6 306 69 861 244 99 73 chr3 227197512 227197958 -326620 + MER52A LTR ERV1 275 1459 -138 433 291 32 19 chr3 227197972 227198130 -326448 + MER52A LTR ERV1 1596 1755 0 380 254 48 0 chr3 227198352 227198478 -326100 + L1MC4 LINE L1 6931 7062 -980 329 229 0 0 chr3 227198565 227198635 -325943 - MER94 DNA DNA -54 80 11 24 0 0 0 chr3 227199050 227199074 -325504 + AT_rich Low_complexity Low_complexity 1 24 0 317 236 142 0 chr3 227199622 227199728 -324850 - L2 LINE L2 -4 3309 3189 28 92 0 0 chr3 227199734 227199799 -324779 + AT_rich Low_complexity Low_complexity 1 65 0 21 0 0 0 chr3 227201710 227201731 -322847 + AT_rich Low_complexity Low_complexity 1 21 0 2329 58 0 4 chr3 227202723 227203001 -321577 - AluY SINE Alu -34 277 1 249 257 71 53 chr3 227203005 227203118 -321460 - L2 LINE L2 -540 2774 2660 29 28 0 0 chr3 227203685 227203721 -320857 + GC_rich Low_complexity Low_complexity 1 36 0 23 78 0 0 chr3 227204039 227204090 -320488 + AT_rich Low_complexity Low_complexity 1 51 0 240 59 0 0 chr3 227204140 227204174 -320404 + (TTTTG)n Simple_repeat Simple_repeat 2 35 0 24 32 0 0 chr3 227205479 227205510 -319068 + AT_rich Low_complexity Low_complexity 1 31 0 260 342 18 36 chr3 227205662 227205773 -318805 - MIR3 SINE MIR -49 159 51 200 157 135 112 chr3 227208133 227208222 -316356 - MIR SINE MIR -109 153 63 2229 98 11 0 chr3 227208588 227208903 -315675 + AluSp SINE Alu 1 318 0 257 340 58 19 chr3 227209033 227209189 -315389 - MIR3 SINE MIR -14 194 33 407 240 140 1 chr3 227209486 227209624 -314954 + MIR SINE MIR 17 175 -33 2300 85 7 0 chr3 227209823 227210118 -314460 + AluY SINE Alu 3 299 -12 486 223 83 52 chr3 227210670 227210863 -313715 - L1ME3A LINE L1 -10 6160 5962 1090 230 145 34 chr3 227210867 227211254 -313324 - L1ME1 LINE L1 -15 6151 5722 2414 75 13 0 chr3 227212189 227212495 -312083 - AluSg SINE Alu 0 310 1 268 317 19 19 chr3 227213014 227213118 -311460 + L2 LINE L2 2561 2664 -650 2086 89 43 0 chr3 227213778 227214060 -310518 + AluSq SINE Alu 1 294 -19 306 247 86 11 chr3 227214763 227214856 -309722 - L2 LINE L2 -13 3259 3160 189 0 0 0 chr3 227215187 227215208 -309370 + (A)n Simple_repeat Simple_repeat 1 21 0 238 254 0 17 chr3 227217578 227217637 -306941 - MER91 DNA MER1_type 0 196 139 228 282 97 32 chr3 227217729 227217853 -306725 - MIR3 SINE MIR -67 141 10 738 191 125 0 chr3 227218124 227218292 -306286 - MER5A DNA MER1_type 0 189 1 257 264 11 22 chr3 227218314 227218405 -306173 + CT-rich Low_complexity Low_complexity 2 91 0 236 206 15 29 chr3 227218410 227218478 -306100 + MIR SINE MIR 54 120 -88 25 65 0 0 chr3 227219069 227219115 -305463 + GC_rich Low_complexity Low_complexity 1 46 0 27 29 0 0 chr3 227219353 227219387 -305191 + GC_rich Low_complexity Low_complexity 1 34 0 2174 108 3 0 chr3 227221497 227221785 -302793 - AluSx SINE Alu -23 289 1 4705 148 30 24 chr3 227221785 227222409 -302169 - L1MC1 LINE L1 -9 6324 5692 2600 45 0 0 chr3 227222409 227222700 -301878 - AluY SINE Alu -20 291 1 4705 148 30 24 chr3 227222700 227222906 -301672 - L1MC1 LINE L1 -641 5692 5489 624 307 63 40 chr3 227222906 227223352 -301226 - L1M4 LINE L1 -1882 5683 5228 2079 120 40 0 chr3 227223381 227223680 -300898 + AluSx SINE Alu 1 311 -1 2387 103 0 6 chr3 227224260 227224571 -300007 - AluSx SINE Alu -3 309 1 5050 206 36 4 chr3 227224571 227225940 -298638 - L1M4 LINE L1 -5463 2102 16 255 152 0 0 chr3 227225981 227226027 -298551 + (TA)n Simple_repeat Simple_repeat 2 47 0 207 0 0 0 chr3 227226026 227226049 -298529 + (T)n Simple_repeat Simple_repeat 1 23 0 * 485 208 42 0 chr3 227226053 227226149 -298429 - AluJo SINE Alu -96 216 117 772 251 59 0 chr3 227226302 227226489 -298089 + MER58A DNA MER1_type 27 224 0 317 169 56 0 chr3 227226591 227226662 -297916 - L1MC/D LINE L1 -2370 5438 5364 1352 164 12 64 chr3 227226665 227226994 -297584 + AluJo SINE Alu 1 312 0 27 0 0 0 chr3 227227020 227227047 -297531 + AT_rich Low_complexity Low_complexity 1 27 0 38 0 0 0 chr3 227228181 227228219 -296359 + AT_rich Low_complexity Low_complexity 1 38 0 180 0 0 0 chr3 227228232 227228252 -296326 + (TATATG)n Simple_repeat Simple_repeat 4 23 0 871 201 0 12 chr3 227228642 227228811 -295767 - FRAM SINE Alu -9 167 1 35 41 0 0 chr3 227231031 227231080 -293498 + AT_rich Low_complexity Low_complexity 1 49 0 21 0 0 0 chr3 227231138 227231159 -293419 + AT_rich Low_complexity Low_complexity 1 21 0 2341 82 3 0 chr3 227231393 227231698 -292880 - AluSp SINE Alu -7 306 1 180 0 0 0 chr3 227232809 227232829 -291749 + (CATATA)n Simple_repeat Simple_repeat 4 23 0 38 0 0 0 chr3 227232842 227232880 -291698 + AT_rich Low_complexity Low_complexity 1 38 0 27 0 0 0 chr3 227234014 227234041 -290537 + AT_rich Low_complexity Low_complexity 1 27 0 1361 173 9 64 chr3 227234067 227234397 -290181 - AluJo SINE Alu 0 312 1 1744 154 10 16 chr3 227234407 227234713 -289865 - AluSx SINE Alu -8 304 1 404 280 102 47 chr3 227234723 227234959 -289619 - L1ME4a LINE L1 -237 5884 5636 269 232 26 80 chr3 227235065 227235216 -289362 + L1MC5 LINE L1 7783 7925 -36 218 316 0 0 chr3 227235379 227235436 -289142 + MER5A DNA MER1_type 9 65 -124 1407 244 37 13 chr3 227235479 227235860 -288718 + L1ME LINE L1 5341 5730 -440 854 251 161 22 chr3 227235877 227236200 -288378 - L1ME4a LINE L1 -215 5906 5539 323 281 184 11 chr3 227236339 227236524 -288054 - L1ME4a LINE L1 -744 5402 5186 213 65 0 0 chr3 227236524 227236555 -288023 + (A)n Simple_repeat Simple_repeat 1 31 0 2027 93 0 14 chr3 227236558 227236838 -287740 - AluSx SINE Alu -36 276 1 1687 158 30 0 chr3 227236840 227237138 -287440 - AluJo SINE Alu -5 307 1 2342 161 34 100 chr3 227237138 227237164 -287414 - L1M1 LINE L1 -517 5783 5757 2082 87 31 0 chr3 227237164 227237451 -287127 - AluSp SINE Alu -17 296 1 2342 161 34 100 chr3 227237451 227237584 -286994 - L1M1 LINE L1 -543 5757 5617 1814 158 13 0 chr3 227237584 227237887 -286691 - AluSx SINE Alu -5 307 1 2342 161 34 100 chr3 227237887 227237967 -286611 - L1M1 LINE L1 -683 5617 5533 2031 111 3 7 chr3 227237967 227238256 -286322 + AluSp SINE Alu 1 288 -25 2342 161 34 100 chr3 227238256 227238450 -286128 - L1M1 LINE L1 -767 5533 5328 1911 140 0 0 chr3 227238450 227238735 -285843 - AluSx SINE Alu -27 285 1 2342 161 34 100 chr3 227238735 227239285 -285293 - L1M1 LINE L1 -972 5328 4849 2140 186 70 113 chr3 227239483 227240026 -284552 - L1MD2 LINE L1 -2 8040 7475 1780 136 26 19 chr3 227240026 227240334 -284244 - AluJb SINE Alu -2 310 1 2140 186 70 113 chr3 227240334 227240539 -284039 - L1MD2 LINE L1 -567 7475 6231 1488 179 0 36 chr3 227241164 227241465 -283113 - AluJo SINE Alu -22 290 1 34 0 0 0 chr3 227243242 227243276 -281302 + AT_rich Low_complexity Low_complexity 1 34 0 26 0 0 0 chr3 227243337 227243363 -281215 + AT_rich Low_complexity Low_complexity 1 26 0 21 0 0 0 chr3 227243399 227243420 -281158 + AT_rich Low_complexity Low_complexity 1 21 0 249 300 7 18 chr3 227244549 227244638 -279940 - MIR SINE MIR -102 106 20 235 191 135 79 chr3 227244695 227244784 -279794 - MIR SINE MIR -106 156 63 2099 98 11 0 chr3 227245150 227245465 -279113 + AluSp SINE Alu 1 318 0 308 340 58 19 chr3 227245595 227245751 -278827 - MIR3 SINE MIR -14 194 33 455 240 140 1 chr3 227246048 227246186 -278392 + MIR SINE MIR 17 175 -33 2379 67 0 0 chr3 227246382 227246681 -277897 + AluY SINE Alu 1 299 -12 494 223 83 52 chr3 227247233 227247426 -277152 - L1ME3A LINE L1 -10 6160 5962 1107 230 145 34 chr3 227247430 227247817 -276761 - L1ME1 LINE L1 -15 6151 5722 2284 75 13 0 chr3 227248754 227249060 -275518 - AluSg SINE Alu 0 310 1 271 324 97 28 chr3 227249507 227249683 -274895 + L2 LINE L2 2477 2664 -650 1971 89 43 0 chr3 227250343 227250625 -273953 + AluSq SINE Alu 1 294 -19 338 241 74 37 chr3 227251313 227251421 -273157 - L2 LINE L2 -1 3271 3160 189 0 0 0 chr3 227251752 227251773 -272805 + (A)n Simple_repeat Simple_repeat 1 21 0 259 258 8 16 chr3 227255520 227255592 -268986 - MER91 DNA MER1_type 0 190 123 278 295 88 28 chr3 227255656 227255800 -268778 - MIR3 SINE MIR -67 141 5 753 191 125 0 chr3 227256066 227256234 -268344 - MER5A DNA MER1_type 0 189 1 262 206 15 29 chr3 227256352 227256420 -268158 + MIR SINE MIR 54 120 -88 25 65 0 0 chr3 227257011 227257057 -267521 + GC_rich Low_complexity Low_complexity 1 46 0 27 29 0 0 chr3 227257295 227257329 -267249 + GC_rich Low_complexity Low_complexity 1 34 0 202 272 206 0 chr3 227261265 227261357 -263221 - L2 LINE L2 -1 3271 3161 209 189 0 0 chr3 227261699 227261736 -262842 + (CGTG)n Simple_repeat Simple_repeat 3 39 0 190 291 91 0 chr3 227264846 227264901 -259677 - L3b LINE CR1 -37 1546 1487 961 169 0 6 chr3 227264903 227265081 -259497 + FRAM SINE Alu 1 170 -6 282 320 116 7 chr3 227265211 227265358 -259220 - MIR SINE MIR -78 184 22 239 267 55 27 chr3 227265582 227265703 -258875 + MIR SINE MIR 22 141 -67 2050 107 7 3 chr3 227265963 227266263 -258315 + AluSc SINE Alu 1 301 -8 1331 221 141 25 chr3 227266310 227266419 -258159 - L1MC4 LINE L1 0 8042 7947 240 35 0 0 chr3 227266419 227266448 -258130 + (TG)n Simple_repeat Simple_repeat 2 30 0 1331 221 141 25 chr3 227266448 227266826 -257752 - L1MC4 LINE L1 -95 7947 7498 702 240 69 26 chr3 227266824 227267057 -257521 - L1ME1 LINE L1 0 6166 5924 * 662 170 0 9 chr3 227267347 227267459 -257119 - FLAM_A SINE Alu -19 123 13 2083 116 0 0 chr3 227268183 227268477 -256101 + AluSg SINE Alu 1 294 -16 2274 74 0 16 chr3 227268477 227268786 -255792 + AluY SINE Alu 1 304 -7 2327 93 0 0 chr3 227268976 227269276 -255302 - AluSx SINE Alu -12 300 1 4144 132 72 5 chr3 227269717 227270452 -254126 + L1MA7 LINE L1 5506 6289 -2 1948 124 0 19 chr3 227270458 227270772 -253806 + AluSx SINE Alu 1 308 -4 1394 146 14 155 chr3 227270784 227270815 -253763 - AluJo SINE Alu -2 300 266 2133 90 3 0 chr3 227270815 227271103 -253475 + AluY SINE Alu 1 289 -22 1394 146 14 155 chr3 227271103 227271420 -253158 - AluJo SINE Alu -36 266 1 2631 172 36 0 chr3 227271436 227271937 -252641 - L1MB7 LINE L1 -9 6175 5657 2083 116 0 0 chr3 227274153 227274447 -250131 + AluSg SINE Alu 1 294 -16 2215 74 0 14 chr3 227274447 227274743 -249835 + AluY SINE Alu 1 292 -19 2486 44 0 0 chr3 227275008 227275302 -249276 - AluY SINE Alu -17 294 1 187 276 141 42 chr3 227276967 227277159 -247419 + L2 LINE L2 2481 2691 -623 195 300 146 9 chr3 227277223 227277333 -247245 - MIR SINE MIR -118 144 20 232 299 62 0 chr3 227277839 227277936 -246642 + MIR3 SINE MIR 61 163 -45 5523 162 78 13 chr3 227277965 227278208 -246370 - L1MA5A LINE L1 -2 6295 6069 2297 105 7 10 chr3 227278208 227278514 -246064 + AluSx SINE Alu 1 305 -7 5523 162 78 13 chr3 227278514 227279865 -244713 - L1MA5A LINE L1 -228 6069 4592 333 276 37 30 chr3 227280499 227280633 -243945 - MIR SINE MIR -57 205 71 328 236 28 0 chr3 227282389 227282461 -242117 - MER58 DNA MER1_type -1 2419 2346 * 353 153 0 69 chr3 227282458 227282530 -242048 - MER58 DNA MER1_type -105 110 44 248 247 0 27 chr3 227283662 227283735 -240843 + L3 LINE CR1 1425 1495 -82 285 302 44 25 chr3 227285563 227285722 -238856 + MER5A DNA MER1_type 23 184 -5 378 245 189 0 chr3 227285827 227285933 -238645 + MIR SINE MIR 117 242 -20 2644 224 91 68 chr3 227286476 227286658 -237920 + L2 LINE L2 1575 1751 -1563 2533 57 0 7 chr3 227286658 227286959 -237619 - AluY SINE Alu -12 299 1 2644 224 91 68 chr3 227286959 227287729 -236849 + L2 LINE L2 1751 2549 -765 224 238 12 38 chr3 227289464 227289544 -235034 + C-rich Low_complexity Low_complexity 3 80 0 27 0 0 0 chr3 227289695 227289722 -234856 + GC_rich Low_complexity Low_complexity 1 27 0 26 88 0 0 chr3 227289812 227289880 -234698 + GC_rich Low_complexity Low_complexity 1 68 0 297 354 56 6 chr3 227291868 227292029 -232549 + MIR SINE MIR 67 235 -27 184 240 40 20 chr3 227292264 227292314 -232264 + MIR SINE MIR 190 240 -22 698 287 25 58 chr3 227292614 227292673 -231905 + MER115 DNA AcHobo 1 60 -633 473 278 148 0 chr3 227292673 227292835 -231743 - MER5A DNA MER1_type 0 189 4 698 287 25 58 chr3 227292835 227292928 -231650 + MER115 DNA AcHobo 60 155 -538 2161 114 0 20 chr3 227292928 227293226 -231352 - AluSg SINE Alu -18 292 1 698 287 25 58 chr3 227293226 227293347 -231231 + MER115 DNA AcHobo 155 266 -427 813 205 6 0 chr3 227293515 227293671 -230907 + Zaphod DNA AcHobo 3873 4029 -2 1694 160 46 14 chr3 227294008 227294290 -230288 + AluJb SINE Alu 1 291 -21 268 329 158 0 chr3 227294329 227294475 -230103 + MIR3 SINE MIR 33 201 -7 262 204 20 0 chr3 227294642 227294691 -229887 - MER5A DNA MER1_type -14 175 126 766 125 17 8 chr3 227294694 227294814 -229764 + FLAM_A SINE Alu 1 121 -12 1350 158 54 58 chr3 227294824 227294937 -229641 + AluJo SINE Alu 1 113 -199 246 32 0 0 chr3 227294937 227294968 -229610 + (CA)n Simple_repeat Simple_repeat 2 32 0 1350 158 54 58 chr3 227294968 227295114 -229464 + AluJo SINE Alu 113 259 -53 261 211 18 0 chr3 227295114 227295171 -229407 - MER5A DNA MER1_type -131 58 1 231 265 12 12 chr3 227296751 227296834 -227744 - MLT1K LTR MaLR -422 166 84 966 190 0 2 chr3 227297399 227298022 -226556 + (TG)n Simple_repeat Simple_repeat 1 621 0 670 232 153 37 chr3 227298067 227298352 -226226 + L1MC1 LINE L1 6026 6343 -1 702 234 33 90 chr3 227299036 227299426 -225152 + HAL1b LINE L1 1201 1318 -30 2347 113 0 0 chr3 227299496 227299807 -224771 + AluSx SINE Alu 1 311 -1 215 290 65 71 chr3 227300474 227300643 -223935 - MIR3 SINE MIR -14 194 27 311 247 47 0 chr3 227300757 227300842 -223736 - HERV16 LTR ERVL -4907 89 1 454 294 55 13 chr3 227300842 227301236 -223342 - LTR16A LTR ERVL 0 450 16 474 274 121 47 chr3 227301354 227301498 -223080 - MIR SINE MIR -3 259 92 2075 91 111 15 chr3 227301498 227301840 -222738 + THE1C LTR MaLR 1 375 0 474 274 121 47 chr3 227301840 227301910 -222668 - MIR SINE MIR -170 92 29 284 291 60 37 chr3 227302624 227302758 -221820 + L2 LINE L2 3136 3272 0 1432 219 64 24 chr3 227302947 227303322 -221256 - MLT1B LTR MaLR 0 390 1 205 261 34 67 chr3 227303863 227303982 -220596 - MIR SINE MIR -53 209 95 1641 152 46 15 chr3 227304935 227305264 -219314 - L1MB3 LINE L1 -30 6153 5815 230 69 0 0 chr3 227305349 227305378 -219200 - LTR6A LTR ERV1 -462 102 74 21 0 0 0 chr3 227306288 227306309 -218269 + AT_rich Low_complexity Low_complexity 1 21 0 27 49 0 0 chr3 227306338 227306379 -218199 + AT_rich Low_complexity Low_complexity 1 41 0 2295 217 53 5 chr3 227306387 227306987 -217591 - L1ME4a LINE L1 -170 5951 5319 1945 97 0 8 chr3 227307868 227308135 -216443 - AluSq SINE Alu -48 265 1 252 284 65 25 chr3 227308173 227308325 -216253 - L1MEc LINE L1 -3532 2683 2520 180 77 0 0 chr3 227308325 227308351 -216227 + (TG)n Simple_repeat Simple_repeat 1 26 0 252 284 65 25 chr3 227308351 227308399 -216179 - L1MEc LINE L1 -3695 2520 2475 371 349 73 33 chr3 227308418 227308693 -215885 - L1MEc LINE L1 -3944 2452 2167 1041 237 68 8 chr3 227308740 227309006 -215572 + L1MD3 LINE L1 7706 7987 -8 685 334 26 9 chr3 227309260 227309679 -214899 + L1MEc LINE L1 1253 1678 -4718 264 287 35 0 chr3 227309797 227309884 -214694 - L1ME LINE L1 -528 5593 5504 1847 165 0 14 chr3 227309931 227310222 -214356 + AluJb SINE Alu 1 287 -25 23 0 0 0 chr3 227310222 227310245 -214333 + AT_rich Low_complexity Low_complexity 1 23 0 2052 120 3 7 chr3 227310578 227310897 -213681 - AluSx SINE Alu 0 318 1 2179 147 94 122 chr3 227311047 227311587 -212991 - L1MA9 LINE L1 0 6312 5758 2472 76 0 16 chr3 227311587 227311903 -212675 - AluY SINE Alu 0 311 1 1842 158 30 0 chr3 227311905 227312203 -212375 - AluJo SINE Alu -5 307 1 2179 147 94 122 chr3 227312203 227312229 -212349 - L1MA9 LINE L1 -555 5757 5732 2236 87 31 0 chr3 227312229 227312516 -212062 - AluSp SINE Alu -17 296 1 2179 147 94 122 chr3 227312516 227312627 -211951 - L1MA9 LINE L1 -580 5732 5650 1928 165 13 0 chr3 227312649 227312952 -211626 - AluSx SINE Alu -5 307 1 343 43 21 0 chr3 227312957 227313004 -211574 + L1MA5A LINE L1 6051 6098 -199 1075 240 137 26 chr3 227313535 227313922 -210656 + L1ME1 LINE L1 5722 6151 -15 474 223 83 52 chr3 227313926 227314119 -210459 + L1ME3A LINE L1 5962 6160 -10 2419 73 0 7 chr3 227314671 227314972 -209606 - AluY SINE Alu -12 299 1 2198 118 0 16 chr3 227316415 227316719 -207859 + AluSx SINE Alu 1 299 -13 2455 84 0 0 chr3 227316858 227317157 -207421 - AluSg SINE Alu -11 299 1 217 261 171 0 chr3 227317225 227317313 -207265 - L2 LINE L2 -14 3299 3197 200 130 0 43 chr3 227317741 227317787 -206791 + L2 LINE L2 3214 3257 -15 5807 88 17 8 chr3 227318269 227319431 -205147 + L1PA6 LINE L1 4961 6137 -17 2110 142 0 3 chr3 227319766 227320076 -204502 - AluSx SINE Alu -3 309 1 390 270 170 72 chr3 227320077 227320443 -204135 + L2 LINE L2 2737 3159 -154 678 190 0 0 chr3 227320556 227320677 -203901 - FLAM_A SINE Alu -12 121 1 1812 133 0 0 chr3 227321190 227321439 -203139 + AluSx SINE Alu 49 297 -15 959 194 22 0 chr3 227321942 227322122 -202456 + MER5A DNA MER1_type 3 186 -3 1403 169 7 62 chr3 227322151 227322424 -202154 + AluJo SINE Alu 2 259 -53 24 32 0 0 chr3 227322459 227322490 -202088 + AT_rich Low_complexity Low_complexity 1 31 0 1053 166 16 5 chr3 227322519 227322706 -201872 - MER5A DNA MER1_type 0 189 1 2241 121 3 0 chr3 227323237 227323542 -201036 + AluSx SINE Alu 1 306 -6 2397 93 0 7 chr3 227323694 227323996 -200582 + AluSq SINE Alu 1 300 -13 1579 62 0 5 chr3 227325485 227325677 -198901 - AluY SINE Alu -12 299 109 908 99 7 0 chr3 227325677 227325828 -198750 - HSATII Satellite Satellite -18 152 1 899 73 0 0 chr3 227325840 227325949 -198629 - AluY SINE Alu -202 109 1 1271 193 35 31 chr3 227325980 227326234 -198344 - AluJo SINE Alu -23 289 35 2307 110 0 19 chr3 227326375 227326692 -197886 - AluSq SINE Alu -2 311 1 318 207 54 72 chr3 227327516 227327627 -196951 + L1ME4a LINE L1 5995 6103 -18 433 298 35 81 chr3 227327768 227327835 -196743 - MIR SINE MIR -70 192 124 2029 118 29 0 chr3 227327835 227328107 -196471 + AluSx SINE Alu 1 280 -32 246 62 0 0 chr3 227328107 227328139 -196439 + (CAAT)n Simple_repeat Simple_repeat 4 35 0 433 298 35 81 chr3 227328139 227328268 -196310 - MIR SINE MIR -136 126 4 1948 175 0 0 chr3 227328760 227329069 -195509 + AluJb SINE Alu 1 309 -3 2469 64 20 3 chr3 227329096 227329394 -195184 + AluY SINE Alu 1 303 -8 22 0 0 0 chr3 227330025 227330047 -194531 + AT_rich Low_complexity Low_complexity 1 22 0 2262 114 3 0 chr3 227330159 227330465 -194113 + AluSp SINE Alu 1 307 -6 781 68 39 0 chr3 227330698 227330801 -193777 - L1PA8 LINE L1 -13 6159 6053 341 179 39 9 chr3 227330802 227330898 -193680 - Alu SINE Alu -3 299 244 4312 99 12 8 chr3 227330898 227331543 -193035 - L1PA8 LINE L1 -125 6047 5400 1183 94 9 4 chr3 227331549 227331764 -192814 - AluSq SINE Alu -10 303 1 251 75 25 0 chr3 227331764 227331804 -192774 - L1PA8 LINE L1 -756 5399 5359 1117 106 7 0 chr3 227331805 227331947 -192631 - AluSg/x SINE Alu -14 296 154 15729 106 17 14 chr3 227331947 227332732 -191846 - L1PA8 LINE L1 -779 5367 4586 2267 119 0 0 chr3 227332732 227333042 -191536 + AluY SINE Alu 1 310 -1 15729 106 17 14 chr3 227333042 227334527 -190051 - L1PA8 LINE L1 -1560 4586 3087 2352 113 3 0 chr3 227334527 227334836 -189742 - AluSp SINE Alu -3 310 1 15729 106 17 14 chr3 227334836 227335076 -189502 - L1PA8 LINE L1 -3059 3087 2849 1629 173 10 51 chr3 227335078 227335390 -189188 - AluJo SINE Alu -13 299 1 1611 90 40 5 chr3 227335512 227335734 -188844 - MER30 DNA MER1_type 0 230 1 2120 81 71 3 chr3 227335903 227336186 -188392 - AluY SINE Alu -9 302 1 595 316 147 60 chr3 227336277 227337060 -187518 + L2 LINE L2 2387 3233 -39 3277 187 110 38 chr3 227337060 227337144 -187434 + MER21B LTR ERV1 1 78 -785 2117 119 7 7 chr3 227337144 227337430 -187148 - AluSx SINE Alu -14 298 13 3277 187 110 38 chr3 227337430 227338136 -186442 + MER21B LTR ERV1 78 848 -15 208 138 0 0 chr3 227338144 227338173 -186405 + L2 LINE L2 3229 3257 -15 2116 114 7 13 chr3 227338176 227338475 -186103 + AluSq SINE Alu 2 298 -15 250 256 0 24 chr3 227339047 227339129 -185449 + MER116 DNA Mariner 1 80 0 533 242 55 33 chr3 227339348 227339530 -185048 - MIR SINE MIR -60 202 17 2180 117 0 0 chr3 227339672 227339971 -184607 + AluJb SINE Alu 1 299 -13 1966 130 74 0 chr3 227340033 227340317 -184261 + AluSx SINE Alu 3 307 -5 389 266 47 31 chr3 227340861 227340989 -183589 - MIR3 SINE MIR -64 144 15 2555 72 0 3 chr3 227341445 227341752 -182826 + AluSx SINE Alu 1 306 -6 329 309 109 27 chr3 227342134 227342390 -182188 + L2 LINE L2 2161 2437 -877 261 294 20 20 chr3 227342419 227342521 -182057 + MER5B DNA MER1_type 1 102 -76 843 182 0 0 chr3 227342709 227342841 -181737 + FLAM_C SINE Alu 1 132 -1 182 289 103 65 chr3 227342869 227343132 -181446 + L2 LINE L2 2612 2884 -430 717 198 140 97 chr3 227343301 227343395 -181183 + L1ME1 LINE L1 4853 4942 -1204 2290 89 0 0 chr3 227343395 227343676 -180902 + AluSx SINE Alu 1 281 -31 11433 27 25 33 chr3 227343676 227345064 -179514 - SVA Other Other -1 1385 8 717 198 140 97 chr3 227345064 227345080 -179498 + L1ME1 LINE L1 4942 4956 -1190 315 0 0 0 chr3 227345080 227345115 -179463 + (TAAA)n Simple_repeat Simple_repeat 1 35 0 717 198 140 97 chr3 227345115 227345340 -179238 + L1ME1 LINE L1 4956 5208 -938 1885 159 0 44 chr3 227345340 227345660 -178918 + AluJo SINE Alu 5 310 -2 690 224 37 75 chr3 227345677 227345745 -178833 + L1ME1 LINE L1 5522 5591 -575 2346 98 3 0 chr3 227345745 227346042 -178536 + AluSg SINE Alu 2 299 -11 2197 91 0 3 chr3 227346044 227346329 -178249 + AluY SINE Alu 3 286 -25 201 39 0 0 chr3 227346329 227346355 -178223 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 690 224 37 75 chr3 227346355 227346523 -178055 + L1ME1 LINE L1 5590 5753 -413 798 257 48 70 chr3 227346581 227346687 -177891 + L1ME1 LINE L1 5737 5844 -320 4008 205 57 12 chr3 227346687 227347547 -177031 - MER54A LTR ERVL -2 899 1 798 257 48 70 chr3 227347547 227347822 -176756 + L1ME1 LINE L1 5844 6108 -56 1040 118 31 0 chr3 227347822 227347983 -176595 + FRAM SINE Alu 1 165 -11 21 0 0 0 chr3 227348221 227348242 -176336 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 227348709 227348733 -175845 + GC_rich Low_complexity Low_complexity 1 24 0 29 78 0 0 chr3 227349366 227349430 -175148 + GC_rich Low_complexity Low_complexity 1 64 0 425 266 169 34 chr3 227351909 227352086 -172492 - MIR SINE MIR -56 206 6 181 261 35 63 chr3 227352209 227352351 -172227 - L2 LINE L2 -467 2847 2710 1819 167 61 19 chr3 227352770 227353130 -171448 + THE1C LTR MaLR 1 375 0 273 291 154 8 chr3 227353281 227353398 -171180 + MIR SINE MIR 22 155 -107 811 158 0 0 chr3 227353405 227353525 -171053 + AluSg/x SINE Alu 176 295 -15 2322 95 3 0 chr3 227353610 227353906 -170672 + AluSg SINE Alu 1 297 -13 2429 75 3 28 chr3 227353906 227354224 -170354 + AluY SINE Alu 1 310 -1 488 179 10 12 chr3 227354228 227354328 -170250 + L1 LINE L1 4488 4583 -1563 2010 145 13 0 chr3 227354328 227354632 -169946 - AluSx SINE Alu -4 308 1 488 179 10 12 chr3 227354632 227354656 -169922 + L1 LINE L1 4583 4606 -1540 569 134 41 0 chr3 227354656 227354753 -169825 - LTR12 LTR ERV1 -133 581 481 310 260 8 32 chr3 227354754 227354877 -169701 - LTR30 LTR ERV1 -79 643 524 2752 10 0 3 chr3 227354925 227355221 -169357 - AluYa5 SINE Alu -16 295 1 21 0 0 0 chr3 227355288 227355309 -169269 + AT_rich Low_complexity Low_complexity 1 21 0 446 220 0 44 chr3 227355326 227355417 -169161 - FRAM SINE Alu -78 98 12 674 231 8 0 chr3 227355446 227355567 -169011 + FLAM_A SINE Alu 1 122 -11 2377 83 7 0 chr3 227355587 227355889 -168689 - AluY SINE Alu -7 304 1 301 179 115 39 chr3 227355910 227355988 -168590 - L1ME3 LINE L1 0 6162 6079 2399 79 3 7 chr3 227356162 227356466 -168112 + AluSx SINE Alu 1 303 -9 335 346 209 0 chr3 227356466 227356677 -167901 + HAL1 LINE L1 207 461 -2046 1098 173 61 0 chr3 227356683 227356880 -167698 + MER3 DNA MER1_type 1 209 0 259 191 0 0 chr3 227356880 227356927 -167651 - MER3 DNA MER1_type 0 209 163 546 256 82 74 chr3 227356940 227357209 -167369 + HAL1 LINE L1 468 738 -1769 452 169 0 14 chr3 227357488 227357559 -167019 + AluJ/FLAM SINE Alu 2 71 -241 305 156 130 39 chr3 227357610 227357665 -166913 + L1ME3 LINE L1 6079 6144 -18 2197 119 17 0 chr3 227357665 227357960 -166618 - AluSx SINE Alu -12 300 1 305 156 130 39 chr3 227357960 227357981 -166597 + L1ME3 LINE L1 6144 6162 0 2200 113 3 7 chr3 227358348 227358650 -165928 - AluSg SINE Alu -9 301 1 2059 145 7 10 chr3 227358721 227359031 -165547 + AluSx SINE Alu 1 309 -3 344 167 108 29 chr3 227359033 227359135 -165443 - MER119 DNA MER1_type -197 386 277 789 134 0 9 chr3 227359180 227359292 -165286 + FLAM_C SINE Alu 5 115 -18 1931 121 3 34 chr3 227359302 227359624 -164954 - AluSx SINE Alu 0 312 1 942 264 34 11 chr3 227359680 227359949 -164629 - MER119 DNA MER1_type -307 276 2 323 348 43 14 chr3 227359956 227360097 -164481 - L1ME3 LINE L1 -117 6004 5860 1005 298 138 19 chr3 227360098 227360635 -163943 + HAL1 LINE L1 11 611 -1896 235 276 67 71 chr3 227360636 227360731 -163847 - HAL1 LINE L1 -85 2422 2328 2109 133 7 3 chr3 227360731 227361032 -163546 - AluSx SINE Alu -10 302 1 235 276 67 71 chr3 227361032 227361161 -163417 - HAL1 LINE L1 -179 2328 2199 293 263 129 14 chr3 227361205 227361350 -163228 - MER20B DNA MER1_type -17 202 40 1215 248 71 30 chr3 227361397 227361901 -162677 - HAL1 LINE L1 -353 2154 1630 917 215 54 76 chr3 227361987 227362076 -162502 - L1MC4a LINE L1 0 7808 7719 2236 132 0 0 chr3 227362076 227362386 -162192 - AluSx SINE Alu -2 310 1 763 184 0 16 chr3 227362395 227362520 -162058 - FLAM_A SINE Alu -10 123 1 917 215 54 76 chr3 227362520 227362774 -161804 - L1MC4a LINE L1 -97 7711 7463 2356 104 3 0 chr3 227362775 227363083 -161495 - AluSq SINE Alu -4 309 1 1788 188 7 3 chr3 227363084 227363388 -161190 - AluJo SINE Alu -7 305 1 1091 237 163 48 chr3 227363388 227364039 -160539 - L1ME3 LINE L1 -748 5398 4823 2155 118 7 13 chr3 227364039 227364343 -160235 - AluSx SINE Alu -10 302 1 1373 71 0 15 chr3 227364350 227364546 -160032 - L1MB3 LINE L1 0 6183 5991 1091 237 163 48 chr3 227364546 227364643 -159935 - L1ME3 LINE L1 -1328 4818 4734 2287 128 0 0 chr3 227364643 227364948 -159630 - AluSx SINE Alu -7 305 1 1091 237 163 48 chr3 227364948 227365387 -159191 - L1ME3 LINE L1 -1412 4734 358 583 270 198 13 chr3 227365420 227365809 -158769 - HAL1 LINE L1 -1775 732 272 2288 111 0 10 chr3 227365837 227366135 -158443 - AluSq SINE Alu -18 295 1 228 288 30 0 chr3 227366738 227366804 -157774 + HAL1 LINE L1 12 79 -2428 1085 84 0 7 chr3 227366808 227366951 -157627 - AluSp/q SINE Alu -6 307 166 438 169 0 0 chr3 227366969 227367034 -157544 - AluJ/FLAM SINE Alu -245 67 3 498 291 299 20 chr3 227368974 227369330 -155248 - L1MC/D LINE L1 -2005 5803 5548 2284 105 3 0 chr3 227369330 227369625 -154953 - AluSx SINE Alu -16 296 1 498 291 299 20 chr3 227369625 227369673 -154905 - L1MC/D LINE L1 -2260 5548 5286 306 253 96 48 chr3 227369687 227369770 -154808 - L2 LINE L2 -37 3276 3190 2201 104 7 19 chr3 227369910 227370218 -154360 - AluSx SINE Alu -8 304 1 327 274 75 62 chr3 227370329 227370446 -154132 + L1MC4a LINE L1 5754 5875 -1933 2272 112 7 3 chr3 227370446 227370751 -153827 + AluSx SINE Alu 1 306 -6 327 274 75 62 chr3 227370751 227370779 -153799 + L1MC4a LINE L1 5875 5901 -1907 2349 99 0 0 chr3 227370980 227371283 -153295 + AluY SINE Alu 1 303 -8 22 56 0 0 chr3 227371717 227371753 -152825 + AT_rich Low_complexity Low_complexity 1 36 0 21 0 0 0 chr3 227372075 227372096 -152482 + AT_rich Low_complexity Low_complexity 1 21 0 1860 167 0 3 chr3 227372236 227372518 -152060 + AluSx SINE Alu 14 294 -18 2213 127 0 7 chr3 227372518 227372826 -151752 + AluSg SINE Alu 1 306 -4 281 240 20 50 chr3 227373238 227373338 -151240 - L1ME LINE L1 -5659 411 315 2157 94 7 0 chr3 227373484 227373759 -150819 + AluSq SINE Alu 1 277 -36 219 36 0 0 chr3 227373759 227373787 -150791 + (TAAAA)n Simple_repeat Simple_repeat 2 29 0 244 242 15 0 chr3 227373825 227373891 -150687 - MIR SINE MIR 0 262 196 2951 117 73 20 chr3 227373891 227374386 -150192 - LTR9 LTR ERV1 -91 521 1 1280 129 0 10 chr3 227374386 227374588 -149990 - HUERS-P3 LTR ERV1 0 8919 8720 2316 131 0 0 chr3 227374667 227374979 -149599 - AluSx SINE Alu 0 312 1 877 160 15 53 chr3 227375079 227375188 -149390 - HUERS-P3b LTR ERV1 -2430 2585 2485 2052 130 0 27 chr3 227375188 227375480 -149098 + AluSx SINE Alu 1 284 -28 181 0 0 0 chr3 227375480 227375500 -149078 + (CAAAA)n Simple_repeat Simple_repeat 2 25 0 877 160 15 53 chr3 227375500 227375595 -148983 - HUERS-P3b LTR ERV1 -2530 2485 2388 * 2577 150 102 14 chr3 227375593 227375716 -148862 - HUERS-P3b LTR ERV1 -473 6945 6834 2279 100 0 0 chr3 227375716 227376007 -148571 + AluSx SINE Alu 1 291 -21 2577 150 102 14 chr3 227376007 227376377 -148201 - HUERS-P3b LTR ERV1 -584 6834 6426 1907 123 15 0 chr3 227376377 227376646 -147932 + AluSx SINE Alu 3 275 -37 607 188 7 51 chr3 227376811 227376949 -147629 - FLAM_C SINE Alu 0 133 2 2399 81 0 3 chr3 227376973 227377268 -147310 - AluY SINE Alu -17 294 1 1556 123 198 8 chr3 227377779 227378032 -146546 + AluSg1 SINE Alu 1 301 -8 2051 92 39 59 chr3 227378032 227378338 -146240 + AluSp SINE Alu 1 300 -13 5050 201 37 9 chr3 227378339 227378517 -146061 - L1M1 LINE L1 -5284 2281 2109 2223 114 7 7 chr3 227378517 227378823 -145755 - AluSq SINE Alu -7 306 1 5050 201 37 9 chr3 227378823 227380193 -144385 - L1M1 LINE L1 -5456 2109 16 255 152 0 0 chr3 227380234 227380280 -144298 + (TA)n Simple_repeat Simple_repeat 2 47 0 207 0 0 0 chr3 227380279 227380302 -144276 + (T)n Simple_repeat Simple_repeat 1 23 0 * 1233 131 0 11 chr3 227380310 227380486 -144092 - AluSg SINE Alu -99 211 38 891 163 41 0 chr3 227380937 227381084 -143494 - FRAM SINE Alu -24 152 1 783 68 39 0 chr3 227381134 227381237 -143341 - L1PA8 LINE L1 -13 6159 6053 362 179 39 9 chr3 227381238 227381334 -143244 - Alu SINE Alu -3 297 242 4697 94 12 2 chr3 227381334 227381975 -142603 - L1PA8 LINE L1 -125 6047 5400 2196 123 3 0 chr3 227381981 227382281 -142297 - AluSq SINE Alu -10 303 3 425 92 92 13 chr3 227382284 227382360 -142218 - L1PA15-16 LINE L1 -5183 1666 1585 2134 127 0 3 chr3 227382362 227382653 -141925 + AluSx SINE Alu 6 295 -17 1420 191 3 58 chr3 227382664 227382812 -141766 + AluJo SINE Alu 1 156 -156 2209 108 0 3 chr3 227382812 227383108 -141470 + AluSg SINE Alu 1 295 -15 1420 191 3 58 chr3 227383108 227383289 -141289 + AluJo SINE Alu 156 312 0 279 79 0 0 chr3 227383298 227383336 -141242 + (GGAA)n Simple_repeat Simple_repeat 3 40 0 2262 57 7 11 chr3 227383424 227383733 -140845 + AluY SINE Alu 1 308 0 1520 152 108 4 chr3 227383737 227384006 -140572 + AluJb SINE Alu 9 305 -7 642 209 6 57 chr3 227384019 227384196 -140382 - MER3 DNA MER1_type -87 122 2 276 312 0 40 chr3 227384209 227384334 -140244 - HAL1b LINE L1 -741 607 488 38 0 0 0 chr3 227384336 227384374 -140204 + AT_rich Low_complexity Low_complexity 1 38 0 1808 46 9 5 chr3 227384531 227384750 -139828 - AluY SINE Alu -16 295 76 1435 206 41 11 chr3 227384751 227384808 -139770 - L1M4 LINE L1 -882 5264 5210 2309 87 10 16 chr3 227384808 227385120 -139458 - AluSx SINE Alu -1 311 2 1435 206 41 11 chr3 227385120 227385427 -139151 - L1M4 LINE L1 -936 5210 4889 2464 93 0 0 chr3 227385431 227385741 -138837 - AluSx SINE Alu -2 310 1 272 143 41 0 chr3 227385741 227385790 -138788 - L1M4 LINE L1 -1349 4797 4747 * 362 177 0 52 chr3 227385787 227385883 -138695 - L1M4 LINE L1 -1826 4320 4230 1545 173 32 25 chr3 227385899 227386062 -138516 - AluJb SINE Alu -26 286 119 183 42 0 0 chr3 227386062 227386086 -138492 + (TTCA)n Simple_repeat Simple_repeat 1 24 0 1545 173 32 25 chr3 227386086 227386206 -138372 - AluJb SINE Alu -193 119 1 356 294 0 0 chr3 227386208 227386317 -138261 - L1M4 LINE L1 -1906 4240 4132 271 135 0 0 chr3 227386317 227386354 -138224 + AluSq SINE Alu 1 37 -265 2138 88 59 0 chr3 227386354 227386626 -137952 + AluSq SINE Alu 13 300 -13 265 354 0 0 chr3 227386637 227386733 -137845 + L1M4 LINE L1 3711 3806 -2340 1630 183 13 17 chr3 227386804 227387105 -137473 + AluJo SINE Alu 1 300 -12 2340 98 0 0 chr3 227387110 227387406 -137172 + AluSq SINE Alu 1 296 -17 363 176 0 15 chr3 227387587 227387655 -136923 - AluJ/FRAM SINE Alu -4 298 232 1768 189 0 16 chr3 227387729 227387819 -136759 + AluJb SINE Alu 1 91 -221 4712 104 34 7 chr3 227387819 227388492 -136086 + LTR8 LTR ERV1 1 691 0 1768 189 0 16 chr3 227388492 227388718 -135860 + AluJb SINE Alu 91 312 0 1779 143 48 3 chr3 227389286 227389579 -134999 + AluJb SINE Alu 3 308 -4 3025 131 50 30 chr3 227389662 227390111 -134467 + MER41B LTR ERV1 1 519 -116 2123 100 13 10 chr3 227390111 227390412 -134166 - AluSq SINE Alu -11 302 1 3025 131 50 30 chr3 227390412 227390532 -134046 + MER41B LTR ERV1 519 635 0 27 0 0 80 chr3 227390715 227390765 -133813 + AT_rich Low_complexity Low_complexity 1 46 0 857 230 36 22 chr3 227390815 227391089 -133489 + AluYa5 SINE Alu 28 305 -6 356 326 128 13 chr3 227391244 227391471 -133107 + L2 LINE L2 1851 2103 -1211 2178 95 7 0 chr3 227391495 227391780 -132798 + AluSx SINE Alu 18 304 -8 2642 170 38 0 chr3 227393609 227394109 -130469 + L1MB7 LINE L1 5657 6175 -9 1383 146 14 155 chr3 227394125 227394442 -130136 + AluJo SINE Alu 1 266 -36 2306 90 0 0 chr3 227394442 227394731 -129847 - AluY SINE Alu -22 289 1 1383 146 14 155 chr3 227394731 227394762 -129816 + AluJo SINE Alu 266 300 -2 2066 124 0 19 chr3 227394774 227395088 -129490 - AluSx SINE Alu -4 308 1 4204 132 72 4 chr3 227395094 227395828 -128750 - L1MA7 LINE L1 -2 6289 5506 2288 97 0 29 chr3 227396269 227396579 -127999 + AluSx SINE Alu 1 301 -11 2066 117 7 0 chr3 227396880 227397197 -127381 - AluSq SINE Alu 0 319 1 2054 81 66 4 chr3 227397395 227397668 -126910 - AluSx SINE Alu -6 306 17 384 261 78 7 chr3 227397670 227397823 -126755 - L1M4 LINE L1 -1725 4421 4258 2238 89 34 0 chr3 227397876 227398167 -126411 - AluSx SINE Alu -11 301 1 527 233 0 0 chr3 227398172 227398275 -126303 - AluJb SINE Alu -12 300 198 311 224 54 151 chr3 227399452 227399711 -124867 + MLT1J LTR MaLR 110 343 -168 917 125 0 22 chr3 227399870 227400006 -124572 + FLAM_C SINE Alu 1 133 0 2119 137 3 0 chr3 227400195 227400495 -124083 + AluSx SINE Alu 1 301 -11 2198 113 3 7 chr3 227400678 227400979 -123599 + AluSx SINE Alu 1 300 -12 289 299 9 9 chr3 227401131 227401238 -123340 - MIR SINE MIR -11 251 145 1964 102 39 18 chr3 227402089 227402373 -122205 - AluSq SINE Alu -23 290 1 2574 37 0 0 chr3 227402696 227402990 -121588 - AluY SINE Alu -16 295 2 642 154 0 9 chr3 227403185 227403295 -121283 - AluSg/x SINE Alu -18 294 186 414 0 0 0 chr3 227403468 227403514 -121064 + (TA)n Simple_repeat Simple_repeat 2 47 0 2012 125 19 19 chr3 227403519 227403831 -120747 - AluSx SINE Alu 0 312 1 1006 116 7 0 chr3 227404102 227404249 -120329 + AluSg/x SINE Alu 165 312 0 2056 145 0 3 chr3 227405793 227406097 -118481 + AluSx SINE Alu 1 303 -9 232 167 0 33 chr3 227407034 227407094 -117484 + GA-rich Low_complexity Low_complexity 5 62 0 2286 59 7 0 chr3 227409217 227409503 -115075 - L1PA5 LINE L1 -3 6151 5864 2214 129 3 0 chr3 227410035 227410338 -114240 - AluSx SINE Alu -8 304 1 22 56 0 0 chr3 227410346 227410382 -114196 + AT_rich Low_complexity Low_complexity 1 36 0 5265 227 41 60 chr3 227410438 227410506 -114072 + L1M1 LINE L1 3431 3499 -4066 1971 105 33 40 chr3 227410506 227410810 -113768 + AluSc SINE Alu 1 302 -7 5265 227 41 60 chr3 227410810 227410844 -113734 + L1M1 LINE L1 3499 3532 -4033 1621 145 3 98 chr3 227410844 227411161 -113417 - AluJb SINE Alu -25 287 1 5265 227 41 60 chr3 227411161 227411630 -112948 + L1M1 LINE L1 3532 4008 -3557 2177 122 3 10 chr3 227411630 227411934 -112644 + AluSx SINE Alu 1 302 -10 5265 227 41 60 chr3 227411934 227412475 -112103 + L1M1 LINE L1 4008 4557 -3008 8139 74 19 8 chr3 227412475 227413535 -111043 - MER11C LTR ERVK 0 1071 1 5265 227 41 60 chr3 227413535 227413704 -110874 + L1M1 LINE L1 4557 4728 -2837 2236 118 0 16 chr3 227413704 227413986 -110592 + AluSx SINE Alu 1 279 -33 198 0 0 0 chr3 227413986 227414008 -110570 + (TAAA)n Simple_repeat Simple_repeat 2 23 0 2236 118 0 16 chr3 227414008 227414040 -110538 + AluSx SINE Alu 279 310 -2 5265 227 41 60 chr3 227414040 227414357 -110221 + L1M1 LINE L1 4728 5049 -2516 1777 126 87 63 chr3 227414357 227414575 -110003 - THE1C LTR MaLR 0 375 164 2148 131 3 0 chr3 227414575 227414865 -109713 + AluSx SINE Alu 1 291 -21 207 0 0 0 chr3 227414868 227414891 -109687 + (TAAA)n Simple_repeat Simple_repeat 2 24 0 1777 126 87 63 chr3 227414891 227415034 -109544 - THE1C LTR MaLR -212 163 1 5265 227 41 60 chr3 227415034 227415146 -109432 + L1M1 LINE L1 5049 5094 -2471 2268 107 10 3 chr3 227415146 227415455 -109123 + AluSx SINE Alu 2 312 0 5265 227 41 60 chr3 227415455 227415567 -109011 + L1M1 LINE L1 5094 5207 -2358 1524 148 9 4 chr3 227415568 227415797 -108781 + AluSx SINE Alu 43 272 -40 582 296 56 64 chr3 227416023 227416083 -108495 - L1M4 LINE L1 -1845 4301 4242 2217 89 4 0 chr3 227416083 227416400 -108178 - AluSx SINE Alu 0 318 1 4717 149 32 24 chr3 227416400 227417025 -107553 - L1MC1 LINE L1 -9 6324 5689 2572 52 0 0 chr3 227417025 227417316 -107262 - AluY SINE Alu -20 291 1 4717 149 32 24 chr3 227417316 227417535 -107043 - L1MC1 LINE L1 -644 5689 5473 582 296 56 64 chr3 227417535 227417968 -106610 - L1M4 LINE L1 -1902 4244 3809 1944 114 44 0 chr3 227417997 227418302 -106276 + AluSx SINE Alu 1 317 0 2381 94 3 0 chr3 227418872 227419181 -105397 - AluSx SINE Alu -2 310 1 261 256 0 24 chr3 227419430 227419512 -105066 + MER116 DNA Mariner 1 80 0 477 241 50 0 chr3 227419772 227419913 -104665 - MIR SINE MIR -98 164 17 2157 113 0 0 chr3 227420055 227420348 -104230 + AluJb SINE Alu 1 293 -19 1831 141 74 0 chr3 227420416 227420700 -103878 + AluSx SINE Alu 3 307 -5 331 248 50 33 chr3 227421251 227421372 -103206 - MIR3 SINE MIR -71 137 15 2538 72 0 3 chr3 227421828 227422135 -102443 + AluSx SINE Alu 1 306 -6 202 316 91 29 chr3 227422568 227422777 -101801 + L2 LINE L2 2216 2437 -877 208 294 20 20 chr3 227422806 227422908 -101670 + MER5B DNA MER1_type 1 102 -76 815 182 0 0 chr3 227423096 227423228 -101350 + FLAM_C SINE Alu 1 132 -1 797 189 140 100 chr3 227423688 227423782 -100796 + L1ME1 LINE L1 4853 4942 -1204 2283 89 0 0 chr3 227423782 227424063 -100515 + AluSx SINE Alu 1 281 -31 5848 49 111 2 chr3 227424063 227425210 -99368 - SVA Other Other -1119 1386 2 797 189 140 100 chr3 227425210 227425226 -99352 + L1ME1 LINE L1 4942 4956 -1190 279 0 0 0 chr3 227425226 227425257 -99321 + (TAAA)n Simple_repeat Simple_repeat 1 31 0 797 189 140 100 chr3 227425257 227425482 -99096 + L1ME1 LINE L1 4956 5208 -938 1885 159 0 44 chr3 227425482 227425802 -98776 + AluJo SINE Alu 5 310 -2 671 228 37 75 chr3 227425819 227425887 -98691 + L1ME1 LINE L1 5522 5591 -575 2370 97 3 0 chr3 227425887 227426187 -98391 + AluSg SINE Alu 2 302 -8 2197 91 0 3 chr3 227426189 227426474 -98104 + AluY SINE Alu 3 286 -25 201 39 0 0 chr3 227426474 227426500 -98078 + (TTAA)n Simple_repeat Simple_repeat 3 28 0 671 228 37 75 chr3 227426500 227426668 -97910 + L1ME1 LINE L1 5590 5753 -413 775 260 51 73 chr3 227426726 227426832 -97746 + L1ME1 LINE L1 5737 5844 -320 4008 205 57 12 chr3 227426832 227427692 -96886 - MER54A LTR ERVL -2 899 1 775 260 51 73 chr3 227427692 227427967 -96611 + L1ME1 LINE L1 5844 6108 -56 1040 118 31 0 chr3 227427967 227428128 -96450 + FRAM SINE Alu 1 165 -11 21 0 0 0 chr3 227428366 227428387 -96191 + GC_rich Low_complexity Low_complexity 1 21 0 24 0 0 0 chr3 227428854 227428878 -95700 + GC_rich Low_complexity Low_complexity 1 24 0 29 78 0 0 chr3 227429511 227429575 -95003 + GC_rich Low_complexity Low_complexity 1 64 0 425 266 169 34 chr3 227432054 227432231 -92347 - MIR SINE MIR -56 206 6 181 261 35 63 chr3 227432354 227432496 -92082 - L2 LINE L2 -467 2847 2710 1819 167 61 19 chr3 227432915 227433275 -91303 + THE1C LTR MaLR 1 375 0 273 291 154 8 chr3 227433426 227433543 -91035 + MIR SINE MIR 22 155 -107 811 158 0 0 chr3 227433550 227433670 -90908 + AluSg/x SINE Alu 176 295 -15 2248 102 10 0 chr3 227433755 227434050 -90528 + AluSg SINE Alu 1 298 -12 2472 70 3 0 chr3 227434061 227434395 -90183 + AluY SINE Alu 1 311 0 223 257 267 21 chr3 227434464 227434651 -89927 - L2 LINE L2 -1074 2240 2008 511 226 90 8 chr3 227434755 227434888 -89690 + MLT1L LTR MaLR 159 302 -313 3636 165 56 15 chr3 227434894 227435359 -89219 + L1MB7 LINE L1 5420 5927 -257 4461 178 22 62 chr3 227435359 227436369 -88209 - LTR5 LTR ERVK 0 969 1 3636 165 56 15 chr3 227436369 227436638 -87940 + L1MB7 LINE L1 5927 6184 0 791 150 8 8 chr3 227436820 227436947 -87631 - FLAM_A SINE Alu -6 127 1 344 306 49 0 chr3 227437010 227437154 -87424 - LTR67 LTR ERVL -48 509 359 315 261 57 34 chr3 227437469 227437645 -86933 - L1MEc LINE L1 -4641 1755 1576 2257 123 10 0 chr3 227437645 227438024 -86554 - AluSx SINE Alu 0 382 1 231 255 34 107 chr3 227439725 227439754 -84824 + L1ME4a LINE L1 5984 6014 -107 2382 84 6 0 chr3 227439754 227440065 -84513 - AluSq SINE Alu 0 313 1 231 255 34 107 chr3 227440065 227440184 -84394 + L1ME4a LINE L1 6014 6121 0 2133 131 3 13 chr3 227440734 227441047 -83531 + AluSx SINE Alu 1 310 -2 6634 133 68 30 chr3 227441048 227441910 -82668 + L1M1 LINE L1 2305 3134 -4431 2421 72 16 3 chr3 227441910 227442217 -82361 + AluY SINE Alu 1 311 0 6634 133 68 30 chr3 227442217 227442860 -81718 + L1M1 LINE L1 3134 3873 -3692 204 40 0 0 chr3 227442860 227442885 -81693 + (TCTA)n Simple_repeat Simple_repeat 2 26 0 6634 133 68 30 chr3 227442885 227442952 -81626 + L1M1 LINE L1 3873 3936 -3629 225 225 0 62 chr3 227442999 227443079 -81499 + L1M1 LINE L1 3926 4000 -3565 1999 170 0 0 chr3 227443081 227443387 -81191 + AluSx SINE Alu 1 306 -6 2246 103 3 0 chr3 227443396 227443688 -80890 + AluSp SINE Alu 3 295 -18 2525 225 103 20 chr3 227443720 227444658 -79920 - L1 LINE L1 -1247 4899 3864 269 217 125 103 chr3 227444703 227444903 -79675 - MLT1I LTR MaLR -224 185 12 1706 153 30 13 chr3 227444933 227445288 -79290 - Tigger4(Zombi) DNA MER2_type 0 2731 1 198 184 122 49 chr3 227445579 227445657 -78921 - MIR SINE MIR -58 150 67 810 298 37 4 chr3 227446014 227446256 -78322 - MIR SINE MIR 0 262 13 195 313 0 0 chr3 227446278 227446326 -78252 - MIR SINE MIR -202 60 13 1929 128 7 18 chr3 227446354 227446498 -78080 - AluJo SINE Alu -34 278 137 1762 159 23 10 chr3 227446498 227446799 -77779 - AluJb SINE Alu -7 305 1 1929 128 7 18 chr3 227446799 227446935 -77643 - AluJo SINE Alu -175 137 1 317 290 54 0 chr3 227447118 227447211 -77367 + MIR SINE MIR 5 102 -160 447 265 87 87 chr3 227447720 227448007 -76571 + L1MC4a LINE L1 4188 4474 -1672 637 289 78 48 chr3 227448009 227448851 -75727 + L1MC4a LINE L1 5006 5783 -379 23 54 0 0 chr3 227449080 227449117 -75461 + AT_rich Low_complexity Low_complexity 1 37 0 240 253 152 20 chr3 227449918 227450017 -74561 + L2 LINE L2 3188 3299 -14 1322 80 0 0 chr3 227450085 227450247 -74331 + AluSc SINE Alu 1 162 -147 1408 177 35 11 chr3 227450606 227450866 -73712 + AluJo SINE Alu 28 293 -19 2277 73 21 0 chr3 227450883 227451169 -73409 - AluSg SINE Alu -18 292 1 238 254 158 61 chr3 227451326 227451440 -73138 + L2 LINE L2 3145 3269 -3 692 106 177 9 chr3 227453400 227453513 -71065 - AluJb SINE Alu -173 139 8 200 257 229 0 chr3 227453534 227453604 -70974 - MIR SINE MIR -160 102 17 558 169 89 16 chr3 227453687 227453811 -70767 + FLAM_A SINE Alu 1 133 0 7386 85 24 3 chr3 227453859 227454808 -69770 + LTR5 LTR ERVK 1 969 0 1453 170 10 74 chr3 227454936 227455102 -69476 - AluJo SINE Alu -20 292 154 2238 117 3 3 chr3 227455102 227455409 -69169 - AluSc SINE Alu -2 307 1 1453 170 10 74 chr3 227455409 227455554 -69024 - AluJo SINE Alu -158 154 1 2192 113 20 0 chr3 227455752 227456044 -68534 - AluSg SINE Alu -12 298 1 347 335 88 11 chr3 227456306 227456488 -68090 - MIR3 SINE MIR -8 200 5 879 121 46 0 chr3 227458611 227458852 -65726 + CT-rich Low_complexity Low_complexity 1 252 0 274 100 0 0 chr3 227458866 227458906 -65672 - AluJ/FRAM SINE Alu -34 268 229 607 208 0 0 chr3 227458906 227459012 -65566 - AluJo/FLAM SINE Alu -205 107 2 916 247 245 12 chr3 227459058 227459471 -65107 + MLT1E2 LTR MaLR 108 616 -10 2130 119 3 0 chr3 227459776 227460069 -64509 - AluSx SINE Alu -18 294 1 802 226 107 62 chr3 227460473 227460529 -64049 + MLT1J LTR MaLR 1 53 -458 2375 103 0 3 chr3 227460529 227460830 -63748 - AluSx SINE Alu -12 300 1 802 226 107 62 chr3 227460830 227461082 -63496 + MLT1J LTR MaLR 53 323 -188 349 294 105 13 chr3 227461915 227462068 -62510 - MIR SINE MIR 0 262 96 2347 205 22 72 chr3 227462099 227462218 -62360 + MLT2B3 LTR ERVL 3 126 -428 2357 103 0 0 chr3 227462218 227462520 -62058 - AluSg SINE Alu -8 302 1 2347 205 22 72 chr3 227462520 227462981 -61597 + MLT2B3 LTR ERVL 126 554 0 1653 169 40 4 chr3 227463513 227463786 -60792 + AluJo SINE Alu 11 293 -19 1907 157 0 7 chr3 227463786 227464071 -60507 + AluSx SINE Alu 1 284 -28 403 106 80 0 chr3 227464084 227464175 -60403 - L1MA4A LINE L1 -166 6134 6034 350 288 77 35 chr3 227464197 227464715 -59863 - L1MDa LINE L1 -2847 3693 3198 1963 163 0 0 chr3 227464715 227465010 -59568 - AluJo SINE Alu -17 295 1 350 288 77 35 chr3 227465010 227465348 -59230 - L1MDa LINE L1 -3342 3198 2665 2346 97 7 7 chr3 227465353 227465663 -58915 - AluSx SINE Alu -2 310 1 392 219 140 9 chr3 227465664 227465778 -58800 - L1MDa LINE L1 -3995 2545 2417 27 0 0 0 chr3 227465837 227465864 -58714 + AT_rich Low_complexity Low_complexity 1 27 0 2159 93 42 104 chr3 227465997 227466382 -58196 - THE1B LTR MaLR -3 361 1 1259 259 50 46 chr3 227466384 227466956 -57622 - L1MDa LINE L1 -5007 1523 946 312 27 0 0 chr3 227466956 227466993 -57585 + (TG)n Simple_repeat Simple_repeat 2 38 0 1259 259 50 46 chr3 227466993 227467073 -57505 - L1MDa LINE L1 -5584 946 868 2483 91 3 0 chr3 227467156 227467465 -57113 - AluSg SINE Alu 0 310 1 408 278 46 102 chr3 227468015 227468134 -56444 - L1ME4a LINE L1 0 6121 6018 2382 84 6 0 chr3 227468134 227468445 -56133 + AluSq SINE Alu 1 313 0 408 278 46 102 chr3 227468445 227468541 -56037 - L1ME4a LINE L1 -103 6018 5918 2258 123 10 0 chr3 227470175 227470554 -54024 + AluSx SINE Alu 1 382 0 315 261 57 34 chr3 227470554 227470730 -53848 + L1MEc LINE L1 1576 1755 -4641 344 306 49 0 chr3 227471045 227471189 -53389 + LTR67 LTR ERVL 359 509 -48 791 150 8 8 chr3 227471252 227471379 -53199 + FLAM_A SINE Alu 1 127 -6 3636 165 56 15 chr3 227471561 227471830 -52748 - L1MB7 LINE L1 0 6184 5927 4461 178 22 62 chr3 227471830 227472840 -51738 + LTR5 LTR ERVK 1 969 0 3636 165 56 15 chr3 227472840 227473305 -51273 - L1MB7 LINE L1 -257 5927 5420 511 226 90 8 chr3 227473311 227473444 -51134 - MLT1L LTR MaLR -313 302 159 223 257 267 21 chr3 227473548 227473735 -50843 + L2 LINE L2 2008 2240 -1074 2472 70 3 0 chr3 227473804 227474138 -50440 - AluY SINE Alu 0 311 1 2404 70 3 0 chr3 227474149 227474448 -50130 - AluSx SINE Alu -12 300 1 230 303 50 8 chr3 227474448 227474567 -50011 + L1ME4a LINE L1 5998 6121 0 1401 265 57 69 chr3 227475001 227475117 -49461 + L1MEd LINE L1 681 797 -5733 2519 84 3 0 chr3 227475117 227475426 -49152 + AluSg SINE Alu 1 310 0 1401 265 57 69 chr3 227475426 227475589 -48989 + L1MEd LINE L1 797 960 -5570 312 27 0 0 chr3 227475589 227475626 -48952 + (CA)n Simple_repeat Simple_repeat 2 38 0 1401 265 57 69 chr3 227475626 227476198 -48380 + L1MEd LINE L1 960 1523 -5007 2137 93 42 104 chr3 227476200 227476585 -47993 + THE1B LTR MaLR 1 361 -3 27 0 0 0 chr3 227476718 227476745 -47833 + AT_rich Low_complexity Low_complexity 1 27 0 380 226 104 9 chr3 227476812 227476918 -47660 + L1MEd LINE L1 2430 2545 -3995 2196 97 7 7 chr3 227476919 227477229 -47349 + AluSx SINE Alu 1 310 -2 741 282 77 35 chr3 227477234 227477572 -47006 + L1MEd LINE L1 2665 2987 -3553 1834 159 0 0 chr3 227477572 227477867 -46711 + AluJo SINE Alu 1 295 -17 741 282 77 35 chr3 227477867 227478385 -46193 + L1MEd LINE L1 2987 3693 -2847 428 106 80 0 chr3 227478407 227478498 -46080 + L1MA4A LINE L1 6034 6134 -166 1789 154 0 7 chr3 227478511 227478797 -45781 - AluSx SINE Alu -28 284 1 1514 169 40 4 chr3 227478797 227479069 -45509 - AluJo SINE Alu -20 292 11 2332 198 22 72 chr3 227479601 227480062 -44516 - MLT2B3 LTR ERVL 0 554 126 2208 103 0 0 chr3 227480062 227480364 -44214 + AluSg SINE Alu 1 302 -8 2332 198 22 72 chr3 227480364 227480483 -44095 - MLT2B3 LTR ERVL -428 126 3 331 301 105 13 chr3 227480514 227480667 -43911 + MIR SINE MIR 96 262 0 896 226 107 62 chr3 227481500 227481752 -42826 - MLT1J LTR MaLR -188 323 53 2224 103 0 3 chr3 227481752 227482053 -42525 + AluSx SINE Alu 1 300 -12 896 226 107 62 chr3 227482053 227482109 -42469 - MLT1J LTR MaLR -458 53 1 1991 119 3 0 chr3 227482513 227482806 -41772 + AluSx SINE Alu 1 294 -18 1020 247 245 12 chr3 227483111 227483524 -41054 - MLT1E2 LTR MaLR -10 616 108 587 208 0 0 chr3 227483570 227483676 -40902 + AluJo/FLAM SINE Alu 2 107 -205 292 100 0 0 chr3 227483676 227483716 -40862 + AluJ/FRAM SINE Alu 229 268 -34 741 130 43 0 chr3 227483730 227483891 -40687 + GA-rich Low_complexity Low_complexity 2 169 0 331 335 88 11 chr3 227486014 227486196 -38382 + MIR3 SINE MIR 5 200 -8 2075 109 20 0 chr3 227486458 227486751 -37827 + AluSg SINE Alu 1 299 -11 1319 170 10 71 chr3 227486948 227487092 -37486 + AluJo SINE Alu 1 117 -195 2232 92 3 3 chr3 227487092 227487397 -37181 + AluSc SINE Alu 1 305 -4 1319 170 10 71 chr3 227487397 227487563 -37015 + AluJo SINE Alu 117 292 -20 6909 84 24 3 chr3 227487691 227488640 -35938 - LTR5 LTR ERVK 0 969 1 541 169 89 16 chr3 227488690 227488814 -35764 - FLAM_A SINE Alu 0 133 1 197 257 229 0 chr3 227488897 227488967 -35611 + MIR SINE MIR 17 102 -160 679 91 182 9 chr3 227488988 227489098 -35480 + AluJb SINE Alu 8 136 -176 236 254 158 61 chr3 227491064 227491178 -33400 - L2 LINE L2 -3 3269 3145 2140 73 21 0 chr3 227491335 227491621 -32957 + AluSg SINE Alu 1 292 -18 1497 147 35 8 chr3 227491638 227491897 -32681 - AluJo SINE Alu -19 293 28 2181 93 0 23 chr3 227492341 227492643 -31935 - AluSq SINE Alu -18 295 1 22 35 0 0 chr3 227493862 227493891 -30687 + AT_rich Low_complexity Low_complexity 1 29 0 677 238 53 0 chr3 227493935 227494086 -30492 + FRAM SINE Alu 1 158 -18 239 250 34 23 chr3 227494311 227494399 -30179 - HAL1 LINE L1 -1596 911 823 836 123 0 0 chr3 227496149 227496271 -28307 + FLAM_C SINE Alu 1 122 -21 2206 92 0 3 chr3 227498823 227499117 -25461 + AluSx SINE Alu 1 293 -19 2260 94 7 0 chr3 227499409 227499716 -24862 + AluSx SINE Alu 1 309 -3 1129 130 83 26 chr3 227502000 227502192 -22386 - MER1B DNA MER1_type 0 339 137 21 0 0 0 chr3 227502709 227502730 -21848 + AT_rich Low_complexity Low_complexity 1 21 0 1487 120 132 11 chr3 227503544 227503810 -20768 - AluJo SINE Alu -14 298 1 389 233 74 106 chr3 227504092 227504281 -20297 + MIR SINE MIR 36 218 -44 1153 140 0 0 chr3 227505061 227505232 -19346 - FRAM SINE Alu -8 168 1 265 95 0 24 chr3 227506242 227506310 -18268 + Alu SINE Alu 248 300 0 1757 162 0 25 chr3 227506313 227506627 -17951 + AluSx SINE Alu 1 306 -6 1974 120 0 3 chr3 227506789 227507102 -17476 - AluSg SINE Alu 0 312 1 1870 145 7 7 chr3 227507104 227507400 -17178 - AluSx SINE Alu -16 296 1 1559 154 126 72 chr3 227507414 227507635 -16943 - L1MC2 LINE L1 -11 6333 6125 733 168 24 0 chr3 227507635 227507760 -16818 - FLAM_A SINE Alu -1 132 5 1559 154 126 72 chr3 227507760 227507999 -16579 - L1MC2 LINE L1 -219 6125 5848 349 239 115 0 chr3 227508059 227508172 -16406 - L1MEc LINE L1 -5533 863 738 186 43 0 0 chr3 227508629 227508652 -15926 + (T)n Simple_repeat Simple_repeat 1 23 0 1462 112 19 0 chr3 227508674 227508880 -15698 - AluSx SINE Alu -102 210 1 255 31 0 0 chr3 227508888 227508920 -15658 + (TTTG)n Simple_repeat Simple_repeat 1 32 0 273 183 14 70 chr3 227509125 227509196 -15382 - L1MEc LINE L1 -5644 752 686 1518 278 64 30 chr3 227509200 227509742 -14836 + L2 LINE L2 2511 3088 -225 1453 181 6 35 chr3 227509742 227510057 -14521 - AluJo SINE Alu -6 306 1 1518 278 64 30 chr3 227510057 227510291 -14287 + L2 LINE L2 3088 3313 0 540 216 26 9 chr3 227510423 227510445 -14133 - L1MB7 LINE L1 -276 5908 5887 932 262 203 28 chr3 227510445 227510763 -13815 - L1MD3 LINE L1 -492 5686 5487 1763 125 71 0 chr3 227510763 227511044 -13534 - AluSp SINE Alu -12 301 1 932 262 203 28 chr3 227511044 227511114 -13464 - L1MD3 LINE L1 -691 5487 5431 816 145 0 0 chr3 227511118 227511242 -13336 - AluSg/x SINE Alu -11 299 176 291 133 0 0 chr3 227511248 227511293 -13285 - L1MD3 LINE L1 -741 5437 5393 1731 169 0 16 chr3 227511323 227511630 -12948 + AluSx SINE Alu 1 302 -10 769 162 0 42 chr3 227512466 227512608 -11970 - AluJo SINE Alu -176 136 1 392 335 109 36 chr3 227512826 227513002 -11576 - L1ME4a LINE L1 -112 6009 5847 1804 136 3 13 chr3 227513002 227513304 -11274 - AluJb SINE Alu -13 299 1 392 335 109 36 chr3 227513304 227513431 -11147 - L1ME4a LINE L1 -274 5847 5684 261 118 65 108 chr3 227513568 227513661 -10917 - L1ME4a LINE L1 -772 5561 5473 * 320 346 30 21 chr3 227513650 227513884 -10694 - L1 LINE L1 -1884 4262 4027 931 98 23 0 chr3 227513887 227514019 -10559 - AluY SINE Alu -176 135 1 1054 132 11 22 chr3 227514066 227514248 -10330 - LTR12 LTR ERV1 -480 234 55 727 150 23 30 chr3 227514248 227514381 -10197 - LTR12 LTR ERV1 -530 184 53 249 250 0 0 chr3 227514381 227514433 -10145 - LTR30 LTR ERV1 -670 52 1 2739 193 59 33 chr3 227514433 227515109 -9469 + L1PA16 LINE L1 4603 5260 -906 1795 148 0 0 chr3 227515109 227515386 -9192 + AluSg SINE Alu 1 277 -33 255 31 0 0 chr3 227515387 227515419 -9159 + (TAAA)n Simple_repeat Simple_repeat 1 32 0 2739 193 59 33 chr3 227515419 227515682 -8896 + L1PA16 LINE L1 5259 5588 -578 2494 138 9 28 chr3 227516078 227516112 -8466 + L1PA16 LINE L1 5557 5590 -576 2055 128 0 0 chr3 227516112 227516417 -8161 - AluSx SINE Alu -7 305 1 2494 138 9 28 chr3 227516417 227516808 -7770 + L1PA16 LINE L1 5590 5974 -192 2081 120 16 0 chr3 227516808 227517116 -7462 + AluSq SINE Alu 1 313 0 315 253 16 0 chr3 227517130 227517253 -7325 + L1ME LINE L1 871 1001 -5069 1311 102 0 0 chr3 227517309 227517485 -7093 + AluSq SINE Alu 1 176 -137 733 90 0 54 chr3 227517532 227517643 -6935 + AluSq SINE Alu 181 285 -28 385 261 29 50 chr3 227517661 227517861 -6717 + L1ME LINE L1 1101 1297 -4964 2245 63 3 13 chr3 227517861 227518161 -6417 + AluY SINE Alu 1 297 -14 385 261 29 50 chr3 227518161 227518198 -6380 + L1ME LINE L1 1297 1333 -4928 1444 171 6 52 chr3 227518198 227518525 -6053 + AluJb SINE Alu 1 312 0 836 240 0 15 chr3 227518527 227518723 -5855 - MER97a DNA MER1_type? -657 237 45 219 343 41 0 chr3 227518777 227518850 -5728 + L2 LINE L2 2330 2405 -909 29 60 0 0 chr3 227519189 227519239 -5339 + GC_rich Low_complexity Low_complexity 1 50 0 1794 91 0 36 chr3 227519835 227520109 -4469 + AluSx SINE Alu 28 291 -21 1954 126 4 0 chr3 227521560 227521838 -2740 - AluSx SINE Alu -33 279 1 323 167 131 0 chr3 227521838 227521912 -2666 + L1MC/D LINE L1 5350 5438 -2370 766 251 59 0 chr3 227522014 227522201 -2377 - MER58A DNA MER1_type 0 224 27 485 208 42 0 chr3 227522353 227522449 -2129 + AluJo SINE Alu 117 216 -96 207 0 0 0 chr3 227522453 227522476 -2102 + (A)n Simple_repeat Simple_repeat 1 23 0 * 255 152 0 0 chr3 227522475 227522521 -2057 + (TA)n Simple_repeat Simple_repeat 2 47 0 2839 181 30 16 chr3 227522562 227523126 -1452 + L1M1 LINE L1 16 587 -6978 410 125 50 25 chr3 227523474 227523554 -1024 - AluS SINE Alu -216 87 6 832 74 0 0 chr3 227523569 227523677 -901 + AluSp/q SINE Alu 193 300 -13 1424 160 41 11 chr3 227523689 227523957 -621 + AluSq SINE Alu 1 276 -37